Command line: [./exonerate --model protein2genome --maxintron 2000 selected_exonerate_related_hymenoptera_80perCDHIT.fa Habropoda_laboriosa_whole_genome.fa --showtargetgff TRUE] Hostname: [coil] C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 335 -> 390 Target range: 3178740 -> 3178905 336 : GluGluSerMetLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuPr : 354 ...:!!||| ||||||||||||!.!:!!||| !! !|||||| ||||| SerGlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuPr 3178741 : TCCCAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCC : 3178795 355 : oAspLysThrIleLeuAspLeuThrLeuIleIleAlaArgSerSerValValValG : 373 | ! ! ! !! !|||||| !||||||!!:|||||||||!.! ! !|||: oThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValL 3178796 : CACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTA : 3178852 374 : lnIleThrAlaGlyLysLeuIleHisMetSerIleGlnThrPheThrAspVal : 390 !!!!:|||::!||| ! :!!:!! !:!:||| !:!!:!!|||! !..!||| ysMetThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerVal 3178853 : AAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTT : 3178905 vulgar: AmOr28PSE 335 390 . KQ414646.1 3178740 3178905 + 108 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178741 3178905 108 + . gene_id 1 ; sequence AmOr28PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178741 3178905 . + . KQ414646.1 exonerate:protein2genome:local exon 3178741 3178905 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178741 3178905 108 + . alignment_id 1 ; Query AmOr28PSE ; Align 3178741 336 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr2 Target: KQ414731.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold204, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1553 Query range: 0 -> 351 Target range: 591043 -> 587891 1 : MetMetLysPheLysGlnGlnGlyLeuIleAlaAspLeuMetProAsnIleAsnLeuM : 20 |||||||||||||||||||||||||||:!!|||||||||||||||||||||!!.|||| MetMetLysPheLysGlnGlnGlyLeuValAlaAspLeuMetProAsnIleLysLeuM 591043 : ATGATGAAGTTCAAGCAACAGGGGCTAGTCGCGGACTTAATGCCCAACATAAAGCTGA : 590986 21 : etLysAlaThrGlyHisPheMetPheAsnTyrTyrThrAspSerSerThrLysHisIl : 39 ||||||||!:!|||||||||:!!||||||||||||||||||!:!:!!|||||| !!! etLysAlaSerGlyHisPheLeuPheAsnTyrTyrThrAspAsnAlaThrLysGlyMe 590985 : TGAAAGCCAGTGGGCATTTTTTGTTCAACTATTACACTGACAATGCTACGAAGGGTAT : 590929 40 : eHisLysIleTyrCysIle >>>> Target Intron 1 >>>> ValHisLeuV : 49 :|||||||||||||||||| 419 bp |||||||||| tHisLysIleTyrCysIle++ ++ValHisLeuV 590928 : GCACAAAATCTACTGCATCgt.........................agGTGCATCTAG : 590480 50 : alLeuIleLeuMetGlnPheGlyPheCysGlyIleAsnLeuMetMetGluSerGluAs : 68 |||||||||||!!:||||||||||||||||||||||||||||||:!!||||||!!:|| alLeuIleLeuIleGlnPheGlyPheCysGlyIleAsnLeuMetLeuGluSerAspAs 590479 : TACTGATCCTAATACAGTTCGGATTCTGCGGTATAAACCTAATGTTGGAGAGCGACGA : 590423 69 : pValAspAspLeuThrAlaAsnThrIleThrMetLeuPhePheThrHisSerValVal : 87 |||||||!!:|||||||||||||||||||||||||||||||||||||||||||||||| pValAspGluLeuThrAlaAsnThrIleThrMetLeuPhePheThrHisSerValVal 590422 : CGTTGACGAACTGACGGCGAACACGATCACGATGCTGTTCTTCACGCACAGCGTGGTT : 590366 88 : LysLeuValTyrPheAlaValArgSerLysLeuPheTyrArgThrLeuGlyIleTrpA : 107 ||||||! !||||||||||||||||||||||||||||||||||||!!!|||||||||| LysLeuGlyTyrPheAlaValArgSerLysLeuPheTyrArgThrPheGlyIleTrpA 590365 : AAGCTCGGTTATTTCGCCGTCAGGAGCAAGTTGTTCTACAGAACCTTCGGTATTTGGA : 590306 108 : snAsnProAsnSerHisProLeuPheAlaGluSerAsnAlaArgTyrHisGlnIleAl : 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| snAsnProAsnSerHisProLeuPheAlaGluSerAsnAlaArgTyrHisGlnIleAl 590305 : ATAATCCGAACAGCCATCCTCTGTTCGCCGAGAGTAACGCGCGTTATCATCAGATTgc : 590249 127 : aValLysLysMetArgIleLeuLeuLeuAlaValIleGlyThrThrValLeuSerAla : 145 |||||||||||||||||||||||||:!!||||||!!:||||||!:!||||||!!!!.! aValLysLysMetArgIleLeuLeuMetAlaValMetGlyThrSerValLeuThrVal 590248 : tgtgaaaaaaatgagaatacTGTTGATGGCCGTCATGGGAACCAGTGTGCTCACCGTC : 590192 146 : IleSerTrpThrThrIleThrPheIleGlyAspSerValLysLysValIleAspProV : 165 ||||||||||||||||||||||||||||||||||||||||||||||||:!!||||||| IleSerTrpThrThrIleThrPheIleGlyAspSerValLysLysValValAspProV 590191 : ATTTCTTGGACCACAATCACGTTCATCGGTGATTCCGTGAAGAAGGTCGTCGATCCTG : 590132 166 : alThrAsnGluThrThrTyrValGlu >>>> Target Intron 2 >>>> Ile : 174 ||||||||||||||:!!!:!|||||| 672 bp :!! alThrAsnGluThrSerPheValGlu++ ++Val 590131 : TTACCAACGAAACCTCTTTTGTCGAggt.........................agGTA : 589433 175 : ProArgLeuMetValArgSerTrpTyrProTyrAspProSerHisGlyMetAlaHisI : 194 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ProArgLeuMetValArgSerTrpTyrProTyrAspProSerHisGlyMetAlaHisI 589432 : CCAAGATTGATGGTGCGTTCTTGGTATCCGTACGACCCCAGCCACGGGATGGCTCACA : 589373 195 : leLeuThrLeuIlePheGlnPheTyrTrpLeuIlePheCysMetAlaAspAlaAsnLe : 213 |||||||||||:!!||||||.!!||||||||||||||| !!!:|||||||||||||| leLeuThrLeuValPheGlnLeuTyrTrpLeuIlePheThrIleAlaAspAlaAsnLe 589372 : TTCTTACGTTAGTATTCCAACTTTACTGGCTGATATTTACCATAGCAGACGCGAATCT : 589316 214 : uLeuAspValLeuPheCysSerTrpLeuLeuPheAlaCysGluGlnIleGlnHisLeu : 232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| uLeuAspValLeuPheCysSerTrpLeuLeuPheAlaCysGluGlnIleGlnHisLeu 589315 : CCTAGACGTGCTGTTCTGTTCGTGGCTCCTCTTCGCTTGTGAACAAATTCAGCATCTA : 589259 233 : LysAsnIleMetLysProLeuMetGluPheSerAlaThrLeuAspThrValValProA : 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| LysAsnIleMetLysProLeuMetGluPheSerAlaThrLeuAspThrValValProA 589258 : AAGAATATCATGAAACCACTGATGGAATTCAGCGCGACCCTGGACACTGTTGTACCAA : 589199 253 : snSerGlyGluLeuPheLys >>>> Target Intron 3 >>>> AlaGly<-> : 261 |||||||||||||||||||| 1002 bp |||||| snSerGlyGluLeuPheLys++ ++AlaGlyAla 589198 : ACAGTGGAGAATTGTTTAAAgt.........................agGCCGGTGCG : 588170 262 : SerAlaGluGlnProLysGluGlnGluProLeuProProValThrPro<->ProGlnG : 279 !:! !!!:!!. !|||!!:|||!!:! !! !||||||!.!|||||| |||||| AsnMetAspHisGlyLysAspGlnAspLeuProProProAlaThrProHisProGlnT 588169 : AACATGGATCACGGGAAGGATCAAGATCTACCACCGCCAGCCACGCCACATCCTCAAA : 588110 280 : lyGluAsnMetLeuAspMetAspLeuArgGlyIleTyrSerAsnArgThrAspPheTh : 298 !!!:||||||||||||||||||||||||||||||||||||||||||||||||!:!|| hrAspAsnMetLeuAspMetAspLeuArgGlyIleTyrSerAsnArgThrAspTyrTh 588109 : CCGATAATATGCTGGACATGGATCTTCGAGGAATATACAGCAACAGGACAGATTACAC : 588053 299 : rThrThrPheArgProThrAlaGlyMetThrPheAsnGlyGlyValGlyProAsnGly : 317 ||||||||||||| !!||||||||| !|||||||||||||||||||||||||||||| rThrThrPheArgAlaThrAlaGlyAlaThrPheAsnGlyGlyValGlyProAsnGly 588052 : GACTACCTTCCGGGCAACTGCTGGCGCGACCTTTAACGGCGGTGTAGGACCAAATGGA : 587996 318 : LeuThrLysLysGlnGluMetLeuValArgSerAlaIleLysTyrTrpValGluArgH : 337 ||||||:!!||||||||||||||||||||||||||||||||||||||||||||||||| LeuThrGlnLysGlnGluMetLeuValArgSerAlaIleLysTyrTrpValGluArgH 587995 : TTGACACAGAAACAGGAGATGTTGGTCAGAAGTGCCATCAAATATTGGGTAGAGAGGC : 587936 338 : isLysHisIleValArgLeuValThrAlaIleGlyAspAlaTyr : 351 |||||||||||||||||! !||| !!.!.!! !|||...::: isLysHisIleValArg***ValHisValPhePheAspValPhe 587935 : ACAAACACATTGTCAGGTAAGTACATGTTTTCTTCGAtgttttc : 587892 vulgar: AmOr2 0 351 . KQ414731.1 591043 587891 - 1553 M 45 135 5 0 2 I 0 415 3 0 2 M 128 384 5 0 2 I 0 668 3 0 2 M 85 255 5 0 2 I 0 998 3 0 2 M 2 6 G 0 3 M 16 48 G 0 3 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414731.1 exonerate:protein2genome:local gene 587892 591043 1553 - . gene_id 1 ; sequence AmOr2 ; gene_orientation + KQ414731.1 exonerate:protein2genome:local cds 590909 591043 . - . KQ414731.1 exonerate:protein2genome:local exon 590909 591043 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 590907 590908 . - . intron_id 1 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 590490 590908 . - . intron_id 1 KQ414731.1 exonerate:protein2genome:local splice3 590490 590491 . - . intron_id 0 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 590106 590489 . - . KQ414731.1 exonerate:protein2genome:local exon 590106 590489 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 590104 590105 . - . intron_id 2 ; splice_site "gt" KQ414731.1 exonerate:protein2genome:local intron 589434 590105 . - . intron_id 2 KQ414731.1 exonerate:protein2genome:local splice3 589434 589435 . - . intron_id 1 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 589179 589433 . - . KQ414731.1 exonerate:protein2genome:local exon 589179 589433 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 589177 589178 . - . intron_id 3 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 588177 589178 . - . intron_id 3 KQ414731.1 exonerate:protein2genome:local splice3 588177 588178 . - . intron_id 2 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 587892 588176 . - . KQ414731.1 exonerate:protein2genome:local exon 587892 588176 . - . insertions 6 ; deletions 0 KQ414731.1 exonerate:protein2genome:local similarity 587892 591043 1553 - . alignment_id 1 ; Query AmOr2 ; Align 591044 1 135 ; Align 590490 46 384 ; Align 589434 174 255 ; Align 588177 259 6 ; Align 588168 261 48 ; Align 588117 277 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr2 Target: KQ414731.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold204, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 619 Query range: 341 -> 478 Target range: 582363 -> 580207 342 : ArgLeuValThrAlaIleGlyAspAlaTyrGlyValAlaLeuLeuLeuHisMetLeuT : 361 ||||||||||||:!!:!!|||||||||||||||||||||||||||||||||||||||. ArgLeuValThrSerValGlyAspAlaTyrGlyValAlaLeuLeuLeuHisMetLeuA 582363 : agATTGGTCACTTCAGTCGGTGATGCTTACGGTGTTGCTCTACTGCTGCACATGTTAG : 582306 362 : hrThrThrIleThrLeuThrLeuLeuAlaTyrGlnAlaThrLys >>>> Target : 376 !!|||||||||||||||||||||||||||||||||||||||||| 74 laThrThrIleThrLeuThrLeuLeuAlaTyrGlnAlaThrLys++ 582305 : CCACCACCATCACCTTAACTTTGCTTGCTTACCAAGCAACGAAGgt............ : 582259 377 : Intron 1 >>>> IleHisAlaValAspThrTyrAlaAlaSerValValGlyTyrL : 390 2 bp ||||||!.!||||||||||||||||||||||||:!!||||||| ++IleHisGlyValAspThrTyrAlaAlaSerValIleGlyTyrL 582258 : .............agATACACGGTGTCGATACATACGCAGCATCGGTAATAGGCTACT : 581477 391 : euLeuTyrSerLeuGlyGlnValPheMetLeuCysIlePheGlyAsnArgLeuIleGl : 409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| euLeuTyrSerLeuGlyGlnValPheMetLeuCysIlePheGlyAsnArgLeuIleGl 581476 : TGTTGTACTCCCTGGGACAAGTTTTCATGCTCTGCATATTTGGAAACCGTCTCATTGA : 581420 410 : uGlu >>>> Target Intron 2 >>>> SerSerSerValMetGluAlaAlaT : 419 |||| 533 bp ||||||||||||||||||||||||| uGlu++ ++SerSerSerValMetGluAlaAlaT 581419 : AGAGgt.........................agAGCTCATCTGTGATGGAAGCCGCTT : 580857 420 : yrSerCysHisTrpTyrAspGlySerGluGluAlaLysThrPheValGlnIleValCy : 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| yrSerCysHisTrpTyrAspGlySerGluGluAlaLysThrPheValGlnIleValCy 580856 : ACTCTTGTCACTGGTACGACGGGTCAGAGGAGGCTAAGACTTTCGTACAAATCGTCTG : 580800 439 : sGlnGlnCysGlnLysAlaMetSerIleSerGlyAlaLysPhePheThrValSerLeu : 457 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| sGlnGlnCysGlnLysAlaMetSerIleSerGlyAlaLysPhePheThrValSerLeu 580799 : TCAACAGTGTCAAAAAGCGATGTCGATTTCAGGCGCGAAATTCTTCACCGTCTCTTTG : 580743 458 : AspLeuPheAlaSer >>>> Target Intron 3 >>>> ValLeuGlyAlaMe : 467 ||||||||||||||| 470 bp |||||||||||||| AspLeuPheAlaSer++ ++ValLeuGlyAlaMe 580742 : GATCTTTTCGCTTCGgt.........................agGTGCTGGGAGCTAT : 580243 468 : tValThrTyrPheMetValLeuValGlnLeuLys : 478 |||||||||||||||||||||||||||||||||| tValThrTyrPheMetValLeuValGlnLeuLys 580242 : GGTCACATACTTCATGGTGTTGGTGCAACTGAAG : 580208 vulgar: AmOr2 341 478 . KQ414731.1 582363 580207 - 619 M 34 102 5 0 2 I 0 738 3 0 2 M 35 105 5 0 2 I 0 529 3 0 2 M 52 156 5 0 2 I 0 466 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414731.1 exonerate:protein2genome:local gene 580208 582363 619 - . gene_id 2 ; sequence AmOr2 ; gene_orientation + KQ414731.1 exonerate:protein2genome:local cds 582262 582363 . - . KQ414731.1 exonerate:protein2genome:local exon 582262 582363 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 582260 582261 . - . intron_id 1 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 581520 582261 . - . intron_id 1 KQ414731.1 exonerate:protein2genome:local splice3 581520 581521 . - . intron_id 0 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 581415 581519 . - . KQ414731.1 exonerate:protein2genome:local exon 581415 581519 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 581413 581414 . - . intron_id 2 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 580882 581414 . - . intron_id 2 KQ414731.1 exonerate:protein2genome:local splice3 580882 580883 . - . intron_id 1 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 580726 580881 . - . KQ414731.1 exonerate:protein2genome:local exon 580726 580881 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 580724 580725 . - . intron_id 3 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 580256 580725 . - . intron_id 3 KQ414731.1 exonerate:protein2genome:local splice3 580256 580257 . - . intron_id 2 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 580208 580255 . - . KQ414731.1 exonerate:protein2genome:local exon 580208 580255 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local similarity 580208 582363 619 - . alignment_id 2 ; Query AmOr2 ; Align 582364 342 102 ; Align 581520 376 105 ; Align 580882 411 156 ; Align 580256 463 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 332 -> 394 Target range: 39938 -> 40124 333 : TyrIleAlaGluIleValThrGluGlnGlyLysLysValGlyGluLysPheTyrMetThr : 352 ||||||...:::||| ... ..!! !:!!|||:!!... ||| ! TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 353 : GluTrpTyrGlnLeuProHisLysThrAlaLeuGlyLeuValLeuIleIleSerArgSer : 372 .!.||||||.!.||||||! ||| !|||:!!..!||||||:!!:!:|||!!!|||:!! AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 373 : SerMetValIleLysIleThrAlaGlyLysLeuIleGlnIleSerIleAlaThrPheAla : 392 ..!:!! !.!!:!!|||||||||||||||!!!! !! .!!|||:!!! ! !||| ! GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsn 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAAC : 40116 393 : AlaVal : 394 |||||| AlaVal 40117 : GCTGTG : 40124 vulgar: AmOr26 332 394 . KQ414804.1 39938 40124 + 111 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40124 111 + . gene_id 1 ; sequence AmOr26 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39939 40124 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40124 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40124 111 + . alignment_id 1 ; Query AmOr26 ; Align 39939 333 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 328 -> 390 Target range: 39938 -> 40124 329 : TyrIleGlyGluIleLeuThrGluGlnCysMetLysIleGlyGluValValTyrMetThr : 348 |||||| :::||| ... !! !||||||:!! !!.!||| ! TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 349 : AspTrpTyrTyrLeuProAspLysThrIleLeuAsnLeuIleLeuIleIleLeuArgSer : 368 :!!|||||| !!|||||| ||| ! !:!!:::|||:!!:!!:!:|||! !|||:!! AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 369 : ThrValValValGlnIleThrAlaGlyLysLeuPheAsnMetSerIleTyrThrPheGly : 388 !||| ! !!||||||||||||||||||!!! ! !.!.|||:!! ! !|||..! GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsn 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAAC : 40116 389 : AspVal : 390 ! !||| AlaVal 40117 : GCTGTG : 40124 vulgar: AmOr27 328 390 . KQ414804.1 39938 40124 + 101 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40124 101 + . gene_id 1 ; sequence AmOr27 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39939 40124 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40124 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40124 101 + . alignment_id 1 ; Query AmOr27 ; Align 39939 329 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 328 -> 390 Target range: 39938 -> 40124 329 : TyrIleGlyGluIleLeuAlaGluGluSerMetLysValGlyGluValValTyrMetThr : 348 |||||| :::||| |||! !:!!|||:!! !!.!||| ! TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 349 : AspTrpTyrTyrLeuProAspLysThrIleLeuAspLeuThrLeuIleIleAlaArgSer : 368 :!!|||||| !!|||||| ||| ! !:!!...|||..!:!!:!:|||..!|||:!! AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 369 : SerValValValGlnIleThrAlaGlyLysLeuIleHisMetSerIleGlnThrPheThr : 388 ..!||| ! !!||||||||||||||||||!!!! !! !.!.|||:!!:!! !|||!.! GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsn 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAAC : 40116 389 : AspVal : 390 ! !||| AlaVal 40117 : GCTGTG : 40124 vulgar: AmOr28PSE 328 390 . KQ414804.1 39938 40124 + 105 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40124 105 + . gene_id 1 ; sequence AmOr28PSE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39939 40124 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40124 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40124 105 + . alignment_id 1 ; Query AmOr28PSE ; Align 39939 329 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1361 Query range: 13 -> 410 Target range: 232435 -> 235266 14 : ValSerTyrAlaArgAspTyrGluTyrSerIleGlnValAsnArgTrpLeuLeuLysP : 33 :!!!:! !.!!||||||||||||||||||||||||||||||||||||!!!|||! !| LeuAsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrP 232436 : TTGAACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACAC : 232493 34 : roIleGlyAlaTrpProAsnLeuThrLysAlaThrArgThrGluLysLeuLeuValLy : 52 ||!!:||||||||||||..!:!!|||:!!.!!:!!|||.!!:!!:!!||||||!.!|| roMetGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLy 232494 : CGATGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAA : 232550 53 : sLeuLeuAsnPheIleCysHisSerLeuIleIlePheThrValMetProCysIleMet : 71 |||||||!...!!! !||||||||||||!!:|||! !:!!:!!:!:|||||||||:!! sLeuLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValProCysIleLeu 232551 : ACTGTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTG : 232607 72 : TyrIlePheTyrGluAspGluSerLeuLysThrArgMetLysAlaIleGlyProThrS : 91 !:!|||.!.!:!|||||| !||||||:!! !|||||||||:!!|||||||||! !| PheIleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetS 232608 : TTCATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGA : 232667 92 : erHisTrpLeuMetGlyGluLeuAsnTyrCysCysLeuLeuMetArgAlaLysGluIl : 110 |||||!::||||||||||||||||||||||||||||||||| !:!|||!!.!!:|| erHisPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIl 232668 : GTCACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACAT : 232724 111 : eValTyrCysIleGluHisIleLysTyrAspTrpLysThrValArgArgAlaArgAsp : 129 |:!!||||||:!:|||!!.:!:||| ! ||||||::!!.!|||!:!!:! !! ! !! eLeuTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLysProValHis 232725 : CCTCTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCAT : 232781 130 : ArgGluLeuMetIleLysAsnAlaLysLeuGlyArgPheIleAlaCysIleAlaAlaL : 149 |||!!:||||||:!:|||||||||||||||||||||! ||||||||||||||||||! ArgAspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaP 232782 : CGTGATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGT : 232841 150 : euCysMetHisSerGlyIleMetSerTyrThrValIleThrGlyPheLysLysIleTh : 168 !!|||||||||!!!|||:!! ||| !! !:!!:!!||||||.!!:::! !! !|| heCysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerTh 232842 : TTTGCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCAC : 232898 169 : rPheGlnIleGlyAsnAspSerTyrSerMetTyrArgLeuProCysProPheTyrThr : 187 |||| ! :!:||||||!!:|||||||||||||||! !||||||||| !!||||||||| rPheTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThr 232899 : GTTCTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACG : 232955 188 : AsnLeuLeuAspValArgPheSerProMetAsnGluIleValPheAlaLeuGlnLeuL : 207 !!.|||:!!|||..!||||||||||||! !|||||||||:!!|||!.!||||||! !| LysLeuMetAspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysL 232956 : AAGCTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTC : 233015 208 : euSerGlyPheIleSerThrSerValThrValGlyAlaCysGlyLeuAlaAlaValLe : 226 |||||||||||||| !!.!|||||||||||||||||||||||||||!.!|||||||| euSerGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLe 233016 : TCTCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCT : 233072 227 : uAlaMetHisAlaCysGlyGlnPheAsnValValMetIleArgSerAspLysLeuVal : 245 ||||||||||||||||||||||.!.|||||||||||| !:!! !||| ! |||||| uAlaMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuVal 233073 : AGCGATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTG : 233129 246 : LysAspAsnAsnGluLysLysGlnAspGluGlnThrLeuHisLysLysLeuGlyPheI : 265 :!!! !||| !|||!!:|||::!..! !!!.!:!||||||||||||| ---------AspAlaLysGlyGlnGluGluArgValAlaGlnArgLysLeuGlyPheI 233130 : ---------GACGCGAAAGGGCAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCA : 233180 266 : leValGluHisHisLeuArgThrLeu{Se} >>>> Target Intron 1 >>>> : 274 ||||||||||||||||||||||||||{||} 1315 bp leValGluHisHisLeuArgThrLeu{Se}++ + 233181 : TCGTGGAGCATCATTTGCGTACATTA{AG}gt.........................a : 234522 275 : {r}LeuValTrpTyrMetGluLysValMetAsnMetIleCysLeuValGluLeuVal : 292 {|}!!!:!! !! !!!!:|||!!.|||||||||:!:||||||||||||||||||||| +{r}PheIleArgAsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuVal 234523 : g{T}TTTATACGGAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTA : 234576 293 : GlyCysThrMetAsnMetCysIleLeuLysTyrTyrPheLeuThr >>>> Target : 308 |||||||||:!!|||||||||!!:|||:!!||||||!!.|||||| 1 GlyCysThrLeuAsnMetCysMetLeuGluTyrTyrLeuLeuThr++ 234577 : GGATGCACGTTGAACATGTGCATGCTCGAGTATTATTTACTCACGgt........... : 234626 309 : Intron 2 >>>> GluLysSerLysThrIleLeuGlyIleTyrAlaIleValTyr : 321 89 bp |||||||||||| |||..! !|||!.!||||||||| ++GluLysSerLysGluLysLeuAlaSerTyrValIleValTyr 234627 : ..............agGAAAAgtcgaaggaaaaattagCTTCATACGTCATCGTGTAC : 234852 322 : AlaSerMetValPheAsnIlePheIlePheCysTyrIleAlaGluIleValThrGluG : 341 !.!||||||..!|||||||||||||||||||||||||||!.!|||! :!!||||||| ValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluG 234853 : GTGTCCATGACATTtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGC : 234912 342 : ln >>>> Target Intron 3 >>>> GlyLysLysValGlyGluLysPheTyr : 350 || 74 bp !!! ||||||||||||||| ! ||| ln++ ++CysThrLysValGlyGluLysValTyr 234913 : AGgt.........................agTGTACCAAAGTCGGAGAAAAAGTGTAC : 235013 351 : MetThrGluTrpTyrGlnLeuProHisLysThrAlaLeuGlyLeuValLeuIleIleS : 370 |||||||||||||||!:!||||||||||||||||||||||||||||||:!!||||||| MetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleS 235014 : ATGACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCT : 235073 371 : erArgSerSerMetValIleLysIleThrAlaGlyLysLeuIleGlnIleSerIleAl : 389 ||||||||||||||||||||||||||||||||||||||!!!:!!|||!!:|||:!!|| erArgSerSerMetValIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAl 235074 : CCAGGTCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGC : 235130 390 : aThrPheAlaAla >>>> Target Intron 4 >>>> ValPheLysAlaSerP : 399 |||||||!.!! ! 71 bp |||||||||||||||| aThrPheGlyAsp++ ++ValPheLysAlaSerP 235131 : AACATTTGGCGATgt.........................agGTATTTAAGGCGTCTT : 235231 400 : heAlaTyrLeuAsnMetIleArgThrIleAlaMet : 410 ||||||||!!!|||||||||||||||:!!|||||| heAlaTyrPheAsnMetIleArgThrValAlaMet 235232 : TCGCCTACTTCAACATGATCCGCACAGTTGCAATG : 235266 vulgar: AmOr26 13 410 . KQ414889.1 232435 235266 + 1361 M 232 696 G 3 0 M 25 75 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 33 99 5 0 2 I 0 185 3 0 2 M 34 102 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232436 235266 1361 + . gene_id 1 ; sequence AmOr26 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232436 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232436 233208 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235144 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235144 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 235145 235146 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 235145 235215 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 235214 235215 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 235216 235266 . + . KQ414889.1 exonerate:protein2genome:local exon 235216 235266 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232436 235266 1361 + . alignment_id 1 ; Query AmOr26 ; Align 232436 14 696 ; Align 233132 249 75 ; Align 234525 275 99 ; Align 234813 308 102 ; Align 234989 342 156 ; Align 235216 394 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 785 Query range: 14 -> 406 Target range: 262828 -> 265001 15 : SerTyrAlaArgAspTyrGluTyrSerIleGlnValAsnArgTrpLeuLeuLysProI : 34 |||!:!!.!!!! ! !!!:||||||:!:|||:!!|||||||||||||||||||||| SerPheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProI 262829 : AGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGA : 262886 35 : leGlyAlaTrpProAsnLeuThrLysAlaThrArgThrGluLysLeuLeuValLysLe : 53 |||||||||||||| ! !.!!..! !:!!|||! !|||::!:!!:!! ! || leGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPheLe 262887 : TCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCT : 262943 54 : uLeuAsnPheIleCysHisSerLeuIleIlePheThrValMetProCysIleMetTyr : 72 ||||! ! !!:!!|||:!!!!!||||||:!!! !||||||!!:|||! !|||:!::!! uLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeuHis 262944 : CTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCAT : 263000 73 : IlePheTyrGluAspGluSerLeuLysThrArgMetLysAlaIleGlyProThrSerH : 92 ||| !! |||! !|||!:!!!! ! ! !!:!:!!:!!!.!:!!|||||| !.!!! IleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyG 263001 : ATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTC : 263060 93 : isTrpLeuMetGlyGluLeuAsnTyrCysCysLeuLeuMetArgAlaLysGluIleVa : 111 !.|||!!!:!:||| !:!!|||||| !!! ||||||:!:!.!::!|||!!:||| lnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGl 263061 : AGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACA : 263117 112 : lTyrCysIleGluHisIleLysTyrAspTrpLysThrValArgArgAlaArgAspArg : 130 ! !|||:!::!!|||:!::!! ! |||||| ! !|||! !||| !..!|||!:! nGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAspGln 263118 : AGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAA : 263174 131 : GluLeuMetIleLysAsnAlaLysLeuGlyArgPheIleAlaCysIleAlaAlaLeuC : 150 ...:!!|||:!:||||||||||||! !||||||!:!:!:|||..! !..!|||:!!! ArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIleP 263175 : CGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCT : 263234 151 : ysMetHisSerGlyIleMetSerTyrThrValIleThrGlyPheLysLysIleThrPh : 169 !|||!!.!!!.!!||||||!!! ! !:!!:!!|||!.!|||! ! ! ..!.! heMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnValIl 263235 : TCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGAT : 263291 170 : eGlnIleGlyAsnAspSerTyrSerMetTyrArgLeuProCysProPheTyrThrAsn : 188 !:!! !||||||!!:!!! ! !:!: !! !|||||||||||| ! |||! !.!. eGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLysGlu 263292 : CGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAG : 263348 189 : LeuLeuAspValArgPheSerProMetAsnGluIleValPheAlaLeuGlnLeuLeuS : 208 :!!:!! ||| ! !:!|||! !||||||||| !!.!!||| !|||!!!|||| IleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuS 263349 : ATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGT : 263408 209 : erGlyPheIleSerThrSerValThrValGlyAlaCysGlyLeuAlaAlaValLeuAl : 227 ||||||||||| !|||:!!..!||||||||||||! !|||:!!.!!||||||!!!|| erGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAl 263409 : CGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGC : 263465 228 : aMetHisAlaCysGlyGlnPheAsnValValMetIleArgSerAspLysLeuValLys : 246 | |||||||||||||||!!.||||||:!!||| ! !!! ! :!!!!!||| aGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheVal--- 263466 : CGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTG--- : 263522 247 : AspAsnAsnGluLysLysGlnAspGluGlnThrLeuHisLysLysLeuGlyPheIleV : 266 |||.!....!:! ! :!!:!!:!!.!. !! ! !! :!!:!!||| ! |||| ---AsnGlnSerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleV 263523 : ---AACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCG : 263576 267 : alGluHisHisLeuArgThrLeu-----SerLeuValTrpTyrMet{Gl} >>>> T : 280 |||||||||||||||||..!|||#####!!!!!!|||||||||! { } alGluHisHisLeuArgValLeu#####ArgPheValTrpTyrThr{Tr}-+ 263577 : TTGAACATCATCTGAGAGTTCTGAGGTAAGATTTGTTTGGTACACT{TG}tt...... : 263627 281 : arget Intron 1 >>>> {u}LysValMetAsnMetIleCysLeuValGluLeuV : 292 67 bp {!}!!.||||||!:!! !||||||!!!||||||||| +-{p}AsnValMetSerThrIleCysPheValGluLeuP 263628 : ...................aa{G}AATGTGATGAGTACGATATGTTTCGTGGAGTTAT : 263726 293 : alGlyCysThrMetAsnMetCysIleLeuLysTyrTyrPheLeuThrGluLysSerLy : 311 !! !..!|||:!!:!!!!:|||!!:||| ||||||.!.||||||! ! !..!:! heLysAlaThrLeuAspIleCysMetLeuGlyTyrTyrIleLeuThrVal***GluGl 263727 : TCAAGGCTACGCTGGATATATGCATGCTAGGTTACTACATACTTACGGTATGAGAAGA : 263783 312 : sThr{I} >>>> Target Intron 2 >>>> {le}LeuGlyIleTyrAlaIle : 319 ! !{!} 773 bp { !}||| !! !||| !!!: uTyr{A}++ +-{sn}LeuThrThrTyrPheMet 263784 : ATAT{A}gt.........................aa{at}ttgacTACATATTTCATG : 264580 320 : ValTyrAlaSerMetValPheAsnIlePheIlePheCysTyrIleAlaGluIleValT : 339 :!! !|||||| ! !|||||||||:!!.!.|||||||||!.!||||||:!!| IleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuT 264581 : ATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGA : 264640 340 : hrGluGln >>>> Target Intron 3 >>>> GlyLysLysValGlyGluLys : 348 |||||||| 78 bp !!||||||||||||||| ! hrGluGln++ ++CysLysLysValGlyGluVal 264641 : CTGAGcaggt.........................agTGTAAGAAAGTTGGTGAGGTG : 264745 349 : PheTyrMetThrGluTrpTyrGlnLeuProHisLysThrAlaLeuGlyLeuValLeuI : 368 !!||||||:!!.!.|||||| ! ||||||:!!||| ! !|||! !|||:!!|||| ValTyrMetSerAsnTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLeuI 264746 : GTTTACATGTCGAATTGGTATTACTTACCCTACAAAGATATCCTTGATCTGATTCTCA : 264805 369 : leIleSerArgSerSerMetValIleLysIleThrAlaGlyLysLeuIleGlnIleSe : 387 |||||! !|||||||||:!!|||.!!|||.!!||||||||||||:!!:!!!!.!!:|| leIleLeuArgSerSerValValPheLysPheThrAlaGlyLysIleLeuHisMetSe 264806 : TCATTTTAAGATCCAGCGTGGTGTTTAAATTCACCGCTGGAAAGATACTTCACATGTC : 264862 388 : rIleAlaThrPheAlaAla >>>> Target Intron 4 >>>> ValPheLysA : 397 |!!: !||||||::!! ! 80 bp |||.!!|||: rMetTyrThrPheSerAsp++ ++ValIleLysS 264863 : CATGTACACATTCAGTGACgt.........................aggTAATCAAAT : 264972 398 : laSerPheAlaTyrLeuAsnMetIleArg : 406 !!||||||.!!|||||||||:!::!!||| erSerPheThrTyrLeuAsnLeuLeuArg 264973 : CCTCTTTCACGTACTTAAACTTACTTCGC : 265001 vulgar: AmOr26 14 406 . KQ414889.1 262828 265001 + 785 M 231 693 G 2 0 M 26 78 F 0 5 M 6 18 S 0 2 5 0 2 I 0 63 3 0 2 S 1 1 M 32 96 S 0 1 5 0 2 I 0 769 3 0 2 S 1 2 M 28 84 5 0 2 I 0 74 3 0 2 M 52 156 5 0 2 I 0 76 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262829 265001 785 + . gene_id 2 ; sequence AmOr26 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262829 263624 . + . KQ414889.1 exonerate:protein2genome:local exon 262829 263624 . + . insertions 0 ; deletions 2 ; frameshifts 5 KQ414889.1 exonerate:protein2genome:local splice5 263625 263626 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 263625 263691 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263690 263691 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 263692 263789 . + . KQ414889.1 exonerate:protein2genome:local exon 263692 263789 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263790 263791 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263790 264562 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264561 264562 . + . intron_id 1 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 264563 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264563 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264726 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 3 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265001 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265001 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262829 265001 785 + . alignment_id 2 ; Query AmOr26 ; Align 262829 15 693 ; Align 263522 248 78 ; Align 263605 274 18 ; Align 263693 281 96 ; Align 264565 314 84 ; Align 264727 342 156 ; Align 264963 394 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 640 Query range: 14 -> 404 Target range: 284502 -> 287252 15 : SerTyrAlaArgAspTyrGluTyrSerIleGlnValAsnArgTrpLeuLeuLysProI : 34 !!!!::! !! !|||!:: !||||||:!!|||:!!|||||||||!!!|||||||||| ThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProI 284503 : ACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGA : 284560 35 : leGlyAlaTrpProAsnLeuThrLysAlaThrArgThrGluLysLeuLeuValLysLe : 53 |||||!.!|||||| ! ! ! !.!|||! ! !||||||:!! ! ! !:! leGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValVa 284561 : TTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGT : 284617 54 : uLeuAsnPheIleCysHisSerLeuIleIlePheThrValMetProCys<->IleMet : 71 !||| !!.||| !! !! !|||||| !||| !:!!:!:|||||| :!: lLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCys 284618 : CCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGC : 284674 72 : TyrIlePheTyrGluAspGluSerLeuLysThrArgMetLysAlaIleGlyProThrS : 91 :!:.!! !!:!! !! ..!||| ! |||!:!!!:||| !||||||||| !| ThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuS 284675 : ACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGA : 284734 92 : erHisTrpLeuMetGlyGluLeuAsnTyrCysCysLeuLeuMetArgAlaLysGluIl : 110 || !!! :!!|||!.!! !:!!!!.|||! ! !|||:!! !|||!.! :!!|| erPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIl 284735 : GTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGAT : 284791 111 : eValTyrCysIleGluHisIleLysTyrAsp{Tr} >>>> Target Intron 1 : 121 |! ! ! |||:!::!! !!|||::: |||{||} 1012 bp eGlyGlnCysValLysAspIleArgAlaAsp{Tr}++ 284792 : CGGCCAATGCGTGAAGGACATTCGTGCGGAC{TG}gt..................... : 284828 122 : >>>> {p}LysThrValArgArgAlaArgAspArgGluLeuMetIleLysAsnAlaL : 138 {|} :!! !!! ::: ...:::||||||:::|||! ! !:!|||! +-{p}LeuSerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaA 284829 : ....ac{G}CTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTA : 285887 139 : ysLeuGlyArgPheIleAlaCysIleAlaAlaLeuCysMetHisSerGlyIleMetSe : 157 :!:!!||||||! !:!:||| !.!!..!||| !! !|||:!!|||||| !.!.! rgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePh 285888 : GAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTT : 285944 158 : rTyrThrValIleThrGlyPheLysLysIleThrPheGlnIleGlyAsnAspSerTyr : 176 !||||||..!:!:! ! !!!. ! !:!! ! :!!||| ! !|||!:! ! eTyrThrThrValMetProLeuCysThrValArgThrGluIle---IleAspAsnGlu 285945 : CTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATC---ATCGACAACGAG : 285998 177 : SerMetTyrArgLeuProCysProPheTyrThrAsnLeuLeuAspValArgPheSerP : 196 !!!:!! !! ! !!! !|||.!!||| !..!||||||||| !||| !|||| ThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerP 285999 : ACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCC : 286058 197 : roMetAsnGluIleValPheAlaLeuGlnLeuLeuSerGlyPheIleSerThrSerVa : 215 || ! !||||||||| !:!!|||! !|||:!!!.!|||:!!! ! !||||| roSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerVa 286059 : CGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGT : 286115 216 : lThrValGlyAlaCysGlyLeuAlaAlaValLeuAlaMetHisAlaCysGlyGlnPhe : 234 ||||||||||||||||.!!||||||||||||!!!!.!||||||!.!|||||||||||| lThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPhe 286116 : CACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTT : 286172 235 : AsnValValMetIleArgSerAspLysLeuValLysAspAsnAsnGluLysLysGlnA : 254 !..:!!:!!:!!! !!:! !|||||||||||| |||... :!! !!:!:!!! ArgIleLeuValThrLysLeuAspLysLeuVal---AspGlyValLysGlyArgLysG 286173 : AGGATACTTGTGACAAAGCTGGATAAGCTCGTC---GACGGAGTGAAAGGGAGGAAGG : 286229 255 : spGluGlnThrLeuHisLysLysLeuGlyPheIleValGluHisHisLeuArgThrLe : 273 !...|||! !.!.:!!::!|||||| !|||:!!||||||||||||!:!! !|| lyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLe 286230 : GGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACT : 286286 274 : u{Se} >>>> Target Intron 2 >>>> {r}LeuValTrpTyrMetGluLys : 281 |{.!} 408 bp {!}!!!:!!! ! ! !!:||| ! u{Gl}++ ++{y}PheIleSerGlnIleGluGly 286287 : G{GG}gt.........................ag{T}TTTATATCGCAAATCGAGGGG : 286718 282 : ValMetAsnMetIleCysLeuValGluLeuValGlyCysThrMetAsnMetCysIleL : 301 :!!:!:||| ||||||!!!||||||:!!:!!|||||||||:!!|||!!:|||.!!| LeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsnIleCysPheL 286719 : CTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTT : 286778 302 : euLysTyrTyrPheLeuThr >>>> Target Intron 3 >>>> GluLysSer : 310 || !||||||!!.|||||| 86 bp |||:!!||| euGlyTyrTyrLeuLeuThr++ -+GluGlnSer 286779 : TGGGATATTATTTACTGACGgt.........................ggGAGCAAAGT : 286891 311 : LysThrIleLeuGlyIle<->TyrAlaIleValTyrAlaSerMetValPheAsnIleP : 329 :!!|||||| ! !||| |||..!! :!! !.!|||.!...!||||||:!!| GluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerPheThrPheAsnValP 286892 : GAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTT : 286951 330 : heIlePheCysTyrIleAlaGluIleValThrGluGln >>>> Target Intron : 342 |||||.!!|||||||||!.!||||||:!!:!!|||||| 74 bp heIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286952 : TCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt.................. : 286992 343 : 4 >>>> GlyLysLysValGlyGluLysPheTyrMetThrGluTrpTyrGlnLeuP : 358 !! !||||||||| !..! !||||||! !!!:||||||!::|||| ++CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuP 286993 : .......agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGC : 287112 359 : roHisLysThrAlaLeuGlyLeuValLeuIleIleSerArgSerSerMetValIleLy : 377 || |||||||||! !||||||:!!||||||.!!:!! !|||!:! !||||| roGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLy 287113 : CAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAA : 287169 378 : sIleThrAlaGlyLysLeuIleGlnIleSerIleAlaThrPheAlaAlaValPheLys : 396 |:!!||||||||||||:!!|||.!.:!!|||:!!::!!:!|||..!::!||| !! sLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIle 287170 : ATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATC : 287226 397 : AlaSerPheAlaTyrLeuAsnMet : 404 !!:!!!.:!!|||! !:!!:!! IleAsnLeuSerTyrTyrHisLeu 287227 : ATAAATTTATCCTATTATCATTTG : 287252 vulgar: AmOr26 14 404 . KQ414889.1 284502 287252 + 640 M 55 165 G 0 3 M 51 153 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 50 150 G 1 0 M 73 219 G 1 0 M 27 81 S 0 2 5 0 2 I 0 404 3 0 2 S 1 1 M 33 99 5 0 2 I 0 82 3 0 2 M 9 27 G 0 3 M 25 75 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284503 287252 640 + . gene_id 3 ; sequence AmOr26 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284503 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284503 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286698 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286884 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 286883 286884 . + . intron_id 2 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 286885 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286885 286989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 4 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 3 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284503 287252 640 + . alignment_id 3 ; Query AmOr26 ; Align 284503 15 165 ; Align 284671 70 153 ; Align 285839 122 150 ; Align 285989 173 219 ; Align 286208 247 81 ; Align 286700 275 99 ; Align 286885 308 27 ; Align 286915 317 75 ; Align 287064 342 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 626 Query range: 14 -> 404 Target range: 278555 -> 280465 15 : SerTyrAlaArgAspTyrGluTyrSerIleGlnValAsnArgTrpLeuLeuLysProI : 34 !!!!:: !! !|||!:: !||||||:!!|||:!!|||||||||!!!|||||||||| ThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProI 278556 : ACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGA : 278613 35 : leGlyAlaTrpProAsnLeuThrLysAlaThrArgThrGluLysLeuLeuValLysLe : 53 |||||!.!|||||| ! ! ! !.!|||! ! !||||||:!! ! ! !:! leGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValVa 278614 : TTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGT : 278670 54 : uLeuAsnPheIleCysHisSerLeuIleIlePheThrValMetProCys<->IleMet : 71 !||| !!.||| !! !! !|||||| !||| !:!!:!:|||||| :!: lLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCys 278671 : CCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGC : 278727 72 : TyrIlePheTyrGluAspGluSerLeuLysThrArgMetLysAlaIleGlyProThrS : 91 :!:.!! !!:!! !! ..!||| ! |||!:!!!:||| !||||||||| !| ThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuS 278728 : ACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAA : 278787 92 : erHisTrpLeuMetGlyGluLeuAsnTyrCysCysLeuLeuMetArgAlaLysGluIl : 110 || !!! !|||!.! !:!!!!.|||! ! !|||:!! !|||!.! :!!|| erPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIl 278788 : GTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGAT : 278844 111 : eValTyrCysIleGluHisIleLysTyrAspTrpLys<-><-><->ThrValArgArg : 126 |! ! ! |||:!:.!. !!|||::: ||||||... :!! !|||::: eGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGln 278845 : CGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaa : 278901 127 : AlaArgAspArgGluLeuMetIleLysAsnAlaLysLeuGlyArgPheIleAlaCysI : 146 ...:::||||||:::|||! ! !:!|||!:!:!!||||||! !:!:||| !. GluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIleP 278902 : gaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCT : 278961 147 : leAlaAlaLeuCysMetHisSerGlyIleMetSerTyrThrValIleThrGlyPheLy : 165 !!::!||| !! !|||:!!|||||| !:!:! !||||||!.!:!:! ! !!!. heSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPh 278962 : TCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTT : 279018 166 : sLysIleThrPheGlnIleGlyAsnAspSerTyrSerMetTyrArgLeuProCysPro : 184 !:!! ! :!!||| ! !|||!:! ! !!!:!! !! ! !!! !||| eAlaValArgThrGluIle---IleAspAsnGluThrValArgSerGlnAlaPhePro 279019 : CGCAGTACGCACGGAGATC---ATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCG : 279072 185 : PheTyrThrAsnLeuLeuAspValArgPheSerProMetAsnGluIleValPheAlaL : 204 .!!||| !..!||||||||| !||| !|||||| ! !||||||||| !: IleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheM 279073 : ATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCA : 279132 205 : euGlnLeuLeuSerGlyPheIleSerThrSerValThrValGlyAlaCysGlyLeuAl : 223 !!|||! !|||:!!!.!|||:!!! ! !|||||||||||||||||||||.!!||| etGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIl 279133 : TGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGAT : 279189 224 : aAlaValLeuAlaMetHisAlaCysGlyGlnPheAsnValValMetIleArgSerAsp : 242 !||||||!!!!.!||||||!.!||||||||||||!..:!!:!!:!!! !!:! !||| eAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAsp 279190 : TGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGAT : 279246 243 : LysLeuValLysAspAsnAsnGluLysLysGlnAspGluGlnThrLeuHisLysLysL : 262 ||||||:!! |||... :!! !!:!:!!..! !...|||! !.!.:!!::!| LysLeuIle---AspGlyValLysGlyArgLysSerLeuSerThrHisGluGlnArgL 279247 : AAGCTCATC---GACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGAC : 279303 263 : euGlyPheIleValGluHisHisLeuArgThrLeu{Se} >>>> Target Intro : 274 ||||| !|||:!!||||||||||||!:!! !|||{.!} 571 bp euGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 279304 : TGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt................. : 279343 275 : n 1 >>>> {r}LeuValTrpTyrMetGluLysValMetAsnMetIleCysLeuVal : 289 {!}!!!:!!! ! ! !!:||| !:!!:!!||| ||||||!!!||| ++{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheVal 279344 : ........ag{T}TTTATATCGCAAATCGAGGGGCTCCTGAACGAAATATGTTTCGTC : 279955 290 : GluLeuValGlyCysThrMetAsnMetCysIleLeuLysTyrTyrPheLeuThr >> : 308 |||:!!:!!|||||||||:!!|||!!:|||.!!|||! !||||||!!.|||||| GluValIleGlyCysThrLeuAsnIleCysPheLeuThrTyrTyrLeuLeuThr++ 279956 : GAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGACATATTATTTACTCACGgt.. : 280014 309 : >> Target Intron 2 >>>> GluLysSerLysThrIleLeuGlyIleTyrAla : 318 89 bp :!!!!...! ! ! ! ! !! ||| ! ++GlnAsnAspAlaIleGlyThrPheThrTyrLeu 280015 : .......................agCAAAATGACGCTATAGGAACGTTCACGTATTTA : 280131 319 : IleValTyrAlaSerMetValPheAsnIlePheIlePheCysTyrIleAlaGluIleV : 338 !!: !! ! !|||:!:..!||||||:!!||||||.!!|||||||||!.!||||||: MetPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleL 280132 : ATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTC : 280191 339 : alThrGluGln >>>> Target Intron 3 >>>> GlyLysLysValGlyGlu : 347 !!:!!|||||| 74 bp !! !|||||||||! ! euSerGluGln++ ++CysLeuLysValGlyVal 280192 : TCTCCGAACaggt.........................agTGCTTAAAAGTCGGCGTG : 280292 348 : LysPheTyrMetThrGluTrpTyrGlnLeuProHisLysThrAlaLeuGlyLeuValL : 367 ..! !||||||! !!!:||||||!::|||||| |||! !|||! !||||||:!!| SerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleL 280293 : TCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATAC : 280352 368 : euIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysLeuIleGlnIl : 386 |||||.!!:!! !|||!:! !||||||:!!||||||||||||:!!|||.!.:! euIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLe 280353 : TGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCT : 280409 387 : eSerIleAlaThrPheAlaAlaValPheLysAlaSerPheAlaTyrLeuAsnMet : 404 !|||:!!::!!:!|||..!::!||| !! !!:!!!.:!!|||! !:!!:!! uSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280410 : CTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: AmOr26 14 404 . KQ414889.1 278555 280465 + 626 M 55 165 G 0 3 M 53 159 G 0 9 M 49 147 G 1 0 M 73 219 G 1 0 M 27 81 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 85 3 0 2 M 34 102 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278556 280465 626 + . gene_id 4 ; sequence AmOr26 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278556 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278556 279340 . + . insertions 12 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280100 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280099 280100 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280101 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280101 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278556 280465 626 + . alignment_id 4 ; Query AmOr26 ; Align 278556 15 165 ; Align 278724 70 159 ; Align 278892 123 147 ; Align 279039 173 219 ; Align 279258 247 81 ; Align 279913 275 99 ; Align 280101 308 102 ; Align 280277 342 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 618 Query range: 1 -> 273 Target range: 266577 -> 267387 2 : MetAsnGlnLeuAsnGluGlnSerValLeuMetProValSerTyrAlaArgAspTyrG : 21 :!!::! !:!! !.!.:!!|||:!!:!!!!: !!.!!:! !!!! !! ValSerThrMetAlaAsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerA 266578 : GTGTCCACGATGGCTAACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCG : 266635 22 : luTyrSerIleGlnValAsnArgTrpLeuLeuLysProIleGlyAlaTrpProAsnLe : 40 !:||||||:!:|||:!!|||||||||!!!|||||||||||||||||||||||| || spTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLe 266636 : ATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTT : 266692 41 : uThrLysAlaThrArgThrGluLysLeuLeuValLysLeuLeuAsnPheIleCysHis : 59 |:!! .!!:!!!:! !|||::!:!!:!! ! ! !|||! ! !!||||||:!! uSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyr 266693 : GTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTAC : 266749 60 : SerLeuIleIlePheThrValMetProCysIleMetTyrIlePheTyrGluAspGluS : 79 !!!! !|||:!:|||||||||!!:||||||:!:.!.:!!:!! !! |||||||||| CysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluS 266750 : TGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGA : 266809 80 : erLeuLysThrArgMetLysAlaIleGlyProThrSerHisTrpLeuMetGlyGluLe : 98 ||:!!:::|||!:!:!!|||!.!.!!|||||| !|||||||||!!!:!:|||! !:! erIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIl 266810 : GTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAAT : 266866 99 : uAsnTyrCysCysLeuLeuMetArgAlaLysGluIleValTyrCysIleGluHisIle : 117 !|||||| ! ||||||:!:|||::!||||||||| ! !|||:!!||||||!!: eAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMet 266867 : TAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATG : 266923 118 : LysTyrAspTrpLysThrValArgArgAlaArgAspArgGluLeuMetIleLysAsnA : 137 :!! ||||||!:!! !|||! !||| !!..!|||!:!:!!:!!|||:!:||||||| GlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnA 266924 : CAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACG : 266983 138 : laLysLeuGlyArgPheIleAlaCysIleAlaAlaLeuCysMetHisSerGlyIleMe : 156 ||!:!:!!||||||!:!|||||| .!!..!||| !! !|||!!.!!!|||:!!:! laArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLe 266984 : CGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCT : 267040 157 : tSerTyrThrValIleThrGlyPheLysLysIleThrPheGlnIleGlyAsnAspSer : 175 :.!!||| !|||||||||!.!|||! ! ! ||| ! :!!:!!||||||!!:!!! uGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThr 267041 : CGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACT : 267097 176 : TyrSerMetTyrArgLeuProCysProPheTyrThrAsnLeuLeuAspValArgPheS : 195 ! !:!::!!! !||||||||| !! !!|||! !!!.:!!:!!! ||| ! !| ArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrS 267098 : AGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCA : 267157 196 : erProMetAsnGluIleValPheAlaLeuGlnLeuLeuSerGlyPheIleSerThrSe : 214 |||||! !||||||||||||.!!!.!! !|||!!!:!!|||||||||||| !!.!|| erProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSe 267158 : GCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTC : 267214 215 : rValThrValGlyAlaCysGlyLeuAlaAlaValLeuAlaMetHisAlaCysGlyGln : 233 | !..!|||||||||! !.!!||||||||||||!!!||| ||||||||||||||| rSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGln 267215 : GAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAG : 267271 234 : PheAsnValValMetIleArgSerAspLysLeuValLysAspAsnAsnGluLysLysG : 253 .!.!:!|||:!!|||!!: !!! ! ! :!!!!!||| |||......!:! ! . LeuSerValLeuMetMetTrpIleLysGluPheVal------AsnArgSerArgAspS 267272 : CTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTG------AACCGATCCAGAGATA : 267325 254 : lnAspGluGlnThrLeuHisLysLysLeuGlyPheIleValGluHisHisLeuArgTh : 272 ..:!!:!!.!...!! ! ! ! |||:!!||| ! :!!||||||||||||||||||.. erAsnLysAsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgVa 267326 : GCAATAAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGT : 267382 273 : rLeu : 273 !||| lLeu 267383 : TTTG : 267387 vulgar: AmOr26 1 273 . KQ414889.1 266577 267387 + 618 M 244 732 G 2 0 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266578 267387 618 + . gene_id 5 ; sequence AmOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266578 267387 . + . KQ414889.1 exonerate:protein2genome:local exon 266578 267387 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 266578 267387 618 + . alignment_id 5 ; Query AmOr26 ; Align 266578 2 732 ; Align 267310 248 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 611 Query range: 4 -> 274 Target range: 259721 -> 260525 5 : LeuAsnGluGlnSerValLeuMetProValSerTyrAlaArgAspTyrGluTyrSerI : 24 :!!!...!.:!!||||||!!!:!: !..!|||!:!.!!!!! !! !!!:||||||: MetThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerL 259722 : ATGACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCC : 259779 25 : leGlnValAsnArgTrpLeuLeuLysProIleGlyAlaTrpProAsnLeuThrLysAl : 43 !!||| !!|||||||||!!!|||||||||||||||||||||||| !! !:!!....! euGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 259780 : TCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCAC : 259836 44 : aThrArgThrGluLysLeuLeuValLysLeuLeuAsnPheIleCysHisSerLeuIle : 62 !|||||| !||||||:!!:!! ! :!!|||! !|||||||||:!!||| !||| rThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIle 259837 : GACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATA : 259893 63 : IlePheThrValMetProCysIleMetTyrIlePheTyrGluAspGluSerLeuLysT : 82 :!: !!|||:!!!!:||||||:!!:!::!!!!:.!. !||| ! ||||||||| ! ! LeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrM 259894 : CTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACA : 259953 83 : hrArgMetLysAlaIleGlyProThrSerHisTrpLeuMetGlyGluLeuAsnTyrCy : 101 !!:!! !|||!.!:!!|||||| !!!!||||||!!!:!:||| :!!|||||| etLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrTh 259954 : TGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACAC : 260010 102 : sCysLeuLeuMetArgAlaLysGluIleValTyrCysIleGluHisIleLysTyrAsp : 120 ||||||:!!|||!.!!:!!!:|||:!! !|||:!:||||||:!::!! !!||| rThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAsp 260011 : AACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGAT : 260067 121 : TrpLysThrValArgArgAlaArgAspArgGluLeuMetIleLysAsnAlaLysLeuG : 140 |||!:!! !:!!! !|||! !!:!|||!:!.!.:!!|||:!:!:! !!||||||!!!| TrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheG 260068 : TGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCG : 260127 141 : lyArgPheIleAlaCysIleAlaAlaLeuCysMetHisSerGlyIleMetSerTyrTh : 159 |||||!:!:!!|||..! !..!||| !! !:!!!!..!!|||:!!:!!!!!!:! lyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCy 260128 : GCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTG : 260184 160 : rValIleThrGlyPheLysLysIleThrPheGlnIleGlyAsnAspSerTyrSerMet : 178 !:!!:!!|||! !!!.!..! ! ..!.!.|||:!:||||||!!:!!! ! !:!: sLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal 260185 : TTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTT : 260241 179 : TyrArgLeuProCysProPheTyrThrAsnLeuLeuAspValArgPheSerProMetA : 198 :!!! !||||||||| !! ! |||! !.!.|||:!!:!!|||!.! !|||||||||| HisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetA 260242 : CATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGA : 260301 199 : snGluIleValPheAlaLeuGlnLeuLeuSerGlyPheIleSerThrSerValThrVa : 217 |||||||||||.!!!.!:!!|||!!!:!!|||||||||||| !!.!||| !||||| snGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrVa 260302 : ACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGT : 260358 218 : lGlyAlaCysGlyLeuAlaAlaValLeuAlaMetHisAlaCysGlyGlnPheAsnVal : 236 |||| !! !.!!|||||||||||||||.!! |||||||||||||||!!.|||||| lGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnVal 260359 : TGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTG : 260415 237 : ValMetIleArgSerAspLysLeuValLysAspAsnAsnGluLysLysGlnAspGluG : 256 :!!||| ! !!! ! :!!!!!||| ! !!::::!...!.!:!||| :!!: LeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLys------LysL 260416 : CTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAG------AAAA : 260469 257 : lnThrLeuHisLysLysLeuGlyPheIleValGluHisHisLeuArgThrLeuSer : 274 !!.!!! ! !|||:!!:!!||| ! |||||||||||||||||||||.!!|||!!! ysAlaProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeuThr 260470 : AGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTCACG : 260525 vulgar: AmOr26 4 274 . KQ414889.1 259721 260525 + 611 M 248 744 G 2 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259722 260525 611 + . gene_id 6 ; sequence AmOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259722 260525 . + . KQ414889.1 exonerate:protein2genome:local exon 259722 260525 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 259722 260525 611 + . alignment_id 6 ; Query AmOr26 ; Align 259722 5 744 ; Align 260466 255 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 607 Query range: 20 -> 273 Target range: 274380 -> 275133 21 : GluTyrSerIleGlnValAsnArgTrpLeuLeuLysProIleGlyAlaTrpProAsnL : 40 !!:||||||:!:|||:!!|||||||||!!!|||||||||||||||||||||||| AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuA 274381 : GACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAG : 274438 41 : euThrLysAlaThrArgThrGluLysLeuLeuValLysLeuLeuAsnPheIleCysHi : 59 !:!! .!!|||!:! !|||::!:!!||| ! ! |||||| |||:::|||:! laSerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTy 274439 : CCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctA : 274495 60 : sSerLeuIleIlePheThrValMetProCysIleMetTyrIlePheTyrGluAspGlu : 78 !!!!!!!|||:!!! !||||||!!:||| !!|||.!.:!!|||.!. ! !|||||| rCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGlu 274496 : CTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAA : 274552 79 : SerLeuLysThrArgMetLysAlaIleGlyProThrSerHisTrpLeuMetGlyGluL : 98 |||||| ! !!:!:!!||| !:!!|||||| !.!!||||||!!!!!:|||! !: SerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyI 274553 : AGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAA : 274612 99 : euAsnTyrCysCysLeuLeuMetArgAlaLysGluIleValTyrCysIleGluHisIl : 117 !!|||||| ! ||||||:!:|||::!||||||||| ! !|||:!:||||||!! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 274613 : TTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACAT : 274669 118 : eLysTyrAspTrpLysThrValArgArgAlaArgAspArgGluLeuMetIleLysAsn : 136 ::!! ||||||!:!! !|||! !||| !!..!|||!:!:!!:!!|||:!:|||||| tGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsn 274670 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAAC : 274726 137 : AlaLysLeuGlyArgPheIleAlaCysIleAlaAlaLeuCysMetHisSerGlyIleM : 156 ||||||:!!||||||!:!:!!||| !.!!..!||| !! !|||!!.!!!|||:!!: AlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 274727 : GCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTC : 274786 157 : etSerTyrThrValIleThrGlyPheLysLysIleThrPheGlnIleGlyAsnAspSe : 175 !:!!!||| !|||||||||!.!|||! ! ! ||| !!|||:!!||||||!!:!! euCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluTh 274787 : TCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGAC : 274843 176 : rTyrSerMetTyrArgLeuProCysProPheTyrThrAsnLeuLeuAspValArgPhe : 194 ! !!!:!!:!!! !||||||||| ! !|||! !!!.:!!:!!! ||| ! rArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThr 274844 : CAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACG : 274900 195 : SerProMetAsnGluIleValPheAlaLeuGlnLeuLeuSerGlyPheIleSerThrS : 214 ||||||! !||||||||||||.!!|||! !|||!!!:!!|||||||||||| !!.!| SerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnS 274901 : AGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATT : 274960 215 : erValThrValGlyAlaCysGlyLeuAlaAlaValLeuAlaMetHisAlaCysGlyGl : 233 || !.!!|||||||||! !.!!||||||||||||!!!||| ||||||! !||||| erSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGl 274961 : CGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCA : 275017 234 : nPheAsnValValMetIleArgSerAspLysLeuValLysAspAsnAsnGluLysLys : 252 |!!.!:!|||:!!|||||| !!! ! !:!!!!!||| |||:!!...!:! ! nLeuSerValLeuMetIleTrpIleThrGluPheVal------AsnHisSerArgAsp 275018 : GTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTG------AATCATTCCAGGGAt : 275068 253 : GlnAspGluGlnThrLeuHisLysLysLeuGlyPheIleValGluHisHisLeuArgT : 272 |||::::::...... ...:!!:!!||| ! :!!||||||||||||||||||. GlnAsnLysAsnValTyrPheSerGluIleGlyValValValGluHisHisLeuArgV 275069 : cagaataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGG : 275128 273 : hrLeu : 273 .!||| alLeu 275129 : TACTC : 275133 vulgar: AmOr26 20 273 . KQ414889.1 274380 275133 + 607 M 225 675 G 2 0 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274381 275133 607 + . gene_id 7 ; sequence AmOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274381 275133 . + . KQ414889.1 exonerate:protein2genome:local exon 274381 275133 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 274381 275133 607 + . alignment_id 7 ; Query AmOr26 ; Align 274381 21 675 ; Align 275056 248 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 549 Query range: 1 -> 273 Target range: 256592 -> 257402 2 : MetAsnGlnLeuAsnGluGlnSerValLeuMetProValSerTyrAlaArgAspTyrG : 21 |||!:! !:!!!.!.!.:!!! !!.!:!!:!: !..!!:!!:! !!!! !! !! MetSerThrMetThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrSerA 256593 : ATGAGCACGATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCG : 256650 22 : luTyrSerIleGlnValAsnArgTrpLeuLeuLysProIleGlyAlaTrpProAsnLe : 40 !:||||||:!!|||:!!|||||||||!!!|||||||||||||||||||||||| !! spTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSe 256651 : ATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTC : 256707 41 : uThrLysAlaThrArgThrGluLysLeuLeuValLysLeuLeuAsnPheIleCysHis : 59 !:!!....!!|||! ! !|||::! !:!! !! :!!||||||.!!:!!|||:!! rSerSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyr 256708 : GTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTAT : 256764 60 : SerLeuIleIlePheThrValMetProCysIleMetTyrIlePheTyrGluAspGluS : 79 .!!! !|||:!:||||||:!!!!:||||||:!::!::!!:!!||| !!!:|||!!:| GlySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspS 256765 : GGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACA : 256824 80 : erLeuLysThrArgMetLysAlaIleGlyProThrSerHisTrpLeuMetGlyGluLe : 98 ||!!! ! ::::::||| ...||||||! !|||||||||:!!!!:.!! erPheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAl 256825 : GTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGC : 256881 99 : uAsnTyrCysCysLeuLeuMetArgAlaLysGluIleValTyrCysIleGluHisIle : 117 !|||||| ! ||||||:!:!:!!.!|||!!:||| !||||||:!!||||||||| aAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIle 256882 : CAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATA : 256938 118 : LysTyrAspTrpLysThrValArgArgAlaArgAspArgGluLeuMetIleLysAsnA : 137 :!! ||||||!:!! !|||||||||! !!:!|||!:!:!!:!!|||!!:||||||| GluThrAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnA 256939 : GAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACG : 256998 138 : laLysLeuGlyArgPheIleAlaCysIleAlaAlaLeuCysMetHisSerGlyIleMe : 156 ||!:!!!!||||||!:!:!:||| .!!..!||| ! !|||!!.||||||:::.. laArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPh 256999 : CGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgtttt : 257055 157 : tSerTyrThrValIleThrGlyPheLysLysIleThrPheGlnIleGlyAsnAspSer : 175 . ::: ||| :!!!.!.!.!!.! ! ! !.!!!!.:!:||||||!!:!!! eCysPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThr 257056 : ctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACA : 257112 176 : TyrSerMetTyrArgLeuProCysProPheTyrThrAsnLeuLeuAspValArgPheS : 195 ! !:!! !|||||| ! !! ! |||! !!!.||||||:!!||| ! | ThrIleValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnS 257113 : ACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGA : 257172 196 : erProMetAsnGluIleValPheAlaLeuGlnLeuLeuSerGlyPheIleSerThrSe : 214 |||||! !|||||||||||| !! !:!!||| !! !|||..!.!!|||:!!|||!! erProThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrTh 257173 : GTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTAC : 257229 215 : rValThrValGlyAlaCysGlyLeuAlaAlaValLeuAlaMetHisAlaCysGlyGln : 233 ! !||||||.!! !! !.!!||||||||||||!!!|||! ||||||! !|||||| rSerThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGln 257230 : TAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAG : 257286 234 : PheAsnValValMetIleArgSerAspLysLeuValLysAspAsnAsnGluLysLysG : 253 !!.!.!|||:!!||| !!! ! :!!!!!||| |||.!...!!:!!!.! LeuThrValLeuMetSerTrpIleThrGluPheVal------AsnGluSerArgAsnA 257287 : TTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTG------AATGAGTCGAGGAATC : 257340 254 : lnAspGluGlnThrLeuHisLysLysLeuGlyPheIleValGluHisHisLeuArgTh : 272 :::::::: !|||:!!:!!||| ! |||||||||||||||||||||.. rgGluLysThrPheProPheLysGlnIleGlyValIleValGluHisHisLeuArgVa 257341 : GggagaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGT : 257397 273 : rLeu : 273 !||| lLeu 257398 : GCTG : 257402 vulgar: AmOr26 1 273 . KQ414889.1 256592 257402 + 549 M 244 732 G 2 0 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256593 257402 549 + . gene_id 8 ; sequence AmOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256593 257402 . + . KQ414889.1 exonerate:protein2genome:local exon 256593 257402 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 256593 257402 549 + . alignment_id 8 ; Query AmOr26 ; Align 256593 2 732 ; Align 257325 248 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 530 Query range: 7 -> 341 Target range: 208170 -> 210774 8 : GlnSerValLeuMetProValSerTyrAlaArgAspTyrGluTyrSerIleGlnValA : 27 ::!..!:!!!!!:!: ! !!:!||| !!.!||| ...!:!!:!:!!!:::!!| ArgGlnIlePheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuA 208171 : AGACAAATATTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGA : 208228 28 : snArgTrpLeuLeuLysProIleGlyAlaTrpProAsnLeuThrLysAlaThrArgTh : 46 || !||| !|||||| !||||||:!!||||||!..! !! ! ! !:!! !! snValTrpThrLeuLysIleIleGlySerTrpProArgSerIleAspArgSerTrpLe 208229 : ACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTT : 208285 47 : rGluLysLeuLeuValLysLeuLeuAsnPheIleCysHisSerLeuIleIlePheThr : 65 !|||!!. !! ! !! ||||||||| ! :!! !!|||!!!|||:!! !|||! ! uGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIle 208286 : AGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATC : 208342 66 : ValMetProCysIleMetTyrIlePheTyrGluAspGluSerLeuLysThrArgMetL : 85 |||!!:||| ! !|||!:! .!! !! !! !|||..!!!! ! !!:!:!:| ValIleProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuL 208343 : GTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAA : 208402 86 : ysAlaIleGlyProThrSerHisTrpLeuMetGlyGluLeuAsnTyrCysCysLeuLe : 104 || ! !.!! !! !||| !!:::!!|||!.! !!!.||| !:!! ysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetTh 208403 : AGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGAC : 208459 105 : uMetArgAlaLysGluIleValTyrCysIleGluHisIleLysTyrAspTrpLysThr : 123 !:!:|||! ! !!:||| ! ! |||:!!|||:!!:!!:!! !||||||!:!!.! rValArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsn 208460 : TGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAAC : 208516 124 : ValArgArgAlaArgAspArgGluLeuMetIleLysAsnAlaLysLeuGlyArgPheI : 143 |||..!!.!! !..!||||||:!!:!!|||:!: ! ||||||!..!!!!.!||| : ValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysL 208517 : GTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAAC : 208576 144 : leAlaCysIleAlaAlaLeuCysMetHisSerGlyIleMetSerTyrThrValIleTh : 162 !: ! |||..!!.! !! !|||:!!.!!|||:::::: ||| :!! ! euIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLe 208577 : TGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTT : 208633 163 : rGlyPheLysLysIleThrPheGlnIleGlyAsnAspSerTyrSerMetTyrArgLeu : 181 ! !.!!! ::! !! ! !! ! !..!! !!:!! !!! |||||| uProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeu 208634 : GCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTG : 208690 182 : ProCysProPheTyrThrAsnLeuLeuAspValArgPheSerProMetAsnGluIleV : 201 !! !||| !! !! ! !:!!||||||||||||!:!||||||:!!||||||||| ValTyrProValProLysPheIleLeuAspValArgTyrSerProValAsnGluIleP 208691 : GTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTT : 208750 202 : alPheAlaLeuGlnLeuLeuSerGlyPheIleSerThrSerValThrValGlyAlaCy : 220 !!!:!.!!:!!||||||||||||||||||:!!:!! !!:!:!!|||||||||||||| heTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCy 208751 : TTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTG : 208807 221 : sGlyLeuAlaAlaValLeuAlaMetHisAlaCysGlyGlnPheAsnValValMetIle : 239 |||||||||||||:!!||||||||||||||||||||||||.!..!.:!!:!!||| ! sGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSer 208808 : CGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCC : 208864 240 : ArgSerAspLysLeuValLysAspAsnAsnGluLysLysGlnAspGluGlnThrLeuH : 259 !!! !!!:||||||||| :!!! !::!:!!.!.!!:|||:!!!.!||| TrpMetGluLysLeuVal---------AspGlyArgGluAspGluGluLysAsnLeuA 208865 : TGGATGGAGAAGTTGGTC---------GATGGACGGGAGGACGAGGAGAAGAATTTGG : 208915 260 : isLysLysLeuGlyPheIleValGluHisHisLeuArgThrLeu{Se} >>>> Tar : 274 !!:!!!:!|||!.! !|||||||||!!.|||:!!|||..!:!!{!:} spGlnArgLeuAlaAsnIleValGluGlnHisValArgValIle{As}++ 208916 : ATCAGAGGTTGGCTAATATCGTGGAGCAGCATGTTCGAGTGATC{AA}gt........ : 208964 275 : get Intron 1 >>>> {r}LeuValTrpTyrMetGluLysValMetAsnMetIle : 286 1536 bp {!}!!!:!! ! |||!!.:!!:!!:!! !||| ++{n}PheIleAlaLeuThrGluAsnLeuLeuHisGluIle 208965 : .................ag{T}TTTATAGCTCTGACAGAGAACCTCCTGCACGAGATA : 210532 287 : CysLeuValGluLeuValGlyCysThrMetAsnMetCysIleLeuLysTyrTyrPhe : 306 ! |||:!!|||:!!||||||||||||:!!|||||||||.!!||| |||||| SerLeuIleGluMetValGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThr- 210533 : TCATTGATAGAAATGGTGGGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGa : 210592 307 : >>>> Target Intron 2 >>>> LeuThrGluLysSerLysThrIleLeuGly : 315 72 bp ! !!!:...!.! ! !!||| !.!! + ++GluTrpAspSerLysAspProIleSerSer 210593 : t.........................agGAATGGGACTCTAAAGACCCTATCAGCAGT : 210691 316 : Ile<->TyrAlaIleValTyrAlaSerMetValPheAsnIlePheIlePheCysTyrI : 334 :!: ||| !:!!:!! !.!!|||:!:..!||||||||||||||||||||||||| LeuThrTyrIleValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrI 210692 : CTGACGTACATAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACA : 210751 335 : leAlaGluIleValThrGluGln : 341 ||!.!|||:!::!!.!!|||||| leGlyGluValLeuAlaGluGln 210752 : TCGGTGAAGTGTTGGCTGAACAg : 210774 vulgar: AmOr26 7 341 . KQ414889.1 208170 210774 + 530 M 238 714 G 3 0 M 25 75 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 31 93 5 0 2 I 0 68 3 0 2 M 11 33 G 0 3 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208171 210774 530 + . gene_id 9 ; sequence AmOr26 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208171 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208171 208961 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210591 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210591 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210592 210593 . + . intron_id 2 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 210592 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208171 210774 530 + . alignment_id 9 ; Query AmOr26 ; Align 208171 8 714 ; Align 208885 249 75 ; Align 210499 275 93 ; Align 210664 306 33 ; Align 210700 317 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 468 Query range: 5 -> 238 Target range: 217126 -> 217825 6 : AsnGluGlnSerValLeuMetProValSerTyrAlaArgAspTyrGluTyrSerIleG : 25 !!.||||||||| ! !! ! !...||| :::::: ... ||||||| LysGluGlnSerProArgThrAspTyrGluTyrGluLysAsnIleAsnLeuSerIleG 217127 : AAGGAACAATCCCCCAGAACCGACTACGAgtacgagaaaaatataaatctcaGTATCC : 217184 26 : lnValAsnArgTrpLeuLeuLysProIleGlyAlaTrpProAsnLeuThrLysAlaTh : 44 || !|||||||||||||||||||||!!:||| !|||||||||! ! !! .!!|| lnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnSerArgThrThrTh 217185 : AATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACTCACGTACCACCAC : 217241 45 : rArgThrGluLysLeuLeuValLysLeuLeuAsnPheIleCysHisSerLeuIleIle : 63 ||||:!!..!|||:!!||| !||||||:!!||| !:!!|||:!!.!!||||||! ! rArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSer 217242 : CAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTACGGTTTGATAAGC : 217298 64 : PheThrValMetProCysIleMetTyrIlePheTyrGluAspGluSerLeuLysThrA : 83 ||| ! !!:!:|||||| !||||||:!:||| !|||! !|||..!||| ! !! PheLeuPheValProCysSerMetTyrValPheLeuGluValGluAspLeuTyrAspL 217299 : TTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAGATCTCTACGACA : 217358 84 : rgMetLysAlaIleGlyProThrSerHisTrpLeuMetGlyGluLeuAsnTyrCysCy : 102 :!:!!||| !.!!|||||| !! ! !!! :!!|||!.! :!!!!.|||! !! ysLeuLysLeuPheGlyProLeuIlePheCysValMetAlaPheValLysTyrTyrSe 217359 : AGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTC : 217415 103 : sLeuLeuMetArgAlaLysGluIleValTyrCysIleGluHisIleLysTyrAspTrp : 121 !|||:!!:!:!.! ! !!!:||| ! ! |||:!:..!...|||:!! |||||| rLeuIleValHisLysAlaAspIleArgGluCysValArgArgIleGluArgAspTrp 217416 : TCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGG : 217472 122 : LysThrValArgArgAlaArgAspArgGluLeuMetIleLysAsnAlaLysLeuGlyA : 141 !:!!.!|||||| !!! !!:!||||||||| !|||||| !||||||!!.!!!|||| ArgAsnValArgCysGluLysAspArgGluAlaMetIleValAsnAlaAsnPheGlyA 217473 : AGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCC : 217532 142 : rgPheIleAlaCysIleAlaAlaLeuCysMetHisSerGlyIleMetSerTyrThrVa : 160 || :!:!.! :!!..!.!!!!!! !|||:!!||||||...::: ||| :: rgLysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIl 217533 : GTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcgttttttattacat : 217589 161 : lIleThrGlyPheLysLysIleThrPheGlnIleGlyAsnAspSerTyrSerMetTyr : 179 ! !! ! !.!!!.. ! ! !.!!! ! ! !|||! !:! !!!!.!. ! eAlaIleProIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuThrPheIle 217590 : CGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTTATT : 217646 180 : ArgLeuProCysProPheTyrThrAsnLeuLeuAspValArgPheSerProMetAsnG : 199 ! !||| !! !|||||| ! ! !!:!!:!!|||..!|||!:!!!!|||! !|||| ProLeuValPheProPheThrLysTyrIleIleAspThrArgTyrThrProThrAsnG 217647 : CCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCTACGAACG : 217706 200 : luIleValPheAlaLeuGlnLeuLeuSerGlyPheIleSerThrSerValThrValGl : 218 ||||||||||| !|||||||||:!!:!!||| !:!:! ! !.!!:!!||| !!. luIleValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAl 217707 : AAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGC : 217763 219 : yAlaCysGlyLeuAlaAlaValLeuAlaMetHisAlaCysGlyGlnPheAsnValVal : 237 !||||||.!!|||||||||!.!!!!|||:!:|||||||||||||||.!!.!.|||:!! aAlaCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGluValLeu 217764 : TGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTG : 217820 238 : Met : 238 ||| Met 217821 : ATG : 217825 vulgar: AmOr26 5 238 . KQ414889.1 217126 217825 + 468 M 233 699 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217127 217825 468 + . gene_id 10 ; sequence AmOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217127 217825 . + . KQ414889.1 exonerate:protein2genome:local exon 217127 217825 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217127 217825 468 + . alignment_id 10 ; Query AmOr26 ; Align 217127 6 699 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 459 Query range: 7 -> 238 Target range: 221336 -> 222029 8 : GlnSerValLeuMetProValSerTyrAlaArgAspTyrGluTyrSerIleGlnValA : 27 ...|||..!! !:!: ! !..!||| !! !:!! :!!! |||:!:|||:!!! SerSerThrArgValGluTyrAspTyrLysThrAsnValLysLeuSerValGlnLeuS 221337 : TCTTCGACTCGTGTTGAATACGATTACAAGACGAACGTGAAATTGAGCGTGCAATTGA : 221394 28 : snArgTrpLeuLeuLysProIleGlyAlaTrpProAsnLeuThrLysAlaThrArgTh : 46 :!||||||:!!|||||||||||||||!.!|||||||||! !.!!!!. !:!!! !.. erArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaAsnIleSerThrVa 221395 : GCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGT : 221451 47 : rGluLysLeuLeuValLysLeuLeuAsnPheIleCysHisSerLeuIleIlePheThr : 65 !|||!:!! !||| ! !|||:!!||| !!:!!|||:!!|||||||||! ||| ! lGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLeuIleThrPheLeu 221452 : AGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTC : 221508 66 : ValMetProCysIleMetTyrIlePheTyrGluAspGluSerLeuLysThrArgMetL : 85 :!!:!:||||||! !:!:|||:!:.!! !|||! |||..!:!! ! !.!|||!!:| LeuValProCysSerLeuTyrValIleLeuGluValGluAspValTyrAsnArgIleL 221509 : TTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCA : 221568 86 : ysAlaIleGlyProThrSerHisTrpLeuMetGlyGluLeuAsnTyrCysCysLeuLe : 104 || !:!:|||||| !||| !!! :!!|||!.! |||!!.||| ! |||:! ysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIl 221569 : AATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGAT : 221625 105 : uMetArgAlaLysGluIleValTyrCysIleGluHisIleLysTyrAspTrpLysThr : 123 !:!: !! !!!.!!:||| ! ! |||||||||!.!|||:!!!::|||||||||!.! eLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTrpAspTrpLysAsn 221626 : ACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAAT : 221682 124 : ValArgArgAlaArgAspArgGluLeuMetIleLysAsnAlaLysLeuGlyArgPheI : 143 :!!! ! !:!!!:!|||!:!!!::!!||||||:!!||||||! !!!|||||| : IleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgL 221683 : ATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGAT : 221742 144 : leAlaCysIleAlaAlaLeuCysMetHisSerGlyIleMetSerTyrThrValIleTh : 162 !: ! |||..!.!!!!!! !|||:!!||||||...::: ||| ::! !! euIleMetIleCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIl 221743 : TGATCATGATCTGCACATTTTTCATGTACAGTggtttcgttttttattacatAGCCAT : 221799 163 : rGlyPheLysLysIleThrPheGlnIleGlyAsnAspSerTyrSerMetTyrArgLeu : 181 ! !|||!.. ! !! !.!!! !:!! ::: :::... ! !:!! eProPheSerValGlyLysIleProAlaGlnAspValAsnValThrPheIleProMet 221800 : ACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATG : 221856 182 : ProCysProPheTyrThrAsnLeuLeuAspValArgPheSerProMetAsnGluIleV : 201 !! !||||||! ! ! !:!!:!!|||..!|||!:!||||||:!:|||||||||: ValPheProPheSerArgPheIleValAspThrArgTyrSerProValAsnGluIleL 221857 : GTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTC : 221916 202 : alPheAlaLeuGlnLeuLeuSerGlyPheIleSerThrSerValThrValGlyAlaCy : 220 !!|||:!!||||||:!!:!!:!!||| !:!:! ! !|||:!!||| !!.!||||| euPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCy 221917 : TGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTG : 221973 221 : sGlyLeuAlaAlaValLeuAlaMetHisAlaCysGlyGlnPheAsnValValMet : 238 |.!!|||!.!|||:!!!!!|||:!!|||||||||||||||.!..!.|||:!!||| sSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMet 221974 : CAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATG : 222029 vulgar: AmOr26 7 238 . KQ414889.1 221336 222029 + 459 M 231 693 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221337 222029 459 + . gene_id 11 ; sequence AmOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221337 222029 . + . KQ414889.1 exonerate:protein2genome:local exon 221337 222029 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221337 222029 459 + . alignment_id 11 ; Query AmOr26 ; Align 221337 8 693 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 451 Query range: 13 -> 405 Target range: 303172 -> 305816 14 : ValSerTyrAlaArgAspTyrGluTyrSerIleGlnValAsnArgTrpLeuLeuLysP : 33 :!!!:!||| !!:!||| !! ||| !! !:!! !!:!!:!|||:!!|||||| LeuAsnTyrLysLysAspIleValTyrValThrLysHisSerLysTrpIleLeuLysS 303173 : TTGAATTACAAGAAAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCCTGAAGT : 303230 34 : roIleGlyAlaTrpProAsnLeuThrLysAlaThrArgThrGluLysLeuLeuValLy : 52 !!:!!||| !|||||| !:!! ! !..!|||! ! !!!!||| !|| erLeuGlyIleTrpProAlaVal------LeuAspGluThrAlaGlyPheLeuProLy 303231 : CCCTTGGTATTTGGCCAGCCGTG------TTGGACGAAACCGCAGGATTCCTACCAAA : 303281 53 : sLeuLeuAsnPheIleCysHisSerLeuIleIlePheThrValMetProCysIleMet : 71 |:!! !! ! :!! !!:!!! !:!!:!!:!!|||||||||!!:|||||||||:!: sIleThrIleGlyLeuSerAsnLeuValLeuLeuPheThrValIleProCysIleLeu 303282 : AATCACCATTGGACTCAGTAATTTGGTTCTATTATTCACCGTGATACCGTGTATTCTA : 303338 72 : TyrIlePheTyrGluAspGluSerLeuLysThrArgMetLysAlaIleGlyProThrS : 91 :!!|||.!.!:!|||.!.:!!..! !! !! !|||:!!||| !.!!|||! ! !| HisIleIlePheGluGlnLysAspThrIleIleArgLeuLysLeuPheGlyLeuLeuS 303339 : CACATAATATTCGAACAAAAGGATACGATAATAAGATTGAAACTATTCGGTCTGCTGA : 303398 92 : erHisTrpLeuMetGlyGlu{Le} >>>> Target Intron 1 >>>> {u}As : 99 || !!! |||!!:..! !{:!} 938 bp {!}.! erPheCysLeuIleSerLeu{Il}+- -+{e}Gl 303399 : GTTTCTGTTTGATCTCGTTG{AT}ga.........................cg{A}CA : 304360 100 : nTyrCysCysLeuLeuMetArgAlaLysGluIleValTyrCysIleGluHisIleLys : 118 .|||! ! ||| ::: |||...:::|||!:! ! !! ! !!:!!... nTyrSerIleLeuProCysLysLeuLysArgLeuValPheArg***GlyAspLeuSer 304361 : ATATTCTATACTTccttgcaaattaaaacgtttaGTGTTTCGATAAGGGGATCTCTCT : 304417 119 : TyrAspTrpLysThrValArgArgAlaArgAspArgGluLeuMetIleLysAsnAlaL : 138 !! !:::!! !|||..! ! !||||||||||||:!!|||:!!||| !!!.!: ThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyG 304418 : ACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGC : 304477 139 : ysLeuGlyArgPheIleAlaCysIleAlaAlaLeuCysMetHisSerGlyIleMetSe : 157 !!:!!|||||| !:!:.!! |||..!|||:!!! !|||:!!!!!||| !! ! lnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIl 304478 : AAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCAT : 304534 158 : rTyrThrValIleThrGlyPheLysLysIleThrPheGlnIleGlyAsnAspSerTyr : 176 !||| !..!:!!! ! !||| !! !|||!:! :!:! !.!. !!!:! ! eTyrHisThrValMetGlnPheAlaThrGlyThrTyr---ValAspGluTyrAsnArg 304535 : TTATCACACGGTCATGCAGTTCGCGACCGGAACGTAT---GTGGATGAGTATAATCGT : 304588 177 : SerMetTyrArgLeuProCysProPheTyrThrAsnLeuLeuAspValArgPheSerP : 196 !!!!!: ! ! !||| !! !||| !|||!:! !|||!!!||||||!:! |||| ThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerP 304589 : ACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCC : 304648 197 : roMetAsnGluIleValPheAlaLeuGlnLeuLeuSerGlyPheIleSerThrSerVa : 215 ||!!: !!|||:!:|||!:! !:!!!!.! !:!!!!!|||!:!:!!! ! !|||:! roIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIl 304649 : CTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTAT : 304705 216 : lThrValGlyAlaCysGlyLeuAlaAlaValLeuAlaMetHisAlaCysGlyGlnPhe : 234 !|||!.!|||||||||||||||||||||:!!!!!|||! |||||||||||||||.!! eThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIle 304706 : AACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATT : 304762 235 : AsnValValMetIleArgSerAspLysLeuValLysAspAsnAsnGluLysLysGlnA : 254 :!!:!!|||||| !|||! !! ! ! |||||| |||!:!:!!:!!..!...| AspIleValMetSerArgLeuGlyAspLeuVal------AsnSerLysGluSerSerA 304763 : GATATCGTTATGTCTCGATTGGGTGATCTTGTC------AACAGCAAAGAATCATCTG : 304816 255 : spGluGlnThrLeuHisLysLysLeuGlyPheIleValGluHisHisLeuArgThrLe : 273 || ||| !!|||::!||| ! |||||||||||||||||||||! !|| sp---------LeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIleLe 304817 : AT---------TTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTT : 304864 274 : u{Se} >>>> Target Intron 2 >>>> {r}LeuValTrpTyrMetGluLys : 281 |{||} 138 bp {|} !:!!! ! ! ! u{Se}++ +-{r}AspMetSerThr***IleLeu 304865 : A{AG}gt.........................ac{T}GATATGTCTACTTGAATACTA : 305026 282 : ValMetAsnMetIleCysLeuValGluLeuValGlyCysThrMetAsnMetCysIleL : 301 :!! ||| |||!!!:!! !!!! ! !!! ||| !.!..!.! :::| LeuTyrAsnGlyAlaCysPheIleThrPheAsp***TrpThr***GluPheLeuValL 305027 : CTGTATAACGGTGCGTGTTTTATAACTTTTGACTAATGGACTTAGGAGTTCTTGgttt : 305086 302 : euLysTyrTyrPheLeuThrGluLysSerLysThrIle<->LeuGlyIleTyrAlaIl : 319 || ! !|||!..|||!!.|||:!! ||| !! !|||.!!:! euTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrVa 305087 : tatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGT : 305143 320 : eValTyrAlaSerMetValPheAsnIlePheIlePheCysTyrIleAlaGluIleVal : 338 ::!! !|||:!:..!|||||||||||||||!!.|||||||||!.!||||||:!! lLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeu 305144 : GTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTT : 305200 339 : ThrGluGln >>>> Target Intron 3 >>>> GlyLysLysValGlyGluLy : 348 ! !|||:!! 413 bp .!!!..!..|||||| !.. MetGluLys++ ++SerSerSerValGlyLeuSe 305201 : ATGGAAAAGgt.........................agAGCAGTAGCGTTGGATTATC : 305643 349 : sPheTyrMetThrGluTrpTyrGlnLeuProHisLysThrAlaLeuGlyLeuValLeu : 367 .! !!:!|||! !...||||||!!.|||||| !|||||| !! !||||||:!!||| rCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleLeu 305644 : CTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTTTA : 305700 368 : IleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysLeuIleGlnIleS : 387 ||||||:!!! !||||||! ! !||||||!:!|||||||||:!!:!!.!.:!!| IleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysValValAspLeuS 305701 : ATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTAT : 305760 388 : erIleAlaThrPheAlaAlaValPheLysAlaSerPheAlaTyrLeuAsnMetIle : 405 ||:!!:!!||||||!.! !||| ! ! !...:::::: :::::::::::: erLeuSerThrPheGlyAsnValSerTyrTyrGlnTyrSerAsnIleSerIleVal 305761 : CTTTATCCACATTTGGAAACGTGAGTTACTATcaatattccaatatttcaattgtt : 305816 vulgar: AmOr26 13 405 . KQ414889.1 303172 305816 + 451 M 27 81 G 2 0 M 55 165 S 0 2 5 0 2 I 0 934 3 0 2 S 1 1 M 71 213 G 1 0 M 75 225 G 2 0 M 7 21 G 3 0 M 16 48 S 0 2 5 0 2 I 0 134 3 0 2 S 1 1 M 39 117 G 0 3 M 28 84 5 0 2 I 0 409 3 0 2 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303173 305816 451 + . gene_id 12 ; sequence AmOr26 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303173 303420 . + . KQ414889.1 exonerate:protein2genome:local exon 303173 303420 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 303421 303422 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 303421 304358 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304357 304358 . + . intron_id 0 ; splice_site "CG" KQ414889.1 exonerate:protein2genome:local cds 304359 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304359 304868 . + . insertions 0 ; deletions 6 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 305006 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 305005 305006 . + . intron_id 1 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 305007 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305007 305211 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305816 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305816 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303173 305816 451 + . alignment_id 12 ; Query AmOr26 ; Align 303173 14 81 ; Align 303254 43 165 ; Align 304360 99 213 ; Align 304573 171 225 ; Align 304798 248 21 ; Align 304819 258 48 ; Align 305008 275 117 ; Align 305128 314 84 ; Align 305625 342 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 446 Query range: 0 -> 285 Target range: 236789 -> 237632 1 : MetMetAsnGlnLeuAsnGluGlnSerValLeuMetProValSerTyrAlaArgAspT : 20 :!!:!:!....! !|||!!::!!!!!|||:!!! !:!!!:! .!! !..! ValValThrMetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerS 236790 : GTGGTCACGATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCA : 236847 21 : yrGluTyrSerIleGlnValAsnArgTrpLeuLeuLysProIleGlyAlaTrpProAs : 39 !!!:||||||:!!||| !||||||||| !:!!||| !||||||.!!||||||.! erAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGl 236848 : GCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACA : 236904 40 : nLeuThrLysAlaThrArgThrGluLysLeuLeuValLysLeuLeuAsnPheIleCys : 58 .!!! :!!:!!!.! !|||!:! !:!! !::!:!!|||||| ! |||||| nPhe------SerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCys 236905 : GTTC------TCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGC : 236955 59 : HisSerLeuIleIlePheThrValMetProCysIleMetTyrIlePheTyrGluAspG : 78 :!!!!! !|||:!!|||:!!:!!!!:|||||| :!!:!!:!!.!. ||| ! ! TyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysG 236956 : TACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAG : 237015 79 : luSerLeuLysThrArgMetLysAlaIleGlyProThrSerHisTrpLeuMetGlyGl : 97 !!!!!!! ! |||!:!:!!||| !:!!||| !! !|||||||||:!!.!. !! lyThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIl 237016 : GGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTAT : 237072 98 : uLeuAsnTyrCysCysLeuLeuMetArgAlaLysGluIleValTyrCysIleGluHis : 116 :!!!:!||| ! ||||||:!!||| !||| ||| !:!!! !.!!.!.||| eIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHis 237073 : CATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCAT : 237129 117 : IleLysTyrAspTrpLysThrValArgArgAlaArgAspArgGluLeuMetIleLysA : 136 !!::!! !||||||!:!|||..! ||| ... :::|||:::|||:!:||| MetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysT 237130 : ATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGT : 237189 137 : snAlaLysLeuGlyArgPheIleAlaCysIleAlaAlaLeuCysMetHisSerGlyIl : 155 !!||||||!!!.!!|||!:! ||| ! !..!.!!:!!! !!!:|||.!!||||| yrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIl 237190 : ACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTAT : 237246 156 : eMetSerTyrThrValIleThrGlyPheLysLysIleThrPheGlnIleGlyAsnAsp : 174 |:!:.!!||| !|||!!:|||!.!! !! ! !!!:..! !! !:!!|||||| ! eLeuGlyTyrCysValMetThrAlaSerThrThrMetValValValValGlyAsnLys 237247 : ACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAG : 237303 175 : SerTyrSerMetTyrArgLeuProCysProPheTyrThrAsnLeuLeuAspValArgP : 194 !!! ! !:!! ! !||||||! |||.!.|||! !...|||||| ||| ! ThrThrIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspT 237304 : ACTACGATCTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATA : 237363 195 : heSerProMetAsnGluIleValPheAlaLeuGlnLeuLeuSerGlyPheIleSerTh : 213 !:! !!||||||!!:|||||| !! !! !|||!!!|||||||||||||||:!!!. hrAsnThrMetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAs 237364 : CGAATACTATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAA : 237420 214 : rSerValThrValGlyAlaCysGlyLeuAlaAlaValLeuAlaMetHisAlaCysGly : 232 !!:! !.!!:!!.!!!.! .!!|||.!!::!!.!|||.!! ||||||! !||| nAsnSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGly 237421 : CAACAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGC : 237477 233 : GlnPheAsnValValMetIleArgSerAspLysLeuValLysAspAsnAsnGluLysL : 252 |||!!.!:!|||||||||:!: !! !!!: ! !!!|||!..!!: !.....!:! GlnLeuSerValValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgG 237478 : CAGTTGAGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAG : 237537 253 : ysGlnAspGluGlnThrLeuHisLysLysLeuGlyPheIleValGluHisHisLeuAr : 271 !:!!|||!!:!!. ! ! :!!:!! ! |||||||||.!.|||||||| lyLysAspAspHis------PheAspGluIleProThrIleValGluGluHisLeuAr 237538 : GGAAGGACGATCAT------TTCGACGAAATACCGACAATCGTGGAGGAACATTTGAG : 237588 272 : gThrLeuSerLeuValTrpTyrMetGluLysValMetAsnMet : 285 |..!|||!.!! !|||!! ! :!!!!: !:!!:!! ||| gValLeuLys***ValCysLeuLeuAspLeuIleLeuLeuMet 237589 : AGTGTTGAAGTAAGTATGTTTGTTGGATTTGATTTTGCTGATG : 237632 vulgar: AmOr26 0 285 . KQ414889.1 236789 237632 + 446 M 40 120 G 2 0 M 214 642 G 2 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236790 237632 446 + . gene_id 13 ; sequence AmOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236790 237632 . + . KQ414889.1 exonerate:protein2genome:local exon 236790 237632 . + . insertions 0 ; deletions 4 KQ414889.1 exonerate:protein2genome:local similarity 236790 237632 446 + . alignment_id 13 ; Query AmOr26 ; Align 236790 1 120 ; Align 236910 43 642 ; Align 237552 259 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 416 Query range: 5 -> 276 Target range: 226882 -> 227686 6 : AsnGluGlnSerValLeuMetProValSerTyrAlaArgAspTyrGluTyrSerIleG : 25 ||| !|||:!! !! ! !..!||| !..! !!! .!. ||||||| AsnLeuAlaSerLeuAlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleG 226883 : AACCTCGCGTCTCTCGCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATAC : 226940 26 : lnValAsnArgTrpLeuLeuLysProIleGlyAlaTrpProAsnLeuThrLysAlaTh : 44 ||:!!|||||||||||||||||||||:!!||| !||||||:::! ! !|||::!:! lnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgLysSerSe 226941 : AGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTC : 226997 45 : rArgThrGluLysLeuLeuValLysLeuLeuAsnPheIleCysHisSerLeuIleIle : 63 !|||! !! !!:!! !!!! ! !|||:!!..!|||:!!|||:!!:!!|||!!:! ! rArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSer 226998 : TCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGC : 227054 64 : PheThrValMetProCysIleMetTyrIlePheTyrGluAspGluSerLeuLysThrA : 83 ||| !:!!:!: !! !! !:!!|||:!: !! |||! :!!.!! ! ! !.!! PheGluLeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnT 227055 : TTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACA : 227114 84 : rgMetLysAlaIleGlyProThrSerHisTrpLeuMetGlyGluLeuAsnTyrCysCy : 102 !:!!||| !|||||||||! !||| !!:: !|||..! |||!!.|||! ! hrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMe 227115 : CGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCAT : 227171 103 : sLeuLeuMetArgAlaLysGluIleValTyrCysIleGluHisIleLysTyrAspTrp : 121 ||| !.!.!.!! ! ! !!:|||:!! ! |||:!!|||!..||||||!::|||||| tLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrp 227172 : GTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGG : 227228 122 : LysThrValArgArgAlaArgAspArgGluLeuMetIleLysAsnAlaLysLeuGlyA : 141 |||!.!:!!||| ! !..!||||||.!.:!!|||:!:! ! !!||| ! ! !|||| LysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyA 227229 : AAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAA : 227288 142 : rgPheIleAlaCysIleAlaAlaLeuCysMetHisSerGlyIleMetSerTyrThrVa : 160 || :!: ! !|||..!.!!!!!! !:!: !|||......::: ::: :! rgLysLeuIleThrIleCysThrPhePheValPheSerSerPheValPhePheTyrIl 227289 : GAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacAT : 227345 161 : lIleThrGlyPheLysLysIleThrPheGlnIleGlyAsnAspSerTyrSerMetTyr : 179 !:!!..! !.!!!!. !!:! !! !! ! !:!!! !:!:!!||| ! eValValProIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIle 227346 : CGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATT : 227402 180 : ArgLeuProCysProPheTyrThrAsnLeuLeuAspValArgPheSerProMetAsnG : 199 !:!:!!|||! !|||||| ! !! !:!! !|||||||||!:!||||||.!.|||| GlnMetProPheProPheProLysIleIleAlaAspValArgTyrSerProPheAsnG 227403 : CAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACG : 227462 200 : luIleValPheAlaLeuGlnLeuLeuSerGlyPheIleSerThrSerValThrValGl : 218 ||||| !!|||:!!:!!|||!!!:!!!!!|||.!!:!:! ! !.!!|||||| !!. luIlePhePheSerValGlnPheValThrGlyIleValLeuHisGlyValThrSerAl 227463 : AGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGC : 227519 219 : yAlaCysGlyLeuAlaAlaValLeuAlaMetHisAlaCysGlyGlnPheAsnValVal : 237 !||||||.!!:!!||||||:!!||||||:!:|||||||||||||||.!..!.|||:!! aAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeu 227520 : TGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTG : 227576 238 : MetIleArgSerAspLysLeuValLysAspAsnAsnGluLysLysGlnAspGluGlnT : 257 :!! ! !! !! ! |||:!! :!!! !:! !.!. ...:!!| ValSerTrpLeuGlyHisLeuIle---------AspGlyArgAlaAspMetSerLysT 227577 : GTGTCCTGGCTGGGACATTTGATC---------GACGGCAGAGCGGATATGAGCAAAA : 227627 258 : hrLeuHisLysLysLeuGlyPheIleValGluHisHisLeuArgThrLeuSerLeuVa : 276 ||||| !! ! !:!:!!!.! !|||||| ||||||:!!|||! !|||!.!! !|| hrLeuAspAspArgIleAlaSerIleValThrHisHisValArgIleLeuLysCysVa 227628 : CACTGGATGATAGAATCGCTAGCATCGTCACTCACCACGTTCGAATATTGAAGTGTGT : 227684 277 : l : 276 | l 227685 : A : 227686 vulgar: AmOr26 5 276 . KQ414889.1 226882 227686 + 416 M 240 720 G 3 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226883 227686 416 + . gene_id 14 ; sequence AmOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226883 227686 . + . KQ414889.1 exonerate:protein2genome:local exon 226883 227686 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 226883 227686 416 + . alignment_id 14 ; Query AmOr26 ; Align 226883 6 720 ; Align 227603 249 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 409 Query range: 5 -> 254 Target range: 212824 -> 213571 6 : AsnGluGlnSerValLeuMetProValSerTyrAlaArgAspTyrGluTyrSerIleG : 25 :!!|||:!!! ! !:!! ! !!!!|||! !!:! ... |||||| AspGluLysLeuGlnValGluAspCysThrTyrGluLysArgValAsnLeuSerIleP 212825 : GATGAGAAATTGCAGGTCGAAGACTGTACCTACGAGAAACGtgtaaatttaagtatac : 212882 26 : lnValAsnArgTrpLeuLeuLysProIleGlyAlaTrpProAsnLeuThrLysAlaTh : 44 ! !|||||||||||||||||||||! ||| !||||||:!! !:!! ! !.!:! roTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspLysSerTyrValSe 212883 : CGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCTACGTTTC : 212939 45 : rArgThrGluLysLeuLeuValLysLeuLeuAsnPheIleCysHisSerLeuIleIle : 63 !! !! !|||||| !:!!!.!::!|||:!!||| !:!!|||:!!.!!|||||| ! rProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLeuIleGly 212940 : ACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGT : 212996 64 : PheThrValMetProCysIleMetTyrIlePheTyrGluAspGluSerLeuLysThrA : 83 !:! !|||!!:||||||! !:!!|||:!:||| !!!:! |||:::::: . TyrLeuValIleProCysSerLeuTyrValPheLeuAspValGluAsnIlePheLysG 212997 : TACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaag : 213056 84 : rgMetLysAlaIleGlyProThrSerHisTrpLeuMetGlyGluLeuAsnTyrCysCy : 102 ..:!::!! !.!!||| ! !:!! !!! :!! !.! !! !!!.||| !! luIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSe 213057 : agaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTC : 213113 103 : sLeuLeuMetArgAlaLysGluIleValTyrCysIleGluHisIleLysTyrAspTrp : 121 |||:!!:!:!.!!.! ! !!:||| ! |||:!!||||||!!:|||||||||||| rLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMetLysTyrAspTrp 213114 : GTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGG : 213170 122 : LysThrValArgArgAlaArgAspArgGluLeuMetIleLysAsnAlaLysLeuGlyA : 141 |||!.!:!!! !!.!! !..!|||!:!|||:!!||| !||||||!..!!!|||! LysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyL 213171 : AAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAA : 213230 142 : rgPheIleAlaCysIleAlaAlaLeuCysMetHisSerGlyIleMetSerTyrThrVa : 160 :! |||!.! |||..!|||!!!! !|||:!!!!!|||.!!! !! !||| !:! ysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLe 213231 : AGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCT : 213287 161 : lIleThrGlyPheLysLysIleThrPheGlnIleGlyAsnAspSerTyrSerMetTyr : 179 !:!!..! !.!!!.. ! !! !.!. ! ! !:!! !!:! !!!.!. uValValProIleSerAlaAspLysMetValAlaGluAspLeuAsnValThrPheArg 213288 : CGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGA : 213344 180 : ArgLeuProCysProPheTyrThrAsnLeuLeuAspValArgPheSerProMetAsnG : 199 !:!:!! ! !||| !!! ! ! !:!!:!!|||||||||!:!||||||:!!|||| GlnMetValValProValSerArgPheIleValAspValArgTyrSerProValAsnG 213345 : CAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACG : 213404 200 : luIleValPheAlaLeuGlnLeuLeuSerGlyPheIleSerThrSerValThrValGl : 218 ||||| !!||| !:!!|||:!!:!!:!!||| ! :!:! ! !:!!:!!.!!|||! luIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValVa 213405 : AGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGT : 213461 219 : yAlaCysGlyLeuAlaAlaValLeuAlaMetHisAlaCysGlyGlnPheAsnValVal : 237 !||||||.!!||||||||||||!!!|||:!:|||||||||||||||.!...!:!!:!! lAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeu 213462 : AGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTG : 213518 238 : MetIleArgSerAspLysLeuValLysAspAsnAsnGluLysLysGlnAsp : 254 |||! ! !! !!!: ! |||:!! ! ! !!...!.!!:! !!..:!!:!! MetSerTrpLeuGluHisLeuIleAspGlyArgGluAspMetSerLysAsn 213519 : ATGAGCTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGCAAGAAT : 213571 vulgar: AmOr26 5 254 . KQ414889.1 212824 213571 + 409 M 249 747 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212825 213571 409 + . gene_id 15 ; sequence AmOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212825 213571 . + . KQ414889.1 exonerate:protein2genome:local exon 212825 213571 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212825 213571 409 + . alignment_id 15 ; Query AmOr26 ; Align 212825 6 747 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 298 Query range: 15 -> 246 Target range: 289717 -> 290407 16 : TyrAlaArgAspTyrGluTyrSerIleGlnValAsnArgTrpLeuLeuLysProIleG : 35 |||! !! !||| ...|||!!!.!!:!!:!! !!.!|||:!!||||||||||||| TyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleLeuLysProIleG 289718 : TACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAG : 289775 36 : lyAlaTrpProAsnLeu<->ThrLysAlaThrArgThrGluLysLeuLeuValLysLe : 53 || !!::||| !:!! !:!:::|||!:!||| !|||::! ! ! ! !|| lyMetTyrProPheValPheSerArgAlaSerArgArgGluArgThrAlaSerValLe 289776 : GCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTT : 289832 54 : uLeuAsnPheIleCysHisSerLeuIleIlePheThrValMetProCysIleMetTyr : 72 ||||! !.!.:!!||| !|||:!!:!! |||! !:!!:!:|||! !! ! :!! uLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValProPheSerHisHis 289833 : GCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCAC : 289889 73 : IlePheTyrGluAspGluSerLeuLysThrArgMetLysAlaIleGlyProThrSerH : 92 :!!.!.!:!...|||.!...!:!!!!.||| !:!:||| !:!!|||||| !!!! ValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuGlyProLeuThrP 289890 : GTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGT : 289949 93 : isTrpLeuMetGlyGluLeuAsnTyrCysCysLeuLeuMetArgAlaLysGluIleVa : 111 !!! |||! ! !!!!!.||||||! !!!! !|||!:!!.!..!! !|||! heCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGlySerAlaIleGl 289950 : TCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGG : 290006 112 : lTyrCysIleGluHisIleLysTyrAspTrpLysThrValArgArgAlaArgAspArg : 130 ! !|||:!::!!||||||:!! |||||||||! !:!!||| !! ! ! !!||| yArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAspGluAspHisArg 290007 : TCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGT : 290063 131 : GluLeuMetIleLysAsnAlaLysLeuGlyArgPheIleAlaCysIleAlaAlaLeuC : 150 ! :!!|||:!!!:! !!!.!! !:!!.!!||| !:!! ! :!:..!|||:!!! ValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysLeuCysAlaIleP 290064 : GTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCT : 290123 151 : ysMetHisSerGlyIleMetSerTyrThrValIleThrGlyPheLysLysIleThrPh : 169 !:!!:!!! !||| !:!!||||||!.!..!:!! .!. ! !.!!:!! heLeuTyrIleGlyGlyLeuSerTyrAsnThrVal------IleProLeuPheSerLy 290124 : TCTTGTACATAGGTGGTCTGTCTTATAACACTGTC------ATACCGTTGTTCTCGAA : 290174 170 : eGlnIleGlyAsnAspSerTyrSerMetTyrArgLeuProCysProPheTyrThrAsn : 188 :!!! !! !|||! !!:! !!!!!: ! !||| !!! !||| !||| !.!. sLysSerValAsnGlyAsnValThrIleArgProLeuThrTyrProGlyTyrGluGlu 290175 : GAAGAGCGTGAACGGTAACGTGACTATCAGACCTCTAACTTATCCCGGTTACGAGGAG : 290231 189 : LeuLeuAspValArgPheSerProMetAsnGluIleValPheAlaLeuGlnLeuLeuS : 208 !!!!!!||||||!:! |||||| ! !!||||||||||||..!:!!!!.! !:!!! PhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetHisCysValT 290232 : TTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCT : 290291 209 : erGlyPheIleSerThrSerValThrValGlyAlaCysGlyLeuAlaAlaValLeuAl : 227 !! !.!.|||!!!.!!!:!:!!|||:!!!.!|||! !.!!|||.!!.!!:!!!!!|| yrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePheAl 290292 : ACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGC : 290348 228 : aMetHisAlaCysGlyGlnPheAsnValValMetIleArgSerAspLysLeuValLys : 246 |! |||.!!|||||||||.!!!!.:!! !! !! ||| !!!: ! |||..!||| aThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAspLeuThrLys 290349 : CACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTGACAAAG : 290405 vulgar: AmOr26 15 246 . KQ414889.1 289717 290407 + 298 M 25 75 G 0 3 M 121 363 G 2 0 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289718 290407 298 + . gene_id 16 ; sequence AmOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289718 290407 . + . KQ414889.1 exonerate:protein2genome:local exon 289718 290407 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289718 290407 298 + . alignment_id 16 ; Query AmOr26 ; Align 289718 16 75 ; Align 289796 41 363 ; Align 290159 164 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 260 Query range: 316 -> 406 Target range: 277407 -> 277833 317 : TyrAlaIleValTyrAlaSerMetValPheAsnIlePheIlePheCysTyrIleAlaG : 336 :!! !!!::!! ! !|||||| |||||||||||| ! ! |||||||||!.!| HisPheMetIleLeuIleSerMetCysPheAsnIlePheThrValCysTyrIleGlyG 277408 : CATTTCATGATCCTTATATCCATgtgtttcaacatttttacAGTATGCTATATCGGAG : 277465 337 : luIleValThrGluGln >>>> Target Intron 1 >>>> GlyLysLysVal : 345 |||||:!!||||||||| 72 bp !!||||||||| luIleLeuThrGluGln++ ++CysLysLysVal 277466 : AAATACTAACTGAACAGgt.........................agTGTAAAAAAGTT : 277564 346 : GlyGluLysPheTyrMetThrGluTrpTyrGlnLeuProHisLysThrAlaLeuGlyL : 365 |||||| ! !!|||||||||.!.|||||| ! |||||| !!||| ! !|||..!| GlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAspLysAspIleLeuAsnL 277565 : GGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCGACAAAGATATTCTCAATT : 277624 366 : euValLeuIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysLeuIl : 384 ||:!!|||||||||||||||||||||:::||||||||||||||||||||||||||||| euLeuLeuIleIleSerArgSerSerLeuValIleLysIleThrAlaGlyLysLeuIl 277625 : TGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaattaccgctggaaaattaat : 277681 385 : eGlnIleSerIleAlaThrPheAlaAla >>>> Target Intron 2 >>>> V : 394 ||||:::|||:!: !||||||!.!! ! 84 bp | eGlnMetSerValTyrThrPheGlyAsp++ ++V 277682 : tcaaatgtCCGTGTACACGTTCGGCGATgt.........................agG : 277795 395 : alPheLysAlaSerPheAlaTyrLeuAsnMetIleArg : 406 ||.!.|||.!!!!!|||||||||||||||::::::||| alIleLysThrThrPheAlaTyrLeuAsnIleLeuArg 277796 : TAATAAAAACCACTTTCgcgtatttaaatattctacgC : 277833 vulgar: AmOr26 316 406 . KQ414889.1 277407 277833 + 260 M 25 75 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277408 277833 260 + . gene_id 17 ; sequence AmOr26 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277408 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277408 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277833 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277833 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277408 277833 260 + . alignment_id 17 ; Query AmOr26 ; Align 277408 317 75 ; Align 277555 342 156 ; Align 277795 394 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 250 Query range: 313 -> 409 Target range: 258291 -> 258738 314 : LeuGlyIleTyrAlaIleValTyrAlaSerMetValPheAsnIlePheIlePheCysT : 333 |||... ||| !!!::!! ! !|||::: ||||||||||||:::...|||| LeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValIleCysT 258292 : ttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaatatgtt : 258349 334 : yrIleAlaGluIleValThrGluGln >>>> Target Intron 1 >>>> Gly : 342 |||||!.!||||||:!!||||||||| 90 bp !! yrIleGlyGluIleLeuThrGluGln++ ++Cys 258350 : ACATAGGTGAAATATTAACAGAACAGgt.........................agTGC : 258466 343 : LysLysValGlyGluLysPheTyrMetThrGluTrpTyrGlnLeuProHisLysThrA : 362 ||||||||||||!!: ! !!|||||||||!!:|||||| ! |||||| !!|||! ! LysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspLysArgI 258467 : AAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAA : 258526 363 : laLeuGlyLeuValLeuIleIleSerArgSerSerMetValIleLysIleThrAlaGl : 381 !|||! !|||:!!|||:!!|||:!!|||||||||:!!|||:!!:!!||||||||||| leLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleThrAlaGl 258527 : TACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGgg : 258583 382 : yLysLeuIleGlnIleSerIleAlaThrPheAlaAla >>>> Target Intron : 394 ||||.........:::|||||| !||||||::!! ! 69 bp yLysPhePheHisMetSerIleTyrThrPheSerAsp++ 258584 : aaaattctttcacatGTCCATTTACACATTCAGCGATgt................... : 258624 395 : 2 >>>> ValPheLysAlaSerPheAlaTyrLeuAsnMetIleArgThrIleAla : 409 |||.!.|||.!!||||||||||||||||||:!::!:||| !:!!:!! ++ValIleLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnValSer 258625 : ......agGTAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGTATCG : 258738 vulgar: AmOr26 313 409 . KQ414889.1 258291 258738 + 250 M 28 84 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258292 258738 250 + . gene_id 18 ; sequence AmOr26 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 258292 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258292 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258292 258738 250 + . alignment_id 18 ; Query AmOr26 ; Align 258292 314 84 ; Align 258466 342 156 ; Align 258691 394 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 236 Query range: 0 -> 244 Target range: 194108 -> 194831 1 : MetMetAsnGlnLeuAsnGluGlnSerValLeuMetProValSerTyrAlaArgAspT : 20 |||:!:...:::::: ::::::||| !! ! !|||!:!||| ! !||| MetValGluGluIleAlaLysLysSerAsnTyrArgAsnValAsnTyrLysLeuAspT 194109 : ATGGTCgaagaaatcgcgaagaaatcgAATTACCGCAACGTCAATTACAAATTGGACA : 194166 21 : yrGluTyrSerIleGlnValAsnArgTrpLeuLeuLysProIleGlyAlaTrpProAs : 39 !||||||:!!:!!!:!||| !:! !||||||! !||||||||| !||||||!. hrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProAr 194167 : CCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAAG : 194223 40 : nLeuThrLysAlaThrArgThrGluLysLeuLeuValLysLeuLeuAsnPheIleCys : 58 . ! !... ! ! !! !! ::!|||!!!!.!:!! !.! !:!: ! gGluAspSerLeuArgAspArgValArgLeuPheAlaGln------ThrGlyValVal 194224 : GGAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAA------ACTGGCGTGGTC : 194274 59 : HisSerLeuIleIlePheThrValMetProCysIleMetTyrIlePheTyrGluAspG : 78 !:!!|||!!: !||| !:!!:!:||| !:!:!!:|||! !!:!!:!!!: !| PheAlaLeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCysG 194275 : TTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGCG : 194334 79 : luSerLeuLysThrArgMetLysAlaIleGlyProThrSerHisTrpLeuMetGlyGl : 97 ||..!|||! !! ! !||||||!.!|||!.! !! ! ! ! ! |||:!!!.! luAspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaIl 194335 : AGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGAT : 194391 98 : uLeuAsnTyrCysCysLeuLeuMetArgAlaLysGluIleValTyrCysIleGluHis : 116 :!!!!.!:!!! :!!:!!:!!!.! !||||||||| !!:!|||:!: !.!. eIleLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGlu 194392 : CATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAG : 194448 117 : IleLysTyrAspTrpLysThrValArgArgAlaArgAspArgGluLeuMetIleLysA : 136 !!::!! .!.!::!:! !|||..! !!! !..!||||||:!!:!!|||! !!. MetGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsnC 194449 : ATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATT : 194508 137 : snAlaLysLeuGlyArgPheIleAlaCysIleAlaAlaLeuCysMetHisSerGlyIl : 155 !||||||:!!|||||||||.!!.!! !:!: ! ! ! ! :!!.!!||| ysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAl 194509 : GCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGC : 194565 156 : eMetSerTyrThrValIleThrGlyPheLysLysIleThrPheGlnIleGlyAsnAsp : 174 !:!! !!||| !:!!||| ! !.!.! !..! ! !.!! :!! !.!.||| aLeuProTyrHisIleIleLeuProLeuMetSerGluArgIle---ValLysGluAsp 194566 : TTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATT---GTCAAGGAGGAT : 194619 175 : SerTyrSerMetTyrArgLeuProCysProPheTyrThrAsnLeuLeuAspValArgP : 194 !:! !!!!..! ! !||||||! ! ! ! !! ! !!!!!!!! :!!..! AsnSerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluA 194620 : AACAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAG : 194679 195 : heSerProMetAsnGluIleValPheAlaLeuGlnLeuLeuSerGlyPheIleSerTh : 213 !||||||!!: !!||||||..!|||!.!! !|||:!!|||! !.!! !|||! ! spSerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLe 194680 : ACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATT : 194736 214 : rSerValThrValGlyAlaCysGlyLeuAlaAlaValLeuAlaMetHisAlaCysGly : 232 !|||..!!.! !||| !! !.!!|||!.!|||..!:!! !||||||..!|||||| uSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGly 194737 : GTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGC : 194793 233 : GlnPheAsnValValMetIleArgSerAspLysLeu : 244 !|||.!.|||..!! ! !|||! !!!:! :!! LeuPheGluValThrSerArgArgMetGluThrIle 194794 : TTGTTCGAAGTGACCAGCAGAAGGATGGAGACTATT : 194831 vulgar: AmOr26 0 244 . KQ414889.1 194108 194831 + 236 M 52 156 G 2 0 M 115 345 G 1 0 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194109 194831 236 + . gene_id 19 ; sequence AmOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194109 194831 . + . KQ414889.1 exonerate:protein2genome:local exon 194109 194831 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 194109 194831 236 + . alignment_id 19 ; Query AmOr26 ; Align 194109 1 156 ; Align 194265 55 345 ; Align 194610 171 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 230 Query range: 17 -> 201 Target range: 294675 -> 295227 18 : ArgAspTyrGluTyrSerIleGlnValAsnArgTrpLeuLeuLysProIleGlyAlaT : 37 !.!||| ! ! !!|||:!!:!! ! !||| !!|||||||||||||||||| !| AsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuT 294676 : AACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTT : 294733 38 : rpProAsnLeu<->ThrLysAlaThrArgThrGluLysLeuLeuValLysLeuLeuAs : 55 ||||| !:!! !:! ! .!!!:!!:! !.!.|||:!!||| !! !:!!|||! rpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIl 294734 : GGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGAT : 294790 56 : nPheIleCysHisSerLeuIleIlePheThrValMetProCysIleMetTyrIlePhe : 74 ! ||| ! ! !:!!:!:|||..!:!!:!!|||||| ! !:! ! ! eAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCysVal 294791 : CGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTA : 294847 75 : TyrGluAspGluSerLeuLysThrArgMetLysAlaIleGlyProThrSerHisTrpL : 94 !:!.!.! :::::::::||| ::!|||||| !:!:||||||..! !:!!! : PheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerM 294848 : TTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTA : 294907 95 : euMetGlyGluLeuAsnTyrCysCysLeuLeuMetArgAlaLysGluIleValTyrCy : 113 !!:!:..! !|||!..||| !!||||||:!!:!!!:!.!! ! !.!! !:!!|| etLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCy 294908 : TGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTG : 294964 114 : sIleGluHisIleLysTyrAspTrpLysThrValArgArgAlaArgAspArgGluLeu : 132 ||||||| !!|||:!! !!||||||||| !:!! !!.! !!..! !!|||! !:!! sIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIle 294965 : CATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATC : 295021 133 : MetIleLysAsnAlaLysLeuGlyArgPheIleAlaCysIleAlaAlaLeuCysMetH : 152 |||||||||||||||! !:!! !!:! !!:.!! ! ! !.!!:!! !!:: MetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleIleT 295022 : ATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCT : 295081 153 : isSerGlyIleMetSerTyrThrValIleThrGlyPheLysLysIleThrPheGlnIl : 171 !!|||..! :!!|||||| !!.!|||... ||| ... ...!!.:!! yrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGlu-- 295082 : ACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGAG-- : 295138 172 : eGlyAsnAspSerTyrSerMetTyrArgLeuProCysProPheTyrThrAsnLeuLeu : 190 ..!!!. ! !:! !!!!!!!: ! !|||||| !||| !||| ! !!!:!! -AsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheVal 295139 : -AACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTA : 295192 191 : AspValArgPheSerProMetAsnGluIleVal : 201 |||!.! !! !||||||! !!||||||:!! AspAlaTyrSerSerProThrTyrGluIleIle 295193 : GACGCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: AmOr26 17 201 . KQ414889.1 294675 295227 + 230 M 23 69 G 0 3 M 130 390 G 1 0 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294676 295227 230 + . gene_id 20 ; sequence AmOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294676 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294676 295227 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294676 295227 230 + . alignment_id 20 ; Query AmOr26 ; Align 294676 18 69 ; Align 294748 41 390 ; Align 295138 172 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 188 Query range: 316 -> 394 Target range: 219364 -> 219671 317 : TyrAlaIleValTyrAlaSerMetValPheAsnIlePheIlePheCysTyrIleAlaG : 336 ||| !|||:!! ! !|||:!:...|||||||||||||||||||||||||||!.!| TyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyG 219365 : TACATCATTCTACTTATATCCCTcactttcaacattttcatattttgctaCATAGGAG : 219422 337 : luIleValThrGluGln >>>> Target Intron 1 >>>> GlyLysLysVal : 345 ||||||||.!!|||||| 73 bp ! :::|||::: luIleValAlaGluGln++ ++CysArgLysIle 219423 : AGATCGTTGCTGAACAggt.........................agTGtaggaaaatt : 219522 346 : GlyGluLysPheTyrMetThrGluTrpTyrGlnLeuProHisLysThrAlaLeuGlyL : 365 |||||| ||||||! !|||||||||!:!||| !! |||! ! !||| !! GlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysLysLeuTrpS 219523 : ggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGA : 219582 366 : euValLeuIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysLeuIl : 384 !||||||! !|||:!!! !|||!:! !||||||:!:|||||||||!!.:!!:! erValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetVa 219583 : GCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGGAAATATGGT : 219639 385 : eGlnIleSerIleAlaThrPheAlaAlaVal : 394 !:!!:!:||||||::!||||||.!!! !||| lGluLeuSerIleSerThrPheThrAspVal 219640 : CGAATTGTCTATCAGCACTTTTACCGACGTG : 219671 vulgar: AmOr26 316 394 . KQ414889.1 219364 219671 + 188 M 25 75 5 0 2 I 0 69 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219365 219671 188 + . gene_id 21 ; sequence AmOr26 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 219365 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219365 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219365 219671 188 + . alignment_id 21 ; Query AmOr26 ; Align 219365 317 75 ; Align 219513 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 188 Query range: 316 -> 394 Target range: 224359 -> 224658 317 : TyrAlaIleValTyrAlaSerMetValPheAsnIlePheIlePheCysTyrIleAlaG : 336 ||| !|||:!! ! !|||:::...|||||||||||||||||||||||||||!.!| TyrPheIleLeuLeuMetSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyG 224360 : TACTTCATACTACTCATGTCtcttactttcaatatttttatattttgttacatAGGAG : 224417 337 : luIleValThrGluGln >>>> Target Intron 1 >>>> GlyLysLysVal : 345 ||:!:|||.!!|||||| 65 bp :::|||::: luLeuValAlaGluGln++ ++CysGluLysIle 224418 : AGCTGGTAGCTGAAcaggt.........................agtgtgaaaaaatt : 224509 346 : GlyGluLysPheTyrMetThrGluTrpTyrGlnLeuProHisLysThrAlaLeuGlyL : 365 |||::! !! ||||||! !!!:||||||!:!||| !! !!.! ! !||| !!! GlyGlnValSerTyrMetIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysC 224510 : ggacaAGTGTCGTACATGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCT : 224569 366 : euValLeuIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysLeuIl : 384 !:!!|||||||||:!!! !|||!:! !||||||:!:|||||||||!!.:!!:! ysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetVa 224570 : GCATTCTGATAATCGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGT : 224626 385 : eGlnIleSerIleAlaThrPheAlaAlaVal : 394 !:!!:!:!!!:!!.!!||||||!.!! !||| lGluLeuCysLeuThrThrPheGlyAspVal 224627 : CGAACTGTGTCTAACCACTTTCGGTGACGTA : 224658 vulgar: AmOr26 316 394 . KQ414889.1 224359 224658 + 188 M 25 75 5 0 2 I 0 61 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224360 224658 188 + . gene_id 22 ; sequence AmOr26 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224360 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224360 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224360 224658 188 + . alignment_id 22 ; Query AmOr26 ; Align 224360 317 75 ; Align 224500 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 187 Query range: 340 -> 405 Target range: 244655 -> 244939 341 : GlnGlyLysLysValGlyGluLysPheTyrMetThrGluTrpTyrGlnLeuProHisL : 360 ||| !! !|||||||||||| ! !!|||||||||!!:|||||| ! ||||||!!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 361 : ysThrAlaLeuGlyLeuValLeuIleIleSerArgSerSerMetValIleLysIleTh : 379 :!! ! !|||! !|||:!!|||||||||!.!||||||!:!||||||:!!:!!||||| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 380 : rAlaGlyLysLeuIleGlnIleSerIleAlaThrPheAlaAla >>>> Target I : 394 ||||||||||:!!:!!!!.!!:|||:!! !||||||!.!! ! 89 rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAsp++ 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATgt............. : 244817 395 : ntron 1 >>>> ValPheLysAlaSerPheAlaTyrLeuAsnMetIle : 405 bp ||| ! |||.!!.!!||||||||||||||||||:!! ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeu 244818 : ............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTT : 244939 vulgar: AmOr26 340 405 . KQ414889.1 244655 244939 + 187 M 53 159 5 0 2 I 0 85 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244939 187 + . gene_id 23 ; sequence AmOr26 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244656 244814 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244814 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244815 244816 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244815 244903 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244902 244903 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244904 244939 . + . KQ414889.1 exonerate:protein2genome:local exon 244904 244939 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244939 187 + . alignment_id 23 ; Query AmOr26 ; Align 244656 341 159 ; Align 244904 394 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 187 Query range: 15 -> 164 Target range: 299671 -> 300120 16 : TyrAlaArgAspTyrGluTyrSerIleGlnValAsnArgTrpLeuLeuLysProIleG : 35 ||| !!.!||| .!.|||!!!:!:|||:!! !!:!||||||||||||||||||| TyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleG 299672 : TACCAAAATGACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCG : 299729 36 : lyAlaTrpProAsnLeu<->ThrLysAlaThrArgThrGluLysLeuLeuValLysLe : 53 ||!.!|||! ! ||| !::::!!!:!!:! !||| ! |||:!! !! :! lyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuValSerIleVa 299730 : GAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGT : 299786 54 : uLeuAsnPheIleCysHisSerLeuIleIlePheThrValMetProCysIleMetTyr : 72 !|||! |||||| !||| !:!:.!!|||! !|||:!!|||! ! ! ||| lLeuMetThrIleCysPheSerSerLeuPhePheIleValLeuProSerGlyHisTyr 299787 : TCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTAC : 299843 73 : IlePheTyrGluAspGluSerLeuLysThrArgMetLysAlaIleGlyProThrSerH : 92 ||||||!:!! !!!::!!|||:!! ! ..!!:!:!!|||!.!.!!||||||..!.!! IlePhePheAlaGluLysSerIleHisValLysValLysValPheGlyProValGlyP 299844 : ATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTT : 299903 93 : isTrpLeuMetGlyGluLeuAsnTyrCysCysLeuLeuMetArgAlaLysGluIleVa : 111 !!! ||| ..! :!!!!.||||||! !|||! !:!!!.!!.! ! !.!!! heCysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGl 299904 : TTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGA : 299960 112 : lTyrCysIleGluHisIleLysTyrAspTrpLysThrValArgArgAlaArg--AspA : 130 ! ||||||:!!|||:!!:!! ||| ... ..!|||## !!| uArgCysIleGlnHisValGluArgAsp---UnkUnkUnkUnkUnkUnkArg##HisA 299961 : ACGATGCATCCAACACGTCGAGAGAGAC---NNNNNNNNNNNNNNNNTTCGAATCATC : 300016 131 : rgGluLeuMetIleLysAsnAlaLysLeuGlyArgPheIleAlaCysIleAlaAlaLe : 149 || !:!!|||:!:!:! !!!.!! :!!.!!||| !:!:.!! !:!:..!|||:! rgThrIleMetLeuArgTyrValThrMetSerArgAsnLeuThrThrValCysAlaVa 300017 : GTACGATCATGTTGAGATACGTGACTATGAGCAGAAATCTGACGACCGTGTGCGCCGT : 300073 150 : uCysMetHisSerGlyIleMetSerTyrThrValIleThrGlyPhe : 164 !! !:!::!!:!!||| !||||||||| !..!:!:! ! !||| lPheLeuTyrAlaGlyGlyMetSerTyrHisThrValMetGlnPhe 300074 : GTTTCTTTACGCAGGTGGTATGTCGTATCACACGGTGATGCAGTTC : 300120 vulgar: AmOr26 15 164 . KQ414889.1 299671 300120 + 187 M 25 75 G 0 3 M 80 240 G 1 0 M 7 21 F 0 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299672 300120 187 + . gene_id 24 ; sequence AmOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299672 300120 . + . KQ414889.1 exonerate:protein2genome:local exon 299672 300120 . + . insertions 3 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local similarity 299672 300120 187 + . alignment_id 24 ; Query AmOr26 ; Align 299672 16 75 ; Align 299750 41 240 ; Align 299990 122 21 ; Align 300013 129 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 332 -> 394 Target range: 272990 -> 273176 333 : TyrIleAlaGluIleValThrGluGlnGlyLysLysValGlyGluLysPheTyrMetT : 352 |||::: ::: ::: ||| ||||||:::|||||| ! !!||||||| TyrLeuProLysLysAsnSer***GlnCysLysLysIleGlyGluValValTyrMetT 272991 : TACttaccgaagaaaaattcttaacagtgtaaaaaaattggcGAGGTAGTTTACATGA : 273048 353 : hrGluTrpTyrGlnLeuProHisLysThrAlaLeuGlyLeuValLeuIleIleSerAr : 371 ||.!.|||||| ! |||||| !||| ! !|||! !|||:!!|||||||||||||| hrAsnTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerAr 273049 : CGAACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAG : 273105 372 : gSerSerMetValIleLysIleThrAlaGlyLysLeuIleGlnIleSerIleAlaThr : 390 |!!!|||:!:|||||||||||||||||||||!:!:!!:!!! !!:|||:!: !||| gCysSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThr 273106 : ATGCAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACG : 273162 391 : PheAlaAlaVal : 394 |||!.!! !||| PheGlyAspVal 273163 : TTCGGCGATGTA : 273176 vulgar: AmOr26 332 394 . KQ414889.1 272990 273176 + 161 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272991 273176 161 + . gene_id 25 ; sequence AmOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272991 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 272991 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272991 273176 161 + . alignment_id 25 ; Query AmOr26 ; Align 272991 333 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 308 -> 403 Target range: 228259 -> 230433 309 : LysSerLysThrIleLeuGlyIleTyrAlaIleValTyrAlaSerMetValPheAsnI : 328 |||..! !|||.!! !! !! !|||:!! :!! ! !|||.!....||||||| LysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerPheThrPheAsnI 228260 : AAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCTTTAccttcaata : 228317 329 : lePheIlePheCysTyrIleAlaGluIleValThrGlu<-> >>>> Target Int : 341 ||||||||||||||||||||!.!|||||||||.!!||| 1889 b lePheIlePheCysTyrIleGlyGluIleValAlaGluHis++ 228318 : ttttcatattttgttaTATAGGAGAAATTGTTGCCGAACACgt............... : 228361 342 : ron 1 >>>> GlnGlyLysLysValGlyGluLysPheTyrMetThrGluTrpTyrG : 356 p !!!:!|||||||||||||||! ||||||! !|||||||||! ++---CysArgLysValGlyGluLysSerTyrMetIleGluTrpTyrA 228362 : ..........ag---TGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACC : 230290 357 : lnLeuProHisLysThrAlaLeuGlyLeuValLeuIleIleSerArgSerSerMetVa : 375 :!||| !! !!.! ! !||| !!! !:!!|||||||||:!!! !|||!:! rgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSe 230291 : GATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTC : 230347 376 : lIleLysIleThrAlaGlyLysLeuIleGlnIleSerIleAlaThrPheAlaAlaVal : 394 !! |||.!!|||||||||!!.:!!:!!:!!:!!|||:!! !||||||::!! !||| rThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnThrPheSerAspVal 230348 : GACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGACGTA : 230404 395 : PheLysAlaSerPheAlaTyrLeuAsn : 403 !! !! !! !!.!||| !||| SerIleIlePheSerValTyrThrAsn 230405 : AGTATCATATTCTCTGTTTACACGAAT : 230433 vulgar: AmOr26 308 403 . KQ414889.1 228259 230433 + 160 M 32 96 G 0 3 5 0 2 I 0 1885 3 0 2 G 1 0 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228260 230433 160 + . gene_id 26 ; sequence AmOr26 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 228260 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228260 228358 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228260 230433 160 + . alignment_id 26 ; Query AmOr26 ; Align 228260 309 96 ; Align 230248 342 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 340 -> 400 Target range: 238625 -> 238805 341 : GlnGlyLysLysValGlyGluLysPheTyrMetThrGluTrpTyrGlnLeuProHisL : 360 ||| !! !|||||||||||| ! !!|||||||||!!:|||||| ! ||||||!!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 361 : ysThrAlaLeuGlyLeuValLeuIleIleSerArgSerSerMetValIleLysIleTh : 379 :!! ! !|||! !|||:!!|||||||||!.!||||||!:!:!!|||:!!|||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 380 : rAlaGlyLysLeuIleGlnIleSerIleAlaThrPheAlaAlaValPheLysAlaSer : 398 ||||||||||:!!:!!!!.!!:|||:!! !||||||!.!! !||| !:!!.!!!:! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 399 : PheAla : 400 .!!||| LeuAla 238798 : CTTGCT : 238805 vulgar: AmOr26 340 400 . KQ414889.1 238625 238805 + 157 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238805 157 + . gene_id 27 ; sequence AmOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238805 157 + . alignment_id 27 ; Query AmOr26 ; Align 238626 341 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 316 -> 394 Target range: 301722 -> 302036 317 : TyrAlaIleValTyrAlaSerMetValPheAsnIlePheIlePheCysTyrIleAlaG : 336 !:! !! !:!!! .!!|||.!...!|||||||||||||||||||||||||||!.!| PhePheThrLeuLeuThrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyG 301723 : TTTTTCACTCTGTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCG : 301780 337 : luIleValThrGluGln >>>> Target Intron 1 >>>> GlyLysLysVal : 345 |||||:!!:!!|||||| 80 bp !!!..:!!:!! luIleLeuSerGluGln++ ++CysSerGlnIle 301781 : AGATTCTTTCCGAACAGgt.........................agTGTAGCCAAATT : 301887 346 : GlyGluLysPheTyrMetThrGluTrpTyrGlnLeuProHisLysThrAlaLeuGlyL : 365 |||..! !! ||| !! !!!:||||||.!.|||||| |||! !|||! !! !| GlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspL 301888 : GGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATC : 301947 366 : euValLeuIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysLeuIl : 384 ||:!!|||:!!! ! !! !|||..! ! |||:!!||||||||||||:!!|| euIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIl 301948 : TTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAAT : 302004 385 : eGlnIleSerIleAlaThrPheAlaAlaVal : 394 |.!.:!!|||:!: !||||||::!:!!||| eAspLeuSerLeuAsnThrPheSerSerVal 302005 : CGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: AmOr26 316 394 . KQ414889.1 301722 302036 + 155 M 25 75 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301723 302036 155 + . gene_id 28 ; sequence AmOr26 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301723 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301723 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301723 302036 155 + . alignment_id 28 ; Query AmOr26 ; Align 301723 317 75 ; Align 301878 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 340 -> 394 Target range: 254271 -> 254433 341 : GlnGlyLysLysValGlyGluLysPheTyrMetThrGluTrpTyrGlnLeuProHisL : 360 ||| !! !|||||||||||| ! !!|||||||||!!:|||||| ! ||||||!!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 361 : ysThrAlaLeuGlyLeuValLeuIleIleSerArgSerSerMetValIleLysIleTh : 379 :!! ! !|||! !|||:!!|||||||||!!!||||||!:!:!!|||:!!:!!||||| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 380 : rAlaGlyLysLeuIleGlnIleSerIleAlaThrPheAlaAlaVal : 394 ||||||||||:::......:::|||:!! !||||||!.!! !||| rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspVal 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTA : 254433 vulgar: AmOr26 340 394 . KQ414889.1 254271 254433 + 150 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254433 150 + . gene_id 29 ; sequence AmOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254433 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254433 150 + . alignment_id 29 ; Query AmOr26 ; Align 254272 341 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 339 -> 391 Target range: 283273 -> 283429 340 : GluGlnGlyLysLysValGlyGluLysPheTyrMetThrGluTrpTyrGlnLeuProH : 359 ..!||| !!||||||||||||||| ! !!|||||||||.!.! !!:! ! |||||| ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 360 : isLysThrAlaLeuGlyLeuValLeuIleIleSerArgSerSerMetValIleLysIl : 378 !!||| ! !|||..!|||:!!|||||||||||||||||||||:::||||||||||| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 379 : eThrAlaGlyLysLeuIleGlnIleSerIleAlaThrPhe : 391 |||||||...||||||||||||:::||| !|||||| eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPhe 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTC : 283429 vulgar: AmOr26 339 391 . KQ414889.1 283273 283429 + 149 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283429 149 + . gene_id 30 ; sequence AmOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283429 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283429 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283429 149 + . alignment_id 30 ; Query AmOr26 ; Align 283274 340 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 336 -> 394 Target range: 214848 -> 215022 337 : IleValThrGluGlnGlyLysLysValGlyGluLysPheTyrMetThrGluTrpTyrG : 356 |||:!! !:!!||| !!||||||||||||||| !! ||||||! !|||||||||! IleMetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrA 214849 : ATTATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACC : 214906 357 : lnLeuProHisLysThrAlaLeuGlyLeuValLeuIleIleSerArgSerSerMetVa : 375 :!|||||| !!!.! ! !||| !!! !:!!||||||!!::!!! !|||!:! rgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSe 214907 : GATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATC : 214963 376 : lIleLysIleThrAlaGlyLysLeuIleGlnIleSerIleAlaThrPheAlaAlaVal : 394 !:!!|||.!!|||||||||!!.:!!:!!:!!:!:||||||::!||||||::!::!||| rValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214964 : CGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215020 vulgar: AmOr26 336 394 . KQ414889.1 214848 215022 + 143 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214849 215022 143 + . gene_id 31 ; sequence AmOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214849 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214849 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214849 215022 143 + . alignment_id 31 ; Query AmOr26 ; Align 214849 337 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 188 -> 250 Target range: 202712 -> 202898 189 : LeuLeuAspValArgPheSerProMetAsnGluIleValPheAlaLeuGlnLeuLeuS : 208 :!!:!!|||||||||!:!||||||:!!||||||||| !!|||:!!:!!!:!:!!:!!: IleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleValA 202713 : ATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAG : 202770 209 : erGlyPheIleSerThrSerValThrValGlyAlaCysGlyLeuAlaAlaValLeuAl : 227 !!! !.!!:!!! ! !.!!|||||||||||||||||| !!|||.!!|||:!!!!!|| laValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAl 202771 : CTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGC : 202827 228 : aMetHisAlaCysGlyGlnPheAsnValValMetIleArgSerAspLysLeuValLys : 246 |:!:|||! !|||||||||.!.:!!|||:!!||| ! !! !!!: ! |||:!! ! aValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMetAsp 202828 : GGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGAT : 202884 247 : AspAsnAsnGlu : 250 ! !..!:::!!: GlyArgSerAsp 202885 : GGTCGTTCGGAT : 202898 vulgar: AmOr26 188 250 . KQ414889.1 202712 202898 + 138 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202713 202898 138 + . gene_id 32 ; sequence AmOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202713 202898 . + . KQ414889.1 exonerate:protein2genome:local exon 202713 202898 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202713 202898 138 + . alignment_id 32 ; Query AmOr26 ; Align 202713 189 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 337 -> 403 Target range: 292380 -> 292578 338 : ValThrGluGlnGlyLysLysValGlyGluLysPheTyrMetThrGluTrpTyrGlnL : 357 ||| ! ! ||||||!..:!!:!!!.!.!. ! !||| ||||||||||||.!.| ValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnL 292381 : GTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATC : 292438 358 : euProHisLysThrAlaLeuGlyLeuValLeuIleIleSerArgSerSerMetValIl : 376 |||||...::!! !|||! !! !:!!||||||:!::!!:!!! !!!!!.! !|| euProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIl 292439 : TGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGAT : 292495 377 : eLysIleThrAlaGlyLysLeuIleGlnIleSerIleAlaThrPheAlaAlaValPhe : 395 ||||:!!||||||||||||:!!.!! :!!|||:!: !||||||!.!|||||| ! eLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArg 292496 : CAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGT : 292552 396 : LysAlaSerPheAlaTyrLeuAsn : 403 :!!:!!!.!.!.!.!! :!!:!! GluSerLysLeuValLeuIleHis 292553 : GAATCAAAACTAGTCTTGATACAC : 292578 vulgar: AmOr26 337 403 . KQ414889.1 292380 292578 + 125 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292381 292578 125 + . gene_id 33 ; sequence AmOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292381 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292381 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292381 292578 125 + . alignment_id 33 ; Query AmOr26 ; Align 292381 338 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 340 -> 394 Target range: 206239 -> 206401 341 : GlnGlyLysLysValGlyGluLysPheTyrMetThrGluTrpTyrGlnLeuProHisL : 360 |||..! ! |||||| !! !! !! !! !..!.!.||||||!::||||||:!!! GlnAsnHisValValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnA 206240 : CAGAACCACGTCGTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACA : 206297 361 : ysThrAlaLeuGlyLeuValLeuIleIleSerArgSerSerMetValIleLysIleTh : 379 :! !|||! !..!:!!:!!|||||||||:!!! !|||!:! !||||||:!!|| rgHisAlaArgSerMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuTh 206298 : GACATGCGCGCTCTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAAC : 206354 380 : rAlaGlyLysLeuIleGlnIleSerIleAlaThrPheAlaAlaVal : 394 ||||||||||:!!.!!:!!!!:|||:!!|||!:!|||.!!! !||| rAlaGlyLysMetPheGluMetSerLeuAlaSerPheThrAspVal 206355 : AGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTCACCGATGTA : 206401 vulgar: AmOr26 340 394 . KQ414889.1 206239 206401 + 110 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206240 206401 110 + . gene_id 34 ; sequence AmOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206240 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206240 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206240 206401 110 + . alignment_id 34 ; Query AmOr26 ; Align 206240 341 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 23 -> 122 Target range: 200544 -> 200845 24 : IleGlnValAsnArgTrpLeuLeuLysProIleGlyAlaTrpProAsnLeuThrLysA : 43 |||||| !|||||||||:!!|||||| !!!!:!.! !||| !:!! !:!!!!. IleGlnTrpAsnArgTrpIleLeuLysSerMetAlaLeuTrpPheAspLysSerAsnI 200545 : ATACAGTGGAATCGTTGGATCTTGAAATCAATGGCTTTGTGGTTTGACAAATCCAACA : 200602 44 : laThrArgThrGluLysLeuLeu-ValLysLeuLeuAsnPheIleCysHisSerLeuI : 62 !:!!! !..!||||||! !|||#..!::!|||:!!!:! !:!!||| ! .!!|||! leSerProValGluLys***Leu#ThrArgLeuIleSerAlaValCys***GlyLeuM 200603 : TTTCACCGGTCGAGAAATAACTACACTCGGCTAATCAGTGCCGTTTGTTAAGGATTGA : 200660 63 : leIlePheThrValMetProCysIleMetTyrIlePheTyrGluAspGluSerLeuLy : 81 !: ::: :::::: |||! !:!::!!:!:||| !!!:! |||!:!:!! etGlyTyrPheLeuIleLeuCysSerLeuHisValPheLeuAspValGluAsnIleLe 200661 : TGggttactttttaatattatgcAGTTTACACGTGTTTCTTGACGTAGAAAATATACT : 200717 82 : sThrArgMetLysAlaIleGlyProThrSerHisTrpLeuMetGlyGluLeuAsnTyr : 100 ! !!:!!!:||| !.!!! !||| ! !! ! !:!!!.! !:!! ! uLysLysIleLysLeuPheValProLeuValLeuLeuCysLeuAlaThrIleLeuLys 200718 : TAAAAAGATTAAATTGTTTGTTCCCCTAGTACTACTTTGCTTGGCTACGATTTTGAAG : 200774 101 : CysCysLeuLeuMetArgAlaLysGluIleValTyr<->CysIleGluHisIleLysT : 119 ||| !|||! !:!:! ! ! ! !!: !..!||| ||| !||||||||||||! CysHisLeuSerValLeuHisAspAspAspThrTyrThrCysGlyGluHisIleLysT 200775 : TGTCATTTGTCGGTACTTCATGATGACGATACTTACACGTGTGGCGAGCATATAAAAT : 200834 120 : yrAspTrpLys : 122 ::!!:|||!:! rpGluTrpArg 200835 : GGGAGTGGAGG : 200845 vulgar: AmOr26 23 122 . KQ414889.1 200544 200845 + 100 M 27 81 F 0 1 M 62 186 G 0 3 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 200545 200845 100 + . gene_id 35 ; sequence AmOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 200545 200845 . + . KQ414889.1 exonerate:protein2genome:local exon 200545 200845 . + . insertions 3 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local similarity 200545 200845 100 + . alignment_id 35 ; Query AmOr26 ; Align 200545 24 81 ; Align 200627 51 186 ; Align 200816 113 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 635 Query range: 0 -> 261 Target range: 204200 -> 204980 1 : MetSerArgIleGlyAsnAlaGluAspGlyMetArgHisThrIleTrpPheAlaTyrM : 20 |||||| !!|||!.!!..||||||!!:! !:!!|||:!!.!!! ! ! |||!.! ! MetSerGlyIleAlaArgAlaGluGluAspLeuArgTyrAlaThrArgPheValLysP 204201 : ATGTCTGGAATCGCGAGGGCAGAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGC : 204258 21 : etLeuLeuGlyLysLeuGlyAlaTrpProAsnArgAlaThrSerSerThrSerPheSe : 39 !:!!||||||! !:!!||||||||||||! !! !!.!!.!|||||| !!|||!! roIleLeuGlyIleValGlyAlaTrpProIleProValAsnSerSer---ProPheTh 204259 : CGATTTTAGGGATAGTCGGTGCGTGGCCGATTCCAGTGAACTCCTCT---CCGTTCAC : 204312 40 : rArgThrArgAsnCysIleLeuIlePheMetCysTyrSerValGlnLeuIleIleLeu : 58 !||| ! !... ! ||| ! ! ! :!: !||| ::: ...::::!::!! rArgLeuValArgArgIleGluHisValValThrTyrPheLeuPhePheLeuMetIle 204313 : GAGGCTAGTACGGCGAATAGAACACGTAGTCACCtatttcctcttctttctgaTGATC : 204369 59 : IleProGlyLeuLeuHisPhePheLeuLysGluLysAspSerArgLysLysValLysI : 78 :!!||||||||||||:!! ! |||||||||||||||:!!.!!!:!! ::::!!|||| ValProGlyLeuLeuTyrValPheLeuLysGluLysAsnGlyLysIleArgLeuLysI 204370 : GTACCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGA : 204429 79 : leLeuIleProLeuIleAsnGlyTyrLeuGlnLeuCysArgTyrSerLeuValLeuAr : 97 ||||| |||:!!:!:||| !! !:!!|||!!!! !!:!||||||:!!:!!||| leLeuGlyProIleValAsnCysSerIleGlnPhePheLysTyrSerValIleLeuTy 204430 : TTCTCGGGCCGATCGTGAACTGCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTA : 204486 98 : gSerAlaAsnLysLeuCysHisLeuLeuAsnGluMetLysLysAspTrpMetAsnIle : 116 ! !! !:!!|||:!! ! !|||||| !!:!:!:::||||||!!:.!. ! rArgIleAspLysIleGlnLysSerLeuAsnThrIleArgArgAspTrpIleGluAla 204487 : CCGGATCGACAAAATTCAGAAGAGTTTGAACACCATCAGACGCGACTGGATAGAGGCT : 204543 117 : SerGluGluAspArgLeuIlePheArgArgLysAlaSerIleGlyHisArgLeuMetS : 136 !!!!!:|||:!!||||||||||||||| !||||||!.!||||||!..|||:!!:!! ThrAspGluAsnArgLeuIlePheArgSerLysAlaLysIleGlyArgArgValLeuL 204544 : ACGGATGAAAATCGGTTGATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGC : 204603 137 : erValValAlaIleIleMetTyrSerAlaGlyLeuGlyTyrArgThrPheIleProLe : 155 !:!!!.!||| !! !||||||.!!!.!|||||| !!|||||||||.!!:!!||||| euIleAlaAlaAlaThrMetTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLe 204604 : TGATTGCAGCCGCCACTATGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTT : 204660 156 : uSerLysGlyArgIleLeuLeuProAspAsnThrThrIleArgLeuLeuProCysPro : 174 |! !!:!|||! !|||:!! !|||||||||..!|||||||||! !|||||||||||| uLeuArgGlyThrIleValThrProAspAsnValThrIleArgProLeuProCysPro 204661 : GTTGAGAGGAACGATCGTAACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCG : 204717 175 : GlyTyrTyrIlePhePheAsnGluGlnIleThrProAsnTyrGluIleValPheThrL : 194 ! !|||::::::||||||||||||||| !:!!|||||||||||||||||||||! !| ValTyrPheValPhePheAsnGluGlnArgSerProAsnTyrGluIleValPheIleL 204718 : GTTtactttgttttctttaacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATAC : 204777 195 : euGlnValIleGlyGlyLeuLeuSerTyrThrIleMetCysGlyThrThrSerMetCy : 213 |||||:!!!!:!.!|||!!!:!!!!!|||.!!:!!!!: !!|||||| !.!!||||| euGlnIleMetAlaGlyPheValThrTyrAlaValIleSerGlyThrCysGlyMetCy 204778 : TGCAAATTATGGCTGGTTTTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTG : 204834 214 : sAlaMetLeuCysLeuHisAlaThrSerLeuLeuArgIleLeuValLysLysIleAsn : 232 ||||:!!!!! !||||||||| !|||:!!|||||||||||||||!!.|||!!:||| sAlaLeuPheValLeuHisAlaCysSerMetLeuArgIleLeuValAsnLysMetAsn 204835 : CGCGCTGTTCGTTCTCCACGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAAC : 204891 233 : GluLeuThrLysGlnProAspIleAsnGluSerAlaValHisMetLysIleThrAspI : 252 ! !|||..! ! :!! !!|||!!:!.!|||!!! !||||||! !||||||.!!|||| AlaLeuValAspLysAlaAspMetThrGluThrLeuValHisArgLysIleAlaAspI 204892 : GCACTTGTGGATAAGGCGGACATGACCGAGACACTTGTGCACAGGAAGATCGCTGATA : 204951 253 : leValArgTyrGlnThrLysIleLysGln : 261 |||||..!||||||||||||||||||::! leValGluTyrGlnThrLysIleLysArg 204952 : TTGTTGAATATCAGACGAAGATAAAGAGG : 204980 vulgar: AmOr15 0 261 . KQ414889.1 204200 204980 + 635 M 35 105 G 1 0 M 225 675 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204201 204980 635 + . gene_id 1 ; sequence AmOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204201 204980 . + . KQ414889.1 exonerate:protein2genome:local exon 204201 204980 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 204201 204980 635 + . alignment_id 1 ; Query AmOr15 ; Align 204201 1 105 ; Align 204306 37 675 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 241 Query range: 294 -> 384 Target range: 206050 -> 206401 295 : GluTrpGluAspSerAspAlaThrAlaAlaIleIleTyrLeuLeuLeuGluAlaSerV : 314 |||||||||:!!!:!:!!.!!||||||!.!|||:!:|||:!! !|||:!! !||| GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 315 : alPheGlyValThrPheThrMetCysTyrValGlyGlnIleLeuIleAspGlu >>> : 332 ! ! !..!|||! !:!:||||||:!!||||||:!!|||||||||:!! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 333 : > Target Intron 1 >>>> GlyAsnAsnValArgArgMetSerIleThrIleA : 343 81 bp ..!:!! !||| !! !! ||| !|||:!:: ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 344 : spTrpTyrArgPheProAlaLysGluAlaArgAsnLeuIleLeuValIleIleMetSe : 362 !!|||||||||.!!||| !!:!.!.||||||::!:!!||||||:!!||| !||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 363 : rSerTyrProValLysLeuThrAlaGlyLysValValAspIleSerLeuSerThrTyr : 381 |!:!||||||:!!||||||||||||||||||:!! !!!!:!!:||||||:!!!:!!:! rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 382 : ThrAspIle : 384 ||||||:!! ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: AmOr15 294 384 . KQ414889.1 206050 206401 + 241 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 241 + . gene_id 2 ; sequence AmOr15 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 241 + . alignment_id 2 ; Query AmOr15 ; Align 206051 295 111 ; Align 206243 332 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 229 Query range: 12 -> 237 Target range: 259772 -> 260450 13 : HisThrIleTrpPheAlaTyrMetLeuLeuGlyLysLeuGlyAlaTrpProAsnArgA : 32 :!!!:!:!! ||| ! !!!!||| ! !:!!|||||||||||| ! !: TyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpPro---ProS 259773 : TATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCA---CCTT : 259827 33 : laThrSerSerThrSerPheSerArgThrArgAsnCysIleLeuIlePheMetCysTy : 51 !!:!!|||!!!|||!!!.!!..!!:!! !! !::! !||||||||||||!!:||||| erSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTy 259828 : CATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTA : 259884 52 : rSerValGlnLeuIleIleLeuIleProGlyLeuLeuHisPhePheLeuLysGluLys : 70 ||||..! !|||:!!! !||||||||| !!:!!||||||.!..!.|||:!!:!!:!! rSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGlu 259885 : CAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAG : 259941 71 : AspSerArgLysLysValLysIleLeuIleProLeuIleAsnGlyTyrLeuGlnLeuC : 90 ..!! ! !! !|||..!|||:!:||| !||||||! !:!! !!!:!:!! ! ! SerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysI 259942 : AGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTA : 260001 91 : ysArgTyrSerLeuValLeuArgSerAlaAsnLysLeuCysHisLeuLeuAsnGluMe : 109 !!.!|||!!! !:!!||| !!!!!.!!.. ! :!! ! !! !:!!.!..!.:! leAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisVa 260002 : TTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGT : 260058 110 : tLysLysAspTrpMetAsnIleSer<->GluGluAspArgLeuIlePheArgArgLys : 127 !:!!!!.||||||! ! !|||!!! |||:!!|||!:! !:!:.!. !||| ! lGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyr 260059 : GGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATAC : 260115 128 : AlaSerIleGlyHisArgLeuMetSerValValAlaIleIleMetTyrSerAlaGlyL : 147 |||!.!.!!|||... !:!! :!! ! !||| !.!!:!! ! .!!!.!! !| AlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValL 260116 : GCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTC : 260175 148 : euGlyTyrArgThrPheIleProLeuSerLysGlyArgIleLeuLeuProAspAsnTh : 166 || !!!:! !! ! !!! !||||||! !! ! !|||! !:!! !:!!.!.|| euCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluTh 260176 : TGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGAC : 260232 167 : rThrIle<->ArgLeuLeuProCysProGlyTyrTyrIlePhePheAsnGluGlnIle : 184 |! !||| !.!|||||||||||| !!! !||| ! .!..!.|||! !.!. ! rArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAsp 260233 : GAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGAC : 260289 185 : ThrProAsnTyrGluIleValPheThrLeuGlnValIleGlyGlyLeuLeuSerTyrT : 204 !:!|||! !!|||||||||.!!..!:!!||| !!:!!..!|||!!!:!! ! !!: SerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnS 260290 : AGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATT : 260349 205 : hrIleMetCysGlyThrThrSerMetCysAlaMetLeuCysLeuHisAlaThrSerLe : 223 !!! !! !|||! ! !|||:!:...|||:!:||| ! !|||||| !.!!! erSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGl 260350 : CGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCA : 260406 224 : uLeuArgIleLeuValLysLysIleAsnGluLeuThrLysGln : 237 !|||!.!:!:|||:!!:!! !|||!..|||!!!..! ! :!! nLeuAsnValLeuMetGluTrpIleThrGluPheValAspGlu 260407 : GTTGAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAG : 260450 vulgar: AmOr15 12 237 . KQ414889.1 259772 260450 + 229 M 17 51 G 1 0 M 87 261 G 0 3 M 51 153 G 0 3 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259773 260450 229 + . gene_id 3 ; sequence AmOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259773 260450 . + . KQ414889.1 exonerate:protein2genome:local exon 259773 260450 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 259773 260450 229 + . alignment_id 3 ; Query AmOr15 ; Align 259773 13 51 ; Align 259824 31 261 ; Align 260088 118 153 ; Align 260244 169 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 209 Query range: 20 -> 259 Target range: 274407 -> 275130 21 : LeuLeuGlyLysLeuGlyAlaTrpProAsnArgAlaThrSerSerThrSerPheSerA : 40 !!!||| ! :!!|||||||||||| !|||:!! !!!!!|||!.!|||..!| PheLeuLysProIleGlyAlaTrpPro---LeuAlaSerProThrThrLysPheGluA 274408 : TTCTTGAAGCCTATAGGCGCGTGGCCG---TTAGCCTCGCCCACCACGAAATTCGAAC : 274462 41 : rgThrArgAsnCysIleLeuIlePheMetCysTyrSerValGlnLeuIleIleLeuIl : 59 ||! !! !::: !:::|||||||||:::||||||!!! !! !||| !! !:!!|| rgIleLeuSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIl 274463 : GAATCCTTTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTAT : 274519 60 : eProGlyLeuLeuHisPhePheLeuLysGluLysAspSerArgLysLysValLysIle : 78 ||||.!!:!!!!!|||.!!.!.||| !!!::!!..! !!.! !|||:!!|||:!: eProSerIlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeu 274520 : CCCAAGCATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTG : 274576 79 : LeuIleProLeuIleAsnGlyTyrLeuGlnLeuCysArgTyrSerLeuValLeuArgS : 98 ||| !|||||| !:!! !!!:!:!! ! ! !!.!|||!!! !:!!|||! ! LeuGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuA 274577 : CTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTAC : 274636 99 : erAlaAsnLysLeuCysHisLeuLeuAsnGluMetLysLysAspTrpMetAsnIleSe : 117 !!::!!!.:!!:!! !! !! !:!!.!..!.|||:!!! !||||||! !! !:!:!! rgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValTh 274637 : GCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGAC : 274693 118 : rGlu<->GluAspArgLeuIlePheArgArgLysAlaSerIleGlyHisArgLeuMet : 135 !..! ||||||!:!! !:!:.!. !!:!!!.|||!.!||||||!.! !:!! ! rArgProGluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAla 274694 : CAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCG : 274750 136 : SerValValAlaIleIleMetTyrSerAlaGlyLeuGlyTyrArgThrPheIleProL : 155 ! ! !! !||| .!!||| ! !!!!.!! !||| !!||| !!..!.!.! ! !!! IlePheCysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaP 274751 : ATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGT : 274810 156 : euSerLysGlyArgIleLeuLeuProAspAsnThr<->ThrIleArgLeuLeuProCy : 173 !!!!!! ! !! !:!!! !:!! !:!!.!.||| |||:!:!.!:!!|||||||| heThrMetGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCy 274811 : TCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTG : 274867 174 : sProGlyTyrTyrIlePhePheAsnGluGlnIleThrProAsnTyrGluIleValPhe : 192 | !!.!||| ! ! .!! !! ! !.!.! !:!|||!.. !!|||||||||.!! sLysAlaTyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValLeu 274868 : TAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTT : 274924 193 : ThrLeuGlnValIleGlyGlyLeuLeuSerTyrThrIleMetCysGlyThrThrSerM : 212 .!!! !||| !!:!:..!|||!!!:!! ! !!:!!! ! ! !|||.!! !|||: AlaSerGlnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerL 274925 : GCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCC : 274984 213 : etCysAlaMetLeuCysLeuHisAlaThrSerLeuLeuArgIleLeuValLysLysIl : 231 !:..!|||:!!!!!... !|||||| !.!!! !|||!!!:!:|||:!!! ! !|| euAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIl 274985 : TTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGAT : 275041 232 : eAsnGluLeuThrLysGlnPro<->AspIleAsnGluSerAlaValHisMetLysIle : 249 |!.!|||!!!..!!!.!!. !! ||| |||::::::... :!!||| eThrGluPheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIle 275042 : CACCGAGTTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATC : 275098 250 : ThrAspIleValArgTyrGlnThrLysIle : 259 !! :!!|||..!:!!!!. !!:!:!! GlyValValValGluHisHisLeuArgVal 275099 : GGCGTGGTTGTCGAACATCATCTGAGGGTA : 275130 vulgar: AmOr15 20 259 . KQ414889.1 274407 275130 + 209 M 9 27 G 1 0 M 88 264 G 0 3 M 48 144 G 0 3 M 72 216 G 0 3 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274408 275130 209 + . gene_id 4 ; sequence AmOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274408 275130 . + . KQ414889.1 exonerate:protein2genome:local exon 274408 275130 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 274408 275130 209 + . alignment_id 4 ; Query AmOr15 ; Align 274408 21 27 ; Align 274435 31 264 ; Align 274702 119 144 ; Align 274849 167 216 ; Align 275068 239 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 207 Query range: 294 -> 399 Target range: 301686 -> 302163 295 : GluTrpGluAspSerAspAlaThrAlaAlaIleIleTyrLeuLeuLeuGluAlaSerV : 314 ||||||:!!:!!||||||.!!! !||| !:!:! !!:!!!! !||| !.!!||| GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerP 301687 : GAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGT : 301744 315 : alPheGlyValThrPheThrMetCysTyrValGlyGlnIleLeuIleAspGlu >>> : 332 !! ! ! !! !|||! !.!.||||||:!!|||:!!|||||| !!!::!! heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301745 : TCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt... : 301800 333 : > Target Intron 1 >>>> GlyAsnAsnValArgArgMetSerIleThrIleA : 343 80 bp !!!:!.!.:!! !! ! ||| ! !|||| ++CysSerGlnIleGlySerAlaSerTyrGluIleA 301801 : ......................agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCG : 301911 344 : spTrpTyrArgPheProAlaLysGluAlaArgAsnLeuIleLeuValIleIleMetSe : 362 ||||||||!.!!!.|||||||||..!||| !:!!|||||||||:!!! !:!:!!:|| spTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSe 301912 : ATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATC : 301968 363 : rSerTyrProValLysLeuThrAlaGlyLysValValAspIleSerLeuSerThrTyr : 381 |..!|||||| !||||||||||||||||||:!!:!!|||:!!||||||!:!|||!:! rGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPhe 301969 : GCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTC : 302025 382 : ThrAsp >>>> Target Intron 2 >>>> IleIleLysAlaThrValGlyTy : 391 !:!..! 82 bp :!::!:|||.!!:!!|||! !|| SerSer++ ++ValValLysThrSerValValTy 302026 : AGCTCTgt.........................agGTGGTGAAAACATCGGTGGTGTA : 302137 392 : rLeuAsnMetLeuArgLysValThr : 399 |||||||:!:||||||! !|||||| rLeuAsnLeuLeuArgThrValThr 302138 : CTTGAATTTACTGCGAACAGTTACA : 302163 vulgar: AmOr15 294 399 . KQ414889.1 301686 302163 + 207 M 37 111 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301687 302163 207 + . gene_id 5 ; sequence AmOr15 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302163 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302163 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301687 302163 207 + . alignment_id 5 ; Query AmOr15 ; Align 301687 295 111 ; Align 301878 332 156 ; Align 302116 384 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 193 Query range: 294 -> 394 Target range: 280091 -> 280465 295 : GluTrpGluAspSerAspAlaThrAlaAlaIleIleTyrLeuLeuLeuGluAlaSerV : 314 |||||||||.!.!:!||||||! !!.!.!!.!!! ||||||:!!!!! !|||: GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerL 280092 : GAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTT : 280149 315 : alPheGlyValThrPheThrMetCysTyrValGlyGlnIleLeuIleAspGlu >>> : 332 !! ! !..!|||! !:!:||||||:!!|||:!!|||||| !!!:::: euThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 280150 : TAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt... : 280205 333 : > Target Intron 1 >>>> GlyAsnAsnValArgArgMetSerIleThrIleA : 343 74 bp !! !!.||| !! ! !!! !! !|||| ++CysLeuLysValGlyValSerThrTyrMetIleA 280206 : ......................agTGCTTAAAAGTCGGCGTGTCAACTTACATGATCG : 280310 344 : spTrpTyrArgPheProAlaLysGluAlaArgAsnLeuIleLeuValIleIleMetSe : 362 |||||||||||!!.|||!.!|||:!!|||!:!..!|||||||||:!!.!! !:!!|| spTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaValSe 280311 : ACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCGTGTC : 280367 363 : rSerTyrProValLysLeuThrAlaGlyLysValValAspIleSerLeuSerThrTyr : 381 |!:!! ! !!:!!||||||||||||||||||:!!:!!|||:!!|||||||||!:!!:! rAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPhe 280368 : GAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTC : 280424 382 : ThrAspIleIleLysAlaThrValGlyTyrLeuAsnMet : 394 !..!:!:! !! !!.!:!!..!|||! !:!!:!! CysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280425 : TGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: AmOr15 294 394 . KQ414889.1 280091 280465 + 193 M 37 111 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280092 280465 193 + . gene_id 6 ; sequence AmOr15 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280092 280465 193 + . alignment_id 6 ; Query AmOr15 ; Align 280092 295 111 ; Align 280277 332 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 193 Query range: 294 -> 384 Target range: 305100 -> 305783 295 : GluTrpGluAspSerAspAlaThrAlaAlaIleIleTyrLeuLeuLeuGluAlaSerV : 314 !!:||||||..!|||:!!.!!..!::! !! !! !||| !:!!||| ! !|||| AspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValLeuLeuIleSerV 305101 : GATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGTTACTGATATCTG : 305158 315 : alPheGlyValThrPheThrMetCysTyrValGlyGlnIleLeuIleAspGlu >>> : 332 || ! !! !|||! !:!:||||||:!!|||:!!||||||!!:!!::!! alThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMetGluLys++ 305159 : TAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTATGGAAAAGgt... : 305214 333 : > Target Intron 1 >>>> GlyAsnAsnValArgArgMetSerIleThrIleA : 343 413 bp .!!!:!!:!||| !! ! !!!.!!! !|||. ++SerSerSerValGlyLeuSerCysPheMetIleS 305215 : ......................agAGCAGTAGCGTTGGATTATCCTGTTTTATGATCA : 305658 344 : spTrpTyrArgPheProAlaLysGluAlaArgAsnLeuIleLeuValIleIleMetSe : 362 .!||||||!.!!!.|||.!!||| ! !!.!..!|||||||||:!!||| !||||| erTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleLeuIleIleAlaMetSe 305659 : GTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTTTAATCATTGCCATGTC : 305715 363 : rSerTyrProValLysLeuThrAlaGlyLysValValAspIleSerLeuSerThrTyr : 381 |||| !!|||!.!|||:!!!:!||||||||||||||||||:!!||||||||||||!:! rSerAsnProAlaLysIleSerAlaGlyLysValValAspLeuSerLeuSerThrPhe 305716 : AAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTATCTTTATCCACATTT : 305772 382 : ThrAspIle : 384 !:!!:!: GlyAsnVal 305773 : GGAAACGTG : 305783 vulgar: AmOr15 294 384 . KQ414889.1 305100 305783 + 193 M 37 111 5 0 2 I 0 409 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305101 305783 193 + . gene_id 7 ; sequence AmOr15 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305101 305783 193 + . alignment_id 7 ; Query AmOr15 ; Align 305101 295 111 ; Align 305625 332 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 190 Query range: 294 -> 399 Target range: 277371 -> 277842 295 : GluTrpGluAspSerAspAlaThrAlaAlaIleIleTyrLeuLeuLeuGluAlaSerV : 314 ||||||...|||||||||!.! !.!! !! !! :!!!!!:!!:!! !|||: GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 315 : alPheGlyValThrPheThrMetCysTyrValGlyGlnIleLeuIleAspGlu >>> : 332 !: ||||||:!:||||||:!!|||:!!||||||! !!!::!! etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 333 : > Target Intron 1 >>>> GlyAsnAsnValArgArgMetSerIleThrIleA : 343 72 bp !!!!.!!.||| !!..!:!! ! !! !! : ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 344 : spTrpTyrArgPheProAlaLysGluAlaArgAsnLeuIleLeuValIleIleMetSe : 362 !!|||||| !!!.|||! !|||!!: !! !||||||:!!|||:!!||| !! || snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 363 : rSerTyrProValLysLeuThrAlaGlyLysValValAspIleSerLeuSerThrTyr : 381 |||| :::|||:::||||||||||||::::::...:::|||:!!! !|||!:! rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 382 : ThrAsp >>>> Target Intron 2 >>>> IleIleLysAlaThrValGlyTy : 391 !||| 84 bp :!!||||||.!!||| !!...|| GlyAsp++ ++ValIleLysThrThrPheAlaTy 277703 : GGCGATgt.........................agGTAATAAAAACCACTTTCgcgta : 277816 392 : rLeuAsnMetLeuArgLysValThr : 399 |||||||:::||||||:!!..!||| rLeuAsnIleLeuArgGlnThrThr 277817 : tttaaatattctacgCCAAACGACG : 277842 vulgar: AmOr15 294 399 . KQ414889.1 277371 277842 + 190 M 37 111 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277842 190 + . gene_id 8 ; sequence AmOr15 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277842 190 + . alignment_id 8 ; Query AmOr15 ; Align 277372 295 111 ; Align 277555 332 156 ; Align 277795 384 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 188 Query range: 294 -> 397 Target range: 264537 -> 265004 295 : GluTrpGluAspSerAspAlaThrAlaAlaIleIleTyrLeuLeuLeuGluAlaSerV : 314 |||||||||..! ||| !! !|||!!!:!!:!! ! !|||: GluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerM 264538 : GAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATACTGATATCAA : 264595 315 : alPheGlyValThrPheThrMetCysTyrValGlyGlnIleLeuIleAspGlu >>> : 332 !!! !||| !! !||| !|||||||||:!!|||:!!||||||! !!!:::: etCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGln++ 264596 : TGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcaggt... : 264651 333 : > Target Intron 1 >>>> GlyAsnAsnValArgArgMetSerIleThrIleA : 343 78 bp !!!!.!!.||| !!..!:!! ! !! ! : ++CysLysLysValGlyGluValValTyrMetSerA 264652 : ......................agTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGA : 264760 344 : spTrpTyrArgPheProAlaLysGluAlaArgAsnLeuIleLeuValIleIleMetSe : 362 !!|||||| !!!.||| !|||!!: !! !:!!|||||||||:!!|||:!!! || snTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLeuIleIleLeuArgSe 264761 : ATTGGTATTACTTACCCTACAAAGATATCCTTGATCTGATTCTCATCATTTTAAGATC : 264817 363 : rSerTyrProValLysLeuThrAlaGlyLysValValAspIleSerLeuSerThrTyr : 381 |||| ! !!|||!!!||||||||||||:!!:!! !!!!:|||:!!! !|||!:! rSerValValPheLysPheThrAlaGlyLysIleLeuHisMetSerMetTyrThrPhe 264818 : CAGCGTGGTGTTTAAATTCACCGCTGGAAAGATACTTCACATGTCCATGTACACATTC : 264874 382 : ThrAsp >>>> Target Intron 2 >>>> IleIleLysAlaThrValGlyTy : 391 !:!||| 80 bp :!!||||||:!!:!! !! !|| SerAsp++ ++ValIleLysSerSerPheThrTy 264875 : AGTGACgt.........................aggTAATCAAATCCTCTTTCACGTA : 264984 392 : rLeuAsnMetLeuArgLys : 397 |||||||:!:||||||:!! rLeuAsnLeuLeuArgGln 264985 : CTTAAACTTACTTCGCCAA : 265004 vulgar: AmOr15 294 397 . KQ414889.1 264537 265004 + 188 M 37 111 5 0 2 I 0 74 3 0 2 M 52 156 5 0 2 I 0 76 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264538 265004 188 + . gene_id 9 ; sequence AmOr15 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264538 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264726 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265004 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265004 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264538 265004 188 + . alignment_id 9 ; Query AmOr15 ; Align 264538 295 111 ; Align 264727 332 156 ; Align 264963 384 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 294 -> 394 Target range: 286878 -> 287252 295 : GluTrpGluAspSerAspAlaThrAlaAlaIleIleTyrLeuLeuLeuGluAlaSerV : 314 |||||||||.!.|||!!:.!!! !!.!.!!|||! |||! ! !||| !!.!||| GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerP 286879 : GAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTT : 286936 315 : alPheGlyValThrPheThrMetCysTyrValGlyGlnIleLeuIleAspGlu >>> : 332 !! ! !..!|||! !:!:||||||:!!|||:!!|||||| !!!:::: heThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286937 : TCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt... : 286992 333 : > Target Intron 1 >>>> GlyAsnAsnValArgArgMetSerIleThrIleA : 343 74 bp !! !!.||| !! ! !!! !! !|||| ++CysLeuLysValGlyLeuSerThrTyrMetIleA 286993 : ......................agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCG : 287097 344 : spTrpTyrArgPheProAlaLysGluAlaArgAsnLeuIleLeuValIleIleMetSe : 362 |||||||||||!!.|||!.!||| !|||!:!..!|||||||||:!!.!! !:!!|| spTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSe 287098 : ACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTC : 287154 363 : rSerTyrProValLysLeuThrAlaGlyLysValValAspIleSerLeuSerThrTyr : 381 |!:!! ! !!:!!||||||||||||||||||:!!:!!|||:!!|||||||||!:!!:! rAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPhe 287155 : GAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTC : 287211 382 : ThrAspIleIleLysAlaThrValGlyTyrLeuAsnMet : 394 !..!:!:! !! !!.!:!!..!|||! !:!!:!! CysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 287212 : TGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 287252 vulgar: AmOr15 294 394 . KQ414889.1 286878 287252 + 183 M 37 111 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286879 287252 183 + . gene_id 10 ; sequence AmOr15 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286879 287252 183 + . alignment_id 10 ; Query AmOr15 ; Align 286879 295 111 ; Align 287064 332 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 181 Query range: 20 -> 259 Target range: 262873 -> 263596 21 : LeuLeuGlyLysLeuGlyAlaTrpProAsnArgAlaThrSerSerThrSerPheSerA : 40 |||||| ! !:!!|||||||||||| !||| |||! !:!!!!!.!...!| LeuLeuLysProIleGlyAlaTrpProLeuSerAla---SerIleSerArgMetGluA 262874 : CTGCTGAAACCGATCGGTGCATGGCCACTGTCCGCC---TCGATCTCAAGAATGGAAC : 262928 41 : rgThrArgAsnCysIleLeuIlePheMetCysTyrSerValGlnLeuIleIleLeuIl : 59 ||! !! ! ! !:!!|||||| !!:!:||||||!!!:!! !||| !! !:!!|| rgIleIleTrpPheLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIl 262929 : GAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTAT : 262985 60 : eProGlyLeuLeuHisPhePheLeuLysGluLysAspSerArgLysLysValLysIle : 78 ||||..!:!!||||||.!! !!|||:!!! :!!:!!! !!.!! !|||:!!:!!:!! eProSerIleLeuHisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnVal 262986 : CCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTT : 263042 79 : LeuIleProLeuIleAsnGlyTyrLeuGlnLeuCysArgTyrSerLeuValLeuArgS : 98 ||| !|||||| !.!. !!!:!:!! :!! !!.!|||!!!! !:!!|||! ! LeuGlyProLeuGlyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuH 263043 : CTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTC : 263102 99 : erAlaAsnLysLeuCysHisLeuLeuAsnGluMetLysLysAspTrpMetAsnIleSe : 117 !::!!!. ! :!! !! !:!!.!..!.:!!:!!:!!|||||| ! !:!:!! isSerLysAspIleGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValTh 263103 : ACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGAC : 263159 118 : rGlu<->GluAspArgLeuIlePheArgArgLysAlaSerIleGlyHisArgLeuMet : 135 !..! ||||||!:!! !|||.!.! !!:!!!.|||!.! !|||!.! !:!! rArgLeuGluAspGlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAla 263160 : CAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCA : 263216 136 : SerValValAlaIleIleMetTyrSerAlaGlyLeuGlyTyrArgThrPheIleProL : 155 :!! ! !||||||.!!||| ! !!!::! !:!! !! ! !! ! !!! ! !!! AlaSerCysAlaIlePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaP 263217 : GCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGT : 263276 156 : euSerLysGlyArgIleLeuLeuProAspAsnThrThrIle<->ArgLeuLeuProCy : 173 !!!!!! ! ! !||| ! ! !:!!.!.|||! !||| |||:!!|||||||| heThrThrGlnValIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCy 263277 : TCACTACACAGGTGATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTG : 263333 174 : sProGlyTyrTyrIlePhePheAsnGluGlnIleThrProAsnTyrGluIleValPhe : 192 ||||! !||| ! .!!.!! ! .!.! !.!|||!.. !!|||||| !!.!! sProValTyrLysGluIleIleProValAspThrAsnProThrAsnGluIlePheLeu 263334 : TCCAGTGTACAAAGAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTC : 263390 193 : ThrLeuGlnValIleGlyGlyLeuLeuSerTyrThrIleMetCysGlyThrThrSerM : 212 .!! !||| !!:!:..!|||!!!:!! ! !.!!! !! !|||.!! !.!!| AlaThrGlnPheLeuSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyM 263391 : GCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTA : 263450 213 : etCysAlaMetLeuCysLeuHisAlaThrSerLeuLeuArgIleLeuValLysLysIl : 231 || |||:!!!!!..! !|||||| !.!!! !|||!.!:!:|||:!!... !|| etThrAlaValPheAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIl 263451 : TGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGAT : 263507 232 : eAsnGluLeuThrLysGlnPro<->AspIleAsnGluSerAlaValHisMetLysIle : 249 |!..|||!!!..!!!.||| !! ||| |||:!!!:! ! ! !! :!!||| eThrGluPheValAsnGlnSerArgAspGluAsnLysAsnLeuTyrPheThrGluIle 263508 : CACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATA : 263564 250 : ThrAspIleValArgTyrGlnThrLysIle : 259 !! ||||||..!:!!!!. !!:!:!! GlyValIleValGluHisHisLeuArgVal 263565 : GGCGTGATCGTTGAACATCATCTGAGAGTT : 263596 vulgar: AmOr15 20 259 . KQ414889.1 262873 263596 + 181 M 12 36 G 1 0 M 85 255 G 0 3 M 50 150 G 0 3 M 70 210 G 0 3 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262874 263596 181 + . gene_id 11 ; sequence AmOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262874 263596 . + . KQ414889.1 exonerate:protein2genome:local exon 262874 263596 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 262874 263596 181 + . alignment_id 11 ; Query AmOr15 ; Align 262874 21 36 ; Align 262910 34 255 ; Align 263168 119 150 ; Align 263321 169 210 ; Align 263534 239 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 294 -> 384 Target range: 219328 -> 219671 295 : GluTrpGluAspSerAspAlaThrAlaAlaIleIleTyrLeuLeuLeuGluAlaSerV : 314 ||||||:!!...!:!|||!.!|||::!|||:!:! !|||:!!:!!||| !|||: GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 315 : alPheGlyValThrPheThrMetCysTyrValGlyGlnIleLeuIleAspGlu >>> : 332 !: ||| ...||||||:!!|||:!!|||:!! !!!::!: euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln++ 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAggt... : 219442 333 : > Target Intron 1 >>>> GlyAsnAsnValArgArgMetSerIleThrIleA : 343 73 bp ! ......::: ...|||||| !! !|||! ++CysArgLysIleGlyGluMetSerTyrMetIleG 219443 : ......................agTGtaggaaaattggagaaatgtCGTACATGATCG : 219546 344 : spTrpTyrArgPheProAlaLysGluAlaArgAsnLeuIleLeuValIleIleMetSe : 362 !:|||||||||!!. !!!.!|||:!! !! ! !:!!|||..!||| !||||| luTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaMetSe 219547 : AATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTATGTC : 219603 363 : rSerTyrProValLysLeuThrAlaGlyLysValValAspIleSerLeuSerThrTyr : 381 |!:!! ! !!:!!|||||||||||||||!!.:!!|||!!::!:|||:!!||||||!:! rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPhe 219604 : GAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCACTTTT : 219660 382 : ThrAspIle : 384 ||||||:!: ThrAspVal 219661 : ACCGACGTG : 219671 vulgar: AmOr15 294 384 . KQ414889.1 219328 219671 + 172 M 37 111 5 0 2 I 0 69 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219671 172 + . gene_id 12 ; sequence AmOr15 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219671 172 + . alignment_id 12 ; Query AmOr15 ; Align 219329 295 111 ; Align 219513 332 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 327 -> 381 Target range: 292380 -> 292542 328 : LeuIleAspGluGlyAsnAsnValArgArgMetSerIleThrIleAspTrpTyrArgP : 347 :!!:!: !!:!!|||!:!.!.:!! !!.! ||| ! !! !!!:||||||!.!. ValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnL 292381 : GTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATC : 292438 348 : heProAlaLysGluAlaArgAsnLeuIleLeuValIleIleMetSerSerTyrProVa : 366 !.||| !::!:!!||||||:!!:!!:!!||||||:!! !!!:!!!!.!:!!|||:! euProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIl 292439 : TGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGAT : 292495 367 : lLysLeuThrAlaGlyLysValValAspIleSerLeuSerThrTyr : 381 !||||||||||||||||||:!! !!! !:!!||||||!:!|||!:! eLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPhe 292496 : CAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTT : 292542 vulgar: AmOr15 327 381 . KQ414889.1 292380 292542 + 125 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292381 292542 125 + . gene_id 13 ; sequence AmOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292381 292542 . + . KQ414889.1 exonerate:protein2genome:local exon 292381 292542 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292381 292542 125 + . alignment_id 13 ; Query AmOr15 ; Align 292381 328 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 326 -> 384 Target range: 214848 -> 215022 327 : IleLeuIleAspGluGlyAsnAsnValArgArgMetSerIleThrIleAspTrpTyrA : 346 |||:!!:!!.!.:!! !!!!.!!.||| !!..!:!:||| !! !|||!!:||||||| IleMetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrA 214849 : ATTATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACC : 214906 347 : rgPheProAlaLysGluAlaArgAsnLeuIleLeuValIleIleMetSerSerTyrPr : 365 ||!!.|||!.!!!.:!! !! ! !! !||||||:!!!!: !||||||!:!! ! rgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSe 214907 : GATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATC : 214963 366 : oValLysLeuThrAlaGlyLysValValAspIleSerLeuSerThrTyrThrAspIle : 384 !||||||!!!|||||||||!!.:!!|||!!::!:|||:!!||||||!:!!:!..!:!! rValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214964 : CGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215020 vulgar: AmOr15 326 384 . KQ414889.1 214848 215022 + 115 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214849 215022 115 + . gene_id 14 ; sequence AmOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214849 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214849 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214849 215022 115 + . alignment_id 14 ; Query AmOr15 ; Align 214849 327 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 322 -> 384 Target range: 224472 -> 224658 323 : TyrValGlyGlnIleLeuIleAspGluGlyAsnAsnValArgArgMetSerIleThrI : 342 ||| !! !..!:!!!!!.!! ::: ......::: ::!:!!||| !! !| TyrPheLeuSerLeuPhePheProGlnCysGluLysIleGlyGlnValSerTyrMetI 224473 : TATTTTTTATCGCTATTTTTTCCtcagtgtgaaaaaattggacaAGTGTCGTACATGA : 224530 343 : leAspTrpTyrArgPheProAlaLysGluAlaArgAsnLeuIleLeuValIleIleMe : 361 ||||||||||||||!!. !!!.!!!.:!! !! ! !! !||||||:!!||| || leAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMe 224531 : TCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGAT : 224587 362 : tSerSerTyrProValLysLeuThrAlaGlyLysValValAspIleSerLeuSerThr : 380 ||||!:!! ! !!:!!|||||||||||||||!!.:!!|||!!::!:!!!|||!!!||| tSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThr 224588 : GTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACT : 224644 381 : TyrThrAspIle : 384 !:! !|||:!! PheGlyAspVal 224645 : TTCGGTGACGTA : 224658 vulgar: AmOr15 322 384 . KQ414889.1 224472 224658 + 109 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224473 224658 109 + . gene_id 15 ; sequence AmOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224473 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224473 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224473 224658 109 + . alignment_id 15 ; Query AmOr15 ; Align 224473 323 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 342 -> 384 Target range: 235021 -> 235147 343 : AspTrpTyrArgPheProAlaLysGluAlaArgAsnLeuIleLeuValIleIleMetS : 362 !!:|||||||||!!.||| !||| |||! !..!|||:!!:!!:!!||| !! !| GluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgS 235022 : GAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGT : 235079 363 : erSerTyrProValLysLeuThrAlaGlyLysValValAspIleSerLeuSerThrTy : 381 ||||| !:!!|||:!!|||||||||||| !!:!!.!.!!:|||:!!:!!|||!: erSerMetValIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPh 235080 : CGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATT : 235136 382 : rThrAspIle : 384 ! !|||:!: eGlyAspVal 235137 : TGGCGATGTG : 235147 vulgar: AmOr15 342 384 . KQ414889.1 235021 235147 + 106 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 235022 235147 106 + . gene_id 16 ; sequence AmOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 235022 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 235022 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 235022 235147 106 + . alignment_id 16 ; Query AmOr15 ; Align 235022 343 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 342 -> 384 Target range: 238661 -> 238787 343 : AspTrpTyrArgPheProAlaLysGluAlaArgAsnLeuIleLeuValIleIleMetS : 362 ||||||||| !.!.||| !!:!..! !! !:!!|||||||||:!!|||! ! | AspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgS 238662 : GATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGAT : 238719 363 : erSerTyrProValLysLeuThrAlaGlyLysValValAspIleSerLeuSerThrTy : 381 ||!:! !||||||:!!|||||||||||||||:!! !!!!:||||||! !|||!: erAsnValValValLysValThrAlaGlyLysValLeuHisMetSerLeuTyrThrPh 238720 : CGAACGTGGTCGTTAAAGTCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTT : 238776 382 : rThrAspIle : 384 ! !|||:!! eGlyAspVal 238777 : CGGCGATGTA : 238787 vulgar: AmOr15 342 384 . KQ414889.1 238661 238787 + 101 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238662 238787 101 + . gene_id 17 ; sequence AmOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238662 238787 . + . KQ414889.1 exonerate:protein2genome:local exon 238662 238787 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238662 238787 101 + . alignment_id 17 ; Query AmOr15 ; Align 238662 343 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 564 Query range: 4 -> 250 Target range: 204236 -> 204974 5 : TyrSerLeuLysLeuValTyrProLeuLeuLysIleLeuGlyAlaTrpProLysSerS : 24 |||:!! !:::!!!||| ! |||:!!||| !|||:!!||||||||||||! !! TyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaTrpProIleProV 204237 : TACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGTGGCCGATTCCAG : 204294 25 : erProSerSerValLeuSerThrIleLeuLysCysCysLeuIleSerIleCysTyrLe : 43 ! !|||||| !!!!!!!! !:!!:!!::! ! ! ! !:!! !|||.. alAsnSerSerProPheThrArgLeuValArgArgIleGluHisValValThrTyrPh 204295 : TGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGTAGTCACCtattt : 204351 44 : uIleGlnLeuMetValLeuIleProGlyIleLeuTyrIlePheLeuLysGluAlaAsn : 62 .::: ...::::!!:!!:!!||||||:!!||||||:!:|||||||||||| !||| eLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheLeuLysGluLysAsn 204352 : cctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAGAAC : 204408 63 : LeuGlyGlyLysIleLysMetPheValProHisMetAsnGlyIleThrGlnValSerL : 82 ! ! !::::!:|||!!:.!!! !||| !:!!||| !!! !! !||| !!! !| GlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSerIleGlnPhePheL 204409 : GGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCATACAGTTCTTCA : 204468 83 : ysTyrThrIleLeuLeuArgGlnIleLysGluPheAsnIleIleLeuLysGluValLy : 101 |||||:!!:!!:!!||| !!:!||| ! :!!.!!.!.! ! !|||!!. :!!!: ysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSerLeuAsnThrIleAr 204469 : AGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGTTTGAACACCATCAG : 204525 102 : sArgAspTyrSerLeuAlaThrAspLysAsnMetTrpIlePheThrThrArgAlaTyr : 120 !||||||!::! ! !|||||||||:!!||| !! !|||||| !:!!!:!||| ! gArgAspTrpIleGluAlaThrAspGluAsnArgLeuIlePheArgSerLysAlaLys 204526 : ACGCGACTGGATAGAGGCTACGGATGAAAATCGGTTGATTTTCCGCTCGAAAGCGAAG : 204582 121 : IleGlyHisLysMetMetIleAlaIleAlaIleAlaMetTyrSerSerGlyValGlyT : 140 ||||||!..!:!:!!:!!:!: ! !||| !.!!||||||.!!.!!|||:!! !!| IleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetTyrGlyGlyGlyLeuCysT 204583 : ATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGTACGGCGGTGGTTTGTGTT : 204642 141 : yrArgMetIleLeuProPheLeuLysGlyArgIleLeuLeuProAspAsnThrThrVa : 159 |||||! !|||||||||!!.|||!:!|||! !|||:!! !|||||||||..!|||:! yrArgThrIleLeuProLeuLeuArgGlyThrIleValThrProAspAsnValThrIl 204643 : ACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTAACACCTGATAACGTTACCAT : 204699 160 : lArgLeuLeuProCysProGlyTyrTyrMetPheLeuAsnGluGlnValThrProAsn : 178 !|||! !||||||||||||! !|||::::::|||...||||||||| !:!!|||||| eArgProLeuProCysProValTyrPheValPhePheAsnGluGlnArgSerProAsn 204700 : AAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaacGAGCAACGTTCGCCGAAT : 204756 179 : TyrGluIleIlePheThrIleGlnValLeuGlyGlyPheLeuAsnTyrThrThrLeuC : 198 |||||||||:!!|||! !:!:|||:!!:!!!.!||||||:!!!.!|||.!!..!:!! TyrGluIleValPheIleLeuGlnIleMetAlaGlyPheValThrTyrAlaValIleS 204757 : TACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTGTTACTTACGCTGTTATCA : 204816 199 : ysGlyThrThrGlyIleThrThrMetLeuCysLeuHisMetCysSerLeuLeuGluIl : 217 !!|||||| !|||!!: !.!!:!!!!! !|||||| !||||||:!!|||..!|| erGlyThrCysGlyMetCysAlaLeuPheValLeuHisAlaCysSerMetLeuArgIl 204817 : GCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGCGTGCAGCATGCTGAGGAT : 204873 218 : eLeuIleAsnLysMetAsnAspLeuThrCysGlnSerAspGluCysGluIleIleVal : 236 ||||:!:||||||||||||! |||..! !:!!:!!||| ! !|||! !:!!||| eLeuValAsnLysMetAsnAlaLeuValAspLysAlaAspMetThrGluThrLeuVal 204874 : TTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCGGACATGACCGAGACACTTGTG : 204930 237 : ArgLysLysLeuAlaAspIleValGluTyrGlnMetLysIle : 250 !.!!:!|||:!!|||||||||||||||||||||! !|||||| HisArgLysIleAlaAspIleValGluTyrGlnThrLysIle 204931 : CACAGGAAGATCGCTGATATTGTTGAATATCAGACGAAGATA : 204974 vulgar: AmOr13 4 250 . KQ414889.1 204236 204974 + 564 M 246 738 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204237 204974 564 + . gene_id 1 ; sequence AmOr13 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204237 204974 . + . KQ414889.1 exonerate:protein2genome:local exon 204237 204974 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 204237 204974 564 + . alignment_id 1 ; Query AmOr13 ; Align 204237 5 738 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 301 Query range: 285 -> 389 Target range: 206050 -> 207604 286 : GluTrpGluAsnSerAsnAlaAlaAlaLeuIleValTyrPheIleLeuGluPheLeuC : 305 ||||||||||||!:!|||.!!.!!|||:!!|||||||||.!!! |||:!!.!.! !| GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 306 : ysIlePheCysThrLeuThrIleCysTyrIleGlyGlnLeuLeuIleAspGlu >>> : 323 ||! !||||||..!!!!! !:!!|||||||||||||||||||||||||||:!! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 324 : > Target Intron 1 >>>> SerAspLysValArgGlnIleSerValThrLeuA : 334 81 bp !:! !! ||| !! !! !||| !|||:!!: ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 335 : spTrpTyrArgLeuProValAsnGluAlaArgGlyLeuIleLeuValIleIleMetSe : 353 !!||||||||||||||| !!...!.||||||..!:!!||||||:!!||| !||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 354 : rAsnTyrProIleLysValThrAlaGlyLysIleValAspIleSerLeuIleThrPhe : 372 ||||||||||||||||:!!||||||||||||!!: !!!!:!!:|||||| !!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 373 : ThrAsp >>>> Target Intron 2 >>>> IleValLysThrSerValGlyTy : 382 |||||| 1161 bp :!!:!!|||..!:!!:!!||||| ThrAsp++ ++ValMetLysValAlaMetGlyTy 206391 : ACCGATgt.........................agGTAATGAAGGTGGCGATGGGATA : 207581 383 : rLeuAsnIleLeuArgThrVal : 389 |!!!|||||||||||| !||| rPheAsnIleLeuArgGluVal 207582 : CTTCAACATACTCCGTGAAGTC : 207604 vulgar: AmOr13 285 389 . KQ414889.1 206050 207604 + 301 M 37 111 5 0 2 I 0 77 3 0 2 M 52 156 5 0 2 I 0 1157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 207604 301 + . gene_id 2 ; sequence AmOr13 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206398 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206398 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206399 206400 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206399 207559 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 207558 207559 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 207560 207604 . + . KQ414889.1 exonerate:protein2genome:local exon 207560 207604 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 207604 301 + . alignment_id 2 ; Query AmOr13 ; Align 206051 286 111 ; Align 206243 323 156 ; Align 207560 375 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 240 Query range: 4 -> 251 Target range: 262849 -> 263599 5 : TyrSerLeuLysLeuValTyrProLeuLeuLysIleLeuGlyAlaTrpProLysSerS : 24 |||||||||:!!:!! ! !||||||||| :!!|||||||||||| !|||: TyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerA 262850 : TACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCG : 262907 25 : erProSerSerValLeuSerThrIleLeuLysCysCysLeuIleSerIleCysTyrLe : 43 !! !!! !||| !:!!..! !|||:!! !! ! !|||||| !:!!||||||! laSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCy 262908 : CCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTG : 262964 44 : uIleGlnLeuMetValLeuIleProGlyIleLeuTyrIlePheLeuLysGluAlaAsn : 62 !:!! !||| ..!:!!||||||..!||||||:!!||| !!|||:!!! ! !||| sLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsn 262965 : TCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAAT : 263021 63 : LeuGlyGlyLysIleLysMetPheValProHisMetAsnGlyIleThrGlnValSerL : 82 !!! ! !|||:!::!!:!:.!!! !|||! ! .!. !!.!!..! :!!! !! PheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleA 263022 : TTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCA : 263081 83 : ysTyrThrIleLeuLeuArgGlnIleLysGluPheAsnIleIleLeuLysGluValLy : 101 !.|||||| ||||||! !!!.! !|||!!:.!..!. ! !:!!:!!.!.|||:! snTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGl 263082 : ATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCA : 263138 102 : sArgAspTyrSerLeuAlaThrAsp<->LysAsnMetTrpIlePheThrThrArgAla : 119 !..!|||!::!!!:!!!.!||| :!!:!!... ! |||.!. !! !!.!||| nGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAla 263139 : GGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCG : 263195 120 : TyrIleGlyHisLysMetMetIleAlaIleAlaIleAlaMetTyrSerSerGlyValG : 139 ! !|||!.! ! :!! !:!! !|||||| !||| ! !!!||| !:!! LysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetC 263196 : AAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGT : 263255 140 : lyTyrArgMetIleLeuProPheLeuLysGlyArgIleLeuLeuProAspAsnThrTh : 158 !! ! !!:!::!! ! !!||| !! ! ! !||| ! ! !:!!.!.|||! ysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrAr 263256 : GCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAG : 263312 159 : rVal<->ArgLeuLeuProCysProGlyTyrTyrMetPheLeuAsnGluGlnValThr : 176 !:!! |||:!!||||||||||||! !||| ! !.!!:!! ! .!...!!.! gIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThrAsn 263313 : AATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAAT : 263369 177 : ProAsnTyrGluIleIlePheThrIleGlnValLeuGlyGlyPheLeuAsnTyrThrT : 196 |||!.. !!||||||.!!.!!.!!! ||| !!|||..!||||||:!! ! !.!!| ProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaT 263370 : CCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGA : 263429 197 : hrLeuCysGlyThrThrGlyIleThrThrMetLeuCysLeuHisMetCysSerLeuLe : 215 || ! !|||.!! !|||!!:|||.!!:!!!!!..! !||| |||.!!! !|| hrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLe 263430 : CAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTT : 263486 216 : uGluIleLeuIleAsnLysMetAsnAspLeuThrCysGlnSer<->AspGluCysGlu : 233 |.!.:!:|||!!:::! !!!:!..!!:!!!..! !|||||| |||||| !:!! uAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLys 263487 : GAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAG : 263543 234 : IleIleValArgLysLysLeuAlaAspIleValGluTyrGlnMetLysIleIle : 251 ! !:!! ! !! :!!:!!!.!! |||||||||:!!!!.:!!!:!:!!:!: AsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeu 263544 : AATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTG : 263599 vulgar: AmOr13 4 251 . KQ414889.1 262849 263599 + 240 M 105 315 G 0 3 M 50 150 G 0 3 M 70 210 G 0 3 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262850 263599 240 + . gene_id 3 ; sequence AmOr13 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262850 263599 . + . KQ414889.1 exonerate:protein2genome:local exon 262850 263599 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262850 263599 240 + . alignment_id 3 ; Query AmOr13 ; Align 262850 5 315 ; Align 263168 110 150 ; Align 263321 160 210 ; Align 263534 230 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 228 Query range: 285 -> 389 Target range: 224323 -> 224767 286 : GluTrpGluAsnSerAsnAlaAlaAlaLeuIleValTyrPheIleLeuGluPheLeuC : 305 ||||||...:::|||:!! !.!!::! !:!:..!|||||||||||| .!.! GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 306 : ysIlePheCysThrLeuThrIleCysTyrIleGlyGlnLeuLeuIleAspGlu >>> : 323 ||| ... ...||||||||||||:!!|||:!! !!!:::: euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln++ 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggt... : 224437 324 : > Target Intron 1 >>>> SerAspLysValArgGlnIleSerValThrLeuA : 334 65 bp :::|||::: |||:!:||| !! !:!!| ++CysGluLysIleGlyGlnValSerTyrMetIleA 224438 : ......................agtgtgaaaaaattggacaAGTGTCGTACATGATCG : 224533 335 : spTrpTyrArgLeuProValAsnGluAlaArgGlyLeuIleLeuValIleIleMetSe : 353 |||||||||||||| !!! !|||:!! !! ! !!! !||||||:!!||| ||||| spTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 224534 : ACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGATGTC : 224590 354 : rAsnTyrProIleLysValThrAlaGlyLysIleValAspIleSerLeuIleThrPhe : 372 ||||! ! !!||||||:!!|||||||||!!.!!:|||!!::!:!!!|||! !|||||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThrPhe 224591 : CAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACTTTC : 224647 373 : ThrAsp >>>> Target Intron 2 >>>> IleValLysThrSerValGlyTy : 382 !||| 67 bp :!!|||||||||:!!|||!.!!: GlyAsp++ ++ValValLysThrAlaValAlaPh 224648 : GGTGACgt.........................agGTTGTCAAGACAGCTGTCGCATT : 224744 383 : rLeuAsnIleLeuArgThrVal : 389 !||||||:!:|||||||||:!! eLeuAsnValLeuArgThrLeu 224745 : TTTGAACGTGTTACGAACATTG : 224767 vulgar: AmOr13 285 389 . KQ414889.1 224323 224767 + 228 M 37 111 5 0 2 I 0 61 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224767 228 + . gene_id 4 ; sequence AmOr13 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224655 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224655 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224656 224657 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224656 224722 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 224721 224722 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 224723 224767 . + . KQ414889.1 exonerate:protein2genome:local exon 224723 224767 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224767 228 + . alignment_id 4 ; Query AmOr13 ; Align 224324 286 111 ; Align 224500 323 156 ; Align 224723 375 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 207 Query range: 285 -> 389 Target range: 291368 -> 293245 286 : GluTrpGluAsnSerAsnAlaAlaAlaLeuIleValTyrPheIleLeuGluPheLeuC : 305 |||||||||!:!|||:!!:!! !!.!:!!:!!..!||| !!! !||| !! !! GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 306 : ysIlePheCysThrLeuThrIleCysTyrIleGlyGlnLeuLeuIleAspGlu >>> : 323 !! !||| !! !|||! !.!!||||||:!!|||:!!||||||:!!! :!! heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln++ 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAGgt... : 291482 324 : > Target Intron 1 >>>> SerAspLysValArgGlnIleSerValThrLeuA : 334 913 bp .!!..!:!!:!! !!!. !||| ! ! !! ++GlySerGluIleAlaHisAlaSerTyrAspThrG 291483 : ......................agGGTAGTGAAATCGCGCACGCTTCCTACGATACAG : 292426 335 : spTrpTyrArgLeuProValAsnGluAlaArgGlyLeuIleLeuValIleIleMetSe : 353 !:||||||!.!|||||| !...:!!||||||! !:!!:!!||||||:!! !!!:!! luTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIleTh 292427 : AATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAAC : 292483 354 : rAsnTyrProIleLysValThrAlaGlyLysIleValAspIleSerLeuIleThrPhe : 372 !!!.:!!|||||||||:!!||||||||||||||| !!! !:!!||||||! !|||||| rLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPhe 292484 : GAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTT : 292540 373 : ThrAsp >>>> Target Intron 2 >>>> IleValLysThrSerValGlyTy : 382 !! ! 652 bp :!::!!|||:!!||||||! !|| GlyAla++ ++ValLeuLysSerSerValValTy 292541 : GGCGCTgt.........................agGTGCTGAAATCGTCGGTAGTTTA : 293222 383 : rLeuAsnIleLeuArgThrVal : 389 |:!!|||!!:|||||||||||| rMetAsnMetLeuArgThrVal 293223 : CATGAACATGCTACGAACCGTC : 293245 vulgar: AmOr13 285 389 . KQ414889.1 291368 293245 + 207 M 37 111 5 0 2 I 0 909 3 0 2 M 52 156 5 0 2 I 0 648 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 293245 207 + . gene_id 5 ; sequence AmOr13 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292548 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292548 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 292549 292550 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 292549 293200 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 293199 293200 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 293201 293245 . + . KQ414889.1 exonerate:protein2genome:local exon 293201 293245 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 293245 207 + . alignment_id 5 ; Query AmOr13 ; Align 291369 286 111 ; Align 292393 323 156 ; Align 293201 375 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 206 Query range: 277 -> 388 Target range: 214605 -> 215130 278 : ValIleGlyTyrCysLeuIleThrGluTrpGluAsnSerAsnAlaAlaAlaLeuIleV : 297 :::::: ::: :::::: ||||||.!.:::!:!||| !.!!.!! !:!!. IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 298 : alTyrPheIleLeuGluPheLeuCysIlePheCysThrLeuThrIleCysTyrIleGl : 316 .!||| ! :!:||| ! .!!! ! ||| ... ...||||||||||| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 317 : yGlnLeuLeuIleAspGlu >>>> Target Intron 1 >>>> SerAspLysV : 326 |:!!|||:!! !!!::!! 123 bp !!! ! |||| yGluLeuValSerGluGln++ ++CysLysLysV 214721 : CGAGCTTGTGTCTGAACAGgt.........................agTGCAAAAAGG : 214873 327 : alArgGlnIleSerValThrLeuAspTrpTyrArgLeuProValAsnGluAlaArgGl : 345 || !!:!!:!!||| !! !:!!!!:|||||||||||||||! !|||:!! !! ! ! alGlyGluValSerTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCy 214874 : TCGGAGAAGTATCGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTG : 214930 346 : yLeuIleLeuValIleIleMetSerAsnTyrProIleLysValThrAlaGlyLysIle : 364 !! !||||||:!!!!: !|||||||||! !!:!!||| !!|||||||||!!.!!: sCysIleLeuIleMetAlaMetSerAsnSerSerValLysPheThrAlaGlyAsnMet 214931 : TTGCATTTTGATCATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATG : 214987 365 : ValAspIleSerLeuIleThrPheThrAsp >>>> Target Intron 2 >>>> : 375 |||!!::!:|||:!!! !||||||!:!..! 69 bp ValGluLeuSerIleSerThrPheSerSer++ + 214988 : GTAGAACTGTCTATCAGCACTTTCAGCAGTgt.........................a : 215087 376 : IleValLysThrSerValGlyTyrLeuAsnIleLeuArgThr : 388 :!!|||::!|||||||||!.!!:!|||||| ||||||||| +ValValArgThrSerValAlaPheLeuAsnAlaLeuArgThr 215088 : gGTTGTTCGAACATCGGTTGCCTTCTTAAACGCGTTACgaaca : 215130 vulgar: AmOr13 277 388 . KQ414889.1 214605 215130 + 206 M 45 135 5 0 2 I 0 119 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 215130 206 + . gene_id 6 ; sequence AmOr13 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215019 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215019 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 215020 215021 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 215020 215088 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 215087 215088 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 215089 215130 . + . KQ414889.1 exonerate:protein2genome:local exon 215089 215130 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 215130 206 + . alignment_id 6 ; Query AmOr13 ; Align 214606 278 135 ; Align 214864 323 156 ; Align 215089 375 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 4 -> 251 Target range: 278576 -> 279338 5 : TyrSerLeuLysLeuValTyrProLeuLeuLysIleLeuGlyAlaTrpProLysSerS : 24 ||||||:!!:!!:!! ! ! !!!!|||||| :!!|||!.!|||||| ||| TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 25 : erProSerSerValLeuSerThrIleLeuLysCysCysLeuIleSerIle<->CysTy : 42 ! ! !!!!..!|||..!! !||| !... !||| ! !||| |||!: euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 43 : rLeuIleGlnLeuMetValLeuIleProGlyIleLeuTyrIlePheLeuLysGluAla : 61 !|||||| !!!:!::!!:!! !!.!:!:! ! :!:.!! !||| !.! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 62 : AsnLeuGlyGlyLysIleLysMetPheValProHisMetAsnGlyIleThrGlnValS : 81 :!!|||! ! !||||||||||||.!!! !|||! ! ! !!! ! ! !..!! AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 82 : erLysTyrThrIleLeuLeuArgGlnIleLysGluPheAsnIleIleLeuLysGluVa : 100 !|||||| !||||||:!! !!:: ! :!!.!!..!! ! !:!!!!.!!::! leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 101 : lLysArgAspTyrSerLeuAla<-><-><-><->ThrAspLysAsnMetTrpIlePhe : 115 !:::! !|||!::||||||.!! ::::::... |||.!. eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 116 : ThrThrArgAlaTyrIleGlyHisLysMetMetIleAlaIleAlaIleAlaMetTyrS : 135 ! ! !!!!||| ||||||!.....:!! !||| !! !||| ! !||||||| ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 136 : erSerGlyValGlyTyrArgMetIleLeuProPheLeuLysGlyArgIleLeuLeuPr : 154 ||.!!|||||| !|||! ! :!::!!|||!!.!!! !! !|||! !:!! erGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIl 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCAT : 279039 155 : oAspAsnThrThrValArgLeuLeuProCysProGlyTyrTyrMetPheLeuAsnGlu : 173 !|||||| !|||||||||! !! ! !!! !||| !||| ! .!!|||:!! ! eAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 279040 : CGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCG : 279096 174 : GlnValThrProAsnTyrGluIleIlePheThrIleGlnValLeuGlyGlyPheLeuA : 193 !::..!!:!|||:::!:!||||||:!: !!!:||| !|||!.!!.!|||:!! ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValL 279097 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTT : 279156 194 : snTyrThrThrLeuCysGlyThrThrGlyIleThrThrMetLeuCysLeuHisMetCy : 212 |||:!!..! ! !|||.!! !.!!:!:! !.!!:!!!!! !:!!|||:!:|| euTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCy 279157 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTG : 279213 213 : sSerLeuLeuGluIleLeuIleAsnLysMetAsnAspLeuThr<-><->CysGlnSer : 229 |.!!! !!!!..!||||||:!:!..|||:!!:!! ! |||! ! :!!.!! sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLysGly 279214 : TGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGG : 279270 230 : AspGluCysGluIleIleValArgLysLysLeuAlaAspIleValGluTyrGlnMetL : 249 :!! !! !! !! !..!:!!::!|||!.!||||||:!!|||:!!!!.:!!| ArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuL 279271 : AGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGA : 279330 250 : ysIleIle : 251 |||||:!: ysIleLeu 279331 : AGATACTG : 279338 vulgar: AmOr13 4 251 . KQ414889.1 278576 279338 + 204 M 36 108 G 0 3 M 67 201 G 0 12 M 119 357 G 0 6 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 279338 204 + . gene_id 7 ; sequence AmOr13 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278577 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279338 . + . insertions 21 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278577 279338 204 + . alignment_id 7 ; Query AmOr13 ; Align 278577 5 108 ; Align 278688 41 201 ; Align 278901 108 357 ; Align 279264 227 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 190 Query range: 285 -> 387 Target range: 277371 -> 277833 286 : GluTrpGluAsnSerAsnAlaAlaAlaLeuIleValTyrPheIleLeuGluPheLeuC : 305 ||||||...:!!|||:!!!.! !.!!:!!! !..!:!!|||!!::!! .!.! ! GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 306 : ysIlePheCysThrLeuThrIleCysTyrIleGlyGlnLeuLeuIleAspGlu >>> : 323 ||| ...|||:!!||||||||||||:!!:!!|||! !!!::!! etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 324 : > Target Intron 1 >>>> SerAspLysValArgGlnIleSerValThrLeuA : 334 72 bp !!! ! |||||| !!:!!:!: ! !! ! !: ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 335 : spTrpTyrArgLeuProValAsnGluAlaArgGlyLeuIleLeuValIleIleMetSe : 353 !!|||||| !||||||! !!!.!!: !! !..!|||:!!|||:!!||| !! || snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 354 : rAsnTyrProIleLysValThrAlaGlyLysIleValAspIleSerLeuIleThrPhe : 372 |!:! ||||||:::||||||||||||::::::...:::|||:!! !|||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 373 : ThrAsp >>>> Target Intron 2 >>>> IleValLysThrSerValGlyTy : 382 !||| 84 bp :!!:!!||||||!!! !!...|| GlyAsp++ ++ValIleLysThrThrPheAlaTy 277703 : GGCGATgt.........................agGTAATAAAAACCACTTTCgcgta : 277816 383 : rLeuAsnIleLeuArg : 387 |||||||||||||||| rLeuAsnIleLeuArg 277817 : tttaaatattctacgC : 277833 vulgar: AmOr13 285 387 . KQ414889.1 277371 277833 + 190 M 37 111 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277833 190 + . gene_id 8 ; sequence AmOr13 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277833 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277833 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277833 190 + . alignment_id 8 ; Query AmOr13 ; Align 277372 286 111 ; Align 277555 323 156 ; Align 277795 375 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 285 -> 387 Target range: 272836 -> 273293 286 : GluTrpGluAsnSerAsnAlaAlaAlaLeuIleValTyrPheIleLeuGluPheLeuC : 305 |||||| :!! !:!! ! !::!|||! !..!||||||!!::!! .!.! ! GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 306 : ysIlePheCysThrLeuThrIleCysTyrIleGlyGlnLeuLeuIleAspGlu >>> : 323 ||| ... ::!||||||||||||:!!:!!|||! !!:..! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 324 : > Target Intron 1 >>>> SerAspLysValArgGlnIleSerValThrLeuA : 334 70 bp |||::: :!!:!! ! !! ! !: ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 335 : spTrpTyrArgLeuProValAsnGluAlaArgGlyLeuIleLeuValIleIleMetSe : 353 !!|||||| !||||||! !!!.!!: !! !! !|||||||||:!!||| !! !! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 354 : rAsnTyrProIleLysValThrAlaGlyLysIleValAspIleSerLeuIleThrPhe : 372 !!:! ! !||||||:!!|||||||||!:!|||||| !!!:|||:!! !|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 373 : ThrAsp >>>> Target Intron 2 >>>> IleValLysThrSerValGlyTy : 382 !||| 81 bp ::::!!|||!:!:!! !!!.!|| GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 383 : rLeuAsnIleLeuArg : 387 |||||||!!:|||||| rLeuAsnMetLeuArg 273277 : CTTAAATATGCTACGA : 273293 vulgar: AmOr13 285 387 . KQ414889.1 272836 273293 + 157 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273293 157 + . gene_id 9 ; sequence AmOr13 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273293 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273293 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273293 157 + . alignment_id 9 ; Query AmOr13 ; Align 272837 286 111 ; Align 273018 323 156 ; Align 273255 375 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 285 -> 380 Target range: 244441 -> 244832 286 : GluTrpGluAsnSerAsnAlaAlaAlaLeuIleValTyrPheIleLeuGluPheLeuC : 305 ||||||! !.!.|||:!!||| ! !||||||..!||||||||| ! !! ! GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheIleAlaLeuValAlaI 244442 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTATAGCACTCGTTGCTA : 244499 306 : ysIlePheCysThrLeuThrIleCysTyrIleGlyGlnLeuLeuIleAspGlu >>> : 323 !:!!! ! !|||!!!! !:!!|||||||||.!!.!. !|||! !!!::!! leValSerAsnThrPheIleLeuCysTyrIleSerAspArgLeuThrGluGln++ 244500 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGACAGGCTGACAGAACAGgt... : 244555 324 : > Target Intron 1 >>>> SerAspLysValArgGlnIleSerValThrLeuA : 334 106 bp !!! |||||| !!:!!:!: ! !! ! !| ++CysLeuLysValGlyGluValValTyrMetThrA 244556 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 244692 335 : spTrpTyrArgLeuProValAsnGluAlaArgGlyLeuIleLeuValIleIleMetSe : 353 |||||||| !|||||| !!....! !! !! !|||||||||:!!|||! ! || spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSe 244693 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATC : 244749 354 : rAsnTyrProIleLysValThrAlaGlyLysIleValAspIleSerLeuIleThrPhe : 372 |||| !:!!:!!:!!||||||||||||:!!:!! !!!!:|||||| !|||||| rAsnMetValValGluIleThrAlaGlyLysValLeuHisMetSerLeuTyrThrPhe 244750 : GAACATGGTCGTTGAAATCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTC : 244806 373 : ThrAspIleValLysThrSerVal : 380 !|||:!! !:!!|||!.!:!! GlyAspValSerGluThrLysLeu 244807 : GGCGATGTAAGTGAAACTAAACTT : 244832 vulgar: AmOr13 285 380 . KQ414889.1 244441 244832 + 154 M 37 111 5 0 2 I 0 102 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244442 244832 154 + . gene_id 10 ; sequence AmOr13 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244442 244552 . + . KQ414889.1 exonerate:protein2genome:local exon 244442 244552 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244553 244554 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244553 244658 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244657 244658 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244659 244832 . + . KQ414889.1 exonerate:protein2genome:local exon 244659 244832 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244442 244832 154 + . alignment_id 10 ; Query AmOr13 ; Align 244442 286 111 ; Align 244659 323 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 324 -> 385 Target range: 280282 -> 280465 325 : LysValArgGlnIleSerValThrLeuAspTrpTyrArgLeuProValAsnGluAlaA : 344 |||||| !! ! !!!! !! !:!!||||||||||||||||||! !!!.:!!|||! LysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaG 280283 : AAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCAC : 280340 345 : rgGlyLeuIleLeuValIleIleMetSerAsnTyrProIleLysValThrAlaGlyLy : 363 :!||||||||||||:!!.!! !:!!||||||! ! !!||||||:!!||||||||||| lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 280341 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 280397 364 : sIleValAspIleSerLeuIleThrPheThrAspIleValLysThrSerValGlyTyr : 382 ||||:!!|||:!!||||||! !!:!||| !..!:!: !! ! !!:!:!!..!||| sIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 280398 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 280454 383 : LeuAsnIle : 385 ! !:!!:!: TyrHisLeu 280455 : TATCATTTG : 280465 vulgar: AmOr13 324 385 . KQ414889.1 280282 280465 + 140 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280283 280465 140 + . gene_id 11 ; sequence AmOr13 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280283 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280283 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280283 280465 140 + . alignment_id 11 ; Query AmOr13 ; Align 280283 325 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 324 -> 385 Target range: 287069 -> 287252 325 : LysValArgGlnIleSerValThrLeuAspTrpTyrArgLeuProValAsnGluAlaA : 344 |||||| !! ! !!!! !! !:!!||||||||||||||||||! !!!. !|||! LysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaG 287070 : AAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTC : 287127 345 : rgGlyLeuIleLeuValIleIleMetSerAsnTyrProIleLysValThrAlaGlyLy : 363 :!||||||||||||:!!.!! !:!!||||||! ! !!||||||:!!||||||||||| lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 287128 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 287184 364 : sIleValAspIleSerLeuIleThrPheThrAspIleValLysThrSerValGlyTyr : 382 ||||:!!|||:!!||||||! !!:!||| !..!:!: !! ! !!:!:!!..!||| sIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 287185 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 287241 383 : LeuAsnIle : 385 ! !:!!:!: TyrHisLeu 287242 : TATCATTTG : 287252 vulgar: AmOr13 324 385 . KQ414889.1 287069 287252 + 138 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287070 287252 138 + . gene_id 12 ; sequence AmOr13 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287070 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287070 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287070 287252 138 + . alignment_id 12 ; Query AmOr13 ; Align 287070 325 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 321 -> 387 Target range: 264723 -> 265001 322 : GluSerAspLysValArgGlnIleSerValThrLeuAspTrpTyrArgLeuProValA : 341 :!!!!! ! |||||| !!:!!:!: ! !! !! !:!!|||||| !|||||| !! GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 342 : snGluAlaArgGlyLeuIleLeuValIleIleMetSerAsnTyrProIleLysValTh : 360 !.!!: !! !! !|||||||||:!!|||:!!! |||!:! !.!!||| !!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 361 : rAlaGlyLysIleValAspIleSerLeuIleThrPheThrAsp >>>> Target I : 375 |||||||||||||:!! !!!!:|||:!! !||||||!:!||| 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 376 : ntron 1 >>>> IleValLysThrSerValGlyTyrLeuAsnIleLeuArg : 387 bp :!!:!!|||:!!||| !! !|||||||||:!!|||||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArg 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGC : 265001 vulgar: AmOr13 321 387 . KQ414889.1 264723 265001 + 133 M 53 159 5 0 2 I 0 76 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265001 133 + . gene_id 13 ; sequence AmOr13 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265001 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265001 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265001 133 + . alignment_id 13 ; Query AmOr13 ; Align 264724 322 159 ; Align 264963 375 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 320 -> 375 Target range: 301871 -> 302036 321 : AspGluSerAspLysValArgGlnIleSerValThrLeuAspTrpTyrArgLeuProV : 340 ||| !!!!!..!:!!:!! !!..! !||| ! !:!!|||||||||!.!||||||! Asp***CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProA 301872 : GATTAGTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAG : 301929 341 : alAsnGluAlaArgGlyLeuIleLeuValIleIleMetSerAsnTyrProIleLysVa : 359 .!!!...!||| !! !|||||||||:!!! !:!:!!:|||.!.|||||| |||:! laLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLe 301930 : CGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACT : 301986 360 : lThrAlaGlyLysIleValAspIleSerLeuIleThrPheThrAspIle : 375 !|||||||||||||||:!!|||:!!||||||! !||||||!:!..!:!! uThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301987 : TACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: AmOr13 320 375 . KQ414889.1 301871 302036 + 133 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301872 302036 133 + . gene_id 14 ; sequence AmOr13 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301872 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301872 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301872 302036 133 + . alignment_id 14 ; Query AmOr13 ; Align 301872 321 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 332 -> 375 Target range: 305654 -> 305783 333 : LeuAspTrpTyrArgLeuProValAsnGluAlaArgGlyLeuIleLeuValIleIleM : 352 :!!..!||||||!.!||||||..!!!. ! !!.!||||||||||||:!!||| !| IleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleLeuIleIleAlaM 305655 : ATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTTTAATCATTGCCA : 305712 353 : etSerAsnTyrProIleLysValThrAlaGlyLysIleValAspIleSerLeuIleTh : 371 |||||!:! !!||| !|||:!!!:!|||||||||:!!||||||:!!|||||| !|| etSerSerAsnProAlaLysIleSerAlaGlyLysValValAspLeuSerLeuSerTh 305713 : TGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTATCTTTATCCAC : 305769 372 : rPheThrAspIle : 375 |||| !:!!:!: rPheGlyAsnVal 305770 : ATTTGGAAACGTG : 305783 vulgar: AmOr13 332 375 . KQ414889.1 305654 305783 + 125 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305655 305783 125 + . gene_id 15 ; sequence AmOr13 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305655 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305655 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305655 305783 125 + . alignment_id 15 ; Query AmOr13 ; Align 305655 333 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 324 -> 380 Target range: 238634 -> 238802 325 : LysValArgGlnIleSerValThrLeuAspTrpTyrArgLeuProValAsnGluAlaA : 344 |||||| !!:!!:!: ! !! ! !||||||||| !|||||| !!....! !! LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 238635 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 238692 345 : rgGlyLeuIleLeuValIleIleMetSerAsnTyrProIleLysValThrAlaGlyLy : 363 !! !|||||||||:!!|||! ! |||||| !:!!||||||||||||||||| euAspLeuIleLeuIleIleLysArgSerAsnValValValLysValThrAlaGlyLy 238693 : TCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCACCGCTGGAAA : 238749 364 : sIleValAspIleSerLeuIleThrPheThrAspIleValLysThrSerVal : 380 |:!!:!! !!!!:|||||| !|||||| !|||:!! !:!!|||!:!:!! sValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeu 238750 : AGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTT : 238802 vulgar: AmOr13 324 380 . KQ414889.1 238634 238802 + 123 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238635 238802 123 + . gene_id 16 ; sequence AmOr13 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238635 238802 . + . KQ414889.1 exonerate:protein2genome:local exon 238635 238802 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238635 238802 123 + . alignment_id 16 ; Query AmOr13 ; Align 238635 325 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 324 -> 380 Target range: 254280 -> 254448 325 : LysValArgGlnIleSerValThrLeuAspTrpTyrArgLeuProValAsnGluAlaA : 344 |||||| !!:!!:!: ! !! ! !||||||||| !|||||| !!....! !! LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 254281 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 254338 345 : rgGlyLeuIleLeuValIleIleMetSerAsnTyrProIleLysValThrAlaGlyLy : 363 !! !|||||||||:!!|||! ! |||||| !:!!:!!:!!||||||||||| euAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLy 254339 : TCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaa : 254395 364 : sIleValAspIleSerLeuIleThrPheThrAspIleValLysThrSerVal : 380 |||| :::|||||| !|||||| !|||:!! !:!!|||!:!:!! sIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeu 254396 : aatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTT : 254448 vulgar: AmOr13 324 380 . KQ414889.1 254280 254448 + 119 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254281 254448 119 + . gene_id 17 ; sequence AmOr13 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254281 254448 . + . KQ414889.1 exonerate:protein2genome:local exon 254281 254448 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254281 254448 119 + . alignment_id 17 ; Query AmOr13 ; Align 254281 325 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 324 -> 375 Target range: 219518 -> 219671 325 : LysValArgGlnIleSerValThrLeuAspTrpTyrArgLeuProValAsnGluAlaA : 344 |||::: ::::::||| !! !:!!!!:|||||||||||| !!! !!!.:!! !! LysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysLysL 219519 : aaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAAAGC : 219576 345 : rgGlyLeuIleLeuValIleIleMetSerAsnTyrProIleLysValThrAlaGlyLy : 363 ! !! !:!!|||..!||| !|||||||||! ! !!||||||:!!|||||||||!! euTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAs 219577 : TCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGGAAA : 219633 364 : sIleValAspIleSerLeuIleThrPheThrAspIle : 375 .!!:|||!!::!:|||:!!! !||||||||||||:!: nMetValGluLeuSerIleSerThrPheThrAspVal 219634 : TATGGTCGAATTGTCTATCAGCACTTTTACCGACGTG : 219671 vulgar: AmOr13 324 375 . KQ414889.1 219518 219671 + 117 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219519 219671 117 + . gene_id 18 ; sequence AmOr13 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219519 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219519 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219519 219671 117 + . alignment_id 18 ; Query AmOr13 ; Align 219519 325 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 320 -> 375 Target range: 234982 -> 235147 321 : AspGluSerAspLysValArgGlnIleSerValThrLeuAspTrpTyrArgLeuProV : 340 .!.:!!!!! !|||||| !!:!!! ! ! !! ! !!!:||||||||||||||| GlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProH 234983 : CAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTC : 235040 341 : alAsnGluAlaArgGlyLeuIleLeuValIleIleMetSerAsnTyrProIleLysVa : 359 !!!. |||! !||||||:!!:!!:!!||| !! !|||!:! !||||||:! isLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIl 235041 : ATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAAT : 235097 360 : lThrAlaGlyLysIleValAspIleSerLeuIleThrPheThrAspIle : 375 !||||||||||||.!!:!!.!.!!:|||:!! !|||||| !|||:!: eThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235098 : CACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: AmOr13 320 375 . KQ414889.1 234982 235147 + 112 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234983 235147 112 + . gene_id 19 ; sequence AmOr13 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234983 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234983 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234983 235147 112 + . alignment_id 19 ; Query AmOr13 ; Align 234983 321 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 317 -> 378 Target range: 211758 -> 211941 318 : LeuLeuIleAspGluSerAspLysValArgGlnIleSerValThrLeuAspTrpTyrA : 337 |||:!!.!! :!!!!!! |||||| !!:!!! ||| !! !:!!|||||||||| LeuIlePhe***GlnThrValLysValGlyGluLysSerTyrMetIleAspTrpTyrA 211759 : CTCATATTTTGACAGACAGTAAAAGTTGGAGAAAAGTCTTACATGATCGACTGGTATC : 211816 338 : rgLeuProValAsnGluAlaArgGlyLeuIleLeuValIleIleMetSerAsnTyrPr : 356 ||:!!|||! !!!.:!!!.! !! !:!! !|||:!!||| !||||||:!!! ! rgMetProGlyLysLysGlyLeuValValProLeuMetIleSerMetSerHisSerTh 211817 : GAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGATGATCTCCATGTCACATTCGAC : 211873 357 : oIleLysValThrAlaGlyLysIleValAspIleSerLeuIleThrPheThrAspIle : 375 !! !|||:!!|||||||||!!.:!!:!!! !:!!|||:!!! !!:!||| !|||:!! rThrLysIleThrAlaGlyAsnLeuIleValLeuSerIleSerSerPheGlyAspVal 211874 : CACCAAAATCACCGCTGGCAATCTCATCGTTCTTTCAATCAGTAGTTTCGGTGACGTA : 211930 376 : ValLysThr : 378 ||| SerValThr 211931 : AGtgttaca : 211941 vulgar: AmOr13 317 378 . KQ414889.1 211758 211941 + 100 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 211759 211941 100 + . gene_id 20 ; sequence AmOr13 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 211759 211941 . + . KQ414889.1 exonerate:protein2genome:local exon 211759 211941 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 211759 211941 100 + . alignment_id 20 ; Query AmOr13 ; Align 211759 318 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 559 Query range: 4 -> 258 Target range: 204215 -> 204980 5 : HisThrGluLysAspLeuLysGlnAlaPhe<->TyrValGlnThrPheLeuLysIleI : 23 ....!!|||:!!||||||!:! ! ||| !:!|||:!! !!.!!||| !|||: ArgAlaGluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleV 204216 : AGGGCAGAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAG : 204273 24 : leGlyAlaTrpProIleAlaIleGluSerSerLeuGlySerLysIleGlnLysTrpPh : 42 !!||||||||||||||| !!:!:.!.||||||! ! !!!!!:!:!! !::! ! .! alGlyAlaTrpProIleProValAsnSerSerProPheThrArgLeuValArgArgIl 204274 : TCGGTGCGTGGCCGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAAT : 204330 43 : eIleIleSerPheTyrLeuPheLeuGlnIleCysIleValAlaProCysIleLeuAsp : 61 . ! ! ! !! ! |||||| ... :!::!!!.!||| !!:!!||| !! eGluHisValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyr 204331 : AGAACACGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTAC : 204387 62 : ValPheLeuLysGluLysAsnGlySerArgArgIleAsnLeuPheMetLeuLeuIleS : 81 ||||||||||||||||||||||||!.!! !|||:!:!!.:!!.!! !! !:!!:!:! ValPheLeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValA 204388 : GTGTTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGA : 204447 82 : erThrLeuAsnGlnValPheLysTyrValIleThrLeuAsnArgAlaAsnGluLeuAr : 100 :! ! !! ||| !!||||||||| !:!!! !||| !!||| !:!!:!!:!!!: snCysSerIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGl 204448 : ACTGCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCA : 204504 101 : gIleAlaIleHisGluIleLysLysAspTrpLeuThrAlaThrProGluAspArgPhe : 119 !! ::!:!::!! |||!:!:::||||||:!! !|||||| !|||:!!|||!!. nLysSerLeuAsnThrIleArgArgAspTrpIleGluAlaThrAspGluAsnArgLeu 204505 : GAAGAGTTTGAACACCATCAGACGCGACTGGATAGAGGCTACGGATGAAAATCGGTTG : 204561 120 : IlePheValMetAsnSerArgIleGlyGlnArgIleMetLeuIleMetAlaPheIleM : 139 |||||| ! !!!.:!!!:!||||||!:!|||:!::!!|||||| ||| !! !| IlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrM 204562 : ATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTA : 204621 140 : etTyrIleSerGlyLeuGlyTyrArgMetValLeuProLeuLeuLysGlyLysIleVa : 158 ||||| !.!!|||||| !!||||||! !:!!||||||||||||!:!|||! !||||| etTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleVa 204622 : TGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGT : 204678 159 : lLeuProAsnAsnValThrIleArgLeuLeuProCysProThrTyrPheThrPhePhe : 177 | !|||:!!|||||||||||||||! !||||||||||||..!||||||...|||||| lThrProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePhe 204679 : AACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttcttt : 204735 178 : AsnGluLeuValSerProTyrTyrGluMetIlePheMetLeuGlnLeuLeuAlaArgP : 197 ||||||! ! !|||||| !!||||||!!::!!|||!!:||||||:!!:!!||| !!| AsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyP 204736 : aacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTT : 204795 198 : hePheIleTyrThrValLeuAsnSerThrValGlyIleSerLeuMetLeuSerLeuHi : 216 || !!! !|||.!!|||:!!!:!.!!||| !|||!!:!!! !:!!!!! !||||| heValThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHi 204796 : TTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCA : 204852 217 : sMetCysSerLeuLeuLysIleLeuThrArgLysMetAlaAspLeuThrAspGlySer : 235 | !||||||:!!|||!:!||||||..!!.!|||||| !! |||..!||| !:!! sAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAla 204853 : CGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCG : 204909 236 : IleIleSerGluLysIleMetGlnGlnArgIleValAspIleIleGluTyrGlnThrA : 255 !!!:!!!|||! !:!!:!!!!.::!!:!|||!.!||||||:!!||||||||||||! AspMetThrGluThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrL 204910 : GACATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGA : 204969 256 : rgIleLysArg : 258 :!||||||||| ysIleLysArg 204970 : AGATAAAGAGG : 204980 vulgar: AmOr4 4 258 . KQ414889.1 204215 204980 + 559 M 10 30 G 0 3 M 244 732 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204216 204980 559 + . gene_id 1 ; sequence AmOr4 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204216 204980 . + . KQ414889.1 exonerate:protein2genome:local exon 204216 204980 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 204216 204980 559 + . alignment_id 1 ; Query AmOr4 ; Align 204216 5 30 ; Align 204249 15 732 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 303 Query range: 291 -> 396 Target range: 206050 -> 207607 292 : GluTrpGluAsnHisAsnIleAlaSerThrValIleTyrPheSerGlyLeuValThrC : 311 ||||||||||||:!!|||! !.!!:!!..!:!!:!:|||.!!!!! !! !:!!:!!| GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 312 : ysThrLeuMetIleTyrIleIleCysTyrIleGlyGlnLeuLeuLeuAspGlu >>> : 329 |||||!!! :!!!:!|||:!!|||||||||||||||||||||:!!|||:!! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 330 : > Target Intron 1 >>>> SerAsnAsnLeuAlaGlnThrCysIleThrLeuA : 340 81 bp !:!:!! !:!!!.! !|||! ! !|||:!!| ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 341 : snTrpTyrArgPheProLysLysLysAlaArgTyrLeuIleLeuMetIleIleMetSe : 359 |||||||||||.!!|||!!.!:! ! ||||||! !:!!||||||!!:||| !||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 360 : rAsnTyrProIleLysLeuThrAlaAlaLysValValAspValSerLeuThrThrPhe : 378 |||||||||||||||||||||||||!.!|||:!! !!!!::!!||||||.!!!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 379 : ThrAsp >>>> Target Intron 2 >>>> ValMetLysAlaAlaValGlyTy : 388 |||||| 1161 bp |||||||||!.!|||:!!||||| ThrAsp++ ++ValMetLysValAlaMetGlyTy 206391 : ACCGATgt.........................agGTAATGAAGGTGGCGATGGGATA : 207581 389 : rLeuAsnMetLeuArgGluValIle : 396 |!!!|||!!:||||||||||||:!! rPheAsnIleLeuArgGluValVal 207582 : CTTCAACATACTCCGTGAAGTCGTA : 207607 vulgar: AmOr4 291 396 . KQ414889.1 206050 207607 + 303 M 37 111 5 0 2 I 0 77 3 0 2 M 52 156 5 0 2 I 0 1157 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 207607 303 + . gene_id 2 ; sequence AmOr4 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206398 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206398 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206399 206400 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206399 207559 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 207558 207559 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 207560 207607 . + . KQ414889.1 exonerate:protein2genome:local exon 207560 207607 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 207607 303 + . alignment_id 2 ; Query AmOr4 ; Align 206051 292 111 ; Align 206243 329 156 ; Align 207560 381 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 228 Query range: 19 -> 256 Target range: 208239 -> 208956 20 : LeuLysIleIleGlyAlaTrpProIleAlaIleGluSerSerLeuGlySerLysIleG : 39 |||||||||||||||:!!||||||! !:!!|||!!: !!|||! ! !..!!!.! !| LeuLysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerG 208240 : TTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCC : 208297 40 : lnLysTrpPheIleIleSerPheTyrLeuPheLeuGlnIleCysIleValAlaProCy : 58 || ! .!!:!!! ! !.!! !! !! !|||! !! !|||||| !||| lnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProTh 208298 : AGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGAC : 208354 59 : sIleLeuAspValPheLeuLysGluLysAsnGlySerArgArgIleAsnLeuPheMet : 77 ! !:!! !!.!.!!||| !! :!!:!! !! ! !!:!:!!!!.:!!! !! rGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSer 208355 : CGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGC : 208411 78 : LeuLeuIleSerThrLeuAsnGlnValPheLysTyrValIleThrLeuAsnArgAlaA : 97 !|||! !! ! !:!!! ! !! ||||||||||||! ! ! !|||! !. AlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluG 208412 : GCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGG : 208471 98 : snGluLeuArgIleAlaIleHisGluIleLysLysAspTrpLeuThrAlaThr<->Pr : 115 .!!!::!!|||! ..!:!!.!. ! :!!:!! |||||| !!.!!.! ! lyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGl 208472 : GTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGA : 208528 116 : oGluAspArgPheIlePheValMetAsnSerArgIleGlyGlnArgIleMetLeuIle : 134 !||||||||| |||.!.:!! |||:!!!!!.!!!.!::!!:!:!:!!::!!||| uGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIle 208529 : GGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATA : 208585 135 : MetAlaPheIleMetTyrIleSerGlyLeuGlyTyrArgMetValLeuProLeuLeuL : 154 !.! !.!!|||||| !.!. ::: ||| :!:!.!||||||||| !: CysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrA 208586 : TGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTC : 208645 155 : ysGlyLysIleValLeuPro<->AsnAsnValThrIleArgLeuLeuProCysProTh : 172 :!! !|||:!!||| ! ! ..!|||:!!||| !||| !||| !! !|||.. rgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProVa 208646 : GAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGT : 208702 173 : rTyrPheThrPhePheAsnGluLeuValSerProTyrTyrGluMetIlePheMetLeu : 191 ! ! !.!!.!.:!!! ! ! !|||||| !!|||!!:.!!!:!! !:!! lProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrVal 208703 : TCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTA : 208759 192 : GlnLeuLeuAlaArgPhePheIleTyrThrValLeuAsnSerThrValGlyIleSerL : 211 |||||||||:!! !!||| !! !:!!!.!:!! ! !.!!.!! !|||:!::!! GlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaA 208760 : CAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCG : 208819 212 : euMetLeuSerLeuHisMetCysSerLeuLeuLysIleLeuThrArgLysMetAlaAs : 230 !:!!|||:!!:!!||| !|||.!!! !|||:!!||||||! ! ! !|||! ! ! laLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLy 208820 : CGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAA : 208876 231 : pLeuThrAspGlySerIleIleSerGluLysIleMetGlnGlnArgIleValAspIle : 249 |||..!|||||| !! !..!||||||! !:!!.!.||||||:!:!.!:!!||| sLeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIle 208877 : GTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATC : 208933 250 : IleGluTyrGlnThrArgIle : 256 :!:||| ! !!...!|||:!: ValGluGlnHisValArgVal 208934 : GTGGAGCAGCATGTTCGAGTG : 208956 vulgar: AmOr4 19 256 . KQ414889.1 208239 208956 + 228 M 95 285 G 0 3 M 46 138 G 0 3 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208240 208956 228 + . gene_id 3 ; sequence AmOr4 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208240 208956 . + . KQ414889.1 exonerate:protein2genome:local exon 208240 208956 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208240 208956 228 + . alignment_id 3 ; Query AmOr4 ; Align 208240 20 285 ; Align 208528 115 138 ; Align 208669 161 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 225 Query range: 255 -> 391 Target range: 286690 -> 287252 256 : IleLysArgPheLeuSerAsnThrGluLeuIleThrGlnTyrPheCysPheTyrAspI : 275 ||| !!!|||:!!|||.!.! !||| !:!! !.!. ! .!.|||||| !!!:: IlePheSerPheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluV 286691 : ATTTTCAGTTTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGG : 286748 276 : leGlyCysSerThrCysLeuIleCysPheIleGlyTyrSerIleIleVal >>>> T : 292 !: ! !!!!!|||! !|||||||||:!:||||||! !:!!:!:..! alIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeuThr++ 286749 : TGATTGGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTACTGACGgt...... : 286801 293 : arget Intron 1 >>>> GluTrpGluAsnHisAsnIleAlaSerThrValIleT : 304 80 bp |||||||||.!. !.!.! ! !.!!|||:!!! | ++GluTrpGluGlnSerGluThrIleGlyThrIleThrT 286802 : ...................agGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGT : 286915 305 : yrPheSerGlyLeuValThrCysThrLeuMetIleTyrIleIleCysTyrIleGlyGl : 323 ||! !!!! !||||||:!!! !|||!!!! :!!!:!|||:!!||||||||||||:! yrCysThrLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGl 286916 : ATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGA : 286972 324 : nLeuLeuLeuAspGlu >>>> Target Intron 2 >>>> SerAsnAsnLeuA : 333 !:!!|||! !!!:::: 74 bp !! !!.:!!! uIleLeuSerGluGln++ ++CysLeuLysValG 286973 : AATTCTCTCCGAACaggt.........................agtGCTTAAAAGTCG : 287076 334 : laGlnThrCysIleThrLeuAsnTrpTyrArgPheProLysLysLysAlaArgTyrLe : 352 .! !:!! ! !! !:!!:!!|||||||||!!.||| !|||! !|||!:! !|| lyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLe 287077 : GCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTT : 287133 353 : uIleLeuMetIleIleMetSerAsnTyrProIleLysLeuThrAlaAlaLysValVal : 371 |||||||!!:.!! !:!!||||||! ! !!|||||||||||||||!.!|||:!!:!! uIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIle 287134 : GATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATC : 287190 372 : AspValSerLeuThrThrPheThrAspValMetLysAlaAlaValGlyTyrLeuAsnM : 391 |||:!!||||||!:!!:!||| !..!|||! ! ! !:!!..!|||! !:!!: AspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisL 287191 : GATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATT : 287250 392 : et : 391 !! eu 287251 : TG : 287252 vulgar: AmOr4 255 391 . KQ414889.1 286690 287252 + 225 M 36 108 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286691 287252 225 + . gene_id 4 ; sequence AmOr4 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286691 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286691 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286691 287252 225 + . alignment_id 4 ; Query AmOr4 ; Align 286691 256 108 ; Align 286879 292 111 ; Align 287064 329 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 291 -> 381 Target range: 305100 -> 305783 292 : GluTrpGluAsnHisAsnIleAlaSerThrValIleTyrPheSerGlyLeuValThrC : 311 !!:||||||!:! !|||! !!.!||| !..!! !||| ! !|||:!!:!! AspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValLeuLeuIleSerV 305101 : GATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGTTACTGATATCTG : 305158 312 : ysThrLeuMetIleTyrIleIleCysTyrIleGlyGlnLeuLeuLeuAspGlu >>> : 329 |||!!!! |||!:!|||:!!||||||||||||:!!:!!|||:!!!!::!! alThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMetGluLys++ 305159 : TAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTATGGAAAAGgt... : 305214 330 : > Target Intron 1 >>>> SerAsnAsnLeuAlaGlnThrCysIleThrLeuA : 340 413 bp |||!:!!:!:!!!.! !:!!|||.!!! !:!!! ++SerSerSerValGlyLeuSerCysPheMetIleS 305215 : ......................agAGCAGTAGCGTTGGATTATCCTGTTTTATGATCA : 305658 341 : snTrpTyrArgPheProLysLysLysAlaArgTyrLeuIleLeuMetIleIleMetSe : 359 :!||||||!.!!!.|||! |||! ! !!.! !|||||||||!!:||| !||||| erTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleLeuIleIleAlaMetSe 305659 : GTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTTTAATCATTGCCATGTC : 305715 360 : rAsnTyrProIleLysLeuThrAlaAlaLysValValAspValSerLeuThrThrPhe : 378 |!:! !!||| !|||:!!!:!|||!.!||||||||||||:!!||||||:!!|||||| rSerAsnProAlaLysIleSerAlaGlyLysValValAspLeuSerLeuSerThrPhe 305716 : AAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTATCTTTATCCACATTT : 305772 379 : ThrAspVal : 381 !:!!||| GlyAsnVal 305773 : GGAAACGTG : 305783 vulgar: AmOr4 291 381 . KQ414889.1 305100 305783 + 204 M 37 111 5 0 2 I 0 409 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305101 305783 204 + . gene_id 5 ; sequence AmOr4 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305101 305783 204 + . alignment_id 5 ; Query AmOr4 ; Align 305101 292 111 ; Align 305625 329 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 201 Query range: 269 -> 391 Target range: 280025 -> 280465 270 : PheCysPheTyrAspIleGlyCysSerThrCysLeuIleCysPheIleGlyTyrSerI : 289 !!.|||!:!!:! !!|||! ! :!!! ! ! !.!! !.!. !..!! |||: LeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerLeuSerV 280026 : TTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGTTGTCAG : 280083 290 : leIleValGluTrpGluAsnHisAsnIleAlaSerThrValIleTyrPheSerGlyLe : 308 !!.!! !|||||||||.!.:!!:!! ! !.!!||| !!! |||!!.! ! !|| alPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLe 280084 : TTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCT : 280140 309 : uValThrCysThrLeuMetIleTyrIleIleCysTyrIleGlyGlnLeuLeuLeuAsp : 327 |:!!:!!! |||!!!! :!!!:!|||:!!||||||||||||:!!:!!|||! !!!: uIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGlu 280141 : CATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAA : 280197 328 : Glu >>>> Target Intron 1 >>>> SerAsnAsnLeuAlaGlnThrCysIl : 337 ::: 74 bp !!! !!.:!!!.! !:!! ! Gln++ ++CysLeuLysValGlyValSerThrTy 280198 : Caggt.........................agTGCTTAAAAGTCGGCGTGTCAACTTA : 280301 338 : eThrLeuAsnTrpTyrArgPheProLysLysLysAlaArgTyrLeuIleLeuMetIle : 356 !! !:!!:!!|||||||||!!.||| !|||||||||!:! !|||||||||!!:.!! rMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePhe 280302 : CATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTC : 280358 357 : IleMetSerAsnTyrProIleLysLeuThrAlaAlaLysValValAspValSerLeuT : 376 !:!!||||||! ! !!|||||||||||||||!.!|||:!!:!!|||:!!||||||! AlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuS 280359 : GCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAA : 280418 377 : hrThrPheThrAspValMetLysAlaAlaValGlyTyrLeuAsnMet : 391 :!!:!||| !..!|||! ! ! !:!!..!|||! !:!!:!! erSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280419 : GCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: AmOr4 269 391 . KQ414889.1 280025 280465 + 201 M 59 177 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280026 280465 201 + . gene_id 6 ; sequence AmOr4 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280026 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280026 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280026 280465 201 + . alignment_id 6 ; Query AmOr4 ; Align 280026 270 177 ; Align 280277 329 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 192 Query range: 291 -> 395 Target range: 301686 -> 302160 292 : GluTrpGluAsnHisAsnIleAlaSerThrValIleTyrPheSerGlyLeuValThrC : 311 ||||||:!!||| !:!!! !:!!! !:!!! !!:!|||!!! !|||..!:!!! GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerP 301687 : GAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGT : 301744 312 : ysThrLeuMetIleTyrIleIleCysTyrIleGlyGlnLeuLeuLeuAspGlu >>> : 329 !|||!!!! |||!:!|||.!!||||||||||||:!!:!!|||! !!!::!! heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301745 : TCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt... : 301800 330 : > Target Intron 1 >>>> SerAsnAsnLeuAlaGlnThrCysIleThrLeuA : 340 80 bp !!!!:!.!.:!!!.!..!.!!! ! !:!!: ++CysSerGlnIleGlySerAlaSerTyrGluIleA 301801 : ......................agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCG : 301911 341 : snTrpTyrArgPheProLysLysLysAlaArgTyrLeuIleLeuMetIleIleMetSe : 359 !!||||||!.!!!.||| !|||!:!||| ! !!|||||||||:!:! !:!:!!:|| spTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSe 301912 : ATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATC : 301968 360 : rAsnTyrProIleLysLeuThrAlaAlaLysValValAspValSerLeuThrThrPhe : 378 |.!.|||||| ||||||||||||!.!|||:!!:!!|||:!!||||||!.!|||||| rGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPhe 301969 : GCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTC : 302025 379 : ThrAsp >>>> Target Intron 2 >>>> ValMetLysAlaAlaValGlyTy : 388 !:!..! 82 bp |||:!!|||.!!:!!|||! !|| SerSer++ ++ValValLysThrSerValValTy 302026 : AGCTCTgt.........................agGTGGTGAAAACATCGGTGGTGTA : 302137 389 : rLeuAsnMetLeuArgGluVal : 395 |||||||:!:|||||| !||| rLeuAsnLeuLeuArgThrVal 302138 : CTTGAATTTACTGCGAACAGTT : 302160 vulgar: AmOr4 291 395 . KQ414889.1 301686 302160 + 192 M 37 111 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301687 302160 192 + . gene_id 7 ; sequence AmOr4 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302160 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302160 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301687 302160 192 + . alignment_id 7 ; Query AmOr4 ; Align 301687 292 111 ; Align 301878 329 156 ; Align 302116 381 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 188 Query range: 291 -> 381 Target range: 224323 -> 224658 292 : GluTrpGluAsnHisAsnIleAlaSerThrValIleTyrPheSerGlyLeuValThrC : 311 ||||||...::: :!!:!!.!!|||.!!|||! !||||||! ! !|||:!!:!: GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 312 : ysThrLeuMetIleTyrIleIleCysTyrIleGlyGlnLeuLeuLeuAspGlu >>> : 329 |||... |||:::|||...||||||||||||:!!|||:!! !!!:::: euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln++ 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggt... : 224437 330 : > Target Intron 1 >>>> SerAsnAsnLeuAlaGlnThrCysIleThrLeuA : 340 65 bp ......:::...|||..!! !! !:!!: ++CysGluLysIleGlyGlnValSerTyrMetIleA 224438 : ......................agtgtgaaaaaattggacaAGTGTCGTACATGATCG : 224533 341 : snTrpTyrArgPheProLysLysLysAlaArgTyrLeuIleLeuMetIleIleMetSe : 359 !!|||||||||!!. !! !!!.||| !! !! !! !||||||!!:||| ||||| spTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 224534 : ACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGATGTC : 224590 360 : rAsnTyrProIleLysLeuThrAlaAlaLysValValAspValSerLeuThrThrPhe : 378 ||||! ! !!|||||||||||||||!.!!!.:!!|||!!::!!!!!|||||||||||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThrPhe 224591 : CAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACTTTC : 224647 379 : ThrAspVal : 381 !|||||| GlyAspVal 224648 : GGTGACGTA : 224658 vulgar: AmOr4 291 381 . KQ414889.1 224323 224658 + 188 M 37 111 5 0 2 I 0 61 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224658 188 + . gene_id 8 ; sequence AmOr4 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224658 188 + . alignment_id 8 ; Query AmOr4 ; Align 224324 292 111 ; Align 224500 329 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 163 Query range: 18 -> 224 Target range: 274407 -> 275031 19 : PheLeuLysIleIleGlyAlaTrpProIleAlaIleGluSerSerLeuGlySerLysI : 38 ||||||||| !|||||||||||||||:!!||| !!!!!! ! !..!::!| PheLeuLysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgI 274408 : TTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAA : 274465 39 : leGlnLysTrpPheIleIleSerPheTyrLeuPheLeuGlnIleCysIleValAlaPr : 57 ||! ..! ...:::||| ... !! !!!! !:!!! !! !||| !|| leLeuSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIlePr 274466 : TCCTTTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCC : 274522 58 : oCysIleLeuAspValPheLeuLysGluLysAsnGlySerArgArgIleAsnLeuPhe : 76 | !!|||!!! !!:!!.!.||| !!!::!!!:! ! !! !!:!:!:!!.|||.!! oSerIlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeu 274523 : AAGCATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTC : 274579 77 : MetLeuLeuIleSerThrLeuAsnGlnValPheLysTyrValIleThrLeuAsnArgA : 96 ! !||| ! ! !!!!! ! !! !.!!!!.|||..!! !||| |||: GlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgS 274580 : GGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCA : 274639 97 : laAsnGluLeuArgIleAlaIleHisGluIleLysLysAspTrpLeuThrAlaThr<- : 115 :!!!.|||:!!||| !..!:!:.!..!.!!::!!! !|||||| !! !!.!||| erLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrAr 274640 : GCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAG : 274696 116 : >ProGluAspArgPheIlePheValMetAsnSerArgIleGlyGlnArgIleMetLeu : 133 |||||||||!:! :!:.!.:!!! !|||:!!!:!||||||!:: !:!! !:!! gProGluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIle 274697 : ACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATC : 274753 134 : IleMetAlaPheIleMetTyrIleSerGlyLeuGlyTyrArgMetValLeuProLeuL : 153 .!! ||| .!!||| ! !.!!! !||| !!||| !!:!!:!! ! !!!!! PheCysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheT 274754 : TTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCA : 274813 154 : euLysGlyLysIleValLeuProAsnAsnVal<->ThrIleArgLeuLeuProCysPr : 171 !! ! !! :!! !:!! !|||.!...! |||:!:!.!:!!||||||||| hrMetGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLy 274814 : CTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAA : 274870 172 : oThrTyrPheThrPhePheAsnGluLeuValSerProTyrTyrGluMetIlePheMet : 190 !.!!||| ! !.!! !! ! ! !..!|||||| !!|||!!::!!.!! sAlaTyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValLeuAla 274871 : AGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCC : 274927 191 : LeuGlnLeuLeuAlaArgPhePheIleTyrThrValLeuAsnSerThrValGlyIleS : 210 ! !|||!!!:!!:!! !!|||.!!:!: !!:!! ! ! !.!!.!! !!.!!:!!: SerGlnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuA 274928 : TCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTG : 274987 211 : erLeuMetLeuSerLeuHisMetCysSerLeuLeuLysIleLeu : 224 !! !:!!!!!:!! !||| ! !.!!! !|||!..:!:||| laAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeu 274988 : CCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTG : 275031 vulgar: AmOr4 18 224 . KQ414889.1 274407 275031 + 163 M 96 288 G 0 3 M 49 147 G 0 3 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274408 275031 163 + . gene_id 9 ; sequence AmOr4 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274408 275031 . + . KQ414889.1 exonerate:protein2genome:local exon 274408 275031 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274408 275031 163 + . alignment_id 9 ; Query AmOr4 ; Align 274408 19 288 ; Align 274699 115 147 ; Align 274849 164 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 18 -> 235 Target range: 262873 -> 263530 19 : PheLeuLysIleIleGlyAlaTrpProIleAlaIleGluSerSerLeuGlySerLysI : 38 .!.|||||| |||||||||||||||:!::!! !..!! !||| ! !..!::!| LeuLeuLysProIleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgI 262874 : CTGCTGAAACCGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAA : 262931 39 : leGlnLysTrpPheIleIleSerPheTyrLeuPheLeuGlnIleCysIleValAlaPr : 57 || !!::.!!:!!||| ! !!! !! !! !||| !:!!! !! !||| !|| leIleTrpPheLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIlePr 262932 : TTATCTGGTTTCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCC : 262988 58 : oCysIleLeuAspValPheLeuLysGluLysAsnGlySerArgArgIleAsnLeuPhe : 76 |! !|||||| !!:!! !!|||:!!! :!!||| ! !! !!:!:!:.!.:!!.!! oSerIleLeuHisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeu 262989 : TTCCATACTTCATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTC : 263045 77 : MetLeuLeuIleSerThrLeuAsnGlnValPheLysTyrValIleThrLeuAsnArgA : 96 ! !||| !..! !!!! ! :!!.!!!!.|||..! !||| !!.!: GlyProLeuGlyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisS 263046 : GGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACA : 263105 97 : laAsnGluLeuArgIleAlaIleHisGluIleLysLysAspTrpLeuThrAlaThrPr : 115 :!!!.!!::!!!:! !..!:!:!!..!.:!::!!:!!||||||! !! !!.!||| erLysAspIleGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrAr 263106 : GTAAAGATATACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAG : 263162 116 : o<->GluAspArgPheIlePheValMetAsnSerArgIleGlyGlnArgIleMetLeu : 133 ! ||||||!:! !|||.!.:!!! !|||:!!!:! !|||!:: !:!: ! gLeuGluAspGlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAla 263163 : GTTGGAGGATCAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCT : 263219 134 : IleMetAlaPheIleMetTyrIleSerGlyLeuGlyTyrArgMetValLeuProLeuL : 153 ! |||.!!.!!||| ! ! ||| !:!! !! ! !!:!:||| ! !!!!! SerCysAlaIlePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheT 263220 : TCTTGCGCGATCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCA : 263279 154 : euLysGlyLysIleValLeuProAsnAsnValThrIle<->ArgLeuLeuProCysPr : 171 !! ! ! !|||! ! ! !|||.!...!! !||| |||:!!||||||||||| hrThrGlnValIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysPr 263280 : CTACACAGGTGATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCC : 263336 172 : oThrTyrPheThrPhePheAsnGluLeuValSerProTyrTyrGluMetIlePheMet : 190 |..!||| !.!!.!! ! !..!!:!||| !!|||!!:.!!.!! oValTyrLysGluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAla 263337 : AGTGTACAAAGAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCC : 263393 191 : LeuGlnLeuLeuAlaArgPhePheIleTyrThrValLeuAsnSerThrValGlyIleS : 210 !|||!!!|||:!! !!|||.!!:!! !.!!..! ! !.!!.!! !!|||!!:! ThrGlnPheLeuSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetT 263394 : ACGCAATTTCTGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGA : 263453 211 : erLeuMetLeuSerLeuHisMetCysSerLeuLeuLysIleLeuThrArgLysMetAl : 229 !! !:!!!!!:!! !||| |||.!!! !|||!!.:!:|||! ! ! !!!:.! hrAlaValPheAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleTh 263454 : CAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCAC : 263510 230 : aAspLeuThrAspGlySer : 235 !!!:!!!..!:!! !||| rGluPheValAsnGlnSer 263511 : GGAATTCGTGAACCAGTCC : 263530 vulgar: AmOr4 18 235 . KQ414889.1 262873 263530 + 156 M 97 291 G 0 3 M 50 150 G 0 3 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262874 263530 156 + . gene_id 10 ; sequence AmOr4 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262874 263530 . + . KQ414889.1 exonerate:protein2genome:local exon 262874 263530 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262874 263530 156 + . alignment_id 10 ; Query AmOr4 ; Align 262874 19 291 ; Align 263168 116 150 ; Align 263321 166 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 324 -> 384 Target range: 292380 -> 292560 325 : LeuLeuAspGluSerAsnAsnLeuAlaGlnThrCysIleThrLeuAsnTrpTyrArgP : 344 :!!||| !!:!!.!!!:!.!.:!!|||!!..!!! ! ! ! !.!.||||||!.!. ValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnL 292381 : GTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATC : 292438 345 : heProLysLysLysAlaArgTyrLeuIleLeuMetIleIleMetSerAsnTyrProIl : 363 !.|||!:!::!||||||||| !!:!!:!!|||:!!:!! !!!:!!!!!.:!!||||| euProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIl 292439 : TGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGAT : 292495 364 : eLysLeuThrAlaAlaLysValValAspValSerLeuThrThrPheThrAspValMet : 382 |||||||||||||!.!|||:!! !!! !:!!||||||!.!|||||| !! !||| eLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArg 292496 : CAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGT : 292552 383 : LysAla : 384 :!!:!! GluSer 292553 : GAATCA : 292560 vulgar: AmOr4 324 384 . KQ414889.1 292380 292560 + 116 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292381 292560 116 + . gene_id 11 ; sequence AmOr4 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292381 292560 . + . KQ414889.1 exonerate:protein2genome:local exon 292381 292560 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292381 292560 116 + . alignment_id 11 ; Query AmOr4 ; Align 292381 325 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 329 -> 381 Target range: 219515 -> 219671 330 : AsnAsnLeuAlaGlnThrCysIleThrLeuAsnTrpTyrArgPheProLysLysLysA : 349 ......:::...::: !! !:!!.!.|||||||||!!. !! !|||||| ArgLysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysL 219516 : aggaaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAA : 219573 350 : laArgTyrLeuIleLeuMetIleIleMetSerAsnTyrProIleLysLeuThrAlaAl : 368 !! !!:: !:!!|||! ||| !|||||||||! ! !!|||||||||||||||!. ysLeuTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGl 219574 : AGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGG : 219630 369 : aLysValValAspValSerLeuThrThrPheThrAspVal : 381 !!!.:!!|||!!::!!|||:!!!:!||||||||||||||| yAsnMetValGluLeuSerIleSerThrPheThrAspVal 219631 : AAATATGGTCGAATTGTCTATCAGCACTTTTACCGACGTG : 219671 vulgar: AmOr4 329 381 . KQ414889.1 219515 219671 + 113 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219516 219671 113 + . gene_id 12 ; sequence AmOr4 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219516 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219516 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219516 219671 113 + . alignment_id 12 ; Query AmOr4 ; Align 219516 330 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 269 -> 333 Target range: 261667 -> 261859 270 : PheCysPheTyrAspIleGlyCysSerThrCysLeuIleCysPheIleGlyTyrSerI : 289 |||! ! !|||..! !! !|||!:! ! :!!|||! !||| ::: : PheTyrAspTyrSerTyrAspCysAsnCysValIleIlePhePhe***TyrPhePheL 261668 : TTTTACGATTACAGTTACGATTGCAATTGTGTAATAATCTTTTTctgatatttctttc : 261725 290 : leIleValGluTrpGluAsnHisAsnIleAlaSerThrValIleTyrPheSerGlyLe : 308 ::::: ||||||! .!.!!.:!!||| !!:! ! !! ||||||! ! !|| euLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheMetMetLe 261726 : ttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCATGATGCT : 261782 309 : uValThrCysThrLeuMetIleTyrIleIleCysTyrIleGlyGlnLeuLeuLeuAsp : 327 |:!!.!! ! !!!!! :!!!:!||||||||||||||||||:!!:!!||| !!!: uIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLeuThrGlu 261783 : GATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACTAACGGAA : 261839 328 : GluSerAsnAsnLeuAla : 333 :!! !.!.:!!|||||| GlnValGlnHisLeuAla 261840 : CAGGTACAACATTTGGca : 261859 vulgar: AmOr4 269 333 . KQ414889.1 261667 261859 + 106 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261668 261859 106 + . gene_id 13 ; sequence AmOr4 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 261668 261859 . + . KQ414889.1 exonerate:protein2genome:local exon 261668 261859 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 261668 261859 106 + . alignment_id 13 ; Query AmOr4 ; Align 261668 270 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 583 Query range: 0 -> 257 Target range: 204200 -> 204977 1 : MetValGlnIleArgAsnAlaArgGluGlyIleAsnHisThrPheTrpPheAlaTyrP : 20 ||| ! !||| !!..|||..!|||! !:!:!..:!!.!! ! |||!.! ! | MetSerGlyIleAlaArgAlaGluGluAspLeuArgTyrAlaThrArgPheValLysP 204201 : ATGTCTGGAATCGCGAGGGCAGAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGC : 204258 21 : roLeuSerArgMetLeuGlyTyrTrpProLeuAsnValProSerSerAlaPheSerLy : 39 ||:!!! ! !!!!::!!||| ||||||:!! ||| !|||||| !!|||!!!!: roIleLeuGlyIleValGlyAlaTrpProIleProValAsnSerSerProPheThrAr 204259 : CGATTTTAGGGATAGTCGGTGCGTGGCCGATTCCAGTGAACTCCTCTCCGTTCACGAG : 204315 40 : sIleLeuAsnSerPheThrIlePhePheSerTyrLeuLeuProLeuIleValLeuIle : 58 !:!!:!!... !!.!. ! ! ! !!!!!|||...||| ...::::!!:!!:!! gLeuValArgArgIleGluHisValValThrTyrPheLeuPhePheLeuMetIleVal 204316 : GCTAGTACGGCGAATAGAACACGTAGTCACCtatttcctcttctttctgaTGATCGTA : 204372 59 : ProGlyLeuLeuTyrValPheLeuLysGluArgAsnGlyArgArgLysValLysMetL : 78 ||||||||||||||||||||||||||||||!:!||||||!:!! !::::!!|||!!:| ProGlyLeuLeuTyrValPheLeuLysGluLysAsnGlyLysIleArgLeuLysIleL 204373 : CCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTC : 204432 79 : euMetProHisIleAsnSerIleAlaGlnMetThrLysTyrThrIleIleLeuArgAr : 97 || !||| !:!:|||!!!! ! !|||.!. !||||||:!!:!!|||||| !|| euGlyProIleValAsnCysSerIleGlnPhePheLysTyrSerValIleLeuTyrAr 204433 : TCGGGCCGATCGTGAACTGCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCG : 204489 98 : gThrLysGluLeuGlyLysLeuLeuAspGluIleLysLysAspTrpSerThrAlaThr : 116 |! ! ! :!!:!! !||| !|||:!! |||!:!:::||||||! ! !|||||| gIleAspLysIleGlnLysSerLeuAsnThrIleArgArgAspTrpIleGluAlaThr 204490 : GATCGACAAAATTCAGAAGAGTTTGAACACCATCAGACGCGACTGGATAGAGGCTACG : 204546 117 : GlnGluAsnArgArgIlePheSerGluArgAlaSerIleGluHisLysLeuThrMetI : 136 .!.||||||||| !|||||| !!..!!:!|||!.!|||! !!..!:!:!! !:!!| AspGluAsnArgLeuIlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuI 204547 : GATGAAAATCGGTTGATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGA : 204606 137 : leValAlaIleThrIleTyrGlyGlyGlyPheLeuTyrArgAlaIleLeuProLeuSe : 155 ||!.!||| !|||!!:||||||||||||!!.! !||||||.!!||||||||||||! leAlaAlaAlaThrMetTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLe 204607 : TTGCAGCCGCCACTATGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTT : 204663 156 : rLysGlyArgIleValLeuProAsnAsnValThrIleArgLeuLeuProCysProGly : 174 !!:!|||! !|||||| !|||:!!|||||||||||||||! !||||||||||||! ! uArgGlyThrIleValThrProAspAsnValThrIleArgProLeuProCysProVal 204664 : GAGAGGAACGATCGTAACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTT : 204720 175 : TyrPheGlySerLeuAspGluGlnValThrProAsnTyrGluIleIlePheThrLeuG : 194 |||||| ...:::|||||| !:!!|||||||||||||||:!!|||! !|||| TyrPheValPhePheAsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuG 204721 : tactttgttttctttaacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGC : 204780 195 : lnValLeuGlyGlyPheValThrHisThrAlaValCysGlyIleLysSerAlaCysLe : 213 ||:!!:!!!.!||||||||||||:!!.!!!.!:!! !!|||! ! .!! !||| lnIleMetAlaGlyPheValThrTyrAlaValIleSerGlyThrCysGlyMetCysAl 204781 : AAATTATGGCTGGTTTTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGC : 204837 214 : uMetValCysMetHisMetCysGlyLeuLeuArgIleLeuThrAsnLysLeuThrAsp : 232 !:!! !! !:!:||| !|||.!!:!!||||||||||||..!||||||:!!!.!! aLeuPheValLeuHisAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAla 204838 : GCTGTTCGTTCTCCACGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCA : 204894 233 : LeuThrAsn<-><->AspAsnAspGluArgValValGlnGluLysIleValHisIleV : 250 |||..!:!! |||! !|||! !:!!|||!!...!||||||!.! !!|||| LeuValAspLysAlaAspMetThrGluThrLeuValHisArgLysIleAlaAspIleV 204895 : CTTGTGGATAAGGCGGACATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTG : 204954 251 : alGluTyrGlnThrArgIleLys : 257 ||||||||||||||!:!|||||| alGluTyrGlnThrLysIleLys 204955 : TTGAATATCAGACGAAGATAAAG : 204977 vulgar: AmOr8 0 257 . KQ414889.1 204200 204977 + 583 M 235 705 G 0 6 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204201 204977 583 + . gene_id 1 ; sequence AmOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204201 204977 . + . KQ414889.1 exonerate:protein2genome:local exon 204201 204977 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 204201 204977 583 + . alignment_id 1 ; Query AmOr8 ; Align 204201 1 705 ; Align 204912 236 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 252 Query range: 291 -> 381 Target range: 206050 -> 206401 292 : GluTrpGluAspSerAspAlaMetAlaIleIleAlaTyrValAlaLeuGlnThrThrC : 311 |||||||||:!!!:!:!!.!!! |||:!!|||!.!|||:!!.!!||||||! !:!!| GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 312 : ysValPheGlyThrPheSerIleCysTyrValGlyGlnLeuLeuValAspGlu >>> : 329 ||..!||| !!..!|||! !:!!||||||:!!||||||||||||:!!|||:!! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 330 : > Target Intron 1 >>>> SerGluSerValArgGlnAlaCysLysThrLeuL : 340 81 bp !:!.!. !||| !! !.!!! ! |||:!!! ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 341 : ysTrpTyrArgLeuProThrLysLysAlaArgSerLeuIleLeuLeuIleIleMetSe : 359 !.|||||||||||||||!.!!:! ! |||||||||:!!||||||:!!||| !||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 360 : rAsnTyrProIleLysValThrAlaGlyArgLeuValAspValSerLeuValThrPhe : 378 ||||||||||||||||:!!|||||||||!:!:!! !!!!::!!||||||!.!!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 379 : ThrSerIle : 381 |||..!:!! ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: AmOr8 291 381 . KQ414889.1 206050 206401 + 252 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 252 + . gene_id 2 ; sequence AmOr8 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 252 + . alignment_id 2 ; Query AmOr8 ; Align 206051 292 111 ; Align 206243 329 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 200 Query range: 291 -> 384 Target range: 291368 -> 292560 292 : GluTrpGluAspSerAspAlaMetAlaIleIleAlaTyrValAlaLeuGlnThrThrC : 311 |||||||||..!||||||:!!!!:!.!|||:!!.!!||||||.!!|||! |||:!!! GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 312 : ysValPheGlyThrPheSerIleCysTyrValGlyGlnLeuLeuValAspGlu >>> : 329 !..!|||..!! !.!.! !.!!||||||||||||:!!||||||:!!! :!! heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln++ 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAGgt... : 291482 330 : > Target Intron 1 >>>> SerGluSerValArgGlnAlaCysLysThrLeuL : 340 913 bp .!!.....!:!! !!!.|||! ! ! ! !: ++GlySerGluIleAlaHisAlaSerTyrAspThrG 291483 : ......................agGGTAGTGAAATCGCGCACGCTTCCTACGATACAG : 292426 341 : ysTrpTyrArgLeuProThrLysLysAlaArgSerLeuIleLeuLeuIleIleMetSe : 359 !!||||||!.!||||||! !::!|||||||||..!:!!:!!|||:!!:!! !!!:!! luTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIleTh 292427 : AATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAAC : 292483 360 : rAsnTyrProIleLysValThrAlaGlyArgLeuValAspValSerLeuValThrPhe : 378 !!!.:!!|||||||||:!!|||||||||!:!:!! !!! !:!!|||||| !|||||| rLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPhe 292484 : GAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTT : 292540 379 : ThrSerIleIleLysSer : 384 !:!!:!! !:!!||| GlyAlaValArgGluSer 292541 : GGCGCTGTACGTGAATCA : 292560 vulgar: AmOr8 291 384 . KQ414889.1 291368 292560 + 200 M 37 111 5 0 2 I 0 909 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 292560 200 + . gene_id 3 ; sequence AmOr8 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292560 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292560 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 292560 200 + . alignment_id 3 ; Query AmOr8 ; Align 291369 292 111 ; Align 292393 329 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 195 Query range: 20 -> 237 Target range: 262873 -> 263530 21 : LeuSerArgMetLeuGlyTyrTrpProLeuAsnValProSerSerAlaPheSerLysI : 40 ||| !!:! !:!!||| |||||||||::!!.! !!! !||| !.!...!::!| LeuLeuLysProIleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgI 262874 : CTGCTGAAACCGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAA : 262931 41 : leLeuAsnSerPheThrIlePhePheSerTyrLeuLeuProLeuIleValLeuIlePr : 59 ||:!! ! !.!! !||| !! !!!!!|||! !||| !||| !..!:!!||||| leIleTrpPheLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIlePr 262932 : TTATCTGGTTTCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCC : 262988 60 : oGlyLeuLeuTyrValPheLeuLysGluArgAsnGlyArgArgLysValLysMetLeu : 78 |..!:!!|||:!!:!! !!|||:!!! ..!||| !!.!! !|||:!!:!!:!:||| oSerIleLeuHisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeu 262989 : TTCCATACTTCATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTC : 263045 79 : MetProHisIleAsnSerIleAlaGlnMetThrLysTyrThrIleIleLeuArgArgT : 98 |||! ! !.!.!!!.!!!.! |||! !!!.|||||| :!:|||! !!.!! GlyProLeuGlyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisS 263046 : GGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACA : 263105 99 : hrLysGluLeuGlyLysLeuLeuAspGluIleLysLysAspTrpSerThrAlaThrGl : 117 :!|||!!::!! ! ! !:!!.!..!.:!::!!:!!||||||!!!! !!.!|||:: erLysAspIleGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrAr 263106 : GTAAAGATATACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAG : 263162 118 : n<->GluAsnArgArgIlePheSerGluArgAlaSerIleGluHisLysLeuThrMet : 135 ! |||:!!!:!||||||.!. !:!!!.!|||!.! !! !.! ! :!!.!! gLeuGluAspGlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAla 263163 : GTTGGAGGATCAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCT : 263219 136 : IleValAlaIleThrIleTyrGlyGlyGlyPheLeuTyrArgAlaIleLeuProLeuS : 155 ! !|||||| !!!: ! !.!! !.!.! ! ! !! !:!! ! !!!!!! SerCysAlaIlePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheT 263220 : TCTTGCGCGATCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCA : 263279 156 : erLysGlyArgIleValLeuProAsnAsnValThrIle<->ArgLeuLeuProCysPr : 173 !!! ! ! !|||! ! ! !|||.!...!! !||| |||:!!||||||||||| hrThrGlnValIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysPr 263280 : CTACACAGGTGATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCC : 263336 174 : oGlyTyrPheGlySerLeuAspGluGlnValThrProAsnTyrGluIleIlePheThr : 192 |! !||| ! !! !:!! ! .!...!!.!|||!.. !!||||||.!!.!!.!! oValTyrLysGluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAla 263337 : AGTGTACAAAGAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCC : 263393 193 : LeuGlnValLeuGlyGlyPheValThrHisThrAlaValCysGlyIleLysSerAlaC : 212 !||| !!|||..!||||||:!!..! !.!!.!!..! !||| ! .!! ! ThrGlnPheLeuSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetT 263394 : ACGCAATTTCTGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGA : 263453 213 : ysLeuMetValCysMetHisMetCysGlyLeuLeuArgIleLeuThrAsnLysLeuTh : 231 !:!! !!..! ||| ||||||! !|||!.!:!:|||! !::! !:!!|| hrAlaValPheAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleTh 263454 : CAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCAC : 263510 232 : rAspLeuThrAsnAspAsn : 237 |!!:!!!..!|||.!.::! rGluPheValAsnGlnSer 263511 : GGAATTCGTGAACCAGTCC : 263530 vulgar: AmOr8 20 237 . KQ414889.1 262873 263530 + 195 M 97 291 G 0 3 M 50 150 G 0 3 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262874 263530 195 + . gene_id 4 ; sequence AmOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262874 263530 . + . KQ414889.1 exonerate:protein2genome:local exon 262874 263530 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262874 263530 195 + . alignment_id 4 ; Query AmOr8 ; Align 262874 21 291 ; Align 263168 118 150 ; Align 263321 168 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 291 -> 381 Target range: 224323 -> 224658 292 : GluTrpGluAspSerAspAlaMetAlaIleIleAlaTyrValAlaLeuGlnThrThrC : 311 ||||||......||| !! !! ::! :!:.!!||| !! !|||! ! !:!: GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 312 : ysValPheGlyThrPheSerIleCysTyrValGlyGlnLeuLeuValAspGlu >>> : 329 ...|||... ||| ...||||||::!|||:!!|||:!!!.!!!:::: euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln++ 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggt... : 224437 330 : > Target Intron 1 >>>> SerGluSerValArgGlnAlaCysLysThrLeuL : 340 65 bp |||...::: |||!.!! ! ! !:!! ++CysGluLysIleGlyGlnValSerTyrMetIleA 224438 : ......................agtgtgaaaaaattggacaAGTGTCGTACATGATCG : 224533 341 : ysTrpTyrArgLeuProThrLysLysAlaArgSerLeuIleLeuLeuIleIleMetSe : 359 ! |||||||||||| !! !!!.||| !! !!!!! !||||||:!!||| ||||| spTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 224534 : ACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGATGTC : 224590 360 : rAsnTyrProIleLysValThrAlaGlyArgLeuValAspValSerLeuValThrPhe : 378 ||||! ! !!||||||:!!|||||||||!.!:!!|||!!::!!!!!|||..!|||||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThrPhe 224591 : CAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACTTTC : 224647 379 : ThrSerIle : 381 !..!:!! GlyAspVal 224648 : GGTGACGTA : 224658 vulgar: AmOr8 291 381 . KQ414889.1 224323 224658 + 170 M 37 111 5 0 2 I 0 61 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224658 170 + . gene_id 5 ; sequence AmOr8 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224658 170 + . alignment_id 5 ; Query AmOr8 ; Align 224324 292 111 ; Align 224500 329 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 280 -> 381 Target range: 214596 -> 215022 281 : IleThrCysIleLeuGlyTyrCysIleIleValGluTrpGluAspSerAspAlaMetA : 300 |||::: |||::: ::: |||::: ||||||.!....!:!:!! !! . IleSerAsnIleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrT 214597 : atatcaaacatcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAA : 214654 301 : laIleIleAlaTyrValAlaLeuGlnThrThrCysValPheGlyThrPheSerIleCy : 319 !!! !:!!.!!||||||!.!||| ! ! !:!! ...|||... ||| ...|| hrThrValThrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCy 214655 : CTACAGTAACTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttg : 214711 320 : sTyrValGlyGlnLeu{Le} >>>> Target Intron 1 >>>> {u}ValAsp : 327 ||||:!!|||:!!|||{:!} 123 bp {!}:!!.!. sTyrIleGlyGluLeu{Va}++ +-{l}LeuGln 214712 : ttaCATAGGCGAGCTT{GT}gt.........................at{G}TTACAA : 214858 328 : GluSerGluSerValArgGlnAlaCysLysThrLeuLysTrpTyrArgLeuProThrL : 347 :!!!!!:!!!.!||| !!:!!!.!! ! ! !:!!:!!||||||||||||||| !! GlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrArgLeuProGlyA 214859 : CAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACCGATTGCCAGGTA : 214918 348 : ysLysAlaArgSerLeuIleLeuLeuIleIleMetSerAsnTyrProIleLysValTh : 366 !.||| !! !!!!! !||||||:!!!!: !|||||||||! !!:!!||| !!|| snLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSerValLysPheTh 214919 : ACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATCCGTCAAATTCAC : 214975 367 : rAlaGlyArgLeuValAspValSerLeuValThrPheThrSerIle : 381 |||||||!.!:!!|||!!::!!|||:!! !||||||!:!|||:!! rAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214976 : AGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215022 vulgar: AmOr8 280 381 . KQ414889.1 214596 215022 + 155 M 44 132 S 0 2 5 0 2 I 0 119 3 0 2 S 1 1 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214597 215022 155 + . gene_id 6 ; sequence AmOr8 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214597 214730 . + . KQ414889.1 exonerate:protein2genome:local exon 214597 214730 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214731 214732 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214731 214853 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214852 214853 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 214854 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214854 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214597 215022 155 + . alignment_id 6 ; Query AmOr8 ; Align 214597 281 132 ; Align 214855 326 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 338 -> 391 Target range: 280306 -> 280465 339 : LeuLysTrpTyrArgLeuProThrLysLysAlaArgSerLeuIleLeuLeuIleIleM : 358 :!! ! ||||||||||||||| !|||||||||!:!.!!|||||||||:!!.!! !: IleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaV 280307 : ATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCG : 280364 359 : etSerAsnTyrProIleLysValThrAlaGlyArgLeuValAspValSerLeuValTh : 377 !!||||||! ! !!||||||:!!|||||||||!:!:!!:!!|||:!!|||||| !!: alSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSe 280365 : TGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAG : 280421 378 : rPheThrSerIleIleLysSerAlaValGlyTyrMetAsnIle : 391 !||| !|||:!:! !! ! ! !:!!..!||| :!!:!: rPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280422 : CTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: AmOr8 338 391 . KQ414889.1 280306 280465 + 128 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280307 280465 128 + . gene_id 7 ; sequence AmOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280307 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280307 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280307 280465 128 + . alignment_id 7 ; Query AmOr8 ; Align 280307 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 338 -> 391 Target range: 287093 -> 287252 339 : LeuLysTrpTyrArgLeuProThrLysLysAlaArgSerLeuIleLeuLeuIleIleM : 358 :!! ! ||||||||||||||| !|||! !|||!:!.!!|||||||||:!!.!! !: IleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaV 287094 : ATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCG : 287151 359 : etSerAsnTyrProIleLysValThrAlaGlyArgLeuValAspValSerLeuValTh : 377 !!||||||! ! !!||||||:!!|||||||||!:!:!!:!!|||:!!|||||| !!: alSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSe 287152 : TGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAG : 287208 378 : rPheThrSerIleIleLysSerAlaValGlyTyrMetAsnIle : 391 !||| !|||:!:! !! ! ! !:!!..!||| :!!:!: rPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 287209 : CTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 287252 vulgar: AmOr8 338 391 . KQ414889.1 287093 287252 + 122 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287094 287252 122 + . gene_id 8 ; sequence AmOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287094 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287094 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287094 287252 122 + . alignment_id 8 ; Query AmOr8 ; Align 287094 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 338 -> 381 Target range: 219542 -> 219671 339 : LeuLysTrpTyrArgLeuProThrLysLysAlaArgSerLeuIleLeuLeuIleIleM : 358 :!!:!!|||||||||||| !! !|||||| !! !!!! !:!!||| !||| !| IleGluTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaM 219543 : ATCGAATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTA : 219600 359 : etSerAsnTyrProIleLysValThrAlaGlyArgLeuValAspValSerLeuValTh : 377 ||||||||! ! !!||||||:!!|||||||||!.!:!!|||!!::!!|||:!! !|| etSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerTh 219601 : TGTCGAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCAC : 219657 378 : rPheThrSerIle : 381 |||||||..!:!: rPheThrAspVal 219658 : TTTTACCGACGTG : 219671 vulgar: AmOr8 338 381 . KQ414889.1 219542 219671 + 107 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219543 219671 107 + . gene_id 9 ; sequence AmOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219543 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219543 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219543 219671 107 + . alignment_id 9 ; Query AmOr8 ; Align 219543 339 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 339 -> 381 Target range: 235021 -> 235147 340 : LysTrpTyrArgLeuProThrLysLysAlaArgSerLeuIleLeuLeuIleIleMetS : 359 :!!||||||||||||||| !|||! |||! !.!!|||:!!:!!:!!||| !! !| GluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgS 235022 : GAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGT : 235079 360 : erAsnTyrProIleLysValThrAlaGlyArgLeuValAspValSerLeuValThrPh : 378 ||!:! !||||||:!!|||||||||!:!!!!:!!.!.:!!|||:!!!.!||||| erSerMetValIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPh 235080 : CGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATT : 235136 379 : eThrSerIle : 381 | !..!:!: eGlyAspVal 235137 : TGGCGATGTG : 235147 vulgar: AmOr8 339 381 . KQ414889.1 235021 235147 + 101 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 235022 235147 101 + . gene_id 10 ; sequence AmOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 235022 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 235022 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 235022 235147 101 + . alignment_id 10 ; Query AmOr8 ; Align 235022 340 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1341 Query range: 4 -> 405 Target range: 256616 -> 258738 5 : ThrAlaIleThrGluGluIleLysThrAsnSerAspTyrSerLeuGlnLeuAsnArgT : 24 .!!!.!:!!! ! !.!..!!|||!:! !!|||||||||||||||||||||||||||| AlaValValLysThrAsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgT 256617 : GCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGAT : 256674 25 : rpPheLeuLysProIleGlyAlaTrpProLeuPheSerThrThrThrLysPheGluLy : 43 |||||||||||||||||||||||||||||! !! |||:!!||||||! .!!|||:: rpPheLeuLysProIleGlyAlaTrpProProSerSerSerThrThrThrLeuGluAr 256675 : GGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCG : 256731 44 : sThrValSerLeuIleLeuAsnIleIleCysTyrAlaIleValIleLeuCysAlaThr : 62 !!.!||||||:!!:!!|||||||||:!!||||||!.! !:!!:!:!!! ! !! ! gAsnValSerIleValLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIle 256732 : AAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATA : 256788 63 : ProSerLeuMetGlnIleIleLeuAlaGluGluSerPheTyrLeuLysLeuLysThrL : 82 |||!!!|||:!:!!.:!!.!!|||! !!!:!!:|||||||||:::|||:::|||.... ProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrMetLysValLysAsnP 256789 : CCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatt : 256848 83 : euGlyProValSerHisTrpPheValSerThrValAsnTyrThrAlaLeuLeuMetLy : 101 ..||||||:!!|||||||||.!!:!!||| !!.!||||||||| !||||||:!::! heGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGl 256849 : tcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACA : 256905 102 : sSerLysAspIleArgTyrCysPheGluHisMetGluAlaAspTrpGlnThrIleLys : 120 !.!!|||||||||||||||||| !!||||||!!:|||.!!||||||::!! !:!:!:! nGlyLysAspIleArgTyrCysValGluHisIleGluThrAspTrpArgMetValArg 256906 : AGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGG : 256962 121 : ArgMetGluAspGlnGlnThrMetLeuLysAsnAlaLysPheGlyArgTyrValAlaA : 140 ||| !:!!|||||||||..!|||:!!|||||||||!:!||||||||||||||||||. ArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaT 256963 : AGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCA : 257022 141 : laSerCysAlaIlePheMetGlnGlyGlyIleLeuCysPheCysPheValThrIleLe : 159 !!! !|||||| !.!!||||||.!!|||:::...|||||| !:!! || hrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePheValSerSerAlaLe 257023 : CATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCT : 257079 160 : uThrThrGluThrIleGlnValGlyAsnGluThrArgValLeuHisValLeuProCys : 178 |!.!||||||! !|||!!.|||||||||||||||! !:!!:!!!..||||||||| ! uAsnThrGluIleIleHisValGlyAsnGluThrThrIleValArgValLeuProVal 257080 : GAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTT : 257136 179 : AlaValTyrLysLysLeuValAsnValGluGluAsnSerIleAsnIlePheMetLeuC : 198 .!!|||||||||||||||:!!||||||!!::!!!:! !!! ||| .!!:!!:!!! ThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrAsnGluIleValValP 257137 : ACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCT : 257196 199 : ysPheGlnPheValAlaAlaAlaIleAlaAsnSerSerThrValGlyIlePheSerLe : 217 !.!.||| ! !:!!:!! !||||||!.!!!!|||||||||.!!||||||||||| heMetGlnThrTrpSerSerIleIleAlaThrThrSerThrValSerIlePheSerLe 257197 : TTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCT : 257253 218 : uAlaAlaValLeuAlaAlaHisAlaTyrGlyGlnLeuSerValValMetValTrpIle : 236 ||||||||||!!!|||.!!||||||||||||||||||!!!|||:!!||| !|||||| uAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIle 257254 : CGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATA : 257310 237 : ThrGluPheValAsnGlnSerArgAsnGlnLysLysThrAspAspPheLysGluIleG : 256 |||||||||||||||:!!|||||||||!:::::|||||| ||||||:!!|||| ThrGluPheValAsnGluSerArgAsnArgGluLysThrPheProPheLysGlnIleG 257311 : ACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAG : 257370 257 : lyIleIleValGluArgHisLeuArgValLeu{As} >>>> Target Intron 1 : 267 ||:!:|||||||||!.!|||||||||||||||{!:} 76 bp lyValIleValGluHisHisLeuArgValLeu{Se}++ 257371 : GCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt.................... : 257407 268 : >>>> {n}PheIleThrTyrLeuGluAsnIleMetAsnArgIleTyrPheLeuGlu : 283 {!}||||||:!!|||:!!|||.!.:!:||||||||||||! !||||||||| ++{r}PheIleSerTyrIleGluGluValMetAsnArgIleCysPheLeuGlu 257408 : .....ag{T}TTCATATCATATATCGAGGAAGTGATGAACCGAATATGTTTTTTAGAG : 257527 284 : LeuPheArgCysThrMetIleIleCysIleValGlyTyrTyrIleLeuThr >>>> : 301 |||||||||||||||:!! !||||||!!::!!|||||||||||||||.!! LeuPheArgCysThrLeuAlaIleCysMetLeuGlyTyrTyrIleLeuAla++ 257528 : TTGTTTAGATGCACGCTGGCTATATGCATGCTGGGATACTACATTCTTGCGgt..... : 257583 302 : Target Intron 2 >>>> GluTrpAlaGluLysAsnValGlnAsnLeuThrThr : 312 684 bp ||||||:!! !:::::::::|||||||||:::::: ++GluTrpSerThrGlnAspIleGlnAsnLeuSerSer 257584 : ....................aggaATGGTCTACGCaagatattcaaaatttgagttcg : 258298 313 : TyrPheMetMetLeuLeuSerIleCysPheAsnIlePheIleIleCysTyrIleGlyG : 332 |||||||||!!:|||:!!|||::: ||||||||||||:::|||||||||||||||| TyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyG 258299 : taCTTTATGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTG : 258358 333 : luIleLeuThrGluGln >>>> Target Intron 3 >>>> CysMetLysIle : 341 ||||||||||||||||| 90 bp |||! !|||:!! luIleLeuThrGluGln++ ++CysLysLysVal 258359 : AAATATTAACAGAACAGgt.........................agTGCAAGAAAGTT : 258475 342 : GlyGluValValTyrMetThrAspTrpTyrTyrLeuProAspLysThrIleLeuAsnL : 361 |||!!:|||||||||||||||||||||||||||||||||||||||! !||||||:!!| GlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspL 258476 : GGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATT : 258535 362 : euIleLeuIleIleLeuArgSerThrValValValGlnIleThrAlaGlyLysLeuPh : 380 ||||||||:!!||| !||||||!:!|||||||||||||||||||||||||||...|| euIleLeuValIleAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePh 258536 : TAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctt : 258592 381 : eAsnMetSerIleTyrThrPheGlyAsp >>>> Target Intron 4 >>>> V : 390 |:::||||||||||||||||||.!!||| 69 bp | eHisMetSerIleTyrThrPheSerAsp++ ++V 258593 : tcacatGTCCATTTACACATTCAGCGATgt.........................agG : 258691 391 : alLeuLysThrAlaPheAlaTyrLeuAsnLeuLeuArgGlnMetThr : 405 ||:!!||||||:!!|||||||||||||||||||||||||||:!::!! alIleLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnValSer 258692 : TAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGTATCG : 258738 vulgar: AmOr27 4 405 . KQ414889.1 256616 258738 + 1341 M 262 786 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256617 258738 1341 + . gene_id 1 ; sequence AmOr27 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256617 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256617 257404 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256617 258738 1341 + . alignment_id 1 ; Query AmOr27 ; Align 256617 5 786 ; Align 257482 268 99 ; Align 258265 301 111 ; Align 258466 338 156 ; Align 258691 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1266 Query range: 6 -> 367 Target range: 259742 -> 262015 7 : IleThrGluGluIleLysThrAsnSerAspTyrSerLeuGlnLeuAsnArgTrpPheL : 26 :!! ! !....!!! !:!:!!||||||||||||||||||!!!||||||||||||| ValGluThrSerPheThrSerHisSerAspTyrSerLeuGlnPheAsnArgTrpPheL 259743 : GTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCCAATTTAATCGATGGTTCC : 259800 27 : euLysProIleGlyAlaTrpProLeuPheSerThrThrThrLysPheGluLysThrVa : 45 |||||||||||||||||||||||! !! |||:!!||||||!:!.!!||||||! !:! euLysProIleGlyAlaTrpProProSerSerSerThrThrArgLeuGluLysIleIl 259801 : TGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCACGACCAGACTCGAGAAGATCAT : 259857 46 : lSerLeuIleLeuAsnIleIleCysTyrAlaIleValIleLeuCysAlaThrProSer : 64 !|||:!!||||||! !.!!|||||||||::!! !:!!:!::!! ! !! !|||!!! eSerValIleLeuIlePheIleCysTyrSerThrIleLeuValThrLeuIleProCys 259858 : CTCTGTTATCCTGATCTTTATCTGCTACAGTACCATACTGGTCACCCTGATCCCGTGC : 259914 65 : LeuMetGlnIleIleLeuAlaGluGluSerPheTyrLeuLysLeuLysThrLeuGlyP : 84 :!!:!:!!.!!::!!|||! !:!!||||||!!.|||:!!||| !|||..!||||||| ValLeuHisMetLeuLeuGluLysGluSerLeuTyrMetLysThrLysValLeuGlyP 259915 : GTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGAAGGTGCTCGGTC : 259974 85 : roValSerHisTrpPheValSerThrValAsnTyrThrAlaLeuLeuMetLysSerLy : 103 ||:!!!!!||||||||||||.!! !:!!|||||||||.!!||||||:!!!:!.!!!: roLeuThrHisTrpPheValGlyCysIleAsnTyrThrThrLeuLeuLeuArgGlyAr 259975 : CTCTTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTGTTGAGAGGCAG : 260031 104 : sAspIleArgTyrCysPheGluHisMetGluAlaAspTrpGlnThrIleLysArgMet : 122 !||||||! ! !||| ! ||||||:!!||| !||||||::!! !|||! !||| ! gAspIleLeuSerCysValGluHisValGluAsnAspTrpArgIleIleThrArgGlu 260032 : AGACATACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGAATTATAACGAGGGAG : 260088 123 : GluAspGlnGlnThrMetLeuLysAsnAlaLysPheGlyArgTyrValAlaAlaSerC : 142 :!!||||||.!...!||||||!:! !!||||||||||||||||||||||||||||||| LysAspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgTyrValAlaAlaSerC 260089 : AAGGATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGATACGTCGCTGCCTCTT : 260148 143 : ysAlaIlePheMetGlnGlyGlyIleLeuCysPheCysPheValThrIleLeuThrTh : 161 ||||| !|||:!!|||||||||:!!||||||||||||!!.||||||:!:|||!:!|| ysAlaAlaPheValGlnGlyGlyValLeuCysPheCysLeuValThrValLeuSerTh 260149 : GCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTCACGGTGTTGAGTAC : 260205 162 : rGluThrIleGlnValGlyAsnGluThrArgValLeuHisValLeuProCysAlaVal : 180 ||||..!||||||||||||||||||||||||:!!:!!|||:!!||||||||||||||| rGluValIleGlnValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaVal 260206 : AGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTGCCGTGCGCGGTG : 260262 181 : TyrLysLysLeuValAsnValGluGluAsnSerIleAsnIlePheMetLeuCysPheG : 200 ||||||:!!|||:!!||||||.!.!!:!:! !!!!:||| .!!:!:||| ! ! | TyrLysGluLeuIleAsnValAsnAspSerProMetAsnGluIleValLeuValValG 260263 : TACAAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGATTGTTCTCGTCGTGC : 260322 201 : lnPheValAlaAlaAlaIleAlaAsnSerSerThrValGlyIlePheSerLeuAlaAl : 219 ||||||||:!!!.! !|||!.!||||||||||||||||||||||||||||||||||| lnPheValSerGlyPheIleValAsnSerSerThrValGlyIlePheSerLeuAlaAl 260323 : AATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTTCAGTCTCGCGGC : 260379 220 : aValLeuAlaAlaHisAlaTyrGlyGlnLeuSerValValMetValTrpIleThrGlu : 238 |||||||.!!|||||||||! !|||||||||!:!|||:!!|||! !|||||||||||| aValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMetGluTrpIleThrGlu 260380 : TGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAATGGATCACGGAG : 260436 239 : PheValAsnGlnSerArgAsnGlnLysLysThrAspAspPheLysGluIleGlyIleI : 258 ||||||:!!:!!|||||||||::!||||||! !! ! !|||||||||||||||:!:| PheValAspGluSerArgAsnArgLysLysLysAlaProPheLysGluIleGlyValI 260437 : TTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTCCTTTCAAGGAGATCGGAGTGA : 260496 259 : leValGluArgHisLeuArgValLeu{As} >>>> Target Intron 1 >>>> : 267 ||||||||!.!|||||||||!.!|||{!.} 257 bp leValGluHisHisLeuArgAlaLeu{Th}++ + 260497 : TTGTCGAACATCATTTGAGAGCACTC{AC}gt.........................a : 260780 268 : {n}PheIleThrTyrLeuGluAsnIleMetAsnArgIleTyrPheLeuGluLeuPhe : 285 {!}||||||:!! !:!!|||:!!:!:||||||||||||! !||||||||||||||| +{r}PheIleSerArgIleGluAspValMetAsnArgIleCysPheLeuGluLeuPhe 260781 : g{C}TTCATATCGCGTATCGAGGATGTGATGAACCGGATATGCTTCCTGGAGTTGTTC : 260834 286 : ArgCysThrMetIleIleCysIleValGlyTyrTyrIleLeuThr >>>> Target : 301 |||||||||:!! !||||||:!!:!!|||||||||||||||! ! 8 ArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeuMet++ 260835 : AGGTGCACTCTGGATATATGTCTACTTGGCTACTATATTCTTATGgt........... : 260884 302 : Intron 2 >>>> GluTrpAlaGluLysAsnValGlnAsnLeuThrThrTyrPhe : 314 52 bp ||||||||||||:!!:!!:!!|||||||||:!!||||||||| ++GluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPhe 260885 : ..............agGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTC : 261773 315 : MetMetLeuLeuSerIleCysPheAsnIlePheIleIleCysTyrIleGlyGluIleL : 334 |||||||||:!!:!!||||||||||||:!!|||||||||||||||||||||||||||| MetMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleL 261774 : ATGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATAC : 261833 335 : euThrGluGln >>>> Target Intron 3 >>>> CysMetLysIleGlyGlu : 343 ||||||||||| 81 bp ||| !|||:!!|||!!: euThrGluGln++ ++CysSerLysValGlyAsp 261834 : TAACGGAACAGgt.........................agTGCTCGAAAGTTGGTGAC : 261941 344 : ValValTyrMetThrAspTrpTyrTyrLeuProAspLysThrIleLeuAsnLeuIleL : 363 |||||||||||||||:!!|||||||||||||||||||||!:!||||||:!!||||||| ValValTyrMetThrAsnTrpTyrTyrLeuProAspLysSerIleLeuAspLeuIleL 261942 : GTTGTTTACATGACAAACTGGTATTATTTACCTGATAAAAGTATCCTTGATTTGATTT : 262001 364 : euIleIleLeuArg : 367 |||||||| !||| euIleIleAlaArg 262002 : TGATCATTGCACGA : 262015 vulgar: AmOr27 6 367 . KQ414889.1 259742 262015 + 1266 M 260 780 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259743 262015 1266 + . gene_id 2 ; sequence AmOr27 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259743 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259743 260524 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262015 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262015 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259743 262015 1266 + . alignment_id 2 ; Query AmOr27 ; Align 259743 7 780 ; Align 260783 268 99 ; Align 261734 301 111 ; Align 261926 338 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 968 Query range: 6 -> 300 Target range: 274353 -> 275309 7 : IleThrGluGluIleLysThrAsnSerAspTyrSerLeuGlnLeuAsnArgTrpPheL : 26 :!!|||! !.!..!! ! !:! !|||||||||||||||||||||||||||||||||| ValThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheL 274354 : GTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCT : 274411 27 : euLysProIleGlyAlaTrpProLeuPheSerThrThrThrLysPheGluLysThrVa : 45 |||||||||||||||||||||||||| !||| !!|||||||||||||||::!! !:! euLysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLe 274412 : TGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCT : 274468 46 : lSerLeuIleLeuAsnIleIleCysTyrAlaIleValIleLeuCysAlaThrProSer : 64 !|||! !:::||| ...:::||||||..!.!!:!!:!!! ! !!.!! !|||||| uSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSer 274469 : TTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGC : 274525 65 : LeuMetGlnIleIleLeuAlaGluGluSerPheTyrLeuLysLeuLysThrLeuGlyP : 84 :!!.!.!!.|||||||||!.!!!:||||||.!!:!!|||||||||||| !||||||| IlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyP 274526 : ATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTC : 274585 85 : roValSerHisTrpPheValSerThrValAsnTyrThrAlaLeuLeuMetLysSerLy : 103 ||:!!.!!|||||||||:!!.!! !:!!|||||||||.!!||||||:!::::||||| roLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLy 274586 : CTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAA : 274642 104 : sAspIleArgTyrCysPheGluHisMetGluAlaAspTrpGlnThrIleLysArgMet : 122 |!!:|||||| !||| ! |||||||||:!!.!!||||||::!! !:!:! ||| ! sGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgPro 274643 : AGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCG : 274699 123 : GluAspGlnGlnThrMetLeuLysAsnAlaLysPheGlyArgTyrValAlaAlaSerC : 142 ||||||||||||..!||||||||||||||||||.!!||||||||||||||| !! !| GluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheC 274700 : GAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCT : 274759 143 : ysAlaIlePheMetGlnGlyGlyIleLeuCysPheCysPheValThrIleLeuThrTh : 161 ||||| ||||||||| !!|||:!!||||||!:!||| ! :!!||| !!!|||! ysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMe 274760 : GTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTAT : 274816 162 : rGluThrIleGlnValGlyAsnGluThrArgValLeuHisValLeuProCysAlaVal : 180 !:!!|||:!!|||||||||||||||||||||..!:!!|||:!!||||||||| !!.! tGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAla 274817 : GCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCT : 274873 181 : TyrLysLysLeuValAsnValGluGluAsnSerIleAsnIlePheMetLeuCysPheG : 200 |||||||||:!!||| |||!!: !!:! !!! ||| .!!:!:|||..!! | TyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerG 274874 : TACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGC : 274933 201 : lnPheValAlaAlaAlaIleAlaAsnSerSerThrValGlyIlePheSerLeuAlaAl : 219 ||||||||:!!!.! !|||!.!|||||||||.!!|||||| !|||||||||||||| lnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAl 274934 : AATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGC : 274990 220 : aValLeuAlaAlaHisAlaTyrGlyGlnLeuSerValValMetValTrpIleThrGlu : 238 ||||!!!||||||||||||||||||||||||||||||:!!|||:!!|||||||||||| aValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGlu 274991 : CGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAG : 275047 239 : PheValAsnGlnSerArgAsnGlnLysLysThrAspAspPheLysGluIleGlyIleI : 258 |||||||||!!.||||||:!:|||...|||... |||...|||||||||:!:: PheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValV 275048 : TTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGG : 275107 259 : leValGluArgHisLeuArgValLeu{As} >>>> Target Intron 1 >>>> : 267 !!||||||!.!|||||||||||||||{!:} 74 bp alValGluHisHisLeuArgValLeu{Se}++ + 275108 : TTGTCGAACATCATCTGAGGGTACTC{AG}gt.........................a : 275208 268 : {n}PheIleThrTyrLeuGluAsnIleMetAsnArgIleTyrPheLeuGluLeuPhe : 285 {!}||||||.!! !:!!|||:!!:!:||||||||||||! !|||:!!||||||||| +{r}PheIleAlaArgIleGluAspValMetAsnArgIleCysPheMetGluLeuPhe 275209 : g{T}TTCATAGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAATTGTTC : 275262 286 : ArgCysThrMetIleIleCysIleValGlyTyrTyrIleLeuThr : 300 !:!||||||:!! !!!:|||!!::!!|||||||||||||||||| LysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleLeuThr 275263 : AAGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTCTCACG : 275309 vulgar: AmOr27 6 300 . KQ414889.1 274353 275309 + 968 M 260 780 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274354 275309 968 + . gene_id 3 ; sequence AmOr27 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274354 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274354 275135 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275309 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275309 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274354 275309 968 + . alignment_id 3 ; Query AmOr27 ; Align 274354 7 780 ; Align 275211 268 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 895 Query range: 5 -> 300 Target range: 266604 -> 267558 6 : AlaIleThrGluGluIleLysThrAsnSerAspTyrSerLeuGlnLeuAsnArgTrpP : 25 !.!||| !! !.!.:!!!!.!:! ||||||||||||||||||||||||||||||| ValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpP 266605 : GTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCCTGCAATTGAATCGATGGT : 266662 26 : heLeuLysProIleGlyAlaTrpProLeuPheSerThrThrThrLysPheGluLysTh : 44 ||||||||||||||||||||||||||! !!!.||| !|||:!!|||.!!|||::!! heLeuLysProIleGlyAlaTrpProProLeuSerLeuThrSerLysLeuGluArgIl 266663 : TCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCACATCTAAACTCGAACGAAT : 266719 45 : rValSerLeuIleLeuAsnIleIleCysTyrAlaIleValIleLeuCysAlaThrPro : 63 !||||||! ! !|||! !:!!|||||||||..! !:!!:!:!!! !!.!! !||| eValSerTyrAlaLeuIleValIleCysTyrCysSerIleLeuPheThrValIlePro 266720 : CGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATACTGTTCACCGTAATCCCT : 266776 64 : SerLeuMetGlnIleIleLeuAlaGluGluSerPheTyrLeuLysLeuLysThrLeuG : 83 !!!|||.!.!!.:!!:!!|||! !!!:||||||.!! ! !|||:!!|||..!!!!| CysLeuPheHisLeuValLeuGluAspGluSerIleArgThrLysValLysValPheG 266777 : TGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTACGAAAGTGAAGGTGTTCG : 266836 84 : lyProValSerHisTrpPheValSerThrValAsnTyrThrAlaLeuLeuMetLysSe : 102 |||||:!!|||||||||||||||.!! !:!!|||||||||.!!||||||:!::::|| lyProLeuSerHisTrpPheValGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSe 266837 : GTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACACCACACTGTTGCTACGCAG : 266893 103 : rLysAspIleArgTyrCysPheGluHisMetGluAlaAspTrpGlnThrIleLysArg : 121 ||||!!:|||||| !||| ! |||||||||:!!.!!||||||::!! !:!:! ||| rLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArg 266894 : CAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGATTGGAGGATCGTGACCAGA : 266950 122 : MetGluAspGlnGlnThrMetLeuLysAsnAlaLysPheGlyArgTyrValAlaAlaS : 141 !||||||:!!|||..!|||||||||||||||!:!.!!|||||||||:!!||| !! ProGluAspLysGlnValMetLeuLysAsnAlaArgIleGlyArgTyrIleAlaIleP 266951 : CCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCGGTCGTTACATTGCTATAT : 267010 142 : erCysAlaIlePheMetGlnGlyGlyIleLeuCysPheCysPheValThrIleLeuTh : 160 !|||||| ||||||||| !!|||:!!||| !!!:!||| ! :!!||| !!!|| heCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCysValIleThrAlaPheTh 267011 : TCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGTGATAACGGCGTTCAC : 267067 161 : rThrGluThrIleGlnValGlyAsnGluThrArgValLeuHisValLeuProCysAla : 179 |! !:!!|||:!::!!||||||||||||||||||:!!:!!|||:!!|||||||||||| rMetGlnThrValGluValGlyAsnGluThrArgIleValHisLeuLeuProCysAla 267068 : TATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTACATCTGTTGCCCTGTGCA : 267124 180 : ValTyrLysLysLeuValAsnValGluGluAsnSerIleAsnIlePheMetLeuCysP : 199 ||||||||||||:!!:!! |||!!: !:! !!! ||| .!!:!:||| !! ValTyrLysLysMetIleAlaValAspThrSerProThrAsnGluIleValLeuValS 267125 : GTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGAACGAGATTGTCCTTGTTT : 267184 200 : heGlnPheValAlaAlaAlaIleAlaAsnSerSerThrValGlyIlePheSerLeuAl : 218 |||||||||:!!!.! !|||!.!|||||||||..!|||||| !||||||||||| erGlnPheValSerGlyPheIleValAsnSerSerValValGlyAlaPheSerLeuAl 267185 : CACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCGGTGCTTTCAGCCTTGC : 267241 219 : aAlaValLeuAlaAlaHisAlaTyrGlyGlnLeuSerValValMetValTrpIleThr : 237 |||||||!!!||||||||||||! !|||||||||||||||:!!|||:!!||||||! ! aAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerValLeuMetMetTrpIleLys 267242 : CGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTGATGATGTGGATCAAG : 267298 238 : GluPheValAsnGlnSerArgAsnGlnLysLysThrAspAspPheLysGluIleGlyI : 257 ||||||||||||!:!||||||:!!...!!.|||!.!! ! !||| ! :!!||||||: GluPheValAsnArgSerArgAspSerAsnLysAsnValCysPheAspLysIleGlyV 267299 : GAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTTGCTTCGATAAGATTGGCG : 267358 258 : leIleValGluArgHisLeuArgValLeu{As} >>>> Target Intron 1 >> : 267 !::!!||||||!.!|||||||||||||||{!:} 69 bp alValValGluHisHisLeuArgValLeu{Se}++ 267359 : TGGTCGTTGAACATCATCTGAGAGTTTTG{AG}gt....................... : 267392 268 : >> {n}PheIleThrTyrLeuGluAsnIleMetAsnArgIleTyrPheLeuGluLeu : 284 {!}||||||.!! !:!!|||!:!:!!|||!:!..!|||! !|||:!!|||||| ++{r}PheIleAlaArgIleGluSerValMetSerGluIleCysPheMetGluLeu 267393 : ..ag{C}TTCATAGCACGTATCGAAAGTGTAATGAGCGAAATTTGCTTCATGGAGTTG : 267508 285 : PheArgCysThrMetIleIleCysIleValGlyTyrTyrIleLeuThr : 300 |||!:!||||||||| !||||||:!::!!.!!||||||||||||||| PheLysCysThrMetAspIleCysValLeuSerTyrTyrIleLeuThr 267509 : TTCAAGTGTACTATGGATATATGCGTGCTTAGCTATTATATCCTTACG : 267558 vulgar: AmOr27 5 300 . KQ414889.1 266604 267558 + 895 M 261 783 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266605 267558 895 + . gene_id 4 ; sequence AmOr27 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266605 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266605 267389 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267558 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267558 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266605 267558 895 + . alignment_id 4 ; Query AmOr27 ; Align 266605 6 783 ; Align 267460 268 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 776 Query range: 0 -> 390 Target range: 232411 -> 235147 1 : MetMetAsnGlnThrAlaIleThrGluGluIleLysThrAsnSerAspTyrSerLeuG : 20 |||:!!:!!..!:!! ! !||| !.!. !! ! !:!!! !!!:||||||:!!| MetLeuAspSerSerArgAspThrLeuAsnAlaThrArgAspTyrGluTyrSerIleG 232412 : ATGCTGGACTCGTCCCGCGACACGTTGAACGCTACGCGAGACTACGAGTACAGCATCC : 232469 21 : lnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuPheSerThrThrTh : 39 ||:!!|||||||||||||||! !|||!!:||||||||||||! ! !!!!! !|||:! lnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgValThrGluThrSe 232470 : AGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTGTTACAGAGACCTC : 232526 40 : rLysPheGluLysThrValSerLeuIleLeuAsnIleIleCysTyrAlaIleValIle : 58 !!:! !:!!:!! !:!!:!! !:!:|||!..:!!! !|||:!!:!!:!::!!||| rArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHisSerLeuMetIle 232527 : GAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCATTCTCTGATGATC : 232583 59 : LeuCysAlaThrProSerLeuMetGlnIleIleLeuAlaGluGluSerPheTyrLeuL : 78 ! !! !..!|||!!!:!!:!! |||:!:!!!! !!!: !|||.!. ! !! SerSerIleValProCysIleLeuPheIleLeuPheGluAspThrSerLeuGluGluA 232584 : TCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACGAGCCTAGAGGAAA : 232643 79 : ysLeuLysThrLeuGlyProValSerHisTrpPheValSerThrValAsnTyrThrAl : 97 :!:!!|||:!!:!!||||||:!!||||||!::.!.:!!.!! !:!!|||||| !.. rgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluLeuAsnTyrCysCy 232644 : GGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAATTGAATTATTGCTG : 232700 98 : aLeuLeuMetLysSerLysAspIleArgTyrCysPheGluHisMetGluAlaAspTrp : 116 !|||||| |||:!!!!.||||||! !|||||| ! |||!!.:!!:!! !|||||| sLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnValLysGlnAspTrp 232701 : CTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGTGAAACAGGACTGG : 232757 117 : GlnThrIleLysArgMetGluAspGlnGlnThrMetLeuLysAsnAlaLysPheGlyA : 136 !:!!.!:!!|||!:! ! !!!::.!. !||||||||||||||||||.!!|||| ArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsnAlaLysLeuGlyA 232758 : CGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAACGCGAAACTTGGAC : 232817 137 : rgTyrValAlaAlaSerCysAlaIlePheMetGlnGlyGlyIleLeuCysPheCysPh : 155 ||! :!!|||..!! !..!|||.!!! !|||!!. !|||:!! !! ! ! .! rgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValGlySerAspGluIl 232818 : GTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCGGCTCCGACGAAAT : 232874 156 : eValThrIleLeuThrThrGluThrIleGlnValGlyAsnGluThrArgValLeuHis : 174 .|||||| !||| !! !...|||.!! ! ||||||||||||!:! ! !:!!:!! eValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSerTyrSerMetTyr 232875 : AGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAGTTACTCGATGTAC : 232931 175 : ValLeuProCysAlaValTyrLysLysLeuValAsnValGluGluAsnSerIleAsnI : 194 !|||||||||.!! !!|||! !||||||:!!:!!..!..! !:! !!! ||| ProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPheSerProThrAsnG 232932 : CCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTCAGTCCGACGAACG : 232991 195 : lePheMetLeuCysPheGlnPheValAlaAlaAlaIleAlaAsnSerSerThrValGl : 213 .!.|||!!! !.!.|||! !:!!:!!!.! !|||!.!|||||| !|||||||| luIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnSerValThrValGl 232992 : AGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGG : 233048 214 : yIlePheSerLeuAlaAlaValLeuAlaAlaHisAlaTyrGlyGlnLeuSerValVal : 232 | !! !.!!|||!.!|||||||||||| !||||||! !|||||||||!:!|||||| yAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGlnLeuAsnValVal 233049 : AGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACAGCTGAACGTGGTG : 233105 233 : MetValTrpIleThrGluPheValAsnGlnSerArgAsnGlnLysLysThrAspAspP : 252 ||| ! :!: !!!:!!.|||:!! :!!!:!...|||:!!:!!! !! !! MetSerLysLeuAspAspLeuValAsp---AlaLysGlyGlnGluGluArgValAlaG 233106 : ATGTCGAAATTGGACGATTTGGTGGAC---GCGAAAGGGCAGGAGGAGAGAGTCGCGC : 233162 253 : heLysGluIleGlyIleIleValGluArgHisLeuArgValLeu{As} >>>> Tar : 267 !:!:!!:!!|||.!!|||||||||!.!|||||||||..!|||{!:} lnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeu{Se}++ 233163 : AGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTA{AG}gt........ : 233211 268 : get Intron 1 >>>> {n}PheIleThrTyrLeuGluAsnIleMetAsnArgIle : 279 1315 bp {!}|||||| ! !!:!!||||||:!!||||||! !||| ++{r}PheIleArgAsnIleGluAsnValMetAsnLeuIle 233212 : .................ag{T}TTTATACGGAATATAGAGAACGTTATGAACCTAATA : 234558 280 : TyrPheLeuGluLeuPheArgCysThrMetIleIleCysIleValGlyTyrTyrIleL : 299 ! !.!.:!!|||||| ! !!||||||:!!! !!!:|||!!::!!! !||||||:!!| CysLeuValGluLeuValGlyCysThrLeuAsnMetCysMetLeuGluTyrTyrLeuL 234559 : TGCCTGGTTGAGTTGGTAGGATGCACGTTGAACATGTGCATGCTCGAGTATTATTTAC : 234618 300 : euThr >>>> Target Intron 2 >>>> GluTrpAlaGluLysAsnValGln : 308 ||||| 189 bp ||||||::: ::: euThr++ ++---------GluLysSerLysGlu 234619 : TCACGgt.........................ag---------GAAAAgtcgaaggaa : 234825 309 : AsnLeuThrThrTyrPheMetMetLeuLeuSerIleCysPheAsnIlePheIleIleC : 328 ...|||.!!:!!||| !!!!::!!! !:!!|||!!: |||||||||||||||...| LysLeuAlaSerTyrValIleValTyrValSerMetThrPheAsnIlePheIlePheC 234826 : aaattagCTTCATACGTCATCGTGTACGTGTCCATGACATTtaatatattcatatttt : 234885 329 : ysTyrIleGlyGluIleLeuThrGluGln >>>> Target Intron 3 >>>> : 338 ||||||||||||||! |||||||||||| 74 bp ysTyrIleGlyGluThrLeuThrGluGln++ ++ 234886 : gttACATCGGAGAGACGCTTACAGAGCAGgt.........................ag : 234987 339 : CysMetLysIleGlyGluValValTyrMetThrAspTrpTyrTyrLeuProAspLysT : 357 |||! |||:!!|||||| !||||||||||||!!:|||||| |||||| !!|||| CysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProHisLysT 234988 : TGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATAAAA : 235046 358 : hrIleLeuAsnLeuIleLeuIleIleLeuArgSerThrValValValGlnIleThrAl : 376 || !|||..!|||:!!:!!||||||! !||||||!:!:!!|||:!!:!!|||||||| hrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAl 235047 : CTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCACCGC : 235103 377 : aGlyLysLeuPheAsnMetSerIleTyrThrPheGlyAspVal : 390 |||||||!!!.!..!.||||||:!! ||||||||||||||| aGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235104 : TGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: AmOr27 0 390 . KQ414889.1 232411 235147 + 776 M 241 723 G 1 0 M 24 72 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 33 99 5 0 2 I 0 185 3 0 2 G 3 0 M 34 102 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232412 235147 776 + . gene_id 5 ; sequence AmOr27 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232412 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232412 233208 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232412 235147 776 + . alignment_id 5 ; Query AmOr27 ; Align 232412 1 723 ; Align 233135 243 72 ; Align 234525 268 99 ; Align 234813 304 102 ; Align 234989 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 765 Query range: 0 -> 266 Target range: 262801 -> 263599 1 : MetMetAsnGlnThrAlaIleThrGluGluIleLysThrAsnSerAspTyrSerLeuG : 20 :!::!:!....!|||! ! ! !|||....!! !:! !|||||||||||||||| ValValThrMetThrAspAspLeuGluSerPheGlySerLeuSerAspTyrSerLeuG 262802 : GTTGTCACGATGACCGACGACCTGGAAAGTTTCGGCAGTCTCAGCGACTACAGCCTGC : 262859 21 : lnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuPheSerThrThrTh : 39 ||:!!|||||||||.!.|||||||||||||||||||||||||||! !:!!:!!! !:! lnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerAlaSerIleSe 262860 : AGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCGCCTCGATCTC : 262916 40 : rLysPheGluLysThrValSerLeuIleLeuAsnIleIleCysTyrAlaIleValIle : 58 !!:!.!.|||::!! !:!!!!!!!!:!!|||! !:!!:!!||||||..!:!!:!!:!! rArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCysLeuIleLeu 262917 : AAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTGTCTCATACTA : 262973 59 : LeuCysAlaThrProSerLeuMetGlnIleIleLeuAlaGluGluSerPheTyrLeuL : 78 ! ! !!.!! !||||||:!!:!:!!.|||:!!|||! !! |||!:!|||:!!:!!| SerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsnPheHisMetL 262974 : TCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAATTTCCATATGA : 263033 79 : ysLeuLysThrLeuGlyProValSerHisTrpPheValSerThrValAsnTyrThrAl : 97 |||||:!!..!|||||||||:!!.!!!!.|||||||||.!!! !:!!||||||||| ysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleAsnTyrThrTr 263034 : AGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCAATTACACCTG : 263090 98 : aLeuLeuMetLysSerLysAspIleArgTyrCysPheGluHisMetGluAlaAspTrp : 116 !||||||:!: ! ||||||||||||!:! !||| ! :!!|||:!!:!!! !|||||| pLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGlnGluAspTrp 263091 : GTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCAGGAAGACTGG : 263147 117 : GlnThrIleLysArgMetGluAspGlnGlnThrMetLeuLysAsnAlaLysPheGlyA : 136 ! !:!:! |||:!!|||||||||!::! !||||||||||||||||||!:!|||| CysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAlaLysTyrGlyA 263148 : TGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCGAAATACGGCC : 263207 137 : rgTyrValAlaAlaSerCysAlaIlePheMetGlnGlyGlyIleLeuCysPheCysPh : 155 ||||||||||||||||||||||||||||||||||| !.!!|||:!!||| |||.! rgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetCysLysCysLe 263208 : GCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGTGCAAGTGCCT : 263264 156 : eValThrIleLeuThrThrGluThrIleGlnValGlyAsnGluThrArgValLeuHis : 174 .|||||| !!!||||||:!!..!|||:!!! !|||||||||||||||:!!|||!.! uValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrArgIleLeuArg 263265 : AGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAGAATTCTACGT : 263321 175 : ValLeuProCysAlaValTyrLysLysLeuValAsnValGluGluAsnSerIleAsnI : 194 :!!||||||||| !!|||||||||:!!:!!:!! |||!!: !||| !!! ||| MetLeuProCysProValTyrLysGluIleIleProValAspThrAsnProThrAsnG 263322 : ATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAATCCGACGAACG : 263381 195 : lePheMetLeuCysPheGlnPheValAlaAlaAlaIleAlaAsnSerSerThrValGl : 213 .!!.!.|||..! ||||||:!!:!!!.! !|||!.!!.!:!!!!!|||||||| luIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaThrThrValGl 263382 : AGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGACAACTGTCGG : 263438 214 : yIlePheSerLeuAlaAlaValLeuAlaAlaHisAlaTyrGlyGlnLeuSerValVal : 232 | !|||.!!:!!.!!||||||!!!|||!.!||||||! !|||||||||!:!|||:!! yAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLeuAsnValLeu 263439 : TGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTTGAACGTGTTG : 263495 233 : MetValTrpIleThrGluPheValAsnGlnSerArgAsnGlnLysLysThrAspAspP : 252 ||| !||||||||||||||||||||||||||||||:!!:!!!!.|||!.! ! !!| MetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLysAsnLeuTyrP 263496 : ATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAGAATCTTTATT : 263555 253 : heLysGluIleGlyIleIleValGluArgHisLeuArgValLeu : 266 ||! |||||||||:!:|||||||||!.!||||||||||||||| heThrGluIleGlyValIleValGluHisHisLeuArgValLeu 263556 : TTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTG : 263599 vulgar: AmOr27 0 266 . KQ414889.1 262801 263599 + 765 M 266 798 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262802 263599 765 + . gene_id 6 ; sequence AmOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262802 263599 . + . KQ414889.1 exonerate:protein2genome:local exon 262802 263599 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262802 263599 765 + . alignment_id 6 ; Query AmOr27 ; Align 262802 1 798 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 633 Query range: 2 -> 282 Target range: 236807 -> 237644 3 : AsnGlnThrAlaIleThrGlu<->GluIleLysThrAsnSerAspTyrSerLeuGlnL : 21 :!!:!!|||!.!:!!|||||| .!.|||! .!!!:!||||||||||||||||||! AspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnT 236808 : GACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGT : 236865 22 : euAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuPheSerThrThrThrLy : 40 !||||||||| :!!||| !||||||.!!||||||! !|||||| :!!!! rpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSer------SerAs 236866 : GGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCG------TCGAA : 236916 41 : sPheGluLysThrValSerLeuIleLeuAsnIleIleCysTyrAlaIleValIleLeu : 59 ..!!|||!:!!.!:!!|||! !|||||||||:!:|||||||||.!! !:!!:!!!!! nLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPhe 236917 : CCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTC : 236973 60 : CysAlaThrProSerLeuMetGlnIleIleLeuAlaGluGluSerPheTyrLeuLysL : 79 ! !! !|||!!!! !:!!!!.:!!!!:|||! !:!!! !!!!|||||| !|||: SerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysV 236974 : TCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAG : 237033 80 : euLysThrLeuGlyProValSerHisTrpPheValSerThrValAsnTyrThrAlaLe : 98 !!|||! !|||||| !!:!!||||||||| ! !!!!!! !:!!!:!|||||| !|| alLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLe 237034 : TGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCT : 237090 99 : uLeuMetLysSerLysAspIleArgTyrCysPheGluHisMetGluAlaAspTrpGln : 117 ||||:!!::! !!||| !||||||:!!! !|||.!.|||||||||.!!||||||::! uLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArg 237091 : GTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGA : 237147 118 : ThrIleLysArgMetGluAspGlnGlnThrMetLeuLysAsnAlaLysPheGlyArgT : 137 |||! ||| ||| ::::::...||||||||| !!|||||||||.!!|||| ThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgT 237148 : ACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGAT : 237207 138 : yrValAlaAlaSerCysAlaIlePheMetGlnGlyGlyIleLeuCysPheCysPheVa : 156 ||!.!||| !||||||.!!||||||!!:!!.|||||||||||| ! !:!||| !!:! yrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMe 237208 : ACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTAT : 237264 157 : lThrIleLeuThrThrGluThrIleGlnValGlyAsnGluThrArgValLeuHisVal : 175 !||| ! !|||||| !..!:!! !|||||||||:!!|||! !:!!|||!.!||| tThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLeuArgVal 237265 : GACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGCGTG : 237321 176 : LeuProCysAlaValTyrLysLysLeuValAsnValGluGluAsnSerIleAsnIleP : 195 ||||||! !!:!!|||||| !|||:!! |||!!: !|||!!!!!:||| !. LeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnAspI 237322 : CTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGACA : 237381 196 : heMetLeuCysPheGlnPheValAlaAlaAlaIleAlaAsnSerSerThrValGlyIl : 214 !!:!::!!! ! ||||||:!!:!!!.! !|||||||||!:!|||.!!:!!.!!:! leValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSerVa 237382 : TCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAGTGT : 237438 215 : ePheSerLeuAlaAlaValLeuAlaAlaHisAlaTyrGlyGlnLeuSerValValMet : 233 !.!.||||||.!!::!!.!|||.!!:!!||||||! !||||||||||||||||||||| lIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValValMet 237439 : TATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTTATG : 237495 234 : ValTrpIleThrGluPheValAsnGlnSerArgAsnGlnLysLysThrAspAspPheL : 253 :!!! !||| !!!:||||||!:!:!!:!!|||..!::! !||| !||| !!||| LeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAspHisPheA 237496 : TTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATCATTTCG : 237555 254 : ysGluIleGlyIleIleValGluArgHisLeuArgValLeuAsnPheIleThrTyrLe : 272 ! |||||| !! !|||||||||..!|||||||||||||||!!.! :!! !! || spGluIleProThrIleValGluGluHisLeuArgValLeuLys***ValCysLeuLe 237556 : ACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAGTATGTTTGTT : 237612 273 : uGluAsnIleMetAsnArgIleTyrPheLeu : 282 |!!: |||:!! ! ! ! |||||| uAspLeuIleLeuLeuMetGlyValPheLeu 237613 : GGATTTGATTTTGCTGATGGGTGTGTTTCTC : 237644 vulgar: AmOr27 2 282 . KQ414889.1 236807 237644 + 633 M 7 21 G 0 3 M 27 81 G 2 0 M 244 732 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236808 237644 633 + . gene_id 7 ; sequence AmOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236808 237644 . + . KQ414889.1 exonerate:protein2genome:local exon 236808 237644 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236808 237644 633 + . alignment_id 7 ; Query AmOr27 ; Align 236808 3 21 ; Align 236832 10 81 ; Align 236913 39 732 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 587 Query range: 12 -> 405 Target range: 284511 -> 287338 13 : ThrAsnSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaT : 32 |||:!!!!! ||||||:!!|||:!!|||||||||||||||||||||||||||!.!| ThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValT 284512 : ACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTAT : 284569 33 : rpProLeuPheSerThrThrThrLysPheGluLysThrValSerLeuIleLeuAsnIl : 51 |||||||| ! ! !..!|||! !!.||||||! ! !|||:!!:!!||| :! rpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLe 284570 : GGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTT : 284626 52 : eIle<->CysTyrAlaIleValIleLeuCysAlaThrProSerLeuMetGlnIleIle : 69 !||| |||!:! !|||! !.!!|||! !.! !! !:!!||| !:!::!! uIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeu 284627 : AATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTC : 284683 70 : LeuAlaGluGluSerPheTyrLeuLysLeuLysThrLeuGlyProValSerHisTrpP : 89 ! ! ! ..!.!! !! !|||:!!|||! !:!!||||||:!!||| !!! . AspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysM 284684 : GACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCA : 284743 90 : heValSerThrValAsnTyrThrAlaLeuLeuMetLysSerLysAspIleArgTyrCy : 108 !.:!!:!!.!!:!!!!.||| ! !|||:!! !:::.!! ! ||| !! ! || etMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCy 284744 : TGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATG : 284800 109 : sPheGluHisMetGluAlaAsp{Tr} >>>> Target Intron 1 >>>> {p} : 116 | ! :!! !!!!:...||||||{||} 1012 bp {|} sValLysAspIleArgAlaAsp{Tr}++ +-{p} 284801 : CGTGAAGGACATTCGTGCGGAC{TG}gt.........................ac{G} : 285838 117 : GlnThrIleLysArgMetGluAspGlnGlnThrMetLeuLysAsnAlaLysPheGlyA : 136 ! :!! !!..::: |||::::::::: ||| ! ! !:!|||!:!.!!|||| LeuSerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyA 285839 : CTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGAC : 285896 137 : rgTyrValAlaAlaSerCysAlaIlePheMet<->GlnGlyGlyIleLeuCysPheCy : 154 ||! !:!!||| !! !|||||| !|||||| ...||||||.!!!!!! ! ! rgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrTh 285897 : GATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCAC : 285953 155 : sPheValThrIleLeuThrThrGluThrIleGlnValGlyAsnGluThrArgValLeu : 173 ! :!! !!:!:! !|||..!...||| :!!! !||||||||| ! !! ! rValMetProLeuCysThrValArgThrGluIleIleAspAsnGluThrValArgSer 285954 : GGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCT : 286010 174 : HisValLeuProCysAlaValTyrLysLysLeuValAsnValGluGluAsnSerIleA : 193 !!.!.!!!!||| :!!|||::: |||:!!:!! !... !:! !! GlnAlaPhePro------IleTyrArgGlyLeuLeuAspProArgThrSerProSerP 286011 : CAAGCGTTCCCG------ATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGT : 286064 194 : snIlePheMetLeuCysPheGlnPheValAlaAlaAlaIleAlaAsnSerSerThrVa : 212 ! .!!:!!! !! !.!.|||! !:!!|||||| !:!! ! !!||| !||||| heGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrVa 286065 : TCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGT : 286121 213 : lGlyIlePheSerLeuAlaAlaValLeuAlaAlaHisAlaTyrGlyGlnLeuSerVal : 231 |||| !! !|||||||||||||||!!!!.! !|||!.!! !||||||!!!!!!:!! lGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIle 286122 : TGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATA : 286178 232 : ValMetValTrpIleThrGluPheValAsnGlnSerArgAsnGlnLysLysThrAspA : 251 :!!:!!..! !:!: !:!!.!!|||:!! ! !!:!...::!||| ! !..! LeuValThrLysLeuAspLysLeuValAspGlyValLysGlyArgLysGlyLeuSerT 286179 : CTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCA : 286238 252 : spPheLysGlu<->IleGlyIleIleValGluArgHisLeuArgValLeu{As} >> : 267 !:!!:!! :!:||| !|||:!!|||!.!||||||!:!:!!|||{..} hrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 286239 : CGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt.. : 286293 268 : >> Target Intron 2 >>>> {n}PheIleThrTyrLeuGluAsnIleMetAsn : 277 408 bp {!}||||||:!! ! :!!|||...:!!:!:||| ++{y}PheIleSerGlnIleGluGlyLeuLeuAsn 286294 : .......................ag{T}TTTATATCGCAAATCGAGGGGCTCCTAAAC : 286727 278 : ArgIleTyrPheLeuGluLeuPheArgCysThrMetIleIleCysIleValGlyTyrT : 297 ..!|||! !|||:!!|||:!!.!! !!||||||:!!! !||||||.!!:!!||||||| GluIleCysPheValGluValIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrT 286728 : GAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGGGATATT : 286787 298 : yrIleLeuThr >>>> Target Intron 3 >>>> GluTrpAlaGluLysAsn : 306 ||:!!|||||| 80 bp ||||||! !:!!!...!. yrLeuLeuThr++ ++GluTrpGluGlnSerGlu 286788 : ATTTACTGACGgt.........................agGAATGGGAGCAAAGTGAA : 286894 307 : ValGlnAsnLeuThrThrTyrPheMetMetLeuLeuSerIleCysPheAsnIlePheI : 326 ..! !... !! !||||||! !! !:!!|||:!!|||.!! ||||||:!!|||| ThrIleGlyThrIleThrTyrCysThrLeuLeuValSerPheThrPheAsnValPheI 286895 : ACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCA : 286954 327 : leIleCysTyrIleGlyGluIleLeuThrGluGln >>>> Target Intron 4 : 338 ||:!!|||||||||||||||||||||:!!|||||| 74 bp leLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286955 : TACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt..................... : 286992 339 : >>>> CysMetLysIleGlyGluValValTyrMetThrAspTrpTyrTyrLeuProA : 355 |||:!:|||:!!||| ! !..!||||||! !||||||||| !||||||! ++CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProG 286993 : ....agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAG : 287115 356 : spLysThrIleLeuAsnLeuIleLeuIleIleLeuArgSerThrValValValGlnIl : 374 |||||| !! !..!||||||||||||.!! ! !|||!.! ! !:!!:!!:! lyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLe 287116 : GAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATT : 287172 375 : eThrAlaGlyLysLeuPheAsnMetSerIleTyrThrPheGlyAsp >>>> Targe : 390 !||||||||||||:!!.!!:!!:!:|||:!! !!:!||| !!..! uThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSer++ 287173 : AACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt.......... : 287222 391 : t Intron 5 >>>> ValLeuLysThrAlaPheAlaTyrLeuAsnLeuLeuArgGl : 403 71 bp |||||||||:!!|||||||||||||||!:!||||||||| ++ValLeuLysSerAlaPheAlaTyrLeuSerLeuLeuArgTh 287223 : ...............agGTGTTGAAATCGGCATTCGCATATCTGAGCTTATTACGTAC : 287330 404 : nMetThr : 405 !:!:||| rLeuThr 287331 : GCTAACC : 287338 vulgar: AmOr27 12 405 . KQ414889.1 284511 287338 + 587 M 40 120 G 0 3 M 63 189 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 30 90 G 0 3 M 31 93 G 2 0 M 75 225 G 0 3 M 12 36 S 0 2 5 0 2 I 0 404 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284512 287338 587 + . gene_id 8 ; sequence AmOr27 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284512 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284512 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286698 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 4 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 3 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287220 287221 . + . intron_id 5 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 287220 287290 . + . intron_id 5 KQ414889.1 exonerate:protein2genome:local splice3 287289 287290 . + . intron_id 4 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 287291 287338 . + . KQ414889.1 exonerate:protein2genome:local exon 287291 287338 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284512 287338 587 + . alignment_id 8 ; Query AmOr27 ; Align 284512 13 120 ; Align 284635 53 189 ; Align 285839 117 90 ; Align 285932 147 93 ; Align 286025 180 225 ; Align 286253 255 36 ; Align 286700 268 99 ; Align 286879 301 111 ; Align 287064 338 156 ; Align 287291 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 497 Query range: 15 -> 337 Target range: 212869 -> 214740 16 : AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuP : 35 ::: |||::: !! !|||||||||.!!|||||||||! ||| !|||||| ! AsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspL 212870 : aatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACA : 212927 36 : heSerThrThrThrLysPheGluLysThrValSerLeuIleLeuAsnIleIleCysTy : 54 ||| !..!:!! !.!!||||||!.!:!!:!!! !:!::!!|||! !:!!||||| ysSerTyrValSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTy 212928 : AGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTA : 212984 55 : rAlaIleValIleLeuCysAlaThrProSerLeuMetGlnIleIleLeuAlaGluGlu : 73 |!.!:!::!! !! ! !!.!! !|||!!! !:!! ! :!:.!!|||! !! !||| rGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGlu 212985 : CGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgag : 213041 74 : SerPheTyrLeuLysLeuLysThrLeuGlyProValSerHisTrpPheValSerThrV : 93 :::...::: ::::!!:!! !!!!||| ! !!:!! !!! ! !.!:!! ! AsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuT 213042 : aatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGT : 213101 94 : alAsnTyrThrAlaLeuLeuMetLysSerLysAspIleArgTyrCysPheGluHisMe : 112 !!!.||| !:!!|||:!!:!: ! .!! ! ||||||||| ||| !!|||||||| rpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMe 213102 : GGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATAT : 213158 113 : tGluAlaAspTrpGlnThrIleLysArgMetGluAspGlnGlnThrMetLeuLysAsn : 131 |:!! !||||||:!!!.!|||! !!.! !||||||:!!:!!! !||| ! !||| tLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsn 213159 : GAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAAC : 213215 132 : AlaLysPheGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnGlyGlyIleL : 151 |||!..||||||!:! :!!!.!.!!! !||||||.!!|||||| ! !|||.!! AlaSerPheGlyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheT 213216 : GCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCA : 213275 152 : euCysPheCysPheValThrIleLeuThrThrGluThrIleGlnValGlyAsnGluTh : 170 !! !!:!! !.!!|||..! :!!!:!.!!!!:! !!!: !!.!! !:!! !. hrPheTyrPheLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAs 213276 : CGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAA : 213332 171 : rArgValLeuHisValLeuProCysAlaValTyrLysLysLeuValAsnValGluGlu : 189 ! !..!!!!... !:!! ! ! !!|||! !:! :!!|||:!!|||..! ! nValThrPheArgGlnMetValValProValSerArgPheIleValAspValArgTyr 213333 : CGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATAC : 213389 190 : AsnSerIleAsnIlePheMetLeuCysPheGlnPheValAlaAlaAlaIleAlaAsnS : 209 !:! !!:!:||| .!..!.!!!! .!!|||.!!:!!|||!.!!.!:!: !:!!: SerProValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisA 213390 : AGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATG : 213449 210 : erSerThrValGlyIlePheSerLeuAlaAlaValLeuAlaAlaHisAlaTyrGlyGl : 228 !!! !.!!|||! ! !! !|||||||||||||||!!!|||!.!||||||! !||||| laIleAlaValValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGl 213450 : CTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACA : 213506 229 : nLeuSerValValMetValTrpIleThrGluPheValAsnGlnSerArgAsnGlnLys : 247 |:!!.!!:!!:!!||| !|||:!: !.!.!!.:!!:!! !!!..!:!!..!!.. nMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGlyArgGluAspMetSer 213507 : GATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGC : 213563 248 : LysThrAspAspPheLysGluIleGlyIleIleValGluArgHisLeuArgValLeuA : 267 |||!.!! ||| ! ..!|||!.!:!!||||||.!.!:!|||:!!|||:!!|||! LysAsnValAsp---AspArgIleAlaValIleValAsnGlnHisValArgIleLeuL 213564 : AAGAATGTGGAC---GACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTGA : 213620 268 : snPheIleThr >>>> Target Intron 1 >>>> TyrLeuGluAsnIleMet : 276 !.!:::!: ! 840 bp !:!!|||!!. !:!: ysTrpValGlu-+ ++LeuValGluLysAlaLeu 213621 : AGTGGGTGGAAtt.........................agCTCGTGGAGAAAGCACTT : 214487 277 : AsnArgIleTyrPheLeuGluLeuPheArgCysThrMetIleIleCysIleValGlyT : 296 ...!:!:!!! !||| !||||||!!. !||||||:!!! !:!!|||:!!||||||| ArgGlnValSerPheAlaGluLeuLeuValCysThrValAsnLeuCysLeuValGlyT 214488 : CGGCAAGTATCTTTCGCTGAATTATTAGTATGCACGGTGAATCTCTGTCTCGTTGGAT : 214547 297 : yrTyrIleLeuThr >>>> Target Intron 2 >>>> GluTrpAlaGluLys : 305 ||||||||:!!||| 68 bp |||||| !..!!!. yrTyrIleIleThr++ ++GluTrpAsnSerAsn 214548 : ATTACATAATAACGgt.........................aggAATGGAATTCGAAC : 214642 306 : AsnValGlnAsnLeuThrThrTyrPheMetMetLeuLeuSerIleCysPheAsnIleP : 325 |||:!! !!.! !..!|||||| ! :!!:!!! !:!!|||::: |||||||||| AsnLeuThrThrThrValThrTyrValValLeuTyrIleSerLeuThrPheAsnIleP 214643 : AATTTAACAACTACAGTAACTTACGTGGTGTTGTATATCTCTCtcactttcaatattt : 214702 326 : heIleIleCysTyrIleGlyGluIleLeuThrGluGln : 337 |||||...|||||||||||||||:!!:!!:!!|||||| heIlePheCysTyrIleGlyGluLeuValSerGluGln 214703 : tcatattttgttaCATAGGCGAGCTTGTGTCTGAACAG : 214740 vulgar: AmOr27 15 337 . KQ414889.1 212869 214740 + 497 M 236 708 G 1 0 M 18 54 5 0 2 I 0 836 3 0 2 M 30 90 5 0 2 I 0 64 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212870 214740 497 + . gene_id 9 ; sequence AmOr27 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212870 213631 . + . KQ414889.1 exonerate:protein2genome:local exon 212870 213631 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 213632 213633 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 213632 214471 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214470 214471 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214472 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214472 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212870 214740 497 + . alignment_id 9 ; Query AmOr27 ; Align 212870 16 708 ; Align 213578 253 54 ; Align 214472 271 90 ; Align 214630 301 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 476 Query range: 11 -> 405 Target range: 278561 -> 280551 12 : LysThrAsnSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyA : 31 !!.|||:!!!!! ||||||:!!|||:!!|||||||||||||||||||||||||||! AsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyV 278562 : AACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCG : 278619 32 : laTrpProLeuPheSerThrThrThrLysPheGluLysThrValSerLeuIleLeuAs : 50 .!||||||||| ! ! !..!|||! !!.||||||! ! !|||:!!:!!||| alTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAl 278620 : TATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGC : 278676 51 : nIleIle<->CysTyrAlaIleValIleLeuCysAlaThrProSerLeuMetGlnIle : 68 :!!||| |||!:! !|||! !.!!|||! !.! !! !:!!||| !:!: aLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrVal 278677 : GTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTG : 278733 69 : IleLeuAlaGluGluSerPheTyrLeuLysLeuLysThrLeuGlyProValSerHisT : 88 :!! ! ! ! ..!.!! !! !|||:!!|||! !:!!||||||:!!||| !! LeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheC 278734 : CTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCT : 278793 89 : rpPheValSerThrValAsnTyrThrAlaLeuLeuMetLysSerLysAspIleArgTy : 107 ! :!!:!!|||:!!!!.||| ! !|||:!! !:::.!! ! ||| !! ! ysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLy 278794 : GCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAA : 278850 108 : rCysPheGluHisMetGluAlaAspTrpGln<-><-><->ThrIleLysArgMetGlu : 123 ||| ! .!. !!!!:....!!||||||... :!! !:::::: ||| sCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGlu 278851 : ATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagag : 278907 124 : AspGlnGlnThrMetLeuLysAsnAlaLysPheGlyArgTyrValAlaAlaSerCysA : 143 ::::::::: ||| ! ! !:!|||!:!.!!||||||! !:!!||| !! ! !!| GluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerA 278908 : gagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCG : 278967 144 : laIlePheMet<->GlnGlyGlyIleLeuCysPheCysPheValThrIleLeuThrTh : 161 || !|||||| ...||||||:!!!!!! ! !..! ! :!! !!:!:!!!.!!.. laGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaVa 278968 : CCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGT : 279024 162 : rGluThrIleGlnValGlyAsnGluThrArgValLeuHisValLeuProCysAlaVal : 180 !...||| :!!! !||||||||| ! !! !!!.!.!!!!||| :!! lArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPhePro------Ile 279025 : ACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCG------ATC : 279075 181 : TyrLysLysLeuValAsnValGluGluAsnSerIleAsnIlePheMetLeuCysPheG : 200 |||::: |||:!!:!! !... !:! !! ! .!!:!!! !! !.!.| TyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetG 279076 : TATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGC : 279135 201 : lnPheValAlaAlaAlaIleAlaAsnSerSerThrValGlyIlePheSerLeuAlaAl : 219 ||! !:!!|||||| !:!! ! !!||| !||||||||| !! !|||||| !|| lnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAl 279136 : AATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGC : 279192 220 : aValLeuAlaAlaHisAlaTyrGlyGlnLeuSerValValMetValTrpIleThrGlu : 238 ||||!!!!.! !|||!.!! !||||||!!!!!!:!!:!!:!!..! !:!: !:!! aValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLys 279193 : TGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAG : 279249 239 : PheValAsnGlnSerArgAsnGlnLysLysThrAspAspPheLysGlu<->IleGlyI : 257 .!!:!!:!! ! !!:!...::!|||!.. !..! !:!!:!! :!:||| LeuIleAspGlyValLysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyA 279250 : CTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAG : 279309 258 : leIleValGluArgHisLeuArgValLeu{As} >>>> Target Intron 1 >> : 267 !|||:!!|||!.!||||||!:!:!!|||{..} 657 bp spIleIleGluHisHisLeuLysIleLeu{Gl}++ 279310 : ATATCATCGAGCATCATCTGAAGATACTG{GG}gt....................... : 279343 268 : >> {n}PheIleThrTyrLeuGluAsnIleMetAsnArgIleTyrPheLeuGluLeu : 284 {.}!!..!!|||:!! ! |||! ! :!! ! !|||||| .!.:!! +-{y}LeuPheThrHis---GlyAsnArgAspAspLeuCysTyrPhe---HisIle 279344 : ..at{A}TTATTTACTCAC---GGTAACAGAGACGACTTATGTTATTTC---CATATT : 280041 285 : PheArgCysThrMetIleIleCysIleValGlyTyrTyrIleLeuThrGluTrpAlaG : 304 ! ! !...! !!!: !.!! !!!: !..!! ! :!!!!! !||||||! !: ValMetAlaLysIleAlaPheValMetTyrSerLeuSerValPhe***GluTrpGluG 280042 : GTAATGGCAAAAATTGCATTCGTCATGTACTCGTTGTCAGTTTTCTAGGAATGGGAGC : 280101 305 : luLysAsnValGlnAsnLeuThrThrTyrPheMetMetLeuLeuSerIleCysPheAs : 323 !!!!.:!!!.! !... ! !||||||!!.|||.!.|||:!!|||:!! ||||| lnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerLeuThrPheAs 280102 : AAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTTTAACGTTCAA : 280158 324 : nIlePheIleIleCysTyrIleGlyGluIleLeuThrGluGln >>>> Target I : 338 |:!!||||||:!!|||||||||||||||||||||:!!|||||| 74 nValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 280159 : CGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt............. : 280205 339 : ntron 2 >>>> CysMetLysIleGlyGluValValTyrMetThrAspTrpTyrTy : 352 bp |||:!:|||:!!|||! ! !..!||||||! !||||||||| ++CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrAr 280206 : ............agTGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCG : 280319 353 : rLeuProAspLysThrIleLeuAsnLeuIleLeuIleIleLeuArgSerThrValVal : 371 !||||||! |||! ! !! !..!||||||||||||.!! ! !|||!.! ! ! gLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSer 280320 : TTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCC : 280376 372 : ValGlnIleThrAlaGlyLysLeuPheAsnMetSerIleTyrThrPheGlyAsp >> : 390 :!!:!!:!!||||||||||||:!!.!!:!!:!:|||:!! !!:!||| !!..! IleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSer++ 280377 : ATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt.. : 280435 391 : >> Target Intron 3 >>>> ValLeuLysThrAlaPheAlaTyrLeuAsnLeu : 400 71 bp |||||||||||||||||||||||||||!:!||| ++ValLeuLysThrAlaPheAlaTyrLeuSerLeu 280436 : .......................agGTGTTAAAAACGGCATTCGCATATCTGAGCTTA : 280534 401 : LeuArgGlnMetThr : 405 |||||| !:!:||| LeuArgThrLeuThr 280535 : TTACGTACGCTTACC : 280551 vulgar: AmOr27 11 405 . KQ414889.1 278561 280551 + 476 M 41 123 G 0 3 M 65 195 G 0 9 M 29 87 G 0 3 M 31 93 G 2 0 M 75 225 G 0 3 M 12 36 S 0 2 5 0 2 I 0 653 3 0 2 S 1 1 M 4 12 G 1 0 M 9 27 G 1 0 M 55 165 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278562 280551 476 + . gene_id 10 ; sequence AmOr27 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278562 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278562 279340 . + . insertions 18 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279997 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279996 279997 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 279998 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 279998 280202 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280551 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278562 280551 476 + . alignment_id 10 ; Query AmOr27 ; Align 278562 12 123 ; Align 278688 53 195 ; Align 278892 118 87 ; Align 278982 147 93 ; Align 279075 180 225 ; Align 279303 255 36 ; Align 279999 268 12 ; Align 280011 273 27 ; Align 280038 283 165 ; Align 280277 338 156 ; Align 280504 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 403 Query range: 300 -> 405 Target range: 277371 -> 277842 301 : GluTrpAlaGluLysAsnValGlnAsnLeuThrThrTyrPheMetMetLeuLeuSerI : 320 ||||||:!!!!:!..:!!||||||!..:!!||||||:!!||||||!!:|||:!!|||! GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 321 : leCysPheAsnIlePheIleIleCysTyrIleGlyGluIleLeuThrGluGln >>> : 338 !:||||||||||||||| !:!!|||||||||||||||||||||||||||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 339 : > Target Intron 1 >>>> CysMetLysIleGlyGluValValTyrMetThrA : 349 72 bp |||! |||:!!|||||||||||||||||||||: ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 350 : spTrpTyrTyrLeuProAspLysThrIleLeuAsnLeuIleLeuIleIleLeuArgSe : 368 !!||||||||||||||||||||| !||||||||||||:!!|||||||||! !||||| snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 369 : rThrValValValGlnIleThrAlaGlyLysLeuPheAsnMetSerIleTyrThrPhe : 387 |!:!:::|||::::::||||||||||||||||||......||||||:!:||||||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 388 : GlyAsp >>>> Target Intron 2 >>>> ValLeuLysThrAlaPheAlaTy : 397 |||||| 84 bp |||:!!||||||.!!|||||||| GlyAsp++ ++ValIleLysThrThrPheAlaTy 277703 : GGCGATgt.........................agGTAATAAAAACCACTTTCgcgta : 277816 398 : rLeuAsnLeuLeuArgGlnMetThr : 405 |||||||:::|||||||||! !||| rLeuAsnIleLeuArgGlnThrThr 277817 : tttaaatattctacgCCAAACGACG : 277842 vulgar: AmOr27 300 405 . KQ414889.1 277371 277842 + 403 M 37 111 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277842 403 + . gene_id 11 ; sequence AmOr27 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277842 403 + . alignment_id 11 ; Query AmOr27 ; Align 277372 301 111 ; Align 277555 338 156 ; Align 277795 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 387 Query range: 1 -> 269 Target range: 221333 -> 222134 2 : MetAsnGlnThrAlaIleThrGluGluIleLysThrAsnSerAspTyrSerLeuGlnL : 21 :!!::!..!||| !:!! ! ! !!: !||||||||| ! ! ! |||:!!|||| LeuSerSerThrArgValGluTyrAspTyrLysThrAsnValLysLeuSerValGlnL 221334 : CTGTCTTCGACTCGTGTTGAATACGATTACAAGACGAACGTGAAATTGAGCGTGCAAT : 221391 22 : euAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuPheSerThrThrThrLy : 40 ||!:!||||||.!!|||||||||||||||!.!|||||| !! :!!!.!! !:!!! euSerArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaAsnIleSerTh 221392 : TGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCAC : 221448 41 : sPheGluLysThrValSerLeuIleLeuAsnIleIleCysTyrAlaIleValIleLeu : 59 ! ! |||!:! !:!!! !! !:!::!!|||:!!:!!||||||::!:!::!!! !!! rValGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLeuIleThrPhe 221449 : GGTAGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTC : 221505 60 : CysAlaThrProSerLeuMetGlnIleIleLeuAlaGluGluSerPheTyrLeuLysL : 79 ! !..!|||!!! !:!: ! :!:||||||! !! !|||..! !!||| !!:!: LeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspValTyrAsnArgI 221506 : CTCTTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAA : 221565 80 : euLysThrLeuGlyProValSerHisTrpPheValSerThrValAsnTyrThrAlaLe : 98 !!||| !|||||||||:!!||| !!! ! :!!:!! !:!!!!.||| ! !|| leLysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLe 221566 : TCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTT : 221622 99 : uLeuMetLysSerLysAspIleArgTyrCysPheGluHisMetGluAlaAspTrpGln : 117 |:!!:!: ! ..!!!.||||||||| ! |||.!!|||!.!!!:||| !||||||:!! uIleLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTrpAspTrpLys 221623 : GATACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAG : 221679 118 : ThrIleLysArgMetGluAspGlnGlnThrMetLeuLysAsnAlaLysPheGlyArgT : 137 !.!|||! ! :!!|||:!!.!.! !|||:!!:!!||||||! ||||||||| AsnIleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIlePheGlyArgA 221680 : AATATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGC : 221739 138 : yrValAlaAlaSerCysAlaIlePheMetGlnGlyGlyIleLeuCysPheCysPheVa : 156 :!! ! !! !|||.!!.!!|||||| ! .!!|||...::: ::: ...!. rgLeuIleMetIleCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAl 221740 : GATTGATCATGATCTGCACATTTTTCATGTACAGTggtttcgttttttattacatAGC : 221796 157 : lThrIleLeuThrThrGluThrIleGlnValGlyAsnGluThrArgValLeuHisVal : 175 !! ! !!!!:!..!! ! !|||! !.! !:!! ... ...... ! aIleProPheSerValGlyLysIleProAlaGlnAspValAsnValThrPheIlePro 221797 : CATACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCA : 221853 176 : LeuProCysAlaValTyrLysLysLeuValAsnValGluGluAsnSerIleAsnIleP : 195 :!! !! ! !! !!! !:! :!!|||:!!..!..! ! !:! !!:!!||| . MetValPheProPheSerArgPheIleValAspThrArgTyrSerProValAsnGluI 221854 : ATGGTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGA : 221913 196 : heMetLeuCysPheGlnPheValAlaAlaAlaIleAlaAsnSerSerThrValGlyIl : 214 !!:!!!!!! .!!|||.!!:!!|||!.!|||:!: !:!!|||! !||| !!.! leLeuPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAl 221914 : TTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGC : 221970 215 : ePheSerLeuAlaAlaValLeuAlaAlaHisAlaTyrGlyGlnLeuSerValValMet : 233 !! !||||||!.!|||:!!!!!|||!.!||||||! !||||||:!!..!|||:!!||| aCysSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMet 221971 : TTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATG : 222027 234 : ValTrpIleThrGluPheValAsnGlnSerArgAsnGlnLysLysThrAspAspPheL : 253 !|||:!:! !.!.!!.:!!||| !! !:!!..! !!.!.!! ||| ! SerTrpLeuLysHisLeuIleAsnGlyArgAlaAspMetCysAsnAsnValAsp---A 222028 : AGCTGGCTGAAACATTTGATCAACGGCCGGGCGGATATGTGTAACAACGTGGAT---A : 222084 254 : ysGluIleGlyIleIleValGluArgHisLeuArgValLeuAsnPheIle : 269 :!..!|||!.!! ||||||.!.!:!|||:!!|||:!!|||.!.!:!:!! rgArgIleAlaLysIleValAsnGlnHisValArgIleLeuGlnTyrVal 222085 : GGAGAATAGCGAAGATTGTGAATCAACACGTTCGAATATTGCAGTATGTA : 222134 vulgar: AmOr27 1 269 . KQ414889.1 221333 222134 + 387 M 250 750 G 1 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221334 222134 387 + . gene_id 12 ; sequence AmOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221334 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221334 222134 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221334 222134 387 + . alignment_id 12 ; Query AmOr27 ; Align 221334 2 750 ; Align 222084 253 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 375 Query range: 1 -> 266 Target range: 208167 -> 208959 2 : MetAsnGlnThrAlaIleThrGluGluIleLysThrAsnSerAspTyrSerLeuGlnL : 21 |||!..|||! ! !:!!!.!..!.!. !|||!.!:!! !..!!:!!:!:!!!::| MetArgGlnIlePheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgL 208168 : ATGAGACAAATATTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTC : 208225 22 : euAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuPheSerThrThrThrLy : 40 ||||| !||| |||||| !||||||:!!|||||| !! !! ! ! !:!! euAsnValTrpThrLeuLysIleIleGlySerTrpProArgSerIleAspArgSerTr 208226 : TGAACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTG : 208282 41 : sPheGluLysThrValSerLeuIleLeuAsnIleIleCysTyrAlaIleValIleLeu : 59 !!!.|||!!.!:! ! !:!!:!!||||||:!!:!! !!:!!..!:!::!! !!!! pLeuGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPhe 208283 : GTTAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTC : 208339 60 : CysAlaThrProSerLeuMetGlnIleIleLeuAlaGluGluSerPheTyrLeuLysL : 79 !!.!! !|||!!! !||| ||||||!.!! |||..!|||||| !:!!| IleValIleProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnL 208340 : ATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAAT : 208399 80 : euLysThrLeuGlyProValSerHisTrpPheValSerThrValAsnTyrThrAlaLe : 98 |||||! !! !.!! !!:!!||| !!::.!.:!!:!! !..!!!.|||..! !:! euLysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMe 208400 : TAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCAT : 208456 99 : uLeuMetLysSerLysAspIleArgTyrCysPheGluHisMetGluAlaAspTrpGln : 117 ! !:!::::..! ||||||||| ! ||| !!|||:!!:!:||||||||||||::! tThrValArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArg 208457 : GACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGA : 208513 118 : ThrIleLysArgMetGluAspGlnGlnThrMetLeuLysAsnAlaLysPheGlyArgT : 137 !.!:!::!!!.! !||||||::!:!!! !|||||| ! ||||||!..|||!.!||| AsnValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgL 208514 : AACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGA : 208573 138 : yrValAlaAlaSerCysAlaIlePheMetGlnGlyGlyIleLeuCysPheCysPheVa : 156 ! :!! !!.!! !|||!.! !|||||| ! ||||||:::::: ::: .!!!. ysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAl 208574 : AACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGC : 208630 157 : lThrIleLeuThrThrGluThrIleGlnValGlyAsnGluThrArgValLeuHisVal : 175 ! ! |||||| !!!:! !:!! ! !! !..!! !.! !..!! !... ! aLeuProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArg 208631 : TTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGG : 208687 176 : LeuProCysAlaValTyrLysLysLeuValAsnValGluGluAsnSerIleAsnIleP : 195 ||| !! ! !!||| !||| :!!:!!:!!|||..! ! !:! !!:!:||| . LeuValTyrProValProLysPheIleLeuAspValArgTyrSerProValAsnGluI 208688 : CTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGA : 208747 196 : heMetLeuCysPheGlnPheValAlaAlaAlaIleAlaAsnSerSerThrValGlyIl : 214 !!.!.! ! ! |||!!.:!!:!!!.! !:!!|||:!!!:!! !||||||||| lePheTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAl 208748 : TTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGC : 208804 215 : ePheSerLeuAlaAlaValLeuAlaAlaHisAlaTyrGlyGlnLeuSerValValMet : 233 !! !.!!|||||||||:!!|||||| !||||||! !|||||||||..!:!!:!!||| aCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMet 208805 : TTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATG : 208861 234 : ValTrpIleThrGluPheValAsnGlnSerArgAsnGlnLysLysThrAspAspPheL : 253 !|||!!: !:!!!!.|||:!! ! !!..!:!!:!!:!!|||!.! ||| : SerTrpMetGluLysLeuValAspGlyArgGluAspGluGluLysAsnLeuAsp---G 208862 : TCCTGGATGGAGAAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGAT---C : 208918 254 : ysGluIleGlyIleIleValGluArgHisLeuArgValLeu : 266 !!..!:!:!.!! !|||||||||!:!|||:!!||||||:!! lnArgLeuAlaAsnIleValGluGlnHisValArgValIle 208919 : AGAGGTTGGCTAATATCGTGGAGCAGCATGTTCGAGTGATC : 208959 vulgar: AmOr27 1 266 . KQ414889.1 208167 208959 + 375 M 250 750 G 1 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208168 208959 375 + . gene_id 13 ; sequence AmOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208168 208959 . + . KQ414889.1 exonerate:protein2genome:local exon 208168 208959 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208168 208959 375 + . alignment_id 13 ; Query AmOr27 ; Align 208168 2 750 ; Align 208918 253 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 374 Query range: 15 -> 336 Target range: 226927 -> 228355 16 : AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuP : 35 :!! |||:!!|||||||||||||||.!.|||||||||:!!||| !||||||! !! AsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerS 226928 : AACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGT : 226985 36 : heSerThrThrThrLysPheGluLysThrValSerLeuIleLeuAsnIleIleCysTy : 54 !!! !!:!:!!::!.!.! !!:! ! !!|||! !:!::!!..!.!!:!!||||| erArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTy 226986 : CGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTA : 227042 55 : rAlaIleValIleLeuCysAlaThrProSerLeuMetGlnIleIleLeuAlaGluGlu : 73 ||||:!::!!! !!!! !..! !!||| !:!! ! :!::!!|||! !! !:!! rAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLys 227043 : CGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAA : 227099 74 : SerPheTyrLeuLysLeuLysThrLeuGlyProValSerHisTrpPheValSerThrV : 93 .!! !||| !! !||||||! !:!!||||||:!!||| !!:: :!!||| !: GlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuL 227100 : GGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCC : 227159 94 : alAsnTyrThrAlaLeuLeuMetLysSerLysAspIleArgTyrCysPheGluHisMe : 112 !!!!.|||:!! !||| !.!. ! ..! ! ||||||! ! ! ||| !!|||!..!! euLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIl 227160 : TCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGAT : 227216 113 : tGluAlaAspTrpGlnThrIleLysArgMetGluAspGlnGlnThrMetLeuLysAsn : 131 ::!! !||||||:!!!.!|||!:! !:!!||||||::!.!...!|||:!!! ! !! eLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyr 227217 : CAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTAC : 227273 132 : AlaLysPheGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnGlyGlyIleL : 151 ||| ! !:!|||||| ! :!! !.!!! !|||.!!.!!|||:!: .........: AlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheV 227274 : GCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcg : 227333 152 : euCysPheCysPheValThrIleLeuThrThrGluThrIleGlnValGlyAsnGluTh : 170 :: ||| .!!|||..! !:!!!.!.!!! !!:!:!! !..!! !:!!! !!. alPhePheTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGlyAs 227334 : tatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAA : 227390 171 : rArgValLeuHisValLeuProCysAlaValTyrLysLysLeuValAsnValGluGlu : 189 !!.! !! ! ! !:!!|||! ! !! !! |||! :!!!.!:!!|||... ! nHisSerTyrIleGlnMetProPheProPheProLysIleIleAlaAspValArgTyr 227391 : CCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTAC : 227447 190 : AsnSerIleAsnIlePheMetLeuCysPheGlnPheValAlaAlaAlaIleAlaAsnS : 209 !:! !!.!!||| .!!.!.!!!! ! |||||||||.!!!.! !:!: !:!!. SerProPheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuHisG 227448 : AGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACG : 227507 210 : erSerThrValGlyIlePheSerLeuAlaAlaValLeuAlaAlaHisAlaTyrGlyGl : 228 !! !||| !!.! !! !|||:!!||||||:!!||||||!.!||||||! !||||| lyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGl 227508 : GTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCA : 227564 229 : nLeuSerValValMetValTrpIleThrGluPheValAsnGlnSerArgAsnGlnLys : 247 |:!!..!|||:!!:!! !|||:!: !.!.!!.:!!:!! !!! !:!!..!!.. nMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGlyArgAlaAspMetSer 227565 : GATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGCAGAGCGGATATGAGC : 227621 248 : LysThrAspAspPheLysGluIleGlyIleIleValGluArgHisLeuArgValLeuA : 267 |||||| ||| ! ..!|||!.!! !|||||| !.!|||:!!|||:!!|||! LysThrLeuAsp---AspArgIleAlaSerIleValThrHisHisValArgIleLeuL 227622 : AAAACACTGGAT---GATAGAATCGCTAGCATCGTCACTCACCACGTTCGAATATTGA : 227678 268 : snPheIleThrTyrLeuGluAsnIleMetAsnArgIleTyrPheLeuGluLeuPheAr : 286 !.! !:!!|||! !:!! ! :!: ..! ! !!:!.!.|||...... :: ysCysValThrCysIleTyrLeuLeuTyrArgAsp***PheLeuLeuAsnPheAsnGl 227679 : AGTGTGTAACGTGTATCTATTTGTTGTATCGTGATTAATTTCTcttgaattttaatca : 227735 287 : gCysThrMetIleIleCysIleValGlyTyrTyrIleLeuThrGluTrpAlaGluLys : 305 : !!:!! :!! !! !! !!.! !||| ! .!! ! !||| ! !||| nTyrSerArgLeuAlaTyrAsnAlaLeuTyrGluPheAlaLeuGluGluIle***Lys 227736 : atACAGCAGACTAGCTTATAACGCGTTGTATGAATTCGCGTTAGAGGAAATCTGAAAG : 227792 306 : AsnValGlnAsnLeuThr{T} >>>> Target Intron 1 >>>> {hr}TyrP : 314 .!. !....!.:!!|||{ } 468 bp {!!}|||! GluGlnSerGluValThr{P}++ +-{ro}TyrS 227793 : GAACAATCTGAAGTAACA{C}gt.........................aa{CT}TACT : 228287 315 : heMetMetLeuLeuSerIleCysPheAsnIlePheIleIleCysTyrIleGlyGluIl : 333 !:!:|||||||||.!! |||||||||||||||...||||||||||||||||| erAlaLeuLeuLeuSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIl 228288 : CAGCGTTACTTTTATCCTTTAccttcaatattttcatattttgttaTATAGGAGAAAT : 228344 334 : eLeuThrGlu : 336 |:!!.!!||| eValAlaGlu 228345 : TGTTGCCGAA : 228355 vulgar: AmOr27 15 336 . KQ414889.1 226927 228355 + 374 M 236 708 G 1 0 M 59 177 S 0 1 5 0 2 I 0 464 3 0 2 S 1 2 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226928 228355 374 + . gene_id 14 ; sequence AmOr27 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226928 227813 . + . KQ414889.1 exonerate:protein2genome:local exon 226928 227813 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 227814 227815 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227814 228281 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228280 228281 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 228282 228355 . + . KQ414889.1 exonerate:protein2genome:local exon 228282 228355 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226928 228355 374 + . alignment_id 14 ; Query AmOr27 ; Align 226928 16 708 ; Align 227636 253 177 ; Align 228284 313 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 366 Query range: 300 -> 405 Target range: 272836 -> 273302 301 : GluTrpAlaGluLysAsnValGlnAsnLeuThrThrTyrPheMetMetLeuLeuSerI : 320 ||||||.!!!!: ! :!! !!|||!:!||||||||||||||||||!!:|||:!!|||! GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 321 : leCysPheAsnIlePheIleIleCysTyrIleGlyGluIleLeuThrGluGln >>> : 338 !: |||||||||||||||::!|||||||||||||||||||||||||||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 339 : > Target Intron 1 >>>> CysMetLysIleGlyGluValValTyrMetThrA : 349 70 bp ||| |||||||||||||||||||||||||||: ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 350 : spTrpTyrTyrLeuProAspLysThrIleLeuAsnLeuIleLeuIleIleLeuArgSe : 368 !!|||||||||||||||! !||| !||||||:!!|||||||||||||||! !|||!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 369 : rThrValValValGlnIleThrAlaGlyLysLeuPheAsnMetSerIleTyrThrPhe : 387 !!:!||||||:!!:!!||||||||||||!:!:!! !! !||||||:!:||||||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 388 : GlyAsp >>>> Target Intron 2 >>>> ValLeuLysThrAlaPheAlaTy : 397 |||||| 81 bp |||:!!|||!:!||||||||||| GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 398 : rLeuAsnLeuLeuArgGlnMetThr : 405 |||||||:!!|||||||||! !||| rLeuAsnMetLeuArgGlnThrThr 273277 : CTTAAATATGCTACGACAAACGACA : 273302 vulgar: AmOr27 300 405 . KQ414889.1 272836 273302 + 366 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273302 366 + . gene_id 15 ; sequence AmOr27 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273302 366 + . alignment_id 15 ; Query AmOr27 ; Align 272837 301 111 ; Align 273018 338 156 ; Align 273255 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 356 Query range: 292 -> 405 Target range: 243580 -> 244951 293 : IleValGlyTyrTyrIleLeuThr >>>> Target Intron 1 >>>> GluTr : 302 :!!|||||||||||||||!!!! ! 837 bp ||||| LeuValGlyTyrTyrIlePheMet++ ++GluTr 243581 : CTAGTTGGATATTATATATTCATGgt.........................agGAATG : 244445 303 : pAlaGluLysAsnValGlnAsnLeuThrThrTyrPheMetMetLeuLeuSerIleCys : 321 |||||||!..:!!!.!:!!! !|||! !|||||||||!!: |||:!!:!!||| ! pAlaGluSerAspAlaLysIleLeuIleThrTyrPheIleAlaLeuValAlaIleVal 244446 : GGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTATAGCACTCGTTGCTATTGTT : 244502 322 : PheAsnIlePheIleIleCysTyrIleGlyGluIleLeuThrGluGln >>>> Tar : 338 ! !|||! !||||||:!!|||||||||.!!!!:! |||||||||||| SerAsnThrPheIleLeuCysTyrIleSerAspArgLeuThrGluGln++ 244503 : TCTAATACATTTATACTCTGTTATATCAGCGACAGGCTGACAGAACAGgt........ : 244555 339 : get Intron 2 >>>> CysMetLysIleGlyGluValValTyrMetThrAspTrp : 350 106 bp |||:!!|||:!!||||||||||||||||||||||||||| ++CysLeuLysValGlyGluValValTyrMetThrAspTrp 244556 : .................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGG : 244695 351 : TyrTyrLeuProAspLysThrIleLeuAsnLeuIleLeuIleIleLeuArgSerThrV : 370 ||||||||||||.!.!:!! !||||||:!!||||||||||||||| !||||||!.!: TyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnM 244696 : TATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACA : 244755 371 : alValValGlnIleThrAlaGlyLysLeuPheAsnMetSerIleTyrThrPheGlyAs : 389 !!||||||:!!|||||||||||||||:!!!!.:!!||||||:!!|||||||||||||| etValValGluIleThrAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAs 244756 : TGGTCGTTGAAATCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGA : 244812 390 : p >>>> Target Intron 3 >>>> ValLeuLysThrAlaPheAlaTyrLeuA : 399 | 89 bp |||:!!||||||!.!||||||||||||| p++ ++ValValLysThrGlyPheAlaTyrLeuA 244813 : Tgt.........................agGTAGTAAAAACAGGATTCGCCTACTTGA : 244931 400 : snLeuLeuArgGlnMetThr : 405 ||:!!||| !!||||||:!! snMetLeuCysGlnMetSer 244932 : ATATGCTTTGTCAAATGTCC : 244951 vulgar: AmOr27 292 405 . KQ414889.1 243580 244951 + 356 M 8 24 5 0 2 I 0 833 3 0 2 M 37 111 5 0 2 I 0 102 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 243581 244951 356 + . gene_id 16 ; sequence AmOr27 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 243581 243604 . + . KQ414889.1 exonerate:protein2genome:local exon 243581 243604 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 243605 243606 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 243605 244441 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244440 244441 . + . intron_id 0 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 244442 244552 . + . KQ414889.1 exonerate:protein2genome:local exon 244442 244552 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244553 244554 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244553 244658 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 244657 244658 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244659 244814 . + . KQ414889.1 exonerate:protein2genome:local exon 244659 244814 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244815 244816 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244815 244903 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 244902 244903 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244904 244951 . + . KQ414889.1 exonerate:protein2genome:local exon 244904 244951 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 243581 244951 356 + . alignment_id 16 ; Query AmOr27 ; Align 243581 293 24 ; Align 244442 301 111 ; Align 244659 338 156 ; Align 244904 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 251 Query range: 16 -> 390 Target range: 204236 -> 206401 17 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuPheS : 36 |||:!! !!::!!! !:! !.!!||| ! !:!!||||||||||||:!! TyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaTrpProIleProV 204237 : TACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGTGGCCGATTCCAG : 204294 37 : erThrThrThrLysPheGluLysThrValSerLeuIleLeuAsnIleIleCysTyrAl : 55 !!.!:!!:!! !||| !!:! !||| !!! !||| !:!!:!!:!! !||| alAsnSerSerProPheThrArgLeuValArgArgIleGluHisValValThrTyrPh 204295 : TGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGTAGTCACCtattt : 204351 56 : aIleValIleLeuCysAlaThrProSerLeuMetGlnIleIleLeuAlaGluGluSer : 74 ::: ...||| !..!|||.!!|||:!! ! :!:.!!||| !|||:!!!:! eLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheLeuLysGluLysAsn 204352 : cctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAGAAC : 204408 75 : PheTyrLeuLysLeuLysThrLeuGlyProValSerHisTrpPheValSerThrValA : 94 ! ! :!!:::||||||! !|||||||||:!! !:!!!! !:!!..! ! !!! GlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSerIleGlnPhePheL 204409 : GGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCATACAGTTCTTCA : 204468 95 : snTyrThrAlaLeuLeuMetLysSerLysAspIleArgTyrCysPheGluHisMetGl : 113 !.|||:!!!.!:!!||| ::!! ! ! ! |||!:! ! !!!!..!. !!!:.. ysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSerLeuAsnThrIleAr 204469 : AGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGTTTGAACACCATCAG : 204525 114 : uAlaAspTrpGlnThrIleLysArgMetGluAspGlnGlnThrMetLeuLysAsnAla : 132 ! !|||||| ! ! !! ! ! |||:!!!:! !! !.!.! !..!!!.||| gArgAspTrpIleGluAlaThrAsp---GluAsnArgLeuIlePheArgSerLysAla 204526 : ACGCGACTGGATAGAGGCTACGGAT---GAAAATCGGTTGATTTTCCGCTCGAAAGCG : 204579 133 : LysPheGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnGlyGlyIleLeuC : 152 |||.!!|||||| ||| ! !! !...||| ! !||| ! |||||| !|||| LysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetTyrGlyGlyGlyLeuC 204580 : AAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGTACGGCGGTGGTTTGT : 204639 153 : ysPheCysPheValThrIleLeuThrThrGluThrIleGlnValGlyAsnGluThrAr : 171 ||!:! ! :!! ! !||| !! !! !|||||| ||| ! !!!:!.! ysTyrArgThrIleLeuProLeuLeuArgGlyThrIle---ValThrProAspAsnVa 204640 : GTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATC---GTAACACCTGATAACGT : 204693 172 : gValLeuHisValLeuProCysAlaValTyrLysLysLeuValAsnValGluGluAsn : 190 !..!:!!... !||||||||| !!|||||| ... |||! !:!!...::: lThrIleArgProLeuProCysProValTyrPheValPhePheAsnGluGlnArgSer 204694 : TACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaacGAGCAACGTTCG : 204750 191 : SerIleAsnIlePheMetLeuCysPheGlnPheValAlaAlaAlaIleAlaAsnSerS : 210 !!! ! !! .!!:!:!!! .!.|||.!!:!!|||!.! !:!!.!! !!:!! ProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheValThrTyrAlaV 204751 : CCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTGTTACTTACGCTG : 204810 211 : erThrValGlyIlePheSerLeuAlaAlaValLeuAlaAlaHisAlaTyrGlyGlnLe : 229 !! ! !|||! !! !.!!:!!..!|||:!!!!!!.! !||||||! !.!!..!|| alIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAlaCysSerMetLe 204811 : TTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGCGTGCAGCATGCT : 204867 230 : uSerValValMetValTrpIleThrGluPheValAsnGlnSerArgAsnGlnLysLys : 248 |!!!:!!:!!:!! ! !!!:!.!! !.!!|||:!!:!!:!! :!!..!! :!! uArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAla---AspMetThrGlu 204868 : GAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCG---GACATGACCGAG : 204921 249 : ThrAspAspPheLysGluIleGlyIleIleValGluArgHisLeuArgValLeu{As} : 267 ||| !! !!:!:!!|||!.! !||||||||| !!!. !!:!:!! !{!.} ThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrLysIleLys{Ar} 204922 : ACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGAAGATAAAG{AG} : 204978 268 : >>>> Target Intron 1 >>>> {n}PheIleThrTyrLeuGluAsnIleMe : 276 1055 bp {.} |||..!!:!! !||| ! ++ ++{g}ThrIleValPhe***GluTrpGluAs 204979 : gt.........................ag{G}ACGATCGTGTTTTAGGAATGGGAGAA : 206060 277 : tAsnArgIleTyrPheLeuGluLeuPheArgCysThrMetIleIleCysIleValGly : 295 |||!.!! ! :!! !:!!!:!! ! !..!||| !|||! ! !! !! nAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerCysThrPheCys 206061 : CAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTTGTACATTCTGC : 206117 296 : TyrTyrIleLeuThrGluTrpAlaGluLysAsnValGlnAsnLeuThrThrTyrPheM : 315 !!:!|||||| ! ! !.!:!! !:!!.!..!.:!! ! !||| ! ValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGlnValArgAspTyrValS 206118 : GTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAGTGCGTGATTACGTAT : 206177 316 : etMetLeuLeuSerIleCysPheAsnIlePheIleIleCysTyrIleGlyGluIleLe : 334 ||| !! ! ! ...::: |||... !! !||| ! ! !! erMetLysTyrValAspSerLeuAsp---PhePheAsnSerTyr***LysTyrTyrHi 206178 : CAATGAAGTACGTGGattctttggat---ttttttaaCTCTTACTAGAAGTATTACCA : 206231 335 : uThrGluGlnCysMetLysIleGlyGluValValTyrMetThrAspTrpTyrTyrLeu : 353 ! ! !!||| ! :!:||| !..! !! !! !..!:!!|||||| !||| sPhe***GlnAsnHisValValGlyLeuThrSerCysThrValAsnTrpTyrArgLeu 206232 : TTTTTAACAGAACCACGTCGTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTT : 206288 354 : ProAspLysThrIleLeuAsnLeuIleLeuIleIleLeuArgSerThrValValValG : 373 |||:!!!:! ! ! !::!:!!|||||||||||| !! !|||!.! ! !:!!: ProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSerAsnTyrProIleL 206289 : CCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTCTAATTACCCAATAA : 206348 374 : lnIleThrAlaGlyLysLeuPheAsnMetSerIleTyrThrPheGlyAspVal : 390 !!:!!||||||||||||:!!|||.!.||||||:!! !!:!||| !|||||| ysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPheThrAspVal 206349 : AATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTCACCGATGTA : 206401 vulgar: AmOr27 16 390 . KQ414889.1 204236 206401 + 251 M 105 315 G 1 0 M 42 126 G 1 0 M 78 234 G 1 0 M 22 66 S 0 2 5 0 2 I 0 1051 3 0 2 S 1 1 M 56 168 G 1 0 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204237 206401 251 + . gene_id 17 ; sequence AmOr27 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 204237 204979 . + . KQ414889.1 exonerate:protein2genome:local exon 204237 204979 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 204980 204981 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 204980 206034 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206033 206034 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206035 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206035 206401 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 204237 206401 251 + . alignment_id 17 ; Query AmOr27 ; Align 204237 17 315 ; Align 204552 123 126 ; Align 204678 166 234 ; Align 204912 245 66 ; Align 206036 268 168 ; Align 206204 325 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 242 Query range: 180 -> 405 Target range: 300222 -> 302163 181 : TyrLysLysLeuValAsnValGluGluAsnSerIleAsnIlePheMetLeuCysPheG : 200 ||| ! !!!!:!!:!!..!:!! !:! !!! ! !! ...:::... |||. TyrAspTrpPheIleAspThrGlnThrSerProThrTyrGluIleValPhePhePheH 300223 : TACGATTGGTTTATCGATACACAAACCAGTCCTACCTACGAgatcgtatttttctttc : 300280 201 : lnPheValAlaAlaAlaIleAlaAsnSerSerThrValGlyIlePheSerLeuAlaAl : 219 .. !!|||||| !||| ! !!!:! !|||..!!.! !:!||||||||||| isCysPheAlaAlaMetIleMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAl 300281 : actgttTCGCAGCGATGATCATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGC : 300337 220 : aValLeuAlaAlaHisAlaTyrGlyGlnLeuSerValValMetValTrpIleThrGlu : 238 |:!!!!!!.!.!!||| !! !||||||:!!..!:!! !|||!.! ! :!: !!!: aIlePheValThrHisIleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAsp 300338 : GATATTCGTCACTCATATCTGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGAT : 300394 239 : PheValAsnGlnSerArgAsnGlnLysLysThrAspAspPheLysGluIleGlyIleI : 258 .!.||| ..!|||!.. !:!!||| !|||! ! ! ! :!:! !:!!| LeuVal------GluArgThrGlyGluLysAspAspGlyProAspProLeuValValI 300395 : CTGGTG------GAGAGGACGGGAGAGAAGGACGACGGTCCTGATCCTTTGGTCGTTA : 300448 259 : leValGluArgHisLeuArgValLeu{As} >>>> Target Intron 1 >>>> : 267 |||||..! !|||:!!!:!||||||{!.} 1110 bp leValArgAspHisValLysValLeu{Ar}++ + 300449 : TCGTTCGAGATCACGTGAAGGTTTTA{AG}gt.........................a : 301585 268 : {n}PheIleThrTyrLeuGluAsnIleMetAsnArgIleTyrPheLeuGluLeuPhe : 285 {.} ! !! !!!!... ! !! !!.!:!!! ! ::: ||| +{g}AspProCysSerPheArg***ProThrPheHisLeuCysAlaValIleLysPhe 301586 : g{A}GACCCGTGTTCCTTCCGTTAGCCAACTTTTCATCTCTGCgctgtaattaaattt : 301639 286 : ArgCysThrMetIleIleCysIleValGlyTyrTyrIleLeuThrGluTrpAlaGluL : 305 ... |||:!:! ! ! .!!:!! !! ! !!!! !|||||| !.!.! GluSerThrLeuAsnAlaLysPheLeuArgValIle***Phe***GluTrpGlnAsnS 301640 : gaatctACTTTAAATGCAAAGTTTTTACGAGTAATTTGATTTTAGGAATGGCAAAATA : 301699 306 : ysAsnValGlnAsnLeuThrThrTyrPheMetMetLeuLeuSerIleCysPheAsnIl : 324 ..:!!..! !:!! !|||!:!|||! :!!||| !|||.!! !|||||||| erAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAsnIl 301700 : GCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATAT : 301756 325 : ePheIleIleCysTyrIleGlyGluIleLeuThrGluGln >>>> Target Intr : 338 |||||||.!!|||||||||||||||||||||:!!|||||| 80 bp ePheIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301757 : ATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt................ : 301800 339 : on 2 >>>> CysMetLysIleGlyGluValValTyrMetThrAspTrpTyrTyrLe : 353 |||! :!!||||||..!!.! !||| !! !||||||||| !!|| ++CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLe 301801 : .........agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTT : 301923 354 : uProAspLysThrIleLeuAsnLeuIleLeuIleIleLeuArgSerThrValValVal : 372 ||||! |||! ! !! !:!!|||||||||:!!! !:!!! !||| ! ! ! ! uProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProPro 301924 : ACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCG : 301980 373 : GlnIleThrAlaGlyLysLeuPheAsnMetSerIleTyrThrPheGlyAsp >>>> : 390 :!!:!!||||||||||||:!!.!!:!!:!:|||:!: !!||||||.!!..! LysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSer++ 301981 : AAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTgt..... : 302036 391 : Target Intron 3 >>>> ValLeuLysThrAlaPheAlaTyrLeuAsnLeuLeu : 401 82 bp |||:!!||||||:!! ! !.!||||||||||||||| ++ValValLysThrSerValValTyrLeuAsnLeuLeu 302037 : ....................agGTGGTGAAAACATCGGTGGTGTACTTGAATTTACTG : 302149 402 : ArgGlnMetThr : 405 ||| !:!:||| ArgThrValThr 302150 : CGAACAGTTACA : 302163 vulgar: AmOr27 180 405 . KQ414889.1 300222 302163 + 242 M 60 180 G 2 0 M 24 72 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 70 210 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300223 302163 242 + . gene_id 18 ; sequence AmOr27 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300223 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300223 300476 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302163 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302163 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300223 302163 242 + . alignment_id 18 ; Query AmOr27 ; Align 300223 181 180 ; Align 300403 243 72 ; Align 301588 268 210 ; Align 301878 338 156 ; Align 302116 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 240 Query range: 336 -> 403 Target range: 264723 -> 265004 337 : GlnCysMetLysIleGlyGluValValTyrMetThrAspTrpTyrTyrLeuProAspL : 356 ||||||! !|||:!!||||||||||||||||||:!!:!!||||||||||||||| !!| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 357 : ysThrIleLeuAsnLeuIleLeuIleIleLeuArgSerThrValValValGlnIleTh : 375 || !||||||:!!||||||||||||||||||||||||!:!|||||| !!:!!.!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 376 : rAlaGlyLysLeuPheAsnMetSerIleTyrThrPheGlyAsp >>>> Target I : 390 ||||||||||:!!.!!:!!||||||!!:|||||||||.!!||| 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 391 : ntron 1 >>>> ValLeuLysThrAlaPheAlaTyrLeuAsnLeuLeuArgGln : 403 bp |||:!!|||:!!:!!|||.!!||||||||||||||||||||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArgGln 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGCCAA : 265004 vulgar: AmOr27 336 403 . KQ414889.1 264723 265004 + 240 M 53 159 5 0 2 I 0 76 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265004 240 + . gene_id 19 ; sequence AmOr27 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265004 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265004 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265004 240 + . alignment_id 19 ; Query AmOr27 ; Align 264724 337 159 ; Align 264963 390 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 236 Query range: 336 -> 393 Target range: 254271 -> 254442 337 : GlnCysMetLysIleGlyGluValValTyrMetThrAspTrpTyrTyrLeuProAspL : 356 ||||||:!!|||:!!|||||||||||||||||||||||||||||||||||||||.!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 357 : ysThrIleLeuAsnLeuIleLeuIleIleLeuArgSerThrValValValGlnIleTh : 375 :!! !||||||:!!||||||||||||||| !||||||!.!|||||||||:!!||||| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 376 : rAlaGlyLysLeuPheAsnMetSerIleTyrThrPheGlyAspValLeuLysThr : 393 ||||||||||:::|||:::||||||:!!|||||||||||||||||| !:!!||| rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThr 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 254442 vulgar: AmOr27 336 393 . KQ414889.1 254271 254442 + 236 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254442 236 + . gene_id 20 ; sequence AmOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254442 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254442 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254442 236 + . alignment_id 20 ; Query AmOr27 ; Align 254272 337 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 228 Query range: 336 -> 396 Target range: 238625 -> 238805 337 : GlnCysMetLysIleGlyGluValValTyrMetThrAspTrpTyrTyrLeuProAspL : 356 ||||||:!!|||:!!|||||||||||||||||||||||||||||||||||||||.!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 357 : ysThrIleLeuAsnLeuIleLeuIleIleLeuArgSerThrValValValGlnIleTh : 375 :!! !||||||:!!||||||||||||||| !||||||!.!|||||||||:!!:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 376 : rAlaGlyLysLeuPheAsnMetSerIleTyrThrPheGlyAspValLeuLysThrAla : 394 ||||||||||:!!!!.:!!||||||:!!|||||||||||||||||| !:!!||| ! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 395 : PheAla : 396 .!!||| LeuAla 238798 : CTTGCT : 238805 vulgar: AmOr27 336 396 . KQ414889.1 238625 238805 + 228 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238805 228 + . gene_id 21 ; sequence AmOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238805 228 + . alignment_id 21 ; Query AmOr27 ; Align 238626 337 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 193 Query range: 335 -> 395 Target range: 283273 -> 283453 336 : GluGlnCysMetLysIleGlyGluValValTyrMetThrAspTrpTyrTyrLeuProA : 355 ..!||||||! |||:!!|||||||||||||||||||||:!!! !!:!|||||||||| ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 356 : spLysThrIleLeuAsnLeuIleLeuIleIleLeuArgSerThrValValValGlnIl : 374 ||||| !||||||||||||:!!|||||||||! !||||||!:!:::|||::::::|| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 375 : eThrAlaGlyLysLeuPheAsnMetSerIleTyrThrPheGlyAspValLeuLysThr : 393 |||||||...||||||......|||||| |||||||||! !||||||! !..! ! eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspValArgSerLeu 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTACGTTCACTT : 283445 394 : AlaPhe : 395 !||| LeuPhe 283446 : CTTTTT : 283453 vulgar: AmOr27 335 395 . KQ414889.1 283273 283453 + 193 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283453 193 + . gene_id 22 ; sequence AmOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283453 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283453 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283453 193 + . alignment_id 22 ; Query AmOr27 ; Align 283274 336 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 182 Query range: 266 -> 340 Target range: 263671 -> 264657 267 : AsnPheIleThrTyrLeuGluAsnIleMetAsnArgIleTyrPheLeuGluLeuPheA : 286 !:!|||||| ! !:!!:!!|||:!:|||!:!! !|||! !|||:!!|||||||||! SerPheIleAspArgIleLysAsnValMetSerThrIleCysPheValGluLeuPheL 263672 : AGTTTCATAGATCGTATTAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCA : 263729 287 : rgCysThrMetIleIleCys{Il} >>>> Target Intron 1 >>>> {e}Va : 294 :!..!|||:!! !||||||{||} 764 bp {|}:! ysAlaThrLeuAspIleCys{Il}+- +-{e}Il 263730 : AGGCTACGCTGGATATATGC{AT}gc.........................aa{T}AT : 264517 295 : lGlyTyrTyrIleLeuThrGluTrpAlaGluLysAsnValGlnAsnLeuThrThrTyr : 313 ! ! ! !!:!!!!! !||||||! !... ! ::::::|||||||||||||||||| eThrIleAspValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyr 264518 : AACAATTGACGTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATAT : 264574 314 : PheMetMetLeuLeuSerIleCysPheAsnIlePheIleIleCysTyrIleGlyGluI : 333 ||||||!!:|||:!!|||!!:||| !|||||||||:!!!!:|||||||||||||||| PheMetIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluI 264575 : TTCATGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGA : 264634 334 : leLeuThrGluGlnCysMetLys : 340 |||||||||||||| :::||| leLeuThrGluGlnValIleLys 264635 : TATTGACTGAGcaggtaattaaa : 264657 vulgar: AmOr27 266 340 . KQ414889.1 263671 264657 + 182 M 26 78 S 0 2 5 0 2 I 0 760 3 0 2 S 1 1 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 263672 264657 182 + . gene_id 23 ; sequence AmOr27 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 263672 263751 . + . KQ414889.1 exonerate:protein2genome:local exon 263672 263751 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263752 263753 . + . intron_id 1 ; splice_site "GC" KQ414889.1 exonerate:protein2genome:local intron 263752 264515 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264514 264515 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 264516 264657 . + . KQ414889.1 exonerate:protein2genome:local exon 264516 264657 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 263672 264657 182 + . alignment_id 23 ; Query AmOr27 ; Align 263672 267 78 ; Align 264517 294 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 16 -> 115 Target range: 299689 -> 299989 17 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuPhe< : 36 |||!!!||||||:!! !!:!|||!!.|||||||||||||||!.!|||! !|||.!. TyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpArgLeuLeuA 299690 : TACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGCGATTGCTAG : 299747 37 : ->SerThrThrThrLysPheGluLysThrValSerLeuIleLeuAsnIleIleCysTy : 54 ..! !:!!!:!|||.!.||| ! !||||||:!!:!!|||! ! !||||||!: spGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMetThrIleCysPh 299748 : ATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATGACAATATGCTT : 299804 55 : rAlaIleValIleLeuCysAlaThrProSerLeuMetGlnIleIleLeuAlaGluGlu : 73 !:!!! !:!!.!!!!! !!.! !|||||| ! ! |||.!!!!!||||||:!! eSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePhePheAlaGluLys 299805 : CTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCTTCGCGGAGAAA : 299861 74 : SerPheTyrLeuLysLeuLysThrLeuGlyProValSerHisTrpPheValSerThrV : 93 |||.!.:!!:!!|||:!!|||..!!!!|||||||||.!! !!! .!! !|||! !| SerIleHisValLysValLysValPheGlyProValGlyPheCysLeuSerSerIleV 299862 : AGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCATCG : 299921 94 : alAsnTyrThrAlaLeuLeuMetLysSerLysAspIleArgTyrCysPheGluHisMe : 112 ||!!.||| ! !|||! !:!!!!..!! ! .!!..! |||.!!:!!|||:! alLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCysIleGlnHisVa 299922 : TCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGCATCCAACACGT : 299978 113 : tGluAlaAsp : 115 :||| !||| lGluArgAsp 299979 : CGAGAGAGAC : 299989 vulgar: AmOr27 16 115 . KQ414889.1 299689 299989 + 174 M 19 57 G 0 3 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299690 299989 174 + . gene_id 24 ; sequence AmOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299690 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299690 299989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299690 299989 174 + . alignment_id 24 ; Query AmOr27 ; Align 299690 17 57 ; Align 299750 36 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 300 -> 337 Target range: 283096 -> 283207 301 : GluTrpAlaGluLysAsnValGlnAsnLeuThrThrTyrPheMetMetLeuLeuSerI : 320 ||||||:!!!!: :!!||||||!.!:!!||||||:!!||||||!!:|||:!!|||! GluTrpSerAspGlyAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 283097 : GAATGGTCTGACGGCGATGTTCAGACTATGACTACGCATTTCATGATCCTTATATCCA : 283154 321 : leCysPheAsnIlePheIleIleCysTyrIleGlyGluIleLeuThrGluGln : 337 !:||||||||||||||| !:!!! !|||||||||:!!||||||||||||||| etCysPheAsnIlePheThrValTyrTyrIleGlyLysIleLeuThrGluGln 283155 : TgtgtttcaacatttttacAGTATACTATATCGGGAAAATACTAACTGAACAG : 283207 vulgar: AmOr27 300 337 . KQ414889.1 283096 283207 + 136 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283097 283207 136 + . gene_id 25 ; sequence AmOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283097 283207 . + . KQ414889.1 exonerate:protein2genome:local exon 283097 283207 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283097 283207 136 + . alignment_id 25 ; Query AmOr27 ; Align 283097 301 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 296 -> 337 Target range: 305088 -> 305211 297 : TyrIleLeuThrGluTrpAlaGluLysAsnValGlnAsnLeuThrThrTyrPheMetM : 316 |||::: !!!:|||! !...!..|||..! !:!|||||||||||| :!!: TyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValL 305089 : tatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGT : 305146 317 : etLeuLeuSerIleCysPheAsnIlePheIleIleCysTyrIleGlyGluIleLeuTh : 335 !:|||:!!|||:!! |||||||||||||||:!!|||||||||||||||||||||! euLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMe 305147 : TACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTAT : 305203 336 : rGluGln : 337 !|||:!! tGluLys 305204 : GGAAAAG : 305211 vulgar: AmOr27 296 337 . KQ414889.1 305088 305211 + 127 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305089 305211 127 + . gene_id 26 ; sequence AmOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305089 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305089 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305089 305211 127 + . alignment_id 26 ; Query AmOr27 ; Align 305089 297 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 300 -> 348 Target range: 224323 -> 224467 301 : GluTrpAlaGluLysAsnValGlnAsnLeuThrThrTyrPheMetMetLeuLeuSerI : 320 ||||||:::......:!!:!! !:! !..!|||||||||!!::!:|||:!!|||: GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 321 : leCysPheAsnIlePheIleIleCysTyrIleGlyGluIleLeuThrGluGlnCysMe : 339 :: |||||||||||||||...|||||||||||||||:!::!!.!!|||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlnValLy 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggtgaa : 224438 340 : tLysIleGlyGluValValTyrMetThr : 348 ...... :::::: ::: ||| sAsnPheLeuLysLeuPhePheThrThr 224439 : aaattttttaaaattattcttcacCACT : 224467 vulgar: AmOr27 300 348 . KQ414889.1 224323 224467 + 122 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224467 122 + . gene_id 27 ; sequence AmOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224324 224467 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224467 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224467 122 + . alignment_id 27 ; Query AmOr27 ; Align 224324 301 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 300 -> 337 Target range: 219328 -> 219439 301 : GluTrpAlaGluLysAsnValGlnAsnLeuThrThrTyrPheMetMetLeuLeuSerI : 320 |||||| !..!!!.:!!||| !!:! !..!||||||.!!!!::!:|||:!!|||: GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 321 : leCysPheAsnIlePheIleIleCysTyrIleGlyGluIleLeuThrGluGln : 337 !: |||||||||||||||...||||||||||||||||||:!!.!!|||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: AmOr27 300 337 . KQ414889.1 219328 219439 + 117 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219439 117 + . gene_id 28 ; sequence AmOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219439 117 + . alignment_id 28 ; Query AmOr27 ; Align 219329 301 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 296 -> 337 Target range: 210651 -> 210774 297 : TyrIleLeuThrGluTrpAlaGluLysAsnValGlnAsnLeuThrThrTyrPheMetM : 316 !:!:!!||| !||||||! !...|||:!! ! !:! ! !||||||.!.:!:: PheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValL 210652 : TTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTAC : 210709 317 : etLeuLeuSerIleCysPheAsnIlePheIleIleCysTyrIleGlyGluIleLeuTh : 335 !:||| !|||:!! |||||||||||||||.!!|||||||||||||||:!:|||.! euLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAl 210710 : TCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGC : 210766 336 : rGluGln : 337 !|||||| aGluGln 210767 : TGAACAg : 210774 vulgar: AmOr27 296 337 . KQ414889.1 210651 210774 + 116 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210652 210774 116 + . gene_id 29 ; sequence AmOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 210652 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210652 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210652 210774 116 + . alignment_id 29 ; Query AmOr27 ; Align 210652 297 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 300 -> 341 Target range: 238411 -> 238534 301 : GluTrpAlaGluLysAsnValGlnAsnLeuThrThrTyrPheMetMetLeuLeuSerI : 320 ||||||||||||!..:!!!.!:!!! !|||! !|||||||||:!: |||:!!:!!| GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheValAlaLeuValAlaI 238412 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTGTAGCACTCGTTGCTA : 238469 321 : leCysPheAsnIlePheIleIleCysTyrIleGlyGluIleLeuThrGluGlnCysMe : 339 || !! !|||! !||||||:!!|||||||||.!!|||! |||||||||||| .. leValSerAsnThrPheIleLeuCysTyrIleSerGluArgLeuThrGluGlnValGl 238470 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGAAAGGCTGACAGAACAGGTACA : 238526 340 : tLysIle : 341 .:!!||| nGluIle 238527 : AGAGATT : 238534 vulgar: AmOr27 300 341 . KQ414889.1 238411 238534 + 114 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238412 238534 114 + . gene_id 30 ; sequence AmOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238412 238534 . + . KQ414889.1 exonerate:protein2genome:local exon 238412 238534 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238412 238534 114 + . alignment_id 30 ; Query AmOr27 ; Align 238412 301 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 336 -> 399 Target range: 292389 -> 292578 337 : GlnCysMetLysIleGlyGluValValTyrMetThrAspTrpTyrTyrLeuProAspL : 356 ||| !!! :!!|||!.!.!.!.! !||| |||!!:|||||| !!|||||| : GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 357 : ysThrIleLeuAsnLeuIleLeuIleIleLeuArgSerThrValValValGlnIleTh : 375 :!! ! !! !:!!:!!:!!|||:!::!! !! !!!!! ! ! !:!!:!!:!!|| rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 376 : rAlaGlyLysLeuPheAsnMetSerIleTyrThrPheGlyAspValLeuLysThrAla : 394 ||||||||||:!!||| !:!:|||:!: !!|||||||||! !|||! !:!!:!! ! rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSerLys 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCAAAA : 292561 395 : PheAlaTyrLeuAsn : 399 .!.!.!! :!!:!! LeuValLeuIleHis 292562 : CTAGTCTTGATACAC : 292578 vulgar: AmOr27 336 399 . KQ414889.1 292389 292578 + 101 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 292578 101 + . gene_id 31 ; sequence AmOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292390 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 292578 101 + . alignment_id 31 ; Query AmOr27 ; Align 292390 337 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 300 -> 337 Target range: 254071 -> 254182 301 : GluTrpAlaGluLysAsnValGlnAsnLeuThrThrTyrPheMetMetLeuLeuSerI : 320 ||||||.!!|||!..:!!!.!|||! ||| !||||||.!!:!:! |||:!!:!!: GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaV 254072 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTG : 254129 321 : leCysPheAsnIlePheIleIleCysTyrIleGlyGluIleLeuThrGluGln : 337 !! ! ||| |||:::||||||||||||.!!!!:! |||||||||||| alValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln 254130 : TTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAG : 254182 vulgar: AmOr27 300 337 . KQ414889.1 254071 254182 + 100 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254072 254182 100 + . gene_id 32 ; sequence AmOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254072 254182 . + . KQ414889.1 exonerate:protein2genome:local exon 254072 254182 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254072 254182 100 + . alignment_id 32 ; Query AmOr27 ; Align 254072 301 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 586 Query range: 0 -> 256 Target range: 204200 -> 204974 1 : MetAlaArgIleArgAsnAlaLysAspGlyIleArgHisThrPheTrpPheAlaTyrP : 20 |||:!! !!||| !!..|||:!!!!:! !:!:|||:!!.!! ! |||!.! ! | MetSerGlyIleAlaArgAlaGluGluAspLeuArgTyrAlaThrArgPheValLysP 204201 : ATGTCTGGAATCGCGAGGGCAGAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGC : 204258 21 : roPheSerArgMetLeuGlyTyrTrpProLeuSerValSerSerSerAlaPheAlaLy : 39 ||.!!! ! !!!!::!!||| ||||||:!! !!|||!:!|||||| !!|||.!!!: roIleLeuGlyIleValGlyAlaTrpProIleProValAsnSerSerProPheThrAr 204259 : CGATTTTAGGGATAGTCGGTGCGTGGCCGATTCCAGTGAACTCCTCTCCGTTCACGAG : 204315 40 : sIleSerAsnTyrPheIleIlePheLeuSerTyrLeuLeuThrLeuIlePheMetVal : 58 !:!! !... .!. ! ! ! :!!!!!|||...||| ...:::.!.!!:||| gLeuValArgArgIleGluHisValValThrTyrPheLeuPhePheLeuMetIleVal 204316 : GCTAGTACGGCGAATAGAACACGTAGTCACCtatttcctcttctttctgaTGATCGTA : 204372 59 : ProGlyLeuLeuTyrIlePheLeuLysValLysAsnGlyArgSerArgIleLysLeuL : 78 |||||||||||||||:!:|||||||||! !|||||||||!:!! !|||:!:|||:!!| ProGlyLeuLeuTyrValPheLeuLysGluLysAsnGlyLysIleArgLeuLysIleL 204373 : CCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTC : 204432 79 : euMetSerHisIleAsnGlyIleValGlnMetAlaLysTyrThrIleLeuLeuArgLy : 97 || ! !! !:!:||| !!! !:!!|||.!. !||||||:!!:!!:!!||| !:: euGlyProIleValAsnCysSerIleGlnPhePheLysTyrSerValIleLeuTyrAr 204433 : TCGGGCCGATCGTGAACTGCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCG : 204489 98 : sThrLysGluIleAlaLysLeuLeuAspGluIleLysLysAspTrpMetThrAlaSer : 116 !! ! ! :!!||| !||| !|||:!! |||!:!:::||||||!!: !|||!!! gIleAspLysIleGlnLysSerLeuAsnThrIleArgArgAspTrpIleGluAlaThr 204490 : GATCGACAAAATTCAGAAGAGTTTGAACACCATCAGACGCGACTGGATAGAGGCTACG : 204546 117 : GluGluAsnArgGlnIlePheSerThrArgAlaSerIleGluHisLysLeuThrMetV : 136 !!:||||||||| !|||||| !!:!!!:!|||!.!|||! !!..!:!:!! !:!!: AspGluAsnArgLeuIlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuI 204547 : GATGAAAATCGGTTGATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGA : 204606 137 : alValValValThrMetTyrGlyGlyGlyPhePheTyrArgAlaIleLeuProLeuSe : 155 !!!.!!.!!.!||||||||||||||||||!!.! !||||||.!!||||||||||||! leAlaAlaAlaThrMetTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLe 204607 : TTGCAGCCGCCACTATGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTT : 204663 156 : rLysGlyLysIleValLeuSerAsnAsnValThrIleArgLeuLeuProCysProGly : 174 !!:!|||! !|||||| ! !!:!!|||||||||||||||! !||||||||||||! ! uArgGlyThrIleValThrProAspAsnValThrIleArgProLeuProCysProVal 204664 : GAGAGGAACGATCGTAACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTT : 204720 175 : TyrPheGlyPheLeuAspGluGlnValSerProAsnTyrGluIleIlePheThrLeuG : 194 |||||| |||...:::|||||| !||||||||||||||||||:!!|||! !|||| TyrPheValPhePheAsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuG 204721 : tactttgttttctttaacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGC : 204780 195 : lnValLeuGlyGlyPheValIleTyrThrAlaValCysGlyThrLysSerIleCysLe : 213 ||:!!:!!!.!|||||||||! !|||.!!!.!:!! !!|||||| .!!!!:||| lnIleMetAlaGlyPheValThrTyrAlaValIleSerGlyThrCysGlyMetCysAl 204781 : AAATTATGGCTGGTTTTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGC : 204837 214 : uMetLeuCysLeuHisMetCysGlyLeuLeuLysIleLeuThrAsnLysValMetGlu : 232 !:!!!!! !|||||| !|||.!!:!!|||!:!||||||..!||||||:!!! ! ! aLeuPheValLeuHisAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAla 204838 : GCTGTTCGTTCTCCACGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCA : 204894 233 : LeuThrAsn<-><->AspLysAspGluLysValValGlnGluLysIleAlaHisIleV : 250 |||..!:!! |||! ! !|||! !:!!|||!!...!||||||||| !!|||| LeuValAspLysAlaAspMetThrGluThrLeuValHisArgLysIleAlaAspIleV 204895 : CTTGTGGATAAGGCGGACATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTG : 204954 251 : alAspTyrGlnThrArgIle : 256 ||!!:|||||||||!:!||| alGluTyrGlnThrLysIle 204955 : TTGAATATCAGACGAAGATA : 204974 vulgar: AmOr12 0 256 . KQ414889.1 204200 204974 + 586 M 235 705 G 0 6 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204201 204974 586 + . gene_id 1 ; sequence AmOr12 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204201 204974 . + . KQ414889.1 exonerate:protein2genome:local exon 204201 204974 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 204201 204974 586 + . alignment_id 1 ; Query AmOr12 ; Align 204201 1 705 ; Align 204912 236 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 253 Query range: 291 -> 381 Target range: 206050 -> 206401 292 : GluTrpGluAspAsnAsnThrMetAlaThrValIlePheValIlePheGlnIleThrC : 311 |||||||||:!!|||||||||! |||..!:!!:!:!:!:!!! !!.||||||:!!| GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 312 : ysPheIleGlyThrPheAlaValCysTyrAlaGlyGlnLeuLeuValAspGlu >>> : 329 || .!! !!..!||| !:!!|||||| !||||||||||||:!!|||:!! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 330 : > Target Intron 1 >>>> SerGluAsnValArgGlnAlaCysSerThrLeuA : 340 81 bp !:!.!. !||| !! !.!!! !!!!|||:!!| ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 341 : snTrpTyrArgLeuProValLysLysAlaArgSerLeuIleLeuLeuIleLeuMetSe : 359 ||||||||||||||||| !!:! ! |||||||||:!!||||||:!!||| !||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 360 : rAsnTyrProIleLysValThrAlaGlyArgIleValAspValSerLeuValThrPhe : 378 ||||||||||||||||:!!|||||||||!:!!!: !!!!::!!||||||!.!!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 379 : ThrSerIle : 381 |||..!:!! ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: AmOr12 291 381 . KQ414889.1 206050 206401 + 253 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 253 + . gene_id 2 ; sequence AmOr12 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 253 + . alignment_id 2 ; Query AmOr12 ; Align 206051 292 111 ; Align 206243 329 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 244 Query range: 22 -> 260 Target range: 221408 -> 222134 23 : ArgMetLeuGlyTyrTrpProLeuSerValSerSerSerAlaPheAlaLysIleSerA : 42 !:! !:!!||| !|||||| !|||!.!!:!! !|||.!! ! ! !!:! ! ! LysProIleGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuT 221409 : AAGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCT : 221466 43 : snTyrPheIleIlePheLeuSerTyrLeuLeuThrLeuIlePheMetValProGlyLe : 61 !!!::.!.|||! ! !!:!!!!!||| !|||! ! !.!!.!!:!!|||||| !! yrTrpLeuIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSe 221467 : ACTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAG : 221523 62 : uLeuTyrIlePheLeuLysValLysAsnGlyArgSerArgIleLysLeuLeuMetSer : 80 !||||||:!:.!!|||:!!|||:!!:!!! ! !!:!||||||||||||||| !! rLeuTyrValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyPro 221524 : CCTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCG : 221580 81 : HisIleAsnGlyIleValGlnMetAlaLysTyrThrIleLeuLeuArgLysThrLysG : 100 ! ! ! !!:!::!! !.!. !|||||| !:!:|||:!!! ! ! !!!.! LeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnA 221581 : TTGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACG : 221640 101 : luIleAlaLysLeuLeuAspGluIleLysLysAspTrpMetThrAlaSer<->GluGl : 118 !:||| !:!!! !:!!!!:...|||:!! !||||||! !!.! !!!! ...:! spIleArgGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLy 221641 : ACATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAA : 221697 119 : uAsnArgGlnIlePheSerThrArgAlaSerIleGluHisLysLeuThrMetValVal : 137 !:!!!:!.!.|||.!.! ! !!.!|||! !.!!! ...::!|||! !|||:!! ! sAspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCys 221698 : GGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGC : 221754 138 : ValValThrMetTyrGlyGlyGlyPhePheTyrArgAlaIleLeuProLeuSerLysG : 157 ..! !! !||||||.!!||| |||||| ! !:!!|||!!!||| !| ThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValG 221755 : ACATTTTTCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGG : 221814 158 : lyLysIleValLeuSerAsn<->AsnValThrIleArgLeuLeuProCysProGlyTy : 175 |||||||| ! !..!:!! |||||||||... ! !:!! !! !||| !! lyLysIleProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSe 221815 : GTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTC : 221871 176 : rPheGlyPheLeuAspGluGlnValSerProAsnTyrGluIleIlePheThrLeuGln : 194 !.!!:!!||| !:! !|||||| !!||||||:!:|||:!!|||||| rArgPheIleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGln 221872 : GAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAA : 221928 195 : ValLeuGlyGlyPheValIleTyrThrAlaValCysGlyThrLysSerIleCysLeuM : 214 :!!:!!!.!||| !:!!!!::!!!:! !..!! !.!.!! |||:!: ! !| IleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaM 221929 : ATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTA : 221988 215 : etLeuCysLeuHisMetCysGlyLeuLeuLysIleLeuThrAsnLysValMetGluLe : 233 ||!!!..!:!!||| ||||||! !:!!:!!:!:|||! !!:! !:!!! .!.|| etPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLe 221989 : TGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTT : 222045 234 : uThrAsnAspLysAspGluLysVal<-><->ValGlnGluLysIleAlaHisIleVal : 250 |! !|||! !::!! !!:! ! ! |||.!...!!:!|||||| ! |||||| uIleAsnGlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleVal 222046 : GATCAACGGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTG : 222102 251 : AspTyrGlnThrArgIleIleGluPheLeu : 260 :!! ! !!...!||||||:!::!!!:!:!! AsnGlnHisValArgIleLeuGlnTyrVal 222103 : AATCAACACGTTCGAATATTGCAGTATGTA : 222134 vulgar: AmOr12 22 260 . KQ414889.1 221408 222134 + 244 M 94 282 G 0 3 M 47 141 G 0 3 M 78 234 G 0 6 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221409 222134 244 + . gene_id 3 ; sequence AmOr12 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221409 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221409 222134 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221409 222134 244 + . alignment_id 3 ; Query AmOr12 ; Align 221409 23 282 ; Align 221694 117 141 ; Align 221838 164 234 ; Align 222078 242 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 22 -> 240 Target range: 262879 -> 263539 23 : ArgMetLeuGlyTyrTrpProLeuSerValSerSerSerAlaPheAlaLysIleSerA : 42 !:! !:!!||| ||||||||||||!.!|||! !||| !.!.! !::!|||! ! LysProIleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleT 262880 : AAACCGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCT : 262937 43 : snTyrPheIleIlePheLeuSerTyrLeuLeuThrLeuIlePheMetValProGlyLe : 61 !:!.!!:!!||| !!:!!!!!|||! !|||! !||| ! !:!::!!|||..!:! rpPheLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIl 262938 : GGTTTCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCAT : 262994 62 : uLeuTyrIlePheLeuLysValLysAsnGlyArgSerArgIleLysLeuLeuMetSer : 80 !|||:!!||| !!|||:!!!.!:!!||| !!.!! !!:!:!::!!:!!||| !! eLeuHisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyPro 262995 : ACTTCATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCG : 263051 81 : HisIleAsnGlyIleValGlnMetAlaLysTyrThrIleLeuLeuArgLysThrLysG : 100 ! ! !.!. !!.!!||| ||| !!!.|||||| ||||||! ! ! !:!|||! LeuGlyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysA 263052 : CTCGGTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAG : 263111 101 : luIleAlaLysLeuLeuAspGluIleLysLysAspTrpMetThrAlaSerGluGluAs : 119 !:||| ! ! !:!!.!..!.:!::!!:!!|||||| ! !!.!!!!..! !.! spIleGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGl 263112 : ATATACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGA : 263168 120 : nArgGlnIlePheSerThrArgAlaSerIleGluHisLysLeuThrMetValValVal : 138 . !||| !.!!! ! !!:! !:!!! ! ! !:::! !..! !.! ! ! uAspGlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCys 263169 : GGATCAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGC : 263225 139 : ValThrMetTyrGlyGlyGlyPhePheTyrArgAlaIleLeuProLeuSerLysGlyL : 158 !.!! !.!. ! !.!!.!!.!.! !!:!..!:!!:!! !! !! !! !: AlaIlePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrG 263226 : GCGATCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACAC : 263285 159 : ysIleValLeuSerAsnAsnValThr<-><->IleArgLeuLeuProCysProGlyTy : 175 !!:!::!! !..!..!|||! !||| :!!|||:!!||||||||||||! !|| lnValIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTy 263286 : AGGTGATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTA : 263342 176 : rPheGlyPheLeuAspGluGlnValSerProAsnTyrGluIleIlePheThrLeuGln : 194 | ! !.!!:!! ! .!...!!:!|||!.. !!||||||.!!.!!.!! !||| rLysGluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGln 263343 : CAAAGAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAA : 263399 195 : ValLeuGlyGlyPheValIleTyrThrAlaValCysGlyThrLysSerIleCysLeuM : 214 !!|||..!||||||:!!:!! !.!!.!!..! !|||.!! .!!!!: !: PheLeuSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaV 263400 : TTTCTGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGG : 263459 215 : etLeuCysLeuHisMetCysGlyLeuLeuLysIleLeuThrAsnLysValMetGluLe : 233 !!!!!..! !||| ||||||! !|||!!.:!:|||! !::! !:!!! !|||!! alPheAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPh 263460 : TGTTCGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATT : 263516 234 : uThrAsnAspLysAspGluLys : 240 !..!|||.!.... !!::!! eValAsnGlnSerArgAspGlu 263517 : CGTGAACCAGTCCAGGGATGAG : 263539 vulgar: AmOr12 22 240 . KQ414889.1 262879 263539 + 205 M 144 432 G 0 6 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262880 263539 205 + . gene_id 4 ; sequence AmOr12 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262880 263539 . + . KQ414889.1 exonerate:protein2genome:local exon 262880 263539 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262880 263539 205 + . alignment_id 4 ; Query AmOr12 ; Align 262880 23 432 ; Align 263318 167 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 326 -> 381 Target range: 301871 -> 302036 327 : AspGluSerGluAsnValArgGlnAlaCysSerThrLeuAsnTrpTyrArgLeuProV : 346 ||| !!!!!....!.:!! !!..!|||! ! ! !:!!:!!||||||!.!||||||! Asp***CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProA 301872 : GATTAGTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAG : 301929 347 : alLysLysAlaArgSerLeuIleLeuLeuIleLeuMetSerAsnTyrProIleLysVa : 365 .!|||!:!||| !..!||||||||||||! !:!!!!:|||.!.|||||| |||:! laLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLe 301930 : CGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACT : 301986 366 : lThrAlaGlyArgIleValAspValSerLeuValThrPheThrSerIle : 381 !|||||||||!:!|||:!!|||:!!|||||| !||||||!:!|||:!! uThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301987 : TACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: AmOr12 326 381 . KQ414889.1 301871 302036 + 135 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301872 302036 135 + . gene_id 5 ; sequence AmOr12 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301872 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301872 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301872 302036 135 + . alignment_id 5 ; Query AmOr12 ; Align 301872 327 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 338 -> 391 Target range: 280306 -> 280465 339 : LeuAsnTrpTyrArgLeuProValLysLysAlaArgSerLeuIleLeuLeuIleLeuM : 358 :!!:!!|||||||||||||||! !|||||||||!:!.!!|||||||||:!!.!! !: IleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaV 280307 : ATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCG : 280364 359 : etSerAsnTyrProIleLysValThrAlaGlyArgIleValAspValSerLeuValTh : 377 !!||||||! ! !!||||||:!!|||||||||!:!|||:!!|||:!!|||||| !!: alSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSe 280365 : TGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAG : 280421 378 : rPheThrSerIleIleLysAsnSerValGlyTyrMetAsnIle : 391 !||| !|||:!:! !! ! !:!:!!..!||| :!!:!: rPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280422 : CTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: AmOr12 338 391 . KQ414889.1 280306 280465 + 133 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280307 280465 133 + . gene_id 6 ; sequence AmOr12 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280307 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280307 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280307 280465 133 + . alignment_id 6 ; Query AmOr12 ; Align 280307 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 328 -> 381 Target range: 305624 -> 305783 329 : SerGluAsnValArgGlnAlaCysSerThrLeuAsnTrpTyrArgLeuProValLysL : 348 |||...!:!||| !! !:!!|||! !! !:!!!:!||||||!.!||||||..!|||! SerSerSerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysT 305625 : AGCAGTAGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGA : 305682 349 : ysAlaArgSerLeuIleLeuLeuIleLeuMetSerAsnTyrProIleLysValThrAl : 367 ! !!.!.!!|||||||||:!!||| !||||||!:! !!||| !|||:!!!:!|| hrIleHisGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAl 305683 : CGATACATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGC : 305739 368 : aGlyArgIleValAspValSerLeuValThrPheThrSerIle : 381 ||||!:!:!!||||||:!!|||||| !|||||| !!:!:!: aGlyLysValValAspLeuSerLeuSerThrPheGlyAsnVal 305740 : TGGTAAAGTAGTTGATTTATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: AmOr12 328 381 . KQ414889.1 305624 305783 + 132 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305625 305783 132 + . gene_id 7 ; sequence AmOr12 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305625 305783 132 + . alignment_id 7 ; Query AmOr12 ; Align 305625 329 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 338 -> 391 Target range: 287093 -> 287252 339 : LeuAsnTrpTyrArgLeuProValLysLysAlaArgSerLeuIleLeuLeuIleLeuM : 358 :!!:!!|||||||||||||||! !|||! !|||!:!.!!|||||||||:!!.!! !: IleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaV 287094 : ATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCG : 287151 359 : etSerAsnTyrProIleLysValThrAlaGlyArgIleValAspValSerLeuValTh : 377 !!||||||! ! !!||||||:!!|||||||||!:!|||:!!|||:!!|||||| !!: alSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSe 287152 : TGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAG : 287208 378 : rPheThrSerIleIleLysAsnSerValGlyTyrMetAsnIle : 391 !||| !|||:!:! !! ! !:!:!!..!||| :!!:!: rPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 287209 : CTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 287252 vulgar: AmOr12 338 391 . KQ414889.1 287093 287252 + 127 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287094 287252 127 + . gene_id 8 ; sequence AmOr12 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287094 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287094 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287094 287252 127 + . alignment_id 8 ; Query AmOr12 ; Align 287094 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 327 -> 381 Target range: 292389 -> 292551 328 : GluSerGluAsnValArgGlnAlaCysSerThrLeuAsnTrpTyrArgLeuProValL : 347 :!!.!!....!.:!! !!!.|||! !! ! ! !.!.||||||!.!|||||| !: GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 348 : ysLysAlaArgSerLeuIleLeuLeuIleLeuMetSerAsnTyrProIleLysValTh : 366 :!|||||||||..!:!!:!!|||:!!:!! !!!:!!!!!.:!!|||||||||:!!|| rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 367 : rAlaGlyArgIleValAspValSerLeuValThrPheThrSerIle : 381 |||||||!:!||| !!! !:!!|||||| !|||||| !:!!:!! rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaVal 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTA : 292551 vulgar: AmOr12 327 381 . KQ414889.1 292389 292551 + 113 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 292551 113 + . gene_id 9 ; sequence AmOr12 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292390 292551 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 292551 113 + . alignment_id 9 ; Query AmOr12 ; Align 292390 328 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 319 -> 381 Target range: 224472 -> 224658 320 : TyrAlaGlyGlnLeuLeuValAspGluSerGluAsnValArgGlnAlaCysSerThrL : 339 ||| ! !..!|||!!! !! ::: |||...::: |||!.!! ! !! !: TyrPheLeuSerLeuPhePheProGlnCysGluLysIleGlyGlnValSerTyrMetI 224473 : TATTTTTTATCGCTATTTTTTCCtcagtgtgaaaaaattggacaAGTGTCGTACATGA : 224530 340 : euAsnTrpTyrArgLeuProValLysLysAlaArgSerLeuIleLeuLeuIleLeuMe : 358 !!:!!|||||||||||| !!! !!!.||| !! !!!!! !||||||:!!||| !|| leAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMe 224531 : TCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGAT : 224587 359 : tSerAsnTyrProIleLysValThrAlaGlyArgIleValAspValSerLeuValThr : 377 |||||||! ! !!||||||:!!|||||||||!.!!!:|||!!::!!!!!|||..!||| tSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThr 224588 : GTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACT : 224644 378 : PheThrSerIle : 381 ||| !..!:!! PheGlyAspVal 224645 : TTCGGTGACGTA : 224658 vulgar: AmOr12 319 381 . KQ414889.1 224472 224658 + 110 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224473 224658 110 + . gene_id 10 ; sequence AmOr12 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224473 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224473 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224473 224658 110 + . alignment_id 10 ; Query AmOr12 ; Align 224473 320 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 338 -> 381 Target range: 219542 -> 219671 339 : LeuAsnTrpTyrArgLeuProValLysLysAlaArgSerLeuIleLeuLeuIleLeuM : 358 :!!.!.|||||||||||| !!! !|||||| !! !!!! !:!!||| !||| !| IleGluTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaM 219543 : ATCGAATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTA : 219600 359 : etSerAsnTyrProIleLysValThrAlaGlyArgIleValAspValSerLeuValTh : 377 ||||||||! ! !!||||||:!!|||||||||!.!!!:|||!!::!!|||:!! !|| etSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerTh 219601 : TGTCGAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCAC : 219657 378 : rPheThrSerIle : 381 |||||||..!:!: rPheThrAspVal 219658 : TTTTACCGACGTG : 219671 vulgar: AmOr12 338 381 . KQ414889.1 219542 219671 + 104 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219543 219671 104 + . gene_id 11 ; sequence AmOr12 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219543 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219543 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219543 219671 104 + . alignment_id 11 ; Query AmOr12 ; Align 219543 339 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 339 -> 386 Target range: 238661 -> 238802 340 : AsnTrpTyrArgLeuProValLysLysAlaArgSerLeuIleLeuLeuIleLeuMetS : 359 :!!|||||| !|||||| !!:!!:! !! !..!|||||||||:!!||| ! | AspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgS 238662 : GATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGAT : 238719 360 : erAsnTyrProIleLysValThrAlaGlyArgIleValAspValSerLeuValThrPh : 378 ||||| !:!!|||||||||||||||!:!:!!:!! !!:!!|||||| !||||| erAsnValValValLysValThrAlaGlyLysValLeuHisMetSerLeuTyrThrPh 238720 : CGAACGTGGTCGTTAAAGTCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTT : 238776 379 : eThrSerIleIleLysAsnSerVal : 386 | !..!:!!! !:!!!.!!:!:!! eGlyAspValSerGluThrAsnLeu 238777 : CGGCGATGTAAGTGAAACTAATCTT : 238802 vulgar: AmOr12 339 386 . KQ414889.1 238661 238802 + 102 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238662 238802 102 + . gene_id 12 ; sequence AmOr12 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238662 238802 . + . KQ414889.1 exonerate:protein2genome:local exon 238662 238802 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238662 238802 102 + . alignment_id 12 ; Query AmOr12 ; Align 238662 340 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 327 -> 381 Target range: 264723 -> 264885 328 : GluSerGluAsnValArgGlnAlaCysSerThrLeuAsnTrpTyrArgLeuProValL : 347 :!!!!!:!!!!.||| !!:!!!.! !! !! !! !||||||||| !|||||| !| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 348 : ysLysAlaArgSerLeuIleLeuLeuIleLeuMetSerAsnTyrProIleLysValTh : 366 || ! !! !..!|||||||||:!!||||||! |||!:! !.!!||| !!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 367 : rAlaGlyArgIleValAspValSerLeuValThrPheThrSerIle : 381 |||||||!:!|||:!! !!:!!|||:!! !||||||!:!..!:!! rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: AmOr12 327 381 . KQ414889.1 264723 264885 + 102 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264885 102 + . gene_id 13 ; sequence AmOr12 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264885 102 + . alignment_id 13 ; Query AmOr12 ; Align 264724 328 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 339 -> 384 Target range: 235021 -> 235156 340 : AsnTrpTyrArgLeuProValLysLysAlaArgSerLeuIleLeuLeuIleLeuMetS : 359 .!.||||||||||||||| !|||! |||! !.!!|||:!!:!!:!!|||! !! !| GluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgS 235022 : GAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGT : 235079 360 : erAsnTyrProIleLysValThrAlaGlyArgIleValAspValSerLeuValThrPh : 378 ||!:! !||||||:!!|||||||||!:!.!!:!!.!.:!!|||:!!!.!||||| erSerMetValIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPh 235080 : CGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATT : 235136 379 : eThrSerIleIleLysAsn : 384 | !..!:!:! !! ||| eGlyAspValSerIleAsn 235137 : TGGCGATGTGAGTATTAAT : 235156 vulgar: AmOr12 339 384 . KQ414889.1 235021 235156 + 100 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 235022 235156 100 + . gene_id 14 ; sequence AmOr12 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 235022 235156 . + . KQ414889.1 exonerate:protein2genome:local exon 235022 235156 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 235022 235156 100 + . alignment_id 14 ; Query AmOr12 ; Align 235022 340 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr11 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 547 Query range: 0 -> 255 Target range: 204200 -> 204977 1 : MetValGlnIleArgAsnAlaLysGluGlyLeuLysHisThrPheTrpPheAlaTyrP : 20 ||| ! !||| !!..|||:!!|||! !|||!:!:!!.!! ! |||!.! ! | MetSerGlyIleAlaArgAlaGluGluAspLeuArgTyrAlaThrArgPheValLysP 204201 : ATGTCTGGAATCGCGAGGGCAGAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGC : 204258 21 : roPheSerArgThrLeuGlyTyrTrpProLeu<->ValSerProSerAlaPheThrLy : 38 ||.!!! ! !!! !:!!||| ||||||:!! |||!:! !!||| !!||||||!: roIleLeuGlyIleValGlyAlaTrpProIleProValAsnSerSerProPheThrAr 204259 : CGATTTTAGGGATAGTCGGTGCGTGGCCGATTCCAGTGAACTCCTCTCCGTTCACGAG : 204315 39 : sPhePheAsnSerPheThrIlePheThrLeuTyrPheLeuGluLeuIleValLeuIle : 57 !.!. ! ... !!.!. ! ! ! ..! !||||||||| ...::::!!:!!:!! gLeuValArgArgIleGluHisValValThrTyrPheLeuPhePheLeuMetIleVal 204316 : GCTAGTACGGCGAATAGAACACGTAGTCACCtatttcctcttctttctgaTGATCGTA : 204372 58 : ProGlyLeuLeuTyrVal<->LeuGlnValLysAsnProArgThrLysIleLysLeuL : 76 |||||||||||||||||| |||:!!! !|||||| !!:!! !::::!:|||:!!| ProGlyLeuLeuTyrValPheLeuLysGluLysAsnGlyLysIleArgLeuLysIleL 204373 : CCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTC : 204432 77 : euMetProHisLeuAsnSerIleAlaGlnMetAlaLysTyrThrIleIleLeuGlnAr : 95 || !||| !:!!|||!!!! ! !|||.!. !||||||:!!:!!|||||| ! || euGlyProIleValAsnCysSerIleGlnPhePheLysTyrSerValIleLeuTyrAr 204433 : TCGGGCCGATCGTGAACTGCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCG : 204489 96 : gAlaLysGluPheSerLysLeuLeuAspGluIleLysLysAspTrpLeuLeuAlaThr : 114 | ! ! :!!.!!..!||| !|||:!! |||!:!:::||||||:!! !|||||| gIleAspLysIleGlnLysSerLeuAsnThrIleArgArgAspTrpIleGluAlaThr 204490 : GATCGACAAAATTCAGAAGAGTTTGAACACCATCAGACGCGACTGGATAGAGGCTACG : 204546 115 : GluGluAsnArgGlnIlePheSerGluArgAlaSerIleGluHisLysLeuThrThrV : 134 !!:||||||||| !|||||| !!..!!:!|||!.!|||! !!..!:!:!! ! !: AspGluAsnArgLeuIlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuI 204547 : GATGAAAATCGGTTGATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGA : 204606 135 : alIleValValThrMetTyrGlyGlyGlyPhePheTyrArgThrIleLeuProLeuSe : 153 !! !!.!!.!||||||||||||||||||!!.! !|||||||||||||||||||||! leAlaAlaAlaThrMetTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLe 204607 : TTGCAGCCGCCACTATGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTT : 204663 154 : rLysGlyLysIleLeuLeuProAsnAsnMetThrValArgLeuLeuProCysProSer : 172 !!:!|||! !|||:!! !|||:!!|||:!:|||:!!|||! !|||||||||||| ! uArgGlyThrIleValThrProAspAsnValThrIleArgProLeuProCysProVal 204664 : GAGAGGAACGATCGTAACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTT : 204720 173 : TyrPheGlySerLeuAsnGluGlnAlaThrProAsnTyrGluIleIlePheThrLeuG : 192 |||||| ...||||||||| !:!!|||||||||||||||:!!|||! !|||| TyrPheValPhePheAsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuG 204721 : tactttgttttctttaacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGC : 204780 193 : lnValLeuGlyGlyPheIleIleTyrThrValLeuCysGlyThrLysSerAlaCysLe : 211 ||:!!:!!!.!||||||:!!! !|||.!!|||:!! !!|||||| .!! !||| lnIleMetAlaGlyPheValThrTyrAlaValIleSerGlyThrCysGlyMetCysAl 204781 : AAATTATGGCTGGTTTTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGC : 204837 212 : uMetLeuCysLeuHisMetCysGlyLeuLeuLysIleLeuThrAsnLysValMetAsp : 230 !:!!!!! !|||||| !|||.!!:!!|||!:!||||||..!||||||:!!! ! aLeuPheValLeuHisAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAla 204838 : GCTGTTCGTTCTCCACGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCA : 204894 231 : LeuThrAsnAspSerAsp<-><->GluGlnValValGlnGluLysIleValHisIleV : 248 |||..!:!! ! :!!||| ||| !:!!|||!!...!||||||!.! !!|||| LeuValAspLysAlaAspMetThrGluThrLeuValHisArgLysIleAlaAspIleV 204895 : CTTGTGGATAAGGCGGACATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTG : 204954 249 : alGluTyrGlnThrArgIleLys : 255 ||||||||||||||!:!|||||| alGluTyrGlnThrLysIleLys 204955 : TTGAATATCAGACGAAGATAAAG : 204977 vulgar: AmOr11 0 255 . KQ414889.1 204200 204977 + 547 M 30 90 G 0 3 M 33 99 G 0 3 M 173 519 G 0 6 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204201 204977 547 + . gene_id 1 ; sequence AmOr11 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204201 204977 . + . KQ414889.1 exonerate:protein2genome:local exon 204201 204977 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 204201 204977 547 + . alignment_id 1 ; Query AmOr11 ; Align 204201 1 90 ; Align 204294 31 99 ; Align 204396 64 519 ; Align 204921 237 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr11 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 275 Query range: 255 -> 394 Target range: 291134 -> 293248 256 : GluPheLeuAsnGlnLeuAspGlnPheValProAlaIleTyrLeuIleGluValValI : 275 ..!||| !!....!:!!!!:... :!!! !! !|||!:!||||||||||||:!!: ArgPheThrArgMetIleGluSerAlaLeuHisGluIlePheLeuIleGluValIleV 291135 : agATTCACGAGGATGATCGAAAGCGCGTTGCATGAAATATTCTTGATAGAAGTAATAG : 291192 276 : leGlnValLeuIleIleCysIleIleGlyTyrCysIleIleMet >>>> Target : 290 !!.....!:!!:!!:!!|||:!:|||! !||| !:!!!!:||| 13 alSerThrValLeuLeuCysLeuIleGluTyrLeuLeuMetMet++ 291193 : TATCCACTGTGTTACTATGCTTGATCGAATATCTCTTAATGATGgt............ : 291239 291 : Intron 1 >>>> GluTrpGluAspSerAsnAlaMetAlaMetValIleTyrValV : 304 2 bp |||||||||..!|||:!!:!!!!:!.!!!::!!! !||||||. ++GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValT 291240 : .............agGAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCA : 291411 305 : alPheGlnValThrCysValIleGlyThrPheSerValCysTyrValGlyGlnLeuLe : 323 .!.!!! ..!:!!! !..!.!!..!! !.!.! ! !!||||||||||||:!!||||| hrLeuLeuThrSerPheThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLe 291412 : CTCTCCTCACTTCTTTCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCT : 291468 324 : uLeuAspGlu >>>> Target Intron 2 >>>> SerGluAsnIleArgGlnA : 333 ||||! :!! 913 bp .!!....!.||| !!!.| uLeuGlyGln++ ++GlySerGluIleAlaHisA 291469 : TCTTGGACAGgt.........................agGGTAGTGAAATCGCGCACG : 292411 334 : laTyrAsnThrLeuAsnTrpTyrArgLeuProValLysLysAlaArgSerLeuIleLe : 352 ||! ! !! ! !.!.||||||!.!|||||| !::!|||||||||..!:!!:!!|| laSerTyrAspThrGluTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLe 292412 : CTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCT : 292468 353 : uLeuIleLeuMetSerHisTyrProIleLysValThrAlaGlyArgIleMetAspLeu : 371 |:!!:!! !!!:!!! ! :!!|||||||||:!!|||||||||!:!|||.!.! !||| uValLeuAlaIleThrLysHisProIleLysLeuThrAlaGlyLysIlePheValLeu 292469 : GGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTC : 292525 372 : SerLeuValThrPheThrSer >>>> Target Intron 3 >>>> IleIleLy : 381 |||||| !|||||| !:!! 652 bp :!::!:|| SerLeuAsnThrPheGlyAla++ ++ValLeuLy 292526 : TCGTTGAACACTTTTGGCGCTgt.........................agGTGCTGAA : 293207 382 : sSerAlaValGlyTyrMetAsnMetLeuArgThrValThr : 394 ||||:!!|||! !||||||||||||||||||||||||||| sSerSerValValTyrMetAsnMetLeuArgThrValThr 293208 : ATCGTCGGTAGTTTACATGAACATGCTACGAACCGTCACT : 293248 vulgar: AmOr11 255 394 . KQ414889.1 291134 293248 + 275 M 34 102 5 0 2 I 0 128 3 0 2 M 37 111 5 0 2 I 0 909 3 0 2 M 52 156 5 0 2 I 0 648 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291135 293248 275 + . gene_id 2 ; sequence AmOr11 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291135 291236 . + . KQ414889.1 exonerate:protein2genome:local exon 291135 291236 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291237 291238 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291237 291368 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 291367 291368 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292548 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292548 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 292549 292550 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 292549 293200 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 293199 293200 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 293201 293248 . + . KQ414889.1 exonerate:protein2genome:local exon 293201 293248 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291135 293248 275 + . alignment_id 2 ; Query AmOr11 ; Align 291135 256 102 ; Align 291369 290 111 ; Align 292393 327 156 ; Align 293201 379 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr11 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 245 Query range: 289 -> 379 Target range: 206050 -> 206401 290 : GluTrpGluAspSerAsnAlaMetAlaMetValIleTyrValValPheGlnValThrC : 309 |||||||||:!!!:!|||.!!! |||:!::!!:!:|||:!!..!!!.|||:!!:!!| GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 310 : ysValIleGlyThrPheSerValCysTyrValGlyGlnLeuLeuLeuAspGlu >>> : 327 ||..!.!! !!..!|||! !:!!||||||:!!||||||||||||:!!|||:!! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 328 : > Target Intron 1 >>>> SerGluAsnIleArgGlnAlaTyrAsnThrLeuA : 338 81 bp !:!.!. !:!: !! !.!!! ! !|||:!!| ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 339 : snTrpTyrArgLeuProValLysLysAlaArgSerLeuIleLeuLeuIleLeuMetSe : 357 ||||||||||||||||| !!:! ! |||||||||:!!||||||:!!||| !||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 358 : rHisTyrProIleLysValThrAlaGlyArgIleMetAspLeuSerLeuValThrPhe : 376 |:!!||||||||||||:!!|||||||||!:!!!:.!.!!::!!||||||!.!!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 377 : ThrSerIle : 379 |||..!:!! ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: AmOr11 289 379 . KQ414889.1 206050 206401 + 245 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 245 + . gene_id 3 ; sequence AmOr11 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 245 + . alignment_id 3 ; Query AmOr11 ; Align 206051 290 111 ; Align 206243 327 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr11 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 226 Query range: 70 -> 233 Target range: 284706 -> 285207 71 : ThrLysIleLysLeuLeuMetProHisLeuAsnSerIleAlaGlnMetAlaLysTyrT : 90 ||||||||||||:!!:!! |||! ! !!!!!!: ! ! ! !|||||| ThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleLysTyrT 284707 : ACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATT : 284764 91 : hrIleIleLeuGlnArgAlaLysGluPheSerLysLeuLeuAspGluIleLysLysAs : 109 !|||:!!:!!..!|||!.! :!!.!!.!!:!!! !:!! ! !!:|||::: !|| yrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIleArgAlaAs 284765 : ACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGA : 284821 110 : pTrpLeuLeu<-><-><-><->AlaThrGluGluAsnArgGlnIlePheSerGluArg : 124 ||||! !||| ::: ||||||...|||:::|||.!.!!!!!:!!! pTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMetArgAspSer 284822 : CTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGC : 284878 125 : AlaSerIleGluHisLysLeuThrThrValIleValValThrMetTyrGlyGlyGlyP : 144 |||!!!|||! !!.....|||.!!! ! !! !!.!! ! !||||||..!||||||| AlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyP 284879 : GCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGAT : 284938 145 : hePheTyrArgThrIleLeuProLeuSerLysGlyLysIleLeuLeuProAsnAsnMe : 163 ||||||||! !|||:!::!!||||||!!!! !! !:::! !:!! !:!!||| hePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIleAspAsnGl 284939 : TTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGA : 284995 164 : tThrValArgLeuLeuProCysProSerTyrPheGlySerLeuAsnGluGlnAlaThr : 182 !|||||||||! !! ! !!! !|||! !||| !||| !|||:!! !!::.!!!:! uThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSer 284996 : GACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGC : 285052 183 : ProAsnTyrGluIleIlePheThrLeuGlnValLeuGlyGlyPheIleIleTyrThrV : 202 |||:::!:!||||||:!: !:!!||| !|||!.!!.!|||:!!||||||:!!| ProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerV 285053 : CCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGG : 285112 203 : alLeuCysGlyThrLysSerAlaCysLeuMetLeuCysLeuHisMetCysGlyLeuLe : 221 || ! !|||.!! ||| !..! !:!!!!! !:!!|||:!:||||||! !!! alThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPh 285113 : TCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATT : 285169 222 : uLysIleLeuThrAsnLysValMetAspLeuThrAsn : 233 !!:!||||||..!!..|||:!! ! |||..!:!! eArgIleLeuValThrLysLeuAspLysLeuValAsp 285170 : TAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGAC : 285207 vulgar: AmOr11 70 233 . KQ414889.1 284706 285207 + 226 M 42 126 G 0 12 M 121 363 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284707 285207 226 + . gene_id 4 ; sequence AmOr11 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284707 285207 . + . KQ414889.1 exonerate:protein2genome:local exon 284707 285207 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284707 285207 226 + . alignment_id 4 ; Query AmOr11 ; Align 284707 71 126 ; Align 284845 113 363 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr11 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 211 Query range: 70 -> 228 Target range: 278759 -> 279245 71 : ThrLysIleLysLeuLeuMetProHisLeuAsnSerIleAlaGlnMetAlaLysTyrT : 90 ||||||||||||:!!:!! |||! ! !!!!! ! !! ! !|||||| ThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrIleLysTyrT 278760 : ACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATT : 278817 91 : hrIleIleLeuGlnArgAlaLysGluPheSerLysLeuLeuAspGluIleLysLysAs : 109 !|||:!!:!!..!|||!.! :!!.!!.!!|||! !:!!:!!!!:|||:::! !|| yrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAs 278818 : ACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGA : 278874 110 : pTrpLeuLeuAla<-><-><-><->ThrGluGluAsnArgGlnIlePheSerGluArg : 124 ||||! !|||.!! ||||||...|||:::|||.!.!!!!!:!!! pTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMetArgAspSer 278875 : CTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGC : 278931 125 : AlaSerIleGluHisLysLeuThrThrValIleValValThrMetTyrGlyGlyGlyP : 144 |||!!!|||! !!.....|||.!!! ! !!! !!.!! ! !||||||..!|||||| AlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyV 278932 : GCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAG : 278991 145 : hePheTyrArgThrIleLeuProLeuSerLysGlyLysIleLeuLeuProAsnAsnMe : 163 !!||||||! !.!!:!::!!||||||! ! !! !:::! !:!! !:!!||| alPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIleAspAsnGl 278992 : TTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGA : 279048 164 : tThrValArgLeuLeuProCysProSerTyrPheGlySerLeuAsnGluGlnAlaThr : 182 |||||||||! !! ! !!! !|||! !||| !||| !|||:!! !!::.!!!:! uThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSer 279049 : AACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGC : 279105 183 : ProAsnTyrGluIleIlePheThrLeuGlnValLeuGlyGlyPheIleIleTyrThrV : 202 |||:::!:!||||||:!: !:!!||| !|||!.!!.!|||:!!:!!|||:!!| ProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerV 279106 : CCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGG : 279165 203 : alLeuCysGlyThrLysSerAlaCysLeuMetLeuCysLeuHisMetCysGlyLeuLe : 221 || ! !|||.!! ||| ! ! !:!!!!! !:!!|||:!:||||||! !!! alThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCysGlyGlnPh 279166 : TCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATT : 279222 222 : uLysIleLeuThrAsnLysVal : 228 !!:!||||||..!!..|||:!! eArgIleLeuValThrLysLeu 279223 : CAGGATACTTGTGACAAAGCTG : 279245 vulgar: AmOr11 70 228 . KQ414889.1 278759 279245 + 211 M 43 129 G 0 12 M 115 345 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278760 279245 211 + . gene_id 5 ; sequence AmOr11 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278760 279245 . + . KQ414889.1 exonerate:protein2genome:local exon 278760 279245 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278760 279245 211 + . alignment_id 5 ; Query AmOr11 ; Align 278760 71 129 ; Align 278901 114 345 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr11 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 196 Query range: 20 -> 238 Target range: 274407 -> 275073 21 : PheSerArgThrLeuGlyTyrTrpProLeuValSerProSerAla<->PheThrLysP : 39 |||! !!:! !!:!!||| |||||||||!.!||||||!!!.!! ||| !::!. PheLeuLysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgI 274408 : TTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAA : 274465 40 : hePheAsnSerPheThrIlePheThrLeuTyrPheLeuGluLeuIleValLeuIlePr : 58 !!.!!::: !... |||||| |||! !!!! !||| !..!:!!||||| leLeuSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIlePr 274466 : TCCTTTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCC : 274522 59 : oGlyLeuLeuTyrValLeuGlnVal<->LysAsnProArgThrLysIleLysLeuLeu : 76 |.!!:!!!!!:!!:!!:!!! !||| :!!!:!! !!.! !|||:!:||||||||| oSerIlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeu 274523 : AAGCATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTC : 274579 77 : MetProHisLeuAsnSerIleAlaGlnMetAlaLysTyrThrIleIleLeuGlnArgA : 96 |||! ! !:!!!!!.!! ! ! !!!.||||||! :!:|||! !|||: GlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgS 274580 : GGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCA : 274639 97 : laLysGluPheSerLysLeuLeuAspGluIleLysLysAspTrpLeuLeuAlaThrGl : 115 :!||||||.!. !! ! !:!!!!:.!.!!::!!! !|||||| !:!!!.!|||.. erLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrAr 274640 : GCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAG : 274696 116 : u<->GluAsnArgGlnIlePheSerGluArgAlaSerIleGluHisLysLeuThrThr : 133 ! |||:!!!:!|||:!:.!.! !:!!!.!|||!.!|||! !.! ! :!!.!!! ! gProGluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIle 274697 : ACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATC : 274753 134 : ValIleValValThrMetTyrGlyGlyGlyPhePheTyrArgThrIleLeuProLeuS : 153 !! !!.!!.! !||| ! !!|||! !.!!! !||| !!..!||| ! !!!!!! PheCysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheT 274754 : TTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCA : 274813 154 : erLysGlyLysIleLeuLeuProAsn<->AsnMetThrValArgLeuLeuProCysPr : 171 !!! ! !! :!!! !:!! !||| !.!! ||||||!.!:!!||||||||| hrMetGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLy 274814 : CTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAA : 274870 172 : oSerTyrPheGlySerLeuAsnGluGlnAlaThrProAsnTyrGluIleIlePheThr : 190 !:!!||| !! !:!! ! !.!..!!!:!|||!.. !!||||||:!!.!!.!! sAlaTyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValLeuAla 274871 : AGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCC : 274927 191 : LeuGlnValLeuGlyGlyPheIleIleTyrThrValLeuCysGlyThrLysSerAlaC : 210 ! !||| !!:!!..!|||||||||:!: !!:!! ! ! !|||.!! ||| !. SerGlnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuA 274928 : TCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTG : 274987 211 : ysLeuMetLeuCysLeuHisMetCysGlyLeuLeuLysIleLeuThrAsnLysValMe : 229 .! !:!!!!!... !||| ! !|||! !|||!..:!:|||! !! !:!!! laAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleTh 274988 : CCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCAC : 275044 230 : tAspLeuThrAsnAspSerAspGluGln : 238 !!:!!!..!||| !!||| !!:||| rGluPheValAsnHisSerArgAspGln 275045 : CGAGTTTGTGAATCATTCCAGGGAtcag : 275073 vulgar: AmOr11 20 238 . KQ414889.1 274407 275073 + 196 M 15 45 G 0 3 M 31 93 G 0 3 M 49 147 G 0 3 M 46 138 G 0 3 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274408 275073 196 + . gene_id 6 ; sequence AmOr11 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274408 275073 . + . KQ414889.1 exonerate:protein2genome:local exon 274408 275073 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274408 275073 196 + . alignment_id 6 ; Query AmOr11 ; Align 274408 21 45 ; Align 274456 36 93 ; Align 274552 67 147 ; Align 274702 116 138 ; Align 274843 162 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr11 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 189 Query range: 248 -> 379 Target range: 224116 -> 224658 249 : GluTyrGlnThrArgIleLysGluPheLeuAsnGlnLeuAspGlnPheValProAlaI : 268 !!:! !:::!!!:! ! ..!||||||!..!!. !!!::!! :!!! ! !: AspLeuArgSerLysCysCysArgPheLeuThrHisThrGluLysAlaLeuGlnGlnV 224117 : GATTTACGTTCGAAATGTTGCAGATTTTTAACGCACACAGAGAAAGCACTGCAACAAG : 224174 269 : leTyrLeuIleGluValValIleGlnValLeuIleIleCysIleIleGlyTyrCysIl : 287 !!! !!!:!:||| !!:!! ! :!!|||! !||||||:!!:!!||||||! !:! alSerPheValGluPheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrVa 224175 : TATCGTTCGTGGAATTTCTAGGCTGCATGTTGAACATATGTCTTCTCGGGTATTACGT : 224231 288 : eIleMet >>>> Target Intron 1 >>>> GluTrpGluAspSerAsnAlaM : 297 !|||:!! 84 bp ||||||......|||:!! !! lIleVal++ ++GluTrpSerSerSerHisLeuT 224232 : TATTGTGgt.........................aggagtggagttcgagtcATTTAA : 224345 298 : etAlaMetValIleTyrValValPheGlnValThrCysValIleGlyThrPheSerVa : 316 ::! !|||! !||| !!:!!.!.! :!!:!: ......... ||| hrSerAlaValThrTyrPheIleLeuLeuMetSerLeuThrPheAsnIlePheIlePh 224346 : CTAGCGCGGTGACTTACTTCATACTACTCATGTCtcttactttcaatatttttatatt : 224402 317 : lCysTyrValGlyGlnLeuLeuLeuAspGlu >>>> Target Intron 2 >>>> : 327 ||||||::!|||:!!|||:!! !!!:::: 65 bp eCysTyrIleGlyGluLeuValAlaGluGln++ 224403 : ttgttacatAGGAGAGCTGGTAGCTGAAcaggt......................... : 224437 328 : SerGluAsnIleArgGlnAlaTyrAsnThrLeuAsnTrpTyrArgLeuProValLy : 345 |||...||| |||!.!! !!! !:!!:!!|||||||||||| !!! !!! ++CysGluLysIleGlyGlnValSerTyrMetIleAspTrpTyrArgLeuThrGlyAs 224438 : agtgtgaaaaaattggacaAGTGTCGTACATGATCGACTGGTATCGGTTGACTGGAAA : 224554 346 : sLysAlaArgSerLeuIleLeuLeuIleLeuMetSerHisTyrProIleLysValThr : 364 .||| !! !!!!! !||||||:!!||| !||||||:!!! ! !!||||||:!!||| nLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuThr 224555 : TAAGAAACTATGCTGCATTCTGATAATCGCGATGTCCAATTCTTCGATAAAATTGACA : 224611 365 : AlaGlyArgIleMetAspLeuSerLeuValThrPheThrSerIle : 379 ||||||!.!!!::!:!!:|||!!!|||..!|||||| !..!:!! AlaGlyAsnMetValGluLeuCysLeuThrThrPheGlyAspVal 224612 : GCGGGAAACATGGTCGAACTGTGTCTAACCACTTTCGGTGACGTA : 224658 vulgar: AmOr11 248 379 . KQ414889.1 224116 224658 + 189 M 41 123 5 0 2 I 0 80 3 0 2 M 37 111 5 0 2 I 0 61 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224117 224658 189 + . gene_id 7 ; sequence AmOr11 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224117 224239 . + . KQ414889.1 exonerate:protein2genome:local exon 224117 224239 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224240 224241 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224240 224323 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224322 224323 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224117 224658 189 + . alignment_id 7 ; Query AmOr11 ; Align 224117 249 123 ; Align 224324 290 111 ; Align 224500 327 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr11 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 20 -> 254 Target range: 266661 -> 267384 21 : PheSerArgThrLeuGlyTyrTrpProLeuValSerProSerAlaPheThrLysPheP : 40 ||| !!:! !!:!!||| !||||||! !:!!|||! !!!!:!! !:!! . PheLeuLysProIleGlyAlaTrpProProLeuSerLeuThrSerLysLeuGluArgI 266662 : TTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCACATCTAAACTCGAACGAA : 266719 41 : heAsnSerPheThrIlePheThrLeu<->TyrPheLeuGluLeuIleValLeuIlePr : 58 !! !|||!:!.!!:!:.!!..!:!! |||! !! ! !|||.!!..!:!!||||| leValSerTyrAlaLeuIleValIleCysTyrCysSerIleLeuPheThrValIlePr 266720 : TCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATACTGTTCACCGTAATCCC : 266776 59 : oGlyLeuLeuTyr<->ValLeuGlnValLysAsnProArgThrLysIleLysLeuLeu : 76 | !!|||!!!:!! ||||||:!!! !:!!!:! !|||||||||:!:|||:!!!!! oCysLeuPheHisLeuValLeuGluAspGluSerIleArgThrLysValLysValPhe 266777 : TTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTACGAAAGTGAAGGTGTTC : 266833 77 : MetProHisLeuAsnSerIleAlaGlnMetAlaLysTyrThrIleIleLeuGlnArgA : 96 |||! !:!!!!!.!!!.! ! !!!.||||||! !:!:|||! !|||: GlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrThrThrLeuLeuLeuArgS 266834 : GGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACACCACACTGTTGCTACGCA : 266893 97 : laLysGluPheSerLysLeuLeuAspGluIleLysLysAspTrpLeuLeuAlaThrGl : 115 :!||||||.!. !! ! !:!!!!:.!.!!::!!! !|||||| !:!!!.!|||.. erLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrAr 266894 : GCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGATTGGAGGATCGTGACCAG : 266950 116 : u<->GluAsnArgGlnIlePheSerGluArgAlaSerIleGluHisLysLeuThrThr : 133 ! |||:!!!:!|||:!:.!.! !:!!!.!|||!!!|||! !.! ! :!!.!!! ! gProGluAspLysGlnValMetLeuLysAsnAlaArgIleGlyArgTyrIleAlaIle 266951 : ACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCGGTCGTTACATTGCTATA : 267007 134 : ValIleValValThrMetTyrGlyGlyGlyPhePheTyrArgThrIleLeuProLeuS : 153 !! !!.!!.! !||| ! !!|||! !.!! !||| !!..!||| ! !!!!!! PheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCysValIleThrAlaPheT 267008 : TTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGTGATAACGGCGTTCA : 267067 154 : erLysGlyLysIleLeuLeuProAsn<->AsnMetThrValArgLeuLeuProCysPr : 171 !!! ! !! :!: !:!! !||| !.!! !! !|||!.!|||||||||||| ! hrMetGlnThrValGluValGlyAsnGluThrArgIleValHisLeuLeuProCysAl 267068 : CTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTACATCTGTTGCCCTGTGC : 267124 172 : oSerTyrPheGlySerLeuAsnGluGlnAlaThrProAsnTyrGluIleIlePheThr : 190 ! !||| !! !:!! ! .!..!!!:!|||!.. !!||||||:!!.!!..! aValTyrLysLysMetIleAlaValAspThrSerProThrAsnGluIleValLeuVal 267125 : AGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGAACGAGATTGTCCTTGTT : 267181 191 : LeuGlnValLeuGlyGlyPheIleIleTyrThrValLeuCysGlyThrLysSerAlaC : 210 ! !||| !!:!!..!|||||||||:!: !!:!! !:!! !|||.!! ||| !. SerGlnPheValSerGlyPheIleValAsnSerSerValValGlyAlaPheSerLeuA 267182 : TCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCGGTGCTTTCAGCCTTG : 267241 211 : ysLeuMetLeuCysLeuHisMetCysGlyLeuLeuLysIleLeuThrAsnLysValMe : 229 .! !:!!!!!... !||| !||||||! !|||!..:!:|||! !! !:!!! laAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerValLeuMetMetTrpIleLy 267242 : CCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTGATGATGTGGATCAA : 267298 230 : tAspLeuThrAsn<-><-><->AspSerAspGluGlnValValGlnGluLysIleVal : 245 !!!:!!!..!||| ||||||:!!:!!.!.||| ! !!:||||||! ! sGluPheValAsnArgSerArgAspSerAsnLysAsnValCysPheAspLysIleGly 267299 : GGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTTGCTTCGATAAGATTGGC : 267355 246 : HisIleValGluTyrGlnThrArgIle : 254 :!!||||||:!!!!. !|||:!! ValValValGluHisHisLeuArgVal 267356 : GTGGTCGTTGAACATCATCTGAGAGTT : 267384 vulgar: AmOr11 20 254 . KQ414889.1 266661 267384 + 180 M 28 84 G 0 3 M 14 42 G 0 3 M 53 159 G 0 3 M 46 138 G 0 3 M 72 216 G 0 9 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266662 267384 180 + . gene_id 8 ; sequence AmOr11 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266662 267384 . + . KQ414889.1 exonerate:protein2genome:local exon 266662 267384 . + . insertions 21 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266662 267384 180 + . alignment_id 8 ; Query AmOr11 ; Align 266662 21 84 ; Align 266749 49 42 ; Align 266794 63 159 ; Align 266956 116 138 ; Align 267097 162 216 ; Align 267322 234 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr11 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 169 Query range: 289 -> 394 Target range: 272836 -> 273302 290 : GluTrpGluAspSerAsnAlaMetAlaMetValIleTyrValValPheGlnValThrC : 309 |||||| ||| !:!! !..!::!:!:..!! ||| !!:!!.!.! :!!:!! GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 310 : ysValIleGlyThrPheSerValCysTyrValGlyGlnLeuLeuLeuAspGlu >>> : 327 ......... ||| |||||||||:!!|||:!!:!!||| !!!:..! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 328 : > Target Intron 1 >>>> SerGluAsnIleArgGlnAlaTyrAsnThrLeuA : 338 70 bp :::...||| :!!!.! ! !!! ! !| ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 339 : snTrpTyrArgLeuProValLysLysAlaArgSerLeuIleLeuLeuIleLeuMetSe : 357 |||||||| !||||||! !||| ! !! !..!|||||||||:!!|||! !! !! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 358 : rHisTyrProIleLysValThrAlaGlyArgIleMetAspLeuSerLeuValThrPhe : 376 ! ! ! !||||||:!!|||||||||||||||:!: !:!!|||:!! !|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 377 : ThrSer >>>> Target Intron 2 >>>> IleIleLysSerAlaValGlyTy : 386 !..! 81 bp :::!!:||||||||| !!!.!|| GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 387 : rMetAsnMetLeuArgThrValThr : 394 |:!:|||||||||||| !..!||| rLeuAsnMetLeuArgGlnThrThr 273277 : CTTAAATATGCTACGACAAACGACA : 273302 vulgar: AmOr11 289 394 . KQ414889.1 272836 273302 + 169 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273302 169 + . gene_id 9 ; sequence AmOr11 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273302 169 + . alignment_id 9 ; Query AmOr11 ; Align 272837 290 111 ; Align 273018 327 156 ; Align 273255 379 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr11 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 22 -> 238 Target range: 262879 -> 263539 23 : ArgThrLeuGlyTyrTrpProLeu<->ValSerProSerAlaPheThrLysPhePheA : 41 !:! !!:!!||| ||||||||| !.!||| !||| !.!. !::!.!!.!! LysProIleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleT 262880 : AAACCGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCT : 262937 42 : snSerPheThrIlePheThrLeuTyrPheLeuGluLeuIleValLeuIleProGlyLe : 60 ! !.!! !||| !!..!! !|||! !||| !||| !..!:!!||||||..!:! rpPheLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIl 262938 : GGTTTCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCAT : 262994 61 : uLeuTyr<->ValLeuGlnValLysAsnProArgThrLysIleLysLeuLeuMetPro : 78 !|||:!! ||||||:!!!.!:!!||| !!.!! !|||:!::!!:!!||| ||| eLeuHisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyPro 262995 : ACTTCATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCG : 263051 79 : HisLeuAsnSerIleAlaGlnMetAlaLysTyrThrIleIleLeuGlnArgAlaLysG : 98 ! ! !.!.!!!.!!!.! ||| !!!.|||||| :!:|||! !.!::!|||! LeuGlyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysA 263052 : CTCGGTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAG : 263111 99 : luPheSerLysLeuLeuAspGluIleLysLysAspTrpLeuLeuAlaThrGlu<->Gl : 116 !:.!...! ! !:!!.!..!.:!::!!:!!||||||! !:!!!.!|||..! || spIleGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGl 263112 : ATATACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGA : 263168 117 : uAsnArgGlnIlePheSerGluArgAlaSerIleGluHisLysLeuThrThrValIle : 135 |:!!!:!!::|||.!. !:!!!.!|||!.! !! !.! ! :!!.!!.!! ! ! uAspGlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCys 263169 : GGATCAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGC : 263225 136 : ValValThrMetTyrGlyGlyGlyPhePheTyrArgThrIleLeuProLeuSerLysG : 155 !.!:!! !||| ! !.!! !.!.! ! ! !! !:!! ! !!!!!!!!! ! AlaIlePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrG 263226 : GCGATCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACAC : 263285 156 : lyLysIleLeuLeuProAsnAsnMetThrVal<->ArgLeuLeuProCysProSerTy : 173 ! !||| ! ! !|||.!.! ! !:!! |||:!!|||||||||||| !|| lnValIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTy 263286 : AGGTGATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTA : 263342 174 : rPheGlySerLeuAsnGluGlnAlaThrProAsnTyrGluIleIlePheThrLeuGln : 192 | ! !! !:!! ! .!..!!!.!|||!.. !!||||||.!!.!!.!! !||| rLysGluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGln 263343 : CAAAGAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAA : 263399 193 : ValLeuGlyGlyPheIleIleTyrThrValLeuCysGlyThrLysSerAlaCysLeuM : 212 !!|||..!|||||||||:!! !.!!..! ! !|||.!! .!! ! !: PheLeuSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaV 263400 : TTTCTGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGG : 263459 213 : etLeuCysLeuHisMetCysGlyLeuLeuLysIleLeuThrAsnLysValMetAspLe : 231 !!!!!..! !||| ||||||! !|||!!.:!:|||! !::! !:!!! !!!:!! alPheAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPh 263460 : TGTTCGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATT : 263516 232 : uThrAsnAspSerAspGluGln : 238 !..!|||.!.||| !!::!! eValAsnGlnSerArgAspGlu 263517 : CGTGAACCAGTCCAGGGATGAG : 263539 vulgar: AmOr11 22 238 . KQ414889.1 262879 263539 + 158 M 8 24 G 0 3 M 32 96 G 0 3 M 53 159 G 0 3 M 50 150 G 0 3 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262880 263539 158 + . gene_id 10 ; sequence AmOr11 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262880 263539 . + . KQ414889.1 exonerate:protein2genome:local exon 262880 263539 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262880 263539 158 + . alignment_id 10 ; Query AmOr11 ; Align 262880 23 24 ; Align 262907 31 96 ; Align 263006 63 159 ; Align 263168 116 150 ; Align 263321 166 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr11 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 289 -> 379 Target range: 277371 -> 277713 290 : GluTrpGluAspSerAsnAlaMetAlaMetValIleTyrValValPheGlnValThrC : 309 ||||||...||||||:!!!.!..!.!!|||..!! :!! !!:!!.!!! :!!:!! GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 310 : ysValIleGlyThrPheSerValCysTyrValGlyGlnLeuLeuLeuAspGlu >>> : 327 ...... |||::!|||||||||:!!|||:!!:!!||| !!!::!! etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 328 : > Target Intron 1 >>>> SerGluAsnIleArgGlnAlaTyrAsnThrLeuA : 338 72 bp !!!:!!!!.:!! !!:!!!.! ! !!! ! !| ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 339 : snTrpTyrArgLeuProValLysLysAlaArgSerLeuIleLeuLeuIleLeuMetSe : 357 |||||||| !||||||! !||| ! !! !!:!|||:!!|||:!!|||! !! || snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 358 : rHisTyrProIleLysValThrAlaGlyArgIleMetAspLeuSerLeuValThrPhe : 376 | ! ||||||:::|||||||||:::::::::...:::|||:!! !|||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 377 : ThrSerIle : 379 !..!:!! GlyAspVal 277703 : GGCGATGTA : 277713 vulgar: AmOr11 289 379 . KQ414889.1 277371 277713 + 154 M 37 111 5 0 2 I 0 68 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277713 154 + . gene_id 11 ; sequence AmOr11 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277713 154 + . alignment_id 11 ; Query AmOr11 ; Align 277372 290 111 ; Align 277555 327 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr11 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 324 -> 379 Target range: 301871 -> 302036 325 : AspGluSerGluAsnIleArgGlnAlaTyrAsnThrLeuAsnTrpTyrArgLeuProV : 344 ||| !!!!!....!.||| !!..!|||! !! !:!!:!!||||||!.!||||||! Asp***CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProA 301872 : GATTAGTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAG : 301929 345 : alLysLysAlaArgSerLeuIleLeuLeuIleLeuMetSerHisTyrProIleLysVa : 363 .!|||!:!||| !..!||||||||||||! !:!!!!:|||!!.|||||| |||:! laLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLe 301930 : CGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACT : 301986 364 : lThrAlaGlyArgIleMetAspLeuSerLeuValThrPheThrSerIle : 379 !|||||||||!:!|||!!:|||||||||||| !||||||!:!|||:!! uThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301987 : TACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: AmOr11 324 379 . KQ414889.1 301871 302036 + 136 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301872 302036 136 + . gene_id 12 ; sequence AmOr11 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301872 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301872 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301872 302036 136 + . alignment_id 12 ; Query AmOr11 ; Align 301872 325 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr11 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 337 -> 393 Target range: 235021 -> 235260 338 : AsnTrpTyrArgLeuProValLysLysAlaArgSerLeuIleLeuLeuIleLeuMetS : 357 .!.||||||||||||||| !|||! |||! !.!!|||:!!:!!:!!|||! !! !| GluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgS 235022 : GAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGT : 235079 358 : erHisTyrProIleLysValThrAlaGlyArgIleMetAspLeuSerLeuValThrPh : 376 || ! !||||||:!!|||||||||!:!.!!:!:.!.:!!|||:!!!.!||||| erSerMetValIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPh 235080 : CGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATT : 235136 377 : eThrSer >>>> Target Intron 1 >>>> IleIleLysSerAlaValGlyT : 386 | !..! 71 bp :!!.!!|||:!!:!! !!!.!| eGlyAsp++ ++ValPheLysAlaSerPheAlaT 235137 : TGGCGATgt.........................agGTATTTAAGGCGTCTTTCGCCT : 235237 387 : yrMetAsnMetLeuArgThrVal : 393 ||.!.||||||:!!||||||||| yrPheAsnMetIleArgThrVal 235238 : ACTTCAACATGATCCGCACAGTT : 235260 vulgar: AmOr11 337 393 . KQ414889.1 235021 235260 + 128 M 41 123 5 0 2 I 0 67 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 235022 235260 128 + . gene_id 13 ; sequence AmOr11 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 235022 235144 . + . KQ414889.1 exonerate:protein2genome:local exon 235022 235144 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 235145 235146 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 235145 235215 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 235214 235215 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 235216 235260 . + . KQ414889.1 exonerate:protein2genome:local exon 235216 235260 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 235022 235260 128 + . alignment_id 13 ; Query AmOr11 ; Align 235022 338 123 ; Align 235216 379 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr11 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 336 -> 389 Target range: 280306 -> 280465 337 : LeuAsnTrpTyrArgLeuProValLysLysAlaArgSerLeuIleLeuLeuIleLeuM : 356 :!!:!!|||||||||||||||! !|||||||||!:!.!!|||||||||:!!.!! !: IleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaV 280307 : ATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCG : 280364 357 : etSerHisTyrProIleLysValThrAlaGlyArgIleMetAspLeuSerLeuValTh : 375 !!|||:!!! ! !!||||||:!!|||||||||!:!|||!!:|||||||||||| !!: alSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSe 280365 : TGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAG : 280421 376 : rPheThrSerIleIleLysSerAlaValGlyTyrMetAsnMet : 389 !||| !|||:!:! !! ! ! !:!!..!||| :!!:!! rPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280422 : CTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: AmOr11 336 389 . KQ414889.1 280306 280465 + 127 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280307 280465 127 + . gene_id 14 ; sequence AmOr11 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280307 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280307 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280307 280465 127 + . alignment_id 14 ; Query AmOr11 ; Align 280307 337 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr11 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 22 -> 235 Target range: 236882 -> 237527 23 : ArgThrLeuGlyTyrTrpProLeuValSerProSerAlaPheThrLysPhePheAsnS : 42 !:!!:!:!!||| ||||||! ! !!||| !!!:! ! ! !!!..!!! !...! LysSerIleGlyThrTrpProGlnPheSerSerAsnLeuGluArgAsnIleSerArgI 236883 : AAAAGCATAGGCACATGGCCACAGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAA : 236940 43 : erPheThrIlePheThrLeuTyrPheLeuGluLeuIleValLeuIleProGlyLeuLe : 61 !!!.!.!:!:.!! !! ! ! :!! !!!! :!!:!! ! !..!|||! leLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHi 236941 : TATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCA : 236997 62 : uTyrValLeuGlnValLysAsnProArgThrLysIleLysLeuLeuMetProHisLeu : 80 ! :!!|||:!! ! !!.! ! !||||||:!:|||:!!||| !! ! sLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuSer 236998 : CCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGC : 237054 81 : AsnSerIleAlaGlnMetAlaLysTyrThrIleIleLeuGlnArgAlaLysGluPheS : 100 :!!!!!:!: ! !!: !!..||||||!!::!:|||! !||| !||| .!. HisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleA 237055 : CACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATAC : 237114 101 : erLysLeuLeuAspGluIleLysLysAspTrpLeuLeuAlaThr<->GluGluAsnAr : 118 !! ! !!!!!!:!!.!.!!::!!! |||||| ! !.!!||| :::|||...:: rgHisPhePheAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLy 237115 : GTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaa : 237171 119 : gGlnIlePheSerGluArgAlaSerIleGluHisLysLeuThrThrValIleValVal : 137 :::::::.!.! !:!! !|||!.!.!!...!.. ! !.!!! ! ! !..!:!! sGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIle 237172 : agaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATC : 237228 138 : ThrMetTyrGlyGlyGlyPhePheTyrArgThrIleLeuProLeuSerLysGlyLysI : 157 !!!::!!|||||| !.!! ||| !!..!!!: ! !!! !!!!! ! ! : PheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaSerThrThrMetValV 237229 : TTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTG : 237288 158 : leLeuLeuProAsnAsnMetThrVal<->ArgLeuLeuProCysProSerTyrPheGl : 175 !!:!!:!! !|||!!.! |||:!! |||:!!||||||! |||! !||| || alValValGlyAsnLysThrThrIleLeuArgValLeuProLeuProMetTyrLysGl 237289 : TCGTGGTTGGAAACAAGACTACGATCTTGCGCGTGCTGCCCTTACCAATGTACAAAGG : 237345 176 : ySerLeuAsnGluGlnAlaThrProAsnTyrGluIleIlePheThrLeuGlnValLeu : 194 | !||| ! .!..!!!.! !!! !!!!:|||:!! !! !! !||| !!||| yLeuLeuProValAspThrAsnThrMetAsnAspIleValValLeuSerGlnPheLeu 237346 : GCTCCTTCCAGTCGATACGAATACTATGAACGACATCGTTGTTTTGTCACAATTTCTC : 237402 195 : GlyGlyPheIleIleTyrThrValLeuCysGlyThrLysSerAlaCysLeuMetLeuC : 214 ..!||||||||| !!!.! ! ! !.!!..!! !||| ! ! ||| SerGlyPheIleAlaAsnAsnSerAlaIleSerValIleSerLeuThrSerAlaLeuT 237403 : TCCGGATTTATAGCGAACAACAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAA : 237462 215 : ysLeuHisMetCysGlyLeuLeuLysIleLeuThrAsnLysValMetAspLeuThrAs : 233 ! !||| !! !|||! !|||!..:!::!!! ! ..!:!! |||!!!..!!: hrSerHisAlaSerGlyGlnLeuSerValValMetLeuSerIleGluAspPheValSe 237463 : CATCACACGCGTCTGGCCAGTTGAGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAG : 237519 234 : nAspSer : 235 !!!::!! rGluAla 237520 : TGAAGCG : 237527 vulgar: AmOr11 22 235 . KQ414889.1 236882 237527 + 125 M 92 276 G 0 3 M 51 153 G 0 3 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236883 237527 125 + . gene_id 15 ; sequence AmOr11 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236883 237527 . + . KQ414889.1 exonerate:protein2genome:local exon 236883 237527 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 236883 237527 125 + . alignment_id 15 ; Query AmOr11 ; Align 236883 23 276 ; Align 237162 115 153 ; Align 237318 166 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr11 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 336 -> 389 Target range: 287093 -> 287252 337 : LeuAsnTrpTyrArgLeuProValLysLysAlaArgSerLeuIleLeuLeuIleLeuM : 356 :!!:!!|||||||||||||||! !|||! !|||!:!.!!|||||||||:!!.!! !: IleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaV 287094 : ATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCG : 287151 357 : etSerHisTyrProIleLysValThrAlaGlyArgIleMetAspLeuSerLeuValTh : 375 !!|||:!!! ! !!||||||:!!|||||||||!:!|||!!:|||||||||||| !!: alSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSe 287152 : TGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAG : 287208 376 : rPheThrSerIleIleLysSerAlaValGlyTyrMetAsnMet : 389 !||| !|||:!:! !! ! ! !:!!..!||| :!!:!! rPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 287209 : CTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 287252 vulgar: AmOr11 336 389 . KQ414889.1 287093 287252 + 121 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287094 287252 121 + . gene_id 16 ; sequence AmOr11 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287094 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287094 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287094 287252 121 + . alignment_id 16 ; Query AmOr11 ; Align 287094 337 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr11 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 337 -> 379 Target range: 264759 -> 264885 338 : AsnTrpTyrArgLeuProValLysLysAlaArgSerLeuIleLeuLeuIleLeuMetS : 357 ||||||||| !|||||| !||| ! !! !..!|||||||||:!!||||||! | AsnTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLeuIleIleLeuArgS 264760 : AATTGGTATTACTTACCCTACAAAGATATCCTTGATCTGATTCTCATCATTTTAAGAT : 264817 358 : erHisTyrProIleLysValThrAlaGlyArgIleMetAspLeuSerLeuValThrPh : 376 || ! !.!!||| !!|||||||||!:!|||:!: !!:!!|||:!! !||||| erSerValValPheLysPheThrAlaGlyLysIleLeuHisMetSerMetTyrThrPh 264818 : CCAGCGTGGTGTTTAAATTCACCGCTGGAAAGATACTTCACATGTCCATGTACACATT : 264874 377 : eThrSerIle : 379 |!:!..!:!! eSerAspVal 264875 : CAGTGACGTA : 264885 vulgar: AmOr11 337 379 . KQ414889.1 264759 264885 + 102 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264760 264885 102 + . gene_id 17 ; sequence AmOr11 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264760 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264760 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264760 264885 102 + . alignment_id 17 ; Query AmOr11 ; Align 264760 338 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1198 Query range: 1 -> 403 Target range: 217132 -> 219803 2 : SerSerValLysIleAspGlnAspTyrLysSerAsnValAsnLeuSerIleLysTyrS : 21 ..!||| !!:!! !||| ! !!:|||:::...|||:::||||||||||||:!!!::! GlnSerProArgThrAspTyrGluTyrGluLysAsnIleAsnLeuSerIleGlnTrpA 217133 : CAATCCCCCAGAACCGACTACGAgtacgagaaaaatataaatctcaGTATCCAATGGA : 217190 22 : erArgArgIleSerLysMetIleGlyLeuTrpProIlePheAspLysIleSerThrIl : 40 :!||| !!:!:! !||| !!!:||||||||||||! !! !! ! !!!!! ! snArgTrpLeuLeuLysProMetGlyLeuTrpProAsnSerArgThrThrThrArgSe 217191 : ATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACTCACGTACCACCACCAGATC : 217247 41 : eHisLysPheLeuArgMetLeuTyrAsnThrIleCysTyrCysLeuLeuMetPheMet : 59 !!..|||.!!||| !! ||| |||.!!:!!|||||| !!|||:!!! |||:!: rArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeu 217248 : CCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTA : 217304 60 : IleValLeuGlyTrpMetTyrIleAlaPheGluValLysAsnIleTyrAspGlyLeuL : 79 .!!|||! ! !!! ||||||:!: !.!!||||||:!!:!!:!!|||||| !|||| PheValProCysSerMetTyrValPheLeuGluValGluAspLeuTyrAspLysLeuL 217305 : TTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGA : 217364 80 : ysPheValSerLeuMetSerPheCysMetLeuSerIleThrLysTyrHisLeuIleAs : 98 ||.!. !!.!!! !:!!! !||||||:!!:!!:!!.!!..!||||||:!!! !:!:! ysLeuPheGlyProLeuIlePheCysValMetAlaPheValLysTyrTyrSerLeuIl 217365 : AACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGAT : 217421 99 : nIleHisLysAspAspValArgGluCysValLysArgIleGluTrpAspTrpLysAsn : 117 !:!!||||||! |||:!!||||||||||||!:!||||||||| !!||||||!:!||| eValHisLysAlaAspIleArgGluCysValArgArgIleGluArgAspTrpArgAsn 217422 : CGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAAT : 217478 118 : IleSerTyrSerGluAspArgGluIleMetLeuMetAsnAlaAsnPheGlyLysArgL : 137 :!!!!!! !..!:!!||||||||| |||:!!:!!|||||||||||||||:::!:!| ValArgCysGluLysAspArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysL 217479 : GTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAAT : 217538 138 : euIleIleValThrThrThrValThrTyrSerGlyPheValPhePheTyrIleAlaIl : 156 ||:!!:!!:!! !||| ! !!! !||||||||||||||||||:::||||||||||| euValLeuLeuCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIl 217539 : TGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcgttttttattacatCGCTAT : 217595 157 : eProMetLysIleGlyLysIleProAlaProAspAlaAsnIleSerPheIleProThr : 175 ||||!!:!..:!:|||!:!|||! !:!! !:!!!.!|||:!!!!!||||||||| ! eProIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeu 217596 : ACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTG : 217652 176 : MetPheProPheProLysTyrIleAlaAspValArgTyrSerProIleAsnGluIleV : 195 :!!||||||||| !!||||||||| !|||..!||||||!!!|||! |||||||||| ValPheProPheThrLysTyrIleIleAspThrArgTyrThrProThrAsnGluIleV 217653 : GTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCTACGAACGAAATTG : 217712 196 : alPhePhePheGlnPheMetCysGlyPheLeuValHisGlyValThrSerSerAlaCy : 214 ||||||||.!!|||!!.!!:..!||| !|||:!!||||||:!!||||||:!!||||| alPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCy 217713 : TGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTG : 217769 215 : sSerLeuAlaAlaIlePheThrValHisAlaCysGlyGlnIleGlnValMetMetIle : 233 ||||||||||||| !|||.!!|||||||||||||||||||||:!!|||:!!|||! ! sSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGluValLeuMetAsn 217770 : CAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAAC : 217826 234 : TrpLeuGluHisLeuIleGluGlyArgLeuAspMetCysTyrSerValAspGlnArgI : 253 ||||||:!!|||||||||!!:|||||| !|||||| !! !!!!!|||||| |||| TrpLeuGlnHisLeuIleAspGlyArgAlaAspMetSerAspThrValAspGlyArgI 217827 : TGGCTGCAACATTTAATCGACGGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAA : 217886 254 : leAlaLysIleValSerGlnHisValArgIleLeu{Ly} >>>> Target Intro : 265 |||||!..|||||||||||||||||||||||||||{||} 1229 bp leAlaSerIleValSerGlnHisValArgIleLeu{Ly}++ 217887 : TCGCGAGCATCGTCAGTCAACACGTTCGGATATTA{AA}gt................. : 217926 266 : n 1 >>>> {s}PheLeuSerLeuIleGluLysIleLeuGlnGlnValSerTyrMet : 280 {|}||||||:!!|||! !|||!:!! !|||||||||:!!|||!:! ++{s}PheLeuThrLeuThrGluArgThrLeuGlnGlnIleSerPheAla 217927 : ........ag{a}tttttgaCGCTCACAGAGAGAACCCTCCAGCAAATCTCTTTCGCT : 219196 281 : GluPheLeuGluCysThrValAsnValCysLeuLeuGlyTyrCysAlaIleIle >> : 299 |||||||||! !||||||:!!:!!:!!||||||:!!||||||! ! !|||:!: GluPheLeuGlyCysThrMetAspIleCysLeuValGlyTyrTyrIleIleVal++ 219197 : GAATTTCTAGGATGCACCATGGACATATGTCTCGTTGGATATTACATTATCGTGgt.. : 219255 300 : >> Target Intron 2 >>>> GluTrpGluSerAsnHisLeuThrGluValVal : 309 76 bp ||||||:!!|||||| !!:!!|||...!.!||| ++GluTrpLysSerAsnAspValThrSerAlaVal 219256 : .......................agGAATGGAAATCGAATGATGTAACGAGTGCAGTG : 219359 310 : ThrTyrValIleIleLeuIleThrIleIlePheAsnIlePheValPheCysTyrIleG : 329 ||||||:!!|||:!!||||||:!!:!: ||||||||||||:::||||||||||||| ThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleG 219360 : ACATACATCATTCTACTTATATCCCTcactttcaacattttcatattttgctaCATAG : 219419 330 : lyGluLeuLeuAlaAspGln >>>> Target Intron 3 >>>> SerArgLys : 338 |||||:!!:!!|||!!:||| 73 bp !! |||||| lyGluIleValAlaGluGln++ ++CysArgLys 219420 : GAGAGATCGTTGCTGAACAggt.........................agTGtaggaaa : 219519 339 : IleGlyGluValThrTyrMetIleGluTrpTyrArgLeuSerGlyLysLysLysLeuC : 358 |||||||||::::!!||||||||||||||||||||||||!!!|||||||||||||||! IleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysLysLeuT 219520 : attggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAAAGCTCT : 219579 359 : ysCysValLeuIleIleAlaMetSerAsnSerSerMetLysLeuThrAlaGlyAsnLe : 377 ! !!||||||! !|||||||||||||||||||||!!:||||||||||||||||||:! rpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMe 219580 : GGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGGAAATAT : 219636 378 : uIleGluLeuSerMetSerThrPheSerAsp >>>> Target Intron 4 >>>> : 388 !:!!|||||||||!!:|||||||||!!!||| 87 bp tValGluLeuSerIleSerThrPheThrAsp++ 219637 : GGTCGAATTGTCTATCAGCACTTTTACCGACgt......................... : 219671 389 : ValValLysThrSerPheAlaPheLeuAsnValLeuArgThrLeuThr : 403 ||||||||||||:!! !!.!!||||||||||||||||||||||||||| ++ValValLysThrAlaValThrPheLeuAsnValLeuArgThrLeuThr 219672 : agGTCGTTAAGACTGCAGTCACGTTTCTGAATGTACTACGAACATTGACT : 219803 vulgar: AmOr21 1 403 . KQ414889.1 217132 219803 + 1198 M 263 789 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 37 111 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 83 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217133 219803 1198 + . gene_id 1 ; sequence AmOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217133 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217133 217923 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219668 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219668 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219669 219670 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219669 219755 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 219754 219755 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219756 219803 . + . KQ414889.1 exonerate:protein2genome:local exon 219756 219803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217133 219803 1198 + . alignment_id 1 ; Query AmOr21 ; Align 217133 2 789 ; Align 219154 266 99 ; Align 219329 299 111 ; Align 219513 336 156 ; Align 219756 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1127 Query range: 6 -> 403 Target range: 212845 -> 215136 7 : AspGlnAspTyrLysSerAsnValAsnLeuSerIleLysTyrSerArgArgIleSerL : 26 ||| !|||:!!!.!...||||||||||||||| !!::!:!||| !!:!!! !| AspCysThrTyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuL 212846 : GACTGTACCTACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGA : 212903 27 : ysMetIleGlyLeuTrpProIlePheAspLysIleSerThrIleHisLysPheLeuAr : 45 || ! |||||||||||| ! ..! ! :!!||| !!|||.!.||| !:!! ysProThrGlyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIleAl 212904 : AACCAACGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGC : 212960 46 : gMetLeuTyrAsnThrIleCysTyrCysLeuLeuMetPheMetIleValLeuGlyTrp : 64 ! ||| !||||||:!!|||||| !!|||:!! !:!:!::!!:!!! ! !! ! aArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSer 212961 : TCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGT : 213017 65 : MetTyrIleAlaPheGluValLysAsnIleTyrAspGlyLeuLysPheValSerLeuM : 84 :!!|||:!: !.!!!!:|||:::||||||::: :!!:!!!!. !!.!!:!!. LeuTyrValPheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIleP 213018 : TTGTACGTGTTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTT : 213077 85 : etSerPheCysMetLeuSerIleThrLysTyrHisLeuIleAsnIleHisLysAspAs : 103 !.:!!||||||:!! !:!!:!: !|||||||||! !:!:! :!!||| ||||| heAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAs 213078 : TTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGA : 213134 104 : pValArgGluCysValLysArgIleGluTrpAspTrpLysAsnIleSerTyrSerGlu : 122 |:!!||| !||||||:!!!.!!!::!!!::|||||||||||||||!!!:!!..!||| pIleArgThrCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGlu 213135 : TATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAG : 213191 123 : AspArgGluIleMetLeuMetAsnAlaAsnPheGlyLysArgLeuIleIleValThrT : 142 |||!:!||||||||| !:!!||||||!:!||||||||||||:!!:!:! !:!! !. AspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysA 213192 : GACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTG : 213251 143 : hrThrValThrTyrSerGlyPheValPhePheTyrIleAlaIleProMetLysIleGl : 161 !! ! !!! !|||!!!||||||..!|||!:!!:!:!!!.!:!!|||!!:!.. ! laPhePheMetTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAs 213252 : CTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGA : 213308 162 : yLysIleProAlaProAspAlaAsnIleSerPheIleProThrMetPheProPhePro : 180 !|||!!: !||| !||| !|||:!:!!!|||! !! !! !:!! !!||| !! !! pLysMetValAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSer 213309 : TAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCG : 213365 181 : LysTyrIleAlaAspValArgTyrSerProIleAsnGluIleValPhePhePheGlnP : 200 !:!!:!|||!.!||||||||||||||||||:!:||||||||| !!|||!!..!!|||. ArgPheIleValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnI 213366 : AGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGA : 213425 201 : heMetCysGlyPheLeuValHisGlyValThrSerSerAlaCysSerLeuAlaAlaIl : 219 !!!!:..!||| ! |||:!!|||!.!:!!.!! ! !||||||||||||||||||:! leIleAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaVa 213426 : TTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGT : 213482 220 : ePheThrValHisAlaCysGlyGlnIleGlnValMetMetIleTrpLeuGluHisLeu : 238 :|||.!!||||||||||||||||||!!: :!!:!!|||! !||||||||||||||| lPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeu 213483 : GTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTG : 213539 239 : IleGluGlyArgLeuAspMetCysTyrSerValAspGlnArgIleAlaLysIleValS : 258 |||!!:|||||| !|||||| !! ! !:!||||||.!.||||||||| ||||||! IleAspGlyArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleValA 213540 : ATAGACGGTAGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGA : 213599 259 : erGlnHisValArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}Ph : 266 :!||||||||||||||||||{||} 840 bp {|}|| snGlnHisValArgIleLeu{Ly}++ ++{s}Ph 213600 : ACCAGCATGTGCGGATACTG{AA}gt.........................ag{A}TT : 214463 267 : eLeuSerLeuIleGluLysIleLeuGlnGlnValSerTyrMetGluPheLeuGluCys : 285 ||||..!|||:!:|||||| !|||!:!|||||||||!:! |||!!.|||! !||| eLeuGluLeuValGluLysAlaLeuArgGlnValSerPheAlaGluLeuLeuValCys 214464 : CTTAGAGCTCGTGGAGAAAGCACTTCGGCAAGTATCTTTCGCTGAATTATTAGTATGC : 214520 286 : ThrValAsnValCysLeuLeuGlyTyrCysAlaIleIle >>>> Target Intro : 299 |||||||||:!!||||||:!!||||||! ! !|||! 68 bp ThrValAsnLeuCysLeuValGlyTyrTyrIleIleThr++ 214521 : ACGGTGAATCTCTGTCTCGTTGGATATTACATAATAACGgt................. : 214564 300 : n 2 >>>> GluTrpGluSerAsnHisLeuThrGluValValThrTyrValIleIle : 314 ||||||.!.||||||:!!|||||| ..!||||||||||||:!::!: ++GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValValLeu 214565 : ........aggAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGGTGTTG : 214675 315 : LeuIleThrIleIlePheAsnIlePheValPheCysTyrIleGlyGluLeuLeuAlaA : 334 ! !|||:!!::: ||||||||||||:::|||||||||||||||||||||:!!:!!! TyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValSerG 214676 : TATATCTCTCtcactttcaatattttcatattttgttaCATAGGCGAGCTTGTGTCTG : 214735 335 : spGln >>>> Target Intron 3 >>>> SerArgLysIleGlyGluValThr : 343 !:||| 123 bp !!!!:!|||:!!|||||||||:!! luGln++ ++CysLysLysValGlyGluValSer 214736 : AACAGgt.........................agTGCAAAAAGGTCGGAGAAGTATCG : 214885 344 : TyrMetIleGluTrpTyrArgLeuSerGlyLysLysLysLeuCysCysValLeuIleI : 363 |||||||||||||||||||||||| !!|||!!.|||||||||||||||:!!||||||! TyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCysCysIleLeuIleM 214886 : TACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCA : 214945 364 : leAlaMetSerAsnSerSerMetLysLeuThrAlaGlyAsnLeuIleGluLeuSerMe : 382 !:||||||||||||||||||:!:|||!!!||||||||||||:!!:!!|||||||||!! etAlaMetSerAsnSerSerValLysPheThrAlaGlyAsnMetValGluLeuSerIl 214946 : TGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTAT : 215002 383 : tSerThrPheSerAsp >>>> Target Intron 4 >>>> ValValLysThrS : 392 :||||||||||||..! 69 bp ||||||::!|||| eSerThrPheSerSer++ ++ValValArgThrS 215003 : CAGCACTTTCAGCAGTgt.........................agGTTGTTCGAACAT : 215101 393 : erPheAlaPheLeuAsnValLeuArgThrLeuThr : 403 || !!||||||||||||!.!|||||||||...::: erValAlaPheLeuAsnAlaLeuArgThrPheSer 215102 : CGGTTGCCTTCTTAAACGCGTTACgaacattttca : 215136 vulgar: AmOr21 6 403 . KQ414889.1 212845 215136 + 1127 M 258 774 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 M 33 99 5 0 2 I 0 64 3 0 2 M 37 111 5 0 2 I 0 119 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212846 215136 1127 + . gene_id 2 ; sequence AmOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212846 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 212846 213621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215019 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215019 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 215020 215021 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 215020 215088 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 215087 215088 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 215089 215136 . + . KQ414889.1 exonerate:protein2genome:local exon 215089 215136 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212846 215136 1127 + . alignment_id 2 ; Query AmOr21 ; Align 212846 7 774 ; Align 214463 266 99 ; Align 214630 299 111 ; Align 214864 336 156 ; Align 215089 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1127 Query range: 0 -> 403 Target range: 226885 -> 230518 1 : MetSerSerValLysIleAspGlnAspTyrLysSerAsnValAsnLeuSerIleLysT : 20 :!::!!|||:!! !! !!!:.!.||||||:!!..! !!:!!||||||||||||:!!! LeuAlaSerLeuAlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnL 226886 : CTCGCGTCTCTCGCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGT : 226943 21 : yrSerArgArgIleSerLysMetIleGlyLeuTrpProIlePheAspLysIleSerTh : 39 !:!||| !!:!:! !||| :!!|||:!!|||||| ! !|||! !||| euAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgLysSerSerAr 226944 : TGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCG : 227000 40 : rIleHisLysPheLeuArgMetLeuTyrAsnThrIleCysTyrCysLeuLeuMetPhe : 58 !||| !:!! !!!! ! !||| ..! !:!!||||||...|||:!!! ||| gIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPhe 227001 : AATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTC : 227057 59 : MetIleValLeuGlyTrpMetTyrIleAlaPheGluValLysAsnIleTyrAspGlyL : 78 !:!:|||! !.!! ! :!!|||:!:!.!.!.|||||||||..! !|||:!! !| GluLeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrL 227058 : GAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGC : 227117 79 : euLysPheValSerLeuMetSerPheCysMetLeuSerIleThrLysTyrHisLeuIl : 97 |||||.!.:!!.!!! !|||||||||! ! !:!!|||:!! !|||||| !:!!:! euLysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLe 227118 : TGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTT : 227174 98 : eAsnIleHisLysAspAspValArgGluCysValLysArgIleGluTrpAspTrpLys : 116 :!...!!|||:!!||||||:!!! !|||||||||:!!||||||:!!|||||||||||| uThrPheHisGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLys 227175 : GACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAG : 227231 117 : AsnIleSerTyrSerGluAspArgGluIleMetLeuMetAsnAlaAsnPheGlyLysA : 136 ||||||!!!||| !|||||||||.!.:!:|||:!!! ! !!||| !!!:!|||!:!! AsnIleArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgL 227232 : AATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAA : 227291 137 : rgLeuIleIleValThrThrThrValThrTyrSerGlyPheValPhePheTyrIleAl : 155 :!||||||! !:!! !||| ! !!..!!:!|||...||||||||||||||||||!. ysLeuIleThrIleCysThrPhePheValPheSerSerPheValPhePheTyrIleVa 227292 : AATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGT : 227348 156 : aIleProMetLysIleGlyLysIleProAlaProAspAlaAsnIleSerPheIlePro : 174 !:!!|||!!:!!. !|||!..:!! !!.!! !|||!.!||| !|||!:!|||! ! lValProIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGln 227349 : CGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAG : 227405 175 : ThrMetPheProPheProLysTyrIleAlaAspValArgTyrSerProIleAsnGluI : 194 ! ! !||||||||||||||| !||||||||||||||||||||||||.!!||||||| MetProPheProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGluI 227406 : ATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGA : 227465 195 : leValPhePhePheGlnPheMetCysGlyPheLeuValHisGlyValThrSerSerAl : 213 || !!|||! ! ||||||:!: |||.!!:!!:!!|||||||||||||||:!!|| lePhePheSerValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAl 227466 : TCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGC : 227522 214 : aCysSerLeuAlaAlaIlePheThrValHisAlaCysGlyGlnIleGlnValMetMet : 232 |||||||:!!||||||:!:.!!.!!||||||||||||||||||!!::!!|||:!!:!! aCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuVal 227523 : TTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTG : 227579 233 : IleTrpLeuGluHisLeuIleGluGlyArgLeuAspMetCysTyrSerValAspGlnA : 252 !||||||! !|||||||||!!:|||||| !|||||| !! ! !!!:!!|||.!.| SerTrpLeuGlyHisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAspAspA 227580 : TCCTGGCTGGGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGATGATA : 227639 253 : rgIleAlaLysIleValSerGlnHisValArgIleLeu{Ly} >>>> Target In : 265 ||||||||!..||||||!!!!!.|||||||||||||||{!!} 396 rgIleAlaSerIleValThrHisHisValArgIleLeu{As}++ 227640 : GAATCGCTAGCATCGTCACTCACCACGTTCGAATATTG{AA}gt.............. : 227682 266 : tron 1 >>>> {s}PheLeuSerLeuIleGluLysIleLeuGlnGlnValSerTyr : 279 bp {.}||||||:!!||||||||||||! !:!!||||||:!!:!!!:! ++{n}PheLeuAlaLeuIleGluLysThrMetGlnGlnIleAlaPhe 227683 : ...........ag{C}TTTCTGGCCCTCATAGAGAAAACCATGCAGCAAATAGCTTTC : 228116 280 : MetGluPheLeuGluCysThrValAsnValCysLeuLeuGlyTyrCysAlaIleIle : 299 :!:|||||||||! !||||||:!!! !:!!||||||:!!! !|||! ! !|||! ValGluPheLeuGlyCysThrIleIleLeuCysLeuIleGluTyrTyrIleIleThr+ 228117 : GTAGAATTTTTAGGGTGTACAATAATTCTGTGCCTCATCGAGTATTACATCATAACGg : 228176 300 : >>>> Target Intron 2 >>>> GluTrpGluSerAsnHisLeuThrGluVal : 308 72 bp ||||||.!. !!!!..!.|||||| !.! + ++GluTrpAsnProLysGluLeuThrPheAla 228177 : t.........................agGAATGGAATCCGAAAGAGTTAACATTTGCT : 228275 309 : ValThrTyrValIleIleLeuIleThrIleIlePheAsnIlePheValPheCysTyrI : 328 ||||||||| ! :!!|||:!!:!!.!!! ||||||||||||:::|||||||||| ValThrTyrSerAlaLeuLeuLeuSerPheThrPheAsnIlePheIlePheCysTyrI 228276 : GTAACTTACTCAGCGTTACTTTTATCCTTTAccttcaatattttcatattttgttaTA : 228335 329 : leGlyGluLeuLeuAlaAspGln >>>> Target Intron 3 >>>> SerArg : 337 ||||||||:!!:!!|||!!:!!. 1889 bp !!!||| leGlyGluIleValAlaGluHis++ ++CysArg 228336 : TAGGAGAAATTGTTGCCGAACACgt.........................agTGCAGA : 230251 338 : LysIleGlyGluValThrTyrMetIleGluTrpTyrArgLeuSerGlyLysLysLysL : 357 |||:!!|||||| !:!!||||||||||||||||||||||||!!!|||!!.||||||| LysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyAsnLysLysL 230252 : AAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAAACAAGAAGC : 230311 358 : euCysCysValLeuIleIleAlaMetSerAsnSerSerMetLysLeuThrAlaGlyAs : 376 ||||||||:!!|||||||||||||||||||||!!!|||! !|||!!!||||||||||| euCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheThrAlaGlyAs 230312 : TCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTACAGCAGGAAA : 230368 377 : nLeuIleGluLeuSerMetSerThrPheSerAsp >>>> Target Intron 4 > : 388 |:!!:!!|||||||||:!:!:!|||||||||||| 67 bp nMetValGluLeuSerValAsnThrPheSerAsp++ 230369 : CATGGTTGAATTATCCGTAAACACTTTCAGCGACgt...................... : 230406 389 : >>> ValValLysThrSerPheAlaPheLeuAsnValLeuArgThrLeuThr : 403 |||||||||||||||.!.!.!|||||||||:!!||||||||||||||| ++ValValLysThrSerMetGlyPheLeuAsnMetLeuArgThrLeuThr 230407 : ...agGTCGTTAAAACGTCCATGGGTTTCTTAAACATGCTACGAACACTGACG : 230518 vulgar: AmOr21 0 403 . KQ414889.1 226885 230518 + 1127 M 264 792 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226886 230518 1127 + . gene_id 3 ; sequence AmOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226886 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226886 227679 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230403 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230403 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 230404 230405 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 230404 230470 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 230469 230470 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230471 230518 . + . KQ414889.1 exonerate:protein2genome:local exon 230471 230518 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226886 230518 1127 + . alignment_id 3 ; Query AmOr21 ; Align 226886 1 792 ; Align 228077 266 99 ; Align 228248 299 111 ; Align 230248 336 156 ; Align 230471 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 857 Query range: 0 -> 270 Target range: 221333 -> 222143 1 : MetSerSerValLysIleAspGlnAspTyrLysSerAsnValAsnLeuSerIleLysT : 20 :!!||||||..!::::!!!!: ! |||||||||!!!||||||!!.||||||:!::!!! LeuSerSerThrArgValGluTyrAspTyrLysThrAsnValLysLeuSerValGlnL 221334 : CTGTCTTCGACTCGTGTTGAATACGATTACAAGACGAACGTGAAATTGAGCGTGCAAT : 221391 21 : yrSerArgArgIleSerLysMetIleGlyLeuTrpProIlePheAspLysIleSerTh : 39 |||||| !!|||! !||| !||||||:!!||||||! !! ! !!!.|||||||| euSerArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaAsnIleSerTh 221392 : TGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCAC : 221448 40 : rIleHisLysPheLeuArgMetLeuTyrAsnThrIleCysTyrCysLeuLeuMetPhe : 58 |:!!.!.!:!!:!||| ! !||| |||..!:!!|||||| !!|||:!!! !||| rValGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLeuIleThrPhe 221449 : GGTAGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTC : 221505 59 : MetIleValLeuGlyTrpMetTyrIleAlaPheGluValLysAsnIleTyrAspGlyL : 78 :!::!:|||! ! !! ! :!:|||:!: !.!!||||||:!!:!!:!!|||:!! !!: LeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspValTyrAsnArgI 221506 : CTCTTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAA : 221565 79 : euLysPheValSerLeuMetSerPheCysMetLeuSerIleThrLysTyrHisLeuIl : 97 !!|||!!.:!!.!!! !:!!|||||||||:!!:!!:!!.!! !||||||||||||:! leLysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLe 221566 : TCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTT : 221622 98 : eAsnIleHisLysAspAspValArgGluCysValLysArgIleGluTrpAspTrpLys : 116 :! :!!:!!:!!:!!|||:!!|||||||||:!!:!!||||||||||||||||||||| uIleLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTrpAspTrpLys 221623 : GATACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAG : 221679 117 : AsnIleSerTyrSerGluAspArgGluIleMetLeuMetAsnAlaAsnPheGlyLysA : 136 ||||||!!!||||||:!!|||!:!!!:||||||:!! !||||||! !||||||!:!| AsnIleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIlePheGlyArgA 221680 : AATATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGC : 221739 137 : rgLeuIleIleValThrThrThrValThrTyrSerGlyPheValPhePheTyrIleAl : 155 ||||||||!!::!! !||| ! !!! !||||||||||||||||||:::|||||||| rgLeuIleMetIleCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAl 221740 : GATTGATCATGATCTGCACATTTTTCATGTACAGTggtttcgttttttattacatAGC : 221796 156 : aIleProMetLysIleGlyLysIleProAlaProAspAlaAsnIleSerPheIlePro : 174 |||||||.!.!..:!:|||||||||||||||! !|||...|||::::::||||||||| aIleProPheSerValGlyLysIleProAlaGlnAspValAsnValThrPheIlePro 221797 : CATACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCA : 221853 175 : ThrMetPheProPheProLysTyrIleAlaAspValArgTyrSerProIleAsnGluI : 194 ! !:!!||||||||| !!!:!!:!|||!.!|||..!||||||||||||:!!||||||| MetValPheProPheSerArgPheIleValAspThrArgTyrSerProValAsnGluI 221854 : ATGGTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGA : 221913 195 : leValPhePhePheGlnPheMetCysGlyPheLeuValHisGlyValThrSerSerAl : 213 ||:!!|||! .!!|||.!!|||...||| !|||:!!|||.!!:!!||||||:!!|| leLeuPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAl 221914 : TTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGC : 221970 214 : aCysSerLeuAlaAlaIlePheThrValHisAlaCysGlyGlnIleGlnValMetMet : 232 ||||||||||!.!|||!!:|||.!!||||||||||||||||||!!:||||||:!!||| aCysSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMet 221971 : TTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATG : 222027 233 : IleTrpLeuGluHisLeuIleGluGlyArgLeuAspMetCysTyrSerValAspGlnA : 252 ! !||||||:!!|||||||||.!.|||||| !||||||||| !!!:!||||||::!| SerTrpLeuLysHisLeuIleAsnGlyArgAlaAspMetCysAsnAsnValAspArgA 222028 : AGCTGGCTGAAACATTTGATCAACGGCCGGGCGGATATGTGTAACAACGTGGATAGGA : 222087 253 : rgIleAlaLysIleValSerGlnHisValArgIleLeuLysPheLeuSerLeuIle : 270 |||||||||||||||||!:!||||||||||||||||||:!!!:!:!! !!! !||| rgIleAlaLysIleValAsnGlnHisValArgIleLeuGlnTyrValArgCysIle 222088 : GAATAGCGAAGATTGTGAATCAACACGTTCGAATATTGCAGTATGTACGTTGTATC : 222143 vulgar: AmOr21 0 270 . KQ414889.1 221333 222143 + 857 M 270 810 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221334 222143 857 + . gene_id 4 ; sequence AmOr21 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221334 222143 . + . KQ414889.1 exonerate:protein2genome:local exon 221334 222143 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221334 222143 857 + . alignment_id 4 ; Query AmOr21 ; Align 221334 1 810 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 602 Query range: 6 -> 403 Target range: 278549 -> 280551 7 : AspGlnAspTyrLysSerAsnValAsnLeuSerIleLysTyrSerArgArgIleSerL : 26 |||..! !::!!.!!!:!! !! ! !|||:!!:!! !:!||| !!.!! !| AspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuL 278550 : GATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCA : 278607 27 : ysMetIleGlyLeuTrpProIlePheAspLysIleSerThrIleHisLysPheLeuAr : 45 || !||||||:!!||||||:!! ! ! :!:!!!|||:!:.!.|||.!! ! ysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSe 278608 : AACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTC : 278664 46 : gMetLeuTyrAsnThrIle<->CysTyrCysLeuLeuMetPheMetIleValLeuGly : 63 !:!!:!! ! !||| |||!:! :!! !.!..!!:!!:!! !! !!.! rValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAla 278665 : CGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCT : 278721 64 : TrpMetTyrIleAlaPheGluValLysAsnIleTyrAspGlyLeuLysPheValSerL : 83 ! :!: ! !:!!..! :!!:!! !! !:!!|||.!.:!!.!!! LeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyP 278722 : CTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTC : 278781 84 : euMetSerPheCysMetLeuSerIleThrLysTyrHisLeuIleAsnIleHisLysAs : 102 !:!:|||||||||! !:!!:!!! ! !||||||:!!:!!:!!! !.! ! roLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGl 278782 : CTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGG : 278838 103 : pAspValArgGluCysValLysArgIleGluTrpAspTrpLys<->AsnIleSerTyr : 120 ! ! :!! !!:!!||||||!!. !|||... !||||||... !..:!!|||||| yLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyr 278839 : CAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTAT : 278895 121 : <-><->SerGluAspArgGluIleMetLeuMetAsnAlaAsnPheGlyLysArgLeuI : 138 ...|||:::|||||||||||| ! !:!|||!...!!|||::! !||| ArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuA 278896 : CGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGG : 278955 139 : leIleValThrThrThrValThrTyrSerGlyPheValPhePheTyrIleAlaIlePr : 157 ||| !!!:!.!! ! !!! !||||||||| ||||||!:! ! !!.!!!:|| laIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetPr 278956 : CGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCC : 279012 158 : oMetLysIleGlyLysIleProAlaProAspAlaAsnIleSerPheIleProThrMet : 176 |:!! !! !:::! ! ! !||| ||| !!!! ! ! ! !! ! ! oLeuPheAlaValArgThrGluIleIleAsp---AsnGluThrValArgSerGlnAla 279013 : GTTGTTCGCAGTACGCACGGAGATCATCGAC---AATGAAACGGTGAGATCTCAAGCG : 279066 177 : PheProPheProLysTyrIleAlaAspValArgTyrSerProIleAsnGluIleValP : 196 ||||||.!! !::: !:!! !||| !||| !|||||| !||||||||| PheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValG 279067 : TTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGC : 279126 197 : hePhePheGlnPheMetCysGlyPheLeuValHisGlyValThrSerSerAlaCysSe : 215 |||.!.|||! !:!!..!!.!|||:!!:!!:!!..!|||||| !.!!|||||||| lnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSe 279127 : AATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAG : 279183 216 : rLeuAlaAlaIlePheThrValHisAlaCysGlyGlnIleGlnValMetMetIleTrp : 234 |||| !|||:!:|||..!:!!|||!.!|||||||||.!!::!:!!:!::!!! ! ! rLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLys 279184 : CTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAG : 279240 235 : LeuGluHisLeuIleGluGly<-><->ArgLeuAspMetCysTyrSerValAspGlnA : 252 |||!!: ! ||||||!!:||| !! ! ! ! ! !!!! !!!:|||| LeuAspLysLeuIleAspGlyValLysGlyArgLysSerLeuSerThrHisGluGlnA 279241 : CTGGATAAGCTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAAC : 279300 253 : rgIleAlaLysIleValSerGlnHisValArgIleLeu{Ly} >>>> Target In : 265 ||:!:!.! ! |||:!!..!!!.|||:!!!:!||||||{ } 571 rgLeuGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 279301 : GACTGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt.............. : 279343 266 : tron 1 >>>> {s}PheLeuSerLeuIleGluLysIleLeuGlnGlnValSerTyr : 279 bp { }|||:!!|||! !|||||| !:!!|||.!.:!!:!!!!!!:! ++{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPhe 279344 : ...........ag{T}TTTATATCGCAAATCGAGGGGCTCCTGAACGAAATATGTTTC : 279952 280 : MetGluPheLeuGluCysThrValAsnValCysLeuLeuGlyTyrCysAlaIleIle : 299 :!:||| ! :!!! ||||||:!!|||:!!|||!!!||| !|||! ! !:!!! ValGluValIleGlyCysThrLeuAsnIleCysPheLeuThrTyrTyrLeuLeuThr+ 279953 : GTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGACATATTATTTACTCACGg : 280012 300 : >>>> Target Intron 2 >>>> GluTrpGluSerAsnHisLeuThrGluVal : 308 80 bp |||||||||..!||| !! !! !! !..! + ++GluTrpGluGlnAsnAspAlaIleGlyThr 280013 : t.........................agGAATGGGAGCAAAATGACGCTATAGGAACG : 280119 309 : ValThrTyrValIleIleLeuIleThrIleIlePheAsnIlePheValPheCysTyrI : 328 !!||||||:!!!!:.!!||||||:!!:!!! ||||||:!!|||:!!.!!||||||| PheThrTyrLeuMetPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrI 280120 : TTCACGTATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACA : 280179 329 : leGlyGluLeuLeuAlaAspGln >>>> Target Intron 3 >>>> SerArg : 337 ||||||||:!!|||:!!!!:||| 74 bp !!! ! leGlyGluIleLeuSerGluGln++ ++CysLeu 280180 : TCGGTGAAATTCTCTCCGAACaggt.........................agTGCTTA : 280280 338 : LysIleGlyGluValThrTyrMetIleGluTrpTyrArgLeuSerGlyLysLysLysL : 357 |||:!!|||! ! !||||||||||||!!:|||||||||||| !!||||||||| !! LysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaG 280281 : AAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCAC : 280340 358 : euCysCysValLeuIleIleAlaMetSerAsnSerSerMetLysLeuThrAlaGlyAs : 376 ! !!! :!!||||||.!!|||:!!||||||||||||!!:|||||||||||||||!! lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 280341 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 280397 377 : nLeuIleGluLeuSerMetSerThrPheSerAsp >>>> Target Intron 4 > : 388 .:!!|||!!:||||||:!:|||!:!|||!!!..! 71 bp sIleIleAspLeuSerLeuSerSerPheCysSer++ 280398 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt...................... : 280435 389 : >>> ValValLysThrSerPheAlaPheLeuAsnValLeuArgThrLeuThr : 403 |||:!!||||||:!!||||||!:!|||!:!:!!||||||||||||||| ++ValLeuLysThrAlaPheAlaTyrLeuSerLeuLeuArgThrLeuThr 280436 : ...agGTGTTAAAAACGGCATTCGCATATCTGAGCTTATTACGTACGCTTACC : 280551 vulgar: AmOr21 6 403 . KQ414889.1 278549 280551 + 602 M 45 135 G 0 3 M 65 195 G 0 3 M 4 12 G 0 6 M 47 141 G 1 0 M 73 219 G 0 6 M 23 69 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278550 280551 602 + . gene_id 5 ; sequence AmOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278550 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278550 279340 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280551 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278550 280551 602 + . alignment_id 5 ; Query AmOr21 ; Align 278550 7 135 ; Align 278688 52 195 ; Align 278886 117 12 ; Align 278904 121 141 ; Align 279045 169 219 ; Align 279270 242 69 ; Align 279913 266 99 ; Align 280092 299 111 ; Align 280277 336 156 ; Align 280504 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 600 Query range: 0 -> 265 Target range: 208167 -> 208962 1 : MetSerSerValLysIleAspGlnAspTyrLysSerAsnValAsnLeuSerIleLysT : 20 |||!!!..!:!! :!!:!!::!:!!||||||!:!:!!:!!!:!!!!!:!:!!::: MetArgGlnIlePheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgL 208168 : ATGAGACAAATATTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTC : 208225 21 : yrSerArgArgIleSerLysMetIleGlyLeuTrpProIlePheAspLysIleSerTh : 39 !:! ! !!! ! !|||!!:||||||! !||||||! !! ! ! !||| euAsnValTrpThrLeuLysIleIleGlySerTrpProArgSerIleAspArgSerTr 208226 : TGAACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTG : 208282 40 : rIleHisLysPheLeuArgMetLeuTyrAsnThrIleCysTyrCysLeuLeuMetPhe : 58 !:!!.!.!!. !! !!.!!!:|||! |||..!:!! !!:!!||||||||| ||| pLeuGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPhe 208283 : GTTAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTC : 208339 59 : MetIleValLeuGlyTrpMetTyrIleAlaPheGluValLysAsnIleTyrAspGlyL : 78 !!::!::!!! ! ! ! |||!:! !.!!! !|||:!!:!!.!!|||||| !| IleValIleProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnL 208340 : ATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAAT : 208399 79 : euLysPheValSerLeuMetSerPheCysMetLeuSerIleThrLysTyrHisLeuIl : 97 |||||.!! !||| !:!!||||||! !|||:!!:!!.!!||||||||| :!!!! euLysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMe 208400 : TAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCAT : 208456 98 : eAsnIleHisLysAspAspValArgGluCysValLysArgIleGluTrpAspTrpLys : 116 :!.!:!!!.!:!!! !|||:!!|||:!!||||||:!! !:!!||| ||||||!:! tThrValArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArg 208457 : GACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGA : 208513 117 : AsnIleSerTyrSerGluAspArgGluIleMetLeuMetAsnAlaAsnPheGlyLysA : 136 |||:!:..!:!!..!|||||||||:!!||||||||| ||||||!:!|||!.!!:!! AsnValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgL 208514 : AACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGA : 208573 137 : rgLeuIleIleValThrThrThrValThrTyrSerGlyPheValPhePheTyrIleAl : 155 :!||||||:!::!! ! !.!! !!! !|||.!!||| :::|||:::|||||||| ysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAl 208574 : AACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGC : 208630 156 : aIleProMetLysIleGlyLysIleProAlaProAspAlaAsnIleSerPheIlePro : 174 |:!:|||:!:! !! !|||:!! !! ! !! !!.!|||:!:!!!!:!! ! ! aLeuProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArg 208631 : TTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGG : 208687 175 : ThrMetPheProPheProLysTyrIleAlaAspValArgTyrSerProIleAsnGluI : 194 !:!:!:!||| !!||||||!:!||| !||||||||||||||||||:!:||||||| LeuValTyrProValProLysPheIleLeuAspValArgTyrSerProValAsnGluI 208688 : CTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGA : 208747 195 : leValPhePhePheGlnPheMetCysGlyPheLeuValHisGlyValThrSerSerAl : 213 || !!!:! ! |||!!.:!!! ||||||:!!!.!|||..!:!!||| !.!!|| lePheTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAl 208748 : TTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGC : 208804 214 : aCysSerLeuAlaAlaIlePheThrValHisAlaCysGlyGlnIleGlnValMetMet : 232 ||||.!!|||||||||:!:.!!.!!:!!|||||||||||||||:!:|||:!!:!!||| aCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMet 208805 : TTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATG : 208861 233 : IleTrpLeuGluHisLeuIleGluGlyArgLeuAspMetCysTyrSerValAspGlnA : 252 !|||:!!||| ! |||:!!!!:|||||| !||| ! ! !:!:!!||||||| SerTrpMetGluLysLeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnA 208862 : TCCTGGATGGAGAAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGA : 208921 253 : rgIleAlaLysIleValSerGlnHisValArgIleLeuLys : 265 ||:!:|||!!.||||||..!||||||||||||:!::!!||| rgLeuAlaAsnIleValGluGlnHisValArgValIleLys 208922 : GGTTGGCTAATATCGTGGAGCAGCATGTTCGAGTGATCAAG : 208962 vulgar: AmOr21 0 265 . KQ414889.1 208167 208962 + 600 M 265 795 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208168 208962 600 + . gene_id 6 ; sequence AmOr21 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208168 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208168 208962 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208168 208962 600 + . alignment_id 6 ; Query AmOr21 ; Align 208168 1 795 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 595 Query range: 6 -> 403 Target range: 284496 -> 287338 7 : AspGlnAspTyrLysSerAsnValAsnLeuSerIleLysTyrSerArgArgIleSerL : 26 |||..! !:: ! !!!:!! !! ! !|||:!!:!! !:!||| !!.!! !| AspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuL 284497 : GATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCA : 284554 27 : ysMetIleGlyLeuTrpProIlePheAspLysIleSerThrIleHisLysPheLeuAr : 45 || !||||||:!!||||||:!! ! ! :!:!!!|||:!:.!.|||.!! ! ysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSe 284555 : AACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTC : 284611 46 : gMetLeuTyrAsnThrIle<->CysTyrCysLeuLeuMetPheMetIleValLeuGly : 63 !:!!:!! ! !||| |||!:! :!! !.!..!!:!!:!! !! !!.! rValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAla 284612 : CGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCT : 284668 64 : TrpMetTyrIleAlaPheGluValLysAsnIleTyrAspGlyLeuLysPheValSerL : 83 ! :!: ! !:!!..! :!!:!! !! !:!!|||.!.:!!.!!! LeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyP 284669 : CTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTC : 284728 84 : euMetSerPheCysMetLeuSerIleThrLysTyrHisLeuIleAsnIleHisLysAs : 102 !:!!||||||||||||:!!:!! ! !||||||:!!:!!:!!! ! !.! ! roLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGl 284729 : CTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGG : 284785 103 : pAspValArgGluCysValLysArgIleGluTrpAsp{Tr} >>>> Target Int : 115 ! ! :!! !!:!!||||||||| !|||... !|||{||} 1012 b yLysIleGlyGlnCysValLysAspIleArgAlaAsp{Tr}++ 284786 : CAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGAC{TG}gt............... : 284828 116 : ron 1 >>>> {p}LysAsnIleSerTyrSerGluAspArgGluIleMetLeuMetA : 130 p {|} ::: !||| ...|||:::|||||||||||| ! ! +-{p}LeuSerHisSerGlnGluGluGluArgGluIleMetArgAspS 284829 : ..........ac{G}CTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACA : 285881 131 : snAlaAsnPheGlyLysArgLeuIleIleValThrThrThrValThrTyrSerGlyPh : 149 :!|||!...!!|||::! !||| ||| !! !.!! ! !!! !||||||||| erAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGl 285882 : GCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGG : 285938 150 : eValPhePheTyrIleAlaIleProMetLysIleGlyLysIleProAlaProAspAla : 168 !!|||!:! !! !.!!!:|||:!! ! !! !:::! ! ! !||| yPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIleAsp--- 285939 : ATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGAC--- : 285995 169 : AsnIleSerPheIleProThrMetPheProPheProLysTyrIleAlaAspValArgT : 188 ||| !!! ! ! ! !! ! !||||||.!! !::: !:!! !||| !||| AsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgT 285996 : AACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTA : 286052 189 : yrSerProIleAsnGluIleValPhePhePheGlnPheMetCysGlyPheLeuValHi : 207 !|||||| !||||||||| |||.!.|||! !:!!..!!.!|||:!!:!!:! hrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTy 286053 : CCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATA : 286109 208 : sGlyValThrSerSerAlaCysSerLeuAlaAlaIlePheThrValHisAlaCysGly : 226 !..!|||||| !.!!||||||||||||||||||:!:|||..!:!!|||!.!|||||| rSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGly 286110 : CTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGA : 286166 227 : GlnIleGlnValMetMetIleTrpLeuGluHisLeuIleGluGlyArgLeuAspMet< : 246 |||.!!::!:!!:!::!!! ! !|||!!: ! |||:!!!!:||| ! !! ! ! GlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLysGlyArgL 286167 : CAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGAGGA : 286226 247 : -><->CysTyrSerValAspGlnArgIleAlaLysIleValSerGlnHisValArgIl : 263 ! !!!! !!!:||||||:!:!.! ! |||:!!..!!!.|||:!!!:!|| ysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLysIl 286227 : AGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGAT : 286283 264 : eLeu{Ly} >>>> Target Intron 2 >>>> {s}PheLeuSerLeuIleGlu : 271 ||||{ } 408 bp { }|||:!!|||! !|||||| eLeu{Gl}++ ++{y}PheIleSerGlnIleGlu 286284 : ACTG{GG}gt.........................ag{T}TTTATATCGCAAATCGAG : 286715 272 : LysIleLeuGlnGlnValSerTyrMetGluPheLeuGluCysThrValAsnValCysL : 291 !:!!|||.!.:!!:!!!!!!:!:!:||| ! :!!! ||||||:!!|||:!!|||! GlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsnIleCysP 286716 : GGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCT : 286775 292 : euLeuGlyTyrCysAlaIleIle >>>> Target Intron 3 >>>> GluTrp : 300 !!|||||||||! ! !:!:! 80 bp |||||| heLeuGlyTyrTyrLeuLeuThr++ ++GluTrp 286776 : TTTTGGGATATTATTTACTGACGgt.........................agGAATGG : 286882 301 : GluSerAsnHisLeuThrGluValValThrTyrValIleIleLeuIleThrIleIleP : 320 |||..!!:!.!. !! !! !..!:!!|||||| !! :!:|||:!!:!!.!!! | GluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerPheThrP 286883 : GAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCACGT : 286942 321 : heAsnIlePheValPheCysTyrIleGlyGluLeuLeuAlaAspGln >>>> Targ : 336 |||||:!!|||:!!.!!|||||||||||||||:!!|||:!!!!:||| heAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286943 : TCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt......... : 286992 337 : et Intron 4 >>>> SerArgLysIleGlyGluValThrTyrMetIleGluTrpT : 349 74 bp !! !|||:!!||| ! !||||||||||||!!:|||| ++CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpT 286993 : ................agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGT : 287103 350 : yrArgLeuSerGlyLysLysLysLeuCysCysValLeuIleIleAlaMetSerAsnSe : 368 |||||||| !!||||||! ! ! ! !!! :!!||||||.!!|||:!!|||||||| yrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSe 287104 : ATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTC : 287160 369 : rSerMetLysLeuThrAlaGlyAsnLeuIleGluLeuSerMetSerThrPheSerAsp : 387 ||||!!:|||||||||||||||!!.:!!|||!!:||||||:!:|||!:!|||!!!..! rSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSer 287161 : TTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGC : 287217 388 : >>>> Target Intron 5 >>>> ValValLysThrSerPheAlaPheLeuAs : 397 71 bp |||:!!|||:!!:!!||||||!:!|||!: ++ ++ValLeuLysSerAlaPheAlaTyrLeuSe 287218 : gt.........................agGTGTTGAAATCGGCATTCGCATATCTGAG : 287318 398 : nValLeuArgThrLeuThr : 403 !:!!||||||||||||||| rLeuLeuArgThrLeuThr 287319 : CTTATTACGTACGCTAACC : 287338 vulgar: AmOr21 6 403 . KQ414889.1 284496 287338 + 595 M 45 135 G 0 3 M 63 189 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 52 156 G 1 0 M 77 231 G 0 6 M 19 57 S 0 2 5 0 2 I 0 404 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284497 287338 595 + . gene_id 7 ; sequence AmOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284497 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284497 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286698 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 4 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 3 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287220 287221 . + . intron_id 5 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 287220 287290 . + . intron_id 5 KQ414889.1 exonerate:protein2genome:local splice3 287289 287290 . + . intron_id 4 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 287291 287338 . + . KQ414889.1 exonerate:protein2genome:local exon 287291 287338 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284497 287338 595 + . alignment_id 7 ; Query AmOr21 ; Align 284497 7 135 ; Align 284635 52 189 ; Align 285839 116 156 ; Align 285995 169 231 ; Align 286232 246 57 ; Align 286700 266 99 ; Align 286879 299 111 ; Align 287064 336 156 ; Align 287291 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 543 Query range: 7 -> 388 Target range: 262825 -> 264885 8 : GlnAspTyrLysSerAsnValAsnLeuSerIleLysTyrSerArgArgIleSerLysM : 27 :!!..!!:! ||| ! !:!!! !|||:!::!! !:!||| !!:!: !||| GluSerPheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysP 262826 : GAAAGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAAC : 262883 28 : etIleGlyLeuTrpProIlePheAspLysIleSerThrIleHisLysPheLeuArgMe : 46 !|||||| !||||||:!:! !! !..!||||||! !!!:.!.::!.!!:!! !!.! roIleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPh 262884 : CGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTT : 262940 47 : tLeuTyrAsnThrIleCysTyrCysLeuLeuMetPheMetIleValLeuGlyTrpMet : 65 .|||! ! !..!:!!||||||||||||:!!:!:! !! :!!:!!! !..! :!: eLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeu 262941 : TCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTT : 262997 66 : TyrIleAlaPheGluValLysAsnIleTyrAspGlyLeuLysPheValSerLeuMetS : 85 :!!|||!.!.!.|||!.!:!!|||.!!:!! !|||:!! !!:!!.!!! !:!:. HisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuG 262998 : CATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCG : 263057 86 : erPheCysMetLeuSerIleThrLysTyrHisLeuIleAsnIleHisLysAspAspVa : 104 !! !! .!.:!!.!!!!:! !!!.||| !! !:!: :!!|||!.. ! |||:! lyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIl 263058 : GTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATAT : 263114 105 : lArgGluCysValLysArgIleGluTrpAspTrpLysAsnIleSerTyrSerGluAsp : 123 !!:!! ||||||:!!!.!:!::!! |||||| ! !:!:!!! ! !|||||| eGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAsp 263115 : ACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGAT : 263171 124 : ArgGluIleMetLeuMetAsnAlaAsnPheGlyLysArgLeuIleIleValThrThrT : 143 !:!...|||||||||! !||||||!!.!:!|||::: !:!! ! ! ! !.!!! GlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaI 263172 : CAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGA : 263231 144 : hrValThrTyrSerGlyPheValPhePheTyrIleAlaIleProMetLysIleGlyLy : 162 ! !!! ! ! !!!.!!.!!:!!! ! ! !:!!!.!! ! !!.!.! ! ! ! lePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnVa 263232 : TCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGT : 263288 163 : sIleProAlaProAspAlaAsnIleSerPheIleProThrMetPheProPheProLys : 181 !||| !! ! !:!!! !!.!! !! !.!. ! ! ! !! !||| ! !||| lIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLys 263289 : GATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAA : 263345 182 : TyrIleAlaAspValArgTyrSerProIleAsnGluIleValPhePhePheGlnPheM : 201 ! ||| ! ||| ! !:!|||! ||||||||| !!.!! ! ||||||: GluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheL 263346 : GAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTC : 263405 202 : etCysGlyPheLeuValHisGlyValThrSerSerAlaCysSerLeuAlaAlaIlePh : 220 !!! ||||||:!!||| !!.!..!||| !.!!|||! !.!!:!!.!!|||:!:|| euSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPh 263406 : TGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTT : 263462 221 : eThrValHisAlaCysGlyGlnIleGlnValMetMetIleTrpLeuGluHisLeuIle : 239 |.!!! !|||||||||||||||:!:.!.|||:!!||| !|||:!! !.!.!!!:!: eAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheVal 263463 : CGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTG : 263519 240 : GluGlyArgLeuAspMetCysTyrSerVal<->AspGlnArgIleAlaLysIleValS : 258 .!. ! ! !||| ! ! ! !:!:!! ! ..!|||!.! !||||||. AsnGlnSerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValG 263520 : AACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTG : 263579 259 : erGlnHisValArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}Ph : 266 .!!!.|||:!!|||:!!|||{!.} 72 bp {.}|| luHisHisLeuArgValLeu{Se}++ ++{r}Ph 263580 : AACATCATCTGAGAGTTCTG{AG}gt.........................ag{T}TT : 263675 267 : eLeuSerLeuIleGluLysIleLeuGlnGlnValSerTyrMetGluPheLeuGluCys : 285 |:!!..!! !|||:!!!!.:!::!!... !:!!!!!!:!:!!|||!!.!!!:!!..! eIleAspArgIleLysAsnValMetSerThrIleCysPheValGluLeuPheLysAla 263676 : CATAGATCGTATTAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCAAGGCT : 263732 286 : ThrValAsnValCysLeuLeuGlyTyrCysAlaIleIle >>>> Target Intro : 299 |||:!!:!!:!!|||:!!|||||||||! ! !:!!! 764 bp ThrLeuAspIleCysMetLeuGlyTyrTyrIleLeuThr++ 263733 : ACGCTGGATATATGCATGCTAGGTTACTACATACTTACGgt................. : 263776 300 : n 2 >>>> GluTrpGluSerAsnHisLeuThrGluValValThrTyrValIleIle : 314 ||||||||||||:!: ::: ...:::..!|||||| !!!!:||| ++GluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIle 263777 : ........agGAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATA : 264583 315 : LeuIleThrIleIlePheAsnIlePheValPheCysTyrIleGlyGluLeuLeuAlaA : 334 ||||||:!!!!: ! !|||||||||:!!.!.|||||||||||||||:!!|||.!!! LeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrG 264584 : CTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTG : 264643 335 : spGln >>>> Target Intron 3 >>>> SerArgLysIleGlyGluValThr : 343 !:||| 78 bp !!!!:!|||:!!|||||||||..! luGln++ ++CysLysLysValGlyGluValVal 264644 : AGcaggt.........................agTGTAAGAAAGTTGGTGAGGTGGTT : 264748 344 : TyrMetIleGluTrpTyrArgLeuSerGlyLysLysLysLeuCysCysValLeuIleI : 363 |||||| .!.|||||| !||| !! !||| ! ! ||| ! :!!||||||| TyrMetSerAsnTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLeuIleI 264749 : TACATGTCGAATTGGTATTACTTACCCTACAAAGATATCCTTGATCTGATTCTCATCA : 264808 364 : leAlaMetSerAsnSerSerMetLysLeuThrAlaGlyAsnLeuIleGluLeuSerMe : 382 || !! |||!:! ! !.!.|||!!!|||||||||!!.:!!:!!.!.:!!||||| leLeuArgSerSerValValPheLysPheThrAlaGlyLysIleLeuHisMetSerMe 264809 : TTTTAAGATCCAGCGTGGTGTTTAAATTCACCGCTGGAAAGATACTTCACATGTCCAT : 264865 383 : tSerThrPheSerAspVal : 388 |! !||||||||||||||| tTyrThrPheSerAspVal 264866 : GTACACATTCAGTGACGTA : 264885 vulgar: AmOr21 7 388 . KQ414889.1 262825 264885 + 543 M 242 726 G 0 3 M 15 45 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 33 99 5 0 2 I 0 760 3 0 2 M 37 111 5 0 2 I 0 74 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262826 264885 543 + . gene_id 8 ; sequence AmOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262826 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262826 263601 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 263673 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263672 263673 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 263674 263773 . + . KQ414889.1 exonerate:protein2genome:local exon 263674 263773 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263774 263775 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263774 264537 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264536 264537 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264538 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264726 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262826 264885 543 + . alignment_id 8 ; Query AmOr21 ; Align 262826 8 726 ; Align 263555 250 45 ; Align 263675 266 99 ; Align 264538 299 111 ; Align 264727 336 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 470 Query range: 5 -> 348 Target range: 256622 -> 258417 6 : IleAspGlnAspTyrLysSerAsnValAsnLeuSerIleLysTyrSerArgArgIleS : 25 :!! ! !:!!!:!|||||| !! !:!!! !|||:!!:!!! !:!||| !!.!! ValLysThrAsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheL 256623 : GTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCC : 256680 26 : erLysMetIleGlyLeuTrpProIlePheAspLysIleSerThrIleHisLysPheLe : 44 !||| |||||| !|||||| !! ......! !!!!|||:!!.!.::! !:! euLysProIleGlyAlaTrpProProSerSerSerThrThrThrLeuGluArgAsnVa 256681 : TGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCGAAACGT : 256737 45 : uArgMetLeuTyrAsnThrIleCysTyrCysLeuLeuMetPheMetIleValLeuGly : 63 ! !!!::!!! |||! !:!!|||||| !!! !:!!:!!|||! :!::!!! ! !! lSerIleValLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIleProCys 256738 : TTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGT : 256794 64 : TrpMetTyrIleAlaPheGluValLysAsnIleTyrAspGlyLeuLysPheValSerL : 83 ! !:!::!!:!! !.!!!!:! ! ! !:!.!!||| :::||| ...! LeuLeuHisValPheLeuAspAspAspSerPheTyrMetLysValLysAsnPheGlyP 256795 : TTGCTCCATGTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtC : 256854 84 : euMetSerPheCysMetLeuSerIleThrLysTyrHisLeuIleAsnIleHisLysAs : 102 !|||||| !!! !!::!!||| !.!!!!.||| |||:!: :!!!!. ! ! roMetSerHisTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLy 256855 : CTATGAGCCATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAA : 256911 103 : pAspValArgGluCysValLysArgIleGluTrpAspTrpLysAsnIleSerTyrSer : 121 |||:!!||| ! ||||||:!!!.!|||||| !||||||!:!! :!:!!! ..! sAspIleArgTyrCysValGluHisIleGluThrAspTrpArgMetValArgArgGlu 256912 : AGACATACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAG : 256968 122 : GluAspArgGluIleMetLeuMetAsnAlaAsnPheGlyLysArgLeuIleIleValT : 141 :!!|||!:!:!!:!:|||:!!! !||||||!..||||||::: !:!! !! ! !! LysAspGlnGlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheC 256969 : AAGGATCAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTT : 257028 142 : hrThrThrValThrTyrSerGlyPheValPhePheTyrIleAlaIleProMetLysIl : 160 !.!!.!!:!!! ! ! |||||| |||:::::::!! !!:!!!!.! ysAlaAlaIleMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAsnTh 257029 : GCGCAGCTATCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACAC : 257085 161 : eGlyLysIleProAlaProAspAlaAsnIleSerPheIleProThrMetPheProPhe : 179 ! !! !|||! !!.! !:!!! !!..! ! ! ! ! ! ! !! !! ! rGluIleIleHisValGlyAsnGluThrThrIleValArgValLeuProValThrVal 257086 : GGAGATAATTCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTG : 257142 180 : ProLysTyrIleAlaAspValArgTyrSerProIleAsnGluIleValPhePhePheG : 199 !||| ! :!: !:!!||| ! ! ||||||! |||||||||||| !!|||.!.| TyrLysLysLeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheMetG 257143 : TACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGC : 257202 200 : lnPheMetCysGlyPheLeuValHisGlyValThrSerSerAlaCysSerLeuAlaAl : 218 || ! !! ..!.!!:!!!.! ! ! !||| !||| !! !||||||||||| lnThrTrpSerSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAlaAl 257203 : AAACTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGC : 257259 219 : aIlePheThrValHisAlaCysGlyGlnIleGlnValMetMetIleTrpLeu<->Glu : 236 |:!!|||.!!..!||||||! !||||||:!: |||:!:||| |||:!! ||| aValPheAlaThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGlu 257260 : TGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAG : 257316 237 : HisLeuIleGluGlyArgLeuAspMetCysTyrSerValAspGlnArgIleAlaLysI : 256 !:!!! !|||..!||| ! !:!!!:!|||!.! !| PheValAsnGluSerArgAsnArgGluLysThrPheProPheLysGlnIleGlyValI 257317 : TTTGTGAATGAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGA : 257376 257 : leValSerGlnHisValArgIleLeu{Ly} >>>> Target Intron 1 >>>> : 265 |||||..!!!.|||:!!|||:!:|||{!.} 76 bp leValGluHisHisLeuArgValLeu{Se}++ + 257377 : TTGTGGAGCATCATTTAAGAGTGCTG{AG}gt.........................a : 257479 266 : {s}PheLeuSerLeuIleGluLysIleLeuGlnGlnValSerTyrMetGluPheLeu : 283 {.}|||:!!|||! !||||||:!!:!::!!.!.!:!:!!!!!!:!:!:|||!!.!!! +{r}PheIleSerTyrIleGluGluValMetAsnArgIleCysPheLeuGluLeuPhe 257480 : g{T}TTCATATCATATATCGAGGAAGTGATGAACCGAATATGTTTTTTAGAGTTGTTT : 257533 284 : GluCysThrValAsnValCysLeuLeuGlyTyrCysAlaIleIle >>>> Target : 299 ..!||||||:!! !:!!|||:!!|||||||||! ! !:!! 6 ArgCysThrLeuAlaIleCysMetLeuGlyTyrTyrIleLeuAla++ 257534 : AGATGCACGCTGGCTATATGCATGCTGGGATACTACATTCTTGCGgt........... : 257583 300 : Intron 2 >>>> GluTrpGluSerAsnHisLeuThrGluValValThrTyrVal : 312 84 bp ||||||...!!!... ::: ...::: :::||| !! ++GluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPhe 257584 : ..............aggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTT : 258304 313 : IleIleLeuIleThrIleIlePheAsnIlePheValPheCysTyrIleGlyGluLeuL : 332 !!:|||||||||:::::: |||||||||||||||...|||||||||||||||:!!| MetIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleL 258305 : ATGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATAT : 258364 333 : euAlaAspGlnSerArgLysIle<->GlyGluValThrTyrMetIleGluTrp : 348 ||.!!!!:||| !! :::||| |||||||||:!: !:!!||| euThrGluGlnValProGluIle***LeuIleValThrTyrValHisLysTrp 258365 : TAACAGAACAGGTACCagagatttaattaattgtcaCATATGTACACAAATGG : 258417 vulgar: AmOr21 5 348 . KQ414889.1 256622 258417 + 470 M 230 690 G 0 3 M 29 87 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 41 123 G 0 3 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256623 258417 470 + . gene_id 9 ; sequence AmOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256623 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256623 257404 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258417 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258417 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256623 258417 470 + . alignment_id 9 ; Query AmOr21 ; Align 256623 6 690 ; Align 257316 236 87 ; Align 257482 266 99 ; Align 258265 299 123 ; Align 258391 340 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 425 Query range: 1 -> 335 Target range: 259730 -> 261844 2 : SerSerValLysIleAspGlnAspTyrLysSerAsnValAsnLeuSerIleLysTyrS : 21 !.!|||||| :!!!!: !..!!:!! |||:!! !:!!! !|||:!!:!!!:!! LysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerLeuGlnPheA 259731 : AAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCCAATTTA : 259788 22 : erArgArgIleSerLysMetIleGlyLeuTrpProIlePheAspLysIleSerThrIl : 40 :!||| !!.!! !||| !|||||| !|||||| !! ..!...! !!!! !:! snArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerThrThrArgLe 259789 : ATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCACGACCAGACT : 259845 41 : eHisLysPheLeuArgMetLeuTyrAsnThrIleCysTyrCysLeuLeuMetPheMet : 59 !.!.|||.!!:!! !:!::!! ! ! !||||||||| !! !:!!:!! !!! uGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIleLeuValThr 259846 : CGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATACTGGTCACC : 259902 60 : IleValLeuGlyTrpMetTyrIleAlaPheGluValLysAsnIleTyrAspGlyLeuL : 79 :!::!!! ! !! :!::!!!!: !.!!||| !:!!!:!:!:||| ! !| LeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrMetLysThrL 259903 : CTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGA : 259962 80 : ysPheValSerLeuMetSerPheCysMetLeuSerIleThrLysTyrHisLeuIleAs : 98 || ! :!!.!!! !:!:!!! !!! .!.:!!.!! !! !!!.||| !:!: ysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrThrThrLeuLe 259963 : AGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTT : 260019 99 : nIleHisLysAspAspValArgGluCysValLysArgIleGluTrpAspTrpLysAsn : 117 :!:... |||:!!! !...||||||:!!!.!:!:||| ||||||!:!! ! uLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAspTrpArgIle 260020 : GTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGAATT : 260076 118 : IleSerTyrSerGluAspArgGluIleMetLeuMetAsnAlaAsnPheGlyLysArgL : 137 |||!!! ..!:!!|||!:!.!.:!:||||||! !!|||!!.||||||!:! !: IleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgTyrV 260077 : ATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGATACG : 260136 138 : euIleIleValThrThrThrValThrTyrSerGlyPheValPhePheTyrIleAlaIl : 156 !! ! ! ! !.!!.!! !!..! ! .!!||| !!:!!! !|||! !:!:!.!! alAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCysLeuValTh 260137 : TCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTCAC : 260193 157 : eProMetLysIleGlyLysIleProAlaProAspAlaAsnIleSerPheIleProThr : 175 !:!!!..! !! ! !|||! !!.! !:!!! !!..! ! ! !! !! ! ! rValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleValHisLeuLeu 260194 : GGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTG : 260250 176 : MetPheProPheProLysTyrIleAlaAspValArgTyrSerProIleAsnGluIleV : 195 !! ! !! ! !||| ! :!: !:!!|||!.! !!||||||!!:|||||||||| ProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetAsnGluIleV 260251 : CCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGATTG : 260310 196 : alPhePhePheGlnPheMetCysGlyPheLeuValHisGlyValThrSerSerAlaCy : 214 ||.!! !! ! ||||||:!:! ||||||:!!|||:!!..! !||| !.!! !! alLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrValGlyIlePh 260311 : TTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTT : 260367 215 : sSerLeuAlaAlaIlePheThrValHisAlaCysGlyGlnIleGlnValMetMetIle : 233 !||||||||||||:!!.!.|||!.!|||||||||||||||:!:.!.|||:!:||| ! eSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMetGlu 260368 : CAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAA : 260424 234 : TrpLeuGluHisLeuIleGluGlyArgLeuAspMetCysTyrSerValAspGlnArg : 253 |||:!! !.!.!!!:!:!!:! ! ! !:!!! ! ! !.!!.! ! !:! TrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaProPheLys+ 260425 : TGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTCCTTTCAAGg : 260484 254 : >>>> Target Intron 1 >>>> IleAlaLysIleValSerGlnHisValArg : 262 257 bp .!.|||||||||:::... ..! !! - ++PheAlaLysIleLeuGlnLeuIleAlaCys 260485 : a.........................agTTcgcaaaaattttgcaattaattgCTTGT : 260768 263 : <->IleLeuLysPheLeuSerLeuIleGluLysIleLeuGlnGlnValSerTyrMetG : 281 :!:! !!..|||:!!|||! !|||||| ! :!::!!.!.!:!:!!!!!!:!:!!| ***LeuCysSerPheIleSerArgIleGluAspValMetAsnArgIleCysPheLeuG 260769 : TGATTGTGCAGCTTCATATCGCGTATCGAGGATGTGATGAACCGGATATGCTTCCTGG : 260828 282 : luPheLeuGluCysThrValAsnValCysLeuLeuGlyTyrCysAlaIleIle >>> : 299 ||!!.!!!..!||||||:!!:!!:!!|||||||||||||||! ! !:!!!!: luLeuPheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeuMet++ 260829 : AGTTGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATATTCTTATGgt... : 260884 300 : > Target Intron 2 >>>> GluTrpGluSerAsnHisLeuThrGluValValT : 310 852 bp ||||||! ..!.!. !!:!! !.!.:!! !| ++GluTrpAlaGluGlnAspIleGlnAsnLeuSerT 260885 : ......................agGAATGGGCTGAGCAAGATATACAAAATCTGTCCA : 261767 311 : hrTyrValIleIleLeuIleThrIleIlePheAsnIlePheValPheCysTyrIleGl : 329 ||||| !!!!:!!:||||||.!!||| !||||||:!!|||:!!.!!||||||||||| hrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGl 261768 : CGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGG : 261824 330 : yGluLeuLeuAlaAspGln : 335 ||||:!!|||.!!!!:||| yGluIleLeuThrGluGln 261825 : TGAAATACTAACGGAACAG : 261844 vulgar: AmOr21 1 335 . KQ414889.1 259730 261844 + 425 M 251 753 5 0 2 I 0 253 3 0 2 M 10 30 G 0 3 M 36 108 5 0 2 I 0 848 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259731 261844 425 + . gene_id 10 ; sequence AmOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259731 260483 . + . KQ414889.1 exonerate:protein2genome:local exon 259731 260483 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260484 260485 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 260484 260740 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260739 260740 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260741 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260741 260881 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259731 261844 425 + . alignment_id 10 ; Query AmOr21 ; Align 259731 2 753 ; Align 260741 253 30 ; Align 260774 263 108 ; Align 261734 299 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 366 Query range: 16 -> 335 Target range: 232462 -> 234914 17 : SerIleLysTyrSerArgArgIleSerLysMetIleGlyLeuTrpProIlePheAspL : 36 ||||||:!! !:!||| !!.!! !! ! !!!:||| !|||||| ! !! : SerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgValThrG 232463 : AGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTGTTACAG : 232520 37 : ysIleSerThrIleHisLysPheLeuArgMetLeuTyrAsnThrIleCysTyrCysLe : 55 !!! !|||! ! !!!.:!!.!.||| !! |||! !.. !! !|||:!!! !|| luThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHisSerLe 232521 : AGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCATTCTCT : 232577 56 : uLeuMetPheMetIleValLeuGlyTrpMetTyrIleAlaPheGluValLysAsnIle : 74 |:!!!!:! ! !||||||! ! !! :!!!:!||| !||||||! !! !!:!:!! uMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThrSerLeu 232578 : GATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACGAGCCTA : 232634 75 : TyrAspGlyLeuLysPheValSerLeuMetSerPheCysMetLeuSerIleThrLysT : 94 ! !!: !!:!!|||! !:!!.!!! !|||||| !! !:!!:!!.!! ! !!!.| GluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluLeuAsnT 232635 : GAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAATTGAATT : 232694 95 : yrHisLeuIleAsnIleHisLysAspAspValArgGluCysValLysArgIleGluTr : 113 || !! !:!: ! ! !:!!|||:!!! ! ! ||||||:!!!:!:!::!! yrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnValLysGl 232695 : ATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGTGAAACA : 232751 114 : pAspTrpLysAsnIleSerTyrSerGluAspArgGluIleMetLeuMetAsnAlaAsn : 132 !||||||::!|||:!!!.! ! !!! !!|||!!::!:||||||! !||||||!!. nAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsnAlaLys 232752 : GGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAACGCGAAA : 232808 133 : PheGlyLysArgLeuIleIleValThrThrThrValThrTyrSerGlyPheValPheP : 152 .!!|||::: !:!! ! !:!!.!!.!! ! !! !:!!!!!||| !!! !! ! LeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValGlySerA 232809 : CTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCGGCTCCG : 232868 153 : heTyrIleAlaIleProMetLysIleGlyLysIleProAlaProAspAlaAsnIleSe : 171 ! ! |||!.!! ! !:!::::!!:.!!! !.!! !!.! !:!!! !!:! !|| spGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSerTyrSe 232869 : ACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAGTTACTC : 232925 172 : rPheIleProThrMetPheProPheProLysTyrIleAlaAspValArgTyrSerPro : 190 |.!. !||| ! ! ! !!||| !! ! ! :!: !|||..!|||!:!|||||| rMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPheSerPro 232926 : GATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTCAGTCCG : 232982 191 : IleAsnGluIleValPhePhePheGlnPheMetCysGlyPheLeuValHisGlyValT : 210 ! |||||||||:!!||| !!.!.|||! !:!:! !||||||:!!|||:!!..!|||| ThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnSerValT 232983 : ACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACTCCGTTA : 233042 211 : hrSerSerAlaCysSerLeuAlaAlaIlePheThrValHisAlaCysGlyGlnIleGl : 229 || !.!!||||||.!!|||!.!|||:!!.!..!!:!!|||||||||||||||:!:.! hrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGlnLeuAs 233043 : CTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACAGCTGAA : 233099 230 : nValMetMetIleTrpLeuGluHisLeuIleGluGlyArgLeuAspMetCysTyrSer : 248 .|||:!!||| |||!!: !!|||:!:!!:!.!!:! !.!. ! ! nValValMetSerLysLeuAspAspLeuValAspAlaLysGlyGlnGluGluArgVal 233100 : CGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAGGAGGAGAGAGTC : 233156 249 : ValAspGlnArgIleAlaLysIleValSerGlnHisValArgIleLeu{L} >>>> : 265 !.!.!.::!!:!:!!!.! ||||||..!!!.|||:!!|||! !|||{!} AlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeu{I}+- 233157 : GCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTA{A}gg..... : 233210 266 : Target Intron 1 >>>> {ys}PheLeuSerLeuIleGluLysIleLeuGlnGl : 276 1492 bp { !} !|||:!!:!!! ! !!.:!! !:!!|| +-{le}SerLeuAlaValAsnIleAsnValAsnGluGl 233211 : ....................at{TA}AGTCTTGCAGTTAATATCAATGTTAACGAACA : 234732 277 : nValSerTyrMetGluPheLeuGluCysThrValAsnValCysLeuLeuGlyTyrCys : 295 | !!!!!:: ..!::: ||| :::... ! ! !..!! ||| nSerThrTrpAspArgTyrThrGluIlePheIleGluPheSerArgAsnSerLeuCys 234733 : AAGTACATGGGATCGGtacactgaaattttcatcgaattttcgCGTAACTCTTTATGC : 234789 296 : <->AlaIleIleGluTrpGluSerAsnHisLeuThrGluValValThrTyrValIleI : 314 ..!|||:!! ! :!!..!!!. ::::::..!:!!|||||||||: LysCysIleLeuThrSerGlnGluLysSerLysGluLysLeuAlaSerTyrValIleV 234790 : AAATGTATTTTAACTTCTCAGGAAAAgtcgaaggaaaaattagCTTCATACGTCATCG : 234849 315 : leLeuIleThrIleIlePheAsnIlePheValPheCysTyrIleGlyGluLeuLeuAl : 333 !:! !:!::!!!!:! !||||||||||||:::|||||||||||||||||| !|||.! alTyrValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuTh 234850 : TGTACGTGTCCATGACATTtaatatattcatattttgttACATCGGAGAGACGCTTAC : 234906 334 : aAspGln : 335 !!!:||| rGluGln 234907 : AGAGCAG : 234914 vulgar: AmOr21 16 335 . KQ414889.1 232462 234914 + 366 M 248 744 S 0 1 5 0 2 I 0 1488 3 0 2 S 1 2 M 30 90 G 0 3 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232463 234914 366 + . gene_id 11 ; sequence AmOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232463 233207 . + . KQ414889.1 exonerate:protein2genome:local exon 232463 233207 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 233208 233209 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local intron 233208 234699 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234698 234699 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 234700 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234700 234914 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232463 234914 366 + . alignment_id 11 ; Query AmOr21 ; Align 232463 17 744 ; Align 234702 266 90 ; Align 234795 296 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 310 Query range: 298 -> 388 Target range: 224323 -> 224658 299 : GluTrpGluSerAsnHisLeuThrGluValValThrTyrValIleIleLeuIleThrI : 318 ||||||...|||:::|||||||||...!.!||||||||| !!|||:!!|||!!::!:: GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 319 : leIlePheAsnIlePheValPheCysTyrIleGlyGluLeuLeuAlaAspGlnSerAr : 337 :: ||||||||||||:::|||||||||||||||||||||:!!|||!!:||| :: euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlnValLy 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggtgaa : 224438 338 : g{L} >>>> Target Intron 1 >>>> {ys}IleGlyGluValThrTyrMet : 345 :{|} 65 bp {||}||||||::!|||:!!|||||| s{L}-+ +-{ys}IleGlyGlnValSerTyrMet 224439 : a{a}at.........................aa{aa}attggacaAGTGTCGTACATG : 224527 346 : IleGluTrpTyrArgLeuSerGlyLysLysLysLeuCysCysValLeuIleIleAlaM : 365 |||!!:||||||||||||!!!|||!!.|||||||||||||||:!!||||||||||||| IleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaM 224528 : ATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGA : 224587 366 : etSerAsnSerSerMetLysLeuThrAlaGlyAsnLeuIleGluLeuSerMetSerTh : 384 ||||||||||||||!!:||||||||||||||||||:!!:!!||||||!!!:!:!!!|| etSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrTh 224588 : TGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCAC : 224644 385 : rPheSerAspVal : 388 ||||.!!|||||| rPheGlyAspVal 224645 : TTTCGGTGACGTA : 224658 vulgar: AmOr21 298 388 . KQ414889.1 224323 224658 + 310 M 39 117 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224658 310 + . gene_id 12 ; sequence AmOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224324 224441 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224441 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224442 224443 . + . intron_id 1 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local intron 224442 224506 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224505 224506 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 224507 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224507 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224658 310 + . alignment_id 12 ; Query AmOr21 ; Align 224324 299 117 ; Align 224509 339 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 300 Query range: 1 -> 265 Target range: 266595 -> 267390 2 : SerSerValLysIleAspGlnAspTyrLysSerAsnValAsnLeuSerIleLysTyrS : 21 ..!|||:!! !|||!!: !:!! !!.||| !:!!! !|||:!::!!! ! GluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerLeuGlnLeuA 266596 : GAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCCTGCAATTGA : 266653 22 : erArgArgIleSerLysMetIleGlyLeuTrpProIlePheAspLysIleSerThrIl : 40 :!||| !!.!! !||| |||||| !|||||| !!.... ! !|||! !:! snArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuThrSerLysLe 266654 : ATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCACATCTAAACT : 266710 41 : eHisLysPheLeuArgMetLeuTyrAsnThrIleCysTyrCysLeuLeuMetPheMet : 59 !.!.::!.!!:!! ! !! ! !..!||||||||||||! !:!!:!!|||! uGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIleLeuPheThr 266711 : CGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATACTGTTCACC : 266767 60 : IleValLeuGlyTrpMetTyrIleAlaPheGluValLysAsnIleTyrAspGlyLeuL : 79 :!!:!!! ! !!! !.!.:!!:!!!.!.!.|||! !:!!!:!||| ! !:!!| ValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgThrLysValL 266768 : GTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTACGAAAGTGA : 266827 80 : ysPheValSerLeuMetSerPheCysMetLeuSerIleThrLysTyrHisLeuIleAs : 98 || ! !!.!!! !:!!||| !!! .!.:!!.!! !! !!!.||| ! !:!: ysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrThrThrLeuLe 266828 : AGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACACCACACTGTT : 266884 99 : nIleHisLysAspAspValArgGluCysValLysArgIleGluTrpAspTrpLysAsn : 117 :!!!.!!.. ! !!::!!|||! ||||||:!!!.!!!::!! ||||||!:!! ! uLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIle 266885 : GCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGATTGGAGGATC : 266941 118 : IleSerTyrSerGluAspArgGluIleMetLeuMetAsnAlaAsnPheGlyLysArgL : 137 :!:!!! !!||||||!:!:!!:!:||||||! !||||||!...!!|||::: !: ValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleGlyArgTyrI 266942 : GTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCGGTCGTTACA : 267001 138 : euIleIleValThrThrThrValThrTyrSerGlyPheValPhePheTyrIleAlaIl : 156 !! !||| !! !.!!.!! !!! ! ! !!!||| !!:!! !!:!! !:!: !! leAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCysValIleTh 267002 : TTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGTGATAAC : 267058 157 : eProMetLysIleGlyLysIleProAlaProAspAlaAsnIleSerPheIleProThr : 175 !!.!.! !!: !! :!: !!.! !:!!! !!.!! ! ! ! !! ! ! rAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleValHisLeuLeu 267059 : GGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTACATCTGTTG : 267115 176 : MetPheProPheProLysTyrIleAlaAspValArgTyrSerProIleAsnGluIleV : 195 ! ! !! !! !||| ! !!: !! ||| ! !||||||! |||||||||| ProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrAsnGluIleV 267116 : CCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGAACGAGATTG : 267175 196 : alPhePhePheGlnPheMetCysGlyPheLeuValHisGlyValThrSerSerAlaCy : 214 ||.!! !!! ||||||:!:! ||||||:!!|||:!!..! !..! !.!!|||! alLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValValGlyAlaPh 267176 : TCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCGGTGCTTT : 267232 215 : sSerLeuAlaAlaIlePheThrValHisAlaCysGlyGlnIleGlnValMetMetIle : 233 !||||||||||||:!:|||.!!!.!|||||||||||||||:!:...|||:!!|||!!: eSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerValLeuMetMet 267233 : CAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTGATGATG : 267289 234 : TrpLeuGluHisLeuIleGluGlyArgLeuAspMetCysTyrSerVal<->AspGlnA : 252 |||:!!:!!.!.!!!:!:.!. !! ! !|||! ! ! !:!||| !.!.! TrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValCysPheAspL 267290 : TGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTTGCTTCGATA : 267349 253 : rgIleAlaLysIleValSerGlnHisValArgIleLeuLys : 265 :!|||!.! !:!!|||..!!!.|||:!!|||:!!|||!:! ysIleGlyValValValGluHisHisLeuArgValLeuArg 267350 : AGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGAGG : 267390 vulgar: AmOr21 1 265 . KQ414889.1 266595 267390 + 300 M 248 744 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266596 267390 300 + . gene_id 13 ; sequence AmOr21 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266596 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266596 267390 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266596 267390 300 + . alignment_id 13 ; Query AmOr21 ; Align 266596 2 744 ; Align 267343 250 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 299 Query range: 298 -> 403 Target range: 210663 -> 212081 299 : GluTrpGluSerAsnHisLeuThrGluValValThrTyrValIleIleLeuIleThrI : 318 ||||||!!:|||!!. !!! !! !... !:!!||||||:!!:!!:!!|||! !:!!: GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValLeuLeuThrSerV 210664 : GAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTACTCCTCACTTCTG : 210721 319 : leIlePheAsnIlePheValPheCysTyrIleGlyGluLeuLeuAlaAspGln >>> : 336 !!! ||||||||||||:!!||||||||||||||||||:!!||||||!!:||| alThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAlaGluGln++ 210722 : TCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGCTGAACAggt... : 210777 337 : > Target Intron 1 >>>> SerArgLysIleGlyGluValThrTyrMetIleG : 347 999 bp !!! !|||:!!|||||| !:!!|||||||||! ++ThrValLysValGlyGluLysSerTyrMetIleA 210778 : ......................agACAGTAAAAGTTGGAGAAAAGTCTTACATGATCG : 211807 348 : luTrpTyrArgLeuSerGlyLysLysLysLeuCysCysValLeuIleIleAlaMetSe : 366 !:|||||||||:!! !!||||||||| ||| ! !|||!!:|||:!!||||| spTrpTyrArgMetProGlyLysLysGlyLeuValValProLeuMetIleSerMetSe 211808 : ACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGATGATCTCCATGTC : 211864 367 : rAsnSerSerMetLysLeuThrAlaGlyAsnLeuIleGluLeuSerMetSerThrPhe : 385 |:!!|||!!!! |||:!!||||||||||||||||||! ||||||!!:|||!:!||| rHisSerThrThrLysIleThrAlaGlyAsnLeuIleValLeuSerIleSerSerPhe 211865 : ACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTTCTTTCAATCAGTAGTTTC : 211921 386 : SerAsp >>>> Target Intron 2 >>>> ValValLysThrSerPheAlaPh : 395 .!!||| 104 bp |||:!!||||||||| ! .!!!: GlyAsp++ ++ValIleLysThrSerValThrTy 211922 : GGTGACgt.........................agGTTATCAAGACTTCGGTAACATA : 212055 396 : eLeuAsnValLeuArgThrLeuThr : 403 !||||||:!!|||||||||!!!||| rLeuAsnMetLeuArgThrPheThr 212056 : CTTGAACATGCTACGAACATTCACA : 212081 vulgar: AmOr21 298 403 . KQ414889.1 210663 212081 + 299 M 37 111 5 0 2 I 0 995 3 0 2 M 52 156 5 0 2 I 0 100 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210664 212081 299 + . gene_id 14 ; sequence AmOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211929 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 211930 211931 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 211930 212033 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 212032 212033 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 212034 212081 . + . KQ414889.1 exonerate:protein2genome:local exon 212034 212081 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210664 212081 299 + . alignment_id 14 ; Query AmOr21 ; Align 210664 299 111 ; Align 211774 336 156 ; Align 212034 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 288 Query range: 2 -> 265 Target range: 274344 -> 275136 3 : SerValLysIleAspGlnAspTyrLysSerAsnValAsnLeuSerIleLysTyrSerA : 22 :!!:!!!!.:!! ! !:!!!:! ! ||| ! !:!!! !|||:!::!!! !:!| AlaIleAsnValThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnA 274345 : GCGATAAACGTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACC : 274402 23 : rgArgIleSerLysMetIleGlyLeuTrpProIlePheAspLysIleSerThrIleHi : 41 || !!.!!! !||| |||||| !||||||:!! !... ! !!!!! !.!!.! rgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGl 274403 : GATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGA : 274459 42 : sLysPheLeuArgMetLeuTyrAsnThrIleCysTyrCysLeuLeuMetPheMetIle : 60 .::!.!!||| ! ||| :::|||||||||!!!:!!:!:! !! :!! uArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrVal 274460 : ACGAATCCTTTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTT : 274516 61 : ValLeuGlyTrpMetTyrIleAlaPheGluValLysAsnIleTyrAspGlyLeuLysP : 80 :!!! !.!! .!.:!!||| !.!.! !! !:!!!:!:!!:!! !||||||! IleProSerIlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysL 274517 : ATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGT : 274576 81 : heValSerLeuMetSerPheCysMetLeuSerIleThrLysTyrHisLeuIleAsnIl : 99 !.:!!.!!! !:!:.!! !!! .!.:!!.!! !! !!!.||| ! !:!: :! euLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLe 274577 : TGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCT : 274633 100 : eHisLysAspAspValArgGluCysValLysArgIleGluTrpAspTrpLysAsnIle : 118 !!.!!.. ! !!::!!|||! ||||||:!!!.!!!::!! ||||||!:!! !:!: uArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleVal 274634 : ACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTG : 274690 119 : SerTyrSerGluAspArgGluIleMetLeuMetAsnAlaAsnPheGlyLysArgLeuI : 138 !!! !!||||||!:!:!!:!:||||||! !||||||!!..!!|||::: !:!! ThrArgProGluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValA 274691 : ACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCG : 274750 139 : leIleValThrThrThrValThrTyrSerGlyPheValPhePheTyrIleAlaIlePr : 157 ||| !! !.!!.!! !!! ! ! !!!||| !!:!!! !!:!! !:!: !! ! ! laIlePheCysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAl 274751 : CGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGC : 274807 158 : oMetLysIleGlyLysIleProAlaProAspAlaAsnIleSerPheIleProThrMet : 176 !.!.! !!: !! :!!! !!.! !:!!! !!.!! !!!! ! ! ! ! ! aPheThrMetGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuPro 274808 : GTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCG : 274864 177 : PheProPheProLysTyrIleAlaAspValArgTyrSerProIleAsnGluIleValP : 196 ! ! ! ! !||| ! |||!.!! ||| ! ||||||! ||||||||||||. CysLysAlaTyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValL 274865 : TGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCC : 274924 197 : hePhePheGlnPheMetCysGlyPheLeuValHisGlyValThrSerSerAlaCysSe : 215 !! !! ||||||:!!! ||||||:!!|||:!!..! !.!! !.!!|||! !|| euAlaSerGlnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSe 274925 : TTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAG : 274981 216 : rLeuAlaAlaIlePheThrValHisAlaCysGlyGlnIleGlnValMetMetIleTrp : 234 ||||||||||:!:|||.!!!.!||||||! !||||||:!:...|||:!!||||||||| rLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrp 274982 : CCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGG : 275038 235 : LeuGluHisLeuIleGluGlyArgLeuAspMetCysTyrSerVal<->AspGlnArgI : 253 :!! .!.!!!:!:.!. ! ! !|||... :::||| .....!| IleThrGluPheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluI 275039 : ATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGA : 275098 254 : leAlaLysIleValSerGlnHisValArgIleLeuLys : 265 ||!.! !:!!|||..!!!.|||:!!|||:!!|||!:! leGlyValValValGluHisHisLeuArgValLeuArg 275099 : TCGGCGTGGTTGTCGAACATCATCTGAGGGTACTCAGG : 275136 vulgar: AmOr21 2 265 . KQ414889.1 274344 275136 + 288 M 247 741 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274345 275136 288 + . gene_id 15 ; sequence AmOr21 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274345 275136 . + . KQ414889.1 exonerate:protein2genome:local exon 274345 275136 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274345 275136 288 + . alignment_id 15 ; Query AmOr21 ; Align 274345 3 741 ; Align 275089 250 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 273 Query range: 9 -> 265 Target range: 289717 -> 290482 10 : TyrLysSerAsnValAsnLeuSerIleLysTyrSerArgArgIleSerLysMetIleG : 29 |||:!!!!!:!!:!!..!! !!!!.!!:!!! !!!!.! !!|||! !||| !|||| TyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleLeuLysProIleG 289718 : TACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAG : 289775 30 : lyLeuTrpPro<->IlePheAspLysIleSerThrIleHisLysPheLeuArgMetLe : 47 ||:!!!::||| :!!|||..!::: |||! ! !.!.::! ! !:!!|| lyMetTyrProPheValPheSerArgAlaSerArgArgGluArgThrAlaSerValLe 289776 : GCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTT : 289832 48 : uTyrAsnThrIleCysTyrCysLeuLeuMetPheMetIleValLeuGlyTrpMetTyr : 66 | ! ! !:!!|||! !! :!!|||..!|||!!:||||||! ! ! ! :!! uLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValProPheSerHisHis 289833 : GCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCAC : 289889 67 : IleAlaPheGluValLysAsnIleTyrAspGlyLeuLysPheValSerLeuMetSerP : 86 :!! !|||...! !!!.:!!!!: !! !:!!||| !:!!.!!! !:!!!!!| ValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuGlyProLeuThrP 289890 : GTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGT : 289949 87 : heCysMetLeuSerIleThrLysTyrHisLeuIleAsnIleHisLysAspAspValAr : 105 |||||:!! !!!!.!! !|||||| !! !.!!!:!!!: ! ...! :!! ! heCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGlySerAlaIleGl 289950 : TCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGG : 290006 106 : gGluCysValLysArgIleGluTrpAspTrpLysAsnIleSerTyrSerGluAspArg : 124 !...|||||||||!.!|||||| ! |||||||||! :!: !! !!..!!!: !!||| yArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAspGluAspHisArg 290007 : TCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGT : 290063 125 : GluIleMetLeuMetAsnAlaAsnPheGlyLysArgLeuIleIleValThrThrThrV : 144 ! |||||||||! !!!.!!...!..!!::!!.!||||||! !:!! !.!!! ! ValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysLeuCysAlaIleP 290064 : GTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCT : 290123 145 : alThrTyrSerGlyPheValPhePheTyrIleAlaIleProMetLysIleGlyLysIl : 163 !! !|||! !||| !:!!! !!:! !!! !!.!||||||:!! !||| heLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPheSerLysLys-- 290124 : TCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAAG-- : 290180 164 : eProAlaProAspAlaAsnIleSerPheIleProThrMetPheProPheProLysTyr : 182 ::! !:!!!.!|||:!:!!!.!!! !||| !! !:!||| ! !:!! ! ----SerValAsnGlyAsnValThrIleArgProLeuThrTyrProGlyTyrGluGlu 290181 : ----AGCGTGAACGGTAACGTGACTATCAGACCTCTAACTTATCCCGGTTACGAGGAG : 290231 183 : IleAlaAspValArgTyrSerProIleAsnGluIleValPhePhePheGlnPheMetC : 202 .!! !||||||!:! ! |||||| !!||||||||||||! !.!.!!.! !:!:! PhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetHisCysValT 290232 : TTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCT : 290291 203 : ysGlyPheLeuValHisGlyValThrSerSerAlaCysSerLeuAlaAlaIlePheTh : 221 !! !.!.:!!..! ..!:!!|||! !:!!|||! !||||||.!!.!!||||||.! yrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePheAl 290292 : ACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGC : 290348 222 : rValHisAlaCysGlyGlnIleGlnValMetMetIleTrpLeuGluHisLeuIleGlu : 240 !..!|||.!!||||||||||||:!!:!!...! !! !!|||||| !!|||! !:!! aThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAspLeuThrLys 290349 : CACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTGACAAAG : 290405 241 : GlyArgLeuAspMetCysTyrSerValAspGlnArgIleAlaLysIleValSerGlnH : 260 !! !!:!! :!! ! .!!|||..!.!.|||:!:||| :!!|||||| | ArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValValValSerGlyH 290406 : AGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTGTGAGCGGTC : 290465 261 : isValArgIleLeuLys : 265 |||||..!||||||||| isValGluIleLeuLys 290466 : ACGTGGAGATCTTGAAG : 290482 vulgar: AmOr21 9 265 . KQ414889.1 289717 290482 + 273 M 23 69 G 0 3 M 130 390 G 2 0 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289718 290482 273 + . gene_id 16 ; sequence AmOr21 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289718 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289718 290482 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289718 290482 273 + . alignment_id 16 ; Query AmOr21 ; Align 289718 10 69 ; Align 289790 33 390 ; Align 290180 165 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 248 Query range: 1 -> 274 Target range: 236810 -> 237626 2 : SerSerValLysIleAspGlnAspTyrLysSerAsnValAsnLeuSerIleLysTyrS : 21 !.!!!!||| ! !!!: :!! ! :!!!:! !:!!! !|||:!!:!!!::! LysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpA 236811 : AAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGA : 236868 22 : erArgArgIleSerLysMetIleGlyLeuTrpProIlePheAspLysIleSerThrIl : 40 :!||| !! ! !|||! |||||| !|||||| |||... |||!.!:! snArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSer------SerAsnLe 236869 : ATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCG------TCGAACCT : 236919 41 : eHisLysPheLeuArgMetLeuTyrAsnThrIleCysTyrCysLeuLeuMetPheMet : 59 !.!.!:! !:!! ! :!!! |||..!||||||||| ! !:!!:!:||| ! uGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSer 236920 : CGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCG : 236976 60 : IleValLeuGlyTrpMetTyrIleAlaPheGluValLysAsnIleTyrAspGlyLeuL : 79 |||:!!! ! !!! !:!!:!!:!! !.!.||| ! !!.!.!!||| !:!!| IleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValL 236977 : ATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGA : 237036 80 : ysPheValSerLeuMetSerPheCysMetLeuSerIleThrLysTyrHisLeuIleAs : 98 ||.!.:!!.!!! !:!!||| !!! :!!!!!!!!|||! !!..||| !:!!:!: ysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLe 237037 : AAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTT : 237093 99 : nIleHisLysAspAspValArgGluCysValLysArgIleGluTrpAspTrpLysAsn : 117 :!:!..::: ! !:!!|||.!.! ! !!!!.!.!!!:||| ||||||!:!!.. uLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThr 237094 : GCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACG : 237150 118 : IleSerTyrSerGluAspArgGluIleMetLeuMetAsnAlaAsnPheGlyLysArgL : 137 ! ::: ...||| :::|||:::||||||! ! !!|||!!.|||.!!::! ! ThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrA 237151 : ACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACG : 237210 138 : euIleIleValThrThrThrValThrTyrSerGlyPheValPhePheTyrIleAlaIl : 156 ! ||| ! !|||! ! !!! !:!!.!!|||.!.:!! !:!! !:!! !! laAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetTh 237211 : CGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGAC : 237267 157 : eProMetLysIleGlyLysIleProAlaProAspAlaAsnIleSerPheIleProThr : 175 ! !! ! ! ! :!! !!.! !:!! !!.!! ! !!!. ! ! ! rAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLeuArgValLeu 237268 : AGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGCGTGCTG : 237324 176 : MetPheProPheProLysTyrIleAlaAspValArgTyrSerProIleAsnGluIleV : 195 !!.|||.!. !||| :!! ! ||| ! !:! !!!!:|||!!:|||| ProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnAspIleV 237325 : CCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGACATCG : 237384 196 : alPhePhePheGlnPheMetCysGlyPheLeuValHisGlyValThrSerSerAlaCy : 214 || !!!!.! ||||||:!:! !||||||:!!!.!:!!..! !.!!! !|||!.! alValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSerValIl 237385 : TTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAGTGTTAT : 237441 215 : sSerLeuAlaAlaIlePheThrValHisAlaCysGlyGlnIleGlnValMetMetIle : 233 ||||||.!!::! !.!.||| !||||||! !||||||:!:...|||:!:|||:!: eSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValValMetLeu 237442 : AAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTTATGTTG : 237498 234 : TrpLeuGluHisLeuIle<->GluGlyArgLeuAspMetCysTyrSerValAspGlnA : 252 ! !:!!||| !!!!!:!: |||!.!|||! ! ! !!..! ! !.!.. SerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAspHisPheAspG 237499 : TCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATCATTTCGACG : 237558 253 : rgIleAlaLysIleValSerGlnHisValArgIleLeuLysPheLeuSerLeuIleGl : 271 .!||| !!! !||||||..!:!!|||:!!|||:!:||||||! :!!!!!|||:!:!! luIleProThrIleValGluGluHisLeuArgValLeuLys***ValCysLeuLeuAs 237559 : AAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAGTATGTTTGTTGGA : 237615 272 : uLysIleLeu : 274 : !|||||| pLeuIleLeu 237616 : TTTGATTTTG : 237626 vulgar: AmOr21 1 274 . KQ414889.1 236810 237626 + 248 M 34 102 G 2 0 M 202 606 G 0 3 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236811 237626 248 + . gene_id 17 ; sequence AmOr21 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236811 237626 . + . KQ414889.1 exonerate:protein2genome:local exon 236811 237626 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236811 237626 248 + . alignment_id 17 ; Query AmOr21 ; Align 236811 2 102 ; Align 236913 38 606 ; Align 237522 240 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 235 Query range: 168 -> 335 Target range: 300189 -> 301797 169 : AsnIleSerPheIleProThrMetPheProPheProLysTyrIleAlaAspValArgT : 188 ||| !!!!!:!! !||| ! !:!||| ! ! ! !::.!! !|||..!!:! AsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnT 300190 : AATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAA : 300247 189 : yrSerProIleAsnGluIleValPhePhePheGlnPheMetCysGlyPheLeuValHi : 207 !||||||! ! !!||||||||||||||||||... .!....!.!.!.:!!:!!:! hrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTy 300248 : CCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTA : 300304 208 : sGlyValThrSerSerAlaCysSerLeuAlaAlaIlePheThrValHisAlaCysGly : 226 !..!||||||!!!:!!|||! !||||||||||||||||||..!..!||| !|||||| rAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGly 300305 : CAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGA : 300361 227 : GlnIleGlnValMetMetIleTrpLeuGluHisLeuIleGluGlyArgLeuAspMetC : 246 |||||||||:!!..!||| ! |||||| !!|||:!:||| !!! ! !!!:! ! GlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrGlyGluLysA 300362 : CAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGGGAGAGAAGG : 300421 247 : ysTyrSerValAspGlnArgIleAlaLysIleValSerGlnHisValArgIleLeu{L : 265 ! !!.!! !|||! !:!!!.! |||||| !!.!.||||||!:!:!!|||{! spAspGlyProAspProLeuValVal---IleValArgAspHisValLysValLeu{A 300422 : ACGACGGTCCTGATCCTTTGGTCGTT---ATCGTTCGAGATCACGTGAAGGTTTTA{A : 300475 266 : y} >>>> Target Intron 1 >>>> {s}PheLeuSerLeuIleGluLysIle : 273 :} 1110 bp {!} !! !!!!! !.!!... !! ! r}++ ++{g}AspProCysSerPheArg***Pro 300476 : G}gt.........................ag{A}GACCCGTGTTCCTTCCGTTAGCCA : 301609 274 : LeuGlnGlnValSerTyrMetGluPheLeuGluCysThrValAsnValCysLeuLeuG : 293 ! !!.:!!!!! ::: ...||| |||:!!|||!.! !!!||| ThrPheHisLeuCysAlaValIleLysPheGluSerThrLeuAsnAlaLysPheLeuA 301610 : ACTTTTCATCTCTGCgctgtaattaaatttgaatctACTTTAAATGCAAAGTTTTTAC : 301669 294 : lyTyrCysAlaIleIleGluTrpGluSerAsnHisLeuThrGluValValThrTyrVa : 312 !! ! !.!! ||||||:!!!:!!:! !! !! !! :!!:!!|||!:! ! rgValIle***Phe***GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePh 301670 : GAGTAATTTGATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTT : 301726 313 : lIleIleLeuIleThrIleIlePheAsnIlePheValPheCysTyrIleGlyGluLeu : 331 !! !:!:|||! :!!.!!! !||||||||||||:!!||||||||||||||||||:!! eThrLeuLeuThrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIle 301727 : CACTCTGTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATT : 301783 332 : LeuAlaAspGln : 335 |||:!!!!:||| LeuSerGluGln 301784 : CTTTCCGAACAG : 301797 vulgar: AmOr21 168 335 . KQ414889.1 300189 301797 + 235 M 86 258 G 1 0 M 9 27 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300190 301797 235 + . gene_id 18 ; sequence AmOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300190 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300190 300476 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300190 301797 235 + . alignment_id 18 ; Query AmOr21 ; Align 300190 169 258 ; Align 300448 256 27 ; Align 301588 266 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 229 Query range: 172 -> 270 Target range: 202682 -> 203170 173 : IleProThrMetPheProPheProLysTyrIleAlaAspValArgTyrSerProIleA : 192 :!! !..!! !||| !!||| !! !!:!||| !||||||||||||||||||:!:| LeuSerValThrPheSerPheSerGlyPheIleIleAspValArgTyrSerProValA 202683 : CTTAGTGTGACGTTCTCCTTCTCAGGATTTATCATTGATGTTAGATACAGTCCTGTGA : 202740 193 : snGluIleValPhePhePheGlnPheMetCysGlyPheLeuValHisGlyValThrSe : 211 |||||||| !!|||! .!!!:!.!!:!:..!! !.!!|||:!!|||||||||||| snGluIlePhePheSerIleArgIleValAlaValIleLeuIleHisGlyValThrVa 202741 : ACGAGATCTTCTTCTCGATTCGAATCGTAGCTGTCATCCTAATTCACGGTGTCACTGT : 202797 212 : rSerAlaCysSerLeuAlaAlaIlePheThrValHisAlaCysGlyGlnIleGlnVal : 230 !.!!||||||!!!|||.!!|||:!:|||.!!||||||! !|||||||||!!:.!.||| lGlyAlaCysCysLeuThrAlaLeuPheAlaValHisAspCysGlyGlnMetAspVal 202798 : AGGAGCTTGTTGCTTGACAGCGTTGTTTGCGGTTCACGATTGCGGCCAGATGGACGTT : 202854 231 : MetMetIleTrpLeuGluHisLeuIleGluGlyArgLeuAspMet{C} >>>> Tar : 246 :!!||| !|||||||||||||||!!:!!:||||||! !||||||{ } LeuMetAlaTrpLeuGluHisLeuMetAspGlyArgSerAspMet{L}++ 202855 : TTGATGGCCTGGCTGGAACATTTGATGGATGGTCGTTCGGATATG{A}gt........ : 202905 247 : get Intron 1 >>>> {ys}TyrSerValAspGlnArgIleAlaLysIleValSe : 258 194 bp { } ! !:!|||:!! |||!!:!.!! |||||||| -+{ys}GlnAsnValAsnGlyArgMetValThrIleValSe 202906 : .................tg{AG}CAAAATGTGAATGGCAGAATGGTGACCATCGTGAG : 203132 259 : rGlnHisValArgIleLeuLysPheLeuSerLeuIle : 270 |||||||:!!||||||||||||! !:!!..!! !||| rGlnHisIleArgIleLeuLysCysValGluCysIle 203133 : CCAACACATACGGATACTGAAATGTGTGGAATGTATT : 203170 vulgar: AmOr21 172 270 . KQ414889.1 202682 203170 + 229 M 73 219 S 0 1 5 0 2 I 0 190 3 0 2 S 1 2 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202683 203170 229 + . gene_id 19 ; sequence AmOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 202683 202902 . + . KQ414889.1 exonerate:protein2genome:local exon 202683 202902 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 202903 202904 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 202903 203096 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 203095 203096 . + . intron_id 0 ; splice_site "TG" KQ414889.1 exonerate:protein2genome:local cds 203097 203170 . + . KQ414889.1 exonerate:protein2genome:local exon 203097 203170 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202683 203170 229 + . alignment_id 19 ; Query AmOr21 ; Align 202683 173 219 ; Align 203099 247 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 225 Query range: 114 -> 265 Target range: 304425 -> 304869 115 : TrpLysAsnIleSerTyrSerGluAspArgGluIleMetLeuMetAsnAlaAsnPheG : 134 !:::!!.!.:!:..!! ! !..!|||||||||!!:||||||! !!!.!.!..!.| TyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetG 304426 : TATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGG : 304483 135 : lyLysArgLeuIleIleValThrThrThrValThrTyrSerGlyPheValPhePheTy : 153 ||::!!.!|||! |||:!! !.!!! ! !!! !|||!!!||| !..!.!!!:!:! lyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHi 304484 : GTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCA : 304540 154 : rIleAlaIleProMetLysIleGlyLysIleProAlaProAspAlaAsnIleSerPhe : 172 !! !.!!!:! !.!. !! !|||! ! ! !.! !!!: !||| !!!!.!! sThrValMetGlnPheAlaThrGlyThrTyr---ValAspGluTyrAsnArgThrIle 304541 : CACGGTCATGCAGTTCGCGACCGGAACGTAT---GTGGATGAGTATAATCGTACGATT : 304594 173 : IleProThrMetPheProPheProLysTyrIleAlaAspValArgTyrSerProIleA : 192 ! !||| !:!:!:!||| ! !!.. !:!! !||||||!:! ||||||||| LysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIleT 304595 : AAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTT : 304654 193 : snGluIleValPhePhePheGlnPheMetCysGlyPheLeuValHisGlyValThrSe : 211 !!|||:!:|||!:!||| !!!!.! !|||||||||!:!:!!:!!:!!..!:!!|||:! yrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThrAl 304655 : ACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGC : 304711 212 : rSerAlaCysSerLeuAlaAlaIlePheThrValHisAlaCysGlyGlnIleGlnVal : 230 !.!!||||||.!!|||||||||:!!|||.!!..!||||||||||||||||||.!.:!! aGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIle 304712 : TGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATC : 304768 231 : MetMetIleTrpLeuGluHisLeuIleGluGlyArgLeuAspMetCysTyrSerValA : 250 :!:||| ! ! |||! !!|||:!!.!..!!!:! !... ..!:!!| ValMetSerArgLeuGlyAspLeuValAsnSerLysGluSerSer------AspLeuA 304769 : GTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCATCT------GATTTAG : 304822 251 : spGlnArgIleAlaLysIleValSerGlnHisValArgIleLeuLys : 265 ||:!!|||:!! !:!!||||||..!!!.|||:!!|||||||||!:! spLysArgLeuIleGluIleValGluHisHisLeuArgIleLeuArg 304823 : ATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTAAGG : 304869 vulgar: AmOr21 114 265 . KQ414889.1 304425 304869 + 225 M 49 147 G 1 0 M 81 243 G 2 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304426 304869 225 + . gene_id 20 ; sequence AmOr21 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304426 304869 . + . KQ414889.1 exonerate:protein2genome:local exon 304426 304869 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 304426 304869 225 + . alignment_id 20 ; Query AmOr21 ; Align 304426 115 147 ; Align 304573 165 243 ; Align 304816 248 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 217 Query range: 5 -> 207 Target range: 294657 -> 295263 6 : IleAspGlnAspTyrLysSerAsnValAsnLeuSerIleLysTyrSerArgArgIleS : 25 !!:|||.!. ! !!!:!!:!:!!||| !|||:!!||||||!!!||||||:!:! MetAspAspThrAsnArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuL 294658 : ATGGACGATACTAACAGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGT : 294715 26 : erLysMetIleGlyLeuTrpPro<->IlePheAspLysIleSerThrIleHisLysPh : 43 !||| !||||||||||||||| |||!:!..! ! ! !|||! !:!::!!||| ! euLysProIleGlyLeuTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysVa 294716 : TGAAACCGATCGGTCTTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGT : 294772 44 : eLeuArgMetLeuTyrAsnThrIleCysTyrCysLeuLeuMetPheMetIleValLeu : 62 !||| !!!::!! ! !.!! ||| ! !:!!:!!|||:!::!!|||! ! lLeuSerIleIleLeuIleAlaTrpCysThrLeuThrValLeuPheValLeuValPro 294773 : CCTTTCGATAATTCTGATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCA : 294829 63 : GlyTrpMetTyrIleAlaPheGluValLysAsnIleTyrAspGlyLeuLysPheValS : 82 !! ! !:! !!.!|||.!.|||||||||::: !:!!|||.!!:!!. CysGlyTyrPheCysValPheHisValLysAsnValLysLeuLysMetLysLeuLeuG 294830 : TGCGGATACTTCTGTGTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGG : 294889 83 : erLeuMetSerPheCysMetLeuSerIleThrLysTyrHisLeuIleAsnIleHisLy : 101 !!! !:!: !!:!! !|||||||||!!: !!:!||| !! !:!! !:!: ! ! lyProValLeuTyrSerMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysTh 294890 : GTCCGGTACTATACTCTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAAC : 294946 102 : sAspAspValArgGluCysValLysArgIleGluTrpAspTrpLysAsnIleSerTyr : 120 ! !! !!!:!.!.|||:!!:!! !|||||| ||||||||| |||..! !! rProAlaPheLysHisCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsn 294947 : GCCCGCGTTCAAGCATTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAAT : 295003 121 : SerGluAspArgGluIleMetLeuMetAsnAlaAsnPheGlyLysArgLeuIleIleV : 140 !!||| !!|||! !||||||:!!! !||||||! !! !:!!|||:!!! !:!!! ProGluHisArgAlaIleMetIleLysAsnAlaMetValThrGlnArgMetThrValA 295004 : CCGGAACACCGAGCGATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCG : 295063 141 : alThrThrThrValThrTyrSerGlyPheValPhePheTyrIleAlaIleProMetLy : 159 .! !|||! !:!!! !||||||..! |||! !:!:!! ! !:::|||... laPheThrIleIleIleTyrSerSerAlaValSerTyrHisAlaIleValProPhePh 295064 : CTTTTACTATTATAATCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccattttt : 295120 160 : sIleGlyLysIleProAlaProAspAlaAsnIleSerPheIleProThrMetPhePro : 178 ... :!: ! ! ! ! !||| !!!.!! ! !! ! .!!||| eSerAsnAlaLeuGluAsnLysLysAsnAsn---ThrIleArgAlaLeuProIlePro 295121 : ttcaaacgctTTGGAGAACAAGAAGAATAAT---ACGATTCGTGCGTTACCAATTCCT : 295174 179 : PheProLysTyrIleAlaAspValArgTyrSerProIleAsnGluIleValPhePheP : 198 ! !:!!! .!!!.!|||!.! !! !||||||! ! !!||||||:!! ! GlyTyrGluLeuPheValAspAlaTyrSerSerProThrTyrGluIleIleArgThrH 295175 : GGCTACGAGTTATTCGTAGACGCTTATTCCAGTCCTACCTACGAGATCATAAGAACTC : 295234 199 : heGlnPheMetCysGlyPheLeuValHis : 207 !! |||:!:! !..!|||!!!|||:!! isLeuPheValTyrSerPhePheValAsn 295235 : ATCTCTTTGTTTACTCGTTCTTCGTCAAC : 295263 vulgar: AmOr21 5 207 . KQ414889.1 294657 295263 + 217 M 27 81 G 0 3 M 137 411 G 1 0 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294658 295263 217 + . gene_id 21 ; sequence AmOr21 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294658 295263 . + . KQ414889.1 exonerate:protein2genome:local exon 294658 295263 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294658 295263 217 + . alignment_id 21 ; Query AmOr21 ; Align 294658 6 81 ; Align 294742 33 411 ; Align 295153 171 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 215 Query range: 298 -> 388 Target range: 206050 -> 206401 299 : GluTrpGluSerAsnHisLeuThrGluValValThrTyrValIleIleLeuIleThrI : 318 |||||||||!:!|||:!! !|||! !|||:!!..!|||:!!! :!:! !|||:!! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 319 : leIlePheAsnIlePheValPheCysTyrIleGlyGluLeuLeuAlaAspGln >>> : 336 !! !||| !:!!|||:!!.!.||||||||||||:!!|||||| !|||||| ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 337 : > Target Intron 1 >>>> SerArgLysIleGlyGluValThrTyrMetIleG : 347 81 bp !:!!.! :!:||| !..!:!!! !! !:!:. ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 348 : luTrpTyrArgLeuSerGlyLysLysLysLeuCysCysValLeuIleIleAlaMetSe : 366 !.|||||||||||| !!..!!:! ! !! !! ! :!!||||||||||||||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 367 : rAsnSerSerMetLysLeuThrAlaGlyAsnLeuIleGluLeuSerMetSerThrPhe : 385 ||||! ! !!!!:|||||||||||||||!!.:!!.!!|||:!!|||:!::!!!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 386 : SerAspVal : 388 !!!|||||| ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: AmOr21 298 388 . KQ414889.1 206050 206401 + 215 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 215 + . gene_id 22 ; sequence AmOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 215 + . alignment_id 22 ; Query AmOr21 ; Align 206051 299 111 ; Align 206243 336 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 210 Query range: 298 -> 388 Target range: 277371 -> 277713 299 : GluTrpGluSerAsnHisLeuThrGluValValThrTyrValIleIleLeuIleThrI : 318 ||||||.....!!:! !!:!! ! !:!!..!|||:!! !!!!:|||||||||:!!! GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 319 : leIlePheAsnIlePheValPheCysTyrIleGlyGluLeuLeuAlaAspGln >>> : 336 !: ||||||||||||..! ! |||||||||||||||:!!|||.!!!!:||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 337 : > Target Intron 1 >>>> SerArgLysIleGlyGluValThrTyrMetIleG : 347 72 bp !!!!:!|||:!!|||||||||..!||||||! . ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 348 : luTrpTyrArgLeuSerGlyLysLysLysLeuCysCysValLeuIleIleAlaMetSe : 366 !.|||||| !||| !!! !||| ! ! ||| !! :!!|||||||||:!!! || snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 367 : rAsnSerSerMetLysLeuThrAlaGlyAsnLeuIleGluLeuSerMetSerThrPhe : 385 |!:! :::|||:::|||||||||...||||||::::::|||:!!! !|||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 386 : SerAspVal : 388 .!!|||||| GlyAspVal 277703 : GGCGATGTA : 277713 vulgar: AmOr21 298 388 . KQ414889.1 277371 277713 + 210 M 37 111 5 0 2 I 0 68 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277713 210 + . gene_id 23 ; sequence AmOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277713 210 + . alignment_id 23 ; Query AmOr21 ; Align 277372 299 111 ; Align 277555 336 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 193 Query range: 8 -> 230 Target range: 194150 -> 194807 9 : AspTyrLysSerAsnValAsnLeuSerIleLysTyrSerArgArgIleSerLysMetI : 28 :!!||||||! !:!!..!.!.! !:!!:!!::! :!!!:! !:!! !! ! !| AsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProI 194151 : AATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGA : 194208 29 : leGlyLeuTrpProIlePheAspLysIleSerThrIleHisLysPheLeuArgMetLe : 47 |||||:!!||||||! |||...:!! !! !!!:! !!! !! !.!. leGlyIleTrpProArgGluAspSerLeuArg------AspArgValArgLeuPheAl 194209 : TCGGTATCTGGCCAAGGGAGGATTCTCTTCGC------GACAGAGTCCGACTGTTCGC : 194259 48 : uTyrAsnThrIleCysTyrCysLeuLeuMetPheMetIleValLeuGlyTrpMetTyr : 66 ! ! !.! !:!: !!:!..!|||:!! |||:!::!:|||! ! ! !!!:||| aGlnThrGlyValValPheAlaLeuMetCysPheLeuLeuValProHisValIleTyr 194260 : TCAAACTGGCGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTAC : 194316 67 : IleAlaPheGluValLysAsnIleTyrAspGlyLeuLysPheValSerLeuMetSerP : 86 ! ! !|||!!: !:!!:!!:!: !:!!||| ! :!!:!! !... !| ThrTyrPheAspCysGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValP 194317 : ACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGT : 194376 87 : heCysMetLeuSerIleThrLysTyrHisLeuIleAsnIleHisLysAspAspValAr : 105 || !!:!!|||:!!|||! !|||!:! !!!:! !:!::!!!:! ! !!::!!|| heSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnArgLysGluIleAr 194377 : TCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAG : 194433 106 : gGluCysValLysArgIleGluTrpAspTrpLysAsnIleSerTyrSerGluAspArg : 124 | |||:!! !..!!!:||| !.!.!::!:!:!!:!:..!! !..!||||||||| gPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCysGluGluAspArg 194434 : ATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGA : 194490 125 : GluIleMetLeuMetAsnAlaAsnPheGlyLysArgLeuIleIleValThrThrThrV : 144 :!!:!:||| !! !|||!!..!!|||::! !!!!! !! !:!! ! ! !: GlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyL 194491 : CAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGAC : 194550 145 : alThrTyrSerGlyPheValPhePheTyrIleAlaIleProMetLysIleGlyLysIl : 163 !!:!!|||.!!||| !:!! !:!:!!||| !:!!|||:!!! ! ! !!:!|| euSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluArgIl 194551 : TTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGAT : 194607 164 : eProAlaProAspAlaAsnIleSerPheIleProThrMetPheProPheProLysTyr : 182 | ! ! !||| |||! !!!! |||||| ! !:! ! ! ! ! ! eValLysGluAsp---AsnSerThrGlnIleProLeuProTyrLeuSerAsnTyrVal 194608 : TGTCAAGGAGGAT---AACAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTT : 194661 183 : IleAlaAspValArgTyrSerProIleAsnGluIleValPhePhePheGlnPheMetC : 202 .!! !! :!!..! !!||||||||| !!||||||..!||| !!! |||.!.:!! PhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerGlnIleLeuI 194662 : TTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGA : 194721 203 : ysGlyPheLeuValHisGlyValThrSerSerAlaCysSerLeuAlaAlaIlePheTh : 221 !.!! !:!!:!! ..!..!!.!!!!.!! !! !||||||!.!|||! !.!!! leSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIl 194722 : TTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTAT : 194778 222 : rValHisAlaCysGlyGlnIleGlnVal : 230 !:!!|||..!|||||| !.!!:!!||| eMetHisCysCysGlyLeuPheGluVal 194779 : TATGCATTGCTGTGGCTTGTTCGAAGTG : 194807 vulgar: AmOr21 8 230 . KQ414889.1 194150 194807 + 193 M 30 90 G 2 0 M 127 381 G 1 0 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194151 194807 193 + . gene_id 24 ; sequence AmOr21 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194151 194807 . + . KQ414889.1 exonerate:protein2genome:local exon 194151 194807 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 194151 194807 193 + . alignment_id 24 ; Query AmOr21 ; Align 194151 9 90 ; Align 194241 41 381 ; Align 194622 169 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 181 Query range: 298 -> 399 Target range: 305100 -> 305816 299 : GluTrpGluSerAsnHisLeuThrGluValValThrTyrValIleIleLeuIleThrI : 318 !!:|||||||||!:!:!! !..!...:!!..!||||||..!:!::!!||||||:!!: AspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValLeuLeuIleSerV 305101 : GATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGTTACTGATATCTG : 305158 319 : leIlePheAsnIlePheValPheCysTyrIleGlyGluLeuLeuAlaAspGlnSer{A : 337 !!! !||||||||||||:!!!!.|||||||||||||||:!!||| !!!::!! !{! alThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMetGluLysVal{S 305159 : TAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTATGGAAAAGGTG{a : 305215 338 : r} >>>> Target Intron 1 >>>> {g}LysIleGlyGluValThrTyrMet : 345 !} 413 bp {!}!..:!!||| ! ! !!:!||| e}-+ ++{r}SerValGlyLeuSerCysPheMet 305216 : g}tt.........................ag{T}AGCGTTGGATTATCCTGTTTTATG : 305652 346 : IleGluTrpTyrArgLeuSerGlyLysLysLysLeuCysCysValLeuIleIleAlaM : 365 |||...||||||!.!||| !! !|||! !! !! ! !! !:!!||||||||||||| IleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleLeuIleIleAlaM 305653 : ATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTTTAATCATTGCCA : 305712 366 : etSerAsnSerSerMetLysLeuThrAlaGlyAsnLeuIleGluLeuSerMetSerTh : 384 |||||!:!!:! !! |||:!!!:!||||||!!.:!!:!!!!:||||||:!:||||| etSerSerAsnProAlaLysIleSerAlaGlyLysValValAspLeuSerLeuSerTh 305713 : TGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTATCTTTATCCAC : 305769 385 : rPheSerAspValValLysThrSerPheAlaPheLeuAsnValLeu : 399 ||||.!!:!!||| ! ! !...:::::: :::::::::::: rPheGlyAsnValSerTyrTyrGlnTyrSerAsnIleSerIleVal 305770 : ATTTGGAAACGTGAGTTACTATcaatattccaatatttcaattgtt : 305816 vulgar: AmOr21 298 399 . KQ414889.1 305100 305816 + 181 M 38 114 S 0 2 5 0 2 I 0 409 3 0 2 S 1 1 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305101 305816 181 + . gene_id 25 ; sequence AmOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305101 305216 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305216 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305217 305218 . + . intron_id 1 ; splice_site "tt" KQ414889.1 exonerate:protein2genome:local intron 305217 305629 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305628 305629 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305630 305816 . + . KQ414889.1 exonerate:protein2genome:local exon 305630 305816 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305101 305816 181 + . alignment_id 25 ; Query AmOr21 ; Align 305101 299 114 ; Align 305631 338 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 298 -> 388 Target range: 272836 -> 273176 299 : GluTrpGluSerAsnHisLeuThrGluValValThrTyrValIleIleLeuIleThrI : 318 |||||| ..!:!! !!!!! !...:!!..!|||||| !!!!:|||||||||:!!! GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 319 : leIlePheAsnIlePheValPheCysTyrIleGlyGlu >>>> Target Intron : 331 !: ||||||||||||::: ||||||||||||||| 70 bp etThrPheAsnIlePheIleValCysTyrIleGlyGlu-+ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAat.................. : 272935 332 : 1 >>>> LeuLeuAlaAspGlnSerArgLysIleGlyGluValThrTyrMetIleG : 347 ::: ||| :::|||||||||||||||..!||||||! . ++LysAsnSer***GlnCysLysLysIleGlyGluValValTyrMetThrA 272936 : .......agaaaaattcttaacagtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 348 : luTrpTyrArgLeuSerGlyLysLysLysLeuCysCysValLeuIleIleAlaMetSe : 366 !.|||||| !||| !!|||||| ! ! ||| ! :!!|||||||||:!!! !! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 367 : rAsnSerSerMetLysLeuThrAlaGlyAsnLeuIleGluLeuSerMetSerThrPhe : 385 !!:! ! !!!:|||:!!|||||||||!..:!!:!! :!!|||:!!! !|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 386 : SerAspVal : 388 .!!|||||| GlyAspVal 273166 : GGCGATGTA : 273176 vulgar: AmOr21 298 388 . KQ414889.1 272836 273176 + 180 M 32 96 5 0 2 I 0 66 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273176 180 + . gene_id 26 ; sequence AmOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272932 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272932 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272933 272934 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 272933 273002 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273001 273002 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273003 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 273003 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273176 180 + . alignment_id 26 ; Query AmOr21 ; Align 272837 299 96 ; Align 273003 331 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 261 -> 298 Target range: 224128 -> 224239 262 : ArgIleLeuLysPheLeuSerLeuIleGluLysIleLeuGlnGlnValSerTyrMetG : 281 !:! !! !!:!||||||!!!! !! !|||||| !|||||||||||||||!:!:!!| LysCysCysArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValG 224129 : AAATGTTGCAGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGG : 224186 282 : luPheLeuGluCysThrValAsnValCysLeuLeuGlyTyrCysAlaIleIle : 298 ||||||||! |||! !:!!|||:!!|||||||||||||||! !!.!|||:!: luPheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleVal 224187 : AATTTCTAGGCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTG : 224239 vulgar: AmOr21 261 298 . KQ414889.1 224128 224239 + 110 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224129 224239 110 + . gene_id 27 ; sequence AmOr21 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224129 224239 . + . KQ414889.1 exonerate:protein2genome:local exon 224129 224239 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224129 224239 110 + . alignment_id 27 ; Query AmOr21 ; Align 224129 262 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 298 -> 335 Target range: 291368 -> 291479 299 : GluTrpGluSerAsnHisLeuThrGluValValThrTyrValIleIleLeuIleThrI : 318 ||||||||||||!:! !!! !! !! !:!!:!!|||||||||! !:!!|||! !:!!. GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 319 : leIlePheAsnIlePheValPheCysTyrIleGlyGluLeuLeuAlaAspGln : 335 !!! !|||||||||.!.:!!|||||||||:!!|||||||||||| !! ||| heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAG : 291479 vulgar: AmOr21 298 335 . KQ414889.1 291368 291479 + 110 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 291479 110 + . gene_id 28 ; sequence AmOr21 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 291479 110 + . alignment_id 28 ; Query AmOr21 ; Align 291369 299 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 334 -> 388 Target range: 283276 -> 283438 335 : GlnSerArgLysIleGlyGluValThrTyrMetIleGluTrpTyrArgLeuSerGlyL : 354 |||!!!!:!|||:!!|||||||||..!||||||! .!.! !!:! !||| !!! !| GlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProAspL 283277 : CAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCGACA : 283334 355 : ysLysLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerMetLysLeuTh : 373 || ! ! ||| !! :!!|||||||||:!!! |||!:! :::|||:::|| ysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIleTh 283335 : AAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaattac : 283391 374 : rAlaGlyAsnLeuIleGluLeuSerMetSerThrPheSerAspVal : 388 ||||......||||||:::::!||| !! !||||||..!|||||| rAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspVal 283392 : cgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTA : 283438 vulgar: AmOr21 334 388 . KQ414889.1 283276 283438 + 105 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283277 283438 105 + . gene_id 29 ; sequence AmOr21 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283277 283438 . + . KQ414889.1 exonerate:protein2genome:local exon 283277 283438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283277 283438 105 + . alignment_id 29 ; Query AmOr21 ; Align 283277 335 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 334 -> 397 Target range: 292389 -> 292578 335 : GlnSerArgLysIleGlyGluValThrTyrMetIleGluTrpTyrArgLeuSerGlyL : 354 |||.!!!!!:!!|||!.!.!.!.!:!!||| ! !|||||||||!.!||| !! !!: GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 355 : ysLysLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerMetLysLeuTh : 373 :!||| ! ! ! !||||||:!::!!|||!!:!!!!!. ! !!!!:|||||||| rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 374 : rAlaGlyAsnLeuIleGluLeuSerMetSerThrPheSerAspValValLysThrSer : 392 |||||||!!.:!!.!!! ||||||:!!!:!||||||.!!! !||| !:!!:!!!.! rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSerLys 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCAAAA : 292561 393 : PheAlaPheLeuAsn : 397 .!.!.!!!.:!!:!! LeuValLeuIleHis 292562 : CTAGTCTTGATACAC : 292578 vulgar: AmOr21 334 397 . KQ414889.1 292389 292578 + 105 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 292578 105 + . gene_id 30 ; sequence AmOr21 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292390 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 292578 105 + . alignment_id 30 ; Query AmOr21 ; Align 292390 335 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1280 Query range: 2 -> 403 Target range: 226882 -> 230518 3 : AsnGlnGlnValValIleThrGlnAspAspTyrLysArgLysThrAsnLeuSerIleG : 22 |||! ! !:!! |||:!!:!!||||||:!!..! ! !||||||||||||| AsnLeuAlaSerLeuAlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleG 226883 : AACCTCGCGTCTCTCGCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATAC : 226940 23 : lnTrpAsnArgTrpLeuLeuThrProIleGlyAlaTrpProAsnLeuArgLys<->Se : 40 ||! !|||||||||||||||! !|||:!!||| !||||||:::! !|||||| || lnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgLysSerSe 226941 : AGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTC : 226997 41 : rArgIleGlyLysCysTyrSerLeuLeuIleSerIleIleCysTyrSerLeuIleGly : 59 ||||||||||!:!|||!:!|||! !|||!!:.!!.!!:!!||||||:!!|||!!:.!! rArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSer 226998 : TCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGC : 227054 60 : PheMetLeuValSerCysSerIlePheLeuMetValGluIleAsnAsnIleTyrAsnL : 79 ||| !||||||||| !!.!!:!:!:!:!!:!::!!|||:!:!!...! !||||||! PheGluLeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnT 227055 : TTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACA : 227114 80 : ysLeuLysMetValGlyProLeuSerPhePheValMetThrIleMetLysTyrTyrPh : 98 !|||||||||:!!||||||:!!|||||||||!.!|||:!!:!!:!:||||||! !.! hrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMe 227115 : CGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCAT : 227171 99 : eLeuLeuPheHisGluAsnAspIleArgGluGlyIleGluArgIleGluTrpAspTrp : 117 .||| !|||||||||:!!||||||! !||| !!:!!|||||||||:!!||||||||| tLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrp 227172 : GTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGG : 227228 118 : LysAsnValLysHisGlnGluAspArgAsnIleMetIleThrTyrAlaAsnTyrGlyA : 137 ||||||:!!!:!:!!! !||||||||||||:!:|||:!:||||||||| !!||||||| LysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyA 227229 : AAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAA : 227288 138 : rgLysLeuAlaPheIleCysPhePhePheMetLeuCysAlaPheIlePheTyrPheLe : 156 |||||||| ! !|||||| ||||||:!:!!! :::|||:::|||:::::::! rgLysLeuIleThrIleCysThrPhePheValPheSerSerPheValPhePheTyrIl 227289 : GAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacAT : 227345 157 : uIleGlnProPheGlyGlyGlyLysIleVal<-><->AspGlyAsnLeuThrPheIle : 173 !:!! !|||.!!..!!.!|||!..:!!!.! |||||||||! !!:!!:!||| eValValProIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIle 227346 : CGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATT : 227402 174 : GlnLeuProPheProIleSerIleLeuIleAlaAspValArgAspSerProTyrAsnG : 193 |||:!!|||||||||.!! !!! !:!!||||||||||||||| !!||||||!:!|||| GlnMetProPheProPheProLysIleIleAlaAspValArgTyrSerProPheAsnG 227403 : CAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACG : 227462 194 : luIleMetLeuSerIleGlnIleLeuThrGlyIleValMetAsnAlaIleArgSerAl : 212 |||||.!.!!!|||:!!|||.!!:!!||||||||||||:!!:!!!.!:!!! !||||| luIlePhePheSerValGlnPheValThrGlyIleValLeuHisGlyValThrSerAl 227463 : AGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGC : 227519 213 : aIleCysSerValAlaAlaValPheAlaIleHisAlaCysGlyGlnMetGlnValLeu : 231 | !||||||:!!||||||:!!.!!|||:!!||||||||||||||||||:!!|||||| aAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeu 227520 : TGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTG : 227576 232 : MetAsnTrpLeuAsnHisLeuValGluGlyArgSerAspMetSerLysLysIleAspA : 251 :!!::!||||||...||||||:!!!!:||||||:!!||||||||||||! !:!:|||| ValSerTrpLeuGlyHisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAspA 227577 : GTGTCCTGGCTGGGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGATG : 227636 252 : spArgIleAlaAsnIleValIleGlnHisAspArgIleLeu{Ly} >>>> Target : 265 |||||||||||!:!||||||! !!!.|||! !|||||||||{!!} 3 spArgIleAlaSerIleValThrHisHisValArgIleLeu{As}++ 227637 : ATAGAATCGCTAGCATCGTCACTCACCACGTTCGAATATTG{AA}gt........... : 227682 266 : Intron 1 >>>> {s}PheLeuAlaLeuThrGluArgAlaLeuGlnGlnIleSer : 278 96 bp {.}||||||||||||! !|||!:!.!!:!!|||||||||:!! ++{n}PheLeuAlaLeuIleGluLysThrMetGlnGlnIleAla 227683 : ..............ag{C}TTTCTGGCCCTCATAGAGAAAACCATGCAGCAAATAGCT : 228113 279 : PheValGluPheLeuGlyCysThrAlaAsnMetCysLeuLeuGlyTyrTyrLeuIleV : 298 |||||||||||||||||||||||| !! !:!!||||||:!!! !||||||:!!|||. PheValGluPheLeuGlyCysThrIleIleLeuCysLeuIleGluTyrTyrIleIleT 228114 : TTCGTAGAATTTTTAGGGTGTACAATAATTCTGTGCCTCATCGAGTATTACATCATAA : 228173 299 : al >>>> Target Intron 2 >>>> GluTrpAsnProLysGluLeuIleVal : 307 .! 72 bp |||||||||||||||||||||! ! !! hr++ ++GluTrpAsnProLysGluLeuThrPhe 228174 : CGgt.........................agGAATGGAATCCGAAAGAGTTAACATTT : 228272 308 : SerPheThrTyrIleAlaIleIleAlaSerIleThrPheAsnIlePheIlePheCysT : 327 :!! ! |||||| !|||:!!:!! !|||.!!||||||||||||||||||||||||| AlaValThrTyrSerAlaLeuLeuLeuSerPheThrPheAsnIlePheIlePheCysT 228273 : GCTGTAACTTACTCAGCGTTACTTTTATCCTTTAccttcaatattttcatattttgtt : 228332 328 : yrIleGlyGluLeuValAlaGluGln >>>> Target Intron 3 >>>> Thr : 336 |||||||||||:!!|||||||||!!. 1889 bp ! yrIleGlyGluIleValAlaGluHis++ ++Cys 228333 : aTATAGGAGAAATTGTTGCCGAACACgt.........................agTGC : 230248 337 : GluLysValGlyGluValAlaTyrMetIleGluTrpTyrArgIleArgGlyLysLysL : 356 ..!|||||||||||| !:!!|||||||||||||||||||||:!!! !|||!!.|||| ArgLysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyAsnLysL 230249 : AGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAAACAAGA : 230308 357 : ysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleLysPheThrAlaGl : 375 |||||||||||:!!|||||||||||||||||||||!!!|||! |||||||||||||| ysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheThrAlaGl 230309 : AGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTACAGCAGG : 230365 376 : yAsnMetValGluLeuSerIleTyrThrPheSerAsp >>>> Target Intron : 388 |||||||||||||||||||:!! !!|||||||||||| 67 bp yAsnMetValGluLeuSerValAsnThrPheSerAsp++ 230366 : AAACATGGTTGAATTATCCGTAAACACTTTCAGCGACgt................... : 230406 389 : 4 >>>> ValValLysThrSerValAlaPheLeuAsnMetLeuArgAlaLeuThr : 403 |||||||||||||||:!!!.!||||||||||||||||||.!!|||||| ++ValValLysThrSerMetGlyPheLeuAsnMetLeuArgThrLeuThr 230407 : ......agGTCGTTAAAACGTCCATGGGTTTCTTAAACATGCTACGAACACTGACG : 230518 vulgar: AmOr29 2 403 . KQ414889.1 226882 230518 + 1280 M 37 111 G 0 3 M 127 381 G 0 6 M 98 294 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226883 230518 1280 + . gene_id 1 ; sequence AmOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226883 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226883 227679 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230403 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230403 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 230404 230405 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 230404 230470 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 230469 230470 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230471 230518 . + . KQ414889.1 exonerate:protein2genome:local exon 230471 230518 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226883 230518 1280 + . alignment_id 1 ; Query AmOr29 ; Align 226883 3 111 ; Align 226997 40 381 ; Align 227384 167 294 ; Align 228077 266 99 ; Align 228248 299 111 ; Align 230248 336 156 ; Align 230471 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1143 Query range: 1 -> 403 Target range: 217123 -> 219803 2 : LysAsnGlnGlnValValIleThrGlnAspAspTyrLysArgLysThrAsnLeuSerI : 21 !!.!!.:!!||| ! !! !|||.!. !!!!:|||::::::... |||||||||| AsnLysGluGlnSerProArgThrAspTyrGluTyrGluLysAsnIleAsnLeuSerI 217124 : AACAAGGAACAATCCCCCAGAACCGACTACGAgtacgagaaaaatataaatctcaGTA : 217181 22 : leGlnTrpAsnArgTrpLeuLeuThrProIleGlyAlaTrpProAsnLeuArg<->Ly : 39 |||||||||||||||||||||||! !|||!!:||| !|||||||||! !||| ! leGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnSerArgThrTh 217182 : TCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACTCACGTACCAC : 217238 40 : sSerArgIleGlyLysCysTyrSerLeuLeuIleSerIleIleCysTyrSerLeuIle : 58 !!!||| ! !!||| ! !! ! !||||||!:! !:!!||||||.!!|||||| rThrArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIle 217239 : CACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTACGGTTTGATA : 217295 59 : GlyPheMetLeuValSerCysSerIlePheLeuMetValGluIleAsnAsnIleTyrA : 78 .!!|||:!:!!!||| !!||||||!!:!:!:!!.!.:!!|||:!!.!.:!!:!!|||: SerPheLeuPheValProCysSerMetTyrValPheLeuGluValGluAspLeuTyrA 217296 : AGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAGATCTCTACG : 217355 79 : snLysLeuLysMetValGlyProLeuSerPhePheValMetThrIleMetLysTyrTy : 97 !!|||||||||:!! !!|||||||||! !|||! !||||||.!!.!!:!:|||||||| spLysLeuLysLeuPheGlyProLeuIlePheCysValMetAlaPheValLysTyrTy 217356 : ACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTA : 217412 98 : rPheLeuLeuPheHisGluAsnAspIleArgGluGlyIleGluArgIleGluTrpAsp : 116 |! !|||:!! !!|||:!! |||||||||||| !!:!:..!||||||||| !!||| rSerLeuIleValHisLysAlaAspIleArgGluCysValArgArgIleGluArgAsp 217413 : CTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGAC : 217469 117 : TrpLysAsnValLysHisGlnGluAspArgAsnIleMetIleThrTyrAlaAsnTyrG : 136 |||!:!||||||!:! !:!!:!!||||||.!. ||||||..! !!||||||!:!| TrpArgAsnValArgCysGluLysAspArgGluAlaMetIleValAsnAlaAsnPheG 217470 : TGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTG : 217529 137 : lyArgLysLeuAlaPheIleCysPhePhePheMetLeuCysAlaPheIlePheTyrPh : 155 |||||||||||!.!.!.:!!||| !|||||||||! ! !!...|||:::||||||:: lyArgLysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheValPheTyrTy 217530 : GCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcgttttttatta : 217586 156 : eLeuIleGlnProPheGlyGlyGlyLysIleVal<-><->AspGlyAsnLeuThrPhe : 172 :::! ! !|||.!!.!!! !|||!:!|||:!! :!!||||||||||||||| rIleAlaIleProIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuThrPhe 217587 : catCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTT : 217643 173 : IleGlnLeuProPheProIleSerIleLeuIleAlaAspValArgAspSerProTyrA : 192 |||! !||| !||||||.!!!!!! ! !||| !|||..!||| !!!!!||| | IleProLeuValPheProPheThrLysTyrIleIleAspThrArgTyrThrProThrA 217644 : ATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCTACGA : 217703 193 : snGluIleMetLeuSerIleGlnIleLeuThrGlyIleValMetAsnAlaIleArgSe : 211 ||||||||:!!!!!! !:!!|||:!::!!.!!||| !:!!|||:!!!.!|||! !|| snGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSe 217704 : ACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCACGTC : 217760 212 : rAlaIleCysSerValAlaAlaValPheAlaIleHisAlaCysGlyGlnMetGlnVal : 230 |||| !||||||:!!||||||!.!||||||:!!|||||||||||||||!!::!!||| rAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGluVal 217761 : GGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTG : 217817 231 : LeuMetAsnTrpLeuAsnHisLeuValGluGlyArgSerAspMetSerLysLysIleA : 250 |||||||||||||||.!.||||||:!!!!:||||||:!!||||||||| ! ! :!:| LeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgAlaAspMetSerAspThrValA 217818 : TTGATGAACTGGCTGCAACATTTAATCGACGGTAGAGCGGATATGAGCGATACTGTGG : 217877 251 : spAspArgIleAlaAsnIleValIleGlnHisAspArgIleLeu{Ly} >>>> Tar : 265 ||! !|||||||||!:!||||||! !||||||! !|||||||||{||} spGlyArgIleAlaSerIleValSerGlnHisValArgIleLeu{Ly}++ 217878 : ATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTA{AA}gt........ : 217926 266 : get Intron 1 >>>> {s}PheLeuAlaLeuThrGluArgAlaLeuGlnGlnIle : 277 1229 bp {|}||||||.!!||||||||||||.!!|||||||||||| ++{s}PheLeuThrLeuThrGluArgThrLeuGlnGlnIle 217927 : .................ag{a}tttttgaCGCTCACAGAGAGAACCCTCCAGCAAATC : 219187 278 : SerPheValGluPheLeuGlyCysThrAlaAsnMetCysLeuLeuGlyTyrTyrLeuI : 297 ||||||!.!|||||||||||||||||| !:!!!!:||||||:!!|||||||||:!!| SerPheAlaGluPheLeuGlyCysThrMetAspIleCysLeuValGlyTyrTyrIleI 219188 : TCTTTCGCTGAATTTCTAGGATGCACCATGGACATATGTCTCGTTGGATATTACATTA : 219247 298 : leVal >>>> Target Intron 2 >>>> GluTrpAsnProLysGluLeuIle : 306 ||||| 76 bp ||||||!!. !!!!.!!::!!! leVal++ ++GluTrpLysSerAsnAspValThr 219248 : TCGTGgt.........................agGAATGGAAATCGAATGATGTAACG : 219350 307 : ValSerPheThrTyrIleAlaIleIleAlaSerIleThrPheAsnIlePheIlePheC : 326 !:!! ! ||||||||| !:!!:!! !|||:!:|||||||||||||||||||||| SerAlaValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheC 219351 : AGTGCAGTGACATACATCATTCTACTTATATCCCTcactttcaacattttcatatttt : 219410 327 : ysTyrIleGlyGluLeuValAlaGluGln >>>> Target Intron 3 >>>> : 336 ||||||||||||||:!!|||||||||||| 73 bp ysTyrIleGlyGluIleValAlaGluGln++ ++ 219411 : gctaCATAGGAGAGATCGTTGCTGAACAggt.........................ag : 219511 337 : ThrGluLysValGlyGluValAlaTyrMetIleGluTrpTyrArgIleArgGlyLysL : 355 ...|||:::||||||::::!!|||||||||||||||||||||:!:! !||||||| CysArgLysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysL 219512 : TGtaggaaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGA : 219570 356 : ysLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleLysPheThrAl : 374 ||||||||!! !!||||||! !|||||||||||||||||||||||||||!!.||||| ysLysLeuTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAl 219571 : AAAAGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGC : 219627 375 : aGlyAsnMetValGluLeuSerIleTyrThrPheSerAsp >>>> Target Intr : 388 ||||||||||||||||||||||||| !||||||!!!||| 87 bp aGlyAsnMetValGluLeuSerIleSerThrPheThrAsp++ 219628 : CGGAAATATGGTCGAATTGTCTATCAGCACTTTTACCGACgt................ : 219671 389 : on 4 >>>> ValValLysThrSerValAlaPheLeuAsnMetLeuArgAlaLeuTh : 403 ||||||||||||:!!|||.!!|||||||||:!:||||||.!!||||| ++ValValLysThrAlaValThrPheLeuAsnValLeuArgThrLeuTh 219672 : .........agGTCGTTAAGACTGCAGTCACGTTTCTGAATGTACTACGAACATTGAC : 219801 404 : r : 403 | r 219802 : T : 219803 vulgar: AmOr29 1 403 . KQ414889.1 217123 219803 + 1143 M 37 111 G 0 3 M 128 384 G 0 6 M 98 294 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 37 111 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 83 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217124 219803 1143 + . gene_id 2 ; sequence AmOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217124 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217124 217923 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219668 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219668 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219669 219670 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219669 219755 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 219754 219755 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219756 219803 . + . KQ414889.1 exonerate:protein2genome:local exon 219756 219803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217124 219803 1143 + . alignment_id 2 ; Query AmOr29 ; Align 217124 2 111 ; Align 217238 39 384 ; Align 217628 167 294 ; Align 219154 266 99 ; Align 219329 299 111 ; Align 219513 336 156 ; Align 219756 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1127 Query range: 1 -> 403 Target range: 212821 -> 215136 2 : LysAsnGlnGlnValValIleThrGlnAspAspTyrLysArgLysThrAsnLeuSerI : 21 |||:!!:!!:!!:!! !:!! !.!. ! !|||:!!!:!:::...|||||||||| LysAspGluLysLeuGlnValGluAspCysThrTyrGluLysArgValAsnLeuSerI 212822 : AAAGATGAGAAATTGCAGGTCGAAGACTGTACCTACGAGAAACGtgtaaatttaagta : 212879 22 : leGlnTrpAsnArgTrpLeuLeuThrProIleGlyAlaTrpProAsnLeuArg<->Ly : 39 || !||||||||||||||||||! !|||! ||| !||||||:!! ! ! leProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspLysSerTyrVa 212880 : tacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCTACGT : 212936 40 : sSerArgIleGlyLysCysTyrSerLeuLeuIleSerIleIleCysTyrSerLeuIle : 58 |||! !|||! !||| ! !:!!! !|||:!!!:!! !:!!||||||.!!|||||| lSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLeuIle 212937 : TTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATC : 212993 59 : GlyPheMetLeuValSerCysSerIlePheLeuMetValGluIleAsnAsnIleTyrA : 78 |||!:!:!::!!:!! !!||||||:!:!:!:!!.!.:!!!!::!!...||||||:::. GlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGluAsnIlePheL 212994 : GGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatatattta : 213053 79 : snLysLeuLysMetValGlyProLeuSerPhePheValMetThrIleMetLysTyrTy : 97 ..::::!!:!!:!! !!||| !!!!:!!|||! !||| .!!:!: !||||||:! ysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHi 213054 : aagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCA : 213110 98 : rPheLeuLeuPheHisGluAsnAspIleArgGluGlyIleGluArgIleGluTrpAsp : 116 !! |||:!!.!!|||! :!!||||||||| ! !!:!!|||!.!!!::!!!::||| sSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMetLysTyrAsp 213111 : TTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATATGAC : 213167 117 : TrpLysAsnValLysHisGlnGluAspArgAsnIleMetIleThrTyrAlaAsnTyrG : 136 |||||||||:!!! !|||:!!||||||!:!.!.|||||| ! !!|||!:!!:!| TrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSerPheG 213168 : TGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTG : 213227 137 : lyArgLysLeuAlaPheIleCysPhePhePheMetLeuCysAlaPheIlePheTyrPh : 155 ||!:!!:!:!!!.! |||||| !|||||||||! ! !.!|||! |||||||| lyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheThrPheTyrPh 213228 : GAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTT : 213284 156 : eLeuIleGlnProPheGlyGlyGlyLysIleVal<-><->AspGlyAsnLeuThrPhe : 172 ||||:!! !|||.!!.!!!.!! !|||!!:||| ||| !|||:!!|||||| eLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAsnValThrPhe 213285 : CCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTC : 213341 173 : IleGlnLeuProPheProIleSerIleLeuIleAlaAspValArgAspSerProTyrA : 192 ! !|||:!! ! !!|||:!!|||! !!!!|||!.!||||||||| !!|||||| | ArgGlnMetValValProValSerArgPheIleValAspValArgTyrSerProValA 213342 : AGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGA : 213401 193 : snGluIleMetLeuSerIleGlnIleLeuThrGlyIleValMetAsnAlaIleArgSe : 211 ||||||||.!.!!!! !|||||||||:!!.!!|||:!!:!!!!::!!|||||| ! snGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaVa 213402 : ACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGT : 213458 212 : rAlaIleCysSerValAlaAlaValPheAlaIleHisAlaCysGlyGlnMetGlnVal : 230 !!.! !||||||:!!|||||||||||||||:!!|||||||||||||||||| :!! lValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIle 213459 : GGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATT : 213515 231 : LeuMetAsnTrpLeuAsnHisLeuValGluGlyArgSerAspMetSerLysLysIleA : 250 ||||||!:!||||||.!.||||||:!!!!:||||||..!||||||||||||!!.:!:| LeuMetSerTrpLeuGluHisLeuIleAspGlyArgGluAspMetSerLysAsnValA 213516 : TTGATGAGCTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGCAAGAATGTGG : 213575 251 : spAspArgIleAlaAsnIleValIleGlnHisAspArgIleLeu{Ly} >>>> Tar : 265 |||||||||||||| !||||||! !||||||! |||||||||{||} spAspArgIleAlaValIleValAsnGlnHisValArgIleLeu{Ly}++ 213576 : ACGACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTG{AA}gt........ : 213624 266 : get Intron 1 >>>> {s}PheLeuAlaLeuThrGluArgAlaLeuGlnGlnIle : 277 840 bp {|}||||||! !|||..!|||!:!||||||!:!|||:!! ++{s}PheLeuGluLeuValGluLysAlaLeuArgGlnVal 213625 : .................ag{A}TTCTTAGAGCTCGTGGAGAAAGCACTTCGGCAAGTA : 214496 278 : SerPheValGluPheLeuGlyCysThrAlaAsnMetCysLeuLeuGlyTyrTyrLeuI : 297 ||||||!.!|||!!.|||! !||||||!.!|||:!:||||||:!!|||||||||:!!| SerPheAlaGluLeuLeuValCysThrValAsnLeuCysLeuValGlyTyrTyrIleI 214497 : TCTTTCGCTGAATTATTAGTATGCACGGTGAATCTCTGTCTCGTTGGATATTACATAA : 214556 298 : leVal >>>> Target Intron 2 >>>> GluTrpAsnProLysGluLeuIle : 306 ||..! 68 bp ||||||||| !!!!..!.|||! ! leThr++ ++GluTrpAsnSerAsnAsnLeuThr 214557 : TAACGgt.........................aggAATGGAATTCGAACAATTTAACA : 214651 307 : ValSerPheThrTyrIleAlaIleIleAlaSerIleThrPheAsnIlePheIlePheC : 326 ..!!!! ! ||||||:!:!.!:!: ! !|||:::|||||||||||||||||||||| ThrThrValThrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheC 214652 : ACTACAGTAACTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatatttt : 214711 327 : ysTyrIleGlyGluLeuValAlaGluGln >>>> Target Intron 3 >>>> : 336 ||||||||||||||||||||:!!|||||| 123 bp ysTyrIleGlyGluLeuValSerGluGln++ ++ 214712 : gttaCATAGGCGAGCTTGTGTCTGAACAGgt.........................ag : 214862 337 : ThrGluLysValGlyGluValAlaTyrMetIleGluTrpTyrArgIleArgGlyLysL : 355 !:!!|||||||||||||||:!!|||||||||||||||||||||:!:! !|||!!.| CysLysLysValGlyGluValSerTyrMetIleGluTrpTyrArgLeuProGlyAsnL 214863 : TGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACCGATTGCCAGGTAACA : 214921 356 : ysLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleLysPheThrAl : 374 ||||||||||||||:!!||||||!!:||||||||||||||||||:!!||||||||||| ysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSerValLysPheThrAl 214922 : AAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATCCGTCAAATTCACAGC : 214978 375 : aGlyAsnMetValGluLeuSerIleTyrThrPheSerAsp >>>> Target Intr : 388 ||||||||||||||||||||||||| !|||||||||..! 69 bp aGlyAsnMetValGluLeuSerIleSerThrPheSerSer++ 214979 : TGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTgt................ : 215022 389 : on 4 >>>> ValValLysThrSerValAlaPheLeuAsnMetLeuArgAlaLeuTh : 403 ||||||::!||||||||||||||||||||| !||||||......:: ++ValValArgThrSerValAlaPheLeuAsnAlaLeuArgThrPheSe 215023 : .........agGTTGTTCGAACATCGGTTGCCTTCTTAAACGCGTTACgaacattttc : 215134 404 : r : 403 : r 215135 : a : 215136 vulgar: AmOr29 1 403 . KQ414889.1 212821 215136 + 1127 M 37 111 G 0 3 M 128 384 G 0 6 M 98 294 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 M 33 99 5 0 2 I 0 64 3 0 2 M 37 111 5 0 2 I 0 119 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212822 215136 1127 + . gene_id 3 ; sequence AmOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212822 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 212822 213621 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215019 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215019 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 215020 215021 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 215020 215088 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 215087 215088 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 215089 215136 . + . KQ414889.1 exonerate:protein2genome:local exon 215089 215136 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212822 215136 1127 + . alignment_id 3 ; Query AmOr29 ; Align 212822 2 111 ; Align 212936 39 384 ; Align 213326 167 294 ; Align 214463 266 99 ; Align 214630 299 111 ; Align 214864 336 156 ; Align 215089 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 941 Query range: 6 -> 403 Target range: 208176 -> 212081 7 : ValIleThrGlnAspAspTyrLysArgLysThrAsnLeuSerIleGlnTrpAsnArgT : 26 :!!.!! !.!. :!!||||||!.! ! !!:!!!!!:!:!!!:: !||| !| IlePheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValT 208177 : ATATTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGT : 208234 27 : rpLeuLeuThrProIleGlyAlaTrpPro<->AsnLeuArgLysSerArgIleGlyLy : 44 || !|||! ! !||||||:!!|||||| ::!:!! !:::||| !!:!!! !!! rpThrLeuLysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAs 208235 : GGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAA : 208291 45 : sCysTyrSerLeuLeuIleSerIleIleCysTyrSerLeuIleGlyPheMetLeuVal : 63 . !! ! !:!!|||:!!!:!:!!:!! !!:!!!!!|||:!!||||||!!::!!:!! nSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIle 208292 : CAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATA : 208348 64 : SerCysSerIlePheLeuMetValGluIleAsnAsnIleTyrAsnLysLeuLysMetV : 83 !! !.!!!!:||| !!!::!!! !:!!.!.:!!.!!|||:!!:!!||||||!!: ProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleC 208349 : CCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCT : 208408 84 : alGlyProLeuSerPhePheValMetThrIleMetLysTyrTyrPheLeuLeuPheHi : 102 !.!! !!||||||||||||:!!|||.!!.!!! !|||||| .!!:!! ! !!!. ysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValAr 208409 : GTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCG : 208465 103 : sGluAsnAspIleArgGluGlyIleGluArgIleGluTrpAspTrpLysAsnValLys : 121 !|||..!|||||||||:!! !!:!!||| !:!!||| ||||||!:!||||||:!! gGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGlu 208466 : CGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAG : 208522 122 : HisGlnGluAspArgAsnIleMetIleThrTyrAlaAsnTyrGlyArgLysLeuAlaP : 141 |||:!!|||||||||!!.||||||:!: ! !!|||!:!!:!!.!||||||||| ! HisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleV 208523 : CACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCG : 208582 142 : heIleCysPhePhePheMetLeuCysAlaPheIlePheTyrPheLeuIleGlnProPh : 160 ! |||||| !||||||! ! ! !.. |||||||||::::!! ! !|||.! alIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLe 208583 : TGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCT : 208639 161 : eGlyGlyGlyLysIleValAsp<-><->GlyAsnLeuThrPheIleGlnLeuProPhe : 177 ! ! !!! !|||:!!|||!!: ||||||||||||!:!! !::!||| !!:! uThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyr 208640 : CACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTAT : 208696 178 : ProIleSerIleLeuIleAlaAspValArgAspSerProTyrAsnGluIleMetLeuS : 197 |||:!! !!! !!!||| !||||||||| !!|||||| |||||||||.!.! !! ProValProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrT 208697 : CCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATA : 208756 198 : erIleGlnIleLeuThrGlyIleValMetAsnAlaIleArgSerAlaIleCysSerVa : 216 !!:!!|||:!:|||:!!|||.!!||| :!! !|||! ! !!.! !|||.!!:! hrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLe 208757 : CGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTT : 208813 217 : lAlaAlaValPheAlaIleHisAlaCysGlyGlnMetGlnValLeuMetAsnTrpLeu : 235 !||||||:!!.!!|||!!:|||||||||||||||:!!|||:!!||||||::!|||:!! uAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMet 208814 : GGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATG : 208870 236 : AsnHisLeuValGluGlyArgSerAspMetSerLysLysIleAspAspArgIleAlaA : 255 .!. ! ||||||!!:||||||..!||| !..!|||!!.:!:|||.!.|||:!:|||| GluLysLeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaA 208871 : GAGAAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTA : 208930 256 : snIleValIleGlnHisAspArgIleLeu{Ly} >>>> Target Intron 1 >> : 265 |||||||| ||||||! !|||:!::!!{!!} 1536 bp snIleValGluGlnHisValArgValIle{As}++ 208931 : ATATCGTGGAGCAGCATGTTCGAGTGATC{AA}gt....................... : 208964 266 : >> {s}PheLeuAlaLeuThrGluArgAlaLeuGlnGlnIleSerPheValGluPhe : 282 {.}|||:!!||||||||||||!.! !|||!!.:!!||||||!!.:!!|||.!. ++{n}PheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGluMet 208965 : ..ag{T}TTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAATG : 210547 283 : LeuGlyCysThrAlaAsnMetCysLeuLeuGlyTyrTyrLeuIleVal >>>> Tar : 299 :!!||||||||| !|||||||||!!!|||||||||||| !!!::!! ValGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210548 : GTGGGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt........ : 210600 300 : get Intron 2 >>>> GluTrpAsnProLysGluLeuIleValSerPheThrTyr : 311 66 bp ||||||:!! !!|||!!:! !||| !|||.!.|||||| ++GluTrpAspSerLysAspProIleSerSerLeuThrTyr 210601 : .................agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTAC : 210700 312 : IleAlaIleIleAlaSerIleThrPheAsnIlePheIlePheCysTyrIleGlyGluL : 331 |||!.!:!!:!!.!!|||:!!||||||||||||||||||||||||||||||||||||: IleValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluV 210701 : ATAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAG : 210760 332 : euValAlaGluGln >>>> Target Intron 3 >>>> ThrGluLysValGly : 340 !!:!!||||||||| 999 bp |||! !||||||||| alLeuAlaGluGln++ ++ThrValLysValGly 210761 : TGTTGGCTGAACAggt.........................agACAGTAAAAGTTGGA : 211786 341 : GluValAlaTyrMetIleGluTrpTyrArgIleArgGlyLysLysLysLeuCysCysV : 360 ||| !:!!|||||||||!!:|||||||||!!:! !||||||||| ||| ! GluLysSerTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValValP 211787 : GAAAAGTCTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTAC : 211846 361 : alLeuIleIleAlaMetSerAsnSerSerIleLysPheThrAlaGlyAsnMetValGl : 379 !|||!!:|||:!!||||||:!!|||!!!! !|||.!!||||||||||||:!::!!! roLeuMetIleSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleVa 211847 : CCTTGATGATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGT : 211903 380 : uLeuSerIleTyrThrPheSerAsp >>>> Target Intron 4 >>>> ValV : 389 ||||||||| !!:!|||.!!||| 104 bp |||: lLeuSerIleSerSerPheGlyAsp++ ++ValI 211904 : TCTTTCAATCAGTAGTTTCGGTGACgt.........................agGTTA : 212037 390 : alLysThrSerValAlaPheLeuAsnMetLeuArgAlaLeuThr : 403 !!||||||||||||.!!!:!|||||||||||||||.!!!!!||| leLysThrSerValThrTyrLeuAsnMetLeuArgThrPheThr 212038 : TCAAGACTTCGGTAACATACTTGAACATGCTACGAACATTCACA : 212081 vulgar: AmOr29 6 403 . KQ414889.1 208176 212081 + 941 M 29 87 G 0 3 M 132 396 G 0 6 M 97 291 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 995 3 0 2 M 52 156 5 0 2 I 0 100 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208177 212081 941 + . gene_id 4 ; sequence AmOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208177 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208177 208961 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211929 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 211930 211931 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 211930 212033 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 212032 212033 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 212034 212081 . + . KQ414889.1 exonerate:protein2genome:local exon 212034 212081 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208177 212081 941 + . alignment_id 4 ; Query AmOr29 ; Align 208177 7 87 ; Align 208267 36 396 ; Align 208669 168 291 ; Align 210499 266 99 ; Align 210664 299 111 ; Align 211774 336 156 ; Align 212034 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 734 Query range: 11 -> 267 Target range: 221357 -> 222134 12 : AspTyrLysArgLysThrAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuThrProI : 31 |||||||||! !!!...!!!.||||||:!:|||! !!:!||||||:!!|||! !|||| AspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProI 221358 : GATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGA : 221415 32 : leGlyAlaTrpProAsnLeuArgLys<->SerArgIleGlyLysCysTyrSerLeuLe : 49 |||||!.!|||||||||! ! !!!. |||! !:!!! !!:!! ! !! !! !|| leGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLe 221416 : TCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 50 : uIleSerIleIleCysTyrSerLeuIleGlyPheMetLeuValSerCysSerIlePhe : 68 ||||!:!:!!:!!||||||||||||||| !|||:!:|||||| !!||||||:!!!:! uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 69 : LeuMetValGluIleAsnAsnIleTyrAsnLysLeuLysMetValGlyProLeuSerP : 88 :!!!!::!!|||:!!.!.:!!:!!||||||!:!:!!|||:!!:!!||||||||||||| ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 89 : hePheValMetThrIleMetLysTyrTyrPheLeuLeuPheHisGluAsnAspIleAr : 107 ||! !||||||.!!.!!:!:||||||:!!.!.|||:!!.!!:!!|||||||||||||| heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 108 : gGluGlyIleGluArgIleGluTrpAspTrpLysAsnValLysHisGlnGluAspArg : 126 |||| !!||||||||||||||||||||||||||||||:!!! :!!...:!!|||!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 127 : AsnIleMetIleThrTyrAlaAsnTyrGlyArgLysLeuAlaPheIleCysPhePheP : 146 :!!||||||||| ! !!|||! !!:!||||||::!||| !.!.|||||| |||| AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 147 : heMetLeuCysAlaPheIlePheTyrPheLeuIleGlnProPheGlyGlyGlyLysIl : 165 |||||! ! !!...|||:::||||||:::::! ! !||||||.!!! !|||||||| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 166 : e<-><->ValAspGlyAsnLeuThrPheIleGlnLeuProPheProIleSerIleLeu : 182 | !||| |||:::|||||||||! !:!! !||||||.!!|||! !!!! eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 183 : IleAlaAspValArgAspSerProTyrAsnGluIleMetLeuSerIleGlnIleLeuT : 202 |||!.!|||..!||| !!|||||| |||||||||:!!!!!|||:!!||||||:!!. IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 203 : hrGlyIleValMetAsnAlaIleArgSerAlaIleCysSerValAlaAlaValPheAl : 221 !!||| !:!!|||:!!::!|||! !|||||| !||||||:!!!.!|||:!!||||| laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 222 : aIleHisAlaCysGlyGlnMetGlnValLeuMetAsnTrpLeuAsnHisLeuValGlu : 240 |:!:||||||||||||||||||||||||||||||!:!||||||!!.||||||:!!.!. aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 241 : GlyArgSerAspMetSerLysLysIleAspAspArgIleAlaAsnIleValIleGlnH : 260 ||||||:!!||||||!!!!!.!!.:!:||| |||||||||!!.||||||! !|||| GlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnH 222052 : GGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAAC : 222111 261 : isAspArgIleLeuLysPheLeu : 267 ||! !|||||||||:!!!:!:!! isValArgIleLeuGlnTyrVal 222112 : ACGTTCGAATATTGCAGTATGTA : 222134 vulgar: AmOr29 11 267 . KQ414889.1 221357 222134 + 734 M 28 84 G 0 3 M 126 378 G 0 6 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221358 222134 734 + . gene_id 5 ; sequence AmOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221358 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221358 222134 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221358 222134 734 + . alignment_id 5 ; Query AmOr29 ; Align 221358 12 84 ; Align 221445 40 378 ; Align 221829 166 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 629 Query range: 2 -> 388 Target range: 256604 -> 258624 3 : AsnGlnGlnValValIleThrGlnAspAspTyrLysArgLysThrAsnLeuSerIleG : 22 !.!.!.:!! !!!.!:!:..!:!! :!!!:!|||!!! ! !:!:!!! !|||:!!| ThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerLeuG 256605 : ACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTCTCC : 256662 23 : lnTrpAsnArgTrpLeuLeuThrProIleGlyAlaTrp<->ProAsnLeuArgLysSe : 40 ||! !|||||||||!!!|||! !||||||||||||||| |||:::! ! !! !! lnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerThrTh 256663 : AGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCACTAC : 256719 41 : rArgIleGlyLysCysTyrSerLeuLeuIleSerIleIleCysTyrSerLeuIleGly : 59 !! !:!!! !::! ! !|||:!!:!!:!:!:!|||:!!||||||.!!! !||| ! rThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIleLeu 256720 : AACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATATTG : 256776 60 : PheMetLeuValSerCysSerIlePheLeuMetValGluIleAsnAsnIleTyrAsnL : 79 |||! |||:!! !!|||! !:!! !:!!.!.:!!!!: !:!!!:!.!!||| | PheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrMetL 256777 : TTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAcatga : 256836 80 : ysLeuLysMetValGlyProLeuSerPhePheValMetThrIleMetLysTyrTyrPh : 98 ||:::||| ||||||:!!||| !!:::!!!!:!:! ! !!.||| !! ysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrThrLe 256837 : aagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACACGTT : 256893 99 : eLeuLeuPheHisGluAsnAspIleArgGluGlyIleGluArgIleGluTrpAspTrp : 117 .||||||!!.!!.! !!!.||||||||| ! !!:!!|||!.!|||||| !|||||| uLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAspTrp 256894 : GCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGATTGG : 256950 118 : LysAsnValLysHisGlnGluAspArgAsnIleMetIleThrTyrAlaAsnTyrGlyA : 137 !:!! |||!:!...:!!:!!|||!:!.!.:!:|||!!:! ! !!|||!..!:!|||| ArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheGlyA 256951 : AGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCGGTC : 257010 138 : rgLysLeuAlaPheIleCysPhePhePheMetLeuCysAlaPheIlePheTyrPheLe : 156 || ! :!!||| .!!||| !.!!|||! ! !!!.! ... :::|||:: rgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePheVa 257011 : GTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttcttcgt : 257067 157 : uIleGlnProPheGlyGlyGlyLysIleValAspGlyAsnLeuThrPheIleGlnLeu : 175 ! ..! !!.!...! !! !! !||| !! |||||| !||| ||| !! ! lSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleValArg 257068 : GTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTGCGA : 257124 176 : ProPheProIleSerIleLeu<-><->IleAlaAspValArgAspSerProTyrAsnG : 193 !.!.|||:!!!!!:!:! ! :!: !:!!||| !.!.|||||| |||| ValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrAsnG 257125 : GTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACG : 257184 194 : luIleMetLeuSerIleGlnIleLeuThrGlyIleValMetAsnAlaIleArgSerAl : 212 |||||:!!:!!! !!!:|||! !! !:!!..!|||:!! !!.!.!!! !! ! !:: luIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrValSe 257185 : AGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAG : 257241 213 : aIleCysSerValAlaAlaValPheAlaIleHisAlaCysGlyGlnMetGlnValLeu : 231 !|||! !|||:!!|||||||||||||||! !||||||! !||||||:!! |||||| rIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrValLeu 257242 : TATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTT : 257298 232 : MetAsnTrpLeuAsnHisLeuValGluGlyArgSerAspMetSerLysLysIleAspA : 251 |||:::|||:!!!...!.!!!|||.!.! ! !!!!:!! ...||| ... MetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheProP 257299 : ATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttcctt : 257358 252 : spArgIleAlaAsnIleValIleGlnHisAsp<->ArgIleLeu{Ly} >>>> Tar : 265 !!:! ! !..!:!::!!:!::!!||| !! |||:!:|||{!.} heLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Se}++ 257359 : tCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt........ : 257407 266 : get Intron 1 >>>> {s}PheLeuAlaLeuThrGluArgAlaLeuGlnGlnIle : 277 76 bp {.}|||:!!:!!! !! !|||..!!.!:!!.!.!:!||| ++{r}PheIleSerTyrIleGluGluValMetAsnArgIle 257408 : .................ag{T}TTCATATCATATATCGAGGAAGTGATGAACCGAATA : 257515 278 : SerPheValGluPheLeuGlyCysThrAlaAsnMetCysLeuLeuGlyTyrTyrLeuI : 297 !!!|||:!!|||!!.!!! !!|||||| ! !!!:|||:!!||||||||||||:!!: CysPheLeuGluLeuPheArgCysThrLeuAlaIleCysMetLeuGlyTyrTyrIleL 257516 : TGTTTTTTAGAGTTGTTTAGATGCACGCTGGCTATATGCATGCTGGGATACTACATTC : 257575 298 : leVal >>>> Target Intron 2 >>>> GluTrpAsnProLysGluLeuIle : 306 !!!.! 684 bp ||||||::! !!::::::::: euAla++ ++GluTrpSerThrGlnAspIleGln 257576 : TTGCGgt.........................aggaATGGTCTACGCaagatattcaa : 258286 307 : ValSerPheThrTyrIleAlaIleIleAlaSerIleThrPheAsnIlePheIlePheC : 326 :::|||.!! !|||:!! !|||::::::||||||||||||:::...| AsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValIleC 258287 : aatttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaatat : 258346 327 : ysTyrIleGlyGluLeuValAlaGluGln >>>> Target Intron 3 >>>> : 336 ||||||||||||||:!!:!!.!!|||||| 90 bp ysTyrIleGlyGluIleLeuThrGluGln++ ++ 258347 : gttACATAGGTGAAATATTAACAGAACAGgt.........................ag : 258464 337 : ThrGluLysValGlyGluValAlaTyrMetIleGluTrpTyrArgIleArgGlyLysL : 355 !:!!|||||||||!!:|||!.!||||||! !!!:|||||| !:!!! !! !|||! CysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspLysA 258465 : TGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAAA : 258523 356 : ysLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleLysPheThrAl : 374 :!! !||| !! :!!|||:!!|||||| |||!:! ! !:!!:!!.!!||||| rgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleThrAl 258524 : GAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGC : 258580 375 : aGlyAsnMetValGluLeuSerIleTyrThrPheSerAspVal : 388 ||||...... ...::!|||||||||||||||||||||||| aGlyLysPhePheHisMetSerIleTyrThrPheSerAspVal 258581 : GggaaaattctttcacatGTCCATTTACACATTCAGCGATGTG : 258624 vulgar: AmOr29 2 388 . KQ414889.1 256604 258624 + 629 M 32 96 G 0 3 M 148 444 G 0 6 M 79 237 G 0 3 M 3 9 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256605 258624 629 + . gene_id 6 ; sequence AmOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256605 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256605 257404 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256605 258624 629 + . alignment_id 6 ; Query AmOr29 ; Align 256605 3 96 ; Align 256704 35 444 ; Align 257154 183 237 ; Align 257394 262 9 ; Align 257482 266 99 ; Align 258265 299 111 ; Align 258466 336 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 600 Query range: 19 -> 398 Target range: 284526 -> 287252 20 : SerIleGlnTrpAsnArgTrpLeuLeuThrProIleGlyAlaTrpPro<->AsnLeuA : 38 |||:!!||| !|||||||||!!!|||! !|||||||||!.!|||||| !:!||| SerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuC 284527 : AGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCT : 284584 39 : rgLysSerArgIleGlyLysCysTyrSerLeuLeuIleSerIleIleCysTyrSerLe : 57 !! !!!!! !:!:! !||| ! !|||:!!:!!:!!:!!:!!||| !!! !! !|| ysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLe 284585 : GCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCT : 284641 58 : uIleGlyPheMetLeuValSerCysSerIlePheLeuMetValGlu<->IleAsnAsn : 75 ||||||||||:!:|||||| !!|||:!!:!:! ! !:!!:!!!!: ! !..!:!! uIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAsp 284642 : GATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGAT : 284698 76 : IleTyrAsnLysLeuLysMetValGlyProLeuSerPhePheValMetThrIleMetL : 95 :!! !!!..|||:!!||||||:!!|||||||||||||||! !:!!|||.!! !!:| LeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleL 284699 : CTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCA : 284758 96 : ysTyrTyrPheLeuLeuPheHisGluAsnAspIleArgGluGlyIleGluArgIleGl : 114 ||||||||.!!|||:!!! !.!! ..! ! ||| !!:!! !!:!::!! !|||.. ysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIleAr 284759 : AGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCG : 284815 115 : uTrpAsp{Tr} >>>> Target Intron 1 >>>> {p}LysAsnValLysHis : 122 . !|||{||} 1012 bp {|} ::: !!..... gAlaAsp{Tr}++ +-{p}LeuSerHisSerGln 284816 : TGCGGAC{TG}gt.........................ac{G}CTTTCGCATAGtcaa : 285851 123 : GlnGluAspArgAsnIleMetIleThrTyrAlaAsnTyrGlyArgLysLeuAlaPheI : 142 :::|||:::|||...||||||! ! !|||!.. !||||||...||||||.!!. GluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIleP 285852 : gaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCT : 285911 143 : leCysPhePhePheMetLeuCysAlaPheIlePheTyrPheLeuIleGlnProPheGl : 161 !!||| ! !||||||! !! !!.! .!!|||||| ! !:!:..!|||!!. ! heCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCy 285912 : TCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTG : 285968 162 : yGlyGlyLysIle<->ValAspGlyAsnLeuThrPheIleGlnLeuProPheProIle : 179 ! !! !:::! :!! !! !||| !||| ! ! !...! ! !!||||||||| sThrValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIle 285969 : CACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATC : 286025 180 : SerIleLeuIleAlaAspValArgAspSerProTyrAsnGluIleMetLeuSerIleG : 199 ! ! ! !:!! !||| !||| !||||||! !||||||:!!! !! !!!:| TyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetG 286026 : TATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGC : 286085 200 : lnIleLeuThrGlyIleValMetAsnAlaIleArgSerAlaIleCysSerValAlaAl : 218 || !|||.!!!.!.!!|||!!: !!:!!:!!! ! !!.! !||||||:!!||||| lnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAl 286086 : AATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGC : 286142 219 : aValPheAlaIleHisAlaCysGlyGlnMetGlnValLeuMetAsnTrpLeuAsnHis : 237 |||||||!.!!!:|||!.!|||||||||.!.::!:!!|||:!!!.. !|||:!! ! aValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLys 286143 : TGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAG : 286199 238 : LeuValGluGlyArgSerAspMetSer<-><->LysLysIleAspAspArgIleAlaA : 255 ||||||!!:||| !!.!! ! !!.! !..! ! !!!:.!.|||:!:!.!: LeuValAspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyA 286200 : CTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAG : 286259 256 : snIleValIleGlnHisAspArgIleLeu{Ly} >>>> Target Intron 2 >> : 265 !!|||:!! !!.||| !:!||||||{ } 408 bp spIleIleGluHisHisLeuLysIleLeu{Gl}++ 286260 : ATATCATCGAGCATCATCTGAAGATACTG{GG}gt....................... : 286293 266 : >> {s}PheLeuAlaLeuThrGluArgAlaLeuGlnGlnIleSerPheValGluPhe : 282 { }|||:!!:!!! !! !||| !! !|||.!.:!!|||!!!||||||||| ! ++{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluVal 286294 : ..ag{T}TTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTG : 286748 283 : LeuGlyCysThrAlaAsnMetCysLeuLeuGlyTyrTyrLeuIleVal >>>> Tar : 299 :!!||||||||| !|||!!:|||!!!|||||||||||||||:!:..! IleGlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeuThr++ 286749 : ATTGGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTACTGACGgt........ : 286801 300 : get Intron 3 >>>> GluTrpAsnProLysGluLeuIleValSerPheThrTyr : 311 80 bp ||||||.!.! !!..||| !|||! !!!!.!!|||||| ++GluTrpGluGlnSerGluThrIleGlyThrIleThrTyr 286802 : .................agGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTAT : 286915 312 : IleAlaIleIleAlaSerIleThrPheAsnIlePheIlePheCysTyrIleGlyGluL : 331 !.!!:!::!:!.!|||.!!|||||||||:!!||||||.!!|||||||||||||||: CysThrLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluI 286916 : TGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAA : 286975 332 : euValAlaGluGln >>>> Target Intron 4 >>>> ThrGluLysValGly : 340 !!:!!:!!|||||| 74 bp ! !||||||||| leLeuSerGluGln++ ++CysLeuLysValGly 286976 : TTCTCTCCGAACaggt.........................agtGCTTAAAAGTCGGC : 287076 341 : GluValAlaTyrMetIleGluTrpTyrArgIleArgGlyLysLysLysLeuCysCysV : 360 ! !.!!|||||||||!!:|||||||||:!:! !||||||! ! ! ! !!! : LeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuI 287077 : TTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGA : 287136 361 : alLeuIleIleAlaMetSerAsnSerSerIleLysPheThrAlaGlyAsnMetValGl : 379 !!||||||.!!|||:!!||||||||||||||||||!!.|||||||||!!.!!::!!!! leLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAs 287137 : TACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGA : 287193 380 : uLeuSerIleTyrThrPheSerAspValValLysThrSerValAlaPheLeuAsnMet : 398 :||||||:!! !!:!|||!!!..!||| !! ! !!:!:!!:!!!:!! !:!!:!! pLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 287194 : TCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 287250 vulgar: AmOr29 19 398 . KQ414889.1 284526 287252 + 600 M 16 48 G 0 3 M 37 111 G 0 3 M 44 132 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 48 144 G 0 3 M 81 243 G 0 6 M 18 54 S 0 2 5 0 2 I 0 404 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284527 287252 600 + . gene_id 7 ; sequence AmOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284527 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284527 284825 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286698 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 4 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 3 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284527 287252 600 + . alignment_id 7 ; Query AmOr29 ; Align 284527 20 48 ; Align 284578 36 111 ; Align 284692 73 132 ; Align 285839 118 144 ; Align 285986 166 243 ; Align 286235 247 54 ; Align 286700 266 99 ; Align 286879 299 111 ; Align 287064 336 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 556 Query range: 6 -> 337 Target range: 259736 -> 261850 7 : ValIleThrGlnAspAspTyrLysArgLysThrAsnLeuSerIleGlnTrpAsnArgT : 26 |||.!!..!:!! ..!!:!! !!! ! !:!:!!! !|||:!!|||!::||||||| ValPheValGluThrSerPheThrSerHisSerAspTyrSerLeuGlnPheAsnArgT 259737 : GTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCCAATTTAATCGAT : 259794 27 : rpLeuLeuThrProIleGlyAlaTrp<->ProAsnLeuArgLysSerArgIleGlyLy : 44 ||!!!|||! !||||||||||||||| |||:::! ! !! !!!!|||:!!! !|| rpPheLeuLysProIleGlyAlaTrpProProSerSerSerThrThrArgLeuGluLy 259795 : GGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCACGACCAGACTCGAGAA : 259851 45 : sCysTyrSerLeuLeuIleSerIleIleCysTyrSerLeuIleGlyPheMetLeuVal : 63 | ! !|||:!!:!!:!:! !.!!|||||||||||| !||| ! !!! |||:!! sIleIleSerValIleLeuIlePheIleCysTyrSerThrIleLeuValThrLeuIle 259852 : GATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATACTGGTCACCCTGATC : 259908 64 : SerCysSerIlePheLeuMetValGluIleAsnAsnIleTyrAsnLysLeuLysMetV : 83 !!||| !:!! !:!!:!::!!|||! .!.!:!:!:|||! ||| !|||:!!: ProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrMetLysThrLysValL 259909 : CCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGAAGGTGC : 259968 84 : alGlyProLeuSerPhePheValMetThrIleMetLysTyrTyrPheLeuLeuPheHi : 102 !!|||||||||!!! !!:: !!:!: ! !!!:!!.||| ||||||!!... euGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrThrThrLeuLeuLeuAr 259969 : TCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTGTTGAG : 260025 103 : sGluAsnAspIleArgGluGlyIleGluArgIleGluTrpAspTrpLysAsnValLys : 121 .! !..||||||! !... !!:!:|||!.!:!:||| ||||||!:!! !:!!! ! gGlyArgAspIleLeuSerCysValGluHisValGluAsnAspTrpArgIleIleThr 260026 : AGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGAATTATAACG : 260082 122 : HisGlnGluAspArgAsnIleMetIleThrTyrAlaAsnTyrGlyArgLysLeuAlaP : 141 ...:!!:!!|||!:!|||:!:|||:!:! !||||||!!.!:!|||||| ! :!!||| ArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgTyrValAlaA 260083 : AGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGATACGTCGCTG : 260142 142 : heIleCysPhePhePheMetLeuCysAlaPheIlePheTyrPheLeuIleGlnProPh : 160 ! !||| !|||:!!! ! !!!.! !!:!:! !!:!! !|||:!! ! !!! laSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCysLeuValThrValLe 260143 : CCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTCACGGTGTT : 260199 161 : eGlyGlyGlyLysIleValAspGlyAsnLeuThrPheIle<-><->GlnLeuProPhe : 177 ..!! !! ! !||| !! |||||| !||| ||| ! !||||||! ! uSerThrGluValIleGlnValGlyAsnGluThrArgIleValHisLeuLeuProCys 260200 : GAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTGCCGTGC : 260256 178 : ProIleSerIleLeuIleAlaAspValArgAspSerProTyrAsnGluIleMetLeuS : 197 !!:!:! !! ! !:!: !:!!|||!.!||||||||| |||||||||:!:||| AlaValTyrLysGluLeuIleAsnValAsnAspSerProMetAsnGluIleValLeuV 260257 : GCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGATTGTTCTCG : 260316 198 : erIleGlnIleLeuThrGlyIleValMetAsnAlaIleArgSerAlaIleCysSerVa : 216 !:!:|||.!!:!!:!!|||.!!:!!:!!|||:!!! !! ! !!.!|||! !|||:! alValGlnPheValSerGlyPheIleValAsnSerSerThrValGlyIlePheSerLe 260317 : TCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTTCAGTCT : 260373 217 : lAlaAlaValPheAlaIleHisAlaCysGlyGlnMetGlnValLeuMetAsnTrpLeu : 235 !|||||||||.!..!! !|||||||||||||||:!!.!.|||||||||.!.|||:!! uAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMetGluTrpIle 260374 : CGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAATGGATC : 260430 236 : AsnHisLeuValGluGlyArgSerAspMetSerLysLysIleAspAspArgIleAlaA : 255 !...!.!!!|||!!:! ! !!!!:!!! !!.!|||||| ! ! !!:! !. ThrGluPheValAspGluSerArgAsnArgLysLysLysAlaProPheLysGluIleG 260431 : ACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTCCTTTCAAGGAGATCG : 260490 256 : snIleValIleGlnHisAsp<->ArgIleLeu{Ly} >>>> Target Intron 1 : 265 ..:!::!!:!!:!!||| !! ||| !|||{! } 257 bp lyValIleValGluHisHisLeuArgAlaLeu{Th}++ 260491 : GAGTGATTGTCGAACATCATTTGAGAGCACTC{AC}gt.................... : 260527 266 : >>>> {s}PheLeuAlaLeuThrGluArgAlaLeuGlnGlnIleSerPheValGlu : 281 { }|||:!!:!!! !! !||| !!.!:!!.!.!:!|||!!!|||:!!||| ++{r}PheIleSerArgIleGluAspValMetAsnArgIleCysPheLeuGlu 260528 : .....ag{C}TTCATATCGCGTATCGAGGATGTGATGAACCGGATATGCTTCCTGGAG : 260828 282 : PheLeuGlyCysThrAlaAsnMetCysLeuLeuGlyTyrTyrLeuIleVal >>>> : 299 !!.!!! !!|||||| !:!!!!:||||||||||||||||||:!!:!!:!! LeuPheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeuMet++ 260829 : TTGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATATTCTTATGgt..... : 260884 300 : Target Intron 2 >>>> GluTrpAsnProLysGluLeuIleValSerPheThr : 310 852 bp |||||| ! !:!!!!::!! ! ! !! !||| ++GluTrpAlaGluGlnAspIleGlnAsnLeuSerThr 260885 : ....................agGAATGGGCTGAGCAAGATATACAAAATCTGTCCACG : 261767 311 : TyrIleAlaIleIleAlaSerIleThrPheAsnIlePheIlePheCysTyrIleGlyG : 330 |||.!! !!!::!: !:!!||| !||||||:!!||||||.!!||||||||||||| TyrPheMetMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyG 261768 : TATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTG : 261827 331 : luLeuValAlaGluGlnThrGlu : 337 ||:!!:!!.!!||||||..!:!! luIleLeuThrGluGlnValGln 261828 : AAATACTAACGGAACAGGTACAA : 261850 vulgar: AmOr29 6 337 . KQ414889.1 259736 261850 + 556 M 28 84 G 0 3 M 139 417 G 0 6 M 88 264 G 0 3 M 3 9 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259737 261850 556 + . gene_id 8 ; sequence AmOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259737 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259737 260524 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261850 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261850 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259737 261850 556 + . alignment_id 8 ; Query AmOr29 ; Align 259737 7 84 ; Align 259824 35 417 ; Align 260247 174 264 ; Align 260514 262 9 ; Align 260783 266 99 ; Align 261734 299 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 404 Query range: 0 -> 297 Target range: 274329 -> 275306 1 : MetLysAsnGlnGlnValValIleThrGlnAspAspTyrLysArgLysThrAsnLeuS : 20 |||! !|||.!. !.!:!!! !..! ! :!!!:! ! !!! !:!:!!! !| MetThrAsnAsnCysAlaIleAsnValThrAlaAsnPheAspSerLeuSerAspTyrS 274330 : ATGACAAACAACTGTGCGATAAACGTAACTGCGAATTTCGACAGTCTCAGCGACTACA : 274387 21 : erIleGlnTrpAsnArgTrpLeuLeuThrProIleGlyAlaTrpProAsnLeuArg<- : 39 ||:!:|||! !|||||||||!!!|||! !|||||||||||||||||| ! ! erLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaSerPr 274388 : GCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCC : 274444 40 : >LysSerArgIleGlyLysCysTyrSerLeuLeuIleSerIleIleCysTyrSerLeu : 57 ! !!!!:!.!!! !::! ! !|||! !|||::: ...:::||||||!!!!!! oThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCysPhe 274445 : CACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTGCTTC : 274501 58 : IleGlyPheMetLeuValSerCysSerIlePheLeuMetValGluIleAsnAsnIleT : 77 ||| !! !! :!!:!! !! !!! !.!! !:!!!!::!!! ! !.!.!:!:!!: IleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGluSerLeuH 274502 : ATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGTCTCC : 274561 78 : yrAsnLysLeuLysMetValGlyProLeuSerPhePheValMetThrIleMetLysTy : 96 !! |||||||||:!!:!!|||||||||.!! !!:: !!!!: ! !!!:!!.|| isLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTy 274562 : ATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTA : 274618 97 : rTyrPheLeuLeuPheHisGluAsnAspIleArgGluGlyIleGluArgIleGluTrp : 115 | ! ||||||.!.!.!...!!.!!:||||||! !!:!:|||!.!!!::!! rThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThr 274619 : CACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACA : 274675 116 : AspTrpLysAsnValLysHisGlnGluAspArgAsnIleMetIleThrTyrAlaAsnT : 135 ||||||!:!! !|||! ...! !||||||!:!.!.:!:|||:!:! ! !!|||!!. AspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsnAlaLysI 274676 : GATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGA : 274735 136 : yrGlyArgLysLeuAlaPheIleCysPhePhePheMetLeuCysAlaPheIlePheTy : 154 !|||||| ! :!!|||.!!.!!||| ||||||! !|||!.! !!:!!! !|| leGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuCysTy 274736 : TCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTA : 274792 155 : rPheLeuIleGlnProPheGlyGlyGlyLysIleValAspGlyAsn<-><->LeuThr : 171 |! !:!!||| ! !!||| ! ! !! :!! !! |||||| !||| rCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrArgThr 274793 : TTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACC : 274849 172 : PheIleGlnLeuProPheProIleSerIleLeuIleAlaAspValArgAspSerProT : 191 ! !..!||||||! ! ! !! !! !|||!.!! ||| ! |||||| ValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThrSerProT 274850 : GTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGA : 274909 192 : yrAsnGluIleMetLeuSerIleGlnIleLeuThrGlyIleValMetAsnAlaIleAr : 210 |||||||||:!:|||:!! |||.!!:!!:!!|||.!!:!!:!!|||:!!! ! hrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerSerAl 274910 : CGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGC : 274966 211 : gSerAlaIleCysSerValAlaAlaValPheAlaIleHisAlaCysGlyGlnMetGln : 229 ! !!.! !! !|||:!!||||||||||||||| !||||||! !||||||:!!... aValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSer 274967 : GGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGC : 275023 230 : ValLeuMetAsnTrpLeuAsnHisLeuValGluGlyArgSerAspMetSerLysLysI : 249 |||||||||! |||:!!!.!.!.!!!|||.!. ! !!!!|||...:::|||...: ValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsnLysAsnV 275024 : GTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaaaatg : 275083 250 : leAspAspArgIleAlaAsnIleValIleGlnHisAsp<->ArgIleLeu{Ly} >> : 265 :: ! !..!:!:|||:!!:!!||| !! |||:!!|||{!.} alTyrPheSerGluIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 275084 : tttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTC{AG}gt.. : 275138 266 : >> Target Intron 1 >>>> {s}PheLeuAlaLeuThrGluArgAlaLeuGln : 275 74 bp {.}|||:!!|||! !! !||| !!.!:!!.!. ++{r}PheIleAlaArgIleGluAspValMetAsn 275139 : .......................ag{T}TTCATAGCACGTATCGAGGATGTGATGAAT : 275238 276 : GlnIleSerPheValGluPheLeuGlyCysThrAlaAsnMetCysLeuLeuGlyTyrT : 295 !:!|||!!!|||:!!|||!!.!!! !|||||| !:!!||||||:!!|||||||||| ArgIleCysPheMetGluLeuPheLysCysThrLeuAspMetCysMetLeuGlyTyrT 275239 : CGAATATGCTTCATGGAATTGTTCAAGTGTACTCTGGATATGTGCATGCTTGGCTATT : 275298 296 : yrLeuIle : 297 ||:!!:!! yrIleLeu 275299 : ACATTCTC : 275306 vulgar: AmOr29 0 297 . KQ414889.1 274329 275306 + 404 M 38 114 G 0 3 M 131 393 G 0 6 M 92 276 G 0 3 M 3 9 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274330 275306 404 + . gene_id 9 ; sequence AmOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274330 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274330 275135 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274330 275306 404 + . alignment_id 9 ; Query AmOr29 ; Align 274330 1 114 ; Align 274447 39 393 ; Align 274846 170 276 ; Align 275125 262 9 ; Align 275211 266 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 385 Query range: 14 -> 269 Target range: 232447 -> 233221 15 : ArgLysThrAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuThrProIleGlyAlaT : 34 ||| ! !.!.! !||||||||| !|||||||||!!!|||||||||!!:||||||| ArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaT 232448 : CGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCAT : 232505 35 : rpProAsnLeuArgLys<->SerArgIleGlyLysCysTyrSerLeuLeuIleSerIl : 52 |||||..!:!!! !:!! |||||| ! !:!! !:!! !|||:!:!!!:! rpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLe 232506 : GGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACT : 232562 53 : eIleCysTyrSerLeuIleGlyPheMetLeuValSerCysSerIlePheLeuMetVal : 71 !! !|||:!!||||||!!: !! ! !:!!||| !!|||! !:!:|||:!!:!! !! uThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPhe 232563 : CACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTC : 232619 72 : GluIleAsnAsnIleTyrAsnLysLeuLysMetValGlyProLeuSerPhePheValM : 91 ||| !!..!:!:!! ! .!.!:!:!!||| :!!||||||:!!||| !|||:!!| GluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuM 232620 : GAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGA : 232679 92 : etThrIleMetLysTyrTyrPheLeuLeuPheHisGluAsnAspIleArgGluGlyIl : 110 || ! !:!!!!.|||! !! !|||||| ! ! !|||||||||! ! ! !!:! etGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysVa 232680 : TGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGT : 232736 111 : eGluArgIleGluTrpAspTrpLysAsnValLysHisGlnGluAspArgAsnIleMet : 129 :|||!:!:!::!! !||||||::!||||||||| ! ! ! !!|||:!!:!:||| lGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMet 232737 : GGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATG : 232793 130 : IleThrTyrAlaAsnTyrGlyArgLysLeuAlaPheIleCysPhePhePheMetLeuC : 149 :!:! ! !!|||!!. !||||||..!:!!|||! !|||..! |||! !|||! ! LeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisT 232794 : TTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACA : 232853 150 : ysAlaPheIlePheTyrPheLeuIleGlnProPheGlyGlyGlyLysIleValAspGl : 168 !!.! !! !! ! !! :!!:!! ! !.!! !! !.!!! !.!! !! || hrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGl 232854 : CCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGG : 232910 169 : yAsnLeuThrPheIleGlnLeuProPheProIleSerIleLeu<-><->IleAlaAsp : 185 |||| !!:!!:! ..!! !|||!!.||| !!!!.!!! ! :!: !||| yAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAsp 232911 : GAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGAC : 232967 186 : ValArgAspSerProTyrAsnGluIleMetLeuSerIleGlnIleLeuThrGlyIleV : 205 ..!||| !|||||| ||||||||||||!!! !:!!||| !|||:!!|||.!!: ThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheI 232968 : ACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCA : 233027 206 : alMetAsnAlaIleArgSerAlaIleCysSerValAlaAlaValPheAlaIleHisAl : 224 !!:!!|||:!!:!!! ! !!.! !|||.!!:!!!.!||||||.!.|||!!:||||| leValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAl 233028 : TCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGC : 233084 225 : aCysGlyGlnMetGlnValLeuMetAsnTrpLeuAsnHisLeuValGluGlyArgSer : 243 ||||||||||:!!.!.|||:!!|||::: |||:!! !!||||||!!:!.!!:!.!! aCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGly 233085 : GTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGG : 233141 244 : AspMetSerLysLysIleAspAspArgIleAlaAsnIleValIleGlnHisAspArgI : 263 .!. !..!!:! .!. !:!:!!!.! !|||||| !!.||| |||! GlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgT 233142 : CAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTA : 233201 264 : leLeuLysPheLeuAlaLeu : 269 !|||!:!!:!|||:!!:!! hrLeuArgTyrLeuSerVal 233202 : CATTAAGGTATTTGTCTGTG : 233221 vulgar: AmOr29 14 269 . KQ414889.1 232447 233221 + 385 M 25 75 G 0 3 M 143 429 G 0 6 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232448 233221 385 + . gene_id 10 ; sequence AmOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232448 233221 . + . KQ414889.1 exonerate:protein2genome:local exon 232448 233221 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232448 233221 385 + . alignment_id 10 ; Query AmOr29 ; Align 232448 15 75 ; Align 232526 40 429 ; Align 232961 183 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 380 Query range: 3 -> 265 Target range: 266592 -> 267390 4 : GlnGlnValValIleThrGlnAspAspTyrLysArgLysThrAsnLeuSerIleGlnT : 23 .!.:!! !:!!:!!! !:!!! :!! !!.!!! !!:!:!!! !|||:!:|||! AsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerLeuGlnL 266593 : AACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCCTGCAAT : 266650 24 : rpAsnArgTrpLeuLeuThrProIleGlyAlaTrpProAsnLeuArg<->LysSerAr : 41 !|||||||||!!!|||! !|||||||||||||||||| ||| ! ! !|||!: euAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuThrSerLy 266651 : TGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCACATCTAA : 266707 42 : gIleGlyLysCysTyrSerLeuLeuIleSerIleIleCysTyrSerLeuIleGlyPhe : 60 !:!!! !::! ! !|||! ! !:!:! !:!!|||||||||!!!! !||| !||| sLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIleLeuPhe 266708 : ACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATACTGTTC : 266764 61 : MetLeuValSerCysSerIlePheLeuMetValGluIleAsnAsnIleTyrAsnLysL : 80 ! :!!:!! !!|||! !.!! !|||:!::!!||| !.!.!:!||| !!..|||: ThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgThrLysV 266765 : ACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTACGAAAG : 266824 81 : euLysMetValGlyProLeuSerPhePheValMetThrIleMetLysTyrTyrPheLe : 99 !!|||:!! !!|||||||||||| !!:: !!:!: ! !!!:!!.||| ! || alLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrThrThrLe 266825 : TGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACACCACACT : 266881 100 : uLeuPheHisGluAsnAspIleArgGluGlyIleGluArgIleGluTrpAspTrpLys : 118 ||||.!.!.!...!!.!!:||||||! !!:!!|||!.!!!::!! ||||||!:! uLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArg 266882 : GTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGATTGGAGG : 266938 119 : AsnValLysHisGlnGluAspArgAsnIleMetIleThrTyrAlaAsnTyrGlyArgL : 138 ! !|||! ...! !||||||!:!.!.:!:|||:!:! ! !!|||!.. !|||||| IleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleGlyArgT 266939 : ATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCGGTCGTT : 266998 139 : ysLeuAlaPheIleCysPhePhePheMetLeuCysAlaPheIlePheTyrPheLeuIl : 157 ! :!!|||.!..!!||| ||||||! !|||!.! !!:!! !|||! !:!!|| yrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCysValIl 266999 : ACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGTGAT : 267055 158 : eGlnProPheGlyGlyGlyLysIleValAspGlyAsnLeuThrPheIle<-><->Gln : 174 | ! !!||| ! ! !! :!:! !! !|||||| !||| ||| ! ! eThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleValHisLeu 267056 : AACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTACATCTG : 267112 175 : LeuProPheProIleSerIleLeuIleAlaAspValArgAspSerProTyrAsnGluI : 194 ||||||! ! !!:!!! !! !!!: !! ||| ! !|||||| ||||||| LeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrAsnGluI 267113 : TTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGAACGAGA : 267172 195 : leMetLeuSerIleGlnIleLeuThrGlyIleValMetAsnAlaIleArgSerAlaIl : 213 ||:!:||| ! !|||.!!:!!:!!|||.!!:!!:!!|||:!!! ! ! !!.! leValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValValGlyAl 267173 : TTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCGGTGC : 267229 214 : eCysSerValAlaAlaValPheAlaIleHisAlaCysGlyGlnMetGlnValLeuMet : 232 !! !|||:!!||||||||||||||| !|||||||||||||||:!!...||||||||| aPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerValLeuMet 267230 : TTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTGATG : 267286 233 : AsnTrpLeuAsnHisLeuValGluGlyArgSerAspMetSerLysLysIle<->AspA : 251 ! |||:!!!!..!.!!!|||.!. !! !!!!|||! !:!|||!!.:!! !| MetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValCysPheA 267287 : ATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTTGCTTCG : 267346 252 : spArgIleAlaAsnIleValIleGlnHisAspArgIleLeuLys : 265 ||!:!|||!.! :!!||| !!!.||| |||:!!|||!:! spLysIleGlyValValValGluHisHisLeuArgValLeuArg 267347 : ATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGAGG : 267390 vulgar: AmOr29 3 265 . KQ414889.1 266592 267390 + 380 M 35 105 G 0 3 M 135 405 G 0 6 M 76 228 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266593 267390 380 + . gene_id 11 ; sequence AmOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266593 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266593 267390 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266593 267390 380 + . alignment_id 11 ; Query AmOr29 ; Align 266593 4 105 ; Align 266701 39 405 ; Align 267112 174 228 ; Align 267343 250 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 379 Query range: 10 -> 260 Target range: 262825 -> 263584 11 : AspAspTyrLysArgLysThrAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuThrP : 30 !!:..!!:! !!! !:!:!!! !|||:!:||| |||||||||||||||! !| GluSerPheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysP 262826 : GAAAGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAAC : 262883 31 : roIleGlyAlaTrpPro<->AsnLeuArgLysSerArgIleGlyLysCysTyrSerLe : 48 ||||||||||||||||| ::! ! !! ||||||!!:! !::! ! !!!!!! roIleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPh 262884 : CGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTT : 262940 49 : uLeuIleSerIleIleCysTyrSerLeuIleGlyPheMetLeuValSerCysSerIle : 67 !|||:!!! !:!!:!!||||||!!!|||||| !! !! :!!:!! !!! !! !:!! eLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeu 262941 : TCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTT : 262997 68 : PheLeuMetValGluIleAsnAsnIleTyrAsnLysLeuLysMetValGlyProLeuS : 87 !:!!:!::!!||| !.!.|||.!!:!!! ||||||:!!:!::!!|||||||||. HisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuG 262998 : CATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCG : 263057 88 : erPhePheValMetThrIleMetLysTyrTyrPheLeuLeuPheHisGluAsnAspIl : 106 !! !:: !!:!: !!!:!!:!!.||| !!::||||||.!!|||...!!.||||| lyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIl 263058 : GTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATAT : 263114 107 : eArgGluGlyIleGluArgIleGluTrpAspTrpLysAsnValLysHisGlnGluAsp : 125 |!:!! !!:!::!!!.!:!::!! |||||| ! !|||! ... !|||||| eGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAsp 263115 : ACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGAT : 263171 126 : ArgAsnIleMetIleThrTyrAlaAsnTyrGlyArgLysLeuAlaPheIleCysPheP : 145 !:!..!||||||:!:! ! !!|||!!.||||||||| ! :!!||| ! !||| . GlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaI 263172 : CAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGA : 263231 146 : hePheMetLeuCysAlaPheIlePheTyrPheLeuIleGlnProPheGlyGlyGlyLy : 164 !!||||||! ! ::!.!!!!:! ! ! ! !|||:!! ! !!||| ! ! ! lePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnVa 263232 : TCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGT : 263288 165 : sIleValAspGlyAsnLeuThrPheIle<-><->GlnLeuProPheProIleSerIle : 181 !|||! !||||||||| !||| ||| ..!||||||! !|||:!:! !! ! lIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLys 263289 : GATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAA : 263345 182 : LeuIleAlaAspValArgAspSerProTyrAsnGluIleMetLeuSerIleGlnIleL : 201 !||| ! ||| ! !:!||| |||||||||.!.|||:!!! |||.!!| GluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheL 263346 : GAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTC : 263405 202 : euThrGlyIleValMetAsnAlaIleArgSerAlaIleCysSerValAlaAlaValPh : 220 ||:!!|||.!!:!!:!:!.!|||! !! ! !!.! !! !.!!:!!.!!|||||||| euSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPh 263406 : TGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTT : 263462 221 : eAlaIleHisAlaCysGlyGlnMetGlnValLeuMetAsnTrpLeuAsnHisLeuVal : 239 |||| !|||||||||||||||:!!.!.|||||||||::!|||:!!!...!.!!!||| eAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheVal 263463 : CGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTG : 263519 240 : GluGlyArgSerAspMetSerLysLysIleAspAspArgIleAlaAsnIleValIleG : 259 .!. ! !!!!||| !!:!|||!!.:!! !! !! ! !..!:!::!!:!!: AsnGlnSerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValG 263520 : AACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTG : 263579 260 : lnHis : 260 !!||| luHis 263580 : AACAT : 263584 vulgar: AmOr29 10 260 . KQ414889.1 262825 263584 + 379 M 25 75 G 0 3 M 138 414 G 0 6 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262826 263584 379 + . gene_id 12 ; sequence AmOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262826 263584 . + . KQ414889.1 exonerate:protein2genome:local exon 262826 263584 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262826 263584 379 + . alignment_id 12 ; Query AmOr29 ; Align 262826 11 75 ; Align 262904 36 414 ; Align 263324 174 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 346 Query range: 0 -> 274 Target range: 236798 -> 237626 1 : MetLysAsnGlnGlnValValIleThrGlnAspAspTyrLysArgLysThrAsnLeuS : 20 |||!..|||.!.:!!..!|||:!!|||:!! !:!! ! !!..!:!:!!! !| MetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrS 236799 : ATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACA : 236856 21 : erIleGlnTrpAsnArgTrpLeuLeuThrProIleGlyAlaTrpProAsnLeuArgLy : 39 ||:!!||||||||||||||| !:!!! ! !||||||.!!||||||.!.!!! .. erLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPhe---Se 236857 : GTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTC---TC : 236910 40 : sSerArgIleGlyLysCysTyrSerLeuLeuIleSerIleIleCysTyrSerLeuIle : 58 !|||!.!:!!! !!:! ! !|||! !:!!:!!!:!:!:|||||||||!!! !||| rSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIle 236911 : GTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATA : 236967 59 : GlyPheMetLeuValSerCysSerIlePheLeuMetValGluIleAsnAsnIleTyrA : 78 !||| !:!!:!! !!||||||:!: !||||||:!!|||! !...!.!.!!|||! LeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrT 236968 : CTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACA : 237027 79 : snLysLeuLysMetValGlyProLeuSerPhePheValMetThrIleMetLysTyrTy : 97 ..|||:!!|||!!::!!||| !!|||||| !!::|||.!. !|||!!:!..||| hrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrTh 237028 : CGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACAC : 237084 98 : rPheLeuLeuPheHisGluAsnAspIleArgGluGlyIleGluArgIleGluTrpAsp : 116 !.!.||||||.!.!.....!!. !||||||.!. !.!!.!.!.!!!:||| ||| rMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAsp 237085 : CATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGAT : 237141 117 : TrpLysAsnValLysHisGlnGluAspArgAsnIleMetIleThrTyrAlaAsnTyrG : 136 |||!:!!....! ...:::||| :::...:::|||:!:! !||||||!!.!:!. TrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheS 237142 : TGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTA : 237201 137 : lyArgLysLeuAlaPheIleCysPhePhePheMetLeuCysAlaPheIlePheTyrPh : 155 !!||| ! !|||.!! !||| .!!|||!!:! ! !!!.!.!.:!! |||! erArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCy 237202 : GTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTG : 237258 156 : eLeuIleGlnProPheGlyGlyGlyLysIleValAspGlyAsnLeuThrPheIle<-> : 174 !:!!!!: ! !!! ! ! ! ! :!!|||! !|||||| !||| ||| sValMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLeu 237259 : TGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTG : 237315 175 : <->GlnLeuProPheProIleSerIleLeuIleAlaAspValArgAspSerProTyrA : 192 !||||||!!.|||!!:! !! ! !:!! ! ||| ! !:! !! | ArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetA 237316 : CGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGA : 237375 193 : snGluIleMetLeuSerIleGlnIleLeuThrGlyIleValMetAsnAlaIleArgSe : 211 ||!!:|||:!::!!! ! !|||.!!|||:!!|||.!!:!! !||| !! ! !! snAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIl 237376 : ACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGAT : 237432 212 : rAlaIleCysSerValAlaAlaValPheAlaIleHisAlaCysGlyGlnMetGlnVal : 230 !::!:!! |||:!!.!!::!!.!.!..!! !||||||! !||||||:!!...||| eSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerVal 237433 : CAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTG : 237489 231 : LeuMetAsnTrpLeuAsnHisLeuVal<->GluGlyArgSerAspMetSerLysLysI : 249 :!!||| ! !:!!.!. !!!!!||| |||!.!||| !! !!.! ! ! ValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAspH 237490 : GTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATC : 237549 250 : leAspAspArgIleAlaAsnIleValIleGlnHisAspArgIleLeuLysPheLeuAl : 268 ! !|||..!||| !!!..|||||| :!!||| |||:!:||||||! :!!.. isPheAspGluIleProThrIleValGluGluHisLeuArgValLeuLys***ValCy 237550 : ATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAGTATG : 237606 269 : aLeuThrGluArgAlaLeu : 274 !||| !!!: ! !||| sLeuLeuAspLeuIleLeu 237607 : TTTGTTGGATTTGATTTTG : 237626 vulgar: AmOr29 0 274 . KQ414889.1 236798 237626 + 346 M 37 111 G 1 0 M 135 405 G 0 6 M 66 198 G 0 3 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236799 237626 346 + . gene_id 13 ; sequence AmOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236799 237626 . + . KQ414889.1 exonerate:protein2genome:local exon 236799 237626 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 236799 237626 346 + . alignment_id 13 ; Query AmOr29 ; Align 236799 1 111 ; Align 236910 39 405 ; Align 237321 174 198 ; Align 237522 240 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 321 Query range: 18 -> 247 Target range: 200538 -> 202907 19 : LeuSerIleGlnTrpAsnArgTrpLeuLeuThrProIleGlyAlaTrp----ProAsn : 36 :!!!!!||||||||||||||||||:!!|||! ! !!!!:!.! !|||#### !!||| ValCysIleGlnTrpAsnArgTrpIleLeuLysSerMetAlaLeuTrp####ThrAsn 200539 : GTTTGCATACAGTGGAATCGTTGGATCTTGAAATCAATGGCTTTGTGGTTTGACAAAT : 200594 37 : LeuArgLysSerArgIleGlyLysCysTyrSerLeuLeuIleSerIleIleCysTyrS : 56 ! !! ! !||| !!!!. !|||!!!! !||||||||| !:!!|||!! . ProThrPheHisArgSerArgAsnAsnTyrThrArgLeuIleSerAlaValCys***G 200595 : CCAACATTTCACCGGTCGAGAAATAACTACACTCGGCTAATCAGTGCCGTTTGTTAAG : 200654 57 : erLeuIleGlyPheMetLeuValSerCysSerIlePheLeuMetValGluIleAsnAs : 75 !!|||!!:|||:::...|||::: ||||||:!! !:!!.!.:!!!!::!!.!.|| lyLeuMetGlyTyrPheLeuIleLeuCysSerLeuHisValPheLeuAspValGluAs 200655 : GATTGATGggttactttttaatattatgcAGTTTACACGTGTTTCTTGACGTAGAAAA : 200711 76 : nIleTyrAsnLysLeuLysMetValGlyProLeuSerPhePheValMet<->ThrIle : 93 |||| !!!.|||:!!|||:!! !!! !|||||| !.!..!! !:!! |||||| nIleLeuLysLysIleLysLeuPheValProLeuValLeuLeuCysLeuAlaThrIle 200712 : TATACTTAAAAAGATTAAATTGTTTGTTCCCCTAGTACTACTTTGCTTGGCTACGATT : 200768 94 : MetLysTyrTyrPheLeuLeuPheHisGluAsnAspIleArgGluGlyIleGluArgI : 113 :!!|||! !:!!!!.! !:!!.!!|||!!::!!|||! ! ! ! !! !|||!.!| LeuLysCysHisLeuSerValLeuHisAspAspAspThrTyrThrCysGlyGluHisI 200769 : TTGAAGTGTCATTTGTCGGTACTTCATGATGACGATACTTACACGTGTGGCGAGCATA : 200828 114 : leGluTrpAspTrpLysAsn<->ValLysHisGlnGluAspArgAsnIle{M} >>> : 129 ||:!!|||!!:|||!:! !! |||! !|||.!.||||||:::...|||{!} leLysTrpGluTrpArgTyrCysValThrHisAspGluAspLysLysIle{A}+- 200829 : TAAAATGGGAGTGGAGGTATTGTGTCACGCACGACgaggataaaaaaatt{a}ga... : 200882 130 : > Target Intron 1 >>>> {et}IleThrTyrAlaAsnTyrGlyArgLysLeu : 139 1681 bp { } !||| ! !! !:!! !|||!..! ! ++{sn}ProThrLysTrpIleHisProArgSerCys 200883 : ......................ag{AT}CCTACCAAATGGATTCACCCCCGAAGCTGT : 202590 140 : AlaPheIleCysPhePhePheMetLeuCysAlaPheIlePheTyrPheLeuIleGlnP : 159 |||::: :::! ! ! ||| |||||||||...::: AspHis***PhePheTyrThrLeuCysThrAspPheThrPheTyrPhePheValValS 202591 : gaccattaatttttttacaccctgTGCACAGattttaccttttatttttttgttgtaT : 202650 160 : roPheGlyGlyGlyLysIleValAspGlyAsnLeuThrPheIleGlnLeuProPhePr : 178 !!.!!||| !! !|||!!:|||! ! !:!!|||!:! :!! !!||| ! erLeuGlyLeuGluLysMetValAlaGluAspLeuSer---------ValThrPheSe 202651 : CGCTTGGCTTGGAGAAAATGGTAGCAGAGGATCTTAGT---------GTGACGTTCTC : 202698 179 : oIleSerIleLeuIleAlaAspValArgAspSerProTyrAsnGluIleMetLeuSer : 197 !.!!||| !!!!||| !||||||||| !!|||||| |||||||||.!.!!!||| rPheSerGlyPheIleIleAspValArgTyrSerProValAsnGluIlePhePheSer 202699 : CTTCTCAGGATTTATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCG : 202755 198 : IleGlnIleLeuThrGlyIleValMetAsnAlaIleArgSerAlaIleCysSerValA : 217 |||!:!|||:!!.!!! !|||:!!!!::!!!.!:!!! ! !!.! !|||!!!:!!. IleArgIleValAlaValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuT 202756 : ATTCGAATCGTAGCTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGA : 202815 218 : laAlaValPheAlaIleHisAlaCysGlyGlnMetGlnValLeuMetAsnTrpLeuAs : 236 !!|||:!!||||||:!!|||! !||||||||||||.!.||||||||| !||||||.! hrAlaLeuPheAlaValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGl 202816 : CAGCGTTGTTTGCGGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGA : 202872 237 : nHisLeuValGluGlyArgSerAspMetSerLys : 247 .||||||:!!!!:||||||||||||||||||||| uHisLeuMetAspGlyArgSerAspMetSerLys 202873 : ACATTTGATGGATGGTCGTTCGGATATGAGTAAA : 202907 vulgar: AmOr29 18 247 . KQ414889.1 200538 202907 + 321 M 16 48 F 0 4 M 57 171 G 0 3 M 28 84 G 0 3 M 9 27 S 0 1 5 0 2 I 0 1677 3 0 2 S 1 2 M 42 126 G 3 0 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 200539 202907 321 + . gene_id 14 ; sequence AmOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 200539 200879 . + . KQ414889.1 exonerate:protein2genome:local exon 200539 200879 . + . insertions 6 ; deletions 0 ; frameshifts 4 KQ414889.1 exonerate:protein2genome:local splice5 200880 200881 . + . intron_id 1 ; splice_site "ga" KQ414889.1 exonerate:protein2genome:local intron 200880 202560 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 202559 202560 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 202561 202907 . + . KQ414889.1 exonerate:protein2genome:local exon 202561 202907 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 200539 202907 321 + . alignment_id 14 ; Query AmOr29 ; Align 200539 19 48 ; Align 200591 35 171 ; Align 200765 92 84 ; Align 200852 120 27 ; Align 202563 130 126 ; Align 202689 175 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 310 Query range: 19 -> 241 Target range: 278579 -> 279263 20 : SerIleGlnTrpAsnArgTrpLeuLeuThrProIleGlyAlaTrpPro<->AsnLeuA : 38 |||:!!||| !|||||||||!!!|||! !|||||||||!.!|||||| !:!||| SerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuC 278580 : AGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCT : 278637 39 : rgLysSerArgIleGlyLysCysTyrSerLeuLeuIleSerIleIleCysTyrSerLe : 57 !! !!!!! !:!:! !||| ! !|||:!!:!!:!!:!!:!!||| !!! !! !|| ysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLe 278638 : GCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCT : 278694 58 : uIleGlyPheMetLeuValSerCysSerIlePheLeuMetValGlu<->IleAsnAsn : 75 ||||||||||:!:|||||| !!|||:!!:!:! ! !:!!:!!!!: ! !..!:!! uIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAsp 278695 : GATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGAT : 278751 76 : IleTyrAsnLysLeuLysMetValGlyProLeuSerPhePheValMetThrIleMetL : 95 :!! !!!..|||:!!||||||:!!|||||||||||||||! !..!|||.!!! !!:| LeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrIleL 278752 : CTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCA : 278811 96 : ysTyrTyrPheLeuLeuPheHisGluAsnAspIleArgGluGlyIleGluArgIleGl : 114 ||||||||.!!|||:!!! !.!! ..! ! ||| !!:!! !!:!:.!. !|||.. ysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIleAr 278812 : AATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCG : 278868 115 : uTrpAspTrpLys<-><-><->AsnValLysHisGlnGluAspArgAsnIleMetIle : 130 . !||||||... ::: !:::...:::|||:::|||...||||||! gThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMetArg 278869 : TACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTGAGG : 278925 131 : ThrTyrAlaAsnTyrGlyArgLysLeuAlaPheIleCysPhePhePheMetLeuCysA : 150 ! !|||!.. !||||||...||||||.!!.!! !! ! !||||||! !! !! AspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerG 278926 : GACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCG : 278985 151 : laPheIlePheTyrPheLeuIleGlnPro<->PheGlyGlyGlyLysIleValAspGl : 168 .! :!!|||||| ! !:!:..!||| |||!.!! ! !!! ! :!! !! lyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIleAs 278986 : GCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGA : 279042 169 : yAsnLeuThrPheIleGlnLeuProPheProIleSerIleLeuIleAlaAspValArg : 187 !||| !||| ! ! !...! ! !!|||||||||! ! ! !:!! !||| !||| pAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArg 279043 : CAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCGCGT : 279099 188 : AspSerProTyrAsnGluIleMetLeuSerIleGlnIleLeuThrGlyIleValMetA : 207 !||||||! !||||||:!!! !! !!!:||| !|||.!!!.!.!!|||:!: ThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValLeuT 279100 : ACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTAT : 279159 208 : snAlaIleArgSerAlaIleCysSerValAlaAlaValPheAlaIleHisAlaCysGl : 226 !!:!!:!!! ! !!.! !||||||:!! !|||||||||!.!!!:|||!.!||||| yrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCysGl 279160 : ACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGG : 279216 227 : yGlnMetGlnValLeuMetAsnTrpLeuAsnHisLeuValGluGly : 241 ||||.!.::!:!!|||:!!!.. !|||:!! ! |||:!!!!:||| yGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGly 279217 : GCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGA : 279263 vulgar: AmOr29 19 241 . KQ414889.1 278579 279263 + 310 M 16 48 G 0 3 M 37 111 G 0 3 M 46 138 G 0 9 M 41 123 G 0 3 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278580 279263 310 + . gene_id 15 ; sequence AmOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278580 279263 . + . KQ414889.1 exonerate:protein2genome:local exon 278580 279263 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278580 279263 310 + . alignment_id 15 ; Query AmOr29 ; Align 278580 20 48 ; Align 278631 36 111 ; Align 278745 73 138 ; Align 278892 119 123 ; Align 279018 160 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 289 Query range: 298 -> 388 Target range: 224323 -> 224658 299 : GluTrpAsnProLysGluLeuIleValSerPheThrTyrIleAlaIleIleAlaSerI : 318 ||||||::: ....!.|||! ! !:!! ! ||||||.!! !:!!:!! !|||: GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 319 : leThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlnThrGl : 337 ::|||||||||||||||||||||||||||||||||||||||||||||||||||...:: euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlnValLy 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggtgaa : 224438 338 : u{L} >>>> Target Intron 1 >>>> {ys}ValGlyGluValAlaTyrMet : 345 :{|} 65 bp {||}:::|||::!|||:!!|||||| s{L}-+ +-{ys}IleGlyGlnValSerTyrMet 224439 : a{a}at.........................aa{aa}attggacaAGTGTCGTACATG : 224527 346 : IleGluTrpTyrArgIleArgGlyLysLysLysLeuCysCysValLeuIleIleAlaM : 365 |||!!:|||||||||:!:! !|||!!.|||||||||||||||:!!||||||||||||| IleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaM 224528 : ATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGA : 224587 366 : etSerAsnSerSerIleLysPheThrAlaGlyAsnMetValGluLeuSerIleTyrTh : 384 ||||||||||||||||||||!!.||||||||||||||||||||||||!!!:!! !|| etSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrTh 224588 : TGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCAC : 224644 385 : rPheSerAspVal : 388 ||||.!!|||||| rPheGlyAspVal 224645 : TTTCGGTGACGTA : 224658 vulgar: AmOr29 298 388 . KQ414889.1 224323 224658 + 289 M 39 117 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224658 289 + . gene_id 16 ; sequence AmOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224324 224441 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224441 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224442 224443 . + . intron_id 1 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local intron 224442 224506 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224505 224506 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 224507 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224507 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224658 289 + . alignment_id 16 ; Query AmOr29 ; Align 224324 299 117 ; Align 224509 339 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 246 Query range: 298 -> 398 Target range: 280091 -> 280465 299 : GluTrpAsnProLysGluLeuIleValSerPheThrTyrIleAlaIleIleAlaSerI : 318 ||||||.!.! !!!.!!: !|||! !!!!|||||||||:!! !.!!:!! !|||: GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerL 280092 : GAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTT : 280149 319 : leThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln >>> : 336 !!|||||||||:!!||||||.!!|||||||||||||||:!!:!!:!!|||||| euThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 280150 : TAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt... : 280205 337 : > Target Intron 1 >>>> ThrGluLysValGlyGluValAlaTyrMetIleG : 347 74 bp ! !|||||||||! ! !.!!|||||||||! ++CysLeuLysValGlyValSerThrTyrMetIleA 280206 : ......................agTGCTTAAAAGTCGGCGTGTCAACTTACATGATCG : 280310 348 : luTrpTyrArgIleArgGlyLysLysLysLeuCysCysValLeuIleIleAlaMetSe : 366 !:|||||||||:!:! !||||||||| !! ! !!! :!!||||||.!!|||:!!|| spTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaValSe 280311 : ACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCGTGTC : 280367 367 : rAsnSerSerIleLysPheThrAlaGlyAsnMetValGluLeuSerIleTyrThrPhe : 385 ||||||||||||||||!!.|||||||||!!.!!::!!!!:||||||:!! !!:!||| rAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPhe 280368 : GAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTC : 280424 386 : SerAspValValLysThrSerValAlaPheLeuAsnMet : 398 !!!..!||| !! ! !!:!:!!:!!!:!! !:!!:!! CysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280425 : TGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: AmOr29 298 398 . KQ414889.1 280091 280465 + 246 M 37 111 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280092 280465 246 + . gene_id 17 ; sequence AmOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280092 280465 246 + . alignment_id 17 ; Query AmOr29 ; Align 280092 299 111 ; Align 280277 336 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 209 Query range: 116 -> 265 Target range: 304425 -> 304869 117 : TrpLysAsnValLysHisGlnGluAspArgAsnIleMetIleThrTyrAlaAsnTyrG : 136 !:::!!.!.|||:!! !! ..!||||||.!.!!:|||:!!! !|||!.!.!. | TyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetG 304426 : TATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGG : 304483 137 : lyArgLysLeuAlaPheIleCysPhePhePheMetLeuCysAlaPheIlePheTyrPh : 155 |||||!!.|||.!!.!.|||||| !.!.||||||! ! !!.! !! !.!!||| lyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHi 304484 : GTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCA : 304540 156 : eLeuIleGlnProPheGlyGlyGlyLysIleValAspGly<->AsnLeuThrPheIle : 173 ! !:!!..!! !|||!.! !|||! ! !||||||! ! |||! !|||.!!! ! sThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgThrIleLys 304541 : CACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAA : 304597 174 : GlnLeuProPheProIleSerIleLeuIleAlaAspValArgAspSerProTyrAsnG : 193 ! !||| !!:!|||! !! !! ! !:!! !||||||!:! |||||| ! !!| ProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIleTyrG 304598 : CCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACG : 304657 194 : luIleMetLeuSerIleGlnIleLeuThrGlyIleValMetAsnAlaIleArgSerAl : 212 ||:!::!:! !! !:!!!!. !:!! !||| !|||!!: !!:!!|||! !:!!!. luLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThrAlaGl 304658 : AATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGG : 304714 213 : aIleCysSerValAlaAlaValPheAlaIleHisAlaCysGlyGlnMetGlnValLeu : 231 ! !|||.!!:!!||||||:!!||||||! !|||||||||||||||!!:.!.:!!:!! yAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleVal 304715 : TGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTT : 304771 232 : MetAsnTrpLeuAsnHisLeuValGluGlyArgSerAspMetSerLysLysIleAspA : 251 |||::! ! |||..! !!||||||.!..!!!:!..! |||... ! :!!||| MetSerArgLeuGlyAspLeuValAsnSerLysGlu------SerSerAspLeuAspL 304772 : ATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAA------TCATCTGATTTAGATA : 304825 252 : spArgIleAlaAsnIleValIleGlnHisAspArgIleLeuLys : 265 ! |||:!! !.!.|||||| !!.||| |||||||||!:! ysArgLeuIleGluIleValGluHisHisLeuArgIleLeuArg 304826 : AACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTAAGG : 304869 vulgar: AmOr29 116 265 . KQ414889.1 304425 304869 + 209 M 52 156 G 0 3 M 75 225 G 2 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304426 304869 209 + . gene_id 18 ; sequence AmOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304426 304869 . + . KQ414889.1 exonerate:protein2genome:local exon 304426 304869 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 304426 304869 209 + . alignment_id 18 ; Query AmOr29 ; Align 304426 117 156 ; Align 304585 169 225 ; Align 304810 246 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 208 Query range: 298 -> 388 Target range: 272836 -> 273176 299 : GluTrpAsnProLysGluLeuIleValSerPheThrTyrIleAlaIleIleAlaSerI : 318 ||||||!.! ! ! !!:!!! ! ! !||||||.!! !|||:!! !|||! GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 319 : leThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln >>> : 336 !:|||||||||||||||||| |||||||||||||||:!!:!!.!!|||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 337 : > Target Intron 1 >>>> ThrGluLysValGlyGluValAlaTyrMetIleG : 347 70 bp :::|||:::|||||||||!.!||||||! . ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 348 : luTrpTyrArgIleArgGlyLysLysLysLeuCysCysValLeuIleIleAlaMetSe : 366 !.|||||| !:!!! !|||||| ! ! ||| ! :!!|||||||||:!!! !! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 367 : rAsnSerSerIleLysPheThrAlaGlyAsnMetValGluLeuSerIleTyrThrPhe : 385 !!:! ! !||||||.!!|||||||||!..!!:||| :!!|||:!:||||||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 386 : SerAspVal : 388 .!!|||||| GlyAspVal 273166 : GGCGATGTA : 273176 vulgar: AmOr29 298 388 . KQ414889.1 272836 273176 + 208 M 37 111 5 0 2 I 0 66 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273176 208 + . gene_id 19 ; sequence AmOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273176 208 + . alignment_id 19 ; Query AmOr29 ; Align 272837 299 111 ; Align 273018 336 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 11 -> 230 Target range: 194150 -> 194807 12 : AspTyrLysArgLysThrAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuThrProI : 31 :!!|||||| ! ! |||.!.! !:!!:!!!:! !:! !||||||||||||| AsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProI 194151 : AATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGA : 194208 32 : leGlyAlaTrpProAsnLeuArgLysSerArgIleGlyLysCysTyrSerLeuLeuIl : 50 ||||| !||||||!.. ..! ! |||! ! !! !!:! ! !!!! ! leGlyIleTrpProArg---GluAspSerLeuArgAspArgValArgLeuPheAlaGl 194209 : TCGGTATCTGGCCAAGG---GAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCA : 194262 51 : eSerIleIleCysTyrSerLeuIleGlyPheMetLeuValSerCysSerIlePheLeu : 69 !!!! !:!: !!:!:!!|||!!: !!|||:!:|||||| !! ! !|||!:! ! nThrGlyValValPheAlaLeuMetCysPheLeuLeuValProHisValIleTyrThr 194263 : AACTGGCGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACT : 194319 70 : MetValGluIleAsnAsnIleTyrAsnLysLeuLysMetValGlyProLeuSerPheP : 89 !!!!: !.!.:!!:!: !.. ! :!!|||:!::!!!.! !!! ! !||| TyrPheAspCysGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheS 194320 : TACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCA : 194379 90 : heValMetThrIleMetLysTyrTyrPheLeuLeuPheHisGluAsnAspIleArgGl : 108 !:!!:!!.!!|||!!:|||!:!!:: :!!:!! ! :!!..!!!.!!:|||||| erLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnArgLysGluIleArgPh 194380 : GTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATT : 194436 109 : uGlyIleGluArgIleGluTrpAspTrpLysAsnValLysHisGlnGluAspArgAsn : 127 !!:!: !..!!!:||| !.!.!::!:!:!!|||:!! !:!!|||||||||.!. eCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCysGluGluAspArgGln 194437 : CTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAG : 194493 128 : IleMetIleThrTyrAlaAsnTyrGlyArgLysLeuAlaPheIleCysPhePhePheM : 147 :!:|||! !.!! !|||!!. !|||||| !!!.!! !:!:! !!!. .!! ValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuS 194494 : GTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTT : 194553 148 : etLeuCysAlaPheIlePheTyrPheLeuIleGlnProPheGlyGlyGlyLysIleVa : 166 ! ! !!!.! !:!: ||| !:!!|||! !|||.!. !..!! !!:!||||| erTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluArgIleVa 194554 : CTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGT : 194610 167 : l<->AspGlyAsnLeuThrPheIleGlnLeuProPheProIleSerIleLeuIleAla : 184 | !!:! !||| !||| |||! ||||||!:! !! !!:! !:!!.!! ! lLysGluAspAsnSerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePhe 194611 : CAAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTC : 194667 185 : AspValArgAspSerProTyrAsnGluIleMetLeuSerIleGlnIleLeuThrGlyI : 204 ! :!!..!||||||||| ! !!||||||! !!! ! |||||||||! !.!!! AlaIleGluAspSerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerS 194668 : GCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCA : 194727 205 : leValMetAsnAlaIleArgSerAlaIleCysSerValAlaAlaValPheAlaIleHi : 223 !:!!!!: :!!! !.!!!!!.!|||! !|||:!!!.!|||..!.!! !!!:|| erIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHi 194728 : GCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCA : 194784 224 : sAlaCysGlyGlnMetGlnVal : 230 |..!|||||| !.!.:!!||| sCysCysGlyLeuPheGluVal 194785 : TTGCTGTGGCTTGTTCGAAGTG : 194807 vulgar: AmOr29 11 230 . KQ414889.1 194150 194807 + 205 M 25 75 G 1 0 M 129 387 G 0 3 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194151 194807 205 + . gene_id 20 ; sequence AmOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194151 194807 . + . KQ414889.1 exonerate:protein2genome:local exon 194151 194807 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 194151 194807 205 + . alignment_id 20 ; Query AmOr29 ; Align 194151 12 75 ; Align 194226 38 387 ; Align 194616 167 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 188 Query range: 168 -> 335 Target range: 300189 -> 301797 169 : AsnLeuThrPheIleGlnLeuProPheProIleSerIleLeuIleAlaAspValArgA : 188 |||! !|||!:!! !! !||| !!!:!||| !! ! !! !.!! !|||..!!:! AsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnT 300190 : AATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAA : 300247 189 : spSerProTyrAsnGluIleMetLeuSerIleGlnIleLeuThrGlyIleValMetAs : 207 !|||||| ! !!||||||:::... ...... .!!.!!!.!!!::!!||| ! hrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTy 300248 : CCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTA : 300304 208 : nAlaIleArgSerAlaIleCysSerValAlaAlaValPheAlaIleHisAlaCysGly : 226 ! !:!:! !!!!||| ! !|||:!!||||||:!!|||!.!! !||| !|||||| rAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGly 300305 : CAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGA : 300361 227 : GlnMetGlnValLeuMetAsnTrpLeuAsnHisLeuValGluGlyArgSerAspMetS : 246 |||!!:|||:!!! !||| ! |||.!. !!||||||||| |||!!!! !! GlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGlu---ArgThrGlyGluL 300362 : CAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAG---AGGACGGGAGAGA : 300418 247 : erLysLysIleAspAspArgIleAlaAsnIleValIleGlnHisAspArgIleLeu{L : 265 .! ! ! ! !|||! !:!:!.! !|||||| !.!.|||! !:!:!!|||{! ysAspAspGlyProAspProLeuValValIleValArgAspHisValLysValLeu{A 300419 : AGGACGACGGTCCTGATCCTTTGGTCGTTATCGTTCGAGATCACGTGAAGGTTTTA{A : 300475 266 : y} >>>> Target Intron 1 >>>> {s}PheLeuAlaLeuThrGluArgAla : 273 :} 1110 bp {!} !! !..!! ! !... ! !! r}++ ++{g}AspProCysSerPheArg***Pro 300476 : G}gt.........................ag{A}GACCCGTGTTCCTTCCGTTAGCCA : 301609 274 : LeuGlnGlnIleSerPheValGluPheLeuGlyCysThrAlaAsnMetCysLeuLeuG : 293 ! !!.:!!!!! ||| ... ||| !||| !!!||| ThrPheHisLeuCysAlaValIleLysPheGluSerThrLeuAsnAlaLysPheLeuA 301610 : ACTTTTCATCTCTGCgctgtaattaaatttgaatctACTTTAAATGCAAAGTTTTTAC : 301669 294 : lyTyrTyrLeuIleValGluTrpAsnProLysGluLeuIleValSerPheThrTyrIl : 312 !! !! !.!! !||||||.!. !!..!!: !|||!.!! !!!.|||!:!.! rgValIle***Phe***GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePh 301670 : GAGTAATTTGATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTT : 301726 313 : eAlaIleIleAlaSerIleThrPheAsnIlePheIlePheCysTyrIleGlyGluLeu : 331 !.!!:!::!!.!!|||.!!||||||||||||||||||||||||||||||||||||:!! eThrLeuLeuThrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIle 301727 : CACTCTGTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATT : 301783 332 : ValAlaGluGln : 335 :!!:!!|||||| LeuSerGluGln 301784 : CTTTCCGAACAG : 301797 vulgar: AmOr29 168 335 . KQ414889.1 300189 301797 + 188 M 72 216 G 1 0 M 23 69 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300190 301797 188 + . gene_id 21 ; sequence AmOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300190 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300190 300476 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300190 301797 188 + . alignment_id 21 ; Query AmOr29 ; Align 300190 169 216 ; Align 300406 242 69 ; Align 301588 266 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 298 -> 388 Target range: 206050 -> 206401 299 : GluTrpAsnProLysGluLeuIleValSerPheThrTyrIleAlaIleIleAlaSerI : 318 ||||||.!. !!!..!. !! !!.! !.!...!||||||.!!:!: !||| GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 319 : leThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln >>> : 336 !|||||| !:!!||||||.!.||||||||||||:!!|||:!! !!!:||| ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 337 : > Target Intron 1 >>>> ThrGluLysValGlyGluValAlaTyrMetIleG : 347 81 bp !.!.!. |||||| !..!:!!! !! !:!:. ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 348 : luTrpTyrArgIleArgGlyLysLysLysLeuCysCysValLeuIleIleAlaMetSe : 366 !.|||||||||:!!! !..!!:! ! !! !! ! :!!||||||||||||||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 367 : rAsnSerSerIleLysPheThrAlaGlyAsnMetValGluLeuSerIleTyrThrPhe : 385 ||||! ! !!||||||!!.|||||||||!!.||| !!|||:!!|||:!! !!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 386 : SerAspVal : 388 !!!|||||| ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: AmOr29 298 388 . KQ414889.1 206050 206401 + 180 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 180 + . gene_id 22 ; sequence AmOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 180 + . alignment_id 22 ; Query AmOr29 ; Align 206051 299 111 ; Align 206243 336 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 163 Query range: 334 -> 399 Target range: 254271 -> 254555 335 : GlnThrGluLysValGlyGluValAlaTyrMetIleGluTrpTyrArgIleArgGlyL : 354 ||| ! !|||||||||||||||!.!||||||! !!!:|||||| !:!:! ! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 355 : ysLysLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleLysPheTh : 373 :!!:!! ||| !! :!!|||||||||.!! |||||| ! !:!!:!!.!!|| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 374 : rAlaGlyAsnMetValGluLeuSerIleTyrThrPheSerAsp >>>> Target I : 388 |||||||...::: ...:::|||:!!|||||||||.!!||| 89 rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt............. : 254433 389 : ntron 1 >>>> ValValLysThrSerValAlaPheLeuAsnMetLeu : 399 bp ||||||||||||.!! !!|||!:!|||||||||||| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeu 254434 : ............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTT : 254555 vulgar: AmOr29 334 399 . KQ414889.1 254271 254555 + 163 M 53 159 5 0 2 I 0 85 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254555 163 + . gene_id 23 ; sequence AmOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254272 254430 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254430 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254431 254432 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254431 254519 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254518 254519 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254520 254555 . + . KQ414889.1 exonerate:protein2genome:local exon 254520 254555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254555 163 + . alignment_id 23 ; Query AmOr29 ; Align 254272 335 159 ; Align 254520 388 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 334 -> 394 Target range: 238625 -> 238805 335 : GlnThrGluLysValGlyGluValAlaTyrMetIleGluTrpTyrArgIleArgGlyL : 354 ||| ! !|||||||||||||||!.!||||||! !!!:|||||| !:!:! ! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 355 : ysLysLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleLysPheTh : 373 :!!:!! ||| !! :!!||||||||| ! |||||| ! !:!!||| !!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 374 : rAlaGlyAsnMetValGluLeuSerIleTyrThrPheSerAspValValLysThrSer : 392 |||||||!!.:!::!!.!.:!!|||:!!|||||||||.!!|||||| !:!!|||!:! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 393 : ValAla : 394 :!!||| LeuAla 238798 : CTTGCT : 238805 vulgar: AmOr29 334 394 . KQ414889.1 238625 238805 + 142 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238805 142 + . gene_id 24 ; sequence AmOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238805 142 + . alignment_id 24 ; Query AmOr29 ; Align 238626 335 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 333 -> 388 Target range: 277548 -> 277713 334 : GluGlnThrGluLysValGlyGluValAlaTyrMetIleGluTrpTyrArgIleArgG : 353 ..!||| !:!!|||||||||||||||!.!||||||! .!.|||||| !:!!! !! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 354 : lyLysLysLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleLysPh : 372 !||| ! ! ||| !! :!!|||||||||:!!! |||!:! ||||||.. spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 373 : eThrAlaGlyAsnMetValGluLeuSerIleTyrThrPheSerAspVal : 388 .|||||||||...::::::::::::|||:!:|||||||||.!!|||||| eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspVal 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTA : 277713 vulgar: AmOr29 333 388 . KQ414889.1 277548 277713 + 138 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277713 138 + . gene_id 25 ; sequence AmOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277549 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277713 138 + . alignment_id 25 ; Query AmOr29 ; Align 277549 334 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 259 -> 298 Target range: 224122 -> 224239 260 : HisAspArgIleLeuLysPheLeuAlaLeuThrGluArgAlaLeuGlnGlnIleSerP : 279 !.!...!:! !! !!:!||||||.!!! !||||||!:!||||||||||||:!!|||| ArgSerLysCysCysArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerP 224123 : CGTTCGAAATGTTGCAGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGT : 224180 280 : heValGluPheLeuGlyCysThrAlaAsnMetCysLeuLeuGlyTyrTyrLeuIleVa : 298 ||||||||||||||||||||! ! !|||!!:||||||||||||||||||:!!||||| heValGluPheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleVa 224181 : TCGTGGAATTTCTAGGCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGT : 224237 299 : l : 298 | l 224238 : G : 224239 vulgar: AmOr29 259 298 . KQ414889.1 224122 224239 + 137 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224123 224239 137 + . gene_id 26 ; sequence AmOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224123 224239 . + . KQ414889.1 exonerate:protein2genome:local exon 224123 224239 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224123 224239 137 + . alignment_id 26 ; Query AmOr29 ; Align 224123 260 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 334 -> 393 Target range: 244655 -> 244832 335 : GlnThrGluLysValGlyGluValAlaTyrMetIleGluTrpTyrArgIleArgGlyL : 354 ||| ! !|||||||||||||||!.!||||||! !!!:|||||| !:!:! ! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 355 : ysLysLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleLysPheTh : 373 :!!:!! ||| !! :!!||||||||| ! ||||||! ! !:!!:!!.!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 374 : rAlaGlyAsnMetValGluLeuSerIleTyrThrPheSerAspValValLysThrSer : 392 |||||||!!.:!::!!.!.:!!|||:!!|||||||||.!!|||||| !:!!|||!.! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrLys 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAA : 244827 393 : Val : 393 :!! Leu 244828 : CTT : 244832 vulgar: AmOr29 334 393 . KQ414889.1 244655 244832 + 135 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244832 135 + . gene_id 27 ; sequence AmOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244832 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244832 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244832 135 + . alignment_id 27 ; Query AmOr29 ; Align 244656 335 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 334 -> 388 Target range: 264723 -> 264885 335 : GlnThrGluLysValGlyGluValAlaTyrMetIleGluTrpTyrArgIleArgGlyL : 354 ||| !:!!|||||||||||||||!.!|||||| .!.|||||| !:!!! ! !| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 355 : ysLysLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleLysPheTh : 373 || ! ! ||| ! :!!||||||||| !! |||!:! ! !.!!|||||||| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 374 : rAlaGlyAsnMetValGluLeuSerIleTyrThrPheSerAspVal : 388 |||||||!!.!!::!!.!.:!!|||!!:|||||||||||||||||| rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: AmOr29 334 388 . KQ414889.1 264723 264885 + 134 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264885 134 + . gene_id 28 ; sequence AmOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264885 134 + . alignment_id 28 ; Query AmOr29 ; Align 264724 335 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 333 -> 388 Target range: 283273 -> 283438 334 : GluGlnThrGluLysValGlyGluValAlaTyrMetIleGluTrpTyrArgIleArgG : 353 ..!||| !:!!|||||||||||||||!.!||||||! .!.! !!:! !:!!! !! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 354 : lyLysLysLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleLysPh : 372 !||| ! ! ||| !! :!!|||||||||:!!! |||!:! ||||||.. spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 373 : eThrAlaGlyAsnMetValGluLeuSerIleTyrThrPheSerAspVal : 388 .||||||......:::::::::::!||| |||||||||..!|||||| eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspVal 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTA : 283438 vulgar: AmOr29 333 388 . KQ414889.1 283273 283438 + 109 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283438 109 + . gene_id 29 ; sequence AmOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283438 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283438 109 + . alignment_id 29 ; Query AmOr29 ; Align 283274 334 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 298 -> 335 Target range: 291368 -> 291479 299 : GluTrpAsnProLysGluLeuIleValSerPheThrTyrIleAlaIleIleAlaSerI : 318 ||||||.!. !!..!!:! !|||! !! !!!.||||||:!!.!!:!!:!!.!!|||. GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 319 : leThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln : 335 !!||||||||||||.!.||||||||||||:!!|||||||||:!! !! !||| heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAG : 291479 vulgar: AmOr29 298 335 . KQ414889.1 291368 291479 + 105 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 291479 105 + . gene_id 30 ; sequence AmOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 291479 105 + . alignment_id 30 ; Query AmOr29 ; Align 291369 299 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 290 -> 335 Target range: 305076 -> 305211 291 : LeuLeuGlyTyrTyrLeuIleValGluTrpAsnProLysGluLeuIleValSerPheT : 310 !!!||| |||||| !!!:|||.!. !!...!. !:!! ! ! | PheLeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrT 305077 : TTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAA : 305134 311 : hrTyrIleAlaIleIleAlaSerIleThrPheAsnIlePheIlePheCysTyrIleGl : 329 |||||! !!.!:!!:!: !|||:!!||||||||||||||||||!!.||||||||||| hrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGl 305135 : CATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGG : 305191 330 : yGluLeuValAlaGluGln : 335 ||||:!!:!! !|||:!! yGluIleLeuMetGluLys 305192 : TGAGATTCTTATGGAAAAG : 305211 vulgar: AmOr29 290 335 . KQ414889.1 305076 305211 + 104 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305077 305211 104 + . gene_id 31 ; sequence AmOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305077 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305077 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305077 305211 104 + . alignment_id 31 ; Query AmOr29 ; Align 305077 291 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 335 -> 388 Target range: 305624 -> 305783 336 : ThrGluLysValGlyGluValAlaTyrMetIleGluTrpTyrArgIleArgGlyLysL : 355 !:!...!..|||||| ! !..!!:!||||||...||||||!.!:!!! ! !|||! SerSerSerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysT 305625 : AGCAGTAGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGA : 305682 356 : ysLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleLysPheThrAl : 374 !! !! ! !! !:!!||||||||||||||||||!:!!:! !! !|||.!!!:!|| hrIleHisGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAl 305683 : CGATACATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGC : 305739 375 : aGlyAsnMetValGluLeuSerIleTyrThrPheSerAspVal : 388 ||||!!.:!:|||!!:||||||:!!! !||||||.!!:!!||| aGlyLysValValAspLeuSerLeuSerThrPheGlyAsnVal 305740 : TGGTAAAGTAGTTGATTTATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: AmOr29 335 388 . KQ414889.1 305624 305783 + 103 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305625 305783 103 + . gene_id 32 ; sequence AmOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305625 305783 103 + . alignment_id 32 ; Query AmOr29 ; Align 305625 336 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 291 -> 339 Target range: 297439 -> 297583 292 : LeuGlyTyrTyrLeuIleValGluTrpAsnProLysGluLeuIleValSerPheThrT : 311 ||| |||:::...... !|||!!. !! ! !!::!!||| !!.!! ! ||| LeuLysTyrHisPhePheGlnGlyTrpLysThrHisAspMetIlePheGlyValThrI 297440 : ttaaaatatcatttttttcaggGATGGAAAACTCACGATATGATTTTTGGGGTAACGA : 297497 312 : yrIleAlaIleIleAlaSerIleThrPheAsnIlePheIlePheCysTyrIleGlyGl : 330 ! !!.!.!!!!: !|||||||||||||||||||||:!!!!.|||:!! !||||| leGlyGlyPheMetLeuSerIleThrPheAsnIlePheValLeuCysHisAlaGlyGl 297498 : TCGGCGGTTTCATGCTTTCGATCACTTTTAATATATTCGTATTATGTCATGCAGGTGA : 297554 331 : uLeuValAlaGluGlnThrGluLysVal : 339 ||||:!!!.!|||:!!..! !|||||| uLeuLeuValGluGluValProLysVal 297555 : ACTTCTTGTCGAGGAGGTACCGAAAGTG : 297583 vulgar: AmOr29 291 339 . KQ414889.1 297439 297583 + 101 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297440 297583 101 + . gene_id 33 ; sequence AmOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297440 297583 . + . KQ414889.1 exonerate:protein2genome:local exon 297440 297583 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297440 297583 101 + . alignment_id 33 ; Query AmOr29 ; Align 297440 292 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1611 Query range: 13 -> 411 Target range: 208185 -> 212084 14 : AsnAlaAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuA : 33 ||| !|||||||||||||||||||||||||||||||||||||||||||||||||||! AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 34 : rgThrIleGlyThrTrpProArgSerProAspHisSerTrpLeuGluThrLeuGluHi : 52 :!! !||||||:!!|||||||||||| !|||!.!||||||||||||!.! !:!!|| ysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHi 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCA : 208300 53 : sValCysLeuAsnLeuPheCysTyrGluLeuLeuAlaPheIleLeuIleProCysSer : 71 |:!! !||||||:!!.!! !!:!! ||||||!.!||||||:!!|||||| !.!! sIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGly 208301 : TATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGC : 208357 72 : IleTyrIleIleLeuGluIleLysAspPheTyrAsnGlnLeuLysLeuGlySerAlaL : 91 !!:!:! ||||||! !:!!:!!|||||||||:!!|||||||||:!! !!||||||| MetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaL 208358 : ATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTC : 208417 92 : euSerPhePheLeuMetAlaValMetLysTyrCysValPheIleIleArgGluAspAs : 110 |||||||||||:!!|||||| !!! !|||||| :!!.!.! !:!!||||||! !|| euSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAs 208418 : TGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGA : 208474 111 : pIleArgLysCysValGluLeuIleGluAsnAspTrpLysAsnValArgTyrGlnGlu : 129 |||||||||||||||||||! !:!!||| !||||||!:!||||||..!:!!:!!||| pIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGlu 208475 : CATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAG : 208531 130 : AspArgLysIleMetLeuGluAsnAlaSerPheSerArgArgLeuIleValIleCysG : 149 ||||||||||||||||||!!:||||||||||||:!!|||!:!|||||||||||||||| AspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysG 208532 : GACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCG : 208591 150 : lyThrPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAl : 168 ||.!!|||||||||||||||||||||||||||||||||||||||||||||||||||! lyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAs 208592 : GAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGA : 208648 169 : aLysIleValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProPhePro : 187 !|||:!!||||||||||||||||||||||||||||||||||||||||||||| !!||| pLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValPro 208649 : CAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCT : 208705 188 : LysValLeuLeuAspAlaArgHisSerProIleAsnGluIleCysTyrThrIleGlnL : 207 ||| !!:!!||||||!.!|||:!!||||||:!:|||||||||! !||||||:!!|||| LysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnL 208706 : AAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAAT : 208765 208 : euLeuSerGlyPheValAlaHisAsnIleThrValAlaAlaCysGlyLeuAlaAlaLe : 226 |||||||||||||||||||||||||||||||||||!.!|||||||||||||||||||| euLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLe 208766 : TGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCT : 208822 227 : uLeuAlaIleHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpLeuGluLysLeu : 245 |||||||!!:||||||||||||||||||||||||||||||||||||:!!||||||||| uLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeu 208823 : GCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTG : 208879 246 : ValAspGlyArgLysAsnAspAsnGluAsnLeuAspGlnArgLeuAlaAsnIleValL : 265 ||||||||||||:!!:!!!!:.!.:!!||||||||||||||||||||||||||||||: ValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleValG 208880 : GTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCGTGG : 208939 266 : ysGlnHisValArgIleIle{As} >>>> Target Intron 1 >>>> {n}Ph : 273 !!||||||||||||:!:|||{||} 1536 bp {|}|| luGlnHisValArgValIle{As}++ ++{n}Ph 208940 : AGCAGCATGTTCGAGTGATC{AA}gt.........................ag{T}TT : 210499 274 : eIleAlaLeuThrGluAspLeuLeuHisGluIleSerLeuIleGluValValGlyCys : 292 ||||||||||||||||:!!|||||||||||||||||||||||||||:!!||||||||| eIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGluMetValGlyCys 210500 : TATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAATGGTGGGGTGC : 210556 293 : ThrLeuAsnIleCysPheLeuGlyTyrTyrSerMetMet >>>> Target Intro : 306 |||||||||!!:||||||||||||||||||!!!|||!!: 66 bp ThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210557 : ACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt................. : 210600 307 : n 2 >>>> GluTrpAspSerLysGlnProValSerGlyValThrTyrIleIleLeu : 321 |||||||||||||||.!.|||:!!|||.!!:!!|||||||||:!!||| ++GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValLeu 210601 : ........agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTACTC : 210709 322 : LeuIleSerValThrPheAsnIlePheIlePheCysTyrIleGlyGlnLeuLeuAlaG : 341 |||! !|||||||||||||||||||||||||||||||||||||||:!!:!!||||||| LeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAlaG 210710 : CTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGCTG : 210769 342 : luGln >>>> Target Intron 3 >>>> ThrValLysValGlyGluLysSer : 350 ||||| 999 bp |||||||||||||||||||||||| luGln++ ++ThrValLysValGlyGluLysSer 210770 : AACAggt.........................agACAGTAAAAGTTGGAGAAAAGTCT : 211795 351 : TyrMetIleAspTrpHisArgMetProTrpLysLysSerLeuAlaIleProLeuMetI : 370 |||||||||||||||:!!||||||||| ! ||||||.!!|||!.!:!!|||||||||| TyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValValProLeuMetI 211796 : TACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGATGA : 211855 371 : leSerMetSerHisSerThrThrLysIleThrAlaGlyAsnIleIleGluLeuSerIl : 389 |||||||||||||||||||||||||||||||||||||||||:!!|||! |||||||| leSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleValLeuSerIl 211856 : TCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTTCTTTCAAT : 211912 390 : eSerSerPheGlyAsp >>>> Target Intron 4 >>>> ValIleLysThrS : 399 |||||||||||||||| 104 bp ||||||||||||| eSerSerPheGlyAsp++ ++ValIleLysThrS 211913 : CAGTAGTTTCGGTGACgt.........................agGTTATCAAGACTT : 212046 400 : erValAlaTyrLeuAsnMetLeuArgThrPheThrThr : 411 |||||.!!|||||||||||||||||||||||||||||| erValThrTyrLeuAsnMetLeuArgThrPheThrThr 212047 : CGGTAACATACTTGAACATGCTACGAACATTCACAACC : 212084 vulgar: AmOr18 13 411 . KQ414889.1 208185 212084 + 1611 M 258 774 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 995 3 0 2 M 52 156 5 0 2 I 0 100 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 212084 1611 + . gene_id 1 ; sequence AmOr18 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208186 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208961 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211929 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 211930 211931 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 211930 212033 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 212032 212033 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 212034 212084 . + . KQ414889.1 exonerate:protein2genome:local exon 212034 212084 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208186 212084 1611 + . alignment_id 1 ; Query AmOr18 ; Align 208186 14 774 ; Align 210499 273 99 ; Align 210664 306 111 ; Align 211774 343 156 ; Align 212034 395 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 730 Query range: 15 -> 274 Target range: 221357 -> 222134 16 : AsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuArgThrI : 35 :!!||||||!..:!!:!!!.!!!.!:!|||!:!|||!:! !|||! !|||!:! !!| AspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProI 221358 : GATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGA : 221415 36 : leGlyThrTrpProArgSerProAspHisSerTrpLeuGluThrLeuGluHisValCy : 54 |||||..!||||||!.!||| !!:!! !||| !:!!|||! !! ! :!! ! leGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLe 221416 : TCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 55 : sLeuAsnLeuPheCysTyrGluLeuLeuAlaPheIleLeuIleProCysSerIleTyr : 73 :!!|||:!! !!||||||...|||:!!.!!|||:!!|||:!!|||||||||:!!||| uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 74 : IleIleLeuGluIleLysAspPheTyrAsnGlnLeuLysLeuGlySerAlaLeuSerP : 93 :!:|||||||||:!!:!!||| !!||||||::!:!!|||||| !.!! !!||||||| ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 94 : hePheLeuMetAlaValMetLysTyrCysValPheIleIleArgGluAspAspIleAr : 112 ||! !:!!|||||| !!:!:|||||| !:!!!!.|||:!! !|||:!!|||||||| heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 113 : gLysCysValGluLeuIleGluAsnAspTrpLysAsnValArgTyrGlnGluAspArg : 131 |:!!|||:!!|||! !|||||| ||||||||||||:!!! !|||...:!!|||!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 132 : LysIleMetLeuGluAsnAlaSerPheSerArgArgLeuIleValIleCysGlyThrP : 151 ! ||||||:!!|||||||||! !|||.!!||||||||||||:!!|||||| ! !| AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 152 : heMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAlaLysIl : 170 ||||||||.!!||| :::|||||||||||||||:!!|||!!!!:! !!.!||||| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 171 : eValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProPheProLysVal : 189 | !! !:!!! ! |||:::|||::: ! !:!!|||!:!|||||| !!!:! !! eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 190 : LeuLeuAspAlaArgHisSerProIleAsnGluIleCysTyrThrIleGlnLeuLeuS : 209 :!!:!!|||.!!|||:!!||||||:!!||||||||| !:!:!!:!!|||:!!:!!: IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 210 : erGlyPheValAlaHisAsnIleThrValAlaAlaCysGlyLeuAlaAlaLeuLeuAl : 228 !!||| !:!! !|||!:!|||||| !|||||||||.!!|||!.!|||:!!!!!|| laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 229 : aIleHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpLeuGluLysLeuValAsp : 247 |:!:|||||||||||||||:!!|||:!:|||||||||||||||:!! ! |||:!!:!! aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 248 : GlyArgLysAsnAspAsnGluAsnLeuAspGlnArgLeuAlaAsnIleValLysGlnH : 267 |||||| !:!! !.!.|||:!!|||::!|||:!!|||!!.||||||!!.|||| GlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnH 222052 : GGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAAC : 222111 268 : isValArgIleIleAsnPheIle : 274 |||||||||||:!:.!.!:!:!! isValArgIleLeuGlnTyrVal 222112 : ACGTTCGAATATTGCAGTATGTA : 222134 vulgar: AmOr18 15 274 . KQ414889.1 221357 222134 + 730 M 259 777 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221358 222134 730 + . gene_id 2 ; sequence AmOr18 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221358 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221358 222134 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221358 222134 730 + . alignment_id 2 ; Query AmOr18 ; Align 221358 16 777 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 712 Query range: 13 -> 409 Target range: 284496 -> 287264 14 : AsnAlaAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuA : 33 :!!:!!!..!:: ! !..|||! !! !!:!!:!|||!:!:!!||| !||| !|||! AspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuL 284497 : GATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCA : 284554 34 : rgThrIleGlyThrTrpProArgSerProAspHisSerTrpLeuGluThrLeuGluHi : 52 :! !!||||||..!||||||! !|||! ! ! !!! ||||||! !:!!... ysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSe 284555 : AACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTC : 284611 53 : sValCysLeuAsnLeuPheCysTyrGluLeuLeuAlaPheIleLeuIleProCysSer : 71 !||| !||| |||.!! !!! ! |||:!!!.!|||:!!|||:!!||||||:!! rValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAla 284612 : CGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCT : 284668 72 : IleTyrIleIleLeuGlu<->IleLysAspPheTyrAsnGlnLeuLysLeuGlySerA : 90 :!:! !! !:!:|||!!: ! ! |||.!! !!!..:!!:!!|||:!! !.!! LeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyP 284669 : CTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTC : 284728 91 : laLeuSerPhePheLeuMetAlaValMetLysTyrCysValPheIleIleArgGluAs : 109 !!|||||||||! !:!!||||||!.!!!:||||||! !:!!.!.||| |||! ! roLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGl 284729 : CTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGG : 284785 110 : pAspIleArgLysCysValGluLeuIleGluAsnAsp{Tr} >>>> Target Int : 122 ! ! ||| !!:!!||||||:!! !|||... |||{||} 1012 b yLysIleGlyGlnCysValLysAspIleArgAlaAsp{Tr}++ 284786 : CAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGAC{TG}gt............... : 284828 123 : ron 1 >>>> {p}LysAsnValArgTyrGlnGluAspArgLysIleMetLeuGluA : 137 p {|} ::: !!! :::|||:::|||:::|||||| !!!:! +-{p}LeuSerHisSerGlnGluGluGluArgGluIleMetArgAspS 284829 : ..........ac{G}CTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACA : 285881 138 : snAlaSerPheSerArgArgLeuIleValIleCysGlyThrPheMetTyrGlyGlyVa : 156 :!|||!!!.!!.!!||| !||| :!!.!!|||!.! !|||||||||..!|||! erAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGl 285882 : GCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGG : 285938 157 : lIlePheTyrTyrIleAlaLeuProLeuThrArgAlaLysIleValGluGluGlyGly : 175 !.!!|||||| !! !.!:!!|||||| !! !!.!::: ..!||| !! ! yPhePheTyrThrThrValMetProLeuCysThrValArg---ThrGluIleIleAsp 285939 : ATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGC---ACGGAGATCATCGAC : 285992 176 : AsnLeuThrTyrArgArgLeuValTyrProPheProLysValLeuLeuAspAlaArgH : 195 ||| !||| ||| !! !!.!!:!|||.!! !:::! !||||||||| !!||| AsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgT 285993 : AACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTA : 286052 196 : isSerProIleAsnGluIleCysTyrThrIleGlnLeuLeuSerGlyPheValAlaHi : 214 !|||||| !|||||| ! !!!:|||! !|||:!!!.!|||||| !:! hrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTy 286053 : CCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATA : 286109 215 : sAsnIleThrValAlaAlaCysGlyLeuAlaAlaLeuLeuAlaIleHisAlaCysGly : 233 !::::!!||||||!.!||||||.!!|||||||||:!!!!!!.!!!:|||!.!|||||| rSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGly 286110 : CTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGA : 286166 234 : GlnLeuGlnIleLeuMetSerTrpLeuGluLysLeuValAspGlyArgLysAsnAspA : 253 |||!!!::!||||||:!!!!! !|||!!:||||||||||||||| !|||... ! GlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLysGlyArgL 286167 : CAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGAGGA : 286226 254 : sn<-><->GluAsnLeuAspGlnArgLeuAlaAsnIleValLysGlnHisValArgIl : 270 !. ...!..! !!!:|||||||||!.!:!!|||:!!:!!!!.|||:!!!:!|| ysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLysIl 286227 : AGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGAT : 286283 271 : eIle{As} >>>> Target Intron 2 >>>> {n}PheIleAlaLeuThrGlu : 278 |:!:{..} 408 bp {!}||||||:!!! !! !||| eLeu{Gl}++ ++{y}PheIleSerGlnIleGlu 286284 : ACTG{GG}gt.........................ag{T}TTTATATCGCAAATCGAG : 286715 279 : AspLeuLeuHisGluIleSerLeuIleGluValValGlyCysThrLeuAsnIleCysP : 298 ! ||||||:!!||||||!!!!!!:!!||||||:!!|||||||||||||||||||||| GlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsnIleCysP 286716 : GGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCT : 286775 299 : heLeuGlyTyrTyrSerMetMet >>>> Target Intron 3 >>>> GluTrp : 307 ||||||||||||||! !:!!! ! 80 bp |||||| heLeuGlyTyrTyrLeuLeuThr++ ++GluTrp 286776 : TTTTGGGATATTATTTACTGACGgt.........................agGAATGG : 286882 308 : AspSerLysGlnProValSerGlyValThrTyrIleIleLeuLeuIleSerValThrP : 327 !!:..!!..:!! !!:!!.!! !:!!|||||| !! ||||||:!!||| !!|||| GluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerPheThrP 286883 : GAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCACGT : 286942 328 : heAsnIlePheIlePheCysTyrIleGlyGlnLeuLeuAlaGluGln >>>> Targ : 343 |||||:!!||||||.!!||||||||||||:!!:!!|||:!!|||||| heAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286943 : TCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt......... : 286992 344 : et Intron 4 >>>> ThrValLysValGlyGluLysSerTyrMetIleAspTrpH : 356 74 bp !:!!||||||||| !..!!!!|||||||||||||||: ++CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpT 286993 : ................agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGT : 287103 357 : isArgMetProTrpLysLysSerLeuAlaIleProLeuMetIleSerMetSerHisSe : 375 !!|||:!!||| ! |||! !:!!! !!.!:!: !|||!!:.!!:!!:!!|||:!!|| yrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSe 287104 : ATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTC : 287160 376 : rThrThrLysIleThrAlaGlyAsnIleIleGluLeuSerIleSerSerPheGlyAsp : 394 |:!!! !|||:!!|||||||||!!.||||||!!:||||||:!!||||||||| !!..! rSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSer 287161 : TTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGC : 287217 395 : ValIleLysThrSerValAlaTyrLeuAsnMetLeuArgThrPhe : 409 |||! !! ! !!:!:!!:!!|||! !:!!:!!! ...||| ValSerIleIleAsnLeuSerTyrTyrHisLeuTyrAspAsnPhe 287218 : GTGAGTATCATAAATTTATCCTATTATCATTTGTacgataatttt : 287264 vulgar: AmOr18 13 409 . KQ414889.1 284496 287264 + 712 M 64 192 G 0 3 M 44 132 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 47 141 G 1 0 M 83 249 G 0 6 M 18 54 S 0 2 5 0 2 I 0 404 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284497 287264 712 + . gene_id 3 ; sequence AmOr18 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284497 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284497 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286698 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 4 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 3 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287264 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287264 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284497 287264 712 + . alignment_id 3 ; Query AmOr18 ; Align 284497 14 192 ; Align 284692 78 132 ; Align 285839 123 141 ; Align 285980 171 249 ; Align 286235 254 54 ; Align 286700 273 99 ; Align 286879 306 111 ; Align 287064 343 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 702 Query range: 13 -> 405 Target range: 278549 -> 280465 14 : AsnAlaAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuA : 33 :!!:!!!..!::!!.!..|||! !! !!:!!:!|||!:!:!!||| !||| !|||! AspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuL 278550 : GATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCA : 278607 34 : rgThrIleGlyThrTrpProArgSerProAspHisSerTrpLeuGluThrLeuGluHi : 52 :! !!||||||..!||||||! !|||! ! ! !!! ||||||! !:!!... ysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSe 278608 : AACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTC : 278664 53 : sValCysLeuAsnLeuPheCysTyrGluLeuLeuAlaPheIleLeuIleProCysSer : 71 !||| !||| |||.!! !!! ! |||:!!!.!|||:!!|||:!!||||||:!! rValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAla 278665 : CGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCT : 278721 72 : IleTyrIleIleLeuGlu<->IleLysAspPheTyrAsnGlnLeuLysLeuGlySerA : 90 :!:! !! !:!:|||!!: ! ! |||.!! !!!..:!!:!!|||:!! !.!! LeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyP 278722 : CTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTC : 278781 91 : laLeuSerPhePheLeuMetAlaValMetLysTyrCysValPheIleIleArgGluAs : 109 !!|||||||||! ! !||||||..!!!:||||||! !:!!.!.!!: |||! ! roLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGl 278782 : CTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGG : 278838 110 : pAspIleArgLysCysValGluLeuIleGluAsnAspTrpLys<-><-><->AsnVal : 125 ! ! ||| !!|||||||||.!. !|||...!..||||||... ::: ! yLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyr 278839 : CAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTAT : 278895 126 : ArgTyrGlnGluAspArgLysIleMetLeuGluAsnAlaSerPheSerArgArgLeuI : 145 ||| :::|||:::|||:::|||||| !!!:!:!|||!!!.!!.!!||| !||| ArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuA 278896 : CGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGG : 278955 146 : leValIleCysGlyThrPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuPr : 164 :!!.!! !!!.! !|||||||||..!|||! !:!!|||||| ! !!.!:!!|| laIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetPr 278956 : CGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCC : 279012 165 : oLeuThrArgAlaLysIleValGluGluGlyGlyAsnLeuThrTyrArgArgLeuVal : 183 |||| ! !!.!::: ..!||| !! !||| !||| ||| !! !!.! oLeuPheAlaValArg---ThrGluIleIleAspAsnGluThrValArgSerGlnAla 279013 : GTTGTTCGCAGTACGC---ACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCG : 279066 184 : TyrProPheProLysValLeuLeuAspAlaArgHisSerProIleAsnGluIleCysT : 203 !:!|||.!! !:::! !||||||||| !!||| !|||||| !|||||| PheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValG 279067 : TTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGC : 279126 204 : yrThrIleGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValAlaAlaCysGl : 222 ! !!!:|||! !|||:!!!.!|||||| !:!!::::!!||||||!.!||||||.! lnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSe 279127 : AATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAG : 279183 223 : yLeuAlaAlaLeuLeuAlaIleHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrp : 241 !||| !|||:!!!!!!.!!!:|||!.!|||||||||!!!::!||||||:!!!!! ! rLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLys 279184 : CTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAG : 279240 242 : LeuGluLysLeuValAspGlyArgLysAsnAspAsn<-><->GluAsnLeuAspGlnA : 259 |||!!:||||||:!!|||||| !|||... !!. ...!..! !!!:|||| LeuAspLysLeuIleAspGlyValLysGlyArgLysSerLeuSerThrHisGluGlnA 279241 : CTGGATAAGCTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAAC : 279300 260 : rgLeuAlaAsnIleValLysGlnHisValArgIleIle{As} >>>> Target In : 272 |||||!.!:!!|||:!!:!!!!.|||:!!!:!|||:!:{..} 571 rgLeuGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 279301 : GACTGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt.............. : 279343 273 : tron 1 >>>> {n}PheIleAlaLeuThrGluAspLeuLeuHisGluIleSerLeu : 286 bp {!}||||||:!!! !! !|||! ||||||:!!||||||!!!!!! ++{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPhe 279344 : ...........ag{T}TTTATATCGCAAATCGAGGGGCTCCTGAACGAAATATGTTTC : 279952 287 : IleGluValValGlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrSerMetMet : 306 :!!||||||:!!||||||||||||||||||||||||||| !||||||! !:!:! ! ValGluValIleGlyCysThrLeuAsnIleCysPheLeuThrTyrTyrLeuLeuThr+ 279953 : GTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGACATATTATTTACTCACGg : 280012 307 : >>>> Target Intron 2 >>>> GluTrpAspSerLysGlnProValSerGly : 315 80 bp ||||||!!:..!!!..!. !!:!!.!! ! + ++GluTrpGluGlnAsnAspAlaIleGlyThr 280013 : t.........................agGAATGGGAGCAAAATGACGCTATAGGAACG : 280119 316 : ValThrTyrIleIleLeuLeuIleSerValThrPheAsnIlePheIlePheCysTyrI : 335 !!||||||:!!!!:!!!|||||||||:!!|||||||||:!!||||||.!!||||||| PheThrTyrLeuMetPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrI 280120 : TTCACGTATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACA : 280179 336 : leGlyGlnLeuLeuAlaGluGln >>>> Target Intron 3 >>>> ThrVal : 344 |||||:!!:!!|||:!!|||||| 74 bp !:!! leGlyGluIleLeuSerGluGln++ ++CysLeu 280180 : TCGGTGAAATTCTCTCCGAACaggt.........................agTGCTTA : 280280 345 : LysValGlyGluLysSerTyrMetIleAspTrpHisArgMetProTrpLysLysSerL : 364 |||||||||! !..!!!!|||||||||||||||:!!|||:!!||| !!||||||:!!! LysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaG 280281 : AAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCAC : 280340 365 : euAlaIleProLeuMetIleSerMetSerHisSerThrThrLysIleThrAlaGlyAs : 383 !!.!:!: !|||!!:.!!:!!:!!|||:!!|||:!!! !|||:!!|||||||||!! lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 280341 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 280397 384 : nIleIleGluLeuSerIleSerSerPheGlyAspValIleLysThrSerValAlaTyr : 402 .||||||!!:||||||:!!||||||||| !!..!|||! !! ! !!:!:!!:!!||| sIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 280398 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 280454 403 : LeuAsnMet : 405 ! !:!!:!! TyrHisLeu 280455 : TATCATTTG : 280465 vulgar: AmOr18 13 405 . KQ414889.1 278549 280465 + 702 M 64 192 G 0 3 M 46 138 G 0 9 M 46 138 G 1 0 M 83 249 G 0 6 M 18 54 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278550 280465 702 + . gene_id 4 ; sequence AmOr18 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278550 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278550 279340 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278550 280465 702 + . alignment_id 4 ; Query AmOr18 ; Align 278550 14 192 ; Align 278745 78 138 ; Align 278892 124 138 ; Align 279030 171 249 ; Align 279285 254 54 ; Align 279913 273 99 ; Align 280092 306 111 ; Align 280277 343 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 683 Query range: 15 -> 274 Target range: 217153 -> 217930 16 : AsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuArgThrI : 35 .!.|||:::...:::::::::...::!:!!!:!! !||| !||| !|||!:! !!! GluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProM 217154 : GAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGA : 217211 36 : leGlyThrTrpProArgSerProAspHisSerTrpLeuGluThrLeuGluHisValCy : 54 !:||| !||||||!.!|||! ! ! !!!! ! ! !..!! !:!! :!! ! etGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLe 217212 : TGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACT : 217268 55 : sLeuAsnLeuPheCysTyrGluLeuLeuAlaPheIleLeuIleProCysSerIleTyr : 73 :!!||| !!!.||||||! |||:!!::!|||:!!!!!:!!|||||||||!!:||| uIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyr 217269 : GATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTAC : 217325 74 : IleIleLeuGluIleLysAspPheTyrAsnGlnLeuLysLeuGlySerAlaLeuSerP : 93 :!:.!!||||||:!!:!!|||.!!|||:!!:!!||||||||| !.!! !!|||! !| ValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIleP 217326 : GTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCT : 217385 94 : hePheLeuMetAlaValMetLysTyrCysValPheIleIleArgGluAspAspIleAr : 112 ||! !:!!|||||| !!:!:||||||! ! !.!.|||:!!!.!:!!! |||||||| heCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleAr 217386 : TCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCG : 217442 113 : gLysCysValGluLeuIleGluAsnAspTrpLysAsnValArgTyrGlnGluAspArg : 131 |:!!||||||..! !||||||...||||||!:!|||||||||! !:!!:!!|||||| gGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArg 217443 : CGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGG : 217499 132 : LysIleMetLeuGluAsnAlaSerPheSerArgArgLeuIleValIleCysGlyThrP : 151 :!! |||:!!! !||||||!:!|||.!!|||!:!|||:!!:!!:!!||| ! !| GluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPheP 217500 : GAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCT : 217559 152 : heMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAlaLysIl : 170 ||||||||.!!||| :::|||||||||||||||:!!|||:!!!:! !!.!!:!|| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIl 217560 : TCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAAT : 217616 171 : eValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProPheProLysVal : 189 |:!!..!|||..!||||||||||||!:!! !! !||||||!:!|||||| !!||| ! eLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyr 217617 : TCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTAT : 217673 190 : LeuLeuAspAlaArgHisSerProIleAsnGluIleCysTyrThrIleGlnLeuLeuS : 209 :!!:!!|||.!!|||:!!!!!|||! ||||||||| !:! !:!!||||||:!!: IleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleA 217674 : ATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCG : 217733 210 : erGlyPheValAlaHisAsnIleThrValAlaAlaCysGlyLeuAlaAlaLeuLeuAl : 228 !!||| !:!! !|||...|||||| !|||||||||.!!||||||||| !!!!|| laGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAl 217734 : CTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGC : 217790 229 : aIleHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpLeuGluLysLeuValAsp : 247 |:!!|||||||||||||||:!!:!!:!:||||||!:!||||||:!! ! |||:!!||| aValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAsp 217791 : GGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGAC : 217847 248 : GlyArgLysAsnAspAsnGluAsnLeuAspGlnArgLeuAlaAsnIleValLysGlnH : 267 |||||| !:!! !:!!!:!.!:!!||| |||:!!|||!:!||||||!..|||| GlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnH 217848 : GGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAAC : 217907 268 : isValArgIleIleAsnPheIle : 274 |||||||||||:!!!!.! !:!! isValArgIleLeuLysCysVal 217908 : ACGTTCGGATATTAAAGTGTGTA : 217930 vulgar: AmOr18 15 274 . KQ414889.1 217153 217930 + 683 M 259 777 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217154 217930 683 + . gene_id 5 ; sequence AmOr18 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217154 217930 . + . KQ414889.1 exonerate:protein2genome:local exon 217154 217930 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217154 217930 683 + . alignment_id 5 ; Query AmOr18 ; Align 217154 16 777 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 644 Query range: 15 -> 274 Target range: 226909 -> 227686 16 : AsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuArgThrI : 35 :!!|||:!!.!. !!|||!:!.!.!:!:!!!:!|||||| !||| !|||!:! !!: AspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProL 226910 : GACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCAC : 226967 36 : leGlyThrTrpProArgSerProAspHisSerTrpLeuGluThrLeuGluHisValCy : 54 !!|||! !|||||| !|||! ! ! !||| ! :!!! !! !! ! ! !! euGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLe 226968 : TCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTT : 227024 55 : sLeuAsnLeuPheCysTyrGluLeuLeuAlaPheIleLeuIleProCysSerIleTyr : 73 :!!..!!!!.!!||||||! !|||:!!::!||| |||:!! !! !!.!!:!:||| uMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyr 227025 : GATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTAC : 227081 74 : IleIleLeuGluIleLysAspPheTyrAsnGlnLeuLysLeuGlySerAlaLeuSerP : 93 :!::!!||||||:!:|||! ! !|||||| !||||||:!! !.!! !!:!!|||| ValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerP 227082 : GTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCT : 227141 94 : hePheLeuMetAlaValMetLysTyrCysValPheIleIleArgGluAspAspIleAr : 112 ||||| !|||:!!:!!:!:||||||! !:!!!!.! .!!!.!||||||||||||! hePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLe 227142 : TCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCT : 227198 113 : gLysCysValGluLeuIleGluAsnAspTrpLysAsnValArgTyrGlnGluAspArg : 131 !:!!|||||||||! !|||:!! ||||||||||||:!!||||||! !||||||||| uGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArg 227199 : CGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGA : 227255 132 : LysIleMetLeuGluAsnAlaSerPheSerArgArgLeuIleValIleCysGlyThrP : 151 !!.:!:|||:!! ! !!|||! !!:!.!!|||!:!||||||..!|||||| ! !| AsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPheP 227256 : AACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTT : 227315 152 : heMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAlaLysIl : 170 ||:!:!:!...... :::|||:::||||||!.!:!!|||:!!!.! !!.!!..:! heValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerVa 227316 : TCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGT : 227372 171 : eValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProPheProLysVal : 189 !!.! !|||! !||||||! !!:!|||! !!:!:!! !!:!||||||||||||:!! lAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIle 227373 : TGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATC : 227429 190 : LeuLeuAspAlaArgHisSerProIleAsnGluIleCysTyrThrIleGlnLeuLeuS : 209 :!! !|||!.!|||:!!||||||.!!|||||||||! !!:!:!!:!!|||!!!:!!! IleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValT 227430 : ATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAA : 227489 210 : erGlyPheValAlaHisAsnIleThrValAlaAlaCysGlyLeuAlaAlaLeuLeuAl : 228 !!|||.!!||| !|||..!:!!||| !|||||||||.!!:!!|||||||||||||| hrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAl 227490 : CAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGC : 227546 229 : aIleHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpLeuGluLysLeuValAsp : 247 |:!!|||||||||||||||:!!:!!:!:|||:!!|||||||||! ! ! |||:!!||| aValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAsp 227547 : GGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGAC : 227603 248 : GlyArgLysAsnAspAsnGluAsnLeuAspGlnArgLeuAlaAsnIleValLysGlnH : 267 |||||| !:!! !:!:!!!..||||||.!.|||:!!|||!:!||||||! !!.| GlyArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValThrHisH 227604 : GGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACC : 227663 268 : isValArgIleIleAsnPheIle : 274 |||||||||||:!:!!.! !:!! isValArgIleLeuLysCysVal 227664 : ACGTTCGAATATTGAAGTGTGTA : 227686 vulgar: AmOr18 15 274 . KQ414889.1 226909 227686 + 644 M 259 777 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226910 227686 644 + . gene_id 6 ; sequence AmOr18 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226910 227686 . + . KQ414889.1 exonerate:protein2genome:local exon 226910 227686 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226910 227686 644 + . alignment_id 6 ; Query AmOr18 ; Align 226910 16 777 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 626 Query range: 13 -> 276 Target range: 212845 -> 213634 14 : AsnAlaAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuA : 33 :!!..!!.!|||:!!!!. ::::::...:::::: !! !||| !||| !|||! AspCysThrTyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuL 212846 : GACTGTACCTACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGA : 212903 34 : rgThrIleGlyThrTrpProArgSerProAspHisSerTrpLeuGluThrLeuGluHi : 52 :! !!! ||| !|||||| !!.! !! !! !||| !:!!|||! ! ! ysProThrGlyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIleAl 212904 : AACCAACGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGC : 212960 53 : sValCysLeuAsnLeuPheCysTyrGluLeuLeuAlaPheIleLeuIleProCysSer : 71 ! !! :!!||| ! !!||||||! |||:!!!.!!:!:!!:!!|||||||||||| aArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSer 212961 : TCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGT : 213017 72 : IleTyrIleIleLeuGluIleLysAspPheTyrAsnGlnLeuLysLeuGlySerAlaL : 91 :!:|||:!:.!!|||!!::!!::::::...:::...::::!!:!!||| !.!! !! LeuTyrValPheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIleP 213018 : TTGTACGTGTTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTT : 213077 92 : euSerPhePheLeuMetAlaValMetLysTyrCysValPheIleIleArgGluAspAs : 110 !!:!!|||! !:!! |||:!! !|||||| ! !!!.|||:!!!.!! ||||| heAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAs 213078 : TTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGA : 213134 111 : pIleArgLysCysValGluLeuIleGluAsnAspTrpLysAsnValArgTyrGlnGlu : 129 |||||||! !|||||||||! !!!::!! !!||||||||||||:!!! !:!!:!!||| pIleArgThrCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGlu 213135 : TATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAG : 213191 130 : AspArgLysIleMetLeuGluAsnAlaSerPheSerArgArgLeuIleValIleCysG : 149 |||!:!:!!|||||| ! !||||||||||||.!!!:!|||:!!:!:..!||||||! AspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysA 213192 : GACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTG : 213251 150 : lyThrPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAl : 168 .! !||||||||| !||| !!! ||||||!:!:!!!.!:!!|||:!!!:! !! laPhePheMetTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAs 213252 : CTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGA : 213308 169 : aLysIleValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProPhePro : 187 !|||!!:|||! !|||! ! !|||:!!|||!:!|||!:!:!!||| !||| !! !! pLysMetValAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSer 213309 : TAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCG : 213365 188 : LysValLeuLeuAspAlaArgHisSerProIleAsnGluIleCysTyrThrIleGlnL : 207 !:! !!:!!:!!|||!.!|||:!!||||||:!:|||||||||! !!:! !||||||: ArgPheIleValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnI 213366 : AGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGA : 213425 208 : euLeuSerGlyPheValAlaHisAsnIleThrValAlaAlaCysGlyLeuAlaAlaLe : 226 !!:!!:!!||| ! :!! !||| !|||.!!|||!.!||||||.!!|||||||||:! leIleAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaVa 213426 : TTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGT : 213482 227 : uLeuAlaIleHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpLeuGluLysLeu : 245 !!!!|||:!!|||||||||||||||:!! ||||||||||||||||||||| ! ||| lPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeu 213483 : GTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTG : 213539 246 : ValAspGlyArgLysAsnAspAsnGluAsnLeuAspGlnArgLeuAlaAsnIleValL : 265 :!!|||||||||:!!:!! !:!:!!|||:!!|||.!.|||:!!||| !||||||! IleAspGlyArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleValA 213540 : ATAGACGGTAGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGA : 213599 266 : ysGlnHisValArgIleIleAsnPheIleAlaLeu : 276 !.|||||||||||||||:!:!!.!:::!:! !||| snGlnHisValArgIleLeuLysTrpValGluLeu 213600 : ACCAGCATGTGCGGATACTGAAGTGGGTGGAATTG : 213634 vulgar: AmOr18 13 276 . KQ414889.1 212845 213634 + 626 M 263 789 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212846 213634 626 + . gene_id 7 ; sequence AmOr18 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212846 213634 . + . KQ414889.1 exonerate:protein2genome:local exon 212846 213634 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212846 213634 626 + . alignment_id 7 ; Query AmOr18 ; Align 212846 14 789 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 449 Query range: 0 -> 276 Target range: 232393 -> 233221 1 : MetAsnAlaGluLysLeuMetIleGluGlyLysProProAsnAlaAsnTyrLysAsnA : 20 :!:!.!!.!||| !:!!|||:!:!!:..!...! ! !!.. !||| !! !...| ValThrGlyGluValIleMetLeuAspSerSerArgAspThrLeuAsnAlaThrArgA 232394 : GTCACTGGCGAGGTAATCATGCTGGACTCGTCCCGCGACACGTTGAACGCTACGCGAG : 232451 21 : spLeuSerPheAsnValArgLeuAsnValTrpThrLeuArgThrIleGlyThrTrpPr : 39 ||! !..!!:!!:!:!!!:!:!!||| !||| !|||! ! !!!!:|||.!!||||| spTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpPr 232452 : ACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCC : 232508 40 : oArgSerProAspHisSerTrpLeuGluThrLeuGluHisValCysLeuAsnLeuPhe : 58 |||| ! !!!!: !||| ! !:!! !||| ! |||!..||| ! oArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThr 232509 : GCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACC : 232565 59 : CysTyrGluLeuLeuAlaPheIleLeuIleProCysSerIleTyrIleIleLeuGluI : 78 |||:!!...|||:!! !! ! :!!:!!||||||! !:!:!:!|||:!:!!!||| CysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluA 232566 : TGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAG : 232625 79 : leLysAspPheTyrAsnGlnLeuLysLeuGlySerAlaLeuSerPhePheLeuMetAl : 97 !! !..!.!. ! .!.::!:!!|||! ! !.!! !!:!!||| !|||||||||!. spThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGl 232626 : ACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGG : 232682 98 : aValMetLysTyrCysValPheIleIleArgGluAspAspIleArgLysCysValGlu : 116 !! !:!!!!.|||||| !!!.:!: !!:!! !:!!||||||! ! ! ||||||||| yGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGlu 232683 : TGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAA : 232739 117 : LeuIleGluAsnAspTrpLysAsnValArgTyrGlnGluAspArgLysIleMetLeuG : 136 ! !:!::!!.!.||||||::!||||||!:! ! ! ! !!||| ! :!:||||||: GlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuL 232740 : CAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGA : 232799 137 : luAsnAlaSerPheSerArgArgLeuIleValIleCysGlyThrPheMetTyrGlyGl : 155 !!||||||!.!.!!.!!||| !:!! ! !|||..!!.! !! !|||:!! !|| ysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGl 232800 : AGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGG : 232856 156 : yValIlePheTyrTyrIleAlaLeuProLeuThrArgAlaLysIleValGluGluGly : 174 |||| !! ! !! ! |||!.! ! !||| !! !::!! !.!! !! !! !..! yValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsn 232857 : TGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAAC : 232913 175 : GlyAsnLeuThrTyrArgArgLeuValTyrProPheProLysValLeuLeuAspAlaA : 194 ! !!:!! !:!! !! !||| !! ! !!||| !! ! !|||:!!|||.!!| GluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrA 232914 : GAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCA : 232973 195 : rgHisSerProIleAsnGluIleCysTyrThrIleGlnLeuLeuSerGlyPheValAl : 213 || !||||||! ||||||||| !:!..!:!!|||! !||||||||||||:!!!. rgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleVa 232974 : GATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGT : 233030 214 : aHisAsnIleThrValAlaAlaCysGlyLeuAlaAlaLeuLeuAlaIleHisAlaCys : 232 !:!!::!:!!||||||!.!||||||||||||!.!|||:!!||||||!!:||||||||| lAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCys 233031 : GAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGC : 233087 233 : GlyGlnLeuGlnIleLeuMetSerTrpLeuGluLysLeuValAspGlyArgLysAsnA : 252 |||||||||.!.:!::!!|||||| |||!!: ! |||||||||!.!!:! !.!.! GlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGlyGlnG 233088 : GGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAGG : 233147 253 : spAsnGluAsnLeuAspGlnArgLeuAlaAsnIleValLysGlnHisValArgIleIl : 271 !:.!...! ! !.!.::!!:!|||!.! !||||||:!!!!.|||:!!|||! !:! luGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLe 233148 : AGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATT : 233204 272 : eAsnPheIleAlaLeu : 276 !!..!:!:!::!!:!! uArgTyrLeuSerVal 233205 : AAGGTATTTGTCTGTG : 233221 vulgar: AmOr18 0 276 . KQ414889.1 232393 233221 + 449 M 276 828 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232394 233221 449 + . gene_id 8 ; sequence AmOr18 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232394 233221 . + . KQ414889.1 exonerate:protein2genome:local exon 232394 233221 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232394 233221 449 + . alignment_id 8 ; Query AmOr18 ; Align 232394 1 828 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 409 Query range: 13 -> 271 Target range: 256625 -> 257402 14 : AsnAlaAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuA : 33 !!..!!|||!:!|||!:! !! !..!!:!!:!:!!!:!|||||| !||| !|||! LysThrAsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuL 256626 : AAGACGAATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGA : 256683 34 : rgThrIleGlyThrTrpProArgSerProAspHisSerTrpLeuGluThrLeuGluHi : 52 :! !!||||||.!!||||||! !||| !!..! !!!! |||||| ! !! ysProIleGlyAlaTrpProProSerSerSerThrThrThrLeuGluArgAsnValSe 256684 : AACCTATAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTC : 256740 53 : sValCysLeuAsnLeuPheCysTyrGluLeuLeuAlaPheIleLeuIleProCysSer : 71 :!! !||||||:!! !!||||||! ! !:!! !|||! !||||||||||||! ! rIleValLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIleProCysLeu 256741 : GATCGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGTTTG : 256797 72 : IleTyrIleIleLeuGluIleLysAspPheTyrAsnGlnLeuLysLeuGlySerAlaL : 91 :!!:!!:!!.!!|||!!: ! ! ..!|||||| ::::::||| ... !!: LeuHisValPheLeuAspAspAspSerPheTyrMetLysValLysAsnPheGlyProM 256798 : CTCCATGTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtCCTA : 256857 92 : euSerPhePheLeuMetAlaValMetLysTyrCysValPheIleIleArgGluAspAs : 110 !!||| !!:::!!!!:::! ! !!.||| :!!.!.:!::!!!:!! ! ! || etSerHisTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAs 256858 : TGAGCCATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGA : 256914 111 : pIleArgLysCysValGluLeuIleGluAsnAspTrpLysAsnValArgTyrGlnGlu : 129 ||||||| ! |||||||||! !||||||!..||||||!:!! |||||| :!!:!! pIleArgTyrCysValGluHisIleGluThrAspTrpArgMetValArgArgGluLys 256915 : CATACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAG : 256971 130 : AspArgLysIleMetLeuGluAsnAlaSerPheSerArgArgLeuIleValIleCysG : 149 |||!:!:!!:!:|||:!!:!!||||||!!!|||.!!||| !:!! !..!.!!|||! AspGlnGlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheCysA 256972 : GATCAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCG : 257031 150 : lyThrPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAl : 168 .!.!!.!!||| ! .!!||||||... ::::::::::!!! ! !!|||!.!! !! laAlaIleMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAsnThrGl 257032 : CAGCTATCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACACGGA : 257088 169 : aLysIleValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProPhePro : 187 !! !||| !! !! !..!! !!.. !! ! ||| !||| ! ! !! ! ! uIleIleHisValGlyAsnGluThrThrIleValArgValLeuProValThrValTyr 257089 : GATAATTCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTGTAC : 257145 188 : LysValLeuLeuAspAlaArgHisSerProIleAsnGluIleCysTyrThrIleGlnL : 207 ||| !||||||:!!!.! !!!.||||||! ||||||||| ! !!!:||| LysLysLeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheMetGlnT 257146 : AAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAA : 257205 208 : euLeuSerGlyPheValAlaHisAsnIleThrValAlaAlaCysGlyLeuAlaAlaLe : 226 !! !|||..!.!!:!!||| !!.!! !||||||::! !! !.!!|||||||||:! hrTrpSerSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAlaAlaVa 257206 : CTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGT : 257262 227 : uLeuAlaIleHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpLeuGluLysLeu : 245 !!!!|||! !||||||! !||||||||| :!:||||||||||||:!! !:!!!!! lPheAlaThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGluPhe 257263 : TTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTT : 257319 246 : ValAspGlyArgLysAsnAspAsnGluAsnLeuAsp<->GlnArgLeuAlaAsnIleV : 264 |||:!!! ! !!:!||| ...:::...... :!!!:!:!!!.! |||| ValAsnGluSerArgAsnArgGluLysThrPheProPheLysGlnIleGlyValIleV 257320 : GTGAATGAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGATTG : 257379 265 : alLysGlnHisValArgIleIle : 271 ||:!!!!.|||:!!|||:!::!: alGluHisHisLeuArgValLeu 257380 : TGGAGCATCATTTAAGAGTGCTG : 257402 vulgar: AmOr18 13 271 . KQ414889.1 256625 257402 + 409 M 244 732 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256626 257402 409 + . gene_id 9 ; sequence AmOr18 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256626 257402 . + . KQ414889.1 exonerate:protein2genome:local exon 256626 257402 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256626 257402 409 + . alignment_id 9 ; Query AmOr18 ; Align 256626 14 732 ; Align 257361 258 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 399 Query range: 13 -> 267 Target range: 259745 -> 260507 14 : AsnAlaAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuA : 33 .!..!!!:!!:!! !:! !! !..!!:!!:!:!!!:!!!!||| !||| !|||! GluThrSerPheThrSerHisSerAspTyrSerLeuGlnPheAsnArgTrpPheLeuL 259746 : GAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCCAATTTAATCGATGGTTCCTGA : 259803 34 : rgThrIleGlyThrTrpProArgSerProAspHisSerTrpLeuGluThrLeuGluHi : 52 :! !!||||||.!!||||||! !||| !!..! !!! ! ||||||! !:!! ysProIleGlyAlaTrpProProSerSerSerThrThrArgLeuGluLysIleIleSe 259804 : AACCGATAGGCGCTTGGCCACCTTCATCCTCCACGACCAGACTCGAGAAGATCATCTC : 259860 53 : sValCysLeuAsnLeuPheCysTyrGluLeuLeuAlaPheIleLeuIleProCysSer : 71 !||| !|||! !!!!.!!||||||... !:!! ! !!! !|||||||||||| ! rValIleLeuIlePheIleCysTyrSerThrIleLeuValThrLeuIleProCysVal 259861 : TGTTATCCTGATCTTTATCTGCTACAGTACCATACTGGTCACCCTGATCCCGTGCGTA : 259917 72 : IleTyrIleIleLeuGluIleLysAspPheTyrAsnGlnLeuLysLeuGlySerAlaL : 91 :!!:!!!!::!!||||||! :!!..!!!.|||! :!! !|||:!! !.!! !!| LeuHisMetLeuLeuGluLysGluSerLeuTyrMetLysThrLysValLeuGlyProL 259918 : CTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGAAGGTGCTCGGTCCTC : 259977 92 : euSerPhePheLeuMetAlaValMetLysTyrCysValPheIleIleArgGluAspAs : 110 ||!!! !!::!!!:!:!.! !!!:!!.||| ..!!!.:!::!:|||! || euThrHisTrpPheValGlyCysIleAsnTyrThrThrLeuLeuLeuArgGlyArgAs 259978 : TTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTGTTGAGAGGCAGAGA : 260034 111 : pIleArgLysCysValGluLeuIleGluAsnAspTrpLysAsnValArgTyrGlnGlu : 129 ||||! !!..|||||||||! !:!:||||||||||||!:!! !:!!! ! :!!:!! pIleLeuSerCysValGluHisValGluAsnAspTrpArgIleIleThrArgGluLys 260035 : CATACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGAATTATAACGAGGGAGAAG : 260091 130 : AspArgLysIleMetLeuGluAsnAlaSerPheSerArgArgLeuIleValIleCysG : 149 |||!:!!!.:!:||||||..! !!|||!.!|||.!!||| !:!! !!.! !|||! AspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgTyrValAlaAlaSerCysA 260092 : GATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGATACGTCGCTGCCTCTTGCG : 260151 150 : lyThrPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAl : 168 .!.!!|||:!! ! |||||||||:!:! !!:!! !:!:!.! ! !|||!:!! !! laAlaPheValGlnGlyGlyValLeuCysPheCysLeuValThrValLeuSerThrGl 260152 : CGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGA : 260208 169 : aLysIleValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProPhePro : 187 ! !||| !! !! !..!! !!.. !! ! !!.!! !||| !! ! !! ! ! uValIleGlnValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaValTyr 260209 : GGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTGCCGTGCGCGGTGTAC : 260265 188 : LysValLeuLeuAspAlaArgHisSerProIleAsnGluIleCysTyrThrIleGlnL : 207 |||! !|||:!!:!!!.!!.! !!||||||!!:||||||||| ! !..!:!:|||! LysGluLeuIleAsnValAsnAspSerProMetAsnGluIleValLeuValValGlnP 260266 : AAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGATTGTTCTCGTCGTGCAAT : 260325 208 : euLeuSerGlyPheValAlaHisAsnIleThrValAlaAlaCysGlyLeuAlaAlaLe : 226 !!:!!|||||||||:!!!.!:!!:::! !||||||!.! !! !.!!|||||||||:! heValSerGlyPheIleValAsnSerSerThrValGlyIlePheSerLeuAlaAlaVa 260326 : TCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGT : 260382 227 : uLeuAlaIleHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpLeuGluLysLeu : 245 !|||.!! !||||||||||||||||||.!.:!:||||||..!|||:!! !:!!!!! lLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMetGluTrpIleThrGluPhe 260383 : TCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAATGGATCACGGAGTTT : 260439 246 : ValAspGlyArgLysAsnAspAsnGluAsnLeuAspGlnArgLeuAlaAsnIleValL : 265 ||||||! ! !!:!||| !!.:!!!!. ! ! !:! ! !...:!::!! ValAspGluSerArgAsnArgLysLysLysAlaProPheLysGluIleGlyValIleV 260440 : GTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTCCTTTCAAGGAGATCGGAGTGATTG : 260499 266 : ysGlnHis : 267 :!!||| alGluHis 260500 : TCGAACAT : 260507 vulgar: AmOr18 13 267 . KQ414889.1 259745 260507 + 399 M 254 762 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259746 260507 399 + . gene_id 10 ; sequence AmOr18 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259746 260507 . + . KQ414889.1 exonerate:protein2genome:local exon 259746 260507 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259746 260507 399 + . alignment_id 10 ; Query AmOr18 ; Align 259746 14 762 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 388 Query range: 13 -> 271 Target range: 266610 -> 267387 14 : AsnAlaAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuA : 33 .!.|||||| !!.!:! !..!!:!!:!:!!!:!|||||| !||| !|||! GluAlaAsnLeuAsnSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuL 266611 : GAAGCGAATCTAAACAGTCTGAGCGATTACAGCCTGCAATTGAATCGATGGTTCCTGA : 266668 34 : rgThrIleGlyThrTrpProArgSerProAspHisSerTrpLeuGluThrLeuGluHi : 52 :! !!||||||.!!||||||! !! ! !! ! ||| |||||| !:!!! ysProIleGlyAlaTrpProProLeuSerLeuThrSerLysLeuGluArgIleValSe 266669 : AACCTATAGGCGCTTGGCCGCCGTTGTCACTCACATCTAAACTCGAACGAATCGTTTC : 266725 53 : sValCysLeuAsnLeuPheCysTyrGluLeuLeuAlaPheIleLeuIleProCysSer : 71 ! !..!|||! !:!!.!!|||||| ! !:!! !|||! !:!!|||||||||! ! rTyrAlaLeuIleValIleCysTyrCysSerIleLeuPheThrValIleProCysLeu 266726 : CTACGCTTTGATCGTCATCTGCTACTGCTCCATACTGTTCACCGTAATCCCTTGCTTG : 266782 72 : IleTyrIleIleLeuGluIleLysAspPheTyrAsnGlnLeuLysLeuGlySerAlaL : 91 .!!:!!:!!:!!|||||| !:!!..!.!! !!..:!!:!!|||:!! !.!! !!| PheHisLeuValLeuGluAspGluSerIleArgThrLysValLysValPheGlyProL 266783 : TTTCATCTCGTTCTGGAGGACGAGAGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTC : 266842 92 : euSerPhePheLeuMetAlaValMetLysTyrCysValPheIleIleArgGluAspAs : 110 ||||| !!::!!!:!:!.!! !!!:!!.||| !..!.!.:!::!!|||... ! !! euSerHisTrpPheValGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGl 266843 : TGAGCCATTGGTTCGTCGGAGGAATTAACTACACCACACTGTTGCTACGCAGCAAAGA : 266899 111 : pIleArgLysCysValGluLeuIleGluAsnAspTrpLysAsnValArgTyrGlnGlu : 129 :|||||| |||||||||! !!!::!!!..||||||!:!! !|||! ! ! !||| uIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGlu 266900 : GATACGCGGTTGCGTAGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAG : 266956 130 : AspArgLysIleMetLeuGluAsnAlaSerPheSerArgArgLeuIleValIleCysG : 149 |||!:!:!!:!:||||||:!!||||||!!!.!!.!!||| !:!! !:!!.!!|||! AspLysGlnValMetLeuLysAsnAlaArgIleGlyArgTyrIleAlaIlePheCysA 266957 : GACAAGCAGGTGATGTTGAAGAACGCGAGGATCGGTCGTTACATTGCTATATTCTGCG : 267016 150 : lyThrPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAl : 168 .!.!!|||||| ! !!||||||:!! !|||! !:!: ! ! !!!!!|||! ! laAlaPheMetGlnCysGlyValLeuGlyTyrCysValIleThrAlaPheThrMetGl 267017 : CGGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGTGATAACGGCGTTCACTATGCA : 267073 169 : aLysIleValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProPhePro : 187 !! :!:! !! ! ..!! !!.! !! ! !.!! !||| !! ! !! !! ! nThrValGluValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaValTyr 267074 : GACCGTGGAAGTCGGTAACGAGACTAGGATCGTACATCTGTTGCCCTGTGCAGTTTAC : 267130 188 : LysValLeuLeuAspAlaArgHisSerProIleAsnGluIleCysTyrThrIleGlnL : 207 ||| !:!!:!!! !.! ! !||||||! ||||||||| ! !..! !|||! LysLysMetIleAlaValAspThrSerProThrAsnGluIleValLeuValSerGlnP 267131 : AAGAAGATGATCGCAGTTGATACCAGCCCGACGAACGAGATTGTCCTTGTTTCACAGT : 267190 208 : euLeuSerGlyPheValAlaHisAsnIleThrValAlaAlaCysGlyLeuAlaAlaLe : 226 !!:!!|||||||||:!!!.!:!!:::! !..!|||!.!|||! !.!!|||||||||:! heValSerGlyPheIleValAsnSerSerValValGlyAlaPheSerLeuAlaAlaVa 267191 : TCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGT : 267247 227 : uLeuAlaIleHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpLeuGluLysLeu : 245 !!!!||| !||||||||||||||||||...:!:||||||! !|||:!!:!!:!!!!! lPheAlaAlaHisAlaCysGlyGlnLeuSerValLeuMetMetTrpIleLysGluPhe 267248 : GTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTGATGATGTGGATCAAGGAGTTT : 267304 246 : ValAspGlyArgLysAsnAspAsnGluAsnLeu<->AspGlnArgLeuAlaAsnIleV : 264 |||:!! !! !!:!:!!..!|||:!!|||:!! !.!.!:!:!!!.! :!!| ValAsnArgSerArgAspSerAsnLysAsnValCysPheAspLysIleGlyValValV 267305 : GTGAACCGATCCAGAGATAGCAATAAGAACGTTTGCTTCGATAAGATTGGCGTGGTCG : 267364 265 : alLysGlnHisValArgIleIle : 271 ||:!!!!.|||:!!|||:!!:!: alGluHisHisLeuArgValLeu 267365 : TTGAACATCATCTGAGAGTTTTG : 267387 vulgar: AmOr18 13 271 . KQ414889.1 266610 267387 + 388 M 243 729 G 0 3 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266611 267387 388 + . gene_id 11 ; sequence AmOr18 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266611 267387 . + . KQ414889.1 exonerate:protein2genome:local exon 266611 267387 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266611 267387 388 + . alignment_id 11 ; Query AmOr18 ; Align 266611 14 729 ; Align 267343 257 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 375 Query range: 21 -> 271 Target range: 262846 -> 263599 22 : SerPheAsnValArgLeuAsnValTrpThrLeuArgThrIleGlyThrTrpProArgS : 41 ..!!:!!:!:!!!:!:!!||| !||| !|||!:! !!||||||.!!||||||! !| AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 42 : erProAspHisSerTrpLeuGluThrLeuGluHisValCysLeuAsnLeuPheCysTy : 60 || !!... !||| ! :!!||| !:!! !! !|||! !:!! !!||||| erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 61 : rGluLeuLeuAlaPheIleLeuIleProCysSerIleTyrIleIleLeuGluIleLys : 79 | |||:!! !! !! !:!!||||||! !! !:!!:!!|||:!!|||||| !:!! rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 80 : AspPheTyrAsnGlnLeuLysLeuGlySerAlaLeuSerPhePheLeuMetAlaValM : 99 :!!|||:!!! :!!|||:!!:!! !.!! !!|||.!! !::!!!:!:!.!:!!! AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 100 : etLysTyrCysValPheIleIleArgGluAspAspIleArgLysCysValGluLeuIl : 118 !:!!.||| ! !!!.:!::!!!.!... ! ||||||!:! ||||||:!!! !:! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 119 : eGluAsnAspTrpLysAsnValArgTyrGlnGluAspArgLysIleMetLeuGluAsn : 137 ::!!.!.|||||| ! !|||! ! !||||||!:!:::|||||||||:!!||| lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 138 : AlaSerPheSerArgArgLeuIleValIleCysGlyThrPheMetTyrGlyGlyValI : 157 |||!.!!:!.!!||| !:!! !!.! !|||!.!! !|||||| ! !.!!:!!! AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 158 : lePheTyrTyrIleAlaLeuProLeuThrArgAlaLysIleValGluGluGlyGlyAs : 176 !:! ! ! ! !:!!!.! ! !!!!!|||! ! ! !|||! !!!:! ..!! !!. etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 177 : nLeuThrTyrArgArgLeuValTyrProPheProLysValLeuLeuAspAlaArgHis : 195 ! !! ! |||! !||| !! !||| ! !|||! !:!!:!! !.! ! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 196 : SerProIleAsnGluIleCysTyrThrIleGlnLeuLeuSerGlyPheValAlaHisA : 215 !:!|||! |||||||||! ! !.!!! |||!!!||||||||||||:!!!.! ! AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 216 : snIleThrValAlaAlaCysGlyLeuAlaAlaLeuLeuAlaIleHisAlaCysGlyGl : 234 ! !||||||!.!|||! !|||:!!.!!|||:!!!!!||| !|||||||||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 235 : nLeuGlnIleLeuMetSerTrpLeuGluLysLeuValAspGlyArgLysAsnAspAsn : 253 ||||.!.:!:||||||||||||:!! !:!!!!!|||:!! ! !!:!:!!!!:||| nLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsn 263484 : GTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAAT : 263540 254 : GluAsnLeu<->AspGlnArgLeuAlaAsnIleValLysGlnHisValArgIleIle : 271 :!!|||||| ! ..!:!!!.! ||||||:!!!!.|||:!!|||:!!:!: LysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeu 263541 : AAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTG : 263599 vulgar: AmOr18 21 271 . KQ414889.1 262846 263599 + 375 M 235 705 G 0 3 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 263599 375 + . gene_id 12 ; sequence AmOr18 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262847 263599 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263599 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262847 263599 375 + . alignment_id 12 ; Query AmOr18 ; Align 262847 22 705 ; Align 263555 257 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 358 Query range: 15 -> 281 Target range: 236831 -> 237626 16 : AsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuArgThrI : 35 ||| ! !..! !..!!:!!:!:!!!:!! !||| !|||.!!:!!!:!!:!| AsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerI 236832 : AATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCA : 236889 36 : leGlyThrTrpProArgSerProAspHisSerTrpLeuGluThrLeuGluHisValCy : 54 ||||||||||||||!:!! ! !!...:!! ||||||! ! ! ! ! leGlyThrTrpProGlnPheSerSerAsn------LeuGluArgAsnIleSerArgIl 236890 : TAGGCACATGGCCACAGTTCTCGTCGAAC------CTCGAGAGAAACATCTCTCGAAT : 236940 55 : sLeuAsnLeuPheCysTyrGluLeuLeuAlaPheIleLeuIleProCysSerIleTyr : 73 ||||||:!!.!!|||||| !:!! !||| :!!||||||||||||:!::!! eLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHis 236941 : ATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCAC : 236997 74 : IleIleLeuGluIleLysAspPheTyrAsnGlnLeuLysLeuGlySerAlaLeuSerP : 93 :!!!!:||||||! ! ! !||||||!..:!!:!!|||:!! !.!!:!!|||||| LeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuSerH 236998 : CTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCC : 237057 94 : hePheLeuMetAlaValMetLysTyrCysValPheIleIleArgGluAspAspIleAr : 112 !!:::!!.!...!:!!!!:!..||| !:!!.!.:!::!:|||... ! !||||| isTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleAr 237058 : ACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACG : 237114 113 : gLysCysValGluLeuIleGluAsnAspTrpLysAsnValArgTyrGlnGluAspArg : 131 | ! ! ! !!.!.! !!!:|||!.!||||||!:!!....! :::||| ::: gHisPhePheAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLys 237115 : TCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaa : 237171 132 : LysIleMetLeuGluAsnAlaSerPheSerArgArgLeuIleValIleCysGlyThrP : 151 ::::::||||||:!! !!|||!.!||||||||| ! ! :!! !||| !! !| GluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIleP 237172 : gaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCT : 237231 152 : heMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAlaLysIl : 170 ||!!::!!||||||:!!:!! |||! !:!! ! ! !!! !|||! ! ! :! heIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaSerThrThrMetValVa 237232 : TCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGT : 237288 171 : eValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProPheProLysVal : 189 !|||! ! !..! !!.! !! !! ||| !||| !! |||.!. !|||! ! lValValGlyAsnLysThrThrIleLeuArgValLeuProLeuProMetTyrLysGly 237289 : CGTGGTTGGAAACAAGACTACGATCTTGCGCGTGCTGCCCTTACCAATGTACAAAGGG : 237345 190 : LeuLeuAspAlaArgHisSerProIleAsnGluIleCysTyrThrIleGlnLeuLeuS : 209 |||||| !.! ! !:! !!!!:|||!!:||| ! ! ! !|||!!!|||| LeuLeuProValAspThrAsnThrMetAsnAspIleValValLeuSerGlnPheLeuS 237346 : CTCCTTCCAGTCGATACGAATACTATGAACGACATCGTTGTTTTGTCACAATTTCTCT : 237405 210 : erGlyPheValAlaHisAsnIleThrValAlaAlaCysGlyLeuAlaAlaLeuLeuAl : 228 ||||||||:!!|||:!!|||! !.!!:!!::!!.! .!!|||.!!::! !|||.! erGlyPheIleAlaAsnAsnSerAlaIleSerValIleSerLeuThrSerAlaLeuTh 237406 : CCGGATTTATAGCGAACAACAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAAC : 237462 229 : aIleHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpLeuGluLysLeuVal<-> : 247 ! !||||||! !|||||||||...:!::!!|||! !! !:!!||| ! !!!||| rSerHisAlaSerGlyGlnLeuSerValValMetLeuSerIleGluAspPheValSer 237463 : ATCACACGCGTCTGGCCAGTTGAGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGT : 237519 248 : AspGlyArgLysAsnAspAsnGluAsnLeuAspGlnArgLeuAlaAsnIleValLysG : 266 !!:!.!|||:::!..! !!.!!::!!! ! !.!...!:!! !!!..||||||:!!: GluAlaArgArgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluG 237520 : GAAGCGAGACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGG : 237579 267 : lnHisValArgIleIleAsnPheIleAlaLeuThrGluAspLeuLeu : 281 !!|||:!!|||:!::!:!!.! :!!..!||| !!!: :!!||| luHisLeuArgValLeuLys***ValCysLeuLeuAspLeuIleLeu 237580 : AACATTTGAGAGTGTTGAAGTAAGTATGTTTGTTGGATTTGATTTTG : 237626 vulgar: AmOr18 15 281 . KQ414889.1 236831 237626 + 358 M 29 87 G 2 0 M 200 600 G 0 3 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236832 237626 358 + . gene_id 13 ; sequence AmOr18 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236832 237626 . + . KQ414889.1 exonerate:protein2genome:local exon 236832 237626 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236832 237626 358 + . alignment_id 13 ; Query AmOr18 ; Align 236832 16 87 ; Align 236919 47 600 ; Align 237522 247 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 355 Query range: 10 -> 271 Target range: 289699 -> 290479 11 : LysProProAsnAlaAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValT : 30 :::||| !!|||! !..!|||:!!!..|||:!! !!!:!!.. !!..!||| ! !| ArgProSerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisT 289700 : CGTCCGTCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATT : 289757 31 : rpThrLeuArgThrIleGlyThrTrpProArgSerProAspHis<->SerTrpLeuGl : 48 ||! !|||!:! !!||||||! !!::||| ! ! !..!!.! ||| ! ! !|| rpIleLeuLysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGl 289758 : GGATCTTGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGA : 289814 49 : uThrLeuGluHisValCysLeuAsnLeuPheCysTyrGluLeuLeuAlaPheIleLeu : 67 | ! !! ! |||! |||! !||| ! |||! !..!:!!||| !||||||:!! uArgThrAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIle 289815 : ACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATA : 289871 68 : IleProCysSerIleTyrIleIleLeuGluIleLysAspPheTyrAsnGlnLeuLysL : 87 :!!|||! !||| !:!!:!!:!!!!!... !!!.|||.!. !!!.. :!!||| ValProPheSerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysA 289872 : GTACCGTTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGA : 289931 88 : euGlySerAlaLeuSerPhePheLeuMetAlaValMetLysTyrCysValPheIleIl : 106 ! !.!! !!|||!!!|||! !|||! .!! !!.!.||||||||| !|||! !!! snLeuGlyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMe 289932 : ATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCAT : 289988 107 : eArgGluAspAspIleArgLysCysValGluLeuIleGluAsnAspTrpLysAsnVal : 125 :!:!! ...! ||| !!:::||||||:!!! !||||||!..|||||||||! :!! tLysGlySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeu 289989 : GAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTG : 290045 126 : ArgTyrGlnGluAspArgLysIleMetLeuGluAsnAlaSerPheSerArgArgLeuI : 145 ||| !!:!!!!: !!||| |||||||||..! !!!.!!!!.!.||||||!.!|||| ArgAspGluAspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuI 290046 : CGTGACGAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCA : 290105 146 : leValIleCysGlyThrPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuPr : 164 || !:!:|||!.!! !|||:!!||| !|||! !:!:! !||| !!! !!.!:!!|| leLysLeuCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIlePr 290106 : TAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACC : 290162 165 : oLeuThrArgAlaLysIleValGluGluGlyGlyAsnLeuThrTyrArgArgLeuVal : 183 |||| ! ! !|||! !||| ..!||||||:!!||| !|||! !|||..! oLeuPheSerLysLysSerVal------AsnGlyAsnValThrIleArgProLeuThr 290163 : GTTGTTCTCGAAGAAGAGCGTG------AACGGTAACGTGACTATCAGACCTCTAACT : 290213 184 : TyrProPheProLysValLeuLeuAspAlaArgHisSerProIleAsnGluIleCysT : 203 |||||| ! !:!!! !!!!!!!|||!.!!:! ! |||||| !!|||||| !! TyrProGlyTyrGluGluPhePheAspValGlnLysSerProAlaTyrGluIleValP 290214 : TATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCT : 290273 204 : yrThrIleGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValAlaAlaCysGl : 222 :! !!!:!!.! !:!!! !! !.!.:!!.!! |||||||||:!!||||||! !.! heCysMetHisCysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSe 290274 : TCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAG : 290330 223 : yLeuAlaAlaLeuLeuAlaIleHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrp : 241 !|||.!!.!!:!!!!!|||! !|||.!!|||||||||:!!:!!|||! !! !!!! !! rLeuThrThrIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArg 290331 : TTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGG : 290387 242 : LeuGluLysLeuValAspGlyArgLysAsnAspAsnGluAsnLeuAspGlnArgLeuA : 261 |||||| ! |||..! ! !! !!! ! .!.:!!...:!!..!.!.||||||| LeuGluAspLeuThrLysArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuA 290388 : CTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGG : 290447 262 : laAsnIleValLysGlnHisValArgIleIle : 271 || !:!!|||!.. ||||||..!|||:!: laValValValSerGlyHisValGluIleLeu 290448 : CGGTTGTTGTGAGCGGTCACGTGGAGATCTTG : 290479 vulgar: AmOr18 10 271 . KQ414889.1 289699 290479 + 355 M 34 102 G 0 3 M 127 381 G 2 0 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289700 290479 355 + . gene_id 14 ; sequence AmOr18 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289700 290479 . + . KQ414889.1 exonerate:protein2genome:local exon 289700 290479 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289700 290479 355 + . alignment_id 14 ; Query AmOr18 ; Align 289700 11 102 ; Align 289805 45 381 ; Align 290186 174 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 303 Query range: 305 -> 410 Target range: 219328 -> 219803 306 : GluTrpAspSerLysGlnProValSerGlyValThrTyrIleIleLeuLeuIleSerV : 325 |||||| ! |||!!..!. !..!|||!.!|||||||||||||||||||||||||||: GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 326 : alThrPheAsnIlePheIlePheCysTyrIleGlyGlnLeuLeuAlaGluGln >>> : 343 !:|||||||||||||||||||||||||||||||||:!!:!!:!!||||||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln++ 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAggt... : 219442 344 : > Target Intron 1 >>>> ThrValLysValGlyGluLysSerTyrMetIleA : 354 73 bp |||:::|||||| ||||||||||||! ++CysArgLysIleGlyGluMetSerTyrMetIleG 219443 : ......................agTGtaggaaaattggagaaatgtCGTACATGATCG : 219546 355 : spTrpHisArgMetProTrpLysLysSerLeuAlaIleProLeuMetIleSerMetSe : 373 !:|||:!!|||:!! !! ! ||||||!.!||| !! ! !|||! |||:!!||||| luTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaMetSe 219547 : AATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTATGTC : 219603 374 : rHisSerThrThrLysIleThrAlaGlyAsnIleIleGluLeuSerIleSerSerPhe : 392 |:!!|||:!!! !|||:!:||||||||||||!!::!!|||||||||||||||!!!||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPhe 219604 : GAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCACTTTT : 219660 393 : GlyAsp >>>> Target Intron 2 >>>> ValIleLysThrSerValAlaTy : 402 !||| 87 bp |||:!!||||||:!!|||.!!!: ThrAsp++ ++ValValLysThrAlaValThrPh 219661 : ACCGACgt.........................agGTCGTTAAGACTGCAGTCACGTT : 219777 403 : rLeuAsnMetLeuArgThrPheThr : 410 !||||||:!:|||||||||!!.||| eLeuAsnValLeuArgThrLeuThr 219778 : TCTGAATGTACTACGAACATTGACT : 219803 vulgar: AmOr18 305 410 . KQ414889.1 219328 219803 + 303 M 37 111 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 83 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219803 303 + . gene_id 15 ; sequence AmOr18 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219668 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219668 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219669 219670 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219669 219755 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219754 219755 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219756 219803 . + . KQ414889.1 exonerate:protein2genome:local exon 219756 219803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219803 303 + . alignment_id 15 ; Query AmOr18 ; Align 219329 306 111 ; Align 219513 343 156 ; Align 219756 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 300 Query range: 305 -> 410 Target range: 228247 -> 230518 306 : GluTrpAspSerLysGlnProValSerGlyValThrTyrIleIleLeuLeuIleSerV : 325 ||||||:!! !!|||:!! !..!! !!.!||||||||| ! ||||||:!!||| GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerP 228248 : GAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCT : 228305 326 : alThrPheAsnIlePheIlePheCysTyrIleGlyGlnLeuLeuAlaGluGln >>> : 343 !!|||||||||||||||||||||||||||||||||:!!:!!:!!||||||!!. heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluHis++ 228306 : TTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACgt... : 228361 344 : > Target Intron 1 >>>> ThrValLysValGlyGluLysSerTyrMetIleA : 354 1889 bp ! !|||||||||||||||||||||||||||! ++CysArgLysValGlyGluLysSerTyrMetIleG 228362 : ......................agTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCG : 230281 355 : spTrpHisArgMetProTrpLysLysSerLeuAlaIleProLeuMetIleSerMetSe : 373 !:|||:!!|||:!: !! ! !!.|||!.!|||..! ! !|||!!:|||:!!||||| luTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 230282 : AATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTC : 230338 374 : rHisSerThrThrLysIleThrAlaGlyAsnIleIleGluLeuSerIleSerSerPhe : 392 |:!!!!!:!!||||||.!!||||||||||||!!::!!|||||||||:!!!:!!!!||| rAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnThrPhe 230339 : CAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACACTTTC : 230395 393 : GlyAsp >>>> Target Intron 2 >>>> ValIleLysThrSerValAlaTy : 402 .!!||| 67 bp |||:!!|||||||||:!!!.!!: SerAsp++ ++ValValLysThrSerMetGlyPh 230396 : AGCGACgt.........................agGTCGTTAAAACGTCCATGGGTTT : 230492 403 : rLeuAsnMetLeuArgThrPheThr : 410 !||||||||||||||||||.!.||| eLeuAsnMetLeuArgThrLeuThr 230493 : CTTAAACATGCTACGAACACTGACG : 230518 vulgar: AmOr18 305 410 . KQ414889.1 228247 230518 + 300 M 37 111 5 0 2 I 0 1885 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228248 230518 300 + . gene_id 16 ; sequence AmOr18 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230403 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230403 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 230404 230405 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 230404 230470 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 230469 230470 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230471 230518 . + . KQ414889.1 exonerate:protein2genome:local exon 230471 230518 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228248 230518 300 + . alignment_id 16 ; Query AmOr18 ; Align 228248 306 111 ; Align 230248 343 156 ; Align 230471 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 277 Query range: 270 -> 395 Target range: 234518 -> 235147 271 : IleAsnPheIleAlaLeuThrGluAspLeuLeuHisGluIleSerLeuIleGluValV : 290 .!!!:!|||||| ! !! !|||:!!:!!:!!:!! !|||!!!|||:!!|||:!!| PheSerPheIleArgAsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuV 234519 : TTCAGTTTTATACGGAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGG : 234576 291 : alGlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrSerMetMet >>>> Targ : 306 |||||||||||||||||!!:|||.!.|||! !||||||! !:!:! ! alGlyCysThrLeuAsnMetCysMetLeuGluTyrTyrLeuLeuThr++ 234577 : TAGGATGCACGTTGAACATGTGCATGCTCGAGTATTATTTACTCACGgt......... : 234626 307 : et Intron 1 >>>> GluTrpAspSerLysGlnProValSerGlyValThrTyrI : 319 189 bp ||| ! ||||||::: ::::!! :!!|||: ++Glu---LysSerLysGluLysLeuAla------SerTyrV 234627 : ................agGAA---AAgtcgaaggaaaaattagCT------TCATACG : 234843 320 : leIleLeuLeuIleSerValThrPheAsnIlePheIlePheCysTyrIleGlyGlnLe : 338 !!|||:!!! !:!:|||:!!|||||||||||||||||||||||||||||||||:!! alIleValTyrValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluTh 234844 : TCATCGTGTACGTGTCCATGACATTtaatatattcatattttgttACATCGGAGAGAC : 234900 339 : uLeuAlaGluGln >>>> Target Intron 2 >>>> ThrValLysValGlyG : 348 !|||.!!|||||| 74 bp !..!|||||||||| rLeuThrGluGln++ ++CysThrLysValGlyG 234901 : GCTTACAGAGCAGgt.........................agTGTACCAAAGTCGGAG : 235004 349 : luLysSerTyrMetIleAspTrpHisArgMetProTrpLysLysSerLeuAlaIlePr : 367 ||||| !||||||! !!!:|||:!!|||:!:||| |||! :!!|||!.!:!: luLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuVa 235005 : AAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGT : 235061 368 : oLeuMetIleSerMetSerHisSerThrThrLysIleThrAlaGlyAsnIleIleGlu : 386 !:!!!!:||||||! !||| !! !..!! !|||||||||||||||!!..!!:!!:!! lMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheLeuGln 235062 : AATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAA : 235118 387 : LeuSerIleSerSerPheGlyAspVal : 395 :!!|||:!!:!!!!!|||||||||||| MetSerValAlaThrPheGlyAspVal 235119 : ATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: AmOr18 270 395 . KQ414889.1 234518 235147 + 277 M 35 105 5 0 2 I 0 185 3 0 2 M 1 3 G 1 0 M 7 21 G 2 0 M 26 78 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234519 235147 277 + . gene_id 17 ; sequence AmOr18 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234519 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234519 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234519 235147 277 + . alignment_id 17 ; Query AmOr18 ; Align 234519 271 105 ; Align 234813 306 3 ; Align 234816 308 21 ; Align 234837 317 78 ; Align 234989 343 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 268 Query range: 117 -> 271 Target range: 304413 -> 304866 118 : IleGluAsnAspTrpLysAsnValArgTyrGlnGluAspArgLysIleMetLeuGluA : 137 :!!...!.!! !:::!!.!.|||..!! !! ..!||||||:!!!!:||||||:!! LeuSerThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysT 304414 : CTCTCTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAAT : 304471 138 : snAlaSerPheSerArgArgLeuIleValIleCysGlyThrPheMetTyrGlyGlyVa : 156 !!!.!..!.!..!!|||!.!|||! :!!||||||!.!! !||||||||| !|||! yrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGl 304472 : ACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGG : 304528 157 : lIlePheTyrTyrIleAlaLeuProLeuThrArgAlaLysIleValGluGluGlyGly : 175 !! !.!!|||:!!! !.!:!!! !!!!.!!! !!.!! ! !|||!!:||| ! yThrIleTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGlu---Tyr 304529 : CACCATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAG---TAT : 304582 176 : AsnLeuThrTyrArgArgLeuValTyrProPheProLysValLeuLeuAspAlaArgH : 195 |||! !||| !!:!! !|||||||||||| ! !!..!.!|||!!!|||!.!!:! AsnArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnT 304583 : AATCGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAA : 304642 196 : isSerProIleAsnGluIleCysTyrThrIleGlnLeuLeuSerGlyPheValAlaHi : 214 ||||||||| !!|||:!: !||| !:!!!!.! !:!!!!!|||!:!||| !:! hrSerProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTy 304643 : CAAGCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTA : 304699 215 : sAsnIleThrValAlaAlaCysGlyLeuAlaAlaLeuLeuAlaIleHisAlaCysGly : 233 !::!||||||!.!!.!|||||||||||||||||||||!!!|||! !|||||||||||| rSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGly 304700 : TTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGA : 304756 234 : GlnLeuGlnIleLeuMetSerTrpLeuGluLysLeuValAspGlyArgLysAsnAspA : 253 |||:!!.!.|||:!!|||||| ! |||! ! ||||||:!!.!!!:! !!:: GlnIleAspIleValMetSerArgLeuGlyAspLeuValAsnSerLys------GluS 304757 : CAAATTGATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAA------GAAT : 304810 254 : snGluAsnLeuAspGlnArgLeuAlaAsnIleValLysGlnHisValArgIleIle : 271 ::...:!!||||||:!!|||||| !.!.||||||:!!!!.|||:!!||||||:!! erSerAspLeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIleLeu 304811 : CATCTGATTTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTA : 304866 vulgar: AmOr18 117 271 . KQ414889.1 304413 304866 + 268 M 56 168 G 1 0 M 75 225 G 2 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304414 304866 268 + . gene_id 18 ; sequence AmOr18 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304414 304866 . + . KQ414889.1 exonerate:protein2genome:local exon 304414 304866 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 304414 304866 268 + . alignment_id 18 ; Query AmOr18 ; Align 304414 118 168 ; Align 304582 175 225 ; Align 304807 252 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 251 Query range: 302 -> 395 Target range: 224314 -> 224658 303 : SerMetMetGluTrpAspSerLysGlnProValSerGlyValThrTyrIleIleLeuL : 322 ..!.!....||||||...|||....!. !..!|||!.!|||||||||.!!||||||| GlnPheGlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuL 224315 : CAATTTCaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTAC : 224372 323 : euIleSerValThrPheAsnIlePheIlePheCysTyrIleGlyGlnLeuLeuAlaGl : 341 ||!!:|||:::|||||||||||||||||||||||||||||||||:!!|||:!!||||| euMetSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGl 224373 : TCATGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGA : 224429 342 : uGln{Th} >>>> Target Intron 1 >>>> {r}ValLysValGlyGluLys : 349 ||||{..} 65 bp {!} |||:::|||::! ! uGln{Va}+- -+{l}GluLysIleGlyGlnVal 224430 : Acag{gt}ga.........................tg{t}gaaaaaattggacaAGTG : 224518 350 : SerTyrMetIleAspTrpHisArgMetProTrpLysLysSerLeuAlaIleProLeuM : 369 ||||||||||||||||||:!!|||:!! !! ! !!.|||!.!|||..! ! !|||! SerTyrMetIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuI 224519 : TCGTACATGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGA : 224578 370 : etIleSerMetSerHisSerThrThrLysIleThrAlaGlyAsnIleIleGluLeuSe : 388 !:|||:!!||||||:!!|||:!!! !|||:!:||||||||||||!!::!!||||||!! leIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCy 224579 : TAATCGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTG : 224635 389 : rIleSerSerPheGlyAspVal : 395 !:!!!!!!!!|||||||||||| sLeuThrThrPheGlyAspVal 224636 : TCTAACCACTTTCGGTGACGTA : 224658 vulgar: AmOr18 302 395 . KQ414889.1 224314 224658 + 251 M 40 120 S 0 2 5 0 2 I 0 61 3 0 2 S 1 1 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224315 224658 251 + . gene_id 19 ; sequence AmOr18 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224315 224436 . + . KQ414889.1 exonerate:protein2genome:local exon 224315 224436 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224437 224438 . + . intron_id 1 ; splice_site "ga" KQ414889.1 exonerate:protein2genome:local intron 224437 224501 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224500 224501 . + . intron_id 0 ; splice_site "tg" KQ414889.1 exonerate:protein2genome:local cds 224502 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224502 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224315 224658 251 + . alignment_id 19 ; Query AmOr18 ; Align 224315 303 120 ; Align 224503 344 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 246 Query range: 175 -> 344 Target range: 300189 -> 301803 176 : AsnLeuThrTyrArgArgLeuValTyrProPheProLysValLeuLeuAspAlaArgH : 195 |||! !||||||!:!! !|||!.!|||||| ! ! ! !!!!:!!|||.!!!:! AsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnT 300190 : AATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAA : 300247 196 : isSerProIleAsnGluIleCysTyrThrIleGlnLeuLeuSerGlyPheValAlaHi : 214 !||||||! ! !!|||||| ::: ...... .!!:!!!.!.!.:!! !:! hrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTy 300248 : CCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTA : 300304 215 : sAsnIleThrValAlaAlaCysGlyLeuAlaAlaLeuLeuAlaIleHisAlaCysGly : 233 !|||:!:|||..!||||||! !.!!|||||||||:!!!!!!.!! !||| !|||||| rAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGly 300305 : CAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGA : 300361 234 : GlnLeuGlnIleLeuMetSerTrpLeuGluLysLeuValAspGlyArgLysAsnAspA : 253 |||:!!||||||! !|||:!! ! |||||| ! ||||||!!: |||! !...!!:! GlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGlu---ArgThrGlyGluL 300362 : CAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAG---AGGACGGGAGAGA : 300418 254 : snGluAsnLeuAspGlnArgLeuAlaAsnIleValLysGlnHisValArgIleIle{A : 272 !.!!::!! ! !.!.! !|||!.! !||||||::!.!.||||||!:!:!!:!!{! ysAspAspGlyProAspProLeuValValIleValArgAspHisValLysValLeu{A 300419 : AGGACGACGGTCCTGATCCTTTGGTCGTTATCGTTCGAGATCACGTGAAGGTTTTA{A : 300475 273 : s} >>>> Target Intron 1 >>>> {n}PheIleAlaLeuThrGluAspLeu : 280 .} 1110 bp {.} ! ..!! ! !... ! ! ! r}++ ++{g}AspProCysSerPheArg***Pro 300476 : G}gt.........................ag{A}GACCCGTGTTCCTTCCGTTAGCCA : 301609 281 : LeuHisGluIleSerLeuIleGluValValGlyCysThrLeuAsnIleCysPheLeuG : 300 ! !.!.:!!!!! ::: ||||||||| ! |||||| ThrPheHisLeuCysAlaValIleLysPheGluSerThrLeuAsnAlaLysPheLeuA 301610 : ACTTTTCATCTCTGCgctgtaattaaatttgaatctACTTTAAATGCAAAGTTTTTAC : 301669 301 : lyTyrTyrSerMetMetGluTrpAspSerLysGlnProValSerGlyValThrTyrIl : 319 !! !!!!.!. !||||||.!.!:!!...!. !!:!!:!! !:!!|||!:!.! rgValIle***Phe***GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePh 301670 : GAGTAATTTGATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTT : 301726 320 : eIleLeuLeuIleSerValThrPheAsnIlePheIlePheCysTyrIleGlyGlnLeu : 338 !! !||||||! ||| !!|||||||||||||||||||||||||||||||||:!!:!! eThrLeuLeuThrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIle 301727 : CACTCTGTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATT : 301783 339 : LeuAlaGluGlnThrVal : 344 |||:!!||||||..!:!! LeuSerGluGlnValLeu 301784 : CTTTCCGAACAGGTACTT : 301803 vulgar: AmOr18 175 344 . KQ414889.1 300189 301803 + 246 M 72 216 G 1 0 M 23 69 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300190 301803 246 + . gene_id 20 ; sequence AmOr18 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300190 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300190 300476 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301803 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300190 301803 246 + . alignment_id 20 ; Query AmOr18 ; Align 300190 176 216 ; Align 300406 249 69 ; Align 301588 273 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 221 Query range: 17 -> 218 Target range: 294672 -> 295275 18 : LysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuArgThrIleGlyT : 37 !:!||||||:!!:!! !!:!:!!!:!! ! ! ! !! !|||!:! !!|||||| ArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyL 294673 : AGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTC : 294730 38 : hrTrpProArgSerProAspHis<->SerTrpLeuGluThrLeuGluHisValCysLe : 55 !||||||! !! ! !..!||| ||| |||.!.! !:!! :!! !|| euTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLe 294731 : TTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCT : 294787 56 : uAsnLeuPheCysTyrGluLeuLeuAlaPheIleLeuIleProCysSerIleTyrIle : 74 |! ! !!::||| ! !:!! !|||:!!|||:!:||||||.!! !!:! ! uIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCys 294788 : GATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGT : 294844 75 : IleLeuGluIleLysAspPheTyrAsnGlnLeuLysLeuGlySerAlaLeuSerPheP : 94 :!!!!!.!.:!:|||::: ::!:!!|||||| !.!! !!:!! !!:!! ValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrS 294845 : GTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACT : 294904 95 : heLeuMetAlaValMetLysTyrCysValPheIleIleArgGluAspAspIleArgLy : 113 !:!!:!::!!:!!:!:!:!||| !! !.!.:!!:!:!:! ! !! .!!!:! ! erMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHi 294905 : CTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCA : 294961 114 : sCysValGluLeuIleGluAsnAspTrpLysAsnValArgTyrGlnGluAspArgLys : 132 |||:!!||| !|||||||||||||||||| :!! ! !!! !||| !!||| ! sCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAla 294962 : TTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCG : 295018 133 : IleMetLeuGluAsnAlaSerPheSerArgArgLeuIleValIleCysGlyThrPheM : 152 ||||||:!!:!!||||||! ! !!!!!!:!|||:!!! !||| !! ! !! !.!.! IleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleI 295019 : ATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAA : 295078 153 : etTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAlaLysIleVa : 171 !:|||.!!..!!.!:!:! |||:!! ! !:::|||... :::... :! leTyrSerSerAlaValSerTyrHisAlaIleValProPhePhe---SerAsnAlaLe 295079 : TCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttt---tcaaacgctTT : 295132 172 : lGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProPheProLysValLeu : 190 !|||.!. ! !||| !||| !||| !||| ! !||| ! !:!!:!!!!! uGluAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPhe 295133 : GGAGAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTC : 295189 191 : LeuAspAlaArgHisSerProIleAsnGluIleCysTyrThrIleGlnLeuLeuSerG : 210 :!!|||||| ! !||||||! ! !!|||||| ||| !! !!!:!!! !. ValAspAlaTyrSerSerProThrTyrGluIleIleArgThrHisLeuPheValTyrS 295190 : GTAGACGCTTATTCCAGTCCTACCTACGAGATCATAAGAACTCATCTCTTTGTTTACT : 295249 211 : lyPheValAlaHisAsnIleThrVal : 218 .!||| !!!.!:!!!!.! ! !||| erPhePheValAsnLysThrGlyVal 295250 : CGTTCTTCGTCAACAAAACTGGTGTC : 295275 vulgar: AmOr18 17 218 . KQ414889.1 294672 295275 + 221 M 27 81 G 0 3 M 122 366 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294673 295275 221 + . gene_id 21 ; sequence AmOr18 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294673 295275 . + . KQ414889.1 exonerate:protein2genome:local exon 294673 295275 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294673 295275 221 + . alignment_id 21 ; Query AmOr18 ; Align 294673 18 81 ; Align 294757 45 366 ; Align 295123 168 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 201 Query range: 181 -> 287 Target range: 202688 -> 203005 182 : LeuValTyrProPheProLysValLeuLeuAspAlaArgHisSerProIleAsnGluI : 201 :!!..!!:! !!||| !! ! !!:!!:!!|||!.!|||:!!||||||:!:||||||| ValThrPheSerPheSerGlyPheIleIleAspValArgTyrSerProValAsnGluI 202689 : GTGACGTTCTCCTTCTCAGGATTTATCATTGATGTTAGATACAGTCCTGTGAACGAGA : 202746 202 : leCysTyrThrIleGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValAlaAl : 220 ||! !!:!:!!|||!:!:!!:!!:!!! !.!!:!! !|||..!:!!||||||!.!|| lePhePheSerIleArgIleValAlaValIleLeuIleHisGlyValThrValGlyAl 202747 : TCTTCTTCTCGATTCGAATCGTAGCTGTCATCCTAATTCACGGTGTCACTGTAGGAGC : 202803 221 : aCysGlyLeuAlaAlaLeuLeuAlaIleHisAlaCysGlyGlnLeuGlnIleLeuMet : 239 |||| !!|||.!!||||||!!!|||:!!|||! !|||||||||:!!.!.:!!|||||| aCysCysLeuThrAlaLeuPheAlaValHisAspCysGlyGlnMetAspValLeuMet 202804 : TTGTTGCTTGACAGCGTTGTTTGCGGTTCACGATTGCGGCCAGATGGACGTTTTGATG : 202860 240 : SerTrpLeuGluLysLeuValAspGlyArgLysAsnAspAsnGlu--AsnLeuAspGl : 258 :!!||||||||| ! |||:!!||||||||| :::|||! ...##|||:!!:!! AlaTrpLeuGluHisLeuMetAspGlyArg---SerAspMetSer##AsnValAsnGl 202861 : GCCTGGCTGGAACATTTGATGGATGGTCGT---TCGGATATGAGTAAAATGTGAATGG : 202916 259 : nArgLeuAlaAsnIleValLysGlnHisValArgIleIleAsnPheIleAlaLeuThr : 277 |||:!!!.!!.!||||||!..||||||:!!||||||:!:!!.! !:!:! !! ! !! yArgMetValThrIleValSerGlnHisIleArgIleLeuLysCysValGluHisPro 202917 : CAGAATGGTGACCATCGTGAGCCAACACATACGGATACTGAAATGTGTGGAACATCCT : 202973 278 : GluAspLeuLeuHisGluIleSerLeuIle : 287 .!....! !! !||| ! ||||||:!: AsnSerArgCysHisCysArgSerLeuLeu 202974 : AATTCACGGTGTCACTGTAGGAGCTTGTTG : 203005 vulgar: AmOr18 181 287 . KQ414889.1 202688 203005 + 201 M 68 204 G 1 0 M 4 12 F 0 2 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202689 203005 201 + . gene_id 22 ; sequence AmOr18 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202689 203005 . + . KQ414889.1 exonerate:protein2genome:local exon 202689 203005 . + . insertions 0 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local similarity 202689 203005 201 + . alignment_id 22 ; Query AmOr18 ; Align 202689 182 204 ; Align 202893 251 12 ; Align 202907 255 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 337 -> 395 Target range: 214848 -> 215022 338 : LeuLeuAlaGluGlnThrValLysValGlyGluLysSerTyrMetIleAspTrpHisA : 357 :!!:!! !:!!||| ! !|||||||||||| !||||||||||||!!:|||:!!| IleMetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrA 214849 : ATTATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACC : 214906 358 : rgMetProTrpLysLysSerLeuAlaIleProLeuMetIleSerMetSerHisSerTh : 376 ||:!!||| ! !!.|||!.!|||..! ! !|||!!:!!::!!||||||:!!|||:! rgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSe 214907 : GATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATC : 214963 377 : rThrLysIleThrAlaGlyAsnIleIleGluLeuSerIleSerSerPheGlyAspVal : 395 !..!|||.!!||||||||||||!!::!!|||||||||||||||!!!|||.!!..!||| rValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214964 : CGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215020 vulgar: AmOr18 337 395 . KQ414889.1 214848 215022 + 161 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214849 215022 161 + . gene_id 23 ; sequence AmOr18 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214849 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214849 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214849 215022 161 + . alignment_id 23 ; Query AmOr18 ; Align 214849 338 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 297 -> 342 Target range: 305076 -> 305211 298 : PheLeuGlyTyrTyrSerMetMetGluTrpAspSerLysGlnProValSerGlyValT : 317 |||||| ||| ..!!!:|||!!:|||!...!. !!|||||| !..!| PheLeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrT 305077 : TTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAA : 305134 318 : hrTyrIleIleLeuLeuIleSerValThrPheAsnIlePheIlePheCysTyrIleGl : 336 |||||! !:!:|||||||||||||||||||||||||||||||||!!.||||||||||| hrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGl 305135 : CATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGG : 305191 337 : yGlnLeuLeuAlaGluGln : 342 |:!!:!!||| !|||:!! yGluIleLeuMetGluLys 305192 : TGAGATTCTTATGGAAAAG : 305211 vulgar: AmOr18 297 342 . KQ414889.1 305076 305211 + 133 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305077 305211 133 + . gene_id 24 ; sequence AmOr18 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305077 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305077 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305077 305211 133 + . alignment_id 24 ; Query AmOr18 ; Align 305077 298 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 305 -> 342 Target range: 214629 -> 214740 306 : GluTrpAspSerLysGlnProValSerGlyValThrTyrIleIleLeuLeuIleSerV : 325 ||||||:!!|||!!..!. !..!!!! !|||||||||:!::!:|||! !||||||: GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValValLeuTyrIleSerL 214630 : gAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGGTGTTGTATATCTCTC : 214687 326 : alThrPheAsnIlePheIlePheCysTyrIleGlyGlnLeuLeuAlaGluGln : 342 ::|||||||||||||||||||||||||||||||||:!!|||:!!:!!|||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValSerGluGln 214688 : tcactttcaatattttcatattttgttaCATAGGCGAGCTTGTGTCTGAACAG : 214740 vulgar: AmOr18 305 342 . KQ414889.1 214629 214740 + 132 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214630 214740 132 + . gene_id 25 ; sequence AmOr18 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214630 214740 132 + . alignment_id 25 ; Query AmOr18 ; Align 214630 306 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 305 -> 342 Target range: 291368 -> 291479 306 : GluTrpAspSerLysGlnProValSerGlyValThrTyrIleIleLeuLeuIleSerV : 325 ||||||!!:|||!...!. !!:!!.!! !:!!||||||:!!! !||||||! !||| GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 326 : alThrPheAsnIlePheIlePheCysTyrIleGlyGlnLeuLeuAlaGluGln : 342 !!||||||||||||.!.||||||||||||:!!|||:!!|||||| !! !||| heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAG : 291479 vulgar: AmOr18 305 342 . KQ414889.1 291368 291479 + 113 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 291479 113 + . gene_id 26 ; sequence AmOr18 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 291479 113 + . alignment_id 26 ; Query AmOr18 ; Align 291369 306 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 305 -> 345 Target range: 272836 -> 272956 306 : GluTrpAspSerLysGlnProValSerGlyValThrTyrIleIleLeuLeuIleSerV : 325 |||||| !..! ! .!. ! !||| !..!||||||.!!!!::!!|||||||||: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 326 : alThrPheAsnIlePheIlePheCysTyrIleGlyGlnLeuLeuAlaGluGlnThrVa : 344 !:|||||||||||||||||| ||||||||||||:!!:!!|||.!!|||::!..!:! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArgValMe 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGGTAAT : 272951 345 : lLys : 345 :::: tGln 272952 : gcaa : 272956 vulgar: AmOr18 305 345 . KQ414889.1 272836 272956 + 108 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 272956 108 + . gene_id 27 ; sequence AmOr18 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272837 272956 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272956 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 272956 108 + . alignment_id 27 ; Query AmOr18 ; Align 272837 306 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 305 -> 342 Target range: 206050 -> 206161 306 : GluTrpAspSerLysGlnProValSerGlyValThrTyrIleIleLeuLeuIleSerV : 325 ||||||!!:!:!!!..!. !!..!:!!! !:!!..!||||||! |||! !|||||| GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 326 : alThrPheAsnIlePheIlePheCysTyrIleGlyGlnLeuLeuAlaGluGln : 342 !|||||| !:!!||||||.!.||||||||||||||||||||| !!!:||| ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAA : 206161 vulgar: AmOr18 305 342 . KQ414889.1 206050 206161 + 104 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206161 104 + . gene_id 28 ; sequence AmOr18 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206161 104 + . alignment_id 28 ; Query AmOr18 ; Align 206051 306 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 298 -> 346 Target range: 297439 -> 297583 299 : LeuGlyTyrTyrSerMetMetGluTrpAspSerLysGlnProValSerGlyValThrT : 318 ||| |||::: ...... !||| ! !!! ! .!. !:!!! !||||||||| LeuLysTyrHisPhePheGlnGlyTrpLysThrHisAspMetIlePheGlyValThrI 297440 : ttaaaatatcatttttttcaggGATGGAAAACTCACGATATGATTTTTGGGGTAACGA : 297497 319 : yrIleIleLeuLeuIleSerValThrPheAsnIlePheIlePheCysTyrIleGlyGl : 337 ! ! !!!!:!!:!!|||:!!|||||||||||||||:!!!!.|||:!! !|||:! leGlyGlyPheMetLeuSerIleThrPheAsnIlePheValLeuCysHisAlaGlyGl 297498 : TCGGCGGTTTCATGCTTTCGATCACTTTTAATATATTCGTATTATGTCATGCAGGTGA : 297554 338 : nLeuLeuAlaGluGlnThrValLysVal : 346 !||||||!.!|||:!!..! !|||||| uLeuLeuValGluGluValProLysVal 297555 : ACTTCTTGTCGAGGAGGTACCGAAAGTG : 297583 vulgar: AmOr18 298 346 . KQ414889.1 297439 297583 + 103 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297440 297583 103 + . gene_id 29 ; sequence AmOr18 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297440 297583 . + . KQ414889.1 exonerate:protein2genome:local exon 297440 297583 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297440 297583 103 + . alignment_id 29 ; Query AmOr18 ; Align 297440 299 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1501 Query range: 0 -> 411 Target range: 217105 -> 219803 1 : MetGluLysSerLysIleAsnSerIleSerCysIleGlnThrAsnHisAspTyrLysA : 20 |||:!!||| ! !! !|||!.! !..!! ! !::!|||:!!:!!!!:|||:::: MetGlnLysLeuAlaThrAsnLysGluGlnSerProArgThrAspTyrGluTyrGluL 217106 : ATGCAAAAACTTGCAACAAACAAGGAACAATCCCCCAGAACCGACTACGAgtacgaga : 217163 21 : rgAsnValAsnLeuSerIleGlnTrpSerArgTrpIleLeuLysProIleGlyLeuTr : 39 ::|||:::||||||||||||||||||!:!||||||:!:|||||||||!!:|||||||| ysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTr 217164 : aaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTG : 217220 40 : pProAsnSerSerThrIleSerThrThrGlyLysTyrLeuTyrArgLeuIleAsnVal : 58 |||||||||| !!|||! !!!!! !:!! !!||| !||||||!:!|||||||||!.! pProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAla 217221 : GCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCC : 217277 59 : IleCysTyrSerLeuIleSerPheLeuSerIleProCysSerLeuTyrValIleLeuG : 78 :!!||||||.!!|||||||||||||||! !:!!|||||||||:!!||||||.!!|||| LeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeuG 217278 : TTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCG : 217337 79 : luValGluAspIleTyrAsnArgIleLysLeuPheGlyProLeuSerPheCysValMe : 97 |||||||||||:!!|||:!!!:!:!:||||||||||||||||||! !||||||||||| luValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValMe 217338 : AAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGAT : 217394 98 : tAlaPheLeuLysTyrHisLeuLeuIleLeuHisLysAspAsnIleSerGluCysIle : 116 |||||||:!!||||||:!!! !||||||:!!||||||! :!!||| !!||||||:!: tAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCysVal 217395 : GGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTG : 217451 117 : LysArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspIleGluIleMetI : 136 !:!||||||||| !!||||||!:!|||:!!! !! !..!||||||! ||| |||| ArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArgGluAlaMetI 217452 : AGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGA : 217511 137 : leThrAsnAlaAsnPheGlyArgArgLeuValIleIleCysThrPhePheMetTyrSe : 155 ||..!||||||||||||||||||!:!||||||:!!:!!|||||||||||||||||||| leValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrSe 217512 : TAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAG : 217568 156 : rGlyPheAlaPheTyrTyrIleAlaValProIleSerValGlyLysIleLeuAlaGlu : 174 |||||||...|||||||||||||||:!!|||||||||||||||!:!||||||:!!||| rGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGlu 217569 : CggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAG : 217625 175 : AspAspAsnIleThrPheIleProLeuValPheProPheSerArgPheIleIleAspT : 194 :!!! |||:!!|||||||||||||||||||||||||||!!!!:!!:!|||||||||| AsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyrIleIleAspT 217626 : AATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATA : 217685 195 : hrArgTyrSerPheIleAsnGluIleValPheSerIleGlnLeuIleAlaGlyAlaLe : 213 ||||||||!!! !! |||||||||||||||! !:!!|||||||||||||||||||| hrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLe 217686 : CTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTT : 217742 214 : uMetHisThrIleThrThrAlaAlaCysSerLeuAlaAlaIlePheAlaValHisAla : 232 ||||||| !||||||:!!||||||||||||||||||||| !||||||||||||||| uMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAla 217743 : GATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCC : 217799 233 : CysGlyGlnMetGlnValLeuSerAsnTrpLeuLysHisLeuIleAsnGlyArgSerA : 252 |||||||||!!::!!||||||! !|||||||||:!!|||||||||:!!||||||:!!| CysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgAlaA 217800 : TGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGAGCGG : 217859 253 : spMetTyrAsnAsnValAspSerArgIleAlaSerIleValSerGlnHisValArgIl : 271 ||||| !:!!!.!||||||.!!||||||||||||||||||||||||||||||||||| spMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnHisValArgIl 217860 : ATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGAT : 217916 272 : eLeu{Ly} >>>> Target Intron 1 >>>> {s}PheLeuAlaLeuThrGlu : 279 ||||{||} 1229 bp {|}||||||.!!||||||||| eLeu{Ly}++ ++{s}PheLeuThrLeuThrGlu 217917 : ATTA{AA}gt.........................ag{a}tttttgaCGCTCACAGAG : 219169 280 : LysAlaLeuGlnGlnValSerPheValGluPheLeuGlyCysMetLeuAsnIleCysL : 299 !:!.!!|||||||||:!!||||||!.!|||||||||||||||! :!!:!!||||||| ArgThrLeuGlnGlnIleSerPheAlaGluPheLeuGlyCysThrMetAspIleCysL 219170 : AGAACCCTCCAGCAAATCTCTTTCGCTGAATTTCTAGGATGCACCATGGACATATGTC : 219229 300 : euLeuGlyTyrTyrValIleThr >>>> Target Intron 2 >>>> GluTrp : 308 ||:!!|||||||||:!!|||..! 76 bp |||||| euValGlyTyrTyrIleIleVal++ ++GluTrp 219230 : TCGTTGGATATTACATTATCGTGgt.........................agGAATGG : 219332 309 : SerSerSerHisLeuThrSerAlaIleThrPhePheIleLeuLeuIleSerLeuThrP : 328 !.!|||!:! !!:!!|||||||||:!:|||!:!.!!|||||||||||||||||||||| LysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerLeuThrP 219333 : AAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCCTcactt : 219392 329 : heAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln >>>> Targ : 344 ||||||||||||||||||||||||||||||||:!!|||||||||||| heAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln++ 219393 : tcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAggt......... : 219442 345 : et Intron 3 >>>> CysLysLysIleGlyGluIleSerTyrMetValAspTrpT : 357 73 bp |||:::||||||||||||:::|||||||||:!!!!:|||| ++CysArgLysIleGlyGluMetSerTyrMetIleGluTrpT 219443 : ................agTGtaggaaaattggagaaatgtCGTACATGATCGAATGGT : 219552 358 : yrArgLeuGluGlyAsnLysLysLeuCysPheValLeuIleIleAlaMetSerAsnSe : 376 |||||||| !|||!!.|||||||||!! !||||||! !||||||||||||||||| yrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaMetSerAsnSe 219553 : ACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTC : 219609 377 : rSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThrPheSerAsp : 395 |||||||||||||||||||||||||||||||||||||! !:!!!:!||||||!!!||| rSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPheThrAsp 219610 : CTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCACTTTTACCGAC : 219666 396 : >>>> Target Intron 4 >>>> IleValLysThrAlaValAlaPheLeuAs : 405 87 bp :!!|||||||||||||||.!!|||||||| ++ ++ValValLysThrAlaValThrPheLeuAs 219667 : gt.........................agGTCGTTAAGACTGCAGTCACGTTTCTGAA : 219783 406 : nValLeuArgThrLeuThr : 411 ||||||||||||||||||| nValLeuArgThrLeuThr 219784 : TGTACTACGAACATTGACT : 219803 vulgar: AmOr22 0 411 . KQ414889.1 217105 219803 + 1501 M 272 816 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 37 111 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 83 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217106 219803 1501 + . gene_id 1 ; sequence AmOr22 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217106 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217106 217923 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219668 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219668 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219669 219670 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219669 219755 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 219754 219755 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219756 219803 . + . KQ414889.1 exonerate:protein2genome:local exon 219756 219803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217106 219803 1501 + . alignment_id 1 ; Query AmOr22 ; Align 217106 1 816 ; Align 219154 274 99 ; Align 219329 307 111 ; Align 219513 344 156 ; Align 219756 396 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1343 Query range: 17 -> 411 Target range: 212854 -> 215136 18 : TyrLysArgAsnValAsnLeuSerIleGlnTrpSerArgTrpIleLeuLysProIleG : 37 |||:!!!:!...||||||||||||||| !|||!:!||||||:!!|||||||||! | TyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrG 212855 : TACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGG : 212912 38 : lyLeuTrpProAsnSerSerThrIleSerThrThrGlyLysTyrLeuTyrArgLeuIl : 56 |||||||||||:!!!.!||| !:!!||| !!! !! !||| !!:!! !||||||:! lyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIleAlaArgLeuVa 212913 : GTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGT : 212969 57 : eAsnValIleCysTyrSerLeuIleSerPheLeuSerIleProCysSerLeuTyrVal : 75 !|||..!:!!||||||.!!||||||.!!!:!||| !||||||||||||||||||||| lAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrVal 212970 : CAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTG : 213026 76 : IleLeuGluValGluAspIleTyrAsnArgIleLysLeuPheGlyProLeuSerPheC : 95 .!!|||!!:||||||:::|||:::......|||:!!||||||||| !!!!:!!|||| PheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheC 213027 : TTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTT : 213086 96 : ysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuHisLysAspAsnIleSerGl : 114 ||||| |||.!.! !|||||||||! !|||||||||||| |||:!!||| !! ysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgTh 213087 : GCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTAC : 213143 115 : uCysIleLysArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspIleGlu : 133 !|||:!!:!!!.!!!::!!!::||||||||||||||||||:!!..!:!!|||! !||| rCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGlu 213144 : GTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAA : 213200 134 : IleMetIleThrAsnAlaAsnPheGlyArgArgLeuValIleIleCysThrPhePheM : 153 |||||| !||||||!:!||||||!:!|||:!!|||! !||||||.!!||||||| IleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPhePheM 213201 : ATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCA : 213260 154 : etTyrSerGlyPheAlaPheTyrTyrIleAlaValProIleSerValGlyLysIleLe : 172 |||||!!!||||||.!!||||||!:!:!!!.!||||||||||||!.!! !|||!!::! etTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLysMetVa 213261 : TGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGT : 213317 173 : uAlaGluAspAspAsnIleThrPheIleProLeuValPheProPheSerArgPheIle : 191 !||||||||| !|||:!:||||||! !! !:!!||| !!||| !!|||||||||||| lAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSerArgPheIle 213318 : AGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATC : 213374 192 : IleAspThrArgTyrSerPheIleAsnGluIleValPheSerIleGlnLeuIleAlaG : 211 :!!|||..!||||||||| !:!:||||||||| !!|||! !||||||:!!||||||| ValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleIleAlaG 213375 : GTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTG : 213434 212 : lyAlaLeuMetHisThrIleThrThrAlaAlaCysSerLeuAlaAlaIlePheAlaVa : 230 ||!.!|||!!:|||.!!|||.!!..!!.!||||||||||||||||||:!:|||||||| lyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPheAlaVa 213435 : GAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGT : 213491 231 : lHisAlaCysGlyGlnMetGlnValLeuSerAsnTrpLeuLysHisLeuIleAsnGly : 249 ||||||||||||||||||| :!!|||! !!:!||||||:!!|||||||||:!!||| lHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGly 213492 : TCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGT : 213548 250 : ArgSerAspMetTyrAsnAsnValAspSerArgIleAlaSerIleValSerGlnHisV : 269 |||..!|||||| !!!.|||||||||..!||||||||| !||||||!:!||||||| ArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleValAsnGlnHisV 213549 : AGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATG : 213608 270 : alArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheLeuAlaLe : 277 |||||||||||{||} 840 bp {|}||||||! !|| alArgIleLeu{Ly}++ ++{s}PheLeuGluLe 213609 : TGCGGATACTG{AA}gt.........................ag{A}TTCTTAGAGCT : 214472 278 : uThrGluLysAlaLeuGlnGlnValSerPheValGluPheLeuGlyCysMetLeuAsn : 296 |..!||||||||||||!:!||||||||||||!.!|||!!.|||! !|||! !:!!||| uValGluLysAlaLeuArgGlnValSerPheAlaGluLeuLeuValCysThrValAsn 214473 : CGTGGAGAAAGCACTTCGGCAAGTATCTTTCGCTGAATTATTAGTATGCACGGTGAAT : 214529 297 : IleCysLeuLeuGlyTyrTyrValIleThr >>>> Target Intron 2 >>>> : 307 :!!||||||:!!|||||||||:!!|||||| 68 bp LeuCysLeuValGlyTyrTyrIleIleThr++ + 214530 : CTCTGTCTCGTTGGATATTACATAATAACGgt.........................a : 214628 308 : GluTrpSerSerSerHisLeuThrSerAlaIleThrPhePheIleLeuLeuIleSer : 325 ||||||!:!|||!:!:!!||||||!!!.!!:!!|||!:! ! :!:|||! !|||||| +GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValValLeuTyrIleSer 214629 : ggAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGGTGTTGTATATCTCT : 214684 326 : LeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln >> : 344 |||||||||||||||||||||||||||||||||||||||||||||:!!|||||| LeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValSerGluGln++ 214685 : CtcactttcaatattttcatattttgttaCATAGGCGAGCTTGTGTCTGAACAGgt.. : 214743 345 : >> Target Intron 3 >>>> CysLysLysIleGlyGluIleSerTyrMetVal : 354 123 bp |||||||||:!!||||||:!!|||||||||:!! ++CysLysLysValGlyGluValSerTyrMetIle 214744 : .......................agTGCAAAAAGGTCGGAGAAGTATCGTACATGATC : 214894 355 : AspTrpTyrArgLeuGluGlyAsnLysLysLeuCysPheValLeuIleIleAlaMetS : 374 !!:|||||||||||| !||||||||||||||||||! !:!!||||||!!:||||||| GluTrpTyrArgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetS 214895 : GAATGGTACCGATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGT : 214954 375 : erAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThrPh : 393 |||||||||||:!!|||!!!||||||||||||||||||||||||! !:!!!:!||||| erAsnSerSerValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPh 214955 : CCAATTCATCCGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTT : 215011 394 : eSerAsp >>>> Target Intron 4 >>>> IleValLysThrAlaValAlaP : 403 ||||..! 69 bp :!!|||::!|||:!!||||||| eSerSer++ ++ValValArgThrSerValAlaP 215012 : CAGCAGTgt.........................agGTTGTTCGAACATCGGTTGCCT : 215110 404 : heLeuAsnValLeuArgThrLeuThr : 411 ||||||||!.!|||||||||...::: heLeuAsnAlaLeuArgThrPheSer 215111 : TCTTAAACGCGTTACgaacattttca : 215136 vulgar: AmOr22 17 411 . KQ414889.1 212854 215136 + 1343 M 255 765 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 M 33 99 5 0 2 I 0 64 3 0 2 M 37 111 5 0 2 I 0 119 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212855 215136 1343 + . gene_id 2 ; sequence AmOr22 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212855 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 212855 213621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215019 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215019 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 215020 215021 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 215020 215088 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 215087 215088 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 215089 215136 . + . KQ414889.1 exonerate:protein2genome:local exon 215089 215136 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212855 215136 1343 + . alignment_id 2 ; Query AmOr22 ; Align 212855 18 765 ; Align 214463 274 99 ; Align 214630 307 111 ; Align 214864 344 156 ; Align 215089 396 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1249 Query range: 0 -> 411 Target range: 226861 -> 230518 1 : MetGluLysSerLysIleAsnSerIleSerCysIleGlnThrAsnHisAspTyrLysA : 20 |||:!!|||..!::! !:!:!!:!!! !:!! !|||.!.:!!||||||:!!. MetLysLysGlnArgSerAlaAsnLeuAlaSerLeuAlaThrGluAsnAspTyrGlnG 226862 : ATGAAAAAACAGCGATCGGCGAACCTCGCGTCTCTCGCGACAGAGAACGACTATCAGG : 226919 21 : rgAsnValAsnLeuSerIleGlnTrpSerArgTrpIleLeuLysProIleGlyLeuTr : 39 .! !!:!!|||||||||||||||! !!:!||||||:!:|||||||||:!!|||:!!|| luTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTr 226920 : AATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTG : 226976 40 : pProAsnSerSerThrIleSerThrThrGlyLysTyrLeuTyrArgLeuIleAsnVal : 58 ||||:::||| !!! !! !||| !! !|||!:!! !!!!! ! !!|||!!:..! !! pProSerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPhe 226977 : GCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTC : 227033 59 : IleCysTyrSerLeuIleSerPheLeuSerIleProCysSerLeuTyrValIleLeuG : 78 :!!||||||:!!|||!!:|||||| !! !:!! !! !!.!!|||||||||:!!|||| LeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuG 227034 : CTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAG : 227093 79 : luValGluAspIleTyrAsnArgIleLysLeuPheGlyProLeuSerPheCysValMe : 97 |||||:!!! ! !||||||! !:!:|||:!!.!!||||||:!!||||||! !!.!|| luValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMe 227094 : AGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGAT : 227150 98 : tAlaPheLeuLysTyrHisLeuLeuIleLeuHisLysAspAsnIleSerGluCysIle : 116 |:!!.!!||||||||| !:!!|||! !!!|||:!!|||:!!||| !||||||:!! tSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysVal 227151 : GTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTC : 227207 117 : LysArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspIleGluIleMetI : 136 :!!||||||:!!||||||||||||||||||! !||| !:!!|||! !.!.:!:|||: GluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetV 227208 : GAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGG : 227267 137 : leThrAsnAlaAsnPheGlyArgArgLeuValIleIleCysThrPhePheMetTyrSe : 155 !:||| !!||| !!!:!||||||!:!|||:!!! !|||||||||||||||:!:!:!|| alThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSe 227268 : TGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAg : 227324 156 : rGlyPheAlaPheTyrTyrIleAlaValProIleSerValGlyLysIleLeuAlaGlu : 174 |...|||...|||:::||||||!.!|||||||||!:!!.!|||!..:!! !.!!||| rSerPheValPhePheTyrIleValValProIleAsnAlaGlySerValAlaThrGlu 227325 : tagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAG : 227381 175 : AspAspAsnIleThrPheIleProLeuValPheProPheSerArgPheIleIleAspT : 194 |||! ||| !!:!!:!|||! !:!! !||||||||| !!!:!.!!||| !|||. AspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIleIleAlaAspV 227382 : GACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACG : 227441 195 : hrArgTyrSerPheIleAsnGluIleValPheSerIleGlnLeuIleAlaGlyAlaLe : 213 .!||||||||| !.!!||||||||| !!||||||:!!|||!!!:!!.!!||| !:! alArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValThrGlyIleVa 227442 : TTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGT : 227498 214 : uMetHisThrIleThrThrAlaAlaCysSerLeuAlaAlaIlePheAlaValHisAla : 232 !:!!||| !:!!|||:!!||||||||||||:!!||||||:!:.!!|||||||||||| lLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAla 227499 : GTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCT : 227555 233 : CysGlyGlnMetGlnValLeuSerAsnTrpLeuLysHisLeuIleAsnGlyArgSerA : 252 ||||||||||||:!!|||||| !::!|||||| !|||||||||:!!||||||:!!| CysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGlyArgAlaA 227556 : TGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGCAGAGCGG : 227615 253 : spMetTyrAsnAsnValAspSerArgIleAlaSerIleValSerGlnHisValArgIl : 271 ||||| !!!.!..:!!|||..!||||||||||||||||||!!!!!.||||||||||| spMetSerLysThrLeuAspAspArgIleAlaSerIleValThrHisHisValArgIl 227616 : ATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACCACGTTCGAAT : 227672 272 : eLeu{Ly} >>>> Target Intron 1 >>>> {s}PheLeuAlaLeuThrGlu : 279 ||||{!!} 396 bp {.}||||||||||||! !||| eLeu{As}++ ++{n}PheLeuAlaLeuIleGlu 227673 : ATTG{AA}gt.........................ag{C}TTTCTGGCCCTCATAGAG : 228092 280 : LysAlaLeuGlnGlnValSerPheValGluPheLeuGlyCysMetLeuAsnIleCysL : 299 |||.!!:!!||||||:!!:!!|||||||||||||||||||||! :!!! !:!:|||| LysThrMetGlnGlnIleAlaPheValGluPheLeuGlyCysThrIleIleLeuCysL 228093 : AAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGTACAATAATTCTGTGCC : 228152 300 : euLeuGlyTyrTyrValIleThr >>>> Target Intron 2 >>>> GluTrp : 308 ||:!!! !||||||:!!|||||| 72 bp |||||| euIleGluTyrTyrIleIleThr++ ++GluTrp 228153 : TCATCGAGTATTACATCATAACGgt.........................agGAATGG : 228251 309 : SerSerSerHisLeuThrSerAlaIleThrPhePheIleLeuLeuIleSerLeuThrP : 328 !:! !!!.!.!.||||||! !|||:!!|||!:!! ||||||:!!|||!!!|||| AsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerPheThrP 228252 : AATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCTTTAcct : 228311 329 : heAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln >>>> Targ : 344 ||||||||||||||||||||||||||||||||:!!|||||||||!!. heAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluHis++ 228312 : tcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACgt......... : 228361 345 : et Intron 3 >>>> CysLysLysIleGlyGluIleSerTyrMetValAspTrpT : 357 1889 bp |||!:!|||:!!||||||! |||||||||:!!!!:|||| ++CysArgLysValGlyGluLysSerTyrMetIleGluTrpT 228362 : ................agTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGT : 230287 358 : yrArgLeuGluGlyAsnLysLysLeuCysPheValLeuIleIleAlaMetSerAsnSe : 376 |||||||| ||||||||||||||||||! !:!!|||||||||||||||||||||!! yrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnCy 230288 : ACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTG : 230344 377 : rSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThrPheSerAsp : 395 !|||! |||!!!||||||||||||||||||||||||! !:!!!.!|||||||||||| sSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnThrPheSerAsp 230345 : CTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGAC : 230401 396 : >>>> Target Intron 4 >>>> IleValLysThrAlaValAlaPheLeuAs : 405 67 bp :!!|||||||||:!!:!!!.!|||||||| ++ ++ValValLysThrSerMetGlyPheLeuAs 230402 : gt.........................agGTCGTTAAAACGTCCATGGGTTTCTTAAA : 230498 406 : nValLeuArgThrLeuThr : 411 |:!!||||||||||||||| nMetLeuArgThrLeuThr 230499 : CATGCTACGAACACTGACG : 230518 vulgar: AmOr22 0 411 . KQ414889.1 226861 230518 + 1249 M 272 816 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226862 230518 1249 + . gene_id 3 ; sequence AmOr22 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226862 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226862 227679 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230403 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230403 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 230404 230405 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 230404 230470 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 230469 230470 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230471 230518 . + . KQ414889.1 exonerate:protein2genome:local exon 230471 230518 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226862 230518 1249 + . alignment_id 3 ; Query AmOr22 ; Align 226862 1 816 ; Align 228077 274 99 ; Align 228248 307 111 ; Align 230248 344 156 ; Align 230471 396 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1123 Query range: 0 -> 275 Target range: 221309 -> 222134 1 : MetGluLysSerLysIleAsnSerIleSerCysIleGlnThrAsnHisAspTyrLysA : 20 |||:!!||| !! !! !:!!|||:!:|||! ! !!::..!.!.:!!|||||||||! MetGlnLysProValThrAspSerLeuSerSerThrArgValGluTyrAspTyrLysT 221310 : ATGCAGAAACCAGTAACAGACAGTCTGTCTTCGACTCGTGTTGAATACGATTACAAGA : 221367 21 : rgAsnValAsnLeuSerIleGlnTrpSerArgTrpIleLeuLysProIleGlyLeuTr : 39 !||||||!!.||||||:!:|||! !|||||||||||||||||||||||||||:!!|| hrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleGlyValTr 221368 : CGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTG : 221424 40 : pProAsnSerSerThrIleSerThrThrGlyLysTyrLeuTyrArgLeuIleAsnVal : 58 ||||||||||:!!!.!|||||||||..!! !!:!||||||||| !!|||||||||||| pProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLeuIleAsnVal 221425 : GCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAACGTC : 221481 59 : IleCysTyrSerLeuIleSerPheLeuSerIleProCysSerLeuTyrValIleLeuG : 78 :!!|||||||||||||||!!!||||||! !:!!||||||||||||||||||||||||| ValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyrValIleLeuG 221482 : GTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTCG : 221541 79 : luValGluAspIleTyrAsnArgIleLysLeuPheGlyProLeuSerPheCysValMe : 97 |||||||||||:!!||||||||||||||||||!!.||||||||||||||||||||||| luValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysValMe 221542 : AAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGAT : 221598 98 : tAlaPheLeuLysTyrHisLeuLeuIleLeuHisLysAspAsnIleSerGluCysIle : 116 |||||||||||||||||||||||||||||||:!!:!!:!!:!!||| !!||||||||| tAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCysIle 221599 : GGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTGCATC : 221655 117 : LysArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspIleGluIleMetI : 136 :!!||||||||||||||||||||||||||||||||||||||||||! !!:||||||| GluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLysAspIleMetI 221656 : GAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAGGATATAATGA : 221715 137 : leThrAsnAlaAsnPheGlyArgArgLeuValIleIleCysThrPhePheMetTyrSe : 155 || !||||||! !|||||||||||||||:!!!!:||||||||||||||||||||||| leGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheMetTyrSe 221716 : TAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGTACAG : 221772 156 : rGlyPheAlaPheTyrTyrIleAlaValProIleSerValGlyLysIleLeuAlaGlu : 174 |||||||...|||||||||||||||:!!|||.!!|||||||||||||||! !|||:!! rGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIleProAlaGln 221773 : TggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGCGCAG : 221829 175 : AspAspAsnIleThrPheIleProLeuValPheProPheSerArgPheIleIleAspT : 194 ||| |||:::||||||||||||:!!||||||||||||||||||||||||:!!|||| AspValAsnValThrPheIleProMetValPheProPheSerArgPheIleValAspT 221830 : GATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTCGATA : 221889 195 : hrArgTyrSerPheIleAsnGluIleValPheSerIleGlnLeuIleAlaGlyAlaLe : 213 ||||||||||| !:!!|||||||||:!!||||||:!!|||:!!!!:||||||||||| hrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyAlaLe 221890 : CTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTT : 221946 214 : uMetHisThrIleThrThrAlaAlaCysSerLeuAlaAlaIlePheAlaValHisAla : 232 |||||||!:!||||||:!!|||||||||||||||!.!|||!!:||||||||||||||| uMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaValHisAla 221947 : GATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCT : 222003 233 : CysGlyGlnMetGlnValLeuSerAsnTrpLeuLysHisLeuIleAsnGlyArgSerA : 252 |||||||||||||||||||||! !!:!|||||||||||||||||||||||||||:!!| CysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsnGlyArgAlaA 222004 : TGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGCCGGGCGG : 222063 253 : spMetTyrAsnAsnValAspSerArgIleAlaSerIleValSerGlnHisValArgIl : 271 |||||! !||||||||||||!!!|||||||||!.!||||||!:!|||||||||||||| spMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnHisValArgIl 222064 : ATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAACACGTTCGAAT : 222120 272 : eLeuLysPheLeu : 275 ||||:!!!:!:!! eLeuGlnTyrVal 222121 : ATTGCAGTATGTA : 222134 vulgar: AmOr22 0 275 . KQ414889.1 221309 222134 + 1123 M 275 825 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221310 222134 1123 + . gene_id 4 ; sequence AmOr22 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221310 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221310 222134 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221310 222134 1123 + . alignment_id 4 ; Query AmOr22 ; Align 221310 1 825 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1018 Query range: 11 -> 411 Target range: 208176 -> 212081 12 : IleGlnThrAsnHisAspTyrLysArgAsnValAsnLeuSerIleGlnTrpSerArgT : 31 ||| !|||...:!!||||||!.!:!!:!!!:!!!!!:!:!!!:: !!:! !| IlePheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValT 208177 : ATATTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGT : 208234 32 : rpIleLeuLysProIleGlyLeuTrpProAsnSerSerThrIleSerThrThrGlyLy : 50 ||! |||||| !||||||! !||||||!..|||! ! ! !||| ! !! !!! rpThrLeuLysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAs 208235 : GGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAA : 208291 51 : sTyrLeuTyrArgLeuIleAsnValIleCysTyrSerLeuIleSerPheLeuSerIle : 69 . !! !:!!! !|||:!!||||||:!! !!:!!!!!|||:!!.!!|||:!! !||| nSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIle 208292 : CAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATA : 208348 70 : ProCysSerLeuTyrValIleLeuGluValGluAspIleTyrAsnArgIleLysLeuP : 89 ||| !.!!:!!!:!!.!||||||! !|||||||||.!!|||:!!!:!:!!|||:!!! ProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleC 208349 : CCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCT : 208408 90 : heGlyProLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuHi : 108 !.!! !!|||||||||! !:!!||||||||| !|||||| :!!:!!! !:!!!. ysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValAr 208409 : GTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCG : 208465 109 : sLysAspAsnIleSerGluCysIleLysArgIleGluTrpAspTrpLysAsnIleThr : 127 !:!!! !:!!||| !!:!!|||:!!:!! !:!!||| ||||||!:!|||:!: ! gGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGlu 208466 : CGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAG : 208522 128 : TyrSerLysAspIleGluIleMetIleThrAsnAlaAsnPheGlyArgArgLeuValI : 147 :!!..!:!!|||! :!!||||||:!: !||||||!:!|||!.!|||!:!|||:!!: HisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleV 208523 : CACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCG : 208582 148 : leIleCysThrPhePheMetTyrSerGlyPheAlaPheTyrTyrIleAlaValProIl : 166 !:|||||| ! !|||||||||.!!||| |||||||||||||||:!!|||:! alIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLe 208583 : TGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCT : 208639 167 : eSerValGlyLysIleLeuAlaGluAspAspAsnIleThrPheIleProLeuValPhe : 185 !!!! !! !|||:!!:!!! !|||! !! !|||:!:|||!:!! ! !||||||!:! uThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyr 208640 : CACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTAT : 208696 186 : ProPheSerArgPheIleIleAspThrArgTyrSerPheIleAsnGluIleValPheS : 205 ||| !! !!!:!||||||:!:|||..!||||||||| !:!:||||||||| !!!:!! ProValProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrT 208697 : CCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATA : 208756 206 : erIleGlnLeuIleAlaGlyAlaLeuMetHisThrIleThrThrAlaAlaCysSerLe : 224 !!:!!||||||:!::!!||| !:!! |||!.!||||||..!!.!||||||.!!|| hrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLe 208757 : CGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTT : 208813 225 : uAlaAlaIlePheAlaValHisAlaCysGlyGlnMetGlnValLeuSerAsnTrpLeu : 243 |||||||:!:.!!|||:!!|||||||||||||||:!!|||:!!|||! !::!|||:!! uAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMet 208814 : GGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATG : 208870 244 : LysHisLeuIleAsnGlyArgSerAspMetTyrAsnAsnValAspSerArgIleAlaS : 263 :!! ! |||:!!:!!||||||..!||| ! ! !!.|||:!!|||..!|||:!:|||! GluLysLeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaA 208871 : GAGAAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTA : 208930 264 : erIleValSerGlnHisValArgIleLeu{Ly} >>>> Target Intron 1 >> : 273 :!||||||..!||||||||||||:!::!!{!!} 1536 bp snIleValGluGlnHisValArgValIle{As}++ 208931 : ATATCGTGGAGCAGCATGTTCGAGTGATC{AA}gt....................... : 208964 274 : >> {s}PheLeuAlaLeuThrGluLysAlaLeuGlnGlnValSerPheValGluPhe : 290 {.}|||:!!||||||||||||!!. !|||!!.:!!:!!|||!!.:!!|||.!. ++{n}PheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGluMet 208965 : ..ag{T}TTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAATG : 210547 291 : LeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleThr >>>> Tar : 307 :!!||||||! ||||||!!:|||!!!||||||||||||..!!!:! ! ValGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210548 : GTGGGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt........ : 210600 308 : get Intron 2 >>>> GluTrpSerSerSerHisLeuThrSerAlaIleThrPhe : 319 66 bp ||||||..!|||!.! !!! !! !|||::!:!:|||!:! ++GluTrpAspSerLysAspProIleSerSerLeuThrTyr 210601 : .................agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTAC : 210700 320 : PheIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluL : 339 .!.:!!||||||! !|||:!!||||||||||||||||||||||||||||||||||||: IleValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluV 210701 : ATAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAG : 210760 340 : euValAlaGluGln >>>> Target Intron 3 >>>> CysLysLysIleGly : 348 !!:!!||||||||| 999 bp !|||:!!||| alLeuAlaGluGln++ ++ThrValLysValGly 210761 : TGTTGGCTGAACAggt.........................agACAGTAAAAGTTGGA : 211786 349 : GluIleSerTyrMetValAspTrpTyrArgLeuGluGlyAsnLysLysLeuCysPheV : 368 |||! |||||||||:!!||||||||||||:!! !|||!!.||| ||| ! ! GluLysSerTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValValP 211787 : GAAAAGTCTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTAC : 211846 369 : alLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGl : 387 !|||!!:|||:!!||||||:!!|||!!!! !|||:!!||||||||||||:!::!!! roLeuMetIleSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleVa 211847 : CCTTGATGATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGT : 211903 388 : uLeuCysLeuThrThrPheSerAsp >>>> Target Intron 4 >>>> IleV : 397 |||! :!!!:!!:!|||.!!||| 104 bp :!!: lLeuSerIleSerSerPheGlyAsp++ ++ValI 211904 : TCTTTCAATCAGTAGTTTCGGTGACgt.........................agGTTA : 212037 398 : alLysThrAlaValAlaPheLeuAsnValLeuArgThrLeuThr : 411 !!||||||:!!|||.!!!:!||||||:!!|||||||||!!!||| leLysThrSerValThrTyrLeuAsnMetLeuArgThrPheThr 212038 : TCAAGACTTCGGTAACATACTTGAACATGCTACGAACATTCACA : 212081 vulgar: AmOr22 11 411 . KQ414889.1 208176 212081 + 1018 M 261 783 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 995 3 0 2 M 52 156 5 0 2 I 0 100 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208177 212081 1018 + . gene_id 5 ; sequence AmOr22 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208177 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208177 208961 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211929 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 211930 211931 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 211930 212033 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 212032 212033 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 212034 212081 . + . KQ414889.1 exonerate:protein2genome:local exon 212034 212081 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208177 212081 1018 + . alignment_id 5 ; Query AmOr22 ; Align 208177 12 783 ; Align 210499 274 99 ; Align 210664 307 111 ; Align 211774 344 156 ; Align 212034 396 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 731 Query range: 24 -> 411 Target range: 284526 -> 287338 25 : SerIleGlnTrpSerArgTrpIleLeuLysProIleGlyLeuTrpProAsnSerSerT : 44 |||:!!||| !!:!||||||.!!|||||||||||||||:!!|||||| !||| ! SerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuC 284527 : AGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCT : 284584 45 : hrIleSerThrThrGlyLysTyrLeuTyrArgLeuIleAsnValIleCysTyrSerLe : 63 !:!:!!!||| !! !||| ! !! ! !:!!:!! :!!||| !!! !! !|| ysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLe 284585 : GCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCT : 284641 64 : uIleSerPheLeuSerIleProCysSerLeuTyrValIleLeuGlu<->ValGluAsp : 81 ||||.!!||||||! !:!!||||||:!!|||! !..!:!:|||!!: ..!! ||| uIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAsp 284642 : GATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGAT : 284698 82 : IleTyrAsnArgIleLysLeuPheGlyProLeuSerPheCysValMetAlaPheLeuL : 101 :!! !!!..!:!||||||:!!.!!||||||||||||||||||:!!|||||| :!!| LeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleL 284699 : CTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCA : 284758 102 : ysTyrHisLeuLeuIleLeuHisLysAspAsnIleSerGluCysIleLysArgIleGl : 120 |||||:!!:!!||||||! !!.! ! !!!.|||.!!:!!|||:!:||| !|||.. ysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIleAr 284759 : AGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCG : 284815 121 : uTrpAsp{Tr} >>>> Target Intron 1 >>>> {p}LysAsnIleThrTyr : 128 . !|||{||} 1012 bp {|} ::: !!:: gAlaAsp{Tr}++ +-{p}LeuSerHisSerGln 284816 : TGCGGAC{TG}gt.........................ac{G}CTTTCGCATAGtcaa : 285851 129 : SerLysAspIleGluIleMetIleThrAsnAlaAsnPheGlyArgArgLeuValIleI : 148 ...:::::: |||||||||! !!:!|||!...!!|||||| !|||!.!|||. GluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIleP 285852 : gaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCT : 285911 149 : leCysThrPhePheMetTyrSerGlyPheAlaPheTyrTyrIleAlaValProIleSe : 167 !!|||.!! !||||||||||||||| !|||||| !! !.!:!!|||:!:!! heCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCy 285912 : TCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTG : 285968 168 : rValGlyLysIleLeuAlaGluAspAspAsnIleThrPheIleProLeuValPhePro : 186 !..!! !::: !! ! !|||||| ||| ! ! ! !!! !!.!|||||| sThrValArg---ThrGluIleIleAspAsnGluThrValArgSerGlnAlaPhePro 285969 : CACAGTACGC---ACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCG : 286022 187 : PheSerArgPheIleIleAspThrArgTyrSerPheIleAsnGluIleValPheSerI : 206 .!!! !||| !:!!:!!||| !!||| !||| !||||||||| ! !! IleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheM 286023 : ATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCA : 286082 207 : leGlnLeuIleAlaGlyAlaLeuMetHisThrIleThrThrAlaAlaCysSerLeuAl : 225 !:|||! !:!:|||!.! !:!!!!::!!:!!:!!|||..!!.!|||||||||||||| etGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAl 286083 : TGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGC : 286139 226 : aAlaIlePheAlaValHisAlaCysGlyGlnMetGlnValLeuSerAsnTrpLeuLys : 244 ||||:!:|||!.!:!!|||!.!|||||||||.!.::!:!!||| !!.. !||| ! aAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAsp 286140 : TGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGAT : 286196 245 : HisLeuIleAsnGlyArgSerAspMet<-><->TyrAsnAsnValAspSerArgIleA : 262 ! |||:!!:!!||| !!.!! ! ! ! !:!!.. !!!:..!|||:!:! LysLeuValAspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuG 286197 : AAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGG : 286256 263 : laSerIleValSerGlnHisValArgIleLeu{Ly} >>>> Target Intron 2 : 273 .!..!|||:!!..!!!.|||:!!!:!||||||{ } 408 bp lyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 286257 : GAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt.................... : 286293 274 : >>>> {s}PheLeuAlaLeuThrGluLysAlaLeuGlnGlnValSerPheValGlu : 289 { }|||:!!:!!! !! !||| ! !|||.!.:!!:!!!!!||||||||| ++{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGlu 286294 : .....ag{T}TTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAG : 286745 290 : PheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleThr >>>> : 307 ! :!!||||||! !||||||||||||!!!||||||||||||:!!:!:||| ValIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeuThr++ 286746 : GTGATTGGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTACTGACGgt..... : 286801 308 : Target Intron 3 >>>> GluTrpSerSerSerHisLeuThrSerAlaIleThr : 318 80 bp ||||||..!..!|||.!. !! !.!!.!!|||||| ++GluTrpGluGlnSerGluThrIleGlyThrIleThr 286802 : ....................agGAATGGGAGCAAAGTGAAACTATAGGAACGATCACG : 286912 319 : PhePheIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyG : 338 !:!! !! ||||||:!!|||!!!|||||||||:!!||||||.!!||||||||||||| TyrCysThrLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyG 286913 : TATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTG : 286972 339 : luLeuValAlaGluGln >>>> Target Intron 4 >>>> CysLysLysIle : 347 ||:!!:!!:!!|||||| 74 bp ||| !|||:!! luIleLeuSerGluGln++ ++CysLeuLysVal 286973 : AAATTCTCTCCGAACaggt.........................agtGCTTAAAAGTC : 287073 348 : GlyGluIleSerTyrMetValAspTrpTyrArgLeuGluGlyAsnLysLysLeuCysP : 367 ||| ! !!!!||||||:!!||||||||||||||| !|||!!.! ! ! ! !!! GlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyL 287074 : GGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTT : 287133 368 : heValLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetVa : 386 !.:!!||||||.!!|||:!!||||||||||||||||||||||||||||||!!.!!::! euIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIl 287134 : TGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCAT : 287190 387 : lGluLeuCysLeuThrThrPheSerAsp >>>> Target Intron 5 >>>> I : 396 !!!:|||! !|||!:!!:!|||!!!..! 71 bp : eAspLeuSerLeuSerSerPheCysSer++ ++V 287191 : CGATCTCTCTTTAAGCAGCTTCTGCAGCgt.........................agG : 287291 397 : leValLysThrAlaValAlaPheLeuAsnValLeuArgThrLeuThr : 411 !::!!|||:!!||| !!|||!:!|||!:!:!!||||||||||||||| alLeuLysSerAlaPheAlaTyrLeuSerLeuLeuArgThrLeuThr 287292 : TGTTGAAATCGGCATTCGCATATCTGAGCTTATTACGTACGCTAACC : 287338 vulgar: AmOr22 24 411 . KQ414889.1 284526 287338 + 731 M 54 162 G 0 3 M 44 132 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 47 141 G 1 0 M 82 246 G 0 6 M 19 57 S 0 2 5 0 2 I 0 404 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284527 287338 731 + . gene_id 6 ; sequence AmOr22 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284527 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284527 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286698 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 4 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 3 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287220 287221 . + . intron_id 5 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 287220 287290 . + . intron_id 5 KQ414889.1 exonerate:protein2genome:local splice3 287289 287290 . + . intron_id 4 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 287291 287338 . + . KQ414889.1 exonerate:protein2genome:local exon 287291 287338 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284527 287338 731 + . alignment_id 6 ; Query AmOr22 ; Align 284527 25 162 ; Align 284692 79 132 ; Align 285839 124 141 ; Align 285980 172 246 ; Align 286232 254 57 ; Align 286700 274 99 ; Align 286879 307 111 ; Align 287064 344 156 ; Align 287291 396 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 716 Query range: 12 -> 411 Target range: 278543 -> 280551 13 : GlnThrAsnHisAspTyrLysArgAsnValAsnLeuSerIleGlnTrpSerArgTrpI : 32 ..!|||:!! !::!!.! !:!! !! ! !|||:!!||| !!:!||||||. SerThrAspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpP 278544 : TCAACCGATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGT : 278601 33 : leLeuLysProIleGlyLeuTrpProAsnSerSerThrIleSerThrThrGlyLysTy : 51 !!|||||||||||||||:!!|||||| !||| ! !:!:!!!||| !! !||| heLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIl 278602 : TTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGAT : 278658 52 : rLeuTyrArgLeuIleAsnValIleCysTyrSerLeuIleSerPheLeuSerIlePro : 70 ! !! ! !:!!:!! :!!||| !!! !! !||||||.!!||||||! !:!!||| eSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValPro 278659 : CAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCG : 278715 71 : CysSerLeuTyrValIleLeuGlu<->ValGluAspIleTyrAsnArgIleLysLeuP : 89 |||:!!|||! !..!:!:|||!!: ..!! |||:!! !!!..!:!||||||:!!. CysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetI 278716 : TGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGA : 278775 90 : heGlyProLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuHi : 108 !!||||||||||||||||||..!|||||| :!!||||||:!!:!!|||!!:! !!. leGlyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerAr 278776 : TCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCG : 278832 109 : sLysAspAsnIleSerGluCysIleLysArgIleGluTrpAspTrpLys<->AsnIle : 126 ! ! !!!.|||.!!:!!|||:!:!!. !|||... !||||||... !..:!! gGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeu 278833 : CGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTT : 278889 127 : ThrTyr<-><->SerLysAspIleGluIleMetIleThrAsnAlaAsnPheGlyArgA : 144 :!!||| ...:::::: |||||||||! !!:!|||!...!!|||||| SerTyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgS 278890 : TCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGAT : 278949 145 : rgLeuValIleIleCysThrPhePheMetTyrSerGlyPheAlaPheTyrTyrIleAl : 163 !|||!.!|||.!! !!.!! !||||||||||||||| !.!|||||| ! !!. erLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaVa 278950 : CTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGT : 279006 164 : aValProIleSerValGlyLysIleLeuAlaGluAspAspAsnIleThrPheIlePro : 182 !:!!|||:!:! !!.!! !::: !! ! !|||||| !||| ! ! ! !! lMetProLeuPheAlaValArg---ThrGluIleIleAspAsnGluThrValArgSer 279007 : GATGCCGTTGTTCGCAGTACGC---ACGGAGATCATCGACAATGAAACGGTGAGATCT : 279060 183 : LeuValPheProPheSerArgPheIleIleAspThrArgTyrSerPheIleAsnGluI : 202 ! !!.!||||||.!!! !||| !:!!:!!||| !!||| !||| !|||| GlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluI 279061 : CAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGA : 279120 203 : leValPheSerIleGlnLeuIleAlaGlyAlaLeuMetHisThrIleThrThrAlaAl : 221 ||||| ! !!!:|||! !:!:|||!.! !:!!:!::!!:!!:!!|||..!!.!|| leValGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAl 279121 : TCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGC : 279177 222 : aCysSerLeuAlaAlaIlePheAlaValHisAlaCysGlyGlnMetGlnValLeuSer : 240 |||||||||| !|||:!:|||!.!:!!|||!.!|||||||||.!.::!:!!||| ! aCysSerLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuVal 279178 : TTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTG : 279234 241 : AsnTrpLeuLysHisLeuIleAsnGly<-><->ArgSerAspMetTyrAsnAsnValA : 258 !.. !||| ! ! ||||||:!!||| !!!!! ! ! ! !:!!.. !! ThrLysLeuAspLysLeuIleAspGlyValLysGlyArgLysSerLeuSerThrHisG 279235 : ACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATG : 279294 259 : spSerArgIleAlaSerIleValSerGlnHisValArgIleLeu{Ly} >>>> Tar : 273 !:..!|||:!:!.!..!|||:!!..!!!.|||:!!!:!||||||{ } luGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 279295 : AACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt........ : 279343 274 : get Intron 1 >>>> {s}PheLeuAlaLeuThrGluLysAlaLeuGlnGlnVal : 285 571 bp { }|||:!!:!!! !! !||| ! !|||.!.:!!:!! ++{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIle 279344 : .................ag{T}TTTATATCGCAAATCGAGGGGCTCCTGAACGAAATA : 279946 286 : SerPheValGluPheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValI : 305 !!!||||||||| ! :!!||||||! !||||||||||||!!!||| !||||||:!!: CysPheValGluValIleGlyCysThrLeuAsnIleCysPheLeuThrTyrTyrLeuL 279947 : TGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGACATATTATTTAC : 280006 306 : leThr >>>> Target Intron 2 >>>> GluTrpSerSerSerHisLeuThr : 314 !!||| 80 bp ||||||..!..!!:! !! !! ! euThr++ ++GluTrpGluGlnAsnAspAlaIle 280007 : TCACGgt.........................agGAATGGGAGCAAAATGACGCTATA : 280113 315 : SerAlaIleThrPhePheIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheC : 334 .!!.!!.!!|||!:!!!.!!:!!!|||||||||||||||||||||:!!||||||.!!| GlyThrPheThrTyrLeuMetPheLeuIleSerLeuThrPheAsnValPheIleLeuC 280114 : GGAACGTTCACGTATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCT : 280173 335 : ysTyrIleGlyGluLeuValAlaGluGln >>>> Target Intron 3 >>>> : 344 ||||||||||||||:!!:!!:!!|||||| 74 bp ysTyrIleGlyGluIleLeuSerGluGln++ ++ 280174 : GTTACATCGGTGAAATTCTCTCCGAACaggt.........................ag : 280275 345 : CysLysLysIleGlyGluIleSerTyrMetValAspTrpTyrArgLeuGluGlyAsnL : 363 ||| !|||:!!|||! ! !!!!||||||:!!||||||||||||||| !|||!!.| CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysL 280276 : TGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGA : 280334 364 : ysLysLeuCysPheValLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAl : 382 || !! ! !!!!.:!!||||||.!!|||:!!|||||||||||||||||||||||||| ysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 280335 : AAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 280391 383 : aGlyAsnMetValGluLeuCysLeuThrThrPheSerAsp >>>> Target Intr : 396 ||||!!.!!::!!!!:|||! !|||!:!!:!|||!!!..! 71 bp aGlyLysIleIleAspLeuSerLeuSerSerPheCysSer++ 280392 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt................ : 280435 397 : on 4 >>>> IleValLysThrAlaValAlaPheLeuAsnValLeuArgThrLeuTh : 411 :!::!!||||||||| !!|||!:!|||!:!:!!|||||||||||||| ++ValLeuLysThrAlaPheAlaTyrLeuSerLeuLeuArgThrLeuTh 280436 : .........agGTGTTAAAAACGGCATTCGCATATCTGAGCTTATTACGTACGCTTAC : 280549 412 : r : 411 | r 280550 : C : 280551 vulgar: AmOr22 12 411 . KQ414889.1 278543 280551 + 716 M 66 198 G 0 3 M 46 138 G 0 3 M 4 12 G 0 6 M 42 126 G 1 0 M 78 234 G 0 6 M 23 69 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278544 280551 716 + . gene_id 7 ; sequence AmOr22 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278544 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278544 279340 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280551 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278544 280551 716 + . alignment_id 7 ; Query AmOr22 ; Align 278544 13 198 ; Align 278745 79 138 ; Align 278886 125 12 ; Align 278904 129 126 ; Align 279030 172 234 ; Align 279270 250 69 ; Align 279913 274 99 ; Align 280092 307 111 ; Align 280277 344 156 ; Align 280504 396 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 687 Query range: 16 -> 396 Target range: 256631 -> 258624 17 : AspTyrLysArgAsnValAsnLeuSerIleGlnTrpSerArgTrpIleLeuLysProI : 36 :!!!:!|||!!! !! !:!!! !|||:!!|||! !!:!||||||.!!|||||||||| AsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 256632 : AATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTA : 256689 37 : leGlyLeuTrpProAsnSerSerThrIleSerThrThrGlyLysTyrLeuTyrArgLe : 55 ||||| !|||||| !||||||:!!! !!!!||| !! !::! !!:!!! ! !:! leGlyAlaTrpProProSerSerSerThrThrThrLeuGluArgAsnValSerIleVa 256690 : TAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGT : 256746 56 : uIleAsnValIleCysTyrSerLeuIleSerPheLeuSerIleProCysSerLeuTyr : 74 !:!:|||:!!:!!||||||.!!! !|||! !||| !! !|||||||||! !|||:!! lLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIleProCysLeuLeuHis 256747 : TTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCAT : 256803 75 : ValIleLeuGluValGluAspIleTyrAsnArgIleLysLeuPheGlyProLeuSerP : 94 |||.!!|||!!:! !!!:..!.!!||| ::::::||| |||||||||:!!||| ValPheLeuAspAspAspSerPheTyrMetLysValLysAsnPheGlyProMetSerH 256804 : GTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCC : 256863 95 : heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuHisLysAspAsnIleSe : 113 !!! :!!!!:::!! ! !!!.||| ||||||:!:|||!!. ! ! :!!||| ! isTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleAr 256864 : ATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACG : 256920 114 : rGluCysIleLysArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspIle : 132 ! ! |||:!!:!!!.!|||||| !||||||!:!! :!:! ! ..!|||||| ! gTyrCysValGluHisIleGluThrAspTrpArgMetValArgArgGluLysAspGln 256921 : CTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAA : 256977 133 : GluIleMetIleThrAsnAlaAsnPheGlyArgArgLeuValIleIleCysThrPheP : 152 :!!:!:|||!!:! !||||||!..||||||||| !:!!!.!! !.!!|||.!! !. GlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaI 256978 : CAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTA : 257037 153 : heMetTyrSerGlyPheAlaPheTyrTyrIleAlaValProIleSerValGlyLysIl : 171 !!||| ! |||||| ::::::::::!! ! !!:!:!:!..!! !! !|| leMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAsnThrGluIleIl 257038 : TCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAAT : 257094 172 : eLeuAlaGluAspAspAsnIleThrPheIleProLeuValPheProPheSerArgPhe : 190 |! !!.!! !:!!!!:!..! ! ! ! ! !||| ! !! !! ! ! !!:! eHisValGlyAsnGluThrThrIleValArgValLeuProValThrValTyrLysLys 257095 : TCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAG : 257151 191 : IleIleAspThrArgTyrSerPheIleAsnGluIleValPheSerIleGlnLeuIleA : 210 :!::!::!!..! ! ! ||| !! |||||||||||| !!! !!!:||| ! : LeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheMetGlnThrTrpS 257152 : CTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGT : 257211 211 : laGlyAlaLeuMetHisThrIleThrThrAlaAlaCysSerLeuAlaAlaIlePheAl : 229 !!..! !:!! ! !|||! !|||..!::! !! !||||||||||||:!!||||| erSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAlaAlaValPheAl 257212 : CGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGC : 257268 230 : aValHisAlaCysGlyGlnMetGlnValLeuSerAsnTrpLeuLysHisLeuIleAsn : 248 |..!||||||! !||||||:!! ||||||! !:::|||:!!! !.!.!!!:!:||| aThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGluPheValAsn 257269 : CACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAAT : 257325 249 : <->GlyArgSerAspMetTyrAsnAsnValAspSerArgIleAlaSerIleValSerG : 267 ..!|||!:! ... !!.!!:!|||!.! !||||||..!! GluSerArgAsnArgGluLysThrPheProPheLysGlnIleGlyValIleValGluH 257326 : GAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGC : 257385 268 : lnHisValArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheLe : 275 !.|||:!!|||:!:|||{!.} 76 bp {.}|||:! isHisLeuArgValLeu{Se}++ ++{r}PheIl 257386 : ATCATTTAAGAGTGCTG{AG}gt.........................ag{T}TTCAT : 257485 276 : uAlaLeuThrGluLysAlaLeuGlnGlnValSerPheValGluPheLeuGlyCysMet : 294 !:!!! !! !|||:!!!.!:!!.!.!:!:!!!!!|||:!!|||!!.!!! !!|||! ! eSerTyrIleGluGluValMetAsnArgIleCysPheLeuGluLeuPheArgCysThr 257486 : ATCATATATCGAGGAAGTGATGAACCGAATATGTTTTTTAGAGTTGTTTAGATGCACG : 257542 295 : LeuAsnIleCysLeuLeuGlyTyrTyrValIleThr >>>> Target Intron 2 : 307 ||| !||||||:!!||||||||||||:!!:!!.!! 684 bp LeuAlaIleCysMetLeuGlyTyrTyrIleLeuAla++ 257543 : CTGGCTATATGCATGCTGGGATACTACATTCTTGCGgt.................... : 257583 308 : >>>> GluTrpSerSerSerHisLeuThrSerAlaIleThrPhePheIleLeuLeu : 323 |||||||||!!!... ::: ::: :::::!|||!!::!!||| ++GluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheMetIleLeu 257584 : .....aggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTATGATACTC : 258313 324 : IleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluG : 343 |||||||||:::||||||||||||:::...|||||||||||||||:!!:!!.!!|||| IleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluG 258314 : ATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATTAACAGAAC : 258373 344 : ln >>>> Target Intron 3 >>>> CysLysLysIleGlyGluIleSerTyr : 352 || 90 bp |||||||||:!!|||!!::!: !||| ln++ ++CysLysLysValGlyAspValValTyr 258374 : AGgt.........................agTGCAAGAAAGTTGGCGACGTGGTTTAT : 258490 353 : MetValAspTrpTyrArgLeuGluGlyAsnLysLysLeuCysPheValLeuIleIleA : 372 |||..!||||||||| !||| ! !!!.!:!! !||| !!!.:!!|||:!!|||| MetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLeuValIleA 258491 : ATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTTGGTAATCG : 258550 373 : laMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuTh : 391 || |||!:! ! !:!!:!!:!!|||||||||...... ...::!! !:!! laArgSerSerValValValGlnIleThrAlaGlyLysPhePheHisMetSerIleTy 258551 : CACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatGTCCATTTA : 258607 392 : rThrPheSerAspIle : 396 !||||||||||||:!: rThrPheSerAspVal 258608 : CACATTCAGCGATGTG : 258624 vulgar: AmOr22 16 396 . KQ414889.1 256631 258624 + 687 M 232 696 G 0 3 M 24 72 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256632 258624 687 + . gene_id 8 ; sequence AmOr22 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256632 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256632 257404 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256632 258624 687 + . alignment_id 8 ; Query AmOr22 ; Align 256632 17 696 ; Align 257331 249 72 ; Align 257482 274 99 ; Align 258265 307 111 ; Align 258466 344 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 533 Query range: 22 -> 346 Target range: 262846 -> 264657 23 : AsnLeuSerIleGlnTrpSerArgTrpIleLeuLysProIleGlyLeuTrpProAsnS : 42 :!!! !|||:!:||| !:!||||||:!:||||||||||||||| !|||||| | AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 43 : erSerThrIleSerThrThrGlyLysTyrLeuTyrArgLeuIleAsnValIleCysTy : 61 ||:!!:!!||||||! !! !! !::! !:!!!:: !|||:!!! !|||:!!||||| erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 62 : rSerLeuIleSerPheLeuSerIleProCysSerLeuTyrValIleLeuGluValGlu : 80 |!!!|||||| !! ! ! !||||||! !! !|||:!!:!!:!!||||||!.!||| rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 81 : AspIleTyrAsnArgIleLysLeuPheGlyProLeuSerPheCysValMetAlaPheL : 100 :!!.!!:!!! !:!:!::!!:!!.!!|||||||||.!! !! !!:!:!.!.!.: AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 101 : euLysTyrHisLeuLeuIleLeuHisLysAspAsnIleSerGluCysIleLysArgIl : 119 !!!!.||| !! !|||:!:||||||!.. ! :!!|||..!! |||:!::!!!.!:! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 120 : eGluTrpAspTrpLysAsnIleThrTyrSerLysAspIleGluIleMetIleThrAsn : 138 ::!! |||||| ! !:!:||| ! !:!!||| !...||||||:!:! !||| lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 139 : AlaAsnPheGlyArgArgLeuValIleIleCysThrPhePheMetTyrSerGlyPheA : 158 |||!!.!:!|||||| !:!!!.! ! !|||.!!.!!|||||| ! !!!.!!.!! AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 159 : laPheTyrTyrIleAlaValProIleSerValGlyLysIleLeuAlaGluAspAspAs : 177 !! ! ! ! !:!!!.!..! !!.!!!!!..! ! !||| !! !! :!!!!:!. etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 178 : nIleThrPheIleProLeuValPheProPheSerArgPheIleIleAspThrArgTyr : 196 !! !! !.!. ! !||| !! !||| ! ! !!:! |||||| ..! ! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 197 : SerPheIleAsnGluIleValPheSerIleGlnLeuIleAlaGlyAlaLeuMetHisT : 216 !:! ! ||||||||| !!.!!:!!! |||!!!:!::!!||| !:!!:!: !. AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 217 : hrIleThrThrAlaAlaCysSerLeuAlaAlaIlePheAlaValHisAlaCysGlyGl : 235 !!! !|||..!!.!|||! !.!!:!!.!!|||:!:||||||! !|||||||||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 236 : nMetGlnValLeuSerAsnTrpLeuLysHisLeuIleAsn<->GlyArgSerAspMet : 253 |:!!.!.||||||! !::!|||:!!! !.!.!!!:!:||| ..!|||..!!!:! nLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsn 263484 : GTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAAT : 263540 254 : TyrAsnAsnValAspSerArgIleAlaSerIleValSerGlnHisValArgIleLeu{ : 273 ! ||| ! ! !!!!..!|||!.! !||||||..!!!.|||:!!|||:!!|||{ LysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeu{ 263541 : AAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTG{ : 263600 274 : Ly} >>>> Target Intron 1 >>>> {s}PheLeuAlaLeuThrGluLysAl : 281 !.} 72 bp {.}|||:!!! !! !! !:!!!!.!. Se}++ ++{r}PheIleAspArgIleLysAsnVa 263601 : AG}gt.........................ag{T}TTCATAGATCGTATTAAGAATGT : 263696 282 : aLeuGlnGlnValSerPheValGluPheLeuGlyCysMetLeuAsnIleCysLeuLeu : 300 !:!!... !:!!!!!|||||||||!!.!!! !..!! !|||:!!||||||:!!||| lMetSerThrIleCysPheValGluLeuPheLysAlaThrLeuAspIleCysMetLeu 263697 : GATGAGTACGATATGTTTCGTGGAGTTATTCAAGGCTACGCTGGATATATGCATGCTA : 263753 301 : GlyTyrTyrValIleThr >>>> Target Intron 2 >>>> GluTrpSerSe : 310 |||||||||:!!:!!||| 764 bp ||||||..!|| GlyTyrTyrIleLeuThr++ ++GluTrpGluSe 263754 : GGTTACTACATACTTACGgt.........................agGAATGGGAAAG : 264547 311 : rSerHisLeuThrSerAlaIleThrPhePheIleLeuLeuIleSerLeuThrPheAsn : 329 | ::: ::: !|||!:!|||!!::!!|||||||||:!! ! !||| rHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerMetCysGlyAsn 264548 : TCAtgatattcaaaatttgacTACATATTTCATGATACTGATATCAATGTGCGGCAAC : 264604 330 : IlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlnCysLysLys : 346 ||||||:!!.!.|||||||||||||||:!!:!!.!!|||||| ||| IlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGlnValIleLys 264605 : ATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcaggtaattaaa : 264657 vulgar: AmOr22 22 346 . KQ414889.1 262846 264657 + 533 M 226 678 G 0 3 M 24 72 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 33 99 5 0 2 I 0 760 3 0 2 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 264657 533 + . gene_id 9 ; sequence AmOr22 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262847 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263601 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 263673 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263672 263673 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 263674 263773 . + . KQ414889.1 exonerate:protein2genome:local exon 263674 263773 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263774 263775 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263774 264537 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264536 264537 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264538 264657 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264657 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262847 264657 533 + . alignment_id 9 ; Query AmOr22 ; Align 262847 23 678 ; Align 263528 249 72 ; Align 263675 274 99 ; Align 264538 307 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 446 Query range: 22 -> 306 Target range: 274380 -> 275309 23 : AsnLeuSerIleGlnTrpSerArgTrpIleLeuLysProIleGlyLeuTrpProAsnS : 42 :!!! !|||:!:|||! !!:!||||||.!!||||||||||||||| !|||||| : AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuA 274381 : GACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAG : 274438 43 : erSerThrIleSerThrThrGlyLysTyrLeuTyrArgLeuIleAsnValIleCysTy : 61 !!||| !!! !!!!! ! !! !::! !|||! !.!|||::: :::||||| laSerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTy 274439 : CCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctA : 274495 62 : rSerLeuIleSerPheLeuSerIleProCysSerLeuTyrValIleLeuGluValGlu : 80 |!!!!!!||| !! ! ! !|||||| !!! !!!!:!!:!!||||||! !! !||| rCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGlu 274496 : CTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAA : 274552 81 : AspIleTyrAsnArgIleLysLeuPheGlyProLeuSerPheCysValMetAlaPheL : 100 ..!:!!:!! !:!:!:||||||.!!|||||||||.!! !!! !!!!:!.! : SerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyI 274553 : AGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAA : 274612 101 : euLysTyrHisLeuLeuIleLeuHisLysAspAsnIleSerGluCysIleLysArgIl : 119 !!!!.||| ! !|||:!:|||!.!!.. ! .!.||| !!! |||:!::!!!.!!! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 274613 : TTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACAT : 274669 120 : eGluTrpAspTrpLysAsnIleThrTyrSerLysAspIleGluIleMetIleThrAsn : 138 ::!! ||||||!:!! !:!:||| !!:!!||| !:!!:!:|||:!:! !||| tGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsn 274670 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAAC : 274726 139 : AlaAsnPheGlyArgArgLeuValIleIleCysThrPhePheMetTyrSerGlyPheA : 158 |||!!..!!|||||| !:!!!.!|||.!!|||.!! |||||| ! !!!||| !! AlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 274727 : GCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTC : 274786 159 : laPheTyrTyrIleAlaValProIleSerValGlyLysIleLeuAlaGluAspAspAs : 177 !! !|||! !:!: !..! !!.!!!!!:!! !! :!!! !!.!! !:!!!!:!. euCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluTh 274787 : TCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGAC : 274843 178 : nIleThrPheIleProLeuValPheProPheSerArgPheIleIleAspThrArgTyr : 196 !! !||| ! ! !||| !! ! ! !! !!:! |||:!!! ..! ! rArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThr 274844 : CAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACG : 274900 197 : SerPheIleAsnGluIleValPheSerIleGlnLeuIleAlaGlyAlaLeuMetHisT : 216 ||| ! ||||||||||||.!!:!! |||!!!:!::!!||| !:!!:!!:!!: SerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnS 274901 : AGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATT : 274960 217 : hrIleThrThrAlaAlaCysSerLeuAlaAlaIlePheAlaValHisAlaCysGlyGl : 235 !!! !.!!..!!.!|||! !||||||||||||:!:||||||!.!||||||! !||||| erSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGl 274961 : CGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCA : 275017 236 : nMetGlnValLeuSerAsnTrpLeuLysHisLeuIleAsnGlyArgSerAspMetTyr : 254 |:!!...||||||! !! |||:!!! .!.!!!:!:||| ! !!!!|||... nLeuSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsn 275018 : GTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaat : 275074 255 : AsnAsnVal<->AspSerArgIleAlaSerIleValSerGlnHisValArgIleLeu{ : 273 ...|||||| |||..!|||!.! !:!!|||..!!!.|||:!!|||:!!|||{ LysAsnValTyrPheSerGluIleGlyValValValGluHisHisLeuArgValLeu{ 275075 : aaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTC{ : 275134 274 : Ly} >>>> Target Intron 1 >>>> {s}PheLeuAlaLeuThrGluLysAl : 281 !.} 74 bp {.}|||:!!|||! !! !||| ! !. Se}++ ++{r}PheIleAlaArgIleGluAspVa 275135 : AG}gt.........................ag{T}TTCATAGCACGTATCGAGGATGT : 275232 282 : aLeuGlnGlnValSerPheValGluPheLeuGlyCysMetLeuAsnIleCysLeuLeu : 300 !:!!.!.!:!:!!!!!|||:!!|||!!.!!! !|||! |||:!!!!:|||:!!||| lMetAsnArgIleCysPheMetGluLeuPheLysCysThrLeuAspMetCysMetLeu 275233 : GATGAATCGAATATGCTTCATGGAATTGTTCAAGTGTACTCTGGATATGTGCATGCTT : 275289 301 : GlyTyrTyrValIleThr : 306 |||||||||:!!:!!||| GlyTyrTyrIleLeuThr 275290 : GGCTATTACATTCTCACG : 275309 vulgar: AmOr22 22 306 . KQ414889.1 274380 275309 + 446 M 235 705 G 0 3 M 15 45 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274381 275309 446 + . gene_id 10 ; sequence AmOr22 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274381 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274381 275135 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275309 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275309 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274381 275309 446 + . alignment_id 10 ; Query AmOr22 ; Align 274381 23 705 ; Align 275089 258 45 ; Align 275211 274 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 424 Query range: 14 -> 273 Target range: 303169 -> 304869 15 : AsnHisAspTyrLysArgAsnValAsnLeuSerIleGlnTrpSerArgTrpIleLeuL : 34 ||| :!!||||||!:!:!!:!! !! ! !! !:!! |||!:!|||||||||| AsnLeuAsnTyrLysLysAspIleValTyrValThrLysHisSerLysTrpIleLeuL 303170 : AATTTGAATTACAAGAAAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCCTGA : 303227 35 : ysProIleGlyLeuTrpProAsnSerSerThrIleSerThrThrGlyLysTyrLeuTy : 53 || !!:!!|||:!!|||||| :!!..!:!:..! !|||!.! !!:!||| ysSerLeuGlyIleTrpPro------AlaValLeuAspGluThrAlaGlyPheLeuPr 303228 : AGTCCCTTGGTATTTGGCCA------GCCGTGTTGGACGAAACCGCAGGATTCCTACC : 303278 54 : rArgLeuIleAsnValIleCysTyrSerLeuIleSerPheLeuSerIleProCysSer : 72 !:!:!!! !! !! !:!! !! !!! !:!!:!!! !||| ! !|||||||||! ! oLysIleThrIleGlyLeuSerAsnLeuValLeuLeuPheThrValIleProCysIle 303279 : AAAAATCACCATTGGACTCAGTAATTTGGTTCTATTATTCACCGTGATACCGTGTATT : 303335 73 : LeuTyrValIleLeuGluValGluAspIleTyrAsnArgIleLysLeuPheGlyProL : 92 |||:!!:!!|||!!!||| !:!!|||! ! |||:!:||||||||||||! !| LeuHisIleIlePheGluGlnLysAspThrIleIleArgLeuLysLeuPheGlyLeuL 303336 : CTACACATAATATTCGAACAAAAGGATACGATAATAAGATTGAAACTATTCGGTCTGC : 303395 93 : euSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuHisLysAspAs : 111 |||||||||||:!!!!::!!!!.:!!|||||| !||| ! !!..||| !. euSerPheCysLeuIleSerLeuMetLysTyrTrpAlaLeuAlaThrArgLysProAr 303396 : TGAGTTTCTGTTTGATCTCGTTGATGAAGTATTGGGCCCTCGCCACGCGGAAACCAAG : 303452 112 : nIleSerGluCysIleLysArgIleGluTrpAspTrpLysAsn >>>> Target I : 126 .|||!.!|||||||||:!!..!:!::!! ! |||||||||.!. 938 gIleLysGluCysIleGluGluValGlnSerAspTrpLysGlu++ 303453 : GATCAAAGAATGTATAGAAGAGGTGCAAAGTGATTGGAAAGAGgt............. : 303499 127 : ntron 1 >>>> IleThrTyrSerLysAspIleGluIleMetIleThrAsnAlaAs : 140 bp :!: !! ! !!:!||| !|||!!:|||:!!! ! !!!.!.! ++ValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGl 303500 : ............agGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCA : 304477 141 : nPheGlyArgArgLeuValIleIleCysThrPhePheMetTyrSerGlyPheAlaPhe : 159 ..!.||||||!.!|||..!|||||||||.!!.!.|||||||||!!!||| !.!!.!! nMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIle 304478 : AATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATT : 304534 160 : TyrTyrIleAlaValProIleSerValGlyLysIleLeuAlaGluAspAspAsnIleT : 179 |||:!!! !.!:!!! !.!!:!!..!|||! ! !:!! !!:!!: !!||| !| TyrHisThrValMetGlnPheAlaThrGlyThrTyrVal---AspGluTyrAsnArgT 304535 : TATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTG---GATGAGTATAATCGTA : 304591 180 : hrPheIleProLeuValPheProPheSerArgPheIleIleAspThrArgTyrSerPh : 198 ||.!!! !|||||||||!:!||| !! !!!! !:!!.!!|||..!!:! ||| hrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerPr 304592 : CGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCC : 304648 199 : eIleAsnGluIleValPheSerIleGlnLeuIleAlaGlyAlaLeuMetHisThrIle : 217 !||| !!|||:!:|||!:!! !:!!!!.! !!!:..!||| !:!!!!::!!:!!||| oIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIle 304649 : TATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATA : 304705 218 : ThrThrAlaAlaCysSerLeuAlaAlaIlePheAlaValHisAlaCysGlyGlnMetG : 237 |||.!!!.!||||||.!!|||||||||:!!||||||..!|||||||||||||||!!:. ThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleA 304706 : ACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTG : 304765 238 : lnValLeuSerAsnTrpLeuLysHisLeuIleAsnGlyArgSerAspMetTyrAsnAs : 256 !.:!!:!!! !::! ! ||| !!|||:!!|||.!!!:!..!... ::!:! spIleValMetSerArgLeuGlyAspLeuValAsnSerLysGluSer------SerAs 304766 : ATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCA------TCTGA : 304816 257 : nValAspSerArgIleAlaSerIleValSerGlnHisValArgIleLeuLys : 273 !:!!|||!.!|||:!! !..!||||||..!!!.|||:!!|||||||||!:! pLeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIleLeuArg 304817 : TTTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTAAGG : 304869 vulgar: AmOr22 14 273 . KQ414889.1 303169 304869 + 424 M 26 78 G 2 0 M 83 249 5 0 2 I 0 934 3 0 2 M 47 141 G 1 0 M 79 237 G 2 0 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303170 304869 424 + . gene_id 11 ; sequence AmOr22 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303170 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303170 303496 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304869 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304869 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 303170 304869 424 + . alignment_id 11 ; Query AmOr22 ; Align 303170 15 78 ; Align 303248 43 249 ; Align 304435 126 141 ; Align 304576 174 237 ; Align 304813 255 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 417 Query range: 19 -> 277 Target range: 232447 -> 233221 20 : ArgAsnValAsnLeuSerIleGlnTrpSerArgTrpIleLeuLysProIleGlyLeuT : 39 |||:!! !.!.! !||||||||| !!:!||||||.!!|||! !|||!!:||| !| ArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaT 232448 : CGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCAT : 232505 40 : rpProAsnSerSerThrIleSerThrThrGlyLysTyrLeuTyrArgLeuIleAsnVa : 58 |||||..! !!!! !! !|||! !.!! !:!! ||| !:!|||:!:!..:! rpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLe 232506 : GGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACT : 232562 59 : lIleCysTyrSerLeuIleSerPheLeuSerIleProCysSerLeuTyrValIleLeu : 77 !! !|||:!!||||||!!:! !! !! !! !:!!||||||! !|||!:!:!!:!:!!! uThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPhe 232563 : CACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTC : 232619 78 : GluValGluAspIleTyrAsnArgIleLysLeuPheGlyProLeuSerPheCysValM : 97 |||! ! !..!:!! ! .!.|||!!:|||! !.!!||||||:!!||| !! !:!!| GluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuM 232620 : GAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGA : 232679 98 : etAlaPheLeuLysTyrHisLeuLeuIleLeuHisLysAspAsnIleSerGluCysIl : 116 ||!.! |||!!.||| !! !|||:!: ! ! !:!!:!!||| ! ! |||:! etGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysVa 232680 : TGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGT : 232736 117 : eLysArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspIleGluIleMet : 135 ::!!!:!:!::!! !||||||::!|||:!!! ! ! !! !! !!!::!:||| lGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMet 232737 : GGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATG : 232793 136 : IleThrAsnAlaAsnPheGlyArgArgLeuValIleIleCysThrPhePheMetTyrS : 155 :!:! !||||||!!..!!|||||| !:!!!.! !|||..!.!!|||! !|||:!!! LeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisT 232794 : TTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACA : 232853 156 : erGlyPheAlaPheTyrTyrIleAlaValProIleSerValGlyLysIleLeuAlaGl : 174 !!||| !!!.!! ! !! ! |||!.!..! !:!! !!:!!.!!! !.!!! !!.!! hrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGl 232854 : CCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGG : 232910 175 : uAspAspAsnIleThrPheIleProLeuValPheProPheSerArgPheIleIleAsp : 193 !:!!!!:!:! !:!!.!. !|||||| !! ! !!|||! !! ! :!:!!:||| yAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAsp 232911 : GAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGAC : 232967 194 : ThrArgTyrSerPheIleAsnGluIleValPheSerIleGlnLeuIleAlaGlyAlaL : 213 ||||||!:!||| ! |||||||||:!!||| !:!!|||! !:!!:!!||| !: ThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheI 232968 : ACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCA : 233027 214 : euMetHisThrIleThrThrAlaAlaCysSerLeuAlaAlaIlePheAlaValHisAl : 232 !!:!!:!!:!!:!!|||..!!.!||||||.!!|||!.!|||:!!.!.|||:!!||||| leValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAl 233028 : TCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGC : 233084 233 : aCysGlyGlnMetGlnValLeuSerAsnTrpLeuLysHisLeuIleAsnGlyArgSer : 251 ||||||||||:!!.!.|||:!!! !::: ||| ! !!|||:!::!!!.!!:!.!! aCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGly 233085 : GTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGG : 233141 252 : AspMetTyrAsnAsnValAspSerArgIleAlaSerIleValSerGlnHisValArgI : 271 .!. ! ! !.. !!.!.!.!!!!:!:!!!.!! !||||||..!!!.|||:!!|||! GlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgT 233142 : CAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTA : 233201 272 : leLeuLysPheLeuAlaLeu : 277 !|||!:!!:!|||:!!:!! hrLeuArgTyrLeuSerVal 233202 : CATTAAGGTATTTGTCTGTG : 233221 vulgar: AmOr22 19 277 . KQ414889.1 232447 233221 + 417 M 258 774 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232448 233221 417 + . gene_id 12 ; sequence AmOr22 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232448 233221 . + . KQ414889.1 exonerate:protein2genome:local exon 232448 233221 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232448 233221 417 + . alignment_id 12 ; Query AmOr22 ; Align 232448 20 774 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 404 Query range: 22 -> 273 Target range: 266634 -> 267390 23 : AsnLeuSerIleGlnTrpSerArgTrpIleLeuLysProIleGlyLeuTrpProAsnS : 42 :!!! !|||:!:|||! !!:!||||||.!!||||||||||||||| !|||||| ! AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProL 266635 : GATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGT : 266692 43 : erSerThrIleSerThrThrGlyLysTyrLeuTyrArgLeuIleAsnValIleCysTy : 61 !||| !! !|||! ! !! !::! !:!!! ! ! !:!:! !||||||||||| euSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266693 : TGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 62 : rSerLeuIleSerPheLeuSerIleProCysSerLeuTyrValIleLeuGluValGlu : 80 |!!!! !||| !||| ! !|||||||||! !!!!:!!:!!:!!||||||! !||| rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 81 : AspIleTyrAsnArgIleLysLeuPheGlyProLeuSerPheCysValMetAlaPheL : 100 ..!||| !!..!:!:!:|||:!!||||||||||||||| !!! !!:!:!.! : SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 101 : euLysTyrHisLeuLeuIleLeuHisLysAspAsnIleSerGluCysIleLysArgIl : 119 !!!!.||| ! !|||:!:|||!.!!.. ! .!.||| !!! |||:!!:!!!.!!! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 120 : eGluTrpAspTrpLysAsnIleThrTyrSerLysAspIleGluIleMetIleThrAsn : 138 ::!! ||||||!:!! !:!:||| !!:!!|||! :!!:!:|||:!:! !||| tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 139 : AlaAsnPheGlyArgArgLeuValIleIleCysThrPhePheMetTyrSerGlyPheA : 158 |||!...!!|||||| !:!!!.!|||.!!|||.!! |||||| ! !!!||| !! AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 159 : laPheTyrTyrIleAlaValProIleSerValGlyLysIleLeuAlaGluAspAspAs : 177 ! !|||! !:!: !..! !!.!!!!!:!! !! :!: !!.!! :!!!!:!. euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 178 : nIleThrPheIleProLeuValPheProPheSerArgPheIleIleAspThrArgTyr : 196 !! ! ! ! !! !||| !! ! !! !!! !!:! !!:|||! ..! ! ! rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 197 : SerPheIleAsnGluIleValPheSerIleGlnLeuIleAlaGlyAlaLeuMetHisT : 216 ||| ! ||||||||||||.!! ! !|||!!!:!!:!!||| !:!!:!!:!!: SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 217 : hrIleThrThrAlaAlaCysSerLeuAlaAlaIlePheAlaValHisAlaCysGlyGl : 235 !!! !..!..!!.!|||! !||||||||||||:!:||||||!.!|||||||||||||| erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 236 : nMetGlnValLeuSerAsnTrpLeuLysHisLeuIleAsnGlyArgSerAspMetTyr : 254 |:!!...||||||! !! |||:!!|||.!.!!!:!:||| !! !!!!|||! !! nLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsn 267272 : GCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAAT : 267328 255 : AsnAsnVal<->AspSerArgIleAlaSerIleValSerGlnHisValArgIleLeuL : 273 !!.|||||| !..!!:!|||!.! !:!!|||..!!!.|||:!!|||:!!|||! LysAsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeuA 267329 : AAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGA : 267388 274 : ys : 273 :! rg 267389 : GG : 267390 vulgar: AmOr22 22 273 . KQ414889.1 266634 267390 + 404 M 235 705 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266635 267390 404 + . gene_id 13 ; sequence AmOr22 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266635 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266635 267390 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266635 267390 404 + . alignment_id 13 ; Query AmOr22 ; Align 266635 23 705 ; Align 267343 258 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 377 Query range: 16 -> 268 Target range: 259751 -> 260507 17 : AspTyrLysArgAsnValAsnLeuSerIleGlnTrpSerArgTrpIleLeuLysProI : 36 ..!!:!! !!!:!! !:!!! !|||:!!|||!::!:!||||||.!!|||||||||| SerPheThrSerHisSerAspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProI 259752 : AGTTTCACTAGCCACAGTGACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGA : 259809 37 : leGlyLeuTrpProAsnSerSerThrIleSerThrThrGlyLysTyrLeuTyrArgLe : 55 ||||| !|||||| !||||||:!!! !!!! ! !! !||| !:!!! ! !:! leGlyAlaTrpProProSerSerSerThrThrArgLeuGluLysIleIleSerValIl 259810 : TAGGCGCTTGGCCACCTTCATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTAT : 259866 56 : uIleAsnValIleCysTyrSerLeuIleSerPheLeuSerIleProCysSerLeuTyr : 74 !:!:! ! !!|||||||||||| !||| ! !! ! !||||||||| !|||:!! eLeuIlePheIleCysTyrSerThrIleLeuValThrLeuIleProCysValLeuHis 259867 : CCTGATCTTTATCTGCTACAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCAC : 259923 75 : ValIleLeuGluValGluAspIleTyrAsnArgIleLysLeuPheGlyProLeuSerP : 94 :!!:!!|||||| !|||..!:!:|||! !:!! |||:!!.!!|||||||||!!! MetLeuLeuGluLysGluSerLeuTyrMetLysThrLysValLeuGlyProLeuThrH 259924 : ATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCC : 259983 95 : heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuHisLysAspAsnIleSe : 113 !!! !!:!:!.!! !:!!!!.||| !|||:!:|||... :!!||| isTrpPheValGlyCysIleAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLe 259984 : ACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACT : 260040 114 : rGluCysIleLysArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspIle : 132 !...|||:!::!!!.!:!:||| ||||||!:!! !|||||| ..!|||||| uSerCysValGluHisValGluAsnAspTrpArgIleIleThrArgGluLysAspGln 260041 : TAGCTGCGTGGAACACGTGGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAG : 260097 133 : GluIleMetIleThrAsnAlaAsnPheGlyArgArgLeuValIleIleCysThrPheP : 152 .!.:!:|||:!:! ! !!|||!!.||||||||| !:!!!.! ! !|||.!! !| AsnValMetLeuArgTyrAlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaP 260098 : AACGTGATGTTGAGATACGCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTT : 260157 153 : heMetTyrSerGlyPheAlaPheTyrTyrIleAlaValProIleSerValGlyLysIl : 171 ||:!! ! .!!||| !! !! !!:!! !:!:!.!..! !:!:|||..!! ! !|| heValGlnGlyGlyValLeuCysPheCysLeuValThrValLeuSerThrGluValIl 260158 : TCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGAT : 260214 172 : eLeuAlaGluAspAspAsnIleThrPheIleProLeuValPheProPheSerArgPhe : 190 |! !!.!! !:!!!!:!..! ! ! !! !! !||| !! ! !! ! ! !!:! eGlnValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaValTyrLysGlu 260215 : ACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAG : 260271 191 : IleIleAspThrArgTyrSerPheIleAsnGluIleValPheSerIleGlnLeuIleA : 210 :!:|||:!!..!!.! !!||| !!!:||||||||||||.!! !:!:|||!!!:!!: LeuIleAsnValAsnAspSerProMetAsnGluIleValLeuValValGlnPheValS 260272 : CTGATAAACGTGAACGACAGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCT : 260331 211 : laGlyAlaLeuMetHisThrIleThrThrAlaAlaCysSerLeuAlaAlaIlePheAl : 229 !!||| !:!!:!!:!!:!!! !|||..!!.! !! !||||||||||||:!!.!..! erGlyPheIleValAsnSerSerThrValGlyIlePheSerLeuAlaAlaValLeuTh 260332 : CGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGAC : 260388 230 : aValHisAlaCysGlyGlnMetGlnValLeuSerAsnTrpLeuLysHisLeuIleAsn : 248 !!.!|||||||||||||||:!!.!.||||||! !.!.|||:!!! !.!.!!!:!::!! rAlaHisAlaCysGlyGlnLeuAsnValLeuMetGluTrpIleThrGluPheValAsp 260389 : CGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAATGGATCACGGAGTTTGTGGAC : 260445 249 : GlyArgSerAspMetTyrAsnAsnValAspSerArgIleAlaSerIleValSerGlnH : 268 ! ! !!!!:!!! ! ! !!.!!.!.! !! !!:! !.!!:!::!! !:!!| GluSerArgAsnArgLysLysLysAlaProPheLysGluIleGlyValIleValGluH 260446 : GAGTCGAGGAACAGGAAGAAAAAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAAC : 260505 269 : is : 268 || is 260506 : AT : 260507 vulgar: AmOr22 16 268 . KQ414889.1 259751 260507 + 377 M 252 756 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259752 260507 377 + . gene_id 14 ; sequence AmOr22 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259752 260507 . + . KQ414889.1 exonerate:protein2genome:local exon 259752 260507 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259752 260507 377 + . alignment_id 14 ; Query AmOr22 ; Align 259752 17 756 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 371 Query range: 306 -> 396 Target range: 224323 -> 224658 307 : GluTrpSerSerSerHisLeuThrSerAlaIleThrPhePheIleLeuLeuIleSerL : 326 ||||||||||||||||||||||||||||||:!:|||!:!||||||||||||!!:|||| GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 327 : euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlnCysLy : 345 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlnValLy 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggtgaa : 224438 346 : s{L} >>>> Target Intron 1 >>>> {ys}IleGlyGluIleSerTyrMet : 353 |{|} 65 bp {||}||||||::!:!:||||||||| s{L}-+ +-{ys}IleGlyGlnValSerTyrMet 224439 : a{a}at.........................aa{aa}attggacaAGTGTCGTACATG : 224527 354 : ValAspTrpTyrArgLeuGluGlyAsnLysLysLeuCysPheValLeuIleIleAlaM : 373 :!!||||||||||||||| ||||||||||||||||||! !:!!||||||||||||| IleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaM 224528 : ATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGA : 224587 374 : etSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrTh : 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| etSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrTh 224588 : TGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCAC : 224644 393 : rPheSerAspIle : 396 ||||.!!|||:!! rPheGlyAspVal 224645 : TTTCGGTGACGTA : 224658 vulgar: AmOr22 306 396 . KQ414889.1 224323 224658 + 371 M 39 117 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224658 371 + . gene_id 15 ; sequence AmOr22 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224324 224441 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224441 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224442 224443 . + . intron_id 1 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local intron 224442 224506 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224505 224506 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 224507 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224507 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224658 371 + . alignment_id 15 ; Query AmOr22 ; Align 224324 307 117 ; Align 224509 347 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 347 Query range: 13 -> 273 Target range: 289705 -> 290482 14 : ThrAsnHisAspTyrLysArgAsnValAsnLeuSerIleGlnTrpSerArgTrpIleL : 33 :!!||| !! !|||:!!! !:!!:!!..!! !!!!.!!:!!! !!!!.!||||||| SerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleL 289706 : TCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCT : 289763 34 : euLysProIleGlyLeuTrpPro<->AsnSerSerThrIleSerThrThrGlyLysTy : 51 ||||||||||||||:!!!::||| !! !||| ! |||! ! !! !::! euLysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgTh 289764 : TGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAAC : 289820 52 : rLeuTyrArgLeuIleAsnValIleCysTyrSerLeuIleSerPheLeuSerIlePro : 70 !! !|||:!:! !:!!:!!|||! !|||:!!:!!..!|||:!!! !:!!||| rAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValPro 289821 : GGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCG : 289877 71 : CysSerLeuTyrValIleLeuGluValGluAspIleTyrAsnArgIleLysLeuPheG : 90 ! !|||! !:!!|||:!!!!!...! !.!.|||!!: !!!.. !:!!||| !.!!| PheSerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuG 289878 : TTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCG : 289937 91 : lyProLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuHisLy : 109 ||||||||!!!||||||:!!! .!!|||!!!|||||| !! !!!!! !:!! ! lyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGl 289938 : GACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGG : 289994 110 : sAspAsnIleSerGluCysIleLysArgIleGluTrpAspTrpLysAsnIleThrTyr : 128 ... |||.!!...|||:!:|||!.!|||||| ! |||||||||! :!: ! !! ySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAsp 289995 : TTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGAC : 290051 129 : SerLysAspIleGluIleMetIleThrAsnAlaAsnPheGlyArgArgLeuValIleI : 148 ..! ! !! !! ||||||:!!! ! !!!.!!...!..!!|||!.!|||:!!! !: GluAspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysL 290052 : GAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAAC : 290111 149 : leCysThrPhePheMetTyrSerGlyPheAlaPheTyrTyrIleAlaValProIleSe : 167 !:|||.!!.!!|||:!!|||! !||| ! !! !||| !!! !!.!:!!|||:!:! euCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPh 290112 : TGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTT : 290168 168 : rValGlyLysIleLeuAlaGluAspAspAsnIleThrPheIleProLeuValPhePro : 186 ! ! !||| ::!! !:!!! !|||:!:|||.!!! !||||||..!!:!||| eSerLysLys------SerValAsnGlyAsnValThrIleArgProLeuThrTyrPro 290169 : CTCGAAGAAG------AGCGTGAACGGTAACGTGACTATCAGACCTCTAACTTATCCC : 290219 187 : PheSerArgPheIleIleAspThrArgTyrSerPheIleAsnGluIleValPheSerI : 206 !! !..! .!!.!!|||..!!:! ! ||| !!||||||||||||!!!! GlyTyrGluGluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysM 290220 : GGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTA : 290279 207 : leGlnLeuIleAlaGlyAlaLeuMetHisThrIleThrThrAlaAlaCysSerLeuAl : 225 !:!!.! !:!! !! ! !:!!! ! !.!||||||! !||||||! !||||||.! etHisCysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuTh 290280 : TGCACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGAC : 290336 226 : aAlaIlePheAlaValHisAlaCysGlyGlnMetGlnValLeuSerAsnTrpLeuLys : 244 !.!!|||||||||..!|||.!!|||||||||!!::!!:!!! !!!!!.. !!|||:!! rThrIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGlu 290337 : GACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAG : 290393 245 : HisLeuIleAsnGlyArgSerAspMetTyrAsnAsnValAspSerArgIleAlaSerI : 264 !!|||! !!!. !! !!! ! :!! ! !!....|||..!..!|||:!:||| !: AspLeuThrLysArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValV 290394 : GATCTGACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTG : 290453 265 : leValSerGlnHisValArgIleLeuLys : 273 !!|||||| ||||||..!||||||||| alValSerGlyHisValGluIleLeuLys 290454 : TTGTGAGCGGTCACGTGGAGATCTTGAAG : 290482 vulgar: AmOr22 13 273 . KQ414889.1 289705 290482 + 347 M 27 81 G 0 3 M 130 390 G 2 0 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289706 290482 347 + . gene_id 16 ; sequence AmOr22 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289706 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289706 290482 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289706 290482 347 + . alignment_id 16 ; Query AmOr22 ; Align 289706 14 81 ; Align 289790 41 390 ; Align 290180 173 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 328 Query range: 11 -> 282 Target range: 236816 -> 237626 12 : IleGlnThrAsnHisAspTyrLysArgAsnValAsnLeuSerIleGlnTrpSerArgT : 31 :!: |||.!. !:!! ! !!:! !:!!! !|||:!!||||||!:!|||| ValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgT 236817 : GTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGAT : 236874 32 : rpIleLeuLysProIleGlyLeuTrpProAsnSerSerThrIleSerThrThrGlyLy : 50 || :!!||| !|||||| !||||||.!.! !||| |||!.! !! !!: rpAlaMetLysSerIleGlyThrTrpProGlnPheSer------SerAsnLeuGluAr 236875 : GGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCG------TCGAACCTCGAGAG : 236925 51 : sTyrLeuTyrArgLeuIleAsnValIleCysTyrSerLeuIleSerPheLeuSerIle : 69 ! !!:!!! !|||:!!:!!|||||||||||||||!!! !||| !|||! !! !||| gAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIle 236926 : AAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATC : 236982 70 : ProCysSerLeuTyrValIleLeuGluValGluAspIleTyrAsnArgIleLysLeuP : 89 ||||||||||||:!!:!!!!:|||||| !! ! !.!!|||!..!:!:!:|||:!!. ProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleL 236983 : CCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATAC : 237042 90 : heGlyProLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuHi : 108 !!||| !!|||||| !!! |||.!...!.!!:!!!..||| !:!!|||:!:|||!. euGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuAr 237043 : TCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCG : 237099 109 : sLysAspAsnIleSerGluCysIleLysArgIleGluTrpAspTrpLysAsnIleThr : 127 .::: ! !.!||| !!.!.! !.!!!!.!.!!!:||| ||||||!:!!..! ||| gArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrThr 237100 : ACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGacg : 237156 128 : TyrSerLysAspIleGluIleMetIleThrAsnAlaAsnPheGlyArgArgLeuValI : 147 ...::: |||:::|||:!:! ! !!|||!!.|||.!!||| ! !!.!| ArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaI 237157 : agaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGA : 237216 148 : leIleCysThrPhePheMetTyrSerGlyPheAlaPheTyrTyrIleAlaValProIl : 166 || !||||||.!!|||!!::!!.!!|||.!. ! |||! !:!! !..! !! leSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaSe 237217 : TTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTC : 237273 167 : eSerValGlyLysIleLeuAlaGluAspAspAsnIleThrPheIleProLeuValPhe : 185 !!!!..! ! :!!:!!!.!! !:!! ! !.!! ! !!!. ! !||| !!!. rThrThrMetValValValValGlyAsnLysThrThrIleLeuArgValLeuProLeu 237274 : CACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGCGTGCTGCCCTTA : 237330 186 : ProPheSerArgPheIleIleAspThrArgTyrSerPheIleAsnGluIleValPheS : 205 |||.!.! !!:! :!!:!! ..! ! !:! !!!:|||!!:|||||| !!! ProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnAspIleValValL 237331 : CCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGACATCGTTGTTT : 237390 206 : erIleGlnLeuIleAlaGlyAlaLeuMetHisThrIleThrThrAlaAlaCysSerLe : 224 ! !|||!!!:!!:!!||| !:!! !:!!!.!! !.!!! !::!!.! ||||| euSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSerValIleSerLe 237391 : TGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAGTGTTATAAGCCT : 237447 225 : uAlaAlaIlePheAlaValHisAlaCysGlyGlnMetGlnValLeuSerAsnTrpLeu : 243 |.!!::! !.!..!! !||||||! !||||||:!!...|||:!!! ! ! !:!! uThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValValMetLeuSerIle 237448 : TACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTTATGTTGTCGATC : 237504 244 : LysHisLeuIleAsn<->GlyArgSerAspMetTyrAsnAsnValAspSerArgIleA : 262 :!! !!!!!:!:!:! !.!||| !! ! ! :!!:!! ! !..!..!||| GluAspPheValSerGluAlaArgArgArgGlyLysAspAspHisPheAspGluIleP 237505 : GAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATCATTTCGACGAAATAC : 237564 263 : laSerIleValSerGlnHisValArgIleLeuLysPheLeuAlaLeuThrGluLysAl : 281 !!!!!||||||..!:!!|||:!!|||:!:||||||! :!!..!||| !!!: ! roThrIleValGluGluHisLeuArgValLeuLys***ValCysLeuLeuAspLeuIl 237565 : CGACAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAGTATGTTTGTTGGATTTGAT : 237621 282 : aLeu : 282 !||| eLeu 237622 : TTTG : 237626 vulgar: AmOr22 11 282 . KQ414889.1 236816 237626 + 328 M 32 96 G 2 0 M 203 609 G 0 3 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236817 237626 328 + . gene_id 17 ; sequence AmOr22 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236817 237626 . + . KQ414889.1 exonerate:protein2genome:local exon 236817 237626 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236817 237626 328 + . alignment_id 17 ; Query AmOr22 ; Align 236817 12 96 ; Align 236913 46 609 ; Align 237525 249 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 252 Query range: 150 -> 273 Target range: 202607 -> 202960 151 : PhePheMetTyrSerGlyPheAlaPheTyrTyrIleAlaValProIleSerValGlyL : 170 ::: :::! !!!!! |||...||||||:::......||| !!:!!.!!:!!! !| TyrThrLeuCysThrAspPheThrPheTyrPhePheValValSerLeuGlyLeuGluL 202608 : tacaccctgTGCACAGattttaccttttatttttttgttgtaTCGCTTGGCTTGGAGA : 202665 171 : ysIleLeuAlaGluAspAspAsnIleThrPheIleProLeuValPheProPheSerAr : 189 ||!!::!!||||||||| !!:!:!:||| ||| !!|||||| ! ysMetValAlaGluAspLeuSerValThr---------------PheSerPheSerGl 202666 : AAATGGTAGCAGAGGATCTTAGTGTGACG---------------TTCTCCTTCTCAGG : 202707 190 : gPheIleIleAspThrArgTyrSerPheIleAsnGluIleValPheSerIleGlnLeu : 208 !||||||||||||..!||||||||| !:!:||||||||| !!|||||||||!:!:!! yPheIleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIle 202708 : ATTTATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATC : 202764 209 : IleAlaGlyAlaLeuMetHisThrIleThrThrAlaAlaCysSerLeuAlaAlaIleP : 228 :!!|||! ! !|||!!:||| !:!!|||..!!.!||||||!!!|||.!!|||:!:| ValAlaValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuP 202765 : GTAGCTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGT : 202824 229 : heAlaValHisAlaCysGlyGlnMetGlnValLeuSerAsnTrpLeuLysHisLeuIl : 247 |||||||||||! !||||||||||||.!.||||||! ! !||||||:!!||||||!! heAlaValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMe 202825 : TTGCGGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGAT : 202881 248 : eAsnGlyArgSerAspMetTyrAsn--AsnValAspSerArgIleAlaSerIleValS : 266 ::!!||||||||||||||| !:!##||||||:!!.!!|||!!:!.!!!!||||||| tAspGlyArgSerAspMet---Ser##AsnValAsnGlyArgMetValThrIleValS 202882 : GGATGGTCGTTCGGATATG---AGTAAAATGTGAATGGCAGAATGGTGACCATCGTGA : 202937 267 : erGlnHisValArgIleLeuLys : 273 ||||||||:!!|||||||||||| erGlnHisIleArgIleLeuLys 202938 : GCCAACACATACGGATACTGAAA : 202960 vulgar: AmOr22 150 273 . KQ414889.1 202607 202960 + 252 M 29 87 G 5 0 M 69 207 G 1 0 M 1 3 F 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202608 202960 252 + . gene_id 18 ; sequence AmOr22 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202608 202960 . + . KQ414889.1 exonerate:protein2genome:local exon 202608 202960 . + . insertions 0 ; deletions 6 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local similarity 202608 202960 252 + . alignment_id 18 ; Query AmOr22 ; Align 202608 151 87 ; Align 202695 185 207 ; Align 202902 255 3 ; Align 202907 256 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 249 Query range: 175 -> 343 Target range: 300186 -> 301797 176 : AspAsnIleThrPheIleProLeuValPheProPheSerArgPheIleIleAspThrA : 195 !!:||| !|||!:!! !||||||!.!!:!||| !! ! !!::.!!|||||||||! GluAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrG 300187 : GAGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACAC : 300244 196 : rgTyrSerPheIleAsnGluIleValPheSerIleGlnLeuIleAlaGlyAlaLeuMe : 214 :! !||| !! ! !!|||||||||||| ...... .!!|||!.! !:!!|| lnThrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMe 300245 : AAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCAT : 300301 215 : tHisThrIleThrThrAlaAlaCysSerLeuAlaAlaIlePheAlaValHisAlaCys : 233 |:!!!.!:!:||||||||||||! !||||||||||||||||||!.!..!||| !||| tTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCys 300302 : GTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGT : 300358 234 : GlyGlnMetGlnValLeuSerAsnTrpLeuLysHisLeuIleAsnGlyArgSerAspM : 253 ||||||!!:|||:!!! !! ! ! |||:!! !!|||:!:.!. !!! !.!!!!:! GlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrGlyGluL 300359 : GGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGGGAGAGA : 300418 254 : etTyrAsnAsnValAspSerArgIleAlaSerIleValSerGlnHisValArgIleLe : 272 ! !!:!!..! !||| !! !:!!!.! |||||| !!.!.||||||!:!:!!|| ysAspAspGlyProAspProLeuValVal---IleValArgAspHisValLysValLe 300419 : AGGACGACGGTCCTGATCCTTTGGTCGTT---ATCGTTCGAGATCACGTGAAGGTTTT : 300472 273 : u{Ly} >>>> Target Intron 1 >>>> {s}PheLeuAlaLeuThrGluLys : 280 |{!:} 1110 bp {!} !! !..!! ! !... !! u{Ar}++ ++{g}AspProCysSerPheArg*** 300473 : A{AG}gt.........................ag{A}GACCCGTGTTCCTTCCGTTAG : 301606 281 : AlaLeuGlnGlnValSerPheValGluPheLeuGlyCysMetLeuAsnIleCysLeuL : 300 !! ! !!.:!!!!! ||| ... ! |||||| ! !!!| ProThrPheHisLeuCysAlaValIleLysPheGluSerThrLeuAsnAlaLysPheL 301607 : CCAACTTTTCATCTCTGCgctgtaattaaatttgaatctACTTTAAATGCAAAGTTTT : 301666 301 : euGlyTyrTyrValIleThrGluTrpSerSerSerHisLeuThrSerAlaIleThrPh : 319 || !! ! !.!! !||||||..!!:!||| !! !! !:!! !:!:||||| euArgValIle***Phe***GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPh 301667 : TACGAGTAATTTGATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTTGACATT : 301723 320 : ePheIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGlu : 338 ||||! !||||||! |||!!!|||||||||||||||||||||||||||||||||||| ePheThrLeuLeuThrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGlu 301724 : TTTCACTCTGTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAG : 301780 339 : LeuValAlaGluGln : 343 :!!:!!:!!|||||| IleLeuSerGluGln 301781 : ATTCTTTCCGAACAG : 301797 vulgar: AmOr22 175 343 . KQ414889.1 300186 301797 + 249 M 87 261 G 1 0 M 9 27 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300187 301797 249 + . gene_id 19 ; sequence AmOr22 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300187 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300187 300476 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300187 301797 249 + . alignment_id 19 ; Query AmOr22 ; Align 300187 176 261 ; Align 300448 264 27 ; Align 301588 274 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 225 Query range: 306 -> 396 Target range: 272836 -> 273176 307 : GluTrpSerSerSerHisLeuThrSerAlaIleThrPhePheIleLeuLeuIleSerL : 326 ||||||!!!..! ! !!!!! !||| !! !|||!:!|||!!::!!|||||||||: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 327 : euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln >>> : 344 !:|||||||||||||||||| |||||||||||||||:!!:!!.!!|||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 345 : > Target Intron 1 >>>> CysLysLysIleGlyGluIleSerTyrMetValA : 355 70 bp ||||||||||||||||||:!! !||||||..!: ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 356 : spTrpTyrArgLeuGluGlyAsnLysLysLeuCysPheValLeuIleIleAlaMetSe : 374 !!|||||| !||| |||!!. ! ! ||| !.!.:!!|||||||||:!!! !! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 375 : rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThrPhe : 393 !!:! ! !||||||:!!|||||||||!..!!:||| :!!! !:!! !|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 394 : SerAspIle : 396 .!!|||:!! GlyAspVal 273166 : GGCGATGTA : 273176 vulgar: AmOr22 306 396 . KQ414889.1 272836 273176 + 225 M 37 111 5 0 2 I 0 66 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273176 225 + . gene_id 20 ; sequence AmOr22 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273176 225 + . alignment_id 20 ; Query AmOr22 ; Align 272837 307 111 ; Align 273018 344 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 224 Query range: 14 -> 240 Target range: 194144 -> 194813 15 : AsnHisAspTyrLysArgAsnValAsnLeuSerIleGlnTrpSerArgTrpIleLeuL : 34 ||| !:!!|||||| !:!!..!.!.! !:!!:!!!:! :!!!:! !:!!|||! AsnValAsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuLeuT 194145 : AACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAA : 194202 35 : ysProIleGlyLeuTrpProAsnSerSerThrIleSerThrThrGlyLysTyrLeuTy : 53 !|||||||||:!!||||||!....!..!:!!:!! !! !! !! !::! |||!: hrProIleGlyIleTrpProArgGluAspSerLeuArgAspArgValArg---LeuPh 194203 : CACCGATCGGTATCTGGCCAAGGGAGGATTCTCTTCGCGACAGAGTCCGA---CTGTT : 194256 54 : rArgLeuIleAsnValIleCysTyrSerLeuIleSerPheLeuSerIleProCysSer : 72 ! !! !! !..!|||:!! !:!:!!|||!!:!!!|||||| !:!!||| ! ! eAlaGlnThrGlyValVal---PheAlaLeuMetCysPheLeuLeuValProHisVal 194257 : CGCTCAAACTGGCGTGGTC---TTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTG : 194310 73 : LeuTyrValIleLeuGluValGluAspIleTyrAsnArgIleLysLeuPheGlyProL : 92 :!!|||..! !!!!!!: !||||||:!: !.. !!!:|||:!!.!!!.! !!! IleTyrThrTyrPheAspCysGluAspLeuThrArgTyrMetLysValIleAlaAlaG 194311 : ATCTACACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGC : 194370 93 : euSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuHisLysAspAs : 111 ! !||| !!:!!:!!|||.!!:!!|||!:! !:!!|||:!!:!!!:! ! .! lnValPheSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnArgLysGl 194371 : AAGTGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGA : 194427 112 : nIleSerGluCysIleLysArgIleGluTrpAspTrpLysAsnIleThrTyrSerLys : 130 .|||!!! |||:!: !..!!!:||| !.!.!::!:!:!!:!: !! !..!:!! uIleArgPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCysGluGlu 194428 : GATCAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAG : 194484 131 : AspIleGluIleMetIleThrAsnAlaAsnPheGlyArgArgLeuValIleIleCysT : 150 ||| !:!!:!:|||! !.! !|||!!..!!|||||| !!!!..!! !:!:! ! AspArgGlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrL 194485 : GATCGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACT : 194544 151 : hrPhePheMetTyrSerGlyPheAlaPheTyrTyrIleAlaValProIleSerValGl : 169 ! .!! |||.!!||| ! ! |||:!!||| !:!!|||:!:! ! !! euGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGl 194545 : TGGGACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGA : 194601 170 : yLysIleLeuAlaGluAspAspAsnIleThrPheIleProLeuValPheProPheSer : 188 !!:!|||:!! !||| ||||||! !||| ||||||||| !!:! ! !!:! uArgIleValLysGlu---AspAsnSerThrGlnIleProLeuProTyrLeuSerAsn 194602 : GAGGATTGTCAAGGAG---GATAACAGTACTCAGATACCTCTGCCATATTTGAGCAAC : 194655 189 : ArgPheIleIleAspThrArgTyrSerPheIleAsnGluIleValPheSerIleGlnL : 208 ! !!.!!.!!! ! !..! !!||| ||| !!||||||..!||| ! |||: TyrValPhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerGlnI 194656 : TATGTTTTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGA : 194715 209 : euIleAlaGlyAlaLeuMetHisThrIleThrThrAlaAlaCysSerLeuAlaAlaIl : 227 !!:!: !.!!::!:!!!!: :!!! !.! !!.! !! !||||||!.!|||! leLeuIleSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAlaTh 194716 : TACTGATTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTAC : 194772 228 : ePheAlaValHisAlaCysGlyGlnMetGlnValLeuSer : 240 !.!! !:!!|||..!|||||| !.!.:!!||| !||| rIleIleMetHisCysCysGlyLeuPheGluValThrSer 194773 : TATTATTATGCATTGCTGTGGCTTGTTCGAAGTGACCAGC : 194813 vulgar: AmOr22 14 240 . KQ414889.1 194144 194813 + 224 M 36 108 G 1 0 M 8 24 G 1 0 M 114 342 G 1 0 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194145 194813 224 + . gene_id 21 ; sequence AmOr22 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194145 194813 . + . KQ414889.1 exonerate:protein2genome:local exon 194145 194813 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 194145 194813 224 + . alignment_id 21 ; Query AmOr22 ; Align 194145 15 108 ; Align 194253 52 24 ; Align 194277 61 342 ; Align 194619 176 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 223 Query range: 306 -> 396 Target range: 277371 -> 277713 307 : GluTrpSerSerSerHisLeuThrSerAlaIleThrPhePheIleLeuLeuIleSerL : 326 |||||||||..!||| !!:!! !!!! !! !||| !|||!!::!!|||||||||: GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 327 : euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln >>> : 344 !: |||||||||||| ! ! |||||||||||||||:!!:!!.!!|||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 345 : > Target Intron 1 >>>> CysLysLysIleGlyGluIleSerTyrMetValA : 355 72 bp |||||||||:!!||||||:!: !||||||..!: ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 356 : spTrpTyrArgLeuGluGlyAsnLysLysLeuCysPheValLeuIleIleAlaMetSe : 374 !!|||||| !||| ! !!!. ! ! ||| !!!.:!!|||||||||:!!! || snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 375 : rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThrPhe : 393 |!:! ||||||:::|||||||||...:::::::::::: !:!! !|||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 394 : SerAspIle : 396 .!!|||:!! GlyAspVal 277703 : GGCGATGTA : 277713 vulgar: AmOr22 306 396 . KQ414889.1 277371 277713 + 223 M 37 111 5 0 2 I 0 68 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277713 223 + . gene_id 22 ; sequence AmOr22 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277713 223 + . alignment_id 22 ; Query AmOr22 ; Align 277372 307 111 ; Align 277555 344 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 218 Query range: 18 -> 203 Target range: 294672 -> 295227 19 : LysArgAsnValAsnLeuSerIleGlnTrpSerArgTrpIleLeuLysProIleGlyL : 38 !:!!.!:!!||| !|||:!!:!!!::!!!||| !!:!:|||||||||||||||| ArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyL 294673 : AGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTC : 294730 39 : euTrpPro<->AsnSerSerThrIleSerThrThrGlyLysTyrLeuTyrArgLeuIl : 56 |||||||| ! !! !||| !! !|||! ! !..!||| !|||! ! !:!!:! euTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLe 294731 : TTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCT : 294787 57 : eAsnValIleCysTyrSerLeuIleSerPheLeuSerIleProCysSerLeuTyrVal : 75 :! !!.! ||| ! ! !:!! !|||:!!! !:!:||||||.!!! !!:! ! uIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCys 294788 : GATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGT : 294844 76 : IleLeuGluValGluAspIleTyrAsnArgIleLysLeuPheGlyProLeuSerPheC : 95 :!!!!!.!.|||::::::::: ::!!!:||||||.!.||||||:!! !!:!! ValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrS 294845 : GTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACT : 294904 96 : ysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuHisLysAspAsnIleSerGl : 114 !:!!:!::!!.!.|||!:!||| !! !|||:!!||| ! ! ! ! .!!!.!.! erMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHi 294905 : CTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCA : 294961 115 : uCysIleLysArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspIleGlu : 133 .||||||:!! !|||||| ||||||||| ||| ! !! !!:!! !! !! ! sCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAla 294962 : TTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCG : 295018 134 : IleMetIleThrAsnAlaAsnPheGlyArgArgLeuValIleIleCysThrPhePheM : 153 |||||||||! !||||||! !! !!:!|||:!!..!:!! !! !|||.!!.!.! IleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleI 295019 : ATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAA : 295078 154 : etTyrSerGlyPheAlaPheTyrTyrIleAlaValProIleSerValGlyLysIleLe : 172 !:||||||..! !.!! |||:!! ! !||||||... ...... || leTyrSerSerAlaValSerTyrHisAlaIleValProPhe---PheSerAsnAlaLe 295079 : TCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccattt---ttttcaaacgctTT : 295132 173 : uAlaGluAspAspAsnIleThrPheIleProLeuValPheProPheSerArgPheIle : 191 |! !.!. ! ! |||! !|||.!! ! !!||| !.!!||| !! !..!!!..!! uGluAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPhe 295133 : GGAGAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTC : 295189 192 : IleAspThrArgTyrSerPheIleAsnGluIleVal : 203 :!!|||.!! !! !||| !! ! !!||||||:!! ValAspAlaTyrSerSerProThrTyrGluIleIle 295190 : GTAGACGCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: AmOr22 18 203 . KQ414889.1 294672 295227 + 218 M 22 66 G 0 3 M 126 378 G 1 0 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294673 295227 218 + . gene_id 23 ; sequence AmOr22 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294673 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294673 295227 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294673 295227 218 + . alignment_id 23 ; Query AmOr22 ; Align 294673 19 66 ; Align 294742 41 378 ; Align 295120 168 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 210 Query range: 23 -> 124 Target range: 200538 -> 200845 24 : LeuSerIleGlnTrpSerArgTrpIleLeuLysProIleGlyLeuTrpProAsnSerS : 43 :!!!!!|||||||||!:!||||||||||||||| !!!!:!.!|||||| !:!!!.!| ValCysIleGlnTrpAsnArgTrpIleLeuLysSerMetAlaLeuTrpPheAspLysS 200539 : GTTTGCATACAGTGGAATCGTTGGATCTTGAAATCAATGGCTTTGTGGTTTGACAAAT : 200596 44 : erThrIleSerThrThrGlyLysTyrLeuTyr-ArgLeuIleAsnValIleCysTyrS : 62 ||!.!|||||| !!..!! !|||!! |||:!!#|||||||||!:!!.!:!!|||!! . erAsnIleSerProValGluLys***LeuHis#ArgLeuIleSerAlaValCys***G 200597 : CCAACATTTCACCGGTCGAGAAATAACTACACTCGGCTAATCAGTGCCGTTTGTTAAG : 200654 63 : erLeuIleSerPheLeuSerIleProCysSerLeuTyrValIleLeuGluValGluAs : 81 !!|||!!:...:::... ||| |||||||||:!!|||.!!|||!!:||||||:! lyLeuMetGlyTyrPheLeuIleLeuCysSerLeuHisValPheLeuAspValGluAs 200655 : GATTGATGggttactttttaatattatgcAGTTTACACGTGTTTCTTGACGTAGAAAA : 200711 82 : pIleTyrAsnArgIleLysLeuPheGlyProLeu<->SerPheCysValMetAlaPhe : 99 !||| !!!.!:!||||||||||||! !|||||| !.!!|||:!! .!!.!! nIleLeuLysLysIleLysLeuPheValProLeuValLeuLeuCysLeuAlaThrIle 200712 : TATACTTAAAAAGATTAAATTGTTTGTTCCCCTAGTACTACTTTGCTTGGCTACGATT : 200768 100 : LeuLysTyrHisLeuLeuIleLeuHisLysAspAsnIleSerGluCysIleLysArgI : 119 ||||||! !||||||! !:!!|||||| ! |||:!!! !! ! !||| !:!!!.!| LeuLysCysHisLeuSerValLeuHisAspAspAspThrTyrThrCysGlyGluHisI 200769 : TTGAAGTGTCATTTGTCGGTACTTCATGATGACGATACTTACACGTGTGGCGAGCATA : 200828 120 : leGluTrpAspTrpLys : 124 ||:!!|||!!:|||!:! leLysTrpGluTrpArg 200829 : TAAAATGGGAGTGGAGG : 200845 vulgar: AmOr22 23 124 . KQ414889.1 200538 200845 + 210 M 30 90 F 0 1 M 39 117 G 0 3 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 200539 200845 210 + . gene_id 24 ; sequence AmOr22 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 200539 200845 . + . KQ414889.1 exonerate:protein2genome:local exon 200539 200845 . + . insertions 3 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local similarity 200539 200845 210 + . alignment_id 24 ; Query AmOr22 ; Align 200539 24 90 ; Align 200630 54 117 ; Align 200750 93 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 200 Query range: 303 -> 396 Target range: 206041 -> 206401 304 : ValIleThrGluTrpSerSerSerHisLeuThrSerAlaIleThrPhePheIleLeuL : 323 |||.!! !||||||..!!:!!:!:!! !|||:!!!.!|||..!!:!.!!! |||! ValPhe***GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuG 206042 : GTGTTTTAGGAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGC : 206099 324 : euIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGl : 342 !||||||! !|||||| !:!!||||||.!.||||||||||||:!!|||:!! !!! lnIleSerCysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAs 206100 : AGATATCTTGTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGA : 206156 343 : uGln >>>> Target Intron 1 >>>> CysLysLysIleGlyGluIleSerT : 352 :||| 81 bp ! ! :!:||| !! !|||! pGln++ ++AsnHisValValGlyLeuThrSerC 206157 : TCAAgt.........................agAACCACGTCGTGGGATTGACATCTT : 206267 353 : yrMetValAspTrpTyrArgLeuGluGlyAsnLysLysLeuCysPheValLeuIleIl : 371 !! !|||:!!|||||||||||| !..!!.. ! !! !! !.!.:!!|||||||| ysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIl 206268 : GCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAAT : 206324 372 : eAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeu : 390 |||||||||||||! ! !!||||||||||||||||||!!.||| !!|||:!!! !||| eAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeu 206325 : TGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTA : 206381 391 : ThrThrPheSerAspIle : 396 .!!!:!|||!!!|||:!! AlaSerPheThrAspVal 206382 : GCTAGTTTCACCGATGTA : 206401 vulgar: AmOr22 303 396 . KQ414889.1 206041 206401 + 200 M 40 120 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206042 206401 200 + . gene_id 25 ; sequence AmOr22 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206042 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206042 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206042 206401 200 + . alignment_id 25 ; Query AmOr22 ; Align 206042 304 120 ; Align 206243 344 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 184 Query range: 14 -> 161 Target range: 299662 -> 300105 15 : AsnHisAspTyrLysArgAsnValAsnLeuSerIleGlnTrpSerArgTrpIleLeuL : 34 |||:!! !!|||:!!!.!:!!:!!:!!! !!!!:!:||| !!!!!:!|||:!:|||| AsnTyrHisTyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuL 299663 : AATTACCATTACCAAAATGACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGA : 299720 35 : ysProIleGlyLeuTrpProAsnSerSerThrIleSerThrThrGlyLysTyrLeuTy : 53 |||||||||||:!!|||! ! !..! ! !|||!:!! ! !:!!:!!||| ysProIleGlyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuVa 299721 : AACCTATCGGAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGT : 299777 54 : rArgLeuIle<->AsnValIleCysTyrSerLeuIleSerPheLeuSerIleProCys : 71 ! !:!!:!! ! ..!||||||!:!||| !:!:! !|||:!! !:!:|||! ! lSerIleValLeuMetThrIleCysPheSerSerLeuPhePheIleValLeuProSer 299778 : CTCGATCGTTCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCC : 299834 72 : SerLeuTyrValIleLeuGluValGluAspIleTyrAsnArgIleLysLeuPheGlyP : 91 .!!! !|||:!!.!!!!!! !! !:!!..!|||:!! !!:!:!:|||:!!||||||| GlyHisTyrIlePhePheAlaGluLysSerIleHisValLysValLysValPheGlyP 299835 : GGTCATTACATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTC : 299894 92 : roLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuHisLysAs : 110 ||:!!.!!||||||:!! :!!.!!:!!|||||| !! !||| !|||:!! ! roValGlyPheCysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGl 299895 : CGGTTGGTTTTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGG : 299951 111 : pAsnIleSerGluCysIleLysArgIleGluTrpAspTrpLysAsnIleThrTyrSer : 129 ! .!!..!..!||||||:!!!.!:!!||| ! ||| ... ..! yAlaPheGluArgCysIleGlnHisValGluArgAsp---UnkUnkUnkUnkUnkUnk 299952 : CGCGTTCGAACGATGCATCCAACACGTCGAGAGAGAC---NNNNNNNNNNNNNNNNTT : 300005 130 : LysAspIle--GluIleMetIleThrAsnAlaAsnPheGlyArgArgLeuValIleIl : 148 ::! !|||## !||||||:!:! ! !!!.!!.!.!..!!|||!.!|||..!! !:! ArgIleIle##ThrIleMetLeuArgTyrValThrMetSerArgAsnLeuThrThrVa 300006 : CGAATCATCGTACGATCATGTTGAGATACGTGACTATGAGCAGAAATCTGACGACCGT : 300064 149 : eCysThrPhePheMetTyrSerGlyPheAlaPheTyrTyr : 161 :|||.!! ! |||:!:|||:!!||| ! !! |||:!! lCysAlaValPheLeuTyrAlaGlyGlyMetSerTyrHis 300065 : GTGCGCCGTGTTTCTTTACGCAGGTGGTATGTCGTATCAC : 300105 vulgar: AmOr22 14 161 . KQ414889.1 299662 300105 + 184 M 42 126 G 0 3 M 66 198 G 1 0 M 9 27 F 0 2 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299663 300105 184 + . gene_id 26 ; sequence AmOr22 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299663 300105 . + . KQ414889.1 exonerate:protein2genome:local exon 299663 300105 . + . insertions 3 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local similarity 299663 300105 184 + . alignment_id 26 ; Query AmOr22 ; Align 299663 15 126 ; Align 299792 57 198 ; Align 299990 124 27 ; Align 300019 133 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 176 Query range: 298 -> 396 Target range: 305076 -> 305783 299 : LeuLeuGlyTyrTyrValIleThrGluTrpSerSerSerHisLeuThrSerAlaIleT : 318 !!!||| |||::: !!!:|||..!||||||:!! !..!||| !! !| PheLeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrT 305077 : TTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAA : 305134 319 : hrPhePheIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl : 337 ||!:! :!:||||||||||||:!!||||||||||||||||||!!.||||||||||| hrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGl 305135 : CATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGG : 305191 338 : yGluLeuValAlaGluGlnCys{Ly} >>>> Target Intron 1 >>>> {s} : 345 ||||:!!:!! !|||:!! {!.} 413 bp {.} yGluIleLeuMetGluLysVal{Se}-+ ++{r} 305192 : TGAGATTCTTATGGAAAAGGTG{ag}tt.........................ag{T} : 305630 346 : LysIleGlyGluIleSerTyrMetValAspTrpTyrArgLeuGluGlyAsnLysLysL : 365 !..:!!||| ! !!!!!:!|||:!!..!||||||!.!||| ! !!!.! !! !! SerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleH 305631 : AGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATAC : 305688 366 : euCysPheValLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAs : 384 ! !!.!!:!!||||||||||||||||||!:!!:! !! !|||:!!!:!||||||!! isGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLy 305689 : ATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAA : 305745 385 : nMetValGluLeuCysLeuThrThrPheSerAspIle : 396 .:!:|||!!:|||! !|||:!!||||||.!!:!!:!: sValValAspLeuSerLeuSerThrPheGlyAsnVal 305746 : AGTAGTTGATTTATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: AmOr22 298 396 . KQ414889.1 305076 305783 + 176 M 46 138 S 0 2 5 0 2 I 0 409 3 0 2 S 1 1 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305077 305783 176 + . gene_id 27 ; sequence AmOr22 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305077 305216 . + . KQ414889.1 exonerate:protein2genome:local exon 305077 305216 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305217 305218 . + . intron_id 1 ; splice_site "tt" KQ414889.1 exonerate:protein2genome:local intron 305217 305629 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305628 305629 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305630 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305630 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305077 305783 176 + . alignment_id 27 ; Query AmOr22 ; Align 305077 299 138 ; Align 305631 346 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 269 -> 305 Target range: 224128 -> 224236 270 : ArgIleLeuLysPheLeuAlaLeuThrGluLysAlaLeuGlnGlnValSerPheValG : 289 !:! !! !!:!||||||.!!! !|||||||||||||||||||||||||||||||||| LysCysCysArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValG 224129 : AAATGTTGCAGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGG : 224186 290 : luPheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIle : 305 |||||||||||||||||||||||||||||||||||||||||||||||||| luPheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIle 224187 : AATTTCTAGGCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATT : 224236 vulgar: AmOr22 269 305 . KQ414889.1 224128 224236 + 154 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224129 224236 154 + . gene_id 28 ; sequence AmOr22 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224129 224236 . + . KQ414889.1 exonerate:protein2genome:local exon 224129 224236 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224129 224236 154 + . alignment_id 28 ; Query AmOr22 ; Align 224129 270 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 342 -> 402 Target range: 238625 -> 238805 343 : GlnCysLysLysIleGlyGluIleSerTyrMetValAspTrpTyrArgLeuGluGlyA : 362 |||||| !|||:!!||||||:!: !||||||..!||||||||| !||| ! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 363 : snLysLysLeuCysPheValLeuIleIleAlaMetSerAsnSerSerIleLysLeuTh : 381 ..!:!! ||| !!!.:!!||||||||| ! |||||| ! !:!!|||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 382 : rAlaGlyAsnMetValGluLeuCysLeuThrThrPheSerAspIleValLysThrAla : 400 |||||||!!.:!::!!.!.:!!! ||| !||||||.!!|||:!! !:!!||| ! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 401 : ValAla : 402 :!!||| LeuAla 238798 : CTTGCT : 238805 vulgar: AmOr22 342 402 . KQ414889.1 238625 238805 + 142 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238805 142 + . gene_id 29 ; sequence AmOr22 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238805 142 + . alignment_id 29 ; Query AmOr22 ; Align 238626 343 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 342 -> 399 Target range: 244655 -> 244826 343 : GlnCysLysLysIleGlyGluIleSerTyrMetValAspTrpTyrArgLeuGluGlyA : 362 |||||| !|||:!!||||||:!: !||||||..!||||||||| !||| ! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 363 : snLysLysLeuCysPheValLeuIleIleAlaMetSerAsnSerSerIleLysLeuTh : 381 ..!:!! ||| !!!.:!!||||||||| ! ||||||! ! !:!!:!!:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 382 : rAlaGlyAsnMetValGluLeuCysLeuThrThrPheSerAspIleValLysThr : 399 |||||||!!.:!::!!.!.:!!! ||| !||||||.!!|||:!! !:!!||| rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThr 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 244826 vulgar: AmOr22 342 399 . KQ414889.1 244655 244826 + 137 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244826 137 + . gene_id 30 ; sequence AmOr22 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244826 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244826 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244826 137 + . alignment_id 30 ; Query AmOr22 ; Align 244656 343 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 342 -> 399 Target range: 254271 -> 254442 343 : GlnCysLysLysIleGlyGluIleSerTyrMetValAspTrpTyrArgLeuGluGlyA : 362 |||||| !|||:!!||||||:!: !||||||..!||||||||| !||| ! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 363 : snLysLysLeuCysPheValLeuIleIleAlaMetSerAsnSerSerIleLysLeuTh : 381 ..!:!! ||| !!!.:!!|||||||||.!! |||||| ! !:!!:!!:!!|| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 382 : rAlaGlyAsnMetValGluLeuCysLeuThrThrPheSerAspIleValLysThr : 399 |||||||...::: ...:::! ||| !||||||.!!|||:!! !:!!||| rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThr 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 254442 vulgar: AmOr22 342 399 . KQ414889.1 254271 254442 + 135 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254442 135 + . gene_id 31 ; sequence AmOr22 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254442 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254442 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254442 135 + . alignment_id 31 ; Query AmOr22 ; Align 254272 343 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 340 -> 396 Target range: 234979 -> 235147 341 : AlaGluGlnCysLysLysIleGlyGluIleSerTyrMetValAspTrpTyrArgLeuG : 360 .!!:!!||||||! |||:!!||||||! ! !||||||..!!!:|||||||||||| ThrGlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuP 234980 : ACTCAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTAC : 235037 361 : luGlyAsnLysLysLeuCysPheValLeuIleIleAlaMetSerAsnSerSerIleLy : 379 !!!.! ||| !!!!.|||:!!||||||:!!! !|||!:!! ! !||||| roHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLy 235038 : CTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAA : 235094 380 : sLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThrPheSerAspIle : 396 |:!!|||||||||!!..!.:!!:!!:!!! !:!!.!!||||||.!!|||:!: sIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235095 : AATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: AmOr22 340 396 . KQ414889.1 234979 235147 + 133 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234980 235147 133 + . gene_id 32 ; sequence AmOr22 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234980 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234980 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234980 235147 133 + . alignment_id 32 ; Query AmOr22 ; Align 234980 341 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 342 -> 396 Target range: 264723 -> 264885 343 : GlnCysLysLysIleGlyGluIleSerTyrMetValAspTrpTyrArgLeuGluGlyA : 362 ||||||||||||:!!||||||:!: !|||||| !:!!|||||| !||| !! GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 363 : snLysLysLeuCysPheValLeuIleIleAlaMetSerAsnSerSerIleLysLeuTh : 381 !. ! ! ||| !.!.:!!||||||||| !! |||!:! ! !.!!|||!!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 382 : rAlaGlyAsnMetValGluLeuCysLeuThrThrPheSerAspIle : 396 |||||||!!.!!::!!.!.:!!! !:!! !||||||||||||:!! rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: AmOr22 342 396 . KQ414889.1 264723 264885 + 124 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264885 124 + . gene_id 33 ; sequence AmOr22 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264885 124 + . alignment_id 33 ; Query AmOr22 ; Align 264724 343 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 301 -> 347 Target range: 261718 -> 261856 302 : TyrTyrValIleThrGluTrpSerSerSerHisLeuThrSerAlaIleThrPhePheI : 321 :::::::::::: ||||||:!!..!..! !!:!! !!:! ! !|||!:!|||! PhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheM 261719 : ttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCA : 261776 322 : leLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuVa : 340 !::!!||||||:!!:!! !||||||:!!||||||.!!|||||||||||||||:!!:! etMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLe 261777 : TGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACT : 261833 341 : lAlaGluGlnCysLysLysIle : 347 !.!!|||||| :!! ! :!: uThrGluGlnValGlnHisLeu 261834 : AACGGAACAGGTACAACATTTG : 261856 vulgar: AmOr22 301 347 . KQ414889.1 261718 261856 + 120 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261719 261856 120 + . gene_id 34 ; sequence AmOr22 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 261719 261856 . + . KQ414889.1 exonerate:protein2genome:local exon 261719 261856 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 261719 261856 120 + . alignment_id 34 ; Query AmOr22 ; Align 261719 302 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 341 -> 396 Target range: 283273 -> 283438 342 : GluGlnCysLysLysIleGlyGluIleSerTyrMetValAspTrpTyrArgLeuGluG : 361 ..!||||||||||||:!!||||||:!: !||||||..!:!!! !!:! !||| ! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 362 : lyAsnLysLysLeuCysPheValLeuIleIleAlaMetSerAsnSerSerIleLysLe : 380 !!!. ! ! ||| !!!.:!!|||||||||:!!! |||!:! ||||||:: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 381 : uThrAlaGlyAsnMetValGluLeuCysLeuThrThrPheSerAspIle : 396 :||||||......:::::::::::!! ! ! !||||||..!|||:!! eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspVal 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTA : 283438 vulgar: AmOr22 341 396 . KQ414889.1 283273 283438 + 107 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283438 107 + . gene_id 35 ; sequence AmOr22 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283438 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283438 107 + . alignment_id 35 ; Query AmOr22 ; Align 283274 342 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 306 -> 343 Target range: 291368 -> 291479 307 : GluTrpSerSerSerHisLeuThrSerAlaIleThrPhePheIleLeuLeuIleSerL : 326 ||||||..!|||||| !!! !! !.!! !:!!|||!:! !!! !||||||! !|||! GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 327 : euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln : 343 !!||||||||||||.!.||||||||||||:!!|||||||||:!! !! !||| heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAG : 291479 vulgar: AmOr22 306 343 . KQ414889.1 291368 291479 + 106 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 291479 106 + . gene_id 36 ; sequence AmOr22 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 291479 106 + . alignment_id 36 ; Query AmOr22 ; Align 291369 307 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 963 Query range: 0 -> 383 Target range: 204200 -> 206401 1 : MetSerArgValGlyLysAlaGluAsnGlyMetArgHisThrValTrpPheAlaTyrP : 20 |||||| !!:!!!.!!:!||||||.!.! !:!!|||:!!.!!..! ! |||!.! ! | MetSerGlyIleAlaArgAlaGluGluAspLeuArgTyrAlaThrArgPheValLysP 204201 : ATGTCTGGAATCGCGAGGGCAGAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGC : 204258 21 : roLeuLeuArgIleLeuGlyAlaTrpProAsnArgValSerSerSerThrLeuSerLy : 39 ||:!!||| !!|||:!!||||||||||||! !! !|||!:!|||||| !!!!!!!!!: roIleLeuGlyIleValGlyAlaTrpProIleProValAsnSerSerProPheThrAr 204259 : CGATTTTAGGGATAGTCGGTGCGTGGCCGATTCCAGTGAACTCCTCTCCGTTCACGAG : 204315 40 : sIlePheAsnTrpTyrLeuIlePheThrCysTyrThrLeuGlnLeuIleValLeuVal : 58 !:!! ! ... ! ! ! ! ..! !||| ||| ...::::!!:!!||| gLeuValArgArgIleGluHisValValThrTyrPheLeuPhePheLeuMetIleVal 204316 : GCTAGTACGGCGAATAGAACACGTAGTCACCtatttcctcttctttctgaTGATCGTA : 204372 59 : ProGlyPheLeuHisValPheLeuLysGluLysAsnGlyArgLysLysMetLysMetM : 78 ||||||.!!|||:!!||||||||||||||||||||||||!:!! ::::!!|||!!:: ProGlyLeuLeuTyrValPheLeuLysGluLysAsnGlyLysIleArgLeuLysIleL 204373 : CCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTC : 204432 79 : etIleProGlnValAsnGlyTyrLeuGlnLeuCysLysTyrSerLeuValLeuArgTr : 97 !: ||| |||||| !! !:!!|||!!!! !|||||||||:!!:!!||| ! ! euGlyProIleValAsnCysSerIleGlnPhePheLysTyrSerValIleLeuTyrAr 204433 : TCGGGCCGATCGTGAACTGCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCG : 204489 98 : pThrAsnLysLeuArgValLeuLeuAsnGluMetLysGluAspTrpLeuAsnThrThr : 116 !! !:!!|||:!!!:! ! !|||||| !!:!:!...||||||:!!.!..!!||| gIleAspLysIleGlnLysSerLeuAsnThrIleArgArgAspTrpIleGluAlaThr 204490 : GATCGACAAAATTCAGAAGAGTTTGAACACCATCAGACGCGACTGGATAGAGGCTACG : 204546 117 : GluGluAspGlnLeuIlePheArgAlaLysAlaSerPheGlyHisArgValMetSerM : 136 !!:|||:!!!:!||||||||||||:!!||||||!.!.!!|||!..||||||:!! !! AspGluAsnArgLeuIlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuI 204547 : GATGAAAATCGGTTGATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGA : 204606 137 : etIleAlaIleValThrTyrSerAlaGlyLeuGlyTyrArgThrIleLeuProLeuSe : 155 !: !||| !..!! !|||.!!!.!|||||| !!|||||||||||||||||||||! leAlaAlaAlaThrMetTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLe 204607 : TTGCAGCCGCCACTATGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTT : 204663 156 : rLysGlyArgIleLeuLeuProAsnAsnThrThrLysArgLeuLeuProCysProGly : 174 !!:!|||! !|||:!! !|||:!!|||..!|||! !|||! !||||||||||||! ! uArgGlyThrIleValThrProAspAsnValThrIleArgProLeuProCysProVal 204664 : GAGAGGAACGATCGTAACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTT : 204720 175 : TyrPheValPhePheAsnGluGlnValSerProIleTyrGluIleIlePheIleIleG : 194 |||||||||||||||||||||||| !||||||! !|||||||||:!!||||||:!:| TyrPheValPhePheAsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuG 204721 : tactttgttttctttaacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGC : 204780 195 : lnValLeuGlyGlyLeuLeuThrTyrThrIleMetCysGlyThrIleGlyMetCysVa : 213 ||:!!:!!!.!|||!!!:!!||||||.!!:!!!!: !!|||||| !|||||||||!. lnIleMetAlaGlyPheValThrTyrAlaValIleSerGlyThrCysGlyMetCysAl 204781 : AAATTATGGCTGGTTTTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGC : 204837 214 : lMetPheCysLeuHisSerSerSerLeuLeuArgIleLeuLeuAsnLysIleTyrGln : 232 !:!!||| !||||||:!!!!!|||:!!||||||||||||:!!||||||!!: !! ! aLeuPheValLeuHisAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAla 204838 : GCTGTTCGTTCTCCACGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCA : 204894 233 : LeuThrLysGlnLeuAspValAsnGluValValValHisGluLysIleValAspIleV : 252 |||..! ! :!! !|||:!!!.!|||..!:!!||||||..!||||||!.!||||||| LeuValAspLysAlaAspMetThrGluThrLeuValHisArgLysIleAlaAspIleV 204895 : CTTGTGGATAAGGCGGACATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTG : 204954 253 : alLysTyrGlnThrLysValLys{Gl} >>>> Target Intron 1 >>>> {y : 260 ||:!!||||||||||||:!!|||{ !} 905 bp {! alGluTyrGlnThrLysIleLys{Ar}++ ++{g 204955 : TTGAATATCAGACGAAGATAAAG{AG}gt.........................ag{A : 205885 261 : }PheLeuLysAsnValGluGlnLeuThrThrTyrLeuPheLeuLeuGluIleMetVal : 279 }||||||||||||:!!||| !:!!||| !|||:!!! !||| !|||!!::!!! ! }PheLeuLysAsnIleGluThrIleThrGluTyrIleCysLeuThrGluMetValGly 205886 : }TTTTTAAAGAACATTGAAACAATTACAGAGTACATTTGTTTAACCGAAATGGTGGGC : 205940 280 : GluThrSerIleGlyCysValIleGlyTyrAsnValValThr >>>> Target In : 294 ! |||.!!:!!! !|||:!!:!: !||| !!:!!:!!! ! 66 b GlyThrGlyLeuValCysLeuValTyrTyrTyrIleLeuMet++ 205941 : GGTACGGGTCTAGTATGTCTCGTGTATTATTACATTCTCATGgt.............. : 205987 295 : tron 2 >>>> GluTrpGluAspSerAsnAlaAlaAlaMetIleIleHisLeuMet : 308 p |||||||||:!!!:!|||.!!.!!|||:!:|||:!::!!:!!! ! ++GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThr 205988 : ...........agGAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACG : 206093 309 : MetGlnValSerThrIleSerCysThrPheIleMetCysTyrValGlyGlnThrLeuI : 328 :!!|||:!!||| !! !! !|||..!||||||:!:||||||:!!|||||| !|||| LeuGlnIleSerCysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuI 206094 : TTGCAGATATCTTGTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTA : 206153 329 : leAspGlu >>>> Target Intron 3 >>>> GlyAsnAsnValArgArgMet : 337 |||||:!! 81 bp ..!:!! !||| !! !! leAspGln++ ++AsnHisValValGlyLeuThr 206154 : TCGATCAAgt.........................agAACCACGTCGTGGGATTGACA : 206261 338 : SerIleThrLeuAspTrpTyrArgPheProValLysGluAlaArgAsnLeuIleLeuV : 357 ||| !|||:!!:!!|||||||||.!!||| !!:!.!.||||||::!:!!||||||: SerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuI 206262 : TCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGA : 206321 358 : alIleIleMetSerSerTyrProValLysLeuThrAlaGlyLysValValAspIleSe : 376 !!||| !||||||!:!||||||:!!||||||||||||||||||:!! !!!!:!!:|| leIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSe 206322 : TAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTC : 206378 377 : rLeuAlaThrPheThrAspIle : 383 |||||||!:!|||||||||:!! rLeuAlaSerPheThrAspVal 206379 : TTTAGCTAGTTTCACCGATGTA : 206401 vulgar: AmOr14 0 383 . KQ414889.1 204200 206401 + 963 M 259 777 S 0 2 5 0 2 I 0 901 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204201 206401 963 + . gene_id 1 ; sequence AmOr14 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 204201 204979 . + . KQ414889.1 exonerate:protein2genome:local exon 204201 204979 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 204980 204981 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 204980 205884 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 205883 205884 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 205885 205984 . + . KQ414889.1 exonerate:protein2genome:local exon 205885 205984 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 205985 205986 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 205985 206050 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 206049 206050 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 204201 206401 963 + . alignment_id 1 ; Query AmOr14 ; Align 204201 1 777 ; Align 205886 261 99 ; Align 206051 294 111 ; Align 206243 331 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 344 Query range: 20 -> 383 Target range: 262873 -> 264885 21 : LeuLeuArgIleLeuGlyAlaTrpProAsnArgValSerSerSerThrLeuSerLysI : 40 ||||||!:! :!!|||||||||||| !!.!|||! !|||! !:!!..!::!| LeuLeuLysProIleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgI 262874 : CTGCTGAAACCGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAA : 262931 41 : lePheAsnTrpTyrLeuIlePheThrCysTyrThrLeuGlnLeuIleValLeuValPr : 59 ||.!! !:: !|||||| !!..!|||||| !||| !||| !..!:!!:!!|| leIleTrpPheLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIlePr 262932 : TTATCTGGTTTCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCC : 262988 60 : oGlyPheLeuHisValPheLeuLysGluLysAsnGlyArgLysLysMetLysMetMet : 78 |..!.!.||||||:!! !!|||:!!! :!!||| !!.!! !|||:!!:!!:!::!: oSerIleLeuHisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeu 262989 : TTCCATACTTCATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTC : 263045 79 : IleProGlnValAsnGlyTyrLeuGlnLeuCysLysTyrSerLeuValLeuArgTrpT : 98 !|||! ! !.!. !!!:!:!! :!! !!!.|||!!!! !:!!|||! ! ! GlyProLeuGlyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisS 263046 : GGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACA : 263105 99 : hrAsnLysLeuArgValLeuLeuAsnGluMetLysGluAspTrpLeuAsnThrThrGl : 117 :!!!. ! :!!!:!! !! !:!!.!..!.:!!:!!|||||||||! !! !..!|||.. erLysAspIleGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrAr 263106 : GTAAAGATATACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAG : 263162 118 : u<->GluAspGlnLeuIlePheArgAlaLysAlaSerPheGlyHisArgValMetSer : 135 ! |||||||||! !|||.!.! ! !!!.|||!.!!:!|||!.! !||| :!! gLeuGluAspGlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAla 263163 : GTTGGAGGATCAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCT : 263219 136 : MetIleAlaIleValThrTyrSerAlaGlyLeuGlyTyrArgThrIleLeuProLeuS : 155 !|||||| !!! ! ! !!!::! !:!! !! ! !! !:!! ! !!!!!! SerCysAlaIlePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheT 263220 : TCTTGCGCGATCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCA : 263279 156 : erLysGlyArgIleLeuLeuProAsnAsnThr<->ThrLysArgLeuLeuProCysPr : 173 !!! ! ! !||| ! ! !|||.!.||| ! ! !|||:!!||||||||||| hrThrGlnValIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysPr 263280 : CTACACAGGTGATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCC : 263336 174 : oGlyTyrPheValPhePheAsnGluGlnValSerProIleTyrGluIleIlePheIle : 192 |! !||| ! !.!!.!! ! .!...!!:!|||! !!||||||.!!.!! ! oValTyrLysGluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAla 263337 : AGTGTACAAAGAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCC : 263393 193 : IleGlnValLeuGlyGlyLeuLeuThrTyrThrIleMetCysGlyThrIleGlyMetC : 212 ! ||| !!|||..!|||!!!:!!..! !.!!! !! !|||.!!.!!|||||| ThrGlnPheLeuSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetT 263394 : ACGCAATTTCTGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGA : 263453 213 : ysValMetPheCysLeuHisSerSerSerLeuLeuArgIleLeuLeuAsnLysIleTy : 231 !.!:!!|||..! !|||:!!!!!.!!! !|||!.!:!:|||:!!::! !||| hrAlaValPheAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleTh 263454 : CAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCAC : 263510 232 : rGlnLeuThrLysGln<->LeuAspValAsnGluValValValHisGluLysIleVal : 249 :!!!!!..!!!.||| !|||! !|||:!! !:!! ! ! :!!|||! ! rGluPheValAsnGlnSerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGly 263511 : GGAATTCGTGAACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGC : 263567 250 : AspIleValLysTyrGlnThrLysValLys{Gl} >>>> Target Intron 1 > : 260 ! ||||||:!!:!!!!. !!:!||| !{.!} 839 bp ValIleValGluHisHisLeuArgValLeu{Se}++ 263568 : GTGATCGTTGAACATCATCTGAGAGTTCTG{AG}gt...................... : 263604 261 : >>> {y}PheLeuLysAsnValGluGlnLeuThrThrTyrLeuPheLeuLeuGluIl : 277 {!}!:!! !! !||| !!!::!: ...::: ...||| ! :! +-{r}TyrCysThrAsnCysAspLys---AspAsnPheCysLeuLeuGlnCysLe 263605 : ...at{C}TATTGCACAAATTGTGATAAa---gacaatttttgtttacttcAGTGTTT : 264487 278 : eMetValGluThrSerIleGlyCysValIleGlyTyrAsnValValThrGluTrpGlu : 296 : !!!:! !! !.!!! !!! !||| ! !:!!||| !! !||||||||| uSerArgAspIleIlePheVal***AsnIleThrIleAspValPheGlnGluTrpGlu 264488 : GTCCAGGGATATAATATTTGTATGAAATATAACAATTGACGTTTTTCAGGAATGGGAA : 264544 297 : AspSerAsnAlaAlaAlaMetIleIleHisLeuMetMetGlnValSerThrIleSerC : 316 ..! ::: ::: !! !:!!!!!|||!!:! !:!!|||! ! !.!! SerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerMetCysGlyA 264545 : AGTCAtgatattcaaaatttgacTACATATTTCATGATACTGATATCAATGTGCGGCA : 264604 317 : ysThrPheIleMetCysTyrValGlyGlnThrLeuIleAspGlu >>>> Target : 331 !! !|||:!!|||||||||:!!|||:!!! !|||! !!!:::: 78 snIlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGln++ 264605 : ACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcaggt............ : 264651 332 : Intron 2 >>>> GlyAsnAsnValArgArgMetSerIleThrLeuAspTrpTyrA : 345 bp !!!!.!!.||| !!..!:!! ! !! !! !:!!|||||| ++CysLysLysValGlyGluValValTyrMetSerAsnTrpTyrT 264652 : .............agTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATT : 264769 346 : rgPheProValLysGluAlaArgAsnLeuIleLeuValIleIleMetSerSerTyrPr : 364 !!!.||| !|||!!: !! !:!!|||||||||:!!|||:!!! |||||| yrLeuProTyrLysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValVa 264770 : ACTTACCCTACAAAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGT : 264826 365 : oValLysLeuThrAlaGlyLysValValAspIleSerLeuAlaThrPheThrAspIle : 383 ! !!|||!!!||||||||||||:!!:!! !!!!:|||:!! !||||||!:!|||:!! lPheLysPheThrAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264827 : GTTTAAATTCACCGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264883 vulgar: AmOr14 20 383 . KQ414889.1 262873 264885 + 344 M 97 291 G 0 3 M 48 144 G 0 3 M 71 213 G 0 3 M 23 69 S 0 2 5 0 2 I 0 835 3 0 2 S 1 1 M 7 21 G 1 0 M 62 186 5 0 2 I 0 74 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262874 264885 344 + . gene_id 2 ; sequence AmOr14 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262874 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262874 263601 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 264440 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264439 264440 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 264441 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264441 264648 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264726 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262874 264885 344 + . alignment_id 2 ; Query AmOr14 ; Align 262874 21 291 ; Align 263168 118 144 ; Align 263315 166 213 ; Align 263531 237 69 ; Align 264442 261 21 ; Align 264463 269 186 ; Align 264727 331 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 198 Query range: 7 -> 190 Target range: 294672 -> 295227 8 : GluAsnGlyMetArgHisThrValTrpPheAlaTyrProLeuLeuArgIleLeuGlyA : 27 ..!|||! !:!! !:!!!:!:!! !!:!..! !||||||!:! :!!||| ArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyL 294673 : AGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTC : 294730 28 : laTrpProAsnArgValSer<->SerSerThrLeuSerLysIlePheAsnTrpTyrLe : 45 !|||||| !! ! !||| !!!|||! !|||!:!|||:!!.!!::: !|| euTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLe 294731 : TTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCT : 294787 46 : uIlePheThrCysTyrThrLeuGlnLeuIleValLeuValProGlyPheLeuHisVal : 64 |||| !||| ! ! !|||.!!|||||||||||| !! ! ! ! ! uIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCys 294788 : GATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGT : 294844 65 : PheLeuLysGluLysAsnGlyArgLysLysMetLysMetMetIleProGlnValAsnG : 84 ! !!! ! ! |||||| ::: |||||||||:!::!! !||| !:!! !!. ValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrS 294845 : GTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACT : 294904 85 : lyTyrLeuGlnLeuCysLysTyrSerLeuValLeuArgTrpThrAsnLysLeuArgVa : 103 .! |||...:!! !!:!||||||! !:!!:!! ! ||| ! !!!!!:! erMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHi 294905 : CTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCA : 294961 104 : lLeuLeuAsnGluMetLysGluAspTrp<->LeuAsnThrThrGluGluAspGlnLeu : 121 !! !:!!.!.!!:!!::!!.!.|||||| |||! ! !!.! !||| !!!:! ! sCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAla 294962 : TTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCG : 295018 122 : IlePheArgAlaLysAlaSerPheGlyHisArgValMetSerMetIleAlaIleValT : 141 |||.!.! ! !!!.|||! ! !! !!!.|||:!!! ! .!!.!!|||:!!! IleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleI 295019 : ATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAA : 295078 142 : hrTyrSerAlaGlyLeuGlyTyrArgThrIleLeuProLeuSerLysGlyArgIleLe : 160 !||||||:!!!.!:!!..!|||!.!.!!|||:::|||... ...... :!: leTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGl 295079 : TCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGA : 295135 161 : uLeuProAsnAsnThrThrLysArgLeuLeuProCysProGlyTyrPheValPhePhe : 179 ! ! !!!.|||!.!|||! ||| !|||||| !||||||||| :!!||| ! uAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheVal 295136 : GAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTA : 295192 180 : AsnGluGlnValSerProIleTyrGluIleIle : 190 :!!! ! !||||||! !|||||||||||| AspAlaTyrSerSerProThrTyrGluIleIle 295193 : GACGCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: AmOr14 7 190 . KQ414889.1 294672 295227 + 198 M 26 78 G 0 3 M 79 237 G 0 3 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294673 295227 198 + . gene_id 3 ; sequence AmOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294673 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294673 295227 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294673 295227 198 + . alignment_id 3 ; Query AmOr14 ; Align 294673 8 78 ; Align 294754 34 237 ; Align 294994 113 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 195 Query range: 293 -> 383 Target range: 305100 -> 305783 294 : GluTrpGluAspSerAsnAlaAlaAlaMetIleIleHisLeuMetMetGlnValSerT : 313 !!:||||||..!||||||.!!!.!::!:!:! !! !:!! !:!!:!:! !:!!|||. AspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValLeuLeuIleSerV 305101 : GATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGTTACTGATATCTG : 305158 314 : hrIleSerCysThrPheIleMetCysTyrValGlyGlnThrLeuIleAspGlu >>> : 331 .!! !! ! !! !||||||:!:||||||:!!|||:!!! !|||!!:!!::!! alThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMetGluLys++ 305159 : TAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTATGGAAAAGgt... : 305214 332 : > Target Intron 1 >>>> GlyAsnAsnValArgArgMetSerIleThrLeuA : 342 413 bp .!!!:!!:!||| !! ! !!!.!!! !:!!. ++SerSerSerValGlyLeuSerCysPheMetIleS 305215 : ......................agAGCAGTAGCGTTGGATTATCCTGTTTTATGATCA : 305658 343 : spTrpTyrArgPheProValLysGluAlaArgAsnLeuIleLeuValIleIleMetSe : 361 .!||||||!.!!!.|||..!||| ! !!.!..!|||||||||:!!||| !||||| erTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleLeuIleIleAlaMetSe 305659 : GTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTTTAATCATTGCCATGTC : 305715 362 : rSerTyrProValLysLeuThrAlaGlyLysValValAspIleSerLeuAlaThrPhe : 380 |||| !!|||!.!|||:!!!:!||||||||||||||||||:!!||||||:!!|||||| rSerAsnProAlaLysIleSerAlaGlyLysValValAspLeuSerLeuSerThrPhe 305716 : AAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTATCTTTATCCACATTT : 305772 381 : ThrAspIle : 383 !:!!:!: GlyAsnVal 305773 : GGAAACGTG : 305783 vulgar: AmOr14 293 383 . KQ414889.1 305100 305783 + 195 M 37 111 5 0 2 I 0 409 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305101 305783 195 + . gene_id 4 ; sequence AmOr14 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305101 305783 195 + . alignment_id 4 ; Query AmOr14 ; Align 305101 294 111 ; Align 305625 331 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 185 Query range: 289 -> 393 Target range: 280079 -> 280465 290 : AsnValValThrGluTrpGluAspSerAsnAlaAlaAlaMetIleIleHisLeuMetM : 309 :::||| !! !|||||||||.!.!:!:!!||| !!.!! !.!!! :!!||||||. SerValPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetP 280080 : TCAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGT : 280137 310 : etGlnValSerThrIleSerCysThrPheIleMetCysTyrValGlyGlnThrLeuIl : 328 !.! :!!||| !! ! ! !..!||||||:!:||||||:!!|||:!!! !||| heLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSe 280138 : TTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTC : 280194 329 : eAspGlu >>>> Target Intron 1 >>>> GlyAsnAsnValArgArgMetS : 338 !!!:::: 74 bp !! !!.||| !! ! ! rGluGln++ ++CysLeuLysValGlyValSerT 280195 : CGAACaggt.........................agTGCTTAAAAGTCGGCGTGTCAA : 280298 339 : erIleThrLeuAspTrpTyrArgPheProValLysGluAlaArgAsnLeuIleLeuVa : 357 !! !! !:!!||||||||||||!!.|||! !|||:!!|||!:!..!|||||||||:! hrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIl 280299 : CTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGAT : 280355 358 : lIleIleMetSerSerTyrProValLysLeuThrAlaGlyLysValValAspIleSer : 376 !.!! !:!!|||!:!! ! !!:!!||||||||||||||||||:!!:!!|||:!!||| ePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSer 280356 : ATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCT : 280412 377 : LeuAlaThrPheThrAspIleIleLysThrThrValGlyTyrLeuAsnMet : 393 |||::!!:!||| !..!:!:! !! ! !!.!:!!..!|||! !:!!:!! LeuSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280413 : TTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: AmOr14 289 393 . KQ414889.1 280079 280465 + 185 M 41 123 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280080 280465 185 + . gene_id 5 ; sequence AmOr14 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280080 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280080 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280080 280465 185 + . alignment_id 5 ; Query AmOr14 ; Align 280080 290 123 ; Align 280277 331 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 11 -> 225 Target range: 194168 -> 194807 12 : ArgHisThrValTrpPheAlaTyrProLeuLeuArgIleLeuGlyAlaTrpProAsnA : 31 ..!:!!.!!||| ! ! ||| ! !!||||||! ! :!!||| !||||||!... GluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProArgG 194169 : GAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAAGGG : 194226 32 : rgValSerSerSerThrLeuSerLysIlePheAsnTrpTyrLeuIlePheThrCysTy : 50 .!! !||| ! !! ! ! !::!:!:||| ! ! !:!: !!: luAspSerLeuArgAspArgValArgLeuPheAlaGlnThrGlyVal------ValPh 194227 : AGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTG------GTCTT : 194277 51 : rThrLeuGlnLeuIleValLeuValProGlyPheLeuHisValPheLeuLysGluLys : 69 !.!!|||..!! !.!!:!!||||||||| ! ! :!!:!!..!!:!!!! ! :!! eAlaLeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCysGlu 194278 : CGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAG : 194334 70 : AsnGlyArgLysLysMetLysMetMetIleProGlnValAsnGlyTyrLeuGlnLeuC : 89 :!! !! !!:! ! ||||||:!:!!: !!|||||| !.!! ||| !:!! AspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleI 194335 : GATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCA : 194394 90 : ysLysTyrSerLeuValLeuArgTrpThrAsnLysLeuArgValLeuLeuAsnGluMe : 108 !|||!:!!!! !:!!:!! ! ! !!!.:!!:!!||| !!! !||| ||||| leLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGluMe 194395 : TCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGAT : 194451 109 : tLysGluAspTrpLeuAsnThr<->ThrGluGluAspGlnLeuIlePheArgAlaLys : 126 |:!! !.!.!:: !:!!..! !|||||||||!:!! !:!:.!.! ! ! tGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsnCys 194452 : GGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGC : 194508 127 : AlaSerPheGlyHisArgValMetSerMetIleAlaIleValThrTyrSerAlaGlyL : 146 |||!.!.!!|||!.. ! !!! !!!:!! ! ! !:!!:!!|||.!!!.!!.!| AlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaL 194509 : GCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTT : 194568 147 : euGlyTyrArgThrIleLeuProLeuSerLysGlyArgIleLeuLeuProAsnAsnTh : 165 || !|||!.!! !||||||||||||! !..!! !||||||:!! ! !:!!|||!: euProTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGluAspAsnSe 194569 : TGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAACAG : 194625 166 : rThrLysArgLeuLeuProCysProGlyTyrPheValPhePheAsnGluGlnValSer : 184 !|||:!!! !! !||||||! ! !.!! !!!:!||||||||| :!!! !||| rThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAspSer 194626 : TACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGACTCG : 194682 185 : ProIleTyrGluIleIlePheIleIleGlnValLeuGlyGlyLeuLeuThrTyrThrI : 204 |||||||||||||||! !|||:!! |||:!!||| !.!! !:!!! !! :!!! ProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuSerT 194683 : CCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGTCGA : 194742 205 : leMetCysGlyThrIleGlyMetCysValMetPheCysLeuHisSerSerSerLeuLe : 223 ! ||||||! ! !.!!:!! !!.!! .!! !:!!|||!!!!!!.!!|||!! hrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGlyLeuPh 194743 : CGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTTGTT : 194799 224 : uArgIle : 225 !..!:!: eGluVal 194800 : CGAAGTG : 194807 vulgar: AmOr14 11 225 . KQ414889.1 194168 194807 + 183 M 35 105 G 2 0 M 67 201 G 0 3 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194169 194807 183 + . gene_id 6 ; sequence AmOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194169 194807 . + . KQ414889.1 exonerate:protein2genome:local exon 194169 194807 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 194169 194807 183 + . alignment_id 6 ; Query AmOr14 ; Align 194169 12 105 ; Align 194274 49 201 ; Align 194478 116 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 289 -> 393 Target range: 286866 -> 287252 290 : AsnValValThrGluTrpGluAspSerAsnAlaAlaAlaMetIleIleHisLeuMetM : 309 :::||| !! !|||||||||.!.|||.!..!! !!.!! !|||! :!!! !! !: SerValPhe***GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrL 286867 : TCAGTTTTCTAGGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGT : 286924 310 : etGlnValSerThrIleSerCysThrPheIleMetCysTyrValGlyGlnThrLeuIl : 328 !!! !|||||| !! ! ! !..!||||||:!:||||||:!!|||:!!! !||| euLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSe 286925 : TGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTC : 286981 329 : eAspGlu >>>> Target Intron 1 >>>> GlyAsnAsnValArgArgMetS : 338 !!!:::: 74 bp !! !!.||| !! ! ! rGluGln++ ++CysLeuLysValGlyLeuSerT 286982 : CGAACaggt.........................agtGCTTAAAAGTCGGCTTGTCAA : 287085 339 : erIleThrLeuAspTrpTyrArgPheProValLysGluAlaArgAsnLeuIleLeuVa : 357 !! !! !:!!||||||||||||!!.|||! !||| !|||!:!..!|||||||||:! hrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIl 287086 : CTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGAT : 287142 358 : lIleIleMetSerSerTyrProValLysLeuThrAlaGlyLysValValAspIleSer : 376 !.!! !:!!|||!:!! ! !!:!!||||||||||||||||||:!!:!!|||:!!||| ePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSer 287143 : ATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCT : 287199 377 : LeuAlaThrPheThrAspIleIleLysThrThrValGlyTyrLeuAsnMet : 393 |||::!!:!||| !..!:!:! !! ! !!.!:!!..!|||! !:!!:!! LeuSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 287200 : TTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 287252 vulgar: AmOr14 289 393 . KQ414889.1 286866 287252 + 174 M 41 123 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286867 287252 174 + . gene_id 7 ; sequence AmOr14 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286867 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286867 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286867 287252 174 + . alignment_id 7 ; Query AmOr14 ; Align 286867 290 123 ; Align 287064 331 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 293 -> 388 Target range: 238411 -> 238802 294 : GluTrpGluAspSerAsnAlaAlaAlaMetIleIleHisLeuMetMetGlnValSerT : 313 ||||||! !!!:|||:!!||| ! !:!:|||! :!!!!!:!: ! |||:!!! GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheValAlaLeuValAlaI 238412 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTGTAGCACTCGTTGCTA : 238469 314 : hrIleSerCysThrPheIleMetCysTyrValGlyGlnThrLeuIleAspGlu >>> : 331 !:!!||| !|||||||||:!:||||||:!!.!!:!!! !|||! !!!::!! leValSerAsnThrPheIleLeuCysTyrIleSerGluArgLeuThrGluGln++ 238470 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGAAAGGCTGACAGAACAGgt... : 238525 332 : > Target Intron 1 >>>> GlyAsnAsnValArgArgMetSerIleThrLeuA : 342 106 bp !! !!.||| !!..!:!! ! !! ! !| ++CysLeuLysValGlyGluValValTyrMetThrA 238526 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 238662 343 : spTrpTyrArgPheProValLysGluAlaArgAsnLeuIleLeuValIleIleMetSe : 361 |||||||| !.!.||| !!:!..! !! !:!!|||||||||:!!|||! ! || spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSe 238663 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATC : 238719 362 : rSerTyrProValLysLeuThrAlaGlyLysValValAspIleSerLeuAlaThrPhe : 380 |!:! !||||||:!!|||||||||||||||:!! !!!!:|||||| !|||||| rAsnValValValLysValThrAlaGlyLysValLeuHisMetSerLeuTyrThrPhe 238720 : GAACGTGGTCGTTAAAGTCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTC : 238776 381 : ThrAspIleIleLysThrThrVal : 388 !|||:!!! !:!!|||!.!:!! GlyAspValSerGluThrAsnLeu 238777 : GGCGATGTAAGTGAAACTAATCTT : 238802 vulgar: AmOr14 293 388 . KQ414889.1 238411 238802 + 154 M 37 111 5 0 2 I 0 102 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238412 238802 154 + . gene_id 8 ; sequence AmOr14 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 238412 238522 . + . KQ414889.1 exonerate:protein2genome:local exon 238412 238522 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238523 238524 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238523 238628 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 238627 238628 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238629 238802 . + . KQ414889.1 exonerate:protein2genome:local exon 238629 238802 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238412 238802 154 + . alignment_id 8 ; Query AmOr14 ; Align 238412 294 111 ; Align 238629 331 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 117 -> 242 Target range: 304446 -> 304821 118 : GluAspGlnLeuIlePheArgAlaLysAlaSerPheGlyHisArgValMetSerMetI : 137 ..!|||!:: !!!:.!.! ! ! ! !.!..!.!.|||!..!.!:!!! !! !!!: ArgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIleC 304447 : AGAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAATCT : 304504 138 : leAlaIleValThrTyrSerAlaGlyLeuGlyTyrArgThrIleLeuProLeuSerLy : 156 !|||||| !!! !|||!!!!.!||| ! !|||!.!|||:!!:!!! !!!!:!!! ysAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheAlaTh 304505 : GCGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCGAC : 304561 157 : sGlyArgIleLeuLeuProAsnAsnThrThrLysArgLeuLeuProCysProGlyTyr : 175 |||! ! !:!! ! ! !!||| !|||! !:!! !||| !! !||| !||| rGlyThrTyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProThrTyr 304562 : CGGAACGTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACCTAC : 304618 176 : PheValPhePheAsnGluGlnValSerProIleTyrGluIleIlePheIleIleGlnV : 195 !!.!!!.|||:!!! |||..!|||||||||||||||:!::!!!:!.!!:!!!!. SerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheValHisC 304619 : AGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCATT : 304678 196 : alLeuGlyGlyLeuLeuThrTyrThrIleMetCysGlyThrIleGlyMetCysValMe : 214 !:!! !!|||! !:!!! !|||:!!|||! ..!|||.!! !|||:!:..!!.!:! ysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLe 304679 : GCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCT : 304735 215 : tPheCysLeuHisSerSerSerLeuLeuArgIleLeuLeuAsnLysIleTyrGlnLeu : 233 :|||..! !|||:!!!!!.!!! !:!! !|||:!!:!!::!::!:!: !.!.||| uPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAspLeu 304736 : TTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGATCTT : 304792 234 : ThrLysGlnLeuAspValAsnGluVal : 242 ..!!!.... !!!: !::!!!::!! ValAsnSerLysGluSerSerAspLeu 304793 : GTCAACAGCAAAGAATCATCTGATTTA : 304821 vulgar: AmOr14 117 242 . KQ414889.1 304446 304821 + 152 M 125 375 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304447 304821 152 + . gene_id 9 ; sequence AmOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304447 304821 . + . KQ414889.1 exonerate:protein2genome:local exon 304447 304821 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304447 304821 152 + . alignment_id 9 ; Query AmOr14 ; Align 304447 118 375 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 295 -> 383 Target range: 234809 -> 235147 296 : GluAspSerAsnAlaAlaAlaMetIleIleHisLeuMetMetGlnValSerThrIleS : 315 :!!!!:!..::: ::: ! !:!!:!!!!::!! ! ||||||! !! !! GlnGluLysSerLysGluLysLeuAlaSerTyrValIleValTyrValSerMetThrP 234810 : CAGGAAAAgtcgaaggaaaaattagCTTCATACGTCATCGTGTACGTGTCCATGACAT : 234867 316 : erCysThrPheIleMetCysTyrValGlyGlnThrLeuIleAspGlu >>>> Targ : 331 ||||||...||||||:!!|||:!!||||||! !!!::!! heAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGln++ 234868 : TtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGCAGgt......... : 234917 332 : et Intron 1 >>>> GlyAsnAsnValArgArgMetSerIleThrLeuAspTrpT : 344 74 bp !!!.!!!.||| !!..!! ! !! ! !!!:|||| ++CysThrLysValGlyGluLysValTyrMetThrGluTrpT 234918 : ................agTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGT : 235028 345 : yrArgPheProValLysGluAlaArgAsnLeuIleLeuValIleIleMetSerSerTy : 363 |||||!!.||| !||| |||! !..!|||:!!:!!:!!||| !! !|||||| yrArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMe 235029 : ACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCAT : 235085 364 : rProValLysLeuThrAlaGlyLysValValAspIleSerLeuAlaThrPheThrAsp : 382 !:!!|||:!!|||||||||||| !!:!!.!.!!:|||:!!||||||||| !||| tValIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAsp 235086 : GGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGAT : 235142 383 : Ile : 383 :!: Val 235143 : GTG : 235147 vulgar: AmOr14 295 383 . KQ414889.1 234809 235147 + 139 M 35 105 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234810 235147 139 + . gene_id 10 ; sequence AmOr14 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234810 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234810 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234810 235147 139 + . alignment_id 10 ; Query AmOr14 ; Align 234810 296 105 ; Align 234989 331 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 331 -> 383 Target range: 301880 -> 302036 332 : AsnAsnValArgArgMetSerIleThrLeuAspTrpTyrArgPheProValLysGluA : 351 !:!.!.:!! !! ! ||| ! !:!!|||||||||!.!!!.|||!.!|||..!| SerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgA 301881 : AGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAG : 301938 352 : laArgAsnLeuIleLeuValIleIleMetSerSerTyrProValLysLeuThrAlaGl : 370 || !:!!|||||||||:!!! !:!:!!:|||..!|||||| !|||||||||||||| laTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGl 301939 : CATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGG : 301995 371 : yLysValValAspIleSerLeuAlaThrPheThrAspIle : 383 ||||:!!:!!|||:!!|||||| !||||||!:!..!:!! yLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301996 : GAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: AmOr14 331 383 . KQ414889.1 301880 302036 + 138 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301881 302036 138 + . gene_id 11 ; sequence AmOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301881 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301881 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301881 302036 138 + . alignment_id 11 ; Query AmOr14 ; Align 301881 332 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 326 -> 380 Target range: 292380 -> 292542 327 : LeuIleAspGluGlyAsnAsnValArgArgMetSerIleThrLeuAspTrpTyrArgP : 346 :!!:!: !!:!!|||!:!.!.:!! !!.! ||| ! ! !!!:||||||!.!. ValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnL 292381 : GTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATC : 292438 347 : heProValLysGluAlaArgAsnLeuIleLeuValIleIleMetSerSerTyrProVa : 365 !.||| !::!:!!||||||:!!:!!:!!||||||:!! !!!:!!!!.!:!!|||:! euProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIl 292439 : TGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGAT : 292495 366 : lLysLeuThrAlaGlyLysValValAspIleSerLeuAlaThrPhe : 380 !||||||||||||||||||:!! !!! !:!!|||||| !|||||| eLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPhe 292496 : CAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTT : 292542 vulgar: AmOr14 326 380 . KQ414889.1 292380 292542 + 123 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292381 292542 123 + . gene_id 12 ; sequence AmOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292381 292542 . + . KQ414889.1 exonerate:protein2genome:local exon 292381 292542 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292381 292542 123 + . alignment_id 12 ; Query AmOr14 ; Align 292381 327 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 331 -> 383 Target range: 219515 -> 219671 332 : AsnAsnValArgArgMetSerIleThrLeuAspTrpTyrArgPheProValLysGluA : 351 ......::: ...|||||| !! !:!!!!:|||||||||!!. !!! !|||:!! ArgLysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysL 219516 : aggaaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAA : 219573 352 : laArgAsnLeuIleLeuValIleIleMetSerSerTyrProValLysLeuThrAlaGl : 370 !! ! !:!!|||..!||| !||||||!:!! ! !!:!!|||||||||||||| ysLeuTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGl 219574 : AGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGG : 219630 371 : yLysValValAspIleSerLeuAlaThrPheThrAspIle : 383 |!!.:!!|||!!::!:|||:!!::!||||||||||||:!: yAsnMetValGluLeuSerIleSerThrPheThrAspVal 219631 : AAATATGGTCGAATTGTCTATCAGCACTTTTACCGACGTG : 219671 vulgar: AmOr14 331 383 . KQ414889.1 219515 219671 + 113 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219516 219671 113 + . gene_id 13 ; sequence AmOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219516 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219516 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219516 219671 113 + . alignment_id 13 ; Query AmOr14 ; Align 219516 332 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 326 -> 383 Target range: 214851 -> 215022 327 : LeuIleAspGluGlyAsnAsnValArgArgMetSerIleThrLeuAspTrpTyrArgP : 346 :!!:!!.!.:!! !!!!.!!.||| !!..!:!:||| !! !:!!!!:|||||||||! MetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrArgL 214852 : ATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACCGAT : 214909 347 : heProValLysGluAlaArgAsnLeuIleLeuValIleIleMetSerSerTyrProVa : 365 !.|||! !!!.:!! !! ! !! !||||||:!!!!: !||||||!:!! !!|| euProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSerVa 214910 : TGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATCCGT : 214966 366 : lLysLeuThrAlaGlyLysValValAspIleSerLeuAlaThrPheThrAspIle : 383 ||||!!!|||||||||!!.:!!|||!!::!:|||:!!::!||||||!:!..!:!! lLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214967 : CAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215022 vulgar: AmOr14 326 383 . KQ414889.1 214851 215022 + 106 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214852 215022 106 + . gene_id 14 ; sequence AmOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214852 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214852 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214852 215022 106 + . alignment_id 14 ; Query AmOr14 ; Align 214852 327 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 341 -> 383 Target range: 277587 -> 277713 342 : AspTrpTyrArgPheProValLysGluAlaArgAsnLeuIleLeuValIleIleMetS : 361 :!!|||||| !!!.|||! !|||!!: !! !||||||:!!|||:!!||| !! | AsnTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgS 277588 : AATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGAT : 277645 362 : erSerTyrProValLysLeuThrAlaGlyLysValValAspIleSerLeuAlaThrPh : 380 ||||| :::|||:::||||||||||||::::::...:::|||:!! !||||| erSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPh 277646 : CTAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTT : 277702 381 : eThrAspIle : 383 | !|||:!! eGlyAspVal 277703 : CGGCGATGTA : 277713 vulgar: AmOr14 341 383 . KQ414889.1 277587 277713 + 106 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277588 277713 106 + . gene_id 15 ; sequence AmOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277588 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277588 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277588 277713 106 + . alignment_id 15 ; Query AmOr14 ; Align 277588 342 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 331 -> 383 Target range: 224502 -> 224658 332 : AsnAsnValArgArgMetSerIleThrLeuAspTrpTyrArgPheProValLysGluA : 351 ......::: ::!:!!||| !! !:!!||||||||||||!!. !!! !!!.:!! GluLysIleGlyGlnValSerTyrMetIleAspTrpTyrArgLeuThrGlyAsnLysL 224503 : gaaaaaattggacaAGTGTCGTACATGATCGACTGGTATCGGTTGACTGGAAATAAGA : 224560 352 : laArgAsnLeuIleLeuValIleIleMetSerSerTyrProValLysLeuThrAlaGl : 370 !! ! !! !||||||:!!||| ||||||!:!! ! !!:!!|||||||||||||| ysLeuCysCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAlaGl 224561 : AACTATGCTGCATTCTGATAATCGCGATGTCCAATTCTTCGATAAAATTGACAGCGGG : 224617 371 : yLysValValAspIleSerLeuAlaThrPheThrAspIle : 383 |!!.:!!|||!!::!:!!!|||.!!|||||| !|||:!! yAsnMetValGluLeuCysLeuThrThrPheGlyAspVal 224618 : AAACATGGTCGAACTGTGTCTAACCACTTTCGGTGACGTA : 224658 vulgar: AmOr14 331 383 . KQ414889.1 224502 224658 + 104 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224503 224658 104 + . gene_id 16 ; sequence AmOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224503 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224503 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224503 224658 104 + . alignment_id 16 ; Query AmOr14 ; Align 224503 332 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 341 -> 386 Target range: 244691 -> 244826 342 : AspTrpTyrArgPheProValLysGluAlaArgAsnLeuIleLeuValIleIleMetS : 361 ||||||||| !.!.||| !!:!..! !! !:!!|||||||||:!!|||! ! | AspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgS 244692 : GATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGAT : 244749 362 : erSerTyrProValLysLeuThrAlaGlyLysValValAspIleSerLeuAlaThrPh : 380 ||!:! !|||:!!:!!|||||||||||||||:!! !!!!:|||||| !||||| erAsnMetValValGluIleThrAlaGlyLysValLeuHisMetSerLeuTyrThrPh 244750 : CGAACATGGTCGTTGAAATCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTT : 244806 381 : eThrAspIleIleLysThr : 386 | !|||:!!! !:!!||| eGlyAspValSerGluThr 244807 : CGGCGATGTAAGTGAAACT : 244826 vulgar: AmOr14 341 386 . KQ414889.1 244691 244826 + 104 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244692 244826 104 + . gene_id 17 ; sequence AmOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244692 244826 . + . KQ414889.1 exonerate:protein2genome:local exon 244692 244826 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244692 244826 104 + . alignment_id 17 ; Query AmOr14 ; Align 244692 342 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 341 -> 388 Target range: 254307 -> 254448 342 : AspTrpTyrArgPheProValLysGluAlaArgAsnLeuIleLeuValIleIleMetS : 361 ||||||||| !.!.||| !!:!..! !! !:!!|||||||||:!!|||! ! | AspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgS 254308 : GATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGAT : 254365 362 : erSerTyrProValLysLeuThrAlaGlyLysValValAspIleSerLeuAlaThrPh : 380 ||!:! !|||:!!:!!||||||||||||::: :::|||||| !||||| erAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPh 254366 : CGAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTT : 254422 381 : eThrAspIleIleLysThrThrVal : 388 | !|||:!!! !:!!|||!.!:!! eGlyAspValSerGluThrAsnLeu 254423 : CGGCGATGTAAGTGAAACTAATCTT : 254448 vulgar: AmOr14 341 388 . KQ414889.1 254307 254448 + 104 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254308 254448 104 + . gene_id 18 ; sequence AmOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254308 254448 . + . KQ414889.1 exonerate:protein2genome:local exon 254308 254448 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254308 254448 104 + . alignment_id 18 ; Query AmOr14 ; Align 254308 342 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1304 Query range: 0 -> 405 Target range: 256601 -> 258738 1 : MetSerAsnArgSerValAlaIleLysThrAspProAspThrAsnSerAspTyrCysL : 20 |||!!!|||..!! !!.!!.!:!!||||||:!! ! ! !:! !!||||||||| !!| MetThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerL 256602 : ATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTC : 256659 21 : euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerPheProSerTh : 39 |||||||||||||||||||||||||||||||||||||||||||| !!! !!||||| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 256660 : TCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCAC : 256716 40 : rThrLysHisGluArgIleIleSerPheLeuLeuAsnValSerCysTyrSerSerLeu : 58 ||||! ! !||||||! !:!!|||.!!:!!||||||:!! !||||||.!!|||:!! rThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIle 256717 : TACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATA : 256773 59 : LeuPheThrLeuIleProCysLeuLeuHisMetLeuLeuGluAspGluSerPheTyrL : 78 ||||||||||||||||||||||||||||||:!:!!!|||!!:|||!!:|||||||||: LeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrM 256774 : TTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAca : 256833 79 : euLysMetLysValLeuGlySerLeuAlaHisTrpPheValGlyThrMetAsnTyrTh : 97 ::|||:::||| ...||| !!:!!::!||||||.!!:!!.!! ! |||||||| etLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrTh 256834 : tgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACAC : 256890 98 : rThrLeuLeuLeuArgGlyLysGluIleArgLeuCysValGluHisIleArgThrAsp : 116 | !|||||||||!:!||||||!!:||||||! !|||||||||||||||..!|||||| rLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAsp 256891 : GTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGAT : 256947 117 : TrpGlnThrValThrArgGluGluAspGlnGlnValMetLeuLysAsnAlaLysPheG : 136 |||::!! !|||! !||||||:!!|||||||||||||||:!!|||||||||!:!|||| TrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheG 256948 : TGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCG : 257007 137 : lyArgTyrValAlaAlaValSerAlaAlaIleLeuGlnSerGlyValAsnCysUnkCy : 155 ||||||||||||||.!! !!!!!|||||||||:!!|||||||||||| ||| lyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePh 257008 : GTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttctt : 257064 156 : sCysMetThrIleSerArgThrGluLeuIleGlnIleGlyAsnGluThrArgIleVal : 174 !:!! !!.!||||||:!!|||!!.:!:||||||||||||! !|||||| eValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleVal 257065 : cgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTG : 257121 175 : HisValLeuProCysAlaValTyrArgLysLeuIleAspValThrHisSerProAsnS : 194 !..||||||||| !.!!||||||!:!||||||:!::!!||| !!!.||||||!..! ArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrA 257122 : CGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGA : 257181 195 : erGluLeuIleIleAlaSerGlnPheLeuSerGlyPheIleValAsnSerSerThrAl : 213 :!|||:!!:!::!! !! !||| !! !|||..!.!!|||!.!!.!!!!||||||!. snGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrVa 257182 : ACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGT : 257238 214 : aGlyIlePheSerLeuAlaAlaIleLeuGlyAlaHisAlaCysGlyGlnLeuSerVal : 232 !.!!||||||||||||||||||:!!!!!!.!.!!||||||! !|||||||||!!!||| lSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrVal 257239 : TAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTG : 257295 233 : ValMetThrTrpIleThrGluPheValAsnLysSerLysLysArgGluLysMetIle< : 252 :!!|||:!!|||||||||||||||||||||:!!|||!:!!!.||||||||| ... LeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheP 257296 : CTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttc : 257355 253 : ->PheArgGluIleGlyLeuIleValGluHisHisLeuArgThrLeu{As} >>>> : 267 |||!:!:!!||||||:!!|||||||||||||||||||||..!|||{!:} roPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Se}++ 257356 : ctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt..... : 257407 268 : Target Intron 1 >>>> {n}PheIleSerCysIleGluGluThrIleAsnArg : 278 76 bp {!}|||||||||! !|||||||||..!!!:|||||| ++{r}PheIleSerTyrIleGluGluValMetAsnArg 257408 : ....................ag{T}TTCATATCATATATCGAGGAAGTGATGAACCGA : 257512 279 : IleIlePheLeuGluValPheArgCysCysLeuHisIleCysCysLeuGlyTyrTyrI : 298 ||| !|||||||||:!!||||||||| ||| !|||||| ||||||||||||| IleCysPheLeuGluLeuPheArgCysThrLeuAlaIleCysMetLeuGlyTyrTyrI 257513 : ATATGTTTTTTAGAGTTGTTTAGATGCACGCTGGCTATATGCATGCTGGGATACTACA : 257572 299 : leLeuMet >>>> Target Intron 2 >>>> GluTrpSerAspTyrAspLys : 307 ||||| ! 684 bp ||||||||| ||| leLeuAla++ ++GluTrpSerThrGlnAspIle 257573 : TTCTTGCGgt.........................aggaATGGTCTACGCaagatatt : 258283 308 : ArgSerMetIleIleTyrPheMetLeuPheValSerValCysPheAsnIlePheIleI : 327 ::::::::: |||||||||:!!.!!:!!|||::: ||||||||||||:::| GlnAsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValI 258284 : caaaatttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaa : 258343 328 : leCysTyrIleGlyGluIleLeuAlaGluGlu >>>> Target Intron 3 >>> : 338 |||||||||||||||||||||||.!!|||:!! 90 bp leCysTyrIleGlyGluIleLeuThrGluGln++ 258344 : tatgttACATAGGTGAAATATTAACAGAACAGgt........................ : 258378 339 : > SerMetLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProAspL : 356 !!!! !|||||||||!!:||||||||||||||||||||||||||||||||||||| ++CysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspL 258379 : .agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACA : 258520 357 : ysThrIleLeuAspLeuThrLeuIleIleAlaArgSerSerValValValGlnIleTh : 375 ||! !||||||||||||! !|||:!!|||||||||||||||||||||||||||||||| ysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleTh 258521 : AAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCAC : 258577 376 : rAlaGlyLysLeuIleHisMetSerIleGlnThrPheThrAsp >>>> Target I : 390 ||||||||||......|||||||||||| ! ||||||!:!||| 69 rAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAsp++ 258578 : CGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATgt............. : 258624 391 : ntron 4 >>>> ValIleLysThrGlyPheAlaTyrLeuAsnLeuLeuArgGlnVa : 404 bp ||||||||||||..!||||||||||||||||||||||||||||| ++ValIleLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnVa 258625 : ............agGTAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGT : 258733 405 : lThr : 405 |:!! lSer 258734 : ATCG : 258738 vulgar: AmOr28PSE 0 405 . KQ414889.1 256601 258738 + 1304 M 251 753 G 0 3 M 15 45 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256602 258738 1304 + . gene_id 1 ; sequence AmOr28PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256602 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256602 257404 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256602 258738 1304 + . alignment_id 1 ; Query AmOr28PSE ; Align 256602 1 753 ; Align 257358 252 45 ; Align 257482 268 99 ; Align 258265 301 111 ; Align 258466 338 156 ; Align 258691 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1290 Query range: 0 -> 405 Target range: 259721 -> 262201 1 : MetSerAsnArgSerValAlaIleLysThrAspProAspThrAsnSerAspTyrCysL : 20 |||!!!|||!:!|||||| !:!!:!!|||..! ! !!:!:!!||||||||| !!| MetThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerL 259722 : ATGACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCC : 259779 21 : euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerPheProSerTh : 39 |||||!!!|||||||||||||||||||||||||||||||||||| !!! !!||||| euGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 259780 : TCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCAC : 259836 40 : rThrLysHisGluArgIleIleSerPheLeuLeuAsnValSerCysTyrSerSerLeu : 58 ||||!:!! !|||!:!||||||||| !!:!!|||! ! !!! !|||||||||!!!:!! rThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIle 259837 : GACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATA : 259893 59 : LeuPheThrLeuIleProCysLeuLeuHisMetLeuLeuGluAspGluSerPheTyrL : 78 ||| !!|||||||||||||||:!!|||||||||||||||||| ! ||||||!!.|||: LeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrM 259894 : CTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACA : 259953 79 : euLysMetLysValLeuGlySerLeuAlaHisTrpPheValGlyThrMetAsnTyrTh : 97 !!|||! !|||||||||||| !!|||.!!||||||||||||||| !!!:|||||||| etLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrTh 259954 : TGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACAC : 260010 98 : rThrLeuLeuLeuArgGlyLysGluIleArgLeuCysValGluHisIleArgThrAsp : 116 |||||||||||||||||||!:!!!:|||! ! !||||||||||||:!:..!!.!||| rThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAsp 260011 : AACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGAT : 260067 117 : TrpGlnThrValThrArgGluGluAspGlnGlnValMetLeuLysAsnAlaLysPheG : 136 |||::!! !:!!|||||||||:!!||||||.!.|||||||||!:! !!|||||||||| TrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheG 260068 : TGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCG : 260127 137 : lyArgTyrValAlaAlaValSerAlaAlaIleLeuGlnSerGlyValAsnCysUnkCy : 155 ||||||||||||||||| !!!!||||||.!!:!!|||.!!|||||| ||| || lyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCy 260128 : GCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTG : 260184 156 : sCysMetThrIleSerArgThrGluLeuIleGlnIleGlyAsnGluThrArgIleVal : 174 |! :!:|||:!:! !!!!||||||:!!||||||:!:||||||||||||||||||||| sLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal 260185 : TTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTT : 260241 175 : HisValLeuProCysAlaValTyrArgLysLeuIleAspValThrHisSerProAsnS : 194 |||:!!||||||||||||||||||!:!:!!||||||:!!|||!.! !!||||||! ! HisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetA 260242 : CATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGA : 260301 195 : erGluLeuIleIleAlaSerGlnPheLeuSerGlyPheIleValAsnSerSerThrAl : 213 :!|||:!!:!!:!!!.! !||||||:!!|||||||||||||||||||||||||||!. snGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrVa 260302 : ACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGT : 260358 214 : aGlyIlePheSerLeuAlaAlaIleLeuGlyAlaHisAlaCysGlyGlnLeuSerVal : 232 !|||||||||||||||||||||:!!||| !|||||||||||||||||||||!:!||| lGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnVal 260359 : TGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTG : 260415 233 : ValMetThrTrpIleThrGluPheValAsnLysSerLysLysArgGluLysMetIle< : 252 :!!||| !||||||||||||||||||:!!:!!|||!:!!!.|||:!!|||! ! ! LeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaP 260416 : CTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTC : 260475 253 : ->PheArgGluIleGlyLeuIleValGluHisHisLeuArgThrLeu{As} >>>> : 267 |||!:!|||||||||:!!|||||||||||||||||||||.!!|||{!.} roPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeu{Th}++ 260476 : CTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC{AC}gt..... : 260527 268 : Target Intron 1 >>>> {n}PheIleSerCysIleGluGluThrIleAsnArg : 278 257 bp {!}||||||||| !!||||||!!:..!!!:|||||| ++{r}PheIleSerArgIleGluAspValMetAsnArg 260528 : ....................ag{C}TTCATATCGCGTATCGAGGATGTGATGAACCGG : 260813 279 : IleIlePheLeuGluValPheArgCysCysLeuHisIleCysCysLeuGlyTyrTyrI : 298 ||| !|||||||||:!!||||||||| !||| !!|||||| ||||||||||||| IleCysPheLeuGluLeuPheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrI 260814 : ATATGCTTCCTGGAGTTGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATA : 260873 299 : leLeuMet >>>> Target Intron 2 >>>> GluTrpSerAspTyrAspLys : 307 |||||||| 852 bp ||||||:!!!!: ! |||! ! leLeuMet++ ++GluTrpAlaGluGlnAspIle 260874 : TTCTTATGgt.........................agGAATGGGCTGAGCAAGATATA : 261752 308 : ArgSerMetIleIleTyrPheMetLeuPheValSerValCysPheAsnIlePheIleI : 327 !:!!:!:!! !! |||||||||:!!.!.:!!:!!:!!|||||||||:!!||||||| GlnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheIleI 261753 : CAAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAA : 261812 328 : leCysTyrIleGlyGluIleLeuAlaGluGlu >>>> Target Intron 3 >>> : 338 |||||||||||||||||||||||.!!|||:!! 81 bp leCysTyrIleGlyGluIleLeuThrGluGln++ 261813 : TCTGTTACATCGGTGAAATACTAACGGAACAGgt........................ : 261847 339 : > SerMetLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProAspL : 356 !!! !|||||||||!!:|||||||||||||||:!!||||||||||||||||||| ++CysSerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuProAspL 261848 : .agTGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACCTGATA : 261980 357 : ysThrIleLeuAspLeuThrLeuIleIleAlaArgSerSerValValValGlnIleTh : 375 ||!:!||||||||||||! !|||||||||||||||!.! !! !! ! ! !!.!!! ysSerIleLeuAspLeuIleLeuIleIleAlaArgLysProProGlyAsn***PheLy 261981 : AAAGTATCCTTGATTTGATTTTGATCATTGCACGAAAACCGCCGGGAAATTAGTTCAA : 262037 376 : rAlaGlyLysLeuIleHisMetSer{Il} >>>> Target Intron 4 >>>> : 384 !..! ::!!!!! !!.! !:!!{||} 75 bp sCys---ArgPheThrArgSerAla{Il}++ ++ 262038 : ATGT---CGGTTTACACGTTCGGCG{AT}gt.........................ag : 262136 385 : {e}GlnThrPheThrAspValIleLysThrGlyPheAlaTyrLeuAsnLeuLeuArgG : 403 {|}! ! !.!. !.!.|||:!!||||||!.!||||||||||||||||||||||||| {e}ProLeuIlePheGlnValValLysThrAlaPheAlaTyrLeuAsnLeuLeuArgG 262137 : {T}CCGTTGATATTCCAGGTGGTTAAAACTGCTTTCGCGTATCTGAATCTGTTGCGTC : 262193 404 : lnValThr : 405 ||:!!||| lnMetThr 262194 : AAATGACG : 262201 vulgar: AmOr28PSE 0 405 . KQ414889.1 259721 262201 + 1290 M 251 753 G 0 3 M 15 45 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 39 117 G 1 0 M 6 18 S 0 2 5 0 2 I 0 71 3 0 2 S 1 1 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259722 262201 1290 + . gene_id 2 ; sequence AmOr28PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259722 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259722 260524 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262062 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262062 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 262063 262064 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 262063 262137 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 262136 262137 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 262138 262201 . + . KQ414889.1 exonerate:protein2genome:local exon 262138 262201 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259722 262201 1290 + . alignment_id 2 ; Query AmOr28PSE ; Align 259722 1 753 ; Align 260478 252 45 ; Align 260783 268 99 ; Align 261734 301 111 ; Align 261926 338 117 ; Align 262043 378 18 ; Align 262139 385 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 994 Query range: 1 -> 405 Target range: 236804 -> 238921 2 : SerAsnArgSerValAlaIleLysThrAspProAspThrAsnSerAspTyrCysLeuG : 21 !:!:!!!:!!!!|||!.!! !:!!! !:!! ! !.!!!:!||||||||| !!|||| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuG 236805 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCC : 236862 22 : lnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerPheProSerThrTh : 40 ||! !||||||||| :!!||| !||||||.!!||||||..!||| !!|||!.! lnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerAsnLe 236863 : AGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGAACCT : 236919 41 : rLysHisGluArgIleIleSerPheLeuLeuAsnValSerCysTyrSerSerLeuLeu : 59 ! ||||||! !|||||| :!!|||||||||! !||||||!!!:!!:!!||| u------GluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeu 236920 : C------GAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTA : 236970 60 : PheThrLeuIleProCysLeuLeuHisMetLeuLeuGluAspGluSerPheTyrLeuL : 79 |||:!!:!!|||||||||! !||||||:!::!!|||||| ! ! !!!!|||||| !| PheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrL 236971 : TTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGA : 237030 80 : ysMetLysValLeuGlySerLeuAlaHisTrpPheValGlyThrMetAsnTyrThrTh : 98 ||:!!|||:!!||||||||||||::!|||||| ! !! !!! !!!:!:!||||||! ysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMe 237031 : AAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCAT : 237087 99 : rLeuLeuLeuArgGlyLysGluIleArgLeuCysValGluHisIleArgThrAspTrp : 117 !|||||||||||| !!||| ||||||! !! ! !!.!.|||!!:..!||||||||| tLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrp 237088 : GCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGG : 237144 118 : GlnThrValThrArgGluGluAspGlnGlnValMetLeuLysAsnAlaLysPheGlyA : 137 ::!|||..!||||||:::||| ::::::|||||||||||| !!|||||||||.!!| ArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerA 237145 : AGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTC : 237204 138 : rgTyrValAlaAlaValSerAlaAlaIleLeuGlnSerGlyValAsnCysUnkCysCy : 156 |||||!.!||| ! !!!!.!! !.!!:!!!!..!!|||:!! ! ! ||| rgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysVa 237205 : GATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGT : 237261 157 : sMetThrIleSerArgThrGluLeuIleGlnIleGlyAsnGluThrArgIleValHis : 175 !|||||| |||! !||| !:!!:!! !:!!||||||:!!|||! !|||:!!!.! lMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLeuArg 237262 : TATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGC : 237318 176 : ValLeuProCysAlaValTyrArgLysLeuIleAspValThrHisSerProAsnSerG : 195 |||||||||! !!:!!|||!:! !|||:!! ||| ! !:! !!! !:!! ValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnA 237319 : GTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACG : 237378 196 : luLeuIleIleAlaSerGlnPheLeuSerGlyPheIleValAsnSerSerThrAlaGl : 214 !::!!:!!:!! !||||||||||||||||||||||||!.!|||!:!|||.!! !.! spIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSe 237379 : ACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAG : 237435 215 : yIlePheSerLeuAlaAlaIleLeuGlyAlaHisAlaCysGlyGlnLeuSerValVal : 233 !:!!.!.||||||.!!::! !||| !:!!||||||! !|||||||||||||||||| rValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValVal 237436 : TGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTT : 237492 234 : MetThrTrpIleThrGluPheValAsnLysSerLysLysArgGluLys<->MetIleP : 252 ||| !! !||| !!!:||||||!:!:!!:!!!:!:::|||! !||| !| MetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAspHisP 237493 : ATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATCATT : 237552 253 : heArgGluIleGlyLeuIleValGluHisHisLeuArgThrLeu{As} >>>> Tar : 267 || !|||||| ! !|||||||||.!.|||||||||..!|||{||} heAspGluIleProThrIleValGluGluHisLeuArgValLeu{As}++ 237553 : TCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTG{AA}gt........ : 237601 268 : get Intron 1 >>>> {n}PheIleSerCysIleGluGluThrIleAsnArgIle : 279 68 bp {|}||||||||| !!||||||! !! !!!:|||!:! ++{n}PheIleSerArgIleGluAlaMetMetAsnLysAla 237602 : .................ag{C}TTCATATCGCGCATAGAGGCAATGATGAACAAAGCG : 237701 280 : IlePheLeuGluValPheArgCysCysLeuHisIleCysCysLeuGlyTyrTyrIleL : 299 !|||||||||:!!.!.|||||| :!! !:!!|||...|||||||||||||||! CysPheLeuGluLeuMetArgCysMetIleAlaValCysAlaLeuGlyTyrTyrIleP 237702 : TGTTTCCTGGAGTTAATGAGGTGCATGATAGCTGTATGCGCACTTGGATATTATATAT : 237761 300 : euMet >>>> Target Intron 2 >>>> GluTrpSerAspTyrAspLysArg : 308 !!||| 645 bp ||||||:!!!!: !||| !:! heMet++ ++GluTrpAlaGluSerAspAlaLys 237762 : TCATGgt.........................agGAATGGGCAGAGAGCGATGCTAAA : 238433 309 : SerMetIleIleTyrPheMetLeuPheValSerValCysPheAsnIlePheIleIleC : 328 ! !:!:|||! ||||||:!: !.!!|||:!!:!! !! !|||! !||||||:!!| IleLeuIleThrTyrPheValAlaLeuValAlaIleValSerAsnThrPheIleLeuC 238434 : ATCTTAATCACGTACTTTGTAGCACTCGTTGCTATTGTTTCTAATACATTTATACTCT : 238493 329 : ysTyrIleGlyGluIleLeuAlaGluGlu >>>> Target Intron 3 >>>> : 338 ||||||||.!!|||! |||.!!|||:!! 106 bp ysTyrIleSerGluArgLeuThrGluGln++ ++ 238494 : GTTATATCAGCGAAAGGCTGACAGAACAGgt.........................ag : 238627 339 : SerMetLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProAspLysT : 357 !!!:!!|||||||||||||||||||||||||||||||||||||||||||||.!.!:!! CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgA 238628 : TGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAA : 238686 358 : hrIleLeuAspLeuThrLeuIleIleAlaArgSerSerValValValGlnIleThrAl : 376 !||||||||||||! !||||||||| !||||||!:!|||||||||:!!:!!||||| rgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValThrAl 238687 : GAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCACCGC : 238743 377 : aGlyLysLeuIleHisMetSerIleGlnThrPheThrAsp >>>> Target Intr : 390 |||||||:!!:!!|||||||||:!! ! |||||| !||| 89 bp aGlyLysValLeuHisMetSerLeuTyrThrPheGlyAsp++ 238744 : TGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATgt................ : 238787 391 : on 4 >>>> ValIleLysThrGlyPheAlaTyrLeuAsnLeuLeuArgGlnValTh : 405 |||:!!||||||||||||||||||:!!|||:!!||| !!|||:!!:! ++ValValLysThrGlyPheAlaTyrMetAsnMetLeuCysGlnMetSe 238788 : .........agGTAGTAAAAACAGGATTCGCCTACATGAATATGCTTTGTCAAATGTC : 238919 406 : r : 405 ! r 238920 : C : 238921 vulgar: AmOr28PSE 1 405 . KQ414889.1 236804 238921 + 994 M 39 117 G 2 0 M 207 621 G 0 3 M 17 51 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 33 99 5 0 2 I 0 641 3 0 2 M 37 111 5 0 2 I 0 102 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236805 238921 994 + . gene_id 3 ; sequence AmOr28PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 236805 237598 . + . KQ414889.1 exonerate:protein2genome:local exon 236805 237598 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 237599 237600 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 237599 237666 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 237665 237666 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 237667 237766 . + . KQ414889.1 exonerate:protein2genome:local exon 237667 237766 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 237767 237768 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 237767 238411 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 238410 238411 . + . intron_id 1 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 238412 238522 . + . KQ414889.1 exonerate:protein2genome:local exon 238412 238522 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238523 238524 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238523 238628 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 238627 238628 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238629 238784 . + . KQ414889.1 exonerate:protein2genome:local exon 238629 238784 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238785 238786 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238785 238873 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 238872 238873 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238874 238921 . + . KQ414889.1 exonerate:protein2genome:local exon 238874 238921 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 236805 238921 994 + . alignment_id 3 ; Query AmOr28PSE ; Align 236805 2 117 ; Align 236922 43 621 ; Align 237546 250 51 ; Align 237668 268 99 ; Align 238412 301 111 ; Align 238629 338 156 ; Align 238874 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 939 Query range: 1 -> 299 Target range: 274335 -> 275306 2 : SerAsnArgSerValAlaIleLysThrAspProAspThrAsnSerAspTyrCysLeuG : 21 !:!||| !!:!!:!! !:!!! .!!:!! !|||!:! !||||||||| !!|||| AsnAsnCysAlaIleAsnValThrAlaAsnPheAspSerLeuSerAspTyrSerLeuG 274336 : AACAACTGTGCGATAAACGTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGC : 274393 22 : lnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerPheProSerThrTh : 40 |||||||||||||||||||||||||||||||||||||||||! ! ! !! !!||||| lnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaSerProThrTh 274394 : AATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCAC : 274450 41 : rLysHisGluArgIleIleSerPheLeuLeuAsnValSerCysTyrSerSerLeuLeu : 59 |||| !|||||||||:!!||| !|||||| ||||||!!!! !:!!||| rLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeu 274451 : GAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTGCTTCATACTC : 274507 60 : PheThrLeuIleProCysLeuLeuHisMetLeuLeuGluAspGluSerPheTyrLeuL : 79 ! !|||:!!|||||| !!:!!!!!|||!!::!!|||! !|||||||||.!!:!!|||| SerThrValIleProSerIlePheHisIleIleLeuValAspGluSerLeuHisLeuL 274508 : TCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGA : 274567 80 : ysMetLysValLeuGlySerLeuAlaHisTrpPheValGlyThrMetAsnTyrThrTh : 98 ||:!!|||:!!|||||| !!|||!.!|||||||||:!!||| !!!:||||||||||| ysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrTh 274568 : AGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCAC : 274624 99 : rLeuLeuLeuArgGlyLysGluIleArgLeuCysValGluHisIleArgThrAspTrp : 117 |||||||||||||.!!|||||||||||| !||||||||||||!!:!:!||||||||| rLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrp 274625 : GCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGG : 274681 118 : GlnThrValThrArgGluGluAspGlnGlnValMetLeuLysAsnAlaLysPheGlyA : 137 ::!! !||||||||| !|||||||||||||||||||||||||||||||||.!!|||| ArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyA 274682 : AGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTC : 274741 138 : rgTyrValAlaAlaValSerAlaAlaIleLeuGlnSerGlyValAsnCysUnkCysCy : 156 ||||||||||| ! !!!!!||||||.!!:!!|||!!!|||||| !||| ||| rgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysVa 274742 : GTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGT : 274798 157 : sMetThrIleSerArgThrGluLeuIleGlnIleGlyAsnGluThrArgIleValHis : 175 !!:||| ! !! !! !:!! !:!!|||:!!|||||||||||||||! !|||||| lIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrArgThrValHis 274799 : GATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCAT : 274855 176 : ValLeuProCysAlaValTyrArgLysLeuIleAspValThrHisSerProAsnSerG : 195 :!!||||||||| !!.!|||!:!|||:!!:!!! ||| ! ||||||!..!:!| MetLeuProCysLysAlaTyrLysLysIleValAlaValAspThrSerProThrAsnG 274856 : ATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACG : 274915 196 : luLeuIleIleAlaSerGlnPheLeuSerGlyPheIleValAsnSerSerThrAlaGl : 214 ||:!!:!!:!!||||||||||||:!!||||||||||||||||||||||||.!!!.!|| luIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerSerAlaValGl 274916 : AGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGG : 274972 215 : yIlePheSerLeuAlaAlaIleLeuGlyAlaHisAlaCysGlyGlnLeuSerValVal : 233 | !|||||||||||||||:!:!!!!.!|||||||||! !|||||||||||||||:!! yAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeu 274973 : CGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTG : 275029 234 : MetThrTrpIleThrGluPheValAsnLysSerLysLysArgGluLysMetIle<->P : 252 |||! !||||||||||||||||||||| ! |||!:! ! :::...||| ::: | MetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsnLysAsnValTyrP 275030 : ATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatt : 275089 253 : heArgGluIleGlyLeuIleValGluHisHisLeuArgThrLeu{As} >>>> Tar : 267 || !|||||||||:!!:!!||||||||||||||||||..!|||{!:} heSerGluIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 275090 : tcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTC{AG}gt........ : 275138 268 : get Intron 1 >>>> {n}PheIleSerCysIleGluGluThrIleAsnArgIle : 279 74 bp {!}||||||:!! !!||||||!!:..!!!:||||||||| ++{r}PheIleAlaArgIleGluAspValMetAsnArgIle 275139 : .................ag{T}TTCATAGCACGTATCGAGGATGTGATGAATCGAATA : 275244 280 : IlePheLeuGluValPheArgCysCysLeuHisIleCysCysLeuGlyTyrTyrIleL : 299 !|||:!!|||:!!|||!:!||| !||| !!!!:||| |||||||||||||||| CysPheMetGluLeuPheLysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleL 275245 : TGCTTCATGGAATTGTTCAAGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTC : 275304 300 : eu : 299 || eu 275305 : TC : 275306 vulgar: AmOr28PSE 1 299 . KQ414889.1 274335 275306 + 939 M 250 750 G 0 3 M 15 45 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274336 275306 939 + . gene_id 4 ; sequence AmOr28PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274336 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274336 275135 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274336 275306 939 + . alignment_id 4 ; Query AmOr28PSE ; Align 274336 2 750 ; Align 275089 252 45 ; Align 275211 268 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 868 Query range: 0 -> 273 Target range: 266586 -> 267408 1 : MetSerAsnArgSerValAlaIleLysThrAspProAspThrAsnSerAspTyrCysL : 20 |||:!!|||..!|||:!!!.!|||:!!.!!:!!! !:!!!:! ||||||||| !!| MetAlaAsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerL 266587 : ATGGCTAACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCC : 266644 21 : euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerPheProSerTh : 39 |||||||||||||||||||||||||||||||||||||||||||| !!!!. !! !|| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuTh 266645 : TGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCAC : 266701 40 : rThrLysHisGluArgIleIleSerPheLeuLeuAsnValSerCysTyrSerSerLeu : 58 |:!!|||! !|||||||||:!!|||!:! !|||! !|||! !||||||!!!|||:!! rSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIle 266702 : ATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATA : 266758 59 : LeuPheThrLeuIleProCysLeuLeuHisMetLeuLeuGluAspGluSerPheTyrL : 78 |||||||||:!!||||||||||||!!!|||:!::!!|||||||||||||||.!! ! LeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgT 266759 : CTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTA : 266818 79 : euLysMetLysValLeuGlySerLeuAlaHisTrpPheValGlyThrMetAsnTyrTh : 97 !|||:!!||||||!!!||| !!|||::!||||||||||||||| !!!:|||||||| hrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrTh 266819 : CGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACAC : 266875 98 : rThrLeuLeuLeuArgGlyLysGluIleArgLeuCysValGluHisIleArgThrAsp : 116 ||||||||||||||||.!!|||||||||||| !||||||||||||!!:!:!|||||| rThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAsp 266876 : CACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGAT : 266932 117 : TrpGlnThrValThrArgGluGluAspGlnGlnValMetLeuLysAsnAlaLysPheG : 136 |||::!! !||||||||| !||||||:!!|||||||||||||||||||||!:!.!!| TrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleG 266933 : TGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCG : 266992 137 : lyArgTyrValAlaAlaValSerAlaAlaIleLeuGlnSerGlyValAsnCysUnkCy : 155 ||||||||:!!||| ! !!!!!||||||.!!:!!|||!!!|||||| ! !! || lyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCy 266993 : GTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTG : 267049 156 : sCysMetThrIleSerArgThrGluLeuIleGlnIleGlyAsnGluThrArgIleVal : 174 | !!:||| ! !! !! !:!! !:!::!!:!!||||||||||||||||||||| sValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleVal 267050 : TGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTA : 267106 175 : HisValLeuProCysAlaValTyrArgLysLeuIleAspValThrHisSerProAsnS : 194 |||:!!||||||||||||||||||!:!|||:!!|||! ||| ! !||||||!..! HisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrA 267107 : CATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGA : 267166 195 : erGluLeuIleIleAlaSerGlnPheLeuSerGlyPheIleValAsnSerSerThrAl : 213 :!|||:!!:!!:!!!.!|||||||||:!!||||||||||||||||||||||||..!!. snGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValVa 267167 : ACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGT : 267223 214 : aGlyIlePheSerLeuAlaAlaIleLeuGlyAlaHisAlaCysGlyGlnLeuSerVal : 232 !||| !|||||||||||||||:!:!!!!.!||||||||||||||||||||||||||| lGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerVal 267224 : CGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTG : 267280 233 : ValMetThrTrpIleThrGluPheValAsnLysSerLysLysArgGluLysMetIle< : 252 :!!|||! !||||||! !||||||||||||::!|||!:! ! !!!.!.|||! :!! LeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValC 267281 : CTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTT : 267340 253 : ->PheArgGluIleGlyLeuIleValGluHisHisLeuArgThrLeuAsnPheIleSe : 270 ||| !:!!||||||:!!:!!||||||||||||||||||..!|||!..! !! ysPheAspLysIleGlyValValValGluHisHisLeuArgValLeuArg***GlyLe 267341 : GCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGAGGTAAGGATT : 267397 271 : rCysIleGlu : 273 !|||:!!:!! uCysLeuLys 267398 : GTGTCTCAAG : 267408 vulgar: AmOr28PSE 0 273 . KQ414889.1 266586 267408 + 868 M 251 753 G 0 3 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266587 267408 868 + . gene_id 5 ; sequence AmOr28PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266587 267408 . + . KQ414889.1 exonerate:protein2genome:local exon 266587 267408 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266587 267408 868 + . alignment_id 5 ; Query AmOr28PSE ; Align 266587 1 753 ; Align 267343 252 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 774 Query range: 16 -> 390 Target range: 232456 -> 235147 17 : AspTyrCysLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerP : 36 !!:||| !!:!!|||:!!|||||||||||||||! !|||!!:|||||||||||| !! GluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgV 232457 : GAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTG : 232514 37 : heProSerThrThrLysHisGluArgIleIleSerPheLeuLeuAsnValSerCysTy : 55 !! !!..!|||:!!!:! !:!!!:!:!!:!!:!! ||||||!..:!!!!!|||:! alThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHi 232515 : TTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCA : 232571 56 : rSerSerLeuLeuPheThrLeuIleProCysLeuLeuHisMetLeuLeuGluAspGlu : 74 !||| !:!!:!!! !:!!:!!:!!||||||:!!||| !!!:|||!!!|||||| ! sSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThr 232572 : TTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACG : 232628 75 : SerPheTyrLeuLysMetLysValLeuGlySerLeuAlaHisTrpPheValGlyThrM : 94 |||.!. ! !!:!|||||| !:!!||| !!:!!::!|||!::.!.:!!||| !: SerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluL 232629 : AGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAAT : 232688 95 : etAsnTyrThrThrLeuLeuLeuArgGlyLysGluIleArgLeuCysValGluHisIl : 113 !!|||||| ! !|||||| !!:!!.!!!.!!:|||! !! !|||||||||!!.:! euAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnVa 232689 : TGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGT : 232745 114 : eArgThrAspTrpGlnThrValThrArgGluGluAspGlnGlnValMetLeuLysAsn : 132 :!:! !||||||!:!!.!|||! !!:! ! !!!::.!.:!!|||||||||||| lLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsn 232746 : GAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAAC : 232802 133 : AlaLysPheGlyArgTyrValAlaAlaValSerAlaAlaIleLeuGlnSerGlyValA : 152 ||||||.!!||||||! :!!|||..!:!!:!!||| ! !:!!!!.!!!||||||. AlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValG 232803 : GCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCG : 232862 153 : snCysUnkCysCysMetThrIleSerArgThrGluLeuIleGlnIleGlyAsnGluTh : 171 .!! ! :!:||| ! !|||! !... !.!! ! :!:|||||||||!: lySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSe 232863 : GCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAG : 232919 172 : rArgIleValHisValLeuProCysAlaValTyrArgLysLeuIleAspValThrHis : 190 ! ! :!!:!! !|||||||||.!! !!|||! !||||||!!:|||..!! ! ! rTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPhe 232920 : TTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTC : 232976 191 : SerProAsnSerGluLeuIleIleAlaSerGlnPheLeuSerGlyPheIleValAsnS : 210 ||||||!..!:!|||:!!!!:.!!!.! !|||! !|||||||||||||||||||||| SerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnS 232977 : AGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACT : 233036 211 : erSerThrAlaGlyIlePheSerLeuAlaAlaIleLeuGlyAlaHisAlaCysGlyGl : 229 || !|||!.!||| !! !.!!|||!.!|||:!!|||!.! !|||||||||||||| erValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGl 233037 : CCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACA : 233093 230 : nLeuSerValValMetThrTrpIleThrGluPheValAsnLysSerLysLysArgGlu : 248 ||||!:!|||||||||:!! :!: !!!:!!.|||:!! !!.! !:!!..!||| nLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGlyGlnGluGlu 233094 : GCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAGGAGGAG : 233150 249 : LysMetIlePheArgGluIleGlyLeuIleValGluHisHisLeuArgThrLeuAsnP : 268 !:!:!: |||:!!:!!|||!!!|||||||||||||||||||||||||||!..! ArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeuArgT 233151 : AGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTAAGGT : 233210 269 : heIleSerCysIleGluGluThrIleAsn--ArgIleIlePheLeuGluValPheArg : 286 :!:!:||| :!:... !:!.!!|||## !|||:!:! ! !! ! ! ! !:! yrLeuSer---ValArgCysSerPheAsn##AlaIleLeuCysArgAlaGluValLys 233211 : ATTTGTCT---GTGCGTTGTAGTTTCAATGTGCAATACTGTGCAGAGCTGAAGTGAAG : 233263 287 : CysCysLeuHisIleCysCysLeuGlyTyrTyrIleLeuMetGluTrpSerAsp{Ty} : 305 !!||| ! ! :!:...||| !||| !!||||||||| ! ||| !!:!!{ } SerCysGluLysLeuAlaCysGlyGlyAsnTyrIleLeuGlyTyrTrpProAsn{Ar} 233264 : AGTTGTGAGAAGTTGGCGTGTGGAGGGAATTATATTCTTGGTTATTGGCCAAAC{CG} : 233320 306 : >>>> Target Intron 1 >>>> {r}AspLysArgSerMetIleIleTyrPh : 314 1496 bp { }...|||......::: ! !||| ! ++ +-{g}SerLysGluLysLeuAlaSerTyrVa 233321 : gt.........................aa{g}tcgaaggaaaaattagCTTCATACGT : 234843 315 : eMetLeuPheValSerValCysPheAsnIlePheIleIleCysTyrIleGlyGluIle : 333 !!!::!!!:!||||||:!! |||||||||||||||...|||||||||||||||! lIleValTyrValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluThr 234844 : CATCGTGTACGTGTCCATGACATTtaatatattcatattttgttACATCGGAGAGACG : 234900 334 : LeuAlaGluGlu >>>> Target Intron 2 >>>> SerMetLysValGlyGl : 343 |||.!!|||:!! 74 bp !!!! ||||||||||| LeuThrGluGln++ ++CysThrLysValGlyGl 234901 : CTTACAGAGCAGgt.........................agTGTACCAAAGTCGGAGA : 235004 344 : uValValTyrMetThrAspTrpTyrTyrLeuProAspLysThrIleLeuAspLeuThr : 362 | !||||||||||||!!:|||||| |||||| !!|||||| !|||! !|||..! uLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuVal 235005 : AAAAGTGTACATGACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTA : 235061 363 : LeuIleIleAlaArgSerSerValValValGlnIleThrAlaGlyLysLeuIleHisM : 382 :!!||||||:!!|||||||||:!!|||:!!:!!|||||||||||||||!!!:!!!!.| MetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheLeuGlnM 235062 : ATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAA : 235121 383 : etSerIleGlnThrPheThrAspVal : 390 |||||:!! !|||||| !|||||| etSerValAlaThrPheGlyAspVal 235122 : TGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: AmOr28PSE 16 390 . KQ414889.1 232456 235147 + 774 M 254 762 G 1 0 M 6 18 F 0 2 M 27 81 S 0 2 5 0 2 I 0 1492 3 0 2 S 1 1 M 32 96 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232457 235147 774 + . gene_id 6 ; sequence AmOr28PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232457 233321 . + . KQ414889.1 exonerate:protein2genome:local exon 232457 233321 . + . insertions 0 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local splice5 233322 233323 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233322 234817 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234816 234817 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 234818 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234818 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232457 235147 774 + . alignment_id 6 ; Query AmOr28PSE ; Align 232457 17 762 ; Align 233219 272 18 ; Align 233239 278 81 ; Align 234819 306 96 ; Align 234989 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 761 Query range: 15 -> 266 Target range: 262843 -> 263599 16 : SerAspTyrCysLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProS : 35 ||||||||| !!||||||:!!|||||||||.!.|||||||||||||||||||||||| SerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProL 262844 : AGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCAC : 262901 36 : erPheProSerThrThrLysHisGluArgIleIleSerPheLeuLeuAsnValSerCy : 54 !! ! !!|||! !:!!!:! ||||||||||||!!!|||||||||! !||| !|| euSerAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCy 262902 : TGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTG : 262958 55 : sTyrSerSerLeuLeuPheThrLeuIleProCysLeuLeuHisMetLeuLeuGluAsp : 73 ||||!!! !:!!|||! !|||:!!||||||! !:!!||||||!!::!!||||||! ! sTyrCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAla 262959 : TTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCC : 263015 74 : GluSerPheTyrLeuLysMetLysValLeuGlySerLeuAlaHisTrpPheValGlyT : 93 |||!:!|||:!!:!!|||:!!:!!||||||||| !!|||!.!!!.||||||||||||! GluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyM 263016 : GAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTA : 263075 94 : hrMetAsnTyrThrThrLeuLeuLeuArgGlyLysGluIleArgLeuCysValGluHi : 112 !!!:||||||||| !|||||||||!.!.!!|||!!:|||!:! !||||||:!!|| etIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHi 263076 : TGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACA : 263132 113 : sIleArgThrAspTrpGlnThrValThrArgGluGluAspGlnGlnValMetLeuLys : 131 |:!:!:! !|||||| ! !||||||||| !|||||||||!:::!!||||||||| sValGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLys 263133 : CGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAG : 263189 132 : AsnAlaLysPheGlyArgTyrValAlaAlaValSerAlaAlaIleLeuGlnSerGlyV : 151 |||||||||!:!|||||||||||||||||| !!!!||| !.!!:!!|||!!!.!!: AsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerI 263190 : AACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCA : 263249 152 : alAsnCysUnkCysCysMetThrIleSerArgThrGluLeuIleGlnIleGlyAsnGl : 170 !!! ||| ||| :!:||| ! !! !|||:!!:!!|||:!! !|||||||| leMetCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGl 263250 : TCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGA : 263306 171 : uThrArgIleValHisValLeuProCysAlaValTyrArgLysLeuIleAspValThr : 189 ||||||||||:!!!.!:!!||||||||| !!||||||!:!:!!:!!||| ||| ! uThrArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAsp 263307 : GACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGAC : 263363 190 : HisSerProAsnSerGluLeuIleIleAlaSerGlnPheLeuSerGlyPheIleValA : 209 !:!|||!..!:!|||:!!.!!:!!|||!!!||||||||||||||||||||||||! ThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValT 263364 : ACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCA : 263423 210 : snSerSerThrAlaGlyIlePheSerLeuAlaAlaIleLeuGlyAlaHisAlaCysGl : 228 .!:!!!!!|||!.!||| !|||.!!:!!.!!|||:!:!!!!.!!.!||||||||||| hrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGl 263424 : CCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGG : 263480 229 : yGlnLeuSerValValMetThrTrpIleThrGluPheValAsnLysSerLysLysArg : 247 |||||||!:!|||:!!|||:!!|||||||||||||||||||||:!!|||!:! ! ..! yGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGlu 263481 : ACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAG : 263537 248 : GluLys<->MetIlePheArgGluIleGlyLeuIleValGluHisHisLeuArgThrL : 266 .!.||| :!: !|||! !|||||||||:!!|||||||||||||||||||||..!| AsnLysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValL 263538 : AATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTC : 263597 267 : eu : 266 || eu 263598 : TG : 263599 vulgar: AmOr28PSE 15 266 . KQ414889.1 262843 263599 + 761 M 234 702 G 0 3 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262844 263599 761 + . gene_id 7 ; sequence AmOr28PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262844 263599 . + . KQ414889.1 exonerate:protein2genome:local exon 262844 263599 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262844 263599 761 + . alignment_id 7 ; Query AmOr28PSE ; Align 262844 16 702 ; Align 263549 250 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 572 Query range: 12 -> 400 Target range: 284508 -> 287252 13 : AspThrAsnSerAspTyrCysLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyA : 32 ||||||:!!!!! ||| !!:!!|||:!!|||||||||||||||||||||||||||! AspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyV 284509 : GACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCG : 284566 33 : laTrpProSerPheProSerThrThrLysHisGluArgIleIleSerPheLeuLeuAs : 51 .!|||||| ! !! !!!!..!|||! |||!:!|||! !||| ! :!!||| alTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAl 284567 : TATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGC : 284623 52 : nValSerCysTyrSerSerLeuLeuPheThrLeuIleProCysLeuLeuHisMetLeu : 70 :!!! ! !!! !! ! !:!! !||| !|||:!!|||||| !||| !! :!! aLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrVal 284624 : GTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTG : 284680 71 : LeuGluAspGlu<->SerPheTyrLeuLysMetLysValLeuGlySerLeuAlaHisT : 89 |||!!: ! ..!.!! !! !|||!!:|||:!!:!!||| !!|||::! !! LeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheC 284681 : CTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCT : 284740 90 : rpPheValGlyThrMetAsnTyrThrThrLeuLeuLeuArgGlyLysGluIleArgLe : 108 ! .!.:!!!.!.!!!!:!!.||| !! !|||:!!! !|||||| :!!||| !!! ysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGl 284741 : GCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCA : 284797 109 : uCysValGluHisIleArgThrAsp{Tr} >>>> Target Intron 1 >>>> : 117 !||||||:!! !!||||||.!!|||{||} 1012 bp nCysValLysAspIleArgAlaAsp{Tr}++ +- 284798 : ATGCGTGAAGGACATTCGTGCGGAC{TG}gt.........................ac : 285836 118 : {p}GlnThrValThrArgGluGluAspGlnGlnValMetLeuLysAsnAlaLysPheG : 136 {|}! :!! !!:::::||||||::::::::::::||| ! ! !:!|||!:!.!!| {p}LeuSerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleG 285837 : {G}CTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTG : 285893 137 : lyArgTyrValAlaAlaValSerAlaAlaIleLeuGlnSerGlyValAsnCysUnkCy : 155 |||||! !:!!||| ! !!!!!|||!.!.!!:!! ! ||||||! ! !! ! lyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrTh 285894 : GACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACAC : 285950 156 : sCysMetThrIleSerArgThrGluLeuIleGlnIleGlyAsnGluThrArgIleVal : 174 ! :!!! ! ! ! !!|||! !! !! :!!||| ! !!!:!.!..!! !||| rThrValMetProLeuCysThrValArgThrGluIle---IleAspAsnGluThrVal 285951 : CACGGTGATGCCGTTGTGCACAGTACGCACGGAGATC---ATCGACAACGAGACCGTG : 286004 175 : HisValLeuProCysAlaValTyrArgLysLeuIleAspValThrHisSerProAsnS : 194 ... !! ! !!! ! !!:!!|||||| |||:!!||| ! ! !||||||:::! ArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerP 286005 : AGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGT : 286064 195 : erGluLeuIleIleAlaSerGlnPheLeuSerGlyPheIleValAsnSerSerThrAl : 213 !|||:!!:!: ! !! !|||! !|||:!!!.!|||:!!:!! !!||| !|||!. heGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrVa 286065 : TCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGT : 286121 214 : aGlyIlePheSerLeuAlaAlaIleLeuGlyAlaHisAlaCysGlyGlnLeuSerVal : 232 !||| !! !||||||||||||:!:!!!! ! !|||!.!|||||||||!!!!!!:!! lGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIle 286122 : TGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATA : 286178 233 : ValMetThrTrpIleThrGluPheValAsnLysSerLysLysArgGluLysMetIleP : 252 :!!:!!||| !:!: !:!!.!!|||:!! ! !||| !|||:!! !:!!! ! LeuValThrLysLeuAspLysLeuValAspGlyValLysGlyArgLysGlyLeuSerT 286179 : CTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCA : 286238 253 : heArgGlu<-><->IleGlyLeuIleValGluHisHisLeuArgThrLeu{As} >> : 267 !.!||| :!:||| !|||:!!||||||||||||!:!! !|||{..} hrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 286239 : CGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt.. : 286293 268 : >> Target Intron 2 >>>> {n}PheIleSerCysIleGluGluThrIleAsn : 277 408 bp {!}||||||||| ||||||! ! !:!!||| ++{y}PheIleSerGlnIleGluGlyLeuLeuAsn 286294 : .......................ag{T}TTTATATCGCAAATCGAGGGGCTCCTAAAC : 286727 278 : ArgIleIlePheLeuGluValPheArgCysCysLeuHisIleCysCysLeuGlyTyrT : 297 ..!||| !|||:!!||||||.!! !!||| |||:!!||||||! !|||||||||| GluIleCysPheValGluValIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrT 286728 : GAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGGGATATT : 286787 298 : yrIleLeuMet >>>> Target Intron 3 >>>> GluTrpSerAspTyrAsp : 306 ||:!!|||! ! 80 bp ||||||..!.!. !!!: yrLeuLeuThr++ ++GluTrpGluGlnSerGlu 286788 : ATTTACTGACGgt.........................agGAATGGGAGCAAAGTGAA : 286894 307 : LysArgSerMetIleIleTyrPheMetLeuPheValSerValCysPheAsnIlePheI : 326 ! ! !.!!! !|||! |||! !! !|||.!.|||||| !! ||||||:!!|||| ThrIleGlyThrIleThrTyrCysThrLeuLeuValSerPheThrPheAsnValPheI 286895 : ACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCA : 286954 327 : leIleCysTyrIleGlyGluIleLeuAlaGluGlu >>>> Target Intron 4 : 338 ||:!!|||||||||||||||||||||:!!|||::: 74 bp leLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286955 : TACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt..................... : 286992 339 : >>>> SerMetLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProA : 355 !!:!:||||||||| ! !..!||||||! !||||||||| !||||||! ++CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProG 286993 : ....agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAG : 287115 356 : spLysThrIleLeuAspLeuThrLeuIleIleAlaArgSerSerValValValGlnIl : 374 |||||| !! !! !|||! !||||||.!!||| !|||!:! ! !:!!:!!:! lyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLe 287116 : GAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATT : 287172 375 : eThrAlaGlyLysLeuIleHisMetSerIleGlnThrPheThrAspValIleLysThr : 393 !||||||||||||:!!||| !!:!:|||:!!...!:!||| !..!|||! !! ! ! uThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIle 287173 : AACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATA : 287229 394 : GlyPheAlaTyrLeuAsnLeu : 400 ..!!!.:!!|||! !:!!||| AsnLeuSerTyrTyrHisLeu 287230 : AATTTATCCTATTATCATTTG : 287252 vulgar: AmOr28PSE 12 400 . KQ414889.1 284508 287252 + 572 M 62 186 G 0 3 M 42 126 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 50 150 G 1 0 M 86 258 G 0 6 M 12 36 S 0 2 5 0 2 I 0 404 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284509 287252 572 + . gene_id 8 ; sequence AmOr28PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284509 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284509 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286698 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 4 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 3 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284509 287252 572 + . alignment_id 8 ; Query AmOr28PSE ; Align 284509 13 186 ; Align 284698 75 126 ; Align 285839 118 150 ; Align 285989 169 258 ; Align 286253 255 36 ; Align 286700 268 99 ; Align 286879 301 111 ; Align 287064 338 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 451 Query range: 12 -> 337 Target range: 217159 -> 219439 13 : AspThrAsnSerAspTyrCysLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyA : 32 ::: ||| ::: !!:!!|||! !|||||||||!!.|||||||||!!:||| GluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyL 217160 : gagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTC : 217217 33 : laTrpProSerPheProSerThrThrLysHisGluArgIleIleSerPheLeuLeuAs : 51 !||||||!:!! ! !!!!||||||!:! !..!!:!|||:!!! ! |||:!!|| euTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAs 217218 : TTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAA : 217274 52 : nValSerCysTyrSerSerLeuLeuPheThrLeuIleProCysLeuLeuHisMetLeu : 70 |!.!! !||||||.!!! !:!! !||| !!!!:!!||||||! !:!!:!!:!!!!! nAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPhe 217275 : CGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTC : 217331 71 : LeuGluAspGluSerPheTyrLeuLysMetLysValLeuGlySerLeuAlaHisTrpP : 90 ||||||! !|||..!.!!||| !|||:!!|||:!!!!!||| !!||| ! !!! LeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysV 217332 : CTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCG : 217391 91 : heValGlyThrMetAsnTyrThrThrLeuLeuLeuArgGlyLysGluIleArgLeuCy : 109 ! :!!!.! !:!:!!.||| !:!!|||:!!:!!!.! ! !!!:|||||| !|| alMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCy 217392 : TGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTG : 217448 110 : sValGluHisIleArgThrAspTrpGlnThrValThrArgGluGluAspGlnGlnVal : 128 ||||..!...|||..! !||||||::!!.!|||! ! !!|||:!!|||::!:!!!.! sValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArgGluAla 217449 : CGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCG : 217505 129 : MetLeuLysAsnAlaLysPheGlyArgTyrValAlaAlaValSerAlaAlaIleLeuG : 148 |||:!! !||||||!!.||||||||| ! :!!!.! !:!!!!!.!! !.!!:!! MetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetT 217506 : ATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGT : 217565 149 : lnSerGlyValAsnCysUnkCysCysMetThrIleSerArgThrGluLeuIleGlnIl : 167 ! |||||| ! ! ! ! !!!!..!! ! !|||! ! yrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSe 217566 : ACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATC : 217622 168 : eGlyAsnGluThrArgIleValHisValLeuProCysAlaValTyrArgLysLeuIle : 186 ! !|||! !!.!! !! ! !! ! !||| !! ! !! !! !:! ! :!!||| rGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyrIleIle 217623 : GGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATC : 217679 187 : AspValThrHisSerProAsnSerGluLeuIleIleAlaSerGlnPheLeuSerGlyP : 206 |||..! !:!!!!!|||!..!:!|||:!!:!:.!! ! !|||!!.:!!:!!||| AspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyA 217680 : GATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAG : 217739 207 : heIleValAsnSerSerThrAlaGlyIlePheSerLeuAlaAlaIleLeuGlyAlaHi : 225 !:!::!!:!!.!!! !|||:!!!.! !! !|||||||||||| !!!!!.!!.!|| laLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHi 217740 : CTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCA : 217796 226 : sAlaCysGlyGlnLeuSerValValMetThrTrpIleThrGluPheValAsnLysSer : 244 |||||||||||||:!!..!|||:!!|||!.!|||:!: !.!.!!.:!!:!! !!! sAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArg 217797 : TGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGA : 217853 245 : LysLysArgGluLysMetIlePheArgGluIleGlyLeuIleValGluHisHisLeuA : 264 ! ! ! !... ! ! :!: ! !!..!|||!.! !||||||...!!.|||:!!| AlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnHisValA 217854 : GCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTC : 217913 265 : rgThrLeuAsnPheIleSerCysIleGluGluThrIleAsnArgIleIlePheLeuGl : 283 ||! !|||!!.! !:!!!!!! |||! ! ! !:::! ! !.!!!::!!!:! rgIleLeuLysCysValArg***IleValGlyGluCysSerLeuCysPheTrpPheGl 217914 : GGATATTAAAGTGTGTAAGATAGATCGTTGGTGAATGCTCGCTTTGTTTTTGGTTTCA : 217970 284 : uValPhe{Ar} >>>> Target Intron 1 >>>> {g}CysCysLeuHisIle : 291 !! !.!.{!:} 1305 bp {!} ::::::::: nGlyMet{Ly}-+ ++{s}LysTyrIleTyrVal 217971 : GGGGATG{AA}tt.........................ag{a}aaatatatttacgtt : 219299 292 : CysCysLeuGlyTyrTyrIleLeuMetGluTrpSerAspTyrAspLysArgSerMetI : 311 ::: !||||||!.!... !!||| !! !||| : AsnLeuTyrLysPheGluTyrGln***GluTrpLysSerAsnAspValThrSerAlaV 219300 : aatttgtataaatttgaatatcaatAGGAATGGAAATCGAATGATGTAACGAGTGCAG : 219359 312 : leIleTyrPheMetLeuPheValSerValCysPheAsnIlePheIleIleCysTyrIl : 330 !:! !|||.!!!!:|||.!!:!!|||:!: |||||||||||||||...|||||||| alThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIl 219360 : TGACATACATCATTCTACTTATATCCCTcactttcaacattttcatattttgctaCAT : 219416 331 : eGlyGluIleLeuAlaGluGlu : 337 ||||||||||:!!||||||:!: eGlyGluIleValAlaGluGln 219417 : AGGAGAGATCGTTGCTGAACAg : 219439 vulgar: AmOr28PSE 12 337 . KQ414889.1 217159 219439 + 451 M 273 819 S 0 2 5 0 2 I 0 1301 3 0 2 S 1 1 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217160 219439 451 + . gene_id 9 ; sequence AmOr28PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217160 217980 . + . KQ414889.1 exonerate:protein2genome:local exon 217160 217980 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217981 217982 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 217981 219285 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219284 219285 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219286 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219286 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217160 219439 451 + . alignment_id 9 ; Query AmOr28PSE ; Align 217160 13 819 ; Align 219287 287 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 433 Query range: 1 -> 272 Target range: 221330 -> 222143 2 : SerAsnArgSerValAlaIleLysThrAspProAspThrAsnSerAspTyrCysLeuG : 21 ||| !|||..! !:!!:!! !||| ! ! |||||| ! ! ! !!:!!| SerLeuSerSerThrArgValGluTyrAspTyrLysThrAsnValLysLeuSerValG 221331 : AGTCTGTCTTCGACTCGTGTTGAATACGATTACAAGACGAACGTGAAATTGAGCGTGC : 221388 22 : lnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerPheProSerThrTh : 40 |||||!:!||||||.!!|||||||||||||||!.!||||||!:!! !!!:!! !:! lnLeuSerArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaAsnIleSe 221389 : AATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTC : 221445 41 : rLysHisGluArgIleIleSerPheLeuLeuAsnValSerCysTyrSerSerLeuLeu : 59 !! ! |||||| !:!!! !!::|||:!!|||||| !||||||||| !:!! ! rThrValGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLeuIleThr 221446 : CACGGTAGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACG : 221502 60 : PheThrLeuIleProCysLeuLeuHisMetLeuLeuGluAspGluSerPheTyrLeuL : 79 ||| !|||:!!|||||| !|||:!!:!!:!!||||||! |||..! !!||| !! PheLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspValTyrAsnA 221503 : TTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATA : 221562 80 : ysMetLysValLeuGlySerLeuAlaHisTrpPheValGlyThrMetAsnTyrThrTh : 98 :!!!:|||:!!|||||| !!|||::! !!! ! :!!!.! !:!:!!.||| ! rgIleLysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysTyrHisLe 221563 : GAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCT : 221619 99 : rLeuLeuLeuArgGlyLysGluIleArgLeuCysValGluHisIleArgThrAspTrp : 117 !|||:!!||| !! !!!.!!:|||||| !|||:!!|||!.!|||..! !|||||| uLeuIleLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTrpAspTrp 221620 : GTTGATACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGG : 221676 118 : GlnThrValThrArgGluGluAspGlnGlnValMetLeuLysAsnAlaLysPheGlyA : 137 :!!!.!:!!||| !...:!!|||:!!.!.:!!|||:!!:!!||||||! ||||||| LysAsnIleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIlePheGlyA 221677 : AAGAATATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCA : 221736 138 : rgTyrValAlaAlaValSerAlaAlaIleLeuGlnSerGlyValAsnCysUnkCysCy : 156 || :!! ! !:!!!!!.!! !.!!:!! ! |||||| rgArgLeuIleMetIleCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIl 221737 : GGCGATTGATCATGATCTGCACATTTTTCATGTACAGTggtttcgttttttattacat : 221793 157 : sMetThrIleSerArgThrGluLeuIleGlnIleGlyAsnGluThrArgIleValHis : 175 ! ! ! !!!!..!! !|||! !:!! ... eAlaIleProPheSerValGlyLysIleProAlaGlnAspValAsnValThrPheIle 221794 : AGCCATACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttatt : 221850 176 : ValLeuProCysAlaValTyrArgLysLeuIleAspValThrHisSerProAsnSerG : 195 !:!! !! ! !! !!! ||| :!!:!!|||..! !:!!|||||| !:!| ProMetValPheProPheSerArgPheIleValAspThrArgTyrSerProValAsnG 221851 : CCAATGGTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACG : 221910 196 : luLeuIleIleAlaSerGlnPheLeuSerGlyPheIleValAsnSerSerThrAlaGl : 214 ||:!!:!:.!!:!! !|||.!!:!!:!!||| !:!::!!:!!|||! !|||:!!!. luIleLeuPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAl 221911 : AGATTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGC : 221967 215 : yIlePheSerLeuAlaAlaIleLeuGlyAlaHisAlaCysGlyGlnLeuSerValVal : 233 ! !! !||||||!.!|||!!:!!!!.!!.!|||||||||||||||:!!..!|||:!! aAlaCysSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMetGlnValLeu 221968 : AGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTG : 222024 234 : MetThrTrpIleThrGluPheValAsnLysSerLysLysArgGluLysMetIlePheA : 253 |||!:!|||:!:! !.!.!!.:!!||| !! ! ! ! ! !!.! :!: !| MetSerTrpLeuLysHisLeuIleAsnGlyArgAlaAspMetCysAsnAsnValAspA 222025 : ATGAGCTGGCTGAAACATTTGATCAACGGCCGGGCGGATATGTGTAACAACGTGGATA : 222084 254 : rgGluIleGlyLeuIleValGluHisHisLeuArgThrLeuAsnPheIleSerCysIl : 272 ||..!|||!.! !||||||.!.!!.|||:!!|||! !|||.!.!:!:!! !!||||| rgArgIleAlaLysIleValAsnGlnHisValArgIleLeuGlnTyrValArgCysIl 222085 : GGAGAATAGCGAAGATTGTGAATCAACACGTTCGAATATTGCAGTATGTACGTTGTAT : 222141 273 : e : 272 | e 222142 : C : 222143 vulgar: AmOr28PSE 1 272 . KQ414889.1 221330 222143 + 433 M 271 813 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221331 222143 433 + . gene_id 10 ; sequence AmOr28PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221331 222143 . + . KQ414889.1 exonerate:protein2genome:local exon 221331 222143 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221331 222143 433 + . alignment_id 10 ; Query AmOr28PSE ; Align 221331 2 813 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 408 Query range: 4 -> 336 Target range: 226891 -> 228355 5 : SerValAlaIleLysThrAspProAspThrAsnSerAspTyrCysLeuGlnLeuAsnA : 24 |||:!!|||! !:!!!.!||| !.!. ! !!! !:!! !!:!!|||||||||| SerLeuAlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnA 226892 : TCTCTCGCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATC : 226949 25 : rgTrpPheLeuLysProIleGlyAlaTrpProSerPheProSerThrThrLysHisGl : 43 |||||.!.|||||||||:!!||| !|||||||||! ! !!.!!:!:!!::! ! rgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGl 226950 : GTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGG : 227006 44 : uArgIleIleSerPheLeuLeuAsnValSerCysTyrSerSerLeuLeuPheThrLeu : 62 !||| !.!!|||!::|||:!!..! !! !||||||:!! !:!! !||| !||| yArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeu 227007 : AAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTG : 227063 63 : IleProCysLeuLeuHisMetLeuLeuGluAspGluSerPheTyrLeuLysMetLysV : 82 :!! !! !! !|||:!!:!!:!!||||||! :!!.!! !||| !! !:!!|||: ValSerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysM 227064 : GTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAA : 227123 83 : alLeuGlySerLeuAlaHisTrpPheValGlyThrMetAsnTyrThrThrLeuLeuLe : 101 !!:!!||| !!:!!:!! !!:: :!!..! !:!:!!.|||:!!! !||| !!! etIleGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPh 227124 : TGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTT : 227180 102 : uArgGlyLysGluIleArgLeuCysValGluHisIleArgThrAspTrpGlnThrVal : 120 !!.!! ! ! !!:|||! ! !|||||||||!..|||!:! !||||||:!!!.!:!! eHisGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIle 227181 : CCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATC : 227237 121 : ThrArgGluGluAspGlnGlnValMetLeuLysAsnAlaLysPheGlyArgTyrValA : 140 ! ! ! !||||||::!.!.||||||:!!! ! !!||| ! !:!|||||| ! :!! ArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuI 227238 : AGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGA : 227297 141 : laAlaValSerAlaAlaIleLeuGlnSerGlyValAsnCysUnkCysCysMetThrIl : 159 !.!!:!!!!!.!! !.!!:!! |||... !:!:..! leThrIleCysThrPhePheValPheSerSerPheValPhePheTyrIleValValPr 227298 : TCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACC : 227354 160 : eSerArgThrGluLeuIleGlnIleGlyAsnGluThrArgIleValHisValLeuPro : 178 !! !!.!.!!! ! !:!! !! ! !:!!! !!.!!.!! ! ! ! !:!!||| oIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetPro 227355 : TATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCG : 227411 179 : CysAlaValTyrArgLysLeuIleAspValThrHisSerProAsnSerGluLeuIleI : 198 ! ! !! !! !:!! :!! !|||||| !:!!|||||| !!:!|||:!!.!!. PheProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIlePheP 227412 : TTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCT : 227471 199 : leAlaSerGlnPheLeuSerGlyPheIleValAsnSerSerThrAlaGlyIlePheSe : 217 !!:!! !||||||:!!!!!|||.!!:!::!!:!!.!! !|||:!!!.! !! !|| heSerValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSe 227472 : TTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAG : 227528 218 : rLeuAlaAlaIleLeuGlyAlaHisAlaCysGlyGlnLeuSerValValMetThrTrp : 236 |:!!||||||:!:|||!.!!.!|||||||||||||||:!!..!|||:!!:!!:!!||| rMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrp 227529 : TATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGG : 227585 237 : IleThrGluPheValAsnLysSerLysLysArgGluLysMetIlePheArgGluIleG : 256 :!: !.!.!!.:!!:!! !!! ! ! ! !...|||! :!: ! !..!|||! LeuGlyHisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAspAspArgIleA 227586 : CTGGGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCG : 227645 257 : lyLeuIleValGluHisHisLeuArgThrLeu{As} >>>> Target Intron 1 : 267 .! !|||||| ||||||:!!|||! !|||{||} 477 bp laSerIleValThrHisHisValArgIleLeu{As}++ 227646 : CTAGCATCGTCACTCACCACGTTCGAATATTG{AA}gt.................... : 227682 268 : >>>> {n}PheIleSerCysIleGluGluThrIleAsnArgIleIlePheLeuGlu : 283 {|} !! ! !||| !! ! |||::: ||| +-{n}GluTyrTyrIleIleThrValArgThrAsnLysLysThrLysLeu--- 227683 : .....at{C}GAGTATTACATCATAACGGTACGcacgaataaaaaaacaaagtta--- : 228203 284 : ValPheArgCysCysLeuHisIleCysCysLeuGlyTyrTyrIleLeuMetGluTrpS : 303 ..!! ||||||||| ! |||||| ! !:! !!:! ! !||||||! Thr***ArgCysCysSerGlyIleCysIle------PheThrMetSer***GluTrpA 228204 : aCGTAACGATGTTGCAGCGGAATTTGCATT------TTCACGATGTCATAGGAATGGA : 228254 304 : erAspTyrAspLysArgSerMetIleIleTyrPheMetLeuPheValSerValCysPh : 322 :! ! !!: !! !! ! :!!! !|||! !|||.!!:!!||| !! || snProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerPheThrPh 228255 : ATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCTTTAcctt : 228311 323 : eAsnIlePheIleIleCysTyrIleGlyGluIleLeuAlaGlu : 336 |||||||||||||...||||||||||||||||||:!!|||||| eAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGlu 228312 : caatattttcatattttgttaTATAGGAGAAATTGTTGCCGAA : 228355 vulgar: AmOr28PSE 4 336 . KQ414889.1 226891 228355 + 408 M 262 786 S 0 2 5 0 2 I 0 473 3 0 2 S 1 1 M 15 45 G 1 0 M 10 30 G 2 0 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226892 228355 408 + . gene_id 11 ; sequence AmOr28PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226892 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226892 227679 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228156 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228155 228156 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 228157 228355 . + . KQ414889.1 exonerate:protein2genome:local exon 228157 228355 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 226892 228355 408 + . alignment_id 11 ; Query AmOr28PSE ; Align 226892 5 786 ; Align 228158 268 45 ; Align 228203 284 30 ; Align 228233 296 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 395 Query range: 22 -> 269 Target range: 212887 -> 213628 23 : AsnArgTrpPheLeuLysProIleGlyAlaTrpProSerPheProSerThrThrLysH : 42 |||||||||.!!|||||||||! ||| !||||||..! !!! !..!:!! ! AsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspLysSerTyrValSerProI 212888 : AATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGA : 212945 43 : isGluArgIleIleSerPheLeuLeuAsnValSerCysTyrSerSerLeuLeuPheTh : 61 !|||!:!! !|||:!! |||:!!|||..! !||||||.!!! !:!! !!:! leGluLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLe 212946 : TCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCT : 213002 62 : rLeuIleProCysLeuLeuHisMetLeuLeuGluAspGluSerPheTyrLeuLysMet : 80 !:!!||||||||| !|||:!!:!!!!!|||!!:! |||:::...::: ::::!: uValIleProCysSerLeuTyrValPheLeuAspValGluAsnIlePheLysGluIle 213003 : TGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaagagaTC : 213059 81 : LysValLeuGlySerLeuAlaHisTrpPheValGlyThrMetAsnTyrThrThrLeuL : 100 :!!:!!!!!|||! !!!!||| !!! ! !.!!.! ! !!!.||| !:!!|||: GluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuI 213060 : GAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGA : 213119 101 : euLeuArgGlyLysGluIleArgLeuCysValGluHisIleArgThrAspTrpGlnTh : 119 !!|||!.!||| ! !!:|||||| !||||||||||||!!:!:! !||||||:!!!. leLeuHisGlyAspAspIleArgThrCysValGluHisMetLysTyrAspTrpLysAs 213120 : TACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAA : 213176 120 : rValThrArgGluGluAspGlnGlnValMetLeuLysAsnAlaLysPheGlyArgTyr : 138 !:!!|||!.!|||||||||:!!:!!:!!||| ! !||||||!..||||||!:! nIleThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArg 213177 : TATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGG : 213233 139 : ValAlaAlaValSerAlaAlaIleLeuGlnSerGlyValAsnCysUnkCysCysMetT : 158 :!!!.!.!!:!!!!!||| !.!!:!! ! !!!||| !!!..! ! ! ! !:!:. IleValThrIleCysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuValV 213234 : ATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCG : 213293 159 : hrIleSerArgThrGluLeuIleGlnIleGlyAsnGluThrArgIleValHisValLe : 177 .! ! !!!!.!!!!: !!!: ! ! !:!! !.! !! ! !!... !:! alProIleSerAlaAspLysMetValAlaGluAspLeuAsnValThrPheArgGlnMe 213294 : TACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAAT : 213350 178 : uProCysAlaValTyrArgLysLeuIleAspValThrHisSerProAsnSerGluLeu : 196 ! ! ! !!|||! ||| :!!:!!|||||| !:!!|||||| !:!|||:!! tValValProValSerArgPheIleValAspValArgTyrSerProValAsnGluIle 213351 : GGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATA : 213407 197 : IleIleAlaSerGlnPheLeuSerGlyPheIleValAsnSerSerThrAlaGlyIleP : 216 .!!.!! !! !|||.!!:!!:!!||| ! :!::!!:!!:!!! !.!!!.!! ! !! PhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAlaC 213408 : TTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTT : 213467 217 : heSerLeuAlaAlaIleLeuGlyAlaHisAlaCysGlyGlnLeuSerValValMetTh : 235 !||||||||||||:!:!!!!.!!.!|||||||||||||||:!!.!!:!!:!!|||!: ysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSe 213468 : GTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAG : 213524 236 : rTrpIleThrGluPheValAsnLysSerLysLysArgGluLysMetIlePheArgGlu : 254 !|||:!: !.!.!!.:!!:!! !!!:!! ! ! !...|||! :!: ! !..! rTrpLeuGluHisLeuIleAspGlyArgGluAspMetSerLysAsnValAspAspArg 213525 : CTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGCAAGAATGTGGACGACAGA : 213581 255 : IleGlyLeuIleValGluHisHisLeuArgThrLeuAsnPheIle : 269 |||!.!:!!||||||.!.!!.|||:!!|||! !|||!!.!:::!: IleAlaValIleValAsnGlnHisValArgIleLeuLysTrpVal 213582 : ATCGCGGTCATCGTGAACCAGCATGTGCGGATACTGAAGTGGGTG : 213628 vulgar: AmOr28PSE 22 269 . KQ414889.1 212887 213628 + 395 M 247 741 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212888 213628 395 + . gene_id 12 ; sequence AmOr28PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212888 213628 . + . KQ414889.1 exonerate:protein2genome:local exon 212888 213628 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212888 213628 395 + . alignment_id 12 ; Query AmOr28PSE ; Align 212888 23 741 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 371 Query range: 3 -> 271 Target range: 208170 -> 209570 4 : ArgSerValAlaIleLysThrAspProAspThrAsnSerAspTyrCysLeuGlnLeuA : 23 |||..!:!! !:!!!!.! !:!! ! ! !.!:!! !..!!:! !:!!!::|||| ArgGlnIlePheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuA 208171 : AGACAAATATTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGA : 208228 24 : snArgTrpPheLeuLysProIleGlyAlaTrpProSerPheProSerThrThrLysHi : 42 || !||| |||||| !||||||:!!||||||!!!! ! !..! !:!! ! snValTrpThrLeuLysIleIleGlySerTrpProArgSerIleAspArgSerTrpLe 208229 : ACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTT : 208285 43 : sGluArgIleIleSerPheLeuLeuAsnValSerCysTyrSerSerLeuLeuPheThr : 61 |||!.!! ! !.!!|||||||||||| ! !!:!!!!!! !||| !|||! ! uGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIle 208286 : AGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATC : 208342 62 : LeuIleProCysLeuLeuHisMetLeuLeuGluAspGluSerPheTyrLeuLysMetL : 81 :!!|||||| ! !:!! ! !:!!|||! !! !|||..!|||||| !:!!:!:| ValIleProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuL 208343 : GTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAA : 208402 82 : ysValLeuGlySerLeuAlaHisTrpPheValGlyThrMetAsnTyrThrThrLeuLe : 100 ||:!!! !.!!:!!|||::! !!::.!.:!!!.! !! !!!.|||..!! !:!! ysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetTh 208403 : AGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGAC : 208459 101 : uLeuArgGlyLysGluIleArgLeuCysValGluHisIleArgThrAspTrpGlnThr : 119 !:!!|||! ! !!:|||||| !|||||||||:!!:!!..!.!!||||||::!!.! rValArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsn 208460 : TGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAAC : 208516 120 : ValThrArgGluGluAspGlnGlnValMetLeuLysAsnAlaLysPheGlyArgTyrV : 139 ||| !!.!|||||||||::!:!!:!!|||||| ! ||||||!..|||!.!||| ! : ValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysL 208517 : GTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAAC : 208576 140 : alAlaAlaValSerAlaAlaIleLeuGlnSerGlyValAsnCysUnkCysCysMetTh : 158 !! !!.!:!!!!!!.!|||.!!:!! ! .!!|||||| ! euIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLe 208577 : TGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTT : 208633 159 : rIleSerArgThrGluLeuIleGlnIleGlyAsnGluThrArgIleValHisValLeu : 177 ! !! ! !!!: !:!! ! !..!! !.! !! !... !||| uProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeu 208634 : GCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTG : 208690 178 : ProCysAlaValTyrArgLysLeuIleAspValThrHisSerProAsnSerGluLeuI : 197 !! ! !!||| !!:! :!!:!:|||||| !:!!|||||| !:!|||:!!. ValTyrProValProLysPheIleLeuAspValArgTyrSerProValAsnGluIleP 208691 : GTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTT : 208750 198 : leIleAlaSerGlnPheLeuSerGlyPheIleValAsnSerSerThrAlaGlyIlePh : 216 !! !.!! !|||!!.||||||||||||:!!!.!:!!!:!! !|||!.!||| !! heTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCy 208751 : TTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTG : 208807 217 : eSerLeuAlaAlaIleLeuGlyAlaHisAlaCysGlyGlnLeuSerValValMetThr : 235 !.!!|||||||||:!:|||!.! !||||||||||||||||||..!:!!:!!|||:!! sGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSer 208808 : CGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCC : 208864 236 : TrpIleThrGluPheValAsnLysSerLysLysArgGluLysMetIlePheArgGluI : 255 |||!!: !:!!!!.|||:!! ! !!:!! ! ..!||||||! :!: !!:!..!: TrpMetGluLysLeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgL 208865 : TGGATGGAGAAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGT : 208924 256 : leGlyLeuIleValGluHisHisLeuArgThrLeu{As} >>>> Target Intro : 267 !:!.! !|||||||||!!.|||:!!|||..!:!!{||} 596 bp euAlaAsnIleValGluGlnHisValArgValIle{As}++ 208925 : TGGCTAATATCGTGGAGCAGCATGTTCGAGTGATC{AA}gt................. : 208964 268 : n 1 >>>> {n}PheIleSerCys : 271 {|}|||||||||||| +-{n}PheIleSerCys 208965 : ........aa{t}tttatttcttgt : 209570 vulgar: AmOr28PSE 3 271 . KQ414889.1 208170 209570 + 371 M 263 789 S 0 2 5 0 2 I 0 592 3 0 2 S 1 1 M 4 12 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208171 209570 371 + . gene_id 13 ; sequence AmOr28PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208171 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208171 208961 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 209557 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 209556 209557 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 209558 209570 . + . KQ414889.1 exonerate:protein2genome:local exon 209558 209570 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208171 209570 371 + . alignment_id 13 ; Query AmOr28PSE ; Align 208171 4 789 ; Align 209559 268 12 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 363 Query range: 300 -> 405 Target range: 277371 -> 277842 301 : GluTrpSerAspTyrAspLysArgSerMetIleIleTyrPheMetLeuPheValSerV : 320 |||||||||||| !||| !:!!!!|||! !! :!!||||||:!!.!!:!!|||: GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 321 : alCysPheAsnIlePheIleIleCysTyrIleGlyGluIleLeuAlaGluGlu >>> : 338 !:||||||||||||||| !:!!|||||||||||||||||||||.!!|||:!! etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 339 : > Target Intron 1 >>>> SerMetLysValGlyGluValValTyrMetThrA : 349 72 bp !!!! |||||||||||||||||||||||||||: ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 350 : spTrpTyrTyrLeuProAspLysThrIleLeuAspLeuThrLeuIleIleAlaArgSe : 368 !!||||||||||||||||||||| !||||||:!!||| !|||||||||:!!||||| snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 369 : rSerValValValGlnIleThrAlaGlyLysLeuIleHisMetSerIleGlnThrPhe : 387 ||||:::|||::::::|||||||||||||||||||||...||||||:!: ! |||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 388 : ThrAsp >>>> Target Intron 2 >>>> ValIleLysThrGlyPheAlaTy : 397 !||| 84 bp |||||||||||| !|||||||| GlyAsp++ ++ValIleLysThrThrPheAlaTy 277703 : GGCGATgt.........................agGTAATAAAAACCACTTTCgcgta : 277816 398 : rLeuAsnLeuLeuArgGlnValThr : 405 |||||||:::|||||||||..!||| rLeuAsnIleLeuArgGlnThrThr 277817 : tttaaatattctacgCCAAACGACG : 277842 vulgar: AmOr28PSE 300 405 . KQ414889.1 277371 277842 + 363 M 37 111 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277842 363 + . gene_id 14 ; sequence AmOr28PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277842 363 + . alignment_id 14 ; Query AmOr28PSE ; Align 277372 301 111 ; Align 277555 338 156 ; Align 277795 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 333 Query range: 300 -> 405 Target range: 272836 -> 273302 301 : GluTrpSerAspTyrAspLysArgSerMetIleIleTyrPheMetLeuPheValSerV : 320 ||||||!!!|||:!!||| !:!|||:!:! !! |||||||||:!!.!!:!!|||: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 321 : alCysPheAsnIlePheIleIleCysTyrIleGlyGluIleLeuAlaGluGlu >>> : 338 !: |||||||||||||||::!|||||||||||||||||||||.!!|||..! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 339 : > Target Intron 1 >>>> SerMetLysValGlyGluValValTyrMetThrA : 349 70 bp |||:::|||||||||||||||||||||: ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 350 : spTrpTyrTyrLeuProAspLysThrIleLeuAspLeuThrLeuIleIleAlaArgSe : 368 !!|||||||||||||||! !||| !||||||||||||! !|||||||||:!!|||!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 369 : rSerValValValGlnIleThrAlaGlyLysLeuIleHisMetSerIleGlnThrPhe : 387 !|||||||||:!!:!!||||||||||||!:!:!!:!!! !||||||:!: ! |||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 388 : ThrAsp >>>> Target Intron 2 >>>> ValIleLysThrGlyPheAlaTy : 397 !||| 81 bp |||!!:|||!:!!.!|||||||| GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 398 : rLeuAsnLeuLeuArgGlnValThr : 405 |||||||:!!|||||||||..!||| rLeuAsnMetLeuArgGlnThrThr 273277 : CTTAAATATGCTACGACAAACGACA : 273302 vulgar: AmOr28PSE 300 405 . KQ414889.1 272836 273302 + 333 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273302 333 + . gene_id 15 ; sequence AmOr28PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273302 333 + . alignment_id 15 ; Query AmOr28PSE ; Align 272837 301 111 ; Align 273018 338 156 ; Align 273255 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 313 Query range: 300 -> 405 Target range: 254071 -> 254567 301 : GluTrpSerAspTyrAspLysArgSerMetIleIleTyrPheMetLeuPheValSerV : 320 ||||||!!!!!: !||| !:!! !:!:.!!! |||.!!:!: !.!!|||:!!| GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaV 254072 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTG : 254129 321 : alCysPheAsnIlePheIleIleCysTyrIleGlyGluIleLeuAlaGluGlu >>> : 338 || ! ||| |||:::||||||||||||.!!!!:! |||.!!|||:!! alValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 254130 : TTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt... : 254185 339 : > Target Intron 1 >>>> SerMetLysValGlyGluValValTyrMetThrA : 349 92 bp !!!:!!|||||||||||||||||||||||||||| ++CysLeuLysValGlyGluValValTyrMetThrA 254186 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 254308 350 : spTrpTyrTyrLeuProAspLysThrIleLeuAspLeuThrLeuIleIleAlaArgSe : 368 |||||||||||||||||.!.!:!! !||||||||||||! !|||||||||.!!||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSe 254309 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATC : 254365 369 : rSerValValValGlnIleThrAlaGlyLysLeuIleHisMetSerIleGlnThrPhe : 387 |!:!|||||||||:!!|||||||||||||||:::...|||||||||:!! ! |||||| rAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPhe 254366 : GAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTC : 254422 388 : ThrAsp >>>> Target Intron 2 >>>> ValIleLysThrGlyPheAlaTy : 397 !||| 89 bp |||:!!||||||||||||||||| GlyAsp++ ++ValValLysThrGlyPheAlaTy 254423 : GGCGATgt.........................agGTAGTAAAAACAGGATTCGCCTA : 254541 398 : rLeuAsnLeuLeuArgGlnValThr : 405 |||||||:!!||| !!|||:!!:!! rLeuAsnMetLeuCysGlnMetSer 254542 : CTTGAATATGCTTTGTCAAATGTCC : 254567 vulgar: AmOr28PSE 300 405 . KQ414889.1 254071 254567 + 313 M 37 111 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254072 254567 313 + . gene_id 16 ; sequence AmOr28PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254072 254182 . + . KQ414889.1 exonerate:protein2genome:local exon 254072 254182 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254183 254184 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254183 254274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254273 254274 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254275 254430 . + . KQ414889.1 exonerate:protein2genome:local exon 254275 254430 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254431 254432 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254431 254519 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 254518 254519 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254520 254567 . + . KQ414889.1 exonerate:protein2genome:local exon 254520 254567 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254072 254567 313 + . alignment_id 16 ; Query AmOr28PSE ; Align 254072 301 111 ; Align 254275 338 156 ; Align 254520 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 307 Query range: 12 -> 266 Target range: 278561 -> 279338 13 : AspThrAsnSerAspTyrCysLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyA : 32 :!!|||:!!!!! ||| !!:!!|||:!!|||||||||||||||||||||||||||! AsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyV 278562 : AACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCG : 278619 33 : laTrpProSerPheProSerThrThrLysHisGluArgIleIleSerPheLeuLeuAs : 51 .!|||||| ! !! !!!!..!|||! |||!:!|||! !||| ! :!!||| alTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAl 278620 : TATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGC : 278676 52 : nValSerCysTyrSerSerLeuLeuPheThrLeuIleProCysLeuLeuHisMetLeu : 70 :!!! ! !!! !! ! !:!! !||| !|||:!!|||||| !||| !! :!! aLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrVal 278677 : GTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTG : 278733 71 : LeuGluAspGlu<->SerPheTyrLeuLysMetLysValLeuGlySerLeuAlaHisT : 89 |||!!: ! ..!.!! !! !|||!!:|||:!!:!!||| !!|||::! !! LeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheC 278734 : CTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCT : 278793 90 : rpPheValGlyThrMetAsnTyrThrThrLeuLeuLeuArgGlyLysGluIleArgLe : 108 ! :!!!.!|||!!:!!.||| !! !|||:!!! !|||||| :!!||| !! ysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLy 278794 : GCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAA : 278850 109 : uCysValGluHisIleArgThrAspTrpGln<-><-><->ThrValThrArgGluGlu : 124 !||||||.!. !!|||||||||||||||... :!! ! :::|||||| sCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGlu 278851 : ATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagag : 278907 125 : AspGlnGlnValMetLeuLysAsnAlaLysPheGlyArgTyrValAlaAlaValSerA : 144 ::::::::::::||| ! ! !:!|||!:!.!!||||||! !:!!||| ! !!|||| GluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerA 278908 : gagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCG : 278967 145 : laAlaIleLeuGlnSer<->GlyValAsnCysUnkCysCysMetThrIleSerArgTh : 162 ||!.!.!!:!! ! ||| |||||| !! !.....! ||| !!:!:! ! !.. laGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaVa 278968 : CCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGT : 279024 163 : rGluLeuIleGlnIleGlyAsnGluThrArgIleValHisValLeuProCysAlaVal : 181 !... ! |||! !||||||||| !! ! !!!.!.!!!!||| :!! lArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPhePro------Ile 279025 : ACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCG------ATC : 279075 182 : TyrArgLysLeuIleAspValThrHisSerProAsnSerGluLeuIleIleAlaSerG : 201 |||||| |||:!!||| ! ! !||||||:::! !|||:!!:!: ! !! !| TyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetG 279076 : TATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGC : 279135 202 : lnPheLeuSerGlyPheIleValAsnSerSerThrAlaGlyIlePheSerLeuAlaAl : 220 ||! !|||:!!!.!|||:!!:!! !!||| !|||!.!||| !! !|||||| !|| lnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAl 279136 : AATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGC : 279192 221 : aIleLeuGlyAlaHisAlaCysGlyGlnLeuSerValValMetThrTrpIleThrGlu : 239 |:!:!!!! ! !|||!.!|||||||||!!!!!!:!!:!!:!!||| !:!: !:!! aValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLys 279193 : TGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAG : 279249 240 : PheValAsnLysSerLysLysArgGluLysMetIlePheArgGlu<-><->IleGlyL : 257 .!!:!!:!! ! !||| !|||:!!!..:!!! ! !.!||| :!:||| LeuIleAspGlyValLysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyA 279250 : CTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAG : 279309 258 : euIleValGluHisHisLeuArgThrLeu : 266 !|||:!!||||||||||||!:!! !||| spIleIleGluHisHisLeuLysIleLeu 279310 : ATATCATCGAGCATCATCTGAAGATACTG : 279338 vulgar: AmOr28PSE 12 266 . KQ414889.1 278561 279338 + 307 M 62 186 G 0 3 M 44 132 G 0 9 M 31 93 G 0 3 M 29 87 G 2 0 M 74 222 G 0 6 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278562 279338 307 + . gene_id 17 ; sequence AmOr28PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278562 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278562 279338 . + . insertions 21 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 278562 279338 307 + . alignment_id 17 ; Query AmOr28PSE ; Align 278562 13 186 ; Align 278751 75 132 ; Align 278892 119 93 ; Align 278988 150 87 ; Align 279075 181 222 ; Align 279303 255 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 281 Query range: 17 -> 266 Target range: 303196 -> 304866 18 : TyrCysLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerPheP : 37 ||| ! !:!!! !!:!!:!|||.!!|||||| !!:!!||| !||||||:!! ! TyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTrpProAlaValL 303197 : TACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTGGCCAGCCGTGT : 303254 38 : roSerThrThrLysHisGluArgIleIleSerPheLeuLeuAsnValSerCysTyrSe : 56 !..! !||| ! ! ! !:!! !!.!.!! !:!!...:!!||| !!! euAspGluThrAla---GlyPheLeuProLysIleThrIleGlyLeuSer---AsnLe 303255 : TGGACGAAACCGCA---GGATTCCTACCAAAAATCACCATTGGACTCAGT---AATTT : 303305 57 : rSerLeuLeuPheThrLeuIleProCysLeuLeuHisMetLeuLeuGluAspGluSer : 75 ! !||||||||||||:!!|||||||||:!!||||||!!::!!!!!|||.!.:!!..! uValLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnLysAsp 303306 : GGTTCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAAAGGAT : 303362 76 : PheTyrLeuLysMetLysValLeuGlySerLeuAlaHisTrpPheValGlyThrMetA : 95 :!!!:!:!!|||:!!!!!||| !|||::! !!! !!.:!!..! !|||! ThrIleIleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLeuMetL 303363 : ACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTTGATGA : 303422 96 : snTyrThrThrLeuLeuLeuArgGlyLysGluIleArgLeuCysValGluHisIleAr : 114 !.||| !.!!||| ! !||| ! !..!|||!:! !|||:!!|||.!.:!:!: ysTyrTrpAlaLeuAlaThrArgLysProArgIleLysGluCysIleGluGluValGl 303423 : AGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAGGTGCA : 303479 115 : gThrAspTrpGlnThr >>>> Target Intron 1 >>>> ValThrArgGluG : 124 !!:!||||||:!! ! 938 bp ||| ! ! . nSerAspTrpLysGlu++ ++ValGluSerLeuA 303480 : AAGTGATTGGAAAGAGgt.........................agGTGGAATCTCTCA : 304447 125 : luAspGlnGlnValMetLeuLysAsnAlaLysPheGlyArgTyrValAlaAlaValSe : 143 .!|||!:::!!:!!||||||||| !!!.!:!!.!.|||||| !!:!!.!! !:!!!! rgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIleCy 304448 : GAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAATCTG : 304504 144 : rAlaAlaIleLeuGlnSerGlyValAsnCysUnkCysCysMetThrIleSerArgThr : 162 !||| !.!!:!! ! !!!|||! !!.! ! ! :!:! ! ! ! !||| sAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheAlaThr 304505 : CGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCGACC : 304561 163 : GluLeuIleGlnIleGlyAsnGluThrArgIleValHisValLeuProCysAlaValT : 182 ! ! ! ! :!:! !.!. ! !.!|||! :!! ! !||| !! ! !!..!| Gly---ThrTyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProThrT 304562 : GGA---ACGTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACCT : 304618 183 : yrArgLysLeuIleAspValThrHisSerProAsnSerGluLeuIleIleAlaSerGl : 201 ||!!! |||.!!|||||| ! ||||||! !! !||||||:!! ! ! !!! yrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheValHi 304619 : ACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCA : 304675 202 : nPheLeuSerGlyPheIleValAsnSerSerThrAlaGlyIlePheSerLeuAlaAla : 220 .! !:!!!!!|||!:!:!!:!! !!|||! !||||||||| !! !.!!||||||||| sCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAla 304676 : TTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCT : 304732 221 : IleLeuGlyAlaHisAlaCysGlyGlnLeuSerValValMetThrTrpIleThrGluP : 240 :!!!!!!.!.!!|||||||||||||||:!!..!:!!||||||:!! ! :!: !!!:. LeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAspL 304733 : CTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGATC : 304792 241 : heValAsnLysSerLysLysArgGluLysMetIlePheArgGluIleGlyLeuIleVa : 259 !!|||||| !..|||..!..!... :!! !!:!..!:!! ! !||||| euValAsn------SerLysGluSerSerAspLeuAspLysArgLeuIleGluIleVa 304793 : TTGTCAAC------AGCAAAGAATCATCTGATTTAGATAAACGATTAATAGAAATTGT : 304843 260 : lGluHisHisLeuArgThrLeu : 266 ||||||||||||||||! !||| lGluHisHisLeuArgIleLeu 304844 : TGAGCATCATTTGCGAATTTTA : 304866 vulgar: AmOr28PSE 17 266 . KQ414889.1 303196 304866 + 281 M 24 72 G 1 0 M 11 33 G 1 0 M 65 195 5 0 2 I 0 934 3 0 2 M 44 132 G 1 0 M 78 234 G 2 0 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303197 304866 281 + . gene_id 18 ; sequence AmOr28PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303197 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303197 303496 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304866 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304866 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 303197 304866 281 + . alignment_id 18 ; Query AmOr28PSE ; Align 303197 18 72 ; Align 303269 43 33 ; Align 303302 55 195 ; Align 304435 120 132 ; Align 304567 165 234 ; Align 304801 245 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 272 Query range: 300 -> 390 Target range: 283096 -> 283438 301 : GluTrpSerAspTyrAspLysArgSerMetIleIleTyrPheMetLeuPheValSerV : 320 |||||||||||| !||| !:!!!!|||! !! :!!||||||:!!.!!:!!|||: GluTrpSerAspGlyAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 283097 : GAATGGTCTGACGGCGATGTTCAGACTATGACTACGCATTTCATGATCCTTATATCCA : 283154 321 : alCysPheAsnIlePheIleIleCysTyrIleGlyGluIleLeuAlaGluGlu >>> : 338 !:||||||||||||||| !:!!! !|||||||||:!!||||||.!!|||:!! etCysPheAsnIlePheThrValTyrTyrIleGlyLysIleLeuThrGluGln++ 283155 : TgtgtttcaacatttttacAGTATACTATATCGGGAAAATACTAACTGAACAGgt... : 283210 339 : > Target Intron 1 >>>> SerMetLysValGlyGluValValTyrMetThrA : 349 72 bp !!!! |||||||||||||||||||||||||||: ++CysLysLysValGlyGluValValTyrMetThrA 283211 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 283313 350 : spTrpTyrTyrLeuProAspLysThrIleLeuAspLeuThrLeuIleIleAlaArgSe : 368 !!! !!:!||||||||||||||| !||||||:!!||| !|||||||||:!!||||| sn***PheTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 283314 : ATTAGTTTTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 283370 369 : rSerValValValGlnIleThrAlaGlyLysLeuIleHisMetSerIleGlnThrPhe : 387 ||||:::|||::::::|||||||||...|||||||||...|||||| ! |||||| rSerLeuValIleLysIleThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPhe 283371 : TAGCctggtaattaaaattaccgctagcaaattaattcaaatGTCCGCGTACACGTTC : 283427 388 : ThrAspVal : 390 !|||||| AspAspVal 283428 : GACGATGTA : 283438 vulgar: AmOr28PSE 300 390 . KQ414889.1 283096 283438 + 272 M 37 111 5 0 2 I 0 68 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283097 283438 272 + . gene_id 19 ; sequence AmOr28PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 283097 283207 . + . KQ414889.1 exonerate:protein2genome:local exon 283097 283207 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 283208 283209 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 283208 283279 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 283278 283279 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 283280 283438 . + . KQ414889.1 exonerate:protein2genome:local exon 283280 283438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283097 283438 272 + . alignment_id 19 ; Query AmOr28PSE ; Align 283097 301 111 ; Align 283280 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 262 Query range: 181 -> 405 Target range: 300222 -> 302163 182 : TyrArgLysLeuIleAspValThrHisSerProAsnSerGluLeuIleIleAlaSerG : 201 ||| ! !!!!||||||..! ! !||||||!.!! !|||::::::... . TyrAspTrpPheIleAspThrGlnThrSerProThrTyrGluIleValPhePhePheH 300223 : TACGATTGGTTTATCGATACACAAACCAGTCCTACCTACGAgatcgtatttttctttc : 300280 202 : lnPheLeuSerGlyPheIleValAsnSerSerThrAlaGlyIlePheSerLeuAlaAl : 220 .. .!!:!!!.!.!.|||:!! !!!:! !|||.!!!.! !:!||||||||||| isCysPheAlaAlaMetIleMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAl 300281 : actgttTCGCAGCGATGATCATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGC : 300337 221 : aIleLeuGlyAlaHisAlaCysGlyGlnLeuSerValValMetThrTrpIleThrGlu : 239 ||||!!!! !.!!||| !|||||||||:!!..!:!! !|||.!! ! :!: !!!: aIlePheValThrHisIleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAsp 300338 : GATATTCGTCACTCATATCTGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGAT : 300394 240 : PheValAsnLysSerLysLysArgGluLysMetIlePheArgGluIleGlyLeuIleV : 259 .!.|||.!.!:!!!! !:!!!:!!!: ! ! ! :!:! !:!!|||| LeuValGluArgThrGlyGluLysAspAspGlyPro---AspProLeuValValIleV 300395 : CTGGTGGAGAGGACGGGAGAGAAGGACGACGGTCCT---GATCCTTTGGTCGTTATCG : 300451 260 : alGluHisHisLeuArgThrLeu{As} >>>> Target Intron 1 >>>> {n : 267 ||..! !!|||:!!!:!..!|||{!.} 1110 bp {. alArgAspHisValLysValLeu{Ar}++ ++{g 300452 : TTCGAGATCACGTGAAGGTTTTA{AG}gt.........................ag{A : 301587 268 : }PheIleSerCysIleGluGluThrIleAsnArgIleIlePheLeuGluValPheArg : 286 } ! !!!! !.!!... !! !!! ! !!.!:!! ! ::: |||... }AspProCysSerPheArg***ProThrPheHisLeuCysAlaValIleLysPheGlu 301588 : }GACCCGTGTTCCTTCCGTTAGCCAACTTTTCATCTCTGCgctgtaattaaatttgaa : 301642 287 : CysCysLeuHisIleCysCysLeuGlyTyrTyrIleLeuMetGluTrpSerAspTyrA : 306 !|||:!! ! ! !||| !! ! !!!! !||||||..!:!! !| SerThrLeuAsnAlaLysPheLeuArgValIle***Phe***GluTrpGlnAsnSerA 301643 : tctACTTTAAATGCAAAGTTTTTACGAGTAATTTGATTTTAGGAATGGCAAAATAGCG : 301702 307 : spLysArgSerMetIleIleTyrPheMetLeuPheValSerValCysPheAsnIlePh : 325 ||! !! !:!!|||:!:! !!:!|||! |||!!...!||| !! !||||||||||| spThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAsnIlePh 301703 : ACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATATT : 301759 326 : eIleIleCysTyrIleGlyGluIleLeuAlaGluGlu >>>> Target Intron : 338 ||||.!!|||||||||||||||||||||:!!|||:!! 80 bp eIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301760 : CATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt................... : 301800 339 : 2 >>>> SerMetLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuPr : 354 !!!! :!!:!!|||..!!.! !||| !! !||||||||| !!||||| ++CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuPr 301801 : ......agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACC : 301926 355 : oAspLysThrIleLeuAspLeuThrLeuIleIleAlaArgSerSerValValValGln : 373 |! |||! ! !! !||||||! !|||:!!! !!.!! !|||..! ! ! !:!! oAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLys 301927 : AGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAA : 301983 374 : IleThrAlaGlyLysLeuIleHisMetSerIleGlnThrPheThrAsp >>>> Tar : 390 :!!||||||||||||:!!||| !!:!:|||:!:.!.||||||!:!..! LeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSer++ 301984 : CTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTgt........ : 302036 391 : get Intron 3 >>>> ValIleLysThrGlyPheAlaTyrLeuAsnLeuLeuArg : 402 82 bp |||:!:||||||..! ! !.!|||||||||||||||||| ++ValValLysThrSerValValTyrLeuAsnLeuLeuArg 302037 : .................agGTGGTGAAAACATCGGTGGTGTACTTGAATTTACTGCGA : 302152 403 : GlnValThr : 405 !|||||| ThrValThr 302153 : ACAGTTACA : 302163 vulgar: AmOr28PSE 181 405 . KQ414889.1 300222 302163 + 262 M 70 210 G 1 0 M 14 42 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 70 210 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300223 302163 262 + . gene_id 20 ; sequence AmOr28PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300223 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300223 300476 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302163 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302163 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300223 302163 262 + . alignment_id 20 ; Query AmOr28PSE ; Align 300223 182 210 ; Align 300433 253 42 ; Align 301588 268 210 ; Align 301878 338 156 ; Align 302116 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 229 Query range: 336 -> 403 Target range: 264723 -> 265004 337 : GluSerMetLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProAspL : 356 :!!!!!! !||||||||||||||||||||||||:!!:!!||||||||||||||| !!| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 357 : ysThrIleLeuAspLeuThrLeuIleIleAlaArgSerSerValValValGlnIleTh : 375 || !||||||||||||! !||||||||| !||||||||||||||| !!:!!.!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 376 : rAlaGlyLysLeuIleHisMetSerIleGlnThrPheThrAsp >>>> Target I : 390 ||||||||||:!!:!!|||||||||!!: ! ||||||!:!||| 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 391 : ntron 1 >>>> ValIleLysThrGlyPheAlaTyrLeuAsnLeuLeuArgGln : 403 bp |||||||||:!!..!|||.!!||||||||||||||||||||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArgGln 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGCCAA : 265004 vulgar: AmOr28PSE 336 403 . KQ414889.1 264723 265004 + 229 M 53 159 5 0 2 I 0 76 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265004 229 + . gene_id 21 ; sequence AmOr28PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265004 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265004 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265004 229 + . alignment_id 21 ; Query AmOr28PSE ; Align 264724 337 159 ; Align 264963 390 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 215 Query range: 19 -> 211 Target range: 294693 -> 295269 20 : LeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpPro<->SerPheProS : 38 |||:!!! ! !||| !!.!.||||||||||||||| !|||||| ! !!:! ! LeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrSerH 294694 : CTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACAGTC : 294751 39 : erThrThrLysHisGluArgIleIleSerPheLeuLeuAsnValSerCysTyrSerSe : 57 !|||!:!|||! .!.!:!:!!:!!|||.!.:!!|||! !!.!!!!||| ! !!! isThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLeuTh 294752 : ACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTTGAC : 294808 58 : rLeuLeuPheThrLeuIleProCysLeuLeuHisMetLeuLeuGluAspGluSerPhe : 76 !:!!||||||..!|||:!:|||||| !! ! ! :!!!!!.!.! :::::: rValLeuPheValLeuValProCysGlyTyrPheCysValPheHisValLysAsnVal 294809 : CGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaacgtg : 294865 77 : TyrLeuLysMetLysValLeuGlySerLeuAlaHisTrpPheValGlyThrMetAsnT : 96 ||||||||||||:!!|||||| !!:!! !:!!! .!.:!!..!! !:!:!..| LysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuArgT 294866 : aaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCAGGT : 294925 97 : yrThrThrLeuLeuLeuArgGlyLysGluIleArgLeuCysValGluHisIleArgTh : 115 ||!:! !|||:!!|||!:! ! ! !.!!!:!! !|||:!!||| !!|||..!!. yrSerCysLeuValLeuLysThrProAlaPheLysHisCysIleGluAspIleGluAs 294926 : ACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGAGAA : 294982 116 : rAspTrpGlnThrValThrArgGluGluAspGlnGlnValMetLeuLysAsnAlaLys : 134 !||||||:!! !:!! !!.! !||| !!!:! !:!!|||:!!|||||||||! ! nAspTrpLysLeuIleAspAsnProGluHisArgAlaIleMetIleLysAsnAlaMet 294983 : CGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCGATG : 295039 135 : PheGlyArgTyrValAlaAlaValSerAlaAlaIleLeuGlnSerGlyValAsnCysU : 154 !! !!:! :!!.!!!.!!.!! !.!! !|||:!! ! |||..!!.! ! ValThrGlnArgMetThrValAlaPheThrIleIleIleTyrSerSerAlaValSerT 295040 : GTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGTCGT : 295099 155 : nkCysCysMetThrIleSerArgThrGluLeuIleGlnIleGlyAsnGluThrArgIl : 173 !..!!!:... :::... :!::!! ..!!!.:!!!.!!.!! yrHisAlaIleValProPhePheSerAsnAlaLeuGlu---AsnLysLysAsnAsnTh 295100 : ATCACGCCATTGtgccatttttttcaaacgctTTGGAG---AACAAGAAGAATAATAC : 295153 174 : eValHisValLeuProCysAlaValTyrArgLysLeuIleAspValThrHisSerPro : 192 :!!!.!!.!|||||| ! !!! !|||..! !!!!:!!|||!.! ! !|||||| rIleArgAlaLeuProIleProGlyTyrGluLeuPheValAspAlaTyrSerSerPro 295154 : GATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGTCCT : 295210 193 : AsnSerGluLeuIleIleAlaSerGlnPheLeuSerGlyPheIleValAsnSerSer : 211 !.!! !|||:!!|||! !.!! !! |||:!!! !..!|||.!!||||||!.!!!! ThrTyrGluIleIleArgThrHisLeuPheValTyrSerPhePheValAsnLysThr 295211 : ACCTACGAGATCATAAGAACTCATCTCTTTGTTTACTCGTTCTTCGTCAACAAAACT : 295269 vulgar: AmOr28PSE 19 211 . KQ414889.1 294693 295269 + 215 M 15 45 G 0 3 M 132 396 G 1 0 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294694 295269 215 + . gene_id 22 ; sequence AmOr28PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294694 295269 . + . KQ414889.1 exonerate:protein2genome:local exon 294694 295269 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294694 295269 215 + . alignment_id 22 ; Query AmOr28PSE ; Align 294694 20 45 ; Align 294742 35 396 ; Align 295138 168 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 208 Query range: 336 -> 393 Target range: 244655 -> 244826 337 : GluSerMetLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProAspL : 356 :!!!!!:!!|||||||||||||||||||||||||||||||||||||||||||||.!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 357 : ysThrIleLeuAspLeuThrLeuIleIleAlaArgSerSerValValValGlnIleTh : 375 :!! !||||||||||||! !||||||||| !||||||!:!:!!||||||:!!||||| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 376 : rAlaGlyLysLeuIleHisMetSerIleGlnThrPheThrAspValIleLysThr : 393 ||||||||||:!!:!!|||||||||:!! ! |||||| !||||||! !:!!||| rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThr 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 244826 vulgar: AmOr28PSE 336 393 . KQ414889.1 244655 244826 + 208 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244826 208 + . gene_id 23 ; sequence AmOr28PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244826 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244826 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244826 208 + . alignment_id 23 ; Query AmOr28PSE ; Align 244656 337 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 191 Query range: 14 -> 232 Target range: 194162 -> 194807 15 : AsnSerAspTyrCysLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpP : 34 :!!!!!!!:|||..!:!!!:!:!! !:! !.!!|||! !||||||||| !|||| AspThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpP 194163 : GACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGC : 194220 35 : roSerPheProSerThrThrLysHisGluArgIleIleSerPheLeuLeuAsnValSe : 53 ||!!! !||| ! !.!!!:|||:!! ! !||| !! !!.!! ! roArgGluAspSerLeu------ArgAspArgValArgLeuPheAlaGlnThrGlyVa 194221 : CAAGGGAGGATTCTCTT------CGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGT : 194271 54 : rCysTyrSerSerLeuLeuPheThrLeuIleProCysLeuLeuHisMetLeuLeuGlu : 72 ! !!:!:!!! !:!!! !||| !|||:!!||| !:!!:!!:!!! ! !!!!!!: lValPheAlaLeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAsp 194272 : GGTCTTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGAC : 194328 73 : AspGluSerPheTyrLeuLysMetLysValLeuGlySerLeuAlaHisTrpPheValG : 92 !|||..!.!. ! ! |||||||||:!!!.!:!!! !!.! ! ! .!.:!!! CysGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuA 194329 : TGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGG : 194388 93 : lyThrMetAsnTyrThrThrLeuLeuLeuArgGlyLysGluIleArgLeuCysValGl : 111 .!! !!!:!!.!:! !|||:!!:!!:!!!.! !!||||||||||||!!!|||:!! laIleIleLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLe 194389 : CGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCT : 194445 112 : uHisIleArgThrAspTrpGlnThrValThrArgGluGluAspGlnGlnValMetLeu : 130 !.!.!!:..!|||.!.!::::! !||| ! !!|||||||||!:!||||||||| ! uGluMetGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThr 194446 : GGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACG : 194502 131 : LysAsnAlaLysPheGlyArgTyrValAlaAlaValSerAlaAlaIleLeuGlnSerG : 150 !!. !||||||.!!||||||!:! !!.!!.!!:!!! ! !!.!:!!! ! ! .!!| AsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyG 194503 : AATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTG : 194562 151 : lyValAsnCysUnkCysCysMetThrIleSerArgThrGluLeuIleGlnIleGlyAs : 169 ||!.! ! !!!: ! ! !! !:!!||| !||| :!! !.! lyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluArgIle---ValLysGl 194563 : GCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATT---GTCAAGGA : 194616 170 : nGluThrArgIleValHisValLeuProCysAlaValTyrArgLysLeuIleAspVal : 188 .!!:!.!!!!! ! ! !||||||! ! ! ! !! ! !!!.!!! :!! uAspAsnSerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIle 194617 : GGATAACAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATC : 194673 189 : ThrHisSerProAsnSerGluLeuIleIleAlaSerGlnPheLeuSerGlyPheIleV : 208 ! !!||||||! !! !|||:!!! !.!!!.!||||||.!.|||! !.!! !|||: GluAspSerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleI 194674 : GAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCA : 194733 209 : alAsnSerSerThrAlaGlyIlePheSerLeuAlaAlaIleLeuGlyAlaHisAlaCy : 227 !! |||!!!!.!..!||||||!:!||||||!.!|||! !:!! ! !|||..!|| leLeuSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCy 194734 : TATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTG : 194790 228 : sGlyGlnLeuSerVal : 232 |||| !!!!..!||| sGlyLeuPheGluVal 194791 : TGGCTTGTTCGAAGTG : 194807 vulgar: AmOr28PSE 14 232 . KQ414889.1 194162 194807 + 191 M 25 75 G 2 0 M 124 372 G 1 0 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194163 194807 191 + . gene_id 24 ; sequence AmOr28PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194163 194807 . + . KQ414889.1 exonerate:protein2genome:local exon 194163 194807 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 194163 194807 191 + . alignment_id 24 ; Query AmOr28PSE ; Align 194163 15 75 ; Align 194238 42 372 ; Align 194610 167 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 300 -> 400 Target range: 280091 -> 280465 301 : GluTrpSerAspTyrAspLysArgSerMetIleIleTyrPheMetLeuPheValSerV : 320 ||||||..!.!. !!||| ! !.!!! !.!!! |||!!.|||!!!.!!:!!|||: GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerL 280092 : GAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTT : 280149 321 : alCysPheAsnIlePheIleIleCysTyrIleGlyGluIleLeuAlaGlu{G} >>> : 337 !! ||||||:!!||||||:!!|||||||||||||||||||||:!!|||{:} euThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGlu{G}-- 280150 : TAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAA{C}ag... : 280203 338 : > Target Intron 1 >>>> {lu}SerMetLysValGlyGluValValTyrMet : 347 74 bp {!!}!!!:!:|||||||||! ! !..!|||||| +-{ln}CysLeuLysValGlyValSerThrTyrMet 280204 : ......................at{AG}TGCTTAAAAGTCGGCGTGTCAACTTACATG : 280304 348 : ThrAspTrpTyrTyrLeuProAspLysThrIleLeuAspLeuThrLeuIleIleAlaA : 367 ! !||||||||| !||||||! |||! ! !! !! !|||! !||||||.!!||| IleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaV 280305 : ATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCG : 280364 368 : rgSerSerValValValGlnIleThrAlaGlyLysLeuIleHisMetSerIleGlnTh : 386 !|||!:! ! !:!!:!!:!!||||||||||||:!!||| !!:!:|||:!!...!: alSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSe 280365 : TGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAG : 280421 387 : rPheThrAspValIleLysThrGlyPheAlaTyrLeuAsnLeu : 400 !||| !..!|||! !! ! !..!!!.:!!|||! !:!!||| rPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280422 : CTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: AmOr28PSE 300 400 . KQ414889.1 280091 280465 + 180 M 36 108 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280092 280465 180 + . gene_id 25 ; sequence AmOr28PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280092 280200 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280200 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280201 280202 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local intron 280201 280274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280273 280274 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 280275 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280275 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280092 280465 180 + . alignment_id 25 ; Query AmOr28PSE ; Align 280092 301 108 ; Align 280277 338 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 300 -> 390 Target range: 206050 -> 206401 301 : GluTrpSerAspTyrAspLysArgSerMetIleIleTyrPheMetLeuPheValSerV : 320 ||||||..!:!! !!:!!! !! !:!!:!:|||:!:|||.!!! !||| :!!||| GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 321 : alCysPheAsnIlePheIleIleCysTyrIleGlyGluIleLeuAlaGluGlu >>> : 338 ! ||| !:!!||||||:!!||||||||||||:!!:!!||| !!!::!! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 339 : > Target Intron 1 >>>> SerMetLysValGlyGluValValTyrMetThrA : 349 81 bp !:! |||||| !..! !! !! !..!: ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 350 : spTrpTyrTyrLeuProAspLysThrIleLeuAspLeuThrLeuIleIleAlaArgSe : 368 !!|||||| !||||||:!!!:! ! ! !..!:!!! !||||||||||||! !|| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 369 : rSerValValValGlnIleThrAlaGlyLysLeuIleHisMetSerIleGlnThrPhe : 387 |!:! ! !:!!:!!:!!||||||||||||:!!.!!.!.||||||:!! !:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 388 : ThrAspVal : 390 ||||||||| ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: AmOr28PSE 300 390 . KQ414889.1 206050 206401 + 178 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 178 + . gene_id 26 ; sequence AmOr28PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 178 + . alignment_id 26 ; Query AmOr28PSE ; Align 206051 301 111 ; Align 206243 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 263 -> 337 Target range: 224128 -> 224434 264 : ArgThrLeuAsnPheIleSerCysIleGluGluThrIleAsnArgIleIlePheLeuG : 283 !:! !! !!..|||:!!!!! !! !|||:!!.!!:!:.!.!:!:!! |||:!!| LysCysCysArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValG 224129 : AAATGTTGCAGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGG : 224186 284 : luValPheArgCysCysLeuHisIleCysCysLeuGlyTyrTyrIleLeuMet >>> : 301 || !!.!. !!||| |||:!!|||||| !||||||||||||:!!:!!:!! luPheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleVal++ 224187 : AATTTCTAGGCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTGgt... : 224242 302 : > Target Intron 1 >>>> GluTrpSerAspTyrAspLysArgSerMetIleI : 312 84 bp |||||||||... !! !! !||| !:!:! ++GluTrpSerSerSerHisLeuThrSerAlaValT 224243 : ......................aggagtggagttcgagtcATTTAACTAGCGCGGTGA : 224357 313 : leTyrPheMetLeuPheValSerValCysPheAsnIlePheIleIleCysTyrIleGl : 331 !||||||!!:|||.!!:!!|||::: |||||||||||||||...||||||||||| hrTyrPheIleLeuLeuMetSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 224358 : CTTACTTCATACTACTCATGTCtcttactttcaatatttttatattttgttacatAGG : 224414 332 : yGluIleLeuAlaGluGlu : 337 ||||:!::!!||||||::: yGluLeuValAlaGluGln 224415 : AGAGCTGGTAGCTGAAcag : 224434 vulgar: AmOr28PSE 263 337 . KQ414889.1 224128 224434 + 170 M 37 111 5 0 2 I 0 80 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224129 224434 170 + . gene_id 27 ; sequence AmOr28PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224129 224239 . + . KQ414889.1 exonerate:protein2genome:local exon 224129 224239 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224240 224241 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224240 224323 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224322 224323 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224129 224434 170 + . alignment_id 27 ; Query AmOr28PSE ; Align 224129 264 111 ; Align 224324 301 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 17 -> 116 Target range: 299689 -> 299989 18 : TyrCysLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerPheP : 37 ||| ||||||:!! !!:!|||!!.|||||||||||||||!.!|||! !! !.!. TyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpArgLeuLeuA 299690 : TACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGCGATTGCTAG : 299747 38 : roSer<->ThrThrLysHisGluArgIleIleSerPheLeuLeuAsnValSerCysTy : 55 !..! :!!!:!|||! |||!.!:!!:!!|||.!!:!!|||! ..!! !|||!: spGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMetThrIleCysPh 299748 : ATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATGACAATATGCTT : 299804 56 : rSerSerLeuLeuPheThrLeuIleProCysLeuLeuHisMetLeuLeuGluAspGlu : 74 !|||||||||!!!|||! !:!!:!:|||! ! !! !:!!!!:!!!!!!! !!!::!! eSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePhePheAlaGluLys 299805 : CTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCTTCGCGGAGAAA : 299861 75 : SerPheTyrLeuLysMetLysValLeuGlySerLeuAlaHisTrpPheValGlyThrM : 94 |||.!.:!!:!!|||:!!||||||!!!||| !!:!!!.! !!! .!! !..!! !: SerIleHisValLysValLysValPheGlyProValGlyPheCysLeuSerSerIleV 299862 : AGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCATCG : 299921 95 : etAsnTyrThrThrLeuLeuLeuArgGlyLysGluIleArgLeuCysValGluHisIl : 113 !:!!.||| ! !|||! !|||!.!||| ! !.!!..!! !|||:!!:!!|||:! alLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCysIleGlnHisVa 299922 : TCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGCATCCAACACGT : 299978 114 : eArgThrAsp : 116 !..!! !||| lGluArgAsp 299979 : CGAGAGAGAC : 299989 vulgar: AmOr28PSE 17 116 . KQ414889.1 299689 299989 + 160 M 21 63 G 0 3 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299690 299989 160 + . gene_id 28 ; sequence AmOr28PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299690 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299690 299989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299690 299989 160 + . alignment_id 28 ; Query AmOr28PSE ; Align 299690 18 63 ; Align 299756 39 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 297 -> 340 Target range: 264528 -> 264657 298 : IleLeuMetGluTrpSerAspTyrAspLysArgSerMetIleIleTyrPheMetLeuP : 317 :!!!!!..!||||||..!..!:!:||| ::::::::: !! !|||||||||:!!. ValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleL 264529 : GTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATAC : 264586 318 : heValSerValCysPheAsnIlePheIleIleCysTyrIleGlyGluIleLeuAlaGl : 336 !.:!!|||:!!||| !|||||||||:!!!!:|||||||||||||||||||||.!!|| euIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGl 264587 : TGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGA : 264643 337 : uGluSerMetLys : 340 |::: :::||| uGlnValIleLys 264644 : Gcaggtaattaaa : 264657 vulgar: AmOr28PSE 297 340 . KQ414889.1 264528 264657 + 129 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264529 264657 129 + . gene_id 29 ; sequence AmOr28PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264529 264657 . + . KQ414889.1 exonerate:protein2genome:local exon 264529 264657 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264529 264657 129 + . alignment_id 29 ; Query AmOr28PSE ; Align 264529 298 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 296 -> 337 Target range: 210651 -> 210774 297 : TyrIleLeuMetGluTrpSerAspTyrAspLysArgSerMetIleIleTyrPheMetL : 316 !:!:!!||| !||||||..!..! ! ||| ! !|||! :!:! |||.!.:!:| PheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValL 210652 : TTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTAC : 210709 317 : euPheValSerValCysPheAsnIlePheIleIleCysTyrIleGlyGluIleLeuAl : 335 ||.!!..!|||||| |||||||||||||||.!!|||||||||||||||:!:||||| euLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAl 210710 : TCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGC : 210766 336 : aGluGlu : 337 ||||:!: aGluGln 210767 : TGAACAg : 210774 vulgar: AmOr28PSE 296 337 . KQ414889.1 210651 210774 + 119 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210652 210774 119 + . gene_id 30 ; sequence AmOr28PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 210652 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210652 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210652 210774 119 + . alignment_id 30 ; Query AmOr28PSE ; Align 210652 297 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 295 -> 337 Target range: 214614 -> 214740 296 : TyrTyrIleLeuMetGluTrpSerAspTyrAspLysArgSerMetIleIleTyrPheM : 315 ::: |||||| ||||||!:!... !!:!! !! !!!!! :!!! !||| ! : PheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValV 214615 : tttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGG : 214672 316 : etLeuPheValSerValCysPheAsnIlePheIleIleCysTyrIleGlyGluIleLe : 334 !!|||!:!:!!|||::: |||||||||||||||...|||||||||||||||:!!:! alLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuVa 214673 : TGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGGCGAGCTTGT : 214729 335 : uAlaGluGlu : 337 !:!!|||:!! lSerGluGln 214730 : GTCTGAACAG : 214740 vulgar: AmOr28PSE 295 337 . KQ414889.1 214614 214740 + 110 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214615 214740 110 + . gene_id 31 ; sequence AmOr28PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214615 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214615 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214615 214740 110 + . alignment_id 31 ; Query AmOr28PSE ; Align 214615 296 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 293 -> 337 Target range: 305079 -> 305211 294 : LeuGlyTyrTyrIleLeuMetGluTrpSerAspTyrAspLysArgSerMetIleIleT : 313 ||| |||::: ..!!!:|||..!..! !:!!! !|||:!:! !! !| LeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrThrT 305080 : TTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACAT : 305137 314 : yrPheMetLeuPheValSerValCysPheAsnIlePheIleIleCysTyrIleGlyGl : 332 || :!!|||.!.:!!|||||| |||||||||||||||:!!|||||||||||||| yrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGl 305138 : ATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGA : 305194 333 : uIleLeuAlaGluGlu : 337 ||||||| !|||:!! uIleLeuMetGluLys 305195 : GATTCTTATGGAAAAG : 305211 vulgar: AmOr28PSE 293 337 . KQ414889.1 305079 305211 + 109 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305080 305211 109 + . gene_id 32 ; sequence AmOr28PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305080 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305080 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305080 305211 109 + . alignment_id 32 ; Query AmOr28PSE ; Align 305080 294 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 591 Query range: 4 -> 258 Target range: 204215 -> 204980 5 : HisThrGluLysAspLeuLysGlnAlaPhe<->TyrAlaGlnSerPheLeuLysIleV : 23 ....!!|||:!!||||||!:! ! ||| !:!!.!:!! !!.!!||| !|||| ArgAlaGluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleV 204216 : AGGGCAGAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAG : 204273 24 : alGlyValTrpProIleProIleGlySerProLeuSerSerLysIleArgAsnTrpPh : 42 |||||!.!||||||||||||:!:..!||| !!! !! !!!!!:!:!! !... ! .! alGlyAlaTrpProIleProValAsnSerSerProPheThrArgLeuValArgArgIl 204274 : TCGGTGCGTGGCCGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAAT : 204330 43 : eIleThrPhePheSerLeuPheLeuGlnIleCysIleValGlyProCysIleLeuVal : 61 . ! ! ! !!!!! |||||| ... :!::!!! !||| !!:!!||| ! eGluHisValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyr 204331 : AGAACACGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTAC : 204387 62 : MetPheLeuLysGluLysAsnGlyLysArgLysIleAsnLeuPheLysLeuLeuThrA : 81 :!!||||||||||||||||||||||||! !::::!:!!.:!!.!! !! !:!!..!| ValPheLeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValA 204388 : GTGTTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGA : 204447 82 : snThrLeuAsnGlnLeuPheLysTyrIleIleThrLeuAsnArgAlaAsnGluLeuAl : 100 || ! !! |||!!!||||||||| !:!!! !||| !!||| !:!!:!!:!! snCysSerIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGl 204448 : ACTGCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCA : 204504 101 : aIleAlaMetAsnGluIleLysAsnAspTrpLeuThrAlaThrSerGluAspArgTrp : 119 !! ::!:!!||| |||!:!..!||||||:!! !||||||..!|||:!!|||! ! nLysSerLeuAsnThrIleArgArgAspTrpIleGluAlaThrAspGluAsnArgLeu 204505 : GAAGAGTTTGAACACCATCAGACGCGACTGGATAGAGGCTACGGATGAAAATCGGTTG : 204561 120 : IlePheThrAlaAsnSerLysMetGlyGlnLysValMetLeuIleValAlaValThrV : 139 |||||| !:!!!!.:!!|||!!:|||!:!!:!|||:!!||||||!.!|||!.!|||: IlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrM 204562 : ATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTA : 204621 140 : alTyrSerSerGlyLeuGlyTyrArgMetLeuLeuProIleLeuLysGlyLysIleVa : 158 !!|||.!!.!!|||||| !!||||||! !:!!||||||:!:|||!:!|||! !||||| etTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleVa 204622 : TGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGT : 204678 159 : lLeuProAsnAsnValThrIleArgLeuLeuProCysProThrTyrPheThrPhePhe : 177 | !|||:!!|||||||||||||||! !||||||||||||..!||||||...|||||| lThrProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePhe 204679 : AACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttcttt : 204735 178 : AsnGluLeuValSerProTyrTyrGluMetIlePheMetLeuGlnLeuLeuAlaGlyP : 197 ||||||! ! !|||||| !!||||||!!::!!|||!!:||||||:!!:!!||||||| AsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyP 204736 : aacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTT : 204795 198 : hePheSerTyrThrValLeuAsnGlyThrValGlyIleSerLeuMetLeuSerLeuHi : 216 || !!!!!|||.!!|||:!!!:!|||||| !|||!!:!!! !:!!!!! !||||| heValThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHi 204796 : TTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCA : 204852 217 : sMetCysSerLeuLeuLysIleLeuThrArgLysMetAlaAsnLeuThrAspArgSer : 235 | !||||||:!!|||!:!||||||..!!.!|||||| ! |||..!|||!:!:!! sAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAla 204853 : CGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCG : 204909 236 : IleThrSerGluAsnIleIleGlnGluLysIleValGluIleValGluTyrGlnThrL : 255 !! !!!!|||!..:!!:!:!!...!||||||!.!!!:||||||||||||||||||| AspMetThrGluThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrL 204910 : GACATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGA : 204969 256 : ysIleLysArg : 258 ||||||||||| ysIleLysArg 204970 : AGATAAAGAGG : 204980 vulgar: AmOr5 4 258 . KQ414889.1 204215 204980 + 591 M 10 30 G 0 3 M 244 732 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204216 204980 591 + . gene_id 1 ; sequence AmOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204216 204980 . + . KQ414889.1 exonerate:protein2genome:local exon 204216 204980 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 204216 204980 591 + . alignment_id 1 ; Query AmOr5 ; Align 204216 5 30 ; Align 204249 15 732 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 294 Query range: 291 -> 396 Target range: 206050 -> 207607 292 : GluTrpGluAsnHisAsnIleAlaAlaIleValValHisPheMetLeuLeuGlyThrC : 311 ||||||||||||:!!|||! !.!!|||:!!:!!|||:!!.!!! !|||! ! !:!!| GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 312 : ysIlePheIleIleTyrIleValCysTyrIleGlyGlnLeuLeuLeuAspGlu >>> : 329 ||! !||| !:!!!:!|||:!!|||||||||||||||||||||:!!|||:!! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 330 : > Target Intron 1 >>>> SerAsnAsnLeuAlaGlnGlnCysIleThrLeuS : 340 81 bp !:!:!! !:!!!.! ! !! ! !|||:!!! ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 341 : erTrpTyrHisPheProThrArgLysAlaArgCysLeuIleLeuMetIleIleMetSe : 359 :!||||||!.!.!!|||!.!||| ! ||||||! !:!!||||||!!:||| !||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 360 : rAsnTyrProValLysLeuThrAlaAlaLysValValAspValSerLeuThrThrPhe : 378 ||||||||||:!!||||||||||||!.!|||:!! !!!!::!!||||||.!!!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 379 : ThrAsp >>>> Target Intron 2 >>>> ValMetLysAlaAlaMetGlyTy : 388 |||||| 1161 bp |||||||||!.!||||||||||| ThrAsp++ ++ValMetLysValAlaMetGlyTy 206391 : ACCGATgt.........................agGTAATGAAGGTGGCGATGGGATA : 207581 389 : rLeuAsnMetLeuArgGluValIle : 396 |!!!|||!!:||||||||||||:!! rPheAsnIleLeuArgGluValVal 207582 : CTTCAACATACTCCGTGAAGTCGTA : 207607 vulgar: AmOr5 291 396 . KQ414889.1 206050 207607 + 294 M 37 111 5 0 2 I 0 77 3 0 2 M 52 156 5 0 2 I 0 1157 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 207607 294 + . gene_id 2 ; sequence AmOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206398 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206398 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206399 206400 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206399 207559 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 207558 207559 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 207560 207607 . + . KQ414889.1 exonerate:protein2genome:local exon 207560 207607 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 207607 294 + . alignment_id 2 ; Query AmOr5 ; Align 206051 292 111 ; Align 206243 329 156 ; Align 207560 381 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 216 Query range: 291 -> 381 Target range: 305100 -> 305783 292 : GluTrpGluAsnHisAsnIleAlaAlaIleValValHisPheMetLeuLeuGlyThrC : 311 !!:||||||!:! !|||! !!.!::!:!!..!..!:!! :!!|||||| !:!! AspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValLeuLeuIleSerV 305101 : GATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGTTACTGATATCTG : 305158 312 : ysIlePheIleIleTyrIleValCysTyrIleGlyGlnLeuLeuLeuAspGlu >>> : 329 ! !|||! !|||!:!|||:!!||||||||||||:!!:!!|||:!!!!::!! alThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMetGluLys++ 305159 : TAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTATGGAAAAGgt... : 305214 330 : > Target Intron 1 >>>> SerAsnAsnLeuAlaGlnGlnCysIleThrLeuS : 340 413 bp |||!:!!:!:!!!.! !...|||.!!! !:!!| ++SerSerSerValGlyLeuSerCysPheMetIleS 305215 : ......................agAGCAGTAGCGTTGGATTATCCTGTTTTATGATCA : 305658 341 : erTrpTyrHisPheProThrArgLysAlaArgCysLeuIleLeuMetIleIleMetSe : 359 |||||||||||!!.||||||!:!! ! !!.! !!|||||||||!!:||| !||||| erTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleLeuIleIleAlaMetSe 305659 : GTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTTTAATCATTGCCATGTC : 305715 360 : rAsnTyrProValLysLeuThrAlaAlaLysValValAspValSerLeuThrThrPhe : 378 |!:! !!|||!.!|||:!!!:!|||!.!||||||||||||:!!||||||:!!|||||| rSerAsnProAlaLysIleSerAlaGlyLysValValAspLeuSerLeuSerThrPhe 305716 : AAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTATCTTTATCCACATTT : 305772 379 : ThrAspVal : 381 !:!!||| GlyAsnVal 305773 : GGAAACGTG : 305783 vulgar: AmOr5 291 381 . KQ414889.1 305100 305783 + 216 M 37 111 5 0 2 I 0 409 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305101 305783 216 + . gene_id 3 ; sequence AmOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305101 305783 216 + . alignment_id 3 ; Query AmOr5 ; Align 305101 292 111 ; Align 305625 329 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 213 Query range: 19 -> 256 Target range: 208239 -> 208956 20 : LeuLysIleValGlyValTrpProIleProIleGlySerProLeuSerSerLysIleA : 39 |||||||||:!!||| !||||||! ! !!|||! ! !! !!! !! !..!!!.! !! LeuLysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerG 208240 : TTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCC : 208297 40 : rgAsnTrpPheIleThrPhePheSerLeuPheLeuGlnIleCysIleValGlyProCy : 58 :!:!! .!!:!!!.! ! .!!|||! !! !|||! !! !|||||| !||| lnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProTh 208298 : AGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGAC : 208354 59 : sIleLeuValMetPheLeuLysGluLysAsnGlyLysArgLysIleAsnLeuPheLys : 77 ! !:!! !! !.!!||| !! :!!:!! ! ! !:!!:!!!!.:!!! !!.. rGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSer 208355 : CGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGC : 208411 78 : LeuLeuThrAsnThrLeuAsnGlnLeuPheLysTyrIleIleThrLeuAsnArgAlaA : 97 !|||!:! ! !:!!! !!!! ||||||:!:|||! ! ! !|||! !. AlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluG 208412 : GCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGG : 208471 98 : snGluLeuAlaIleAlaMetAsnGluIleLysAsnAspTrpLeuThrAlaThr<->Se : 115 .!!!::!! !! ..!:!:.!. ! :!!:!! !|||||| !!.!!.! ! .. lyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGl 208472 : GTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGA : 208528 116 : rGluAspArgTrpIlePheThrAlaAsnSerLysMetGlyGlnLysValMetLeuIle : 134 !||||||||| !|||.!. !! !|||:!!!...!.!.!::!|||:!!!!::!!||| uGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIle 208529 : GGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATA : 208585 135 : ValAlaValThrValTyrSerSerGlyLeuGlyTyrArgMetLeuLeuProIleLeuL : 154 !!.!!.! !:!!|||.!!.!. ::: ||| :!: !||||||:!! !: CysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrA 208586 : TGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTC : 208645 155 : ysGlyLysIleValLeuPro<->AsnAsnValThrIleArgLeuLeuProCysProTh : 172 :!! !|||:!!||| ! ! ..!|||:!!||| !||| !||| !! !|||.. rgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProVa 208646 : GAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGT : 208702 173 : rTyrPheThrPhePheAsnGluLeuValSerProTyrTyrGluMetIlePheMetLeu : 191 ! ! !.!!.!.:!!! ! ! !|||||| !!|||!!:.!!!:!! !:!! lProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrVal 208703 : TCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTA : 208759 192 : GlnLeuLeuAlaGlyPhePheSerTyrThrValLeuAsnGlyThrValGlyIleSerL : 211 |||||||||:!!|||||| !!:!!:!!!.!:!! ! !|||.!! !|||:!::!! GlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaA 208760 : CAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCG : 208819 212 : euMetLeuSerLeuHisMetCysSerLeuLeuLysIleLeuThrArgLysMetAlaAs : 230 !:!!|||:!!:!!||| !|||.!!! !|||:!!||||||! ! ! !|||! !!! laLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLy 208820 : CGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAA : 208876 231 : nLeuThrAspArgSerIleThrSerGluAsnIleIleGlnGluLysIleValGluIle : 249 .|||..!||| !! !! !..!|||!!.! !:!:.!.:!!!:!:!:!.!.!.||| sLeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIle 208877 : GTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATC : 208933 250 : ValGluTyrGlnThrLysIle : 256 |||||| ! !!...!::!:!: ValGluGlnHisValArgVal 208934 : GTGGAGCAGCATGTTCGAGTG : 208956 vulgar: AmOr5 19 256 . KQ414889.1 208239 208956 + 213 M 95 285 G 0 3 M 46 138 G 0 3 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208240 208956 213 + . gene_id 4 ; sequence AmOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208240 208956 . + . KQ414889.1 exonerate:protein2genome:local exon 208240 208956 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208240 208956 213 + . alignment_id 4 ; Query AmOr5 ; Align 208240 20 285 ; Align 208528 115 138 ; Align 208669 161 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 213 Query range: 18 -> 233 Target range: 278600 -> 279260 19 : PheLeuLysIleValGlyValTrpProIleProIleGlySerProLeuSerSerLysI : 38 ||||||||| :!!||||||||||||:!! !:!! !! ! !! !! !..!|||| PheLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysI 278601 : TTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGA : 278658 39 : leArgAsnTrpPheIleThrPhePheSerLeuPheLeuGlnIleCysIleValGlyPr : 57 ||!!!::! ! !!:!!.!!!!..!!|||! !|||||| ! !! !:!!:!!! !|| leSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValPr 278659 : TCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACC : 278715 58 : oCysIleLeuValMetPheLeu<->LysGluLysAsnGlyLysArgLysIleAsnLeu : 75 |||| !||| !! ! ||| ||| :!! ! ! ! !||||||!!.:!! oCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMet 278716 : GTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATG : 278772 76 : PheLysLeuLeuThrAsnThrLeuAsnGlnLeuPheLysTyrIleIleThrLeuAsnA : 95 .!! ! !|||!:! ! ! !! ! !.!!|||||| !||| !:!!:::| IleGlyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerA 278773 : ATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGC : 278832 96 : rgAlaAsnGluLeuAlaIleAlaMetAsnGluIleLysAsnAspTrpLeuThrAlaTh : 114 ||!.!..!:!!:!!!.!! !..!:!!|||!!:|||:::!..||||||! ! !.!! rgGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLe 278833 : GCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACT : 278889 115 : rSer<-><-><-><->GluAspArgTrpIlePheThrAlaAsnSerLysMetGlyGln : 129 !||| |||:::||| |||.!.! !! !!:!:!!!:!!!:|||!:! uSerTyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArg 278890 : TTCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGA : 278946 130 : LysValMetLeuIleValAlaValThrValTyrSerSerGlyLeuGlyTyrArgMetL : 149 ...:!! !:!!.!! !|||! ! !:!!||||||.!!|||:!! !|||! ! : SerLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaV 278947 : TCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCG : 279006 150 : euLeuProIleLeuLysGlyLysIleValLeuProAsnAsnValThrIleArgLeuLe : 168 !!:!!|||:!:!!! !! !:::! ! !:!! !:!!|||! !|||:!:|||! !! alMetProLeuPheAlaValArgThrGluIleIleAspAsnGluThrValArgSerGl 279007 : TGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCA : 279063 169 : uProCysProThrTyrPheThrPhePheAsnGluLeuValSerProTyrTyrGluMet : 187 ! !!! !|||! !||| ! !.!!.!!:!! !! !..!||||||! !:!|||!!: nAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIle 279064 : AGCGTTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATC : 279120 188 : IlePheMetLeuGlnLeuLeuAlaGlyPhePheSerTyrThrValLeuAsnGlyThrV : 207 :!: .!.:!!|||! !||||||!.!||| !!! !|||:!!||| ! !|||.!! ValGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaC 279121 : GTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTT : 279180 208 : alGlyIleSerLeuMetLeuSerLeuHisMetCysSerLeuLeuLysIleLeuThrAr : 226 !.!!:!:! ! !:!!!!! !:!!|||:!:|||.!!! !!!!!:!||||||..!! ysSerLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValTh 279181 : GCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGAC : 279237 227 : gLysMetAlaAsnLeuThrAsp : 233 !|||:!!! !!!.|||! !||| rLysLeuAspLysLeuIleAsp 279238 : AAAGCTGGATAAGCTCATCGAC : 279260 vulgar: AmOr5 18 233 . KQ414889.1 278600 279260 + 213 M 46 138 G 0 3 M 51 153 G 0 12 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278601 279260 213 + . gene_id 5 ; sequence AmOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278601 279260 . + . KQ414889.1 exonerate:protein2genome:local exon 278601 279260 . + . insertions 15 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278601 279260 213 + . alignment_id 5 ; Query AmOr5 ; Align 278601 19 138 ; Align 278742 65 153 ; Align 278907 116 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 211 Query range: 18 -> 233 Target range: 284547 -> 285207 19 : PheLeuLysIleValGlyValTrpProIleProIleGlySerProLeuSerSerLysI : 38 ||||||||| :!!||||||||||||:!! !:!! !! ! !! !! !..!|||| PheLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysI 284548 : TTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGA : 284605 39 : leArgAsnTrpPheIleThrPhePheSerLeuPheLeuGlnIleCysIleValGlyPr : 57 ||!!!::! ! !!:!!.!!!!..!!|||! !|||||| ! !! !:!!:!!! !|| leSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValPr 284606 : TCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACC : 284662 58 : oCysIleLeuValMetPheLeu<->LysGluLysAsnGlyLysArgLysIleAsnLeu : 75 |||| !||| !! ! ||| ||| :!! ! ! ! !||||||!!.:!! oCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMet 284663 : GTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATG : 284719 76 : PheLysLeuLeuThrAsnThrLeuAsnGlnLeuPheLysTyrIleIleThrLeuAsnA : 95 .!! ! !|||!:! ! !:!!! ! !.!!|||||| !||| !:!!:::| IleGlyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerA 284720 : ATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGC : 284779 96 : rgAlaAsnGluLeuAlaIleAlaMetAsnGluIleLysAsnAspTrpLeuThrAlaTh : 114 ||!.!..!:!!:!!!.! !..!:!!!!.!!:|||::: ||||||! ! !.!! rgGlyGlyLysIleGlyGlnCysValLysAspIleArgAlaAspTrpSerLeuThrLe 284780 : GCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCT : 284836 115 : rSer<-><-><-><->GluAspArgTrpIlePheThrAlaAsnSerLysMetGlyGln : 129 !||| |||:::||| |||.!.! !! !!:!:!!!:!!!:|||!:! uSerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArg 284837 : TTCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGA : 284893 130 : LysValMetLeuIleValAlaValThrValTyrSerSerGlyLeuGlyTyrArgMetL : 149 ...:!! !:!!.!! !|||! ! !:!!||||||.!!|||!!! !|||! !! !: SerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrV 284894 : TCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGG : 284953 150 : euLeuProIleLeuLysGlyLysIleValLeuProAsnAsnValThrIleArgLeuLe : 168 !!:!!|||:!:! !! !! !:::! ! !:!! !:!!|||! !|||:!:|||! !! alMetProLeuCysThrValArgThrGluIleIleAspAsnGluThrValArgSerGl 284954 : TGATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCA : 285010 169 : uProCysProThrTyrPheThrPhePheAsnGluLeuValSerProTyrTyrGluMet : 187 ! !!! !|||! !||| ! !.!!.!!:!! !! !..!||||||! !:!|||!!: nAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIle 285011 : AGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATC : 285067 188 : IlePheMetLeuGlnLeuLeuAlaGlyPhePheSerTyrThrValLeuAsnGlyThrV : 207 :!: .!.:!!|||! !||||||!.!||| !!! !|||:!!||| ! !|||.!! ValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaC 285068 : GTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTT : 285127 208 : alGlyIleSerLeuMetLeuSerLeuHisMetCysSerLeuLeuLysIleLeuThrAr : 226 !.!!:!::!! !:!!!!! !:!!|||:!:|||.!!! !!!!!:!||||||..!! ysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValTh 285128 : GCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGAC : 285184 227 : gLysMetAlaAsnLeuThrAsp : 233 !|||:!!! !!!.|||..!||| rLysLeuAspLysLeuValAsp 285185 : AAAGCTGGATAAGCTCGTCGAC : 285207 vulgar: AmOr5 18 233 . KQ414889.1 284547 285207 + 211 M 46 138 G 0 3 M 51 153 G 0 12 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284548 285207 211 + . gene_id 6 ; sequence AmOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284548 285207 . + . KQ414889.1 exonerate:protein2genome:local exon 284548 285207 . + . insertions 15 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284548 285207 211 + . alignment_id 6 ; Query AmOr5 ; Align 284548 19 138 ; Align 284689 65 153 ; Align 284854 116 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 203 Query range: 18 -> 260 Target range: 221402 -> 222134 19 : PheLeuLysIleValGlyValTrpProIleProIleGlySerProLeuSerSerLysI : 38 .!!|||||| :!!||||||||||||! ! !! !..!! ! !! ! !..!!:! IleLeuLysProIleGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgT 221403 : ATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGAT : 221460 39 : leArgAsnTrpPheIleThrPhePheSerLeuPheLeuGlnIleCysIleValGlyPr : 57 !! ! !!|||.!.|||!.! !! !!!!!! ! !||| ! ! !:!!:!!! !|| yrLeuTyrTrpLeuIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValPr 221461 : ACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACC : 221517 58 : oCysIleLeuValMetPheLeuLysGluLysAsnGlyLysArgLysIleAsnLeuPhe : 76 ||||! !||| !:!!.!!|||:!!! !:!!:!!! ! ! !.!!:!|||!!.|||!!. oCysSerLeuTyrValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeu 221518 : TTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTG : 221574 77 : LysLeuLeuThrAsnThrLeuAsnGlnLeuPheLysTyrIleIleThrLeuAsnArgA : 96 ! !|||!:! ! !:!!! !!!!.!.|||||| !:!: !:!! ! !! GlyProLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrG 221575 : GGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACG : 221634 97 : laAsnGluLeuAlaIleAlaMetAsnGluIleLysAsnAspTrpLeuThrAlaThr<- : 115 !|||!!::!! ! ..!!!:.!....|||:!! |||||| !!.! !||| luAsnAspIleArgGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTy 221635 : AGAACGACATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTA : 221691 116 : >SerGluAspArgTrpIlePheThrAlaAsnSerLysMetGlyGlnLysValMetLeu : 133 |||:!!|||!:! |||.!.! !! !|||:!!! .!.|||::!::!:!!!!::!! rSerLysAspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMet 221692 : CTCCAAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATG : 221748 134 : IleValAlaValThrValTyrSerSerGlyLeuGlyTyrArgMetLeuLeuProIleL : 153 ||| !.!! !! !:!!||||||... ::: ||| ::: !:!!|||.!! IleCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheS 221749 : ATCTGCACATTTTTCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTA : 221808 154 : euLysGlyLysIleValLeuProAsn<->AsnValThrIleArgLeuLeuProCysPr : 171 ! !||||||||| ! !! !:!! |||||||||... ! !:!! !! !|| erValGlyLysIleProAlaGlnAspValAsnValThrPheIleProMetValPhePr 221809 : GCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCC : 221865 172 : oThrTyrPheThrPhePheAsnGluLeuValSerProTyrTyrGluMetIlePheMet : 190 | !! !.!! !!:!! ! ! !|||||| !!|||!!::!:||| ! oPheSerArgPheIleValAspThrArgTyrSerProValAsnGluIleLeuPheSer 221866 : TTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCG : 221922 191 : LeuGlnLeuLeuAlaGlyPhePheSerTyrThrValLeuAsnGlyThrValGlyIleS : 210 ||||||:!!:!!|||||| !!!.! !:!!!:!:!! !:::!.!.!! !.!!:!: LeuGlnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuV 221923 : CTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGG : 221982 211 : erLeuMetLeuSerLeuHisMetCysSerLeuLeuLysIleLeuThrArgLysMetAl : 229 ! !|||!!!:!!:!!||| |||.!!! !:!!:!!:!:|||! !!!! !:!! alAlaMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLy 221983 : TTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAA : 222039 230 : aAsnLeuThrAspArgSerIleThrSerGluAsnIleIleGlnGluLysIleValGlu : 248 !:!!|||! !:!! !! !! !! ! |||! !:!:.!...!!:!|||!.!:!! sHisLeuIleAsnGlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLys 222040 : ACATTTGATCAACGGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAG : 222096 249 : IleValGluTyrGlnThrLysIleLysArgPheLeu : 260 ||||||.!. ! !!...!::!||| !!:!!:!:!! IleValAsnGlnHisValArgIleLeuGlnTyrVal 222097 : ATTGTGAATCAACACGTTCGAATATTGCAGTATGTA : 222134 vulgar: AmOr5 18 260 . KQ414889.1 221402 222134 + 203 M 96 288 G 0 3 M 47 141 G 0 3 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221403 222134 203 + . gene_id 7 ; sequence AmOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221403 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221403 222134 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221403 222134 203 + . alignment_id 7 ; Query AmOr5 ; Align 221403 19 288 ; Align 221694 115 141 ; Align 221838 162 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 202 Query range: 291 -> 395 Target range: 291368 -> 293245 292 : GluTrpGluAsnHisAsnIleAlaAlaIleValValHisPheMetLeuLeuGlyThrC : 311 |||||||||!:! !:!! !!.!|||:!!..!:!! !!! |||||| !:!!! GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 312 : ysIlePheIleIleTyrIleValCysTyrIleGlyGlnLeuLeuLeuAspGlu >>> : 329 !! !|||! !||| ||| !!||||||:!!|||:!!|||||||||! :!! heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln++ 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAGgt... : 291482 330 : > Target Intron 1 >>>> SerAsnAsnLeuAlaGlnGlnCysIleThrLeuS : 340 913 bp .!!!:!.!.:!!|||!!. ! ! ! ! !. ++GlySerGluIleAlaHisAlaSerTyrAspThrG 291483 : ......................agGGTAGTGAAATCGCGCACGCTTCCTACGATACAG : 292426 341 : erTrpTyrHisPheProThrArgLysAlaArgCysLeuIleLeuMetIleIleMetSe : 359 .!||||||:!!.!.|||! !|||||||||||| !:!!:!!|||:!!:!! !!!:!! luTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIleTh 292427 : AATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAAC : 292483 360 : rAsnTyrProValLysLeuThrAlaAlaLysValValAspValSerLeuThrThrPhe : 378 !!!.:!!|||:!!||||||||||||!.!|||:!! !!! !:!!||||||!.!|||||| rLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPhe 292484 : GAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTT : 292540 379 : ThrAsp >>>> Target Intron 2 >>>> ValMetLysAlaAlaMetGlyTy : 388 !! ! 652 bp |||:!!|||:!!:!!:!:! !|| GlyAla++ ++ValLeuLysSerSerValValTy 292541 : GGCGCTgt.........................agGTGCTGAAATCGTCGGTAGTTTA : 293222 389 : rLeuAsnMetLeuArgGluVal : 395 |:!!|||||||||||| ||| rMetAsnMetLeuArgThrVal 293223 : CATGAACATGCTACGAACCGTC : 293245 vulgar: AmOr5 291 395 . KQ414889.1 291368 293245 + 202 M 37 111 5 0 2 I 0 909 3 0 2 M 52 156 5 0 2 I 0 648 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 293245 202 + . gene_id 8 ; sequence AmOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292548 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292548 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 292549 292550 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 292549 293200 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 293199 293200 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 293201 293245 . + . KQ414889.1 exonerate:protein2genome:local exon 293201 293245 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 293245 202 + . alignment_id 8 ; Query AmOr5 ; Align 291369 292 111 ; Align 292393 329 156 ; Align 293201 381 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 195 Query range: 18 -> 256 Target range: 217198 -> 217918 19 : PheLeuLysIleValGlyValTrpProIleProIleGlySerProLeuSerSerLysI : 38 !!.|||||| :!!|||:!!||||||! ! !! ! !!!! !! !||| !!|||| LeuLeuLysProMetGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysI 217199 : TTGTTGAAACCGATGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAA : 217256 39 : leArgAsnTrpPheIleThrPhePheSerLeuPheLeuGlnIleCysIleValGlyPr : 57 ||! ! !! .!.|||!.! !!!.!!!! ! !||| !! !! !:!! !!! !|| leLeuTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValPr 217257 : TCCTCTACAAACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACC : 217313 58 : oCysIleLeuValMetPheLeuLysGluLysAsnGlyLysArgLysIleAsnLeuPhe : 76 |||| !:!! !:!!||||||:!!! :!!:!! ! ! !|||:!:!!.|||||| oCysSerMetTyrValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPhe 217314 : GTGCTCCATGTACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTC : 217370 77 : LysLeuLeuThrAsnThrLeuAsnGlnLeuPheLysTyrIleIleThrLeuAsnArgA : 96 ! !|||! ! ! !:!!! !!!! !!|||||| ! ! !:!! !!.! GlyProLeuIlePheCysValMetAlaPheValLysTyrTyrSerLeuIleValHisL 217371 : GGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACA : 217430 97 : laAsnGluLeuAlaIleAlaMetAsnGluIleLysAsnAspTrpLeuThrAlaThrSe : 115 ! !!::!! ! ..!:!!!....!|||:!!...|||||| !!.!!.!! !!! ysAlaAspIleArgGluCysValArgArgIleGluArgAspTrpArgAsnValArgCy 217431 : AGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATG : 217487 116 : rGlu<->AspArgTrpIlePheThrAlaAsnSerLysMetGlyGlnLysValMetLeu : 133 !||| |||||| ! .!.! !!.!|||:!!!!..!.|||!::|||:!!:!:||| sGluLysAspArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeu 217488 : CGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTA : 217544 134 : IleValAlaValThrValTyrSerSerGlyLeuGlyTyrArgMetLeuLeuProIleL : 153 :!! !.!! !! !:!!||||||... ::: ||| ::: !:!!|||||| LeuCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleS 217545 : CTCTGTACCTTCTTCATGTACAGCggtttcgttttttattacatCGCTATACCGATCA : 217604 154 : euLysGlyLysIleValLeuProAsn<->AsnValThrIleArgLeuLeuProCysPr : 171 ! !|||!:!|||:!!! ! !||| |||:!!|||.!!! !! !||| !! !|| erValGlyArgIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPhePr 217605 : GCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCC : 217661 172 : oThrTyrPheThrPhePheAsnGluLeuValSerProTyrTyrGluMetIlePheMet : 190 | ! !.!!.!!:!! ! ! !!!!||| !!|||!!::!:|||.!. oPheThrLysTyrIleIleAspThrArgTyrThrProThrAsnGluIleValPhePhe 217662 : TTTTACGAAGTATATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTC : 217718 191 : LeuGlnLeuLeuAlaGlyPhePheSerTyrThrValLeuAsnGlyThrValGlyIleS : 210 |||||||||:!!|||||| !!!.! !:!! !:!! !:::!.!.!! !.!!:!:: LeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuA 217719 : CTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGG : 217778 211 : erLeuMetLeuSerLeuHisMetCysSerLeuLeuLysIleLeuThrArgLysMetAl : 229 !! ! !!!:!!:!!||| |||.!!! !:!!:!!:!:|||! !!.! !:!! laAlaAlaPheAlaValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGl 217779 : CGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCA : 217835 230 : aAsnLeuThrAspArgSerIleThrSerGluAsnIleIleGlnGluLysIleValGlu : 248 !:!!|||! !||| !!!!! !! !...:!!! !:!:.!.! !:!|||!.!... nHisLeuIleAspGlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSer 217836 : ACATTTAATCGACGGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGC : 217892 249 : IleValGluTyrGlnThrLysIle : 256 ||||||... ! !!...!::!||| IleValSerGlnHisValArgIle 217893 : ATCGTCAGTCAACACGTTCGGATA : 217918 vulgar: AmOr5 18 256 . KQ414889.1 217198 217918 + 195 M 98 294 G 0 3 M 45 135 G 0 3 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217199 217918 195 + . gene_id 9 ; sequence AmOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217199 217918 . + . KQ414889.1 exonerate:protein2genome:local exon 217199 217918 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217199 217918 195 + . alignment_id 9 ; Query AmOr5 ; Align 217199 19 294 ; Align 217496 117 135 ; Align 217634 162 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 115 -> 258 Target range: 304446 -> 304869 116 : GluAspArgTrpIlePheThrAlaAsnSerLysMetGlyGlnLysValMetLeuIleV : 135 ..!|||||| !!:.!. ! ! !!.!!:!!||||||!:!!!.:!!! !:!!||| ArgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIleC 304447 : AGAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAATCT : 304504 136 : alAlaValThrValTyrSerSerGlyLeuGlyTyrArgMetLeuLeuProIleLeuLy : 154 !|||:!! !:!!|||!!!.!!||| ! !|||!.!! !:!!:!!! !.!! !! ysAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheAlaTh 304505 : GCGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCGAC : 304561 155 : sGlyLysIleValLeuProAsnAsnValThrIleArgLeuLeuProCysProThrTyr : 173 |||! ! !||| ! ! !!||| !||||||!:!! !||| !! !||||||||| rGlyThrTyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProThrTyr 304562 : CGGAACGTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACCTAC : 304618 174 : PheThrPhePheAsnGluLeuValSerProTyrTyrGluMetIlePheMetLeuGlnL : 193 !.!!!!.|||:!!! ! !..!|||||| !||||||:!!:!!!:!.!.:!!!!.! SerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheValHisC 304619 : AGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCATT : 304678 194 : euLeuAlaGlyPhePheSerTyrThrValLeuAsnGlyThrValGlyIleSerLeuMe : 212 !:!!..!|||!:! ! ! !|||:!!:!! ! !|||.!! !|||:!!:!! !:! ysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLe 304679 : GCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCT : 304735 213 : tLeuSerLeuHisMetCysSerLeuLeuLysIleLeuThrArgLysMetAlaAsnLeu : 231 :!!!:!! !||| |||.!!! !:!! ! |||:!!! ! !::!:!!!.!:!!||| uPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAspLeu 304736 : TTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGATCTT : 304792 232 : ThrAspArgSerIleThrSerGluAsnIleIleGlnGluLysIleValGluIleValG : 251 ..!:!!!!!!.! !:!!|||!!: :!!.!.:!!::!:!!:!!|||||||||| ValAsnSerLysGluSerSerAsp------LeuAspLysArgLeuIleGluIleValG 304793 : GTCAACAGCAAAGAATCATCTGAT------TTAGATAAACGATTAATAGAAATTGTTG : 304846 252 : luTyrGlnThrLysIleLysArg : 258 ||:!!!!. !::!||| !||| luHisHisLeuArgIleLeuArg 304847 : AGCATCATTTGCGAATTTTAAGG : 304869 vulgar: AmOr5 115 258 . KQ414889.1 304446 304869 + 180 M 124 372 G 2 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304447 304869 180 + . gene_id 10 ; sequence AmOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304447 304869 . + . KQ414889.1 exonerate:protein2genome:local exon 304447 304869 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 304447 304869 180 + . alignment_id 10 ; Query AmOr5 ; Align 304447 116 372 ; Align 304819 242 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 269 -> 391 Target range: 286812 -> 287252 270 : PheCysPheTyrAspIleGlyCysAsnMetCysLeuMetCysPheIleGlyTyrSerA : 289 !!.|||!:!||| !!! !! ! !!: ! !.!. !.!. !..!! |||! LeuCysTyrTyrHisThrValMetAlaIleIleAlaPheValMetTyrSerLeuSerV 286813 : TTGTGTTATTACCATACTGTAATGGCAATAATTGCATTCGTCATGTACTCGTTGTCAG : 286870 290 : laIleLeuGluTrpGluAsnHisAsnIleAlaAlaIleValValHisPheMetLeuLe : 308 .!.!!! !|||||||||.!. !.!.! ! !!.!! :!!..!:!!! !! !||||| alPhe***GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLe 286871 : TTTTCTAGGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCT : 286927 309 : uGlyThrCysIlePheIleIleTyrIleValCysTyrIleGlyGlnLeuLeuLeuAsp : 327 |! !:!!! !! |||! !:!!!:!|||:!!||||||||||||:!!:!!|||! !!!: uValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGlu 286928 : GGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAA : 286984 328 : Glu >>>> Target Intron 1 >>>> SerAsnAsnLeuAlaGlnGlnCysIl : 337 ::: 74 bp !! !!.:!!!.! !..! ! Gln++ ++CysLeuLysValGlyLeuSerThrTy 286985 : Caggt.........................agtGCTTAAAAGTCGGCTTGTCAACTTA : 287088 338 : eThrLeuSerTrpTyrHisPheProThrArgLysAlaArgCysLeuIleLeuMetIle : 356 !! !:!!..!||||||!.!!!.||| !!:!! !|||!:! !!|||||||||!!:.!! rMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePhe 287089 : CATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTC : 287145 357 : IleMetSerAsnTyrProValLysLeuThrAlaAlaLysValValAspValSerLeuT : 376 !:!!||||||! ! !!:!!||||||||||||!.!|||:!!:!!|||:!!||||||! AlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuS 287146 : GCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAA : 287205 377 : hrThrPheThrAspValMetLysAlaAlaMetGlyTyrLeuAsnMet : 391 :!!:!||| !..!|||! ! ! !:!:..!|||! !:!!:!! erSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 287206 : GCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 287252 vulgar: AmOr5 269 391 . KQ414889.1 286812 287252 + 164 M 59 177 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286813 287252 164 + . gene_id 11 ; sequence AmOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286813 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286813 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286813 287252 164 + . alignment_id 11 ; Query AmOr5 ; Align 286813 270 177 ; Align 287064 329 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 18 -> 286 Target range: 262873 -> 264630 19 : PheLeuLysIleValGlyValTrpProIleProIleGlySerProLeuSerSerLysI : 38 .!.|||||| :!!|||!.!||||||:!: !! !..!! ! !! !! !..!::!| LeuLeuLysProIleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgI 262874 : CTGCTGAAACCGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAA : 262931 39 : leArgAsnTrpPheIleThrPhePheSerLeuPheLeuGlnIleCysIleValGlyPr : 57 ||! ! !::.!!:!!! ! !! !!!!!! !! !||| !:!!! !! !||| !|| leIleTrpPheLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIlePr 262932 : TTATCTGGTTTCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCC : 262988 58 : oCysIleLeuValMetPheLeuLysGluLysAsnGlyLysArgLysIleAsnLeuPhe : 76 |! !|||||| !!!: !!|||:!!! :!!||| ! ! ! !|||:!:.!.:!!.!! oSerIleLeuHisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeu 262989 : TTCCATACTTCATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTC : 263045 77 : LysLeuLeuThrAsnThrLeuAsnGlnLeuPheLysTyrIleIleThrLeuAsnArgA : 96 ! !||| !.!. !!!! ! :!!.!!!!.|||! ! !||| !!.!: GlyProLeuGlyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisS 263046 : GGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACA : 263105 97 : laAsnGluLeuAlaIleAlaMetAsnGluIleLysAsnAspTrpLeuThrAlaThrSe : 115 :!!!.!!::!! ! !..!:!!.!..!.:!::!!.!.||||||! !! !!.!|||!! erLysAspIleGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrAr 263106 : GTAAAGATATACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAG : 263162 116 : r<->GluAspArgTrpIlePheThrAlaAsnSerLysMetGlyGlnLysValMetLeu : 133 ! ||||||!:! ! |||.!. ! !|||:!!||| |||!:: ! ||| ! gLeuGluAspGlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAla 263163 : GTTGGAGGATCAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCT : 263219 134 : IleValAlaValThrValTyrSerSerGlyLeuGlyTyrArgMetLeuLeuProIleL : 153 ! !|||:!! !:!! ! !!!||| !:!! !! ! !!:!::!! ! !!.!! SerCysAlaIlePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheT 263220 : TCTTGCGCGATCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCA : 263279 154 : euLysGlyLysIleValLeuProAsnAsnValThrIle<->ArgLeuLeuProCysPr : 171 !! ! ! !|||! ! ! !|||.!...!! !||| |||:!!||||||||||| hrThrGlnValIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysPr 263280 : CTACACAGGTGATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCC : 263336 172 : oThrTyrPheThrPhePheAsnGluLeuValSerProTyrTyrGluMetIlePheMet : 190 |..!||| !.!!.!! ! !..!!:!||| !!|||!!:.!!.!! oValTyrLysGluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAla 263337 : AGTGTACAAAGAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCC : 263393 191 : LeuGlnLeuLeuAlaGlyPhePheSerTyrThrValLeuAsnGlyThrValGlyIleS : 210 !|||!!!|||:!!||||||.!! ! !.!!..! ! !|||.!! !!|||!!:! ThrGlnPheLeuSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetT 263394 : ACGCAATTTCTGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGA : 263453 211 : erLeuMetLeuSerLeuHisMetCysSerLeuLeuLysIleLeuThrArgLysMetAl : 229 !! !:!!!!!:!! !||| |||.!!! !|||!!.:!:|||! ! ! !!!:.! hrAlaValPheAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleTh 263454 : CAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCAC : 263510 230 : aAsnLeuThrAspArgSer<->IleThrSerGluAsnIleIleGlnGluLysIleVal : 247 !.!.!!!..!:!!!:!||| ! !!:!:!!|||:!! ! :!!|||! ! rGluPheValAsnGlnSerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGly 263511 : GGAATTCGTGAACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGC : 263567 248 : GluIleValGluTyrGlnThrLysIleLys{Ar} >>>> Target Intron 1 > : 258 ! !|||||||||:!!!!. !!:!:!! !{||} 941 bp ValIleValGluHisHisLeuArgValLeu{Ar}++ 263568 : GTGATCGTTGAACATCATCTGAGAGTTCTG{AG}gt...................... : 263604 259 : >>> {g}PheLeuGlyAsnAlaGluLeuIleThrGluTyrPheCysPheTyrAspIl : 275 {|} ! ::: ::: :::||| !|||||| .!. -+{g}GluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSe 263605 : ...tg{G}GAAAGTCAtgatattcaaaatttgacTACATATTTCATGATACTGATATC : 264592 276 : eGlyCys<->AsnMetCysLeuMetCysPheIleGly : 286 ! !||| |||!!:! !|||||||||!:!|||||| rMetCysGlyAsnIlePheLeuMetCysTyrIleGly 264593 : AATGTGCGGCAACATTTTTCTAATGTGTTATATCGGC : 264630 vulgar: AmOr5 18 286 . KQ414889.1 262873 264630 + 154 M 97 291 G 0 3 M 50 150 G 0 3 M 70 210 G 0 3 M 22 66 S 0 2 5 0 2 I 0 937 3 0 2 S 1 1 M 19 57 G 0 3 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262874 264630 154 + . gene_id 12 ; sequence AmOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262874 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262874 263601 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 264542 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264541 264542 . + . intron_id 0 ; splice_site "TG" KQ414889.1 exonerate:protein2genome:local cds 264543 264630 . + . KQ414889.1 exonerate:protein2genome:local exon 264543 264630 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262874 264630 154 + . alignment_id 12 ; Query AmOr5 ; Align 262874 19 291 ; Align 263168 116 150 ; Align 263321 166 210 ; Align 263534 236 66 ; Align 264544 259 57 ; Align 264604 278 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 269 -> 391 Target range: 280025 -> 280465 270 : PheCysPheTyrAspIleGlyCysAsnMetCysLeuMetCysPheIleGlyTyrSerA : 289 !!.|||!:!!:! !!|||! ! ! ! !.!. !.!. !..!! |||! LeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerLeuSerV 280026 : TTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGTTGTCAG : 280083 290 : laIleLeuGluTrpGluAsnHisAsnIleAlaAlaIleValValHisPheMetLeuLe : 308 .!.!!! !|||||||||.!.:!!:!! ! !!.!! !!..!:!!!!.|||!!!|| alPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLe 280084 : TTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCT : 280140 309 : uGlyThrCysIlePheIleIleTyrIleValCysTyrIleGlyGlnLeuLeuLeuAsp : 327 | !:!!! ! |||! !:!!!:!|||:!!||||||||||||:!!:!!|||! !!!: uIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGlu 280141 : CATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAA : 280197 328 : GluSerAsnAsnLeuAlaGlnGlnCysIle{Th} >>>> Target Intron 1 > : 338 ::: ::::::... ! ! !{ } 74 bp GlnValPhePheIleSerSerThrIleTyr{**}-+ 280198 : CaggtatttttcatttcttcaacGATCTAT{TA}tt...................... : 280234 339 : >>> {r}LeuSerTrpTyrHisPheProThrArgLysAlaArgCysLeuIleLeuMe : 355 {!}:!!..!||||||!.!!!.||| !!:!||||||!:! !!|||||||||!! +-{*}IleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIl 280235 : ...at{G}ATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGAT : 280355 356 : tIleIleMetSerAsnTyrProValLysLeuThrAlaAlaLysValValAspValSer : 374 :.!! !:!!||||||! ! !!:!!||||||||||||!.!|||:!!:!!|||:!!||| ePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSer 280356 : ATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCT : 280412 375 : LeuThrThrPheThrAspValMetLysAlaAlaMetGlyTyrLeuAsnMet : 391 |||!:!!:!||| !..!|||! ! ! !:!:..!|||! !:!!:!! LeuSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280413 : TTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: AmOr5 269 391 . KQ414889.1 280025 280465 + 147 M 68 204 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280026 280465 147 + . gene_id 13 ; sequence AmOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280026 280231 . + . KQ414889.1 exonerate:protein2genome:local exon 280026 280231 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280232 280233 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 280232 280305 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280304 280305 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 280306 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280306 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280026 280465 147 + . alignment_id 13 ; Query AmOr5 ; Align 280026 270 204 ; Align 280307 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 326 -> 381 Target range: 301871 -> 302036 327 : AspGluSerAsnAsnLeuAlaGlnGlnCysIleThrLeuSerTrpTyrHisPheProT : 346 ||| !!!!!!:!.!.:!!!.!..! !! ! !:!!..!||||||:!!!!.|||. Asp***CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProA 301872 : GATTAGTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAG : 301929 347 : hrArgLysAlaArgCysLeuIleLeuMetIleIleMetSerAsnTyrProValLysLe : 365 !!!:!!:!||| ! !|||||||||:!:! !:!:!!:|||.!.|||||| !||||| laLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLe 301930 : CGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACT : 301986 366 : uThrAlaAlaLysValValAspValSerLeuThrThrPheThrAspVal : 381 |||||||!.!|||:!!:!!|||:!!||||||!.!||||||!:!..!||| uThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301987 : TACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: AmOr5 326 381 . KQ414889.1 301871 302036 + 123 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301872 302036 123 + . gene_id 14 ; sequence AmOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301872 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301872 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301872 302036 123 + . alignment_id 14 ; Query AmOr5 ; Align 301872 327 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 269 -> 333 Target range: 261667 -> 261859 270 : PheCysPheTyrAspIleGlyCysAsnMetCysLeuMetCysPheIleGlyTyrSerA : 289 |||! ! !|||..! !! !|||||| :!!!!:! !||| ::: PheTyrAspTyrSerTyrAspCysAsnCysValIleIlePhePhe***TyrPhePheL 261668 : TTTTACGATTACAGTTACGATTGCAATTGTGTAATAATCTTTTTctgatatttctttc : 261725 290 : laIleLeuGluTrpGluAsnHisAsnIleAlaAlaIleValValHisPheMetLeuLe : 308 ::: ||||||! .!.!!.:!!||| ! !:!: !..!:!!||||||:!!|| euLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheMetMetLe 261726 : ttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCATGATGCT : 261782 309 : uGlyThrCysIlePheIleIleTyrIleValCysTyrIleGlyGlnLeuLeuLeuAsp : 327 | !.!! ! !|||! !:!!!:!|||:!!||||||||||||:!!:!!||| !!!: uIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLeuThrGlu 261783 : GATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACTAACGGAA : 261839 328 : GluSerAsnAsnLeuAla : 333 :!! !.!.:!!|||||| GlnValGlnHisLeuAla 261840 : CAGGTACAACATTTGGca : 261859 vulgar: AmOr5 269 333 . KQ414889.1 261667 261859 + 109 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261668 261859 109 + . gene_id 15 ; sequence AmOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 261668 261859 . + . KQ414889.1 exonerate:protein2genome:local exon 261668 261859 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 261668 261859 109 + . alignment_id 15 ; Query AmOr5 ; Align 261668 270 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 329 -> 381 Target range: 219515 -> 219671 330 : AsnAsnLeuAlaGlnGlnCysIleThrLeuSerTrpTyrHisPheProThrArgLysA : 349 ......:::...:::... !! !:!!..!||||||!..!!. !! !!:!||| ArgLysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysL 219516 : aggaaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAA : 219573 350 : laArgCysLeuIleLeuMetIleIleMetSerAsnTyrProValLysLeuThrAlaAl : 368 !! !!! !:!!|||! ||| !|||||||||! ! !!:!!||||||||||||!. ysLeuTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGl 219574 : AGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGG : 219630 369 : aLysValValAspValSerLeuThrThrPheThrAspVal : 381 !!!.:!!|||!!::!!|||:!!!:!||||||||||||||| yAsnMetValGluLeuSerIleSerThrPheThrAspVal 219631 : AAATATGGTCGAATTGTCTATCAGCACTTTTACCGACGTG : 219671 vulgar: AmOr5 329 381 . KQ414889.1 219515 219671 + 101 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219516 219671 101 + . gene_id 16 ; sequence AmOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219516 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219516 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219516 219671 101 + . alignment_id 16 ; Query AmOr5 ; Align 219516 330 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 293 -> 404 Target range: 807254 -> 807587 294 : ValGlyTyrTyrIleLeuThrGluTrpAlaGluLysAsnValGlnAsnLeuThrThrT : 313 ..!|||!:! !.!!|||..!! !::! !|||:!! ! ! !! ! ThrGlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgS 807255 : ACAGGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGA : 807312 314 : yrPheMetMetLeuLeuSerIleCysPheAsnIlePheIleIleCysTyrIleGlyGl : 332 !|||:!::!!:!!:!!!!!:!: .!!.!.:!:!:!:!! !..!||| |||.! erPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807313 : GCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 333 : uIleLeuThrGluGlnCysMetLysIleGlyGluValValTyrMetThrAspTrpTyr : 351 .! !||| !..!!:! ! :!!|||!.!:!!!.!!.!||| :!! !|||||| nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 352 : TyrLeuProAspLysThrIleLeuAsnLeuIleLeuIleIleLeuArgSerThrValV : 371 !! !! !! ! .!! ! !:!!|||:!!|||||||||! !|||.!!!.! ! ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 372 : alValGlnIleThrAlaGlyLysLeuPheAsnMetSerIleTyrThrPheGlyAspVa : 390 ! !!::|||||||||||||||!!! !! |||!:!:!!!:!|||||| !!!::! roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 391 : lLeuLysThrAlaPheAlaTyrLeuAsnLeuLeuArgGlnMet : 404 !||||||.!!:!! !:!!||||||::!:!!:!!!:! !||| eLeuLysAlaSerGlySerTyrLeuSerValMetLysValMet 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: AmOr27 293 404 . KQ414940.1 807254 807587 + 142 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807255 807587 142 + . gene_id 1 ; sequence AmOr27 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807255 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807255 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807255 807587 142 + . alignment_id 1 ; Query AmOr27 ; Align 807255 294 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 318 -> 408 Target range: 807317 -> 807587 319 : IleValTyrAlaSerMetValPheAsnIlePheIlePheCysTyrIleAlaGluIleV : 338 :!!:!! !.!!!!:!!:!!.!!.!.:!:!:!:!!!:!..!||| !.!.!.! !: ValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrL 807318 : GTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACAC : 807375 339 : alThrGluGlnGlyLysLysValGlyGluLysPheTyrMetThrGluTrpTyrGlnLe : 357 !! !..!!:! !:!!:!!:!!!.!:!! !||| :!! ||||||!::! euGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCy 807376 : TCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTG : 807432 358 : uProHisLysThrAlaLeuGlyLeuValLeuIleIleSerArgSerSerMetValIle : 376 !! ! ! .!!||| !! !|||:!!||||||||| !|||.!!!:! ! ! ! sHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyr 807433 : CCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTAT : 807489 377 : LysIleThrAlaGlyLysLeuIleGlnIleSerIleAlaThrPheAlaAlaValPheL : 396 :::|||||||||||||||!!!:!!! !!!:!:!:!! !|||||| !! !:!!.!.| ArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuL 807490 : CGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGA : 807549 397 : ysAlaSerPheAlaTyrLeuAsnMetIleArgThrIle : 408 |||||||| !:!!||||||::!:!:!!:!:!..!!!: ysAlaSerGlySerTyrLeuSerValMetLysValMet 807550 : AAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: AmOr26 318 408 . KQ414940.1 807317 807587 + 129 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807318 807587 129 + . gene_id 1 ; sequence AmOr26 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807318 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807318 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807318 807587 129 + . alignment_id 1 ; Query AmOr26 ; Align 807318 319 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr13 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 279 -> 389 Target range: 807257 -> 807587 280 : GlyTyrCysLeuIleThrGluTrpGluAsnSerAsnAlaAlaAlaLeuIleValTyrP : 299 |||!:! !!!!:!:..!! !...!..!.!:!! !!.!||| !:!: ! !| GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 300 : heIleLeuGluPheLeuCysIlePheCysThrLeuThrIleCysTyrIleGlyGlnLe : 318 ||:!!||| ! ! !! :!:.!! !! ! ! !..!||| |||.!. heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 319 : uLeuIleAspGluSerAspLysValArgGlnIleSerValThrLeuAspTrpTyrArg : 337 !||| .....!!!!!!::!!:!! !||| !:!! ! !! ! !||||||||| rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 338 : LeuProValAsnGluAlaArgGlyLeuIleLeuValIleIleMetSerAsnTyrProI : 357 ! !! !! !:!!! !||||||! !|||:!!|||:!!||| ! .!!|||! ||| CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 358 : leLysValThrAlaGlyLysIleValAspIleSerLeuIleThrPheThrAspIleVa : 376 !::::!!||||||||||||.!!||| !!:!:!|||.!!||||||! !!!:|||:! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 377 : lLysThrSerValGlyTyrLeuAsnIleLeuArgThrVal : 389 !|||.!!|||! !..!||||||::!:!!:!!!:!..!:!! uLysAlaSerGlySerTyrLeuSerValMetLysValMet 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: AmOr13 279 389 . KQ414940.1 807257 807587 + 149 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807587 149 + . gene_id 1 ; sequence AmOr13 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807587 149 + . alignment_id 1 ; Query AmOr13 ; Align 807258 280 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 294 -> 402 Target range: 807257 -> 807581 295 : GlyTyrTyrIleLeuMetGluTrpSerAspTyrAspLysArgSerMetIleIleTyrP : 314 |||!:! !.!!|||:!:! !||| ! |||!!. !:!! :!:! !| GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 315 : heMetLeuPheValSerValCysPheAsnIlePheIleIleCysTyrIleGlyGluIl : 333 ||:!:|||.!.|||!!!:!! .!!.!.:!:!:!:!! !..!||| |||.!.! heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 334 : eLeuAlaGluGluSerMetLysValGlyGluValValTyrMetThrAspTrpTyrTyr : 352 !|||! !..!..!!!! :!!:!!!.!:!!!.!!.!||| :!! !|||||| ! rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 353 : LeuProAspLysThrIleLeuAspLeuThrLeuIleIleAlaArgSerSerValValV : 372 ! !! !! ! .!! ! !|||||| !||||||||| !|||.!!!:! ! ! CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 373 : alGlnIleThrAlaGlyLysLeuIleHisMetSerIleGlnThrPheThrAspValIl : 391 !!::|||||||||||||||!!!:!!! |||!:!:!! ||||||! !!!::!!:! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 392 : eLysThrGlyPheAlaTyrLeuAsnLeuLeuArg : 402 :|||.!!..! !:!!||||||::!:!!:!!!:! uLysAlaSerGlySerTyrLeuSerValMetLys 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: AmOr28PSE 294 402 . KQ414940.1 807257 807581 + 149 M 108 324 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807581 149 + . gene_id 1 ; sequence AmOr28PSE ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807581 149 + . alignment_id 1 ; Query AmOr28PSE ; Align 807258 295 324 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 279 Query range: 0 -> 147 Target range: 495 -> 57 1 : MetLysAsnGlnGlnValValIleThrGlnAspAspTyrLysArgLysThrAsnLeuSerIleG : 22 |||!..|||.!.:!!..!|||:!!|||:!! !:!! ! !!..!:!:!!! !|||:!!| MetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuG 495 : ATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCC : 432 23 : lnTrpAsnArgTrpLeuLeuThrProIleGlyAlaTrpProAsnLeuArgLysSerArgIleGl : 43 |||||||||||||| !:!!! ! !||||||.!!||||||.!.!!! ..!|||!.!:!!! lnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPhe---SerSerAsnLeuGl 431 : AGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTC---TCGTCGAACCTCGA : 372 44 : yLysCysTyrSerLeuLeuIleSerIleIleCysTyrSerLeuIleGlyPheMetLeuValSer : 64 !!:! ! !|||! !:!!:!!!:!:!:|||||||||!!! !||| !||| !:!!:!! !! uArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIlePro 371 : GAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCT : 309 65 : CysSerIlePheLeuMetValGluIleAsnAsnIleTyrAsnLysLeuLysMetValGlyProL : 86 ||||||:!: !||||||:!!|||! !...!.!.!!|||!..|||:!!|||!!::!!||||||| CysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyProL 308 : TGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGT : 243 87 : euSerPhePheValMetThrIleMetLysTyrTyrPheLeuLeuPheHisGluAsnAspIleAr : 107 ||||| !!::|||.!. !|||!!:!..||| !.!.||||||.!.!.....!!. !|||!. euSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHi 242 : TGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACA : 180 108 : gGluGlyIleGluArgIleGluTrpAspTrpLysAsnValLysHisGlnGluAspArgAsnIle : 128 !.!. !:!!.!.!.!!!:||| ||||||!:!!....! ...:::||| :::...::: sHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluVal 179 : TCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtc : 117 129 : MetIleThrTyrAlaAsnTyrGlyArgLysLeuAlaPheIleCysPhePhePheMet : 147 |||:!:! !||||||!!.!:!.!!||| ! !|||.!!.!!||| .!!|||!!: MetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIle 116 : ATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATA : 58 vulgar: AmOr29 0 147 . LHQN01027980.1 495 57 - 279 M 37 111 G 1 0 M 109 327 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 58 495 279 - . gene_id 1 ; sequence AmOr29 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 58 495 . - . LHQN01027980.1 exonerate:protein2genome:local exon 58 495 . - . insertions 0 ; deletions 1 LHQN01027980.1 exonerate:protein2genome:local similarity 58 495 279 - . alignment_id 1 ; Query AmOr29 ; Align 496 1 111 ; Align 385 39 327 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 163 Query range: 334 -> 399 Target range: 4381 -> 4097 335 : GlnThrGluLysValGlyGluValAlaTyrMetIleGluTrpTyrArgIleArgGlyLysLy : 355 ||| ! !|||||||||||||||!.!||||||! !!!:|||||| !:!:! ! !!:!!: GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 356 : sLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleLysPheThrAlaGlyA : 376 !! ||| !! :!!|||||||||.!! |||||| ! !:!!:!!.!!|||||||||. gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 377 : snMetValGluLeuSerIleTyrThrPheSerAsp >>>> Target Intron 1 >>>> : 388 ..::: ...:::|||:!!|||||||||.!!||| 89 bp ysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATgt......................... : 4220 389 : ValValLysThrSerValAlaPheLeuAsnMetLeu : 399 ||||||||||||.!! !!|||!:!|||||||||||| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeu 4219 : agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTT : 4098 vulgar: AmOr29 334 399 . LHQN01027980.1 4381 4097 - 163 M 53 159 5 0 2 I 0 85 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4098 4381 163 - . gene_id 2 ; sequence AmOr29 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4223 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4098 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4098 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4098 4381 163 - . alignment_id 2 ; Query AmOr29 ; Align 4382 335 159 ; Align 4134 388 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 394 Query range: 266 -> 405 Target range: 5518 -> 4085 267 : AsnPheIleSerCysIleGluGluThrIleAsnArgIleIlePheLeuGluValPheArgCy : 287 !:!||||||||| !!:!!|||! !! !!!:|||!:! !|||||||||:!!.!.||||| SerPheIleSerArgLeuGluAlaMetMetAsnLysAlaCysPheLeuGluLeuMetArgCy 5518 : AGCTTCATATCGCGCTTAGAGGCAATGATGAACAAAGCGTGTTTCCTGGAGTTAATGAGGTG : 5458 288 : sCysLeuHisIleCysCysLeuGlyTyrTyrIleLeuMet >>>> Target Intron 1 : 301 | :!! !||||||...:!!||||||||||||!!!||| 835 bp sThrMetAlaIleCysAlaIleGlyTyrTyrIlePheMet++ 5457 : CACGATGGCTATTTGCGCAATTGGATATTATATATTCATGgt.................... : 5414 302 : >>>> GluTrpSerAspTyrAspLysArgSerMetIleIleTyrPheMetLeuPheValS : 319 ||||||!!!!!: !||| !:!! !:!:.!!! |||.!!:!: !.!!|||: ++GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValA 5413 : .....agGAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTG : 4527 320 : erValCysPheAsnIlePheIleIleCysTyrIleGlyGluIleLeuAlaGluGlu >>>> : 338 !!||| ! ||| |||:::||||||||||||.!!!!:! |||.!!|||:!! laValValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4526 : CTGTTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt.... : 4468 339 : Target Intron 2 >>>> SerMetLysValGlyGluValValTyrMetThrAspTrp : 350 92 bp !!!:!!||||||||||||||||||||||||||||||||| ++CysLeuLysValGlyGluValValTyrMetThrAspTrp 4467 : .....................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGG : 4342 351 : TyrTyrLeuProAspLysThrIleLeuAspLeuThrLeuIleIleAlaArgSerSerValVa : 371 ||||||||||||.!.!:!! !||||||||||||! !|||||||||.!!||||||!:!||||| TyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValVa 4341 : TATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGT : 4279 372 : lValGlnIleThrAlaGlyLysLeuIleHisMetSerIleGlnThrPheThrAsp >>>> : 390 ||||:!!|||||||||||||||:::...|||||||||:!! ! |||||| !||| lValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4278 : CGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt..... : 4220 391 : Target Intron 3 >>>> ValIleLysThrGlyPheAlaTyrLeuAsnLeuLeuArgG : 403 89 bp |||:!!||||||||||||||||||||||||:!!||| !!| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysG 4219 : ....................agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTC : 4094 404 : lnValThr : 405 ||:!!:!! lnMetSer 4093 : AAATGTCC : 4086 vulgar: AmOr28PSE 266 405 . LHQN01027980.1 5518 4085 - 394 M 34 102 5 0 2 I 0 831 3 0 2 M 37 111 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4086 5518 394 - . gene_id 1 ; sequence AmOr28PSE ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 5417 5518 . - . LHQN01027980.1 exonerate:protein2genome:local exon 5417 5518 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 5415 5416 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4582 5416 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4582 4583 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4471 4581 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4581 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 2 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 2 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 1 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4223 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 3 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 3 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 2 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4086 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4086 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4086 5518 394 - . alignment_id 1 ; Query AmOr28PSE ; Align 5519 267 102 ; Align 4582 301 111 ; Align 4379 338 156 ; Align 4134 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 336 -> 381 Target range: 1990 -> 1855 337 : GluSerMetLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProAspLysTh : 357 |||!!!! |||||||||! ! !||||||||||||!!:|||||| ||| !!.!.||||| GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysTh 1990 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAAC : 1930 358 : rIleLeuAspLeuThrLeuIleIleAlaArgSerSerValValValGlnIleThrAlaGlyL : 378 | !|||! !!!!..!:!!||||||:!!|||||||||:!!|||:!!:!!||||||||||||| rAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyL 1929 : TGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAA : 1867 379 : ysLeuIleHis : 381 ||!!!:!!:!! ysPheValTyr 1866 : AATTCGTATAC : 1856 vulgar: AmOr28PSE 336 381 . LHQN01027980.1 1990 1855 - 132 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1856 1990 132 - . gene_id 2 ; sequence AmOr28PSE ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1856 1990 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1856 1990 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1856 1990 132 - . alignment_id 2 ; Query AmOr28PSE ; Align 1991 337 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 270 Query range: 11 -> 162 Target range: 477 -> 30 12 : IleGlnThrAsnHisAspTyrLysArgAsnValAsnLeuSerIleGlnTrpSerArgTrpIleL : 33 :!: |||.!. !:!! ! !!:! !:!!! !|||:!!||||||!:!|||||| : ValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaM 477 : GTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGA : 414 34 : euLysProIleGlyLeuTrpProAsnSerSerThrIleSerThrThrGlyLysTyrLeuTyrAr : 54 !!||| !|||||| !||||||.!.! !||| |||!.! !! !!:! !!:!!! !|| etLysSerIleGlyThrTrpProGlnPheSer------SerAsnLeuGluArgAsnIleSerAr 413 : TGAAAAGCATAGGCACATGGCCACAGTTCTCG------TCGAACCTCGAGAGAAACATCTCTCG : 357 55 : gLeuIleAsnValIleCysTyrSerLeuIleSerPheLeuSerIleProCysSerLeuTyrVal : 75 |:!!:!!|||||||||||||||!!! !||| !|||! !! !|||||||||||||||:!!:!! gIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeu 356 : AATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTA : 294 76 : IleLeuGluValGluAspIleTyrAsnArgIleLysLeuPheGlyProLeuSerPheCysValM : 97 !!:|||||| !! ! !.!!|||!..!:!:!:|||:!!.!!|||||||||||| !!! |||. MetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyProLeuSerHisTrpValP 293 : ATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGT : 228 98 : etAlaPheLeuLysTyrHisLeuLeuIleLeuHisLysAspAsnIleSerGluCysIleLysAr : 118 !...!.!!:!!!..||| !:!!|||:!:|||!..::: ! !.!||| !.!.! !:!!!!.!. heCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPheValAsnHi 227 : TCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTTTGTCAATCA : 165 119 : gIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspIleGluIleMetIleThrAsnAla : 139 !!!:||| ||||||!:!!..! ||| ...::: |||:::|||:!:! ! !!||| sMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAla 164 : TATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGCTGAAGTACGCA : 102 140 : AsnPheGlyArgArgLeuValIleIleCysThrPhePheMetTyrSerGlyPheAlaPheTyrT : 161 !!.|||.!!||| ! !!.!|||.!!|||.!!.!!|||!!::!!.!!|||.!. ! |||! LysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleLeuGlyTyrC 101 : AAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTATACTTGGATATT : 36 162 : yrIle : 162 !:!! ysVal 35 : GTGTT : 31 vulgar: AmOr22 11 162 . LHQN01027980.1 477 30 - 270 M 32 96 G 2 0 M 117 351 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 31 477 270 - . gene_id 1 ; sequence AmOr22 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 31 477 . - . LHQN01027980.1 exonerate:protein2genome:local exon 31 477 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 31 477 270 - . alignment_id 1 ; Query AmOr22 ; Align 478 12 96 ; Align 382 46 351 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 342 -> 399 Target range: 4381 -> 4210 343 : GlnCysLysLysIleGlyGluIleSerTyrMetValAspTrpTyrArgLeuGluGlyAsnLy : 363 |||||| !|||:!!||||||:!: !||||||..!||||||||| !||| ! !!..!: GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 364 : sLysLeuCysPheValLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyA : 384 !! ||| !!!.:!!|||||||||.!! |||||| ! !:!!:!!:!!|||||||||. gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 385 : snMetValGluLeuCysLeuThrThrPheSerAspIleValLysThr : 399 ..::: ...:::! ||| !||||||.!!|||:!! !:!!||| ysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThr 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 4211 vulgar: AmOr22 342 399 . LHQN01027980.1 4381 4210 - 135 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4211 4381 135 - . gene_id 2 ; sequence AmOr22 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4211 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4211 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4211 4381 135 - . alignment_id 2 ; Query AmOr22 ; Align 4382 343 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 334 -> 378 Target range: 1990 -> 1858 335 : GlnSerArgLysIleGlyGluValThrTyrMetIleGluTrpTyrArgLeuSerGlyLysLy : 355 :!!!!!! !|||:!!|||! ! !..!||||||! !|||||||||||||||||| !|||! GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysTh 1990 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAAC : 1930 356 : sLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerMetLysLeuThrAlaGlyA : 376 ||| !!! !|||:!!||||||:!!! |||!:!! ! !!!:|||:!!|||||||||! rAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyL 1929 : TGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAA : 1867 377 : snLeuIle : 378 !.!!!:!! ysPheVal 1866 : AATTCGTA : 1859 vulgar: AmOr21 334 378 . LHQN01027980.1 1990 1858 - 101 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1859 1990 101 - . gene_id 1 ; sequence AmOr21 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1859 1990 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1859 1990 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1859 1990 101 - . alignment_id 1 ; Query AmOr21 ; Align 1991 335 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 381 Query range: 2 -> 164 Target range: 486 -> 3 3 : AsnGlnThrAlaIleThrGlu<->GluIleLysThrAsnSerAspTyrSerLeuGlnLeuAsnA : 23 :!!:!!|||!.!:!!|||||| .!.|||! .!!!:!||||||||||||||||||! !|||| AspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnA 486 : GACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATC : 423 24 : rgTrpPheLeuLysProIleGlyAlaTrpProLeuPheSerThrThrThrLysPheGluLysTh : 44 ||||| :!!||| !||||||.!!||||||! !|||||| :!!!!..!!|||!:!!. rgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSer------SerAsnLeuGluArgAs 422 : GATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCG------TCGAACCTCGAGAGAAA : 366 45 : rValSerLeuIleLeuAsnIleIleCysTyrAlaIleValIleLeuCysAlaThrProSerLeu : 65 !:!!|||! !|||||||||:!:|||||||||.!! !:!!:!!!!!! !! !|||!!!! ! nIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSer 365 : CATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCG : 303 66 : MetGlnIleIleLeuAlaGluGluSerPheTyrLeuLysLeuLysThrLeuGlyProValSerH : 87 :!!!!.:!!!!:|||! !:!!! !!!!|||||| !|||:!!|||! !|||||||||:!!|||| LeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyProLeuSerH 302 : TTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCC : 237 88 : isTrpPheValSerThrValAsnTyrThrAlaLeuLeuMetLysSerLysAspIleArgTyrCy : 108 ||||| ! !!!!!! !:!!!:!|||||| !||||||:!!::! !!||| !|||!.!:!!! isTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPh 236 : ACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTT : 174 109 : sPheGluHisMetGluAlaAspTrpGlnThrIleLysArgMetGluAspGlnGlnThrMetLeu : 129 ! !!.!.|||||||||.!!||||||::!|||! ||| ||| ::::::...|||||| eValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeu 173 : TGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGCTG : 111 130 : LysAsnAlaLysPheGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnGlyGlyIleL : 151 ||| !!|||||||||.!!||||||!.!||| !! !||||||||||||!!:!!.|||||||||| LysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleL 110 : AAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTATAC : 45 152 : euCysPheCysPheValThrIleLeuThrThrGluThrIle : 164 || ! !:!||| !!:!!||| ! !|||||| !..!:!! euGlyTyrCysValMetThrAlaSerThrThrMetValVal 44 : TTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTC : 4 vulgar: AmOr27 2 164 . LHQN01027980.1 486 3 - 381 M 7 21 G 0 3 M 27 81 G 2 0 M 126 378 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4 486 381 - . gene_id 1 ; sequence AmOr27 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4 486 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4 486 . - . insertions 3 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 4 486 381 - . alignment_id 1 ; Query AmOr27 ; Align 487 3 21 ; Align 463 10 81 ; Align 382 39 378 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 348 Query range: 300 -> 405 Target range: 4581 -> 4085 301 : GluTrpAlaGluLysAsnValGlnAsnLeuThrThrTyrPheMetMetLeuLeuSerIleCy : 321 ||||||.!!|||!..:!!!.!|||! ||| !||||||.!!:!:! |||:!!:!!:!! GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValVa 4581 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTGT : 4521 322 : sPheAsnIlePheIleIleCysTyrIleGlyGluIleLeuThrGluGln >>>> Target : 338 ! ||| |||:::||||||||||||.!!!!:! |||||||||||| 9 lSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4520 : TtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt........... : 4468 339 : Intron 1 >>>> CysMetLysIleGlyGluValValTyrMetThrAspTrpTyrTyrL : 353 2 bp |||:!!|||:!!|||||||||||||||||||||||||||||||||| ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrL 4467 : ..............agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATC : 4333 354 : euProAspLysThrIleLeuAsnLeuIleLeuIleIleLeuArgSerThrValValValGln : 373 |||||.!.!:!! !||||||:!!||||||||||||||| !||||||!.!|||||||||:!! euProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGlu 4332 : TGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAA : 4273 374 : IleThrAlaGlyLysLeuPheAsnMetSerIleTyrThrPheGlyAsp >>>> Target : 390 |||||||||||||||:::|||:::||||||:!!||||||||||||||| 89 IleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4272 : ATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt............ : 4220 391 : Intron 2 >>>> ValLeuLysThrAlaPheAlaTyrLeuAsnLeuLeuArgGlnMetTh : 405 bp |||:!!||||||!.!|||||||||||||||:!!||| !!||||||:! ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMetSe 4219 : .............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAAATGTC : 4088 406 : r : 405 ! r 4087 : C : 4086 vulgar: AmOr27 300 405 . LHQN01027980.1 4581 4085 - 348 M 37 111 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4086 4581 348 - . gene_id 2 ; sequence AmOr27 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4581 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4581 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4223 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 2 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 2 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 1 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4086 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4086 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4086 4581 348 - . alignment_id 2 ; Query AmOr27 ; Align 4582 301 111 ; Align 4379 338 156 ; Align 4134 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 339 -> 390 Target range: 1981 -> 1822 340 : LysIleGlyGluValValTyrMetThrAspTrpTyrTyrLeuProAspLysThrIleLeuAs : 360 |||:!!|||! ! !||||||||||||!!:|||||| ||| !!.!.|||||| !|||.. LysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGl 1981 : AAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGG : 1921 361 : nLeuIleLeuIleIleLeuArgSerThrValValValGlnIleThrAlaGlyLysLeuPhe< : 381 !!!!:!!:!!||||||! !||||||!:!:!!|||:!!:!!|||||||||||||||!!! ! yPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheValT 1920 : TTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTAT : 1858 382 : -><->AsnMetSerIleTyrThrPheGlyAspVal : 390 !.. !|||:!! ||||||||||||||| yr***ThrSerSerValAlaThrPheGlyAspVal 1857 : ACTGAACATCGTCTGTCGCAACATTTGGCGATGTG : 1823 vulgar: AmOr27 339 390 . LHQN01027980.1 1981 1822 - 123 M 41 123 G 0 6 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1823 1981 123 - . gene_id 3 ; sequence AmOr27 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1823 1981 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1823 1981 . - . insertions 6 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1823 1981 123 - . alignment_id 3 ; Query AmOr27 ; Align 1982 340 123 ; Align 1853 381 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 218 Query range: 343 -> 410 Target range: 1981 -> 1703 344 : LysValGlyGluLysPheTyrMetThrGluTrpTyrGlnLeuProHisLysThrAlaLeuGl : 364 |||||||||! !||| ! ||||||||||||||||||!:!||| !!!!.|||||||||||||| LysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGl 1981 : AAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGG : 1921 365 : yLeuValLeuIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysLeuIle< : 385 |!!!|||:!!|||||||||||||||||||||||||||||||||||||||||||||!!!:!! yPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheValT 1920 : TTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTAT : 1858 386 : -><->GlnIleSerIleAlaThrPheAlaAla >>>> Target Intron 1 >>>> V : 394 ! |||:!!|||||||||!.!! ! 71 bp | yr***ThrSerSerValAlaThrPheGlyAsp++ ++V 1857 : ACTGAACATCGTCTGTCGCAACATTTGGCGATgt.........................agG : 1754 395 : alPheLysAlaSerPheAlaTyrLeuAsnMetIleArgThrIleAlaMet : 410 |||||||||||||||||||||||!!!|||||||||||||||:!!|||||| alPheLysAlaSerPheAlaTyrPheAsnMetIleArgThrValAlaMet 1753 : TATTTAAAGCGTCTTTCGCCTACTTCAACATGATCCGCACAGTTGCAATG : 1704 vulgar: AmOr26 343 410 . LHQN01027980.1 1981 1703 - 218 M 41 123 G 0 6 M 9 27 5 0 2 I 0 67 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1704 1981 218 - . gene_id 1 ; sequence AmOr26 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 1826 1981 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1826 1981 . - . insertions 6 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 1824 1825 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 1755 1825 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 1755 1756 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 1704 1754 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1704 1754 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1704 1981 218 - . alignment_id 1 ; Query AmOr26 ; Align 1982 344 123 ; Align 1853 385 27 ; Align 1755 394 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 184 Query range: 340 -> 405 Target range: 4381 -> 4097 341 : GlnGlyLysLysValGlyGluLysPheTyrMetThrGluTrpTyrGlnLeuProHisLysTh : 361 ||| !! !|||||||||||| ! !!|||||||||!!:|||||| ! ||||||!!.!:!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 362 : rAlaLeuGlyLeuValLeuIleIleSerArgSerSerMetValIleLysIleThrAlaGlyL : 382 ! !|||! !|||:!!|||||||||!!!||||||!:!:!!|||:!!:!!||||||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 383 : ysLeuIleGlnIleSerIleAlaThrPheAlaAla >>>> Target Intron 1 >>>> : 394 ||:::......:::|||:!! !||||||!.!! ! 89 bp ysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATgt......................... : 4220 395 : ValPheLysAlaSerPheAlaTyrLeuAsnMetIle : 405 ||| ! |||.!!.!!||||||||||||||||||:!! ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeu 4219 : agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTT : 4098 vulgar: AmOr26 340 405 . LHQN01027980.1 4381 4097 - 184 M 53 159 5 0 2 I 0 85 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4098 4381 184 - . gene_id 2 ; sequence AmOr26 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4223 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4098 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4098 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4098 4381 184 - . alignment_id 2 ; Query AmOr26 ; Align 4382 341 159 ; Align 4134 394 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr14 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 341 -> 388 Target range: 4345 -> 4204 342 : AspTrpTyrArgPheProValLysGluAlaArgAsnLeuIleLeuValIleIleMetSerSe : 362 ||||||||| !.!.||| !!:!..! !! !:!!|||||||||:!!|||! ! |||!: AspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAs 4345 : GATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAA : 4285 363 : rTyrProValLysLeuThrAlaGlyLysValValAspIleSerLeuAlaThrPheThrAspI : 383 ! !|||:!!:!!||||||||||||::: :::|||||| !|||||| !|||: nValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspV 4284 : CGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATG : 4222 384 : leIleLysThrThrVal : 388 !!! !:!!|||!.!:!! alSerGluThrAsnLeu 4221 : TAAGTGAAACTAATCTT : 4205 vulgar: AmOr14 341 388 . LHQN01027980.1 4345 4204 - 104 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4205 4345 104 - . gene_id 1 ; sequence AmOr14 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4205 4345 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4205 4345 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4205 4345 104 - . alignment_id 1 ; Query AmOr14 ; Align 4346 342 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr13 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 324 -> 380 Target range: 4372 -> 4204 325 : LysValArgGlnIleSerValThrLeuAspTrpTyrArgLeuProValAsnGluAlaArgGl : 345 |||||| !!:!!:!: ! !! ! !||||||||| !|||||| !!....! !! !! LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAs 4372 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGA : 4312 346 : yLeuIleLeuValIleIleMetSerAsnTyrProIleLysValThrAlaGlyLysIleValA : 366 !|||||||||:!!|||! ! |||||| !:!!:!!:!!||||||||||||||| pLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLysIlePheH 4311 : TTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaaaatattcc : 4249 367 : spIleSerLeuIleThrPheThrAspIleValLysThrSerVal : 380 :::|||||| !|||||| !|||:!! !:!!|||!:!:!! isMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeu 4248 : atatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTT : 4205 vulgar: AmOr13 324 380 . LHQN01027980.1 4372 4204 - 119 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4205 4372 119 - . gene_id 1 ; sequence AmOr13 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4205 4372 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4205 4372 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4205 4372 119 - . alignment_id 1 ; Query AmOr13 ; Align 4373 325 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 239 Query range: 15 -> 171 Target range: 462 -> 0 16 : AsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuArgThrIleGlyT : 37 ||| ! !..! !..!!:!!:!:!!!:!! !||| !|||.!!:!!!:!!:!||||||| AsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyT 462 : AATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCA : 399 38 : hrTrpProArgSerProAspHisSerTrpLeuGluThrLeuGluHisValCysLeuAsnLeuPh : 58 ||||||||!:!! ! !!...:!! ||||||! ! ! ! ! ||||||:!!.! hrTrpProGlnPheSerSerAsn------LeuGluArgAsnIleSerArgIleLeuAsnValIl 398 : CATGGCCACAGTTCTCGTCGAAC------CTCGAGAGAAACATCTCTCGAATATTAAACGTGAT : 342 59 : eCysTyrGluLeuLeuAlaPheIleLeuIleProCysSerIleTyrIleIleLeuGluIleLys : 79 !|||||| !:!! !||| :!!||||||||||||:!::!!:!!!!:||||||! ! ! eCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGly 341 : CTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGG : 279 80 : AspPheTyrAsnGlnLeuLysLeuGlySerAlaLeuSerPhePheLeuMetAlaValMetLysT : 101 !||||||!..:!!:!!|||:!! !.!! !!|||||| !!:::!!.!...!:!!!!:!..| ThrPheTyrThrLysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerT 278 : ACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTT : 213 102 : yrCysValPheIleIleArgGluAspAspIleArgLysCysValGluLeuIleGluAsnAspTr : 122 || !:!!.!.:!::!:|||... ! !|||!.! ! ! !|||.!.! !!!:|||!.!||||| yrThrMetLeuLeuLeuArgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTr 212 : ACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTG : 150 123 : pLysAsnValArgTyrGlnGluAspArgLysIleMetLeuGluAsnAlaSerPheSerArgArg : 143 |!:!!....! :::||| :::::::::||||||:!! !!|||!.!||||||||| ! pArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyr 149 : GAGAACGACGacgagaaaggagaagaaagaagtcATGCTGAAGTACGCAAAATTTAGTCGATAC : 87 144 : LeuIleValIleCysGlyThrPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProL : 165 ! :!!.!!|||!.!! !|||!!::!!||||||:!!:!! |||! !:!! ! ! !!! AlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaS 86 : GCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGT : 21 166 : euThrArgAlaLysIleVal : 171 !|||! ! ! :!!||| erThrThrMetValValVal 20 : CCACCACGATGGTTGTCGTG : 1 vulgar: AmOr18 15 171 . LHQN01027980.1 462 0 - 239 M 29 87 G 2 0 M 125 375 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1 462 239 - . gene_id 1 ; sequence AmOr18 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1 462 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1 462 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 1 462 239 - . alignment_id 1 ; Query AmOr18 ; Align 463 16 87 ; Align 376 47 375 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr13 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 156 Query range: 4 -> 224 Target range: 1070 -> 410 5 : TyrSerLeuLysLeuValTyrProLeuLeuLysIleLeuGlyAlaTrpProLysSerSerPr : 25 |||||||||:!!! ! ! ! !:!!|||! !:!!||||||||||||:!!||| TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSer----- 1070 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCC----- : 1013 26 : oSerSerValLeuSerThrIleLeuLysCysCysLeuIleSerIleCysTyrLeuIleGlnL : 46 |||||| !|||..!! !|||:!!... ! |||! ! !||||||||| ! ! !| -SerSerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValL 1012 : -TCGTCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTAC : 953 47 : euMetValLeuIleProGlyIleLeuTyrIlePheLeuLysGluAlaAsnLeuGlyGlyLys : 66 ||.!...!:!!|||||| !! |||:!!:!!.!.|||:!!:!!! !!.!!!! ! !||| euPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLys 952 : TATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAA : 893 67 : IleLysMetPheValProHisMetAsnGlyIleThrGlnValSerLysTyrThrIleLeuLe : 87 :!:|||!!:.!!! !||| ! :!! !!:!: ! :!!! !!..||||||!!:||||| ValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLe 892 : GTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTT : 830 88 : uArgGlnIleLysGluPheAsnIleIleLeuLysGluValLysArgAspTyrSerLeuAlaT : 108 |! !!:! !||| .!...! !.!!!!!!!..!.:!!:!!! !|||!::!!! !.!!! uLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrM 829 : GCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGA : 767 109 : hrAspLys<->AsnMetTrpIlePheThrThrArgAlaTyrIleGlyHisLysMetMetIle : 127 ||| ... |||... !! ! !||| ! .!!.!!!.. ! ! !||| etArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIle 766 : tgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATT : 707 128 : AlaIleAlaIleAlaMetTyrSerSerGlyValGlyTyrArgMetIleLeuProPheLeuLy : 148 :!! !.!!||| !!!::!!.!!.!! !:!!|||||| !!:!:!!: ! !!||| !! SerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrTh 706 : TCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCAC : 644 149 : sGlyArgIleLeuLeuProAspAsnThrThrVal<->ArgLeuLeuProCysProGlyTyrT : 168 ! ! !:!!:!!:!! !:!!.!.|||! !:!! |||:!!||||||! ||| !||| rMetValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrL 643 : GATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACA : 581 169 : yrMetPheLeuAsnGluGlnValThrProAsnTyrGluIleIlePheThrIleGlnValLeu : 188 ! !.!!||| ! .!...!!.! !!! !!||||||:!!.!! ! !||| !!||| ysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeu 580 : AAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTC : 521 189 : GlyGlyPheLeuAsnTyrThrThrLeuCysGlyThrThrGlyIleThrThrMetLeuCysLe : 209 ..!||||||:!! !!|||!:! ! !.!!..!! !.!!:!!|||!:! ||| ! SerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSe 520 : TCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATC : 458 210 : uHisMetCysSerLeuLeuGluIleLeuIleAsnLysMetAsnAsp : 224 !||| !! !.!!! !|||! :!::!!!!: ..!!!:.!.||| rHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAsp 457 : ACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGAT : 411 vulgar: AmOr13 4 224 . LHQN01028641.1 1070 410 - 156 M 19 57 G 2 0 M 85 255 G 0 3 M 49 147 G 0 3 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 411 1070 156 - . gene_id 1 ; sequence AmOr13 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 411 1070 . - . LHQN01028641.1 exonerate:protein2genome:local exon 411 1070 . - . insertions 6 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local similarity 411 1070 156 - . alignment_id 1 ; Query AmOr13 ; Align 1071 5 57 ; Align 1014 26 255 ; Align 756 111 147 ; Align 606 160 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 417 Query range: 0 -> 298 Target range: 1124 -> 156 1 : MetLysAsnGlnGlnValValIleThrGlnAspAspTyrLysArgLysThrAsnLeuSerIl : 21 |||!..|||.!.:!!..!|||:!!|||:!! !:!! ! !!..!:!:!!! !|||:! MetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLe 1124 : ATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCT : 1064 22 : eGlnTrpAsnArgTrpLeuLeuThrProIleGlyAlaTrpProAsnLeuArgLysSerArgI : 42 !||||||||||||||| !:!!! ! !|||||||||||||||.!. !..!|||!.!: uGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGln---SerSerSerAsnL 1063 : CCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAG---TCCTCGTCGAATC : 1004 43 : leGlyLysCysTyrSerLeuLeuIleSerIleIleCysTyrSerLeuIleGlyPheMetLeu : 62 !!! !!:! ! !|||! !:!!:!:!:!:!:|||||||||!!! !:!! !|||! !:!! euGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIle 1003 : TCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATA : 944 63 : ValSerCysSerIlePheLeuMetValGluIleAsnAsnIleTyrAsnLysLeuLysMetVa : 83 :!! !!||||||:!: !:!!|||:!!|||! !.!.!.!.!!|||!..|||:!!|||!!::! IleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIleLe 943 : ATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACT : 881 84 : lGlyProLeuSerPhePheValMetThrIleMetLysTyrTyrPheLeuLeuPheHisGluA : 104 !|||||||||||| !!::|||.!. !|||!!:!..||| !.!.||||||.!.!.....! uGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgL 880 : CGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTA : 818 105 : snAspIleArgGluGlyIleGluArgIleGluTrpAspTrpLysAsnValLysHisGlnGlu : 124 !. !||||||.!. !.!!.!.!.!!!:||| ||||||!:!!....!! ...:::||| ysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGlu 817 : AAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggag : 758 125 : AspArgAsnIleMetIleThrTyrAlaAsnTyrGlyArgLysLeuAlaPheIleCysPhePh : 145 :::...||||||:!:! !||||||!!.!:!.!!||| ! !|||.!! !||| .! LysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIl 757 : aagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGAT : 695 146 : ePheMetLeuCysAlaPheIlePheTyrPheLeuIleGlnProPheGlyGlyGlyLysIleV : 166 !|||!!:! ! !!!.!.!.:!! |||! !:!!!!: ! !!||| ! ! ! :!!| ePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValV 694 : CTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCG : 632 167 : alAspGlyAsnLeuThrPheIle<-><->GlnLeuProPheProIleSerIleLeuIleAla : 184 ||! !|||||| !|||.!.||| !||||||!!.|||!!:! !! ! !:!! ! alValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeu 631 : TGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTT : 572 185 : AspValArgAspSerProTyrAsnGluIleMetLeuSerIleGlnIleLeuThrGlyIleVa : 205 ||| ! !:! !! |||||||||:!:|||! ! !|||.!!|||:!!|||.!!:! ProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIl 571 : CCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTAT : 509 206 : lMetAsnAlaIleArgSerAlaIleCysSerValAlaAlaValPheAlaIleHisAlaCysG : 226 ! !|||.!!! ! !! !::!:!! |||:!!.!!::!!.!.!..!! !||||||! !| eAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerG 508 : AGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTG : 446 227 : lyGlnMetGlnValLeuMetAsnTrpLeuAsnHisLeuValGluGlyArgSerAspMetSer : 246 |||||:!! |||:!!||| ! !:!!.!. !!!!!|||...! ! !!!! !! .!! lyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArgGly 445 : GCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGG : 386 247 : LysLysIleAsp<->AspArgIleAlaAsnIleValIleGlnHisAspArgIleLeu{Ly} : 265 ||| ! ! !! |||..!||| !!!..|||||| :!!||| |||:!:|||{!!} LysAspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeu{As}+ 385 : AAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG{AA}g : 324 266 : >>>> Target Intron 1 >>>> {s}PheLeuAlaLeuThrGluArgAlaLeuGlnG : 276 68 bp {.}|||:!!:!!! !! !||| ! !:!!.!.: + ++{n}PheIleSerArgIleGluAlaMetIleAsnL 323 : t.........................ag{C}TTCATATCGCGCATAGAGGCAATGATAAACA : 225 277 : lnIleSerPheValGluPheLeuGlyCysThrAlaAsnMetCysLeuLeuGlyTyrTyrLeu : 296 !! !!!|||:!!|||!!. ! !!|||||| ! !!!:|||:!!||||||||||||:!! ysAlaCysPheLeuGluLeuThrArgCysThrIleAlaIleCysValLeuGlyTyrTyrIle 224 : AAGCGTGTTTCCTGGAGTTAACGAGGTGCACGATAGCTATATGCGTACTTGGATATTATATA : 165 297 : IleVal : 298 .!!:!! PheMet 164 : TTCATG : 157 vulgar: AmOr29 0 298 . LHQN01028641.1 1124 156 - 417 M 36 108 G 1 0 M 136 408 G 0 6 M 77 231 G 0 3 M 14 42 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 157 1124 417 - . gene_id 1 ; sequence AmOr29 ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1124 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1124 . - . insertions 9 ; deletions 1 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 157 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 157 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 157 1124 417 - . alignment_id 1 ; Query AmOr29 ; Align 1125 1 108 ; Align 1017 38 408 ; Align 603 174 231 ; Align 369 251 42 ; Align 256 266 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 737 Query range: 2 -> 298 Target range: 1115 -> 162 3 : AsnGlnThrAlaIleThrGlu<->GluIleLysThrAsnSerAspTyrSerLeuGlnLeuAs : 22 :!!:!!|||!.!:!!|||||| .!.|||! .!!!:!||||||||||||||||||! !|| AspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAs 1115 : GACAAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTGGAA : 1055 23 : nArgTrpPheLeuLysProIleGlyAlaTrpProLeuPheSerThrThrThrLysPheGluL : 43 ||||||| :!!||| !||||||||||||||| ..!:!!:!!:!!!!..!!|||! nArgTrpAlaMetLysSerIleGlyAlaTrpPro------GlnSerSerSerAsnLeuGluA 1054 : TCGATGGGCGATGAAAAGCATAGGCGCATGGCCA------CAGTCCTCGTCGAATCTCGAGA : 998 44 : ysThrValSerLeuIleLeuAsnIleIleCysTyrAlaIleValIleLeuCysAlaThrPro : 63 :!! !:!!|||! !|||||||||:!:|||||||||.!! !|||:!!!!! !! !||| rgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIlePro 997 : GAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATCCCT : 938 64 : SerLeuMetGlnIleIleLeuAlaGluGluSerPheTyrLeuLysLeuLysThrLeuGlyPr : 84 !!!! !:!!!!.:!!!!:|||! !:!!|||!!!|||||| !|||:!!|||! !|||||||| CysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGlyPr 937 : TGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGGTCC : 875 85 : oValSerHisTrpPheValSerThrValAsnTyrThrAlaLeuLeuMetLysSerLysAspI : 105 |:!!||||||||| ! !!!!!! !:!!!:!|||||| !||||||:!!::! !!||| !| oLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrI 874 : GTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCA : 812 106 : leArgTyrCysPheGluHisMetGluAlaAspTrpGlnThrIleLysArgMetGluAspGln : 125 |||||:!!! !|||.!.|||||||||.!!||||||::!|||! ! ||| ||| ::: leArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLysLys 811 : TACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaagaaa : 752 126 : GlnThrMetLeuLysAsnAlaLysPheGlyArgTyrValAlaAlaSerCysAlaIlePheMe : 146 ::: ||||||||| !!|||||||||.!!||||||!.!||| !||||||.!!||||||!! GluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIl 751 : gaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCAT : 689 147 : tGlnGlyGlyIleLeuCysPheCysPheValThrIleLeuThrThrGluThrIleGlnValG : 167 :!!.|||||||||||| ! !:!||| !!:!!||| !!!|||||| !..!:!! !|||| eHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValValG 688 : ACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTG : 626 168 : lyAsnGluThrArgValLeuHisValLeuProCysAlaValTyrLysLysLeuValAsnVal : 187 |||||||||||! !:!!|||!.!|||||||||! !!:!!|||||| !|||:!! ||| lyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProVal 625 : GAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTC : 566 188 : GluGluAsnSerIleAsnIlePheMetLeuCysPheGlnPheValAlaAlaAlaIleAlaAs : 208 !!: !|||!!!!!:||| .!!:!:|||! ! ||||||:!!:!!!.! !|||||||| AspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAs 565 : GATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAA : 503 209 : nSerSerThrValGlyIlePheSerLeuAlaAlaValLeuAlaAlaHisAlaTyrGlyGlnL : 229 |!!!|||.!!:!!.!!:!!.!.||||||.!!::!!.!|||.!!:!!||||||! !||||||| nThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnL 502 : CACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGT : 440 230 : euSerValValMetValTrpIleThrGluPheValAsnGlnSerArgAsnGlnLysLysThr : 249 ||.!!|||||||||:!!! !||| !!!:||||||!:!.!.:!!|||..!::! !||| ! euGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLysAsp 439 : TGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAGGAC : 380 250 : AspAspPheLysGluIleGlyIleIleValGluArgHisLeuArgValLeu{As} >>>> : 267 ||| !!||| ! |||||| !! !|||||||||!:!|||||||||||||||{||} AspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeu{As}++ 379 : GATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG{AA}gt..... : 322 268 : Target Intron 1 >>>> {n}PheIleThrTyrLeuGluAsnIleMetAsnArgIleT : 280 68 bp {|}||||||:!! !:!!||| !!:!!:|||!:! ! ++{n}PheIleSerArgIleGluAlaMetIleAsnLysAlaC 321 : ....................ag{C}TTCATATCGCGCATAGAGGCAATGATAAACAAAGCGT : 219 281 : yrPheLeuGluLeuPheArgCysThrMetIleIleCysIleValGlyTyrTyrIle : 298 !|||||||||||| |||||||||!!: !||||||:!!:!!|||||||||||| ysPheLeuGluLeuThrArgCysThrIleAlaIleCysValLeuGlyTyrTyrIle 218 : GTTTCCTGGAGTTAACGAGGTGCACGATAGCTATATGCGTACTTGGATATTATATA : 163 vulgar: AmOr27 2 298 . LHQN01028641.1 1115 162 - 737 M 7 21 G 0 3 M 24 72 G 2 0 M 231 693 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 163 1115 737 - . gene_id 1 ; sequence AmOr27 ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1115 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1115 . - . insertions 3 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 163 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 163 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 163 1115 737 - . alignment_id 1 ; Query AmOr27 ; Align 1116 3 21 ; Align 1092 10 72 ; Align 1020 36 693 ; Align 256 268 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 411 Query range: 11 -> 304 Target range: 1106 -> 162 12 : IleGlnThrAsnHisAspTyrLysArgAsnValAsnLeuSerIleGlnTrpSerArgTrpIl : 32 :!: |||.!. !:!! ! !!:! !:!!! !|||:!!||||||!:!|||||| ValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAl 1106 : GTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGC : 1046 33 : eLeuLysProIleGlyLeuTrpProAsnSerSerThrIleSerThrThrGlyLysTyrLeuT : 53 :!!||| !|||||| !||||||.!.|||||| |||!.! !! !!:! !:!!! aMetLysSerIleGlyAlaTrpProGlnSerSer------SerAsnLeuGluArgIleIleS 1045 : GATGAAAAGCATAGGCGCATGGCCACAGTCCTCG------TCGAATCTCGAGAGAATCATCT : 989 54 : yrArgLeuIleAsnValIleCysTyrSerLeuIleSerPheLeuSerIleProCysSerLeu : 73 !|||:!!:!:|||||||||||||||!!! !:!! !||| !! !||||||||||||||| erArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIleProCysSerLeu 988 : CTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATCCCTTGTTCGCTG : 929 74 : TyrValIleLeuGluValGluAspIleTyrAsnArgIleLysLeuPheGlyProLeuSerPh : 94 :!!|||!!:|||||| !||| !.!!|||!..!:!:!:|||:!!.!!|||||||||||| HisValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGlyProLeuSerHi 928 : CACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCA : 866 95 : eCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuHisLysAspAsnIleSerGluC : 115 !!! |||.!...!.!!:!!!..||| !:!!|||:!:|||!..::: ! !.!||| !!.!.! sTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisP 865 : CTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACT : 803 116 : ysIleLysArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspIleGluIleMet : 135 !.!!!!.!.!!!:||| ||||||!:!!..! ! ...::: ||||||||| hePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLysLysGluIleMet 802 : TTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaagaaagaaataatg : 743 136 : IleThrAsnAlaAsnPheGlyArgArgLeuValIleIleCysThrPhePheMetTyrSerGl : 156 :!:! ! !!|||!!.|||.!!||| ! !!.!||| !||||||.!!|||!!::!!.!!|| LeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGl 742 : cTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGG : 680 157 : yPheAlaPheTyrTyrIleAlaValProIleSerValGlyLysIleLeuAlaGluAspAspA : 177 |.!. ! |||! !:!! !..! !!.!!!!!..! ! :!!:!!!.!! !:!!!!:! yIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValValGlyAsnGluT 679 : TATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTGGAAACGAGA : 617 178 : snIleThrPheIleProLeuValPheProPheSerArgPheIleIleAspThrArgTyrSer : 197 .!!!:! !!!. ! !||| !!!.|||.!.! !!:! :!!:!! ..! ! !:! hrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsn 616 : CTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAAT : 557 198 : PheIleAsnGluIleValPheSerIleGlnLeuIleAlaGlyAlaLeuMetHisThrIleTh : 218 !!!:||||||||||||.!!! ! !|||!!!:!!:!!||| !:!! !:!!|||! !.! ThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAsnThrSerAl 556 : ACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAACACCAGTGC : 494 219 : rThrAlaAlaCysSerLeuAlaAlaIlePheAlaValHisAlaCysGlyGlnMetGlnValL : 239 !! !::!!.! ||||||.!!::! !.!..!! !||||||! !||||||:!! |||: aIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuGlyValV 493 : GATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGGGCGTGG : 431 240 : euSerAsnTrpLeuLysHisLeuIle<->AsnGlyArgSerAspMetTyrAsnAsnValAsp : 258 !!! ! ! !:!!:!! !!!!!:!: :!!!.!||| !! ! ! :!!:!! ! ! alMetLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLysAspAspHisPhe 430 : TTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAGGACGATCATTTC : 371 259 : SerArgIleAlaSerIleValSerGlnHisValArgIleLeu{Ly} >>>> Target In : 273 ..!..!||| !!!!!||||||..!:!!|||:!!|||:!:|||{!!} 68 b AspGluIleProThrIleValGluLysHisLeuArgValLeu{As}++ 370 : GACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG{AA}gt.............. : 322 274 : tron 1 >>>> {s}PheLeuAlaLeuThrGluLysAlaLeuGlnGlnValSerPheValG : 289 p {.}|||:!!:!!! !! !||| ! !:!!.!.:!!!.!!!!|||:!!| ++{n}PheIleSerArgIleGluAlaMetIleAsnLysAlaCysPheLeuG 321 : ...........ag{C}TTCATATCGCGCATAGAGGCAATGATAAACAAAGCGTGTTTCCTGG : 210 290 : luPheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrVal : 304 ||!!. ! !!|||! !:!! !||||||:!!||||||||||||:!! luLeuThrArgCysThrIleAlaIleCysValLeuGlyTyrTyrIle 209 : AGTTAACGAGGTGCACGATAGCTATATGCGTACTTGGATATTATATA : 163 vulgar: AmOr22 11 304 . LHQN01028641.1 1106 162 - 411 M 32 96 G 2 0 M 202 606 G 0 3 M 25 75 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 163 1106 411 - . gene_id 1 ; sequence AmOr22 ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1106 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1106 . - . insertions 3 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 163 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 163 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 163 1106 411 - . alignment_id 1 ; Query AmOr22 ; Align 1107 12 96 ; Align 1011 46 606 ; Align 402 248 75 ; Align 256 274 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 295 Query range: 1 -> 294 Target range: 1112 -> 168 2 : SerSerValLysIleAspGlnAspTyrLysSerAsnValAsnLeuSerIleLysTyrSerAr : 22 !.!!!!||| ! !!!: :!! ! :!!!:! !:!!! !|||:!!:!!!::!:!|| LysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnAr 1112 : AAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTGGAATCG : 1052 23 : gArgIleSerLysMetIleGlyLeuTrpProIlePheAspLysIleSerThrIleHisLysP : 43 | !! ! !|||! |||||| !|||||| .!.... |||!.!:!!.!.!:!. gTrpAlaMetLysSerIleGlyAlaTrpPro------GlnSerSerSerAsnLeuGluArgI 1051 : ATGGGCGATGAAAAGCATAGGCGCATGGCCA------CAGTCCTCGTCGAATCTCGAGAGAA : 995 44 : heLeuArgMetLeuTyrAsnThrIleCysTyrCysLeuLeuMetPheMetIleValLeuGly : 63 !!:!! ! :!!! |||..!||||||||| ! !:!!:!:|||! !|||:!!! ! !! leIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIleProCys 994 : TCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATCCCTTGT : 935 64 : TrpMetTyrIleAlaPheGluValLysAsnIleTyrAspGlyLeuLysPheValSerLeuMe : 84 ! !:!!:!!:!! !.!.||| !:!!!.!.!!||| !:!!|||.!.:!!.!!! !:! SerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGlyProLe 934 : TCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTT : 872 85 : tSerPheCysMetLeuSerIleThrLysTyrHisLeuIleAsnIleHisLysAspAspValA : 105 !||| !!! :!!!!!!!!|||! !!..||| !:!!:!: :!:!..::: ! !:!!| uSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleA 871 : GAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATAC : 809 106 : rgGluCysValLysArgIleGluTrpAspTrpLysAsnIleSerTyrSerGluAspArgGlu : 125 ||.!.! ! !!!!.!.!!!:||| ||||||!:!!..! ! ...||| :::||| rgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLysLysGlu 808 : GTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaagaaagaa : 749 126 : IleMetLeuMetAsnAlaAsnPheGlyLysArgLeuIleIleValThrThrThrValThrTy : 146 |||||||||! ! !!|||!!.|||.!!::! ! ! ||| ! !|||! ! !!! !:! IleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHi 748 : ataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACA : 686 147 : rSerGlyPheValPhePheTyrIleAlaIleProMetLysIleGlyLysIleProAlaProA : 167 !.!!|||.!.:!! !:!! !:!! !! ! !!.!.! ! ! :!! !!.! !: sGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValValGlyA 685 : CGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTGGAA : 623 168 : spAlaAsnIleSerPheIleProThrMetPheProPheProLysTyrIleAlaAspValArg : 187 !!! !!.!!!:! !!!. ! ! ! !!!.|||.!. !||| :!! ! ||| ! snGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAsp 622 : ACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTCGAT : 563 188 : TyrSerProIleAsnGluIleValPhePhePheGlnPheMetCysGlyPheLeuValHisGl : 208 !:! !!!!:||||||||||||.!!!!.! ||||||:!:! !||||||:!!!.!:!! ThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAsnTh 562 : ACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAACAC : 500 209 : yValThrSerSerAlaCysSerLeuAlaAlaIlePheThrValHisAlaCysGlyGlnIleG : 229 ! !.!!! !|||!.! ||||||.!!::! !.!.||| !||||||! !||||||:!: rSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuG 499 : CAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGG : 437 230 : lnValMetMetIleTrpLeuGluHisLeuIle<->GluGlyArgLeuAspMetCysTyrSer : 248 |||:!:|||:!:! !:!!||| !!!!!:!: !!:!.!|||! ! ! !!..! lyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLysAspAsp 436 : GCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAGGACGAT : 377 249 : ValAspGlnArgIleAlaLysIleValSerGlnHisValArgIleLeu{Ly} >>>> Tar : 265 ! !.!...!||| !!! !||||||..!:!!|||:!!|||:!:|||{!!} HisPheAspGluIleProThrIleValGluLysHisLeuArgValLeu{As}++ 376 : CATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG{AA}gt........ : 322 266 : get Intron 1 >>>> {s}PheLeuSerLeuIleGluLysIleLeuGlnGlnValSerT : 279 68 bp {.}|||:!!|||! !|||||| !!!::!!.!.:!!!.!!!!! ++{n}PheIleSerArgIleGluAlaMetIleAsnLysAlaCysP 321 : .................ag{C}TTCATATCGCGCATAGAGGCAATGATAAACAAAGCGTGTT : 216 280 : yrMetGluPheLeuGluCysThrValAsnValCysLeuLeuGlyTyr : 294 :!:!!|||!!. !..!||||||:!! !:!!|||:!!||||||||| heLeuGluLeuThrArgCysThrIleAlaIleCysValLeuGlyTyr 215 : TCCTGGAGTTAACGAGGTGCACGATAGCTATATGCGTACTTGGATAT : 169 vulgar: AmOr21 1 294 . LHQN01028641.1 1112 168 - 295 M 31 93 G 2 0 M 205 615 G 0 3 M 25 75 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 169 1112 295 - . gene_id 1 ; sequence AmOr21 ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1112 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1112 . - . insertions 3 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 169 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 169 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 169 1112 295 - . alignment_id 1 ; Query AmOr21 ; Align 1113 2 93 ; Align 1020 35 615 ; Align 402 240 75 ; Align 256 266 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr11 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 161 Query range: 22 -> 289 Target range: 1040 -> 156 23 : ArgThrLeuGlyTyrTrpProLeuValSerProSerAlaPheThrLysPhePheAsnSerPh : 43 !:!!:!:!!||| |||||| !||| !!||| !.!! !!:!.!!.!!::! !!.! LysSerIleGlyAlaTrpPro---GlnSerSerSerAsnLeuGluArgIleIleSerArgIl 1040 : AAAAGCATAGGCGCATGGCCA---CAGTCCTCGTCGAATCTCGAGAGAATCATCTCTCGAAT : 983 44 : eThrIlePheThrLeuTyrPheLeuGluLeuIleValLeuIleProGlyLeuLeuTyrValL : 64 . !! ! ! ! !! !||| ! !! !|||.!!..!:!!|||||| !!! !|||:!!|||: eLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIleProCysSerLeuHisValM 982 : ATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATCCCTTGTTCGCTGCACGTAA : 920 65 : euGlnValLysAsnPro<->ArgThrLysIleLysLeuLeuMetProHisLeuAsnSerIle : 83 !!! !! !|||.!. !! !||||||:!:|||:!!||| ||| !:!!!!!:!: etLeuGluLysGluThrPheTyrThrLysValLysIleLeuGlyProLeuSerHisTrpVal 919 : TGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTG : 860 84 : AlaGlnMetAlaLysTyrThrIleIleLeuGlnArgAlaLysGluPheSerLysLeuLeuAs : 104 ! !!: !!..||||||!!::!:|||! !||| !||| .!. !! ! !!!!!!:! PheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAs 859 : TTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAA : 797 105 : pGluIleLysLysAspTrp<->LeuLeuAlaThrGluGluAsnArgGlnIlePheSerGluA : 124 !.!.!!::!!! |||||| ! ! :::|||...::::::|||... !:!! nHisMetGluThrAspTrpArgThrThrMetArgLysGluLysLysGluIleMetLeuLysT 796 : TCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaagaaagaaataatgcTGAAGT : 734 125 : rgAlaSerIleGluHisLysLeuThrThrValIleValValThrMetTyrGlyGlyGlyPhe : 144 !|||!.!.!!...!.. ! !.!!! ! ! !..!:!! !!!::!!|||||| !.!! yrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeu 733 : ACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTT : 674 145 : PheTyrArgThrIleLeuProLeuSerLysGlyLysIleLeuLeuProAsn<->AsnMetTh : 164 ||| !!..!!!: ! !!!!!!!!! ! ! :!!:!!:!! !||| !.!|||! GlyTyrCysValMetThrAlaPheThrThrMetValValValValGlyAsnGluThrMetIl 673 : GGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTGGAAACGAGACTATGAT : 611 165 : rValArgLeuLeuProCysProSerTyrPheGlySerLeuAsnGluGlnAlaThrProAsnT : 185 !:!!|||:!!||||||! |||! !||| ||| !||| ! .!..!!!.! !!! eLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetA 610 : CTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGA : 548 186 : yrGluIleIlePheThrLeuGlnValLeuGlyGlyPheIleIleTyrThrValLeuCysGly : 205 !!||||||:!!.!! !! !||| !!|||..!||||||||| !!||| ! ! !.!! snGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAsnThrSerAlaIleSer 547 : ACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAACACCAGTGCGATCAGT : 488 206 : ThrLysSerAlaCysLeuMetLeuCysLeuHisMetCysGlyLeuLeuLysIleLeuThrAs : 226 ..!! !||| ! ! ||| ! !||| !! !|||! !||| :!::!!! ! ValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuGlyValValMetLe 487 : GTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTT : 425 227 : nLysValMetAspLeuThrAsnAspSerAspGluGlnValValGln<-><-><->GluLysI : 244 ..!:!! |||!!!..!!:!|||:!! ...::!! ! !.!. !!::!!| uSerIleGluAspPheValSerAspAlaArgArgArgGlyLysAspAspHisPheAspGluI 424 : GTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAGGACGATCATTTCGACGAAA : 362 245 : leValHisIleValGluTyrGlnThrArgIleLys{Gl} >>>> Target Intron 1 : 256 || ! ||||||||| ! !!. !|||:!: !{.!} 68 bp leProThrIleValGluLysHisLeuArgValLeu{As}++ 361 : TACCGACAATCGTGGAGAAACATTTGAGAGTGTTG{AA}gt..................... : 322 257 : >>>> {u}PheLeuAsnGlnLeuAspGlnPheValProAlaIleTyrLeuIleGluValVa : 274 {.}|||:!!:::!:::!!!!: !.!.:!! ! ! ! !!!!:!:|||:!!.. ++{n}PheIleSerArgIleGluAlaMetIleAsnLysAlaCysPheLeuGluLeuTh 321 : ....ag{C}TTCATATCGCGCATAGAGGCAATGATAAACAAAGCGTGTTTCCTGGAGTTAAC : 204 275 : lIleGlnValLeuIleIleCysIleIleGlyTyrCysIleIleMet : 289 !! ..!:!! !||||||:!!:!!||||||! !|||.!!||| rArgCysThrIleAlaIleCysValLeuGlyTyrTyrIlePheMet 203 : GAGGTGCACGATAGCTATATGCGTACTTGGATATTATATATTCATG : 157 vulgar: AmOr11 22 289 . LHQN01028641.1 1040 156 - 161 M 7 21 G 1 0 M 39 117 G 0 3 M 41 123 G 0 3 M 51 153 G 0 3 M 80 240 G 0 9 M 14 42 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 157 1040 161 - . gene_id 1 ; sequence AmOr11 ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1040 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1040 . - . insertions 18 ; deletions 1 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 157 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 157 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 157 1040 161 - . alignment_id 1 ; Query AmOr11 ; Align 1041 23 21 ; Align 1020 31 117 ; Align 900 70 123 ; Align 774 111 153 ; Align 618 162 240 ; Align 369 242 42 ; Align 256 257 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 687 Query range: 1 -> 300 Target range: 1118 -> 156 2 : SerAsnArgSerValAlaIleLysThrAspProAspThrAsnSerAspTyrCysLeuGlnLe : 22 !:!:!!!:!!!!|||!.!! !:!!! !:!! ! !.!!!:!||||||||| !!||||||! AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTr 1118 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTG : 1058 23 : uAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerPheProSerThrThrLysHisG : 43 !||||||||| :!!||| !|||||||||||||||..! |||:!!:!!!!.! !| pAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGln------SerSerSerAsnLeuG 1057 : GAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAG------TCCTCGTCGAATCTCG : 1001 44 : luArgIleIleSerPheLeuLeuAsnValSerCysTyrSerSerLeuLeuPheThrLeuIle : 63 |||||||||||||| :!!|||||||||! !||||||!!!:!!:!!|||||||||:!!||| luArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIle 1000 : AGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATC : 941 64 : ProCysLeuLeuHisMetLeuLeuGluAspGluSerPheTyrLeuLysMetLysValLeuGl : 84 ||||||! !||||||:!::!!|||||| ! |||!!!|||||| !|||:!!|||:!!||||| ProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGl 940 : CCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGG : 878 85 : ySerLeuAlaHisTrpPheValGlyThrMetAsnTyrThrThrLeuLeuLeuArgGlyLysG : 105 | !!|||::!|||||| ! !! !!! !!!:!:!||||||! !|||||||||||| !!||| yProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysT 877 : TCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAA : 815 106 : luIleArgLeuCysValGluHisIleArgThrAspTrpGlnThrValThrArgGluGluAsp : 125 ||||||! !! ! !!.!.|||!!:..!|||||||||::!|||..!! |||:::||| hrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLys 814 : CCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaag : 755 126 : GlnGlnValMetLeuLysAsnAlaLysPheGlyArgTyrValAlaAlaValSerAlaAlaIl : 146 :::::::::||||||||| !!|||||||||.!!||||||!.!||| ! !!!!.!! !.! LysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePh 754 : aaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTT : 692 147 : eLeuGlnSerGlyValAsnCysUnkCysCysMetThrIleSerArgThrGluLeuIleGlnI : 167 !:!!!!..!!|||:!! ! ! ||| !|||||| ! !! !||| !:!!:!! !: eIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValV 691 : CATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGG : 629 168 : leGlyAsnGluThrArgIleValHisValLeuProCysAlaValTyrArgLysLeuIleAsp : 187 !!||||||||||||! !|||:!!!.!|||||||||! !!:!!|||!:! !|||:!! alGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuPro 628 : TTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCA : 569 188 : ValThrHisSerProAsnSerGluLeuIleIleAlaSerGlnPheLeuSerGlyPheIleVa : 208 ||| ! !:! !!! !:!|||:!!:!!:!! !||||||||||||||||||||||||!. ValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAl 568 : GTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGC : 506 209 : lAsnSerSerThrAlaGlyIlePheSerLeuAlaAlaIleLeuGlyAlaHisAlaCysGlyG : 229 !|||!!!|||.!! !.!!:!!.!.||||||.!!::! !||| !:!!||||||! !|||| aAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyG 505 : GAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCC : 443 230 : lnLeuSerValValMetThrTrpIleThrGluPheValAsnLysSerLysLysArgGluLys : 249 |||||.!!||||||||| !! !||| !!!:||||||!:! ! :!!!:!:::|||! !||| lnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLys 442 : AGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAG : 383 250 : <->MetIlePheArgGluIleGlyLeuIleValGluHisHisLeuArgThrLeu{As} >> : 267 !||| !|||||| ! !||||||||| ! |||||||||..!|||{||} AspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeu{As}++ 382 : GACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG{AA}gt.. : 322 268 : >> Target Intron 1 >>>> {n}PheIleSerCysIleGluGluThrIleAsnArgI : 279 68 bp {|}||||||||| !!||||||! !! !||||||!:! ++{n}PheIleSerArgIleGluAlaMetIleAsnLysA 321 : .......................ag{C}TTCATATCGCGCATAGAGGCAATGATAAACAAAG : 222 280 : leIlePheLeuGluValPheArgCysCysLeuHisIleCysCysLeuGlyTyrTyrIleLeu : 299 !|||||||||:!! |||||| :!! !|||||| |||||||||||||||!!! laCysPheLeuGluLeuThrArgCysThrIleAlaIleCysValLeuGlyTyrTyrIlePhe 221 : CGTGTTTCCTGGAGTTAACGAGGTGCACGATAGCTATATGCGTACTTGGATATTATATATTC : 162 300 : Met : 300 ||| Met 161 : ATG : 157 vulgar: AmOr28PSE 1 300 . LHQN01028641.1 1118 156 - 687 M 34 102 G 2 0 M 212 636 G 0 3 M 17 51 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 157 1118 687 - . gene_id 1 ; sequence AmOr28PSE ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1118 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1118 . - . insertions 3 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 157 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 157 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 157 1118 687 - . alignment_id 1 ; Query AmOr28PSE ; Align 1119 2 102 ; Align 1017 38 636 ; Align 378 250 51 ; Align 256 268 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 370 Query range: 15 -> 281 Target range: 1091 -> 296 16 : AsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuArgThrIleGl : 36 ||| ! !..! !..!!:!!:!:!!!:!! !||| !|||.!!:!!!:!!:!||||| AsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGl 1091 : AATATAACTGCTAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGG : 1031 37 : yThrTrpProArgSerProAspHisSerTrpLeuGluThrLeuGluHisValCysLeuAsnL : 57 |.!!||||||!:!||| !!...:!! ||||||! !:!! ! ! ||||||: yAlaTrpProGlnSerSerSerAsn------LeuGluArgIleIleSerArgIleLeuAsnV 1030 : CGCATGGCCACAGTCCTCGTCGAAT------CTCGAGAGAATCATCTCTCGAATATTGAACG : 974 58 : euPheCysTyrGluLeuLeuAlaPheIleLeuIleProCysSerIleTyrIleIleLeuGlu : 77 !!.!!|||||| !:!! !|||! :!!||||||||||||:!::!!:!!!!:|||||| alIleCysTyrThrAlaValLeuPheThrIleIleProCysSerLeuHisValMetLeuGlu 973 : TGATCTGCTACACCGCAGTACTATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAA : 914 78 : IleLysAspPheTyrAsnGlnLeuLysLeuGlySerAlaLeuSerPhePheLeuMetAlaVa : 98 ! !:!! !||||||!..:!!:!!|||:!! !.!! !!|||||| !!:::!!.!...!:! LysGluThrPheTyrThrLysValLysIleLeuGlyProLeuSerHisTrpValPheCysIl 913 : AAAGAGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTAT : 851 99 : lMetLysTyrCysValPheIleIleArgGluAspAspIleArgLysCysValGluLeuIleG : 119 !!!:!..||| !:!!.!.:!::!:|||... ! !|||||| ! ! ! !!.!.! !!!:| eIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetG 850 : CATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGG : 788 120 : luAsnAspTrpLysAsnValArgTyrGlnGluAspArgLysIleMetLeuGluAsnAlaSer : 139 ||!.!||||||!:!!....!! :::||| ::::::|||||||||:!! !!|||!.! luThrAspTrpArgThrThrMetArgLysGluLysLysGluIleMetLeuLysTyrAlaLys 787 : AGACCGATTGGAGAACGACGAtgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAA : 728 140 : PheSerArgArgLeuIleValIleCysGlyThrPheMetTyrGlyGlyValIlePheTyrTy : 160 ||||||||| ! ! :!! !||| !! !|||!!::!!||||||:!!:!! |||! PheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCy 727 : TTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTG : 665 161 : rIleAlaLeuProLeuThrArgAlaLysIleValGluGluGlyGlyAsnLeuThrTyrArgA : 181 !:!! ! ! !!!!!|||! ! ! :!!|||! ! !..!! !!.!:!!! !! ||| sValMetThrAlaPheThrThrMetValValValValGlyAsnGluThrMetIleLeuArgV 664 : TGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCG : 602 182 : rgLeuValTyrProPheProLysValLeuLeuAspAlaArgHisSerProIleAsnGluIle : 201 !||| !! |||.!. !|||! !|||||| !.! ! !:! !!!!:||||||||| alLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnGluIle 601 : TGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATC : 542 202 : CysTyrThrIleGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValAlaAlaCysGl : 222 ! ! ! !|||!!!||||||||||||:!!|||:!!!.!! !.!!:!!::!!.! .! ValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSe 541 : GTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAG : 479 223 : yLeuAlaAlaLeuLeuAlaIleHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpLeuG : 243 !|||.!!::! !|||.!! !||||||! !||||||||| :!::!!|||! !! !:!!| rLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleG 478 : CCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCG : 416 244 : luLysLeuVal<->AspGlyArgLysAsnAspAsnGluAsnLeuAspGlnArgLeuAlaAsn : 262 || ! !!!||| |||!.!|||:::!..! !!.!!::!!! ! !.!...!:!! !!!.. luAspPheValSerAspAlaArgArgArgGlyLysAspAspHisPheAspGluIleProThr 415 : AAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACA : 356 263 : IleValLysGlnHisValArgIleIleAsnPheIleAlaLeuThrGluAspLeuLeu : 281 ||||||:!!:!!|||:!!|||:!::!:!!.! :!!..!||| !!!: :!!||| IleValGluLysHisLeuArgValLeuLys***ValCysLeuLeuAspLeuIleLeu 355 : ATCGTGGAGAAACATTTGAGAGTGTTGAAGTAAGTATGTTTGTTGGATTTGATTTTG : 297 vulgar: AmOr18 15 281 . LHQN01028641.1 1091 296 - 370 M 29 87 G 2 0 M 200 600 G 0 3 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 297 1091 370 - . gene_id 1 ; sequence AmOr18 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 297 1091 . - . LHQN01028641.1 exonerate:protein2genome:local exon 297 1091 . - . insertions 3 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local similarity 297 1091 370 - . alignment_id 1 ; Query AmOr18 ; Align 1092 16 87 ; Align 1005 47 600 ; Align 402 247 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 494 Query range: 0 -> 285 Target range: 1133 -> 290 1 : MetMetAsnGlnLeuAsnGluGlnSerValLeuMetProValSerTyrAlaArgAspTyrGl : 21 :!!:!:!....! !|||!!::!!!!!|||:!!! !:!!!:! .!! !..! !!! ValValThrMetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAs 1133 : GTGGTCACGATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGA : 1073 22 : uTyrSerIleGlnValAsnArgTrpLeuLeuLysProIleGlyAlaTrpProAsnLeuThrL : 42 :||||||:!!||| !||||||||| !:!!||| !|||||||||||||||.!. . pTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGln------S 1072 : TTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAG------T : 1016 43 : ysAlaThrArgThrGluLysLeuLeuValLysLeuLeuAsnPheIleCysHisSerLeuIle : 62 ..:!!:!!!.! !|||!:!:!!:!! !::!:!!|||||| ! ||||||:!!!!! !:!! erSerSerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaVal 1015 : CCTCGTCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTA : 956 63 : IlePheThrValMetProCysIleMetTyrIlePheTyrGluAspGluSerLeuLysThrAr : 83 :!!||||||:!!!!:|||||| :!!:!!:!!.!. ||| ! |||!!!!!! ! |||!: LeuPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLy 955 : CTATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAA : 893 84 : gMetLysAlaIleGlyProThrSerHisTrpLeuMetGlyGluLeuAsnTyrCysCysLeuL : 104 !:!!||| !:!!|||||| !|||||||||:!!.!. !! :!!!:!||| ! |||| sValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuL 892 : AGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGT : 830 105 : euMetArgAlaLysGluIleValTyrCysIleGluHisIleLysTyrAspTrpLysThrVal : 124 ||:!!||| !||| ||| !:!!! !.!!.!.|||!!::!! !||||||!:!|||..! euLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThr 829 : TGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACG : 770 125 : ArgArgAlaArgAspArgGluLeuMetIleLysAsnAlaLysLeuGlyArgPheIleAlaCy : 145 ! ||| ... :::|||:::|||:!:||| !!||||||!!!.!!|||!:! ||| MetArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIl 769 : AtgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGAT : 707 146 : sIleAlaAlaLeuCysMetHisSerGlyIleMetSerTyrThrValIleThrGlyPheLysL : 166 ! !..!.!!:!!! !!!:|||.!!||||||:!:.!!||| !|||!!:|||!.!|||! ! eSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrT 706 : TTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCA : 644 167 : ysIleThrPheGlnIleGlyAsnAspSerTyrSerMetTyrArgLeuProCysProPheTyr : 186 !!!:..! !! !:!!||||||!!:!!! ! !:!! ! !||||||! |||.!.||| hrMetValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyr 643 : CGATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTAC : 584 187 : ThrAsnLeuLeuAspValArgPheSerProMetAsnGluIleValPheAlaLeuGlnLeuLe : 207 ! !...|||||| ||| ! !:! !!|||||||||||||||.!! !! !|||!!!|| LysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLe 583 : AAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCT : 521 208 : uSerGlyPheIleSerThrSerValThrValGlyAlaCysGlyLeuAlaAlaValLeuAlaM : 228 |||||||||||||:!!!.!!!! !.!!:!!.!!!.! .!!|||.!!::!!.!|||.!! uSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrS 520 : CTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACAT : 458 229 : etHisAlaCysGlyGlnPheAsnValValMetIleArgSerAspLysLeuValLysAspAsn : 248 ||||||! !||||||!!...!|||||||||:!: !! !!!: ! !!!|||!..||| erHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAla 457 : CACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCG : 398 249 : AsnGluLysLysGlnAspGluGlnThrLeuHisLysLysLeuGlyPheIleValGluHisHi : 269 !.....!:! !:!!|||!!:!!. ! ! :!!:!! ! ||||||||| ! || ArgArgArgGlyLysAspAspHis------PheAspGluIleProThrIleValGluLysHi 397 : AGACGCAGAGGGAAGGACGATCAT------TTCGACGAAATACCGACAATCGTGGAGAAACA : 341 270 : sLeuArgThrLeuSerLeuValTrpTyrMetGluLysValMetAsnMet : 285 |||||||..!|||!.!! !|||!! ! :!!!!: !:!!:!! ||| sLeuArgValLeuLys***ValCysLeuLeuAspLeuIleLeuProMet 340 : TTTGAGAGTGTTGAAGTAAGTATGTTTGTTGGATTTGATTTTGCCGATG : 291 vulgar: AmOr26 0 285 . LHQN01028641.1 1133 290 - 494 M 39 117 G 2 0 M 215 645 G 2 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 291 1133 494 - . gene_id 1 ; sequence AmOr26 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 291 1133 . - . LHQN01028641.1 exonerate:protein2genome:local exon 291 1133 . - . insertions 0 ; deletions 4 LHQN01028641.1 exonerate:protein2genome:local similarity 291 1133 494 - . alignment_id 1 ; Query AmOr26 ; Align 1134 1 117 ; Align 1017 42 645 ; Align 372 259 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 373 Query range: 2 -> 164 Target range: 384 -> 867 3 : AsnGlnThrAlaIleThrGlu<->GluIleLysThrAsnSerAspTyrSerLeuGlnLeuAsnA : 23 :!!:!!|||!.!:!!|||||| .!.|||! .!!!:!||||||||||||||||||! !|||| AspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnA 385 : GACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATC : 448 24 : rgTrpPheLeuLysProIleGlyAlaTrpProLeuPheSerThrThrThrLysPheGluLysTh : 44 ||||| :!!||| !||||||.!!||||||! !|||||| :!!!!..!!|||!:!!. rgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSer------SerAsnLeuGluArgAs 449 : GATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCG------TCGAACCTCGAGAGAAA : 505 45 : rValSerLeuIleLeuAsnIleIleCysTyrAlaIleValIleLeuCysAlaThrProSerLeu : 65 !:!!|||! !|||||||||:!:|||||||||.!! !:!!:!!!!!! !! !|||!!!! ! nIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSer 506 : CATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCG : 568 66 : MetGlnIleIleLeuAlaGluGluSerPheTyrLeuLysLeuLysThrLeuGlyProValSerH : 87 :!!!!.:!!!!:|||! !:!!! !!!!|||||| !|||:!!|||! !|||||| !!:!!|||| LeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuSerH 569 : TTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCC : 634 88 : isTrpPheValSerThrValAsnTyrThrAlaLeuLeuMetLysSerLysAspIleArgTyrCy : 108 ||||| ! !!!!!! !:!!!:!|||||| !||||||:!!::! !!||| !|||!.!:!!! isTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPh 635 : ACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTT : 697 109 : sPheGluHisMetGluAlaAspTrpGlnThrIleLysArgMetGluAspGlnGlnThrMetLeu : 129 ! !!.!.|||||||||.!!||||||::!|||! ||| ||| ::::::...|||||| eValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeu 698 : TGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTG : 760 130 : LysAsnAlaLysPheGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnGlyGlyIleL : 151 ||| !!|||||||||.!!||||||!.!||| !! !||||||||||||!!:!!.|||||||||| LysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleL 761 : AAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACACGGTGGTATAC : 826 152 : euCysPheCysPheValThrIleLeuThrThrGluThrIle : 164 || ! !:!||| !!:!!||| ! !|||||| !..!:!! euGlyTyrCysValMetThrAlaSerThrThrMetValVal 827 : TTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTC : 867 vulgar: AmOr27 2 164 . LHQN01028951.1 384 867 + 373 M 7 21 G 0 3 M 27 81 G 2 0 M 126 378 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 385 867 373 + . gene_id 1 ; sequence AmOr27 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 385 867 . + . LHQN01028951.1 exonerate:protein2genome:local exon 385 867 . + . insertions 3 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 385 867 373 + . alignment_id 1 ; Query AmOr27 ; Align 385 3 21 ; Align 409 10 81 ; Align 490 39 378 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr29 Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 271 Query range: 0 -> 147 Target range: 375 -> 813 1 : MetLysAsnGlnGlnValValIleThrGlnAspAspTyrLysArgLysThrAsnLeuSerIleG : 22 |||!..|||.!.:!!..!|||:!!|||:!! !:!! ! !!..!:!:!!! !|||:!!| MetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuG 376 : ATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCC : 439 23 : lnTrpAsnArgTrpLeuLeuThrProIleGlyAlaTrpProAsnLeuArgLysSerArgIleGl : 43 |||||||||||||| !:!!! ! !||||||.!!||||||.!.!!! ..!|||!.!:!!! lnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPhe---SerSerAsnLeuGl 440 : AGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTC---TCGTCGAACCTCGA : 499 44 : yLysCysTyrSerLeuLeuIleSerIleIleCysTyrSerLeuIleGlyPheMetLeuValSer : 64 !!:! ! !|||! !:!!:!!!:!:!:|||||||||!!! !||| !||| !:!!:!! !! uArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIlePro 500 : GAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCT : 562 65 : CysSerIlePheLeuMetValGluIleAsnAsnIleTyrAsnLysLeuLysMetValGlyProL : 86 ||||||:!: !||||||:!!|||! !...!.!.!!|||!..|||:!!|||!!::!!||| !!| CysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerL 563 : TGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGT : 628 87 : euSerPhePheValMetThrIleMetLysTyrTyrPheLeuLeuPheHisGluAsnAspIleAr : 107 ||||| !!::|||.!. !|||!!:!..||| !.!.||||||.!.!.....!!. !|||!. euSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHi 629 : TGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACA : 691 108 : gGluGlyIleGluArgIleGluTrpAspTrpLysAsnValLysHisGlnGluAspArgAsnIle : 128 !.!. !:!!.!.!.!!!:||| ||||||!:!!....! ...:::||| :::...::: sHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluVal 692 : TCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtc : 754 129 : MetIleThrTyrAlaAsnTyrGlyArgLysLeuAlaPheIleCysPhePhePheMet : 147 |||:!:! !||||||!!.!:!.!!||| ! !|||.!!.!!||| .!!|||!!: MetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIle 755 : ATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATA : 813 vulgar: AmOr29 0 147 . LHQN01028951.1 375 813 + 271 M 37 111 G 1 0 M 109 327 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 376 813 271 + . gene_id 1 ; sequence AmOr29 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 376 813 . + . LHQN01028951.1 exonerate:protein2genome:local exon 376 813 . + . insertions 0 ; deletions 1 LHQN01028951.1 exonerate:protein2genome:local similarity 376 813 271 + . alignment_id 1 ; Query AmOr29 ; Align 376 1 111 ; Align 487 39 327 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr18 Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 241 Query range: 15 -> 171 Target range: 408 -> 870 16 : AsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuArgThrIleGlyT : 37 ||| ! !..! !..!!:!!:!:!!!:!! !||| !|||.!!:!!!:!!:!||||||| AsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyT 409 : AATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCA : 472 38 : hrTrpProArgSerProAspHisSerTrpLeuGluThrLeuGluHisValCysLeuAsnLeuPh : 58 ||||||||!:!! ! !!...:!! ||||||! ! ! ! ! ||||||:!!.! hrTrpProGlnPheSerSerAsn------LeuGluArgAsnIleSerArgIleLeuAsnValIl 473 : CATGGCCACAGTTCTCGTCGAAC------CTCGAGAGAAACATCTCTCGAATATTAAACGTGAT : 529 59 : eCysTyrGluLeuLeuAlaPheIleLeuIleProCysSerIleTyrIleIleLeuGluIleLys : 79 !|||||| !:!! !||| :!!||||||||||||:!::!!:!!!!:||||||! ! ! eCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGly 530 : CTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGG : 592 80 : AspPheTyrAsnGlnLeuLysLeuGlySerAlaLeuSerPhePheLeuMetAlaValMetLysT : 101 !||||||!..:!!:!!|||:!! !.!!:!!|||||| !!:::!!.!...!:!!!!:!..| ThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerT 593 : ACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTT : 658 102 : yrCysValPheIleIleArgGluAspAspIleArgLysCysValGluLeuIleGluAsnAspTr : 122 || !:!!.!.:!::!:|||... ! !|||!.! ! ! !|||.!.! !!!:|||!.!||||| yrThrMetLeuLeuLeuArgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTr 659 : ACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTG : 721 123 : pLysAsnValArgTyrGlnGluAspArgLysIleMetLeuGluAsnAlaSerPheSerArgArg : 143 |!:!!....! :::||| :::::::::||||||:!! !!|||!.!||||||||| ! pArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyr 722 : GAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATAC : 784 144 : LeuIleValIleCysGlyThrPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProL : 165 ! :!!.!!|||!.!! !|||!!::!!||||||:!!:!! |||! !:!! ! ! !!! AlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaS 785 : GCGGCGATTTTTTGTGCGATTTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGT : 850 166 : euThrArgAlaLysIleVal : 171 !|||! ! ! :!!||| erThrThrMetValValVal 851 : CCACCACGATGGTTGTCGTG : 870 vulgar: AmOr18 15 171 . LHQN01028951.1 408 870 + 241 M 29 87 G 2 0 M 125 375 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 409 870 241 + . gene_id 1 ; sequence AmOr18 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 409 870 . + . LHQN01028951.1 exonerate:protein2genome:local exon 409 870 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 409 870 241 + . alignment_id 1 ; Query AmOr18 ; Align 409 16 87 ; Align 496 47 375 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 262 Query range: 11 -> 162 Target range: 393 -> 840 12 : IleGlnThrAsnHisAspTyrLysArgAsnValAsnLeuSerIleGlnTrpSerArgTrpIleL : 33 :!: |||.!. !:!! ! !!:! !:!!! !|||:!!||||||!:!|||||| : ValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaM 394 : GTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGA : 457 34 : euLysProIleGlyLeuTrpProAsnSerSerThrIleSerThrThrGlyLysTyrLeuTyrAr : 54 !!||| !|||||| !||||||.!.! !||| |||!.! !! !!:! !!:!!! !|| etLysSerIleGlyThrTrpProGlnPheSer------SerAsnLeuGluArgAsnIleSerAr 458 : TGAAAAGCATAGGCACATGGCCACAGTTCTCG------TCGAACCTCGAGAGAAACATCTCTCG : 514 55 : gLeuIleAsnValIleCysTyrSerLeuIleSerPheLeuSerIleProCysSerLeuTyrVal : 75 |:!!:!!|||||||||||||||!!! !||| !|||! !! !|||||||||||||||:!!:!! gIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeu 515 : AATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTA : 577 76 : IleLeuGluValGluAspIleTyrAsnArgIleLysLeuPheGlyProLeuSerPheCysValM : 97 !!:|||||| !! ! !.!!|||!..!:!:!:|||:!!.!!||| !!|||||| !!! |||. MetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValP 578 : ATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGT : 643 98 : etAlaPheLeuLysTyrHisLeuLeuIleLeuHisLysAspAsnIleSerGluCysIleLysAr : 118 !...!.!!:!!!..||| !:!!|||:!:|||!..::: ! !.!||| !.!.! !:!!!!.!. heCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPheValAsnHi 644 : TCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTTTGTCAATCA : 706 119 : gIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspIleGluIleMetIleThrAsnAla : 139 !!!:||| ||||||!:!!..! ||| ...::: |||:::|||:!:! ! !!||| sMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAla 707 : TATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCG : 769 140 : AsnPheGlyArgArgLeuValIleIleCysThrPhePheMetTyrSerGlyPheAlaPheTyrT : 161 !!.|||.!!||| ! !!.!|||.!!|||.!!.!!|||!!::!!.!!|||.!. ! |||! LysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleLeuGlyTyrC 770 : AAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACACGGTGGTATACTTGGATATT : 835 162 : yrIle : 162 !:!! ysVal 836 : GTGTT : 840 vulgar: AmOr22 11 162 . LHQN01028951.1 393 840 + 262 M 32 96 G 2 0 M 117 351 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 394 840 262 + . gene_id 1 ; sequence AmOr22 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 394 840 . + . LHQN01028951.1 exonerate:protein2genome:local exon 394 840 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 394 840 262 + . alignment_id 1 ; Query AmOr22 ; Align 394 12 96 ; Align 490 46 351 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 391 Query range: 1 -> 165 Target range: 381 -> 867 2 : SerAsnArgSerValAlaIleLysThrAspProAspThrAsnSerAspTyrCysLeuGlnLeuA : 23 !:!:!!!:!!!!|||!.!! !:!!! !:!! ! !.!!!:!||||||||| !!||||||! !| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpA 382 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGA : 445 24 : snArgTrpPheLeuLysProIleGlyAlaTrpProSerPheProSerThrThrLysHisGluAr : 44 |||||||| :!!||| !||||||.!!||||||..!||| !!|||!.! ! ||||| snArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerAsnLeu------GluAr 446 : ATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGAACCTC------GAGAG : 502 45 : gIleIleSerPheLeuLeuAsnValSerCysTyrSerSerLeuLeuPheThrLeuIleProCys : 65 |! !|||||| :!!|||||||||! !||||||!!!:!!:!!||||||:!!:!!||||||||| gAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCys 503 : AAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGT : 565 66 : LeuLeuHisMetLeuLeuGluAspGluSerPheTyrLeuLysMetLysValLeuGlySerLeuA : 87 ! !||||||:!::!!|||||| ! ! !!!!|||||| !|||:!!|||:!!||||||||||||: SerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuS 566 : TCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGA : 631 88 : laHisTrpPheValGlyThrMetAsnTyrThrThrLeuLeuLeuArgGlyLysGluIleArgLe : 108 :!|||||| ! !! !!! !!!:!:!||||||! !|||||||||||| !!||| |||!.!! erHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHi 632 : GCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCA : 694 109 : uCysValGluHisIleArgThrAspTrpGlnThrValThrArgGluGluAspGlnGlnValMet : 129 !! !|||.!.|||!!:..!|||||||||::!|||..!||||||:::||| ::::::|||||| sPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMet 695 : CTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATG : 757 130 : LeuLysAsnAlaLysPheGlyArgTyrValAlaAlaValSerAlaAlaIleLeuGlnSerGlyV : 151 |||||| !!|||||||||.!!||||||!.!||| ! !!!!!||| !.!!:!!!!..!!|||: LeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyI 758 : TTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACACGGTGGTA : 823 152 : alAsnCysUnkCysCysMetThrIleSerArgThrGluLeuIle : 165 !! ! ! ||| !|||||| |||! !||| !:!!:!! leLeuGlyTyrCysValMetThrAlaSerThrThrMetValVal 824 : TACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTC : 867 vulgar: AmOr28PSE 1 165 . LHQN01028951.1 381 867 + 391 M 39 117 G 2 0 M 123 369 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 382 867 391 + . gene_id 1 ; sequence AmOr28PSE ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 382 867 . + . LHQN01028951.1 exonerate:protein2genome:local exon 382 867 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 382 867 391 + . alignment_id 1 ; Query AmOr28PSE ; Align 382 2 117 ; Align 499 43 369 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 335 -> 378 Target range: 212 -> 83 336 : GluGlnCysMetLysIleGlyGluValValTyrMetThrAspTrpTyrTyrLeuProAspLysT : 357 |||:!! !! |||:!!|||! ! !||||||||||||!!:|||||| ||| !!.!.|||| GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 358 : hrIleLeuAsnLeuIleLeuIleIleLeuArgSerThrValValValGlnIleThrAlaGlyLy : 378 || !|||..!!!!:!!:!!||||||! !||||||!:!:!!|||:!!:!!|||||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 379 : s : 378 | s 85 : A : 84 vulgar: AmOr27 335 378 . LHQN01029187.1 212 83 - 124 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 84 212 124 - . gene_id 1 ; sequence AmOr27 ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 84 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 84 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 84 212 124 - . alignment_id 1 ; Query AmOr27 ; Align 213 336 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 137 Query range: 335 -> 381 Target range: 212 -> 74 336 : GluGluSerMetLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProAspLysT : 357 ||||||!!!! |||||||||! ! !||||||||||||!!:|||||| ||| !!.!.|||| GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 358 : hrIleLeuAspLeuThrLeuIleIleAlaArgSerSerValValValGlnIleThrAlaGlyLy : 378 || !|||! !!!!..!:!!||||||:!!|||||||||:!!|||:!!:!!|||||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 379 : sLeuIleHis : 381 |!!!:!!:!! sPheValTyr 85 : ATTCGTATAC : 75 vulgar: AmOr28PSE 335 381 . LHQN01029187.1 212 74 - 137 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 75 212 137 - . gene_id 1 ; sequence AmOr28PSE ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 75 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 75 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 75 212 137 - . alignment_id 1 ; Query AmOr28PSE ; Align 213 336 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 165 Query range: 339 -> 384 Target range: 212 -> 77 340 : GluGlnGlyLysLysValGlyGluLysPheTyrMetThrGluTrpTyrGlnLeuProHisLysT : 361 |||:!! !! |||||||||! !||| ! ||||||||||||||||||!:!||| !!!!.|||| GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 362 : hrAlaLeuGlyLeuValLeuIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy : 382 |||||||||||!!!|||:!!|||||||||||||||||||||||||||||||||||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 383 : sLeuIle : 384 |!!!:!! sPheVal 85 : ATTCGTA : 78 vulgar: AmOr26 339 384 . LHQN01029187.1 212 77 - 165 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 78 212 165 - . gene_id 1 ; sequence AmOr26 ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 78 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 78 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 78 212 165 - . alignment_id 1 ; Query AmOr26 ; Align 213 340 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 333 -> 378 Target range: 212 -> 77 334 : AspGlnSerArgLysIleGlyGluValThrTyrMetIleGluTrpTyrArgLeuSerGlyLysL : 355 !!::!!!!!! !|||:!!|||! ! !..!||||||! !|||||||||||||||||| !|||! GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 356 : ysLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerMetLysLeuThrAlaGlyAs : 376 ||| !!! !|||:!!||||||:!!! |||!:!! ! !!!:|||:!!|||||||||!! hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 377 : nLeuIle : 378 .!!!:!! sPheVal 85 : ATTCGTA : 78 vulgar: AmOr21 333 378 . LHQN01029187.1 212 77 - 103 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 78 212 103 - . gene_id 1 ; sequence AmOr21 ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 78 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 78 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 78 212 103 - . alignment_id 1 ; Query AmOr21 ; Align 213 334 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr22 Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 341 -> 386 Target range: 212 -> 77 342 : GluGlnCysLysLysIleGlyGluIleSerTyrMetValAspTrpTyrArgLeuGluGlyAsnL : 363 |||:!! !! |||:!!|||! !! ! !||||||..!!!:||||||||||||... !!!.! GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 364 : ysLysLeuCysPheValLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAs : 384 ||| !!||||||:!!||||||:!!! |||!:!! ! !||||||:!!|||||||||!! hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 385 : nMetVal : 386 ..!.||| sPheVal 85 : ATTCGTA : 78 vulgar: AmOr22 341 386 . LHQN01029187.1 212 77 - 102 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 78 212 102 - . gene_id 1 ; sequence AmOr22 ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 78 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 78 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 78 212 102 - . alignment_id 1 ; Query AmOr22 ; Align 213 342 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr27 Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 339 -> 390 Target range: 121 -> 280 340 : LysIleGlyGluValValTyrMetThrAspTrpTyrTyrLeuProAspLysThrIleLeuAsnL : 361 |||:!!|||! ! !||||||||||||!!:|||||| ||| !!.!.|||||| !|||..!| LysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGlyL 122 : AAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGGTT : 185 362 : euIleLeuIleIleLeuArgSerThrValValValGlnIleThrAlaGlyLysLeuPhe<-><- : 381 ||:!!:!!||||||! !||||||!:!:!!|||:!!:!!|||||||||||||||!!! ! euValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheValTyr** 186 : TGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTATACTG : 248 382 : >AsnMetSerIleTyrThrPheGlyAspVal : 390 !.. !|||:!! ||||||||||||||| *ThrSerSerValAlaThrPheGlyAspVal 249 : AACATCGTCTGTCGCAACATTTGGCGATGTG : 280 vulgar: AmOr27 339 390 . LHQN01048470.1 121 280 + 127 M 41 123 G 0 6 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 122 280 127 + . gene_id 1 ; sequence AmOr27 ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 122 280 . + . LHQN01048470.1 exonerate:protein2genome:local exon 122 280 . + . insertions 6 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 122 280 127 + . alignment_id 1 ; Query AmOr27 ; Align 122 340 123 ; Align 251 381 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr28PSE Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 336 -> 381 Target range: 112 -> 247 337 : GluSerMetLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProAspLysThrI : 358 |||!!!! |||||||||! ! !||||||||||||!!:|||||| ||| !!.!.|||||| GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrA 113 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTG : 176 359 : leLeuAspLeuThrLeuIleIleAlaArgSerSerValValValGlnIleThrAlaGlyLysLe : 379 !|||! !|||..!:!!||||||:!!|||||||||:!!|||:!!:!!|||||||||||||||!! laLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPh 177 : CTCTCGGTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATT : 239 380 : uIleHis : 381 !:!!:!! eValTyr 240 : CGTATAC : 247 vulgar: AmOr28PSE 336 381 . LHQN01048470.1 112 247 + 136 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 113 247 136 + . gene_id 1 ; sequence AmOr28PSE ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 113 247 . + . LHQN01048470.1 exonerate:protein2genome:local exon 113 247 . + . insertions 0 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 113 247 136 + . alignment_id 1 ; Query AmOr28PSE ; Align 113 337 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr26 Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 343 -> 384 Target range: 121 -> 244 344 : LysValGlyGluLysPheTyrMetThrGluTrpTyrGlnLeuProHisLysThrAlaLeuGlyL : 365 |||||||||! !||| ! ||||||||||||||||||!:!||| !!!!.|||||||||||||||| LysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGlyL 122 : AAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGGTT : 185 366 : euValLeuIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysLeuIle : 384 |||||:!!|||||||||||||||||||||||||||||||||||||||||||||!!!:!! euValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheVal 186 : TGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTA : 244 vulgar: AmOr26 343 384 . LHQN01048470.1 121 244 + 165 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 122 244 165 + . gene_id 1 ; sequence AmOr26 ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 122 244 . + . LHQN01048470.1 exonerate:protein2genome:local exon 122 244 . + . insertions 0 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 122 244 165 + . alignment_id 1 ; Query AmOr26 ; Align 122 344 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr21 Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 334 -> 378 Target range: 112 -> 244 335 : GlnSerArgLysIleGlyGluValThrTyrMetIleGluTrpTyrArgLeuSerGlyLysLysL : 356 :!!!!!! !|||:!!|||! ! !..!||||||! !|||||||||||||||||| !|||! GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrA 113 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTG : 176 357 : ysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerMetLysLeuThrAlaGlyAsnLe : 377 ||| !!! |||:!!||||||:!!! |||!:!! ! !!!:|||:!!|||||||||!!.!! laLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPh 177 : CTCTCGGTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATT : 239 378 : uIle : 378 !:!! eVal 240 : CGTA : 244 vulgar: AmOr21 334 378 . LHQN01048470.1 112 244 + 102 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 113 244 102 + . gene_id 1 ; sequence AmOr21 ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 113 244 . + . LHQN01048470.1 exonerate:protein2genome:local exon 113 244 . + . insertions 0 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 113 244 102 + . alignment_id 1 ; Query AmOr21 ; Align 113 335 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr62 Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 256 -> 382 Target range: 1306928 -> 1306556 257 : LeuAlaValLeuValAsnAspLeuGluGlnThrPheAsnMetIleIlePheValGl : 275 ||| ! !:!!|||||||||:::...... |||... |||:!!|||||||| LeuTyrSerValValAsnAspValAsnAsnLeuPheThrProIleValPheValGl 1306928 : TTATACAGCGTGGTGAATGatgtgaataatttatttactccCATCGTTTTCGTACA : 1306874 276 : nLeuLeuMetSerAlaLeuLeuIleCysValGluGlyPheValPheLeuValCysL : 294 |||||||! |||!.!:!!:!!||||||:!!...|||||| !.! !! nLeuLeuThrSerGlyIleValIleCysLeuSerGlyPhe---------AlaValP 1306873 : ACTTCTTACAAGCGGAATAGTAATTTGTTTAAGTGGATTC---------GCGGTTT : 1306826 295 : euSerThrLysAspAsnIleGlyAlaLeuLysSerMetValLeuMetValThrLeu : 312 !!..!!.! ! ! !..!! !! ! !||||||! !:!: !! !:!! !:!!:!! heAspAsnAspAlaArgThrAspIleLeuLysTyrValSerTyrLeuSerSerIle 1306825 : TCGATAACGACGCCCGTACCGATATTCTGAAATACGTATCTTATTTGTCCTCGATT : 1306772 313 : LeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAspAlaLeuGluSerArgThrGl : 331 ! !:!:||||||! |||!::..!! !!|||!!: !|||! ..!..!!:! TrpLeuGlnLeuLeuLeuTrpCysLeuProGlyGluIleLeuValGlnGluSerLe 1306771 : TGGTTGCAACTTTTGTTATGGTGTTTGCCCGGTGAAATTCTCGTTCAAGAGAGTTT : 1306715 332 : uGluIleAlaGlnAlaAlaPheHisSerPhe<->TrpTyrGlnSerArgGlyArgT : 349 !||||||!.!!!.!.!!.!!:! !:! ! ||||||.!.! !! ! !! ! uGluIleGlyHisValValTyrLeuAsnValProTrpTyrAsnLeuProProIleT 1306714 : AGAAATAGGACACGTAGTCTACTTAAATGTACCATGGTACAATTTGCCGCCAATTT : 1306658 350 : hrAlaArgAspLeuIleLeuIleIleCysArgGlyAsnSerSerTyrHisValThr : 367 ! !||| ! ||| !:!!!!:||| !|||!.!.!...!! !! ! !:!!||| yrGlnArgLysLeuCysMetMetIleLeuArgAlaGlnGlnTyrCysSerIleThr 1306657 : ACCAGAGAAAACTTTGCATGATGATCCTTAGGGCACAACAATATTGCAGCATCACG : 1306604 368 : AlaGlyLysPheValPheMetAsnIlePheThrPheLysGluIle : 382 ||| !! !||| ! :!!::!||| !|||!!.! !...:!: AlaLeuThrPheArgThrLeuSerIleHisThrLeuThrSerVal 1306603 : GCATTAACGTTTCGAACGTTGTCTATTCACACGTTAACGAGCGTG : 1306557 vulgar: AmOr62 256 382 . KQ414608.1 1306928 1306556 - 100 M 32 96 G 3 0 M 50 150 G 0 3 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1306557 1306928 100 - . gene_id 1 ; sequence AmOr62 ; gene_orientation . KQ414608.1 exonerate:protein2genome:local cds 1306557 1306928 . - . KQ414608.1 exonerate:protein2genome:local exon 1306557 1306928 . - . insertions 3 ; deletions 3 KQ414608.1 exonerate:protein2genome:local similarity 1306557 1306928 100 - . alignment_id 1 ; Query AmOr62 ; Align 1306929 257 96 ; Align 1306833 292 150 ; Align 1306680 342 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 338 -> 389 Target range: 204772 -> 204925 339 : GlnGlySerGluIleAlaThrAlaLeuTyrGluIleGluTrpTyrAsnLeuProGlyA : 358 :!!..!..!|||:!! !..!||| !|||||| !||||||! |||||| !..!! LysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerA 204773 : AAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGA : 204830 359 : rgLysAlaArgAspIleIleLeuLeuLeuValIleSerLysTyrProProLysLeuTh : 377 .!||||||!:!..!:!:||||||:!!:!!!.!! :!!:!! |||! ! ||||| snLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuTh 204831 : ACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAAC : 204887 378 : rAlaGlyLysIlePheIleLeuSerMetAsnThrPhe : 389 ||||||||||:::||| ::!!!!||| |||||| rAlaGlyLysLeuPheProMetThrMetLeuThrPhe 204888 : CGcaggaaaattatttcctatGACGATGCTAACGTTT : 204925 vulgar: AmOr51 338 389 . KQ414617.1 204772 204925 + 113 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204773 204925 113 + . gene_id 1 ; sequence AmOr51 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204773 204925 . + . KQ414617.1 exonerate:protein2genome:local exon 204773 204925 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204773 204925 113 + . alignment_id 1 ; Query AmOr51 ; Align 204773 339 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 13 -> 242 Target range: 203432 -> 204218 14 : AsnLeuAsnTyrGluLysAspIleValTyrValThrLysHisAsnLysTrpIleLeuA : 33 :::||| !!:! !|||.!!! !!::!.!..!::! |||:::! ! !|||! SerLeuLeuPheCysProAspPheGluTrpAlaValArgMetAsnArgSerSerLeuA 203433 : TCGTTGCTCTTTTGCCCAGACTTCGAATGGGCAGTTCGGATGAATCGCTCTAGTTTGA : 203490 34 : snSerIleGlyIleTrp<->ProThrValLeuLysGlyIleAspGluTyrLeuProLy : 51 ..! !||||||:!!||| ! !! !! ! ||| ::::::||| || rgIleIleGlyLeuTrpPheGluGluAspHisAlaGlyThrMetLysPheLeuArgLy 203491 : GAATAATTGGTCTTTGGTTTGAAGAAGATCACGCTggaacgatgaaatttttaagaaa : 203547 52 : sIleAlaIleAlaLeuSerAsnLeuValLeuSerPheThrValIleGlnCysValLeu : 70 |::: ! ! ! !! ! |||:!!:!! !|||..! !:!!! ! !||| sLeuArgAsnMetGlyIleValLeuIleIleLeuPheValCysValLeuProCysLeu 203548 : attacgcAATATGGGGATCGTGCTGATAATCCTCTTCGTTTGTGTACTTCCTTGCCTC : 203604 71 : HisIleLeuLeuGluGlnLysAspProIleLeuArg<->LeuLysIleLeuGlyLeuT : 89 :!! !|||:!!:!!||| ||| !:!!:!! ! :!! ! ! !|||..!! !| TyrSerLeuIleLysGlnCysAspSerLeuMetAlaValIleAspAsnLeuSerTyrT 203605 : TACTCTTTGATCAAACAATGTGACAGTTTAATGGCGGTGATAGATAATCTTTCATATA : 203664 90 : hrPhePheSerPheIleSerLeuMetLysTyrTrpValLeuThrMetArgLysPro{L : 108 ||.!! !! ! |||!!!|||||||||||| |||:!! !! !:!||| { hrIleProLeuThrIleThrLeuMetLysTyrIleValIleLeuSerLysLysGlu{V 203665 : CTATTCCTTTGACAATAACACTGATGAAGTATATCGTTATATTGAGTAAAAaggaa{g : 203721 109 : } >>>> Target Intron 1 >>>> {ys}IleLysLeuCysIleGluGlnIle : 116 } 93 bp { }:!! !! ! !:!!.!...!||| }++ ++{al}LeuLeuProLeuValAsnMetIle 203722 : }gt.........................ag{TT}CTCTTGCCACTCGTAAACATGATC : 203838 117 : GlnHisAspTrpLysGlnValGluPheGluArgAspArgLysLeuMetLeuLysTyrG : 136 !.!.|||||| !:!!:!!:!! !!: !!!:||| ! :!!|||:!!:!! AlaGluAspTrpAlaLysLeuLysThrAspPheGluArgAspValMetIleGlnArgT 203839 : GCGGAAGATTGGGCAAAGTTGAAAACGGATTTCGAAAGAGACGTGATGATACAACGAA : 203898 137 : lyIleIleGlyArgAsnLeuSerMetTyrSerIleValPheMetTyrSerGlyGlyIl : 155 ! !||| !||| !|||!!: ||| !!.!!!.!!:!:!!!!!.!! !!! hrArgIleThrArgAlaThrSerIleLeuSerTyrAlaLeuIlePheThrAlaValMe 203899 : CACGAATTACCCGAGCAACCAGTATACTGAGTTATGCGTTAATATTTACTGCAGTAAT : 203955 156 : eIleTyrHisThrValMetHisTyrLysLeuGlySer<->TyrValAspGluTyrAsn : 173 :.!! ..!:!! ... ! :!! !!!! |||||| .!. ! !.! tPheMetIleValLeuProArgThrGlyIleThrThrArgTyrValThrAsnGluThr 203956 : GTTCATGATAGTCCTACCAAGAACCGGTATTACCACTAGATACGTAACAAACGAAACC : 204012 174 : ArgThrIleLysLeuLeuIleTyrProThrTyrSerArgLeuTyrAspValGlnLysS : 193 !.!! !! !||||||!!! ||||||||| :::||||||:::...:!!! AsnIleLysLysLeuPheProValProThrTyr---TyrIleTyrAspIleSerGluT 204013 : AACATAAAAAAGCTTTTTCCGGTGCCaacttat---tatatttacgatataTCTGAAA : 204069 194 : erProValTyrGluLeuValTyrIleLeuGlnCysIleCysGlyTyrMetPheAspAl : 212 !!||| !!:!|||:!!:!!!:!:!!|||||| ! ! ! :!:.!.! hrProTyrPheGluIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLe 204070 : CTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACT : 204126 213 : aValThrValGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisIleCysGlyGln : 231 ! ! !:!!|||!.! !..!!!! !!.!:!!!!. ! !||||||||||||||| uCysTyrIleGlyValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGln 204127 : TTGTTACATTGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAA : 204183 232 : IleAspIleValMetAlaLysLeuGluAspLeu : 242 :!:!!:! !:!! .!!::!|||! !:!!:!! LeuGluAsnLeuArgThrArgLeuAlaAsnIle 204184 : TTGGAAAATCTTCGTACACGACTTGCAAACATA : 204218 vulgar: AmOr58 13 242 . KQ414617.1 203432 204218 + 150 M 25 75 G 0 3 M 44 132 G 0 3 M 25 75 S 0 1 5 0 2 I 0 89 3 0 2 S 1 2 M 59 177 G 0 3 M 17 51 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203433 204218 150 + . gene_id 1 ; sequence AmOr58 ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203433 203721 . + . KQ414617.1 exonerate:protein2genome:local exon 203433 203721 . + . insertions 6 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 203722 203723 . + . intron_id 1 ; splice_site "gt" KQ414617.1 exonerate:protein2genome:local intron 203722 203814 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 203813 203814 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 203815 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 203815 204218 . + . insertions 3 ; deletions 1 KQ414617.1 exonerate:protein2genome:local similarity 203433 204218 150 + . alignment_id 1 ; Query AmOr58 ; Align 203433 14 75 ; Align 203511 39 132 ; Align 203646 83 75 ; Align 203817 109 177 ; Align 203997 168 51 ; Align 204048 186 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 326 -> 397 Target range: 204721 -> 204934 327 : PheIlePheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuSerGluGluCysL : 346 ......||| :::::! !||| ...... |||||| !:!!! !: LeuPhePheProLeuTyrTyrLeuSerSerPheSerIleSerLeuSerIleLysSerG 204722 : cttttctttcctctatACTACTTgtcttcattttcaatttctttgtCGATAAAGTCCG : 204779 347 : ysSerIleGlyLeuSerAlaTyrMetIleAspTrpHisArgLeuProGlyLysLysAl : 365 !!..!:!! !:!!:!!|||||| !!!:||| !.!||| !..!!!.||||| luGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsnLysAl 204780 : AAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAACAAGGC : 204836 366 : aLeuSerLeuIleLeuIleSerAlaAlaSerAsnSerSerThrLysLeuThrAlaGly : 384 | !|||||||||||||||! !||| !:!!.!.!!! !! ! |||||||||||| aLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuThrAlaGly 204837 : GAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGcagga : 204893 385 : LysLeuValGluLeuSerLeuSerSerPheCysSerVal : 397 |||||| ::!!!!:!! !!!!||||||!:!||| LysLeuPheProMetThrMetLeuThrPheCysAsnVal 204894 : aaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: AmOr35 326 397 . KQ414617.1 204721 204934 + 107 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204722 204934 107 + . gene_id 1 ; sequence AmOr35 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204722 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204722 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204722 204934 107 + . alignment_id 1 ; Query AmOr35 ; Align 204722 327 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr62 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 329 -> 396 Target range: 1387619 -> 1387955 330 : ThrGluGluIleAlaGlnAlaAlaPheHisSerPheTrpTyrGlnSerArgGlyAr : 348 :::|||...|||.!!|||:!:...:::::: ...||||||.!. !!:! !|| SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 349 : gThrAlaArgAspLeuIleLeuIleIleCysArgGlyAsnSerSerTyrHisValT : 367 | !|||||| ::::::||||||||| |||..!.!.!.!..!! :!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 368 : hrAlaGlyLysPheValPheMetAsnIlePheThrPheLysGlu >>>> Targe : 382 ||||||||||||||||| !:!:::!:!: !.!!||| .!. hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt.......... : 1387778 383 : t Intron 1 >>>> IleLeuLysSerSerAlaSerTyrLeuSerValLeuLys : 394 135 bp :::||||||:!!||||||||||||:!!||||||||| ! ++MetLeuLysAlaSerAlaSerTyrValSerValLeuHis 1387779 : ...............agatgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTTGCAT : 1387947 395 : ValMet : 396 !.!||| AlaMet 1387948 : GCAATG : 1387955 vulgar: AmOr62 329 396 . KQ414716.1 1387619 1387955 + 126 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387955 126 + . gene_id 1 ; sequence AmOr62 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387955 126 + . alignment_id 1 ; Query AmOr62 ; Align 1387620 330 156 ; Align 1387911 382 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 350 -> 411 Target range: 1345582 -> 1345843 351 : SerAlaTyrMetIleAspTrpHisArgLeuProGlyLysLysAlaLeuSerLeuIl : 369 :!!..!|||.!.! !:!!|||:!! !||||||! !||| ! .!!! !|||||||| AlaCysTyrPheSerAsnTrpTyrAspLeuProAspLysTyrThrArgSerLeuIl 1345583 : GCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAAATACACGCGATCGTTAAT : 1345637 370 : eLeuIleSerAlaAlaSerAsnSerSerThrLysLeuThrAlaGlyLysLeuValG : 388 |!!! !! !||| !|||.!.!.! !!:!! ! |||||||||||||||!!! !! ePheCysIleAlaArgSerGlnLysProSerTyrLeuThrAlaGlyLysPheTyrV 1345638 : ATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAGCTGGCAAGTTCTACG : 1345694 389 : luLeuSerLeuSerSerPheCysSer >>>> Target Intron 1 >>>> V : 397 !!!!||||||..!!!!||| !!! ! 78 bp : alPheSerLeuGluThrPheGlyIle++ ++I 1345695 : TGTTCTCGTTAGAAACATTCGGCATCgt.........................agA : 1345799 398 : alLeuLysSerSerLeuAlaTyrLeuSerLeuLeuArgThrLeu : 411 !!:!!|||:!!|||:!!||||||||||||:!!|||!:!!:!:!! leValLysAlaSerMetAlaTyrLeuSerValLeuLysSerIle 1345800 : TAGTAAAAGCGTCGATGGCCTATCTTTCCGTTCTGAAAAGCATT : 1345843 vulgar: AmOr35 350 411 . KQ414782.1 1345582 1345843 + 109 M 46 138 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345583 1345843 109 + . gene_id 1 ; sequence AmOr35 ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345583 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345583 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345843 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345843 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345583 1345843 109 + . alignment_id 1 ; Query AmOr35 ; Align 1345583 351 138 ; Align 1345799 397 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr62 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 329 -> 394 Target range: 1345564 -> 1345837 330 : ThrGluGluIleAlaGlnAlaAlaPheHisSerPheTrpTyrGlnSerArgGlyAr : 348 !:!...|||!!: !||||||..!!:! !||| !||||||.!.! !! !! !!: SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 349 : gThrAlaArgAspLeuIleLeuIleIleCysArgGlyAsnSerSerTyrHisValT : 367 ! !.!!|||...||||||!!! !|||..!|||..!.!.!.! !!! :!!:!!| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 368 : hrAlaGlyLysPheValPheMetAsnIlePheThrPheLysGlu >>>> Targe : 382 |||||||||||||| ! ! .!.::::!! |||||| hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIle++ 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCgt.......... : 1345723 383 : t Intron 1 >>>> IleLeuLysSerSerAlaSerTyrLeuSerValLeuLys : 394 78 bp |||:!!|||:!!||| !:!!|||||||||||||||||| ++IleValLysAlaSerMetAlaTyrLeuSerValLeuLys 1345724 : ...............agATAGTAAAAGCGTCGATGGCCTATCTTTCCGTTCTGAAA : 1345835 vulgar: AmOr62 329 394 . KQ414782.1 1345564 1345837 + 115 M 52 156 5 0 2 I 0 74 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345837 115 + . gene_id 1 ; sequence AmOr62 ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345565 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345837 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345837 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345837 115 + . alignment_id 1 ; Query AmOr62 ; Align 1345565 330 156 ; Align 1345799 382 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 341 -> 394 Target range: 1345564 -> 1345723 342 : SerSerAsnIleGlyLeuSerCysPheMetIleAspTrpTyrTyrLeuProSerLy : 360 ||||||.!.!!: !! !:!!|||!:!.!.! !:!!|||||| !!||||||..!|| SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 361 : sThrIleArgGlyLeuIleLeuMetIleAlaIleSerSerAsnProThrLysIleS : 379 | !! |||..!||||||!!! |||||| !|||..!!!.|||:!! ! :!!! sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 380 : erAlaGlyGlyIleValAspLeuSerLeuSerThrPheGlyAsnVal : 394 !!|||||| !.!! !! !!!||||||..!|||||||||! !||| hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIleVal 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCGTG : 1345723 vulgar: AmOr59 341 394 . KQ414782.1 1345564 1345723 + 105 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345723 105 + . gene_id 1 ; sequence AmOr59 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345723 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345723 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345723 105 + . alignment_id 1 ; Query AmOr59 ; Align 1345565 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 339 -> 392 Target range: 1345564 -> 1345723 340 : GlySerGluIleAlaThrAlaLeuTyrGluIleGluTrpTyrAsnLeuProGlyAr : 358 .!!||||||!!: ! !|||! !||| ! !.!.||||||:!!||||||! !!: SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 359 : gLysAlaArgAspIleIleLeuLeuLeuValIleSerLysTyrProProLysLeuT : 377 ! ! .!!|||...:!!|||!!!! !:!!!.! !|||:!! ! ||| !! ! |||| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 378 : hrAlaGlyLysIlePheIleLeuSerMetAsnThrPheSerValVal : 392 |||||||||||.!!!:!:!:!!!|||:!:.!.||||||.!!:!!||| hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIleVal 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCGTG : 1345723 vulgar: AmOr51 339 392 . KQ414782.1 1345564 1345723 + 112 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345723 112 + . gene_id 1 ; sequence AmOr51 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345723 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345723 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345723 112 + . alignment_id 1 ; Query AmOr51 ; Align 1345565 340 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 308 -> 392 Target range: 33837 -> 34543 309 : SerAlaAlaIleLeuThrTyrValIleLeuLeuPheSerPheThrPheAsnIleLeuIle : 328 !:!!.! !:!:||| !!:!|||:!:!!!:!!! !! !.!! ! ! :!!|||! !||| AsnValGlnLeuLeuPhePheValLeuPheValCysPheIleLeuValHisIleTyrIle 33838 : AACGTGCAATTGCTTTTCTTCGTGCTGTTCGTATGCTTCATCCTTGTACACATCTACATT : 33895 329 : PheCysTyrValGlyGluLeuLeuLeuGlyGln >>>> Target Intron 1 >>>> : 340 !:!||||||:!!||||||:!!|||||| !!!. 454 bp TyrCysTyrIleGlyGluMetLeuLeuThrHis+- 33896 : TATTGTTACATAGGAGAGATGCTACTCACACATgc......................... : 33933 341 : GlySerGluIleAlaThrAlaLeuTyrGluIleGluTrpTyrAsnLeuProGlyArgL : 359 .!!!!!|||!!:::!!.!:!! !|||||| !.!.|||||||||:!! !! !! !: ++SerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProProG 33934 : agAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCAG : 34442 360 : ysAlaArgAspIleIleLeuLeuLeuValIleSerLysTyrProProLysLeuThrAlaG : 379 !!|||!:! !:!!:!!!!!:!!:!! !! !!!! !|||! ! |||||||||| luAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAlaG 34443 : AAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCAG : 34502 380 : lyLysIlePheIleLeuSerMetAsnThrPheSerValVal : 392 |||||.!! !! !!!!||||||.!.! !||||||..!||| lyLysPheSerThrPheSerMetGluMetPheSerThrVal 34503 : GAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTGTA : 34543 vulgar: AmOr51 308 392 . KQ414804.1 33837 34543 + 119 M 31 93 5 0 2 I 0 450 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33838 34543 119 + . gene_id 1 ; sequence AmOr51 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33838 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33838 33930 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 1 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34543 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34543 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33838 34543 119 + . alignment_id 1 ; Query AmOr51 ; Align 33838 309 93 ; Align 34385 340 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 112 -> 270 Target range: 36572 -> 37037 113 : IleGluGlnIleGlnHisAspTrpLysGlnValGluPheGluArgAspArgLysLeuMet : 132 !!:...|||||| !!|||||| !:!! ! ||| !|||||| ! !||| MetSerGlnIlePheAspAspTrpAlaGluProIleProGluValAspArgHisThrMet 36573 : ATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACGATG : 36630 133 : LeuLysTyrGlyIleIleGlyArgAsnLeuSerMetTyrSerIleValPheMetTyrSer : 152 |||||| !!.!! !|||.!!|||! :!!|||!!: !!!! !:!!.!.! !||| ! LeuLysThrAlaLysIleSerArgMetIleSerIleValCysSerIleLeuThrTyrVal 36631 : CTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTCTGTTCTATCCTGACGTATGTC : 36690 153 : GlyGlyIleIleTyrHisThrValMetHisTyrLysLeuGlySerTyrValAspGluTyr : 172 !! !:!: !!:! :!!:!!... !!::!.. ! !..! !!..!...|||!:! MetValLeuAlaPheLeuSerLeuGlnIleTrpSerSerMetGlnAsnThrSerGluPhe 36691 : ATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGCAGCATGCAAAACACCTCGGAGTTC : 36750 173 : AsnArgThrIleLysLeuLeuIleTyrProThrTyrSerArgLeuTyrAspValGlnLys : 192 ||| ..! ! !||||||||| !!|||!:! !! ||||||..!.!.||| Asn---ValGlyGlyLeuLeuIleProAlaThrPhePro------TyrAspThrAsnLys 36751 : AAC---GTAGGAGGACTACTTATCCCGGCCACATTTCCA------TACGACACGAATAAA : 36801 193 : SerProValTyrGluLeuValTyrIleLeuGlnCysIleCysGlyTyrMetPheAspAla : 212 |||||| !||||||:!!..!!:::!! !|||! !:!: ! ! :!! !! ! SerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrValLeuSerAlaIle 36802 : AGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATA : 36861 213 : ValThrValGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisIleCysGlyGlnIle : 232 ! ! ! !! ! ! !!!!!.!|||:!!.!!!.! !|||||||||||||||:!! CysTyrSerCysPheAspThrPheValAlaValLeuValLeuHisIleCysGlyGlnLeu 36862 : TGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTA : 36921 233 : AspIleValMetAlaLysLeuGluAspLeuValAspGlyLysPheSerLysGluAsnSer : 252 !:!!:!! ! ||||||:!!|||!.!:!! !! !.!.!.! ! .!. !!||| ThrValLeuArgIleAlaLeuGluAsnLeuAlaAsnThrThrIleLysAspAsnTyrSer 36922 : ACTGTTCTCCGCATTGCCCTCGAGAATCTTGCTAACACGACAATAAAAGACAACTACAGC : 36981 253 : AsnProAsnIleArgLeuIleGluIleIleGluHisHisIleLysIleLeuArg : 270 !!. !.!. !|||||| ! ! |||:!:.!....!!.! !:!!:!:!!!||| LysPheGlnGluArgLeuGlyTyrIleValHisArgGlnAsnGlnLeuPheArg 36982 : AAGTTCCAAGAACGATTAGGATACATTGTGCACAGGCAGAATCAATTGTTCAGG : 37037 vulgar: AmOr58 112 270 . KQ414804.1 36572 37037 + 101 M 61 183 G 1 0 M 11 33 G 2 0 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36573 37037 101 + . gene_id 1 ; sequence AmOr58 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36573 37037 . + . KQ414804.1 exonerate:protein2genome:local exon 36573 37037 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 36573 37037 101 + . alignment_id 1 ; Query AmOr58 ; Align 36573 113 183 ; Align 36756 175 33 ; Align 36789 188 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr62 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 332 -> 398 Target range: 39974 -> 40250 333 : IleAlaGlnAlaAlaPheHisSerPheTrpTyrGlnSerArgGlyArgThrAlaArgAsp : 352 |||!.!|||:!!|||!:! !!!!! !||||||.!.! !! ! !!:! !||| !... IleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHisAlaValSer 39975 : ATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCATGCTGTTTCG : 40032 353 : LeuIleLeuIleIleCysArgGlyAsnSerSerTyrHisValThrAlaGlyLysPheVal : 372 |||:!!:!!:!:|||||||||!.!.!. !|||!:!!!.:!!||||||||||||||| ! LeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGlyLysPheSer 40033 : TTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGT : 40092 373 : PheMetAsnIlePheThrPheLysGlu >>>> Target Intron 1 >>>> IleL : 383 !.!.::!:!! !|||!!.! 78 bp :!!| ProPheSerLeuGluLeuPheAsnAla++ ++ValL 40093 : CCCTTTTCTCTCGAGCTGTTTAACGCTgt.........................agGTTT : 40203 384 : euLysSerSerAlaSerTyrLeuSerValLeuLysValMetMetAsp : 398 |||||!!!||||||.!!||||||||||||||| !!.!|||! ||| euLysThrSerAlaGlyTyrLeuSerValLeuLeuAlaMetLysAsp 40204 : TAAAAACGTCTGCTGGATATCTTTCCGTGTTGCTAGCTATGAAAGAC : 40250 vulgar: AmOr62 332 398 . KQ414804.1 39974 40250 + 123 M 49 147 5 0 2 I 0 74 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39975 40250 123 + . gene_id 1 ; sequence AmOr62 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39975 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39975 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40250 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40250 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39975 40250 123 + . alignment_id 1 ; Query AmOr62 ; Align 39975 333 147 ; Align 40200 382 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 303 -> 400 Target range: 33810 -> 34558 304 : IleMetGluTrpSerValGlyAspThrIleThrLeuLeuThrPhePheThrLeuLeuIle : 323 |||:!:||| ..! !||| !! !..!! !||| !||||||..!|||!!!:!! IleLeuGluAsnGluLysGlyIlePheAsnValGlnLeuLeuPhePheValLeuPheVal 33811 : ATACTAGAAAACGAGAAAGGAATATTCAACGTGCAATTGCTTTTCTTCGTGCTGTTCGTA : 33868 324 : SerPheThrPhe<->AsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGln : 342 !!!|||! !.!! :!!|||!:!|||!:!|||||||||||||||!!:||| ! !!!. CysPheIleLeuValHisIleTyrIleTyrCysTyrIleGlyGluMetLeuLeuThrHis 33869 : TGCTTCATCCTTGTACACATCTACATTTATTGTTACATAGGAGAGATGCTACTCACACAT : 33928 343 : >>>> Target Intron 1 >>>> CysSerGlnIleGlyThrValSerTyrGluI : 353 454 bp !!!!!:!!!!:.!!!.! !:!!|||||| +- ++SerArgGluMetSerAsnSerAlaTyrGluS 33929 : gc.........................agAGCAGAGAAATGAGCAATTCCGCTTACGAGT : 34415 354 : leAspTrpTyrLysLeuSerProLysGluAlaTyrAspLeuIleLeuLeuIleSerIleS : 373 !:!!||||||!!.:!!|||||| !|||||| ! !|||:!!!!!:!!!!: !! !! erAsnTrpTyrAsnValSerProProGluAlaLysCysLeuLeuPheIleMetHisArgT 34416 : CAAACTGGTACAACGTCTCACCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAA : 34475 374 : erGlnHisProProLysLeuThrAlaGlyLysIleIleGluLeuSerLeuAsnThrPheS : 393 !! !.!|||! ! |||||||||||||||.!!! ! !!!|||:!!.!.! !|||| hrAlaArgProLeuCysLeuThrAlaGlyLysPheSerThrPheSerMetGluMetPheS 34476 : CCGCTCGTCCACTTTGCTTGACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCA : 34535 394 : erThrValAlaLysThrSerVal : 400 ||||||||::! :::::: erThrValSerProIleAsnIle 34536 : GTACTGTAAGCccgataaatatt : 34558 vulgar: AmOr53 303 400 . KQ414804.1 33810 34558 + 134 M 24 72 G 0 3 M 15 45 5 0 2 I 0 450 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33811 34558 134 + . gene_id 1 ; sequence AmOr53 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33811 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33811 33930 . + . insertions 3 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 1 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34558 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34558 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33811 34558 134 + . alignment_id 1 ; Query AmOr53 ; Align 33811 304 72 ; Align 33886 328 45 ; Align 34385 343 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 122 -> 277 Target range: 36590 -> 37052 123 : AspTrpMetMetValGlnAspProAsnHisArgThrIleMetLeuLysTyrAlaThrIle : 142 |||||| ! ! ! !!||| !! ||||||||| !|||! !||| AspTrpAlaGluProIleProGluValAspArgHisThrMetLeuLysThrAlaLysIle 36591 : GACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACGATGCTGAAGACCGCGAAAATT : 36648 143 : SerArgLysLeuIleThrMetCysAlaValPheLeuTyrThrGlyGlyMetSerTyrHis : 162 ||||||! !:!! !! !:!:|||:!!:!!.!. !|||..! !! !:!!:!!!:! SerArgMetIleSerIleValCysSerIleLeuThrTyrValMetValLeuAlaPheLeu 36649 : AGTCGAATGATATCCATAGTCTGTTCTATCCTGACGTATGTCATGGTTTTGGCCTTCTTG : 36708 163 : ThrIleMetGlnPheLeuSerLysGlyLysAsnLysAspAsnTyrThrIleArgProLeu : 182 :!! :!:|||.!!! !|||!.. !:!!|||! ....!.!:!!.!:!! !! !||| Ser---LeuGlnIleTrpSerSerMetGlnAsnThrSerGluPheAsnValGlyGlyLeu 36709 : TCA---CTTCAAATTTGGAGCAGCATGCAAAACACCTCGGAGTTCAACGTAGGAGGACTA : 36765 183 : ProTyrIleGlyTyrAspProPhePheAspThrGlnSerSerProThrTyrGluIleVal : 202 ! ! ! !.! !||| !:!||||||.!.!.!||||||!.!|||||||||..! LeuIleProAlaThrPhePro---TyrAspThrAsnLysSerProAsnTyrGluIleThr 36766 : CTTATCCCGGCCACATTTCCA---TACGACACGAATAAAAGTCCTAATTACGAAATTACT : 36822 203 : TyrCysIleHisCysPheThrAlaMetIleMetTyrSerIleSerThrValAlaTyrSer : 222 !:: ! !!!.! ! ! !.!!:!!:!:! ! ! !! !:!! ! ! !!!!! TrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSerCysPheAspThr 36823 : TGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGATACG : 36882 223 : LeuThrThrIlePheValThrHisIleCysGlyGlnIleGlnValGlnIleAlaArgLeu : 242 !!!..!.!!:!!.!!||| !|||||||||||||||:!! |||! ! ! !||| PheValAlaValLeuValLeuHisIleCysGlyGlnLeuThrValLeuArgIleAlaLeu 36883 : TTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTC : 36942 243 : GlnAspLeuValGluSerLysGluLysArgLysTyr<->LysAspCysAspProPheAla : 261 :!!:!!|||!.!.!.!!!! ! !||| !!!.||| ||| ! !!:! !!!.!.! GluAsnLeuAlaAsnThrThrIleLysAspAsnTyrSerLysPheGlnGluArgLeuGly 36943 : GAGAATCTTGCTAACACGACAATAAAAGACAACTACAGCAAGTTCCAAGAACGATTAGGA : 37002 262 : LeuIleValHisAspHisValGluValLeuArgPheSerAsnAsnIle : 277 ! !||||||||| !!. !:!!:!!!!!|||! ! |||...||| TyrIleValHisArgGlnAsnGlnLeuPheArg***MetAsnThrIle 37003 : TACATTGTGCACAGGCAGAATCAATTGTTCAGGTGAATgaatacgatt : 37052 vulgar: AmOr53 122 277 . KQ414804.1 36590 37052 + 108 M 41 123 G 1 0 M 25 75 G 1 0 M 64 192 G 0 3 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36591 37052 108 + . gene_id 2 ; sequence AmOr53 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36591 37052 . + . KQ414804.1 exonerate:protein2genome:local exon 36591 37052 . + . insertions 3 ; deletions 2 KQ414804.1 exonerate:protein2genome:local similarity 36591 37052 108 + . alignment_id 2 ; Query AmOr53 ; Align 36591 123 123 ; Align 36714 165 75 ; Align 36789 191 192 ; Align 36984 255 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 341 -> 395 Target range: 39974 -> 40136 342 : ValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspLysAspIleLeuAsn : 361 :!!|||.!. !.!||| !|||||||||.!.|||||| ||| !! !:!!::: IleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHisAlaValSer 39975 : ATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCATGCTGTTTCG : 40032 362 : LeuIleMetIleIleSerArgSerSerValGluValLysIleThrAlaGlyLysIleIle : 381 |||:!!!!::!:|||!!!|||:!!..!|||... !!:!!|||||||||||||||.!!! ! LeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGlyLysPheSer 40033 : TTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGT : 40092 382 : ThrMetSerIleTyrThrPheGlyAsnIleValLysThrVal : 395 !!.!.|||:!! ! !|||..! !:!: !::!! !:!! ProPheSerLeuGluLeuPheAsnAlaValSerArgIleIle 40093 : CCCTTTTCTCTCGAGCTGTTTAACGCTGTGAGTCGAATTATC : 40136 vulgar: AmOr50 341 395 . KQ414804.1 39974 40136 + 107 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39975 40136 107 + . gene_id 1 ; sequence AmOr50 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39975 40136 . + . KQ414804.1 exonerate:protein2genome:local exon 39975 40136 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39975 40136 107 + . alignment_id 1 ; Query AmOr50 ; Align 39975 342 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 342 -> 394 Target range: 39974 -> 40130 343 : IleGlyGluAlaValTyrMetThrAsnTrpTyrTyrLeuProGlyLysAspIleLeuAsn : 362 ||||||:!!:!!!.!||| !||||||||| !!|||||| !||| !! !:!!::: IleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHisAlaValSer 39975 : ATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCATGCTGTTTCG : 40032 363 : LeuValGlnIleIleLeuArgSerSerMetValIleLysIleThrAlaGlyLysLeuVal : 382 |||||| :!:|||! !|||:!!..!:!! !.!!:!!|||||||||||||||!!! ! LeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGlyLysPheSer 40033 : TTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGT : 40092 383 : HisMetSerIleTyrThrPheGlyAsnValMetLys : 394 ! !.!.|||:!! ! !|||..! !|||! ::! ProPheSerLeuGluLeuPheAsnAlaValSerArg 40093 : CCCTTTTCTCTCGAGCTGTTTAACGCTGTGAGTCGA : 40130 vulgar: AmOr32 342 394 . KQ414804.1 39974 40130 + 100 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39975 40130 100 + . gene_id 1 ; sequence AmOr32 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39975 40130 . + . KQ414804.1 exonerate:protein2genome:local exon 39975 40130 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39975 40130 100 + . alignment_id 1 ; Query AmOr32 ; Align 39975 343 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1356 Query range: 9 -> 391 Target range: 262825 -> 264885 10 : GluSerPheAspSerLeuCysAspTyrSerLeuGlnLeuAsnArgTrpLeuLeuLysP : 29 |||||||||! !|||||| !!|||||||||||||||:!!||||||||||||||||||| GluSerPheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysP 262826 : GAAAGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAAC : 262883 30 : roIleGlyAlaTrpProSerSerSerSerSerSerLysLeuGluArgIleValSerPh : 48 ||||||||||||||||| !|||:!!|||! !|||!:!:!!|||||||||:!!!!!|| roIleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPh 262884 : CGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTT : 262940 49 : ePheLeuIleValLeuCysTyrGlyPheIleLeuPheThrValIleProSerLeuPhe : 67 |.!!|||||||||:!!|||||| !!.!!||||||! !|||||||||||||||:!!.!! eLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeu 262941 : TCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTT : 262997 68 : HisIleValLeuGluAspGluAsnLeuHisMetLysLeuLysValPheGlyProLeuS : 87 |||||||||||||||! !||||||!!!||||||||||||:!!|||.!!|||||||||. HisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuG 262998 : CATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCG : 263057 88 : erHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuGlnAsnLysGluIl : 106 !!!!.||||||:!!||| !|||||||||||| !|||||||||!!.!:!|||!!:|| lyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIl 263058 : GTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATAT : 263114 107 : eGlnTyrCysValGluHisMetGlnThrAspTrpLysIleValAsnArgAlaLysAsp : 125 |||| !||||||:!!|||:!!||| !|||||| ||||||!.!||| !:!!||| eGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAsp 263115 : ACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGAT : 263171 126 : GlnGlnValMetMetLysTyrAlaLysIleGlyArgTyrIleAlaAlaLeuCysAlaI : 145 |||!:::!!|||:!!||| !!|||||| !|||||||||:!:||||||! !||||||| GlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaI 263172 : CAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGA : 263231 146 : lePheMetGlnThrGlyValLeuThrTyrCysValValThrAlaPheSerThrArgIl : 164 ||||||||||||||.!!:!!:!! ! ! |||:!!||||||||||||!!!|||!:!:! lePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnVa 263232 : TCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGT : 263288 165 : eIleGluIleGlyAsnGluThrArgIleValHisMetLeuProCysProValTyrLys : 183 :|||||| !||||||||||||||||||:!!!.!|||||||||||||||||||||||| lIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLys 263289 : GATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAA : 263345 184 : GluLeuIleSerIleAspThrSerProThrAsnGluIleValLeuIleSerGlnPheV : 203 |||:!!||| !!:!!||||||!:!||||||||||||||| !!||| !!!!||||||: GluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheL 263346 : GAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTC : 263405 204 : alSerGlyPheIleValAsnSerIleAlaValGlyAlaIleSerIleGlyAlaValPh : 222 !!|||||||||||||||!.!:!!! !.!!|||||||||.!!.!!!!: !|||||||| euSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPh 263406 : TGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTT : 263462 223 : eThrAlaHisAlaCysGlyGlnLeuThrIleIleLysArgTrpIleArgGluTyrIle : 241 |.!!!.!||||||||||||||||||!.!:!::!:! ! !||||||! !|||!:!:!: eAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheVal 263463 : CGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTG : 263519 242 : AsnArgSerLysAspAsnAsnLysAsnValValIleAsnGluIleGlyGluIleValG : 261 |||!:!|||!:!|||.!.|||||||||:!! !.!!!.!|||||||||! !||||||| AsnGlnSerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValG 263520 : AACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTG : 263579 262 : luTyrHisLeuArgIleLeu{As} >>>> Target Intron 1 >>>> {n}Ph : 269 ||:!!|||||||||:!!|||{!:} 72 bp {!}|| luHisHisLeuArgValLeu{Se}++ ++{r}Ph 263580 : AACATCATCTGAGAGTTCTG{AG}gt.........................ag{T}TT : 263675 270 : eIleGluGlyIleGluAspValLeuAsnArgPheCysPheMetGluLeuPheLysSer : 288 ||||!!: !!|||:!!:!!|||:!!!:!! !.!.||||||:!!||||||||||||:!! eIleAspArgIleLysAsnValMetSerThrIleCysPheValGluLeuPheLysAla 263676 : CATAGATCGTATTAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCAAGGCT : 263732 289 : ThrLeuAspIleSerMetLeuGlyTyrTyrIleLeuThr >>>> Target Intro : 302 ||||||||||||!!!|||||||||||||||||||||||| 764 bp ThrLeuAspIleCysMetLeuGlyTyrTyrIleLeuThr++ 263733 : ACGCTGGATATATGCATGCTAGGTTACTACATACTTACGgt................. : 263776 303 : n 2 >>>> GluTrpAlaAspHisAspIleArgAsnLeuThrThrTyrPheMetIle : 317 ||||||! !..!|||||||||:::|||||||||||||||||||||||| ++GluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIle 263777 : ........agGAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATA : 264583 318 : LeuThrSerMetSerPheAsnIlePheIleIleCysTyrIleGlyAspIleLeuMetG : 337 |||! !||||||!!! !|||||||||:!!!!:||||||||||||!!:||||||! | LeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrG 264584 : CTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTG : 264643 338 : luGln >>>> Target Intron 3 >>>> CysArgLysValGlyGluValLeu : 346 ||||| 78 bp |||!:!|||||||||||||||:!! luGln++ ++CysLysLysValGlyGluValVal 264644 : AGcaggt.........................agTGTAAGAAAGTTGGTGAGGTGGTT : 264748 347 : TyrMetThrAsnTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLeuIleI : 366 ||||||:!!||||||||||||||||||||||||||||||||||||||||||||||||| TyrMetSerAsnTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLeuIleI 264749 : TACATGTCGAATTGGTATTACTTACCCTACAAAGATATCCTTGATCTGATTCTCATCA : 264808 367 : leSerArgSerAsnAlaValIleLysIleThrAlaGlyLysLeuThrAsnMetSerIl : 385 ||! !||||||!:!!.!|||.!!|||.!!||||||||||||:!! !:!!||||||!! leLeuArgSerSerValValPheLysPheThrAlaGlyLysIleLeuHisMetSerMe 264809 : TTTTAAGATCCAGCGTGGTGTTTAAATTCACCGCTGGAAAGATACTTCACATGTCCAT : 264865 386 : eTyrThrPheGlyAsnVal : 391 :|||||||||.!!:!!||| tTyrThrPheSerAspVal 264866 : GTACACATTCAGTGACGTA : 264885 vulgar: AmOr31 9 391 . KQ414889.1 262825 264885 + 1356 M 258 774 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 33 99 5 0 2 I 0 760 3 0 2 M 37 111 5 0 2 I 0 74 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262826 264885 1356 + . gene_id 1 ; sequence AmOr31 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262826 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262826 263601 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 263673 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263672 263673 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 263674 263773 . + . KQ414889.1 exonerate:protein2genome:local exon 263674 263773 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263774 263775 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263774 264537 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264536 264537 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264538 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264726 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262826 264885 1356 + . alignment_id 1 ; Query AmOr31 ; Align 262826 10 774 ; Align 263675 269 99 ; Align 264538 302 111 ; Align 264727 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1263 Query range: 0 -> 368 Target range: 259721 -> 262015 1 : MetThrSerLysSerValIleSerGluGluSerPheAspSerLeuCysAspTyrSerL : 20 ||||||!:!|||||||||.!! !||| !|||||| !|||! ! !!|||||||||| MetThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerL 259722 : ATGACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCC : 259779 21 : euGlnLeuAsnArgTrpLeuLeuLysProIleGlyAlaTrpProSerSerSerSerSe : 39 |||||!!!|||||||||!!!|||||||||||||||||||||||| !!|||||||||!! euGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 259780 : TCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCAC : 259836 40 : rSerLysLeuGluArgIleValSerPhePheLeuIleValLeuCysTyrGlyPheIle : 58 !!!!!:!||||||!:!|||:!!||| !!.!!|||||| !!:!!||||||.!! !||| rThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIle 259837 : GACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATA : 259893 59 : LeuPheThrValIleProSerLeuPheHisIleValLeuGluAspGluAsnLeuHisM : 78 ||| !!|||:!!||||||!!!:!!.!!|||!!::!!|||||| ! |||!:!|||:!!| LeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrM 259894 : CTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACA : 259953 79 : etLysLeuLysValPheGlyProLeuSerHisTrpPheIleGlyGlyIleAsnTyrTh : 97 ||||| !||||||.!!|||||||||!!!|||||||||:!!||| !!||||||||||| etLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrTh 259954 : TGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACAC : 260010 98 : rThrLeuLeuLeuGlnAsnLysGluIleGlnTyrCysValGluHisMetGlnThrAsp : 116 |||||||||||||::!..!!:!!!:|||! !||||||||||||:!!:!!!.!||| rThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAsp 260011 : AACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGAT : 260067 117 : TrpLysIleValAsnArgAlaLysAspGlnGlnValMetMetLysTyrAlaLysIleG : 136 |||!:!|||:!!!..|||! !|||||||||.!.||||||:!!!:!|||||||||.!!| TrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheG 260068 : TGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCG : 260127 137 : lyArgTyrIleAlaAlaLeuCysAlaIlePheMetGlnThrGlyValLeuThrTyrCy : 155 ||||||||:!!||||||! !|||||| !|||:!!||| !||||||||| !!:!|| lyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCy 260128 : GCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTG : 260184 156 : sValValThrAlaPheSerThrArgIleIleGluIleGlyAsnGluThrArgIleVal : 174 |:!!||||||!.!!!.||||||..!:!:|||:!!:!:||||||||||||||||||||| sLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal 260185 : TTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTT : 260241 175 : HisMetLeuProCysProValTyrLysGluLeuIleSerIleAspThrSerProThrA : 194 |||:!!||||||||| !!||||||||||||||||||!:!:!::!! !||||||! !| HisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetA 260242 : CATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGA : 260301 195 : snGluIleValLeuIleSerGlnPheValSerGlyPheIleValAsnSerIleAlaVa : 213 ||||||||||||||:!! !||||||||||||||||||||||||||||||! !.!!|| snGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrVa 260302 : ACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGT : 260358 214 : lGlyAlaIleSerIleGlyAlaValPheThrAlaHisAlaCysGlyGlnLeuThrIle : 232 |||| !.!!|||:!!!.!||||||.!.||||||||||||||||||||||||!.!:!: lGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnVal 260359 : TGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTG : 260415 233 : IleLysArgTrpIleArgGluTyrIleAsnArgSerLysAspAsnAsnLysAsnValV : 252 :!!! !..!||||||! !|||!:!:!::!!..!|||!:!:!!!..!!.|||!!.!.! LeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaP 260416 : CTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTC : 260475 253 : alIleAsnGluIleGlyGluIleValGluTyrHisLeuArgIleLeu{As} >>>> : 268 !.!!!!.|||||||||! !|||||||||:!!||||||||| !|||{!.} roPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeu{Th}++ 260476 : CTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC{AC}gt..... : 260527 269 : Target Intron 1 >>>> {n}PheIleGluGlyIleGluAspValLeuAsnArg : 279 257 bp {!}||||||..! !!||||||||||||:!!|||||| ++{r}PheIleSerArgIleGluAspValMetAsnArg 260528 : ....................ag{C}TTCATATCGCGTATCGAGGATGTGATGAACCGG : 260813 280 : PheCysPheMetGluLeuPheLysSerThrLeuAspIleSerMetLeuGlyTyrTyrI : 299 .!.||||||:!!|||||||||!:!!!!||||||||||||!!!:!:||||||||||||| IleCysPheLeuGluLeuPheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrI 260814 : ATATGCTTCCTGGAGTTGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATA : 260873 300 : leLeuThr >>>> Target Intron 2 >>>> GluTrpAlaAspHisAspIle : 308 |||||! ! 852 bp |||||||||!!:!!.|||||| leLeuMet++ ++GluTrpAlaGluGlnAspIle 260874 : TTCTTATGgt.........................agGAATGGGCTGAGCAAGATATA : 261752 309 : ArgAsnLeuThrThrTyrPheMetIleLeuThrSerMetSerPheAsnIlePheIleI : 328 !:!||||||:!!||||||||||||!!:|||! !:!!!!:!!!||||||:!!||||||| GlnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheIleI 261753 : CAAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAA : 261812 329 : leCysTyrIleGlyAspIleLeuMetGluGln >>>> Target Intron 3 >>> : 339 ||||||||||||||!!:||||||! !|||||| 81 bp leCysTyrIleGlyGluIleLeuThrGluGln++ 261813 : TCTGTTACATCGGTGAAATACTAACGGAACAGgt........................ : 261847 340 : > CysArgLysValGlyGluValLeuTyrMetThrAsnTrpTyrTyrLeuProTyrL : 357 ||| !|||||||||!!:|||:!!||||||||||||||||||||||||||| !!| ++CysSerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuProAspL 261848 : .agTGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACCTGATA : 261980 358 : ysAspIleLeuAspLeuIleLeuIleIleSerArg : 368 ||..!||||||||||||||||||||||||:!!||| ysSerIleLeuAspLeuIleLeuIleIleAlaArg 261981 : AAAGTATCCTTGATTTGATTTTGATCATTGCACGA : 262015 vulgar: AmOr31 0 368 . KQ414889.1 259721 262015 + 1263 M 267 801 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259722 262015 1263 + . gene_id 2 ; sequence AmOr31 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259722 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259722 260524 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262015 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262015 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259722 262015 1263 + . alignment_id 2 ; Query AmOr31 ; Align 259722 1 801 ; Align 260783 269 99 ; Align 261734 302 111 ; Align 261926 339 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1210 Query range: 0 -> 391 Target range: 256601 -> 258624 1 : MetThrSerLysSerValIleSerGluGluSerPheAspSerLeuCysAspTyrSerL : 20 ||||||!:!:!!! !!.!:!: !:!! !!:!||| ! |||! ! !!|||||||||| MetThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerL 256602 : ATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTC : 256659 21 : euGlnLeuAsnArgTrpLeuLeuLysProIleGlyAlaTrpProSerSerSerSerSe : 39 |||||||||||||||||!!!|||||||||||||||||||||||| !!|||||||||!! euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 256660 : TCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCAC : 256716 40 : rSerLysLeuGluArgIleValSerPhePheLeuIleValLeuCysTyrGlyPheIle : 58 !!!!! |||||||||! !||||||.!! !!|||! !:!!:!!|||||||||! !||| rThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIle 256717 : TACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATA : 256773 59 : LeuPheThrValIleProSerLeuPheHisIleValLeuGluAspGluAsnLeuHisM : 78 |||||||||:!!||||||!!!|||.!!|||:!! !!|||!!:|||!!:!:!!!!:!:| LeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrM 256774 : TTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAca : 256833 79 : etLysLeuLysValPheGlyProLeuSerHisTrpPheIleGlyGlyIleAsnTyrTh : 97 |||||:::||| |||||||||:!!|||||||||.!!|||.!! !! !|||||||| etLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrTh 256834 : tgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACAC : 256890 98 : rThrLeuLeuLeuGlnAsnLysGluIleGlnTyrCysValGluHisMetGlnThrAsp : 116 | !||||||||||||...|||!!:|||!::|||||||||||||||!!::!!|||||| rLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAsp 256891 : GTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGAT : 256947 117 : TrpLysIleValAsnArgAlaLysAspGlnGlnValMetMetLysTyrAlaLysIleG : 136 |||!:!!!:|||!..|||! !|||||||||||||||||||||||| !!|||!:!.!!| TrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheG 256948 : TGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCG : 257007 137 : lyArgTyrIleAlaAlaLeuCysAlaIlePheMetGlnThrGlyValLeuThrTyrCy : 155 ||||||||:!:|||.!!!!!|||||| !.!!||||||!:!||||||... ::: lyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePh 257008 : GTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttctt : 257064 156 : sValValThrAlaPheSerThrArgIleIleGluIleGlyAsnGluThrArgIleVal : 174 ||| !:!!|||.!.!:!|||..!||||||.!.:!:||||||||||||! !|||||| eValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleVal 257065 : cgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTG : 257121 175 : HisMetLeuProCysProValTyrLysGluLeuIleSerIleAspThrSerProThrA : 194 !..:!!|||||| ! !!|||||||||:!!|||:!:!:!:!!||| !|||||||||| ArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrA 257122 : CGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGA : 257181 195 : snGluIleValLeuIleSerGlnPheValSerGlyPheIleValAsnSerIleAlaVa : 213 |||||||||||:!!.!!! !||| ! !|||..!.!!|||!.!!.!!!!! !.!!|| snGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrVa 257182 : ACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGT : 257238 214 : lGlyAlaIleSerIleGlyAlaValPheThrAlaHisAlaCysGlyGlnLeuThrIle : 232 |.!! !.!!|||:!!!.!|||||||||.!!.!!||||||! !||||||||||||:!: lSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrVal 257239 : TAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTG : 257295 233 : IleLysArgTrpIleArgGluTyrIleAsnArgSerLysAspAsnAsnLysAsnValV : 252 :!!! ! !||||||! !|||!:!:!:|||..!|||!:!:!!......|||... LeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheP 257296 : CTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttc : 257355 253 : alIleAsnGluIleGlyGluIleValGluTyrHisLeuArgIleLeu{As} >>>> : 268 ..!!!.:!!||||||! !|||||||||:!!|||||||||:!:|||{!:} roPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Se}++ 257356 : ctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt..... : 257407 269 : Target Intron 1 >>>> {n}PheIleGluGlyIleGluAspValLeuAsnArg : 279 76 bp {!}||||||..! !||||||!!:|||:!!|||||| ++{r}PheIleSerTyrIleGluGluValMetAsnArg 257408 : ....................ag{T}TTCATATCATATATCGAGGAAGTGATGAACCGA : 257512 280 : PheCysPheMetGluLeuPheLysSerThrLeuAspIleSerMetLeuGlyTyrTyrI : 299 .!.||||||:!:|||||||||!:!!!!||||||! !|||!!!|||||||||||||||| IleCysPheLeuGluLeuPheArgCysThrLeuAlaIleCysMetLeuGlyTyrTyrI 257513 : ATATGTTTTTTAGAGTTGTTTAGATGCACGCTGGCTATATGCATGCTGGGATACTACA : 257572 300 : leLeuThr >>>> Target Intron 2 >>>> GluTrpAlaAspHisAspIle : 308 |||||.!! 684 bp ||||||:!! !..|||||| leLeuAla++ ++GluTrpSerThrGlnAspIle 257573 : TTCTTGCGgt.........................aggaATGGTCTACGCaagatatt : 258283 309 : ArgAsnLeuThrThrTyrPheMetIleLeuThrSerMetSerPheAsnIlePheIleI : 328 :::||||||::::::|||||||||||||||! !|||:::|||||||||||||||:::| GlnAsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValI 258284 : caaaatttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaa : 258343 329 : leCysTyrIleGlyAspIleLeuMetGluGln >>>> Target Intron 3 >>> : 339 ||||||||||||||!!:||||||! |||||| 90 bp leCysTyrIleGlyGluIleLeuThrGluGln++ 258344 : tatgttACATAGGTGAAATATTAACAGAACAGgt........................ : 258378 340 : > CysArgLysValGlyGluValLeuTyrMetThrAsnTrpTyrTyrLeuProTyrL : 357 |||!:!|||||||||!!:|||:!!|||||||||:!!||||||||||||||| !!| ++CysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspL 258379 : .agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACA : 258520 358 : ysAspIleLeuAspLeuIleLeuIleIleSerArgSerAsnAlaValIleLysIleTh : 376 || ||||||||||||||||||:!!|||:!!||||||!:!!.!|||:!!:!!||||| ysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleTh 258521 : AAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCAC : 258577 377 : rAlaGlyLysLeuThrAsnMetSerIleTyrThrPheGlyAsnVal : 391 ||||||||||... :::||||||||||||||||||.!!:!!||| rAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAspVal 258578 : CGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATGTG : 258624 vulgar: AmOr31 0 391 . KQ414889.1 256601 258624 + 1210 M 267 801 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256602 258624 1210 + . gene_id 3 ; sequence AmOr31 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256602 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256602 257404 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256602 258624 1210 + . alignment_id 3 ; Query AmOr31 ; Align 256602 1 801 ; Align 257482 269 99 ; Align 258265 302 111 ; Align 258466 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1116 Query range: 0 -> 301 Target range: 266586 -> 267558 1 : MetThrSerLysSerValIleSerGluGluSerPheAspSerLeuCysAspTyrSerL : 20 |||.!!!:!:!!|||:!!:!!! !|||! !!:!.!.:!!|||||| !!|||||||||| MetAlaAsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerL 266587 : ATGGCTAACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCC : 266644 21 : euGlnLeuAsnArgTrpLeuLeuLysProIleGlyAlaTrpProSerSerSerSerSe : 39 |||||||||||||||||!!!|||||||||||||||||||||||| !!! !||| !!! euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuTh 266645 : TGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCAC : 266701 40 : rSerLysLeuGluArgIleValSerPhePheLeuIleValLeuCysTyrGlyPheIle : 58 !||||||||||||||||||||||||!:! !|||||||||:!!|||||| !!! !||| rSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIle 266702 : ATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATA : 266758 59 : LeuPheThrValIleProSerLeuPheHisIleValLeuGluAspGluAsnLeuHisM : 78 ||||||||||||||||||!!!|||||||||:!!|||||||||||||||!:!:!!!.!! LeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgT 266759 : CTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTA : 266818 79 : etLysLeuLysValPheGlyProLeuSerHisTrpPheIleGlyGlyIleAsnTyrTh : 97 !|||:!!||||||||||||||||||||||||||||||:!!||||||||||||||||| hrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrTh 266819 : CGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACAC : 266875 98 : rThrLeuLeuLeuGlnAsnLysGluIleGlnTyrCysValGluHisMetGlnThrAsp : 116 |||||||||||||!::!:!|||||||||!:: !|||||||||||||||||||||||| rThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAsp 266876 : CACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGAT : 266932 117 : TrpLysIleValAsnArgAlaLysAspGlnGlnValMetMetLysTyrAlaLysIleG : 136 |||!:!||||||!.!||| !!:!!|||:!!|||||||||:!!||| !!|||!:!|||| TrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleG 266933 : TGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCG : 266992 137 : lyArgTyrIleAlaAlaLeuCysAlaIlePheMetGlnThrGlyValLeuThrTyrCy : 155 |||||||||||||| !!!!|||||| ||||||||| !||||||||| !||||| lyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCy 266993 : GTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTG : 267049 156 : sValValThrAlaPheSerThrArgIleIleGluIleGlyAsnGluThrArgIleVal : 174 ||||:!!|||||||||!!!! !!:!! !:!:|||:!!||||||||||||||||||||| sValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleVal 267050 : TGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTA : 267106 175 : HisMetLeuProCysProValTyrLysGluLeuIleSerIleAspThrSerProThrA : 194 |||:!!||||||||| !!|||||||||:!!:!!|||:!!:!!|||||||||||||||| HisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrA 267107 : CATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGA : 267166 195 : snGluIleValLeuIleSerGlnPheValSerGlyPheIleValAsnSerIleAlaVa : 213 ||||||||||||||:!!|||||||||||||||||||||||||||||||||! !!.!|| snGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValVa 267167 : ACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGT : 267223 214 : lGlyAlaIleSerIleGlyAlaValPheThrAlaHisAlaCysGlyGlnLeuThrIle : 232 |||||||.!!|||:!!!.!|||||||||.!!|||||||||||||||||||||!:!:!: lGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerVal 267224 : CGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTG : 267280 233 : IleLysArgTrpIleArgGluTyrIleAsnArgSerLysAspAsnAsnLysAsnValV : 252 :!:! !! !||||||!:!|||!:!:!:|||||||||!:!|||!:!|||||||||||| LeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValC 267281 : CTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTT : 267340 253 : alIleAsnGluIleGlyGluIleValGluTyrHisLeuArgIleLeu{As} >>>> : 268 !.!!:!!:!!||||||! !:!!||||||:!!|||||||||:!!|||{!:} ysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 267341 : GCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG}gt..... : 267392 269 : Target Intron 1 >>>> {n}PheIleGluGlyIleGluAspValLeuAsnArg : 279 69 bp {!}||||||! ! !!||||||..!|||:!!!:!..! ++{r}PheIleAlaArgIleGluSerValMetSerGlu 267393 : ....................ag{C}TTCATAGCACGTATCGAAAGTGTAATGAGCGAA : 267490 280 : PheCysPheMetGluLeuPheLysSerThrLeuAspIleSerMetLeuGlyTyrTyrI : 299 .!!|||||||||||||||||||||!!!|||:!!||||||!!!:!!|||.!!||||||| IleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSerTyrTyrI 267491 : ATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCTATTATA : 267550 300 : leLeuThr : 301 |||||||| leLeuThr 267551 : TCCTTACG : 267558 vulgar: AmOr31 0 301 . KQ414889.1 266586 267558 + 1116 M 267 801 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266587 267558 1116 + . gene_id 4 ; sequence AmOr31 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266587 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266587 267389 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267558 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267558 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266587 267558 1116 + . alignment_id 4 ; Query AmOr31 ; Align 266587 1 801 ; Align 267460 269 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1102 Query range: 10 -> 301 Target range: 274362 -> 275309 11 : SerPheAspSerLeuCysAspTyrSerLeuGlnLeuAsnArgTrpLeuLeuLysProI : 30 !:!|||||||||||| !!|||||||||||||||||||||||||||!!!|||||||||| AsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 274363 : AATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTA : 274420 31 : leGlyAlaTrpProSerSerSerSerSerSerLysLeuGluArgIleValSerPhePh : 49 ||||||||||||||! !:!!||| !!!!!!!!|||!!!|||||||||:!!||| !.. leGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLeuSerHisLe 274421 : TAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCt : 274477 50 : eLeuIleValLeuCysTyrGlyPheIleLeuPheThrValIleProSerLeuPheHis : 68 .|||||| ||||||||| !!|||||||||! !|||||||||||||||:!!|||||| uLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIlePheHis 274478 : tttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCAC : 274534 69 : IleValLeuGluAspGluAsnLeuHisMetLysLeuLysValPheGlyProLeuSerH : 88 |||:!!|||! !||||||!:!||||||:!!|||||||||:!!.!!|||||||||.!!| IleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyH 274535 : ATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTC : 274594 89 : isTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuGlnAsnLysGluIleGl : 107 |||||||||||||||||||||||||||||||||||||||||!::!:!|||||||||!: isTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleAr 274595 : ACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACG : 274651 108 : nTyrCysValGluHisMetGlnThrAspTrpLysIleValAsnArgAlaLysAspGln : 126 : !|||||||||||||||||||||||||||!:!||||||!.!||| !!:!!|||||| gGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAspGln 274652 : CGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAA : 274708 127 : GlnValMetMetLysTyrAlaLysIleGlyArgTyrIleAlaAlaLeuCysAlaIleP : 146 |||||||||:!!||| !!||||||||||||||||||:!!||| !!!!|||||| | GlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaP 274709 : CAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGT : 274768 147 : heMetGlnThrGlyValLeuThrTyrCysValValThrAlaPheSerThrArgIleIl : 165 |||||||| !||||||||| !|||||||||:!!|||||||||!!!! !!:!! !:! heMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGlnThrVa 274769 : TCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGT : 274825 166 : eGluIleGlyAsnGluThrArgIleValHisMetLeuProCysProValTyrLysGlu : 184 !:!!:!!|||||||||||||||! !|||||||||||||||||| !!.!||||||:!! lGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLysLys 274826 : TCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAG : 274882 185 : LeuIleSerIleAspThrSerProThrAsnGluIleValLeuIleSerGlnPheValS : 204 :!!:!!:!!:!:|||||||||||||||||||||||||||||| !||||||||||||| IleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnPheValS 274883 : ATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGT : 274942 205 : erGlyPheIleValAsnSerIleAlaValGlyAlaIleSerIleGlyAlaValPheTh : 223 ||||||||||||||||||||! !||||||||||||.!!|||:!!!.!|||||||||.! erGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAl 274943 : CGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGC : 274999 224 : rAlaHisAlaCysGlyGlnLeuThrIleIleLysArgTrpIleArgGluTyrIleAsn : 242 !|||||||||! !|||||||||!:!:!::!:! !! !||||||! !|||!:!:!:||| aAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheValAsn 275000 : GGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAAT : 275056 243 : ArgSerLysAspAsnAsnLysAsnValValIleAsnGluIleGlyGluIleValGluT : 262 !.!|||!:!|||...|||||||||||| ...::!|||||||||! !:!!||||||: HisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValValValGluH 275057 : CATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAAC : 275116 263 : yrHisLeuArgIleLeu{As} >>>> Target Intron 1 >>>> {n}PheIl : 270 !!|||||||||:!!|||{!:} 74 bp {!}||||| isHisLeuArgValLeu{Se}++ ++{r}PheIl 275117 : ATCATCTGAGGGTACTC{AG}gt.........................ag{T}TTCAT : 275214 271 : eGluGlyIleGluAspValLeuAsnArgPheCysPheMetGluLeuPheLysSerThr : 289 |! ! !!||||||||||||:!!||||||.!.|||||||||||||||||||||!!!||| eAlaArgIleGluAspValMetAsnArgIleCysPheMetGluLeuPheLysCysThr 275215 : AGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAATTGTTCAAGTGTACT : 275271 290 : LeuAspIleSerMetLeuGlyTyrTyrIleLeuThr : 301 ||||||!!:!!!|||||||||||||||||||||||| LeuAspMetCysMetLeuGlyTyrTyrIleLeuThr 275272 : CTGGATATGTGCATGCTTGGCTATTACATTCTCACG : 275309 vulgar: AmOr31 10 301 . KQ414889.1 274362 275309 + 1102 M 257 771 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274363 275309 1102 + . gene_id 5 ; sequence AmOr31 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274363 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274363 275135 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275309 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275309 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274363 275309 1102 + . alignment_id 5 ; Query AmOr31 ; Align 274363 11 771 ; Align 275211 269 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 961 Query range: 1 -> 394 Target range: 236804 -> 238796 2 : ThrSerLysSerValIleSerGluGluSerPheAspSerLeuCysAspTyrSerLeuG : 21 !.!..!|||!!!|||:!!!!!||| !:!.!. !:!! ! !!||||||||||||| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuG 236805 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCC : 236862 22 : lnLeuAsnArgTrpLeuLeuLysProIleGlyAlaTrpProSerSerSerSerSerSe : 40 ||! !||||||||| !:!!||| !||||||.!!||||||..!! !||||||!:! lnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerAsn-- 236863 : AGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGAAC-- : 236919 41 : rLysLeuGluArgIleValSerPhePheLeuIleValLeuCysTyrGlyPheIleLeu : 59 |||||||||! !:!!||| .!.|||! !|||:!!|||||| ! |||||| ----LeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeu 236920 : ----CTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTA : 236970 60 : PheThrValIleProSerLeuPheHisIleValLeuGluAspGluAsnLeuHisMetL : 79 |||:!!:!!||||||!!!! !!!.|||:!!:!!|||||| ! ! !!.!!!!:!!! !| PheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrL 236971 : TTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGA : 237030 80 : ysLeuLysValPheGlyProLeuSerHisTrpPheIleGlyGlyIleAsnTyrThrTh : 98 ||:!!|||:!!.!!||| !!|||||||||||| ! .!! !! !|||!:!||||||! ysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMe 237031 : AAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCAT : 237087 99 : rLeuLeuLeuGlnAsnLysGluIleGlnTyrCysValGluHisMetGlnThrAspTrp : 117 !|||||||||!:!..!||| |||!:::!!! ! !!.!.||||||:!!||||||||| tLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrp 237088 : GCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGG : 237144 118 : LysIleValAsnArgAlaLysAspGlnGlnValMetMetLysTyrAlaLysIleGlyA : 137 !:!! ..!...||| ::: ::::::||||||:!!||||||||||||.!!.!!| ArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerA 237145 : AGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTC : 237204 138 : rgTyrIleAlaAlaLeuCysAlaIlePheMetGlnThrGlyValLeuThrTyrCysVa : 156 ||||| ||| !! !|||.!!||||||!!:!!. !|||:!!||| !|||||||| rgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysVa 237205 : GATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGT : 237261 157 : lValThrAlaPheSerThrArgIleIleGluIleGlyAsnGluThrArgIleValHis : 175 |:!!||||||! !!!!|||! !:!!:!!! !:!!||||||:!!|||! !|||:!!!.! lMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLeuArg 237262 : TATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGC : 237318 176 : MetLeuProCysProValTyrLysGluLeuIleSerIleAspThrSerProThrAsnG : 195 :!!||||||! |||:!!||||||! !|||:!! !!:!!||||||!:! !!! !|||! ValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnA 237319 : GTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACG : 237378 196 : luIleValLeuIleSerGlnPheValSerGlyPheIleValAsnSerIleAlaValGl : 214 !:||||||:!!:!:|||||||||:!!||||||||||||!.!|||!:!! !|||:!!.! spIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSe 237379 : ACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAG : 237435 215 : yAlaIleSerIleGlyAlaValPheThrAlaHisAlaCysGlyGlnLeuThrIleIle : 233 !!.!||||||:!! !::!!.!.!.|||:!!||||||! !|||||||||!:!:!::!! rValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValVal 237436 : TGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTT : 237492 234 : LysArgTrpIleArgGluTyrIleAsnArgSerLysAspAsnAsnLysAsnValValI : 253 ! ! !! !|||..!!!:!:!:!:!:!..!:!!!:! !!.....|||:!!! ! !. MetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAspHisP 237493 : ATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATCATT : 237552 254 : leAsnGluIleGlyGluIleValGluTyrHisLeuArgIleLeu{As} >>>> Tar : 268 !!:!!|||||| ! !||||||||| ! |||||||||:!:|||{||} heAspGluIleProThrIleValGluGluHisLeuArgValLeu{As}++ 237553 : TCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTG{AA}gt........ : 237601 269 : get Intron 1 >>>> {n}PheIleGluGlyIleGluAspValLeuAsnArgPhe : 280 68 bp {|}||||||..! !!||||||! :!!:!!|||!:! ++{n}PheIleSerArgIleGluAlaMetMetAsnLysAla 237602 : .................ag{C}TTCATATCGCGCATAGAGGCAATGATGAACAAAGCG : 237701 281 : CysPheMetGluLeuPheLysSerThrLeuAspIleSerMetLeuGlyTyrTyrIleL : 300 ||||||:!!||||||.!.!:!!!!! !:!!! !:!!!!! |||||||||||||||! CysPheLeuGluLeuMetArgCysMetIleAlaValCysAlaLeuGlyTyrTyrIleP 237702 : TGTTTCCTGGAGTTAATGAGGTGCATGATAGCTGTATGCGCACTTGGATATTATATAT : 237761 301 : euThr >>>> Target Intron 2 >>>> GluTrpAlaAspHisAspIleArg : 309 !!! ! 645 bp |||||||||!!: !||| !!:! heMet++ ++GluTrpAlaGluSerAspAlaLys 237762 : TCATGgt.........................agGAATGGGCAGAGAGCGATGCTAAA : 238433 310 : AsnLeuThrThrTyrPheMetIleLeuThrSerMetSerPheAsnIlePheIleIleC : 329 ! !|||! !|||||||||:!: !|||..!:!!!!: !! !|||! !||||||:!!| IleLeuIleThrTyrPheValAlaLeuValAlaIleValSerAsnThrPheIleLeuC 238434 : ATCTTAATCACGTACTTTGTAGCACTCGTTGCTATTGTTTCTAATACATTTATACTCT : 238493 330 : ysTyrIleGlyAspIleLeuMetGluGln >>>> Target Intron 3 >>>> : 339 ||||||||.!!!!:! |||! |||||| 106 bp ysTyrIleSerGluArgLeuThrGluGln++ ++ 238494 : GTTATATCAGCGAAAGGCTGACAGAACAGgt.........................ag : 238627 340 : CysArgLysValGlyGluValLeuTyrMetThrAsnTrpTyrTyrLeuProTyrLysA : 358 ||| !|||||||||||||||:!!|||||||||:!!||||||||||||||| ! !:! CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgA 238628 : TGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAA : 238686 359 : spIleLeuAspLeuIleLeuIleIleSerArgSerAsnAlaValIleLysIleThrAl : 377 ||||||||||||||||||||||||!.!|||||||||!.!|||:!!|||:!!||||| rgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValThrAl 238687 : GAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCACCGC : 238743 378 : aGlyLysLeuThrAsnMetSerIleTyrThrPheGlyAsnValMetLysThr : 394 |||||||:!! !:!!||||||:!!||||||||||||:!!|||! :!!||| aGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThr 238744 : TGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 238796 vulgar: AmOr31 1 394 . KQ414889.1 236804 238796 + 961 M 38 114 G 2 0 M 226 678 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 33 99 5 0 2 I 0 641 3 0 2 M 37 111 5 0 2 I 0 102 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236805 238796 961 + . gene_id 6 ; sequence AmOr31 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 236805 237598 . + . KQ414889.1 exonerate:protein2genome:local exon 236805 237598 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 237599 237600 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 237599 237666 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 237665 237666 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 237667 237766 . + . KQ414889.1 exonerate:protein2genome:local exon 237667 237766 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 237767 237768 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 237767 238411 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 238410 238411 . + . intron_id 1 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 238412 238522 . + . KQ414889.1 exonerate:protein2genome:local exon 238412 238522 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238523 238524 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238523 238628 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 238627 238628 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238629 238796 . + . KQ414889.1 exonerate:protein2genome:local exon 238629 238796 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 236805 238796 961 + . alignment_id 6 ; Query AmOr31 ; Align 236805 2 114 ; Align 236919 42 678 ; Align 237668 269 99 ; Align 238412 302 111 ; Align 238629 339 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 697 Query range: 2 -> 391 Target range: 212827 -> 215022 3 : SerLysSerValIleSerGluGluSerPheAspSerLeuCysAspTyrSerLeuGlnL : 22 ..!|||! ! !:!!..!!!: !!!!:!!!:!.!! ::: |||::: !! GluLysLeuGlnValGluAspCysThrTyrGluLysArgValAsnLeuSerIleProT 212828 : GAGAAATTGCAGGTCGAAGACTGTACCTACGAGAAACGtgtaaatttaagtatacCGT : 212885 23 : euAsnArgTrpLeuLeuLysProIleGlyAlaTrpProSerSerSerSerSerSerLy : 41 !|||||||||||||||||||||! ||| !||||||..!!.!|||! ! !||| rpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspLysSerTyrValSerPr 212886 : GGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCTACGTTTCACC : 212942 42 : sLeuGluArgIleValSerPhePheLeuIleValLeuCysTyrGlyPheIleLeuPhe : 60 !:!!|||!:!! !:!!:!! !!.:!!! !..!:!!|||||||||!!.||| !!:! oIleGluLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyr 212943 : GATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTAC : 212999 61 : ThrValIleProSerLeuPheHisIleValLeuGluAspGluAsnLeuHisMetLysL : 80 !|||||||||!!! !!!.:!!:!: !!|||!!:! ||||||::: :::: LeuValIleProCysSerLeuTyrValPheLeuAspValGluAsnIlePheLysGluI 213000 : CTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaagaga : 213059 81 : euLysValPheGlyProLeuSerHisTrpPheIleGlyGlyIleAsnTyrThrThrLe : 99 !!:!!:!!|||||| !!!!:!! !!! ! !!.! ! !!.||| !:!!|| leGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLe 213060 : TCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTT : 213116 100 : uLeuLeuGlnAsnLysGluIleGlnTyrCysValGluHisMetGlnThrAspTrpLys : 118 |:!!|||!!...! ! !!:|||!:: |||||||||||||||:!! !||||||||| uIleLeuHisGlyAspAspIleArgThrCysValGluHisMetLysTyrAspTrpLys 213117 : GATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAG : 213173 119 : IleValAsnArgAlaLysAspGlnGlnValMetMetLysTyrAlaLysIleGlyArgT : 138 ! !:!!!..!.!! !:!!|||:!!:!!:!!||| ! ! !!|||!...!!|||!:! AsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysA 213174 : AATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGA : 213233 139 : yrIleAlaAlaLeuCysAlaIlePheMetGlnThrGlyValLeuThrTyrCysValVa : 157 |||!.!.!!:!!||||||.!!|||||| ! |||||| !! ! !|||! !:!!|| rgIleValThrIleCysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuVa 213234 : GGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGT : 213290 158 : lThrAlaPheSerThrArgIleIleGluIleGlyAsnGluThrArgIleValHisMet : 176 |..! !!.!!|||.!! !! !!!:! ! ! !:!! !.! !! ! !!...... lValProIleSerAlaAspLysMetValAlaGluAspLeuAsnValThrPheArgGln 213291 : CGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAA : 213347 177 : LeuProCysProValTyrLysGluLeuIleSerIleAspThrSerProThrAsnGluI : 196 :!! ! !||||||! !:! :!!:!!..!:!! !||||||..!||||||| MetValValProValSerArgPheIleValAspValArgTyrSerProValAsnGluI 213348 : ATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGA : 213407 197 : leValLeuIleSerGlnPheValSerGlyPheIleValAsnSerIleAlaValGlyAl : 215 || !!!!!:!:! !|||.!!:!!:!!||| ! :!::!!:!!:!!|||||||||! !|| lePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAl 213408 : TATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGC : 213464 216 : aIleSerIleGlyAlaValPheThrAlaHisAlaCysGlyGlnLeuThrIleIleLys : 234 | !|||:!:!.!|||||||||.!!!.!|||||||||||||||:!! !|||:!:! ! aCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMet 213465 : TTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATG : 213521 235 : ArgTrpIleArgGluTyrIleAsnArgSerLysAspAsnAsnLysAsnValValIleA : 254 !!!|||:!:..!.!.! |||:!! !!!!!:!!|||! !:!|||||| ||| !: SerTrpLeuGluHisLeuIleAspGlyArgGluAspMetSerLysAsn---ValAspA 213522 : AGCTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGCAAGAAT---GTGGACG : 213578 255 : snGluIleGlyGluIleValGluTyrHisLeuArgIleLeu{As} >>>> Target : 268 !!..!|||!.!! ||||||.!. ! |||:!!|||||||||{!!} 8 spArgIleAlaValIleValAsnGlnHisValArgIleLeu{Ly}++ 213579 : ACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTG{AA}gt........... : 213624 269 : Intron 1 >>>> {n}PheIleGluGlyIleGluAspValLeuAsnArgPheCys : 281 40 bp {.}|||:!!||| !:!:||| ! !.!|||...!:! ! ! ! ++{s}PheLeuGluLeuValGluLysAlaLeuArgGlnValSer 213625 : ..............ag{A}TTCTTAGAGCTCGTGGAGAAAGCACTTCGGCAAGTATCT : 214499 282 : PheMetGluLeuPheLysSerThrLeuAspIleSerMetLeuGlyTyrTyrIleLeuT : 301 ||| ||||||!!. !!!!|||:!!:!!:!!!!!:!::!!||||||||||||:!!| PheAlaGluLeuLeuValCysThrValAsnLeuCysLeuValGlyTyrTyrIleIleT 214500 : TTCGCTGAATTATTAGTATGCACGGTGAATCTCTGTCTCGTTGGATATTACATAATAA : 214559 302 : hr >>>> Target Intron 2 >>>> GluTrpAlaAspHisAspIleArgAsn : 310 || 68 bp |||||| !...:!!:!!:!!! !!.! hr++ ++GluTrpAsnSerAsnAsnLeuThrThr 214560 : CGgt.........................aggAATGGAATTCGAACAATTTAACAACT : 214654 311 : LeuThrThrTyrPheMetIleLeuThrSerMetSerPheAsnIlePheIleIleCysT : 330 !..!|||||| ! :!!:!:! !! !|||::::::|||||||||||||||...|||| ThrValThrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysT 214655 : ACAGTAACTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgtt : 214714 331 : yrIleGlyAspIleLeuMetGluGln >>>> Target Intron 3 >>>> Cys : 339 ||||||||!!::!!:!! |||||| 123 bp ||| yrIleGlyGluLeuValSerGluGln++ ++Cys 214715 : aCATAGGCGAGCTTGTGTCTGAACAGgt.........................agTGC : 214864 340 : ArgLysValGlyGluValLeuTyrMetThrAsnTrpTyrTyrLeuProTyrLysAspI : 359 !:!|||||||||||||||! !||||||! !.!.|||||| |||||| !!!. ! ! LysLysValGlyGluValSerTyrMetIleGluTrpTyrArgLeuProGlyAsnLysL 214865 : AAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAA : 214924 360 : leLeuAspLeuIleLeuIleIleSerArgSerAsnAlaValIleLysIleThrAlaGl : 378 ||| !! !|||||||||!!::!!! !||||||:!! !:!!|||.!!|||||||| ysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSerValLysPheThrAlaGl 214925 : AGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGG : 214981 379 : yLysLeuThrAsnMetSerIleTyrThrPheGlyAsnVal : 391 |!!.:!!..!.!.:!!|||||| !||||||.!!!:!||| yAsnMetValGluLeuSerIleSerThrPheSerSerVal 214982 : AAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215022 vulgar: AmOr31 2 391 . KQ414889.1 212827 215022 + 697 M 248 744 G 1 0 M 16 48 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 M 33 99 5 0 2 I 0 64 3 0 2 M 37 111 5 0 2 I 0 119 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212828 215022 697 + . gene_id 7 ; sequence AmOr31 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212828 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 212828 213621 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212828 215022 697 + . alignment_id 7 ; Query AmOr31 ; Align 212828 3 744 ; Align 213572 252 48 ; Align 214463 269 99 ; Align 214630 302 111 ; Align 214864 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 619 Query range: 7 -> 401 Target range: 284493 -> 287252 8 : SerGluGluSerPheAspSerLeuCysAspTyrSerLeuGlnLeuAsnArgTrpLeuL : 27 !!!!!:..!!!!!::|||!!! !!! ||||||:!!|||:!!|||||||||!!!| ThrAspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheL 284494 : ACCGATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTC : 284551 28 : euLysProIleGlyAlaTrpProSerSerSerSerSerSerLysLeuGluArgIleVa : 46 ||||||||||||||!.!|||||| !||| !!!! !!!!! ||||||!:!||| euLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSe 284552 : TCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAG : 284608 47 : lSerPhePheLeuIleValLeuCysTyrGlyPheIleLeuPheThrValIleProSer : 65 !||| ! !!||| :!!:!! !!! ! !.!.||| !||| !:!!:!!|||!!! rSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCys 284609 : TTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGC : 284665 66 : LeuPheHisIleValLeuGluAspGlu<->AsnLeuHisMetLysLeuLysValPheG : 84 !.!. !! !||||||!!: ! :!!||| !!! !|||:!!|||:!!.!!| AlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleG 284666 : GCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCG : 284725 85 : lyProLeuSerHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuGlnAs : 103 ||||||||||| !!! .!.!!:!.!!.!|||!!.||| !! !|||:!!! !!::.. lyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGl 284726 : GTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGG : 284782 104 : nLysGluIleGlnTyrCysValGluHisMetGlnThrAspTrpLysIleVal<-><-> : 121 ! :!!||| ! ||||||:!! !!!!:!::.!!||||||...:!!..! yGlyLysIleGlyGlnCysValLysAspIleArgAlaAspTrpSerLeuThrLeuSer 284783 : CGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCG : 284839 122 : <->AsnArgAlaLysAspGlnGlnValMetMetLysTyrAlaLysIleGlyArgTyrI : 139 !::::: :::::::::::::::|||! ! ! !|||!:!|||||||||! !: HisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerL 284840 : CATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTT : 284899 140 : leAlaAlaLeuCysAlaIlePheMetGlnThrGlyValLeuThrTyrCysValValTh : 158 !:||| !!!!|||||| !|||||| ! :!!|||! !!!! !||| !..!|||! euAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMe 284900 : TGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGAT : 284956 159 : rAlaPheSerThrArgIleIleGluIleGlyAsnGluThrArgIleValHisMetLeu : 177 ! !!!!.!!!||| ! !! |||||| ! !!!:!.!..!! !|||... ! ! tProLeuCysThrValArgThrGluIle---IleAspAsnGluThrValArgSerGln 284957 : GCCGTTGTGCACAGTACGCACGGAGATC---ATCGACAACGAGACCGTGAGATCTCAA : 285010 178 : ProCysProValTyrLysGluLeuIleSerIleAspThrSerProThrAsnGluIleV : 197 !!! !|||:!!|||:::! |||:!!..! !|||||||||:!! !||||||| AlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleV 285011 : GCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCG : 285070 198 : alLeuIleSerGlnPheValSerGlyPheIleValAsnSerIleAlaValGlyAlaIl : 216 ||! !.!!! !|||! !:!!:!!!.!|||:!!:!! !!|||:!!.!!||||||||| alGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCy 285071 : TGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTG : 285127 217 : eSerIleGlyAlaValPheThrAlaHisAlaCysGlyGlnLeuThrIleIleLysArg : 235 !|||:!:!.!|||||||||..! !|||!.!|||||||||!!!! !|||:!! !! ! sSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThr 285128 : CAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACA : 285184 236 : TrpIleArgGluTyrIleAsnArgSerLysAsp<->AsnAsnLysAsnValValIleA : 254 !:!: !:!! !:!!:!! !! !|||! !!.... !!:!..! ! !. LysLeuAspLysLeuValAspGlyValLysGlyArgLysGlyLeuSerThrHisGluG 285185 : AAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAAC : 285244 255 : snGluIleGlyGluIleValGluTyrHisLeuArgIleLeu{As} >>>> Target : 268 !...!:!:|||!!:|||:!!|||:!!||||||!:!||||||{..} 14 lnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 285245 : AACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt........... : 285290 269 : Intron 1 >>>> {n}PheIleGluGlyIleGluAspValLeuAsnArgPheCys : 281 11 bp {!}||||||..! !||||||! :!!||||||..!.!.||| ++{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCys 285291 : ..............ag{T}TTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATGT : 286736 282 : PheMetGluLeuPheLysSerThrLeuAspIleSerMetLeuGlyTyrTyrIleLeuT : 301 |||:!:|||:!!.!! !!!||||||:!!|||!!!.!.||||||||||||:!!|||| PheValGluValIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeuT 286737 : TTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTACTGA : 286796 302 : hr >>>> Target Intron 2 >>>> GluTrpAlaAspHisAspIleArgAsn : 310 || 80 bp ||||||! !.!. !!!:! !! !... hr++ ++GluTrpGluGlnSerGluThrIleGly 286797 : CGgt.........................agGAATGGGAGCAAAGTGAAACTATAGGA : 286903 311 : LeuThrThrTyrPheMetIleLeuThrSerMetSerPheAsnIlePheIleIleCysT : 330 !! !||||||! !! !:!:|||..!|||.!.!!!||||||:!!||||||:!!|||| ThrIleThrTyrCysThrLeuLeuValSerPheThrPheAsnValPheIleLeuCysT 286904 : ACGATCACGTATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTT : 286963 331 : yrIleGlyAspIleLeuMetGluGln >>>> Target Intron 3 >>>> Cys : 339 ||||||||!!:|||||| |||||| 74 bp ||| yrIleGlyGluIleLeuSerGluGln++ ++Cys 286964 : ACATCGGTGAAATTCTCTCCGAACaggt.........................agtGC : 287064 340 : ArgLysValGlyGluValLeuTyrMetThrAsnTrpTyrTyrLeuProTyrLysAspI : 359 !||||||||| ! ! !||||||! !:!!|||||| !|||||| ||| LeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrA 287065 : TTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAG : 287124 360 : leLeuAspLeuIleLeuIleIleSerArgSerAsnAlaValIleLysIleThrAlaGl : 378 !! !! !||||||||||||.!!:!! !||||||:!! !||||||:!!|||||||| laGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGl 287125 : CTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGG : 287181 379 : yLysLeuThrAsnMetSerIleTyrThrPheGlyAsnValMetLysThrThrPheThr : 397 ||||:!!! !:!!:!:|||:!! !!:!||| !!!:!|||! ! ! !!.!!!.:!! yLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSer 287182 : AAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCC : 287238 398 : TyrPheAsnLeu : 401 |||!:!:!!||| TyrTyrHisLeu 287239 : TATTATCATTTG : 287252 vulgar: AmOr31 7 401 . KQ414889.1 284493 287252 + 619 M 67 201 G 0 3 M 46 138 G 0 9 M 47 141 G 1 0 M 78 234 G 0 3 M 21 63 S 0 2 5 0 2 I 0 1407 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284494 287252 619 + . gene_id 8 ; sequence AmOr31 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284494 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284494 285287 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286698 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284494 287252 619 + . alignment_id 8 ; Query AmOr31 ; Align 284494 8 201 ; Align 284698 75 138 ; Align 284845 121 141 ; Align 284986 169 234 ; Align 285223 247 63 ; Align 286700 269 99 ; Align 286879 302 111 ; Align 287064 339 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 524 Query range: 16 -> 270 Target range: 232456 -> 233215 17 : AspTyrSerLeuGlnLeuAsnArgTrpLeuLeuLysProIleGlyAlaTrpProSerS : 36 !!:||||||:!!|||:!!|||||||||!!!|||! !|||!!:|||||||||||| !! GluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgV 232457 : GAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTG : 232514 37 : erSerSerSerSerLysLeuGluArgIleValSerPhePheLeuIleValLeuCysTy : 55 !!!!..!!!!|||!:! !:!!!:!:!!:!!:!! .!.|||! !:!! !|||:! alThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHi 232515 : TTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCA : 232571 56 : rGlyPheIleLeuPheThrValIleProSerLeuPheHisIleValLeuGluAspGlu : 74 !..!.!.!!::!!! !:!!:!!:!!|||!!!:!!.!. !|||:!!!!!|||||| ! sSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThr 232572 : TTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACG : 232628 75 : AsnLeuHisMetLysLeuLysValPheGlyProLeuSerHisTrpPheIleGlyGlyI : 94 !:!|||.!. !:!:!!||| !.!!||||||:!!||||||!::.!.!!:|||! !: SerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluL 232629 : AGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAAT : 232688 95 : leAsnTyrThrThrLeuLeuLeuGlnAsnLysGluIleGlnTyrCysValGluHisMe : 113 !:|||||| ! !|||||| !:!! !!.!!:|||! ||||||||||||!!.:! euAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnVa 232689 : TGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGT : 232745 114 : tGlnThrAspTrpLysIleValAsnArgAlaLysAspGlnGlnValMetMetLysTyr : 132 !:!! !||||||::!! !|||!!.!:! !! !!!::.!.:!!|||:!!||| !! lLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsn 232746 : GAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAAC : 232802 133 : AlaLysIleGlyArgTyrIleAlaAlaLeuCysAlaIlePheMetGlnThrGlyValL : 152 ||||||:!!||||||! ||||||..!:!!..!|||.!!! !|||!!.||||||||| AlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValG 232803 : GCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCG : 232862 153 : euThrTyrCysValValThrAlaPheSerThrArgIleIleGluIleGlyAsnGluTh : 171 !:!! !! :!!||||||!.!.!! !!! !!!!! .!! ! :!:|||||||||!: lySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSe 232863 : GCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAG : 232919 172 : rArgIleValHisMetLeuProCysProValTyrLysGluLeuIleSerIleAspThr : 190 ! ! :!!:!! !||||||||| !! !!|||! !:!!|||!!:..!! ! ! rTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPhe 232920 : TTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTC : 232976 191 : SerProThrAsnGluIleValLeuIleSerGlnPheValSerGlyPheIleValAsnS : 210 ||||||||||||||||||:!!!!!:!! !|||! !:!!||||||||||||||||||| SerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnS 232977 : AGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACT : 233036 211 : erIleAlaValGlyAlaIleSerIleGlyAlaValPheThrAlaHisAlaCysGlyGl : 229 ||:!!.!!||||||||| !.!!:!!|||||||||.!..!! !|||||||||||||| erValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGl 233037 : CCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACA : 233093 230 : nLeuThrIleIleLysArgTrpIleArgGluTyrIleAsnArgSerLysAspAsnAsn : 248 ||||!.!:!::!:! ! ! :!: !!!:! :!::!! :!!|||! .!..!. nLeuAsnValValMetSerLysLeuAspAspLeuValAsp---AlaLysGlyGlnGlu 233094 : GCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGAC---GCGAAAGGGCAGGAG : 233147 249 : LysAsnValValIleAsnGluIleGlyGluIleValGluTyrHisLeuArgIleLeuA : 268 :!!!..|||!.! !..:!!:!!||| |||||||||:!!|||||||||! !|||! GluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeuA 233148 : GAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTAA : 233207 269 : snPheIle : 270 ..!:!:!: rgTyrLeu 233208 : GGTATTTG : 233215 vulgar: AmOr31 16 270 . KQ414889.1 232456 233215 + 524 M 226 678 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232457 233215 524 + . gene_id 9 ; sequence AmOr31 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232457 233215 . + . KQ414889.1 exonerate:protein2genome:local exon 232457 233215 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 232457 233215 524 + . alignment_id 9 ; Query AmOr31 ; Align 232457 17 678 ; Align 233135 244 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 441 Query range: 8 -> 273 Target range: 221351 -> 222143 9 : GluGluSerPheAspSerLeuCysAspTyrSerLeuGlnLeuAsnArgTrpLeuLeuL : 28 ||| ! ..!!:! ! !!! ! ! ! |||:!!||||||!:!||||||:!!|||| GluTyrAspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuL 221352 : GAATACGATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGA : 221409 29 : ysProIleGlyAlaTrpProSerSerSerSerSerSerLysLeuGluArgIleValSe : 47 |||||||||||!.!||||||!:!|||:!!!:!! !|||! !:!!|||||| !:!!! ysProIleGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTy 221410 : AGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTA : 221466 48 : rPhePheLeuIleValLeuCysTyrGlyPheIleLeuPheThrValIleProSerLeu : 66 !!::.!.:!!! !|||:!!||||||.!!.!.||| !||| !:!!:!!|||!!! ! rTrpLeuIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSer 221467 : CTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGC : 221523 67 : PheHisIleValLeuGluAspGluAsnLeuHisMetLysLeuLysValPheGlyProL : 86 .!!:!!:!::!!||||||! |||:!!:!!:!!! !:!:!!|||:!!!!.||||||| LeuTyrValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProL 221524 : CTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGT : 221583 87 : euSerHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuGlnAsnLysGl : 105 ||||| !!! ! !!:!.! !:!!!!.||| ! !|||:!!||| ! .!.!!.!! euSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAs 221584 : TGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGA : 221640 106 : uIleGlnTyrCysValGluHisMetGlnThrAspTrpLysIleValAsnArgAlaLys : 124 :|||!:: ! |||:!!|||!.!!!::!! !|||||||||! !:!!!.! !:!!||| pIleArgGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLys 221641 : CATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAG : 221697 125 : AspGlnGlnValMetMetLysTyrAlaLysIleGlyArgTyrIleAlaAlaLeuCysA : 144 |||:!!.!.:!!|||!!::!! !!|||! .!!|||||| :!: ! !:!!|||. AspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysT 221698 : GATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCA : 221757 145 : laIlePheMetGlnThrGlyValLeuThrTyrCysValValThrAlaPheSerThrAr : 163 !!.!!|||||| ! !:!||| ::: ||| ::!!.!! ! !!||||||..! ! hrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGl 221758 : CATTTTTCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGG : 221814 164 : gIleIleGluIleGlyAsnGluThrArgIleValHisMetLeuProCysProValTyr : 182 !! !||| !:!! ... :!! !! !||| !!! yLysIleProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSer 221815 : TAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCG : 221871 183 : LysGluLeuIleSerIleAspThrSerProThrAsnGluIleValLeuIleSerGlnP : 202 !:! :!!:!!..!! ! !||||||..!|||||||||:!!!!! !|||. ArgPheIleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnI 221872 : AGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAA : 221931 203 : heValSerGlyPheIleValAsnSerIleAlaValGlyAlaIleSerIleGlyAlaVa : 221 !!:!!:!!||| !:!::!!:!!||||||.!! !!.!||| !|||:!:! !|||:! leMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMe 221932 : TTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTAT : 221988 222 : lPheThrAlaHisAlaCysGlyGlnLeuThrIleIleLysArgTrpIleArgGluTyr : 240 !|||.!!!.!|||||||||||||||:!! !:!::!:! !!!!|||:!:!:!.!.! tPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeu 221989 : GTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTG : 222045 241 : IleAsnArgSerLysAspAsnAsnLysAsnValValIleAsnGluIleGlyGluIleV : 260 |||||| !! !! !|||! !!!.||| ||| !!....!|||!.!:!!|||| IleAsnGlyArgAlaAspMetCysAsnAsn---ValAspArgArgIleAlaLysIleV 222046 : ATCAACGGCCGGGCGGATATGTGTAACAAC---GTGGATAGGAGAATAGCGAAGATTG : 222102 261 : alGluTyrHisLeuArgIleLeuAsnPheIleGluGlyIle : 273 ||.!. ! |||:!!|||||||||.!.!:!:!!... !!||| alAsnGlnHisValArgIleLeuGlnTyrValArgCysIle 222103 : TGAATCAACACGTTCGAATATTGCAGTATGTACGTTGTATC : 222143 vulgar: AmOr31 8 273 . KQ414889.1 221351 222143 + 441 M 242 726 G 1 0 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221352 222143 441 + . gene_id 10 ; sequence AmOr31 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221352 222143 . + . KQ414889.1 exonerate:protein2genome:local exon 221352 222143 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221352 222143 441 + . alignment_id 10 ; Query AmOr31 ; Align 221352 9 726 ; Align 222078 252 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 429 Query range: 2 -> 270 Target range: 217129 -> 217930 3 : SerLysSerValIleSerGluGluSerPheAspSerLeuCysAspTyrSerLeuGlnL : 22 ..!:!!||| !! !!!!!!: ! ...::::::... ::: |||:!!|||! GluGlnSerProArgThrAspTyrGluTyrGluLysAsnIleAsnLeuSerIleGlnT 217130 : GAACAATCCCCCAGAACCGACTACGAgtacgagaaaaatataaatctcaGTATCCAAT : 217187 23 : euAsnArgTrpLeuLeuLysProIleGlyAlaTrpProSerSerSerSerSerSerLy : 41 !|||||||||||||||||||||!!:||| !||||||!:!||| !!!!!!!!!!!!: rpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnSerArgThrThrThrAr 217188 : GGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACTCACGTACCACCACCAG : 217244 42 : sLeuGluArgIleValSerPhePheLeuIleValLeuCysTyrGlyPheIleLeuPhe : 60 !! !..!!:!|||:!!! ! .!.:!!! !!.!||||||||||||!!.||| !||| gSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPhe 217245 : ATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTT : 217301 61 : ThrValIleProSerLeuPheHisIleValLeuGluAspGluAsnLeuHisMetLysL : 80 ! !!:!!|||!!!! !.!.:!!:!: !!||||||! !|||:!!|||:!! |||| LeuPheValProCysSerMetTyrValPheLeuGluValGluAspLeuTyrAspLysL 217302 : CTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGT : 217361 81 : euLysValPheGlyProLeuSerHisTrpPheIleGlyGlyIleAsnTyrThrThrLe : 99 |||||:!!||||||||||||! ! !!! ! !!:!.! !:!!!!.||| !:!!|| euLysLeuPheGlyProLeuIlePheCysValMetAlaPheValLysTyrTyrSerLe 217362 : TGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCT : 217418 100 : uLeuLeuGlnAsnLysGluIleGlnTyrCysValGluHisMetGlnThrAspTrpLys : 118 |:!!:!!!!.!!. !!!:|||!:: ! ||||||..!...!!::!! !||||||!:! uIleValHisLysAlaAspIleArgGluCysValArgArgIleGluArgAspTrpArg 217419 : GATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGG : 217475 119 : IleValAsnArgAlaLysAspGlnGlnValMetMetLysTyrAlaLysIleGlyArgT : 138 ! !|||!.. !!! !||||||::!:!!!.!|||!!: ! !!|||!!..!!|||||| AsnValArgCysGluLysAspArgGluAlaMetIleValAsnAlaAsnPheGlyArgL 217476 : AATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTA : 217535 139 : yrIleAlaAlaLeuCysAlaIlePheMetGlnThrGlyValLeuThrTyrCysValVa : 157 ! :!:!.! !||||||.!!.!!|||||| ! !:!||| ::: ||| ::!!. ysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAl 217536 : AATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcgttttttattacatCGC : 217592 158 : lThrAlaPheSerThrArgIleIleGluIleGlyAsnGluThrArgIleValHisMet : 176 !! ! !!.!!|||..! !!! !||| ! ! !|||! !!.!! !! ! !! ! ! aIleProIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuThrPheIlePro 217593 : TATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCG : 217649 177 : LeuProCysProValTyrLysGluLeuIleSerIleAspThrSerProThrAsnGluI : 196 ||| !! !||| !! ||| ! :!!|||..!! ! ! !!!!||||||||||||| LeuValPheProPheThrLysTyrIleIleAspThrArgTyrThrProThrAsnGluI 217650 : TTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCTACGAACGAAA : 217709 197 : leValLeuIleSerGlnPheValSerGlyPheIleValAsnSerIleAlaValGlyAl : 215 |||||!!!.!! !|||!!.:!!:!!||| !:!::!!:!!.!!|||.!! !!.!|| leValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAl 217710 : TTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGC : 217766 216 : aIleSerIleGlyAlaValPheThrAlaHisAlaCysGlyGlnLeuThrIleIleLys : 234 | !|||:!:!.!|||!.!|||.!!!.!|||||||||||||||:!! !:!::!:! ! aCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGluValLeuMet 217767 : TTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATG : 217823 235 : ArgTrpIleArgGluTyrIleAsnArgSerLysAspAsnAsnLysAsnValValIleA : 254 !.!|||:!:!:!.!.! |||:!! !!!!! !|||! !:! :!!..!||| !. AsnTrpLeuGlnHisLeuIleAspGlyArgAlaAspMetSer---AspThrValAspG 217824 : AACTGGCTGCAACATTTAATCGACGGTAGAGCGGATATGAGC---GATACTGTGGATG : 217880 255 : snGluIleGlyGluIleValGluTyrHisLeuArgIleLeuAsnPheIle : 270 .!..!|||!.!...||||||... ! |||:!!|||||||||!!.! !:!! lyArgIleAlaSerIleValSerGlnHisValArgIleLeuLysCysVal 217881 : GTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTAAAGTGTGTA : 217930 vulgar: AmOr31 2 270 . KQ414889.1 217129 217930 + 429 M 246 738 G 1 0 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217130 217930 429 + . gene_id 11 ; sequence AmOr31 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217130 217930 . + . KQ414889.1 exonerate:protein2genome:local exon 217130 217930 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217130 217930 429 + . alignment_id 11 ; Query AmOr31 ; Align 217130 3 738 ; Align 217868 250 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 420 Query range: 4 -> 270 Target range: 226891 -> 227686 5 : SerValIleSerGluGluSerPheAspSerLeuCysAspTyrSerLeuGlnLeuAsnA : 24 |||:!! !!!|||.!...!!:!.!...!! !! :!! |||:!!|||||||||| SerLeuAlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnA 226892 : TCTCTCGCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATC : 226949 25 : rgTrpLeuLeuLysProIleGlyAlaTrpProSerSerSerSerSerSerLysLeuGl : 43 |||||||||||||||||:!!||| !|||||||||||| !!!.!||||||::!:!!! rgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGl 226950 : GTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGG : 227006 44 : uArgIleValSerPhePheLeuIleValLeuCysTyrGlyPheIleLeuPheThrVal : 62 !||| ! !!|||!::!!.:!! ! !!|||||||||!.!.!.!!: !||| !:!! yArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeu 227007 : AAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTG : 227063 63 : IleProSerLeuPheHisIleValLeuGluAspGluAsnLeuHisMetLysLeuLysV : 82 :!! !!||| !!!.:!!:!:|||||||||! :!!..! !:!!! ! !||||||: ValSerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysM 227064 : GTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAA : 227123 83 : alPheGlyProLeuSerHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLe : 101 !!.!!||||||:!!||| !!:: !!:..! !:!!!!.|||:!!! !||| !!! etIleGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPh 227124 : TGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTT : 227180 102 : uGlnAsnLysGluIleGlnTyrCysValGluHisMetGlnThrAspTrpLysIleVal : 120 !!!..!. ! !!:|||! ! |||||||||!..!!::!! !|||||||||! !:!! eHisGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIle 227181 : CCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATC : 227237 121 : AsnArgAlaLysAspGlnGlnValMetMetLysTyrAlaLysIleGlyArgTyrIleA : 140 !.. ! !:!!|||::!.!.||||||:!!! !|||||| ! !|||||| ! :!: ArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuI 227238 : AGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGA : 227297 141 : laAlaLeuCysAlaIlePheMetGlnThrGlyValLeuThrTyrCysValValThrAl : 159 !.!!:!!|||.!!.!!|||:!: !::... ::: ::: :!!|||..! ! leThrIleCysThrPhePheValPheSerSerPheValPhePheTyrIleValValPr 227298 : TCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACC : 227354 160 : aPheSerThrArgIleIleGluIleGlyAsnGluThrArgIleValHisMetLeuPro : 178 !.!!!:!.!! !!! !:!!! !! ! !:!!! !!.!!.!! ! ! !..!:!!||| oIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetPro 227355 : TATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCG : 227411 179 : CysProValTyrLysGluLeuIleSerIleAspThrSerProThrAsnGluIleValL : 198 ! !||| !! ||| :!! !..!:!! ! !|||||| !||||||||| !!! PheProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIlePheP 227412 : TTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCT : 227471 199 : euIleSerGlnPheValSerGlyPheIleValAsnSerIleAlaValGlyAlaIleSe : 217 !! !|||||||||!!!|||.!!:!::!!:!!.!!:!!.!! !!.!||| !|| heSerValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSe 227472 : TTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAG : 227528 218 : rIleGlyAlaValPheThrAlaHisAlaCysGlyGlnLeuThrIleIleLysArgTrp : 236 |!!:!.!|||:!!.!!.!!!.!|||||||||||||||:!! !:!::!: ! !||| rMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrp 227529 : TATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGG : 227585 237 : IleArgGluTyrIleAsnArgSerLysAspAsnAsnLysAsnValValIleAsnGluI : 256 :!: !!.!.! |||:!! !!!!! !|||! !:!||| ..!:!! !:!!..!| LeuGlyHisLeuIleAspGlyArgAlaAspMetSerLys---ThrLeuAspAspArgI 227586 : CTGGGACATTTGATCGACGGCAGAGCGGATATGAGCAAA---ACACTGGATGATAGAA : 227642 257 : leGlyGluIleValGluTyrHisLeuArgIleLeuAsnPheIle : 270 ||!.!...|||||| :!!|||:!!|||||||||!!.! !:!! leAlaSerIleValThrHisHisValArgIleLeuLysCysVal 227643 : TCGCTAGCATCGTCACTCACCACGTTCGAATATTGAAGTGTGTA : 227686 vulgar: AmOr31 4 270 . KQ414889.1 226891 227686 + 420 M 245 735 G 1 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226892 227686 420 + . gene_id 12 ; sequence AmOr31 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226892 227686 . + . KQ414889.1 exonerate:protein2genome:local exon 226892 227686 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226892 227686 420 + . alignment_id 12 ; Query AmOr31 ; Align 226892 5 735 ; Align 227627 251 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 374 Query range: 1 -> 267 Target range: 208164 -> 208959 2 : ThrSerLysSerValIleSerGluGluSerPheAspSerLeuCysAspTyrSerLeuG : 21 |||! !!:!..!:!!.!! !.!...!!:!!:! ! !:! ! ..!!:!!:!:!!! ThrMetArgGlnIlePheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValA 208165 : ACGATGAGACAAATATTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTC : 208222 22 : lnLeuAsnArgTrpLeuLeuLysProIleGlyAlaTrpProSerSerSerSerSerSe : 40 ::|||||| !||| !|||||| !||||||:!!||||||!!!|||! !..! !!|| rgLeuAsnValTrpThrLeuLysIleIleGlySerTrpProArgSerIleAspArgSe 208223 : GTCTGAACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTC : 208279 41 : rLysLeuGluArgIleValSerPhePheLeuIleValLeuCysTyrGlyPheIleLeu : 59 | !||||||!.!! ! ! !.!!.!!|||! !|||||| !!:!! !!!!.:!! ! rTrpLeuGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGly 208280 : CTGGTTAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGT : 208336 60 : PheThrValIleProSerLeuPheHisIleValLeuGluAspGluAsnLeuHisMetL : 79 |||! !|||||||||!!! !.!. ! :!!|||! !! !|||:!!!!!:!! : PheIleValIleProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspG 208337 : TTCATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACC : 208396 80 : ysLeuLysValPheGlyProLeuSerHisTrpPheIleGlyGlyIleAsnTyrThrTh : 98 !!||||||:!!! !.!! !!|||||| !!::.!.!!:!.! !! !!.|||..!! lnLeuLysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIl 208397 : AATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGAT : 208453 99 : rLeuLeuLeuGlnAsnLysGluIleGlnTyrCysValGluHisMetGlnThrAspTrp : 117 !:!! !:!!!::.!. !!:|||!:! ! |||||||||:!!:!::!!.!!|||||| eMetThrValArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrp 208454 : CATGACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGG : 208510 118 : LysIleValAsnArgAlaLysAspGlnGlnValMetMetLysTyrAlaLysIleGlyA : 137 !:!! !|||.!.!.!! !:!!|||::!:!!:!!|||:!! ! !!|||!...!!!.!| ArgAsnValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaA 208511 : AGAAACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCA : 208570 138 : rgTyrIleAlaAlaLeuCysAlaIlePheMetGlnThrGlyValLeuThrTyrCysVa : 156 || ! :!: !!.!:!!|||!.! !|||||| ! !||||||::: ||| :! rgLysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIl 208571 : GGAAACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaT : 208627 157 : lValThrAlaPheSerThrArgIleIleGluIleGlyAsnGluThrArgIleValHis : 175 !!.! ! !!.!!!!! ! !! :!!! ! !..!! !.! !! !... eAlaLeuProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArg 208628 : CGCTTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGA : 208684 176 : MetLeuProCysProValTyrLysGluLeuIleSerIleAspThrSerProThrAsnG : 195 ! !||| !! !|||||| !||| :!!:!:..!:!! !||||||..!|||| ArgLeuValTyrProValProLysPheIleLeuAspValArgTyrSerProValAsnG 208685 : AGGCTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATG : 208744 196 : luIleValLeuIleSerGlnPheValSerGlyPheIleValAsnSerIleAlaValGl : 214 ||||| !!! !! !|||!!.:!!|||||||||:!!!.!:!!!:!|||.!!||||| luIlePheTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGl 208745 : AGATTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGG : 208801 215 : yAlaIleSerIleGlyAlaValPheThrAlaHisAlaCysGlyGlnLeuThrIleIle : 233 |||| !.!!:!:!.!|||:!!.!!.!! !|||||||||||||||||| !|||:!: yAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeu 208802 : GGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTG : 208858 234 : LysArgTrpIleArgGluTyrIleAsnArgSerLysAspAsnAsnLysAsnValValI : 253 ! ! !|||!!:..!:!!! :!!:!! !! !!:!!|||.!..!.|||||| :!! MetSerTrpMetGluLysLeuValAspGlyArgGluAspGluGluLysAsn---LeuA 208859 : ATGTCCTGGATGGAGAAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAAT---TTGG : 208915 254 : leAsnGluIleGlyGluIleValGluTyrHisLeuArgIleLeu : 267 !.!...!:!:!.!.!.||||||||| ! |||:!!|||:!::!! spGlnArgLeuAlaAsnIleValGluGlnHisValArgValIle 208916 : ATCAGAGGTTGGCTAATATCGTGGAGCAGCATGTTCGAGTGATC : 208959 vulgar: AmOr31 1 267 . KQ414889.1 208164 208959 + 374 M 249 747 G 1 0 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208165 208959 374 + . gene_id 13 ; sequence AmOr31 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208165 208959 . + . KQ414889.1 exonerate:protein2genome:local exon 208165 208959 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208165 208959 374 + . alignment_id 13 ; Query AmOr31 ; Align 208165 2 747 ; Align 208912 252 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 355 Query range: 301 -> 397 Target range: 277371 -> 277731 302 : GluTrpAlaAspHisAspIleArgAsnLeuThrThrTyrPheMetIleLeuThrSerM : 321 ||||||:!!||| !|||:!!!:!!..:!!||||||:!!||||||||||||! !|||| GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 322 : etSerPheAsnIlePheIleIleCysTyrIleGlyAspIleLeuMetGluGln >>> : 339 || |||||||||||| !:!!||||||||||||!!:||||||! |||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 340 : > Target Intron 1 >>>> CysArgLysValGlyGluValLeuTyrMetThrA : 350 72 bp |||!:!|||||||||||||||:!!|||||||||| ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 351 : snTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLeuIleIleSerArgSe : 369 ||||||||||||||||| !!||||||||||||:!!|||:!!||||||||||||||||| snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 370 : rAsnAlaValIleLysIleThrAlaGlyLysLeuThrAsnMetSerIleTyrThrPhe : 388 |!:! ||||||||||||||||||||||||||| ...||||||:!:||||||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 389 : GlyAsnValMetLysThrThrPheThr : 397 |||:!!||| ..! ! !|||||| GlyAspValArgSerLeuLeuPheThr 277703 : GGCGATGTACGTTCACTTCTTTTTACA : 277731 vulgar: AmOr31 301 397 . KQ414889.1 277371 277731 + 355 M 37 111 5 0 2 I 0 68 3 0 2 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277731 355 + . gene_id 14 ; sequence AmOr31 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277731 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277731 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277731 355 + . alignment_id 14 ; Query AmOr31 ; Align 277372 302 111 ; Align 277555 339 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 323 Query range: 17 -> 267 Target range: 278576 -> 279338 18 : TyrSerLeuGlnLeuAsnArgTrpLeuLeuLysProIleGlyAlaTrpProSerSerS : 37 ||||||:!!|||:!!|||||||||!!!|||||||||||||||!.!|||||| !||| TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 38 : erSerSerSerLysLeuGluArgIleValSerPhePheLeuIleValLeuCysTyrGl : 56 !!!! !!!!! ||||||!:!||| !||| ! !!||| :!!:!! !!! ! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 57 : yPheIleLeuPheThrValIleProSerLeuPheHisIleValLeuGluAspGlu<-> : 75 !.!.||| !||| !:!!:!!|||!!! !.!. !! !||||||!!: ! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 76 : AsnLeuHisMetLysLeuLysValPheGlyProLeuSerHisTrpPheIleGlyGlyI : 94 :!!||| !!! !|||:!!|||:!!.!!|||||||||||| !!! !!:!.! !| AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 95 : leAsnTyrThrThrLeuLeuLeuGlnAsnLysGluIleGlnTyrCysValGluHisMe : 113 ||!!.||| !! !|||:!!! !!::..! :!!||| ! ||||||.!. !!!! leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 114 : tGlnThrAspTrpLysIleVal<-><-><->AsnArgAlaLysAspGlnGlnValMet : 129 :!::|||||||||...:!!..! ...::: :::::::::::::::||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 130 : MetLysTyrAlaLysIleGlyArgTyrIleAlaAlaLeuCysAlaIlePheMetGlnT : 149 ! ! ! !|||!:!|||||||||! !:!:||| !!!! !!||| !|||||| ! : ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 150 : hrGlyValLeuThrTyr<->CysValValThrAlaPheSerThrArgIleIleGluIl : 167 !!|||! !:!! !||| ..!|||:!! !! !|||:!!..!|||! || erGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIl 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCAT : 279039 168 : eGlyAsnGluThrArgIleValHisMetLeuProCysProValTyrLysGluLeuIle : 186 |! !||||||||| |||... ! ! !!! !|||:!!|||:::! |||:!! eAspAsnGluThr------ValArgSerGlnAlaPheProIleTyrArgGlyLeuLeu 279040 : CGACAATGAAACG------GTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTC : 279090 187 : SerIleAspThrSerProThrAsnGluIleValLeuIleSerGlnPheValSerGlyP : 206 ..! !|||||||||:!! !|||||||||! !.!!! !|||! !:!!:!!!.!| AspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaP 279091 : GATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGT : 279150 207 : heIleValAsnSerIleAlaValGlyAlaIleSerIleGlyAlaValPheThrAlaHi : 225 ||:!!:!! !!|||:!!.!!||||||||| !|||:!: !|||||||||..! !|| heValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHi 279151 : TCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCA : 279207 226 : sAlaCysGlyGlnLeuThrIleIleLysArgTrpIleArgGluTyrIleAsnArgSer : 244 |!.!|||||||||!!!! !|||:!! !! ! !:!: !:!! !|||:!! !! ! sValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyVal 279208 : CGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTG : 279264 245 : LysAspAsnAsnLys<->AsnValValIleAsnGluIleGlyGluIleValGluTyrH : 263 |||! !..!!.!.. !:!..! ! !.!...!:!:|||!!:|||:!!|||:!!| LysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisH 279265 : AAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATC : 279324 264 : isLeuArgIleLeu : 267 |||||!:!|||||| isLeuLysIleLeu 279325 : ATCTGAAGATACTG : 279338 vulgar: AmOr31 17 267 . KQ414889.1 278576 279338 + 323 M 57 171 G 0 3 M 46 138 G 0 9 M 34 102 G 0 3 M 17 51 G 2 0 M 76 228 G 0 3 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 279338 323 + . gene_id 15 ; sequence AmOr31 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278577 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279338 . + . insertions 18 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 278577 279338 323 + . alignment_id 15 ; Query AmOr31 ; Align 278577 18 171 ; Align 278751 75 138 ; Align 278898 121 102 ; Align 279003 155 51 ; Align 279054 174 228 ; Align 279285 250 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 320 Query range: 301 -> 396 Target range: 272836 -> 273191 302 : GluTrpAlaAspHisAspIleArgAsnLeuThrThrTyrPheMetIleLeuThrSerM : 321 ||||||.!!|||||||||.!!!:!!:!||||||||||||||||||||||||! !|||| GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 322 : etSerPheAsnIlePheIleIleCysTyrIleGly >>>> Target Intron 1 : 333 ||:::|||||||||||||||::!|||||||||||| 70 bp etThrPheAsnIlePheIleValCysTyrIleGly+- 272895 : TgacttttaacatttttatagtATGTTACATCGGCga..................... : 272932 334 : >>>> AspIleLeuMetGluGlnCysArgLysValGlyGluValLeuTyrMetThrA : 350 ||||||:::|||:::|||||||||:!!|||||||||| -+LysLysAsnSer***GlnCysLysLysIleGlyGluValValTyrMetThrA 272933 : ....cgaagaaaaattcttaacagtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 351 : snTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLeuIleIleSerArgSe : 369 ||||||||||||||||| !||||||||||||||||||||||||||||||||||||!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 370 : rAsnAlaValIleLysIleThrAlaGlyLysLeuThrAsnMetSerIleTyrThrPhe : 388 !!:!!.!|||||||||||||||||||||!:!:!!..! !||||||:!:||||||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 389 : GlyAsnValMetLysThrThrPhe : 396 |||:!!||| ... ||| GlyAspValArgSerGlnLeuPhe 273166 : GGCGATGTACgttctcaattattt : 273191 vulgar: AmOr31 301 396 . KQ414889.1 272836 273191 + 320 M 31 93 5 0 2 I 0 66 3 0 2 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273191 320 + . gene_id 16 ; sequence AmOr31 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272929 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272930 272931 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 272930 272999 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 272998 272999 . + . intron_id 0 ; splice_site "cg" KQ414889.1 exonerate:protein2genome:local cds 273000 273191 . + . KQ414889.1 exonerate:protein2genome:local exon 273000 273191 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273191 320 + . alignment_id 16 ; Query AmOr31 ; Align 272837 302 93 ; Align 273000 333 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 306 Query range: 7 -> 267 Target range: 289705 -> 290479 8 : SerGluGluSerPheAspSerLeuCysAspTyrSerLeuGlnLeuAsnArgTrpLeuL : 27 |||.!.!!: !!!:!!!:!!! ! !|||!!!!!!:!!||| !!.!|||:!!| SerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleL 289706 : TCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCT : 289763 28 : euLysProIleGlyAlaTrpPro<->SerSerSerSerSerSerLysLeuGluArgIl : 45 |||||||||||||| !!::||| !! !||| !!:!!|||!:!! !||||||! euLysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgTh 289764 : TGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAAC : 289820 46 : eValSerPhePheLeuIleValLeuCysTyrGlyPheIleLeuPheThrValIlePro : 64 !.!||| ! !!.||||||:!!:!!|||! !..!.!!:!!! !|||! !:!!:!!||| rAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValPro 289821 : GGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCG : 289877 65 : SerLeuPheHisIleValLeuGluAspGluAsnLeuHisMetLysLeuLysValPheG : 84 ! ! ! !|||:!!:!!!!!...|||.!.:!!:!!:!!! ! :!!||| !.!!| PheSerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuG 289878 : TTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCG : 289937 85 : lyProLeuSerHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuGlnAs : 103 ||||||||!!! !!! !!.! ! ! !.!!!!.||| ! !!!! !:!!:!!.. lyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGl 289938 : GACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGG : 289994 104 : nLysGluIleGlnTyrCysValGluHisMetGlnThrAspTrpLysIleValAsnArg : 122 !..!! !||| !||||||:!!|||!!::!!! !|||||||||!!::!!..! ! ySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAsp 289995 : TTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGAC : 290051 123 : AlaLysAspGlnGlnValMetMetLysTyrAlaLysIleGlyArgTyrIleAlaAlaL : 142 ! ! ! !!!:: :!!|||:!:!:!|||!.!! !!!:.!!||| !!:!! ! !| GluAspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysL 290052 : GAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAAC : 290111 143 : euCysAlaIlePheMetGlnThrGlyValLeuThrTyrCysValValThrAlaPheSe : 161 ||||||||||||||:!! ! ! !|||! !|||:!!||| !..!|||! ! !!!!.! euCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPh 290112 : TGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTT : 290168 162 : rThrArgIleIleGluIleGlyAsnGluThrArgIleValHisMetLeuProCysPro : 180 !:!!!:!! ! !! !! !||||||! !||| :!!... ||| !!! !||| eSerLysLysSerValAsnGlyAsnValThr------IleArgProLeuThrTyrPro 290169 : CTCGAAGAAGAGCGTGAACGGTAACGTGACT------ATCAGACCTCTAACTTATCCC : 290219 181 : ValTyrLysGluLeuIleSerIleAspThrSerProThrAsnGluIleValLeuIleS : 200 ! !|||:!!|||!!!.!!..!:!!.!.! !||||||.!! !!|||||||||!!! !! GlyTyrGluGluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysM 290220 : GGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTA : 290279 201 : erGlnPheValSerGlyPheIleValAsnSerIleAlaValGlyAlaIleSerIleGl : 219 !!!.! !|||! !! !.!.|||..! !:!|||.!!:!!!.!||| !|||:!: etHisCysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuTh 290280 : TGCACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGAC : 290336 220 : yAlaValPheThrAlaHisAlaCysGlyGlnLeuThrIleIleLysArgTrpIleArg : 238 !.!!:!!|||.!!.!!|||.!!|||||||||:!!! !||| !! !! ! !!:!:..! rThrIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGlu 290337 : GACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAG : 290393 239 : GluTyrIleAsnArgSerLysAspAsnAsnLysAsnValValIleAsnGluIleGlyG : 258 !!: ! !!!.|||.!!! ! .!.|||... |||! !:!!...:!:!.!! AspLeuThrLysArgGlyMetLeuLeuGluLysGly---ValSerAspArgLeuAlaV 290394 : GATCTGACAAAGAGAGGGATGCTGTTGGAGAAGGGA---GTGAGTGATCGTTTGGCGG : 290450 259 : luIleValGluTyrHisLeuArgIleLeu : 267 :!!|||... !|||:!!..!|||||| alValValSerGlyHisValGluIleLeu 290451 : TTGTTGTGAGCGGTCACGTGGAGATCTTG : 290479 vulgar: AmOr31 7 267 . KQ414889.1 289705 290479 + 306 M 27 81 G 0 3 M 137 411 G 2 0 M 77 231 G 1 0 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289706 290479 306 + . gene_id 17 ; sequence AmOr31 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289706 290479 . + . KQ414889.1 exonerate:protein2genome:local exon 289706 290479 . + . insertions 3 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 289706 290479 306 + . alignment_id 17 ; Query AmOr31 ; Align 289706 8 81 ; Align 289790 35 411 ; Align 290201 174 231 ; Align 290432 252 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 276 Query range: 301 -> 394 Target range: 254071 -> 254442 302 : GluTrpAlaAspHisAspIleArgAsnLeuThrThrTyrPheMetIleLeuThrSerM : 321 ||||||.!!!!: !||| !!:!! ||| !||||||.!!:!:! !|||..!:!!: GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaV 254072 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTG : 254129 322 : etSerPheAsnIlePheIleIleCysTyrIleGlyAspIleLeuMetGluGln >>> : 339 !: ! ||| |||:::||||||||||||.!!|||! |||! |||||| alValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 254130 : TTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt... : 254185 340 : > Target Intron 1 >>>> CysArgLysValGlyGluValLeuTyrMetThrA : 350 92 bp ||| !|||||||||||||||:!!|||||||||: ++CysLeuLysValGlyGluValValTyrMetThrA 254186 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 254308 351 : snTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLeuIleIleSerArgSe : 369 !!||||||||||||||| ! !:! ||||||||||||||||||||||||!!!||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSe 254309 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATC : 254365 370 : rAsnAlaValIleLysIleThrAlaGlyLysLeuThrAsnMetSerIleTyrThrPhe : 388 ||||!.!|||:!!:!!|||||||||||||||::: :::||||||:!!||||||||| rAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPhe 254366 : GAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTC : 254422 389 : GlyAsnValMetLysThr : 394 |||:!!|||! :!!||| GlyAspValSerGluThr 254423 : GGCGATGTAAGTGAAACT : 254442 vulgar: AmOr31 301 394 . KQ414889.1 254071 254442 + 276 M 37 111 5 0 2 I 0 88 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254072 254442 276 + . gene_id 18 ; sequence AmOr31 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254072 254182 . + . KQ414889.1 exonerate:protein2genome:local exon 254072 254182 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254183 254184 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254183 254274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254273 254274 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254275 254442 . + . KQ414889.1 exonerate:protein2genome:local exon 254275 254442 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254072 254442 276 + . alignment_id 18 ; Query AmOr31 ; Align 254072 302 111 ; Align 254275 339 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 272 Query range: 17 -> 271 Target range: 204236 -> 204989 18 : TyrSerLeuGlnLeuAsnArgTrpLeuLeuLysProIleGlyAlaTrpProSerSerS : 37 |||:!! !!::!!! !:! !:!!||| ! !:!!||||||||||||! ! !! TyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaTrpProIleProV 204237 : TACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGTGGCCGATTCCAG : 204294 38 : erSerSerSerLysLeuGluArgIleValSerPhePheLeuIleValLeuCysTyrGl : 56 !!:!|||||| !!!! !|||:!!||| !! .!. ! !|||:!! !||| alAsnSerSerProPheThrArgLeuValArgArgIleGluHisValValThrTyrPh 204295 : TGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGTAGTCACCtattt : 204351 57 : yPheIleLeuPheThrValIleProSerLeuPheHisIleValLeuGluAspGluAsn : 75 ............ !:!!:!!|||.!!|||!!.:!!:!: !!|||:!!!!::!!||| eLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheLeuLysGluLysAsn 204352 : cctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAGAAC : 204408 76 : LeuHisMetLysLeuLysValPheGlyProLeuSerHisTrpPheIleGlyGlyIleA : 95 ! ! !!::::||||||:!!.!!||||||:!! !:!!!! !||| ! !.!!! GlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSerIleGlnPhePheL 204409 : GGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCATACAGTTCTTCA : 204468 96 : snTyrThrThrLeuLeuLeuGlnAsnLysGluIleGlnTyrCysValGluHisMetGl : 114 !.|||:!!..!:!!|||! !!:!! ! ! :!!|||||| ! !!:!!.!. !!!::: ysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSerLeuAsnThrIleAr 204469 : AGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGTTTGAACACCATCAG : 204525 115 : nThrAspTrpLysIleValAsnArgAlaLysAspGlnGlnValMetMetLysTyrAla : 133 ! !|||||| |||! ! !! !! !:!!:!!!:! !:!!.!. ..! ! ||| gArgAspTrp---IleGluAlaThrAspGluAsnArgLeuIlePheArgSerLysAla 204526 : ACGCGACTGG---ATAGAGGCTACGGATGAAAATCGGTTGATTTTCCGCTCGAAAGCG : 204579 134 : LysIleGlyArgTyrIleAlaAlaLeuCysAlaIlePheMetGlnThrGlyValLeuT : 153 |||||||||||| :!: ! !:!!...||| ! !||| ! !|||! !||| LysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetTyrGlyGlyGlyLeuC 204580 : AAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGTACGGCGGTGGTTTGT : 204639 154 : hrTyrCysValValThrAlaPheSerThrArgIleIleGluIleGlyAsnGluThrAr : 172 !||| ! ..!:!! ! !!!!.! !! ! !!! ||| :!! ! !!!:!.! ysTyrArgThrIleLeuProLeuLeuArgGlyThrIle---ValThrProAspAsnVa 204640 : GTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATC---GTAACACCTGATAACGT : 204693 173 : gIleValHisMetLeuProCysProValTyrLysGluLeuIleSerIleAspThrSer : 191 !! !:!!... !|||||||||||||||||| ......::: .!. !||| lThrIleArgProLeuProCysProValTyrPheValPhePheAsnGluGlnArgSer 204694 : TACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaacGAGCAACGTTCG : 204750 192 : ProThrAsnGluIleValLeuIleSerGlnPheValSerGlyPheIleValAsnSerI : 211 |||!.! !!|||||||||!!!||| !|||.!!:!!:!!||||||:!!..! !!:!!: ProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheValThrTyrAlaV 204751 : CCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTGTTACTTACGCTG : 204810 212 : leAlaValGlyAlaIleSerIleGlyAlaValPheThrAlaHisAlaCysGlyGlnLe : 230 !! ! !|||.!! !.!!!!: !!|||:!!|||..! !|||||||||.!!..!|| alIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAlaCysSerMetLe 204811 : TTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGCGTGCAGCATGCT : 204867 231 : uThrIleIleLysArgTrpIleArgGluTyrIleAsnArgSerLysAspAsnAsnLys : 249 |! !|||:!: !!.! !!!:!.!! ! !:!::!!!:!:!! |||! !.!:!! uArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAla---AspMetThrGlu 204868 : GAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCG---GACATGACCGAG : 204921 250 : AsnValValIleAsnGluIleGlyGluIleValGluTyrHisLeuArgIleLeuAsnP : 269 !..:!!||| !!..:!!|||!.!!!:||||||||||||!!. !!:!||| !!..! ThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrLysIleLysArg* 204922 : ACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGAAGATAAAGAGGT : 204981 270 : heIleGlu : 271 :!:||| **ValGlu 204982 : GAGTGGAA : 204989 vulgar: AmOr31 17 271 . KQ414889.1 204236 204989 + 272 M 100 300 G 1 0 M 47 141 G 1 0 M 78 234 G 1 0 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204237 204989 272 + . gene_id 19 ; sequence AmOr31 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204237 204989 . + . KQ414889.1 exonerate:protein2genome:local exon 204237 204989 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 204237 204989 272 + . alignment_id 19 ; Query AmOr31 ; Align 204237 18 300 ; Align 204537 119 141 ; Align 204678 167 234 ; Align 204912 246 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 272 Query range: 18 -> 213 Target range: 294690 -> 295275 19 : SerLeuGlnLeuAsnArgTrpLeuLeuLysProIleGlyAlaTrpPro<->SerSerS : 37 ||||||:!!! ! !||| !!|||||||||||||||||| !|||||| ! !! !| SerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrS 294691 : AGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACA : 294748 38 : erSerSerSerLysLeuGluArgIleValSerPhePheLeuIleValLeuCysTyrGl : 56 || !!!!|||||||||.!.!:!:!!:!!|||.!..!!||||||!.!! !||| erHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLe 294749 : GTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTT : 294805 57 : yPheIleLeuPheThrValIleProSerLeuPheHisIleValLeuGluAspGluAsn : 75 ! !:!!||||||..!:!!:!:|||!!! !!:! ! !|||!!!.!.! :::||| uThrValLeuPheValLeuValProCysGlyTyrPheCysValPheHisValLysAsn 294806 : GACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaac : 294862 76 : LeuHisMetLysLeuLysValPheGlyProLeuSerHisTrpPheIleGlyGlyIleA : 95 ::: :::|||:!!|||:!!.!.||||||:!! !:!!! .!.:!!..! !:!!! ValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuA 294863 : gtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCA : 294922 96 : snTyrThrThrLeuLeuLeuGlnAsnLysGluIleGlnTyrCysValGluHisMetGl : 114 ..|||!:! !|||:!!|||:!!!.. ! !.!!:!!:!!|||:!!||| !!!!::! rgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCysIleGluAspIleGl 294923 : GGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGA : 294979 115 : nThrAspTrpLysIleValAsnArgAlaLysAspGlnGlnValMetMetLysTyrAla : 133 !!.!|||||||||:!::!!:!!!.! !!:!! !!!:! !:!!|||!!:||| !!||| uAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIleMetIleLysAsnAla 294980 : GAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCG : 295036 134 : LysIleGlyArgTyrIleAlaAlaLeuCysAlaIlePheMetGlnThrGlyValLeuT : 153 ! !:!! !!:! !!:.!!!.! !! !.!!|||.!.!!: ! !:!..!!.!:!!: MetValThrGlnArgMetThrValAlaPheThrIleIleIleTyrSerSerAlaValS 295037 : ATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGT : 295096 154 : hrTyrCysValValThrAlaPheSerThrArgIleIleGluIleGlyAsnGluThrAr : 172 !!||| !!.!:!!... ||| :::... :!:||| ..!!!.:!!!.!!. erTyrHisAlaIleValProPhePheSerAsnAlaLeuGlu---AsnLysLysAsnAs 295097 : CGTATCACGCCATTGtgccatttttttcaaacgctTTGGAG---AACAAGAAGAATAA : 295150 173 : gIleValHisMetLeuProCysProValTyrLysGluLeuIleSerIleAspThrSer : 191 !! :!!!.! !|||||| !|||! !|||:!! !!!!:!!..! ! !!:!!||| nThrIleArgAlaLeuProIleProGlyTyrGluLeuPheValAspAlaTyrSerSer 295151 : TACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGT : 295207 192 : ProThrAsnGluIleValLeuIleSerGlnPheValSerGlyPheIleValAsnSerI : 211 |||||| !!||||||:!! !! ! !! ||||||! !..!|||.!!||||||!.!! ProThrTyrGluIleIleArgThrHisLeuPheValTyrSerPhePheValAsnLysT 295208 : CCTACCTACGAGATCATAAGAACTCATCTCTTTGTTTACTCGTTCTTCGTCAACAAAA : 295267 212 : leAlaVal : 213 !!.!||| hrGlyVal 295268 : CTGGTGTC : 295275 vulgar: AmOr31 18 213 . KQ414889.1 294690 295275 + 272 M 16 48 G 0 3 M 132 396 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294691 295275 272 + . gene_id 20 ; sequence AmOr31 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294691 295275 . + . KQ414889.1 exonerate:protein2genome:local exon 294691 295275 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294691 295275 272 + . alignment_id 20 ; Query AmOr31 ; Align 294691 19 48 ; Align 294742 35 396 ; Align 295138 168 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 271 Query range: 264 -> 394 Target range: 224128 -> 224667 265 : ArgIleLeuAsnPheIleGluGlyIleGluAspValLeuAsnArgPheCysPheMetG : 284 !:! !! !!..|||:!! ! !! !||| ! !.!|||.!.!:! ! ! |||:!!| LysCysCysArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValG 224129 : AAATGTTGCAGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGG : 224186 285 : luLeuPheLysSerThrLeuAspIleSerMetLeuGlyTyrTyrIleLeuThr >>> : 302 ||!!!.!. !!!! !|||:!!|||!!!:!:||||||||||||:!!:!!..! luPheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleVal++ 224187 : AATTTCTAGGCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTGgt... : 224242 303 : > Target Intron 1 >>>> GluTrpAlaAspHisAspIleArgAsnLeuThrT : 313 84 bp ||||||:::... !!:!!! !!:! !..!| ++GluTrpSerSerSerHisLeuThrSerAlaValT 224243 : ......................aggagtggagttcgagtcATTTAACTAGCGCGGTGA : 224357 314 : hrTyrPheMetIleLeuThrSerMetSerPheAsnIlePheIleIleCysTyrIleGl : 332 ||||||||!!::!!|||! !|||::::::|||||||||||||||...||||||||||| hrTyrPheIleLeuLeuMetSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 224358 : CTTACTTCATACTACTCATGTCtcttactttcaatatttttatattttgttacatAGG : 224414 333 : yAspIleLeuMetGluGln >>>> Target Intron 2 >>>> CysArgLysV : 342 |!!::!::!! |||||| 65 bp |||...|||: yGluLeuValAlaGluGln++ ++CysGluLysI 224415 : AGAGCTGGTAGCTGAAcaggt.........................agtgtgaaaaaa : 224509 343 : alGlyGluValLeuTyrMetThrAsnTrpTyrTyrLeuProTyrLysAspIleLeuAs : 361 ::|||::!|||! !||||||! !:!!|||||| ||| !! !!. ! ! !||| leGlyGlnValSerTyrMetIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCy 224510 : ttggacaAGTGTCGTACATGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATG : 224566 362 : pLeuIleLeuIleIleSerArgSerAsnAlaValIleLysIleThrAlaGlyLysLeu : 380 !! !||||||||||||:!!! !||||||:!! !||||||:!:|||||||||!!.:!! sCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMet 224567 : CTGCATTCTGATAATCGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATG : 224623 381 : ThrAsnMetSerIleTyrThrPheGlyAsnValMetLysThr : 394 ..!.!.:!!!!!:!! !|||||||||:!!|||! ! ||| ValGluLeuCysLeuThrThrPheGlyAspValSerIleThr 224624 : GTCGAACTGTGTCTAACCACTTTCGGTGACGTAAGTATCACA : 224667 vulgar: AmOr31 264 394 . KQ414889.1 224128 224667 + 271 M 37 111 5 0 2 I 0 80 3 0 2 M 37 111 5 0 2 I 0 61 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224129 224667 271 + . gene_id 21 ; sequence AmOr31 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224129 224239 . + . KQ414889.1 exonerate:protein2genome:local exon 224129 224239 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224240 224241 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224240 224323 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224322 224323 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224667 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224667 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224129 224667 271 + . alignment_id 21 ; Query AmOr31 ; Align 224129 265 111 ; Align 224324 302 111 ; Align 224500 339 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 252 Query range: 17 -> 267 Target range: 303196 -> 304866 18 : TyrSerLeuGlnLeuAsnArgTrpLeuLeuLysProIleGlyAlaTrpProSerSerS : 37 ||| ! !:!!! !!:!!:!|||:!!|||||| !!:!!||| !||||||:!! !! TyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTrpProAlaValL 303197 : TACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTGGCCAGCCGTGT : 303254 38 : erSerSerSerLysLeuGluArgIleValSerPhePheLeuIleValLeuCysTyrGl : 56 !..!..!!!! ! ! !!.!!:!! !! .!! !|||! !||| !! !! euAspGluThr------AlaGlyPheLeuProLysIleThrIleGlyLeuSerAsnLe 303255 : TGGACGAAACC------GCAGGATTCCTACCAAAAATCACCATTGGACTCAGTAATTT : 303305 57 : yPheIleLeuPheThrValIleProSerLeuPheHisIleValLeuGluAspGluAsn : 75 ! !!:!!||||||||||||||||||!!!:!!.!.||||||:!!!!!|||.!.:!!:!! uValLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnLysAsp 303306 : GGTTCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAAAGGAT : 303362 76 : LeuHis >>>> Target Intron 1 >>>> MetLysLeuLysValPheGlyPr : 85 ! 938 bp !!: !! !|||:!!!:!!.! ThrIle-+ +-IleLeuArgLysLeuTyrAlaTy 303363 : ACGATAat.........................aaATTTTACGTAAACTTTACGCTTA : 304330 86 : oLeuSerHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuGlnAsnLys : 104 !:!!||| ! !:! ! ! ! !.!.|||:!!! !||| ::: ||| rIleSerSerLeuTyrProPheHisArgGlnTyrSerIleLeuProCysLysLeuLys 304331 : TATTAGCTCATTATATCCCTTCCACCGACAATATTCTATACTTccttgcaaattaaaa : 304387 105 : GluIleGlnTyrCysValGluHisMetGlnThrAspTrpLysIleValAsnArgAlaL : 124 ...::: !!:! ! !! ! !!:!:...|||! !:::!! |||.!. ! !! ArgLeuValPheArg***GlyAspLeuSerThrGlyTyrGluGlnValGluSerLeuA 304388 : cgtttaGTGTTTCGATAAGGGGATCTCTCTACTGGATATGAACAGGTGGAATCTCTCA : 304447 125 : ysAspGlnGlnValMetMetLysTyrAlaLysIleGlyArgTyrIleAlaAlaLeuCy : 143 :!|||!:::!!:!!|||:!:||||||!.!:!!!!:|||||| !!:!:.!! !:!!|| rgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIleCy 304448 : GAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAATCTG : 304504 144 : sAlaIlePheMetGlnThrGlyValLeuThrTyrCysValValThrAlaPheSerThr : 162 ||||||||||||| ! ||||||! ! !! !||| !..!|||! ! !|||:!!||| sAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheAlaThr 304505 : CGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCGACC : 304561 163 : ArgIleIleGluIleGlyAsnGluThrArgIleValHisMetLeuProCysProValT : 182 !!! ! :!:! !.!. ! !.!|||! :!! ! !||| !! !|||..!| GlyThrTyr---ValAspGluTyrAsnArgThrIleLysProLeuValTyrProThrT 304562 : GGAACGTAT---GTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACCT : 304618 183 : yrLysGluLeuIleSerIleAspThrSerProThrAsnGluIleValLeuIleSerGl : 201 ||!..! |||.!!..!:!!.!.|||||||||! ! !!|||:!:|||! !.!! !!! yrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheValHi 304619 : ACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCA : 304675 202 : nPheValSerGlyPheIleValAsnSerIleAlaValGlyAlaIleSerIleGlyAla : 220 .! !:!!!!!|||!:!:!!:!! !!||||||.!!!.!|||||| !.!!:!!!.!||| sCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAla 304676 : TTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCT : 304732 221 : ValPheThrAlaHisAlaCysGlyGlnLeuThrIleIleLysArgTrpIleArgGluT : 240 :!!|||.!!.!!|||||||||||||||:!! !|||:!!! ! ! ! :!: !!!!: LeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAspL 304733 : CTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGATC : 304792 241 : yrIleAsnArgSerLysAspAsnAsnLysAsnValValIleAsnGluIleGlyGluIl : 259 !:!!|||!!!!.!:!!...::!:!! !:!! !!...!:!! !||||| euValAsnSerLysGluSerSerAspLeuAsp---------LysArgLeuIleGluIl 304793 : TTGTCAACAGCAAAGAATCATCTGATTTAGAT---------AAACGATTAATAGAAAT : 304840 260 : eValGluTyrHisLeuArgIleLeu : 267 |||||||:!!||||||||||||||| eValGluHisHisLeuArgIleLeu 304841 : TGTTGAGCATCATTTGCGAATTTTA : 304866 vulgar: AmOr31 17 267 . KQ414889.1 303196 304866 + 252 M 23 69 G 2 0 M 35 105 5 0 2 I 0 934 3 0 2 M 88 264 G 1 0 M 84 252 G 3 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303197 304866 252 + . gene_id 22 ; sequence AmOr31 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303197 303370 . + . KQ414889.1 exonerate:protein2genome:local exon 303197 303370 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 303371 303372 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 303371 304308 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304307 304308 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 304309 304866 . + . KQ414889.1 exonerate:protein2genome:local exon 304309 304866 . + . insertions 0 ; deletions 4 KQ414889.1 exonerate:protein2genome:local similarity 303197 304866 252 + . alignment_id 22 ; Query AmOr31 ; Align 303197 18 69 ; Align 303266 43 105 ; Align 304309 78 264 ; Align 304573 167 252 ; Align 304825 254 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 248 Query range: 308 -> 391 Target range: 234824 -> 235147 309 : ArgAsnLeuThrThrTyrPheMetIleLeuThrSerMetSerPheAsnIlePheIleI : 328 ......|||.!!:!!||| !!!!::!:! !..!||||||!!!|||||||||||||||. GluLysLeuAlaSerTyrValIleValTyrValSerMetThrPheAsnIlePheIleP 234825 : gaaaaattagCTTCATACGTCATCGTGTACGTGTCCATGACATTtaatatattcatat : 234882 329 : leCysTyrIleGlyAspIleLeuMetGluGln >>>> Target Intron 1 >>> : 339 ..||||||||||||!!:! |||! |||||| 74 bp heCysTyrIleGlyGluThrLeuThrGluGln++ 234883 : tttgttACATCGGAGAGACGCTTACAGAGCAGgt........................ : 234917 340 : > CysArgLysValGlyGluValLeuTyrMetThrAsnTrpTyrTyrLeuProTyrL : 357 |||! !|||||||||||| !:!!|||||||||.!.|||||| ||||||:!!| ++CysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProHisL 234918 : .agTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATA : 235043 358 : ysAspIleLeuAspLeuIleLeuIleIleSerArgSerAsnAlaValIleLysIleTh : 376 || ! !|||! !|||:!!:!!|||||||||||||||!:! !|||||||||||||| ysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleTh 235044 : AAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCAC : 235100 377 : rAlaGlyLysLeuThrAsnMetSerIleTyrThrPheGlyAsnVal : 391 ||||||||||!!! !.!.||||||:!! |||||||||:!!||| rAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235101 : CGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: AmOr31 308 391 . KQ414889.1 234824 235147 + 248 M 30 90 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234825 235147 248 + . gene_id 23 ; sequence AmOr31 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234825 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234825 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234825 235147 248 + . alignment_id 23 ; Query AmOr31 ; Align 234825 309 90 ; Align 234989 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 216 Query range: 337 -> 394 Target range: 244655 -> 244826 338 : GlnCysArgLysValGlyGluValLeuTyrMetThrAsnTrpTyrTyrLeuProTyrL : 357 |||||| !|||||||||||||||:!!|||||||||:!!||||||||||||||| ! ! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 358 : ysAspIleLeuAspLeuIleLeuIleIleSerArgSerAsnAlaValIleLysIleTh : 376 :! ||||||||||||||||||||||||!.!||||||||| !|||:!!:!!||||| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 377 : rAlaGlyLysLeuThrAsnMetSerIleTyrThrPheGlyAsnValMetLysThr : 394 ||||||||||:!! !:!!||||||:!!||||||||||||:!!|||! :!!||| rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThr 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 244826 vulgar: AmOr31 337 394 . KQ414889.1 244655 244826 + 216 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244826 216 + . gene_id 24 ; sequence AmOr31 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244826 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244826 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244826 216 + . alignment_id 24 ; Query AmOr31 ; Align 244656 338 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 216 Query range: 17 -> 163 Target range: 299689 -> 300129 18 : TyrSerLeuGlnLeuAsnArgTrpLeuLeuLysProIleGlyAlaTrpPro<->SerS : 36 |||!!!||||||:!! !!:!|||||||||||||||||||||!.!|||! ! !. TyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpArgLeuLeuA 299690 : TACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGCGATTGCTAG : 299747 37 : erSerSerSerSerLysLeuGluArgIleValSerPhePheLeuIleValLeuCysTy : 55 .!..! !!|||||||||||||||!.!:!!||||||.!! !!|||!!:..!:!!|||!: spGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMetThrIleCysPh 299748 : ATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATGACAATATGCTT : 299804 56 : rGlyPheIleLeuPheThrValIleProSerLeuPheHisIleValLeuGluAspGlu : 74 !..! !:!:!!!|||! !|||:!:|||||| ! !:!!||| !!!!!! !!!::!! eSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePhePheAlaGluLys 299805 : CTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCTTCGCGGAGAAA : 299861 75 : AsnLeuHisMetLysLeuLysValPheGlyProLeuSerHisTrpPheIleGlyGlyI : 94 !:!:!!|||:!:|||:!!|||||||||||||||:!!.!! !!! .!! !..! !: SerIleHisValLysValLysValPheGlyProValGlyPheCysLeuSerSerIleV 299862 : AGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCATCG : 299921 95 : leAsnTyrThrThrLeuLeuLeuGlnAsnLysGluIleGlnTyrCysValGluHisMe : 113 !!!!.||| ! !|||! !|||.!...! ! !.!!:!! |||:!!:!!|||:! alLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCysIleGlnHisVa 299922 : TCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGCATCCAACACGT : 299978 114 : tGlnThrAspTrpLysIleValAsnArgAlaLys--AspGlnGlnValMetMetLysT : 132 ::!!! !||| ..!::!## !!!:: !:!!|||:!!!:!| lGluArgAsp---UnkUnkUnkUnkUnkUnkArg##HisArgThrIleMetLeuArgT 299979 : CGAGAGAGAC---NNNNNNNNNNNNNNNNTTCGAATCATCGTACGATCATGTTGAGAT : 300034 133 : yrAlaLysIleGlyArgTyrIleAlaAlaLeuCysAlaIlePheMetGlnThrGlyVa : 151 ||!.!! !!:.!!||| !!:!:.!!.!!:!!||||||:!:|||:!: ! .!!|||! yrValThrMetSerArgAsnLeuThrThrValCysAlaValPheLeuTyrAlaGlyGl 300035 : ACGTGACTATGAGCAGAAATCTGACGACCGTGTGCGCCGTGTTTCTTTACGCAGGTGG : 300091 152 : lLeuThrTyrCysValValThrAlaPheSerThrArg : 163 !:!!:!!||| !..!|||! ! !|||! !:!!!:! yMetSerTyrHisThrValMetGlnPheLeuSerLys 300092 : TATGTCGTATCACACGGTGATGCAGTTCTTATCGAAG : 300129 vulgar: AmOr31 17 163 . KQ414889.1 299689 300129 + 216 M 17 51 G 0 3 M 82 246 G 1 0 M 7 21 F 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299690 300129 216 + . gene_id 25 ; sequence AmOr31 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299690 300129 . + . KQ414889.1 exonerate:protein2genome:local exon 299690 300129 . + . insertions 3 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local similarity 299690 300129 216 + . alignment_id 25 ; Query AmOr31 ; Align 299690 18 51 ; Align 299744 35 246 ; Align 299990 118 21 ; Align 300013 125 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 214 Query range: 278 -> 391 Target range: 301617 -> 302036 279 : ArgPheCysPheMetGluLeuPheLysSerThrLeuAspIleSerMetLeuGlyTyrT : 298 !.!.!!||| ::: |||:::|||||||||:!! !!.!.!.||| !! HisLeuCysAlaValIleLysPheGluSerThrLeuAsnAlaLysPheLeuArgValI 301618 : CATCTCTGCgctgtaattaaatttgaatctACTTTAAATGCAAAGTTTTTACGAGTAA : 301675 299 : yrIleLeuThrGluTrpAlaAspHisAspIleArgAsnLeuThrThrTyrPheMetIl : 317 ! !!!! !|||||| !:!! !|||! ! ! !:!! !|||!:!|||! :! le***Phe***GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLe 301676 : TTTGATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCT : 301732 318 : eLeuThrSerMetSerPheAsnIlePheIleIleCysTyrIleGlyAspIleLeuMet : 336 :|||||||||.!.!!!|||||||||||||||.!!||||||||||||!!:|||||| uLeuThrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSer 301733 : GTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCC : 301789 337 : GluGln >>>> Target Intron 1 >>>> CysArgLysValGlyGluValLe : 346 |||||| 80 bp |||!!!:!!:!!|||..!!.!! GluGln++ ++CysSerGlnIleGlySerAlaSe 301790 : GAACAGgt.........................agTGTAGCCAAATTGGTTCAGCATC : 301899 347 : uTyrMetThrAsnTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLeuIle : 365 !||| !! !:!!|||||| !!|||||| ||| !! !||||||||||||:!! rTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeu 301900 : GTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTT : 301956 366 : IleSerArgSerAsnAlaValIleLysIleThrAlaGlyLysLeuThrAsnMetSerI : 385 ! ! !! !|||.!. ! ! |||:!!||||||||||||:!!! !:!!:!:|||: SerValIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerL 301957 : AGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCT : 302016 386 : leTyrThrPheGlyAsnVal : 391 !: !!||||||.!!::!||| euAsnThrPheSerSerVal 302017 : TGAATACATTCAGCTCTGTA : 302036 vulgar: AmOr31 278 391 . KQ414889.1 301617 302036 + 214 M 60 180 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301618 302036 214 + . gene_id 26 ; sequence AmOr31 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301618 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301618 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301618 302036 214 + . alignment_id 26 ; Query AmOr31 ; Align 301618 279 180 ; Align 301878 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 212 Query range: 16 -> 235 Target range: 194168 -> 194816 17 : AspTyrSerLeuGlnLeuAsnArgTrpLeuLeuLysProIleGlyAlaTrpProSerS : 36 !!:|||:!!:!!!:!:!! !:! !||||||! !||||||||| !||||||!!!. GluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProArgG 194169 : GAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAAGGG : 194226 37 : erSerSerSerSerLysLeuGluArgIleValSerPhePheLeuIleValLeuCysTy : 55 .!..!||| ! !! !!:|||:!! ! !||| !! !! !! !:!! !!: luAspSerLeuArg------AspArgValArgLeuPheAlaGlnThrGlyValValPh 194227 : AGGATTCTCTTCGC------GACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTT : 194277 56 : rGlyPheIleLeuPheThrValIleProSerLeuPheHisIleValLeuGluAspGlu : 74 !!.!!!.!!:! !||| !:!!:!!||| !:!!.!!:!!! ! !!!!!!: !||| eAlaLeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCysGlu 194278 : CGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAG : 194334 75 : AsnLeuHisMetLysLeuLysValPheGlyProLeuSerHisTrpPheIleGlyGlyI : 94 :!!||| ! ! ! :!!||||||.!!!.! !!! ! ! ! ! .!.:!:!.! !| AspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleI 194335 : GATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCA : 194394 95 : leAsnTyrThrThrLeuLeuLeuGlnAsnLysGluIleGlnTyrCysValGluHisMe : 113 ||!!.!:! !|||:!!:!!:!!.!.!..|||||||||::!!:!|||:!! !.!.|| leLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGluMe 194395 : TCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGAT : 194451 114 : tGlnThrAspTrpLysIleValAsnArgAlaLysAspGlnGlnValMetMetLysTyr : 132 |:!!|||.!.!::!:! !|||.!. !!! !:!!|||!:!|||||||||! !!!.! ! tGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsnCys 194452 : GGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGC : 194508 133 : AlaLysIleGlyArgTyrIleAlaAlaLeuCysAlaIlePheMetGlnThrGlyValL : 152 |||||||||||||||!:!.!!.!!.!!|||! ! ! !.!! ! !|||!.!| AlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaL 194509 : GCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTT : 194568 153 : euThrTyr<->CysValValThrAlaPheSerThrArgIleIleGluIleGlyAsnGl : 170 || !!||| !:!!:!! !! !.!.||| !||||||:!!:!! ! !|||.. euProTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGluAspAsnSe 194569 : TGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAACAG : 194625 171 : uThrArgIleValHisMetLeuProCysProValTyrLysGluLeuIleSerIleAsp : 189 .|||!:!||| ||||||! ! ! ! !! ! ! !!!.!!:!!|||!!: rThrGlnIle------ProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGlu 194626 : TACTCAGATA------CCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAA : 194676 190 : ThrSerProThrAsnGluIleValLeuIleSerGlnPheValSerGlyPheIleValA : 209 !||||||! ! !!||||||..!!!!:!!||||||.!.:!!! !.!! !|||:!! AspSerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleL 194677 : GACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATAT : 194736 210 : snSerIleAlaValGlyAlaIleSerIleGlyAlaValPheThrAlaHisAlaCysGl : 228 |||! ! !||| ! !|||:!:! !|||..!.!!! ! !|||..!||||| euSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGl 194737 : TGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGG : 194793 229 : yGlnLeuThrIleIleLysArg : 235 | !!!! !:!:! !!..||| yLeuPheGluValThrSerArg 194794 : CTTGTTCGAAGTGACCAGCAGA : 194816 vulgar: AmOr31 16 235 . KQ414889.1 194168 194816 + 212 M 24 72 G 2 0 M 112 336 G 0 3 M 19 57 G 2 0 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194169 194816 212 + . gene_id 27 ; sequence AmOr31 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194169 194816 . + . KQ414889.1 exonerate:protein2genome:local exon 194169 194816 . + . insertions 3 ; deletions 4 KQ414889.1 exonerate:protein2genome:local similarity 194169 194816 212 + . alignment_id 27 ; Query AmOr31 ; Align 194169 17 72 ; Align 194241 43 336 ; Align 194580 155 57 ; Align 194637 176 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 203 Query range: 292 -> 391 Target range: 305073 -> 305783 293 : SerMetLeuGlyTyrTyrIleLeuThrGluTrpAlaAspHisAspIleArgAsnLeuT : 312 ..!.!.||| |||::: !!!:|||! !..! !:!!! ! !!:!|||| GluPheLeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuT 305074 : GAGTTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTA : 305131 313 : hrThrTyrPheMetIleLeuThrSerMetSerPheAsnIlePheIleIleCysTyrIl : 331 |||||||| :!!:!!|||! !|||:!:!!!|||||||||||||||:!!|||||||| hrThrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIl 305132 : CAACATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACAT : 305188 332 : eGlyAspIleLeuMetGlu<-> >>>> Target Intron 1 >>>> GlnCysA : 340 ||||!!:|||||||||||| 410 bp !! !!! eGlyGluIleLeuMetGluLys++ -+***SerS 305189 : TGGTGAGATTCTTATGGAAAAGgt.........................cgTAGAGCA : 305628 341 : rgLysValGlyGluValLeuTyrMetThrAsnTrpTyrTyrLeuProTyrLysAspIl : 359 !!!..|||||| ! !! !!:!|||! !!:!||||||:!!|||||| !||| || erSerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIl 305629 : GTAGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGAT : 305685 360 : eLeuAspLeuIleLeuIleIleSerArgSerAsnAlaValIleLysIleThrAlaGly : 378 |! !! !|||||||||||||||:!!! !|||!:! ! ! !||||||!:!|||||| eHisGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGly 305686 : ACATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGT : 305742 379 : LysLeuThrAsnMetSerIleTyrThrPheGlyAsnVal : 391 |||:!!..!:!!:!:|||:!!! !||||||||||||||| LysValValAspLeuSerLeuSerThrPheGlyAsnVal 305743 : AAAGTAGTTGATTTATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: AmOr31 292 391 . KQ414889.1 305073 305783 + 203 M 45 135 G 0 3 5 0 2 I 0 406 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305074 305783 203 + . gene_id 28 ; sequence AmOr31 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305074 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305074 305211 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305621 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305620 305621 . + . intron_id 0 ; splice_site "CG" KQ414889.1 exonerate:protein2genome:local cds 305622 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305622 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305074 305783 203 + . alignment_id 28 ; Query AmOr31 ; Align 305074 293 135 ; Align 305622 338 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 201 Query range: 335 -> 397 Target range: 283270 -> 283456 336 : MetGluGlnCysArgLysValGlyGluValLeuTyrMetThrAsnTrpTyrTyrLeuP : 355 .!...!||||||!:!|||||||||||||||:!!||||||||||||! !!:!||||||| PheArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuP 283271 : TTCCGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTAC : 283328 356 : roTyrLysAspIleLeuAspLeuIleLeuIleIleSerArgSerAsnAlaValIleLy : 374 || !!||||||||||||:!!|||:!!||||||||||||||||||!:! |||||||| roAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLy 283329 : CCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaa : 283385 375 : sIleThrAlaGlyLysLeuThrAsnMetSerIleTyrThrPheGlyAsnValMetLys : 393 ||||||||||...|||||| ...|||||| |||||||||! !:!!||| ..! sIleThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspValArgSer 283386 : aattaccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTACGTTCA : 283442 394 : ThrThrPheThr : 397 ! !|||||| LeuLeuPheThr 283443 : CTTCTTTTTACA : 283456 vulgar: AmOr31 335 397 . KQ414889.1 283270 283456 + 201 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283271 283456 201 + . gene_id 29 ; sequence AmOr31 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283271 283456 . + . KQ414889.1 exonerate:protein2genome:local exon 283271 283456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283271 283456 201 + . alignment_id 29 ; Query AmOr31 ; Align 283271 336 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 196 Query range: 301 -> 405 Target range: 206050 -> 207604 302 : GluTrpAlaAspHisAspIleArgAsnLeuThrThrTyrPheMetIleLeuThrSerM : 321 ||||||! !:!!:!!:!!! !! ! :!!! !..!|||.!!! !:!:! !! !||| GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 322 : etSerPheAsnIlePheIleIleCysTyrIleGlyAspIleLeuMetGluGln >>> : 339 !!!||| !:!!||||||:!!||||||||||||.!.:!!|||!!:!!:||| ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 340 : > Target Intron 1 >>>> CysArgLysValGlyGluValLeuTyrMetThrA : 350 81 bp !!.! |||||| !..!! !! !! !..!| ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 351 : snTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLeuIleIleSerArgSe : 369 |||||||| !|||||| !!!:! !! ! !..!:!!||||||||||||:!!! !|| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 370 : rAsnAlaValIleLysIleThrAlaGlyLysLeuThrAsnMetSerIleTyrThrPhe : 388 |||| ! !||||||:!!||||||||||||:!! !.!.||||||:!! !!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 389 : GlyAsn >>>> Target Intron 2 >>>> ValMetLysThrThrPheThrTy : 398 !:!! 1161 bp |||||||||..!.!!.!. !|| ThrAsp++ ++ValMetLysValAlaMetGlyTy 206391 : ACCGATgt.........................agGTAATGAAGGTGGCGATGGGATA : 207581 399 : rPheAsnLeuLeuArgHisVal : 405 |||||||:!!||||||.!.||| rPheAsnIleLeuArgGluVal 207582 : CTTCAACATACTCCGTGAAGTC : 207604 vulgar: AmOr31 301 405 . KQ414889.1 206050 207604 + 196 M 37 111 5 0 2 I 0 77 3 0 2 M 52 156 5 0 2 I 0 1157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 207604 196 + . gene_id 30 ; sequence AmOr31 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206398 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206398 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206399 206400 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206399 207559 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 207558 207559 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 207560 207604 . + . KQ414889.1 exonerate:protein2genome:local exon 207560 207604 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 207604 196 + . alignment_id 30 ; Query AmOr31 ; Align 206051 302 111 ; Align 206243 339 156 ; Align 207560 391 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 187 Query range: 279 -> 401 Target range: 280025 -> 280465 280 : PheCysPheMetGluLeuPheLysSerThrLeuAspIleSerMetLeuGlyTyrTyrI : 299 !!.|||!:!.!..!.:!! ! ! !:!!! !:!!! .!! !|||! !..!! ! : LeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerLeuSerV 280026 : TTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGTTGTCAG : 280083 300 : leLeuThrGluTrpAlaAspHisAspIleArgAsnLeuThrThrTyrPheMetIleLe : 318 !!!!! !||||||! !.!.:!!||| !! !... ! !||||||!!.|||.!!|| alPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLe 280084 : TTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCT : 280140 319 : uThrSerMetSerPheAsnIlePheIleIleCysTyrIle{G} >>>> Target I : 332 |! !|||:!:!!!||||||:!!||||||:!!|||||||||{!} 74 uIleSerLeuThrPheAsnValPheIleLeuCysTyrIle{V}++ 280141 : CATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATC{G}gt............. : 280185 333 : ntron 1 >>>> {ly}AspIleLeuMetGluGlnCysArgLysValGlyGluValL : 346 bp { !} ! !!!!:!:..! !!||| !|||||||||! ! ! +-{al}IleSerPheValSer***CysLeuLysValGlyValSerT 280186 : ............at{TT}ATAAGCTTCGTTTCATAGTGCTTAAAAGTCGGCGTGTCAA : 280298 347 : euTyrMetThrAsnTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLeuIl : 365 !||||||! !:!!|||||| !|||||| ||| ! !! !! !||||||||||| hrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIl 280299 : CTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGAT : 280355 366 : eIleSerArgSerAsnAlaValIleLysIleThrAlaGlyLysLeuThrAsnMetSer : 384 |.!!:!! !||||||:!! !||||||:!!||||||||||||:!!! !:!!:!:||| ePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSer 280356 : ATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCT : 280412 385 : IleTyrThrPheGlyAsnValMetLysThrThrPheThrTyrPheAsnLeu : 401 :!! !!:!||| !!!:!|||! ! ! !!.!!!.:!!|||!:!:!!||| LeuSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280413 : TTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: AmOr31 279 401 . KQ414889.1 280025 280465 + 187 M 52 156 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280026 280465 187 + . gene_id 31 ; sequence AmOr31 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280026 280182 . + . KQ414889.1 exonerate:protein2genome:local exon 280026 280182 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280183 280184 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280183 280256 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280255 280256 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 280257 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280257 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280026 280465 187 + . alignment_id 31 ; Query AmOr31 ; Align 280026 280 156 ; Align 280259 333 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 294 -> 393 Target range: 297439 -> 297809 295 : LeuGlyTyrTyrIleLeuThrGluTrpAlaAspHisAspIleArgAsnLeuThrThrT : 314 ||| |||:::...... !||| ! !||||||!!:! ! ! !..!||| LeuLysTyrHisPhePheGlnGlyTrpLysThrHisAspMetIlePheGlyValThrI 297440 : ttaaaatatcatttttttcaggGATGGAAAACTCACGATATGATTTTTGGGGTAACGA : 297497 315 : yrPheMetIleLeuThrSerMetSerPheAsnIlePheIleIleCysTyrIleGlyAs : 333 ! ! .!!:!! !|||!!:!!!||||||||||||:!!:!!|||:!! !|||!! leGlyGlyPheMetLeuSerIleThrPheAsnIlePheValLeuCysHisAlaGlyGl 297498 : TCGGCGGTTTCATGCTTTCGATCACTTTTAATATATTCGTATTATGTCATGCAGGTGA : 297554 334 : pIleLeuMetGluGln >>>> Target Intron 1 >>>> CysArgLysValG : 343 ::!!|||:!:|||:!! 73 bp ..!..!||| !!| uLeuLeuValGluGlu++ ++AlaGluLysPheG 297555 : ACTTCTTGTCGAGGAGgt.........................agGCTGAAAAATTCG : 297657 344 : lyGluValLeuTyrMetThrAsnTrpTyrTyrLeuProTyrLysAspIleLeuAspLe : 362 ||.!.!.! !|||! ! !.!.|||||| !!|||||| !!. !|||||||| lyAsnAlaAlaTyrAsnIleGluTrpTyrAsnLeuProProAsnArgAlaLeuAspLe 297658 : GCAATGCAGCTTATAACATCGAATGGTACAACTTACCGCCAAACAGGGCTCTCGATCT : 297714 363 : uIleLeuIleIleSerArgSerAsnAlaValIleLysIleThrAlaGlyLysLeuThr : 381 |:!:|||!!:|||.!!! !:!!!!. ! ! !:!:!!|||...||||||::: uValLeuMetIleGlyIleAlaLysPheProProArgLeuThrGlyGlyLysIlePhe 297715 : GGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCACAggtggaaaaatattc : 297771 382 : AsnMetSerIleTyrThrPheGlyAsnValMetLys : 393 ::::::|||||| !!||||||.!! !||| !:: AspIleSerIleAsnThrPheSerAlaValArgArg 297772 : gatatatCGATAAACACGTTCAGTGCCGTACGTAga : 297809 vulgar: AmOr31 294 393 . KQ414889.1 297439 297809 + 162 M 44 132 5 0 2 I 0 69 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297440 297809 162 + . gene_id 32 ; sequence AmOr31 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 297440 297571 . + . KQ414889.1 exonerate:protein2genome:local exon 297440 297571 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 297572 297573 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 297572 297644 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 297643 297644 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 297645 297809 . + . KQ414889.1 exonerate:protein2genome:local exon 297645 297809 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297440 297809 162 + . alignment_id 32 ; Query AmOr31 ; Align 297440 295 132 ; Align 297645 339 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 337 -> 400 Target range: 230244 -> 230433 338 : GlnCysArgLysValGlyGluValLeuTyrMetThrAsnTrpTyrTyrLeuProTyrL : 357 ||||||||||||||||||||| !! !||||||! !.!.|||||| ||| !! ! GlnCysArgLysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyA 230245 : CAGTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAA : 230302 358 : ysAspIleLeuAspLeuIleLeuIleIleSerArgSerAsnAlaValIleLysIleTh : 376 !. ! ! ||| !! !||||||||||||:!!! !||||||..! !! |||.!!|| snLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheTh 230303 : ACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTAC : 230359 377 : rAlaGlyLysLeuThrAsnMetSerIleTyrThrPheGlyAsnValMetLysThrThr : 395 |||||||!!.:!!..!.!.:!:|||:!! !!||||||.!!:!!|||! ! ! ! ! rAlaGlyAsnMetValGluLeuSerValAsnThrPheSerAspValSerIleIlePhe 230360 : AGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGACGTAAGTATCATATTC : 230416 396 : PheThrTyrPheAsn : 400 ! !..!||| ||| SerValTyrThrAsn 230417 : TCTGTTTACACGAAT : 230433 vulgar: AmOr31 337 400 . KQ414889.1 230244 230433 + 128 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230245 230433 128 + . gene_id 33 ; sequence AmOr31 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230245 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230245 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230245 230433 128 + . alignment_id 33 ; Query AmOr31 ; Align 230245 338 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 338 -> 391 Target range: 219512 -> 219671 339 : CysArgLysValGlyGluValLeuTyrMetThrAsnTrpTyrTyrLeuProTyrLysA : 358 |||||||||:::||||||::: !||||||! !.!.|||||| ||| !! ||| CysArgLysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysL 219513 : TGtaggaaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGA : 219570 359 : spIleLeuAspLeuIleLeuIleIleSerArgSerAsnAlaValIleLysIleThrAl : 377 ! ! ||| !:!!|||! !|||:!!! !||||||:!! !||||||:!:||||| ysLysLeuTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAl 219571 : AAAAGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGC : 219627 378 : aGlyLysLeuThrAsnMetSerIleTyrThrPheGlyAsnVal : 391 ||||!!.:!!..!.!.:!!|||||| !|||||| !:!!||| aGlyAsnMetValGluLeuSerIleSerThrPheThrAspVal 219628 : CGGAAATATGGTCGAATTGTCTATCAGCACTTTTACCGACGTG : 219671 vulgar: AmOr31 338 391 . KQ414889.1 219512 219671 + 127 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219513 219671 127 + . gene_id 34 ; sequence AmOr31 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219513 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219513 219671 127 + . alignment_id 34 ; Query AmOr31 ; Align 219513 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 290 -> 338 Target range: 210630 -> 210774 291 : AspIleSerMetLeuGlyTyrTyrIleLeuThrGluTrpAlaAspHisAspIleArgA : 310 ||||||||| !..! ! !:!:!!||| !||||||! !..! ! ||| !! !! AspIleSerSerAspSerGlnPheLeuLeu***GluTrpAspSerLysAspProIleS 210631 : GATATAAGTTCTGATTCGCAATTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCA : 210688 311 : snLeuThrThrTyrPheMetIleLeuThrSerMetSerPheAsnIlePheIleIleCy : 329 :! ! !||||||.!.:!::!!|||||||||:!:!!!|||||||||||||||.!!|| erSerLeuThrTyrIleValLeuLeuThrSerValThrPheAsnIlePheIlePheCy 210689 : GCAGTCTGACGTACATAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTG : 210745 330 : sTyrIleGlyAspIleLeuMetGluGln : 338 ||||||||||!!::!:||| |||||| sTyrIleGlyGluValLeuAlaGluGln 210746 : TTACATCGGTGAAGTGTTGGCTGAACAg : 210774 vulgar: AmOr31 290 338 . KQ414889.1 210630 210774 + 124 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210631 210774 124 + . gene_id 35 ; sequence AmOr31 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 210631 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210631 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210631 210774 124 + . alignment_id 35 ; Query AmOr31 ; Align 210631 291 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 301 -> 338 Target range: 219328 -> 219439 302 : GluTrpAlaAspHisAspIleArgAsnLeuThrThrTyrPheMetIleLeuThrSerM : 321 |||||| !...:!!|||:!!! !!:! !..!||||||.!!!!::!!|||! !|||: GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 322 : etSerPheAsnIlePheIleIleCysTyrIleGlyAspIleLeuMetGluGln : 338 !::::|||||||||||||||...||||||||||||!!:|||:!! |||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: AmOr31 301 338 . KQ414889.1 219328 219439 + 117 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219439 117 + . gene_id 36 ; sequence AmOr31 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219439 117 + . alignment_id 36 ; Query AmOr31 ; Align 219329 302 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 334 -> 394 Target range: 292380 -> 292560 335 : LeuMetGluGlnCysArgLysValGlyGluValLeuTyrMetThrAsnTrpTyrTyrL : 354 :!!:!! ! ||| !!!!!:!!:!!!.!.!.!.!! !||| |||.!.|||||| !!| ValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnL 292381 : GTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATC : 292438 355 : euProTyrLysAspIleLeuAspLeuIleLeuIleIleSerArgSerAsnAlaValIl : 373 ||||| ::! ! !! !|||:!!:!!|||:!::!!:!!! !!!!!!. ! !|| euProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIl 292439 : TGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGAT : 292495 374 : eLysIleThrAlaGlyLysLeuThrAsnMetSerIleTyrThrPheGlyAsnValMet : 392 ||||:!!||||||||||||:!! ! !:!:|||:!: !!||||||||| !||| eLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArg 292496 : CAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGT : 292552 393 : LysThr : 394 :!!:!! GluSer 292553 : GAATCA : 292560 vulgar: AmOr31 334 394 . KQ414889.1 292380 292560 + 105 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292381 292560 105 + . gene_id 37 ; sequence AmOr31 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292381 292560 . + . KQ414889.1 exonerate:protein2genome:local exon 292381 292560 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292381 292560 105 + . alignment_id 37 ; Query AmOr31 ; Align 292381 335 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 301 -> 341 Target range: 244441 -> 244561 302 : GluTrpAlaAspHisAspIleArgAsnLeuThrThrTyrPheMetIleLeuThrSerM : 321 |||||||||!!: !||| !!:!! !|||! !|||||||||!!: !|||..!:!!! GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheIleAlaLeuValAlaI 244442 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTATAGCACTCGTTGCTA : 244499 322 : etSerPheAsnIlePheIleIleCysTyrIleGlyAspIleLeuMetGluGlnCysAr : 340 !: !! !|||! !||||||:!!|||||||||.!!|||! |||! |||||| !: leValSerAsnThrPheIleLeuCysTyrIleSerAspArgLeuThrGluGlnValGl 244500 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGACAGGCTGACAGAACAGGTACA : 244556 341 : gLys : 341 !:!! nGlu 244557 : AGAG : 244561 vulgar: AmOr31 301 341 . KQ414889.1 244441 244561 + 102 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244442 244561 102 + . gene_id 38 ; sequence AmOr31 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244442 244561 . + . KQ414889.1 exonerate:protein2genome:local exon 244442 244561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244442 244561 102 + . alignment_id 38 ; Query AmOr31 ; Align 244442 302 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1604 Query range: 0 -> 413 Target range: 284472 -> 287341 1 : MetLeuValLeuLysAspSerSerSerValSerTyrSerLysAspTrpIleTyrSerV : 20 ||| !:!!:!!! ..!|||!!!..! !!!!!::..!! !||||||!!:||||||| MetAlaLeuValThrSerSerThrAspSerThrTrpAspThrAspTrpMetTyrSerV 284473 : ATGGCACTGGTCACTTCTTCAACCGATTCGACGTGGGACACGGATTGGATGTACAGCG : 284530 21 : alGlnIleAsnArgTrpLeuLeuLysAlaIleGlyIleTrpProLeuSerLeuCysVa : 39 |||||!!:|||||||||!!!|||||| !!||||||:!!|||||||||||||||||||| alGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuCysVa 284531 : TACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGT : 284587 40 : lThrThrThrGluLysIleHisSerValIleLeuThrLeuIleSerIlePheLeuIle : 58 ||||||| !||||||||| !||||||:!!|||.!!||||||||| !||||||||| lThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIle 284588 : GACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATA : 284644 59 : GlyPheLeuLeuValProCysThrLeuCysThrLeuLeuAspLysThrGlyAspLeuA : 78 |||||||||||||||||||||.!!|||||||||:!!|||||||||||||||||||||| GlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuA 284645 : GGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCG : 284704 79 : spThrLysIleLysMetIleGlyProPheSerPheCysIleMetAlaAlaIleLysTy : 97 ||||||||||||||||||||||||||.!.|||||||||!!:||||||||||||||||| spThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleLysTy 284705 : ACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTA : 284761 98 : rTyrValLeuLeuSerArgGlySerHisIleGlyLysCysIleGluAspIleArgVal : 116 ||||:!!|||:!!|||||||||.!! ! ||||||:!!|||:!::!!|||||||||!.! rTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIleArgAla 284762 : TTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCG : 284818 117 : AspTrpPheArgValSerSerHisAsnCysLeuGluAspArgLysIleMetMetGluA : 136 ||||||! !! !..! !||||||!:: |||:::|||:::||||||! !!!:! AspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMetArgAspS 284819 : GACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACA : 284878 137 : snAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGl : 155 :!|||||||||||||||||||||||||||||||||||||||||||||||||||||||| erAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGl 284879 : GCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGG : 284935 156 : yPhePheTyrThrThrValMetProLeuCysThrLysArgThrGluIleIleAspAsn : 174 |||||||||||||||||||||||||||||||||| !||||||||||||||||||||| yPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIleAspAsn 284936 : ATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAAC : 284992 175 : GluIleValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrS : 194 |||! !|||||||||||||||||||||||||||||||||||||||||||||||||||| GluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrS 284993 : GAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCA : 285052 195 : erProSerPheGluIleValGlnLeuMetGlnCysLeuAlaGlyPheValIleTyrSe : 213 |||||||||||||||||||||||!!!|||||||||||||||!.!|||||||||||||| erProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSe 285053 : GCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTC : 285109 214 : rValThrValGlySerCysSerLeuAlaAlaValPheValMetHisAlaCysGlyGln : 232 |||||||||||||:!!||||||||||||||||||||||||||||||!.!||||||||| rValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGlyGln 285110 : GGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAA : 285166 233 : PheGlnIleLeuValThrLysLeuArgArgLeuIleAspGlyLeuLysGluAspLysA : 252 |||::!|||||||||||||||||| !!:!|||:!!||||||:!!|||! ! |||! PheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLysGlyArgLysG 285167 : TTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGAGGAAGG : 285226 253 : spMetGluAsnIleValHisGluGlnArgLeuGlyAsnIleValGluHisHisLeuHi : 271 :!!... ..!||||||||||||||||||:!!|||:!!|||||||||||| ! lyLeuSer------ThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLy 285227 : GGTTGAGC------ACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAA : 285277 272 : sIleLeu{Gl} >>>> Target Intron 1 >>>> {y}PheIleSerGlnIle : 279 ||||||{||} 1411 bp {|}||||||||||||||| sIleLeu{Gl}++ ++{y}PheIleSerGlnIle 285278 : GATACTG{GG}gt.........................ag{T}TTTATATCGCAAATC : 286712 280 : GluGluLeuLeuAsnGluIleCysPheValGluPheIleGlyCysThrLeuAsnIleC : 299 |||! !||||||||||||||||||||||||||| ! |||||||||||||||||||||| GluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsnIleC 286713 : GAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATAT : 286772 300 : ysPheLeuGlyTyrPheLeuLeuLys >>>> Target Intron 2 >>>> Glu : 308 ||||||||||||||!:!||||||! ! 80 bp ||| ysPheLeuGlyTyrTyrLeuLeuThr++ ++Glu 286773 : GCTTTTTGGGATATTATTTACTGACGgt.........................agGAA : 286879 309 : TrpGluGlnSerGluThrIleGlyIleLeuThrTyrCysIleLeuLeuIleSerPheI : 328 ||||||||||||||||||||||||! :!!|||||||||! ||||||:!!||||||! TrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerPheT 286880 : TGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCA : 286939 329 : lePheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuSerGluGlu >>>> T : 345 ||||||:!!||||||||||||||||||||||||||||||||||||::: hrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286940 : CGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt...... : 286992 346 : arget Intron 3 >>>> CysLysSerIleGlyLeuSerAlaTyrMetIleAspT : 357 74 bp ||| !!.!:!!|||||||||.!!||||||||||||| ++CysLeuLysValGlyLeuSerThrTyrMetIleAspT 286993 : ...................agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACT : 287100 358 : rpHisArgLeuProGlyLysLysAlaLeuSerLeuIleLeuIleSerAlaAlaSerAs : 376 ||:!!|||||||||||||||! !|||! !.!!||||||||||||! !|||!.!||||| rpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAs 287101 : GGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAA : 287157 377 : nSerSerThrLysLeuThrAlaGlyLysLeuValGluLeuSerLeuSerSerPheCys : 395 |||||||! !||||||||||||||||||:!!:!!!!:||||||||||||||||||||| nSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCys 287158 : TTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGC : 287214 396 : Ser >>>> Target Intron 4 >>>> ValLeuLysSerSerLeuAlaTyrLe : 405 ||| 71 bp ||||||||||||:!!!!!|||||||| Ser++ ++ValLeuLysSerAlaPheAlaTyrLe 287215 : AGCgt.........................agGTGTTGAAATCGGCATTCGCATATCT : 287315 406 : uSerLeuLeuArgThrLeuThrThr : 413 ||||||||||||||||||||||||| uSerLeuLeuArgThrLeuThrThr 287316 : GAGCTTATTACGTACGCTAACCACA : 287341 vulgar: AmOr35 0 413 . KQ414889.1 284472 287341 + 1604 M 254 762 G 2 0 M 17 51 S 0 2 5 0 2 I 0 1407 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284473 287341 1604 + . gene_id 1 ; sequence AmOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284473 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284473 285287 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286698 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287220 287221 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 287220 287290 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287289 287290 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 287291 287341 . + . KQ414889.1 exonerate:protein2genome:local exon 287291 287341 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284473 287341 1604 + . alignment_id 1 ; Query AmOr35 ; Align 284473 1 762 ; Align 285235 257 51 ; Align 286700 275 99 ; Align 286879 308 111 ; Align 287064 345 156 ; Align 287291 397 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1519 Query range: 0 -> 413 Target range: 278525 -> 280554 1 : MetLeuValLeuLysAspSerSerSerValSerTyrSerLysAspTrpIleTyrSerV : 20 ||| !:!!:!!! ...|||!!!..! !!!!!::!:!! !||||||!!:||||||| MetAlaLeuValThrSerSerThrAspSerThrTrpAsnThrAspTrpMetTyrSerV 278526 : ATGGCACTGGTCACTTCGTCAACCGATTCGACGTGGAACACGGATTGGATGTACAGCG : 278583 21 : alGlnIleAsnArgTrpLeuLeuLysAlaIleGlyIleTrpProLeuSerLeuCysVa : 39 |||||!!:|||||||||!!!|||||| !!||||||:!!|||||||||||||||||||| alGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuCysVa 278584 : TACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGT : 278640 40 : lThrThrThrGluLysIleHisSerValIleLeuThrLeuIleSerIlePheLeuIle : 58 ||||||| !||||||||| !||||||:!!|||.!!||||||||| !||||||||| lThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIle 278641 : GACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATA : 278697 59 : GlyPheLeuLeuValProCysThrLeuCysThrLeuLeuAspLysThrGlyAspLeuA : 78 |||||||||||||||||||||.!!|||||||||:!!|||||||||||||||||||||| GlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuA 278698 : GGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCG : 278757 79 : spThrLysIleLysMetIleGlyProPheSerPheCysIleMetAlaAlaIleLysTy : 97 ||||||||||||||||||||||||||.!.|||||||||! ||||||.!!|||||||| spThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrIleLysTy 278758 : ACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATA : 278814 98 : rTyrValLeuLeuSerArgGlySerHisIleGlyLysCysIleGluAspIleArgVal : 116 ||||:!!|||:!!|||||||||.!! ! ||||||||||||:!:.!.|||||||||..! rTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIleArgThr 278815 : TTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACG : 278871 117 : AspTrpPheArgValSerSerHisAsnCysLeuGluAspArgLysIleMetMetGluA : 136 ||||||! !! !..! !|||:!!... |||:::|||:::||||||! !!!:! AspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMetArgAspS 278872 : GACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTGAGGGACA : 278931 137 : snAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGl : 155 :!|||||||||||||||||||||||||||||| !!||||||||||||||||||||||| erAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGl 278932 : GCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGG : 278988 156 : yPhePheTyrThrThrValMetProLeuCysThrLysArgThrGluIleIleAspAsn : 174 | !!|||||||||.!!||||||||||||! !.!! !||||||||||||||||||||| yValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIleAspAsn 278989 : AGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGACAAT : 279045 175 : GluIleValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrS : 194 |||! |||||||||||||||||||||||||||||||||||||||||||||||||||| GluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrS 279046 : GAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCA : 279105 195 : erProSerPheGluIleValGlnLeuMetGlnCysLeuAlaGlyPheValIleTyrSe : 213 |||||||||||||||||||||||!!!|||||||||||||||!.!||||||:!!||||| erProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSe 279106 : GCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTC : 279162 214 : rValThrValGlySerCysSerLeuAlaAlaValPheValMetHisAlaCysGlyGln : 232 |||||||||||||:!!||||||||| !||||||||||||||||||!.!||||||||| rValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCysGlyGln 279163 : GGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAA : 279219 233 : PheGlnIleLeuValThrLysLeuArgArgLeuIleAspGlyLeuLysGluAspLysA : 252 |||::!|||||||||||||||||| !!:!||||||||||||:!!|||! ! |||. PheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLysGlyArgLysS 279220 : TTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGGAGGAAGA : 279279 253 : spMetGluAsnIleValHisGluGlnArgLeuGlyAsnIleValGluHisHisLeuHi : 271 .!:!!... ..!||||||||||||||||||:!!|||:!!|||||||||||| ! erLeuSer------ThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLy 279280 : GCTTGAGC------ACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAA : 279330 272 : sIleLeu{Gl} >>>> Target Intron 1 >>>> {y}PheIleSerGlnIle : 279 ||||||{||} 571 bp {|}||||||||||||||| sIleLeu{Gl}++ ++{y}PheIleSerGlnIle 279331 : GATACTG{GG}gt.........................ag{T}TTTATATCGCAAATC : 279925 280 : GluGluLeuLeuAsnGluIleCysPheValGluPheIleGlyCysThrLeuAsnIleC : 299 |||! !||||||||||||||||||||||||||| ! |||||||||||||||||||||| GluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsnIleC 279926 : GAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATAT : 279985 300 : ysPheLeuGlyTyrPheLeuLeuLys >>>> Target Intron 2 >>>> Glu : 308 |||||||| !|||!:!||||||! ! 80 bp ||| ysPheLeuThrTyrTyrLeuLeuThr++ ++Glu 279986 : GCTTTTTGACATATTATTTACTCACGgt.........................agGAA : 280092 309 : TrpGluGlnSerGluThrIleGlyIleLeuThrTyrCysIleLeuLeuIleSerPheI : 328 |||||||||!:!!!:.!!||||||! !!!||||||! !!:!!!|||||||||!!.! TrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerLeuT 280093 : TGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTTTAA : 280152 329 : lePheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuSerGluGlu >>>> T : 345 ||||||:!!||||||||||||||||||||||||||||||||||||::: hrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 280153 : CGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt...... : 280205 346 : arget Intron 3 >>>> CysLysSerIleGlyLeuSerAlaTyrMetIleAspT : 357 74 bp ||| !!.!:!!|||:!!|||.!!||||||||||||| ++CysLeuLysValGlyValSerThrTyrMetIleAspT 280206 : ...................agTGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACT : 280313 358 : rpHisArgLeuProGlyLysLysAlaLeuSerLeuIleLeuIleSerAlaAlaSerAs : 376 ||:!!|||||||||||||||||||||! !.!!||||||||||||! !|||!.!||||| rpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaValSerAs 280314 : GGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAA : 280370 377 : nSerSerThrLysLeuThrAlaGlyLysLeuValGluLeuSerLeuSerSerPheCys : 395 |||||||! !||||||||||||||||||:!!:!!!!:||||||||||||||||||||| nSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCys 280371 : TTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGC : 280427 396 : Ser >>>> Target Intron 4 >>>> ValLeuLysSerSerLeuAlaTyrLe : 405 ||| 71 bp |||||||||!!!:!!!!!|||||||| Ser++ ++ValLeuLysThrAlaPheAlaTyrLe 280428 : AGCgt.........................agGTGTTAAAAACGGCATTCGCATATCT : 280528 406 : uSerLeuLeuArgThrLeuThrThr : 413 ||||||||||||||||||||||||| uSerLeuLeuArgThrLeuThrThr 280529 : GAGCTTATTACGTACGCTTACCACA : 280554 vulgar: AmOr35 0 413 . KQ414889.1 278525 280554 + 1519 M 254 762 G 2 0 M 17 51 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278526 280554 1519 + . gene_id 2 ; sequence AmOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278526 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278526 279340 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280554 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280554 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278526 280554 1519 + . alignment_id 2 ; Query AmOr35 ; Align 278526 1 762 ; Align 279288 257 51 ; Align 279913 275 99 ; Align 280092 308 111 ; Align 280277 345 156 ; Align 280504 397 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 769 Query range: 10 -> 413 Target range: 208191 -> 212084 11 : SerTyrSerLysAspTrpIleTyrSerValGlnIleAsnArgTrpLeuLeuLysAlaI : 30 !:!|||!.!!!.||| !! !!:!!:!|||!:::!:||| !||| !|||||| !| AsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuLysIleI 208192 : AACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGAAGATAA : 208249 31 : leGlyIleTrpProLeuSerLeuCysValThrThrThrGluLysIleHisSerValIl : 49 ||||| !|||||| !|||:!! ! !:!! ! !|||!!.! !!!. !:!!:! leGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHisIleLe 208250 : TCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCATATTCT : 208306 50 : eLeuThrLeuIleSerIlePheLeuIleGlyPheLeuLeuValProCysThrLeuCys : 68 !|||!.!:!!:!!||| !! !|||:!!||||||:!!:!!:!!||| ! !:!!! ! uLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGlyMetPhe 208307 : CTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATGTTC : 208363 69 : ThrLeuLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProPheS : 88 .!!:!!||| !..!! !|||!!! !! !:!!:!!|||!!: !.!! !!.!.| AlaIleLeu---ValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaLeuS 208364 : GCGATCCTC---GTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTCTGA : 208420 89 : erPheCysIleMetAlaAlaIleLysTyrTyrValLeuLeuSerArgGlySerHisIl : 107 |||||! !!!:|||||| !! |||||| :!!:!! ! !|||! !.!! !!|| erPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAspIl 208421 : GCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGACAT : 208477 108 : eGlyLysCysIleGluAspIleArgValAspTrpPheArgValSerSerHisAsnCys : 126 | !!||||||:!!||| !!:!!..!!.!|||||| !.!|||..! !.!. eArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGlu------ 208478 : ACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAG------ : 208531 127 : LeuGluAspArgLysIleMetMetGluAsnAlaArgIleGlyArgSerLeuAlaIleP : 146 ||||||||||||||||||:!!!!:||||||!!!.!!!.!|||!.!||| !:!:. ---GluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValI 208532 : ---GAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGA : 208585 147 : heCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCy : 165 !.|||!.!!.!|||||||||.!!||| ...|||||| !!.!:!!|||||| leCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuTh 208586 : TATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCAC : 208642 166 : s<->ThrLysArgThrGluIleIleAspAsnGluIleValArgSerGlnAlaPhePro : 183 ! !||| !..!||| !! !||| !! !|||!!!! !!.!!:!||| rArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrPro 208643 : TCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCT : 208699 184 : IleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnLeuM : 203 :!! !!:! !:!!|||||| !||| !|||||| ! !|||||| !! ! !: ValProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrV 208700 : GTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGG : 208759 204 : etGlnCysLeuAlaGlyPheValIleTyrSerValThrValGlySerCysSerLeuAl : 222 !:|||! |||:!!||||||||| !:!!!:!:!!|||||||||:!!|||.!!||||| alGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAl 208760 : TACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGC : 208816 223 : aAlaValPheValMetHisAlaCysGlyGlnPheGlnIleLeuValThrLysLeuArg : 241 ||||:!!.!!!.!||||||||||||||||||.!.|||||||||:!!:!! !:!!..! aAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGlu 208817 : CGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAG : 208873 242 : ArgLeuIleAspGlyLeuLysGluAspLysAspMetGluAsnIleValHisGluGlnA : 261 !:!|||:!!|||||| ::!||||||:!!!!: :!!|||:!: !!:|||| LysLeuValAspGly---ArgGluAspGluGlu---LysAsnLeu------AspGlnA 208874 : AAGTTGGTCGATGGA---CGGGAGGACGAGGAG---AAGAATTTG------GATCAGA : 208921 262 : rgLeuGlyAsnIleValGluHisHisLeuHisIleLeu{Gl} >>>> Target In : 274 |||||!.!||||||||||||!!.|||:!!!..:!::!!{..} 1536 rgLeuAlaAsnIleValGluGlnHisValArgValIle{As}++ 208922 : GGTTGGCTAATATCGTGGAGCAGCATGTTCGAGTGATC{AA}gt.............. : 208964 275 : tron 1 >>>> {y}PheIleSerGlnIleGluGluLeuLeuAsnGluIleCysPhe : 288 bp {!}||||||:!!! !! !|||.!.||||||:!!||||||! !!. ++{n}PheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeu 208965 : ...........ag{T}TTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTG : 210538 289 : ValGluPheIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrPheLeuLeuLys : 308 :!!|||.!.:!:|||||||||||||||!!:|||||||||||||||!:! !:!!! IleGluMetValGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle+ 210539 : ATAGAAATGGTGGGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTg : 210598 309 : >>>> Target Intron 2 >>>> GluTrpGluGlnSerGluThrIleGlyIle : 317 66 bp ||||||!!:...!.!!!: !!|||.!!! ! + ++GluTrpAspSerLysAspProIleSerSer 210599 : t.........................agGAATGGGACTCTAAAGACCCTATCAGCAGT : 210691 318 : LeuThrTyrCysIleLeuLeuIleSerPheIlePheAsnIlePheIleLeuCysTyrI : 337 ||||||||| :!!||||||! !||| !!! |||||||||||||||!!!||||||| LeuThrTyrIleValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrI 210692 : CTGACGTACATAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACA : 210751 338 : leGlyGluIleLeuSerGluGlu >>>> Target Intron 3 >>>> CysLys : 346 ||||||||:!:|||:!!|||:!: 999 bp ! leGlyGluValLeuAlaGluGln++ ++ThrVal 210752 : TCGGTGAAGTGTTGGCTGAACAggt.........................agACAGTA : 211777 347 : SerIleGlyLeuSerAlaTyrMetIleAspTrpHisArgLeuProGlyLysLysAlaL : 366 !.!:!!||| !!.!:!!|||||||||||||||:!!|||:!!||||||||||||!.!| LysValGlyGluLysSerTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyL 211778 : AAAGTTGGAGAAAAGTCTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTT : 211837 367 : euSerLeuIleLeuIleSerAlaAlaSerAsnSerSerThrLysLeuThrAlaGlyLy : 385 || !:!! !|||!!:! !:!! !|||:!!|||!!!||||||:!!|||||||||!! euValValProLeuMetIleSerMetSerHisSerThrThrLysIleThrAlaGlyAs 211838 : TGGTCGTACCCTTGATGATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAA : 211894 386 : sLeuValGluLeuSerLeuSerSerPheCysSer >>>> Target Intron 4 > : 397 .|||:!!! ||||||:!!||||||||| !!..! 104 bp nLeuIleValLeuSerIleSerSerPheGlyAsp++ 211895 : TCTCATCGTTCTTTCAATCAGTAGTTTCGGTGACgt...................... : 211932 398 : >>> ValLeuLysSerSerLeuAlaTyrLeuSerLeuLeuArgThrLeuThrThr : 413 |||:!!|||!!!|||:!!.!!||||||!:!:!!|||||||||!!!|||||| ++ValIleLysThrSerValThrTyrLeuAsnMetLeuArgThrPheThrThr 211933 : ...agGTTATCAAGACTTCGGTAACATACTTGAACATGCTACGAACATTCACAACC : 212084 vulgar: AmOr35 10 413 . KQ414889.1 208191 212084 + 769 M 61 183 G 1 0 M 52 156 G 3 0 M 38 114 G 0 3 M 81 243 G 1 0 M 5 15 G 1 0 M 3 9 G 2 0 M 15 45 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 995 3 0 2 M 52 156 5 0 2 I 0 100 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208192 212084 769 + . gene_id 3 ; sequence AmOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208192 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208192 208961 . + . insertions 3 ; deletions 8 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211929 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 211930 211931 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 211930 212033 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 212032 212033 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 212034 212084 . + . KQ414889.1 exonerate:protein2genome:local exon 212034 212084 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208192 212084 769 + . alignment_id 3 ; Query AmOr35 ; Align 208192 11 183 ; Align 208375 73 156 ; Align 208531 128 114 ; Align 208648 166 243 ; Align 208891 248 15 ; Align 208906 254 9 ; Align 208915 259 45 ; Align 210499 275 99 ; Align 210664 308 111 ; Align 211774 345 156 ; Align 212034 397 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 698 Query range: 7 -> 397 Target range: 217144 -> 219671 8 : SerSerValSerTyrSerLysAspTrpIleTyrSerValGlnIleAsnArgTrpLeuL : 27 !!!..! !...|||...|||::: |||:!!||| ||||||||||||| ThrAspTyrGluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuL 217145 : ACCGACTACGAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGT : 217202 28 : euLysAlaIleGlyIleTrpProLeuSerLeuCysValThrThrThrGluLysIleHi : 46 ||||| !!!!:|||:!!|||||| !|||! ! !..!|||! !:!!..!||||||! euLysProMetGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLe 217203 : TGAAACCGATGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCT : 217259 47 : sSerValIleLeuThrLeuIleSerIlePheLeuIleGlyPheLeuLeuValProCys : 65 !! ! !:!::!!!.! !:!!!!! ! !||||||.!!||||||!!!||||||||| uTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCys 217260 : CTACAAACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGC : 217316 66 : ThrLeuCysThrLeuLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleG : 85 :!!:!!! !..!!!!|||!!: ..!! !|||||| !! !|||:!:|||:!!.!!| SerMetTyrValPheLeuGlu---ValGluAspLeuTyrAspLysLeuLysLeuPheG 217317 : TCCATGTACGTGTTCCTCGAA---GTTGAAGATCTCTACGACAAGTTGAAACTGTTCG : 217373 86 : lyProPheSerPheCysIleMetAlaAlaIleLysTyrTyrValLeuLeuSerArgGl : 104 |||||!!.! !||||||:!:|||||| !:!!||||||||| !|||:!! !!.! lyProLeuIlePheCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLy 217374 : GTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAA : 217430 105 : ySerHisIleGlyLysCysIleGluAspIleArgValAspTrpPheArgValSerSer : 123 !:!! !!||| !!:!!|||:!:..! |||..! !|||||| !.!||| sAlaAspIleArgGluCysValArgArgIleGluArgAspTrpArgAsnVal------ 217431 : GGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTC------ : 217484 124 : HisAsnCysLeuGluAspArgLysIleMetMetGluAsnAlaArgIleGlyArgSerL : 143 !..||| !:!!||||||:!! |||!!:! !||||||!.!.!!||||||!.!| ---ArgCysGluLysAspArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysL 217485 : ---AGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAAT : 217538 144 : euAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMe : 162 ||!.!:!!.!!|||.!! !||||||||||||||| |||||| !!.!!! euValLeuLeuCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIl 217539 : TGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcgttttttattacatCGCTAT : 217595 163 : tProLeuCysThrLysArgThrGluIleIleAspAsnGluIleVal<->ArgSerGln : 180 :|||:!! !!..! !|||! ! ! :!!....!.:!!..! ! ! !! ! eProIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeu 217596 : ACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTG : 217652 181 : AlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleV : 200 !.!||||||.!! !:! !:!!:!!||| !!||| !!!!|||!!! !||||||| ValPheProPheThrLysTyrIleIleAspThrArgTyrThrProThrAsnGluIleV 217653 : GTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCTACGAACGAAATTG : 217712 201 : alGlnLeuMetGlnCysLeuAlaGlyPheValIleTyrSerValThrValGlySerCy : 219 || !!!:!:|||! :!!|||||| !:!!!!::!!.!!:!!||| !!.!:!!|| alPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCy 217713 : TGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTG : 217769 220 : sSerLeuAlaAlaValPheValMetHisAlaCysGlyGlnPheGlnIleLeuValThr : 238 |||||||||||||!.!|||!.!:!:|||||||||||||||.!!:!!:!:|||:!!!.! sSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGluValLeuMetAsn 217770 : CAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAAC : 217826 239 : LysLeuArgArgLeuIleAspGlyLeuLysGluAspLysAspMetGluAsnIleValH : 258 !|||!:!!.!|||||||||||| !||||||...:!!! !||| TrpLeuGlnHisLeuIleAspGly---------ArgAlaAspMetSerAspThrVal- 217827 : TGGCTGCAACATTTAATCGACGGT---------AGAGCGGATATGAGCGATACTGTG- : 217877 259 : isGluGlnArgLeuGlyAsnIleValGluHisHisLeuHisIleLeu{Gl} >>>> : 274 !!: |||:!!!.!!:!||||||...!!.|||:!!!..||||||{ } --AspGlyArgIleAlaSerIleValSerGlnHisValArgIleLeu{Ly}++ 217878 : --GATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTA{AA}gt..... : 217926 275 : Target Intron 1 >>>> {y}PheIleSerGlnIleGluGluLeuLeuAsnGlu : 285 1229 bp {!}|||::::!!! ! !|||..! !|||.!.:!! ++{s}PheLeuThrLeuThrGluArgThrLeuGlnGln 217927 : ....................ag{a}tttttgaCGCTCACAGAGAGAACCCTCCAGCAA : 219184 286 : IleCysPheValGluPheIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrPheL : 305 |||! !|||!.!||||||:!!|||||||||:!!:!!||||||.!!:!!||||||!:!: IleSerPheAlaGluPheLeuGlyCysThrMetAspIleCysLeuValGlyTyrTyrI 219185 : ATCTCTTTCGCTGAATTTCTAGGATGCACCATGGACATATGTCTCGTTGGATATTACA : 219244 306 : euLeuLys >>>> Target Intron 2 >>>> GluTrpGluGlnSerGluThr : 314 !!:!! ! 76 bp ||||||:!!..!!:!!!:..! leIleVal++ ++GluTrpLysSerAsnAspVal 219245 : TTATCGTGgt.........................agGAATGGAAATCGAATGATGTA : 219347 315 : IleGlyIleLeuThrTyrCysIleLeuLeuIleSerPheIlePheAsnIlePheIleL : 334 ! .!! !:!!|||||| !|||||||||||||||.!. |||||||||||||||. ThrSerAlaValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIleP 219348 : ACGAGTGCAGTGACATACATCATTCTACTTATATCCCTcactttcaacattttcatat : 219407 335 : euCysTyrIleGlyGluIleLeuSerGluGlu >>>> Target Intron 3 >>> : 345 ..||||||||||||||||||:!!:!!|||:!: 73 bp heCysTyrIleGlyGluIleValAlaGluGln++ 219408 : tttgctaCATAGGAGAGATCGTTGCTGAACAggt........................ : 219442 346 : > CysLysSerIleGlyLeuSerAlaTyrMetIleAspTrpHisArgLeuProGlyL : 363 |||:::...|||||| :!!|||||||||!!:|||:!!|||||| !!|||| ++CysArgLysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyL 219443 : .agTGtaggaaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAA : 219567 364 : ysLysAlaLeuSerLeuIleLeuIleSerAlaAlaSerAsnSerSerThrLysLeuTh : 382 ||||| !|||!!! !:!!|||! !! !||| !||||||||||||! !|||||||| ysLysLysLeuTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuTh 219568 : AGAAAAAGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGAC : 219624 383 : rAlaGlyLysLeuValGluLeuSerLeuSerSerPheCysSerVal : 397 |||||||!!.:!!||||||||||||:!!|||!!!||| !..!||| rAlaGlyAsnMetValGluLeuSerIleSerThrPheThrAspVal 219625 : AGCCGGAAATATGGTCGAATTGTCTATCAGCACTTTTACCGACGTG : 219671 vulgar: AmOr35 7 397 . KQ414889.1 217144 219671 + 698 M 65 195 G 1 0 M 48 144 G 3 0 M 53 159 G 0 3 M 69 207 G 3 0 M 8 24 G 1 0 M 15 45 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 37 111 5 0 2 I 0 69 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217145 219671 698 + . gene_id 4 ; sequence AmOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217145 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217145 217923 . + . insertions 3 ; deletions 8 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217145 219671 698 + . alignment_id 4 ; Query AmOr35 ; Align 217145 8 195 ; Align 217340 74 144 ; Align 217484 125 159 ; Align 217646 178 207 ; Align 217853 250 24 ; Align 217877 259 45 ; Align 219154 275 99 ; Align 219329 308 111 ; Align 219513 345 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 659 Query range: 18 -> 412 Target range: 226933 -> 230518 19 : SerValGlnIleAsnArgTrpLeuLeuLysAlaIleGlyIleTrpProLeuSerLeuC : 38 |||:!!|||:!:|||||||||||||||||| !!:!!||||||||||||! !|||! ! SerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgL 226934 : AGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCA : 226991 39 : ysValThrThrThrGluLysIleHisSerValIleLeuThrLeuIleSerIlePheLe : 57 !:!! !! !! !!:! ! !||| !:!::!! !!!!:!!!!! ! || ysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLe 226992 : AAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCT : 227048 58 : uIleGlyPheLeuLeuValProCysThrLeuCysThrLeuLeuAspLysThrGlyAsp : 76 |!!:.!!||| !|||||| !! !! !|||! !..!:!!|||!!: !! !|||! ! uMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAla 227049 : GATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCT : 227105 77 : LeuAspThrLysIleLysMetIleGlyProPheSerPheCysIleMetAlaAlaIleL : 96 ! !:!!||| :!:|||||||||||||||.!.||||||! ! |||:!! !:!!| TyrAsnThr---LeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuL 227106 : TACAACACG---CTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCA : 227162 97 : ysTyrTyrValLeuLeuSerArgGlySerHisIleGlyLysCysIleGluAspIleAr : 115 |||||! !:!!||| !! !!.!! !..! !!||| !:!!|||:!!||| |||!: ysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIleLy 227163 : AGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAA : 227219 116 : gValAspTrpPheArgValSerSerHisAsnCysLeuGluAspArgLysIleMetMet : 134 ! !|||||| !.!:!! !..! !||||||||||||!!.:!:|||:!! sTrpAspTrpLysAsnIle---------ArgTyrLeuGluAspArgAsnValMetVal 227220 : ATGGGACTGGAAGAATATC---------AGATACCTGGAGGACAGAAACGTGATGGTG : 227267 135 : GluAsnAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerG : 154 ! !!||| ! !||||||!.!||| !! !.!!|||.!! !|||:!:!:!|||. ThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerS 227268 : ACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgta : 227327 155 : lyGlyPhePheTyrThrThrValMetProLeuCysThrLysArgThrGluIleIleAs : 173 .. |||::: ! !|||:!:|||:!! !.!! !!!!..!! !! || erPheValPhePheTyrIleValValProIleAsnAlaGlySerValAlaThrGluAs 227328 : gtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGA : 227384 174 : p<->AsnGluIleValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro : 191 | |||.!.! ! !! !..!..! !!||||||.!! !:! !:!! !||| ! pGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIleIleAlaAspVal 227385 : CGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTT : 227441 192 : ArgThrSerProSerPheGluIleValGlnLeuMetGlnCysLeuAlaGlyPheValI : 211 ||| !||||||! ! !|||||| !! ! !:!:|||! !:!!.!!|||.!!|||: ArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValThrGlyIleValL 227442 : CGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGT : 227501 212 : leTyrSerValThrValGlySerCysSerLeuAlaAlaValPheValMetHisAlaCy : 230 !::!!.!!|||||| !!.!:!!||||||:!!||||||:!!.!!!.!:!:|||||||| euHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCy 227502 : TGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTG : 227558 231 : sGlyGlnPheGlnIleLeuValThrLysLeuArgArgLeuIleAspGlyLeuLysGlu : 249 |||||||.!.:!!:!:||||||:!! !||| !!!.!|||||||||||| sGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGly--------- 227559 : CGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGC--------- : 227609 250 : AspLysAspMetGluAsnIleValHisGluGlnArgLeuGlyAsnIleValGluHisH : 269 !||||||...!!.! !:!! !!:.!.|||:!!!.!!:!|||||| |||| ArgAlaAspMetSerLysThrLeu---AspAspArgIleAlaSerIleValThrHisH 227610 : AGAGCGGATATGAGCAAAACACTG---GATGATAGAATCGCTAGCATCGTCACTCACC : 227663 270 : isLeuHisIleLeu{Gl} >>>> Target Intron 1 >>>> {y}PheIleSe : 277 ||:!!!..||||||{..} 396 bp {!}|||:!::! isValArgIleLeu{As}++ ++{n}PheLeuAl 227664 : ACGTTCGAATATTG{AA}gt.........................ag{C}TTTCTGGC : 228083 278 : rGlnIleGluGluLeuLeuAsnGluIleCysPheValGluPheIleGlyCysThrLeu : 296 !! ||||||:!! !:!!.!.:!!|||..!||||||||||||:!!|||||||||:!! aLeuIleGluLysThrMetGlnGlnIleAlaPheValGluPheLeuGlyCysThrIle 228084 : CCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGTACAATA : 228140 297 : AsnIleCysPheLeuGlyTyrPheLeuLeuLys >>>> Target Intron 2 >> : 308 ! !:!:|||.!!:!!! !|||!:!:!!:!!! ! 72 bp IleLeuCysLeuIleGluTyrTyrIleIleThr++ 228141 : ATTCTGTGCCTCATCGAGTATTACATCATAACGgt....................... : 228178 309 : >> GluTrpGluGlnSerGluThrIleGlyIleLeuThrTyrCysIleLeuLeuIle : 325 ||||||.!.! !!.!||| !! ! ! !:!!||||||! ||||||:!! ++GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeu 228179 : ..agGAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTA : 228299 326 : SerPheIlePheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuSerGluGlu : 345 ||||||! |||||||||||||||...||||||||||||||||||:!!:!!|||.!. SerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluHis+ 228300 : TCCTTTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACg : 228359 346 : >>>> Target Intron 3 >>>> CysLysSerIleGlyLeuSerAlaTyrMet : 354 1889 bp |||!:!!.!:!!||| !!.!:!!|||||| + ++CysArgLysValGlyGluLysSerTyrMet 228360 : t.........................agTGCAGAAAAGTCGGCGAAAAGTCGTACATG : 230275 355 : IleAspTrpHisArgLeuProGlyLysLysAlaLeuSerLeuIleLeuIleSerAlaA : 374 |||!!:|||:!!|||||| !!|||!!.||| !|||!!!! !|||||||||! !||| IleGluTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaM 230276 : ATCGAATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCA : 230335 375 : laSerAsnSerSerThrLysLeuThrAlaGlyLysLeuValGluLeuSerLeuSerSe : 393 !||||||!!!|||||||||!!!|||||||||!!.:!!||||||||||||:!!!:!!! etSerAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnTh 230336 : TGTCCAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACAC : 230392 394 : rPheCysSer >>>> Target Intron 4 >>>> ValLeuLysSerSerLeuA : 403 !||| !!..! 67 bp |||:!!|||!!!|||:!!! rPheSerAsp++ ++ValValLysThrSerMetG 230393 : TTTCAGCGACgt.........................agGTCGTTAAAACGTCCATGG : 230489 404 : laTyrLeuSerLeuLeuArgThrLeuThr : 412 .!!:!|||!:!:!!||||||||||||||| lyPheLeuAsnMetLeuArgThrLeuThr 230490 : GTTTCTTAAACATGCTACGAACACTGACG : 230518 vulgar: AmOr35 18 412 . KQ414889.1 226933 230518 + 659 M 61 183 G 1 0 M 41 123 G 3 0 M 49 147 G 0 3 M 73 219 G 3 0 M 8 24 G 1 0 M 15 45 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226934 230518 659 + . gene_id 5 ; sequence AmOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226934 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226934 227679 . + . insertions 3 ; deletions 8 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230403 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230403 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 230404 230405 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 230404 230470 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 230469 230470 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230471 230518 . + . KQ414889.1 exonerate:protein2genome:local exon 230471 230518 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226934 230518 659 + . alignment_id 5 ; Query AmOr35 ; Align 226934 19 183 ; Align 227117 81 123 ; Align 227240 125 147 ; Align 227390 174 219 ; Align 227609 250 24 ; Align 227633 259 45 ; Align 228077 275 99 ; Align 228248 308 111 ; Align 230248 345 156 ; Align 230471 397 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 630 Query range: 126 -> 410 Target range: 304443 -> 305928 127 : LeuGluAspArgLysIleMetMetGluAsnAlaArgIleGlyArgSerLeuAlaIleP : 146 |||..!||||||:!!!!:|||:!::!! !!!.!!:!!!:||||||!:!|||.!!|||. LeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleI 304444 : CTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAA : 304501 147 : heCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCy : 165 !!|||||| !|||||||||!!!|||||| !.!!||| !|||||||||! !!!!.. leCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheAl 304502 : TCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGC : 304558 166 : sThrLysArgThrGluIleIleAspAsnGluIleValArgSerGlnAlaPheProIle : 184 .||| !! ! !! ! ! !!|||...! :!!!:! !!! !.!!:!|||! ! aThrGlyThrTyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProThr 304559 : GACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACC : 304615 185 : TyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnLeuMetG : 204 |||!!!!.!|||!!!||| !!:!|||||||||! !!:!|||:!:||| ! !!!:!:! TyrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheValH 304616 : TACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTC : 304675 205 : lnCysLeuAlaGlyPheValIleTyrSerValThrValGlySerCysSerLeuAlaAl : 223 !.|||:!!..!|||!:!||||||||||||:!!|||!.!|||:!!|||.!!|||||||| isCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAl 304676 : ATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGC : 304732 224 : aValPheValMetHisAlaCysGlyGlnPheGlnIleLeuValThrLysLeuArgArg : 242 |:!!|||!.!! |||||||||||||||.!!.!.|||:!!:!!:!!::!||| !! ! aLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAsp 304733 : TCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGAT : 304789 243 : LeuIleAspGlyLeuLysGluAspLysAspMetGluAsnIleValHisGluGlnArgL : 262 |||:!!:!!.!! ||||||......|||:!: !!::!!|||| LeuValAsnSer---LysGluSerSerAspLeu---------------AspLysArgL 304790 : CTTGTCAACAGC---AAAGAATCATCTGATTTA---------------GATAAACGAT : 304831 263 : euGlyAsnIleValGluHisHisLeuHisIleLeu{Gl} >>>> Target Intro : 274 || !.!.||||||||||||||||||!..||||||{ !} 70 bp euIleGluIleValGluHisHisLeuArgIleLeu{Ar}++ 304832 : TAATAGAAATTGTTGAGCATCATTTGCGAATTTTA{AG}gt................. : 304871 275 : n 1 >>>> {y}PheIleSerGlnIleGluGluLeuLeuAsnGluIleCysPheVal : 289 {!}||| :!! !:!::!! !:!!|||.!.|||:!!||||||:!! ++{g}PheSerAlaIleValGlnThrValLeuGlnGluValCysPheLeu 304872 : ........ag{A}TTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTTCTTG : 304982 290 : GluPheIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrPheLeuLeuLys >> : 308 ||||||||||||! !|||||| ||||||.!.|||! !|||!:!! !:!!! ! GluPheIleGlySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysIleThr++ 304983 : GAATTCATTGGTTCTACCTTACTGATATGTCTACTTGAATACTACTGTATAACGgt.. : 305041 309 : >> Target Intron 2 >>>> GluTrpGluGlnSerGluThrIleGlyIleLeu : 318 62 bp !!:||||||...|||.!.|||:!!.!!:!! ! ++AspTrpGluSerSerAsnThrValSerLeuThr 305042 : .......................agGATTGGGAGAGCAGTAATACCGTTAGTCTTACA : 305131 319 : ThrTyrCysIleLeuLeuIleSerPheIlePheAsnIlePheIleLeuCysTyrIleG : 338 |||||| :!:|||||||||||| ! ! !|||||||||||||||||||||||||||| ThrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleG 305132 : ACATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTG : 305191 339 : lyGluIleLeuSerGluGlu >>>> Target Intron 3 >>>> CysLysSer : 347 |||||||||||! !|||:!! 413 bp !!!..||| lyGluIleLeuMetGluLys++ ++SerSerSer 305192 : GTGAGATTCTTATGGAAAAGgt.........................agAGCAGTAGC : 305631 348 : IleGlyLeuSerAlaTyrMetIleAspTrpHisArgLeuProGlyLysLysAlaLeuS : 367 :!!|||||||||..!!:!||||||..!|||:!!!.!|||||| !|||! ! !! !. ValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisG 305632 : GTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATG : 305691 368 : erLeuIleLeuIleSerAlaAlaSerAsnSerSerThrLysLeuThrAlaGlyLysLe : 386 !!||||||||||||! !||| !|||!:!!:! !!.!!|||:!!!:!|||||||||:! lyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysVa 305692 : GTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGT : 305748 387 : uValGluLeuSerLeuSerSerPheCysSer >>>> Target Intron 4 >>>> : 397 !|||!!:||||||||||||!!!||| ! !:! 106 bp lValAspLeuSerLeuSerThrPheGlyAsn++ 305749 : AGTTGATTTATCTTTATCCACATTTGGAAACgt......................... : 305783 398 : ValLeuLysSerSerLeuAlaTyrLeuSerLeuLeuArgThr : 410 |||||||||!!!||||||||||||||||||!!!||||||||| ++ValLeuLysThrSerLeuAlaTyrLeuSerPheLeuArgThr 305784 : agGTTCTGAAAACGTCATTAGCGTATTTAAGTTTCCTTCGGACT : 305928 vulgar: AmOr35 126 410 . KQ414889.1 304443 305928 + 630 M 120 360 G 1 0 M 6 18 G 5 0 M 15 45 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 37 111 5 0 2 I 0 409 3 0 2 M 52 156 5 0 2 I 0 102 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304444 305928 630 + . gene_id 6 ; sequence AmOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 304444 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304444 304868 . + . insertions 0 ; deletions 6 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 1 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305780 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305780 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305781 305782 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305781 305886 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 305885 305886 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305887 305928 . + . KQ414889.1 exonerate:protein2genome:local exon 305887 305928 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304444 305928 630 + . alignment_id 6 ; Query AmOr35 ; Align 304444 127 360 ; Align 304804 248 18 ; Align 304822 259 45 ; Align 304940 275 99 ; Align 305101 308 111 ; Align 305625 345 156 ; Align 305887 397 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 576 Query range: 8 -> 412 Target range: 259745 -> 262201 9 : SerValSerTyrSerLysAspTrpIleTyrSerValGlnIleAsnArgTrpLeuLeuL : 28 ..!..!|||!:!!!!!.. !! ! !||||||:!!|||.!!|||||||||!!!|||| GluThrSerPheThrSerHisSerAspTyrSerLeuGlnPheAsnArgTrpPheLeuL 259746 : GAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCCAATTTAATCGATGGTTCCTGA : 259803 29 : ysAlaIleGlyIleTrpProLeuSerLeuCysValThrThrThrGluLysIleHisSe : 47 || !!|||||| !||||||! !|||! !! !..!|||! ! !||||||||| !|| ysProIleGlyAlaTrpProProSerSerSerThrThrArgLeuGluLysIleIleSe 259804 : AACCGATAGGCGCTTGGCCACCTTCATCCTCCACGACCAGACTCGAGAAGATCATCTC : 259860 48 : rValIleLeuThrLeuIleSerIlePheLeuIleGlyPheLeuLeuValProCysThr : 66 ||||||||||! !!!!|||!!! ! ! !||| ! !! !|||:!!||||||..! rValIleLeuIlePheIleCysTyrSerThrIleLeuValThrLeuIleProCysVal 259861 : TGTTATCCTGATCTTTATCTGCTACAGTACCATACTGGTCACCCTGATCCCGTGCGTA : 259917 67 : LeuCysThrLeuLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyP : 86 ||| !! !||||||!!:||| ! ..!||| !!! !|||! |||:!!:!!|||| LeuHisMetLeuLeuGluLysGlu---SerLeuTyrMetLysThrLysValLeuGlyP 259918 : CTTCACATGCTACTCGAGAAGGAG---AGTTTGTACATGAAAACGAAGGTGCTCGGTC : 259974 87 : roPheSerPheCysIleMetAlaAlaIleLysTyrTyrValLeuLeuSerArgGlySe : 105 ||.!!!!! !!! .!!:!:!.!..!|||!!.||| ..!||||||! !||||||!! roLeuThrHisTrpPheValGlyCysIleAsnTyrThrThrLeuLeuLeuArgGlyAr 259975 : CTCTTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTGTTGAGAGGCAG : 260031 106 : rHisIleGlyLysCysIleGluAspIleArgValAspTrpPheArgValSerSerHis : 124 ! !!||| !!..|||:!:||| !!:!:..! !|||||| |||:!!! !!!!... gAspIleLeuSerCysValGluHisValGluAsnAspTrp---ArgIleIleThrArg 260032 : AGACATACTTAGCTGCGTGGAACACGTGGAGAACGATTGG---AGAATTATAACGAGG : 260085 125 : AsnCysLeuGluAspArgLysIleMetMetGluAsnAlaArgIleGlyArgSerLeuA : 144 .!. :!!|||!:!!!.:!:|||:!!..! !!|||!:!.!!||||||! !:!!| Glu------LysAspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgTyrValA 260086 : GAG------AAGGATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGATACGTCG : 260139 145 : laIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetPr : 163 || !! !||||||!.!|||:!! ! .!!|||! !.!.! !!:! ! !|||! ! laAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCysLeuValThrVa 260140 : CTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTCACGGT : 260196 164 : oLeuCysThrLysArgThrGluIle<->IleAspAsnGluIleValArgSerGlnAla : 181 !||| !!|||:!! !! !:!!:!: ! !!!:!....!||||||!.! ! ! !! lLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleValHisLeuLeuPro 260197 : GTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTGCCG : 260253 182 : PheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValG : 201 ! ! !!:!:|||!:!! !|||:!!:!! !!.! !||||||! ! !|||||||||! CysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetAsnGluIleValL 260254 : TGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGATTGTTC : 260313 202 : lnLeuMetGlnCysLeuAlaGlyPheValIleTyrSerValThrValGlySerCysSe : 220 :!!:!!|||! !:!!:!!||||||:!!:!: !!||| !|||||||||! !! !|| euValValGlnPheValSerGlyPheIleValAsnSerSerThrValGlyIlePheSe 260314 : TCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTTCAG : 260370 221 : rLeuAlaAlaValPheValMetHisAlaCysGlyGlnPheGlnIleLeuValThrLys : 239 |||||||||||||.!...! |||||||||||||||!!..!.:!:|||:!! ! ! rLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMetGluTrp 260371 : TCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAATGG : 260427 240 : LeuArgArgLeuIleAspGlyLeuLysGluAspLysAspMetGluAsnIleValHisG : 259 :!!! !..!!!!:!:||| |||...!:!:!!! !:!!!!.! !.!! ! IleThrGluPheValAsp---------GluSerArgAsnArgLysLysLysAlaProP 260428 : ATCACGGAGTTTGTGGAC---------GAGTCGAGGAACAGGAAGAAAAAGGCTCCTT : 260478 260 : luGlnArgLeuGlyAsnIleValGluHisHisLeu{Hi} >>>> Target Intro : 271 :!!..!:!!||| ||||||||||||||||||{..} 257 bp heLysGluIleGlyValIleValGluHisHisLeu{Ar}-- 260479 : TCAAGGAGATCGGAGTGATTGTCGAACATCATTTG{AG}ag................. : 260518 272 : n 1 >>>> {s}IleLeuGlyPheIleSerGlnIleGluGluLeuLeuAsnGluIle : 286 {.}:!:! !.!!|||||||||!::||||||!!::!!:!!|||..!||| -+{g}LeuCysSerPheIleSerArgIleGluAspValMetAsnArgIle 260519 : ........tg{A}TTGTGCAGCTTCATATCGCGTATCGAGGATGTGATGAACCGGATA : 260816 287 : CysPheValGluPheIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrPheLeuL : 306 ||||||:!!|||!!..!! !!|||||||||:!!||||||.!.|||||||||!:!:!!| CysPheLeuGluLeuPheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrIleL 260817 : TGCTTCCTGGAGTTGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATATTC : 260876 307 : euLys >>>> Target Intron 2 >>>> GluTrpGluGlnSerGluThrIle : 315 ||! ! 852 bp ||||||! :!!..!!!:! ! ! euMet++ ++GluTrpAlaGluGlnAspIleGln 260877 : TTATGgt.........................agGAATGGGCTGAGCAAGATATACAA : 261755 316 : GlyIleLeuThrTyrCysIleLeuLeuIleSerPheIlePheAsnIlePheIleLeuC : 335 ..!:!:! !||||||! !!!::!!||||||:!!.!! !||||||:!!||||||:!!| AsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheIleIleC 261756 : AATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCT : 261815 336 : ysTyrIleGlyGluIleLeuSerGluGlu >>>> Target Intron 3 >>>> : 345 ||||||||||||||||||||!!!|||:!! 81 bp ysTyrIleGlyGluIleLeuThrGluGln++ ++ 261816 : GTTACATCGGTGAAATACTAACGGAACAGgt.........................ag : 261924 346 : CysLysSerIleGlyLeuSerAlaTyrMetIleAspTrpHisArgLeuProGlyLysL : 364 |||..!!.!:!!||| ! !!.!||||||! !:!!|||:!! !||||||! !|||! CysSerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuProAspLysS 261925 : TGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACCTGATAAAA : 261983 365 : ysAlaLeuSerLeuIleLeuIleSerAlaAlaSerAsnSerSerThrLysLeuThrAl : 383 .. !|||..!||||||||||||! !||| !!.! !!.!!!.! !!!!!! !.. erIleLeuAspLeuIleLeuIleIleAlaArgLysProProGlyAsn***PheLysCy 261984 : GTATCCTTGATTTGATTTTGATCATTGCACGAAAACCGCCGGGAAATTAGTTCAAATG : 262040 384 : aGlyLysLeuValGluLeuSer{Le} >>>> Target Intron 4 >>>> {u} : 391 ! ::!!!!..!...! !:!!{:!} 75 bp {!} s---ArgPheThrArgSerAla{Il}++ ++{e} 262041 : T---CGGTTTACACGTTCGGCG{AT}gt.........................ag{T} : 262138 392 : SerSerPheCysSerValLeuLysSerSerLeuAlaTyrLeuSerLeuLeuArgThrL : 411 !!! !.!.! !..!|||:!!|||!!!:!!!!!|||||||||!:!||||||||| !: ProLeuIlePheGlnValValLysThrAlaPheAlaTyrLeuAsnLeuLeuArgGlnM 262139 : CCGTTGATATTCCAGGTGGTTAAAACTGCTTTCGCGTATCTGAATCTGTTGCGTCAAA : 262196 412 : euThr : 412 !!||| etThr 262197 : TGACG : 262201 vulgar: AmOr35 8 412 . KQ414889.1 259745 262201 + 576 M 66 198 G 1 0 M 43 129 G 1 0 M 6 18 G 2 0 M 44 132 G 0 3 M 74 222 G 3 0 M 22 66 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 36 108 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 39 117 G 1 0 M 6 18 S 0 2 5 0 2 I 0 71 3 0 2 S 1 1 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259746 262201 576 + . gene_id 7 ; sequence AmOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259746 260515 . + . KQ414889.1 exonerate:protein2genome:local exon 259746 260515 . + . insertions 3 ; deletions 7 KQ414889.1 exonerate:protein2genome:local splice5 260516 260517 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local intron 260516 260772 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260771 260772 . + . intron_id 0 ; splice_site "TG" KQ414889.1 exonerate:protein2genome:local cds 260773 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260773 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262062 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262062 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 262063 262064 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 262063 262137 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 262136 262137 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 262138 262201 . + . KQ414889.1 exonerate:protein2genome:local exon 262138 262201 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259746 262201 576 + . alignment_id 7 ; Query AmOr35 ; Align 259746 9 198 ; Align 259944 76 129 ; Align 260073 120 18 ; Align 260091 128 132 ; Align 260226 172 222 ; Align 260448 249 66 ; Align 260774 272 108 ; Align 261734 308 111 ; Align 261926 345 117 ; Align 262043 385 18 ; Align 262139 392 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 567 Query range: 7 -> 397 Target range: 232429 -> 235147 8 : SerSerValSerTyrSerLysAspTrpIleTyrSerValGlnIleAsnArgTrpLeuL : 27 ..!!!!:!!!:! !!!!::!|||!:: ||||||:!!|||:!:|||||||||!!!| AspThrLeuAsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheL 232430 : GACACGTTGAACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTC : 232487 28 : euLysAlaIleGlyIleTrpProLeuSerLeuCysValThrThrThrGluLysIleHi : 46 ||! ! !!!!:||| !||||||! ! ! ! ..!:!!! !.!!:!!:!!:!!! euThrProMetGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLeuLe 232488 : TGACACCGATGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACT : 232544 47 : sSerValIleLeuThrLeuIleSerIlePheLeuIleGlyPheLeuLeuValProCys : 65 !:!! !:!:|||! !|||! !!!! !! !|||!!: !! !! !:!!||||||||| uAlaLysLeuLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValProCys 232545 : CGCGAAACTGTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGC : 232601 66 : ThrLeuCysThrLeuLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleG : 85 ! !|||! !! !|||!!!!!: ! ||| ..!|||!!: !!:!!!:||| |||| IleLeuPheIleLeuPheGluAspThr---SerLeuGluGluArgMetLysSerIleG 232602 : ATTCTGTTCATCCTGTTCGAAGACACG---AGCCTAGAGGAAAGGATGAAGTCTATCG : 232658 86 : lyProPheSerPheCysIleMetAlaAlaIleLysTyrTyrValLeuLeuSerArgGl : 104 |||||.!.||| !! !:!:|||!.!! !:!:!!.|||! ! !||||||:!!!:!!. lyProMetSerHisPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAl 232659 : GTCCTATGAGTCACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGC : 232715 105 : ySerHisIleGlyLysCysIleGluAspIleArgValAspTrpPheArgValSerSer : 123 !!:! !!||| ! ! |||:!:|||.!.:!:!:! !|||||| !.!|||!.!!.! aAsnAspIleLeuTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLys 232716 : GAACGACATCCTCTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAA : 232772 124 : HisAsnCysLeuGluAspArgLysIleMetMetGluAsnAlaArgIleGlyArgSerL : 143 ! ! ! !!||| ! :!:|||:!!:!!||||||!:!:!!|||||||||: Pro---------ValHisArgAspLeuMetLeuLysAsnAlaLysLeuGlyArgSerI 232773 : CCC---------GTCCATCGTGATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGA : 232823 144 : euAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMe : 162 !!||| !.!!..!||| !! !|||:!!!!!|||! ! !! ! !! !! !|||! leAlaCysIleAlaAlaPheCysMetHisThrGlyValGlySerAspGluIleValTh 232824 : TAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCGGCTCCGACGAAATAGTCAC : 232880 163 : tProLeuCysThrLysArgThrGluIleIleAspAsnGluIleValArgSerGlnAla : 181 !||| !! !!!!||| !:!:! ||||||! ! ! !! ! ! !! rGlyLeu---ArgMetSerThrPheTyrValGlyAsnGluSerTyrSerMetTyrPro 232881 : AGGACTT---CGTATGAGCACGTTCTACGTGGGGAACGAGAGTTACTCGATGTACCCG : 232934 182 : PhePro<-><->IleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluI : 199 !!.||| .!!|||! ! !|||:!!||| !!||| !||||||!!! !|||| LeuProCysThrPheTyrThrLysLeuMetAspThrArgPheSerProThrAsnGluI 232935 : TTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTCAGTCCGACGAACGAGA : 232994 200 : leValGlnLeuMetGlnCysLeuAlaGlyPheValIleTyrSerValThrValGlySe : 218 ||:!! :!!:!:|||||||||:!!||||||:!!:!: !!|||||||||||||||:! leMetPheValLeuGlnCysLeuSerGlyPheIleValAsnSerValThrValGlyAl 232995 : TAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGC : 233051 219 : rCysSerLeuAlaAlaValPheValMetHisAlaCysGlyGlnPheGlnIleLeuVal : 237 !|||.!!|||!.!||||||.!.!.!||||||||||||||||||.!..!.:!::!!:!! aCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGlnLeuAsnValValMet 233052 : CTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACAGCTGAACGTGGTGATG : 233108 238 : ThrLysLeuArgArgLeuIleAspGlyLeuLysGluAspLysAspMetGluAsnIleV : 257 :!!|||||| ! !|||:!:|||!.! |||! ..!|||.!.! !| SerLysLeuAspAspLeuValAspAla------------LysGlyGlnGluGluArgV 233109 : TCGAAATTGGACGATTTGGTGGACGCG------------AAAGGGCAGGAGGAGAGAG : 233156 258 : alHisGluGlnArgLeuGlyAsnIleValGluHisHisLeuHisIleLeu{Gl} >> : 274 || :!!::!!:!|||||| !||||||||||||||||||!.!! !|||{.!} alAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeu{Se}++ 233157 : TCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTA{AG}gt.. : 233211 275 : >> Target Intron 1 >>>> {y}PheIleSerGlnIleGluGluLeuLeuAsn : 284 1315 bp {!}|||||| !!.!.||||||.!.:!!:!!||| ++{r}PheIleArgAsnIleGluAsnValMetAsn 233212 : .......................ag{T}TTTATACGGAATATAGAGAACGTTATGAAC : 234552 285 : GluIleCysPheValGluPheIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrP : 304 !||||||.!.||||||!!.:!!|||||||||||||||!!:|||.!.|||! !|||! LeuIleCysLeuValGluLeuValGlyCysThrLeuAsnMetCysMetLeuGluTyrT 234553 : CTAATATGCCTGGTTGAGTTGGTAGGATGCACGTTGAACATGTGCATGCTCGAGTATT : 234612 305 : heLeuLeuLys >>>> Target Intron 2 >>>> GluTrpGluGlnSerGlu : 313 :!||||||! ! 189 bp ||| ...:::...::: yrLeuLeuThr++ ++GluLysSerLysGluLys 234613 : ATTTACTCACGgt.........................agGAAAAgtcgaaggaaaaa : 234828 314 : ThrIleGlyIleLeuThrTyrCysIleLeuLeuIleSerPheIlePheAsnIlePheI : 333 ::: !:!!||| !|||:!!! !:!:|||.!.! !||||||||||||| ---------LeuAlaSerTyrValIleValTyrValSerMetThrPheAsnIlePheI 234829 : ---------ttagCTTCATACGTCATCGTGTACGTGTCCATGACATTtaatatattca : 234879 334 : leLeuCysTyrIleGlyGluIleLeuSerGluGluCysLysSer{I} >>>> Targ : 348 ||...|||||||||||||||! |||!!!|||:!! !|||{.} lePheCysTyrIleGlyGluThrLeuThrGluGlnValGlySer{P}+- 234880 : tattttgttACATCGGAGAGACGCTTACAGAGCAGGTAGGATCA{T}ga......... : 234927 349 : et Intron 3 >>>> {le}GlyLeuSerAlaTyrMetIleAspTrpHisArgLeu : 360 74 bp {!!}||| !!.!!.!||||||! !!!:|||:!!|||||| ++{he}GlyGluLysValTyrMetThrGluTrpTyrArgLeu 234928 : ................ag{TC}GGAGAAAAAGTGTACATGACCGAATGGTACCGGTTA : 235034 361 : ProGlyLysLysAlaLeuSerLeuIleLeuIleSerAlaAlaSerAsnSerSerThrL : 380 ||| !|||! ||||||.!!|||:!!:!!|||! !:!! !|||!:!! ! !! !| ProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleL 235035 : CCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAA : 235094 381 : ysLeuThrAlaGlyLysLeuValGluLeuSerLeuSerSerPheCysSerVal : 397 ||:!!||||||||||||!!!:!!:!!:!!|||:!!:!!!!!||| !!..!||| ysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235095 : AAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: AmOr35 7 397 . KQ414889.1 232429 235147 + 567 M 67 201 G 1 0 M 49 147 G 3 0 M 37 111 G 1 0 M 18 54 G 0 6 M 63 189 G 4 0 M 23 69 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 33 99 5 0 2 I 0 185 3 0 2 M 6 18 G 3 0 M 31 93 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232430 235147 567 + . gene_id 8 ; sequence AmOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232430 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232430 233208 . + . insertions 6 ; deletions 9 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234924 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234924 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 234925 234926 . + . intron_id 3 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 234925 234998 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 234997 234998 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234999 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234999 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232430 235147 567 + . alignment_id 8 ; Query AmOr35 ; Align 232430 8 201 ; Align 232631 76 147 ; Align 232778 128 111 ; Align 232889 166 54 ; Align 232949 184 189 ; Align 233138 251 69 ; Align 234525 275 99 ; Align 234813 308 18 ; Align 234831 317 93 ; Align 235001 349 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 461 Query range: 17 -> 306 Target range: 266637 -> 267555 18 : TyrSerValGlnIleAsnArgTrpLeuLeuLysAlaIleGlyIleTrpProLeuSerL : 37 ||||||:!!|||:!:|||||||||!!!|||||| !!|||||| !||||||! !! !! TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuS 266638 : TACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGT : 266695 38 : euCysValThrThrThrGluLysIleHisSerValIleLeuThrLeuIleSerIlePh : 56 ! !..!:!!! ! !|||::!||| !||| ! !|||! !:!!|||!!! !! erLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCy 266696 : CACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTG : 266752 57 : eLeuIleGlyPheLeuLeuValProCysThrLeuCysThrLeuLeuAspLysThrGly : 75 !! !||| !||| !:!!:!!|||||| !!!! ! !:!!|||!!: ! ! sSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu--- 266753 : CTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG--- : 266809 76 : AspLeuAspThrLysIleLysMetIleGlyProPheSerPheCysIleMetAlaAlaI : 95 ..!:!! !||||||:!:|||:!!.!!||||||.!.||| !!! .!!:!:!.!!.!| SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266810 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 96 : leLysTyrTyrValLeuLeuSerArgGlySerHisIleGlyLysCysIleGluAspIl : 114 ||!!.||| !..!|||||| !|||.!!!.!.!.||| !! |||:!!||| !!!! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 115 : eArgValAspTrpPheArgValSerSerHisAsnCysLeuGluAspArgLysIleMet : 133 :!:!..!|||||| ! !|||!!!!!!! ||||||!:!:!!:!:||| tGlnThrAspTrpArgIleValThrArgPro---------GluAspLysGlnValMet 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCG---------GAGGACAAGCAGGTGATG : 266971 134 : MetGluAsnAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrS : 153 :!!:!!||||||||||||||||||! !:!!|||||||||||||||!.!|||||| ! ! LeuLysAsnAlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnC 266972 : TTGAAGAACGCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAAT : 267031 154 : erGlyGlyPhePheTyrThrThrValMetProLeuCysThrLysArgThrGluIle<- : 172 !!|||! !.!! !||| !..!:!!! ! !!!!! !! !:!!! !..!|||:!! ysGlyValLeuGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGl 267032 : GCGGTGTTCTCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGG : 267088 173 : >IleAspAsnGluIleValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAsp : 190 ! !!!:!.!..!||||||!.! ! ! !!! ! !!:!!|||!:! !:!!:!!! yAsnGluThrArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAla 267089 : TAACGAGACTAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCA : 267145 191 : ProArgThrSerProSerPheGluIleValGlnLeuMetGlnCysLeuAlaGlyPheV : 210 ! !|||||||||!!! !|||||||||! :!! |||! !:!!:!!||||||: ValAspThrSerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheI 267146 : GTTGATACCAGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCA : 267205 211 : alIleTyrSerValThrValGlySerCysSerLeuAlaAlaValPheValMetHisAl : 229 !!:!: !!||| !..!||||||:!!! !||||||||||||||||||!.! ||||| leValAsnSerSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAl 267206 : TCGTGAATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGC : 267262 230 : aCysGlyGlnPheGlnIleLeuValThrLysLeuArgArgLeuIleAspGlyLeuLys : 248 ||||||||||.!....:!:|||:!!! ! !:!!!:!..!!!!:!::!! aCysGlyGlnLeuSerValLeuMetMetTrpIleLysGluPheValAsn--------- 267263 : GTGCGGACAGCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAAC--------- : 267313 249 : GluAspLysAspMetGluAsnIleValHisGluGlnArgLeuGlyAsnIleValGluH : 268 ..!..!!:!|||! .!.!!.! !||| ! .!.!:!:!!||| :!!||||||| ArgSerArgAspSerAsnLysAsnValCysPheAspLysIleGlyValValValGluH 267314 : CGATCCAGAGATAGCAATAAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAAC : 267370 269 : isHisLeuHisIleLeu{Gl} >>>> Target Intron 1 >>>> {y}PheIl : 276 ||||||||...:!!|||{.!} 69 bp {!}||||| isHisLeuArgValLeu{Se}++ ++{r}PheIl 267371 : ATCATCTGAGAGTTTTG{AG}gt.........................ag{C}TTCAT : 267463 277 : eSerGlnIleGluGluLeuLeuAsnGluIleCysPheValGluPheIleGlyCysThr : 295 |:!!!::||||||...:!!:!!!:!||||||||||||:!!|||!!..!! !|||||| eAlaArgIleGluSerValMetSerGluIleCysPheMetGluLeuPheLysCysThr 267464 : AGCACGTATCGAAAGTGTAATGAGCGAAATTTGCTTCATGGAGTTGTTCAAGTGTACT : 267520 296 : LeuAsnIleCysPheLeuGlyTyrPheLeuLeu : 306 :!!:!!|||||| ! |||.!!|||!:!:!!||| MetAspIleCysValLeuSerTyrTyrIleLeu 267521 : ATGGATATATGCGTGCTTAGCTATTATATCCTT : 267555 vulgar: AmOr35 17 306 . KQ414889.1 266637 267555 + 461 M 57 171 G 1 0 M 49 147 G 3 0 M 44 132 G 0 3 M 74 222 G 3 0 M 25 75 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266638 267555 461 + . gene_id 9 ; sequence AmOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266638 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266638 267389 . + . insertions 3 ; deletions 7 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267555 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266638 267555 461 + . alignment_id 9 ; Query AmOr35 ; Align 266638 18 171 ; Align 266809 76 147 ; Align 266956 128 132 ; Align 267091 172 222 ; Align 267313 249 75 ; Align 267460 275 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 421 Query range: 10 -> 246 Target range: 221357 -> 222056 11 : SerTyrSerLysAspTrpIleTyrSerValGlnIleAsnArgTrpLeuLeuLysAlaI : 30 ..!|||!.!! !:!! !! !! |||||||||:!:!:!||||||:!!|||||| !!| AspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProI 221358 : GATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGA : 221415 31 : leGlyIleTrpProLeuSerLeuCysValThrThrThrGluLysIleHisSerValIl : 49 |||||:!!|||||| !||| ! !:!!:!!|||..!|||!:! !! !! ! !:! leGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLe 221416 : TCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 50 : eLeuThrLeuIleSerIlePheLeuIleGlyPheLeuLeuValProCysThrLeuCys : 68 ::!!!.!:!!:!!!!! ! !|||||| !||||||||||||||||||!:!|||! ! uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 69 : ThrLeuLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProPheS : 88 ..!:!!|||!!: ..!! !|||:!! !!!.!!:!||||||:!!:!:||||||!!.| ValIleLeuGlu---ValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuS 221530 : GTGATCCTCGAA---GTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGA : 221586 89 : erPheCysIleMetAlaAlaIleLysTyrTyrValLeuLeuSerArgGlySerHisIl : 107 ||||||||:!:|||||| !:!!||||||:!!:!!|||:!! ! !! !!:! !!|| erPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIl 221587 : GTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACAT : 221643 108 : eGlyLysCysIleGluAspIleArgValAspTrpPheArgValSerSerHisAsnCys : 126 | !!:!!||||||||| !|||..! !|||||| !.!:!!!!!! ! ! eArgGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSer------ 221644 : CCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCC------ : 221697 127 : LeuGluAspArgLysIleMetMetGluAsnAlaArgIleGlyArgSerLeuAlaIleP : 146 :!!|||!:! ! ||||||!!:|||||||||! !.!!|||||| !!||| !!!:. ---LysAspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetI 221698 : ---AAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGA : 221751 147 : heCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCy : 165 !!|||.!! !||||||||||||||| |||||| !!.!!!:|||!!! ! leCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSe 221752 : TCTGCACATTTTTCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAG : 221808 166 : sThrLysArgThrGluIleIleAsp<->AsnGluIleValArgSerGlnAlaPhePro : 183 !..! !:!! ! ||| ||| !!..!!.!|||||| rValGlyLysIleProAlaGlnAspValAsnValThrPheIleProMetValPhePro 221809 : CGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCT : 221865 184 : IleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnLeuM : 203 .!!! ||| !:!!:!!||| !!||| !|||||| ! !||||||:!! ! !: PheSerArgPheIleValAspThrArgTyrSerProValAsnGluIleLeuPheSerL 221866 : TTCTCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGC : 221925 204 : etGlnCysLeuAlaGlyPheValIleTyrSerValThrValGlySerCysSerLeuAl : 222 !:||| !:!!|||||| !:!!!!::!!|||:!!||| !!.!:!!|||||||||!. euGlnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuVa 221926 : TTCAAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGT : 221982 223 : aAlaValPheValMetHisAlaCysGlyGlnPheGlnIleLeuValThrLysLeuArg : 241 !|||:!!|||!.!:!!|||||||||||||||.!.|||:!:|||:!!!:! !|||!:! lAlaMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLys 221983 : TGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAA : 222039 242 : ArgLeuIleAspGly : 246 !.!||||||:!!||| HisLeuIleAsnGly 222040 : CATTTGATCAACGGC : 222056 vulgar: AmOr35 10 246 . KQ414889.1 221357 222056 + 421 M 62 186 G 1 0 M 51 153 G 3 0 M 46 138 G 0 3 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221358 222056 421 + . gene_id 10 ; sequence AmOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221358 222056 . + . KQ414889.1 exonerate:protein2genome:local exon 221358 222056 . + . insertions 3 ; deletions 4 KQ414889.1 exonerate:protein2genome:local similarity 221358 222056 421 + . alignment_id 10 ; Query AmOr35 ; Align 221358 11 186 ; Align 221544 74 153 ; Align 221697 128 138 ; Align 221838 174 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 419 Query range: 17 -> 348 Target range: 256652 -> 258387 18 : TyrSerValGlnIleAsnArgTrpLeuLeuLysAlaIleGlyIleTrpProLeuSerL : 37 ||||||:!!|||:!:|||||||||!!!|||||| !!|||||| !||||||! !|||! TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerS 256653 : TACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGT : 256710 38 : euCysValThrThrThrGluLysIleHisSerValIleLeuThrLeuIleSerIlePh : 56 !! !..!|||||| !|||::!! ! !|||:!!:!!|||!.!:!!:!!!!! ! erSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGl 256711 : CGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGG : 256767 57 : eLeuIleGlyPheLeuLeuValProCysThrLeuCysThrLeuLeuAspLysThrGly : 75 !! !||| !||| !|||:!!|||||| !||| !..!!!!|||||| !! ! ySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAsp---AspAsp 256768 : TTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGAC---GACGAC : 256821 76 : AspLeuAspThrLysIleLysMetIleGlyProPheSerPheCysIleMetAlaAlaI : 95 ..!!!! ! |||:::||| ...||||||.!.||| !!! |||!!:::!..! SerPheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysA 256822 : AGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTG : 256881 96 : leLysTyrTyrValLeuLeuSerArgGlySerHisIleGlyLysCysIleGluAspIl : 114 !!!.||| :!!||||||! !!:!|||!.! !!||| !! ! |||:!!||| !!|| laAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIl 256882 : CCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATAT : 256938 115 : eArgValAspTrpPheArgValSerSerHisAsnCysLeuGluAspArgLysIleMet : 133 |..!..!|||||| ! !|||!!!!!!.!. :!!|||!:!:!!:!:||| eGluThrAspTrpArgMetValArgArgGlu---------LysAspGlnGlnValMet 256939 : AGAAACGGATTGGAGAATGGTGAGGAGGGAG---------AAGGATCAACAAGTGATG : 256986 134 : MetGluAsnAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrS : 153 |||:!!|||||||||.!!||||||! !:!!|||! !|||||||||!.!.!!||| ! | MetLysAsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnS 256987 : ATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAA : 257046 154 : erGlyGlyPhePheTyrThrThrValMetProLeuCysThrLysArgThrGluIle<- : 172 ||||| ||| ::: ..! ! ! !!||| !|||:!!! !! !.!.:!: erGlyValPheCysPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGl 257047 : GCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGG : 257103 173 : >IleAspAsnGluIleValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAsp : 190 ! !!!:!.. !||||||||| !! ! !! !! !!:!:|||!:! !||||||:!! yAsnGluThrThrIleValArgValLeuProValThrValTyrLysLysLeuLeuAsn 257104 : AAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAAC : 257160 191 : ProArgThrSerProSerPheGluIleValGlnLeuMetGlnCysLeuAlaGlyPheV : 210 ! ! !||||||!!! !||||||||| !!!|||||| !! !:!!..!.!!: ValAspGlnSerProThrAsnGluIleValValPheMetGlnThrTrpSerSerIleI 257161 : GTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTA : 257220 211 : alIleTyrSerValThrValGlySerCysSerLeuAlaAlaValPheValMetHisAl : 229 !! !!!! !||||||.!!! !! !||||||||||||||||||!.!! ||||| leAlaThrThrSerThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAl 257221 : TAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGC : 257277 230 : aCysGlyGlnPheGlnIleLeuValThrLysLeuArgArgLeuIleAspGlyLeuLys : 248 |! !||||||!!. :!:|||:!!:!! !:!!! !..!!!!:!::!! aTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGluPheValAsn--------- 257278 : GTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAAT--------- : 257328 249 : GluAspLysAspMetGluAsnIleValHisGluGlnArgLeuGlyAsnIleValGluH : 268 |||...!:!:!! |||... :!!!:!:!!||| |||||||||| GluSerArgAsnArgGluLysThrPheProPheLysGlnIleGlyValIleValGluH 257329 : GAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGC : 257385 269 : isHisLeuHisIleLeu{Gl} >>>> Target Intron 1 >>>> {y}PheIl : 276 ||||||||...:!:|||{ !} 760 bp {!}! !:! isHisLeuArgValLeu{Ar}++ +-{g}CysVa 257386 : ATCATTTAAGAGTGCTG{AG}gt.........................ac{G}TGCGT : 258169 277 : eSerGlnIleGluGluLeuLeuAsnGluIleCysPheValGluPheIleGlyCysThr : 295 !! ! ! !.!. !|||! !.!..!. !! ! ! !:!! !..!! ! !! lMetTyrArgAsnLeuLeuGlnGlnAsnGly***AsnArgThrTyrAsnAsnPhePro 258170 : TATGTACCGAAACCTGTTGCAACAAAATGGTTAAAATCGTACCTACAATAATTTTCCT : 258226 296 : LeuAsnIleCysPheLeuGlyTyrPheLeuLeuLysGluTrpGluGlnSerGluThrI : 315 :!!:!!! ::: :::::: ...:::||||||... !...::: IleHisSerTyrSerValIlePheTyrTyrPheGlnGluTrpSerThrGlnAspIleG 258227 : ATACACAGctattctgttattttttattattttcaggaATGGTCTACGCaagatattc : 258286 316 : leGlyIleLeuThrTyrCysIleLeuLeuIleSerPheIlePheAsnIlePheIleLe : 334 ...::: :::|||! !!!::!!|||||||||... ||||||||||||::::: lnAsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValIl 258287 : aaaatttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaat : 258343 335 : uCysTyrIleGlyGluIleLeuSerGluGluCysLysSerIle : 348 :|||||||||||||||||||||!!!|||:!! ...||| eCysTyrIleGlyGluIleLeuThrGluGlnValProGluIle 258344 : atgttACATAGGTGAAATATTAACAGAACAGGTACCagagatt : 258387 vulgar: AmOr35 17 348 . KQ414889.1 256652 258387 + 419 M 55 165 G 1 0 M 51 153 G 3 0 M 44 132 G 0 3 M 74 222 G 3 0 M 25 75 S 0 2 5 0 2 I 0 756 3 0 2 S 1 1 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256653 258387 419 + . gene_id 11 ; sequence AmOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256653 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256653 257404 . + . insertions 3 ; deletions 7 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 258164 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258163 258164 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 258165 258387 . + . KQ414889.1 exonerate:protein2genome:local exon 258165 258387 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256653 258387 419 + . alignment_id 11 ; Query AmOr35 ; Align 256653 18 165 ; Align 256818 74 153 ; Align 256971 128 132 ; Align 257106 172 222 ; Align 257328 249 75 ; Align 258166 275 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 393 Query range: 10 -> 249 Target range: 212851 -> 213559 11 : SerTyrSerLysAspTrpIleTyrSerValGlnIleAsnArgTrpLeuLeuLysAlaI : 30 !!!|||..!||| |||::: ! |||||||||||||||||| !!! ThrTyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProT 212852 : ACCTACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAA : 212909 31 : leGlyIleTrpProLeuSerLeuCysValThrThrThrGluLysIleHisSerValIl : 49 |||:!:|||||| !!.!! !! !|||:!! !!! !||||||! ! !:!! !:! hrGlyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIleAlaArgLe 212910 : CGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATT : 212966 50 : eLeuThrLeuIleSerIlePheLeuIleGlyPheLeuLeuValProCysThrLeuCys : 68 ::!!!.! !:!!!!! ! !|||||||||!:!|||:!!:!!||||||!:!|||! ! uValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyr 212967 : GGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTAC : 213023 69 : ThrLeuLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProPheS : 88 ..!!!!|||||| ..! :::::: :::|||:!!:!!.!!||| !|||: ValPheLeuAsp---ValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheA 213024 : GTGTTCCTCGAC---GTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTG : 213080 89 : erPheCysIleMetAlaAlaIleLysTyrTyrValLeuLeuSerArgGlySerHisIl : 107 !!||||||:!: ||| ! ||||||:!! !|||:!! !!.!|||..! !!|| laPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIl 213081 : CATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATAT : 213137 108 : eGlyLysCysIleGluAspIleArgValAspTrpPheArgValSerSerHisAsnCys : 126 | !!! !|||:!!||| !!!!:!:! !|||||| !.!:!!!!! !.!. eArgThrCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGlu------ 213138 : TCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAG------ : 213191 127 : LeuGluAspArgLysIleMetMetGluAsnAlaArgIleGlyArgSerLeuAlaIleP : 146 ||||||!:!:!!|||||| ! !||||||!!!.!!|||!:!!!!:!!!.!! !. ---GluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrI 213192 : ---GAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAA : 213245 147 : heCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCy : 165 !!|||||| !|||||||||!!!||| ! |||||| ! !|||:!:|||:!! ! leCysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuValValProIleSe 213246 : TTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAG : 213302 166 : sThrLysArgThrGluIleIleAsp<->AsnGluIleValArgSerGlnAlaPhePro : 183 !.!! ! !:!! !! ! ||| |||! !! ! !!|||..!..!!.! !!||| rAlaAspLysMetValAlaGluAspLeuAsnValThrPheArgGlnMetValValPro 213303 : CGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCT : 213359 184 : IleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnLeuM : 203 :!!! ||| !:!!:!!||| !||| !|||||| ! !|||||| !! |||! ValSerArgPheIleValAspValArgTyrSerProValAsnGluIlePhePheLeuI 213360 : GTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGA : 213419 204 : etGlnCysLeuAlaGlyPheValIleTyrSerValThrValGlySerCysSerLeuAl : 222 !:||| !:!!|||||| ! :!!|||:!!:!!:!!.!!|||! !:!!||||||||||| leGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAl 213420 : TTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGC : 213476 223 : aAlaValPheValMetHisAlaCysGlyGlnPheGlnIleLeuValThrLysLeuArg : 241 ||||||||||!.!:!:|||||||||||||||.!. ||||||:!!!:! !|||..! aAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGlu 213477 : AGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAA : 213533 242 : ArgLeuIleAspGlyLeuLysGlu : 249 !.!|||||||||||| !:!!!!: HisLeuIleAspGlyArgGluAsp 213534 : CATTTGATAGACGGTAGAGAGGAT : 213559 vulgar: AmOr35 10 249 . KQ414889.1 212851 213559 + 393 M 62 186 G 1 0 M 51 153 G 3 0 M 46 138 G 0 3 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212852 213559 393 + . gene_id 12 ; sequence AmOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212852 213559 . + . KQ414889.1 exonerate:protein2genome:local exon 212852 213559 . + . insertions 3 ; deletions 4 KQ414889.1 exonerate:protein2genome:local similarity 212852 213559 393 + . alignment_id 12 ; Query AmOr35 ; Align 212852 11 186 ; Align 213038 74 153 ; Align 213191 128 138 ; Align 213332 174 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 376 Query range: 17 -> 344 Target range: 262849 -> 264648 18 : TyrSerValGlnIleAsnArgTrpLeuLeuLysAlaIleGlyIleTrpProLeuSerL : 37 ||||||:!!|||||||||||||||||||||||| !!|||||| !|||||||||||| TyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerA 262850 : TACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCG : 262907 38 : euCysValThrThrThrGluLysIleHisSerValIleLeuThrLeuIleSerIlePh : 56 !! :!!:!!! !! !|||::!||| !!!! !!:!!|||! !:!!:!!!!! !! laSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCy 262908 : CCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTG : 262964 57 : eLeuIleGlyPheLeuLeuValProCysThrLeuCysThrLeuLeuAspLysThrGly : 75 !|||||| !! ! !:!!:!!|||! !! !||| !! !:!!|||!!: .!!! ! sLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGlu---AlaGlu 262965 : TCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAA---GCCGAG : 263018 76 : AspLeuAspThrLysIleLysMetIleGlyProPheSerPheCysIleMetAlaAlaI : 95 :!!!!! !!! !|||:!::!!:!::!!||||||.!!.!! !! .!!:!:!.! !| AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 96 : leLysTyrTyrValLeuLeuSerArgGlySerHisIleGlyLysCysIleGluAspIl : 114 ||!!.||| ! !|||||| !!.!.!!!.! !!||| ! |||:!::!! !!:! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 115 : eArgValAspTrpPheArgValSerSerHisAsnCysLeuGluAspArgLysIleMet : 133 :!:!! !||||||! !! !|||!!!!!! |||||||||!:!:::|||||| lGlnGluAspTrpCysIleValThrArg---------LeuGluAspGlnArgIleMet 263136 : GCAGGAAGACTGGTGTATCGTGACCAGG---------TTGGAGGATCAACGTATCATG : 263183 134 : MetGluAsnAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrS : 153 :!!:!!||||||!:! !||||||! !:!!||| !! !|||||| !|||||| ! ! LeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnT 263184 : CTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAA : 263243 154 : erGlyGlyPhePheTyrThrThrValMetProLeuCysThrLysArgThrGluIle<- : 172 !!.!! !.!.! ! ! ! !|||! !!!!! !|||:!! !! !||| ! hrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGl 263244 : CGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGG : 263300 173 : >IleAspAsnGluIleValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAsp : 190 ! !!!:!.!..!|||:!!|||! !! ! !!! !|||:!:|||!:!! !:!!:!! yAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLysGluIleIlePro 263301 : TAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCA : 263357 191 : ProArgThrSerProSerPheGluIleValGlnLeuMetGlnCysLeuAlaGlyPheV : 210 ! !|||!:!|||!!! !|||||| !!! !! !|||! !|||:!!||||||: ValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheI 263358 : GTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCA : 263417 211 : alIleTyrSerValThrValGlySerCysSerLeuAlaAlaValPheValMetHisAl : 229 !!:!! !:!!..!|||||||||:!!! !.!!:!!.!!|||||||||!.! ||||| leValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAl 263418 : TCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGC : 263474 230 : aCysGlyGlnPheGlnIleLeuValThrLysLeuArgArgLeuIleAspGlyLeuLys : 248 ||||||||||!!..!.:!:|||:!!:!! !:!!! !..!!!!:!::!! aCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAsn--------- 263475 : TTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAAC--------- : 263525 249 : GluAspLysAspMetGluAsnIleValHisGluGlnArgLeuGlyAsnIleValGluH : 268 :!!..!!:!||| !.!.!!.! !:!!:!! ..!:!!||| |||||||||| GlnSerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValGluH 263526 : CAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAAC : 263582 269 : isHisLeuHisIleLeu{Gl} >>>> Target Intron 1 >>>> {y}PheIl : 276 ||||||||...:!!|||{.!} 828 bp {!} !.! isHisLeuArgValLeu{Se}++ +-{r}AsnPh 263583 : ATCATCTGAGAGTTCTG{AG}gt.........................at{T}AACTT : 264434 277 : eSerGlnIleGluGluLeuLeuAsnGluIleCysPheValGluPheIleGlyCysThr : 295 !! !...|||! !:!!:!!:!!! ::: |||||| |||! !! !||| !! eLeuSerIleAlaGlnIleValIleLysThrIlePheValTyrPheSerValCysPro 264435 : TTTATCTATTGCACAAATTGTGATAAagacaatttttgtttacttcAGTGTTTGTCCA : 264491 296 : ----LeuAsnIleCysPhe----LeuGlyTyrPheLeuLeuLysGluTrpGluGlnSe : 312 ####! !|||||||||.!.####:!! ! ! !:!!!!!:!!|||||||||... ####TyrAsnIleCysMet####IleThrIleAspValPheGlnGluTrpGluSerHi 264492 : GGGATATAATATTTGTATGAAATATAACAATTGACGTTTTTCAGGAATGGGAAAGTCA : 264550 313 : rGluThrIleGlyIleLeuThrTyrCysIleLeuLeuIleSerPheIlePheAsnIle : 331 ::: ...::: !||||||! !!!::!!|||||||||.!. ! !|||||| sAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerMetCysGlyAsnIle 264551 : tgatattcaaaatttgacTACATATTTCATGATACTGATATCAATGTGCGGCAACATT : 264607 332 : PheIleLeuCysTyrIleGlyGluIleLeuSerGluGlu : 344 |||:!!:!!|||||||||||||||||||||!!!|||::: PheLeuMetCysTyrIleGlyGluIleLeuThrGluGln 264608 : TTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcag : 264648 vulgar: AmOr35 17 344 . KQ414889.1 262849 264648 + 376 M 55 165 G 1 0 M 50 150 G 3 0 M 45 135 G 0 3 M 74 222 G 3 0 M 25 75 S 0 2 5 0 2 I 0 824 3 0 2 S 1 1 M 21 63 F 0 4 M 5 15 F 0 4 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262850 264648 376 + . gene_id 13 ; sequence AmOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262850 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262850 263601 . + . insertions 3 ; deletions 7 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 264429 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264428 264429 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 264430 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264430 264648 . + . insertions 0 ; deletions 0 ; frameshifts 8 KQ414889.1 exonerate:protein2genome:local similarity 262850 264648 376 + . alignment_id 13 ; Query AmOr35 ; Align 262850 18 165 ; Align 263015 74 150 ; Align 263165 127 135 ; Align 263303 172 222 ; Align 263525 249 75 ; Align 264431 275 63 ; Align 264498 296 15 ; Align 264517 301 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 326 Query range: 17 -> 273 Target range: 274383 -> 275133 18 : TyrSerValGlnIleAsnArgTrpLeuLeuLysAlaIleGlyIleTrpProLeuSerL : 37 ||||||:!!|||:!:|||||||||!!!|||||| !!|||||| |||||||||:!!! TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaS 274384 : TACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCT : 274441 38 : euCysValThrThrThrGluLysIleHisSerValIleLeuThrLeuIleSerIlePh : 56 ! !..!|||! ! !|||::!|||! !||| !:::||| ...::: !! erProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCy 274442 : CGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTG : 274498 57 : eLeuIleGlyPheLeuLeuValProCysThrLeuCysThrLeuLeuAspLysThrGly : 75 !!!!||| !! ! !:!!:!!||| !!! !!!! !! !:!!||| ! !! ! sPheIleLeuSerThrValIleProSerIlePheHisIleIleLeu---ValAspGlu 274499 : CTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTA---GTAGATGAA : 274552 76 : AspLeuAspThrLysIleLysMetIleGlyProPheSerPheCysIleMetAlaAlaI : 95 ..!||| !! !|||:!:|||:!!:!!||||||.!!.!! !!! .!!!!:!.!!.!| SerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyI 274553 : AGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAA : 274612 96 : leLysTyrTyrValLeuLeuSerArgGlySerHisIleGlyLysCysIleGluAspIl : 114 ||!!.||| !..!|||||| !|||.!!!.!.!.||| !! |||:!:||| !!!! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 274613 : TTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACAT : 274669 115 : eArgValAspTrpPheArgValSerSerHisAsnCysLeuGluAspArgLysIleMet : 133 :!:!..!|||||| ! !|||!!!!!!! ||||||!:!:!!:!:||| tGlnThrAspTrpArgIleValThrArgPro---------GluAspGlnGlnValMet 274670 : GCAAACAGATTGGAGGATCGTGACCAGACCG---------GAGGATCAACAAGTGATG : 274717 134 : MetGluAsnAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrS : 153 :!!:!!||||||!:!|||||||||! !:!!|||||||||||||||!.!|||||| ! ! LeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnC 274718 : TTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAAT : 274777 154 : erGlyGlyPhePheTyrThrThrValMetProLeuCysThrLysArgThrGluIle<- : 172 !!|||! !.!!! !||| !..!:!!! !!!!! !! !:!!! !..!:!!:!! ysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGl 274778 : GCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGG : 274834 173 : >IleAspAsnGluIleValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAsp : 190 ! !!!:!.!..!! !|||!.!! ! ! !!! ! ! !|||!:! !:!!:!!! yAsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAla 274835 : GAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCG : 274891 191 : ProArgThrSerProSerPheGluIleValGlnLeuMetGlnCysLeuAlaGlyPheV : 210 ! !|||||||||!!! !|||||||||! ! !|||! !:!!:!!||||||: ValAspThrSerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheI 274892 : GTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTA : 274951 211 : alIleTyrSerValThrValGlySerCysSerLeuAlaAlaValPheValMetHisAl : 229 !!:!: !!||| !.!!||||||:!!! !||||||||||||||||||!.! ||||| leValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAl 274952 : TCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGC : 275008 230 : aCysGlyGlnPheGlnIleLeuValThrLysLeuArgArgLeuIleAspGlyLeuLys : 248 |! !||||||!!....:!:|||:!!! ! !:!!! !..!!!!:!::!! aTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheValAsn--------- 275009 : TTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAAT--------- : 275059 249 : GluAspLysAspMetGluAsnIleValHisGluGlnArgLeuGlyAsnIleValGluH : 268 .!...!!:!|||......... |||::: .....!:!!||| :!!||||||| HisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValValValGluH 275060 : CATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAAC : 275116 269 : isHisLeuHisIleLeu : 273 ||||||||...:!!||| isHisLeuArgValLeu 275117 : ATCATCTGAGGGTACTC : 275133 vulgar: AmOr35 17 273 . KQ414889.1 274383 275133 + 326 M 54 162 G 1 0 M 52 156 G 3 0 M 44 132 G 0 3 M 74 222 G 3 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274384 275133 326 + . gene_id 14 ; sequence AmOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274384 275133 . + . KQ414889.1 exonerate:protein2genome:local exon 274384 275133 . + . insertions 3 ; deletions 7 KQ414889.1 exonerate:protein2genome:local similarity 274384 275133 326 + . alignment_id 14 ; Query AmOr35 ; Align 274384 18 162 ; Align 274546 73 156 ; Align 274702 128 132 ; Align 274837 172 222 ; Align 275059 249 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 313 Query range: 2 -> 245 Target range: 204191 -> 204905 3 : ValLeuLysAspSerSerSerValSerTyrSerLysAspTrpIleTyrSerValGlnI : 22 ..!:!!||| |||.!!! !!.!!!! ..!:!!||| !! !|||:!!..!!::. ThrMetLysMetSerGlyIleAlaArgAlaGluGluAspLeuArgTyrAlaThrArgP 204192 : ACGATGAAAATGTCTGGAATCGCGAGGGCAGAAGAGGACCTGAGATACGCGACACGTT : 204249 23 : leAsnArgTrpLeuLeuLysAlaIleGlyIleTrpProLeuSerLeuCysValThrTh : 41 !! !:! !:!!||| ! !:!!||| ||||||:!! !!:!! ! !:!! ! heValLysProIleLeuGlyIleValGlyAlaTrpProIleProValAsnSerSerPr 204250 : TCGTGAAGCCGATTTTAGGGATAGTCGGTGCGTGGCCGATTCCAGTGAACTCCTCTCC : 204306 42 : rThrGluLysIleHisSerValIleLeuThrLeuIleSerIlePheLeuIleGlyPhe : 60 ! ! !!:!:!! !! !||| ! !:!!:!!!!! ||||||... ... oPheThrArgLeuValArgArgIleGluHisValValThrTyrPheLeuPhePheLeu 204307 : GTTCACGAGGCTAGTACGGCGAATAGAACACGTAGTCACCtatttcctcttctttctg : 204363 61 : LeuLeuValProCysThrLeuCysThrLeuLeuAspLysThrGlyAspLeuAspThrL : 80 :!!:!!|||||| !! !|||! !..!!!!||| ||| ! !:!! ! ! ! !: MetIleValProGlyLeuLeuTyrValPheLeu---LysGluLysAsnGlyLysIleA 204364 : aTGATCGTACCTGGCCTCTTGTACGTGTTCCTG---AAGGAGAAGAACGGCAAAATTC : 204420 81 : ysIleLysMetIleGlyProPheSerPheCysIleMetAlaAlaIleLysTyrTyrVa : 99 :::!:|||!!::!!||||||.!! ! !|||! !!!: ! !.!!||||||! !|| rgLeuLysIleLeuGlyProIleValAsnCysSerIleGlnPhePheLysTyrSerVa 204421 : GCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCATACAGTTCTTCAAGTACTCCGT : 204477 100 : lLeuLeuSerArgGlySerHisIleGlyLysCysIleGluAspIleArgValAspTrp : 118 |:!!|||! !||| !..! ! ||| !||| !!:!:.!. !|||||| !|||||| lIleLeuTyrArgIleAspLysIleGlnLysSerLeuAsnThrIleArgArgAspTrp 204478 : CATTCTCTACCGGATCGACAAAATTCAGAAGAGTTTGAACACCATCAGACGCGACTGG : 204534 119 : PheArgValSerSerHisAsnCysLeuGluAspArgLysIleMetMetGluAsnAlaA : 138 .!...!!.!!!!..! |||:!!||| !|||.!. ..!!!.|||! IleGluAlaThrAsp------------GluAsnArgLeuIlePheArgSerLysAlaL 204535 : ATAGAGGCTACGGAT------------GAAAATCGGTTGATTTTCCGCTCGAAAGCGA : 204582 139 : rgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePh : 157 :!|||||||||!!!:!! !:!:.!!...|||!.! !||||||.!!||||||!!.! ysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetTyrGlyGlyGlyLeuCy 204583 : AGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGTACGGCGGTGGTTTGTG : 204639 158 : eTyrThrThrValMetProLeuCysThrLysArgThrGluIleIleAspAsnGluIle : 176 !|||! !|||:!!:!:||||||! ! ! !! !! !! !! ! !||||||! ! ! sTyrArgThrIleLeuProLeuLeuArgGlyThrIleValThrProAspAsnValThr 204640 : TTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTAACACCTGATAACGTTACC : 204696 177 : ValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProS : 196 :!!||| !! ! !!! !|||:!!||| ......::: !!:! !||||||! IleArgProLeuProCysProValTyrPheValPhePheAsnGluGlnArgSerProA 204697 : ATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaacGAGCAACGTTCGCCGA : 204756 197 : erPheGluIleValGlnLeuMetGlnCysLeuAlaGlyPheValIleTyrSerValTh : 215 :!!:!||||||||| :!!:!!||| !:!!||||||||||||! !|||:!!|||! snTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheValThrTyrAlaValIl 204757 : ATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTGTTACTTACGCTGTTAT : 204813 216 : rValGlySerCysSerLeuAlaAlaValPheValMetHisAlaCysGlyGlnPheGln : 234 ! !|||!!!|||.!!:!!..!|||:!!||||||:!:|||||||||.!!..!.!.::! eSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAlaCysSerMetLeuArg 204814 : CAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGCGTGCAGCATGCTGAGG : 204870 235 : IleLeuValThrLysLeuArgArgLeuIleAsp : 245 |||||||||!.!|||:!!!.! !|||:!:||| IleLeuValAsnLysMetAsnAlaLeuValAsp 204871 : ATTTTGGTGAACAAGATGAACGCACTTGTGGAT : 204905 vulgar: AmOr35 2 245 . KQ414889.1 204191 204905 + 313 M 69 207 G 1 0 M 51 153 G 4 0 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204192 204905 313 + . gene_id 15 ; sequence AmOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204192 204905 . + . KQ414889.1 exonerate:protein2genome:local exon 204192 204905 . + . insertions 0 ; deletions 5 KQ414889.1 exonerate:protein2genome:local similarity 204192 204905 313 + . alignment_id 15 ; Query AmOr35 ; Align 204192 3 207 ; Align 204399 73 153 ; Align 204552 128 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 294 Query range: 284 -> 412 Target range: 301617 -> 302163 285 : GluIleCysPheValGluPheIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrP : 304 .!.:!!||| ||| ... ||||||||| ! |||||| !! . HisLeuCysAlaValIleLysPheGluSerThrLeuAsnAlaLysPheLeuArgValI 301618 : CATCTCTGCgctgtaattaaatttgaatctACTTTAAATGCAAAGTTTTTACGAGTAA : 301675 305 : heLeuLeuLysGluTrpGluGlnSerGluThrIleGlyIleLeuThrTyrCysIleLe : 323 !!! !!!! !!||||||:!!.!.|||!!:||||||!.!!!:||||||!:!! !! !|| le***Phe***GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLe 301676 : TTTGATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCT : 301732 324 : uLeuIleSerPheIlePheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuSer : 342 ||||! ||||||! !|||||||||||||||!!!|||||||||||||||||||||||| uLeuThrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSer 301733 : GTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCC : 301789 343 : GluGlu >>>> Target Intron 1 >>>> CysLysSerIleGlyLeuSerAl : 352 |||:!! 80 bp |||!....!||||||! !:!!:! GluGln++ ++CysSerGlnIleGlySerAlaSe 301790 : GAACAGgt.........................agTGTAGCCAAATTGGTTCAGCATC : 301899 353 : aTyrMetIleAspTrpHisArgLeuProGlyLysLysAlaLeuSerLeuIleLeuIle : 371 !||| !|||||||||:!!!.!||||||!.!|||!:!|||! !..!|||||||||:!! rTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeu 301900 : GTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTT : 301956 372 : SerAlaAlaSerAsnSerSerThrLysLeuThrAlaGlyLysLeuValGluLeuSerL : 391 |||!.! !|||.!.! ! !! !!||||||||||||||||||:!!:!!!!:||||||| SerValIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerL 301957 : AGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCT : 302016 392 : euSerSerPheCysSer >>>> Target Intron 2 >>>> ValLeuLysSer : 400 ||!:!!!!||| !!||| 82 bp |||:!!|||!!! euAsnThrPheSerSer++ ++ValValLysThr 302017 : TGAATACATTCAGCTCTgt.........................agGTGGTGAAAACA : 302125 401 : SerLeuAlaTyrLeuSerLeuLeuArgThrLeuThr : 412 |||:!!!.!||||||!:!||||||||||||:!!||| SerValValTyrLeuAsnLeuLeuArgThrValThr 302126 : TCGGTGGTGTACTTGAATTTACTGCGAACAGTTACA : 302163 vulgar: AmOr35 284 412 . KQ414889.1 301617 302163 + 294 M 60 180 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301618 302163 294 + . gene_id 16 ; sequence AmOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301618 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301618 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302163 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302163 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301618 302163 294 + . alignment_id 16 ; Query AmOr35 ; Align 301618 285 180 ; Align 301878 345 156 ; Align 302116 397 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 236 Query range: 305 -> 412 Target range: 224317 -> 224770 306 : LeuLysGluTrpGluGlnSerGluThrIleGlyIleLeuThrTyrCysIleLeuLeuI : 325 !!!:::||||||......|||.!. !! !.!! :!!||||||! !|||||||||! PheGlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuM 224318 : TTTCaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCA : 224375 326 : leSerPheIlePheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuSerGluGl : 344 !:|||... |||||||||||||||...|||||||||||||||:!::!!:!!|||:: etSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl 224376 : TGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAca : 224432 345 : uCysLys{S} >>>> Target Intron 1 >>>> {er}IleGlyLeuSerAla : 352 : |||{!} 65 bp {.!}|||||| ! !:!! nValLys{L}-+ +-{ys}IleGlyGlnValSer 224433 : ggtgaaa{a}at.........................aa{aa}attggacaAGTGTCG : 224521 353 : TyrMetIleAspTrpHisArgLeuProGlyLysLysAlaLeuSerLeuIleLeuIleS : 372 |||||||||||||||:!!|||||| !!|||!!.||| !|||!!!! !|||||||||! TyrMetIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleI 224522 : TACATGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAA : 224581 373 : erAlaAlaSerAsnSerSerThrLysLeuThrAlaGlyLysLeuValGluLeuSerLe : 391 !||| !||||||||||||! !|||||||||||||||!!.:!!|||||||||!!!|| leAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLe 224582 : TCGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCT : 224638 392 : uSerSerPheCysSer >>>> Target Intron 2 >>>> ValLeuLysSerS : 401 |!!!!!!||| !!..! 67 bp |||:!!|||!!!: uThrThrPheGlyAsp++ ++ValValLysThrA 224639 : AACCACTTTCGGTGACgt.........................agGTTGTCAAGACAG : 224735 402 : erLeuAlaTyrLeuSerLeuLeuArgThrLeuThr : 412 !!:!!|||!:!|||!:!:!!||||||||||||||| laValAlaPheLeuAsnValLeuArgThrLeuThr 224736 : CTGTCGCATTTTTGAACGTGTTACGAACATTGact : 224770 vulgar: AmOr35 305 412 . KQ414889.1 224317 224770 + 236 M 41 123 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 49 147 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224318 224770 236 + . gene_id 17 ; sequence AmOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224318 224441 . + . KQ414889.1 exonerate:protein2genome:local exon 224318 224441 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224442 224443 . + . intron_id 1 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local intron 224442 224506 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224505 224506 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 224507 224655 . + . KQ414889.1 exonerate:protein2genome:local exon 224507 224655 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224656 224657 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224656 224722 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 224721 224722 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 224723 224770 . + . KQ414889.1 exonerate:protein2genome:local exon 224723 224770 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224318 224770 236 + . alignment_id 17 ; Query AmOr35 ; Align 224318 306 123 ; Align 224509 348 147 ; Align 224723 397 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 210 Query range: 307 -> 397 Target range: 206050 -> 206401 308 : GluTrpGluGlnSerGluThrIleGlyIleLeuThrTyrCysIleLeuLeuIleSerP : 327 |||||||||.!.!:!.!.|||! !!.!:!!:!!..!||| !! |||! !||||||! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 328 : heIlePheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuSerGluGlu >>> : 345 !! !||| !:!!|||||||||||||||||||||:!!:!!|||! !!!::!! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 346 : > Target Intron 1 >>>> CysLysSerIleGlyLeuSerAlaTyrMetIleA : 356 81 bp ! ! !:!:||||||!!!:!!! !! !:!:: ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 357 : spTrpHisArgLeuProGlyLysLysAlaLeuSerLeuIleLeuIleSerAlaAlaSe : 375 !!|||:!!|||||||||..!!:! ! |||! !|||:!!|||||||||! !||| !|| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 376 : rAsnSerSerThrLysLeuThrAlaGlyLysLeuValGluLeuSerLeuSerSerPhe : 394 ||||! ! !!! !||||||||||||||||||:!! !!|||:!!||||||:!!|||||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 395 : CysSerVal : 397 !..!||| ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: AmOr35 307 397 . KQ414889.1 206050 206401 + 210 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 210 + . gene_id 18 ; sequence AmOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 210 + . alignment_id 18 ; Query AmOr35 ; Align 206051 308 111 ; Align 206243 345 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 207 Query range: 307 -> 397 Target range: 277371 -> 277713 308 : GluTrpGluGlnSerGluThrIleGlyIleLeuThrTyrCysIleLeuLeuIleSerP : 327 ||||||....!.|||!!:..! !!!: !|||:!!! !!!::!!|||||||||. GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 328 : heIlePheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuSerGluGlu >>> : 345 !. |||||||||||| !:!!|||||||||||||||||||||!!!|||:!! etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 346 : > Target Intron 1 >>>> CysLysSerIleGlyLeuSerAlaTyrMetIleA : 356 72 bp ||||||!.!:!!||| ! !!.!||||||! : ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 357 : spTrpHisArgLeuProGlyLysLysAlaLeuSerLeuIleLeuIleSerAlaAlaSe : 375 !!|||:!! !||||||! !||| ! !|||!:!|||:!!||||||! !:!! !|| snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 376 : rAsnSerSerThrLysLeuThrAlaGlyLysLeuValGluLeuSerLeuSerSerPhe : 394 |!:! |||:::|||||||||||||||:::::::::|||:!!! !!!!||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 395 : CysSerVal : 397 !!..!||| GlyAspVal 277703 : GGCGATGTA : 277713 vulgar: AmOr35 307 397 . KQ414889.1 277371 277713 + 207 M 37 111 5 0 2 I 0 68 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277713 207 + . gene_id 19 ; sequence AmOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277713 207 + . alignment_id 19 ; Query AmOr35 ; Align 277372 308 111 ; Align 277555 345 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 202 Query range: 307 -> 397 Target range: 272836 -> 273176 308 : GluTrpGluGlnSerGluThrIleGlyIleLeuThrTyrCysIleLeuLeuIleSerP : 327 |||||| .!. !!!: ! .!!:!! !||||||! !!!::!!|||||||||. GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 328 : heIlePheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuSerGluGlu >>> : 345 !. |||||||||||||||::!|||||||||||||||||||||!!!|||..! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 346 : > Target Intron 1 >>>> CysLysSerIleGlyLeuSerAlaTyrMetIleA : 356 70 bp ||||||...|||||| ! !!.!||||||! : ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 357 : spTrpHisArgLeuProGlyLysLysAlaLeuSerLeuIleLeuIleSerAlaAlaSe : 375 !!|||:!! !|||||||||||| ! !|||..!||||||||||||! !:!! !!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 376 : rAsnSerSerThrLysLeuThrAlaGlyLysLeuValGluLeuSerLeuSerSerPhe : 394 !!:! ! !! !|||:!!|||||||||!:!:!!||| :!!|||:!!! !!!!||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 395 : CysSerVal : 397 !!..!||| GlyAspVal 273166 : GGCGATGTA : 273176 vulgar: AmOr35 307 397 . KQ414889.1 272836 273176 + 202 M 37 111 5 0 2 I 0 66 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273176 202 + . gene_id 20 ; sequence AmOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273176 202 + . alignment_id 20 ; Query AmOr35 ; Align 272837 308 111 ; Align 273018 345 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 193 Query range: 307 -> 403 Target range: 238411 -> 238805 308 : GluTrpGluGlnSerGluThrIleGlyIleLeuThrTyrCysIleLeuLeuIleSerP : 327 ||||||! !:!!|||!!:.!!! ! !:!!:!!||||||! !:!! !|||:!!:!!. GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheValAlaLeuValAlaI 238412 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTGTAGCACTCGTTGCTA : 238469 328 : heIlePheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuSerGluGlu >>> : 345 !!:!!! !|||! !||||||||||||||||||.!!|||! |||!!!|||:!! leValSerAsnThrPheIleLeuCysTyrIleSerGluArgLeuThrGluGln++ 238470 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGAAAGGCTGACAGAACAGgt... : 238525 346 : > Target Intron 1 >>>> CysLysSerIleGlyLeuSerAlaTyrMetIleA : 356 106 bp ||| !!.!:!!||| ! !!.!||||||! !| ++CysLeuLysValGlyGluValValTyrMetThrA 238526 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 238662 357 : spTrpHisArgLeuProGlyLysLysAlaLeuSerLeuIleLeuIleSerAlaAlaSe : 375 |||||:!! !|||||| !!:!!:! !|||..!||||||||||||! ! ! !|| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSe 238663 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATC : 238719 376 : rAsnSerSerThrLysLeuThrAlaGlyLysLeuValGluLeuSerLeuSerSerPhe : 394 |||| ! !..!|||:!!||||||||||||:!!:!!.!.:!!||||||! !!!!||| rAsnValValValLysValThrAlaGlyLysValLeuHisMetSerLeuTyrThrPhe 238720 : GAACGTGGTCGTTAAAGTCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTC : 238776 395 : CysSerValLeuLysSerSerLeuAla : 403 !!..!||| !:!!!!!!:!|||||| GlyAspValSerGluThrAsnLeuAla 238777 : GGCGATGTAAGTGAAACTAATCTTGCT : 238805 vulgar: AmOr35 307 403 . KQ414889.1 238411 238805 + 193 M 37 111 5 0 2 I 0 102 3 0 2 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238412 238805 193 + . gene_id 21 ; sequence AmOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 238412 238522 . + . KQ414889.1 exonerate:protein2genome:local exon 238412 238522 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238523 238524 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238523 238628 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 238627 238628 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238629 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238629 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238412 238805 193 + . alignment_id 21 ; Query AmOr35 ; Align 238412 308 111 ; Align 238629 345 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 182 Query range: 13 -> 201 Target range: 294675 -> 295230 14 : LysAspTrpIleTyrSerValGlnIleAsnArgTrpLeuLeuLysAlaIleGlyIleT : 33 !!.||| ! !!|||:!!:!! ! !||| !!||||||||| !!||||||:!!| AsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuT 294676 : AACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTT : 294733 34 : rpProLeuSerLeuCysValThrThr<->ThrGluLysIleHisSerValIleLeuTh : 51 ||||||||! !! ! !! !|||!:! !.!.|||:!!! !|||:!!||||||! rpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIl 294734 : GGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGAT : 294790 52 : rLeuIleSerIlePheLeuIleGlyPheLeuLeuValProCysThrLeuCysThrLeu : 70 ! ! !!!! !!. !:!! !|||:!!|||||||||||| !! !! ! !:!! eAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCysVal 294791 : CGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTA : 294847 71 : LeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProPheSerPheC : 90 !!! ! ... :::::: |||!!:|||:!::!:|||||| ! !!:!! Phe---HisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrS 294848 : TTC---CACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACT : 294904 91 : ysIleMetAlaAlaIleLysTyrTyrValLeuLeuSerArgGlySerHisIleGlyLy : 109 !!!::!::!! !:!!!:!||| ! !|||:!!! !!:! ! !! .!! ! ! erMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHi 294905 : CTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCA : 294961 110 : sCysIleGluAspIleArgValAspTrpPheArgValSerSerHisAsnCysLeuGlu : 128 |||||||||||||||..! !|||||| !:!!..!!:!! ||| sCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnPro---------Glu 294962 : TTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCG---------GAA : 295009 129 : AspArgLysIleMetMetGluAsnAlaArgIleGlyArgSerLeuAlaIlePheCysA : 148 !!||| !||||||!!::!!||||||! !:!! !!:!!!!:!!.!!:!! !! !. HisArgAlaIleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheT 295010 : CACCGAGCGATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTA : 295069 149 : laGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysThrLy : 167 !! !.!.!!:||||||..!!.! ! ! ||| !.!!:!!:::|||... :::.. hrIleIleIleTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAs 295070 : CTATTATAATCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaa : 295126 168 : sArgThrGluIleIleAspAsnGluIleValArgSerGlnAlaPheProIleTyrArg : 186 . !|||! !! ! |||.!.! :!!|||:!! ! !!.!!||| !|||..! nAlaLeuGluAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGlu 295127 : cgctTTGGAGAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAG : 295183 187 : GlyLeuLeuAspProArgThrSerProSerPheGluIleValGln : 201 !!!!:!!||| !! !:!!||||||!!!!:!||||||:!!::! LeuPheValAspAlaTyrSerSerProThrTyrGluIleIleArg 295184 : TTATTCGTAGACGCTTATTCCAGTCCTACCTACGAGATCATAAGA : 295230 vulgar: AmOr35 13 201 . KQ414889.1 294675 295230 + 182 M 28 84 G 0 3 M 30 90 G 1 0 M 52 156 G 3 0 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294676 295230 182 + . gene_id 22 ; sequence AmOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294676 295230 . + . KQ414889.1 exonerate:protein2genome:local exon 294676 295230 . + . insertions 3 ; deletions 4 KQ414889.1 exonerate:protein2genome:local similarity 294676 295230 182 + . alignment_id 22 ; Query AmOr35 ; Align 294676 14 84 ; Align 294763 42 90 ; Align 294853 73 156 ; Align 295009 128 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 307 -> 402 Target range: 254071 -> 254448 308 : GluTrpGluGlnSerGluThrIleGlyIleLeuThrTyrCysIleLeuLeuIleSerP : 327 |||||| !:!!|||!!:.!! ! !:!!!!!|||||| !:!! !|||:!!:!! GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaV 254072 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTG : 254129 328 : heIlePheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuSerGluGlu >>> : 345 !!:!! ||| |||::::::|||||||||.!!!!:! |||!!!|||:!! alValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 254130 : TTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt... : 254185 346 : > Target Intron 1 >>>> CysLysSerIleGlyLeuSerAlaTyrMetIleA : 356 92 bp ||| !!.!:!!||| ! !!.!||||||! !| ++CysLeuLysValGlyGluValValTyrMetThrA 254186 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 254308 357 : spTrpHisArgLeuProGlyLysLysAlaLeuSerLeuIleLeuIleSerAlaAlaSe : 375 |||||:!! !|||||| !!:!!:! !|||..!||||||||||||! !.!! !|| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSe 254309 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATC : 254365 376 : rAsnSerSerThrLysLeuThrAlaGlyLysLeuValGluLeuSerLeuSerSerPhe : 394 |||| ! !..!:!!:!!||||||||||||::: ...:::||||||! !!!!||| rAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPhe 254366 : GAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTC : 254422 395 : CysSerValLeuLysSerSerLeu : 402 !!..!||| !:!!!!!!:!||| GlyAspValSerGluThrAsnLeu 254423 : GGCGATGTAAGTGAAACTAATCTT : 254448 vulgar: AmOr35 307 402 . KQ414889.1 254071 254448 + 178 M 37 111 5 0 2 I 0 88 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254072 254448 178 + . gene_id 23 ; sequence AmOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254072 254182 . + . KQ414889.1 exonerate:protein2genome:local exon 254072 254182 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254183 254184 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254183 254274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254273 254274 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254275 254448 . + . KQ414889.1 exonerate:protein2genome:local exon 254275 254448 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254072 254448 178 + . alignment_id 23 ; Query AmOr35 ; Align 254072 308 111 ; Align 254275 345 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 339 -> 397 Target range: 214848 -> 215022 340 : IleLeuSerGluGluCysLysSerIleGlyLeuSerAlaTyrMetIleAspTrpHisA : 359 |||:!!! !:!!:!!||||||!.!:!!||| ! !:!!|||||||||!!:|||:!!| IleMetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrA 214849 : ATTATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACC : 214906 360 : rgLeuProGlyLysLysAlaLeuSerLeuIleLeuIleSerAlaAlaSerAsnSerSe : 378 |||||||||||!!.||| !|||!!!! !|||||||||! !||| !||||||||||| rgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSe 214907 : GATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATC : 214963 379 : rThrLysLeuThrAlaGlyLysLeuValGluLeuSerLeuSerSerPheCysSerVal : 397 |..!|||!!!|||||||||!!.:!!||||||||||||:!!|||!!!||| !!|||||| rValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214964 : CGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215020 vulgar: AmOr35 339 397 . KQ414889.1 214848 215022 + 177 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214849 215022 177 + . gene_id 24 ; sequence AmOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214849 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214849 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214849 215022 177 + . alignment_id 24 ; Query AmOr35 ; Align 214849 340 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 172 -> 252 Target range: 300186 -> 300426 173 : AspAsnGluIleValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProA : 192 !!:||| ! ! ! !!:! !! !|||!:!||| !||| ! !!!!!:!!||| !!! GluAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrG 300187 : GAGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACAC : 300244 193 : rgThrSerProSerPheGluIleValGlnLeuMetGlnCysLeuAlaGlyPheValIl : 211 :!|||||||||!!!!:!||||||||| .........|||.!!|||!.!.!.:!!!! lnThrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMe 300245 : AAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCAT : 300301 212 : eTyrSerValThrValGlySerCysSerLeuAlaAlaValPheValMetHisAlaCys : 230 :|||!:!||||||..!!.!:!!! !||||||||||||:!!||||||! ||| !||| tTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCys 300302 : GTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGT : 300358 231 : GlyGlnPheGlnIleLeuValThrLysLeuArgArgLeuIleAspGlyLeuLysGluA : 250 ||||||.!!||||||! !:!!.!!!:!|||..! !|||:!:!!: !! ! !||| GlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrGlyGluL 300359 : GGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGGGAGAGA : 300418 251 : spLysAsp : 252 ! ! ||| ysAspAsp 300419 : AGGACGAC : 300426 vulgar: AmOr35 172 252 . KQ414889.1 300186 300426 + 167 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300187 300426 167 + . gene_id 25 ; sequence AmOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 300187 300426 . + . KQ414889.1 exonerate:protein2genome:local exon 300187 300426 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300187 300426 167 + . alignment_id 25 ; Query AmOr35 ; Align 300187 173 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 343 -> 409 Target range: 264723 -> 265001 344 : GluCysLysSerIleGlyLeuSerAlaTyrMetIleAspTrpHisArgLeuProGlyL : 363 :!!||||||!.!:!!||| ! !!.!|||||| :!!|||:!! !|||||| !| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 364 : ysLysAlaLeuSerLeuIleLeuIleSerAlaAlaSerAsnSerSerThrLysLeuTh : 382 || ! !|||..!||||||||||||! ! ! !|||!:! ! ! !|||!!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 383 : rAlaGlyLysLeuValGluLeuSerLeuSerSerPheCysSer >>>> Target I : 397 ||||||||||:!!:!!.!.:!!|||:!!! !!!!||| !!..! 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 398 : ntron 1 >>>> ValLeuLysSerSerLeuAlaTyrLeuSerLeuLeuArg : 409 bp |||:!!|||||||||!!!.!!||||||!:!||||||||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArg 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGC : 265001 vulgar: AmOr35 343 409 . KQ414889.1 264723 265001 + 139 M 53 159 5 0 2 I 0 76 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265001 139 + . gene_id 26 ; sequence AmOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265001 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265001 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265001 139 + . alignment_id 26 ; Query AmOr35 ; Align 264724 344 159 ; Align 264963 397 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 307 -> 341 Target range: 291368 -> 291470 308 : GluTrpGluGlnSerGluThrIleGlyIleLeuThrTyrCysIleLeuLeuIleSerP : 327 |||||||||...|||!!::!!|||||||||||||||||| !! !||||||! !|||| GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 328 : heIlePheAsnIlePheIleLeuCysTyrIleGlyGluIleLeu : 341 ||! !|||||||||.!.|||!!!||||||:!!||||||:!!||| heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeu 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTT : 291470 vulgar: AmOr35 307 341 . KQ414889.1 291368 291470 + 128 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 291470 128 + . gene_id 27 ; sequence AmOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 291369 291470 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291470 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 291470 128 + . alignment_id 27 ; Query AmOr35 ; Align 291369 308 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 178 -> 253 Target range: 202685 -> 202910 179 : SerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheG : 198 ||| !.!!||| !!.!!! !! !:!!:!!||| !||| !|||||| ! !| SerValThrPheSerPheSerGlyPheIleIleAspValArgTyrSerProValAsnG 202686 : AGTGTGACGTTCTCCTTCTCAGGATTTATCATTGATGTTAGATACAGTCCTGTGAACG : 202743 199 : luIleValGlnLeuMetGlnCysLeuAlaGlyPheValIleTyrSerValThrValGl : 217 ||||| !! ! !!!:!:! !:!!|||! !.!!:!!|||:!!.!!||||||||||| luIlePhePheSerIleArgIleValAlaValIleLeuIleHisGlyValThrValGl 202744 : AGATCTTCTTCTCGATTCGAATCGTAGCTGTCATCCTAATTCACGGTGTCACTGTAGG : 202800 218 : ySerCysSerLeuAlaAlaValPheValMetHisAlaCysGlyGlnPheGlnIleLeu : 236 |:!!|||!!!|||.!!|||:!!|||!.!:!:|||! !|||||||||.!..!.:!!||| yAlaCysCysLeuThrAlaLeuPheAlaValHisAspCysGlyGlnMetAspValLeu 202801 : AGCTTGTTGCTTGACAGCGTTGTTTGCGGTTCACGATTGCGGCCAGATGGACGTTTTG : 202857 237 : ValThrLysLeuArgArgLeuIleAspGlyLeuLysGluAspLysAspMet : 253 :!!.!! !|||..!!.!|||!!:||||||! !..!!!: !.. ! ||| MetAlaTrpLeuGluHisLeuMetAspGlyArgSerAspMetSerLysMet 202858 : ATGGCCTGGCTGGAACATTTGATGGATGGTCGTTCGGATATGAGTAAAATG : 202910 vulgar: AmOr35 178 253 . KQ414889.1 202685 202910 + 127 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202686 202910 127 + . gene_id 28 ; sequence AmOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202686 202910 . + . KQ414889.1 exonerate:protein2genome:local exon 202686 202910 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202686 202910 127 + . alignment_id 28 ; Query AmOr35 ; Align 202686 179 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 302 -> 344 Target range: 214614 -> 214740 303 : TyrPheLeuLeuLysGluTrpGluGlnSerGluThrIleGlyIleLeuThrTyrCysI : 322 :::...:::||| ||||||.!...!!:!.!. !! ! !! !:!!|||||| : PheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValV 214615 : tttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGG : 214672 323 : leLeuLeuIleSerPheIlePheAsnIlePheIleLeuCysTyrIleGlyGluIleLe : 341 !:|||! !||||||... |||||||||||||||...|||||||||||||||:!!:! alLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuVa 214673 : TGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGGCGAGCTTGT : 214729 342 : uSerGluGlu : 344 !||||||:!! lSerGluGln 214730 : GTCTGAACAG : 214740 vulgar: AmOr35 302 344 . KQ414889.1 214614 214740 + 113 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214615 214740 113 + . gene_id 29 ; sequence AmOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214615 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214615 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214615 214740 113 + . alignment_id 29 ; Query AmOr35 ; Align 214615 303 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 351 -> 402 Target range: 244679 -> 244832 352 : AlaTyrMetIleAspTrpHisArgLeuProGlyLysLysAlaLeuSerLeuIleLeuI : 371 !.!||||||! !||||||:!! !|||||| !!:!!:! !|||..!|||||||||| ValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuI 244680 : GTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGA : 244737 372 : leSerAlaAlaSerAsnSerSerThrLysLeuThrAlaGlyLysLeuValGluLeuSe : 390 ||! ! ! !||||||! ! !..!:!!:!!||||||||||||:!!:!!.!.:!!|| leIleLysArgSerAsnMetValValGluIleThrAlaGlyLysValLeuHisMetSe 244738 : TCATTAAACGATCGAACATGGTCGTTGAAATCACCGCTGGAAAAGTATTACATATGTC : 244794 391 : rLeuSerSerPheCysSerValLeuLysSerSerLeu : 402 ||||! !!!!||| !!..!||| !:!!!!!!.!||| rLeuTyrThrPheGlyAspValSerGluThrLysLeu 244795 : GCTTTACACGTTCGGCGATGTAAGTGAAACTAAACTT : 244832 vulgar: AmOr35 351 402 . KQ414889.1 244679 244832 + 108 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244680 244832 108 + . gene_id 30 ; sequence AmOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244680 244832 . + . KQ414889.1 exonerate:protein2genome:local exon 244680 244832 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244680 244832 108 + . alignment_id 30 ; Query AmOr35 ; Align 244680 352 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 345 -> 405 Target range: 292395 -> 292575 346 : LysSerIleGlyLeuSerAlaTyrMetIleAspTrpHisArgLeuProGlyLysLysA : 365 !....!|||!.!! !:!!:!!||| ! !!!:|||:!!!.!|||||| !!::!|||| SerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgArgLysA 292396 : AGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGG : 292453 366 : laLeuSerLeuIleLeuIleSerAlaAlaSerAsnSerSerThrLysLeuThrAlaGl : 384 ||! !..!:!!:!!|||:!: !||| !!!!!!. ! !!! !|||||||||||||| laArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuThrAlaGl 292454 : CTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGG : 292510 385 : yLysLeuValGluLeuSerLeuSerSerPheCysSerValLeuLysSerSerLeuAla : 403 ||||:!! !!! |||||||||!:!!!!||| !!:!!|||! !:!!|||!.!|||!.! yLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSerLysLeuVal 292511 : CAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCAAAACTAGTC : 292567 404 : TyrLeu : 405 ! :!! LeuIle 292568 : TTGATA : 292575 vulgar: AmOr35 345 405 . KQ414889.1 292395 292575 + 108 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292396 292575 108 + . gene_id 31 ; sequence AmOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292396 292575 . + . KQ414889.1 exonerate:protein2genome:local exon 292396 292575 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292396 292575 108 + . alignment_id 31 ; Query AmOr35 ; Align 292396 346 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 207 -> 253 Target range: 202967 -> 203105 208 : GlyPheValIleTyrSerValThrValGlySerCysSerLeuAlaAlaValPheValM : 227 ..!.!!:!!|||:!!.!!||||||||||||:!!|||!!!|||.!!|||:!!|||!.!: AsnIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAlaV 202968 : AACATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTATTTGCGG : 203025 228 : etHisAlaCysGlyGlnPheGlnIleLeuValThrLysLeuArgArgLeuIleAspGl : 246 !:|||! !|||||||||.!..!.:!!|||:!!.!! !|||..!!.!|||!!:||||| alHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMetAspGl 203026 : TTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGATGG : 203082 247 : yLeuLysGluAspLysAspMet : 253 |! !..!!!: !.. ! ||| yArgSerAspMetSerLysMet 203083 : TCGTTCGGATATGAGCAAAATG : 203105 vulgar: AmOr35 207 253 . KQ414889.1 202967 203105 + 104 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202968 203105 104 + . gene_id 32 ; sequence AmOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202968 203105 . + . KQ414889.1 exonerate:protein2genome:local exon 202968 203105 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202968 203105 104 + . alignment_id 32 ; Query AmOr35 ; Align 202968 208 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 274 -> 306 Target range: 224140 -> 224236 275 : PheIleSerGlnIleGluGluLeuLeuAsnGluIleCysPheValGluPheIleGlyC : 294 |||:!!!!!!!.! !|||:!! !|||.!.:!!:!!! ||||||||||||:!!|||| PheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValGluPheLeuGlyC 224141 : TTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGGAATTTCTAGGCT : 224198 295 : ysThrLeuAsnIleCysPheLeuGlyTyrPheLeuLeu : 306 ||! !||||||||||||.!!|||||||||!:!:!!:!! ysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIle 224199 : GCATGTTGAACATATGTCTTCTCGGGTATTACGTTATT : 224236 vulgar: AmOr35 274 306 . KQ414889.1 224140 224236 + 104 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224141 224236 104 + . gene_id 33 ; sequence AmOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224141 224236 . + . KQ414889.1 exonerate:protein2genome:local exon 224141 224236 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224141 224236 104 + . alignment_id 33 ; Query AmOr35 ; Align 224141 275 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 801 Query range: 172 -> 412 Target range: 300180 -> 302169 173 : AsnLysAspAsnTyrThrIleArgProLeuProTyrIleGlyTyrAspProPhePheA : 192 !!.!:!!!:||||||||| !!:!|||||| !!||| !||||||||| !|||.!!| LysArgGluAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleA 300181 : AAAAGGGAGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCG : 300238 193 : spThrGlnSerSerProThrTyrGluIleValTyrCysIleHisCysPheThrAlaMe : 211 ||||||||!!!|||||||||||||||||||||::: ...|||||||||.!!||||| spThrGlnThrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMe 300239 : ATACACAAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGAT : 300295 212 : tIleMetTyrSerIleSerThrValAlaTyrSerLeuThrThrIlePheValThrHis : 230 ||||||||||!:!:!:!!!|||!.!||||||||||||.!!.!!||||||||||||||| tIleMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHis 300296 : GATCATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCAT : 300352 231 : IleCysGlyGlnIleGlnValGlnIleAlaArgLeuGlnAspLeuValGluSerLysG : 250 ||||||||||||||||||:!!|||!!:|||||||||:!!|||||||||||| !:! IleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGlu---ArgT 300353 : ATCTGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAG---AGGA : 300409 251 : luLysArgLysTyrLysAspCysAspProPheAlaLeuIleValHisAspHisValGl : 269 ! !..!||| !! ! ! ! !||||||!!.!.!:!!||||||!..|||||||||:! hrGlyGluLysAspAspGlyProAspProLeuValValIleValArgAspHisValLy 300410 : CGGGAGAGAAGGACGACGGTCCTGATCCTTTGGTCGTTATCGTTCGAGATCACGTGAA : 300466 270 : uValLeu{Ar} >>>> Target Intron 1 >>>> {g}PheSerAsnAsnIle : 277 !||||||{||} 140 bp {|}|||:!!!!.|||:!! sValLeu{Ar}++ ++{g}PheAlaLysAsnVal 300467 : GGTTTTA{AG}gt.........................ag{A}TTTGCAAAGAACGTT : 300630 278 : GluGluAlaLeuArgGluIleCysPheThrGluIleIleGluCysThrIleAspMetC : 297 ||||||.!!||||||!!:.!!|||!!...!||||||.!!|||! !|||:!: !:!!| GluGluThrLeuArgAspPheCysLeuValGluIlePheGluSerThrLeuIleLeuC 300631 : GAGGAAACTTTGCGTGACTTCTGCTTAGTGGAAATCTTCGAGTCCACGCTGATTTTGT : 300690 298 : ysMetLeuGluTyrTyrCysIleMet >>>> Target Intron 2 >>>> Glu : 306 ||:!!|||||||||||||||:!::!! 970 bp ||| ysLeuLeuGluTyrTyrCysLeuVal++ ++Glu 300691 : GTTTGCTCGAATACTACTGTTTGGTGgt.........................agGAA : 301687 307 : TrpSerValGlyAspThrIleThrLeuLeuThrPhePheThrLeuLeuIleSerPheT : 326 |||..! !.!!|||||||||.!!:!!|||||||||||||||||||||! ||||||| TrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheT 301688 : TGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCA : 301747 327 : hrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGln >>>> T : 343 |||||||||||||||||||||||||||||||||||||||||:!!|||||| hrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301748 : CTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt...... : 301800 344 : arget Intron 3 >>>> CysSerGlnIleGlyThrValSerTyrGluIleAspT : 355 80 bp |||||||||||||||:!!!.!|||||||||||||||| ++CysSerGlnIleGlySerAlaSerTyrGluIleAspT 301801 : ...................agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATT : 301914 356 : rpTyrLysLeuSerProLysGluAlaTyrAspLeuIleLeuLeuIleSerIleSerGl : 374 |||||!!.||| !! !!|||..!|||||||||||||||||||||! ! !|||||||| rpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGl 301915 : GGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCA : 301971 375 : nHisProProLysLeuThrAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSer : 393 |:!!||||||||||||||||||||||||||||||!!:||||||||||||||||||||| nTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSer 301972 : GTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGC : 302028 394 : Thr >>>> Target Intron 4 >>>> ValAlaLysThrSerValValTyrLe : 403 :!! 82 bp |||!.!|||||||||||||||||||| Ser++ ++ValValLysThrSerValValTyrLe 302029 : TCTgt.........................agGTGGTGAAAACATCGGTGGTGTACTT : 302140 404 : uAsnLeuLeuArgThrValThrAspTrp : 412 ||||||||||||||||||||||:!!||| uAsnLeuLeuArgThrValThrAsnTrp 302141 : GAATTTACTGCGAACAGTTACAAACtgg : 302169 vulgar: AmOr53 172 412 . KQ414889.1 300180 302169 + 801 M 75 225 G 1 0 M 23 69 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 33 99 5 0 2 I 0 966 3 0 2 M 37 111 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300181 302169 801 + . gene_id 1 ; sequence AmOr53 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300181 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300181 300476 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 300616 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300615 300616 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300617 300716 . + . KQ414889.1 exonerate:protein2genome:local exon 300617 300716 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300717 300718 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300717 301686 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301685 301686 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 3 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302169 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302169 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300181 302169 801 + . alignment_id 1 ; Query AmOr53 ; Align 300181 173 225 ; Align 300406 249 69 ; Align 300618 273 99 ; Align 301687 306 111 ; Align 301878 343 156 ; Align 302116 395 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 721 Query range: 13 -> 272 Target range: 289705 -> 290482 14 : LysAsnSerHisTyrLysSerAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuL : 33 ..!|||..!!.!|||:!!!!!||||||!.!||||||!!!:!!:!:|||!!.|||:!!| SerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleL 289706 : TCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCT : 289763 34 : euLysProIleGlyValTrpProLeuIleTyrAsnGlnThrSerArgPheGluGlnLe : 52 ||||||||||||||:!!!::|||!!!:!!!:!!:!!::.!!|||||| !|||!:! euLysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgTh 289764 : TGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAAC : 289820 53 : uIleSerIleIleLeuMetGlyThrCysPheSerSerLeuLeuPheIleIleLeuPro : 71 ! |||:!::!:|||!!: !..!|||! !|||! !|||! !|||||||||:!!||| rAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValPro 289821 : GGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCG : 289877 72 : SerGlyHisHisIleLeuPheValGluLysAsnLeuHisMetLysValLysAlaPheG : 91 ! !.!!||||||:!!|||||| !!!:!!.:!!:!!:!!! ! |||||| !.!!| PheSerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuG 289878 : TTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCG : 289937 92 : lyProAlaGlyPheCysLeuSerSerThrIleLysTyrCysTyrLeuGlyLeuLysGl : 110 ||||| ! !|||||||||!!!!!! !.!!||||||||||||!!!.!!:!!||||| lyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGl 289938 : GACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGG : 289994 111 : ySerSerPheGluArgCysIleGluHisMetArgLysAspTrpMetMetValGlnAsp : 129 ||||:!!.!!! ||||||:!::!!|||!!:..!!:!||||||! !|||:!!!::||| ySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAsp 289995 : TTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGAC : 290051 130 : ProAsnHisArgThrIleMetLeuLysTyrAlaThrIleSerArgLysLeuIleThrM : 149 !:!!||||||..!|||||||||!:!|||!.!|||!!:||||||!!.||||||! !: GluAspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysL 290052 : GAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAAC : 290111 150 : etCysAlaValPheLeuTyrThrGlyGlyMetSerTyrHisThrIleMetGlnPheLe : 168 !!||||||:!!|||||||||! !||||||:!!||||||:!!|||:!!!!:! !!!.!! euCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPh 290112 : TGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTT : 290168 169 : uSerLysGlyLysAsnLysAspAsnTyrThrIleArgProLeuProTyrIleGlyTyr : 187 !|||||| !!.. !!.! !||| ||||||||||||||| !!||| !|||||| eSerLysLysSerValAsnGlyAsnValThrIleArgProLeuThrTyrProGlyTyr 290169 : CTCGAAGAAGAGCGTGAACGGTAACGTGACTATCAGACCTCTAACTTATCCCGGTTAC : 290225 188 : AspProPhePheAspThrGlnSerSerProThrTyrGluIleValTyrCysIleHisC : 207 !!: !|||||||||..!|||!.!||||||.!!||||||||||||!:!|||!!:|||| GluGluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetHisC 290226 : GAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACT : 290285 208 : ysPheThrAlaMetIleMetTyrSerIleSerThrValAlaTyrSerLeuThrThrIl : 226 || !! !!.!||||||! ! !:!|||!!!! !!.!|||||||||||||||||||| ysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIl 290286 : GTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGAT : 290342 227 : ePheValThrHisIleCysGlyGlnIleGlnValGlnIleAlaArgLeuGlnAspLeu : 245 ||||!.!||||||! !||||||||||||:!!:!!|||! .!!||||||:!!|||||| ePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAspLeu 290343 : CTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTG : 290399 246 : ValGluSerLysGluLysArgLysTyrLysAspCysAspProPheAlaLeuIleValH : 265 ..!:!!!!! ! ! ! !:!! ! !! !!|||! !!!.|||:!!:!!||| ThrLysArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValValValS 290400 : ACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTGTGA : 290459 266 : isAspHisValGluValLeuArg : 272 !! !|||||||||:!!|||!:! erGlyHisValGluIleLeuLys 290460 : GCGGTCACGTGGAGATCTTGAAG : 290482 vulgar: AmOr53 13 272 . KQ414889.1 289705 290482 + 721 M 259 777 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289706 290482 721 + . gene_id 2 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289706 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289706 290482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289706 290482 721 + . alignment_id 2 ; Query AmOr53 ; Align 289706 14 777 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 590 Query range: 14 -> 410 Target range: 284496 -> 287338 15 : AsnSerHisTyrLysSerAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuL : 34 :!!||| !:: ! !!!||| |||!:!:!!|||||| !!::|||!!!|||| AspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuL 284497 : GATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCA : 284554 35 : ysProIleGlyValTrpProLeuIleTyrAsnGlnThrSerArgPheGluGlnLeuIl : 53 |||||||||||||||||||||||! ! ! ! !|||!!! ! :!! ! ysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSe 284555 : AACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTC : 284611 54 : eSerIleIleLeuMetGlyThrCysPheSerSerLeuLeuPheIleIleLeuProSer : 72 ! !:!!:!! !:!: !!:!|||||| !! ! !!!!.!!:!::!!! ! !:!! rValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAla 284612 : CGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCT : 284668 73 : GlyHisHisIleLeuPheValGluLysAsnLeuHisMetLysValLysAlaPheGlyP : 92 ! ! :!:||| ! ! :!!||| !!! !|||:!!||| !.!!|||| LeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyP 284669 : CTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTC : 284728 93 : roAlaGlyPheCysLeuSerSerThrIleLysTyrCysTyrLeuGlyLeuLysGlySe : 111 || !.!!||||||:!!! !:!!.!!|||||||||! ! !||| !! !:::|||.! roLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGl 284729 : CTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGG : 284785 112 : rSerPheGluArgCysIleGluHisMetArgLysAspTrpMetMetVal<-><-><-> : 128 !!.!.!!! !:!|||:!::!! !!!!:||| !|||||| :!:..! yLysIleGlyGlnCysValLysAspIleArgAlaAspTrpSerLeuThrLeuSerHis 284786 : CAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCAT : 284842 129 : GlnAspProAsnHisArgThrIleMetLeuLysTyrAlaThrIleSerArgLysLeuI : 147 ...... ......||| |||||| ! ! !|||! !|||.!!|||...||| SerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuA 284843 : AGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGG : 284902 148 : leThrMetCysAlaValPheLeuTyrThrGlyGlyMetSerTyrHisThrIleMetGl : 166 ! !.!.||||||! !|||:!!|||:!!||||||.!.! !||| !|||:!:|||! laIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetPr 284903 : CGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCC : 284959 167 : nPheLeuSer<->LysGlyLysAsnLysAspAsnTyrThrIleArgProLeuProTyr : 184 !!!.! !!!! ::: !:!!! !! |||||| ! |||:!:||| !!! ! !!!:! oLeuCysThrValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPhe 284960 : GTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTC : 285016 185 : IleGlyTyrAspProPhePheAspThrGlnSerSerProThrTyrGluIleValTyrC : 204 !||| ! !.!!.!!||| !!!::!!!||||||:!!!:!||||||||| ! ! ProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnP 285017 : CCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAAT : 285076 205 : ysIleHisCysPheThrAlaMetIleMetTyrSerIleSerThrValAlaTyrSerLe : 223 !!!:!!.|||!!..!!|||.!.:!!!!:||||||:!!!!!..!! !|||! !||||| heMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLe 285077 : TCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTT : 285133 224 : uThrThrIlePheValThrHisIleCysGlyGlnIleGlnValGlnIleAlaArgLeu : 242 |.!!.!!:!:||||||! !|||:!!|||||||||.!!::!:!!! :!:.!!!:!||| uAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeu 285134 : GGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTG : 285190 243 : GlnAspLeuValGluSerLysGlu{L} >>>> Target Intron 1 >>>> {y : 251 .!. ! ||||||!!:.!! !:!!{ } 1494 bp {! AspLysLeuValAspGlyValLys{A}+- +-{s 285191 : GATAAGCTCGTCGACGGAGTGAAA{G}gg.........................aa{A : 286712 252 : s}ArgLysTyrLysAspCysAspProPheAlaLeuIleValHisAspHisValGluVa : 270 }||| ! ! ! ! :!! !||| !! ! !! ! ||||||||| p}ArgGlyAlaProLysArgAsnMetPheArgArgGlyAspTrpLeuHisValGluHi 286713 : T}CGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACA : 286768 271 : lLeuArgPheSerAsnAsnIleGluGluAlaLeuArg<->GluIleCysPheThrGlu : 288 !:!!! !|||.!!! .!! !!:!.! !||| !!::!:|||!:! !.!. sMetLeuPheGlyIleLeuPheThrAspGlyAsnArgAspAspLeuCysTyrTyrHis 286769 : TATGCTTTTTGGGATATTATTTACTGACGGTAACAGAGACGACTTGTGTTATTACCAT : 286825 289 : IleIleGluCysThrIleAspMetCysMetLeuGluTyrTyrCysIleMetGluTrpS : 308 ! !:!! !...! !|||! .!. !|||! !..!! ! !.!! !||||||. ThrValMetAlaIleIleAlaPheValMetTyrSerLeuSerValPhe***GluTrpG 286826 : ACTGTAATGGCAATAATTGCATTCGTCATGTACTCGTTGTCAGTTTTCTAGGAATGGG : 286885 309 : erValGlyAspThrIleThrLeuLeuThrPhePheThrLeuLeuIleSerPheThrPh : 327 .! !.!!!!:|||||| ! !:!!|||!:!! !|||||||||:!!||||||||||| luGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerPheThrPh 286886 : AGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCACGTT : 286942 328 : eAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGln >>>> Targe : 343 ||||:!!||||||.!!|||||||||||||||||||||:!!|||||| eAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286943 : CAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt.......... : 286992 344 : t Intron 2 >>>> CysSerGlnIleGlyThrValSerTyrGluIleAspTrpTy : 356 74 bp |||! !:!!:!!||| ! !!!!||| !||||||||||| ++CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTy 286993 : ...............agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTA : 287103 357 : rLysLeuSerProLysGluAlaTyrAspLeuIleLeuLeuIleSerIleSerGlnHis : 375 |:::||| !! !||| !||| ! ! !|||||||||:!!.!!:!!:!:|||.!. ! rArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSer 287104 : TCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCT : 287160 376 : ProProLysLeuThrAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSerThr : 395 !! !||||||||||||||||||||||||!!:|||||||||!:!!:!|||!!!!:! SerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSer+ 287161 : TCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCg : 287220 396 : >>>> Target Intron 3 >>>> ValAlaLysThrSerValValTyrLeuAsn : 404 71 bp ||| !|||:!!:!! !!!.!||||||!:! + ++ValLeuLysSerAlaPheAlaTyrLeuSer 287221 : t.........................agGTGTTGAAATCGGCATTCGCATATCTGAGC : 287318 405 : LeuLeuArgThrValThr : 410 ||||||||||||:!!||| LeuLeuArgThrLeuThr 287319 : TTATTACGTACGCTAACC : 287338 vulgar: AmOr53 14 410 . KQ414889.1 284496 287338 + 590 M 113 339 G 0 9 M 42 126 G 0 3 M 81 243 S 0 1 5 0 2 I 0 1490 3 0 2 S 1 2 M 31 93 G 0 3 M 60 180 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284497 287338 590 + . gene_id 3 ; sequence AmOr53 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284497 285217 . + . KQ414889.1 exonerate:protein2genome:local exon 284497 285217 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 285218 285219 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local intron 285218 286711 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286710 286711 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 286712 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286712 286989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287220 287221 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 287220 287290 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287289 287290 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 287291 287338 . + . KQ414889.1 exonerate:protein2genome:local exon 287291 287338 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284497 287338 590 + . alignment_id 3 ; Query AmOr53 ; Align 284497 15 339 ; Align 284845 128 126 ; Align 284974 170 243 ; Align 286714 252 93 ; Align 286810 283 180 ; Align 287064 343 156 ; Align 287291 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 585 Query range: 14 -> 410 Target range: 278549 -> 280551 15 : AsnSerHisTyrLysSerAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuL : 34 :!!||| !::!!.!!!||| |||!:!:!!|||||| !!::|||!!!|||| AspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuL 278550 : GATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCA : 278607 35 : ysProIleGlyValTrpProLeuIleTyrAsnGlnThrSerArgPheGluGlnLeuIl : 53 |||||||||||||||||||||||! ! ! ! !|||!!! ! :!! ! ysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSe 278608 : AACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTC : 278664 54 : eSerIleIleLeuMetGlyThrCysPheSerSerLeuLeuPheIleIleLeuProSer : 72 ! !:!!:!! !:!: !!:!|||||| !! ! !!!!.!!:!::!!! ! !:!! rValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAla 278665 : CGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCT : 278721 73 : GlyHisHisIleLeuPheValGluLysAsnLeuHisMetLysValLysAlaPheGlyP : 92 ! ! :!:||| ! ! :!!||| !!! !|||:!!||| !.!!|||| LeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyP 278722 : CTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTC : 278781 93 : roAlaGlyPheCysLeuSerSerThrIleLysTyrCysTyrLeuGlyLeuLysGlySe : 111 || !.!!|||||| !! !:!!||||||||||||! ! !||| !! !:::|||.! roLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGl 278782 : CTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGG : 278838 112 : rSerPheGluArgCysIleGluHisMetArgLysAspTrpMetMetVal<-><-><-> : 128 !!.!.!!! !:!|||:!:.!. !!!!:|||! !|||||| :!:..! yLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyr 278839 : CAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTAT : 278895 129 : GlnAspProAsnHisArgThrIleMetLeuLysTyrAlaThrIleSerArgLysLeuI : 147 !::... ......||| |||||| ! ! !|||! !|||.!!|||...||| ArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuA 278896 : CGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGG : 278955 148 : leThrMetCysAlaValPheLeuTyrThrGlyGlyMetSerTyrHisThrIleMetGl : 166 ! !.!. !!|||! !|||:!!|||:!!||||||:!:! !||| !.!!:!:|||! laIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetPr 278956 : CGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCC : 279012 167 : n<->PheLeuSerLysGlyLysAsnLysAspAsnTyrThrIleArgProLeuProTyr : 184 ! ||| ! !::: !:!!! !! |||||| ! |||:!:||| !!! ! !!!:! oLeuPheAlaValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPhe 279013 : GTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTC : 279069 185 : IleGlyTyrAspProPhePheAspThrGlnSerSerProThrTyrGluIleValTyrC : 204 !||| ! !.!!.!!||| !!!::!!!||||||:!!!:!||||||||| ! ! ProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnP 279070 : CCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAAT : 279129 205 : ysIleHisCysPheThrAlaMetIleMetTyrSerIleSerThrValAlaTyrSerLe : 223 !!!:!!.|||!!..!!|||.!.:!!:!:||||||:!!!!!..!! !|||! !||||| heMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLe 279130 : TCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTT : 279186 224 : uThrThrIlePheValThrHisIleCysGlyGlnIleGlnValGlnIleAlaArgLeu : 242 |! !.!!:!:||||||! !|||:!!|||||||||.!!::!:!!! :!:.!!!:!||| uIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeu 279187 : GATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTG : 279243 243 : GlnAspLeuValGluSerLysGlu{L} >>>> Target Intron 1 >>>> {y : 251 .!. ! |||:!!!!:.!! !:!!{ } 654 bp {! AspLysLeuIleAspGlyValLys{A}+- +-{s 279244 : GATAAGCTCATCGACGGAGTGAAA{G}gg.........................aa{A : 279925 252 : s}ArgLysTyrLysAspCysAspProPheAlaLeuIleValHisAspHisValGluVa : 270 }||| ! ! !!: ! :!! !||| !! ! !! ! ||||||||| p}ArgGlyAlaProGluArgAsnMetPheArgArgGlyAspTrpLeuHisValGluHi 279926 : T}CGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACA : 279981 271 : lLeuArgPheSerAsnAsnIleGluGluAlaLeuArg<->GluIleCysPheThrGlu : 288 !:!!! !|||..!! .!! .!.!.! !||| !!::!!|||!:! !.!. sMetLeuPheAspIleLeuPheThrHisGlyAsnArgAspAspLeuCysTyrPheHis 279982 : TATGCTTTTTGACATATTATTTACTCACGGTAACAGAGACGACTTATGTTATTTCCAT : 280038 289 : IleIleGluCysThrIleAspMetCysMetLeuGluTyrTyrCysIleMetGluTrpS : 308 |||:!! !...! !|||! .!. !|||! !..!! ! !.!! !||||||. IleValMetAlaLysIleAlaPheValMetTyrSerLeuSerValPhe***GluTrpG 280039 : ATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGTTGTCAGTTTTCTAGGAATGGG : 280098 309 : erValGlyAspThrIleThrLeuLeuThrPhePheThrLeuLeuIleSerPheThrPh : 327 .! !..!|||.!!||| ! !!!!|||!:!!!.! !!!!|||||||||!!.||||| luGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerLeuThrPh 280099 : AGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTTTAACGTT : 280155 328 : eAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGln >>>> Targe : 343 ||||:!!||||||.!!|||||||||||||||||||||:!!|||||| eAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 280156 : CAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt.......... : 280205 344 : t Intron 2 >>>> CysSerGlnIleGlyThrValSerTyrGluIleAspTrpTy : 356 74 bp |||! !:!!:!!|||..! !!!!||| !||||||||||| ++CysLeuLysValGlyValSerThrTyrMetIleAspTrpTy 280206 : ...............agTGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTA : 280316 357 : rLysLeuSerProLysGluAlaTyrAspLeuIleLeuLeuIleSerIleSerGlnHis : 375 |:::||| !! !|||:!!||| ! ! !|||||||||:!!.!!:!!:!:|||.!. ! rArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSer 280317 : TCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCT : 280373 376 : ProProLysLeuThrAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSerThr : 395 !! !||||||||||||||||||||||||!!:|||||||||!:!!:!|||!!!!:! SerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSer+ 280374 : TCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCg : 280433 396 : >>>> Target Intron 3 >>>> ValAlaLysThrSerValValTyrLeuAsn : 404 71 bp ||| !||||||:!! !!!.!||||||!:! + ++ValLeuLysThrAlaPheAlaTyrLeuSer 280434 : t.........................agGTGTTAAAAACGGCATTCGCATATCTGAGC : 280531 405 : LeuLeuArgThrValThr : 410 ||||||||||||:!!||| LeuLeuArgThrLeuThr 280532 : TTATTACGTACGCTTACC : 280551 vulgar: AmOr53 14 410 . KQ414889.1 278549 280551 + 585 M 113 339 G 0 9 M 39 117 G 0 3 M 84 252 S 0 1 5 0 2 I 0 650 3 0 2 S 1 2 M 31 93 G 0 3 M 60 180 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278550 280551 585 + . gene_id 4 ; sequence AmOr53 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278550 279270 . + . KQ414889.1 exonerate:protein2genome:local exon 278550 279270 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 279271 279272 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local intron 279271 279924 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279923 279924 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 279925 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 279925 280202 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280551 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278550 280551 585 + . alignment_id 4 ; Query AmOr53 ; Align 278550 15 339 ; Align 278898 128 117 ; Align 279018 167 252 ; Align 279927 252 93 ; Align 280023 283 180 ; Align 280277 343 156 ; Align 280504 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 473 Query range: 0 -> 123 Target range: 299620 -> 299989 1 : MetHisAspArgSerHisAspAsnIleAsnGlyGlnLeuLysAsnSerHisTyrLysS : 20 |||:!!||||||||| !..!!:!:!!:!!|||||||||!:!|||! !||||||:!!! MetTyrAspArgSerCysSerSerValAspGlyGlnLeuArgAsnTyrHisTyrGlnA 299621 : ATGTACGATCGATCCTGTAGCAGTGTTGACGGCCAATTGAGGAATTACCATTACCAAA : 299678 21 : erAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTr : 39 :!|||||||||||||||||||||||||||||||||||||||||||||||||||||||| snAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTr 299679 : ATGACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATG : 299735 40 : pProLeuIleTyrAsnGlnThrSerArgPheGluGlnLeuIleSerIleIleLeuMet : 58 |! !|||:!! !!.!.!:::!!|||!:!.!.|||!!.|||:!!||||||:!!|||||| pArgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMet 299736 : GCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATG : 299792 59 : GlyThrCysPheSerSerLeuLeuPheIleIleLeuProSerGlyHisHisIleLeuP : 78 !! !|||||||||||||||!!!||||||:!!|||||||||||||||:!!|||!!!| ThrIleCysPheSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePheP 299793 : ACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCT : 299852 79 : heValGluLysAsnLeuHisMetLysValLysAlaPheGlyProAlaGlyPheCysLe : 97 ||!.!||||||!:!:!!|||:!:|||||||||!.!|||||||||!.!||||||||||| heAlaGluLysSerIleHisValLysValLysValPheGlyProValGlyPheCysLe 299853 : TCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCT : 299909 98 : uSerSerThrIleLysTyrCysTyrLeuGlyLeuLysGlySerSerPheGluArgCys : 116 |||||||! !:!!||||||||||||||| !!|||!!.|||.!!:!!|||||||||||| uSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCys 299910 : CTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGC : 299966 117 : IleGluHisMetArgLysAsp : 123 |||:!!|||:!:..!!:!||| IleGlnHisValGluArgAsp 299967 : ATCCAACACGTCGAGAGAGAC : 299989 vulgar: AmOr53 0 123 . KQ414889.1 299620 299989 + 473 M 123 369 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299621 299989 473 + . gene_id 5 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299621 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299621 299989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299621 299989 473 + . alignment_id 5 ; Query AmOr53 ; Align 299621 1 369 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 457 Query range: 14 -> 410 Target range: 259745 -> 262201 15 : AsnSerHisTyrLysSerAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuL : 34 .!.!!! !!:!! ||| !!! ! !!|||!:!||||||.!. !!:!|||!!!|||| GluThrSerPheThrSerHisSerAspTyrSerLeuGlnPheAsnArgTrpPheLeuL 259746 : GAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCCAATTTAATCGATGGTTCCTGA : 259803 35 : ysProIleGlyValTrpProLeuIleTyrAsnGlnThrSerArgPheGluGlnLeuIl : 53 |||||||||||!.!|||||| !! ::!...|||!!!|||.!!|||:!!:!!|| ysProIleGlyAlaTrpPro---ProSerSerSerThrThrArgLeuGluLysIleIl 259804 : AACCGATAGGCGCTTGGCCA---CCTTCATCCTCCACGACCAGACTCGAGAAGATCAT : 259857 54 : eSerIleIleLeuMetGlyThrCysPheSerSerLeuLeuPheIleIleLeuProSer : 72 ||||:!!||||||!!: !! !|||!:!|||!!!:!!||| !!! !:!::!!|||!!! eSerValIleLeuIlePheIleCysTyrSerThrIleLeuValThrLeuIleProCys 259858 : CTCTGTTATCCTGATCTTTATCTGCTACAGTACCATACTGGTCACCCTGATCCCGTGC : 259914 73 : GlyHisHisIleLeuPheValGluLysAsnLeuHisMetLysValLysAlaPheGlyP : 92 ! !! !|||!!:|||.!!! !:!!:!!!:!|||:!!||||||..!|||!.!.!!|||| ValLeuHisMetLeuLeuGluLysGluSerLeuTyrMetLysThrLysValLeuGlyP 259915 : GTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGAAGGTGCTCGGTC : 259974 93 : roAlaGlyPheCysLeuSerSerThrIleLysTyrCysTyrLeuGlyLeuLysGlySe : 111 || ! ! !!! !!! !.!! !|||!!.||| ||| !|||!:!|||!! roLeuThrHisTrpPheValGlyCysIleAsnTyrThrThrLeuLeuLeuArgGlyAr 259975 : CTCTTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTGTTGAGAGGCAG : 260031 112 : rSerPheGluArgCysIleGluHisMetArgLysAspTrpMetMetValGlnAspPro : 130 !..!.!. !!!|||:!:||||||:!!..!!!.||||||! !!::!! ! ! gAspIleLeuSerCysValGluHisValGluAsnAspTrpArgIleIleThrArgGlu 260032 : AGACATACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGAATTATAACGAGGGAG : 260088 131 : AsnHisArgThrIleMetLeuLysTyrAlaThrIleSerArgLysLeuIleThrMetC : 150 !!. !!!:!!.!:!:||||||!:!||||||! !.!!.!!||| ! :!! !.!! | LysAspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgTyrValAlaAlaSerC 260089 : AAGGATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGATACGTCGCTGCCTCTT : 260148 151 : ysAlaValPheLeuTyrThrGlyGlyMetSerTyrHisThrIleMetGlnPheLeuSe : 169 |||||!.!|||:!! ! !|||! !:!!!!!!:! ! !:!!! ! !!!. !!! ysAlaAlaPheValGlnGlyGlyValLeuCysPheCysLeuValThrValLeuSerTh 260149 : GCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTCACGGTGTTGAGTAC : 260205 170 : rLysGlyLysAsnLysAspAsnTyrThr<-><->IleArgProLeuProTyrIleGly : 186 !:!!! !! !.!. !! ||| ! ||| :!!!.!! !||||||! ! ! ! rGluValIleGlnValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaVal 260206 : AGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTGCCGTGCGCGGTG : 260262 187 : TyrAspProPhePheAspThrGlnSerSerProThrTyrGluIleValTyrCysIleH : 206 ||| ! !.!..!.:!!..!.!...!||||||! ! !!||||||||| ! !:!:! TyrLysGluLeuIleAsnValAsnAspSerProMetAsnGluIleValLeuValValG 260263 : TACAAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGATTGTTCTCGTCGTGC : 260322 207 : isCysPheThrAlaMetIleMetTyrSerIleSerThrValAlaTyrSerLeuThrTh : 225 !.! ! !!:!!!.!.!.|||:!! !!|||! !!!!..!! ! !!:!||||||.!!.! lnPheValSerGlyPheIleValAsnSerSerThrValGlyIlePheSerLeuAlaAl 260323 : AATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTTCAGTCTCGCGGC : 260379 226 : rIlePheValThrHisIleCysGlyGlnIleGlnValGlnIleAlaArgLeuGlnAsp : 244 !:!!.!...!.!!||| |||||||||:!:.!.|||! !!:! ! !!:!! !!!: aValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMetGluTrpIleThrGlu 260380 : TGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAATGGATCACGGAG : 260436 245 : LeuVal<->GluSerLysGluLysArgLysTyrLysAspCysAspProPheAlaLeuI : 263 !!!||| ||||||!:!.!.!:!!:!||| ! !! ! ! !.!!!.!:!!| PheValAspGluSerArgAsnArgLysLysLysAlaProPheLysGluIleGlyValI 260437 : TTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTCCTTTCAAGGAGATCGGAGTGA : 260496 264 : leValHisAspHisValGluValLeuArgPheSerAsnAsnIleGluGluAlaLeuAr : 282 |||||.!. !!|||:!!..!!.!|||! !! ..! ! ! !:!!|| leValGluHisHisLeuArgAlaLeuThr***AspLeuPheAspIleThrPheValAr 260497 : TTGTCGAACATCATTTGAGAGCACTCACGTAAGATTTGTTTGATATTACTTTTGTACG : 260553 283 : gGluIleCysPheThrGluIleIleGluCysThrIleAspMetCysMet{Le} >>> : 299 | !!! !|||! ! ! :!!! !! !|||||| :::{:!} g***ArgIlePheIleIleThrValGlySerThrIleIle***LysLeu{Il}++ 260554 : ATAAAGGATTTTTATAATTACGGTAGGATCTactataatttgaaaatta{at}gt... : 260608 300 : > Target Intron 1 >>>> {u}GluTyrTyrCysIleMetGluTrpSerValG : 310 1109 bp {!} :::::: :::...||||||:!!! ! -+{e}TyrPhePheLeuLeuGlnGluTrpAlaGluG 260609 : ......................tg{a}tatttctttcttttgcagGAATGGGCTGAGC : 261746 311 : lyAspThrIleThrLeuLeuThrPhePheThrLeuLeuIleSerPheThrPheAsnIl : 329 !|||! ! !!.!|||! !|||!:!|||! !:!!||||||:!!.!! !||||||:! lnAspIleGlnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnVa 261747 : AAGATATACAAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGT : 261803 330 : ePheIlePheCysTyrIleGlyGluIleLeuThrGluGln >>>> Target Intr : 343 !||||||.!!|||||||||||||||||||||||||||||| 81 bp lPheIleIleCysTyrIleGlyGluIleLeuThrGluGln++ 261804 : ATTTATAATCTGTTACATCGGTGAAATACTAACGGAACAGgt................ : 261847 344 : on 2 >>>> CysSerGlnIleGlyThrValSerTyrGluIleAspTrpTyrLysLe : 358 ||||||:!!:!!||| !||| !||| !! !:!!|||||| ! || ++CysSerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLe 261848 : .........agTGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTT : 261971 359 : uSerProLysGluAlaTyrAspLeuIleLeuLeuIleSerIleSerGlnHisProPro : 377 | !! !|||... ! !||||||||||||:!!|||:!! !!:!!! ||| ! uProAspLysSerIleLeuAspLeuIleLeuIleIleAla---ArgLysProProGly 261972 : ACCTGATAAAAGTATCCTTGATTTGATTTTGATCATTGCA---CGAAAACCGCCGGGA : 262025 378 : LysLeuThrAlaGlyLysIleIleGluLeuSer{Le} >>>> Target Intron : 389 !!.! ! ! ! !!::!.!!! !...! !:!!{:!} 75 bp Asn***PheLysCysArgPheThrArgSerAla{Il}++ 262026 : AATTAGTTCAAATGTCGGTTTACACGTTCGGCG{AT}gt................... : 262065 390 : 3 >>>> {u}AsnThrPheSerThrValAlaLysThrSerValValTyrLeuAsnLe : 405 {!} !.!.! ! !|||!.!||||||:!! !!!.!||||||||||| ++{e}ProLeuIlePheGlnValValLysThrAlaPheAlaTyrLeuAsnLe 262066 : ......ag{T}CCGTTGATATTCCAGGTGGTTAAAACTGCTTTCGCGTATCTGAATCT : 262184 406 : uLeuArgThrValThr : 410 ||||||| !:!!||| uLeuArgGlnMetThr 262185 : GTTGCGTCAAATGACG : 262201 vulgar: AmOr53 14 410 . KQ414889.1 259745 262201 + 457 M 26 78 G 1 0 M 137 411 G 0 6 M 68 204 G 0 3 M 52 156 S 0 2 5 0 2 I 0 1105 3 0 2 S 1 1 M 43 129 5 0 2 I 0 77 3 0 2 M 29 87 G 1 0 M 16 48 S 0 2 5 0 2 I 0 71 3 0 2 S 1 1 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259746 262201 457 + . gene_id 6 ; sequence AmOr53 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259746 260605 . + . KQ414889.1 exonerate:protein2genome:local exon 259746 260605 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 260606 260607 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 260606 261714 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261713 261714 . + . intron_id 0 ; splice_site "tg" KQ414889.1 exonerate:protein2genome:local cds 261715 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261715 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262062 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262062 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 262063 262064 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 262063 262137 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 262136 262137 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 262138 262201 . + . KQ414889.1 exonerate:protein2genome:local exon 262138 262201 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259746 262201 457 + . alignment_id 6 ; Query AmOr53 ; Align 259746 15 78 ; Align 259824 42 411 ; Align 260241 179 204 ; Align 260448 247 156 ; Align 261716 300 129 ; Align 261926 343 87 ; Align 262013 373 48 ; Align 262139 390 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 445 Query range: 14 -> 304 Target range: 274356 -> 275306 15 : AsnSerHisTyrLysSerAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuL : 34 !.!:!!:!!!:! ! ||| !! ! !!|||!:!||||||:!! !!:!|||!!!|||| ThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuL 274357 : ACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGA : 274414 35 : ysProIleGlyValTrpProLeuIleTyrAsnGlnThrSerArgPheGluGlnLeuIl : 53 |||||||||||!.!||||||||| ! :::! |||!!!!:!||||||!:!:!!:! ysProIleGlyAlaTrpProLeuAla---SerProThrThrLysPheGluArgIleLe 274415 : AGCCTATAGGCGCGTGGCCGTTAGCC---TCGCCCACCACGAAATTCGAACGAATCCT : 274468 54 : eSerIleIleLeuMetGlyThrCysPheSerSerLeuLeuPheIleIleLeuProSer : 72 !||| !:::|||::: |||::!!!!! !:!!|||! !! !:!!:!!|||||| uSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSer 274469 : TTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGC : 274525 73 : GlyHisHisIleLeuPheValGluLysAsnLeuHisMetLysValLysAlaPheGlyP : 92 ! !||||||:!!.!.|||!!::!!!:!||||||:!!|||:!!||| !.!!|||| IlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyP 274526 : ATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTC : 274585 93 : roAlaGlyPheCysLeuSerSerThrIleLysTyrCysTyrLeuGlyLeuLysGlySe : 111 || !||| !!! !!!! !.!! !|||!!.||| ! ||| !|||:::.!!!. roLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLy 274586 : CTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAA : 274642 112 : rSerPheGluArgCysIleGluHisMetArgLysAspTrpMetMetValGlnAspPro : 130 !..!.!.... !!|||:!:|||||||||!:!! !||||||! !!!:||| ||| sGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgPro 274643 : AGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCG : 274699 131 : AsnHisArgThrIleMetLeuLysTyrAlaThrIleSerArgLysLeuIleThrMetC : 150 .!. !!!:! !:!:||||||||| !!|||! !|||.!!||| ! :!! ! !.!.| GluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheC 274700 : GAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCT : 274759 151 : ysAlaValPheLeuTyrThrGlyGlyMetSerTyrHisThrIleMetGlnPheLeuSe : 169 |||||!.!|||:!! ! !|||! !:!:!!!||| !..!|||! !||| !! ysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMe 274760 : GTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTAT : 274816 170 : rLysGlyLysAsnLysAspAsn<-><->TyrThrIleArgProLeuProTyrIleGly : 186 !:!! ! .!. !! ||| |||:!:!.! !||||||! !! !!.! tGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAla 274817 : GCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCT : 274873 187 : TyrAspProPhePheAspThrGlnSerSerProThrTyrGluIleValTyrCysIleH : 206 ||| ! !.!! !!! ..!.!.!!!||||||||| !!||||||||| !..! ! TyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerG 274874 : TACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGC : 274933 207 : isCysPheThrAlaMetIleMetTyrSerIleSerThrValAlaTyrSerLeuThrTh : 225 !.! ! ! :!!!.!.!.|||:!! !!|||! !:!!..!! !|||!:!||||||.!!.! lnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAl 274934 : AATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGC : 274990 226 : rIlePheValThrHisIleCysGlyGlnIleGlnValGlnIleAlaArgLeuGlnAsp : 244 !:!:|||!.!.!!||| !! !||||||:!:...|||! !!!: ! !!:!! !!: aValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGlu 274991 : CGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAG : 275047 245 : LeuVal<->GluSerLysGluLysArgLysTyrLysAspCysAspProPheAlaLeuI : 263 !!!||| .!.|||!:!!!::::...||| ..! !.!!!.!:!!: PheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValV 275048 : TTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGG : 275107 264 : leValHisAspHisValGluValLeu{Ar} >>>> Target Intron 1 >>>> : 272 !!|||.!. !!|||:!!..!||||||{!!} 74 bp alValGluHisHisLeuArgValLeu{Se}++ + 275108 : TTGTCGAACATCATCTGAGGGTACTC{AG}gt.........................a : 275208 273 : {g}PheSerAsnAsnIleGluGluAlaLeuArgGluIleCysPheThrGluIleIle : 290 {!}|||! ! ..!||||||!!:!.!:!!!.!..!|||||||||! !|||:!:.!! +{r}PheIleAlaArgIleGluAspValMetAsnArgIleCysPheMetGluLeuPhe 275209 : g{T}TTCATAGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAATTGTTC : 275262 291 : GluCysThrIleAspMetCysMetLeuGluTyrTyrCysIle : 304 :!!||||||:!:|||||||||||||||! |||||| !:!! LysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleLeu 275263 : AAGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTCTC : 275306 vulgar: AmOr53 14 304 . KQ414889.1 274356 275306 + 445 M 28 84 G 1 0 M 133 399 G 0 6 M 70 210 G 0 3 M 25 75 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274357 275306 445 + . gene_id 7 ; sequence AmOr53 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274357 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274357 275135 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274357 275306 445 + . alignment_id 7 ; Query AmOr53 ; Align 274357 15 84 ; Align 274441 44 399 ; Align 274846 177 210 ; Align 275059 247 75 ; Align 275211 273 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 419 Query range: 18 -> 202 Target range: 294672 -> 295227 19 : LysSerAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyV : 38 !:!!:!|||:!: !!!:!|||:!! |||!:! !!||||||||||||||||||: ArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyL 294673 : AGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTC : 294730 39 : alTrpProLeuIleTyrAsnGlnThrSerArgPheGluGlnLeuIleSerIleIleLe : 57 !!|||||||||||||||!:!!!.||||||!:!.!..!.:!!:!!:!!||||||||||| euTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLe 294731 : TTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCT : 294787 58 : uMetGlyThrCysPheSerSerLeuLeuPheIleIleLeuProSerGlyHisHisIle : 76 |!!:!.! !||| ! !!!!:!!||||||:!!:!!:!!|||!!!|||:!! ! ! uIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCys 294788 : GATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGT : 294844 77 : LeuPheValGluLysAsnLeuHisMetLysValLysAlaPheGlyProAlaGlyPheC : 96 :!!||| !! ||||||::: :::|||:!!||| !.!.||||||!.! !!:!! ValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrS 294845 : GTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACT : 294904 97 : ysLeuSerSerThrIleLysTyrCysTyrLeuGlyLeuLysGlySerSerPheGluAr : 115 !:!! !|||! !:!!!:!||| !!! !|||! !|||||| ! !!:!!|||:!!!. erMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHi 294905 : CTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCA : 294961 116 : gCysIleGluHisMetArgLysAspTrpMetMetValGlnAspProAsnHisArgThr : 134 !||||||||| !!!!:..!!!.||||||! !:!!:!!.!.:!!|||.!.||||||.!! sCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAla 294962 : TTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCG : 295018 135 : IleMetLeuLysTyrAlaThrIleSerArgLysLeuIleThrMetCysAlaValPheL : 154 ||||||:!!||| !!|||! !:!!!!!!:!!:!:!!! !..! ! !.!!:!!.!.: IleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleI 295019 : ATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAA : 295078 155 : euTyrThrGlyGlyMetSerTyrHisThrIleMetGlnPheLeuSerLysGly<->Ly : 172 !!|||!:!..!!.!:!!|||||||||.!!|||::: |||...|||...... :! leTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGl 295079 : TCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGA : 295135 173 : sAsnLysAspAsnTyrThrIleArgProLeuProTyrIleGlyTyrAspProPhePhe : 191 !|||||| ! ||| !!||||||||| !!|||||| ! !||||||!!: !||| ! uAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheVal 295136 : GAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTA : 295192 192 : AspThrGlnSerSerProThrTyrGluIleVal : 202 |||.!! ! |||||||||||||||||||||:!! AspAlaTyrSerSerProThrTyrGluIleIle 295193 : GACGCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: AmOr53 18 202 . KQ414889.1 294672 295227 + 419 M 153 459 G 0 3 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294673 295227 419 + . gene_id 8 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294673 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294673 295227 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294673 295227 419 + . alignment_id 8 ; Query AmOr53 ; Align 294673 19 459 ; Align 295135 172 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 389 Query range: 23 -> 342 Target range: 262849 -> 264648 24 : TyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpProLeuIleT : 43 |||!:!||||||!!: !!:!|||||||||||||||||||||!.!||||||||| ! TyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerA 262850 : TACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCG : 262907 44 : yrAsnGlnThrSerArgPheGluGlnLeuIleSerIleIleLeuMetGlyThrCysPh : 62 !::: ! !||||||.!.|||!:!:!!|||!!!.!!:!!|||!!:! !..!|||!: laSer---IleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262908 : CCTCG---ATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 63 : eSerSerLeuLeuPheIleIleLeuProSerGlyHisHisIleLeuPheValGluLys : 81 !!!! !:!!|||! !! !:!!:!!|||||| !! !||||||:!!.!.! !! :!! rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 82 : AsnLeuHisMetLysValLysAlaPheGlyProAlaGlyPheCysLeuSerSerThrI : 101 |||!!!|||||||||:!!:!!!.!.!!|||||| !||| !! !!! !.!!! !| AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 102 : leLysTyrCysTyrLeuGlyLeuLysGlySerSerPheGluArgCysIleGluHisMe : 120 ||!!.||| !!::||| !||| ! .!!!.!..!.!.:!! !!|||:!::!!|||:! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 121 : tArgLysAspTrpMetMetValGlnAspProAsnHisArgThrIleMetLeuLysTyr : 139 !!:!:!!|||||| !!:||| !.!. !!!:! !|||||||||||| !! lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 140 : AlaThrIleSerArgLysLeuIleThrMetCysAlaValPheLeuTyrThrGlyGlyM : 159 |||! ! !.!!||| ! :!! !.!! ||||||:!!|||:!! ! |||.!! !| AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 160 : etSerTyrHisThrIleMetGlnPheLeuSerLysGlyLysAsnLysAspAsnTyrTh : 178 ||!!! ! ! !:!!! !||| !!!!:!!! !! .!. ! ! !||| ! || etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 179 : r<-><->IleArgProLeuProTyrIleGlyTyrAspProPhePheAspThrGlnSer : 195 | :!!||| !||||||! ! !! !||| ! !.!!.!! ..!.!.!!! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 196 : SerProThrTyrGluIleValTyrCysIleHisCysPheThrAlaMetIleMetTyrS : 215 !:!|||||| !!|||||| !! !..!! !!.! !.!.:!!!.!.!.|||:!: !: AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 216 : erIleSerThrValAlaTyrSerLeuThrThrIlePheValThrHisIleCysGlyGl : 234 !!! !!!!..!! !|||!:!.!!:!!|||.!!:!:|||!.! !||| !|||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 235 : nIleGlnValGlnIleAlaArgLeuGlnAspLeuVal<->GluSerLysGluLysArg : 252 |:!:.!.||| !!!::!! !!:!! !!!:!!!||| :!!|||!:!!!::!!!.! nLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsn 263484 : GTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAAT : 263540 253 : LysTyrLysAspCysAspProPheAlaLeuIleValHisAspHisValGluValLeu{ : 272 ||| !! !!! ! ! !.!.!.!:!!||||||.!. !!|||:!!..!||||||{ LysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeu{ 263541 : AAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTG{ : 263600 273 : Ar} >>>> Target Intron 1 >>>> {g}PheSerAsnAsnIleGluGluAl : 280 !!} 832 bp {!}|||! ! !:!! ! Se}++ +-{r}PheTyrLeuLeuHisLysLeu** 263601 : AG}gt.........................ac{T}TTTTATCTATTGCACAAATTGTG : 264456 281 : aLeuArgGluIleCysPheThrGluIleIleGluCysThrIleAspMetCysMet--- : 299 !! !|||:::... ||||||..!:!:.!!! ! !:!!!!:||||||### ****ArgGlnPheLeuPheThrSerValPheValGlnGlyTyrAsnIleCysMet### 264457 : ATAAagacaatttttgtttacttcAGTGTTTGTCCAGGGATATAATATTTGTATGAAA : 264514 300 : -LeuGluTyrTyrCysIleMetGluTrpSerValGlyAspThrIleThrLeuLeuThr : 317 #:!! ! ! !! !.!!..!||||||..! ! ||| ...||| !||| #IleThrIleAspValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThr 264515 : TATAACAATTGACGTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACA : 264571 318 : PhePheThrLeuLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGlyG : 337 !:!|||! !:!!|||||||||.!. ! !|||||||||:!!.!.||||||||||||| TyrPheMetIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyG 264572 : TATTTCATGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCG : 264631 338 : luIleLeuThrGluGln : 342 ||||||||||||||||| luIleLeuThrGluGln 264632 : AGATATTGACTGAGcag : 264648 vulgar: AmOr53 23 342 . KQ414889.1 262849 264648 + 389 M 21 63 G 1 0 M 133 399 G 0 6 M 68 204 G 0 3 M 25 75 S 0 2 5 0 2 I 0 828 3 0 2 S 1 1 M 26 78 F 0 4 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262850 264648 389 + . gene_id 9 ; sequence AmOr53 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262850 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262850 263601 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 264433 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264432 264433 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 264434 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264434 264648 . + . insertions 0 ; deletions 0 ; frameshifts 4 KQ414889.1 exonerate:protein2genome:local similarity 262850 264648 389 + . alignment_id 9 ; Query AmOr53 ; Align 262850 24 63 ; Align 262913 46 399 ; Align 263318 179 204 ; Align 263525 247 75 ; Align 264435 273 78 ; Align 264517 299 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 362 Query range: 23 -> 272 Target range: 266637 -> 267390 24 : TyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpProLeuIleT : 43 |||!:!||||||:!! !!:!|||!!!|||||||||||||||!.!||||||! !:!: TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeu- 266638 : TACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTG- : 266695 44 : yrAsnGlnThrSerArgPheGluGlnLeuIleSerIleIleLeuMetGlyThrCysPh : 62 :::! ||||||!:!.!!|||!:!:!!:!!||| ! !|||!!:! !! !|||!: --SerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266696 : --TCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 63 : eSerSerLeuLeuPheIleIleLeuProSerGlyHisHisIleLeuPheValGluLys : 81 !!!!|||:!!||||||! !:!!:!!|||!!! ! !|||:!!:!!.!.! !!!::!! rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 82 : AsnLeuHisMetLysValLysAlaPheGlyProAlaGlyPheCysLeuSerSerThrI : 101 !:!:!!!.!! !|||||||||!.!||||||||| !.!! !!! !!! !.!! !| SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 102 : leLysTyrCysTyrLeuGlyLeuLysGlySerSerPheGluArgCysIleGluHisMe : 120 ||!!.||| ! ||| !|||:::.!!!.!..!.!.... !!|||:!!|||||||| leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 121 : tArgLysAspTrpMetMetValGlnAspProAsnHisArgThrIleMetLeuLysTyr : 139 |!:!! !||||||! !!!:||| |||.!. !!!:! !:!:||||||||| !! tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 140 : AlaThrIleSerArgLysLeuIleThrMetCysAlaValPheLeuTyrThrGlyGlyM : 159 |||! !|||.!!||| ! :!! !! !.!.||||||!.!|||:!! ! !|||! !: AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 160 : etSerTyrHisThrIleMetGlnPheLeuSerLysGlyLysAsnLysAspAsnTyrTh : 178 !:.!!||| !..!|||! ! !||| !! !:!! ! !.!. ! !||| ! || euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 179 : r<-><->IleArgProLeuProTyrIleGlyTyrAspProPhePheAspThrGlnSer : 195 | :!!!.!! !||||||! ! !! !||| ! !.!..!!! ..!.!.!!! rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 196 : SerProThrTyrGluIleValTyrCysIleHisCysPheThrAlaMetIleMetTyrS : 215 ||||||||| !!||||||||| ! ! !!!.! ! ! :!!!.!.!.|||:!! !!| SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 216 : erIleSerThrValAlaTyrSerLeuThrThrIlePheValThrHisIleCysGlyGl : 234 ||! ! !..!! !|||!:!||||||.!!.!!:!:|||!.!.!!||| |||||||| erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 235 : nIleGlnValGlnIleAlaArgLeuGlnAspLeuVal<->GluSerLysGluLysArg : 252 |:!:...|||! !!!: ! !!:!!:!!!!:!!!||| ..!|||!:!!!:!..!.! nLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsn 267272 : GCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAAT : 267328 253 : LysTyrLysAspCysAspProPheAlaLeuIleValHisAspHisValGluValLeuA : 272 ||| !! !! !||| !.!!!.!:!!:!!|||.!. !!|||:!!..!||||||| LysAsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeuA 267329 : AAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGA : 267388 273 : rg : 272 || rg 267389 : GG : 267390 vulgar: AmOr53 23 272 . KQ414889.1 266637 267390 + 362 M 19 57 G 1 0 M 135 405 G 0 6 M 68 204 G 0 3 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266638 267390 362 + . gene_id 10 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266638 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266638 267390 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 266638 267390 362 + . alignment_id 10 ; Query AmOr53 ; Align 266638 24 57 ; Align 266695 44 405 ; Align 267106 179 204 ; Align 267313 247 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 348 Query range: 6 -> 273 Target range: 221327 -> 222131 7 : AspAsnIleAsnGlyGlnLeuLysAsnSerHisTyrLysSerAspIleHisTyrThrL : 26 |||!:!:!:::!..! ! ! .!.! ! !!||||||!!!:!!:!: ! ! !:!: AspSerLeuSerSerThrArgValGluTyrAspTyrLysThrAsnValLysLeuSerV 221328 : GACAGTCTGTCTTCGACTCGTGTTGAATACGATTACAAGACGAACGTGAAATTGAGCG : 221385 27 : euGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpProLeuIleTyrAsnGl : 45 !!|||:!! !!!::|||:!!|||||||||||||||||||||||| ! ! !||| alGlnLeuSerArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaAsn-- 221386 : TGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAAC-- : 221442 46 : nThrSerArgPheGluGlnLeuIleSerIleIleLeuMetGlyThrCysPheSerSer : 64 ! !|||! ! ! |||::!! !:!!! ! :!::!!! ! !..!|||!:!||| ! -IleSerThrValGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLeu 221443 : -ATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCTG : 221496 65 : LeuLeuPheIleIleLeuProSerGlyHisHisIleLeuPheValGluLysAsnLeuH : 84 :!! !|||:!!:!::!!|||!!!.!!! !:!!:!::!!.!!! !! !:!!:!!:!!: IleThrPheLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspValT 221497 : ATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTCT : 221556 85 : isMetLysValLysAlaPheGlyProAlaGlyPheCysLeuSerSerThrIleLysTy : 103 !!! !:!:!!||| !!!.|||||| !.!!||||||:!!! !:!! !:!!||||| yrAsnArgIleLysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysTy 221557 : ACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTA : 221613 104 : rCysTyrLeuGlyLeuLysGlySerSerPheGluArgCysIleGluHisMetArgLys : 122 | ! ||| !||| ! ! !!:!..!.!!.....!|||||||||!.!!!:..! ! rHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTrp 221614 : TCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATGG : 221670 123 : AspTrpMetMetValGlnAspProAsnHisArgThrIleMetLeuLysTyrAlaThrI : 142 ||||||! !! :!! !! !!!!. !!!:! !||||||:!!:!! !!|||! !. AspTrpLysAsnIleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIleP 221671 : GATTGGAAGAATATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATTT : 221730 143 : leSerArgLysLeuIleThrMetCysAlaValPheLeuTyrThrGlyGlyMetSerTy : 161 !!.!!|||::!||||||! !!!:|||.!! !!|||:!!|||!:!||| ::: || heGlyArgArgLeuIleMetIleCysThrPhePheMetTyrSerGlyPheValPheTy 221731 : TTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGTACAGTggtttcgtttttta : 221787 162 : rHisThrIleMetGlnPhe<->LeuSerLysGlyLysAsnLysAsp<->AsnTyrThr : 178 |::: ! !!!:! !||| :!!.!!||| ! :!!||| ||| ||| rTyrIleAlaIleProPheSerValGlyLysIleProAlaGlnAspValAsnValThr 221788 : ttacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaact : 221844 179 : IleArgProLeuProTyrIleGlyTyrAspProPhePheAspThrGlnSerSerProT : 198 ... |||:!! !!:! ! !! !.!! !!||||||!:!! !||||||. PheIleProMetValPheProPheSerArgPheIleValAspThrArgTyrSerProV 221845 : tttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCTG : 221904 199 : hrTyrGluIleValTyrCysIleHisCysPheThrAlaMetIleMetTyrSerIleSe : 217 .! !!||||||:!!!:!! :!!!!. !.!..!!!.! :!:|||:!!||||||!! alAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleTh 221905 : TAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTAC : 221961 218 : rThrValAlaTyrSerLeuThrThrIlePheValThrHisIleCysGlyGlnIleGln : 236 !:!!!.!|||! !||||||..!.!!!!:|||!.!..!||| !|||||||||!!:||| rSerAlaAlaCysSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMetGln 221962 : ATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCAA : 222018 237 : ValGlnIleAlaArgLeuGlnAspLeuValGluSerLysGluLysArgLysTyrLysA : 256 ||| !!!:::! !!|||:!! !!|||:!!.!..!!::!! ! ! ! ! !!!!.! ValLeuMetSerTrpLeuLysHisLeuIleAsnGlyArgAlaAspMetCysAsnAsnV 222019 : GTGTTGATGAGCTGGCTGAAACATTTGATCAACGGCCGGGCGGATATGTGTAACAACG : 222078 257 : spCysAspProPheAlaLeuIleValHisAspHisValGluValLeuArgPhe : 273 ! !.!.||| !||||||:!!.!.||||||..!:!!|||!:!!:! alAspArgArgIleAlaLysIleValAsnGlnHisValArgIleLeuGlnTyr 222079 : TGGATAGGAGAATAGCGAAGATTGTGAATCAACACGTTCGAATATTGCAGTAT : 222131 vulgar: AmOr53 6 273 . KQ414889.1 221327 222131 + 348 M 38 114 G 1 0 M 122 366 G 0 3 M 8 24 G 0 3 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221328 222131 348 + . gene_id 11 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221328 222131 . + . KQ414889.1 exonerate:protein2genome:local exon 221328 222131 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221328 222131 348 + . alignment_id 11 ; Query AmOr53 ; Align 221328 7 114 ; Align 221442 46 366 ; Align 221811 168 24 ; Align 221838 176 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 341 Query range: 14 -> 272 Target range: 256625 -> 257405 15 : AsnSerHisTyrLysSerAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuL : 34 !!.!!!:!!!:!|||||| !!! ! !!|||!:!||||||:!! !!:!|||!!!|||| LysThrAsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuL 256626 : AAGACGAATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGA : 256683 35 : ysProIleGlyValTrpProLeuIleTyrAsnGlnThrSerArgPheGluGlnLeuIl : 53 |||||||||||!.!|||||| !! :::...|||!!!! !.!!|||!:! !:! ysProIleGlyAlaTrpPro---ProSerSerSerThrThrThrLeuGluArgAsnVa 256684 : AACCTATAGGCGCATGGCCA---CCCTCGTCGTCCACTACAACCCTCGAGCGAAACGT : 256737 54 : eSerIleIleLeuMetGlyThrCysPheSerSerLeuLeuPheIleIleLeuProSer : 72 !||||||:!!|||! !..!|||!:!.!!|||:!!||||||! !:!::!!|||!!! lSerIleValLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIleProCys 256738 : TTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGT : 256794 73 : GlyHisHisIleLeuPheValGluLysAsnLeuHisMetLysValLysAlaPheGlyP : 92 !! !|||:!!!!!.!!! !!!: ! !:!!!!:!:|||||||||||| ||||||| LeuLeuHisValPheLeuAspAspAspSerPheTyrMetLysValLysAsnPheGlyP 256795 : TTGCTCCATGTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtC : 256854 93 : roAlaGlyPheCysLeuSerSerThrIleLysTyrCysTyrLeuGlyLeuLysGlySe : 111 || !.!! !!! :!!! !||| ! !!!.||| ! ||| !|||:!!|||!. roMetSerHisTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLy 256855 : CTATGAGCCATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAA : 256911 112 : rSerPheGluArgCysIleGluHisMetArgLysAspTrpMetMetValGlnAspPro : 130 !..!.!.... !|||:!!||||||!!:..!! !||||||! ||||||::! ! sAspIleArgTyrCysValGluHisIleGluThrAspTrpArgMetValArgArgGlu 256912 : AGACATACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAG : 256968 131 : AsnHisArgThrIleMetLeuLysTyrAlaThrIleSerArgLysLeuIleThrMetC : 150 !!. !!!:! !:!:|||:!!||| !!|||! !.!!.!!||| ! :!! !|||.!.| LysAspGlnGlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheC 256969 : AAGGATCAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTT : 257028 151 : ysAlaValPheLeuTyrThrGlyGlyMetSerTyrHisThrIleMetGlnPheLeuSe : 169 |||||!.!.!!:!! ! !:!||| ... ::: ..! ! !.!. !!! ysAlaAlaIleMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAsnTh 257029 : GCGCAGCTATCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACAC : 257085 170 : rLysGlyLysAsnLysAspAsnTyrThr<-><->IleArgProLeuProTyrIleGly : 186 !:!! !! :!! !! ||| ! ||| :!:||| !|||||| !! !! ! rGluIleIleHisValGlyAsnGluThrThrIleValArgValLeuProValThrVal 257086 : GGAGATAATTCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTG : 257142 187 : TyrAspProPhePheAspThrGlnSerSerProThrTyrGluIleValTyrCysIleH : 206 ||| ! !.!.!!.:!!..!.!...!||||||||| !!||||||||| !! !!!:! TyrLysLysLeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheMetG 257143 : TACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGC : 257202 207 : isCysPheThrAlaMetIleMetTyrSerIleSerThrValAlaTyrSerLeuThrTh : 225 !. !!:::!!:!!!!:||| ! !!!!! !!!!..! ! !!:!||||||.!!.! lnThrTrpSerSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAlaAl 257203 : AAACTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGC : 257259 226 : rIlePheValThrHisIleCysGlyGlnIleGlnValGlnIleAlaArgLeuGlnAsp : 244 !:!!|||!.!|||||| ! !||||||:!: |||! !!::!! !!:!! !!!: aValPheAlaThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGlu 257260 : TGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAG : 257316 245 : LeuVal<->GluSerLysGluLysArgLysTyrLysAspCysAspProPheAlaLeuI : 263 !!!||| ||||||!:!.!.:::...||| ! ! ! !.!.!.!:!!| PheValAsnGluSerArgAsnArgGluLysThrPheProPheLysGlnIleGlyValI 257317 : TTTGTGAATGAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGA : 257376 264 : leValHisAspHisValGluValLeuArg : 272 |||||.!. !!|||:!!..!||||||||| leValGluHisHisLeuArgValLeuArg 257377 : TTGTGGAGCATCATTTAAGAGTGCTGAGG : 257405 vulgar: AmOr53 14 272 . KQ414889.1 256625 257405 + 341 M 26 78 G 1 0 M 137 411 G 0 6 M 68 204 G 0 3 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256626 257405 341 + . gene_id 12 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256626 257405 . + . KQ414889.1 exonerate:protein2genome:local exon 256626 257405 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 256626 257405 341 + . alignment_id 12 ; Query AmOr53 ; Align 256626 15 78 ; Align 256704 42 411 ; Align 257121 179 204 ; Align 257328 247 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 332 Query range: 11 -> 273 Target range: 212836 -> 213625 12 : GlnLeuLysAsnSerHisTyrLysSerAspIleHisTyrThrLeuGlnMetCysGlnT : 31 |||:!!:!!:!!!!! !|||:!!!.! :::::: :::::: ! ! !!::| GlnValGluAspCysThrTyrGluLysArgValAsnLeuSerIleProTrpAsnArgT 212837 : CAGGTCGAAGACTGTACCTACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTT : 212894 32 : rpLeuLeuLysProIleGlyValTrpProLeuIleTyrAsnGlnThrSerArgPheGl : 50 ||||||||||||||! |||:!!|||||| ! ! ::! ! ..!|||! !.!!|| rpLeuLeuLysProThrGlyLeuTrpPro---AspLysSerTyrValSerProIleGl 212895 : GGCTTTTGAAACCAACGGGTTTGTGGCCC---GACAAGTCCTACGTTTCACCGATCGA : 212948 51 : uGlnLeuIleSerIleIleLeuMetGlyThrCysPheSerSerLeuLeuPheIleIle : 69 |:!! !|||:!! !:!::!!! !..!|||!:!.!!! !:!! !!:!:!!:!! uLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLeuVal 212949 : GAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTA : 213005 70 : LeuProSerGlyHisHisIleLeuPheValGluLysAsnLeuHisMetLysValLysA : 89 :!!|||!!!.!! :!!:!:!!!.!!! !! !:::|||::: ::::!!:!! IleProCysSerLeuTyrValPheLeuAspValGluAsnIlePheLysGluIleGluL 213006 : ATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaagagaTCGAAT : 213065 90 : laPheGlyProAlaGlyPheCysLeuSerSerThrIleLysTyrCysTyrLeuGlyLe : 108 !|||||| ! !!.!||||||:!!:!!:!! ! |||||| !! ||| !|| euPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLe 213066 : TGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACT : 213122 109 : uLysGlySerSerPheGluArgCysIleGluHisMetArgLysAspTrpMetMetVal : 127 | ! |||..!..!.!!...! !|||:!!|||||||||!:! ! ||||||! !! :!! uHisGlyAspAspIleArgThrCysValGluHisMetLysTyrAspTrpLysAsnIle 213123 : TCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATC : 213179 128 : GlnAspProAsnHisArgThrIleMetLeuLysTyrAlaThrIleSerArgLysLeuI : 147 ! !! !.!. !!!:! !|||||| ! ! !!|||!:!.!!.!!!:!!:!:!!: ThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleV 213180 : ACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAG : 213239 148 : leThrMetCysAlaValPheLeuTyrThrGlyGlyMetSerTyrHisThrIleMetGl : 166 !:|||!!:|||||| !!|||:!!||||||||| !! !! !||| ! !:!!:!:! alThrIleCysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuValValPr 213240 : TGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACC : 213296 167 : nPhe<->LeuSerLysGlyLysAsnLysAsp<->AsnTyrThrIleArgProLeuPro : 183 !.!! !..!||| ! ! :!!||| ||| |||.!!|||! !:!! ! oIleSerAlaAspLysMetValAlaGluAspLeuAsnValThrPheArgGlnMetVal 213297 : GATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTG : 213353 184 : TyrIleGlyTyrAspProPhePheAspThrGlnSerSerProThrTyrGluIleValT : 203 ! !! !! !.!! !!|||..!!:!! !||||||..! !!|||||| !!! ValProValSerArgPheIleValAspValArgTyrSerProValAsnGluIlePheP 213354 : GTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCT : 213413 204 : yrCysIleHisCysPheThrAlaMetIleMetTyrSerIleSerThrValAlaTyrSe : 222 :!! |||!!. !.!..!!!.!:!::!:!!::!!:!!|||:!!..!||||||! !|| heLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSe 213414 : TCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAG : 213470 223 : rLeuThrThrIlePheValThrHisIleCysGlyGlnIleGlnValGlnIleAlaArg : 241 ||||.!!.!!:!:|||!.!..!||| !|||||||||!!: :!! !!!:::! !! rLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrp 213471 : CTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGG : 213527 242 : LeuGlnAspLeuValGluSerLysGluLysArgLysTyrLysAspCysAspProPheA : 261 |||:!! !!|||:!!!!:.!!!:!||| ! ! !!.. ! !!.! !||| !.!!| LeuGluHisLeuIleAspGlyArgGluAspMetSerLysAsnValAspAspArgIleA 213528 : CTGGAACATTTGATAGACGGTAGAGAGGATATGAGCAAGAATGTGGACGACAGAATCG : 213587 262 : laLeuIleValHisAspHisValGluValLeuArgPhe : 273 ||:!!||||||:!!.!.||||||..!:!!|||!:!!:: laValIleValAsnGlnHisValArgIleLeuLysTrp 213588 : CGGTCATCGTGAACCAGCATGTGCGGATACTGAAGTGG : 213625 vulgar: AmOr53 11 273 . KQ414889.1 212836 213625 + 332 M 29 87 G 1 0 M 126 378 G 0 3 M 8 24 G 0 3 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212837 213625 332 + . gene_id 13 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212837 213625 . + . KQ414889.1 exonerate:protein2genome:local exon 212837 213625 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212837 213625 332 + . alignment_id 13 ; Query AmOr53 ; Align 212837 12 87 ; Align 212924 42 378 ; Align 213305 168 24 ; Align 213332 176 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 329 Query range: 16 -> 272 Target range: 217153 -> 217924 17 : HisTyrLysSerAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProI : 36 .!.|||:::...:::|||::: ::!:!!||| ! !!::|||||||||||||||! GluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProM 217154 : GAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGA : 217211 37 : leGlyValTrpProLeuIleTyrAsnGlnThrSerArgPheGluGlnLeuIleSerIl : 55 !:|||:!!|||||| ! !! ..! |||!!!|||! !..!:!!:!!:!!! !! etGlyLeuTrpPro---AsnSerArgThrThrThrArgSerArgLysIleLeuTyrLy 217212 : TGGGTCTTTGGCCA---AACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAA : 217265 56 : eIleLeuMetGlyThrCysPheSerSerLeuLeuPheIleIleLeuProSerGlyHis : 74 !:!::!!! !.! !|||!:!.!!! !:!! !|||:!!.!!:!!|||!!!..! sLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMet 217266 : ACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATG : 217322 75 : HisIleLeuPheValGluLysAsnLeuHisMetLysValLysAlaPheGlyProAlaG : 94 :!!:!:!!!.!!! !! :!!:!!|||:!! |||:!!||| !||||||||| ! TyrValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuI 217323 : TACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGA : 217382 95 : lyPheCysLeuSerSerThrIleLysTyrCysTyrLeuGlyLeuLysGlySerSerPh : 113 !||||||:!!! !:!! !:!!||||||! !! !||| !:!! ! !:!!..!.! lePheCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIl 217383 : TCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACAT : 217439 114 : eGluArgCysIleGluHisMetArgLysAspTrpMetMetValGlnAspProAsnHis : 132 !.....!|||:!:..!...!!:..!::!||||||! !! |||::! ! !!!. !! eArgGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAsp 217440 : TCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGAC : 217496 133 : ArgThrIleMetLeuLysTyrAlaThrIleSerArgLysLeuIleThrMetCysAlaV : 152 ||| ! |||:!! ! !!|||!.!.!!.!!|||||||||:!! !:!:|||.!! ArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrP 217497 : AGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCT : 217556 153 : alPheLeuTyrThrGlyGlyMetSerTyrHisThrIleMetGlnPheLeuSerLysGl : 171 !!|||:!!|||!:!||| ::: |||::: ! !!!:! !.!! ! ! ! ! hePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyAr 217557 : TCTTCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAG : 217613 172 : y<-><->LysAsnLysAspAsnTyrThrIleArgProLeuProTyrIleGlyTyrAsp : 188 ! ..!.!.!!.! ||| !|||.!!! !|||||| !!:! ! ! ! gIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLys 217614 : AATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAG : 217670 189 : ProPhePheAspThrGlnSerSerProThrTyrGluIleValTyrCysIleHisCysP : 208 !.!!.!!||||||!::! !!!!|||||| !!|||||||||!:!! !:!!!!.! . TyrIleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuI 217671 : TATATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGA : 217730 209 : heThrAlaMetIleMetTyrSerIleSerThrValAlaTyrSerLeuThrThrIlePh : 227 !!.!!!.! :!:|||:!!.!!|||!!!:!!!.!|||! !||||||.!!.!! !|| leAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPh 217731 : TCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTT : 217787 228 : eValThrHisIleCysGlyGlnIleGlnValGlnIleAlaArgLeuGlnAspLeuVal : 246 |!.!..!||| !||||||||||||:!!||| !!!: ! !!|||||| !!|||:!! eAlaValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIle 217788 : CGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATC : 217844 247 : GluSerLysGluLysArgLysTyrLysAspCysAspProPheAlaLeuIleValHisA : 266 !!:.!!!:!! ! ! ! !!.. !!! ! !! ! !.!!||| !|||||| !. AspGlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerG 217845 : GACGGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTC : 217904 267 : spHisValGluValLeuArg : 272 !.||||||..!:!!|||!:! lnHisValArgIleLeuLys 217905 : AACACGTTCGGATATTAAAG : 217924 vulgar: AmOr53 16 272 . KQ414889.1 217153 217924 + 329 M 24 72 G 1 0 M 130 390 G 0 6 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217154 217924 329 + . gene_id 14 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217154 217924 . + . KQ414889.1 exonerate:protein2genome:local exon 217154 217924 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217154 217924 329 + . alignment_id 14 ; Query AmOr53 ; Align 217154 17 72 ; Align 217226 42 390 ; Align 217622 172 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 301 Query range: 123 -> 250 Target range: 304425 -> 304809 124 : TrpMetMetValGlnAspProAsnHisArgThrIleMetLeuLysTyrAlaThrIleS : 143 !:: ..!|||:!!..!! !!.. !!||| !!!:||||||||||||!.! !!!:. TyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetG 304426 : TATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGG : 304483 144 : erArgLysLeuIleThrMetCysAlaValPheLeuTyrThrGlyGlyMetSerTyrHi : 162 !!|||!!.|||! ! !!!:||||||:!!|||:!!||||||||||||! ! !||||| lyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHi 304484 : GTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCA : 304540 163 : sThrIleMetGlnPheLeuSer<->LysGlyLysAsnLysAspAsnTyrThrIleArg : 180 ||||:!!||||||||| !!!! ! ! ! !:!!:!! !!||| !||||||!:! sThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgThrIleLys 304541 : CACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAA : 304597 181 : ProLeuProTyrIleGlyTyrAspProPhePheAspThrGlnSerSerProThrTyrG : 200 |||||| !||| ! !|||..! !!!!.||||||..!|||!!!||||||! !|||| ProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIleTyrG 304598 : CCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACG : 304657 201 : luIleValTyrCysIleHisCysPheThrAlaMetIleMetTyrSerIleSerThrVa : 219 ||:!:||||||! !:!!||||||.!. !!.! :!!!!:|||||||||!!!.!!! luLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThrAlaGl 304658 : AATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGG : 304714 220 : lAlaTyrSerLeuThrThrIlePheValThrHisIleCysGlyGlnIleGlnValGln : 238 !|||! !.!!|||.!!.!!:!!|||!.!|||||| !||||||||||||.!.:!! yAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleVal 304715 : TGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTT : 304771 239 : IleAlaArgLeuGlnAspLeuValGluSerLysGlu : 250 !!::!!|||||| |||||||||.!.||||||||| MetSerArgLeuGlyAspLeuValAsnSerLysGlu 304772 : ATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAA : 304809 vulgar: AmOr53 123 250 . KQ414889.1 304425 304809 + 301 M 46 138 G 0 3 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304426 304809 301 + . gene_id 15 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304426 304809 . + . KQ414889.1 exonerate:protein2genome:local exon 304426 304809 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304426 304809 301 + . alignment_id 15 ; Query AmOr53 ; Align 304426 124 138 ; Align 304567 170 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 300 Query range: 0 -> 272 Target range: 226861 -> 227680 1 : MetHisAspArgSerHisAspAsnIleAsnGlyGlnLeuLysAsnSerHisTyrLysS : 20 ||| ! ! !:! !! ! |||:!! ..!! !! !.!.!:! !!|||:!!. MetLysLysGlnArgSerAlaAsnLeuAlaSerLeuAlaThrGluAsnAspTyrGlnG 226862 : ATGAAAAAACAGCGATCGGCGAACCTCGCGTCTCTCGCGACAGAGAACGACTATCAGG : 226919 21 : erAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTr : 39 .! !!:!::!! !:!:!!|||:!! !!::|||||||||||||||:!!|||:!!|| luTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTr 226920 : AATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTG : 226976 40 : pProLeuIleTyrAsnGlnThrSerArgPheGluGlnLeuIleSerIleIleLeuMet : 58 |||| ! ..!:!!!:!||||||.!.! !::!! !.!!||| :!::!! pPro---SerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMetGly 226977 : GCCG---TCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGT : 227030 59 : GlyThrCysPheSerSerLeuLeuPheIleIleLeuProSerGlyHisHisIleLeuP : 78 ! !|||!:!:!! !:!! !||| :!::!! !!|||||| :!!:!::!!. PheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrValValL 227031 : TTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTC : 227090 79 : heValGluLysAsnLeuHisMetLysValLysAlaPheGlyProAlaGlyPheCysLe : 97 !.! !! !|||..! !:!!! ! !:!!||| !.!!|||||| !..!|||! ! euGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPhePheAl 227091 : TAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGC : 227147 98 : uSerSerThrIleLysTyrCysTyrLeuGlyLeuLysGlySerSerPheGluArgCys : 116 !! !||| !:!!||||||! ! ||| !!!! ! ! !..!..!.!! ..!||| aMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCys 227148 : GATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGC : 227204 117 : IleGluHisMetArgLysAspTrpMetMetValGlnAspProAsnHisArgThrIleM : 136 :!!|||!..!!:!:! !||||||! !! :!!::! !!! !.!. !!|||!.!:!:| ValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValM 227205 : GTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGA : 227264 137 : etLeuLysTyrAlaThrIleSerArgLysLeuIleThrMetCysAlaValPheLeuTy : 155 ||:!!! !|||||| ! !.!!|||||||||||||||!!:|||.!! !!|||:!!!: etValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValPh 227265 : TGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTT : 227321 156 : rThrGlyGlyMetSerTyrHisThrIleMetGlnPheLeu<-><->SerLysGlyLys : 172 !!::... ::: ::::::! !:!!:!:! .!! ! ||| !.!! ! eSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerValAlaThr 227322 : CAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACG : 227378 173 : AsnLysAspAsnTyrThrIleArgProLeuProTyrIleGlyTyrAspProPhePheA : 192 .!. ! ! |||:!!!:! !! !! !:!!|||!:! ! ! !.!! !| GluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIleIleAlaA 227379 : GAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTG : 227438 193 : spThrGlnSerSerProThrTyrGluIleValTyrCysIleHisCysPheThrAlaMe : 211 ||..!!::! !|||||| ! !!|||||| !!!:!! :!!!!.! ! ! |||!.!!! spValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValThrGlyIl 227439 : ACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTAT : 227495 212 : tIleMetTyrSerIleSerThrValAlaTyrSerLeuThrThrIlePheValThrHis : 230 ::!::!!:!!.!!:!!!!!:!!!.!|||! !|||:!!.!!.!!:!:.!!!.!..!||| eValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHis 227496 : CGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCAT : 227552 231 : IleCysGlyGlnIleGlnValGlnIleAlaArgLeuGlnAspLeuValGluSerLysG : 250 !|||||||||!!::!!||| !:!::!! !!||| ! !!|||:!!!!:.!!!:!! AlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGlyArgA 227553 : GCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGCAGAG : 227612 251 : luLysArgLysTyrLysAspCysAspProPheAlaLeuIleValHisAspHisValGl : 269 ! ! ! !!.. ! ! ! !||| !.!!||| !|||||| ! !!||||||.. laAspMetSerLysThrLeuAspAspArgIleAlaSerIleValThrHisHisValAr 227613 : CGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACCACGTTCG : 227669 270 : uValLeuArg : 272 !:!!|||!:! gIleLeuLys 227670 : AATATTGAAG : 227680 vulgar: AmOr53 0 272 . KQ414889.1 226861 227680 + 300 M 40 120 G 1 0 M 127 381 G 0 6 M 104 312 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226862 227680 300 + . gene_id 16 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226862 227680 . + . KQ414889.1 exonerate:protein2genome:local exon 226862 227680 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226862 227680 300 + . alignment_id 16 ; Query AmOr53 ; Align 226862 1 120 ; Align 226982 42 381 ; Align 227369 169 312 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 294 Query range: 14 -> 272 Target range: 208185 -> 208962 15 : AsnSerHisTyrLysSerAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuL : 34 |||!!!:!!||||||!:!|||:!: !!:!!.!:!!!:::!! ! !||| !|||| AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 35 : ysProIleGlyValTrpProLeuIleTyrAsnGlnThrSerArgPheGluGlnLeuIl : 53 || !|||||| !|||||| ! ! :!!!:: ||| !!!!.|||.!. ! ysIleIleGlySerTrpProArgSerIleAspArg---SerTrpLeuGluAsnSerGl 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGT---TCCTGGTTAGAGAACAGCCA : 208297 54 : eSerIleIleLeuMetGlyThrCysPheSerSerLeuLeuPheIleIleLeuProSer : 72 !|||:!!|||! ! ! ! !! !!!!! !||| !||||||:!::!!|||!!! nHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThr 208298 : GCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACC : 208354 73 : GlyHisHisIleLeuPheValGluLysAsnLeuHisMetLysValLysAlaPheGlyP : 92 ||| ! :!!.!!|||! :!!:!!!!!:!! :!!:!!||| !! !.!! GlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerA 208355 : GGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCG : 208414 93 : roAlaGlyPheCysLeuSerSerThrIleLysTyrCysTyrLeuGlyLeuLysGlySe : 111 !! !.!!|||! !:!!! !:!! !! |||||| !:!! !:!!:::! !.! laLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGl 208415 : CTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGG : 208471 112 : rSerPheGluArgCysIleGluHisMetArgLysAspTrpMetMetValGlnAspPro : 130 !..!.!...!!:!|||:!!|||:!!:!:..! ||||||! ! |||:!! !! ! yAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGlu 208472 : TGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAG : 208528 131 : AsnHisArgThrIleMetLeuLysTyrAlaThrIleSerArgLysLeuIleThrMetC : 150 .!. !!|||! !||||||||| ! !!|||!:!.!!:!!||||||||||||..!!!:| GluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleC 208529 : GAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATAT : 208588 151 : ysAlaValPheLeuTyrThrGlyGlyMetSerTyrHisThrIleMetGlnPheLeuSe : 169 ||!.!!.!|||:!!||| !||| ::: |||::: ! !:!!! !.!! ! ! ysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrAr 208589 : GCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCG : 208645 170 : rLysGly<-><->LysAsnLysAspAsnTyrThrIleArgProLeuProTyrIleGly : 186 ! ! ! :!!.!. ! !|||! ||| !||| !||| !||| !! ! gAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProVal 208646 : AGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTT : 208702 187 : TyrAspProPhePheAspThrGlnSerSerProThrTyrGluIleValTyrCysIleH : 206 ! ! !.!!.!.|||..!!:!! !||||||..! !!|||||| !!||| :!!! ProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValG 208703 : CCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTAC : 208762 207 : isCysPheThrAlaMetIleMetTyrSerIleSerThrValAlaTyrSerLeuThrTh : 225 !.! !!.:!!!.!.!.:!! :!!!:!|||!!!..!! !|||! !.!!|||.!!.! lnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAl 208763 : AATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGC : 208819 226 : rIlePheValThrHisIleCysGlyGlnIleGlnValGlnIleAlaArgLeuGlnAsp : 244 !:!:.!!!.!! !||| |||||||||:!:|||:!! !!!::!! !!:!!:!! ! aLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLys 208820 : GCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAG : 208876 245 : LeuValGluSerLysGluLysArgLysTyrLysAspCysAspProPheAlaLeuIleV : 264 ||||||!!:.!!::!||| ! ..!:!! ! !!. !.!. !!!.||| !|||| LeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleV 208877 : TTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCG : 208936 265 : alHisAspHisValGluValLeuArg : 272 ||.!..!.||||||..!|||:!!!:! alGluGlnHisValArgValIleLys 208937 : TGGAGCAGCATGTTCGAGTGATCAAG : 208962 vulgar: AmOr53 14 272 . KQ414889.1 208185 208962 + 294 M 31 93 G 1 0 M 125 375 G 0 6 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 208962 294 + . gene_id 17 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208186 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208962 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208186 208962 294 + . alignment_id 17 ; Query AmOr53 ; Align 208186 15 93 ; Align 208279 47 375 ; Align 208660 172 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 276 Query range: 303 -> 410 Target range: 224317 -> 224770 304 : IleMetGluTrpSerValGlyAspThrIleThrLeuLeuThrPhePheThrLeuLeuI : 323 .!!...||||||||| ... !! !! !!:! !:!!|||!:!|||! !||||||! PheGlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuM 224318 : TTTCaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCA : 224375 324 : leSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGl : 342 !:|||...||||||||||||||||||||||||||||||||||||:!::!!.!!||||| etSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl 224376 : TGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAca : 224432 343 : n >>>> Target Intron 1 >>>> CysSerGlnIleGlyThrValSerTyrG : 352 | 65 bp |||...:::|||||| !||||||||| n++ ++CysGluLysIleGlyGlnValSerTyrM 224433 : ggt.........................agtgtgaaaaaattggacaAGTGTCGTACA : 224527 353 : luIleAspTrpTyrLysLeuSerProLysGluAlaTyrAspLeuIleLeuLeuIleSe : 371 !||||||||||||::!|||!!! !!!.:!! ! !! !||||||:!!|||:! etIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAl 224528 : TGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGC : 224584 372 : rIleSerGlnHisProProLysLeuThrAlaGlyLysIleIleGluLeuSerLeuAsn : 390 !!!:|||.!. ! !! !|||||||||||||||!!.!!::!!||||||!!!|||!.! aMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThr 224585 : GATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACC : 224641 391 : ThrPheSerThr >>>> Target Intron 2 >>>> ValAlaLysThrSerVa : 400 ||||||.!! ! 67 bp |||!.!||||||:!!|| ThrPheGlyAsp++ ++ValValLysThrAlaVa 224642 : ACTTTCGGTGACgt.........................agGTTGTCAAGACAGCTGT : 224738 401 : lValTyrLeuAsnLeuLeuArgThrValThr : 410 |!.!!:!||||||:!!|||||||||:!!||| lAlaPheLeuAsnValLeuArgThrLeuThr 224739 : CGCATTTTTGAACGTGTTACGAACATTGact : 224770 vulgar: AmOr53 303 410 . KQ414889.1 224317 224770 + 276 M 39 117 5 0 2 I 0 61 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224318 224770 276 + . gene_id 18 ; sequence AmOr53 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224318 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224318 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224655 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224655 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224656 224657 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224656 224722 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 224721 224722 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 224723 224770 . + . KQ414889.1 exonerate:protein2genome:local exon 224723 224770 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224318 224770 276 + . alignment_id 18 ; Query AmOr53 ; Align 224318 304 117 ; Align 224500 343 156 ; Align 224723 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 276 Query range: 298 -> 412 Target range: 297439 -> 297927 299 : LeuGluTyrTyrCysIleMetGluTrpSerValGlyAspThrIleThrLeuLeuThrP : 318 |||:::|||::: ...... !|||!.!..! !|||! !||| ! !:!!|||. LeuLysTyrHisPhePheGlnGlyTrpLysThrHisAspMetIlePheGlyValThrI 297440 : ttaaaatatcatttttttcaggGATGGAAAACTCACGATATGATTTTTGGGGTAACGA : 297497 319 : hePheThrLeuLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGl : 337 !! ! !!!!:!!:!!|||.!!|||||||||||||||:!!!!.|||:!! !||||| leGlyGlyPheMetLeuSerIleThrPheAsnIlePheValLeuCysHisAlaGlyGl 297498 : TCGGCGGTTTCATGCTTTCGATCACTTTTAATATATTCGTATTATGTCATGCAGGTGA : 297554 338 : uIleLeuThrGluGln >>>> Target Intron 1 >>>> CysSerGlnIleG : 347 |:!!|||..!|||:!! 73 bp ..!..!:!!.!!| uLeuLeuValGluGlu++ ++AlaGluLysPheG 297555 : ACTTCTTGTCGAGGAGgt.........................agGCTGAAAAATTCG : 297657 348 : lyThrValSerTyrGluIleAspTrpTyrLysLeuSerProLysGluAlaTyrAspLe : 366 ||!.!!.!:!!|||.!.|||!!:||||||!!.||| !!|||!!...!||| !||||| lyAsnAlaAlaTyrAsnIleGluTrpTyrAsnLeuProProAsnArgAlaLeuAspLe 297658 : GCAATGCAGCTTATAACATCGAATGGTACAACTTACCGCCAAACAGGGCTCTCGATCT : 297714 367 : uIleLeuLeuIleSerIleSerGlnHisProProLysLeuThrAlaGlyLysIleIle : 385 |:!:|||:!!|||.!!|||:!!:!! !||||||!:!||||||...|||||||||... uValLeuMetIleGlyIleAlaLysPheProProArgLeuThrGlyGlyLysIlePhe 297715 : GGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCACAggtggaaaaatattc : 297771 386 : GluLeuSerLeuAsnThrPheSerThr >>>> Target Intron 2 >>>> Va : 395 ::::::|||:!!||||||||||||.!! 73 bp || AspIleSerIleAsnThrPheSerAla++ ++Va 297772 : gatatatCGATAAACACGTTCAGTGCCgt.........................agGT : 297874 396 : lAlaLysThrSerValValTyrLeuAsnLeuLeuArgThrValThrAspTrp : 412 | !|||:!!|||||||||||||||||||||! !!:!|||:!!|||:::||| lLeuLysSerSerValValTyrLeuAsnLeuTyrGlnThrMetThrGluTrp 297875 : ACTCAAATCATCGGTAGTTTACCTGAATTTATATCAAACAATGACcgaatgg : 297927 vulgar: AmOr53 298 412 . KQ414889.1 297439 297927 + 276 M 44 132 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 69 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297440 297927 276 + . gene_id 19 ; sequence AmOr53 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 297440 297571 . + . KQ414889.1 exonerate:protein2genome:local exon 297440 297571 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 297572 297573 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 297572 297644 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 297643 297644 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 297645 297800 . + . KQ414889.1 exonerate:protein2genome:local exon 297645 297800 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 297801 297802 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 297801 297873 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 297872 297873 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 297874 297927 . + . KQ414889.1 exonerate:protein2genome:local exon 297874 297927 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297440 297927 276 + . alignment_id 19 ; Query AmOr53 ; Align 297440 299 132 ; Align 297645 343 156 ; Align 297874 395 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 275 Query range: 272 -> 409 Target range: 234524 -> 235260 273 : PheSerAsnAsnIleGluGluAlaLeuArgGluIleCysPheThrGluIleIleGluC : 292 |||! !...|||||||||.!.!.!:!!!.! !||||||.!...!|||:!::!!! !| PheIleArgAsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuValGlyC 234525 : TTTATACGGAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGAT : 234582 293 : ysThrIleAspMetCysMetLeuGluTyrTyrCysIleMet >>>> Target Int : 306 |||||:!::!!|||||||||||||||||||||! :!!! ! 189 b ysThrLeuAsnMetCysMetLeuGluTyrTyrLeuLeuThr++ 234583 : GCACGTTGAACATGTGCATGCTCGAGTATTATTTACTCACGgt............... : 234626 307 : ron 1 >>>> GluTrpSerValGlyAspThrIleThrLeuLeuThrPhePheThrL : 321 p ||| ||| ||| !:!!!:! !!! !: ++GluLysSer---------LysGluLysLeuAlaSerTyrValIleV 234627 : ..........agGAAAAgtcg---------aaggaaaaattagCTTCATACGTCATCG : 234849 322 : euLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuTh : 340 !!! !:!:|||.!.||||||||||||||||||||||||||||||||||||! ||||| alTyrValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuTh 234850 : TGTACGTGTCCATGACATTtaatatattcatattttgttACATCGGAGAGACGCTTAC : 234906 341 : rGluGln >>>> Target Intron 2 >>>> CysSerGlnIleGlyThrValS : 350 ||||||| 74 bp |||!!!:!!:!!||| ! ! rGluGln++ ++CysThrLysValGlyGluLysV 234907 : AGAGCAGgt.........................agTGTACCAAAGTCGGAGAAAAAG : 235010 351 : erTyrGluIleAspTrpTyrLysLeuSerProLysGluAlaTyrAspLeuIleLeuLe : 369 !||| !! !!!:||||||::!||| !!! !||| ||| !! !|||:!!:!!:! alTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIl 235011 : TGTACATGACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGAT : 235067 370 : uIleSerIleSerGlnHisProProLysLeuThrAlaGlyLysIleIleGluLeuSer : 388 !||||||! |||... ! !|||:!!||||||||||||.!!:!!:!!:!!||| eIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheLeuGlnMetSer 235068 : CATCTCCAGGTCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCT : 235124 389 : LeuAsnThrPheSerThr >>>> Target Intron 3 >>>> ValAlaLysTh : 398 :!! ||||||.!! ! 71 bp ||| !|||.! ValAlaThrPheGlyAsp++ ++ValPheLysAl 235125 : GTCGCAACATTTGGCGATgt.........................agGTATTTAAGGC : 235225 399 : rSerValValTyrLeuAsnLeuLeuArgThrVal : 409 !||| !!!.!|||!!!|||:!!:!!||||||||| aSerPheAlaTyrPheAsnMetIleArgThrVal 235226 : GTCTTTCGCCTACTTCAACATGATCCGCACAGTT : 235260 vulgar: AmOr53 272 409 . KQ414889.1 234524 235260 + 275 M 33 99 5 0 2 I 0 185 3 0 2 M 3 9 G 3 0 M 31 93 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234525 235260 275 + . gene_id 20 ; sequence AmOr53 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234525 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234525 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235144 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235144 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 235145 235146 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 235145 235215 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 235214 235215 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 235216 235260 . + . KQ414889.1 exonerate:protein2genome:local exon 235216 235260 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234525 235260 275 + . alignment_id 20 ; Query AmOr53 ; Align 234525 273 99 ; Align 234813 306 9 ; Align 234822 312 93 ; Align 234989 343 156 ; Align 235216 395 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 271 Query range: 18 -> 250 Target range: 204221 -> 204914 19 : LysSerAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyV : 38 :!!..!|||:!:...|||.!! !!::.!. :!! !:!!||| ! !:!!|||! GluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyA 204222 : GAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTG : 204279 39 : alTrpProLeuIleTyrAsnGlnThrSerArgPheGluGlnLeuIleSerIleIleLe : 57 .!||||||:!! ! ||| :!!|||! !||| !::!|||:!! !! !||| laTrpProIleProValAsn---SerSerProPheThrArgLeuValArgArgIleGl 204280 : CGTGGCCGATTCCAGTGAAC---TCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGA : 204333 58 : uMetGlyThrCysPheSerSerLeuLeuPheIleIleLeuProSerGlyHisHisIle : 76 ! ! !..! !::: .........:!:|||:!!|||.!! ! :!!:!: uHisValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrVal 204334 : ACACGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTG : 204390 77 : LeuPheValGluLysAsnLeuHisMetLysValLysAlaPheGlyProAlaGlyPheC : 96 !!!.!. !||||||||| ! ! !!:::::!!||| !.!!|||||| !! ! !| PheLeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnC 204391 : TTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACT : 204450 97 : ysLeuSerSerThrIleLysTyrCysTyrLeuGlyLeuLysGlySerSerPheGluAr : 115 || !! !..! !.!!||||||! ! !:!! !! !::! !..!!.!.!!:!!!: ysSerIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLy 204451 : GCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAA : 204507 116 : gCysIleGluHisMetArgLysAspTrpMetMetValGlnAspProAsnHisArgThr : 134 ! !!:!:.!. !!!:|||:::||||||!!: !!.! !||| !||| ||| ! sSerLeuAsnThrIleArgArgAspTrpIleGluAlaThrAspGluAsn---ArgLeu 204508 : GAGTTTGAACACCATCAGACGCGACTGGATAGAGGCTACGGATGAAAAT---CGGTTG : 204561 135 : IleMetLeuLysTyrAlaThrIleSerArgLysLeuIleThrMetCysAlaValPheL : 154 |||.!.! !..! ! |||! !|||.!!|||!:!:!!:!: !!!:...|||!.! !: IlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrM 204562 : ATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTA : 204621 155 : euTyrThrGlyGlyMetSerTyrHisThrIleMetGlnPheLeu<->SerLysGlyLy : 172 !!||| !||||||:!!!!!|||...||||||:!:! !!.||| .!!! ! ! etTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleVa 204622 : TGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGT : 204678 173 : sAsnLysAspAsnTyrThrIleArgProLeuProTyrIleGlyTyrAspProPhePhe : 191 !!.. |||||| !||||||||||||||||||! ! ! !||| |||||| lThrProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePhe 204679 : AACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttcttt : 204735 192 : AspThrGlnSerSerProThrTyrGluIleValTyrCysIleHisCysPheThrAlaM : 211 ::: !||| !!||||||!.!||||||||||||!:! :!:!!. !.!..!!!.!. AsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyP 204736 : aacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTT : 204795 212 : etIleMetTyrSerIleSerThrValAlaTyrSerLeuThrThrIlePheValThrHi : 230 !.:!!! |||:!!:!!! !!:!! !.!!! !.!!:!! !.!!:!:|||||| !|| heValThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHi 204796 : TTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCA : 204852 231 : sIleCysGlyGlnIleGlnValGlnIleAlaArgLeuGlnAspLeuValGluSerLys : 249 | |||.!!..!:!:::!:!! !:!: !!:!:!!.!.! ||||||!!:!.! ! sAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAla 204853 : CGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCG : 204909 250 : Glu : 250 !!: Asp 204910 : GAC : 204914 vulgar: AmOr53 18 250 . KQ414889.1 204221 204914 + 271 M 26 78 G 1 0 M 86 258 G 1 0 M 36 108 G 0 3 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204222 204914 271 + . gene_id 21 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204222 204914 . + . KQ414889.1 exonerate:protein2genome:local exon 204222 204914 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 204222 204914 271 + . alignment_id 21 ; Query AmOr53 ; Align 204222 19 78 ; Align 204300 46 258 ; Align 204558 133 108 ; Align 204669 169 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 248 Query range: 305 -> 410 Target range: 277371 -> 277842 306 : GluTrpSerValGlyAspThrIleThrLeuLeuThrPhePheThrLeuLeuIleSerP : 325 |||||||||! !.!!|||..! |||:!! !||| !|||! !:!!|||||||||. GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 326 : heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGln >>> : 343 !. |||||||||||| ! ! |||||||||||||||||||||||||||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 344 : > Target Intron 1 >>>> CysSerGlnIleGlyThrValSerTyrGluIleA : 354 72 bp |||!.!:!!:!!||| !||| !||| !! : ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 355 : spTrpTyrLysLeuSerProLysGluAlaTyrAspLeuIleLeuLeuIleSerIleSe : 373 !!|||||| ! ||| !! !|||!!: ! !:!!|||:!!|||:!!||||||! !|| snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 374 : rGlnHisProProLysLeuThrAlaGlyLysIleIleGluLeuSerLeuAsnThrPhe : 392 |... |||:::||||||||||||:::|||::::::|||:!! !!|||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 393 : SerThr >>>> Target Intron 2 >>>> ValAlaLysThrSerValValTy : 402 .!! ! 84 bp ||| !||||||!!! !!...|| GlyAsp++ ++ValIleLysThrThrPheAlaTy 277703 : GGCGATgt.........................agGTAATAAAAACCACTTTCgcgta : 277816 403 : rLeuAsnLeuLeuArgThrValThr : 410 |||||||:::|||||| !..!||| rLeuAsnIleLeuArgGlnThrThr 277817 : tttaaatattctacgCCAAACGACG : 277842 vulgar: AmOr53 305 410 . KQ414889.1 277371 277842 + 248 M 37 111 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277842 248 + . gene_id 22 ; sequence AmOr53 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277842 248 + . alignment_id 22 ; Query AmOr53 ; Align 277372 306 111 ; Align 277555 343 156 ; Align 277795 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 233 Query range: 305 -> 410 Target range: 272836 -> 273302 306 : GluTrpSerValGlyAspThrIleThrLeuLeuThrPhePheThrLeuLeuIleSerP : 325 ||||||!!!! ! !||| ! !:!||| !|||!:!|||! !:!!|||||||||. GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 326 : heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGln >>> : 343 !.|||||||||||||||||| |||||||||||||||||||||||||||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 344 : > Target Intron 1 >>>> CysSerGlnIleGlyThrValSerTyrGluIleA : 354 70 bp |||...:::|||||| !||| !||| !! : ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 355 : spTrpTyrLysLeuSerProLysGluAlaTyrAspLeuIleLeuLeuIleSerIleSe : 373 !!|||||| ! ||| !! !|||!!: ! !||||||||||||:!!||||||! !!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 374 : rGlnHisProProLysLeuThrAlaGlyLysIleIleGluLeuSerLeuAsnThrPhe : 392 !... ! ! !|||:!!|||||||||!:!|||:!! :!!|||:!! !!|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 393 : SerThr >>>> Target Intron 2 >>>> ValAlaLysThrSerValValTy : 402 .!! ! 81 bp ||| !|||!:!:!! !!!.!|| GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 403 : rLeuAsnLeuLeuArgThrValThr : 410 |||||||:!!|||||| !..!||| rLeuAsnMetLeuArgGlnThrThr 273277 : CTTAAATATGCTACGACAAACGACA : 273302 vulgar: AmOr53 305 410 . KQ414889.1 272836 273302 + 233 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273302 233 + . gene_id 23 ; sequence AmOr53 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273302 233 + . alignment_id 23 ; Query AmOr53 ; Align 272837 306 111 ; Align 273018 343 156 ; Align 273255 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 232 Query range: 23 -> 272 Target range: 236852 -> 237599 24 : TyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpProLeuIleT : 43 |||!:!|||||| ! !!:!||| !:!!||| !||||||..!||||||! !.!! TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPhe- 236853 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTC- : 236910 44 : yrAsnGlnThrSerArgPheGluGlnLeuIleSerIleIleLeuMetGlyThrCysPh : 62 :!!|||!.!.!!|||::! !|||||| !||||||! ! !! !|||!: --------SerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTy 236911 : --------TCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTA : 236958 63 : eSerSerLeuLeuPheIleIleLeuProSerGlyHisHisIleLeuPheValGluLys : 81 !!!!:!!:!!|||||| |||:!!|||!!!..! |||:!!:!!.!.! !:!! ! rThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGly 236959 : CACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGG : 237015 82 : AsnLeuHisMetLysValLysAlaPheGlyProAlaGlyPheCysLeuSerSerThrI : 101 !.!!!!:!!! !||||||||| !.!!||| !! !.!! !!! :!!! !!!!! !| ThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleI 237016 : ACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCA : 237075 102 : leLysTyrCysTyrLeuGlyLeuLysGlySerSerPheGluArgCysIleGluHisMe : 120 ||!..||| ! ||| !|||::! !!!.!!!!.!....!.!! !.!!.!.||||| leSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMe 237076 : TCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATAT : 237132 121 : tArgLysAspTrpMetMetValGlnAspProAsnHisArgThrIleMetLeuLysTyr : 139 |..!! ||||||! ! !..! ... ::: :::|||||||||||| tGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyr 237133 : GGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTAC : 237189 140 : AlaThrIleSerArgLysLeuIleThrMetCysAlaValPheLeuTyrThrGlyGlyM : 159 |||! !.!!|||||| ! ! ! ! |||.!!:!!|||:!!:!! !||| !: AlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleL 237190 : GCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATAC : 237249 160 : etSerTyrHisThrIleMetGlnPheLeuSerLysGlyLysAsnLysAspAsnTyrTh : 178 !:.!!||| !..!!!:! !! ! !!!!! !! ! ! ||| ! || euGlyTyrCysValMetThrAlaSerThrThrMetValValValValGlyAsnLysTh 237250 : TTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGAC : 237306 179 : r<-><->IleArgProLeuProTyrIleGlyTyrAspProPhePheAspThrGlnSer : 195 | :!:||| !||||||! ! !||| ! !.!!.!! ..!.!.!!! rThrIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThr 237307 : TACGATCTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACG : 237363 196 : SerProThrTyrGluIleValTyrCysIleHisCysPheThrAlaMetIleMetTyrS : 215 !:! !!! ! !!!!:|||||| !! !!!.! !.!!:!!!.!.!.||| ! !!! AsnThrMetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnA 237364 : AATACTATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACA : 237423 216 : erIleSerThrValAlaTyrSerLeuThrThrIlePheValThrHisIleCysGlyGl : 234 :!! !:!!! ! !!.! |||||||||!:! !.!...!:!!||| ! !||||| snSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGl 237424 : ACAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCA : 237480 235 : nIleGlnValGlnIleAlaArgLeuGlnAspLeuVal<->GluSerLysGluLysArg : 252 |:!:...||| !!: ! !:!!:!!|||!!!||| |||:!!!:!...!:! !! nLeuSerValValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgGly 237481 : GTTGAGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGG : 237537 253 : LysTyrLysAspCysAspProPheAlaLeuIleValHisAspHisValGluValLeuA : 272 ||| !! ! !!! !||| !.!. !! !||||||.!.!!:|||:!!..!||||||! LysAspAspHisPheAspGluIleProThrIleValGluGluHisLeuArgValLeuL 237538 : AAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGA : 237597 273 : rg : 272 :! ys 237598 : AG : 237599 vulgar: AmOr53 23 272 . KQ414889.1 236852 237599 + 232 M 19 57 G 3 0 M 133 399 G 0 6 M 68 204 G 0 3 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236853 237599 232 + . gene_id 24 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236853 237599 . + . KQ414889.1 exonerate:protein2genome:local exon 236853 237599 . + . insertions 9 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 236853 237599 232 + . alignment_id 24 ; Query AmOr53 ; Align 236853 24 57 ; Align 236910 46 399 ; Align 237315 179 204 ; Align 237522 247 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 227 Query range: 13 -> 245 Target range: 194141 -> 194831 14 : LysAsnSerHisTyrLysSerAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuL : 33 :::||| !:!!||||||! !|||! !.!.|||.!!:!!!:!:!:...:!! !|||| ArgAsnValAsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuL 194142 : CGCAACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTC : 194199 34 : euLysProIleGlyValTrpProLeuIleTyrAsnGlnThrSerArgPheGluGlnLe : 52 ||! !|||||||||:!!|||||| !..:!! !|||! ! !!!:::!:! euThrProIleGlyIleTrpPro---------ArgGluAspSerLeuArgAspArgVa 194200 : TAACACCGATCGGTATCTGGCCA---------AGGGAGGATTCTCTTCGCGACAGAGT : 194247 53 : uIleSerIleIleLeuMetGlyThrCysPheSerSerLeuLeuPheIleIleLeuPro : 71 ! ! !.!! !! !! |||..! !|||:!!! !:!!! !|||:!!:!::!!||| lArgLeuPheAlaGlnThrGlyValValPheAlaLeuMetCysPheLeuLeuValPro 194248 : CCGACTGTTCGCTCAAACTGGCGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCT : 194304 72 : SerGlyHisHisIleLeuPheValGluLysAsnLeuHisMetLysValLysAlaPheG : 91 !! ! !:!!! !! !|||! ! :!!:!!||| ! ! ! :!!|||!.!.!!! HisValIleTyrThrTyrPheAspCysGluAspLeuThrArgTyrMetLysValIleA 194305 : CACGTGATCTACACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCG : 194364 92 : lyProAlaGlyPheCysLeuSerSerThrIleLysTyrCysTyrLeuGlyLeuLysGl : 110 .! !! !! !||| !!|||! !:!!! !||||||!:!!! :!! !:!!!!. ! laAlaGlnValPheSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnAr 194365 : CGGCGCAAGTGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAG : 194421 111 : ySerSerPheGluArgCysIleGluHisMetArgLysAspTrpMetMetValGlnAsp : 129 !!.!..!.!!..! !|||:!: !.!.|||..!! !.!.!::! |||:!! ! gLysGluIleArgPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCys 194422 : GAAAGAGATCAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGC : 194478 130 : ProAsnHisArgThrIleMetLeuLysTyrAlaThrIleSerArgLysLeuIleThrM : 149 !.!. !!||| !:!:||| !!!.! !|||! !|||.!!||| !!!! !|||: GluGluAspArgGlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrL 194479 : GAGGAGGATCGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCC : 194538 150 : etCysAlaValPheLeuTyrThrGlyGlyMetSerTyrHisThrIleMetGlnPheLe : 168 !!! ! !! !.!!! !||| !|||!.!:!! !!||||||! !|||:!:! .!.:! euTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMe 194539 : TGTACTTGGGACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGAT : 194595 169 : uSerLysGly<->LysAsnLysAspAsnTyrThrIleArgProLeuProTyrIleGly : 186 !|||:!! !! !!.:!!|||||| !||| ! !||||||||||||:!:.!! tSerGluArgIleValLysGluAspAsnSerThrGlnIleProLeuProTyrLeuSer 194596 : GTCGGAGAGGATTGTCAAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGC : 194652 187 : TyrAspProPhePheAspThrGlnSerSerProThrTyrGluIleValTyrCysIleH : 206 !! !! !||||||! ! !:!!..!||||||! !|||||||||..!!:! ! ! AsnTyrValPhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerG 194653 : AACTATGTTTTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGC : 194712 207 : isCysPheThrAlaMetIleMetTyrSerIleSerThrValAlaTyrSerLeuThrTh : 225 !. .!.! !::!! |||!!:! |||! !:! !! ! !|||||||||..!.! lnIleLeuIleSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAl 194713 : AGATACTGATTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGC : 194769 226 : rIlePheValThrHisIleCysGlyGlnIleGlnValGlnIleAlaArgLeuGlnAsp : 244 !! !.!!:!!! !||| !|||||| !.!!:!!||| ! ! !|||:!!:!! ! aThrIleIleMetHisCysCysGlyLeuPheGluValThrSerArgArgMetGluThr 194770 : TACTATTATTATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGATGGAGACT : 194826 245 : Leu : 245 :!! Ile 194827 : ATT : 194831 vulgar: AmOr53 13 245 . KQ414889.1 194141 194831 + 227 M 27 81 G 3 0 M 128 384 G 0 3 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194142 194831 227 + . gene_id 25 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194142 194831 . + . KQ414889.1 exonerate:protein2genome:local exon 194142 194831 . + . insertions 3 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 194142 194831 227 + . alignment_id 25 ; Query AmOr53 ; Align 194142 14 81 ; Align 194223 44 384 ; Align 194610 172 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 226 Query range: 300 -> 396 Target range: 258249 -> 258627 301 : TyrTyrCysIleMetGluTrpSerValGlyAspThrIleThrLeuLeuThrPhePheT : 320 :::||| ......|||||||||..! ||| ...||| :::::!|||! PheTyrTyrPheGlnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheM 258250 : ttttattattttcaggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTA : 258307 321 : hrLeuLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLe : 339 !:!!|||||||||...:::||||||||||||:::...|||||||||||||||||||| etIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLe 258308 : TGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATT : 258364 340 : uThrGluGln >>>> Target Intron 1 >>>> CysSerGlnIleGlyThrV : 349 |||||||||| 90 bp |||!.!:!!:!!||| !| uThrGluGln++ ++CysLysLysValGlyAspV 258365 : AACAGAACAGgt.........................agTGCAAGAAAGTTGGCGACG : 258484 350 : alSerTyrGluIleAspTrpTyrLysLeuSerProLysGluAlaTyrAspLeuIleLe : 368 || !||| !! !||||||||| ! ||| !! !|||..! ! !||||||||||| alValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLe 258485 : TGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTT : 258541 369 : uLeuIleSerIleSerGlnHisProProLysLeuThrAlaGlyLysIleIleGluLeu : 387 |:!!|||:!! !|||... ! !:!!:!!||||||||||||.........::! uValIleAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePheHisMet 258542 : GGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatG : 258598 388 : SerLeuAsnThrPheSerThrValAla : 396 |||:!! !!||||||||| !|||::! SerIleTyrThrPheSerAspValSer 258599 : TCCATTTACACATTCAGCGATGTGAGT : 258627 vulgar: AmOr53 300 396 . KQ414889.1 258249 258627 + 226 M 42 126 5 0 2 I 0 86 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258250 258627 226 + . gene_id 26 ; sequence AmOr53 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 258250 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258250 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258627 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258627 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258250 258627 226 + . alignment_id 26 ; Query AmOr53 ; Align 258250 301 126 ; Align 258466 343 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 341 -> 409 Target range: 292389 -> 292593 342 : GlnCysSerGlnIleGlyThrValSerTyrGluIleAspTrpTyrLysLeuSerProL : 361 ||| !!|||:!!|||!.! !!.!||||||!!:! !!!:||||||!!.||| !! !: GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 362 : ysGluAlaTyrAspLeuIleLeuLeuIleSerIleSerGlnHisProProLysLeuTh : 380 :!:!!||| !|||:!!:!!|||:!!:!!:!!|||!!!:!!|||||| !|||||||| rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 381 : rAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSerThrValAlaLysThrSer : 399 |||||||||||||.!!! ||||||||||||||||||.!!.!!||| !:!!:!!!.! rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSerLys 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCAAAA : 292561 400 : ValValTyrLeuAsnLeuLeuArgThrVal : 409 :!!|||! :!!:!!! ! !|||! !||| LeuValLeuIleHis***GluArgIleVal 292562 : CTAGTCTTGATACACTAAGAACGTATAGTT : 292593 vulgar: AmOr53 341 409 . KQ414889.1 292389 292593 + 158 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 292593 158 + . gene_id 27 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292390 292593 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292593 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 292593 158 + . alignment_id 27 ; Query AmOr53 ; Align 292390 342 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 341 -> 407 Target range: 264723 -> 265001 342 : GlnCysSerGlnIleGlyThrValSerTyrGluIleAspTrpTyrLysLeuSerProL : 361 ||||||!.!:!!:!!||| !||| !||| ! :!!|||||| ! ||| !! !| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 362 : ysGluAlaTyrAspLeuIleLeuLeuIleSerIleSerGlnHisProProLysLeuTh : 380 ||!!: ! !||||||||||||:!!|||! !! !|||... ! !|||!!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 381 : rAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSerThr >>>> Target I : 395 |||||||||||||:!!.!.:!!|||:!! !!||||||||| ! 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 396 : ntron 1 >>>> ValAlaLysThrSerValValTyrLeuAsnLeuLeuArg : 407 bp ||| !|||:!!||| !!..!|||||||||||||||||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArg 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGC : 265001 vulgar: AmOr53 341 407 . KQ414889.1 264723 265001 + 144 M 53 159 5 0 2 I 0 76 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265001 144 + . gene_id 28 ; sequence AmOr53 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265001 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265001 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265001 144 + . alignment_id 28 ; Query AmOr53 ; Align 264724 342 159 ; Align 264963 395 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 341 -> 404 Target range: 230244 -> 230433 342 : GlnCysSerGlnIleGlyThrValSerTyrGluIleAspTrpTyrLysLeuSerProL : 361 ||||||!!!:!!:!!||| ! !|||||| !|||!!:||||||::!|||!!! !! GlnCysArgLysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyA 230245 : CAGTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAA : 230302 362 : ysGluAlaTyrAspLeuIleLeuLeuIleSerIleSerGlnHisProProLysLeuTh : 380 !.:!! ! ! !! !||||||:!!|||:!!!!:|||.!. ! !! !!|||!!!|| snLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheTh 230303 : ACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTAC : 230359 381 : rAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSerThrValAlaLysThrSer : 399 |||||||!!.!!::!!|||||||||:!!|||||||||||| !|||::!! ! !! ! rAlaGlyAsnMetValGluLeuSerValAsnThrPheSerAspValSerIleIlePhe 230360 : AGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGACGTAAGTATCATATTC : 230416 400 : ValValTyrLeuAsn : 404 !|||||| !||| SerValTyrThrAsn 230417 : TCTGTTTACACGAAT : 230433 vulgar: AmOr53 341 404 . KQ414889.1 230244 230433 + 139 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230245 230433 139 + . gene_id 29 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230245 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230245 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230245 230433 139 + . alignment_id 29 ; Query AmOr53 ; Align 230245 342 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 341 -> 401 Target range: 244655 -> 244835 342 : GlnCysSerGlnIleGlyThrValSerTyrGluIleAspTrpTyrLysLeuSerProL : 361 ||||||! !:!!:!!||| !||| !||| !! !||||||||| ! ||| !!! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 362 : ysGluAlaTyrAspLeuIleLeuLeuIleSerIleSerGlnHisProProLysLeuTh : 380 :!..! ! !||||||||||||:!!|||!.! !|||.!. ! !:!!:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 381 : rAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSerThrValAlaLysThrSer : 399 ||||||||||:!!:!!.!.:!!|||||| !!||||||.!! !|||::!:!!|||!.! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrLys 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAA : 244827 400 : ValVal : 401 :!!||| LeuVal 244828 : CTTGTT : 244835 vulgar: AmOr53 341 401 . KQ414889.1 244655 244835 + 132 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244835 132 + . gene_id 30 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244835 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244835 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244835 132 + . alignment_id 30 ; Query AmOr53 ; Align 244656 342 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 341 -> 401 Target range: 254271 -> 254451 342 : GlnCysSerGlnIleGlyThrValSerTyrGluIleAspTrpTyrLysLeuSerProL : 361 ||||||! !:!!:!!||| !||| !||| !! !||||||||| ! ||| !!! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 362 : ysGluAlaTyrAspLeuIleLeuLeuIleSerIleSerGlnHisProProLysLeuTh : 380 :!..! ! !||||||||||||:!!|||!!! !|||.!. ! !:!!:!!|| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 381 : rAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSerThrValAlaLysThrSer : 399 |||||||||||||......:::|||||| !!||||||.!! !|||::!:!!|||!:! rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 254443 400 : ValVal : 401 :!!||| LeuVal 254444 : CTTGTT : 254451 vulgar: AmOr53 341 401 . KQ414889.1 254271 254451 + 132 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254451 132 + . gene_id 31 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254451 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254451 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254451 132 + . alignment_id 31 ; Query AmOr53 ; Align 254272 342 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 341 -> 400 Target range: 238625 -> 238802 342 : GlnCysSerGlnIleGlyThrValSerTyrGluIleAspTrpTyrLysLeuSerProL : 361 ||||||! !:!!:!!||| !||| !||| !! !||||||||| ! ||| !!! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 362 : ysGluAlaTyrAspLeuIleLeuLeuIleSerIleSerGlnHisProProLysLeuTh : 380 :!..! ! !||||||||||||:!!|||!.! !|||.!. ! !|||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 381 : rAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSerThrValAlaLysThrSer : 399 ||||||||||:!!:!!.!.:!!|||||| !!||||||.!! !|||::!:!!|||!:! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 400 : Val : 400 :!! Leu 238798 : CTT : 238802 vulgar: AmOr53 341 400 . KQ414889.1 238625 238802 + 131 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238802 131 + . gene_id 32 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238802 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238802 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238802 131 + . alignment_id 32 ; Query AmOr53 ; Align 238626 342 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 305 -> 344 Target range: 291368 -> 291485 306 : GluTrpSerValGlyAspThrIleThrLeuLeuThrPhePheThrLeuLeuIleSerP : 325 ||||||..! !.!!|||:!!||| !:!!||||||!:! !!|||||||||! !|||| GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 326 : heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGlnCysSe : 344 ||||||||||||||.!.||||||||||||:!!||||||:!!||| !! !||| || heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGlnValSe 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAGGTAAG : 291483 345 : r : 344 | r 291484 : T : 291485 vulgar: AmOr53 305 344 . KQ414889.1 291368 291485 + 130 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 291485 130 + . gene_id 33 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 291369 291485 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291485 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 291485 130 + . alignment_id 33 ; Query AmOr53 ; Align 291369 306 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 294 -> 342 Target range: 210630 -> 210774 295 : AspMetCysMetLeuGluTyrTyrCysIleMetGluTrpSerValGlyAspThrIleT : 314 |||!!: !! !..! ! !:! !:!! !||||||..! ! !||| !!|||! AspIleSerSerAspSerGlnPheLeuLeu***GluTrpAspSerLysAspProIleS 210631 : GATATAAGTTCTGATTCGCAATTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCA : 210688 315 : hrLeuLeuThrPhePheThrLeuLeuIleSerPheThrPheAsnIlePheIlePheCy : 333 :! !||||||!:!.!...!||||||! !||| !!||||||||||||||||||||||| erSerLeuThrTyrIleValLeuLeuThrSerValThrPheAsnIlePheIlePheCy 210689 : GCAGTCTGACGTACATAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTG : 210745 334 : sTyrIleGlyGluIleLeuThrGluGln : 342 |||||||||||||:!:|||.!!|||||| sTyrIleGlyGluValLeuAlaGluGln 210746 : TTACATCGGTGAAGTGTTGGCTGAACAg : 210774 vulgar: AmOr53 294 342 . KQ414889.1 210630 210774 + 127 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210631 210774 127 + . gene_id 34 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 210631 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210631 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210631 210774 127 + . alignment_id 34 ; Query AmOr53 ; Align 210631 295 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 305 -> 342 Target range: 219328 -> 219439 306 : GluTrpSerValGlyAspThrIleThrLeuLeuThrPhePheThrLeuLeuIleSerP : 325 ||||||!.! !..!|||..!! !:! !:!!|||!:!.!!! !||||||||||||. GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 326 : heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGln : 342 !.|||||||||||||||||||||||||||||||||||||||:!!.!!|||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: AmOr53 305 342 . KQ414889.1 219328 219439 + 126 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219439 126 + . gene_id 35 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219439 126 + . alignment_id 35 ; Query AmOr53 ; Align 219329 306 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 297 -> 344 Target range: 305076 -> 305217 298 : MetLeuGluTyrTyrCysIleMetGluTrpSerValGlyAspThrIleThrLeuLeuT : 317 .!.||| ||| ..!!!:|||..! !.!!:!!|||:!!!:!||| !| PheLeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrT 305077 : TTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAA : 305134 318 : hrPhePheThrLeuLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGl : 336 ||!:! ..!|||||||||||| ! ||||||||||||||||||!!.||||||||||| hrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGl 305135 : CATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGG : 305191 337 : yGluIleLeuThrGluGlnCysSer : 344 ||||||||||! !|||:!! ||| yGluIleLeuMetGluLysValSer 305192 : TGAGATTCTTATGGAAAAGGTGagt : 305217 vulgar: AmOr53 297 344 . KQ414889.1 305076 305217 + 126 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305077 305217 126 + . gene_id 36 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305077 305217 . + . KQ414889.1 exonerate:protein2genome:local exon 305077 305217 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305077 305217 126 + . alignment_id 36 ; Query AmOr53 ; Align 305077 298 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 345 -> 396 Target range: 206251 -> 206404 346 : IleGlyThrValSerTyrGluIleAspTrpTyrLysLeuSerProLysGluAlaTyrA : 365 :!:||| !..!|||! ! !:!::!!||||||:::||| !! !!:!.!.||| !. ValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgS 206252 : GTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCT : 206309 366 : spLeuIleLeuLeuIleSerIleSerGlnHisProProLysLeuThrAlaGlyLysIl : 384 .!:!!||||||:!!|||:!!!!:|||.!.:!!||| !||||||||||||||||||!! erMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMe 206310 : CTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAAT : 206366 385 : eIleGluLeuSerLeuAsnThrPheSerThrValAla : 396 :.!!|||:!!|||||| !!:!|||!!! !|||::! tPheGluMetSerLeuAlaSerPheThrAspValSer 206367 : GTTCGAAATGTCTTTAGCTAGTTTCACCGATGTAAGT : 206404 vulgar: AmOr53 345 396 . KQ414889.1 206251 206404 + 121 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206252 206404 121 + . gene_id 37 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206252 206404 . + . KQ414889.1 exonerate:protein2genome:local exon 206252 206404 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206252 206404 121 + . alignment_id 37 ; Query AmOr53 ; Align 206252 346 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 297 -> 342 Target range: 214605 -> 214740 298 : MetLeuGluTyrTyrCysIleMetGluTrpSerValGlyAspThrIleThrLeuLeuT : 317 :::::::::::: ::: ||||||!:! !..!:!! !! !||| !:!!| IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 318 : hrPhePheThrLeuLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGl : 336 ||!:! ! ..!|||! !||||||...|||||||||||||||||||||||||||||||| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 337 : yGluIleLeuThrGluGln : 342 ||||:!!:!!:!!|||||| yGluLeuValSerGluGln 214721 : CGAGCTTGTGTCTGAACAG : 214740 vulgar: AmOr53 297 342 . KQ414889.1 214605 214740 + 121 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 214740 121 + . gene_id 38 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 214740 121 + . alignment_id 38 ; Query AmOr53 ; Align 214606 298 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 305 -> 341 Target range: 228247 -> 228355 306 : GluTrpSerValGlyAspThrIleThrLeuLeuThrPhePheThrLeuLeuIleSerP : 325 ||||||!:! ! !!!: !! ! ! !:!!|||!:!! .!!||||||:!!|||| GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerP 228248 : GAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCT : 228305 326 : heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGlu : 341 |||||||||||||||||||||||||||||||||||||||||:!!.!!||| heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGlu 228306 : TTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAA : 228355 vulgar: AmOr53 305 341 . KQ414889.1 228247 228355 + 115 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228248 228355 115 + . gene_id 39 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 228248 228355 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228355 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228248 228355 115 + . alignment_id 39 ; Query AmOr53 ; Align 228248 306 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 305 -> 342 Target range: 283096 -> 283207 306 : GluTrpSerValGlyAspThrIleThrLeuLeuThrPhePheThrLeuLeuIleSerP : 325 |||||||||! !||||||..! |||:!! !||| !|||! !:!!|||||||||. GluTrpSerAspGlyAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 283097 : GAATGGTCTGACGGCGATGTTCAGACTATGACTACGCATTTCATGATCCTTATATCCA : 283154 326 : heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGln : 342 !. |||||||||||| ! ! ! !|||||||||:!!||||||||||||||| etCysPheAsnIlePheThrValTyrTyrIleGlyLysIleLeuThrGluGln 283155 : TgtgtttcaacatttttacAGTATACTATATCGGGAAAATACTAACTGAACAG : 283207 vulgar: AmOr53 305 342 . KQ414889.1 283096 283207 + 113 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283097 283207 113 + . gene_id 40 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283097 283207 . + . KQ414889.1 exonerate:protein2genome:local exon 283097 283207 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283097 283207 113 + . alignment_id 40 ; Query AmOr53 ; Align 283097 306 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 269 -> 304 Target range: 304930 -> 305035 270 : ValLeuArgPheSerAsnAsnIleGluGluAlaLeuArgGluIleCysPheThrGluI : 289 :!!! !||||||||| ! :!::!! !!.!|||!:!|||:!!|||||| !|||. IleTyrArgPheSerAlaIleValGlnThrValLeuGlnGluValCysPheLeuGluP 304931 : ATTTATAGATTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTTCTTGGAAT : 304988 290 : leIleGluCysThrIleAspMetCysMetLeuGluTyrTyrCysIle : 304 !!|||! ! !|||:!! !!:|||:!:|||||||||||||||||| heIleGlySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysIle 304989 : TCATTGGTTCTACCTTACTGATATGTCTACTTGAATACTACTGTATA : 305035 vulgar: AmOr53 269 304 . KQ414889.1 304930 305035 + 100 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304931 305035 100 + . gene_id 41 ; sequence AmOr53 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304931 305035 . + . KQ414889.1 exonerate:protein2genome:local exon 304931 305035 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304931 305035 100 + . alignment_id 41 ; Query AmOr53 ; Align 304931 270 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 889 Query range: 10 -> 404 Target range: 262825 -> 265007 11 : LysGluPheAsnAsnLeuAsnGluTyrSerIleGlnPheAsnLysTrpPheSerLysT : 30 :!!...|||..!!:!|||!:!!!:||||||:!:|||.!.|||::!|||.!. !||| GluSerPheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysP 262826 : GAAAGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAAC : 262883 31 : hrIleGlyValTrpProLeuProSerSerThrSerLysPheGluLysIleValThrAr : 49 !!||||||!.!||||||||| !!:!!|||! !|||!:!.!.|||::!|||:!! ! roIleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPh 262884 : CGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTT : 262940 50 : gIleLeuIleIleValCysSerIleIleThrLeuPheValIleIleProSerMetLeu : 68 !:!!||||||:!!||||||! ! !:!!! !|||! !..!:!!|||||||||!!:||| eLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeu 262941 : TCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTT : 262997 69 : HisPheIleLeuValLysGluAspIleIleSerLysLeuLysSerLeuGlyProIleS : 88 |||.!!:!!|||! ! |||:!!.!! !! !||||||:!! !|||||||||:!!. HisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuG 262998 : CATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCG : 263057 89 : erTyrCysPheGlyGlyGlyLeuAsnTyrAlaValLeuLeuLeuArgLysAsnAspIl : 107 !! ! !! |||! !||| !:!!||||||.!! !|||||||||!.!!..!!.||||| lyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIl 263058 : GTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATAT : 263114 108 : eArgTyrCysIleAspHisIleGluThrAspTrpLysValIleThrArgMetThrAsp : 126 |!:! !|||:!:.!.|||:!::!! !|||||| :!!:!:||||||:!! !||| eGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAsp 263115 : ACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGAT : 263171 127 : ArgGlnValMetLeuLysAsnAlaLysIleGlyArgIleIleSerCysCysIleValG : 146 !:!!:::!!|||||||||||||||||| !|||||| !:!::!!..!! ! !!.! GlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaI 263172 : CAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGA : 263231 147 : lyPheLeuGlnIleGlyThrPheCysPheCysThrIleLeuGlyValPheLysArgTh : 165 !|||:!!|||! .!!! !.!.||| ||| !:!! !!.! !! !! !!:!.. lePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnVa 263232 : TCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGT : 263288 166 : rIleLysIleGlyAsnAsnSerMetGluIleTyrValLeuProSerProAlaTyrLys : 184 !|||:!! !||||||.!.!!!! :!! !:!!||||||!!!|||!.!|||||| lIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLys 263289 : GATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAA : 263345 185 : <-><->IleProValAspThrAsnProGlyHisAspIleValLeuCysPheGlnTyrL : 202 ||||||||||||||||||||| !:!!!!:||| !!|||..! |||!:!| GluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheL 263346 : GAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTC : 263405 203 : euAlaAlaTyrIleThrSerAlaThrValValSerAlaPheSerPheAlaIleValPh : 221 ||:!!!.!!:!|||..!!!!||||||..!|||.!!||||||.!!.!..!! ||||| euSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPh 263406 : TGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTT : 263462 222 : eAlaCysHisAlaSerGlyGlnLeuThrIleMetIleIleTrpIleGluGluPheIle : 240 |||| !!||||||!!!|||||||||!.!:!::!!!!: !|||||| !||||||:!: eAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheVal 263463 : CGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTG : 263519 241 : AsnArgProGlnGluGluAsnLysAsnValHisIleAspLysIleSerValIleIleL : 260 |||!:! !!::!!!:||||||||||||:!!:!!.!! !:!!|||.!!||||||:!!: AsnGlnSerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValG 263520 : AACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTG : 263579 261 : ysHisHisMetArgIleLeu{Se} >>>> Target Intron 1 >>>> {r}Ph : 268 !!||||||:!!|||:!!|||{||} 831 bp {|}|| luHisHisLeuArgValLeu{Se}++ +-{r}Ph 263580 : AACATCATCTGAGAGTTCTG{AG}gt.........................aa{C}TT : 264434 269 : eLeuGluArgAlaGluHisLeuLeuSerProIle-----CysPheMetGluMetPheL : 286 ||||...! !|||:!! !:!!:!!!.. |||##### .....! :!!! !! eLeuSerIleAlaGlnIleValIleLysThrIle#####LeuLeuGlnCysLeuSerA 264435 : TTTATCTATTGCACAAATTGTGATAAagacaatttttgtttacttcAGTGTTTGTCCA : 264493 287 : ysAsnIleLeuSerIleCysLeuPheSerTyrCysIleLeuAlaGluTrpSerGluHi : 305 :!:!!|||:!!! !:!!!! !.!.!!! ! !:!!!!! !||||||..!...|| rgAspIleIlePheVal***AsnIleThrIleAspValPheGlnGluTrpGluSerHi 264494 : GGGATATAATATTTGTATGAAATATAACAATTGACGTTTTTCAGGAATGGGAAAGTCA : 264550 306 : sAsnIleArgIleLeuGlyThrTyrIleIleThrValIleAsnIleThrLeuAsnThr : 324 |:::|||::: ||| !||||||.!!!!:! !:!!|||:::!!: ! !|||! ! sAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerMetCysGlyAsnIle 264551 : tgatattcaaaatttgacTACATATTTCATGATACTGATATCAATGTGCGGCAACATT : 264607 325 : PheLeuIleCysTyrIleGlyGluValLeuThrGluArg >>>> Target Intro : 338 ||||||!!:|||||||||||||||:!!|||||||||::: 78 bp PheLeuMetCysTyrIleGlyGluIleLeuThrGluGln++ 264608 : TTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcaggt................. : 264651 339 : n 2 >>>> CysLysGluIleGlyAspMetValTyrMetThrAsnTrpTyrArgLeu : 353 ||||||:!!:!!|||!!::!!|||||||||:!!||||||||| !||| ++CysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeu 264652 : ........agTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTA : 264772 354 : ProLysLysAspIleLeuAsnLeuIleMetIleIleThrArgSerSerValGluTyrL : 373 ||| ! ||||||||||||:!!||||||:!:|||||| !||||||||||||! !!:!| ProTyrLysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheL 264773 : CCCTACAAAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTA : 264832 374 : ysMetThrAlaGlyLysIleIleAspMetSerValIleThrPheGlyAsn >>>> T : 390 ||.!.|||||||||||||||:!! !!||||||:!! !||||||.!!:!! ysPheThrAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264833 : AATTCACCGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt...... : 264885 391 : arget Intron 3 >>>> IleIleLysThrValPheGlyTyrLeuAsnIleLeuA : 402 80 bp :!!||||||:!! !||| !|||||||||:!!|||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuA 264886 : ...................aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTC : 264999 403 : rgGlnThr : 404 |||||||| rgGlnThr 265000 : GCCAAACG : 265007 vulgar: AmOr38 10 404 . KQ414889.1 262825 265007 + 889 M 174 522 G 0 6 M 82 246 S 0 2 5 0 2 I 0 827 3 0 2 S 1 1 M 12 36 F 0 5 M 58 174 5 0 2 I 0 74 3 0 2 M 52 156 5 0 2 I 0 76 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262826 265007 889 + . gene_id 1 ; sequence AmOr38 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262826 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262826 263601 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 264432 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264431 264432 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 264433 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264433 264648 . + . insertions 0 ; deletions 0 ; frameshifts 5 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264726 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265007 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265007 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262826 265007 889 + . alignment_id 1 ; Query AmOr38 ; Align 262826 11 522 ; Align 263354 185 246 ; Align 264434 268 36 ; Align 264475 280 174 ; Align 264727 338 156 ; Align 264963 390 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 767 Query range: 1 -> 299 Target range: 266586 -> 267555 2 : MetAlaAspAspIleAlaThrValGlnLysGluPheAsnAsnLeuAsnGluTyrSerI : 21 ||||||:!!!!: !..!:!!:!! !.!..!.|||!:!|||!:!!!:||||||: MetAlaAsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerL 266587 : ATGGCTAACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCC : 266644 22 : leGlnPheAsnLysTrpPheSerLysThrIleGlyValTrpProLeuProSerSerTh : 40 !:|||!!.|||::!|||||| !||| !!||||||!.!||||||! ! !||| !|| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuTh 266645 : TGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCAC : 266701 41 : rSerLysPheGluLysIleValThrArgIleLeuIleIleValCysSerIleIleThr : 59 |||||||.!!|||::!||||||:!! ! !||||||:!!:!!|||! ! ! !! ! rSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIle 266702 : ATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATA : 266758 60 : LeuPheValIleIleProSerMetLeuHisPheIleLeuValLysGluAspIleIleS : 79 ||||||..!:!!||||||!!!:!!!!!|||.!!:!!|||! ! ! |||..!||| !! LeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgT 266759 : CTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTA : 266818 80 : erLysLeuLysSerLeuGlyProIleSerTyrCysPheGlyGlyGlyLeuAsnTyrAl : 98 !!|||:!!||| !!!!||||||:!:|||:!!!! |||! !||||||:!!||||||.! hrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrTh 266819 : CGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACAC : 266875 99 : aValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleAspHisIleGluThrAsp : 117 !..!||||||||||||!..!!.!!:|||||| !|||:!!!!:|||!!::!!|||||| rThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAsp 266876 : CACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGAT : 266932 118 : TrpLysValIleThrArgMetThrAspArgGlnValMetLeuLysAsnAlaLysIleG : 137 |||!:!:!!:!:|||||| ! !|||!:!|||||||||||||||||||||!:!|||| TrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleG 266933 : TGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCG : 266992 138 : lyArgIleIleSerCysCysIleValGlyPheLeuGlnIleGlyThrPheCysPheCy : 156 ||||| !|||:!! ! ! !!.!!.!|||:!!||| !|||..!.!! !!!:!|| lyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCy 266993 : GTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTG : 267049 157 : sThrIleLeuGlyValPheLysArgThrIleLysIleGlyAsnAsnSerMetGluIle : 175 |..!||| !!.! !! !! !!:!|||:!::!!:!!||||||.!.!!!! ! :!! sValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleVal 267050 : TGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTA : 267106 176 : TyrValLeuProSerProAlaTyrLys<-><->IleProValAspThrAsnProGlyH : 193 :!!:!!||||||!!! !!!.!|||||| ||| !!|||||||||!:!||| !: HisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrA 267107 : CATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGA : 267166 194 : isAspIleValLeuCysPheGlnTyrLeuAlaAlaTyrIleThrSerAlaThrValVa : 212 !!!!:||||||||| !! |||!:!:!!:!!!.!!:!|||..!!:!:!!!:!||||| snGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValVa 267167 : ACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGT : 267223 213 : lSerAlaPheSerPheAlaIleValPheAlaCysHisAlaSerGlyGlnLeuThrIle : 231 |.!!|||||||||.!!||| !|||||||||..!||||||!!!|||||||||!:!:!: lGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerVal 267224 : CGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTG : 267280 232 : MetIleIleTrpIleGluGluPheIleAsnArgProGlnGluGluAsnLysAsnValH : 251 :!!!!:!!:||||||:!!||||||:!:|||||| !!::!!!:...|||||||||||| LeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValC 267281 : CTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTT : 267340 252 : isIleAspLysIleSerValIleIleLysHisHisMetArgIleLeu{Se} >>>> : 267 !.!!|||||||||.!!|||:!!:!!:!!||||||:!!|||:!!|||{||} ysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 267341 : GCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG}gt..... : 267392 268 : Target Intron 1 >>>> {r}PheLeuGluArgAlaGluHisLeuLeuSerPro : 278 69 bp {|}|||:!!! !||| !||| !:!!:!!||| ! ++{r}PheIleAlaArgIleGluSerValMetSerGlu 267393 : ....................ag{C}TTCATAGCACGTATCGAAAGTGTAATGAGCGAA : 267490 279 : IleCysPheMetGluMetPheLysAsnIleLeuSerIleCysLeuPheSerTyrCysI : 298 |||||||||||||||:!!|||||| !! !:!!..!||||||:!!.!!||||||! !| IleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSerTyrTyrI 267491 : ATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCTATTATA : 267550 299 : leLeu : 299 ||||| leLeu 267551 : TCCTT : 267555 vulgar: AmOr38 1 299 . KQ414889.1 266586 267555 + 767 M 183 549 G 0 6 M 82 246 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266587 267555 767 + . gene_id 2 ; sequence AmOr38 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266587 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266587 267389 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267555 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266587 267555 767 + . alignment_id 2 ; Query AmOr38 ; Align 266587 2 549 ; Align 267142 185 246 ; Align 267460 268 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 767 Query range: 7 -> 299 Target range: 274350 -> 275306 8 : ThrValGlnLysGluPheAsnAsnLeuAsnGluTyrSerIleGlnPheAsnLysTrpP : 27 !.!||| !.!.|||:!!!:!|||!:!!!:||||||:!:|||!!.|||::!|||| AsnValThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpP 274351 : AACGTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGT : 274408 28 : heSerLysThrIleGlyValTrpProLeuProSerSerThrSerLysPheGluLysIl : 46 ||! !||| !!||||||!.!||||||||| !!||| !!|||!!!|||||||||::!|| heLeuLysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIl 274409 : TCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAAT : 274465 47 : eValThrArgIleLeuIleIleValCysSerIleIleThrLeuPheValIleIlePro : 65 |:!!:!!!.!:::||||||...:::||| ! !.!!! !|||! !..!:!!|||||| eLeuSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIlePro 274466 : CCTTTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCA : 274522 66 : SerMetLeuHisPheIleLeuValLysGluAspIleIleSerLysLeuLysSerLeuG : 85 |||!!:!!!|||.!!||||||||| ! |||..!:!! ! !|||||||||! !|||| SerIlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuG 274523 : AGCATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCG : 274582 86 : lyProIleSerTyrCysPheGlyGlyGlyLeuAsnTyrAlaValLeuLeuLeuArgLy : 104 |||||:!!.!!:!!!! ||| !||||||:!!||||||.!!..!||||||||||||!. lyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSe 274583 : GTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAG : 274639 105 : sAsnAspIleArgTyrCysIleAspHisIleGluThrAspTrpLysValIleThrArg : 123 .!!.!!:|||||| !|||:!:!!:|||!!::!!|||||||||!:!:!!:!:|||||| rLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArg 274640 : CAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGA : 274696 124 : MetThrAspArgGlnValMetLeuLysAsnAlaLysIleGlyArgIleIleSerCysC : 143 ! !|||!:!||||||||||||||||||||||||||||||||| !:!!:!! !! ProGluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIleP 274697 : CCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCT : 274756 144 : ysIleValGlyPheLeuGlnIleGlyThrPheCysPheCysThrIleLeuGlyValPh : 162 ! !!.!!.!|||:!!||| !|||..!.!!|||!:!|||..!||| !!.! !! heCysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheTh 274757 : TCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCAC : 274813 163 : eLysArgThrIleLysIleGlyAsnAsnSerMetGluIleTyrValLeuProSerPro : 181 !! !!:!|||:!!:!!:!!||||||.!.!!!! :!::!!:!!||||||!!! ! rMetGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLys 274814 : TATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAA : 274870 182 : AlaTyrLys<-><->IleProValAspThrAsnProGlyHisAspIleValLeuCysP : 199 ||||||||| :!! !!|||||||||!:!||| !:!!!!:|||||||||..!! AlaTyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValLeuAlaS 274871 : GCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCT : 274930 200 : heGlnTyrLeuAlaAlaTyrIleThrSerAlaThrValValSerAlaPheSerPheAl : 218 |||!:!:!!:!!!.!!:!|||..!!:!:!!!:!!.!|||.!!|||||||||.!!|| erGlnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAl 274931 : CGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGC : 274987 219 : aIleValPheAlaCysHisAlaSerGlyGlnLeuThrIleMetIleIleTrpIleGlu : 237 | !|||||||||...||||||! !|||||||||!:!:!::!!!!:||||||||| aAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThr 274988 : CGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACC : 275044 238 : GluPheIleAsnArgProGlnGluGluAsnLysAsnValHisIleAspLysIleSerV : 257 ||||||:!:|||!.! !!::!!!::::||||||||||||:::.....!:!!|||.!!| GluPheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyV 275045 : GAGTTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCG : 275104 258 : alIleIleLysHisHisMetArgIleLeu{Se} >>>> Target Intron 1 >> : 267 ||:!!:!!:!!||||||:!!|||:!!|||{||} 74 bp alValValGluHisHisLeuArgValLeu{Se}++ 275105 : TGGTTGTCGAACATCATCTGAGGGTACTC{AG}gt....................... : 275138 268 : >> {r}PheLeuGluArgAlaGluHisLeuLeuSerProIleCysPheMetGluMet : 284 {|}|||:!!! !||| !||| !!:!!:!!!:!! !|||||||||||||||:!! ++{r}PheIleAlaArgIleGluAspValMetAsnArgIleCysPheMetGluLeu 275139 : ..ag{T}TTCATAGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAATTG : 275259 285 : PheLysAsnIleLeuSerIleCysLeuPheSerTyrCysIleLeu : 299 |||||| !! !|||..!!!:|||:!!.!!.!!|||! !|||||| PheLysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleLeu 275260 : TTCAAGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTCTC : 275306 vulgar: AmOr38 7 299 . KQ414889.1 274350 275306 + 767 M 177 531 G 0 6 M 82 246 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274351 275306 767 + . gene_id 3 ; sequence AmOr38 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274351 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274351 275135 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274351 275306 767 + . alignment_id 3 ; Query AmOr38 ; Align 274351 8 531 ; Align 274888 185 246 ; Align 275211 268 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 725 Query range: 1 -> 405 Target range: 256601 -> 258738 2 : MetAlaAspAspIleAlaThrValGlnLysGluPheAsnAsnLeuAsnGluTyrSerI : 21 |||.!!:!!!!:.!!|||..!|||:!!! !.!.|||!!.!:!! !!:!!!:||||||: MetThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerL 256602 : ATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTC : 256659 22 : leGlnPheAsnLysTrpPheSerLysThrIleGlyValTrpProLeuProSerSerTh : 40 !!|||!!.|||::!|||||| !||| !!||||||!.!||||||! ! !!|||||||| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 256660 : TCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCAC : 256716 41 : rSerLysPheGluLysIleValThrArgIleLeuIleIleValCysSerIleIleThr : 59 |!!!! .!!|||::!! !|||:!!! !:!!|||! !|||||||||! ! ! !! ! rThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIle 256717 : TACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATA : 256773 60 : LeuPheValIleIleProSerMetLeuHisPheIleLeuValLysGluAspIleIleS : 79 ||||||..!:!:||||||!!!:!!|||||| ! .!!|||! ! ! !!:..!.!! LeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrM 256774 : TTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAca : 256833 80 : erLysLeuLysSerLeuGlyProIleSerTyrCysPheGlyGlyGlyLeuAsnTyrAl : 98 |||:::|||:::...||||||!!:|||:!!!! .!! !.!! !! !||||||.! etLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrTh 256834 : tgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACAC : 256890 99 : aValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleAspHisIleGluThrAsp : 117 !:!!|||||||||!:! !!!.|||||||||||||||:!!!!:||||||||||||||| rLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAsp 256891 : GTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGAT : 256947 118 : TrpLysValIleThrArgMetThrAspArgGlnValMetLeuLysAsnAlaLysIleG : 137 |||!:!:!!:!:! !||| !! !|||!:!|||||||||:!!|||||||||!:!.!!| TrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheG 256948 : TGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCG : 257007 138 : lyArgIleIleSerCysCysIleValGlyPheLeuGlnIleGlyThrPheCysPheCy : 156 ||||| !:!::!! ! ! !!.!!.!.!!:!!|||! !|||...||||||||| lyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePh 257008 : GTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttctt : 257064 157 : sThrIleLeuGlyValPheLysArgThrIleLysIleGlyAsnAsnSerMetGluIle : 175 ..! ! !!.!:!! !! !..!! !||| ! :!:||||||.!.!!!! ! :!: eValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleVal 257065 : cgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTG : 257121 176 : TyrValLeuProSerProAlaTyrLys<-><->IleProValAspThrAsnProGlyH : 193 ||||||||| ! !!!.!|||||| :!: !|||||| !!:!||| !: ArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrA 257122 : CGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGA : 257181 194 : isAspIleValLeuCysPheGlnTyrLeuAlaAlaTyrIleThrSerAlaThrValVa : 212 !!!!:||||||:!!! !.!.||| !! !:!!:!! !|||.!!!!!.!!!:!..!|| snGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrVa 257182 : ACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGT : 257238 213 : lSerAlaPheSerPheAlaIleValPheAlaCysHisAlaSerGlyGlnLeuThrIle : 231 |||| !||||||.!!||| !||||||||| !||||||! !||||||||||||:!: lSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrVal 257239 : TAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTG : 257295 232 : MetIleIleTrpIleGluGluPheIleAsnArgProGlnGluGluAsnLysAsnValH : 251 :!:!!: |||||| !||||||:!:|||..! !!::!.!.......|||... LeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheP 257296 : CTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttc : 257355 252 : isIleAspLysIleSerValIleIleLysHisHisMetArgIleLeu{Se} >>>> : 267 ..! ! :!!|||.!!||||||:!::!!||||||:!:|||:!:|||{||} roPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Se}++ 257356 : ctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt..... : 257407 268 : Target Intron 1 >>>> {r}PheLeuGluArgAlaGluHisLeuLeuSerPro : 278 853 bp {|}||| ||| !!:!! !!.. :::... --{r}PheGlnGluTrpSerThrGlnAspIleGlnAsn 257408 : ....................ta{t}tttcaggaATGGTCTACGCaagatattcaaaat : 258289 279 : IleCysPheMetGluMetPheLysAsnIleLeuSerIleCysLeuPheSerTyrCysI : 298 ::: |||.!. ! ||||||... :::||| ||| LeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValIleCysT 258290 : ttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaatatgtt : 258349 299 : leLeuAlaGluTrpSerGluHisAsnIleArgIleLeuGlyThrTyrIleIleThrVa : 317 !:!!!.!||| ! ! !.!..!.:!!! ::: ::: ! !|| yrIleGlyGluIleLeuThrGluGlnValProGluIle***LeuIleValThrTyrVa 258350 : ACATAGGTGAAATATTAACAGAACAGGTACCagagatttaattaattgtcaCATATGT : 258406 318 : lIleAsnIleThrLeuAsnThrPheLeuIleCysTyrIleGlyGluValLeuThrGlu : 336 | !!!. ...||| ... ::: ! !..!:!!..! ! ! !! lHisLysTrpAsnLeu***LysIleSerVal---ArgThrAsnGlnThrAsnCys*** 258407 : ACACAAATGGaacttgtgaaaaatttcagta---agGACTAATCAAACGAATTGTTAA : 258460 337 : ArgCysLysGluIleGlyAspMetValTyrMetThrAsnTrpTyrArgLeuProLysL : 356 !:!||||||:!!:!!||||||:!!||||||||||||:!!|||||| !|||||| ! | GlnCysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspL 258461 : CAGTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACA : 258520 357 : ysAspIleLeuAsnLeuIleMetIleIleThrArgSerSerValGluTyrLysMetTh : 375 || ||||||:!!||||||:!!:!!|||.!!||||||||||||! !:!!!!:|| ysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleTh 258521 : AAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCAC : 258577 376 : rAlaGlyLysIleIleAspMetSerValIleThrPheGlyAsn >>>> Target I : 390 ||||||||||...... ||||||:!! !||||||.!!:!! 69 rAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAsp++ 258578 : CGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATgt............. : 258624 391 : ntron 2 >>>> IleIleLysThrValPheGlyTyrLeuAsnIleLeuArgGlnTh : 404 bp :!!||||||||| !|||!.!|||||||||:!!|||||||||.. ++ValIleLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnVa 258625 : ............agGTAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGT : 258733 405 : rThr : 405 !:!! lSer 258734 : ATCG : 258738 vulgar: AmOr38 1 405 . KQ414889.1 256601 258738 + 725 M 183 549 G 0 6 M 82 246 S 0 2 5 0 2 I 0 849 3 0 2 S 1 1 M 60 180 G 1 0 M 61 183 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256602 258738 725 + . gene_id 4 ; sequence AmOr38 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256602 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256602 257404 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 258257 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258256 258257 . + . intron_id 0 ; splice_site "ta" KQ414889.1 exonerate:protein2genome:local cds 258258 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258258 258621 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256602 258738 725 + . alignment_id 4 ; Query AmOr38 ; Align 256602 2 549 ; Align 257157 185 246 ; Align 258259 268 180 ; Align 258439 329 183 ; Align 258691 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 572 Query range: 1 -> 267 Target range: 259721 -> 260525 2 : MetAlaAspAspIleAlaThrValGlnLysGluPheAsnAsnLeuAsnGluTyrSerI : 21 |||.!!:!! ! !.! !|||:!!! !...|||!.!!:!! !!:!!!:||||||: MetThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerL 259722 : ATGACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCC : 259779 22 : leGlnPheAsnLysTrpPheSerLysThrIleGlyValTrpProLeuProSerSerTh : 40 !!|||||||||::!|||||| !||| !!||||||!.!||||||! ! !!|||||||| euGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 259780 : TCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCAC : 259836 41 : rSerLysPheGluLysIleValThrArgIleLeuIleIleValCysSerIleIleThr : 59 |!!!!:!.!!|||||||||:!!:!! !|||||||||.!!:!!|||! !! !! !! ! rThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIle 259837 : GACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATA : 259893 60 : LeuPheValIleIleProSerMetLeuHisPheIleLeuValLysGluAspIleIleS : 79 ||| !!..!:!:||||||!!!:!:||||||.!.:!!|||! !||||||..!:!: !! LeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrM 259894 : CTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACA : 259953 80 : erLysLeuLysSerLeuGlyProIleSerTyrCysPheGlyGlyGlyLeuAsnTyrAl : 98 !||| !||| !|||||||||:!!!!!:!!!! |||! !||| !!:!!||||||.! etLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrTh 259954 : TGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACAC : 260010 99 : aValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleAspHisIleGluThrAsp : 117 !..!|||||||||||| !..||||||! ! !|||:!:!!:|||:!:|||!.!||| rThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAsp 260011 : AACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGAT : 260067 118 : TrpLysValIleThrArgMetThrAspArgGlnValMetLeuLysAsnAlaLysIleG : 137 |||!:!:!!||||||||| !! !|||!:!.!.|||||||||!:! !!||||||.!!| TrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheG 260068 : TGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCG : 260127 138 : lyArgIleIleSerCysCysIleValGlyPheLeuGlnIleGlyThrPheCysPheCy : 156 ||||| !:!!:!!..!! ! !!.!!.!|||:!!||| !|||..!.!.|||||||| lyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCy 260128 : GCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTG : 260184 157 : sThrIleLeuGlyValPheLysArgThrIleLysIleGlyAsnAsnSerMetGluIle : 175 | !:!! !! !:!! !! !..!..!|||:!!:!:||||||.!.!!!! ! :!! sLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal 260185 : TTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTT : 260241 176 : TyrValLeuProSerProAlaTyrLys<-><->IleProValAspThrAsnProGlyH : 193 :!!:!!||||||!!! !!!.!|||||| ||| !|||:!! !!:!||| !: HisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetA 260242 : CATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGA : 260301 194 : isAspIleValLeuCysPheGlnTyrLeuAlaAlaTyrIleThrSerAlaThrValVa : 212 !!!!:||||||||| ! ! |||!:!:!!:!!!.!!:!|||..!!:!:!!!:!..!|| snGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrVa 260302 : ACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGT : 260358 213 : lSerAlaPheSerPheAlaIleValPheAlaCysHisAlaSerGlyGlnLeuThrIle : 231 |.!! !||||||.!!||| !|||.!..!!..!||||||!!!|||||||||!.!:!: lGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnVal 260359 : TGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTG : 260415 232 : MetIleIleTrpIleGluGluPheIleAsnArgProGlnGluGluAsnLysAsnValH : 251 :!:!!: !|||||| !||||||:!::!!..! !!::!.!...!!!.|||!!.!.!! LeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaP 260416 : CTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTC : 260475 252 : isIleAspLysIleSerValIleIleLysHisHisMetArgIleLeuSer : 267 !.!! ! :!!|||.!!||||||:!!:!!||||||:!!||| !|||!!! roPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeuThr 260476 : CTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTCACG : 260525 vulgar: AmOr38 1 267 . KQ414889.1 259721 260525 + 572 M 183 549 G 0 6 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259722 260525 572 + . gene_id 5 ; sequence AmOr38 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259722 260525 . + . KQ414889.1 exonerate:protein2genome:local exon 259722 260525 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259722 260525 572 + . alignment_id 5 ; Query AmOr38 ; Align 259722 2 549 ; Align 260277 185 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 480 Query range: 18 -> 390 Target range: 284523 -> 287222 19 : TyrSerIleGlnPheAsnLysTrpPheSerLysThrIleGlyValTrpProLeuProS : 38 ||||||:!!|||.!.|||:::|||||| !||| !!|||||||||||||||||| ! TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 39 : erSerThrSerLysPheGluLysIleValThrArgIleLeuIleIleValCysSerIl : 57 !!!!..!!!!! !!.||||||||| !:!! !:!!||| :!!:!! !!!!!.! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 58 : eIleThrLeuPheValIleIleProSerMetLeuHisPheIleLeuValLysGlu<-> : 76 !:!:! ! !|||:!!:!::!!|||!!! ||| ! :!:|||! !||| eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 77 : AspIleIleSerLysLeuLysSerLeuGlyProIleSerTyrCysPheGlyGlyGlyL : 95 |||:!! !!!!|||:!!|||! !:!!||||||:!:|||!:!|||.!. !!.!!.!: AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 96 : euAsnTyrAlaValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleAspHisIl : 114 !!!!.||| !:!!|||:!!! !||| ..! ! ||| !! ! |||:!: ! !!|| leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 115 : eGluThrAspTrpLysValIle<-><-><->ThrArgMetThrAspArgGlnValMet : 130 |....!!||||||...:!!! !::::: :::|||::::::||| eArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMet 284813 : TCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTG : 284869 131 : LeuLysAsnAlaLysIleGlyArgIleIleSerCysCysIleValGlyPheLeuGlnI : 150 ! ! !:!|||!:!||||||||| !:!::!! !! ! !!.!||||||:!! ! ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrS 284870 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATT : 284929 151 : leGlyThrPheCysPheCysThrIleLeuGlyValPheLys<->ArgThrIleLysIl : 168 !||| !|||! !!:! !|||:!::!! !:!!! !! ! |||||| ! || erGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIl 284930 : CCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCAT : 284986 169 : eGlyAsnAsnSerMetGluIleTyrValLeuProSerProAlaTyrLysIleProVal : 187 |! !|||.!.!!!:!!..! ! ! !.!!!!|||! ! ! ! ! :!! ! ! eAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 284987 : CGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCG : 285043 188 : AspThrAsnProGlyHisAspIleValLeuCysPheGlnTyrLeuAlaAlaTyrIleT : 207 !|||!:!|||..! !!!:||||||! !! !.!.|||! !|||||||||!:!:!!! ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValI 285044 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTA : 285103 208 : hrSerAlaThrValValSerAlaPheSerPheAlaIleValPheAlaCysHisAlaSe : 226 !! !:!!..!..!|||.!!|||! !|||!!.||| !||||||!.! |||!.!!! leTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCy 285104 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTG : 285160 227 : rGlyGlnLeuThrIleMetIleIleTrpIleGluGluPheIleAsnArgProGln<-> : 245 !||||||!!!! !|||:!::!:! ! !:!:!!::!!.!!:!!:!! !! !:!! sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLysGly 285161 : TGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGG : 285217 246 : GluGluAsnLysAsnValHisIleAspLysIleSerValIleIleLysHisHisMetA : 264 ..!:!!... !!:!..!||| !.!.::!:!:.!!! !||||||:!!||||||:!!! ArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuL 285218 : AGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGA : 285277 265 : rgIleLeu{Se} >>>> Target Intron 1 >>>> {r}PheLeuGluArgAl : 272 :!||||||{.!} 1494 bp {!}.!.||| !.! ysIleLeu{Gl}++ -+{y}IleLeu---PheTh 285278 : AGATACTG{GG}gt.........................gg{G}ATATTA---TTTAC : 286792 273 : aGluHisLeuLeuSerProIleCysPheMetGluMetPheLysAsnIleLeuSerIle : 291 !!!: ! ! !..! !:!:|||!:! .!.! ! ! ! |||:!!:!!.!! rAspGlyAsnArgAspAspLeuCysTyrTyrHisThrValMetAlaIleIleAlaPhe 286793 : TGACGGTAACAGAGACGACTTGTGTTATTACCATACTGTAATGGCAATAATTGCATTC : 286849 292 : CysLeuPheSerTyrCysIleLeuAlaGluTrpSerGluHisAsnIleArgIleLeuG : 311 !:!!!:!|||! ! :!!!!! !||||||..!:!! !.!.! !! ! ! ! ValMetTyrSerLeuSerValPhe***GluTrpGluGlnSerGluThrIleGlyThrI 286850 : GTCATGTACTCGTTGTCAGTTTTCTAGGAATGGGAGCAAAGTGAAACTATAGGAACGA : 286909 312 : lyThrTyrIleIleThrValIleAsnIleThrLeuAsnThrPheLeuIleCysTyrIl : 330 !|||||| !! !:!!:!!::!.!!|||!!!|||..!|||:!!:!!|||||||| leThrTyrCysThrLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIl 286910 : TCACGTATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACAT : 286966 331 : eGlyGluValLeuThrGluArg >>>> Target Intron 2 >>>> CysLysG : 340 |||||||:!!|||:!!|||!:: 74 bp ||| !: eGlyGluIleLeuSerGluGln++ ++CysLeuL 286967 : CGGTGAAATTCTCTCCGAACaggt.........................agtGCTTAA : 287070 341 : luIleGlyAspMetValTyrMetThrAsnTrpTyrArgLeuProLysLysAspIleLe : 359 !!:!!||| ..!||||||! !:!!||||||||||||||| !||| !! ysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGl 287071 : AAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCA : 287127 360 : uAsnLeuIleMetIleIleThrArgSerSerValGluTyrLysMetThrAlaGlyLys : 378 !..!||||||:!!|||.!!.!! !|||!:! !... |||:!:|||||||||||| nGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLys 287128 : AGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAG : 287184 379 : IleIleAspMetSerValIleThrPheGlyAsnIle : 390 |||||||||:!:|||:!!! !!:!||| !!!:!:!: IleIleAspLeuSerLeuSerSerPheCysSerVal 287185 : ATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTG : 287222 vulgar: AmOr38 18 390 . KQ414889.1 284523 287222 + 480 M 57 171 G 0 3 M 46 138 G 0 9 M 42 126 G 0 3 M 81 243 G 0 3 M 22 66 S 0 2 5 0 2 I 0 1490 3 0 2 S 1 1 M 2 6 G 1 0 M 67 201 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 287222 480 + . gene_id 6 ; sequence AmOr38 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284524 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 285287 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286780 286781 . + . intron_id 0 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 286782 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286782 286989 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287222 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287222 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284524 287222 480 + . alignment_id 6 ; Query AmOr38 ; Align 284524 19 171 ; Align 284698 76 138 ; Align 284845 122 126 ; Align 284974 164 243 ; Align 285220 245 66 ; Align 286783 268 6 ; Align 286789 271 201 ; Align 287064 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 443 Query range: 0 -> 266 Target range: 236798 -> 237596 1 : MetMetAlaAspAspIleAlaThrValGlnLysGluPheAsnAsnLeuAsnGluTyrS : 20 |||! !||| ! ! !!.!..!..!:!!! .!..!.!.! ! !!:!!!:|||| MetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrS 236799 : ATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACA : 236856 21 : erIleGlnPheAsnLysTrpPheSerLysThrIleGlyValTrpProLeuProSerSe : 39 ||:!!|||!::|||::!||| ! !|||!:!||||||..!||| |||..!! erLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrp------ProGlnPh 236857 : GTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGG------CCACAGTT : 236907 40 : rThrSerLysPheGluLysIleValThrArgIleLeuIleIleValCysSerIleIle : 58 !:!!|||!!..!!|||!:!! !:!!:!!|||||||||! !:!::!!|||! !! ! ! eSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAla 236908 : CTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCA : 236964 59 : ThrLeuPheValIleIleProSerMetLeuHisPheIleLeuValLysGluAspIleI : 78 ! !|||||| !|||||||||!!! !||||||.!.!!:|||! !|||! ! !.!! IleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheT 236965 : ATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCT : 237024 79 : leSerLysLeuLysSerLeuGlyProIleSerTyrCysPheGlyGlyGlyLeuAsnTy : 97 !!!!|||:!!|||! !|||||| !!:!:|||:!!!! ! ! !! !:!!!:!|| yrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTy 237025 : ACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTA : 237081 98 : rAlaValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleAspHisIleGluThr : 116 |.!!:!!||||||||||||:::!!. !||||||:!!! !.!!:!!|||!!:|||||| rThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThr 237082 : CACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACC : 237138 117 : AspTrpLysValIleThrArgMetThrAspArgGlnValMetLeuLysAsnAlaLysI : 136 ||||||!:!..!! |||||| ::::::|||||||||||| !!||||||. AspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysP 237139 : GATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAAT : 237198 137 : leGlyArgIleIleSerCysCysIleValGlyPheLeuGlnIleGlyThrPheCysPh : 155 !!.!!||| ! :!! !! ! !..! !|||:!!!!. !|||! !.!! ! !: heSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTy 237199 : TTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATA : 237255 156 : eCysThrIleLeuGlyValPheLysArgThrIleLysIleGlyAsnAsnSerMetGlu : 174 !|||..!!!: !!.! ! !! !! !..!:!! !:!!||||||!!.!!!! ! rCysValMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIle 237256 : TTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATC : 237312 175 : IleTyrValLeuProSerProAlaTyrLys<-><->IleProValAspThrAsnProG : 192 :!: !|||||||||! !||| !|||||| :!!||||||||||||||| !! LeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrM 237313 : TTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTA : 237372 193 : lyHisAspIleValLeuCysPheGlnTyrLeuAlaAlaTyrIleThrSerAlaThrVa : 211 !:!!|||||||||:!!! ! |||!:!|||:!!!.!!:!|||.!!!:! !!:!!. etAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAl 237373 : TGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGC : 237429 212 : lValSerAlaPheSerPheAlaIleValPheAlaCysHisAlaSerGlyGlnLeuThr : 230 !:!!|||!.!.!.|||.!!.!!! !!.!.!..!!! ||||||||||||||||||!:! aIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSer 237430 : GATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGC : 237486 231 : IleMetIleIleTrpIleGluGluPheIleAsnArgProGlnGluGluAsnLysAsnV : 250 :!::!:!!::!:! !||||||!!:|||:!:!:!..! !!::!.....!...|||:!!! ValValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspA 237487 : GTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACG : 237546 251 : alHisIleAspLysIleSerValIleIleLysHisHisMetArgIleLeu : 266 !|||.!!|||:!!||| !!..!|||:!::!!.!.|||:!!|||:!:||| spHisPheAspGluIleProThrIleValGluGluHisLeuArgValLeu 237547 : ATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTG : 237596 vulgar: AmOr38 0 266 . KQ414889.1 236798 237596 + 443 M 34 102 G 2 0 M 148 444 G 0 6 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236799 237596 443 + . gene_id 7 ; sequence AmOr38 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236799 237596 . + . KQ414889.1 exonerate:protein2genome:local exon 236799 237596 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236799 237596 443 + . alignment_id 7 ; Query AmOr38 ; Align 236799 1 102 ; Align 236901 37 444 ; Align 237351 185 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 401 Query range: 17 -> 269 Target range: 232456 -> 233215 18 : GluTyrSerIleGlnPheAsnLysTrpPheSerLysThrIleGlyValTrpProLeuP : 37 ||||||||||||||| ! |||:::|||||| !! ! !!!!:|||!.!||||||! ! GluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgV 232457 : GAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTG : 232514 38 : roSerSerThrSerLysPheGluLysIleValThrArgIleLeuIleIleValCysSe : 56 !!!!..!||||||!:! !:!!:!!:!!:!!.!!!:!:!:|||! !:!!..!||| alThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHi 232515 : TTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCA : 232571 57 : rIleIleThrLeuPheValIleIleProSerMetLeuHisPheIleLeuValLysGlu : 75 ! !:!:! !:!!! ! !|||:!!|||!!!!!:||| !.!!:!:!!!! ! ! ! sSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThr 232572 : TTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACG : 232628 76 : AspIleIleSerLysLeuLysSerLeuGlyProIleSerTyrCysPheGlyGlyGlyL : 95 ..!:!! ..!!:!:!!||||||:!!||||||!!:|||:!!! !.!. !|||! !| SerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluL 232629 : AGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAAT : 232688 96 : euAsnTyrAlaValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleAspHisIl : 114 ||||||||..! !|||||| !!:! !|||||||||! !||||||:!:!!:!!.:! euAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnVa 232689 : TGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGT : 232745 115 : eGluThrAspTrpLysValIleThrArgMetThrAspArgGlnValMetLeuLysAsn : 133 ::!! !||||||::! !:!!! !!:! ..! !!|||.!.:!!|||||||||||| lLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsn 232746 : GAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAAC : 232802 134 : AlaLysIleGlyArgIleIleSerCysCysIleValGlyPheLeuGlnIleGlyThrP : 153 ||||||:!!|||||| |||:!!||| ! !!.! !! !:!!!!.! !|||..! AlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValG 232803 : GCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCG : 232862 154 : heCysPheCysThrIleLeuGlyValPheLysArgThrIleLysIleGlyAsnAsnSe : 172 !! ! ! ! !:!! !|||:!! !! !!!!|||.!! ! :!:||||||.!.|| lySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSe 232863 : GCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAG : 232919 173 : rMetGluIleTyrValLeuProSerProAlaTyrLysIleProValAspThr<-><-> : 190 | ..!!!:||| !||||||!!! !! !|||! !! ! !:!!|||||| rTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPhe 232920 : TTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTC : 232976 191 : AsnProGlyHisAspIleValLeuCysPheGlnTyrLeuAlaAlaTyrIleThrSerA : 209 !:!||| !:!!!!:|||:!!!!! !.!.|||! !|||:!!!.!!:!|||..!!:!: SerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnS 232977 : AGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACT : 233036 210 : laThrValValSerAlaPheSerPheAlaIleValPheAlaCysHisAlaSerGlyGl : 228 !!..!..!|||.!!|||! !.!!!!.!.! !|||.!.||| ||||||!!!||||| erValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGl 233037 : CCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACA : 233093 229 : nLeuThrIleMetIleIleTrpIleGluGluPheIleAsnArgProGlnGluGluAsn : 247 ||||!.!:!::!!!!: :!:!!:!!:!!.:!::!! ! ! !:!!|||.!. nLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGlyGlnGluGlu 233094 : GCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAGGAGGAG : 233150 248 : LysAsnValHisIleAspLysIleSerValIleIleLysHisHisMetArgIleLeuS : 267 !:! ||| |||:!!.!! !!|||:!::!!||||||:!!|||! !|||! Arg---ValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeuA 233151 : AGA---GTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTAA : 233207 268 : erPheLeu : 269 !!!:!||| rgTyrLeu 233208 : GGTATTTG : 233215 vulgar: AmOr38 17 269 . KQ414889.1 232456 233215 + 401 M 172 516 G 0 6 M 59 177 G 1 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232457 233215 401 + . gene_id 8 ; sequence AmOr38 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232457 233215 . + . KQ414889.1 exonerate:protein2genome:local exon 232457 233215 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 232457 233215 401 + . alignment_id 8 ; Query AmOr38 ; Align 232457 18 516 ; Align 232979 190 177 ; Align 233156 250 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 332 Query range: 300 -> 405 Target range: 277371 -> 277842 301 : GluTrpSerGluHisAsnIleArgIleLeuGlyThrTyrIleIleThrValIleAsnI : 320 |||||||||!!: !:!!:!!!:!! !:!! !|||:!!.!!!!:! !:!!|||::!! GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 321 : leThrLeuAsnThrPheLeuIleCysTyrIleGlyGluValLeuThrGluArg >>> : 338 !: ...||| ||| !:!!|||||||||||||||:!!|||||||||!:! etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 339 : > Target Intron 1 >>>> CysLysGluIleGlyAspMetValTyrMetThrA : 349 72 bp ||||||:!!:!!|||!!::!!||||||||||||| ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 350 : snTrpTyrArgLeuProLysLysAspIleLeuAsnLeuIleMetIleIleThrArgSe : 368 |||||||| !|||||| ! ||||||||||||||||||:!!:!:||||||:!!||||| snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 369 : rSerValGluTyrLysMetThrAlaGlyLysIleIleAspMetSerValIleThrPhe : 387 ||||::: |||:::||||||||||||:::|||...||||||||| !|||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 388 : GlyAsn >>>> Target Intron 2 >>>> IleIleLysThrValPheGlyTy : 397 |||:!! 84 bp :!!|||||||||..!|||...|| GlyAsp++ ++ValIleLysThrThrPheAlaTy 277703 : GGCGATgt.........................agGTAATAAAAACCACTTTCgcgta : 277816 398 : rLeuAsnIleLeuArgGlnThrThr : 405 ||||||||||||||||||||||||| rLeuAsnIleLeuArgGlnThrThr 277817 : tttaaatattctacgCCAAACGACG : 277842 vulgar: AmOr38 300 405 . KQ414889.1 277371 277842 + 332 M 37 111 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277842 332 + . gene_id 9 ; sequence AmOr38 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277842 332 + . alignment_id 9 ; Query AmOr38 ; Align 277372 301 111 ; Align 277555 338 156 ; Align 277795 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 311 Query range: 18 -> 266 Target range: 278576 -> 279338 19 : TyrSerIleGlnPheAsnLysTrpPheSerLysThrIleGlyValTrpProLeuProS : 38 ||||||:!!|||.!.|||:::|||||| !||| !!|||||||||||||||||| ! TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 39 : erSerThrSerLysPheGluLysIleValThrArgIleLeuIleIleValCysSerIl : 57 !!!!..!!!!! !!.||||||||| !:!! !:!!||| :!!:!! !!!!!.! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 58 : eIleThrLeuPheValIleIleProSerMetLeuHisPheIleLeuValLysGlu<-> : 76 !:!:! ! !|||:!!:!::!!|||!!! ||| ! :!:|||! !||| eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 77 : AspIleIleSerLysLeuLysSerLeuGlyProIleSerTyrCysPheGlyGlyGlyL : 95 |||:!! !!!!|||:!!|||! !:!!||||||:!!|||!:!||| !!.! !: AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 96 : euAsnTyrAlaValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleAspHisIl : 114 !!!!.||| !:!!|||:!!! !||| ..! ! ||| !! ! |||:!::!! !!|| leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 115 : eGluThrAspTrpLysVal<-><-><->IleThrArgMetThrAspArgGlnValMet : 130 |...|||||||||...:!! ! ::: :::|||::::::||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 131 : LeuLysAsnAlaLysIleGlyArgIleIleSerCysCysIleValGlyPheLeuGlnI : 150 ! ! !:!|||!:!||||||||| !:!::!! !! !! !!.!||||||:!! ! ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 151 : leGlyThrPheCysPheCysThrIleLeuGlyValPheLys<->ArgThrIleLysIl : 168 !||| ! !!! !!:! !.!!:!::!! !:!!||| ! |||||| ! || erGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIl 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCAT : 279039 169 : eGlyAsnAsnSerMetGluIleTyrValLeuProSerProAlaTyrLysIleProVal : 187 |! !|||.!.!!!:!!..! ! ! !.!!!!|||! ! ! ! ! :!! ! ! eAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 279040 : CGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCG : 279096 188 : AspThrAsnProGlyHisAspIleValLeuCysPheGlnTyrLeuAlaAlaTyrIleT : 207 !|||!:!|||..! !!!:||||||! !! !.!.|||! !|||||||||!:!:!! ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValL 279097 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTT : 279156 208 : hrSerAlaThrValValSerAlaPheSerPheAlaIleValPheAlaCysHisAlaSe : 226 !! !:!!..!..!|||.!!|||! !|||!!. ! !||||||!.! |||!.!!! euTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCy 279157 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTG : 279213 227 : rGlyGlnLeuThrIleMetIleIleTrpIleGluGluPheIleAsnArgProGln<-> : 245 !||||||!!!! !|||:!::!:! ! !:!:!!::!!.!!|||:!! !! !:!! sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLysGly 279214 : TGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGG : 279270 246 : GluGluAsnLysAsnValHisIleAspLysIleSerValIleIleLysHisHisMetA : 264 ..!:!!!:! !!:!..!||| !.!.::!:!:.!!! !||||||:!!||||||:!!! ArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuL 279271 : AGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGA : 279330 265 : rgIleLeu : 266 :!|||||| ysIleLeu 279331 : AGATACTG : 279338 vulgar: AmOr38 18 266 . KQ414889.1 278576 279338 + 311 M 57 171 G 0 3 M 45 135 G 0 9 M 43 129 G 0 3 M 81 243 G 0 3 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 279338 311 + . gene_id 10 ; sequence AmOr38 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278577 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279338 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278577 279338 311 + . alignment_id 10 ; Query AmOr38 ; Align 278577 19 171 ; Align 278751 76 135 ; Align 278895 121 129 ; Align 279027 164 243 ; Align 279273 245 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 303 Query range: 17 -> 266 Target range: 289732 -> 290479 18 : GluTyrSerIleGlnPheAsnLysTrpPheSerLysThrIleGlyValTrpProLeuP : 37 ...|||!!!.!!:!!!!. ! ! |||.!!! !||| !!||||||:!!!::|||!!! ArgTyrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrProPheV 289733 : CGTTACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCG : 289790 38 : ro<->SerSerThrSerLysPheGluLysIleValThrArgIleLeuIleIleValCy : 55 ! ||| !!.!!|||!:! !|||::!! !.!:!! !:!:||||||:!:||||| alPheSerArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLeuValCy 289791 : TCTTTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATG : 289847 56 : sSerIleIleThrLeuPheValIleIleProSerMetLeuHisPheIleLeuValLys : 74 |!!! ||| !! !|||:!!|||:!!|||! !! ! !||| !!:!!!!! ! ! sCysSerIleLeuGlnPheIleIleValProPheSerHisHisValLeuPheSerAsp 289848 : TTGCTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGAC : 289904 75 : GluAspIleIleSerLysLeuLysSerLeuGlyProIleSerTyrCysPheGlyGlyG : 94 .!.|||!!:! !!!! :!!|||!:!|||||||||:!:!!!!:!|||!!. ! ! AsnAspMetAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuThrThrP 289905 : AACGACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGT : 289964 95 : lyLeuAsnTyrAlaValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleAspHi : 113 !!!!!!.|||..! !!!! !:!!!:! :::! ||| !! !|||:!: ! || hePheLysTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysValLysHi 289965 : TCTTCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACA : 290021 114 : sIleGluThrAspTrpLysValIleThrArgMetThrAspArgGlnValMetLeuLys : 132 |||||||! !|||||||||:!!:!: ! ! ! ! !!||| :!!||||||!:! sIleGluArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMetLeuArg 290022 : CATCGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGA : 290078 133 : AsnAlaLysIleGlyArgIleIleSerCysCysIleValGlyPheLeuGlnIleGlyT : 152 !!!.!! !!!:.!!|||! !:!!! ! !!.! !|||||| ! |||||| TyrValThrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyG 290079 : TACGTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTG : 290138 153 : hrPheCysPheCysThrIleLeuGlyValPheLysArgThrIleLysIleGlyAsnAs : 171 !.!.! !!:! !|||:!!:!! !:!!|||..!!:!! !! ! !! !|||||| lyLeuSerTyrAsnThrValIleProLeuPheSerLysLysSerValAsnGlyAsnVa 290139 : GTCTGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGGTAACGT : 290195 172 : nSerMetGluIleTyrValLeuProSerProAlaTyrLysIleProValAspThrAsn : 190 !!!!!:..! ! ..!! !|||.!! !! ! ! .!! !|||.!.! !!:! lThrIleArgProLeuThrTyrProGlyTyrGluGluPhePheAspValGlnLysSer 290196 : GACTATCAGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGT : 290252 191 : ProGlyHisAspIleValLeuCysPheGlnTyrLeuAlaAlaTyrIleThrSerAlaT : 210 |||!.!:!!!!:||||||!!!|||.!.!!.! !:!! !!.! ||||||:!! !! ProAlaTyrGluIleValPheCysMetHisCysValTyrValMetIleThrAlaAsnI 290253 : CCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACA : 290312 211 : hrValValSerAlaPheSerPheAlaIleValPheAlaCysHisAlaSerGlyGlnLe : 229 !..!:!!:!!|||!:!|||!!..!!! :!!|||||| !|||.!!!!!||||||:! leThrMetAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGlnIl 290313 : TCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGAT : 290369 230 : uThrIleMetIleIleTrpIleGluGluPheIleAsnArgProGlnGluGluAsnLys : 248 !! !|||...! ! !!:!:|||!!:.!.! !!!.||| !..! ! !.!.||| eLysIleGlnThrThrArgLeuGluAspLeuThrLysArgGlyMetLeuLeuGluLys 290370 : TAAGATACAAACGACGCGGCTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAGAAG : 290426 249 : AsnValHisIleAspLysIleSerValIleIleLysHisHisMetArgIleLeu : 266 ...||| ! |||::::!::!!|||:!!:!:!.. !|||:!!..!|||||| GlyValSer---AspArgLeuAlaValValValSerGlyHisValGluIleLeu 290427 : GGAGTGAGT---GATCGTTTGGCGGTTGTTGTGAGCGGTCACGTGGAGATCTTG : 290479 vulgar: AmOr38 17 266 . KQ414889.1 289732 290479 + 303 M 20 60 G 0 3 M 214 642 G 1 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289733 290479 303 + . gene_id 11 ; sequence AmOr38 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289733 290479 . + . KQ414889.1 exonerate:protein2genome:local exon 289733 290479 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 289733 290479 303 + . alignment_id 11 ; Query AmOr38 ; Align 289733 18 60 ; Align 289796 38 642 ; Align 290438 253 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 285 Query range: 7 -> 266 Target range: 226897 -> 227677 8 : ThrValGlnLysGluPheAsnAsnLeuAsnGluTyrSerIleGlnPheAsnLysTrpP : 27 .!!..!:!!!!.!!:!:!.!..!.! ! .!. |||||||||!!.|||:::|||. AlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpL 226898 : GCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGC : 226955 28 : heSerLysThrIleGlyValTrpProLeuProSerSerThrSerLysPheGluLysIl : 46 !.! !||| !!:!!|||:!!||||||! ! !! !!!.!!:!|||::!.!.! !!:! euLeuLysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCy 226956 : TGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATG : 227012 47 : eValThrArgIleLeuIleIleValCysSerIleIleThrLeuPheValIleIlePro : 65 ! !!:!! !!:!::!! !.!!:!!|||! ! :!:! ! !|||! !:!::!! !! sPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSer 227013 : TTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCG : 227069 66 : SerMetLeuHisPheIleLeuValLysGluAspIleIleSerLysLeuLysSerLeuG : 85 ||| |||:!! ! :!!|||! ! !:!!! ! ! !!:!! !||||||! !:!!| SerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleG 227070 : AGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCG : 227129 86 : lyProIleSerTyrCysPheGlyGlyGlyLeuAsnTyrAlaValLeuLeuLeuArgLy : 104 |||||!!:|||!:!! ! !..! !|||!!.|||:!!:!!||| !!!!!.!:! lyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGl 227130 : GTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGA : 227186 105 : sAsnAspIleArgTyrCysIleAspHisIleGluThrAspTrpLysValIleThrArg : 123 !:!!||||||! ! ! |||:!!!!:!..|||:!! !||||||||| !|||! ! ! uAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyr 227187 : GGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATAC : 227243 124 : MetThrAspArgGlnValMetLeuLysAsnAlaLysIleGlyArg<-><->IleIleS : 141 :!! !||||||.!.||||||:!!! ! !!||| ! !|||||| |||! !! LeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrI 227244 : CTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTA : 227303 142 : erCysCysIleValGlyPheLeuGlnIleGlyThrPheCysPheCysThrIleLeuGl : 160 !||| .!! !!! !||| ...... ||| .!! !..! !:!!.. leCysThrPhePheValPheSerSerPheValPhePheTyrIleValValProIleAs 227304 : TTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAA : 227360 161 : yValPheLysArgThrIleLysIleGlyAsnAsnSerMetGluIleTyrValLeuPro : 179 !!.! !.. !.!!! :!! !||||||:!!||| !!!!||| nAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPhePro 227361 : CGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCG : 227417 180 : SerProAlaTyrLysIleProValAspThrAsnProGlyHisAspIleValLeuCysP : 199 ! !||| ! !! ! !||| ! !!:!||| !:!!!!:||| !!!!!! PheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerV 227418 : TTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGG : 227477 200 : heGlnTyrLeuAlaAlaTyrIleThrSerAlaThrValValSerAlaPheSerPheAl : 218 ! |||!:!:!!.!!!.! !:!: ! !!.!..!..! !:!!|||! !|||.!.|| alGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAl 227478 : TACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGC : 227534 219 : aIleValPheAlaCysHisAlaSerGlyGlnLeuThrIleMetIleIleTrpIleGlu : 237 | !:!!.!!||| !||||||!!!||||||:!! !:!::!!:!: !|||:!:! ! aAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGly 227535 : AGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGA : 227591 238 : GluPheIleAsnArgProGlnGluGluAsnLysAsnValHisIleAspLysIleSerV : 257 .!.!!.|||:!! !! ! !!!: !!:!|||!..:!! !! |||!:!|||:!! HisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAsp---AspArgIleAlaS 227592 : CATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGAT---GATAGAATCGCTA : 227648 258 : alIleIleLysHisHisMetArgIleLeu : 266 !|||:!!! ||||||:!:||||||||| erIleValThrHisHisValArgIleLeu 227649 : GCATCGTCACTCACCACGTTCGAATATTG : 227677 vulgar: AmOr38 7 266 . KQ414889.1 226897 227677 + 285 M 131 393 G 0 6 M 113 339 G 1 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226898 227677 285 + . gene_id 12 ; sequence AmOr38 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226898 227677 . + . KQ414889.1 exonerate:protein2genome:local exon 226898 227677 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226898 227677 285 + . alignment_id 12 ; Query AmOr38 ; Align 226898 8 393 ; Align 227297 139 339 ; Align 227636 253 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 255 Query range: 300 -> 393 Target range: 254071 -> 254442 301 : GluTrpSerGluHisAsnIleArgIleLeuGlyThrTyrIleIleThrValIleAsnI : 320 ||||||!!!||| !:!! !!:!!!:||| !|||||||||:!!|||:!!:!! !: GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaV 254072 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTG : 254129 321 : leThrLeuAsnThrPheLeuIleCysTyrIleGlyGluValLeuThrGluArg >>> : 338 !!..! ||||||||||||||||||||||||.!!!!: !|||||||||!:! alValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 254130 : TTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt... : 254185 339 : > Target Intron 1 >>>> CysLysGluIleGlyAspMetValTyrMetThrA : 349 92 bp ||| !:!!:!!|||!!::!!||||||||||||: ++CysLeuLysValGlyGluValValTyrMetThrA 254186 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 254308 350 : snTrpTyrArgLeuProLysLysAspIleLeuAsnLeuIleMetIleIleThrArgSe : 368 !!|||||| !||||||:!!!:! ||||||:!!||||||:!!|||||||||||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSe 254309 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATC : 254365 369 : rSerValGluTyrLysMetThrAlaGlyLysIleIleAspMetSerValIleThrPhe : 387 |!:!|||! !:!!!!:|||||||||||||||... ||||||:!! !|||||| rAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPhe 254366 : GAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTC : 254422 388 : GlyAsnIleIleLysThr : 393 |||:!!:!!! !:!!||| GlyAspValSerGluThr 254423 : GGCGATGTAAGTGAAACT : 254442 vulgar: AmOr38 300 393 . KQ414889.1 254071 254442 + 255 M 37 111 5 0 2 I 0 88 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254072 254442 255 + . gene_id 13 ; sequence AmOr38 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254072 254182 . + . KQ414889.1 exonerate:protein2genome:local exon 254072 254182 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254183 254184 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254183 254274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254273 254274 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254275 254442 . + . KQ414889.1 exonerate:protein2genome:local exon 254275 254442 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254072 254442 255 + . alignment_id 13 ; Query AmOr38 ; Align 254072 301 111 ; Align 254275 338 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 248 Query range: 300 -> 393 Target range: 238411 -> 238796 301 : GluTrpSerGluHisAsnIleArgIleLeuGlyThrTyrIleIleThrValIleAsnI : 320 ||||||:!!||| !:!! !!:!|||||| !||||||.!!:!!.!!:!!:!! !| GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheValAlaLeuValAlaI 238412 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTGTAGCACTCGTTGCTA : 238469 321 : leThrLeuAsnThrPheLeuIleCysTyrIleGlyGluValLeuThrGluArg >>> : 338 ||..!! !|||||||||:!!:!!|||||||||.!!||| !|||||||||!:! leValSerAsnThrPheIleLeuCysTyrIleSerGluArgLeuThrGluGln++ 238470 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGAAAGGCTGACAGAACAGgt... : 238525 339 : > Target Intron 1 >>>> CysLysGluIleGlyAspMetValTyrMetThrA : 349 106 bp ||| !:!!:!!|||!!::!!||||||||||||: ++CysLeuLysValGlyGluValValTyrMetThrA 238526 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 238662 350 : snTrpTyrArgLeuProLysLysAspIleLeuAsnLeuIleMetIleIleThrArgSe : 368 !!|||||| !||||||:!!!:! ||||||:!!||||||:!!||||||! !||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSe 238663 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATC : 238719 369 : rSerValGluTyrLysMetThrAlaGlyLysIleIleAspMetSerValIleThrPhe : 387 |!:!|||! !|||:!:||||||||||||:!!:!! !!||||||:!! !|||||| rAsnValValValLysValThrAlaGlyLysValLeuHisMetSerLeuTyrThrPhe 238720 : GAACGTGGTCGTTAAAGTCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTC : 238776 388 : GlyAsnIleIleLysThr : 393 |||:!!:!!! !:!!||| GlyAspValSerGluThr 238777 : GGCGATGTAAGTGAAACT : 238796 vulgar: AmOr38 300 393 . KQ414889.1 238411 238796 + 248 M 37 111 5 0 2 I 0 102 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238412 238796 248 + . gene_id 14 ; sequence AmOr38 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 238412 238522 . + . KQ414889.1 exonerate:protein2genome:local exon 238412 238522 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238523 238524 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238523 238628 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 238627 238628 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238629 238796 . + . KQ414889.1 exonerate:protein2genome:local exon 238629 238796 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238412 238796 248 + . alignment_id 14 ; Query AmOr38 ; Align 238412 301 111 ; Align 238629 338 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 224 Query range: 286 -> 405 Target range: 261691 -> 262201 287 : AsnIleLeuSerIleCysLeuPheSerTyrCysIleLeuAlaGluTrpSerGluHisA : 306 ||| !:!!! !|||! !!!. ::: :::||| ||||||:!!|||!!.: AsnCysValIleIlePhePhe***TyrPhePheLeuLeuGlnGluTrpAlaGluGlnA 261692 : AATTGTGTAATAATCTTTTTctgatatttctttcttttgcagGAATGGGCTGAGCAAG : 261749 307 : snIleArgIleLeuGlyThrTyrIleIleThrValIleAsnIleThrLeuAsnThrPh : 325 !!|||!:!! !|||..!||||||.!!!!:! !:!!||| ||| !!!!|||..!|| spIleGlnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPh 261750 : ATATACAAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATT : 261806 326 : eLeuIleCysTyrIleGlyGluValLeuThrGluArg >>>> Target Intron : 338 |:!!||||||||||||||||||:!!|||||||||!:! 81 bp eIleIleCysTyrIleGlyGluIleLeuThrGluGln++ 261807 : TATAATCTGTTACATCGGTGAAATACTAACGGAACAGgt................... : 261847 339 : 1 >>>> CysLysGluIleGlyAspMetValTyrMetThrAsnTrpTyrArgLeuPr : 354 |||..!:!!:!!||||||:!:||||||||||||||||||||| !||||| ++CysSerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuPr 261848 : ......agTGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACC : 261974 355 : oLysLysAspIleLeuAsnLeuIleMetIleIleThrArg-SerSerValGluTyrLy : 373 | ! |||..!||||||:!!||||||:!!||||||.!!|||#!:! !! !||| !!. oAspLysSerIleLeuAspLeuIleLeuIleIleAlaArg#AsnArgArgGluIleSe 261975 : TGATAAAAGTATCCTTGATTTGATTTTGATCATTGCACGAAAACCGCCGGGAAATTAG : 262032 374 : sMetThrAlaGlyLysIleIleAspMet{S} >>>> Target Intron 2 >>>> : 383 . !.!!.!||| ! !:!! {|} 71 bp rSerAsnValGlyLeuHisValArgArg{S}++ 262033 : TTCAAATGTCGGTTTACACGTTCGGCGA{T}gt......................... : 262065 384 : {er}ValIleThrPheGlyAsnIleIleLysThrValPheGlyTyrLeuAsnIleL : 401 {||} ! !.!. !.!.:!::!!||||||!.!|||!.!|||||||||:!:| +-{er}SerProLeuIlePheGlnValValLysThrAlaPheAlaTyrLeuAsnLeuL 262066 : ac{CA}AGTCCGTTGATATTCCAGGTGGTTAAAACTGCTTTCGCGTATCTGAATCTGT : 262187 402 : euArgGlnThrThr : 405 ||||||||! !||| euArgGlnMetThr 262188 : TGCGTCAAATGACG : 262201 vulgar: AmOr38 286 405 . KQ414889.1 261691 262201 + 224 M 51 153 5 0 2 I 0 77 3 0 2 M 30 90 F 0 1 M 15 45 S 0 1 5 0 2 I 0 67 3 0 2 S 1 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261692 262201 224 + . gene_id 15 ; sequence AmOr38 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 261692 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261692 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262062 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262062 . + . insertions 0 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local splice5 262063 262064 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 262063 262133 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 262132 262133 . + . intron_id 1 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 262134 262201 . + . KQ414889.1 exonerate:protein2genome:local exon 262134 262201 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 261692 262201 224 + . alignment_id 15 ; Query AmOr38 ; Align 261692 287 153 ; Align 261926 338 90 ; Align 262017 368 45 ; Align 262136 384 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 222 Query range: 278 -> 390 Target range: 280025 -> 280435 279 : IleCysPheMetGluMetPheLysAsnIleLeuSerIleCysLeuPheSerTyrCysI : 298 :!!|||!:!.!..!.!!: ! ! ! ! !:!!:!!.!! !:!!!:!|||! ! : LeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerLeuSerV 280026 : TTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGTTGTCAG : 280083 299 : leLeuAlaGluTrpSerGluHisAsnIleArgIleLeuGlyThrTyrIleIleThrVa : 317 !!!!! !||||||..!:!!:!!:!! !! ! ! ! !||||||:!!!!: !:! alPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLe 280084 : TTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCT : 280140 318 : lIleAsnIleThrLeuAsnThrPheLeuIleCysTyrIleGlyGluValLeuThrGlu : 336 !|||::!:!!|||!!!|||..!|||:!!:!!|||||||||||||||:!!|||:!!||| uIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGlu 280141 : CATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAA : 280197 337 : Arg >>>> Target Intron 1 >>>> CysLysGluIleGlyAspMetValTy : 346 !:: 74 bp ||| !:!!:!!|||! ..!|| Gln++ ++CysLeuLysValGlyValSerThrTy 280198 : Caggt.........................agTGCTTAAAAGTCGGCGTGTCAACTTA : 280301 347 : rMetThrAsnTrpTyrArgLeuProLysLysAspIleLeuAsnLeuIleMetIleIle : 365 ||||! !:!!||||||||||||||| !||| ! !! !..!||||||:!!|||.!! rMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePhe 280302 : CATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTC : 280358 366 : ThrArgSerSerValGluTyrLysMetThrAlaGlyLysIleIleAspMetSerValI : 385 .!! !|||!:! !... |||:!:|||||||||||||||||||||:!:|||:!!! AlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuS 280359 : GCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAA : 280418 386 : leThrPheGlyAsnIle : 390 !!:!||| !!!:!:!: erSerPheCysSerVal 280419 : GCAGCTTCTGCAGCGTG : 280435 vulgar: AmOr38 278 390 . KQ414889.1 280025 280435 + 222 M 59 177 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280026 280435 222 + . gene_id 16 ; sequence AmOr38 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280026 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280026 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280435 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280435 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280026 280435 222 + . alignment_id 16 ; Query AmOr38 ; Align 280026 279 177 ; Align 280277 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 221 Query range: 19 -> 188 Target range: 294690 -> 295197 20 : SerIleGlnPheAsnLysTrpPheSerLysThrIleGlyValTrpProLeu<->ProS : 38 |||:!!:!!!:! !::! !!.!.! !||| !!||||||:!!||||||||| !| SerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrS 294691 : AGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACA : 294748 39 : erSerThrSerLysPheGluLysIleValThrArgIleLeuIleIleValCysSerIl : 57 || !|||||||||.!..!.|||:!!:!!:!!! !||||||||| !|||!!!:! erHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLe 294749 : GTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTT : 294805 58 : eIleThrLeuPheValIleIleProSerMetLeuHisPheIleLeuValLysGluAsp : 76 :! !..!|||||||||:!!:!:|||!!! ! ! !! !:!!!!! ! :::::: uThrValLeuPheValLeuValProCysGlyTyrPheCysValPheHisValLysAsn 294806 : GACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaac : 294862 77 : IleIleSerLysLeuLysSerLeuGlyProIleSerTyrCysPheGlyGlyGlyLeuA : 96 ::: |||:!!||| !|||||||||:!! !|||! !.!. !..! !|||! ValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuA 294863 : gtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCA : 294922 97 : snTyrAlaValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleAspHisIleGl : 115 ..|||::! !|||:!!|||!:!! ! !! .!!!:!:!!||||||!!: !!||||| rgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCysIleGluAspIleGl 294923 : GGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGA : 294979 116 : uThrAspTrpLysValIleThrArgMetThrAspArgGlnValMetLeuLysAsnAla : 134 |!.!|||||||||:!!||| !!.! ! ! !!||| !:!!|||:!!||||||||| uAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIleMetIleLysAsnAla 294980 : GAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCG : 295036 135 : LysIleGlyArgIleIleSerCysCysIleValGlyPheLeuGlnIleGlyThrPheC : 154 ! !:!! !!:!! !!:!!! !..!.!!..! !.!.:!! ! ! !..!.!! ! ! MetValThrGlnArgMetThrValAlaPheThrIleIleIleTyrSerSerAlaValS 295037 : ATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGT : 295096 155 : ysPheCysThrIleLeuGlyValPheLysArgThrIleLysIleGlyAsnAsnSerMe : 173 !:! !.!!|||::: |||.........:!::!!! ! !!!.|||!:! erTyrHisAlaIleValProPhePheSerAsnAlaLeuGluAsnLysLysAsnAsn-- 295097 : CGTATCACGCCATTGtgccatttttttcaaacgctTTGGAGAACAAGAAGAATAAT-- : 295153 174 : tGluIleTyrValLeuProSerProAlaTyrLysIleProValAsp : 188 !||| !!.!||||||! !|||!.!|||:!!:!! !|||||| -ThrIleArgAlaLeuProIleProGlyTyrGluLeuPheValAsp 295154 : -ACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGAC : 295197 vulgar: AmOr38 19 188 . KQ414889.1 294690 295197 + 221 M 17 51 G 0 3 M 136 408 G 1 0 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294691 295197 221 + . gene_id 17 ; sequence AmOr38 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294691 295197 . + . KQ414889.1 exonerate:protein2genome:local exon 294691 295197 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294691 295197 221 + . alignment_id 17 ; Query AmOr38 ; Align 294691 20 51 ; Align 294745 37 408 ; Align 295153 174 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 220 Query range: 300 -> 401 Target range: 305100 -> 305816 301 : GluTrpSerGluHisAsnIleArgIleLeuGlyThrTyrIleIleThrValIleAsnI : 320 !!:|||..!... !|||! ! !! !||| !||||||! !:!: !:!!|||::!: AspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValLeuLeuIleSerV 305101 : GATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGTTACTGATATCTG : 305158 321 : leThrLeuAsnThrPheLeuIleCysTyrIleGlyGluValLeuThrGluArg >>> : 338 !!|||!!!|||! !|||:!!:!!|||||||||||||||:!!|||! !|||!:! alThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMetGluLys++ 305159 : TAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTATGGAAAAGgt... : 305214 339 : > Target Intron 1 >>>> CysLysGluIleGlyAspMetValTyrMetThrA : 349 413 bp !!!.....:!!||| !!:!|||! !! ++SerSerSerValGlyLeuSerCysPheMetIleS 305215 : ......................agAGCAGTAGCGTTGGATTATCCTGTTTTATGATCA : 305658 350 : snTrpTyrArgLeuProLysLysAspIleLeuAsnLeuIleMetIleIleThrArgSe : 368 :!||||||!.!||||||! ||| |||! !..!||||||:!:||||||.!!! !|| erTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleLeuIleIleAlaMetSe 305659 : GTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTTTAATCATTGCCATGTC : 305715 369 : rSerValGluTyrLysMetThrAlaGlyLysIleIleAspMetSerValIleThrPhe : 387 |||| ! ! !|||!!:!:!|||||||||:!!:!!|||:!:|||:!! !|||||| rSerAsnProAlaLysIleSerAlaGlyLysValValAspLeuSerLeuSerThrPhe 305716 : AAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTATCTTTATCCACATTT : 305772 388 : GlyAsnIleIleLysThrValPheGlyTyrLeuAsnIleLeu : 401 ||||||:!:! ! ! ! :::... ::::::|||::: GlyAsnValSerTyrTyrGlnTyrSerAsnIleSerIleVal 305773 : GGAAACGTGAGTTACTATcaatattccaatatttcaattgtt : 305816 vulgar: AmOr38 300 401 . KQ414889.1 305100 305816 + 220 M 37 111 5 0 2 I 0 409 3 0 2 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305101 305816 220 + . gene_id 18 ; sequence AmOr38 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305816 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305816 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305101 305816 220 + . alignment_id 18 ; Query AmOr38 ; Align 305101 301 111 ; Align 305625 338 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 212 Query range: 309 -> 390 Target range: 234830 -> 235147 310 : LeuGlyThrTyrIleIleThrValIleAsnIleThrLeuAsnThrPheLeuIleCysT : 329 |||..!:!!|||:!!|||..! !:!:::!!!:|||!!.||| |||:::...|||| LeuAlaSerTyrValIleValTyrValSerMetThrPheAsnIlePheIlePheCysT 234831 : ttagCTTCATACGTCATCGTGTACGTGTCCATGACATTtaatatattcatattttgtt : 234888 330 : yrIleGlyGluValLeuThrGluArgCysLysGlu{I} >>>> Target Intron : 341 |||||||||||..!|||||||||!:! !..!{.} 74 bp yrIleGlyGluThrLeuThrGluGlnValGlySer{P}+- 234889 : ACATCGGAGAGACGCTTACAGAGCAGGTAGGATCA{T}ga.................. : 234927 342 : 1 >>>> {le}GlyAspMetValTyrMetThrAsnTrpTyrArgLeuProLysLys : 356 {!!}|||!!:! ||||||||||||.!.||||||||||||||| ! ||| ++{he}GlyGluLysValTyrMetThrGluTrpTyrArgLeuProHisLys 234928 : .......ag{TC}GGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATAAA : 235043 357 : AspIleLeuAsnLeuIleMetIleIleThrArgSerSerValGluTyrLysMetThrA : 376 ! !|||..!|||:!!|||||||||:!!|||||||||:!!! ! |||!!:|||| ThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrA 235044 : ACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCACCG : 235103 377 : laGlyLysIleIleAspMetSerValIleThrPheGlyAsnIle : 390 ||||||||.!!:!!.!.||||||||| !|||||||||:!!:!: laGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235104 : CTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: AmOr38 309 390 . KQ414889.1 234830 235147 + 212 M 31 93 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234831 235147 212 + . gene_id 19 ; sequence AmOr38 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234831 234924 . + . KQ414889.1 exonerate:protein2genome:local exon 234831 234924 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234925 234926 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 234925 234998 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234997 234998 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234999 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234999 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234831 235147 212 + . alignment_id 19 ; Query AmOr38 ; Align 234831 310 93 ; Align 235001 342 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 194 Query range: 328 -> 395 Target range: 272990 -> 273191 329 : TyrIleGlyGluValLeuThrGluArgCysLysGluIleGlyAspMetValTyrMetT : 348 |||::: ::: ::: :::||||||:::||||||!!::!:|||||||||| TyrLeuProLysLysAsnSer***GlnCysLysLysIleGlyGluValValTyrMetT 272991 : TACttaccgaagaaaaattcttaacagtgtaaaaaaattggcGAGGTAGTTTACATGA : 273048 349 : hrAsnTrpTyrArgLeuProLysLysAspIleLeuAsnLeuIleMetIleIleThrAr : 367 ||||||||||| !|||||| ||||||||||||:!!||||||:!!||||||:!!|| hrAsnTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerAr 273049 : CGAACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAG : 273105 368 : gSerSerValGluTyrLysMetThrAlaGlyLysIleIleAspMetSerValIleThr : 386 |!!!||||||! ! !|||!!:|||||||||!:!|||:!! !||||||||| !||| gCysSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThr 273106 : ATGCAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACG : 273162 387 : PheGlyAsnIleIleLysThrValPhe : 395 ||||||:!!:!! ... :::||| PheGlyAspValArgSerGlnLeuPhe 273163 : TTCGGCGATGTACgttctcaattattt : 273191 vulgar: AmOr38 328 395 . KQ414889.1 272990 273191 + 194 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272991 273191 194 + . gene_id 20 ; sequence AmOr38 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272991 273191 . + . KQ414889.1 exonerate:protein2genome:local exon 272991 273191 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272991 273191 194 + . alignment_id 20 ; Query AmOr38 ; Align 272991 329 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 185 Query range: 300 -> 403 Target range: 206050 -> 207601 301 : GluTrpSerGluHisAsnIleArgIleLeuGlyThrTyrIleIleThrValIleAsnI : 320 ||||||..!.!.:!!|||! !! ! :!! !..!||||||! ! !|||::! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 321 : leThrLeuAsnThrPheLeuIleCysTyrIleGlyGluValLeuThrGluArg >>> : 338 !|||!!! !..!|||:!!:!!||||||||||||:!!:!!|||! !!!:!:! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 339 : > Target Intron 1 >>>> CysLysGluIleGlyAspMetValTyrMetThrA : 349 81 bp ! ! ! :!:||| ! !! !! !..!| ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 350 : snTrpTyrArgLeuProLysLysAspIleLeuAsnLeuIleMetIleIleThrArgSe : 368 |||||||||||||||||!!.!:! !! ! !::!:!!|||:!!||||||.!!! !|| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 369 : rSerValGluTyrLysMetThrAlaGlyLysIleIleAspMetSerValIleThrPhe : 387 |!:! ! ! |||:!:||||||||||||!!:.!!!!:||||||:!! !!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 388 : GlyAsn >>>> Target Intron 2 >>>> IleIleLysThrValPheGlyTy : 397 !:!! 1161 bp :!!!!:|||..!!.!.!.||||| ThrAsp++ ++ValMetLysValAlaMetGlyTy 206391 : ACCGATgt.........................agGTAATGAAGGTGGCGATGGGATA : 207581 398 : rLeuAsnIleLeuArgGln : 403 |!!!||||||||||||:!! rPheAsnIleLeuArgGlu 207582 : CTTCAACATACTCCGTGAA : 207601 vulgar: AmOr38 300 403 . KQ414889.1 206050 207601 + 185 M 37 111 5 0 2 I 0 77 3 0 2 M 52 156 5 0 2 I 0 1157 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 207601 185 + . gene_id 21 ; sequence AmOr38 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206398 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206398 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206399 206400 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206399 207559 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 207558 207559 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 207560 207601 . + . KQ414889.1 exonerate:protein2genome:local exon 207560 207601 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 207601 185 + . alignment_id 21 ; Query AmOr38 ; Align 206051 301 111 ; Align 206243 338 156 ; Align 207560 390 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 176 Query range: 278 -> 390 Target range: 301620 -> 302036 279 : IleCysPheMetGluMetPheLysAsnIleLeuSerIleCysLeuPheSerTyrCysI : 298 :!!||| ::: |||::::::! !|||!:! ! !!!!!. !! ! LeuCysAlaValIleLysPheGluSerThrLeuAsnAlaLysPheLeuArgValIle* 301621 : CTCTGCgctgtaattaaatttgaatctACTTTAAATGCAAAGTTTTTACGAGTAATTT : 301678 299 : leLeuAlaGluTrpSerGluHisAsnIleArgIleLeuGlyThrTyrIleIleThrVa : 317 !!!! !||||||..!.!. !:!!! ! ! !:!! !|||!:!.!!! ! !:! **Phe***GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLe 301679 : GATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTT : 301735 318 : lIleAsnIleThrLeuAsnThrPheLeuIleCysTyrIleGlyGluValLeuThrGlu : 336 !! :::.!!|||!!!|||! !|||:!!.!!|||||||||||||||:!!|||:!!||| uThrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGlu 301736 : AACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAA : 301792 337 : Arg >>>> Target Intron 1 >>>> CysLysGluIleGlyAspMetValTy : 346 !:! 80 bp |||!..:!!||||||... !|| Gln++ ++CysSerGlnIleGlySerAlaSerTy 301793 : CAGgt.........................agTGTAGCCAAATTGGTTCAGCATCGTA : 301902 347 : rMetThrAsnTrpTyrArgLeuProLysLysAspIleLeuAsnLeuIleMetIleIle : 365 | !! !:!!||||||!.!|||||| !||| !! !:!!||||||:!::!!! ! rGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSer 301903 : CGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGC : 301959 366 : ThrArgSerSerValGluTyrLysMetThrAlaGlyLysIleIleAspMetSerValI : 385 ..!! !|||..! ! ! |||:!:|||||||||||||||||||||:!:|||:!!! ValIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuA 301960 : GTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGA : 302019 386 : leThrPheGlyAsnIle : 390 !||||||.!!::!:!! snThrPheSerSerVal 302020 : ATACATTCAGCTCTGTA : 302036 vulgar: AmOr38 278 390 . KQ414889.1 301620 302036 + 176 M 59 177 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301621 302036 176 + . gene_id 22 ; sequence AmOr38 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301621 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301621 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301621 302036 176 + . alignment_id 22 ; Query AmOr38 ; Align 301621 279 177 ; Align 301878 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 335 -> 395 Target range: 283273 -> 283453 336 : GluArgCysLysGluIleGlyAspMetValTyrMetThrAsnTrpTyrArgLeuProL : 355 ..!!:!||||||:!!:!!|||!!::!!|||||||||||||||! !!:! !|||||| ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 356 : ysLysAspIleLeuAsnLeuIleMetIleIleThrArgSerSerValGluTyrLysMe : 374 ! ||||||||||||||||||:!!:!:||||||:!!|||||||||::: |||:: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 375 : tThrAlaGlyLysIleIleAspMetSerValIleThrPheGlyAsnIleIleLysThr : 393 :||||||...|||:::|||...||||||!.! !||||||! !:!!:!! !..! ! eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspValArgSerLeu 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTACGTTCACTT : 283445 394 : ValPhe : 395 :!!||| LeuPhe 283446 : CTTTTT : 283453 vulgar: AmOr38 335 395 . KQ414889.1 283273 283453 + 166 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283453 166 + . gene_id 23 ; sequence AmOr38 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283453 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283453 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283453 166 + . alignment_id 23 ; Query AmOr38 ; Align 283274 336 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 336 -> 393 Target range: 244655 -> 244826 337 : ArgCysLysGluIleGlyAspMetValTyrMetThrAsnTrpTyrArgLeuProLysL : 356 !:!||| !:!!:!!|||!!::!!||||||||||||:!!|||||| !||||||:!!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 357 : ysAspIleLeuAsnLeuIleMetIleIleThrArgSerSerValGluTyrLysMetTh : 375 :! ||||||:!!||||||:!!||||||! !||||||!:!:!!! !:!!!!:|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 376 : rAlaGlyLysIleIleAspMetSerValIleThrPheGlyAsnIleIleLysThr : 393 ||||||||||:!!:!! !!||||||:!! !|||||||||:!!:!!! !:!!||| rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThr 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 244826 vulgar: AmOr38 336 393 . KQ414889.1 244655 244826 + 165 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244826 165 + . gene_id 24 ; sequence AmOr38 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244826 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244826 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244826 165 + . alignment_id 24 ; Query AmOr38 ; Align 244656 337 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 11 -> 117 Target range: 299668 -> 299989 12 : GluPheAsnAsnLeuAsnGluTyrSerIleGlnPheAsnLysTrpPheSerLysThrI : 31 .!.!:!.!.||| !! .!.|||!!!:!:|||.!. !:!!|||!!.! !||| !!| HisTyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProI 299669 : CATTACCAAAATGACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTA : 299726 32 : leGlyValTrpPro<->LeuProSerSerThrSerLysPheGluLysIleValThrAr : 49 |||||||||||! ! ||| !..! !!:!!||||||.!.||| ! :!!|||:!!! leGlyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuValSerIl 299727 : TCGGAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGAT : 299783 50 : gIleLeuIleIleValCysSerIleIleThrLeuPheValIleIleProSerMetLeu : 68 !:!!|||!!:! !:!!|||! ! !! ! !!!!|||:!!:!!:!:|||||| ! ! eValLeuMetThrIleCysPheSerSerLeuPhePheIleValLeuProSerGlyHis 299784 : CGTTCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCAT : 299840 69 : HisPheIleLeuValLysGluAspIleIleSerLysLeuLysSerLeuGlyProIleS : 88 :!!.!!.!!!!!!.!:!!:!!..!||| ! !|||:!!||| !!!!||||||:!!. TyrIlePhePheAlaGluLysSerIleHisValLysValLysValPheGlyProValG 299841 : TACATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTG : 299900 89 : erTyrCysPheGlyGlyGlyLeuAsnTyrAlaValLeuLeuLeuArgLysAsnAspIl : 107 !!!:!|||.!!..!..! !:!!!!.|||..! !|||! !|||!.! ..!! .! lyPheCysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPh 299901 : GTTTTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTT : 299957 108 : eArgTyrCysIleAspHisIleGluThrAsp : 117 !..! ||||||.!.|||:!!|||! !||| eGluArgCysIleGlnHisValGluArgAsp 299958 : CGAACGATGCATCCAACACGTCGAGAGAGAC : 299989 vulgar: AmOr38 11 117 . KQ414889.1 299668 299989 + 162 M 24 72 G 0 3 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299669 299989 162 + . gene_id 25 ; sequence AmOr38 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299669 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299669 299989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299669 299989 162 + . alignment_id 25 ; Query AmOr38 ; Align 299669 12 72 ; Align 299744 36 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 16 -> 227 Target range: 194165 -> 194795 17 : AsnGluTyrSerIleGlnPheAsnLysTrpPheSerLysThrIleGlyValTrpProL : 36 !.!||||||:!!:!!!:! ! ||| !.!! !! ! !!||||||:!!|||||| ThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProA 194166 : ACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAA : 194223 37 : euProSerSerThrSerLysPheGluLysIleValThrArgIleLeuIleIleValCy : 55 ! !..!||| ! !! ! ! ::!:!: !!.!!!:!! ! !:!::!! !!.. rgGluAspSerLeuArgAspArgValArgLeuPheAlaGlnThrGlyValValPheAl 194224 : GGGAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTTCGC : 194280 56 : sSerIleIleThrLeuPheValIleIleProSerMetLeuHisPheIleLeuValLys : 74 ! :!:! !! !|||:!!:!::!!||| !:!!:!!:!! ! !!!!! ! a------LeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCys 194281 : T------TTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGC : 194331 75 : GluAspIleIleSerLysLeuLysSerLeuGlyProIleSerTyrCysPheGlyGlyG : 94 ||||||:!:! !!! ! :!!||| !:!!!.! !! ! !!:! !!.!. !!.! GluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaI 194332 : GAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGA : 194391 95 : lyLeuAsnTyrAlaValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleAspHi : 113 !:!!!!.!:! !..!:!!:!!:!!!.!!:!!!.!!:||||||!:!|||:!: .! leIleLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGl 194392 : TCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGA : 194448 114 : sIleGluThrAspTrpLysValIleThrArgMetThrAspArgGlnValMetLeuLys : 132 .!!:||||||.!.!::!:!! !:!: ! !! ! !||||||||||||||| !!!. uMetGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsn 194449 : GATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAAT : 194505 133 : AsnAlaLysIleGlyArgIleIleSerCysCysIleValGlyPheLeuGlnIleGlyT : 152 !|||||||||||||||.!!.!!!!! ! !:!!|||.!!! ! ! !|||. CysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyA 194506 : TGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCG : 194565 153 : hrPheCysPheCysThrIleLeuGlyValPheLysArgThrIleLysIleGlyAsnAs : 171 !!!!. !:! !! !|||||| !:!!.!...!..!! !||| ! ! !:!!|| laLeuProTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGluAspAs 194566 : CTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAA : 194622 172 : nSerMetGluIleTyrValLeuProSerProAlaTyrLys<->IleProValAspThr : 189 ||||! :!!||| !:!!! ! !! ! ! !||| .!! !!:!!!!: ! nSerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAsp 194623 : CAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGAC : 194679 190 : AsnProGlyHisAspIleValLeuCysPheGlnTyrLeuAlaAlaTyrIleThrSerA : 209 :::||| !:!!!!:|||..!!!! !! ||| ||| !::! !|||! !! !: SerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuS 194680 : TCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGT : 194739 210 : laThrValValSerAlaPheSerPheAlaIleValPheAlaCysHisAlaSerGly : 227 !!||| ! !.!! !!:!|||!!.!.! !..!.!! ! |||..!!!!||| erThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGly 194740 : CGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGC : 194795 vulgar: AmOr38 16 227 . KQ414889.1 194165 194795 + 145 M 39 117 G 2 0 M 127 381 G 0 3 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194166 194795 145 + . gene_id 26 ; sequence AmOr38 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194166 194795 . + . KQ414889.1 exonerate:protein2genome:local exon 194166 194795 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 194166 194795 145 + . alignment_id 26 ; Query AmOr38 ; Align 194166 17 117 ; Align 194283 58 381 ; Align 194667 185 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 300 -> 337 Target range: 272836 -> 272947 301 : GluTrpSerGluHisAsnIleArgIleLeuGlyThrTyrIleIleThrValIleAsnI : 320 ||||||!!!!!:|||:!!.!!!:!! !||| !||||||.!!!!:! !:!!|||::!! GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 321 : leThrLeuAsnThrPheLeuIleCysTyrIleGlyGluValLeuThrGluArg : 337 !:|||...||| |||:::::!|||||||||||||||:!!|||||||||||| etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGG : 272947 vulgar: AmOr38 300 337 . KQ414889.1 272836 272947 + 122 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 272947 122 + . gene_id 27 ; sequence AmOr38 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 272947 122 + . alignment_id 27 ; Query AmOr38 ; Align 272837 301 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 300 -> 341 Target range: 258264 -> 258387 301 : GluTrpSerGluHisAsnIleArgIleLeuGlyThrTyrIleIleThrValIleAsnI : 320 ||||||||| !!..:::|||::: |||...:::|||.!!!!:! !:!!|||:::: GluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheMetIleLeuIleSerL 258265 : gaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTATGATACTCATATcac : 258322 321 : leThrLeuAsnThrPheLeuIleCysTyrIleGlyGluValLeuThrGluArgCysLy : 339 :::::...||| |||:::||||||||||||||||||:!!|||||||||!:! euSerPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluGlnValPr 258323 : tttctttcaatatttttgtaatatgttACATAGGTGAAATATTAACAGAACAGGTACC : 258379 340 : sGluIle : 341 |||||| oGluIle 258380 : agagatt : 258387 vulgar: AmOr38 300 341 . KQ414889.1 258264 258387 + 115 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258265 258387 115 + . gene_id 28 ; sequence AmOr38 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 258265 258387 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258387 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258265 258387 115 + . alignment_id 28 ; Query AmOr38 ; Align 258265 301 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 292 -> 337 Target range: 214605 -> 214740 293 : LeuPheSerTyrCysIleLeuAlaGluTrpSerGluHisAsnIleArgIleLeuGlyT : 312 ::: ...::: |||||| ||||||!:!..!:!!|||:!!! !! ! !! !| IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 313 : hrTyrIleIleThrValIleAsnIleThrLeuAsnThrPheLeuIleCysTyrIleGl : 331 |||||:!::!: ! !|||::!:::|||...||| |||:::...||||||||||| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 332 : yGluValLeuThrGluArg : 337 ||||:!!:!!:!!|||!:! yGluLeuValSerGluGln 214721 : CGAGCTTGTGTCTGAACAG : 214740 vulgar: AmOr38 292 337 . KQ414889.1 214605 214740 + 108 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 214740 108 + . gene_id 29 ; sequence AmOr38 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 214740 108 + . alignment_id 29 ; Query AmOr38 ; Align 214606 293 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 300 -> 340 Target range: 244441 -> 244561 301 : GluTrpSerGluHisAsnIleArgIleLeuGlyThrTyrIleIleThrValIleAsnI : 320 ||||||:!!||| !:!! !!:!|||||| !||||||.!!|||.!!:!!:!! !| GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheIleAlaLeuValAlaI 244442 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTATAGCACTCGTTGCTA : 244499 321 : leThrLeuAsnThrPheLeuIleCysTyrIleGlyGluValLeuThrGluArgCysLy : 339 ||..!! !|||||||||:!!:!!|||||||||.!!!!: !|||||||||!:! :! leValSerAsnThrPheIleLeuCysTyrIleSerAspArgLeuThrGluGlnValGl 244500 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGACAGGCTGACAGAACAGGTACA : 244556 340 : sGlu : 340 !||| nGlu 244557 : AGAG : 244561 vulgar: AmOr38 300 340 . KQ414889.1 244441 244561 + 107 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244442 244561 107 + . gene_id 30 ; sequence AmOr38 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244442 244561 . + . KQ414889.1 exonerate:protein2genome:local exon 244442 244561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244442 244561 107 + . alignment_id 30 ; Query AmOr38 ; Align 244442 301 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 285 -> 337 Target range: 219283 -> 219439 286 : LysAsnIleLeuSerIleCysLeuPheSerTyrCysIleLeuAlaGluTrpSerGluH : 305 :::... ::: ::: |||:::...::: !||||||!.!..!: ArgLysTyrIleTyrValAsnLeuTyrLysPheGluTyrGln***GluTrpLysSerA 219284 : agaaaatatatttacgttaatttgtataaatttgaatatcaatAGGAATGGAAATCGA : 219341 306 : isAsnIleArgIleLeuGlyThrTyrIleIleThrValIleAsnIleThrLeuAsnTh : 324 !!:!!:!!! !! ! !! !|||||||||||| !:!!|||::!:!:|||...||| snAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIl 219342 : ATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCCTcactttcaacat : 219398 325 : rPheLeuIleCysTyrIleGlyGluValLeuThrGluArg : 337 |||:::...|||||||||||||||:!!:!!.!!|||!:: ePheIlePheCysTyrIleGlyGluIleValAlaGluGln 219399 : tttcatattttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: AmOr38 285 337 . KQ414889.1 219283 219439 + 100 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219284 219439 100 + . gene_id 31 ; sequence AmOr38 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219284 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219284 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219284 219439 100 + . alignment_id 31 ; Query AmOr38 ; Align 219284 286 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1231 Query range: 0 -> 407 Target range: 256601 -> 258738 1 : MetIleAspLysPheAlaSerIleGlnGlnThrAsnAsnAsnLeuSerAsnTyrSerI : 20 |||! !:!!:!!|||||| !:!!:!! !!.! !!!.!:!! !|||:!!||||||: MetThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerL 256602 : ATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTC : 256659 21 : leGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerProSerTh : 39 !!|||||||||||||||||||||||||||||||||||||||||||||||| !!||||| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 256660 : TCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCAC : 256716 40 : rThrLysLeuGluLysIleIleSerIleValLeuIleIleCysCysTyrSerSerIle : 58 ||||! ||||||::!! !:!!||||||||||||! !||| !||||||.!!|||||| rThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIle 256717 : TACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATA : 256773 59 : CysPheThrValIleProCysLeuLeuHisValMetLeuGluAspGluSerPheArgA : 78 ! ||||||:!!|||||||||||||||||||||.!.|||!!:|||!!:|||||| LeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrM 256774 : TTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAca : 256833 79 : spLysLeuLysValLeuGlyProLeuSerHisTrpPheIleGlyAlaIleAsnTyrTh : 97 |||:::||| ...||||||:!!|||||||||.!!|||.!!..! !|||||||| etLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrTh 256834 : tgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACAC : 256890 98 : rThrLeuLeuLeuArgSerLysGluIleArgTyrCysIleGluHisMetGlnArgAsp : 116 | !|||||||||!:!.!!|||!!:||||||||||||:!!||||||!!::!!! !||| rLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAsp 256891 : GTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGAT : 256947 117 : TrpArgIleValThrArgThrGluAspGlnGlnIleMetMetLysHisAlaLysIleG : 136 ||||||!!:|||! !||| !:!!|||||||||:!:|||||||||:!!|||!:!.!!| TrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheG 256948 : TGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCG : 257007 137 : lyArgTyrIleAlaValPheSerAlaAlaPheMetGlnGlyGlyValLeuSerAsnCy : 155 ||||||||:!:|||..!|||!!!||||||.!!||||||.!!||||||... lyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePh 257008 : GTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttctt : 257064 156 : sAlaValThrAlaPheSerThrGlnThrIleGluIleGlyAsnValThrLysThrIle : 174 ..! !:!!|||.!.!:!|||:!!! !|||.!.:!:||||||! !|||! !! !:!: eValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleVal 257065 : cgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTG : 257121 175 : HisMetIleProCysThrAlaTyrLysLysLeuIleAlaValAspThrSerProThrA : 194 !..:!!:!!||| !|||!.!||||||||||||:!: !|||||| !|||||||||| ArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrA 257122 : CGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGA : 257181 195 : snGluIleValIleAlaSerGlnPheLeuSerGlyPheIleValAsnSerSerAlaVa : 213 |||||||||||:!! !! !||| !! !|||..!.!!|||!.!!.!!!!|||.!!|| snGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrVa 257182 : ACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGT : 257238 214 : lGlyAlaValSerIleAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerLeu : 232 |.!! ! !!|||:!!|||||||||||||||.!!||||||! !|||||||||!!!:!! lSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrVal 257239 : TAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTG : 257295 233 : LeuMetValTrpIleArgGluPheValAspHisSerLysLysIleHisAspLysAsnI : 252 |||||| !||||||! !|||||||||:!!.!.|||!:!!!. !..:::|||.... LeuMetSerTrpIleThrGluPheValAsnGluSerArgAsn---ArgGluLysThrP 257296 : CTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAAT---CGggagaaaacgt : 257352 253 : leGlyLeuAsnLysIleGlyLysIleValArgHisHisLeuArgThrLeu{Se} >> : 269 .. ..!!!.:!!|||||| !||||||..!||||||||||||..!|||{||} heProPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Se}++ 257353 : ttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt.. : 257407 270 : >> Target Intron 1 >>>> {r}PheValThrGlyIleGluAsnValMetSer : 279 76 bp {|}|||:!!:!! !||||||.!.||||||!:! ++{r}PheIleSerTyrIleGluGluValMetAsn 257408 : .......................ag{T}TTCATATCATATATCGAGGAAGTGATGAAC : 257509 280 : GlyIleCysPheMetGluLeuPheLysCysThrValAsnIleCysMetLeuGlyTyrT : 299 !!|||||||||:!:|||||||||!:!||||||:!! !||||||||||||||||||| ArgIleCysPheLeuGluLeuPheArgCysThrLeuAlaIleCysMetLeuGlyTyrT 257510 : CGAATATGTTTTTTAGAGTTGTTTAGATGCACGCTGGCTATATGCATGCTGGGATACT : 257569 300 : yrIleLeuThr >>>> Target Intron 2 >>>> AlaTrpSerValHisAsp : 308 ||||||||.!! 684 bp !||||||..!!..||| yrIleLeuAla++ ++GluTrpSerThrGlnAsp 257570 : ACATTCTTGCGgt.........................aggaATGGTCTACGCaagat : 258280 309 : IleGlnAsnMetValValPheLeuValIleLeuLeuSerMetIlePheAsnIlePheI : 328 |||||||||::: ::!!!!:!!||||||:!!|||::: ||||||||||||: IleGlnAsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheV 258281 : attcaaaatttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttg : 258340 329 : leIleCysTyrIleGlyAspIleLeuThrGluGln >>>> Target Intron 3 : 340 ::|||||||||||||||!!:||||||||||||||| 90 bp alIleCysTyrIleGlyGluIleLeuThrGluGln++ 258341 : taatatgttACATAGGTGAAATATTAACAGAACAGgt..................... : 258378 341 : >>>> CysLysMetIleGlyGluAlaValTyrMetThrAsnTrpTyrTyrLeuProG : 357 ||||||! :!!|||!!:!.!||||||||||||:!!|||||||||||||||! ++CysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProA 258379 : ....agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTG : 258517 358 : lyLysAspIleLeuAsnLeuValGlnIleIleLeuArgSerSerMetValIleLysIl : 376 !||| ||||||:!!|||:!! !:!!||| !|||||||||:!!|||:!!:!!|| spLysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIl 258518 : ACAAAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAAT : 258574 377 : eThrAlaGlyLysLeuValHisMetSerIleTyrThrPheGlyAsn >>>> Targe : 392 |||||||||||||... |||||||||||||||||||||.!!:!! eThrAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAsp++ 258575 : CACCGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATgt.......... : 258624 393 : t Intron 4 >>>> ValMetLysThrAlaPheAlaTyrLeuAsnLeuLeuArgGl : 405 69 bp |||!!:||||||:!!|||||||||||||||||||||||||| ++ValIleLysThrSerPheAlaTyrLeuAsnLeuLeuArgGl 258625 : ...............agGTAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCA : 258730 406 : nMetThr : 407 |:!::!! nValSer 258731 : AGTATCG : 258738 vulgar: AmOr32 0 407 . KQ414889.1 256601 258738 + 1231 M 246 738 G 1 0 M 21 63 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256602 258738 1231 + . gene_id 1 ; sequence AmOr32 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256602 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256602 257404 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256602 258738 1231 + . alignment_id 1 ; Query AmOr32 ; Align 256602 1 738 ; Align 257340 248 63 ; Align 257482 270 99 ; Align 258265 303 111 ; Align 258466 340 156 ; Align 258691 392 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1205 Query range: 0 -> 407 Target range: 259721 -> 262201 1 : MetIleAspLysPheAlaSerIleGlnGlnThrAsnAsnAsnLeuSerAsnTyrSerI : 20 |||! :!!|||! !.!! !:!!:!! !!:! !!.!!:!! !|||:!!||||||: MetThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerL 259722 : ATGACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCC : 259779 21 : leGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerProSerTh : 39 !!|||!!!|||||||||||||||||||||||||||||||||||||||||| !!||||| euGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 259780 : TCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCAC : 259836 40 : rThrLysLeuGluLysIleIleSerIleValLeuIleIleCysCysTyrSerSerIle : 58 ||||!:!||||||||||||||||||:!!:!!||||||.!! !|||||||||!!!||| rThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIle 259837 : GACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATA : 259893 59 : CysPheThrValIleProCysLeuLeuHisValMetLeuGluAspGluSerPheArgA : 78 !!|||:!!|||||||||:!!||||||:!!:!:|||||| ! ||||||!!. ! LeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrM 259894 : CTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACA : 259953 79 : spLysLeuLysValLeuGlyProLeuSerHisTrpPheIleGlyAlaIleAsnTyrTh : 97 ||| !||||||||||||||||||!!!|||||||||:!!|||..!||||||||||| etLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrTh 259954 : TGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACAC : 260010 98 : rThrLeuLeuLeuArgSerLysGluIleArgTyrCysIleGluHisMetGlnArgAsp : 116 ||||||||||||||||.!!!:!!!:|||! ! !|||:!:||||||:!!:!!!.!||| rThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAsp 260011 : AACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGAT : 260067 117 : TrpArgIleValThrArgThrGluAspGlnGlnIleMetMetLysHisAlaLysIleG : 136 |||||||||:!!|||||| !:!!||||||.!.:!:|||:!!!:!:!!||||||.!!| TrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheG 260068 : TGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCG : 260127 137 : lyArgTyrIleAlaValPheSerAlaAlaPheMetGlnGlyGlyValLeuSerAsnCy : 155 ||||||||:!!|||!.!! !!!!|||||||||:!!|||||||||||||||!!! !|| lyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCy 260128 : GCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTG : 260184 156 : sAlaValThrAlaPheSerThrGlnThrIleGluIleGlyAsnValThrLysThrIle : 174 | !||||||!.!!!.||||||:!!..!|||:!!:!:||||||! !|||!:!! !:!! sLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal 260185 : TTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTT : 260241 175 : HisMetIleProCysThrAlaTyrLysLysLeuIleAlaValAspThrSerProThrA : 194 |||:!!:!:||||||.!!!.!||||||:!!|||||| !|||:!! !||||||! !| HisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetA 260242 : CATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGA : 260301 195 : snGluIleValIleAlaSerGlnPheLeuSerGlyPheIleValAsnSerSerAlaVa : 213 |||||||||||:!!!.! !||||||:!!||||||||||||||||||||||||.!!|| snGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrVa 260302 : ACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGT : 260358 214 : lGlyAlaValSerIleAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerLeu : 232 |||| ! !!|||:!!|||||||||.!..!!|||||||||||||||||||||!:!:!! lGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnVal 260359 : TGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTG : 260415 233 : LeuMetValTrpIleArgGluPheValAspHisSerLysLysIleHisAspLysAsnI : 252 ||||||! !||||||! !||||||||||||.!.|||!:!!!. ... ! |||!!. LeuMetGluTrpIleThrGluPheValAspGluSerArgAsn---ArgLysLysLysA 260416 : CTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAAC---AGGAAGAAAAAGG : 260472 253 : leGlyLeuAsnLysIleGlyLysIleValArgHisHisLeuArgThrLeu{Se} >> : 269 ! !!!!!!.:!!|||||| !||||||..!||||||||||||.!!|||{!!} laProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeu{Th}++ 260473 : CTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC{AC}gt.. : 260527 270 : >> Target Intron 1 >>>> {r}PheValThrGlyIleGluAsnValMetSer : 279 257 bp {!}|||:!!:!! !!||||||:!!||||||!:! ++{r}PheIleSerArgIleGluAspValMetAsn 260528 : .......................ag{C}TTCATATCGCGTATCGAGGATGTGATGAAC : 260810 280 : GlyIleCysPheMetGluLeuPheLysCysThrValAsnIleCysMetLeuGlyTyrT : 299 !!|||||||||:!!|||||||||!:!||||||:!!:!!||||||:!:|||||||||| ArgIleCysPheLeuGluLeuPheArgCysThrLeuAspIleCysLeuLeuGlyTyrT 260811 : CGGATATGCTTCCTGGAGTTGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACT : 260870 300 : yrIleLeuThr >>>> Target Intron 2 >>>> AlaTrpSerValHisAsp : 308 ||||||||! ! 852 bp ! !|||:!!! !!!.||| yrIleLeuMet++ ++GluTrpAlaGluGlnAsp 260871 : ATATTCTTATGgt.........................agGAATGGGCTGAGCAAGAT : 261749 309 : IleGlnAsnMetValValPheLeuValIleLeuLeuSerMetIlePheAsnIlePheI : 328 |||||||||:!! !..!!:!!!!:!!!!:|||:!!:!!!!: !||||||:!!|||| IleGlnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheI 261750 : ATACAAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTA : 261809 329 : leIleCysTyrIleGlyAspIleLeuThrGluGln >>>> Target Intron 3 : 340 |||||||||||||||||!!:||||||||||||||| 81 bp leIleCysTyrIleGlyGluIleLeuThrGluGln++ 261810 : TAATCTGTTACATCGGTGAAATACTAACGGAACAGgt..................... : 261847 341 : >>>> CysLysMetIleGlyGluAlaValTyrMetThrAsnTrpTyrTyrLeuProG : 357 |||..!! :!!|||!!:!.!||||||||||||||||||||||||||||||! ++CysSerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuProA 261848 : ....agTGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACCTG : 261977 358 : lyLysAspIleLeuAsnLeuValGlnIleIleLeuArg-SerSerMetValIleLysI : 376 !|||..!||||||:!!|||:!! !|||||| !|||#!:! !! !! !|||!.. spLysSerIleLeuAspLeuIleLeuIleIleAlaArg#AsnArgArgGluIleSerS 261978 : ATAAAAGTATCCTTGATTTGATTTTGATCATTGCACGAAAACCGCCGGGAAATTAGTT : 262035 377 : leThrAlaGlyLysLeuValHisMet{S} >>>> Target Intron 4 >>>> : 385 !!.!!.!||| !! !|||!.. {|} 71 bp erAsnValGlyLeuHisValArgArg{S}++ +- 262036 : CAAATGTCGGTTTACACGTTCGGCGA{T}gt.........................ac : 262132 386 : {er}IleTyrThrPheGlyAsnValMetLysThrAlaPheAlaTyrLeuAsnLeuLeu : 403 {||}! ! !.!. !.!.|||:!:|||||||||||||||||||||||||||||| {er}SerProLeuIlePheGlnValValLysThrAlaPheAlaTyrLeuAsnLeuLeu 262133 : {CA}AGTCCGTTGATATTCCAGGTGGTTAAAACTGCTTTCGCGTATCTGAATCTGTTG : 262187 404 : ArgGlnMetThr : 407 |||||||||||| ArgGlnMetThr 262188 : CGTCAAATGACG : 262201 vulgar: AmOr32 0 407 . KQ414889.1 259721 262201 + 1205 M 246 738 G 1 0 M 21 63 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 30 90 F 0 1 M 15 45 S 0 1 5 0 2 I 0 67 3 0 2 S 1 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259722 262201 1205 + . gene_id 2 ; sequence AmOr32 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259722 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259722 260524 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262062 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262062 . + . insertions 0 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local splice5 262063 262064 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 262063 262133 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 262132 262133 . + . intron_id 3 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 262134 262201 . + . KQ414889.1 exonerate:protein2genome:local exon 262134 262201 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259722 262201 1205 + . alignment_id 2 ; Query AmOr32 ; Align 259722 1 738 ; Align 260460 248 63 ; Align 260783 270 99 ; Align 261734 303 111 ; Align 261926 340 90 ; Align 262017 370 45 ; Align 262136 386 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1108 Query range: 0 -> 302 Target range: 266586 -> 267558 1 : MetIleAspLysPheAlaSerIleGlnGlnThrAsnAsnAsnLeuSerAsnTyrSerI : 20 ||| !:!!:!!! ! !|||:!! !!.! |||!:!||||||:!!||||||: MetAlaAsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerL 266587 : ATGGCTAACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCC : 266644 21 : leGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerProSerTh : 39 !:|||||||||||||||||||||||||||||||||||||||||||||! ! !! !|| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuTh 266645 : TGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCAC : 266701 40 : rThrLysLeuGluLysIleIleSerIleValLeuIleIleCysCysTyrSerSerIle : 58 |:!!|||||||||::!|||:!!||| !!.!||||||:!! !||||||!!!|||||| rSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIle 266702 : ATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATA : 266758 59 : CysPheThrValIleProCysLeuLeuHisValMetLeuGluAspGluSerPheArgA : 78 |||||||||||||||||||||!!!|||:!!:!:|||||||||||||||.!!||| LeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgT 266759 : CTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTA : 266818 79 : spLysLeuLysValLeuGlyProLeuSerHisTrpPheIleGlyAlaIleAsnTyrTh : 97 |||:!!||||||!!!|||||||||||||||||||||:!!|||!.!||||||||||| hrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrTh 266819 : CGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACAC : 266875 98 : rThrLeuLeuLeuArgSerLysGluIleArgTyrCysIleGluHisMetGlnArgAsp : 116 ||||||||||||||||||||||||||||||| !|||:!!||||||||||||! !||| rThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAsp 266876 : CACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGAT : 266932 117 : TrpArgIleValThrArgThrGluAspGlnGlnIleMetMetLysHisAlaLysIleG : 136 |||||||||||||||||| !!||||||:!!|||:!:|||:!!|||:!!|||!:!|||| TrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleG 266933 : TGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCG : 266992 137 : lyArgTyrIleAlaValPheSerAlaAlaPheMetGlnGlyGlyValLeuSerAsnCy : 155 ||||||||||||||:!!|||!!!||||||||||||||| !!|||||||||.!! !!|| lyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCy 266993 : GTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTG : 267049 156 : sAlaValThrAlaPheSerThrGlnThrIleGluIleGlyAsnValThrLysThrIle : 174 |!.!:!!|||||||||!!!! !||||||:!:|||:!!||||||! !|||!:!! !:!! sValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleVal 267050 : TGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTA : 267106 175 : HisMetIleProCysThrAlaTyrLysLysLeuIleAlaValAspThrSerProThrA : 194 |||:!!:!:||||||.!!!.!|||||||||:!!||||||||||||||||||||||||| HisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrA 267107 : CATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGA : 267166 195 : snGluIleValIleAlaSerGlnPheLeuSerGlyPheIleValAsnSerSerAlaVa : 213 |||||||||||:!!!.!|||||||||:!!||||||||||||||||||||||||!.!|| snGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValVa 267167 : ACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGT : 267223 214 : lGlyAlaValSerIleAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerLeu : 232 ||||||| !!|||:!!|||||||||||||||||||||||||||||||||||||||:!! lGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerVal 267224 : CGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTG : 267280 233 : LeuMetValTrpIleArgGluPheValAspHisSerLysLysIleHisAspLysAsnI : 252 ||||||:!!||||||!:!|||||||||:!!!..|||!:! ! !:!!||||||: LeuMetMetTrpIleLysGluPheValAsnArgSerArgAsp---SerAsnLysAsnV 267281 : CTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGAT---AGCAATAAGAACG : 267337 253 : leGlyLeuAsnLysIleGlyLysIleValArgHisHisLeuArgThrLeu{Se} >> : 269 !! !!!!!:!!||||||||| !:!!|||..!||||||||||||..!|||{||} alCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 267338 : TTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG}gt.. : 267392 270 : >> Target Intron 1 >>>> {r}PheValThrGlyIleGluAsnValMetSer : 279 69 bp {|}|||:!!.!! !!||||||!:!||||||||| ++{r}PheIleAlaArgIleGluSerValMetSer 267393 : .......................ag{C}TTCATAGCACGTATCGAAAGTGTAATGAGC : 267487 280 : GlyIleCysPheMetGluLeuPheLysCysThrValAsnIleCysMetLeuGlyTyrT : 299 ! !||||||||||||||||||||||||||||||:!!:!!||||||:!!|||.!!|||| GluIleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSerTyrT 267488 : GAAATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCTATT : 267547 300 : yrIleLeuThr : 302 ||||||||||| yrIleLeuThr 267548 : ATATCCTTACG : 267558 vulgar: AmOr32 0 302 . KQ414889.1 266586 267558 + 1108 M 246 738 G 1 0 M 21 63 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266587 267558 1108 + . gene_id 3 ; sequence AmOr32 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266587 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266587 267389 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267558 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267558 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266587 267558 1108 + . alignment_id 3 ; Query AmOr32 ; Align 266587 1 738 ; Align 267325 248 63 ; Align 267460 270 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1068 Query range: 12 -> 302 Target range: 274368 -> 275309 13 : AsnAsnLeuSerAsnTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyA : 32 :!!!:!||||||:!!||||||:!:|||||||||||||||||||||||||||||||||| AspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyA 274369 : GACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCG : 274426 33 : laTrpProProSerProSerThrThrLysLeuGluLysIleIleSerIleValLeuIl : 51 |||||||| !:!! !! !!|||||||||!!!|||::!|||:!!||| !:::||||| laTrpProLeuAlaSerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIl 274427 : CGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaat : 274483 52 : eIleCysCysTyrSerSerIleCysPheThrValIleProCysLeuLeuHisValMet : 70 |... ||||||!!!! !||| !! !|||||||||||| !!:!!!!!|||:!!!!: ePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIlePheHisIleIle 274484 : cttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATA : 274540 71 : LeuGluAspGluSerPheArgAspLysLeuLysValLeuGlyProLeuSerHisTrpP : 90 |||! !|||||||||.!!!.! |||||||||:!!||||||||||||.!!||||||| LeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpP 274541 : CTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGT : 274600 91 : heIleGlyAlaIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgTyrCy : 109 ||||||||!.!|||||||||||||||||||||||||||||||||||||||||| !|| heIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCy 274601 : TCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTG : 274657 110 : sIleGluHisMetGlnArgAspTrpArgIleValThrArgThrGluAspGlnGlnIle : 128 |:!:||||||||||||! !||||||||||||||||||||| !!||||||||||||:!: sValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnVal 274658 : CGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTG : 274714 129 : MetMetLysHisAlaLysIleGlyArgTyrIleAlaValPheSerAlaAlaPheMetG : 148 |||:!!|||:!!||||||||||||||||||:!!|||:!!|||!!!||||||||||||| MetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetG 274715 : ATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGC : 274774 149 : lnGlyGlyValLeuSerAsnCysAlaValThrAlaPheSerThrGlnThrIleGluIl : 167 || !!|||||||||!!! !!|||!.!:!!|||||||||!!!! !||||||:!!:!!:! lnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnVa 274775 : AATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGT : 274831 168 : eGlyAsnValThrLysThrIleHisMetIleProCysThrAlaTyrLysLysLeuIle : 186 !||||||! !|||!:!|||:!:||||||:!:||||||! !||||||||||||:!!:!! lGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLysLysIleVal 274832 : AGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTC : 274888 187 : AlaValAspThrSerProThrAsnGluIleValIleAlaSerGlnPheLeuSerGlyP : 206 |||||||||||||||||||||||||||||||||:!!||||||||||||:!!||||||| AlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyP 274889 : GCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGAT : 274948 207 : heIleValAsnSerSerAlaValGlyAlaValSerIleAlaAlaValPheAlaAlaHi : 225 ||||||||||||||||||||||||||||| !!|||:!!|||||||||||||||||||| heIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHi 274949 : TTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACA : 275005 226 : sAlaCysGlyGlnLeuSerLeuLeuMetValTrpIleArgGluPheValAspHisSer : 244 ||||! !||||||||||||:!!||||||:!!||||||! !|||||||||:!!|||||| sAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheValAsnHisSer 275006 : CGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCC : 275062 245 : LysLysIleHisAspLysAsnIleGlyLeuAsnLysIleGlyLysIleValArgHisH : 264 !:! ! ...:::||||||::: ...::!:!!|||||| !:!!|||..!|||| ArgAsp---GlnAsnLysAsnValTyrPheSerGluIleGlyValValValGluHisH 275063 : AGGGAt---cagaataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATC : 275119 265 : isLeuArgThrLeu{Se} >>>> Target Intron 1 >>>> {r}PheValTh : 272 ||||||||..!|||{||} 74 bp {|}|||:!!.! isLeuArgValLeu{Se}++ ++{r}PheIleAl 275120 : ATCTGAGGGTACTC{AG}gt.........................ag{T}TTCATAGC : 275217 273 : rGlyIleGluAsnValMetSerGlyIleCysPheMetGluLeuPheLysCysThrVal : 291 ! !!||||||:!!||||||!:! !!||||||||||||||||||||||||||||||:!! aArgIleGluAspValMetAsnArgIleCysPheMetGluLeuPheLysCysThrLeu 275218 : ACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAATTGTTCAAGTGTACTCTG : 275274 292 : AsnIleCysMetLeuGlyTyrTyrIleLeuThr : 302 :!!!!:||||||||||||||||||||||||||| AspMetCysMetLeuGlyTyrTyrIleLeuThr 275275 : GATATGTGCATGCTTGGCTATTACATTCTCACG : 275309 vulgar: AmOr32 12 302 . KQ414889.1 274368 275309 + 1068 M 234 702 G 1 0 M 21 63 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274369 275309 1068 + . gene_id 4 ; sequence AmOr32 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274369 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274369 275135 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275309 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275309 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274369 275309 1068 + . alignment_id 4 ; Query AmOr32 ; Align 274369 13 702 ; Align 275071 248 63 ; Align 275211 270 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 947 Query range: 15 -> 407 Target range: 236846 -> 238921 16 : SerAsnTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProP : 35 |||:!!||||||:!!|||! !||||||||| :!!||| !||||||.!!||||||! SerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProG 236847 : AGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCAC : 236904 36 : roSerProSerThrThrLysLeuGluLysIleIleSerIleValLeuIleIleCysCy : 54 !! ! !!||| !!.||||||!:!! !|||||| !:!!|||! !:!: !|| lnPheSerSer------AsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCy 236905 : AGTTCTCGTCG------AACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTG : 236955 55 : sTyrSerSerIleCysPheThrValIleProCysLeuLeuHisValMetLeuGluAsp : 73 ||||!!!:!!||| |||:!!:!!|||||||||! !||||||:!!||||||||| ! sTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLys 236956 : CTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAA : 237012 74 : GluSerPheArgAspLysLeuLysValLeuGlyProLeuSerHisTrpPheIleGlyA : 93 ! !!!!||| ! |||:!!|||:!!|||||| !!|||||||||||| ! .!! !! GlyThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysI 237013 : GGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTA : 237072 94 : laIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgTyrCysIleGluHi : 112 !|||!:!||||||! !|||||||||||| !!||| ||||||:!!! !.!!.!.|| leIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHi 237073 : TCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCA : 237129 113 : sMetGlnArgAspTrpArgIleValThrArgThrGluAspGlnGlnIleMetMetLys : 131 ||||:!!! !|||||||||! ..!|||||| ||| :::::::::|||:!!||| sMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLys 237130 : TATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAG : 237186 132 : HisAlaLysIleGlyArgTyrIleAlaValPheSerAlaAlaPheMetGlnGlyGlyV : 151 :!!||||||.!!.!!|||||| |||:!!! !!!!.!! !|||!!:!!.||||||: TyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyI 237187 : TACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTA : 237246 152 : alLeuSerAsnCysAlaValThrAlaPheSerThrGlnThrIleGluIleGlyAsnVa : 170 !!|||.!! !!|||!.!:!!||||||! !!!!|||..!..!:!!! !:!!|||||| leLeuGlyTyrCysValMetThrAlaSerThrThrMetValValValValGlyAsnLy 237247 : TACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAA : 237303 171 : lThrLysThrIleHisMetIleProCysThrAlaTyrLysLysLeuIleAlaValAsp : 189 !|||! !! !:!:!.!:!!:!:|||! !! !|||||| !|||:!! !!|||||| sThrThrIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAsp 237304 : GACTACGATCTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGAT : 237360 190 : ThrSerProThrAsnGluIleValIleAlaSerGlnPheLeuSerGlyPheIleValA : 209 |||!:! !!! !|||!!:||||||:!! !||||||||||||||||||||||||!.!| ThrAsnThrMetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaA 237361 : ACGAATACTATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGA : 237420 210 : snSerSerAlaValGlyAlaValSerIleAlaAlaValPheAlaAlaHisAlaCysGl : 228 ||!:!||||||:!!.!!!.!:!!|||:!!.!!::!!.!.!..!!:!!||||||! !|| snAsnSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGl 237421 : ACAACAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGG : 237477 229 : yGlnLeuSerLeuLeuMetValTrpIleArgGluPheValAspHisSerLysLysIle : 247 ||||||||||:!!:!!|||:!!! !|||..!!!:||||||..!.!.:!!!:!::: yGlnLeuSerValValMetLeuSerIleGluAspPheValSerGluAlaArgArg--- 237478 : CCAGTTGAGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGC--- : 237534 248 : HisAspLysAsnIleGlyLeuAsnLysIleGlyLysIleValArgHisHisLeuArgT : 267 ...! |||:!! ! !!!!:!!:!!||| !! !||||||..!.!.|||||||||. ArgGlyLysAspAspHisPheAspGluIleProThrIleValGluGluHisLeuArgV 237535 : AGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAG : 237591 268 : hrLeu{Se} >>>> Target Intron 1 >>>> {r}PheValThrGlyIleGl : 275 .!|||{!:} 68 bp {!}|||:!!:!! !!||||| alLeu{As}++ ++{n}PheIleSerArgIleGl 237592 : TGTTG{AA}gt.........................ag{C}TTCATATCGCGCATAGA : 237683 276 : uAsnValMetSerGlyIleCysPheMetGluLeuPheLysCysThrValAsnIleCys : 294 | :!!|||!:! ! ||||||:!!||||||.!.!:!|||! !:!! !:!!||| uAlaMetMetAsnLysAlaCysPheLeuGluLeuMetArgCysMetIleAlaValCys 237684 : GGCAATGATGAACAAAGCGTGTTTCCTGGAGTTAATGAGGTGCATGATAGCTGTATGC : 237740 295 : MetLeuGlyTyrTyrIleLeuThr >>>> Target Intron 2 >>>> AlaTr : 304 |||||||||||||||!!!! ! 645 bp ! !|| AlaLeuGlyTyrTyrIlePheMet++ ++GluTr 237741 : GCACTTGGATATTATATATTCATGgt.........................agGAATG : 238415 305 : pSerValHisAspIleGlnAsnMetValValPheLeuValIleLeuLeuSerMetIle : 323 |:!!! ! !||| !:!!! !:!::!!..!!:!!!!||| !|||:!!:!!!!::!! pAlaGluSerAspAlaLysIleLeuIleThrTyrPheValAlaLeuValAlaIleVal 238416 : GGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTGTAGCACTCGTTGCTATTGTT : 238472 324 : PheAsnIlePheIleIleCysTyrIleGlyAspIleLeuThrGluGln >>>> Tar : 340 ! !|||! !||||||:!!|||||||||.!!!!:! |||||||||||| SerAsnThrPheIleLeuCysTyrIleSerGluArgLeuThrGluGln++ 238473 : TCTAATACATTTATACTCTGTTATATCAGCGAAAGGCTGACAGAACAGgt........ : 238525 341 : get Intron 3 >>>> CysLysMetIleGlyGluAlaValTyrMetThrAsnTrp : 352 106 bp ||| !! :!!||||||!.!||||||||||||:!!||| ++CysLeuLysValGlyGluValValTyrMetThrAspTrp 238526 : .................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGG : 238665 353 : TyrTyrLeuProGlyLysAspIleLeuAsnLeuValGlnIleIleLeuArgSerSerM : 372 |||||||||||| !!:! ||||||:!!|||:!!! !|||||| !||||||!:!: TyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnV 238666 : TATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACG : 238725 373 : etValIleLysIleThrAlaGlyLysLeuValHisMetSerIleTyrThrPheGlyAs : 391 !!|||:!!|||:!!||||||||||||:!!:!!|||||||||:!!||||||||||||:! alValValLysValThrAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAs 238726 : TGGTCGTTAAAGTCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGA : 238782 392 : n >>>> Target Intron 4 >>>> ValMetLysThrAlaPheAlaTyrLeuA : 401 ! 89 bp |||:!:||||||!.!|||||||||:!!| p++ ++ValValLysThrGlyPheAlaTyrMetA 238783 : Tgt.........................agGTAGTAAAAACAGGATTCGCCTACATGA : 238901 402 : snLeuLeuArgGlnMetThr : 407 ||:!!||| !!||||||:!! snMetLeuCysGlnMetSer 238902 : ATATGCTTTGTCAAATGTCC : 238921 vulgar: AmOr32 15 407 . KQ414889.1 236846 238921 + 947 M 23 69 G 2 0 M 206 618 G 1 0 M 21 63 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 33 99 5 0 2 I 0 641 3 0 2 M 37 111 5 0 2 I 0 102 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236847 238921 947 + . gene_id 5 ; sequence AmOr32 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 236847 237598 . + . KQ414889.1 exonerate:protein2genome:local exon 236847 237598 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 237599 237600 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 237599 237666 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 237665 237666 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 237667 237766 . + . KQ414889.1 exonerate:protein2genome:local exon 237667 237766 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 237767 237768 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 237767 238411 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 238410 238411 . + . intron_id 1 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 238412 238522 . + . KQ414889.1 exonerate:protein2genome:local exon 238412 238522 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238523 238524 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238523 238628 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 238627 238628 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238629 238784 . + . KQ414889.1 exonerate:protein2genome:local exon 238629 238784 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238785 238786 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238785 238873 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 238872 238873 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238874 238921 . + . KQ414889.1 exonerate:protein2genome:local exon 238874 238921 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 236847 238921 947 + . alignment_id 5 ; Query AmOr32 ; Align 236847 16 69 ; Align 236916 41 618 ; Align 237534 248 63 ; Align 237668 270 99 ; Align 238412 303 111 ; Align 238629 340 156 ; Align 238874 392 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 863 Query range: 16 -> 392 Target range: 232456 -> 235147 17 : AsnTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS : 36 .!.||||||||||||:!!|||||||||||||||! !|||!!:||||||||||||! ! GluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgV 232457 : GAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTG : 232514 37 : erProSerThrThrLysLeuGluLysIleIleSerIleValLeuIleIleCysCysTy : 55 ! !!..!|||:!!!:! !:!!:!!:!!:!!:!!! !:!!|||! !:!! !|||:! alThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHi 232515 : TTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCA : 232571 56 : rSerSerIleCysPheThrValIleProCysLeuLeuHisValMetLeuGluAspGlu : 74 !||| !!!: !! !:!!:!!:!!||||||:!!||| !:!!:!!!!!|||||| ! sSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThr 232572 : TTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACG : 232628 75 : SerPheArgAspLysLeuLysValLeuGlyProLeuSerHisTrpPheIleGlyAlaI : 94 |||.!...!!!:!:!:!!||| !:!!||||||:!!||||||!::.!.!!:|||! !: SerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluL 232629 : AGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAAT : 232688 95 : leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgTyrCysIleGluHisMe : 113 !:|||||| ! !|||||| !!:!:!!!!.!!:|||! !||||||:!:|||!!.:! euAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnVa 232689 : TGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGT : 232745 114 : tGlnArgAspTrpArgIleValThrArgThrGluAspGlnGlnIleMetMetLysHis : 132 !:!!!:!|||||||||! !|||! !!:! !!! !!!::.!.:!:|||:!!|||:!! lLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsn 232746 : GAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAAC : 232802 133 : AlaLysIleGlyArgTyrIleAlaValPheSerAlaAlaPheMetGlnGlyGlyValL : 152 ||||||:!!||||||! |||||| !.!!:!!||| !! !|||!!. !|||||| AlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValG 232803 : GCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCG : 232862 153 : euSerAsnCysAlaValThrAlaPheSerThrGlnThrIleGluIleGlyAsnValTh : 171 !|||:!! !||||||!.!.!! !!! !...|||.!! ! :!:||||||! !!: lySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSe 232863 : GCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAG : 232919 172 : rLysThrIleHisMetIleProCysThrAlaTyrLysLysLeuIleAlaValAspThr : 190 ! ! :!!!!::!! !:!!||||||||| !|||! !||||||!!:! !..! ! rTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPhe 232920 : TTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTC : 232976 191 : SerProThrAsnGluIleValIleAlaSerGlnPheLeuSerGlyPheIleValAsnS : 210 ||||||||||||||||||:!!.!!!.! !|||! !|||||||||||||||||||||| SerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnS 232977 : AGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACT : 233036 211 : erSerAlaValGlyAlaValSerIleAlaAlaValPheAlaAlaHisAlaCysGlyGl : 229 || !.!!||||||||| !.!!:!!!.!||||||.!.||| !|||||||||||||| erValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGl 233037 : CCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACA : 233093 230 : nLeuSerLeuLeuMetValTrpIleArgGluPheValAspHisSerLysLysIleHis : 248 ||||!:!:!!:!!||| ! :!: !!!:!!.|||||| !||| !!. nLeuAsnValValMetSerLysLeuAspAspLeuValAsp------AlaLysGlyGln 233094 : GCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGAC------GCGAAAGGGCAG : 233144 249 : AspLysAsnIleGlyLeuAsnLysIleGlyLysIleValArgHisHisLeuArgThrL : 268 !!::!!!..:!!!.!! !!..|||:!!||| ||||||..!|||||||||||||||| GluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrL 233145 : GAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACAT : 233204 269 : eu{Se} >>>> Target Intron 1 >>>> {r}PheValThrGlyIleGluAs : 276 ||{||} 1315 bp {|}|||:!! !..!|||||||| eu{Se}++ ++{r}PheIleArgAsnIleGluAs 233205 : TA{AG}gt.........................ag{T}TTTATACGGAATATAGAGAA : 234543 277 : nValMetSerGlyIleCysPheMetGluLeuPheLysCysThrValAsnIleCysMet : 295 |||||||!:! !||||||.!.:!:|||||| ! !||||||:!!|||!!:|||||| nValMetAsnLeuIleCysLeuValGluLeuValGlyCysThrLeuAsnMetCysMet 234544 : CGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACGTTGAACATGTGCATG : 234600 296 : LeuGlyTyrTyrIleLeuThr >>>> Target Intron 2 >>>> AlaTrpSe : 305 |||! !||||||:!!|||||| 189 bp ! ! || LeuGluTyrTyrLeuLeuThr++ ++GluLysSe 234601 : CTCGAGTATTATTTACTCACGgt.........................agGAAAAgtc : 234819 306 : rValHisAspIleGlnAsnMetValValPheLeuValIleLeuLeuSerMetIlePhe : 324 | :::...:::..! !!:!:!!:!!:!:! !:!!||||||! !||| rLys---------GluLysLeuAlaSerTyrValIleValTyrValSerMetThrPhe 234820 : gaag---------gaaaaattagCTTCATACGTCATCGTGTACGTGTCCATGACATTt : 234867 325 : AsnIlePheIleIleCysTyrIleGlyAspIleLeuThrGluGln >>>> Target : 340 ||||||||||||...||||||||||||!!:! |||||||||||| 7 AsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGln++ 234868 : aatatattcatattttgttACATCGGAGAGACGCTTACAGAGCAGgt........... : 234917 341 : Intron 3 >>>> CysLysMetIleGlyGluAlaValTyrMetThrAsnTrpTyr : 353 4 bp |||! ! :!!|||||| !||||||||||||.!.|||||| ++CysThrLysValGlyGluLysValTyrMetThrGluTrpTyr 234918 : ..............agTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTAC : 235028 354 : TyrLeuProGlyLysAspIleLeuAsnLeuValGlnIleIleLeuArgSerSerMetV : 373 |||||| !||| ! !|||..!||||||..!||||||! !||||||||||||| ArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetV 235029 : CGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGG : 235088 374 : alIleLysIleThrAlaGlyLysLeuValHisMetSerIleTyrThrPheGlyAsnVa : 392 |||||||||||||||||||||||!!!:!!!!.||||||:!! |||||||||:!!|| alIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVa 235089 : TGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGT : 235145 393 : l : 392 | l 235146 : G : 235147 vulgar: AmOr32 16 392 . KQ414889.1 232456 235147 + 863 M 226 678 G 2 0 M 24 72 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 33 99 5 0 2 I 0 185 3 0 2 M 4 12 G 3 0 M 30 90 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232457 235147 863 + . gene_id 6 ; sequence AmOr32 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232457 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232457 233208 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232457 235147 863 + . alignment_id 6 ; Query AmOr32 ; Align 232457 17 678 ; Align 233135 245 72 ; Align 234525 270 99 ; Align 234813 303 12 ; Align 234825 310 90 ; Align 234989 340 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 790 Query range: 9 -> 268 Target range: 262825 -> 263599 10 : GlnThrAsnAsnAsnLeuSerAsnTyrSerIleGlnLeuAsnArgTrpPheLeuLysP : 29 :!!!:! !..!!:!||||||:!!||||||:!:|||:!!|||||||||.!.||||||| GluSerPheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysP 262826 : GAAAGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAAC : 262883 30 : roIleGlyAlaTrpProProSerProSerThrThrLysLeuGluLysIleIleSerIl : 48 |||||||||||||||||! !||| !!|||! !:!!!:!:!!|||::!||||||!!!.! roIleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPh 262884 : CGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTT : 262940 49 : eValLeuIleIleCysCysTyrSerSerIleCysPheThrValIleProCysLeuLeu : 67 !:!!||||||:!! !||||||!!! !||| ! !||||||||||||! !:!!||| eLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeu 262941 : TCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTT : 262997 68 : HisValMetLeuGluAspGluSerPheArgAspLysLeuLysValLeuGlyProLeuS : 87 |||:!!:!:||||||! !|||!:!|||!.! ||||||:!!|||||||||||||||. HisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuG 262998 : CATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCG : 263057 88 : erHisTrpPheIleGlyAlaIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIl : 106 !!!!.||||||:!!||| !|||||||||||| !|||||||||!.!||||||!!:|| lyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIl 263058 : GTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATAT : 263114 107 : eArgTyrCysIleGluHisMetGlnArgAspTrpArgIleValThrArgThrGluAsp : 125 |!:! !|||:!::!!|||:!!|||..!|||||| !!|||||||||||| !|||||| eGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAsp 263115 : ACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGAT : 263171 126 : GlnGlnIleMetMetLysHisAlaLysIleGlyArgTyrIleAlaValPheSerAlaA : 145 |||!::||||||:!!|||:!!|||||| !|||||||||:!:|||!.!! !!!!||| GlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaI 263172 : CAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGA : 263231 146 : laPheMetGlnGlyGlyValLeuSerAsnCysAlaValThrAlaPheSerThrGlnTh : 164 !||||||||| !.!!:!!:!!!!!!!.||| !||||||||||||!!!||||||.. lePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnVa 263232 : TCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGT : 263288 165 : rIleGluIleGlyAsnValThrLysThrIleHisMetIleProCysThrAlaTyrLys : 183 !|||||| !||||||! !|||!:!! !:!!!.!|||:!!|||||| !!!.!|||||| lIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLys 263289 : GATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAA : 263345 184 : LysLeuIleAlaValAspThrSerProThrAsnGluIleValIleAlaSerGlnPheL : 203 :!!:!!||| !!|||||||||!:!||||||||||||||| !!:!!|||!!!||||||| GluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheL 263346 : GAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTC : 263405 204 : euSerGlyPheIleValAsnSerSerAlaValGlyAlaValSerIleAlaAlaValPh : 222 |||||||||||||||||!.!:!!!!!.!!||||||||| !!.!!!!:.!!|||||||| euSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPh 263406 : TGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTT : 263462 223 : eAlaAlaHisAlaCysGlyGlnLeuSerLeuLeuMetValTrpIleArgGluPheVal : 241 ||||!.!||||||||||||||||||!:!:!!|||||| !||||||! !||||||||| eAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheVal 263463 : CGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTG : 263519 242 : AspHisSerLysLysIleHisAspLysAsnIleGlyLeuAsnLysIleGlyLysIleV : 261 :!!!!.|||!:! ! .!.:!!||||||:!! !!!!!.!:!!|||||| !|||| AsnGlnSerArgAsp---GluAsnLysAsnLeuTyrPheThrGluIleGlyValIleV 263520 : AACCAGTCCAGGGAT---GAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCG : 263576 262 : alArgHisHisLeuArgThrLeu : 268 ||..!||||||||||||..!||| alGluHisHisLeuArgValLeu 263577 : TTGAACATCATCTGAGAGTTCTG : 263599 vulgar: AmOr32 9 268 . KQ414889.1 262825 263599 + 790 M 237 711 G 1 0 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262826 263599 790 + . gene_id 7 ; sequence AmOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262826 263599 . + . KQ414889.1 exonerate:protein2genome:local exon 262826 263599 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 262826 263599 790 + . alignment_id 7 ; Query AmOr32 ; Align 262826 10 711 ; Align 263537 248 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 700 Query range: 5 -> 407 Target range: 278540 -> 280551 6 : AlaSerIleGlnGlnThrAsnAsnAsnLeuSerAsnTyrSerIleGlnLeuAsnArgT : 25 :!!|||! !.!...!||| |||!.. !!!!! ||||||:!!|||:!!||||||| SerSerThrAspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgT 278541 : TCGTCAACCGATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTT : 278598 26 : rpPheLeuLysProIleGlyAlaTrpProProSerProSerThrThrLysLeuGluLy : 44 ||||||||||||||||||||!.!||||||! !|||! !!!!..!|||! |||||||| rpPheLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLy 278599 : GGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAA : 278655 45 : sIleIleSerIleValLeuIleIleCysCysTyrSerSerIleCysPheThrValIle : 63 ||||! !|||:!:|||||| :!! ! !!! !! ! !||| !!||| !:!!:!! sIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuVal 278656 : GATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTA : 278712 64 : ProCysLeuLeuHisValMetLeuGluAspGluSerPheArgAsp<->LysLeuLysV : 82 |||||| !||| !..!:!!|||!!: ! .!! !! !||| |||:!!|||: ProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysM 278713 : CCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAA : 278772 83 : alLeuGlyProLeuSerHisTrpPheIleGlyAlaIleAsnTyrThrThrLeuLeuLe : 101 !!:!!|||||||||||| !!! !!:!.!.!!|||!!.||| !! !|||:!!! etIleGlyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSe 278773 : TGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTC : 278829 102 : uArgSerLysGluIleArgTyrCysIleGluHisMetGlnArgAspTrpArgIleVal : 120 !|||.!! :!!||| !! ! |||:!:.!. !!!!:!::! !|||||| !:!!..! rArgGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThr 278830 : GCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACA : 278886 121 : <-><-><->ThrArgThrGluAspGlnGlnIleMetMetLysHisAlaLysIleGlyA : 137 ::: |||:::::::::||||||! ! ! !|||!:!||||||| LeuSerTyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyA 278887 : CTTTCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGAC : 278946 138 : rgTyrIleAlaValPheSerAlaAlaPheMet<->GlnGlyGlyValLeuSerAsnCy : 155 ||! !:!:|||:!!|||||||||!.!|||||| ...|||||||||!!!! !!.!.. rgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAl 278947 : GATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGC : 279003 156 : sAlaValThrAlaPheSerThrGlnThrIleGluIleGlyAsnValThrLysThrIle : 174 !!.!:!! !! !|||:!!..!!::||| |||! !|||! !||| !! ! ! aValMetProLeuPheAlaValArgThrGluIleIleAspAsnGluThrValArgSer 279004 : CGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCT : 279060 175 : HisMetIleProCysThrAlaTyrLysLysLeuIleAlaValAspThrSerProThrA : 194 !!. !.!!||| !|||::: |||:!!! ! ! !|||||||||:!! GlnAlaPhePro------IleTyrArgGlyLeuLeuAspProArgThrSerProSerP 279061 : CAAGCGTTCCCG------ATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGT : 279114 195 : snGluIleValIleAlaSerGlnPheLeuSerGlyPheIleValAsnSerSerAlaVa : 213 !||||||||| ! !! !|||! !|||:!!!.!|||:!!:!! !!||| !.!!|| heGluIleValGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrVa 279115 : TCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGT : 279171 214 : lGlyAlaValSerIleAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerLeu : 232 ||||||| !|||:!: !|||||||||!.! !|||!.!|||||||||!!!!!!:!! lGlyAlaCysSerLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIle 279172 : TGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATA : 279228 233 : LeuMetValTrpIleArgGluPheValAspHisSerLysLysIleHisAspLysAsnI : 252 |||:!!..! !:!: !:!!.!!:!!||| !||| !! ! ..! !!:!! LeuValThrLysLeuAspLysLeuIleAspGlyValLysGlyArgLysSerLeuSerT 279229 : CTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCA : 279288 253 : leGlyLeuAsnLysIleGlyLysIleValArgHisHisLeuArgThrLeu{Se} >> : 269 ! !.!.::!:!:||| ! |||:!!..!|||||||||!:!! !|||{.!} hrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 279289 : CGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt.. : 279343 270 : >> Target Intron 1 >>>> {r}PheValThrGlyIleGluAsnValMetSer : 279 571 bp {!}|||:!!:!! !||||||...:!!:!!!:! ++{y}PheIleSerGlnIleGluGlyLeuLeuAsn 279344 : .......................ag{T}TTTATATCGCAAATCGAGGGGCTCCTGAAC : 279940 280 : GlyIleCysPheMetGluLeuPheLysCysThrValAsnIleCysMetLeuGlyTyrT : 299 ! !|||||||||:!:|||:!!.!! ||||||:!!|||||||||.!.||| !|||| GluIleCysPheValGluValIleGlyCysThrLeuAsnIleCysPheLeuThrTyrT 279941 : GAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGACATATT : 280000 300 : yrIleLeuThr >>>> Target Intron 2 >>>> AlaTrpSerValHisAsp : 308 ||:!!|||||| 80 bp ! !|||..! !:!!||| yrLeuLeuThr++ ++GluTrpGluGlnAsnAsp 280001 : ATTTACTCACGgt.........................agGAATGGGAGCAAAATGAC : 280107 309 : IleGlnAsnMetValValPheLeuValIleLeuLeuSerMetIlePheAsnIlePheI : 328 ! !...! ! !!..!!:!|||:!!.!!|||:!!|||:!:! ||||||:!!|||| AlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerLeuThrPheAsnValPheI 280108 : GCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCA : 280167 329 : leIleCysTyrIleGlyAspIleLeuThrGluGln >>>> Target Intron 3 : 340 ||:!!||||||||||||!!:||||||:!!|||||| 74 bp leLeuCysTyrIleGlyGluIleLeuSerGluGln++ 280168 : TACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt..................... : 280205 341 : >>>> CysLysMetIleGlyGluAlaValTyrMetThrAsnTrpTyrTyrLeuProG : 357 ||| !! :!!|||! !:!!..!||||||! !:!!|||||| !||||||| ++CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProG 280206 : ....agTGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAG : 280328 358 : lyLysAspIleLeuAsnLeuValGlnIleIleLeuArgSerSerMetValIleLysIl : 376 ||||| ! !! !..!|||:!!! !|||.!! ! !|||!:! !||||||:! lyLysLysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLe 280329 : GGAAGAAAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATT : 280385 377 : eThrAlaGlyLysLeuValHisMetSerIleTyrThrPheGlyAsn >>>> Targe : 392 !||||||||||||:!!:!! !!:!:|||:!! !!:!||| !!!:! uThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSer++ 280386 : AACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt.......... : 280435 393 : t Intron 4 >>>> ValMetLysThrAlaPheAlaTyrLeuAsnLeuLeuArgGl : 405 71 bp |||:!:|||||||||||||||||||||!:!||||||||| ++ValLeuLysThrAlaPheAlaTyrLeuSerLeuLeuArgTh 280436 : ...............agGTGTTAAAAACGGCATTCGCATATCTGAGCTTATTACGTAC : 280543 406 : nMetThr : 407 !:!:||| rLeuThr 280544 : GCTTACC : 280551 vulgar: AmOr32 5 407 . KQ414889.1 278540 280551 + 700 M 73 219 G 0 3 M 42 126 G 0 9 M 27 81 G 0 3 M 31 93 G 2 0 M 88 264 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278541 280551 700 + . gene_id 8 ; sequence AmOr32 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278541 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278541 279340 . + . insertions 15 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280551 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278541 280551 700 + . alignment_id 8 ; Query AmOr32 ; Align 278541 6 219 ; Align 278763 79 126 ; Align 278898 121 81 ; Align 278982 148 93 ; Align 279075 181 264 ; Align 279913 270 99 ; Align 280092 303 111 ; Align 280277 340 156 ; Align 280504 392 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 698 Query range: 17 -> 407 Target range: 284523 -> 287338 18 : TyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerP : 37 ||||||:!!|||:!!|||||||||||||||||||||||||||!.!||||||! !|||! TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 38 : roSerThrThrLysLeuGluLysIleIleSerIleValLeuIleIleCysCysTyrSe : 56 !!!!..!|||! ||||||||||||! !|||:!:|||||| :!! ! !!! !! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 57 : rSerIleCysPheThrValIleProCysLeuLeuHisValMetLeuGluAspGluSer : 75 ! !||| !!||| !:!!:!!|||||| !||| !..!:!!|||!!: ! .!! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 76 : PheArgAsp<->LysLeuLysValLeuGlyProLeuSerHisTrpPheIleGlyAlaI : 94 !! !||| |||:!!|||:!!:!!|||||||||||| !!! .!.!!:!.!|||| AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 95 : leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgTyrCysIleGluHisMe : 113 ||!!.||| !! !|||:!!! !|||.!! :!!||| !! ! |||:!::!! !!!! leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 114 : tGlnArgAspTrpArgIleVal<-><-><->ThrArgThrGluAspGlnGlnIleMet : 129 :!:: !|||||| !:!!..! !::::: |||:::::::::|||||| eArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMet 284813 : TCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTG : 284869 130 : MetLysHisAlaLysIleGlyArgTyrIleAlaValPheSerAlaAlaPheMetGlnG : 149 ! ! ! !|||!:!|||||||||! !:!:|||:!!|||!!!|||!.!|||||| ! . ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrS 284870 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATT : 284929 150 : lyGlyValLeuSerAsnCysAlaValThrAlaPheSerThrGlnThrIleGluIleGl : 168 .!|||! !!!!! ! !! !.!!|||! ! !!!!.!!!||| ! !! |||||| erGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIl 284930 : CCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCAT : 284986 169 : yAsnValThrLysThrIleHisMetIleProCysThrAlaTyrLysLysLeuIleAla : 187 !:!! !.!:!!|||:!:... ! !!! ! !! !|||::: |||:!!! ! eAsp---AsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAsp 284987 : CGAC---AACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGAT : 285040 188 : ValAspThrSerProThrAsnGluIleValIleAlaSerGlnPheLeuSerGlyPheI : 207 ! !|||||||||:!! !||||||||| ! !! !|||! !|||:!!!.!|||: ProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheV 285041 : CCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCG : 285100 208 : leValAsnSerSerAlaValGlyAlaValSerIleAlaAlaValPheAlaAlaHisAl : 226 !!:!! !!||| !.!!||||||||| !|||:!:||||||||||||!.! !|||!. alIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisVa 285101 : TTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGT : 285157 227 : aCysGlyGlnLeuSerLeuLeuMetValTrpIleArgGluPheValAspHisSerLys : 245 !|||||||||!!!!!!:!!|||:!!..! !:!: !:!!.!!|||||| !||| lCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLys 285158 : CTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAA : 285214 246 : LysIleHisAspLysAsnIleGlyLeuAsnLysIleGlyLysIleValArgHisHisL : 265 !! ! ! !!:!! ! !.!.::!:!:||| ! |||:!!..!||||||| GlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisL 285215 : GGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATC : 285274 266 : euArgThrLeu{Se} >>>> Target Intron 1 >>>> {r}PheValThrGl : 273 ||!:!! !|||{.!} 1411 bp {!}|||:!!:!! euLysIleLeu{Gl}++ ++{y}PheIleSerGl 285275 : TGAAGATACTG{GG}gt.........................ag{T}TTTATATCGCA : 286709 274 : yIleGluAsnValMetSerGlyIleCysPheMetGluLeuPheLysCysThrValAsn : 292 !||||||...:!!:!:!:!! !|||||||||:!:|||:!!.!! ||||||:!!||| nIleGluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsn 286710 : AATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAAC : 286766 293 : IleCysMetLeuGlyTyrTyrIleLeuThr >>>> Target Intron 2 >>>> : 303 ||||||.!.||||||||||||:!!|||||| 80 bp IleCysPheLeuGlyTyrTyrLeuLeuThr++ + 286767 : ATATGCTTTTTGGGATATTATTTACTGACGgt.........................a : 286877 304 : AlaTrpSerValHisAspIleGlnAsnMetValValPheLeuValIleLeuLeuSer : 321 ! !|||..! ! !!!:! ! !...! !:!!..!!:!! !..!:!:|||:!!||| +GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSer 286878 : gGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCT : 286933 322 : MetIlePheAsnIlePheIleIleCysTyrIleGlyAspIleLeuThrGluGln >> : 340 .!.! ||||||:!!||||||:!!||||||||||||!!:||||||:!!|||||| PheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286934 : TTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt.. : 286992 341 : >> Target Intron 3 >>>> CysLysMetIleGlyGluAlaValTyrMetThr : 350 74 bp ||| !! :!!||| !:!!..!||||||! ! ++CysLeuLysValGlyLeuSerThrTyrMetIle 286993 : .......................agtGCTTAAAAGTCGGCTTGTCAACTTACATGATC : 287094 351 : AsnTrpTyrTyrLeuProGlyLysAspIleLeuAsnLeuValGlnIleIleLeuArgS : 370 :!!|||||| !|||||||||||| !! !..!|||:!!! !|||.!! ! !| AspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValS 287095 : GACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGT : 287154 371 : erSerMetValIleLysIleThrAlaGlyLysLeuValHisMetSerIleTyrThrPh : 389 ||!:! !||||||:!!||||||||||||:!!:!! !!:!:|||:!! !!:!|| erAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPh 287155 : CGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTT : 287211 390 : eGlyAsn >>>> Target Intron 4 >>>> ValMetLysThrAlaPheAlaT : 399 | !!!:! 71 bp |||:!!|||:!!|||||||||| eCysSer++ ++ValLeuLysSerAlaPheAlaT 287212 : CTGCAGCgt.........................agGTGTTGAAATCGGCATTCGCAT : 287312 400 : yrLeuAsnLeuLeuArgGlnMetThr : 407 |||||!:!||||||||| !:!:||| yrLeuSerLeuLeuArgThrLeuThr 287313 : ATCTGAGCTTATTACGTACGCTAACC : 287338 vulgar: AmOr32 17 407 . KQ414889.1 284523 287338 + 698 M 61 183 G 0 3 M 42 126 G 0 9 M 49 147 G 1 0 M 98 294 S 0 2 5 0 2 I 0 1407 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 287338 698 + . gene_id 9 ; sequence AmOr32 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284524 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 285287 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286698 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287220 287221 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 287220 287290 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287289 287290 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 287291 287338 . + . KQ414889.1 exonerate:protein2genome:local exon 287291 287338 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284524 287338 698 + . alignment_id 9 ; Query AmOr32 ; Align 284524 18 183 ; Align 284710 79 126 ; Align 284845 121 147 ; Align 284992 171 294 ; Align 286700 270 99 ; Align 286879 303 111 ; Align 287064 340 156 ; Align 287291 392 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 559 Query range: 16 -> 339 Target range: 212869 -> 214740 17 : AsnTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS : 36 ||| |||||| !! !|||||||||.!!|||||||||! ||| !|||||| !! AsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspL 212870 : aatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACA : 212927 37 : erProSerThrThrLysLeuGluLysIleIleSerIleValLeuIleIleCysCysTy : 55 .! !!! !..!:!! !:!!||||||! !|||:!! !:!!:!!! !! ! !||||| ysSerTyrValSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTy 212928 : AGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTA : 212984 56 : rSerSerIleCysPheThrValIleProCysLeuLeuHisValMetLeuGluAspGlu : 74 |.!!! !||| !!!:! !|||||||||||| !|||:!!|||.!.|||!!:! ||| rGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGlu 212985 : CGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgag : 213041 75 : SerPheArgAspLysLeuLysValLeuGlyProLeuSerHisTrpPheIleGlyAlaI : 94 :::... ::::!!:!!:!!!!!||| !!!!:!! !!! ! !!.! ! AsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuT 213042 : aatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGT : 213101 95 : leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgTyrCysIleGluHisMe : 113 !!.||| !:!!|||:!!|||!.!.!! ! !!:|||||| |||:!!|||||||| rpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMe 213102 : GGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATAT : 213158 114 : tGlnArgAspTrpArgIleValThrArgThrGluAspGlnGlnIleMetMetLysHis : 132 |:!! !||||||!:!! !:!!|||!.! !||||||:!!:!!|||||| ! !:!! tLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsn 213159 : GAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAAC : 213215 133 : AlaLysIleGlyArgTyrIleAlaValPheSerAlaAlaPheMetGlnGlyGlyValL : 152 |||!...!!|||!:! |||!.!..!.!!!!!||| !|||||| ! !||| !! AlaSerPheGlyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheT 213216 : GCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCA : 213275 153 : euSerAsnCysAlaValThrAlaPheSerThrGlnThrIleGluIleGlyAsnValTh : 171 !! ! !!! ! !|||..! !!.!!|||.!!.!.! !!!:! ! ! !:!!:!!!. hrPheTyrPheLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAs 213276 : CGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAA : 213332 172 : rLysThrIleHisMetIleProCysThrAlaTyrLysLysLeuIleAlaValAspThr : 190 ! !|||.!!......!!: ! ! !!!.!! !:! :!!:!!! !||| ! nValThrPheArgGlnMetValValProValSerArgPheIleValAspValArgTyr 213333 : CGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATAC : 213389 191 : SerProThrAsnGluIleValIleAlaSerGlnPheLeuSerGlyPheIleValAsnS : 210 ||||||..!||||||||| !!.!! !! !|||.!!:!!:!!||| ! :!::!!:!!: SerProValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisA 213390 : AGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATG : 213449 211 : erSerAlaValGlyAlaValSerIleAlaAlaValPheAlaAlaHisAlaCysGlyGl : 229 !!! !||||||! !||| !|||:!:|||||||||||||||!.!|||||||||||||| laIleAlaValValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGl 213450 : CTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACA : 213506 230 : nLeuSerLeuLeuMetValTrpIleArgGluPheValAspHisSerLysLysIleHis : 248 |:!!.!!:!!|||||| !|||:!:..!.!.!!.:!!||| .!!!:!:!! ! nMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAsp---GlyArgGluAspMet 213507 : GATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGAC---GGTAGAGAGGATATG : 213560 249 : AspLysAsnIleGlyLeuAsnLysIleGlyLysIleValArgHisHisLeuArgThrL : 268 ..!||||||:!:! ! :!!!:!|||!.! ||||||!.!!!.|||:!!|||! !| SerLysAsnValAsp---AspArgIleAlaValIleValAsnGlnHisValArgIleL 213561 : AGCAAGAATGTGGAC---GACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATAC : 213617 269 : eu{Se} >>>> Target Intron 1 >>>> {r}PheValThrGlyIleGluAs : 276 ||{!.} 840 bp {!}|||:!! ! !:!:|||!! eu{Ly}++ ++{s}PheLeuGluLeuValGluLy 213618 : TG{AA}gt.........................ag{A}TTCTTAGAGCTCGTGGAGAA : 214481 277 : nValMetSerGlyIleCysPheMetGluLeuPheLysCysThrValAsnIleCysMet : 295 .!.!:!: !! !:!!! !||| ||||||!!. !||||||||||||:!!|||:!: sAlaLeuArgGlnValSerPheAlaGluLeuLeuValCysThrValAsnLeuCysLeu 214482 : AGCACTTCGGCAAGTATCTTTCGCTGAATTATTAGTATGCACGGTGAATCTCTGTCTC : 214538 296 : LeuGlyTyrTyrIleLeuThr >>>> Target Intron 2 >>>> AlaTrpSe : 305 :!!||||||||||||:!!||| 68 bp !|||!: ValGlyTyrTyrIleIleThr++ ++GluTrpAs 214539 : GTTGGATATTACATAATAACGgt.........................aggAATGGAA : 214636 306 : rValHisAspIleGlnAsnMetValValPheLeuValIleLeuLeuSerMetIlePhe : 324 ! !:!!:!!:!! !!.!! |||..!!:!:!!|||:!:! !:!!|||::: ||| nSerAsnAsnLeuThrThrThrValThrTyrValValLeuTyrIleSerLeuThrPhe 214637 : TTCGAACAATTTAACAACTACAGTAACTTACGTGGTGTTGTATATCTCTCtcactttc : 214693 325 : AsnIlePheIleIleCysTyrIleGlyAspIleLeuThrGluGln : 339 ||||||||||||...||||||||||||!!::!!:!!:!!|||||| AsnIlePheIlePheCysTyrIleGlyGluLeuValSerGluGln 214694 : aatattttcatattttgttaCATAGGCGAGCTTGTGTCTGAACAG : 214740 vulgar: AmOr32 16 339 . KQ414889.1 212869 214740 + 559 M 226 678 G 1 0 M 10 30 G 1 0 M 14 42 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 M 33 99 5 0 2 I 0 64 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212870 214740 559 + . gene_id 10 ; sequence AmOr32 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212870 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 212870 213621 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212870 214740 559 + . alignment_id 10 ; Query AmOr32 ; Align 212870 17 678 ; Align 213548 244 30 ; Align 213578 255 42 ; Align 214463 270 99 ; Align 214630 303 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 459 Query range: 17 -> 403 Target range: 303196 -> 305816 18 : TyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerP : 37 ||| !! !:!!! !!:!!:!|||.!!|||||| !!:!!||| !|||||| !! ! TyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTrpProAlaValL 303197 : TACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTGGCCAGCCGTGT : 303254 38 : roSerThrThrLysLeuGluLysIleIleSerIleValLeuIleIleCysCysTyrSe : 56 !..! !||| ! ! !.!!:!! !!! !:!! !||| ! ! !! !!! euAspGluThr------AlaGlyPheLeuProLysIleThrIleGlyLeuSerAsnLe 303255 : TGGACGAAACC------GCAGGATTCCTACCAAAAATCACCATTGGACTCAGTAATTT : 303305 57 : rSerIleCysPheThrValIleProCysLeuLeuHisValMetLeuGluAspGluSer : 75 ! !:!!! ||||||||||||||||||:!!||||||:!!!!:!!!|||.!.:!!..! uValLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnLysAsp 303306 : GGTTCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAAAGGAT : 303362 76 : PheArgAspLysLeuLysValLeuGlyProLeuSerHisTrpPheIleGlyAlaIleA : 95 ! ! !:!||||||:!!!!!|||! !|||||| !!! !!.|||..! !!!:! ThrIleIleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLeuMetL 303363 : ACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTTGATGA : 303422 96 : snTyrThrThrLeuLeuLeuArgSerLysGluIleArgTyrCysIleGluHisMetGl : 114 !.||| !.!!||| ! !|||!.! !..!|||!:! ! |||||||||.!.:!!|| ysTyrTrpAlaLeuAlaThrArgLysProArgIleLysGluCysIleGluGluValGl 303423 : AGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAGGTGCA : 303479 115 : nArgAspTrpArgIle >>>> Target Intron 1 >>>> ValThrArgThrG : 124 |!!!||||||!:! 938 bp ||| ! ! !. nSerAspTrpLysGlu++ ++ValGluSerLeuA 303480 : AAGTGATTGGAAAGAGgt.........................agGTGGAATCTCTCA : 304447 125 : luAspGlnGlnIleMetMetLysHisAlaLysIleGlyArgTyrIleAlaValPheSe : 143 .!|||!:::!!!!:|||:!:|||:!!!.!:!!!!:|||||| !!:!:.!!:!!.!!!! rgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIleCy 304448 : GAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAATCTG : 304504 144 : rAlaAlaPheMetGlnGlyGlyValLeuSerAsnCysAlaValThrAlaPheSerThr : 162 !||| !|||||| ! !|||! ! !! ! !! !.!!|||! ! !|||:!!||| sAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheAlaThr 304505 : CGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCGACC : 304561 163 : GlnThrIleGluIleGlyAsnValThrLysThrIleHisMetIleProCysThrAlaT : 182 !||| ! :!:! !.!. !!.!:::|||||| ! !:!! !! ! !!.!!| GlyThrTyr---ValAspGluTyrAsnArgThrIleLysProLeuValTyrProThrT 304562 : GGAACGTAT---GTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACCT : 304618 183 : yrLysLysLeuIleAlaValAspThrSerProThrAsnGluIleValIleAlaSerGl : 201 ||!.. |||.!!! !|||.!.|||||||||! ! !!|||:!:||| ! ! !!! yrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheValHi 304619 : ACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCA : 304675 202 : nPheLeuSerGlyPheIleValAsnSerSerAlaValGlyAlaValSerIleAlaAla : 220 .! !:!!!!!|||!:!:!!:!! !!|||! !.!!!.!|||||| !.!!:!!|||||| sCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAla 304676 : TTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCT : 304732 221 : ValPheAlaAlaHisAlaCysGlyGlnLeuSerLeuLeuMetValTrpIleArgGluP : 240 :!!||||||.!!|||||||||||||||:!!..!:!!:!!||| ! ! :!: !!!!:. LeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAspL 304733 : CTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGATC : 304792 241 : heValAspHisSerLysLysIleHisAspLysAsnIleGlyLeuAsnLysIleGlyLy : 259 !!||| :!!||||||:!! ! !||| !:!! !!.::!:!! !:! euVal---AsnSerLysGluSerSerAspLeuAsp---------LysArgLeuIleGl 304793 : TTGTC---AACAGCAAAGAATCATCTGATTTAGAT---------AAACGATTAATAGA : 304837 260 : sIleValArgHisHisLeuArgThrLeu{Se} >>>> Target Intron 2 >>> : 269 !||||||..!||||||||||||! !|||{||} 138 bp uIleValGluHisHisLeuArgIleLeu{Se}++ 304838 : AATTGTTGAGCATCATTTGCGAATTTTA{AG}gt........................ : 304871 270 : > {r}PheValThrGlyIleGluAsnValMetSerGlyIleCysPheMetGluLeuP : 287 {|} !:!!:!! ! ! ! :!! !:!||| ||||||!!: !!! +-{r}AspMetSerThr***IleLeuLeuTyrAsnGlyAlaCysPheIleThrPheA 304872 : .ac{T}GATATGTCTACTTGAATACTACTGTATAACGGTGCGTGTTTTATAACTTTTG : 305059 288 : heLysCysThrValAsnIleCysMetLeuGlyTyrTyrIleLeuThrAlaTrpSerVa : 306 ! !!!! ||| !.!..!!! :::||| |||::: !! !|||..! sp***TrpThr***GluPheLeuValLeu------TyrLeu***GlnAspTrpGluSe 305060 : ACTAATGGACTTAGGAGTTCTTGgtttta------tatttgtaacaGGATTGGGAGAG : 305110 307 : lHisAspIleGlnAsnMetValValPheLeuValIleLeuLeuSerMetIlePheAsn : 325 ! !:!!! ! !:!:!:..!..!!:! !|||:!!|||:!!|||:!:! !|||||| rSerAsnThrValSerLeuThrThrTyrThrValLeuLeuIleSerValThrPheAsn 305111 : CAGTAATACCGTTAGTCTTACAACATATACAGTGTTACTGATATCTGTAACATTTAAT : 305167 326 : IlePheIleIleCysTyrIleGlyAspIleLeuThrGluGln >>>> Target In : 340 |||||||||:!!||||||||||||!!:||||||! !|||:!! 413 IlePheIleLeuCysTyrIleGlyGluIleLeuMetGluLys++ 305168 : ATATTCATATTATGCTACATTGGTGAGATTCTTATGGAAAAGgt.............. : 305214 341 : tron 3 >>>> CysLysMetIleGlyGluAlaValTyrMetThrAsnTrpTyrTyr : 354 bp !!!..! :!!||| !:!! !!:!|||! !!:!||||||:!! ++SerSerSerValGlyLeuSerCysPheMetIleSerTrpTyrHis 305215 : ...........agAGCAGTAGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCAT : 305667 355 : LeuProGlyLysAspIleLeuAsnLeuValGlnIleIleLeuArgSerSerMetValI : 374 |||||| !||| |||! !..!|||:!! !|||||| !! !||||||! ! LeuProThrLysThrIleHisGlyLeuIleLeuIleIleAlaMetSerSerAsnProA 305668 : TTACCGACTAAGACGATACATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAG : 305727 375 : leLysIleThrAlaGlyLysLeuValHisMetSerIleTyrThrPheGlyAsnValMe : 393 !||||||!:!|||||||||:!!||| !!:!:|||:!!! !|||||||||||||||! laLysIleSerAlaGlyLysValValAspLeuSerLeuSerThrPheGlyAsnValSe 305728 : CTAAAATCAGTGCTGGTAAAGTAGTTGATTTATCTTTATCCACATTTGGAAACGTGAG : 305784 394 : tLysThrAlaPheAlaTyrLeuAsnLeuLeu : 403 ! ! :::::: :::::::::::: rTyrTyrGlnTyrSerAsnIleSerIleVal 305785 : TTACTATcaatattccaatatttcaattgtt : 305816 vulgar: AmOr32 17 403 . KQ414889.1 303196 305816 + 459 M 23 69 G 2 0 M 77 231 5 0 2 I 0 934 3 0 2 M 46 138 G 1 0 M 75 225 G 1 0 M 9 27 G 3 0 M 14 42 S 0 2 5 0 2 I 0 134 3 0 2 S 1 1 M 27 81 G 2 0 M 41 123 5 0 2 I 0 409 3 0 2 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303197 305816 459 + . gene_id 11 ; sequence AmOr32 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303197 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303197 303496 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304868 . + . insertions 0 ; deletions 5 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 305006 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 305005 305006 . + . intron_id 1 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 305007 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305007 305211 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305816 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305816 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303197 305816 459 + . alignment_id 11 ; Query AmOr32 ; Align 303197 18 69 ; Align 303266 43 231 ; Align 304435 120 138 ; Align 304573 167 225 ; Align 304798 243 27 ; Align 304825 255 42 ; Align 305008 270 81 ; Align 305089 299 123 ; Align 305625 340 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 414 Query range: 18 -> 271 Target range: 221381 -> 222134 19 : SerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerProS : 38 |||:!:||||||!:!||||||.!!|||||||||||||||!.!|||||| !||| !!! SerValGlnLeuSerArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaA 221382 : AGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCA : 221439 39 : erThrThrLysLeuGluLysIleIleSerIleValLeuIleIleCysCysTyrSerSe : 57 :!! !:!!! !:!!|||!:! !:!!! ! :!!:!!! !:!! !||||||||| snIleSerThrValGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLe 221440 : ACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCT : 221496 58 : rIleCysPheThrValIleProCysLeuLeuHisValMetLeuGluAspGluSerPhe : 76 !||| ||| !:!!:!!|||||| !|||:!!|||!!:||||||! |||..! !! uIleThrPheLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspVal 221497 : GATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTC : 221553 77 : ArgAspLysLeuLysValLeuGlyProLeuSerHisTrpPheIleGlyAlaIleAsnT : 96 !:!!!:!:!!|||:!!||||||||||||||| !!! ! !!:!.! !:!!!!.| TyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysT 221554 : TACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGT : 221613 97 : yrThrThrLeuLeuLeuArgSerLysGluIleArgTyrCysIleGluHisMetGlnAr : 115 || ! !|||:!!||| !..!!!.!!:|||||| ! |||||||||!.!!!::!! ! yrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTr 221614 : ATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATG : 221670 116 : gAspTrpArgIleValThrArgThrGluAspGlnGlnIleMetMetLysHisAlaLys : 134 !||||||!:!! !:!!||| !:!!:!!|||:!!.!.||||||!!::!!:!!|||! pAspTrpLysAsnIleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIle 221671 : GGATTGGAAGAATATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATT : 221727 135 : IleGlyArgTyrIleAlaValPheSerAlaAlaPheMetGlnGlyGlyValLeuSerA : 154 .!!|||||| :!: !:!!.!!!!!.!! !|||||| ! .!!||| ::: PheGlyArgArgLeuIleMetIleCysThrPhePheMetTyrSerGlyPheValPheT 221728 : TTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGTACAGTggtttcgtttttt : 221787 155 : snCysAlaValThrAlaPheSerThrGlnThrIleGluIleGlyAsnValThrLysTh : 173 !!.!! ! !!||||||..! ! !||| !:!!|||... || yrTyrIleAlaIleProPheSerValGlyLysIleProAlaGlnAspValAsnValTh 221788 : attacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaac : 221844 174 : rIleHisMetIleProCysThrAlaTyrLysLysLeuIleAlaValAspThrSerPro : 192 |... !!: !! ! !! !! !:! :!!:!!! !..! !|||||| rPheIleProMetValPheProPheSerArgPheIleValAspThrArgTyrSerPro 221845 : ttttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCT : 221901 193 : ThrAsnGluIleValIleAlaSerGlnPheLeuSerGlyPheIleValAsnSerSerA : 212 ..!|||||||||:!!.!!:!! !|||.!!:!!:!!||| !:!::!!:!!|||! !. ValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleT 221902 : GTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTA : 221961 213 : laValGlyAlaValSerIleAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSe : 231 !! !!.!||| !|||:!:!.!|||:!!||||||!.!|||||||||||||||:!!.. hrSerAlaAlaCysSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMetGl 221962 : CATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCA : 222018 232 : rLeuLeuMetValTrpIleArgGluPheValAspHisSerLysLysIleHisAspLys : 250 !:!!|||||| !|||:!:!:!.!.!!.:!!:!! ! !! ! ! !!: !:!! nValLeuMetSerTrpLeuLysHisLeuIleAsnGlyArgAlaAspMetCysAsn--- 222019 : AGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGCCGGGCGGATATGTGTAAC--- : 222075 251 : AsnIleGlyLeuAsnLysIleGlyLysIleValArgHisHisLeuArgThrLeuSerP : 270 |||:!:! ! !..!:!|||!.!|||||||||!.!!!.|||:!!|||! !|||..!! AsnValAsp---ArgArgIleAlaLysIleValAsnGlnHisValArgIleLeuGlnT 222076 : AACGTGGAT---AGGAGAATAGCGAAGATTGTGAATCAACACGTTCGAATATTGCAGT : 222129 271 : heVal : 271 :!||| yrVal 222130 : ATGTA : 222134 vulgar: AmOr32 18 271 . KQ414889.1 221381 222134 + 414 M 231 693 G 1 0 M 3 9 G 1 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221382 222134 414 + . gene_id 12 ; sequence AmOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221382 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221382 222134 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 221382 222134 414 + . alignment_id 12 ; Query AmOr32 ; Align 221382 19 693 ; Align 222075 251 9 ; Align 222084 255 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 407 Query range: 16 -> 271 Target range: 217171 -> 217930 17 : AsnTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS : 36 ||| |||||||||! !|||||||||!!.|||||||||!!:||| !|||||| !| AsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnS 217172 : aatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACT : 217229 37 : erProSerThrThrLysLeuGluLysIleIleSerIleValLeuIleIleCysCysTy : 55 ||! !!!!||||||!:!! !..!||||||:!!! !! !:!!:!!! ! !! ||||| erArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTy 217230 : CACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTA : 217286 56 : rSerSerIleCysPheThrValIleProCysLeuLeuHisValMetLeuGluAspGlu : 74 |.!!! !||| !!||| ! !!:!!||||||! !:!!:!!|||.!.||||||! !||| rGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeuGluValGlu 217287 : CGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAA : 217343 75 : SerPheArgAspLysLeuLysValLeuGlyProLeuSerHisTrpPheIleGlyAlaI : 94 ..!.!! !||||||||||||:!!!!!|||||||||! ! !!! ! !!:!.! !: AspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValMetAlaPheV 217344 : GATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCG : 217403 95 : leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgTyrCysIleGluHisMe : 113 !!!!.||| !:!!|||:!!:!!!.!!.! !!!:|||||| ! |||:!:..!...!! alLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCysValArgArgIl 217404 : TCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAAT : 217460 114 : tGlnArgAspTrpArgIleValThrArgThrGluAspGlnGlnIleMetMetLysHis : 132 ::!!||||||||||||! !|||! ! !! !:!!|||::!:!! |||!!: !:!! eGluArgAspTrpArgAsnValArgCysGluLysAspArgGluAlaMetIleValAsn 217461 : CGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAAC : 217517 133 : AlaLysIleGlyArgTyrIleAlaValPheSerAlaAlaPheMetGlnGlyGlyValL : 152 |||!!..!!|||||| ! :!:!.!:!!.!!!!!.!! !|||||| ! .!!||| : AlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheV 217518 : GCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcg : 217577 153 : euSerAsnCysAlaValThrAlaPheSerThrGlnThrIleGluIleGlyAsnValTh : 171 :: !!.!! ! !!.!!|||..! !! !||| ! ! !|||! !!. alPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGluAsnGlyAs 217578 : ttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAA : 217634 172 : rLysThrIleHisMetIleProCysThrAlaTyrLysLysLeuIleAlaValAspThr : 190 ! |||.!! ! !:!: !! ! !! ! ||| ! :!!|||! !..! ! ! nLeuThrPheIleProLeuValPheProPheThrLysTyrIleIleAspThrArgTyr 217635 : CCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTAC : 217691 191 : SerProThrAsnGluIleValIleAlaSerGlnPheLeuSerGlyPheIleValAsnS : 210 !!!||||||||||||||||||.!! ! !|||!!.:!!:!!||| !:!::!!:!!. ThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisG 217692 : ACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACG : 217751 211 : erSerAlaValGlyAlaValSerIleAlaAlaValPheAlaAlaHisAlaCysGlyGl : 229 !!! !.!! !!.!||| !|||:!:||||||!.!||||||!.!|||||||||||||| lyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGl 217752 : GAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCA : 217808 230 : nLeuSerLeuLeuMetValTrpIleArgGluPheValAspHisSerLysLysIleHis : 248 |:!!..!:!!|||||| !|||:!:!:!.!.!!.:!!||| !!!! ! ! !!: ! nIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgAlaAspMetSer 217809 : GATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGAGCGGATATGAGC : 217865 249 : AspLysAsnIleGlyLeuAsnLysIleGlyLysIleValArgHisHisLeuArgThrL : 268 |||! !||| !:!|||!.!!..||||||!!!!!.|||:!!|||! !| AspThrValAspGly------ArgIleAlaSerIleValSerGlnHisValArgIleL 217866 : GATACTGTGGATGGT------AGAATCGCGAGCATCGTCAGTCAACACGTTCGGATAT : 217919 269 : euSerPheVal : 271 ||!.!! !||| euLysCysVal 217920 : TAAAGTGTGTA : 217930 vulgar: AmOr32 16 271 . KQ414889.1 217171 217930 + 407 M 237 711 G 2 0 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217172 217930 407 + . gene_id 13 ; sequence AmOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217172 217930 . + . KQ414889.1 exonerate:protein2genome:local exon 217172 217930 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 217172 217930 407 + . alignment_id 13 ; Query AmOr32 ; Align 217172 17 711 ; Align 217883 256 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 375 Query range: 7 -> 268 Target range: 208182 -> 208959 8 : IleGlnGlnThrAsnAsnAsnLeuSerAsnTyrSerIleGlnLeuAsnArgTrpPheL : 27 :!!.!.::!!.! !!!!.||| ! !!:!!:!!:!:!!!::|||||| !||| | LeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrL 208183 : CTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGT : 208240 28 : euLysProIleGlyAlaTrpProProSerProSerThrThrLysLeuGluLysIleIl : 46 ||||| !||||||:!!|||||| !||| !..! !:!! !||||||!!.! ! euLysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGl 208241 : TGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCA : 208297 47 : eSerIleValLeuIleIleCysCysTyrSerSerIleCysPheThrValIleProCys : 65 !|||:!!|||! !:!! ! !!:!!!!!! !:!! !!|||! !||||||||| ! nHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThr 208298 : GCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACC : 208354 66 : LeuLeuHisValMetLeuGluAspGluSerPheArgAspLysLeuLysValLeuGlyP : 85 !:!! !!.!!!:|||! !! !|||..!||| !|||:!!||||||:!!! !.!! GlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerA 208355 : GGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCG : 208414 86 : roLeuSerHisTrpPheIleGlyAlaIleAsnTyrThrThrLeuLeuLeuArgSerLy : 104 !!|||||| !!::.!.!!:!.! !! !!.|||..!! !:!! !:!!|||..! laLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGl 208415 : CTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGG : 208471 105 : sGluIleArgTyrCysIleGluHisMetGlnArgAspTrpArgIleValThrArgThr : 123 !!:|||||| ! |||:!!|||:!!:!::!! !|||||||||! !||| !!.! ! yAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGlu 208472 : TGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAG : 208528 124 : GluAspGlnGlnIleMetMetLysHisAlaLysIleGlyArgTyrIleAlaValPheS : 143 ||||||::!:!!||||||:!! ! :!!|||!...!!!.!||| ! :!: !|||.!.! GluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleC 208529 : GAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATAT : 208588 144 : erAlaAlaPheMetGlnGlyGlyValLeuSerAsnCysAlaValThrAlaPheSerTh : 162 !!!.!||||||||| ! |||||||||::: !!.! ! !!.!!!!! ysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrAr 208589 : GCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCG : 208645 163 : rGlnThrIleGluIleGlyAsnValThrLysThrIleHisMetIleProCysThrAla : 181 !.!.! !:!!! ! !..!! !!.! !||| !...! !:!: !! ! !!!.! gAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProVal 208646 : AGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTT : 208702 182 : TyrLysLysLeuIleAlaValAspThrSerProThrAsnGluIleValIleAlaSerG : 201 !||| :!!:!:! !||| !||||||..!||||||||| !! !.!! !| ProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValG 208703 : CCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTAC : 208762 202 : lnPheLeuSerGlyPheIleValAsnSerSerAlaValGlyAlaValSerIleAlaAl : 220 ||!!.||||||||||||:!!!.!:!!!:!! !.!!||||||||| !.!!:!:||||| lnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAl 208763 : AATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGC : 208819 221 : aValPheAlaAlaHisAlaCysGlyGlnLeuSerLeuLeuMetValTrpIleArgGlu : 239 |:!!.!!||| !||||||||||||||||||..!:!!|||||| !|||!!:..!:!! aLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLys 208820 : GCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAG : 208876 240 : PheValAspHisSerLysLysIleHisAspLysAsnIleGlyLeuAsnLysIleGlyL : 259 !!.|||||| .!!::!:!! !.!.!!:||||||:!:! ! .!.!:!:!:!.!! LeuValAsp---GlyArgGluAspGluGluLysAsnLeuAsp---GlnArgLeuAlaA 208877 : TTGGTCGAT---GGACGGGAGGACGAGGAGAAGAATTTGGAT---CAGAGGTTGGCTA : 208930 260 : ysIleValArgHisHisLeuArgThrLeu : 268 !.||||||..!!!.|||:!!|||..!:!! snIleValGluGlnHisValArgValIle 208931 : ATATCGTGGAGCAGCATGTTCGAGTGATC : 208959 vulgar: AmOr32 7 268 . KQ414889.1 208182 208959 + 375 M 235 705 G 1 0 M 10 30 G 1 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208183 208959 375 + . gene_id 14 ; sequence AmOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208183 208959 . + . KQ414889.1 exonerate:protein2genome:local exon 208183 208959 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 208183 208959 375 + . alignment_id 14 ; Query AmOr32 ; Align 208183 8 705 ; Align 208888 244 30 ; Align 208918 255 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 366 Query range: 303 -> 407 Target range: 272839 -> 273302 304 : TrpSerValHisAspIleGlnAsnMetValValPheLeuValIleLeuLeuSerMetI : 323 |||!!!! !||||||.!!|||!:!:!:..!..!!:!!!!:!!||||||:!!|||||| TrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerMetT 272840 : TGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCATga : 272897 324 : lePheAsnIlePheIleIleCysTyrIleGlyAspIleLeuThrGluGln >>>> T : 340 |||||||||||||||::!||||||||||||!!:||||||||||||::! hrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272898 : cttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt...... : 272950 341 : arget Intron 1 >>>> CysLysMetIleGlyGluAlaValTyrMetThrAsnT : 352 70 bp |||||| |||||||||!.!|||||||||||||||| ++CysLysLysIleGlyGluValValTyrMetThrAsnT 272951 : ...................agtgtaaaaaaattggcGAGGTAGTTTACATGACGAACT : 273054 353 : rpTyrTyrLeuProGlyLysAspIleLeuAsnLeuValGlnIleIleLeuArgSerSe : 371 |||||||||||||||||||||||||||||:!!|||:!! !||||||! !|||!!!|| rpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCysSe 273055 : GGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATGCAG : 273111 372 : rMetValIleLysIleThrAlaGlyLysLeuValHisMetSerIleTyrThrPheGly : 390 |:!:|||||||||||||||||||||!:!:!!|||! !||||||:!:|||||||||||| rValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPheGly 273112 : TGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTCGGC : 273168 391 : Asn >>>> Target Intron 2 >>>> ValMetLysThrAlaPheAlaTyrLe : 400 :!! 81 bp |||||||||!:!|||||||||||||| Asp++ ++ValMetLysSerAlaPheAlaTyrLe 273169 : GATgt.........................aggtGATGAAAAGTGCGTTCGCGTACTT : 273279 401 : uAsnLeuLeuArgGlnMetThr : 407 ||||:!!|||||||||! !||| uAsnMetLeuArgGlnThrThr 273280 : AAATATGCTACGACAAACGACA : 273302 vulgar: AmOr32 303 407 . KQ414889.1 272839 273302 + 366 M 36 108 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272840 273302 366 + . gene_id 15 ; sequence AmOr32 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272840 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272840 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272840 273302 366 + . alignment_id 15 ; Query AmOr32 ; Align 272840 304 108 ; Align 273018 340 156 ; Align 273255 392 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 352 Query range: 16 -> 274 Target range: 226927 -> 227695 17 : AsnTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS : 36 ||| |||||||||||||||||||||.!.|||||||||:!!||| !|||||| !!| AsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerS 226928 : AACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGT : 226985 37 : erProSerThrThrLysLeuGluLysIleIleSerIleValLeuIleIleCysCysTy : 55 ||! !!.!!:!:!!::!:!!! !!:! !.!!||| :!!:!! !.!! !||||| erArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTy 226986 : CGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTA : 227042 56 : rSerSerIleCysPheThrValIleProCysLeuLeuHisValMetLeuGluAspGlu : 74 |:!! !!!: !!||| !:!!:!! !! !! !|||:!!|||:!:||||||! :!! rAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLys 227043 : CGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAA : 227099 75 : SerPheArgAspLysLeuLysValLeuGlyProLeuSerHisTrpPheIleGlyAlaI : 94 .!! ! !:!!! !||||||:!!:!!||||||:!!||| !!:: !!:..! !: GlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuL 227100 : GGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCC : 227159 95 : leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgTyrCysIleGluHisMe : 113 !!!!.|||:!!! !||| !!!!!.!..! ! !!:|||! ! ! |||:!!|||!..!! euLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIl 227160 : TCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGAT : 227216 114 : tGlnArgAspTrpArgIleValThrArgThrGluAspGlnGlnIleMetMetLysHis : 132 ::!! !!||||||!:!! !:!!! ! ! !||||||::!.!.:!:|||:!!! !:!! eLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyr 227217 : CAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTAC : 227273 133 : AlaLysIleGlyArgTyrIleAlaValPheSerAlaAlaPheMetGlnGlyGlyValL : 152 ||| ! !|||||| ! :!: !..!.!!!!!.!! !|||:!: ...... : AlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheV 227274 : GCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcg : 227333 153 : euSerAsnCysAlaValThrAlaPheSerThrGlnThrIleGluIleGlyAsnValTh : 171 :: !|||..! !!.!!!:!.!! !!:!:!!! !! ! !:!!! !!. alPhePheTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGlyAs 227334 : tatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAA : 227390 172 : rLysThrIleHisMetIleProCysThrAlaTyrLysLysLeuIleAlaValAspThr : 190 ! ! !:! ! !..!!!:|||! ! !! ! |||! :!! !! !||| ! ! nHisSerTyrIleGlnMetProPheProPheProLysIleIleAlaAspValArgTyr 227391 : CCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTAC : 227447 191 : SerProThrAsnGluIleValIleAlaSerGlnPheLeuSerGlyPheIleValAsnS : 210 |||||| !||||||||| !!.!!:!! !||||||:!!!!!|||.!!:!::!!:!!. SerProPheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuHisG 227448 : AGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACG : 227507 211 : erSerAlaValGlyAlaValSerIleAlaAlaValPheAlaAlaHisAlaCysGlyGl : 229 !! !.!! !!.!||| !|||!!:||||||:!!.!!|||!.!|||||||||||||| lyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGl 227508 : GTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCA : 227564 230 : nLeuSerLeuLeuMetValTrpIleArgGluPheValAspHisSerLysLysIleHis : 248 |:!!..!:!!|||:!! !|||:!: !!.!.!!.:!!||| .!!!:! ! ! nMetGluValLeuValSerTrpLeuGlyHisLeuIleAsp---GlyArgAlaAspMet 227565 : GATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGAC---GGCAGAGCGGATATG : 227618 249 : AspLysAsnIleGlyLeuAsnLysIleGlyLysIleValArgHisHisLeuArgThrL : 268 ..!|||!..:!:! ! :!!!:!|||!.!!..||||||! !||||||:!!|||! !| SerLysThrLeuAsp---AspArgIleAlaSerIleValThrHisHisValArgIleL 227619 : AGCAAAACACTGGAT---GATAGAATCGCTAGCATCGTCACTCACCACGTTCGAATAT : 227675 269 : euSerPheValThrGlyIle : 274 ||!.!! !|||||| !!||| euLysCysValThrCysIle 227676 : TGAAGTGTGTAACGTGTATC : 227695 vulgar: AmOr32 16 274 . KQ414889.1 226927 227695 + 352 M 226 678 G 1 0 M 10 30 G 1 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226928 227695 352 + . gene_id 16 ; sequence AmOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226928 227695 . + . KQ414889.1 exonerate:protein2genome:local exon 226928 227695 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 226928 227695 352 + . alignment_id 16 ; Query AmOr32 ; Align 226928 17 678 ; Align 227606 244 30 ; Align 227636 255 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 303 Query range: 303 -> 407 Target range: 254074 -> 254567 304 : TrpSerValHisAspIleGlnAsnMetValValPheLeuValIleLeuLeuSerMetI : 323 |||!!!! ! !||| !|||! :!: !!..!!:!:!!|||! !|||:!!:!!:!:: TrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValV 254075 : TGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTG : 254132 324 : lePheAsnIlePheIleIleCysTyrIleGlyAspIleLeuThrGluGln >>>> T : 340 !! ||| |||:::||||||||||||.!!|||! |||||||||||| alSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 254133 : TTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt...... : 254185 341 : arget Intron 1 >>>> CysLysMetIleGlyGluAlaValTyrMetThrAsnT : 352 92 bp ||| !! :!!||||||!.!||||||||||||:!!| ++CysLeuLysValGlyGluValValTyrMetThrAspT 254186 : ...................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATT : 254311 353 : rpTyrTyrLeuProGlyLysAspIleLeuAsnLeuValGlnIleIleLeuArgSerSe : 371 |||||||||||||| !!:! ||||||:!!|||:!!! !|||||| !||||||!: rpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAs 254312 : GGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAA : 254368 372 : rMetValIleLysIleThrAlaGlyLysLeuValHisMetSerIleTyrThrPheGly : 390 !:!!|||:!!:!!|||||||||||||||::: |||||||||:!!|||||||||||| nValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGly 254369 : CGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGC : 254425 391 : Asn >>>> Target Intron 2 >>>> ValMetLysThrAlaPheAlaTyrLe : 400 :!! 89 bp |||:!:||||||!.!||||||||||| Asp++ ++ValValLysThrGlyPheAlaTyrLe 254426 : GATgt.........................agGTAGTAAAAACAGGATTCGCCTACTT : 254544 401 : uAsnLeuLeuArgGlnMetThr : 407 ||||:!!||| !!||||||:!! uAsnMetLeuCysGlnMetSer 254545 : GAATATGCTTTGTCAAATGTCC : 254567 vulgar: AmOr32 303 407 . KQ414889.1 254074 254567 + 303 M 36 108 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254075 254567 303 + . gene_id 17 ; sequence AmOr32 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254075 254182 . + . KQ414889.1 exonerate:protein2genome:local exon 254075 254182 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254183 254184 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254183 254274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254273 254274 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254275 254430 . + . KQ414889.1 exonerate:protein2genome:local exon 254275 254430 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254431 254432 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254431 254519 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 254518 254519 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254520 254567 . + . KQ414889.1 exonerate:protein2genome:local exon 254520 254567 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254075 254567 303 + . alignment_id 17 ; Query AmOr32 ; Align 254075 304 108 ; Align 254275 340 156 ; Align 254520 392 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 281 Query range: 6 -> 213 Target range: 294654 -> 295275 7 : SerIleGlnGlnThrAsnAsnAsnLeuSerAsnTyrSerIleGlnLeuAsnArgTrpP : 26 !!!!!:.!..!.||||||!..||| ! ! !!|||:!!:!!! ! !||| !!. ThrMetAspAspThrAsnArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgL 294655 : ACCATGGACGATACTAACAGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGC : 294712 27 : heLeuLysProIleGlyAlaTrpProProSerProSer<->ThrThrLysLeuGluLy : 44 !.||||||||||||||| !||||||! !! ! !||| |||!:!||||||.!.|| euLeuLysProIleGlyLeuTrpProLeuIleTyrSerHisThrSerLysLeuAsnLy 294713 : TGTTGAAACCGATCGGTCTTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAA : 294769 45 : sIleIleSerIleValLeuIleIleCysCysTyrSerSerIleCysPheThrValIle : 63 |:!!:!!||||||:!!|||||| !! ||| ! !!!!:!! |||..!:!!:!: sValLeuSerIleIleLeuIleAlaTrpCysThrLeuThrValLeuPheValLeuVal 294770 : AGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTG : 294826 64 : ProCysLeuLeuHisValMetLeuGluAspGluSerPheArgAspLysLeuLysValL : 83 |||||| !! ! ! !:!:!!!.!.! :::::: ::: |||:!!|||:!!| ProCysGlyTyrPheCysValPheHisValLysAsnValLysLeuLysMetLysLeuL 294827 : CCATGCGGATACTTCTGTGTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTC : 294886 84 : euGlyProLeuSerHisTrpPheIleGlyAlaIleAsnTyrThrThrLeuLeuLeuAr : 102 ||||||||:!! !:!!! .!.:!!..! !:!!!..|||!:! !|||:!!|||!: euGlyProValLeuTyrSerMetLeuSerMetLeuArgTyrSerCysLeuValLeuLy 294887 : TGGGTCCGGTACTATACTCTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAA : 294943 103 : gSerLysGluIleArgTyrCysIleGluHisMetGlnArgAspTrpArgIleValThr : 121 !!!! ! !.!!!:!:!!||||||||| !!!!::!!!.!||||||!:!:!::!! ! sThrProAlaPheLysHisCysIleGluAspIleGluAsnAspTrpLysLeuIleAsp 294944 : AACGCCCGCGTTCAAGCATTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGAT : 295000 122 : ArgThrGluAspGlnGlnIleMetMetLysHisAlaLysIleGlyArgTyrIleAlaV : 141 !.! !!||| !!!:! !||||||!!:|||:!!|||! !:!! !!:! !!:.!!| AsnProGluHisArgAlaIleMetIleLysAsnAlaMetValThrGlnArgMetThrV 295001 : AATCCGGAACACCGAGCGATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCG : 295060 142 : alPheSerAlaAlaPheMetGlnGlyGlyValLeuSerAsnCysAlaValThrAlaPh : 160 || !! !.!! !.!.!!: ! .!!..!!.!:!!||| !! !|||:!!... || alAlaPheThrIleIleIleTyrSerSerAlaValSerTyrHisAlaIleValProPh 295061 : TCGCTTTTACTATTATAATCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatt : 295117 161 : eSerThrGlnThrIleGluIleGlyAsnValThrLysThrIleHisMetIleProCys : 179 | :::......:!:||| ..!!!. !!.!!!.||||||!.! !:!!||| ! ePheSerAsnAlaLeuGlu---AsnLysLysAsnAsnThrIleArgAlaLeuProIle 295118 : tttttcaaacgctTTGGAG---AACAAGAAGAATAATACGATTCGTGCGTTACCAATT : 295171 180 : ThrAlaTyrLysLysLeuIleAlaValAspThrSerProThrAsnGluIleValIleA : 199 !!!.!|||:!! !!!!:!!! !!.! !!:!!||||||||| !!||||||:!!! !. ProGlyTyrGluLeuPheValAspAlaTyrSerSerProThrTyrGluIleIleArgT 295172 : CCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGTCCTACCTACGAGATCATAAGAA : 295231 200 : laSerGlnPheLeuSerGlyPheIleValAsnSerSerAlaVal : 213 !! !! |||:!!! !..!|||.!!||||||!.!!!!!.!||| hrHisLeuPheValTyrSerPhePheValAsnLysThrGlyVal 295232 : CTCATCTCTTTGTTTACTCGTTCTTCGTCAACAAAACTGGTGTC : 295275 vulgar: AmOr32 6 213 . KQ414889.1 294654 295275 + 281 M 32 96 G 0 3 M 128 384 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294655 295275 281 + . gene_id 18 ; sequence AmOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294655 295275 . + . KQ414889.1 exonerate:protein2genome:local exon 294655 295275 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294655 295275 281 + . alignment_id 18 ; Query AmOr32 ; Align 294655 7 96 ; Align 294754 39 384 ; Align 295138 168 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 281 Query range: 180 -> 407 Target range: 300219 -> 302163 181 : AlaTyrLysLysLeuIleAlaValAspThrSerProThrAsnGluIleValIleAlaS : 200 !.!||| ! !!!!|||! !..!.!.|||||||||||| !!|||||||||... GlyTyrAspTrpPheIleAspThrGlnThrSerProThrTyrGluIleValPhePheP 300220 : GGCTACGATTGGTTTATCGATACACAAACCAGTCCTACCTACGAgatcgtatttttct : 300277 201 : erGlnPheLeuSerGlyPheIleValAsnSerSerAlaValGlyAlaValSerIleAl : 219 ... .!!:!!!.!.!.|||:!! !!!:! !.!!..!!.!||| !|||:!:|| heHisCysPheAlaAlaMetIleMetTyrAsnValThrThrAlaAlaTyrSerLeuAl 300278 : ttcactgttTCGCAGCGATGATCATGTACAACGTGACAACGGCAGCGTACAGTTTGGC : 300334 220 : aAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerLeuLeuMetValTrpIleArg : 238 ||||:!!|||!.!.!!||| !|||||||||:!!..!:!!! !|||!.! ! :!:..! aAlaIlePheValThrHisIleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGlu 300335 : GGCGATATTCGTCACTCATATCTGTGGACAGATTCAGATACAGATGGCGAGATTGGAG : 300391 239 : GluPheValAspHisSerLysLysIleHisAspLysAsnIleGlyLeuAsnLysIleG : 258 !!:.!.|||!!: !:!! !!:|||:!! !|||! !:!! :!:! AspLeuValGlu---------ArgThrGlyGluLysAspAspGlyProAspProLeuV 300392 : GATCTGGTGGAG---------AGGACGGGAGAGAAGGACGACGGTCCTGATCCTTTGG : 300442 259 : lyLysIleValArgHisHisLeuArgThrLeu{Se} >>>> Target Intron 1 : 269 ! ||||||||| !!|||:!!!:!..!|||{!!} 1110 bp alValIleValArgAspHisValLysValLeu{Ar}++ 300443 : TCGTTATCGTTCGAGATCACGTGAAGGTTTTA{AG}gt.................... : 300479 270 : >>>> {r}PheValThrGlyIleGluAsnValMetSerGlyIleCysPheMetGlu : 285 {!} ! ! !..!.!!... ! !! ! ! !:!!||| ::: ++{g}AspProCysSerPheArg***ProThrPheHisLeuCysAlaValIle 300480 : .....ag{A}GACCCGTGTTCCTTCCGTTAGCCAACTTTTCATCTCTGCgctgtaatt : 301633 286 : LeuPheLysCysThrValAsnIleCysMetLeuGlyTyrTyrIleLeuThrAlaTrpS : 305 |||::: |||:!!||| ! .!.||| !! ! !!!! !! !|||. LysPheGluSerThrLeuAsnAlaLysPheLeuArgValIle***Phe***GluTrpG 301634 : aaatttgaatctACTTTAAATGCAAAGTTTTTACGAGTAATTTGATTTTAGGAATGGC : 301693 306 : erValHisAspIleGlnAsnMetValValPheLeuValIleLeuLeuSerMetIlePh : 324 .! ! !|||! !|||:!!..!|||!!!..!:!:||| !|||.!.! !|| lnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPh 301694 : AAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTT : 301750 325 : eAsnIlePheIleIleCysTyrIleGlyAspIleLeuThrGluGln >>>> Targe : 340 |||||||||||||.!!||||||||||||!!:||||||:!!|||||| eAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301751 : CAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt.......... : 301800 341 : t Intron 2 >>>> CysLysMetIleGlyGluAlaValTyrMetThrAsnTrpTy : 353 80 bp |||!.....||||||..!||| !||| !! !:!!||||| ++CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTy 301801 : ...............agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTA : 301917 354 : rTyrLeuProGlyLysAspIleLeuAsnLeuValGlnIleIleLeuArgSerSerMet : 372 | !!||||||!.!||| !! !:!!|||:!!! !:!!! !:!!! !|||..! rAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyr 301918 : CAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTAT : 301974 373 : ValIleLysIleThrAlaGlyLysLeuValHisMetSerIleTyrThrPheGlyAsn : 392 ! |||:!!||||||||||||:!!:!! !!:!:|||:!: !!||||||.!!::! ProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSer+ 301975 : CCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTg : 302034 393 : >>>> Target Intron 3 >>>> ValMetLysThrAlaPheAlaTyrLeuAsn : 401 82 bp |||:!!||||||:!! ! !.!||||||||| + ++ValValLysThrSerValValTyrLeuAsn 302035 : t.........................agGTGGTGAAAACATCGGTGGTGTACTTGAAT : 302143 402 : LeuLeuArgGlnMetThr : 407 ||||||||| !:!:||| LeuLeuArgThrValThr 302144 : TTACTGCGAACAGTTACA : 302163 vulgar: AmOr32 180 407 . KQ414889.1 300219 302163 + 281 M 62 186 G 3 0 M 23 69 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 70 210 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300220 302163 281 + . gene_id 19 ; sequence AmOr32 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300220 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300220 300476 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302163 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302163 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300220 302163 281 + . alignment_id 19 ; Query AmOr32 ; Align 300220 181 186 ; Align 300406 246 69 ; Align 301588 270 210 ; Align 301878 340 156 ; Align 302116 392 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 275 Query range: 269 -> 395 Target range: 224140 -> 224667 270 : PheValThrGlyIleGluAsnValMetSerGlyIleCysPheMetGluLeuPheLysC : 289 |||:!!||| !! !|||!!.!.!:!!..! !:!!! |||:!!|||!!!.!. | PheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValGluPheLeuGlyC 224141 : TTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGGAATTTCTAGGCT : 224198 290 : ysThrValAsnIleCysMetLeuGlyTyrTyrIleLeuThr >>>> Target Int : 303 ||! !:!!|||||||||:!:||||||||||||:!!:!!..! 84 bp ysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleVal++ 224199 : GCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTGgt............... : 224242 304 : ron 1 >>>> AlaTrpSerValHisAspIleGlnAsnMetValValPheLeuValI : 318 |||||| !!:!! !:! !|||..!!:!!!!:!!: ++GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleL 224243 : ..........aggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATAC : 224369 319 : leLeuLeuSerMetIlePheAsnIlePheIleIleCysTyrIleGlyAspIleLeuTh : 337 !!|||:!!|||::: |||||||||||||||...||||||||||||!!::!::!!.! euLeuMetSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAl 224370 : TACTCATGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGC : 224426 338 : rGluGln >>>> Target Intron 2 >>>> CysLysMetIleGlyGluAlaV : 347 !|||||| 65 bp |||::: ||||||::!!.! aGluGln++ ++CysGluLysIleGlyGlnValS 224427 : TGAAcaggt.........................agtgtgaaaaaattggacaAGTGT : 224521 348 : alTyrMetThrAsnTrpTyrTyrLeuProGlyLysAspIleLeuAsnLeuValGlnIl : 366 !||||||! !:!!|||||| ||| !!|||!!. ! ! !||| !! !:!!! !|| erTyrMetIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIl 224522 : CGTACATGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGAT : 224578 367 : eIleLeuArgSerSerMetValIleLysIleThrAlaGlyLysLeuValHisMetSer : 385 |||| !! !|||!:! !||||||:!:|||||||||!!.:!!|||.!.:!!!!! eIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCys 224579 : AATCGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGT : 224635 386 : IleTyrThrPheGlyAsnValMetLysThr : 395 :!! !|||||||||:!!|||! ! ||| LeuThrThrPheGlyAspValSerIleThr 224636 : CTAACCACTTTCGGTGACGTAAGTATCACA : 224667 vulgar: AmOr32 269 395 . KQ414889.1 224140 224667 + 275 M 33 99 5 0 2 I 0 80 3 0 2 M 37 111 5 0 2 I 0 61 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224141 224667 275 + . gene_id 20 ; sequence AmOr32 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224141 224239 . + . KQ414889.1 exonerate:protein2genome:local exon 224141 224239 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224240 224241 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224240 224323 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224322 224323 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224667 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224667 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224141 224667 275 + . alignment_id 20 ; Query AmOr32 ; Align 224141 270 99 ; Align 224324 303 111 ; Align 224500 340 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 249 Query range: 16 -> 242 Target range: 204233 -> 204905 17 : AsnTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS : 36 !..|||:!!! !!::!!! !:! !.!!||| ! !:!!|||||||||||| ! ArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaTrpProIleP 204234 : AGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGTGGCCGATTC : 204291 37 : erProSerThrThrLysLeuGluLysIleIleSerIleValLeuIleIleCysCysTy : 55 !! !!:!:!!:!! !!!! !!:!:!!:!! !! !:!! ! !:!! ! !|| roValAsnSerSerProPheThrArgLeuValArgArgIleGluHisValValThrTy 204292 : CAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGTAGTCACCta : 204348 56 : rSerSerIleCysPheThrValIleProCysLeuLeuHisValMetLeuGluAspGlu : 74 | ... ... !:!!:!!||| !!||||||:!!|||.!.|||:!!!!::!! rPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheLeuLysGluLys 204349 : tttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAG : 204405 75 : SerPheArgAspLysLeuLysValLeuGlyProLeuSerHisTrpPheIleGlyAlaI : 94 !:! !!:! !:::||||||:!!|||||||||:!! !:!!!! !||| ! !. AsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSerIleGlnPheP 204406 : AACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCATACAGTTCT : 204465 95 : leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgTyrCysIleGluHisMe : 113 !!!!.|||:!!..!:!!|||! !|||! ! ! :!!|||!:! ! !!:!:.!. !!! heLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSerLeuAsnThrIl 204466 : TCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGTTTGAACACCAT : 204522 114 : tGlnArgAspTrpArgIleValThrArgThrGluAspGlnGlnIleMetMetLysHis : 132 :::!||||||||| |||! !.!!! ! !|||:!!!:! !|||.!. ..! ! eArgArgAspTrp---IleGluAlaThrAspGluAsnArgLeuIlePheArgSerLys 204523 : CAGACGCGACTGG---ATAGAGGCTACGGATGAAAATCGGTTGATTTTCCGCTCGAAA : 204576 133 : AlaLysIleGlyArgTyrIleAlaValPheSerAlaAlaPheMetGlnGlyGlyValL : 152 ||||||||||||||| :!: !:!!.!!:!!|||||| !||| ! ||||||! !| AlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetTyrGlyGlyGlyL 204577 : GCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGTACGGCGGTGGTT : 204636 153 : euSerAsnCysAlaValThrAlaPheSerThrGlnThrIleGluIleGlyAsnValTh : 171 ||!!! !! ! .!!:!! ! !!!!.! !! ! !|||||| :!! ! !! !!. euCysTyrArgThrIleLeuProLeuLeuArgGlyThrIle---ValThrProAspAs 204637 : TGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATC---GTAACACCTGATAA : 204690 172 : rLysThrIleHisMetIleProCysThrAlaTyrLysLysLeuIleAlaValAspThr : 190 ! ||||||... !:!:|||||| !!!.!||| ...... ! !.!. ! nValThrIleArgProLeuProCysProValTyrPheValPhePheAsnGluGlnArg 204691 : CGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaacGAGCAACGT : 204747 191 : SerProThrAsnGluIleValIleAlaSerGlnPheLeuSerGlyPheIleValAsnS : 210 ||||||!.! !!|||||||||.!! ! !|||.!!:!!:!!||||||:!!..! !!: SerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheValThrTyrA 204748 : TCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTGTTACTTACG : 204807 211 : erSerAlaValGlyAlaValSerIleAlaAlaValPheAlaAlaHisAlaCysGlyGl : 229 !! ! ! !|||.!! !.!!!!:..!|||:!!|||!.! !|||||||||.!!.. laValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAlaCysSerMe 204808 : CTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGCGTGCAGCAT : 204864 230 : nLeuSerLeuLeuMetValTrpIleArgGluPheValAsp : 242 !|||!!!:!!|||:!! ! !!!:!.!! !.!!|||||| tLeuArgIleLeuValAsnLysMetAsnAlaLeuValAsp 204865 : GCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGAT : 204905 vulgar: AmOr32 16 242 . KQ414889.1 204233 204905 + 249 M 101 303 G 1 0 M 47 141 G 1 0 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204234 204905 249 + . gene_id 21 ; sequence AmOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204234 204905 . + . KQ414889.1 exonerate:protein2genome:local exon 204234 204905 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 204234 204905 249 + . alignment_id 21 ; Query AmOr32 ; Align 204234 17 303 ; Align 204537 119 141 ; Align 204678 167 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 248 Query range: 338 -> 405 Target range: 264723 -> 265004 339 : GlnCysLysMetIleGlyGluAlaValTyrMetThrAsnTrpTyrTyrLeuProGlyL : 358 |||||||||! :!!||||||!.!|||||||||:!!|||||||||||||||||| !| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 359 : ysAspIleLeuAsnLeuValGlnIleIleLeuArgSerSerMetValIleLysIleTh : 377 |||||||||||:!!|||:!!! ||||||||||||||||||:!!|||.!!|||.!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 378 : rAlaGlyLysLeuValHisMetSerIleTyrThrPheGlyAsn >>>> Target I : 392 ||||||||||:!!:!!|||||||||!!:|||||||||.!!:!! 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 393 : ntron 1 >>>> ValMetLysThrAlaPheAlaTyrLeuAsnLeuLeuArgGln : 405 bp |||!!:|||:!!:!!|||.!!||||||||||||||||||||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArgGln 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGCCAA : 265004 vulgar: AmOr32 338 405 . KQ414889.1 264723 265004 + 248 M 53 159 5 0 2 I 0 76 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265004 248 + . gene_id 22 ; sequence AmOr32 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265004 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265004 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265004 248 + . alignment_id 22 ; Query AmOr32 ; Align 264724 339 159 ; Align 264963 392 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 231 Query range: 337 -> 397 Target range: 277548 -> 277728 338 : GluGlnCysLysMetIleGlyGluAlaValTyrMetThrAsnTrpTyrTyrLeuProG : 357 ..!|||||||||! :!!||||||!.!||||||||||||||||||||||||||||||! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 358 : lyLysAspIleLeuAsnLeuValGlnIleIleLeuArgSerSerMetValIleLysIl : 376 !||||||||||||||||||:!!! ||||||! !|||||||||:::||||||||||| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 377 : eThrAlaGlyLysLeuValHisMetSerIleTyrThrPheGlyAsnValMetLysThr : 395 ||||||||||||||||:::...||||||:!:||||||||||||:!!||| ..! ! eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspValArgSerLeu 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTACGTTCACTT : 277720 396 : AlaPhe : 397 !||| LeuPhe 277721 : CTTTTT : 277728 vulgar: AmOr32 337 397 . KQ414889.1 277548 277728 + 231 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277728 231 + . gene_id 23 ; sequence AmOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277549 277728 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277728 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277728 231 + . alignment_id 23 ; Query AmOr32 ; Align 277549 338 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 217 Query range: 15 -> 228 Target range: 194165 -> 194795 16 : SerAsnTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProP : 35 !!!.!.|||:!!:!!!:!:!! !:! !.!!|||! !||||||||| !|||||| ThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProA 194166 : ACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAA : 194223 36 : roSerProSerThrThrLysLeuGluLysIleIleSerIleValLeuIleIleCysCy : 54 !..! !||| ! ! ! !! ::!:!:.!!:!! !..! !:!::!! rgGluAspSerLeuArgAspArgValArgLeuPheAlaGlnThrGlyValVal----- 194224 : GGGAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTC----- : 194277 55 : sTyrSerSerIleCysPheThrValIleProCysLeuLeuHisValMetLeuGluAsp : 73 !:!:!!! !!!:|||||| !:!!:!!||| !:!!:!!:!!..! !!!!!: ! -PheAlaLeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCys 194278 : -TTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGC : 194331 74 : GluSerPheArgAspLysLeuLysValLeuGlyProLeuSerHisTrpPheIleGlyA : 93 |||..!.!.! ! ! :!!||||||:!!!.! !!! ! ! ! ! .!.:!:!.! GluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaI 194332 : GAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGA : 194391 94 : laIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgTyrCysIleGluHi : 112 !|||!!.!:! !|||:!!:!!:!!!.!!!!||||||||||||!:!|||:!: !.! leIleLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGl 194392 : TCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGA : 194448 113 : sMetGlnArgAspTrpArgIleValThrArgThrGluAspGlnGlnIleMetMetLys : 131 .|||:!!! !.!.!::||| !||| ! !! !||||||!:!|||:!:|||! !!!. uMetGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsn 194449 : GATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAAT : 194505 132 : HisAlaLysIleGlyArgTyrIleAlaValPheSerAlaAlaPheMetGlnGlyGlyV : 151 !|||||||||||||||!:!.!!.!!..!.!.! ! !!.!.!! ! ||||||! CysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyA 194506 : TGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCG : 194565 152 : alLeuSerAsnCysAlaValThrAlaPheSerThrGlnThrIleGluIleGlyAsnVa : 170 .!||| !! !! ! !:!! ! !!.!.! !:!!:!!! !||| :!! !.!.! laLeuProTyrHisIleIleLeuProLeuMetSerGluArgIle---ValLysGluAs 194566 : CTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATT---GTCAAGGAGGA : 194619 171 : lThrLysThrIleHisMetIleProCysThrAlaTyrLysLysLeuIleAlaValAsp : 189 !!.!!..||| :!:|||! ! !::! !! ! !!!.!!|||:!!!!: pAsnSerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGlu 194620 : TAACAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAA : 194676 190 : ThrSerProThrAsnGluIleValIleAlaSerGlnPheLeuSerGlyPheIleValA : 209 !||||||! ! !!||||||..!.!!!.!||||||.!.|||! !.!! !|||:!! AspSerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleL 194677 : GACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATAT : 194736 210 : snSerSerAlaValGlyAlaValSerIleAlaAlaValPheAlaAlaHisAlaCysGl : 228 |||!!! ! !||| ! !|||:!:!.!|||..!.!! ! !|||..!||||| euSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGl 194737 : TGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGG : 194793 229 : y : 228 | y 194794 : C : 194795 vulgar: AmOr32 15 228 . KQ414889.1 194165 194795 + 217 M 37 111 G 2 0 M 111 333 G 1 0 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194166 194795 217 + . gene_id 24 ; sequence AmOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194166 194795 . + . KQ414889.1 exonerate:protein2genome:local exon 194166 194795 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 194166 194795 217 + . alignment_id 24 ; Query AmOr32 ; Align 194166 16 111 ; Align 194277 55 333 ; Align 194610 167 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 203 Query range: 338 -> 395 Target range: 244655 -> 244826 339 : GlnCysLysMetIleGlyGluAlaValTyrMetThrAsnTrpTyrTyrLeuProGlyL : 358 |||||| !! :!!||||||!.!||||||||||||:!!||||||||||||||| !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 359 : ysAspIleLeuAsnLeuValGlnIleIleLeuArgSerSerMetValIleLysIleTh : 377 :! ||||||:!!|||:!!! !|||||| !||||||!:!||||||:!!:!!||||| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 378 : rAlaGlyLysLeuValHisMetSerIleTyrThrPheGlyAsnValMetLysThr : 395 ||||||||||:!!:!!|||||||||:!!||||||||||||:!!|||! :!!||| rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThr 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 244826 vulgar: AmOr32 338 395 . KQ414889.1 244655 244826 + 203 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244826 203 + . gene_id 25 ; sequence AmOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244826 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244826 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244826 203 + . alignment_id 25 ; Query AmOr32 ; Align 244656 339 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 195 Query range: 337 -> 397 Target range: 283273 -> 283453 338 : GluGlnCysLysMetIleGlyGluAlaValTyrMetThrAsnTrpTyrTyrLeuProG : 357 ..!|||||||||! :!!||||||!.!|||||||||||||||! !!:!|||||||||! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 358 : lyLysAspIleLeuAsnLeuValGlnIleIleLeuArgSerSerMetValIleLysIl : 376 !||||||||||||||||||:!!! ||||||! !|||||||||:::||||||||||| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 377 : eThrAlaGlyLysLeuValHisMetSerIleTyrThrPheGlyAsnValMetLysThr : 395 |||||||...||||||:::...|||||| |||||||||! !:!!||| ..! ! eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspValArgSerLeu 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTACGTTCACTT : 283445 396 : AlaPhe : 397 !||| LeuPhe 283446 : CTTTTT : 283453 vulgar: AmOr32 337 397 . KQ414889.1 283273 283453 + 195 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283453 195 + . gene_id 26 ; sequence AmOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283453 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283453 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283453 195 + . alignment_id 26 ; Query AmOr32 ; Align 283274 338 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 181 Query range: 12 -> 116 Target range: 299674 -> 299989 13 : AsnAsnLeuSerAsnTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyA : 32 .!.||| !! !:!!|||!!!:!:|||:!! !!:!|||!!.|||||||||||||||! GlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyV 299675 : CAAAATGACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAG : 299732 33 : laTrpPro<->ProSerProSerThrThrLysLeuGluLysIleIleSerIleValLe : 50 .!|||! ! ! !..!! ! !!:!!!:!||||||||| ! :!!:!!||||||||||| alTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuValSerIleValLe 299733 : TATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCT : 299789 51 : uIleIleCysCysTyrSerSerIleCysPheThrValIleProCysLeuLeuHisVal : 69 |!!:! ! |||!:!||||||:!:! !|||! !|||:!:|||! ! !! !:!!:!! uMetThrIleCysPheSerSerLeuPhePheIleValLeuProSerGlyHisTyrIle 299790 : CATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATC : 299846 70 : MetLeuGluAspGluSerPheArgAspLysLeuLysValLeuGlyProLeuSerHisT : 89 .!.!!!! !!!::!!|||.!.!.!! !|||:!!||||||!!!||||||:!!.!! !! PhePheAlaGluLysSerIleHisValLysValLysValPheGlyProValGlyPheC 299847 : TTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTT : 299906 90 : rpPheIleGlyAlaIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgTy : 108 ! .!! !..! !:!!!!.||| ! !|||! !|||!.!.!! ! !.!!..! ysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluAr 299907 : GCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACG : 299963 109 : rCysIleGluHisMetGlnArgAsp : 116 ||||||:!!|||:!::!!|||||| gCysIleGlnHisValGluArgAsp 299964 : ATGCATCCAACACGTCGAGAGAGAC : 299989 vulgar: AmOr32 12 116 . KQ414889.1 299674 299989 + 181 M 22 66 G 0 3 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299675 299989 181 + . gene_id 27 ; sequence AmOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299675 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299675 299989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299675 299989 181 + . alignment_id 27 ; Query AmOr32 ; Align 299675 13 66 ; Align 299744 35 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 173 Query range: 268 -> 339 Target range: 263671 -> 264648 269 : SerPheValThrGlyIleGluAsnValMetSerGlyIleCysPheMetGluLeuPheL : 288 ||||||:!! ! !!|||:!!|||||||||||| !|||||||||:!!|||||||||| SerPheIleAspArgIleLysAsnValMetSerThrIleCysPheValGluLeuPheL 263672 : AGTTTCATAGATCGTATTAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCA : 263729 289 : ysCysThrValAsnIleCys{Me} >>>> Target Intron 1 >>>> {t}Le : 296 ||..!|||:!!:!!||||||{!!} 764 bp {:}:! ysAlaThrLeuAspIleCys{Il}+- +-{e}Il 263730 : AGGCTACGCTGGATATATGC{AT}gc.........................aa{T}AT : 264517 297 : uGlyTyrTyrIleLeuThrAlaTrpSerValHisAspIleGlnAsnMetValValPhe : 315 ! ! ! !!:!!!!! !! !|||..! !|||||||||||||||:::..!..!!:! eThrIleAspValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyr 264518 : AACAATTGACGTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATAT : 264574 316 : LeuValIleLeuLeuSerMetIlePheAsnIlePheIleIleCysTyrIleGlyAspI : 335 !!!:!!||||||:!!|||||| ! !|||||||||:!!!!:||||||||||||!!:| PheMetIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluI 264575 : TTCATGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGA : 264634 336 : leLeuThrGluGln : 339 |||||||||||||| leLeuThrGluGln 264635 : TATTGACTGAGcag : 264648 vulgar: AmOr32 268 339 . KQ414889.1 263671 264648 + 173 M 26 78 S 0 2 5 0 2 I 0 760 3 0 2 S 1 1 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 263672 264648 173 + . gene_id 28 ; sequence AmOr32 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 263672 263751 . + . KQ414889.1 exonerate:protein2genome:local exon 263672 263751 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263752 263753 . + . intron_id 1 ; splice_site "GC" KQ414889.1 exonerate:protein2genome:local intron 263752 264515 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264514 264515 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 264516 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264516 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 263672 264648 173 + . alignment_id 28 ; Query AmOr32 ; Align 263672 269 78 ; Align 264517 296 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 303 -> 392 Target range: 206053 -> 206401 304 : TrpSerValHisAspIleGlnAsnMetValValPheLeuValIleLeuLeuSerMetI : 323 |||..! !:!!:!!! ! ! :!::!!|||!:!:!!..!:!:! !:!!||| ! TrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerCysT 206054 : TGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTTGTA : 206111 324 : lePheAsnIlePheIleIleCysTyrIleGlyAspIleLeuThrGluGln >>>> T : 340 !||| !:!!||||||:!!||||||||||||.!.:!!|||! !!!:||| hrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206112 : CATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt...... : 206164 341 : arget Intron 1 >>>> CysLysMetIleGlyGluAlaValTyrMetThrAsnT : 352 81 bp ! ! :!::!:||| !.!! !! !! !..!|||| ++AsnHisValValGlyLeuThrSerCysThrValAsnT 206165 : ...................agAACCACGTCGTGGGATTGACATCTTGCACGGTGAATT : 206279 353 : rpTyrTyrLeuProGlyLysAspIleLeuAsnLeuValGlnIleIleLeuArgSerSe : 371 ||||| !||||||..!!:! !! ! !::!:!!:!!! !|||||| !! !|||!: rpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSerAs 206280 : GGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTCTAA : 206336 372 : rMetValIleLysIleThrAlaGlyLysLeuValHisMetSerIleTyrThrPheGly : 390 ! !||||||:!!||||||||||||:!! !!.!.||||||:!! !!:!||| ! nTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPheThr 206337 : TTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTCACC : 206393 391 : AsnVal : 392 :!!||| AspVal 206394 : GATGTA : 206401 vulgar: AmOr32 303 392 . KQ414889.1 206053 206401 + 156 M 36 108 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206054 206401 156 + . gene_id 29 ; sequence AmOr32 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206054 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206054 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206054 206401 156 + . alignment_id 29 ; Query AmOr32 ; Align 206054 304 108 ; Align 206243 340 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 303 -> 339 Target range: 277374 -> 277482 304 : TrpSerValHisAspIleGlnAsnMetValValPheLeuValIleLeuLeuSerMetI : 323 ||||||! ! !|||:!!|||!..|||..!..! !!!!:!!||||||:!!|||||| TrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerMetC 277375 : TGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCATgt : 277432 324 : lePheAsnIlePheIleIleCysTyrIleGlyAspIleLeuThrGluGln : 339 |||||||||||| !:!!||||||||||||!!:||||||||||||||| ysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln 277433 : gtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAG : 277482 vulgar: AmOr32 303 339 . KQ414889.1 277374 277482 + 123 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277375 277482 123 + . gene_id 30 ; sequence AmOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277375 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277375 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277375 277482 123 + . alignment_id 30 ; Query AmOr32 ; Align 277375 304 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 339 -> 392 Target range: 219512 -> 219671 340 : CysLysMetIleGlyGluAlaValTyrMetThrAsnTrpTyrTyrLeuProGlyLysA : 359 |||::: ||||||||| !||||||! !.!.|||||| ||| !!|||||| CysArgLysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysL 219513 : TGtaggaaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGA : 219570 360 : spIleLeuAsnLeuValGlnIleIleLeuArgSerSerMetValIleLysIleThrAl : 378 ! ! ||| !||| !! !||| !! !|||!:! !||||||:!:||||| ysLysLeuTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAl 219571 : AAAAGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGC : 219627 379 : aGlyLysLeuValHisMetSerIleTyrThrPheGlyAsnVal : 392 ||||!!.:!!|||.!.:!!|||||| !|||||| !:!!||| aGlyAsnMetValGluLeuSerIleSerThrPheThrAspVal 219628 : CGGAAATATGGTCGAATTGTCTATCAGCACTTTTACCGACGTG : 219671 vulgar: AmOr32 339 392 . KQ414889.1 219512 219671 + 116 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219513 219671 116 + . gene_id 31 ; sequence AmOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219513 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219513 219671 116 + . alignment_id 31 ; Query AmOr32 ; Align 219513 340 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 303 -> 339 Target range: 219331 -> 219439 304 : TrpSerValHisAspIleGlnAsnMetValValPheLeuValIleLeuLeuSerMetI : 323 |||!.! !:!!|||:!! !!:! |||..!!:!:!!:!!:!!|||:!!|||:!: TrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerLeuT 219332 : TGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCCTca : 219389 324 : lePheAsnIlePheIleIleCysTyrIleGlyAspIleLeuThrGluGln : 339 |||||||||||||||...||||||||||||!!:|||:!!.!!|||||| hrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln 219390 : ctttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: AmOr32 303 339 . KQ414889.1 219331 219439 + 112 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219332 219439 112 + . gene_id 32 ; sequence AmOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219332 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219332 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219332 219439 112 + . alignment_id 32 ; Query AmOr32 ; Align 219332 304 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 298 -> 339 Target range: 210651 -> 210774 299 : TyrIleLeuThrAlaTrpSerValHisAspIleGlnAsnMetValValPheLeuValI : 318 !:!:!!||| !! !|||..! ! ! ||| ! !:!! :!!..!!:!:!!|||: PheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValL 210652 : TTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTAC : 210709 319 : leLeuLeuSerMetIlePheAsnIlePheIleIleCysTyrIleGlyAspIleLeuTh : 337 !!||| !|||:!:! |||||||||||||||.!!||||||||||||!!::!:|||.! euLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAl 210710 : TCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGC : 210766 338 : rGluGln : 339 !|||||| aGluGln 210767 : TGAACAg : 210774 vulgar: AmOr32 298 339 . KQ414889.1 210651 210774 + 102 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210652 210774 102 + . gene_id 33 ; sequence AmOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 210652 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210652 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210652 210774 102 + . alignment_id 33 ; Query AmOr32 ; Align 210652 299 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1484 Query range: 0 -> 394 Target range: 303127 -> 305783 1 : MetHisLeuThrIleLeuAsnGluSerAspTyrArgAlaArgAsnLeuLysTyrLysG : 20 |||||||||:!!!!:! !.!.:!!! !||| !:! !!|||||||||!!.||||||: MetHisLeuSerMetArgGluGlnIleAspArgLysProArgAsnLeuAsnTyrLysL 303128 : ATGCATCTCTCTATGCGAGAGCAGATCGATCGGAAACCGCGGAATTTGAATTACAAGA : 303185 21 : luAspIleAlaTyrValThrLysHisSerLysTrpIleLeuLysSerIleGlyIleTr : 39 !!||||||!.!||||||||||||||||||||||||||||||||||||:!!|||||||| ysAspIleValTyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTr 303186 : AAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTG : 303242 40 : pProIleIleLeuLysAspValAlaLysPheLeuProLysIleValIleGlyIleSer : 58 |||| !:!:||| ! !!:..!||| !|||||||||||||||..!||||||:!!||| pProAlaValLeuAspGluThrAlaGlyPheLeuProLysIleThrIleGlyLeuSer 303243 : GCCAGCCGTGTTGGACGAAACCGCAGGATTCCTACCAAAAATCACCATTGGACTCAGT : 303299 59 : AsnPheValLeuLeuPheAlaIleIleProCysIleLeuTyrIleIleLeuGluGluL : 78 |||!!.||||||||||||.!!:!:|||||||||||||||:!!||||||!!!|||:!!| AsnLeuValLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnL 303300 : AATTTGGTTCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAA : 303359 79 : ysAsnAsnLeuIleLysLeuLysLeuPheGlyLeuLeuMetPheCysSerIleAlaLe : 97 ||:!!!..:!!|||!:!|||||||||||||||||||||! ||||||! !|||:!!|| ysAspThrIleIleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLe 303360 : AGGATACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTT : 303416 98 : uMetLysHisTrpAlaLeuAlaTyrArgLysProLysIleLysAsnCysIleGluGln : 116 |||||||:!!|||||||||||| |||||||||!:!||||||.!.|||||||||:!! uMetLysTyrTrpAlaLeuAlaThrArgLysProArgIleLysGluCysIleGluGlu 303417 : GATGAAGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAG : 303473 117 : IleGlnAsnAspTrpGluGln >>>> Target Intron 1 >>>> ValLysLe : 126 :!:|||!:!||||||:!!:!! 938 bp |||:!!! ValGlnSerAspTrpLysGlu++ ++ValGluSe 303474 : GTGCAAAGTGATTGGAAAGAGgt.........................agGTGGAATC : 304441 127 : uTyrGluAspArgGluMetMetLeuLysTyrGlyGlnValGlyArgAsnLeuThrIle : 145 ! !..!||||||||||||||||||||||||||||||:!!|||||||||||||||||| rLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIle 304442 : TCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATA : 304498 146 : IleCysAlaValPheMetTyrThrGlyGlyIleIleTyrHisThrIleLeuGlnTyrG : 165 |||||||||:!!||||||||||||||||||! !||||||||||||:!!:!!|||!:!! IleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheA 304499 : ATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCG : 304558 166 : luIleGlyThrPheIleAspGluTyrAsnHisThrIleLysProValIleTyrProTh : 184 !! !||||||!:!:!:||||||||||||!.!||||||||||||:!!:!!|||||||| laThrGlyThrTyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProTh 304559 : CGACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCAC : 304615 185 : rTyrSerGlyLeuPheAsnValGlnLysSerProIleTyrGluLeuIleTyrValLeu : 203 |||||||!.!||||||:!!||||||! !||||||||||||||||||:!!||| !!:!! rTyrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheVal 304616 : CTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTT : 304672 204 : HisCysThrCysGlyTyrValMetTyrSerIleThrAlaGlyAlaCysGlyLeuAlaA : 223 ||||||! !||||||||||||!!:|||||||||||||||||||||||||||||||||| HisCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaA 304673 : CATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCG : 304732 224 : laLeuPheValThrHisAlaCysGlyGlnIleAspIleValIleAlaArgLeuAsnAs : 242 ||||||||!.!||||||||||||||||||||||||||||||!!::!!||||||..!|| laLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAs 304733 : CTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGA : 304789 243 : pLeuValHisAlaLysTyrGlyLysGlyLysPheAsnLeuAsnAlaArgLeuIleLys : 261 |||||||:!!::!||| ! ..!... :!!|||:!! !|||||||||:!! pLeuValAsnSerLysGluSerSer---------AspLeuAspLysArgLeuIleGlu 304790 : TCTTGTCAACAGCAAAGAATCATCT---------GATTTAGATAAACGATTAATAGAA : 304837 262 : IleValGluHisHisLeuGlnIleLeu{Ar} >>>> Target Intron 2 >>>> : 271 ||||||||||||||||||!:!||||||{||} 70 bp IleValGluHisHisLeuArgIleLeu{Ar}++ 304838 : ATTGTTGAGCATCATTTGCGAATTTTA{AG}gt......................... : 304871 272 : {g}PheSerAlaThrValGlnValIleLeuGlnGluValCysPheLeuGluPheIl : 289 {|}|||||||||! !||||||..!:!:||||||||||||||||||||||||||||| ++{g}PheSerAlaIleValGlnThrValLeuGlnGluValCysPheLeuGluPheIl 304872 : ag{A}TTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTTCTTGGAATTCAT : 304991 290 : eGlySerIlePheLeuIleCysLeuLeuGluTyrTyrCysIleThr >>>> Targe : 305 |||||||! !!!.||||||||||||||||||||||||||||||||| eGlySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysIleThr++ 304992 : TGGTTCTACCTTACTGATATGTCTACTTGAATACTACTGTATAACGgt.......... : 305041 306 : t Intron 3 >>>> AspTrpGluLeuLysAsnThrIleSerLeuThrThrTyrIl : 318 62 bp ||||||||| !!..||||||:!!|||||||||||||||! ++AspTrpGluSerSerAsnThrValSerLeuThrThrTyrTh 305042 : ...............agGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATAC : 305140 319 : eIleLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeu : 337 !:!:||||||||||||:!!||||||||||||||||||||||||||||||||||||:!! rValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIle 305141 : AGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATT : 305197 338 : LeuMetGluLys >>>> Target Intron 4 >>>> SerSerSerIleGlyLe : 347 |||||||||||| 413 bp |||||||||:!!||||| LeuMetGluLys++ ++SerSerSerValGlyLe 305198 : CTTATGGAAAAGgt.........................agAGCAGTAGCGTTGGATT : 305640 348 : uSerCysPheMetIleAspTrpTyrHisLeuProValLysThrIleGlnGlyLeuIle : 366 ||||||||||||||||..!|||||||||||||||..!|||||||||!!.||||||||| uSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIle 305641 : ATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATT : 305697 367 : LeuIleIleAlaIleSerAsnSerProThrLysIleSerAlaGlyGlyIleValAspL : 386 ||||||||||||!!:|||!:!!:!|||.!!||||||||||||||| !:!!||||||| LeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysValValAspL 305698 : TTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATT : 305757 387 : euSerLeuPheThrPheAlaAsnIle : 394 ||||||||! !||||||!.!|||:!: euSerLeuSerThrPheGlyAsnVal 305758 : TATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: AmOr60 0 394 . KQ414889.1 303127 305783 + 1484 M 123 369 5 0 2 I 0 934 3 0 2 M 127 381 G 3 0 M 17 51 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 37 111 5 0 2 I 0 409 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303128 305783 1484 + . gene_id 1 ; sequence AmOr60 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303128 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303128 303496 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304868 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 2 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303128 305783 1484 + . alignment_id 1 ; Query AmOr60 ; Align 303128 1 369 ; Align 304435 124 381 ; Align 304816 254 51 ; Align 304940 272 99 ; Align 305101 305 111 ; Align 305625 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 728 Query range: 17 -> 406 Target range: 278558 -> 280542 18 : TyrLysGluAspIleAlaTyrValThrLysHisSerLysTrpIleLeuLysSerIleG : 37 !::!!. !||| !||| !..!:!! !:!:::|||.!!|||||| !!|||| TrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleG 278559 : TGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTG : 278616 38 : lyIleTrpProIleIleLeu<-><->LysAspValAlaLysPheLeuProLysIleVa : 54 ||:!!||||||:!!! !||| ! !:!!! !|||.!! ! !! !:!!:! lyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLe 278617 : GCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCT : 278673 55 : lIleGlyIleSerAsnPheValLeuLeuPheAlaIleIleProCysIleLeuTyrIle : 73 ! !|||||| !|||:!!:!! !||| !:!::!!|||||| !|||! !! ! uAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThr 278674 : CGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACA : 278730 74 : IleLeuGluGluLysAsnAsnLeu<->IleLysLeuLysLeuPheGlyLeuLeuMetP : 92 :!:|||!!::!!! ..!:!!||| ! |||:!!|||:!!.!!|||! !|||! | ValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerP 278731 : GTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTT : 278790 93 : heCysSerIleAlaLeuMetLysHisTrpAlaLeuAlaTyrArgLysProLysIleLy : 111 |||||!!!!!:||| !!!:|||:!!!:: !||| !! ||| !|||||| heCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGl 278791 : TCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGG : 278847 112 : sAsnCysIleGluGlnIleGlnAsnAspTrpGluGlnValLysLeuTyr<-><-><-> : 128 !!.|||:!:.!..!.|||!::!..||||||...! ..! ! !||| yLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGlu 278848 : CAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaa : 278904 129 : GluAspArgGluMetMetLeuLysTyrGlyGlnValGlyArgAsnLeuThrIleIleC : 147 |||:::||||||:::||| ! ! !!.!::!:!!||||||::!|||.!!|||.!! GluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheS 278905 : gaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCA : 278964 148 : ysAlaValPheMetTyrThrGlyGlyIleIleTyrHisThrIleLeuGlnTyrGluIl : 166 !!|||! !|||||||||:!!||||||:!!.!!||| !.!!:!::!!! !! erAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAl 278965 : GCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGC : 279021 167 : eGlyThrPheIleAspGluTyrAsnHisThrIleLysProValIleTyrProThrTyr : 185 !! ! ! ! !!|||.!.|||:!:!:! !! ! !:!|||! !||| aValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyr 279022 : AGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTAT : 279078 186 : SerGlyLeuPheAsnValGlnLysSerProIleTyrGluLeuIleTyrValLeuHisC : 205 !!||||||.!!:!! !!::! |||||| !:!|||:!!:!: ! !!:!!!!.| ArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnC 279079 : CGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAAT : 279138 206 : ysThrCysGlyTyrValMetTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLe : 224 || !..!!.!!:!|||:!:||||||:!!|||!.!|||||||||.!!||| !|||:! ysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaVa 279139 : GCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGT : 279195 225 : uPheValThrHisAlaCysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeu : 243 !||||||! !|||!.!|||||||||.!! |||:!!:!:.!!!:!|||:!! ! ||| lPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeu 279196 : GTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTC : 279252 244 : ValHisAlaLysTyrGlyLysGlyLysPheAsnLeuAsn<->AlaArgLeuIleLysI : 262 :!! !!!.! ! ! |||!:! !!..!!.!:! !:!! !|||||| ! ! | IleAspGlyValLysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspI 279253 : ATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATA : 279312 263 : leValGluHisHisLeuGlnIleLeu{Ar} >>>> Target Intron 1 >>>> : 271 ||:!!||||||||||||:!!||||||{ !} 571 bp leIleGluHisHisLeuLysIleLeu{Gl}++ + 279313 : TCATCGAGCATCATCTGAAGATACTG{GG}gt.........................a : 279910 272 : {g}PheSerAlaThrValGlnValIleLeuGlnGluValCysPheLeuGluPheIle : 289 {!}|||! !:!! !:!!:!!! !:!!|||.!.|||:!!||||||:!!||| ! ||| +{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValIle 279911 : g{T}TTTATATCGCAAATCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTGATT : 279964 290 : GlySerIlePheLeuIleCysLeuLeuGluTyrTyrCysIleThr >>>> Target : 305 |||!!!! !!. !||||||!!!||| !||||||! :!!||| 8 GlyCysThrLeuAsnIleCysPheLeuThrTyrTyrLeuLeuThr++ 279965 : GGTTGCACGTTGAACATATGCTTTTTGACATATTATTTACTCACGgt........... : 280014 306 : Intron 2 >>>> AspTrpGluLeuLysAsnThrIleSerLeuThrThrTyrIle : 318 0 bp !!:||||||! !!!.:!!.!!|||.!! ! !||||||:!! ++GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeu 280015 : ..............agGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTA : 280131 319 : IleLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuL : 338 !!:!!!|||||||||||||||||||||:!!||||||||||||||||||||||||:!!| MetPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleL 280132 : ATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTC : 280191 339 : euMetGluLys >>>> Target Intron 3 >>>> SerSerSerIleGlyLeu : 347 || |||::: 74 bp !!!! !!.!:!!|||:!! euSerGluGln++ ++CysLeuLysValGlyVal 280192 : TCTCCGAACaggt.........................agTGCTTAAAAGTCGGCGTG : 280292 348 : SerCysPheMetIleAspTrpTyrHisLeuProValLysThrIleGlnGlyLeuIleL : 367 ||| !!:!|||||||||||||||!.!||||||! !|||! ! !||||||||||||| SerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleL 280293 : TCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATAC : 280352 368 : euIleIleAlaIleSerAsnSerProThrLysIleSerAlaGlyGlyIleValAspLe : 386 |||||.!!|||:!:||||||||| !!! !|||:!!!!!|||||| !|||:!!||||| euIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLe 280353 : TGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCT : 280409 387 : uSerLeuPheThrPheAlaAsn >>>> Target Intron 4 >>>> IleLeuL : 396 ||||||| !!:!|||..!!:! 71 bp :!:|||| uSerLeuSerSerPheCysSer++ ++ValLeuL 280410 : CTCTTTAAGCAGCTTCTGCAGCgt.........................agGTGTTAA : 280510 397 : ysThrSerPheValTyrLeuAsnPheIleArg : 406 |||||:!!|||!.!||||||!:!!!.:!!||| ysThrAlaPheAlaTyrLeuSerLeuLeuArg 280511 : AAACGGCATTCGCATATCTGAGCTTATTACGT : 280542 vulgar: AmOr60 17 406 . KQ414889.1 278558 280542 + 728 M 26 78 G 0 6 M 38 114 G 0 3 M 46 138 G 0 9 M 129 387 G 0 3 M 14 42 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278559 280542 728 + . gene_id 2 ; sequence AmOr60 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278559 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278559 279340 . + . insertions 21 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280542 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280542 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278559 280542 728 + . alignment_id 2 ; Query AmOr60 ; Align 278559 18 78 ; Align 278643 44 114 ; Align 278760 82 138 ; Align 278907 128 387 ; Align 279297 257 42 ; Align 279913 272 99 ; Align 280092 305 111 ; Align 280277 342 156 ; Align 280504 394 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 711 Query range: 17 -> 394 Target range: 284505 -> 287222 18 : TyrLysGluAspIleAlaTyrValThrLysHisSerLysTrpIleLeuLysSerIleG : 37 !:: ! !||| !||| !..!:!! !:!:::|||.!!|||||| !!|||| TrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleG 284506 : TGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTG : 284563 38 : lyIleTrpProIleIleLeu<-><->LysAspValAlaLysPheLeuProLysIleVa : 54 ||:!!||||||:!!! !||| ! !:!!! !|||.!! ! !! !:!!:! lyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLe 284564 : GCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCT : 284620 55 : lIleGlyIleSerAsnPheValLeuLeuPheAlaIleIleProCysIleLeuTyrIle : 73 ! !|||||| !|||:!!:!! !||| !:!::!!|||||| !|||! !! ! uAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThr 284621 : CGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACA : 284677 74 : IleLeuGluGluLysAsnAsnLeu<->IleLysLeuLysLeuPheGlyLeuLeuMetP : 92 :!:|||!!::!!! ..!:!!||| ! |||:!!|||:!!.!!|||! !|||! | ValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerP 284678 : GTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTT : 284737 93 : heCysSerIleAlaLeuMetLysHisTrpAlaLeuAlaTyrArgLysProLysIleLy : 111 |||||! !!!:||| !!!:|||:!!!:: !||| !! ||| !|||||| heCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGl 284738 : TCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGG : 284794 112 : sAsnCysIleGluGlnIleGlnAsnAspTrpGluGlnValLysLeuTyr<-><-><-> : 128 .!.|||:!::!!.!.|||!:: ||||||...! ..! ! !:!! yGlnCysValLysAspIleArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGlu 284795 : CCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaa : 284851 129 : GluAspArgGluMetMetLeuLysTyrGlyGlnValGlyArgAsnLeuThrIleIleC : 147 |||:::||||||:::||| ! ! !!.!::!:!!||||||::!|||.!!|||.!!| GluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheC 284852 : gaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCT : 284911 148 : ysAlaValPheMetTyrThrGlyGlyIleIleTyrHisThrIleLeuGlnTyrGluIl : 166 |||||! !|||||||||:!!||||||.!!.!!||| !|||:!::!!! !! ! ysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysTh 284912 : GCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCAC : 284968 167 : eGlyThrPheIleAspGluTyrAsnHisThrIleLysProValIleTyrProThrTyr : 185 !! ! ! ! !!|||.!.|||:!:!:! !! ! !:!|||! !||| rValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyr 284969 : AGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTAT : 285025 186 : SerGlyLeuPheAsnValGlnLysSerProIleTyrGluLeuIleTyrValLeuHisC : 205 !!||||||.!!:!! !!::! |||||| !:!|||:!!:!: ! !!:!!!!.| ArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnC 285026 : CGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAAT : 285085 206 : ysThrCysGlyTyrValMetTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLe : 224 || !..!!.!!:!|||!!:||||||:!!|||!.!|||||||||.!!|||||||||:! ysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaVa 285086 : GCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGT : 285142 225 : uPheValThrHisAlaCysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeu : 243 !||||||! !|||!.!|||||||||.!! |||:!!:!:.!!!:!|||:!! ! ||| lPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeu 285143 : GTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTC : 285199 244 : ValHisAlaLysTyrGly<->LysGlyLysPheAsnLeuAsnAlaArgLeuIleLysI : 262 ||| !!!.! ! ! ||| |||||| ! !!..! !.!. !|||||| ! ! | ValAspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspI 285200 : GTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATA : 285259 263 : leValGluHisHisLeuGlnIleLeu{Ar} >>>> Target Intron 1 >>>> : 271 ||:!!||||||||||||:!!||||||{ !} 1411 bp leIleGluHisHisLeuLysIleLeu{Gl}++ + 285260 : TCATCGAGCATCATCTGAAGATACTG{GG}gt.........................a : 286697 272 : {g}PheSerAlaThrValGlnValIleLeuGlnGluValCysPheLeuGluPheIle : 289 {!}|||! !:!! !:!!:!!! !:!!|||.!.|||:!!||||||:!!||| ! ||| +{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValIle 286698 : g{T}TTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATT : 286751 290 : GlySerIlePheLeuIleCysLeuLeuGluTyrTyrCysIleThr >>>> Target : 305 |||!!!! !!. !||||||!!!|||! !||||||! :!:||| 8 GlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeuThr++ 286752 : GGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTACTGACGgt........... : 286801 306 : Intron 2 >>>> AspTrpGluLeuLysAsnThrIleSerLeuThrThrTyrIle : 318 0 bp !!:||||||! !!...!.||||||.!! !! !|||||| ! ++GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCys 286802 : ..............agGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGC : 286918 319 : IleLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuL : 338 ! ||||||:!!|||!!!|||||||||:!!||||||||||||||||||||||||:!!| ThrLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleL 286919 : ACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTC : 286978 339 : euMetGluLys >>>> Target Intron 3 >>>> SerSerSerIleGlyLeu : 347 || |||::: 74 bp !!! !!.!:!!|||||| euSerGluGln++ ++CysLeuLysValGlyLeu 286979 : TCTCCGAACaggt.........................agtGCTTAAAAGTCGGCTTG : 287079 348 : SerCysPheMetIleAspTrpTyrHisLeuProValLysThrIleGlnGlyLeuIleL : 367 ||| !!:!|||||||||||||||!.!||||||! !|||||| !||||||||||||| SerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleL 287080 : TCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATAC : 287139 368 : euIleIleAlaIleSerAsnSerProThrLysIleSerAlaGlyGlyIleValAspLe : 386 |||||.!!|||:!:||||||||| !!! !|||:!!!!!|||||| !|||:!!||||| euIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLe 287140 : TGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCT : 287196 387 : uSerLeuPheThrPheAlaAsnIle : 394 ||||||| !!:!|||..!!:!:!: uSerLeuSerSerPheCysSerVal 287197 : CTCTTTAAGCAGCTTCTGCAGCGTG : 287222 vulgar: AmOr60 17 394 . KQ414889.1 284505 287222 + 711 M 26 78 G 0 6 M 38 114 G 0 3 M 46 138 G 0 9 M 122 366 G 0 3 M 21 63 S 0 2 5 0 2 I 0 1407 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284506 287222 711 + . gene_id 3 ; sequence AmOr60 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284506 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284506 285287 . + . insertions 21 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286698 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287222 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287222 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284506 287222 711 + . alignment_id 3 ; Query AmOr60 ; Align 284506 18 78 ; Align 284590 44 114 ; Align 284707 82 138 ; Align 284854 128 366 ; Align 285223 250 63 ; Align 286700 272 99 ; Align 286879 305 111 ; Align 287064 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 597 Query range: 17 -> 403 Target range: 226912 -> 230433 18 : TyrLysGluAspIleAlaTyrValThrLysHisSerLysTrpIleLeuLysSerIleG : 37 |||:!!||| !!:!: ! !! !:!! !:!:::|||:!:|||||| !!:!!| TyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuG 226913 : TATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCG : 226970 38 : lyIleTrpProIleIleLeuLysAsp<-><->ValAlaLysPheLeuProLysIleVa : 54 ||||||||||| ! !|||..! :!!!.!!:!! !!!! !! !:!::! lyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMe 226971 : GTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGAT : 227027 55 : lIleGlyIleSerAsnPheValLeuLeuPheAlaIleIleProCysIleLeuTyrIle : 73 ! ! !:!!!!! !! :!!:!! !|||! !:!::!! !! !! !||||||:!: tGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrVal 227028 : GGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTG : 227084 74 : IleLeuGluGluLysAsnAsnLeuIleLysLeuLysLeuPheGlyLeuLeuMetPheC : 93 :!!||||||! !|||..! !! !! !! !||||||:!!.!!|||! !:!! |||! ValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPheP 227085 : GTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCT : 227144 94 : ysSerIleAlaLeuMetLysHisTrpAlaLeuAlaTyrArgLysProLysIleLysAs : 112 !:!!!!::!!|||:!:|||:!!! !|||.!!!:!!.!:!! ! ! ||| .! heAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGl 227145 : TCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGA : 227201 113 : nCysIleGluGlnIleGlnAsnAspTrpGluGlnValLysLeuTyrGluAspArgGlu : 131 .|||:!!|||!:!|||:!! ||||||:!!.!.:!!!:!! ! |||||||||.!. uCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsn 227202 : GTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAAC : 227258 132 : MetMetLeuLysTyrGlyGlnValGlyArgAsnLeuThrIleIleCysAlaValPheM : 151 :!!|||:!!! !|||!.! ! !||||||!!.|||! !! !||||||.!! !!|||: ValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheV 227259 : GTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCG : 227318 152 : etTyrThrGlyGlyIleIleTyrHisThrIleLeuGlnTyrGluIleGlyThrPhe<- : 170 !:!:!!::... :::...::::::! !:!!:!!! !.!. !|||!:! !! alPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerValAl 227319 : TCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGC : 227375 171 : >IleAspGluTyrAsnHisThrIleLysProValIleTyrProThrTyrSerGlyLeu : 188 ! !!:!!: ||||||!:! !! ! !:!! !:!||| ! !.! !:!! aThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIleIle 227376 : AACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATC : 227432 189 : PheAsnValGlnLysSerProIleTyrGluLeuIleTyrValLeuHisCysThrCysG : 208 !:!!|||!:: ! ||||||.!! !!|||:!!.!!!:! !:!!!!.! !..! | AlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValThrG 227433 : GCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAG : 227492 209 : lyTyrValMetTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheValTh : 227 || !|||:!!:!!.!!:!!|||:!!!.!||||||.!!:!!|||||||||.!!!.!.. lyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaVa 227493 : GTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGT : 227549 228 : rHisAlaCysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeuValHisAla : 246 !|||||||||||||||!!:!!::!::!!:!::!! !!|||... !!|||:!! !!!.! lHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGly 227550 : TCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGC : 227606 247 : LysTyrGlyLysGlyLysPheAsnLeuAsnAlaArgLeuIleLysIleValGluHisH : 266 !:! ! !! !.!!||| !..|||:!!! !|||:!! !!..|||||| |||| ArgAlaAspMetSerLys---ThrLeuAspAspArgIleAlaSerIleValThrHisH 227607 : AGAGCGGATATGAGCAAA---ACACTGGATGATAGAATCGCTAGCATCGTCACTCACC : 227663 267 : isLeuGlnIleLeu{Ar} >>>> Target Intron 1 >>>> {g}PheSerAl : 274 ||:!!!:!||||||{!.} 396 bp {!}||| !|| isValArgIleLeu{As}++ ++{n}PheLeuAl 227664 : ACGTTCGAATATTG{AA}gt.........................ag{C}TTTCTGGC : 228083 275 : aThrValGlnValIleLeuGlnGluValCysPheLeuGluPheIleGlySerIlePhe : 293 | !:!!:!! !! !:!!|||:!!:!!..!|||:!!||||||:!!|||!!!! !.!. aLeuIleGluLysThrMetGlnGlnIleAlaPheValGluPheLeuGlyCysThrIle 228084 : CCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGTACAATA : 228140 294 : LeuIleCysLeuLeuGluTyrTyrCysIleThr >>>> Target Intron 2 >> : 305 :!!:!:||||||:!!||||||||| !|||||| 72 bp IleLeuCysLeuIleGluTyrTyrIleIleThr++ 228141 : ATTCTGTGCCTCATCGAGTATTACATCATAACGgt....................... : 228178 306 : >> AspTrpGluLeuLysAsnThrIleSerLeuThrThrTyrIleIleLeuLeuIle : 322 !!:|||.!.! !|||.!. !! !! ! !..!|||||| ! ||||||:!! ++GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeu 228179 : ..agGAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTA : 228299 323 : SerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuMetGluLys : 342 |||!!!||||||||||||||||||...|||||||||||||||:!!:!! ||| ! SerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluHis+ 228300 : TCCTTTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACg : 228359 343 : >>>> Target Intron 3 >>>> SerSerSerIleGlyLeuSerCysPheMet : 351 1889 bp !!!!!!!.!:!!||| !!.!! !:!||| + ++CysArgLysValGlyGluLysSerTyrMet 228360 : t.........................agTGCAGAAAAGTCGGCGAAAAGTCGTACATG : 230275 352 : IleAspTrpTyrHisLeuProValLysThrIleGlnGlyLeuIleLeuIleIleAlaI : 371 |||!!:||||||!..||| !!! !!!.! !! ! !!! !|||||||||||||||! IleGluTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaM 230276 : ATCGAATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCA : 230335 372 : leSerAsnSerProThrLysIleSerAlaGlyGlyIleValAspLeuSerLeuPheTh : 390 !:||||||!!! !!||||||.!!!!!||||||..!!!:|||!!:||||||:!! !|| etSerAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnTh 230336 : TGTCCAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACAC : 230392 391 : rPheAlaAsnIleLeuLysThrSerPheValTyrLeuAsn : 403 ||||::!:!!:!! !! ! !! !! !|||||| !||| rPheSerAspValSerIleIlePheSerValTyrThrAsn 230393 : TTTCAGCGACGTAAGTATCATATTCTCTGTTTACACGAAT : 230433 vulgar: AmOr60 17 403 . KQ414889.1 226912 230433 + 597 M 28 84 G 0 6 M 124 372 G 0 3 M 83 249 G 1 0 M 17 51 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226913 230433 597 + . gene_id 4 ; sequence AmOr60 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226913 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226913 227679 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226913 230433 597 + . alignment_id 4 ; Query AmOr60 ; Align 226913 18 84 ; Align 227003 46 372 ; Align 227378 170 249 ; Align 227627 254 51 ; Align 228077 272 99 ; Align 228248 305 111 ; Align 230248 342 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 470 Query range: 173 -> 394 Target range: 300189 -> 302036 174 : AsnHisThrIleLysProValIleTyrProThrTyrSerGlyLeuPheAsnValGlnL : 193 |||:!!||| !||||||:!! !|||||| !|||..! !!!!!.!!:!!..!|||! AsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnT 300190 : AATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAA : 300247 194 : ysSerProIleTyrGluLeuIleTyrValLeuHisCysThrCysGlyTyrValMetTy : 212 ||||||! !||||||::::::::: ...|||||| !...!.! :!!||||| hrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTy 300248 : CCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTA : 300304 213 : rSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGly : 231 |!:!:!:|||.!!!.!|||! !.!!|||||||||:!!|||||||||||| !|||||| rAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGly 300305 : CAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGA : 300361 232 : GlnIleAspIleValIleAlaArgLeuAsnAspLeuValHisAlaLysTyrGlyLysG : 251 ||||||.!.||| !!!:|||||||||.!.|||||||||.!. !:! |||:!! GlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGlu---ArgThrGlyGlu- 300362 : CAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAG---AGGACGGGAGAG- : 300418 252 : lyLysPheAsnLeuAsnAlaArgLeuIleLysIleValGluHisHisLeuGlnIleLe : 270 ||| !:!! ! !! !! !|||:!! ||||||..! !!|||:!!:!!:!!|| --LysAspAspGlyProAspProLeuValValIleValArgAspHisValLysValLe 300419 : --AAGGACGACGGTCCTGATCCTTTGGTCGTTATCGTTCGAGATCACGTGAAGGTTTT : 300472 271 : u{Ar} >>>> Target Intron 1 >>>> {g}PheSerAlaThrValGlnVal : 278 |{||} 140 bp {|}|||:!! !!.!|||:!!! ! u{Ar}++ ++{g}PheAlaLysAsnValGluGlu 300473 : A{AG}gt.........................ag{A}TTTGCAAAGAACGTTGAGGAA : 300636 279 : IleLeuGlnGluValCysPheLeuGluPheIleGlySerIlePheLeuIleCysLeuL : 298 ! !|||!::!!: !!|||!!.:!!|||.!!.!!! !|||! .!.:!!:!:||||||| ThrLeuArgAspPheCysLeuValGluIlePheGluSerThrLeuIleLeuCysLeuL 300637 : ACTTTGCGTGACTTCTGCTTAGTGGAAATCTTCGAGTCCACGCTGATTTTGTGTTTGC : 300696 299 : euGluTyrTyrCysIleThr >>>> Target Intron 2 >>>> AspTrpGlu : 307 ||||||||||||||:!:..! 970 bp !!:|||:!! euGluTyrTyrCysLeuVal++ ++GluTrpGln 300697 : TCGAATACTACTGTTTGGTGgt.........................agGAATGGCAA : 301693 308 : LeuLysAsnThrIleSerLeuThrThrTyrIleIleLeuLeuIleSerLeuThrPheA : 327 !!..:!!||||||:!!:!! !|||!:!.!!! !||||||! |||!!!||||||| AsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheA 301694 : AATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCA : 301753 328 : snIlePheIleLeuCysTyrIleGlyGluLeuLeuMetGluLys >>>> Target : 342 |||||||||||!!!|||||||||||||||:!!||| |||:!! 80 snIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301754 : ATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt............ : 301800 343 : Intron 3 >>>> SerSerSerIleGlyLeuSerCysPheMetIleAspTrpTyrH : 356 bp !!!|||..!||||||! !:!!! !:! !||||||||||||: ++CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrA 301801 : .............agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACA : 301920 357 : isLeuProValLysThrIleGlnGlyLeuIleLeuIleIleAlaIleSerAsnSerPr : 375 !!||||||!.!|||! ! ! ! ! !|||||||||:!!! !!.!||||||.!.! !|| snLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrPr 301921 : ATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCC : 301977 376 : oThrLysIleSerAlaGlyGlyIleValAspLeuSerLeuPheThrPheAlaAsnIle : 394 | !!|||:!!!!!|||||| !|||:!!|||||||||||| !||||||::!::!:!! oProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301978 : GCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302034 vulgar: AmOr60 173 394 . KQ414889.1 300189 302036 + 470 M 72 216 G 1 0 M 4 12 G 1 0 M 19 57 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 33 99 5 0 2 I 0 966 3 0 2 M 37 111 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300190 302036 470 + . gene_id 5 ; sequence AmOr60 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300190 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300190 300476 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 300616 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300615 300616 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300617 300716 . + . KQ414889.1 exonerate:protein2genome:local exon 300617 300716 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300717 300718 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300717 301686 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301685 301686 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300190 302036 470 + . alignment_id 5 ; Query AmOr60 ; Align 300190 174 216 ; Align 300406 247 12 ; Align 300418 252 57 ; Align 300618 272 99 ; Align 301687 305 111 ; Align 301878 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 442 Query range: 9 -> 344 Target range: 232417 -> 234923 10 : AspTyrArgAlaArgAsnLeuLysTyrLysGluAspIleAlaTyrValThrLysHisS : 29 |||! ! ! !!..|||!!. !! !..!||| !! !||| !! !:!! ! AspSerSerArgAspThrLeuAsnAlaThrArgAspTyrGluTyrSerIleGlnValA 232418 : GACTCGTCCCGCGACACGTTGAACGCTACGCGAGACTACGAGTACAGCATCCAGGTGA : 232475 30 : erLysTrpIleLeuLysSerIleGlyIleTrpProIleIleLeuLysAsp<-><->Va : 46 :!:::|||.!!|||! ! !!!!:||| !|||||| !:!! !:!! ! !. snArgTrpPheLeuThrProMetGlyAlaTrpProArgValThrGluThrSerArgAl 232476 : ACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGC : 232532 47 : lAlaLysPheLeuProLysIleValIleGlyIleSerAsnPheValLeuLeuPheAla : 65 ! !:!!.!.||| !!|||:!::!!! ! !! !!!!:!!! !:!!:!!:!!! !:!! aGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHisSerLeuMetIleSerSer 232533 : CCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCG : 232589 66 : IleIleProCysIleLeuTyrIleIleLeuGluGluLysAsnAsnLeuIleLysLeuL : 85 |||:!!||||||||||||!:!|||:!:!!!|||!!:! !!:! ! !!:!:!!| IleValProCysIleLeuPheIleLeuPheGluAspThrSerLeuGluGluArgMetL 232590 : ATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGA : 232649 86 : ysLeuPheGlyLeuLeuMetPheCysSerIleAlaLeuMetLysHisTrpAlaLeuAl : 104 ||! !.!!|||! !:!!! !! ! !!!:!.! !:!!!!.:!!!! ..!||| ysSerIleGlyProMetSerHisPheLeuMetGlyGluLeuAsnTyrCysCysLeuLe 232650 : AGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTT : 232706 105 : aTyrArgLysProLysIleLysAsnCysIleGluGlnIleGlnAsnAspTrpGluGln : 123 ! !:! ! ! ! ||| !!|||:!:||||||:!::!!.!.||||||..!.!. uAlaLysAlaAsnAspIleLeuTyrCysValGluGlnValLysGlnAspTrpArgAsn 232707 : GGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAAC : 232763 124 : ValLysLeuTyrGluAspArgGluMetMetLeuLysTyrGlyGlnValGlyArgAsnL : 143 |||||| ! !! !!|||!!::!!||||||||| !!!.!:!!:!!||||||:::: ValLysLysProValHisArgAspLeuMetLeuLysAsnAlaLysLeuGlyArgSerI 232764 : GTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGA : 232823 144 : euThrIleIleCysAlaValPheMetTyrThrGlyGlyIleIleTyrHisThrIleLe : 162 !!.!! !|||..!||| !!! !|||:!!||||||! ! ! ! !!.!.! !:!! leAlaCysIleAlaAlaPheCysMetHisThrGlyValGlySerAspGluIleValTh 232824 : TAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCGGCTCCGACGAAATAGTCAC : 232880 163 : uGlnTyrGluIleGlyThrPhe<->IleAspGluTyrAsnHisThrIleLysProVal : 180 ! ! !...!!:.!!|||||| :!:! .!. ! !:!:!!:!!!!: ! |||:!! rGlyLeuArgMetSerThrPheTyrValGlyAsnGluSerTyrSerMetTyrProLeu 232881 : AGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTA : 232937 181 : IleTyrProThrTyrSerGlyLeuPheAsnValGlnLysSerProIleTyrGluLeuI : 200 !! ! !! !|||!!! !|||.!.:!!..!::! ||||||! !!|||:!!! ProCysThrPheTyrThrLysLeuMetAspThrArgPheSerProThrAsnGluIleM 232938 : CCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTCAGTCCGACGAACGAGATAA : 232997 201 : leTyrValLeuHisCysThrCysGlyTyrValMetTyrSerIleThrAlaGlyAlaCy : 219 !:!:!||||||!!.||| !! !|||!:!:!!:!! !!|||:!!|||!.!|||||||| etPheValLeuGlnCysLeuSerGlyPheIleValAsnSerValThrValGlyAlaCy 232998 : TGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTG : 233054 220 : sGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGlnIleAspIleValIleAla : 238 |||||||!.!|||:!!.!.!.!! !|||||||||||||||:!::!!:!:|||!!::!! sGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGlnLeuAsnValValMetSer 233055 : CGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCG : 233111 239 : ArgLeuAsnAspLeuValHisAlaLysTyrGlyLysGlyLysPheAsnLeuAsnAlaA : 258 !:!|||:!!||||||||| !!|||||| |||:!!! !:!! ! !.!. !! LysLeuAspAspLeuValAspAlaLys---GlyGlnGluGluArgValAlaGlnArgL 233112 : AAATTGGACGATTTGGTGGACGCGAAA---GGGCAGGAGGAGAGAGTCGCGCAGAGGA : 233168 259 : rgLeuIleLysIleValGluHisHisLeuGlnIleLeu{Ar} >>>> Target In : 271 :!||| ! ||||||||||||||||||!::! !|||{!!} 1315 ysLeuGlyPheIleValGluHisHisLeuArgThrLeu{Se}++ 233169 : AGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTA{AG}gt.............. : 233211 272 : tron 1 >>>> {g}PheSerAlaThrValGlnValIleLeuGlnGluValCysPhe : 285 bp {!}|||! ! !!.!:!!:!! !:!!:!!.!. !:!!|||.!. ++{r}PheIleArgAsnIleGluAsnValMetAsnLeuIleCysLeu 233212 : ...........ag{T}TTTATACGGAATATAGAGAACGTTATGAACCTAATATGCCTG : 234564 286 : LeuGluPheIleGlySerIlePheLeuIleCysLeuLeuGluTyr{Ty} >>>> Ta : 301 :!!|||!!.:!!|||!!!! !!. !!!:|||:!!|||||||||{!!} ValGluLeuValGlyCysThrLeuAsnMetCysMetLeuGluTyr{**}-+ 234565 : GTTGAGTTGGTAGGATGCACGTTGAACATGTGCATGCTCGAGTAT{TA}tt....... : 234616 302 : rget Intron 2 >>>> {r}CysIleThrAspTrpGluLeuLysAsnThrIleSe : 313 180 bp { }|||||| ! !! :!! !|||::: .. +-{*}CysIleLeuThrSerGlnGluLysSerLysGluLy 234617 : ..................aa{A}TGTATTTTAACTTCTCAGGAAAAgtcgaaggaaaa : 234828 314 : rLeuThrThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCys : 332 .|||.!!:!!|||:!!|||:!!! !:!:|||:!!||||||||||||||||||...||| sLeuAlaSerTyrValIleValTyrValSerMetThrPheAsnIlePheIlePheCys 234829 : attagCTTCATACGTCATCGTGTACGTGTCCATGACATTtaatatattcatattttgt : 234885 333 : TyrIleGlyGluLeuLeuMetGluLysSerSerSer : 344 |||||||||||| !|||! |||:!! !.!!||| TyrIleGlyGluThrLeuThrGluGlnValGlySer 234886 : tACATCGGAGAGACGCTTACAGAGCAGGTAGGATCA : 234923 vulgar: AmOr60 9 344 . KQ414889.1 232417 234923 + 442 M 36 108 G 0 6 M 124 372 G 0 3 M 78 234 G 1 0 M 22 66 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 29 87 S 0 2 5 0 2 I 0 176 3 0 2 S 1 1 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232418 234923 442 + . gene_id 6 ; sequence AmOr60 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232418 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232418 233208 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234613 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234613 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234614 234615 . + . intron_id 2 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 234614 234793 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234792 234793 . + . intron_id 1 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 234794 234923 . + . KQ414889.1 exonerate:protein2genome:local exon 234794 234923 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232418 234923 442 + . alignment_id 6 ; Query AmOr60 ; Align 232418 10 108 ; Align 232532 46 372 ; Align 232907 170 234 ; Align 233141 249 66 ; Align 234525 272 87 ; Align 234795 302 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 427 Query range: 23 -> 370 Target range: 259772 -> 262012 24 : TyrValThrLysHisSerLysTrpIleLeuLysSerIleGlyIleTrpPro<-><->I : 41 ||| ! !:!! !!:!::!|||.!!|||||| !!|||||| !|||||| TyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerS 259773 : TATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCAT : 259830 42 : leIleLeuLysAspValAlaLysPheLeuProLysIleValIleGlyIleSerAsnPh : 60 ! ! !! :!!! !|||.!!:!! !! |||:!!||| !|||!!! !! erSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSe 259831 : CCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAG : 259887 61 : eValLeuLeuPheAlaIleIleProCysIleLeuTyrIleIleLeuGluGluLysAsn : 79 !..!:!!||| !!.!!:!:|||||||||:!!|||:!!!!::!!||||||:!!:!!!:! rThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSer 259888 : TACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGT : 259944 80 : AsnLeuIleLysLeuLysLeuPheGlyLeuLeuMetPheCysSerIleAlaLeuMetL : 99 ! !!!:||| !|||:!!.!!|||! !|||! !!! ! !:!!!.!! !!!:! LeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleA 259945 : TTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTA : 260004 100 : ysHisTrpAlaLeuAlaTyrArgLysProLysIleLysAsnCysIleGluGlnIleGl : 118 !.:!! .!!||| !! ||| ! ! ||| !:!|||:!:|||!!.:!::! snTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGl 260005 : ATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGA : 260061 119 : nAsnAspTrpGluGlnValLysLeuTyrGluAspArgGluMetMetLeuLysTyrGly : 137 !|||||||||..! :!!! ! ! ! :!!|||!:!.!.:!!||||||!:!|||!.! uAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAla 260062 : GAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCG : 260118 138 : GlnValGlyArgAsnLeuThrIleIleCysAlaValPheMetTyrThrGlyGlyIleI : 157 :!! !!|||||| !!:!!.!! ! !||||||!.!|||:!! ! !|||! !:!: LysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuC 260119 : AAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGT : 260178 158 : leTyrHisThrIleLeuGlnTyrGluIleGlyThrPhe<->IleAspGluTyrAsnHi : 175 !!:! ! !:!! ! !! ...! !! !..!.!. :!:! .!. ! !.... ysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrAr 260179 : GCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAG : 260235 176 : sThrIleLysProValIleTyrProThrTyrSerGlyLeuPheAsnValGlnLysSer : 194 .! !:!! ! ! !:!! ! ! !!..!|||!.!! !|||.!.||||||.!. ! ||| gIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSer 260236 : GATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGT : 260292 195 : ProIleTyrGluLeuIleTyrValLeuHisCysThrCysGlyTyrValMetTyrSerI : 214 |||!!: !!|||:!!:!! !|||:!!!!.! !..!! |||!:!:!!:!! !!|||! ProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerS 260293 : CCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGA : 260352 215 : leThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGlnIl : 233 !|||!.!||| !! !.!!|||||||||:!!.!...!.!!|||||||||||||||:! erThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLe 260353 : GCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTT : 260409 234 : eAspIleValIleAlaArgLeuAsnAspLeuValHisAlaLysTyrGlyLysGlyLys : 252 ::!!:!::!!!!:! ! !!:!!!..!!:!!!||| !!! !..! ..!!:! !||| uAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLys 260410 : GAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAA : 260466 253 : PheAsnLeuAsnAlaArgLeuIleLysIleValGluHisHisLeuGlnIleLeuArgP : 272 !! ! ! !..!:!! ! !||||||||||||||||||::! !|||! !! LysAlaProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeuThr* 260467 : AAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTCACGT : 260526 273 : heSerAlaThrValGlnValIleLeuGlnGluValCysPheLeuGluPheIleGlySe : 291 ..! ! !! ! ..!.!!:!!!:! !! ! !|||:!! :!!||||| **AspLeuPheAspIleThrPheValArg***ArgIlePheIleIleThrValGlySe 260527 : AAGATTTGTTTGATATTACTTTTGTACGATAAAGGATTTTTATAATTACGGTAGGATC : 260583 292 : rIlePheLeuIleCysLeu{Le} >>>> Target Intron 1 >>>> {u}Glu : 299 | ...::: |||{:!} 1109 bp {!} rThrIleIle***LysLeu{Il}++ -+{e}Tyr 260584 : Tactataatttgaaaatta{at}gt.........................tg{a}tat : 261716 300 : TyrTyrCysIleThrAspTrpGluLeuLysAsnThrIleSerLeuThrThrTyrIleI : 319 :::::: ::: !!:|||! !:!!:!!! ! !!:!|||:!!||||||.!!! PhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheM 261717 : ttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCA : 261776 320 : leLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuLe : 338 !::!!||||||:!!:!! !||||||:!!||||||:!!|||||||||||||||:!!|| etMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLe 261777 : TGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACT : 261833 339 : uMetGluLys >>>> Target Intron 2 >>>> SerSerSerIleGlyLeuS : 348 |! !|||:!! 81 bp !!!|||!.!:!!||| ! uThrGluGln++ ++CysSerLysValGlyAspV 261834 : AACGGAACAGgt.........................agTGCTCGAAAGTTGGTGACG : 261944 349 : erCysPheMetIleAspTrpTyrHisLeuProValLysThrIleGlnGlyLeuIleLe : 367 ! !!:!|||! !:!!||||||:!!||||||! !|||!:!|||! ! !|||||||| alValTyrMetThrAsnTrpTyrTyrLeuProAspLysSerIleLeuAspLeuIleLe 261945 : TTGTTTACATGACAAACTGGTATTATTTACCTGATAAAAGTATCCTTGATTTGATTTT : 262001 368 : uIleIleAla : 370 |||||||||| uIleIleAla 262002 : GATCATTGCA : 262012 vulgar: AmOr60 23 370 . KQ414889.1 259772 262012 + 427 M 17 51 G 0 6 M 129 387 G 0 3 M 128 384 S 0 2 5 0 2 I 0 1105 3 0 2 S 1 1 M 43 129 5 0 2 I 0 77 3 0 2 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259773 262012 427 + . gene_id 7 ; sequence AmOr60 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259773 260605 . + . KQ414889.1 exonerate:protein2genome:local exon 259773 260605 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260606 260607 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 260606 261714 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261713 261714 . + . intron_id 0 ; splice_site "tg" KQ414889.1 exonerate:protein2genome:local cds 261715 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261715 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262012 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262012 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259773 262012 427 + . alignment_id 7 ; Query AmOr60 ; Align 259773 24 51 ; Align 259830 41 387 ; Align 260220 170 384 ; Align 261716 299 129 ; Align 261926 342 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 423 Query range: 8 -> 394 Target range: 256607 -> 258624 9 : SerAspTyrArgAlaArgAsnLeuLysTyrLysGluAspIleAlaTyrValThrLysH : 28 !:!!!:!:! !!.! !!!. !!!.!:!|||... !!! !! !||| ! !:!! AsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerLeuGlnL 256608 : AACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTCTCCAGT : 256665 29 : isSerLysTrpIleLeuLysSerIleGlyIleTrpProIleIleLeuLysAspValAl : 47 !:!::!|||.!!|||||| !!|||||| !|||||| ! ! !... !..!.! euAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerThrThrTh 256666 : TGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCACTACAAC : 256722 48 : a<->LysPheLeuProLysIleValIleGlyIleSerAsnPhe<->ValLeuLeuPhe : 64 ! :!! ! !..!||||||:!:..!||| ! !!:! !:!!|||||| rLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIleLeuPhe 256723 : CCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTC : 256779 65 : AlaIleIleProCysIleLeuTyrIleIleLeuGluGluLysAsnAsnLeuIleLysL : 84 .!!:!:|||||||||:!:|||:!!:!!.!!|||!!:!!: ! !:! !! :::|||: ThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrMetLysV 256780 : ACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAcatgaaag : 256839 85 : euLysLeuPheGlyLeuLeuMetPheCysSerIleAlaLeuMetLysHisTrpAlaLe : 103 ::||| ||||||! !:!!! !!! ! !|||::!! ! !!.:!! ! !|| alLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrThrLeuLe 256840 : tgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACACGTTGCT : 256896 104 : uAlaTyrArgLysProLysIleLysAsnCysIleGluGlnIleGlnAsnAspTrpGlu : 122 | !! !:! ! ! ! |||::: !!|||:!!|||!!.|||:!!!..||||||..! uLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAspTrpArg 256897 : GTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGA : 256953 123 : GlnValLysLeuTyrGluAspArgGluMetMetLeuLysTyrGlyGlnValGlyArgA : 142 ..!|||!:! ! ! :!!|||!:!:!!:!!|||:!!||| !!!.!::! !!|||||| MetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheGlyArgT 256954 : ATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTT : 257013 143 : snLeuThrIleIleCysAlaValPheMetTyrThrGlyGlyIleIleTyrHisThrIl : 161 !!:!!.!!! !.!!||||||!.!.!!||| ! !:!||| ... ::: ..! yrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePheValSe 257014 : ACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttcttcgtGTC : 257070 162 : eLeuGlnTyrGluIleGlyThrPheIleAspGluTyrAsnHisThrIleLysProVal : 180 ! ! ! .!.! ! !! !.!! !! ! ! !!.!. |||||| !! !||| rSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleValArgVal 257071 : GTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTGCGAGTG : 257127 181 : IleTyrProThr<->TyrSerGlyLeuPheAsnValGlnLysSerProIleTyrGluL : 199 :!! ! !||| |||!.! !|||!!.||||||.!.:!!||||||! !!|||: LeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrAsnGluI 257128 : CTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGA : 257187 200 : euIleTyrValLeuHisCysThrCysGlyTyrValMetTyrSerIleThrAlaGlyAl : 218 !!:!: ! !!:!!!!. ! !! ..! !:!! ! !!!!! !|||!.!.!! leValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrValSerIl 257188 : TCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAGTAT : 257244 219 : aCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGlnIleAspIleValIle : 237 !! !.!!|||||||||:!!|||!.!|||||||||! !||||||:!: !:!::!!!!: ePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrValLeuMet 257245 : ATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATG : 257301 238 : AlaArgLeuAsnAspLeuValHisAlaLysTyrGlyLysGlyLysPheAsnLeuAsnA : 257 :!! !!:!!!..!!:!!!|||:!!! !..! ..!::: ||| ! SerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheProPheL 257302 : TCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttcctttCA : 257361 258 : laArgLeuIleLysIleValGluHisHisLeuGlnIleLeu{Ar} >>>> Target : 271 !!:!:!! ! !||||||||||||||||||::!:!:|||{||} 7 ysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Ar}++ 257362 : AGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt........... : 257407 272 : Intron 1 >>>> {g}PheSerAlaThrValGlnValIleLeuGlnGluValCys : 284 60 bp {|}! ! ! ! ! !.!.:!!:!:! !|||.!.! !! +-{g}CysValMetTyrArgAsnLeuLeuGlnGlnAsnGly*** 257408 : ..............ac{G}TGCGTTATGTACCGAAACCTGTTGCAACAAAATGGTTAA : 258202 285 : PheLeuGluPheIleGlySerIlePheLeuIleCysLeuLeuGluTyrTyrCysIleT : 304 !! ! !:!! !..!! ! !.!.! !! ::: :::||| ... AsnArgThrTyrAsnAsnPheProIleHisSerTyrSerValIlePheTyrTyrPheG 258203 : AATCGTACCTACAATAATTTTCCTATACACAGctattctgttattttttattattttc : 258262 305 : hrAspTrpGluLeuLysAsnThrIleSerLeuThrThrTyrIleIleLeuLeuIleSe : 323 :::|||... !:::::: :::|||::::::|||.!!!!::!!|||||||| lnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheMetIleLeuIleSe 258263 : aggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTATGATACTCATATc : 258319 324 : rLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuMetGluLys > : 342 ||||:::||||||||||||::::::|||||||||||||||:!!|||! |||:!! rLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluGln++ 258320 : actttctttcaatatttttgtaatatgttACATAGGTGAAATATTAACAGAACAGgt. : 258378 343 : >>> Target Intron 2 >>>> SerSerSerIleGlyLeuSerCysPheMetIl : 352 90 bp !!!!.!!.!:!!||| ! ! !!:!|||! ++CysLysLysValGlyAspValValTyrMetTh 258379 : ........................agTGCAAGAAAGTTGGCGACGTGGTTTATATGAC : 258496 353 : eAspTrpTyrHisLeuProValLysThrIleGlnGlyLeuIleLeuIleIleAlaIle : 371 !|||||||||:!!||||||! !|||! !|||! ! !|||||||||:!!|||||| ! rAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLeuValIleAlaArg 258497 : AGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTTGGTAATCGCACGA : 258553 372 : SerAsnSerProThrLysIleSerAlaGlyGlyIleValAspLeuSerLeuPheThrP : 391 |||!:! ! !..!:!!|||!!!|||||| ... ::!|||:!!!:!|||| SerSerValValValGlnIleThrAlaGlyLysPhePheHisMetSerIleTyrThrP 258554 : TCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatGTCCATTTACACAT : 258613 392 : heAlaAsnIle : 394 ||::!:!!:!: heSerAspVal 258614 : TCAGCGATGTG : 258624 vulgar: AmOr60 8 394 . KQ414889.1 256607 258624 + 423 M 39 117 G 0 3 M 13 39 G 0 3 M 124 372 G 0 3 M 86 258 S 0 2 5 0 2 I 0 756 3 0 2 S 1 1 M 70 210 5 0 2 I 0 86 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256608 258624 423 + . gene_id 8 ; sequence AmOr60 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256608 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256608 257404 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 258164 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258163 258164 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 258165 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258165 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256608 258624 423 + . alignment_id 8 ; Query AmOr60 ; Align 256608 9 117 ; Align 256728 48 39 ; Align 256770 61 372 ; Align 257145 185 258 ; Align 258166 272 210 ; Align 258466 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 411 Query range: 17 -> 272 Target range: 221360 -> 222131 18 : TyrLysGluAspIleAlaTyrValThrLysHisSerLysTrpIleLeuLysSerIleG : 37 |||||| !:!!:!: !! !..!:!! |||:::|||||||||||| !!|||| TyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleG 221361 : TACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCG : 221418 38 : lyIleTrpPro<-><->IleIleLeuLysAspValAlaLysPheLeuProLysIleVa : 54 ||:!!|||||| !! !:!!... |||! !!:!!:!||| ! !:!::! lyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLeuIl 221419 : GTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCTGAT : 221475 55 : lIleGlyIleSerAsnPheValLeuLeuPheAlaIleIleProCysIleLeuTyrIle : 73 !! !! !:!!!!! !! !:!!:!! !||| !:!::!!||||||! !||||||:!: eAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyrVal 221476 : AAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTG : 221532 74 : IleLeuGluGluLysAsnAsnLeuIleLysLeuLysLeuPheGlyLeuLeuMetPheC : 93 |||||||||! !:!!:!! !! !! !!:!:!!||||||!!.|||! !|||! |||| IleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheC 221533 : ATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCT : 221592 94 : ysSerIleAlaLeuMetLysHisTrpAlaLeuAlaTyrArgLysProLysIleLysAs : 112 || !!!:|||!!!:!:|||:!! !||| ! ! !:!! ! ! |||:::.! ysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGl 221593 : GCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGA : 221649 113 : nCysIleGluGlnIleGlnAsnAspTrpGluGlnValLysLeuTyrGluAspArgGlu : 131 .|||||||||!::|||:!! ||||||:!!.!.:!!! ! !! !:!!|||!:!!!: uCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLysAsp 221650 : GTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAGGAT : 221706 132 : MetMetLeuLysTyrGlyGlnValGlyArgAsnLeuThrIleIleCysAlaValPheM : 151 !!:|||:!!:!! !!!.! !!||||||...|||! !!!:||||||.!! !!|||| IleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheM 221707 : ATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCA : 221766 152 : etTyrThrGlyGlyIleIleTyrHisThrIleLeuGlnTyrGluIleGlyThrPhe<- : 170 |||||!:!||| :::...|||::: ! !:!!! !!:!...:!:|||! !.!! etTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIlePr 221767 : TGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCC : 221823 171 : >IleAspGluTyrAsnHisThrIleLysProValIleTyrProThrTyrSerGlyLeu : 188 .!.!!: ||| |||... |||:!!:!:!:!||| !! !!! !:!! oAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPheIle 221824 : TGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATC : 221880 189 : PheAsnValGlnLysSerProIleTyrGluLeuIleTyrValLeuHisCysThrCysG : 208 !!:!!..!!:! ! ||||||:!! !!|||:!!:!:!:! !|||!!. !! !...| ValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaG 221881 : GTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGG : 221940 209 : lyTyrValMetTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheValTh : 227 || !:!!|||:!!|||||||||:!!!.!||||||.!!|||!.!|||:!!|||!.!.. lyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaVa 221941 : GTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGT : 221997 228 : rHisAlaCysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeuValHisAla : 246 !|||||||||||||||!!:.!.:!::!!!!:::! !!|||!!. !!|||:!!:!!!.! lHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsnGly 221998 : GCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGC : 222054 247 : LysTyrGlyLysGlyLysPheAsnLeuAsnAlaArgLeuIleLysIleValGluHisH : 266 ::! ! !! ! !!!!. |||:!!:!! !|||:!! |||||||||.!.!!.| ArgAlaAspMetCysAsn---AsnValAspArgArgIleAlaLysIleValAsnGlnH 222055 : CGGGCGGATATGTGTAAC---AACGTGGATAGGAGAATAGCGAAGATTGTGAATCAAC : 222111 267 : isLeuGlnIleLeuArgPhe : 272 ||:!!!:!||||||!:!!:! isValArgIleLeuGlnTyr 222112 : ACGTTCGAATATTGCAGTAT : 222131 vulgar: AmOr60 17 272 . KQ414889.1 221360 222131 + 411 M 23 69 G 0 6 M 129 387 G 0 3 M 83 249 G 1 0 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221361 222131 411 + . gene_id 9 ; sequence AmOr60 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221361 222131 . + . KQ414889.1 exonerate:protein2genome:local exon 221361 222131 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221361 222131 411 + . alignment_id 9 ; Query AmOr60 ; Align 221361 18 69 ; Align 221436 41 387 ; Align 221826 170 249 ; Align 222075 254 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 407 Query range: 0 -> 271 Target range: 217105 -> 217924 1 : MetHisLeuThrIleLeuAsnGluSerAspTyrArgAlaArgAsnLeuLysTyrLysG : 20 |||!!. ! ! ! !|||:!!..!.!.! !! ! !! !:!!! !:!:|||:::: MetGlnLysLeuAlaThrAsnLysGluGlnSerProArgThrAspTyrGluTyrGluL 217106 : ATGCAAAAACTTGCAACAAACAAGGAACAATCCCCCAGAACCGACTACGAgtacgaga : 217163 21 : luAspIleAlaTyrValThrLysHisSerLysTrpIleLeuLysSerIleGlyIleTr : 39 :::::||| !! !:!! !:!:::|||:!:|||||| !!!!:|||:!!|| ysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTr 217164 : aaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTG : 217220 40 : pProIleIleLeuLysAspVal<-><->AlaLysPheLeuProLysIleValIleGly : 56 ||||! ! !! !! !..! !|||.!!||| !|||:!::!!! !!.! pProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAla 217221 : GCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCC : 217277 57 : IleSerAsnPheValLeuLeuPheAlaIleIleProCysIleLeuTyrIleIleLeuG : 76 :!!!!! !! !:!!:!! !||| !.!!:!!|||||| !:!!|||:!:.!!|||| LeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeuG 217278 : TTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCG : 217337 77 : luGluLysAsnAsnLeuIleLysLeuLysLeuPheGlyLeuLeuMetPheCysSerIl : 95 ||! :!!:!! !! ! !||||||||||||||||||! !|||!!:|||||| !!! luValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValMe 217338 : AAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGAT : 217394 96 : eAlaLeuMetLysHisTrpAlaLeuAlaTyrArgLysProLysIleLysAsnCysIle : 114 :|||!!!:!:|||:!!!:::!!||| ! !!.!||| !! ! |||:::.!.|||:!: tAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCysVal 217395 : GGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTG : 217451 115 : GluGlnIleGlnAsnAspTrpGluGlnValLysLeuTyrGluAspArgGluMetMetL : 134 ..!::!|||:!!...||||||..!.!.|||!:!! ! ! :!!||||||||| !|||: ArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArgGluAlaMetI 217452 : AGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGA : 217511 135 : euLysTyrGlyGlnValGlyArgAsnLeuThrIleIleCysAlaValPheMetTyrTh : 153 !! ! !!!.!.!. !!||||||!!.|||..!:!!:!!|||.!! !!|||||||||!: leValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrSe 217512 : TAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAG : 217568 154 : rGlyGlyIleIleTyrHisThrIleLeuGlnTyrGluIleGlyThrPheIleAspGlu : 172 !||| :::...|||::: ! !:!!! ! !...:!:|||! !.!!:!!...||| rGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGlu 217569 : CggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAG : 217625 173 : Tyr<->AsnHisThrIleLysProValIleTyrProThrTyrSerGlyLeuPheAsnV : 191 !! |||! !|||.!!! |||:!!:!:!:!||| ! !.! !:!!.!!:!!. AsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyrIleIleAspT 217626 : AATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATA : 217685 192 : alGlnLysSerProIleTyrGluLeuIleTyrValLeuHisCysThrCysGlyTyrVa : 210 .!!:: ! !!!|||! !!|||:!!:!:!:! !!|||!!.! ! !..!||| !:! hrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLe 217686 : CTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTT : 217742 211 : lMetTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheValThrHisAla : 229 !|||:!!.!!||||||:!!!.!||||||.!!||||||||| !|||!.!..!|||||| uMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAla 217743 : GATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCC : 217799 230 : CysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeuValHisAlaLysTyrG : 249 ||||||||||||!!::!::!!!!: ! !!|||.!. !!|||:!! !!!.!!:! ! CysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgAlaA 217800 : TGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGAGCGG : 217859 250 : lyLysGlyLysPheAsnLeuAsnAlaArgLeuIleLysIleValGluHisHisLeuGl : 268 !! !.!! ! !.!:!!:!!!.!|||:!! !..||||||...!!.|||:!!!: spMetSerAsp---ThrValAspGlyArgIleAlaSerIleValSerGlnHisValAr 217860 : ATATGAGCGAT---ACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCG : 217913 269 : nIleLeuArg : 271 !||||||!:! gIleLeuLys 217914 : GATATTAAAG : 217924 vulgar: AmOr60 0 271 . KQ414889.1 217105 217924 + 407 M 46 138 G 0 6 M 127 381 G 0 3 M 79 237 G 1 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217106 217924 407 + . gene_id 10 ; sequence AmOr60 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217106 217924 . + . KQ414889.1 exonerate:protein2genome:local exon 217106 217924 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217106 217924 407 + . alignment_id 10 ; Query AmOr60 ; Align 217106 1 138 ; Align 217250 47 381 ; Align 217634 174 237 ; Align 217871 254 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 393 Query range: 23 -> 304 Target range: 266637 -> 267558 24 : TyrValThrLysHisSerLysTrpIleLeuLysSerIleGlyIleTrpPro<-><->I : 41 ||| ! !:!! !:!::!|||.!!|||||| !!|||||| !|||||| TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuS 266638 : TACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGT : 266695 42 : leIleLeuLysAspValAlaLysPheLeuProLysIleValIleGlyIleSerAsnPh : 60 !:!! !... ! :!!! !::!.!!:!! !! ! !:!!|||! !|||!!! !!! erLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCy 266696 : CACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTG : 266752 61 : eValLeuLeuPheAlaIleIleProCysIleLeuTyrIleIleLeuGluGluLysAsn : 79 ! !:!!||||||.!!:!!|||||||||:!:!!!:!!:!!:!!||||||!!::!!!:! sSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSer 266753 : CTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGT : 266809 80 : AsnLeuIleLysLeuLysLeuPheGlyLeuLeuMetPheCysSerIleAlaLeuMetL : 99 ! !! !! |||:!!|||:!!||||||! !|||! !!! ! !:!!!.! !!!:! IleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleA 266810 : ATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTA : 266869 100 : ysHisTrpAlaLeuAlaTyrArgLysProLysIleLysAsnCysIleGluGlnIleGl : 118 !.:!! .!!||| ! |||!.. !:!!|||:::..!|||:!!|||!!.!!:|| snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 266870 : ACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCA : 266926 119 : nAsnAspTrpGluGlnValLysLeuTyrGluAspArgGluMetMetLeuLysTyrGly : 137 |!..||||||..! |||! ! ||||||!:!:!!:!!||||||||| !!!.! nThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAla 266927 : AACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCG : 266983 138 : GlnValGlyArgAsnLeuThrIleIleCysAlaValPheMetTyrThrGlyGlyIleI : 157 ::!:!!|||||| !!:!!.!!|||.!!||||||!.!|||||| ! !|||! !:!! ArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuG 266984 : AGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCG : 267043 158 : leTyrHisThrIleLeuGlnTyrGluIleGlyThrPhe<->IleAspGluTyrAsnHi : 175 !||| !..!||| ! !!:! !!: !||| ! :!!! !.!. ! !.!.. lyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrAr 267044 : GCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAG : 267100 176 : sThrIleLysProValIleTyrProThrTyrSerGlyLeuPheAsnValGlnLysSer : 194 .! !:!! ! ! !:!! !! ! !!..!|||!.! !:!!.!! |||.!.! ||| gIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSer 267101 : GATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGC : 267157 195 : ProIleTyrGluLeuIleTyrValLeuHisCysThrCysGlyTyrValMetTyrSerI : 214 |||! !!|||:!!:!! !|||! !!!.! !..!! |||!:!:!!:!! !!|||! ProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerS 267158 : CCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGA : 267217 215 : leThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGlnIl : 233 !..!!.!||||||! !.!!|||||||||:!!|||!.!.!!|||||||||||||||:! erValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLe 267218 : GCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCT : 267274 234 : eAspIleValIleAlaArgLeuAsnAspLeuValHisAlaLysTyrGlyLysGlyLys : 252 :..!:!::!!!!: ! !!:!!!!.!!:!!!|||:!! !... ! !!....!||| uSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLys 267275 : GAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAG : 267331 253 : PheAsnLeuAsnAlaArgLeuIleLysIleValGluHisHisLeuGlnIleLeu{Ar} : 271 ! !! ! !! !!:!:!! ! !:!!|||||||||||||||::!:!!|||{!!} AsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se} 267332 : AACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG} : 267388 272 : >>>> Target Intron 1 >>>> {g}PheSerAlaThrValGlnValIleLe : 280 69 bp {!}|||! !||| !:!!:!! !:!!:! ++ ++{r}PheIleAlaArgIleGluSerValMe 267389 : gt.........................ag{C}TTCATAGCACGTATCGAAAGTGTAAT : 267484 281 : uGlnGluValCysPheLeuGluPheIleGlySerIlePheLeuIleCysLeuLeuGlu : 299 !...|||:!!||||||:!!|||!!..!! !!!!! !.!. !||||||:!!|||... tSerGluIleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSer 267485 : GAGCGAAATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGC : 267541 300 : TyrTyrCysIleThr : 304 |||||| !:!!||| TyrTyrIleLeuThr 267542 : TATTATATCCTTACG : 267558 vulgar: AmOr60 23 304 . KQ414889.1 266637 267558 + 393 M 17 51 G 0 6 M 129 387 G 0 3 M 101 303 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266638 267558 393 + . gene_id 11 ; sequence AmOr60 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266638 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266638 267389 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267558 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267558 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266638 267558 393 + . alignment_id 11 ; Query AmOr60 ; Align 266638 24 51 ; Align 266695 41 387 ; Align 267085 170 303 ; Align 267460 272 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 373 Query range: 14 -> 271 Target range: 208185 -> 208962 15 : AsnLeuLysTyrLysGluAspIleAlaTyrValThrLysHisSerLysTrpIleLeuL : 34 ||| !!!.||||||.!.|||:!:::!!:! !..!:::! !:! !|||! |||| AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 35 : ysSerIleGlyIleTrpPro<->IleIleLeuLysAspValAlaLysPheLeuProLy : 52 ||! !|||||| !|||||| !||| !:::..! ! !:!! ! !! ! ! ysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHi 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCA : 208300 53 : sIleValIleGlyIleSerAsnPheValLeuLeu<->PheAlaIleIleProCysIle : 70 |||:!!:!!..!:!! !!:! ! !|||||| ||| !:!:|||||| ! ! sIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGly 208301 : TATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGC : 208357 71 : LeuTyrIleIleLeuGluGluLysAsnAsnLeuIleLysLeuLysLeuPheGlyLeuL : 90 :!!!:! ||||||! !! :!!:!! !! ! !:!!||||||:!!! !.!! !| MetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaL 208358 : ATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTC : 208417 91 : euMetPheCysSerIleAlaLeuMetLysHisTrpAlaLeuAlaTyrArgLysProLy : 109 ||! |||! !! !!!:|||!!!! !|||:!! ! !:!!.!! !|||:!! ! ! euSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAs 208418 : TGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGA : 208474 110 : sIleLysAsnCysIleGluGlnIleGlnAsnAspTrpGluGlnValLysLeuTyrGlu : 128 |||::!!!.|||:!!||| ! :!!:!! !||||||..!.!.|||:!!! ! ! ||| pIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGlu 208475 : CATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAG : 208531 129 : AspArgGluMetMetLeuLysTyrGlyGlnValGlyArgAsnLeuThrIleIleCysA : 148 ||||||:!!!!:|||||| ! !!!.!... !!!.!|||!!.|||! !:!:||||||! AspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysG 208532 : GACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCG : 208591 149 : laValPheMetTyrThrGlyGlyIleIleTyrHisThrIleLeuGlnTyrGluIleGl : 167 .!!.!||||||||| !||| |||...|||::: ! !|||! ! ! !! lyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAs 208592 : GAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGA : 208648 168 : yThrPheIleAspGlu<->TyrAsnHisThrIleLysProValIleTyrProThrTyr : 185 !! ! !!:!!!!:||| !||| ||| !!:! !:!!:!!||||||..! ! pLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValPro 208649 : CAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCT : 208705 186 : SerGlyLeuPheAsnValGlnLysSerProIleTyrGluLeuIleTyrValLeuHisC : 205 !.! !:!!.!.:!!|||!:! ! ||||||:!: !!|||:!!.!!|||..!:!!!!.! LysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnL 208706 : AAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAAT : 208765 206 : ysThrCysGlyTyrValMetTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLe : 224 !! |||!:!||| :!!!:!||||||!.!||||||||||||||||||||||| euLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLe 208766 : TGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCT : 208822 225 : uPheValThrHisAlaCysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeu : 243 |.!!!.!! !|||||||||||||||:!:.!.|||:!!!!::!! !!:!!.!. ! ||| uLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeu 208823 : GCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTG : 208879 244 : ValHisAlaLysTyrGlyLysGlyLysPheAsnLeuAsnAlaArgLeuIleLysIleV : 263 ||| !!!.!::! ! ! !:!!! !||| ||||||:!! !|||||| !!!.|||| ValAspGlyArgGluAspGluGluLys---AsnLeuAspGlnArgLeuAlaAsnIleV 208880 : GTCGATGGACGGGAGGACGAGGAGAAG---AATTTGGATCAGAGGTTGGCTAATATCG : 208936 264 : alGluHisHisLeuGlnIleLeuArg : 271 |||||!!.|||:!!!:!:!::!!!:! alGluGlnHisValArgValIleLys 208937 : TGGAGCAGCATGTTCGAGTGATCAAG : 208962 vulgar: AmOr60 14 271 . KQ414889.1 208185 208962 + 373 M 26 78 G 0 3 M 23 69 G 0 3 M 109 327 G 0 3 M 80 240 G 1 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 208962 373 + . gene_id 12 ; sequence AmOr60 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208186 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208962 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208186 208962 373 + . alignment_id 12 ; Query AmOr60 ; Align 208186 15 78 ; Align 208267 41 69 ; Align 208339 64 327 ; Align 208669 173 240 ; Align 208909 254 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 362 Query range: 6 -> 272 Target range: 212821 -> 213625 7 : AsnGluSerAspTyrArgAlaArgAsnLeuLysTyrLysGluAspIleAlaTyrValT : 26 !!.!!:..! ! ! !:!!.!..!:!!! !! |||:!!:!! ::: LysAspGluLysLeuGlnValGluAspCysThrTyrGluLysArgValAsnLeuSerI 212822 : AAAGATGAGAAATTGCAGGTCGAAGACTGTACCTACGAGAAACGtgtaaatttaagta : 212879 27 : hrLysHisSerLysTrpIleLeuLysSerIleGlyIleTrpPro<-><->IleIleLe : 43 ! !:!:::|||:!!|||||| !!! |||:!:|||||| ! !:! leProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspLysSerTyrVa 212880 : tacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCTACGT : 212936 44 : uLysAspValAlaLysPheLeuProLysIleValIleGlyIleSerAsnPheValLeu : 62 !..! :!!! !||| !:!! !!::!:!:|||! ! !:!!!!! !! !:!!:!! lSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLeuIle 212937 : TTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATC : 212993 63 : LeuPheAlaIleIleProCysIleLeuTyrIleIleLeuGluGluLysAsnAsnLeuI : 82 !!:! !:!!|||||||||! !||||||:!:.!!|||!!:! !:::||| ... GlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGluAsnIlePheL 212994 : GGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatatattta : 213053 83 : leLysLeuLysLeuPheGlyLeuLeuMetPheCysSerIleAlaLeuMetLysHisTr : 101 ::::!!:!!|||||||||:!!!!! |||||| ! !|||||| !|||:!! ysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHi 213054 : aagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCA : 213110 102 : pAlaLeuAlaTyrArgLysProLysIleLysAsnCysIleGluGlnIleGlnAsnAsp : 120 :!!||| ! !!.! ! ! |||:::!..|||:!!|||!!.!!::!! !!||| sSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMetLysTyrAsp 213111 : TTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATATGAC : 213167 121 : TrpGluGlnValLysLeuTyrGluAspArgGluMetMetLeuLysTyrGlyGlnValG : 140 |||:!!.!.:!!! !! ! ! ||||||!:!|||!!:||| ! ! !!!.!... !!| TrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSerPheG 213168 : TGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTG : 213227 141 : lyArgAsnLeuThrIleIleCysAlaValPheMetTyrThrGlyGlyIleIleTyrHi : 159 ||!:!!..:!!..!! !||||||||| !!||||||||||||||| !! .!!||| lyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheThrPheTyrPh 213228 : GAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTT : 213284 160 : sThrIleLeuGlnTyrGluIleGlyThrPheIle<->AspGluTyrAsnHisThrIle : 177 ! !:!!:!!! ! !... ! !! !.!.:!! !!:!!: !||| |||.!! eLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAsnValThrPhe 213285 : CCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTC : 213341 178 : LysProValIleTyrProThrTyrSerGlyLeuPheAsnValGlnLysSerProIleT : 197 !:!! !:!!:!: !|||..!! !!! !:!! !!:!!|||!:! ! ||||||:!: ArgGlnMetValValProValSerArgPheIleValAspValArgTyrSerProValA 213342 : AGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGA : 213401 198 : yrGluLeuIleTyrValLeuHisCysThrCysGlyTyrValMetTyrSerIleThrAl : 216 !!|||:!!.!!!:!:!!:!!!!. !! !..!||| :!!!!::!!:!!|||.!!!. snGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaVa 213402 : ACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGT : 213458 217 : aGlyAlaCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGlnIleAspIle : 235 !! !||||||.!!|||||||||:!!|||!.!..!|||||||||||||||!!:! !||| lValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIle 213459 : GGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATT : 213515 236 : ValIleAlaArgLeuAsnAspLeuValHisAlaLysTyrGlyLysGlyLysPheAsnL : 255 :!!!!:::! !!|||.!. !!|||:!! !!!.!!:! ! ! !! !.!!||| |||: LeuMetSerTrpLeuGluHisLeuIleAspGlyArgGluAspMetSerLys---AsnV 213516 : TTGATGAGCTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGCAAG---AATG : 213572 256 : euAsnAlaArgLeuIleLysIleValGluHisHisLeuGlnIleLeuArgPhe : 272 !!:!!! !|||:!! ||||||.!.!!.|||:!!!:!||||||!:!!:: alAspAspArgIleAlaValIleValAsnGlnHisValArgIleLeuLysTrp 213573 : TGGACGACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTGAAGTGG : 213625 vulgar: AmOr60 6 272 . KQ414889.1 212821 213625 + 362 M 34 102 G 0 6 M 130 390 G 0 3 M 82 246 G 1 0 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212822 213625 362 + . gene_id 13 ; sequence AmOr60 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212822 213625 . + . KQ414889.1 exonerate:protein2genome:local exon 212822 213625 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212822 213625 362 + . alignment_id 13 ; Query AmOr60 ; Align 212822 7 102 ; Align 212930 41 390 ; Align 213323 171 246 ; Align 213569 254 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 359 Query range: 8 -> 271 Target range: 289690 -> 290482 9 : SerAspTyrArgAlaArgAsnLeuLysTyrLysGluAspIleAlaTyrValThrLysH : 28 |||..! !!||| !! !||| !:::|||:!! !|||||| !|||..! !:!! SerSerAspArgProSerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluL 289691 : AGCAGCGATCGTCCGTCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAAT : 289748 29 : isSerLysTrpIleLeuLysSerIleGlyIleTrpProIleIleLeuLysAspValAl : 47 !!! ! |||||||||||| !!||||||!!:!::|||.!!:!!!!!!.. !!.!:: euCysHisTrpIleLeuLysProIleGlyMetTyrProPheValPheSerArgAlaSe 289749 : TATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAG : 289805 48 : a<-><-><->LysPheLeuProLysIleValIleGlyIleSerAsnPheValLeuLeu : 63 ! ::! ! !! !:!::!!||| !:!!!!! !! :!!|||! ! rArgArgGluArgThrAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGln 289806 : CAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAG : 289862 64 : PheAlaIleIleProCysIleLeuTyrIleIleLeuGluGluLysAsnAsnLeuIleL : 83 ||| !|||:!!|||! !! !! !:!!:!!:!!!!!...!!:!!.:!!! !! PheIleIleValProPheSerHisHisValLeuPheSerAspAsnAspMetAsnThrP 289863 : TTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGT : 289922 84 : ysLeuLysLeuPheGlyLeuLeuMetPheCysSerIleAlaLeuMetLysHisTrpAl : 102 :!!||| !.!!|||! !|||! !||||||! !! !.!!!!!.!.|||:!!!! heValLysAsnLeuGlyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTy 289923 : TCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTA : 289979 103 : aLeuAlaTyrArgLysProLysIleLysAsnCysIleGluGlnIleGlnAsnAspTrp : 121 !!!!::! !:! !! !||| ..!|||:!::!!!!.|||:!!!..|||||| rPheSerMetLysGlySerAlaIleGlyArgCysValLysHisIleGluArgAspTrp 289980 : CTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGG : 290036 122 : GluGlnValLysLeuTyrGluAspArgGluMetMetLeuLysTyrGlyGlnValGlyA : 141 :!!..!:!!::: ! ! !!: !!|||! !!:||||||!:!|||! ! !:!!.!!| LysMetLeuArgAspGluAspHisArgValIleMetLeuArgTyrValThrMetSerA 290037 : AAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCC : 290096 142 : rgAsnLeuThrIleIleCysAlaValPheMetTyrThrGlyGlyIleIleTyrHisTh : 160 ||||||||! !! !:!:||||||:!!|||:!!|||! !||||||:!: !|||:!!|| rgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnTh 290097 : GGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACAC : 290153 161 : rIleLeuGlnTyrGluIleGlyThrPheIleAspGluTyrAsnHisThrIleLysPro : 179 |:!!:!!! !! !! ! !:!::!!! ||| ||||||!:!||| rValIleProLeuPheSerLysLysSerValAsnGly---AsnValThrIleArgPro 290154 : TGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGGT---AACGTGACTATCAGACCT : 290207 180 : ValIleTyrProThrTyrSerGlyLeuPheAsnValGlnLysSerProIleTyrGluL : 199 :!!! !|||||| !|||..!! !!!!|||:!!||||||||||||||| ||||||: LeuThrTyrProGlyTyrGluGluPhePheAspValGlnLysSerProAlaTyrGluI 290208 : CTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGA : 290267 200 : euIleTyrValLeuHisCysThrCysGlyTyrValMetTyrSerIleThrAlaGlyAl : 218 !!:!!!:! !:!!||||||..!! !! ! :!!! ! !:!|||||| !!.!|| leValPheCysMetHisCysValTyrValMetIleThrAlaAsnIleThrMetAlaAl 290268 : TCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGC : 290324 219 : aCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGlnIleAspIleValIle : 237 |! !.!!|||.!!.!!:!!|||!.!||||||.!!|||||||||||| ! ||| !! aTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThr 290325 : GTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACG : 290381 238 : AlaArgLeuAsnAspLeuValHisAlaLysTyrGlyLysGlyLysPheAsnLeuAsnA : 257 .!!||||||.!.||||||..! ! ! ! ! !! !||| ...:!!!:!! ThrArgLeuGluAspLeuThrLysArgGlyMetLeuLeuGluLys---GlyValSerA 290382 : ACGCGGCTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAGAAG---GGAGTGAGTG : 290438 258 : laArgLeuIleLysIleValGluHisHisLeuGlnIleLeuArg : 271 !|||||| :!!|||... !|||:!!:!!||||||!:! spArgLeuAlaValValValSerGlyHisValGluIleLeuLys 290439 : ATCGTTTGGCGGTTGTTGTGAGCGGTCACGTGGAGATCTTGAAG : 290482 vulgar: AmOr60 8 271 . KQ414889.1 289690 290482 + 359 M 39 117 G 0 9 M 125 375 G 1 0 M 79 237 G 1 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289691 290482 359 + . gene_id 14 ; sequence AmOr60 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289691 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289691 290482 . + . insertions 9 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289691 290482 359 + . alignment_id 14 ; Query AmOr60 ; Align 289691 9 117 ; Align 289817 48 375 ; Align 290192 174 237 ; Align 290429 254 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 313 Query range: 23 -> 271 Target range: 274383 -> 275136 24 : TyrValThrLysHisSerLysTrpIleLeuLysSerIleGlyIleTrpProIleIle< : 43 ||| ! !:!! !:!::!|||.!!|||||| !!|||||| ||||||:!! ! TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaS 274384 : TACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCT : 274441 44 : -><->LeuLysAspValAlaLysPheLeuProLysIleValIleGlyIleSerAsnPh : 60 !! ! ! !!! !::!.!!||| !! ! ::::::||| ::: !!! erProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCy 274442 : CGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTG : 274498 61 : eValLeuLeuPheAlaIleIleProCysIleLeuTyrIleIleLeuGluGluLysAsn : 79 ! !!:!!|||! !.!!:!!|||||| !!|||!!!:!!|||||||||! !!!::!!!:! sPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGluSer 274499 : CTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGT : 274555 80 : AsnLeuIleLysLeuLysLeuPheGlyLeuLeuMetPheCysSerIleAlaLeuMetL : 99 !! !:!:||||||||||||.!!|||! !||| !!! ! !|||!.! !!!:! LeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleA 274556 : CTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTA : 274615 100 : ysHisTrpAlaLeuAlaTyrArgLysProLysIleLysAsnCysIleGluGlnIleGl : 118 !.:!! .!!||| ! |||!.. !:!!|||:::..!|||:!:|||!!.!!:|| snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 274616 : ATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCA : 274672 119 : nAsnAspTrpGluGlnValLysLeuTyrGluAspArgGluMetMetLeuLysTyrGly : 137 |!..||||||..! |||! ! ||||||!:!:!!:!!||||||||| !!!.! nThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsnAla 274673 : AACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCG : 274729 138 : GlnValGlyArgAsnLeuThrIleIleCysAlaValPheMetTyrThrGlyGlyIleI : 157 :!!:!!|||||| !!:!!.!!|||.!!||||||!.!|||||| ! !|||! !:!! LysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuC 274730 : AAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCT : 274789 158 : leTyrHisThrIleLeuGlnTyrGluIleGlyThrPhe<->IleAspGluTyrAsnHi : 175 !||| !..!||| ! !!:! !!: !||| !! :!!! .!. ! !.!.. ysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrAr 274790 : GTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAG : 274846 176 : sThrIleLysProValIleTyrProThrTyrSerGlyLeuPheAsnValGlnLysSer : 194 .|||:!: ! !:!! ! ! !.!!|||!.! !:!! !! |||.!.! !||| gThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThrSer 274847 : AACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGT : 274903 195 : ProIleTyrGluLeuIleTyrValLeuHisCysThrCysGlyTyrValMetTyrSerI : 214 |||! !!|||:!!:!! !!.!! !!!.! !..!! |||!:!:!!:!! !!|||! ProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerS 274904 : CCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGA : 274963 215 : leThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGlnIl : 233 !.!!!.!||||||! !.!!|||||||||:!!|||!.!.!!||||||! !||||||:! erAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLe 274964 : GCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTT : 275020 234 : eAspIleValIleAlaArgLeuAsnAspLeuValHisAlaLysTyrGlyLysGlyLys : 252 :..!:!::!!!!: ! !!:!!!.!!!:!!!|||:!! !... ! :::...||| uSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsnLys 275021 : GAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaa : 275077 253 : PheAsnLeuAsnAlaArgLeuIleLysIleValGluHisHisLeuGlnIleLeuArg : 271 ::!..!:!! ! !:!!|||||||||||||||::!:!!|||||| AsnValTyrPheSerGluIleGlyValValValGluHisHisLeuArgValLeuArg 275078 : aatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTCAGG : 275136 vulgar: AmOr60 23 271 . KQ414889.1 274383 275136 + 313 M 19 57 G 0 6 M 127 381 G 0 3 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274384 275136 313 + . gene_id 15 ; sequence AmOr60 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274384 275136 . + . KQ414889.1 exonerate:protein2genome:local exon 274384 275136 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274384 275136 313 + . alignment_id 15 ; Query AmOr60 ; Align 274384 24 57 ; Align 274447 43 381 ; Align 274831 170 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 295 Query range: 23 -> 271 Target range: 262849 -> 263602 24 : TyrValThrLysHisSerLysTrpIleLeuLysSerIleGlyIleTrpProIle<->< : 42 ||| ! !:!! !:!::!|||:!:|||||| !!|||||| !||||||:!: TyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerA 262850 : TACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCG : 262907 43 : ->IleLeuLysAspValAlaLysPheLeuProLysIleValIleGlyIleSerAsnPh : 60 :!!..! :!!! !::!.!!:!! ! :!!:!!|||! !:!!!!! !!! laSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCy 262908 : CCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTG : 262964 61 : eValLeuLeuPheAlaIleIleProCysIleLeuTyrIleIleLeuGluGluLysAsn : 79 !:!!:!!|||! !.!!:!!||||||! !||||||:!!|||:!!||||||! :!!||| sLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsn 262965 : TCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAAT : 263021 80 : AsnLeuIleLysLeuLysLeuPheGlyLeuLeuMetPheCysSerIleAlaLeuMetL : 99 !! !!!:||||||:!!:!!.!!|||! !||| !! ! !:!!!.!:!!!!:! PheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleA 263022 : TTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCA : 263081 100 : ysHisTrpAlaLeuAlaTyrArgLysProLysIleLysAsnCysIleGluGlnIleGl : 118 !.:!! !||| ! !!.!!.. ! ! |||:!!..!|||:!::!!!!.:!:|| snTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGl 263082 : ATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCA : 263138 119 : nAsnAspTrpGluGlnValLysLeuTyrGluAspArgGluMetMetLeuLysTyrGly : 137 |.!.|||||| |||! !! ||||||!:!...!!:||||||||| !!!.! nGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAla 263139 : GGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCG : 263195 138 : GlnValGlyArgAsnLeuThrIleIleCysAlaValPheMetTyrThrGlyGlyIleI : 157 :!! !|||||| !!:!!.!! ! !||||||:!!|||||| ! |||.!! !!!: LysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetC 263196 : AAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGT : 263255 158 : leTyrHisThrIleLeuGlnTyrGluIleGlyThrPheIleAsp<->GluTyrAsnHi : 175 ! ! ! !:!! ! !!:! ! ! !..!.!! ||| .!. ! !.!.. ysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrAr 263256 : GCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAG : 263312 176 : sThrIleLysProValIleTyrProThrTyrSerGlyLeuPheAsnValGlnLysSer : 194 .! !:!!::: !:!! ! !|||..!|||!.!! !:!!.!! |||.!.! !!:! gIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThrAsn 263313 : AATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAAT : 263369 195 : ProIleTyrGluLeuIleTyrValLeuHisCysThrCysGlyTyrValMetTyrSerI : 214 |||! !!|||:!!.!! !!.! !!!.! ! !! |||!:!:!!:!: !:!!! ProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaT 263370 : CCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGA : 263429 215 : leThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGlnIl : 233 !|||!.!||||||! !|||:!!.!!|||:!!|||!.! !|||||||||||||||:! hrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLe 263430 : CAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTT : 263486 234 : eAspIleValIleAlaArgLeuAsnAspLeuValHisAlaLysTyrGlyLysGlyLys : 252 ::!!:!::!!!!::!! !!:!!!..!!:!!!|||:!! !... ! !:!!..!||| uAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLys 263487 : GAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAG : 263543 253 : PheAsnLeuAsnAlaArgLeuIleLysIleValGluHisHisLeuGlnIleLeuArg : 271 ! !! ! !.!!..!:!! ! !||||||||||||||||||::!:!!|||||| AsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeuArg 263544 : AATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTGAGG : 263602 vulgar: AmOr60 23 271 . KQ414889.1 262849 263602 + 295 M 18 54 G 0 6 M 130 390 G 0 3 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262850 263602 295 + . gene_id 16 ; sequence AmOr60 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262850 263602 . + . KQ414889.1 exonerate:protein2genome:local exon 262850 263602 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262850 263602 295 + . alignment_id 16 ; Query AmOr60 ; Align 262850 24 54 ; Align 262910 42 390 ; Align 263303 172 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 288 Query range: 23 -> 286 Target range: 236852 -> 237644 24 : TyrValThrLysHisSerLysTrpIleLeuLysSerIleGlyIleTrpProIleIleL : 43 ||| ! !:!! !:!::!||| :!!||||||||||||! !|||||| .!!! TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheS 236853 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCT : 236910 44 : euLysAspValAlaLysPheLeuProLysIleValIleGlyIleSerAsnPheValLe : 62 !..!:!!:!!! !!:! !:!! !!::!|||:!!! !! !|||!!! !! !!.!:! erSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIl 236911 : CGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAAT : 236967 63 : uLeuPheAlaIleIleProCysIleLeuTyrIleIleLeuGluGluLysAsnAsnLeu : 81 !||||||:!!|||||||||||| |||:!!:!!!!:||||||:!! !!.! !! ! eLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyr 236968 : ACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTAC : 237024 82 : IleLysLeuLysLeuPheGlyLeuLeuMetPheCysSerIleAlaLeuMetLysHisT : 101 ! |||:!!|||:!!.!!|||! !|||! !!! !.!!..!:!!!!:!..:!! ThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrT 237025 : ACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACA : 237084 102 : rpAlaLeuAlaTyrArgLysProLysIleLysAsnCysIleGluGlnIleGlnAsnAs : 120 !||| ! |||::: !! |||::::!!! !.!!.!.!!.!!::!!!.!|| hrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAs 237085 : CCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGA : 237141 121 : pTrpGluGlnValLysLeuTyrGluAspArgGluMetMetLeuLysTyrGlyGlnVal : 139 ||||..! !..! ||| :::|||:::||||||||||||!.!:!! !! pTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPhe 237142 : TTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTT : 237198 140 : GlyArgAsnLeuThrIleIleCysAlaValPheMetTyrThrGlyGlyIleIleTyrH : 159 .!!||| !! !.!!||| !|||.!!:!!|||!!::!! !||| !:!! !||| SerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrC 237199 : AGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATT : 237258 160 : isThrIleLeuGlnTyrGluIleGlyThrPheIleAspGluTyrAsnHisThrIleLy : 178 !..!!!: ! !! ! ! !..! !!:!:! !! ! !!!!. !|||||| ysValMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLe 237259 : GTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTT : 237315 179 : sProValIle<->TyrProThrTyrSerGlyLeuPheAsnValGlnLysSerProIle : 196 !! !|||:!: ! |||! !|||!.!||||||.!! |||.!.! !!:! !!!!: uArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMet 237316 : GCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATG : 237372 197 : TyrGluLeuIleTyrValLeuHisCysThrCysGlyTyrValMetTyrSerIleThrA : 216 !!!!::!!:!! !:!!! !!!.! ! !! !|||!:!:!! ! !!!:!! !.!! AsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaI 237373 : AACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGA : 237432 217 : laGlyAlaCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGlnIleAspIl : 235 !.!!!.! .!!|||.!!::! !.!...!:!!||||||! !||||||:!:..!:! leSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerVa 237433 : TCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGT : 237489 236 : eValIleAlaArgLeuAsnAspLeuValHisAlaLysTyrGlyLysGlyLysPheAsn : 254 :|||!!: ! !:!!.!.|||!!!||| !! ! ! !!!:!|||||| !:!! lValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAsp 237490 : GGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGAT : 237546 255 : LeuAsnAlaArgLeuIleLysIleValGluHisHisLeuGlnIleLeuArgPheSerA : 274 ! ! !! !..!:!! ! !|||||||||.!.||||||::!:!:|||!:!! !. HisPheAspGluIleProThrIleValGluGluHisLeuArgValLeuLys***ValC 237547 : CATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAGTAT : 237606 275 : laThrValGlnValIleLeuGlnGluValCysPheLeu : 286 .! !:!!.!.:!!||||||! ! !! ! |||||| ysLeuLeuAspLeuIleLeuLeuMetGlyValPheLeu 237607 : GTTTGTTGGATTTGATTTTGCTGATGGGTGTGTTTCTC : 237644 vulgar: AmOr60 23 286 . KQ414889.1 236852 237644 + 288 M 158 474 G 0 3 M 105 315 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236853 237644 288 + . gene_id 17 ; sequence AmOr60 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236853 237644 . + . KQ414889.1 exonerate:protein2genome:local exon 236853 237644 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 236853 237644 288 + . alignment_id 17 ; Query AmOr60 ; Align 236853 24 474 ; Align 237330 182 315 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 280 Query range: 13 -> 300 Target range: 194141 -> 196381 14 : ArgAsnLeuLysTyrLysGluAspIleAlaTyrValThrLysHisSerLysTrpIleL : 33 ||||||:!!!!.|||||| !|||! !! !|||!.!..!::! :!!||| !:!!| ArgAsnValAsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuL 194142 : CGCAACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTC : 194199 34 : euLysSerIleGlyIleTrpProIleIleLeuLysAspValAlaLysPheLeuProLy : 52 ||! ! !!|||||||||||||||! !... ! !! !!:! !!! !! ! euThrProIleGlyIleTrpProArgGluAspSerLeuArgAspArgValArgLeuPh 194200 : TAACACCGATCGGTATCTGGCCAAGGGAGGATTCTCTTCGCGACAGAGTCCGACTGTT : 194256 53 : sIleValIleGlyIleSerAsnPheValLeuLeuPheAlaIleIleProCysIleLeu : 71 ! !! !|||:!: ! ! !:!!:!!! !||| !:!::!!||| !:!::!! eAlaGlnThrGlyValValPheAlaLeuMetCysPheLeuLeuValProHisValIle 194257 : CGCTCAAACTGGCGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATC : 194313 72 : TyrIleIleLeuGluGluLysAsnAsnLeuIleLysLeuLysLeuPheGlyLeuLeuM : 91 |||! ! !!!!!!: :!!:!! !! ! :!!|||:!!.!!!.! !! !: TyrThrTyrPheAspCysGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnV 194314 : TACACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAG : 194373 92 : etPheCysSerIleAlaLeuMetLysHisTrpAlaLeuAlaTyrArgLysProLysIl : 110 !!||| !! !:!:|||:!!!!:||| !|||.!!:!! ! !.!!:! !:!!|| alPheSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnArgLysGluIl 194374 : TGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGAT : 194430 111 : eLysAsnCysIleGluGlnIleGlnAsnAspTrpGluGlnValLysLeuTyrGluAsp : 129 |!:! !|||:!: !:!!!!::!!!...!.!::..!.!.|||:!!! ! ! |||||| eArgPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCysGluGluAsp 194431 : CAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGAT : 194487 130 : ArgGluMetMetLeuLysTyrGlyGlnValGlyArgAsnLeuThrIleIleCysAlaV : 149 |||:!!:!!||| !!!.! !!.!:!!:!!|||||| !!!!|||! !:!:! ! !! ArgGlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuG 194488 : CGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGG : 194547 150 : alPheMetTyrThrGlyGlyIleIleTyrHisThrIleLeuGlnTyrGluIleGlyTh : 168 !.!! ||| !|||!.!:!: ||||||! !||||||! ! ! !! lyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluAr 194548 : GACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAG : 194604 169 : rPheIleAspGluTyrAsnHisThrIleLysProValIleTyrProThrTyrSerGly : 187 !.!!:!! ! ||| !!||| !||| ! !|||:!! !||| !!:! !!! !! ! gIleValLysGluAspAsnSerThrGlnIleProLeuProTyrLeuSerAsnTyrVal 194605 : GATTGTCAAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTT : 194661 188 : LeuPheAsnValGlnLysSerProIleTyrGluLeuIleTyrValLeuHisCysThrC : 207 !!!||| :!!:!! ! |||||||||||||||:!!! !!:!|||! !!!. ! PhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerGlnIleLeuI 194662 : TTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGA : 194721 208 : ysGlyTyrValMetTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheVa : 226 !.!! !:!!!!:! |||! !.!..!||| !! !.!!|||!.!||| !.!!:! leSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIl 194722 : TTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTAT : 194778 227 : lThrHisAlaCysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeuValHis : 245 !! !|||..!|||||| !.!!!!::!:..!! ! !|||:!! !!: !:!! ! eMetHisCysCysGlyLeuPheGluValThrSerArgArgMet---GluThrIleSer 194779 : TATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGATG---GAGACTATTTCT : 194832 246 : AlaLysTyrGlyLysGlyLysPheAsnLeuAsnAlaArgLeuIleLysIleValGluH : 265 !.! !|||||| :!!:!!...!.!||||||! ! :!!|||:!! ValProThrGlyLys---------AspIleArgGlyArgLeuArgAspValValGlnP 194833 : GTGCCCACTGGGAAG---------GATATTCGGGGTAGACTTAGGGACGTCGTTCAGT : 194883 266 : isHisLeuGlnIleLeu{Ar} >>>> Target Intron 1 >>>> {g}PheSe : 273 !||||||:!! !:!!{!:} 1391 bp {!}|||:! heHisLeuLysAlaIle{Ly}++ ++{s}PheAl 194884 : TTCATCTGAAAGCAATT{AA}gt.........................ag{a}tTCGC : 196298 274 : rAlaThrValGlnValIleLeuGlnGluValCysPheLeuGluPheIleGlySerIle : 292 !! !! !:!!:!! ! !|||.!. |||! !.!.! !|||.!.:!!|||!!!! ! aGluMetIleGluLysAlaLeuAsnIleValPheLeuSerGluMetLeuGlyCysThr 196299 : TGAAATGATCGAGAAAGCACTGAACATCGTGTTTCTATCAGAGATGCTTGGCTGCACT : 196355 293 : PheLeuIleCysLeuLeuGluTyr : 300 .!!:!!||||||!!!||||||||| IleIleIleCysPheLeuGluTyr 196356 : ATCATCATATGTTTCCTGGAATAC : 196381 vulgar: AmOr60 13 300 . KQ414889.1 194141 196381 + 280 M 227 681 G 1 0 M 9 27 G 3 0 M 17 51 S 0 2 5 0 2 I 0 1387 3 0 2 S 1 1 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194142 196381 280 + . gene_id 18 ; sequence AmOr60 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 194142 194902 . + . KQ414889.1 exonerate:protein2genome:local exon 194142 194902 . + . insertions 0 ; deletions 4 KQ414889.1 exonerate:protein2genome:local splice5 194903 194904 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 194903 196293 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 196292 196293 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 196294 196381 . + . KQ414889.1 exonerate:protein2genome:local exon 196294 196381 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194142 196381 280 + . alignment_id 18 ; Query AmOr60 ; Align 194142 14 681 ; Align 194823 242 27 ; Align 194850 254 51 ; Align 196295 272 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 268 Query range: 18 -> 200 Target range: 294672 -> 295227 19 : LysGluAspIleAlaTyrValThrLysHisSerLysTrpIleLeuLysSerIleGlyI : 38 !:!.!.|||:!:||| !! ! !|||:!!!!!::! !!:!:|||||| !!||||||: ArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyL 294673 : AGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTC : 294730 39 : leTrpProIleIleLeuLysAspValAlaLysPhe<-><-><->LeuProLysIleVa : 54 !!||||||:!!|||! !!.. !!..!::!|||.!. ||| !!! !|||:! euTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLe 294731 : TTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCT : 294787 55 : lIleGlyIleSerAsnPheValLeuLeuPheAlaIleIleProCysIleLeuTyrIle : 73 !|||!.! !!!!..!!...!:!!||||||!.!:!!:!:|||||| !! !!:! ! uIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCys 294788 : GATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGT : 294844 74 : IleLeuGluGluLysAsnAsnLeuIleLysLeuLysLeuPheGlyLeuLeuMetPheC : 93 :!!!!!.!.! |||||| :::|||:!!||||||.!.|||! !:!!:!:!:!! ValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrS 294845 : GTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACT : 294904 94 : ysSerIleAlaLeuMetLysHisTrpAlaLeuAlaTyrArgLysProLysIleLysAs : 112 !! !:!!:!!:!!:!:!:!:!! ! ..!|||!.!! !:!! !||| !.!!|||:! erMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHi 294905 : CTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCA : 294961 113 : nCysIleGluGlnIleGlnAsnAspTrpGluGlnValLysLeuTyrGluAspArgGlu : 131 !|||||||||.!.|||:!!|||||||||:!! !:!! ! ! ||| !!|||! ! sCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAla 294962 : TTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCG : 295018 132 : MetMetLeuLysTyrGlyGlnValGlyArgAsnLeuThrIleIleCysAlaValPheM : 151 !!:|||:!!||| !!!.!..!||| !!:!!..:!!|||:!! !! !.!!:!!.!.! IleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleI 295019 : ATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAA : 295078 152 : etTyrThrGlyGlyIleIleTyrHisThrIleLeuGlnTyrGluIleGlyThrPheIl : 170 !:|||!:!..!!.!:!: ||||||.!!|||::: ::: ......!!. leTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGl 295079 : TCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGA : 295135 171 : eAspGluTyrAsnHisThrIleLysProValIleTyrProThrTyrSerGlyLeuPhe : 189 :!!:!! ! |||:!!||||||::: !!:!! ! !||| !|||..! !!!! ! uAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheVal 295136 : GAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTA : 295192 190 : AsnValGlnLysSerProIleTyrGluLeuIle : 200 :!!!.! ! ...||||||! !||||||:!!||| AspAlaTyrSerSerProThrTyrGluIleIle 295193 : GACGCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: AmOr60 18 200 . KQ414889.1 294672 295227 + 268 M 31 93 G 0 9 M 151 453 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294673 295227 268 + . gene_id 19 ; sequence AmOr60 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294673 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294673 295227 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294673 295227 268 + . alignment_id 19 ; Query AmOr60 ; Align 294673 19 93 ; Align 294775 50 453 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 220 Query range: 304 -> 394 Target range: 224323 -> 224658 305 : AspTrpGluLeuLysAsnThrIleSerLeuThrThrTyrIleIleLeuLeuIleSerL : 324 :::|||... ...:!! !! !||| !..!||||||.!!|||||||||!!:|||| GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 325 : euThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuMetGluLys >>> : 342 ||||||||||||||||||||...||||||||||||||||||:!! |||::: euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln++ 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggt... : 224437 343 : > Target Intron 1 >>>> SerSerSerIleGlyLeuSerCysPheMetIleA : 353 65 bp ......|||||| ! !! !:!||||||| ++CysGluLysIleGlyGlnValSerTyrMetIleA 224438 : ......................agtgtgaaaaaattggacaAGTGTCGTACATGATCG : 224533 354 : spTrpTyrHisLeuProValLysThrIleGlnGlyLeuIleLeuIleIleAlaIleSe : 372 ||||||||!..||| !!! !!!.! !! !! ! !!! !|||||||||||||||!!:|| spTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 224534 : ACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGATGTC : 224590 373 : rAsnSerProThrLysIleSerAlaGlyGlyIleValAspLeuSerLeuPheThrPhe : 391 ||||||| !!! !|||:!:!!!||||||..!!!:|||!!:|||!!!||| !|||||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThrPhe 224591 : CAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACTTTC : 224647 392 : AlaAsnIle : 394 !.!:!!:!! GlyAspVal 224648 : GGTGACGTA : 224658 vulgar: AmOr60 304 394 . KQ414889.1 224323 224658 + 220 M 37 111 5 0 2 I 0 61 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224658 220 + . gene_id 20 ; sequence AmOr60 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224658 220 + . alignment_id 20 ; Query AmOr60 ; Align 224324 305 111 ; Align 224500 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 217 Query range: 300 -> 397 Target range: 210651 -> 211941 301 : TyrCysIleThrAspTrpGluLeuLysAsnThrIleSerLeuThrThrTyrIleIleL : 320 !:! !:!! !!!:|||!!:! !|||:!! !!|||||| ! !|||||||||:!!| PheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValL 210652 : TTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTAC : 210709 321 : euLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuMe : 339 |||||! !|||:!!||||||||||||||||||!!!|||||||||||||||:!!||| euLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAl 210710 : TCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGC : 210766 340 : tGluLys >>>> Target Intron 1 >>>> SerSerSerIleGlyLeuSerC : 349 |||:!: 999 bp !!! !!.!:!!||| !!.!! aGluGln++ ++ThrValLysValGlyGluLysS 210767 : TGAACAggt.........................agACAGTAAAAGTTGGAGAAAAGT : 211795 350 : ysPheMetIleAspTrpTyrHisLeuProValLysThrIleGlnGlyLeuIleLeuIl : 368 !!:!|||||||||||||||!..:!!|||! !|||! ! ! !! !:!! !|||!! erTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValValProLeuMe 211796 : CTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGAT : 211852 369 : eIleAlaIleSerAsnSerProThrLysIleSerAlaGlyGlyIleValAspLeuSer : 387 :|||:!!!!:|||:!!||| !!|||||||||!!!||||||..!:!!:!!! !|||||| tIleSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleValLeuSer 211853 : GATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTTCTTTCA : 211909 388 : LeuPheThrPheAlaAsnIleLeuLysThr : 397 :!! !!:!|||!.!:!!:!! ||| IleSerSerPheGlyAspValSerValThr 211910 : ATCAGTAGTTTCGGTGACGTAAGtgttaca : 211941 vulgar: AmOr60 300 397 . KQ414889.1 210651 211941 + 217 M 41 123 5 0 2 I 0 995 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210652 211941 217 + . gene_id 21 ; sequence AmOr60 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 210652 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210652 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211941 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211941 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210652 211941 217 + . alignment_id 21 ; Query AmOr60 ; Align 210652 301 123 ; Align 211774 342 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 207 Query range: 304 -> 394 Target range: 206050 -> 206401 305 : AspTrpGluLeuLysAsnThrIleSerLeuThrThrTyrIleIleLeuLeuIleSerL : 324 !!:|||||| !!!.||||||! !:!!:!!! !..!||||||! |||! !||||||! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 325 : euThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuMetGluLys >>> : 342 !|||||| !:!!|||||||||||||||||||||:!!||||||!!:!!::!! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 343 : > Target Intron 1 >>>> SerSerSerIleGlyLeuSerCysPheMetIleA : 353 81 bp !:! ! !:!:||||||!!!! !! !! !:!:: ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 354 : spTrpTyrHisLeuProValLysThrIleGlnGlyLeuIleLeuIleIleAlaIleSe : 372 !!||||||!.!|||||| !!:! ! !::..!:!!|||||||||||||||!!:|| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 373 : rAsnSerProThrLysIleSerAlaGlyGlyIleValAspLeuSerLeuPheThrPhe : 391 ||||! !|||! !|||:!!!!!|||||| !!!: !!!!::!!|||||| !!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 392 : AlaAsnIle : 394 .!!:!!:!! ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: AmOr60 304 394 . KQ414889.1 206050 206401 + 207 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 207 + . gene_id 22 ; sequence AmOr60 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 207 + . alignment_id 22 ; Query AmOr60 ; Align 206051 305 111 ; Align 206243 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 184 Query range: 304 -> 399 Target range: 272836 -> 273191 305 : AspTrpGluLeuLysAsnThrIleSerLeuThrThrTyrIleIleLeuLeuIleSerL : 324 :!:||| ! ! :!! ! |||||||||||||||.!!!!::!!|||||||||: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 325 : euThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuMetGluLysSer{S : 343 !:||||||||||||||||||::!|||||||||||||||:!!|||! !|||!:! !{! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArgVal{I 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGGTA{A : 272951 344 : e} >>>> Target Intron 1 >>>> {r}SerIleGlyLeuSerCysPheMet : 351 } 70 bp {!}...|||||| ! ! !!:!||| l}+- +-{e}LysIleGlyGluValValTyrMet 272952 : T}gc.........................aa{a}aaaattggcGAGGTAGTTTACATG : 273045 352 : IleAspTrpTyrHisLeuProValLysThrIleGlnGlyLeuIleLeuIleIleAlaI : 371 ! :!!||||||:!!||||||! !||| !|||! ! !|||||||||||||||:!!! ThrAsnTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerA 273046 : ACGAACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAA : 273105 372 : leSerAsnSerProThrLysIleSerAlaGlyGlyIleValAspLeuSerLeuPheTh : 390 !!!!!:! ! !! !||||||!!!|||||| !!|||||| !:!!|||:!!!:!|| rgCysSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrTh 273106 : GATGCAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACAC : 273162 391 : rPheAlaAsnIleLeuLysThrSerPhe : 399 ||||!.!:!!:!!! ... ||| rPheGlyAspValArgSerGlnLeuPhe 273163 : GTTCGGCGATGTACgttctcaattattt : 273191 vulgar: AmOr60 304 399 . KQ414889.1 272836 273191 + 184 M 38 114 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273191 184 + . gene_id 23 ; sequence AmOr60 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272952 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272952 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272953 272954 . + . intron_id 1 ; splice_site "gc" KQ414889.1 exonerate:protein2genome:local intron 272953 273022 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273021 273022 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 273023 273191 . + . KQ414889.1 exonerate:protein2genome:local exon 273023 273191 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273191 184 + . alignment_id 23 ; Query AmOr60 ; Align 272837 305 114 ; Align 273024 344 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 304 -> 341 Target range: 219328 -> 219439 305 : AspTrpGluLeuLysAsnThrIleSerLeuThrThrTyrIleIleLeuLeuIleSerL : 324 !!:|||:!!! !!!.:!!..!! ||| !..!||||||||||||||||||||||||| GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 325 : euThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuMetGluLys : 341 ||||||||||||||||||||...|||||||||||||||:!!:!! |||:!: euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: AmOr60 304 341 . KQ414889.1 219328 219439 + 125 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219439 125 + . gene_id 24 ; sequence AmOr60 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219439 125 + . alignment_id 24 ; Query AmOr60 ; Align 219329 305 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 296 -> 341 Target range: 214605 -> 214740 297 : LeuLeuGluTyrTyrCysIleThrAspTrpGluLeuLysAsnThrIleSerLeuThrT : 316 :::::::::::: ::: :!:|||.!.! !!!.||| !! !!!! !..!| IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 317 : hrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGl : 335 |||||:!::!:|||! !|||||||||||||||||||||||||||...||||||||||| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 336 : yGluLeuLeuMetGluLys : 341 |||||||:!! |||:!! yGluLeuValSerGluGln 214721 : CGAGCTTGTGTCTGAACAG : 214740 vulgar: AmOr60 296 341 . KQ414889.1 214605 214740 + 123 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 214740 123 + . gene_id 25 ; sequence AmOr60 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 214740 123 + . alignment_id 25 ; Query AmOr60 ; Align 214606 297 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 343 -> 400 Target range: 254280 -> 254451 344 : SerIleGlyLeuSerCysPheMetIleAspTrpTyrHisLeuProValLysThrIleG : 363 !.!:!!||| ! ! !!:!|||! !|||||||||:!!|||||| !!:!! !|||! LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 254281 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 254338 364 : lnGlyLeuIleLeuIleIleAlaIleSerAsnSerProThrLysIleSerAlaGlyGl : 382 ! !|||||||||||||||.!! !|||||| ! !..!:!!|||!!!|||||| euAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLy 254339 : TCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaa : 254395 383 : yIleValAspLeuSerLeuPheThrPheAlaAsnIleLeuLysThrSerPheVal : 400 ||| :::||||||!:!||||||!.!:!!:!! !:!!|||!:!.!!||| sIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeuVal 254396 : aatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTTGTT : 254451 vulgar: AmOr60 343 400 . KQ414889.1 254280 254451 + 123 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254281 254451 123 + . gene_id 26 ; sequence AmOr60 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254281 254451 . + . KQ414889.1 exonerate:protein2genome:local exon 254281 254451 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254281 254451 123 + . alignment_id 26 ; Query AmOr60 ; Align 254281 344 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 187 -> 252 Target range: 202712 -> 202907 188 : LeuPheAsnValGlnLysSerProIleTyrGluLeuIleTyrValLeuHisCysThrC : 207 :!!.!!:!!|||::! ! ||||||:!: !!|||:!!.!!!:! !:!!!.. !..!. IleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleValA 202713 : ATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAG : 202770 208 : ysGlyTyrValMetTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheVa : 226 .!! ! !:!!!!::!!.!!:!!|||!.!||||||||| !!|||.!!|||||||||!. laValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAl 202771 : CTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGC : 202827 227 : lThrHisAlaCysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeuValHis : 245 !..!|||! !|||||||||!!:|||:!!:!!!!:||| !!|||.!. !!|||:!! !! aValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMetAsp 202828 : GGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGAT : 202884 246 : AlaLysTyrGlyLysGlyLys : 252 !.!:::! ! !! !.!!||| GlyArgSerAspMetSerLys 202885 : GGTCGTTCGGATATGAGTAAA : 202907 vulgar: AmOr60 187 252 . KQ414889.1 202712 202907 + 118 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202713 202907 118 + . gene_id 27 ; sequence AmOr60 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202713 202907 . + . KQ414889.1 exonerate:protein2genome:local exon 202713 202907 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202713 202907 118 + . alignment_id 27 ; Query AmOr60 ; Align 202713 188 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 129 -> 164 Target range: 300015 -> 300120 130 : ArgGluMetMetLeuLysTyrGlyGlnValGlyArgAsnLeuThrIleIleCysAlaV : 149 ||| !!!:||||||!:!|||! ! :!!.!!||||||||||||! !:!:||||||| ArgThrIleMetLeuArgTyrValThrMetSerArgAsnLeuThrThrValCysAlaV 300016 : CGTACGATCATGTTGAGATACGTGACTATGAGCAGAAATCTGACGACCGTGTGCGCCG : 300073 150 : alPheMetTyrThrGlyGlyIleIleTyrHisThrIleLeuGlnTyr : 164 |||||:!:|||.!!||||||!!: |||||||||:!::!!|||!:! alPheLeuTyrAlaGlyGlyMetSerTyrHisThrValMetGlnPhe 300074 : TGTTTCTTTACGCAGGTGGTATGTCGTATCACACGGTGATGCAGTTC : 300120 vulgar: AmOr60 129 164 . KQ414889.1 300015 300120 + 118 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300016 300120 118 + . gene_id 28 ; sequence AmOr60 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 300016 300120 . + . KQ414889.1 exonerate:protein2genome:local exon 300016 300120 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300016 300120 118 + . alignment_id 28 ; Query AmOr60 ; Align 300016 130 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 304 -> 344 Target range: 291368 -> 291488 305 : AspTrpGluLeuLysAsnThrIleSerLeuThrThrTyrIleIleLeuLeuIleSerL : 324 !!:|||||| !!..:!!:!!|||.!!:!! !||||||:!!! !||||||! !|||! GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 325 : euThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuMetGluLysSerSe : 343 !!||||||||||||.!.|||!!!||||||:!!||||||||||||:!:! !:!! !|| heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGlnValSe 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAGGTAAG : 291483 344 : rSer : 344 |!!! rThr 291484 : TACT : 291488 vulgar: AmOr60 304 344 . KQ414889.1 291368 291488 + 115 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 291488 115 + . gene_id 29 ; sequence AmOr60 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 291369 291488 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291488 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 291488 115 + . alignment_id 29 ; Query AmOr60 ; Align 291369 305 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 339 -> 394 Target range: 234982 -> 235147 340 : GluLysSerSerSerIleGlyLeuSerCysPheMetIleAspTrpTyrHisLeuProV : 359 :!!:!!!!!!!!!.!:!!||| !!.! !:!|||! !!!:||||||!..|||||| GlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProH 234983 : CAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTC : 235040 360 : alLysThrIleGlnGlyLeuIleLeuIleIleAlaIleSerAsnSerProThrLysIl : 378 !|||||| !! ||||||:!!:!!||||||:!!! |||!:!! ! !! !||||| isLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIl 235041 : ATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAAT : 235097 379 : eSerAlaGlyGlyIleValAspLeuSerLeuPheThrPheAlaAsnIle : 394 |!!!|||||| !.!!:!!.!.:!!|||:!! ||||||!.!:!!:!: eThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235098 : CACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: AmOr60 339 394 . KQ414889.1 234982 235147 + 111 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234983 235147 111 + . gene_id 30 ; sequence AmOr60 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234983 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234983 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234983 235147 111 + . alignment_id 30 ; Query AmOr60 ; Align 234983 340 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 304 -> 341 Target range: 264537 -> 264648 305 : AspTrpGluLeuLysAsnThrIleSerLeuThrThrTyrIleIleLeuLeuIleSerL : 324 !!:|||||| ! ! ::: :::||||||||||||.!!!!::!!|||||||||: GluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerM 264538 : GAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATACTGATATCAA : 264595 325 : euThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuMetGluLys : 341 !! ! !|||||||||:!!:!!|||||||||||||||:!!|||! |||::: etCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGln 264596 : TGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcag : 264648 vulgar: AmOr60 304 341 . KQ414889.1 264537 264648 + 109 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264538 264648 109 + . gene_id 31 ; sequence AmOr60 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264538 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264538 264648 109 + . alignment_id 31 ; Query AmOr60 ; Align 264538 305 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 343 -> 394 Target range: 219518 -> 219671 344 : SerIleGlyLeuSerCysPheMetIleAspTrpTyrHisLeuProValLysThrIleG : 363 ...|||||| !:!||||||!!:||||||!..||| !!! !|||! !! ! LysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysLysL 219519 : aaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAAAGC : 219576 364 : lnGlyLeuIleLeuIleIleAlaIleSerAsnSerProThrLysIleSerAlaGlyGl : 382 !! !:!!|||! !||||||!!:||||||||| !!! !|||:!:!!!||||||.. euTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAs 219577 : TCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGGAAA : 219633 383 : yIleValAspLeuSerLeuPheThrPheAlaAsnIle : 394 !!!:|||!!:||||||:!! !||||||.!!:!!:!: nMetValGluLeuSerIleSerThrPheThrAspVal 219634 : TATGGTCGAATTGTCTATCAGCACTTTTACCGACGTG : 219671 vulgar: AmOr60 343 394 . KQ414889.1 219518 219671 + 107 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219519 219671 107 + . gene_id 32 ; sequence AmOr60 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219519 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219519 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219519 219671 107 + . alignment_id 32 ; Query AmOr60 ; Align 219519 344 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 337 -> 403 Target range: 292380 -> 292578 338 : LeuMetGluLysSerSerSerIleGlyLeuSerCysPheMetIleAspTrpTyrHisL : 357 :!!:!! ! :!!.!!|||..!|||!.!! !:!!! !!:! ! !!!:||||||:!!| ValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnL 292381 : GTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATC : 292438 358 : euProValLysThrIleGlnGlyLeuIleLeuIleIleAlaIleSerAsnSerProTh : 376 ||||| !::!! ! !!::! !:!!:!!|||:!::!!||||||!!!!!. !|||! euProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIl 292439 : TGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGAT : 292495 377 : rLysIleSerAlaGlyGlyIleValAspLeuSerLeuPheThrPheAlaAsnIleLeu : 395 !|||:!!!!!|||||| !||| !!! !||||||||| !||||||!.! !:!!! ! eLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArg 292496 : CAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGT : 292552 396 : LysThrSerPheValTyrLeuAsn : 403 :!!:!!!.!.!.|||! :!!:!! GluSerLysLeuValLeuIleHis 292553 : GAATCAAAACTAGTCTTGATACAC : 292578 vulgar: AmOr60 337 403 . KQ414889.1 292380 292578 + 106 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292381 292578 106 + . gene_id 33 ; sequence AmOr60 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292381 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292381 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292381 292578 106 + . alignment_id 33 ; Query AmOr60 ; Align 292381 338 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 304 -> 341 Target range: 277371 -> 277482 305 : AspTrpGluLeuLysAsnThrIleSerLeuThrThrTyrIleIleLeuLeuIleSerL : 324 !!:|||... !!..:!!..! !!!:!!||||||:!!.!!!!::!!|||||||||: GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 325 : euThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuMetGluLys : 341 !: |||||||||||| !:!!|||||||||||||||:!!|||! |||:!! etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAG : 277482 vulgar: AmOr60 304 341 . KQ414889.1 277371 277482 + 102 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277482 102 + . gene_id 34 ; sequence AmOr60 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277482 102 + . alignment_id 34 ; Query AmOr60 ; Align 277372 305 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 287 -> 347 Target range: 297409 -> 297589 288 : PheIleGlySerIlePheLeuIleCysLeuLeuGluTyrTyrCysIleThrAspTrpG : 307 ||||||! ! ||| ||| |||:::|||::: ... |||: PheIleAspLeuIleValLeuLysIle***LeuLysTyrHisPhePheGlnGlyTrpL 297410 : TTCATCGATCTtatagttttaaaaatatagttaaaatatcatttttttcaggGATGGA : 297467 308 : luLeuLysAsnThrIleSerLeuThrThrTyrIleIleLeuLeuIleSerLeuThrPh : 326 !! ! ! :!!! !|||! ! !..!||| ! ! !!!!:!!:!!|||:!!||||| ysThrHisAspMetIlePheGlyValThrIleGlyGlyPheMetLeuSerIleThrPh 297468 : AAACTCACGATATGATTTTTGGGGTAACGATCGGCGGTTTCATGCTTTCGATCACTTT : 297524 327 : eAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuMetGluLysSerSerSerIle : 345 ||||||||||:!!||||||:!! !||||||||||||:!:|||:!! ! !!!.!:!: eAsnIlePheValLeuCysHisAlaGlyGluLeuLeuValGluGluValProLysVal 297525 : TAATATATTCGTATTATGTCATGCAGGTGAACTTCTTGTCGAGGAGGTACCGAAAGTG : 297581 346 : GlyLeu : 347 !||| PheLeu 297582 : TTTCTA : 297589 vulgar: AmOr60 287 347 . KQ414889.1 297409 297589 + 101 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297410 297589 101 + . gene_id 35 ; sequence AmOr60 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297410 297589 . + . KQ414889.1 exonerate:protein2genome:local exon 297410 297589 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297410 297589 101 + . alignment_id 35 ; Query AmOr60 ; Align 297410 288 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1440 Query range: 0 -> 394 Target range: 303127 -> 305783 1 : MetHisProIleThrLeuAsnGluSerAspCysLysAlaArgAsnLeuLysTyrLysG : 20 ||||||! ! !! !! !.!.:!!! !||| ! ||| !!|||||||||!!.||||||: MetHisLeuSerMetArgGluGlnIleAspArgLysProArgAsnLeuAsnTyrLysL 303128 : ATGCATCTCTCTATGCGAGAGCAGATCGATCGGAAACCGCGGAATTTGAATTACAAGA : 303185 21 : luAspIleAlaTyrValThrLysHisAsnLysTrpIleLeuLysSerIleGlyIleTr : 39 !!||||||!.!|||||||||||||||!:!||||||||||||||||||:!!|||||||| ysAspIleValTyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTr 303186 : AAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTG : 303242 40 : pProSerIlePheLysAspValSerLysPheLeuProLysIleMetPheGlyLeuCys : 58 ||||:!!:!:!!. ! !!:..!:!! !|||||||||||||||! .!!|||||| !! pProAlaValLeuAspGluThrAlaGlyPheLeuProLysIleThrIleGlyLeuSer 303243 : GCCAGCCGTGTTGGACGAAACCGCAGGATTCCTACCAAAAATCACCATTGGACTCAGT : 303299 59 : AsnPheValLeuPhePheAlaIleIleProCysIleLeuTyrIleValIleGluGluA : 78 |||!!.||||||!!.|||.!!:!:|||||||||||||||:!!|||:!!.!!|||:!!! AsnLeuValLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnL 303300 : AATTTGGTTCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAA : 303359 79 : snAspThrMetIleArgPheLysLeuPheGlyLeuLeuSerPheCysLeuValAlaLe : 97 !.||||||!!:||||||!!.||||||||||||||||||||||||||||||:!!:!!|| ysAspThrIleIleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLe 303360 : AGGATACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTT : 303416 98 : uIleLysTyrTrpThrLeuLeuTyrArgLysSerArgIleLysAsnCysValGluGln : 116 |!!:|||||||||.!!||| ! |||||| !!|||||||||.!.|||:!!|||:!! uMetLysTyrTrpAlaLeuAlaThrArgLysProArgIleLysGluCysIleGluGlu 303417 : GATGAAGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAG : 303473 117 : IleTrpIleAspTrpGluGln >>>> Target Intron 1 >>>> ValGluLe : 126 :!: ! !||||||:!!:!! 938 bp ||||||! ValGlnSerAspTrpLysGlu++ ++ValGluSe 303474 : GTGCAAAGTGATTGGAAAGAGgt.........................agGTGGAATC : 304441 127 : uTyrGluAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuMetIle : 145 ! !..!|||||||||||||||||||||||||||||||||||||||||||||! !||| rLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIle 304442 : TCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATA : 304498 146 : IleCysAlaMetPheThrTyrThrGlyGlyThrIlePheHisThrIleLeuGlnTyrL : 165 |||||||||!!:|||! !||||||||||||||||||!:!||||||:!!:!!|||!:! IleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheA 304499 : ATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCG : 304558 166 : ysValGlyThrPheIleAspGluTyrAsnArgThrIleLysProValIleTyrProTh : 184 !..!||||||!:!:!:|||||||||||||||||||||||||||:!!:!!|||||||| laThrGlyThrTyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProTh 304559 : CGACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCAC : 304615 185 : rTyrAsnGlyLeuPheAsnValGlnArgSerProIleTyrGluPheValTyrIleLeu : 203 ||||!:!!.!||||||:!!||||||! !|||||||||||||||!!.||||||.!!:!! rTyrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheVal 304616 : CTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTT : 304672 204 : HisCysMetCysGlyTyrValMetHisSerValThrAlaGlyAlaCysGlyLeuThrA : 223 |||||||||||||||||||||!!::!!|||:!!|||||||||||||||||||||.!!| HisCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaA 304673 : CATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCG : 304732 224 : laLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValIleAlaArgLeuAsnAs : 242 |||||||||||||||||||||||||||||||||||||||||!!::!!||||||..!|| laLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAs 304733 : CTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGA : 304789 243 : pLeuIleHisGlyLysTyrSerLysGluLysIleAsnLeuAsnAlaArgPheThrLys : 261 ||||:!!:!! |||||||||..! !:!!|||:!! !|||!!.! !:!! pLeuValAsn---------SerLysGluSerSerAspLeuAspLysArgLeuIleGlu 304790 : TCTTGTCAAC---------AGCAAAGAATCATCTGATTTAGATAAACGATTAATAGAA : 304837 262 : IleIleGluHisHisLeuArgIleLeu{Ar} >>>> Target Intron 2 >>>> : 271 |||:!!|||||||||||||||||||||{||} 70 bp IleValGluHisHisLeuArgIleLeu{Ar}++ 304838 : ATTGTTGAGCATCATTTGCGAATTTTA{AG}gt......................... : 304871 272 : {g}PheSerAlaThrValGlnGluValLeuGlnGluLeuCysPheLeuGluCysIl : 289 {|}|||||||||! !|||||| !||||||||||||:!!||||||||||||! !|| ++{g}PheSerAlaIleValGlnThrValLeuGlnGluValCysPheLeuGluPheIl 304872 : ag{A}TTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTTCTTGGAATTCAT : 304991 290 : eGlySerThrPheLeuIleCysLeuLeuGluTyrTyrCysIleThr >>>> Targe : 305 ||||||||||!!.||||||||||||||||||||||||||||||||| eGlySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysIleThr++ 304992 : TGGTTCTACCTTACTGATATGTCTACTTGAATACTACTGTATAACGgt.......... : 305041 306 : t Intron 3 >>>> AspTrpGluLeuAsnAsnThrIleSerLeuThrThrTyrIl : 318 62 bp ||||||||| !!:!||||||:!!|||||||||||||||! ++AspTrpGluSerSerAsnThrValSerLeuThrThrTyrTh 305042 : ...............agGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATAC : 305140 319 : eIleLeuLeuIleSerLeuIlePheAsnIlePheIleLeuCysTyrIleGlyGluLeu : 337 !:!:||||||||||||:!!! !|||||||||||||||||||||||||||||||||:!! rValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIle 305141 : AGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATT : 305197 338 : LeuMetGluLys >>>> Target Intron 4 >>>> SerSerAsnIleGlyLe : 347 |||||||||||| 413 bp ||||||!:!:!!||||| LeuMetGluLys++ ++SerSerSerValGlyLe 305198 : CTTATGGAAAAGgt.........................agAGCAGTAGCGTTGGATT : 305640 348 : uSerCysPheMetIleAspTrpTyrTyrLeuProSerLysThrIleArgGlyLeuIle : 366 ||||||||||||||||..!||||||:!!||||||!!!|||||||||!.!||||||||| uSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIle 305641 : ATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATT : 305697 367 : LeuMetIleAlaIleSerSerAsnProThrLysIleSerAlaGlyGlyIleValAspL : 386 |||!!:||||||!!:||||||||||||.!!||||||||||||||| !:!!||||||| LeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysValValAspL 305698 : TTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATT : 305757 387 : euSerLeuSerThrPheGlyAsnVal : 394 |||||||||||||||||||||||||| euSerLeuSerThrPheGlyAsnVal 305758 : TATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: AmOr59 0 394 . KQ414889.1 303127 305783 + 1440 M 123 369 5 0 2 I 0 934 3 0 2 M 122 366 G 3 0 M 22 66 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 37 111 5 0 2 I 0 409 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303128 305783 1440 + . gene_id 1 ; sequence AmOr59 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303128 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303128 303496 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304868 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 2 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303128 305783 1440 + . alignment_id 1 ; Query AmOr59 ; Align 303128 1 369 ; Align 304435 124 366 ; Align 304801 249 66 ; Align 304940 272 99 ; Align 305101 305 111 ; Align 305625 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 625 Query range: 8 -> 403 Target range: 289690 -> 292578 9 : SerAspCysLysAlaArgAsnLeuLysTyrLysGluAspIleAlaTyrValThrLysH : 28 |||..! !::: !! !||| !:::|||:!! !|||||| !|||..! !:!! SerSerAspArgProSerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluL 289691 : AGCAGCGATCGTCCGTCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAAT : 289748 29 : isAsnLysTrpIleLeuLysSerIleGlyIleTrpProSerIlePheLysAspValSe : 47 ! ! |||||||||||| !!||||||!!:!::|||! !:!!|||!.. !!.!|| euCysHisTrpIleLeuLysProIleGlyMetTyrProPheValPheSerArgAlaSe 289749 : TATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAG : 289805 48 : r<-><-><->LysPheLeuProLysIleMetPheGlyLeuCysAsnPheValLeuPhe : 63 | ::! ! !! !:!::!!.!! !:!!||| !! :!!||| rArgArgGluArgThrAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGln 289806 : CAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAG : 289862 64 : PheAlaIleIleProCysIleLeuTyrIleValIleGluGluAsnAspThrMetIleA : 83 ||| !|||:!!|||! !! !! !:!!:!!:!!.!!...!!:||||||! !! ! PheIleIleValProPheSerHisHisValLeuPheSerAspAsnAspMetAsnThrP 289863 : TTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGT : 289922 84 : rgPheLysLeuPheGlyLeuLeuSerPheCysLeuValAlaLeuIleLysTyrTrpTh : 102 ! !!||| !.!!|||! !|||!!!|||||||||..!.!!!!!.!!||||||!! heValLysAsnLeuGlyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTy 289923 : TCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTA : 289979 103 : rLeuLeuTyrArgLysSerArgIleLysAsnCysValGluGlnIleTrpIleAspTrp : 121 !!!! ! !:! ||| !||| ..!||||||:!!!!.||| !! !|||||| rPheSerMetLysGlySerAlaIleGlyArgCysValLysHisIleGluArgAspTrp 289980 : CTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGG : 290036 122 : GluGlnValGluLeuTyrGluAspArgGluMetMetLeuLysTyrGlyGlnMetGlyA : 141 :!!..!:!!... ! ! !!: !!|||! !!:||||||!:!|||! ! !|||.!!| LysMetLeuArgAspGluAspHisArgValIleMetLeuArgTyrValThrMetSerA 290037 : AAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCC : 290096 142 : rgAsnLeuMetIleIleCysAlaMetPheThrTyrThrGlyGlyThrIlePheHisTh : 160 ||||||||!!:! !:!:||||||!!:||| !|||! !|||||| ! !!:!:!!|| rgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnTh 290097 : GGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACAC : 290153 161 : rIleLeuGlnTyrLysValGlyThrPheIleAspGluTyrAsnArgThrIleLysPro : 179 |:!!:!!! !! ! !! ! !:!::!!! ||| !||||||!:!||| rValIleProLeuPheSerLysLysSerValAsnGly---AsnValThrIleArgPro 290154 : TGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGGT---AACGTGACTATCAGACCT : 290207 180 : ValIleTyrProThrTyrAsnGlyLeuPheAsnValGlnArgSerProIleTyrGluP : 199 :!!! !|||||| !|||.!.! !!!!|||:!!||||||!:!|||||| ||||||. LeuThrTyrProGlyTyrGluGluPhePheAspValGlnLysSerProAlaTyrGluI 290208 : CTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGA : 290267 200 : heValTyrIleLeuHisCysMetCysGlyTyrValMetHisSerValThrAlaGlyAl : 218 !!|||!:! !:!!||||||:!:! !! ! :!!! ! !:!:!!||| !!.!|| leValPheCysMetHisCysValTyrValMetIleThrAlaAsnIleThrMetAlaAl 290268 : TCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGC : 290324 219 : aCysGlyLeuThrAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValIle : 237 |! !.!!||||||.!!:!!||||||||||||.!!|||||||||||| ! ||| !! aTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThr 290325 : GTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACG : 290381 238 : AlaArgLeuAsnAspLeuIleHisGlyLysTyrSerLysGluLysIleAsnLeuAsnA : 257 .!!||||||.!.||||||! ! ! !! ! ! !|||||| ...:!!!:!! ThrArgLeuGluAspLeuThrLysArgGlyMetLeuLeuGluLys---GlyValSerA 290382 : ACGCGGCTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAGAAG---GGAGTGAGTG : 290438 258 : laArgPheThrLysIleIleGluHisHisLeuArgIleLeu{Ar} >>>> Target : 271 !|||!!..!! :!!:!:... !|||:!!..!||||||{!:} 6 spArgLeuAlaValValValSerGlyHisValGluIleLeu{Ly}++ 290439 : ATCGTTTGGCGGTTGTTGTGAGCGGTCACGTGGAGATCTTG{AA}gt........... : 290484 272 : Intron 1 >>>> {g}PheSerAlaThrValGlnGluValLeuGlnGluLeuCys : 284 55 bp {!}|||!!! !! !:!!:!!...!.!|||!!.|||:!!! ! ++{s}PheThrArgMetIleGluSerAlaLeuHisGluIlePhe 290485 : ..............ag{A}TTCACGAGGATGATCGAAAGCGCGTTGCATGAAATATTC : 291174 285 : PheLeuGluCysIleGlySerThrPheLeuIleCysLeuLeuGluTyrTyrCysIleT : 304 !!.:!!||| |||! !|||||| ! |||:!!||||||:!!|||||| !! !!:! LeuIleGluValIleValSerThrValLeuLeuCysLeuIleGluTyrLeuLeuMetM 291175 : TTGATAGAAGTAATAGTATCCACTGTGTTACTATGCTTGATCGAATATCTCTTAATGA : 291234 305 : hr >>>> Target Intron 2 >>>> AspTrpGluLeuAsnAsnThrIleSer : 313 ! 132 bp !!:|||||| !!:!:!!:!!|||.!! et++ ++GluTrpGluSerSerAspSerIleGly 291235 : TGgt.........................agGAATGGGAGAGTAGCGATTCGATCGGG : 291393 314 : LeuThrThrTyrIleIleLeuLeuIleSerLeuIlePheAsnIlePheIleLeuCysT : 333 :!! !||||||:!!! !||||||! !|||!!!! !|||||||||.!.|||!!!|||| IleLeuThrTyrValThrLeuLeuThrSerPheThrPheAsnIleLeuIlePheCysT 291394 : ATATTAACATACGTCACTCTCCTCACTTCTTTCACTTTCAACATACTGATATTCTGTT : 291453 334 : yrIleGlyGluLeuLeuMetGluLys >>>> Target Intron 3 >>>> Ser : 342 ||:!!||||||||||||:!:! !:!! 913 bp .!! yrValGlyGluLeuLeuLeuGlyGln++ ++Gly 291454 : ACGTTGGCGAACTTCTTCTTGGACAGgt.........................agGGT : 292393 343 : SerAsnIleGlyLeuSerCysPheMetIleAspTrpTyrTyrLeuProSerLysThrI : 362 |||.!.|||!.!! !:!!! !!:! ! !!!:|||||| !!||||||!!!::!! ! SerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgArgLysA 292394 : AGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGG : 292453 363 : leArgGlyLeuIleLeuMetIleAlaIleSerSerAsnProThrLysIleSerAlaGl : 381 !|||! !:!!:!!|||:!!:!!||||||!!!!.!:!!|||! !|||:!!!!!||||| laArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuThrAlaGl 292454 : CTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGG : 292510 382 : yGlyIleValAspLeuSerLeuSerThrPheGlyAsnValLeuLysThrSerPheAla : 400 | !||| !!! !|||||||||!:!||||||||| !|||! !:!!:!!!.!.!.!.! yLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSerLysLeuVal 292511 : CAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCAAAACTAGTC : 292567 401 : TyrLeuAsn : 403 ! :!!:!! LeuIleHis 292568 : TTGATACAC : 292578 vulgar: AmOr59 8 403 . KQ414889.1 289690 292578 + 625 M 39 117 G 0 9 M 125 375 G 1 0 M 79 237 G 1 0 M 17 51 S 0 2 5 0 2 I 0 651 3 0 2 S 1 1 M 33 99 5 0 2 I 0 128 3 0 2 M 37 111 5 0 2 I 0 909 3 0 2 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289691 292578 625 + . gene_id 2 ; sequence AmOr59 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 289691 290481 . + . KQ414889.1 exonerate:protein2genome:local exon 289691 290481 . + . insertions 9 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 290482 290483 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 290482 291136 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 291135 291136 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 291137 291236 . + . KQ414889.1 exonerate:protein2genome:local exon 291137 291236 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291237 291238 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291237 291368 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 291367 291368 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289691 292578 625 + . alignment_id 2 ; Query AmOr59 ; Align 289691 9 117 ; Align 289817 48 375 ; Align 290192 174 237 ; Align 290429 254 51 ; Align 291138 272 99 ; Align 291369 305 111 ; Align 292393 342 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 518 Query range: 17 -> 340 Target range: 226912 -> 228355 18 : TyrLysGluAspIleAlaTyrValThrLysHisAsnLysTrpIleLeuLysSerIleG : 37 |||:!!||| !!:!: ! !! !:!! |||:::|||:!:|||||| !!:!!| TyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuG 226913 : TATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCG : 226970 38 : lyIleTrpProSerIlePheLysAsp<-><->ValSerLysPheLeuProLysIleMe : 54 |||||||||||||| !|||..! :!!.!!!:!! !!!! !! !:!:|| lyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMe 226971 : GTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGAT : 227027 55 : tPheGlyLeuCysAsnPheValLeuPhePheAlaIleIleProCysIleLeuTyrIle : 73 | ! !|||||| !! :!!:!! !|||! !:!::!! !! !! !||||||:!: tGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrVal 227028 : GGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTG : 227084 74 : ValIleGluGluAsnAspThrMetIleArgPheLysLeuPheGlyLeuLeuSerPheC : 93 |||:!!|||! !!!.! !.!! ! !! !.!.|||:!!.!!|||! !:!!||||||! ValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPheP 227085 : GTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCT : 227144 94 : ysLeuValAlaLeuIleLysTyrTrpThrLeuLeuTyrArgLysSerArgIleLysAs : 112 ! !:!!:!!|||:!!||||||! ! !||| !!:!!.!:!!..! !||| .! heAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGl 227145 : TCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGA : 227201 113 : nCysValGluGlnIleTrpIleAspTrpGluGlnValGluLeuTyrGluAspArgGlu : 131 .|||||||||!:!||| ||||||:!!.!.:!!..!! ! |||||||||.!. uCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsn 227202 : GTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAAC : 227258 132 : MetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuMetIleIleCysAlaMetPheT : 151 :!!|||:!!! !|||!.! ! ||||||!!.|||!!:! !||||||.!!.!.|||. ValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheV 227259 : GTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCG : 227318 152 : hrTyrThrGlyGlyThrIlePheHisThrIleLeuGlnTyrLysValGlyThrPhe<- : 170 .!!:!!::... ......|||:::! !:!!:!!! !!!.!.!|||!:! !! alPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerValAl 227319 : TCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGC : 227375 171 : >IleAspGluTyrAsnArgThrIleLysProValIleTyrProThrTyrAsnGlyLeu : 188 ! !!:!!: |||!.!!:! !! ! !:!! !:!||| ! !!. !:!! aThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIleIle 227376 : AACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATC : 227432 189 : PheAsnValGlnArgSerProIleTyrGluPheValTyrIleLeuHisCysMetCysG : 208 !:!!|||!:: !||||||.!! !!|||.!! !!!:! :!!!!.! !:!: | AlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValThrG 227433 : GCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAG : 227492 209 : lyTyrValMetHisSerValThrAlaGlyAlaCysGlyLeuThrAlaLeuPheAlaTh : 227 || !|||:!!|||.!!||||||:!!!.!||||||.!!:!!.!!||||||.!!|||.. lyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaVa 227493 : GTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGT : 227549 228 : rHisAlaCysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeuIleHisGly : 246 !|||||||||||||||!!:!!::!::!!:!::!! !!|||... !!|||||| !!||| lHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGly 227550 : TCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGC : 227606 247 : LysTyrSerLysGluLysIleAsnLeuAsnAlaArgPheThrLysIleIleGluHisH : 266 !:! ..!! !...||| !..|||:!!! !|||.!!.!!!..|||:!! |||| ArgAlaAspMetSerLys---ThrLeuAspAspArgIleAlaSerIleValThrHisH 227607 : AGAGCGGATATGAGCAAA---ACACTGGATGATAGAATCGCTAGCATCGTCACTCACC : 227663 267 : isLeuArgIleLeu{Ar} >>>> Target Intron 1 >>>> {g}PheSerAl : 274 ||:!!|||||||||{!.} 396 bp {!}||| !|| isValArgIleLeu{As}++ ++{n}PheLeuAl 227664 : ACGTTCGAATATTG{AA}gt.........................ag{C}TTTCTGGC : 228083 275 : aThrValGlnGluValLeuGlnGluLeuCysPheLeuGluCysIleGlySerThrPhe : 293 | !:!!:!!:!!..!:!!|||:!!:!!..!|||:!!|||! !:!!|||!!!|||.!. aLeuIleGluLysThrMetGlnGlnIleAlaPheValGluPheLeuGlyCysThrIle 228084 : CCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGTACAATA : 228140 294 : LeuIleCysLeuLeuGluTyrTyrCysIleThr >>>> Target Intron 2 >> : 305 :!!:!:||||||:!!||||||||| !|||||| 72 bp IleLeuCysLeuIleGluTyrTyrIleIleThr++ 228141 : ATTCTGTGCCTCATCGAGTATTACATCATAACGgt....................... : 228178 306 : >> AspTrpGluLeuAsnAsnThrIleSerLeuThrThrTyrIleIleLeuLeuIle : 322 !!:|||.!.! !!!..!. !! !! ! !..!|||||| ! ||||||:!! ++GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeu 228179 : ..agGAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTA : 228299 323 : SerLeuIlePheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuMetGlu : 340 |||!!!! |||||||||||||||...|||||||||||||||:!!:!! ||| SerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGlu 228300 : TCCTTTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAA : 228355 vulgar: AmOr59 17 340 . KQ414889.1 226912 228355 + 518 M 28 84 G 0 6 M 124 372 G 0 3 M 83 249 G 1 0 M 17 51 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226913 228355 518 + . gene_id 3 ; sequence AmOr59 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226913 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226913 227679 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228355 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228355 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226913 228355 518 + . alignment_id 3 ; Query AmOr59 ; Align 226913 18 84 ; Align 227003 46 372 ; Align 227378 170 249 ; Align 227627 254 51 ; Align 228077 272 99 ; Align 228248 305 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 474 Query range: 9 -> 341 Target range: 232417 -> 234914 10 : AspCysLysAlaArgAsnLeuLysTyrLysGluAspIleAlaTyrValThrLysHisA : 29 |||! ... ! !!..|||!!. !! !..!||| !! !||| !! !:!! | AspSerSerArgAspThrLeuAsnAlaThrArgAspTyrGluTyrSerIleGlnValA 232418 : GACTCGTCCCGCGACACGTTGAACGCTACGCGAGACTACGAGTACAGCATCCAGGTGA : 232475 30 : snLysTrpIleLeuLysSerIleGlyIleTrpProSerIlePheLysAsp<-><->Va : 46 ||:::|||.!!|||! ! !!!!:||| !|||||| !!:!! :!! ! !. snArgTrpPheLeuThrProMetGlyAlaTrpProArgValThrGluThrSerArgAl 232476 : ACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGC : 232532 47 : lSerLysPheLeuProLysIleMetPheGlyLeuCysAsnPheValLeuPhePheAla : 65 !..!:!!.!.||| !!|||:!::!! ! !|||:!!! !:!!:!!.!!! !:!! aGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHisSerLeuMetIleSerSer 232533 : CCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCG : 232589 66 : IleIleProCysIleLeuTyrIleValIleGluGluAsnAspThrMetIleArgPheL : 85 |||:!!||||||||||||!:!|||:!!.!!|||!!:!....! ! ! !|||.!.| IleValProCysIleLeuPheIleLeuPheGluAspThrSerLeuGluGluArgMetL 232590 : ATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGA : 232649 86 : ysLeuPheGlyLeuLeuSerPheCysLeuValAlaLeuIleLysTyrTrpThrLeuLe : 104 ||! !.!!|||! !:!!||| !! !|||:!!!.! !:!:!!.|||!! !||||| ysSerIleGlyProMetSerHisPheLeuMetGlyGluLeuAsnTyrCysCysLeuLe 232650 : AGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTT : 232706 105 : uTyrArgLysSerArgIleLysAsnCysValGluGlnIleTrpIleAspTrpGluGln : 123 | !:! !!:! !||| !!||||||||||||:!: ||||||..!.!. uAlaLysAlaAsnAspIleLeuTyrCysValGluGlnValLysGlnAspTrpArgAsn 232707 : GGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAAC : 232763 124 : ValGluLeuTyrGluAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnL : 143 |||:!! ! !! !!|||!!::!!||||||||| !!!.!:!!:!:||||||:::: ValLysLysProValHisArgAspLeuMetLeuLysAsnAlaLysLeuGlyArgSerI 232764 : GTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGA : 232823 144 : euMetIleIleCysAlaMetPheThrTyrThrGlyGlyThrIlePheHisThrIleLe : 162 !! !|||..!|||.!.! !! !:!!||||||! ! ! ! !.!.! !:!! leAlaCysIleAlaAlaPheCysMetHisThrGlyValGlySerAspGluIleValTh 232824 : TAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCGGCTCCGACGAAATAGTCAC : 232880 163 : uGlnTyrLysValGlyThrPhe<->IleAspGluTyrAsnArgThrIleLysProVal : 180 ! ! !::::!!.!!|||||| :!:! .!. ! !:! !:!!!!: ! |||:!! rGlyLeuArgMetSerThrPheTyrValGlyAsnGluSerTyrSerMetTyrProLeu 232881 : AGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTA : 232937 181 : IleTyrProThrTyrAsnGlyLeuPheAsnValGlnArgSerProIleTyrGluPheV : 200 !! ! !! !|||!.. !|||.!.:!!..!::! !||||||! !!|||.!.: ProCysThrPheTyrThrLysLeuMetAspThrArgPheSerProThrAsnGluIleM 232938 : CCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTCAGTCCGACGAACGAGATAA : 232997 201 : alTyrIleLeuHisCysMetCysGlyTyrValMetHisSerValThrAlaGlyAlaCy : 219 !!!:!:!!|||!!.|||:!:! !|||!:!:!!:!!:!!|||||||||!.!|||||||| etPheValLeuGlnCysLeuSerGlyPheIleValAsnSerValThrValGlyAlaCy 232998 : TGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTG : 233054 220 : sGlyLeuThrAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValIleAla : 238 ||||||| !|||:!!.!.|||! !|||||||||||||||:!::!!:!:|||!!::!! sGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGlnLeuAsnValValMetSer 233055 : CGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCG : 233111 239 : ArgLeuAsnAspLeuIleHisGlyLysTyrSerLysGluLysIleAsnLeuAsnAlaA : 258 !:!|||:!!||||||:!: !!!.!||| ..!:!!|||!:!:!! !.!. !! LysLeuAspAspLeuValAspAlaLysGlyGlnGluGluArgVal---AlaGlnArgL 233112 : AAATTGGACGATTTGGTGGACGCGAAAGGGCAGGAGGAGAGAGTC---GCGCAGAGGA : 233168 259 : rgPheThrLysIleIleGluHisHisLeuArgIleLeu{Ar} >>>> Target In : 271 :!!!. ! |||:!:|||||||||||||||! !|||{!!} 1315 ysLeuGlyPheIleValGluHisHisLeuArgThrLeu{Se}++ 233169 : AGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTA{AG}gt.............. : 233211 272 : tron 1 >>>> {g}PheSerAlaThrValGlnGluValLeuGlnGluLeuCysPhe : 285 bp {!}|||! ! !!.!:!!:!!.!.|||:!!.!. !:!!|||.!. ++{r}PheIleArgAsnIleGluAsnValMetAsnLeuIleCysLeu 233212 : ...........ag{T}TTTATACGGAATATAGAGAACGTTATGAACCTAATATGCCTG : 234564 286 : LeuGluCysIleGlySerThrPheLeuIleCysLeuLeuGluTyr{Ty} >>>> Ta : 301 :!!|||! :!!|||!!!|||!!. !!!:|||:!!|||||||||{!!} ValGluLeuValGlyCysThrLeuAsnMetCysMetLeuGluTyr{**}-+ 234565 : GTTGAGTTGGTAGGATGCACGTTGAACATGTGCATGCTCGAGTAT{TA}tt....... : 234616 302 : rget Intron 2 >>>> {r}CysIleThrAspTrpGluLeuAsnAsnThrIleSe : 313 180 bp { }|||||| ! !! :!! !!!.::: .. +-{*}CysIleLeuThrSerGlnGluLysSerLysGluLy 234617 : ..................aa{A}TGTATTTTAACTTCTCAGGAAAAgtcgaaggaaaa : 234828 314 : rLeuThrThrTyrIleIleLeuLeuIleSerLeuIlePheAsnIlePheIleLeuCys : 332 .|||.!!:!!|||:!!|||:!!! !:!:|||:!!! !|||||||||||||||...||| sLeuAlaSerTyrValIleValTyrValSerMetThrPheAsnIlePheIlePheCys 234829 : attagCTTCATACGTCATCGTGTACGTGTCCATGACATTtaatatattcatattttgt : 234885 333 : TyrIleGlyGluLeuLeuMetGluLys : 341 |||||||||||| !|||! |||:!! TyrIleGlyGluThrLeuThrGluGln 234886 : tACATCGGAGAGACGCTTACAGAGCAG : 234914 vulgar: AmOr59 9 341 . KQ414889.1 232417 234914 + 474 M 36 108 G 0 6 M 124 372 G 0 3 M 84 252 G 1 0 M 16 48 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 29 87 S 0 2 5 0 2 I 0 176 3 0 2 S 1 1 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232418 234914 474 + . gene_id 4 ; sequence AmOr59 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232418 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232418 233208 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234613 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234613 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234614 234615 . + . intron_id 2 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 234614 234793 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234792 234793 . + . intron_id 1 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 234794 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234794 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232418 234914 474 + . alignment_id 4 ; Query AmOr59 ; Align 232418 10 108 ; Align 232532 46 372 ; Align 232907 170 252 ; Align 233159 255 48 ; Align 234525 272 87 ; Align 234795 302 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 458 Query range: 23 -> 370 Target range: 259772 -> 262012 24 : TyrValThrLysHisAsnLysTrpIleLeuLysSerIleGlyIleTrpPro<-><->S : 41 ||| ! !:!! !|||::!|||.!!|||||| !!|||||| !|||||| | TyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerS 259773 : TATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCAT : 259830 42 : erIlePheLysAspValSerLysPheLeuProLysIleMetPheGlyLeuCysAsnPh : 60 || ! ! :!!..!|||.!!:!! !! |||:!!.!! !:!!||| !! erSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSe 259831 : CCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAG : 259887 61 : eValLeuPhePheAlaIleIleProCysIleLeuTyrIleValIleGluGluAsnAsp : 79 !..!:!!.!. !!.!!:!:|||||||||:!!|||:!!!!::!!:!!|||:!!.!...! rThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSer 259888 : TACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGT : 259944 80 : ThrMetIleArgPheLysLeuPheGlyLeuLeuSerPheCysLeuValAlaLeuIleL : 99 ! !!:!:! |||:!!.!!|||! !|||!!! !!! !!!|||!.!! !|||! LeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleA 259945 : TTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTA : 260004 100 : ysTyrTrpThrLeuLeuTyrArgLysSerArgIleLysAsnCysValGluGlnIleTr : 118 !.||| |||||||||! ||| !!! !||| !:!|||||||||!!.:!: snTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGl 260005 : ATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGA : 260061 119 : pIleAspTrpGluGlnValGluLeuTyrGluAspArgGluMetMetLeuLysTyrGly : 137 !! !||||||..! :!! ! ! ! :!!|||!:!.!.:!!||||||!:!|||!.! uAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAla 260062 : GAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCG : 260118 138 : GlnMetGlyArgAsnLeuMetIleIleCysAlaMetPheThrTyrThrGlyGlyThrI : 157 :!!.!.|||||| !!:!! ! !|||||| |||..! ! !|||! ! ! LysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuC 260119 : AAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGT : 260178 158 : lePheHisThrIleLeuGlnTyrLysValGlyThrPhe<->IleAspGluTyrAsnAr : 175 !||| ! !:!! ! !! !....!! !..!.!. :!:! .!. ! !..|| ysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrAr 260179 : GCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAG : 260235 176 : gThrIleLysProValIleTyrProThrTyrAsnGlyLeuPheAsnValGlnArgSer : 194 |! !:!! ! ! !:!! ! ! !!..!|||!!.! !|||.!.||||||.!. !||| gIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSer 260236 : GATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGT : 260292 195 : ProIleTyrGluPheValTyrIleLeuHisCysMetCysGlyTyrValMetHisSerV : 214 |||!!: !!|||.!!||| !:!!:!!!!.! !:!:! |||!:!:!!:!!:!!||| ProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerS 260293 : CCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGA : 260352 215 : alThrAlaGlyAlaCysGlyLeuThrAlaLeuPheAlaThrHisAlaCysGlyGlnIl : 233 !|||!.!||| !! !.!!|||.!!|||:!!.!..!!.!!|||||||||||||||:! erThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLe 260353 : GCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTT : 260409 234 : eAspIleValIleAlaArgLeuAsnAspLeuIleHisGlyLysTyrSerLysGluLys : 252 ::!!:!::!!!!:! ! !!:!!!..!!:!!!:!: !!! !..! !:!!:!:!!||| uAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLys 260410 : GAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAA : 260466 253 : IleAsnLeuAsnAlaArgPheThrLysIleIleGluHisHisLeuArgIleLeuArgP : 272 ! !! ! ! !..!.!! ! !|||:!!||||||||||||||| !|||! !! LysAlaProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeuThr* 260467 : AAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTCACGT : 260526 273 : heSerAlaThrValGlnGluValLeuGlnGluLeuCysPheLeuGluCysIleGlySe : 291 ..! ! !! ! !!:!!!:! !! ! !|||:!! :!!||||| **AspLeuPheAspIleThrPheValArg***ArgIlePheIleIleThrValGlySe 260527 : AAGATTTGTTTGATATTACTTTTGTACGATAAAGGATTTTTATAATTACGGTAGGATC : 260583 292 : rThrPheLeuIleCysLeu{Le} >>>> Target Intron 1 >>>> {u}Glu : 299 ||||...::: |||{:!} 1109 bp {!} rThrIleIle***LysLeu{Il}++ -+{e}Tyr 260584 : Tactataatttgaaaatta{at}gt.........................tg{a}tat : 261716 300 : TyrTyrCysIleThrAspTrpGluLeuAsnAsnThrIleSerLeuThrThrTyrIleI : 319 :::::: ::: !!:|||! !.!.:!!! ! !!:!|||:!!||||||.!!! PhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheM 261717 : ttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCA : 261776 320 : leLeuLeuIleSerLeuIlePheAsnIlePheIleLeuCysTyrIleGlyGluLeuLe : 338 !::!!||||||:!!:!! !||||||:!!||||||:!!|||||||||||||||:!!|| etMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLe 261777 : TGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACT : 261833 339 : uMetGluLys >>>> Target Intron 2 >>>> SerSerAsnIleGlyLeuS : 348 |! !|||:!! 81 bp !!!|||!!.:!!||| ! uThrGluGln++ ++CysSerLysValGlyAspV 261834 : AACGGAACAGgt.........................agTGCTCGAAAGTTGGTGACG : 261944 349 : erCysPheMetIleAspTrpTyrTyrLeuProSerLysThrIleArgGlyLeuIleLe : 367 ! !!:!|||! !:!!|||||||||||||||..!|||!:!|||! !! !|||||||| alValTyrMetThrAsnTrpTyrTyrLeuProAspLysSerIleLeuAspLeuIleLe 261945 : TTGTTTACATGACAAACTGGTATTATTTACCTGATAAAAGTATCCTTGATTTGATTTT : 262001 368 : uMetIleAla : 370 |!!:|||||| uIleIleAla 262002 : GATCATTGCA : 262012 vulgar: AmOr59 23 370 . KQ414889.1 259772 262012 + 458 M 17 51 G 0 6 M 129 387 G 0 3 M 128 384 S 0 2 5 0 2 I 0 1105 3 0 2 S 1 1 M 43 129 5 0 2 I 0 77 3 0 2 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259773 262012 458 + . gene_id 5 ; sequence AmOr59 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259773 260605 . + . KQ414889.1 exonerate:protein2genome:local exon 259773 260605 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260606 260607 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 260606 261714 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261713 261714 . + . intron_id 0 ; splice_site "tg" KQ414889.1 exonerate:protein2genome:local cds 261715 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261715 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262012 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262012 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259773 262012 458 + . alignment_id 5 ; Query AmOr59 ; Align 259773 24 51 ; Align 259830 41 387 ; Align 260220 170 384 ; Align 261716 299 129 ; Align 261926 342 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 447 Query range: 17 -> 272 Target range: 221360 -> 222131 18 : TyrLysGluAspIleAlaTyrValThrLysHisAsnLysTrpIleLeuLysSerIleG : 37 |||||| !:!!:!: !! !..!:!! !:!:::|||||||||||| !!|||| TyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleG 221361 : TACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCG : 221418 38 : lyIleTrpProSerIle<-><->PheLysAspValSerLysPheLeuProLysIleMe : 54 ||:!!||||||!:! ! .!!... |||..!!:!!:!||| ! !:!:!! lyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLeuIl 221419 : GTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCTGAT : 221475 55 : tPheGlyLeuCysAsnPheValLeuPhePheAlaIleIleProCysIleLeuTyrIle : 73 : !! !:!!||| !! !:!!:!! ||| !:!::!!||||||! !||||||:!: eAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyrVal 221476 : AAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTG : 221532 74 : ValIleGluGluAsnAspThrMetIleArgPheLysLeuPheGlyLeuLeuSerPheC : 93 :!!:!!|||! !.!.|||..! ! !|||.!!||||||!!.|||! !|||||||||| IleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheC 221533 : ATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCT : 221592 94 : ysLeuValAlaLeuIleLysTyrTrpThrLeuLeuTyrArgLysSerArgIleLysAs : 112 ||:!!:!!|||!!!:!!|||||| !|||:!! ! !:!!!:! !|||:::.! ysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGl 221593 : GCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGA : 221649 113 : nCysValGluGlnIleTrpIleAspTrpGluGlnValGluLeuTyrGluAspArgGlu : 131 .|||:!!|||!::||| ||||||:!!.!.:!! ! !! !:!!|||!:!!!: uCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLysAsp 221650 : GTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAGGAT : 221706 132 : MetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuMetIleIleCysAlaMetPheT : 151 !!:|||:!!:!! !!!.! .!.||||||...|||!!:!!:||||||.!!.!.|||! IleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheM 221707 : ATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCA : 221766 152 : hrTyrThrGlyGlyThrIlePheHisThrIleLeuGlnTyrLysValGlyThrPhe<- : 170 !|||!:!||| ......:::::: ! !:!!! !!:!!..||||||! !.!! etTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIlePr 221767 : TGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCC : 221823 171 : >IleAspGluTyrAsnArgThrIleLysProValIleTyrProThrTyrAsnGlyLeu : 188 .!.!!: ||| |||... |||:!!:!:!:!||| !! !.. !:!! oAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPheIle 221824 : TGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATC : 221880 189 : PheAsnValGlnArgSerProIleTyrGluPheValTyrIleLeuHisCysMetCysG : 208 !!:!!..!!:! !||||||:!! !!|||.!!:!!!:! |||!!. !|||...| ValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaG 221881 : GTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGG : 221940 209 : lyTyrValMetHisSerValThrAlaGlyAlaCysGlyLeuThrAlaLeuPheAlaTh : 227 || !:!!|||||||||:!!|||:!!!.!||||||.!!|||..!|||:!!||||||.. lyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaVa 221941 : GTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGT : 221997 228 : rHisAlaCysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeuIleHisGly : 246 !|||||||||||||||!!:.!.:!::!!!!:::! !!|||!!. !!||||||:!!||| lHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsnGly 221998 : GCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGC : 222054 247 : LysTyrSerLysGluLysIleAsnLeuAsnAlaArgPheThrLysIleIleGluHisH : 266 ::! ..!! ! !!. |||:!!:!! !|||.!..!!||||||:!:.!.!!.| ArgAlaAspMetCysAsn---AsnValAspArgArgIleAlaLysIleValAsnGlnH 222055 : CGGGCGGATATGTGTAAC---AACGTGGATAGGAGAATAGCGAAGATTGTGAATCAAC : 222111 267 : isLeuArgIleLeuArgPhe : 272 ||:!!|||||||||!:!!:! isValArgIleLeuGlnTyr 222112 : ACGTTCGAATATTGCAGTAT : 222131 vulgar: AmOr59 17 272 . KQ414889.1 221360 222131 + 447 M 25 75 G 0 6 M 127 381 G 0 3 M 83 249 G 1 0 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221361 222131 447 + . gene_id 6 ; sequence AmOr59 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221361 222131 . + . KQ414889.1 exonerate:protein2genome:local exon 221361 222131 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221361 222131 447 + . alignment_id 6 ; Query AmOr59 ; Align 221361 18 75 ; Align 221442 43 381 ; Align 221826 170 249 ; Align 222075 254 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 439 Query range: 0 -> 271 Target range: 217105 -> 217924 1 : MetHisProIleThrLeuAsnGluSerAspCysLysAlaArgAsnLeuLysTyrLysG : 20 |||!!. !:!!.!! !|||:!!..!.!.! ! !! !:!!! !:!:|||:::: MetGlnLysLeuAlaThrAsnLysGluGlnSerProArgThrAspTyrGluTyrGluL 217106 : ATGCAAAAACTTGCAACAAACAAGGAACAATCCCCCAGAACCGACTACGAgtacgaga : 217163 21 : luAspIleAlaTyrValThrLysHisAsnLysTrpIleLeuLysSerIleGlyIleTr : 39 :::::||| !! !:!! |||:::|||:!:|||||| !!!!:|||:!!|| ysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTr 217164 : aaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTG : 217220 40 : pProSerIlePheLysAspVal<-><->SerLysPheLeuProLysIleMetPheGly : 56 ||||!:! ! !! !..! !!|||.!!||| !|||:!:!!: !!.! pProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAla 217221 : GCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCC : 217277 57 : LeuCysAsnPheValLeuPhePheAlaIleIleProCysIleLeuTyrIleValIleG : 76 |||||| !! !:!!:!! !||| !.!!:!!|||||| !:!!|||:!: !!:!!| LeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeuG 217278 : TTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCG : 217337 77 : luGluAsnAspThrMetIleArgPheLysLeuPheGlyLeuLeuSerPheCysLeuVa : 95 ||! .!.||| ! !!:!!!.||||||||||||! !|||! !||||||:!!:! luValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValMe 217338 : AAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGAT : 217394 96 : lAlaLeuIleLysTyrTrpThrLeuLeuTyrArgLysSerArgIleLysAsnCysVal : 114 !|||!!!:!!||||||!:::!!|||:!! !!.!|||:!! !|||:::.!.|||||| tAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCysVal 217395 : GGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTG : 217451 115 : GluGlnIleTrpIleAspTrpGluGlnValGluLeuTyrGluAspArgGluMetMetL : 134 ..!::!||| ||||||..!.!.|||..!! ! ! :!!||||||||| !|||: ArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArgGluAlaMetI 217452 : AGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGA : 217511 135 : euLysTyrGlyGlnMetGlyArgAsnLeuMetIleIleCysAlaMetPheThrTyrTh : 153 !! ! !!!.!.!..!.||||||!!.|||:!::!!:!!|||.!!.!.|||! !|||!: leValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrSe 217512 : TAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAG : 217568 154 : rGlyGlyThrIlePheHisThrIleLeuGlnTyrLysValGlyThrPheIleAspGlu : 172 !||| ......:::::: ! !:!!! ! !!..||||||! !.!!:!!...||| rGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGlu 217569 : CggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAG : 217625 173 : Tyr<->AsnArgThrIleLysProValIleTyrProThrTyrAsnGlyLeuPheAsnV : 191 !! |||! !|||.!!! |||:!!:!:!:!||| ! !!. !:!!.!!:!!. AsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyrIleIleAspT 217626 : AATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATA : 217685 192 : alGlnArgSerProIleTyrGluPheValTyrIleLeuHisCysMetCysGlyTyrVa : 210 .!!:: !!!!|||! !!|||.!!|||!:!.!!|||!!.! !!:..!||| !:! hrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLe 217686 : CTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTT : 217742 211 : lMetHisSerValThrAlaGlyAlaCysGlyLeuThrAlaLeuPheAlaThrHisAla : 229 !||||||.!!:!!|||:!!!.!||||||.!!|||.!!||| !||||||..!|||||| uMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAla 217743 : GATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCC : 217799 230 : CysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeuIleHisGlyLysTyrS : 249 ||||||||||||!!::!::!!!!: ! !!|||.!. !!|||||| !!|||!:! . CysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgAlaA 217800 : TGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGAGCGG : 217859 250 : erLysGluLysIleAsnLeuAsnAlaArgPheThrLysIleIleGluHisHisLeuAr : 268 .!! !... ! !.!:!!:!!!.!|||.!!.!!!..|||:!!...!!.|||:!!|| spMetSerAsp---ThrValAspGlyArgIleAlaSerIleValSerGlnHisValAr 217860 : ATATGAGCGAT---ACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCG : 217913 269 : gIleLeuArg : 271 |||||||!:! gIleLeuLys 217914 : GATATTAAAG : 217924 vulgar: AmOr59 0 271 . KQ414889.1 217105 217924 + 439 M 46 138 G 0 6 M 127 381 G 0 3 M 79 237 G 1 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217106 217924 439 + . gene_id 7 ; sequence AmOr59 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217106 217924 . + . KQ414889.1 exonerate:protein2genome:local exon 217106 217924 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217106 217924 439 + . alignment_id 7 ; Query AmOr59 ; Align 217106 1 138 ; Align 217250 47 381 ; Align 217634 174 237 ; Align 217871 254 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 418 Query range: 23 -> 304 Target range: 266637 -> 267558 24 : TyrValThrLysHisAsnLysTrpIleLeuLysSerIleGlyIleTrpPro<-><->S : 41 ||| ! !:!! |||::!|||.!!|||||| !!|||||| !|||||| | TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuS 266638 : TACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGT : 266695 42 : erIlePheLysAspValSerLysPheLeuProLysIleMetPheGlyLeuCysAsnPh : 60 ||:!! ... ! :!!..!::!.!!:!! !! ! !:!!.!!! !:!!||| !!! erLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCy 266696 : CACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTG : 266752 61 : eValLeuPhePheAlaIleIleProCysIleLeuTyrIleValIleGluGluAsnAsp : 79 ! !:!!.!.|||.!!:!!|||||||||:!:!!!:!!:!!|||:!:|||!!:.!...! sSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSer 266753 : CTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGT : 266809 80 : ThrMetIleArgPheLysLeuPheGlyLeuLeuSerPheCysLeuValAlaLeuIleL : 99 ! ! ! !:! ! |||:!!||||||! !|||||| !!! !!!|||!.! !|||! IleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleA 266810 : ATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTA : 266869 100 : ysTyrTrpThrLeuLeuTyrArgLysSerArgIleLysAsnCysValGluGlnIleTr : 118 !.||| ||||||||| |||!..!.!..!|||:::..!|||||||||!!.!!: snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 266870 : ACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCA : 266926 119 : pIleAspTrpGluGlnValGluLeuTyrGluAspArgGluMetMetLeuLysTyrGly : 137 ! !||||||..! ||| ! ||||||!:!:!!:!!||||||||| !!!.! nThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAla 266927 : AACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCG : 266983 138 : GlnMetGlyArgAsnLeuMetIleIleCysAlaMetPheThrTyrThrGlyGlyThrI : 157 ::!!!:|||||| !!:!! |||.!!|||||| !|||! ! ! !|||! ! ! ArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuG 266984 : AGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCG : 267043 158 : lePheHisThrIleLeuGlnTyrLysValGlyThrPhe<->IleAspGluTyrAsnAr : 175 !!:! !..!||| ! !!:!! :!! !||| ! :!!! !.!. ! !.!|| lyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrAr 267044 : GCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAG : 267100 176 : gThrIleLysProValIleTyrProThrTyrAsnGlyLeuPheAsnValGlnArgSer : 194 |! !:!! ! ! !:!! !! ! !!..!|||!!. !:!!.!! |||.!.! !||| gIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSer 267101 : GATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGC : 267157 195 : ProIleTyrGluPheValTyrIleLeuHisCysMetCysGlyTyrValMetHisSerV : 214 |||! !!|||.!!||| !:!!! !!!.! !:!:! |||!:!:!!:!!:!!||| ProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerS 267158 : CCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGA : 267217 215 : alThrAlaGlyAlaCysGlyLeuThrAlaLeuPheAlaThrHisAlaCysGlyGlnIl : 233 !..!!.!||||||! !.!!|||.!!|||:!!||||||.!!|||||||||||||||:! erValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLe 267218 : GCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCT : 267274 234 : eAspIleValIleAlaArgLeuAsnAspLeuIleHisGlyLysTyrSerLysGluLys : 252 :..!:!::!!!!: ! !!:!!!!.!!:!!!:!::!! !!... ..!!...!.||| uSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLys 267275 : GAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAG : 267331 253 : IleAsnLeuAsnAlaArgPheThrLysIleIleGluHisHisLeuArgIleLeu{Ar} : 271 ! ! !! ! !! !!:!.!! ! !:!!:!!|||||||||||||||:!!|||{!!} AsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se} 267332 : AACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG} : 267388 272 : >>>> Target Intron 1 >>>> {g}PheSerAlaThrValGlnGluValLe : 280 69 bp {!}|||! !||| !:!!:!!...|||:! ++ ++{r}PheIleAlaArgIleGluSerValMe 267389 : gt.........................ag{C}TTCATAGCACGTATCGAAAGTGTAAT : 267484 281 : uGlnGluLeuCysPheLeuGluCysIleGlySerThrPheLeuIleCysLeuLeuGlu : 299 !...|||:!!||||||:!!|||! .!! !!!!|||.!. !||||||:!!|||... tSerGluIleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSer 267485 : GAGCGAAATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGC : 267541 300 : TyrTyrCysIleThr : 304 |||||| !:!!||| TyrTyrIleLeuThr 267542 : TATTATATCCTTACG : 267558 vulgar: AmOr59 23 304 . KQ414889.1 266637 267558 + 418 M 17 51 G 0 6 M 129 387 G 0 3 M 101 303 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266638 267558 418 + . gene_id 8 ; sequence AmOr59 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266638 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266638 267389 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267558 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267558 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266638 267558 418 + . alignment_id 8 ; Query AmOr59 ; Align 266638 24 51 ; Align 266695 41 387 ; Align 267085 170 303 ; Align 267460 272 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 396 Query range: 14 -> 271 Target range: 208185 -> 208962 15 : AsnLeuLysTyrLysGluAspIleAlaTyrValThrLysHisAsnLysTrpIleLeuL : 34 ||| !!!.||||||.!.|||:!:::!!:! !..!:::! ||| !|||! |||| AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 35 : ysSerIleGlyIleTrpPro<->SerIlePheLysAspValSerLysPheLeuProLy : 52 ||! !|||||| !|||||| |||||| !:::..! !! !:!! ! !! ! ! ysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHi 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCA : 208300 53 : sIleMetPheGly<->LeuCysAsnPheValLeuPhePheAlaIleIleProCysIle : 70 |||:!:!!...! ||| !!:!!! !:!!||| !||| !:!:|||||| ! ! sIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGly 208301 : TATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGC : 208357 71 : LeuTyrIleValIleGluGluAsnAspThrMetIleArgPheLysLeuPheGlyLeuL : 90 :!!!:! :!!:!!! !! .!.||| ! !!:!!!.|||:!!! !.!! !| MetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaL 208358 : ATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTC : 208417 91 : euSerPheCysLeuValAlaLeuIleLysTyrTrpThrLeuLeuTyrArgLysSerAr : 109 ||||||||! !:!!:!!|||!!!! |||||| !! !:!! ! !|||:!!.!! euSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAs 208418 : TGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGA : 208474 110 : gIleLysAsnCysValGluGlnIleTrpIleAspTrpGluGlnValGluLeuTyrGlu : 128 !|||::!!!.||||||||| ! :!! ! !||||||..!.!.||||||! ! ! ||| pIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGlu 208475 : CATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAG : 208531 129 : AspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuMetIleIleCysA : 148 ||||||:!!!!:|||||| ! !!!.!....!.!.!|||!!.|||!!::!:||||||! AspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysG 208532 : GACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCG : 208591 149 : laMetPheThrTyrThrGlyGlyThrIlePheHisThrIleLeuGlnTyrLysValGl : 167 .! |||! !||| !||| ...:::::: ! !|||! ! !! !! lyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAs 208592 : GAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGA : 208648 168 : yThrPheIleAspGlu<->TyrAsnArgThrIleLysProValIleTyrProThrTyr : 185 !! ! !!:!!!!:||| !||| !||| !!:! !:!!:!!||||||..! ! pLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValPro 208649 : CAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCT : 208705 186 : AsnGlyLeuPheAsnValGlnArgSerProIleTyrGluPheValTyrIleLeuHisC : 205 !!. !:!!.!.:!!|||!:! !||||||:!: !!|||.!! !!|||! :!!!!.! LysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnL 208706 : AAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAAT : 208765 206 : ysMetCysGlyTyrValMetHisSerValThrAlaGlyAlaCysGlyLeuThrAlaLe : 224 :!!! |||!:!||| |||!:!:!!|||!.!|||||||||||||||.!!||||| euLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLe 208766 : TGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCT : 208822 225 : uPheAlaThrHisAlaCysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeu : 243 |.!!|||! !|||||||||||||||:!:.!.|||:!!!!::!! !!:!!.!. ! ||| uLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeu 208823 : GCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTG : 208879 244 : IleHisGlyLysTyrSerLysGluLysIleAsnLeuAsnAlaArgPheThrLysIleI : 263 :!! !!|||::! ! ..!:!!|||||| ||||||:!! !|||!!..!!!!.|||: ValAspGlyArgGluAspGluGluLys---AsnLeuAspGlnArgLeuAlaAsnIleV 208880 : GTCGATGGACGGGAGGACGAGGAGAAG---AATTTGGATCAGAGGTTGGCTAATATCG : 208936 264 : leGluHisHisLeuArgIleLeuArg : 271 !:|||!!.|||:!!|||:!::!!!:! alGluGlnHisValArgValIleLys 208937 : TGGAGCAGCATGTTCGAGTGATCAAG : 208962 vulgar: AmOr59 14 271 . KQ414889.1 208185 208962 + 396 M 26 78 G 0 3 M 16 48 G 0 3 M 116 348 G 0 3 M 80 240 G 1 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 208962 396 + . gene_id 9 ; sequence AmOr59 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208186 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208962 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208186 208962 396 + . alignment_id 9 ; Query AmOr59 ; Align 208186 15 78 ; Align 208267 41 48 ; Align 208318 57 348 ; Align 208669 173 240 ; Align 208909 254 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 394 Query range: 6 -> 272 Target range: 212821 -> 213625 7 : AsnGluSerAspCysLysAlaArgAsnLeuLysTyrLysGluAspIleAlaTyrValT : 26 !!.!!:..! ! ! :!!!.!..!:!!! !! |||:!!:!! ::: LysAspGluLysLeuGlnValGluAspCysThrTyrGluLysArgValAsnLeuSerI 212822 : AAAGATGAGAAATTGCAGGTCGAAGACTGTACCTACGAGAAACGtgtaaatttaagta : 212879 27 : hrLysHisAsnLysTrpIleLeuLysSerIleGlyIleTrpPro<-><->SerIlePh : 43 ! |||:::|||:!!|||||| !!! |||:!:|||||| ||| ! ! leProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspLysSerTyrVa 212880 : tacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCTACGT : 212936 44 : eLysAspValSerLysPheLeuProLysIleMetPheGlyLeuCysAsnPheValLeu : 62 !..! :!!..!||| !:!! !!::!:!::!: ! !:!!||| !! !:!!:!! lSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLeuIle 212937 : TTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATC : 212993 63 : PhePheAlaIleIleProCysIleLeuTyrIleValIleGluGluAsnAspThrMetI : 82 !!:! !:!!|||||||||! !||||||:!: !!:!!!!:! !...::: ... GlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGluAsnIlePheL 212994 : GGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatatattta : 213053 83 : leArgPheLysLeuPheGlyLeuLeuSerPheCysLeuValAlaLeuIleLysTyrTr : 101 ....!!:!!|||||||||:!!!!!:!!||||||:!!!.!|||||| |||||| ysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHi 213054 : aagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCA : 213110 102 : pThrLeuLeuTyrArgLysSerArgIleLysAsnCysValGluGlnIleTrpIleAsp : 120 :!!|||:!! !!.! ..! !|||:::!..|||||||||!!.!!: !||| sSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMetLysTyrAsp 213111 : TTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATATGAC : 213167 121 : TrpGluGlnValGluLeuTyrGluAspArgGluMetMetLeuLysTyrGlyGlnMetG : 140 |||:!!.!.:!! !! ! ! ||||||!:!|||!!:||| ! ! !!!.!....!.| TrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSerPheG 213168 : TGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTG : 213227 141 : lyArgAsnLeuMetIleIleCysAlaMetPheThrTyrThrGlyGlyThrIlePheHi : 159 ||!:!!..:!!:!!! !|||||||||.!.|||! !||||||||| !|||.!!!:! lyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheThrPheTyrPh 213228 : GAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTT : 213284 160 : sThrIleLeuGlnTyrLysValGlyThrPheIle<->AspGluTyrAsnArgThrIle : 177 ! !:!!:!!! ! !!..!.!! !! !.!.:!! !!:!!: !||| !|||.!! eLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAsnValThrPhe 213285 : CCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTC : 213341 178 : LysProValIleTyrProThrTyrAsnGlyLeuPheAsnValGlnArgSerProIleT : 197 !:!! !:!!:!: !|||..!! !.. !:!! !!:!!|||!:! !||||||:!: ArgGlnMetValValProValSerArgPheIleValAspValArgTyrSerProValA 213342 : AGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGA : 213401 198 : yrGluPheValTyrIleLeuHisCysMetCysGlyTyrValMetHisSerValThrAl : 216 !!|||.!. !!!:!:!::!!!!. !!!:..!||| :!!!!:|||:!!:!!.!!!. snGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaVa 213402 : ACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGT : 213458 217 : aGlyAlaCysGlyLeuThrAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIle : 235 !! !||||||.!!|||.!!|||:!!||||||..!|||||||||||||||!!:! !||| lValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIle 213459 : GGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATT : 213515 236 : ValIleAlaArgLeuAsnAspLeuIleHisGlyLysTyrSerLysGluLysIleAsnL : 255 :!!!!:::! !!|||.!. !!|||||| !!|||!:! ! ..!! !...||| |||: LeuMetSerTrpLeuGluHisLeuIleAspGlyArgGluAspMetSerLys---AsnV 213516 : TTGATGAGCTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGCAAG---AATG : 213572 256 : euAsnAlaArgPheThrLysIleIleGluHisHisLeuArgIleLeuArgPhe : 272 !!:!!! !|||.!!.!! |||:!:.!.!!.|||:!!|||||||||!:!!:: alAspAspArgIleAlaValIleValAsnGlnHisValArgIleLeuLysTrp 213573 : TGGACGACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTGAAGTGG : 213625 vulgar: AmOr59 6 272 . KQ414889.1 212821 213625 + 394 M 34 102 G 0 6 M 130 390 G 0 3 M 82 246 G 1 0 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212822 213625 394 + . gene_id 10 ; sequence AmOr59 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212822 213625 . + . KQ414889.1 exonerate:protein2genome:local exon 212822 213625 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212822 213625 394 + . alignment_id 10 ; Query AmOr59 ; Align 212822 7 102 ; Align 212930 41 390 ; Align 213323 171 246 ; Align 213569 254 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 383 Query range: 17 -> 270 Target range: 284505 -> 285285 18 : TyrLysGluAspIleAlaTyrValThrLysHisAsnLysTrpIleLeuLysSerIleG : 37 !:: ! !||| !||| !..!:!! |||:::|||.!!|||||| !!|||| TrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleG 284506 : TGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTG : 284563 38 : lyIleTrpPro<->SerIlePheLysAspValSerLysPheLeuProLysIleMetPh : 55 ||:!!|||||| |||:!!! ! ! !..!! !:!! :!! !...:!::!:.! lyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLe 284564 : GCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCT : 284620 56 : eGlyLeuCysAsn<->PheValLeuPhePheAlaIleIleProCysIleLeuTyrIle : 73 !!.!||| !!:! |||:!!:!! !||| !:!::!!|||||| !|||! !! ! uAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThr 284621 : CGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACA : 284677 74 : ValIleGluGlu<->AsnAspThrMetIleArgPheLysLeuPheGlyLeuLeuSerP : 92 |||:!!!!::!! ..!||| ! ! !:!.!!|||:!!.!!|||! !||||||| ValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerP 284678 : GTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTT : 284737 93 : heCysLeuValAlaLeuIleLysTyrTrpThrLeuLeuTyrArgLysSerArgIleLy : 111 |||||:!!:!!||| !|||||||||!::! !|||:!!! ||| .!!!:!||| heCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGl 284738 : TCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGG : 284794 112 : sAsnCysValGluGlnIleTrpIleAspTrpGluGlnValGluLeuTyr<-><-><-> : 128 .!.||||||:!!.!.||| ! ||||||...! ..! ! !:!! yGlnCysValLysAspIleArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGlu 284795 : CCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaa : 284851 129 : GluAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuMetIleIleC : 147 |||:::||||||:::||| ! ! !!.!::!!!:||||||::!||| !|||.!!| GluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheC 284852 : gaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCT : 284911 148 : ysAlaMetPheThrTyrThrGlyGlyThrIlePheHisThrIleLeuGlnTyrLysVa : 166 ||||| |||! !|||:!!|||||| !.!!!:! !|||:!::!!! !! .. ysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysTh 284912 : GCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCAC : 284968 167 : lGlyThrPheIleAspGluTyrAsnArgThrIleLysProValIleTyrProThrTyr : 185 !! ! ! ! !!|||..!|||:!:!:! !! ! !:!|||! !||| rValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyr 284969 : AGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTAT : 285025 186 : AsnGlyLeuPheAsnValGlnArgSerProIleTyrGluPheValTyrIleLeuHisC : 205 ..!||||||.!!:!! !!::! !|||||| !:!|||.!!||| ! .!!:!!!!.| ArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnC 285026 : CGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAAT : 285085 206 : ysMetCysGlyTyrValMetHisSerValThrAlaGlyAlaCysGlyLeuThrAlaLe : 224 ||:!!..!!.!!:!|||!!::!!|||||||||!.!|||||||||.!!|||.!!|||:! ysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaVa 285086 : GCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGT : 285142 225 : uPheAlaThrHisAlaCysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeu : 243 !|||!.!! !|||!.!|||||||||.!! |||:!!:!:.!!!:!|||:!! ! ||| lPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeu 285143 : GTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTC : 285199 244 : IleHisGlyLysTyrSerLysGluLysIleAsnLeuAsn<->AlaArgPheThrLysI : 262 :!! !!||| ! ! .!!!:!:!! !:!:!:! !:!! !|||.!. ! ! | ValAspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspI 285200 : GTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATA : 285259 263 : leIleGluHisHisLeuArgIleLeu : 270 |||||||||||||||||!:!|||||| leIleGluHisHisLeuLysIleLeu 285260 : TCATCGAGCATCATCTGAAGATACTG : 285285 vulgar: AmOr59 17 270 . KQ414889.1 284505 285285 + 383 M 23 69 G 0 3 M 19 57 G 0 3 M 18 54 G 0 3 M 50 150 G 0 9 M 129 387 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284506 285285 383 + . gene_id 11 ; sequence AmOr59 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284506 285285 . + . KQ414889.1 exonerate:protein2genome:local exon 284506 285285 . + . insertions 21 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284506 285285 383 + . alignment_id 11 ; Query AmOr59 ; Align 284506 18 69 ; Align 284578 41 57 ; Align 284638 60 54 ; Align 284695 78 150 ; Align 284854 128 387 ; Align 285244 257 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 375 Query range: 17 -> 270 Target range: 278558 -> 279338 18 : TyrLysGluAspIleAlaTyrValThrLysHisAsnLysTrpIleLeuLysSerIleG : 37 !::!!. !||| !||| !..!:!! |||:::|||.!!|||||| !!|||| TrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleG 278559 : TGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTG : 278616 38 : lyIleTrpPro<->SerIlePheLysAspValSerLysPheLeuProLysIleMetPh : 55 ||:!!|||||| |||:!!! ! ! !..!! !:!! :!! !...:!::!:.! lyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLe 278617 : GCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCT : 278673 56 : eGlyLeuCysAsn<->PheValLeuPhePheAlaIleIleProCysIleLeuTyrIle : 73 !!.!||| !!:! |||:!!:!! !||| !:!::!!|||||| !|||! !! ! uAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThr 278674 : CGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACA : 278730 74 : ValIleGluGlu<->AsnAspThrMetIleArgPheLysLeuPheGlyLeuLeuSerP : 92 |||:!!!!::!! ..!||| ! ! !:!.!!|||:!!.!!|||! !||||||| ValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerP 278731 : GTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTT : 278790 93 : heCysLeuValAlaLeuIleLysTyrTrpThrLeuLeuTyrArgLysSerArgIleLy : 111 ||||| !:!!||| !|||||||||!::! !|||:!!! ||| .!!!:!||| heCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGl 278791 : TCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGG : 278847 112 : sAsnCysValGluGlnIleTrpIleAspTrpGluGlnValGluLeuTyr<-><-><-> : 128 !!.||||||.!..!.||| ! ! ||||||...! ..! ! !||| yLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGlu 278848 : CAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaa : 278904 129 : GluAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuMetIleIleC : 147 |||:::||||||:::||| ! ! !!.!::!!!:||||||::!||| !|||.!! GluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheS 278905 : gaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCA : 278964 148 : ysAlaMetPheThrTyrThrGlyGlyThrIlePheHisThrIleLeuGlnTyrLysVa : 166 !!||| |||! !|||:!!||||||..!.!!!:! !.!!:!::!!! !! !. erAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAl 278965 : GCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGC : 279021 167 : lGlyThrPheIleAspGluTyrAsnArgThrIleLysProValIleTyrProThrTyr : 185 !! ! ! ! !!|||..!|||:!:!:! !! ! !:!|||! !||| aValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyr 279022 : AGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTAT : 279078 186 : AsnGlyLeuPheAsnValGlnArgSerProIleTyrGluPheValTyrIleLeuHisC : 205 ..!||||||.!!:!! !!::! !|||||| !:!|||.!!||| ! .!!:!!!!.| ArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnC 279079 : CGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAAT : 279138 206 : ysMetCysGlyTyrValMetHisSerValThrAlaGlyAlaCysGlyLeuThrAlaLe : 224 ||:!!..!!.!!:!|||:!::!!|||||||||!.!|||||||||.!!|||! !|||:! ysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaVa 279139 : GCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGT : 279195 225 : uPheAlaThrHisAlaCysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeu : 243 !|||!.!! !|||!.!|||||||||.!! |||:!!:!:.!!!:!|||:!! ! ||| lPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeu 279196 : GTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTC : 279252 244 : IleHisGlyLysTyrSerLysGluLysIleAsnLeuAsn<->AlaArgPheThrLysI : 262 ||| !!||| ! ! .!!!:!:!!!..:!:!:! !:!! !|||.!. ! ! | IleAspGlyValLysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspI 279253 : ATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATA : 279312 263 : leIleGluHisHisLeuArgIleLeu : 270 |||||||||||||||||!:!|||||| leIleGluHisHisLeuLysIleLeu 279313 : TCATCGAGCATCATCTGAAGATACTG : 279338 vulgar: AmOr59 17 270 . KQ414889.1 278558 279338 + 375 M 23 69 G 0 3 M 19 57 G 0 3 M 18 54 G 0 3 M 50 150 G 0 9 M 129 387 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278559 279338 375 + . gene_id 12 ; sequence AmOr59 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278559 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278559 279338 . + . insertions 21 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278559 279338 375 + . alignment_id 12 ; Query AmOr59 ; Align 278559 18 69 ; Align 278631 41 57 ; Align 278691 60 54 ; Align 278748 78 150 ; Align 278907 128 387 ; Align 279297 257 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 322 Query range: 23 -> 271 Target range: 274383 -> 275136 24 : TyrValThrLysHisAsnLysTrpIleLeuLysSerIleGlyIleTrpPro<-><->S : 41 ||| ! !:!! |||::!|||.!!|||||| !!|||||| |||||| | TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaS 274384 : TACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCT : 274441 42 : erIlePheLysAspValSerLysPheLeuProLysIleMetPheGlyLeuCysAsnPh : 60 || ! !! ! ! !!..!::!.!!||| !! ! ::::::... |||||| !!! erProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCy 274442 : CGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTG : 274498 61 : eValLeuPhePheAlaIleIleProCysIleLeuTyrIleValIleGluGluAsnAsp : 79 ! !!:!!.!!! !.!!:!!|||||| !!|||!!!:!!|||:!!:!!! !!!:.!...! sPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGluSer 274499 : CTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGT : 274555 80 : ThrMetIleArgPheLysLeuPheGlyLeuLeuSerPheCysLeuValAlaLeuIleL : 99 ! :!:!:!.!.||||||.!!|||! !|||.!! !!! !!!:!!!.! !|||! LeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleA 274556 : CTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTA : 274615 100 : ysTyrTrpThrLeuLeuTyrArgLysSerArgIleLysAsnCysValGluGlnIleTr : 118 !.||| ||||||||| |||!..!.!..!|||:::..!|||||||||!!.!!: snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 274616 : ATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCA : 274672 119 : pIleAspTrpGluGlnValGluLeuTyrGluAspArgGluMetMetLeuLysTyrGly : 137 ! !||||||..! ||| ! ||||||!:!:!!:!!||||||||| !!!.! nThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsnAla 274673 : AACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCG : 274729 138 : GlnMetGlyArgAsnLeuMetIleIleCysAlaMetPheThrTyrThrGlyGlyThrI : 157 :!!!!:|||||| !!:!! !|||.!!|||||| !|||! ! ! !|||! ! ! LysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuC 274730 : AAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCT : 274789 158 : lePheHisThrIleLeuGlnTyrLysValGlyThrPhe<->IleAspGluTyrAsnAr : 175 !!:! !..!||| ! !!:!! :!! !||| !! :!!! .!. ! !.!|| ysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrAr 274790 : GTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAG : 274846 176 : gThrIleLysProValIleTyrProThrTyrAsnGlyLeuPheAsnValGlnArgSer : 194 ||||:!: ! !:!! ! ! !.!!|||!!. !:!! !! |||.!.! !||| gThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThrSer 274847 : AACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGT : 274903 195 : ProIleTyrGluPheValTyrIleLeuHisCysMetCysGlyTyrValMetHisSerV : 214 |||! !!|||.!!||| ! !! !!!.! !:!!! |||!:!:!!:!!:!!||| ProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerS 274904 : CCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGA : 274963 215 : alThrAlaGlyAlaCysGlyLeuThrAlaLeuPheAlaThrHisAlaCysGlyGlnIl : 233 !.!!!.!||||||! !.!!|||.!!|||:!!||||||.!!||||||! !||||||:! erAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLe 274964 : GCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTT : 275020 234 : eAspIleValIleAlaArgLeuAsnAspLeuIleHisGlyLysTyrSerLysGluLys : 252 :..!:!::!!!!: ! !!:!!!.!!!:!!!:!::!! !... ...:::...||| uSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsnLys 275021 : GAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaa : 275077 253 : IleAsnLeuAsnAlaArgPheThrLysIleIleGluHisHisLeuArgIleLeuArg : 271 ::!..!.!! ! !:!!:!!|||||||||||||||:!!|||||| AsnValTyrPheSerGluIleGlyValValValGluHisHisLeuArgValLeuArg 275078 : aatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTCAGG : 275136 vulgar: AmOr59 23 271 . KQ414889.1 274383 275136 + 322 M 17 51 G 0 6 M 129 387 G 0 3 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274384 275136 322 + . gene_id 13 ; sequence AmOr59 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274384 275136 . + . KQ414889.1 exonerate:protein2genome:local exon 274384 275136 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274384 275136 322 + . alignment_id 13 ; Query AmOr59 ; Align 274384 24 51 ; Align 274441 41 387 ; Align 274831 170 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 303 Query range: 3 -> 271 Target range: 236792 -> 237599 4 : IleThrLeuAsnGluSerAspCysLysAlaArgAsnLeuLysTyrLysGluAspIleA : 23 :!!|||:!!!:!.!...! ! ! !!.!! !.!.:!!!!. ! ! ..!! !! ValThrMetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerA 236793 : GTCACGATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCG : 236850 24 : laTyrValThrLysHisAsnLysTrpIleLeuLysSerIleGlyIleTrpProSerIl : 42 !||| ! !:!! |||::!||| :!!||||||||||||! !||||||..!.! spTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPh 236851 : ATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTT : 236907 43 : ePheLysAspValSerLysPheLeuProLysIleMetPheGlyLeuCysAsnPheVal : 61 !! ..!:!!:!!..!!:! !:!! !!::!|||:!: !! !:!!||| !! !!.! eSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAla 236908 : CTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCA : 236964 62 : LeuPhePheAlaIleIleProCysIleLeuTyrIleValIleGluGluAsnAspThrM : 81 :!!.!.|||:!!|||||||||||| |||:!!:!!:!!:!:|||:!!... ! ! IleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheT 236965 : ATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCT : 237024 82 : etIleArgPheLysLeuPheGlyLeuLeuSerPheCysLeuValAlaLeuIleLysTy : 100 ! !:! ! |||:!!.!!|||! !|||||| !!! :!! !!..!:!!|||!..|| yrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTy 237025 : ACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTA : 237081 101 : rTrpThrLeuLeuTyrArgLysSerArgIleLysAsnCysValGluGlnIleTrpIle : 119 | ! !|||||| |||:::!.!! !|||::::!!! ! !!.!.!!.!!: !! ! rThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThr 237082 : CACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACC : 237138 120 : AspTrpGluGlnValGluLeuTyrGluAspArgGluMetMetLeuLysTyrGlyGlnM : 139 ||||||..! !..! ||| :::|||:::||||||||||||!.!:!!. AspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysP 237139 : GATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAAT : 237198 140 : etGlyArgAsnLeuMetIleIleCysAlaMetPheThrTyrThrGlyGlyThrIlePh : 158 !..!!||| !! ! !||| !|||.!!!!:|||! !:!! !||| ! ! !!: heSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTy 237199 : TTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATA : 237255 159 : eHisThrIleLeuGlnTyrLysValGlyThrPheIleAspGluTyrAsnArgThrIle : 177 ! !..!!!: ! !! !! ..! !..! !!:!:! !! ! !!!!.! !|||||| rCysValMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIle 237256 : TTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATC : 237312 178 : LysProValIle<->TyrProThrTyrAsnGlyLeuPheAsnValGlnArgSerProI : 196 !! !|||:!: ! |||! !|||!!.||||||.!! |||.!.! !!:! !!! LeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrM 237313 : TTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTA : 237372 197 : leTyrGluPheValTyrIleLeuHisCysMetCysGlyTyrValMetHisSerValTh : 215 !: !!!!:.!!||| !:!:! !!!.! !:!:! !|||!:!:!! !:!!!:! !.! etAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAl 237373 : TGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGC : 237429 216 : rAlaGlyAlaCysGlyLeuThrAlaLeuPheAlaThrHisAlaCysGlyGlnIleAsp : 234 ! !.!!!.! .!!||||||::! !.!..!!:!!||||||! !||||||:!:..! aIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSer 237430 : GATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGC : 237486 235 : IleValIleAlaArgLeuAsnAspLeuIleHisGlyLysTyrSerLysGluLysIleA : 254 :!:|||!!: ! !:!!.!.|||!!!:!: !! ! ! !!!:!! !||| !: ValValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspA 237487 : GTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACG : 237546 255 : snLeuAsnAlaArgPheThrLysIleIleGluHisHisLeuArgIleLeuArg : 271 !!! ! !! !..!.!. !!! !|||:!:|||.!.|||||||||:!:|||!:! spHisPheAspGluIleProThrIleValGluGluHisLeuArgValLeuLys 237547 : ATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAG : 237599 vulgar: AmOr59 3 271 . KQ414889.1 236792 237599 + 303 M 178 534 G 0 3 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236793 237599 303 + . gene_id 14 ; sequence AmOr59 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236793 237599 . + . KQ414889.1 exonerate:protein2genome:local exon 236793 237599 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 236793 237599 303 + . alignment_id 14 ; Query AmOr59 ; Align 236793 4 534 ; Align 237330 182 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 303 Query range: 23 -> 271 Target range: 262849 -> 263602 24 : TyrValThrLysHisAsnLysTrpIleLeuLysSerIleGlyIleTrpPro<-><->S : 41 ||| ! !:!! |||::!|||:!:|||||| !!|||||| !|||||| : TyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerA 262850 : TACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCG : 262907 42 : erIlePheLysAspValSerLysPheLeuProLysIleMetPheGlyLeuCysAsnPh : 60 !! .!!..! :!!..!::!.!!:!! ! :!!:!:.!!! !:!!||| !!! laSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCy 262908 : CCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTG : 262964 61 : eValLeuPhePheAlaIleIleProCysIleLeuTyrIleValIleGluGluAsnAsp : 79 !:!!:!!.!.! !.!!:!!||||||! !||||||:!!||||||:!!|||! .!.:!! sLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsn 262965 : TCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAAT : 263021 80 : ThrMetIleArgPheLysLeuPheGlyLeuLeuSerPheCysLeuValAlaLeuIleL : 99 ! !!:!:!.!.:!!:!!.!!|||! !|||.!! !! !!!|||!.!:!!|||! PheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleA 263022 : TTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCA : 263081 100 : ysTyrTrpThrLeuLeuTyrArgLysSerArgIleLysAsnCysValGluGlnIleTr : 118 !.||| !|||||| !!.!!..!.! !|||:!!..!||||||:!!!!.:!: snTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGl 263082 : ATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCA : 263138 119 : pIleAspTrpGluGlnValGluLeuTyrGluAspArgGluMetMetLeuLysTyrGly : 137 ! !|||||| ||| !! ||||||!:!...!!:||||||||| !!!.! nGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAla 263139 : GGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCG : 263195 138 : GlnMetGlyArgAsnLeuMetIleIleCysAlaMetPheThrTyrThrGlyGlyThrI : 157 :!! |||||| !!:!! ! !||||||!!:|||! ! ! |||.!! !! ! LysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetC 263196 : AAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGT : 263255 158 : lePheHisThrIleLeuGlnTyrLysValGlyThrPheIleAsp<->GluTyrAsnAr : 175 ! ! !:!! ! !!:!! ..! !..!.!! ||| .!. ! !.!|| ysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrAr 263256 : GCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAG : 263312 176 : gThrIleLysProValIleTyrProThrTyrAsnGlyLeuPheAsnValGlnArgSer : 194 |! !:!!::: !:!! ! !|||..!|||!!.! !:!!.!! |||.!.! !!:! gIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThrAsn 263313 : AATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAAT : 263369 195 : ProIleTyrGluPheValTyrIleLeuHisCysMetCysGlyTyrValMetHisSerV : 214 |||! !!|||.!! !! ! ! !!!.! !:!!! |||!:!:!!:!: !:!!. ProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaT 263370 : CCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGA : 263429 215 : alThrAlaGlyAlaCysGlyLeuThrAlaLeuPheAlaThrHisAlaCysGlyGlnIl : 233 .!|||!.!||||||! !|||:!!||||||:!!|||||| !|||||||||||||||:! hrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLe 263430 : CAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTT : 263486 234 : eAspIleValIleAlaArgLeuAsnAspLeuIleHisGlyLysTyrSerLysGluLys : 252 ::!!:!::!!!!::!! !!:!!!..!!:!!!:!::!! !... ..!:!!.!.||| uAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLys 263487 : GAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAG : 263543 253 : IleAsnLeuAsnAlaArgPheThrLysIleIleGluHisHisLeuArgIleLeuArg : 271 ! ! !! ! !.!!..!.!. ! !|||:!!|||||||||||||||:!!|||||| AsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeuArg 263544 : AATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTGAGG : 263602 vulgar: AmOr59 23 271 . KQ414889.1 262849 263602 + 303 M 17 51 G 0 6 M 131 393 G 0 3 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262850 263602 303 + . gene_id 15 ; sequence AmOr59 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262850 263602 . + . KQ414889.1 exonerate:protein2genome:local exon 262850 263602 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262850 263602 303 + . alignment_id 15 ; Query AmOr59 ; Align 262850 24 51 ; Align 262907 41 393 ; Align 263303 172 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 300 Query range: 280 -> 407 Target range: 280019 -> 280545 281 : GlnGluLeuCysPheLeuGluCysIleGlySerThrPheLeuIleCysLeuLeuGluT : 300 .!.!!:||||||!:!!!!.!. !:!! !:!!! !.!! !.!! !:!!! !..!! AspAspLeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerL 280020 : GACGACTTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGT : 280077 301 : yrTyrCysIleThrAspTrpGluLeuAsnAsnThrIleSerLeuThrThrTyrIleIl : 319 ! !.!! !!!:||||||! !|||:!!.!!|||.!! ! !||||||:!!!! euSerValPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMe 280078 : TGTCAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAAT : 280134 320 : eLeuLeuIleSerLeuIlePheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeu : 338 :!!!||||||||||||! ||||||:!!||||||||||||||||||||||||:!!||| tPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeu 280135 : GTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTC : 280191 339 : MetGluLys >>>> Target Intron 1 >>>> SerSerAsnIleGlyLeuSe : 348 |||::: 74 bp !!!! !!!.:!!|||:!!|| SerGluGln++ ++CysLeuLysValGlyValSe 280192 : TCCGAACaggt.........................agTGCTTAAAAGTCGGCGTGTC : 280295 349 : rCysPheMetIleAspTrpTyrTyrLeuProSerLysThrIleArgGlyLeuIleLeu : 367 | !!:!||||||||||||||| !||||||.!!|||! ! !!:!|||||||||||| rThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeu 280296 : AACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTG : 280352 368 : MetIleAlaIleSerSerAsnProThrLysIleSerAlaGlyGlyIleValAspLeuS : 387 !!:.!!|||:!:|||!:!::! !!! !|||:!!!!!|||||| !|||:!!||||||| IlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuS 280353 : ATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCT : 280412 388 : erLeuSerThrPheGlyAsn >>>> Target Intron 2 >>>> ValLeuLys : 396 ||||||||!:!||| !!!:! 71 bp ||||||||| erLeuSerSerPheCysSer++ ++ValLeuLys 280413 : CTTTAAGCAGCTTCTGCAGCgt.........................agGTGTTAAAA : 280510 397 : ThrSerPheAlaTyrLeuAsnPhePheArgThr : 407 |||:!!||||||||||||!:!!!.!!.|||||| ThrAlaPheAlaTyrLeuSerLeuLeuArgThr 280511 : ACGGCATTCGCATATCTGAGCTTATTACGTACG : 280545 vulgar: AmOr59 280 407 . KQ414889.1 280019 280545 + 300 M 61 183 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280020 280545 300 + . gene_id 16 ; sequence AmOr59 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280020 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280020 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280545 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280545 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280020 280545 300 + . alignment_id 16 ; Query AmOr59 ; Align 280020 281 183 ; Align 280277 342 156 ; Align 280504 394 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 293 Query range: 16 -> 271 Target range: 256631 -> 257405 17 : LysTyrLysGluAspIleAlaTyrValThrLysHisAsnLysTrpIleLeuLysSerI : 36 !!.!:!|||... !!! !! !||| ! !:!! |||::!|||.!!|||||| !!| AsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 256632 : AATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTA : 256689 37 : leGlyIleTrpPro<-><->SerIlePheLysAspValSerLysPheLeuProLysIl : 53 ||||| !|||||| ||| ! !! ! !:!!..!::! !:!! !!! :! leGlyAlaTrpProProSerSerSerThrThrThrLeuGluArgAsnValSerIleVa 256690 : TAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGT : 256746 54 : eMetPheGlyLeuCysAsnPheValLeuPhePheAlaIleIleProCysIleLeuTyr : 72 !:!! ! !:!!||| !! ! !:!!!!.|||.!!:!:|||||||||:!:|||:!! lLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIleProCysLeuLeuHis 256747 : TTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCAT : 256803 73 : IleValIleGluGluAsnAspThrMetIleArgPheLysLeuPheGlyLeuLeuSerP : 92 :!! !!:!!!!:!!::!!..! ! :::::: ||| ||||||! !:!!||| ValPheLeuAspAspAspSerPheTyrMetLysValLysAsnPheGlyProMetSerH 256804 : GTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCC : 256863 93 : heCysLeuValAlaLeuIleLysTyrTrpThrLeuLeuTyrArgLysSerArgIleLy : 111 !!! :!!:!!::!! ! !!!.||| ! !||||||! !:! !!.! !|||:: isTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleAr 256864 : ATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACG : 256920 112 : sAsnCysValGluGlnIleTrpIleAspTrpGluGlnValGluLeuTyrGluAspArg : 130 : !!|||||||||!!.||| ! ||||||..!..!|||..! ! ! :!!|||!:! gTyrCysValGluHisIleGluThrAspTrpArgMetValArgArgGluLysAspGln 256921 : CTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAA : 256977 131 : GluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuMetIleIleCysAlaMetP : 150 :!!:!!|||:!!||| !!!.!::!.!.|||||| !!:!! ! !.!!|||||| . GlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaI 256978 : CAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTA : 257037 151 : heThrTyrThrGlyGlyThrIlePheHisThrIleLeuGlnTyrLysValGlyThrPh : 169 !!! ! ! !:!||| ||| ..! ! ! ! !!...!! !! !.! leMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAsnThrGluIleIl 257038 : TCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAAT : 257094 170 : eIleAspGluTyrAsnArgThrIleLysProValIleTyrProThr<->TyrAsnGly : 187 ! !! ! ! !!.!.! !|||||| !! !|||:!! ! !||| |||!!. ! eHisValGlyAsnGluThrThrIleValArgValLeuProValThrValTyrLysLys 257095 : TCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAG : 257151 188 : LeuPheAsnValGlnArgSerProIleTyrGluPheValTyrIleLeuHisCysMetC : 207 |||!!.||||||.!.!:!||||||! !!|||.!!||| !.!!:!!!!. ! !! LeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheMetGlnThrTrpS 257152 : CTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGT : 257211 208 : ysGlyTyrValMetHisSerValThrAlaGlyAlaCysGlyLeuThrAlaLeuPheAl : 226 ..! !:!! ! !!!! !|||!.!.!! !! !.!!|||.!!|||:!!||||| erSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAlaAlaValPheAl 257212 : CGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGC : 257268 227 : aThrHisAlaCysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeuIleHis : 245 ||||||||||! !||||||:!: !:!::!!!!::!! !!:!!!..!!:!!!:!::!! aThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGluPheValAsn 257269 : CACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAAT : 257325 246 : GlyLysTyrSerLysGluLysIleAsnLeuAsnAlaArgPheThrLysIleIleGluH : 265 ! !..! !:!:::|||||| ! !!:!.!. ! !|||:!:|||| GluSerArgAsnArgGluLysThrPheProPheLysGlnIleGlyValIleValGluH 257326 : GAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGC : 257385 266 : isHisLeuArgIleLeuArg : 271 |||||||||||:!:|||||| isHisLeuArgValLeuArg 257386 : ATCATTTAAGAGTGCTGAGG : 257405 vulgar: AmOr59 16 271 . KQ414889.1 256631 257405 + 293 M 24 72 G 0 6 M 144 432 G 0 3 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256632 257405 293 + . gene_id 17 ; sequence AmOr59 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256632 257405 . + . KQ414889.1 exonerate:protein2genome:local exon 256632 257405 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256632 257405 293 + . alignment_id 17 ; Query AmOr59 ; Align 256632 17 72 ; Align 256710 41 432 ; Align 257145 185 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 238 Query range: 304 -> 408 Target range: 277371 -> 277839 305 : AspTrpGluLeuAsnAsnThrIleSerLeuThrThrTyrIleIleLeuLeuIleSerL : 324 !!:|||... !!:!:!!..! !!!:!!||||||:!!.!!!!::!!|||||||||: GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 325 : euIlePheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuMetGluLys >>> : 342 !: |||||||||||| !:!!|||||||||||||||:!!|||! |||:!! etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 343 : > Target Intron 1 >>>> SerSerAsnIleGlyLeuSerCysPheMetIleA : 353 72 bp !!!!.!!!.:!!||| ! ! !!:!|||! : ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 354 : spTrpTyrTyrLeuProSerLysThrIleArgGlyLeuIleLeuMetIleAlaIleSe : 372 !!|||||||||||||||..!||| !|||! !..!|||:!!|||!!:|||:!!! !|| snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 373 : rSerAsnProThrLysIleSerAlaGlyGlyIleValAspLeuSerLeuSerThrPhe : 391 |||| ||||||:::|||||| ::::::...:::|||:!!! !|||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 392 : GlyAsn >>>> Target Intron 2 >>>> ValLeuLysThrSerPheAlaTy : 401 |||:!! 84 bp |||:!!||||||!!!|||||||| GlyAsp++ ++ValIleLysThrThrPheAlaTy 277703 : GGCGATgt.........................agGTAATAAAAACCACTTTCgcgta : 277816 402 : rLeuAsnPhePheArgThrThr : 408 |||||||......||| !||| rLeuAsnIleLeuArgGlnThr 277817 : tttaaatattctacgCCAAACG : 277839 vulgar: AmOr59 304 408 . KQ414889.1 277371 277839 + 238 M 37 111 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277839 238 + . gene_id 18 ; sequence AmOr59 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277839 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277839 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277839 238 + . alignment_id 18 ; Query AmOr59 ; Align 277372 305 111 ; Align 277555 342 156 ; Align 277795 394 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 237 Query range: 270 -> 394 Target range: 300614 -> 302036 271 : ArgPheSerAlaThrValGlnGluValLeuGlnGluLeuCysPheLeuGluCysIleG : 290 ||||||:!! !!.!|||:!!|||..!|||!::!!:!!!|||!!.:!!||| !.!!! ArgPheAlaLysAsnValGluGluThrLeuArgAspPheCysLeuValGluIlePheG 300615 : AGATTTGCAAAGAACGTTGAGGAAACTTTGCGTGACTTCTGCTTAGTGGAAATCTTCG : 300672 291 : lySerThrPheLeuIleCysLeuLeuGluTyrTyrCysIleThr >>>> Target : 305 !||||||.!.:!!:!:|||||||||||||||||||||:!:..! 97 luSerThrLeuIleLeuCysLeuLeuGluTyrTyrCysLeuVal++ 300673 : AGTCCACGCTGATTTTGTGTTTGCTCGAATACTACTGTTTGGTGgt............ : 300719 306 : Intron 1 >>>> AspTrpGluLeuAsnAsnThrIleSerLeuThrThrTyrIleI : 319 0 bp !!:|||:!! !!:!:!!||||||:!!:!! !|||!:!.!!! ++GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheT 300720 : .............agGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCA : 301729 320 : leLeuLeuIleSerLeuIlePheAsnIlePheIleLeuCysTyrIleGlyGluLeuLe : 338 !||||||! |||!!!! !|||||||||||||||!!!|||||||||||||||:!!|| hrLeuLeuThrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLe 301730 : CTCTGTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCT : 301786 339 : uMetGluLysSerSerAsnIleGlyLeuSerCysPheMetIleAspTrpTyrTyrLeu : 357 | |||:!! ! !!.! !.!! !||| ......... !|||!:!! ! uSerGluGlnValLeuThrTyrSerArgSerPheHisPhePheSerMetTyrPheHis 301787 : TTCCGAACAGGTACTTACTTACAGTAGAagtttccatttcttttcaatGTATTTCCAC : 301843 358 : {P} >>>> Target Intron 2 >>>> {ro}SerLysThrIleArgGlyLeuI : 366 { } 80 bp {!!}:!!|||! ! ! !! !|||| {A}++ +-{la}AlaLysArgAlaTyrAspLeuI 301844 : {G}gt.........................ac{CA}GCGAAGAGAGCATACGATCTTA : 301950 367 : leLeuMetIleAlaIleSerSerAsnProThrLysIleSerAlaGlyGlyIleValAs : 385 |||||:!:! !!.!||||||..! !!||| !!|||:!!!!!|||||| !|||:!!|| leLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleAs 301951 : TTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGA : 302007 386 : pLeuSerLeuSerThrPheGlyAsnVal : 394 ||||||||||!:!||||||.!!::!||| pLeuSerLeuAsnThrPheSerSerVal 302008 : CTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: AmOr59 270 394 . KQ414889.1 300614 302036 + 237 M 34 102 5 0 2 I 0 966 3 0 2 M 53 159 S 0 1 5 0 2 I 0 76 3 0 2 S 1 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300615 302036 237 + . gene_id 19 ; sequence AmOr59 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300615 300716 . + . KQ414889.1 exonerate:protein2genome:local exon 300615 300716 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300717 300718 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300717 301686 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301685 301686 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301687 301846 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301846 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301847 301848 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301847 301926 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301925 301926 . + . intron_id 1 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 301927 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301927 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300615 302036 237 + . alignment_id 19 ; Query AmOr59 ; Align 300615 271 102 ; Align 301687 305 159 ; Align 301929 359 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 232 Query range: 304 -> 406 Target range: 258264 -> 258729 305 : AspTrpGluLeuAsnAsnThrIleSerLeuThrThrTyrIleIleLeuLeuIleSerL : 324 :::|||... !...::: :::|||::::::|||.!!!!::!!|||||||||| GluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheMetIleLeuIleSerL 258265 : gaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTATGATACTCATATcac : 258322 325 : euIlePheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuMetGluLys >>> : 342 || ||||||||||||::::::|||||||||||||||:!!|||! |||:!! euSerPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluGln++ 258323 : tttctttcaatatttttgtaatatgttACATAGGTGAAATATTAACAGAACAGgt... : 258378 343 : > Target Intron 1 >>>> SerSerAsnIleGlyLeuSerCysPheMetIleA : 353 90 bp !!!!.!!!.:!!||| ! ! !!:!|||! !| ++CysLysLysValGlyAspValValTyrMetThrA 258379 : ......................agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAG : 258499 354 : spTrpTyrTyrLeuProSerLysThrIleArgGlyLeuIleLeuMetIleAlaIleSe : 372 |||||||||||||||||..!|||! !|||! !! !|||||||||:!:|||||| !|| spTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLeuValIleAlaArgSe 258500 : ACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTTGGTAATCGCACGATC : 258556 373 : rSerAsnProThrLysIleSerAlaGlyGlyIleValAspLeuSerLeuSerThrPhe : 391 |||| !..!:!!|||!!!|||||| ... ::!|||:!!! !|||||| rSerValValValGlnIleThrAlaGlyLysPhePheHisMetSerIleTyrThrPhe 258557 : GAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatGTCCATTTACACATTC : 258613 392 : GlyAsn >>>> Target Intron 2 >>>> ValLeuLysThrSerPheAlaTy : 401 .!!:!! 69 bp |||:!!||||||||||||||||| SerAsp++ ++ValIleLysThrSerPheAlaTy 258614 : AGCGATgt.........................agGTAATAAAAACCTCTTTCGCGTA : 258712 402 : rLeuAsnPhePheArg : 406 |||||||!!..!.||| rLeuAsnLeuLeuArg 258713 : TTTGAATTTACTGCGT : 258729 vulgar: AmOr59 304 406 . KQ414889.1 258264 258729 + 232 M 37 111 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258265 258729 232 + . gene_id 20 ; sequence AmOr59 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258729 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258729 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258265 258729 232 + . alignment_id 20 ; Query AmOr59 ; Align 258265 305 111 ; Align 258466 342 156 ; Align 258691 394 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 219 Query range: 300 -> 397 Target range: 210651 -> 211941 301 : TyrCysIleThrAspTrpGluLeuAsnAsnThrIleSerLeuThrThrTyrIleIleL : 320 !:! !:!! !!!:|||!!:! !!!.:!! !!|||||| ! !|||||||||:!!| PheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValL 210652 : TTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTAC : 210709 321 : euLeuIleSerLeuIlePheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuMe : 339 |||||! !|||:!!! |||||||||||||||!!!|||||||||||||||:!!||| euLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAl 210710 : TCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGC : 210766 340 : tGluLys >>>> Target Intron 1 >>>> SerSerAsnIleGlyLeuSerC : 349 |||:!: 999 bp !!! !!!.:!!||| !!.!! aGluGln++ ++ThrValLysValGlyGluLysS 210767 : TGAACAggt.........................agACAGTAAAAGTTGGAGAAAAGT : 211795 350 : ysPheMetIleAspTrpTyrTyrLeuProSerLysThrIleArgGlyLeuIleLeuMe : 368 !!:!||||||||||||||| :!!|||.!!|||! ! ! !! !:!! !||||| erTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValValProLeuMe 211796 : CTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGAT : 211852 369 : tIleAlaIleSerSerAsnProThrLysIleSerAlaGlyGlyIleValAspLeuSer : 387 ||||:!!!!:||| !::: !!|||||||||!!!||||||..!:!!:!!! !|||||| tIleSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleValLeuSer 211853 : GATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTTCTTTCA : 211909 388 : LeuSerThrPheGlyAsnValLeuLysThr : 397 :!!|||!:!||||||:!!||| ||| IleSerSerPheGlyAspValSerValThr 211910 : ATCAGTAGTTTCGGTGACGTAAGtgttaca : 211941 vulgar: AmOr59 300 397 . KQ414889.1 210651 211941 + 219 M 41 123 5 0 2 I 0 995 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210652 211941 219 + . gene_id 21 ; sequence AmOr59 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 210652 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210652 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211941 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211941 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210652 211941 219 + . alignment_id 21 ; Query AmOr59 ; Align 210652 301 123 ; Align 211774 342 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 215 Query range: 304 -> 408 Target range: 272836 -> 273299 305 : AspTrpGluLeuAsnAsnThrIleSerLeuThrThrTyrIleIleLeuLeuIleSerL : 324 :!:||| !:!!:!! ! |||||||||||||||.!!!!::!!|||||||||: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 325 : euIlePheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuMetGluLysSer{S : 343 !: |||||||||||||||::!|||||||||||||||:!!|||! !|||!:! !{! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArgVal{I 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGGTA{A : 272951 344 : e} >>>> Target Intron 1 >>>> {r}AsnIleGlyLeuSerCysPheMet : 351 } 70 bp {!}...|||||| ! ! !!:!||| l}+- +-{e}LysIleGlyGluValValTyrMet 272952 : T}gc.........................aa{a}aaaattggcGAGGTAGTTTACATG : 273045 352 : IleAspTrpTyrTyrLeuProSerLysThrIleArgGlyLeuIleLeuMetIleAlaI : 371 ! :!!|||||||||||||||.!!||| !|||! !! !|||||||||!!:|||:!!! ThrAsnTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerA 273046 : ACGAACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAA : 273105 372 : leSerSerAsnProThrLysIleSerAlaGlyGlyIleValAspLeuSerLeuSerTh : 390 !!!!||| ! !! !||||||!!!|||||| !!|||||| !:!!|||:!!! !|| rgCysSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrTh 273106 : GATGCAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACAC : 273162 391 : rPheGlyAsn >>>> Target Intron 2 >>>> ValLeuLysThrSerPheA : 400 |||||||:!! 81 bp |||:!!|||!:!:!!|||| rPheGlyAsp++ ++ValMetLysSerAlaPheA 273163 : GTTCGGCGATgt.........................aggtGATGAAAAGTGCGTTCG : 273273 401 : laTyrLeuAsnPhePheArgThrThr : 408 |||||||||||.!..!.||| !||| laTyrLeuAsnMetLeuArgGlnThr 273274 : CGTACTTAAATATGCTACGACAAACG : 273299 vulgar: AmOr59 304 408 . KQ414889.1 272836 273299 + 215 M 38 114 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 50 150 5 0 2 I 0 77 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273299 215 + . gene_id 22 ; sequence AmOr59 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272952 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272952 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272953 272954 . + . intron_id 1 ; splice_site "gc" KQ414889.1 exonerate:protein2genome:local intron 272953 273022 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273021 273022 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 273023 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273023 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273299 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273299 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273299 215 + . alignment_id 22 ; Query AmOr59 ; Align 272837 305 114 ; Align 273024 344 150 ; Align 273255 394 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 209 Query range: 296 -> 394 Target range: 214605 -> 215022 297 : LeuLeuGluTyrTyrCysIleThrAspTrpGluLeuAsnAsnThrIleSerLeuThrT : 316 :::::::::::: ::: :!:|||.!.! !|||||| !! !!!! !..!| IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 317 : hrTyrIleIleLeuLeuIleSerLeuIlePheAsnIlePheIleLeuCysTyrIleGl : 335 |||||:!::!:|||! !||||||||| |||||||||||||||...||||||||||| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 336 : yGluLeuLeuMetGluLys >>>> Target Intron 1 >>>> SerSerAsnI : 345 |||||||:!! |||:!! 123 bp !!!!.!!!.: yGluLeuValSerGluGln++ ++CysLysLysV 214721 : CGAGCTTGTGTCTGAACAGgt.........................agTGCAAAAAGG : 214873 346 : leGlyLeuSerCysPheMetIleAspTrpTyrTyrLeuProSerLysThrIleArgGl : 364 !!||| ! !! !:!||||||!!:|||||| ||||||.!!!!.! !! ! ! ! alGlyGluValSerTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCy 214874 : TCGGAGAAGTATCGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTG : 214930 365 : yLeuIleLeuMetIleAlaIleSerSerAsnProThrLysIleSerAlaGlyGlyIle : 383 !! !||||||!!:!!:|||!!:|||!:!::: !!..!|||.!!!!!||||||..!!!: sCysIleLeuIleMetAlaMetSerAsnSerSerValLysPheThrAlaGlyAsnMet 214931 : TTGCATTTTGATCATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATG : 214987 384 : ValAspLeuSerLeuSerThrPheGlyAsnVal : 394 |||!!:||||||:!!|||||||||.!!!:!||| ValGluLeuSerIleSerThrPheSerSerVal 214988 : GTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215022 vulgar: AmOr59 296 394 . KQ414889.1 214605 215022 + 209 M 45 135 5 0 2 I 0 119 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 215022 209 + . gene_id 23 ; sequence AmOr59 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 215022 209 + . alignment_id 23 ; Query AmOr59 ; Align 214606 297 135 ; Align 214864 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 208 Query range: 301 -> 403 Target range: 238402 -> 238903 302 : CysIleThrAspTrpGluLeuAsnAsnThrIleSerLeuThrThrTyrIleIleLeuL : 321 |||... !!!:|||! ! !!:!:!!.!!! !! !|||! !||||||.!!:!! !| CysPhe***GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheValAlaL 238403 : tgtttctaGGAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTGTAGCAC : 238460 322 : euIleSerLeuIlePheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuMetGl : 340 ||:!!:!!:!!:!!! !|||! !||||||||||||||||||.!!||| !|||! || euValAlaIleValSerAsnThrPheIleLeuCysTyrIleSerGluArgLeuThrGl 238461 : TCGTTGCTATTGTTTCTAATACATTTATACTCTGTTATATCAGCGAAAGGCTGACAGA : 238517 341 : uLys >>>> Target Intron 1 >>>> SerSerAsnIleGlyLeuSerCysP : 350 |:!! 106 bp !!!! !!!.:!!||| ! ! !! uGln++ ++CysLeuLysValGlyGluValValT 238518 : ACAGgt.........................agTGCTTGAAAGTTGGTGAAGTGGTTT : 238653 351 : heMetIleAspTrpTyrTyrLeuProSerLysThrIleArgGlyLeuIleLeuMetIl : 369 :!|||! !||||||||||||||||||..!!:!! !|||! !! !|||||||||!!:|| yrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIl 238654 : ACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCAT : 238710 370 : eAlaIleSerSerAsnProThrLysIleSerAlaGlyGlyIleValAspLeuSerLeu : 388 | ! !|||!:! !..!|||:!!!!!|||||| !:!!:!! !!:!!|||||| eLysArgSerAsnValValValLysValThrAlaGlyLysValLeuHisMetSerLeu 238711 : TAAACGATCGAACGTGGTCGTTAAAGTCACCGCTGGAAAAGTATTACATATGTCGCTT : 238767 389 : SerThrPheGlyAsn >>>> Target Intron 2 >>>> ValLeuLysThrSe : 398 ! !|||||||||:!! 89 bp |||:!!||||||.! TyrThrPheGlyAsp++ ++ValValLysThrGl 238768 : TACACGTTCGGCGATgt.........................agGTAGTAAAAACAGG : 238886 399 : rPheAlaTyrLeuAsn : 403 !|||||||||:!!||| yPheAlaTyrMetAsn 238887 : ATTCGCCTACATGAAT : 238903 vulgar: AmOr59 301 403 . KQ414889.1 238402 238903 + 208 M 40 120 5 0 2 I 0 102 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238403 238903 208 + . gene_id 24 ; sequence AmOr59 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 238403 238522 . + . KQ414889.1 exonerate:protein2genome:local exon 238403 238522 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238523 238524 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238523 238628 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 238627 238628 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238629 238784 . + . KQ414889.1 exonerate:protein2genome:local exon 238629 238784 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238785 238786 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238785 238873 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 238872 238873 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238874 238903 . + . KQ414889.1 exonerate:protein2genome:local exon 238874 238903 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238403 238903 208 + . alignment_id 24 ; Query AmOr59 ; Align 238403 302 120 ; Align 238629 342 156 ; Align 238874 394 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 301 -> 403 Target range: 254062 -> 254549 302 : CysIleThrAspTrpGluLeuAsnAsnThrIleSerLeuThrThrTyrIleIleLeuL : 321 |||.!! !!!:||| ! !!:!:!!.!! !! !||| !|||||||||:!! !| CysPhe***GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrL 254063 : tgctTCTAGGAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACAC : 254120 322 : euIleSerLeuIlePheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuMetGl : 340 ||:!!:!!:!!:!! ||| |||::::::|||||||||.!!!!: !|||! || euValAlaValValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGl 254121 : TCGTTGCTGTTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGA : 254177 341 : uLys >>>> Target Intron 1 >>>> SerSerAsnIleGlyLeuSerCysP : 350 |:!! 92 bp !!!! !!!.:!!||| ! ! !! uGln++ ++CysLeuLysValGlyGluValValT 254178 : ACAGgt.........................agTGCTTGAAAGTTGGTGAAGTGGTTT : 254299 351 : heMetIleAspTrpTyrTyrLeuProSerLysThrIleArgGlyLeuIleLeuMetIl : 369 :!|||! !||||||||||||||||||..!!:!! !|||! !! !|||||||||!!:|| yrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIl 254300 : ACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCAT : 254356 370 : eAlaIleSerSerAsnProThrLysIleSerAlaGlyGlyIleValAspLeuSerLeu : 388 |.!! !|||!:! !..!:!!|||!!!|||||| ||| :::|||||| eThrArgSerAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeu 254357 : TACACGATCGAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTT : 254413 389 : SerThrPheGlyAsn >>>> Target Intron 2 >>>> ValLeuLysThrSe : 398 ! !|||||||||:!! 89 bp |||:!!||||||.! TyrThrPheGlyAsp++ ++ValValLysThrGl 254414 : TACACGTTCGGCGATgt.........................agGTAGTAAAAACAGG : 254532 399 : rPheAlaTyrLeuAsn : 403 !||||||||||||||| yPheAlaTyrLeuAsn 254533 : ATTCGCCTACTTGAAT : 254549 vulgar: AmOr59 301 403 . KQ414889.1 254062 254549 + 204 M 40 120 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254063 254549 204 + . gene_id 25 ; sequence AmOr59 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254063 254182 . + . KQ414889.1 exonerate:protein2genome:local exon 254063 254182 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254183 254184 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254183 254274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254273 254274 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254275 254430 . + . KQ414889.1 exonerate:protein2genome:local exon 254275 254430 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254431 254432 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254431 254519 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 254518 254519 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254520 254549 . + . KQ414889.1 exonerate:protein2genome:local exon 254520 254549 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254063 254549 204 + . alignment_id 25 ; Query AmOr59 ; Align 254063 302 120 ; Align 254275 342 156 ; Align 254520 394 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 202 Query range: 304 -> 394 Target range: 219328 -> 219671 305 : AspTrpGluLeuAsnAsnThrIleSerLeuThrThrTyrIleIleLeuLeuIleSerL : 324 !!:|||:!!! !|||:!!..!! ||| !..!||||||||||||||||||||||||| GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 325 : euIlePheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuMetGluLys >>> : 342 || |||||||||||||||...|||||||||||||||:!!:!! |||:!: euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln++ 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAggt... : 219442 343 : > Target Intron 1 >>>> SerSerAsnIleGlyLeuSerCysPheMetIleA : 353 73 bp !! ...|||||| !:!||||||! ++CysArgLysIleGlyGluMetSerTyrMetIleG 219443 : ......................agTGtaggaaaattggagaaatgtCGTACATGATCG : 219546 354 : spTrpTyrTyrLeuProSerLysThrIleArgGlyLeuIleLeuMetIleAlaIleSe : 372 !:|||||| ||| !!.!!|||! !! ! ! !! !:!!|||! ||||||!!:|| luTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaMetSe 219547 : AATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTATGTC : 219603 373 : rSerAsnProThrLysIleSerAlaGlyGlyIleValAspLeuSerLeuSerThrPhe : 391 |!:!::! !!! !|||:!:!!!||||||..!!!:|||!!:||||||:!!||||||||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPhe 219604 : GAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCACTTTT : 219660 392 : GlyAsnVal : 394 !:!!||| ThrAspVal 219661 : ACCGACGTG : 219671 vulgar: AmOr59 304 394 . KQ414889.1 219328 219671 + 202 M 37 111 5 0 2 I 0 69 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219671 202 + . gene_id 26 ; sequence AmOr59 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219671 202 + . alignment_id 26 ; Query AmOr59 ; Align 219329 305 111 ; Align 219513 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 195 Query range: 280 -> 405 Target range: 286806 -> 287255 281 : GlnGluLeuCysPheLeuGluCysIleGlySerThrPheLeuIleCysLeuLeuGluT : 300 .!.!!:||||||!:!! !.!. !:!! !:!!! !.!! !.!! !:!!! !..!! AspAspLeuCysTyrTyrHisThrValMetAlaIleIleAlaPheValMetTyrSerL 286807 : GACGACTTGTGTTATTACCATACTGTAATGGCAATAATTGCATTCGTCATGTACTCGT : 286864 301 : yrTyrCysIleThrAspTrpGluLeuAsnAsnThrIleSerLeuThrThrTyrIleIl : 319 ! !.!! !!!:||||||! !!:!.!.||||||.!! !! !|||||| !! euSerValPhe***GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysTh 286865 : TGTCAGTTTTCTAGGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCAC : 286921 320 : eLeuLeuIleSerLeuIlePheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeu : 338 ||||||:!!|||!!!! ||||||:!!||||||||||||||||||||||||:!!||| rLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeu 286922 : GTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTC : 286978 339 : MetGluLysSerSerAsnIleGlyLeuSerCysPheMetIleAsp{Tr} >>>> Ta : 354 |||::: ||| !!! !!:! !!!:{ } SerGluGlnValPhePheIleThrSerThrIleTyrTyrCysGlu{Th}+- 286979 : TCCGAACaggtatttttcattacttcaACGATCTATTATTGTGAA{AC}ga....... : 287030 355 : rget Intron 1 >>>> {p}TyrTyrLeuProSerLysThrIleArgGlyLeuIl : 366 74 bp {!}||| !||||||.!!|||||| !!:!|||||||| -+{r}TyrArgLeuProGlyLysThrAlaGlnGlyLeuIl 287031 : ..................tg{G}TATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGAT : 287136 367 : eLeuMetIleAlaIleSerSerAsnProThrLysIleSerAlaGlyGlyIleValAsp : 385 ||||!!:.!!|||:!:|||!:!::! !!! !|||:!!!!!|||||| !|||:!!||| eLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAsp 287137 : ACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGAT : 287193 386 : LeuSerLeuSerThrPheGlyAsnValLeuLysThrSerPheAlaTyrLeuAsnPheP : 405 ||||||||||||!:!||| !!!:!||| !! ! !!:!!!.:!!|||! !:!!!!.! LeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeuT 287194 : CTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTGT : 287253 406 : he : 405 :: yr 287254 : ac : 287255 vulgar: AmOr59 280 405 . KQ414889.1 286806 287255 + 195 M 73 219 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286807 287255 195 + . gene_id 27 ; sequence AmOr59 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286807 287027 . + . KQ414889.1 exonerate:protein2genome:local exon 286807 287027 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287028 287029 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 287028 287101 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287100 287101 . + . intron_id 0 ; splice_site "TG" KQ414889.1 exonerate:protein2genome:local cds 287102 287255 . + . KQ414889.1 exonerate:protein2genome:local exon 287102 287255 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286807 287255 195 + . alignment_id 27 ; Query AmOr59 ; Align 286807 281 219 ; Align 287103 355 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 184 Query range: 304 -> 394 Target range: 224323 -> 224658 305 : AspTrpGluLeuAsnAsnThrIleSerLeuThrThrTyrIleIleLeuLeuIleSerL : 324 :::|||... ::::!! !! !||| !..!||||||.!!|||||||||!!:|||| GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 325 : euIlePheAsnIlePheIleLeuCysTyrIleGlyGluLeu >>>> Target Int : 338 || |||||||||||||||...|||||||||||||||||| 65 bp euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeu++ 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGgt............... : 224425 339 : ron 1 >>>> LeuMetGluLysSerSerAsnIleGlyLeuSerCysPheMetIleA : 353 !!!.!. ::: ......|||||| ! !! !:!||||||| --PhePheProGlnCysGluLysIleGlyGlnValSerTyrMetIleA 224426 : ..........taTTTTTTCCtcagtgtgaaaaaattggacaAGTGTCGTACATGATCG : 224533 354 : spTrpTyrTyrLeuProSerLysThrIleArgGlyLeuIleLeuMetIleAlaIleSe : 372 |||||||| ||| !!.!!!!.! !! !! ! !!! !||||||!!:||||||!!:|| spTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 224534 : ACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGATGTC : 224590 373 : rSerAsnProThrLysIleSerAlaGlyGlyIleValAspLeuSerLeuSerThrPhe : 391 |!:!::! !!! !|||:!:!!!||||||..!!!:|||!!:|||!!!|||!!!|||||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThrPhe 224591 : CAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACTTTC : 224647 392 : GlyAsnVal : 394 |||:!!||| GlyAspVal 224648 : GGTGACGTA : 224658 vulgar: AmOr59 304 394 . KQ414889.1 224323 224658 + 184 M 33 99 5 0 2 I 0 61 3 0 2 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224658 184 + . gene_id 28 ; sequence AmOr59 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224324 224422 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224422 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224423 224424 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224423 224487 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224486 224487 . + . intron_id 0 ; splice_site "TA" KQ414889.1 exonerate:protein2genome:local cds 224488 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224488 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224658 184 + . alignment_id 28 ; Query AmOr59 ; Align 224324 305 99 ; Align 224488 338 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 187 -> 253 Target range: 202712 -> 202910 188 : LeuPheAsnValGlnArgSerProIleTyrGluPheValTyrIleLeuHisCysMetC : 207 :!!.!!:!!|||::! !||||||:!: !!|||.!! !!!:! :!!!.. !:!:. IleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleValA 202713 : ATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAG : 202770 208 : ysGlyTyrValMetHisSerValThrAlaGlyAlaCysGlyLeuThrAlaLeuPheAl : 226 .!! ! !:!!!!:|||.!!||||||!.!||||||||| !!||||||||||||||||| laValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAl 202771 : CTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGC : 202827 227 : aThrHisAlaCysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeuIleHis : 245 |..!|||! !|||||||||!!:|||:!!:!!!!:||| !!|||.!. !!|||!!: !! aValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMetAsp 202828 : GGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGAT : 202884 246 : GlyLysTyrSerLysGluLysIle : 253 |||:::! ..!! !...|||!!: GlyArgSerAspMetSerLysMet 202885 : GGTCGTTCGGATATGAGTAAAATG : 202910 vulgar: AmOr59 187 253 . KQ414889.1 202712 202910 + 140 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202713 202910 140 + . gene_id 29 ; sequence AmOr59 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202713 202910 . + . KQ414889.1 exonerate:protein2genome:local exon 202713 202910 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202713 202910 140 + . alignment_id 29 ; Query AmOr59 ; Align 202713 188 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 209 -> 253 Target range: 202973 -> 203105 210 : ValMetHisSerValThrAlaGlyAlaCysGlyLeuThrAlaLeuPheAlaThrHisA : 229 :!!!!:|||.!!||||||!.!||||||||| !!||||||||||||||||||..!|||! LeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAlaValHisA 202974 : CTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTATTTGCGGTTCACG : 203031 230 : laCysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeuIleHisGlyLysTy : 248 !|||||||||!!:|||:!!:!!!!:||| !!|||.!. !!|||!!: !!|||:::! spCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMetAspGlyArgSe 203032 : ATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGATGGTCGTTC : 203088 249 : rSerLysGluLysIle : 253 ..!! !...|||!!: rAspMetSerLysMet 203089 : GGATATGAGCAAAATG : 203105 vulgar: AmOr59 209 253 . KQ414889.1 202973 203105 + 119 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202974 203105 119 + . gene_id 30 ; sequence AmOr59 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202974 203105 . + . KQ414889.1 exonerate:protein2genome:local exon 202974 203105 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202974 203105 119 + . alignment_id 30 ; Query AmOr59 ; Align 202974 210 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 349 -> 397 Target range: 244682 -> 244826 350 : PheMetIleAspTrpTyrTyrLeuProSerLysThrIleArgGlyLeuIleLeuMetI : 369 !:!|||! !||||||||||||||||||..!!:!! !|||! !! !|||||||||!!:| TyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleI 244683 : TACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCA : 244740 370 : leAlaIleSerSerAsnProThrLysIleSerAlaGlyGlyIleValAspLeuSerLe : 388 || ! !|||!:!! !..!:!!|||!!!|||||| !:!!:!! !!:!!||||| leLysArgSerAsnMetValValGluIleThrAlaGlyLysValLeuHisMetSerLe 244741 : TTAAACGATCGAACATGGTCGTTGAAATCACCGCTGGAAAAGTATTACATATGTCGCT : 244797 389 : uSerThrPheGlyAsnValLeuLysThr : 397 |! !|||||||||:!!||| !:!!||| uTyrThrPheGlyAspValSerGluThr 244798 : TTACACGTTCGGCGATGTAAGTGAAACT : 244826 vulgar: AmOr59 349 397 . KQ414889.1 244682 244826 + 116 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244683 244826 116 + . gene_id 31 ; sequence AmOr59 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244683 244826 . + . KQ414889.1 exonerate:protein2genome:local exon 244683 244826 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244683 244826 116 + . alignment_id 31 ; Query AmOr59 ; Align 244683 350 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 304 -> 341 Target range: 264537 -> 264648 305 : AspTrpGluLeuAsnAsnThrIleSerLeuThrThrTyrIleIleLeuLeuIleSerL : 324 !!:|||||| !:!:::: :::||||||||||||.!!!!::!!|||||||||: GluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerM 264538 : GAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATACTGATATCAA : 264595 325 : euIlePheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuMetGluLys : 341 !! ! !|||||||||:!!:!!|||||||||||||||:!!|||! |||::: etCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGln 264596 : TGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcag : 264648 vulgar: AmOr59 304 341 . KQ414889.1 264537 264648 + 111 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264538 264648 111 + . gene_id 32 ; sequence AmOr59 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264538 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264538 264648 111 + . alignment_id 32 ; Query AmOr59 ; Align 264538 305 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 304 -> 341 Target range: 206050 -> 206161 305 : AspTrpGluLeuAsnAsnThrIleSerLeuThrThrTyrIleIleLeuLeuIleSerL : 324 !!:|||||| !|||||||||! !:!!:!!! !..!||||||! |||! !||||||! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 325 : euIlePheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuMetGluLys : 341 !! !||| !:!!|||||||||||||||||||||:!!||||||!!:!!::!! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAA : 206161 vulgar: AmOr59 304 341 . KQ414889.1 206050 206161 + 110 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206161 110 + . gene_id 33 ; sequence AmOr59 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206161 110 + . alignment_id 33 ; Query AmOr59 ; Align 206051 305 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1271 Query range: 5 -> 403 Target range: 226891 -> 230518 6 : SerIleIleGlyHisAspAspTyrGluArgAsnValAsnLeuSerIleArgTrpAsnA : 25 |||:!! !.!.:!!||||||:!!..! !!:!!||||||||||||!:!! !|||| SerLeuAlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnA 226892 : TCTCTCGCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATC : 226949 26 : rgPheLeuLeuLysSerLeuGlyThrTrpProAsnLeuArgGlu<->SerArgIleGl : 43 ||!::||||||||| !!||||||! !||||||:::! !|||:!! ||||||||||| rgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGl 226950 : GTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGG : 227006 44 : yLysCysTyrSerValLeuIleGlyIleValCysTyrGlyLeuIleSerPheMetLeu : 62 |!:!|||!:!||| !|||!!:|||.!!:!!||||||!.!|||!!:|||||| !||| yArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeu 227007 : AAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTG : 227063 63 : ThrSerSerAsnMetPheLeuValValGluValLysAspThrTyrAsnArgIleLysM : 82 ..!||||||..!:!!!:!:!!|||:!!|||||||||! !.!!||||||! !:!:|||| ValSerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysM 227064 : GTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAA : 227123 83 : etIleGlyProLeuSerPhePheAlaMetThrLeuIleLysTyrTyrPheLeuThrPh : 101 |||||||||||:!!|||||||||||||||:!!|||:!!||||||! !.!.|||||||| etIleGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPh 227124 : TGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTT : 227180 102 : eHisGluGluAsnIleArgLysGlyIleGluHisIleGluTrpAspTrpLysAsnVal : 120 |||||||!!::!!|||! !:!! !!:!!|||!..|||:!!|||||||||||||||:!! eHisGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIle 227181 : CCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATC : 227237 121 : LysHisGluGluAspLysArgIleMetIleGluTyrAlaAsnTyrGlyLysLysLeuA : 140 !:!:!! !||||||!:!!.!:!:|||:!: !|||||| !!||||||!:!|||||| ArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuI 227238 : AGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGA : 227297 141 : laLeuIleSerIlePhePheValTyrSerAlaPheValPheTyrTyrPheValValPr : 159 ! !|||!!!! |||||||||!:!|||:::|||||||||:::|||.!!|||||||| leThrIleCysThrPhePheValPheSerSerPheValPhePheTyrIleValValPr 227298 : TCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACC : 227354 160 : oIleSerValGlyLysIle<-><->ArgAspGluAsnLeuThrPheIleProLeuPro : 176 ||||!:!!.!|||!..:!! ..!|||! !|||! !!:!!:!|||! !:!!||| oIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetPro 227355 : TATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCG : 227411 177 : PheProSerSerLysLeuIleAlaAspMetArgGlnSerProAlaAsnGluIleLeuP : 196 ||||||! ! !!|||:!!|||||||||:!:||| ! |||||| !|||||||||!!!| PheProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIlePheP 227412 : TTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCT : 227471 197 : heSerValGlnValLeuSerGlyValIleIleHisAlaIleThrAlaThrAlaValSe : 215 ||||||||||| !!:!!!!!|||:!!:!::!:|||!.!:!!|||:!!.!!||| !|| heSerValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSe 227472 : TTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAG : 227528 216 : rIleAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlnMetLeuMetAsnTrp : 234 |!!:||||||:!!.!!||||||||||||||||||||||||:!!:!!|||:!!::!||| rMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrp 227529 : TATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGG : 227585 235 : LeuGluCysLeuValAspGlyArgSerAspMetAsnLysIleValAspLysArgIleA : 254 |||! ! !|||:!!|||||||||:!!||||||!:!|||! !:!!||| ! ||||||| LeuGlyHisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAspAspArgIleA 227586 : CTGGGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCG : 227645 255 : laLysIleValValGlnHisAspArgIleLeu{Ly} >>>> Target Intron 1 : 265 ||!..||||||..!!!.|||! !|||||||||{!!} 396 bp laSerIleValThrHisHisValArgIleLeu{As}++ 227646 : CTAGCATCGTCACTCACCACGTTCGAATATTG{AA}gt.................... : 227682 266 : >>>> {s}PheLeuAlaLeuThrGluArgAlaLeuGlnGlnIleSerPheValGlu : 281 {.}||||||||||||! !|||!:!.!!:!!|||||||||:!!||||||||| ++{n}PheLeuAlaLeuIleGluLysThrMetGlnGlnIleAlaPheValGlu 227683 : .....ag{C}TTTCTGGCCCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAA : 228122 282 : PheLeuGlyCysThrMetAsnMetCysLeuLeuGlyTyrTyrLeuIleVal >>>> : 299 |||||||||||||||!!:! !:!!||||||:!!! !||||||:!!|||..! PheLeuGlyCysThrIleIleLeuCysLeuIleGluTyrTyrIleIleThr++ 228123 : TTTTTAGGGTGTACAATAATTCTGTGCCTCATCGAGTATTACATCATAACGgt..... : 228178 300 : Target Intron 2 >>>> GluTrpAsnProLysGluIleSerLeuSerLeuThr : 310 72 bp ||||||||||||||||||:!!!!!!!!:!!:!!||| ++GluTrpAsnProLysGluLeuThrPheAlaValThr 228179 : ....................agGAATGGAATCCGAAAGAGTTAACATTTGCTGTAACT : 228281 311 : TyrIleSerLeuLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGlyA : 330 ||| !:!!||||||:!!|||||||||||||||||||||||||||||||||||||||! TyrSerAlaLeuLeuLeuSerPheThrPheAsnIlePheIlePheCysTyrIleGlyG 228282 : TACTCAGCGTTACTTTTATCCTTTAccttcaatattttcatattttgttaTATAGGAG : 228341 331 : spLeuValAlaGluGln >>>> Target Intron 3 >>>> CysGlnLysVal : 339 !::!!|||||||||!!. 1889 bp |||::!|||||| luIleValAlaGluHis++ ++CysArgLysVal 228342 : AAATTGTTGCCGAACACgt.........................agTGCAGAAAAGTC : 230257 340 : GlyGluMetThrTyrMetIleGluTrpTyrArgLeuThrGlyLysLysLysLeuCysC : 359 ||||||! !:!!||||||||||||||||||||||||||||||!!.||||||||||||| GlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyAsnLysLysLeuCysC 230258 : GGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAAACAAGAAGCTCTGTT : 230317 360 : ysValLeuIleIleAlaMetSerAsnSerSerIleLysPheThrAlaGlyAsnMetVa : 378 ||:!!|||||||||||||||||||||!!!|||! ||||||||||||||||||||||| ysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheThrAlaGlyAsnMetVa 230318 : GCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTACAGCAGGAAACATGGT : 230374 379 : lGluLeuSerIleTyrThrPheSerAsp >>>> Target Intron 4 >>>> V : 388 ||||||||||:!! !!|||||||||||| 67 bp | lGluLeuSerValAsnThrPheSerAsp++ ++V 230375 : TGAATTATCCGTAAACACTTTCAGCGACgt.........................agG : 230471 389 : alValLysThrSerValAlaPheLeuAsnMetLeuArgAlaLeuThr : 403 ||||||||||||||:!!!.!||||||||||||||||||.!!|||||| alValLysThrSerMetGlyPheLeuAsnMetLeuArgThrLeuThr 230472 : TCGTTAAAACGTCCATGGGTTTCTTAAACATGCTACGAACACTGACG : 230518 vulgar: AmOr30 5 403 . KQ414889.1 226891 230518 + 1271 M 34 102 G 0 3 M 126 378 G 0 6 M 99 297 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226892 230518 1271 + . gene_id 1 ; sequence AmOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226892 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226892 227679 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230403 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230403 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 230404 230405 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 230404 230470 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 230469 230470 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230471 230518 . + . KQ414889.1 exonerate:protein2genome:local exon 230471 230518 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226892 230518 1271 + . alignment_id 1 ; Query AmOr30 ; Align 226892 6 102 ; Align 226997 40 378 ; Align 227381 166 297 ; Align 228077 266 99 ; Align 228248 299 111 ; Align 230248 336 156 ; Align 230471 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1184 Query range: 11 -> 403 Target range: 217153 -> 219803 12 : AspTyrGluArgAsnValAsnLeuSerIleArgTrpAsnArgPheLeuLeuLysSerL : 31 !!:||||||:::|||:::||||||||||||!:!|||||||||!::||||||||| !!: GluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProM 217154 : GAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGA : 217211 32 : euGlyThrTrpProAsnLeuArg<->GluSerArgIleGlyLysCysTyrSerValLe : 49 !!||| !|||||||||! !||| !!!||| ! !!||| ! !! ! !|| etGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLe 217212 : TGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACT : 217268 50 : uIleGlyIleValCysTyrGlyLeuIleSerPheMetLeuThrSerSerAsnMetPhe : 68 ||||..! !:!!|||||||||||||||||||||:!:!!!..! !!!!!::!|||!:! uIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyr 217269 : GATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTAC : 217325 69 : LeuValValGluValLysAspThrTyrAsnArgIleLysMetIleGlyProLeuSerP : 88 :!! !!:!!||||||:!!||| !|||:!!!:!:!:|||:!!.!!|||||||||! !| ValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIleP 217326 : GTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCT : 217385 89 : hePheAlaMetThrLeuIleLysTyrTyrPheLeuThrPheHisGluGluAsnIleAr : 107 ||! !!.!|||.!!!!!:!!|||||||||! !|||! ! !!|||:!!! !:!!||||| heCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleAr 217386 : TCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCG : 217442 108 : gLysGlyIleGluHisIleGluTrpAspTrpLysAsnValLysHisGluGluAspLys : 126 |:!! !!:!:..!...|||||| !!||||||!:!||||||!:! !|||:!!|||!:! gGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArg 217443 : CGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGG : 217499 127 : ArgIleMetIleGluTyrAlaAsnTyrGlyLysLysLeuAlaLeuIleSerIlePheP : 146 ..! ||||||! ! !!||||||!:!|||:::||||||!.!|||:!!!!!! !|||| GluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPheP 217500 : GAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCT : 217559 147 : heValTyrSerAlaPheValPheTyrTyrPheValValProIleSerValGlyLysIl : 165 ||:!!||||||...|||||||||||||||..!!.!:!!|||||||||||||||!:!|| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIl 217560 : TCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAAT : 217616 166 : eArgAspGlu<-><->AsnLeuThrPheIleProLeuProPheProSerSerLysLeu : 182 |! !...||| ||||||||||||||||||||| !||||||! !!!!|||! ! eLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyr 217617 : TCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTAT : 217673 183 : IleAlaAspMetArgGlnSerProAlaAsnGluIleLeuPheSerValGlnValLeuS : 202 ||| !|||! ||| ! !!!|||.!!|||||||||:!!|||! !:!!|||:!!:!!: IleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleA 217674 : ATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCG : 217733 203 : erGlyValIleIleHisAlaIleThrAlaThrAlaValSerIleAlaAlaValPheAl : 221 !!|||!.!:!:!!:|||!.!||||||:!!.!!||| !|||:!:||||||!.!||||| laGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAl 217734 : CTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGC : 217790 222 : aValHisAlaCysGlyGlnMetGlnMetLeuMetAsnTrpLeuGluCysLeuValAsp : 240 |||||||||||||||||||!!::!!:!!|||||||||||||||:!! !|||:!!||| aValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAsp 217791 : GGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGAC : 217847 241 : GlyArgSerAspMetAsnLysIleValAspLysArgIleAlaLysIleValValGlnH : 260 ||||||:!!||||||!:! ! ! !|||||| |||||||||!..|||||| !|||| GlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnH 217848 : GGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAAC : 217907 261 : isAspArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheLeuAl : 268 ||! !|||||||||{||} 1229 bp {|}||||||.! isValArgIleLeu{Ly}++ ++{s}PheLeuTh 217908 : ACGTTCGGATATTA{AA}gt.........................ag{a}tttttgaC : 219160 269 : aLeuThrGluArgAlaLeuGlnGlnIleSerPheValGluPheLeuGlyCysThrMet : 287 !||||||||||||.!!||||||||||||||||||!.!||||||||||||||||||||| rLeuThrGluArgThrLeuGlnGlnIleSerPheAlaGluPheLeuGlyCysThrMet 219161 : GCTCACAGAGAGAACCCTCCAGCAAATCTCTTTCGCTGAATTTCTAGGATGCACCATG : 219217 288 : AsnMetCysLeuLeuGlyTyrTyrLeuIleVal >>>> Target Intron 2 >> : 299 :!!!!:||||||:!!|||||||||:!!|||||| 76 bp AspIleCysLeuValGlyTyrTyrIleIleVal++ 219218 : GACATATGTCTCGTTGGATATTACATTATCGTGgt....................... : 219255 300 : >> GluTrpAsnProLysGluIleSerLeuSerLeuThrTyrIleSerLeuLeuIle : 316 ||||||!!. !!!!.!!::!!!!! !:!!:!!|||||||||! !||||||||| ++GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIle 219256 : ..agGAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATA : 219380 317 : SerPheThrPheAsnIlePheIlePheCysTyrIleGlyAspLeuValAlaGluGln : 336 |||.!.|||||||||||||||||||||||||||||||||!!::!!|||||||||||| SerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln+ 219381 : TCCCTcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAgg : 219440 337 : >>>> Target Intron 3 >>>> CysGlnLysValGlyGluMetThrTyrMet : 345 73 bp |||:::|||:::|||||||||:!!|||||| + ++CysArgLysIleGlyGluMetSerTyrMet 219441 : t.........................agTGtaggaaaattggagaaatgtCGTACATG : 219540 346 : IleGluTrpTyrArgLeuThrGlyLysLysLysLeuCysCysValLeuIleIleAlaM : 365 ||||||||||||||||||||||||||||||||||||!! !!||||||! !||||||| IleGluTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaM 219541 : ATCGAATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTA : 219600 366 : etSerAsnSerSerIleLysPheThrAlaGlyAsnMetValGluLeuSerIleTyrTh : 384 ||||||||||||||||||||!!.|||||||||||||||||||||||||||||| !|| etSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerTh 219601 : TGTCGAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCAC : 219657 385 : rPheSerAsp >>>> Target Intron 4 >>>> ValValLysThrSerValA : 394 ||||!!!||| 87 bp ||||||||||||:!!|||. rPheThrAsp++ ++ValValLysThrAlaValT 219658 : TTTTACCGACgt.........................agGTCGTTAAGACTGCAGTCA : 219774 395 : laPheLeuAsnMetLeuArgAlaLeuThr : 403 !!|||||||||:!:||||||.!!|||||| hrPheLeuAsnValLeuArgThrLeuThr 219775 : CGTTTCTGAATGTACTACGAACATTGACT : 219803 vulgar: AmOr30 11 403 . KQ414889.1 217153 219803 + 1184 M 27 81 G 0 3 M 130 390 G 0 6 M 96 288 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 37 111 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 83 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217154 219803 1184 + . gene_id 2 ; sequence AmOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217154 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217154 217923 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219668 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219668 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219669 219670 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219669 219755 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 219754 219755 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219756 219803 . + . KQ414889.1 exonerate:protein2genome:local exon 219756 219803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217154 219803 1184 + . alignment_id 2 ; Query AmOr30 ; Align 217154 12 81 ; Align 217238 39 390 ; Align 217634 169 288 ; Align 219154 266 99 ; Align 219329 299 111 ; Align 219513 336 156 ; Align 219756 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1105 Query range: 12 -> 403 Target range: 212854 -> 215136 13 : TyrGluArgAsnValAsnLeuSerIleArgTrpAsnArgPheLeuLeuLysSerLeuG : 32 ||||||!:!...||||||||||||||| !|||||||||!::||||||||| !! !| TyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrG 212855 : TACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGG : 212912 33 : lyThrTrpProAsnLeuArg<->GluSerArgIleGlyLysCysTyrSerValLeuIl : 50 || !||||||:!! ! ! ! |||! !|||! !||| ! !:!! !|||:! lyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIleAlaArgLeuVa 212913 : GTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGT : 212969 51 : eGlyIleValCysTyrGlyLeuIleSerPheMetLeuThrSerSerAsnMetPheLeu : 69 !..!! !||||||||||||||||||.!!!:!:!::!!! ! !!!!!!:!:!!!:!:!! lAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrVal 212970 : CAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTG : 213026 70 : ValValGluValLysAspThrTyrAsnArgIleLysMetIleGlyProLeuSerPheP : 89 !!:!!!!:|||:::::: :::......|||:!!:!!.!!||| !!!!:!!|||! PheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheC 213027 : TTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTT : 213086 90 : heAlaMetThrLeuIleLysTyrTyrPheLeuThrPheHisGluGluAsnIleArgLy : 108 !!.! .!!||| ||||||:!!! |||! !.!!|||! !!::!!||||||! ysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgTh 213087 : GCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTAC : 213143 109 : sGlyIleGluHisIleGluTrpAspTrpLysAsnValLysHisGluGluAspLysArg : 127 ! !!:!!||||||!!::!!!::||||||||||||:!!! !|||||||||||||||..! rCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGlu 213144 : GTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAA : 213200 128 : IleMetIleGluTyrAlaAsnTyrGlyLysLysLeuAlaLeuIleSerIlePhePheV : 147 |||||| ! !!|||!:!!:!||||||!:!:!!!.! !|||!!! !||||||: IleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPhePheM 213201 : ATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCA : 213260 148 : alTyrSerAlaPheValPheTyrTyrPheValValProIleSerValGlyLysIle<- : 166 !!|||!!!!.!|||..!||||||!:!.!!|||||||||||||||!.!! !|||!!: etTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLysMetVa 213261 : TGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGT : 213317 167 : ><->ArgAspGluAsnLeuThrPheIleProLeuProPheProSerSerLysLeuIle : 183 ..!||| |||:!!||||||! !! !:!! ! !!||| !|||!:!!!!||| lAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSerArgPheIle 213318 : AGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATC : 213374 184 : AlaAspMetArgGlnSerProAlaAsnGluIleLeuPheSerValGlnValLeuSerG : 203 !.!|||:!:||| ! ||||||!.!|||||||||!!!|||! !:!!|||:!!:!!:!!| ValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleIleAlaG 213375 : GTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTG : 213434 204 : lyValIleIleHisAlaIleThrAlaThrAlaValSerIleAlaAlaValPheAlaVa : 222 |||||:!:||||||||||||.!!!.!..!||| !|||:!:||||||||||||||||| lyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPheAlaVa 213435 : GAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGT : 213491 223 : lHisAlaCysGlyGlnMetGlnMetLeuMetAsnTrpLeuGluCysLeuValAspGly : 241 ||||||||||||||||||| !!:||||||!:!||||||||| !|||:!!|||||| lHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGly 213492 : TCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGT : 213548 242 : ArgSerAspMetAsnLysIleValAspLysArgIleAlaLysIleValValGlnHisA : 261 |||..!||||||!:!|||! !|||||| ! ||||||||| |||||| !||||||! ArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleValAsnGlnHisV 213549 : AGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATG : 213608 262 : spArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheLeuAlaLe : 269 |||||||||{||} 840 bp {|}||||||! !|| alArgIleLeu{Ly}++ ++{s}PheLeuGluLe 213609 : TGCGGATACTG{AA}gt.........................ag{A}TTCTTAGAGCT : 214472 270 : uThrGluArgAlaLeuGlnGlnIleSerPheValGluPheLeuGlyCysThrMetAsn : 288 |..!|||!:!||||||!:!|||:!!||||||!.!|||!!.|||! !||||||:!!||| uValGluLysAlaLeuArgGlnValSerPheAlaGluLeuLeuValCysThrValAsn 214473 : CGTGGAGAAAGCACTTCGGCAAGTATCTTTCGCTGAATTATTAGTATGCACGGTGAAT : 214529 289 : MetCysLeuLeuGlyTyrTyrLeuIleVal >>>> Target Intron 2 >>>> : 299 :!:||||||:!!|||||||||:!!|||..! 68 bp LeuCysLeuValGlyTyrTyrIleIleThr++ + 214530 : CTCTGTCTCGTTGGATATTACATAATAACGgt.........................a : 214628 300 : GluTrpAsnProLysGluIleSerLeuSerLeuThrTyrIleSerLeuLeuIleSer : 317 ||||||||| !!!!..!.:!!!!! !!!!:!!||||||:!: !|||! !|||||| +GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValValLeuTyrIleSer 214629 : ggAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGGTGTTGTATATCTCT : 214684 318 : PheThrPheAsnIlePheIlePheCysTyrIleGlyAspLeuValAlaGluGln >> : 336 ...|||||||||||||||||||||||||||||||||!!:||||||:!!|||||| LeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValSerGluGln++ 214685 : CtcactttcaatattttcatattttgttaCATAGGCGAGCTTGTGTCTGAACAGgt.. : 214743 337 : >> Target Intron 3 >>>> CysGlnLysValGlyGluMetThrTyrMetIle : 346 123 bp |||:!!||||||||||||:!::!!||||||||| ++CysLysLysValGlyGluValSerTyrMetIle 214744 : .......................agTGCAAAAAGGTCGGAGAAGTATCGTACATGATC : 214894 347 : GluTrpTyrArgLeuThrGlyLysLysLysLeuCysCysValLeuIleIleAlaMetS : 366 ||||||||||||||| !!|||!!.|||||||||||||||:!!||||||!!:||||||| GluTrpTyrArgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetS 214895 : GAATGGTACCGATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGT : 214954 367 : erAsnSerSerIleLysPheThrAlaGlyAsnMetValGluLeuSerIleTyrThrPh : 385 |||||||||||:!!|||||||||||||||||||||||||||||||||||| !||||| erAsnSerSerValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPh 214955 : CCAATTCATCCGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTT : 215011 386 : eSerAsp >>>> Target Intron 4 >>>> ValValLysThrSerValAlaP : 395 ||||..! 69 bp ||||||::!||||||||||||| eSerSer++ ++ValValArgThrSerValAlaP 215012 : CAGCAGTgt.........................agGTTGTTCGAACATCGGTTGCCT : 215110 396 : heLeuAsnMetLeuArgAlaLeuThr : 403 |||||||| !||||||......::: heLeuAsnAlaLeuArgThrPheSer 215111 : TCTTAAACGCGTTACgaacattttca : 215136 vulgar: AmOr30 12 403 . KQ414889.1 212854 215136 + 1105 M 26 78 G 0 3 M 127 381 G 0 6 M 99 297 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 M 33 99 5 0 2 I 0 64 3 0 2 M 37 111 5 0 2 I 0 119 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212855 215136 1105 + . gene_id 3 ; sequence AmOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212855 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 212855 213621 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215019 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215019 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 215020 215021 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 215020 215088 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 215087 215088 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 215089 215136 . + . KQ414889.1 exonerate:protein2genome:local exon 215089 215136 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212855 215136 1105 + . alignment_id 3 ; Query AmOr30 ; Align 212855 13 78 ; Align 212936 39 381 ; Align 213323 166 297 ; Align 214463 266 99 ; Align 214630 299 111 ; Align 214864 336 156 ; Align 215089 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 949 Query range: 4 -> 403 Target range: 208170 -> 212081 5 : ArgSerIleIleGlyHisAspAspTyrGluArgAsnValAsnLeuSerIleArgTrpA : 24 |||..!|||.!! !:!! :!!|||:!!!.!:!!:!!!:!!!!!:!:!!||| !| ArgGlnIlePheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuA 208171 : AGACAAATATTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGA : 208228 25 : snArgPheLeuLeuLysSerLeuGlyThrTrpPro<->AsnLeuArgGluSerArgIl : 42 || !!:: !||||||! !:!!|||:!!|||||| ::!:!! !...||| !!:! snValTrpThrLeuLysIleIleGlySerTrpProArgSerIleAspArgSerTrpLe 208229 : ACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTT : 208285 43 : eGlyLysCysTyrSerValLeuIleGlyIleValCysTyrGlyLeuIleSerPheMet : 61 !! !!!. !! ! !:!!|||:!!..!:!!:!! !!:!! !!|||:!!.!!|||!!: uGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIle 208286 : AGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATC : 208342 62 : LeuThrSerSerAsnMetPheLeuValValGluValLysAspThrTyrAsnArgIleL : 81 :!!! ! !!!!!..!|||||| !:!!:!!! !|||:!!||| !|||:!!!:!:!!| ValIleProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuL 208343 : GTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAA : 208402 82 : ysMetIleGlyProLeuSerPhePheAlaMetThrLeuIleLysTyrTyrPheLeuTh : 100 ||!!: !.!! !!|||||||||||| !|||.!!!!!! |||||| .!!:!!|| ysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetTh 208403 : AGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGAC : 208459 101 : rPheHisGluGluAsnIleArgLysGlyIleGluHisIleGluTrpAspTrpLysAsn : 119 | !!!.!|||! :!!||||||||| !!:!!|||:!!:!!||| ||||||!:!||| rValArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsn 208460 : TGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAAC : 208516 120 : ValLysHisGluGluAspLysArgIleMetIleGluTyrAlaAsnTyrGlyLysLysL : 139 |||:!!||||||||||||!:!!:!||||||:!:!!: !!|||!:!!:!!.!!:!|||| ValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysL 208517 : GTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAAC : 208576 140 : euAlaLeuIleSerIlePhePheValTyrSerAlaPheValPheTyrTyrPheValVa : 158 || !:!!|||!!! ! !|||:!!|||.!!!.. :::|||||||||.!!!.!:! euIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLe 208577 : TGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTT : 208633 159 : lProIleSerValGlyLysIleArgAspGlu<-><->AsnLeuThrPheIleProLeu : 175 !|||:!!!!! !! !|||:!! !!!:||| |||||||||!:!! ! !||| uProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeu 208634 : GCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTG : 208690 176 : ProPheProSerSerLysLeuIleAlaAspMetArgGlnSerProAlaAsnGluIleL : 195 !!:!||| ! !!|||!!!||| !|||:!:||| ! ||||||!.!|||||||||! ValTyrProValProLysPheIleLeuAspValArgTyrSerProValAsnGluIleP 208691 : GTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTT : 208750 196 : euPheSerValGlnValLeuSerGlyValIleIleHisAlaIleThrAlaThrAlaVa : 214 !!!:!!!!||||||:!!||||||||| !!:!! !||| !||||||!.! !||| heTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCy 208751 : TTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTG : 208807 215 : lSerIleAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlnMetLeuMetAsn : 233 !.!!:!:||||||:!!.!!|||:!!|||||||||||||||:!!|||!!:||||||::! sGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSer 208808 : CGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCC : 208864 234 : TrpLeuGluCysLeuValAspGlyArgSerAspMetAsnLysIleValAspLysArgI : 253 |||:!!||| |||||||||||||||..!||| !.!.|||! !:!!|||:!!|||: TrpMetGluLysLeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgL 208865 : TGGATGGAGAAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGT : 208924 254 : leAlaLysIleValValGlnHisAspArgIleLeu{Ly} >>>> Target Intro : 265 !:|||!!.||||||! !||||||! !|||:!::!!{!!} 1536 bp euAlaAsnIleValGluGlnHisValArgValIle{As}++ 208925 : TGGCTAATATCGTGGAGCAGCATGTTCGAGTGATC{AA}gt................. : 208964 266 : n 1 >>>> {s}PheLeuAlaLeuThrGluArgAlaLeuGlnGlnIleSerPheVal : 280 {.}|||:!!||||||||||||!.! !|||!!.:!!||||||!!.:!! ++{n}PheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIle 208965 : ........ag{T}TTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATA : 210541 281 : GluPheLeuGlyCysThrMetAsnMetCysLeuLeuGlyTyrTyrLeuIleVal >> : 299 |||.!.:!!|||||||||:!!|||||||||!!!|||||||||||| !!!::!! GluMetValGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210542 : GAAATGGTGGGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt.. : 210600 300 : >> Target Intron 2 >>>> GluTrpAsnProLysGluIleSerLeuSerLeu : 309 66 bp ||||||:!! !!|||!!: !! ! !|||||| ++GluTrpAspSerLysAspProIleSerSerLeu 210601 : .......................agGAATGGGACTCTAAAGACCCTATCAGCAGTCTG : 210694 310 : ThrTyrIleSerLeuLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleG : 329 ||||||||| !||||||! !||| !!||||||||||||||||||||||||||||||| ThrTyrIleValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleG 210695 : ACGTACATAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCG : 210754 330 : lyAspLeuValAlaGluGln >>>> Target Intron 3 >>>> CysGlnLys : 338 ||!!::!!:!!||||||||| 999 bp !||| lyGluValLeuAlaGluGln++ ++ThrValLys 210755 : GTGAAGTGTTGGCTGAACAggt.........................agACAGTAAAA : 211780 339 : ValGlyGluMetThrTyrMetIleGluTrpTyrArgLeuThrGlyLysLysLysLeuC : 358 |||||||||! !:!!|||||||||!!:|||||||||:!! !!||||||||| ||| ValGlyGluLysSerTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuV 211781 : GTTGGAGAAAAGTCTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGG : 211840 359 : ysCysValLeuIleIleAlaMetSerAsnSerSerIleLysPheThrAlaGlyAsnMe : 377 ! !|||!!:|||:!!||||||:!!|||!!!! !|||.!!||||||||||||:! alValProLeuMetIleSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLe 211841 : TCGTACCCTTGATGATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCT : 211897 378 : tValGluLeuSerIleTyrThrPheSerAsp >>>> Target Intron 4 >>>> : 388 ::!!! ||||||||| !!:!|||.!!||| 104 bp uIleValLeuSerIleSerSerPheGlyAsp++ 211898 : CATCGTTCTTTCAATCAGTAGTTTCGGTGACgt......................... : 211932 389 : ValValLysThrSerValAlaPheLeuAsnMetLeuArgAlaLeuThr : 403 |||:!!||||||||||||.!!!:!|||||||||||||||.!!!!!||| ++ValIleLysThrSerValThrTyrLeuAsnMetLeuArgThrPheThr 211933 : agGTTATCAAGACTTCGGTAACATACTTGAACATGCTACGAACATTCACA : 212081 vulgar: AmOr30 4 403 . KQ414889.1 208170 212081 + 949 M 31 93 G 0 3 M 133 399 G 0 6 M 96 288 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 995 3 0 2 M 52 156 5 0 2 I 0 100 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208171 212081 949 + . gene_id 4 ; sequence AmOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208171 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208171 208961 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211929 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 211930 211931 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 211930 212033 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 212032 212033 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 212034 212081 . + . KQ414889.1 exonerate:protein2genome:local exon 212034 212081 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208171 212081 949 + . alignment_id 4 ; Query AmOr30 ; Align 208171 5 93 ; Align 208267 36 399 ; Align 208672 169 288 ; Align 210499 266 99 ; Align 210664 299 111 ; Align 211774 336 156 ; Align 212034 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 726 Query range: 11 -> 267 Target range: 221357 -> 222134 12 : AspTyrGluArgAsnValAsnLeuSerIleArgTrpAsnArgPheLeuLeuLysSerL : 31 ||||||:!!! !||||||!!.||||||:!:!:!! !!:!|||!:::!!|||||| !!: AspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProI 221358 : GATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGA : 221415 32 : euGlyThrTrpProAsnLeuArgGlu<->SerArgIleGlyLysCysTyrSerValLe : 49 !!|||..!|||||||||! ! !.!. |||! !:!!! !!:!! ! !! ! !|| leGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLe 221416 : TCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 50 : uIleGlyIleValCysTyrGlyLeuIleSerPheMetLeuThrSerSerAsnMetPhe : 68 ||||..!:!!|||||||||.!!||||||!!!|||:!:|||..! !!!!!!:!:!:!:! uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 69 : LeuValValGluValLysAspThrTyrAsnArgIleLysMetIleGlyProLeuSerP : 88 :!!:!!:!!||||||:!!|||..!|||||||||||||||:!!:!:||||||||||||| ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 89 : hePheAlaMetThrLeuIleLysTyrTyrPheLeuThrPheHisGluGluAsnIleAr : 107 ||! !!.!|||.!!!!!:!!||||||:!!.!.|||! !.!!:!!|||.!.:!!||||| heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 108 : gLysGlyIleGluHisIleGluTrpAspTrpLysAsnValLysHisGluGluAspLys : 126 |:!! !!||||||!.!|||||||||||||||||||||:!!! :!!...:!!|||||| gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 127 : ArgIleMetIleGluTyrAlaAsnTyrGlyLysLysLeuAlaLeuIleSerIlePheP : 146 !|||||||||||| !!|||! !!:!|||!:!::!||| !:!!|||!!!! !|||| AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 147 : heValTyrSerAlaPheValPheTyrTyrPheValValProIleSerValGlyLysIl : 165 ||:!!||||||...|||||||||||||||...!.!:!!|||.!!|||||||||||||| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 166 : e<-><->ArgAspGluAsnLeuThrPheIleProLeuProPheProSerSerLysLeu : 182 | !:!||| |||:::||||||||||||:!! !||||||! !|||!:!!!! eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 183 : IleAlaAspMetArgGlnSerProAlaAsnGluIleLeuPheSerValGlnValLeuS : 202 |||!.!|||! ||| ! ||||||!.!||||||||||||||||||:!!|||:!!:!!: IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 203 : erGlyValIleIleHisAlaIleThrAlaThrAlaValSerIleAlaAlaValPheAl : 221 !!|||!.!:!:!!:|||::!||||||:!!.!!||| !|||:!:!.!|||:!!||||| laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 222 : aValHisAlaCysGlyGlnMetGlnMetLeuMetAsnTrpLeuGluCysLeuValAsp : 240 |||||||||||||||||||||||||:!!||||||!:!||||||:!! !|||:!!:!! aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 241 : GlyArgSerAspMetAsnLysIleValAspLysArgIleAlaLysIleValValGlnH : 260 ||||||:!!|||||| !!!.! !||||||!:!|||||||||||||||||| !|||| GlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnH 222052 : GGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAAC : 222111 261 : isAspArgIleLeuLysPheLeu : 267 ||! !|||||||||:!!!:!:!! isValArgIleLeuGlnTyrVal 222112 : ACGTTCGAATATTGCAGTATGTA : 222134 vulgar: AmOr30 11 267 . KQ414889.1 221357 222134 + 726 M 28 84 G 0 3 M 126 378 G 0 6 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221358 222134 726 + . gene_id 5 ; sequence AmOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221358 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221358 222134 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221358 222134 726 + . alignment_id 5 ; Query AmOr30 ; Align 221358 12 84 ; Align 221445 40 378 ; Align 221829 166 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 411 Query range: 3 -> 298 Target range: 259727 -> 260881 4 : AsnArgSerIleIleGlyHisAspAspTyrGluArgAsnValAsnLeuSerIleArgT : 23 |||!:!|||:!:.!!! !.!. ..!!:! !!!:!! !:!!! !|||:!!!:!! AsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerLeuGlnP 259728 : AACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCCAAT : 259785 24 : rpAsnArgPheLeuLeuLysSerLeuGlyThrTrp<->ProAsnLeuArgGluSerAr : 41 ::||||||!::!!!|||||| !!:!!|||.!!||| |||:::! ! ! !!!!|| heAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerThrThrAr 259786 : TTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCACGACCAG : 259842 42 : gIleGlyLysCysTyrSerValLeuIleGlyIleValCysTyrGlyLeuIleSerPhe : 60 |:!!! !||| ! !||||||:!!:!: !.!!:!!||||||.!! !||| ! !! gLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIleLeuVal 259843 : ACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATACTGGTC : 259899 61 : MetLeuThrSerSerAsnMetPheLeuValValGluValLysAspThrTyrAsnArgI : 80 ! |||! ! !!!!! :!: !:!!:!!:!!||| !:!!..! !|||! !:!! ThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrMetLysT 259900 : ACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAA : 259959 81 : leLysMetIleGlyProLeuSerPhePheAlaMetThrLeuIleLysTyrTyrPheLe : 99 |||:!!:!!|||||||||!!! !!:: !:!: !! !|||!!.||| || hrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrThrThrLe 259960 : CGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTT : 260016 100 : uThrPheHisGluGluAsnIleArgLysGlyIleGluHisIleGluTrpAspTrpLys : 118 | !!!....! ..!:!!|||! !!.. !!:!:||||||:!:||| ||||||!:! uLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAspTrpArg 260017 : GTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGA : 260073 119 : AsnValLysHisGluGluAspLysArgIleMetIleGluTyrAlaAsnTyrGlyLysL : 138 ! !:!!! !...|||:!!|||:!!!.!:!:|||:!:..!||||||!!.!:!|||!:! IleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgT 260074 : ATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGAT : 260133 139 : ysLeuAlaLeuIleSerIlePhePheValTyrSerAlaPheValPheTyrTyrPheVa : 157 ! :!!||| ! !!!! !|||||| ! .!!!.! !!:!!! !!:!! !!!.|| yrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCysLeuVa 260134 : ACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGT : 260190 158 : lValProIleSerValGlyLysIleArgAspGluAsnLeuThrPheIlePro<-><-> : 175 |..! !:!:|||..!! ! !|||!:!! ! !||| !||| ||| ! lThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleValHisLeu 260191 : CACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTG : 260247 176 : LeuProPheProSerSerLysLeuIleAlaAspMetArgGlnSerProAlaAsnGluI : 194 ||||||! ! !! !! !||| !:!: !:!!:!!!.!.!.|||||| !||||||| LeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetAsnGluI 260248 : TTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGA : 260307 195 : leLeuPheSerValGlnValLeuSerGlyValIleIleHisAlaIleThrAlaThrAl : 213 ||:!!.!! !|||||| !!:!!|||||| !!|||:!::!!:!!! !|||!.! ! leValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrValGlyIl 260308 : TTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAAT : 260364 214 : aValSerIleAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlnMetLeuMet : 232 ! !!|||:!!|||||||||.!..!!!.!|||||||||||||||:!!.!.:!!|||||| ePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMet 260365 : CTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATG : 260421 233 : AsnTrpLeuGluCysLeuValAsp<->GlyArgSerAspMetAsnLysIleValAspL : 251 .!.|||:!! ! !!!|||||| ..!|||!:! ! !!!.||| ! ! !| GluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaProPheL 260422 : GAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTCCTTTCA : 260481 252 : ysArgIleAlaLysIleValValGlnHisAspArgIleLeu{Ly} >>>> Target : 265 ||..!|||!.! !||||||! !!!.||| ||| !|||{! } 2 ysGluIleGlyValIleValGluHisHisLeuArgAlaLeu{Th}++ 260482 : AGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC{AC}gt........... : 260527 266 : Intron 1 >>>> {s}PheLeuAlaLeuThrGluArgAlaLeuGlnGlnIleSer : 278 57 bp { }|||:!!:!!! !! !||| !!.!:!!.!.!:!|||!!! ++{r}PheIleSerArgIleGluAspValMetAsnArgIleCys 260528 : ..............ag{C}TTCATATCGCGTATCGAGGATGTGATGAACCGGATATGC : 260819 279 : PheValGluPheLeuGlyCysThrMetAsnMetCysLeuLeuGlyTyrTyrLeuIleV : 298 |||:!!|||!!.!!! !!||||||:!!:!!!!:||||||||||||||||||:!!:!!: PheLeuGluLeuPheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeuM 260820 : TTCCTGGAGTTGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATATTCTTA : 260879 299 : al : 298 !! et 260880 : TG : 260881 vulgar: AmOr30 3 298 . KQ414889.1 259727 260881 + 411 M 31 93 G 0 3 M 140 420 G 0 6 M 66 198 G 0 3 M 24 72 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259728 260881 411 + . gene_id 6 ; sequence AmOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259728 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259728 260524 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259728 260881 411 + . alignment_id 6 ; Query AmOr30 ; Align 259728 4 93 ; Align 259824 35 420 ; Align 260250 175 198 ; Align 260451 241 72 ; Align 260783 266 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 392 Query range: 17 -> 297 Target range: 262846 -> 263770 18 : AsnLeuSerIleArgTrpAsnArgPheLeuLeuLysSerLeuGlyThrTrpPro<->A : 36 :!!! !|||:!:!:! ||||||!::||||||||| !!:!!|||.!!|||||| : AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 37 : snLeuArgGluSerArgIleGlyLysCysTyrSerValLeuIleGlyIleValCysTy : 55 :! ! ! ||||||!!:! !::! ! !!!! !!|||:!! !:!!|||||||| erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 56 : rGlyLeuIleSerPheMetLeuThrSerSerAsnMetPheLeuValValGluValLys : 74 | !!|||||| !! !! :!!! ! !!|||! :!: !:!!|||:!!|||!.!:!! rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 75 : AspThrTyrAsnArgIleLysMetIleGlyProLeuSerPhePheAlaMetThrLeuI : 94 :!! !:!!! !:!:!::!!:!::!!|||||||||.!! !:: !:!: !:!!| AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 95 : leLysTyrTyrPheLeuThrPheHisGluGluAsnIleArgLysGlyIleGluHisIl : 113 ||!!.||| !!::||| !.!!|||...:!!:!!|||!:! !!:!::!!|||:! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 114 : eGluTrpAspTrpLysAsnValLysHisGluGluAspLysArgIleMetIleGluTyr : 132 ::!! |||||| ! !|||! ... !||||||:!!|||||||||:!::!! !! lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 133 : AlaAsnTyrGlyLysLysLeuAlaLeuIleSerIlePhePheValTyrSerAlaPheV : 152 |||!!.||||||::: ! :!!||| ! !!!! .!!|||:!! ! !!!::!.!!: AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 153 : alPheTyrTyrPheValValProIleSerValGlyLysIleArgAspGluAsnLeuTh : 171 !!! ! ! ! !.!.|||..! !!.!!!!!..! ! !|||..!|||! ||| !|| etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 172 : rPheIle<-><->ProLeuProPheProSerSerLysLeuIleAlaAspMetArgGln : 188 | ||| !||||||! !||| !! !||| !||| ! :!: ! ! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 189 : SerProAlaAsnGluIleLeuPheSerValGlnValLeuSerGlyValIleIleHisA : 208 !:!|||.!!|||||||||!!!.!!:!!..!||| !!||||||||| !!|||:!! !| AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 209 : laIleThrAlaThrAlaValSerIleAlaAlaValPheAlaValHisAlaCysGlyGl : 227 ||! !|||!.! !||| !!.!!!!:.!!||||||||||||! !|||||||||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 228 : nMetGlnMetLeuMetAsnTrpLeuGluCysLeuValAspGlyArgSerAspMetAsn : 246 |:!!.!.:!!||||||::!|||:!! ! !!!|||:!! ! !!!!||| !||| nLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsn 263484 : GTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAAT : 263540 247 : Lys<->IleValAspLysArgIleAlaLysIleValValGlnHisAspArgIleLeu{ : 265 ||| :!! ! !! ..!|||!.! !||||||! !!!.||| |||:!!|||{ LysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeu{ 263541 : AAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTG{ : 263600 266 : Ly} >>>> Target Intron 1 >>>> {s}PheLeuAlaLeuThrGluArgAl : 273 !.} 72 bp {.}|||:!!! !! !! !:!!!.!!. Se}++ ++{r}PheIleAspArgIleLysAsnVa 263601 : AG}gt.........................ag{T}TTCATAGATCGTATTAAGAATGT : 263696 274 : aLeuGlnGlnIleSerPheValGluPheLeuGlyCysThrMetAsnMetCysLeuLeu : 292 !:!!... !|||!!!|||||||||!!.!!! !..!|||:!!:!!!!:|||:!!||| lMetSerThrIleCysPheValGluLeuPheLysAlaThrLeuAspIleCysMetLeu 263697 : GATGAGTACGATATGTTTCGTGGAGTTATTCAAGGCTACGCTGGATATATGCATGCTA : 263753 293 : GlyTyrTyrLeuIle : 297 |||||||||:!!:!! GlyTyrTyrIleLeu 263754 : GGTTACTACATACTT : 263770 vulgar: AmOr30 17 297 . KQ414889.1 262846 263770 + 392 M 18 54 G 0 3 M 138 414 G 0 6 M 74 222 G 0 3 M 17 51 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 263770 392 + . gene_id 7 ; sequence AmOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262847 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263601 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 263673 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263672 263673 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 263674 263770 . + . KQ414889.1 exonerate:protein2genome:local exon 263674 263770 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262847 263770 392 + . alignment_id 7 ; Query AmOr30 ; Align 262847 18 54 ; Align 262904 36 414 ; Align 263324 174 222 ; Align 263549 248 51 ; Align 263675 266 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 382 Query range: 3 -> 301 Target range: 256607 -> 257589 4 : AsnArgSerIleIleGlyHisAspAspTyrGluArgAsnValAsnLeuSerIleArgT : 23 |||..!! ! !:!:! ! ! :!!!:!:!!!!! !! !:!!! !|||:!!!:!! AsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerLeuGlnL 256608 : AACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTCTCCAGT : 256665 24 : rpAsnArgPheLeuLeuLysSerLeuGlyThrTrp<->ProAsnLeuArgGluSerAr : 41 !||||||!::!!!|||||| !!:!!|||.!!||| |||:::! ! ! !!!! euAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerThrThrTh 256666 : TGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCACTACAAC : 256722 42 : gIleGlyLysCysTyrSerValLeuIleGlyIleValCysTyrGlyLeuIleSerPhe : 60 !:!!! !::! ! !|||:!!:!!:!:..!|||||||||||||||! !|||! !||| rLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIleLeuPhe 256723 : CCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTC : 256779 61 : MetLeuThrSerSerAsnMetPheLeuValValGluValLysAspThrTyrAsnArgI : 80 ! |||! ! !!!!! :!: !:!! !!:!!!!:! ! ! ..! !||| :::: ThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrMetLysV 256780 : ACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAcatgaaag : 256839 81 : leLysMetIleGlyProLeuSerPhePheAlaMetThrLeuIleLysTyrTyrPheLe : 99 ::||| ...||||||:!!||| !!:: !!!:!:!! ! !!!.||| !!.|| alLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrThrLeuLe 256840 : tgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACACGTTGCT : 256896 100 : uThrPheHisGluGluAsnIleArgLysGlyIleGluHisIleGluTrpAspTrpLys : 118 | !!!.!!.! !:!!:!!|||||| ! !!:!!|||||||||||| !||||||!:! uLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAspTrpArg 256897 : GTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGA : 256953 119 : AsnValLysHisGluGluAspLysArgIleMetIleGluTyrAlaAsnTyrGlyLysL : 138 ! |||!:!...|||:!!|||:!!!:!:!:|||!!::!! !!|||!..!:!|||::: MetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheGlyArgT 256954 : ATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTT : 257013 139 : ysLeuAlaLeuIleSerIlePhePheValTyrSerAlaPheValPheTyrTyrPheVa : 157 ! :!!||| !.!!!!! ! !.!!:!! ! |||!.! :::::: yrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePheValSe 257014 : ACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttcttcgtGTC : 257070 158 : lValProIleSerValGlyLysIleArgAspGluAsnLeuThrPheIle<-><->Pro : 174 ! ! !!:!:!:!..!! !! !|||!.!! ! !||| !||| ||| ! rSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleValArgVal 257071 : GTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTGCGAGTG : 257127 175 : LeuProPheProSerSerLysLeuIleAlaAspMetArgGlnSerProAlaAsnGluI : 194 |||||| !! !! !! !||| !:!: !:!!:!: !|||||||||.!!||||||| LeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrAsnGluI 257128 : CTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGA : 257187 195 : leLeuPheSerValGlnValLeuSerGlyValIleIleHisAlaIleThrAlaThrAl : 213 ||:!! !!! !:!!|||..!! !|||..!:!!||| !.!!! !|||!.!!:! leValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrValSerIl 257188 : TCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAGTAT : 257244 214 : aValSerIleAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlnMetLeuMet : 232 ! !!|||:!!|||||||||||||||..!||||||! !||||||:!! :!!|||||| ePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrValLeuMet 257245 : ATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATG : 257301 233 : AsnTrpLeu<->GluCysLeuValAspGlyArgSerAspMetAsnLysIleValAspL : 251 :::|||:!! |||! !:!! !!!:..!|||!:! ... ... !| SerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheProPheL 257302 : TCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttcctttCA : 257361 252 : ysArgIleAlaLysIleValValGlnHisAspArgIleLeu{Ly} >>>> Target : 265 ||!:!|||!.! !||||||! !!!.||| |||:!:|||{!.} 7 ysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Se}++ 257362 : AGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt........... : 257407 266 : Intron 1 >>>> {s}PheLeuAlaLeuThrGluArgAlaLeuGlnGlnIleSer : 278 6 bp {.}|||:!!:!!! !! !|||..!!.!:!!.!.!:!|||!!! ++{r}PheIleSerTyrIleGluGluValMetAsnArgIleCys 257408 : ..............ag{T}TTCATATCATATATCGAGGAAGTGATGAACCGAATATGT : 257518 279 : PheValGluPheLeuGlyCysThrMetAsnMetCysLeuLeuGlyTyrTyrLeuIleV : 298 |||:!!|||!!.!!! !!||||||:!! !!!:|||:!!||||||||||||:!!:!!! PheLeuGluLeuPheArgCysThrLeuAlaIleCysMetLeuGlyTyrTyrIleLeuA 257519 : TTTTTAGAGTTGTTTAGATGCACGCTGGCTATATGCATGCTGGGATACTACATTCTTG : 257578 299 : alGluTrpAsn : 301 .!! ! ! ||| laValArgAsn 257579 : CGGTACGTAAT : 257589 vulgar: AmOr30 3 301 . KQ414889.1 256607 257589 + 382 M 31 93 G 0 3 M 139 417 G 0 6 M 62 186 G 0 3 M 29 87 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256608 257589 382 + . gene_id 8 ; sequence AmOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256608 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256608 257404 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257589 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257589 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256608 257589 382 + . alignment_id 8 ; Query AmOr30 ; Align 256608 4 93 ; Align 256704 35 417 ; Align 257127 174 186 ; Align 257316 236 87 ; Align 257482 266 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 364 Query range: 0 -> 297 Target range: 274329 -> 275306 1 : MetGluLysAsnArgSerIleIleGlyHisAspAspTyrGluArgAsnValAsnLeuS : 20 ||| !!!.||| !!:!!|||! !! ! !! :!!!:!!!:!!! ! !:!!! !| MetThrAsnAsnCysAlaIleAsnValThrAlaAsnPheAspSerLeuSerAspTyrS 274330 : ATGACAAACAACTGTGCGATAAACGTAACTGCGAATTTCGACAGTCTCAGCGACTACA : 274387 21 : erIleArgTrpAsnArgPheLeuLeuLysSerLeuGlyThrTrpProAsnLeuArg<- : 39 ||:!:!:!! !||||||!::!!!|||||| !!:!!|||.!!|||||| ! ! erLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaSerPr 274388 : GCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCC : 274444 40 : >GluSerArgIleGlyLysCysTyrSerValLeuIleGlyIleValCysTyrGlyLeu : 57 !!!!:!.!!! !::! ! !||| !|||::: ...:::|||||| !!!!! oThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCysPhe 274445 : CACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTGCTTC : 274501 58 : IleSerPheMetLeuThrSerSerAsnMetPheLeuValValGluValLysAspThrT : 77 ||| !! !! :!!! ! !!|||! .!. !:!!:!!:!!! !! !:!!..! !: IleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGluSerLeuH 274502 : ATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGTCTCC : 274561 78 : yrAsnArgIleLysMetIleGlyProLeuSerPhePheAlaMetThrLeuIleLysTy : 96 !! !:!:!:|||:!!:!!|||||||||.!! !!:: !!!: ! !|||!!.|| isLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTy 274562 : ATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTA : 274618 97 : rTyrPheLeuThrPheHisGluGluAsnIleArgLysGlyIleGluHisIleGluTrp : 115 | ! ||| !.!.!.!...:!!.!.|||||| !!:!:||||||!!::!! rThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThr 274619 : CACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACA : 274675 116 : AspTrpLysAsnValLysHisGluGluAspLysArgIleMetIleGluTyrAlaAsnT : 135 ||||||!:!! !|||! ... !||||||:!!!:!:!:|||:!::!! !!|||!!. AspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsnAlaLysI 274676 : GATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGA : 274735 136 : yrGlyLysLysLeuAlaLeuIleSerIlePhePheValTyrSerAlaPheValPheTy : 154 !|||::: ! :!!|||:!!.!!!!! |||:!! ! !!!!.! !!:!!! !|| leGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuCysTy 274736 : TCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTA : 274792 155 : rTyrPheValValProIleSerValGlyLysIleArg<-><->AspGluAsnLeuThr : 171 |! ! ! :!!..! !!.!!!!!:!! !! :!!!:! :!!|||!.! !||| rCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrArgThr 274793 : TTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACC : 274849 172 : PheIleProLeuProPheProSerSerLysLeuIleAlaAspMetArgGlnSerProA : 191 ! ! !||||||! ! !:!!! !||| !|||!.!! :!! ! !||||||. ValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThrSerProT 274850 : GTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGA : 274909 192 : laAsnGluIleLeuPheSerValGlnValLeuSerGlyValIleIleHisAlaIleTh : 210 !!|||||||||:!!.!!:!! !||| !!:!!|||||| !!|||:!::!!:!!! !.! hrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerSerAl 274910 : CGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGC : 274966 211 : rAlaThrAlaValSerIleAlaAlaValPheAlaValHisAlaCysGlyGlnMetGln : 229 !!.! !||| !!|||:!!|||||||||||||||!.!||||||! !||||||:!!... aValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSer 274967 : GGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGC : 275023 230 : MetLeuMetAsnTrpLeuGluCysLeuValAspGlyArgSerAspMetAsnLys<->I : 248 :!!||||||! |||:!! !!!|||:!! ! !!!!|||...|||||| : ValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsnLysAsnV 275024 : GTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaaaatg : 275083 249 : leValAspLysArgIleAlaLysIleValValGlnHisAspArgIleLeu{Ly} >> : 265 :: .....!|||!.! !:!!|||! !!!.||| |||:!!|||{!.} alTyrPheSerGluIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 275084 : tttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTC{AG}gt.. : 275138 266 : >> Target Intron 1 >>>> {s}PheLeuAlaLeuThrGluArgAlaLeuGln : 275 74 bp {.}|||:!!|||! !! !||| !!.!:!!.!. ++{r}PheIleAlaArgIleGluAspValMetAsn 275139 : .......................ag{T}TTCATAGCACGTATCGAGGATGTGATGAAT : 275238 276 : GlnIleSerPheValGluPheLeuGlyCysThrMetAsnMetCysLeuLeuGlyTyrT : 295 !:!|||!!!|||:!!|||!!.!!! !||||||:!!:!!||||||:!!|||||||||| ArgIleCysPheMetGluLeuPheLysCysThrLeuAspMetCysMetLeuGlyTyrT 275239 : CGAATATGCTTCATGGAATTGTTCAAGTGTACTCTGGATATGTGCATGCTTGGCTATT : 275298 296 : yrLeuIle : 297 ||:!!:!! yrIleLeu 275299 : ACATTCTC : 275306 vulgar: AmOr30 0 297 . KQ414889.1 274329 275306 + 364 M 38 114 G 0 3 M 128 384 G 0 6 M 81 243 G 0 3 M 17 51 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274330 275306 364 + . gene_id 9 ; sequence AmOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274330 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274330 275135 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274330 275306 364 + . alignment_id 9 ; Query AmOr30 ; Align 274330 1 114 ; Align 274447 39 384 ; Align 274837 167 243 ; Align 275083 248 51 ; Align 275211 266 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 358 Query range: 11 -> 265 Target range: 303175 -> 304869 12 : AspTyrGluArgAsnValAsnLeuSerIleArgTrpAsnArgPheLeuLeuLysSerL : 31 :!!|||:!!!:!:!!:!! !! ! !! !!:! !:!!:!!:::!!|||||||||| AsnTyrLysLysAspIleValTyrValThrLysHisSerLysTrpIleLeuLysSerL 303176 : AATTACAAGAAAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCC : 303233 32 : euGlyThrTrpProAsnLeuArgGluSerArgIleGlyLysCysTyrSerValLeuIl : 50 |||||! !|||||| !:!! !!!:..!! ! !||| !.!:!! !|| euGlyIleTrpProAlaValLeuAspGluThrAlaGlyPheLeuProLysIleThrIl 303234 : TTGGTATTTGGCCAGCCGTGTTGGACGAAACCGCAGGATTCCTACCAAAAATCACCAT : 303290 51 : eGlyIleValCysTyrGlyLeuIleSerPheMetLeuThrSerSerAsnMetPheLeu : 69 ||||:!! ! !! ! !|||:!! |||! :!!! ! !!!!!! !:!: !:!! eGlyLeuSerAsnLeuValLeuLeu---PheThrValIleProCysIleLeuHisIle 303291 : TGGACTCAGTAATTTGGTTCTATTA---TTCACCGTGATACCGTGTATTCTACACATA : 303344 70 : ValValGluValLysAspThrTyrAsnArgIleLysMetIleGlyProLeuSerPheP : 89 :!! !!||| !||||||||| ! |||:!:|||:!:.!!|||! !|||||||||! IlePheGluGlnLysAspThrIleIleArgLeuLysLeuPheGlyLeuLeuSerPheC 303345 : ATATTCGAACAAAAGGATACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCT : 303404 90 : heAlaMetThrLeuIleLysTyrTyrPheLeuThrPheHisGluGluAsnIleArgLy : 108 ! !!!::!!|||!!:||||||!:: !|||.!! !..:!! !!..|||!:!:! ysLeuIleSerLeuMetLysTyrTrpAlaLeuAlaThrArgLysProArgIleLysGl 303405 : GTTTGATCTCGTTGATGAAGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGA : 303461 109 : sGlyIleGluHisIleGluTrpAspTrpLysAsn >>>> Target Intron 1 > : 120 ! !!||||||.!.:!::!! ! |||||||||.!. 938 bp uCysIleGluGluValGlnSerAspTrpLysGlu++ 303462 : ATGTATAGAAGAGGTGCAAAGTGATTGGAAAGAGgt...................... : 303499 121 : >>> ValLysHisGluGluAspLysArgIleMetIleGluTyrAlaAsnTyrGlyLy : 137 |||:!! ! ..!|||:::..!!!:|||:!!:!!|||!.!.!. |||:: ++ValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyAr 303500 : ...agGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCG : 304486 138 : sLysLeuAlaLeuIleSerIlePhePheValTyrSerAlaPheValPheTyrTyrPhe : 156 !!!.|||.!!:!!|||!!! !.!.|||:!!|||!!!!.! !..!.!!|||:!! gAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThr 304487 : AAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCACACG : 304543 157 : ValValProIleSerValGlyLysIleArgAspGlu<->AsnLeuThrPheIleProL : 175 |||:!!! !.!!:!!..!|||! ! ! !|||||| |||! !|||.!!! !|||| ValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgThrIleLysProL 304544 : GTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAACCGC : 304603 176 : euProPheProSerSerLysLeuIleAlaAspMetArgGlnSerProAlaAsnGluIl : 194 || !!:!|||!!!! !!.. !:!! !|||:!:!:! !|||||| ! !!|||:! euValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLe 304604 : TCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATT : 304660 195 : eLeuPheSerValGlnValLeuSerGlyValIleIleHisAlaIleThrAlaThrAla : 213 ::!!!:!! !|||!!. !:!!!!!||| !:!!|||:!!:!!||||||||| !||| uValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAla 304661 : GGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCT : 304717 214 : ValSerIleAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlnMetLeuMetA : 233 !.!!:!!||||||:!!||||||..!|||||||||||||||!!:.!.!!::!!|||: CysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetS 304718 : TGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGT : 304777 234 : snTrpLeuGluCysLeuValAspGlyArgSerAspMetAsnLysIleValAspLysAr : 252 :! ! |||! !||||||:!!.!!!:!..!... :!! :!!|||||||| erArgLeuGlyAspLeuValAsnSerLysGluSerSerAsp------LeuAspLysAr 304778 : CTCGATTGGGTGATCTTGTCAACAGCAAAGAATCATCTGAT------TTAGATAAACG : 304828 253 : gIleAlaLysIleValValGlnHisAspArgIleLeuLys : 265 |:!! !:!!||||||! !!!.||| |||||||||!:! gLeuIleGluIleValGluHisHisLeuArgIleLeuArg 304829 : ATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTAAGG : 304869 vulgar: AmOr30 11 265 . KQ414889.1 303175 304869 + 358 M 47 141 G 1 0 M 60 180 5 0 2 I 0 934 3 0 2 M 49 147 G 0 3 M 78 234 G 2 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303176 304869 358 + . gene_id 10 ; sequence AmOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303176 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303176 303496 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304869 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304869 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 303176 304869 358 + . alignment_id 10 ; Query AmOr30 ; Align 303176 12 141 ; Align 303317 60 180 ; Align 304435 120 147 ; Align 304585 169 234 ; Align 304819 249 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 349 Query range: 262 -> 398 Target range: 286690 -> 287252 263 : IleLeuLysPheLeuAlaLeuThrGluArgAlaLeuGlnGlnIleSerPheValGluP : 282 |||!!!!..|||:!!:!!! !! !||| !! !|||.!.:!!|||!!!||||||||| IlePheSerPheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluV 286691 : ATTTTCAGTTTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGG : 286748 283 : heLeuGlyCysThrMetAsnMetCysLeuLeuGlyTyrTyrLeuIleVal >>>> T : 299 ! :!!|||||||||:!!|||!!:|||!!!|||||||||||||||:!:..! alIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeuThr++ 286749 : TGATTGGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTACTGACGgt...... : 286801 300 : arget Intron 1 >>>> GluTrpAsnProLysGluIleSerLeuSerLeuThrT : 311 80 bp ||||||.!.! !!..|||! !! ! !!!!:!!|||| ++GluTrpGluGlnSerGluThrIleGlyThrIleThrT 286802 : ...................agGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGT : 286915 312 : yrIleSerLeuLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGlyAs : 330 || !!!!||||||:!!|||||||||||||||:!!||||||.!!||||||||||||!! yrCysThrLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGl 286916 : ATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGA : 286972 331 : pLeuValAlaGluGln >>>> Target Intron 2 >>>> CysGlnLysValG : 340 ::!!:!!:!!|||||| 74 bp ||| !||||||| uIleLeuSerGluGln++ ++CysLeuLysValG 286973 : AATTCTCTCCGAACaggt.........................agtGCTTAAAAGTCG : 287076 341 : lyGluMetThrTyrMetIleGluTrpTyrArgLeuThrGlyLysLysLysLeuCysCy : 359 || ! ||||||||||||!!:|||||||||||| !!||||||! ! ! ! !!! lyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLe 287077 : GCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTT : 287133 360 : sValLeuIleIleAlaMetSerAsnSerSerIleLysPheThrAlaGlyAsnMetVal : 378 :!!||||||.!!|||:!!||||||||||||||||||!!.|||||||||!!.!!::!! uIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIle 287134 : GATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATC : 287190 379 : GluLeuSerIleTyrThrPheSerAspValValLysThrSerValAlaPheLeuAsnM : 398 !!:||||||:!! !!:!|||!!!..!||| !! ! !!:!:!!:!!!:!! !:!!: AspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisL 287191 : GATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATT : 287250 399 : et : 398 !! eu 287251 : TG : 287252 vulgar: AmOr30 262 398 . KQ414889.1 286690 287252 + 349 M 36 108 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286691 287252 349 + . gene_id 11 ; sequence AmOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286691 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286691 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286691 287252 349 + . alignment_id 11 ; Query AmOr30 ; Align 286691 263 108 ; Align 286879 299 111 ; Align 287064 336 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 342 Query range: 14 -> 269 Target range: 232447 -> 233221 15 : ArgAsnValAsnLeuSerIleArgTrpAsnArgPheLeuLeuLysSerLeuGlyThrT : 34 |||:!! !.!.! !||||||!:! !||||||!::!!!|||! ! !!:!!|||.!!| ArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaT 232448 : CGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCAT : 232505 35 : rpProAsnLeuArgGlu<->SerArgIleGlyLysCysTyrSerValLeuIleGlyIl : 52 |||||..!:!!! !||| |||||| ! !:!! !:!! !|||:!: !!:! rpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLe 232506 : GGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACT : 232562 53 : eValCysTyrGlyLeuIleSerPheMetLeuThrSerSerAsnMetPheLeuValVal : 71 !..!|||:!!..!|||!!:! !! ! !:!!..! !!!!!! !:!!|||:!!:!! !! uThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPhe 232563 : CACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTC : 232619 72 : GluValLysAspThrTyrAsnArgIleLysMetIleGlyProLeuSerPhePheAlaM : 91 |||! !! !..! ! ! .!.|||!!:||| |||||||||:!!||| !||| !| GluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuM 232620 : GAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGA : 232679 92 : etThrLeuIleLysTyrTyrPheLeuThrPheHisGluGluAsnIleArgLysGlyIl : 110 || ! !:!:!!.|||! !! !||| ! ! ! !.!.:!!|||! ! ! !!:! etGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysVa 232680 : TGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGT : 232736 111 : eGluHisIleGluTrpAspTrpLysAsnValLysHisGluGluAspLysArgIleMet : 129 :|||!!.:!::!! !||||||::!||||||||| ! ! !!::: !:!:||| lGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMet 232737 : GGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATG : 232793 130 : IleGluTyrAlaAsnTyrGlyLysLysLeuAlaLeuIleSerIlePhePheValTyrS : 149 :!::!! !!|||!!. !|||:::..!:!!|||! !|||:!! |||! !:!!:!!! LeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisT 232794 : TTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACA : 232853 150 : erAlaPheValPheTyrTyrPheVal<-><->ValProIleSerValGlyLysIleAr : 166 !!!.! !!! !! ! !! ! .!.||| :!!! !!!:|||..! ! ! :!: ! hrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGl 232854 : CCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGG : 232910 167 : gAspGluAsnLeuThrPheIleProLeuProPheProSerSerLysLeuIleAlaAsp : 185 !:!!|||!:!! !:!!.!. !|||||||||! ! !!! !! !! ! !:!: !||| yAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAsp 232911 : GAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGAC : 232967 186 : MetArgGlnSerProAlaAsnGluIleLeuPheSerValGlnValLeuSerGlyValI : 205 ! ||| ||||||.!!|||||||||:!!||| !:!!||| !||||||||| !!| ThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheI 232968 : ACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCA : 233027 206 : leIleHisAlaIleThrAlaThrAlaValSerIleAlaAlaValPheAlaValHisAl : 224 ||:!::!!:!!:!!|||!.! !||| !.!!:!!!.!||||||.!.|||:!!||||| leValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAl 233028 : TCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGC : 233084 225 : aCysGlyGlnMetGlnMetLeuMetAsnTrpLeuGluCysLeuValAspGlyArgSer : 243 ||||||||||:!!.!.:!!:!!|||::: |||!!: !|||||||||!.!!:!.!! aCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGly 233085 : GTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGG : 233141 244 : AspMetAsnLysIleValAspLysArgIleAlaLysIleValValGlnHisAspArgI : 263 .!. !.!.!:!:!!!.!.!.!:!!:!:!!!.! ||||||! !!!.||| |||! GlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgT 233142 : CAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTA : 233201 264 : leLeuLysPheLeuAlaLeu : 269 !|||!:!!:!|||:!!:!! hrLeuArgTyrLeuSerVal 233202 : CATTAAGGTATTTGTCTGTG : 233221 vulgar: AmOr30 14 269 . KQ414889.1 232447 233221 + 342 M 25 75 G 0 3 M 118 354 G 0 6 M 112 336 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232448 233221 342 + . gene_id 12 ; sequence AmOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232448 233221 . + . KQ414889.1 exonerate:protein2genome:local exon 232448 233221 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232448 233221 342 + . alignment_id 12 ; Query AmOr30 ; Align 232448 15 75 ; Align 232526 40 354 ; Align 232886 158 336 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 322 Query range: 3 -> 260 Target range: 266592 -> 267372 4 : AsnArgSerIleIleGlyHisAspAspTyrGluArgAsnValAsnLeuSerIleArgT : 23 |||..!|||:!::!! !.!.! :!! .!.!!! !:!!! !|||:!:!:!! AsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerLeuGlnL 266593 : AACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCCTGCAAT : 266650 24 : rpAsnArgPheLeuLeuLysSerLeuGlyThrTrpProAsnLeuArg<->GluSerAr : 41 !||||||!::!!!|||||| !!:!!|||.!!|||||| ||| ! !|||!: euAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuThrSerLy 266651 : TGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCACATCTAA : 266707 42 : gIleGlyLysCysTyrSerValLeuIleGlyIleValCysTyrGlyLeuIleSerPhe : 60 !:!!! !::! ! !||| ! !:!: !:!!:!!|||||| !!! !||| !||| sLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIleLeuPhe 266708 : ACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATACTGTTC : 266764 61 : MetLeuThrSerSerAsnMetPheLeuValValGluValLysAspThrTyrAsnArgI : 80 ! :!!! ! !!!!! .!. !||||||:!!|||! !:!!..!! ! !!..!:!: ThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgThrLysV 266765 : ACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTACGAAAG : 266824 81 : leLysMetIleGlyProLeuSerPhePheAlaMetThrLeuIleLysTyrTyrPheLe : 99 !:|||:!!.!!|||||||||||| !!:: !:!: ! !|||!!.||| ! || alLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrThrThrLe 266825 : TGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACACCACACT : 266881 100 : uThrPheHisGluGluAsnIleArgLysGlyIleGluHisIleGluTrpAspTrpLys : 118 | !.!.!.!...:!!.!.|||||| !!:!!||||||!!::!! ||||||!:! uLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArg 266882 : GTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGATTGGAGG : 266938 119 : AsnValLysHisGluGluAspLysArgIleMetIleGluTyrAlaAsnTyrGlyLysL : 138 ! !|||! ... !|||||||||!:!:!:|||:!::!! !!|||!.. !|||::: IleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleGlyArgT 266939 : ATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCGGTCGTT : 266998 139 : ysLeuAlaLeuIleSerIlePhePheValTyrSerAlaPheValPheTyrTyrPheVa : 157 ! :!!|||:!!.!!!!! |||:!! ! !!!!.! !!:!! !|||! ! ! :! yrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCysValIl 266999 : ACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGTGAT : 267055 158 : lValProIleSerValGlyLysIleArgAspGluAsnLeuThrPheIlePro<-><-> : 175 !..! !!.!!!!!:!! !! :!:..!! !! ||| !||| ||| ! eThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleValHisLeu 267056 : AACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTACATCTG : 267112 176 : LeuProPheProSerSerLysLeuIleAlaAspMetArgGlnSerProAlaAsnGluI : 194 ||||||! ! !! !! !||| !!!: !! :!: ! ||||||.!!||||||| LeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrAsnGluI 267113 : TTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGAACGAGA : 267172 195 : leLeuPheSerValGlnValLeuSerGlyValIleIleHisAlaIleThrAlaThrAl : 213 ||:!!.!! ! !||| !!:!!|||||| !!|||:!::!!:!!! !..!!.! !|| leValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValValGlyAl 267173 : TTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCGGTGC : 267229 214 : aValSerIleAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlnMetLeuMet : 232 | !!|||:!!|||||||||||||||!.!|||||||||||||||:!!...:!!|||||| aPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerValLeuMet 267230 : TTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTGATG : 267286 233 : AsnTrpLeuGluCysLeuValAspGlyArgSerAspMetAsnLysIleValAspLysA : 252 ! |||:!!:!! !!!|||:!! !! !!!!|||! ||||||! !||| ! MetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValCysPheA 267287 : ATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTTGCTTCG : 267346 253 : rgIleAlaLysIleValValGlnHis : 260 !! ! :!:||||||:!!||| spLysIleGlyValValValGluHis 267347 : ATAAGATTGGCGTGGTCGTTGAACAT : 267372 vulgar: AmOr30 3 260 . KQ414889.1 266592 267372 + 322 M 35 105 G 0 3 M 136 408 G 0 6 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266593 267372 322 + . gene_id 13 ; sequence AmOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266593 267372 . + . KQ414889.1 exonerate:protein2genome:local exon 266593 267372 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266593 267372 322 + . alignment_id 13 ; Query AmOr30 ; Align 266593 4 105 ; Align 266701 39 408 ; Align 267115 175 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 303 Query range: 19 -> 241 Target range: 278579 -> 279263 20 : SerIleArgTrpAsnArgPheLeuLeuLysSerLeuGlyThrTrpPro<->AsnLeuA : 38 |||:!!!:! !||||||!::!!!|||||| !!:!!|||..!|||||| !:!||| SerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuC 278580 : AGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCT : 278637 39 : rgGluSerArgIleGlyLysCysTyrSerValLeuIleGlyIleValCysTyrGlyLe : 57 !!! !!!!! !:!:! !||| ! !||||||:!!:!!!.!:!!:!! !!! ! !|| ysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLe 278638 : GCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCT : 278694 58 : uIleSerPheMetLeuThrSerSerAsnMetPheLeuValValGlu<->ValLysAsp : 75 ||||.!!|||:!:|||..! !!!!! !:!!! ! !|||:!!!!: ..! ||| uIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAsp 278695 : GATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGAT : 278751 76 : ThrTyrAsnArgIleLysMetIleGlyProLeuSerPhePheAlaMetThrLeuIleL : 95 ! !!!..!:!|||||||||||||||||||||||||||! !.!!|||.!! !|||| LeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrIleL 278752 : CTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCA : 278811 96 : ysTyrTyrPheLeuThrPheHisGluGluAsnIleArgLysGlyIleGluHisIleGl : 114 ||||||||.!!|||! !! !.!! ! !!.||| !!||| !!:!:.!. !!|||.. ysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIleAr 278812 : AATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCG : 278868 115 : uTrpAspTrpLys<-><-><->AsnValLysHisGluGluAspLysArgIleMetIle : 130 . !||||||... ::: !:::...||||||::::::...||||||! gThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMetArg 278869 : TACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTGAGG : 278925 131 : GluTyrAlaAsnTyrGlyLysLysLeuAlaLeuIleSerIlePhePheValTyrSerA : 150 !!: !|||!.. !|||::!...||||||:!!.!!||| ! !|||:!!||||||! AspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerG 278926 : GACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCG : 278985 151 : laPheValPheTyrTyrPheValValProIle<->SerValGlyLysIleArgAspGl : 168 .! ||||||||| ! !|||:!!|||:!: :!!||| !!! ! ! ! !!! lyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIleAs 278986 : GCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGA : 279042 169 : uAsnLeuThrPheIleProLeuProPheProSerSerLysLeuIleAlaAspMetArg : 187 :||| !||| ! ! ! !!! ! !!||||||! !! !::: !:!! !||| !||| pAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArg 279043 : CAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCGCGT : 279099 188 : GlnSerProAlaAsnGluIleLeuPheSerValGlnValLeuSerGlyValIleIleH : 207 ||||||:!! !||||||:!! ! !:!!||| !|||:!!!.! !!:!!:!!: ThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValLeuT 279100 : ACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTAT : 279159 208 : isAlaIleThrAlaThrAlaValSerIleAlaAlaValPheAlaValHisAlaCysGl : 226 !!:!!:!!|||!.! !||| !|||:!: !|||||||||!.!:!!|||!.!||||| yrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCysGl 279160 : ACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGG : 279216 227 : yGlnMetGlnMetLeuMetAsnTrpLeuGluCysLeuValAspGly : 241 ||||.!.::!!!:|||:!!!.. !|||!!: |||:!!|||||| yGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGly 279217 : GCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGA : 279263 vulgar: AmOr30 19 241 . KQ414889.1 278579 279263 + 303 M 16 48 G 0 3 M 37 111 G 0 3 M 46 138 G 0 9 M 42 126 G 0 3 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278580 279263 303 + . gene_id 14 ; sequence AmOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278580 279263 . + . KQ414889.1 exonerate:protein2genome:local exon 278580 279263 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278580 279263 303 + . alignment_id 14 ; Query AmOr30 ; Align 278580 20 48 ; Align 278631 36 111 ; Align 278745 73 138 ; Align 278892 119 126 ; Align 279021 161 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 295 Query range: 298 -> 388 Target range: 224323 -> 224658 299 : GluTrpAsnProLysGluIleSerLeuSerLeuThrTyrIleSerLeuLeuIleSerP : 318 ||||||::: ....!.:!!!!! !:!!:!!||||||.!!! !||||||!!:|||. GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 319 : heThrPheAsnIlePheIlePheCysTyrIleGlyAspLeuValAlaGluGlnCysGl : 337 ..|||||||||||||||||||||||||||||||||!!:||||||||||||||| :: euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlnValLy 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggtgaa : 224438 338 : n{L} >>>> Target Intron 1 >>>> {ys}ValGlyGluMetThrTyrMet : 345 :{|} 65 bp {||}:::|||::!:!!:!!|||||| s{L}-+ +-{ys}IleGlyGlnValSerTyrMet 224439 : a{a}at.........................aa{aa}attggacaAGTGTCGTACATG : 224527 346 : IleGluTrpTyrArgLeuThrGlyLysLysLysLeuCysCysValLeuIleIleAlaM : 365 |||!!:||||||||||||||||||!!.|||||||||||||||:!!||||||||||||| IleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaM 224528 : ATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGA : 224587 366 : etSerAsnSerSerIleLysPheThrAlaGlyAsnMetValGluLeuSerIleTyrTh : 384 ||||||||||||||||||||!!.||||||||||||||||||||||||!!!:!! !|| etSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrTh 224588 : TGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCAC : 224644 385 : rPheSerAspVal : 388 ||||.!!|||||| rPheGlyAspVal 224645 : TTTCGGTGACGTA : 224658 vulgar: AmOr30 298 388 . KQ414889.1 224323 224658 + 295 M 39 117 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224658 295 + . gene_id 15 ; sequence AmOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224324 224441 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224441 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224442 224443 . + . intron_id 1 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local intron 224442 224506 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224505 224506 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 224507 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224507 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224658 295 + . alignment_id 15 ; Query AmOr30 ; Align 224324 299 117 ; Align 224509 339 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 294 Query range: 19 -> 241 Target range: 284526 -> 285210 20 : SerIleArgTrpAsnArgPheLeuLeuLysSerLeuGlyThrTrpPro<->AsnLeuA : 38 |||:!!!:! !||||||!::!!!|||||| !!:!!|||..!|||||| !:!||| SerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuC 284527 : AGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCT : 284584 39 : rgGluSerArgIleGlyLysCysTyrSerValLeuIleGlyIleValCysTyrGlyLe : 57 !!! !!!!! !:!:! !||| ! !||||||:!!:!!!.!:!!:!! !!! ! !|| ysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLe 284585 : GCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCT : 284641 58 : uIleSerPheMetLeuThrSerSerAsnMetPheLeuValValGlu<->ValLysAsp : 75 ||||.!!|||:!:|||..! !!!!! !:!!! ! !|||:!!!!: ..! ||| uIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAsp 284642 : GATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGAT : 284698 76 : ThrTyrAsnArgIleLysMetIleGlyProLeuSerPhePheAlaMetThrLeuIleL : 95 ! !!!..!:!|||||||||||||||||||||||||||! ! !|||.!! !|||| LeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleL 284699 : CTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCA : 284758 96 : ysTyrTyrPheLeuThrPheHisGluGluAsnIleArgLysGlyIleGluHisIleGl : 114 ||||||||.!!|||! !! !.!! ! !!.||| !!:!! !!:!::!! !!|||.. ysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIleAr 284759 : AGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCG : 284815 115 : uTrpAspTrpLys<->AsnValLysHis<-><->GluGluAspLysArgIleMetIle : 130 . !||||||... !..:!!..!||| ||||||::::::...||||||! gAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMetArg 284816 : TGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTGAGG : 284872 131 : GluTyrAlaAsnTyrGlyLysLysLeuAlaLeuIleSerIlePhePheValTyrSerA : 150 !!: !|||!.. !|||::!...||||||:!!.!!!!! ! !|||:!!||||||! AspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerG 284873 : GACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCG : 284932 151 : laPheValPheTyrTyrPheValValProIleSerValGlyLysIleArg<->AspGl : 168 .! !!|||||| ! |||:!!|||:!:!!!..!! !:::! ..! !!! lyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIleAs 284933 : GAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGA : 284989 169 : uAsnLeuThrPheIleProLeuProPheProSerSerLysLeuIleAlaAspMetArg : 187 :||| !||| ! ! ! !!! ! !!||||||! !! !::: !:!! !||| !||| pAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArg 284990 : CAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGT : 285046 188 : GlnSerProAlaAsnGluIleLeuPheSerValGlnValLeuSerGlyValIleIleH : 207 ||||||:!! !||||||:!! ! !:!!||| !|||:!!!.! !!:!!|||: ThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleT 285047 : ACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATAT : 285106 208 : isAlaIleThrAlaThrAlaValSerIleAlaAlaValPheAlaValHisAlaCysGl : 226 !!:!!:!!|||!.! !||| !|||:!:||||||||||||!.!:!!|||!.!||||| yrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGl 285107 : ACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGG : 285163 227 : yGlnMetGlnMetLeuMetAsnTrpLeuGluCysLeuValAspGly : 241 ||||.!.::!!!:|||:!!!.. !|||!!: |||||||||||| yGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGly 285164 : ACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGA : 285210 vulgar: AmOr30 19 241 . KQ414889.1 284526 285210 + 294 M 16 48 G 0 3 M 37 111 G 0 3 M 46 138 G 0 3 M 4 12 G 0 6 M 44 132 G 0 3 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284527 285210 294 + . gene_id 16 ; sequence AmOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284527 285210 . + . KQ414889.1 exonerate:protein2genome:local exon 284527 285210 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284527 285210 294 + . alignment_id 16 ; Query AmOr30 ; Align 284527 20 48 ; Align 284578 36 111 ; Align 284692 73 138 ; Align 284833 119 12 ; Align 284851 123 132 ; Align 284986 167 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 286 Query range: 0 -> 274 Target range: 236798 -> 237626 1 : MetGluLysAsnArgSerIleIleGlyHisAspAspTyrGluArgAsnValAsnLeuS : 20 |||...!!.:!!!:!!!!:!::!! !.!. !:!! !!:! !:!!! !| MetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrS 236799 : ATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACA : 236856 21 : erIleArgTrpAsnArgPheLeuLeuLysSerLeuGlyThrTrpProAsnLeuArgGl : 39 ||:!!!:!|||||||||!:: !:!!||||||:!!||||||||||||.!.!!! .. erLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPhe---Se 236857 : GTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTC---TC : 236910 40 : uSerArgIleGlyLysCysTyrSerValLeuIleGlyIleValCysTyrGlyLeuIle : 58 !|||!.!:!!! !!:! ! !||| !:!!:!!..!:!::!!|||||| ! !||| rSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIle 236911 : GTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATA : 236967 59 : SerPheMetLeuThrSerSerAsnMetPheLeuValValGluValLysAspThrTyrA : 78 !||| !:!!! ! !!!!!::::!! !|||:!!:!!||| ! ! ! !|||! LeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrT 236968 : CTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACA : 237027 79 : snArgIleLysMetIleGlyProLeuSerPhePheAlaMetThrLeuIleLysTyrTy : 97 ..!:!:!:|||!!::!!||| !!|||||| !!::!.!.!. !:!!|||!..||| hrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrTh 237028 : CGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACAC : 237084 98 : rPheLeuThrPheHisGluGluAsnIleArgLysGlyIleGluHisIleGluTrpAsp : 116 !.!.||| !.!.!.....:!!!.!|||||| ! !.!!.!.|||!!:||| ||| rMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAsp 237085 : CATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGAT : 237141 117 : TrpLysAsnValLysHisGluGluAspLysArgIleMetIleGluTyrAlaAsnTyrG : 136 |||!:!!....! ...:::||| |||...:::|||:!::!!||||||!!.!:!. TrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheS 237142 : TGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTA : 237201 137 : lyLysLysLeuAlaLeuIleSerIlePhePheValTyrSerAlaPheValPheTyrTy : 155 !!::! ! !|||:!! !!!!! .!!|||:!!:!!.!!!.!.!.:!! |||! erArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCy 237202 : GTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTG : 237258 156 : rPheValValProIleSerValGlyLysIleArgAspGluAsnLeuThrPheIle<-> : 174 ! !!:!!..! !! !!!!..! ! :!! !! !! !||| !||| ||| sValMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLeu 237259 : TGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTG : 237315 175 : <->ProLeuProPheProSerSerLysLeuIleAlaAspMetArgGlnSerProAlaA : 192 !||||||!!.|||! !! !||| !:!! ! :!: ! !!:! !! !| ArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetA 237316 : CGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGA : 237375 193 : snGluIleLeuPheSerValGlnValLeuSerGlyValIleIleHisAlaIleThrAl : 211 ||!!:|||:!! !!! ! !||| !!||||||||| !!||| :!! !! !.!! snAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIl 237376 : ACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGAT : 237432 212 : aThrAlaValSerIleAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlnMet : 230 !!:!!.!:!!|||:!!.!!::!!.!.!..!! !||||||! !||||||:!!...:!! eSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerVal 237433 : CAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTG : 237489 231 : LeuMetAsnTrpLeuGluCysLeuVal<->AspGlyArgSerAspMetAsnLysIleV : 249 :!!||| ! !:!!||| !!!!||| !!:!.!||| !! !!!. ! ! ValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAspH 237490 : GTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATC : 237549 250 : alAspLysArgIleAlaLysIleValValGlnHisAspArgIleLeuLysPheLeuAl : 268 ! ! ! ..!||| !!! !||||||! !:!!||| |||:!:||||||! :!!.. isPheAspGluIleProThrIleValGluGluHisLeuArgValLeuLys***ValCy 237550 : ATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAGTATG : 237606 269 : aLeuThrGluArgAlaLeu : 274 !||| !!!: ! !||| sLeuLeuAspLeuIleLeu 237607 : TTTGTTGGATTTGATTTTG : 237626 vulgar: AmOr30 0 274 . KQ414889.1 236798 237626 + 286 M 37 111 G 1 0 M 135 405 G 0 6 M 66 198 G 0 3 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236799 237626 286 + . gene_id 17 ; sequence AmOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236799 237626 . + . KQ414889.1 exonerate:protein2genome:local exon 236799 237626 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 236799 237626 286 + . alignment_id 17 ; Query AmOr30 ; Align 236799 1 111 ; Align 236910 39 405 ; Align 237321 174 198 ; Align 237522 240 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 255 Query range: 298 -> 398 Target range: 280091 -> 280465 299 : GluTrpAsnProLysGluIleSerLeuSerLeuThrTyrIleSerLeuLeuIleSerP : 318 ||||||.!.! !!!.!!: !! ! !!!!!!!||||||:!!! !!!!|||||||||! GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerL 280092 : GAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTT : 280149 319 : heThrPheAsnIlePheIlePheCysTyrIleGlyAspLeuValAlaGluGln >>> : 336 !.|||||||||:!!||||||.!!||||||||||||!!::!!:!!:!!|||||| euThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 280150 : TAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt... : 280205 337 : > Target Intron 1 >>>> CysGlnLysValGlyGluMetThrTyrMetIleG : 347 74 bp ||| !|||||||||! ! ||||||||||||! ++CysLeuLysValGlyValSerThrTyrMetIleA 280206 : ......................agTGCTTAAAAGTCGGCGTGTCAACTTACATGATCG : 280310 348 : luTrpTyrArgLeuThrGlyLysLysLysLeuCysCysValLeuIleIleAlaMetSe : 366 !:|||||||||||| !!||||||||| !! ! !!! :!!||||||.!!|||:!!|| spTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaValSe 280311 : ACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCGTGTC : 280367 367 : rAsnSerSerIleLysPheThrAlaGlyAsnMetValGluLeuSerIleTyrThrPhe : 385 ||||||||||||||||!!.|||||||||!!.!!::!!!!:||||||:!! !!:!||| rAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPhe 280368 : GAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTC : 280424 386 : SerAspValValLysThrSerValAlaPheLeuAsnMet : 398 !!!..!||| !! ! !!:!:!!:!!!:!! !:!!:!! CysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280425 : TGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: AmOr30 298 398 . KQ414889.1 280091 280465 + 255 M 37 111 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280092 280465 255 + . gene_id 18 ; sequence AmOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280092 280465 255 + . alignment_id 18 ; Query AmOr30 ; Align 280092 299 111 ; Align 280277 336 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 246 Query range: 298 -> 403 Target range: 272836 -> 273302 299 : GluTrpAsnProLysGluIleSerLeuSerLeuThrTyrIleSerLeuLeuIleSerP : 318 ||||||!.! ! ! !!:.!!..! ! ! !||||||.!!! !:!!|||||||||. GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 319 : heThrPheAsnIlePheIlePheCysTyrIleGlyAspLeuValAlaGluGln >>> : 336 !.|||||||||||||||||| ||||||||||||!!::!!:!!.!!|||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 337 : > Target Intron 1 >>>> CysGlnLysValGlyGluMetThrTyrMetIleG : 347 70 bp |||:::|||:::||||||:!:..!||||||! . ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 348 : luTrpTyrArgLeuThrGlyLysLysLysLeuCysCysValLeuIleIleAlaMetSe : 366 !.|||||| !||| !!|||||| ! ! ||| ! :!!|||||||||:!!! !! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 367 : rAsnSerSerIleLysPheThrAlaGlyAsnMetValGluLeuSerIleTyrThrPhe : 385 !!:! ! !||||||.!!|||||||||!..!!:||| :!!|||:!:||||||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 386 : SerAsp >>>> Target Intron 2 >>>> ValValLysThrSerValAlaPh : 395 .!!||| 81 bp |||:!!|||!:!:!! !!|||!: GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 396 : eLeuAsnMetLeuArgAlaLeuThr : 403 !||||||||||||||| ! !||| rLeuAsnMetLeuArgGlnThrThr 273277 : CTTAAATATGCTACGACAAACGACA : 273302 vulgar: AmOr30 298 403 . KQ414889.1 272836 273302 + 246 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273302 246 + . gene_id 19 ; sequence AmOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273302 246 + . alignment_id 19 ; Query AmOr30 ; Align 272837 299 111 ; Align 273018 336 156 ; Align 273255 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 228 Query range: 165 -> 335 Target range: 300180 -> 301797 166 : ArgAspGluAsnLeuThrPheIleProLeuProPheProSerSerLysLeuIleAlaA : 185 !:! ||||||! !|||!:!! !|||||| !!!:!|||.!!! ! ! ! !.!! !| LysArgGluAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleA 300181 : AAAAGGGAGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCG : 300238 186 : spMetArgGlnSerProAlaAsnGluIleLeuPheSerValGlnValLeuSerGlyVa : 204 ||! !:! ||||||.!! !!||||||:::||| ... .!!:!!!.!:! spThrGlnThrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMe 300239 : ATACACAAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGAT : 300295 205 : lIleIleHisAlaIleThrAlaThrAlaValSerIleAlaAlaValPheAlaValHis : 223 !|||!!::!! !:!:|||.!!.!!||| !|||:!:||||||:!!|||!.!..!||| tIleMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHis 300296 : GATCATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCAT : 300352 224 : AlaCysGlyGlnMetGlnMetLeuMetAsnTrpLeuGluCysLeuValAspGlyArgS : 243 !|||||||||!!:|||!!:! !||| ! |||||| !||||||!!: !!! !. IleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrG 300353 : ATCTGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGG : 300412 244 : erAspMetAsnLysIleValAspLysArgIleAlaLysIleValValGlnHisAspAr : 262 !!!!:! !:!! ! ! !||| !:!!!.! |||||| !.!.|||! !: lyGluLysAspAspGlyProAspProLeuValVal---IleValArgAspHisValLy 300413 : GAGAGAAGGACGACGGTCCTGATCCTTTGGTCGTT---ATCGTTCGAGATCACGTGAA : 300466 263 : gIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheLeuAlaLeuThr : 270 !:!!|||{!:} 1110 bp {!} !! !..!! ! ! sValLeu{Ar}++ ++{g}AspProCysSerPhe 300467 : GGTTTTA{AG}gt.........................ag{A}GACCCGTGTTCCTTC : 301600 271 : GluArgAlaLeuGlnGlnIleSerPheValGluPheLeuGlyCysThrMetAsnMetC : 290 ... ! !! ! !!.:!!!!! ||| ... |||:!:||| Arg***ProThrPheHisLeuCysAlaValIleLysPheGluSerThrLeuAsnAlaL 301601 : CGTTAGCCAACTTTTCATCTCTGCgctgtaattaaatttgaatctACTTTAAATGCAA : 301660 291 : ysLeuLeuGlyTyrTyrLeuIleValGluTrpAsnProLysGluIleSerLeuSerLe : 309 !!!||| !! !! !.!! !||||||.!. !!..!!:! ! ! !! !|| ysPheLeuArgValIle***Phe***GluTrpGlnAsnSerAspThrIleAlaMetLe 301661 : AGTTTTTACGAGTAATTTGATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTT : 301717 310 : uThrTyrIleSerLeuLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIle : 328 ||||!:!.!!!!!||||||! |||||||||||||||||||||||||||||||||||| uThrPhePheThrLeuLeuThrSerPheThrPheAsnIlePheIlePheCysTyrIle 301718 : GACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATC : 301774 329 : GlyAspLeuValAlaGluGln : 335 |||!!::!!:!!:!!|||||| GlyGluIleLeuSerGluGln 301775 : GGCGAGATTCTTTCCGAACAG : 301797 vulgar: AmOr30 165 335 . KQ414889.1 300180 301797 + 228 M 89 267 G 1 0 M 9 27 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300181 301797 228 + . gene_id 20 ; sequence AmOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300181 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300181 300476 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300181 301797 228 + . alignment_id 20 ; Query AmOr30 ; Align 300181 166 267 ; Align 300448 256 27 ; Align 301588 266 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 221 Query range: 150 -> 248 Target range: 202625 -> 202910 151 : PheValPheTyrTyrPheValValProIleSerValGlyLysIleArgAspGluAsnL : 170 |||...||||||:::||||||||| !!:!!.!!:!!! !|||!!: !! |||:!!| PheThrPheTyrPhePheValValSerLeuGlyLeuGluLysMetValAlaGluAspL 202626 : tttaccttttatttttttgttgtaTCGCTTGGCTTGGAGAAAATGGTAGCAGAGGATC : 202683 171 : euThrPheIleProLeuProPheProSerSerLysLeuIleAlaAspMetArgGlnSe : 189 ||!:! :!! !!||| !!! !||| !!!!||| !|||:!:||| ! || euSer---------ValThrPheSerPheSerGlyPheIleIleAspValArgTyrSe 202684 : TTAGT---------GTGACGTTCTCCTTCTCAGGATTTATCATTGATGTTAGATACAG : 202731 190 : rProAlaAsnGluIleLeuPheSerValGlnValLeuSerGlyValIleIleHisAla : 208 ||||!.!|||||||||!!!||||||:!!!:!:!!:!!:!!! !:!!:!!||||||!.! rProValAsnGluIlePhePheSerIleArgIleValAlaValIleLeuIleHisGly 202732 : TCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAGCTGTCATCCTAATTCACGGT : 202788 209 : IleThrAlaThrAlaValSerIleAlaAlaValPheAlaValHisAlaCysGlyGlnM : 228 :!!|||!.! !||| !!!!:!:.!!|||:!!||||||||||||! !|||||||||| ValThrValGlyAlaCysCysLeuThrAlaLeuPheAlaValHisAspCysGlyGlnM 202789 : GTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGCGGTTCACGATTGCGGCCAGA : 202848 229 : etGlnMetLeuMetAsnTrpLeuGluCysLeuValAspGlyArgSerAspMetAsnLy : 247 ||.!.:!:|||||| !||||||||| !|||:!!||||||||||||||||||!:!|| etAspValLeuMetAlaTrpLeuGluHisLeuMetAspGlyArgSerAspMetSerLy 202849 : TGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGATGGTCGTTCGGATATGAGTAA : 202905 248 : sIle : 248 |!!: sMet 202906 : AATG : 202910 vulgar: AmOr30 150 248 . KQ414889.1 202625 202910 + 221 M 21 63 G 3 0 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202626 202910 221 + . gene_id 21 ; sequence AmOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202626 202910 . + . KQ414889.1 exonerate:protein2genome:local exon 202626 202910 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 202626 202910 221 + . alignment_id 21 ; Query AmOr30 ; Align 202626 151 63 ; Align 202689 175 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 334 -> 399 Target range: 254271 -> 254555 335 : GlnCysGlnLysValGlyGluMetThrTyrMetIleGluTrpTyrArgLeuThrGlyL : 354 |||||| !||||||||||||:!!..!||||||! !!!:|||||| !||| !! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 355 : ysLysLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleLysPheTh : 373 :!!:!! ||| !! :!!|||||||||.!! |||||| ! !:!!:!!.!!|| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 374 : rAlaGlyAsnMetValGluLeuSerIleTyrThrPheSerAsp >>>> Target I : 388 |||||||...::: ...:::|||:!!|||||||||.!!||| 89 rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt............. : 254433 389 : ntron 1 >>>> ValValLysThrSerValAlaPheLeuAsnMetLeu : 399 bp ||||||||||||.!! !!|||!:!|||||||||||| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeu 254434 : ............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTT : 254555 vulgar: AmOr30 334 399 . KQ414889.1 254271 254555 + 174 M 53 159 5 0 2 I 0 85 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254555 174 + . gene_id 22 ; sequence AmOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254272 254430 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254430 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254431 254432 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254431 254519 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254518 254519 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254520 254555 . + . KQ414889.1 exonerate:protein2genome:local exon 254520 254555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254555 174 + . alignment_id 22 ; Query AmOr30 ; Align 254272 335 159 ; Align 254520 388 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 334 -> 394 Target range: 238625 -> 238805 335 : GlnCysGlnLysValGlyGluMetThrTyrMetIleGluTrpTyrArgLeuThrGlyL : 354 |||||| !||||||||||||:!!..!||||||! !!!:|||||| !||| !! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 355 : ysLysLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleLysPheTh : 373 :!!:!! ||| !! :!!||||||||| ! |||||| ! !:!!||| !!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 374 : rAlaGlyAsnMetValGluLeuSerIleTyrThrPheSerAspValValLysThrSer : 392 |||||||!!.:!::!!.!.:!!|||:!!|||||||||.!!|||||| !:!!|||!:! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 393 : ValAla : 394 :!!||| LeuAla 238798 : CTTGCT : 238805 vulgar: AmOr30 334 394 . KQ414889.1 238625 238805 + 153 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238805 153 + . gene_id 23 ; sequence AmOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238805 153 + . alignment_id 23 ; Query AmOr30 ; Align 238626 335 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 333 -> 388 Target range: 277548 -> 277713 334 : GluGlnCysGlnLysValGlyGluMetThrTyrMetIleGluTrpTyrArgLeuThrG : 353 ..!||||||:!!||||||||||||:!!..!||||||! .!.|||||| !||| !!! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 354 : lyLysLysLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleLysPh : 372 !||| ! ! ||| !! :!!|||||||||:!!! |||!:! ||||||.. spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 373 : eThrAlaGlyAsnMetValGluLeuSerIleTyrThrPheSerAspVal : 388 .|||||||||...::::::::::::|||:!:|||||||||.!!|||||| eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspVal 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTA : 277713 vulgar: AmOr30 333 388 . KQ414889.1 277548 277713 + 148 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277713 148 + . gene_id 24 ; sequence AmOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277549 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277713 148 + . alignment_id 24 ; Query AmOr30 ; Align 277549 334 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 334 -> 393 Target range: 244655 -> 244832 335 : GlnCysGlnLysValGlyGluMetThrTyrMetIleGluTrpTyrArgLeuThrGlyL : 354 |||||| !||||||||||||:!!..!||||||! !!!:|||||| !||| !! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 355 : ysLysLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleLysPheTh : 373 :!!:!! ||| !! :!!||||||||| ! ||||||! ! !:!!:!!.!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 374 : rAlaGlyAsnMetValGluLeuSerIleTyrThrPheSerAspValValLysThrSer : 392 |||||||!!.:!::!!.!.:!!|||:!!|||||||||.!!|||||| !:!!|||!.! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrLys 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAA : 244827 393 : Val : 393 :!! Leu 244828 : CTT : 244832 vulgar: AmOr30 334 393 . KQ414889.1 244655 244832 + 146 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244832 146 + . gene_id 25 ; sequence AmOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244832 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244832 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244832 146 + . alignment_id 25 ; Query AmOr30 ; Align 244656 335 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 334 -> 388 Target range: 258462 -> 258624 335 : GlnCysGlnLysValGlyGluMetThrTyrMetIleGluTrpTyrArgLeuThrGlyL : 354 ||||||:!!|||||||||!!::!!..!||||||! !!!:|||||| !||| !!! !| GlnCysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspL 258463 : CAGTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACA : 258520 355 : ysLysLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleLysPheTh : 373 ||!:!! !||| !! :!!|||:!!|||||| |||!:! ! !:!!:!!.!!|| ysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleTh 258521 : AAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCAC : 258577 374 : rAlaGlyAsnMetValGluLeuSerIleTyrThrPheSerAspVal : 388 |||||||...... ...::!|||||||||||||||||||||||| rAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAspVal 258578 : CGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATGTG : 258624 vulgar: AmOr30 334 388 . KQ414889.1 258462 258624 + 146 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258463 258624 146 + . gene_id 26 ; sequence AmOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 258463 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258463 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258463 258624 146 + . alignment_id 26 ; Query AmOr30 ; Align 258463 335 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 334 -> 388 Target range: 264723 -> 264885 335 : GlnCysGlnLysValGlyGluMetThrTyrMetIleGluTrpTyrArgLeuThrGlyL : 354 ||||||:!!||||||||||||:!!..!|||||| .!.|||||| !||| !! !| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 355 : ysLysLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleLysPheTh : 373 || ! ! ||| ! :!!||||||||| !! |||!:! ! !.!!|||||||| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 374 : rAlaGlyAsnMetValGluLeuSerIleTyrThrPheSerAspVal : 388 |||||||!!.!!::!!.!.:!!|||!!:|||||||||||||||||| rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: AmOr30 334 388 . KQ414889.1 264723 264885 + 144 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264885 144 + . gene_id 27 ; sequence AmOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264885 144 + . alignment_id 27 ; Query AmOr30 ; Align 264724 335 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 259 -> 298 Target range: 224122 -> 224239 260 : HisAspArgIleLeuLysPheLeuAlaLeuThrGluArgAlaLeuGlnGlnIleSerP : 279 !.!...!:! !! !!:!||||||.!!! !||||||!:!||||||||||||:!!|||| ArgSerLysCysCysArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerP 224123 : CGTTCGAAATGTTGCAGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGT : 224180 280 : heValGluPheLeuGlyCysThrMetAsnMetCysLeuLeuGlyTyrTyrLeuIleVa : 298 ||||||||||||||||||||! !:!!|||!!:||||||||||||||||||:!!||||| heValGluPheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleVa 224181 : TCGTGGAATTTCTAGGCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGT : 224237 299 : l : 298 | l 224238 : G : 224239 vulgar: AmOr30 259 298 . KQ414889.1 224122 224239 + 140 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224123 224239 140 + . gene_id 28 ; sequence AmOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224123 224239 . + . KQ414889.1 exonerate:protein2genome:local exon 224123 224239 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224123 224239 140 + . alignment_id 28 ; Query AmOr30 ; Align 224123 260 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 333 -> 388 Target range: 283273 -> 283438 334 : GluGlnCysGlnLysValGlyGluMetThrTyrMetIleGluTrpTyrArgLeuThrG : 353 ..!||||||:!!||||||||||||:!!..!||||||! .!.! !!:! !||| !!! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 354 : lyLysLysLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleLysPh : 372 !||| ! ! ||| !! :!!|||||||||:!!! |||!:! ||||||.. spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 373 : eThrAlaGlyAsnMetValGluLeuSerIleTyrThrPheSerAspVal : 388 .||||||......:::::::::::!||| |||||||||..!|||||| eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspVal 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTA : 283438 vulgar: AmOr30 333 388 . KQ414889.1 283273 283438 + 119 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283438 119 + . gene_id 29 ; sequence AmOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283438 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283438 119 + . alignment_id 29 ; Query AmOr30 ; Align 283274 334 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 334 -> 388 Target range: 206239 -> 206401 335 : GlnCysGlnLysValGlyGluMetThrTyrMetIleGluTrpTyrArgLeuThrGlyL : 354 ||| !!!. |||||| !! :!!! !! !:!:.!.|||||||||||| !!..!! GlnAsnHisValValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnA 206240 : CAGAACCACGTCGTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACA : 206297 355 : ysLysLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleLysPheTh : 373 :! ! !! !! ! :!!|||||||||||||||||||||! ! !!||||||!!.|| rgHisAlaArgSerMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuTh 206298 : GACATGCGCGCTCTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAAC : 206354 374 : rAlaGlyAsnMetValGluLeuSerIleTyrThrPheSerAspVal : 388 |||||||!!.||| !!|||:!!|||:!! !!:!|||!!!|||||| rAlaGlyLysMetPheGluMetSerLeuAlaSerPheThrAspVal 206355 : AGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTCACCGATGTA : 206401 vulgar: AmOr30 334 388 . KQ414889.1 206239 206401 + 117 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206240 206401 117 + . gene_id 30 ; sequence AmOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206240 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206240 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206240 206401 117 + . alignment_id 30 ; Query AmOr30 ; Align 206240 335 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 298 -> 335 Target range: 291368 -> 291479 299 : GluTrpAsnProLysGluIleSerLeuSerLeuThrTyrIleSerLeuLeuIleSerP : 318 ||||||.!. !!..!!: ! ! !! !|||||||||:!!!!!||||||! !|||| GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 319 : heThrPheAsnIlePheIlePheCysTyrIleGlyAspLeuValAlaGluGln : 335 ||||||||||||||.!.||||||||||||:!!|||!!:|||:!! !! !||| heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAG : 291479 vulgar: AmOr30 298 335 . KQ414889.1 291368 291479 + 109 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 291479 109 + . gene_id 31 ; sequence AmOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 291479 109 + . alignment_id 31 ; Query AmOr30 ; Align 291369 299 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 336 -> 388 Target range: 305627 -> 305783 337 : GlnLysValGlyGluMetThrTyrMetIleGluTrpTyrArgLeuThrGlyLysLysL : 356 ...!..|||||| ! !!:!||||||...||||||!.!||| !! !|||! !! SerSerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrI 305628 : AGTAGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGA : 305685 357 : ysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleLysPheThrAlaGl : 375 !! ! !! !:!!||||||||||||||||||!:!!:! !! !|||.!!!:!||||| leHisGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGl 305686 : TACATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGG : 305742 376 : yAsnMetValGluLeuSerIleTyrThrPheSerAspVal : 388 |!!.:!:|||!!:||||||:!!! !||||||.!!:!!||| yLysValValAspLeuSerLeuSerThrPheGlyAsnVal 305743 : TAAAGTAGTTGATTTATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: AmOr30 336 388 . KQ414889.1 305627 305783 + 105 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305628 305783 105 + . gene_id 32 ; sequence AmOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305628 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305628 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305628 305783 105 + . alignment_id 32 ; Query AmOr30 ; Align 305628 337 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 290 -> 335 Target range: 305076 -> 305211 291 : LeuLeuGlyTyrTyrLeuIleValGluTrpAsnProLysGluIleSerLeuSerLeuT : 310 !!!||| |||||| !!!:|||.!. !!...!.! ! ! ! ! !| PheLeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrT 305077 : TTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAA : 305134 311 : hrTyrIleSerLeuLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGl : 329 |||||! ! !|||||||||||| ! ||||||||||||||||||!!.||||||||||| hrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGl 305135 : CATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGG : 305191 330 : yAspLeuValAlaGluGln : 335 |!!::!!:!! !|||:!! yGluIleLeuMetGluLys 305192 : TGAGATTCTTATGGAAAAG : 305211 vulgar: AmOr30 290 335 . KQ414889.1 305076 305211 + 100 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305077 305211 100 + . gene_id 33 ; sequence AmOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305077 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305077 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305077 305211 100 + . alignment_id 33 ; Query AmOr30 ; Align 305077 291 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1475 Query range: 0 -> 410 Target range: 303127 -> 305937 1 : MetHisLeuThrThrLeuAsnLysAsnAsnCysLysValArgAsnLeuLysTyrLysG : 20 |||||||||:!!! !! !.!.:!!! !:!! ! ||| !|||||||||!!.||||||: MetHisLeuSerMetArgGluGlnIleAspArgLysProArgAsnLeuAsnTyrLysL 303128 : ATGCATCTCTCTATGCGAGAGCAGATCGATCGGAAACCGCGGAATTTGAATTACAAGA : 303185 21 : luAspIleAlaTyrIleThrLysHisAsnLysTrpIleLeuLysSerIleGlyIleTr : 39 !!||||||!.!|||:!!|||||||||!:!||||||||||||||||||:!!|||||||| ysAspIleValTyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTr 303186 : AAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTG : 303242 40 : pProSerValLeuLysSerValSerArgPheLeuProLysIleMetPheGlyPheAsn : 58 ||||:!!|||||| ! ..!..!:!! !!|||||||||||||||! .!!|||.!!!:! pProAlaValLeuAspGluThrAlaGlyPheLeuProLysIleThrIleGlyLeuSer 303243 : GCCAGCCGTGTTGGACGAAACCGCAGGATTCCTACCAAAAATCACCATTGGACTCAGT : 303299 59 : AsnPheValLeuLeuPheSerValIleProCysIleLeuTyrIleValTyrGluGluL : 78 |||!!.||||||||||||!!!||||||||||||||||||:!!|||:!!!:!|||:!!| AsnLeuValLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnL 303300 : AATTTGGTTCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAA : 303359 79 : ysAsnIleMetIleLysPheLysLeuValGlyLeuLeuSerPheSerLeuIleAlaLe : 97 ||:!!! !!:|||!:!!!.|||||| !!|||||||||||||||!!!||||||:!!|| ysAspThrIleIleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLe 303360 : AGGATACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTT : 303416 98 : uIleLysTyrTrpThrLeuThrTyrArgLysProArgIleLysAspCysIleGluGln : 116 |!!:|||||||||.!!|||.!! ||||||||||||||||||!!:|||||||||:!! uMetLysTyrTrpAlaLeuAlaThrArgLysProArgIleLysGluCysIleGluGlu 303417 : GATGAAGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAG : 303473 117 : IleTrpIleAspTrpGluGln >>>> Target Intron 1 >>>> ValGluLe : 126 :!: ! !||||||:!!:!! 938 bp ||||||! ValGlnSerAspTrpLysGlu++ ++ValGluSe 303474 : GTGCAAAGTGATTGGAAAGAGgt.........................agGTGGAATC : 304441 127 : uHisGluAspArgLysValMetLeuLysTyrGlyGlnIleGlyArgAsnLeuThrIle : 145 !! !..!||||||:!!:!!||||||||||||||||||!!:|||||||||||||||||| rLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIle 304442 : TCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATA : 304498 146 : IleCysAlaValPheIleTyrThrGlyGlySerIlePheHisThrIleLeuGlnTyrL : 165 |||||||||:!!|||!!:||||||||||||!!!|||!:!||||||:!!:!!|||!:! IleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheA 304499 : ATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCG : 304558 166 : ysIleGlyThrPheIleAspGluHisAsnArgThrIleLysProValValTyrProTh : 184 !! !||||||!:!:!:||||||:!!||||||||||||||||||:!!||||||||||| laThrGlyThrTyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProTh 304559 : CGACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCAC : 304615 185 : rTyrAsnAlaLeuPheAspValGlnLysSerProIleTyrGluLeuValTyrLeuLeu : 203 ||||!:!||||||||||||||||||! !||||||||||||||||||||||||!!!:!! rTyrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheVal 304616 : CTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTT : 304672 204 : HisSerIleCysGlyTyrIleMetTyrSerValThrAlaGlySerCysGlyLeuThrA : 223 |||!!!!!:|||||||||:!!!!:||||||:!!|||||||||:!!|||||||||.!!| HisCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaA 304673 : CATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCG : 304732 224 : laLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValIleAlaArgLeuAsnAs : 242 |||||||||||||||||||||||||||||||||||||||||!!::!!||||||..!|| laLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAs 304733 : CTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGA : 304789 243 : pLeuIleHisGlyLysTyrThrLysAsnThrPheAsnLeuAsnThrArgLeuValLys : 261 ||||:!!:!! !:!|||.!.:!!! !:!!|||:!!! !||||||:!!:!! pLeuValAsn---------SerLysGluSerSerAspLeuAspLysArgLeuIleGlu 304790 : TCTTGTCAAC---------AGCAAAGAATCATCTGATTTAGATAAACGATTAATAGAA : 304837 262 : IleValLysHisHisLeuArgIleLeu{Ar} >>>> Target Intron 2 >>>> : 271 ||||||:!!||||||||||||||||||{||} 70 bp IleValGluHisHisLeuArgIleLeu{Ar}++ 304838 : ATTGTTGAGCATCATTTGCGAATTTTA{AG}gt......................... : 304871 272 : {g}PheSerGluSerIleGluMetAlaLeuGlnGluLeuCysPheLeuGluCysIl : 289 {|}||||||! !! !:!::!!! !.!|||||||||:!!||||||||||||! !|| ++{g}PheSerAlaIleValGlnThrValLeuGlnGluValCysPheLeuGluPheIl 304872 : ag{A}TTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTTCTTGGAATTCAT : 304991 290 : eGlySerThrPheLeuIleCysLeuLeuGluTyrTyrCysIleThr >>>> Targe : 305 ||||||||||!!.||||||||||||||||||||||||||||||||| eGlySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysIleThr++ 304992 : TGGTTCTACCTTACTGATATGTCTACTTGAATACTACTGTATAACGgt.......... : 305041 306 : t Intron 3 >>>> AspTrpGluLeuSerAsnThrIleSerLeuThrThrTyrTh : 318 62 bp ||||||||| !|||||||||:!!||||||||||||||||| ++AspTrpGluSerSerAsnThrValSerLeuThrThrTyrTh 305042 : ...............agGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATAC : 305140 319 : rMetLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluArg : 337 |:!!||||||||||||:!!||||||||||||||||||||||||||||||||||||! ! rValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIle 305141 : AGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATT : 305197 338 : LeuMetGluLys >>>> Target Intron 4 >>>> SerSerSerIleGlyLe : 347 |||||||||||| 413 bp |||||||||:!!||||| LeuMetGluLys++ ++SerSerSerValGlyLe 305198 : CTTATGGAAAAGgt.........................agAGCAGTAGCGTTGGATT : 305640 348 : uSerCysPheMetIleAspTrpPheGlnLeuProThrLysThrIleHisAspLeuIle : 366 ||||||||||||||||..!|||!:!!!.|||||||||||||||||||||! !|||||| uSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIle 305641 : ATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATT : 305697 367 : LeuIleIleAlaMetSerAsnAsnProIleLysIleSerAlaGlySerIleValAspL : 386 ||||||||||||||||||!:!|||||| !|||||||||||||||!.!:!!||||||| LeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysValValAspL 305698 : TTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATT : 305757 387 : euSerLeuTyrThrPheGlyGly >>>> Target Intron 5 >>>> ValLeu : 395 ||||||||! !|||||||||..! 106 bp |||||| euSerLeuSerThrPheGlyAsn++ ++ValLeu 305758 : TATCTTTATCCACATTTGGAAACgt.........................agGTTCTG : 305890 396 : LysThrSerLeuValTyrLeuSerPheLeuArgThrThrIleMet : 410 ||||||||||||!.!||||||||||||||||||||||||:!!!!: LysThrSerLeuAlaTyrLeuSerPheLeuArgThrThrValIle 305891 : AAAACGTCATTAGCGTATTTAAGTTTCCTTCGGACTACCGTTATA : 305937 vulgar: AmOr61 0 410 . KQ414889.1 303127 305937 + 1475 M 123 369 5 0 2 I 0 934 3 0 2 M 122 366 G 3 0 M 22 66 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 37 111 5 0 2 I 0 409 3 0 2 M 52 156 5 0 2 I 0 102 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303128 305937 1475 + . gene_id 1 ; sequence AmOr61 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303128 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303128 303496 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304868 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 2 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305780 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305780 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305781 305782 . + . intron_id 5 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305781 305886 . + . intron_id 5 KQ414889.1 exonerate:protein2genome:local splice3 305885 305886 . + . intron_id 4 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305887 305937 . + . KQ414889.1 exonerate:protein2genome:local exon 305887 305937 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303128 305937 1475 + . alignment_id 1 ; Query AmOr61 ; Align 303128 1 369 ; Align 304435 124 366 ; Align 304801 249 66 ; Align 304940 272 99 ; Align 305101 305 111 ; Align 305625 342 156 ; Align 305887 394 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 610 Query range: 17 -> 401 Target range: 226912 -> 230427 18 : TyrLysGluAspIleAlaTyrIleThrLysHisAsnLysTrpIleLeuLysSerIleG : 37 |||:!!||| !!:!: ! ! !! !:!! |||:::|||:!:|||||| !!:!!| TyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuG 226913 : TATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCG : 226970 38 : lyIleTrpProSerValLeuLysSer<-><->ValSerArgPheLeuProLysIleMe : 54 |||||||||||||| !! !|||||| :!!.!!|||! !!!! !! !:!:|| lyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMe 226971 : GTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGAT : 227027 55 : tPheGlyPheAsnAsnPheValLeuLeuPheSerValIleProCysIleLeuTyrIle : 73 | ! !.!! ! !! :!!:!! !|||..!:!!:!! !! !! !||||||:!: tGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrVal 227028 : GGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTG : 227084 74 : ValTyrGluGluLysAsnIleMetIleLysPheLysLeuValGlyLeuLeuSerPheS : 93 ||| |||! !|||..! ! ! !! !.!.|||:!!:!!|||! !:!!||||||! ValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPheP 227085 : GTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCT : 227144 94 : erLeuIleAlaLeuIleLysTyrTrpThrLeuThrTyrArgLysProArgIleLysAs : 112 ! !!!::!!|||:!!||||||! ! !||||||!:!!.!:!! ! !||| !! heAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGl 227145 : TCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGA : 227201 113 : pCysIleGluGlnIleTrpIleAspTrpGluGlnValGluLeuHisGluAspArgLys : 131 :|||:!!|||!:!||| ||||||:!!.!.:!!..!! !! |||||||||!!. uCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsn 227202 : GTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAAC : 227258 132 : ValMetLeuLysTyrGlyGlnIleGlyArgAsnLeuThrIleIleCysAlaValPheI : 151 ||||||:!!! !|||!.! ! !||||||!!.|||! !! !||||||.!! !!|||: ValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheV 227259 : GTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCG : 227318 152 : leTyrThrGlyGlySerIlePheHisThrIleLeuGlnTyrLysIleGlyThrPheIl : 170 !!!:!!::... ...|||:::! !:!!:!!! !!!. !|||!:! !! alPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerValAl 227319 : TCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGC : 227375 171 : eAspGluHis<->AsnArgThrIleLysProValValTyrProThrTyrAsnAlaLeu : 188 ! ||| !! |||!.!!:! !! ! !:!! !!:!||| ! !!. !:!! aThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIleIle 227376 : AACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATC : 227432 189 : PheAspValGlnLysSerProIleTyrGluLeuValTyrLeuLeuHisSerIleCysG : 208 !||||||!:: ! ||||||.!! !!|||:!! !!!:!! !:!!!!.! !:!! | AlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValThrG 227433 : GCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAG : 227492 209 : lyTyrIleMetTyrSerValThrAlaGlySerCysGlyLeuThrAlaLeuPheAlaTh : 227 || !:!::!!:!!.!!||||||:!!!.!:!!|||.!!:!!.!!||||||.!!|||.. lyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaVa 227493 : GTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGT : 227549 228 : rHisAlaCysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeuIleHisGly : 246 !|||||||||||||||!!:!!::!::!!:!::!! !!|||... !!|||||| !!||| lHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGly 227550 : TCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGC : 227606 247 : LysTyrThrLysAsnThrPheAsnLeuAsnThrArgLeuValLysIleValLysHisH : 266 !:! !! !!:!! ! !..|||:!! !|||:!!!.!!..||||||! |||| ArgAlaAspMetSerLys---ThrLeuAspAspArgIleAlaSerIleValThrHisH 227607 : AGAGCGGATATGAGCAAA---ACACTGGATGATAGAATCGCTAGCATCGTCACTCACC : 227663 267 : isLeuArgIleLeu{Ar} >>>> Target Intron 1 >>>> {g}PheSerGl : 274 ||:!!|||||||||{!.} 396 bp {!}||| !! isValArgIleLeu{As}++ ++{n}PheLeuAl 227664 : ACGTTCGAATATTG{AA}gt.........................ag{C}TTTCTGGC : 228083 275 : uSerIleGluMetAlaLeuGlnGluLeuCysPheLeuGluCysIleGlySerThrPhe : 293 !||||||! .!!:!!|||:!!:!!..!|||:!!|||! !:!!|||!!!|||.!. aLeuIleGluLysThrMetGlnGlnIleAlaPheValGluPheLeuGlyCysThrIle 228084 : CCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGTACAATA : 228140 294 : LeuIleCysLeuLeuGluTyrTyrCysIleThr >>>> Target Intron 2 >> : 305 :!!:!:||||||:!!||||||||| !|||||| 72 bp IleLeuCysLeuIleGluTyrTyrIleIleThr++ 228141 : ATTCTGTGCCTCATCGAGTATTACATCATAACGgt....................... : 228178 306 : >> AspTrpGluLeuSerAsnThrIleSerLeuThrThrTyrThrMetLeuLeuIle : 322 !!:|||.!.! !!.!.!. !! !! ! !..!||||||:!! !||||||:!! ++GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeu 228179 : ..agGAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTA : 228299 323 : SerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluArgLeuMetGluLys : 342 |||!!!||||||||||||||||||...|||||||||||||||! !:!! ||| ! SerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluHis+ 228300 : TCCTTTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACg : 228359 343 : >>>> Target Intron 3 >>>> SerSerSerIleGlyLeuSerCysPheMet : 351 1889 bp !!!!!!!.!:!!||| !!.!! !:!||| + ++CysArgLysValGlyGluLysSerTyrMet 228360 : t.........................agTGCAGAAAAGTCGGCGAAAAGTCGTACATG : 230275 352 : IleAspTrpPheGlnLeuProThrLysThrIleHisAspLeuIleLeuIleIleAlaM : 371 |||!!:|||!:!!:!||| !! !!!.! !! ! ! !! !|||||||||||||||| IleGluTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaM 230276 : ATCGAATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCA : 230335 372 : etSerAsnAsnProIleLysIleSerAlaGlySerIleValAspLeuSerLeuTyrTh : 390 |||||||| ! !!! |||.!!!!!||||||!:!!!:|||!!:||||||:!! !!|| etSerAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnTh 230336 : TGTCCAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACAC : 230392 391 : rPheGlyGlyValLeuLysThrSerLeuValTyr : 401 ||||.!!! !||| !! ! !! !! !|||||| rPheSerAspValSerIleIlePheSerValTyr 230393 : TTTCAGCGACGTAAGTATCATATTCTCTGTTTAC : 230427 vulgar: AmOr61 17 401 . KQ414889.1 226912 230427 + 610 M 28 84 G 0 6 M 128 384 G 0 3 M 79 237 G 1 0 M 17 51 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226913 230427 610 + . gene_id 2 ; sequence AmOr61 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226913 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226913 227679 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230427 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230427 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226913 230427 610 + . alignment_id 2 ; Query AmOr61 ; Align 226913 18 84 ; Align 227003 46 384 ; Align 227390 174 237 ; Align 227627 254 51 ; Align 228077 272 99 ; Align 228248 305 111 ; Align 230248 342 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 472 Query range: 171 -> 394 Target range: 300183 -> 302036 172 : GluHisAsnArgThrIleLysProValValTyrProThrTyrAsnAlaLeuPheAspV : 191 ..!.!.||| !||| !||||||:!!!.!|||||| !|||:!! !!!!.!!|||. ArgGluAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspT 300184 : AGGGAGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATA : 300241 192 : alGlnLysSerProIleTyrGluLeuValTyrLeuLeuHisSerIleCysGlyTyrIl : 210 .!|||! ||||||! !||||||:::|||:::......||| .!!...!.! || hrGlnThrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIl 300242 : CACAAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGAT : 300298 211 : eMetTyrSerValThrAlaGlySerCysGlyLeuThrAlaLeuPheAlaThrHisAla : 229 |||||||!:!||||||.!!!.!:!!! !.!!|||.!!|||:!!|||!.!|||||| ! eMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIle 300299 : CATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATC : 300355 230 : CysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeuIleHisGlyLysTyrT : 249 ||||||||||||.!.||| !!!:|||||||||.!.||||||:!:.!. !!! ! CysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrGlyG 300356 : TGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGGGAG : 300415 250 : hrLysAsnThrPheAsnLeuAsnThrArgLeuValLysIleValLysHisHisLeuAr : 268 !|||:!! :!! ! ! !! !|||||| ||||||::! !!|||:!!!: luLysAsp------AspGlyProAspProLeuValValIleValArgAspHisValLy 300416 : AGAAGGAC------GACGGTCCTGATCCTTTGGTCGTTATCGTTCGAGATCACGTGAA : 300466 269 : gIleLeu{Ar} >>>> Target Intron 1 >>>> {g}PheSerGluSerIle : 276 !:!!|||{||} 140 bp {|}|||:!!:!!!:!:!! sValLeu{Ar}++ ++{g}PheAlaLysAsnVal 300467 : GGTTTTA{AG}gt.........................ag{A}TTTGCAAAGAACGTT : 300630 277 : GluMetAlaLeuGlnGluLeuCysPheLeuGluCysIleGlySerThrPheLeuIleC : 296 ||| .!!|||!::!!:!!!|||!!.:!!||| !.!!! !||||||.!.:!!:!:| GluGluThrLeuArgAspPheCysLeuValGluIlePheGluSerThrLeuIleLeuC 300631 : GAGGAAACTTTGCGTGACTTCTGCTTAGTGGAAATCTTCGAGTCCACGCTGATTTTGT : 300690 297 : ysLeuLeuGluTyrTyrCysIleThr >>>> Target Intron 2 >>>> Asp : 305 ||||||||||||||||||||:!:..! 970 bp !!: ysLeuLeuGluTyrTyrCysLeuVal++ ++Glu 300691 : GTTTGCTCGAATACTACTGTTTGGTGgt.........................agGAA : 301687 306 : TrpGluLeuSerAsnThrIleSerLeuThrThrTyrThrMetLeuLeuIleSerLeuT : 325 |||:!! !|||:!!||||||:!!:!! !|||!:! !! ||||||! |||!!!| TrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheT 301688 : TGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCA : 301747 326 : hrPheAsnIlePheIleLeuCysTyrIleGlyGluArgLeuMetGluLys >>>> T : 342 |||||||||||||||||!!!|||||||||||||||! !||| |||:!! hrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301748 : CTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt...... : 301800 343 : arget Intron 3 >>>> SerSerSerIleGlyLeuSerCysPheMetIleAspT : 354 80 bp !!!|||..!||||||! !:!!! !:! !||||||| ++CysSerGlnIleGlySerAlaSerTyrGluIleAspT 301801 : ...................agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATT : 301914 355 : rpPheGlnLeuProThrLysThrIleHisAspLeuIleLeuIleIleAlaMetSerAs : 373 ||!:!.!.||||||.!!|||! ! !:!!||||||||||||:!!! !!.!!!:|||.! rpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGl 301915 : GGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCA : 301971 374 : nAsnProIleLysIleSerAlaGlySerIleValAspLeuSerLeuTyrThrPheGly : 392 . !!||| |||:!!!!!||||||!.!|||:!!|||||||||||| !!||||||.!! nTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSer 301972 : GTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGC : 302028 393 : GlyVal : 394 ..!||| SerVal 302029 : TCTGTA : 302036 vulgar: AmOr61 171 394 . KQ414889.1 300183 302036 + 472 M 80 240 G 2 0 M 17 51 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 33 99 5 0 2 I 0 966 3 0 2 M 37 111 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300184 302036 472 + . gene_id 3 ; sequence AmOr61 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300184 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300184 300476 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 300616 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300615 300616 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300617 300716 . + . KQ414889.1 exonerate:protein2genome:local exon 300617 300716 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300717 300718 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300717 301686 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301685 301686 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300184 302036 472 + . alignment_id 3 ; Query AmOr61 ; Align 300184 172 240 ; Align 300424 254 51 ; Align 300618 272 99 ; Align 301687 305 111 ; Align 301878 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 470 Query range: 23 -> 394 Target range: 262849 -> 264885 24 : TyrIleThrLysHisAsnLysTrpIleLeuLysSerIleGlyIleTrpPro<-><->S : 41 |||! ! !:!! |||::!|||:!:|||||| !!|||||| !|||||| : TyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerA 262850 : TACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCG : 262907 42 : erValLeuLysSerValSerArgPheLeuProLysIleMetPheGlyPheAsnAsnPh : 60 !! !:!!..!!!!:!!..!|||.!!:!! ! :!!:!:.!!! ! !! ! !!! laSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCy 262908 : CCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTG : 262964 61 : eValLeuLeuPheSerValIleProCysIleLeuTyrIleValTyrGluGluLysAsn : 79 !:!!:!!|||! !!!!|||||||||! !||||||:!!|||||| |||! :!!||| sLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsn 262965 : TCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAAT : 263021 80 : IleMetIleLysPheLysLeuValGlyLeuLeuSerPheSerLeuIleAlaLeuIleL : 99 .!! !!:|||.!.:!!:!!:!!|||! !|||.!! !!!!!!:!!!.!:!!|||! PheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleA 263022 : TTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCA : 263081 100 : ysTyrTrpThrLeuThrTyrArgLysProArgIleLysAspCysIleGluGlnIleTr : 118 !.||| !||| ! !!.!!.. ! !|||:!!! !|||:!::!!!!.:!: snTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGl 263082 : ATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCA : 263138 119 : pIleAspTrpGluGlnValGluLeuHisGluAspArgLysValMetLeuLysTyrGly : 137 ! !|||||| ||| ! ||||||!:!::::!!||||||||| !!!.! nGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAla 263139 : GGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCG : 263195 138 : GlnIleGlyArgAsnLeuThrIleIleCysAlaValPheIleTyrThrGlyGlySerI : 157 :!! !|||||| !!:!!.!! ! !||||||:!!|||!!: ! |||.!! !! ! LysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetC 263196 : AAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGT : 263255 158 : lePheHisThrIleLeuGlnTyrLysIleGlyThrPheIleAsp<->GluHisAsnAr : 175 ! ! !:!! ! !!:!! ! ! !..!.!! ||| .!..!.!.!|| ysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrAr 263256 : GCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAG : 263312 176 : gThrIleLysProValValTyrProThrTyrAsnAlaLeuPheAspValGlnLysSer : 194 |! !:!!::: !:!! !! !|||..!|||!!.! !:!!.!! |||.!.! !!:! gIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThrAsn 263313 : AATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAAT : 263369 195 : ProIleTyrGluLeuValTyrLeuLeuHisSerIleCysGlyTyrIleMetTyrSerV : 214 |||! !!|||:!! !! ! ! !!!.! !:!:! |||!:!|||:!: !:!!. ProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaT 263370 : CCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGA : 263429 215 : alThrAlaGlySerCysGlyLeuThrAlaLeuPheAlaThrHisAlaCysGlyGlnIl : 233 .!|||!.!|||:!!! !|||:!!||||||:!!|||||| !|||||||||||||||:! hrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLe 263430 : CAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTT : 263486 234 : eAspIleValIleAlaArgLeuAsnAspLeuIleHisGlyLysTyrThrLysAsnThr : 252 ::!!:!::!!!!::!! !!:!!!..!!:!!!:!::!! !... !:!!|||! ! uAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLys 263487 : GAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAG : 263543 253 : PheAsnLeuAsnThrArgLeuValLysIleValLysHisHisLeuArgIleLeu{Ar} : 271 ! !! ! !|||..!:!!! ! !||||||:!!||||||||||||:!!|||{!!} AsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeu{Se} 263544 : AATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTG{AG} : 263600 272 : >>>> Target Intron 1 >>>> {g}PheSerGluSerIleGluMetAlaLe : 280 833 bp {!}|||! ! ! !!!! !.!. ! ! ++ --{r}PheIleTyrCysThrAsnCysAspLy 263601 : gt.........................ct{T}TTTATCTATTGCACAAATTGTGATAA : 264460 281 : uGlnGluLeuCysPheLeuGluCysIleGlySerThrPheLeu<->IleCysLeuLeu : 298 .........|||...|||:!!|||:!:..!!!! !.!.:!! :!!!! !:!! sAspAsnPheCysLeuLeuGlnCysLeuSerArgAspIleIlePheVal***AsnIle 264461 : agacaatttttgtttacttcAGTGTTTGTCCAGGGATATAATATTTGTATGAAATATA : 264517 299 : GluTyrTyrCysIleThrAspTrpGluLeuSerAsnThrIleSerLeuThrThrTyrT : 318 ! ! !! !.!! !!!:|||||| ! ::: :::|||||||||||| ThrIleAspValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrP 264518 : ACAATTGACGTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATATT : 264577 319 : hrMetLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluAr : 337 !|||:!!|||||||||:!! ! !|||||||||:!!:!!|||||||||||||||! heMetIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIl 264578 : TCATGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGAT : 264634 338 : gLeuMetGluLys >>>> Target Intron 2 >>>> SerSerSerIleGlyL : 347 !|||! |||::: 78 bp !!!!.!!.!:!!||| eLeuThrGluGln++ ++CysLysLysValGlyG 264635 : ATTGACTGAGcaggt.........................agTGTAAGAAAGTTGGTG : 264742 348 : euSerCysPheMetIleAspTrpPheGlnLeuProThrLysThrIleHisAspLeuIl : 366 ! ! !!:!||| :!!|||!:! ! |||||| !||| !|||! !|||||||| luValValTyrMetSerAsnTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIl 264743 : AGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACAAAGATATCCTTGATCTGAT : 264799 367 : eLeuIleIleAlaMetSerAsnAsnProIleLysIleSerAlaGlySerIleValAsp : 385 |||||||||| !! |||!:! !.!!|||.!!!!!||||||!.!|||:!! !! eLeuIleIleLeuArgSerSerValValPheLysPheThrAlaGlyLysIleLeuHis 264800 : TCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCACCGCTGGAAAGATACTTCAC : 264856 386 : LeuSerLeuTyrThrPheGlyGlyVal : 394 :!!|||:!!|||||||||.!!! !||| MetSerMetTyrThrPheSerAspVal 264857 : ATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: AmOr61 23 394 . KQ414889.1 262849 264885 + 470 M 17 51 G 0 6 M 131 393 G 0 3 M 99 297 S 0 2 5 0 2 I 0 829 3 0 2 S 1 1 M 23 69 G 0 3 M 47 141 5 0 2 I 0 74 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262850 264885 470 + . gene_id 4 ; sequence AmOr61 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262850 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262850 263601 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 264434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264433 264434 . + . intron_id 0 ; splice_site "CT" KQ414889.1 exonerate:protein2genome:local cds 264435 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264435 264648 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264726 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262850 264885 470 + . alignment_id 4 ; Query AmOr61 ; Align 262850 24 51 ; Align 262907 41 393 ; Align 263303 172 297 ; Align 264436 272 69 ; Align 264508 295 141 ; Align 264727 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 439 Query range: 14 -> 344 Target range: 232432 -> 234923 15 : AsnLeuLysTyrLysGluAspIleAlaTyrIleThrLysHisAsnLysTrpIleLeuL : 34 !..|||!!. !! !..!||| !! !|||! !! !:!! |||:::|||.!!|||! ThrLeuAsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuT 232433 : ACGTTGAACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGA : 232490 35 : ysSerIleGlyIleTrpProSerValLeuLysSer<-><->ValSerArgPheLeuPr : 51 ! !!!!:||| !|||||| !!||| !:!!!!! !.!..!!:!.!.||| ! hrProMetGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAl 232491 : CACCGATGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGC : 232547 52 : oLysIleMetPheGlyPheAsnAsnPheValLeuLeuPheSerValIleProCysIle : 70 !|||:!::!! ! ! !:!!! !:!!:!!:!!! !|||:!!:!!||||||||| aLysLeuLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValProCysIle 232548 : GAAACTGTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATT : 232604 71 : LeuTyrIleValTyrGluGluLysAsnIleMetIleLysPheLysLeuValGlyLeuL : 90 |||!:!|||:!!!:!|||!!:! !!:!:!! ! !!:!.!.|||! !:!!|||! !: LeuPheIleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProM 232605 : CTGTTCATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTA : 232664 91 : euSerPheSerLeuIleAlaLeuIleLysTyrTrpThrLeuThrTyrArgLysProAr : 109 !!||| !! !|||!!:!.! !:!:!!.|||!! !||| ! !:! ! ! etSerHisPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAs 232665 : TGAGTCACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGA : 232721 110 : gIleLysAspCysIleGluGlnIleTrpIleAspTrpGluGlnValGluLeuHisGlu : 128 !||| !!|||:!:||||||:!: ||||||..!.!.|||:!! !! !! pIleLeuTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLysProVal 232722 : CATCCTCTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTC : 232778 129 : AspArgLysValMetLeuLysTyrGlyGlnIleGlyArgAsnLeuThrIleIleCysA : 148 !!||| ! :!!||||||||| !!!.!:!!:!!||||||::::!!.!! !|||..!| HisArgAspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaA 232779 : CATCGTGATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTG : 232838 149 : laValPheIleTyrThrGlyGlySerIlePheHisThrIleLeuGlnTyrLysIleGl : 167 || !!! !!!::!!||||||! !.!! ! !.!.! !:!! ! ! !:::!!:.! laPheCysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSe 232839 : CGTTTTGCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAG : 232895 168 : yThrPhe<->IleAspGluHisAsnArgThrIleLysProValValTyrProThrTyr : 185 !|||||| :!:! .!..!.!:! !:!!!!: ! |||:!! !! ! !! !||| rThrPheTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyr 232896 : CACGTTCTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTAC : 232952 186 : AsnAlaLeuPheAspValGlnLysSerProIleTyrGluLeuValTyrLeuLeuHisS : 205 !.. !|||.!.|||..!::! ||||||! !!|||:!!:!!!:!:!!|||!!.! ThrLysLeuMetAspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnC 232953 : ACGAAGCTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGT : 233012 206 : erIleCysGlyTyrIleMetTyrSerValThrAlaGlySerCysGlyLeuThrAlaLe : 224 !!:!!! !|||!:!|||:!! !!|||||||||!.!|||:!!||||||||| !|||:! ysLeuSerGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaVa 233013 : GTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGT : 233069 225 : uPheAlaThrHisAlaCysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeu : 243 !.!.|||! !|||||||||||||||:!::!!:!:|||!!::!!!:!|||:!!|||||| lLeuAlaMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeu 233070 : TCTAGCGATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTG : 233126 244 : IleHisGlyLysTyrThrLysAsnThrPheAsnLeuAsnThrArgLeuValLysIleV : 263 :!: !!!.!||| !:!!.!.! ! !! !.!.! !!:!|||! ! |||| ValAspAlaLysGlyGlnGluGluArgVal---AlaGlnArgLysLeuGlyPheIleV 233127 : GTGGACGCGAAAGGGCAGGAGGAGAGAGTC---GCGCAGAGGAAGTTAGGTTTCATCG : 233183 264 : alLysHisHisLeuArgIleLeuArgPheSerGlu >>>> Target Intron 1 : 275 ||:!!||||||||||||! !||||||!:!! !... 1315 bp alGluHisHisLeuArgThrLeuArgTyrLeuSer++ 233184 : TGGAGCATCATTTGCGTACATTAAGGTATTTGTCTgt..................... : 233221 276 : >>>> SerIleGluMetAlaLeuGlnGluLeuCysPheLeuGluCysIleGlySerT : 292 !:!||||||! !.!:!!.!. !:!!|||.!.:!!|||! :!!|||!!!| -+AsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuValGlyCysT 233222 : ....ggAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGATGCA : 234585 293 : hrPheLeuIleCysLeuLeuGluTyr{Ty} >>>> Target Intron 2 >>>> : 301 ||!!. !!!:|||:!!|||||||||{!!} 180 bp hrLeuAsnMetCysMetLeuGluTyr{**}-+ + 234586 : CGTTGAACATGTGCATGCTCGAGTAT{TA}tt.........................a : 234792 302 : {r}CysIleThrAspTrpGluLeuSerAsnThrIleSerLeuThrThrTyrThrMet : 319 { }|||||| ! !! :!! !!..::: ...|||.!!:!!|||..!!!: -{*}CysIleLeuThrSerGlnGluLysSerLysGluLysLeuAlaSerTyrValIle 234793 : a{A}TGTATTTTAACTTCTCAGGAAAAgtcgaaggaaaaattagCTTCATACGTCATC : 234846 320 : LeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluArgLeuM : 339 :!!! !:!:|||:!!||||||||||||||||||...|||||||||||||||! !|||! ValTyrValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuT 234847 : GTGTACGTGTCCATGACATTtaatatattcatattttgttACATCGGAGAGACGCTTA : 234906 340 : etGluLysSerSerSer : 344 |||:!! !.!!||| hrGluGlnValGlySer 234907 : CAGAGCAGGTAGGATCA : 234923 vulgar: AmOr61 14 344 . KQ414889.1 232432 234923 + 439 M 31 93 G 0 6 M 124 372 G 0 3 M 84 252 G 1 0 M 20 60 5 0 2 I 0 1311 3 0 2 M 26 78 S 0 2 5 0 2 I 0 176 3 0 2 S 1 1 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232433 234923 439 + . gene_id 5 ; sequence AmOr61 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232433 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232433 233218 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233219 233220 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233219 234533 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234532 234533 . + . intron_id 0 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 234534 234613 . + . KQ414889.1 exonerate:protein2genome:local exon 234534 234613 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234614 234615 . + . intron_id 2 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 234614 234793 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234792 234793 . + . intron_id 1 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 234794 234923 . + . KQ414889.1 exonerate:protein2genome:local exon 234794 234923 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232433 234923 439 + . alignment_id 5 ; Query AmOr61 ; Align 232433 15 93 ; Align 232532 46 372 ; Align 232907 170 252 ; Align 233159 255 60 ; Align 234534 275 78 ; Align 234795 302 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 430 Query range: 23 -> 370 Target range: 259772 -> 262012 24 : TyrIleThrLysHisAsnLysTrpIleLeuLysSerIleGlyIleTrpPro<-><->S : 41 |||! ! !:!! !|||::!|||.!!|||||| !!|||||| !|||||| | TyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerS 259773 : TATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCAT : 259830 42 : erValLeuLysSerValSerArgPheLeuProLysIleMetPheGlyPheAsnAsnPh : 60 || ! !! !!!:!!..!!:!.!!:!! !! |||:!!.!! !.!! ! !! erSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSe 259831 : CCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAG : 259887 61 : eValLeuLeuPheSerValIleProCysIleLeuTyrIleValTyrGluGluLysAsn : 79 !..!:!!||| !!!!!:!!|||||||||:!!|||:!!!!::!! !|||:!!:!!!:! rThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSer 259888 : TACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGT : 259944 80 : IleMetIleLysPheLysLeuValGlyLeuLeuSerPheSerLeuIleAlaLeuIleL : 99 :!: !!:||| |||:!!:!!|||! !|||!!! !!!!!!!:!!!.!! !|||! LeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleA 259945 : TTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTA : 260004 100 : ysTyrTrpThrLeuThrTyrArgLysProArgIleLysAspCysIleGluGlnIleTr : 118 !.||| |||||| !! ||| ! !||| ..!|||:!:|||!!.:!: snTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGl 260005 : ATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGA : 260061 119 : pIleAspTrpGluGlnValGluLeuHisGluAspArgLysValMetLeuLysTyrGly : 137 !! !||||||..! :!! ! !.!.:!!|||!:!!!.|||||||||!:!|||!.! uAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAla 260062 : GAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCG : 260118 138 : GlnIleGlyArgAsnLeuThrIleIleCysAlaValPheIleTyrThrGlyGlySerI : 157 :!!.!!|||||| !!:!!.!! ! !||||||!.!|||:!: ! !|||! ! ! LysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuC 260119 : AAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGT : 260178 158 : lePheHisThrIleLeuGlnTyrLysIleGlyThrPhe<->IleAspGluHisAsnAr : 175 !||| ! !:!! ! !! !..! !! !..!.!. :!:! .!..!.!..|| ysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrAr 260179 : GCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAG : 260235 176 : gThrIleLysProValValTyrProThrTyrAsnAlaLeuPheAspValGlnLysSer : 194 |! !:!! ! ! !:!! !! ! !!..!|||!!.! !|||.!.:!!|||.!. ! ||| gIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSer 260236 : GATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGT : 260292 195 : ProIleTyrGluLeuValTyrLeuLeuHisSerIleCysGlyTyrIleMetTyrSerV : 214 |||!!: !!|||:!!||| !:!!:!!!!.! !:!!! |||!:!|||:!! !!||| ProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerS 260293 : CCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGA : 260352 215 : alThrAlaGlySerCysGlyLeuThrAlaLeuPheAlaThrHisAlaCysGlyGlnIl : 233 !|||!.!|||! !! !.!!|||.!!|||:!!.!..!!.!!|||||||||||||||:! erThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLe 260353 : GCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTT : 260409 234 : eAspIleValIleAlaArgLeuAsnAspLeuIleHisGlyLysTyrThrLysAsnThr : 252 ::!!:!::!!!!:! ! !!:!!!..!!:!!!:!: !!! !..! !.!!:!!!.! ! uAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLys 260410 : GAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAA : 260466 253 : PheAsnLeuAsnThrArgLeuValLysIleValLysHisHisLeuArgIleLeuArgP : 272 !! ! !! !..!:!!! ! !||||||:!!|||||||||||| !|||! !! LysAlaProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeuThr* 260467 : AAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTCACGT : 260526 273 : heSerGluSerIleGluMetAlaLeuGlnGluLeuCysPheLeuGluCysIleGlySe : 291 ..! !! ! ! ! !:!!!:! !! ! !|||:!! :!!||||| **AspLeuPheAspIleThrPheValArg***ArgIlePheIleIleThrValGlySe 260527 : AAGATTTGTTTGATATTACTTTTGTACGATAAAGGATTTTTATAATTACGGTAGGATC : 260583 292 : rThrPheLeuIleCysLeu{Le} >>>> Target Intron 1 >>>> {u}Glu : 299 ||||...::: |||{:!} 1109 bp {!} rThrIleIle***LysLeu{Il}++ -+{e}Tyr 260584 : Tactataatttgaaaatta{at}gt.........................tg{a}tat : 261716 300 : TyrTyrCysIleThrAspTrpGluLeuSerAsnThrIleSerLeuThrThrTyrThrM : 319 :::::: ::: !!:|||! !..!:!!! ! !!:!|||:!!|||||| !| PhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheM 261717 : ttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCA : 261776 320 : etLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluArgLe : 338 ||:!!||||||:!!:!! !||||||:!!||||||:!!|||||||||||||||! !|| etMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLe 261777 : TGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACT : 261833 339 : uMetGluLys >>>> Target Intron 2 >>>> SerSerSerIleGlyLeuS : 348 |! !|||:!! 81 bp !!!|||!.!:!!||| ! uThrGluGln++ ++CysSerLysValGlyAspV 261834 : AACGGAACAGgt.........................agTGCTCGAAAGTTGGTGACG : 261944 349 : erCysPheMetIleAspTrpPheGlnLeuProThrLysThrIleHisAspLeuIleLe : 367 ! !!:!|||! !:!!|||!:! ! |||||| !|||!:!|||! !||||||||||| alValTyrMetThrAsnTrpTyrTyrLeuProAspLysSerIleLeuAspLeuIleLe 261945 : TTGTTTACATGACAAACTGGTATTATTTACCTGATAAAAGTATCCTTGATTTGATTTT : 262001 368 : uIleIleAla : 370 |||||||||| uIleIleAla 262002 : GATCATTGCA : 262012 vulgar: AmOr61 23 370 . KQ414889.1 259772 262012 + 430 M 17 51 G 0 6 M 129 387 G 0 3 M 128 384 S 0 2 5 0 2 I 0 1105 3 0 2 S 1 1 M 43 129 5 0 2 I 0 77 3 0 2 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259773 262012 430 + . gene_id 6 ; sequence AmOr61 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259773 260605 . + . KQ414889.1 exonerate:protein2genome:local exon 259773 260605 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260606 260607 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 260606 261714 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261713 261714 . + . intron_id 0 ; splice_site "tg" KQ414889.1 exonerate:protein2genome:local cds 261715 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261715 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262012 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262012 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259773 262012 430 + . alignment_id 6 ; Query AmOr61 ; Align 259773 24 51 ; Align 259830 41 387 ; Align 260220 170 384 ; Align 261716 299 129 ; Align 261926 342 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 428 Query range: 14 -> 344 Target range: 289708 -> 291488 15 : AsnLeuLysTyrLysGluAspIleAlaTyrIleThrLysHisAsnLysTrpIleLeuL : 34 ||| !:::|||:!! !|||||| !|||! !:!! ! ! |||||||||| AsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleLeuL 289709 : AACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCTTGA : 289766 35 : ysSerIleGlyIleTrpProSerValLeuLysSerValSer<-><-><->ArgPheLe : 50 || !!||||||!!:!::|||! !|||!!!!.. !!!.!||| ||| ysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgThrAl 289767 : AACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGC : 289823 51 : uProLysIleMetPheGlyPheAsnAsnPheValLeuLeuPheSerValIleProCys : 69 ! !! !:!::!!.!! ! ! ! !! :!!|||! !|||! !:!!:!!|||! ! aSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValProPhe 289824 : GTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCGTTC : 289880 70 : IleLeuTyrIleValTyrGluGluLysAsnIleMetIleLysPheLysLeuValGlyL : 89 ! !! !:!!:!!:!!!:!...!!:!!.:!!!!:! ! !!||| !:!!|||! SerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuGlyP 289881 : AGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCGGAC : 289940 90 : euLeuSerPheSerLeuIleAlaLeuIleLysTyrTrpThrLeuThrTyrArgLysPr : 108 !|||!!!|||!!!|||! !.!!!!!.!!||||||!! !!!!!:! !:! ! roLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGlySe 289941 : CGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGGTTC : 289997 109 : oArgIleLysAspCysIleGluGlnIleTrpIleAspTrpGluGlnValGluLeuHis : 127 ! !||| !|||:!::!!!!.||| !! !||||||:!!..!:!!... !.!. rAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAspGlu 289998 : AGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGACGAG : 290054 128 : GluAspArgLysValMetLeuLysTyrGlyGlnIleGlyArgAsnLeuThrIleIleC : 147 !!: !!||| :!!||||||!:!|||! ! !!!:.!!|||||||||! !! !:!:| AspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysLeuC 290055 : GATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAACTGT : 290114 148 : ysAlaValPheIleTyrThrGlyGlySerIlePheHisThrIleLeuGlnTyrLysIl : 166 |||||:!!|||:!:|||! !|||||| ! !!:!:!!|||:!!:!!! !! ysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPheSe 290115 : GCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTTCTC : 290171 167 : eGlyThrPheIleAspGluHisAsnArgThrIleLysProValValTyrProThrTyr : 185 !! ! !:!::!! !||| !||||||!:!|||:!!..!|||||| !||| rLysLysSerValAsn---GlyAsnValThrIleArgProLeuThrTyrProGlyTyr 290172 : GAAGAAGAGCGTGAAC---GGTAACGTGACTATCAGACCTCTAACTTATCCCGGTTAC : 290225 186 : AsnAlaLeuPheAspValGlnLysSerProIleTyrGluLeuValTyrLeuLeuHisS : 205 .!.! !!!!||||||||||||||||||||| ||||||:!!|||!:!! !:!!|||! GluGluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetHisC 290226 : GAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACT : 290285 206 : erIleCysGlyTyrIleMetTyrSerValThrAlaGlySerCysGlyLeuThrAlaLe : 224 !!:!!! !! ! |||! ! !:!:!!||| !!.!:!!! !.!!||||||.!!:! ysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIl 290286 : GTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGAT : 290342 225 : uPheAlaThrHisAlaCysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeu : 243 !||||||||||||.!!|||||||||||| ! ||| !! .!!||||||.!.|||||| ePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAspLeu 290343 : CTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTG : 290399 244 : IleHisGlyLysTyrThrLysAsnThrPheAsnLeuAsnThrArgLeuValLysIleV : 263 ! ! ! !! ! ! !.!.! ! ...:!!!:! !||||||!.! :!!| ThrLysArgGlyMetLeuLeuGluLys---GlyValSerAspArgLeuAlaValValV 290400 : ACAAAGAGAGGGATGCTGTTGGAGAAG---GGAGTGAGTGATCGTTTGGCGGTTGTTG : 290456 264 : alLysHisHisLeuArgIleLeuArgPheSerGluSerIleGluMetAlaLeuGlnGl : 282 ||!.. !|||:!!..!||||||!:!! ..!!!:!!! !..! :!! ! !.. alSerGlyHisValGluIleLeuLys***AspAsp***TyrArgTyrSerGlyValSe 290457 : TGAGCGGTCACGTGGAGATCTTGAAGTAAGATGATTGATACAGGTATTCAGGGGTGTC : 290513 283 : uLeuCysPheLeuGlu{C} >>>> Target Intron 1 >>>> {ys}IleGly : 290 .! !! !:: ! !{!} 655 bp { }|||! ! rArgLeuTrpGlyIle{L}++ ++{eu}IleVal 290514 : TCGTTTATGGGGAATA{T}gt.........................ag{TA}ATAGTA : 291192 291 : SerThrPheLeuIleCysLeuLeuGluTyrTyrCysIleThr >>>> Target In : 305 |||||| ! |||:!!||||||:!!|||||| !! !!:! ! 132 SerThrValLeuLeuCysLeuIleGluTyrLeuLeuMetMet++ 291193 : TCCACTGTGTTACTATGCTTGATCGAATATCTCTTAATGATGgt.............. : 291239 306 : tron 2 >>>> AspTrpGluLeuSerAsnThrIleSerLeuThrThrTyrThrMet : 319 bp !!:|||||| !|||:!!:!!|||.!!:!! !||||||..!! ++GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThr 291240 : ...........agGAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACT : 291411 320 : LeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluArgLeuM : 339 ||||||! !|||!!!||||||||||||.!.|||!!!||||||:!!||||||! !|||: LeuLeuThrSerPheThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuL 291412 : CTCCTCACTTCTTTCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTC : 291471 340 : etGluLysSerSerSer : 344 !:! !:!! !|||!!! euGlyGlnValSerThr 291472 : TTGGACAGGTAAGTACT : 291488 vulgar: AmOr61 14 344 . KQ414889.1 289708 291488 + 428 M 33 99 G 0 9 M 124 372 G 1 0 M 80 240 G 1 0 M 34 102 S 0 1 5 0 2 I 0 651 3 0 2 S 1 2 M 16 48 5 0 2 I 0 128 3 0 2 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289709 291488 428 + . gene_id 7 ; sequence AmOr61 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 289709 290531 . + . KQ414889.1 exonerate:protein2genome:local exon 289709 290531 . + . insertions 9 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 290532 290533 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 290532 291186 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 291185 291186 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 291187 291236 . + . KQ414889.1 exonerate:protein2genome:local exon 291187 291236 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291237 291238 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291237 291368 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 291367 291368 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 291369 291488 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291488 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289709 291488 428 + . alignment_id 7 ; Query AmOr61 ; Align 289709 15 99 ; Align 289817 48 372 ; Align 290189 173 240 ; Align 290429 254 102 ; Align 291189 289 48 ; Align 291369 305 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 414 Query range: 17 -> 276 Target range: 221360 -> 222143 18 : TyrLysGluAspIleAlaTyrIleThrLysHisAsnLysTrpIleLeuLysSerIleG : 37 |||||| !:!!:!: !! ! !..!:!! !:!:::|||||||||||| !!|||| TyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleG 221361 : TACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCG : 221418 38 : lyIleTrpProSerVal<-><->LeuLysSerValSerArgPheLeuProLysIleMe : 54 ||:!!||||||!:! ! :!!...!!!|||..!|||!:!||| ! !:!:!! lyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLeuIl 221419 : GTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCTGAT : 221475 55 : tPheGlyPheAsnAsnPheValLeuLeuPheSerValIleProCysIleLeuTyrIle : 73 : !! ! !! ! !! !:!!:!! !||| !:!!:!!||||||! !||||||:!: eAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyrVal 221476 : AAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTG : 221532 74 : ValTyrGluGluLysAsnIleMetIleLysPheLysLeuValGlyLeuLeuSerPheS : 93 :!! !|||! !:!!:!!:!! ! !!:!.!!||||||:!!|||! !|||||||||! IleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheC 221533 : ATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCT : 221592 94 : erLeuIleAlaLeuIleLysTyrTrpThrLeuThrTyrArgLysProArgIleLysAs : 112 !!:!!!!:|||!!!:!!|||||| !|||! ! ! !:!! ! !|||:::!! ysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGl 221593 : GCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGA : 221649 113 : pCysIleGluGlnIleTrpIleAspTrpGluGlnValGluLeuHisGluAspArgLys : 131 :|||||||||!::||| ||||||:!!.!.:!! ! ! !:!!|||!:! ! uCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLysAsp 221650 : GTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAGGAT : 221706 132 : ValMetLeuLysTyrGlyGlnIleGlyArgAsnLeuThrIleIleCysAlaValPheI : 151 :!!|||:!!:!! !!!.! .!!||||||...|||! !!!:||||||.!! !!|||! IleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheM 221707 : ATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCA : 221766 152 : leTyrThrGlyGlySerIlePheHisThrIleLeuGlnTyrLysIleGlyThrPhe<- : 170 !:|||!:!||| ...:::::: ! !:!!! !!:!!..:!:|||! !.!! etTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIlePr 221767 : TGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCC : 221823 171 : >IleAspGluHisAsnArgThrIleLysProValValTyrProThrTyrAsnAlaLeu : 188 .!.!!: ||| |||... |||:!!|||!:!||| !! !.. !:!! oAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPheIle 221824 : TGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATC : 221880 189 : PheAspValGlnLysSerProIleTyrGluLeuValTyrLeuLeuHisSerIleCysG : 208 !!|||..!!:! ! ||||||:!! !!|||:!!:!!!:!! !|||!!.! !!!:...| ValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaG 221881 : GTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGG : 221940 209 : lyTyrIleMetTyrSerValThrAlaGlySerCysGlyLeuThrAlaLeuPheAlaTh : 227 || !:!:|||:!!|||:!!|||:!!!.!:!!|||.!!|||..!|||:!!||||||.. lyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaVa 221941 : GTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGT : 221997 228 : rHisAlaCysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeuIleHisGly : 246 !|||||||||||||||!!:.!.:!::!!!!:::! !!|||!!. !!||||||:!!||| lHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsnGly 221998 : GCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGC : 222054 247 : LysTyrThrLysAsnThrPheAsnLeuAsnThrArgLeuValLysIleValLysHisH : 266 ::! .!! ! ! ! !|||:!!:!!! !|||:!!!.!|||||||||!!.!!.| Arg---AlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnH 222055 : CGG---GCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAAC : 222111 267 : isLeuArgIleLeuArgPheSerGluSerIle : 276 ||:!!|||||||||!:!!:! !...!!!||| isValArgIleLeuGlnTyrValArgCysIle 222112 : ACGTTCGAATATTGCAGTATGTACGTTGTATC : 222143 vulgar: AmOr61 17 276 . KQ414889.1 221360 222143 + 414 M 25 75 G 0 6 M 127 381 G 0 3 M 78 234 G 1 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221361 222143 414 + . gene_id 8 ; sequence AmOr61 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221361 222143 . + . KQ414889.1 exonerate:protein2genome:local exon 221361 222143 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221361 222143 414 + . alignment_id 8 ; Query AmOr61 ; Align 221361 18 75 ; Align 221442 43 381 ; Align 221826 170 234 ; Align 222060 249 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 406 Query range: 23 -> 304 Target range: 266637 -> 267558 24 : TyrIleThrLysHisAsnLysTrpIleLeuLysSerIleGlyIleTrpPro<-><->S : 41 |||! ! !:!! |||::!|||.!!|||||| !!|||||| !|||||| | TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuS 266638 : TACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGT : 266695 42 : erValLeuLysSerValSerArgPheLeuProLysIleMetPheGlyPheAsnAsnPh : 60 ||:!! !...!.!:!!..!|||.!!:!! !! ! !:!!.!!! !.!! ! !!! erLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCy 266696 : CACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTG : 266752 61 : eValLeuLeuPheSerValIleProCysIleLeuTyrIleValTyrGluGluLysAsn : 79 ! !:!!||||||!!!||||||||||||:!:!!!:!!:!!||| |||!!::!!!:! sSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSer 266753 : CTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGT : 266809 80 : IleMetIleLysPheLysLeuValGlyLeuLeuSerPheSerLeuIleAlaLeuIleL : 99 ||| ! ||| ! |||:!! !!|||! !|||||| !!!!!!!:!!!.! !|||! IleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleA 266810 : ATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTA : 266869 100 : ysTyrTrpThrLeuThrTyrArgLysProArgIleLysAspCysIleGluGlnIleTr : 118 !.||| |||||| ! |||!.. !..!|||:::! !|||:!!|||!!.!!: snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 266870 : ACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCA : 266926 119 : pIleAspTrpGluGlnValGluLeuHisGluAspArgLysValMetLeuLysTyrGly : 137 ! !||||||..! ||| !! ||||||!:!:!!|||||||||||| !!!.! nThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAla 266927 : AACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCG : 266983 138 : GlnIleGlyArgAsnLeuThrIleIleCysAlaValPheIleTyrThrGlyGlySerI : 157 ::!||||||||| !!:!!.!!|||.!!||||||!.!|||!!: ! !|||! ! ! ArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuG 266984 : AGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCG : 267043 158 : lePheHisThrIleLeuGlnTyrLysIleGlyThrPhe<->IleAspGluHisAsnAr : 175 !!:! !..!||| ! !!:!! !!: !||| ! :!!! !.!..!.!.!|| lyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrAr 267044 : GCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAG : 267100 176 : gThrIleLysProValValTyrProThrTyrAsnAlaLeuPheAspValGlnLysSer : 194 |! !:!! ! ! !:!! !! ! !!..!|||!!. !:!!.!!! |||.!.! ||| gIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSer 267101 : GATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGC : 267157 195 : ProIleTyrGluLeuValTyrLeuLeuHisSerIleCysGlyTyrIleMetTyrSerV : 214 |||! !!|||:!!||| !:!!! !!!.! !:!!! |||!:!|||:!! !!||| ProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerS 267158 : CCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGA : 267217 215 : alThrAlaGlySerCysGlyLeuThrAlaLeuPheAlaThrHisAlaCysGlyGlnIl : 233 !..!!.!|||:!!! !.!!|||.!!|||:!!||||||.!!|||||||||||||||:! erValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLe 267218 : GCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCT : 267274 234 : eAspIleValIleAlaArgLeuAsnAspLeuIleHisGlyLysTyrThrLysAsnThr : 252 :..!:!::!!!!: ! !!:!!!!.!!:!!!:!::!! !!... !!..|||! ! uSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLys 267275 : GAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAG : 267331 253 : PheAsnLeuAsnThrArgLeuValLysIleValLysHisHisLeuArgIleLeu{Ar} : 271 ! !! ! ! !!:!:!!! ! !:!!|||:!!||||||||||||:!!|||{!!} AsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se} 267332 : AACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG} : 267388 272 : >>>> Target Intron 1 >>>> {g}PheSerGluSerIleGluMetAlaLe : 280 69 bp {!}|||! !! ! !!||||||! !.!:! ++ ++{r}PheIleAlaArgIleGluSerValMe 267389 : gt.........................ag{C}TTCATAGCACGTATCGAAAGTGTAAT : 267484 281 : uGlnGluLeuCysPheLeuGluCysIleGlySerThrPheLeuIleCysLeuLeuGlu : 299 !...|||:!!||||||:!!|||! .!! !!!!|||.!. !||||||:!!|||... tSerGluIleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSer 267485 : GAGCGAAATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGC : 267541 300 : TyrTyrCysIleThr : 304 |||||| !:!!||| TyrTyrIleLeuThr 267542 : TATTATATCCTTACG : 267558 vulgar: AmOr61 23 304 . KQ414889.1 266637 267558 + 406 M 17 51 G 0 6 M 129 387 G 0 3 M 101 303 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266638 267558 406 + . gene_id 9 ; sequence AmOr61 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266638 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266638 267389 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267558 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267558 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266638 267558 406 + . alignment_id 9 ; Query AmOr61 ; Align 266638 24 51 ; Align 266695 41 387 ; Align 267085 170 303 ; Align 267460 272 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 400 Query range: 0 -> 271 Target range: 217105 -> 217924 1 : MetHisLeuThrThrLeuAsnLysAsnAsnCysLysValArgAsnLeuLysTyrLysG : 20 |||!!. ! !.!! !||||||.!..!.! ! !! !:!!! !:!:|||:::: MetGlnLysLeuAlaThrAsnLysGluGlnSerProArgThrAspTyrGluTyrGluL 217106 : ATGCAAAAACTTGCAACAAACAAGGAACAATCCCCCAGAACCGACTACGAgtacgaga : 217163 21 : luAspIleAlaTyrIleThrLysHisAsnLysTrpIleLeuLysSerIleGlyIleTr : 39 :::::||| !! !:!! |||:::|||:!:|||||| !!!!:|||:!!|| ysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTr 217164 : aaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTG : 217220 40 : pProSerValLeuLysSerVal<-><->SerArgPheLeuProLysIleMetPheGly : 56 ||||!:! !! !! !!!..! !!!:!.!!||| !|||:!:!!: !!.! pProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAla 217221 : GCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCC : 217277 57 : PheAsnAsnPheValLeuLeuPheSerValIleProCysIleLeuTyrIleValTyrG : 76 !!. ! !! !:!!:!! !||| ! !!:!!|||||| !:!!|||:!: !! !| LeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeuG 217278 : TTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCG : 217337 77 : luGluLysAsnIleMetIleLysPheLysLeuValGlyLeuLeuSerPheSerLeuIl : 95 ||! :!!:!!:!! !|||!!.|||||| !!|||! !|||! !|||!!!:!!!! luValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValMe 217338 : AAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGAT : 217394 96 : eAlaLeuIleLysTyrTrpThrLeuThrTyrArgLysProArgIleLysAspCysIle : 114 :|||!!!:!!||||||!:::!!|||! ! !!.!||| !! !|||:::!!:|||:!: tAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCysVal 217395 : GGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTG : 217451 115 : GluGlnIleTrpIleAspTrpGluGlnValGluLeuHisGluAspArgLysValMetL : 134 ..!::!||| ||||||..!.!.|||..!! !.!.:!!||||||:!!!.!|||: ArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArgGluAlaMetI 217452 : AGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGA : 217511 135 : euLysTyrGlyGlnIleGlyArgAsnLeuThrIleIleCysAlaValPheIleTyrTh : 153 !! ! !!!.!.!..!!||||||!!.|||..!:!!:!!|||.!! !!|||!!:|||!: leValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrSe 217512 : TAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAG : 217568 154 : rGlyGlySerIlePheHisThrIleLeuGlnTyrLysIleGlyThrPheIleAspGlu : 172 !||| ...:::::: ! !:!!! ! !!..:!:|||! !.!!:!!...||| rGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGlu 217569 : CggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAG : 217625 173 : His<->AsnArgThrIleLysProValValTyrProThrTyrAsnAlaLeuPheAspV : 191 :!! |||! !|||.!!! |||:!!|||!:!||| ! !!. !:!!.!!|||. AsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyrIleIleAspT 217626 : AATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATA : 217685 192 : alGlnLysSerProIleTyrGluLeuValTyrLeuLeuHisSerIleCysGlyTyrIl : 210 .!!:: ! !!!|||! !!|||:!!|||!:!!!!|||!!.! !|||..!||| !:! hrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLe 217686 : CTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTT : 217742 211 : eMetTyrSerValThrAlaGlySerCysGlyLeuThrAlaLeuPheAlaThrHisAla : 229 :|||:!!.!!:!!|||:!!!.!:!!|||.!!|||.!!||| !||||||..!|||||| uMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAla 217743 : GATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCC : 217799 230 : CysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeuIleHisGlyLysTyrT : 249 ||||||||||||!!::!::!!!!: ! !!|||.!. !!|||||| !!|||!:! CysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgAlaA 217800 : TGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGAGCGG : 217859 250 : hrLysAsnThrPheAsnLeuAsnThrArgLeuValLysIleValLysHisHisLeuAr : 268 !! !!:! ! !.!:!!:!! !|||:!!!.!!..||||||!..!!.|||:!!|| spMetSerAsp---ThrValAspGlyArgIleAlaSerIleValSerGlnHisValAr 217860 : ATATGAGCGAT---ACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCG : 217913 269 : gIleLeuArg : 271 |||||||!:! gIleLeuLys 217914 : GATATTAAAG : 217924 vulgar: AmOr61 0 271 . KQ414889.1 217105 217924 + 400 M 46 138 G 0 6 M 127 381 G 0 3 M 79 237 G 1 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217106 217924 400 + . gene_id 10 ; sequence AmOr61 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217106 217924 . + . KQ414889.1 exonerate:protein2genome:local exon 217106 217924 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217106 217924 400 + . alignment_id 10 ; Query AmOr61 ; Align 217106 1 138 ; Align 217250 47 381 ; Align 217634 174 237 ; Align 217871 254 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 390 Query range: 14 -> 271 Target range: 208185 -> 208962 15 : AsnLeuLysTyrLysGluAspIleAlaTyrIleThrLysHisAsnLysTrpIleLeuL : 34 ||| !!!.||||||.!.|||:!:::!!:!! !..!:::! ||| !|||! |||| AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 35 : ysSerIleGlyIleTrpPro<->SerValLeuLysSerValSerArgPheLeuProLy : 52 ||! !|||||| !|||||| |||:!! !:::||| !! !..! ! !! ! ! ysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHi 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCA : 208300 53 : sIleMetPheGlyPheAsnAsnPheValLeuLeu<->PheSerValIleProCysIle : 70 |||:!:!!...! ! !!:! ! !|||||| |||! !||||||||| ! ! sIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGly 208301 : TATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGC : 208357 71 : LeuTyrIleValTyrGluGluLysAsnIleMetIleLysPheLysLeuValGlyLeuL : 90 :!!!:! :!! !! !! :!!:!!.!! !:!!!!.|||:!! !.!! !| MetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaL 208358 : ATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTC : 208417 91 : euSerPheSerLeuIleAlaLeuIleLysTyrTrpThrLeuThrTyrArgLysProAr : 109 ||||||||! !:!!!!:|||!!!! |||||| !! !:!!||| !|||:!! ! euSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAs 208418 : TGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGA : 208474 110 : gIleLysAspCysIleGluGlnIleTrpIleAspTrpGluGlnValGluLeuHisGlu : 128 !|||::! ! |||:!!||| ! :!! ! !||||||..!.!.||||||! !.!.||| pIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGlu 208475 : CATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAG : 208531 129 : AspArgLysValMetLeuLysTyrGlyGlnIleGlyArgAsnLeuThrIleIleCysA : 148 |||||||||:!!|||||| ! !!!.!....!!!.!|||!!.|||! !:!:||||||! AspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysG 208532 : GACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCG : 208591 149 : laValPheIleTyrThrGlyGlySerIlePheHisThrIleLeuGlnTyrLysIleGl : 167 .!!.!|||!!:||| !||| ...:::::: ! !|||! ! !! !! lyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAs 208592 : GAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGA : 208648 168 : yThrPheIleAspGlu<->HisAsnArgThrIleLysProValValTyrProThrTyr : 185 !! ! !!:!!!!:||| !||| !||| !!:! !:!!|||||||||..! ! pLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValPro 208649 : CAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCT : 208705 186 : AsnAlaLeuPheAspValGlnLysSerProIleTyrGluLeuValTyrLeuLeuHisS : 205 !!. !:!!.!.||||||!:! ! ||||||:!: !!|||:!! !!||| !:!!!!.! LysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnL 208706 : AAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAAT : 208765 206 : erIleCysGlyTyrIleMetTyrSerValThrAlaGlySerCysGlyLeuThrAlaLe : 224 !:!:! |||!:!:!! :!!!:!:!!|||!.!|||:!!|||||||||.!!||||| euLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLe 208766 : TGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCT : 208822 225 : uPheAlaThrHisAlaCysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeu : 243 |.!!|||! !|||||||||||||||:!:.!.|||:!!!!::!! !!:!!.!. ! ||| uLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeu 208823 : GCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTG : 208879 244 : IleHisGlyLysTyrThrLysAsnThrPheAsnLeuAsnThrArgLeuValLysIleV : 263 :!! !!|||::! ! !:!!.!.! ! ||||||:!! !||||||!.!!!.|||| ValAspGlyArgGluAspGluGluLys---AsnLeuAspGlnArgLeuAlaAsnIleV 208880 : GTCGATGGACGGGAGGACGAGGAGAAG---AATTTGGATCAGAGGTTGGCTAATATCG : 208936 264 : alLysHisHisLeuArgIleLeuArg : 271 ||:!!!!.|||:!!|||:!::!!!:! alGluGlnHisValArgValIleLys 208937 : TGGAGCAGCATGTTCGAGTGATCAAG : 208962 vulgar: AmOr61 14 271 . KQ414889.1 208185 208962 + 390 M 26 78 G 0 3 M 23 69 G 0 3 M 109 327 G 0 3 M 80 240 G 1 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 208962 390 + . gene_id 11 ; sequence AmOr61 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208186 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208962 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208186 208962 390 + . alignment_id 11 ; Query AmOr61 ; Align 208186 15 78 ; Align 208267 41 69 ; Align 208339 64 327 ; Align 208669 173 240 ; Align 208909 254 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 367 Query range: 11 -> 274 Target range: 212836 -> 213631 12 : LysValArgAsnLeuLysTyrLysGluAspIleAlaTyrIleThrLysHisAsnLysT : 31 :!!|||..!:!!! !! |||:!!:!! ::: ! |||:::| GlnValGluAspCysThrTyrGluLysArgValAsnLeuSerIleProTrpAsnArgT 212837 : CAGGTCGAAGACTGTACCTACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTT : 212894 32 : rpIleLeuLysSerIleGlyIleTrpPro<-><->SerValLeuLysSerValSerAr : 48 ||:!!|||||| !!! |||:!:|||||| ||| !:!!..! !!:!!..!!: rpLeuLeuLysProThrGlyLeuTrpProAspLysSerTyrValSerProIleGluLy 212895 : GGCTTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAA : 212951 49 : gPheLeuProLysIleMetPheGlyPheAsnAsnPheValLeuLeuPheSerValIle : 67 ! !:!! !!::!:!::!: ! ! !! ! !! !:!!:!! !!:! !|||||| sAsnIleAlaArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIle 212952 : AAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATA : 213008 68 : ProCysIleLeuTyrIleValTyrGluGluLysAsnIleMetIleLysPheLysLeuV : 87 ||||||! !||||||:!: !! !!!:! !:::||||||... :::.!!:!!||| ProCysSerLeuTyrValPheLeuAspValGluAsnIlePheLysGluIleGluLeuP 213009 : CCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaagagaTCGAATTGT : 213068 88 : alGlyLeuLeuSerPheSerLeuIleAlaLeuIleLysTyrTrpThrLeuThrTyrAr : 106 !!|||:!!!!!:!!|||!!!:!! !|||||| |||||| :!!|||! ! !!. heGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHi 213069 : TCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCA : 213125 107 : gLysProArgIleLysAspCysIleGluGlnIleTrpIleAspTrpGluGlnValGlu : 125 ! ! !|||::: |||:!!|||!!.!!: !||||||:!!.!.:!! ! sGlyAspAspIleArgThrCysValGluHisMetLysTyrAspTrpLysAsnIleThr 213126 : CGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACG : 213182 126 : LeuHisGluAspArgLysValMetLeuLysTyrGlyGlnIleGlyArgAsnLeuThrI : 145 ! !.!.||||||!:!:!!:!!||| ! ! !!!.!....!!|||!:!!..:!!..!! HisGluGluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValT 213183 : CACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGA : 213242 146 : leIleCysAlaValPheIleTyrThrGlyGlySerIlePheHisThrIleLeuGlnTy : 164 !||||||||| !!|||!!:||||||||| !!!!.!!!:! ! !:!!:!!! ! hrIleCysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuValValProIl 213243 : CAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGAT : 213299 165 : rLysIleGlyThrPheIleAspGluHis<->AsnArgThrIleLysProValValTyr : 182 !!.. ! !! !.!.:!!! ||| !! ||| !|||.!!!:!! !:!!||| ! eSerAlaAspLysMetValAlaGluAspLeuAsnValThrPheArgGlnMetValVal 213300 : CAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTC : 213356 183 : ProThrTyrAsnAlaLeuPheAspValGlnLysSerProIleTyrGluLeuValTyrL : 202 |||..!! !.. !:!! !!||||||!:! ! ||||||:!: !!|||:!! !!!:!| ProValSerArgPheIleValAspValArgTyrSerProValAsnGluIlePhePheL 213357 : CCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCT : 213416 203 : euLeuHisSerIleCysGlyTyrIleMetTyrSerValThrAlaGlySerCysGlyLe : 221 ||:!!!!.! !|||..!||| :!:!!::!!:!!:!!.!!!.!! !:!!|||.!!|| euIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSerLe 213417 : TGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTT : 213473 222 : uThrAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValIleAlaArgLeu : 240 |.!!|||:!!||||||..!|||||||||||||||!!:! !|||:!!!!:::! !!||| uAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeu 213474 : GGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTG : 213530 241 : AsnAspLeuIleHisGlyLysTyrThrLysAsnThrPheAsnLeuAsnThrArgLeuV : 260 .!. !!|||||| !!|||!:! ! !! !!:!! ! |||:!!:!! !|||:!!! GluHisLeuIleAspGlyArgGluAspMetSerLys---AsnValAspAspArgIleA 213531 : GAACATTTGATAGACGGTAGAGAGGATATGAGCAAG---AATGTGGACGACAGAATCG : 213587 261 : alLysIleValLysHisHisLeuArgIleLeuArgPheSerGlu : 274 .! ||||||!!.!!.|||:!!|||||||||!:!!:: !||| laValIleValAsnGlnHisValArgIleLeuLysTrpValGlu 213588 : CGGTCATCGTGAACCAGCATGTGCGGATACTGAAGTGGGTGGAA : 213631 vulgar: AmOr61 11 274 . KQ414889.1 212836 213631 + 367 M 29 87 G 0 6 M 133 399 G 0 3 M 79 237 G 1 0 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212837 213631 367 + . gene_id 12 ; sequence AmOr61 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212837 213631 . + . KQ414889.1 exonerate:protein2genome:local exon 212837 213631 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212837 213631 367 + . alignment_id 12 ; Query AmOr61 ; Align 212837 12 87 ; Align 212930 41 399 ; Align 213332 174 237 ; Align 213569 254 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 365 Query range: 17 -> 270 Target range: 284505 -> 285285 18 : TyrLysGluAspIleAlaTyrIleThrLysHisAsnLysTrpIleLeuLysSerIleG : 37 !:: ! !||| !|||! !..!:!! |||:::|||.!!|||||| !!|||| TrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleG 284506 : TGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTG : 284563 38 : lyIleTrpProSerValLeu<-><->LysSerValSerArgPheLeuProLysIleMe : 54 ||:!!|||||| ! !||| ! !!!:!!..!!:!.!! ! !! !:!!:! lyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLe 284564 : GCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCT : 284620 55 : tPheGlyPheAsnAsnPheValLeuLeuPheSerValIleProCysIleLeuTyrIle : 73 : !.!!!:! !|||:!!:!! !||| !:!!:!!|||||| !|||! !! ! uAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThr 284621 : CGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACA : 284677 74 : ValTyrGluGluLys<->AsnIleMetIleLysPheLysLeuValGlyLeuLeuSerP : 92 ||| !!!::!!! :!!:!! ! |||.!!|||:!!:!!|||! !||||||| ValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerP 284678 : GTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTT : 284737 93 : heSerLeuIleAlaLeuIleLysTyrTrpThrLeuThrTyrArgLysProArgIleLy : 111 ||!!!:!!!!:||| !|||||||||!::! !|||! !! ||| !!:!||| heCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGl 284738 : TCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGG : 284794 112 : sAspCysIleGluGlnIleTrpIleAspTrpGluGlnValGluLeuHis<-><-><-> : 128 .!.|||:!::!!.!.||| ! ||||||...! ..! ! !||| yGlnCysValLysAspIleArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGlu 284795 : CCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaa : 284851 129 : GluAspArgLysValMetLeuLysTyrGlyGlnIleGlyArgAsnLeuThrIleIleC : 147 |||:::|||::::::||| ! ! !!.!::!|||||||||::!|||.!!|||.!!| GluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheC 284852 : gaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCT : 284911 148 : ysAlaValPheIleTyrThrGlyGlySerIlePheHisThrIleLeuGlnTyrLysIl : 166 |||||! !|||!!:|||:!!||||||! !.!!!:! !|||:!::!!! !! ! ysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysTh 284912 : GCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCAC : 284968 167 : eGlyThrPheIleAspGluHisAsnArgThrIleLysProValValTyrProThrTyr : 185 !! ! ! ! !!|||..!|||:!:!:! !! !!.!!:!|||! !||| rValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyr 284969 : AGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTAT : 285025 186 : AsnAlaLeuPheAspValGlnLysSerProIleTyrGluLeuValTyrLeuLeuHisS : 205 ..!!.!|||.!!||| !!::! |||||| !:!|||:!!||| ! !!!:!!!!.! ArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnC 285026 : CGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAAT : 285085 206 : erIleCysGlyTyrIleMetTyrSerValThrAlaGlySerCysGlyLeuThrAlaLe : 224 !!:!:..!!.!!:!:!!!!:||||||||||||!.!|||:!!|||.!!|||.!!|||:! ysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaVa 285086 : GCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGT : 285142 225 : uPheAlaThrHisAlaCysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeu : 243 !|||!.!! !|||!.!|||||||||.!! |||:!!:!:.!!!:!|||:!! ! ||| lPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeu 285143 : GTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTC : 285199 244 : IleHisGly<->LysTyrThrLysAsnThrPheAsnLeuAsnThrArgLeuValLysI : 262 :!! !!||| ||| ! !|||... ! !!..! !.!. !||||||! ! ! | ValAspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspI 285200 : GTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATA : 285259 263 : leValLysHisHisLeuArgIleLeu : 270 ||:!!:!!|||||||||!:!|||||| leIleGluHisHisLeuLysIleLeu 285260 : TCATCGAGCATCATCTGAAGATACTG : 285285 vulgar: AmOr61 17 270 . KQ414889.1 284505 285285 + 365 M 26 78 G 0 6 M 35 105 G 0 3 M 49 147 G 0 9 M 119 357 G 0 3 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284506 285285 365 + . gene_id 13 ; sequence AmOr61 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284506 285285 . + . KQ414889.1 exonerate:protein2genome:local exon 284506 285285 . + . insertions 21 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284506 285285 365 + . alignment_id 13 ; Query AmOr61 ; Align 284506 18 78 ; Align 284590 44 105 ; Align 284698 79 147 ; Align 284854 128 357 ; Align 285214 247 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 344 Query range: 17 -> 270 Target range: 278558 -> 279338 18 : TyrLysGluAspIleAlaTyrIleThrLysHisAsnLysTrpIleLeuLysSerIleG : 37 !::!!. !||| !|||! !..!:!! |||:::|||.!!|||||| !!|||| TrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleG 278559 : TGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTG : 278616 38 : lyIleTrpProSerValLeu<-><->LysSerValSerArgPheLeuProLysIleMe : 54 ||:!!|||||| ! !||| ! !!!:!!..!!:!.!! ! !! !:!!:! lyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLe 278617 : GCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCT : 278673 55 : tPheGlyPheAsnAsnPheValLeuLeuPheSerValIleProCysIleLeuTyrIle : 73 : !.!!!:! !|||:!!:!! !||| !:!!:!!|||||| !|||! !! ! uAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThr 278674 : CGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACA : 278730 74 : ValTyrGluGluLys<->AsnIleMetIleLysPheLysLeuValGlyLeuLeuSerP : 92 ||| !!!::!!! :!!:!! ! |||.!!|||:!!:!!|||! !||||||| ValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerP 278731 : GTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTT : 278790 93 : heSerLeuIleAlaLeuIleLysTyrTrpThrLeuThrTyrArgLysProArgIleLy : 111 ||!!! !!!:||| !|||||||||!::! !|||! !! ||| !!:!||| heCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGl 278791 : TCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGG : 278847 112 : sAspCysIleGluGlnIleTrpIleAspTrpGlu<-><-><->GlnValGluLeuHis : 127 ! |||:!:.!..!.||| ! ! ||||||... ..! !... ... yLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGlu 278848 : CAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaa : 278904 128 : GluAspArgLysValMetLeuLysTyrGlyGlnIleGlyArgAsnLeuThrIleIleC : 147 |||:::|||::::::||| ! ! !!.!::!|||||||||::!|||.!!|||.!! GluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheS 278905 : gaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCA : 278964 148 : ysAlaValPheIleTyrThrGlyGlySerIlePheHisThrIleLeuGlnTyrLysIl : 166 !!|||! !|||!!:|||:!!|||||| !.!!!:! !.!!:!::!!! !! erAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAl 278965 : GCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGC : 279021 167 : eGlyThrPheIleAspGluHisAsnArgThrIleLysProValValTyrProThrTyr : 185 !! ! ! ! !!|||..!|||:!:!:! !! !!.!!:!|||! !||| aValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyr 279022 : AGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTAT : 279078 186 : AsnAlaLeuPheAspValGlnLysSerProIleTyrGluLeuValTyrLeuLeuHisS : 205 ..!!.!|||.!!||| !!::! |||||| !:!|||:!!||| ! !!!:!!!!.! ArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnC 279079 : CGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAAT : 279138 206 : erIleCysGlyTyrIleMetTyrSerValThrAlaGlySerCysGlyLeuThrAlaLe : 224 !!:!:..!!.!!:!:!!:!:||||||||||||!.!|||:!!|||.!!|||! !|||:! ysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaVa 279139 : GCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGT : 279195 225 : uPheAlaThrHisAlaCysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeu : 243 !|||!.!! !|||!.!|||||||||.!! |||:!!:!:.!!!:!|||:!! ! ||| lPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeu 279196 : GTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTC : 279252 244 : IleHisGly<->LysTyrThrLysAsnThrPheAsnLeuAsnThrArgLeuValLysI : 262 ||| !!||| ||| ! !|||!:! ! !!..! !.!. !||||||! ! ! | IleAspGlyValLysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspI 279253 : ATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATA : 279312 263 : leValLysHisHisLeuArgIleLeu : 270 ||:!!:!!|||||||||!:!|||||| leIleGluHisHisLeuLysIleLeu 279313 : TCATCGAGCATCATCTGAAGATACTG : 279338 vulgar: AmOr61 17 270 . KQ414889.1 278558 279338 + 344 M 26 78 G 0 6 M 35 105 G 0 3 M 44 132 G 0 9 M 124 372 G 0 3 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278559 279338 344 + . gene_id 14 ; sequence AmOr61 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278559 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278559 279338 . + . insertions 21 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278559 279338 344 + . alignment_id 14 ; Query AmOr61 ; Align 278559 18 78 ; Align 278643 44 105 ; Align 278751 79 132 ; Align 278892 123 372 ; Align 279267 247 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 325 Query range: 8 -> 271 Target range: 274335 -> 275136 9 : AsnAsnCysLysValArgAsnLeuLysTyrLysGluAspIleAla<->TyrIleThrL : 27 ||||||||| !:!!!.! ! ! !! !!:..!:!!::! |||! ! !: AsnAsnCysAlaIleAsnValThrAlaAsnPheAspSerLeuSerAspTyrSerLeuG 274336 : AACAACTGTGCGATAAACGTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGC : 274393 28 : ysHisAsnLysTrpIleLeuLysSerIleGlyIleTrpPro<-><->SerValLeuLy : 44 !! |||::!|||.!!|||||| !!|||||| |||||| ||| ! !! lnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaSerProThrTh 274394 : AATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCAC : 274450 45 : sSerValSerArgPheLeuProLysIleMetPheGlyPheAsnAsnPheValLeuLeu : 63 !!.! !!..!|||.!!||| !! ! ::::::... ... !!! ! !!:!!||| rLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeu 274451 : GAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTGCTTCATACTC : 274507 64 : PheSerValIleProCysIleLeuTyrIleValTyrGluGluLysAsnIleMetIleL : 83 ! !!!!||||||||| !!|||!!!:!!|||:!! ! !!!::!!!:!:!! :!:| SerThrValIleProSerIlePheHisIleIleLeuValAspGluSerLeuHisLeuL 274508 : TCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGA : 274567 84 : ysPheLysLeuValGlyLeuLeuSerPheSerLeuIleAlaLeuIleLysTyrTrpTh : 102 ||.!.||||||:!!|||! !|||.!! !!!!!!!|||!.! !|||!!.||| || ysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrTh 274568 : AGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCAC : 274624 103 : rLeuThrTyrArgLysProArgIleLysAspCysIleGluGlnIleTrpIleAspTrp : 121 |||| ! |||!.. !..!|||:::! !|||:!:|||!!.!!: ! !|||||| rLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrp 274625 : GCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGG : 274681 122 : GluGlnValGluLeuHisGluAspArgLysValMetLeuLysTyrGlyGlnIleGlyA : 141 ..! ||| !! ||||||!:!:!!|||||||||||| !!!.!:!!||||||| ArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyA 274682 : AGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTC : 274741 142 : rgAsnLeuThrIleIleCysAlaValPheIleTyrThrGlyGlySerIlePheHisTh : 160 || !!:!!.!!|||.!!||||||!.!|||!!: ! !|||! ! ! !!:! !.. rgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysVa 274742 : GTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGT : 274798 161 : rIleLeuGlnTyrLysIleGlyThrPhe<->IleAspGluHisAsnArgThrIleLys : 178 !||| ! !!:!! !!: !||| !! :!!! .!..!.!.!||||||:!: ! lIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrArgThrValHis 274799 : GATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCAT : 274855 179 : ProValValTyrProThrTyrAsnAlaLeuPheAspValGlnLysSerProIleTyrG : 198 !:!! !! ! !.!!|||!!. !:!! !!! |||.!.! !||||||! !!| MetLeuProCysLysAlaTyrLysLysIleValAlaValAspThrSerProThrAsnG 274856 : ATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACG : 274915 199 : luLeuValTyrLeuLeuHisSerIleCysGlyTyrIleMetTyrSerValThrAlaGl : 217 ||:!!||| ! !! !!!.! !:!:! |||!:!|||:!! !!||| !.!!!.!|| luIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerSerAlaValGl 274916 : AGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGG : 274972 218 : ySerCysGlyLeuThrAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleVal : 236 |:!!! !.!!|||.!!|||:!!||||||.!!||||||! !||||||:!:..!:!::!! yAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeu 274973 : CGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTG : 275029 237 : IleAlaArgLeuAsnAspLeuIleHisGlyLysTyrThrLysAsnThrPheAsnLeuA : 256 !!: ! !!:!!!.!!!:!!!:!::!! !... :::||| MetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsnLysAsnValTyrP 275030 : ATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatt : 275089 257 : snThrArgLeuValLysIleValLysHisHisLeuArgIleLeuArg : 271 ::!..!:!!! ! !:!!|||:!!||||||||||||:!!|||||| heSerGluIleGlyValValValGluHisHisLeuArgValLeuArg 275090 : tcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTCAGG : 275136 vulgar: AmOr61 8 271 . KQ414889.1 274335 275136 + 325 M 15 45 G 0 3 M 17 51 G 0 6 M 129 387 G 0 3 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274336 275136 325 + . gene_id 15 ; sequence AmOr61 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274336 275136 . + . KQ414889.1 exonerate:protein2genome:local exon 274336 275136 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274336 275136 325 + . alignment_id 15 ; Query AmOr61 ; Align 274336 9 45 ; Align 274384 24 51 ; Align 274441 41 387 ; Align 274831 170 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 314 Query range: 13 -> 300 Target range: 194141 -> 196381 14 : ArgAsnLeuLysTyrLysGluAspIleAlaTyrIleThrLysHisAsnLysTrpIleL : 33 ||||||:!!!!.|||||| !|||! !! !||| !..!::! ||| !:!!| ArgAsnValAsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuL 194142 : CGCAACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTC : 194199 34 : euLysSerIleGlyIleTrpProSerValLeuLysSerValSerArgPheLeuProLy : 52 ||! ! !!|||||||||||||||!!!! ! !... ! !..!||| !!! !! ! euThrProIleGlyIleTrpProArgGluAspSerLeuArgAspArgValArgLeuPh 194200 : TAACACCGATCGGTATCTGGCCAAGGGAGGATTCTCTTCGCGACAGAGTCCGACTGTT : 194256 53 : sIleMetPheGlyPheAsnAsnPheValLeuLeuPheSerValIleProCysIleLeu : 71 !... !||| ! ! ! !:!!:!!! !||| !:!!:!!||| !:!::!! eAlaGlnThrGlyValValPheAlaLeuMetCysPheLeuLeuValProHisValIle 194257 : CGCTCAAACTGGCGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATC : 194313 72 : TyrIleValTyrGluGluLysAsnIleMetIleLysPheLysLeuValGlyLeuLeuS : 91 |||! ! !!:!!!: :!!:!!:!:! !! ! .!.|||:!!:!!!.! !! ! TyrThrTyrPheAspCysGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnV 194314 : TACACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAG : 194373 92 : erPheSerLeuIleAlaLeuIleLysTyrTrpThrLeuThrTyrArgLysProArgIl : 110 !|||||||||:!:|||:!!||||||!:!||||||:!!! ! !.!!:! !..!|| alPheSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnArgLysGluIl 194374 : TGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGAT : 194430 111 : eLysAspCysIleGluGlnIleTrpIleAspTrpGluGlnValGluLeuHisGluAsp : 129 |!:! !|||:!: !:!!!!: !! .!.!::..!.!.||||||! !.!.|||||| eArgPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCysGluGluAsp 194431 : CAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGAT : 194487 130 : ArgLysValMetLeuLysTyrGlyGlnIleGlyArgAsnLeuThrIleIleCysAlaV : 149 |||:!!|||||| !!!.! !!.!:!!||||||||| !!!!|||! !:!:! ! !! ArgGlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuG 194488 : CGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGG : 194547 150 : alPheIleTyrThrGlyGlySerIlePheHisThrIleLeuGlnTyrLysIleGlyTh : 168 !.!! !||| !|||!.!! ! !:!|||! !||||||! ! ! ! !! lyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluAr 194548 : GACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAG : 194604 169 : rPheIleAspGluHisAsnArgThrIleLysProValValTyrProThrTyrAsnAla : 187 !.!!:!! ! ||| !!|||!!!||| ! !|||:!! !||| !!:! !! !!!.! gIleValLysGluAspAsnSerThrGlnIleProLeuProTyrLeuSerAsnTyrVal 194605 : GATTGTCAAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTT : 194661 188 : LeuPheAspValGlnLysSerProIleTyrGluLeuValTyrLeuLeuHisSerIleC : 207 !!!|||! :!!:!! ! |||||||||||||||:!!..!!:!:!!! !!!.! !:!: PhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerGlnIleLeuI 194662 : TTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGA : 194721 208 : ysGlyTyrIleMetTyrSerValThrAlaGlySerCysGlyLeuThrAlaLeuPheAl : 226 !.!! !|||!!:! |||..!!.!..!|||! !! !.!!|||..!||| !.!! leSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIl 194722 : TTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTAT : 194778 227 : aThrHisAlaCysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeuIleHis : 245 !! !|||..!|||||| !.!!!!::!:..!! ! !|||:!!.!. !:!! eMetHisCysCysGlyLeuPheGluValThrSerArgArgMetGluThrIle------ 194779 : TATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGATGGAGACTATT------ : 194832 246 : GlyLysTyrThrLysAsnThrPheAsnLeuAsnThrArgLeuValLysIleValLysH : 265 ! !..! !.! ! :!!:!!... !|||||| ! ! :!!|||:!! ------SerValProThrGlyLysAspIleArgGlyArgLeuArgAspValValGlnP 194833 : ------TCTGTGCCCACTGGGAAGGATATTCGGGGTAGACTTAGGGACGTCGTTCAGT : 194883 266 : isHisLeuArgIleLeu{Ar} >>>> Target Intron 1 >>>> {g}PheSe : 273 !||||||!:! !:!!{!:} 1391 bp {!}|||:! heHisLeuLysAlaIle{Ly}++ ++{s}PheAl 194884 : TTCATCTGAAAGCAATT{AA}gt.........................ag{a}tTCGC : 196298 274 : rGluSerIleGluMetAlaLeuGlnGluLeuCysPheLeuGluCysIleGlySerThr : 292 !|||! !||||||! ||||||.!. :!!! !.!.! !||| :!!|||!!!||| aGluMetIleGluLysAlaLeuAsnIleValPheLeuSerGluMetLeuGlyCysThr 196299 : TGAAATGATCGAGAAAGCACTGAACATCGTGTTTCTATCAGAGATGCTTGGCTGCACT : 196355 293 : PheLeuIleCysLeuLeuGluTyr : 300 .!!:!!||||||!!!||||||||| IleIleIleCysPheLeuGluTyr 196356 : ATCATCATATGTTTCCTGGAATAC : 196381 vulgar: AmOr61 13 300 . KQ414889.1 194141 196381 + 314 M 230 690 G 4 0 M 23 69 S 0 2 5 0 2 I 0 1387 3 0 2 S 1 1 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194142 196381 314 + . gene_id 16 ; sequence AmOr61 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 194142 194902 . + . KQ414889.1 exonerate:protein2genome:local exon 194142 194902 . + . insertions 0 ; deletions 4 KQ414889.1 exonerate:protein2genome:local splice5 194903 194904 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 194903 196293 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 196292 196293 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 196294 196381 . + . KQ414889.1 exonerate:protein2genome:local exon 196294 196381 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194142 196381 314 + . alignment_id 16 ; Query AmOr61 ; Align 194142 14 690 ; Align 194832 248 69 ; Align 196295 272 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 294 Query range: 2 -> 271 Target range: 236789 -> 237599 3 : LeuThrThrLeuAsnLysAsnAsnCysLysValArgAsnLeuLysTyrLysGluAspI : 22 :!!..!|||:!!!:!!!.:!!!!. ! !|||! !.!.:!!!!. ! ! ..!! ValValThrMetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerS 236790 : GTGGTCACGATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCA : 236847 23 : leAlaTyrIleThrLysHisAsnLysTrpIleLeuLysSerIleGlyIleTrpProSe : 41 !! !|||! ! !:!! |||::!||| :!!||||||||||||! !||||||.. erAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGl 236848 : GCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACA : 236904 42 : rValLeuLysSerValSerArgPheLeuProLysIleMetPheGlyPheAsnAsnPhe : 60 ! !!! !..!!:!:!!..!||| !:!! !!::!|||:!: !! !.!! ! !! ! nPheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThr 236905 : GTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACC : 236961 61 : ValLeuLeuPheSerValIleProCysIleLeuTyrIleValTyrGluGluLysAsnI : 80 !.!:!!|||||||||:!!||||||||| |||:!!:!!:!! |||:!! !!.!. AlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrP 236962 : GCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTT : 237021 81 : leMetIleLysPheLysLeuValGlyLeuLeuSerPheSerLeuIleAlaLeuIleLy : 99 !! ! ||| ! |||:!!:!!|||! !|||||| !!!!:!!.!!..!:!!|||!. heTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSe 237022 : TCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAG : 237078 100 : sTyrTrpThrLeuThrTyrArgLysProArgIleLysAspCysIleGluGlnIleTrp : 118 .||| ! !||| ! |||::: !! !|||::: !!! !.!!.!.!!.!!: ! rTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGlu 237079 : TTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAG : 237135 119 : IleAspTrpGluGlnValGluLeuHisGluAspArgLysValMetLeuLysTyrGlyG : 138 ! !||||||..! !..! ||| ::::::|||||||||||||||!.!: ThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaL 237136 : ACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGA : 237195 139 : lnIleGlyArgAsnLeuThrIleIleCysAlaValPheIleTyrThrGlyGlySerIl : 157 !!.!!.!!||| !! !.!!||| !|||.!!:!!||||||:!! !||| ! ! ysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGl 237196 : AATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGG : 237252 158 : ePheHisThrIleLeuGlnTyrLysIleGlyThrPheIleAspGluHisAsnArgThr : 176 !!:! !..!!!: ! !! !! ! !..! !!:!:! !! !:!!!!.! !||| yTyrCysValMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThr 237253 : ATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACG : 237309 177 : IleLysProValVal<->TyrProThrTyrAsnAlaLeuPheAspValGlnLysSerP : 195 ||| !! !|||:!! ! |||! !|||!!.!.!|||.!! |||.!.! !!:! IleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnT 237310 : ATCTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATA : 237369 196 : roIleTyrGluLeuValTyrLeuLeuHisSerIleCysGlyTyrIleMetTyrSerVa : 214 !!!!: !!!!::!!||| !|||! !!!.! !:!!! !|||!:!||| ! !!!:! hrMetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSe 237370 : CTATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAG : 237426 215 : lThrAlaGlySerCysGlyLeuThrAlaLeuPheAlaThrHisAlaCysGlyGlnIle : 233 !.!! !.!! ! .!!||||||::! !.!..!!:!!||||||! !||||||:!: rAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeu 237427 : TGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTG : 237483 234 : AspIleValIleAlaArgLeuAsnAspLeuIleHisGlyLysTyrThrLysAsnThrP : 253 ..!:!:|||!!: ! !:!!.!.|||!!!:!: !! ! ! !!:!...! ! SerValValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysA 237484 : AGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGG : 237543 254 : heAsnLeuAsnThrArgLeuValLysIleValLysHisHisLeuArgIleLeuArg : 271 !:!!! ! ! !..!:!! !! !||||||:!!.!.|||||||||:!:|||!:! spAspHisPheAspGluIleProThrIleValGluGluHisLeuArgValLeuLys 237544 : ACGATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAG : 237599 vulgar: AmOr61 2 271 . KQ414889.1 236789 237599 + 294 M 179 537 G 0 3 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236790 237599 294 + . gene_id 17 ; sequence AmOr61 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236790 237599 . + . KQ414889.1 exonerate:protein2genome:local exon 236790 237599 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 236790 237599 294 + . alignment_id 17 ; Query AmOr61 ; Align 236790 3 537 ; Align 237330 182 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 270 Query range: 8 -> 271 Target range: 256607 -> 257405 9 : AsnAsnCysLysValArgAsnLeuLysTyrLysGluAspIleAlaTyrIleThrLysH : 28 |||.!.! ! ||| !!!. !!!.!:!|||... !!! !! !|||! ! !:!! AsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerLeuGlnL 256608 : AACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTCTCCAGT : 256665 29 : isAsnLysTrpIleLeuLysSerIleGlyIleTrpPro<-><->SerValLeuLysSe : 45 |||::!|||.!!|||||| !!|||||| !|||||| ||| ! !! !!! euAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerThrThrTh 256666 : TGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCACTACAAC : 256722 46 : rValSerArgPheLeuProLysIleMetPheGlyPheAsnAsnPheValLeuLeuPhe : 64 !:!!..!||| !:!! !!! :!!:!! ! ! !! ! !! ! !:!!|||||| rLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIleLeuPhe 256723 : CCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTC : 256779 65 : SerValIleProCysIleLeuTyrIleValTyrGluGluLysAsnIleMetIleLysP : 84 !!!:!!|||||||||:!:|||:!!:!! !! !!!:!!: ! !:!.!! :::||| ThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrMetLysV 256780 : ACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAcatgaaag : 256839 85 : heLysLeuValGlyLeuLeuSerPheSerLeuIleAlaLeuIleLysTyrTrpThrLe : 103 ||| |||! !:!!||| !!!!:!!|||::!! ! !!!.||| ! !|| alLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrThrLeuLe 256840 : tgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACACGTTGCT : 256896 104 : uThrTyrArgLysProArgIleLysAspCysIleGluGlnIleTrpIleAspTrpGlu : 122 | !! !:! ! ! !|||::: !!|||:!!|||!!.||| ! ||||||..! uLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAspTrpArg 256897 : GTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGA : 256953 123 : GlnValGluLeuHisGluAspArgLysValMetLeuLysTyrGlyGlnIleGlyArgA : 142 ..!|||..! !.!.:!!|||!:!:!!||||||:!!||| !!!.!::!.!!|||||| MetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheGlyArgT 256954 : ATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTT : 257013 143 : snLeuThrIleIleCysAlaValPheIleTyrThrGlyGlySerIlePheHisThrIl : 161 !!:!!.!!! !.!!||||||!.!.!!!!: ! !:!||| ||| ..! yrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePheValSe 257014 : ACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttcttcgtGTC : 257070 162 : eLeuGlnTyrLysIleGlyThrPheIleAspGluHisAsnArgThrIleLysProVal : 180 ! ! ! !!.! ! !! !.!! !! ! !:!!.!.! !|||||| !! !||| rSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleValArgVal 257071 : GTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTGCGAGTG : 257127 181 : ValTyrProThr<->TyrAsnAlaLeuPheAspValGlnLysSerProIleTyrGluL : 199 :!! ! !||| |||!!. !|||!!.:!!|||.!.:!!||||||! !!|||: LeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrAsnGluI 257128 : CTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGA : 257187 200 : euValTyrLeuLeuHisSerIleCysGlyTyrIleMetTyrSerValThrAlaGlySe : 218 !!||| !!!!:!!!!.!!! ! ..! !||| ! !!!! !|||!.!.!!! leValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrValSerIl 257188 : TCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAGTAT : 257244 219 : rCysGlyLeuThrAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValIle : 237 !! !.!!|||.!!|||:!!|||||||||||||||! !||||||:!: !:!::!!!!: ePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrValLeuMet 257245 : ATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATG : 257301 238 : AlaArgLeuAsnAspLeuIleHisGlyLysTyrThrLysAsnThrPheAsnLeuAsnT : 257 :!! !!:!!!..!!:!!!:!::!!! !..! !.!:::... !! SerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheProPheL 257302 : TCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttcctttCA : 257361 258 : hrArgLeuValLysIleValLysHisHisLeuArgIleLeuArg : 271 !!:!:!!! ! !||||||:!!||||||||||||:!:|||||| ysGlnIleGlyValIleValGluHisHisLeuArgValLeuArg 257362 : AGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTGAGG : 257405 vulgar: AmOr61 8 271 . KQ414889.1 256607 257405 + 270 M 32 96 G 0 6 M 144 432 G 0 3 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256608 257405 270 + . gene_id 18 ; sequence AmOr61 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256608 257405 . + . KQ414889.1 exonerate:protein2genome:local exon 256608 257405 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256608 257405 270 + . alignment_id 18 ; Query AmOr61 ; Align 256608 9 96 ; Align 256710 41 432 ; Align 257145 185 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 264 Query range: 280 -> 401 Target range: 286806 -> 287243 281 : GlnGluLeuCysPheLeuGluCysIleGlySerThrPheLeuIleCysLeuLeuGluT : 300 .!.!!:||||||!:!! !.!. !:!! !:!!! !.!! !.!! !:!!! !..!! AspAspLeuCysTyrTyrHisThrValMetAlaIleIleAlaPheValMetTyrSerL 286807 : GACGACTTGTGTTATTACCATACTGTAATGGCAATAATTGCATTCGTCATGTACTCGT : 286864 301 : yrTyrCysIleThrAspTrpGluLeuSerAsnThrIleSerLeuThrThrTyrThrMe : 319 ! !.!! !!!:||||||! !|||.!.||||||.!! !! !|||||| !! euSerValPhe***GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysTh 286865 : TGTCAGTTTTCTAGGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCAC : 286921 320 : tLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluArgLeu : 338 !||||||:!!|||!!!|||||||||:!!||||||||||||||||||||||||! !||| rLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeu 286922 : GTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTC : 286978 339 : MetGluLys >>>> Target Intron 1 >>>> SerSerSerIleGlyLeuSe : 348 |||::: 74 bp !!! !!.!:!!|||||||| SerGluGln++ ++CysLeuLysValGlyLeuSe 286979 : TCCGAACaggt.........................agtGCTTAAAAGTCGGCTTGTC : 287082 349 : rCysPheMetIleAspTrpPheGlnLeuProThrLysThrIleHisAspLeuIleLeu : 367 | !!:!||||||||||||!:!!::|||||| !|||||| !!!.! !||||||||| rThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeu 287083 : AACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTG : 287139 368 : IleIleAlaMetSerAsnAsnProIleLysIleSerAlaGlySerIleValAspLeuS : 387 |||.!!|||:!!||||||::! !!||||||:!!!!!||||||!.!|||:!!||||||| IlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuS 287140 : ATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCT : 287199 388 : erLeuTyrThrPheGlyGlyValLeuLysThrSerLeuValTyr : 401 ||||| !!:!||| !!.!!||| !! ! !!:!||| !||| erLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 287200 : CTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 287243 vulgar: AmOr61 280 401 . KQ414889.1 286806 287243 + 264 M 61 183 5 0 2 I 0 70 3 0 2 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286807 287243 264 + . gene_id 19 ; sequence AmOr61 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286807 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286807 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287243 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287243 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286807 287243 264 + . alignment_id 19 ; Query AmOr61 ; Align 286807 281 183 ; Align 287064 342 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 258 Query range: 280 -> 401 Target range: 280019 -> 280456 281 : GlnGluLeuCysPheLeuGluCysIleGlySerThrPheLeuIleCysLeuLeuGluT : 300 .!.!!:||||||!:!!!!.!. !:!! !:!!! !.!! !.!! !:!!! !..!! AspAspLeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerL 280020 : GACGACTTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGT : 280077 301 : yrTyrCysIleThrAspTrpGluLeuSerAsnThrIleSerLeuThrThrTyrThrMe : 319 ! !.!! !!!:||||||! !!:!:!!.!!|||.!! ! !|||||| !|| euSerValPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMe 280078 : TGTCAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAAT : 280134 320 : tLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluArgLeu : 338 |!!!|||||||||||||||||||||:!!||||||||||||||||||||||||! !||| tPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeu 280135 : GTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTC : 280191 339 : MetGluLys >>>> Target Intron 1 >>>> SerSerSerIleGlyLeuSe : 348 |||::: 74 bp !!!! !!.!:!!|||:!!|| SerGluGln++ ++CysLeuLysValGlyValSe 280192 : TCCGAACaggt.........................agTGCTTAAAAGTCGGCGTGTC : 280295 349 : rCysPheMetIleAspTrpPheGlnLeuProThrLysThrIleHisAspLeuIleLeu : 367 | !!:!||||||||||||!:!!::|||||| !|||! ! !!!.! !||||||||| rThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeu 280296 : AACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTG : 280352 368 : IleIleAlaMetSerAsnAsnProIleLysIleSerAlaGlySerIleValAspLeuS : 387 |||.!!|||:!!||||||::! !!||||||:!!!!!||||||!.!|||:!!||||||| IlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuS 280353 : ATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCT : 280412 388 : erLeuTyrThrPheGlyGlyValLeuLysThrSerLeuValTyr : 401 ||||| !!:!||| !!.!!||| !! ! !!:!||| !||| erLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 280413 : CTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 280456 vulgar: AmOr61 280 401 . KQ414889.1 280019 280456 + 258 M 61 183 5 0 2 I 0 70 3 0 2 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280020 280456 258 + . gene_id 20 ; sequence AmOr61 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280020 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280020 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280456 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280020 280456 258 + . alignment_id 20 ; Query AmOr61 ; Align 280020 281 183 ; Align 280277 342 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 223 Query range: 304 -> 400 Target range: 224323 -> 224676 305 : AspTrpGluLeuSerAsnThrIleSerLeuThrThrTyrThrMetLeuLeuIleSerL : 324 :::|||... |||:!! !! !||| !..!|||||| !!!:||||||!!:|||| GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 325 : euThrPheAsnIlePheIleLeuCysTyrIleGlyGluArgLeuMetGluLys >>> : 342 ||||||||||||||||||||...|||||||||||||||! !:!! |||::: euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln++ 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggt... : 224437 343 : > Target Intron 1 >>>> SerSerSerIleGlyLeuSerCysPheMetIleA : 353 65 bp ......|||||| ! !! !:!||||||| ++CysGluLysIleGlyGlnValSerTyrMetIleA 224438 : ......................agtgtgaaaaaattggacaAGTGTCGTACATGATCG : 224533 354 : spTrpPheGlnLeuProThrLysThrIleHisAspLeuIleLeuIleIleAlaMetSe : 372 |||||!:!!:!||| !! !!!.! !! !! !! !|||||||||||||||||||| spTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 224534 : ACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGATGTC : 224590 373 : rAsnAsnProIleLysIleSerAlaGlySerIleValAspLeuSerLeuTyrThrPhe : 391 ||||::! !!||||||:!:!!!||||||!:!!!:|||!!:|||!!!||| !|||||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThrPhe 224591 : CAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACTTTC : 224647 392 : GlyGlyValLeuLysThrSerLeuVal : 400 |||! !||| !! |||! ! !||| GlyAspValSerIleThrIleThrVal 224648 : GGTGACGTAAGTATCACAATCACCGTC : 224676 vulgar: AmOr61 304 400 . KQ414889.1 224323 224676 + 223 M 37 111 5 0 2 I 0 61 3 0 2 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224676 223 + . gene_id 21 ; sequence AmOr61 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224676 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224676 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224676 223 + . alignment_id 21 ; Query AmOr61 ; Align 224324 305 111 ; Align 224500 342 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 209 Query range: 299 -> 400 Target range: 258249 -> 258642 300 : TyrTyrCysIleThrAspTrpGluLeuSerAsnThrIleSerLeuThrThrTyrThrM : 319 :::||| ... :::|||... !...::: :::|||::::::||| !| PheTyrTyrPheGlnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheM 258250 : ttttattattttcaggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTA : 258307 320 : etLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluArgLe : 338 ||:!!||||||||||||:::||||||||||||::::::|||||||||||||||! !|| etIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLe 258308 : TGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATT : 258364 339 : uMetGluLys >>>> Target Intron 1 >>>> SerSerSerIleGlyLeuS : 348 |! |||:!! 90 bp !!!!.!!.!:!!||| ! uThrGluGln++ ++CysLysLysValGlyAspV 258365 : AACAGAACAGgt.........................agTGCAAGAAAGTTGGCGACG : 258484 349 : erCysPheMetIleAspTrpPheGlnLeuProThrLysThrIleHisAspLeuIleLe : 367 ! !!:!|||! !||||||!:! ! |||||| !|||! !|||! !||||||||||| alValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLe 258485 : TGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTT : 258541 368 : uIleIleAlaMetSerAsnAsnProIleLysIleSerAlaGlySerIleValAspLeu : 386 |:!!|||||| |||!:! !:!!:!!|||!!!||||||...... ::! uValIleAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePheHisMet 258542 : GGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatG : 258598 387 : SerLeuTyrThrPheGlyGlyValLeuLysThrSerLeuVal : 400 |||:!!|||||||||.!!! !||| ! ! ! !!|||:!! SerIleTyrThrPheSerAspValSerTyrLeuArgLeuIle 258599 : TCCATTTACACATTCAGCGATGTGAGTTATCTTCGTTTGATT : 258642 vulgar: AmOr61 299 400 . KQ414889.1 258249 258642 + 209 M 42 126 5 0 2 I 0 86 3 0 2 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258250 258642 209 + . gene_id 22 ; sequence AmOr61 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 258250 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258250 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258642 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258642 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258250 258642 209 + . alignment_id 22 ; Query AmOr61 ; Align 258250 300 126 ; Align 258466 342 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 304 -> 394 Target range: 277371 -> 277713 305 : AspTrpGluLeuSerAsnThrIleSerLeuThrThrTyrThrMetLeuLeuIleSerL : 324 !!:|||... !|||:!!..! !!!:!!||||||:!! !|||:!!|||||||||: GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 325 : euThrPheAsnIlePheIleLeuCysTyrIleGlyGluArgLeuMetGluLys >>> : 342 !: |||||||||||| !:!!|||||||||||||||! !|||! |||:!! etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 343 : > Target Intron 1 >>>> SerSerSerIleGlyLeuSerCysPheMetIleA : 353 72 bp !!!!.!!.!:!!||| ! ! !!:!|||! : ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 354 : spTrpPheGlnLeuProThrLysThrIleHisAspLeuIleLeuIleIleAlaMetSe : 372 !!|||!:! ! |||||| !||| !|||! !:!!|||:!!|||||||||:!!! || snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 373 : rAsnAsnProIleLysIleSerAlaGlySerIleValAspLeuSerLeuTyrThrPhe : 391 |!:! |||||||||:::||||||...::::::...:::|||:!!||||||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 392 : GlyGlyVal : 394 |||! !||| GlyAspVal 277703 : GGCGATGTA : 277713 vulgar: AmOr61 304 394 . KQ414889.1 277371 277713 + 205 M 37 111 5 0 2 I 0 68 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277713 205 + . gene_id 23 ; sequence AmOr61 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277713 205 + . alignment_id 23 ; Query AmOr61 ; Align 277372 305 111 ; Align 277555 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 304 -> 394 Target range: 206050 -> 206401 305 : AspTrpGluLeuSerAsnThrIleSerLeuThrThrTyrThrMetLeuLeuIleSerL : 324 !!:|||||| !!:!||||||! !:!!:!!! !..!|||! !! !|||! !||||||! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 325 : euThrPheAsnIlePheIleLeuCysTyrIleGlyGluArgLeuMetGluLys >>> : 342 !|||||| !:!!|||||||||||||||||||||:!!! !|||!!:!!::!! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 343 : > Target Intron 1 >>>> SerSerSerIleGlyLeuSerCysPheMetIleA : 353 81 bp !:! ! !:!:||||||!!!! !! !! !:!:: ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 354 : spTrpPheGlnLeuProThrLysThrIleHisAspLeuIleLeuIleIleAlaMetSe : 372 !!|||!:!!::||||||!.!!:! ! !.!..!:!!|||||||||||||||||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 373 : rAsnAsnProIleLysIleSerAlaGlySerIleValAspLeuSerLeuTyrThrPhe : 391 |||| !!|||||||||:!!!!!||||||!.!!!: !!!!::!!|||||| !!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 392 : GlyGlyVal : 394 !! !||| ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: AmOr61 304 394 . KQ414889.1 206050 206401 + 204 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 204 + . gene_id 24 ; sequence AmOr61 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 204 + . alignment_id 24 ; Query AmOr61 ; Align 206051 305 111 ; Align 206243 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 296 -> 394 Target range: 214605 -> 215022 297 : LeuLeuGluTyrTyrCysIleThrAspTrpGluLeuSerAsnThrIleSerLeuThrT : 316 :::::::::::: ::: :!:|||.!.! !!:!||| !! !!!! !..!| IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 317 : hrTyrThrMetLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGl : 335 |||||..!:!!|||! !|||||||||||||||||||||||||||...||||||||||| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 336 : yGluArgLeuMetGluLys >>>> Target Intron 1 >>>> SerSerSerI : 345 ||||! !:!! |||:!! 123 bp !!!!.!!.!: yGluLeuValSerGluGln++ ++CysLysLysV 214721 : CGAGCTTGTGTCTGAACAGgt.........................agTGCAAAAAGG : 214873 346 : leGlyLeuSerCysPheMetIleAspTrpPheGlnLeuProThrLysThrIleHisAs : 364 !!||| ! !! !:!||||||!!:|||!:!!:!|||||| !!!.! !! ! ! alGlyGluValSerTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCy 214874 : TCGGAGAAGTATCGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTG : 214930 365 : pLeuIleLeuIleIleAlaMetSerAsnAsnProIleLysIleSerAlaGlySerIle : 383 !! !|||||||||!!:||||||||||||::: !!:!!|||.!!!!!||||||!:!!!: sCysIleLeuIleMetAlaMetSerAsnSerSerValLysPheThrAlaGlyAsnMet 214931 : TTGCATTTTGATCATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATG : 214987 384 : ValAspLeuSerLeuTyrThrPheGlyGlyVal : 394 |||!!:||||||:!! !||||||.!!.!!||| ValGluLeuSerIleSerThrPheSerSerVal 214988 : GTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215022 vulgar: AmOr61 296 394 . KQ414889.1 214605 215022 + 204 M 45 135 5 0 2 I 0 119 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 215022 204 + . gene_id 25 ; sequence AmOr61 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 215022 204 + . alignment_id 25 ; Query AmOr61 ; Align 214606 297 135 ; Align 214864 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 301 -> 399 Target range: 238402 -> 238802 302 : CysIleThrAspTrpGluLeuSerAsnThrIleSerLeuThrThrTyrThrMetLeuL : 321 |||... !!!:|||! ! !|||:!!.!!! !! !|||! !|||||| !:!: !| CysPhe***GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheValAlaL 238403 : tgtttctaGGAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTGTAGCAC : 238460 322 : euIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluArgLeuMetGl : 340 ||:!!:!!:!!..!! !|||! !||||||||||||||||||.!!|||||||||! || euValAlaIleValSerAsnThrPheIleLeuCysTyrIleSerGluArgLeuThrGl 238461 : TCGTTGCTATTGTTTCTAATACATTTATACTCTGTTATATCAGCGAAAGGCTGACAGA : 238517 341 : uLys >>>> Target Intron 1 >>>> SerSerSerIleGlyLeuSerCysP : 350 |:!! 106 bp !!!! !!.!:!!||| ! ! !! uGln++ ++CysLeuLysValGlyGluValValT 238518 : ACAGgt.........................agTGCTTGAAAGTTGGTGAAGTGGTTT : 238653 351 : heMetIleAspTrpPheGlnLeuProThrLysThrIleHisAspLeuIleLeuIleIl : 369 :!|||! !||||||!:! ! |||||| !!:!! !|||! !||||||||||||||||| yrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIl 238654 : ACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCAT : 238710 370 : eAlaMetSerAsnAsnProIleLysIleSerAlaGlySerIleValAspLeuSerLeu : 388 | ! |||||| !:!!|||:!!!!!||||||!.!:!!:!! !!:!!|||||| eLysArgSerAsnValValValLysValThrAlaGlyLysValLeuHisMetSerLeu 238711 : TAAACGATCGAACGTGGTCGTTAAAGTCACCGCTGGAAAAGTATTACATATGTCGCTT : 238767 389 : TyrThrPheGlyGlyValLeuLysThrSerLeu : 399 ||||||||||||! !||| !:!!|||!:!||| TyrThrPheGlyAspValSerGluThrAsnLeu 238768 : TACACGTTCGGCGATGTAAGTGAAACTAATCTT : 238802 vulgar: AmOr61 301 399 . KQ414889.1 238402 238802 + 204 M 40 120 5 0 2 I 0 102 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238403 238802 204 + . gene_id 26 ; sequence AmOr61 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 238403 238522 . + . KQ414889.1 exonerate:protein2genome:local exon 238403 238522 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238523 238524 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238523 238628 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 238627 238628 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238629 238802 . + . KQ414889.1 exonerate:protein2genome:local exon 238629 238802 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238403 238802 204 + . alignment_id 26 ; Query AmOr61 ; Align 238403 302 120 ; Align 238629 342 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 198 Query range: 301 -> 400 Target range: 254062 -> 254451 302 : CysIleThrAspTrpGluLeuSerAsnThrIleSerLeuThrThrTyrThrMetLeuL : 321 |||.!! !!!:||| ! !|||:!!.!! !! !||| !||||||! !:!: !| CysPhe***GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrL 254063 : tgctTCTAGGAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACAC : 254120 322 : euIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluArgLeuMetGl : 340 ||:!!:!!:!!..! ||| |||::::::|||||||||.!!!!:||||||! || euValAlaValValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGl 254121 : TCGTTGCTGTTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGA : 254177 341 : uLys >>>> Target Intron 1 >>>> SerSerSerIleGlyLeuSerCysP : 350 |:!! 92 bp !!!! !!.!:!!||| ! ! !! uGln++ ++CysLeuLysValGlyGluValValT 254178 : ACAGgt.........................agTGCTTGAAAGTTGGTGAAGTGGTTT : 254299 351 : heMetIleAspTrpPheGlnLeuProThrLysThrIleHisAspLeuIleLeuIleIl : 369 :!|||! !||||||!:! ! |||||| !!:!! !|||! !||||||||||||||||| yrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIl 254300 : ACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCAT : 254356 370 : eAlaMetSerAsnAsnProIleLysIleSerAlaGlySerIleValAspLeuSerLeu : 388 |.!! |||||| !:!!:!!|||!!!||||||...||| :::|||||| eThrArgSerAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeu 254357 : TACACGATCGAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTT : 254413 389 : TyrThrPheGlyGlyValLeuLysThrSerLeuVal : 400 ||||||||||||! !||| !:!!|||!:!|||||| TyrThrPheGlyAspValSerGluThrAsnLeuVal 254414 : TACACGTTCGGCGATGTAAGTGAAACTAATCTTGTT : 254451 vulgar: AmOr61 301 400 . KQ414889.1 254062 254451 + 198 M 40 120 5 0 2 I 0 88 3 0 2 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254063 254451 198 + . gene_id 27 ; sequence AmOr61 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254063 254182 . + . KQ414889.1 exonerate:protein2genome:local exon 254063 254182 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254183 254184 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254183 254274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254273 254274 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254275 254451 . + . KQ414889.1 exonerate:protein2genome:local exon 254275 254451 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254063 254451 198 + . alignment_id 27 ; Query AmOr61 ; Align 254063 302 120 ; Align 254275 342 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 190 Query range: 304 -> 394 Target range: 272836 -> 273176 305 : AspTrpGluLeuSerAsnThrIleSerLeuThrThrTyrThrMetLeuLeuIleSerL : 324 :!:||| ! !:!! ! ||||||||||||||| !|||:!!|||||||||: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 325 : euThrPheAsnIlePheIleLeuCysTyrIleGlyGlu >>>> Target Intron : 337 !:||||||||||||||||||::!||||||||||||||| 70 bp etThrPheAsnIlePheIleValCysTyrIleGlyGlu-+ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAat.................. : 272935 338 : 1 >>>> ArgLeuMetGluLysSerSerSerIleGlyLeuSerCysPheMetIleA : 353 ::: ::: ......|||||| ! ! !!:!|||! : ++LysAsnSer***GlnCysLysLysIleGlyGluValValTyrMetThrA 272936 : .......agaaaaattcttaacagtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 354 : spTrpPheGlnLeuProThrLysThrIleHisAspLeuIleLeuIleIleAlaMetSe : 372 !!|||!:! ! |||||| !||| !|||! !||||||||||||||||||:!!! !! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 373 : rAsnAsnProIleLysIleSerAlaGlySerIleValAspLeuSerLeuTyrThrPhe : 391 !!:! ! !|||||||||!!!||||||!!!|||||| !:!!|||:!!||||||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 392 : GlyGlyVal : 394 |||! !||| GlyAspVal 273166 : GGCGATGTA : 273176 vulgar: AmOr61 304 394 . KQ414889.1 272836 273176 + 190 M 32 96 5 0 2 I 0 66 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273176 190 + . gene_id 28 ; sequence AmOr61 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272932 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272932 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272933 272934 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 272933 273002 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273001 273002 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273003 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 273003 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273176 190 + . alignment_id 28 ; Query AmOr61 ; Align 272837 305 96 ; Align 273003 337 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 297 -> 400 Target range: 297439 -> 297821 298 : LeuGluTyrTyrCysIleThrAspTrpGluLeuSerAsnThrIleSerLeuThrThrT : 317 |||:::|||::: ... |||:!! ! !:!!! !|||! ! !..!||| LeuLysTyrHisPhePheGlnGlyTrpLysThrHisAspMetIlePheGlyValThrI 297440 : ttaaaatatcatttttttcaggGATGGAAAACTCACGATATGATTTTTGGGGTAACGA : 297497 318 : yrThrMetLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGl : 336 ! ! !!!:!!:!!|||:!!|||||||||||||||:!!||||||:!! !||||| leGlyGlyPheMetLeuSerIleThrPheAsnIlePheValLeuCysHisAlaGlyGl 297498 : TCGGCGGTTTCATGCTTTCGATCACTTTTAATATATTCGTATTATGTCATGCAGGTGA : 297554 337 : uArgLeuMetGluLysSerSerSerIleGlyLeu{S} >>>> Target Intron : 348 |! !|||:!:|||:!! ! !!!.!:!: !|||{|} 76 bp uLeuLeuValGluGluValProLysValPheLeu{S}++ 297555 : ACTTCTTGTCGAGGAGGTACCGAAAGTGTTTCTA{T}gt................... : 297593 349 : 1 >>>> {er}CysPheMetIleAspTrpPheGlnLeuProThrLysThrIleHisA : 364 {||} !:!! |||!!:|||!:!.!.|||||| !!!!.! ! !! !| ++{er}---TyrAsnIleGluTrpTyrAsnLeuProProAsnArgAlaLeuA 297594 : ......ag{CT}---TATAACATCGAATGGTACAACTTACCGCCAAACAGGGCTCTCG : 297711 365 : spLeuIleLeuIleIleAlaMetSerAsnAsnProIleLysIleSerAlaGlySerIl : 383 |||||:!:|||!!:|||!.!!!::!!!!. !||| !:!:!!!!!...|||...|| spLeuValLeuMetIleGlyIleAlaLysPheProProArgLeuThrGlyGlyLysIl 297712 : ATCTGGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCACAggtggaaaaat : 297768 384 : eValAspLeuSerLeuTyrThrPheGlyGlyValLeuLysThrSerLeuVal : 400 | |||:::|||:!! !!||||||.!!!.!|||! !!:: ||||||::: ePheAspIleSerIleAsnThrPheSerAlaValArgArgGlnSerLeuIle 297769 : attcgatatatCGATAAACACGTTCAGTGCCGTACGTAgacaaagtttaatt : 297821 vulgar: AmOr61 297 400 . KQ414889.1 297439 297821 + 151 M 50 150 S 0 1 5 0 2 I 0 72 3 0 2 S 1 2 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297440 297821 151 + . gene_id 29 ; sequence AmOr61 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 297440 297590 . + . KQ414889.1 exonerate:protein2genome:local exon 297440 297590 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 297591 297592 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 297591 297666 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 297665 297666 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 297667 297821 . + . KQ414889.1 exonerate:protein2genome:local exon 297667 297821 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 297440 297821 151 + . alignment_id 29 ; Query AmOr61 ; Align 297440 298 150 ; Align 297669 350 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 343 -> 400 Target range: 244664 -> 244835 344 : SerIleGlyLeuSerCysPheMetIleAspTrpPheGlnLeuProThrLysThrIleH : 363 !.!:!!||| ! ! !!:!|||! !||||||!:! ! |||||| !!:!! !|||! LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 244665 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 244722 364 : isAspLeuIleLeuIleIleAlaMetSerAsnAsnProIleLysIleSerAlaGlySe : 382 !|||||||||||||||||| ! ||||||! !:!!:!!|||!!!||||||!. euAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleThrAlaGlyLy 244723 : TCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCACCGCTGGAAA : 244779 383 : rIleValAspLeuSerLeuTyrThrPheGlyGlyValLeuLysThrSerLeuVal : 400 !:!!:!! !!:!!||||||||||||||||||! !||| !:!!|||!.!|||||| sValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrLysLeuVal 244780 : AGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAACTTGTT : 244835 vulgar: AmOr61 343 400 . KQ414889.1 244664 244835 + 142 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244665 244835 142 + . gene_id 30 ; sequence AmOr61 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244665 244835 . + . KQ414889.1 exonerate:protein2genome:local exon 244665 244835 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244665 244835 142 + . alignment_id 30 ; Query AmOr61 ; Align 244665 344 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 179 -> 247 Target range: 202688 -> 202892 180 : ValValTyrProThrTyrAsnAlaLeuPheAspValGlnLysSerProIleTyrGluL : 199 |||..!!:! !! !! ... !:!!.!!||||||::! ! ||||||:!: !!|||: ValThrPheSerPheSerGlyPheIleIleAspValArgTyrSerProValAsnGluI 202689 : GTGACGTTCTCCTTCTCAGGATTTATCATTGATGTTAGATACAGTCCTGTGAACGAGA : 202746 200 : euValTyrLeuLeuHisSerIleCysGlyTyrIleMetTyrSerValThrAlaGlySe : 218 !! !!!:!! !:!!!..! !:!!..!! ! !:!!!!::!!.!!||||||!.!|||:! lePhePheSerIleArgIleValAlaValIleLeuIleHisGlyValThrValGlyAl 202747 : TCTTCTTCTCGATTCGAATCGTAGCTGTCATCCTAATTCACGGTGTCACTGTAGGAGC : 202803 219 : rCysGlyLeuThrAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValIle : 237 !||| !!||||||||||||||||||..!|||! !|||||||||!!:|||:!!:!!!!: aCysCysLeuThrAlaLeuPheAlaValHisAspCysGlyGlnMetAspValLeuMet 202804 : TTGTTGCTTGACAGCGTTGTTTGCGGTTCACGATTGCGGCCAGATGGACGTTTTGATG : 202860 238 : AlaArgLeuAsnAspLeuIleHisGlyLys : 247 ||| !!|||.!. !!|||!!: !!|||::: AlaTrpLeuGluHisLeuMetAspGlyArg 202861 : GCCTGGCTGGAACATTTGATGGATGGTCGT : 202892 vulgar: AmOr61 179 247 . KQ414889.1 202688 202892 + 137 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202689 202892 137 + . gene_id 31 ; sequence AmOr61 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202689 202892 . + . KQ414889.1 exonerate:protein2genome:local exon 202689 202892 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202689 202892 137 + . alignment_id 31 ; Query AmOr61 ; Align 202689 180 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 339 -> 394 Target range: 234982 -> 235147 340 : GluLysSerSerSerIleGlyLeuSerCysPheMetIleAspTrpPheGlnLeuProT : 359 :!!:!!!!!!!!!.!:!!||| !!.! !:!|||! !!!:|||!:!!:!|||||| GlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProH 234983 : CAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTC : 235040 360 : hrLysThrIleHisAspLeuIleLeuIleIleAlaMetSerAsnAsnProIleLysIl : 378 !|||||| !! !! !|||:!!:!!||||||:!!! !|||!:!! !|||||||| isLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIl 235041 : ATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAAT : 235097 379 : eSerAlaGlySerIleValAspLeuSerLeuTyrThrPheGlyGlyVal : 394 |!!!||||||!.!.!!:!!.!.:!!|||:!! |||||||||! !||| eThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235098 : CACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: AmOr61 339 394 . KQ414889.1 234982 235147 + 114 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234983 235147 114 + . gene_id 32 ; sequence AmOr61 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234983 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234983 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234983 235147 114 + . alignment_id 32 ; Query AmOr61 ; Align 234983 340 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 129 -> 164 Target range: 300015 -> 300120 130 : ArgLysValMetLeuLysTyrGlyGlnIleGlyArgAsnLeuThrIleIleCysAlaV : 149 |||! !:!!||||||!:!|||! ! !!:.!!||||||||||||! !:!:||||||| ArgThrIleMetLeuArgTyrValThrMetSerArgAsnLeuThrThrValCysAlaV 300016 : CGTACGATCATGTTGAGATACGTGACTATGAGCAGAAATCTGACGACCGTGTGCGCCG : 300073 150 : alPheIleTyrThrGlyGlySerIlePheHisThrIleLeuGlnTyr : 164 |||||:!!|||.!!||||||! ! !:!||||||:!::!!|||!:! alPheLeuTyrAlaGlyGlyMetSerTyrHisThrValMetGlnPhe 300074 : TGTTTCTTTACGCAGGTGGTATGTCGTATCACACGGTGATGCAGTTC : 300120 vulgar: AmOr61 129 164 . KQ414889.1 300015 300120 + 114 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300016 300120 114 + . gene_id 33 ; sequence AmOr61 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 300016 300120 . + . KQ414889.1 exonerate:protein2genome:local exon 300016 300120 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300016 300120 114 + . alignment_id 33 ; Query AmOr61 ; Align 300016 130 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 304 -> 341 Target range: 219328 -> 219439 305 : AspTrpGluLeuSerAsnThrIleSerLeuThrThrTyrThrMetLeuLeuIleSerL : 324 !!:|||:!!! !!:!:!!..!! ||| !..!||||||! !!!:||||||||||||| GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 325 : euThrPheAsnIlePheIleLeuCysTyrIleGlyGluArgLeuMetGluLys : 341 ||||||||||||||||||||...|||||||||||||||! !:!! |||:!: euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: AmOr61 304 341 . KQ414889.1 219328 219439 + 113 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219439 113 + . gene_id 34 ; sequence AmOr61 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219439 113 + . alignment_id 34 ; Query AmOr61 ; Align 219329 305 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 204 -> 276 Target range: 202958 -> 203170 205 : SerIleCysGlyTyrIleMetTyrSerValThrAlaGlySerCysGlyLeuThrAlaL : 224 !:!:!:!! ..! !:!!!!::!!.!!||||||!.!|||:!!||| !!|||||||||| AsnValTrpAsnIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaL 202959 : AATGTGTGGAACATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGT : 203016 225 : euPheAlaThrHisAlaCysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLe : 243 ||||||||..!|||! !|||||||||!!:|||:!!:!!!!:||| !!|||.!. !!|| euPheAlaValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLe 203017 : TATTTGCGGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTT : 203073 244 : uIleHisGlyLys-----TyrThrLysAsnThrPheAsnLeuAsnThrArgLeuValL : 261 |!!: !!|||:::#####||| !:!!||| :!!||| !|||:!!|||! uMetAspGlyArg#####TyrGluGlnAsn---------ValAsnGlyArgMetValT 203074 : GATGGATGGTCGTTCGGATATGAGCAAAAT---------GTGAATGGCAGAATGGTGA : 203123 262 : ysIleValLysHisHisLeuArgIleLeuArgPheSerGluSerIle : 276 ||||||!..!!.|||:!!|||||||||!:!! ! !|||!!!||| hrIleValSerGlnHisIleArgIleLeuLysCysValGluCysIle 203124 : CCATCGTGAGCCAACACATACGGATACTGAAATGTGTGGAATGTATT : 203170 vulgar: AmOr61 204 276 . KQ414889.1 202958 203170 + 112 M 43 129 F 0 5 M 4 12 G 3 0 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202959 203170 112 + . gene_id 35 ; sequence AmOr61 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202959 203170 . + . KQ414889.1 exonerate:protein2genome:local exon 202959 203170 . + . insertions 0 ; deletions 3 ; frameshifts 5 KQ414889.1 exonerate:protein2genome:local similarity 202959 203170 112 + . alignment_id 35 ; Query AmOr61 ; Align 202959 205 129 ; Align 203093 248 12 ; Align 203105 255 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 300 -> 341 Target range: 210651 -> 210774 301 : TyrCysIleThrAspTrpGluLeuSerAsnThrIleSerLeuThrThrTyrThrMetL : 320 !:! !:!! !!!:|||!!:! !!.!:!! !!|||||| ! !||||||! !:!:| PheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValL 210652 : TTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTAC : 210709 321 : euLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluArgLeuMe : 339 |||||! !|||:!!||||||||||||||||||!!!||||||||||||||| !||| euLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAl 210710 : TCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGC : 210766 340 : tGluLys : 341 |||:!: aGluGln 210767 : TGAACAg : 210774 vulgar: AmOr61 300 341 . KQ414889.1 210651 210774 + 110 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210652 210774 110 + . gene_id 36 ; sequence AmOr61 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 210652 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210652 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210652 210774 110 + . alignment_id 36 ; Query AmOr61 ; Align 210652 301 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1413 Query range: 0 -> 409 Target range: 303127 -> 305937 1 : MetHisLeuPheValArgAspGlnThrAsn<->GlnProArgAsnLeuAsnTyrGluL : 19 |||||||||! !:!!|||!!:|||! !:!! :!!||||||||||||||||||:!!| MetHisLeuSerMetArgGluGlnIleAspArgLysProArgAsnLeuAsnTyrLysL 303128 : ATGCATCTCTCTATGCGAGAGCAGATCGATCGGAAACCGCGGAATTTGAATTACAAGA : 303185 20 : ysAspIleValTyrValThrLysHisAsnLysTrpIleLeuAsnSerIleGlyIleTr : 38 ||||||||||||||||||||||||||!:!||||||||||||!!.|||:!!|||||||| ysAspIleValTyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTr 303186 : AAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTG : 303242 39 : pProThrValLeuLysGlyIleAspGluTyrLeuProLysIleAlaIleAlaLeuSer : 57 ||||.!!|||||| ! ! !! !! ! !!:!||||||||||||.!!|||!.!|||||| pProAlaValLeuAspGluThrAlaGlyPheLeuProLysIleThrIleGlyLeuSer 303243 : GCCAGCCGTGTTGGACGAAACCGCAGGATTCCTACCAAAAATCACCATTGGACTCAGT : 303299 58 : AsnLeuValLeuSerPheThrValIleGlnCysValLeuHisIleLeuLeuGluGlnL : 77 ||||||||||||! !||||||||||||! !|||:!!|||||||||:!!!!!||||||| AsnLeuValLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnL 303300 : AATTTGGTTCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAA : 303359 78 : ysAspProIleLeuArgLeuLysIleLeuGlyLeuThrPhePheSerPheIleSerLe : 96 ||||| !!|||:!!|||||||||:!!!!!|||||| ! !|||!!!!!.|||||||| ysAspThrIleIleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLe 303360 : AGGATACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTT : 303416 97 : uMetLysTyrTrpValLeuThrMetArgLysProLysIleLysLeuCysIleGluGln : 115 |||||||||||||!.!|||.!!! !|||||||||!:!|||||| !|||||||||:!! uMetLysTyrTrpAlaLeuAlaThrArgLysProArgIleLysGluCysIleGluGlu 303417 : GATGAAGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAG : 303473 116 : IleGlnHisAspTrpLysGln >>>> Target Intron 1 >>>> ValGluPh : 125 :!:||| !|||||||||:!! 938 bp ||||||! ValGlnSerAspTrpLysGlu++ ++ValGluSe 303474 : GTGCAAAGTGATTGGAAAGAGgt.........................agGTGGAATC : 304441 126 : eGluArgAspArgLysLeuMetLeuLysTyrGlyIleIleGlyArgAsnLeuSerMet : 144 ! |||||||||:!!:!!||||||||||||||| !!!:||||||||||||!!!!!: rLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIle 304442 : TCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATA : 304498 145 : TyrSerIleValPheMetTyrSerGlyGlyIleIleTyrHisThrValMetHisTyrL : 164 !!!! !:!!|||||||||!!!||||||! !||||||||||||||||||!!.!:! IleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheA 304499 : ATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCG : 304558 165 : ysLeuGlySerTyrValAspGluTyrAsnArgThrIleLysLeuLeuIleTyrProTh : 183 ! !|||!!!||||||||||||||||||||||||||||||! !|||:!!|||||||| laThrGlyThrTyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProTh 304559 : CGACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCAC : 304615 184 : rTyrSerArgLeuTyrAspValGlnLysSerProValTyrGluLeuValTyrIleLeu : 202 ||||||| !|||!:!|||||||||! !||||||:!!|||||||||||||||.!!:!! rTyrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheVal 304616 : CTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTT : 304672 203 : GlnCysIleCysGlyTyrMetPheAspAlaValThrValGlyAlaCysGlyLeuAlaA : 222 !!.|||!!:|||||||||:!:.!! !!:!!:!!|||!.!||||||||||||||||||| HisCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaA 304673 : CATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCG : 304732 223 : laLeuPheAlaThrHisIleCysGlyGlnIleAspIleValMetAlaLysLeuGluAs : 241 ||||||||||||||||| !||||||||||||||||||||||||:!!::!|||! || laLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAs 304733 : CTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGA : 304789 242 : pLeuValAspGlyLysPheSerLysGluAsnSerAsnProAsnIleArgLeuIleGlu : 260 |||||||:!! |||||||||:::|||:!! !:!!! !|||||||||||| pLeuValAsn---------SerLysGluSerSerAspLeuAspLysArgLeuIleGlu 304790 : TCTTGTCAAC---------AGCAAAGAATCATCTGATTTAGATAAACGATTAATAGAA : 304837 261 : IleIleGluHisHisIleLysIleLeu{Ar} >>>> Target Intron 2 >>>> : 270 |||:!!|||||||||:!:::!||||||{||} 70 bp IleValGluHisHisLeuArgIleLeu{Ar}++ 304838 : ATTGTTGAGCATCATTTGCGAATTTTA{AG}gt......................... : 304871 271 : {g}PheSerAlaMetValGluThrValLeuGlnGluValCysPheLeuGluPheIl : 288 {|}|||||||||!!:|||:!!||||||||||||||||||||||||||||||||||| ++{g}PheSerAlaIleValGlnThrValLeuGlnGluValCysPheLeuGluPheIl 304872 : ag{A}TTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTTCTTGGAATTCAT : 304991 289 : eGlySerThrPheValIleCysLeuLeuGluTyrTyrCysIleThr >>>> Targe : 304 ||||||||||!!.:!!|||||||||||||||||||||||||||||| eGlySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysIleThr++ 304992 : TGGTTCTACCTTACTGATATGTCTACTTGAATACTACTGTATAACGgt.......... : 305041 305 : t Intron 3 >>>> AspTrpGlnGlnAsnAsnThrIleGlyLeuThrThrTyrSe : 317 62 bp ||||||:!!...!:!||||||:!!.!!||||||||||||!! ++AspTrpGluSerSerAsnThrValSerLeuThrThrTyrTh 305042 : ...............agGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATAC : 305140 318 : rLeuLeuLeuIleSerLeuValPheAsnIlePheLeuLeuCysTyrIleGlyAsnLeu : 336 !:!!||||||||||||:!!..!||||||||||||:!!|||||||||||||||.!.:!! rValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIle 305141 : AGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATT : 305197 337 : LeuIleGluLys >>>> Target Intron 4 >>>> SerSerAsnIleGlyIl : 346 |||!!:|||||| 413 bp ||||||!:!:!!|||:! LeuMetGluLys++ ++SerSerSerValGlyLe 305198 : CTTATGGAAAAGgt.........................agAGCAGTAGCGTTGGATT : 305640 347 : eValCysCysMetIleAspTrpTyrGlnLeuProIleLysThrIleGlnGlyLeuIle : 365 ! !|||! !||||||..!||||||!!.||||||! !|||||||||!!.||||||||| uSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIle 305641 : ATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATT : 305697 366 : LeuMetIleAlaMetSerAsnSerProAlaLysIleSerAlaAlaGlyIleAlaAspL : 385 |||!!:||||||||||||!:!!:!||||||||||||||||||!.! !:!!!.!|||| LeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysValValAspL 305698 : TTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATT : 305757 386 : euSerLeuSerThrPheGlySer >>>> Target Intron 5 >>>> ValLeu : 394 ||||||||||||||||||||!:! 106 bp |||||| euSerLeuSerThrPheGlyAsn++ ++ValLeu 305758 : TATCTTTATCCACATTTGGAAACgt.........................agGTTCTG : 305890 395 : LysThrSerPheAlaTyrLeuAsnPheIleArgThrThrIleMet : 409 |||||||||!!.|||||||||!:!|||:!!|||||||||:!!!!: LysThrSerLeuAlaTyrLeuSerPheLeuArgThrThrValIle 305891 : AAAACGTCATTAGCGTATTTAAGTTTCCTTCGGACTACCGTTATA : 305937 vulgar: AmOr58 0 409 . KQ414889.1 303127 305937 + 1413 M 10 30 G 0 3 M 112 336 5 0 2 I 0 934 3 0 2 M 122 366 G 3 0 M 22 66 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 37 111 5 0 2 I 0 409 3 0 2 M 52 156 5 0 2 I 0 102 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303128 305937 1413 + . gene_id 1 ; sequence AmOr58 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303128 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303128 303496 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304868 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 2 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305780 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305780 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305781 305782 . + . intron_id 5 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305781 305886 . + . intron_id 5 KQ414889.1 exonerate:protein2genome:local splice3 305885 305886 . + . intron_id 4 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305887 305937 . + . KQ414889.1 exonerate:protein2genome:local exon 305887 305937 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303128 305937 1413 + . alignment_id 1 ; Query AmOr58 ; Align 303128 1 30 ; Align 303161 11 336 ; Align 304435 123 366 ; Align 304801 248 66 ; Align 304940 271 99 ; Align 305101 304 111 ; Align 305625 341 156 ; Align 305887 393 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 700 Query range: 15 -> 406 Target range: 278555 -> 280545 16 : AsnTyrGluLysAspIleValTyrValThrLysHisAsnLysTrpIleLeuAsnSerI : 35 !..!::.!.! !||| :!!||| !..!:!! |||:::|||.!!|||!!. !!| ThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProI 278556 : ACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGA : 278613 36 : leGlyIleTrpProThrValLeuLysGlyIleAsp<->GluTyrLeuProLysIleAl : 53 |||||:!!|||||| ! !||| ! !! ! ! ||| ! :!! !...:!:!. leGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValVa 278614 : TTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGT : 278670 54 : aIleAlaLeu<->SerAsnLeuValLeuSerPheThrValIleGlnCysValLeuHis : 71 !:!!|||||| ||| !!!!:!!:!!.!!||| !:!!:!!! !|||!.!||| ! lLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCys 278671 : CCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGC : 278727 72 : IleLeuLeuGluGlnLys<->AspProIleLeuArgLeuLysIleLeuGlyLeuThrP : 90 ! !:!!|||!!::!!! |||! ! ! !!:!:!!|||!!::!!|||! ! ! ThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuS 278728 : ACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAA : 278787 91 : hePheSerPheIleSerLeuMetLysTyrTrpValLeuThrMetArgLysProLysIl : 109 !|||!!! !!::!! !!!:||||||!:::!!|||! ! !||| !||||| erPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIl 278788 : GTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGAT : 278844 110 : eLysLeuCysIleGluGlnIleGlnHisAspTrpLys<-><-><->GlnValGluPhe : 125 | !|||:!:.!..!.|||!:: ||||||... ..! !... eGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGln 278845 : CGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaa : 278901 126 : GluArgAspArgLysLeuMetLeuLysTyrGlyIleIleGlyArgAsnLeuSerMetT : 145 |||...:::|||::::::||| ! ! !!.!! !|||||||||::!|||:!!!!:! GluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIleP 278902 : gaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCT : 278961 146 : yrSerIleValPheMetTyrSerGlyGlyIleIleTyrHisThrValMetHisTyrLy : 164 :!||| !! !||||||||||||||||||:!!.!!||| !.!!||||||! ! heSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPh 278962 : TCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTT : 279018 165 : sLeuGlySerTyrValAspGluTyrAsnArgThrIleLysLeuLeuIleTyrProThr : 183 !! ! !! ! ! ! !!|||..!|||:!:!:!! !! ! !:!|||! ! eAlaValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIle 279019 : CGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATC : 279075 184 : TyrSerArgLeuTyrAspValGlnLysSerProValTyrGluLeuValTyrIleLeuG : 203 ||| !! !!||| !||| !!::! |||||| !!:!|||:!!||| ! .!!:!!| TyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetG 279076 : TATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGC : 279135 204 : lnCysIleCysGlyTyrMetPheAspAlaValThrValGlyAlaCysGlyLeuAlaAl : 222 |||||:!:..!!.!!:!:!:!!. !!:!!||||||||||||||||||.!!||| !|| lnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAl 279136 : AATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGC : 279192 223 : aLeuPheAlaThrHisIleCysGlyGlnIleAspIleValMetAlaLysLeuGluAsp : 241 |:!!|||!.!! !|||:!!|||||||||.!! |||:!!:!!.!!||||||!!: ! aValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLys 279193 : TGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAG : 279249 242 : LeuValAspGly<->LysPheSerLysGluAsnSerAsnProAsnIleArgLeuIleG : 260 |||:!!|||||| ||| !!!|||... |||!..! !.!. !|||||| !! LeuIleAspGlyValLysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyA 279250 : CTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAG : 279309 261 : luIleIleGluHisHisIleLysIleLeu{Ar} >>>> Target Intron 1 >> : 270 !:|||||||||||||||:!:|||||||||{ !} 571 bp spIleIleGluHisHisLeuLysIleLeu{Gl}++ 279310 : ATATCATCGAGCATCATCTGAAGATACTG{GG}gt....................... : 279343 271 : >> {g}PheSerAlaMetValGluThrValLeuGlnGluValCysPheLeuGluPhe : 287 {!}|||! !:!!...:!!||| !:!!|||.!.|||:!!||||||:!!||| ! ++{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluVal 279344 : ..ag{T}TTTATATCGCAAATCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTG : 279961 288 : IleGlySerThrPheValIleCysLeuLeuGluTyrTyrCysIleThr >>>> Tar : 304 ||||||!!!|||!!. !||||||!!!||| !||||||! :!!||| IleGlyCysThrLeuAsnIleCysPheLeuThrTyrTyrLeuLeuThr++ 279962 : ATTGGTTGCACGTTGAACATATGCTTTTTGACATATTATTTACTCACGgt........ : 280014 305 : get Intron 2 >>>> AspTrpGlnGlnAsnAsnThrIleGlyLeuThrThrTyr : 316 80 bp !!:|||:!!||||||:!!.!!|||||| ! !|||||| ++GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyr 280015 : .................agGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTAT : 280128 317 : SerLeuLeuLeuIleSerLeuValPheAsnIlePheLeuLeuCysTyrIleGlyAsnL : 336 ! !:!!!!!||||||||||||..!||||||:!!|||:!!|||||||||||||||.!.: LeuMetPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluI 280129 : TTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAA : 280188 337 : euLeuIleGluLys >>>> Target Intron 3 >>>> SerSerAsnIleGly : 345 !!||| !|||::: 74 bp !!!! !!!.:!!||| leLeuSerGluGln++ ++CysLeuLysValGly 280189 : TTCTCTCCGAACaggt.........................agTGCTTAAAAGTCGGC : 280289 346 : IleValCysCysMetIleAspTrpTyrGlnLeuProIleLysThrIleGlnGlyLeuI : 365 :!: ! !! !|||||||||||||||!::|||||| |||! ! !|||||||||| ValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuI 280290 : GTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGA : 280349 366 : leLeuMetIleAlaMetSerAsnSerProAlaLysIleSerAlaAlaGlyIleAlaAs : 384 |||||!!:.!!|||:!!||||||||| !! !|||:!!!!!|||!.! !||| !|| leLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAs 280350 : TACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGA : 280406 385 : pLeuSerLeuSerThrPheGlySer >>>> Target Intron 4 >>>> ValL : 394 |||||||||||||!:!||| !!||| 71 bp |||| pLeuSerLeuSerSerPheCysSer++ ++ValL 280407 : TCTCTCTTTAAGCAGCTTCTGCAGCgt.........................agGTGT : 280507 395 : euLysThrSerPheAlaTyrLeuAsnPheIleArgThr : 406 ||||||||:!!||||||||||||!:!!!.:!!|||||| euLysThrAlaPheAlaTyrLeuSerLeuLeuArgThr 280508 : TAAAAACGGCATTCGCATATCTGAGCTTATTACGTACG : 280545 vulgar: AmOr58 15 406 . KQ414889.1 278555 280545 + 700 M 31 93 G 0 3 M 10 30 G 0 3 M 21 63 G 0 3 M 44 132 G 0 9 M 124 372 G 0 3 M 24 72 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278556 280545 700 + . gene_id 2 ; sequence AmOr58 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278556 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278556 279340 . + . insertions 21 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280545 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280545 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278556 280545 700 + . alignment_id 2 ; Query AmOr58 ; Align 278556 16 93 ; Align 278652 47 30 ; Align 278685 57 63 ; Align 278751 78 132 ; Align 278892 122 372 ; Align 279267 246 72 ; Align 279913 271 99 ; Align 280092 304 111 ; Align 280277 341 156 ; Align 280504 393 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 666 Query range: 15 -> 400 Target range: 284502 -> 287243 16 : AsnTyrGluLysAspIleValTyrValThrLysHisAsnLysTrpIleLeuAsnSerI : 35 !..!::!!:! !||| :!!||| !..!:!! |||:::|||.!!|||!!. !!| ThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProI 284503 : ACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGA : 284560 36 : leGlyIleTrpProThrValLeuLysGlyIleAsp<->GluTyrLeuProLysIleAl : 53 |||||:!!|||||| ! !||| ! !! ! ! ||| ! :!! !...:!:!. leGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValVa 284561 : TTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGT : 284617 54 : aIleAlaLeu<->SerAsnLeuValLeuSerPheThrValIleGlnCysValLeuHis : 71 !:!!|||||| ||| !!!!:!!:!!.!!||| !:!!:!!! !|||!.!||| ! lLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCys 284618 : CCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGC : 284674 72 : IleLeuLeuGluGlnLys<->AspProIleLeuArgLeuLysIleLeuGlyLeuThrP : 90 ! !:!!|||!!::!!! |||! ! ! !!:!:!!|||!!::!!|||! ! ! ThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuS 284675 : ACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGA : 284734 91 : hePheSerPheIleSerLeuMetLysTyrTrpValLeuThrMetArgLysProLysIl : 109 !|||!!!.!.!!::!! !!!:||||||!:::!!|||! ! !||| !||||| erPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIl 284735 : GTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGAT : 284791 110 : eLysLeuCysIleGluGlnIleGlnHisAsp{Tr} >>>> Target Intron 1 : 120 | ! !|||:!::!!.!.|||!:: |||{||} 1012 bp eGlyGlnCysValLysAspIleArgAlaAsp{Tr}++ 284792 : CGGCCAATGCGTGAAGGACATTCGTGCGGAC{TG}gt..................... : 284828 121 : >>>> {p}LysGlnValGluPheGluArgAspArgLysLeuMetLeuLysTyrGlyI : 137 {|} ..! !... |||...:::|||::::::||| ! ! !!.!! +-{p}LeuSerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaA 284829 : ....ac{G}CTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTA : 285887 138 : leIleGlyArgAsnLeuSerMetTyrSerIleValPheMetTyrSerGlyGlyIleIl : 156 !|||||||||::!|||:!!!!:!:!!!! !! !||||||||||||||||||.!!.! rgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePh 285888 : GAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTT : 285944 157 : eTyrHisThrValMetHisTyrLysLeuGlySerTyrValAspGluTyrAsnArgThr : 175 !||| !|||||||||! ! !! ! !! ! ! ! !!|||..!||| eTyrThrThrValMetProLeuCysThrValArgThrGluIleIleAspAsnGluThr 285945 : CTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACC : 286001 176 : IleLysLeuLeuIleTyrProThrTyrSerArgLeuTyrAspValGlnLysSerProV : 195 :!:!:!! !! ! !:!|||! !||| !! !!||| !||| !!::! |||||| ValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProS 286002 : GTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGT : 286061 196 : alTyrGluLeuValTyrIleLeuGlnCysIleCysGlyTyrMetPheAspAlaValTh : 214 !!:!|||:!!||| ! .!!:!!||||||:!:..!!.!!:!:!:.!. !!:!!||||| erPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValTh 286062 : CGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCAC : 286118 215 : rValGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisIleCysGlyGlnIleAsp : 233 |||||||||||||.!!|||||||||:!!|||!.!! !|||:!!|||||||||.!! rValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArg 286119 : TGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGG : 286175 234 : IleValMetAlaLysLeuGluAspLeuValAspGly<->LysPheSerLysGluAsnS : 252 |||:!!:!!.!!||||||!!: ! |||||||||||| ||| !!!|||! ! | IleLeuValThrLysLeuAspLysLeuValAspGlyValLysGlyArgLysGlyLeuS 286176 : ATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGA : 286235 253 : erAsnProAsnIleArgLeuIleGluIleIleGluHisHisIleLysIleLeu{Ar} : 270 ||!..! !.!. !|||||| !!!:|||||||||||||||:!:|||||||||{ !} erThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}+ 286236 : GCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}g : 286291 271 : >>>> Target Intron 2 >>>> {g}PheSerAlaMetValGluThrValLeu : 279 408 bp {!}|||! !:!!...:!!||| !:!!||| + ++{y}PheIleSerGlnIleGluGlyLeuLeu 286292 : t.........................ag{T}TTTATATCGCAAATCGAGGGGCTCCTA : 286724 280 : GlnGluValCysPheLeuGluPheIleGlySerThrPheValIleCysLeuLeuGluT : 299 .!.|||:!!||||||:!!||| ! ||||||!!!|||!!. !||||||!!!|||! !| AsnGluIleCysPheValGluValIleGlyCysThrLeuAsnIleCysPheLeuGlyT 286725 : AACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGGGAT : 286784 300 : yrTyrCysIleThr >>>> Target Intron 3 >>>> AspTrpGlnGlnAsn : 308 |||||! :!:||| 80 bp !!:|||:!!|||!:! yrTyrLeuLeuThr++ ++GluTrpGluGlnSer 286785 : ATTATTTACTGACGgt.........................agGAATGGGAGCAAAGT : 286891 309 : AsnThrIleGlyLeuThrThrTyrSerLeuLeuLeuIleSerLeuValPheAsnIleP : 328 .!.||||||||| !! !||||||!!! !||||||:!!|||!!!..!||||||:!!| GluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerPheThrPheAsnValP 286892 : GAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTT : 286951 329 : heLeuLeuCysTyrIleGlyAsnLeuLeuIleGluLys >>>> Target Intron : 341 ||:!!|||||||||||||||.!.:!!||| !|||::: 74 bp heIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286952 : TCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt.................. : 286992 342 : 4 >>>> SerSerAsnIleGlyIleValCysCysMetIleAspTrpTyrGlnLeuP : 357 !!! !!!.:!!|||:!: ! !! !|||||||||||||||!::|||| ++CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuP 286993 : .......agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGC : 287112 358 : roIleLysThrIleGlnGlyLeuIleLeuMetIleAlaMetSerAsnSerProAlaLy : 376 || !|||||| !|||||||||||||||!!:.!!|||:!!||||||||| !! !|| roGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLy 287113 : CAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAA : 287169 377 : sIleSerAlaAlaGlyIleAlaAspLeuSerLeuSerThrPheGlySerValLeuLys : 395 |:!!!!!|||!.! !||| !|||||||||||||||!:!||| !!|||||| !! sLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIle 287170 : ATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATC : 287226 396 : ThrSerPheAlaTyr : 400 ! !!:!!!.:!!||| IleAsnLeuSerTyr 287227 : ATAAATTTATCCTAT : 287243 vulgar: AmOr58 15 400 . KQ414889.1 284502 287243 + 666 M 31 93 G 0 3 M 10 30 G 0 3 M 21 63 G 0 3 M 42 126 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 125 375 G 0 3 M 24 72 S 0 2 5 0 2 I 0 404 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284503 287243 666 + . gene_id 3 ; sequence AmOr58 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284503 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284503 284825 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286698 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 4 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 3 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287243 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287243 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284503 287243 666 + . alignment_id 3 ; Query AmOr58 ; Align 284503 16 93 ; Align 284599 47 30 ; Align 284632 57 63 ; Align 284698 78 126 ; Align 285839 121 375 ; Align 286217 246 72 ; Align 286700 271 99 ; Align 286879 304 111 ; Align 287064 341 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 461 Query range: 22 -> 405 Target range: 259772 -> 262192 23 : TyrValThrLysHisAsnLysTrpIleLeuAsnSerIleGlyIleTrpPro<-><->T : 40 ||| ! !:!! !|||::!|||.!!|||!!. !!|||||| !|||||| : TyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerS 259773 : TATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCAT : 259830 41 : hrValLeuLysGlyIleAspGluTyrLeuProLysIleAlaIleAlaLeuSerAsnLe : 59 !! ! !! !!:!!!!::!! !:!! !! ||| !||| !:!!!!! !! erSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSe 259831 : CCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAG : 259887 60 : uValLeuSerPheThrValIleGlnCysValLeuHisIleLeuLeuGluGlnLysAsp : 78 !..!:!! ! !!|||:!!|||! !||||||||||||!!:|||||||||:!!:!!..! rThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSer 259888 : TACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGT : 259944 79 : ProIleLeuArgLeuLysIleLeuGlyLeuThrPhePheSerPheIleSerLeuMetL : 98 ! !:!!!:! !|||:!:||||||! ! ! ! !!!!|||:!!.!!! !!!:! LeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleA 259945 : TTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTA : 260004 99 : ysTyrTrpValLeuThrMetArgLysProLysIleLysLeuCysIleGluGlnIleGl : 117 !.||| ..!||| !:!!||| ! ! ||| !|||:!:|||!!.:!::! snTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGl 260005 : ATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGA : 260061 118 : nHisAspTrpLysGlnValGluPheGluArgAspArgLysLeuMetLeuLysTyrGly : 136 !:!!||||||!:! :!! ! |||!:!|||!:!!!.:!!||||||!:!|||!.! uAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAla 260062 : GAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCG : 260118 137 : IleIleGlyArgAsnLeuSerMetTyrSerIleValPheMetTyrSerGlyGlyIleI : 156 ! !.!!|||||| !!:!!:!! ! !!!! !.!|||:!! ! .!!|||! !:!: LysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuC 260119 : AAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGT : 260178 157 : leTyrHisThrValMetHisTyrLysLeuGly<->SerTyrValAspGluTyrAsnAr : 174 !!:! ! !|||! ! ! !.. !! ! ! ! ! |||! .!. ! !..|| ysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrAr 260179 : GCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAG : 260235 175 : gThrIleLysLeuLeuIleTyrProThrTyrSerArgLeuTyrAspValGlnLysSer : 193 |! !:!! ! |||||| ! ! !!..!|||!.!..!||| :!!|||.!. ! ||| gIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSer 260236 : GATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGT : 260292 194 : ProValTyrGluLeuValTyrIleLeuGlnCysIleCysGlyTyrMetPheAspAlaV : 213 |||:!! !!|||:!!||| !:!!:!!|||! !:!!! |||!:!!!: ! :!!:!! ProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerS 260293 : CCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGA : 260352 214 : alThrValGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisIleCysGlyGlnIl : 232 !||||||||| !! !.!!|||||||||:!!.!..!!.!!||| |||||||||:! erThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLe 260353 : GCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTT : 260409 233 : eAspIleValMetAlaLysLeuGluAspLeuValAspGlyLysPheSerLysGluAsn : 251 ::!!:!::!!|||! ! !:!! !!!:!!!||||||! !..! !:!!:!:!!!!. uAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLys 260410 : GAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAA : 260466 252 : SerAsnProAsnIleArgLeuIleGluIleIleGluHisHisIleLysIleLeuArgP : 271 !.! !||| !! ..!:!! !! !|||:!!|||||||||:!:!:! !|||! !! LysAlaProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeuThr* 260467 : AAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTCACGT : 260526 272 : heSerAlaMetValGluThrValLeuGlnGluValCysPheLeuGluPheIleGlySe : 290 ..! !.!.! ! ||| !!:!!!:! !! ! !|||:!! :!!||||| **AspLeuPheAspIleThrPheValArg***ArgIlePheIleIleThrValGlySe 260527 : AAGATTTGTTTGATATTACTTTTGTACGATAAAGGATTTTTATAATTACGGTAGGATC : 260583 291 : rThrPheValIleCysLeu{Le} >>>> Target Intron 1 >>>> {u}Glu : 298 ||||...::: |||{:!} 1109 bp {!} rThrIleIle***LysLeu{Il}++ -+{e}Tyr 260584 : Tactataatttgaaaatta{at}gt.........................tg{a}tat : 261716 299 : TyrTyrCysIleThrAspTrpGlnGlnAsnAsnThrIleGlyLeuThrThrTyrSerL : 318 :::::: ::: !!:||| :!!.!.:!!! ! !..!|||:!!||||||! !: PhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheM 261717 : ttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCA : 261776 319 : euLeuLeuIleSerLeuValPheAsnIlePheLeuLeuCysTyrIleGlyAsnLeuLe : 337 !!:!!||||||:!!:!! !||||||:!!|||:!!:!!||||||||||||.!.:!!|| etMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLe 261777 : TGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACT : 261833 338 : uIleGluLys >>>> Target Intron 2 >>>> SerSerAsnIleGlyIleV : 347 |! |||:!! 81 bp !!!|||!!.:!!||| !| uThrGluGln++ ++CysSerLysValGlyAspV 261834 : AACGGAACAGgt.........................agTGCTCGAAAGTTGGTGACG : 261944 348 : alCysCysMetIleAspTrpTyrGlnLeuProIleLysThrIleGlnGlyLeuIleLe : 366 || !! !|||! !:!!|||||| ! |||||| !|||!:!|||! ! !|||||||| alValTyrMetThrAsnTrpTyrTyrLeuProAspLysSerIleLeuAspLeuIleLe 261945 : TTGTTTACATGACAAACTGGTATTATTTACCTGATAAAAGTATCCTTGATTTGATTTT : 262001 367 : uMetIleAlaMetSerAsnSerProAlaLysIleSerAlaAlaGlyIleAlaAspLeu : 385 |!!:|||||| !!!!. !!|||!.!!!. ! ! !..! !!.!!.!! !! ! uIleIleAla---ArgLysProProGlyAsn***PheLysCysArgPheThrArgSer 262002 : GATCATTGCA---CGAAAACCGCCGGGAAATTAGTTCAAATGTCGGTTTACACGTTCG : 262055 386 : Ser{Le} >>>> Target Intron 3 >>>> {u}SerThrPheGlySerValL : 394 :!!{:!} 75 bp {!} !! !.!. !..!|||: Ala{Il}++ ++{e}ProLeuIlePheGlnValV 262056 : GCG{AT}gt.........................ag{T}CCGTTGATATTCCAGGTGG : 262157 395 : euLysThrSerPheAlaTyrLeuAsnPheIleArg : 405 !!||||||:!!|||||||||||||||.!.:!:||| alLysThrAlaPheAlaTyrLeuAsnLeuLeuArg 262158 : TTAAAACTGCTTTCGCGTATCTGAATCTGTTGCGT : 262192 vulgar: AmOr58 22 405 . KQ414889.1 259772 262192 + 461 M 17 51 G 0 6 M 127 381 G 0 3 M 130 390 S 0 2 5 0 2 I 0 1105 3 0 2 S 1 1 M 43 129 5 0 2 I 0 77 3 0 2 M 29 87 G 1 0 M 16 48 S 0 2 5 0 2 I 0 71 3 0 2 S 1 1 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259773 262192 461 + . gene_id 4 ; sequence AmOr58 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259773 260605 . + . KQ414889.1 exonerate:protein2genome:local exon 259773 260605 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260606 260607 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 260606 261714 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261713 261714 . + . intron_id 0 ; splice_site "tg" KQ414889.1 exonerate:protein2genome:local cds 261715 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261715 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262062 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262062 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 262063 262064 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 262063 262137 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 262136 262137 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 262138 262192 . + . KQ414889.1 exonerate:protein2genome:local exon 262138 262192 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259773 262192 461 + . alignment_id 4 ; Query AmOr58 ; Align 259773 23 51 ; Align 259830 40 381 ; Align 260214 167 390 ; Align 261716 298 129 ; Align 261926 341 87 ; Align 262013 371 48 ; Align 262139 388 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 425 Query range: 15 -> 405 Target range: 256631 -> 258729 16 : AsnTyrGluLysAspIleValTyrValThrLysHisAsnLysTrpIleLeuAsnSerI : 35 |||!:!:!!!.. !!! !! !||| ! !:!! |||::!|||.!!|||!!. !!| AsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 256632 : AATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTA : 256689 36 : leGlyIleTrpPro<-><->ThrValLeuLysGlyIleAspGluTyrLeuProLysIl : 52 ||||| !|||||| :!! ! !! ! !:!!!!:..! !!:!! !!! :! leGlyAlaTrpProProSerSerSerThrThrThrLeuGluArgAsnValSerIleVa 256690 : TAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGT : 256746 53 : eAlaIleAlaLeuSerAsnLeuValLeuSerPheThrValIleGlnCysValLeuHis : 71 ! !! ! !:!!!!! !! ! !:!!! !||||||:!!|||! |||:!!|||||| lLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIleProCysLeuLeuHis 256747 : TTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCAT : 256803 72 : IleLeuLeuGluGlnLysAspProIleLeuArgLeuLysIleLeuGlyLeuThrPheP : 91 :!!!!!|||!!:.!. ! ..! ! :::::::::||| ...|||! !! ! ! ValPheLeuAspAspAspSerPheTyrMetLysValLysAsnPheGlyProMetSerH 256804 : GTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCC : 256863 92 : heSerPheIleSerLeuMetLysTyrTrpValLeuThrMetArgLysProLysIleLy : 110 !!!!.!!||||||! ! !!.||| !:!!||| !:!:!:! ! ! ! |||:: isTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleAr 256864 : ATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACG : 256920 111 : sLeuCysIleGluGlnIleGlnHisAspTrpLysGlnValGluPheGluArgAspArg : 129 :! !|||:!!|||!!.|||:!! ||||||!:!..!|||..! |||!:!|||!:! gTyrCysValGluHisIleGluThrAspTrpArgMetValArgArgGluLysAspGln 256921 : CTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAA : 256977 130 : LysLeuMetLeuLysTyrGlyIleIleGlyArgAsnLeuSerMetTyrSerIleValP : 149 :!!:!!|||:!!||| !!!.!! !.!!|||||| !!:!!:!!! !:!!!! !!.!. GlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaI 256978 : CAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTA : 257037 150 : heMetTyrSerGlyGlyIleIleTyrHisThrValMetHisTyrLysLeuGly<->Se : 167 !!||| ! |||||| ... ::: ..! ! ! !!. !! ! ! leMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAsnThrGluIleIl 257038 : TCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAAT : 257094 168 : rTyrValAspGluTyrAsnArgThrIleLysLeuLeuIleTyrProThrTyrSerArg : 186 !:!!|||! .!. ! !..! !! !:!:::!:!!||| ! ! !!..!|||!.!!:! eHisValGlyAsnGluThrThrIleValArgValLeuProValThrValTyrLysLys 257095 : TCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAG : 257151 187 : LeuTyrAspValGlnLysSerProValTyrGluLeuValTyrIleLeuGlnCysIleC : 206 |||! :!!|||.!.:!!||||||..! !!|||:!!||| !.!!:!!||| ! ! LeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheMetGlnThrTrpS 257152 : CTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGT : 257211 207 : ysGlyTyrMetPheAspAlaValThrValGlyAlaCysGlyLeuAlaAlaLeuPheAl : 225 ..! !!!: !.!! !||||||.!! !! !.!!|||||||||:!!||||| erSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAlaAlaValPheAl 257212 : CGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGC : 257268 226 : aThrHisIleCysGlyGlnIleAspIleValMetAlaLysLeuGluAspLeuValAsp : 244 ||||||| ! !||||||:!: !:!::!!|||:!! !:!! !!!:!!!|||:!! aThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGluPheValAsn 257269 : CACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAAT : 257325 245 : GlyLysPheSerLysGluAsnSerAsnProAsnIleArgLeuIleGluIleIleGluH : 264 ! !..! !:!:::|||...::: ||| !! !:!:!! !! !|||:!:|||| GluSerArgAsnArgGluLysThrPheProPheLysGlnIleGlyValIleValGluH 257326 : GAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGC : 257385 265 : isHisIleLysIleLeu{Ar} >>>> Target Intron 1 >>>> {g}PheSe : 272 |||||:!!!:!:!:|||{||} 760 bp {|}! ! isHisLeuArgValLeu{Ar}++ +-{g}CysVa 257386 : ATCATTTAAGAGTGCTG{AG}gt.........................ac{G}TGCGT : 258169 273 : rAlaMetValGluThrValLeuGlnGluValCysPheLeuGluPheIleGlySerThr : 291 ! ! !.!. !:!!! !|||.!.! !! !! ! !:!! !..!! ! !! lMetTyrArgAsnLeuLeuGlnGlnAsnGly***AsnArgThrTyrAsnAsnPhePro 258170 : TATGTACCGAAACCTGTTGCAACAAAATGGTTAAAATCGTACCTACAATAATTTTCCT : 258226 292 : PheValIleCysLeuLeuGluTyrTyrCysIleThrAspTrpGlnGlnAsnAsnThrI : 311 .!. !! ::: :::||| ... :::|||... !...::: IleHisSerTyrSerValIlePheTyrTyrPheGlnGluTrpSerThrGlnAspIleG 258227 : ATACACAGctattctgttattttttattattttcaggaATGGTCTACGCaagatattc : 258286 312 : leGlyLeuThrThrTyrSerLeuLeuLeuIleSerLeuValPheAsnIlePheLeuLe : 330 ...|||::::::|||! !:!!:!!|||||||||||| ||||||||||||::::: lnAsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValIl 258287 : aaaatttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaat : 258343 331 : uCysTyrIleGlyAsnLeuLeuIleGluLysSerSer >>>> Target Intron : 343 :||||||||||||.!.:!!|||! !|||:!! ! ! 90 bp eCysTyrIleGlyGluIleLeuThrGluGlnValPro+- 258344 : atgttACATAGGTGAAATATTAACAGAACAGGTACCaga................... : 258384 344 : 2 >>>> AsnIleGlyIleValCysCysMetIleAspTrpTyrGlnLeuProIleLy : 359 !!.:!!||| !||| !! !|||! !||||||||| ! |||||| !|| ++LysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspLy 258385 : ......agAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAA : 258520 360 : sThrIleGlnGlyLeuIleLeuMetIleAlaMetSerAsnSerProAlaLysIleSer : 378 |! !|||! ! !|||||||||:!:|||||| |||!:! ! !!.!:!!|||!!! sArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleThr 258521 : AAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACC : 258577 379 : AlaAlaGlyIleAlaAspLeuSerLeuSerThrPheGlySer >>>> Target In : 393 |||... ... ::!|||:!!! !||||||.!!..! 69 b AlaGlyLysPhePheHisMetSerIleTyrThrPheSerAsp++ 258578 : GCGggaaaattctttcacatGTCCATTTACACATTCAGCGATgt.............. : 258624 394 : tron 3 >>>> ValLeuLysThrSerPheAlaTyrLeuAsnPheIleArg : 405 p |||:!!||||||||||||||||||||||||!!.:!:||| ++ValIleLysThrSerPheAlaTyrLeuAsnLeuLeuArg 258625 : ...........agGTAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGT : 258729 vulgar: AmOr58 15 405 . KQ414889.1 256631 258729 + 425 M 24 72 G 0 6 M 127 381 G 0 3 M 103 309 S 0 2 5 0 2 I 0 756 3 0 2 S 1 1 M 72 216 5 0 2 I 0 86 3 0 2 M 50 150 5 0 2 I 0 65 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256632 258729 425 + . gene_id 5 ; sequence AmOr58 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256632 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256632 257404 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 258164 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258163 258164 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 258165 258381 . + . KQ414889.1 exonerate:protein2genome:local exon 258165 258381 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258382 258383 . + . intron_id 2 ; splice_site "ga" KQ414889.1 exonerate:protein2genome:local intron 258382 258471 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258470 258471 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258472 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258472 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258729 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258729 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256632 258729 425 + . alignment_id 5 ; Query AmOr58 ; Align 256632 16 72 ; Align 256710 40 381 ; Align 257094 167 309 ; Align 258166 271 216 ; Align 258472 343 150 ; Align 258691 393 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 418 Query range: 15 -> 303 Target range: 226909 -> 228175 16 : AsnTyrGluLysAspIleValTyrValThrLysHisAsnLysTrpIleLeuAsnSerI : 35 :!!|||:!!:!! !!:!: ! !! !:!! |||:::|||:!:|||!!. !!: AspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProL 226910 : GACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCAC : 226967 36 : leGlyIleTrpProThrValLeuLysGly<-><->IleAspGluTyrLeuProLysIl : 52 !!||||||||||||:!! !! !|||.!! |||! ..!! !!!! !! !:! euGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLe 226968 : TCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTT : 227024 53 : eAlaIleAlaLeuSerAsnLeuValLeuSerPheThrValIleGlnCysValLeuHis : 71 : ! ! !|||!!! !! !:!!:!!|||||| !:!!:!!..! !!! !|||:!! uMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyr 227025 : GATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTAC : 227081 72 : IleLeuLeuGluGlnLysAspProIleLeuArgLeuLysIleLeuGlyLeuThrPheP : 91 :!::!!|||||| !|||! ! !! ! !! !||||||!!::!!|||! !! !! !| ValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerP 227082 : GTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCT : 227141 92 : heSerPheIleSerLeuMetLysTyrTrpValLeuThrMetArgLysProLysIleLy : 110 ||! ! !!:||||||:!:||||||! :!!||||||.!.!.!:!! ! ! ||| hePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLe 227142 : TCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCT : 227198 111 : sLeuCysIleGluGlnIleGlnHisAspTrpLysGlnValGluPheGluArgAspArg : 129 !|||:!!|||!:!|||:!! |||||||||.!.:!!..!!:! !..!|||||| uGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArg 227199 : CGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGA : 227255 130 : LysLeuMetLeuLysTyrGlyIleIleGlyArgAsnLeuSerMetTyrSerIleValP : 149 !!.:!!|||:!!! !|||!.! ! !||||||!!.|||! !! !!!!! !!| AsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPheP 227256 : AACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTT : 227315 150 : heMetTyrSerGlyGlyIleIleTyrHisThrValMetHisTyrLysLeuGlySerTy : 168 ||:!:!:!|||... :::...::::::! !|||:!:! ! !!!. !|||||| heValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerVa 227316 : TCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGT : 227372 169 : r<->ValAspGluTyrAsnArgThrIleLysLeuLeuIleTyrProThrTyrSerArg : 186 ! ..!!!:!!: |||!.!!:! !! ! !:!! !:!||| ! !.!! ! lAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIle 227373 : TGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATC : 227429 187 : LeuTyrAspValGlnLysSerProValTyrGluLeuValTyrIleLeuGlnCysIleC : 206 :!! !||||||!:: ! |||||| !! !!|||:!! !!!:! :!!|||! !:!! IleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValT 227430 : ATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAA : 227489 207 : ysGlyTyrMetPheAspAlaValThrValGlyAlaCysGlyLeuAlaAlaLeuPheAl : 225 ||| !:!!!!. !!!.!|||||| !!.!||||||.!!:!!|||||||||.!!|| hrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAl 227490 : CAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGC : 227546 226 : aThrHisIleCysGlyGlnIleAspIleValMetAlaLysLeuGluAspLeuValAsp : 244 |..!||| !|||||||||!!:!!::!::!!:!!:!! !|||! ! !!|||:!!||| aValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAsp 227547 : GGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGAC : 227603 245 : GlyLysPheSerLysGluAsnSerAsnProAsnIleArgLeuIleGluIleIleGluH : 264 |||!:! ..!! !...!!.!!! !:!! |||:!! !...|||:!! | GlyArgAlaAspMetSerLysThrLeuAspAsp---ArgIleAlaSerIleValThrH 227604 : GGCAGAGCGGATATGAGCAAAACACTGGATGAT---AGAATCGCTAGCATCGTCACTC : 227660 265 : isHisIleLysIleLeu{Ar} >>>> Target Intron 1 >>>> {g}PheSe : 272 |||||:!!::!||||||{!.} 396 bp {!}||| isHisValArgIleLeu{As}++ ++{n}PheLe 227661 : ACCACGTTCGAATATTG{AA}gt.........................ag{C}TTTCT : 228080 273 : rAlaMetValGluThrValLeuGlnGluValCysPheLeuGluPheIleGlySerThr : 291 !|||:!::!!|||! !..!:!!|||:!!:!!..!|||:!!||||||:!!|||!!!||| uAlaLeuIleGluLysThrMetGlnGlnIleAlaPheValGluPheLeuGlyCysThr 228081 : GGCCCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGTACA : 228137 292 : PheValIleCysLeuLeuGluTyrTyrCysIleThr : 303 .!.:!!:!:||||||:!!||||||||| !|||||| IleIleLeuCysLeuIleGluTyrTyrIleIleThr 228138 : ATAATTCTGTGCCTCATCGAGTATTACATCATAACG : 228175 vulgar: AmOr58 15 303 . KQ414889.1 226909 228175 + 418 M 29 87 G 0 6 M 124 372 G 0 3 M 87 261 G 1 0 M 13 39 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226910 228175 418 + . gene_id 6 ; sequence AmOr58 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226910 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226910 227679 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226910 228175 418 + . alignment_id 6 ; Query AmOr58 ; Align 226910 16 87 ; Align 227003 45 372 ; Align 227378 169 261 ; Align 227639 257 39 ; Align 228077 271 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 408 Query range: 13 -> 303 Target range: 232432 -> 234623 14 : AsnLeuAsnTyrGluLysAspIleValTyrValThrLysHisAsnLysTrpIleLeuA : 33 !..|||||| ! !::!||| !! !||| !! !:!! |||:::|||.!!|||! ThrLeuAsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuT 232433 : ACGTTGAACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGA : 232490 34 : snSerIleGlyIleTrpProThrValLeuLys<-><->GlyIleAspGluTyrLeuPr : 50 .. !!!!:||| !|||||| !||| !:!! !! !.!.:!! ||| ! hrProMetGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAl 232491 : CACCGATGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGC : 232547 51 : oLysIleAlaIleAlaLeuSerAsnLeuValLeuSerPheThrValIleGlnCysVal : 69 !|||:!: !! ! ! !!!!:!!! !:!!:!!! !! !:!!:!!:!!! !|||:!! aLysLeuLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValProCysIle 232548 : GAAACTGTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATT : 232604 70 : LeuHisIleLeuLeuGluGlnLysAspProIleLeuArgLeuLysIleLeuGlyLeuT : 89 ||| !||||||!!!|||.!.! !..!! ! !|||:!!||| !:!!|||! !! LeuPheIleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProM 232605 : CTGTTCATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTA : 232664 90 : hrPhePheSerPheIleSerLeuMetLysTyrTrpValLeuThrMetArgLysProLy : 108 ! ! !! !.!.!!:.!! !:!!!!.|||!! !||| ! !:! ! ! ! etSerHisPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAs 232665 : TGAGTCACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGA : 232721 109 : sIleLysLeuCysIleGluGlnIleGlnHisAspTrpLysGlnValGluPheGluArg : 127 ||| ! !|||:!:||||||:!::!!!!.||||||::!.!.|||:!! ! pIleLeuTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLysProVal 232722 : CATCCTCTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTC : 232778 128 : AspArgLysLeuMetLeuLysTyrGlyIleIleGlyArgAsnLeuSerMetTyrSerI : 147 !!||| ! |||||||||||| !!!.!! !:!!||||||::::!!:!! !:!! HisArgAspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaA 232779 : CATCGTGATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTG : 232838 148 : leValPheMetTyrSerGlyGlyIleIleTyrHisThrValMetHisTyrLysLeuGl : 166 !!! !|||:!!!!!|||! ! ! ! !!.!.! !|||! !::::!!.! laPheCysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSe 232839 : CGTTTTGCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAG : 232895 167 : ySer<->TyrValAspGluTyrAsnArgThrIleLysLeuLeuIleTyrProThrTyr : 184 !!!! ||||||! .!. ! !:! !:!!!!: ! ! !||| !! ! !! !||| rThrPheTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyr 232896 : CACGTTCTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTAC : 232952 185 : SerArgLeuTyrAspValGlnLysSerProValTyrGluLeuValTyrIleLeuGlnC : 204 !!!!:!||| |||..!::! ||||||..! !!|||:!!:!!!:!:!!||||||| ThrLysLeuMetAspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnC 232953 : ACGAAGCTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGT : 233012 205 : ysIleCysGlyTyrMetPheAspAlaValThrValGlyAlaCysGlyLeuAlaAlaLe : 223 ||:!!! !|||!:!!!: ! :!!:!!||||||||||||||||||||||||!.!|||:! ysLeuSerGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaVa 233013 : GTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGT : 233069 224 : uPheAlaThrHisIleCysGlyGlnIleAspIleValMetAlaLysLeuGluAspLeu : 242 !.!.|||! !||| |||||||||:!::!!:!:||||||:!!||||||!!:|||||| lLeuAlaMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeu 233070 : TCTAGCGATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTG : 233126 243 : ValAspGlyLysPheSerLysGluAsnSerAsnProAsnIleArgLeuIleGluIleI : 262 ||||||!.!||| .!!:!!|||.!.!!! ! !!.!.! !:!||| ! |||: ValAspAlaLys---GlyGlnGluGluArgValAlaGlnArgLysLeuGlyPheIleV 233127 : GTGGACGCGAAA---GGGCAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCG : 233183 263 : leGluHisHisIleLysIleLeu{Ar} >>>> Target Intron 1 >>>> {g : 270 !:|||||||||:!::::! !|||{!!} 1315 bp {! alGluHisHisLeuArgThrLeu{Se}++ ++{r 233184 : TGGAGCATCATTTGCGTACATTA{AG}gt.........................ag{T : 234524 271 : }PheSerAlaMetValGluThrValLeuGlnGluValCysPheLeuGluPheIleGly : 289 }|||! ! !! :!!|||!.!|||:!!.!. !:!!|||.!.:!!|||!!.:!!||| }PheIleArgAsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuValGly 234525 : }TTTATACGGAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGA : 234579 290 : SerThrPheValIleCysLeuLeuGluTyrTyrCysIleThr : 303 !!!|||!!. !!!:|||:!!||||||||||||! :!!||| CysThrLeuAsnMetCysMetLeuGluTyrTyrLeuLeuThr 234580 : TGCACGTTGAACATGTGCATGCTCGAGTATTATTTACTCACG : 234623 vulgar: AmOr58 13 303 . KQ414889.1 232432 234623 + 408 M 30 90 G 0 6 M 124 372 G 0 3 M 79 237 G 1 0 M 22 66 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232433 234623 408 + . gene_id 7 ; sequence AmOr58 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232433 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232433 233208 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232433 234623 408 + . alignment_id 7 ; Query AmOr58 ; Align 232433 14 90 ; Align 232529 44 372 ; Align 232904 168 237 ; Align 233141 248 66 ; Align 234525 271 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 400 Query range: 13 -> 270 Target range: 208185 -> 208962 14 : AsnLeuAsnTyrGluLysAspIleValTyrValThrLysHisAsnLysTrpIleLeuA : 33 ||| !||||||:!!!!.|||:!: !!:! !..!:::! ||| !|||! |||! AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 34 : snSerIleGlyIleTrpProThrValLeu<-><->LysGlyIleAspGluTyrLeuPr : 50 !.! !|||||| !||||||! ! !:!! ... !!:!!!!:.!. !! !! ysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHi 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCA : 208300 51 : oLysIleAlaIleAlaLeuSerAsnLeuValLeuSerPheThrValIleGlnCysVal : 69 !! :!! !! !!.!||||||:!!! !:!!|||.!!|||! !||||||! ! !! ! sIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGly 208301 : TATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGC : 208357 70 : LeuHisIleLeuLeuGluGlnLysAspProIleLeuArgLeuLysIleLeuGlyLeuT : 89 :!! ! :!!|||! ! :!!||| ! ! !!:!|||||||||! !.!! ! MetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaL 208358 : ATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTC : 208417 90 : hrPhePheSerPheIleSerLeuMetLysTyrTrpValLeuThrMetArgLysProLy : 108 ! !|||! !.!.!!::!!!!!! !|||||| !:!!:!!|||:!:|||:!! ! ! euSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAs 208418 : TGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGA : 208474 109 : sIleLysLeuCysIleGluGlnIleGlnHisAspTrpLysGlnValGluPheGluArg : 127 |||::! !|||:!!||| ! :!!:!! !||||||!:!.!.|||||| !|||..! pIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGlu 208475 : CATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAG : 208531 128 : AspArgLysLeuMetLeuLysTyrGlyIleIleGlyArgAsnLeuSerMetTyrSerI : 147 |||||||||:!!|||||| ! !!!.!! !.!!!.!|||!!.|||! !:!! !!! AspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysG 208532 : GACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCG : 208591 148 : leValPheMetTyrSerGlyGlyIleIleTyrHisThrValMetHisTyrLysLeuGl : 166 !!.!|||||||||.!!||| |||...|||::: !!.!:!!! !! ! !! lyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAs 208592 : GAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGA : 208648 167 : ySerTyrValAspGlu<->TyrAsnArgThrIleLysLeuLeuIleTyrProThrTyr : 184 !!.! !|||!!:||| !||| !||| !!:! !|||:!!||||||..! ! pLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValPro 208649 : CAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCT : 208705 185 : SerArgLeuTyrAspValGlnLysSerProValTyrGluLeuValTyrIleLeuGlnC : 204 !.! !:!! ||||||!:! ! ||||||||| !!|||:!! !!|||! :!!|||! LysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnL 208706 : AAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAAT : 208765 205 : ysIleCysGlyTyrMetPheAspAlaValThrValGlyAlaCysGlyLeuAlaAlaLe : 223 :!:! |||!:!:!: ! !! !:!!||||||||||||||||||||||||||||| euLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLe 208766 : TGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCT : 208822 224 : uPheAlaThrHisIleCysGlyGlnIleAspIleValMetAlaLysLeuGluAspLeu : 242 |.!!|||! !||| |||||||||:!:.!.|||:!!|||:!! !:!!||| ! ||| uLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeu 208823 : GCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTG : 208879 243 : ValAspGlyLysPheSerLysGluAsnSerAsnProAsnIleArgLeuIleGluIleI : 262 |||||||||::! ..! ! |||.!.!.!||| !:!! |||||| !.!.|||: ValAspGlyArg---GluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleV 208880 : GTCGATGGACGG---GAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCG : 208936 263 : leGluHisHisIleLysIleLeuArg : 270 !:|||!!.|||:!!::!:!::!!!:! alGluGlnHisValArgValIleLys 208937 : TGGAGCAGCATGTTCGAGTGATCAAG : 208962 vulgar: AmOr58 13 270 . KQ414889.1 208185 208962 + 400 M 29 87 G 0 6 M 129 387 G 0 3 M 75 225 G 1 0 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 208962 400 + . gene_id 8 ; sequence AmOr58 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208186 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208962 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208186 208962 400 + . alignment_id 8 ; Query AmOr58 ; Align 208186 14 87 ; Align 208279 43 387 ; Align 208669 172 225 ; Align 208894 248 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 396 Query range: 22 -> 303 Target range: 266637 -> 267558 23 : TyrValThrLysHisAsnLysTrpIleLeuAsnSerIleGlyIleTrpPro<-><->T : 40 ||| ! !:!! |||::!|||.!!|||!!. !!|||||| !|||||| : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuS 266638 : TACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGT : 266695 41 : hrValLeuLysGlyIleAspGluTyrLeuProLysIleAlaIleAlaLeuSerAsnLe : 59 !!:!! !... !:!!!!:..! !:!! !! ! ! !|||!.!:!!!!! !!! erLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCy 266696 : CACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTG : 266752 60 : uValLeuSerPheThrValIleGlnCysValLeuHisIleLeuLeuGluGlnLysAsp : 78 ! !:!! !||||||||||||! |||:!!!!!|||:!!:!!||||||.!.:!!..! sSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSer 266753 : CTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGT : 266809 79 : ProIleLeuArgLeuLysIleLeuGlyLeuThrPhePheSerPheIleSerLeuMetL : 98 ! ! !!:!:!!|||:!:!!!|||! ! ! ! !!!!|||:!!.!! !!!:! IleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleA 266810 : ATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTA : 266869 99 : ysTyrTrpValLeuThrMetArgLysProLysIleLysLeuCysIleGluGlnIleGl : 117 !.||| ..!||| !:!:|||!.. !:!!|||::: !|||:!!|||!!.!!:|| snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 266870 : ACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCA : 266926 118 : nHisAspTrpLysGlnValGluPheGluArgAspArgLysLeuMetLeuLysTyrGly : 136 | ||||||!:! ||| !..!|||!:!:!!:!!||||||||| !!!.! nThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAla 266927 : AACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCG : 266983 137 : IleIleGlyArgAsnLeuSerMetTyrSerIleValPheMetTyrSerGlyGlyIleI : 156 ! ||||||||| !!:!!:!!!!:!:!!!! !.!|||||| ! !!!|||! !:!! ArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuG 266984 : AGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCG : 267043 157 : leTyrHisThrValMetHisTyrLysLeuGlySerTyr<->ValAspGluTyrAsnAr : 174 !||| !..!:!!! ! !:!! :!! !!!! |||! !.!. ! !.!|| lyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrAr 267044 : GCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAG : 267100 175 : gThrIleLysLeuLeuIleTyrProThrTyrSerArgLeuTyrAspValGlnLysSer : 193 |! !:!! ! |||||| !! ! !!..!|||!.!!:!:!! !! |||.!.! ||| gIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSer 267101 : GATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGC : 267157 194 : ProValTyrGluLeuValTyrIleLeuGlnCysIleCysGlyTyrMetPheAspAlaV : 213 |||..! !!|||:!!||| !:!!! !|||! !:!!! |||!:!!!: ! :!!:!! ProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerS 267158 : CCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGA : 267217 214 : alThrValGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisIleCysGlyGlnIl : 232 !..!|||||||||! !.!!|||||||||:!!||||||.!!||| |||||||||:! erValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLe 267218 : GCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCT : 267274 233 : eAspIleValMetAlaLysLeuGluAspLeuValAspGlyLysPheSerLysGluAsn : 251 :..!:!::!!||| ! !:!!:!!!!:!!!|||:!! !!... ..!!...!.!!. uSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLys 267275 : GAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAG : 267331 252 : SerAsnProAsnIleArgLeuIleGluIleIleGluHisHisIleLysIleLeu{Ar} : 270 !:! ! ! ! !!:!:!! !! !:!!:!!|||||||||:!:!:!:!!|||{!!} AsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se} 267332 : AACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG} : 267388 271 : >>>> Target Intron 1 >>>> {g}PheSerAlaMetValGluThrValLe : 279 69 bp {!}|||! !||| :!!|||!:!|||:! ++ ++{r}PheIleAlaArgIleGluSerValMe 267389 : gt.........................ag{C}TTCATAGCACGTATCGAAAGTGTAAT : 267484 280 : uGlnGluValCysPheLeuGluPheIleGlySerThrPheValIleCysLeuLeuGlu : 298 !...|||:!!||||||:!!|||!!..!! !!!!|||.!.! !||||||:!!|||... tSerGluIleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSer 267485 : GAGCGAAATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGC : 267541 299 : TyrTyrCysIleThr : 303 |||||| !:!!||| TyrTyrIleLeuThr 267542 : TATTATATCCTTACG : 267558 vulgar: AmOr58 22 303 . KQ414889.1 266637 267558 + 396 M 17 51 G 0 6 M 129 387 G 0 3 M 101 303 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266638 267558 396 + . gene_id 9 ; sequence AmOr58 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266638 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266638 267389 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267558 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267558 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266638 267558 396 + . alignment_id 9 ; Query AmOr58 ; Align 266638 23 51 ; Align 266695 40 387 ; Align 267085 169 303 ; Align 267460 271 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 392 Query range: 15 -> 271 Target range: 221357 -> 222131 16 : AsnTyrGluLysAspIleValTyrValThrLysHisAsnLysTrpIleLeuAsnSerI : 35 :!!|||:!!! !:!!:!: !! !..!:!! !:!:::|||||||||!!. !!| AspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProI 221358 : GATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGA : 221415 36 : leGlyIleTrpProThrVal<-><->LeuLysGlyIleAspGluTyrLeuProLysIl : 52 |||||:!!||||||!.! ! :!!... !:!!!!:..!|||||| ! !:! leGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLe 221416 : TCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 53 : eAlaIleAlaLeuSerAsnLeuValLeuSerPheThrValIleGlnCysValLeuHis : 71 : !! !!.!:!!!!! !! !:!!:!!!!!||| !:!!:!!! ||| !|||:!! uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 72 : IleLeuLeuGluGlnLysAspProIleLeuArgLeuLysIleLeuGlyLeuThrPheP : 91 :!::!!|||||| !:!!||| ! ! !|||:!!|||:!:||||||! ! ! !| ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 92 : heSerPheIleSerLeuMetLysTyrTrpValLeuThrMetArgLysProLysIleLy : 110 ||!!! ! !!::!!!!!:!:|||||| :!!|||! !:!: !:!! ! ! |||:: heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 111 : sLeuCysIleGluGlnIleGlnHisAspTrpLysGlnValGluPheGluArgAspArg : 129 : !|||||||||!::|||:!! |||||||||.!.:!! !:!...!:!|||!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 130 : LysLeuMetLeuLysTyrGlyIleIleGlyArgAsnLeuSerMetTyrSerIleValP : 149 ! :!!|||:!!:!! !!!.!|||.!!||||||...|||! !||| !!!!! ! !!| AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 150 : heMetTyrSerGlyGlyIleIleTyrHisThrValMetHisTyrLysLeuGlySerTy : 168 |||||||||||||| :::...|||::: !!.!!!:! !:!!..:!!|||!.! heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 169 : r<->ValAspGluTyrAsnArgThrIleLysLeuLeuIleTyrProThrTyrSerArg : 186 ! !.!.!.!!: ||| |||... ! !:!!:!:!:!||| !! !!! ! eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 187 : LeuTyrAspValGlnLysSerProValTyrGluLeuValTyrIleLeuGlnCysIleC : 206 :!! !|||..!!:! ! ||||||||| !!|||:!!:!!!:! |||||| !!!:. IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 207 : ysGlyTyrMetPheAspAlaValThrValGlyAlaCysGlyLeuAlaAlaLeuPheAl : 225 ..||| !:!!.!. !!::!:!!||| !!.!||||||.!!|||!.!|||:!!||||| laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 226 : aThrHisIleCysGlyGlnIleAspIleValMetAlaLysLeuGluAspLeuValAsp : 244 |..!||| !|||||||||!!:.!.:!::!!|||::! !|||:!! !!|||:!!:!! aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 245 : GlyLysPheSerLysGluAsnSerAsnProAsnIleArgLeuIleGluIleIleGluH : 264 |||::! ..!! ! ||| ||| !:!!! |||:!! :!!|||:!:.!.! GlyArgAlaAspMetCysAsn---AsnValAspArgArgIleAlaLysIleValAsnG 222052 : GGCCGGGCGGATATGTGTAAC---AACGTGGATAGGAGAATAGCGAAGATTGTGAATC : 222108 265 : isHisIleLysIleLeuArgPhe : 271 !.|||:!!::!||||||!:!!:! lnHisValArgIleLeuGlnTyr 222109 : AACACGTTCGAATATTGCAGTAT : 222131 vulgar: AmOr58 15 271 . KQ414889.1 221357 222131 + 392 M 26 78 G 0 6 M 127 381 G 0 3 M 83 249 G 1 0 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221358 222131 392 + . gene_id 10 ; sequence AmOr58 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221358 222131 . + . KQ414889.1 exonerate:protein2genome:local exon 221358 222131 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221358 222131 392 + . alignment_id 10 ; Query AmOr58 ; Align 221358 16 78 ; Align 221442 42 381 ; Align 221826 169 249 ; Align 222075 253 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 362 Query range: 5 -> 271 Target range: 212821 -> 213625 6 : ArgAspGlnThrAsnGlnProArgAsnLeuAsnTyrGluLysAspIleValTyrValT : 25 !:!|||:!!! ! ||| !..!:!!! !!.!||||||||| ::: LysAspGluLysLeuGlnValGluAspCysThrTyrGluLysArgValAsnLeuSerI 212822 : AAAGATGAGAAATTGCAGGTCGAAGACTGTACCTACGAGAAACGtgtaaatttaagta : 212879 26 : hrLysHisAsnLysTrpIleLeuAsnSerIleGlyIleTrpPro<-><->ThrValLe : 42 ! |||:::|||:!!|||!!. !!! |||:!:|||||| :!! !:! leProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspLysSerTyrVa 212880 : tacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCTACGT : 212936 43 : uLysGlyIleAspGluTyrLeuProLysIleAlaIleAlaLeuSerAsnLeuValLeu : 61 !..! !|||!!::!! !!:!! !!::!:!:!.!! !.!!:!!!!! !! !:!!:!! lSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLeuIle 212937 : TTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATC : 212993 62 : SerPheThrValIleGlnCysValLeuHisIleLeuLeuGluGlnLysAspProIleL : 81 .!!!:! !||||||! !||| !|||:!!:!:!!!|||!!: !:::::: ... GlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGluAsnIlePheL 212994 : GGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatatattta : 213053 82 : euArgLeuLysIleLeuGlyLeuThrPhePheSerPheIleSerLeuMetLysTyrTr : 100 ...:!!:!!:!:!!!|||:!! ! |||!!! ! !:!!||| !|||||| ysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHi 213054 : aagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCA : 213110 101 : pValLeuThrMetArgLysProLysIleLysLeuCysIleGluGlnIleGlnHisAsp : 119 !|||! !:!:!.! ! ! |||::: !|||:!!|||!!.!!::!!:!!||| sSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMetLysTyrAsp 213111 : TTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATATGAC : 213167 120 : TrpLysGlnValGluPheGluArgAspArgLysLeuMetLeuLysTyrGlyIleIleG : 139 ||||||.!.:!! ! !|||..!|||!:!:!!:!!||| ! ! !!!.!! !.!!| TrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSerPheG 213168 : TGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTG : 213227 140 : lyArgAsnLeuSerMetTyrSerIleValPheMetTyrSerGlyGlyIleIleTyrHi : 158 ||!:!!..:!! !! !!!! ! !!|||||||||!!!||| !! .!!||| lyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheThrPheTyrPh 213228 : GAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTT : 213284 159 : sThrValMetHisTyrLysLeuGlySerTyrVal<->AspGluTyrAsnArgThrIle : 176 ! !|||:!:! !!.. !! !!.! ||| !!:!!: !||| !|||.!! eLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAsnValThrPhe 213285 : CCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTC : 213341 177 : LysLeuLeuIleTyrProThrTyrSerArgLeuTyrAspValGlnLysSerProValT : 196 !:!! !:!!:!: !|||..!! !!! !:!! !||||||!:! ! ||||||||| ArgGlnMetValValProValSerArgPheIleValAspValArgTyrSerProValA 213342 : AGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGA : 213401 197 : yrGluLeuValTyrIleLeuGlnCysIleCysGlyTyrMetPheAspAlaValThrVa : 215 !!|||:!! !!!:!:!::!!||| !|||..!||| :!!.!! !!|||:!!.!!|| snGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaVa 213402 : ACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGT : 213458 216 : lGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisIleCysGlyGlnIleAspIle : 234 |! !||||||.!!|||||||||:!!||||||..!||| !|||||||||!!:! !||| lValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIle 213459 : GGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATT : 213515 235 : ValMetAlaLysLeuGluAspLeuValAspGlyLysPheSerLysGluAsnSerAsnP : 254 :!!|||::! !|||||| !!|||:!!||||||!:! ..! ! !!:!!.!||| LeuMetSerTrpLeuGluHisLeuIleAspGlyArg---GluAspMetSerLysAsnV 213516 : TTGATGAGCTGGCTGGAACATTTGATAGACGGTAGA---GAGGATATGAGCAAGAATG : 213572 255 : roAsnIleArgLeuIleGluIleIleGluHisHisIleLysIleLeuArgPhe : 271 !:!! !|||:!! ! |||:!:.!.!!.|||:!:::!||||||!:!!:: alAspAspArgIleAlaValIleValAsnGlnHisValArgIleLeuLysTrp 213573 : TGGACGACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTGAAGTGG : 213625 vulgar: AmOr58 5 271 . KQ414889.1 212821 213625 + 362 M 34 102 G 0 6 M 130 390 G 0 3 M 77 231 G 1 0 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212822 213625 362 + . gene_id 11 ; sequence AmOr58 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212822 213625 . + . KQ414889.1 exonerate:protein2genome:local exon 212822 213625 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212822 213625 362 + . alignment_id 11 ; Query AmOr58 ; Align 212822 6 102 ; Align 212930 40 390 ; Align 213323 170 231 ; Align 213554 248 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 349 Query range: 172 -> 393 Target range: 300189 -> 302036 173 : AsnArgThrIleLysLeuLeuIleTyrProThrTyrSerArgLeuTyrAspValGlnL : 192 ||| !||| !|||! !||| !|||||| !|||..! !!!!! !|||..!|||! AsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnT 300190 : AATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAA : 300247 193 : ysSerProValTyrGluLeuValTyrIleLeuGlnCysIleCysGlyTyrMetPheAs : 211 ||||||..!||||||:::|||:::.........|||.!!...!.! !!:.!. ! hrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTy 300248 : CCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTA : 300304 212 : pAlaValThrValGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisIleCysGly : 230 ! !||||||..!!.!|||! !.!!|||||||||:!!|||!.!||||||||||||||| rAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGly 300305 : CAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGA : 300361 231 : GlnIleAspIleValMetAlaLysLeuGluAspLeuValAspGlyLysPheSerLysG : 250 ||||||.!.||| !||||||!:!|||||||||||||||!!: !:! .!!:!!: GlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGlu---ArgThrGlyGluL 300362 : CAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAG---AGGACGGGAGAGA : 300418 251 : luAsnSerAsnProAsnIleArgLeuIleGluIleIleGluHisHisIleLysIleLe : 269 !!:!!..!..!|||:!! ! !|||:!!! |||:!!..! !!|||:!:|||:!!|| ysAspAspGlyProAsp---ProLeuValValIleValArgAspHisValLysValLe 300419 : AGGACGACGGTCCTGAT---CCTTTGGTCGTTATCGTTCGAGATCACGTGAAGGTTTT : 300472 270 : u{Ar} >>>> Target Intron 1 >>>> {g}PheSerAlaMetValGluThr : 277 |{||} 140 bp {|}|||:!! !! |||||| ! u{Ar}++ ++{g}PheAlaLysAsnValGluGlu 300473 : A{AG}gt.........................ag{A}TTTGCAAAGAACGTTGAGGAA : 300636 278 : ValLeuGlnGluValCysPheLeuGluPheIleGlySerThrPheValIleCysLeuL : 297 ..!|||!::!!: !!|||!!.:!!|||.!!.!!! !||||||.!.:!!:!:||||||| ThrLeuArgAspPheCysLeuValGluIlePheGluSerThrLeuIleLeuCysLeuL 300637 : ACTTTGCGTGACTTCTGCTTAGTGGAAATCTTCGAGTCCACGCTGATTTTGTGTTTGC : 300696 298 : euGluTyrTyrCysIle >>>> Target Intron 2 >>>> ThrAspTrpGln : 306 ||||||||||||||:!: 1050 bp ! ! !!. euGluTyrTyrCysLeu++ +-IleLeuLeuHis 300697 : TCGAATACTACTGTTTGgt.........................atATTCTGCTACAT : 301773 307 : GlnAsnAsnThrIleGlyLeuThrThrTyrSerLeuLeuLeuIleSerLeuValPheA : 326 !:!...:!!:!!.!! !! ! !||||||! !! !! ! ... ...:::|||| ArgArgAspSerPheArgThrGlyThrTyrLeuGln***LysPheProPheLeuPheA 301774 : CGGCGAGATTCTTTCCGAACAGGTACTTACTTACAGTAGAagtttccatttcttttca : 301833 327 : snIlePheLeuLeuCysTyrIleGlyAsnLeuLeuIleGluLysSerSerAsnIleGl : 345 ||:!!|||! !! !! !! ! !.!! !:!! ! !!!: !!!!!|||.!.||||| snValPheProArgTyrLeuSerSerPheIleGlyArgAsp***CysSerGlnIleGl 301834 : atGTATTTCCACGGTATTTAAGCAGCTTTATTGGTCGTGATTAGTGTAGCCAAATTGG : 301890 346 : yIleValCysCysMetIleAspTrpTyrGlnLeuProIleLysThrIleGlnGlyLeu : 364 | !!.!! ! ! !||||||||||||.!.|||||| |||! ! ! ! ! !||| ySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeu 301891 : TTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTT : 301947 365 : IleLeuMetIleAlaMetSerAsnSerProAlaLysIleSerAlaAlaGlyIleAlaA : 384 ||||||:!:! !!.!!!:|||.!.! !||| !!|||:!!!!!|||!.! !||| !| IleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleA 301948 : ATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCG : 302007 385 : spLeuSerLeuSerThrPheGlySerVal : 393 |||||||||||!:!||||||.!!|||||| spLeuSerLeuAsnThrPheSerSerVal 302008 : ACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: AmOr58 172 393 . KQ414889.1 300189 302036 + 349 M 72 216 G 1 0 M 10 30 G 1 0 M 13 39 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 32 96 5 0 2 I 0 1046 3 0 2 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300190 302036 349 + . gene_id 12 ; sequence AmOr58 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300190 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300190 300476 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 300616 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300615 300616 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300617 300713 . + . KQ414889.1 exonerate:protein2genome:local exon 300617 300713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300714 300715 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300714 301763 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301762 301763 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 301764 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301764 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300190 302036 349 + . alignment_id 12 ; Query AmOr58 ; Align 300190 173 216 ; Align 300406 246 30 ; Align 300436 257 39 ; Align 300618 271 96 ; Align 301764 303 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 343 Query range: 7 -> 270 Target range: 289690 -> 290482 8 : GlnThrAsnGlnProArgAsnLeuAsnTyrGluLysAspIleValTyrValThrLysH : 27 ...!:!:!!!::||| !||| !..!||||||! !|||||| !|||..! !:!! SerSerAspArgProSerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluL 289691 : AGCAGCGATCGTCCGTCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAAT : 289748 28 : isAsnLysTrpIleLeuAsnSerIleGlyIleTrpProThrValLeuLysGlyIle<- : 46 ! ! |||||||||!!. !!||||||!!:!::||| !|||!!!!.. !! euCysHisTrpIleLeuLysProIleGlyMetTyrProPheValPheSerArgAlaSe 289749 : TATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAG : 289805 47 : ><-><->AspGluTyrLeuProLysIleAlaIleAlaLeuSerAsnLeuValLeuSer : 62 !!:..! ! !! !:!: !||| !:!!!!! !! !:!!|||..! rArgArgGluArgThrAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGln 289806 : CAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAG : 289862 63 : PheThrValIleGlnCysValLeuHisIleLeuLeuGluGlnLysAspProIleLeuA : 82 |||! !:!!:!!! !! ! !! !|||:!!|||!!!....!.!!.||| !! ! ! PheIleIleValProPheSerHisHisValLeuPheSerAspAsnAspMetAsnThrP 289863 : TTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGT : 289922 83 : rgLeuLysIleLeuGlyLeuThrPhePheSerPheIleSerLeuMetLysTyrTrpVa : 101 !:!!|||! !||||||! ! ! |||!!!!!.! !!!!!!!.!.||||||!! heValLysAsnLeuGlyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTy 289923 : TCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTA : 289979 102 : lLeuThrMetArgLysProLysIleLysLeuCysIleGluGlnIleGlnHisAspTrp : 120 !!!!!:!|||!:! !! !||| ! !|||:!::!!!!.|||:!!...|||||| rPheSerMetLysGlySerAlaIleGlyArgCysValLysHisIleGluArgAspTrp 289980 : CTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGG : 290036 121 : LysGlnValGluPheGluArgAspArgLysLeuMetLeuLysTyrGlyIleIleGlyA : 140 |||..!:!!... !||| ! !!||| :!!||||||!:!|||! !! !!:.!!| LysMetLeuArgAspGluAspHisArgValIleMetLeuArgTyrValThrMetSerA 290037 : AAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCC : 290096 141 : rgAsnLeuSerMetTyrSerIleValPheMetTyrSerGlyGlyIleIleTyrHisTh : 159 ||||||||! !! !!! :!!|||:!!|||! !||||||:!: !|||:!!|| rgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnTh 290097 : GGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACAC : 290153 160 : rValMetHisTyrLysLeuGlySerTyrValAspGluTyrAsnArgThrIleLysLeu : 178 ||||!!:! ! ! ! !!.! !|||:!!! ||| !||||||!:!! ! rValIleProLeuPheSerLysLysSerValAsnGly---AsnValThrIleArgPro 290154 : TGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGGT---AACGTGACTATCAGACCT : 290207 179 : LeuIleTyrProThrTyrSerArgLeuTyrAspValGlnLysSerProValTyrGluL : 198 |||! !|||||| !|||..!..!!!!!:!||||||||||||||||||!.!||||||: LeuThrTyrProGlyTyrGluGluPhePheAspValGlnLysSerProAlaTyrGluI 290208 : CTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGA : 290267 199 : euValTyrIleLeuGlnCysIleCysGlyTyrMetPheAspAlaValThrValGlyAl : 217 !!|||!:! !:!!!!.|||:!!! !! ! !!: ! !:!!|||:!!!.!|| leValPheCysMetHisCysValTyrValMetIleThrAlaAsnIleThrMetAlaAl 290268 : TCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGC : 290324 218 : aCysGlyLeuAlaAlaLeuPheAlaThrHisIleCysGlyGlnIleAspIleValMet : 236 |! !.!!|||.!!.!!:!!||||||||||||! !|||||||||||| ! ||| !! ! aTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThr 290325 : GTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACG : 290381 237 : AlaLysLeuGluAspLeuValAspGlyLysPheSerLysGluAsnSerAsnProAsnI : 256 .!!::!||||||||||||..! ! !! !.!. ! !|||!!..!! !:!! ThrArgLeuGluAspLeuThrLysArgGlyMetLeuLeuGluLysGlyValSerAsp- 290382 : ACGCGGCTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGAT- : 290441 257 : leArgLeuIleGluIleIleGluHisHisIleLysIleLeuArg : 270 |||||| ! :!!:!:... !|||:!::!!||||||!:! --ArgLeuAlaValValValSerGlyHisValGluIleLeuLys 290442 : --CGTTTGGCGGTTGTTGTGAGCGGTCACGTGGAGATCTTGAAG : 290482 vulgar: AmOr58 7 270 . KQ414889.1 289690 290482 + 343 M 38 114 G 0 9 M 126 378 G 1 0 M 83 249 G 1 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289691 290482 343 + . gene_id 13 ; sequence AmOr58 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289691 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289691 290482 . + . insertions 9 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289691 290482 343 + . alignment_id 13 ; Query AmOr58 ; Align 289691 8 114 ; Align 289814 46 378 ; Align 290192 173 249 ; Align 290441 257 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 307 Query range: 15 -> 270 Target range: 274362 -> 275136 16 : AsnTyrGluLysAspIleValTyrValThrLysHisAsnLysTrpIleLeuAsnSerI : 35 |||!:!!!:!.. !! !! !||| ! !:!! |||::!|||.!!|||!!. !!| AsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 274363 : AATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTA : 274420 36 : leGlyIleTrpPro<-><->ThrValLeuLysGlyIleAspGluTyrLeuProLysIl : 52 ||||| |||||| :!! ! !! ! !.!!!!:..! !||| !! ! :: leGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLeuSerHisLe 274421 : TAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCt : 274477 53 : eAlaIleAlaLeuSerAsnLeuValLeuSerPheThrValIleGlnCysValLeuHis : 71 : ||| ||| !!! ! !!:!! !! !|||||||||! ! !!:!!!!!||| uLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIlePheHis 274478 : tttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCAC : 274534 72 : IleLeuLeuGluGlnLysAspProIleLeuArgLeuLysIleLeuGlyLeuThrPheP : 91 |||:!!|||! !.!.:!!..!! ! !|||!:!||||||:!:||||||! ! ! ! IleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyH 274535 : ATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTC : 274594 92 : heSerPheIleSerLeuMetLysTyrTrpValLeuThrMetArgLysProLysIleLy : 110 !!!!||||||.!! !!!:!!.||| ..!||| !:!:|||!.. !:!!|||:: isTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleAr 274595 : ACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACG : 274651 111 : sLeuCysIleGluGlnIleGlnHisAspTrpLysGlnValGluPheGluArgAspArg : 129 : !|||:!:|||!!.!!:||| ||||||!:! ||| !..!|||!:! gGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAspGln 274652 : CGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAA : 274708 130 : LysLeuMetLeuLysTyrGlyIleIleGlyArgAsnLeuSerMetTyrSerIleValP : 149 :!!:!!||||||||| !!!.!! ||||||||| !!:!!:!!!!:!:!!!! !.!| GlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaP 274709 : CAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGT : 274768 150 : heMetTyrSerGlyGlyIleIleTyrHisThrValMetHisTyrLysLeuGlySer<- : 168 ||||| ! !!!|||! !:!! !||| !..!:!!! !:!! :!! !!!! heMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGlnThrVa 274769 : TCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGT : 274825 169 : >TyrValAspGluTyrAsnArgThrIleLysLeuLeuIleTyrProThrTyrSerArg : 186 ! |||! .!. ! !.!||||||:!: ! :!!||| ! ! !.!!|||!.!!:! lGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLysLys 274826 : TCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAG : 274882 187 : LeuTyrAspValGlnLysSerProValTyrGluLeuValTyrIleLeuGlnCysIleC : 206 :!! !! |||.!.! !||||||..! !!|||:!!||| ! !! !|||! !:!:! IleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnPheValS 274883 : ATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGT : 274942 207 : ysGlyTyrMetPheAspAlaValThrValGlyAlaCysGlyLeuAlaAlaLeuPheAl : 225 |||!:!!!: ! :!!:!! !.!!|||||||||! !.!!|||||||||:!!||||| erGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAl 274943 : CGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGC : 274999 226 : aThrHisIleCysGlyGlnIleAspIleValMetAlaLysLeuGluAspLeuValAsp : 244 |.!!||| !! !||||||:!:..!:!::!!||| ! !:!! !!:!!!|||:!! aAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheValAsn 275000 : GGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAAT : 275056 245 : GlyLysPheSerLysGluAsnSerAsnProAsnIleArgLeuIleGluIleIleGluH : 264 !... ...:::......::: !..!:!! !! !:!!:!!|||| HisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValValValGluH 275057 : CATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAAC : 275116 265 : isHisIleLysIleLeuArg : 270 |||||:!:!:!:!!|||||| isHisLeuArgValLeuArg 275117 : ATCATCTGAGGGTACTCAGG : 275136 vulgar: AmOr58 15 270 . KQ414889.1 274362 275136 + 307 M 24 72 G 0 6 M 128 384 G 0 3 M 103 309 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274363 275136 307 + . gene_id 14 ; sequence AmOr58 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274363 275136 . + . KQ414889.1 exonerate:protein2genome:local exon 274363 275136 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274363 275136 307 + . alignment_id 14 ; Query AmOr58 ; Align 274363 16 72 ; Align 274441 40 384 ; Align 274828 168 309 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 306 Query range: 17 -> 270 Target range: 204221 -> 204980 18 : GluLysAspIleValTyrValThrLysHisAsnLysTrpIleLeuAsnSerIleGlyI : 37 |||:!!|||:!: !|||!.!|||::: ! ||| !||||||...! !:!!||| GluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyA 204222 : GAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTG : 204279 38 : leTrpProThrValLeuLysGly<-><->IleAspGluTyrLeuProLysIleAlaIl : 54 ||||||! ! !:!!!!...! .!! ..! :!!! !::!|||! ! laTrpProIleProValAsnSerSerProPheThrArgLeuValArgArgIleGluHi 204280 : CGTGGCCGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACA : 204336 55 : eAlaLeuSerAsnLeuValLeuSerPheThrValIleGlnCysValLeuHisIleLeu : 73 !!.!:!!!!! ...:::... ... !:!!:!!! !!:!!|||:!!:!:!!! sValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPhe 204337 : CGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTC : 204393 74 : LeuGluGlnLysAspProIleLeuArgLeuLysIleLeuGlyLeuThrPhePheSerP : 93 |||:!!:!!|||:!! !! !:!!||||||||||||||||||! !! ! ! !!!! LeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysS 204394 : CTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCA : 204453 94 : heIleSerLeuMetLysTyrTrpValLeuThrMetArgLysProLysIleLysLeuCy : 112 !|||..!!!!.!.||||||! |||:!! ! |||! !||||||:!! ! ! erIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSe 204454 : GCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAG : 204510 113 : sIleGluGlnIleGlnHisAspTrpLysGlnValGluPheGluArgAspArgLysLeu : 131 !:!:.!. |||::!!.!||||||! !:!!!.! ! !!:..!:!!||| !:!! rLeuAsnThrIleArgArgAspTrpIleGluAlaThr---AspGluAsnArgLeuIle 204511 : TTTGAACACCATCAGACGCGACTGGATAGAGGCTACG---GATGAAAATCGGTTGATT : 204564 132 : MetLeuLysTyrGlyIleIleGlyArgAsnLeuSerMetTyrSerIleValPheMetT : 151 .!.! !..! ! !.!! |||||||||!..:!!! !:!! !:!! !!.! !|||| PheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetT 204565 : TTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGT : 204624 152 : yrSerGlyGlyIleIleTyrHisThrValMetHisTyrLysLeuGlySerTyrValAs : 170 ||.!!||||||:!: !|||...|||:!!:!:! !! ! !|||!!! !||| yrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleValTh 204625 : ACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTAAC : 204681 171 : pGluTyrAsnArgThrIleLysLeuLeuIleTyrProThrTyrSerArgLeuTyrAsp : 189 !!||| !||||||!:!! !||| ! !|||..!||| ...:::::: rProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePheAsn 204682 : ACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaac : 204738 190 : ValGlnLysSerProValTyrGluLeuValTyrIleLeuGlnCysIleCysGlyTyrM : 209 ! !|||:::|||||| !||||||:!!|||!:!||||||||| !!!:..!|||!:!: GluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheV 204739 : GAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTG : 204798 210 : etPheAspAlaValThrValGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisIl : 228 !: ! !!||||||! ! !|||.!!||||||:!!..!|||||||||!.! !||| alThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAl 204799 : TTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGC : 204855 229 : eCysGlyGlnIleAspIleValMetAlaLysLeuGluAspLeuValAspGlyLysPhe : 247 |||.!!..!:!: |||:!!:!! !|||:!!.!.! ||||||||| ||| aCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAsp---LysAla 204856 : GTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGAT---AAGGCG : 204909 248 : SerLysGluAsnSerAsnProAsnIleArgLeuIleGluIleIleGluHisHisIleL : 267 ..!! ! .!.!!! ! !:!!! !:!:!! !!!:|||:!!|||:!!!!.! | AspMetThrGluThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrL 204910 : GACATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGA : 204969 268 : ysIleLeuArg : 270 ||||| !||| ysIleLysArg 204970 : AGATAAAGAGG : 204980 vulgar: AmOr58 17 270 . KQ414889.1 204221 204980 + 306 M 27 81 G 0 6 M 80 240 G 1 0 M 119 357 G 1 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204222 204980 306 + . gene_id 15 ; sequence AmOr58 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204222 204980 . + . KQ414889.1 exonerate:protein2genome:local exon 204222 204980 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 204222 204980 306 + . alignment_id 15 ; Query AmOr58 ; Align 204222 18 81 ; Align 204309 45 240 ; Align 204549 126 357 ; Align 204906 246 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 285 Query range: 22 -> 270 Target range: 262849 -> 263602 23 : TyrValThrLysHisAsnLysTrpIleLeuAsnSerIleGlyIleTrpPro<-><->T : 40 ||| ! !:!! |||::!|||:!:|||!!. !!|||||| !|||||| . TyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerA 262850 : TACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCG : 262907 41 : hrValLeuLysGlyIleAspGluTyrLeuProLysIleAlaIleAlaLeuSerAsnLe : 59 !! !:!!..! !!!!:!!:..! !:!! ! :!! !|||!.!:!!!!! !!! laSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCy 262908 : CCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTG : 262964 60 : uValLeuSerPheThrValIleGlnCysValLeuHisIleLeuLeuGluGlnLysAsp : 78 !:!!:!! !! !|||||||||! ! !:!!|||||||||:!!|||||| :!!:!! sLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsn 262965 : TCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAAT : 263021 79 : ProIleLeuArgLeuLysIleLeuGlyLeuThrPhePheSerPheIleSerLeuMetL : 98 ! !:!!!:!|||:!!:!!||||||! ! ! ! !!!|||:!!.!!:!!!!:! PheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleA 263022 : TTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCA : 263081 99 : ysTyrTrpValLeuThrMetArgLysProLysIleLysLeuCysIleGluGlnIleGl : 117 !.||| !||| !:!:!.!!.. ! ! |||:!! !|||:!::!!!!.:!:|| snTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGl 263082 : ATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCA : 263138 118 : nHisAspTrpLysGlnValGluPheGluArgAspArgLysLeuMetLeuLysTyrGly : 136 |.!.|||||| ||| !..!|||!:!::::!!||||||||| !!!.! nGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAla 263139 : GGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCG : 263195 137 : IleIleGlyArgAsnLeuSerMetTyrSerIleValPheMetTyrSerGlyGlyIleI : 156 ! ! !|||||| !!:!!:!! ! !!!! :!!|||||| ! !!!.!! !!!: LysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetC 263196 : AAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGT : 263255 157 : leTyrHisThrValMetHisTyrLysLeuGlySerTyrValAsp<->GluTyrAsnAr : 174 ! ! ! !|||! !:!! ! ! ! !! !||| .!. ! !.!|| ysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrAr 263256 : GCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAG : 263312 175 : gThrIleLysLeuLeuIleTyrProThrTyrSerArgLeuTyrAspValGlnLysSer : 193 |! !:!!::::!!||| ! !|||..!|||!.!..!:!! ! |||.!.! !!:! gIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThrAsn 263313 : AATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAAT : 263369 194 : ProValTyrGluLeuValTyrIleLeuGlnCysIleCysGlyTyrMetPheAspAlaV : 213 |||..! !!|||:!! !! ! ! !|||! !:!:! |||!:!!!: !! !|||. ProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaT 263370 : CCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGA : 263429 214 : alThrValGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisIleCysGlyGlnIl : 232 .!||||||||||||! !|||:!!.!!|||:!!|||||| !||| !|||||||||:! hrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLe 263430 : CAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTT : 263486 233 : eAspIleValMetAlaLysLeuGluAspLeuValAspGlyLysPheSerLysGluAsn : 251 ::!!:!::!!|||:!! !:!! !!!:!!!|||:!! !... ..!:!!.!.!!. uAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLys 263487 : GAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAG : 263543 252 : SerAsnProAsnIleArgLeuIleGluIleIleGluHisHisIleLysIleLeuArg : 270 !:! ! ! !! !..!:!! !! !|||:!!|||||||||:!:!:!:!!|||||| AsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeuArg 263544 : AATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTGAGG : 263602 vulgar: AmOr58 22 270 . KQ414889.1 262849 263602 + 285 M 17 51 G 0 6 M 131 393 G 0 3 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262850 263602 285 + . gene_id 16 ; sequence AmOr58 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262850 263602 . + . KQ414889.1 exonerate:protein2genome:local exon 262850 263602 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262850 263602 285 + . alignment_id 16 ; Query AmOr58 ; Align 262850 23 51 ; Align 262907 40 393 ; Align 263303 171 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 265 Query range: 13 -> 285 Target range: 236825 -> 237644 14 : AsnLeuAsnTyrGluLysAspIleValTyrValThrLysHisAsnLysTrpIleLeuA : 33 .!.:!!||| ..!! !! !||| ! !:!! |||::!||| :!!! GluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetL 236826 : GAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGA : 236883 34 : snSerIleGlyIleTrpProThrValLeuLysGlyIleAspGluTyrLeuProLysIl : 52 !.|||||||||! !|||||| ! !!! !..!..!:!!!!:..! !!:!! !!::!|| ysSerIleGlyThrTrpProGlnPheSerSerAsnLeuGluArgAsnIleSerArgIl 236884 : AAAGCATAGGCACATGGCCACAGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAAT : 236940 53 : eAlaIleAlaLeuSerAsnLeuValLeuSerPheThrValIleGlnCysValLeuHis : 71 | !! !!.!:!!!!! !! !!.!:!! !|||:!!:!!|||! ||| !|||||| eLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHis 236941 : ATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCAC : 236997 72 : IleLeuLeuGluGlnLysAspProIleLeuArgLeuLysIleLeuGlyLeuThrPheP : 91 :!!:!!||||||:!! ! ! ! ! !!:!:!!||||||||||||! ! ! ! LeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuSerH 236998 : CTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCC : 237057 92 : heSerPheIleSerLeuMetLysTyrTrpValLeuThrMetArgLysProLysIleLy : 110 !!!! ! .!!!!!:!!!!:!..||| :!!||| !:!!|||::: !! |||:: isTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleAr 237058 : ACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACG : 237114 111 : sLeuCysIleGluGlnIleGlnHisAspTrpLysGlnValGluPheGluArgAspArg : 129 :! !! !.!!.!.!!.!!::!! !||||||!:! !..! :::... ::: gHisPhePheAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLys 237115 : TCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaa : 237171 130 : LysLeuMetLeuLysTyrGlyIleIleGlyArgAsnLeuSerMetTyrSerIleValP : 149 ::::::||||||||||||!.!! !.!!.!!||| !! !:!!!!:! !!!!! :!!| GluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIleP 237172 : gaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCT : 237231 150 : heMetTyrSerGlyGlyIleIleTyrHisThrValMetHisTyrLysLeuGlySerTy : 168 ||!!::!! |||||||||:!! :!! !|||||| ... ! !! ! heIleHis---GlyGlyIleLeuGlyTyrCysValMetThrAlaSerThrThrMetVa 237232 : TCATACAC---GGTGGTATACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGT : 237285 169 : rValAspGluTyrAsnArgThr<-><->IleLysLeuLeuIleTyrProThrTyrSer : 185 !|||! ! |||!:!||| :!:::::!!||| !! |||! !|||!.! lValValValGlyAsnLysThrThrIleLeuArgValLeuProLeuProMetTyrLys 237286 : TGTCGTGGTTGGAAACAAGACTACGATCTTGCGCGTGCTGCCCTTACCAATGTACAAA : 237342 186 : ArgLeuTyrAspValGlnLysSerProValTyrGluLeuValTyrIleLeuGlnCysI : 205 !!||| ! |||.!.! !!:! !!:!! !!!!::!!||| !:!:! !|||! !: GlyLeuLeuProValAspThrAsnThrMetAsnAspIleValValLeuSerGlnPheL 237343 : GGGCTCCTTCCAGTCGATACGAATACTATGAACGACATCGTTGTTTTGTCACAATTTC : 237402 206 : leCysGlyTyrMetPheAspAlaValThrValGlyAlaCysGlyLeuAlaAlaLeuPh : 224 !!! !|||!:!!!: :!! ! !.!!:!!.!!!.! .!!|||.!!::! !.! euSerGlyPheIleAlaAsnAsnSerAlaIleSerValIleSerLeuThrSerAlaLe 237403 : TCTCCGGATTTATAGCGAACAACAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCT : 237459 225 : eAlaThrHisIleCysGlyGlnIleAspIleValMetAlaLysLeuGluAspLeuVal : 243 ..!!:!!||| ! !||||||:!:..!:!:|||||| !..!:!!||||||!!!||| uThrSerHisAlaSerGlyGlnLeuSerValValMetLeuSerIleGluAspPheVal 237460 : AACATCACACGCGTCTGGCCAGTTGAGCGTGGTTATGTTGTCGATCGAAGATTTTGTG : 237516 244 : AspGlyLysPheSerLysGluAsnSerAsnProAsnIleArgLeuIleGluIleIleG : 263 ..!! ! ! !!!:!! !!!...!:!!! ! ! !..!:!! !|||:!:| SerGluAlaArgArgArgGlyLysAspAspHisPheAspGluIleProThrIleValG 237517 : AGTGAAGCGAGACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGG : 237576 264 : luHisHisIleLysIleLeuArgPheSerAlaMetValGluThrValLeuGlnGluVa : 282 ||.!.|||:!:!:!:!:|||!:!! !..!:!!:!!!!: !:!!|||! ! !! luGluHisLeuArgValLeuLys***ValCysLeuLeuAspLeuIleLeuLeuMetGl 237577 : AGGAACATTTGAGAGTGTTGAAGTAAGTATGTTTGTTGGATTTGATTTTGCTGATGGG : 237633 283 : lCysPheLeu : 285 ! |||||| yValPheLeu 237634 : TGTGTTTCTC : 237644 vulgar: AmOr58 13 285 . KQ414889.1 236825 237644 + 265 M 138 414 G 1 0 M 23 69 G 0 6 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236826 237644 265 + . gene_id 17 ; sequence AmOr58 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236826 237644 . + . KQ414889.1 exonerate:protein2genome:local exon 236826 237644 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 236826 237644 265 + . alignment_id 17 ; Query AmOr58 ; Align 236826 14 414 ; Align 237240 153 69 ; Align 237315 176 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 260 Query range: 12 -> 242 Target range: 194141 -> 194831 13 : ArgAsnLeuAsnTyrGluLysAspIleValTyrValThrLysHisAsnLysTrpIleL : 32 ||||||:!!||||||:!! !|||! !! !|||!.!..!::! ||| !:!!| ArgAsnValAsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuL 194142 : CGCAACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTC : 194199 33 : euAsnSerIleGlyIleTrpProThrValLeuLysGlyIleAspGluTyrLeuProLy : 51 ||!.. !!|||||||||||||||! !! ! !... ! !|||..! !! !! ! euThrProIleGlyIleTrpProArgGluAspSerLeuArgAspArgValArgLeuPh 194200 : TAACACCGATCGGTATCTGGCCAAGGGAGGATTCTCTTCGCGACAGAGTCCGACTGTT : 194256 52 : sIleAlaIleAlaLeuSerAsnLeuValLeuSerPheThrValIleGlnCysValLeu : 70 ! !! !!.!:!! ! ! !:!!:!!!!!||| !:!!:!!! !|||:!! eAlaGlnThrGlyValValPheAlaLeuMetCysPheLeuLeuValProHisValIle 194257 : CGCTCAAACTGGCGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATC : 194313 71 : HisIleLeuLeuGluGlnLysAspProIleLeuArgLeuLysIleLeuGlyLeuThrP : 90 :!!! !! !!!!!!: :!!|||! !! ! !:!!|||:!!:!!!.! ! ! TyrThrTyrPheAspCysGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnV 194314 : TACACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAG : 194373 91 : hePheSerPheIleSerLeuMetLysTyrTrpValLeuThrMetArgLysProLysIl : 109 ! ||||||.!.:!::!!:!!!!:|||!:!|||..!:!!! !:!!!.!!:! !:!!|| alPheSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnArgLysGluIl 194374 : TGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGAT : 194430 110 : eLysLeuCysIleGluGlnIleGlnHisAspTrpLysGlnValGluPheGluArgAsp : 128 |!:!!!!|||:!: !:!!!!::!! .!.!::!:!.!.||||||! !|||..!||| eArgPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCysGluGluAsp 194431 : CAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGAT : 194487 129 : ArgLysLeuMetLeuLysTyrGlyIleIleGlyArgAsnLeuSerMetTyrSerIleV : 148 |||:!!:!!||| !!!.! !!.!! !||||||||| !!!!!!!! ! !:!:! ArgGlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuG 194488 : CGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGG : 194547 149 : alPheMetTyrSerGlyGlyIleIleTyrHisThrValMetHisTyrLysLeuGlySe : 167 !.!! |||.!!|||!.!:!: ||||||! !:!!:!:! ! ! !! !! !!! lyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluAr 194548 : GACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAG : 194604 168 : rTyrValAspGluTyrAsnArgThrIleLysLeuLeuIleTyrProThrTyrSerArg : 186 ! !||| ! ||| !!|||!!!||| ! !! !||| !||| !!:! !!! ! ! gIleValLysGluAspAsnSerThrGlnIleProLeuProTyrLeuSerAsnTyrVal 194605 : GATTGTCAAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTT : 194661 187 : LeuTyrAspValGlnLysSerProValTyrGluLeuValTyrIleLeuGlnCysIleC : 206 !!!!:!! :!!:!! ! ||||||:!!||||||:!!..!!:!:!!! !||| :!: PhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerGlnIleLeuI 194662 : TTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGA : 194721 207 : ysGlyTyrMetPheAspAlaValThrValGlyAlaCysGlyLeuAlaAlaLeuPheAl : 225 !.!! !!!:.!. :!!..!!.! !||| !! !.!!|||!.!||| !.!! leSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIl 194722 : TTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTAT : 194778 226 : aThrHisIleCysGlyGlnIleAspIleValMetAlaLysLeuGluAspLeu : 242 !! !||| !|||||| !.!!!!::!:..!! !!:!:!!||| !:!! eMetHisCysCysGlyLeuPheGluValThrSerArgArgMetGluThrIle 194779 : TATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGATGGAGACTATT : 194831 vulgar: AmOr58 12 242 . KQ414889.1 194141 194831 + 260 M 230 690 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194142 194831 260 + . gene_id 18 ; sequence AmOr58 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194142 194831 . + . KQ414889.1 exonerate:protein2genome:local exon 194142 194831 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194142 194831 260 + . alignment_id 18 ; Query AmOr58 ; Align 194142 13 690 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 203 Query range: 303 -> 393 Target range: 206050 -> 206401 304 : AspTrpGlnGlnAsnAsnThrIleGlyLeuThrThrTyrSerLeuLeuLeuIleSerL : 323 !!:|||:!!.!.|||||||||! !!.!:!!! !..!|||! ! !|||! !||||||! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 324 : euValPheAsnIlePheLeuLeuCysTyrIleGlyAsnLeuLeuIleGluLys >>> : 341 !..!||| !:!!|||:!!|||||||||||||||.!.|||||||||!!::!! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 342 : > Target Intron 1 >>>> SerSerAsnIleGlyIleValCysCysMetIleA : 352 81 bp !:! ! !:!:|||:!:..!! !|||! !:!:: ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 353 : spTrpTyrGlnLeuProIleLysThrIleGlnGlyLeuIleLeuMetIleAlaMetSe : 371 !!||||||!::||||||! !!:! ! !::..!:!!||||||!!:||||||||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 372 : rAsnSerProAlaLysIleSerAlaAlaGlyIleAlaAspLeuSerLeuSerThrPhe : 390 ||||! !||| !|||:!!!!!|||!.! !!!: !!!::!!||||||:!!!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 391 : GlySerVal : 393 !..!||| ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: AmOr58 303 393 . KQ414889.1 206050 206401 + 203 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 203 + . gene_id 19 ; sequence AmOr58 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 203 + . alignment_id 19 ; Query AmOr58 ; Align 206051 304 111 ; Align 206243 341 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 199 Query range: 295 -> 393 Target range: 214605 -> 215022 296 : LeuLeuGluTyrTyrCysIleThrAspTrpGlnGlnAsnAsnThrIleGlyLeuThrT : 315 :::::::::::: ::: :!:|||.!...!|||||| !! ! ! !..!| IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 316 : hrTyrSerLeuLeuLeuIleSerLeuValPheAsnIlePheLeuLeuCysTyrIleGl : 334 ||||| !:!!|||! !|||||||||...||||||||||||:::...||||||||||| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 335 : yAsnLeuLeuIleGluLys >>>> Target Intron 1 >>>> SerSerAsnI : 344 |.!.|||:!! !|||:!! 123 bp !!!!.!!!.: yGluLeuValSerGluGln++ ++CysLysLysV 214721 : CGAGCTTGTGTCTGAACAGgt.........................agTGCAAAAAGG : 214873 345 : leGlyIleValCysCysMetIleAspTrpTyrGlnLeuProIleLysThrIleGlnGl : 363 !!||| !|||! ! !||||||!!:||||||!:!|||||| !!!.! !! ! ! alGlyGluValSerTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCy 214874 : TCGGAGAAGTATCGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTG : 214930 364 : yLeuIleLeuMetIleAlaMetSerAsnSerProAlaLysIleSerAlaAlaGlyIle : 382 !! !||||||!!:!!:||||||||||||||| !!!.!|||.!!!!!|||!.!..!!!: sCysIleLeuIleMetAlaMetSerAsnSerSerValLysPheThrAlaGlyAsnMet 214931 : TTGCATTTTGATCATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATG : 214987 383 : AlaAspLeuSerLeuSerThrPheGlySerVal : 393 !.!!!:||||||:!!|||||||||.!!|||||| ValGluLeuSerIleSerThrPheSerSerVal 214988 : GTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215022 vulgar: AmOr58 295 393 . KQ414889.1 214605 215022 + 199 M 45 135 5 0 2 I 0 119 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 215022 199 + . gene_id 20 ; sequence AmOr58 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 215022 199 + . alignment_id 20 ; Query AmOr58 ; Align 214606 296 135 ; Align 214864 341 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 303 -> 393 Target range: 219328 -> 219671 304 : AspTrpGlnGlnAsnAsnThrIleGlyLeuThrThrTyrSerLeuLeuLeuIleSerL : 323 !!:|||:!!..!|||:!!..!! .!! !..!||||||! !:!!||||||||||||| GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 324 : euValPheAsnIlePheLeuLeuCysTyrIleGlyAsnLeuLeuIleGluLys >>> : 341 ||...||||||||||||:::...||||||||||||.!.:!!:!! !|||:!: euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln++ 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAggt... : 219442 342 : > Target Intron 1 >>>> SerSerAsnIleGlyIleValCysCysMetIleA : 352 73 bp !! ...|||||| ::: ! !||||||! ++CysArgLysIleGlyGluMetSerTyrMetIleG 219443 : ......................agTGtaggaaaattggagaaatgtCGTACATGATCG : 219546 353 : spTrpTyrGlnLeuProIleLysThrIleGlnGlyLeuIleLeuMetIleAlaMetSe : 371 !:||||||!:!||| !! !|||! !! ! !! !:!!|||! ||||||||||| luTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaMetSe 219547 : AATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTATGTC : 219603 372 : rAsnSerProAlaLysIleSerAlaAlaGlyIleAlaAspLeuSerLeuSerThrPhe : 390 ||||||| !! !|||:!:!!!|||!.!..!!!:!.!!!:||||||:!!||||||||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPhe 219604 : GAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCACTTTT : 219660 391 : GlySerVal : 393 !..!||| ThrAspVal 219661 : ACCGACGTG : 219671 vulgar: AmOr58 303 393 . KQ414889.1 219328 219671 + 183 M 37 111 5 0 2 I 0 69 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219671 183 + . gene_id 21 ; sequence AmOr58 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219671 183 + . alignment_id 21 ; Query AmOr58 ; Align 219329 304 111 ; Align 219513 341 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 303 -> 393 Target range: 224323 -> 224658 304 : AspTrpGlnGlnAsnAsnThrIleGlyLeuThrThrTyrSerLeuLeuLeuIleSerL : 323 :::|||......::::!! !! !.!! !..!||||||! !:!!||||||!!:|||| GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 324 : euValPheAsnIlePheLeuLeuCysTyrIleGlyAsnLeu >>>> Target Int : 337 ||...||||||||||||:::...||||||||||||.!.||| 65 bp euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeu++ 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGgt............... : 224425 338 : ron 1 >>>> LeuIleGluLysSerSerAsnIleGlyIleValCysCysMetIleA : 352 !!!.!! ::: ......|||||| !|||! ! !||||||| --PhePheProGlnCysGluLysIleGlyGlnValSerTyrMetIleA 224426 : ..........taTTTTTTCCtcagtgtgaaaaaattggacaAGTGTCGTACATGATCG : 224533 353 : spTrpTyrGlnLeuProIleLysThrIleGlnGlyLeuIleLeuMetIleAlaMetSe : 371 ||||||||!:!||| !! !!!.! !! !! ! !!! !||||||!!:||||||||||| spTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 224534 : ACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGATGTC : 224590 372 : rAsnSerProAlaLysIleSerAlaAlaGlyIleAlaAspLeuSerLeuSerThrPhe : 390 ||||||| !! !|||:!:!!!|||!.!..!!!:!.!!!:|||!!!|||!!!|||||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThrPhe 224591 : CAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACTTTC : 224647 391 : GlySerVal : 393 |||..!||| GlyAspVal 224648 : GGTGACGTA : 224658 vulgar: AmOr58 303 393 . KQ414889.1 224323 224658 + 172 M 33 99 5 0 2 I 0 61 3 0 2 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224658 172 + . gene_id 22 ; sequence AmOr58 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224324 224422 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224422 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224423 224424 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224423 224487 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224486 224487 . + . intron_id 0 ; splice_site "TA" KQ414889.1 exonerate:protein2genome:local cds 224488 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224488 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224658 172 + . alignment_id 22 ; Query AmOr58 ; Align 224324 304 99 ; Align 224488 337 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 186 -> 246 Target range: 202712 -> 202892 187 : LeuTyrAspValGlnLysSerProValTyrGluLeuValTyrIleLeuGlnCysIleC : 206 :!! !||||||::! ! ||||||||| !!|||:!! !!!:! :!!!:! !:!!. IleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleValA 202713 : ATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAG : 202770 207 : ysGlyTyrMetPheAspAlaValThrValGlyAlaCysGlyLeuAlaAlaLeuPheAl : 225 .!! ! !:!:.!! !!!.!|||||||||||||||||| !!|||.!!||||||||||| laValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAl 202771 : CTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGC : 202827 226 : aThrHisIleCysGlyGlnIleAspIleValMetAlaLysLeuGluAspLeuValAsp : 244 |..!||| !|||||||||!!:|||:!!:!!|||||| !|||||| !!|||:!!||| aValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMetAsp 202828 : GGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGAT : 202884 245 : GlyLys : 246 |||::: GlyArg 202885 : GGTCGT : 202892 vulgar: AmOr58 186 246 . KQ414889.1 202712 202892 + 152 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202713 202892 152 + . gene_id 23 ; sequence AmOr58 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202713 202892 . + . KQ414889.1 exonerate:protein2genome:local exon 202713 202892 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202713 202892 152 + . alignment_id 23 ; Query AmOr58 ; Align 202713 187 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 335 -> 396 Target range: 211758 -> 211941 336 : LeuLeuIleGluLysSerSerAsnIleGlyIleValCysCysMetIleAspTrpTyrG : 355 |||:!!.!! !:!!!!! !!!.:!!||| ! !! !! !|||||||||||||||! LeuIlePhe***GlnThrValLysValGlyGluLysSerTyrMetIleAspTrpTyrA 211759 : CTCATATTTTGACAGACAGTAAAAGTTGGAGAAAAGTCTTACATGATCGACTGGTATC : 211816 356 : lnLeuProIleLysThrIleGlnGlyLeuIleLeuMetIleAlaMetSerAsnSerPr : 374 :!:!!||| !|||! ! ! !! !:!! !|||||||||:!!||||||:!!||| ! rgMetProGlyLysLysGlyLeuValValProLeuMetIleSerMetSerHisSerTh 211817 : GAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGATGATCTCCATGTCACATTCGAC : 211873 375 : oAlaLysIleSerAlaAlaGlyIleAlaAspLeuSerLeuSerThrPheGlySerVal : 393 !.!!||||||!!!|||!.!..!:!! !! !||||||:!!|||!:!||||||..!||| rThrLysIleThrAlaGlyAsnLeuIleValLeuSerIleSerSerPheGlyAspVal 211874 : CACCAAAATCACCGCTGGCAATCTCATCGTTCTTTCAATCAGTAGTTTCGGTGACGTA : 211930 394 : LeuLysThr : 396 ||| SerValThr 211931 : AGtgttaca : 211941 vulgar: AmOr58 335 396 . KQ414889.1 211758 211941 + 106 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 211759 211941 106 + . gene_id 24 ; sequence AmOr58 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 211759 211941 . + . KQ414889.1 exonerate:protein2genome:local exon 211759 211941 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 211759 211941 106 + . alignment_id 24 ; Query AmOr58 ; Align 211759 336 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 303 -> 340 Target range: 264537 -> 264648 304 : AspTrpGlnGlnAsnAsnThrIleGlyLeuThrThrTyrSerLeuLeuLeuIleSerL : 323 !!:|||:!!...:!:::: ...||||||||||||! !:!!:!!|||||||||: GluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerM 264538 : GAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATACTGATATCAA : 264595 324 : euValPheAsnIlePheLeuLeuCysTyrIleGlyAsnLeuLeuIleGluLys : 340 !! ! !||||||||||||:!!||||||||||||.!.:!!|||! !|||::: etCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGln 264596 : TGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcag : 264648 vulgar: AmOr58 303 340 . KQ414889.1 264537 264648 + 105 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264538 264648 105 + . gene_id 25 ; sequence AmOr58 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264538 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264538 264648 105 + . alignment_id 25 ; Query AmOr58 ; Align 264538 304 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 939 Query range: 10 -> 403 Target range: 262825 -> 265004 11 : LysLysPheGlySerLeuAsnGluTyrSerIleGlnLeuAsnArgTrpPheSerLysT : 30 :!!!..||||||||||||!:!!!:||||||:!:|||:!!|||||||||.!. !||| GluSerPheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysP 262826 : GAAAGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAAC : 262883 31 : hrIleGlyValTrpProLeuProSerSerThrSerLysLeuGluLysIleMetThrLy : 49 !!||||||!.!||||||||| !!:!!|||! !|||!:!:!!|||::!|||!!: ! roIleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPh 262884 : CGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTT : 262940 50 : sIleLeuIlePheLeuCysTrpIleIleAlaLeuPheValIleIleSerSerLeuLeu : 68 :!!|||||| !!:!!|||!:: !:!! !|||! !..!:!!||| !!|||:!!||| eLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeu 262941 : TCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTT : 262997 69 : TyrPheAlaLeuValLysGluAspIleIleSerLysLeuLysThrLeuGlyProIleS : 88 :!!.!!!.!|||! ! |||:!!.!! !! !||||||:!!..!|||||||||:!!. HisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuG 262998 : CATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCG : 263057 89 : erTyrCysPheGlyGlyGlyLeuAsnTyrAlaValLeuLeuLeuArgLysAsnAspIl : 107 !! ! !! |||! !||| !:!!||||||.!! !|||||||||!.!!..!!.||||| lyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIl 263058 : GTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATAT : 263114 108 : eArgTyrCysIleAspHisIleGluThrAspTrpLysAlaIleThrArgThrGlyAsp : 126 |!:! !|||:!:.!.|||:!::!! !|||||| !:!:|||||| !! !||| eGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAsp 263115 : ACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGAT : 263171 127 : ArgGlnValMetPheLysAsnAlaLysIleGlyArgIleIleSerGlyCysValAlaG : 146 !:!!:::!!|||.!.|||||||||||| !|||||| !:!::!!!.!! ! !||| GlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaI 263172 : CAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGA : 263231 147 : lyPheLeuGlnLeuSerThrIleSerPheCysThrValPheGlyValPheLysArgAr : 165 !|||:!!||| !|||! !!!:!!! ||| !||| !.! !! !! !!:! lePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnVa 263232 : TCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGT : 263288 166 : gIleLysIleGlyAsnGluSerMetGluIleTyrValLeuProPheProThrTyrLys : 184 !|||:!! !|||||||||!!!! :!! !:!!||||||! !|||..!|||||| lIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLys 263289 : GATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAA : 263345 185 : <-><->IleProValAspThrAsnProGlyHisAsnIleValLeuGlyPheGlnPheL : 202 ||||||||||||||||||||| !:!!.!.||| !!|||!.! ||||||| GluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheL 263346 : GAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTC : 263405 203 : euAlaAlaTyrIleMetSerAlaThrValValIleAlaPheSerLeuAlaThrValPh : 221 ||:!!!.!!:!|||:!:!!!||||||..!||| !||||||.!!:!!.!!.!!||||| euSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPh 263406 : TGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTT : 263462 222 : eAlaCysHisAlaIleGlyGlnLeuThrIleMetIleThrTrpIleGluGluPheVal : 240 |||| !!|||||| !|||||||||!.!:!::!!!!::!!|||||| !||||||||| eAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheVal 263463 : CGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTG : 263519 241 : AsnArgProGlnGluGluAsnLysAsnMetArgValAsnGluIleSerValIleIleG : 260 |||!:! !!::!!!:||||||||||||:!: ! !!!.!||||||.!!||||||:!!| AsnGlnSerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValG 263520 : AACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTG : 263579 261 : luHisHisLeuArgIleLeu{Se} >>>> Target Intron 1 >>>> {r}Ph : 268 ||||||||||||||:!!|||{||} 72 bp {|}|| luHisHisLeuArgValLeu{Se}++ ++{r}Ph 263580 : AACATCATCTGAGAGTTCTG{AG}gt.........................ag{T}TT : 263675 269 : eLeuGlyArgThrGluHisLeuLeuSerProIleCysPheMetGluMetPheLysAsn : 287 |:!!! !|||! !:!!:!!:!!:!!||| !!|||||||||:!!|||:!:|||||| ! eIleAspArgIleLysAsnValMetSerThrIleCysPheValGluLeuPheLysAla 263676 : CATAGATCGTATTAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCAAGGCT : 263732 288 : IleLeuSerIleCysMetLeuSerTyrCysIleLeuAla >>>> Target Intro : 301 ! |||..!||||||||||||.!!|||! !||||||.!! 764 bp ThrLeuAspIleCysMetLeuGlyTyrTyrIleLeuThr++ 263733 : ACGCTGGATATATGCATGCTAGGTTACTACATACTTACGgt................. : 263776 302 : n 2 >>>> GluTrpTyrGlyArgAspValArgValLeuGlyAlaTyrAlaPheSer : 316 |||||| ! .!!!..|||:::::: ||| !.!!||| !.!.! ! ++GluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIle 263777 : ........agGAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATA : 264583 317 : ValThrCysIleThrLeuAsnThrPheLeuIleCysTyrIleGlyGluValLeuSerG : 336 :!!! !! !!: ! !|||! !||||||!!:|||||||||||||||:!!|||!!!| LeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrG 264584 : CTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTG : 264643 337 : luLys >>>> Target Intron 3 >>>> CysLysLysIleSerAsnMetIle : 345 ||::: 78 bp |||||||||:!!.!!.!.:!!:!! luGln++ ++CysLysLysValGlyGluValVal 264644 : AGcaggt.........................agTGTAAGAAAGTTGGTGAGGTGGTT : 264748 346 : TyrMetThrAsnTrpTyrArgLeuSerGluLysAspIleLeuAsnLeuIleMetIleM : 365 ||||||:!!||||||||| !||| !! ! ||||||||||||:!!||||||:!:|||! TyrMetSerAsnTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLeuIleI 264749 : TACATGTCGAATTGGTATTACTTACCCTACAAAGATATCCTTGATCTGATTCTCATCA : 264808 366 : etIleArgSerGlyMetGluTyrLysMetThrAlaGlyLysIleIleAsnMetSerVa : 384 !::!!||||||.!!:!!! !!:!|||.!.|||||||||||||||:!!:!!||||||:! leLeuArgSerSerValValPheLysPheThrAlaGlyLysIleLeuHisMetSerMe 264809 : TTTTAAGATCCAGCGTGGTGTTTAAATTCACCGCTGGAAAGATACTTCACATGTCCAT : 264865 385 : lValThrPheGlyAsn >>>> Target Intron 4 >>>> IleIleLysThrI : 394 ! !||||||.!!:!! 80 bp :!!||||||:!! tTyrThrPheSerAsp++ ++ValIleLysSerS 264866 : GTACACATTCAGTGACgt.........................aggTAATCAAATCCT : 264975 395 : leLeuAlaTyrLeuAsnIleLeuArgGln : 403 !!!!.!!|||||||||:!!||||||||| erPheThrTyrLeuAsnLeuLeuArgGln 264976 : CTTTCACGTACTTAAACTTACTTCGCCAA : 265004 vulgar: AmOr43 10 403 . KQ414889.1 262825 265004 + 939 M 174 522 G 0 6 M 82 246 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 33 99 5 0 2 I 0 760 3 0 2 M 37 111 5 0 2 I 0 74 3 0 2 M 52 156 5 0 2 I 0 76 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262826 265004 939 + . gene_id 1 ; sequence AmOr43 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262826 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262826 263601 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 263673 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263672 263673 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 263674 263773 . + . KQ414889.1 exonerate:protein2genome:local exon 263674 263773 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263774 263775 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263774 264537 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264536 264537 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264538 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264726 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 3 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265004 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265004 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262826 265004 939 + . alignment_id 1 ; Query AmOr43 ; Align 262826 11 522 ; Align 263354 185 246 ; Align 263675 268 99 ; Align 264538 301 111 ; Align 264727 338 156 ; Align 264963 390 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 746 Query range: 8 -> 299 Target range: 274353 -> 275306 9 : IleGlnLysLysPheGlySerLeuAsnGluTyrSerIleGlnLeuAsnArgTrpPheS : 28 :!! !!!.|||! !||||||!:!!!:||||||:!:||||||||||||||||||! ValThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheL 274354 : GTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCT : 274411 29 : erLysThrIleGlyValTrpProLeuProSerSerThrSerLysLeuGluLysIleMe : 47 !||| !!||||||!.!||||||||| !!||| !!|||!!!|||!!!|||::!|||:! euLysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLe 274412 : TGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCT : 274468 48 : tThrLysIleLeuIlePheLeuCysTrpIleIleAlaLeuPheValIleIleSerSer : 66 ::!! ! :::|||||||||||||||::: !.!! !|||! !..!:!!||| !!||| uSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSer 274469 : TTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGC : 274525 67 : LeuLeuTyrPheAlaLeuValLysGluAspIleIleSerLysLeuLysThrLeuGlyP : 86 :!!!!!:!!.!! !|||||| ! |||..!:!! ! !||||||||| !||||||| IlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyP 274526 : ATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTC : 274585 87 : roIleSerTyrCysPheGlyGlyGlyLeuAsnTyrAlaValLeuLeuLeuArgLysAs : 105 ||:!!.!!:!!!! ||| !||||||:!!||||||.!!..!||||||||||||!..!! roLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLy 274586 : CTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAA : 274642 106 : nAspIleArgTyrCysIleAspHisIleGluThrAspTrpLysAlaIleThrArgThr : 124 .!!:|||||| !|||:!:!!:|||!!::!!|||||||||!:! !:!:|||||| !! sGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgPro 274643 : AGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCG : 274699 125 : GlyAspArgGlnValMetPheLysAsnAlaLysIleGlyArgIleIleSerGlyCysV : 144 ! !|||!:!|||||||||!!.||||||||||||||||||||| !:!!:!! !! ! GluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheC 274700 : GAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCT : 274759 145 : alAlaGlyPheLeuGlnLeuSerThrIleSerPheCysThrValPheGlyValPheLy : 163 !|||!.!|||:!!|||! !.!!..!:!!!!!!:!|||..!:!! !.! !! !! ysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMe 274760 : GTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTAT : 274816 164 : sArgArgIleLysIleGlyAsnGluSerMetGluIleTyrValLeuProPheProThr : 182 !!:!! !:!!:!!:!!|||||||||!!!! :!::!!:!!||||||! ! !.!! tGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAla 274817 : GCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCT : 274873 183 : TyrLys<-><->IleProValAspThrAsnProGlyHisAsnIleValLeuGlyPheG : 200 |||||| :!! !!|||||||||!:!||| !:!!.!.|||||||||!.!! | TyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerG 274874 : TACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGC : 274933 201 : lnPheLeuAlaAlaTyrIleMetSerAlaThrValValIleAlaPheSerLeuAlaTh : 219 |||||:!!:!!!.!!:!|||:!!!:!:!!!:!!.!||| !|||||||||||||||.! lnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAl 274934 : AATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGC : 274990 220 : rValPheAlaCysHisAlaIleGlyGlnLeuThrIleMetIleThrTrpIleGluGlu : 238 !|||||||||...|||||| !|||||||||!:!:!::!!!!:! !|||||| ||| aValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGlu 274991 : CGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAG : 275047 239 : PheValAsnArgProGlnGluGluAsnLysAsnMetArgValAsnGluIleSerValI : 258 |||||||||!.! !!::!!!::::|||||||||::: ::!||||||.!!|||: PheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValV 275048 : TTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGG : 275107 259 : leIleGluHisHisLeuArgIleLeu{Se} >>>> Target Intron 1 >>>> : 267 !!:!!|||||||||||||||:!!|||{||} 74 bp alValGluHisHisLeuArgValLeu{Se}++ + 275108 : TTGTCGAACATCATCTGAGGGTACTC{AG}gt.........................a : 275208 268 : {r}PheLeuGlyArgThrGluHisLeuLeuSerProIleCysPheMetGluMetPhe : 285 {|}|||:!!!.!|||! !||| !!:!!:!!!:!! !|||||||||||||||:!!||| +{r}PheIleAlaArgIleGluAspValMetAsnArgIleCysPheMetGluLeuPhe 275209 : g{T}TTCATAGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAATTGTTC : 275262 286 : LysAsnIleLeuSerIleCysMetLeuSerTyrCysIleLeu : 299 ||| !! !|||..!!!:|||||||||.!!|||! !|||||| LysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleLeu 275263 : AAGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTCTC : 275306 vulgar: AmOr43 8 299 . KQ414889.1 274353 275306 + 746 M 176 528 G 0 6 M 82 246 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274354 275306 746 + . gene_id 2 ; sequence AmOr43 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274354 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274354 275135 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274354 275306 746 + . alignment_id 2 ; Query AmOr43 ; Align 274354 9 528 ; Align 274888 185 246 ; Align 275211 268 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 745 Query range: 1 -> 299 Target range: 266586 -> 267555 2 : MetAlaAspAspIleAlaAlaIleGlnLysLysPheGlySerLeuAsnGluTyrSerI : 21 ||||||:!!!!: !!.!|||:!! !!!..!...!||||||!:!!!:||||||: MetAlaAsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerL 266587 : ATGGCTAACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCC : 266644 22 : leGlnLeuAsnArgTrpPheSerLysThrIleGlyValTrpProLeuProSerSerTh : 40 !:|||||||||||||||||| !||| !!||||||!.!||||||! ! !||| !|| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuTh 266645 : TGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCAC : 266701 41 : rSerLysLeuGluLysIleMetThrLysIleLeuIlePheLeuCysTrpIleIleAla : 59 |||||||||||||::!|||:!::!! ! !|||||| !!:!!|||!:: ! ! ! rSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIle 266702 : ATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATA : 266758 60 : LeuPheValIleIleSerSerLeuLeuTyrPheAlaLeuValLysGluAspIleIleS : 79 ||||||..!:!!||| !!!!!|||!!!:!!.!!!.!|||! ! ! |||..!||| !! LeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgT 266759 : CTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTA : 266818 80 : erLysLeuLysThrLeuGlyProIleSerTyrCysPheGlyGlyGlyLeuAsnTyrAl : 98 !!|||:!!|||..!!!!||||||:!:|||:!!!! |||! !||||||:!!||||||.! hrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrTh 266819 : CGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACAC : 266875 99 : aValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleAspHisIleGluThrAsp : 117 !..!||||||||||||!..!!.!!:|||||| !|||:!!!!:|||!!::!!|||||| rThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAsp 266876 : CACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGAT : 266932 118 : TrpLysAlaIleThrArgThrGlyAspArgGlnValMetPheLysAsnAlaLysIleG : 137 |||!:! !:!:|||||| !!! !|||!:!|||||||||!!.|||||||||!:!|||| TrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleG 266933 : TGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCG : 266992 138 : lyArgIleIleSerGlyCysValAlaGlyPheLeuGlnLeuSerThrIleSerPheCy : 156 ||||| !|||:!! !! ! !|||!.!|||:!!|||! !.!!..!:!!.!!!:!|| lyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCy 266993 : GTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTG : 267049 157 : sThrValPheGlyValPheLysArgArgIleLysIleGlyAsnGluSerMetGluIle : 175 |..!:!! !.! !! !! !!:!! !:!::!!:!!|||||||||!!!! ! :!! sValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleVal 267050 : TGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTA : 267106 176 : TyrValLeuProPheProThrTyrLys<-><->IleProValAspThrAsnProGlyH : 193 :!!:!!||||||! ! !!..!|||||| ||| !!|||||||||!:!||| !: HisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrA 267107 : CATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGA : 267166 194 : isAsnIleValLeuGlyPheGlnPheLeuAlaAlaTyrIleMetSerAlaThrValVa : 212 !!.!.|||||||||! !! ||||||:!!:!!!.!!:!|||:!!!:!:!!!:!||||| snGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValVa 267167 : ACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGT : 267223 213 : lIleAlaPheSerLeuAlaThrValPheAlaCysHisAlaIleGlyGlnLeuThrIle : 231 | !|||||||||||||||.!!|||||||||..!|||||| !|||||||||!:!:!: lGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerVal 267224 : CGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTG : 267280 232 : MetIleThrTrpIleGluGluPheValAsnArgProGlnGluGluAsnLysAsnMetA : 251 :!!!!:! !||||||:!!||||||||||||||| !!::!!!:...|||||||||:!: LeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValC 267281 : CTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTT : 267340 252 : rgValAsnGluIleSerValIleIleGluHisHisLeuArgIleLeu{Se} >>>> : 267 !! !!:!!:!!|||.!!|||:!!:!!|||||||||||||||:!!|||{||} ysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 267341 : GCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG}gt..... : 267392 268 : Target Intron 1 >>>> {r}PheLeuGlyArgThrGluHisLeuLeuSerPro : 278 69 bp {|}|||:!!!.!|||! !||| !:!!:!!||| ! ++{r}PheIleAlaArgIleGluSerValMetSerGlu 267393 : ....................ag{C}TTCATAGCACGTATCGAAAGTGTAATGAGCGAA : 267490 279 : IleCysPheMetGluMetPheLysAsnIleLeuSerIleCysMetLeuSerTyrCysI : 298 |||||||||||||||:!!|||||| !! !:!!..!||||||:!!|||||||||! !| IleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSerTyrTyrI 267491 : ATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCTATTATA : 267550 299 : leLeu : 299 ||||| leLeu 267551 : TCCTT : 267555 vulgar: AmOr43 1 299 . KQ414889.1 266586 267555 + 745 M 183 549 G 0 6 M 82 246 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266587 267555 745 + . gene_id 3 ; sequence AmOr43 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266587 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266587 267389 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267555 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266587 267555 745 + . alignment_id 3 ; Query AmOr43 ; Align 266587 2 549 ; Align 267142 185 246 ; Align 267460 268 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 703 Query range: 1 -> 341 Target range: 256601 -> 258387 2 : MetAlaAspAspIleAlaAlaIleGlnLysLysPheGlySerLeuAsnGluTyrSerI : 21 |||.!!:!!!!:.!!|||!.!:!!:!!! !!!.||| !|||! !!:!!!:||||||: MetThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerL 256602 : ATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTC : 256659 22 : leGlnLeuAsnArgTrpPheSerLysThrIleGlyValTrpProLeuProSerSerTh : 40 !!|||||||||||||||||| !||| !!||||||!.!||||||! ! !!|||||||| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 256660 : TCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCAC : 256716 41 : rSerLysLeuGluLysIleMetThrLysIleLeuIlePheLeuCysTrpIleIleAla : 59 |!!!! ||||||::!! !:!::!!! :!!|||! !.!!:!!|||!:: ! ! ! rThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIle 256717 : TACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATA : 256773 60 : LeuPheValIleIleSerSerLeuLeuTyrPheAlaLeuValLysGluAspIleIleS : 79 ||||||..!:!:||| !!!!!||||||:!! ! !|||! ! ! !!:..!.!! LeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrM 256774 : TTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAca : 256833 80 : erLysLeuLysThrLeuGlyProIleSerTyrCysPheGlyGlyGlyLeuAsnTyrAl : 98 |||:::|||......||||||!!:|||:!!!! .!! !.!! !! !||||||.! etLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrTh 256834 : tgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACAC : 256890 99 : aValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleAspHisIleGluThrAsp : 117 !:!!|||||||||!:! !!!.|||||||||||||||:!!!!:||||||||||||||| rLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAsp 256891 : GTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGAT : 256947 118 : TrpLysAlaIleThrArgThrGlyAspArgGlnValMetPheLysAsnAlaLysIleG : 137 |||!:! !:!:! !||| ! !|||!:!|||||||||.!.|||||||||!:!.!!| TrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheG 256948 : TGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCG : 257007 138 : lyArgIleIleSerGlyCysValAlaGlyPheLeuGlnLeuSerThrIleSerPheCy : 156 ||||| !:!::!! !! ! !|||!.!.!!:!!||| !.!!...... ||| lyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePh 257008 : GTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttctt : 257064 157 : sThrValPheGlyValPheLysArgArgIleLysIleGlyAsnGluSerMetGluIle : 175 ..! !! !.!:!! !! !..!! !||| ! :!:|||||||||!!!! ! :!: eValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleVal 257065 : cgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTG : 257121 176 : TyrValLeuProPheProThrTyrLys<-><->IleProValAspThrAsnProGlyH : 193 ||||||||| !! !!..!|||||| :!: !|||||| !!:!||| !: ArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrA 257122 : CGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGA : 257181 194 : isAsnIleValLeuGlyPheGlnPheLeuAlaAlaTyrIleMetSerAlaThrValVa : 212 !!.!.||||||:!! !.!.||| !! !:!!:!! !||| !!!!.!!!:!..!|| snGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrVa 257182 : ACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGT : 257238 213 : lIleAlaPheSerLeuAlaThrValPheAlaCysHisAlaIleGlyGlnLeuThrIle : 231 |! ! !||||||||||||.!!||||||||| !|||||| !||||||||||||:!: lSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrVal 257239 : TAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTG : 257295 232 : MetIleThrTrpIleGluGluPheValAsnArgProGlnGluGluAsnLysAsnMetA : 251 :!:!!::!!|||||| !||||||||||||..! !!::!.!.......|||...... LeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheP 257296 : CTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttc : 257355 252 : rgValAsnGluIleSerValIleIleGluHisHisLeuArgIleLeu{Se} >>>> : 267 !!!.:!!|||.!!||||||:!:|||||||||||||||:!:|||{||} roPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Se}++ 257356 : ctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt..... : 257407 268 : Target Intron 1 >>>> {r}PheLeuGlyArgThrGluHisLeuLeuSerPro : 278 76 bp {|}|||:!!..! !! !|||.!.:!!:!!!:!! ! ++{r}PheIleSerTyrIleGluGluValMetAsnArg 257408 : ....................ag{T}TTCATATCATATATCGAGGAAGTGATGAACCGA : 257512 279 : IleCysPheMetGluMetPheLysAsnIleLeuSerIleCysMetLeuSerTyrCysI : 298 |||||||||:!:|||:!!|||!:! !! |||:!!||||||||||||.!!|||! !| IleCysPheLeuGluLeuPheArgCysThrLeuAlaIleCysMetLeuGlyTyrTyrI 257513 : ATATGTTTTTTAGAGTTGTTTAGATGCACGCTGGCTATATGCATGCTGGGATACTACA : 257572 299 : leLeuAla >>>> Target Intron 2 >>>> GluTrpTyrGlyArgAspVal : 307 |||||||| 684 bp ||||||! ! !!::|||::: leLeuAla++ ++GluTrpSerThrGlnAspIle 257573 : TTCTTGCGgt.........................aggaATGGTCTACGCaagatatt : 258283 308 : ArgValLeuGlyAlaTyrAlaPheSerValThrCysIleThrLeuAsnThrPheLeuI : 327 ::: |||...:::||| !.!.! !:!!! !! ::::::...||| |||:::| GlnAsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValI 258284 : caaaatttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaa : 258343 328 : leCysTyrIleGlyGluValLeuSerGluLysCysLysLysIle : 341 |||||||||||||||||:!!|||!!!|||:!! :::||| leCysTyrIleGlyGluIleLeuThrGluGlnValProGluIle 258344 : tatgttACATAGGTGAAATATTAACAGAACAGGTACCagagatt : 258387 vulgar: AmOr43 1 341 . KQ414889.1 256601 258387 + 703 M 183 549 G 0 6 M 82 246 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256602 258387 703 + . gene_id 4 ; sequence AmOr43 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256602 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256602 257404 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258387 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258387 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256602 258387 703 + . alignment_id 4 ; Query AmOr43 ; Align 256602 2 549 ; Align 257157 185 246 ; Align 257482 268 99 ; Align 258265 301 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 562 Query range: 1 -> 267 Target range: 259721 -> 260525 2 : MetAlaAspAspIleAlaAlaIleGlnLysLysPheGlySerLeuAsnGluTyrSerI : 21 |||.!!:!! ! !.! !:!!:!!! !!..||| !|||! !!:!!!:||||||: MetThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerL 259722 : ATGACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCC : 259779 22 : leGlnLeuAsnArgTrpPheSerLysThrIleGlyValTrpProLeuProSerSerTh : 40 !!|||!!!|||||||||||| !||| !!||||||!.!||||||! ! !!|||||||| euGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 259780 : TCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCAC : 259836 41 : rSerLysLeuGluLysIleMetThrLysIleLeuIlePheLeuCysTrpIleIleAla : 59 |!!!!:!||||||||||||!!::!! ||||||||||||:!!|||!::! !! ! ! rThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIle 259837 : GACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATA : 259893 60 : LeuPheValIleIleSerSerLeuLeuTyrPheAlaLeuValLysGluAspIleIleS : 79 ||| !!..!:!:||| !!!!!:!!|||:!!.!. !|||! !||||||..!:!: !! LeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrM 259894 : CTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACA : 259953 80 : erLysLeuLysThrLeuGlyProIleSerTyrCysPheGlyGlyGlyLeuAsnTyrAl : 98 !||| !|||..!|||||||||:!!!!!:!!!! |||! !||| !!:!!||||||.! etLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrTh 259954 : TGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACAC : 260010 99 : aValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleAspHisIleGluThrAsp : 117 !..!|||||||||||| !..||||||! ! !|||:!:!!:|||:!:|||!.!||| rThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAsp 260011 : AACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGAT : 260067 118 : TrpLysAlaIleThrArgThrGlyAspArgGlnValMetPheLysAsnAlaLysIleG : 137 |||!:! !||||||||| ! !|||!:!.!.||||||!!.!:! !!||||||.!!| TrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheG 260068 : TGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCG : 260127 138 : lyArgIleIleSerGlyCysValAlaGlyPheLeuGlnLeuSerThrIleSerPheCy : 156 ||||| !:!!:!!!.!! ! !|||!.!|||:!!||| !.!!..!:!:!!!||||| lyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCy 260128 : GCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTG : 260184 157 : sThrValPheGlyValPheLysArgArgIleLysIleGlyAsnGluSerMetGluIle : 175 | !||| ! !:!! !! !..! !|||:!!:!:|||||||||!!!! ! :!! sLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal 260185 : TTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTT : 260241 176 : TyrValLeuProPheProThrTyrLys<-><->IleProValAspThrAsnProGlyH : 193 :!!:!!||||||! ! !!..!|||||| ||| !|||:!! !!:!||| !: HisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetA 260242 : CATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGA : 260301 194 : isAsnIleValLeuGlyPheGlnPheLeuAlaAlaTyrIleMetSerAlaThrValVa : 212 !!.!.|||||||||! ! ! ||||||:!!:!!!.!!:!|||:!!!:!:!!!:!..!|| snGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrVa 260302 : ACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGT : 260358 213 : lIleAlaPheSerLeuAlaThrValPheAlaCysHisAlaIleGlyGlnLeuThrIle : 231 | ! !||||||||||||.!!|||.!..!!..!|||||| !|||||||||!.!:!: lGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnVal 260359 : TGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTG : 260415 232 : MetIleThrTrpIleGluGluPheValAsnArgProGlnGluGluAsnLysAsnMetA : 251 :!:!!: !|||||| !|||||||||:!!..! !!::!.!...!!!.|||!!. ! LeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaP 260416 : CTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTC : 260475 252 : rgValAsnGluIleSerValIleIleGluHisHisLeuArgIleLeuSer : 267 ! !!!!.||||||.!!||||||:!!||||||||||||||| !|||!!! roPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeuThr 260476 : CTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTCACG : 260525 vulgar: AmOr43 1 267 . KQ414889.1 259721 260525 + 562 M 183 549 G 0 6 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259722 260525 562 + . gene_id 5 ; sequence AmOr43 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259722 260525 . + . KQ414889.1 exonerate:protein2genome:local exon 259722 260525 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259722 260525 562 + . alignment_id 5 ; Query AmOr43 ; Align 259722 2 549 ; Align 260277 185 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 443 Query range: 18 -> 400 Target range: 284523 -> 287252 19 : TyrSerIleGlnLeuAsnArgTrpPheSerLysThrIleGlyValTrpProLeuProS : 38 ||||||:!!|||:!!|||||||||||| !||| !!|||||||||||||||||| ! TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 39 : erSerThrSerLysLeuGluLysIleMetThrLysIleLeuIlePheLeuCysTrpIl : 57 !!!!..!!!!! ||||||||||||! :!! !:!!||| !!.:!! !!!! .! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 58 : eIleAlaLeuPheValIleIleSerSerLeuLeuTyrPheAlaLeuValLysGlu<-> : 76 !:!: ! !|||:!!:!::!! !!!!! !|||! ! !.!|||! !||| eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 77 : AspIleIleSerLysLeuLysThrLeuGlyProIleSerTyrCysPheGlyGlyGlyL : 95 |||:!! !!!!|||:!!|||! !:!!||||||:!:|||!:!|||.!. !!.!!.!: AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 96 : euAsnTyrAlaValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleAspHisIl : 114 !!!!.||| !:!!|||:!!! !||| ..! ! ||| !! ! |||:!: ! !!|| leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 115 : eGluThrAsp{Tr} >>>> Target Intron 1 >>>> {p}LysAlaIleThr : 122 |....!!|||{||} 1012 bp {|} :!! !!:: eArgAlaAsp{Tr}++ +-{p}LeuSerHisSer 284813 : TCGTGCGGAC{TG}gt.........................ac{G}CTTTCGCATAGt : 285848 123 : ArgThrGlyAspArgGlnValMetPheLysAsnAlaLysIleGlyArgIleIleSerG : 142 ::: :::|||::::::||| ! !:!|||!:!||||||||| !:!::!! GlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaI 285849 : caagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGA : 285908 143 : lyCysValAlaGlyPheLeuGlnLeuSerThrIleSerPheCysThrValPheGlyVa : 161 !! ! !|||||||||:!! ! ! !.!! !.!!! !!:! !||||||.!. !:! lePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLe 285909 : TCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTT : 285965 162 : lPheLysArgArgIleLys<->IleGlyAsnGluSerMetGluIleTyrValLeuPro : 179 !! !! ! !|||! :!! |||! !||||||!!!:!!..! ! ! !.!!!!||| uCysThrValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPhePro 285966 : GTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCG : 286022 180 : PheProThrTyrLysIleProValAspThrAsnProGlyHisAsnIleValLeuGlyP : 199 .!! ! ! ! :!! ! ! !|||!:!|||..! !.!.||||||! ! !. IleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheM 286023 : ATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCA : 286082 200 : heGlnPheLeuAlaAlaTyrIleMetSerAlaThrValValIleAlaPheSerLeuAl : 218 !.|||! !|||||||||!:!:!!!!:! !:!!..!..!||| !|||! !|||||||| etGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAl 286083 : TGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGC : 286139 219 : aThrValPheAlaCysHisAlaIleGlyGlnLeuThrIleMetIleThrTrpIleGlu : 237 |.!!||||||!.! |||!.! !||||||!!!! !|||:!::!:||| !:!:!!: aAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAsp 286140 : TGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGAT : 286196 238 : GluPheValAsnArgProGln<->GluGluAsnLysAsnMetArgValAsnGluIleS : 256 :!!.!!|||:!! !! !:!! ..!:!!... !!:!! !!.!! !.!...!:!:. LysLeuValAspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuG 286197 : AAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGG : 286256 257 : erValIleIleGluHisHisLeuArg >>>> Target Intron 2 >>>> Ile : 265 !!! !||||||||||||||||||!:! 488 bp !!: lyAspIleIleGluHisHisLeuLys-+ +-Met 286257 : GAGATATCATCGAGCATCATCTGAAGat.........................atATG : 286771 266 : LeuSerPheLeuGlyArgThrGluHisLeuLeuSerProIleCysPheMetGluMetP : 285 |||! ! :!! ! !|||!!: ! ! !..! !:!:|||!:! .!.! LeuPheGlyIleLeuPheThrAspGlyAsnArgAspAspLeuCysTyrTyrHisThrV 286772 : CTTTTTGGGATATTATTTACTGACGGTAACAGAGACGACTTGTGTTATTACCATACTG : 286831 286 : heLysAsnIleLeuSerIleCysMetLeuSerTyrCysIleLeuAlaGluTrpTyrGl : 304 ! ! ! |||:!!:!!.!! !|||! !|||! ! :!!!!! !|||||| ! alMetAlaIleIleAlaPheValMetTyrSerLeuSerValPhe***GluTrpGluGl 286832 : TAATGGCAATAATTGCATTCGTCATGTACTCGTTGTCAGTTTTCTAGGAATGGGAGCA : 286888 305 : yArgAspValArgValLeuGlyAlaTyrAlaPheSerValThrCysIleThrLeuAsn : 323 !!!!!!:..!! !! ! ! !.!!|||..! ! !:!!..!! !.!!|||!!!||| nSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerPheThrPheAsn 286889 : AAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCACGTTCAAC : 286945 324 : ThrPheLeuIleCysTyrIleGlyGluValLeuSerGluLys >>>> Target In : 338 ..!|||:!!:!!|||||||||||||||:!!|||||||||::: 74 b ValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286946 : GTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt.............. : 286992 339 : tron 3 >>>> CysLysLysIleSerAsnMetIleTyrMetThrAsnTrpTyrArg : 352 p ||| !|||:!!.!! ! !||||||! !:!!||||||||| ++CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArg 286993 : ...........agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGT : 287106 353 : LeuSerGluLysAspIleLeuAsnLeuIleMetIleMetIleArgSerGlyMetGluT : 372 ||| !!! !||| !! !..!||||||:!!|||.!. ! !|||..! ... LeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerI 287107 : TTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCA : 287166 373 : yrLysMetThrAlaGlyLysIleIleAsnMetSerValValThrPheGlyAsnIleIl : 391 |||:!:||||||||||||||||||:!!:!:|||:!! !!:!||| !!!:!:!:! leLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSe 287167 : TAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAG : 287223 392 : eLysThrIleLeuAlaTyrLeuAsnIle : 400 !! ! !! !|||:!!|||! !:!!:!: rIleIleAsnLeuSerTyrTyrHisLeu 287224 : TATCATAAATTTATCCTATTATCATTTG : 287252 vulgar: AmOr43 18 400 . KQ414889.1 284523 287252 + 443 M 57 171 G 0 3 M 42 126 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 49 147 G 0 3 M 77 231 G 0 3 M 20 60 5 0 2 I 0 484 3 0 2 M 73 219 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 287252 443 + . gene_id 6 ; sequence AmOr43 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284524 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286282 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286282 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286283 286284 . + . intron_id 2 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 286283 286770 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286769 286770 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 286771 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286771 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284524 287252 443 + . alignment_id 6 ; Query AmOr43 ; Align 284524 19 171 ; Align 284698 76 126 ; Align 285839 119 147 ; Align 285989 168 231 ; Align 286223 245 60 ; Align 286771 265 219 ; Align 287064 338 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 398 Query range: 0 -> 266 Target range: 236798 -> 237596 1 : MetMetAlaAspAspIleAlaAlaIleGlnLysLysPheGlySerLeuAsnGluTyrS : 20 |||! !||| ! ! !!.!!.!! !:!!! !!..!. !:!! !!:!!!:|||| MetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrS 236799 : ATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACA : 236856 21 : erIleGlnLeuAsnArgTrpPheSerLysThrIleGlyValTrpProLeuProSerSe : 39 ||:!!|||! !||||||||| ! !|||!:!||||||..!||| |||..!! erLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrp------ProGlnPh 236857 : GTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGG------CCACAGTT : 236907 40 : rThrSerLysLeuGluLysIleMetThrLysIleLeuIlePheLeuCysTrpIleIle : 58 !:!!|||!!.||||||!:!! !!!::!!::!||||||! ! ! :!!|||!::! ! ! eSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAla 236908 : CTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCA : 236964 59 : AlaLeuPheValIleIleSerSerLeuLeuTyrPheAlaLeuValLysGluAspIleI : 78 !|||||| !|||||| !!!!!! !|||:!!.!. !|||! !|||! ! !.!! IleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheT 236965 : ATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCT : 237024 79 : leSerLysLeuLysThrLeuGlyProIleSerTyrCysPheGlyGlyGlyLeuAsnTy : 97 !!!!|||:!!|||! !|||||| !!:!:|||:!!!! ! ! !! !:!!!:!|| yrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTy 237025 : ACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTA : 237081 98 : rAlaValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleAspHisIleGluThr : 116 |.!!:!!||||||||||||:::!!. !||||||:!!! !.!!:!!|||!!:|||||| rThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThr 237082 : CACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACC : 237138 117 : AspTrpLysAlaIleThrArgThrGlyAspArgGlnValMetPheLysAsnAlaLysI : 136 ||||||!:!.!!! |||||| ::::::||||||!!.||| !!||||||. AspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysP 237139 : GATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAAT : 237198 137 : leGlyArgIleIleSerGlyCysValAlaGlyPheLeuGlnLeuSerThrIleSerPh : 155 !!.!!||| ! :!! !! ! !.!! !|||:!!!!. !.!!! !:!!.!!!: heSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTy 237199 : TTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATA : 237255 156 : eCysThrValPheGlyValPheLysArgArgIleLysIleGlyAsnGluSerMetGlu : 174 !|||..!:!! !.! ! !! !! ! !:!! !:!!||||||:!!!!!! ! rCysValMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIle 237256 : TTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATC : 237312 175 : IleTyrValLeuProPheProThrTyrLys<-><->IleProValAspThrAsnProG : 192 :!: !|||||||||!!.|||! !|||||| :!!||||||||||||||| !! LeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrM 237313 : TTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTA : 237372 193 : lyHisAsnIleValLeuGlyPheGlnPheLeuAlaAlaTyrIleMetSerAlaThrVa : 211 !:!!:!!||||||:!! !! |||||||||:!!!.!!:!||| !!:! !!:!!. etAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAl 237373 : TGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGC : 237429 212 : lValIleAlaPheSerLeuAlaThrValPheAlaCysHisAlaIleGlyGlnLeuThr : 230 !:!!! !!.!.!.||||||.!!!:!!.!.!..!!! |||||| !|||||||||!:! aIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSer 237430 : GATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGC : 237486 231 : IleMetIleThrTrpIleGluGluPheValAsnArgProGlnGluGluAsnLysAsnM : 250 :!::!:!!: !! !||||||!!:||||||!:!..! !!::!.....!...|||:!! ValValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspA 237487 : GTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACG : 237546 251 : etArgValAsnGluIleSerValIleIleGluHisHisLeuArgIleLeu : 266 !.! !!:!!|||||| !!..!|||:!:|||.!.|||||||||:!:||| spHisPheAspGluIleProThrIleValGluGluHisLeuArgValLeu 237547 : ATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTG : 237596 vulgar: AmOr43 0 266 . KQ414889.1 236798 237596 + 398 M 34 102 G 2 0 M 148 444 G 0 6 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236799 237596 398 + . gene_id 7 ; sequence AmOr43 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236799 237596 . + . KQ414889.1 exonerate:protein2genome:local exon 236799 237596 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236799 237596 398 + . alignment_id 7 ; Query AmOr43 ; Align 236799 1 102 ; Align 236901 37 444 ; Align 237351 185 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 387 Query range: 17 -> 269 Target range: 232456 -> 233215 18 : GluTyrSerIleGlnLeuAsnArgTrpPheSerLysThrIleGlyValTrpProLeuP : 37 |||||||||||||||:!!|||||||||||| !! ! !!!!:|||!.!||||||! ! GluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgV 232457 : GAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTG : 232514 38 : roSerSerThrSerLysLeuGluLysIleMetThrLysIleLeuIlePheLeuCysTr : 56 !!!!..!||||||!:! !:!!:!!:!!:!:.!!|||:!:|||! !.!! !||| alThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHi 232515 : TTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCA : 232571 57 : pIleIleAlaLeuPheValIleIleSerSerLeuLeuTyrPheAlaLeuValLysGlu : 75 !:!: !:!!! ! !|||:!! !!!!!:!!|||!:!.!! !!!!! ! ! ! sSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThr 232572 : TTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACG : 232628 76 : AspIleIleSerLysLeuLysThrLeuGlyProIleSerTyrCysPheGlyGlyGlyL : 95 ..!:!! ..!!:!:!!|||:!!:!!||||||!!:|||:!!! !.!. !|||! !| SerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluL 232629 : AGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAAT : 232688 96 : euAsnTyrAlaValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleAspHisIl : 114 ||||||||..! !|||||| !!:! !|||||||||! !||||||:!:!!:!!.:! euAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnVa 232689 : TGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGT : 232745 115 : eGluThrAspTrpLysAlaIleThrArgThrGlyAspArgGlnValMetPheLysAsn : 133 ::!! !||||||::! !:!!! !!:! !!! ! !!|||.!.:!!|||!!.|||||| lLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsn 232746 : GAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAAC : 232802 134 : AlaLysIleGlyArgIleIleSerGlyCysValAlaGlyPheLeuGlnLeuSerThrI : 153 ||||||:!!|||||| |||:!! !! !!.!||| !! !:!!!!. !.!!..! AlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValG 232803 : GCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCG : 232862 154 : leSerPheCysThrValPheGlyValPheLysArgArgIleLysIleGlyAsnGluSe : 172 !||| ! ! !||| |||:!! !! !!!!! !.!! ! :!:||||||||||| lySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSe 232863 : GCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAG : 232919 173 : rMetGluIleTyrValLeuProPheProThrTyrLysIleProValAspThr<-><-> : 190 | ..!!!:||| !||||||! ! !! !|||! !! ! !:!!|||||| rTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPhe 232920 : TTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTC : 232976 191 : AsnProGlyHisAsnIleValLeuGlyPheGlnPheLeuAlaAlaTyrIleMetSerA : 209 !:!||| !:!!.!.|||:!!!!!! !.!.|||! !|||:!!!.!!:!|||:!!!:!: SerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnS 232977 : AGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACT : 233036 210 : laThrValValIleAlaPheSerLeuAlaThrValPheAlaCysHisAlaIleGlyGl : 228 !!..!..!||| !|||! !.!!|||!.!.!!|||.!.||| |||||| !||||| erValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGl 233037 : CCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACA : 233093 229 : nLeuThrIleMetIleThrTrpIleGluGluPheValAsnArgProGlnGluGluAsn : 247 ||||!.!:!::!!!!::!! :!:!!:!!:!!.|||:!! ! ! !:!!|||.!. nLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGlyGlnGluGlu 233094 : GCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAGGAGGAG : 233150 248 : LysAsnMetArgValAsnGluIleSerValIleIleGluHisHisLeuArgIleLeuS : 267 !:! :!: ! !!..:!!:!!.!! !!|||:!:|||||||||||||||! !|||! Arg---ValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeuA 233151 : AGA---GTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTAA : 233207 268 : erPheLeu : 269 !!!:!||| rgTyrLeu 233208 : GGTATTTG : 233215 vulgar: AmOr43 17 269 . KQ414889.1 232456 233215 + 387 M 172 516 G 0 6 M 59 177 G 1 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232457 233215 387 + . gene_id 8 ; sequence AmOr43 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232457 233215 . + . KQ414889.1 exonerate:protein2genome:local exon 232457 233215 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 232457 233215 387 + . alignment_id 8 ; Query AmOr43 ; Align 232457 18 516 ; Align 232979 190 177 ; Align 233156 250 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 316 Query range: 7 -> 266 Target range: 226897 -> 227677 8 : AlaIleGlnLysLysPheGlySerLeuAsnGluTyrSerIleGlnLeuAsnArgTrpP : 27 |||! !:!!!!. ! !:! !..!! ! .!. |||||||||||||||||||||. AlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpL 226898 : GCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGC : 226955 28 : heSerLysThrIleGlyValTrpProLeuProSerSerThrSerLysLeuGluLysIl : 46 !.! !||| !!:!!|||:!!||||||! ! !! !!!.!!:!|||::!:!!! !!:! euLeuLysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCy 226956 : TGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATG : 227012 47 : eMetThrLysIleLeuIlePheLeuCysTrpIleIleAlaLeuPheValIleIleSer : 65 !.!.:!! !:!::!! !|||||||||!:: :!: ! !|||! !:!::!!||| sPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSer 227013 : TTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCG : 227069 66 : SerLeuLeuTyrPheAlaLeuValLysGluAspIleIleSerLysLeuLysThrLeuG : 85 ||| !|||||| ! !.!|||! ! !:!!! ! ! !!:!! !||||||! !:!!| SerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleG 227070 : AGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCG : 227129 86 : lyProIleSerTyrCysPheGlyGlyGlyLeuAsnTyrAlaValLeuLeuLeuArgLy : 104 |||||!!:|||!:!! ! !..! !|||!!.|||:!!:!!||| !!!!!.!:! lyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGl 227130 : GTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGA : 227186 105 : sAsnAspIleArgTyrCysIleAspHisIleGluThrAspTrpLysAlaIleThrArg : 123 !:!!||||||! ! ! |||:!!!!:!..|||:!! !||||||||| !|||! ! ! uAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyr 227187 : GGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATAC : 227243 124 : ThrGlyAspArgGlnValMetPheLysAsnAlaLysIleGlyArgIleIleSerGlyC : 143 !! !||||||.!.|||||| ! ! ! !!||| ! !||||||! !:!:! ! ! LeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrI 227244 : CTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTA : 227303 144 : ysValAlaGlyPheLeuGlnLeuSerThrIleSerPheCysThrValPheGlyValPh : 162 ! !.!! !|||:!! ||| ::: ||| ! !||| ! !:!! leCysThrPhePheValPheSerSerPheValPhePheTyrIleValValProIleAs 227304 : TTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAA : 227360 163 : eLysArgArgIleLysIleGlyAsnGluSerMetGluIleTyrValLeuProPhePro : 181 ! !!!!!:!! !! ! !:!!! !!:! ... ! ! !:!!||||||||| nAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPhePro 227361 : CGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCG : 227417 182 : ThrTyrLysIleProValAspThr<-><->AsnProGlyHisAsnIleValLeuGlyP : 199 ! |||||| !!.!|||..! !:!||| !:!!.!.||| !!!!!..! PheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerV 227418 : TTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGG : 227477 200 : heGlnPheLeuAlaAlaTyrIleMetSerAlaThrValValIleAlaPheSerLeuAl : 218 ! ||||||:!!.!!!.! !:!::!! !!.!..!..! ! !|||! !|||:!!|| alGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAl 227478 : TACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGC : 227534 219 : aThrValPheAlaCysHisAlaIleGlyGlnLeuThrIleMetIleThrTrpIleGlu : 237 |.!!:!!.!!||| !|||||| !||||||:!! !:!::!!:!::!!|||:!:! ! aAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGly 227535 : AGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGA : 227591 238 : GluPheValAsnArgProGlnGluGluAsnLysAsnMetArgValAsnGluIleSerV : 257 .!.!!.:!!:!! !! ! !!!: !!:!|||!..:!! ! :!!..!|||:!! HisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAsp---AspArgIleAlaS 227592 : CATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGAT---GATAGAATCGCTA : 227648 258 : alIleIleGluHisHisLeuArgIleLeu : 266 !|||:!! ||||||:!!||||||||| erIleValThrHisHisValArgIleLeu 227649 : GCATCGTCACTCACCACGTTCGAATATTG : 227677 vulgar: AmOr43 7 266 . KQ414889.1 226897 227677 + 316 M 182 546 G 0 6 M 62 186 G 1 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226898 227677 316 + . gene_id 9 ; sequence AmOr43 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226898 227677 . + . KQ414889.1 exonerate:protein2genome:local exon 226898 227677 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226898 227677 316 + . alignment_id 9 ; Query AmOr43 ; Align 226898 8 546 ; Align 227450 190 186 ; Align 227636 253 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 312 Query range: 18 -> 266 Target range: 278576 -> 279338 19 : TyrSerIleGlnLeuAsnArgTrpPheSerLysThrIleGlyValTrpProLeuProS : 38 ||||||:!!|||:!!|||||||||||| !||| !!|||||||||||||||||| ! TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 39 : erSerThrSerLysLeuGluLysIleMetThrLysIleLeuIlePheLeuCysTrpIl : 57 !!!!..!!!!! ||||||||||||! :!! !:!!||| !!.:!! !!!! .! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 58 : eIleAlaLeuPheValIleIleSerSerLeuLeuTyrPheAlaLeuValLysGlu<-> : 76 !:!: ! !|||:!!:!::!! !!!!! !|||! ! !.!|||! !||| eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 77 : AspIleIleSerLysLeuLysThrLeuGlyProIleSerTyrCysPheGlyGlyGlyL : 95 |||:!! !!!!|||:!!|||! !:!!||||||:!!|||!:!||| !!.! !: AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 96 : euAsnTyrAlaValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleAspHisIl : 114 !!!!.||| !:!!|||:!!! !||| ..! ! ||| !! ! |||:!::!! !!|| leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 115 : eGluThrAspTrpLys<-><-><->AlaIleThrArgThrGlyAspArgGlnValMet : 130 |...|||||||||... :!! ! ::: :::|||::::::||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 131 : PheLysAsnAlaLysIleGlyArgIleIleSerGlyCysValAlaGlyPheLeuGlnL : 150 ! !:!|||!:!||||||||| !:!::!! !! ! !|||||||||:!! ! ! ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 151 : euSerThrIleSerPheCysThrValPheGlyValPheLysArgArgIleLys<->Il : 168 !.!! !:!!! !!:! !.!!|||.!. !:!!||| ! !|||! :!! || erGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIl 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCAT : 279039 169 : eGlyAsnGluSerMetGluIleTyrValLeuProPheProThrTyrLysIleProVal : 187 |! !||||||!!!:!!..! ! ! !.!!!!|||.!! ! ! ! :!! ! ! eAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 279040 : CGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCG : 279096 188 : AspThrAsnProGlyHisAsnIleValLeuGlyPheGlnPheLeuAlaAlaTyrIleM : 207 !|||!:!|||..! !.!.||||||! ! !.!.|||! !|||||||||!:!:!!: ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValL 279097 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTT : 279156 208 : etSerAlaThrValValIleAlaPheSerLeuAlaThrValPheAlaCysHisAlaIl : 226 !:! !:!!..!..!||| !|||! !|||||| !.!!||||||!.! |||!.! euTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCy 279157 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTG : 279213 227 : eGlyGlnLeuThrIleMetIleThrTrpIleGluGluPheValAsnArgProGln<-> : 245 !||||||!!!! !|||:!::!:||| !:!:!!::!!.!!:!!:!! !! !:!! sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLysGly 279214 : TGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGG : 279270 246 : GluGluAsnLysAsnMetArgValAsnGluIleSerValIleIleGluHisHisLeuA : 264 ..!:!!!:! !!:!! !!.!! !.!...!:!:.!!! !||||||||||||||||||! ArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuL 279271 : AGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGA : 279330 265 : rgIleLeu : 266 :!|||||| ysIleLeu 279331 : AGATACTG : 279338 vulgar: AmOr43 18 266 . KQ414889.1 278576 279338 + 312 M 57 171 G 0 3 M 44 132 G 0 9 M 48 144 G 0 3 M 77 231 G 0 3 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 279338 312 + . gene_id 10 ; sequence AmOr43 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278577 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279338 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278577 279338 312 + . alignment_id 10 ; Query AmOr43 ; Align 278577 19 171 ; Align 278751 76 132 ; Align 278892 120 144 ; Align 279039 168 231 ; Align 279273 245 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 282 Query range: 300 -> 405 Target range: 277371 -> 277842 301 : GluTrpTyrGlyArgAspValArgValLeuGlyAlaTyrAlaPheSerValThrCysI : 320 ||||||! !! !!!!||||||!:!..!:!! !.!!:!! !.!.! !:!!! !! !! GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 321 : leThrLeuAsnThrPheLeuIleCysTyrIleGlyGluValLeuSerGluLys >>> : 338 !: ...||| ||| !:!!|||||||||||||||:!!|||!!!|||:!! etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 339 : > Target Intron 1 >>>> CysLysLysIleSerAsnMetIleTyrMetThrA : 349 72 bp |||||||||:!!.!!.!.:!!:!!|||||||||| ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 350 : snTrpTyrArgLeuSerGluLysAspIleLeuAsnLeuIleMetIleMetIleArgSe : 368 |||||||| !||| !!!!:||||||||||||||||||:!!:!:|||!!: !||||| snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 369 : rGlyMetGluTyrLysMetThrAlaGlyLysIleIleAsnMetSerValValThrPhe : 387 |.!!::: |||:::||||||||||||:::|||...||||||||| !|||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 388 : GlyAsn >>>> Target Intron 2 >>>> IleIleLysThrIleLeuAlaTy : 397 |||:!! 84 bp :!!|||||||||! !!!!||||| GlyAsp++ ++ValIleLysThrThrPheAlaTy 277703 : GGCGATgt.........................agGTAATAAAAACCACTTTCgcgta : 277816 398 : rLeuAsnIleLeuArgGlnMetThr : 405 |||||||||||||||||||! !||| rLeuAsnIleLeuArgGlnThrThr 277817 : tttaaatattctacgCCAAACGACG : 277842 vulgar: AmOr43 300 405 . KQ414889.1 277371 277842 + 282 M 37 111 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277842 282 + . gene_id 11 ; sequence AmOr43 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277842 282 + . alignment_id 11 ; Query AmOr43 ; Align 277372 301 111 ; Align 277555 338 156 ; Align 277795 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 240 Query range: 282 -> 405 Target range: 254012 -> 254567 283 : GluMetPheLysAsnIleLeuSerIleCysMetLeuSerTyrCysIleLeuAla---- : 301 ...|||...||||||||| :::... |||:::||||||#### SerMetIleLysAsnIleGluAsnPhePheGlyThrTyrLysCysValLeuAla#### 254013 : tcgatgataaaaaatatcgaaaatttcttcggaacgtataaatgtgtgcttgctTCTA : 254069 302 : -GluTrpTyrGlyArgAspValArgValLeuGlyAlaTyrAlaPheSerValThrCys : 319 #|||||| ! !!!!|||!.!!:!:!!||| !.!!||| ! ! !!!:!!..!..! #GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAla 254070 : GGAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCT : 254126 320 : IleThrLeuAsnThrPheLeuIleCysTyrIleGlyGluValLeuSerGluLys >> : 338 :!!..! ||||||||||||||||||||||||.!!!!: !|||!!!|||:!! ValValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 254127 : GTTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt.. : 254185 339 : >> Target Intron 1 >>>> CysLysLysIleSerAsnMetIleTyrMetThr : 348 92 bp ||| !|||:!!.!!.!.:!!:!!||||||||| ++CysLeuLysValGlyGluValValTyrMetThr 254186 : .......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACA : 254305 349 : AsnTrpTyrArgLeuSerGluLysAspIleLeuAsnLeuIleMetIleMetIleArgS : 368 :!!|||||| !||| !!:!!!:! ||||||:!!||||||:!!|||!!:! !|||| AspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgS 254306 : GATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGAT : 254365 369 : erGlyMetGluTyrLysMetThrAlaGlyLysIleIleAsnMetSerValValThrPh : 387 ||..!:!!! !:!!!!:|||||||||||||||...:::||||||:!! !||||| erAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPh 254366 : CGAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTT : 254422 388 : eGlyAsn >>>> Target Intron 2 >>>> IleIleLysThrIleLeuAlaT : 397 ||||:!! 89 bp :!!:!!|||||| !!!!|||| eGlyAsp++ ++ValValLysThrGlyPheAlaT 254423 : CGGCGATgt.........................agGTAGTAAAAACAGGATTCGCCT : 254541 398 : yrLeuAsnIleLeuArgGlnMetThr : 405 ||||||||!!:||| !!||||||:!! yrLeuAsnMetLeuCysGlnMetSer 254542 : ACTTGAATATGCTTTGTCAAATGTCC : 254567 vulgar: AmOr43 282 405 . KQ414889.1 254012 254567 + 240 M 18 54 F 0 5 M 37 111 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254013 254567 240 + . gene_id 12 ; sequence AmOr43 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254013 254182 . + . KQ414889.1 exonerate:protein2genome:local exon 254013 254182 . + . insertions 0 ; deletions 0 ; frameshifts 5 KQ414889.1 exonerate:protein2genome:local splice5 254183 254184 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254183 254274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254273 254274 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254275 254430 . + . KQ414889.1 exonerate:protein2genome:local exon 254275 254430 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254431 254432 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254431 254519 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 254518 254519 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254520 254567 . + . KQ414889.1 exonerate:protein2genome:local exon 254520 254567 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254013 254567 240 + . alignment_id 12 ; Query AmOr43 ; Align 254013 283 54 ; Align 254072 301 111 ; Align 254275 338 156 ; Align 254520 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 216 Query range: 19 -> 213 Target range: 294690 -> 295278 20 : SerIleGlnLeuAsnArgTrpPheSerLysThrIleGlyValTrpProLeu<->ProS : 38 |||:!!:!!! ! !||| !!.!.! !||| !!||||||:!!||||||||| !| SerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrS 294691 : AGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACA : 294748 39 : erSerThrSerLysLeuGluLysIleMetThrLysIleLeuIlePheLeuCysTrpIl : 57 || !||||||||||||.!.|||:!!:!::!!! !||||||||| ! !||| !:! erHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLe 294749 : GTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTT : 294805 58 : eIleAlaLeuPheValIleIleSerSerLeuLeuTyrPheAlaLeuValLysGluAsp : 76 :! !!.!|||||||||:!!:!: !!!!! !! !!:!! !!.!!!! ! :::::: uThrValLeuPheValLeuValProCysGlyTyrPheCysValPheHisValLysAsn 294806 : GACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaac : 294862 77 : IleIleSerLysLeuLysThrLeuGlyProIleSerTyrCysPheGlyGlyGlyLeuA : 96 ::: |||:!!||| !|||||||||:!! !|||! !.!. !..! !|||! ValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuA 294863 : gtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCA : 294922 97 : snTyrAlaValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleAspHisIleGl : 115 ..|||::! !|||:!!|||!:!! ! !! .!!!:!:!!||||||!!: !!||||| rgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCysIleGluAspIleGl 294923 : GGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGA : 294979 116 : uThrAspTrpLysAlaIleThrArgThrGlyAspArgGlnValMetPheLysAsnAla : 134 |!.!||||||||| !||| !!.! !!! ! !!||| !:!!|||.!!||||||||| uAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIleMetIleLysAsnAla 294980 : GAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCG : 295036 135 : LysIleGlyArgIleIleSerGlyCysValAlaGlyPheLeuGlnLeuSerThrIleS : 154 ! !:!! !!:!! !!:!!!! !..! !!.!! !.!.:!! ! !|||.!!:!:| MetValThrGlnArgMetThrValAlaPheThrIleIleIleTyrSerSerAlaValS 295037 : ATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGT : 295096 155 : erPheCysThrValPheGlyValPheLysArgArgIleLysIleGlyAsnGluSerMe : 173 ||!:! !.!!:!! |||...... :!::!! ..!!!.:!!!:!! erTyrHisAlaIleValProPhePheSerAsnAlaLeuGlu---AsnLysLysAsnAs 295097 : CGTATCACGCCATTGtgccatttttttcaaacgctTTGGAG---AACAAGAAGAATAA : 295150 174 : tGluIleTyrValLeuProPheProThrTyrLysIleProValAsp<-><->ThrAsn : 190 !||| !!.!||||||.!!||| !|||:!!:!! !|||||| :!!!:! nThrIleArgAlaLeuProIleProGlyTyrGluLeuPheValAspAlaTyrSerSer 295151 : TACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGT : 295207 191 : ProGlyHisAsnIleValLeuGlyPheGlnPheLeuAlaAlaTyrIleMetSerAlaT : 210 ||| !:!!.!.|||:!! ! ! !! |||:!! !:!!!:!.!!:!:!:! !| ProThrTyrGluIleIleArgThrHisLeuPheValTyrSerPhePheValAsnLysT 295208 : CCTACCTACGAGATCATAAGAACTCATCTCTTTGTTTACTCGTTCTTCGTCAACAAAA : 295267 211 : hrValValIle : 213 ||! !|||:!! hrGlyValLeu 295268 : CTGGTGTCCTA : 295278 vulgar: AmOr43 19 213 . KQ414889.1 294690 295278 + 216 M 17 51 G 0 3 M 131 393 G 1 0 M 20 60 G 0 6 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294691 295278 216 + . gene_id 13 ; sequence AmOr43 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294691 295278 . + . KQ414889.1 exonerate:protein2genome:local exon 294691 295278 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294691 295278 216 + . alignment_id 13 ; Query AmOr43 ; Align 294691 20 51 ; Align 294745 37 393 ; Align 295138 169 60 ; Align 295204 189 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 214 Query range: 300 -> 396 Target range: 238411 -> 238805 301 : GluTrpTyrGlyArgAspValArgValLeuGlyAlaTyrAlaPheSerValThrCysI : 320 |||||| ! !!!!|||!.!!:!:!!||| !.!!||| ! ! :!!:!!..!..!| GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheValAlaLeuValAlaI 238412 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTGTAGCACTCGTTGCTA : 238469 321 : leThrLeuAsnThrPheLeuIleCysTyrIleGlyGluValLeuSerGluLys >>> : 338 ||..!! !|||||||||:!!:!!|||||||||.!!||| !|||!!!|||:!! leValSerAsnThrPheIleLeuCysTyrIleSerGluArgLeuThrGluGln++ 238470 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGAAAGGCTGACAGAACAGgt... : 238525 339 : > Target Intron 1 >>>> CysLysLysIleSerAsnMetIleTyrMetThrA : 349 106 bp ||| !|||:!!.!!.!.:!!:!!|||||||||: ++CysLeuLysValGlyGluValValTyrMetThrA 238526 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 238662 350 : snTrpTyrArgLeuSerGluLysAspIleLeuAsnLeuIleMetIleMetIleArgSe : 368 !!|||||| !||| !!:!!!:! ||||||:!!||||||:!!|||!!:! !||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSe 238663 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATC : 238719 369 : rGlyMetGluTyrLysMetThrAlaGlyLysIleIleAsnMetSerValValThrPhe : 387 |..!:!!! !|||:!:||||||||||||:!!:!!:!!||||||:!! !|||||| rAsnValValValLysValThrAlaGlyLysValLeuHisMetSerLeuTyrThrPhe 238720 : GAACGTGGTCGTTAAAGTCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTC : 238776 388 : GlyAsnIleIleLysThrIleLeuAla : 396 |||:!!:!!! !:!!|||! !|||||| GlyAspValSerGluThrAsnLeuAla 238777 : GGCGATGTAAGTGAAACTAATCTTGCT : 238805 vulgar: AmOr43 300 396 . KQ414889.1 238411 238805 + 214 M 37 111 5 0 2 I 0 102 3 0 2 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238412 238805 214 + . gene_id 14 ; sequence AmOr43 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 238412 238522 . + . KQ414889.1 exonerate:protein2genome:local exon 238412 238522 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238523 238524 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238523 238628 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 238627 238628 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238629 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238629 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238412 238805 214 + . alignment_id 14 ; Query AmOr43 ; Align 238412 301 111 ; Align 238629 338 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 196 Query range: 278 -> 400 Target range: 280025 -> 280465 279 : IleCysPheMetGluMetPheLysAsnIleLeuSerIleCysMetLeuSerTyrCysI : 298 :!!|||!:!.!..!.!!: ! ! ! ! !:!!:!!.!! !|||! !|||! ! : LeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerLeuSerV 280026 : TTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGTTGTCAG : 280083 299 : leLeuAlaGluTrpTyrGlyArgAspValArgValLeuGlyAlaTyrAlaPheSerVa : 317 !!!!! !|||||| ! !!.!|||!.!! !! ! ! !.!!||| !.!.! !:! alPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLe 280084 : TTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCT : 280140 318 : lThrCysIleThrLeuAsnThrPheLeuIleCysTyrIleGlyGluValLeuSerGlu : 336 !! !! !:!!|||!!!|||..!|||:!!:!!|||||||||||||||:!!||||||||| uIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGlu 280141 : CATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAA : 280197 337 : Lys >>>> Target Intron 1 >>>> CysLysLysIleSerAsnMetIleTy : 346 ::: 74 bp ||| !|||:!!.!! ! !|| Gln++ ++CysLeuLysValGlyValSerThrTy 280198 : Caggt.........................agTGCTTAAAAGTCGGCGTGTCAACTTA : 280301 347 : rMetThrAsnTrpTyrArgLeuSerGluLysAspIleLeuAsnLeuIleMetIleMet : 365 ||||! !:!!|||||||||||| !!! !||| ! !! !..!||||||:!!|||.!. rMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePhe 280302 : CATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTC : 280358 366 : IleArgSerGlyMetGluTyrLysMetThrAlaGlyLysIleIleAsnMetSerValV : 385 ! !|||..! ... |||:!:||||||||||||||||||:!!:!:|||:!! AlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuS 280359 : GCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAA : 280418 386 : alThrPheGlyAsnIleIleLysThrIleLeuAlaTyrLeuAsnIle : 400 !!:!||| !!!:!:!:! !! ! !! !|||:!!|||! !:!!:!: erSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280419 : GCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: AmOr43 278 400 . KQ414889.1 280025 280465 + 196 M 59 177 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280026 280465 196 + . gene_id 15 ; sequence AmOr43 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280026 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280026 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280026 280465 196 + . alignment_id 15 ; Query AmOr43 ; Align 280026 279 177 ; Align 280277 338 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 328 -> 390 Target range: 272990 -> 273176 329 : TyrIleGlyGluValLeuSerGluLysCysLysLysIleSerAsnMetIleTyrMetT : 348 |||::: ::: ||| :::||||||||||||....!.:!::!!||||||| TyrLeuProLysLysAsnSer***GlnCysLysLysIleGlyGluValValTyrMetT 272991 : TACttaccgaagaaaaattcttaacagtgtaaaaaaattggcGAGGTAGTTTACATGA : 273048 349 : hrAsnTrpTyrArgLeuSerGluLysAspIleLeuAsnLeuIleMetIleMetIleAr : 367 ||||||||||| !||| !!! ||||||||||||:!!||||||:!!|||!!: !|| hrAsnTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerAr 273049 : CGAACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAG : 273105 368 : gSerGlyMetGluTyrLysMetThrAlaGlyLysIleIleAsnMetSerValValThr : 386 |!!!.!!:!:! ! !|||!!:|||||||||!:!|||:!! !||||||||| !||| gCysSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThr 273106 : ATGCAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACG : 273162 387 : PheGlyAsnIle : 390 ||||||:!!:!! PheGlyAspVal 273163 : TTCGGCGATGTA : 273176 vulgar: AmOr43 328 390 . KQ414889.1 272990 273176 + 167 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272991 273176 167 + . gene_id 16 ; sequence AmOr43 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272991 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 272991 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272991 273176 167 + . alignment_id 16 ; Query AmOr43 ; Align 272991 329 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 278 -> 390 Target range: 301620 -> 302036 279 : IleCysPheMetGluMetPheLysAsnIleLeuSerIleCysMetLeuSerTyrCysI : 298 :!!||| ::: |||::::::! !|||!:! ! .!.||| !! ! LeuCysAlaValIleLysPheGluSerThrLeuAsnAlaLysPheLeuArgValIle* 301621 : CTCTGCgctgtaattaaatttgaatctACTTTAAATGCAAAGTTTTTACGAGTAATTT : 301678 299 : leLeuAlaGluTrpTyrGlyArgAspValArgValLeuGlyAlaTyrAlaPheSerVa : 317 !!!! !|||||| ! ..!!!!|||..!! !!.!:!! !.!!!:! ! ! !:! **Phe***GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLe 301679 : GATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTT : 301735 318 : lThrCysIleThrLeuAsnThrPheLeuIleCysTyrIleGlyGluValLeuSerGlu : 336 !|||! .!!|||!!!|||! !|||:!!.!!|||||||||||||||:!!||||||||| uThrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGlu 301736 : AACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAA : 301792 337 : Lys >>>> Target Intron 1 >>>> CysLysLysIleSerAsnMetIleTy : 346 :!! 80 bp |||!..:!!|||.!!::: || Gln++ ++CysSerGlnIleGlySerAlaSerTy 301793 : CAGgt.........................agTGTAGCCAAATTGGTTCAGCATCGTA : 301902 347 : rMetThrAsnTrpTyrArgLeuSerGluLysAspIleLeuAsnLeuIleMetIleMet : 365 | !! !:!!||||||!.!||| !!! !||| !! !:!!||||||:!::!!! rGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSer 301903 : CGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGC : 301959 366 : IleArgSerGlyMetGluTyrLysMetThrAlaGlyLysIleIleAsnMetSerValV : 385 :!:! !||| ! ! |||:!:||||||||||||||||||:!!:!:|||:!! ValIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuA 301960 : GTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGA : 302019 386 : alThrPheGlyAsnIle : 390 !||||||.!!::!:!! snThrPheSerSerVal 302020 : ATACATTCAGCTCTGTA : 302036 vulgar: AmOr43 278 390 . KQ414889.1 301620 302036 + 167 M 59 177 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301621 302036 167 + . gene_id 17 ; sequence AmOr43 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301621 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301621 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301621 302036 167 + . alignment_id 17 ; Query AmOr43 ; Align 301621 279 177 ; Align 301878 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 309 -> 390 Target range: 234830 -> 235147 310 : LeuGlyAlaTyrAlaPheSerValThrCysIleThrLeuAsnThrPheLeuIleCysT : 329 |||..!:!!|||!.!.!! ! !..!! !!!:|||!!.||| |||:::...|||| LeuAlaSerTyrValIleValTyrValSerMetThrPheAsnIlePheIlePheCysT 234831 : ttagCTTCATACGTCATCGTGTACGTGTCCATGACATTtaatatattcatattttgtt : 234888 330 : yrIleGlyGluValLeuSerGluLysCysLysLysIle{Se} >>>> Target In : 342 |||||||||||..!|||!!!|||:!! !..! !{!.} 74 b yrIleGlyGluThrLeuThrGluGlnValGlySer***{Ly}++ 234889 : ACATCGGAGAGACGCTTACAGAGCAGGTAGGATCATGA{AA}gt.............. : 234931 343 : tron 1 >>>> {r}AsnMetIleTyrMetThrAsnTrpTyrArgLeuSerGluLys : 356 p {!}.!.! :!:|||||||||.!.|||||||||||| !!.!.||| -+{s}GluLysValTyrMetThrGluTrpTyrArgLeuProHisLys 234932 : ...........gg{A}GAAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATAAA : 235043 357 : AspIleLeuAsnLeuIleMetIleMetIleArgSerGlyMetGluTyrLysMetThrA : 376 ! !|||..!|||:!!||||||!!: !||||||.!!|||! ! |||!!:|||| ThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrA 235044 : ACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCACCG : 235103 377 : laGlyLysIleIleAsnMetSerValValThrPheGlyAsnIle : 390 ||||||||.!!:!!.!.|||||||||!.!|||||||||:!!:!: laGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235104 : CTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: AmOr43 309 390 . KQ414889.1 234830 235147 + 166 M 32 96 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234831 235147 166 + . gene_id 18 ; sequence AmOr43 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234831 234928 . + . KQ414889.1 exonerate:protein2genome:local exon 234831 234928 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234929 234930 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234929 235002 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 235001 235002 . + . intron_id 0 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 235003 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 235003 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234831 235147 166 + . alignment_id 18 ; Query AmOr43 ; Align 234831 310 96 ; Align 235004 343 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 336 -> 395 Target range: 244655 -> 244832 337 : LysCysLysLysIleSerAsnMetIleTyrMetThrAsnTrpTyrArgLeuSerGluL : 356 :!!||| !|||:!!.!!.!.:!!:!!|||||||||:!!|||||| !||| !!:!!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 357 : ysAspIleLeuAsnLeuIleMetIleMetIleArgSerGlyMetGluTyrLysMetTh : 375 :! ||||||:!!||||||:!!|||!!:! !||||||..!|||! !:!!!!:|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 376 : rAlaGlyLysIleIleAsnMetSerValValThrPheGlyAsnIleIleLysThrIle : 394 ||||||||||:!!:!!:!!||||||:!! !|||||||||:!!:!!! !:!!|||! ! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrLys 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAA : 244827 395 : Leu : 395 ||| Leu 244828 : CTT : 244832 vulgar: AmOr43 336 395 . KQ414889.1 244655 244832 + 154 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244832 154 + . gene_id 19 ; sequence AmOr43 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244832 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244832 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244832 154 + . alignment_id 19 ; Query AmOr43 ; Align 244656 337 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 335 -> 390 Target range: 283273 -> 283438 336 : GluLysCysLysLysIleSerAsnMetIleTyrMetThrAsnTrpTyrArgLeuSerG : 355 ..!:!!|||||||||:!!.!!.!.:!!:!!||||||||||||! !!:! !||| !!! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 356 : luLysAspIleLeuAsnLeuIleMetIleMetIleArgSerGlyMetGluTyrLysMe : 374 !:||||||||||||||||||:!!:!:|||!!: !||||||.!!::: |||:: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 375 : tThrAlaGlyLysIleIleAsnMetSerValValThrPheGlyAsnIle : 390 :||||||...|||:::|||...||||||!.! !||||||! !:!!:!! eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspVal 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTA : 283438 vulgar: AmOr43 335 390 . KQ414889.1 283273 283438 + 144 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283438 144 + . gene_id 20 ; sequence AmOr43 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283438 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283438 144 + . alignment_id 20 ; Query AmOr43 ; Align 283274 336 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 300 -> 404 Target range: 206050 -> 207604 301 : GluTrpTyrGlyArgAspValArgValLeuGlyAlaTyrAlaPheSerValThrCysI : 320 |||||| ! ..!!.!:!!..!! !!.!:!! !!.!||| ! ! ! !! !! ! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 321 : leThrLeuAsnThrPheLeuIleCysTyrIleGlyGluValLeuSerGluLys >>> : 338 !|||!!! !..!|||:!!:!!||||||||||||:!!:!!|||! !!!::!! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 339 : > Target Intron 1 >>>> CysLysLysIleSerAsnMetIleTyrMetThrA : 349 81 bp ! ! :!:.!! ! !! !! !..!| ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 350 : snTrpTyrArgLeuSerGluLysAspIleLeuAsnLeuIleMetIleMetIleArgSe : 368 |||||||||||||| !!.!.!:! !! ! !::!:!!|||:!!|||!!: !! !|| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 369 : rGlyMetGluTyrLysMetThrAlaGlyLysIleIleAsnMetSerValValThrPhe : 387 |..! ! |||:!:||||||||||||!!:.!!.!.||||||:!!!.!!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 388 : GlyAsn >>>> Target Intron 2 >>>> IleIleLysThrIleLeuAlaTy : 397 !:!! 1161 bp :!!!!:|||..! :!!!.!|| ThrAsp++ ++ValMetLysValAlaMetGlyTy 206391 : ACCGATgt.........................agGTAATGAAGGTGGCGATGGGATA : 207581 398 : rLeuAsnIleLeuArgGlnMet : 404 |!!!||||||||||||:!!:!: rPheAsnIleLeuArgGluVal 207582 : CTTCAACATACTCCGTGAAGTC : 207604 vulgar: AmOr43 300 404 . KQ414889.1 206050 207604 + 141 M 37 111 5 0 2 I 0 77 3 0 2 M 52 156 5 0 2 I 0 1157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 207604 141 + . gene_id 21 ; sequence AmOr43 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206398 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206398 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206399 206400 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206399 207559 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 207558 207559 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 207560 207604 . + . KQ414889.1 exonerate:protein2genome:local exon 207560 207604 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 207604 141 + . alignment_id 21 ; Query AmOr43 ; Align 206051 301 111 ; Align 206243 338 156 ; Align 207560 390 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 16 -> 227 Target range: 194165 -> 194795 17 : AsnGluTyrSerIleGlnLeuAsnArgTrpPheSerLysThrIleGlyValTrpProL : 36 !.!||||||:!!:!!!:!:!! !:! !.!! !! ! !!||||||:!!|||||| ThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProA 194166 : ACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAA : 194223 37 : euProSerSerThrSerLysLeuGluLysIleMetThrLysIleLeuIlePheLeuCy : 55 ! !..!||| ! !! ! !! ::!:!:.!..!!:!!! ! !:!: rgGluAspSerLeuArgAspArgValArgLeuPheAlaGlnThrGlyVal------Va 194224 : GGGAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTG------GT : 194274 56 : sTrpIleIleAlaLeuPheValIleIleSerSerLeuLeuTyrPheAlaLeuValLys : 74 !!:: !:!: !! !|||:!!:!::!! !! !:!!:!!||| ! !!!!! ! lPheAlaLeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCys 194275 : CTTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGC : 194331 75 : GluAspIleIleSerLysLeuLysThrLeuGlyProIleSerTyrCysPheGlyGlyG : 94 ||||||:!:! !!! ! :!!|||..!:!!!.! !! ! !!:! !!.!. !!.! GluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaI 194332 : GAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGA : 194391 95 : lyLeuAsnTyrAlaValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleAspHi : 113 !:!!!!.!:! !..!:!!:!!:!!!.!!:!!!.!!:||||||!:!|||:!: .! leIleLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGl 194392 : TCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGA : 194448 114 : sIleGluThrAspTrpLysAlaIleThrArgThrGlyAspArgGlnValMetPheLys : 132 .!!:||||||.!.!::!:!! !:!: ! !! !! !||||||||||||||| !!. uMetGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsn 194449 : GATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAAT : 194505 133 : AsnAlaLysIleGlyArgIleIleSerGlyCysValAlaGlyPheLeuGlnLeuSerT : 152 !|||||||||||||||.!!.!!!!! ! ! !|||.!!! ! ! !.!!. CysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyA 194506 : TGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCG : 194565 153 : hrIleSerPheCysThrValPheGlyValPheLysArgArgIleLysIleGlyAsnGl : 171 !!:!: !!!:! !! !:!!.!. !:!!.!...!..!|||||| ! ! !:!!.! laLeuProTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGluAspAs 194566 : CTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAA : 194622 172 : uSerMetGluIleTyrValLeuProPheProThrTyrLys<->IleProValAspThr : 189 .|||! :!!||| !:!!! ! !!!. !!.!||| .!! !!:!!!!: ! nSerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAsp 194623 : CAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGAC : 194679 190 : AsnProGlyHisAsnIleValLeuGlyPheGlnPheLeuAlaAlaTyrIleMetSerA : 209 :::||| !:!!.!.|||..!!!!! !! |||.!.||| !::! !|||!!:! !: SerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuS 194680 : TCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGT : 194739 210 : laThrValValIleAlaPheSerLeuAlaThrValPheAlaCysHisAlaIleGly : 227 !!||| ! ! !!:!||||||!.!.!!..!.!! ! |||..! !||| erThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGly 194740 : CGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGC : 194795 vulgar: AmOr43 16 227 . KQ414889.1 194165 194795 + 135 M 36 108 G 2 0 M 130 390 G 0 3 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194166 194795 135 + . gene_id 22 ; sequence AmOr43 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194166 194795 . + . KQ414889.1 exonerate:protein2genome:local exon 194166 194795 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 194166 194795 135 + . alignment_id 22 ; Query AmOr43 ; Align 194166 17 108 ; Align 194274 55 390 ; Align 194667 185 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 95 -> 266 Target range: 304359 -> 304866 96 : AsnTyrAlaValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleAspHisIleG : 115 .!.|||:!!:!!||| ::: ... ::: !!:! ! !! !!:!!. GlnTyrSerIleLeuProCysLysLeuLysArgLeuValPheArg***GlyAspLeuS 304360 : CAATATTCTATACTTccttgcaaattaaaacgtttaGTGTTTCGATAAGGGGATCTCT : 304417 116 : luThrAspTrpLysAlaIleThrArgThrGlyAspArgGlnValMetPheLysAsnAl : 134 ..|||! !:::!! !:!: ! ! ! !!||||||:!!:!!|||.!.||| !!!. erThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysTyrGl 304418 : CTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGG : 304474 135 : aLysIleGlyArgIleIleSerGlyCysValAlaGlyPheLeuGlnLeuSerThrIle : 153 !:!!!!:||||||! !:!:!!! ! ! !||| !|||:!! ! !.!! !! ! yGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThr 304475 : GCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACC : 304531 154 : SerPheCysThrValPheGly<->ValPheLysArgArgIleLysIleGlyAsnGluS : 172 ! !!:! !||||||.!. ! !.! ! !! ! !:!: ! !|||...! IleTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgT 304532 : ATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTA : 304591 173 : erMetGluIleTyrValLeuProPheProThrTyrLysIleProValAspThrAsnPr : 191 !!!!::!! !|||! !||| ! !!:! ! !.!! !|||.!.|||!:!|| hrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerPr 304592 : CGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCC : 304648 192 : oGlyHisAsnIleValLeuGlyPheGlnPheLeuAlaAlaTyrIleMetSerAlaThr : 210 | !:!!.!.:!:|||! ! ! !!!!.! !:!!..!!.!|||:!!!!:! !:!!! ! oIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIle 304649 : TATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATA : 304705 211 : ValValIleAlaPheSerLeuAlaThrValPheAlaCysHisAlaIleGlyGlnLeuT : 230 ..!!.! !|||! !.!!||||||.!!:!!|||||| |||||| !||||||:!! ThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleA 304706 : ACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTG : 304765 231 : hrIleMetIleThrTrpIleGluGluPheValAsnArgProGlnGluGluAsnLysAs : 249 !|||:!:!!::!! ! :!:! !!:.!!||||||!!! !:!!..!...:!! !:! spIleValMetSerArgLeuGlyAspLeuValAsnSerLysGluSerSerAspLeuAs 304766 : ATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCATCTGATTTAGA : 304822 250 : nMetArgValAsnGluIleSerValIleIleGluHisHisLeuArgIleLeu : 266 !! |||:!!! ||| |||:!!||||||||||||||||||||| pLysArgLeuIleGlu---------IleValGluHisHisLeuArgIleLeu 304823 : TAAACGATTAATAGAA---------ATTGTTGAGCATCATTTGCGAATTTTA : 304866 vulgar: AmOr43 95 266 . KQ414889.1 304359 304866 + 120 M 65 195 G 0 3 M 94 282 G 3 0 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304360 304866 120 + . gene_id 23 ; sequence AmOr43 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304360 304866 . + . KQ414889.1 exonerate:protein2genome:local exon 304360 304866 . + . insertions 3 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 304360 304866 120 + . alignment_id 23 ; Query AmOr43 ; Align 304360 96 195 ; Align 304558 161 282 ; Align 304840 258 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 334 -> 405 Target range: 261916 -> 262201 335 : SerGluLysCysLysLysIleSerAsnMetIleTyrMetThrAsnTrpTyrArgLeuS : 354 ||| !:!!|||..!|||:!!.!!:!!:!::!!|||||||||||||||||| !||| Ser***GlnCysSerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuP 261917 : TCTTGACAGTGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTAC : 261974 355 : erGluLysAspIleLeuAsnLeuIleMetIleMetIleArg-SerGlyMetGluTyrL : 373 !!!!:|||..!||||||:!!||||||:!!|||!!: !|||#!:! !! !||| !! roAspLysSerIleLeuAspLeuIleLeuIleIleAlaArg#AsnArgArgGluIleS 261975 : CTGATAAAAGTATCCTTGATTTGATTTTGATCATTGCACGAAAACCGCCGGGAAATTA : 262032 374 : ysMetThrAlaGlyLysIleIleAsnMet{S} >>>> Target Intron 1 >>> : 383 .. !.!!.!||| ! !:!!... {|} 71 bp erSerAsnValGlyLeuHisValArgArg{S}++ 262033 : GTTCAAATGTCGGTTTACACGTTCGGCGA{T}gt........................ : 262065 384 : > {er}ValValThrPheGlyAsnIleIleLysThrIleLeuAlaTyrLeuAsnIle : 400 {||} ! ! !.!. !.!.:!::!!|||||| !!!!||||||||||||:!: +-{er}SerProLeuIlePheGlnValValLysThrAlaPheAlaTyrLeuAsnLeu 262066 : .ac{CA}AGTCCGTTGATATTCCAGGTGGTTAAAACTGCTTTCGCGTATCTGAATCTG : 262184 401 : LeuArgGlnMetThr : 405 ||||||||||||||| LeuArgGlnMetThr 262185 : TTGCGTCAAATGACG : 262201 vulgar: AmOr43 334 405 . KQ414889.1 261916 262201 + 116 M 33 99 F 0 1 M 15 45 S 0 1 5 0 2 I 0 67 3 0 2 S 1 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261917 262201 116 + . gene_id 24 ; sequence AmOr43 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 261917 262062 . + . KQ414889.1 exonerate:protein2genome:local exon 261917 262062 . + . insertions 0 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local splice5 262063 262064 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 262063 262133 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 262132 262133 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 262134 262201 . + . KQ414889.1 exonerate:protein2genome:local exon 262134 262201 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 261917 262201 116 + . alignment_id 24 ; Query AmOr43 ; Align 261917 335 99 ; Align 262017 368 45 ; Align 262136 384 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 286 -> 342 Target range: 261691 -> 261859 287 : AsnIleLeuSerIleCysMetLeuSerTyrCysIleLeuAlaGluTrpTyrGlyArgA : 306 ||| !:!!! !|||! !.!. ::: :::||| |||||| !! !!:!| AsnCysValIleIlePhePhe***TyrPhePheLeuLeuGlnGluTrpAlaGluGlnA 261692 : AATTGTGTAATAATCTTTTTctgatatttctttcttttgcagGAATGGGCTGAGCAAG : 261749 307 : spValArgValLeuGlyAlaTyrAlaPheSerValThrCysIleThrLeuAsnThrPh : 325 ||:!!!:! !|||..!.!!||| !.!.! !:!!! !...||| !!!!|||..!|| spIleGlnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPh 261750 : ATATACAAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATT : 261806 326 : eLeuIleCysTyrIleGlyGluValLeuSerGluLysCysLysLysIleSer : 342 |:!!||||||||||||||||||:!!|||!!!|||:!! :!! ! :!:::: eIleIleCysTyrIleGlyGluIleLeuThrGluGlnValGlnHisLeuAla 261807 : TATAATCTGTTACATCGGTGAAATACTAACGGAACAGGTACAACATTTGGca : 261859 vulgar: AmOr43 286 342 . KQ414889.1 261691 261859 + 102 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261692 261859 102 + . gene_id 25 ; sequence AmOr43 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 261692 261859 . + . KQ414889.1 exonerate:protein2genome:local exon 261692 261859 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 261692 261859 102 + . alignment_id 25 ; Query AmOr43 ; Align 261692 287 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 840 Query range: 9 -> 402 Target range: 262825 -> 265004 10 : LysLysPheGlySerLeuAsnGluTyrSerIleGlnValAsnArgTrpLeuSerLysT : 29 :!!!..||||||||||||!:!!!:||||||:!:|||:!!|||||||||||| !||| GluSerPheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysP 262826 : GAAAGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAAC : 262883 30 : hrIleGlyValTrpProPheThrSerThrThrSerLysPheGluLysIleMetThrLy : 48 !!||||||!.!||||||.!.:!!:!!:!!! !|||!:!.!.|||::!|||!!: ! roIleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPh 262884 : CGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTT : 262940 49 : sIleLeuIleIleValCysSerIleIleAlaLeuPheValThrValProSerMetLeu : 67 :!!||||||:!!||||||! ! !:!! !|||! !..!..!:!!||||||!!:||| eLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeu 262941 : TCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTT : 262997 68 : HisPheIleLeuValLysGluAspIleIleThrLysLeuLysMetThrGlyProIleI : 87 |||.!!:!!|||! ! |||:!!.!! !! !||||||:!!:!: !||||||:!! HisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuG 262998 : CATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCG : 263057 88 : leTyrCysIleGlyGlyGlyLeuAsnTyrAlaIleLeuLeuPheLeuArgAspAspIl : 106 ! ! !! .!!! !||| !:!!||||||.!! ||||||.!!! !!!! ! ||||| lyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIl 263058 : GTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATAT : 263114 107 : eArgTyrCysIleGluHisIleGluAlaAspTrpLysThrIleThrArgThrGlyAsp : 125 |!:! !|||:!::!!|||:!::!!! !|||||| ! !:!:|||||| !! !||| eGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAsp 263115 : ACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGAT : 263171 126 : ArgGlnValMetPheLysAsnAlaLysIleGlyArgIleIleSerGlyCysIleGlyS : 145 !:!!:::!!|||.!.|||||||||||| !|||||| !:!::!!!.!! ! !!.!! GlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaI 263172 : CAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGA : 263231 146 : erPheLeuGlnPheSerThrIleSerTyrCysThrValPheGlyValPheLysGlnTh : 164 !|||:!!||| |||! !!!:!!! ! ||| !||| !.! !! !! !|||.. lePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnVa 263232 : TCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGT : 263288 165 : rIleLysIleGlyAsnGluSerMetGluIleHisValLeuProPheProThrTyrLys : 183 !|||:!! !|||||||||!!!! :!!!.!:!!||||||! !|||..!|||||| lIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLys 263289 : GATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAA : 263345 184 : <-><->IleProValAspThrAsnLeuGluHisGlyIleValLeuGlyPheGlnTyrL : 201 ||||||||||||||||||! ! !:!!! !||| !!|||!.! |||!:!| GluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheL 263346 : GAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTC : 263405 202 : euThrAlaCysIleMetThrAlaThrIleIleIleAlaPheSerLeuAlaThrValPh : 220 ||:!!!.!! !|||:!:|||||||||! !:!! !||||||.!!:!!.!!.!!||||| euSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPh 263406 : TGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTT : 263462 221 : eAlaCysHisAlaValGlyGlnLeuThrIleMetValThrTrpIleGluGluPheVal : 239 |||| !!|||||| !|||||||||!.!:!::!!:!!:!!|||||| !||||||||| eAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheVal 263463 : CGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTG : 263519 240 : AsnArgProGlnGluGluLysLysAsnMetArgIleAsnGluIleSerValIleIleG : 259 |||!:! !!::!!!:|||!!.||||||:!: !.!!!.!||||||.!!||||||:!!| AsnGlnSerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValG 263520 : AACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTG : 263579 260 : luHisHisLeuArgIleLeu{Se} >>>> Target Intron 1 >>>> {r}Ph : 267 ||||||||||||||:!!|||{||} 831 bp {|}|| luHisHisLeuArgValLeu{Se}++ +-{r}Ph 263580 : AACATCATCTGAGAGTTCTG{AG}gt.........................aa{C}TT : 264434 268 : eLeuGluArgThrGluHisLeuLeuAsnProIleTyr-----PheMetGluMetPheL : 285 ||||...! !.!!:!! !:!!:!!!.. |||:::#####.....! :!!! !! eLeuSerIleAlaGlnIleValIleLysThrIlePhe#####LeuGlnCysLeuSerA 264435 : TTTATCTATTGCACAAATTGTGATAAagacaatttttgtttacttcAGTGTTTGTCCA : 264493 286 : ysAsnIleLeuThrThrCysMetLeuSerTyrCysIleLeuValGluTrpSerGlyHi : 304 :!:!!|||:!! !..!!! ! :!!!!! ! !:!!!!! !||||||..!.!!|| rgAspIleIlePheVal***AsnIleThrIleAspValPheGlnGluTrpGluSerHi 264494 : GGGATATAATATTTGTATGAAATATAACAATTGACGTTTTTCAGGAATGGGAAAGTCA : 264550 305 : sAspIleLysValLeuSerAlaTyrSerPheThrIleThrAsnIleIleLeuSerLeu : 323 |||||||::: |||::!.!!|||! !.!.! !:!:! !:::!!: ! !!:!:!! sAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerMetCysGlyAsnIle 264551 : tgatattcaaaatttgacTACATATTTCATGATACTGATATCAATGTGCGGCAACATT : 264607 324 : PheLeuIleCysTyrIleSerGluValLeuAsnGluLys >>>> Target Intro : 337 ||||||!!:|||||||||.!!|||:!!|||!.!|||::: 78 bp PheLeuMetCysTyrIleGlyGluIleLeuThrGluGln++ 264608 : TTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcaggt................. : 264651 338 : n 2 >>>> CysLysGluIleGlyAsnIleValTyrMetThrAsnTrpTyrArgLeu : 352 ||||||:!!:!!|||.!.:!:|||||||||:!!||||||||| !||| ++CysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeu 264652 : ........agTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTA : 264772 353 : SerAspLysAspIleLeuAsnLeuIleMetIleIleIleArgSerSerValGluTyrL : 372 !! !!||||||||||||:!!||||||:!:||||||:!!||||||||||||! !!:!| ProTyrLysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheL 264773 : CCCTACAAAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTA : 264832 373 : ysMetThrAlaGlyLysIleIleAspMetSerValIleThrPheSerAsn >>>> T : 389 ||.!.|||||||||||||||:!! !!||||||:!! !|||||||||:!! ysPheThrAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264833 : AATTCACCGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt...... : 264885 390 : arget Intron 3 >>>> IleIleLysThrIlePheAlaTyrLeuAsnIleLeuA : 401 80 bp :!!||||||:!! !|||.!!|||||||||:!!|||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuA 264886 : ...................aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTC : 264999 402 : rgGln : 402 ||||| rgGln 265000 : GCCAA : 265004 vulgar: AmOr41 9 402 . KQ414889.1 262825 265004 + 840 M 174 522 G 0 6 M 82 246 S 0 2 5 0 2 I 0 827 3 0 2 S 1 1 M 13 39 F 0 5 M 57 171 5 0 2 I 0 74 3 0 2 M 52 156 5 0 2 I 0 76 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262826 265004 840 + . gene_id 1 ; sequence AmOr41 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262826 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262826 263601 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 264432 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264431 264432 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 264433 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264433 264648 . + . insertions 0 ; deletions 0 ; frameshifts 5 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264726 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265004 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265004 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262826 265004 840 + . alignment_id 1 ; Query AmOr41 ; Align 262826 10 522 ; Align 263354 184 246 ; Align 264434 267 39 ; Align 264478 280 171 ; Align 264727 337 156 ; Align 264963 389 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 694 Query range: 5 -> 298 Target range: 274347 -> 275306 6 : ValAlaIleGlnLysLysPheGlySerLeuAsnGluTyrSerIleGlnValAsnArgT : 25 :!! !:!! !!!.|||! !||||||!:!!!:||||||:!:|||:!!||||||| IleAsnValThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgT 274348 : ATAAACGTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGAT : 274405 26 : rpLeuSerLysThrIleGlyValTrpProPheThrSerThrThrSerLysPheGluLy : 44 ||!!!! !||| !!||||||!.!||||||!!..!!||| !!|||!!!|||||||||:: rpPheLeuLysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGluAr 274406 : GGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACG : 274462 45 : sIleMetThrLysIleLeuIleIleValCysSerIleIleAlaLeuPheValThrVal : 63 !|||:!::!! ! :::||||||...:::||| ! !.!! !|||! !..!..!:!! gIleLeuSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIle 274463 : AATCCTTTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATC : 274519 64 : ProSerMetLeuHisPheIleLeuValLysGluAspIleIleThrLysLeuLysMetT : 83 ||||||!!:!!!|||.!!||||||||| ! |||..!:!! ! !|||||||||:!! ProSerIlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuL 274520 : CCAAGCATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGC : 274579 84 : hrGlyProIleIleTyrCysIleGlyGlyGlyLeuAsnTyrAlaIleLeuLeuPheLe : 102 !||||||:!! !:!!!! .!! !||||||:!!||||||.!!! ||||||.!.! euGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuAr 274580 : TCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACG : 274636 103 : uArgAspAspIleArgTyrCysIleGluHisIleGluAlaAspTrpLysThrIleThr : 121 !!!! ! !!:|||||| !|||:!:||||||!!::!!.!!||||||!:!! !:!:||| gSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThr 274637 : CAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACC : 274693 122 : ArgThrGlyAspArgGlnValMetPheLysAsnAlaLysIleGlyArgIleIleSerG : 141 ||| !!! !|||!:!|||||||||!!.||||||||||||||||||||| !:!!:!! ArgProGluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaI 274694 : AGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGA : 274753 142 : lyCysIleGlySerPheLeuGlnPheSerThrIleSerTyrCysThrValPheGlyVa : 160 !! ! !!.!:!!|||:!!|||! !.!!..!:!!!!!||||||..!:!! !.! ! lePheCysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPh 274754 : TCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTT : 274810 161 : lPheLysGlnThrIleLysIleGlyAsnGluSerMetGluIleHisValLeuProPhe : 179 ! !! !||||||:!!:!!:!!|||||||||!!!! :!:|||:!!||||||! ! eThrMetGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCys 274811 : CACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGT : 274867 180 : ProThrTyrLys<-><->IleProValAspThrAsnLeuGluHisGlyIleValLeuG : 197 !.!!|||||| :!! !!|||||||||!:!! ! !:!!! !|||||||||! LysAlaTyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValLeuA 274868 : AAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTG : 274927 198 : lyPheGlnTyrLeuThrAlaCysIleMetThrAlaThrIleIleIleAlaPheSerLe : 216 .!! |||!:!:!!:!!!.!! !|||:!!!.!:!!!:! :!! !||||||||||| laSerGlnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLe 274928 : CCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCT : 274984 217 : uAlaThrValPheAlaCysHisAlaValGlyGlnLeuThrIleMetValThrTrpIle : 235 ||||.!!|||||||||...|||||| !|||||||||!:!:!::!!:!!! !|||||| uAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIle 274985 : TGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATC : 275041 236 : GluGluPheValAsnArgProGlnGluGluLysLysAsnMetArgIleAsnGluIleS : 255 ||||||||||||!.! !!::!!!::::...||||||::: ...::!||||||. ThrGluPheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleG 275042 : ACCGAGTTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCG : 275101 256 : erValIleIleGluHisHisLeuArgIleLeu{Se} >>>> Target Intron 1 : 266 !!|||:!!:!!|||||||||||||||:!!|||{||} 74 bp lyValValValGluHisHisLeuArgValLeu{Se}++ 275102 : GCGTGGTTGTCGAACATCATCTGAGGGTACTC{AG}gt.................... : 275138 267 : >>>> {r}PheLeuGluArgThrGluHisLeuLeuAsnProIleTyrPheMetGlu : 282 {|}|||:!!! !|||! !||| !!:!!:!!|||! !|||! !||||||||| ++{r}PheIleAlaArgIleGluAspValMetAsnArgIleCysPheMetGlu 275139 : .....ag{T}TTCATAGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAA : 275256 283 : MetPheLysAsnIleLeuThrThrCysMetLeuSerTyrCysIleLeu : 298 :!!|||||| !! !||| !! !|||||||||.!!|||! !|||||| LeuPheLysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleLeu 275257 : TTGTTCAAGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTCTC : 275306 vulgar: AmOr41 5 298 . KQ414889.1 274347 275306 + 694 M 178 534 G 0 6 M 82 246 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274348 275306 694 + . gene_id 2 ; sequence AmOr41 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274348 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274348 275135 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274348 275306 694 + . alignment_id 2 ; Query AmOr41 ; Align 274348 6 534 ; Align 274888 184 246 ; Align 275211 267 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 691 Query range: 0 -> 298 Target range: 266586 -> 267555 1 : MetAlaAspAspIleValAlaIleGlnLysLysPheGlySerLeuAsnGluTyrSerI : 20 ||||||:!!!!: :!!!.!|||:!! !!!..!...!||||||!:!!!:||||||: MetAlaAsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerL 266587 : ATGGCTAACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCC : 266644 21 : leGlnValAsnArgTrpLeuSerLysThrIleGlyValTrpProPheThrSerThrTh : 39 !:|||:!!|||||||||!!! !||| !!||||||!.!|||||| !||| !|| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuTh 266645 : TGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCAC : 266701 40 : rSerLysPheGluLysIleMetThrLysIleLeuIleIleValCysSerIleIleAla : 58 |||||||.!!|||::!|||:!::!! ! !||||||:!!:!!|||! ! ! ! ! rSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIle 266702 : ATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATA : 266758 59 : LeuPheValThrValProSerMetLeuHisPheIleLeuValLysGluAspIleIleT : 78 ||||||..!..!:!!|||!!!:!!!!!|||.!!:!!|||! ! ! |||..!||| !| LeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgT 266759 : CTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTA : 266818 79 : hrLysLeuLysMetThrGlyProIleIleTyrCysIleGlyGlyGlyLeuAsnTyrAl : 97 |||||:!!|||:!! !||||||:!:! !:!!!! .!!! !||||||:!!||||||.! hrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrTh 266819 : CGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACAC : 266875 98 : aIleLeuLeuPheLeuArgAspAspIleArgTyrCysIleGluHisIleGluAlaAsp : 116 !! !||||||.!.! !!!! ! !!:|||||| !|||:!!||||||!!::!!.!!||| rThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAsp 266876 : CACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGAT : 266932 117 : TrpLysThrIleThrArgThrGlyAspArgGlnValMetPheLysAsnAlaLysIleG : 136 |||!:!! !:!:|||||| !!! !|||!:!|||||||||!!.|||||||||!:!|||| TrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleG 266933 : TGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCG : 266992 137 : lyArgIleIleSerGlyCysIleGlySerPheLeuGlnPheSerThrIleSerTyrCy : 155 ||||| !|||:!! !! ! !!.!:!!|||:!!|||! !.!!..!:!!.!!||||| lyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCy 266993 : GTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTG : 267049 156 : sThrValPheGlyValPheLysGlnThrIleLysIleGlyAsnGluSerMetGluIle : 174 |..!:!! !.! !! !! !||||||:!::!!:!!|||||||||!!!! ! :!! sValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleVal 267050 : TGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTA : 267106 175 : HisValLeuProPheProThrTyrLys<-><->IleProValAspThrAsnLeuGluH : 192 |||:!!||||||! ! !!..!|||||| ||| !!|||||||||!:!! ! !: HisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrA 267107 : CATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGA : 267166 193 : isGlyIleValLeuGlyPheGlnTyrLeuThrAlaCysIleMetThrAlaThrIleIl : 211 !!! !|||||||||! !! |||!:!:!!:!!!.!! !|||:!!!.!:!!!:!:!!:! snGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValVa 267167 : ACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGT : 267223 212 : eIleAlaPheSerLeuAlaThrValPheAlaCysHisAlaValGlyGlnLeuThrIle : 230 ! !|||||||||||||||.!!|||||||||..!|||||| !|||||||||!:!:!: lGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerVal 267224 : CGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTG : 267280 231 : MetValThrTrpIleGluGluPheValAsnArgProGlnGluGluLysLysAsnMetA : 250 :!!:!!! !||||||:!!||||||||||||||| !!::!!!:...!!.||||||:!: LeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValC 267281 : CTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTT : 267340 251 : rgIleAsnGluIleSerValIleIleGluHisHisLeuArgIleLeu{Se} >>>> : 266 !!.!!:!!:!!|||.!!|||:!!:!!|||||||||||||||:!!|||{||} ysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 267341 : GCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG}gt..... : 267392 267 : Target Intron 1 >>>> {r}PheLeuGluArgThrGluHisLeuLeuAsnPro : 277 69 bp {|}|||:!!! !|||! !||| !:!!:!!!:! ! ++{r}PheIleAlaArgIleGluSerValMetSerGlu 267393 : ....................ag{C}TTCATAGCACGTATCGAAAGTGTAATGAGCGAA : 267490 278 : IleTyrPheMetGluMetPheLysAsnIleLeuThrThrCysMetLeuSerTyrCysI : 297 |||! !|||||||||:!!|||||| !! !:!! !! !|||:!!|||||||||! !| IleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSerTyrTyrI 267491 : ATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCTATTATA : 267550 298 : leLeu : 298 ||||| leLeu 267551 : TCCTT : 267555 vulgar: AmOr41 0 298 . KQ414889.1 266586 267555 + 691 M 183 549 G 0 6 M 82 246 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266587 267555 691 + . gene_id 3 ; sequence AmOr41 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266587 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266587 267389 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267555 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266587 267555 691 + . alignment_id 3 ; Query AmOr41 ; Align 266587 1 549 ; Align 267142 184 246 ; Align 267460 267 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 546 Query range: 2 -> 395 Target range: 236807 -> 238805 3 : AspAspIleValAlaIleGlnLysLysPheGlySerLeuAsnGluTyrSerIleGlnV : 22 ||| ! ! !|||!.!! !:!!! !!..!. !:!! !!:!!!:||||||:!!||| AspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnT 236808 : GACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGT : 236865 23 : alAsnArgTrpLeuSerLysThrIleGlyValTrpProPheThrSerThrThrSerLy : 41 !||||||||| !! !|||!:!||||||..!|||||| ..! !:!!|||!! rpAsnArgTrpAlaMetLysSerIleGlyThrTrpPro------GlnPheSerSerAs 236866 : GGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCA------CAGTTCTCGTCGAA : 236916 42 : sPheGluLysIleMetThrLysIleLeuIleIleValCysSerIleIleAlaLeuPhe : 60 ..!!|||!:!! !!!::!!::!||||||! !:!::!!|||! !! ! ! !|||||| nLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPhe 236917 : CCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTC : 236973 61 : ValThrValProSerMetLeuHisPheIleLeuValLysGluAspIleIleThrLysL : 80 !! !:!!|||!!! !||||||.!.!!:|||! !|||! ! !.!! !||||||: SerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysV 236974 : TCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAG : 237033 81 : euLysMetThrGlyProIleIleTyrCysIleGlyGlyGlyLeuAsnTyrAlaIleLe : 99 !!|||!!: !||| !!:!:! !:!!!! :!: ! !! !:!!!:!|||.!!!!:|| alLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLe 237034 : TGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCT : 237090 100 : uLeuPheLeuArgAspAspIleArgTyrCysIleGluHisIleGluAlaAspTrpLys : 118 ||||.!.! !||| ! !||||||:!!! !.!!.!.|||!!:|||.!!||||||!:! uLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArg 237091 : GTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGA : 237147 119 : ThrIleThrArgThrGlyAspArgGlnValMetPheLysAsnAlaLysIleGlyArgI : 138 |||! |||||| ::::::||||||!!.||| !!||||||.!!.!!||| ThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgT 237148 : ACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGAT : 237207 139 : leIleSerGlyCysIleGlySerPheLeuGlnPheSerThrIleSerTyrCysThrVa : 157 ! :!! !! ! ! !! !|||:!!!!. !.!!! !:!!.!!||||||..!:! yrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMe 237208 : ACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTAT : 237264 158 : lPheGlyValPheLysGlnThrIleLysIleGlyAsnGluSerMetGluIleHisVal : 176 ! !.! ! !! !..!..!:!! !:!!||||||:!!!!!! ! :!:!.!||| tThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLeuArgVal 237265 : GACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGCGTG : 237321 177 : LeuProPheProThrTyrLys<-><->IleProValAspThrAsnLeuGluHisGlyI : 194 ||||||!!.|||! !|||||| :!!||||||||||||||| ! !:!!! !| LeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnAspI 237322 : CTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGACA : 237381 195 : leValLeuGlyPheGlnTyrLeuThrAlaCysIleMetThrAlaThrIleIleIleAl : 213 |||||:!! !! |||!:!|||:!!!.!! !||| !!.! !!:! |||! !!. leValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSerVa 237382 : TCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAGTGT : 237438 214 : aPheSerLeuAlaThrValPheAlaCysHisAlaValGlyGlnLeuThrIleMetVal : 232 !.!.||||||.!!!:!!.!.!..!!! |||||| !|||||||||!:!:!::!::!! lIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValValMet 237439 : TATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTTATG : 237495 233 : ThrTrpIleGluGluPheValAsnArgProGlnGluGluLysLysAsnMetArgIleA : 252 !! !||||||!!:||||||!:!..! !!::!.....! !|||:!! !.!.!!: LeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAspHisPheA 237496 : TTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATCATTTCG : 237555 253 : snGluIleSerValIleIleGluHisHisLeuArgIleLeu{Se} >>>> Target : 266 !!|||||| !!..!|||:!:|||.!.|||||||||:!:|||{!:} 7 spGluIleProThrIleValGluGluHisLeuArgValLeu{As}++ 237556 : ACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTG{AA}gt........... : 237601 267 : Intron 1 >>>> {r}PheLeuGluArgThrGluHisLeuLeuAsnProIleTyr : 279 08 bp {!}.!.:!!! ! !!|||..! :!!! !||| !!:!! ! --{n}IleIleAla***ThrSerThrValGlnAsnSerLeuArg 237602 : ..............ga{T}ATAATTGCGTGAACATCAACAGTACAAAATTCCTTACGT : 238344 280 : PheMetGluMetPheLysAsnIleLeuThrThrCysMetLeuSerTyrCysIleLeuV : 299 ! ...||| |||...||| |||:::|||| ThrThrSerMetThrLysLysIleGluTyrPhePheGlyThrTyrLysCysValLeuV 238345 : ACAACATCgatgacaaaaaaaattgaatatttcttcggaacgtataaatgtgtgcttg : 238404 300 : alGluTrpSerGlyHis-----AspIleLysValLeuSerAlaTyrSerPheThrIle : 316 ||... !!!:!|||!!.#####||| !|||:!!|||! !.!!|||! ! ! .!!:!! alSerArgAsnGlyGln#####AspAlaLysIleLeuIleThrTyrPheValAlaLeu 238405 : tttctaGGAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTGTAGCACTC : 238460 317 : ThrAsnIleIleLeuSerLeuPheLeuIleCysTyrIleSerGluValLeuAsnGluL : 336 ..! !|||:!!! !!:! !|||:!!:!!||||||||||||||| !|||!..|||: ValAlaIleValSerAsnThrPheIleLeuCysTyrIleSerGluArgLeuThrGluG 238461 : GTTGCTATTGTTTCTAATACATTTATACTCTGTTATATCAGCGAAAGGCTGACAGAAC : 238520 337 : ys >>>> Target Intron 2 >>>> CysLysGluIleGlyAsnIleValTyr : 345 !! 106 bp ||| !:!!:!!|||.!.:!:|||||| ln++ ++CysLeuLysValGlyGluValValTyr 238521 : AGgt.........................agTGCTTGAAAGTTGGTGAAGTGGTTTAC : 238653 346 : MetThrAsnTrpTyrArgLeuSerAspLysAspIleLeuAsnLeuIleMetIleIleI : 365 ||||||:!!|||||| !||| !!.!.!:! ||||||:!!||||||:!!||||||! MetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleL 238654 : ATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTA : 238713 366 : leArgSerSerValGluTyrLysMetThrAlaGlyLysIleIleAspMetSerValIl : 384 !||||||!:!|||! !|||:!:||||||||||||:!!:!! !!||||||:!! ysArgSerAsnValValValLysValThrAlaGlyLysValLeuHisMetSerLeuTy 238714 : AACGATCGAACGTGGTCGTTAAAGTCACCGCTGGAAAAGTATTACATATGTCGCTTTA : 238770 385 : eThrPheSerAsnIleIleLysThrIlePheAla : 395 !||||||.!!:!!:!!! !:!!|||! !.!!||| rThrPheGlyAspValSerGluThrAsnLeuAla 238771 : CACGTTCGGCGATGTAAGTGAAACTAATCTTGCT : 238805 vulgar: AmOr41 2 395 . KQ414889.1 236807 238805 + 546 M 32 96 G 2 0 M 147 441 G 0 6 M 82 246 S 0 2 5 0 2 I 0 704 3 0 2 S 1 1 M 38 114 F 0 5 M 32 96 5 0 2 I 0 102 3 0 2 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236808 238805 546 + . gene_id 4 ; sequence AmOr41 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 236808 237598 . + . KQ414889.1 exonerate:protein2genome:local exon 236808 237598 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 237599 237600 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 237599 238306 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 238305 238306 . + . intron_id 0 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local cds 238307 238522 . + . KQ414889.1 exonerate:protein2genome:local exon 238307 238522 . + . insertions 0 ; deletions 0 ; frameshifts 5 KQ414889.1 exonerate:protein2genome:local splice5 238523 238524 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238523 238628 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 238627 238628 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238629 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238629 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 236808 238805 546 + . alignment_id 4 ; Query AmOr41 ; Align 236808 3 96 ; Align 236904 37 441 ; Align 237351 184 246 ; Align 238308 267 114 ; Align 238427 305 96 ; Align 238629 337 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 522 Query range: 0 -> 266 Target range: 259721 -> 260525 1 : MetAlaAspAspIleValAlaIleGlnLysLysPheGlySerLeuAsnGluTyrSerI : 20 |||.!!:!! ! ||| !:!!:!!! !!..||| !|||! !!:!!!:||||||: MetThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerL 259722 : ATGACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCC : 259779 21 : leGlnValAsnArgTrpLeuSerLysThrIleGlyValTrpProPheThrSerThrTh : 39 !!||| !!|||||||||!!! !||| !!||||||!.!|||||| !:!!|||:!!|| euGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 259780 : TCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCAC : 259836 40 : rSerLysPheGluLysIleMetThrLysIleLeuIleIleValCysSerIleIleAla : 58 |!!!!:!.!!|||||||||!!::!! |||||||||.!!:!!|||! !! !! ! ! rThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIle 259837 : GACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATA : 259893 59 : LeuPheValThrValProSerMetLeuHisPheIleLeuValLysGluAspIleIleT : 78 ||| !!..! !:!!|||!!!:!:||||||.!.:!!|||! !||||||..!:!: !! LeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrM 259894 : CTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACA : 259953 79 : hrLysLeuLysMetThrGlyProIleIleTyrCysIleGlyGlyGlyLeuAsnTyrAl : 97 !||| !|||:!! !||||||:!!! !:!!!! .!!! !||| !!:!!||||||.! etLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrTh 259954 : TGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACAC : 260010 98 : aIleLeuLeuPheLeuArgAspAspIleArgTyrCysIleGluHisIleGluAlaAsp : 116 !! ||||||!!. ! !! ||||||! ! !|||:!:||||||:!:||| !||| rThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAsp 260011 : AACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGAT : 260067 117 : TrpLysThrIleThrArgThrGlyAspArgGlnValMetPheLysAsnAlaLysIleG : 136 |||!:!! !||||||||| ! !|||!:!.!.||||||!!.!:! !!||||||.!!| TrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheG 260068 : TGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCG : 260127 137 : lyArgIleIleSerGlyCysIleGlySerPheLeuGlnPheSerThrIleSerTyrCy : 155 ||||| !:!!:!!!.!! ! !!.!:!!|||:!!||| !.!!..!:!:!!!!:!|| lyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCy 260128 : GCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTG : 260184 156 : sThrValPheGlyValPheLysGlnThrIleLysIleGlyAsnGluSerMetGluIle : 174 | !||| ! !:!! !! !:!!..!|||:!!:!:|||||||||!!!! ! :!! sLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal 260185 : TTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTT : 260241 175 : HisValLeuProPheProThrTyrLys<-><->IleProValAspThrAsnLeuGluH : 192 |||:!!||||||! ! !!..!|||||| ||| !|||:!! !!:!! ! !: HisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetA 260242 : CATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGA : 260301 193 : isGlyIleValLeuGlyPheGlnTyrLeuThrAlaCysIleMetThrAlaThrIleIl : 211 !!! !|||||||||! ! ! |||!:!:!!:!!!.!! !|||:!!!.!:!!!:!! !:! snGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrVa 260302 : ACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGT : 260358 212 : eIleAlaPheSerLeuAlaThrValPheAlaCysHisAlaValGlyGlnLeuThrIle : 230 ! ! !||||||||||||.!!|||.!..!!..!|||||| !|||||||||!.!:!: lGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnVal 260359 : TGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTG : 260415 231 : MetValThrTrpIleGluGluPheValAsnArgProGlnGluGluLysLysAsnMetA : 250 :!::!! !|||||| !|||||||||:!!..! !!::!.!...!||||||!!. ! LeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaP 260416 : CTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTC : 260475 251 : rgIleAsnGluIleSerValIleIleGluHisHisLeuArgIleLeuSer : 266 !.!!!!.||||||.!!||||||:!!||||||||||||||| !|||!!! roPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeuThr 260476 : CTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTCACG : 260525 vulgar: AmOr41 0 266 . KQ414889.1 259721 260525 + 522 M 183 549 G 0 6 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259722 260525 522 + . gene_id 5 ; sequence AmOr41 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259722 260525 . + . KQ414889.1 exonerate:protein2genome:local exon 259722 260525 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259722 260525 522 + . alignment_id 5 ; Query AmOr41 ; Align 259722 1 549 ; Align 260277 184 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 508 Query range: 0 -> 265 Target range: 256601 -> 257402 1 : MetAlaAspAspIleValAlaIleGlnLysLysPheGlySerLeuAsnGluTyrSerI : 20 |||.!!:!!!!:.!!!.!!.!:!!:!!! !!!.||| !|||! !!:!!!:||||||: MetThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerL 256602 : ATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTC : 256659 21 : leGlnValAsnArgTrpLeuSerLysThrIleGlyValTrpProPheThrSerThrTh : 39 !!|||:!!|||||||||!!! !||| !!||||||!.!|||||| !:!!|||:!!|| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 256660 : TCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCAC : 256716 40 : rSerLysPheGluLysIleMetThrLysIleLeuIleIleValCysSerIleIleAla : 58 |!!!! .!!|||::!! !:!::!!! :!!|||! !|||||||||! ! ! ! ! rThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIle 256717 : TACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATA : 256773 59 : LeuPheValThrValProSerMetLeuHisPheIleLeuValLysGluAspIleIleT : 78 ||||||..! !:!!|||!!!:!!|||||| ! .!!|||! ! ! !!:..!.!! LeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrM 256774 : TTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAca : 256833 79 : hrLysLeuLysMetThrGlyProIleIleTyrCysIleGlyGlyGlyLeuAsnTyrAl : 97 |||:::||| ||||||!!:! !:!!!! ||| !.!! !! !||||||.! etLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrTh 256834 : tgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACAC : 256890 98 : aIleLeuLeuPheLeuArgAspAspIleArgTyrCysIleGluHisIleGluAlaAsp : 116 !:!:||||||!!.! ! !! ! |||||||||||||||:!!||||||||||||.!!||| rLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAsp 256891 : GTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGAT : 256947 117 : TrpLysThrIleThrArgThrGlyAspArgGlnValMetPheLysAsnAlaLysIleG : 136 |||!:!! !:!:! !||| ! !|||!:!|||||||||.!.|||||||||!:!.!!| TrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheG 256948 : TGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCG : 257007 137 : lyArgIleIleSerGlyCysIleGlySerPheLeuGlnPheSerThrIleSerTyrCy : 155 ||||| !:!::!! !! ! !!.!:!!.!!:!!||| !.!!...... ::: lyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePh 257008 : GTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttctt : 257064 156 : sThrValPheGlyValPheLysGlnThrIleLysIleGlyAsnGluSerMetGluIle : 174 ..! !! !.!:!! !! !:!!! !||| ! :!:|||||||||!!!! ! :!: eValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleVal 257065 : cgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTG : 257121 175 : HisValLeuProPheProThrTyrLys<-><->IleProValAspThrAsnLeuGluH : 192 !..||||||||| !! !!..!|||||| :!: !|||||| !!:!! ! !: ArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrA 257122 : CGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGA : 257181 193 : isGlyIleValLeuGlyPheGlnTyrLeuThrAlaCysIleMetThrAlaThrIleIl : 211 !!! !||||||:!! !.!.||| !! !:!!:!! !||| !|||.!!!:!! !:! snGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrVa 257182 : ACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGT : 257238 212 : eIleAlaPheSerLeuAlaThrValPheAlaCysHisAlaValGlyGlnLeuThrIle : 230 !! ! !||||||||||||.!!||||||||| !|||||| !||||||||||||:!: lSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrVal 257239 : TAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTG : 257295 231 : MetValThrTrpIleGluGluPheValAsnArgProGlnGluGluLysLysAsnMetA : 250 :!::!!:!!|||||| !||||||||||||..! !!::!.!....:::|||...... LeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheP 257296 : CTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttc : 257355 251 : rgIleAsnGluIleSerValIleIleGluHisHisLeuArgIleLeu : 265 ..!!!.:!!|||.!!||||||:!:|||||||||||||||:!:||| roPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu 257356 : ctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG : 257402 vulgar: AmOr41 0 265 . KQ414889.1 256601 257402 + 508 M 183 549 G 0 6 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256602 257402 508 + . gene_id 6 ; sequence AmOr41 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256602 257402 . + . KQ414889.1 exonerate:protein2genome:local exon 256602 257402 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256602 257402 508 + . alignment_id 6 ; Query AmOr41 ; Align 256602 1 549 ; Align 257157 184 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 406 Query range: 17 -> 399 Target range: 284523 -> 287252 18 : TyrSerIleGlnValAsnArgTrpLeuSerLysThrIleGlyValTrpProPheThrS : 37 ||||||:!!|||:!!|||||||||!!! !||| !!|||||||||||||||.!!!:! TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 38 : erThrThrSerLysPheGluLysIleMetThrLysIleLeuIleIleValCysSerIl : 56 ! !..!!!!! !!.|||||||||! :!! !:!!||| :!!:!! !!!!!.! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 57 : eIleAlaLeuPheValThrValProSerMetLeuHisPheIleLeuValLysGlu<-> : 75 !:!: ! !|||:!! !||||||!!! ||| ! :!:|||! !||| eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 76 : AspIleIleThrLysLeuLysMetThrGlyProIleIleTyrCysIleGlyGlyGlyL : 94 |||:!! !||||||:!!||||||! !||||||:!:! !!:!|||!!: !!.!!.!: AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 95 : euAsnTyrAlaIleLeuLeuPheLeuArgAspAspIleArgTyrCysIleGluHisIl : 113 !!!!.||| !||||||:!!! ! ! !!! ! ! ||| !! ! |||:!::!! !!|| leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 114 : eGluAlaAsp{Tr} >>>> Target Intron 1 >>>> {p}LysThrIleThr : 121 |...||||||{||} 1012 bp {|} :!! !!:: eArgAlaAsp{Tr}++ +-{p}LeuSerHisSer 284813 : TCGTGCGGAC{TG}gt.........................ac{G}CTTTCGCATAGt : 285848 122 : ArgThrGlyAspArgGlnValMetPheLysAsnAlaLysIleGlyArgIleIleSerG : 141 ::: :::|||::::::||| ! !:!|||!:!||||||||| !:!::!! GlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaI 285849 : caagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGA : 285908 142 : lyCysIleGlySerPheLeuGlnPheSerThrIleSerTyrCysThrValPheGlyVa : 160 !! ! !!.!.!!|||:!! ! ! !.!! !.!!! !||| !||||||.!. !:! lePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLe 285909 : TCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTT : 285965 161 : lPheLys<->GlnThrIleLysIleGlyAsnGluSerMetGluIleHisValLeuPro : 178 !! !! ! !::||| ! |||! !||||||!!!:!!..! !!!.!.!!!!||| uCysThrValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPhePro 285966 : GTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCG : 286022 179 : PheProThrTyrLysIleProValAspThrAsnLeuGluHisGlyIleValLeuGlyP : 198 .!! ! ! ! :!! ! ! !|||!:!! !..! !! !||||||! ! !. IleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheM 286023 : ATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCA : 286082 199 : heGlnTyrLeuThrAlaCysIleMetThrAlaThrIleIleIleAlaPheSerLeuAl : 217 !.|||! !|||.!!|||! !:!!!!: !:!!..!! !:!! !|||! !|||||||| etGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAl 286083 : TGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGC : 286139 218 : aThrValPheAlaCysHisAlaValGlyGlnLeuThrIleMetValThrTrpIleGlu : 236 |.!!||||||!.! |||!.! !||||||!!!! !|||:!:|||||| !:!:!!: aAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAsp 286140 : TGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGAT : 286196 237 : GluPheValAsnArgProGlnGluGluLys<->LysAsnMetArgIleAsnGluIleS : 255 :!!.!!|||:!! !! !:!!! !..!||| !!:!! !!.! !.!...!:!:. LysLeuValAspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuG 286197 : AAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGG : 286256 256 : erValIleIleGluHisHisLeuArgIleLeu{Se} >>>> Target Intron 2 : 266 !!! !||||||||||||||||||!:!||||||{.!} 491 bp lyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 286257 : GAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt.................... : 286293 267 : >>>> {r}PheLeuGluArgThrGluHisLeuLeuAsnProIleTyrPheMetGlu : 282 {!}.!.||| !|||!!: ! ! !:!! !:!:! !!:! .!. -+{y}IleLeu---PheThrAspGlyAsnArgAspAspLeuCysTyrTyrHis 286294 : .....gg{G}ATATTA---TTTACTGACGGTAACAGAGACGACTTGTGTTATTACCAT : 286825 283 : MetPheLysAsnIleLeuThrThrCysMetLeuSerTyrCysIleLeuValGluTrpS : 302 ! ! ! ! |||:!!.!! ! !|||! !|||! ! :!!!!! !||||||. ThrValMetAlaIleIleAlaPheValMetTyrSerLeuSerValPhe***GluTrpG 286826 : ACTGTAATGGCAATAATTGCATTCGTCATGTACTCGTTGTCAGTTTTCTAGGAATGGG : 286885 303 : erGlyHisAspIleLysValLeuSerAlaTyrSerPheThrIleThrAsnIleIleLe : 321 .! ! !!!:! !! !! ! !! !.!!|||!!! !:!:..!::!.!!! !! luGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerPheThrPh 286886 : AGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCACGTT : 286942 322 : uSerLeuPheLeuIleCysTyrIleSerGluValLeuAsnGluLys >>>> Targe : 337 !!:!:!!|||:!!:!!|||||||||.!!|||:!!|||::!|||::: eAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286943 : CAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt.......... : 286992 338 : t Intron 3 >>>> CysLysGluIleGlyAsnIleValTyrMetThrAsnTrpTy : 350 74 bp ||| !:!!:!!||| !..!||||||! !:!!||||| ++CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTy 286993 : ...............agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTA : 287103 351 : rArgLeuSerAspLysAspIleLeuAsnLeuIleMetIleIleIleArgSerSerVal : 369 ||||||| !!! ||| !! !..!||||||:!!|||.!! ! !|||!:! ! rArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSer 287104 : TCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCT : 287160 370 : GluTyrLysMetThrAlaGlyLysIleIleAspMetSerValIleThrPheSerAsnI : 389 ... |||:!:|||||||||||||||||||||:!:|||:!!! !!:!|||!!!!:!: SerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSerV 287161 : TCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCG : 287220 390 : leIleLysThrIlePheAlaTyrLeuAsnIle : 399 !:! !! ! !! !!!.:!!|||! !:!!:!: alSerIleIleAsnLeuSerTyrTyrHisLeu 287221 : TGAGTATCATAAATTTATCCTATTATCATTTG : 287252 vulgar: AmOr41 17 399 . KQ414889.1 284523 287252 + 406 M 57 171 G 0 3 M 42 126 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 45 135 G 0 3 M 84 252 G 0 3 M 19 57 S 0 2 5 0 2 I 0 487 3 0 2 S 1 1 M 2 6 G 1 0 M 67 201 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 287252 406 + . gene_id 7 ; sequence AmOr41 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284524 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286781 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286780 286781 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 286782 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286782 286989 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284524 287252 406 + . alignment_id 7 ; Query AmOr41 ; Align 284524 18 171 ; Align 284698 75 126 ; Align 285839 118 135 ; Align 285977 163 252 ; Align 286232 247 57 ; Align 286783 267 6 ; Align 286789 270 201 ; Align 287064 337 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 355 Query range: 16 -> 268 Target range: 232456 -> 233215 17 : GluTyrSerIleGlnValAsnArgTrpLeuSerLysThrIleGlyValTrpProPheT : 36 |||||||||||||||||||||||||||!!! !! ! !!!!:|||!.!|||||| !. GluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgV 232457 : GAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTG : 232514 37 : hrSerThrThrSerLysPheGluLysIleMetThrLysIleLeuIleIleValCysSe : 55 .!!!! !||||||!:! !:!!:!!:!!:!:.!!|||:!:|||! !:!!..!||| alThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHi 232515 : TTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCA : 232571 56 : rIleIleAlaLeuPheValThrValProSerMetLeuHisPheIleLeuValLysGlu : 74 ! !:!: !:!!! ! !! !||||||!!!!!:||| !.!!:!:!!!! ! ! ! sSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThr 232572 : TTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACG : 232628 75 : AspIleIleThrLysLeuLysMetThrGlyProIleIleTyrCysIleGlyGlyGlyL : 94 ..!:!! !!:!:!!||| ! !||||||!!:! !:!!! !:!: !|||! !| SerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluL 232629 : AGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAAT : 232688 95 : euAsnTyrAlaIleLeuLeuPheLeuArgAspAspIleArgTyrCysIleGluHisIl : 113 ||||||||..! !|||||| ! !:!!||||||! !||||||:!:|||!!.:! euAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnVa 232689 : TGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGT : 232745 114 : eGluAlaAspTrpLysThrIleThrArgThrGlyAspArgGlnValMetPheLysAsn : 132 ::!! !||||||::!!.!:!!! !!:! !!! ! !!|||.!.:!!|||!!.|||||| lLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsn 232746 : GAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAAC : 232802 133 : AlaLysIleGlyArgIleIleSerGlyCysIleGlySerPheLeuGlnPheSerThrI : 152 ||||||:!!|||||| |||:!! !! ! !!.!! !! !:!!!!. !.!!..! AlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValG 232803 : GCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCG : 232862 153 : leSerTyrCysThrValPheGlyValPheLysGlnThrIleLysIleGlyAsnGluSe : 171 !||| !! ! !||| |||:!! !! !...|||.!! ! :!:||||||||||| lySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSe 232863 : GCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAG : 232919 172 : rMetGluIleHisValLeuProPheProThrTyrLysIleProValAspThrAsnLeu : 190 | ..!!!::!! !||||||! ! !! !|||! !! ! !:!!||||||!..!!! rTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPhe 232920 : TTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTC : 232976 191 : Glu<-><->HisGlyIleValLeuGlyPheGlnTyrLeuThrAlaCysIleMetThrA : 208 ... :!!! !|||:!!!!!! !.!.|||! !|||:!!!.!! !|||:!!!.!: SerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnS 232977 : AGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACT : 233036 209 : laThrIleIleIleAlaPheSerLeuAlaThrValPheAlaCysHisAlaValGlyGl : 227 !!..!! !:!: !|||! !.!!|||!.!.!!|||.!.||| |||||| !||||| erValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGl 233037 : CCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACA : 233093 228 : nLeuThrIleMetValThrTrpIleGluGluPheValAsnArgProGlnGluGluLys : 246 ||||!.!:!::!!:!!:!! :!:!!:!!:!!.|||:!! ! ! !:!!|||:!! nLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGlyGlnGluGlu 233094 : GCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAGGAGGAG : 233150 247 : LysAsnMetArgIleAsnGluIleSerValIleIleGluHisHisLeuArgIleLeuS : 266 !:! :!: ! !..:!!:!!.!! !!|||:!:|||||||||||||||! !|||! Arg---ValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeuA 233151 : AGA---GTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTAA : 233207 267 : erPheLeu : 268 !!!:!||| rgTyrLeu 233208 : GGTATTTG : 233215 vulgar: AmOr41 16 268 . KQ414889.1 232456 233215 + 355 M 175 525 G 0 6 M 56 168 G 1 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232457 233215 355 + . gene_id 8 ; sequence AmOr41 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232457 233215 . + . KQ414889.1 exonerate:protein2genome:local exon 232457 233215 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 232457 233215 355 + . alignment_id 8 ; Query AmOr41 ; Align 232457 17 525 ; Align 232988 192 168 ; Align 233156 249 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 292 Query range: 5 -> 265 Target range: 226894 -> 227677 6 : ValAlaIleGlnLysLysPheGlySerLeuAsnGluTyrSerIleGlnValAsnArgT : 25 :!!|||! !:!!!!. ! !:! !..!! ! .!. |||||||||:!!||||||| LeuAlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgT 226895 : CTCGCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTT : 226952 26 : rpLeuSerLysThrIleGlyValTrpProPheThrSerThrThrSerLysPheGluLy : 44 |||||! !||| !!:!!|||:!!||||||! :!! !!! !!:!|||::!.!.! !!: rpLeuLeuLysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGlyAr 226953 : GGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAG : 227009 45 : sIleMetThrLysIleLeuIleIleValCysSerIleIleAlaLeuPheValThrVal : 63 ! !.!.:!! !:!::!! !.!!:!!|||! ! :!: ! !|||! ! !||| gCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuVal 227010 : ATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTC : 227066 64 : ProSerMetLeuHisPheIleLeuValLysGluAspIleIleThrLysLeuLysMetT : 83 !!||| |||:!! ! :!!|||! ! !:!!! ! ! !!.!! !|||||||||! SerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetI 227067 : TCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGA : 227126 84 : hrGlyProIleIleTyrCysIleGlyGlyGlyLeuAsnTyrAlaIleLeuLeuPheLe : 102 !||||||!!: !!:!! ! !..! !|||!!.|||:!!!!:||| !|||! leGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHi 227127 : TCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCA : 227183 103 : uArgAspAspIleArgTyrCysIleGluHisIleGluAlaAspTrpLysThrIleThr : 121 !..!|||||||||! ! ! |||:!!|||!..|||:!! !|||||||||!.!|||! ! sGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArg 227184 : CGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGA : 227240 122 : ArgThrGlyAspArgGlnValMetPheLysAsnAlaLysIleGlyArgIleIleSerG : 141 ! !! !||||||.!.|||||| ! ! ! !!||| ! !||||||! !:!:! ! TyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleT 227241 : TACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCA : 227300 142 : lyCysIleGlySerPheLeuGlnPheSerThrIleSerTyrCysThrValPheGlyVa : 160 ! ! ! !! !|||:!! ||| ::: ::: ! !||| ! !:! hrIleCysThrPhePheValPheSerSerPheValPhePheTyrIleValValProIl 227301 : CTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTAT : 227357 161 : lPheLysGlnThrIleLysIleGlyAsnGluSerMetGluIleHisValLeuProPhe : 179 ! ! !!:!:!! !! ! !:!!! !!:! ... ! ! !:!!|||||| eAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPhe 227358 : CAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTT : 227414 180 : ProThrTyrLysIleProValAspThrAsnLeuGlu<-><->HisGlyIleValLeuG : 197 ||| ! |||||| !!.!|||..!..!! !... :!!! !||| !!!!!. ProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheS 227415 : CCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTT : 227474 198 : lyPheGlnTyrLeuThrAlaCysIleMetThrAlaThrIleIleIleAlaPheSerLe : 216 .! ! |||!:!:!!|||!.! !:!::!! !!.!..!! ! !|||! !|||:! erValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMe 227475 : CGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTAT : 227531 217 : uAlaThrValPheAlaCysHisAlaValGlyGlnLeuThrIleMetValThrTrpIle : 235 !|||.!!:!!.!!||| !|||||| !||||||:!! !:!::!!|||:!!|||:!: tAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeu 227532 : GGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTG : 227588 236 : GluGluPheValAsnArgProGlnGluGluLysLysAsnMetArgIleAsnGluIleS : 255 ! !.!.!!.:!!:!! !! ! !!!: !!..|||!..:!! ! :!!..!|||: GlyHisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAsp---AspArgIleA 227589 : GGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGAT---GATAGAATCG : 227645 256 : erValIleIleGluHisHisLeuArgIleLeu : 265 !! !|||:!! ||||||:!!||||||||| laSerIleValThrHisHisValArgIleLeu 227646 : CTAGCATCGTCACTCACCACGTTCGAATATTG : 227677 vulgar: AmOr41 5 265 . KQ414889.1 226894 227677 + 292 M 186 558 G 0 6 M 59 177 G 1 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226895 227677 292 + . gene_id 9 ; sequence AmOr41 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226895 227677 . + . KQ414889.1 exonerate:protein2genome:local exon 226895 227677 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226895 227677 292 + . alignment_id 9 ; Query AmOr41 ; Align 226895 6 558 ; Align 227459 192 177 ; Align 227636 252 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 283 Query range: 5 -> 265 Target range: 208176 -> 208959 6 : ValAlaIleGlnLysLysPheGlySerLeuAsnGluTyrSerIleGlnValAsnArgT : 25 :!! !:!!.!.!:!!!.!:! !!:! ! ...!:!!:!:!!!:::!!||| !| IlePheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValT 208177 : ATATTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGT : 208234 26 : rpLeuSerLysThrIleGlyValTrpProPheThrSerThrThrSerLysPheGluLy : 44 || !! !|||! !|||||| !|||||| :!!! ! ! !||| !!!.|||!! rpThrLeuLysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAs 208235 : GGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAA : 208291 45 : sIleMetThrLysIleLeuIleIleValCysSerIleIleAlaLeuPheValThrVal : 63 .! !..! !! :!!|||! !:!!:!! !! ! !:!: ! !|||:!!..!:!! nSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIle 208292 : CAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATA : 208348 64 : ProSerMetLeuHisPheIleLeuValLysGluAspIleIleThrLysLeuLysMetT : 83 |||!!! :!! ! ||||||||| ||||||.!! ! !:!!||||||!!: ProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleC 208349 : CCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCT : 208408 84 : hrGlyProIleIleTyrCysIleGlyGlyGlyLeuAsnTyrAlaIleLeuLeuPheLe : 102 !.!! !!:!:! !!:!! !!!: !!.! ! !!!.|||!.!|||:!! ! !!! ysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValAr 208409 : GTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCG : 208465 103 : uArgAspAspIleArgTyrCysIleGluHisIleGluAlaAspTrpLysThrIleThr : 121 !..!! !||||||||| ! |||:!!|||:!!:!!||||||||||||!:!!.!:!: ! gGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGlu 208466 : CGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAG : 208522 122 : ArgThrGlyAspArgGlnValMetPheLysAsnAlaLysIleGlyArgIleIleSerG : 141 !.! !! !||||||:!!:!!|||!!. ! ||||||!...!!!.!|||! !:!:! !! HisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleV 208523 : CACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCG : 208582 142 : lyCysIleGlySerPheLeuGlnPheSerThrIleSerTyrCysThrValPheGlyVa : 160 ! !|||:!!|||:!! ! .!....||| ||| !!.!!!. !:! alIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLe 208583 : TGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCT : 208639 161 : lPheLysGlnThrIle<-><->LysIleGlyAsnGluSerMetGluIleHisValLeu : 177 ! !::!.!.! !:!! :!! !|||||| !!!! ..!! ! |||! ! uThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyr 208640 : CACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTAT : 208696 178 : ProPheProThrTyrLysIleProValAspThrAsnLeuGluHisGlyIleValLeuG : 197 ||| !!|||! !!:!! :!: !||| !!:!! !! !:!!! !||| !!! ! ProValProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrT 208697 : CCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATA : 208756 198 : lyPheGlnTyrLeuThrAlaCysIleMetThrAlaThrIleIleIleAlaPheSerLe : 216 ! ! |||! |||:!!!.!! !:!! ! !! !! :!! |||! !.!!|| hrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLe 208757 : CGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTT : 208813 217 : uAlaThrValPheAlaCysHisAlaValGlyGlnLeuThrIleMetValThrTrpIle : 235 ||||.!!:!!.!!||| |||||| !||||||||| !|||:!!:!!:!!|||!!: uAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMet 208814 : GGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATG : 208870 236 : GluGluPheValAsnArgProGlnGluGluLysLysAsnMetArgIleAsnGluIleS : 255 |||:!!!!.|||:!! !!! !:!!!!:|||:!!||||||:!! ! .!...!:!:: GluLysLeuValAspGlyArgGluAspGluGluLysAsnLeuAsp---GlnArgLeuA 208871 : GAGAAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGAT---CAGAGGTTGG : 208927 256 : erValIleIleGluHisHisLeuArgIleLeu : 265 !! !|||:!:|||!!.|||:!!|||:!::!! laAsnIleValGluGlnHisValArgValIle 208928 : CTAATATCGTGGAGCAGCATGTTCGAGTGATC : 208959 vulgar: AmOr41 5 265 . KQ414889.1 208176 208959 + 283 M 160 480 G 0 6 M 85 255 G 1 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208177 208959 283 + . gene_id 10 ; sequence AmOr41 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208177 208959 . + . KQ414889.1 exonerate:protein2genome:local exon 208177 208959 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208177 208959 283 + . alignment_id 10 ; Query AmOr41 ; Align 208177 6 480 ; Align 208663 166 255 ; Align 208918 252 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 273 Query range: 17 -> 265 Target range: 278576 -> 279338 18 : TyrSerIleGlnValAsnArgTrpLeuSerLysThrIleGlyValTrpProPheThrS : 37 ||||||:!!|||:!!|||||||||!!! !||| !!|||||||||||||||.!!!:! TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 38 : erThrThrSerLysPheGluLysIleMetThrLysIleLeuIleIleValCysSerIl : 56 ! !..!!!!! !!.|||||||||! :!! !:!!||| :!!:!! !!!!!.! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 57 : eIleAlaLeuPheValThrValProSerMetLeuHisPheIleLeuValLysGlu<-> : 75 !:!: ! !|||:!! !||||||!!! ||| ! :!:|||! !||| eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 76 : AspIleIleThrLysLeuLysMetThrGlyProIleIleTyrCysIleGlyGlyGlyL : 94 |||:!! !||||||:!!||||||! !||||||:!!! !!:!|||! !!.! !: AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 95 : euAsnTyrAlaIleLeuLeuPheLeuArgAspAspIleArgTyrCysIleGluHisIl : 113 !!!!.||| !||||||:!!! ! ! !!! ! ! ||| !! ! |||:!:.!. !!|| leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 114 : eGluAlaAspTrpLys<-><-><->ThrIleThrArgThrGlyAspArgGlnValMet : 129 |....!!||||||... :!! ! ::: :::|||::::::||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 130 : PheLysAsnAlaLysIleGlyArgIleIleSerGlyCysIleGlySerPheLeuGlnP : 149 ! !:!|||!:!||||||||| !:!::!! !! !! !!.!.!!|||:!! ! ! ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 150 : heSerThrIleSerTyrCysThrValPheGlyValPheLys<->GlnThrIleLysIl : 167 !.!! !:!!! !||| !.!!|||.!. !:!!||| ! !::||| ! || erGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIl 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCAT : 279039 168 : eGlyAsnGluSerMetGluIleHisValLeuProPheProThrTyrLysIleProVal : 186 |! !||||||!!!:!!..! !!!.!.!!!!|||.!! ! ! ! :!! ! ! eAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 279040 : CGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCG : 279096 187 : AspThrAsnLeuGluHisGlyIleValLeuGlyPheGlnTyrLeuThrAlaCysIleM : 206 !|||!:!! !..! !! !||||||! ! !.!.|||! !|||.!!|||! !:!!: ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValL 279097 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTT : 279156 207 : etThrAlaThrIleIleIleAlaPheSerLeuAlaThrValPheAlaCysHisAlaVa : 225 !: !:!!..!! !:!! !|||! !|||||| !.!!||||||!.! |||!.! euTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCy 279157 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTG : 279213 226 : lGlyGlnLeuThrIleMetValThrTrpIleGluGluPheValAsnArgProGlnGlu : 244 !||||||!!!! !|||:!:|||||| !:!:!!::!!.!!:!!:!! !! !:!!! ! sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLysGly 279214 : TGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGG : 279270 245 : GluLysLys<->AsnMetArgIleAsnGluIleSerValIleIleGluHisHisLeuA : 263 ..!|||!.. !:!! !!.! !.!...!:!:.!!! !||||||||||||||||||! ArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuL 279271 : AGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGA : 279330 264 : rgIleLeu : 265 :!|||||| ysIleLeu 279331 : AGATACTG : 279338 vulgar: AmOr41 17 265 . KQ414889.1 278576 279338 + 273 M 57 171 G 0 3 M 44 132 G 0 9 M 44 132 G 0 3 M 85 255 G 0 3 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 279338 273 + . gene_id 11 ; sequence AmOr41 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278577 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279338 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278577 279338 273 + . alignment_id 11 ; Query AmOr41 ; Align 278577 18 171 ; Align 278751 75 132 ; Align 278892 119 132 ; Align 279027 163 255 ; Align 279285 248 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 267 Query range: 16 -> 265 Target range: 289732 -> 290479 17 : GluTyrSerIleGlnValAsnArgTrpLeuSerLysThrIleGlyValTrpProPheT : 36 ...|||!!!.!!:!!:!! !!.!|||:!!! !||| !!||||||:!!!::||||||. ArgTyrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrProPheV 289733 : CGTTACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCG : 289790 37 : hr<->SerThrThrSerLysPheGluLysIleMetThrLysIleLeuIleIleValCy : 54 .! ||| !.!!|||!:! !|||::!! !:!! !:!:||||||:!:||||| alPheSerArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLeuValCy 289791 : TCTTTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATG : 289847 55 : sSerIleIleAlaLeuPheValThrValProSerMetLeuHisPheIleLeuValLys : 73 |!!! ||| !! !|||:!!! !||||||! !! ! !||| !!:!!!!! ! ! sCysSerIleLeuGlnPheIleIleValProPheSerHisHisValLeuPheSerAsp 289848 : TTGCTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGAC : 289904 74 : GluAspIleIleThrLysLeuLysMetThrGlyProIleIleTyrCysIleGlyGlyG : 93 .!.|||!!:! !||| :!!|||! !||||||:!:! !:!|||:!: ! ! AsnAspMetAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuThrThrP 289905 : AACGACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGT : 289964 94 : lyLeuAsnTyrAlaIleLeuLeuPheLeuArgAspAspIleArgTyrCysIleGluHi : 112 !!!!!!.|||..! !!!! !.!. ! !!...! ||| !! !|||:!::!!|| hePheLysTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysValLysHi 289965 : TCTTCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACA : 290021 113 : sIleGluAlaAspTrpLysThrIleThrArgThrGlyAspArgGlnValMetPheLys : 131 ||||||| !|||||||||! !:!: ! ! !! ! !!||| :!!|||.!!!:! sIleGluArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMetLeuArg 290022 : CATCGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGA : 290078 132 : AsnAlaLysIleGlyArgIleIleSerGlyCysIleGlySerPheLeuGlnPheSerT : 151 !!!.!! !!!:.!!|||! !:!!! ! ! !!.!! !|||||| ! .!..!! TyrValThrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyG 290079 : TACGTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTG : 290138 152 : hrIleSerTyrCysThrValPheGlyValPheLysGlnThrIleLysIleGlyAsnGl : 170 !:!:|||||| !||||||.!. !:!!|||..!:!!! !! ! !! !||||||! lyLeuSerTyrAsnThrValIleProLeuPheSerLysLysSerValAsnGlyAsnVa 290139 : GTCTGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGGTAACGT : 290195 171 : uSerMetGluIleHisValLeuProPheProThrTyrLysIleProValAspThrAsn : 189 !!!!!!:..! !! ..!! !||| ! ! ! ! .!! !|||.!.! !!:! lThrIleArgProLeuThrTyrProGlyTyrGluGluPhePheAspValGlnLysSer 290196 : GACTATCAGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGT : 290252 190 : LeuGluHisGlyIleValLeuGlyPheGlnTyrLeuThrAlaCysIleMetThrAlaT : 209 ! !! !:!!! !||||||!!! !!.!.!!.! !:!! !!.! |||! !.!! !! ProAlaTyrGluIleValPheCysMetHisCysValTyrValMetIleThrAlaAsnI 290253 : CCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACA : 290312 210 : hrIleIleIleAlaPheSerLeuAlaThrValPheAlaCysHisAlaValGlyGlnLe : 228 !! !!!: |||!:!||||||.!!|||:!!|||||| !|||.!! !||||||:! leThrMetAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGlnIl 290313 : TCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGAT : 290369 229 : uThrIleMetValThrTrpIleGluGluPheValAsnArgProGlnGluGluLysLys : 247 !! !|||.....!||| !!:!:|||!!:.!...!!!.||| !..! ! !:!!||| eLysIleGlnThrThrArgLeuGluAspLeuThrLysArgGlyMetLeuLeuGluLys 290370 : TAAGATACAAACGACGCGGCTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAGAAG : 290426 248 : AsnMetArgIleAsnGluIleSerValIleIleGluHisHisLeuArgIleLeu : 265 ...:!!!!! :!!...:!::!!|||:!!:!:... !|||:!!..!|||||| GlyValSer---AspArgLeuAlaValValValSerGlyHisValGluIleLeu 290427 : GGAGTGAGT---GATCGTTTGGCGGTTGTTGTGAGCGGTCACGTGGAGATCTTG : 290479 vulgar: AmOr41 16 265 . KQ414889.1 289732 290479 + 267 M 20 60 G 0 3 M 214 642 G 1 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289733 290479 267 + . gene_id 12 ; sequence AmOr41 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289733 290479 . + . KQ414889.1 exonerate:protein2genome:local exon 289733 290479 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 289733 290479 267 + . alignment_id 12 ; Query AmOr41 ; Align 289733 17 60 ; Align 289796 37 642 ; Align 290438 252 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 244 Query range: 299 -> 404 Target range: 254071 -> 254567 300 : GluTrpSerGlyHisAspIleLysValLeuSerAlaTyrSerPheThrIleThrAsnI : 319 ||||||!!!! ! !||| !:!!:!!|||! !.!!|||! ! ! |||:!!..! !: GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaV 254072 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTG : 254129 320 : leIleLeuSerLeuPheLeuIleCysTyrIleSerGluValLeuAsnGluLys >>> : 337 !!:!! ::: |||||||||||||||||||||!!: !|||!..|||:!! alValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 254130 : TTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt... : 254185 338 : > Target Intron 1 >>>> CysLysGluIleGlyAsnIleValTyrMetThrA : 348 92 bp ||| !:!!:!!|||.!.:!:||||||||||||: ++CysLeuLysValGlyGluValValTyrMetThrA 254186 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 254308 349 : snTrpTyrArgLeuSerAspLysAspIleLeuAsnLeuIleMetIleIleIleArgSe : 367 !!|||||| !||| !!.!.!:! ||||||:!!||||||:!!||||||! !||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSe 254309 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATC : 254365 368 : rSerValGluTyrLysMetThrAlaGlyLysIleIleAspMetSerValIleThrPhe : 386 |!:!|||! !:!!!!:|||||||||||||||... ||||||:!! !|||||| rAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPhe 254366 : GAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTC : 254422 387 : SerAsn >>>> Target Intron 2 >>>> IleIleLysThrIlePheAlaTy : 396 .!!:!! 89 bp :!!:!!|||||| !|||||||| GlyAsp++ ++ValValLysThrGlyPheAlaTy 254423 : GGCGATgt.........................agGTAGTAAAAACAGGATTCGCCTA : 254541 397 : rLeuAsnIleLeuArgGlnValThr : 404 |||||||!!:||| !!|||:!!:!! rLeuAsnMetLeuCysGlnMetSer 254542 : CTTGAATATGCTTTGTCAAATGTCC : 254567 vulgar: AmOr41 299 404 . KQ414889.1 254071 254567 + 244 M 37 111 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254072 254567 244 + . gene_id 13 ; sequence AmOr41 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254072 254182 . + . KQ414889.1 exonerate:protein2genome:local exon 254072 254182 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254183 254184 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254183 254274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254273 254274 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254275 254430 . + . KQ414889.1 exonerate:protein2genome:local exon 254275 254430 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254431 254432 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254431 254519 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 254518 254519 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254520 254567 . + . KQ414889.1 exonerate:protein2genome:local exon 254520 254567 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254072 254567 244 + . alignment_id 13 ; Query AmOr41 ; Align 254072 300 111 ; Align 254275 337 156 ; Align 254520 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 239 Query range: 334 -> 404 Target range: 277548 -> 277842 335 : GluLysCysLysGluIleGlyAsnIleValTyrMetThrAsnTrpTyrArgLeuSerA : 354 ..!:!!||||||:!!:!!|||.!.:!:||||||||||||||||||||| !||| !!| ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 355 : spLysAspIleLeuAsnLeuIleMetIleIleIleArgSerSerValGluTyrLysMe : 373 ||||||||||||||||||||:!!:!:|||||| !|||||||||::: |||:: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 374 : tThrAlaGlyLysIleIleAspMetSerValIleThrPheSerAsn >>>> Targe : 389 :||||||||||||:::|||...||||||||| !||||||.!!:!! eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAsp++ 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATgt.......... : 277713 390 : t Intron 1 >>>> IleIleLysThrIlePheAlaTyrLeuAsnIleLeuArgGl : 402 84 bp :!!|||||||||! !|||||||||||||||||||||||||| ++ValIleLysThrThrPheAlaTyrLeuAsnIleLeuArgGl 277714 : ...............agGTAATAAAAACCACTTTCgcgtatttaaatattctacgCCA : 277834 403 : nValThr : 404 |..!||| nThrThr 277835 : AACGACG : 277842 vulgar: AmOr41 334 404 . KQ414889.1 277548 277842 + 239 M 54 162 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277842 239 + . gene_id 14 ; sequence AmOr41 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277549 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277842 239 + . alignment_id 14 ; Query AmOr41 ; Align 277549 335 162 ; Align 277795 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 199 Query range: 294 -> 404 Target range: 261718 -> 262201 295 : TyrCysIleLeuValGluTrpSerGlyHisAspIleLysValLeuSerAlaTyrSerP : 314 ::: :::||| ||||||:!!! !!!.||||||:!! !||||||.!!|||! !. PhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheM 261719 : ttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCA : 261776 315 : heThrIleThrAsnIleIleLeuSerLeuPheLeuIleCysTyrIleSerGluValLe : 333 !.! !:!:! ! ||| !!!!!:!:!!|||:!!||||||||||||.!!|||:!!|| etMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLe 261777 : TGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACT : 261833 334 : uAsnGluLys >>>> Target Intron 1 >>>> CysLysGluIleGlyAsnI : 343 |!..|||:!! 81 bp |||..!:!!:!!|||:!!: uThrGluGln++ ++CysSerLysValGlyAspV 261834 : AACGGAACAGgt.........................agTGCTCGAAAGTTGGTGACG : 261944 344 : leValTyrMetThrAsnTrpTyrArgLeuSerAspLysAspIleLeuAsnLeuIleMe : 362 !!||||||||||||||||||||| !||| !!||||||..!||||||:!!||||||:! alValTyrMetThrAsnTrpTyrTyrLeuProAspLysSerIleLeuAspLeuIleLe 261945 : TTGTTTACATGACAAACTGGTATTATTTACCTGATAAAAGTATCCTTGATTTGATTTT : 262001 363 : tIleIleIleArg-SerSerValGluTyrLysMetThrAlaGlyLysIleIleAspMe : 381 !|||||| !|||#!:! !! !||| !!.. !.!!.!||| ! !:!! uIleIleAlaArg#AsnArgArgGluIleSerSerAsnValGlyLeuHisValArgAr 262002 : GATCATTGCACGAAAACCGCCGGGAAATTAGTTCAAATGTCGGTTTACACGTTCGGCG : 262059 382 : t{S} >>>> Target Intron 2 >>>> {er}ValIleThrPheSerAsnIle : 389 {|} 71 bp {||} ! !.!.! !.!.:!: g{S}++ +-{er}SerProLeuIlePheGlnVal 262060 : A{T}gt.........................ac{CA}AGTCCGTTGATATTCCAGGTG : 262154 390 : IleLysThrIlePheAlaTyrLeuAsnIleLeuArgGlnValThr : 404 :!!|||||| !|||||||||||||||:!:|||||||||:!!||| ValLysThrAlaPheAlaTyrLeuAsnLeuLeuArgGlnMetThr 262155 : GTTAAAACTGCTTTCGCGTATCTGAATCTGTTGCGTCAAATGACG : 262201 vulgar: AmOr41 294 404 . KQ414889.1 261718 262201 + 199 M 42 126 5 0 2 I 0 77 3 0 2 M 30 90 F 0 1 M 15 45 S 0 1 5 0 2 I 0 67 3 0 2 S 1 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261719 262201 199 + . gene_id 15 ; sequence AmOr41 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 261719 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261719 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262062 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262062 . + . insertions 0 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local splice5 262063 262064 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 262063 262133 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 262132 262133 . + . intron_id 1 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 262134 262201 . + . KQ414889.1 exonerate:protein2genome:local exon 262134 262201 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 261719 262201 199 + . alignment_id 15 ; Query AmOr41 ; Align 261719 295 126 ; Align 261926 337 90 ; Align 262017 367 45 ; Align 262136 383 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 181 Query range: 299 -> 400 Target range: 305100 -> 305816 300 : GluTrpSerGlyHisAspIleLysValLeuSerAlaTyrSerPheThrIleThrAsnI : 319 !!:|||..!.!! !:!!! ! !|||!!!.!!|||!!! ! !:!:! !::!: AspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValLeuLeuIleSerV 305101 : GATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGTTACTGATATCTG : 305158 320 : leIleLeuSerLeuPheLeuIleCysTyrIleSerGluValLeuAsnGluLys >>> : 337 !!! !!!!!:!:!!|||:!!:!!|||||||||.!!|||:!!|||! |||||| alThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMetGluLys++ 305159 : TAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTATGGAAAAGgt... : 305214 338 : > Target Intron 1 >>>> CysLysGluIleGlyAsnIleValTyrMetThrA : 348 413 bp !!!.....:!!||| ! !!:!|||! !! ++SerSerSerValGlyLeuSerCysPheMetIleS 305215 : ......................agAGCAGTAGCGTTGGATTATCCTGTTTTATGATCA : 305658 349 : snTrpTyrArgLeuSerAspLysAspIleLeuAsnLeuIleMetIleIleIleArgSe : 367 :!||||||!.!||| !! !||| |||! !..!||||||:!:|||||| !! !|| erTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleLeuIleIleAlaMetSe 305659 : GTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTTTAATCATTGCCATGTC : 305715 368 : rSerValGluTyrLysMetThrAlaGlyLysIleIleAspMetSerValIleThrPhe : 386 |||| ! ! !|||!!:!:!|||||||||:!!:!!|||:!:|||:!! !|||||| rSerAsnProAlaLysIleSerAlaGlyLysValValAspLeuSerLeuSerThrPhe 305716 : AAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTATCTTTATCCACATTT : 305772 387 : SerAsnIleIleLysThrIlePheAlaTyrLeuAsnIleLeu : 400 .!!|||:!:! ! ! ! :::::: ::::::|||::: GlyAsnValSerTyrTyrGlnTyrSerAsnIleSerIleVal 305773 : GGAAACGTGAGTTACTATcaatattccaatatttcaattgtt : 305816 vulgar: AmOr41 299 400 . KQ414889.1 305100 305816 + 181 M 37 111 5 0 2 I 0 409 3 0 2 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305101 305816 181 + . gene_id 16 ; sequence AmOr41 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305816 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305816 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305101 305816 181 + . alignment_id 16 ; Query AmOr41 ; Align 305101 300 111 ; Align 305625 337 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 327 -> 394 Target range: 272990 -> 273191 328 : TyrIleSerGluValLeuAsnGluLysCysLysGluIleGlyAsnIleValTyrMetT : 347 |||::: ::: ::: :::||||||:::||||||.!.:!!|||||||||| TyrLeuProLysLysAsnSer***GlnCysLysLysIleGlyGluValValTyrMetT 272991 : TACttaccgaagaaaaattcttaacagtgtaaaaaaattggcGAGGTAGTTTACATGA : 273048 348 : hrAsnTrpTyrArgLeuSerAspLysAspIleLeuAsnLeuIleMetIleIleIleAr : 366 ||||||||||| !||| !!! !||||||||||||:!!||||||:!!|||||| !|| hrAsnTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerAr 273049 : CGAACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAG : 273105 367 : gSerSerValGluTyrLysMetThrAlaGlyLysIleIleAspMetSerValIleThr : 385 |!!!||||||! ! !|||!!:|||||||||!:!|||:!! !||||||||| !||| gCysSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThr 273106 : ATGCAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACG : 273162 386 : PheSerAsnIleIleLysThrIlePhe : 394 |||.!!:!!:!! ... :::||| PheGlyAspValArgSerGlnLeuPhe 273163 : TTCGGCGATGTACgttctcaattattt : 273191 vulgar: AmOr41 327 394 . KQ414889.1 272990 273191 + 180 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272991 273191 180 + . gene_id 17 ; sequence AmOr41 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272991 273191 . + . KQ414889.1 exonerate:protein2genome:local exon 272991 273191 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272991 273191 180 + . alignment_id 17 ; Query AmOr41 ; Align 272991 328 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 291 -> 399 Target range: 280067 -> 280465 292 : MetLeuSerTyrCysIleLeuValGluTrpSerGlyHisAspIleLysValLeuSerA : 311 |||! !|||! ! :!!!!! !||||||..! !:!!||| !! !! ! !! !. MetTyrSerLeuSerValPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheT 280068 : ATGTACTCGTTGTCAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCA : 280125 312 : laTyrSerPheThrIleThrAsnIleIleLeuSerLeuPheLeuIleCysTyrIleSe : 330 !!|||! !.!. !:!!! !::!:!!! !!!!:!:!!|||:!!:!!|||||||||.! hrTyrLeuMetPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGl 280126 : CGTATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGG : 280182 331 : rGluValLeuAsnGluLys >>>> Target Intron 1 >>>> CysLysGluI : 340 !|||:!!|||::!|||::: 74 bp ||| !:!!: yGluIleLeuSerGluGln++ ++CysLeuLysV 280183 : TGAAATTCTCTCCGAACaggt.........................agTGCTTAAAAG : 280286 341 : leGlyAsnIleValTyrMetThrAsnTrpTyrArgLeuSerAspLysAspIleLeuAs : 359 !!||| !..!||||||! !:!!|||||||||||| !!! ||| ! !! !.. alGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGl 280287 : TCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGG : 280343 360 : nLeuIleMetIleIleIleArgSerSerValGluTyrLysMetThrAlaGlyLysIle : 378 !||||||:!!|||.!! ! !|||!:! !... |||:!:||||||||||||||| yLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIle 280344 : TTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATC : 280400 379 : IleAspMetSerValIleThrPheSerAsnIleIleLysThrIlePheAlaTyrLeuA : 398 ||||||:!:|||:!!! !!:!|||!!!!:!:!:! !! ! !! !!!.:!!|||! !: IleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrH 280401 : ATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATC : 280460 399 : snIle : 399 !!:!: isLeu 280461 : ATTTG : 280465 vulgar: AmOr41 291 399 . KQ414889.1 280067 280465 + 178 M 45 135 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280068 280465 178 + . gene_id 18 ; sequence AmOr41 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280068 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280068 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280068 280465 178 + . alignment_id 18 ; Query AmOr41 ; Align 280068 292 135 ; Align 280277 337 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 334 -> 394 Target range: 283273 -> 283453 335 : GluLysCysLysGluIleGlyAsnIleValTyrMetThrAsnTrpTyrArgLeuSerA : 354 ..!:!!||||||:!!:!!|||.!.:!:|||||||||||||||! !!:! !||| !!| ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 355 : spLysAspIleLeuAsnLeuIleMetIleIleIleArgSerSerValGluTyrLysMe : 373 ||||||||||||||||||||:!!:!:|||||| !|||||||||::: |||:: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 374 : tThrAlaGlyLysIleIleAspMetSerValIleThrPheSerAsnIleIleLysThr : 392 :||||||...|||:::|||...||||||!.! !||||||..!:!!:!! !..! ! eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspValArgSerLeu 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTACGTTCACTT : 283445 393 : IlePhe : 394 :!!||| LeuPhe 283446 : CTTTTT : 283453 vulgar: AmOr41 334 394 . KQ414889.1 283273 283453 + 164 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283453 164 + . gene_id 19 ; sequence AmOr41 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283453 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283453 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283453 164 + . alignment_id 19 ; Query AmOr41 ; Align 283274 335 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 333 -> 389 Target range: 234979 -> 235147 334 : AsnGluLysCysLysGluIleGlyAsnIleValTyrMetThrAsnTrpTyrArgLeuS : 353 !.!:!!:!!|||! :!!:!!|||.!.! !||||||||||||.!.|||||||||||| ThrGlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuP 234980 : ACTCAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTAC : 235037 354 : erAspLysAspIleLeuAsnLeuIleMetIleIleIleArgSerSerValGluTyrLy : 372 !! !!||| ! !|||..!|||:!!||||||||| !|||||||||:!!! ! || roHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLy 235038 : CTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAA : 235094 373 : sMetThrAlaGlyLysIleIleAspMetSerValIleThrPheSerAsnIle : 389 |!!:||||||||||||.!!:!!.!.||||||||| !||||||.!!:!!:!: sIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235095 : AATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: AmOr41 333 389 . KQ414889.1 234979 235147 + 155 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234980 235147 155 + . gene_id 20 ; sequence AmOr41 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234980 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234980 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234980 235147 155 + . alignment_id 20 ; Query AmOr41 ; Align 234980 334 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 299 -> 403 Target range: 206050 -> 207604 300 : GluTrpSerGlyHisAspIleLysValLeuSerAlaTyrSerPheThrIleThrAsnI : 319 ||||||..!..!:!!:!!! !! !!.!:!!! !!.!|||! ! ! ! !::! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 320 : leIleLeuSerLeuPheLeuIleCysTyrIleSerGluValLeuAsnGluLys >>> : 337 !! !!!!!!!:!!|||:!!:!!|||||||||.!!:!!:!!|||! !!!::!! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 338 : > Target Intron 1 >>>> CysLysGluIleGlyAsnIleValTyrMetThrA : 348 81 bp ! ! ! :!:||| ! ! !! !! !..!| ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 349 : snTrpTyrArgLeuSerAspLysAspIleLeuAsnLeuIleMetIleIleIleArgSe : 367 |||||||||||||| !!:!!!:! !! ! !::!:!!|||:!!|||||| !! !|| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 368 : rSerValGluTyrLysMetThrAlaGlyLysIleIleAspMetSerValIleThrPhe : 386 |!:! ! ! |||:!:||||||||||||!!:.!!!!:||||||:!! !!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 387 : SerAsn >>>> Target Intron 2 >>>> IleIleLysThrIlePheAlaTy : 396 !!!:!! 1161 bp :!!!!:|||..! .!.!.!|| ThrAsp++ ++ValMetLysValAlaMetGlyTy 206391 : ACCGATgt.........................agGTAATGAAGGTGGCGATGGGATA : 207581 397 : rLeuAsnIleLeuArgGlnVal : 403 |!!!||||||||||||:!!||| rPheAsnIleLeuArgGluVal 207582 : CTTCAACATACTCCGTGAAGTC : 207604 vulgar: AmOr41 299 403 . KQ414889.1 206050 207604 + 152 M 37 111 5 0 2 I 0 77 3 0 2 M 52 156 5 0 2 I 0 1157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 207604 152 + . gene_id 21 ; sequence AmOr41 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206398 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206398 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206399 206400 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206399 207559 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 207558 207559 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 207560 207604 . + . KQ414889.1 exonerate:protein2genome:local exon 207560 207604 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 207604 152 + . alignment_id 21 ; Query AmOr41 ; Align 206051 300 111 ; Align 206243 337 156 ; Align 207560 389 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 16 -> 116 Target range: 299686 -> 299989 17 : GluTyrSerIleGlnValAsnArgTrpLeuSerLysThrIleGlyValTrpPro<->P : 35 .!.|||!!!:!:|||:!! !!:!||||||! !||| !!||||||||||||! ! . HisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpArgLeuL 299687 : CATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGCGATTGC : 299744 36 : heThrSerThrThrSerLysPheGluLysIleMetThrLysIleLeuIleIleValCy : 54 !. !..! !:!!||||||.!.||| ! :!!:!::!!! :!!|||!!:! !:!!|| euAspGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMetThrIleCy 299745 : TAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATGACAATATG : 299801 55 : sSerIleIleAlaLeuPheValThrValProSerMetLeuHisPheIleLeuValLys : 73 |! ! !! ! !!!!|||:!!..!:!!|||||| ! !:!!.!!.!!!!!!.!:!! sPheSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePhePheAlaGlu 299802 : CTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCTTCGCGGAG : 299858 74 : GluAspIleIleThrLysLeuLysMetThrGlyProIleIleTyrCysIleGlyGlyG : 93 :!!..!||| !..!|||:!!|||:!: !||||||:!! !!:!|||:!!..!..! LysSerIleHisValLysValLysValPheGlyProValGlyPheCysLeuSerSerI 299859 : AAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCA : 299918 94 : lyLeuAsnTyrAlaIleLeuLeuPheLeuArgAspAspIleArgTyrCysIleGluHi : 112 !:!!!!.|||..! !|||! !.!. ! !!! !! .!!..! ||||||:!!|| leValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCysIleGlnHi 299919 : TCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGCATCCAACA : 299975 113 : sIleGluAlaAsp : 116 |:!!||| !||| sValGluArgAsp 299976 : CGTCGAGAGAGAC : 299989 vulgar: AmOr41 16 116 . KQ414889.1 299686 299989 + 149 M 18 54 G 0 3 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299687 299989 149 + . gene_id 22 ; sequence AmOr41 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299687 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299687 299989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299687 299989 149 + . alignment_id 22 ; Query AmOr41 ; Align 299687 17 54 ; Align 299744 35 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 335 -> 392 Target range: 244655 -> 244826 336 : LysCysLysGluIleGlyAsnIleValTyrMetThrAsnTrpTyrArgLeuSerAspL : 355 :!!||| !:!!:!!|||.!.:!:||||||||||||:!!|||||| !||| !!.!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 356 : ysAspIleLeuAsnLeuIleMetIleIleIleArgSerSerValGluTyrLysMetTh : 374 :! ||||||:!!||||||:!!||||||! !||||||!:!:!!! !:!!!!:|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 375 : rAlaGlyLysIleIleAspMetSerValIleThrPheSerAsnIleIleLysThr : 392 ||||||||||:!!:!! !!||||||:!! !||||||.!!:!!:!!! !:!!||| rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThr 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 244826 vulgar: AmOr41 335 392 . KQ414889.1 244655 244826 + 148 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244826 148 + . gene_id 23 ; sequence AmOr41 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244826 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244826 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244826 148 + . alignment_id 23 ; Query AmOr41 ; Align 244656 336 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 15 -> 226 Target range: 194165 -> 194795 16 : AsnGluTyrSerIleGlnValAsnArgTrpLeuSerLysThrIleGlyValTrpProP : 35 !.!||||||:!!:!!!:!||| !:! !||| !! ! !!||||||:!!|||||| ThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProA 194166 : ACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAA : 194223 36 : heThrSerThrThrSerLysPheGluLysIleMetThrLysIleLeuIleIleValCy : 54 !..!:!! ! !! ! ! ::!:!:.!..!!:!!! ! !:!::!! !!.. rgGluAspSerLeuArgAspArgValArgLeuPheAlaGlnThrGlyValValPheAl 194224 : GGGAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTTCGC : 194280 55 : sSerIleIleAlaLeuPheValThrValProSerMetLeuHisPheIleLeuValLys : 73 ! :!: !! !|||:!! !|||||| !:!!:!!:!! ! !!!!! ! a------LeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCys 194281 : T------TTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGC : 194331 74 : GluAspIleIleThrLysLeuLysMetThrGlyProIleIleTyrCysIleGlyGlyG : 93 ||||||:!:! ! ! ! :!!|||:!:! !!.! !! !:!:!:! !!:!: !!.! GluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaI 194332 : GAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGA : 194391 94 : lyLeuAsnTyrAlaIleLeuLeuPheLeuArgAspAspIleArgTyrCysIleGluHi : 112 !:!!!!.!:! !! :!!:!! ! !||| ! !!:||||||!:!|||:!: !.! leIleLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGl 194392 : TCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGA : 194448 113 : sIleGluAlaAspTrpLysThrIleThrArgThrGlyAspArgGlnValMetPheLys : 131 .!!:|||.!!.!.!::!:! !:!: ! !! !! !||||||||||||||| !!. uMetGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsn 194449 : GATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAAT : 194505 132 : AsnAlaLysIleGlyArgIleIleSerGlyCysIleGlySerPheLeuGlnPheSerT : 151 !|||||||||||||||.!!.!!!!! ! ! !.!!.!!! ! ! !.!!. CysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyA 194506 : TGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCG : 194565 152 : hrIleSerTyrCysThrValPheGlyValPheLysGlnThrIleLysIleGlyAsnGl : 170 !!:!: !!||| !! !:!!.!. !:!!.!...!:!!! !||| ! ! !:!!.! laLeuProTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGluAspAs 194566 : CTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAA : 194622 171 : uSerMetGluIleHisValLeuProPheProThrTyrLys<->IleProValAspThr : 188 .|||! :!!|||! !:!!! ! !!!. !!.!||| .!! !!:!!!!: ! nSerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAsp 194623 : CAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGAC : 194679 189 : AsnLeuGluHisGlyIleValLeuGlyPheGlnTyrLeuThrAlaCysIleMetThrA : 208 :::! ! :!!! !|||..!!!!! !! ||| |||! !::! !!|||!!: !: SerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuS 194680 : TCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGT : 194739 209 : laThrIleIleIleAlaPheSerLeuAlaThrValPheAlaCysHisAlaValGly : 226 !!|||! ! ! !!:!||||||!.!.!!..!.!! ! |||..! !||| erThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGly 194740 : CGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGC : 194795 vulgar: AmOr41 15 226 . KQ414889.1 194165 194795 + 123 M 39 117 G 2 0 M 127 381 G 0 3 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194166 194795 123 + . gene_id 24 ; sequence AmOr41 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194166 194795 . + . KQ414889.1 exonerate:protein2genome:local exon 194166 194795 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 194166 194795 123 + . alignment_id 24 ; Query AmOr41 ; Align 194166 16 117 ; Align 194283 57 381 ; Align 194667 184 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 336 -> 389 Target range: 301877 -> 302036 337 : CysLysGluIleGlyAsnIleValTyrMetThrAsnTrpTyrArgLeuSerAspLysA : 356 |||!..:!!||||||::: ! !||| !! !:!!||||||!.!||| !!! ||| CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysA 301878 : TGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGA : 301935 357 : spIleLeuAsnLeuIleMetIleIleIleArgSerSerValGluTyrLysMetThrAl : 375 !! !:!!||||||:!::!!! !:!:! !|||..! ! ! |||:!:||||| rgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAl 301936 : GAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGC : 301992 376 : aGlyLysIleIleAspMetSerValIleThrPheSerAsnIle : 389 ||||||||||||||||:!:|||:!!! !|||||||||::!:!! aGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301993 : AGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: AmOr41 336 389 . KQ414889.1 301877 302036 + 118 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301878 302036 118 + . gene_id 25 ; sequence AmOr41 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301878 302036 118 + . alignment_id 25 ; Query AmOr41 ; Align 301878 337 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 299 -> 352 Target range: 258264 -> 258423 300 : GluTrpSerGlyHisAspIleLysValLeuSerAlaTyrSerPheThrIleThrAsnI : 319 ||||||||| !!..||||||::: ||||||:::|||! !.!.! !:!!! !:::: GluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheMetIleLeuIleSerL 258265 : gaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTATGATACTCATATcac : 258322 320 : leIleLeuSerLeuPheLeuIleCysTyrIleSerGluValLeuAsnGluLysCysLy : 338 :: ...::::::|||:::||||||||||||.!!|||:!!|||!..|||:!! euSerPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluGlnValPr 258323 : tttctttcaatatttttgtaatatgttACATAGGTGAAATATTAACAGAACAGGTACC : 258379 339 : sGluIleGlyAsnIleValTyrMetThrAsnTrpTyrArgLeu : 352 |||||| |||||| ..!:!! !::...||| oGluIle***LeuIleValThrTyrValHisLysTrpAsnLeu 258380 : agagatttaattaattgtcaCATATGTACACAAATGGaacttg : 258423 vulgar: AmOr41 299 352 . KQ414889.1 258264 258423 + 102 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258265 258423 102 + . gene_id 26 ; sequence AmOr41 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 258265 258423 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258423 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258265 258423 102 + . alignment_id 26 ; Query AmOr41 ; Align 258265 300 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 844 Query range: 9 -> 402 Target range: 262825 -> 265004 10 : LysLysPheGlySerLeuAsnGluTyrSerIleGlnLeuAsnArgTrpLeuSerLysM : 29 :!!!..||||||||||||!:!!!:||||||:!:|||:!!|||||||||||| !||| GluSerPheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysP 262826 : GAAAGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAAC : 262883 30 : etIleGlyValTrpProLeuProSerPheThrSerLysPheGluLysIleMetThrLy : 48 !||||||!.!||||||||| !!:!!! ! !|||!:!.!.|||::!|||!!: ! roIleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPh 262884 : CGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTT : 262940 49 : sIleLeuIlePhePheTyrTrpIleIleLeuLeuPheIleIleLeuAlaSerSerLeu : 67 :!!|||||| !! !!! !!:: !:!!:!!|||! !! !:!!:!! !!|||! !||| eLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeu 262941 : TCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTT : 262997 68 : HisPheLeuPheValLysGluAspIleValSerLysLeuLysThrLeuGlyProIleS : 87 |||.!!:!!.!.! ! |||:!!.!! !! !||||||:!!..!|||||||||:!!. HisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuG 262998 : CATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCG : 263057 88 : erTyrCysPheGlyGlyGlyPheAsnTyrAlaValLeuLeuLeuArgLysAsnAspIl : 106 !! ! !! |||! !||| !.!!||||||.!! !|||||||||!.!!..!!.||||| lyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIl 263058 : GTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATAT : 263114 107 : eArgTyrCysIleGluHisIleGluThrAspTrpLysIleIleLysArgMetGluAsp : 125 |!:! !|||:!::!!|||:!::!! !|||||| |||:!:! |||:!!|||||| eGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAsp 263115 : ACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGAT : 263171 126 : GlnGlnValMetLeuLysSerAlaLysIleGlyArgIleIleSerGlyCysIleAlaG : 145 |||!:::!!|||||||||!:!|||||| !|||||| !:!::!!!.!! ! !||| GlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaI 263172 : CAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGA : 263231 146 : lyPheMetHisIleGlyThrPheCysPheCysIleValLeuGlyValLeuLysArgTh : 164 !||||||!!.! .!!! !.!.||| |||:!!||| !!.! !! !! !!:!.. lePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnVa 263232 : TCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGT : 263288 165 : rIleLysIleGlyAsnAspSerMetGluMetTyrValLeuProPheProThrTyrLys : 183 !|||:!! !||||||!!:!!!! :!: !:!!||||||! !|||..!|||||| lIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLys 263289 : GATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAA : 263345 184 : <-><->IleProValAspThrAsnProGlyHisGlyIleIleLeuSerLeuGlnTyrL : 201 ||||||||||||||||||||| !:!!! !|||.!!|||:!! !|||!:!| GluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheL 263346 : GAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTC : 263405 202 : euThrSerTyrThrSerSerAlaThrValValIleAlaPheSerLeuAlaThrValPh : 220 ||:!!.!!!:!! ! !!!!||||||..!||| !||||||.!!:!!.!!.!!||||| euSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPh 263406 : TGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTT : 263462 221 : eAlaTyrHisAlaIleGlyGlnLeuThrIleMetIleSerTrpIleGlnGluPheVal : 239 |||| !|||||| !|||||||||!.!:!::!!!!:||||||||| !||||||||| eAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheVal 263463 : CGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTG : 263519 240 : AsnGlnProGlnLysGlnAsnLysAsnIleArgIleAspGluIleSerIleIleIleG : 259 |||||| !!::! ! :!!|||||||||:!! !.!! !||||||.!!:!:|||:!!| AsnGlnSerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValG 263520 : AACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTG : 263579 260 : luHisHisLeuArgIleLeu{Se} >>>> Target Intron 1 >>>> {r}Ph : 267 ||||||||||||||:!!|||{||} 833 bp {|}|| luHisHisLeuArgValLeu{Se}++ --{r}Ph 263580 : AACATCATCTGAGAGTTCTG{AG}gt.........................ct{T}TT : 264436 268 : eLeuGluArgThrGluHisLeuLeuSerProIleCysPheMetGlu<->MetPheLys : 285 |:!! ! !!|||.!. ! ! ... ...|||...::::!! :!!! !!:! eIleTyrCysThrAsnCysAspLysAspAsnPheCysLeuLeuGlnCysLeuSerArg 264437 : TATCTATTGCACAAATTGTGATAAagacaatttttgtttacttcAGTGTTTGTCCAGG : 264493 286 : AsnIleLeuSerIleCysMetPheSerTyrCysIleLeuAlaGluTrpSerGluArgA : 305 :!!|||:!!! !:!!!! ! .!.!!! ! !:!!!!! !||||||..!...!..| AspIleIlePheVal***AsnIleThrIleAspValPheGlnGluTrpGluSerHisA 264494 : GATATAATATTTGTATGAAATATAACAATTGACGTTTTTCAGGAATGGGAAAGTCAtg : 264553 306 : spIleArgValLeuGlyIleTyrThrPheAlaValMetAsnValIleLeuSerThrPh : 324 |||||::: ||| !! !||| !.!. !:!!!!:::::!! ! !!:!! !|| spIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerMetCysGlyAsnIlePh 264554 : atattcaaaatttgacTACATATTTCATGATACTGATATCAATGTGCGGCAACATTTT : 264610 325 : eLeuIleCysTyrIleGlyGluValLeuThrGluArg >>>> Target Intron : 337 ||||!!:|||||||||||||||:!!|||||||||::: 78 bp eLeuMetCysTyrIleGlyGluIleLeuThrGluGln++ 264611 : TCTAATGTGTTATATCGGCGAGATATTGACTGAGcaggt................... : 264651 338 : 2 >>>> CysLysGluIleGlyAsnMetValTyrMetThrAsnTrpTyrHisLeuPr : 353 ||||||:!!:!!|||.!.:!!|||||||||:!!|||||||||:!!||||| ++CysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuPr 264652 : ......agTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACC : 264775 354 : oAspLysAspIlePheAsnLeuIleMetIleIleValArgSerGlyValGluTyrLys : 372 | !!|||||||||.!!:!!||||||:!:||||||:!!||||||.!!|||! !!:!||| oTyrLysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLys 264776 : CTACAAAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAA : 264832 373 : MetThrAlaGlyLysIleIleAspIleSerValIleThrPheGlyAsn >>>> Tar : 389 .!.|||||||||||||||:!! !!!!:|||:!! !||||||.!!:!! PheThrAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264833 : TTCACCGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt........ : 264885 390 : get Intron 3 >>>> IleValLysThrValPheValTyrLeuAsnIleLeuArg : 401 80 bp :!!:!!|||:!! !|||..!|||||||||:!!|||||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArg 264886 : .................aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGC : 264999 402 : Gln : 402 ||| Gln 265000 : CAA : 265004 vulgar: AmOr48 9 402 . KQ414889.1 262825 265004 + 844 M 174 522 G 0 6 M 82 246 S 0 2 5 0 2 I 0 829 3 0 2 S 1 1 M 16 48 G 0 3 M 54 162 5 0 2 I 0 74 3 0 2 M 52 156 5 0 2 I 0 76 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262826 265004 844 + . gene_id 1 ; sequence AmOr48 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262826 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262826 263601 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 264434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264433 264434 . + . intron_id 0 ; splice_site "CT" KQ414889.1 exonerate:protein2genome:local cds 264435 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264435 264648 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264726 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265004 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265004 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262826 265004 844 + . alignment_id 1 ; Query AmOr48 ; Align 262826 10 522 ; Align 263354 184 246 ; Align 264436 267 48 ; Align 264487 283 162 ; Align 264727 337 156 ; Align 264963 389 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 737 Query range: 5 -> 298 Target range: 274347 -> 275306 6 : ValAlaValGlnLysLysPheGlySerLeuAsnGluTyrSerIleGlnLeuAsnArgT : 25 :!! !||| !!!.|||! !||||||!:!!!:||||||:!:||||||||||||| IleAsnValThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgT 274348 : ATAAACGTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGAT : 274405 26 : rpLeuSerLysMetIleGlyValTrpProLeuProSerPheThrSerLysPheGluLy : 44 ||!!!! !||| ||||||!.!||||||||| !!||| !|||!!!|||||||||:: rpPheLeuLysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGluAr 274406 : GGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACG : 274462 45 : sIleMetThrLysIleLeuIlePhePheTyrTrpIleIleLeuLeuPheIleIleLeu : 63 !|||:!::!! ! :::|||||||||... ::: !.!!:!!|||! !! !:!!:!! gIleLeuSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIle 274463 : AATCCTTTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATC : 274519 64 : AlaSerSerLeuHisPheLeuPheValLysGluAspIleValSerLysLeuLysThrL : 83 !!|||! !!!!|||.!!:!!.!.||| ! |||..!:!! ! !||||||||| !| ProSerIlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuL 274520 : CCAAGCATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGC : 274579 84 : euGlyProIleSerTyrCysPheGlyGlyGlyPheAsnTyrAlaValLeuLeuLeuAr : 102 ||||||||:!!.!!:!!!! ||| !||||||.!!||||||.!!..!||||||||||| euGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuAr 274580 : TCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACG : 274636 103 : gLysAsnAspIleArgTyrCysIleGluHisIleGluThrAspTrpLysIleIleLys : 121 |!..!!.!!:|||||| !|||:!:||||||!!::!!|||||||||!:!|||:!:! gSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThr 274637 : CAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACC : 274693 122 : ArgMetGluAspGlnGlnValMetLeuLysSerAlaLysIleGlyArgIleIleSerG : 141 ||| !||||||||||||||||||||||||!:!||||||||||||||| !:!!:!! ArgProGluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaI 274694 : AGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGA : 274753 142 : lyCysIleAlaGlyPheMetHisIleGlyThrPheCysPheCysIleValLeuGlyVa : 160 !! ! !|||!.!||||||!!. !|||..!.!!|||!:!|||:!::!! !!.! ! lePheCysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPh 274754 : TCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTT : 274810 161 : lLeuLysArgThrIleLysIleGlyAsnAspSerMetGluMetTyrValLeuProPhe : 179 ! !! !!:!|||:!!:!!:!!||||||!!:!!!! :!!:!!:!!||||||! ! eThrMetGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCys 274811 : CACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGT : 274867 180 : ProThrTyrLys<-><->IleProValAspThrAsnProGlyHisGlyIleIleLeuS : 197 !.!!|||||| :!! !!|||||||||!:!||| !:!!! !|||:!!|||: LysAlaTyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValLeuA 274868 : AAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTG : 274927 198 : erLeuGlnTyrLeuThrSerTyrThrSerSerAlaThrValValIleAlaPheSerLe : 216 !!! !|||!:!:!!:!!.!!!:!! ! !!:!:!!!:!!.!||| !||||||||||| laSerGlnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLe 274928 : CCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCT : 274984 217 : uAlaThrValPheAlaTyrHisAlaIleGlyGlnLeuThrIleMetIleSerTrpIle : 235 ||||.!!||||||||| |||||| !|||||||||!:!:!::!!!!:! !|||||| uAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIle 274985 : TGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATC : 275041 236 : GlnGluPheValAsnGlnProGlnLysGlnAsnLysAsnIleArgIleAspGluIleS : 255 ||||||||||||!!. !!::! ! ||||||||||||::: .....!||||||. ThrGluPheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleG 275042 : ACCGAGTTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCG : 275101 256 : erIleIleIleGluHisHisLeuArgIleLeu{Se} >>>> Target Intron 1 : 266 !!:!::!!:!!|||||||||||||||:!!|||{||} 74 bp lyValValValGluHisHisLeuArgValLeu{Se}++ 275102 : GCGTGGTTGTCGAACATCATCTGAGGGTACTC{AG}gt.................... : 275138 267 : >>>> {r}PheLeuGluArgThrGluHisLeuLeuSerProIleCysPheMetGlu : 282 {|}|||:!!! !|||! !||| !!:!!:!!!:!! !||||||||||||||| ++{r}PheIleAlaArgIleGluAspValMetAsnArgIleCysPheMetGlu 275139 : .....ag{T}TTCATAGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAA : 275256 283 : MetPheLysAsnIleLeuSerIleCysMetPheSerTyrCysIleLeu : 298 :!!|||||| !! !|||..!!!:||||||.!!.!!|||! !|||||| LeuPheLysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleLeu 275257 : TTGTTCAAGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTCTC : 275306 vulgar: AmOr48 5 298 . KQ414889.1 274347 275306 + 737 M 178 534 G 0 6 M 82 246 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274348 275306 737 + . gene_id 2 ; sequence AmOr48 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274348 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274348 275135 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274348 275306 737 + . alignment_id 2 ; Query AmOr48 ; Align 274348 6 534 ; Align 274888 184 246 ; Align 275211 267 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 710 Query range: 0 -> 298 Target range: 266586 -> 267555 1 : MetAlaAspAspIleValAlaValGlnLysLysPheGlySerLeuAsnGluTyrSerI : 20 ||||||:!!!!: :!!!.!:!!:!! !!!..!...!||||||!:!!!:||||||: MetAlaAsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerL 266587 : ATGGCTAACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCC : 266644 21 : leGlnLeuAsnArgTrpLeuSerLysMetIleGlyValTrpProLeuProSerPheTh : 39 !:|||||||||||||||!!! !||| ||||||!.!||||||! ! !|||.!!|| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuTh 266645 : TGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCAC : 266701 40 : rSerLysPheGluLysIleMetThrLysIleLeuIlePhePheTyrTrpIleIleLeu : 58 |||||||.!!|||::!|||:!::!! ! !|||||| !!.!!! !!:: ! !:!! rSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIle 266702 : ATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATA : 266758 59 : LeuPheIleIleLeuAlaSerSerLeuHisPheLeuPheValLysGluAspIleValS : 78 ||||||! !:!!:!! !!!!!! !!!!|||.!!:!!.!.! ! ! |||..!||| !! LeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgT 266759 : CTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTA : 266818 79 : erLysLeuLysThrLeuGlyProIleSerTyrCysPheGlyGlyGlyPheAsnTyrAl : 97 !!|||:!!|||..!!!!||||||:!:|||:!!!! |||! !||||||.!!||||||.! hrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrTh 266819 : CGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACAC : 266875 98 : aValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleGluHisIleGluThrAsp : 116 !..!||||||||||||!..!!.!!:|||||| !|||:!!||||||!!::!!|||||| rThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAsp 266876 : CACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGAT : 266932 117 : TrpLysIleIleLysArgMetGluAspGlnGlnValMetLeuLysSerAlaLysIleG : 136 |||!:!|||:!:! ||| !||||||:!!|||||||||||||||!:!|||!:!|||| TrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleG 266933 : TGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCG : 266992 137 : lyArgIleIleSerGlyCysIleAlaGlyPheMetHisIleGlyThrPheCysPheCy : 155 ||||| !|||:!! !! ! !|||!.!||||||!!. !|||..!.!! !!!:!|| lyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCy 266993 : GTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTG : 267049 156 : sIleValLeuGlyValLeuLysArgThrIleLysIleGlyAsnAspSerMetGluMet : 174 |:!::!! !!.! !! !! !!:!|||:!::!!:!!||||||!!:!!!! ! :!: sValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleVal 267050 : TGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTA : 267106 175 : TyrValLeuProPheProThrTyrLys<-><->IleProValAspThrAsnProGlyH : 192 :!!:!!||||||! ! !!..!|||||| ||| !!|||||||||!:!||| !: HisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrA 267107 : CATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGA : 267166 193 : isGlyIleIleLeuSerLeuGlnTyrLeuThrSerTyrThrSerSerAlaThrValVa : 211 !!! !|||:!!||| !! !|||!:!:!!:!!.!!!:!! ! !!:!:!!!:!||||| snGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValVa 267167 : ACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGT : 267223 212 : lIleAlaPheSerLeuAlaThrValPheAlaTyrHisAlaIleGlyGlnLeuThrIle : 230 | !|||||||||||||||.!!||||||||| !|||||| !|||||||||!:!:!: lGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerVal 267224 : CGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTG : 267280 231 : MetIleSerTrpIleGlnGluPheValAsnGlnProGlnLysGlnAsnLysAsnIleA : 250 :!!!!:! !||||||:!!||||||||||||!:! !!::! ! ...|||||||||:!! LeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValC 267281 : CTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTT : 267340 251 : rgIleAspGluIleSerIleIleIleGluHisHisLeuArgIleLeu{Se} >>>> : 266 !!.!!|||:!!|||.!!:!::!!:!!|||||||||||||||:!!|||{||} ysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 267341 : GCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG}gt..... : 267392 267 : Target Intron 1 >>>> {r}PheLeuGluArgThrGluHisLeuLeuSerPro : 277 69 bp {|}|||:!!! !|||! !||| !:!!:!!||| ! ++{r}PheIleAlaArgIleGluSerValMetSerGlu 267393 : ....................ag{C}TTCATAGCACGTATCGAAAGTGTAATGAGCGAA : 267490 278 : IleCysPheMetGluMetPheLysAsnIleLeuSerIleCysMetPheSerTyrCysI : 297 |||||||||||||||:!!|||||| !! !:!!..!||||||:!!.!!||||||! !| IleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSerTyrTyrI 267491 : ATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCTATTATA : 267550 298 : leLeu : 298 ||||| leLeu 267551 : TCCTT : 267555 vulgar: AmOr48 0 298 . KQ414889.1 266586 267555 + 710 M 183 549 G 0 6 M 82 246 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266587 267555 710 + . gene_id 3 ; sequence AmOr48 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266587 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266587 267389 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267555 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266587 267555 710 + . alignment_id 3 ; Query AmOr48 ; Align 266587 1 549 ; Align 267142 184 246 ; Align 267460 267 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 552 Query range: 0 -> 266 Target range: 259721 -> 260525 1 : MetAlaAspAspIleValAlaValGlnLysLysPheGlySerLeuAsnGluTyrSerI : 20 |||.!!:!! ! ||| !|||:!!! !!..||| !|||! !!:!!!:||||||: MetThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerL 259722 : ATGACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCC : 259779 21 : leGlnLeuAsnArgTrpLeuSerLysMetIleGlyValTrpProLeuProSerPheTh : 39 !!|||!!!|||||||||!!! !||| !||||||!.!||||||! ! !!|||! !|| euGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 259780 : TCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCAC : 259836 40 : rSerLysPheGluLysIleMetThrLysIleLeuIlePhePheTyrTrpIleIleLeu : 58 |!!!!:!.!!|||||||||!!::!! ||||||||||||.!!! !!::! !! !:!! rThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIle 259837 : GACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATA : 259893 59 : LeuPheIleIleLeuAlaSerSerLeuHisPheLeuPheValLysGluAspIleValS : 78 ||| !!! !:!::!! !!!!! !||||||.!.|||.!!! !||||||..!:!: !! LeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrM 259894 : CTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACA : 259953 79 : erLysLeuLysThrLeuGlyProIleSerTyrCysPheGlyGlyGlyPheAsnTyrAl : 97 !||| !|||..!|||||||||:!!!!!:!!!! |||! !||| !!.!!||||||.! etLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrTh 259954 : TGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACAC : 260010 98 : aValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleGluHisIleGluThrAsp : 116 !..!|||||||||||| !..||||||! ! !|||:!:||||||:!:|||!.!||| rThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAsp 260011 : AACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGAT : 260067 117 : TrpLysIleIleLysArgMetGluAspGlnGlnValMetLeuLysSerAlaLysIleG : 136 |||!:!||||||! !||| !:!!||||||.!.|||||||||!:!! !||||||.!!| TrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheG 260068 : TGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCG : 260127 137 : lyArgIleIleSerGlyCysIleAlaGlyPheMetHisIleGlyThrPheCysPheCy : 155 ||||| !:!!:!!!.!! ! !|||!.!|||:!!!!. !|||..!.!.|||||||| lyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCy 260128 : GCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTG : 260184 156 : sIleValLeuGlyValLeuLysArgThrIleLysIleGlyAsnAspSerMetGluMet : 174 |:!:||| !! !:!! !! !..!..!|||:!!:!:||||||!!:!!!! ! :!: sLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal 260185 : TTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTT : 260241 175 : TyrValLeuProPheProThrTyrLys<-><->IleProValAspThrAsnProGlyH : 192 :!!:!!||||||! ! !!..!|||||| ||| !|||:!! !!:!||| !: HisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetA 260242 : CATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGA : 260301 193 : isGlyIleIleLeuSerLeuGlnTyrLeuThrSerTyrThrSerSerAlaThrValVa : 211 !!! !|||:!!||| !:!!|||!:!:!!:!!.!!!:!! ! !!:!:!!!:!..!|| snGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrVa 260302 : ACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGT : 260358 212 : lIleAlaPheSerLeuAlaThrValPheAlaTyrHisAlaIleGlyGlnLeuThrIle : 230 | ! !||||||||||||.!!|||.!..!! !|||||| !|||||||||!.!:!: lGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnVal 260359 : TGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTG : 260415 231 : MetIleSerTrpIleGlnGluPheValAsnGlnProGlnLysGlnAsnLysAsnIleA : 250 :!:!!:..!|||||| !|||||||||:!!:!! !!::!!!.::!!!.|||!!. !! LeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaP 260416 : CTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTC : 260475 251 : rgIleAspGluIleSerIleIleIleGluHisHisLeuArgIleLeuSer : 266 !.!! ! ||||||.!!:!:|||:!!||||||||||||||| !|||!!! roPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeuThr 260476 : CTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTCACG : 260525 vulgar: AmOr48 0 266 . KQ414889.1 259721 260525 + 552 M 183 549 G 0 6 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259722 260525 552 + . gene_id 4 ; sequence AmOr48 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259722 260525 . + . KQ414889.1 exonerate:protein2genome:local exon 259722 260525 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259722 260525 552 + . alignment_id 4 ; Query AmOr48 ; Align 259722 1 549 ; Align 260277 184 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 535 Query range: 0 -> 265 Target range: 256601 -> 257402 1 : MetAlaAspAspIleValAlaValGlnLysLysPheGlySerLeuAsnGluTyrSerI : 20 |||.!!:!!!!:.!!!.!!.!|||:!!! !!!.||| !|||! !!:!!!:||||||: MetThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerL 256602 : ATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTC : 256659 21 : leGlnLeuAsnArgTrpLeuSerLysMetIleGlyValTrpProLeuProSerPheTh : 39 !!|||||||||||||||!!! !||| ||||||!.!||||||! ! !!|||! !|| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 256660 : TCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCAC : 256716 40 : rSerLysPheGluLysIleMetThrLysIleLeuIlePhePheTyrTrpIleIleLeu : 58 |!!!! .!!|||::!! !:!::!!! :!!|||! !.!! !!! !!:: ! !:!! rThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIle 256717 : TACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATA : 256773 59 : LeuPheIleIleLeuAlaSerSerLeuHisPheLeuPheValLysGluAspIleValS : 78 ||||||! !:!::!! !!!!!! !|||||| ! !!!.!!! ! ! !!:..!.!! LeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrM 256774 : TTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAca : 256833 79 : erLysLeuLysThrLeuGlyProIleSerTyrCysPheGlyGlyGlyPheAsnTyrAl : 97 |||:::|||......||||||!!:|||:!!!! .!! !.!! !! !||||||.! etLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrTh 256834 : tgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACAC : 256890 98 : aValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleGluHisIleGluThrAsp : 116 !:!!|||||||||!:! !!!.|||||||||||||||:!!|||||||||||||||||| rLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAsp 256891 : GTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGAT : 256947 117 : TrpLysIleIleLysArgMetGluAspGlnGlnValMetLeuLysSerAlaLysIleG : 136 |||!:!!!::!:!:!||| !:!!|||||||||||||||:!!|||!:!|||!:!.!!| TrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheG 256948 : TGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCG : 257007 137 : lyArgIleIleSerGlyCysIleAlaGlyPheMetHisIleGlyThrPheCysPheCy : 155 ||||| !:!::!! !! ! !|||!.!.!!|||!!.! !|||...||||||||| lyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePh 257008 : GTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttctt : 257064 156 : sIleValLeuGlyValLeuLysArgThrIleLysIleGlyAsnAspSerMetGluMet : 174 ::: !! !!.!:!! !! !..!! !||| ! :!:||||||!!:!!!! ! :!! eValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleVal 257065 : cgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTG : 257121 175 : TyrValLeuProPheProThrTyrLys<-><->IleProValAspThrAsnProGlyH : 192 ||||||||| !! !!..!|||||| :!: !|||||| !!:!||| !: ArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrA 257122 : CGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGA : 257181 193 : isGlyIleIleLeuSerLeuGlnTyrLeuThrSerTyrThrSerSerAlaThrValVa : 211 !!! !|||:!::!!! !:!!||| !! !:!!||| !! !:!!!!!.!!!:!..!|| snGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrVa 257182 : ACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGT : 257238 212 : lIleAlaPheSerLeuAlaThrValPheAlaTyrHisAlaIleGlyGlnLeuThrIle : 230 |! ! !||||||||||||.!!||||||||| !|||||| !||||||||||||:!: lSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrVal 257239 : TAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTG : 257295 231 : MetIleSerTrpIleGlnGluPheValAsnGlnProGlnLysGlnAsnLysAsnIleA : 250 :!:!!:||||||||| !||||||||||||:!! !!::!!!.!::...|||...... LeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheP 257296 : CTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttc : 257355 251 : rgIleAspGluIleSerIleIleIleGluHisHisLeuArgIleLeu : 265 ..! ! :!!|||.!!:!:|||:!:|||||||||||||||:!:||| roPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu 257356 : ctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG : 257402 vulgar: AmOr48 0 265 . KQ414889.1 256601 257402 + 535 M 183 549 G 0 6 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256602 257402 535 + . gene_id 5 ; sequence AmOr48 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256602 257402 . + . KQ414889.1 exonerate:protein2genome:local exon 256602 257402 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256602 257402 535 + . alignment_id 5 ; Query AmOr48 ; Align 256602 1 549 ; Align 257157 184 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 445 Query range: 17 -> 389 Target range: 284523 -> 287222 18 : TyrSerIleGlnLeuAsnArgTrpLeuSerLysMetIleGlyValTrpProLeuProS : 37 ||||||:!!|||:!!|||||||||!!! !||| !|||||||||||||||||| ! TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 38 : erPheThrSerLysPheGluLysIleMetThrLysIleLeuIlePhePheTyrTrpIl : 56 !! !..!!!!! !!.|||||||||! :!! !:!!||| !!..!! !!! .! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 57 : eIleLeuLeuPheIleIleLeuAlaSerSerLeuHisPheLeuPheValLysGlu<-> : 75 !:!::!! !|||:!!:!::!! !!!!!:!!||| ! :!!.!!! !||| eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 76 : AspIleValSerLysLeuLysThrLeuGlyProIleSerTyrCysPheGlyGlyGlyP : 94 |||:!!! !!!!|||:!!|||! !:!!||||||:!:|||!:!|||.!. !!.!!.!. AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 95 : heAsnTyrAlaValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleGluHisIl : 113 !!!!.||| !:!!|||:!!! !||| ..! ! ||| !! ! |||:!::!! !!|| leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 114 : eGluThrAspTrpLysIleIle<-><-><->LysArgMetGluAspGlnGlnValMet : 129 |....!!||||||...:!!! !..::: |||::::::::::::||| eArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMet 284813 : TCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTG : 284869 130 : LeuLysSerAlaLysIleGlyArgIleIleSerGlyCysIleAlaGlyPheMetHisI : 149 ! ! ||||||!:!||||||||| !:!::!! !! ! !||||||||||||:!! ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrS 284870 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATT : 284929 150 : leGlyThrPheCysPheCysIleValLeuGlyValLeuLys<->ArgThrIleLysIl : 167 !||| !|||! !!:! !! |||:!! !:!!! !! ! |||||| ! || erGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIl 284930 : CCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCAT : 284986 168 : eGlyAsnAspSerMetGluMetTyrValLeuProPheProThrTyrLysIleProVal : 186 |! !|||!!:!!!:!!..! ! !.!!!!|||.!! ! ! ! :!! ! ! eAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 284987 : CGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCG : 285043 187 : AspThrAsnProGlyHisGlyIleIleLeuSerLeuGlnTyrLeuThrSerTyrThrS : 206 !|||!:!|||..! !! !|||:!:! !! !:!!|||! !|||.!!:!!!:!..!! ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValI 285044 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTA : 285103 207 : erSerAlaThrValValIleAlaPheSerLeuAlaThrValPheAlaTyrHisAlaIl : 225 !! !:!!..!..!||| !|||! !|||||||||.!!||||||!.! |||!.! leTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCy 285104 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTG : 285160 226 : eGlyGlnLeuThrIleMetIleSerTrpIleGlnGluPheValAsnGlnProGln<-> : 244 !||||||!!!! !|||:!::!:!!! !:!:.!.:!!.!!|||:!! ! !:!! sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLysGly 285161 : TGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGG : 285217 245 : LysGlnAsnLysAsnIleArgIleAspGluIleSerIleIleIleGluHisHisLeuA : 263 !:!:!!... !!:!! !.! !.!...!:!:.!! !||||||||||||||||||! ArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuL 285218 : AGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGA : 285277 264 : rgIleLeu{Se} >>>> Target Intron 1 >>>> {r}PheLeuGluArgTh : 271 :!||||||{.!} 1494 bp {!}.!.||| !|| ysIleLeu{Gl}++ -+{y}IleLeu---PheTh 285278 : AGATACTG{GG}gt.........................gg{G}ATATTA---TTTAC : 286792 272 : rGluHisLeuLeuSerProIleCysPheMetGluMetPheLysAsnIleLeuSerIle : 290 |!!: ! ! !..! !:!:|||!:! .!.! ! ! ! |||:!!:!!.!! rAspGlyAsnArgAspAspLeuCysTyrTyrHisThrValMetAlaIleIleAlaPhe 286793 : TGACGGTAACAGAGACGACTTGTGTTATTACCATACTGTAATGGCAATAATTGCATTC : 286849 291 : CysMetPheSerTyrCysIleLeuAlaGluTrpSerGluArgAspIleArgValLeuG : 310 !|||!:!|||! ! :!!!!! !||||||..!:!!!!!!!:! !! !! ! ! ValMetTyrSerLeuSerValPhe***GluTrpGluGlnSerGluThrIleGlyThrI 286850 : GTCATGTACTCGTTGTCAGTTTTCTAGGAATGGGAGCAAAGTGAAACTATAGGAACGA : 286909 311 : lyIleTyrThrPheAlaValMetAsnValIleLeuSerThrPheLeuIleCysTyrIl : 329 !! ||| ! !:!!:!:::! !!! !!!!:!..!|||:!!:!!|||||||| leThrTyrCysThrLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIl 286910 : TCACGTATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACAT : 286966 330 : eGlyGluValLeuThrGluArg >>>> Target Intron 2 >>>> CysLysG : 339 |||||||:!!|||:!!|||!:: 74 bp ||| !: eGlyGluIleLeuSerGluGln++ ++CysLeuL 286967 : CGGTGAAATTCTCTCCGAACaggt.........................agtGCTTAA : 287070 340 : luIleGlyAsnMetValTyrMetThrAsnTrpTyrHisLeuProAspLysAspIlePh : 358 !!:!!||| ..!||||||! !:!!||||||!.!||||||! ||| ! ysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGl 287071 : AAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCA : 287127 359 : eAsnLeuIleMetIleIleValArgSerGlyValGluTyrLysMetThrAlaGlyLys : 377 ..!||||||:!!|||.!!!.! !|||..! !... |||:!:|||||||||||| nGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLys 287128 : AGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAG : 287184 378 : IleIleAspIleSerValIleThrPheGlyAsnIle : 389 |||||||||:!!|||:!!! !!:!||| !!!:!:!: IleIleAspLeuSerLeuSerSerPheCysSerVal 287185 : ATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTG : 287222 vulgar: AmOr48 17 389 . KQ414889.1 284523 287222 + 445 M 57 171 G 0 3 M 46 138 G 0 9 M 42 126 G 0 3 M 81 243 G 0 3 M 22 66 S 0 2 5 0 2 I 0 1490 3 0 2 S 1 1 M 2 6 G 1 0 M 67 201 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 287222 445 + . gene_id 6 ; sequence AmOr48 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284524 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 285287 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286780 286781 . + . intron_id 0 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 286782 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286782 286989 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287222 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287222 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284524 287222 445 + . alignment_id 6 ; Query AmOr48 ; Align 284524 18 171 ; Align 284698 75 138 ; Align 284845 121 126 ; Align 284974 163 243 ; Align 285220 244 66 ; Align 286783 267 6 ; Align 286789 270 201 ; Align 287064 337 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 415 Query range: 2 -> 265 Target range: 236807 -> 237596 3 : AspAspIleValAlaValGlnLysLysPheGlySerLeuAsnGluTyrSerIleGlnL : 22 ||| ! ! !|||!.!..!:!!! !!..!. !:!! !!:!!!:||||||:!!|||! AspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnT 236808 : GACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGT : 236865 23 : euAsnArgTrpLeuSerLysMetIleGlyValTrpProLeuProSerPheThrSerLy : 41 !||||||||| !! !|||! ||||||..!||| |||..!|||:!!|||!! rpAsnArgTrpAlaMetLysSerIleGlyThrTrp------ProGlnPheSerSerAs 236866 : GGAATCGATGGGCGATGAAAAGCATAGGCACATGG------CCACAGTTCTCGTCGAA : 236916 42 : sPheGluLysIleMetThrLysIleLeuIlePhePheTyrTrpIleIleLeuLeuPhe : 60 ..!!|||!:!! !!!::!!::!||||||! ! ! .!!! !!::! ! !:!!|||||| nLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPhe 236917 : CCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTC : 236973 61 : IleIleLeuAlaSerSerLeuHisPheLeuPheValLysGluAspIleValSerLysL : 80 |||:!! !!!!!|||||||||.!.:!!.!.! !|||! ! !.!! !!!!|||: SerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysV 236974 : TCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAG : 237033 81 : euLysThrLeuGlyProIleSerTyrCysPheGlyGlyGlyPheAsnTyrAlaValLe : 99 !!|||! !|||||| !!:!:|||:!!!! ! ! !! !.!!!:!|||.!!:!!|| alLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLe 237034 : TGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCT : 237090 100 : uLeuLeuArgLysAsnAspIleArgTyrCysIleGluHisIleGluThrAspTrpLys : 118 ||||||||||:::!!. !||||||:!!! !.!!.!.|||!!:||||||||||||!:! uLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArg 237091 : GTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGA : 237147 119 : IleIleLysArgMetGluAspGlnGlnValMetLeuLysSerAlaLysIleGlyArgI : 138 ! ! ||| ||| ::::::||||||||||||! !||||||.!!.!!||| ThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgT 237148 : ACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGAT : 237207 139 : leIleSerGlyCysIleAlaGlyPheMetHisIleGlyThrPheCysPheCysIleVa : 157 ! :!! !! ! !.!! !|||!!:||| !|||! !.!! ! !:!|||:!!:! yrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMe 237208 : ACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTAT : 237264 158 : lLeuGlyValLeuLysArgThrIleLysIleGlyAsnAspSerMetGluMetTyrVal : 176 ! !!.! ! !! !! !..!:!! !:!!|||||| ! !!!! ! :!! !||| tThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLeuArgVal 237265 : GACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGCGTG : 237321 177 : LeuProPheProThrTyrLys<-><->IleProValAspThrAsnProGlyHisGlyI : 194 ||||||!!.|||! !|||||| :!!||||||||||||||| !! !:!!! !| LeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnAspI 237322 : CTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGACA : 237381 195 : leIleLeuSerLeuGlnTyrLeuThrSerTyrThrSerSerAlaThrValValIleAl : 213 ||:!!:!!! !! !|||!:!|||:!!.!!!:!! !:!!!:! !!:!!.!:!!! !!. leValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSerVa 237382 : TCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAGTGT : 237438 214 : aPheSerLeuAlaThrValPheAlaTyrHisAlaIleGlyGlnLeuThrIleMetIle : 232 !.!.||||||.!!!:!!.!.!..!!! |||||| !|||||||||!:!:!::!:!!: lIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValValMet 237439 : TATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTTATG : 237495 233 : SerTrpIleGlnGluPheValAsnGlnProGlnLysGlnAsnLysAsnIleArgIleA : 252 ! !! !|||:!!!!:||||||!:!:!! !!::!:::::!...|||:!! !!.!.!!| LeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAspHisPheA 237496 : TTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATCATTTCG : 237555 253 : spGluIleSerIleIleIleGluHisHisLeuArgIleLeu : 265 |||||||| !!! !|||:!:|||.!.|||||||||:!:||| spGluIleProThrIleValGluGluHisLeuArgValLeu 237556 : ACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTG : 237596 vulgar: AmOr48 2 265 . KQ414889.1 236807 237596 + 415 M 31 93 G 2 0 M 148 444 G 0 6 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236808 237596 415 + . gene_id 7 ; sequence AmOr48 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236808 237596 . + . KQ414889.1 exonerate:protein2genome:local exon 236808 237596 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236808 237596 415 + . alignment_id 7 ; Query AmOr48 ; Align 236808 3 93 ; Align 236901 36 444 ; Align 237351 184 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 389 Query range: 16 -> 268 Target range: 232456 -> 233215 17 : GluTyrSerIleGlnLeuAsnArgTrpLeuSerLysMetIleGlyValTrpProLeuP : 36 |||||||||||||||:!!|||||||||!!! !! ! !!!:|||!.!||||||! ! GluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgV 232457 : GAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTG : 232514 37 : roSerPheThrSerLysPheGluLysIleMetThrLysIleLeuIlePhePheTyrTr : 55 !!!! ||||||!:! !:!!:!!:!!:!:.!!|||:!:|||! !.!! !! ! alThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHi 232515 : TTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCA : 232571 56 : pIleIleLeuLeuPheIleIleLeuAlaSerSerLeuHisPheLeuPheValLysGlu : 74 !:!::!!:!!! ! |||:!! !!!!!! !||| !.!!||||||! ! ! ! sSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThr 232572 : TTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACG : 232628 75 : AspIleValSerLysLeuLysThrLeuGlyProIleSerTyrCysPheGlyGlyGlyP : 94 ..!:!!! !..!!:!:!!|||:!!:!!||||||!!:|||:!!! !.!. !|||! !! SerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluL 232629 : AGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAAT : 232688 95 : heAsnTyrAlaValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleGluHisIl : 113 !.||||||..! !|||||| !!:! !|||||||||! !||||||:!:|||!!.:! euAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnVa 232689 : TGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGT : 232745 114 : eGluThrAspTrpLysIleIleLysArgMetGluAspGlnGlnValMetLeuLysSer : 132 ::!! !||||||::!! !:!!|||!:! ! !!!::.!.:!!|||||||||!:! lLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsn 232746 : GAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAAC : 232802 133 : AlaLysIleGlyArgIleIleSerGlyCysIleAlaGlyPheMetHisIleGlyThrP : 152 ||||||:!!|||||| |||:!! !! ! !||| !! !||||||! !|||..! AlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValG 232803 : GCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCG : 232862 153 : heCysPheCysIleValLeuGlyValLeuLysArgThrIleLysIleGlyAsnAspSe : 171 !! ! ! |||||| !|||:!!! !! !!!!|||.!! ! :!:||||||!!:|| lySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSe 232863 : GCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAG : 232919 172 : rMetGluMetTyrValLeuProPheProThrTyrLysIleProValAspThr<-><-> : 189 | ..!|||||| !||||||! ! !! !|||! !! ! !:!!|||||| rTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPhe 232920 : TTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTC : 232976 190 : AsnProGlyHisGlyIleIleLeuSerLeuGlnTyrLeuThrSerTyrThrSerSerA : 208 !:!||| !:!!! !|||!!:!!! !||||||! !|||:!!.!!!:!! ! !!:!: SerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnS 232977 : AGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACT : 233036 209 : laThrValValIleAlaPheSerLeuAlaThrValPheAlaTyrHisAlaIleGlyGl : 227 !!..!..!||| !|||! !.!!|||!.!.!!|||.!.||| |||||| !||||| erValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGl 233037 : CCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACA : 233093 228 : nLeuThrIleMetIleSerTrpIleGlnGluPheValAsnGlnProGlnLysGlnAsn : 246 ||||!.!:!::!!!!:||| :!:.!.!!:!!.|||:!! !!:!! !|||.!. nLeuAsnValValMetSerLysLeuAspAspLeuValAsp---AlaLysGlyGlnGlu 233094 : GCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGAC---GCGAAAGGGCAGGAG : 233147 247 : LysAsnIleArgIleAspGluIleSerIleIleIleGluHisHisLeuArgIleLeuS : 266 :!!!..:!! ! :!!:!!.!!.!!|||:!:|||||||||||||||! !|||! GluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeuA 233148 : GAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTAA : 233207 267 : erPheLeu : 268 !!!:!||| rgTyrLeu 233208 : GGTATTTG : 233215 vulgar: AmOr48 16 268 . KQ414889.1 232456 233215 + 389 M 172 516 G 0 6 M 52 156 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232457 233215 389 + . gene_id 8 ; sequence AmOr48 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232457 233215 . + . KQ414889.1 exonerate:protein2genome:local exon 232457 233215 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 232457 233215 389 + . alignment_id 8 ; Query AmOr48 ; Align 232457 17 516 ; Align 232979 189 156 ; Align 233135 242 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 314 Query range: 5 -> 265 Target range: 226894 -> 227677 6 : ValAlaValGlnLysLysPheGlySerLeuAsnGluTyrSerIleGlnLeuAsnArgT : 25 :!!|||..!:!!!!. ! !:! !..!! ! .!. ||||||||||||||||||| LeuAlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgT 226895 : CTCGCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTT : 226952 26 : rpLeuSerLysMetIleGlyValTrpProLeuProSerPheThrSerLysPheGluLy : 44 |||||! !||| :!!|||:!!||||||! ! !! !! !:!|||::!.!.! !!: rpLeuLeuLysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGlyAr 226953 : GGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAG : 227009 45 : sIleMetThrLysIleLeuIlePhePheTyrTrpIleIleLeuLeuPheIleIleLeu : 63 ! !.!.:!! !:!::!! !|||.!!! !!:: :!::!! !||| :!::!! gCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuVal 227010 : ATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTC : 227066 64 : AlaSerSerLeuHisPheLeuPheValLysGluAspIleValSerLysLeuLysThrL : 83 :!!|||.!!|||:!! ! :!!.!.! ! !:!!! ! ! !!:!! !||||||! !: SerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetI 227067 : TCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGA : 227126 84 : euGlyProIleSerTyrCysPheGlyGlyGlyPheAsnTyrAlaValLeuLeuLeuAr : 102 !!||||||!!:|||!:!! ! !..! !.!!!!.|||:!!:!!||| !!!!!. leGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHi 227127 : TCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCA : 227183 103 : gLysAsnAspIleArgTyrCysIleGluHisIleGluThrAspTrpLysIleIleLys : 121 !:!!:!!||||||! ! ! |||:!!|||!..|||:!! !|||||||||! !|||!:! sGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArg 227184 : CGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGA : 227240 122 : ArgMetGluAspGlnGlnValMetLeuLysSerAlaLysIleGlyArgIleIleSerG : 141 !:!!||||||::!.!.||||||:!!! !! !||| ! !||||||! !:!:! ! TyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleT 227241 : TACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCA : 227300 142 : lyCysIleAlaGlyPheMetHisIleGlyThrPheCysPheCysIleValLeuGlyVa : 160 ! ! !.!! !|||:!: !! ... ||| ||||||:!! !:! hrIleCysThrPhePheValPheSerSerPheValPhePheTyrIleValValProIl 227301 : CTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTAT : 227357 161 : lLeuLysArgThrIleLysIleGlyAsnAspSerMetGluMetTyrValLeuProPhe : 179 ! ! !!!:!:!! !! ! !:!!! !:! ... ! !:!!|||||| eAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPhe 227358 : CAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTT : 227414 180 : ProThrTyrLysIleProValAspThr<-><->AsnProGlyHisGlyIleIleLeuS : 197 ||| ! |||||| !!.!|||..! !:!||| !:!!! !|||.!!!!!| ProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheS 227415 : CCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTT : 227474 198 : erLeuGlnTyrLeuThrSerTyrThrSerSerAlaThrValValIleAlaPheSerLe : 216 ||:!!|||!:!:!!|||.!! !..!! ! !!.!..!..! ! !|||! !|||:! erValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMe 227475 : CGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTAT : 227531 217 : uAlaThrValPheAlaTyrHisAlaIleGlyGlnLeuThrIleMetIleSerTrpIle : 235 !|||.!!:!!.!!||| !|||||| !||||||:!! !:!::!!:!:||||||:!: tAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeu 227532 : GGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTG : 227588 236 : GlnGluPheValAsnGlnProGlnLysGlnAsnLysAsnIleArgIleAspGluIleS : 255 !.!.!!.:!!:!! ! ! ! ..!!:!|||!..:!: ! |||..!|||: GlyHisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAsp---AspArgIleA 227589 : GGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGAT---GATAGAATCG : 227645 256 : erIleIleIleGluHisHisLeuArgIleLeu : 265 !!! !|||:!! ||||||:!!||||||||| laSerIleValThrHisHisValArgIleLeu 227646 : CTAGCATCGTCACTCACCACGTTCGAATATTG : 227677 vulgar: AmOr48 5 265 . KQ414889.1 226894 227677 + 314 M 183 549 G 0 6 M 62 186 G 1 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226895 227677 314 + . gene_id 9 ; sequence AmOr48 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226895 227677 . + . KQ414889.1 exonerate:protein2genome:local exon 226895 227677 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226895 227677 314 + . alignment_id 9 ; Query AmOr48 ; Align 226895 6 549 ; Align 227450 189 186 ; Align 227636 252 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 308 Query range: 299 -> 404 Target range: 277371 -> 277842 300 : GluTrpSerGluArgAspIleArgValLeuGlyIleTyrThrPheAlaValMetAsnV : 319 |||||||||!!:!!!|||:!!!:!..!:!! !! :!! !.!. !:!!!!:::!: GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 320 : alIleLeuSerThrPheLeuIleCysTyrIleGlyGluValLeuThrGluArg >>> : 337 !: ...::: ||| !:!!|||||||||||||||:!!|||||||||!:! etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 338 : > Target Intron 1 >>>> CysLysGluIleGlyAsnMetValTyrMetThrA : 348 72 bp ||||||:!!:!!|||.!.:!!||||||||||||| ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 349 : snTrpTyrHisLeuProAspLysAspIlePheAsnLeuIleMetIleIleValArgSe : 367 ||||||||:!!||||||||||||||||||.!!||||||:!!:!:|||||| !||||| snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 368 : rGlyValGluTyrLysMetThrAlaGlyLysIleIleAspIleSerValIleThrPhe : 386 |.!!::: |||:::||||||||||||:::|||...:::|||||| !|||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 387 : GlyAsn >>>> Target Intron 2 >>>> IleValLysThrValPheValTy : 396 |||:!! 84 bp :!!:!!||||||..!|||...|| GlyAsp++ ++ValIleLysThrThrPheAlaTy 277703 : GGCGATgt.........................agGTAATAAAAACCACTTTCgcgta : 277816 397 : rLeuAsnIleLeuArgGlnMetThr : 404 |||||||||||||||||||! !||| rLeuAsnIleLeuArgGlnThrThr 277817 : tttaaatattctacgCCAAACGACG : 277842 vulgar: AmOr48 299 404 . KQ414889.1 277371 277842 + 308 M 37 111 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277842 308 + . gene_id 10 ; sequence AmOr48 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277842 308 + . alignment_id 10 ; Query AmOr48 ; Align 277372 300 111 ; Align 277555 337 156 ; Align 277795 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 288 Query range: 17 -> 265 Target range: 278576 -> 279338 18 : TyrSerIleGlnLeuAsnArgTrpLeuSerLysMetIleGlyValTrpProLeuProS : 37 ||||||:!!|||:!!|||||||||!!! !||| !|||||||||||||||||| ! TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 38 : erPheThrSerLysPheGluLysIleMetThrLysIleLeuIlePhePheTyrTrpIl : 56 !! !..!!!!! !!.|||||||||! :!! !:!!||| !!..!! !!! .! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 57 : eIleLeuLeuPheIleIleLeuAlaSerSerLeuHisPheLeuPheValLysGlu<-> : 75 !:!::!! !|||:!!:!::!! !!!!!:!!||| ! :!!.!!! !||| eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 76 : AspIleValSerLysLeuLysThrLeuGlyProIleSerTyrCysPheGlyGlyGlyP : 94 |||:!!! !!!!|||:!!|||! !:!!||||||:!!|||!:!||| !!.! !. AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 95 : heAsnTyrAlaValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleGluHisIl : 113 !!!!.||| !:!!|||:!!! !||| ..! ! ||| !! ! |||:!:.!. !!|| leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 114 : eGluThrAspTrpLysIle<-><-><->IleLysArgMetGluAspGlnGlnValMet : 129 |...|||||||||...:!! !:::::: |||::::::::::::||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 130 : LeuLysSerAlaLysIleGlyArgIleIleSerGlyCysIleAlaGlyPheMetHisI : 149 ! ! ||||||!:!||||||||| !:!::!! !! !! !||||||||||||:!! ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 150 : leGlyThrPheCysPheCysIleValLeuGlyValLeuLys<->ArgThrIleLysIl : 167 !||| ! !!! !!:! ! !|||:!! !:!!!!! ! |||||| ! || erGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIl 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCAT : 279039 168 : eGlyAsnAspSerMetGluMetTyrValLeuProPheProThrTyrLysIleProVal : 186 |! !|||!!:!!!:!!..! ! !.!!!!|||.!! ! ! ! :!! ! ! eAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 279040 : CGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCG : 279096 187 : AspThrAsnProGlyHisGlyIleIleLeuSerLeuGlnTyrLeuThrSerTyrThrS : 206 !|||!:!|||..! !! !|||:!:! !! !:!!|||! !|||.!!:!!!:!..!! ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValL 279097 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTT : 279156 207 : erSerAlaThrValValIleAlaPheSerLeuAlaThrValPheAlaTyrHisAlaIl : 225 !! !:!!..!..!||| !|||! !|||||| !.!!||||||!.! |||!.! euTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCy 279157 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTG : 279213 226 : eGlyGlnLeuThrIleMetIleSerTrpIleGlnGluPheValAsnGlnProGln<-> : 244 !||||||!!!! !|||:!::!:!!! !:!:.!.:!!.!!:!!:!! ! !:!! sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLysGly 279214 : TGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGG : 279270 245 : LysGlnAsnLysAsnIleArgIleAspGluIleSerIleIleIleGluHisHisLeuA : 263 !:!:!!!:! !!:!! !.! !.!...!:!:.!! !||||||||||||||||||! ArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuL 279271 : AGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGA : 279330 264 : rgIleLeu : 265 :!|||||| ysIleLeu 279331 : AGATACTG : 279338 vulgar: AmOr48 17 265 . KQ414889.1 278576 279338 + 288 M 57 171 G 0 3 M 45 135 G 0 9 M 43 129 G 0 3 M 81 243 G 0 3 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 279338 288 + . gene_id 11 ; sequence AmOr48 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278577 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279338 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278577 279338 288 + . alignment_id 11 ; Query AmOr48 ; Align 278577 18 171 ; Align 278751 75 135 ; Align 278895 120 129 ; Align 279027 163 243 ; Align 279273 244 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 230 Query range: 299 -> 392 Target range: 238411 -> 238796 300 : GluTrpSerGluArgAspIleArgValLeuGlyIleTyrThrPheAlaValMetAsnV : 319 ||||||:!!|||!!!||| !!:!:!!||| !! ||| ! ! |||:!!:!: !: GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheValAlaLeuValAlaI 238412 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTGTAGCACTCGTTGCTA : 238469 320 : alIleLeuSerThrPheLeuIleCysTyrIleGlyGluValLeuThrGluArg >>> : 337 !!:!!! !!:!||||||:!!:!!|||||||||.!!||| !|||||||||!:! leValSerAsnThrPheIleLeuCysTyrIleSerGluArgLeuThrGluGln++ 238470 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGAAAGGCTGACAGAACAGgt... : 238525 338 : > Target Intron 1 >>>> CysLysGluIleGlyAsnMetValTyrMetThrA : 348 106 bp ||| !:!!:!!|||.!.:!!||||||||||||: ++CysLeuLysValGlyGluValValTyrMetThrA 238526 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 238662 349 : snTrpTyrHisLeuProAspLysAspIlePheAsnLeuIleMetIleIleValArgSe : 367 !!||||||:!!||||||.!.!:! |||.!!:!!||||||:!!|||||| !||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSe 238663 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATC : 238719 368 : rGlyValGluTyrLysMetThrAlaGlyLysIleIleAspIleSerValIleThrPhe : 386 |..!|||! !|||:!:||||||||||||:!!:!! !!!!:|||:!! !|||||| rAsnValValValLysValThrAlaGlyLysValLeuHisMetSerLeuTyrThrPhe 238720 : GAACGTGGTCGTTAAAGTCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTC : 238776 387 : GlyAsnIleValLysThr : 392 |||:!!:!! !:!!||| GlyAspValSerGluThr 238777 : GGCGATGTAAGTGAAACT : 238796 vulgar: AmOr48 299 392 . KQ414889.1 238411 238796 + 230 M 37 111 5 0 2 I 0 102 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238412 238796 230 + . gene_id 12 ; sequence AmOr48 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 238412 238522 . + . KQ414889.1 exonerate:protein2genome:local exon 238412 238522 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238523 238524 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238523 238628 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 238627 238628 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238629 238796 . + . KQ414889.1 exonerate:protein2genome:local exon 238629 238796 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238412 238796 230 + . alignment_id 12 ; Query AmOr48 ; Align 238412 300 111 ; Align 238629 337 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 225 Query range: 299 -> 395 Target range: 254071 -> 254451 300 : GluTrpSerGluArgAspIleArgValLeuGlyIleTyrThrPheAlaValMetAsnV : 319 ||||||!!!|||!!!||| !!:!:!!||| !! |||! ! ! .!!:!!:!: !| GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaV 254072 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTG : 254129 320 : alIleLeuSerThrPheLeuIleCysTyrIleGlyGluValLeuThrGluArg >>> : 337 ||:!! :::|||||||||||||||||||||.!!!!: !|||||||||!:! alValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 254130 : TTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt... : 254185 338 : > Target Intron 1 >>>> CysLysGluIleGlyAsnMetValTyrMetThrA : 348 92 bp ||| !:!!:!!|||.!.:!!||||||||||||: ++CysLeuLysValGlyGluValValTyrMetThrA 254186 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 254308 349 : snTrpTyrHisLeuProAspLysAspIlePheAsnLeuIleMetIleIleValArgSe : 367 !!||||||:!!||||||.!.!:! |||.!!:!!||||||:!!||||||..!||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSe 254309 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATC : 254365 368 : rGlyValGluTyrLysMetThrAlaGlyLysIleIleAspIleSerValIleThrPhe : 386 |..!|||! !:!!!!:|||||||||||||||... :::|||:!! !|||||| rAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPhe 254366 : GAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTC : 254422 387 : GlyAsnIleValLysThrValPheVal : 395 |||:!!:!! !:!!||| !.!!||| GlyAspValSerGluThrAsnLeuVal 254423 : GGCGATGTAAGTGAAACTAATCTTGTT : 254451 vulgar: AmOr48 299 395 . KQ414889.1 254071 254451 + 225 M 37 111 5 0 2 I 0 88 3 0 2 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254072 254451 225 + . gene_id 13 ; sequence AmOr48 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254072 254182 . + . KQ414889.1 exonerate:protein2genome:local exon 254072 254182 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254183 254184 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254183 254274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254273 254274 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254275 254451 . + . KQ414889.1 exonerate:protein2genome:local exon 254275 254451 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254072 254451 225 + . alignment_id 13 ; Query AmOr48 ; Align 254072 300 111 ; Align 254275 337 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 285 -> 366 Target range: 261691 -> 262015 286 : AsnIleLeuSerIleCysMetPheSerTyrCysIleLeuAlaGluTrpSerGluArgA : 305 ||| !:!!! !|||! !.!. ::: :::||| ||||||:!!|||!:!| AsnCysValIleIlePhePhe***TyrPhePheLeuLeuGlnGluTrpAlaGluGlnA 261692 : AATTGTGTAATAATCTTTTTctgatatttctttcttttgcagGAATGGGCTGAGCAAG : 261749 306 : spIleArgValLeuGlyIleTyrThrPheAlaValMetAsnValIleLeuSerThrPh : 324 |||||!:! !|||..!! ||| !.!. !:!!!!: :!! !!!!!:!..!|| spIleGlnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPh 261750 : ATATACAAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATT : 261806 325 : eLeuIleCysTyrIleGlyGluValLeuThrGluArg >>>> Target Intron : 337 |:!!||||||||||||||||||:!!|||||||||!:! 81 bp eIleIleCysTyrIleGlyGluIleLeuThrGluGln++ 261807 : TATAATCTGTTACATCGGTGAAATACTAACGGAACAGgt................... : 261847 338 : 1 >>>> CysLysGluIleGlyAsnMetValTyrMetThrAsnTrpTyrHisLeuPr : 353 |||..!:!!:!!|||:!!:!:|||||||||||||||||||||:!!||||| ++CysSerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuPr 261848 : ......agTGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACC : 261974 354 : oAspLysAspIlePheAsnLeuIleMetIleIleValArg : 366 |||||||..!|||.!!:!!||||||:!!||||||!.!||| oAspLysSerIleLeuAspLeuIleLeuIleIleAlaArg 261975 : TGATAAAAGTATCCTTGATTTGATTTTGATCATTGCACGA : 262015 vulgar: AmOr48 285 366 . KQ414889.1 261691 262015 + 205 M 51 153 5 0 2 I 0 77 3 0 2 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261692 262015 205 + . gene_id 14 ; sequence AmOr48 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 261692 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261692 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262015 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262015 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 261692 262015 205 + . alignment_id 14 ; Query AmOr48 ; Align 261692 286 153 ; Align 261926 337 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 299 -> 389 Target range: 305100 -> 305783 300 : GluTrpSerGluArgAspIleArgValLeuGlyIleTyrThrPheAlaValMetAsnV : 319 !!:|||..!...!!!:!!! ! ! !||| !! !|||||| ! !:!!!!:::!| AspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValLeuLeuIleSerV 305101 : GATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGTTACTGATATCTG : 305158 320 : alIleLeuSerThrPheLeuIleCysTyrIleGlyGluValLeuThrGluArg >>> : 337 ||! !!!!!:!! !|||:!!:!!|||||||||||||||:!!|||! !|||!:! alThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMetGluLys++ 305159 : TAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTATGGAAAAGgt... : 305214 338 : > Target Intron 1 >>>> CysLysGluIleGlyAsnMetValTyrMetThrA : 348 413 bp !!!.....:!!||| !!:!|||! !! ++SerSerSerValGlyLeuSerCysPheMetIleS 305215 : ......................agAGCAGTAGCGTTGGATTATCCTGTTTTATGATCA : 305658 349 : snTrpTyrHisLeuProAspLysAspIlePheAsnLeuIleMetIleIleValArgSe : 367 :!||||||||||||||| !||| ||| !..!||||||:!:||||||!.!! !|| erTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleLeuIleIleAlaMetSe 305659 : GTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTTTAATCATTGCCATGTC : 305715 368 : rGlyValGluTyrLysMetThrAlaGlyLysIleIleAspIleSerValIleThrPhe : 386 |.!! ! ! !|||!!:!:!|||||||||:!!:!!|||:!!|||:!! !|||||| rSerAsnProAlaLysIleSerAlaGlyLysValValAspLeuSerLeuSerThrPhe 305716 : AAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTATCTTTATCCACATTT : 305772 387 : GlyAsnIle : 389 ||||||:!: GlyAsnVal 305773 : GGAAACGTG : 305783 vulgar: AmOr48 299 389 . KQ414889.1 305100 305783 + 204 M 37 111 5 0 2 I 0 409 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305101 305783 204 + . gene_id 15 ; sequence AmOr48 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305101 305783 204 + . alignment_id 15 ; Query AmOr48 ; Align 305101 300 111 ; Align 305625 337 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 199 Query range: 277 -> 389 Target range: 280025 -> 280435 278 : IleCysPheMetGluMetPheLysAsnIleLeuSerIleCysMetPheSerTyrCysI : 297 :!!|||!:!.!..!.!!: ! ! ! ! !:!!:!!.!! !|||!:!|||! ! : LeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerLeuSerV 280026 : TTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGTTGTCAG : 280083 298 : leLeuAlaGluTrpSerGluArgAspIleArgValLeuGlyIleTyrThrPheAlaVa : 316 !!!!! !||||||..!:!!!.!||| !! !! ! ! !! ||| !.!. !:! alPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLe 280084 : TTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCT : 280140 317 : lMetAsnValIleLeuSerThrPheLeuIleCysTyrIleGlyGluValLeuThrGlu : 335 !!!:::!:!!! !!!!:!..!|||:!!:!!|||||||||||||||:!!|||:!!||| uIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGlu 280141 : CATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAA : 280197 336 : Arg >>>> Target Intron 1 >>>> CysLysGluIleGlyAsnMetValTy : 345 !:: 74 bp ||| !:!!:!!||| ..!|| Gln++ ++CysLeuLysValGlyValSerThrTy 280198 : Caggt.........................agTGCTTAAAAGTCGGCGTGTCAACTTA : 280301 346 : rMetThrAsnTrpTyrHisLeuProAspLysAspIlePheAsnLeuIleMetIleIle : 364 ||||! !:!!||||||!.!||||||! ||| ! ! ..!||||||:!!|||.!! rMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePhe 280302 : CATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTC : 280358 365 : ValArgSerGlyValGluTyrLysMetThrAlaGlyLysIleIleAspIleSerValI : 384 !.! !|||..! !... |||:!:|||||||||||||||||||||:!!|||:!!! AlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuS 280359 : GCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAA : 280418 385 : leThrPheGlyAsnIle : 389 !!:!||| !!!:!:!: erSerPheCysSerVal 280419 : GCAGCTTCTGCAGCGTG : 280435 vulgar: AmOr48 277 389 . KQ414889.1 280025 280435 + 199 M 59 177 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280026 280435 199 + . gene_id 16 ; sequence AmOr48 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280026 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280026 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280435 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280435 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280026 280435 199 + . alignment_id 16 ; Query AmOr48 ; Align 280026 278 177 ; Align 280277 337 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 194 Query range: 18 -> 187 Target range: 294690 -> 295197 19 : SerIleGlnLeuAsnArgTrpLeuSerLysMetIleGlyValTrpProLeu<->ProS : 37 |||:!!:!!! ! !||| !!|||! !||| !||||||:!!||||||||| !| SerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrS 294691 : AGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACA : 294748 38 : erPheThrSerLysPheGluLysIleMetThrLysIleLeuIlePhePheTyrTrpIl : 56 || !|||||||||.!..!.|||:!!:!::!!! !||||||||| !::! ! !:! erHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLe 294749 : GTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTT : 294805 57 : eIleLeuLeuPheIleIleLeuAlaSerSerLeuHisPheLeuPheValLysGluAsp : 75 :! !:!!||||||:!!:!!:!! !!!!!.!!! ! !! !:!!||| ! :::::: uThrValLeuPheValLeuValProCysGlyTyrPheCysValPheHisValLysAsn 294806 : GACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaac : 294862 76 : IleValSerLysLeuLysThrLeuGlyProIleSerTyrCysPheGlyGlyGlyPheA : 95 ::: |||:!!||| !|||||||||:!! !|||! !.!. !..! !.!!! ValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuA 294863 : gtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCA : 294922 96 : snTyrAlaValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleGluHisIleGl : 114 ..|||::! !|||:!!|||!:!! ! !! .!!!:!:!!||||||||| !!||||| rgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCysIleGluAspIleGl 294923 : GGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGA : 294979 115 : uThrAspTrpLysIleIleLysArgMetGluAspGlnGlnValMetLeuLysSerAla : 133 |!.!|||||||||:!:||| ! !.! !||| !!!:! !:!!|||:!!|||!:!||| uAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIleMetIleLysAsnAla 294980 : GAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCG : 295036 134 : LysIleGlyArgIleIleSerGlyCysIleAlaGlyPheMetHisIleGlyThrPheC : 153 ! !:!! !!:!! !!:!!!! !..!.!!.!! !.!.!!::!!! !..!.!! ! ! MetValThrGlnArgMetThrValAlaPheThrIleIleIleTyrSerSerAlaValS 295037 : ATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGT : 295096 154 : ysPheCysIleValLeuGlyValLeuLysArgThrIleLysIleGlyAsnAspSerMe : 172 !:! ! !:!!::: ............:!::!! ..!!!. ! !:!! erTyrHisAlaIleValProPhePheSerAsnAlaLeuGlu---AsnLysLysAsnAs 295097 : CGTATCACGCCATTGtgccatttttttcaaacgctTTGGAG---AACAAGAAGAATAA : 295150 173 : tGluMetTyrValLeuProPheProThrTyrLysIleProValAsp : 187 !!!: !!.!||||||.!!||| !|||:!!:!! !|||||| nThrIleArgAlaLeuProIleProGlyTyrGluLeuPheValAsp 295151 : TACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGAC : 295197 vulgar: AmOr48 18 187 . KQ414889.1 294690 295197 + 194 M 17 51 G 0 3 M 131 393 G 1 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294691 295197 194 + . gene_id 17 ; sequence AmOr48 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294691 295197 . + . KQ414889.1 exonerate:protein2genome:local exon 294691 295197 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294691 295197 194 + . alignment_id 17 ; Query AmOr48 ; Align 294691 19 51 ; Align 294745 36 393 ; Align 295138 168 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 191 Query range: 16 -> 241 Target range: 204233 -> 204908 17 : GluTyrSerIleGlnLeuAsnArgTrpLeuSerLysMetIleGlyValTrpProLeuP : 36 ..!|||:!!! !!::!!! !:! !:!!! ! !!!::!!|||!.!||||||:!!| ArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaTrpProIleP 204234 : AGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGTGGCCGATTC : 204291 37 : roSerPheThrSerLysPheGluLysIleMetThrLysIleLeuIlePhePheTyrTr : 55 || ! !:!!||| !||| !!:!:!!:!: !::!||| ! ! ! !! !:: roValAsnSerSerProPheThrArgLeuValArgArgIleGluHisValValThrTy 204292 : CAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGTAGTCACCta : 204348 56 : pIleIleLeuLeuPheIleIleLeuAlaSerSerLeuHisPheLeuPheValLysGlu : 74 :...:::.........:!:|||:!! !!.!! !|||:!! ! !!!.!. !:!!:!! rPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheLeuLysGluLys 204349 : tttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAG : 204405 75 : AspIleValSerLysLeuLysThrLeuGlyProIleSerTyrCysPheGlyGlyGlyP : 94 :!! ! !! !:::||||||! !|||||||||||| ! !!||| ! ! ! !| AsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSerIleGlnPheP 204406 : AACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCATACAGTTCT : 204465 95 : heAsnTyrAlaValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleGluHisIl : 113 ||!!.|||:!!|||:!!|||! !|||! :!! ! |||!:! ! !!:!:.!. !|| heLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSerLeuAsnThrIl 204466 : TCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGTTTGAACACCAT : 204522 114 : eGluThrAspTrpLysIleIleLysArgMetGluAspGlnGlnValMetLeuLysSer : 132 |..! !|||||| ||| ! ! |||:!!!:! !:!!.!.! !..!!.! eArgArgAspTrp---IleGluAlaThrAspGluAsnArgLeuIlePheArgSerLys 204523 : CAGACGCGACTGG---ATAGAGGCTACGGATGAAAATCGGTTGATTTTCCGCTCGAAA : 204576 133 : AlaLysIleGlyArgIleIleSerGlyCysIleAlaGlyPheMetHisIleGlyThrP : 152 |||||||||||||||! !:!:! ! ! ! !|||!.! !|||:!! !||| !! AlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetTyrGlyGlyGlyL 204577 : GCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGTACGGCGGTGGTT : 204636 153 : heCysPheCysIleValLeuGlyValLeuLysArgThrIleLysIleGlyAsnAspSe : 171 !.|||!:! ! ! :!!||| !:!!|||!:! !!|||||| :!! ! !|||!: euCysTyrArgThrIleLeuProLeuLeuArgGlyThrIle---ValThrProAspAs 204637 : TGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATC---GTAACACCTGATAA : 204690 172 : rMetGluMetTyrValLeuProPheProThrTyrLysIle<-><->ProValAspThr : 188 !:!: !!: !||||||! !|||..!||| ::: ! !.!. ! nValThrIleArgProLeuProCysProValTyrPheValPhePheAsnGluGlnArg 204691 : CGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaacGAGCAACGT : 204747 189 : AsnProGlyHisGlyIleIleLeuSerLeuGlnTyrLeuThrSerTyrThrSerSerA : 208 :::|||..!:!!! !|||:!!!!!! !|||||| !:!!.!!.!!!:!..!!!!! !| SerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheValThrTyrA 204748 : TCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTGTTACTTACG : 204807 209 : laThrValValIleAlaPheSerLeuAlaThrValPheAlaTyrHisAlaIleGlyGl : 227 ||..!:!! ! !.!!! !.!!:!!..!.!!:!!|||!.! !|||||| !.!!.. laValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAlaCysSerMe 204808 : CTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGCGTGCAGCAT : 204864 228 : nLeuThrIleMetIleSerTrpIleGlnGluPheValAsnGln : 241 !|||! !|||:!!:!:!:! !!!:.!.! !.!!|||:!!:!! tLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLys 204865 : GCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAG : 204908 vulgar: AmOr48 16 241 . KQ414889.1 204233 204908 + 191 M 101 303 G 1 0 M 47 141 G 1 0 M 18 54 G 0 6 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204234 204908 191 + . gene_id 18 ; sequence AmOr48 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204234 204908 . + . KQ414889.1 exonerate:protein2genome:local exon 204234 204908 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 204234 204908 191 + . alignment_id 18 ; Query AmOr48 ; Align 204234 17 303 ; Align 204537 119 141 ; Align 204678 167 54 ; Align 204738 185 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 182 Query range: 327 -> 394 Target range: 272990 -> 273191 328 : TyrIleGlyGluValLeuThrGluArgCysLysGluIleGlyAsnMetValTyrMetT : 347 |||::: ::: ::: :::||||||:::||||||.!.:!:|||||||||| TyrLeuProLysLysAsnSer***GlnCysLysLysIleGlyGluValValTyrMetT 272991 : TACttaccgaagaaaaattcttaacagtgtaaaaaaattggcGAGGTAGTTTACATGA : 273048 348 : hrAsnTrpTyrHisLeuProAspLysAspIlePheAsnLeuIleMetIleIleValAr : 366 |||||||||||:!!||||||! !|||||||||.!!:!!||||||:!!|||||| !|| hrAsnTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerAr 273049 : CGAACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAG : 273105 367 : gSerGlyValGluTyrLysMetThrAlaGlyLysIleIleAspIleSerValIleThr : 385 |!!!.!!|||! ! !|||!!:|||||||||!:!|||:!! !!!:|||||| !||| gCysSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThr 273106 : ATGCAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACG : 273162 386 : PheGlyAsnIleValLysThrValPhe : 394 ||||||:!!:!! ... :::||| PheGlyAspValArgSerGlnLeuPhe 273163 : TTCGGCGATGTACgttctcaattattt : 273191 vulgar: AmOr48 327 394 . KQ414889.1 272990 273191 + 182 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272991 273191 182 + . gene_id 19 ; sequence AmOr48 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272991 273191 . + . KQ414889.1 exonerate:protein2genome:local exon 272991 273191 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272991 273191 182 + . alignment_id 19 ; Query AmOr48 ; Align 272991 328 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 169 Query range: 301 -> 389 Target range: 234809 -> 235147 302 : SerGluArgAspIleArgValLeuGlyIleTyrThrPheAlaValMetAsnValIleL : 321 ..!|||!::... ... |||..! !|||..!.!!!.! !:!!::!:!!! !! GlnGluLysSerLysGluLysLeuAlaSerTyrValIleValTyrValSerMetThrP 234810 : CAGGAAAAgtcgaaggaaaaattagCTTCATACGTCATCGTGTACGTGTCCATGACAT : 234867 322 : euSerThrPheLeuIleCysTyrIleGlyGluValLeuThrGluArgCysLysGlu{I : 340 !.::: |||:::...|||||||||||||||..!|||||||||!:! !..!{. heAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGlnValGlySer{P 234868 : TtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGCAGGTAGGATCA{T : 234924 341 : } >>>> Target Intron 1 >>>> {le}GlyAsnMetValTyrMetThrAsn : 348 } 74 bp {!!}|||.!.! ||||||||||||.!. }+- ++{he}GlyGluLysValTyrMetThrGlu 234925 : }ga.........................ag{TC}GGAGAAAAAGTGTACATGACCGAA : 235022 349 : TrpTyrHisLeuProAspLysAspIlePheAsnLeuIleMetIleIleValArgSerG : 368 ||||||!..|||||| !!||| ! !.!!..!|||:!!||||||||| !||||||. TrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerS 235023 : TGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGA : 235082 369 : lyValGluTyrLysMetThrAlaGlyLysIleIleAspIleSerValIleThrPheGl : 387 !!:!!! ! |||!!:||||||||||||.!!:!!.!.!!:|||||| !|||||||| erMetValIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGl 235083 : GCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGG : 235139 388 : yAsnIle : 389 |:!!:!: yAspVal 235140 : CGATGTG : 235147 vulgar: AmOr48 301 389 . KQ414889.1 234809 235147 + 169 M 38 114 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234810 235147 169 + . gene_id 20 ; sequence AmOr48 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234810 234924 . + . KQ414889.1 exonerate:protein2genome:local exon 234810 234924 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234925 234926 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 234925 234998 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234997 234998 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234999 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234999 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234810 235147 169 + . alignment_id 20 ; Query AmOr48 ; Align 234810 302 114 ; Align 235001 341 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 168 Query range: 277 -> 389 Target range: 301620 -> 302036 278 : IleCysPheMetGluMetPheLysAsnIleLeuSerIleCysMetPheSerTyrCysI : 297 :!!||| ::: |||::::::! !|||!:! ! .!.!!. !! ! LeuCysAlaValIleLysPheGluSerThrLeuAsnAlaLysPheLeuArgValIle* 301621 : CTCTGCgctgtaattaaatttgaatctACTTTAAATGCAAAGTTTTTACGAGTAATTT : 301678 298 : leLeuAlaGluTrpSerGluArgAspIleArgValLeuGlyIleTyrThrPheAlaVa : 316 !!!! !||||||..!.!.!!!|||! ! !!.!:!! !! !!:! ! ! !:! **Phe***GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLe 301679 : GATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTT : 301735 317 : lMetAsnValIleLeuSerThrPheLeuIleCysTyrIleGlyGluValLeuThrGlu : 335 !! !::: !!! !!!!!:!! !|||:!!.!!|||||||||||||||:!!|||:!!||| uThrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGlu 301736 : AACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAA : 301792 336 : Arg >>>> Target Intron 1 >>>> CysLysGluIleGlyAsnMetValTy : 345 !:! 80 bp |||!..:!!||||||::: !|| Gln++ ++CysSerGlnIleGlySerAlaSerTy 301793 : CAGgt.........................agTGTAGCCAAATTGGTTCAGCATCGTA : 301902 346 : rMetThrAsnTrpTyrHisLeuProAspLysAspIlePheAsnLeuIleMetIleIle : 364 | !! !:!!||||||:!!||||||! ||| !!:!:!!||||||:!::!!! ! rGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSer 301903 : CGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGC : 301959 365 : ValArgSerGlyValGluTyrLysMetThrAlaGlyLysIleIleAspIleSerValI : 384 |||! !||| ! ! ! |||:!:|||||||||||||||||||||:!!|||:!!! ValIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuA 301960 : GTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGA : 302019 385 : leThrPheGlyAsnIle : 389 !||||||.!!::!:!! snThrPheSerSerVal 302020 : ATACATTCAGCTCTGTA : 302036 vulgar: AmOr48 277 389 . KQ414889.1 301620 302036 + 168 M 59 177 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301621 302036 168 + . gene_id 21 ; sequence AmOr48 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301621 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301621 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301621 302036 168 + . alignment_id 21 ; Query AmOr48 ; Align 301621 278 177 ; Align 301878 337 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 334 -> 394 Target range: 283273 -> 283453 335 : GluArgCysLysGluIleGlyAsnMetValTyrMetThrAsnTrpTyrHisLeuProA : 354 ..!!:!||||||:!!:!!|||.!.:!!|||||||||||||||! !!:!:!!||||||| ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 355 : spLysAspIlePheAsnLeuIleMetIleIleValArgSerGlyValGluTyrLysMe : 373 |||||||||||.!!||||||:!!:!:|||||| !||||||.!!::: |||:: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 374 : tThrAlaGlyLysIleIleAspIleSerValIleThrPheGlyAsnIleValLysThr : 392 :||||||...|||:::|||...:::|||!.! !||||||! !:!!:!! !..! ! eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspValArgSerLeu 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTACGTTCACTT : 283445 393 : ValPhe : 394 :!!||| LeuPhe 283446 : CTTTTT : 283453 vulgar: AmOr48 334 394 . KQ414889.1 283273 283453 + 160 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283453 160 + . gene_id 22 ; sequence AmOr48 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283453 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283453 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283453 160 + . alignment_id 22 ; Query AmOr48 ; Align 283274 335 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 16 -> 116 Target range: 299686 -> 299989 17 : GluTyrSerIleGlnLeuAsnArgTrpLeuSerLysMetIleGlyValTrpPro<->L : 35 .!.|||!!!:!:|||:!! !!:!||||||! !||| ||||||||||||! ! | HisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpArgLeuL 299687 : CATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGCGATTGC : 299744 36 : euProSerPheThrSerLysPheGluLysIleMetThrLysIleLeuIlePhePheTy : 54 || !..! !:!!||||||.!.||| ! :!!:!::!!! :!!|||!!: .!.! euAspGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMetThrIleCy 299745 : TAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATGACAATATG : 299801 55 : rTrpIleIleLeuLeuPheIleIleLeuAlaSerSerLeuHisPheLeuPheValLys : 73 !!:: !! !|||!!!||||||:!!||| !!|||.!!! !:!!.!!!!!|||!.!:!! sPheSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePhePheAlaGlu 299802 : CTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCTTCGCGGAG : 299858 74 : GluAspIleValSerLysLeuLysThrLeuGlyProIleSerTyrCysPheGlyGlyG : 93 :!!..!||| ! !|||:!!|||..!!!!||||||:!!.!!!:!|||.!!..!..! LysSerIleHisValLysValLysValPheGlyProValGlyPheCysLeuSerSerI 299859 : AAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCA : 299918 94 : lyPheAsnTyrAlaValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleGluHi : 112 ! !!!!.|||..! !|||! !|||!.! ..!! .!!..! ||||||:!!|| leValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCysIleGlnHi 299919 : TCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGCATCCAACA : 299975 113 : sIleGluThrAsp : 116 |:!!|||! !||| sValGluArgAsp 299976 : CGTCGAGAGAGAC : 299989 vulgar: AmOr48 16 116 . KQ414889.1 299686 299989 + 159 M 18 54 G 0 3 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299687 299989 159 + . gene_id 23 ; sequence AmOr48 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299687 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299687 299989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299687 299989 159 + . alignment_id 23 ; Query AmOr48 ; Align 299687 17 54 ; Align 299744 35 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 335 -> 395 Target range: 244655 -> 244835 336 : ArgCysLysGluIleGlyAsnMetValTyrMetThrAsnTrpTyrHisLeuProAspL : 355 !:!||| !:!!:!!|||.!.:!!||||||||||||:!!||||||:!!||||||.!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 356 : ysAspIlePheAsnLeuIleMetIleIleValArgSerGlyValGluTyrLysMetTh : 374 :! |||.!!:!!||||||:!!|||||| !||||||..!:!!! !:!!!!:|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 375 : rAlaGlyLysIleIleAspIleSerValIleThrPheGlyAsnIleValLysThrVal : 393 ||||||||||:!!:!! !!!!:|||:!! !|||||||||:!!:!! !:!!||| ! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrLys 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAA : 244827 394 : PheVal : 395 .!!||| LeuVal 244828 : CTTGTT : 244835 vulgar: AmOr48 335 395 . KQ414889.1 244655 244835 + 158 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244835 158 + . gene_id 24 ; sequence AmOr48 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244835 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244835 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244835 158 + . alignment_id 24 ; Query AmOr48 ; Align 244656 336 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 288 -> 403 Target range: 206017 -> 207604 289 : SerIleCysMetPheSerTyrCysIleLeuAlaGluTrpSerGluArgAspIleArgV : 308 |||:!! ! !:!!!! !:!:!!! !||||||..!.!.!.!:!!! !! !! SerLeuGlnLysTyrArgThrIleValPhe***GluTrpGluAsnAsnAsnThrThrA 206018 : TCTTTACAGAAATACAGGACGATCGTGTTTTAGGAATGGGAGAACAATAATACAACAG : 206075 309 : alLeuGlyIleTyrThrPheAlaValMetAsnValIleLeuSerThrPheLeuIleCy : 327 .!:!! !:!:|||! ! ! !!!:::! !! !!!!!!!..!|||:!!:!!|| laValIleValTyrIleThrLeuGlnIleSerCysThrPheCysValPheIleLeuCy 206076 : CGGTTATAGTGTACATCACGTTGCAGATATCTTGTACATTCTGCGTTTTTATACTATG : 206132 328 : sTyrIleGlyGluValLeuThrGluArg >>>> Target Intron 1 >>>> C : 337 ||||||||||:!!:!!|||! !!!:!:! 81 bp sTyrIleGlyGlnLeuLeuIleAspGln++ ++A 206133 : CTACATCGGGCAGCTTCTTATCGATCAAgt.........................agA : 206243 338 : ysLysGluIleGlyAsnMetValTyrMetThrAsnTrpTyrHisLeuProAspLysAs : 356 ! ! ! :!:||| ! !! !! !..!|||||||||!.!||||||:!!!:! ! snHisValValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnArgHi 206244 : ACCACGTCGTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACA : 206300 357 : pIlePheAsnLeuIleMetIleIleValArgSerGlyValGluTyrLysMetThrAla : 375 ! !::!:!!|||:!!||||||!.!! !|||..! ! ! |||:!:|||||| sAlaArgSerMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuThrAla 206301 : TGCGCGCTCTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCT : 206357 376 : GlyLysIleIleAspIleSerValIleThrPheGlyAsn >>>> Target Intro : 389 ||||||!!:.!!!!:!!:|||:!! !!:!||| !:!! 1161 bp GlyLysMetPheGluMetSerLeuAlaSerPheThrAsp++ 206358 : GGTAAAATGTTCGAAATGTCTTTAGCTAGTTTCACCGATgt................. : 206401 390 : n 2 >>>> IleValLysThrValPheValTyrLeuAsnIleLeuArgGlnMet : 403 :!!:!!|||..!!.!.!.! !|||!!!||||||||||||:!!:!: ++ValMetLysValAlaMetGlyTyrPheAsnIleLeuArgGluVal 206402 : ........agGTAATGAAGGTGGCGATGGGATACTTCAACATACTCCGTGAAGTC : 207604 vulgar: AmOr48 288 403 . KQ414889.1 206017 207604 + 153 M 48 144 5 0 2 I 0 77 3 0 2 M 52 156 5 0 2 I 0 1157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206018 207604 153 + . gene_id 25 ; sequence AmOr48 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206018 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206018 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206398 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206398 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206399 206400 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206399 207559 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 207558 207559 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 207560 207604 . + . KQ414889.1 exonerate:protein2genome:local exon 207560 207604 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206018 207604 153 + . alignment_id 25 ; Query AmOr48 ; Align 206018 289 144 ; Align 206243 337 156 ; Align 207560 389 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 15 -> 226 Target range: 194165 -> 194795 16 : AsnGluTyrSerIleGlnLeuAsnArgTrpLeuSerLysMetIleGlyValTrpProL : 35 !.!||||||:!!:!!!:!:!! !:! !||| !! ! !||||||:!!|||||| ThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProA 194166 : ACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAA : 194223 36 : euProSerPheThrSerLysPheGluLysIleMetThrLysIleLeuIlePhePheTy : 54 ! !..!! ! ! !! ! ! ::!:!:.!..!!:!!! ! !:!: !!||| rgGluAspSerLeuArgAspArgValArgLeuPheAlaGlnThrGlyValValPhe-- 194224 : GGGAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTTC-- : 194280 55 : rTrpIleIleLeuLeuPheIleIleLeuAlaSerSerLeuHisPheLeuPheValLys : 73 !:!::!!! !|||:!!:!::!! !! ! !:!!:!! !! !|||! ! ----AlaLeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCys 194281 : ----GCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGC : 194331 74 : GluAspIleValSerLysLeuLysThrLeuGlyProIleSerTyrCysPheGlyGlyG : 93 ||||||:!:..!!!! ! :!!|||..!:!!!.! !! ! !!:! !!.!. !!.! GluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaI 194332 : GAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGA : 194391 94 : lyPheAsnTyrAlaValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleGluHi : 112 !.!!!!.!:! !..!:!!:!!:!!!.!!:!!!.!!:||||||!:!|||:!: !.! leIleLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGl 194392 : TCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGA : 194448 113 : sIleGluThrAspTrpLysIleIleLysArgMetGluAspGlnGlnValMetLeuLys : 131 .!!:||||||.!.!::!:! !:!::!! !! !||||||!:!||||||||| !!!. uMetGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsn 194449 : GATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAAT : 194505 132 : SerAlaLysIleGlyArgIleIleSerGlyCysIleAlaGlyPheMetHisIleGlyT : 151 !!!|||||||||||||||.!!.!!!!! ! ! !|||.!! :!! !|||. CysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyA 194506 : TGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCG : 194565 152 : hrPheCysPheCysIleValLeuGlyValLeuLysArgThrIleLysIleGlyAsnAs : 170 !!!!. !:! !|||:!!||| !:!!:!!..!..!! !||| ! ! !:!!:! laLeuProTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGluAspAs 194566 : CTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAA : 194622 171 : pSerMetGluMetTyrValLeuProPheProThrTyrLys<->IleProValAspThr : 188 !|||! :!!!!: !:!!! ! !!!. !!.!||| .!! !!:!!!!: ! nSerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAsp 194623 : CAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGAC : 194679 189 : AsnProGlyHisGlyIleIleLeuSerLeuGlnTyrLeuThrSerTyrThrSerSerA : 208 :::||| !:!!! !|||! !!!! !! !||| |||! !||| !! !! !! !: SerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuS 194680 : TCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGT : 194739 209 : laThrValValIleAlaPheSerLeuAlaThrValPheAlaTyrHisAlaIleGly : 226 !!||| ! ! !!:!||||||!.!.!!..!.!! ! |||..! !||| erThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGly 194740 : CGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGC : 194795 vulgar: AmOr48 15 226 . KQ414889.1 194165 194795 + 144 M 38 114 G 2 0 M 128 384 G 0 3 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194166 194795 144 + . gene_id 26 ; sequence AmOr48 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194166 194795 . + . KQ414889.1 exonerate:protein2genome:local exon 194166 194795 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 194166 194795 144 + . alignment_id 26 ; Query AmOr48 ; Align 194166 16 114 ; Align 194280 56 384 ; Align 194667 184 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 94 -> 265 Target range: 304359 -> 304866 95 : AsnTyrAlaValLeuLeuLeuArgLysAsnAspIleArgTyrCysIleGluHisIleG : 114 .!.|||:!!:!!||| ::: ... ::: !!:! ! !! ! !!:!!. GlnTyrSerIleLeuProCysLysLeuLysArgLeuValPheArg***GlyAspLeuS 304360 : CAATATTCTATACTTccttgcaaattaaaacgtttaGTGTTTCGATAAGGGGATCTCT : 304417 115 : luThrAspTrpLysIleIleLysArgMetGluAspGlnGlnValMetLeuLysSerAl : 133 ..|||! !:::!! :!::!! !:!:..!|||!:::!!:!!|||||||||! !!. erThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysTyrGl 304418 : CTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGG : 304474 134 : aLysIleGlyArgIleIleSerGlyCysIleAlaGlyPheMetHisIleGlyThrPhe : 152 !:!!!!:||||||! !:!:!!! ! ! !||| !||||||:!!! !||| ! ! yGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThr 304475 : GCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACC : 304531 153 : CysPheCysIleValLeuGlyValLeuLysArgThr<->IleLysIleGlyAsnAspS : 171 !!:! !! |||:!! ! !! !! !!||| :!: ! !||| !! IleTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgT 304532 : ATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTA : 304591 172 : erMetGluMetTyrValLeuProPheProThrTyrLysIleProValAspThrAsnPr : 190 !!!!::!! ! !|||! !||| ! !!:! ! !.!! !|||.!.|||!:!|| hrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerPr 304592 : CGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCC : 304648 191 : oGlyHisGlyIleIleLeuSerLeuGlnTyrLeuThrSerTyrThrSerSerAlaThr : 209 | !:!!! !:!::!!! !! !:!!!!.! !:!! !.!!|||..!! !! !:!!! ! oIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIle 304649 : TATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATA : 304705 210 : ValValIleAlaPheSerLeuAlaThrValPheAlaTyrHisAlaIleGlyGlnLeuT : 229 ..!!.! !|||! !.!!||||||.!!:!!|||||| |||||| !||||||:!! ThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleA 304706 : ACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTG : 304765 230 : hrIleMetIleSerTrpIleGlnGluPheValAsnGlnProGlnLysGlnAsnLysAs : 248 !|||:!:!!:||| ! :!: !!:.!!||||||... !:!!..!...:!! !:! spIleValMetSerArgLeuGlyAspLeuValAsnSerLysGluSerSerAspLeuAs 304766 : ATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCATCTGATTTAGA : 304822 249 : nIleArgIleAspGluIleSerIleIleIleGluHisHisLeuArgIleLeu : 265 !! !|||:!! ||| |||:!!||||||||||||||||||||| pLysArgLeuIleGlu---------IleValGluHisHisLeuArgIleLeu 304823 : TAAACGATTAATAGAA---------ATTGTTGAGCATCATTTGCGAATTTTA : 304866 vulgar: AmOr48 94 265 . KQ414889.1 304359 304866 + 133 M 70 210 G 0 3 M 89 267 G 3 0 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304360 304866 133 + . gene_id 27 ; sequence AmOr48 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304360 304866 . + . KQ414889.1 exonerate:protein2genome:local exon 304360 304866 . + . insertions 3 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 304360 304866 133 + . alignment_id 27 ; Query AmOr48 ; Align 304360 95 210 ; Align 304573 165 267 ; Align 304840 257 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 373 -> 404 Target range: 262017 -> 262201 374 : ThrAlaGlyLysIleIleAspIleSerValIleThrPheGlyAsn >>>> Target : 389 ||||||||||||:!!:!!.!.!!:|||||| !|||||||||:!! 9 ThrAlaGlyLysLeuValGlnMetSerValTyrThrPheGlyAsp++ 262018 : ACCGCCGGGAAATTAGTTCAAATGTCGGTTTACACGTTCGGCGATgt........... : 262065 390 : Intron 1 >>>> IleValLysThrValPheValTyrLeuAsnIleLeuArgGln : 402 1 bp :!:|||||||||!.!|||!.!|||||||||:!:||||||||| ++ValValLysThrAlaPheAlaTyrLeuAsnLeuLeuArgGln 262066 : ..............agGTGGTTAAAACTGCTTTCGCGTATCTGAATCTGTTGCGTCAA : 262193 403 : MetThr : 404 |||||| MetThr 262194 : ATGACG : 262201 vulgar: AmOr48 373 404 . KQ414889.1 262017 262201 + 107 M 15 45 5 0 2 I 0 87 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262018 262201 107 + . gene_id 28 ; sequence AmOr48 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262018 262062 . + . KQ414889.1 exonerate:protein2genome:local exon 262018 262062 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 262063 262064 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 262063 262153 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 262152 262153 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 262154 262201 . + . KQ414889.1 exonerate:protein2genome:local exon 262154 262201 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262018 262201 107 + . alignment_id 28 ; Query AmOr48 ; Align 262018 374 45 ; Align 262154 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 299 -> 340 Target range: 258264 -> 258387 300 : GluTrpSerGluArgAspIleArgValLeuGlyIleTyrThrPheAlaValMetAsnV : 319 ||||||||| !!::||||||::: |||... ||| !.!. !:!!!!::::: GluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheMetIleLeuIleSerL 258265 : gaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTATGATACTCATATcac : 258322 320 : alIleLeuSerThrPheLeuIleCysTyrIleGlyGluValLeuThrGluArgCysLy : 338 :: ...::: |||:::||||||||||||||||||:!!|||||||||!:! euSerPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluGlnValPr 258323 : tttctttcaatatttttgtaatatgttACATAGGTGAAATATTAACAGAACAGGTACC : 258379 339 : sGluIle : 340 |||||| oGluIle 258380 : agagatt : 258387 vulgar: AmOr48 299 340 . KQ414889.1 258264 258387 + 103 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258265 258387 103 + . gene_id 29 ; sequence AmOr48 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 258265 258387 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258387 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258265 258387 103 + . alignment_id 29 ; Query AmOr48 ; Align 258265 300 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1027 Query range: 0 -> 404 Target range: 259721 -> 262201 1 : MetAlaAspAspLeuAlaLysIleGluLysLysPheGlyAspLeuSerGluTyrSerI : 20 |||.!!:!! ! ! !!.! :!!|||! !!..||| !..!! !|||!!:||||||: MetThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerL 259722 : ATGACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCC : 259779 21 : leGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProAlaSerPheTyrLy : 39 !!|||||||||||||||.!!|||||||||||||||||||||||| !!|||! !! !! euGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 259780 : TCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCAC : 259836 40 : sSerArgIleGluLysIleValSerLysIleLeuIleValIleCysTrpIleSerSer : 58 !!!!|||:!!|||||||||:!!||| ||||||||| !!||||||!::! !!!!! ! rThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIle 259837 : GACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATA : 259893 59 : LeuPheThrLeuIleProGlyValLeuHisPhePheLeuGluLysGluAspIleTyrV : 78 ||| !!|||||||||||| !!|||||||||.!..!.||||||||||||..!:!:|||: LeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrM 259894 : CTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACA : 259953 79 : alLysLeuLysIleLeuGlyProLeuThrHisTrpLeuValGlyGlyPheAsnTyrAl : 97 !!||| !|||:!:|||||||||||||||||||||!!!|||||| !!.!!||||||.! etLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrTh 259954 : TGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACAC : 260010 98 : aValLeuLeuLeuArgLysAspAspIleTyrTyrCysIleLysGlnIleCysAlaAsp : 116 !..!|||||||||||| |||||| ! !|||:!::!!!!.:!: !||| rThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAsp 260011 : AACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGAT : 260067 117 : TrpAsnIleIleThrLysLysGlnAspGlnGlnValMetLeuLysAsnAlaLysIleG : 136 |||!..|||||||||!:!:!!:!!||||||.!.|||||||||!:! !!||||||.!!| TrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheG 260068 : TGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCG : 260127 137 : lyArgTyrValAlaValPheCysThrValPheLeuGlnGlyGlyValPheCysThrCy : 155 ||||||||||||||!.!! !|||.!!!.!|||:!!||||||||||||.!.||| !|| lyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCy 260128 : GCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTG : 260184 156 : sLeuAlaLeuGlyAlaPheLysLysThrIleLysValAspAsnGluThrValAsnIle : 174 ||||!.! !! ! ! !! !:!!..!|||:!!|||! ||||||||| !! !:!! sLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal 260185 : TTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTT : 260241 175 : TyrAsnLeuProCysProAlaTyrAsnMetProValAspThrAsn<-><->ProThrH : 192 :!! ||||||||| !!!.!|||!!. !! !:!!:!!..!||| |||! !: HisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetA 260242 : CATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGA : 260301 193 : isAspIleIleLeuGlyThrGlnLeuLeuSerAlaPheIleCysSerSerSerThrAl : 211 !!!!:|||:!!|||! !..!|||!!!:!!|||!.!|||||| !:!|||||||||!. snGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrVa 260302 : ACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGT : 260358 212 : aGlyAlaPheSerPheValAlaIleCysAlaSerHisAlaLeuGlyGlnLeuAsnLeu : 230 !||| !||||||.!!!.!|||:!! .!!:!!||||||! !||||||||||||:!! lGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnVal 260359 : TGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTG : 260415 231 : MetValIleTrpIleAsnGluTyrValAsnArgProLysLysLeuAsnAsnAsnAlaT : 250 :!::!! !||||||!..|||!:!|||:!!..! !!!:!!!. !!!.!!.!!.||| LeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaP 260416 : CTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTC : 260475 251 : yrIleAsnLysIleGlyIleIleValGluHisHisLeuArgIleLeu{Se} >>>> : 266 !.!!!!.:!!||||||:!:||||||||||||||||||||| !|||{!!} roPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeu{Th}++ 260476 : CTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC{AC}gt..... : 260527 267 : Target Intron 1 >>>> {r}PheIleAlaArgValGluHisValMetSerPro : 277 257 bp {!}||||||:!!|||:!!||| !!||||||!:!! ! ++{r}PheIleSerArgIleGluAspValMetAsnArg 260528 : ....................ag{C}TTCATATCGCGTATCGAGGATGTGATGAACCGG : 260813 278 : IleCysPheMetGluMetIleLysCysMetValGlyIleCysMetProIleTyrTyrI : 297 |||||||||:!!|||:!!.!!!:!|||! :!!! !||||||:!:! ! !||||||| IleCysPheLeuGluLeuPheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrI 260814 : ATATGCTTCCTGGAGTTGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATA : 260873 298 : leLeuMet >>>> Target Intron 2 >>>> GluTrpSerGluHisAsnIle : 306 |||||||| 852 bp ||||||:!!|||!!.:!!||| leLeuMet++ ++GluTrpAlaGluGlnAspIle 260874 : TTCTTATGgt.........................agGAATGGGCTGAGCAAGATATA : 261752 307 : GlnAsnLeuThrValTyrValMetIleIleIleSerMetThrTyrAsnIlePheLeuV : 326 |||||||||:!!..!||| !!|||!!::!:|||:!!!!: !!:!|||:!!|||:!!: GlnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheIleI 261753 : CAAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAA : 261812 327 : alCysTyrIleGlyGluIleIleThrGluGlu >>>> Target Intron 3 >>> : 337 !!||||||||||||||||||:!!||||||:!! 81 bp leCysTyrIleGlyGluIleLeuThrGluGln++ 261813 : TCTGTTACATCGGTGAAATACTAACGGAACAGgt........................ : 261847 338 : > CysLysLysIleGlyAspIleValTyrMetThrAsnTrpTyrGluLeuSerAspL : 355 |||..!|||:!!||||||:!!||||||||||||||||||||| ! ||| !!|||| ++CysSerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuProAspL 261848 : .agTGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACCTGATA : 261980 356 : ysAsnIleLeuAsnLeuMetMetIleIleThrArgSerSerMetAsnIleAsnMetTh : 374 ||!:!||||||:!!|||!!::!!||||||.!!|||!.! !! !... ||| ! ysSerIleLeuAspLeuIleLeuIleIleAlaArgLysProProGly---Asn***Ph 261981 : AAAGTATCCTTGATTTGATTTTGATCATTGCACGAAAACCGCCGGGA---AATTAGTT : 262034 375 : rAlaGlyLysMetThrAsnMetSer{Va} >>>> Target Intron 4 >>>> : 383 ! ! !!::!.!.|||..! !:!!{:!} 75 bp eLysCysArgPheThrArgSerAla{Il}++ ++ 262035 : CAAATGTCGGTTTACACGTTCGGCG{AT}gt.........................ag : 262136 384 : {l}LeuThrPheGlyLysIleValLysSerIlePheAlaTyrLeuAsnValLeuArgG : 402 {!}! ! !.!. !:!!:!:||||||!!! !|||||||||||||||:!!||||||| {e}ProLeuIlePheGlnValValLysThrAlaPheAlaTyrLeuAsnLeuLeuArgG 262137 : {T}CCGTTGATATTCCAGGTGGTTAAAACTGCTTTCGCGTATCTGAATCTGTTGCGTC : 262193 403 : lnIleThr : 404 ||!!:||| lnMetThr 262194 : AAATGACG : 262201 vulgar: AmOr49 0 404 . KQ414889.1 259721 262201 + 1027 M 189 567 G 0 6 M 76 228 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 34 102 G 1 0 M 11 33 S 0 2 5 0 2 I 0 71 3 0 2 S 1 1 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259722 262201 1027 + . gene_id 1 ; sequence AmOr49 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259722 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259722 260524 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262062 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262062 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 262063 262064 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 262063 262137 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 262136 262137 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 262138 262201 . + . KQ414889.1 exonerate:protein2genome:local exon 262138 262201 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259722 262201 1027 + . alignment_id 1 ; Query AmOr49 ; Align 259722 1 567 ; Align 260295 190 228 ; Align 260783 267 99 ; Align 261734 300 111 ; Align 261926 337 102 ; Align 262028 372 33 ; Align 262139 384 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 822 Query range: 0 -> 298 Target range: 266586 -> 267555 1 : MetAlaAspAspLeuAlaLysIleGluLysLysPheGlyAspLeuSerGluTyrSerI : 20 ||||||:!!!!:! ! ! !|||||| !!!..!...!..!||||||!!:||||||: MetAlaAsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerL 266587 : ATGGCTAACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCC : 266644 21 : leGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProAlaSerPheTyrLy : 39 !:|||!!.|||||||||.!!|||||||||||||||||||||||| !!! !! !! euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuTh 266645 : TGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCAC : 266701 40 : sSerArgIleGluLysIleValSerLysIleLeuIleValIleCysTrpIleSerSer : 58 !|||!:!:!!|||::!||||||||| ! !|||||||||||||||!:: !|||! ! rSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIle 266702 : ATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATA : 266758 59 : LeuPheThrLeuIleProGlyValLeuHisPhePheLeuGluLysGluAspIleTyrV : 78 |||||||||:!!|||||| !!:!!!!!|||.!! !!|||||| ! |||..!||| !. LeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgT 266759 : CTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTA : 266818 79 : alLysLeuLysIleLeuGlyProLeuThrHisTrpLeuValGlyGlyPheAsnTyrAl : 97 .!|||:!!|||:!:!!!|||||||||!:!||||||!!!|||||||||.!!||||||.! hrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrTh 266819 : CGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACAC : 266875 98 : aValLeuLeuLeuArgLysAspAspIleTyrTyrCysIleLysGlnIleCysAlaAsp : 116 !..!||||||||||||!.. ! !!:||| ! !|||:!!:!!!!.!!: .!!||| rThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAsp 266876 : CACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGAT : 266932 117 : TrpAsnIleIleThrLysLysGlnAspGlnGlnValMetLeuLysAsnAlaLysIleG : 136 |||!..|||:!:|||!:! !:!!|||:!!|||||||||||||||||||||!:!|||| TrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleG 266933 : TGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCG : 266992 137 : lyArgTyrValAlaValPheCysThrValPheLeuGlnGlyGlyValPheCysThrCy : 155 ||||||||:!!|||:!!||||||.!!!.!|||:!!||| !!||||||.!! !! !|| lyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCy 266993 : GTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTG : 267049 156 : sLeuAlaLeuGlyAlaPheLysLysThrIleLysValAspAsnGluThrValAsnIle : 174 |:!! ! !!.! ! !! !:!!|||:!::!!|||! !||||||||| !! !:!! sValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleVal 267050 : TGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTA : 267106 175 : TyrAsnLeuProCysProAlaTyrAsn<-><->MetProValAspThrAsnProThrH : 192 :!! ||||||||| !!!.!|||!!. !!: !!|||||||||!:!||||||: HisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrA 267107 : CATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGA : 267166 193 : isAspIleIleLeuGlyThrGlnLeuLeuSerAlaPheIleCysSerSerSerThrAl : 211 !!!!:|||:!!|||! !:!!|||!!!:!!|||!.!|||||| !:!||||||..!!. snGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValVa 267167 : ACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGT : 267223 212 : aGlyAlaPheSerPheValAlaIleCysAlaSerHisAlaLeuGlyGlnLeuAsnLeu : 230 !||||||||||||.!!!.!|||:!:! !|||:!!||||||! !|||||||||!:!:!! lGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerVal 267224 : CGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTG : 267280 231 : MetValIleTrpIleAsnGluTyrValAsnArgProLysLysLeuAsnAsnAsnAlaT : 250 :!!:!!!!:||||||!!.|||!:!||||||||| !!!:! ! !|||!!.|||!.!! LeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValC 267281 : CTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTT : 267340 251 : yrIleAsnLysIleGlyIleIleValGluHisHisLeuArgIleLeu{Se} >>>> : 266 !.!!:!!|||||||||:!::!!||||||||||||||||||:!!|||{||} ysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 267341 : GCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG}gt..... : 267392 267 : Target Intron 1 >>>> {r}PheIleAlaArgValGluHisValMetSerPro : 277 69 bp {|}||||||||||||:!!||| !||||||||| ! ++{r}PheIleAlaArgIleGluSerValMetSerGlu 267393 : ....................ag{C}TTCATAGCACGTATCGAAAGTGTAATGAGCGAA : 267490 278 : IleCysPheMetGluMetIleLysCysMetValGlyIleCysMetProIleTyrTyrI : 297 |||||||||||||||:!!.!!||||||! :!!! !||||||:!!! !! !||||||| IleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSerTyrTyrI 267491 : ATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCTATTATA : 267550 298 : leLeu : 298 ||||| leLeu 267551 : TCCTT : 267555 vulgar: AmOr49 0 298 . KQ414889.1 266586 267555 + 822 M 183 549 G 0 6 M 82 246 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266587 267555 822 + . gene_id 2 ; sequence AmOr49 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266587 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266587 267389 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267555 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266587 267555 822 + . alignment_id 2 ; Query AmOr49 ; Align 266587 1 549 ; Align 267142 184 246 ; Align 267460 267 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 821 Query range: 6 -> 298 Target range: 274350 -> 275306 7 : LysIleGluLysLysPheGlyAspLeuSerGluTyrSerIleGlnPheAsnArgTrpI : 26 !!.:!! !!!.|||! !..!||||||!!:||||||:!:|||!!.|||||||||. AsnValThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpP 274351 : AACGTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGT : 274408 27 : leLeuLysProIleGlyAlaTrpProAlaSerPheTyrLysSerArgIleGluLysIl : 45 !!|||||||||||||||||||||||| !:!!! !! !!!!:!.!!|||::!|| heLeuLysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIl 274409 : TCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAAT : 274465 46 : eValSerLysIleLeuIleValIleCysTrpIleSerSerLeuPheThrLeuIlePro : 64 |:!!||| ! :::|||||| :::|||::: !! !! !|||! !|||:!!|||||| eLeuSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIlePro 274466 : CCTTTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCA : 274522 65 : GlyValLeuHisPhePheLeuGluLysGluAspIleTyrValLysLeuLysIleLeuG : 84 .!!:!!!!!|||.!!.!.|||! ! ! |||..!:!!:!!:!!|||||||||:!:|||| SerIlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuG 274523 : AGCATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCG : 274582 85 : lyProLeuThrHisTrpLeuValGlyGlyPheAsnTyrAlaValLeuLeuLeuArgLy : 103 |||||||| !||||||!!!:!!||||||.!!||||||.!!..!||||||||||||!. lyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSe 274583 : GTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAG : 274639 104 : sAspAspIleTyrTyrCysIleLysGlnIleCysAlaAspTrpAsnIleIleThrLys : 122 . ! !!:||| ! !|||:!::!!!!.!!: .!!||||||!..|||:!:|||!:! rLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArg 274640 : CAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGA : 274696 123 : LysGlnAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaValP : 142 !:!!||||||||||||||||||||||||||||||||||||||||||||||||:!!| ProGluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIleP 274697 : CCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCT : 274756 143 : heCysThrValPheLeuGlnGlyGlyValPheCysThrCysLeuAlaLeuGlyAlaPh : 161 |||||.!!!.!|||:!!||| !!||||||.!!||| !|||:!! ! !!.! ! heCysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheTh 274757 : TCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCAC : 274813 162 : eLysLysThrIleLysValAspAsnGluThrValAsnIleTyrAsnLeuProCysPro : 180 !! !:!!|||:!!:!!|||! ||||||||| !!.!:!::!!! ||||||||| ! rMetGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLys 274814 : TATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAA : 274870 181 : AlaTyrAsn<-><->MetProValAspThrAsnProThrHisAspIleIleLeuGlyT : 198 ||||||!!. :!: !!|||||||||!:!||||||:!!!!:|||:!!|||!.!: AlaTyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValLeuAlaS 274871 : GCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCT : 274930 199 : hrGlnLeuLeuSerAlaPheIleCysSerSerSerThrAlaGlyAlaPheSerPheVa : 217 !!|||!!!:!!|||!.!|||||| !:!||||||.!!!.!||||||||||||.!!!. erGlnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAl 274931 : CGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGC : 274987 218 : lAlaIleCysAlaSerHisAlaLeuGlyGlnLeuAsnLeuMetValIleTrpIleAsn : 236 !|||:!:! !|||:!!||||||! !|||||||||!:!:!!:!!:!!|||||||||!.! aAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThr 274988 : CGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACC : 275044 237 : GluTyrValAsnArgProLysLysLeuAsnAsnAsnAlaTyrIleAsnLysIleGlyI : 256 |||!:!||||||!.! !!!:! ! |||...|||...|||...::!:!!||||||: GluPheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyV 275045 : GAGTTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCG : 275104 257 : leIleValGluHisHisLeuArgIleLeu{Se} >>>> Target Intron 1 >> : 266 !::!!||||||||||||||||||:!!|||{||} 74 bp alValValGluHisHisLeuArgValLeu{Se}++ 275105 : TGGTTGTCGAACATCATCTGAGGGTACTC{AG}gt....................... : 275138 267 : >> {r}PheIleAlaArgValGluHisValMetSerProIleCysPheMetGluMet : 283 {|}||||||||||||:!!||| !!||||||!:!! !|||||||||||||||:!! ++{r}PheIleAlaArgIleGluAspValMetAsnArgIleCysPheMetGluLeu 275139 : ..ag{T}TTCATAGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAATTG : 275259 284 : IleLysCysMetValGlyIleCysMetProIleTyrTyrIleLeu : 298 .!!||||||! :!!! !!!:||||||! ! !|||||||||||| PheLysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleLeu 275260 : TTCAAGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTCTC : 275306 vulgar: AmOr49 6 298 . KQ414889.1 274350 275306 + 821 M 177 531 G 0 6 M 82 246 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274351 275306 821 + . gene_id 3 ; sequence AmOr49 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274351 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274351 275135 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274351 275306 821 + . alignment_id 3 ; Query AmOr49 ; Align 274351 7 531 ; Align 274888 184 246 ; Align 275211 267 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 796 Query range: 9 -> 339 Target range: 262825 -> 264657 10 : LysLysPheGlyAspLeuSerGluTyrSerIleGlnPheAsnArgTrpIleLeuLysP : 29 :!!!..||||||..!||||||!!:||||||:!:|||.!.|||||||||:!:||||||| GluSerPheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysP 262826 : GAAAGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAAC : 262883 30 : roIleGlyAlaTrpProAlaSerPheTyrLysSerArgIleGluLysIleValSerLy : 48 ||||||||||||||||| !||| !! ! ||||||!!:|||::!|||:!!!!! roIleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPh 262884 : CGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTT : 262940 49 : sIleLeuIleValIleCysTrpIleSerSerLeuPheThrLeuIleProGlyValLeu : 67 :!!|||||||||:!!|||!:: ! !! !|||! !|||:!!||||||..!:!!||| eLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeu 262941 : TCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTT : 262997 68 : HisPhePheLeuGluLysGluAspIleTyrValLysLeuLysIleLeuGlyProLeuT : 87 |||.!! !!|||||| |||:!!.!!:!!:!!||||||:!!:!!|||||||||||| HisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuG 262998 : CATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCG : 263057 88 : hrHisTrpLeuValGlyGlyPheAsnTyrAlaValLeuLeuLeuArgLysAspAspIl : 106 !!!.|||!!!|||||| !.!!||||||.!! !|||||||||!.!!.. ! ||||| lyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIl 263058 : GTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATAT : 263114 107 : eTyrTyrCysIleLysGlnIleCysAlaAspTrpAsnIleIleThrLysLysGlnAsp : 125 | ! !|||:!::!!!!.:!: ! !|||||| !|||:!:|||!:! !:!!||| eGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAsp 263115 : ACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGAT : 263171 126 : GlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaValPheCysThrV : 145 |||!:::!!|||||||||||||||||| !|||||||||||||||!.!! !|||.!!: GlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaI 263172 : CAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGA : 263231 146 : alPheLeuGlnGlyGlyValPheCysThrCysLeuAlaLeuGlyAlaPheLysLysTh : 164 !!|||:!!||| !.!!:!!.!.|||! !||||||!.! !!.! ! !! !:!!.. lePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnVa 263232 : TCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGT : 263288 165 : rIleLysValAspAsnGluThrValAsnIleTyrAsnLeuProCysProAlaTyrAsn : 183 !|||:!!! !! !||||||||| !! !:!! !! ||||||||||||!.!|||!!. lIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLys 263289 : GATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAA : 263345 184 : <-><->MetProValAspThrAsnProThrHisAspIleIleLeuGlyThrGlnLeuL : 201 !!:|||||||||||||||||||||:!!!!:|||.!!|||!.!||||||!!!| GluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheL 263346 : GAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTC : 263405 202 : euSerAlaPheIleCysSerSerSerThrAlaGlyAlaPheSerPheValAlaIleCy : 220 |||||!.!|||||| !!!!:!!!!!|||!.!|||||||||.!!.!...!|||:!:! euSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPh 263406 : TGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTT : 263462 221 : sAlaSerHisAlaLeuGlyGlnLeuAsnLeuMetValIleTrpIleAsnGluTyrVal : 239 !|||.!!||||||! !||||||||||||:!!:!!:!! !||||||!..|||!:!||| eAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheVal 263463 : CGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTG : 263519 240 : AsnArgProLysLysLeuAsnAsnAsnAlaTyrIleAsnLysIleGlyIleIleValG : 259 |||!:! !!!:! ! !|||!!.||| !|||.!!!.!:!!||||||:!:||||||| AsnGlnSerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValG 263520 : AACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTG : 263579 260 : luHisHisLeuArgIleLeu{Se} >>>> Target Intron 1 >>>> {r}Ph : 267 ||||||||||||||:!!|||{||} 833 bp {|}|| luHisHisLeuArgValLeu{Se}++ --{r}Ph 263580 : AACATCATCTGAGAGTTCTG{AG}gt.........................ct{T}TT : 264436 268 : eIleAlaArgValGluHisValMetSerProIleCysPheMetGluMetIle<->Lys : 285 |||| ! !!..!.!. !! !! ... ...|||...::::!! :!: !:! eIleTyrCysThrAsnCysAspLysAspAsnPheCysLeuLeuGlnCysLeuSerArg 264437 : TATCTATTGCACAAATTGTGATAAagacaatttttgtttacttcAGTGTTTGTCCAGG : 264493 286 : CysMetValGlyIleCysMetProIleTyrTyrIleLeuMetGluTrpSerGluHisA : 305 !!!::!! !:!!!! ! !! ! ! !!:!!!!!..!||||||..!...|||: AspIleIlePheVal***AsnIleThrIleAspValPheGlnGluTrpGluSerHisA 264494 : GATATAATATTTGTATGAAATATAACAATTGACGTTTTTCAGGAATGGGAAAGTCAtg : 264553 306 : snIleGlnAsnLeuThrValTyrValMetIleIleIleSerMetThrTyrAsnIlePh : 324 ::|||||||||||||||..!||| !!||||||:!:||||||||| ! !|||||||| spIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerMetCysGlyAsnIlePh 264554 : atattcaaaatttgacTACATATTTCATGATACTGATATCAATGTGCGGCAACATTTT : 264610 325 : eLeuValCysTyrIleGlyGluIleIleThrGluGluCysLysLys : 339 ||||:!!||||||||||||||||||:!:||||||::: ||| eLeuMetCysTyrIleGlyGluIleLeuThrGluGlnValIleLys 264611 : TCTAATGTGTTATATCGGCGAGATATTGACTGAGcaggtaattaaa : 264657 vulgar: AmOr49 9 339 . KQ414889.1 262825 264657 + 796 M 174 522 G 0 6 M 82 246 S 0 2 5 0 2 I 0 829 3 0 2 S 1 1 M 18 54 G 0 3 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262826 264657 796 + . gene_id 4 ; sequence AmOr49 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262826 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262826 263601 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 264434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264433 264434 . + . intron_id 0 ; splice_site "CT" KQ414889.1 exonerate:protein2genome:local cds 264435 264657 . + . KQ414889.1 exonerate:protein2genome:local exon 264435 264657 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262826 264657 796 + . alignment_id 4 ; Query AmOr49 ; Align 262826 10 522 ; Align 263354 184 246 ; Align 264436 267 54 ; Align 264493 285 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 616 Query range: 0 -> 265 Target range: 256601 -> 257402 1 : MetAlaAspAspLeuAlaLysIleGluLysLysPheGlyAspLeuSerGluTyrSerI : 20 |||.!!:!!!!:!!!||| !:!!:!!! !!!.||| !..!! !|||!!:||||||: MetThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerL 256602 : ATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTC : 256659 21 : leGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProAlaSerPheTyrLy : 39 !!|||!!.|||||||||.!!|||||||||||||||||||||||| !!|||! ! !! euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 256660 : TCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCAC : 256716 40 : sSerArgIleGluLysIleValSerLysIleLeuIleValIleCysTrpIleSerSer : 58 !!!! !:!!|||::!! !||||||! :!!|||! !:!!:!!|||!:: !|||! ! rThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIle 256717 : TACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATA : 256773 59 : LeuPheThrLeuIleProGlyValLeuHisPhePheLeuGluLysGluAspIleTyrV : 78 |||||||||||||||||| !!:!!|||||| ! ||||||!!: ! !!:..!.!!|||: LeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrM 256774 : TTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAca : 256833 79 : alLysLeuLysIleLeuGlyProLeuThrHisTrpLeuValGlyGlyPheAsnTyrAl : 97 ::|||:::||| ...||||||:!!!:!||||||:!!:!!.!! !! !||||||.! etLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrTh 256834 : tgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACAC : 256890 98 : aValLeuLeuLeuArgLysAspAspIleTyrTyrCysIleLysGlnIleCysAlaAsp : 116 !:!!|||||||||!:! ! ! |||||| !||||||:!!:!!!!.||| .!!||| rLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAsp 256891 : GTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGAT : 256947 117 : TrpAsnIleIleThrLysLysGlnAspGlnGlnValMetLeuLysAsnAlaLysIleG : 136 |||!..!!::!:! !!:!:!!:!!|||||||||||||||:!!|||||||||!:!.!!| TrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheG 256948 : TGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCG : 257007 137 : lyArgTyrValAlaValPheCysThrValPheLeuGlnGlyGlyValPheCysThrCy : 155 ||||||||||||||..!||||||.!!!.!.!!:!!|||.!!|||||||||||| lyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePh 257008 : GTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttctt : 257064 156 : sLeuAlaLeuGlyAlaPheLysLysThrIleLysValAspAsnGluThrValAsnIle : 174 ::!:!!! !!.! ! !! !:!!! !||| ! |||! |||||||||..!! !:!: eValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleVal 257065 : cgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTG : 257121 175 : TyrAsnLeuProCysProAlaTyrAsn<-><->MetProValAspThrAsnProThrH : 192 |||||| ! !!!.!|||!!. :!! !|||||| !!:!||||||: ArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrA 257122 : CGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGA : 257181 193 : isAspIleIleLeuGlyThrGlnLeuLeuSerAlaPheIleCysSerSerSerThrAl : 211 !!!!:|||:!::!! !! !||| !! !|||:!!.!!|||...!!!!!!||||||!. snGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrVa 257182 : ACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGT : 257238 212 : aGlyAlaPheSerPheValAlaIleCysAlaSerHisAlaLeuGlyGlnLeuAsnLeu : 230 !.!! !||||||.!!!.!|||:!!! !|||!!!||||||! !|||||||||!.!:!! lSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrVal 257239 : TAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTG : 257295 231 : MetValIleTrpIleAsnGluTyrValAsnArgProLysLysLeuAsnAsnAsnAlaT : 250 :!::!! ||||||!..|||!:!||||||..! !!!:!!!.! ......... LeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheP 257296 : CTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttc : 257355 251 : yrIleAsnLysIleGlyIleIleValGluHisHisLeuArgIleLeu : 265 ..!!!.:!!||||||:!:|||||||||||||||||||||:!:||| roPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu 257356 : ctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG : 257402 vulgar: AmOr49 0 265 . KQ414889.1 256601 257402 + 616 M 183 549 G 0 6 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256602 257402 616 + . gene_id 5 ; sequence AmOr49 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256602 257402 . + . KQ414889.1 exonerate:protein2genome:local exon 256602 257402 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256602 257402 616 + . alignment_id 5 ; Query AmOr49 ; Align 256602 1 549 ; Align 257157 184 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 579 Query range: 15 -> 299 Target range: 236846 -> 237766 16 : SerGluTyrSerIleGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProA : 35 |||!!:||||||:!!|||!::||||||||| :!!||| !||||||.!!|||||| SerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProG 236847 : AGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCAC : 236904 36 : laSerPheTyrLysSerArgIleGluLysIleValSerLysIleLeuIleValIleCy : 54 ! !:!..!|||!.!:!!|||!:!! !:!!|||::!||||||! !|||||||| ln------PheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCy 236905 : AG------TTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTG : 236955 55 : sTrpIleSerSerLeuPheThrLeuIleProGlyValLeuHisPhePheLeuGluLys : 73 |!::! !:!!! !||||||:!!:!!|||||| !! !||||||.!..!.||||||||| sTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLys 236956 : CTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAA : 237012 74 : GluAspIleTyrValLysLeuLysIleLeuGlyProLeuThrHisTrpLeuValGlyG : 93 ! ! !.!!|||..!|||:!!|||||||||||| !!|||!:!||||||:!! !! !! GlyThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysI 237013 : GGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTA : 237072 94 : lyPheAsnTyrAlaValLeuLeuLeuArgLysAspAspIleTyrTyrCysIleLysGl : 112 !.!!!:!|||.!!:!!||||||||||||::: ! !||| !:!!! !.!!!!.!! leIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHi 237073 : TCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCA : 237129 113 : nIleCysAlaAspTrpAsnIleIleThrLysLysGlnAspGlnGlnValMetLeuLys : 131 .!!: .!!||||||!..! ! |||:::|||::: ::::::|||||||||||| sMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLys 237130 : TATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAG : 237186 132 : AsnAlaLysIleGlyArgTyrValAlaValPheCysThrValPheLeuGlnGlyGlyV : 151 !!||||||.!!.!!||||||!.!|||:!!! !||||||:!!|||:!!!!.||||||: TyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyI 237187 : TACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTA : 237246 152 : alPheCysThrCysLeuAlaLeuGlyAlaPheLysLysThrIleLysValAspAsnGl : 170 !!.!! ! !|||:!! ! !!.!:!! !! !! !..!:!! !|||! |||:! leLeuGlyTyrCysValMetThrAlaSerThrThrMetValValValValGlyAsnLy 237247 : TACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAA : 237303 171 : uThrValAsnIleTyrAsnLeuProCysProAlaTyrAsn<-><->MetProValAsp : 187 !|||..!! !:!: ! ||||||! ||| !|||!!. :!:||||||||| sThrThrIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAsp 237304 : GACTACGATCTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGAT : 237360 188 : ThrAsnProThrHisAspIleIleLeuGlyThrGlnLeuLeuSerAlaPheIleCysS : 207 |||||| !!! !:!!||||||:!!:!! !:!!|||!!!||||||!.!||||||...! ThrAsnThrMetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaA 237361 : ACGAATACTATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGA : 237420 208 : erSerSerThrAlaGlyAlaPheSerPheValAlaIleCysAlaSerHisAlaLeuGl : 226 :!!:!|||.!! !.!!!.!.!.|||.!!..!::! ! .!!|||||||||! !|| snAsnSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGl 237421 : ACAACAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGG : 237477 227 : yGlnLeuAsnLeuMetValIleTrpIleAsnGluTyrValAsnArgProLysLysLeu : 245 |||||||!:!:!!:!::!!:!:! !|||.!.!!:!:!|||!:!..! !!!:!::: ! yGlnLeuSerValValMetLeuSerIleGluAspPheValSerGluAlaArgArgArg 237478 : CCAGTTGAGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGA : 237534 246 : AsnAsnAsnAlaTyrIleAsnLysIleGlyIleIleValGluHisHisLeuArgIleL : 265 ...!!.:!!! !:!!.!!:!!:!!||| !! !|||||||||.!.|||||||||:!:| GlyLysAspAspHisPheAspGluIleProThrIleValGluGluHisLeuArgValL 237535 : GGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGT : 237594 266 : eu{Se} >>>> Target Intron 1 >>>> {r}PheIleAlaArgValGluHi : 273 ||{!:} 68 bp {!}||||||:!!|||:!!||| eu{As}++ ++{n}PheIleSerArgIleGluAl 237595 : TG{AA}gt.........................ag{C}TTCATATCGCGCATAGAGGC : 237686 274 : sValMetSerProIleCysPheMetGluMetIleLysCysMetValGlyIleCysMet : 292 :!!|||!:! ! ||||||:!!|||:!:!!:!:!||||||:!!!.!:!!||| aMetMetAsnLysAlaCysPheLeuGluLeuMetArgCysMetIleAlaValCysAla 237687 : AATGATGAACAAAGCGTGTTTCCTGGAGTTAATGAGGTGCATGATAGCTGTATGCGCA : 237743 293 : ProIleTyrTyrIleLeuMet : 299 ! ! !|||||||||!!!||| LeuGlyTyrTyrIlePheMet 237744 : CTTGGATATTATATATTCATG : 237766 vulgar: AmOr49 15 299 . KQ414889.1 236846 237766 + 579 M 20 60 G 2 0 M 146 438 G 0 6 M 82 246 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236847 237766 579 + . gene_id 6 ; sequence AmOr49 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 236847 237598 . + . KQ414889.1 exonerate:protein2genome:local exon 236847 237598 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 237599 237600 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 237599 237666 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 237665 237666 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 237667 237766 . + . KQ414889.1 exonerate:protein2genome:local exon 237667 237766 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 236847 237766 579 + . alignment_id 6 ; Query AmOr49 ; Align 236847 16 60 ; Align 236907 38 438 ; Align 237351 184 246 ; Align 237668 267 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 446 Query range: 16 -> 269 Target range: 232456 -> 233218 17 : GluTyrSerIleGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProAlaS : 36 ||||||||||||||| ! |||||||||.!!|||! !|||!!:|||||||||||| ! GluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgV 232457 : GAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTG : 232514 37 : erPheTyrLysSerArgIleGluLysIleValSerLysIleLeuIleValIleCysTr : 55 ! ! ! |||||| !:!!:!!:!!:!!:!!|||:!:|||! !:!!! !||| alThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHi 232515 : TTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCA : 232571 56 : pIleSerSerLeuPheThrLeuIleProGlyValLeuHisPhePheLeuGluLysGlu : 74 ! !! !:!!! !:!!:!!:!!||| !!:!!||| !.!!.!.!!!||| ! ! sSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThr 232572 : TTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACG : 232628 75 : AspIleTyrValLysLeuLysIleLeuGlyProLeuThrHisTrpLeuValGlyGlyP : 94 ..!:!! ! ! !!:!:!!||| !:!!||||||:!!!:!|||!::|||:!!|||! !! SerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluL 232629 : AGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAAT : 232688 95 : heAsnTyrAlaValLeuLeuLeuArgLysAspAspIleTyrTyrCysIleLysGlnIl : 113 !.||||||..! !|||||| !!:! !:!!|||||| !||||||:!::!!|||:! euAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnVa 232689 : TGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGT : 232745 114 : eCysAlaAspTrpAsnIleIleThrLysLysGlnAspGlnGlnValMetLeuLysAsn : 132 : !||||||...! !:!!! !||| !!!::.!.:!!|||||||||||| lLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsn 232746 : GAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAAC : 232802 133 : AlaLysIleGlyArgTyrValAlaValPheCysThrValPheLeuGlnGlyGlyValP : 152 ||||||:!!||||||! :!!||| !.!!..!.!! !!! !:!!!!. !|||||| AlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValG 232803 : GCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCG : 232862 153 : heCysThrCysLeuAlaLeuGlyAlaPheLysLysThrIleLysValAspAsnGluTh : 171 !! ! ! :!!!.! !||| ! !! !!..|||.!! ! |||! ||||||!: lySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSe 232863 : GCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAG : 232919 172 : rValAsnIleTyrAsnLeuProCysProAlaTyrAsnMetProValAspThr<-><-> : 189 ! !:::!!:||| ||||||||| !! !|||!..! !! !:!!|||||| rTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPhe 232920 : TTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTC : 232976 190 : AsnProThrHisAspIleIleLeuGlyThrGlnLeuLeuSerAlaPheIleCysSerS : 208 !:!||||||:!!!!:|||!!:!!!! ! !|||! !||||||!.!|||||| !:!| SerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnS 232977 : AGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACT : 233036 209 : erSerThrAlaGlyAlaPheSerPheValAlaIleCysAlaSerHisAlaLeuGlyGl : 227 || !|||!.!||||||! !.!!!!.! !|||:!! |||! !||||||! !||||| erValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGl 233037 : CCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACA : 233093 228 : nLeuAsnLeuMetValIleTrpIleAsnGluTyrValAsnArgProLysLysLeuAsn : 246 |||||||:!!:!!:!! :!::!!!!:! |||:!! !!||| !! !.!. nLeuAsnValValMetSerLysLeuAspAspLeuValAsp---AlaLysGlyGlnGlu 233094 : GCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGAC---GCGAAAGGGCAGGAG : 233147 247 : AsnAsnAlaTyrIleAsnLysIleGlyIleIleValGluHisHisLeuArgIleLeuS : 266 .!.!..!.! !..|||:!!|||.!!|||||||||||||||||||||! !|||! GluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeuA 233148 : GAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTAA : 233207 267 : erPheIleAla : 269 !!!:!:!::!! rgTyrLeuSer 233208 : GGTATTTGTCT : 233218 vulgar: AmOr49 16 269 . KQ414889.1 232456 233218 + 446 M 172 516 G 0 6 M 52 156 G 1 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232457 233218 446 + . gene_id 7 ; sequence AmOr49 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232457 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232457 233218 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 232457 233218 446 + . alignment_id 7 ; Query AmOr49 ; Align 232457 17 516 ; Align 232979 189 156 ; Align 233135 242 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 424 Query range: 18 -> 336 Target range: 217177 -> 219439 19 : SerIleGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProAlaSerPheT : 38 |||||||||!::|||||||||:!:|||||||||!!:||| !|||||| !||| ! SerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnSerArgT 217178 : aGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACTCACGTA : 217235 39 : yrLysSerArgIleGluLysIleValSerLysIleLeuIleValIleCysTrpIleSe : 57 !! !!!||| !..!||||||:!!! !|||:!::!!! !!.!:!!|||!:: !! hrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTyrGlyLe 217236 : CCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTACGGTTT : 217292 58 : rSerLeuPheThrLeuIleProGlyValLeuHisPhePheLeuGluLysGluAspIle : 76 !! ! !||| !!!!:!!||| !! !:!!:!! ! ||||||||| ||||||:!! uIleSerPheLeuPheValProCysSerMetTyrValPheLeuGluValGluAspLeu 217293 : GATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAGATCTC : 217349 77 : TyrValLysLeuLysIleLeuGlyProLeuThrHisTrpLeuValGlyGlyPheAsnT : 96 |||! !|||||||||:!:!!!|||||||||! ! !!! :!!:!!!.! ! !!!!.| TyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValMetAlaPheValLysT 217350 : TACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGT : 217409 97 : yrAlaValLeuLeuLeuArgLysAspAspIleTyrTyrCysIleLysGlnIleCysAl : 115 || ! !|||:!!:!!!.!|||! |||||| ! ! |||:!:!:!::!||| yrTyrSerLeuIleValHisLysAlaAspIleArgGluCysValArgArgIleGluAr 217410 : ATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACG : 217466 116 : aAspTrpAsnIleIleThrLysLysGlnAspGlnGlnValMetLeuLysAsnAlaLys : 134 !||||||!..! !:!!! ! :!!:!!|||::!:!!!.!|||:!! !||||||!!. gAspTrpArgAsnValArgCysGluLysAspArgGluAlaMetIleValAsnAlaAsn 217467 : GGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAAT : 217523 135 : IleGlyArgTyrValAlaValPheCysThrValPheLeuGlnGlyGlyValPheCysT : 154 .!!|||||| ! :!!!.!:!!.!!|||||| !!|||:!! ! .!!||| PheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheValPheT 217524 : TTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcgtttttt : 217583 155 : hrCysLeuAlaLeuGlyAlaPheLysLysThrIleLysValAspAsnGluThrValAs : 173 ::!|||:!! ! ! ! ! !! !||| ! !!!:|||! !!.!:!!!. yrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuTh 217584 : attacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTAC : 217640 174 : nIleTyrAsnLeuProCysProAlaTyrAsnMetProValAspThr<-><->AsnPro : 190 !.!! ! ||| !! !||| ! !!. !:!!|||||| !.!||| rPheIleProLeuValPheProPheThrLysTyrIleIleAspThrArgTyrThrPro 217641 : CTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCT : 217697 191 : ThrHisAspIleIleLeuGlyThrGlnLeuLeuSerAlaPheIleCysSerSerSerT : 210 |||:!!!!:|||:!:!!! ! !||||||:!!:!!!.! !:!: !.!!! !| ThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleT 217698 : ACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCA : 217757 211 : hrAlaGlyAlaPheSerPheValAlaIleCysAlaSerHisAlaLeuGlyGlnLeuAs : 229 ||:!!!.!|||! !|||!!.!.!||| !! !||| !||||||! !||||||:!!.! hrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGl 217758 : CGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGA : 217814 230 : nLeuMetValIleTrpIleAsnGluTyrValAsnArgProLysLysLeuAsnAsnAsn : 248 .:!!:!!:!!! !|||:!:.!..!.! :!!:!! !! ! ! ! :!!!:!:!!!.! uValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgAlaAspMetSerAspThr 217815 : GGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGAGCGGATATGAGCGATACT : 217871 249 : AlaTyrIleAsnLysIleGlyIleIleValGluHisHisLeuArgIleLeuSerPheI : 268 !.! !..!!:!|||!.!! !||||||...!!.|||:!!|||||||||!.!! !: Val---AspGlyArgIleAlaSerIleValSerGlnHisValArgIleLeuLysCysV 217872 : GTG---GATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTAAAGTGTG : 217928 269 : leAlaArgValGluHisValMetSerProIleCysPheMetGluMetIle{Ly} >> : 285 !! ! !:!!! !! ! |||! ! !! !!::.!.:!! !!!:{||} alArg***IleValGlyGluCysSerLeuCysPheTrpPheGlnGlyMet{Ly}-+ 217929 : TAAGATAGATCGTTGGTGAATGCTCGCTTTGTTTTTGGTTTCAGGGGATG{AA}tt.. : 217983 286 : >> Target Intron 1 >>>> {s}CysMetValGlyIleCysMetProIleTyr : 295 1305 bp {|} ::: ::: ::: ::: ++{s}LysTyrIleTyrValAsnLeuTyrLysPhe 217984 : .......................ag{a}aaatatatttacgttaatttgtataaattt : 219314 296 : TyrIleLeuMetGluTrpSerGluHisAsnIleGlnAsnLeuThrValTyrValMetI : 315 !||||||!.!..!:!!:!!:!! !!:! !..!..!|||:!!!!:: GluTyrGln***GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleL 219315 : gaatatcaatAGGAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTC : 219374 316 : leIleIleSerMetThrTyrAsnIlePheLeuValCysTyrIleGlyGluIleIleTh : 334 !!:!!||||||:!:|||:::|||||||||::: ||||||||||||||||||:!!.! euLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAl 219375 : TACTTATATCCCTcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGC : 219431 335 : rGluGlu : 336 !|||:!: aGluGln 219432 : TGAACAg : 219439 vulgar: AmOr49 18 336 . KQ414889.1 217177 219439 + 424 M 170 510 G 0 6 M 61 183 G 1 0 M 34 102 S 0 2 5 0 2 I 0 1301 3 0 2 S 1 1 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217178 219439 424 + . gene_id 8 ; sequence AmOr49 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217178 217980 . + . KQ414889.1 exonerate:protein2genome:local exon 217178 217980 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 217981 217982 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 217981 219285 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219284 219285 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219286 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219286 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217178 219439 424 + . alignment_id 8 ; Query AmOr49 ; Align 217178 19 510 ; Align 217694 189 183 ; Align 217877 251 102 ; Align 219287 286 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 417 Query range: 17 -> 345 Target range: 284523 -> 287016 18 : TyrSerIleGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProAlaSerP : 37 ||||||:!!|||.!.|||||||||.!!|||||||||||||||!.!|||||| !|||. TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 38 : heTyrLysSerArgIleGluLysIleValSerLysIleLeuIleValIleCysTrpIl : 56 !!! ! !!!!! !:!:||||||||| !||| !:!!||| :!!||| !!!! .! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 57 : eSerSerLeuPheThrLeuIleProGlyValLeuHisPhePheLeuGluLysGlu<-> : 75 ! !! ! !||| !|||:!!||| !!!.!||| ! ! |||!!:||| eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 76 : AspIleTyrValLysLeuLysIleLeuGlyProLeuThrHisTrpLeuValGlyGlyP : 94 |||:!! !!..!|||:!!|||!!::!!|||||||||!:! !!! :!!:!!!.!!.!. AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 95 : heAsnTyrAlaValLeuLeuLeuArgLysAspAspIleTyrTyrCysIleLysGlnIl : 113 !!!!.||| !:!!|||:!!! !||| ! ! ! ||| ! ! |||:!:|||.!.|| leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 114 : eCysAlaAspTrpAsnIleIle<-><-><->ThrLysLysGlnAspGlnGlnValMet : 129 | !!|||||||||::!:!!! !:::::::::::::::::::::::||| eArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMet 284813 : TCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTG : 284869 130 : LeuLysAsnAlaLysIleGlyArgTyrValAlaValPheCysThrValPheLeu<->G : 148 ! ! !:!|||!:!|||||||||! !:!!|||:!!||||||.!!! !|||:!! . ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrS 284870 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATT : 284929 149 : lnGlyGlyValPheCysThrCysLeuAlaLeuGlyAlaPheLysLysThrIleLysVa : 167 ..|||||| !!|||! !||| :!! !! ! !..! !:::||| ! :! erGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIl 284930 : CCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCAT : 284986 168 : lAspAsnGluThrValAsnIleTyrAsnLeuProCysProAlaTyrAsnMetProVal : 186 !|||||||||||||||!.. ! ! !!!||| ! ! ! ! !:!: ! ! eAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 284987 : CGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCG : 285043 187 : AspThrAsnProThrHisAspIleIleLeuGlyThrGlnLeuLeuSerAlaPheIleC : 206 !|||!:!|||:!! !!!:|||:!:! ! !! !|||! !|||:!!||||||:!! ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValI 285044 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTA : 285103 207 : ysSerSerSerThrAlaGlyAlaPheSerPheValAlaIleCysAlaSerHisAlaLe : 225 ! !||| !|||!.!||||||! !|||!!.!.!|||:!:! !!.!! !|||!.!! leTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCy 285104 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTG : 285160 226 : uGlyGlnLeuAsnLeuMetValIleTrpIleAsnGluTyrValAsnArgProLys<-> : 244 !||||||!!!!..:!!:!:|||! ! !:!::!!:!! !|||:!! !! !||| sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLysGly 285161 : TGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGG : 285217 245 : LysLeuAsnAsnAsnAlaTyrIleAsnLysIleGlyIleIleValGluHisHisLeuA : 263 !:! !... !:!.!!:!! !.!.::!:!:||| !|||:!!||||||||||||! ArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuL 285218 : AGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGA : 285277 264 : rgIleLeu{Se} >>>> Target Intron 1 >>>> {r}PheIleAlaArgVa : 271 :!||||||{.!} 1494 bp {!} ||| ! !.. ysIleLeu{Gl}++ -+{y}---IleLeuPheTh 285278 : AGATACTG{GG}gt.........................gg{G}---ATATTATTTAC : 286792 272 : lGluHisValMetSerProIleCysPheMetGluMetIleLysCysMetValGlyIle : 290 !!!: ! !! ..! !:!:|||!:! .!.! :!!! !...!!::!!!.!.!! rAspGlyAsnArgAspAspLeuCysTyrTyrHisThrValMetAlaIleIleAlaPhe 286793 : TGACGGTAACAGAGACGACTTGTGTTATTACCATACTGTAATGGCAATAATTGCATTC : 286849 291 : CysMetProIleTyrTyrIleLeuMetGluTrpSerGluHisAsnIleGlnAsnLeuT : 310 !||| ! ! ! :!!!!! !||||||..!:!! !.!.! ! !... !! ValMetTyrSerLeuSerValPhe***GluTrpGluGlnSerGluThrIleGlyThrI 286850 : GTCATGTACTCGTTGTCAGTTTTCTAGGAATGGGAGCAAAGTGAAACTATAGGAACGA : 286909 311 : hrValTyrValMetIleIleIleSerMetThrTyrAsnIlePheLeuValCysTyrIl : 329 !..!||| !! !:!::!::!!|||.!.|||!:!|||:!!|||:!!:!!|||||||| leThrTyrCysThrLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIl 286910 : TCACGTATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACAT : 286966 330 : eGlyGluIleIleThrGluGluCysLysLysIleGlyAspIleValTyr : 345 ||||||||||:!!:!!|||::: ||| ...! :!!||| eGlyGluIleLeuSerGluGlnValPhePheIleThrSerThrIleTyr 286967 : CGGTGAAATTCTCTCCGAACaggtatttttcattacttcaACGATCTAT : 287016 vulgar: AmOr49 17 345 . KQ414889.1 284523 287016 + 417 M 57 171 G 0 3 M 46 138 G 0 9 M 27 81 G 0 3 M 96 288 G 0 3 M 22 66 S 0 2 5 0 2 I 0 1490 3 0 2 S 1 1 G 1 0 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 287016 417 + . gene_id 9 ; sequence AmOr49 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284524 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 285287 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286780 286781 . + . intron_id 0 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 286782 287016 . + . KQ414889.1 exonerate:protein2genome:local exon 286782 287016 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284524 287016 417 + . alignment_id 9 ; Query AmOr49 ; Align 284524 18 171 ; Align 284698 75 138 ; Align 284845 121 81 ; Align 284929 148 288 ; Align 285220 244 66 ; Align 286783 268 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 380 Query range: 5 -> 268 Target range: 221342 -> 222134 6 : AlaLysIleGluLysLysPheGlyAspLeuSerGluTyrSerIleGlnPheAsnArgT : 25 .!!::::!!||| ! ! !:! ! ! !:!!! |||:!:|||!!.!:!|||| ThrArgValGluTyrAspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgT 221343 : ACTCGTGTTGAATACGATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTT : 221400 26 : rpIleLeuLysProIleGlyAlaTrpProAlaSerPheTyrLysSerArgIleGluLy : 44 ||||||||||||||||||||!.!|||||| !||| ! !!! |||! !:!!|||!: rpIleLeuLysProIleGlyValTrpProAsnSerAlaAsnIleSerThrValGluAr 221401 : GGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAG : 221457 45 : sIleValSerLysIleLeuIleValIleCysTrpIleSerSerLeuPheThrLeuIle : 63 ! !:!!! ! !:!::!!! !|||:!!|||!::! ! !! ! !||| !|||:!! gTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLeuIleThrPheLeuLeuVal 221458 : ATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTA : 221514 64 : ProGlyValLeuHisPhePheLeuGluLysGluAspIleTyrValLysLeuLysIleL : 83 ||| !! !|||:!! ! .!!|||||| !||||||:!!||| !!:!:!!|||:!:| ProCysSerLeuTyrValIleLeuGluValGluAspValTyrAsnArgIleLysLeuL 221515 : CCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGT : 221574 84 : euGlyProLeuThrHisTrpLeuValGlyGlyPheAsnTyrAlaValLeuLeuLeuAr : 102 |||||||||||!:! !!! :!!:!!!.! !.!.!!.||| !:!!|||:!!||| euGlyProLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTy 221575 : TGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTA : 221631 103 : gLysAspAspIleTyrTyrCysIleLysGlnIleCysAlaAspTrpAsnIleIleThr : 121 !:!!:!!|||||| ! ! ||||||:!!!::||| !||||||!!.! !|||||| rGluAsnAspIleArgGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThr 221632 : CGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACT : 221688 122 : LysLysGlnAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaV : 141 ! ...:!!|||:!!.!.:!!|||:!!:!!||||||! .!!|||||| :!! !: TyrSerLysAspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleM 221689 : TACTCCAAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCA : 221748 142 : alPheCysThrValPheLeuGlnGlyGlyValPheCysThrCysLeuAlaLeuGlyAl : 160 !!.!!|||||| !!|||:!! ! .!!||| ::!|||:!! ! etIleCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPh 221749 : TGATCTGCACATTTTTCATGTACAGTggtttcgttttttattacatAGCCATACCGTT : 221805 161 : aPheLysLysThrIleLysValAspAsnGluThrValAsnIleTyrAsnLeuProCys : 179 ! ! ! ! !||| !.!.!.:!! ...|||...... :!! !! ! eSerValGlyLysIleProAlaGlnAspValAsnValThrPheIleProMetValPhe 221806 : TAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTT : 221862 180 : ProAlaTyrAsnMetProValAspThr<-><->AsnProThrHisAspIleIleLeuG : 197 ||| !! !...!. !||||||||| !:!|||..!:!!!!:|||:!:!!!. ProPheSerArgPheIleValAspThrArgTyrSerProValAsnGluIleLeuPheS 221863 : CCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCT : 221922 198 : lyThrGlnLeuLeuSerAlaPheIleCysSerSerSerThrAlaGlyAlaPheSerPh : 216 .! !|||:!!:!!:!!!.! !:!: !|||! !|||:!!!.!|||! !|||!! erLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLe 221923 : CGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTT : 221979 217 : eValAlaIleCysAlaSerHisAlaLeuGlyGlnLeuAsnLeuMetValIleTrpIle : 235 .||||||!!:! !||| !||||||! !||||||:!!.!.:!!:!!:!!! !|||:!: uValAlaMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeu 221980 : GGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTG : 222036 236 : AsnGluTyrValAsnArgProLysLysLeuAsnAsnAsnAlaTyrIleAsnLysIleG : 255 !!..!.! :!!||| !!! ! ! ! :!! !||||||!.! !!..!:!|||! LysHisLeuIleAsnGlyArgAlaAspMetCysAsnAsnVal---AspArgArgIleA 222037 : AAACATTTGATCAACGGCCGGGCGGATATGTGTAACAACGTG---GATAGGAGAATAG : 222093 256 : lyIleIleValGluHisHisLeuArgIleLeuSerPheIle : 268 .!! ||||||.!.!!.|||:!!|||||||||..!!:!:!! laLysIleValAsnGlnHisValArgIleLeuGlnTyrVal 222094 : CGAAGATTGTGAATCAACACGTTCGAATATTGCAGTATGTA : 222134 vulgar: AmOr49 5 268 . KQ414889.1 221342 222134 + 380 M 183 549 G 0 6 M 61 183 G 1 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221343 222134 380 + . gene_id 10 ; sequence AmOr49 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221343 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221343 222134 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221343 222134 380 + . alignment_id 10 ; Query AmOr49 ; Align 221343 6 549 ; Align 221898 189 183 ; Align 222081 251 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 339 Query range: 293 -> 404 Target range: 258246 -> 258738 294 : IleTyrTyrIleLeuMetGluTrpSerGluHisAsnIleGlnAsnLeuThrValTyrV : 313 |||:::||| ......||||||||| !!..:::||||||||||||::: ||| IlePheTyrTyrPheGlnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrP 258247 : attttttattattttcaggaATGGTCTACGCaagatattcaaaatttgagttcgtaCT : 258304 314 : alMetIleIleIleSerMetThrTyrAsnIlePheLeuValCysTyrIleGlyGluIl : 332 !!||||||:!!||||||:::::::::|||||||||::::::||||||||||||||||| heMetIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIl 258305 : TTATGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAAT : 258361 333 : eIleThrGluGlu >>>> Target Intron 1 >>>> CysLysLysIleGlyA : 342 |:!!||||||:!! 90 bp |||||||||:!!|||| eLeuThrGluGln++ ++CysLysLysValGlyA 258362 : ATTAACAGAACAGgt.........................agTGCAAGAAAGTTGGCG : 258481 343 : spIleValTyrMetThrAsnTrpTyrGluLeuSerAspLysAsnIleLeuAsnLeuMe : 361 ||:!:||||||||||||:!!|||||| ! ||| !!||||||!..||||||:!!|||!! spValValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIl 258482 : ACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAAT : 258538 362 : tMetIleIleThrArgSerSerMetAsnIleAsnMetThrAlaGlyLysMetThrAsn : 380 ::!!:!!|||.!!|||||||||:!! !:!!.!.!!:||||||||||||... ::: eLeuValIleAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePheHis 258539 : TTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcac : 258595 381 : MetSerValLeuThrPheGlyLys >>>> Target Intron 2 >>>> IleVa : 390 ||||||:!!! !||||||.!! ! 69 bp :!!:! MetSerIleTyrThrPheSerAsp++ ++ValIl 258596 : atGTCCATTTACACATTCAGCGATgt.........................agGTAAT : 258694 391 : lLysSerIlePheAlaTyrLeuAsnValLeuArgGlnIleThr : 404 !|||!!! !|||||||||||||||:!!|||||||||:!!:!! eLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnValSer 258695 : AAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGTATCG : 258738 vulgar: AmOr49 293 404 . KQ414889.1 258246 258738 + 339 M 43 129 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258247 258738 339 + . gene_id 11 ; sequence AmOr49 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 258247 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258247 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258247 258738 339 + . alignment_id 11 ; Query AmOr49 ; Align 258247 294 129 ; Align 258466 337 156 ; Align 258691 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 332 Query range: 299 -> 404 Target range: 272836 -> 273302 300 : GluTrpSerGluHisAsnIleGlnAsnLeuThrValTyrValMetIleIleIleSerM : 319 ||||||!!!!!:|||:!!.!!|||!:!||||||..!||| !!||||||:!!||||||| GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 320 : etThrTyrAsnIlePheLeuValCysTyrIleGlyGluIleIleThrGluGlu >>> : 337 |||||:::|||||||||:::|||||||||||||||||||||:!!||||||..! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 338 : > Target Intron 1 >>>> CysLysLysIleGlyAspIleValTyrMetThrA : 348 70 bp |||||||||||||||!!::!!||||||||||||| ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 349 : snTrpTyrGluLeuSerAspLysAsnIleLeuAsnLeuMetMetIleIleThrArgSe : 367 |||||||| ! ||| !!! !|||:!!||||||:!!|||!!::!!||||||:!!|||!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 368 : rSerMetAsnIleAsnMetThrAlaGlyLysMetThrAsnMetSerValLeuThrPhe : 386 !|||:!: |||!!.!!:|||||||||!:!!!:..! !|||||||||! !|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 387 : GlyLys >>>> Target Intron 2 >>>> IleValLysSerIlePheAlaTy : 396 ||| ! 81 bp ::::!!|||||| |||||||| GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 397 : rLeuAsnValLeuArgGlnIleThr : 404 |||||||:!!|||||||||! ||| rLeuAsnMetLeuArgGlnThrThr 273277 : CTTAAATATGCTACGACAAACGACA : 273302 vulgar: AmOr49 299 404 . KQ414889.1 272836 273302 + 332 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273302 332 + . gene_id 12 ; sequence AmOr49 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273302 332 + . alignment_id 12 ; Query AmOr49 ; Align 272837 300 111 ; Align 273018 337 156 ; Align 273255 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 332 Query range: 17 -> 265 Target range: 278576 -> 279338 18 : TyrSerIleGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProAlaSerP : 37 ||||||:!!|||.!.|||||||||.!!|||||||||||||||!.!|||||| !|||. TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 38 : heTyrLysSerArgIleGluLysIleValSerLysIleLeuIleValIleCysTrpIl : 56 !!! ! !!!!! !:!:||||||||| !||| !:!!||| :!!||| !!!! .! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 57 : eSerSerLeuPheThrLeuIleProGlyValLeuHisPhePheLeuGluLysGlu<-> : 75 ! !! ! !||| !|||:!!||| !!!.!||| ! ! |||!!:||| eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 76 : AspIleTyrValLysLeuLysIleLeuGlyProLeuThrHisTrpLeuValGlyGlyP : 94 |||:!! !!..!|||:!!|||!!::!!|||||||||!:! !!! !:!!!.! !. AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 95 : heAsnTyrAlaValLeuLeuLeuArgLysAspAspIleTyrTyrCysIleLysGlnIl : 113 !!!!.||| !:!!|||:!!! !||| ! ! ! ||| ! ! |||:!:!!..!.|| leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 114 : eCysAlaAspTrpAsnIle<-><-><->IleThrLysLysGlnAspGlnGlnValMet : 129 | !!.!!||||||::!:!! ! :::::::::::::::::::::||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 130 : LeuLysAsnAlaLysIleGlyArgTyrValAlaValPheCysThrValPheLeu<->G : 148 ! ! !:!|||!:!|||||||||! !:!!|||:!!||| !!.!!! !|||:!! . ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 149 : lnGlyGlyValPheCysThrCysLeuAlaLeuGlyAlaPheLysLysThrIleLysVa : 167 ..||||||||||||! !|||..!:!! !! ! ! ! !:::||| ! :! erGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIl 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCAT : 279039 168 : lAspAsnGluThrValAsnIleTyrAsnLeuProCysProAlaTyrAsnMetProVal : 186 !|||||||||||||||!.. ! ! !!!||| ! ! ! ! !:!: ! ! eAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 279040 : CGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCG : 279096 187 : AspThrAsnProThrHisAspIleIleLeuGlyThrGlnLeuLeuSerAlaPheIleC : 206 !|||!:!|||:!! !!!:|||:!:! ! !! !|||! !|||:!!||||||:!!! ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValL 279097 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTT : 279156 207 : ysSerSerSerThrAlaGlyAlaPheSerPheValAlaIleCysAlaSerHisAlaLe : 225 ! !||| !|||!.!||||||! !|||!!.:!!|||:!:! !!.!! !|||!.!! euTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCy 279157 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTG : 279213 226 : uGlyGlnLeuAsnLeuMetValIleTrpIleAsnGluTyrValAsnArgProLys<-> : 244 !||||||!!!!..:!!:!:|||! ! !:!::!!:!! !:!!:!! !! !||| sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLysGly 279214 : TGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGG : 279270 245 : LysLeuAsnAsnAsnAlaTyrIleAsnLysIleGlyIleIleValGluHisHisLeuA : 263 !:! !!:! !:!.!!:!! !.!.::!:!:||| !|||:!!||||||||||||! ArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuL 279271 : AGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGA : 279330 264 : rgIleLeu : 265 :!|||||| ysIleLeu 279331 : AGATACTG : 279338 vulgar: AmOr49 17 265 . KQ414889.1 278576 279338 + 332 M 57 171 G 0 3 M 45 135 G 0 9 M 28 84 G 0 3 M 96 288 G 0 3 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 279338 332 + . gene_id 13 ; sequence AmOr49 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278577 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279338 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278577 279338 332 + . alignment_id 13 ; Query AmOr49 ; Align 278577 18 171 ; Align 278751 75 135 ; Align 278895 120 84 ; Align 278982 148 288 ; Align 279273 244 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 318 Query range: 7 -> 265 Target range: 208182 -> 208959 8 : IleGluLysLysPheGlyAspLeuSerGluTyrSerIleGlnPheAsnArgTrpIleL : 27 :!!.!.!:!!!.!:! !:!! ! !...!:!!:!:!!!::.!.||| !|||! | LeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrL 208183 : CTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGT : 208240 28 : euLysProIleGlyAlaTrpProAlaSerPheTyrLysSerArgIleGluLysIleVa : 46 ||||| !||||||:!!|||||| !|||.!. !!:::||| !!:!!|||!!.! ! euLysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGl 208241 : TGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCA : 208297 47 : lSerLysIleLeuIleValIleCysTrpIleSerSerLeuPheThrLeuIleProGly : 65 ! !! :!!|||! !|||:!! !! !! ! ! !|||! !:!!|||||| ! nHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThr 208298 : GCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACC : 208354 66 : ValLeuHisPhePheLeuGluLysGluAspIleTyrValLysLeuLysIleLeuGlyP : 85 ! !:!! ! .!!|||! ! ||||||.!!|||! !:!!|||||||||! !.!! GlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerA 208355 : GGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCG : 208414 86 : roLeuThrHisTrpLeuValGlyGlyPheAsnTyrAlaValLeuLeuLeuArgLysAs : 104 !!|||!:! !!:::!!:!!!.! ! !!.|||!.!:!!:!! !:!!|||:!!! laLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGl 208415 : CTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGG : 208471 105 : pAspIleTyrTyrCysIleLysGlnIleCysAlaAspTrpAsnIleIleThrLysLys : 123 !|||||| ! |||:!!:!! ! :!! |||||||||!..! !:!: ! ! :!! yAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGlu 208472 : TGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAG : 208528 124 : GlnAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaValPheC : 143 :!!|||::!:!!:!!|||||| ! ||||||!...!!!.!||| ! :!! !|||.!.| GluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleC 208529 : GAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATAT : 208588 144 : ysThrValPheLeuGlnGlyGlyValPheCysThrCysLeuAlaLeuGlyAlaPheLy : 162 || !!.!|||:!! ! |||||||||... :!!|||||| ! ! !:: ysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrAr 208589 : GCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCG : 208645 163 : sLysThrIleLysValAspAsnGluThrValAsnIleTyrAsnLeu<-><->ProCys : 179 ! ! ! !:!! ! !!!:..!! !.!:!!!.. ! !..||| ||| ! gAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProVal 208646 : AGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTT : 208702 180 : ProAlaTyrAsnMetProValAspThrAsnProThrHisAspIleIleLeuGlyThrG : 199 ||| !!:!! !:!! !||| !!:!|||..!:!!!!:|||.!!! ! !..!| ProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValG 208703 : CCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTAC : 208762 200 : lnLeuLeuSerAlaPheIleCysSerSerSerThrAlaGlyAlaPheSerPheValAl : 218 |||||||||||!.!|||:!!..! !!:!! !|||!.!||||||! !.!!!!.!.!|| lnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAl 208763 : AATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGC : 208819 219 : aIleCysAlaSerHisAlaLeuGlyGlnLeuAsnLeuMetValIleTrpIleAsnGlu : 237 |:!: !|||! !||||||! !|||||||||.!.:!!:!!:!! !|||!!:.!.:!! aLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLys 208820 : GCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAG : 208876 238 : TyrValAsnArgProLysLysLeuAsnAsnAsnAlaTyrIleAsnLysIleGlyIleI : 257 ! |||:!! !!! !:!! ! !.!.!!.||| ! !.!.!:!:!:!.!! !| LeuValAspGlyArgGluAspGluGluLysAsn---LeuAspGlnArgLeuAlaAsnI 208877 : TTGGTCGATGGACGGGAGGACGAGGAGAAGAAT---TTGGATCAGAGGTTGGCTAATA : 208933 258 : leValGluHisHisLeuArgIleLeu : 265 ||||||||!!.|||:!!|||:!::!! leValGluGlnHisValArgValIle 208934 : TCGTGGAGCAGCATGTTCGAGTGATC : 208959 vulgar: AmOr49 7 265 . KQ414889.1 208182 208959 + 318 M 170 510 G 0 6 M 71 213 G 1 0 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208183 208959 318 + . gene_id 14 ; sequence AmOr49 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208183 208959 . + . KQ414889.1 exonerate:protein2genome:local exon 208183 208959 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208183 208959 318 + . alignment_id 14 ; Query AmOr49 ; Align 208183 8 510 ; Align 208699 178 213 ; Align 208912 250 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 317 Query range: 18 -> 268 Target range: 212875 -> 213628 19 : SerIleGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProAlaSerPheT : 38 |||||| !!::|||||||||:!!|||||||||! ||| !||||||! !!.!! !| SerIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspLysSerT 212876 : agtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCT : 212933 39 : yrLysSerArgIleGluLysIleValSerLysIleLeuIleValIleCysTrpIleSe : 57 || |||! !|||||||||! !:!!:!!::!:!::!!! !..!:!!|||!:: !! yrValSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLe 212934 : ACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTT : 212990 58 : rSerLeuPheThrLeuIleProGlyValLeuHisPhePheLeuGluLysGluAspIle : 76 !! ! !!:! !:!!|||||| !! !|||:!! ! ||||||!!: !|||:::||| uIleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGluAsnIle 212991 : GATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatata : 213047 77 : TyrValLysLeuLysIleLeuGlyProLeuThrHisTrpLeuValGlyGlyPheAsnT : 96 ::: ::::!!:!!:!:!!!||| !!!!.!! !!! :!!!.!!.! !!::!!.| PheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysT 213048 : tttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGT : 213107 97 : yrAlaValLeuLeuLeuArgLysAspAspIleTyrTyrCysIleLysGlnIleCysAl : 115 || ! !|||:!!|||!.! ||||||||| ! |||:!!:!!!!.!!: yrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMetLysTy 213108 : ATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATA : 213164 116 : aAspTrpAsnIleIleThrLysLysGlnAspGlnGlnValMetLeuLysAsnAlaLys : 134 !||||||!!.! !|||||| ! :!!:!!|||:!!:!!:!!||| ! !||||||!.. rAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSer 213165 : TGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGC : 213221 135 : IleGlyArgTyrValAlaValPheCysThrValPheLeuGlnGlyGly<-><->ValP : 152 .!!|||!:! :!!!.!..!.!!|||.!! !!|||:!! ! !||| !!! PheGlyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheThrPheT 213222 : TTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTT : 213281 153 : heCysThrCysLeuAlaLeuGlyAlaPheLysLysThrIleLysValAspAsnGluTh : 171 :!! ! ! !:!! !!:!!.!!||| !|||! !..! :!!! ! !|||! !|| yrPheLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAsnValTh 213282 : ATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGAC : 213338 172 : rValAsnIleTyrAsnLeuProCysProAlaTyrAsnMetProValAspThrAsnPro : 190 | !!!.. ! :!!||| ! !! !!:!! !:!: !||| !!:!||| rPheArgGlnMetValValProValSerArgPheIleValAspValArgTyrSerPro 213339 : ATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCT : 213395 191 : ThrHisAspIleIleLeuGlyThrGlnLeuLeuSerAlaPheIleCysSerSerSerT : 210 ..!:!!!!:|||.!!!!! !! !|||:!!:!!:!!!.! ! :!: ! !:!!! !. ValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleA 213396 : GTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTG : 213455 211 : hrAlaGlyAlaPheSerPheValAlaIleCysAlaSerHisAlaLeuGlyGlnLeuAs : 229 !!!.!! !|||! !|||!!.!.!|||:!:! !||| !||||||! !||||||:!!.. laValValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGl 213456 : CGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGG : 213512 230 : nLeuMetValIleTrpIleAsnGluTyrValAsnArgProLysLysLeuAsnAsnAsn : 248 !:!!:!!:!!! !|||:!:.!..!.! :!!:!! !! !:!! ! :!!!:!!!.||| yIleLeuMetSerTrpLeuGluHisLeuIleAspGlyArgGluAspMetSerLysAsn 213513 : CATTTTGATGAGCTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGCAAGAAT : 213569 249 : AlaTyrIleAsnLysIleGlyIleIleValGluHisHisLeuArgIleLeuSerPheI : 268 !.! !:!!!:!|||!.!:!!||||||.!.!!.|||:!!|||||||||!.!!::: Val---AspAspArgIleAlaValIleValAsnGlnHisValArgIleLeuLysTrpV 213570 : GTG---GACGACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTGAAGTGGG : 213626 269 : le : 268 !: al 213627 : TG : 213628 vulgar: AmOr49 18 268 . KQ414889.1 212875 213628 + 317 M 132 396 G 0 6 M 99 297 G 1 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212876 213628 317 + . gene_id 15 ; sequence AmOr49 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212876 213628 . + . KQ414889.1 exonerate:protein2genome:local exon 212876 213628 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212876 213628 317 + . alignment_id 15 ; Query AmOr49 ; Align 212876 19 396 ; Align 213278 151 297 ; Align 213575 251 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 313 Query range: 8 -> 268 Target range: 226903 -> 227686 9 : GluLysLysPheGlyAspLeuSerGluTyrSerIleGlnPheAsnArgTrpIleLeuL : 28 |||!!. ! !:! !!!:! !! !.!. |||||||||!!.|||||||||:!:|||| GluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuL 226904 : GAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGA : 226961 29 : ysProIleGlyAlaTrpProAlaSerPheTyrLysSerArgIleGluLysIleValSe : 47 |||||:!!||| !||||||:!!||| ! ! !..|||||||||! !!:! ! !!|| ysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSe 226962 : AACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTC : 227018 48 : rLysIleLeuIleValIleCysTrpIleSerSerLeuPheThrLeuIleProGlyVal : 66 | !:!::!! ! !!:!!|||!:: !! ! !||| !|||:!! !!.!!! ! rTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGly 227019 : CTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGC : 227075 67 : LeuHisPhePheLeuGluLysGluAspIleTyrValLysLeuLysIleLeuGlyProL : 86 |||:!! ! !!|||||| !:!!! ! !||| !! !||||||!!::!!||||||: LeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProM 227076 : TTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGA : 227135 87 : euThrHisTrpLeuValGlyGlyPheAsnTyrAlaValLeuLeuLeuArgLysAspAs : 105 !!:!! !!:: !:!!..! !.!!!!.|||:!!:!!||| !!!!!.!:!!||||| etSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAs 227136 : TGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGA : 227192 106 : pIleTyrTyrCysIleLysGlnIleCysAlaAspTrpAsnIleIleThrLysLysGln : 124 |||| ! ! |||:!!:!!!:!||| !||||||!!.! !|||! ! ! !:!! pIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGlu 227193 : CATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAG : 227249 125 : AspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaValPheCysT : 144 |||::!.!.||||||:!!! ! !!||| ! !|||||| ! :!! !..!.!!|||| AspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysT 227250 : GACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCA : 227309 145 : hrValPheLeuGlnGlyGly<-><->ValPheCysThrCysLeuAlaLeuGlyAlaPh : 161 || !!|||:!! ...... ||| ! ! !:!! !!:!!..!||| hrPhePheValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGl 227310 : CGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGG : 227366 162 : eLysLysThrIleLysValAspAsnGluThrValAsnIleTyrAsnLeuProCysPro : 180 !.. .!!! :!!! !! |||.!.!:! !! ! !!!|||! !||| ySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPhePro 227367 : AAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCA : 227423 181 : AlaTyrAsnMetProValAspThrAsnProThrHisAspIleIleLeuGlyThrGlnL : 200 ! !! ! !||| ! !!:!||| !:!!!!:|||.!!!!!..!..!|||! LysIleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnP 227424 : AAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAAT : 227483 201 : euLeuSerAlaPheIleCysSerSerSerThrAlaGlyAlaPheSerPheValAlaIl : 219 !!:!!!!!!.!.!!:!:! !.!! !|||:!!!.!|||! !|||.!.!.!|||:! heValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLe 227484 : TTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCT : 227540 220 : eCysAlaSerHisAlaLeuGlyGlnLeuAsnLeuMetValIleTrpIleAsnGluTyr : 238 : !||| !||||||! !||||||:!!.!.:!!:!!||| !|||:!:....!.! uLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeu 227541 : GCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTG : 227597 239 : ValAsnArgProLysLysLeuAsnAsnAsnAlaTyrIleAsnLysIleGlyIleIleV : 258 :!!:!! !! ! ! ! :!! !:!!!..!! !:!!!:!|||!.!! !|||| IleAspGlyArgAlaAspMet---SerLysThrLeuAspAspArgIleAlaSerIleV 227598 : ATCGACGGCAGAGCGGATATG---AGCAAAACACTGGATGATAGAATCGCTAGCATCG : 227654 259 : alGluHisHisLeuArgIleLeuSerPheIle : 268 || ||||||:!!|||||||||!.!! !:!! alThrHisHisValArgIleLeuLysCysVal 227655 : TCACTCACCACGTTCGAATATTGAAGTGTGTA : 227686 vulgar: AmOr49 8 268 . KQ414889.1 226903 227686 + 313 M 142 426 G 0 6 M 95 285 G 1 0 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226904 227686 313 + . gene_id 16 ; sequence AmOr49 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226904 227686 . + . KQ414889.1 exonerate:protein2genome:local exon 226904 227686 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226904 227686 313 + . alignment_id 16 ; Query AmOr49 ; Align 226904 9 426 ; Align 227336 151 285 ; Align 227621 247 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 261 Query range: 299 -> 404 Target range: 254071 -> 254567 300 : GluTrpSerGluHisAsnIleGlnAsnLeuThrValTyrValMetIleIleIleSerM : 319 ||||||!!!||| !:!! !|||! ||| !..!|||:!!:!:! !:!!:!!:!!: GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaV 254072 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTG : 254129 320 : etThrTyrAsnIlePheLeuValCysTyrIleGlyGluIleIleThrGluGlu >>> : 337 !:..! ||| ||||||:::|||||||||.!!!!:! :!:||||||:!! alValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 254130 : TTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt... : 254185 338 : > Target Intron 1 >>>> CysLysLysIleGlyAspIleValTyrMetThrA : 348 92 bp ||| !|||:!!|||!!::!:||||||||||||: ++CysLeuLysValGlyGluValValTyrMetThrA 254186 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 254308 349 : snTrpTyrGluLeuSerAspLysAsnIleLeuAsnLeuMetMetIleIleThrArgSe : 367 !!|||||| ! ||| !!.!.!:!!..||||||:!!|||!!::!!|||||||||||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSe 254309 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATC : 254365 368 : rSerMetAsnIleAsnMetThrAlaGlyLysMetThrAsnMetSerValLeuThrPhe : 386 |!:!:!! !:!!.!.!!:||||||||||||::: :::||||||:!!! !|||||| rAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPhe 254366 : GAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTC : 254422 387 : GlyLys >>>> Target Intron 2 >>>> IleValLysSerIlePheAlaTy : 396 ||| ! 89 bp :!!||||||!!! !|||||||| GlyAsp++ ++ValValLysThrGlyPheAlaTy 254423 : GGCGATgt.........................agGTAGTAAAAACAGGATTCGCCTA : 254541 397 : rLeuAsnValLeuArgGlnIleThr : 404 |||||||:!!||| !!|||!!::!! rLeuAsnMetLeuCysGlnMetSer 254542 : CTTGAATATGCTTTGTCAAATGTCC : 254567 vulgar: AmOr49 299 404 . KQ414889.1 254071 254567 + 261 M 37 111 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254072 254567 261 + . gene_id 17 ; sequence AmOr49 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254072 254182 . + . KQ414889.1 exonerate:protein2genome:local exon 254072 254182 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254183 254184 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254183 254274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254273 254274 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254275 254430 . + . KQ414889.1 exonerate:protein2genome:local exon 254275 254430 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254431 254432 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254431 254519 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 254518 254519 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254520 254567 . + . KQ414889.1 exonerate:protein2genome:local exon 254520 254567 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254072 254567 261 + . alignment_id 17 ; Query AmOr49 ; Align 254072 300 111 ; Align 254275 337 156 ; Align 254520 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 255 Query range: 16 -> 265 Target range: 289732 -> 290479 17 : GluTyrSerIleGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProAlaS : 36 ...|||!!!.!!:!!!!. !!.!||||||||||||||||||||| !!::||| ! ArgTyrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrProPheV 289733 : CGTTACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCG : 289790 37 : erPheTyrLys<->SerArgIleGluLysIleValSerLysIleLeuIleValIleCy : 54 !||| !::: |||||| !|||::!! !.!||| !:!:||||||:!!:!!|| alPheSerArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLeuValCy 289791 : TCTTTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATG : 289847 55 : sTrpIleSerSerLeuPheThrLeuIleProGlyValLeuHisPhePheLeuGluLys : 73 |!! ! ! !! !|||! !:!!:!!||| ! !! !||| !!.!.!!!... ! sCysSerIleLeuGlnPheIleIleValProPheSerHisHisValLeuPheSerAsp 289848 : TTGCTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGAC : 289904 74 : GluAspIleTyrValLysLeuLysIleLeuGlyProLeuThrHisTrpLeuValGlyG : 93 .!.|||!!: !!..! :!!|||! !||||||||||||||| !!! |||..! ! AsnAspMetAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuThrThrP 289905 : AACGACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGT : 289964 94 : lyPheAsnTyrAlaValLeuLeuLeuArgLysAspAspIleTyrTyrCysIleLysGl : 112 !|||!!.|||..! !!!! !:!!!:! ...! ||| ! !|||:!:|||!! hePheLysTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysValLysHi 289965 : TCTTCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACA : 290021 113 : nIleCysAlaAspTrpAsnIleIleThrLysLysGlnAspGlnGlnValMetLeuLys : 131 .||| !||||||!!.!!::!: ! ! :!!.!. !!!:: :!!||||||!:! sIleGluArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMetLeuArg 290022 : CATCGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGA : 290078 132 : AsnAlaLysIleGlyArgTyrValAlaValPheCysThrValPheLeuGlnGlyGlyV : 151 !!!.!! !!!:.!!||| !!:!! ! !.!.|||.!!:!!|||||| ! !|||! TyrValThrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyG 290079 : TACGTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTG : 290138 152 : alPheCysThrCysLeuAlaLeuGlyAlaPheLysLysThrIleLysValAspAsnGl : 170 !.!.! ! ! ! !!.!:!! ! !|||..!|||! !! ! ! !! !|||! lyLeuSerTyrAsnThrValIleProLeuPheSerLysLysSerValAsnGlyAsnVa 290139 : GTCTGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGGTAACGT : 290195 171 : uThrValAsnIleTyrAsnLeuProCysProAlaTyrAsnMetProValAspThrAsn : 189 !|||:!!!.. ! !.!! !||| !! !! ! ! !.!. !|||.!.! !!:! lThrIleArgProLeuThrTyrProGlyTyrGluGluPhePheAspValGlnLysSer 290196 : GACTATCAGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGT : 290252 190 : ProThrHisAspIleIleLeuGlyThrGlnLeuLeuSerAlaPheIleCysSerSerS : 209 |||.!!:!!!!:|||:!!!!! !!! !!!.! !:!!! !!.!.!.||| :!!!:!! ProAlaTyrGluIleValPheCysMetHisCysValTyrValMetIleThrAlaAsnI 290253 : CCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACA : 290312 210 : erThrAlaGlyAlaPheSerPheValAlaIleCysAlaSerHisAlaLeuGlyGlnLe : 228 !||| !!.!|||!:!|||!!...!.!!|||! !|||!!!|||.!!! !||||||:! leThrMetAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGlnIl 290313 : TCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGAT : 290369 229 : uAsnLeuMetValIleTrpIleAsnGluTyrValAsnArgProLysLysLeuAsnAsn : 247 !!!.:!!.....!! !!:!:.!.!!: ..!!!.||| !! ! !|||.!.!!. eLysIleGlnThrThrArgLeuGluAspLeuThrLysArgGlyMetLeuLeuGluLys 290370 : TAAGATACAAACGACGCGGCTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAGAAG : 290426 248 : AsnAlaTyrIleAsnLysIleGlyIleIleValGluHisHisLeuArgIleLeu : 265 ...!.! ! !:!!::::!:!.!:!!:!!|||... !|||:!!..!|||||| GlyVal---SerAspArgLeuAlaValValValSerGlyHisValGluIleLeu 290427 : GGAGTG---AGTGATCGTTTGGCGGTTGTTGTGAGCGGTCACGTGGAGATCTTG : 290479 vulgar: AmOr49 16 265 . KQ414889.1 289732 290479 + 255 M 23 69 G 0 3 M 210 630 G 1 0 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289733 290479 255 + . gene_id 18 ; sequence AmOr49 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289733 290479 . + . KQ414889.1 exonerate:protein2genome:local exon 289733 290479 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 289733 290479 255 + . alignment_id 18 ; Query AmOr49 ; Align 289733 17 69 ; Align 289805 40 630 ; Align 290435 251 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 247 Query range: 16 -> 264 Target range: 204233 -> 204974 17 : GluTyrSerIleGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProAlaS : 36 ..!|||:!!! !!::||| !:! !|||||| ! !:!!|||||||||||| ! ArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaTrpProIleP 204234 : AGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGTGGCCGATTC : 204291 37 : erPheTyrLysSerArgIleGluLysIleValSerLysIleLeuIleValIleCysTr : 55 !! ! !!...|||! !.!! !!:!:!!||| !!::!||| ! !|||:!! !:: roValAsnSerSerProPheThrArgLeuValArgArgIleGluHisValValThrTy 204292 : CAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGTAGTCACCta : 204348 56 : pIleSerSerLeuPheThrLeuIleProGlyValLeuHisPhePheLeuGluLysGlu : 74 :... ...... !:!!:!!||||||:!!|||:!! ! ||||||:!!:!!:!! rPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheLeuLysGluLys 204349 : tttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAG : 204405 75 : AspIleTyrValLysLeuLysIleLeuGlyProLeuThrHisTrpLeuValGlyGlyP : 94 :!! ! ! :!!:::||||||||||||||||||:!!..!:!!!! !:!! ! !| AsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSerIleGlnPheP 204406 : AACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCATACAGTTCT : 204465 95 : heAsnTyrAlaValLeuLeuLeuArgLysAspAspIleTyrTyrCysIleLysGlnIl : 113 ||!!.|||:!!|||:!!|||! !|||! ||| ! ||| ! ! !!:!:!!. || heLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSerLeuAsnThrIl 204466 : TCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGTTTGAACACCAT : 204522 114 : eCysAlaAspTrpAsnIleIleThrLysLysGlnAspGlnGlnValMetLeuLysAsn : 132 | ! !|||||| ||| .!!! ! ! :!!:!!!:! !:!!.!.! !..!!!. eArgArgAspTrp---IleGluAlaThrAspGluAsnArgLeuIlePheArgSerLys 204523 : CAGACGCGACTGG---ATAGAGGCTACGGATGAAAATCGGTTGATTTTCCGCTCGAAA : 204576 133 : AlaLysIleGlyArgTyrValAlaValPheCysThrValPheLeuGlnGlyGlyValP : 152 ||||||||||||||| ||| !:!!.!!....!!!.! !:!! ! ||||||! !! AlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetTyrGlyGlyGlyL 204577 : GCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGTACGGCGGTGGTT : 204636 153 : heCysThrCysLeuAlaLeuGlyAlaPheLysLysThrIleLysValAspAsnGluTh : 171 !.||| ! ! ! !||| ! !!!.!:! !|||||| ||| !!!:!. euCysTyrArgThrIleLeuProLeuLeuArgGlyThrIle---ValThrProAspAs 204637 : TGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATC---GTAACACCTGATAA : 204690 172 : rValAsnIleTyrAsnLeuProCysProAlaTyrAsnMet<-><->ProValAspThr : 188 !|||!.!||| ||||||||||||!.!||| ::: ! !.!. ! nValThrIleArgProLeuProCysProValTyrPheValPhePheAsnGluGlnArg 204691 : CGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaacGAGCAACGT : 204747 189 : AsnProThrHisAspIleIleLeuGlyThrGlnLeuLeuSerAlaPheIleCysSerS : 208 :::|||!.!:!!!!:|||:!!!!! ! !|||:!!:!!:!!!.!|||:!! !! !: SerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheValThrTyrA 204748 : TCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTGTTACTTACG : 204807 209 : erSerThrAlaGlyAlaPheSerPheValAlaIleCysAlaSerHisAlaLeuGlyGl : 227 !! !! !::!|||.!!! !.!!.!. !|||:!:! !!.! !||||||! !.!!.. laValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAlaCysSerMe 204808 : CTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGCGTGCAGCAT : 204864 228 : nLeuAsnLeuMetValIleTrpIleAsnGluTyrValAsnArgProLysLysLeuAsn : 246 !|||!..:!!:!!|||! ! !!!:|||! ! !|||:!!!:! ! ! :!!!.! tLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLys---AlaAspMetThr 204865 : GCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAG---GCGGACATGACC : 204918 247 : AsnAsnAlaTyrIleAsnLysIleGlyIleIleValGluHisHisLeuArgIle : 264 .!.!.. ! !!..||||||!.! !|||||||||:!!!!. !!:!||| GluThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrLysIle 204919 : GAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGAAGATA : 204974 vulgar: AmOr49 16 264 . KQ414889.1 204233 204974 + 247 M 101 303 G 1 0 M 47 141 G 1 0 M 18 54 G 0 6 M 57 171 G 1 0 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204234 204974 247 + . gene_id 19 ; sequence AmOr49 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204234 204974 . + . KQ414889.1 exonerate:protein2genome:local exon 204234 204974 . + . insertions 6 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 204234 204974 247 + . alignment_id 19 ; Query AmOr49 ; Align 204234 17 303 ; Align 204537 119 141 ; Align 204678 167 54 ; Align 204738 185 171 ; Align 204909 243 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 236 Query range: 299 -> 401 Target range: 283096 -> 283558 300 : GluTrpSerGluHisAsnIleGlnAsnLeuThrValTyrValMetIleIleIleSerM : 319 |||||||||!!: !:!!:!!|||!.!:!!|||..!:!! !!||||||:!!||||||| GluTrpSerAspGlyAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 283097 : GAATGGTCTGACGGCGATGTTCAGACTATGACTACGCATTTCATGATCCTTATATCCA : 283154 320 : etThrTyrAsnIlePheLeuValCysTyrIleGlyGluIleIleThrGluGluCys{L : 338 || :::||||||||| !|||! !|||||||||:!!|||:!!||||||:!! {! etCysPheAsnIlePheThrValTyrTyrIleGlyLysIleLeuThrGluGlnVal{T 283155 : TgtgtttcaacatttttacAGTATACTATATCGGGAAAATACTAACTGAACAGGTA{A : 283211 339 : y} >>>> Target Intron 1 >>>> {s}LysIleGlyAspIleValTyrMet : 346 } 72 bp {!}|||:!!|||!!::!:||||||||| h}-+ +-{r}LysValGlyGluValValTyrMet 283212 : C}tt.........................aa{A}AAAGTTGGTGAGGTGGTTTATATG : 283307 347 : ThrAsnTrpTyrGluLeuSerAspLysAsnIleLeuAsnLeuMetMetIleIleThrA : 366 ||||||! !!:! ! ||| !!||||||:!!||||||||||||:!::!:||||||:!!| ThrAsn***PheTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerA 283308 : ACGAATTAGTTTTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAA : 283367 367 : rgSerSerMetAsnIleAsnMetThrAlaGlyLysMetThrAsnMetSerValLeuTh : 385 ||||||||::: |||...:::||||||...|||::: ...||||||!.!! !|| rgSerSerLeuValIleLysIleThrAlaSerLysLeuIleGlnMetSerAlaTyrTh 283368 : GATCTAGCctggtaattaaaattaccgctagcaaattaattcaaatGTCCGCGTACAC : 283424 386 : rPheGlyLys >>>> Target Intron 2 >>>> IleValLysSerIlePheA : 395 ||||! ! ! 84 bp !:!!:!!!!!! !|||| rPheAspAsp++ ++AlaIleGluThrThrPheA 283425 : GTTCGACGATgt.........................agGCAATAGAAACCACTTTCg : 283538 396 : laTyrLeuAsnValLeuArg : 401 |||||||||||:::|||||| laTyrLeuAsnIleLeuArg 283539 : cgtatttaaatattctacgC : 283558 vulgar: AmOr49 299 401 . KQ414889.1 283096 283558 + 236 M 38 114 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 50 150 5 0 2 I 0 80 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283097 283558 236 + . gene_id 20 ; sequence AmOr49 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 283097 283212 . + . KQ414889.1 exonerate:protein2genome:local exon 283097 283212 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 283213 283214 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 283213 283284 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 283283 283284 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 283285 283435 . + . KQ414889.1 exonerate:protein2genome:local exon 283285 283435 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 283436 283437 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 283436 283519 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 283518 283519 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 283520 283558 . + . KQ414889.1 exonerate:protein2genome:local exon 283520 283558 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283097 283558 236 + . alignment_id 20 ; Query AmOr49 ; Align 283097 300 114 ; Align 283286 339 150 ; Align 283520 389 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 217 Query range: 294 -> 389 Target range: 214614 -> 215022 295 : TyrTyrIleLeuMetGluTrpSerGluHisAsnIleGlnAsnLeuThrValTyrValM : 314 ::: |||||| ||||||!:!..!:!!|||:!! !!.! !..!..!||||||: PheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValV 214615 : tttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGG : 214672 315 : etIleIleIleSerMetThrTyrAsnIlePheLeuValCysTyrIleGlyGluIleIl : 333 !!:!: !||||||:::|||:::|||||||||::: |||||||||||||||:!!:! alLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuVa 214673 : TGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGGCGAGCTTGT : 214729 334 : eThrGluGlu >>>> Target Intron 1 >>>> CysLysLysIleGlyAspI : 343 ::!!|||:!! 123 bp |||||||||:!!|||!!:: lSerGluGln++ ++CysLysLysValGlyGluV 214730 : GTCTGAACAGgt.........................agTGCAAAAAGGTCGGAGAAG : 214882 344 : leValTyrMetThrAsnTrpTyrGluLeuSerAspLysAsnIleLeuAsnLeuMetMe : 362 !! !||||||! !.!.||||||..!||| !!! !!!.!!.! ||| !! !!!::! alSerTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCysCysIleLe 214883 : TATCGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTGTTGCATTTT : 214939 363 : tIleIleThrArgSerSerMetAsnIleAsnMetThrAlaGlyLysMetThrAsnMet : 381 !|||!!:.!!! !|||!:! ::!:!!!!..!.|||||||||!!.|||..!.!.:!! uIleMetAlaMetSerAsnSerSerValLysPheThrAlaGlyAsnMetValGluLeu 214940 : GATCATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATGGTAGAACTG : 214996 382 : SerValLeuThrPheGlyLysIle : 389 |||:!! !||||||.!!!..:!! SerIleSerThrPheSerSerVal 214997 : TCTATCAGCACTTTCAGCAGTGTA : 215022 vulgar: AmOr49 294 389 . KQ414889.1 214614 215022 + 217 M 42 126 5 0 2 I 0 119 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214615 215022 217 + . gene_id 21 ; sequence AmOr49 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214615 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214615 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214615 215022 217 + . alignment_id 21 ; Query AmOr49 ; Align 214615 295 126 ; Align 214864 337 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 209 Query range: 18 -> 187 Target range: 294690 -> 295197 19 : SerIleGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProAlaSerPhe< : 38 |||:!!:!!!:! !||| !!:!:||||||||||||||| !|||||| !! !!:! SerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrS 294691 : AGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACA : 294748 39 : ->TyrLysSerArgIleGluLysIleValSerLysIleLeuIleValIleCysTrpIl : 56 :!!! |||!:!:!:.!.|||:!!:!!|||! !|||||||||!.! ||| !:! erHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLe 294749 : GTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTT : 294805 57 : eSerSerLeuPheThrLeuIleProGlyValLeuHisPhePheLeuGluLysGluAsp : 75 :!!! !||||||..!|||:!:||| !!! !! ! !! ! ! !!!.!. :::::: uThrValLeuPheValLeuValProCysGlyTyrPheCysValPheHisValLysAsn 294806 : GACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaac : 294862 76 : IleTyrValLysLeuLysIleLeuGlyProLeuThrHisTrpLeuValGlyGlyPheA : 95 ::: :::|||:!!|||:!!|||||||||:!! !:!!! :!!:!!..! !.!!! ValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuA 294863 : gtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCA : 294922 96 : snTyrAlaValLeuLeuLeuArgLysAspAspIleTyrTyrCysIleLysGlnIleCy : 114 ..|||::! !|||:!!|||!:!! ! !! .!! ! :!!||||||:!!.!.||| rgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCysIleGluAspIleGl 294923 : GGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGA : 294979 115 : sAlaAspTrpAsnIleIleThrLysLysGlnAspGlnGlnValMetLeuLysAsnAla : 133 !||||||!!.:!:||| !!!. !:!! !!!:! !:!!|||:!!||||||||| uAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIleMetIleLysAsnAla 294980 : GAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCG : 295036 134 : LysIleGlyArgTyrValAlaValPheCysThrValPheLeuGlnGlyGlyValPheC : 153 ! !:!! !!:! :!!.!!||| !! !|||:!!.!.:!! ! .!!..!!.! ! ! MetValThrGlnArgMetThrValAlaPheThrIleIleIleTyrSerSerAlaValS 295037 : ATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGT : 295096 154 : ysThrCysLeuAlaLeuGlyAlaPheLysLysThrIleLysValAspAsnGluThrVa : 172 ! ! ! !::: |||.........:!::!! :!!!!.:!!!.! erTyrHisAlaIleValProPhePheSerAsnAlaLeuGlu---AsnLysLysAsnAs 295097 : CGTATCACGCCATTGtgccatttttttcaaacgctTTGGAG---AACAAGAAGAATAA : 295150 173 : lAsnIleTyrAsnLeuProCysProAlaTyrAsnMetProValAsp : 187 !!..||| ! |||||| !|||!.!|||.!.:!: !|||||| nThrIleArgAlaLeuProIleProGlyTyrGluLeuPheValAsp 295151 : TACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGAC : 295197 vulgar: AmOr49 18 187 . KQ414889.1 294690 295197 + 209 M 19 57 G 0 3 M 129 387 G 1 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294691 295197 209 + . gene_id 22 ; sequence AmOr49 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294691 295197 . + . KQ414889.1 exonerate:protein2genome:local exon 294691 295197 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294691 295197 209 + . alignment_id 22 ; Query AmOr49 ; Align 294691 19 57 ; Align 294751 38 387 ; Align 295138 168 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 196 Query range: 334 -> 394 Target range: 277548 -> 277728 335 : GluGluCysLysLysIleGlyAspIleValTyrMetThrAsnTrpTyrGluLeuSerA : 354 ..!:!!|||||||||:!!|||!!::!:||||||||||||||||||||| ! ||| !!| ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 355 : spLysAsnIleLeuAsnLeuMetMetIleIleThrArgSerSerMetAsnIleAsnMe : 373 |||||:!!||||||||||||:!::!:||||||:!!|||||||||::: |||...:: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 374 : tThrAlaGlyLysMetThrAsnMetSerValLeuThrPheGlyLysIleValLysSer : 392 :||||||||||||::: ...|||||||||! !||||||||| ! :!! !..! ! eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspValArgSerLeu 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTACGTTCACTT : 277720 393 : IlePhe : 394 :!!||| LeuPhe 277721 : CTTTTT : 277728 vulgar: AmOr49 334 394 . KQ414889.1 277548 277728 + 196 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277728 196 + . gene_id 23 ; sequence AmOr49 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277549 277728 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277728 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277728 196 + . alignment_id 23 ; Query AmOr49 ; Align 277549 335 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 192 Query range: 335 -> 402 Target range: 264723 -> 265004 336 : GluCysLysLysIleGlyAspIleValTyrMetThrAsnTrpTyrGluLeuSerAspL : 355 :!!|||||||||:!!|||!!::!:|||||||||:!!||||||||| ! ||| !! !!| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 356 : ysAsnIleLeuAsnLeuMetMetIleIleThrArgSerSerMetAsnIleAsnMetTh : 374 ||:!!||||||:!!|||!!::!:|||||| !|||||||||:!! .!!!!..!.|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 375 : rAlaGlyLysMetThrAsnMetSerValLeuThrPheGlyLys >>>> Target I : 389 ||||||||||!!: !:!!||||||:!!! !||||||.!! ! 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 390 : ntron 1 >>>> IleValLysSerIlePheAlaTyrLeuAsnValLeuArgGln : 402 bp :!!:!!|||||| !|||.!!|||||||||:!!||||||||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArgGln 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGCCAA : 265004 vulgar: AmOr49 335 402 . KQ414889.1 264723 265004 + 192 M 53 159 5 0 2 I 0 76 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265004 192 + . gene_id 24 ; sequence AmOr49 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265004 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265004 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265004 192 + . alignment_id 24 ; Query AmOr49 ; Align 264724 336 159 ; Align 264963 389 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 17 -> 265 Target range: 303196 -> 304866 18 : TyrSerIleGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProAlaSerP : 37 ||| !! !:!! !!:!!:!|||||||||||| !!:!!||| !||||||||| !! TyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTrpProAlaValL 303197 : TACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTGGCCAGCCGTGT : 303254 38 : heTyrLysSerArgIleGluLysIleValSerLysIleLeuIleValIleCysTrpIl : 56 !. ..!..!! !! ! !.!!:!! !!|||||| !|||! !:!! !! :! eu------AspGluThrAlaGlyPheLeuProLysIleThrIleGlyLeuSerAsnLe 303255 : TG------GACGAAACCGCAGGATTCCTACCAAAAATCACCATTGGACTCAGTAATTT : 303305 57 : eSerSerLeuPheThrLeuIleProGlyValLeuHisPhePheLeuGluLysGluAsp : 75 : ! !|||||||||:!!|||||| !!:!!||||||.!..!.!!!|||:!!:!!||| uValLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnLysAsp 303306 : GGTTCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAAAGGAT : 303362 76 : IleTyr >>>> Target Intron 1 >>>> ValLysLeuLysIleLeuGlyPr : 85 ! 938 bp :!! !! !|||:!!! !!.! ThrIle-+ +-IleLeuArgLysLeuTyrAlaTy 303363 : ACGATAat.........................aaATTTTACGTAAACTTTACGCTTA : 304330 86 : oLeuThrHisTrpLeuValGlyGlyPheAsnTyrAlaValLeuLeuLeuArgLysAsp : 104 !:!!!:! ! ! ! ! ! ! .!.|||:!!:!!||| ::: rIleSerSerLeuTyrProPheHisArgGlnTyrSerIleLeuProCysLysLeuLys 304331 : TATTAGCTCATTATATCCCTTCCACCGACAATATTCTATACTTccttgcaaattaaaa : 304387 105 : AspIleTyrTyrCysIleLysGlnIleCysAlaAspTrpAsnIleIleThrLysLysG : 124 ::: !:! ! ! !.!.:!!! !.!!! !::.!. :!: !... : ArgLeuValPheArg***GlyAspLeuSerThrGlyTyrGluGlnValGluSerLeuA 304388 : cgtttaGTGTTTCGATAAGGGGATCTCTCTACTGGATATGAACAGGTGGAATCTCTCA : 304447 125 : lnAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaValPheCy : 143 :!|||!:::!!:!!||||||||| !!!.!:!!!!:|||||| !!:!!.!!:!!.!!|| rgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIleCy 304448 : GAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAATCTG : 304504 144 : sThrValPheLeu<->GlnGlyGlyValPheCysThrCysLeuAlaLeuGlyAlaPhe : 161 |.!!:!!|||:!! ||||||..!.!!! ! ! :!! !! ! !||| ! sAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheAlaThr 304505 : CGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCGACC : 304561 162 : LysLysThrIleLysValAspAsnGluThrValAsnIleTyrAsnLeuProCysProA : 181 !! ! !:!: ! ! ! !!|||...|||:!!!!. ! !! !||| ! !: GlyThrTyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProThrTyrS 304562 : GGAACGTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACCTACA : 304621 182 : laTyrAsnMetProValAspThrAsnProThrHisAspIleIleLeuGlyThrGlnLe : 200 :! ! .!. !|||.!.|||!:!|||! !:!!!!::!::!!! ! !..!!!.! erAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheValHisCy 304622 : GTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCATTG : 304678 201 : uLeuSerAlaPheIleCysSerSerSerThrAlaGlyAlaPheSerPheValAlaIle : 219 !:!!!!!!.!!:!:!! !! !|||! !||||||||||||! !.!!!!.!.!|||:!! sMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeu 304679 : CATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCTT : 304735 220 : CysAlaSerHisAlaLeuGlyGlnLeuAsnLeuMetValIleTrpIleAsnGluTyrV : 239 ! !|||!!!||||||! !||||||:!!:!!:!!:!::!! ! ! :!:..!!!: !| PheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAspLeuV 304736 : TTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGATCTTG : 304795 240 : alAsnArgProLysLysLeuAsnAsnAsnAlaTyrIleAsnLysIleGlyIleIleVa : 258 |||||!!! !:!!..!! !:!! :!! !!.::!:!! ! !||||| alAsnSerLysGluSerSerAspLeuAsp---------LysArgLeuIleGluIleVa 304796 : TCAACAGCAAAGAATCATCTGATTTAGAT---------AAACGATTAATAGAAATTGT : 304843 259 : lGluHisHisLeuArgIleLeu : 265 |||||||||||||||||||||| lGluHisHisLeuArgIleLeu 304844 : TGAGCATCATTTGCGAATTTTA : 304866 vulgar: AmOr49 17 265 . KQ414889.1 303196 304866 + 171 M 20 60 G 2 0 M 38 114 5 0 2 I 0 934 3 0 2 M 70 210 G 0 3 M 101 303 G 3 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303197 304866 171 + . gene_id 25 ; sequence AmOr49 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303197 303370 . + . KQ414889.1 exonerate:protein2genome:local exon 303197 303370 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 303371 303372 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 303371 304308 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304307 304308 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 304309 304866 . + . KQ414889.1 exonerate:protein2genome:local exon 304309 304866 . + . insertions 3 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 303197 304866 171 + . alignment_id 25 ; Query AmOr49 ; Align 303197 18 60 ; Align 303257 40 114 ; Align 304309 78 210 ; Align 304522 148 303 ; Align 304825 252 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 168 Query range: 333 -> 389 Target range: 234979 -> 235147 334 : ThrGluGluCysLysLysIleGlyAspIleValTyrMetThrAsnTrpTyrGluLeuS : 353 |||:!!:!!|||! |||:!!|||!!:! !||||||||||||.!.||||||..!||| ThrGlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuP 234980 : ACTCAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTAC : 235037 354 : erAspLysAsnIleLeuAsnLeuMetMetIleIleThrArgSerSerMetAsnIleAs : 372 !! !!|||!.! !|||..!|||:!:|||||||||:!!|||||||||||| |||!! roHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLy 235038 : CTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAA : 235094 373 : nMetThrAlaGlyLysMetThrAsnMetSerValLeuThrPheGlyLysIle : 389 .!!:||||||||||||.!. !.!.||||||||| !||||||||| ! :!: sIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235095 : AATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: AmOr49 333 389 . KQ414889.1 234979 235147 + 168 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234980 235147 168 + . gene_id 26 ; sequence AmOr49 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234980 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234980 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234980 235147 168 + . alignment_id 26 ; Query AmOr49 ; Align 234980 334 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 15 -> 226 Target range: 194165 -> 194795 16 : SerGluTyrSerIleGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProA : 35 !!!||||||:!!:!!!:! ! !:! !:!!|||! !||||||||| !|||||| ThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProA 194166 : ACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAA : 194223 36 : laSerPheTyrLysSerArgIleGluLysIleValSerLysIleLeuIleValIleCy : 54 !..! !! ! !! !! !! ::!:!: !!:!!:!!! ! !:!:|||.!!.. rgGluAspSerLeuArgAspArgValArgLeuPheAlaGlnThrGlyValValPheAl 194224 : GGGAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTTCGC : 194280 55 : sTrpIleSerSerLeuPheThrLeuIleProGlyValLeuHisPhePheLeuGluLys : 73 !! !!!: ! !||| !|||:!!||| !|||:!!:!! !!:!!!!!!: aLeuMet------CysPheLeuLeuValProHisValIleTyrThrTyrPheAspCys 194281 : TTTGATG------TGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGC : 194331 74 : GluAspIleTyrValLysLeuLysIleLeuGlyProLeuThrHisTrpLeuValGlyG : 93 ||||||:!: ! ! :!!|||:!!:!!!.! !!! !..! ! ! |||:!!!.! GluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaI 194332 : GAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGA : 194391 94 : lyPheAsnTyrAlaValLeuLeuLeuArgLysAspAspIleTyrTyrCysIleLysGl : 112 !.!!!!.!:! !..!:!!:!!:!!!.!!:! ! !!:||| !:!|||:!: !:! leIleLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGl 194392 : TCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGA : 194448 113 : nIleCysAlaAspTrpAsnIleIleThrLysLysGlnAspGlnGlnValMetLeuLys : 131 !!!: .!!.!.!::!.. !:!: ! :!!:!!|||!:!||||||||| !!!. uMetGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsn 194449 : GATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAAT : 194505 132 : AsnAlaLysIleGlyArgTyrValAlaValPheCysThrValPheLeuGlnGlyGlyV : 151 !|||||||||||||||!:! !!.!!..!.!.! ! !! !.!!! ! ! ||||||! CysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyA 194506 : TGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCG : 194565 152 : alPheCysThrCysLeuAlaLeuGlyAlaPhe<->LysLysThrIleLysValAspAs : 169 .!!!. ! !:!! !||| ! !.!. :!!!:!! !:!!|||! !||||| laLeuProTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGluAspAs 194566 : CTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAA : 194622 170 : nGluThrValAsnIleTyrAsnLeuProCysProAlaTyrAsnMetProValAspThr : 188 |...||| !! ! ! ! ! !! ! ! ! !.!. !!:!!!!: ! nSerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAsp 194623 : CAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGAC : 194679 189 : AsnProThrHisAspIleIleLeuGlyThrGlnLeuLeuSerAlaPheIleCysSerS : 208 :::|||! !:!!!!:|||! !!!!! !:!!|||:!!|||! !::! !||| ! !| SerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuS 194680 : TCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGT : 194739 209 : erSerThrAlaGlyAlaPheSerPheValAlaIleCysAlaSerHisAlaLeuGly : 226 ||!!!!.!..!||| !!:!|||!!.||||||! ! ! !! !|||..!! !||| erThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGly 194740 : CGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGC : 194795 vulgar: AmOr49 15 226 . KQ414889.1 194165 194795 + 156 M 41 123 G 2 0 M 103 309 G 0 3 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194166 194795 156 + . gene_id 27 ; sequence AmOr49 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194166 194795 . + . KQ414889.1 exonerate:protein2genome:local exon 194166 194795 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 194166 194795 156 + . alignment_id 27 ; Query AmOr49 ; Align 194166 16 123 ; Align 194289 59 309 ; Align 194601 162 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 16 -> 116 Target range: 299686 -> 299989 17 : GluTyrSerIleGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProAlaS : 36 .!.|||!!!:!:|||.!. !!:!|||:!:|||||||||||||||!.!|||! ! ! HisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpArgLeuL 299687 : CATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGCGATTGC : 299744 37 : erPheTyrLys<->SerArgIleGluLysIleValSerLysIleLeuIleValIleCy : 54 ! ! ! ::: |||!:!:!:||| ! :!!||||||! :!!|||!!:..!||||| euAspGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMetThrIleCy 299745 : TAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATGACAATATG : 299801 55 : sTrpIleSerSerLeuPheThrLeuIleProGlyValLeuHisPhePheLeuGluLys : 73 |!:: !||| !!!!|||! !:!!:!:|||..!! !! !:!!.!!|||!!!! !:!! sPheSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePhePheAlaGlu 299802 : CTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCTTCGCGGAG : 299858 74 : GluAspIleTyrValLysLeuLysIleLeuGlyProLeuThrHisTrpLeuValGlyG : 93 :!!..!|||:!!||||||:!!|||:!!!!!||||||:!! ! !!! ||| !..! LysSerIleHisValLysValLysValPheGlyProValGlyPheCysLeuSerSerI 299859 : AAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCA : 299918 94 : lyPheAsnTyrAlaValLeuLeuLeuArgLysAspAspIleTyrTyrCysIleLysGl : 112 ! !!!!.|||..! !|||! !|||!.! ! !! .!! ! ||||||:!!!! leValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCysIleGlnHi 299919 : TCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGCATCCAACA : 299975 113 : nIleCysAlaAsp : 116 .:!! !||| sValGluArgAsp 299976 : CGTCGAGAGAGAC : 299989 vulgar: AmOr49 16 116 . KQ414889.1 299686 299989 + 149 M 23 69 G 0 3 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299687 299989 149 + . gene_id 28 ; sequence AmOr49 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299687 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299687 299989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299687 299989 149 + . alignment_id 28 ; Query AmOr49 ; Align 299687 17 69 ; Align 299759 40 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 299 -> 336 Target range: 277371 -> 277482 300 : GluTrpSerGluHisAsnIleGlnAsnLeuThrValTyrValMetIleIleIleSerM : 319 |||||||||!!: !:!!:!!|||!..:!!|||..!:!! !!||||||:!!||||||| GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 320 : etThrTyrAsnIlePheLeuValCysTyrIleGlyGluIleIleThrGluGlu : 336 || :::||||||||| !|||||||||||||||||||||:!!||||||:!! etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAG : 277482 vulgar: AmOr49 299 336 . KQ414889.1 277371 277482 + 132 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277482 132 + . gene_id 29 ; sequence AmOr49 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277482 132 + . alignment_id 29 ; Query AmOr49 ; Align 277372 300 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 277 -> 345 Target range: 280025 -> 280229 278 : IleCysPheMetGluMetIleLysCysMetValGlyIleCysMetProIleTyrTyrI : 297 :!!|||!:!.!..!.!!::!!! !...! :!!!.!.!! !||| ! ! ! : LeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerLeuSerV 280026 : TTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGTTGTCAG : 280083 298 : leLeuMetGluTrpSerGluHisAsnIleGlnAsnLeuThrValTyrValMetIleIl : 316 !!!!! !||||||..!:!!:!!:!! ! !... ! !..!|||:!!|||.!!:! alPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLe 280084 : TTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCT : 280140 317 : eIleSerMetThrTyrAsnIlePheLeuValCysTyrIleGlyGluIleIleThrGlu : 335 !||||||:!:|||!:!|||:!!|||:!!:!!||||||||||||||||||:!!:!!||| uIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGlu 280141 : CATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAA : 280197 336 : GluCysLysLysIleGlyAspIleValTyr : 345 ::: |||...... :!!||| GlnValPhePheIleSerSerThrIleTyr 280198 : CaggtatttttcatttcttcaacGATCTAT : 280229 vulgar: AmOr49 277 345 . KQ414889.1 280025 280229 + 129 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280026 280229 129 + . gene_id 30 ; sequence AmOr49 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280026 280229 . + . KQ414889.1 exonerate:protein2genome:local exon 280026 280229 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280026 280229 129 + . alignment_id 30 ; Query AmOr49 ; Align 280026 278 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 293 -> 336 Target range: 305082 -> 305211 294 : IleTyrTyrIleLeuMetGluTrpSerGluHisAsnIleGlnAsnLeuThrValTyrV : 313 ::: |||::: ..!!!:|||..!... !|||! ! !:!||||||..!|||. ValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrThrTyrT 305083 : gttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATA : 305140 314 : alMetIleIleIleSerMetThrTyrAsnIlePheLeuValCysTyrIleGlyGluIl : 332 .!:!!:!!:!:||||||:!:|||!:!|||||||||:!!:!!||||||||||||||||| hrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIl 305141 : CAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGAT : 305197 333 : eIleThrGluGlu : 336 |:!!! !|||:!! eLeuMetGluLys 305198 : TCTTATGGAAAAG : 305211 vulgar: AmOr49 293 336 . KQ414889.1 305082 305211 + 122 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305083 305211 122 + . gene_id 31 ; sequence AmOr49 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305083 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305083 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305083 305211 122 + . alignment_id 31 ; Query AmOr49 ; Align 305083 294 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 297 -> 347 Target range: 224317 -> 224467 298 : LeuMetGluTrpSerGluHisAsnIleGlnAsnLeuThrValTyrValMetIleIleI : 317 !!!...|||||||||... :!!:!! !:! !..!..!||| !!!!::!!:!!! PheGlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuM 224318 : TTTCaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCA : 224375 318 : leSerMetThrTyrAsnIlePheLeuValCysTyrIleGlyGluIleIleThrGluGl : 336 !:|||:::|||:::|||||||||::: |||||||||||||||:!::!!.!!|||:: etSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl 224376 : TGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAca : 224432 337 : uCysLysLysIleGlyAspIleValTyrMetThr : 347 : |||...... ::: ::: ||| nValLysAsnPheLeuLysLeuPhePheThrThr 224433 : ggtgaaaaattttttaaaattattcttcacCACT : 224467 vulgar: AmOr49 297 347 . KQ414889.1 224317 224467 + 114 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224318 224467 114 + . gene_id 32 ; sequence AmOr49 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224318 224467 . + . KQ414889.1 exonerate:protein2genome:local exon 224318 224467 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224318 224467 114 + . alignment_id 32 ; Query AmOr49 ; Align 224318 298 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 297 -> 336 Target range: 234797 -> 234914 298 : LeuMetGluTrpSerGluHisAsnIleGlnAsnLeuThrValTyrValMetIleIleI : 317 :!!:!: ! ..!||| ! ::: :::...|||.!! !||||||!!::!: !: IleLeuThrSerGlnGluLysSerLysGluLysLeuAlaSerTyrValIleValTyrV 234798 : ATTTTAACTTCTCAGGAAAAgtcgaaggaaaaattagCTTCATACGTCATCGTGTACG : 234855 318 : leSerMetThrTyrAsnIlePheLeuValCysTyrIleGlyGluIleIleThrGluGl : 336 !:|||||||||!::|||||||||::: |||||||||||||||! :!!||||||:! alSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGl 234856 : TGTCCATGACATTtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGCA : 234912 337 : u : 336 ! n 234913 : G : 234914 vulgar: AmOr49 297 336 . KQ414889.1 234797 234914 + 101 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234798 234914 101 + . gene_id 33 ; sequence AmOr49 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234798 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234798 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234798 234914 101 + . alignment_id 33 ; Query AmOr49 ; Align 234798 298 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 295 -> 336 Target range: 210651 -> 210774 296 : TyrIleLeuMetGluTrpSerGluHisAsnIleGlnAsnLeuThrValTyrValMetI : 315 !:!:!!||| !||||||..!... ! :!! ! !:! ! !..!|||:!!:!:: PheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValL 210652 : TTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTAC : 210709 316 : leIleIleSerMetThrTyrAsnIlePheLeuValCysTyrIleGlyGluIleIleTh : 334 !!:!!! !|||:!:|||!:!|||||||||:!! !!|||||||||||||||:!::!:.! euLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAl 210710 : TCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGC : 210766 335 : rGluGlu : 336 !|||:!: aGluGln 210767 : TGAACAg : 210774 vulgar: AmOr49 295 336 . KQ414889.1 210651 210774 + 100 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210652 210774 100 + . gene_id 34 ; sequence AmOr49 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 210652 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210652 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210652 210774 100 + . alignment_id 34 ; Query AmOr49 ; Align 210652 296 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 799 Query range: 12 -> 300 Target range: 274368 -> 275306 13 : AspAsnLeuSerGluTyrSerIleLysLeuSerArgTrpTyrLeuLysProLeuGlyA : 32 |||!:!||||||!!:||||||:!::!!|||!:!||||||!:!|||||||||:!!|||| AspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyA 274369 : GACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCG : 274426 33 : laTrpProAlaSerSerSerThrThrLysMetGluArgIleIleSerGlnIleLeuIl : 51 |||||||| !:!!||| !!|||||||||.!.|||||||||:!!|||!!.:::||||| laTrpProLeuAlaSerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIl 274427 : CGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaat : 274483 52 : eValIleCysTrpCysIleIleLeuPheThrValIleProGlyIleLeuTyrIleLeu : 70 | :::|||:::|||.!!||||||! !||||||||||||.!!|||!!!:!!|||:!! ePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIlePheHisIleIle 274484 : cttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATA : 274540 71 : PheValLysGlnAspIleTyrValLysLeuLysIlePheGlyProLeuSerHisTrpC : 90 .!.||| ! :!!..!:!!:!!:!!|||||||||:!:.!!|||||||||.!!||||||! LeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpP 274541 : CTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGT : 274600 91 : ysIleAspGlyPheAsnTyrAlaIleLeuLeuLeuArgLysAsnAspIleLeuHisCy : 109 !|||! |||.!!||||||.!!! ||||||||||||!..!!.!!:|||! ! !|| heIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCy 274601 : TCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTG : 274657 110 : sIleGluHisLeuArgAlaAspTrpLysLeuIleThrArgThrGlnAspGlnGlnVal : 128 |:!:||||||:!!!:!.!!||||||!:!:!!:!:|||||| !!:!!|||||||||||| sValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnVal 274658 : CGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTG : 274714 129 : MetLeuArgAsnAlaLysMetGlyArgTyrIleAlaAlaPheCysAlaIlePheMetG : 148 ||||||!:!|||||||||!!:|||||||||:!!||| !||||||||| ||||||| MetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetG 274715 : ATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGC : 274774 149 : lnValIleIlePhePheThrCysPheIleLeuGlyIlePheLysArgSerIleHisIl : 167 || ! !:!!.!!! ! !||| ! ||| !!.!.!! !! !!:!!!!:!!!!.:! lnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnVa 274775 : AATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGT : 274831 168 : eAspAsnLysThrValGluLeuTyrAsnLeuProCysProAlaTyrLys<-><->Ile : 184 !! |||:!!||| ! :!!:!!! ||||||||| !||||||||| :!! lGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLysLysIleVal 274832 : AGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTC : 274888 185 : ProPheAspThrAspProThrIleHisAspIleMetLeuGlyThrGlnPheLeuSerA : 204 !! ! ||||||..!|||||| :!!!!:|||:!:|||!.!:!!||||||:!!|||! AlaValAspThrSerProThr---AsnGluIleValLeuAlaSerGlnPheValSerG 274889 : GCGGTGGACACGAGTCCGACG---AACGAGATCGTCCTTGCCTCGCAATTCGTGTCGG : 274945 205 : laPheValValSerSerSerAlaSerAlaSerPheThrLeuAlaThrIlePheThrCy : 223 .!|||:!!|||!:!||||||||| !!.!:!!|||!:!||||||.!!:!:|||.!!.. lyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAl 274946 : GATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGC : 275002 224 : sHisValLeuGlyGlnLeuAsnIleMetMetIleTrpIleAsnGluPheValAspArg : 242 .|||!.!! !|||||||||!:!:!::!!||||||||||||!.!|||||||||:!!!.! aHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheValAsnHis 275003 : ACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCAT : 275059 243 : LeuGlnArgLysGluAsnLysAspAsnHisIleAsnLysIleGlyValIleValGluH : 262 ...||| ! :::||||||::: :::...::!:!!|||||||||:!!||||||| ---SerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValValValGluH 275060 : ---TCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAAC : 275116 263 : isHisLeuArgIleLeu{Se} >>>> Target Intron 1 >>>> {r}LeuIl : 270 |||||||||||:!!|||{||} 74 bp {|}!!!|| isHisLeuArgValLeu{Se}++ ++{r}PheIl 275117 : ATCATCTGAGGGTACTC{AG}gt.........................ag{T}TTCAT : 275214 271 : eAlaArgIleGluArgIleThrCysProIleTyrPheMetGluLeuPheLysCysMet : 289 ||||||||||||| !:!:! ! !! !|||! !|||||||||||||||||||||! eAlaArgIleGluAspValMetAsnArgIleCysPheMetGluLeuPheLysCysThr 275215 : AGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAATTGTTCAAGTGTACT : 275271 290 : MetGlyMetCysMetProSerTyrTyrPheLeu : 300 :!!! !|||||||||! !.!!||||||.!!||| LeuAspMetCysMetLeuGlyTyrTyrIleLeu 275272 : CTGGATATGTGCATGCTTGGCTATTACATTCTC : 275306 vulgar: AmOr50 12 300 . KQ414889.1 274368 275306 + 799 M 171 513 G 0 6 M 8 24 G 1 0 M 50 150 G 1 0 M 24 72 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274369 275306 799 + . gene_id 1 ; sequence AmOr50 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274369 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274369 275135 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274369 275306 799 + . alignment_id 1 ; Query AmOr50 ; Align 274369 13 513 ; Align 274888 184 24 ; Align 274912 193 150 ; Align 275062 244 72 ; Align 275211 269 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 780 Query range: 0 -> 300 Target range: 266586 -> 267555 1 : MetThrAsnAspIleAsnValAlaLysGlnArgSerAspAsnLeuSerGluTyrSerI : 20 |||.!!|||!!: ||| !:!! !!.! !:!!!:!||||||!!:||||||: MetAlaAsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerL 266587 : ATGGCTAACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCC : 266644 21 : leLysLeuSerArgTrpTyrLeuLysProLeuGlyAlaTrpProAlaSerSerSerTh : 39 !::!!|||!:!||||||!:!|||||||||:!!|||||||||||| !!! !||| !|| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuTh 266645 : TGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCAC : 266701 40 : rThrLysMetGluArgIleIleSerGlnIleLeuIleValIleCysTrpCysIleIle : 58 |:!!|||:!:|||||||||:!!||| ! !|||||||||||||||!::||| !||| rSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIle 266702 : ATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATA : 266758 59 : LeuPheThrValIleProGlyIleLeuTyrIleLeuPheValLysGlnAspIleTyrV : 78 |||||||||||||||||| !!:!:!!!:!!:!!:!!.!.! ! ! :!!..!||| !. LeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgT 266759 : CTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTA : 266818 79 : alLysLeuLysIlePheGlyProLeuSerHisTrpCysIleAspGlyPheAsnTyrAl : 97 .!|||:!!|||:!:|||||||||||||||||||||! !:!!! |||.!!||||||.! hrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrTh 266819 : CGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACAC : 266875 98 : aIleLeuLeuLeuArgLysAsnAspIleLeuHisCysIleGluHisLeuArgAlaAsp : 116 !! !||||||||||||!..!!.!!:|||! ! !|||:!!||||||:!!!:!.!!||| rThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAsp 266876 : CACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGAT : 266932 117 : TrpLysLeuIleThrArgThrGlnAspGlnGlnValMetLeuArgAsnAlaLysMetG : 136 |||!:!:!!:!:|||||| !!:!!|||:!!||||||||||||!:!||||||!:!!!:| TrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleG 266933 : TGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCG : 266992 137 : lyArgTyrIleAlaAlaPheCysAlaIlePheMetGlnValIleIlePhePheThrCy : 155 |||||||||||||| !||||||||| ||||||||| ! !:!!.!! ! !|| lyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCy 266993 : GTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTG : 267049 156 : sPheIleLeuGlyIlePheLysArgSerIleHisIleAspAsnLysThrValGluLeu : 174 | ! ||| !!.!.!! !! !!:!!!!:!:.!.:!!! !|||:!!||| ! :!! sValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleVal 267050 : TGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTA : 267106 175 : TyrAsnLeuProCysProAlaTyrLys<-><->IleProPheAspThrAspProThrI : 192 :!! ||||||||| !!!.!|||||| ||| !! !!||||||..!|||||| HisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThr- 267107 : CATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACG- : 267166 193 : leHisAspIleMetLeuGlyThrGlnPheLeuSerAlaPheValValSerSerSerAl : 211 :!!!!:|||:!:|||! !:!!||||||:!!|||!.!|||:!!|||!:!||||||!. --AsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerVa 267167 : --AACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGT : 267220 212 : aSerAlaSerPheThrLeuAlaThrIlePheThrCysHisValLeuGlyGlnLeuAsn : 230 ! !!.!:!!|||!:!||||||.!!:!:|||.!!..!|||!.!! !|||||||||!:! lValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSer 267221 : CGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGC : 267277 231 : IleMetMetIleTrpIleAsnGluPheValAspArgLeuGlnArgLysGluAsnLysA : 250 :!::!!|||!!:||||||!!.|||||||||:!!||| ...||| ! ...||||||: ValLeuMetMetTrpIleLysGluPheValAsnArg---SerArgAspSerAsnLysA 267278 : GTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGA---TCCAGAGATAGCAATAAGA : 267334 251 : spAsnHisIleAsnLysIleGlyValIleValGluHisHisLeuArgIleLeu{Se} : 268 !! ! !.!!:!!||||||||||||:!!||||||||||||||||||:!!|||{||} snValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se}+ 267335 : ACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG}g : 267390 269 : >>>> Target Intron 1 >>>> {r}LeuIleAlaArgIleGluArgIleThr : 277 69 bp {|}!!!|||||||||||||||!!!:!!! ! + ++{r}PheIleAlaArgIleGluSerValMet 267391 : t.........................ag{C}TTCATAGCACGTATCGAAAGTGTAATG : 267484 278 : CysProIleTyrPheMetGluLeuPheLysCysMetMetGlyMetCysMetProSerT : 297 !! !|||! !|||||||||||||||||||||! |||! !!!:|||:!!! !|||| SerGluIleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSerT 267485 : AGCGAAATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCT : 267544 298 : yrTyrPheLeu : 300 |||||.!!||| yrTyrIleLeu 267545 : ATTATATCCTT : 267555 vulgar: AmOr50 0 300 . KQ414889.1 266586 267555 + 780 M 183 549 G 0 6 M 8 24 G 1 0 M 50 150 G 1 0 M 24 72 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266587 267555 780 + . gene_id 2 ; sequence AmOr50 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266587 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266587 267389 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267555 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266587 267555 780 + . alignment_id 2 ; Query AmOr50 ; Align 266587 1 549 ; Align 267142 184 24 ; Align 267166 193 150 ; Align 267316 244 72 ; Align 267460 269 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 711 Query range: 13 -> 300 Target range: 262837 -> 263770 14 : AsnLeuSerGluTyrSerIleLysLeuSerArgTrpTyrLeuLysProLeuGlyAlaT : 33 !:!||||||!!:||||||:!::!!:!!!:!|||||| |||||||||:!!||||||| SerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaT 262838 : AGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCAT : 262895 34 : rpProAlaSerSerSerThrThrLysMetGluArgIleIleSerGlnIleLeuIleVa : 52 ||||| !|||:!!|||! !:!!!:!|||||||||||||||!!! :!!|||||||| rpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleVa 262896 : GGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGT : 262952 53 : lIleCysTrpCysIleIleLeuPheThrValIleProGlyIleLeuTyrIleLeuPhe : 71 |:!!|||!::|||:!!||||||! !||||||||||||..!||||||:!!|||:!!.!. lValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeu 262953 : CGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTA : 263009 72 : ValLysGlnAspIleTyrValLysLeuLysIlePheGlyProLeuSerHisTrpCysI : 91 ! ! :!!:!!.!!:!!:!!||||||:!!:!!.!!|||||||||.!!!!.|||! !: GluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheV 263010 : GAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCG : 263069 92 : leAspGlyPheAsnTyrAlaIleLeuLeuLeuArgLysAsnAspIleLeuHisCysIl : 110 !!! ! !.!!||||||.!! |||||||||!.!!..!!.||||||! ! !|||:! alGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysVa 263070 : TCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGT : 263126 111 : eGluHisLeuArgAlaAspTrpLysLeuIleThrArgThrGlnAspGlnGlnValMet : 129 ::!!|||:!!!:!! !|||||| :!!:!:|||||| !:!!||||||!:::!!||| lGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMet 263127 : GCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATG : 263183 130 : LeuArgAsnAlaLysMetGlyArgTyrIleAlaAlaPheCysAlaIlePheMetGlnV : 149 |||!:!||||||||| |||||||||:!:||||||! !||||||||||||||||||. LeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnT 263184 : CTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAA : 263243 150 : alIleIlePhePheThrCysPheIleLeuGlyIlePheLysArgSerIleHisIleAs : 168 .!! !|||.!.! !! !|||.!.:!! !!.!.!! !! !!:! !|||.!. !! hrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGl 263244 : CGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGG : 263300 169 : pAsnLysThrValGluLeuTyrAsnLeuProCysProAlaTyrLys<-><->IlePro : 185 !|||:!!||| ! ||| !! ||||||||||||!.!|||||| |||||| yAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLysGluIleIlePro 263301 : TAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCA : 263357 186 : PheAspThrAspProThrIleHisAspIleMetLeuGlyThrGlnPheLeuSerAlaP : 205 !!||||||:!!|||||| :!!!!:|||.!.|||!.!|||||||||||||||!.!| ValAspThrAsnProThr---AsnGluIlePheLeuAlaThrGlnPheLeuSerGlyP 263358 : GTCGACACGAATCCGACG---AACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTT : 263414 206 : heValValSerSerSerAlaSerAlaSerPheThrLeuAlaThrIlePheThrCysHi : 224 ||:!!|||!!!:!!!!!.!! !!.!:!!||| !:!!.!!.!!:!:|||.!! !!|| heIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHi 263415 : TCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCA : 263471 225 : sValLeuGlyGlnLeuAsnIleMetMetIleTrpIleAsnGluPheValAspArgLeu : 243 |!.!! !||||||||||||:!::!!||| !||||||!..|||||||||:!!!:! sAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGln--- 263472 : TGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAG--- : 263528 244 : GlnArgLysGluAsnLysAspAsnHisIleAsnLysIleGlyValIleValGluHisH : 263 ...||| ! |||||||||:!! !:!!.!!!.!:!!|||||||||||||||||||||| SerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValGluHisH 263529 : TCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATC : 263585 264 : isLeuArgIleLeu{Se} >>>> Target Intron 1 >>>> {r}LeuIleAl : 271 ||||||||:!!|||{||} 72 bp {|}!!!|||! isLeuArgValLeu{Se}++ ++{r}PheIleAs 263586 : ATCTGAGAGTTCTG{AG}gt.........................ag{T}TTCATAGA : 263681 272 : aArgIleGluArgIleThrCysProIleTyrPheMetGluLeuPheLysCysMetMet : 290 !||||||:!!!.!:!:! ! !! !!|||! !|||:!!||||||||||||..!! !:!! pArgIleLysAsnValMetSerThrIleCysPheValGluLeuPheLysAlaThrLeu 263682 : TCGTATTAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCAAGGCTACGCTG : 263738 291 : GlyMetCysMetProSerTyrTyrPheLeu : 300 ! !!!:||||||! !.!!||||||.!.||| AspIleCysMetLeuGlyTyrTyrIleLeu 263739 : GATATATGCATGCTAGGTTACTACATACTT : 263770 vulgar: AmOr50 13 300 . KQ414889.1 262837 263770 + 711 M 170 510 G 0 6 M 8 24 G 1 0 M 50 150 G 1 0 M 24 72 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262838 263770 711 + . gene_id 3 ; sequence AmOr50 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262838 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262838 263601 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 263673 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263672 263673 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 263674 263770 . + . KQ414889.1 exonerate:protein2genome:local exon 263674 263770 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262838 263770 711 + . alignment_id 3 ; Query AmOr50 ; Align 262838 14 510 ; Align 263354 184 24 ; Align 263378 193 150 ; Align 263528 244 72 ; Align 263675 269 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 658 Query range: 16 -> 407 Target range: 232456 -> 235266 17 : GluTyrSerIleLysLeuSerArgTrpTyrLeuLysProLeuGlyAlaTrpProAlaS : 36 ||||||||||||:!!:!!!:!||||||!:!|||! !|||:!!|||||||||||| ! GluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgV 232457 : GAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTG : 232514 37 : erSerSerThrThrLysMetGluArgIleIleSerGlnIleLeuIleValIleCysTr : 55 !!!!..!|||:!!!:! :!!!:!:!!:!!:!!:!!:!:|||! !:!!! !||| alThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHi 232515 : TTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCA : 232571 56 : pCysIleIleLeuPheThrValIleProGlyIleLeuTyrIleLeuPheValLysGln : 74 ! !:!:!!::!!! !:!!:!!:!!||| !!||||||!:!|||||||||! ! ! ! sSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThr 232572 : TTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACG : 232628 75 : AspIleTyrValLysLeuLysIlePheGlyProLeuSerHisTrpCysIleAspGlyP : 94 ..!:!! ! ! !!:!:!!||| !.!!||||||:!!||||||!:: !!:! !! !! SerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluL 232629 : AGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAAT : 232688 95 : heAsnTyrAlaIleLeuLeuLeuArgLysAsnAspIleLeuHisCysIleGluHisLe : 113 !.||||||..! !|||||| !!:! !||||||||||||:!!|||:!:|||!!.:! euAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnVa 232689 : TGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGT : 232745 114 : uArgAlaAspTrpLysLeuIleThrArgThrGlnAspGlnGlnValMetLeuArgAsn : 132 !!:! !||||||::! !:!!! !!:! !! !!!::.!.:!!||||||!:!||| lLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsn 232746 : GAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAAC : 232802 133 : AlaLysMetGlyArgTyrIleAlaAlaPheCysAlaIlePheMetGlnValIleIleP : 152 ||||||:!:||||||! ||||||..!.!!..!|||.!!! !|||!!...! !:!! AlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValG 232803 : GCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCG : 232862 153 : hePheThrCysPheIleLeuGlyIlePheLysArgSerIleHisIleAspAsnLysTh : 171 !! ! ! .!.:!! !|||:!! !! !!!!!!!.!!:!!:!:! |||:!!!: lySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSe 232863 : GCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAG : 232919 172 : rValGluLeuTyrAsnLeuProCysProAlaTyrLysIleProPheAspThrAsp<-> : 190 ! !..!:!!||| ||||||||| !! !|||! !! ! !.!.|||||| rTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPhe 232920 : TTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTC : 232976 191 : ProThrIleHisAspIleMetLeuGlyThrGlnPheLeuSerAlaPheValValSerS : 209 ! !!! :!!!!:||||||!!!! ! !|||! !||||||!.!|||:!!|||!:!| SerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnS 232977 : AGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACT : 233036 210 : erSerAlaSerAlaSerPheThrLeuAlaThrIlePheThrCysHisValLeuGlyGl : 228 || !.!! !!.!:!!! ! !|||!.!.!!:!!.!..!! |||!.!! !||||| erValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGl 233037 : CCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACA : 233093 229 : nLeuAsnIleMetMetIleTrpIleAsnGluPheValAspArgLeuGlnArgLysGlu : 247 |||||||:!::!!||| :!::!!!!:!!.|||||| ! ! !!:!:!!||| nLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGlyGlnGluGlu 233094 : GCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAGGAGGAG : 233150 248 : AsnLysAspAsnHisIleAsnLysIleGlyValIleValGluHisHisLeuArgIleL : 267 !.. ! .!. !..|||:!!||| !!|||||||||||||||||||||! !| ArgValAlaGln------ArgLysLeuGlyPheIleValGluHisHisLeuArgThrL 233151 : AGAGTCGCGCAG------AGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACAT : 233204 268 : euSerLeuIleAla >>>> Target Intron 1 >>>> ArgIleGluArgIle : 276 ||!!!! !:!::!! 1493 bp !|||..!! !:!! euArgTyrLeuSer++ ++LeuIleSerMetLeu 233205 : TAAGGTATTTGTCTgt.........................agTTAATATCAATGTTA : 234724 277 : ThrCysProIleTyrPheMetGluLeuPheLysCysMetMetGlyMetCysMetProS : 296 ||| ! !:!!:!! !!:! ...||| ...... !:!: !! ThrAsnLysValHisGlyIleGlyThrLeuLysPheSerSerAsnPheArgValThrL 234725 : ACGAACAAAGTACATGGGATCGGtacactgaaattttcatcgaattttcgCGTAACTC : 234784 297 : erTyr--TyrPheLeuAlaGluTrpSerGluArgAsnIleGlnAsnLeuThrIleTyr : 314 !|||## ! ! !:!! ! ! ..!|||!::::: :::...|||.!! !||| euTyr##LysCysIleLeuThrSerGlnGluLysSerLysGluLysLeuAlaSerTyr 234785 : TTTATGCAAATGTATTTTAACTTCTCAGGAAAAgtcgaaggaaaaattagCTTCATAC : 234840 315 : ValMetValAlaLeuSerMetSerPheAsnIleLeuLeuValCysCysIleGlyGluI : 334 |||!!:||| !:!!||||||!!!|||||||||...::: ||| !|||||||||! ValIleValTyrValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluT 234841 : GTCATCGTGTACGTGTCCATGACATTtaatatattcatattttgttACATCGGAGAGA : 234900 335 : leLeuArgGluGln >>>> Target Intron 2 >>>> CysLysLysValGly : 343 |||! !|||||| 74 bp |||! ||||||||| hrLeuThrGluGln++ ++CysThrLysValGly 234901 : CGCTTACAGAGCAGgt.........................agTGTACCAAAGTCGGA : 235001 344 : AspMetValTyrMetThrAsnTrpTyrGlnLeuProAspLysAspIleLeuAsnLeuI : 363 !!:! ||||||||||||.!.||||||!:!|||||| !!||| ! !|||..!|||: GluLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuV 235002 : GAAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGG : 235061 364 : leMetIleIleSerArgSerSerValGluValLysIleThrAlaGlyLysIleIleTh : 382 !!|||||||||||||||||||||:!!! !:!!||||||||||||||||||.!!:!! alMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheLeuGl 235062 : TAATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACA : 235118 383 : rMetSerIleTyrThrPheGlyAsn >>>> Target Intron 3 >>>> IleV : 392 !||||||:!! |||||||||:!! 71 bp :!! nMetSerValAlaThrPheGlyAsp++ ++ValP 235119 : AATGTCTGTCGCAACATTTGGCGATgt.........................agGTAT : 235219 393 : alLysThrValPheAlaTyrLeuAsnMetLeuArgGlnIleThrMet : 407 !!|||.!! !|||||||||!!!||||||:!!||| !:!!.!!||| heLysAlaSerPheAlaTyrPheAsnMetIleArgThrValAlaMet 235220 : TTAAGGCGTCTTTCGCCTACTTCAACATGATCCGCACAGTTGCAATG : 235266 vulgar: AmOr50 16 407 . KQ414889.1 232456 235266 + 658 M 173 519 G 0 3 M 62 186 G 2 0 M 18 54 5 0 2 I 0 1489 3 0 2 M 26 78 F 0 2 M 41 123 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232457 235266 658 + . gene_id 4 ; sequence AmOr50 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232457 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232457 233218 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 233219 233220 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233219 234711 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234710 234711 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234712 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234712 234914 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235144 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235144 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 235145 235146 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 235145 235215 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 235214 235215 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 235216 235266 . + . KQ414889.1 exonerate:protein2genome:local exon 235216 235266 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232457 235266 658 + . alignment_id 4 ; Query AmOr50 ; Align 232457 17 519 ; Align 232979 190 186 ; Align 233165 254 54 ; Align 234712 272 78 ; Align 234792 298 123 ; Align 234989 339 156 ; Align 235216 391 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 640 Query range: 0 -> 268 Target range: 259721 -> 260525 1 : MetThrAsnAspIleAsnValAlaLysGlnArgSerAspAsnLeuSerGluTyrSerI : 20 ||||||||| ! !!!.!:!! !!!!! ! !!:!! !|||!!:||||||: MetThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerL 259722 : ATGACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCC : 259779 21 : leLysLeuSerArgTrpTyrLeuLysProLeuGlyAlaTrpProAlaSerSerSerTh : 39 !!:!!!!!!:!||||||!:!|||||||||:!!|||||||||||| !!||||||||||| euGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 259780 : TCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCAC : 259836 40 : rThrLysMetGluArgIleIleSerGlnIleLeuIleValIleCysTrpCysIleIle : 58 ||||!:!:!:|||!:!||||||||| ||||||||| !!||||||!:: !!! !||| rThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIle 259837 : GACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATA : 259893 59 : LeuPheThrValIleProGlyIleLeuTyrIleLeuPheValLysGlnAspIleTyrV : 78 ||| !!|||:!!|||||| !!:!!|||:!!!!:|||.!!! !|||:!!..!:!:|||: LeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrM 259894 : CTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACA : 259953 79 : alLysLeuLysIlePheGlyProLeuSerHisTrpCysIleAspGlyPheAsnTyrAl : 97 !!||| !|||:!:.!!|||||||||!!!||||||! !:!!! ! !!.!!||||||.! etLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrTh 259954 : TGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACAC : 260010 98 : aIleLeuLeuLeuArgLysAsnAspIleLeuHisCysIleGluHisLeuArgAlaAsp : 116 !! |||||||||||| !..||||||||| !|||:!:||||||:!!..! !||| rThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAsp 260011 : AACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGAT : 260067 117 : TrpLysLeuIleThrArgThrGlnAspGlnGlnValMetLeuArgAsnAlaLysMetG : 136 |||!:!:!!||||||||| !:!!||||||.!.|||||||||||| !!||||||.!.| TrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheG 260068 : TGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCG : 260127 137 : lyArgTyrIleAlaAlaPheCysAlaIlePheMetGlnValIleIlePhePheThrCy : 155 ||||||||:!!||||||! !|||||| !|||:!!|||! ! !:!!.!.! ! !|| lyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCy 260128 : GCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTG : 260184 156 : sPheIleLeuGlyIlePheLysArgSerIleHisIleAspAsnLysThrValGluLeu : 174 |!!.:!! !! !:!: !! !..! !|||!!.:!:! |||:!!||| ! :!! sLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal 260185 : TTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTT : 260241 175 : TyrAsnLeuProCysProAlaTyrLysIleProPheAsp<->ThrAspProThrIleH : 193 :!! ||||||||| !!!.!|||||| ! !.!.:!! !.!||| ! !!!!:: HisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetA 260242 : CATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGA : 260301 194 : isAspIleMetLeuGlyThrGlnPheLeuSerAlaPheValValSerSerSerAlaSe : 212 !!!!:|||:!:|||! !..!||||||:!!|||!.!|||:!!|||!:!||||||.!! snGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrVa 260302 : ACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGT : 260358 213 : rAlaSerPheThrLeuAlaThrIlePheThrCysHisValLeuGlyGlnLeuAsnIle : 231 !!.!! !|||!:!||||||.!!:!!.!.|||..!|||!.!! !||||||||||||:!: lGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnVal 260359 : TGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTG : 260415 232 : MetMetIleTrpIleAsnGluPheValAspArgLeuGlnArgLysGluAsnLysAspA : 251 :!:||| !||||||!..||||||||||||..! ..!|||!!...!!!.||| ! LeuMetGluTrpIleThrGluPheValAspGlu---SerArgAsnArgLysLysLysA 260416 : CTCATGGAATGGATCACGGAGTTTGTGGACGAG---TCGAGGAACAGGAAGAAAAAGG : 260472 252 : snHisIleAsnLysIleGlyValIleValGluHisHisLeuArgIleLeuSer : 268 !! !.!!!!.:!!|||||||||||||||||||||||||||||| !|||!!! laProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeuThr 260473 : CTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTCACG : 260525 vulgar: AmOr50 0 268 . KQ414889.1 259721 260525 + 640 M 187 561 G 0 3 M 55 165 G 1 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259722 260525 640 + . gene_id 5 ; sequence AmOr50 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259722 260525 . + . KQ414889.1 exonerate:protein2genome:local exon 259722 260525 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 259722 260525 640 + . alignment_id 5 ; Query AmOr50 ; Align 259722 1 561 ; Align 260286 188 165 ; Align 260451 244 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 596 Query range: 0 -> 267 Target range: 256601 -> 257402 1 : MetThrAsnAspIleAsnValAlaLysGlnArgSerAspAsnLeuSerGluTyrSerI : 20 |||||||||!!:.!! !|||!.!||| !!.!! ! ! !:!! !|||!!:||||||: MetThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerL 256602 : ATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTC : 256659 21 : leLysLeuSerArgTrpTyrLeuLysProLeuGlyAlaTrpProAlaSerSerSerTh : 39 !!:!!|||!:!||||||!:!|||||||||:!!|||||||||||| !!||||||||||| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 256660 : TCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCAC : 256716 40 : rThrLysMetGluArgIleIleSerGlnIleLeuIleValIleCysTrpCysIleIle : 58 ||||! :!:||||||! !:!!||| :!!|||! !:!!:!!|||!:: !! !||| rThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIle 256717 : TACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATA : 256773 59 : LeuPheThrValIleProGlyIleLeuTyrIleLeuPheValLysGlnAspIleTyrV : 78 |||||||||:!!|||||| !!:!:|||:!!:!!!!!.!!! ! ! .!...!.!!|||: LeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrM 256774 : TTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAca : 256833 79 : alLysLeuLysIlePheGlyProLeuSerHisTrpCysIleAspGlyPheAsnTyrAl : 97 ::|||:::||| |||||||||:!!||||||||| !|||..! !! !||||||.! etLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrTh 256834 : tgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACAC : 256890 98 : aIleLeuLeuLeuArgLysAsnAspIleLeuHisCysIleGluHisLeuArgAlaAsp : 116 !:!:|||||||||!:! !!!.||||||! !:!!|||:!!||||||:!!..!.!!||| rLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAsp 256891 : GTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGAT : 256947 117 : TrpLysLeuIleThrArgThrGlnAspGlnGlnValMetLeuArgAsnAlaLysMetG : 136 |||!:!:!!:!:! !||| !:!!|||||||||||||||:!!!:!||||||!:!.!.| TrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheG 256948 : TGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCG : 257007 137 : lyArgTyrIleAlaAlaPheCysAlaIlePheMetGlnValIleIlePhePheThrCy : 155 ||||||||:!:|||.!!||||||||| !.!!|||||| ! !:::||| lyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePh 257008 : GTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttctt : 257064 156 : sPheIleLeuGlyIlePheLysArgSerIleHisIleAspAsnLysThrValGluLeu : 174 ! !!.!:!: !! !..!! !||||||:!:! |||:!!|||..! :!! eValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleVal 257065 : cgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTG : 257121 175 : TyrAsnLeuProCysProAlaTyrLysIleProPheAspThrAspProThr<->IleH : 193 |||||| ! !!!.!||||||! ! !!!.:!!..!|||! !!:! ! : ArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrA 257122 : CGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGA : 257181 194 : isAspIleMetLeuGlyThrGlnPheLeuSerAlaPheValValSerSerSerAlaSe : 212 !!!!:|||:!!:!! !! !||| !! !|||:!!.!!:!!!.!!!!!!!|||.!! snGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrVa 257182 : ACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGT : 257238 213 : rAlaSerPheThrLeuAlaThrIlePheThrCysHisValLeuGlyGlnLeuAsnIle : 231 !::!! !|||!:!||||||.!!:!!|||.!! !|||!.!! !|||||||||!.!:!: lSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrVal 257239 : TAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTG : 257295 232 : MetMetIleTrpIleAsnGluPheValAspArgLeuGlnArgLysGluAsnLysAspA : 251 :!:||| ||||||!..|||||||||:!!..!! !::!!.!:::||| ||| LeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGlu---LysThrP 257296 : CTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggag---aaaacgt : 257352 252 : snHisIleAsnLysIleGlyValIleValGluHisHisLeuArgIleLeu : 267 ..!!!.:!!||||||||||||||||||||||||||||||:!:||| heProPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu 257353 : ttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG : 257402 vulgar: AmOr50 0 267 . KQ414889.1 256601 257402 + 596 M 191 573 G 0 3 M 56 168 G 1 0 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256602 257402 596 + . gene_id 6 ; sequence AmOr50 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256602 257402 . + . KQ414889.1 exonerate:protein2genome:local exon 256602 257402 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 256602 257402 596 + . alignment_id 6 ; Query AmOr50 ; Align 256602 1 573 ; Align 257178 192 168 ; Align 257346 249 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 465 Query range: 15 -> 276 Target range: 236846 -> 237623 16 : SerGluTyrSerIleLysLeuSerArgTrpTyrLeuLysProLeuGlyAlaTrpProA : 35 |||!!:||||||:!!:!!! !!:!|||||| :!!||| !:!!|||.!!|||||| SerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProG 236847 : AGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCAC : 236904 36 : laSerSerSerThrThrLysMetGluArgIleIleSerGlnIleLeuIleValIleCy : 54 !! !|||||| !!.:!:||||||! !||||||!:!||||||! !|||||||| lnPheSerSer------AsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCy 236905 : AGTTCTCGTCG------AACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTG : 236955 55 : sTrpCysIleIleLeuPheThrValIleProGlyIleLeuTyrIleLeuPheValLys : 73 |!:: ! !|||||||||:!!:!!|||||| !! |||:!!:!!:!!.!.! !||| sTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLys 236956 : CTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAA : 237012 74 : GlnAspIleTyrValLysLeuLysIlePheGlyProLeuSerHisTrpCysIleAspG : 93 ! !.!!|||..!|||:!!||||||.!!||| !!|||||||||||| .!! ! GlyThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysI 237013 : GGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTA : 237072 94 : lyPheAsnTyrAlaIleLeuLeuLeuArgLysAsnAspIleLeuHisCysIleGluHi : 112 !.!!!:!|||.!!!!:||||||||||||:::!!. !|||! !|||! !.!!.!.|| leIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHi 237073 : TCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCA : 237129 113 : sLeuArgAlaAspTrpLysLeuIleThrArgThrGlnAspGlnGlnValMetLeuArg : 131 |:!!..!.!!||||||!:! !! |||||| ::: ::::::|||||||||!:! sMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLys 237130 : TATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAG : 237186 132 : AsnAlaLysMetGlyArgTyrIleAlaAlaPheCysAlaIlePheMetGlnValIleI : 151 !!||||||.!..!!|||||| ||| !! !|||.!!||||||!!:!!.! ! !| TyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyI 237187 : TACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTA : 237246 152 : lePhePheThrCysPheIleLeuGlyIlePheLysArgSerIleHisIleAspAsnLy : 170 ||.!! !||| !!!!: !!.! ! !! !! ! !:!! :!!! ||||| leLeuGlyTyrCysValMetThrAlaSerThrThrMetValValValValGlyAsnLy 237247 : TACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAA : 237303 171 : sThrValGluLeuTyrAsnLeuProCysProAlaTyrLysIleProPheAspThrAsp : 189 ||||..! ||| ! ||||||! ||| !|||||| ! !.!! ..!||| sThrThrIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAsp 237304 : GACTACGATCTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGAT : 237360 190 : Pro<->ThrIleHisAspIleMetLeuGlyThrGlnPheLeuSerAlaPheValValS : 208 !! |||!!::!!||||||:!::!! !:!!||||||||||||!.!|||:!!!.!! ThrAsnThrMetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaA 237361 : ACGAATACTATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGA : 237420 209 : erSerSerAlaSerAlaSerPheThrLeuAlaThrIlePheThrCysHisValLeuGl : 227 :!!:!||||||! !::! !.!.!:!|||.!!!:! !.!.|||! |||!.!! !|| snAsnSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGl 237421 : ACAACAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGG : 237477 228 : yGlnLeuAsnIleMetMetIleTrpIleAsnGluPheValAspArgLeuGlnArgLys : 246 |||||||!:!:!::!:|||:!:! !|||.!.!!:||||||..!..! !::!|||!:! yGlnLeuSerValValMetLeuSerIleGluAspPheValSerGluAlaArgArgArg 237478 : CCAGTTGAGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGA : 237534 247 : GluAsnLysAspAsnHisIleAsnLysIleGlyValIleValGluHisHisLeuArgI : 266 ...||||||:!!|||.!!:!!:!!||| !..!|||||||||.!.|||||||||: ---GlyLysAspAspHisPheAspGluIleProThrIleValGluGluHisLeuArgV 237535 : ---GGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAG : 237591 267 : leLeuSerLeuIleAlaArgIleGluArgIle : 276 !:|||!.!! !:!!..! !:!:!!: !||| alLeuLys***ValCysLeuLeuAspLeuIle 237592 : TGTTGAAGTAAGTATGTTTGTTGGATTTGATT : 237623 vulgar: AmOr50 15 276 . KQ414889.1 236846 237623 + 465 M 23 69 G 2 0 M 150 450 G 0 3 M 56 168 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236847 237623 465 + . gene_id 7 ; sequence AmOr50 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236847 237623 . + . KQ414889.1 exonerate:protein2genome:local exon 236847 237623 . + . insertions 3 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 236847 237623 465 + . alignment_id 7 ; Query AmOr50 ; Align 236847 16 69 ; Align 236916 41 450 ; Align 237369 191 168 ; Align 237537 248 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 357 Query range: 296 -> 406 Target range: 258249 -> 258738 297 : TyrTyrPheLeuAlaGluTrpSerGluArgAsnIleGlnAsnLeuThrIleTyrValM : 316 :::|||:::... ||||||||| !!:::::||||||||||||::: ||| !!| PheTyrTyrPheGlnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheM 258250 : ttttattattttcaggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTA : 258307 317 : etValAlaLeuSerMetSerPheAsnIleLeuLeuValCysCysIleGlyGluIleLe : 335 ||:!! !:!!|||:::||||||||||||...::::::||| !|||||||||||||| etIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLe 258308 : TGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATT : 258364 336 : uArgGluGln >>>> Target Intron 1 >>>> CysLysLysValGlyAspM : 345 |! !|||||| 90 bp ||||||||||||||||||: uThrGluGln++ ++CysLysLysValGlyAspV 258365 : AACAGAACAGgt.........................agTGCAAGAAAGTTGGCGACG : 258484 346 : etValTyrMetThrAsnTrpTyrGlnLeuProAspLysAspIleLeuAsnLeuIleMe : 364 !!||||||||||||:!!|||||| ! |||||||||||| ||||||:!!||||||:! alValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLe 258485 : TGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTT : 258541 365 : tIleIleSerArgSerSerValGluValLysIleThrAlaGlyLysIleIleThrMet : 383 !:!!|||:!!||||||||||||! |||:!!|||||||||||||||...... ||| uValIleAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePheHisMet 258542 : GGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatG : 258598 384 : SerIleTyrThrPheGlyAsn >>>> Target Intron 2 >>>> IleValLy : 393 |||||||||||||||.!!:!! 69 bp :!!:!!|| SerIleTyrThrPheSerAsp++ ++ValIleLy 258599 : TCCATTTACACATTCAGCGATgt.........................agGTAATAAA : 258697 394 : sThrValPheAlaTyrLeuAsnMetLeuArgGlnIleThr : 406 |||| !|||||||||||||||:!:|||||||||:!!:!! sThrSerPheAlaTyrLeuAsnLeuLeuArgGlnValSer 258698 : AACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGTATCG : 258738 vulgar: AmOr50 296 406 . KQ414889.1 258249 258738 + 357 M 42 126 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258250 258738 357 + . gene_id 8 ; sequence AmOr50 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 258250 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258250 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258250 258738 357 + . alignment_id 8 ; Query AmOr50 ; Align 258250 297 126 ; Align 258466 339 156 ; Align 258691 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 346 Query range: 298 -> 406 Target range: 272827 -> 273302 299 : PheLeuAlaGluTrpSerGluArgAsnIleGlnAsnLeuThrIleTyrValMetValA : 318 |||... ||||||!!!!!:!.!:!!.!!|||!:!||||||! ||| !!|||:!! PhePhe***GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleL 272828 : tttttctaggAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATAC : 272885 319 : laLeuSerMetSerPheAsnIleLeuLeuValCysCysIleGlyGluIleLeuArgGl : 337 !:!!||||||:::|||||||||...:::||||||! !|||||||||||||||! !|| euIleSerMetThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGl 272886 : TTATATCCATgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGA : 272942 338 : uGln >>>> Target Intron 1 >>>> CysLysLysValGlyAspMetValT : 347 |::! 70 bp |||||||||:::|||!!::!:|||| uArg++ ++CysLysLysIleGlyGluValValT 272943 : GAGGgt.........................agtgtaaaaaaattggcGAGGTAGTTT : 273042 348 : yrMetThrAsnTrpTyrGlnLeuProAspLysAspIleLeuAsnLeuIleMetIleIl : 366 ||||||||||||||||| ! ||||||! !||||||||||||:!!||||||:!!||||| yrMetThrAsnTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIl 273043 : ACATGACGAACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCAT : 273099 367 : eSerArgSerSerValGluValLysIleThrAlaGlyLysIleIleThrMetSerIle : 385 |||||||!!!||||||! !:!!|||||||||||||||!:!|||:!! !!||||||:!: eSerArgCysSerValValIleLysIleThrAlaGlyArgIleValProMetSerVal 273100 : CTCAAGATGCAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTG : 273156 386 : TyrThrPheGlyAsn >>>> Target Intron 2 >>>> IleValLysThrVa : 395 ||||||||||||:!! 81 bp ::::!!|||!:!!. TyrThrPheGlyAsp++ ++ValMetLysSerAl 273157 : TACACGTTCGGCGATgt.........................aggtGATGAAAAGTGC : 273267 396 : lPheAlaTyrLeuAsnMetLeuArgGlnIleThr : 406 !|||||||||||||||||||||||||||! ||| aPheAlaTyrLeuAsnMetLeuArgGlnThrThr 273268 : GTTCGCGTACTTAAATATGCTACGACAAACGACA : 273302 vulgar: AmOr50 298 406 . KQ414889.1 272827 273302 + 346 M 40 120 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272828 273302 346 + . gene_id 9 ; sequence AmOr50 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272828 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272828 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272828 273302 346 + . alignment_id 9 ; Query AmOr50 ; Align 272828 299 120 ; Align 273018 339 156 ; Align 273255 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 339 Query range: 17 -> 267 Target range: 284523 -> 285285 18 : TyrSerIleLysLeuSerArgTrpTyrLeuLysProLeuGlyAlaTrpProAlaSerS : 37 ||||||:!!:!!:!!!:!||||||!:!|||||||||:!!|||!.!|||||| !||| TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 38 : erSerThrThrLysMetGluArgIleIleSerGlnIleLeuIleValIleCysTrpCy : 56 !!!!..!|||! :!!|||!:!|||! !||| !:!!||| :!!||| !!!! ! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 57 : sIleIleLeuPheThrValIleProGlyIleLeuTyrIleLeuPheValLysGln<-> : 75 !:!:||| !||| !:!!:!!||| !! !|||! !! !:!!.!!! !||| eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 76 : AspIleTyrValLysLeuLysIlePheGlyProLeuSerHisTrpCysIleAspGlyP : 94 |||:!! !!..!|||:!!|||!!:.!!|||||||||||| !!! !!:! !.!. AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 95 : heAsnTyrAlaIleLeuLeuLeuArgLysAsnAspIleLeuHisCysIleGluHisLe : 113 !!!!.||| !||||||:!!! !||| ..! ! ||| !!!.|||:!::!! !!:! leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 114 : uArgAlaAspTrpLysLeuIle<-><-><->ThrArgThrGlnAspGlnGlnValMet : 129 !||||||||||||...|||! !::::: :::::::::::::::||| eArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMet 284813 : TCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTG : 284869 130 : LeuArgAsnAlaLysMetGlyArgTyrIleAlaAlaPheCysAlaIlePheMetGlnV : 149 ! !!:!|||!:!!!:||||||! !:!:||| !||||||||| !|||||| ! ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrS 284870 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATT : 284929 150 : alIleIlePhePheThrCysPheIleLeuGlyIlePheLys<->ArgSerIleHisIl : 167 ! ! !|||||| ! ! :!::!! !:!:! !! ! |||!!! !|| erGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIl 284930 : CCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCAT : 284986 168 : eAspAsnLysThrValGluLeuTyrAsnLeuProCysProAlaTyrLysIleProPhe : 186 |||||||:!!||||||..!! ! ! !!!||| ! ! ! ! :!! ! eAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 284987 : CGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCG : 285043 187 : AspThrAspProThrIleHisAspIleMetLeuGlyThrGlnPheLeuSerAlaPheV : 206 !|||..!|||:!!.!! !!:|||:!!! ! !! !|||! !|||:!!||||||| ArgThrSerProSerPhe---GluIleValGlnPheMetGlnCysLeuAlaAlaPheV 285044 : CGTACCAGCCCGTCGTTC---GAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCG : 285100 207 : alValSerSerSerAlaSerAlaSerPheThrLeuAlaThrIlePheThrCysHisVa : 225 ||:!!! !||| !.!! !!.!:!!! !!:!||||||.!!:!:|||..! ||||| alIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisVa 285101 : TTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGT : 285157 226 : lLeuGlyGlnLeuAsnIleMetMetIleTrpIleAsnGluPheValAspArgLeuGln : 244 |! !||||||!!!!..|||:!::!!! ! !:!::!!:!!.!!|||||| !!:!!:!! lCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLys 285158 : CTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAA : 285214 245 : ArgLysGluAsnLysAspAsnHisIleAsnLysIleGlyValIleValGluHisHisL : 264 !!!:!:!!... !..!!..||| !.!.::!:!:|||! !|||:!!|||||||||| GlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisL 285215 : GGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATC : 285274 265 : euArgIleLeu : 267 ||!:!|||||| euLysIleLeu 285275 : TGAAGATACTG : 285285 vulgar: AmOr50 17 267 . KQ414889.1 284523 285285 + 339 M 57 171 G 0 3 M 46 138 G 0 9 M 42 126 G 0 3 M 30 90 G 1 0 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 285285 339 + . gene_id 10 ; sequence AmOr50 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284524 285285 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 285285 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284524 285285 339 + . alignment_id 10 ; Query AmOr50 ; Align 284524 18 171 ; Align 284698 75 138 ; Align 284845 121 126 ; Align 284974 163 90 ; Align 285064 194 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 338 Query range: 18 -> 270 Target range: 217177 -> 217930 19 : SerIleLysLeuSerArgTrpTyrLeuLysProLeuGlyAlaTrpProAlaSerSerS : 38 ||||||:!!! !!:!||||||! |||||||||:!!||| !|||||| !||| !!! SerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnSerArgT 217178 : aGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACTCACGTA : 217235 39 : erThrThrLysMetGluArgIleIleSerGlnIleLeuIleValIleCysTrpCysIl : 57 !!||||||!:! ..!!:!|||:!!! !:!!:!::!!! !!.!:!!|||!:: !!:! hrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTyrGlyLe 217236 : CCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTACGGTTT : 217292 58 : eIleLeuPheThrValIleProGlyIleLeuTyrIleLeuPheValLysGlnAspIle : 76 :||| !||| ! !!:!!||| !! !:!!|||:!:!!!.!!! ! :!!|||:!! uIleSerPheLeuPheValProCysSerMetTyrValPheLeuGluValGluAspLeu 217293 : GATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAGATCTC : 217349 77 : TyrValLysLeuLysIlePheGlyProLeuSerHisTrpCysIleAspGlyPheAsnT : 96 |||! !|||||||||:!:||||||||||||! ! !!! !!:! ! !!!!.| TyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValMetAlaPheValLysT 217350 : TACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGT : 217409 97 : yrAlaIleLeuLeuLeuArgLysAsnAspIleLeuHisCysIleGluHisLeuArgAl : 115 || ! !|||:!!:!!!.!||| ||||||! !.!.|||:!:..!...:!!..! yrTyrSerLeuIleValHisLysAlaAspIleArgGluCysValArgArgIleGluAr 217410 : ATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACG : 217466 116 : aAspTrpLysLeuIleThrArgThrGlnAspGlnGlnValMetLeuArgAsnAlaLys : 134 !||||||!:! !:!!! ! !! !:!!|||::!:!!!.!|||:!! !||||||!!. gAspTrpArgAsnValArgCysGluLysAspArgGluAlaMetIleValAsnAlaAsn 217467 : GGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAAT : 217523 135 : MetGlyArgTyrIleAlaAlaPheCysAlaIlePheMetGlnValIleIlePhePheT : 154 .!.|||||| ! :!:!.! !.!!|||.!!.!!|||||| ! ! ... ||| PheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheValPheT 217524 : TTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcgtttttt : 217583 155 : hrCysPheIleLeuGlyIlePheLysArgSerIleHisIleAspAsnLysThrValGl : 173 ..! !:!! !||| ! ! !!!!!|||! !!:||| !!.!:!! yrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuTh 217584 : attacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTAC : 217640 174 : uLeuTyrAsnLeuProCysProAlaTyrLysIleProPheAspThrAspProThr<-> : 192 !!! ! ||| !! !||| ! ||| ! !.!!|||||| ! !||| rPheIleProLeuValPheProPheThrLysTyrIleIleAspThrArgTyrThrPro 217641 : CTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCT : 217697 193 : IleHisAspIleMetLeuGlyThrGlnPheLeuSerAlaPheValValSerSerSerA : 211 ! :!!!!:|||:!!!!! ! !|||!!.:!!:!!!.! !:!!:!! !.!!! !. ThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleT 217698 : ACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCA : 217757 212 : laSerAlaSerPheThrLeuAlaThrIlePheThrCysHisValLeuGlyGlnLeuAs : 230 !!||||||:!!! !!:!||||||.!! !|||.!! !|||!.!! !||||||:!!.! hrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGl 217758 : CGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGA : 217814 231 : nIleMetMetIleTrpIleAsnGluPheValAspArgLeuGlnArgLysGluAsnLys : 249 .:!::!!|||! !|||:!:.!..!.!!.:!!||| ||| !!!:! !.. uValLeuMetAsnTrpLeuGlnHisLeuIleAsp------GlyArgAlaAspMetSer 217815 : GGTGTTGATGAACTGGCTGCAACATTTAATCGAC------GGTAGAGCGGATATGAGC : 217865 250 : AspAsnHisIleAsnLysIleGlyValIleValGluHisHisLeuArgIleLeuSerL : 269 |||!.! !..!!:!|||!.! !||||||...!!.|||:!!|||||||||!.!! AspThrValAspGlyArgIleAlaSerIleValSerGlnHisValArgIleLeuLysC 217866 : GATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTAAAGT : 217925 270 : euIle : 270 !:!! ysVal 217926 : GTGTA : 217930 vulgar: AmOr50 18 270 . KQ414889.1 217177 217930 + 338 M 173 519 G 0 3 M 50 150 G 2 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217178 217930 338 + . gene_id 11 ; sequence AmOr50 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217178 217930 . + . KQ414889.1 exonerate:protein2genome:local exon 217178 217930 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 217178 217930 338 + . alignment_id 11 ; Query AmOr50 ; Align 217178 19 519 ; Align 217700 192 150 ; Align 217850 244 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 337 Query range: 18 -> 273 Target range: 226933 -> 227695 19 : SerIleLysLeuSerArgTrpTyrLeuLysProLeuGlyAlaTrpProAlaSerSerS : 38 ||||||:!!|||!:!|||||| ||||||||||||||| !||||||:!!||| !!! SerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgL 226934 : AGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCA : 226991 39 : erThrThrLysMetGluArgIleIleSerGlnIleLeuIleValIleCysTrpCysIl : 57 .!!:!:!!::!!!:! !||| !.!!||| !:!::!! ! !!:!!|||!::...:! ysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLe 226992 : AAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCT : 227048 58 : eIleLeuPheThrValIleProGlyIleLeuTyrIleLeuPheValLysGlnAspIle : 76 :!!: !||| !:!!:!! !!.!! !||||||:!::!!.!.! ! !:!!! ! ! uMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAla 227049 : GATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCT : 227105 77 : TyrValLysLeuLysIlePheGlyProLeuSerHisTrpCysIleAspGlyPheAsnT : 96 ||| !! !||||||!!:.!!||||||:!!||| !!::...!!:..! !.!!!!.| TyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuLysT 227106 : TACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGT : 227165 97 : yrAlaIleLeuLeuLeuArgLysAsnAspIleLeuHisCysIleGluHisLeuArgAl : 115 ||:!!!!:||| !!!!!.!:!!:!!|||||||||.!.|||:!!|||!..:!!!:! yrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIleLysTr 227166 : ACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATG : 227222 116 : aAspTrpLysLeuIleThrArgThrGlnAspGlnGlnValMetLeuArgAsnAlaLys : 134 !||||||||| !|||! ! ! !:!!|||::!.!.||||||:!!! ! !!||| ! pAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyr 227223 : GGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTAT : 227279 135 : MetGlyArgTyrIleAlaAlaPheCysAlaIlePheMetGlnValIleIlePhePheT : 154 |||||| ! :!: !.!!.!!|||.!!.!!|||:!: ... ||| TyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheValPheP 227280 : TACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttt : 227339 155 : hrCysPheIleLeuGlyIlePheLysArgSerIleHisIleAspAsnLysThrValGl : 173 .!!:!!:!! !||| ! !!|||:!! ! !!::!! !!.! !.. heTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSe 227340 : tctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAG : 227396 174 : uLeuTyrAsnLeuProCysProAlaTyrLysIleProPheAspThrAsp<->ProThr : 191 .! ! !.!.:!!|||! !||| ! |||||| ! !|||..! ! ! !! rTyrIleGlnMetProPheProPheProLysIleIleAlaAspValArgTyrSerPro 227397 : TTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCT : 227453 192 : IleHisAspIleMetLeuGlyThrGlnPheLeuSerAlaPheValValSerSerSerA : 211 .!!:!!!!:|||.!.!!!..!..!||||||:!!!!!!.!.!!|||:!! !.!! !. PheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuHisGlyValT 227454 : TTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCA : 227513 212 : laSerAlaSerPheThrLeuAlaThrIlePheThrCysHisValLeuGlyGlnLeuAs : 230 !!||||||:!!! !!:!:!!|||.!!:!:.!!.!! !|||!.!! !||||||:!!.! hrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGl 227514 : CGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGA : 227570 231 : nIleMetMetIleTrpIleAsnGluPheValAspArgLeuGlnArgLysGluAsnLys : 249 .:!::!!:!! !|||:!:....!.!!.:!!||| ||| !!!:! !.. uValLeuValSerTrpLeuGlyHisLeuIleAsp------GlyArgAlaAspMetSer 227571 : GGTGTTGGTGTCCTGGCTGGGACATTTGATCGAC------GGCAGAGCGGATATGAGC : 227621 250 : AspAsnHisIleAsnLysIleGlyValIleValGluHisHisLeuArgIleLeuSerL : 269 ! !..! !:!!!:!|||!.! !|||||| ||||||:!!|||||||||!.!! LysThrLeuAspAspArgIleAlaSerIleValThrHisHisValArgIleLeuLysC 227622 : AAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACCACGTTCGAATATTGAAGT : 227681 270 : euIleAlaArgIle : 273 !:!!.!! !!||| ysValThrCysIle 227682 : GTGTAACGTGTATC : 227695 vulgar: AmOr50 18 273 . KQ414889.1 226933 227695 + 337 M 171 513 G 0 3 M 52 156 G 2 0 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226934 227695 337 + . gene_id 12 ; sequence AmOr50 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226934 227695 . + . KQ414889.1 exonerate:protein2genome:local exon 226934 227695 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 226934 227695 337 + . alignment_id 12 ; Query AmOr50 ; Align 226934 19 513 ; Align 227450 190 156 ; Align 227606 244 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 313 Query range: 17 -> 267 Target range: 278576 -> 279338 18 : TyrSerIleLysLeuSerArgTrpTyrLeuLysProLeuGlyAlaTrpProAlaSerS : 37 ||||||:!!:!!:!!!:!||||||!:!|||||||||:!!|||!.!|||||| !||| TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 38 : erSerThrThrLysMetGluArgIleIleSerGlnIleLeuIleValIleCysTrpCy : 56 !!!!..!|||! :!!|||!:!|||! !||| !:!!||| :!!||| !!!! ! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 57 : sIleIleLeuPheThrValIleProGlyIleLeuTyrIleLeuPheValLysGln<-> : 75 !:!:||| !||| !:!!:!!||| !! !|||! !! !:!!.!!! !||| eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 76 : AspIleTyrValLysLeuLysIlePheGlyProLeuSerHisTrpCysIleAspGlyP : 94 |||:!! !!..!|||:!!|||!!:.!!|||||||||||| !!! !!:! !. AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 95 : heAsnTyrAlaIleLeuLeuLeuArgLysAsnAspIleLeuHisCysIleGluHisLe : 113 !!!!.||| !||||||:!!! !||| ..! ! ||| ! ! |||:!:.!. !!:! leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 114 : uArgAlaAspTrpLysLeu<-><-><->IleThrArgThrGlnAspGlnGlnValMet : 129 !|||.!!||||||...||| ! ::: :::::::::::::::||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 130 : LeuArgAsnAlaLysMetGlyArgTyrIleAlaAlaPheCysAlaIlePheMet<->G : 148 ! !!:!|||!:!!!:||||||! !:!:||| !||| !!||| !|||||| . ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 149 : lnValIleIlePhePheThrCysPheIleLeuGlyIlePheLysArgSerIleHisIl : 167 ..! ! !:!!|||!:!|||..! ! !!:! ! !.!! !|||!!! !|| erGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIl 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCAT : 279039 168 : eAspAsnLysThrValGluLeuTyrAsnLeuProCysProAlaTyrLysIleProPhe : 186 |||||||:!!||||||..!! ! ! !!!||| ! ! ! ! :!! ! eAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 279040 : CGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCG : 279096 187 : AspThrAspProThrIleHisAspIleMetLeuGlyThrGlnPheLeuSerAlaPheV : 206 !|||..!|||:!!.!! !!:|||:!!! ! !! !|||! !|||:!!||||||| ArgThrSerProSerPhe---GluIleValGlnPheMetGlnCysLeuAlaAlaPheV 279097 : CGTACCAGCCCGTCGTTC---GAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCG : 279153 207 : alValSerSerSerAlaSerAlaSerPheThrLeuAlaThrIlePheThrCysHisVa : 225 ||:!!! !||| !.!! !!.!:!!! !!:!||| !.!!:!:|||..! ||||| alLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisVa 279154 : TTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGT : 279210 226 : lLeuGlyGlnLeuAsnIleMetMetIleTrpIleAsnGluPheValAspArgLeuGln : 244 |! !||||||!!!!..|||:!::!!! ! !:!::!!:!!.!!:!!||| !!:!!:!! lCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLys 279211 : CTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAA : 279267 245 : ArgLysGluAsnLysAspAsnHisIleAsnLysIleGlyValIleValGluHisHisL : 264 !!!:!:!!!:! !..!!..||| !.!.::!:!:|||! !|||:!!|||||||||| GlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisL 279268 : GGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATC : 279327 265 : euArgIleLeu : 267 ||!:!|||||| euLysIleLeu 279328 : TGAAGATACTG : 279338 vulgar: AmOr50 17 267 . KQ414889.1 278576 279338 + 313 M 57 171 G 0 3 M 45 135 G 0 9 M 28 84 G 0 3 M 45 135 G 1 0 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 279338 313 + . gene_id 13 ; sequence AmOr50 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278577 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279338 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278577 279338 313 + . alignment_id 13 ; Query AmOr50 ; Align 278577 18 171 ; Align 278751 75 135 ; Align 278895 120 84 ; Align 278982 148 135 ; Align 279117 194 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 267 Query range: 17 -> 267 Target range: 303196 -> 304866 18 : TyrSerIleLysLeuSerArgTrpTyrLeuLysProLeuGlyAlaTrpProAlaSerS : 37 ||| !! !|||! !|||!:!||| !|||||| !!|||||| !||||||||| !! TyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTrpProAlaValL 303197 : TACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTGGCCAGCCGTGT : 303254 38 : erSerThrThrLysMetGluArgIleIleSerGlnIleLeuIleValIleCysTrpCy : 56 !..! !||| ! ! !!.!!:!! !!:!!||| !|||! !:!! !! ! euAspGluThr------AlaGlyPheLeuProLysIleThrIleGlyLeuSerAsnLe 303255 : TGGACGAAACC------GCAGGATTCCTACCAAAAATCACCATTGGACTCAGTAATTT : 303305 57 : sIleIleLeuPheThrValIleProGlyIleLeuTyrIleLeuPheValLysGlnAsp : 75 :!!:!!|||||||||||||||||| !!||||||:!!|||:!!|||! !:!!:!!||| uValLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnLysAsp 303306 : GGTTCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAAAGGAT : 303362 76 : IleTyrValLysLeuLysIlePheGlyProLeuSerHisTrpCysIleAspGlyPheA : 95 ! :!!!:!||||||:!!||||||! !|||||| !!! ! |||... !.!.! ThrIleIleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLeuMetL 303363 : ACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTTGATGA : 303422 96 : snTyrAlaIleLeuLeuLeuArgLysAsnAspIleLeuHisCysIleGluHisLeuAr : 114 !.||| ! !||| ! !|||||| ||| !.!.|||||||||.!.:!!!: ysTyrTrpAlaLeuAlaThrArgLysProArgIleLysGluCysIleGluGluValGl 303423 : AGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAGGTGCA : 303479 115 : gAlaAspTrpLysLeu >>>> Target Intron 1 >>>> IleThrArgThrG : 124 !::!||||||||| ! 938 bp :!: ! ! !: nSerAspTrpLysGlu++ ++ValGluSerLeuA 303480 : AAGTGATTGGAAAGAGgt.........................agGTGGAATCTCTCA : 304447 125 : lnAspGlnGlnValMetLeuArgAsnAlaLysMetGlyArgTyrIleAlaAlaPheCy : 143 :!|||!:::!!:!!||||||!:! !!!.!:!!||||||||| !!:!:.!! !.!!|| rgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIleCy 304448 : GAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAATCTG : 304504 144 : sAlaIlePheMetGlnValIleIlePhePheThrCysPheIleLeuGlyIlePheLys : 162 ||||||||||||| ! ..! ! ! !.!! ! ! :!!:!! ! ||| ! sAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGln---PheAla 304505 : CGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAG---TTCGCG : 304558 163 : ArgSerIleHisIleAspAsnLysThrValGluLeuTyrAsnLeuProCysProAlaT : 182 ! !.!!! :!!:!:|||.!. ! !.! ! !:!! ! ||| !! !|||.!!| ThrGlyThrTyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProThrT 304559 : ACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACCT : 304618 183 : yrLysIleProPheAspThrAspProThr<->IleHisAspIleMetLeuGlyThrGl : 200 ||!.. ! !||||||..!.!. !!!:! |||:!!!!::!::!:! ! !..!!! yrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheValHi 304619 : ACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCA : 304675 201 : nPheLeuSerAlaPheValValSerSerSerAlaSerAlaSerPheThrLeuAlaThr : 219 .! !:!!!!!!.!!:!|||:!!! !|||! !.!!:!!!.!:!!! ! !||||||.!! sCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAla 304676 : TTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCT : 304732 220 : IlePheThrCysHisValLeuGlyGlnLeuAsnIleMetMetIleTrpIleAsnGluP : 239 :!!|||.!! |||!.!! !||||||:!!:!!|||:!:||| ! ! :!:..!!!:. LeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAspL 304733 : CTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGATC : 304792 240 : heValAspArgLeuGlnArgLysGluAsnLysAspAsnHisIleAsnLysIleGlyVa : 258 !!|||:!! !!!||||||:::...||| !! !!.::!:!! !! euValAsn---------SerLysGluSerSerAspLeuAsp---LysArgLeuIleGl 304793 : TTGTCAAC---------AGCAAAGAATCATCTGATTTAGAT---AAACGATTAATAGA : 304837 259 : lIleValGluHisHisLeuArgIleLeu : 267 !||||||||||||||||||||||||||| uIleValGluHisHisLeuArgIleLeu 304838 : AATTGTTGAGCATCATTTGCGAATTTTA : 304866 vulgar: AmOr50 17 267 . KQ414889.1 303196 304866 + 267 M 23 69 G 2 0 M 77 231 5 0 2 I 0 934 3 0 2 M 40 120 G 1 0 M 31 93 G 0 3 M 50 150 G 3 0 M 8 24 G 1 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303197 304866 267 + . gene_id 14 ; sequence AmOr50 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303197 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303197 303496 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304866 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304866 . + . insertions 3 ; deletions 5 KQ414889.1 exonerate:protein2genome:local similarity 303197 304866 267 + . alignment_id 14 ; Query AmOr50 ; Align 303197 18 69 ; Align 303266 43 231 ; Align 304435 120 120 ; Align 304555 161 93 ; Align 304651 192 150 ; Align 304801 245 24 ; Align 304825 254 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 237 Query range: 337 -> 406 Target range: 254271 -> 254567 338 : GlnCysLysLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspL : 357 |||||| !|||||||||!!::!!||||||||||||:!!|||||| ! ||||||.!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 358 : ysAspIleLeuAsnLeuIleMetIleIleSerArgSerSerValGluValLysIleTh : 376 :! ||||||:!!||||||:!!||||||!!!||||||!:!|||! |||:!!||||| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 377 : rAlaGlyLysIleIleThrMetSerIleTyrThrPheGlyAsn >>>> Target I : 391 |||||||||||||... ||||||:!!||||||||||||:!! 89 rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt............. : 254433 392 : ntron 1 >>>> IleValLysThrValPheAlaTyrLeuAsnMetLeuArgGlnIl : 405 bp :!!|||||||||! !||||||||||||||||||||| !!|||!! ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMe 254434 : ............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAAAT : 254562 406 : eThr : 406 ::!! tSer 254563 : GTCC : 254567 vulgar: AmOr50 337 406 . KQ414889.1 254271 254567 + 237 M 53 159 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254567 237 + . gene_id 15 ; sequence AmOr50 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254272 254430 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254430 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254431 254432 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254431 254519 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254518 254519 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254520 254567 . + . KQ414889.1 exonerate:protein2genome:local exon 254520 254567 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254567 237 + . alignment_id 15 ; Query AmOr50 ; Align 254272 338 159 ; Align 254520 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 235 Query range: 336 -> 396 Target range: 277548 -> 277728 337 : GluGlnCysLysLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProA : 356 ..!||||||||||||||||||!!::!!||||||||||||||||||||| ! ||||||| ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 357 : spLysAspIleLeuAsnLeuIleMetIleIleSerArgSerSerValGluValLysIl : 375 ||||||||||||||||||||:!!:!:||||||||||||||||||::: :::||||| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 376 : eThrAlaGlyLysIleIleThrMetSerIleTyrThrPheGlyAsnIleValLysThr : 394 |||||||||||||:::||| ||||||:!:||||||||||||:!!:!! !..! ! eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspValArgSerLeu 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTACGTTCACTT : 277720 395 : ValPhe : 396 :!!||| LeuPhe 277721 : CTTTTT : 277728 vulgar: AmOr50 336 396 . KQ414889.1 277548 277728 + 235 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277728 235 + . gene_id 16 ; sequence AmOr50 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277549 277728 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277728 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277728 235 + . alignment_id 16 ; Query AmOr50 ; Align 277549 337 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 233 Query range: 337 -> 406 Target range: 244655 -> 244951 338 : GlnCysLysLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspL : 357 |||||| !|||||||||!!::!!||||||||||||:!!|||||| ! ||||||.!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 358 : ysAspIleLeuAsnLeuIleMetIleIleSerArgSerSerValGluValLysIleTh : 376 :! ||||||:!!||||||:!!||||||!.!||||||!:!:!!! |||:!!||||| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 377 : rAlaGlyLysIleIleThrMetSerIleTyrThrPheGlyAsn >>>> Target I : 391 ||||||||||:!!:!! !||||||:!!||||||||||||:!! 89 rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAsp++ 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATgt............. : 244817 392 : ntron 1 >>>> IleValLysThrValPheAlaTyrLeuAsnMetLeuArgGlnIl : 405 bp :!!|||||||||! !||||||||||||||||||||| !!|||!! ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMe 244818 : ............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAAAT : 244946 406 : eThr : 406 ::!! tSer 244947 : GTCC : 244951 vulgar: AmOr50 337 406 . KQ414889.1 244655 244951 + 233 M 53 159 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244951 233 + . gene_id 17 ; sequence AmOr50 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244656 244814 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244814 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244815 244816 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244815 244903 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244902 244903 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244904 244951 . + . KQ414889.1 exonerate:protein2genome:local exon 244904 244951 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244951 233 + . alignment_id 17 ; Query AmOr50 ; Align 244656 338 159 ; Align 244904 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 229 Query range: 337 -> 404 Target range: 264723 -> 265004 338 : GlnCysLysLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspL : 357 ||||||||||||||||||!!::!!|||||||||:!!||||||||| ! |||||| !!| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 358 : ysAspIleLeuAsnLeuIleMetIleIleSerArgSerSerValGluValLysIleTh : 376 |||||||||||:!!||||||:!:||||||! !||||||||||||! ! !!|||.!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 377 : rAlaGlyLysIleIleThrMetSerIleTyrThrPheGlyAsn >>>> Target I : 391 |||||||||||||:!! !||||||!!:|||||||||.!!:!! 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 392 : ntron 1 >>>> IleValLysThrValPheAlaTyrLeuAsnMetLeuArgGln : 404 bp :!!:!!|||:!! !|||.!!|||||||||:!:||||||||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArgGln 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGCCAA : 265004 vulgar: AmOr50 337 404 . KQ414889.1 264723 265004 + 229 M 53 159 5 0 2 I 0 76 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265004 229 + . gene_id 18 ; sequence AmOr50 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265004 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265004 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265004 229 + . alignment_id 18 ; Query AmOr50 ; Align 264724 338 159 ; Align 264963 391 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 222 Query range: 336 -> 403 Target range: 283273 -> 283558 337 : GluGlnCysLysLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProA : 356 ..!||||||||||||||||||!!::!!|||||||||||||||! !!:! ! ||||||| ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 357 : spLysAspIleLeuAsnLeuIleMetIleIleSerArgSerSerValGluValLysIl : 375 ||||||||||||||||||||:!!:!:||||||||||||||||||::: :::||||| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 376 : eThrAlaGlyLysIleIleThrMetSerIleTyrThrPheGlyAsn >>>> Targe : 391 |||||||...|||:::||| |||||| |||||||||! !:!! eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAsp++ 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATgt.......... : 283438 392 : t Intron 1 >>>> IleValLysThrValPheAlaTyrLeuAsnMetLeuArg : 403 84 bp !:!!:!!|||..!|||||||||||||||:::|||||| ++AlaIleGluThrThrPheAlaTyrLeuAsnIleLeuArg 283439 : ...............agGCAATAGAAACCACTTTCgcgtatttaaatattctacgC : 283558 vulgar: AmOr50 336 403 . KQ414889.1 283273 283558 + 222 M 54 162 5 0 2 I 0 80 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283558 222 + . gene_id 19 ; sequence AmOr50 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 283274 283435 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283435 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 283436 283437 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 283436 283519 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 283518 283519 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 283520 283558 . + . KQ414889.1 exonerate:protein2genome:local exon 283520 283558 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283558 222 + . alignment_id 19 ; Query AmOr50 ; Align 283274 337 162 ; Align 283520 391 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 208 Query range: 10 -> 247 Target range: 204215 -> 204923 11 : ArgSerAspAsnLeuSerGluTyrSerIleLysLeuSerArgTrpTyrLeuLysProL : 30 |||:!!!!:.!. ! !..!|||:!!! !:::!!! !!:! ! !||| ! !: ArgAlaGluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleV 204216 : AGGGCAGAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAG : 204273 31 : euGlyAlaTrpProAlaSerSerSerThrThrLysMetGluArgIleIleSerGlnIl : 49 !!|||||||||||| ! !! !!:!:!!:!! !.!. !|||:!!:!! !!!:!|| alGlyAlaTrpProIleProValAsnSerSerProPheThrArgLeuValArgArgIl 204274 : TCGGTGCGTGGCCGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAAT : 204330 50 : eLeuIleValIleCysTrpCysIleIleLeuPheThrValIleProGlyIleLeuTyr : 68 | ! !|||:!! !::: :::......... !:!!:!!||||||:!!|||||| eGluHisValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyr 204331 : AGAACACGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTAC : 204387 69 : IleLeuPheValLysGlnAspIleTyrValLysLeuLysIlePheGlyProLeuSerH : 88 :!:!!!.!. !:!!:!!:!! ! ! :!!:::|||||||||.!!||||||:!! !: ValPheLeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValA 204388 : GTGTTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGA : 204447 89 : isTrpCysIleAspGlyPheAsnTyrAlaIleLeuLeuLeuArgLysAsnAspIleLe : 107 !!!! !!|||.!. !|||!!.|||:!!:!!:!!|||! !|||! :!! ! |||! snCysSerIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGl 204448 : ACTGCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCA : 204504 108 : uHisCysIleGluHisLeuArgAlaAspTrpLysLeuIleThrArgThrGlnAspGln : 126 ! ! !!:!:.!. !:!!||| !|||||| :!! .!!! ! !:!!:!!!:! nLysSerLeuAsnThrIleArgArgAspTrp---IleGluAlaThrAspGluAsnArg 204505 : GAAGAGTTTGAACACCATCAGACGCGACTGG---ATAGAGGCTACGGATGAAAATCGG : 204558 127 : GlnValMetLeuArgAsnAlaLysMetGlyArgTyrIleAlaAlaPheCysAlaIleP : 146 !:!!.!.! ! !!!.||||||!!:|||||| :!: ! !.!!...||| ! LeuIlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaT 204559 : TTGATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCA : 204618 147 : heMetGlnValIleIlePhePheThrCysPheIleLeuGlyIlePheLysArgSerIl : 165 !||| ! ! ! ! !!!.! ! ! ! |||||| !:!:!!.!:! !!!!!|| hrMetTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIl 204619 : CTATGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGAT : 204675 166 : eHisIleAspAsnLysThrValGluLeuTyrAsnLeuProCysProAlaTyrLysIle : 184 | :!! ! ! !.!||| :!! ||||||||||||!.!||| ::: e---ValThrProAspAsnValThrIleArgProLeuProCysProValTyrPheVal 204676 : C---GTAACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgtt : 204729 185 : ProPheAspThrAspProThr<->IleHisAspIleMetLeuGlyThrGlnPheLeuS : 203 |||::: !.!.! !:!! ! !:!!!!:|||:!:!!! ! !|||.!!:!!: PhePheAsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetA 204730 : ttctttaacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGG : 204789 204 : erAlaPheValValSerSerSerAlaSerAlaSerPheThrLeuAlaThrIlePheTh : 222 !!!.!||||||..!! !:!! ! !|||!.!!!!! ! !:!!..!.!!:!:|||.. laGlyPheValThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheVa 204790 : CTGGTTTTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGT : 204846 223 : rCysHisValLeuGlyGlnLeuAsnIleMetMetIleTrpIleAsnGluPheValAsp : 241 ! !|||!.!! !.!!..!|||!..|||:!!:!!! ! !!!:|||! !.!!|||||| lLeuHisAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAsp 204847 : TCTCCACGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGAT : 204903 242 : ArgLeuGlnArgLysGlu : 247 !:! !.!.! !! ||| LysAlaAspMetThrGlu 204904 : AAGGCGGACATGACCGAG : 204923 vulgar: AmOr50 10 247 . KQ414889.1 204215 204923 + 208 M 107 321 G 1 0 M 47 141 G 1 0 M 25 75 G 0 3 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204216 204923 208 + . gene_id 20 ; sequence AmOr50 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204216 204923 . + . KQ414889.1 exonerate:protein2genome:local exon 204216 204923 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 204216 204923 208 + . alignment_id 20 ; Query AmOr50 ; Align 204216 11 321 ; Align 204537 119 141 ; Align 204678 167 75 ; Align 204756 192 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 198 Query range: 337 -> 397 Target range: 238625 -> 238805 338 : GlnCysLysLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspL : 357 |||||| !|||||||||!!::!!||||||||||||:!!|||||| ! ||||||.!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 358 : ysAspIleLeuAsnLeuIleMetIleIleSerArgSerSerValGluValLysIleTh : 376 :! ||||||:!!||||||:!!||||||!.!||||||!:!|||! ||||||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 377 : rAlaGlyLysIleIleThrMetSerIleTyrThrPheGlyAsnIleValLysThrVal : 395 ||||||||||:!!:!! !||||||:!!||||||||||||:!!:!! !:!!||| ! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 396 : PheAla : 397 .!!||| LeuAla 238798 : CTTGCT : 238805 vulgar: AmOr50 337 397 . KQ414889.1 238625 238805 + 198 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238805 198 + . gene_id 21 ; sequence AmOr50 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238805 198 + . alignment_id 21 ; Query AmOr50 ; Align 238626 338 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 12 -> 116 Target range: 299674 -> 299989 13 : AspAsnLeuSerGluTyrSerIleLysLeuSerArgTrpTyrLeuLysProLeuGlyA : 32 .!.||| !! !.!.|||!!!:!::!!:!!!!!!:!|||! |||||||||:!!|||! GlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyV 299675 : CAAAATGACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAG : 299732 33 : laTrpPro<->AlaSerSerSerThrThrLysMetGluArgIleIleSerGlnIleLe : 50 .!|||! ! !..!..! !!:!!!:!|||:!!|||!.!:!!:!!||| :!!|| alTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuValSerIleValLe 299733 : TATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCT : 299789 51 : uIleValIleCysTrpCysIleIleLeuPheThrValIleProGlyIleLeuTyrIle : 69 |!!:..!||||||!::! !! !:!:!!!|||! !|||:!:|||..! !! !|||||| uMetThrIleCysPheSerSerLeuPhePheIleValLeuProSerGlyHisTyrIle 299790 : CATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATC : 299846 70 : LeuPheValLysGlnAspIleTyrValLysLeuLysIlePheGlyProLeuSerHisT : 89 !!!|||!.!:!!:!!..!|||:!!||||||:!!|||:!!|||||||||:!!.!! !! PhePheAlaGluLysSerIleHisValLysValLysValPheGlyProValGlyPheC 299847 : TTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTT : 299906 90 : rpCysIleAspGlyPheAsnTyrAlaIleLeuLeuLeuArgLysAsnAspIleLeuHi : 108 ! ! !..! ! !!!!.|||..! !|||! !|||!.! ..!! .!! !!. ysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluAr 299907 : GCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACG : 299963 109 : sCysIleGluHisLeuArgAlaAsp : 116 .||||||:!!|||:!!..! !||| gCysIleGlnHisValGluArgAsp 299964 : ATGCATCCAACACGTCGAGAGAGAC : 299989 vulgar: AmOr50 12 116 . KQ414889.1 299674 299989 + 175 M 22 66 G 0 3 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299675 299989 175 + . gene_id 22 ; sequence AmOr50 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299675 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299675 299989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299675 299989 175 + . alignment_id 22 ; Query AmOr50 ; Align 299675 13 66 ; Align 299744 35 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 338 -> 406 Target range: 280276 -> 280551 339 : CysLysLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspLysA : 358 ||| !|||||||||! ..!||||||! !:!!||||||!::||||||! ||| CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysL 280277 : TGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGA : 280334 359 : spIleLeuAsnLeuIleMetIleIleSerArgSerSerValGluValLysIleThrAl : 377 ! !! !..!||||||:!!|||.!!:!! !|||!:! !...:!!|||:!!||||| ysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 280335 : AAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 280391 378 : aGlyLysIleIleThrMetSerIleTyrThrPheGlyAsn >>>> Target Intr : 391 ||||||||||||| !:!:|||:!! !!:!||| !!!:! 71 bp aGlyLysIleIleAspLeuSerLeuSerSerPheCysSer++ 280392 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt................ : 280435 392 : on 1 >>>> IleValLysThrValPheAlaTyrLeuAsnMetLeuArgGlnIleTh : 406 :!::!!||||||!.!||||||||||||!:!:!:|||||| !:!!|| ++ValLeuLysThrAlaPheAlaTyrLeuSerLeuLeuArgThrLeuTh 280436 : .........agGTGTTAAAAACGGCATTCGCATATCTGAGCTTATTACGTACGCTTAC : 280549 407 : r : 406 | r 280550 : C : 280551 vulgar: AmOr50 338 406 . KQ414889.1 280276 280551 + 167 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280277 280551 167 + . gene_id 23 ; sequence AmOr50 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280551 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280277 280551 167 + . alignment_id 23 ; Query AmOr50 ; Align 280277 339 156 ; Align 280504 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 337 -> 406 Target range: 261922 -> 262201 338 : GlnCysLysLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspL : 357 ||||||..!||||||||||||:!:||||||||||||||||||||| ! |||||||||| GlnCysSerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuProAspL 261923 : CAGTGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACCTGATA : 261980 358 : ysAspIleLeuAsnLeuIleMetIleIleSerArg-SerSerValGluValLysIleT : 376 ||..!||||||:!!||||||:!!||||||:!!|||#!:! !! !|||:!!!.. !! ysSerIleLeuAspLeuIleLeuIleIleAlaArg#AsnArgArgGluIleSerSerA 261981 : AAAGTATCCTTGATTTGATTTTGATCATTGCACGAAAACCGCCGGGAAATTAGTTCAA : 262038 377 : hrAlaGlyLysIleIleThrMet{S} >>>> Target Intron 1 >>>> {er : 384 .!!.!||| ! !:!! ! {|} 71 bp {|| snValGlyLeuHisValArgArg{S}++ +-{er 262039 : ATGTCGGTTTACACGTTCGGCGA{T}gt.........................ac{CA : 262134 385 : }IleTyrThrPheGlyAsnIleValLysThrValPheAlaTyrLeuAsnMetLeuArg : 403 }! ! !.!. !.!.:!:|||||||||!.!|||||||||||||||:!!|||||| }SerProLeuIlePheGlnValValLysThrAlaPheAlaTyrLeuAsnLeuLeuArg 262135 : }AGTCCGTTGATATTCCAGGTGGTTAAAACTGCTTTCGCGTATCTGAATCTGTTGCGT : 262190 404 : GlnIleThr : 406 |||!!:||| GlnMetThr 262191 : CAAATGACG : 262201 vulgar: AmOr50 337 406 . KQ414889.1 261922 262201 + 155 M 31 93 F 0 1 M 15 45 S 0 1 5 0 2 I 0 67 3 0 2 S 1 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261923 262201 155 + . gene_id 24 ; sequence AmOr50 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 261923 262062 . + . KQ414889.1 exonerate:protein2genome:local exon 261923 262062 . + . insertions 0 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local splice5 262063 262064 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 262063 262133 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 262132 262133 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 262134 262201 . + . KQ414889.1 exonerate:protein2genome:local exon 262134 262201 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 261923 262201 155 + . alignment_id 24 ; Query AmOr50 ; Align 261923 338 93 ; Align 262017 369 45 ; Align 262136 385 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 337 -> 406 Target range: 211770 -> 212081 338 : GlnCysLysLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspL : 357 ||| !|||||||||!!:! ! !||||||! !:!!||||||!:!:!!|||! | GlnThrValLysValGlyGluLysSerTyrMetIleAspTrpTyrArgMetProGlyL 211771 : CAGACAGTAAAAGTTGGAGAAAAGTCTTACATGATCGACTGGTATCGAATGCCAGGAA : 211828 358 : ysAspIleLeuAsnLeuIleMetIleIleSerArgSerSerValGluValLysIleTh : 376 || ! !||| !:!! !:!!!!:||||||! !||| ! ! ..!|||||||| ysLysGlyLeuValValProLeuMetIleSerMetSerHisSerThrThrLysIleTh 211829 : AGAAAGGTTTGGTCGTACCCTTGATGATCTCCATGTCACATTCGACCACCAAAATCAC : 211885 377 : rAlaGlyLysIleIleThrMetSerIleTyrThrPheGlyAsn >>>> Target I : 391 |||||||!!.:!!|||..!:!:|||||| !!:!||||||:!! 104 rAlaGlyAsnLeuIleValLeuSerIleSerSerPheGlyAsp++ 211886 : CGCTGGCAATCTCATCGTTCTTTCAATCAGTAGTTTCGGTGACgt............. : 211932 392 : ntron 1 >>>> IleValLysThrValPheAlaTyrLeuAsnMetLeuArgGlnIl : 405 bp :!!:!!|||||| ! ! .!!|||||||||||||||||| !.! ++ValIleLysThrSerValThrTyrLeuAsnMetLeuArgThrPh 211933 : ............agGTTATCAAGACTTCGGTAACATACTTGAACATGCTACGAACATT : 212076 406 : eThr : 406 !||| eThr 212077 : CACA : 212081 vulgar: AmOr50 337 406 . KQ414889.1 211770 212081 + 148 M 53 159 5 0 2 I 0 100 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 211771 212081 148 + . gene_id 25 ; sequence AmOr50 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 211771 211929 . + . KQ414889.1 exonerate:protein2genome:local exon 211771 211929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 211930 211931 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 211930 212033 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 212032 212033 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 212034 212081 . + . KQ414889.1 exonerate:protein2genome:local exon 212034 212081 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 211771 212081 148 + . alignment_id 25 ; Query AmOr50 ; Align 211771 338 159 ; Align 212034 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 333 -> 391 Target range: 214848 -> 215022 334 : IleLeuArgGluGlnCysLysLysValGlyAspMetValTyrMetThrAsnTrpTyrG : 353 |||:!! !:!!||||||||||||||||||!!::!: !||||||! !.!.||||||! IleMetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrA 214849 : ATTATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACC : 214906 354 : lnLeuProAspLysAspIleLeuAsnLeuIleMetIleIleSerArgSerSerValGl : 372 :!||||||! !!!. ! ! ||| !! !|||:!!|||!!::!!! !|||!:! !.. rgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSe 214907 : GATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATC : 214963 373 : uValLysIleThrAlaGlyLysIleIleThrMetSerIleTyrThrPheGlyAsnIle : 391 .||||||.!!|||||||||!!.!!::!! !:!!|||||| !||||||.!!!:!:!! rValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214964 : CGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215020 vulgar: AmOr50 333 391 . KQ414889.1 214848 215022 + 141 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214849 215022 141 + . gene_id 26 ; sequence AmOr50 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214849 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214849 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214849 215022 141 + . alignment_id 26 ; Query AmOr50 ; Align 214849 334 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 313 -> 406 Target range: 301802 -> 302163 314 : TyrValMetValAlaLeuSerMetSerPheAsnIleLeuLeuValCysCysIleGlyG : 333 |||:!!..! ! ... ... ||||||:!!!!!! ! !! !! ! !.!! TyrLeuGln***LysPheProPheLeuPheAsnValPheProArgTyrLeuSerSerP 301803 : TACTTACAGTAGAagtttccatttcttttcaatGTATTTCCACGGTATTTAAGCAGCT : 301860 334 : luIleLeuArgGluGlnCysLysLysValGlyAspMetValTyrMetThrAsnTrpTy : 352 ||| !|||!!: !!|||!..:!!:!!|||... !||| !! !:!!||||| heIleGlyArgAsp***CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTy 301861 : TTATTGGTCGTGATTAGTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTA : 301917 353 : rGlnLeuProAspLysAspIleLeuAsnLeuIleMetIleIleSerArgSerSerVal : 371 |.!.||||||! ||| !! !:!!||||||:!::!!! ! !! !|||..! ! rAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyr 301918 : CAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTAT : 301974 372 : GluValLysIleThrAlaGlyLysIleIleThrMetSerIleTyrThrPheGlyAsn : 391 ! !|||:!!|||||||||||||||||| !:!:|||:!: !!||||||.!!::! ProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSer+ 301975 : CCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTg : 302034 392 : >>>> Target Intron 1 >>>> IleValLysThrValPheAlaTyrLeuAsn : 400 82 bp :!:||||||||| ! ! !.!||||||||| + ++ValValLysThrSerValValTyrLeuAsn 302035 : t.........................agGTGGTGAAAACATCGGTGGTGTACTTGAAT : 302143 401 : MetLeuArgGlnIleThr : 406 :!:|||||| !:!!||| LeuLeuArgThrValThr 302144 : TTACTGCGAACAGTTACA : 302163 vulgar: AmOr50 313 406 . KQ414889.1 301802 302163 + 134 M 77 231 5 0 2 I 0 78 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301803 302163 134 + . gene_id 27 ; sequence AmOr50 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301803 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301803 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302163 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302163 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301803 302163 134 + . alignment_id 27 ; Query AmOr50 ; Align 301803 314 231 ; Align 302116 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 339 -> 391 Target range: 305627 -> 305783 340 : LysLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspLysAspI : 359 !..!..|||||| !!:!|||! !!:!||||||!!.|||||| !||| | SerSerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrI 305628 : AGTAGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGA : 305685 360 : leLeuAsnLeuIleMetIleIleSerArgSerSerValGluValLysIleThrAlaGl : 378 ||! !..!||||||:!:||||||:!!! !|||||| ! !!.!||||||!:!||||| leHisGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGl 305686 : TACATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGG : 305742 379 : yLysIleIleThrMetSerIleTyrThrPheGlyAsnIle : 391 ||||:!!:!! !:!:|||:!!! !||||||||||||:!: yLysValValAspLeuSerLeuSerThrPheGlyAsnVal 305743 : TAAAGTAGTTGATTTATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: AmOr50 339 391 . KQ414889.1 305627 305783 + 129 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305628 305783 129 + . gene_id 28 ; sequence AmOr50 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305628 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305628 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305628 305783 129 + . alignment_id 28 ; Query AmOr50 ; Align 305628 340 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 337 -> 395 Target range: 224496 -> 224670 338 : GlnCysLysLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspL : 357 ||||||:::|||:::|||...:!! !||||||! !:!!||||||!:!||| !!! ! GlnCysGluLysIleGlyGlnValSerTyrMetIleAspTrpTyrArgLeuThrGlyA 224497 : cagtgtgaaaaaattggacaAGTGTCGTACATGATCGACTGGTATCGGTTGACTGGAA : 224554 358 : ysAspIleLeuAsnLeuIleMetIleIleSerArgSerSerValGluValLysIleTh : 376 !. ! ! !||| !! !|||:!!||||||:!!! !|||!:! !..!:!!|||:!:|| snLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuTh 224555 : ATAAGAAACTATGCTGCATTCTGATAATCGCGATGTCCAATTCTTCGATAAAATTGAC : 224611 377 : rAlaGlyLysIleIleThrMetSerIleTyrThrPheGlyAsnIleValLysThrVal : 395 |||||||!!.!!::!! !:!!!!!:!! !|||||||||:!!:!! !! |||:!! rAlaGlyAsnMetValGluLeuCysLeuThrThrPheGlyAspValSerIleThrIle 224612 : AGCGGGAAACATGGTCGAACTGTGTCTAACCACTTTCGGTGACGTAAGTATCACAATC : 224668 vulgar: AmOr50 337 395 . KQ414889.1 224496 224670 + 127 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224497 224670 127 + . gene_id 29 ; sequence AmOr50 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224497 224670 . + . KQ414889.1 exonerate:protein2genome:local exon 224497 224670 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224497 224670 127 + . alignment_id 29 ; Query AmOr50 ; Align 224497 338 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 338 -> 401 Target range: 287063 -> 287252 339 : CysLysLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspLysA : 358 ||| !||||||||| ..!||||||! !:!!||||||!::||||||! ||| CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysT 287064 : tGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAA : 287121 359 : spIleLeuAsnLeuIleMetIleIleSerArgSerSerValGluValLysIleThrAl : 377 !! !..!||||||:!!|||.!!:!! !|||!:! !...:!!|||:!!||||| hrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 287122 : CAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 287178 378 : aGlyLysIleIleThrMetSerIleTyrThrPheGlyAsnIleValLysThrValPhe : 396 ||||||||||||| !:!:|||:!! !!:!||| !!!:!:!: !! ! ! !!!. aGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeu 287179 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTA : 287235 397 : AlaTyrLeuAsnMet : 401 :!!|||! !:!!:!! SerTyrTyrHisLeu 287236 : TCCTATTATCATTTG : 287252 vulgar: AmOr50 338 401 . KQ414889.1 287063 287252 + 126 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287064 287252 126 + . gene_id 30 ; sequence AmOr50 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287064 287252 126 + . alignment_id 30 ; Query AmOr50 ; Align 287064 339 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 337 -> 400 Target range: 230244 -> 230433 338 : GlnCysLysLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspL : 357 ||||||!:!|||||||||!!:! ! !||||||! !.!.||||||!:!||| !!! ! GlnCysArgLysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyA 230245 : CAGTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAA : 230302 358 : ysAspIleLeuAsnLeuIleMetIleIleSerArgSerSerValGluValLysIleTh : 376 !. ! ! ||| !! !|||:!!||||||:!!! !|||!:! !..!..!|||.!!|| snLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheTh 230303 : ACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTAC : 230359 377 : rAlaGlyLysIleIleThrMetSerIleTyrThrPheGlyAsnIleValLysThrVal : 395 |||||||!!.!!::!! !:!:|||:!! !!||||||.!!:!!:!! !! ! ! !! rAlaGlyAsnMetValGluLeuSerValAsnThrPheSerAspValSerIleIlePhe 230360 : AGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGACGTAAGTATCATATTC : 230416 396 : PheAlaTyrLeuAsn : 400 ! !!.!||| !||| SerValTyrThrAsn 230417 : TCTGTTTACACGAAT : 230433 vulgar: AmOr50 337 400 . KQ414889.1 230244 230433 + 124 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230245 230433 124 + . gene_id 31 ; sequence AmOr50 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230245 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230245 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230245 230433 124 + . alignment_id 31 ; Query AmOr50 ; Align 230245 338 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 338 -> 396 Target range: 219512 -> 219686 339 : CysLysLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspLysA : 358 |||:::|||:::|||:::||| !||||||! !.!.||||||!:!||| !!! ||| CysArgLysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysL 219513 : TGtaggaaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGA : 219570 359 : spIleLeuAsnLeuIleMetIleIleSerArgSerSerValGluValLysIleThrAl : 377 ! ! ||| !:!!:!!! !|||:!!! !|||!:! !..!:!!|||:!:||||| ysLysLeuTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAl 219571 : AAAAGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGC : 219627 378 : aGlyLysIleIleThrMetSerIleTyrThrPheGlyAsnIleValLysThrValPhe : 396 ||||!!.!!::!! !:!!|||||| !|||||| !:!!:!: :::||| aGlyAsnMetValGluLeuSerIleSerThrPheThrAspValSerIleLysLeuPhe 219628 : CGGAAATATGGTCGAATTGTCTATCAGCACTTTTACCGACGTGAGtatcaaattattc : 219684 vulgar: AmOr50 338 396 . KQ414889.1 219512 219686 + 122 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219513 219686 122 + . gene_id 32 ; sequence AmOr50 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219513 219686 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219686 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219513 219686 122 + . alignment_id 32 ; Query AmOr50 ; Align 219513 339 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 341 -> 391 Target range: 206251 -> 206401 342 : ValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspLysAspIleLeuA : 361 |||||| ! !! !! !..!|||||||||!::||||||:!!!:! !! ! !: ValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgS 206252 : GTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCT : 206309 362 : snLeuIleMetIleIleSerArgSerSerValGluValLysIleThrAlaGlyLysIl : 380 :!:!!|||:!!||||||:!!! !|||!:! ! !:!!|||:!!||||||||||||!! erMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMe 206310 : CTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAAT : 206366 381 : eIleThrMetSerIleTyrThrPheGlyAsnIle : 391 :.!! !||||||:!! !!:!||| !:!!:!! tPheGluMetSerLeuAlaSerPheThrAspVal 206367 : GTTCGAAATGTCTTTAGCTAGTTTCACCGATGTA : 206401 vulgar: AmOr50 341 391 . KQ414889.1 206251 206401 + 103 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206252 206401 103 + . gene_id 33 ; sequence AmOr50 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206252 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206252 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206252 206401 103 + . alignment_id 33 ; Query AmOr50 ; Align 206252 342 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 337 -> 391 Target range: 292389 -> 292551 338 : GlnCysLysLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspL : 357 ||| !!!..:!!:!!!.! !! !||| |||.!.||||||.!.|||||| : GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 358 : ysAspIleLeuAsnLeuIleMetIleIleSerArgSerSerValGluValLysIleTh : 376 :! ! !! !:!!:!!:!!:!!:!::!!:!!! !!!!!.! ! !:!!|||:!!|| rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 377 : rAlaGlyLysIleIleThrMetSerIleTyrThrPheGlyAsnIle : 391 |||||||||||||.!!..!:!:|||:!: !!||||||||| !:!! rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaVal 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTA : 292551 vulgar: AmOr50 337 391 . KQ414889.1 292389 292551 + 102 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 292551 102 + . gene_id 34 ; sequence AmOr50 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292390 292551 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 292551 102 + . alignment_id 34 ; Query AmOr50 ; Align 292390 338 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1404 Query range: 10 -> 408 Target range: 289702 -> 293251 11 : ProLeuAsnAspArgTyrGluSerAspIleGlnTyrThrPheGlnPheCysHisTrpI : 30 |||! !|||||||||||||||!!!||||||!::|||||||||:!!!!.|||||||||| ProSerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpI 289703 : CCGTCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGA : 289760 31 : leLeuLysProLeuGlyIleTyrTyrPheIleTyrAsnGlnAlaAsnLysPheGluLy : 49 |||||||||||:!!|||!!:||| !|||:!!!:!!:!!::|||!:!!:! !|||:: leLeuLysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluAr 289761 : TCTTGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACG : 289817 50 : sIleLeuSerIleIleLeuIleLeuIleCysPhePheIleIleGlnPheValIleVal : 68 !! !|||:!::!:|||||||||:!!|||! !! |||:!!||||||:!!|||||| gThrAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleVal 289818 : AACGGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTA : 289874 69 : ProPheGlyTyrTyrIleLeuPheTyrGluLysAspMetAsnThrLysIleLysPheL : 88 ||||||.!!:!!:!!:!!|||||| !!!:!!.|||||||||||| :!!||| !| ProPheSerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnL 289875 : CCGTTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATC : 289934 89 : euGlyProLeuThrPheCysLeuSerAlaLeuPheLysTyrSerTyrLeuGlyIleLy : 107 |||||||||||||||||||||||!!!.!!!!!|||||||||!!!|||!!!.!!!!:|| euGlyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLy 289935 : TCGGACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAA : 289991 108 : sSerSerGluLeuGlyHisCysIleLysHisValGluLysAspTrpLysMetLeuGln : 126 |.!!|||! !:!!|||!.!|||:!:||||||:!!|||!:!|||||||||||||||!:: sGlySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArg 289992 : AGGTTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGT : 290048 127 : AsnGluAspHisArgValIleMetSerArgTyrValIleMetGlyArgAsnLeuIleT : 146 :!!||||||||||||||||||||| !|||||||||! |||.!!||||||||||||! AspGluAspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleL 290049 : GACGAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAA : 290108 147 : hrLeuCysAlaAlaPheMetTyrThrGlyGlyLeuSerTyrHisThrIleMetProLe : 165 !||||||||| !|||:!!|||! !|||||||||||||||:!!|||:!!!!:||||| ysLeuCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLe 290109 : AACTGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTT : 290165 166 : uLeuSerLysArgLysValGlu<->AsnPheThrIleArgProLeuThrTyrProGly : 183 |!!!||||||!:!!..|||.!. ||| ! ||||||||||||||||||||||||||| uPheSerLysLysSerValAsnGlyAsnValThrIleArgProLeuThrTyrProGly 290166 : GTTCTCGAAGAAGAGCGTGAACGGTAACGTGACTATCAGACCTCTAACTTATCCCGGT : 290222 184 : TyrGluAlaPheLeuAsnIleGlnLysSerProThrTyrGluIleIleTyrCysMetH : 203 ||||||! !|||!!!:!!:!!||||||||||||.!!|||||||||:!!!:!||||||| TyrGluGluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetH 290223 : TACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGC : 290282 204 : isCysIleTyrValIleValValGlyAsnIleThrMetAlaAlaTyrSerLeuThrTh : 222 |||||:!!||||||!!::!!..!!.!|||||||||||||||||||||||||||||||| isCysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrTh 290283 : ACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGAC : 290339 223 : rIlePheIleThrHisAlaCysGlyGlnIleLysIleGlnMetLeuArgLeuGluAsn : 241 ||||||| !||||||.!!|||||||||||||||||||||! ! !|||||||||:!! rIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAsp 290340 : GATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGAT : 290396 242 : LeuLysAsnGluLysLysValLeuGluThrGlyIleGluSerHisLeuAlaValValV : 261 |||! !!!...! !! !:!!||||||! !|||:!:.....!!.!||||||||||||| LeuThrLysArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValValV 290397 : CTGACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTG : 290456 262 : alLysAsnHisValGluIleLeu{Ar} >>>> Target Intron 1 >>>> {g : 269 ||!....!|||||||||||||||{!:} 655 bp {! alSerGlyHisValGluIleLeu{Ly}++ ++{s 290457 : TGAGCGGTCACGTGGAGATCTTG{AA}gt.........................ag{A : 291137 270 : }PheAlaLysAsnValGluThrThrLeuArgGluLeuPheLeuValGluValIleVal : 288 }|||.!!!:!! :!!|||!:!.!!|||!.!|||:!!||||||:!!|||||||||||| }PheThrArgMetIleGluSerAlaLeuHisGluIlePheLeuIleGluValIleVal 291138 : }TTCACGAGGATGATCGAAAGCGCGTTGCATGAAATATTCTTGATAGAAGTAATAGTA : 291192 289 : SerThrLeuLeuMetCysLeuLeuGluTyrTyrCysMetVal >>>> Target In : 303 ||||||:!!|||:!:||||||:!!|||||| !! |||:!! 132 SerThrValLeuLeuCysLeuIleGluTyrLeuLeuMetMet++ 291193 : TCCACTGTGTTACTATGCTTGATCGAATATCTCTTAATGATGgt.............. : 291239 304 : tron 2 >>>> GluTrpGluThrSerAspSerAlaAlaIleLeuThrTyrValIle : 317 bp |||||||||!:!||||||||| !!.!|||||||||||||||! ! ++GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThr 291240 : ...........agGAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACT : 291411 318 : LeuLeuPheSerPheThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuL : 337 |||||| !||||||||||||||||||||||||||||||||||||||||||||||||| LeuLeuThrSerPheThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuL 291412 : CTCCTCACTTCTTTCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTC : 291471 338 : euGlyGln >>>> Target Intron 3 >>>> GlySerGluIleAlaThrAla : 346 |||||||| 913 bp ||||||||||||||| !||| euGlyGln++ ++GlySerGluIleAlaHisAla 291472 : TTGGACAGgt.........................agGGTAGTGAAATCGCGCACGCT : 292411 347 : LeuTyrGluIleGluTrpTyrAsnLeuProGlyArgLysAlaArgAspIleIleLeuL : 366 ! !|||!!:! !|||||||||||||||||| !!||||||||||||||||||:!!|||: SerTyrAspThrGluTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuV 292412 : TCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGG : 292471 367 : euLeuValIleSerLysTyrProProLysLeuThrAlaGlyLysIlePheIleLeuSe : 385 !!|||!.!|||!!!|||:!!||| !||||||||||||||||||||||||:!!||||| alLeuAlaIleThrLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSe 292472 : TGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTC : 292528 386 : rMetAsnThrPheSerVal >>>> Target Intron 4 >>>> ValLeuLysS : 395 |:!!|||||||||.!!!.! 652 bp |||||||||| rLeuAsnThrPheGlyAla++ ++ValLeuLysS 292529 : GTTGAACACTTTTGGCGCTgt.........................agGTGCTGAAAT : 293210 396 : erSerValValTyrLeuAsnMetLeuArgThrIleThrGlu : 408 ||||||||||||||:!!|||||||||||||||:!!|||||| erSerValValTyrMetAsnMetLeuArgThrValThrGlu 293211 : CGTCGGTAGTTTACATGAACATGCTACGAACCGTCACTGAA : 293251 vulgar: AmOr51 10 408 . KQ414889.1 289702 293251 + 1404 M 162 486 G 0 3 M 96 288 S 0 2 5 0 2 I 0 651 3 0 2 S 1 1 M 33 99 5 0 2 I 0 128 3 0 2 M 37 111 5 0 2 I 0 909 3 0 2 M 52 156 5 0 2 I 0 648 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289703 293251 1404 + . gene_id 1 ; sequence AmOr51 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 289703 290481 . + . KQ414889.1 exonerate:protein2genome:local exon 289703 290481 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 290482 290483 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 290482 291136 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 291135 291136 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 291137 291236 . + . KQ414889.1 exonerate:protein2genome:local exon 291137 291236 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291237 291238 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291237 291368 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 291367 291368 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292548 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292548 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 292549 292550 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 292549 293200 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 293199 293200 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 293201 293251 . + . KQ414889.1 exonerate:protein2genome:local exon 293201 293251 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289703 293251 1404 + . alignment_id 1 ; Query AmOr51 ; Align 289703 11 486 ; Align 290192 173 288 ; Align 291138 270 99 ; Align 291369 303 111 ; Align 292393 340 156 ; Align 293201 392 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 933 Query range: 1 -> 407 Target range: 299629 -> 302163 2 : ArgSerThrAsnAsnIleAspAsnLeuProLeuAsnAspArgTyrGluSerAspIleG : 21 |||||| !!:!!:!:!!|||..!! ! ! !||| !!!.!|||:!!!:!||||||! ArgSerCysSerSerValAspGlyGlnLeuArgAsnTyrHisTyrGlnAsnAspIleH 299630 : CGATCCTGTAGCAGTGTTGACGGCCAATTGAGGAATTACCATTACCAAAATGACATAC : 299687 22 : lnTyrThrPheGlnPheCysHisTrpIleLeuLysProLeuGlyIleTyrTyrPheIl : 40 !.||||||.!.|||.!.|||!!.|||:!:|||||||||:!!|||:!!!:: !!.:! isTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpArgLeuLe 299688 : ATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGCGATTGCT : 299744 41 : eTyrAsnGlnAlaAsnLysPheGluLysIleLeuSerIleIleLeuIleLeuIleCys : 59 ! !!.!.!:::!!!:!|||.!.||| ! :!!:!!||||||:!!|||!!: !|||||| uAspGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMetThrIleCys 299745 : AGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATGACAATATGC : 299801 60 : PhePheIleIleGlnPheValIleValProPheGlyTyrTyrIleLeuPheTyrGluL : 79 |||! !! !:!: |||:!!:!!:!!|||! !|||:!!||||||!!!||| |||| PheSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePhePheAlaGluL 299802 : TTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCTTCGCGGAGA : 299861 80 : ysAspMetAsnThrLysIleLysPheLeuGlyProLeuThrPheCysLeuSerAlaLe : 98 ||..!!!::!!..!|||:!:||| ! !!!||||||:!! !||||||||||||:!!:! ysSerIleHisValLysValLysValPheGlyProValGlyPheCysLeuSerSerIl 299862 : AAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCAT : 299918 99 : uPheLysTyrSerTyrLeuGlyIleLysSerSerGluLeuGlyHisCysIleLysHis : 117 ! !!||||||!!!|||||| !!:!:!!..!!.!!! !!!!! !!..||||||:!!||| eValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCysIleGlnHis 299919 : CGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGCATCCAACAC : 299975 118 : ValGluLysAsp--TrpLysMetLeuGlnAsnGluAspHisArgValIleMetSerAr : 136 ||||||!:!|||## :::.!. !!!.!! !:!! |||! !|| ValGluArgAsp##UnkUnkUnkUnkUnkSerAsnHisArgThrIle---MetLeuAr 299976 : GTCGAGAGAGACNNNNNNNNNNNNNNNNTTCGAATCATCGTACGATC---ATGTTGAG : 300031 137 : gTyrValIleMetGlyArgAsnLeuIleThrLeuCysAlaAlaPheMetTyrThrGly : 155 |||||||! !|||.!!|||||||||! |||:!!||||||!.!|||:!:|||.!!||| gTyrValThrMetSerArgAsnLeuThrThrValCysAlaValPheLeuTyrAlaGly 300032 : ATACGTGACTATGAGCAGAAATCTGACGACCGTGTGCGCCGTGTTTCTTTACGCAGGT : 300088 156 : GlyLeuSerTyrHisThrIleMetProLeuLeuSerLysArgLys{Va} >>>> Ta : 171 |||:!!||||||||||||:!:|||! !!!!||||||||| !!:!{ } GlyMetSerTyrHisThrValMetGlnPheLeuSerLysAspArg{Ar}-- 300089 : GGTATGTCGTATCACACGGTGATGCAGTTCTTATCGAAGGACAGA{AG}ca....... : 300140 172 : rget Intron 1 >>>> {l}GluAsnPheThrIleArgProLeuThrTyrProGl : 183 48 bp {!}||||||!:!||| !!:!||||||.!!|||||||| ++{g}GluAsnTyrThrTyrLysProLeuAlaTyrProGl 300141 : ..................ag{G}GAGAATTACACTTACAAACCGTTAGCCTATCCTGG : 300220 184 : yTyrGluAlaPheLeuAsnIleGlnLysSerProThrTyrGluIleIleTyrCysMet : 202 ||||!!: !|||:!!:!!! !|||! ||||||||||||||||||:::::: ... yTyrAspTrpPheIleAspThrGlnThrSerProThrTyrGluIleValPhePhePhe 300221 : CTACGATTGGTTTATCGATACACAAACCAGTCCTACCTACGAgatcgtatttttcttt : 300277 203 : HisCysIleTyrValIleValValGlyAsnIleThrMetAlaAlaTyrSerLeuThrT : 222 ||||||.!! !.!!!::!!:!! !|||:!:|||! !|||||||||||||||.!!. HisCysPheAlaAlaMetIleMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaA 300278 : cactgttTCGCAGCGATGATCATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGG : 300337 223 : hrIlePheIleThrHisAlaCysGlyGlnIleLysIleGlnMetLeuArgLeuGluAs : 241 !!||||||:!!|||||| !||||||||||||:!!||||||||| !|||||||||:! laIlePheValThrHisIleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAs 300338 : CGATATTCGTCACTCATATCTGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGA : 300394 242 : nLeuLysAsnGluLysLysValLeuGluThrGlyIleGluSerHisLeuAlaValVal : 260 !||| !.!...!! ! !! ! !!!: !||| !!!: !! |||!.!|||:!! pLeuValGluArgThrGlyGluLysAspAspGlyProAspPro---LeuValValIle 300395 : TCTGGTGGAGAGGACGGGAGAGAAGGACGACGGTCCTGATCCT---TTGGTCGTTATC : 300448 261 : ValLysAsnHisValGluIleLeuArgPheAlaLysAsnValGluThrThrLeuArgG : 280 |||::!:!!||||||:!!:!!||||||! ! !!:!..! ! !! !:!! !!. ValArgAspHisValLysValLeuArg***GluArgArg***PheGlyArgIle***A 300449 : GTTCGAGATCACGTGAAGGTTTTAAGGTAAGAGAGACGTTGATTCGGGAGAATTTGAC : 300508 281 : luLeuPheLeu{V} >>>> Target Intron 2 >>>> {al}GluValIleVa : 288 .! !! |||{|} 140 bp {||}|||:!!.!!! rgGly***Leu{V}-+ ++{al}GluIlePheGl 300509 : GAGGTTGATTG{G}tt.........................ag{TG}GAAATCTTCGA : 300672 289 : lSerThrLeuLeuMetCysLeuLeuGluTyrTyrCysMetVal >>>> Target I : 303 !|||||||||:!!:!!|||||||||||||||||||||:!!||| 970 uSerThrLeuIleLeuCysLeuLeuGluTyrTyrCysLeuVal++ 300673 : GTCCACGCTGATTTTGTGTTTGCTCGAATACTACTGTTTGGTGgt............. : 300719 304 : ntron 3 >>>> GluTrpGluThrSerAspSerAlaAlaIleLeuThrTyrValIl : 317 bp ||||||:!!!.!||||||!!! !|||!!:||||||!:! !!! ++GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheTh 300720 : ............agGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCAC : 301729 318 : eLeuLeuPheSerPheThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeu : 336 !|||||| ||||||||||||||||||!!!||||||||||||:!!||||||:!!||| rLeuLeuThrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeu 301730 : TCTGTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTT : 301786 337 : LeuGlyGln >>>> Target Intron 4 >>>> GlySerGluIleAlaThrAl : 346 ! !! !||| 80 bp !!|||:!!|||!.!:!!|| SerGluGln++ ++CysSerGlnIleGlySerAl 301787 : TCCGAACAGgt.........................agTGTAGCCAAATTGGTTCAGC : 301896 347 : aLeuTyrGluIleGluTrpTyrAsnLeuProGlyArgLysAlaArgAspIleIleLeu : 365 |! !|||||||||!!:|||||||||||||||!.!!:!!:!||| !|||:!!|||||| aSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeu 301897 : ATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTA : 301953 366 : LeuLeuValIleSerLysTyrProProLysLeuThrAlaGlyLysIlePheIleLeuS : 385 ||| !|||||||||:!!||||||||||||||||||||||||||||||.!! !|||| LeuSerValIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuS 301954 : CTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTAT : 302013 386 : erMetAsnThrPheSerVal >>>> Target Intron 5 >>>> ValLeuLys : 394 ||:!!|||||||||||| ! 82 bp |||:!!||| erLeuAsnThrPheSerSer++ ++ValValLys 302014 : CCTTGAATACATTCAGCTCTgt.........................agGTGGTGAAA : 302122 395 : SerSerValValTyrLeuAsnMetLeuArgThrIleThr : 407 !!!||||||||||||||||||:!:|||||||||:!!||| ThrSerValValTyrLeuAsnLeuLeuArgThrValThr 302123 : ACATCGGTGGTGTACTTGAATTTACTGCGAACAGTTACA : 302163 vulgar: AmOr51 1 407 . KQ414889.1 299629 302163 + 933 M 120 360 F 0 2 M 11 33 G 1 0 M 37 111 S 0 2 5 0 2 I 0 44 3 0 2 S 1 1 M 84 252 G 1 0 M 27 81 S 0 1 5 0 2 I 0 136 3 0 2 S 1 2 M 18 54 5 0 2 I 0 966 3 0 2 M 37 111 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299630 302163 933 + . gene_id 2 ; sequence AmOr51 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 299630 300137 . + . KQ414889.1 exonerate:protein2genome:local exon 299630 300137 . + . insertions 0 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local splice5 300138 300139 . + . intron_id 1 ; splice_site "CA" KQ414889.1 exonerate:protein2genome:local intron 300138 300185 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300184 300185 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300186 300520 . + . KQ414889.1 exonerate:protein2genome:local exon 300186 300520 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 300521 300522 . + . intron_id 2 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 300521 300660 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 300659 300660 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300661 300716 . + . KQ414889.1 exonerate:protein2genome:local exon 300661 300716 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300717 300718 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300717 301686 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 301685 301686 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 5 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 5 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 4 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302163 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302163 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299630 302163 933 + . alignment_id 2 ; Query AmOr51 ; Align 299630 2 360 ; Align 299992 122 33 ; Align 300025 134 111 ; Align 300187 172 252 ; Align 300439 257 81 ; Align 300663 285 54 ; Align 301687 303 111 ; Align 301878 340 156 ; Align 302116 392 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 466 Query range: 18 -> 406 Target range: 232450 -> 235260 19 : AspIleGlnTyrThrPheGlnPheCysHisTrpIleLeuLysProLeuGlyIleTyrT : 38 ||| !:!!|||!:!.!!||| ! !!.!|||.!!|||! !|||:!!||| !!:: AspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpP 232451 : GACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGC : 232508 39 : yrPheIleTyrAsnGlnAlaAsnLysPheGluLysIleLeuSerIleIleLeuIleLe : 57 !:!! !..:!!.!!:::!:! !:!!:!!:!!|||:!!! !:!:|||! !|| roArgVal---ThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLe 232509 : CGCGTGTT---ACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACT : 232562 58 : uIleCysPhePheIleIleGlnPheValIleValProPheGlyTyrTyrIleLeuPhe : 76 |! !||| !! !:!:!!: ! ! !|||||||||! ! ! !:!||||||||| uThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPhe 232563 : CACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTC : 232619 77 : TyrGluLysAspMetAsnThrLysIleLysPheLeuGlyProLeuThrPheCysLeuS : 96 ! !!:! !..!:!:.!. !!:!!!:|||! !:!!||||||:!!!:! !! !|||! GluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuM 232620 : GAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGA : 232679 97 : erAlaLeuPheLysTyrSerTyrLeuGlyIleLysSerSerGluLeuGlyHisCysIl : 115 !!.! !!!.!!.|||!!!! !||| ! !|||:!!!:!!!::!! !:!!|||:! etGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysVa 232680 : TGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGT : 232736 116 : eLysHisValGluLysAspTrpLysMetLeuGlnAsnGluAspHisArgValIleMet : 134 ::!!!!.|||:!!:!!||||||::!! :!!:!!!!. ! !||||||! !:!:||| lGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMet 232737 : GGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATG : 232793 135 : SerArgTyrValIleMetGlyArgAsnLeuIleThrLeuCysAlaAlaPheMetTyrT : 154 ! !!:! !!!.!! !:!:||||||::::!! ! !:!!..!||| !! !|||:!!| LeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisT 232794 : TTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACA : 232853 155 : hrGlyGlyLeuSerTyrHisThrIleMetProLeu<->LeuSerLysArgLysVal<- : 172 |||||! ! !||| !!.!.! !:!!! !||| :!!|||! ! ! ! ||| hrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGl 232854 : CCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGG : 232910 173 : ><->GluAsnPheThrIleArgProLeuThrTyrProGlyTyrGluAlaPheLeuAsn : 189 |||!:!!:!:!!!!: !|||||| !!! ! !! !||| ! !.!.:!!:!! yAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAsp 232911 : GAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGAC : 232967 190 : IleGlnLysSerProThrTyrGluIleIleTyrCysMetHisCysIleTyrValIleV : 209 ! !::! ||||||||| !!||||||!!:!:! !:!:!!.|||:!!! !! !.!!: ThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheI 232968 : ACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCA : 233027 210 : alValGlyAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePheIleThrHisAl : 228 !!|||..!::!:!!|||:!!!.!|||! !.!!||| !.!!:!!.!. ! !||||| leValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAl 233028 : TCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGC : 233084 229 : aCysGlyGlnIleLysIleGlnMetLeuArgLeuGluAsnLeuLysAsnGluLysLys : 247 ||||||||||:!:!!.:!: !|||! !!:!|||!!::!!||| !:!!! !||| ! aCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGly 233085 : GTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGG : 233141 248 : ValLeuGluThrGlyIleGluSerHisLeuAlaValValValLysAsnHisValGluI : 267 ! !|||! !! ! :!!!!! ! |||!.! !!:!!|||:!!:!!|||:!!...! GlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgT 233142 : CAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTA : 233201 268 : leLeuArgPheAlaLys >>>> Target Intron 1 >>>> AsnValGluThr : 276 !||||||!:! !... 1315 bp |||:!!|||!.! hrLeuArgTyrLeuSer++ -+AsnIleGluAsn 233202 : CATTAAGGTATTTGTCTgt.........................ggAATATAGAGAAC : 234543 277 : ThrLeuArgGluLeuPheLeuValGluValIleValSerThrLeuLeuMetCysLeuL : 296 ..!:!!!.! !:!!! !|||||||||:!!:!!! !!!!|||||| !||||||:!!| ValMetAsnLeuIleCysLeuValGluLeuValGlyCysThrLeuAsnMetCysMetL 234544 : GTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACGTTGAACATGTGCATGC : 234603 297 : euGluTyr{Ty} >>>> Target Intron 2 >>>> {r}CysMetValGluTr : 304 ||||||||{!!} 180 bp { }|||!!::!! ! euGluTyr{**}-+ +-{*}CysIleLeuThrSe 234604 : TCGAGTAT{TA}tt.........................aa{A}TGTATTTTAACTTC : 234807 305 : pGluThrSerAspSerAlaAlaIleLeuThrTyrValIleLeuLeuPheSerPheThr : 323 :!! !!........ ::: !:!!|||||||||:!!! ! ! |||.!.||| rGlnGluLysSerLysGluLysLeuAlaSerTyrValIleValTyrValSerMetThr 234808 : TCAGGAAAAgtcgaaggaaaaattagCTTCATACGTCATCGTGTACGTGTCCATGACA : 234864 324 : PheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln >>>> Tar : 340 |||||||||...||||||||||||:!!|||||| !||| !! !||| PheAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGln++ 234865 : TTtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGCAGgt........ : 234917 341 : get Intron 3 >>>> GlySerGluIleAlaThrAlaLeuTyrGluIleGluTrp : 352 74 bp !!!!!:!!:!!!.! ! !:!!||| !! !|||||| ++CysThrLysValGlyGluLysValTyrMetThrGluTrp 234918 : .................agTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGG : 235025 353 : TyrAsnLeuProGlyArgLysAlaArgAspIleIleLeuLeuLeuValIleSerLysT : 372 |||...|||||| !!:!! |||! !! !:!::!!:!!:!!:!! !! |||!.. TyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerM 235026 : TACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCA : 235085 373 : yrProProLysLeuThrAlaGlyLysIlePheIleLeuSerMetAsnThrPheSerVa : 391 ! !|||:!!||||||||||||.!!.!. !:!!|||:!: ||||||.!!! etValIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAs 235086 : TGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGA : 235142 392 : l >>>> Target Intron 4 >>>> ValLeuLysSerSerValValTyrLeuA : 401 ! 71 bp |||!!!|||:!!||| !!!.!|||!!!| p++ ++ValPheLysAlaSerPheAlaTyrPheA 235143 : Tgt.........................agGTATTTAAGGCGTCTTTCGCCTACTTCA : 235243 402 : snMetLeuArgThrIle : 406 |||||:!!||||||:!! snMetIleArgThrVal 235244 : ACATGATCCGCACAGTT : 235260 vulgar: AmOr51 18 406 . KQ414889.1 232450 235260 + 466 M 22 66 G 1 0 M 124 372 G 0 3 M 6 18 G 0 6 M 101 303 5 0 2 I 0 1311 3 0 2 M 26 78 S 0 2 5 0 2 I 0 176 3 0 2 S 1 1 M 40 120 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232451 235260 466 + . gene_id 3 ; sequence AmOr51 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232451 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232451 233218 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233219 233220 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233219 234533 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234532 234533 . + . intron_id 0 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 234534 234613 . + . KQ414889.1 exonerate:protein2genome:local exon 234534 234613 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234614 234615 . + . intron_id 2 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 234614 234793 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234792 234793 . + . intron_id 1 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 234794 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234794 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235144 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235144 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 235145 235146 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 235145 235215 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 235214 235215 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 235216 235260 . + . KQ414889.1 exonerate:protein2genome:local exon 235216 235260 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232451 235260 466 + . alignment_id 3 ; Query AmOr51 ; Align 232451 19 66 ; Align 232517 42 372 ; Align 232892 166 18 ; Align 232916 172 303 ; Align 234534 273 78 ; Align 234795 300 120 ; Align 234989 340 156 ; Align 235216 392 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 453 Query range: 2 -> 339 Target range: 217117 -> 219439 3 : SerThrAsnAsnIleAspAsnLeuProLeuAsnAspArgTyrGluSerAspIleGlnT : 22 :!!||||||!!. !.!.::!! ! ! !:!! !!...||||||...:::|||... AlaThrAsnLysGluGlnSerProArgThrAspTyrGluTyrGluLysAsnIleAsnL 217118 : GCAACAAACAAGGAACAATCCCCCAGAACCGACTACGAgtacgagaaaaatataaatc : 217175 23 : yrThrPheGlnPheCysHisTrpIleLeuLysProLeuGlyIleTyrTyrPheIleTy : 41 ::!.!!|||!:: !!.!|||:!:|||||||||:!!|||:!!!:: ! !! euSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpPro---AsnSe 217176 : tcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCA---AACTC : 217229 42 : rAsnGlnAlaAsnLysPheGluLysIleLeuSerIleIleLeuIleLeuIleCysPhe : 60 ..! .!!!.!!:!! !..!|||||||||! !! !:!::!!! ! !:!!|||!:! rArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTyr 217230 : ACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTAC : 217286 61 : PheIleIleGlnPheValIleValProPheGlyTyrTyrIleLeuPheTyrGluLysA : 80 !:!:|||...|||:!!.!!||||||! !..! |||:!:!!!.!! ! ! :!!| GlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeuGluValGluA 217287 : GGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAG : 217346 81 : spMetAsnThrLysIleLysPheLeuGlyProLeuThrPheCysLeuSerAlaLeuPh : 99 ||:!: !! !|||:!:|||.!.!!!|||||||||! !||||||:!!! !|||!!! ! spLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValMetAlaPheVa 217347 : ATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGT : 217403 100 : eLysTyrSerTyrLeuGlyIleLysSerSerGluLeuGlyHisCysIleLysHisVal : 118 !||||||! !! !||| !:!! ! !.!:!!!!::!! !!.!.|||:!:!:!...:!! lLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCysValArgArgIle 217404 : CAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATC : 217460 119 : GluLysAspTrpLysMetLeuGlnAsnGluAspHisArgValIleMetSerArgTyrV : 138 |||::!||||||!:!! :!!::! !||| ! !!|||! ! |||! ! ! !!! GluArgAspTrpArgAsnValArgCysGluLysAspArgGluAlaMetIleValAsnA 217461 : GAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACG : 217520 139 : alIleMetGlyArgAsnLeuIleThrLeuCysAlaAlaPheMetTyrThrGlyGlyLe : 157 .!! !.!.||||||!!.|||:!! !||||||.!! !|||||||||!:!||| :: laAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheVa 217521 : CGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcgt : 217577 158 : uSerTyrHisThrIleMetProLeuLeuSerLysArgLysValGlu<-><-><->Asn : 173 : |||::: ! !!!:|||:!! ! ! !|||! :!!..! ||| lPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGluAsnGlyAsn 217578 : tttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAAC : 217634 174 : PheThrIleArgProLeuThrTyrProGlyTyrGluAlaPheLeuAsnIleGlnLysS : 193 .!!|||.!!! !||||||..!!:!||| ! :!! !.!!:!!:!!! !!:: ! ! LeuThrPheIleProLeuValPheProPheThrLysTyrIleIleAspThrArgTyrT 217635 : CTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACA : 217694 194 : erProThrTyrGluIleIleTyrCysMetHisCysIleTyrValIleValValGlyAs : 212 !!|||||| !!||||||:!:!:!! !:!:!!.! ||| !! ! !:!!:!! !.. hrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGl 217695 : CTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGG : 217751 213 : nIleThrMetAlaAlaTyrSerLeuThrThrIlePheIleThrHisAlaCysGlyGln : 231 .|||||| !||||||! !||||||.!!.!! !||| ..!||||||||||||||| yIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGln 217752 : AATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAG : 217808 232 : IleLysIleGlnMetLeuArgLeuGluAsnLeuLysAsnGluLysLysValLeuGluT : 251 |||:!!:!: !||| ! !!|||:!!:!!|||! :!!! !:! !! !:!!... IleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgAlaAspMetSerA 217809 : ATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGAGCGGATATGAGCG : 217868 252 : hrGlyIleGluSerHisLeuAlaValValValLysAsnHisValGluIleLeuArgPh : 270 ! !:!:!!:.!!...:!!||| !:!!|||!...!.||||||..!||||||!:!! spThrValAspGlyArgIleAlaSerIleValSerGlnHisValArgIleLeuLysCy 217869 : ATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTAAAGTG : 217925 271 : eAlaLysAsnValGluThrThrLeuArgGluLeuPheLeuValGluValIle{Va} : 288 !!.!!:! ! :!!! ! !! ! ! ! !|||! ! !!:!!! !!!:{ } sValArg***IleValGlyGluCysSerLeuCysPheTrpPheGlnGlyMet{Ly}-+ 217926 : TGTAAGATAGATCGTTGGTGAATGCTCGCTTTGTTTTTGGTTTCAGGGGATG{AA}tt : 217981 289 : >>>> Target Intron 1 >>>> {l}SerThrLeuLeuMetCysLeuLeuGluT : 298 1305 bp {!}... ::: ::: ||| :::: ++{s}LysTyrIleTyrValAsnLeuTyrLysP 217982 : .........................ag{a}aaatatatttacgttaatttgtataaat : 219314 299 : yrTyrCysMetValGluTrpGluThrSerAspSerAlaAlaIleLeuThrTyrValIl : 317 :: ... !||||||:!!:!!!:!||| !.!!::! !:!!||||||:!!|| heGluTyrGln***GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIl 219315 : ttgaatatcaatAGGAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCAT : 219371 318 : eLeuLeuPheSerPheThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeu : 336 |||||||.!.|||.!.||||||||||||...||||||||||||:!!||||||:!!:!! eLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleVal 219372 : TCTACTTATATCCCTcactttcaacattttcatattttgctaCATAGGAGAGATCGTT : 219428 337 : LeuGlyGln : 339 !! !||| AlaGluGln 219429 : GCTGAACAg : 219439 vulgar: AmOr51 2 339 . KQ414889.1 217117 219439 + 453 M 36 108 G 1 0 M 133 399 G 0 9 M 115 345 S 0 2 5 0 2 I 0 1301 3 0 2 S 1 1 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217118 219439 453 + . gene_id 4 ; sequence AmOr51 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217118 217980 . + . KQ414889.1 exonerate:protein2genome:local exon 217118 217980 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 217981 217982 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 217981 219285 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219284 219285 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219286 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219286 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217118 219439 453 + . alignment_id 4 ; Query AmOr51 ; Align 217118 3 108 ; Align 217226 40 399 ; Align 217634 173 345 ; Align 219287 289 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 440 Query range: 5 -> 336 Target range: 226882 -> 228349 6 : AsnIleAspAsnLeuProLeuAsnAspArgTyrGluSerAspIleGlnTyrThrPheG : 25 |||:!!! ::!||| !! !.!.:!! !|||:!!..! !!:!:.!. !:!.!.| AsnLeuAlaSerLeuAlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleG 226883 : AACCTCGCGTCTCTCGCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATAC : 226940 26 : lnPheCysHisTrpIleLeuLysProLeuGlyIleTyrTyrPheIleTyrAsnGlnAl : 44 ||!!. !!.!|||:!:||||||||||||||||||!:: ! ..!:!!:: lnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpPro---SerSerArgLysSe 226941 : AGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCG---TCGTCGCGCAAAAG : 226994 45 : aAsnLysPheGluLysIleLeuSerIleIleLeuIleLeuIleCysPhePheIleIle : 63 !::!::!.!.! !!:! !!!!||| :!::!! !!!!:!!|||!:! :!:!!: rSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMet 226995 : CTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATG : 227051 64 : GlnPheValIleValProPheGlyTyrTyrIleLeuPheTyrGluLysAspMetAsnT : 83 ...|||! !:!:||| !! !|||! |||:!::!!.!. ! ! !|||! ! !!! SerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrA 227052 : AGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACA : 227111 84 : hrLysIleLysPheLeuGlyProLeuThrPheCysLeuSerAlaLeuPheLysTyrSe : 102 .!! !:!:|||.!.:!!||||||:!!:!!|||! ! !! !:!!|||.!!|||||||| snThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSe 227112 : ACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTC : 227168 103 : rTyrLeuGlyIleLysSerSerGluLeuGlyHisCysIleLysHisValGluLysAsp : 121 | ||| !.!! ! ..!..!!!::!! !.!.|||:!!:!!!..:!!:!! !||| rMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIleLysTrpAsp 227169 : CATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGAC : 227225 122 : TrpLysMetLeuGlnAsnGluAspHisArgValIleMetSerArgTyrValIleMetG : 141 ||||||! :!!::! !! !!!: !!||| !:!:||| !! !|||!.! ! | TrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrG 227226 : TGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACG : 227285 142 : lyArgAsnLeuIleThrLeuCysAlaAlaPheMetTyrThrGlyGlyLeuSerTyrHi : 160 |||||!!.|||||||||:!!|||.!! !|||:!:!:!!::... ::: ::::: lyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheValPhePheTy 227286 : GAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttcta : 227342 161 : sThrIleMetProLeuLeuSer<-><-><->LysArgLysValGluAsnPheThrIle : 176 :! !:!!:!:|||:!! !:!! !! !:!!! !! !||| !!:! ! rIleValValProIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyr 227343 : cATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTAC : 227399 177 : ArgProLeuThrTyrProGlyTyrGluAlaPheLeuAsnIleGlnLysSerProThrT : 196 ! !! !:!! !!!:!||| ! :!! !.!! !:!!:!!!:: ! |||||| ! IleGlnMetProPheProPheProLysIleIleAlaAspValArgTyrSerProPheA 227400 : ATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCA : 227459 197 : yrGluIleIleTyrCysMetHisCysIleTyrValIleValValGlyAsnIleThrMe : 215 !!||||||.!!!:!! :!:!!.! !:!! ! !||||||:!! !..!:!!||| snGluIlePhePheSerValGlnPheValThrGlyIleValLeuHisGlyValThrSe 227460 : ACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTC : 227516 216 : tAlaAlaTyrSerLeuThrThrIlePheIleThrHisAlaCysGlyGlnIleLysIle : 234 ||||||! !|||:!!.!!.!!:!:.!! ..!|||||||||||||||!!::!!:!: rAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluVal 227517 : AGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTG : 227573 235 : GlnMetLeuArgLeuGluAsnLeuLysAsnGluLysLysValLeuGluThrGlyIleG : 254 !:!!! ! !!|||! !:!!|||! :!!! !:! !! !:!!...! ! !:!:! LeuValSerTrpLeuGlyHisLeuIleAspGlyArgAlaAspMetSerLysThrLeuA 227574 : TTGGTGTCCTGGCTGGGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGG : 227633 255 : luSerHisLeuAlaValValValLysAsnHisValGluIleLeu{Ar} >>>> Tar : 269 !:..!...:!!||| !:!!|||! :!!||||||..!||||||{!.} spAspArgIleAlaSerIleValThrHisHisValArgIleLeu{As}++ 227634 : ATGATAGAATCGCTAGCATCGTCACTCACCACGTTCGAATATTG{AA}gt........ : 227682 270 : get Intron 1 >>>> {g}PheAlaLysAsnValGluThrThrLeuArgGluLeu : 281 396 bp {!}||| ! !:!!|||! !|||:!!!:!:!!:!! ++{n}PheLeuAlaLeuIleGluLysThrMetGlnGlnIle 227683 : .................ag{C}TTTCTGGCCCTCATAGAGAAAACCATGCAGCAAATA : 228110 282 : PheLeuValGluValIleValSerThrLeuLeuMetCysLeuLeuGluTyrTyrCysM : 301 !!!!|||||| !!:!!! !!!!|||:!!:!!:!!||||||:!!||||||||| !! AlaPheValGluPheLeuGlyCysThrIleIleLeuCysLeuIleGluTyrTyrIleI 228111 : GCTTTCGTAGAATTTTTAGGGTGTACAATAATTCTGTGCCTCATCGAGTATTACATCA : 228170 302 : etVal >>>> Target Intron 2 >>>> GluTrpGluThrSerAspSerAla : 310 !:..! 72 bp ||||||.!. !!!.!!!:! !.!! leThr++ ++GluTrpAsnProLysGluLeuThr 228171 : TAACGgt.........................agGAATGGAATCCGAAAGAGTTAACA : 228269 311 : AlaIleLeuThrTyrValIleLeuLeuPheSerPheThrPheAsnIleLeuIlePheC : 330 ! !:!!|||||| ! ||||||!!.||||||||||||||||||...||||||| PheAlaValThrTyrSerAlaLeuLeuLeuSerPheThrPheAsnIlePheIlePheC 228270 : TTTGCTGTAACTTACTCAGCGTTACTTTTATCCTTTAccttcaatattttcatatttt : 228329 331 : ysTyrValGlyGluLeuLeu : 336 |||||:!!||||||:!!:!! ysTyrIleGlyGluIleVal 228330 : gttaTATAGGAGAAATTGTT : 228349 vulgar: AmOr51 5 336 . KQ414889.1 226882 228349 + 440 M 33 99 G 1 0 M 128 384 G 0 9 M 101 303 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226883 228349 440 + . gene_id 5 ; sequence AmOr51 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226883 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226883 227679 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228349 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228349 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226883 228349 440 + . alignment_id 5 ; Query AmOr51 ; Align 226883 6 99 ; Align 226982 40 384 ; Align 227375 168 303 ; Align 228077 270 99 ; Align 228248 303 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 385 Query range: 11 -> 210 Target range: 294657 -> 295260 12 : LeuAsnAspArgTyrGluSerAspIleGlnTyrThrPheGlnPheCysHisTrpIleL : 31 :!!:!!|||! ! !!..!!:!|||:!: ! !!!:!.!!:!!!:!|||!.. !!:!:| MetAspAspThrAsnArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuL 294658 : ATGGACGATACTAACAGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGT : 294715 32 : euLysProLeuGlyIleTyrTyrPheIleTyrAsnGlnAlaAsnLysPheGluLysIl : 50 ||||||||:!!|||:!!!:: .!!||||||!:!!!..!!!:!|||.!..!.|||:! euLysProIleGlyLeuTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysVa 294716 : TGAAACCGATCGGTCTTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGT : 294772 51 : eLeuSerIleIleLeuIleLeuIleCysPhePheIleIleGlnPheValIleValPro : 69 !|||||||||||||||||| ! ||| !!.! !:!!! !||||||:!!|||||| lLeuSerIleIleLeuIleAlaTrpCysThrLeuThrValLeuPheValLeuValPro 294773 : CCTTTCGATAATTCTGATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCA : 294829 70 : PheGlyTyrTyrIleLeuPheTyrGluLysAspMetAsnThrLysIleLysPheLeuG : 89 ! !||||||!:! !:!!|||:!!! |||::::::... |||!!:|||.!!|||| CysGlyTyrPheCysValPheHisValLysAsnValLysLeuLysMetLysLeuLeuG 294830 : TGCGGATACTTCTGTGTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGG : 294889 90 : lyProLeuThrPheCysLeuSerAlaLeuPheLysTyrSerTyrLeuGlyIleLysSe : 108 |||||:!! !!:!! !:!! !:!!:!!.!!!:!||||||! !|||! !:!:|||!! lyProValLeuTyrSerMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysTh 294890 : GTCCGGTACTATACTCTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAAC : 294946 109 : rSerGluLeuGlyHisCysIleLysHisValGluLysAspTrpLysMetLeuGlnAsn : 127 ! !!! !!!! !|||||||||:!! !!:!!|||!!.|||||||||:!!:!!.!.||| rProAlaPheLysHisCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsn 294947 : GCCCGCGTTCAAGCATTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAAT : 295003 128 : GluAspHisArgValIleMetSerArgTyrValIleMetGlyArgAsnLeuIleThrL : 147 !!!:||||||!.!||||||! !!:! !!!.!!!::!: !!:!!..:!!! !..! ProGluHisArgAlaIleMetIleLysAsnAlaMetValThrGlnArgMetThrValA 295004 : CCGGAACACCGAGCGATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCG : 295063 148 : euCysAlaAlaPheMetTyrThrGlyGlyLeuSerTyrHisThrIleMetProLeuLe : 166 !! !.!! !.!.!!:|||!:!..!!.!:!!|||||||||.!!|||:::|||..... laPheThrIleIleIleTyrSerSerAlaValSerTyrHisAlaIleValProPhePh 295064 : CTTTTACTATTATAATCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccattttt : 295120 167 : uSerLys<-><->ArgLysValGluAsnPheThrIleArgProLeuThrTyrProGly : 183 .|||... ..!!!. !:!!||| !||||||||| !!||| !! !|||||| eSerAsnAlaLeuGluAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGly 295121 : ttcaaacgctTTGGAGAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGC : 295177 184 : TyrGluAlaPheLeuAsnIleGlnLysSerProThrTyrGluIleIleTyrCysMetH : 203 |||||| !|||:!!:!! ! ! ...||||||||||||||||||||| ! ! TyrGluLeuPheValAspAlaTyrSerSerProThrTyrGluIleIleArgThrHisL 295178 : TACGAGTTATTCGTAGACGCTTATTCCAGTCCTACCTACGAGATCATAAGAACTCATC : 295237 204 : isCysIleTyrValIleValVal : 210 !! !:!!||| !.!! !!||| euPheValTyrSerPhePheVal 295238 : TCTTTGTTTACTCGTTCTTCGTC : 295260 vulgar: AmOr51 11 210 . KQ414889.1 294657 295260 + 385 M 157 471 G 0 6 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294658 295260 385 + . gene_id 6 ; sequence AmOr51 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294658 295260 . + . KQ414889.1 exonerate:protein2genome:local exon 294658 295260 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294658 295260 385 + . alignment_id 6 ; Query AmOr51 ; Align 294658 12 471 ; Align 295135 169 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 377 Query range: 3 -> 272 Target range: 221324 -> 222137 4 : ThrAsnAsnIleAspAsnLeuProLeuAsnAspArgTyrGluSerAspIleGlnTyrT : 23 |||:!!!:!:!:..!::: !! !:!!.!. !! !|||:!!!!!:!!:!::!!! ! ThrAspSerLeuSerSerThrArgValGluTyrAspTyrLysThrAsnValLysLeuS 221325 : ACAGACAGTCTGTCTTCGACTCGTGTTGAATACGATTACAAGACGAACGTGAAATTGA : 221382 24 : hrPheGlnPheCysHisTrpIleLeuLysProLeuGlyIleTyrTyrPheIleTyrAs : 42 :! ! |||!!. !!!.!|||||||||||||||:!!|||:!!!:: ! ! !|| erValGlnLeuSerArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaAs 221383 : GCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAA : 221439 43 : nGlnAlaAsnLysPheGluLysIleLeuSerIleIleLeuIleLeuIleCysPhePhe : 61 | !::!! ! ! |||!:! !|||! ! :!::!!! !:!!:!!|||!:! ! n---IleSerThrValGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSer 221440 : C---ATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGC : 221493 62 : IleIleGlnPheValIleValProPheGlyTyrTyrIleLeuPheTyrGluLysAspM : 81 :!:||| !|||:!!:!:||||||! !.!! !|||:!::!!.!! ! ! !:!!|||: LeuIleThrPheLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspV 221494 : CTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATG : 221553 82 : etAsnThrLysIleLysPheLeuGlyProLeuThrPheCysLeuSerAlaLeuPheLy : 100 !: !!!.!!:!||||||!!.||||||||||||!:!||||||:!!! !|||!!!.!.|| alTyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLy 221554 : TCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAA : 221610 101 : sTyrSerTyrLeuGlyIleLysSerSerGluLeuGlyHisCysIleLysHisValGlu : 119 |||| ! ||| !:!! ! ..!!:!!!::!! !!.!.||||||:!!!.!:!!||| sTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGlu 221611 : GTATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAA : 221667 120 : LysAspTrpLysMetLeuGlnAsnGluAspHisArgValIleMetSerArgTyrValI : 139 !|||||||||! :!! !!... ! !!!:!! !||||||! !..! !!!.!| TrpAspTrpLysAsnIleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaI 221668 : TGGGATTGGAAGAATATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGA : 221727 140 : leMetGlyArgAsnLeuIleThrLeuCysAlaAlaPheMetTyrThrGlyGlyLeuSe : 158 ||.!.||||||...||||||! !:!!|||.!! !|||||||||!:!||| ::: lePheGlyArgArgLeuIleMetIleCysThrPhePheMetTyrSerGlyPheValPh 221728 : TTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGTACAGTggtttcgtttt : 221784 159 : rTyrHisThrIleMetProLeu<->LeuSerLysArgLysValGlu<-><->AsnPhe : 174 |||::: ! !!!:|||!!! :!!.!!|||! ! !.!:!! ||| eTyrTyrIleAlaIleProPheSerValGlyLysIleProAlaGlnAspValAsnVal 221785 : ttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgta : 221841 175 : ThrIleArgProLeuThrTyrProGlyTyrGluAlaPheLeuAsnIleGlnLysSerP : 194 |||... |||:!!..!!:!||| !! ..! !.!!:!!:!!! !!:! ! |||| ThrPheIleProMetValPheProPheSerArgPheIleValAspThrArgTyrSerP 221842 : acttttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTC : 221901 195 : roThrTyrGluIleIleTyrCysMetHisCysIleTyrValIleValValGlyAsnIl : 213 ||..! !!||||||:!:!:!! :!:!!. !!!: ! ! !:!!:!! !!:!|| roValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerIl 221902 : CTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTAT : 221958 214 : eThrMetAlaAlaTyrSerLeuThrThrIlePheIleThrHisAlaCysGlyGlnIle : 232 |||| !||||||! !||||||..!.!!!!:||| !..!|||||||||||||||!!: eThrSerAlaAlaCysSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMet 221959 : TACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATG : 222015 233 : LysIleGlnMetLeuArgLeuGluAsnLeuLysAsnGluLysLysValLeuGluThrG : 252 :!!:!: !||| ! !!|||:!!:!!|||! |||! ::! !! !:!! !.!. GlnValLeuMetSerTrpLeuLysHisLeuIleAsnGlyArgAlaAspMetCysAsnA 222016 : CAAGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGCCGGGCGGATATGTGTAACA : 222075 253 : lyIleGluSerHisLeuAlaValValValLysAsnHisValGluIleLeuArgPheAl : 271 .!:!:!!:!!!...:!!||| !:!!|||!!..!.||||||..!||||||!:!!:!!. snValAspArgArgIleAlaLysIleValAsnGlnHisValArgIleLeuGlnTyrVa 222076 : ACGTGGATAGGAGAATAGCGAAGATTGTGAATCAACACGTTCGAATATTGCAGTATGT : 222132 272 : aLys : 272 !::: lArg 222133 : ACGT : 222137 vulgar: AmOr51 3 272 . KQ414889.1 221324 222137 + 377 M 39 117 G 1 0 M 122 366 G 0 3 M 7 21 G 0 6 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221325 222137 377 + . gene_id 7 ; sequence AmOr51 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221325 222137 . + . KQ414889.1 exonerate:protein2genome:local exon 221325 222137 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221325 222137 377 + . alignment_id 7 ; Query AmOr51 ; Align 221325 4 117 ; Align 221442 44 366 ; Align 221811 166 21 ; Align 221838 173 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 375 Query range: 12 -> 242 Target range: 284496 -> 285201 13 : AsnAspArgTyrGluSerAspIleGlnTyrThrPheGlnPheCysHisTrpIleLeuL : 32 :!!...! !!::!!:!!!||| ..!|||!:! ! |||.!. !!.!|||.!!|||| AspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuL 284497 : GATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCA : 284554 33 : ysProLeuGlyIleTyrTyrPheIleTyrAsnGlnAlaAsnLysPheGluLysIleLe : 51 |||||:!!|||:!!!:: ! :!! ! ! !.!!.!! !!.||||||||| ysProIleGlyValTrpPro---LeuSerLeuCysValThrThrLeuGluLysIleSe 284555 : AACCGATTGGCGTATGGCCT---CTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAG : 284608 52 : uSerIleIleLeuIleLeuIleCysPhePheIleIleGlnPheValIleValProPhe : 70 !|||:!::!!||| |||||| !!! !|||:!:||| |||:!!:!:||||||! ! rSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCys 284609 : TTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGC : 284665 71 : GlyTyr<->TyrIleLeuPheTyrGluLysAspMetAsnThrLysIleLysPheLeuG : 89 !.! :!:||| ! ! |||:!::!!||||||||||||.!.:!!| AlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleG 284666 : GCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCG : 284725 90 : lyProLeuThrPheCysLeuSerAlaLeuPheLysTyrSerTyrLeuGlyIleLysSe : 108 ||||||||!:!||||||:!!! !||| !.!!||||||! ! !||| ! :::.! lyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGl 284726 : GTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGG : 284782 109 : rSerGluLeuGlyHisCysIleLysHisValGluLysAspTrpLysMetLeu<-><-> : 126 !.!!:!!:!!|||!!.|||:!:||| !!:!!... !||||||...:!: ! yGlyLysIleGlyGlnCysValLysAspIleArgAlaAspTrpSerLeuThrLeuSer 284783 : CGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCG : 284839 127 : <->GlnAsnGluAspHisArgValIleMetSerArgTyrValIleMetGlyArgAsnL : 144 ......|||:::...||| ||||||!!! ! !!.!! !!!:||||||::!| HisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerL 284840 : CATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTT : 284899 145 : euIleThrLeuCysAlaAlaPheMetTyrThrGlyGlyLeuSerTyrHisThrIleMe : 163 || ! !!!!||||||!.!|||||||||:!!||||||!!!! !||| !|||:!:|| euAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMe 284900 : TGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGAT : 284956 164 : tProLeuLeuSerLysArgLys<-><->ValGluAsnPheThrIleArgProLeuThr : 180 |||||||! !!!! !|||! ! :!!!!:||| |||:!:||| !!! !.!! tProLeuCysThrValArgThrGluIleIleAspAsnGluThrValArgSerGlnAla 284957 : GCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCG : 285013 181 : TyrProGlyTyrGluAlaPheLeuAsnIleGlnLysSerProThrTyrGluIleIleT : 200 !:!||| !|||...!.!.!!|||:!! !::! ||||||:!!!:!||||||:!: PheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValG 285014 : TTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGC : 285073 201 : yrCysMetHisCysIleTyrValIleValValGlyAsnIleThrMetAlaAlaTyrSe : 219 ! ! !|||!!.|||:!: !!.!.!!|||:!! !::::!!|||:!:!.!|||! !|| lnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSe 285074 : AATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAG : 285130 220 : rLeuThrThrIlePheIleThrHisAlaCysGlyGlnIleLysIleGlnMetLeuArg : 238 ||||.!!.!!:!:|||:!!! !|||!.!|||||||||.!!!:!|||! :!! !!:! rLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLys 285131 : CTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAG : 285187 239 : LeuGluAsnLeu : 242 |||!!:!!.||| LeuAspLysLeu 285188 : CTGGATAAGCTC : 285201 vulgar: AmOr51 12 242 . KQ414889.1 284496 285201 + 375 M 26 78 G 1 0 M 33 99 G 0 3 M 53 159 G 0 9 M 45 135 G 0 6 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284497 285201 375 + . gene_id 8 ; sequence AmOr51 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284497 285201 . + . KQ414889.1 exonerate:protein2genome:local exon 284497 285201 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284497 285201 375 + . alignment_id 8 ; Query AmOr51 ; Align 284497 13 78 ; Align 284575 40 99 ; Align 284677 73 159 ; Align 284845 126 135 ; Align 284986 171 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 373 Query range: 14 -> 392 Target range: 204215 -> 206401 15 : ArgTyrGluSerAspIleGlnTyrThrPheGlnPheCysHisTrpIleLeuLysProL : 34 ||| |||..!|||:!:::!|||.!! !::||| ! !|||||| ! !: ArgAlaGluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleV 204216 : AGGGCAGAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAG : 204273 35 : euGlyIleTyrTyrPheIleTyrAsnGlnAlaAsnLysPheGluLysIleLeuSerIl : 53 !!||| !:: .!! ! ||| :!!::! !||| !!:!:!!:!! !! alGlyAlaTrpProIleProValAsn---SerSerProPheThrArgLeuValArgAr 204274 : TCGGTGCGTGGCCGATTCCAGTGAAC---TCCTCTCCGTTCACGAGGCTAGTACGGCG : 204327 54 : eIleLeuIleLeuIleCysPhePheIleIleGlnPheValIleValProPheGlyTyr : 72 !||| ! !:!!:!! !:::|||:::... ...:!!||||||||| ! !! gIleGluHisValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeu 204328 : AATAGAACACGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTG : 204384 73 : TyrIleLeuPheTyrGluLysAspMetAsnThrLysIleLysPheLeuGlyProLeuT : 92 |||:!:!!!.!. ! ||||||:!! !!.! !::::!:|||.!!|||||||||:!!. TyrValPheLeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleV 204385 : TACGTGTTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCG : 204444 93 : hrPheCysLeuSerAlaLeuPheLysTyrSerTyrLeuGlyIleLysSerSerGluLe : 111 .! !||| !! ! !!!!|||||||||||| !:!! ! !::!! !..!:!!:! alAsnCysSerIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIl 204445 : TGAACTGCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAAT : 204501 112 : uGlyHisCysIleLysHisValGluLysAspTrpLysMetLeuGlnAsnGluAspHis : 130 ! ! ! !!:!:!!. !:!!..!:::|||||| !!: ! !..!!:!!::!! eGlnLysSerLeuAsnThrIleArgArgAspTrp---IleGluAlaThrAspGluAsn 204502 : TCAGAAGAGTTTGAACACCATCAGACGCGACTGG---ATAGAGGCTACGGATGAAAAT : 204555 131 : ArgValIleMetSerArgTyrValIleMetGlyArgAsnLeuIleThrLeuCysAlaA : 150 |||:!!|||.!. !! ! ! !.!! !!:||||||!..:!!:!: !:!!...|||| ArgLeuIlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaA 204556 : CGGTTGATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCG : 204615 151 : laPheMetTyrThrGlyGlyLeuSerTyrHisThrIleMetProLeuLeuSerLysAr : 169 || !|||||| !|||||||||!!!|||...||||||:!:|||||||||!!! !! laThrMetTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyTh 204616 : CCACTATGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAAC : 204672 170 : gLysVal<-><->GluAsnPheThrIleArgProLeuThrTyrProGlyTyrGluAla : 186 !! ||| !!:||| !!||||||||||||||| !!! !|||! !||| ... rIleValThrProAspAsnValThrIleArgProLeuProCysProValTyrPheVal 204673 : GATCGTAACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgtt : 204729 187 : PheLeuAsnIleGlnLysSerProThrTyrGluIleIleTyrCysMetHisCysIleT : 206 |||...||| |||:::||||||!.!|||||||||:!!!:! :!!!!. !!!: PhePheAsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetA 204730 : ttctttaacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGG : 204789 207 : yrValIleValValGlyAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePheIl : 225 !! !.!!|||..! ! !:!!! !! !.!.!!! !.!!:!! !.!!:!:|||:! laGlyPheValThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheVa 204790 : CTGGTTTTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGT : 204846 226 : eThrHisAlaCysGlyGlnIleLysIleGlnMetLeuArgLeuGluAsnLeuLysAsn : 244 ! !|||||||||.!!..!:!:!:!||| !:!! !!:!:!!.!. ||| !:!! lLeuHisAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAsp 204847 : TCTCCACGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGAT : 204903 245 : GluLysLysValLeuGluThrGlyIleGluSerHisLeuAlaValValValLysAsnH : 264 :!! ! ! :!! !|||||| !:!:.!.!!! ! :!!|||! !:!!|||:!! !!! LysAlaAspMetThrGluThrLeuValHisArgLysIleAlaAspIleValGluTyrG 204904 : AAGGCGGACATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATC : 204963 265 : isValGluIleLeu{Ar} >>>> Target Intron 1 >>>> {g}PheAlaLy : 272 !...!:!!||| !{||} 1047 bp {|} !.!! lnThrLysIleLys{Ar}++ ++{g}AsnThrGl 204964 : AGACGAAGATAAAG{AG}gt.........................ag{A}AATACAGG : 206034 273 : sAsnValGluThrThrLeuArgGluLeuPheLeuValGluValIleValSerThrLeu : 291 !... ! !! ! ! !!..! !.!.:!! !:!! !:!! !!!!|||! ! yArgSerCysPheArgAsnGlyArgThrIleIleGlnGlnArgLeu***CysThrSer 206035 : ACGATCGTGTTTTAGGAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCA : 206091 292 : LeuMetCysLeuLeuGluTyrTyrCysMetValGluTrpGluThrSerAspSerAlaA : 311 ! ! ! ! !|||! !:!!! !....!.:!! ! !::! ||||||! !||| ! ArgCysArgTyrLeuValHisSerAlaPheLeuTyrTyrAlaThrSerGlySerPheL 206092 : CGTTGCAGATATCTTGTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCT : 206151 312 : laIleLeuThrTyrValIleLeuLeuPheSerPheThrPheAsnIleLeuIlePheCy : 330 ! :!!! !! !|||||| !! ! !!! !|||!:: ::: |||||| euSerIleLysCysValIleThrTyrGln***SerThrTrpIleLeuTrpIlePheLe 206152 : TATCGATCAAGTGCGTGATTACGTATCAATGAAGTACGTGGattctttggattttttt : 206208 331 : sTyrValGlyGluLeuLeu-----LeuGlyGlnGlySerGluIleAlaThrAlaLeuT : 348 !:!! !..! !:!!#####!!! !|||..! !! :!:!.! !.!!! !! uThrLeuThrArgSerIle#####Phe***GlnAsnHisValValGlyLeuThrSerC 206209 : aaCTCTTACTAGAAGTATTACCATTTTTAACAGAACCACGTCGTGGGATTGACATCTT : 206267 349 : yrGluIleGluTrpTyrAsnLeuProGlyArgLysAlaArgAspIleIleLeuLeuLe : 367 ! !:!:.!.||||||..!||||||..!||| ! ||||||..!!!:||||||:!!:! ysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIl 206268 : GCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAAT : 206324 368 : uValIleSerLysTyrProProLysLeuThrAlaGlyLysIlePheIleLeuSerMet : 386 !!.!!!:|||!!.|||||| !||||||||||||||||||!!:||| !:!!|||:!: eAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeu 206325 : TGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTA : 206381 387 : AsnThrPheSerValVal : 392 !!:!|||!!!! !||| AlaSerPheThrAspVal 206382 : GCTAGTTTCACCGATGTA : 206401 vulgar: AmOr51 14 392 . KQ414889.1 204215 206401 + 373 M 28 84 G 1 0 M 79 237 G 1 0 M 48 144 G 0 6 M 97 291 S 0 2 5 0 2 I 0 1043 3 0 2 S 1 1 M 67 201 F 0 5 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204216 206401 373 + . gene_id 9 ; sequence AmOr51 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 204216 204979 . + . KQ414889.1 exonerate:protein2genome:local exon 204216 204979 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 204980 204981 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 204980 206026 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206025 206026 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206027 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206027 206401 . + . insertions 0 ; deletions 0 ; frameshifts 5 KQ414889.1 exonerate:protein2genome:local similarity 204216 206401 373 + . alignment_id 9 ; Query AmOr51 ; Align 204216 15 84 ; Align 204300 44 237 ; Align 204537 124 144 ; Align 204687 172 291 ; Align 206028 270 201 ; Align 206234 337 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 363 Query range: 99 -> 301 Target range: 304359 -> 305035 100 : LysTyrSerTyrLeuGlyIleLysSerSerGluLeuGlyHisCysIleLysHisValG : 119 :!!|||||| ||| ||| ......|||! ! ! ! ! ! !!:!!. GlnTyrSerIleLeuProCysLysLeuLysArgLeuValPheArg***GlyAspLeuS 304360 : CAATATTCTATACTTccttgcaaattaaaacgtttaGTGTTTCGATAAGGGGATCTCT : 304417 120 : luLysAspTrpLysMetLeuGlnAsnGluAspHisArgValIleMetSerArgTyrVa : 138 ..! ! !:::!!..!:!!:!!::! !!|||! !!!:||| !!:!|||! erThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysTyrGl 304418 : CTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGG : 304474 139 : lIleMetGlyArgAsnLeuIleThrLeuCysAlaAlaPheMetTyrThrGlyGlyLeu : 157 ! !|||||||||||||||! ! !:!!|||||| !|||||||||||||||||| ! yGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThr 304475 : GCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACC : 304531 158 : SerTyrHisThrIleMetProLeuLeuSerLysArgLysValGlu<-><->AsnPheT : 175 ! !|||||||||:!!|||! !!!! !!!! !! ! ! |||!!: ||| !| IleTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgT 304532 : ATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTA : 304591 176 : hrIleArgProLeuThrTyrProGlyTyrGluAlaPheLeuAsnIleGlnLysSerPr : 194 |||||!:!||||||..!|||||| !|||...|||!!.!!!:!!:!!|||! !||||| hrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerPr 304592 : CGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCC : 304648 195 : oThrTyrGluIleIleTyrCysMetHisCysIleTyrValIleValValGlyAsnIle : 213 |! !||||||:!::!!|||! !:!:||||||!!:! !! ! !|||:!! !::!||| oIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIle 304649 : TATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATA : 304705 214 : ThrMetAlaAlaTyrSerLeuThrThrIlePheIleThrHisAlaCysGlyGlnIleL : 233 ||| !.!|||! !.!!|||.!!.!!:!!||| !||||||||||||||||||||| ThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleA 304706 : ACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTG : 304765 234 : ysIleGlnMetLeuArgLeuGluAsnLeuLysAsnGluLysLysValLeuGluThrGl : 252 ! ||| |||! !||||||! :!!||| |||...|||:!! ..!:!!! spIleValMetSerArgLeuGlyAspLeuValAsnSerLysGlu------SerSerAs 304766 : ATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAA------TCATCTGA : 304816 253 : yIleGluSerHisLeuAlaValValValLysAsnHisValGluIleLeu{Ar} >>> : 269 !:!!!!:!.!!..||| !! !:!!|||:!!:!!|||:!!..!||||||{||} pLeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIleLeu{Ar}++ 304817 : TTTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTA{AG}gt... : 304871 270 : > Target Intron 1 >>>> {g}PheAlaLysAsnValGluThrThrLeuArgG : 280 70 bp {|}|||:!! !! |||:!!|||..!|||!:!| ++{g}PheSerAlaIleValGlnThrValLeuGlnG 304872 : ......................ag{A}TTCTCGGCAATAGTGCAAACAGTGTTGCAAG : 304970 281 : luLeuPheLeuValGluValIleValSerThrLeuLeuMetCysLeuLeuGluTyrTy : 299 ||:!!! !!!!:!!||| !!|||! !||||||||||||!!:||||||||||||||||| luValCysPheLeuGluPheIleGlySerThrLeuLeuIleCysLeuLeuGluTyrTy 304971 : AAGTATGCTTCTTGGAATTCATTGGTTCTACCTTACTGATATGTCTACTTGAATACTA : 305027 300 : rCysMet : 301 ||||!!: rCysIle 305028 : CTGTATA : 305035 vulgar: AmOr51 99 301 . KQ414889.1 304359 305035 + 363 M 73 219 G 0 6 M 75 225 G 2 0 M 19 57 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304360 305035 363 + . gene_id 10 ; sequence AmOr51 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 304360 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304360 304868 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305035 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305035 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304360 305035 363 + . alignment_id 10 ; Query AmOr51 ; Align 304360 100 219 ; Align 304585 173 225 ; Align 304810 250 57 ; Align 304940 270 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 354 Query range: 15 -> 272 Target range: 212854 -> 213631 16 : TyrGluSerAspIleGlnTyrThrPheGlnPheCysHisTrpIleLeuLysProLeuG : 35 ||||||!.! :::... :::... !!:: !!.!|||:!!||||||||| !| TyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrG 212855 : TACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGG : 212912 36 : lyIleTyrTyrPheIleTyrAsnGlnAlaAsnLysPheGluLysIleLeuSerIleIl : 54 ||:!:!:: ! ! ! ::! ! !.!::: !.!!||||||! !:!!:!! !:! lyLeuTrpPro---AspLysSerTyrValSerProIleGluLysAsnIleAlaArgLe 212913 : GTTTGTGGCCC---GACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATT : 212966 55 : eLeuIleLeuIleCysPhePheIleIleGlnPheValIleValProPheGlyTyrTyr : 73 ::!!! ! !:!!|||!:! !:!:||| !:!:!!:!!:!!|||! !.!!! ||| uValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyr 212967 : GGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTAC : 213023 74 : IleLeuPheTyrGluLysAspMetAsnThrLysIleLysPheLeuGlyProLeuThrP : 93 :!:!!!.!! !!! !::::::::: :::|||:!!!!.!!!||| !!!!.!!| ValPheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheAlaP 213024 : GTGTTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTGCAT : 213083 94 : heCysLeuSerAlaLeuPheLysTyrSerTyrLeuGlyIleLysSerSerGluLeuGl : 112 |||||:!!:!!||||||!::|||||| !! ||| !:!! ! .!!..!!!::!! ! heCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleAr 213084 : TTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCG : 213140 113 : yHisCysIleLysHisValGluLysAspTrpLysMetLeuGlnAsnGluAspHisArg : 131 ! |||:!!:!!|||:!!:!! ! |||||||||! :!! !:!!|||!!: !!!:! gThrCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLys 213141 : TACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAA : 213197 132 : ValIleMetSerArgTyrValIleMetGlyArgAsnLeuIleThrLeuCysAlaAlaP : 151 ! !||||||:!! ! !!!.!! !.!.|||!:!!..:!!:!:|||:!!|||||| !| GluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPheP 213198 : GAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCT : 213257 152 : heMetTyrThrGlyGlyLeuSerTyrHisThrIleMetProLeuLeuSerLysArgLy : 170 |||||||||||||| ! !! !||| ! !:!!:!:|||:!! !:!! ! !:!! heMetTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLysMe 213258 : TCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAAT : 213314 171 : sValGlu<-><-><->AsnPheThrIleArgProLeuThrTyrProGlyTyrGluAla : 186 !|||! ! ||| ! |||.!!|||! !:!!..! !|||! !! ..! ! tValAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSerArgPhe 213315 : GGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTT : 213371 187 : PheLeuAsnIleGlnLysSerProThrTyrGluIleIleTyrCysMetHisCysIleT : 206 .!!:!!:!!:!!!:! ! ||||||..! !!||||||.!!!:!! !!:!!. !||| IleValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleIleA 213372 : ATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAG : 213431 207 : yrValIleValValGlyAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePheIl : 225 !! !:!!:!!:!! ! !|||.!!:!!!.!|||! !||||||.!!.!!:!:||| laGlyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPheAl 213432 : CTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGC : 213488 226 : eThrHisAlaCysGlyGlnIleLysIleGlnMetLeuArgLeuGluAsnLeuLysAsn : 244 ..!|||||||||||||||!!: ||| !||| ! !!||||||:!!|||! !:!! aValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAsp 213489 : GGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGAC : 213545 245 : GluLysLysValLeuGluThrGlyIleGluSerHisLeuAlaValValValLysAsnH : 264 ! !:!:!!! !:!!...! !..!:!:!!:..!...:!!||||||:!!|||!!..!.| GlyArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleValAsnGlnH 213546 : GGTAGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGC : 213605 265 : isValGluIleLeuArgPheAlaLys : 272 |||||..!||||||!:!!::!.!:!! isValArgIleLeuLysTrpValGlu 213606 : ATGTGCGGATACTGAAGTGGGTGGAA : 213631 vulgar: AmOr51 15 272 . KQ414889.1 212854 213631 + 354 M 23 69 G 1 0 M 133 399 G 0 9 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212855 213631 354 + . gene_id 11 ; sequence AmOr51 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212855 213631 . + . KQ414889.1 exonerate:protein2genome:local exon 212855 213631 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212855 213631 354 + . alignment_id 11 ; Query AmOr51 ; Align 212855 16 69 ; Align 212924 40 399 ; Align 213332 173 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 354 Query range: 15 -> 344 Target range: 259754 -> 261859 16 : TyrGluSerAspIleGlnTyrThrPheGlnPheCysHisTrpIleLeuLysProLeuG : 35 !:! ||| !!! !.!.|||!:!.!!|||||| !!..|||.!!|||||||||:!!| PheThrSerHisSerAspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleG 259755 : TTCACTAGCCACAGTGACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAG : 259812 36 : lyIleTyrTyrPheIleTyrAsnGlnAlaAsnLysPheGluLysIleLeuSerIleIl : 54 || !!:: !! ::!....!!!.!!:!.!!|||||||||:!!|||:!!|| lyAlaTrpPro---ProSerSerSerThrThrArgLeuGluLysIleIleSerValIl 259813 : GCGCTTGGCCA---CCTTCATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTAT : 259866 55 : eLeuIleLeuIleCysPhePheIleIleGlnPheValIleValProPheGlyTyrTyr : 73 |||||||!!!||||||!:! !! !|||! ! !!..!:!::!!|||! !! ! !:!! eLeuIlePheIleCysTyrSerThrIleLeuValThrLeuIleProCysValLeuHis 259867 : CCTGATCTTTATCTGCTACAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCAC : 259923 74 : IleLeuPheTyrGluLysAspMetAsnThrLysIleLysPheLeuGlyProLeuThrP : 93 !!:|||.!! ! :!!:!!..!:!! !!! !|||! ||| ! ||||||||||||||| MetLeuLeuGluLysGluSerLeuTyrMetLysThrLysValLeuGlyProLeuThrH 259924 : ATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCC : 259983 94 : heCysLeuSerAlaLeuPheLysTyrSerTyrLeuGlyIleLysSerSerGluLeuGl : 112 !!! !!! !!.!! !.!!!!.|||!!! ||| !:!:!:!.!!!!!!!::!! isTrpPheValGlyCysIleAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLe 259984 : ACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACT : 260040 113 : yHisCysIleLysHisValGluLysAspTrpLysMetLeuGlnAsnGluAspHisArg : 131 ! !|||:!::!!|||||||||!!.||||||!:!!!::!! !!..||| ! !!!:! uSerCysValGluHisValGluAsnAspTrpArgIleIleThrArgGluLysAspGln 260041 : TAGCTGCGTGGAACACGTGGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAG : 260097 132 : ValIleMetSerArgTyrValIleMetGlyArgAsnLeuIleThrLeuCysAlaAlaP : 151 !:!:|||! !||||||!.!! !.!.|||||| !!:!! !.!!! !|||||||||| AsnValMetLeuArgTyrAlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaP 260098 : AACGTGATGTTGAGATACGCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTT : 260157 152 : heMetTyrThrGlyGlyLeuSerTyrHisThrIleMetProLeuLeuSerLys<->Ar : 169 ||:!! ! !|||! !|||!!!!:! ! !:!!! ! !||| !!!!:!! ! heValGlnGlyGlyValLeuCysPheCysLeuValThrValLeuSerThrGluValIl 260158 : TCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGAT : 260214 170 : gLysValGluAsnPheThr<-><->IleArgProLeuThrTyrProGlyTyrGluAla : 186 !:!!|||! !||| ||| :!!!.!! !||| !!! ! !!! !|||:!!! ! eGlnValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaValTyrLysGlu 260215 : ACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAG : 260271 187 : PheLeuAsnIleGlnLysSerProThrTyrGluIleIleTyrCysMetHisCysIleT : 206 .!.:!!|||:!:.!. ! ||||||! ! !!||||||:!! ! !:!!!!.! !:!!! LeuIleAsnValAsnAspSerProMetAsnGluIleValLeuValValGlnPheValS 260272 : CTGATAAACGTGAACGACAGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCT : 260331 207 : yrValIleValValGlyAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePheIl : 225 ! !.!!:!!|||..!:::! !|||:!:!.! !!:!||||||.!!.!!:!!.!.! erGlyPheIleValAsnSerSerThrValGlyIlePheSerLeuAlaAlaValLeuTh 260332 : CGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGAC : 260388 226 : eThrHisAlaCysGlyGlnIleLysIleGlnMetLeuArgLeuGluAsnLeuLysAsn : 244 !.!!|||||||||||||||:!:!!.:!:! ||| ! !!:!! !.!.!!! !:!! rAlaHisAlaCysGlyGlnLeuAsnValLeuMetGluTrpIleThrGluPheValAsp 260389 : CGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAATGGATCACGGAGTTTGTGGAC : 260445 245 : GluLysLysValLeuGluThrGlyIleGlu<->SerHisLeuAlaValValValLysA : 263 |||..!!:! ! !:!!! ! ! ! !.!.!.:!!!.!|||:!!|||:!!: GluSerArgAsnArgLysLysLysAlaProPheLysGluIleGlyValIleValGluH 260446 : GAGTCGAGGAACAGGAAGAAAAAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAAC : 260505 264 : snHisValGluIleLeuArgPheAlaLysAsnValGluThrThrLeuArgGluLeuPh : 282 !!|||:!!..! !|||! !! ! ! ! !! ! ||| !:!!||| !! !.! isHisLeuArgAlaLeuThr***AspLeuPheAspIleThrPheValArg***ArgIl 260506 : ATCATTTGAGAGCACTCACGTAAGATTTGTTTGATATTACTTTTGTACGATAAAGGAT : 260562 283 : eLeuValGluValIleValSerThrLeuLeuMetCysLeu{Le} >>>> Target : 296 !!!!:!! ..!:!!! !||||||:::::: |||{:!} 110 ePheIleIleThrValGlySerThrIleIle***LysLeu{Il}++ 260563 : TTTTATAATTACGGTAGGATCTactataatttgaaaatta{at}gt............ : 260608 297 : Intron 1 >>>> {u}GluTyrTyrCysMetValGluTrpGluThrSerAspSerA : 310 9 bp {!} :::::: ::: ||||||! !..!|||! ! -+{e}TyrPhePheLeuLeuGlnGluTrpAlaGluGlnAspIleG 260609 : .............tg{a}tatttctttcttttgcagGAATGGGCTGAGCAAGATATAC : 261755 311 : laAlaIleLeuThrTyrValIleLeuLeuPheSerPheThrPheAsnIleLeuIlePh : 329 ! !:!:! !|||||| !!!!::!!|||.!.:!!.!! !||||||:!!!!!|||.! lnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheIleIl 261756 : AAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAAT : 261812 330 : eCysTyrValGlyGluLeuLeuLeuGlyGlnGlySerGluIleAla : 344 !||||||:!!||||||:!!||| !! !|||! !..!.!.:!:||| eCysTyrIleGlyGluIleLeuThrGluGlnValGlnHisLeuAla 261813 : CTGTTACATCGGTGAAATACTAACGGAACAGGTACAACATTTGGca : 261859 vulgar: AmOr51 15 344 . KQ414889.1 259754 261859 + 354 M 23 69 G 1 0 M 129 387 G 0 3 M 7 21 G 0 6 M 79 237 G 0 3 M 41 123 S 0 2 5 0 2 I 0 1105 3 0 2 S 1 1 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259755 261859 354 + . gene_id 12 ; sequence AmOr51 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259755 260605 . + . KQ414889.1 exonerate:protein2genome:local exon 259755 260605 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 260606 260607 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 260606 261714 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261713 261714 . + . intron_id 0 ; splice_site "tg" KQ414889.1 exonerate:protein2genome:local cds 261715 261859 . + . KQ414889.1 exonerate:protein2genome:local exon 261715 261859 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259755 261859 354 + . alignment_id 12 ; Query AmOr51 ; Align 259755 16 69 ; Align 259824 40 387 ; Align 260214 169 21 ; Align 260241 176 237 ; Align 260481 255 123 ; Align 261716 297 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 350 Query range: 12 -> 242 Target range: 278549 -> 279254 13 : AsnAspArgTyrGluSerAspIleGlnTyrThrPheGlnPheCysHisTrpIleLeuL : 32 :!!...! !!::.!.!!!||| ..!|||!:! ! |||.!. !!.!|||.!!|||| AspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuL 278550 : GATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCA : 278607 33 : ysProLeuGlyIleTyrTyrPheIleTyrAsnGlnAlaAsnLysPheGluLysIleLe : 51 |||||:!!|||:!!!:: ! :!! ! ! !.!!.!! !!.||||||||| ysProIleGlyValTrpPro---LeuSerLeuCysValThrThrLeuGluLysIleSe 278608 : AACCGATTGGCGTATGGCCT---CTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAG : 278661 52 : uSerIleIleLeuIleLeuIleCysPhePheIleIleGlnPheValIleValProPhe : 70 !|||:!::!!||| |||||| !!! !|||:!:||| |||:!!:!:||||||! ! rSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCys 278662 : TTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGC : 278718 71 : GlyTyr<->TyrIleLeuPheTyrGluLysAspMetAsnThrLysIleLysPheLeuG : 89 !.! :!:||| ! ! |||:!::!!||||||||||||.!.:!!| AlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleG 278719 : GCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCG : 278778 90 : lyProLeuThrPheCysLeuSerAlaLeuPheLysTyrSerTyrLeuGlyIleLysSe : 108 ||||||||!:!|||||| !! !||| !.!!||||||! ! !||| ! :::.! lyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGl 278779 : GTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGG : 278835 109 : rSerGluLeuGlyHisCysIleLysHisValGluLysAspTrpLysMet<-><-><-> : 125 !.!!:!!:!!||| ! |||:!:!!. !!:!!...! !||||||...:!: yGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSer 278836 : CGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCG : 278892 126 : LeuGlnAsnGluAspHisArgValIleMetSerArgTyrValIleMetGlyArgAsnL : 144 ! !!::...|||:::...||| ||||||!!! ! !!.!! !!!:||||||::!| TyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerL 278893 : TATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTT : 278952 145 : euIleThrLeuCysAlaAlaPheMetTyrThrGlyGlyLeuSerTyrHisThrIleMe : 163 || ! !!!! !!|||!.!|||||||||:!!||||||:!!! !||| !.!!:!:|| euAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMe 278953 : TGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGAT : 279009 164 : tProLeuLeuSerLysArgLys<-><->ValGluAsnPheThrIleArgProLeuThr : 180 |||||||!!!:!! !|||! ! :!!!!:||| |||:!:||| !!! !.!! tProLeuPheAlaValArgThrGluIleIleAspAsnGluThrValArgSerGlnAla 279010 : GCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCG : 279066 181 : TyrProGlyTyrGluAlaPheLeuAsnIleGlnLysSerProThrTyrGluIleIleT : 200 !:!||| !|||...!.!.!!|||:!! !::! ||||||:!!!:!||||||:!: PheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValG 279067 : TTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGC : 279126 201 : yrCysMetHisCysIleTyrValIleValValGlyAsnIleThrMetAlaAlaTyrSe : 219 ! ! !|||!!.|||:!: !!.!.!!|||:!! !::::!!|||:!:!.!|||! !|| lnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSe 279127 : AATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAG : 279183 220 : rLeuThrThrIlePheIleThrHisAlaCysGlyGlnIleLysIleGlnMetLeuArg : 238 ||||! !.!!:!:|||:!!! !|||!.!|||||||||.!!!:!|||! :!! !!:! rLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLys 279184 : CTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAG : 279240 239 : LeuGluAsnLeu : 242 |||!!:!!.||| LeuAspLysLeu 279241 : CTGGATAAGCTC : 279254 vulgar: AmOr51 12 242 . KQ414889.1 278549 279254 + 350 M 26 78 G 1 0 M 33 99 G 0 3 M 52 156 G 0 9 M 46 138 G 0 6 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278550 279254 350 + . gene_id 13 ; sequence AmOr51 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278550 279254 . + . KQ414889.1 exonerate:protein2genome:local exon 278550 279254 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278550 279254 350 + . alignment_id 13 ; Query AmOr51 ; Align 278550 13 78 ; Align 278628 40 99 ; Align 278730 73 156 ; Align 278895 125 138 ; Align 279039 171 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 341 Query range: 11 -> 269 Target range: 208182 -> 208962 12 : LeuAsnAspArgTyrGluSerAspIleGlnTyrThrPheGlnPheCysHisTrpIleL : 31 |||||| !.!|||:!!!:!|||:!:...!:!!.! !!!::.!. ! |||! | LeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrL 208183 : CTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGT : 208240 32 : euLysProLeuGlyIleTyrTyrPheIleTyrAsnGlnAlaAsnLysPheGluLysIl : 50 ||||| !:!!||| !!:: ! :!!!:: ::! !!!.|||!!.! euLysIleIleGlySerTrpProArgSerIleAspArg---SerTrpLeuGluAsnSe 208241 : TGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGT---TCCTGGTTAGAGAACAG : 208294 51 : eLeuSerIleIleLeuIleLeuIleCysPhePheIleIleGlnPheValIleValPro : 69 !! ! !|||:!!|||! !:!!:!! !! !! !:!::!! |||:!!:!::!!||| rGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIlePro 208295 : CCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCG : 208351 70 : PheGlyTyrTyrIleLeuPheTyrGluLysAspMetAsnThrLysIleLysPheLeuG : 89 !||| !:! :!!.!! ! :!!|||.!. !! !:!!:!!|||.!!! !. ThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysS 208352 : ACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTA : 208411 90 : lyProLeuThrPheCysLeuSerAlaLeuPheLysTyrSerTyrLeuGlyIleLysSe : 108 !! !!|||!:!|||! !:!!! !|||!!! |||||| ! !:!! !:!!:::.. erAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGl 208412 : GCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGA : 208468 109 : rSerGluLeuGlyHisCysIleLysHisValGluLysAspTrpLysMetLeuGlnAsn : 127 !.!!!!::!! !! ! |||:!!:!!:!!|||||| ||||||!:!! :!!:!!:!! uGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHis 208469 : GGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCAC : 208525 128 : GluAspHisArgValIleMetSerArgTyrValIleMetGlyArgAsnLeuIleThrL : 147 |||!!: !!||| !||||||! ! ! !!!.!! !.!.!.!|||!!.||||||..!: GluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValI 208526 : GAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGA : 208585 148 : euCysAlaAlaPheMetTyrThrGlyGlyLeuSerTyrHisThrIleMetProLeuLe : 166 !!|||!.!|||||||||||| !||| ::: |||::: ! !:!!|||||| leCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuTh 208586 : TATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCAC : 208642 167 : uSerLysArgLysValGlu<-><-><->AsnPheThrIleArgProLeuThrTyrPro : 182 ! !! ! !:! |||||| |||!!.||| !||| !|||..!|||||| rArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrPro 208643 : TCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCT : 208699 183 : GlyTyrGluAlaPheLeuAsnIleGlnLysSerProThrTyrGluIleIleTyrCysM : 202 ! ! !:!! !.!!|||:!!:!!!:! ! ||||||..! !!||||||.!!||| : ValProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrV 208700 : GTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGG : 208759 203 : etHisCysIleTyrValIleValValGlyAsnIleThrMetAlaAlaTyrSerLeuTh : 221 !:!!.! :!:! ! !.!!|||!.! !|||||||||:!:!.!|||! !.!!|||.! alGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAl 208760 : TACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGC : 208816 222 : rThrIlePheIleThrHisAlaCysGlyGlnIleLysIleGlnMetLeuArgLeuGlu : 240 !.!!:!:.!! ! !|||||||||||||||:!::!!||| !|||! ! !!:!!||| aAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGlu 208817 : CGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAG : 208873 241 : AsnLeuLysAsnGluLysLysValLeuGluThrGlyIleGluSerHisLeuAlaValV : 260 !!.||| :!!! !::!:!!! ! !|||! !..!:!:!!:..!...|||||| !: LysLeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnI 208874 : AAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATA : 208933 261 : alValLysAsnHisValGluIleLeuArg : 269 !!|||:!!.!.||||||..!:!::!!!:! leValGluGlnHisValArgValIleLys 208934 : TCGTGGAGCAGCATGTTCGAGTGATCAAG : 208962 vulgar: AmOr51 11 269 . KQ414889.1 208182 208962 + 341 M 32 96 G 1 0 M 128 384 G 0 9 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208183 208962 341 + . gene_id 14 ; sequence AmOr51 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208183 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208183 208962 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208183 208962 341 + . alignment_id 14 ; Query AmOr51 ; Align 208183 12 96 ; Align 208279 45 384 ; Align 208672 173 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 310 Query range: 2 -> 269 Target range: 266580 -> 267390 3 : SerThrAsnAsnIleAspAsnLeuProLeuAsnAspArgTyrGluSerAspIleGlnT : 22 ||||||! !! !!!::::||| !:!!.!.! !.! .!.||| ! !.!.| SerThrMetAlaAsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspT 266581 : TCCACGATGGCTAACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATT : 266638 23 : yrThrPheGlnPheCysHisTrpIleLeuLysProLeuGlyIleTyrTyrPheIleTy : 41 ||!:!.!.|||!!. !!..|||.!!|||||||||:!!||| !!:: :!: yrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeu-- 266639 : ACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTG-- : 266695 42 : rAsnGlnAlaAsnLysPheGluLysIleLeuSerIleIleLeuIleLeuIleCysPhe : 60 :::! .!!::!|||.!!|||::!|||:!!||| ! !||||||:!!||||||!:! -SerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyr 266696 : -TCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTAC : 266749 61 : PheIleIleGlnPheValIleValProPheGlyTyrTyrIleLeuPheTyrGluLysA : 80 ! ! !|||! !|||..!:!!:!!|||! ! !!:!:!!:!!:!!.!. ! !!::!!. CysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluS 266750 : TGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGA : 266809 81 : spMetAsnThrLysIleLysPheLeuGlyProLeuThrPheCysLeuSerAlaLeuPh : 99 .!!!:..!||||||:!:||| ! !!!|||||||||!:! !!! !!! !!.! !.! erIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIl 266810 : GTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAAT : 266866 100 : eLysTyrSerTyrLeuGlyIleLysSerSerGluLeuGlyHisCysIleLysHisVal : 118 !!!.|||!!! ||| !:!!:::|||!.!|||:!! !! !|||:!!:!!|||:!! eAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMet 266867 : TAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATG : 266923 119 : GluLysAspTrpLysMetLeuGlnAsnGluAspHisArgValIleMetSerArgTyrV : 138 :!!! !||||||!:!!!::!! !.. !!!: !!!:! !:!:|||! !!:! !!! GlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnA 266924 : CAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACG : 266983 139 : alIleMetGlyArgAsnLeuIleThrLeuCysAlaAlaPheMetTyrThrGlyGlyLe : 157 .!! !!:|||||| !!:!! !! !!!!||||||||||||||| ! !|||! !|| laArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLe 266984 : CGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCT : 267040 158 : uSerTyrHisThrIleMetProLeu<->LeuSerLysArgLysValGluAsnPheThr : 175 |.!!||| !..!|||! ! !!!!! :!!..!! !:!!|||! ||| ||| uGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThr 267041 : CGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACT : 267097 176 : <-><->IleArgProLeuThrTyrProGlyTyrGluAlaPheLeuAsnIleGlnLysS : 193 :!!!.!! !||| !!! ! !!! !|||:!! !.!.:!! :!!.!.! | ArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrS 267098 : AGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCA : 267157 194 : erProThrTyrGluIleIleTyrCysMetHisCysIleTyrValIleValValGlyAs : 212 |||||||| !!||||||:!! ! ! !!.! !:!!! ! !.!!:!!|||..!:: erProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSe 267158 : GCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTC : 267214 213 : nIleThrMetAlaAlaTyrSerLeuThrThrIlePheIleThrHisAlaCysGlyGln : 231 :! !..!:!:!.!|||!:!||||||.!!.!!:!:||| .!!||||||||||||||| rSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGln 267215 : GAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAG : 267271 232 : IleLysIleGlnMetLeuArgLeuGluAsnLeuLysAsnGluLysLysValLeuGluT : 251 :!:!..:!:! !|||:!! !!:!!:!!.!.!!! !|||..!...!:!! ! !.!.! LeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnL 267272 : CTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATA : 267331 252 : hrGlyIle<->GluSerHisLeuAlaValValValLysAsnHisValGluIleLeuAr : 269 !..!:!! ..! ! :!!!.!|||||||||:!!:!!|||:!!..!:!!||||| ysAsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeuAr 267332 : AGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGAG : 267388 270 : g : 269 | g 267389 : G : 267390 vulgar: AmOr51 2 269 . KQ414889.1 266580 267390 + 310 M 38 114 G 1 0 M 124 372 G 0 3 M 10 30 G 0 6 M 78 234 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266581 267390 310 + . gene_id 15 ; sequence AmOr51 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266581 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266581 267390 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 266581 267390 310 + . alignment_id 15 ; Query AmOr51 ; Align 266581 3 114 ; Align 266695 42 372 ; Align 267070 166 30 ; Align 267106 176 234 ; Align 267343 254 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 309 Query range: 14 -> 269 Target range: 274362 -> 275136 15 : ArgTyrGluSerAspIleGlnTyrThrPheGlnPheCysHisTrpIleLeuLysProL : 34 !.!!:!!!:||| !! !.!.|||!:!!!.|||!!. !!..|||.!!|||||||||: AsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 274363 : AATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTA : 274420 35 : euGlyIleTyrTyrPheIleTyrAsnGlnAlaAsnLysPheGluLysIleLeuSerIl : 53 !!||| !:: :!! !:::! .!!!..|||||||||::!||||||||| leGlyAlaTrpPro---LeuAlaSerProThrThrLysPheGluArgIleLeuSerHi 274421 : TAGGCGCGTGGCCG---TTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACA : 274474 54 : eIleLeuIleLeuIleCysPhePheIleIleGlnPheValIleValProPheGlyTyr : 72 !:::||||||...:::|||::!! !.!!|||! ! !..!:!!:!!||| ! !!:! sLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIlePhe 274475 : CCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTT : 274531 73 : TyrIleLeuPheTyrGluLysAspMetAsnThrLysIleLysPheLeuGlyProLeuT : 92 :!!|||:!!.!. !!::!!..!:!::!! !|||:!:|||!!.|||||||||||| HisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuG 274532 : CACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCG : 274591 93 : hrPheCysLeuSerAlaLeuPheLysTyrSerTyrLeuGlyIleLysSerSerGluLe : 111 ! !!! !!!! !!.! !.!!!!.|||!!! ||| !:!!:::|||!.!|||:! lyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIl 274592 : GTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGAT : 274648 112 : uGlyHisCysIleLysHisValGluLysAspTrpLysMetLeuGlnAsnGluAspHis : 130 ! !! !|||:!::!!|||:!!:!!! !||||||!:!!!::!! !.. !!!: !! eArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAsp 274649 : ACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGAT : 274705 131 : ArgValIleMetSerArgTyrValIleMetGlyArgAsnLeuIleThrLeuCysAlaA : 150 !:! !:!:|||! !!:! !!!.!! !!:|||||| !!:!! ! !!!!||||||| GlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaA 274706 : CAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGG : 274765 151 : laPheMetTyrThrGlyGlyLeuSerTyrHisThrIleMetProLeuLeuSerLysAr : 169 |||||||| ! !|||! !|||!!!||| !..!|||! !!!!! !! !:!!! laPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGlnTh 274766 : CGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGAC : 274822 170 : gLysVal<-><-><->GluAsnPheThrIleArgProLeuThrTyrProGlyTyrGlu : 185 ! ! |||!.! |||:!:!.! !||| !!! ! !!.!|||:!! rValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLys 274823 : CGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAG : 274879 186 : AlaPheLeuAsnIleGlnLysSerProThrTyrGluIleIleTyrCysMetHisCysI : 205 !.!!:!! :!:.!.! !||||||||| !!||||||:!! !..! !!!.! !: LysIleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnPheV 274880 : AAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCG : 274939 206 : leTyrValIleValValGlyAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePh : 224 !:! ! !.!!:!!|||..!:::! !.!!:!:!.!|||!:!||||||.!!.!!:!:|| alSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPh 274940 : TGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTT : 274996 225 : eIleThrHisAlaCysGlyGlnIleLysIleGlnMetLeuArgLeuGluAsnLeuLys : 243 | .!!||||||! !||||||:!:!..:!:! !|||:!! !!:!! .!.!!! ! eAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheVal 274997 : CGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTG : 275053 244 : AsnGluLysLysValLeuGluThrGlyIleGlu<->SerHisLeuAlaValValValL : 262 |||.!....!:!! ... ...::: |||.!.:!!!.!|||||||||: AsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValValValG 275054 : AATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCG : 275113 263 : ysAsnHisValGluIleLeuArg : 269 !!:!!|||:!!..!:!!|||||| luHisHisLeuArgValLeuArg 275114 : AACATCATCTGAGGGTACTCAGG : 275136 vulgar: AmOr51 14 269 . KQ414889.1 274362 275136 + 309 M 24 72 G 1 0 M 132 396 G 0 9 M 83 249 G 0 3 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274363 275136 309 + . gene_id 16 ; sequence AmOr51 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274363 275136 . + . KQ414889.1 exonerate:protein2genome:local exon 274363 275136 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 274363 275136 309 + . alignment_id 16 ; Query AmOr51 ; Align 274363 15 72 ; Align 274435 40 396 ; Align 274840 172 249 ; Align 275092 255 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 256 Query range: 13 -> 269 Target range: 262825 -> 263602 14 : AspArgTyrGluSerAspIleGlnTyrThrPheGlnPheCysHisTrpIleLeuLysP : 33 !!:!!!!:!! ||| !! !.!.|||!:!.!.|||.!. !!..|||:!:||||||| GluSerPheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysP 262826 : GAAAGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAAC : 262883 34 : roLeuGlyIleTyrTyrPheIleTyrAsnGlnAlaAsnLysPheGluLysIleLeuSe : 52 ||:!!||| !!:: :!:! ! !..! !:::!:!.!.|||::!|||:!!!! roIleGlyAlaTrpPro---LeuSerAlaSerIleSerArgMetGluArgIleIleTr 262884 : CGATCGGTGCATGGCCA---CTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTG : 262937 53 : rIleIleLeuIleLeuIleCysPhePheIleIleGlnPheValIleValProPheGly : 71 !.!!:!!||||||:!!:!!|||!:!! !:!!|||! !! !..!:!!:!!|||! ! ! pPheLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIle 262938 : GTTTCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATA : 262994 72 : TyrTyrIleLeuPheTyrGluLysAspMetAsnThrLysIleLysPheLeuGlyProL : 91 !:!!|||:!!.!. ! ! :!!:!!.!.:!!! !|||:!::!! !!|||||||||| LeuHisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProL 262995 : CTTCATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGC : 263054 92 : euThrPheCysLeuSerAlaLeuPheLysTyrSerTyrLeuGlyIleLysSerSerGl : 110 || ! !! !!! !!.!:!!.!!!!.|||!!!!::||| !:!! ! |||!.!!! euGlyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAs 263055 : TCGGTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGA : 263111 111 : uLeuGlyHisCysIleLysHisValGluLysAspTrpLysMetLeuGlnAsnGluAsp : 129 ::!! ! !|||:!::!!||||||:!!:!!|||||| !!::!! !.. !!!: pIleGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGlu 263112 : TATACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAG : 263168 130 : HisArgValIleMetSerArgTyrValIleMetGlyArgAsnLeuIleThrLeuCysA : 149 !!!:! !|||||| !!:! !!!.!! ! |||||| !!:!! !.!!! !|||| AspGlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysA 263169 : GATCAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCG : 263228 150 : laAlaPheMetTyrThrGlyGlyLeuSerTyrHisThrIleMetProLeuLeuSer<- : 168 || !|||||| ! |||.!! !:!!!!! ! ! !:!!! !!!!! !!!! laIlePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGl 263229 : CGATCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACA : 263285 169 : ><-><->LysArgLysValGluAsnPheThrIleArgProLeuThrTyrProGlyTyr : 184 :!! ! !|||!.! ! !:!!||| !||| !!! !|||! !||| nValIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyr 263286 : GGTGATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTAC : 263342 185 : GluAlaPheLeuAsnIleGlnLysSerProThrTyrGluIleIleTyrCysMetHisC : 204 :!!! !.!!:!! :!!.!.! !!:!|||||| !!||||||.!! !..!! !!!.! LysGluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnP 263343 : AAAGAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAAT : 263402 205 : ysIleTyrValIleValValGlyAsnIleThrMetAlaAlaTyrSerLeuThrThrIl : 223 !:!:! ! !.!!:!!||| ! ! !|||:!:!.!|||!:!.!!:!!|||.!!:! heLeuSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaVa 263403 : TTCTGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGT : 263459 224 : ePheIleThrHisAlaCysGlyGlnIleLysIleGlnMetLeuArgLeuGluAsnLeu : 242 :||| ! !|||||||||||||||:!:!!.:!: !|||! ! !!:!! !.!.!!! lPheAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPhe 263460 : GTTCGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTC : 263516 243 : LysAsnGluLysLysValLeuGluThrGlyIleGlu<->SerHisLeuAlaValValV : 261 !|||:!!...!:!! ! !.!.! !..!:!! ! !!!.!.:!!!.!|||:!!| ValAsnGlnSerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleV 263517 : GTGAACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCG : 263576 262 : alLysAsnHisValGluIleLeuArg : 269 ||:!!:!!|||:!!..!:!!|||||| alGluHisHisLeuArgValLeuArg 263577 : TTGAACATCATCTGAGAGTTCTGAGG : 263602 vulgar: AmOr51 13 269 . KQ414889.1 262825 263602 + 256 M 25 75 G 1 0 M 128 384 G 0 9 M 87 261 G 0 3 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262826 263602 256 + . gene_id 17 ; sequence AmOr51 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262826 263602 . + . KQ414889.1 exonerate:protein2genome:local exon 262826 263602 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 262826 263602 256 + . alignment_id 17 ; Query AmOr51 ; Align 262826 14 75 ; Align 262901 40 384 ; Align 263294 168 261 ; Align 263558 255 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 217 Query range: 279 -> 402 Target range: 280022 -> 280465 280 : GluLeuPheLeuValGluValIleValSerThrLeuLeuMetCysLeuLeuGluTyrT : 299 !!:|||! !! ! !!.!.:!!:!!:!!:!!! !:!! !.!. !:!!! !..!! ! AspLeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerLeuS 280023 : GACTTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGTTGT : 280080 300 : yrCysMetValGluTrpGluThrSerAspSerAlaAlaIleLeuThrTyrValIleLe : 318 !.!. !||||||||| !!:!|||:!! !!.!! !!!||||||:!!!!:!! erValPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPh 280081 : CAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTT : 280137 319 : uLeuPheSerPheThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeu : 337 !|||.!.|||!!.|||||||||:!!!!!|||.!!||||||:!!||||||:!!|||! ! eLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSer 280138 : TCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCC : 280194 338 : GlyGln >>>> Target Intron 1 >>>> GlySerGluIleAlaThrAlaLe : 347 ! !||| 74 bp !!! !:!!:!!!.!..!:!! GluGln++ ++CysLeuLysValGlyValSerTh 280195 : GAACaggt.........................agTGCTTAAAAGTCGGCGTGTCAAC : 280298 348 : uTyrGluIleGluTrpTyrAsnLeuProGlyArgLysAlaArgAspIleIleLeuLeu : 366 !||| !|||!!:||||||..!|||||||||!:!||||||!:!! !:!:||||||:!! rTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIle 280299 : TTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATA : 280355 367 : LeuValIleSerLysTyrProProLysLeuThrAlaGlyLysIlePheIleLeuSerM : 386 !!!!.!:!:|||!!.! ! !! !|||||||||||||||||||||.!! !||||||: PheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerL 280356 : TTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTT : 280415 387 : etAsnThrPheSerValValLeuLysSerSerValValTyrLeuAsnMet : 402 !:!:!!:!|||!!! !||| !! ! !!:!:!! !|||! !:!!:!! euSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280416 : TAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: AmOr51 279 402 . KQ414889.1 280022 280465 + 217 M 60 180 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280023 280465 217 + . gene_id 18 ; sequence AmOr51 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280023 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280023 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280023 280465 217 + . alignment_id 18 ; Query AmOr51 ; Align 280023 280 180 ; Align 280277 340 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 211 Query range: 302 -> 402 Target range: 286878 -> 287252 303 : GluTrpGluThrSerAspSerAlaAlaIleLeuThrTyrValIleLeuLeuPheSerP : 322 ||||||||| !|||!!:!!! !!.!! :!!|||||| !! |||||| ! |||| GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerP 286879 : GAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTT : 286936 323 : heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln >>> : 340 |||||||||||:!!!!!|||.!!||||||:!!||||||:!!|||! !! !||| heThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286937 : TCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt... : 286992 341 : > Target Intron 1 >>>> GlySerGluIleAlaThrAlaLeuTyrGluIleG : 351 74 bp !!! !:!!:!!!.! !:!! !||| !|||! ++CysLeuLysValGlyLeuSerThrTyrMetIleA 286993 : ......................agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCG : 287097 352 : luTrpTyrAsnLeuProGlyArgLysAlaArgAspIleIleLeuLeuLeuValIleSe : 370 !:||||||..!|||||||||!:!! !|||!:!! !:!:||||||:!!!!!!.!:!:|| spTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSe 287098 : ACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTC : 287154 371 : rLysTyrProProLysLeuThrAlaGlyLysIlePheIleLeuSerMetAsnThrPhe : 389 |!!.! ! !! !|||||||||||||||||||||.!! !||||||:!:!:!!:!||| rAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPhe 287155 : GAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTC : 287211 390 : SerValValLeuLysSerSerValValTyrLeuAsnMet : 402 !!! !||| !! ! !!:!:!! !|||! !:!!:!! CysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 287212 : TGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 287252 vulgar: AmOr51 302 402 . KQ414889.1 286878 287252 + 211 M 37 111 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286879 287252 211 + . gene_id 19 ; sequence AmOr51 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286879 287252 211 + . alignment_id 19 ; Query AmOr51 ; Align 286879 303 111 ; Align 287064 340 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 207 Query range: 297 -> 407 Target range: 258249 -> 258738 298 : TyrTyrCysMetValGluTrpGluThrSerAspSerAlaAlaIleLeuThrTyrValI : 317 :::||| ... ||||||...|||...||| ::: :::||| !!! PheTyrTyrPheGlnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheM 258250 : ttttattattttcaggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTA : 258307 318 : leLeuLeuPheSerPheThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLe : 336 !::!!|||.!.|||...:::|||||||||...:::...||||||:!!||||||:!!|| etIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLe 258308 : TGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATT : 258364 337 : uLeuGlyGln >>>> Target Intron 1 >>>> GlySerGluIleAlaThrA : 346 | !! !||| 90 bp !!!.!:!!:!!!.! !! uThrGluGln++ ++CysLysLysValGlyAspV 258365 : AACAGAACAGgt.........................agTGCAAGAAAGTTGGCGACG : 258484 347 : laLeuTyrGluIleGluTrpTyrAsnLeuProGlyArgLysAlaArgAspIleIleLe : 365 .!:!!||| !! !!!:|||||| !!||||||! !!:!!:! !! !|||:!!||||| alValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLe 258485 : TGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTT : 258541 366 : uLeuLeuValIleSerLysTyrProProLysLeuThrAlaGlyLysIlePheIleLeu : 384 |:!!:!!!.! !|||!.. ! !:!!:!!||||||||||||...||| ::! uValIleAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePheHisMet 258542 : GGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatG : 258598 385 : SerMetAsnThrPheSerVal >>>> Target Intron 2 >>>> ValLeuLy : 394 |||!!: !!|||||||||! ! 69 bp |||:!!|| SerIleTyrThrPheSerAsp++ ++ValIleLy 258599 : TCCATTTACACATTCAGCGATgt.........................agGTAATAAA : 258697 395 : sSerSerValValTyrLeuAsnMetLeuArgThrIleThr : 407 |!!!||| !!!.!|||||||||:!:|||||| !:!!:!! sThrSerPheAlaTyrLeuAsnLeuLeuArgGlnValSer 258698 : AACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGTATCG : 258738 vulgar: AmOr51 297 407 . KQ414889.1 258249 258738 + 207 M 42 126 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258250 258738 207 + . gene_id 20 ; sequence AmOr51 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 258250 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258250 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258250 258738 207 + . alignment_id 20 ; Query AmOr51 ; Align 258250 298 126 ; Align 258466 340 156 ; Align 258691 392 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 338 -> 398 Target range: 297641 -> 297821 339 : GlnGlySerGluIleAlaThrAlaLeuTyrGluIleGluTrpTyrAsnLeuProGlyA : 358 |||!.!..!:!!.!!!.!!.!||| !|||.!.||||||||||||||||||||| !! GlnAlaGluLysPheGlyAsnAlaAlaTyrAsnIleGluTrpTyrAsnLeuProProA 297642 : CAGGCTGAAAAATTCGGCAATGCAGCTTATAACATCGAATGGTACAACTTACCGCCAA : 297699 359 : rgLysAlaArgAspIleIleLeuLeuLeuValIleSerLysTyrProProLysLeuTh : 377 .!!:!|||! !|||:!::!:|||:!!:!!! !|||:!!|||!:!||||||!:!||||| snArgAlaLeuAspLeuValLeuMetIleGlyIleAlaLysPheProProArgLeuTh 297700 : ACAGGGCTCTCGATCTGGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCAC : 297756 378 : rAlaGlyLysIlePheIleLeuSerMetAsnThrPheSerValValLeuLysSerSer : 396 |...|||||||||||| :::|||!!:||||||||||||!.!|||! !!::...||| rGlyGlyLysIlePheAspIleSerIleAsnThrPheSerAlaValArgArgGlnSer 297757 : AggtggaaaaatattcgatatatCGATAAACACGTTCAGTGCCGTACGTAgacaaagt : 297813 397 : ValVal : 398 :::::: LeuIle 297814 : ttaatt : 297821 vulgar: AmOr51 338 398 . KQ414889.1 297641 297821 + 174 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297642 297821 174 + . gene_id 21 ; sequence AmOr51 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297642 297821 . + . KQ414889.1 exonerate:protein2genome:local exon 297642 297821 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297642 297821 174 + . alignment_id 21 ; Query AmOr51 ; Align 297642 339 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 338 -> 403 Target range: 254271 -> 254555 339 : GlnGlySerGluIleAlaThrAlaLeuTyrGluIleGluTrpTyrAsnLeuProGlyA : 358 ||| !!! !:!!:!!!.! !!.!:!!||| !! !!!:|||||| !!|||||| !| GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 359 : rgLysAlaArgAspIleIleLeuLeuLeuValIleSerLysTyrProProLysLeuTh : 377 ||!:! !! !|||:!!||||||:!!:!!..! !|||!!. ! !:!!:!!|| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 378 : rAlaGlyLysIlePheIleLeuSerMetAsnThrPheSerVal >>>> Target I : 392 |||||||||||||||| :::|||:!: !!||||||.!!! ! 89 rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt............. : 254433 393 : ntron 1 >>>> ValLeuLysSerSerValValTyrLeuAsnMetLeu : 403 bp |||:!!|||!!!.!! !!!.!||||||||||||||| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeu 254434 : ............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTT : 254555 vulgar: AmOr51 338 403 . KQ414889.1 254271 254555 + 131 M 53 159 5 0 2 I 0 85 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254555 131 + . gene_id 22 ; sequence AmOr51 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254272 254430 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254430 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254431 254432 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254431 254519 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254518 254519 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254520 254555 . + . KQ414889.1 exonerate:protein2genome:local exon 254520 254555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254555 131 + . alignment_id 22 ; Query AmOr51 ; Align 254272 339 159 ; Align 254520 392 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 338 -> 407 Target range: 230244 -> 230518 339 : GlnGlySerGluIleAlaThrAlaLeuTyrGluIleGluTrpTyrAsnLeuProGlyA : 358 ||| !!!!!:!!:!!!.! ! !! !||| !||||||||||||...||| !!|||! GlnCysArgLysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyA 230245 : CAGTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAA : 230302 359 : rgLysAlaArgAspIleIleLeuLeuLeuValIleSerLysTyrProProLysLeuTh : 377 .!||| !! ! ! !||||||:!!:!!!.!!!:|||!!.! ! !! !!|||!!!|| snLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheTh 230303 : ACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTAC : 230359 378 : rAlaGlyLysIlePheIleLeuSerMetAsnThrPheSerVal >>>> Target I : 392 |||||||!!.!!: !! !||||||:!:||||||||||||! ! 67 rAlaGlyAsnMetValGluLeuSerValAsnThrPheSerAsp++ 230360 : AGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGACgt............. : 230406 393 : ntron 1 >>>> ValLeuLysSerSerValValTyrLeuAsnMetLeuArgThrIl : 406 bp |||:!!|||!!!|||:!!! !!:!||||||||||||||||||:! ++ValValLysThrSerMetGlyPheLeuAsnMetLeuArgThrLe 230407 : ............agGTCGTTAAAACGTCCATGGGTTTCTTAAACATGCTACGAACACT : 230513 407 : eThr : 407 :||| uThr 230514 : GACG : 230518 vulgar: AmOr51 338 407 . KQ414889.1 230244 230518 + 128 M 53 159 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230245 230518 128 + . gene_id 23 ; sequence AmOr51 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 230245 230403 . + . KQ414889.1 exonerate:protein2genome:local exon 230245 230403 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 230404 230405 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 230404 230470 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 230469 230470 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230471 230518 . + . KQ414889.1 exonerate:protein2genome:local exon 230471 230518 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230245 230518 128 + . alignment_id 23 ; Query AmOr51 ; Align 230245 339 159 ; Align 230471 392 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 338 -> 404 Target range: 264723 -> 265001 339 : GlnGlySerGluIleAlaThrAlaLeuTyrGluIleGluTrpTyrAsnLeuProGlyA : 358 ||| !!!.!:!!:!!!.! !!.!:!!||| ! .!.|||||| !!|||||| !! GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 359 : rgLysAlaArgAspIleIleLeuLeuLeuValIleSerLysTyrProProLysLeuTh : 377 :! ! !! !|||:!:||||||:!!:!!:!!! !|||!.. ! !|||!!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 378 : rAlaGlyLysIlePheIleLeuSerMetAsnThrPheSerVal >>>> Target I : 392 |||||||||||||.!! !:!!|||||| !!|||||||||! ! 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 393 : ntron 1 >>>> ValLeuLysSerSerValValTyrLeuAsnMetLeuArg : 404 bp |||:!!||||||||| !!..!|||||||||:!:|||||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArg 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGC : 265001 vulgar: AmOr51 338 404 . KQ414889.1 264723 265001 + 126 M 53 159 5 0 2 I 0 76 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265001 126 + . gene_id 24 ; sequence AmOr51 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265001 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265001 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265001 126 + . alignment_id 24 ; Query AmOr51 ; Align 264724 339 159 ; Align 264963 392 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 298 -> 339 Target range: 210651 -> 210774 299 : TyrCysMetValGluTrpGluThrSerAspSerAlaAlaIleLeuThrTyrValIleL : 318 !:! !:!: !||||||!!::!!!.!||| !! !::!! !|||||||||:!!:!!| PheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValL 210652 : TTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTAC : 210709 319 : euLeuPheSerPheThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLe : 337 ||||| !||| !!||||||||||||!!!||||||||||||:!!||||||:!!||| euLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAl 210710 : TCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGC : 210766 338 : uGlyGln : 339 !! !||| aGluGln 210767 : TGAACAg : 210774 vulgar: AmOr51 298 339 . KQ414889.1 210651 210774 + 121 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210652 210774 121 + . gene_id 25 ; sequence AmOr51 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 210652 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210652 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210652 210774 121 + . alignment_id 25 ; Query AmOr51 ; Align 210652 299 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 302 -> 407 Target range: 277371 -> 277842 303 : GluTrpGluThrSerAspSerAlaAlaIleLeuThrTyrValIleLeuLeuPheSerP : 322 ||||||... !|||||| ! !.!!!!: !|||:!! !!!!::!!|||.!.|||. GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 323 : heThrPheAsnIleLeuIlePheCys{T} >>>> Target Intron 1 >>>> : 331 !. |||||||||... ! ! |||{|} 72 bp etCysPheAsnIlePheThrValCys{T}-+ ++ 277430 : TgtgtttcaacatttttacAGTATGC{T}at.........................ag : 277527 332 : {yr}ValGlyGluLeuLeuLeuGlyGlnGlySerGluIleAlaThrAlaLeuTyrGlu : 349 {||}..! !..!! ! !!!! !!||| !!!.!:!!:!!!.! !!.!:!!||| ! {yr}ThrHisArg***AsnPheArgGlnCysLysLysValGlyGluValValTyrMet 277528 : {AT}ACTCACCGATGAAATTTCCGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATG : 277582 350 : IleGluTrpTyrAsnLeuProGlyArgLysAlaArgAspIleIleLeuLeuLeuValI : 369 ! .!.|||||| !!||||||! !!:! ! !! !:!!:!::!!|||:!!:!! !! ThrAsnTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerA 277583 : ACGAATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAA : 277642 370 : leSerLysTyrProProLysLeuThrAlaGlyLysIlePheIleLeuSerMetAsnTh : 388 !|||!.. |||:::||||||||||||:::... :::|||:!! !!|| rgSerSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrTh 277643 : GATCTAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACAC : 277699 389 : rPheSerVal >>>> Target Intron 2 >>>> ValLeuLysSerSerValV : 398 ||||.!!! ! 84 bp |||:!!|||!!!!!! !!. rPheGlyAsp++ ++ValIleLysThrThrPheA 277700 : GTTCGGCGATgt.........................agGTAATAAAAACCACTTTCg : 277813 399 : alTyrLeuAsnMetLeuArgThrIleThr : 407 ..|||||||||:::|||||| !! ||| laTyrLeuAsnIleLeuArgGlnThrThr 277814 : cgtatttaaatattctacgCCAAACGACG : 277842 vulgar: AmOr51 302 407 . KQ414889.1 277371 277842 + 119 M 28 84 S 0 1 5 0 2 I 0 68 3 0 2 S 1 2 M 60 180 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277842 119 + . gene_id 26 ; sequence AmOr51 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277456 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277457 277458 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 277457 277528 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277527 277528 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277529 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277529 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277842 119 + . alignment_id 26 ; Query AmOr51 ; Align 277372 303 84 ; Align 277531 332 180 ; Align 277795 392 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 298 -> 337 Target range: 305088 -> 305205 299 : TyrCysMetValGluTrpGluThrSerAspSerAlaAlaIleLeuThrTyrValIleL : 318 ||| !!!:||||||!:!|||:!!!!!!.!::!:!! !||||||..!:!:| TyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValL 305089 : tatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGT : 305146 319 : euLeuPheSerPheThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLe : 337 |||||.!.||| ! ||||||||||||!!!|||!!.||||||:!!||||||:!!|||:! euLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMe 305147 : TACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTAT : 305203 338 : u : 337 ! t 305204 : G : 305205 vulgar: AmOr51 298 337 . KQ414889.1 305088 305205 + 116 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305089 305205 116 + . gene_id 27 ; sequence AmOr51 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305089 305205 . + . KQ414889.1 exonerate:protein2genome:local exon 305089 305205 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305089 305205 116 + . alignment_id 27 ; Query AmOr51 ; Align 305089 299 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 302 -> 339 Target range: 224323 -> 224434 303 : GluTrpGluThrSerAspSerAlaAlaIleLeuThrTyrValIleLeuLeuPheSerP : 322 ||||||...:::||| !!! !.!!::! :!!|||||| !!|||||||||.!.|||. GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 323 : heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln : 339 ..||||||||||||...||||||||||||::!|||||||||:!! !! !||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcag : 224434 vulgar: AmOr51 302 339 . KQ414889.1 224323 224434 + 114 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224434 114 + . gene_id 28 ; sequence AmOr51 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224434 114 + . alignment_id 28 ; Query AmOr51 ; Align 224324 303 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 294 -> 339 Target range: 214605 -> 214740 295 : LeuLeuGluTyrTyrCysMetValGluTrpGluThrSerAspSerAlaAlaIleLeuT : 314 :::::::::::: ::: ||||||.!.:!!!:!:!!! !.!!.!!! !:!!| IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 315 : hrTyrValIleLeuLeuPheSerPheThrPheAsnIleLeuIlePheCysTyrValGl : 333 ||||||||:!:|||! !.!!|||...||||||||||||...||||||||||||:!!|| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 334 : yGluLeuLeuLeuGlyGln : 339 |||||||:!!! !! !||| yGluLeuValSerGluGln 214721 : CGAGCTTGTGTCTGAACAG : 214740 vulgar: AmOr51 294 339 . KQ414889.1 214605 214740 + 113 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 214740 113 + . gene_id 29 ; sequence AmOr51 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 214740 113 + . alignment_id 29 ; Query AmOr51 ; Align 214606 295 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 302 -> 348 Target range: 206050 -> 206188 303 : GluTrpGluThrSerAspSerAlaAlaIleLeuThrTyrValIleLeuLeuPheSerP : 322 |||||||||!.!!:!:!!!!!.!!|||:!!:!!..!|||:!!! |||! !.!.|||! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 323 : heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGlnGlySe : 341 !|||||| !:!!!!!|||.!.||||||:!!|||:!!||||||:!!! !|||! ! ! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGlnValAr 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAGTGCG : 206165 342 : rGluIleAlaThrAlaLeuTyr : 348 !!!: !!.!:!! ! !||| gAspTyrValSerMetLysTyr 206166 : TGATTACGTATCAATGAAGTAC : 206188 vulgar: AmOr51 302 348 . KQ414889.1 206050 206188 + 104 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206188 104 + . gene_id 30 ; sequence AmOr51 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206051 206188 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206188 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206188 104 + . alignment_id 30 ; Query AmOr51 ; Align 206051 303 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 302 -> 336 Target range: 272836 -> 272938 303 : GluTrpGluThrSerAspSerAlaAlaIleLeuThrTyrValIleLeuLeuPheSerP : 322 |||||| ! !|||! ! !::!:!! !|||||| !!!!::!!|||.!.|||. GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 323 : heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeu : 336 !.||||||||||||...||| ||||||:!!||||||:!!||| etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeu 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTA : 272938 vulgar: AmOr51 302 336 . KQ414889.1 272836 272938 + 100 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 272938 100 + . gene_id 31 ; sequence AmOr51 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272837 272938 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272938 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 272938 100 + . alignment_id 31 ; Query AmOr51 ; Align 272837 303 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 295 -> 403 Target range: 807257 -> 807581 296 : GlyTyrTyrIleLeuThrGluTrpAlaAspHisAspIleArgAsnLeuThrThrTyrP : 315 |||!:! !.!!|||..!! !::! ! |||! ! ! ! !! ! !| GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 316 : heMetIleLeuThrSerMetSerPheAsnIlePheIleIleCysTyrIleGlyAspIl : 334 ||:!::!::!!..!!!!:!! !.!!.!.:!:!:!:!! !..!||| |||:!!! heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 335 : eLeuMetGluGlnCysArgLysValGlyGluValLeuTyrMetThrAsnTrpTyrTyr : 353 !||| !..!!:! !..!:!!:!!!.!:!!!.! !||| :!! !|||||| ! rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 354 : LeuProTyrLysAspIleLeuAspLeuIleLeuIleIleSerArgSerAsnAlaValI : 373 ! !! ! ! ! ! !||||||:!!||||||||| !|||.!!|||:!! ! CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 374 : leLysIleThrAlaGlyLysLeuThrAsnMetSerIleTyrThrPheGlyAsnValMe : 392 !:::|||||||||||||||!!!..! |||!:!:!!!:!|||||| !.!.:!!:! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 393 : tLysThrThrPheThrTyrPheAsnLeuLeuArg : 403 !|||.!!:!! !:!!|||.!.::!:!!:!!!:! uLysAlaSerGlySerTyrLeuSerValMetLys 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: AmOr31 295 403 . KQ414940.1 807257 807581 + 142 M 108 324 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807581 142 + . gene_id 1 ; sequence AmOr31 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807581 142 + . alignment_id 1 ; Query AmOr31 ; Align 807258 296 324 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 295 -> 403 Target range: 807257 -> 807581 296 : SerTyrTyrPheLeuAlaGluTrpSerGluArgAsnIleGlnAsnLeuThrIleTyrV : 315 .!!!:! !||||||!.!! !||| !!:!:!!! ! ! !! ! GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 316 : alMetValAlaLeuSerMetSerPheAsnIleLeuLeuValCysCysIleGlyGluIl : 334 !!:!::!! !:!!!!!:!! !.!!.!.:!:! !||| !..!! ! |||.!.! heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 335 : eLeuArgGluGlnCysLysLysValGlyAspMetValTyrMetThrAsnTrpTyrGln : 353 !|||..!..!!:! !:!!:!!:!!!.!.!. !.!||| :!! !||||||!:: rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 354 : LeuProAspLysAspIleLeuAsnLeuIleMetIleIleSerArgSerSerValGluV : 373 ! !! !! ! ! ! !:!!|||:!!:!!|||||| !|||.!!!:! ! CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 374 : alLysIleThrAlaGlyLysIleIleThrMetSerIleTyrThrPheGlyAsnIleVa : 392 !:::|||||||||||||||.!!:!! !!|||!:!:!!!:!|||||| !.!.|||:! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 393 : lLysThrValPheAlaTyrLeuAsnMetLeuArg : 403 !|||.!! ! !:!!||||||::!:!::!!!:! uLysAlaSerGlySerTyrLeuSerValMetLys 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: AmOr50 295 403 . KQ414940.1 807257 807581 + 117 M 108 324 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807581 117 + . gene_id 1 ; sequence AmOr50 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807581 117 + . alignment_id 1 ; Query AmOr50 ; Align 807258 296 324 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr62 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 1337 Query range: 3 -> 398 Target range: 805808 -> 807593 4 : ArgLysGluSerIleAspGluArgIleArgAsnPheMetValGlnLysMetValLeuL : 23 ..!:!!.!.||| !!!::!!! ! !|||.!.|||:!:||||||:!!! !||||||! GluGluAsnSerGlyGluLysIleAlaArgGluPheLeuValGlnGluThrValLeuA 805809 : GAGGAGAATTCGGGCGAGAAGATCGCTCGCGAGTTCCTCGTGCAGGAAACGGTGTTGA : 805866 24 : ysIleIleGlyIleTrpProThrAsn<->GlyGluArgSerPhePheGlyArgTrpIl : 41 :!||||||||||||||||||!:!!:! ..!.!. !:!!! !.!!|||||||||! rgIleIleGlyIleTrpProSerSerValAsnAsnPheAlaSerIleGlyArgTrpTh 805867 : GAATAATCGGGATTTGGCCGAGCAGCGTTAACAATTTCGCGTCCATCGGTCGATGGAC : 805923 42 : ePheAlaValThrThrGln >>>> Target Intron 1 >>>> IleGlyIleI : 51 ||||||:!! !|||!!. 72 bp |||.!!! !| rPheAlaIleLeuThrHis++ ++IleSerThrI 805924 : GTTCGCCATCTTGACGCATgt.........................agATCAGTACTA : 806025 52 : leTyrIleLeuSerLeuGluIleTyrArgHisCysLeuAspIleAspAspThrMetAs : 70 |||||! !||||||||||||:!!||||||||||||||||||:!!|||||||||||||| leTyrSerLeuSerLeuGluValTyrArgHisCysLeuAspLeuAspAspThrMetAs 806026 : TCTACAGCCTGTCTCTCGAAGTCTATCGTCATTGTCTGGACCTCGACGACACGATGGA : 806082 71 : pAlaPheValMetAspLeuSerAlaValIleSerLeuAlaLysLeuPheIleLeuArg : 89 ||||||||||||||||||||||:!!||||||||||||:!!||||||.!!:!!|||||| pAlaPheValMetAspLeuSerSerValIleSerLeuSerLysLeuLeuValLeuArg 806083 : CGCGTTCGTCATGGATCTGTCGTCGGTGATCAGTCTGTCCAAGCTGCTCGTTTTACGG : 806139 90 : LeuAsnSerLysHisAlaTrpValLeuIleAsnSerValValGluAspTrpSerAlaV : 109 :!!!!.|||||||||.!!!::!.!|||:!!:!!|||:!!|||:!!||||||!!! !| MetLysSerLysHisThrTyrAlaLeuValAspSerIleValLysAspTrpThrAsnV 806140 : ATGAAATCGAAACACACTTACGCTCTCGTCGATTCGATCGTCAAAGACTGGACGAACG : 806199 110 : alHisAspSerArgHisGluTyrIleMetThrGluTyrLeuLysLysGlyArgIleVa : 128 || !! !!|||||||||||| !|||||||||||||||!!!!!.|||||||||||||| alAspHisSerArgHisGluArgIleMetThrGluTyrPheAsnLysGlyArgIleVa 806200 : TCGATCATTCCCGCCACGAACGCATCATGACGGAGTACTTCAACAAAGGAAGAATCGT : 806256 129 : lSerLeuMetIleLeuTyrLeuGlyTyrAlaSerGlyPheSerPheIleValLysAla : 147 |||||||! !|||||||||||||||||||||||||||.!.||||||:!!:!!|||||| lSerLeuThrIleLeuTyrLeuGlyTyrAlaSerGlyLeuSerPheValLeuLysAla 806257 : TTCGTTGACGATACTCTACCTTGGATACGCCTCTGGACTGTCTTTCGTTCTCAAAGCC : 806313 148 : LeuProPheGlyAspIleLeuProPheGln >>>> Target Intron 2 >>>> : 158 ||||||!!. !!:!!|||||||||||| 82 bp LeuProLeu---HisLeuLeuProPheGln++ + 806314 : CTGCCTTTG---CACCTTCTACCCTTCCAGgt.........................a : 806423 159 : MetPheGlnAsnSerArgAsnSerSerMetAsnProAspIleProLeuLysLeuAsn : 176 ! !.!!!!.!:!!!! !||||||!!!:!!||| !!:!! ! !! !:::|||||| +LysLeuHisSerTrpAlaAsnSerThrValAsnThrAsnAspThrAlaArgLeuAsn 806424 : gAAGCTCCACAGTTGGGCGAATTCAACGGTGAACACGAACGATACAGCGagattgaat : 806479 177 : TyrPheLeuAlaSerTyrCysValPheGlySerLeuProLeuLeuHisHisValCysV : 196 ||||||||||||!!!:!!|||||||||||| !!|||||||||! !||||||||||||| TyrPheLeuAlaThrHisCysValPheGlyProLeuProLeuGlnHisHisValCysV 806480 : tatttcttgGCCACGCACTGCGTGTTCGGCCCTTTACCGTTGCAGCATCACGTCTGCG : 806539 197 : alLeuLeuLeuGlnGlyIlePheIlePheValAsnAlaValAlaHisCysGlyAsnAs : 215 |||||||||||||||||!!: !|||||| !!|||||||||||||||||||||||||| alLeuLeuLeuGlnGlyMetHisIlePhePheAsnAlaValAlaHisCysGlyAsnAs 806540 : TGTTACTGCTGCAAGGGATGCACATTTTCTTCAACGCCGTGGCTCACTGCGGCAACGA : 806596 216 : pGlyLeuPhePheSerLeuThrMetHisLeuCysGlyGlnPheGluIleLeuLysThr : 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||! ! pGlyLeuPhePheSerLeuThrMetHisLeuCysGlyGlnPheGluIleLeuLysMet 806597 : CGGCCTCTTCTTCAGCCTGACGATGCATCTGTGCGGTCAGTTTGAAATTCTGAAGATG : 806653 235 : ArgIleAlaLysIleGluPhe<-><-><->ValAspArgArgLysIleGlyProLeuV : 251 !.!:!:|||:!!||||||||| !.! !|||!:!::!|||||| !|||| AsnLeuAlaGluIleGluPheGluAlaIleAlaCysArgLysArgIleGlyValLeuV 806654 : AATCTGGCGGAGATCGAGTTCGAGGCGATCGCTTGTCGGAAGCGAATCGGCGTTCTCG : 806713 252 : alLysArgHisCysGlnLeuAlaValLeuValAsnAspLeuGluGlnThrPheAsnMe : 270 ||||||||||||||:!!||||||||||||..!|||||||||||||||!:!|||!:!|| alLysArgHisCysLysLeuAlaValLeuThrAsnAspLeuGluGlnSerPheSerMe 806714 : TGAAACGACACTGCAAACTGGCGGTGTTGACCAACGATCTCGAGCAGAGCTTCAGTAT : 806770 271 : tIleIlePheValGlnLeuLeuMetSerAlaLeuLeuIleCysValGlu{G} >>>> : 287 |||||||.!.|||||||||:!!|||||||||||||||||||||||||||{|} tIleIleLeuValGlnLeuMetMetSerAlaLeuLeuIleCysValGlu{G}++ 806771 : GATTATTCTGGTGCAACTCATGATGAGTGCGTTGCTAATTTGCGTAGAA{G}gt.... : 806824 288 : Target Intron 3 >>>> {ly}PheValPheLeuValCysLeuSerThrLysA : 298 437 bp {||}|||||||||||||||..!||||||||||||| ++{ly}PheValPheLeuValAlaLeuSerThrLysA 806825 : .....................ag{GT}TTCGTCTTCCTGGTCGCTCTGAGCACGAAGG : 807291 299 : spAsnIleGlyAlaLeuLysSerMetValLeuMetValThrLeuLeuIleGlnLeuTy : 317 |||||:!!!.!||||||!:!|||.!.|||||||||||||||||||||||||||||||| spAsnValAlaAlaLeuArgSerPheValLeuMetValThrLeuLeuIleGlnLeuTy 807292 : ACAACGTTGCAGCATTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTA : 807348 318 : rLeuTyrAlaTyrAlaGlyAspAlaLeuGluSerArgThrGluGluIleAlaGlnAla : 336 |||||||||||||||||||:!!.!!||||||||||||||||||||||||||||||||| rLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluIleAlaGlnAla 807349 : CCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCC : 807405 337 : AlaPheHisSerPheTrpTyrGlnSerArgGlyArgThrAlaArgAspLeuIleLeuI : 356 |||!:! !!|||.!!||||||!::!!!!.!|||!.!.!!||||||||||||:!!|||| AlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuI 807406 : GCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGA : 807465 357 : leIleCysArgGlyAsnSerSerTyrHisValThrAlaGlyLysPheValPheMetAs : 375 ||||| !|||||||||||| !!|||!.!:!!|||||||||||||||||| ||||| leIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheValProMetAs 807466 : TCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAA : 807522 376 : nIlePheThrPheLysGluIleLeuLysSerSerAlaSerTyrLeuSerValLeuLys : 394 |:!!||||||||||||||||||||||||:!!|||!.!|||||||||||||||:!!||| nLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSerValMetLys 807523 : TCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807579 395 : ValMetMetAsp : 398 |||||||||||| ValMetMetAsp 807580 : GTAATGATGGAC : 807593 vulgar: AmOr62 3 398 . KQ414940.1 805808 807593 + 1337 M 28 84 G 0 3 M 16 48 5 0 2 I 0 68 3 0 2 M 103 309 G 1 0 M 6 18 5 0 2 I 0 78 3 0 2 M 84 252 G 0 9 M 45 135 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 805809 807593 1337 + . gene_id 1 ; sequence AmOr62 ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 805809 805943 . + . KQ414940.1 exonerate:protein2genome:local exon 805809 805943 . + . insertions 3 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 805944 805945 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 805944 806015 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 806014 806015 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 806016 806342 . + . KQ414940.1 exonerate:protein2genome:local exon 806016 806342 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local splice5 806343 806344 . + . intron_id 2 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806343 806424 . + . intron_id 2 KQ414940.1 exonerate:protein2genome:local splice3 806423 806424 . + . intron_id 1 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 806425 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806425 806821 . + . insertions 9 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 3 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807258 . + . intron_id 3 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 2 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 805809 807593 1337 + . alignment_id 1 ; Query AmOr62 ; Align 805809 4 84 ; Align 805896 32 48 ; Align 806016 48 309 ; Align 806325 152 18 ; Align 806425 158 252 ; Align 806686 242 135 ; Align 807261 288 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 300 -> 411 Target range: 807260 -> 807593 301 : TyrTyrCysIleMetGluTrpSerValGlyAspThrIleThrLeuLeuThrPhePheT : 320 !:! !! !:!::!:! !|||..! !|||!.!:!!.!! !|||! ! !|||. PheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheV 807261 : TTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCG : 807318 321 : hrLeuLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLe : 339 .!|||:!!:!:!!!!!. !.!!.!.:!:!:!:!!!:!..!||| |||.!.! !|| alLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLe 807319 : TTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACT : 807375 340 : uThrGluGlnCysSerGlnIleGlyThrValSerTyrGluIleAspTrpTyrLysLeu : 358 | !..!!:! !..!:!!|||!.! !!.!:!!|||!!: ! !||||||:::! ! uGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCys 807376 : CGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGC : 807432 359 : SerProLysGluAlaTyrAspLeuIleLeuLeuIleSerIleSerGlnHisProProL : 378 ! ! ! ! !||| ||||||:!!|||:!!||| ! !.!!.!. ||| !: HisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrA 807433 : CACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATC : 807492 379 : ysLeuThrAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSerThrValAlaLy : 397 :::!!||||||||||||.!!:!! !:!!!:!||| !||||||!.! !:!! !|| rgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLy 807493 : GTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAA : 807549 398 : sThrSerValValTyrLeuAsnLeuLeuArgThrValThrAsp : 411 |.!!|||! ! !||||||::!:!!:!!!:!..!:!!! !||| sAlaSerGlySerTyrLeuSerValMetLysValMetMetAsp 807550 : AGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: AmOr53 300 411 . KQ414940.1 807260 807593 + 165 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807261 807593 165 + . gene_id 1 ; sequence AmOr53 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807261 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807261 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807261 807593 165 + . alignment_id 1 ; Query AmOr53 ; Align 807261 301 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 168 Query range: 297 -> 408 Target range: 807260 -> 807593 298 : TyrTyrCysMetValGluTrpGluThrSerAspSerAlaAlaIleLeuThrTyrValI : 317 !:! !! !:!!|||! !...|||!.!|||!:!!.!||| !|||! ! ! !!: PheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheV 807261 : TTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCG : 807318 318 : leLeuLeuPheSerPheThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLe : 336 !!|||:!! ! !!!!!. !.!!.!.:!:! !:!!!:!..!|||!.!|||.!. !|| alLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLe 807319 : TTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACT : 807375 337 : uLeuGlyGlnGlySerGluIleAlaThrAlaLeuTyrGluIleGluTrpTyrAsnLeu : 355 | !..!!:! !..!||||||||| !||| !|||!!: ! ||||||..!! ! uGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCys 807376 : CGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGC : 807432 356 : ProGlyArgLysAlaArgAspIleIleLeuLeuLeuValIleSerLysTyrProProL : 375 ! !|||!.! !|||||||||:!!:!!|||:!!:!! ! !.!!!!.! ||| !: HisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrA 807433 : CACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATC : 807492 376 : ysLeuThrAlaGlyLysIlePheIleLeuSerMetAsnThrPheSerValValLeuLy : 394 :::!!||||||||||||.!! !! :!!!:!:!: !||||||!.!! !:!!||||| rgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLy 807493 : GTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAA : 807549 395 : sSerSerValValTyrLeuAsnMetLeuArgThrIleThrGlu : 408 |:!!|||! ! !||||||::!:!::!!!:!..!!!:! !!!: sAlaSerGlySerTyrLeuSerValMetLysValMetMetAsp 807550 : AGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: AmOr51 297 408 . KQ414940.1 807260 807593 + 168 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807261 807593 168 + . gene_id 1 ; sequence AmOr51 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807261 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807261 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807261 807593 168 + . alignment_id 1 ; Query AmOr51 ; Align 807261 298 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 318 -> 406 Target range: 807317 -> 807581 319 : MetLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluArgL : 338 :!:|||:!!:!:!!!||| !.!!.!.:!:!:!:!!! !..!||| |||.!.! !| ValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrL 807318 : GTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACAC : 807375 339 : euMetGluLysSerSerSerIleGlyLeuSerCysPheMetIleAspTrpPheGlnLe : 357 || !..!::!!!!..!..!|||!.!! !:!!..!!:! ! !|||!:!!::! euGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCy 807376 : TCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTG : 807432 358 : uProThrLysThrIleHisAspLeuIleLeuIleIleAlaMetSerAsnAsnProIle : 376 !! ! ! ! .!! !...||||||:!!||||||||| ! .!!|||:::||| ! sHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyr 807433 : CCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTAT : 807489 377 : LysIleSerAlaGlySerIleValAspLeuSerLeuTyrThrPheGlyGlyValLeuL : 396 :::|||!!!||||||!.!.!!||| :!!!:!|||!:!|||||| !! !:!!|||| ArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuL 807490 : CGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGA : 807549 397 : ysThrSerLeuValTyrLeuSerPheLeuArg : 406 ||.!!||| ! !||||||||| ! :!!!:! ysAlaSerGlySerTyrLeuSerValMetLys 807550 : AAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: AmOr61 318 406 . KQ414940.1 807317 807581 + 140 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807318 807581 140 + . gene_id 1 ; sequence AmOr61 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807318 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807318 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807318 807581 140 + . alignment_id 1 ; Query AmOr61 ; Align 807318 319 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 301 -> 411 Target range: 807257 -> 807587 302 : GlyTyrPheLeuLeuLysGluTrpGluGlnSerGluThrIleGlyIleLeuThrTyrC : 321 |||!:! !!!!!||| ! !... !!.!!!:!.!:!!!.! !|||! ! !! GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 322 : ysIleLeuLeuIleSerPheIlePheAsnIlePheIleLeuCysTyrIleGlyGluIl : 340 !:!!|||:!!:!:!!!!!.:!:.!!.!.:!:!:!:!!! !..!||| |||.!.! heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 341 : eLeuSerGluGluCysLysSerIleGlyLeuSerAlaTyrMetIleAspTrpHisArg : 359 !|||..!..!..! !:!!..!|||!.!! !:!!|||||| ! !|||:!!||| rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 360 : LeuProGlyLysLysAlaLeuSerLeuIleLeuIleSerAlaAlaSerAsnSerSerT : 379 ! !! !||| ! !||| !..!|||:!!||||||! ! ! !.!!|||||| !! CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 380 : hrLysLeuThrAlaGlyLysLeuValGluLeuSerLeuSerSerPheCysSerValLe : 398 !::::!!||||||||||||!!!||| !:!!!:!|||! !!!!||| ..!:!!|| yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 399 : uLysSerSerLeuAlaTyrLeuSerLeuLeuArgThrLeu : 411 ||||:!!||| !:!!|||||||||:!!:!!!:!..!:!! uLysAlaSerGlySerTyrLeuSerValMetLysValMet 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: AmOr35 301 411 . KQ414940.1 807257 807587 + 159 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807587 159 + . gene_id 1 ; sequence AmOr35 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807587 159 + . alignment_id 1 ; Query AmOr35 ; Align 807258 302 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 296 -> 406 Target range: 807257 -> 807587 297 : GlyTyrTyrIleLeuThrAlaTrpSerValHisAspIleGlnAsnMetValValPheL : 316 |||!:! !.!!|||..!||| !|||..! ! |||! ! :!! ! !! GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 317 : euValIleLeuLeuSerMetIlePheAsnIlePheIleIleCysTyrIleGlyAspIl : 335 !!|||:!::!!:!!!!!:!!:!:.!!.!.:!:!:!:!! !..!||| |||:!!! heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 336 : eLeuThrGluGlnCysLysMetIleGlyGluAlaValTyrMetThrAsnTrpTyrTyr : 354 !||| !..!!:! !:!! |||!.!:!!|||!.!||| :!! !|||||| ! rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 355 : LeuProGlyLysAspIleLeuAsnLeuValGlnIleIleLeuArgSerSerMetValI : 374 ! !! !||| ! ! ! !:!!|||:!! !||||||! !|||.!!!:! ! ! CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 375 : leLysIleThrAlaGlyLysLeuValHisMetSerIleTyrThrPheGlyAsnValMe : 393 !:::|||||||||||||||!!!|||! |||!:!:!!!:!|||||| !.!.:!!:! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 394 : tLysThrAlaPheAlaTyrLeuAsnLeuLeuArgGlnMet : 406 !|||.!!:!! !:!!||||||::!:!!:!!!:! !||| uLysAlaSerGlySerTyrLeuSerValMetLysValMet 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: AmOr32 296 406 . KQ414940.1 807257 807587 + 158 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807587 158 + . gene_id 1 ; sequence AmOr32 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807587 158 + . alignment_id 1 ; Query AmOr32 ; Align 807258 297 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 228 Query range: 2 -> 154 Target range: 504 -> 48 3 : LeuThrThrLeuAsnLysAsnAsnCysLysValArgAsnLeuLysTyrLysGluAspIleAlaT : 24 :!!..!|||:!!!:!!!.:!!!!. ! !|||! !.!.:!!!!. ! ! ..!! !! !| ValValThrMetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspT 504 : GTGGTCACGATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATT : 441 25 : yrIleThrLysHisAsnLysTrpIleLeuLysSerIleGlyIleTrpProSerValLeuLysSe : 45 ||! ! !:!! |||::!||| :!!||||||||||||! !||||||..! !!! !..!!: yrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerAs 440 : ACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGAA : 378 46 : rValSerArgPheLeuProLysIleMetPheGlyPheAsnAsnPheValLeuLeuPheSerVal : 66 !:!!..!||| !:!! !!::!|||:!: !! !.!! ! !! !!.!:!!|||||||||:!! nLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIle 377 : CCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATA : 315 67 : IleProCysIleLeuTyrIleValTyrGluGluLysAsnIleMetIleLysPheLysLeuValG : 88 ||||||||| |||:!!:!!:!! |||:!! !!.!.!! ! ||| ! |||:!!:!!| IleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuG 314 : ATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCG : 249 89 : lyLeuLeuSerPheSerLeuIleAlaLeuIleLysTyrTrpThrLeuThrTyrArgLysProAr : 109 ||! !|||||| !!!!:!!.!!..!:!!|||!..||| ! !||| ! |||::: !! lyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysTh 248 : GTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAAC : 186 110 : gIleLysAspCysIleGluGlnIleTrpIleAspTrpGluGlnValGluLeuHisGluAspArg : 130 !||| ! !!! !:!!.!.!!.!!: !! !||||||..! !..! ||| ::: rIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLys 185 : CATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaa : 123 131 : LysValMetLeuLysTyrGlyGlnIleGlyArgAsnLeuThrIleIleCysAlaValPheIleT : 152 :::|||||||||||||||!.!:!!.!!.!!||| !! !.!!|||.!!||||||:!!||||||: GluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleH 122 : gaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATAC : 57 153 : yrThrGly : 154 !! !||| isGlyGly 56 : ACGGTGGT : 49 vulgar: AmOr61 2 154 . LHQN01027980.1 504 48 - 228 M 152 456 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 49 504 228 - . gene_id 1 ; sequence AmOr61 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 49 504 . - . LHQN01027980.1 exonerate:protein2genome:local exon 49 504 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 49 504 228 - . alignment_id 1 ; Query AmOr61 ; Align 505 3 456 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 198 Query range: 301 -> 400 Target range: 4590 -> 4201 302 : CysIleThrAspTrpGluLeuSerAsnThrIleSerLeuThrThrTyrThrMetLeuLeuIl : 322 |||.!! !!!:||| ! !|||:!!.!! !! !||| !||||||! !:!: !|||:! CysPhe***GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuVa 4590 : tgctTCTAGGAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGT : 4530 323 : eSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluArgLeuMetGluLys >> : 342 !:!!:!!..! ||| |||::::::|||||||||.!!!!:||||||! |||:!! lAlaValValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4529 : TGCTGTTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt.. : 4468 343 : >> Target Intron 1 >>>> SerSerSerIleGlyLeuSerCysPheMetIleAspT : 354 92 bp !!!! !!.!:!!||| ! ! !!:!|||! !|||| ++CysLeuLysValGlyGluValValTyrMetThrAspT 4467 : .......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATT : 4342 355 : rpPheGlnLeuProThrLysThrIleHisAspLeuIleLeuIleIleAlaMetSerAsnAsn : 374 ||!:! ! |||||| !!:!! !|||! !||||||||||||||||||.!! |||||| rpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnVal 4341 : GGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTG : 4282 375 : ProIleLysIleSerAlaGlySerIleValAspLeuSerLeuTyrThrPheGlyGlyValLe : 395 !:!!:!!|||!!!||||||...||| :::||||||||||||||||||! !||| ValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSe 4281 : GTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAG : 4219 396 : uLysThrSerLeuVal : 400 !:!!|||!:!|||||| rGluThrAsnLeuVal 4218 : TGAAACTAATCTTGTT : 4202 vulgar: AmOr61 301 400 . LHQN01027980.1 4590 4201 - 198 M 40 120 5 0 2 I 0 88 3 0 2 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4202 4590 198 - . gene_id 2 ; sequence AmOr61 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4590 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4590 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4202 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4202 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4202 4590 198 - . alignment_id 2 ; Query AmOr61 ; Align 4591 302 120 ; Align 4379 342 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 402 Query range: 1 -> 165 Target range: 489 -> 3 2 : ThrSerLysSerValIleSerGluGluSerPheAspSerLeuCysAspTyrSerLeuGlnLeuA : 23 !.!..!|||!!!|||:!!!!!||| !:!.!. !:!! ! !!|||||||||||||||! !| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpA 489 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGA : 426 24 : snArgTrpLeuLeuLysProIleGlyAlaTrpProSerSerSerSerSerSerLysLeuGluAr : 44 |||||||| !:!!||| !||||||.!!||||||..!! !||||||!:! |||||||| snArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerAsn------LeuGluAr 425 : ATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGAAC------CTCGAGAG : 369 45 : gIleValSerPhePheLeuIleValLeuCysTyrGlyPheIleLeuPheThrValIleProSer : 65 |! !:!!||| .!.|||! !|||:!!|||||| ! |||||||||:!!:!!||||||!!! gAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCys 368 : AAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGT : 306 66 : LeuPheHisIleValLeuGluAspGluAsnLeuHisMetLysLeuLysValPheGlyProLeuS : 87 ! !!!.|||:!!:!!|||||| ! ! !!.!!!!:!!! !|||:!!|||:!!.!!|||||||||| SerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyProLeuS 305 : TCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGA : 240 88 : erHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuGlnAsnLysGluIleGlnTy : 108 |||||||| ! .!! !! !|||!:!||||||! !|||||||||!:!..!||| |||!!.:! erHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHi 239 : GCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCA : 177 109 : rCysValGluHisMetGlnThrAspTrpLysIleValAsnArgAlaLysAspGlnGlnValMet : 129 !! !|||.!.||||||:!!|||||||||!:!! ..!...||| ::: ::::::|||||| sPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMet 176 : CTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATG : 114 130 : MetLysTyrAlaLysIleGlyArgTyrIleAlaAlaLeuCysAlaIlePheMetGlnThrGlyV : 151 :!!||||||||||||.!!.!!|||||| ||| !!!!||||||||||||!!:!!. !|||: LeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyI 113 : CTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTA : 48 152 : alLeuThrTyrCysValValThrAlaPheSerThrArgIleIle : 165 !!||| !|||||||||:!!||||||! !!!!|||! !:!!:!! leLeuGlyTyrCysValMetThrAlaSerThrThrMetValVal 47 : TACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTC : 4 vulgar: AmOr31 1 165 . LHQN01027980.1 489 3 - 402 M 38 114 G 2 0 M 124 372 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4 489 402 - . gene_id 1 ; sequence AmOr31 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4 489 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4 489 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 4 489 402 - . alignment_id 1 ; Query AmOr31 ; Align 490 2 114 ; Align 376 42 372 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 276 Query range: 301 -> 394 Target range: 4581 -> 4210 302 : GluTrpAlaAspHisAspIleArgAsnLeuThrThrTyrPheMetIleLeuThrSerMetSe : 322 ||||||.!!!!: !||| !!:!! ||| !||||||.!!:!:! !|||..!:!!:!: GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValVa 4581 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTGT : 4521 323 : rPheAsnIlePheIleIleCysTyrIleGlyAspIleLeuMetGluGln >>>> Target : 339 ! ||| |||:::||||||||||||.!!|||! |||! |||||| 9 lSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4520 : TtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt........... : 4468 340 : Intron 1 >>>> CysArgLysValGlyGluValLeuTyrMetThrAsnTrpTyrTyrL : 354 2 bp ||| !|||||||||||||||:!!|||||||||:!!|||||||||| ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrL 4467 : ..............agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATC : 4333 355 : euProTyrLysAspIleLeuAspLeuIleLeuIleIleSerArgSerAsnAlaValIleLys : 374 ||||| ! !:! ||||||||||||||||||||||||!!!|||||||||!.!|||:!!:!! euProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGlu 4332 : TGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAA : 4273 375 : IleThrAlaGlyLysLeuThrAsnMetSerIleTyrThrPheGlyAsnValMetLysThr : 394 |||||||||||||||::: :::||||||:!!||||||||||||:!!|||! :!!||| IleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThr 4272 : ATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 4211 vulgar: AmOr31 301 394 . LHQN01027980.1 4581 4210 - 276 M 37 111 5 0 2 I 0 88 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4211 4581 276 - . gene_id 2 ; sequence AmOr31 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4581 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4581 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4211 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4211 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4211 4581 276 - . alignment_id 2 ; Query AmOr31 ; Align 4582 302 111 ; Align 4379 339 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 337 -> 379 Target range: 1990 -> 1864 338 : GlnCysArgLysValGlyGluValLeuTyrMetThrAsnTrpTyrTyrLeuProTyrLysAs : 358 :!! !! !|||||||||! ! !:!!|||||||||.!.|||||| ||| !! ! ||| GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysTh 1990 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAAC : 1930 359 : pIleLeuAspLeuIleLeuIleIleSerArgSerAsnAlaValIleLysIleThrAlaGlyL : 379 ! !|||! !!!!:!!:!!|||||||||||||||!:! !|||||||||||||||||||||| rAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyL 1929 : TGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAA : 1867 380 : ys : 379 || ys 1866 : AA : 1865 vulgar: AmOr31 337 379 . LHQN01027980.1 1990 1864 - 116 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1865 1990 116 - . gene_id 3 ; sequence AmOr31 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1865 1990 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1865 1990 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1865 1990 116 - . alignment_id 3 ; Query AmOr31 ; Align 1991 338 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 394 Query range: 15 -> 165 Target range: 447 -> 3 16 : SerAsnTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerP : 37 |||:!!||||||:!!|||! !||||||||| :!!||| !||||||.!!||||||! !! ! SerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheS 447 : AGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCT : 384 38 : roSerThrThrLysLeuGluLysIleIleSerIleValLeuIleIleCysCysTyrSerSerIl : 58 !!||| !!.||||||!:!! !|||||| !:!!|||! !:!: !||||||!!!:!!|| erSer------AsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIl 383 : CGTCG------AACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAAT : 327 59 : eCysPheThrValIleProCysLeuLeuHisValMetLeuGluAspGluSerPheArgAspLys : 79 | |||:!!:!!|||||||||! !||||||:!!||||||||| ! ! !!!!||| ! ||| eLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLys 326 : ACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAA : 264 80 : LeuLysValLeuGlyProLeuSerHisTrpPheIleGlyAlaIleAsnTyrThrThrLeuLeuL : 101 :!!|||:!!||||||||||||||||||||| ! .!! !! !|||!:!||||||! !||||||| ValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuL 263 : GTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGC : 198 102 : euArgSerLysGluIleArgTyrCysIleGluHisMetGlnArgAspTrpArgIleValThrAr : 122 ||||| !!||| |||!.!:!!! !:!!.!.||||||:!!! !|||||||||! ..!||||| euArgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrAr 197 : TGCGACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgag : 135 123 : gThrGluAspGlnGlnIleMetMetLysHisAlaLysIleGlyArgTyrIleAlaValPheSer : 143 | ||| :::::::::|||:!!|||:!!||||||.!!.!!|||||| |||:!!|||!!! gLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCys 134 : aaaggagaagaaagaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGT : 72 144 : AlaAlaPheMetGlnGlyGlyValLeuSerAsnCysAlaValThrAlaPheSerThrGlnThrI : 165 ||| !|||!!:!!.||||||:!!|||.!! !!|||!.!:!!||||||! !!!!|||..!..!: AlaIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaSerThrThrMetValV 71 : GCGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTG : 6 166 : le : 165 !! al 5 : TC : 4 vulgar: AmOr32 15 165 . LHQN01027980.1 447 3 - 394 M 23 69 G 2 0 M 125 375 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4 447 394 - . gene_id 1 ; sequence AmOr32 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4 447 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4 447 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 4 447 394 - . alignment_id 1 ; Query AmOr32 ; Align 448 16 69 ; Align 379 41 375 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 303 Query range: 303 -> 407 Target range: 4578 -> 4085 304 : TrpSerValHisAspIleGlnAsnMetValValPheLeuValIleLeuLeuSerMetIlePh : 324 |||!!!! ! !||| !|||! :!: !!..!!:!:!!|||! !|||:!!:!!:!::!! TrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValValSe 4578 : TGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTGTTtc : 4518 325 : eAsnIlePheIleIleCysTyrIleGlyAspIleLeuThrGluGln >>>> Target In : 340 ||| |||:::||||||||||||.!!|||! |||||||||||| 92 b rAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4517 : taatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt.............. : 4468 341 : tron 1 >>>> CysLysMetIleGlyGluAlaValTyrMetThrAsnTrpTyrTyrLeuP : 356 p ||| !! :!!||||||!.!||||||||||||:!!||||||||||||| ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuP 4467 : ...........agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGC : 4330 357 : roGlyLysAspIleLeuAsnLeuValGlnIleIleLeuArgSerSerMetValIleLysIle : 376 || !!:! ||||||:!!|||:!!! !|||||| !||||||!:!:!!|||:!!:!!||| roGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIle 4329 : CACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATC : 4270 377 : ThrAlaGlyLysLeuValHisMetSerIleTyrThrPheGlyAsn >>>> Target Int : 392 ||||||||||||::: |||||||||:!!||||||||||||:!! 89 bp ThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4269 : ACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt............... : 4220 393 : ron 2 >>>> ValMetLysThrAlaPheAlaTyrLeuAsnLeuLeuArgGlnMetThr : 407 |||:!:||||||!.!|||||||||||||||:!!||| !!||||||:!! ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMetSer 4219 : ..........agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAAATGTCC : 4086 vulgar: AmOr32 303 407 . LHQN01027980.1 4578 4085 - 303 M 36 108 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4086 4578 303 - . gene_id 2 ; sequence AmOr32 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4578 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4578 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4223 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 2 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 2 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 1 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4086 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4086 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4086 4578 303 - . alignment_id 2 ; Query AmOr32 ; Align 4579 304 108 ; Align 4379 340 156 ; Align 4134 392 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 342 -> 383 Target range: 1978 -> 1855 343 : IleGlyGluAlaValTyrMetThrAsnTrpTyrTyrLeuProGlyLysAspIleLeuAsnLe : 363 :!!|||! ! !||||||||||||.!.|||||| ||| !! !||| ! !|||..!!! ValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGlyPh 1978 : GTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGGTTT : 1918 364 : uValGlnIleIleLeuArgSerSerMetValIleLysIleThrAlaGlyLysLeuValHis : 383 !|||..!||||||! !||||||||||||||||||||||||||||||||||||!!!|||:!! eValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheValTyr 1917 : TGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTATAC : 1856 vulgar: AmOr32 342 383 . LHQN01027980.1 1978 1855 - 122 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1856 1978 122 - . gene_id 3 ; sequence AmOr32 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1856 1978 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1856 1978 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1856 1978 122 - . alignment_id 3 ; Query AmOr32 ; Align 1979 343 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 229 Query range: 3 -> 154 Target range: 501 -> 48 4 : IleThrLeuAsnGluSerAspCysLysAlaArgAsnLeuLysTyrLysGluAspIleAlaTyrV : 25 :!!|||:!!!:!.!...! ! ! !!.!! !.!.:!!!!. ! ! ..!! !! !||| ValThrMetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrS 501 : GTCACGATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACA : 438 26 : alThrLysHisAsnLysTrpIleLeuLysSerIleGlyIleTrpProSerIlePheLysAspVa : 46 ! !:!! |||::!||| :!!||||||||||||! !||||||..!.!!! ..!:!!:! erLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerAsnLe 437 : GTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGAACCT : 375 47 : lSerLysPheLeuProLysIleMetPheGlyLeuCysAsnPheValLeuPhePheAlaIleIle : 67 !..!!:! !:!! !!::!|||:!: !! !:!!||| !! !!.!:!!.!.|||:!!|||||| uGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIle 374 : CGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATC : 312 68 : ProCysIleLeuTyrIleValIleGluGluAsnAspThrMetIleArgPheLysLeuPheGlyL : 89 |||||| |||:!!:!!:!!:!:|||:!!... ! ! ! !:! ! |||:!!.!!|||! ProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyP 311 : CCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTC : 246 90 : euLeuSerPheCysLeuValAlaLeuIleLysTyrTrpThrLeuLeuTyrArgLysSerArgIl : 110 !|||||| !!! :!! !!..!:!!|||!..||| ! !|||||| |||:::!.!! !|| roLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIl 245 : CGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCAT : 183 111 : eLysAsnCysValGluGlnIleTrpIleAspTrpGluGlnValGluLeuTyrGluAspArgGlu : 131 | ! :!!! !|||.!.!!.!!: !! !||||||..! !..! ||| :::||| eHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGlu 182 : ACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaa : 120 132 : MetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuMetIleIleCysAlaMetPheThrTyrT : 153 :::||||||||||||!.!:!!.!..!!||| !! ! !|||.!!||||||!!:|||! !:!! ValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisG 119 : gtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACG : 54 154 : hrGly : 154 !||| lyGly 53 : GTGGT : 49 vulgar: AmOr59 3 154 . LHQN01027980.1 501 48 - 229 M 151 453 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 49 501 229 - . gene_id 1 ; sequence AmOr59 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 49 501 . - . LHQN01027980.1 exonerate:protein2genome:local exon 49 501 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 49 501 229 - . alignment_id 1 ; Query AmOr59 ; Align 502 4 453 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 204 Query range: 301 -> 403 Target range: 4590 -> 4103 302 : CysIleThrAspTrpGluLeuAsnAsnThrIleSerLeuThrThrTyrIleIleLeuLeuIl : 322 |||.!! !!!:||| ! !!:!:!!.!! !! !||| !|||||||||:!! !|||:! CysPhe***GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuVa 4590 : tgctTCTAGGAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGT : 4530 323 : eSerLeuIlePheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuMetGluLys >> : 342 !:!!:!!:!! ||| |||::::::|||||||||.!!!!: !|||! |||:!! lAlaValValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4529 : TGCTGTTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt.. : 4468 343 : >> Target Intron 1 >>>> SerSerAsnIleGlyLeuSerCysPheMetIleAspT : 354 92 bp !!!! !!!.:!!||| ! ! !!:!|||! !|||| ++CysLeuLysValGlyGluValValTyrMetThrAspT 4467 : .......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATT : 4342 355 : rpTyrTyrLeuProSerLysThrIleArgGlyLeuIleLeuMetIleAlaIleSerSerAsn : 374 ||||||||||||||..!!:!! !|||! !! !|||||||||!!:|||.!! !|||!:! rpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnVal 4341 : GGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTG : 4282 375 : ProThrLysIleSerAlaGlyGlyIleValAspLeuSerLeuSerThrPheGlyAsn >>> : 394 !..!:!!|||!!!|||||| ||| :::||||||! !|||||||||:!! ValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4281 : GTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt... : 4220 395 : > Target Intron 2 >>>> ValLeuLysThrSerPheAlaTyrLeuAsn : 403 89 bp |||:!!||||||.!!||||||||||||||| ++ValValLysThrGlyPheAlaTyrLeuAsn 4219 : ......................agGTAGTAAAAACAGGATTCGCCTACTTGAAT : 4104 vulgar: AmOr59 301 403 . LHQN01027980.1 4590 4103 - 204 M 40 120 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4104 4590 204 - . gene_id 2 ; sequence AmOr59 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4590 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4590 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4223 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 2 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 2 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 1 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4104 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4104 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4104 4590 204 - . alignment_id 2 ; Query AmOr59 ; Align 4591 302 120 ; Align 4379 342 156 ; Align 4134 394 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 316 Query range: 15 -> 155 Target range: 447 -> 33 16 : SerGluTyrSerIleLysLeuSerArgTrpTyrLeuLysProLeuGlyAlaTrpProAlaSerS : 37 |||!!:||||||:!!:!!! !!:!|||||| :!!||| !:!!|||.!!|||||| !! !| SerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheS 447 : AGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCT : 384 38 : erSerThrThrLysMetGluArgIleIleSerGlnIleLeuIleValIleCysTrpCysIleIl : 58 ||||| !!.:!:||||||! !||||||!:!||||||! !|||||||||!:: ! !|| erSer------AsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIl 383 : CGTCG------AACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAAT : 327 59 : eLeuPheThrValIleProGlyIleLeuTyrIleLeuPheValLysGlnAspIleTyrValLys : 79 |||||||:!!:!!|||||| !! |||:!!:!!:!!.!.! !||| ! !.!!|||..!||| eLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLys 326 : ACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAA : 264 80 : LeuLysIlePheGlyProLeuSerHisTrpCysIleAspGlyPheAsnTyrAlaIleLeuLeuL : 101 :!!||||||.!!|||||||||||||||||| .!! ! !.!!!:!|||.!!!!:||||||| ValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuL 263 : GTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGC : 198 102 : euArgLysAsnAspIleLeuHisCysIleGluHisLeuArgAlaAspTrpLysLeuIleThrAr : 122 |||||:::!!. !|||! !|||! !:!!.!.|||:!!..!.!!||||||!:! !! ||||| euArgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrAr 197 : TGCGACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgag : 135 123 : gThrGlnAspGlnGlnValMetLeuArgAsnAlaLysMetGlyArgTyrIleAlaAlaPheCys : 143 | ::: ::::::|||||||||!:! !!||||||.!..!!|||||| ||| !|||||| gLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCys 134 : aaaggagaagaaagaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGT : 72 144 : AlaIlePheMetGlnValIleIlePhePheThrCys : 155 |||||||||!!:!!.! ! !|||.!! !||| AlaIlePheIleHisGlyGlyIleLeuGlyTyrCys 71 : GCGATCTTCATACACGGTGGTATACTTGGATATTGT : 34 vulgar: AmOr50 15 155 . LHQN01027980.1 447 33 - 316 M 23 69 G 2 0 M 115 345 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 34 447 316 - . gene_id 1 ; sequence AmOr50 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 34 447 . - . LHQN01027980.1 exonerate:protein2genome:local exon 34 447 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 34 447 316 - . alignment_id 1 ; Query AmOr50 ; Align 448 16 69 ; Align 379 41 345 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 237 Query range: 337 -> 406 Target range: 4381 -> 4085 338 : GlnCysLysLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspLysAs : 358 |||||| !|||||||||!!::!!||||||||||||:!!|||||| ! ||||||.!.!:! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 359 : pIleLeuAsnLeuIleMetIleIleSerArgSerSerValGluValLysIleThrAlaGlyL : 379 ||||||:!!||||||:!!||||||!!!||||||!:!|||! |||:!!||||||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 380 : ysIleIleThrMetSerIleTyrThrPheGlyAsn >>>> Target Intron 1 >>>> : 391 |||||... ||||||:!!||||||||||||:!! 89 bp ysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATgt......................... : 4220 392 : IleValLysThrValPheAlaTyrLeuAsnMetLeuArgGlnIleThr : 406 :!!|||||||||! !||||||||||||||||||||| !!|||!!::!! ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMetSer 4219 : agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAAATGTCC : 4086 vulgar: AmOr50 337 406 . LHQN01027980.1 4381 4085 - 237 M 53 159 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4086 4381 237 - . gene_id 2 ; sequence AmOr50 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4223 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4086 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4086 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4086 4381 237 - . alignment_id 2 ; Query AmOr50 ; Align 4382 338 159 ; Align 4134 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 134 Query range: 337 -> 391 Target range: 1990 -> 1822 338 : GlnCysLysLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspLysAs : 358 :!! !! |||||||||! ! ||||||||||||.!.||||||!:!||| !!.!.||| GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysTh 1990 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAAC : 1930 359 : pIleLeuAsnLeuIleMetIleIleSerArgSerSerValGluValLysIleThrAlaGlyL : 379 ! !|||..!!!!:!!|||||||||||||||||||||:!!! !:!!|||||||||||||||| rAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyL 1929 : TGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAA : 1867 380 : ysIleIle<-><->ThrMetSerIleTyrThrPheGlyAsnIle : 391 ||.!!:!! ||| !|||:!! |||||||||:!!:!: ysPheValTyr***ThrSerSerValAlaThrPheGlyAspVal 1866 : AATTCGTATACTGAACATCGTCTGTCGCAACATTTGGCGATGTG : 1823 vulgar: AmOr50 337 391 . LHQN01027980.1 1990 1822 - 134 M 44 132 G 0 6 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1823 1990 134 - . gene_id 3 ; sequence AmOr50 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1823 1990 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1823 1990 . - . insertions 6 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1823 1990 134 - . alignment_id 3 ; Query AmOr50 ; Align 1991 338 132 ; Align 1853 382 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr35 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 178 Query range: 307 -> 402 Target range: 4581 -> 4204 308 : GluTrpGluGlnSerGluThrIleGlyIleLeuThrTyrCysIleLeuLeuIleSerPheIl : 328 |||||| !:!!|||!!:.!! ! !:!!!!!|||||| !:!! !|||:!!:!! !!:! GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValVa 4581 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTGT : 4521 329 : ePheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuSerGluGlu >>>> Target : 345 ! ||| |||::::::|||||||||.!!!!:! |||!!!|||:!! 9 lSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4520 : TtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt........... : 4468 346 : Intron 1 >>>> CysLysSerIleGlyLeuSerAlaTyrMetIleAspTrpHisArgL : 360 2 bp ||| !!.!:!!||| ! !!.!||||||! !||||||:!! !| ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrL 4467 : ..............agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATC : 4333 361 : euProGlyLysLysAlaLeuSerLeuIleLeuIleSerAlaAlaSerAsnSerSerThrLys : 380 ||||| !!:!!:! !|||..!||||||||||||! !.!! !|||||| ! !..!:!! euProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGlu 4332 : TGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAA : 4273 381 : LeuThrAlaGlyLysLeuValGluLeuSerLeuSerSerPheCysSerValLeuLysSerSe : 401 :!!||||||||||||::: ...:::||||||! !!!!||| !!..!||| !:!!!!!!: IleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAs 4272 : ATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAA : 4210 402 : rLeu : 402 !||| nLeu 4209 : TCTT : 4205 vulgar: AmOr35 307 402 . LHQN01027980.1 4581 4204 - 178 M 37 111 5 0 2 I 0 88 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4205 4581 178 - . gene_id 1 ; sequence AmOr35 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4581 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4581 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4205 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4205 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4205 4581 178 - . alignment_id 1 ; Query AmOr35 ; Align 4582 308 111 ; Align 4379 345 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 203 Query range: 23 -> 161 Target range: 441 -> 36 24 : TyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpProLeuIleTyrAsnG : 45 |||!:!|||||| ! !!:!||| !:!!||| !||||||..!||||||! !.!! TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPhe------- 441 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTC------- : 384 46 : lnThrSerArgPheGluGlnLeuIleSerIleIleLeuMetGlyThrCysPheSerSerLeuLe : 66 :!!|||!.!.!!|||::! !|||||| !||||||! ! !! !|||!:!!!!:!!:!!|| --SerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLe 383 : --TCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACT : 324 67 : uPheIleIleLeuProSerGlyHisHisIleLeuPheValGluLysAsnLeuHisMetLysVal : 87 |||| |||:!!|||!!!..! |||:!!:!!.!.! !:!! !!.!!!!:!!! !|||||| uPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysVal 323 : ATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTG : 261 88 : LysAlaPheGlyProAlaGlyPheCysLeuSerSerThrIleLysTyrCysTyrLeuGlyLeuL : 109 ||| !.!!|||||| !.!! !!! :!!! !!!!! !|||!..||| ! ||| !|||: LysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuA 260 : AAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGC : 195 110 : ysGlySerSerPheGluArgCysIleGluHisMetArgLysAspTrpMetMetValGlnAspPr : 130 :! !!!.!!!!.!..!.!.!! !:!!.!.||||||..!! ||||||! ! !..! rgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLy 194 : GACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaa : 132 131 : oAsnHisArgThrIleMetLeuLysTyrAlaThrIleSerArgLysLeuIleThrMetCysAla : 151 ... ::: :::|||||||||||||||! !.!!|||||| ! ! ! !.!.|||||| sGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAla 131 : ggagaagaaagaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCG : 69 152 : ValPheLeuTyrThrGlyGlyMetSerTyr : 161 :!!|||:!!:!! !||| !:!:.!!||| IlePheIleHisGlyGlyIleLeuGlyTyr 68 : ATCTTCATACACGGTGGTATACTTGGATAT : 37 vulgar: AmOr53 23 161 . LHQN01027980.1 441 36 - 203 M 19 57 G 3 0 M 116 348 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 37 441 203 - . gene_id 1 ; sequence AmOr53 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 37 441 . - . LHQN01027980.1 exonerate:protein2genome:local exon 37 441 . - . insertions 0 ; deletions 3 LHQN01027980.1 exonerate:protein2genome:local similarity 37 441 203 - . alignment_id 1 ; Query AmOr53 ; Align 442 24 57 ; Align 385 46 348 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 341 -> 401 Target range: 4381 -> 4201 342 : GlnCysSerGlnIleGlyThrValSerTyrGluIleAspTrpTyrLysLeuSerProLysGl : 362 ||||||! !:!!:!!||| !||| !||| !! !||||||||| ! ||| !!! !!:!.. GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 363 : uAlaTyrAspLeuIleLeuLeuIleSerIleSerGlnHisProProLysLeuThrAlaGlyL : 383 ! ! !||||||||||||:!!|||!!! !|||.!. ! !:!!:!!|||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 384 : ysIleIleGluLeuSerLeuAsnThrPheSerThrValAlaLysThrSerValVal : 401 |||||......:::|||||| !!||||||.!! !|||::!:!!|||!:!:!!||| ysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeuVal 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTTGTT : 4202 vulgar: AmOr53 341 401 . LHQN01027980.1 4381 4201 - 132 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4202 4381 132 - . gene_id 2 ; sequence AmOr53 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4202 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4202 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4202 4381 132 - . alignment_id 2 ; Query AmOr53 ; Align 4382 342 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 208 Query range: 23 -> 158 Target range: 441 -> 36 24 : TyrValThrLysHisSerLysTrpIleLeuLysSerIleGlyIleTrpProIleIleLeuLysA : 45 ||| ! !:!! !:!::!||| :!!||||||||||||! !|||||| .!!! !..!: TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerA 441 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGA : 378 46 : spValAlaLysPheLeuProLysIleValIleGlyIleSerAsnPheValLeuLeuPheAlaIl : 66 !!:!!! !!:! !:!! !!::!|||:!!! !! !|||!!! !! !!.!:!!||||||:!!|| snLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIl 377 : ACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGAT : 315 67 : eIleProCysIleLeuTyrIleIleLeuGluGluLysAsnAsnLeuIleLysLeuLysLeuPhe : 87 |||||||||| |||:!!:!!!!:||||||:!! !!.! !! !! |||:!!|||:!!.!! eIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeu 314 : AATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTC : 252 88 : GlyLeuLeuMetPheCysSerIleAlaLeuMetLysHisTrpAlaLeuAlaTyrArgLysProL : 109 |||! !|||! !!! !.!!..!:!!!!:!..:!! !||| ! |||::: !! GlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysT 251 : GGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAA : 186 110 : ysIleLysAsnCysIleGluGlnIleGlnAsnAspTrpGluGlnValLysLeuTyrGluAspAr : 130 ||| ! :!!! !:!!.!.!!.!!::!!!.!||||||..! !..! ||| :: hrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLy 185 : CCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaa : 123 131 : gGluMetMetLeuLysTyrGlyGlnValGlyArgAsnLeuThrIleIleCysAlaValPheMet : 151 :|||:::||||||||||||!.!:!! !!.!!||| !! !.!!|||.!!||||||:!!|||!!: sGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIle 122 : agaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATA : 60 152 : TyrThrGlyGlyIleIleTyr : 158 :!! !||| !:!! !||| HisGlyGlyIleLeuGlyTyr 59 : CACGGTGGTATACTTGGATAT : 37 vulgar: AmOr60 23 158 . LHQN01027980.1 441 36 - 208 M 135 405 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 37 441 208 - . gene_id 1 ; sequence AmOr60 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 37 441 . - . LHQN01027980.1 exonerate:protein2genome:local exon 37 441 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 37 441 208 - . alignment_id 1 ; Query AmOr60 ; Align 442 24 405 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 175 Query range: 301 -> 400 Target range: 4590 -> 4201 302 : CysIleThrAspTrpGluLeuLysAsnThrIleSerLeuThrThrTyrIleIleLeuLeuIl : 322 |||.!! !!!:||| ! !!..:!!.!! !! !||| !|||||||||:!! !|||:! CysPhe***GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuVa 4590 : tgctTCTAGGAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGT : 4530 323 : eSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuMetGluLys >> : 342 !:!!:!!..! ||| |||::::::|||||||||.!!!!: !|||! |||:!! lAlaValValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4529 : TGCTGTTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt.. : 4468 343 : >> Target Intron 1 >>>> SerSerSerIleGlyLeuSerCysPheMetIleAspT : 354 92 bp !!!! !!.!:!!||| ! ! !!:!|||! !|||| ++CysLeuLysValGlyGluValValTyrMetThrAspT 4467 : .......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATT : 4342 355 : rpTyrHisLeuProValLysThrIleGlnGlyLeuIleLeuIleIleAlaIleSerAsnSer : 374 |||||:!!|||||| !!:!! !|||! ! !|||||||||||||||.!! !|||||| ! rpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnVal 4341 : GGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTG : 4282 375 : ProThrLysIleSerAlaGlyGlyIleValAspLeuSerLeuPheThrPheAlaAsnIleLe : 395 !..!:!!|||!!!|||||| ||| :::||||||!:!||||||!.!:!!:!! ValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSe 4281 : GTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAG : 4219 396 : uLysThrSerPheVal : 400 !:!!|||!:!.!!||| rGluThrAsnLeuVal 4218 : TGAAACTAATCTTGTT : 4202 vulgar: AmOr60 301 400 . LHQN01027980.1 4590 4201 - 175 M 40 120 5 0 2 I 0 88 3 0 2 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4202 4590 175 - . gene_id 2 ; sequence AmOr60 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4590 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4590 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4202 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4202 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4202 4590 175 - . alignment_id 2 ; Query AmOr60 ; Align 4591 302 120 ; Align 4379 342 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 262 Query range: 0 -> 158 Target range: 495 -> 27 1 : MetMetAlaAspAspIleAlaThrValGlnLysGluPheAsnAsnLeuAsnGluTyrSerIleG : 22 |||! !||| ! ! !!.!..!..!:!!! .!..!.!.! ! !!:!!!:||||||:!!| MetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuG 495 : ATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCC : 432 23 : lnPheAsnLysTrpPheSerLysThrIleGlyValTrpProLeuProSerSerThrSerLysPh : 43 ||!::|||::!||| ! !|||!:!||||||..!||| |||..!! !:!!|||!!..! lnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrp------ProGlnPheSerSerAsnLe 431 : AGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGG------CCACAGTTCTCGTCGAACCT : 375 44 : eGluLysIleValThrArgIleLeuIleIleValCysSerIleIleThrLeuPheValIleIle : 64 !|||!:!! !:!!:!!|||||||||! !:!::!!|||! !! ! !! !|||||| !|||||| uGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIle 374 : CGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATC : 312 65 : ProSerMetLeuHisPheIleLeuValLysGluAspIleIleSerLysLeuLysSerLeuGlyP : 86 |||!!! !||||||.!.!!:|||! !|||! ! !.!! !!!!|||:!!|||! !||||||| ProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyP 311 : CCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTC : 246 87 : roIleSerTyrCysPheGlyGlyGlyLeuAsnTyrAlaValLeuLeuLeuArgLysAsnAspIl : 107 ||:!:|||:!!!! ! ! !! !:!!!:!|||.!!:!!||||||||||||:::!!. !|| roLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIl 245 : CGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCAT : 183 108 : eArgTyrCysIleAspHisIleGluThrAspTrpLysValIleThrArgMetThrAspArgGln : 128 |!.!:!!! !:!!:!!|||!!:||||||||||||!:!..!! |||||| :::::: eHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGlu 182 : ACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaa : 120 129 : ValMetLeuLysAsnAlaLysIleGlyArgIleIleSerCysCysIleValGlyPheLeuGlnI : 150 |||||||||||| !!||||||.!!.!!||| ! :!! !! ! !!.! !|||:!!!!. ValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisG 119 : gtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACG : 54 151 : leGlyThrPheCysPheCysThrIle : 158 !|||! !.!! ! !:!|||..!!!: lyGlyIleLeuGlyTyrCysValMet 53 : GTGGTATACTTGGATATTGTGTTATG : 28 vulgar: AmOr38 0 158 . LHQN01027980.1 495 27 - 262 M 34 102 G 2 0 M 122 366 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 28 495 262 - . gene_id 1 ; sequence AmOr38 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 28 495 . - . LHQN01027980.1 exonerate:protein2genome:local exon 28 495 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 28 495 262 - . alignment_id 1 ; Query AmOr38 ; Align 496 1 102 ; Align 394 37 366 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 255 Query range: 300 -> 393 Target range: 4581 -> 4210 301 : GluTrpSerGluHisAsnIleArgIleLeuGlyThrTyrIleIleThrValIleAsnIleTh : 321 ||||||!!!||| !:!! !!:!!!:||| !|||||||||:!!|||:!!:!! !:!!.. GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValVa 4581 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTGT : 4521 322 : rLeuAsnThrPheLeuIleCysTyrIleGlyGluValLeuThrGluArg >>>> Target : 338 ! ||||||||||||||||||||||||.!!!!: !|||||||||!:! 9 lSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4520 : TtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt........... : 4468 339 : Intron 1 >>>> CysLysGluIleGlyAspMetValTyrMetThrAsnTrpTyrArgL : 353 2 bp ||| !:!!:!!|||!!::!!||||||||||||:!!|||||| !| ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrL 4467 : ..............agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATC : 4333 354 : euProLysLysAspIleLeuAsnLeuIleMetIleIleThrArgSerSerValGluTyrLys : 373 |||||:!!!:! ||||||:!!||||||:!!|||||||||||||||!:!|||! !:!! euProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGlu 4332 : TGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAA : 4273 374 : MetThrAlaGlyLysIleIleAspMetSerValIleThrPheGlyAsnIleIleLysThr : 393 !!:|||||||||||||||... ||||||:!! !|||||||||:!!:!!! !:!!||| IleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThr 4272 : ATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 4211 vulgar: AmOr38 300 393 . LHQN01027980.1 4581 4210 - 255 M 37 111 5 0 2 I 0 88 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4211 4581 255 - . gene_id 2 ; sequence AmOr38 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4581 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4581 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4211 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4211 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4211 4581 255 - . alignment_id 2 ; Query AmOr38 ; Align 4582 301 111 ; Align 4379 338 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 339 -> 380 Target range: 1981 -> 1858 340 : GluIleGlyAspMetValTyrMetThrAsnTrpTyrArgLeuProLysLysAspIleLeuAs : 360 :!!:!!|||! ! ||||||||||||.!.|||||||||||| !!:!!||| ! !|||.. LysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGl 1981 : AAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGG : 1921 361 : nLeuIleMetIleIleThrArgSerSerValGluTyrLysMetThrAlaGlyLysIleIle : 380 !!!!:!!|||||||||:!!|||||||||:!!! ! |||!!:||||||||||||.!!:!! yPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheVal 1920 : TTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTA : 1859 vulgar: AmOr38 339 380 . LHQN01027980.1 1981 1858 - 120 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1859 1981 120 - . gene_id 3 ; sequence AmOr38 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1859 1981 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1859 1981 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1859 1981 120 - . alignment_id 3 ; Query AmOr38 ; Align 1982 340 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 348 Query range: 15 -> 156 Target range: 447 -> 30 16 : SerGluTyrSerIleGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProAlaSerP : 37 |||!!:||||||:!!|||!::||||||||| :!!||| !||||||.!!|||||| ! SerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGln---- 447 : AGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAG---- : 387 38 : heTyrLysSerArgIleGluLysIleValSerLysIleLeuIleValIleCysTrpIleSerSe : 58 !:!..!|||!.!:!!|||!:!! !:!!|||::!||||||! !|||||||||!::! !:!!! --PheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIl 386 : --TTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAAT : 327 59 : rLeuPheThrLeuIleProGlyValLeuHisPhePheLeuGluLysGluAspIleTyrValLys : 79 !||||||:!!:!!|||||| !! !||||||.!..!.|||||||||! ! !.!!|||..!||| eLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLys 326 : ACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAA : 264 80 : LeuLysIleLeuGlyProLeuThrHisTrpLeuValGlyGlyPheAsnTyrAlaValLeuLeuL : 101 :!!||||||||||||||||||!:!||||||:!! !! !! !.!!!:!|||.!!:!!||||||| ValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuL 263 : GTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGC : 198 102 : euArgLysAspAspIleTyrTyrCysIleLysGlnIleCysAlaAspTrpAsnIleIleThrLy : 122 |||||::: ! !|||:!!:!!! !:!!!!.!!.!!: .!!||||||!..! ! |||:: euArgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrAr 197 : TGCGACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgag : 135 123 : sLysGlnAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaValPheCys : 143 :|||::: ::::::|||||||||||| !!||||||.!!.!!||||||!.!|||:!!|||||| gLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCys 134 : aaaggagaagaaagaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGT : 72 144 : ThrValPheLeuGlnGlyGlyValPheCysThrCysLeu : 156 .!!:!!|||:!!!!.||||||:!!.!! ! !|||:!! AlaIlePheIleHisGlyGlyIleLeuGlyTyrCysVal 71 : GCGATCTTCATACACGGTGGTATACTTGGATATTGTGTT : 31 vulgar: AmOr49 15 156 . LHQN01027980.1 447 30 - 348 M 20 60 G 2 0 M 119 357 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 31 447 348 - . gene_id 1 ; sequence AmOr49 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 31 447 . - . LHQN01027980.1 exonerate:protein2genome:local exon 31 447 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 31 447 348 - . alignment_id 1 ; Query AmOr49 ; Align 448 16 60 ; Align 388 38 357 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 261 Query range: 299 -> 404 Target range: 4581 -> 4085 300 : GluTrpSerGluHisAsnIleGlnAsnLeuThrValTyrValMetIleIleIleSerMetTh : 320 ||||||!!!||| !:!! !|||! ||| !..!|||:!!:!:! !:!!:!!:!!:!:.. GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValVa 4581 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTGT : 4521 321 : rTyrAsnIlePheLeuValCysTyrIleGlyGluIleIleThrGluGlu >>>> Target : 337 ! ||| ||||||:::|||||||||.!!!!:! :!:||||||:!! 9 lSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4520 : TtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt........... : 4468 338 : Intron 1 >>>> CysLysLysIleGlyAspIleValTyrMetThrAsnTrpTyrGluL : 352 2 bp ||| !|||:!!|||!!::!:||||||||||||:!!|||||| ! | ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrL 4467 : ..............agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATC : 4333 353 : euSerAspLysAsnIleLeuAsnLeuMetMetIleIleThrArgSerSerMetAsnIleAsn : 372 || !!.!.!:!!..||||||:!!|||!!::!!|||||||||||||||!:!:!! !:!!.!. euProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGlu 4332 : TGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAA : 4273 373 : MetThrAlaGlyLysMetThrAsnMetSerValLeuThrPheGlyLys >>>> Target : 389 !!:||||||||||||::: :::||||||:!!! !||||||||| ! 89 IleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4272 : ATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt............ : 4220 390 : Intron 2 >>>> IleValLysSerIlePheAlaTyrLeuAsnValLeuArgGlnIleTh : 404 bp :!!||||||!!! !|||||||||||||||:!!||| !!|||!!::! ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMetSe 4219 : .............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAAATGTC : 4088 405 : r : 404 ! r 4087 : C : 4086 vulgar: AmOr49 299 404 . LHQN01027980.1 4581 4085 - 261 M 37 111 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4086 4581 261 - . gene_id 2 ; sequence AmOr49 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4581 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4581 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4223 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 2 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 2 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 1 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4086 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4086 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4086 4581 261 - . alignment_id 2 ; Query AmOr49 ; Align 4582 300 111 ; Align 4379 337 156 ; Align 4134 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 335 -> 377 Target range: 1990 -> 1864 336 : GluCysLysLysIleGlyAspIleValTyrMetThrAsnTrpTyrGluLeuSerAspLysAs : 356 ||| !! |||:!!|||! ! !||||||||||||.!.||||||..!||||||.!.|||!. GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysTh 1990 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAAC : 1930 357 : nIleLeuAsnLeuMetMetIleIleThrArgSerSerMetAsnIleAsnMetThrAlaGlyL : 377 ! !|||..!!!!:!:|||||||||:!!|||||||||||| |||!!.!!:|||||||||| rAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyL 1929 : TGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAA : 1867 378 : ys : 377 || ys 1866 : AA : 1865 vulgar: AmOr49 335 377 . LHQN01027980.1 1990 1864 - 123 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1865 1990 123 - . gene_id 3 ; sequence AmOr49 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1865 1990 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1865 1990 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1865 1990 123 - . alignment_id 3 ; Query AmOr49 ; Align 1991 336 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr51 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 338 -> 403 Target range: 4381 -> 4097 339 : GlnGlySerGluIleAlaThrAlaLeuTyrGluIleGluTrpTyrAsnLeuProGlyArgLy : 359 ||| !!! !:!!:!!!.! !!.!:!!||| !! !!!:|||||| !!|||||| !|||!: GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 360 : sAlaArgAspIleIleLeuLeuLeuValIleSerLysTyrProProLysLeuThrAlaGlyL : 380 ! !! !|||:!!||||||:!!:!!..! !|||!!. ! !:!!:!!|||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 381 : ysIlePheIleLeuSerMetAsnThrPheSerVal >>>> Target Intron 1 >>>> : 392 |||||||| :::|||:!: !!||||||.!!! ! 89 bp ysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATgt......................... : 4220 393 : ValLeuLysSerSerValValTyrLeuAsnMetLeu : 403 |||:!!|||!!!.!! !!!.!||||||||||||||| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeu 4219 : agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTT : 4098 vulgar: AmOr51 338 403 . LHQN01027980.1 4381 4097 - 131 M 53 159 5 0 2 I 0 85 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4098 4381 131 - . gene_id 1 ; sequence AmOr51 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4223 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4098 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4098 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4098 4381 131 - . alignment_id 1 ; Query AmOr51 ; Align 4382 339 159 ; Align 4134 392 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 255 Query range: 2 -> 157 Target range: 486 -> 27 3 : AspAspIleValAlaValGlnLysLysPheGlySerLeuAsnGluTyrSerIleGlnLeuAsnA : 24 ||| ! ! !|||!.!..!:!!! !!..!. !:!! !!:!!!:||||||:!!|||! !|||| AspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnA 486 : GACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATC : 423 25 : rgTrpLeuSerLysMetIleGlyValTrpProLeuProSerPheThrSerLysPheGluLysIl : 45 ||||| !! !|||! ||||||..!||| |||..!|||:!!|||!!..!!|||!:!! rgTrpAlaMetLysSerIleGlyThrTrp------ProGlnPheSerSerAsnLeuGluArgAs 422 : GATGGGCGATGAAAAGCATAGGCACATGG------CCACAGTTCTCGTCGAACCTCGAGAGAAA : 366 46 : eMetThrLysIleLeuIlePhePheTyrTrpIleIleLeuLeuPheIleIleLeuAlaSerSer : 66 !!!::!!::!||||||! ! ! .!!! !!::! ! !:!!|||||| |||:!! !!!!!||| nIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSer 365 : CATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCG : 303 67 : LeuHisPheLeuPheValLysGluAspIleValSerLysLeuLysThrLeuGlyProIleSerT : 88 ||||||.!.:!!.!.! !|||! ! !.!! !!!!|||:!!|||! !|||||||||:!:|||: LeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyProLeuSerH 302 : TTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCC : 237 89 : yrCysPheGlyGlyGlyPheAsnTyrAlaValLeuLeuLeuArgLysAsnAspIleArgTyrCy : 109 !!!! ! ! !! !.!!!:!|||.!!:!!||||||||||||:::!!. !|||!.!:!!! isTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPh 236 : ACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTT : 174 110 : sIleGluHisIleGluThrAspTrpLysIleIleLysArgMetGluAspGlnGlnValMetLeu : 130 !:!!.!.|||!!:||||||||||||!:!! ! ||| ||| ::::::||||||||| eValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeu 173 : TGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGCTG : 111 131 : LysSerAlaLysIleGlyArgIleIleSerGlyCysIleAlaGlyPheMetHisIleGlyThrP : 152 |||! !||||||.!!.!!||| ! :!! !! ! !||| !|||!!:||| !|||! !. LysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleL 110 : AAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTATAC : 45 153 : heCysPheCysIleVal : 157 !! ! !:!|||:!!:!! euGlyTyrCysValMet 44 : TTGGATATTGTGTTATG : 28 vulgar: AmOr48 2 157 . LHQN01027980.1 486 27 - 255 M 31 93 G 2 0 M 122 366 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 28 486 255 - . gene_id 1 ; sequence AmOr48 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 28 486 . - . LHQN01027980.1 exonerate:protein2genome:local exon 28 486 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 28 486 255 - . alignment_id 1 ; Query AmOr48 ; Align 487 3 93 ; Align 394 36 366 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 225 Query range: 299 -> 395 Target range: 4581 -> 4201 300 : GluTrpSerGluArgAspIleArgValLeuGlyIleTyrThrPheAlaValMetAsnValIl : 320 ||||||!!!|||!!!||| !!:!:!!||| !! |||! ! ! .!!:!!:!: !|||:! GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValVa 4581 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTGT : 4521 321 : eLeuSerThrPheLeuIleCysTyrIleGlyGluValLeuThrGluArg >>>> Target : 337 ! :::|||||||||||||||||||||.!!!!: !|||||||||!:! 9 lSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4520 : TtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt........... : 4468 338 : Intron 1 >>>> CysLysGluIleGlyAsnMetValTyrMetThrAsnTrpTyrHisL : 352 2 bp ||| !:!!:!!|||.!.:!!||||||||||||:!!||||||:!!| ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrL 4467 : ..............agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATC : 4333 353 : euProAspLysAspIlePheAsnLeuIleMetIleIleValArgSerGlyValGluTyrLys : 372 |||||.!.!:! |||.!!:!!||||||:!!||||||..!||||||..!|||! !:!! euProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGlu 4332 : TGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAA : 4273 373 : MetThrAlaGlyLysIleIleAspIleSerValIleThrPheGlyAsnIleValLysThrVa : 393 !!:|||||||||||||||... :::|||:!! !|||||||||:!!:!! !:!!||| IleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAs 4272 : ATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAA : 4210 394 : lPheVal : 395 !.!!||| nLeuVal 4209 : TCTTGTT : 4202 vulgar: AmOr48 299 395 . LHQN01027980.1 4581 4201 - 225 M 37 111 5 0 2 I 0 88 3 0 2 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4202 4581 225 - . gene_id 2 ; sequence AmOr48 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4581 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4581 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4202 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4202 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4202 4581 225 - . alignment_id 2 ; Query AmOr48 ; Align 4582 300 111 ; Align 4379 337 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 338 -> 379 Target range: 1981 -> 1858 339 : GluIleGlyAsnMetValTyrMetThrAsnTrpTyrHisLeuProAspLysAspIlePheAs : 359 :!!:!!|||...! ||||||||||||.!.||||||!..||| !!.!.||| ! !.!!.. LysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGl 1981 : AAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGG : 1921 360 : nLeuIleMetIleIleValArgSerGlyValGluTyrLysMetThrAlaGlyLysIleIle : 379 !!!!:!!||||||||| !||||||.!!:!!! ! |||!!:||||||||||||.!!:!! yPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheVal 1920 : TTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTA : 1859 vulgar: AmOr48 338 379 . LHQN01027980.1 1981 1858 - 104 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1859 1981 104 - . gene_id 3 ; sequence AmOr48 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1859 1981 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1859 1981 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1859 1981 104 - . alignment_id 3 ; Query AmOr48 ; Align 1982 339 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 240 Query range: 282 -> 405 Target range: 4640 -> 4085 283 : GluMetPheLysAsnIleLeuSerIleCysMetLeuSerTyrCysIleLeuAla-----Glu : 301 ...|||...||||||||| :::... |||:::||||||#####||| SerMetIleLysAsnIleGluAsnPhePheGlyThrTyrLysCysValLeuAla#####Glu 4640 : tcgatgataaaaaatatcgaaaatttcttcggaacgtataaatgtgtgcttgctTCTAGGAA : 4581 302 : TrpTyrGlyArgAspValArgValLeuGlyAlaTyrAlaPheSerValThrCysIleThrLe : 322 ||| ! !!!!|||!.!!:!:!!||| !.!!||| ! ! !!!:!!..!..!:!!..! TrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValValSe 4580 : TGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTGTTtc : 4518 323 : uAsnThrPheLeuIleCysTyrIleGlyGluValLeuSerGluLys >>>> Target In : 338 ||||||||||||||||||||||||.!!!!: !|||!!!|||:!! 92 b rAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4517 : taatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt.............. : 4468 339 : tron 1 >>>> CysLysLysIleSerAsnMetIleTyrMetThrAsnTrpTyrArgLeuS : 354 p ||| !|||:!!.!!.!.:!!:!!|||||||||:!!|||||| !||| ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuP 4467 : ...........agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGC : 4330 355 : erGluLysAspIleLeuAsnLeuIleMetIleMetIleArgSerGlyMetGluTyrLysMet : 374 !!:!!!:! ||||||:!!||||||:!!|||!!:! !||||||..!:!!! !:!!!!: roGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIle 4329 : CACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATC : 4270 375 : ThrAlaGlyLysIleIleAsnMetSerValValThrPheGlyAsn >>>> Target Int : 390 |||||||||||||||...:::||||||:!! !|||||||||:!! 89 bp ThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4269 : ACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt............... : 4220 391 : ron 2 >>>> IleIleLysThrIleLeuAlaTyrLeuAsnIleLeuArgGlnMetThr : 405 :!!:!!|||||| !!!!||||||||||||!!:||| !!||||||:!! ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMetSer 4219 : ..........agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAAATGTCC : 4086 vulgar: AmOr43 282 405 . LHQN01027980.1 4640 4085 - 240 M 18 54 F 0 5 M 37 111 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4086 4640 240 - . gene_id 1 ; sequence AmOr43 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4640 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4640 . - . insertions 0 ; deletions 0 ; frameshifts 5 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4223 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 2 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 2 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 1 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4086 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4086 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4086 4640 240 - . alignment_id 1 ; Query AmOr43 ; Align 4641 283 54 ; Align 4582 301 111 ; Align 4379 338 156 ; Align 4134 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 239 Query range: 0 -> 158 Target range: 495 -> 27 1 : MetMetAlaAspAspIleAlaAlaIleGlnLysLysPheGlySerLeuAsnGluTyrSerIleG : 22 |||! !||| ! ! !!.!!.!! !:!!! !!..!. !:!! !!:!!!:||||||:!!| MetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuG 495 : ATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCC : 432 23 : lnLeuAsnArgTrpPheSerLysThrIleGlyValTrpProLeuProSerSerThrSerLysLe : 43 ||! !||||||||| ! !|||!:!||||||..!||| |||..!! !:!!|||!!.|| lnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrp------ProGlnPheSerSerAsnLe 431 : AGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGG------CCACAGTTCTCGTCGAACCT : 375 44 : uGluLysIleMetThrLysIleLeuIlePheLeuCysTrpIleIleAlaLeuPheValIleIle : 64 ||||!:!! !!!::!!::!||||||! ! ! :!!|||!::! ! ! !|||||| !|||||| uGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIle 374 : CGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATC : 312 65 : SerSerLeuLeuTyrPheAlaLeuValLysGluAspIleIleSerLysLeuLysThrLeuGlyP : 86 !!!!!! !|||:!!.!. !|||! !|||! ! !.!! !!!!|||:!!|||! !||||||| ProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyP 311 : CCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTC : 246 87 : roIleSerTyrCysPheGlyGlyGlyLeuAsnTyrAlaValLeuLeuLeuArgLysAsnAspIl : 107 ||:!:|||:!!!! ! ! !! !:!!!:!|||.!!:!!||||||||||||:::!!. !|| roLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIl 245 : CGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCAT : 183 108 : eArgTyrCysIleAspHisIleGluThrAspTrpLysAlaIleThrArgThrGlyAspArgGln : 128 |!.!:!!! !:!!:!!|||!!:||||||||||||!:!.!!! |||||| :::::: eHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGlu 182 : ACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaa : 120 129 : ValMetPheLysAsnAlaLysIleGlyArgIleIleSerGlyCysValAlaGlyPheLeuGlnL : 150 ||||||.!.||| !!||||||.!!.!!||| ! :!! !! ! !||| !|||:!!!!. ValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisG 119 : gtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACG : 54 151 : euSerThrIleSerPheCysThrVal : 158 !.!!! !:!!.!!!:!|||..!:!! lyGlyIleLeuGlyTyrCysValMet 53 : GTGGTATACTTGGATATTGTGTTATG : 28 vulgar: AmOr43 0 158 . LHQN01027980.1 495 27 - 239 M 34 102 G 2 0 M 122 366 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 28 495 239 - . gene_id 2 ; sequence AmOr43 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 28 495 . - . LHQN01027980.1 exonerate:protein2genome:local exon 28 495 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 28 495 239 - . alignment_id 2 ; Query AmOr43 ; Align 496 1 102 ; Align 394 37 366 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 339 -> 390 Target range: 1981 -> 1822 340 : LysIleSerAsnMetIleTyrMetThrAsnTrpTyrArgLeuSerGluLysAspIleLeuAs : 360 |||:!!.!!...! :!:|||||||||.!.|||||||||||||||:!!||| ! !|||.. LysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGl 1981 : AAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGG : 1921 361 : nLeuIleMetIleMetIleArgSerGlyMetGluTyrLysMetThrAlaGlyLysIleIle< : 381 !!!!:!!||||||!!: !||||||.!!|||! ! |||!!:||||||||||||.!!:!! yPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheValT 1920 : TTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTAT : 1858 382 : -><->AsnMetSerValValThrPheGlyAsnIle : 390 !.. !||||||!.!|||||||||:!!:!: yr***ThrSerSerValAlaThrPheGlyAspVal 1857 : ACTGAACATCGTCTGTCGCAACATTTGGCGATGTG : 1823 vulgar: AmOr43 339 390 . LHQN01027980.1 1981 1822 - 120 M 41 123 G 0 6 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1823 1981 120 - . gene_id 3 ; sequence AmOr43 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1823 1981 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1823 1981 . - . insertions 6 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1823 1981 120 - . alignment_id 3 ; Query AmOr43 ; Align 1982 340 123 ; Align 1853 381 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 244 Query range: 299 -> 404 Target range: 4581 -> 4085 300 : GluTrpSerGlyHisAspIleLysValLeuSerAlaTyrSerPheThrIleThrAsnIleIl : 320 ||||||!!!! ! !||| !:!!:!!|||! !.!!|||! ! ! |||:!!..! !:!!:! GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValVa 4581 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTGT : 4521 321 : eLeuSerLeuPheLeuIleCysTyrIleSerGluValLeuAsnGluLys >>>> Target : 337 ! ::: |||||||||||||||||||||!!: !|||!..|||:!! 9 lSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4520 : TtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt........... : 4468 338 : Intron 1 >>>> CysLysGluIleGlyAsnIleValTyrMetThrAsnTrpTyrArgL : 352 2 bp ||| !:!!:!!|||.!.:!:||||||||||||:!!|||||| !| ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrL 4467 : ..............agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATC : 4333 353 : euSerAspLysAspIleLeuAsnLeuIleMetIleIleIleArgSerSerValGluTyrLys : 372 || !!.!.!:! ||||||:!!||||||:!!||||||! !||||||!:!|||! !:!! euProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGlu 4332 : TGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAA : 4273 373 : MetThrAlaGlyLysIleIleAspMetSerValIleThrPheSerAsn >>>> Target : 389 !!:|||||||||||||||... ||||||:!! !||||||.!!:!! 89 IleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4272 : ATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt............ : 4220 390 : Intron 2 >>>> IleIleLysThrIlePheAlaTyrLeuAsnIleLeuArgGlnValTh : 404 bp :!!:!!|||||| !|||||||||||||||!!:||| !!|||:!!:! ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMetSe 4219 : .............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAAATGTC : 4088 405 : r : 404 ! r 4087 : C : 4086 vulgar: AmOr41 299 404 . LHQN01027980.1 4581 4085 - 244 M 37 111 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4086 4581 244 - . gene_id 1 ; sequence AmOr41 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4581 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4581 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4223 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 2 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 2 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 1 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4086 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4086 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4086 4581 244 - . alignment_id 1 ; Query AmOr41 ; Align 4582 300 111 ; Align 4379 337 156 ; Align 4134 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 338 -> 379 Target range: 1981 -> 1858 339 : GluIleGlyAsnIleValTyrMetThrAsnTrpTyrArgLeuSerAspLysAspIleLeuAs : 359 :!!:!!|||...! !||||||||||||.!.|||||||||||||||.!.||| ! !|||.. LysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGl 1981 : AAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGG : 1921 360 : nLeuIleMetIleIleIleArgSerSerValGluTyrLysMetThrAlaGlyLysIleIle : 379 !!!!:!!||||||||| !|||||||||:!!! ! |||!!:||||||||||||.!!:!! yPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheVal 1920 : TTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTA : 1859 vulgar: AmOr41 338 379 . LHQN01027980.1 1981 1858 - 120 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1859 1981 120 - . gene_id 2 ; sequence AmOr41 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1859 1981 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1859 1981 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1859 1981 120 - . alignment_id 2 ; Query AmOr41 ; Align 1982 339 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 240 Query range: 0 -> 154 Target range: 495 -> 36 1 : MetGluLysAsnArgSerIleIleGlyHisAspAspTyrGluArgAsnValAsnLeuSerIleA : 22 |||...!!.:!!!:!!!!:!::!! !.!. !:!! !!:! !:!!! !|||:!!! MetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuG 495 : ATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCC : 432 23 : rgTrpAsnArgPheLeuLeuLysSerLeuGlyThrTrpProAsnLeuArgGluSerArgIleGl : 43 :!|||||||||!:: !:!!||||||:!!||||||||||||.!.!!! ..!|||!.!:!!! lnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPhe---SerSerAsnLeuGl 431 : AGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTC---TCGTCGAACCTCGA : 372 44 : yLysCysTyrSerValLeuIleGlyIleValCysTyrGlyLeuIleSerPheMetLeuThrSer : 64 !!:! ! !||| !:!!:!!..!:!::!!|||||| ! !||| !||| !:!!! ! !! uArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIlePro 371 : GAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCT : 309 65 : SerAsnMetPheLeuValValGluValLysAspThrTyrAsnArgIleLysMetIleGlyProL : 86 !!!::::!! !|||:!!:!!||| ! ! ! !|||!..!:!:!:|||!!::!!||||||| CysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyProL 308 : TGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGT : 243 87 : euSerPhePheAlaMetThrLeuIleLysTyrTyrPheLeuThrPheHisGluGluAsnIleAr : 107 ||||| !!::!.!.!. !:!!|||!..||| !.!.||| !.!.!.....:!!!.!|||!. euSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHi 242 : TGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACA : 180 108 : gLysGlyIleGluHisIleGluTrpAspTrpLysAsnValLysHisGluGluAspLysArgIle : 128 ! ! !:!!.!.|||!!:||| ||||||!:!!....! ...:::||| |||...::: sHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluVal 179 : TCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtc : 117 129 : MetIleGluTyrAlaAsnTyrGlyLysLysLeuAlaLeuIleSerIlePhePheValTyrSerA : 150 |||:!::!!||||||!!.!:!.!!::! ! !|||:!!.!!!!! .!!|||:!!:!!.!!! MetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyG 116 : ATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTG : 51 151 : laPheValPheTyr : 154 .!.!.:!! ||| lyIleLeuGlyTyr 50 : GTATACTTGGATAT : 37 vulgar: AmOr30 0 154 . LHQN01027980.1 495 36 - 240 M 37 111 G 1 0 M 116 348 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 37 495 240 - . gene_id 1 ; sequence AmOr30 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 37 495 . - . LHQN01027980.1 exonerate:protein2genome:local exon 37 495 . - . insertions 0 ; deletions 1 LHQN01027980.1 exonerate:protein2genome:local similarity 37 495 240 - . alignment_id 1 ; Query AmOr30 ; Align 496 1 111 ; Align 385 39 348 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 174 Query range: 334 -> 399 Target range: 4381 -> 4097 335 : GlnCysGlnLysValGlyGluMetThrTyrMetIleGluTrpTyrArgLeuThrGlyLysLy : 355 |||||| !||||||||||||:!!..!||||||! !!!:|||||| !||| !! !!:!!: GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 356 : sLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleLysPheThrAlaGlyA : 376 !! ||| !! :!!|||||||||.!! |||||| ! !:!!:!!.!!|||||||||. gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 377 : snMetValGluLeuSerIleTyrThrPheSerAsp >>>> Target Intron 1 >>>> : 388 ..::: ...:::|||:!!|||||||||.!!||| 89 bp ysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATgt......................... : 4220 389 : ValValLysThrSerValAlaPheLeuAsnMetLeu : 399 ||||||||||||.!! !!|||!:!|||||||||||| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeu 4219 : agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTT : 4098 vulgar: AmOr30 334 399 . LHQN01027980.1 4381 4097 - 174 M 53 159 5 0 2 I 0 85 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4098 4381 174 - . gene_id 2 ; sequence AmOr30 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4223 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4098 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4098 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4098 4381 174 - . alignment_id 2 ; Query AmOr30 ; Align 4382 335 159 ; Align 4134 388 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 334 -> 378 Target range: 1990 -> 1858 335 : GlnCysGlnLysValGlyGluMetThrTyrMetIleGluTrpTyrArgLeuThrGlyLysLy : 355 :!! ! |||||||||! !! ..!||||||! !|||||||||||||||:!! !|||! GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysTh 1990 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAAC : 1930 356 : sLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleLysPheThrAlaGlyA : 376 ||| !!! !|||:!!||||||:!!! |||!:!! ! !||||||.!!|||||||||! rAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyL 1929 : TGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAA : 1867 377 : snMetVal : 378 !..!.||| ysPheVal 1866 : AATTCGTA : 1859 vulgar: AmOr30 334 378 . LHQN01027980.1 1990 1858 - 100 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1859 1990 100 - . gene_id 3 ; sequence AmOr30 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1859 1990 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1859 1990 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1859 1990 100 - . alignment_id 3 ; Query AmOr30 ; Align 1991 335 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 181 Query range: 13 -> 157 Target range: 468 -> 36 14 : AsnLeuAsnTyrGluLysAspIleValTyrValThrLysHisAsnLysTrpIleLeuAsnSerI : 35 .!.:!!||| ..!! !! !||| ! !:!! |||::!||| :!!!!.|||| GluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerI 468 : GAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCA : 405 36 : leGlyIleTrpProThrValLeuLysGlyIleAspGluTyrLeuProLysIleAlaIleAlaLe : 56 |||||! !|||||| ! !!! !..!..!:!!!!:..! !!:!! !!::!||| !! !!.!:! leGlyThrTrpProGlnPheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIl 404 : TAGGCACATGGCCACAGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGAT : 342 57 : uSerAsnLeuValLeuSerPheThrValIleGlnCysValLeuHisIleLeuLeuGluGlnLys : 77 !!!! !! !!.!:!! !|||:!!:!!|||! ||| !||||||:!!:!!||||||:!! ! eCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGly 341 : CTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGG : 279 78 : AspProIleLeuArgLeuLysIleLeuGlyLeuThrPhePheSerPheIleSerLeuMetLysT : 99 ! ! ! !!:!:!!||||||||||||! ! ! ! !!!! ! .!!!!!:!!!!:!..| ThrPheTyrThrLysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerT 278 : ACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTT : 213 100 : yrTrpValLeuThrMetArgLysProLysIleLysLeuCysIleGluGlnIleGlnHisAspTr : 120 || :!!||| !:!!|||::: !! ||| ! ! !! !:!!.!.!!.!!::!! !||||| yrThrMetLeuLeuLeuArgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTr 212 : ACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTG : 150 121 : pLysGlnValGluPheGluArgAspArgLysLeuMetLeuLysTyrGlyIleIleGlyArgAsn : 141 |!:! !..! :::... :::::::::||||||||||||!.!! !.!!.!!||| !! pArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyr 149 : GAGAACGACGacgagaaaggagaagaaagaagtcATGCTGAAGTACGCAAAATTTAGTCGATAC : 87 142 : LeuSerMetTyrSerIleValPheMetTyrSerGlyGlyIleIleTyr : 157 !:!!!!:!:!!!! :!!|||!!::!!.!!||| !:!! !||| AlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleLeuGlyTyr 86 : GCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTATACTTGGATAT : 37 vulgar: AmOr58 13 157 . LHQN01027980.1 468 36 - 181 M 144 432 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 37 468 181 - . gene_id 1 ; sequence AmOr58 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 37 468 . - . LHQN01027980.1 exonerate:protein2genome:local exon 37 468 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 37 468 181 - . alignment_id 1 ; Query AmOr58 ; Align 469 14 432 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 485 Query range: 15 -> 276 Target range: 1076 -> 299 16 : SerGluTyrSerIleLysLeuSerArgTrpTyrLeuLysProLeuGlyAlaTrpProAlaSe : 36 |||!!:||||||:!!:!!! !!:!|||||| :!!||| !:!!|||||||||||| !|| SerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSe 1076 : AGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTC : 1016 37 : rSerSerThrThrLysMetGluArgIleIleSerGlnIleLeuIleValIleCysTrpCysI : 57 ||||||| !!.:!:|||||||||||||||!:!||||||! !|||||||||!:: ! rSerSer------AsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrA 1015 : CTCGTCG------AATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCG : 959 58 : leIleLeuPheThrValIleProGlyIleLeuTyrIleLeuPheValLysGlnAspIleTyr : 77 !:!!|||||||||:!!|||||| !! |||:!!:!!:!!.!.! !|||:!! !.!!||| laValLeuPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyr 958 : CAGTACTATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTAC : 899 78 : ValLysLeuLysIlePheGlyProLeuSerHisTrpCysIleAspGlyPheAsnTyrAlaIl : 98 ..!|||:!!||||||.!!|||||||||||||||||| .!! ! !.!!!:!|||.!!!! ThrLysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMe 898 : ACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCAT : 836 99 : eLeuLeuLeuArgLysAsnAspIleLeuHisCysIleGluHisLeuArgAlaAspTrpLysL : 119 :||||||||||||:::!!. !|||! !|||! !.!!.!.|||:!!..!.!!||||||!:! tLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgT 835 : GCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAA : 773 120 : euIleThrArgThrGlnAspGlnGlnValMetLeuArgAsnAlaLysMetGlyArgTyrIle : 139 !! ! ||| ::: :::::::::||||||!:! !!||||||.!..!!|||||| hrThrMetArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAla 772 : CGACGAtgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCG : 713 140 : AlaAlaPheCysAlaIlePheMetGlnValIleIlePhePheThrCysPheIleLeuGlyIl : 160 ||| !! !|||.!!||||||!!:!!.! ! !|||.!! !||| !!!!: !!.!.! AlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPh 712 : GCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTT : 650 161 : ePheLysArgSerIleHisIleAspAsnLysThrValGluLeuTyrAsnLeuProCysProA : 181 ! !! !! ! !:!! :!!! |||:!!|||:!! ||| ! ||||||! ||| eThrThrMetValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProM 649 : CACCACGATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAA : 587 182 : laTyrLysIleProPheAspThrAspPro<->ThrIleHisAspIleMetLeuGlyThrGln : 200 !|||||| ! !.!! ..!||| !! |||!!::!!!!:|||:!:||| !:!!||| etTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGln 586 : TGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAG : 527 201 : PheLeuSerAlaPheValValSerSerSerAlaSerAlaSerPheThrLeuAlaThrIlePh : 221 |||||||||!.!|||:!!!.!!:!!!!||||||! !::! !.!.!:!|||.!!!:! !.! PheLeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLe 526 : TTTCTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCT : 464 222 : eThrCysHisValLeuGlyGlnLeuAsnIleMetMetIleTrpIleAsnGluPheValAspA : 242 .|||! |||!.!! !|||||||||..!:!::!:|||:!:! !|||.!.!!:||||||..! uThrSerHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerA 463 : AACATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTG : 401 243 : rgLeuGlnArgLysGluAsnLysAspAsnHisIleAsnLysIleGlyValIleValGluHis : 262 ! !::!|||!:! ...||||||:!!|||.!!:!!:!!||| !..!||||||||| ! spAlaArgArgArg---GlyLysAspAspHisPheAspGluIleProThrIleValGluLys 400 : ATGCGAGACGCAGA---GGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAA : 344 263 : HisLeuArgIleLeuSerLeuIleAlaArgIleGluArgIle : 276 |||||||||:!:|||!.!! !:!!..! !:!:!!: !||| HisLeuArgValLeuLys***ValCysLeuLeuAspLeuIle 343 : CATTTGAGAGTGTTGAAGTAAGTATGTTTGTTGGATTTGATT : 300 vulgar: AmOr50 15 276 . LHQN01028641.1 1076 299 - 485 M 23 69 G 2 0 M 150 450 G 0 3 M 56 168 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 300 1076 485 - . gene_id 1 ; sequence AmOr50 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 300 1076 . - . LHQN01028641.1 exonerate:protein2genome:local exon 300 1076 . - . insertions 3 ; deletions 3 LHQN01028641.1 exonerate:protein2genome:local similarity 300 1076 485 - . alignment_id 1 ; Query AmOr50 ; Align 1077 16 69 ; Align 1008 41 450 ; Align 555 191 168 ; Align 387 248 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 746 Query range: 1 -> 299 Target range: 1118 -> 162 2 : ThrSerLysSerValIleSerGluGluSerPheAspSerLeuCysAspTyrSerLeuGlnLe : 22 !.!..!|||!!!|||:!!!!!||| !:!.!. !:!! ! !!|||||||||||||||! AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTr 1118 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTG : 1058 23 : uAsnArgTrpLeuLeuLysProIleGlyAlaTrpProSerSerSerSerSerSerLysLeuG : 43 !||||||||| !:!!||| !|||||||||||||||..!|||||||||!:! |||| pAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSerSerAsn------LeuG 1057 : GAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCGTCGAAT------CTCG : 1001 44 : luArgIleValSerPhePheLeuIleValLeuCysTyrGlyPheIleLeuPheThrValIle : 63 ||||||||:!!||| .!.|||! !|||:!!|||||| ! :!!|||||||||:!!||| luArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIle 1000 : AGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATC : 941 64 : ProSerLeuPheHisIleValLeuGluAspGluAsnLeuHisMetLysLeuLysValPheGl : 84 |||!!!! !.!.|||:!!:!!|||||| ! |||!.!!!!:!!! !|||:!!|||:!!.!!|| ProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGl 940 : CCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGG : 878 85 : yProLeuSerHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuGlnAsnLysG : 105 |||||||||||||||| ! .!! !! !|||!:!||||||! !|||||||||!:!..!||| yProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysT 877 : TCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAA : 815 106 : luIleGlnTyrCysValGluHisMetGlnThrAspTrpLysIleValAsnArgAlaLysAsp : 125 |||!:::!!! ! !!.!.||||||:!!|||||||||!:!! ..!! ||| ::: hrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLys 814 : CCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaag : 755 126 : GlnGlnValMetMetLysTyrAlaLysIleGlyArgTyrIleAlaAlaLeuCysAlaIlePh : 146 :::::::::|||:!!||||||||||||.!!.!!|||||| ||| !! !|||.!!||||| LysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePh 754 : aaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTT : 692 147 : eMetGlnThrGlyValLeuThrTyrCysValValThrAlaPheSerThrArgIleIleGluI : 167 |!!:!!. !|||:!!||| !|||||||||:!!|||||||||!!!|||! !:!!:!!! !: eIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValV 691 : CATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGG : 629 168 : leGlyAsnGluThrArgIleValHisMetLeuProCysProValTyrLysGluLeuIleSer : 187 !!||||||||||||! !|||:!!!.!:!!||||||! |||:!!||||||! !|||:!! !! alGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuPro 628 : TTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCA : 569 188 : IleAspThrSerProThrAsnGluIleValLeuIleSerGlnPheValSerGlyPheIleVa : 208 :!!||||||!:! !!! !|||||||||||||||:!:|||||||||:!!||||||||||||!. ValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAl 568 : GTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGC : 506 209 : lAsnSerIleAlaValGlyAlaIleSerIleGlyAlaValPheThrAlaHisAlaCysGlyG : 229 !|||!!!! !|||:!!.!!!.!||||||:!! !::!!.!.!.|||:!!||||||! !|||| aAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyG 505 : GAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCC : 443 230 : lnLeuThrIleIleLysArgTrpIleArgGluTyrIleAsnArgSerLysAspAsnAsnLys : 249 ||||| !:!::!!! ! !! !|||..!!!:!:!:!:!:! !:!!!:! !!.....||| lnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLys 442 : AGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAG : 383 250 : AsnValValIleAsnGluIleGlyGluIleValGluTyrHisLeuArgIleLeu{As} >> : 268 :!!! ! !.!!:!!|||||| ! !||||||||| ! |||||||||:!:|||{||} AspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeu{As}++ 382 : GACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG{AA}gt.. : 322 269 : >> Target Intron 1 >>>> {n}PheIleGluGlyIleGluAspValLeuAsnArgP : 280 68 bp {|}||||||..! !!||||||! :!!:!!|||!:! ++{n}PheIleSerArgIleGluAlaMetIleAsnLysA 321 : .......................ag{C}TTCATATCGCGCATAGAGGCAATGATAAACAAAG : 222 281 : heCysPheMetGluLeuPheLysSerThrLeuAspIleSerMetLeuGlyTyrTyrIle : 299 ||||||:!!|||||| !:!!!!|||:!!! !|||!!!:!:||||||||||||||| laCysPheLeuGluLeuThrArgCysThrIleAlaIleCysValLeuGlyTyrTyrIle 221 : CGTGTTTCCTGGAGTTAACGAGGTGCACGATAGCTATATGCGTACTTGGATATTATATA : 163 vulgar: AmOr31 1 299 . LHQN01028641.1 1118 162 - 746 M 38 114 G 2 0 M 226 678 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 163 1118 746 - . gene_id 1 ; sequence AmOr31 ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1118 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1118 . - . insertions 0 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 163 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 163 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 163 1118 746 - . alignment_id 1 ; Query AmOr31 ; Align 1119 2 114 ; Align 1005 42 678 ; Align 256 269 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 258 Query range: 23 -> 272 Target range: 1070 -> 323 24 : TyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpProLeuIleTyrAs : 44 |||!:!|||||| ! !!:!||| !:!!||| !||||||!.!|||||| .! TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpPro---------Gl 1070 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCA---------CA : 1019 45 : nGlnThrSerArgPheGluGlnLeuIleSerIleIleLeuMetGlyThrCysPheSerSerL : 65 ....:!!|||!.!.!!|||::!:!!|||||| !||||||! ! !! !|||!:!!!!:!!: nSerSerSerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaV 1018 : GTCCTCGTCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAG : 956 66 : euLeuPheIleIleLeuProSerGlyHisHisIleLeuPheValGluLysAsnLeuHisMet : 85 !!||||||! |||:!!|||!!!..!! |||:!!:!!.!.! !:!!:!!!.!!!!:!!! ! alLeuPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThr 955 : TACTATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACG : 896 86 : LysValLysAlaPheGlyProAlaGlyPheCysLeuSerSerThrIleLysTyrCysTyrLe : 106 ||||||||| !.!!|||||| !.!! !!! :!!! !!!!! !|||!..||| ! || LysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLe 895 : AAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCT : 833 107 : uGlyLeuLysGlySerSerPheGluArgCysIleGluHisMetArgLysAspTrpMetMetV : 127 | !|||::! !!!.!!!!.!....!.!! !.!!.!.||||||..!! ||||||! ! !. uLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrT 832 : GTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGA : 770 128 : alGlnAspProAsnHisArgThrIleMetLeuLysTyrAlaThrIleSerArgLysLeuIle : 147 .!... ... ::: ||||||||||||||||||! !.!!|||||| ! ! hrMetArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAla 769 : CGAtgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCG : 710 148 : ThrMetCysAlaValPheLeuTyrThrGlyGlyMetSerTyrHisThrIleMetGlnPheLe : 168 ! ! |||.!!:!!|||:!!:!! !||| !:!:.!!||| !..!!!:! !||| IleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheTh 709 : ATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCAC : 647 169 : uSerLysGlyLysAsnLysAspAsnTyrThr<-><->IleArgProLeuProTyrIleGlyT : 187 !!!!! !! ! ! ||| ! ||| :!:||| !||||||! ! !| rThrMetValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetT 646 : CACGATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGT : 584 188 : yrAspProPhePheAspThrGlnSerSerProThrTyrGluIleValTyrCysIleHisCys : 207 || ! !.!!.!! ..!.!.!!!!:! !!! ! !!||||||||| !! !!!.! ! yrLysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPhe 583 : ACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTT : 524 208 : PheThrAlaMetIleMetTyrSerIleSerThrValAlaTyrSerLeuThrThrIlePheVa : 228 .!!:!!!.!.!.||| ! !!!!!! !:!!! ! !!.! |||||||||!:! !.!... LeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuTh 523 : CTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAAC : 461 229 : lThrHisIleCysGlyGlnIleGlnValGlnIleAlaArgLeuGlnAspLeuValGluSerL : 249 !:!!||| ! !||||||:!: ||| !!: ! !:!!:!!|||!!!|||.....! rSerHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspA 460 : ATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATG : 398 250 : ysGluLysArgLysTyrLysAsp<->CysAspProPheAlaLeuIleValHisAspHisVal : 268 !..!:::||| ! ! ! ||| ! !||| !.!. !! !||||||.!. ! |||:!! laArgArgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHisLeu 397 : CGAGACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTG : 338 269 : GluValLeuArg : 272 ..!||||||!:! ArgValLeuLys 337 : AGAGTGTTGAAG : 324 vulgar: AmOr53 23 272 . LHQN01028641.1 1070 323 - 258 M 17 51 G 3 0 M 135 405 G 0 6 M 78 234 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 324 1070 258 - . gene_id 1 ; sequence AmOr53 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 324 1070 . - . LHQN01028641.1 exonerate:protein2genome:local exon 324 1070 . - . insertions 9 ; deletions 3 LHQN01028641.1 exonerate:protein2genome:local similarity 324 1070 258 - . alignment_id 1 ; Query AmOr53 ; Align 1071 24 51 ; Align 1020 44 405 ; Align 609 179 234 ; Align 372 257 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 302 Query range: 3 -> 271 Target range: 1130 -> 323 4 : IleThrLeuAsnGluSerAspCysLysAlaArgAsnLeuLysTyrLysGluAspIleAlaTy : 24 :!!|||:!!!:!.!...! ! ! !!.!! !.!.:!!!!. ! ! ..!! !! !|| ValThrMetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTy 1130 : GTCACGATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTA : 1070 25 : rValThrLysHisAsnLysTrpIleLeuLysSerIleGlyIleTrpProSerIlePheLysA : 45 | ! !:!! |||::!||| :!!|||||||||||| !||||||..! !! ..!: rSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSerSerA 1069 : CAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCGTCGA : 1007 46 : spValSerLysPheLeuProLysIleMetPheGlyLeuCysAsnPheValLeuPhePheAla : 65 !!:!!..!!:!.!!:!! !!::!|||:!! !! !:!!||| !! !!.!:!!.!.|||.!! snLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThr 1006 : ATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACG : 947 66 : IleIleProCysIleLeuTyrIleValIleGluGluAsnAspThrMetIleArgPheLysLe : 86 |||||||||||| |||:!!:!!:!!:!:|||:!!.!. ! ! ! !:! ! |||:! IleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIl 946 : ATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAAT : 884 87 : uPheGlyLeuLeuSerPheCysLeuValAlaLeuIleLysTyrTrpThrLeuLeuTyrArgL : 107 !.!!|||! !|||||| !!! :!! !!..!:!!|||!..||| ! !|||||| |||: eLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgA 883 : ACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGAC : 821 108 : ysSerArgIleLysAsnCysValGluGlnIleTrpIleAspTrpGluGlnValGluLeuTyr : 127 ::!.!! !|||::::!!! ! !!.!.!!.!!: !! !||||||..! !..! rgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLys 820 : GTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaag : 761 128 : GluAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuMetIleIleCysAl : 148 ||| :::|||:::||||||||||||!.!:!!.!..!!||| !! ! !||| !|||.! GluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysTh 760 : gagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTAC : 698 149 : aMetPheThrTyrThrGlyGlyThrIlePheHisThrIleLeuGlnTyrLysValGlyThrP : 169 !!!:|||! !:!! !||| ! ! !!:! !..!!!: ! !!:!! ..! !..! rIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValV 697 : GATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTG : 635 170 : heIleAspGluTyrAsnArgThrIleLysProValIle<->TyrProThrTyrAsnGlyLeu : 188 !!:!:! !! ! !!.!.! !! !||| !! !|||:!: ! |||! !|||!!.|||||| alValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeu 634 : TCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTC : 575 189 : PheAsnValGlnArgSerProIleTyrGluPheValTyrIleLeuHisCysMetCysGlyTy : 209 .!! |||.!.! !!:! !!!!: !!|||.!!||| !:!:! !!!.! !:!:! !|||!: LeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPh 574 : CTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATT : 512 210 : rValMetHisSerValThrAlaGlyAlaCysGlyLeuThrAlaLeuPheAlaThrHisAlaC : 230 !:!! !:!!!!! !.!! !.!!!.! .!!||||||::! !.!..!!:!!||||||! eIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaS 511 : TATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGT : 449 231 : ysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeuIleHisGlyLysTyrSerLys : 250 !||||||:!:! !:!:|||!!: ! !:!!.!.|||!!!:!: !! ! ! !!!:! erGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArg 448 : CTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGA : 389 251 : GluLysIleAsnLeuAsnAlaArgPheThrLysIleIleGluHisHisLeuArgIleLeuAr : 271 ! !||| !:!!! ! !! !..!.!. !!! !|||:!:||| ! |||||||||:!:|||!: GlyLysAspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeuLy 388 : GGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTGAA : 326 272 : g : 271 ! s 325 : G : 324 vulgar: AmOr59 3 271 . LHQN01028641.1 1130 323 - 302 M 178 534 G 0 3 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 324 1130 302 - . gene_id 1 ; sequence AmOr59 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 324 1130 . - . LHQN01028641.1 exonerate:protein2genome:local exon 324 1130 . - . insertions 3 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 324 1130 302 - . alignment_id 1 ; Query AmOr59 ; Align 1131 4 534 ; Align 594 182 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 590 Query range: 15 -> 299 Target range: 1076 -> 156 16 : SerGluTyrSerIleGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProAlaSe : 36 |||!!:||||||:!!|||!::||||||||| :!!||| !||||||||||||||| !|| SerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSe 1076 : AGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTC : 1016 37 : rPheTyrLysSerArgIleGluLysIleValSerLysIleLeuIleValIleCysTrpIleS : 57 | ..!|||!.!:!!|||!:!|||:!!|||::!||||||! !|||||||||!::! !: r------SerSerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrA 1015 : C------TCGTCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCG : 959 58 : erSerLeuPheThrLeuIleProGlyValLeuHisPhePheLeuGluLysGluAspIleTyr : 77 !! !|||||||||:!!|||||| !! !|||||| ! .!.|||||||||||| !.!!||| laValLeuPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyr 958 : CAGTACTATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTAC : 899 78 : ValLysLeuLysIleLeuGlyProLeuThrHisTrpLeuValGlyGlyPheAsnTyrAlaVa : 98 ..!|||:!!||||||||||||||||||!:!||||||:!! !! !! !.!!!:!|||.!!:! ThrLysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMe 898 : ACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCAT : 836 99 : lLeuLeuLeuArgLysAspAspIleTyrTyrCysIleLysGlnIleCysAlaAspTrpAsnI : 119 !||||||||||||::: ! !||| !:!!! !.!!!!.!!.!!: .!!||||||!..! tLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgT 835 : GCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAA : 773 120 : leIleThrLysLysGlnAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrVal : 139 ! ! :::|||::: :::::::::||||||||| !!||||||.!!.!!||||||!.! hrThrMetArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAla 772 : CGACGAtgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCG : 713 140 : AlaValPheCysThrValPheLeuGlnGlyGlyValPheCysThrCysLeuAlaLeuGlyAl : 160 |||:!!! !||||||:!!|||:!!!!.||||||:!!.!! ! !|||:!! ! !!.! AlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPh 712 : GCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTT : 650 161 : aPheLysLysThrIleLysValAspAsnGluThrValAsnIleTyrAsnLeuProCysProA : 181 ! !! !! !..!:!! !|||! |||||||||:!!! !:!: ! ||||||! ||| eThrThrMetValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProM 649 : CACCACGATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAA : 587 182 : laTyrAsn<-><->MetProValAspThrAsnProThrHisAspIleIleLeuGlyThrGln : 199 !|||!!. :!:||||||||||||||| !!! !:!!!!:|||:!!||| !:!!||| etTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGln 586 : TGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAG : 527 200 : LeuLeuSerAlaPheIleCysSerSerSerThrAlaGlyAlaPheSerPheValAlaIleCy : 220 !!!||||||!.!||||||...!:!!!!|||.!! !.!!!.!.!.|||.!!..!::! ! PheLeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLe 526 : TTTCTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCT : 464 221 : sAlaSerHisAlaLeuGlyGlnLeuAsnLeuMetValIleTrpIleAsnGluTyrValAsnA : 241 .!!|||||||||! !|||||||||..!:!!:!::!!:!:! !|||.!.!!:!:!|||!:! uThrSerHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerA 463 : AACATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTG : 401 242 : rgProLysLysLeuAsnAsnAsnAlaTyrIleAsnLysIleGlyIleIleValGluHisHis : 261 ! !!!:!::: !...!!.:!!! !:!!.!!:!!:!!||| !! !||||||||| ! ||| spAlaArgArgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHis 400 : ATGCGAGACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACAT : 341 262 : LeuArgIleLeu{Se} >>>> Target Intron 1 >>>> {r}PheIleAlaArgVa : 271 ||||||:!:|||{!:} 68 bp {!}||||||:!!|||:! LeuArgValLeu{As}++ ++{n}PheIleSerArgIl 340 : TTGAGAGTGTTG{AA}gt.........................ag{C}TTCATATCGCGCAT : 243 272 : lGluHisValMetSerProIleCysPheMetGluMetIleLysCysMetValGlyIleCysM : 292 !||| :!!!!:!:! ! ||||||:!!|||:!:! !:!|||! !:!!!.!||||||: eGluAlaMetIleAsnLysAlaCysPheLeuGluLeuThrArgCysThrIleAlaIleCysV 242 : AGAGGCAATGATAAACAAAGCGTGTTTCCTGGAGTTAACGAGGTGCACGATAGCTATATGCG : 180 293 : etProIleTyrTyrIleLeuMet : 299 !:! ! !|||||||||!!!||| alLeuGlyTyrTyrIlePheMet 179 : TACTTGGATATTATATATTCATG : 157 vulgar: AmOr49 15 299 . LHQN01028641.1 1076 156 - 590 M 21 63 G 2 0 M 145 435 G 0 6 M 82 246 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 157 1076 590 - . gene_id 1 ; sequence AmOr49 ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1076 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1076 . - . insertions 6 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 157 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 157 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 157 1076 590 - . alignment_id 1 ; Query AmOr49 ; Align 1077 16 63 ; Align 1014 39 435 ; Align 573 184 246 ; Align 256 267 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 709 Query range: 15 -> 300 Target range: 1076 -> 162 16 : SerAsnTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSe : 36 |||:!!||||||:!!|||! !||||||||| :!!||| !|||||||||||||||! !|| SerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSe 1076 : AGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTC : 1016 37 : rProSerThrThrLysLeuGluLysIleIleSerIleValLeuIleIleCysCysTyrSerS : 57 | !!||| !!.||||||!:!||||||||| !:!!|||! !:!: !||||||!!!: rSerSer------AsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrA 1015 : CTCGTCG------AATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCG : 959 58 : erIleCysPheThrValIleProCysLeuLeuHisValMetLeuGluAspGluSerPheArg : 77 !!:!! ||||||:!!|||||||||! !|||||||||||||||||| ! |||!!!||| ! laValLeuPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyr 958 : CAGTACTATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTAC : 899 78 : AspLysLeuLysValLeuGlyProLeuSerHisTrpPheIleGlyAlaIleAsnTyrThrTh : 98 |||:!!|||:!!||||||||||||||||||||| ! .!! !! !|||!:!||||||! ThrLysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMe 898 : ACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCAT : 836 99 : rLeuLeuLeuArgSerLysGluIleArgTyrCysIleGluHisMetGlnArgAspTrpArgI : 119 !|||||||||||| !!||| ||||||:!!! !.!!.!.||||||:!!! !|||||||||! tLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgT 835 : GCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAA : 773 120 : leValThrArgThrGluAspGlnGlnIleMetMetLysHisAlaLysIleGlyArgTyrIle : 139 ..!! ||| ||| ::::::||||||:!!|||:!!||||||.!!.!!|||||| hrThrMetArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAla 772 : CGACGAtgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCG : 713 140 : AlaValPheSerAlaAlaPheMetGlnGlyGlyValLeuSerAsnCysAlaValThrAlaPh : 160 |||:!!! !!!!.!! !|||!!:!!.||||||:!!|||.!! !!|||!.!:!!|||||||| AlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPh 712 : GCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTT : 650 161 : eSerThrGlnThrIleGluIleGlyAsnValThrLysThrIleHisMetIleProCysThrA : 181 |!!!|||..!..!:!!! !:!!||||||! !|||! !! !:!:!.!:!!:!:|||! !! eThrThrMetValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProM 649 : CACCACGATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAA : 587 182 : laTyrLysLysLeuIleAlaValAspThrSerProThrAsnGluIleValIleAlaSerGln : 201 !|||||| !|||:!! !!|||||||||!:! !!! !||||||||||||:!! !|||||| etTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGln 586 : TGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAG : 527 202 : PheLeuSerGlyPheIleValAsnSerSerAlaValGlyAlaValSerIleAlaAlaValPh : 222 ||||||||||||||||||!.!|||!!!||||||:!!.!!!.!:!!|||:!!.!!::!!.!.! PheLeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLe 526 : TTTCTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCT : 464 223 : eAlaAlaHisAlaCysGlyGlnLeuSerLeuLeuMetValTrpIleArgGluPheValAspH : 243 ..!!:!!||||||! !|||||||||.!!:!!:!!|||:!!! !|||..!!!:||||||..! uThrSerHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerA 463 : AACATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTG : 401 244 : isSerLysLysIleHisAspLysAsnIleGlyLeuAsnLysIleGlyLysIleValArgHis : 263 !!:!!!:!::: ...! |||:!! ! !!!!:!!:!!||| !! !||||||..! ! spAlaArgArg---ArgGlyLysAspAspHisPheAspGluIleProThrIleValGluLys 400 : ATGCGAGACGC---AGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAA : 344 264 : HisLeuArgThrLeu{Se} >>>> Target Intron 1 >>>> {r}PheValThrGl : 273 |||||||||..!|||{!:} 68 bp {!}|||:!!:!! ! HisLeuArgValLeu{As}++ ++{n}PheIleSerAr 343 : CATTTGAGAGTGTTG{AA}gt.........................ag{C}TTCATATCGCG : 246 274 : yIleGluAsnValMetSerGlyIleCysPheMetGluLeuPheLysCysThrValAsnIleC : 294 !|||||| :!!!!:!:! ! ||||||:!!|||||| !:!||||||:!! !|||| gIleGluAlaMetIleAsnLysAlaCysPheLeuGluLeuThrArgCysThrIleAlaIleC 245 : CATAGAGGCAATGATAAACAAAGCGTGTTTCCTGGAGTTAACGAGGTGCACGATAGCTATAT : 183 295 : ysMetLeuGlyTyrTyrIle : 300 ||:!:||||||||||||||| ysValLeuGlyTyrTyrIle 182 : GCGTACTTGGATATTATATA : 163 vulgar: AmOr32 15 300 . LHQN01028641.1 1076 162 - 709 M 23 69 G 2 0 M 206 618 G 1 0 M 21 63 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 163 1076 709 - . gene_id 1 ; sequence AmOr32 ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1076 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1076 . - . insertions 0 ; deletions 3 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 163 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 163 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 163 1076 709 - . alignment_id 1 ; Query AmOr32 ; Align 1077 16 69 ; Align 1008 41 618 ; Align 390 248 63 ; Align 256 270 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 295 Query range: 2 -> 271 Target range: 1133 -> 323 3 : LeuThrThrLeuAsnLysAsnAsnCysLysValArgAsnLeuLysTyrLysGluAspIleAl : 23 :!!..!|||:!!!:!!!.:!!!!. ! !|||! !.!.:!!!!. ! ! ..!! !! ValValThrMetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAs 1133 : GTGGTCACGATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGA : 1073 24 : aTyrIleThrLysHisAsnLysTrpIleLeuLysSerIleGlyIleTrpProSerValLeuL : 44 !|||! ! !:!! |||::!||| :!!|||||||||||| !||||||..! !! !. pTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSerS 1072 : TTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCGT : 1010 45 : ysSerValSerArgPheLeuProLysIleMetPheGlyPheAsnAsnPheValLeuLeuPhe : 64 .!!:!:!!..!|||.!!:!! !!::!|||:!! !! !.!! ! !! !!.!:!!|||||| erAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPhe 1009 : CGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTC : 950 65 : SerValIleProCysIleLeuTyrIleValTyrGluGluLysAsnIleMetIleLysPheLy : 85 !!!:!!||||||||| |||:!!:!!:!! |||:!!:!!!.!.!! ! ||| ! || ThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLy 949 : ACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAA : 887 86 : sLeuValGlyLeuLeuSerPheSerLeuIleAlaLeuIleLysTyrTrpThrLeuThrTyrA : 106 |:!!:!!|||! !|||||| !!!!:!!.!!..!:!!|||!..||| ! !||| ! | sIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuA 886 : AATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGC : 824 107 : rgLysProArgIleLysAspCysIleGluGlnIleTrpIleAspTrpGluGlnValGluLeu : 126 ||::: !! !|||::: !!! !.!!.!.!!.!!: !! !||||||..! !..! rgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArg 823 : GACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgaga : 764 127 : HisGluAspArgLysValMetLeuLysTyrGlyGlnIleGlyArgAsnLeuThrIleIleCy : 147 ||| :::::::::||||||||||||!.!:!!.!!.!!||| !! !.!!||| !|| LysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCy 763 : aaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTG : 701 148 : sAlaValPheIleTyrThrGlyGlySerIlePheHisThrIleLeuGlnTyr<->LysIleG : 167 |.!!:!!||||||:!! !||| ! ! !!:! !..!!!: ! !!:! ! !!!:! sThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetV 700 : TACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGG : 638 168 : lyThrPheIleAspGluHisAsnArgThrIleLysProValValTyrProThrTyrAsnAla : 187 !..! ! :!!! .!..!.!.!! !! !:!:::: !:!! !! |||! !|||!!.!.! alValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGly 637 : TTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGG : 578 188 : LeuPheAspValGlnLysSerProIleTyrGluLeuValTyrLeuLeuHisSerIleCysGl : 208 |||.!! |||.!.! !!:! !!!!: !!|||:!!||| !|||! !!!.! !:!!! !|| LeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGl 577 : CTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGG : 515 209 : yTyrIleMetTyrSerValThrAlaGlySerCysGlyLeuThrAlaLeuPheAlaThrHisA : 229 |!:!||| ! !!!!! !.!! !.!! ! .!!||||||::! !.!..!!:!!|||| yPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisA 514 : ATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACG : 452 230 : laCysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeuIleHisGlyLysTyrThr : 249 ||! !||||||:!:! !:!:|||!!: ! !:!!.!.|||!!!:!: !! ! ! ! laSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArg 451 : CGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGC : 392 250 : LysAsnThrPheAsnLeuAsnThrArgLeuValLysIleValLysHisHisLeuArgIleLe : 270 !:!...! ! !:!!! ! ! !..!:!! !! !||||||:!! ! |||||||||:!:|| ArgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLe 391 : AGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTT : 329 271 : uArg : 271 |!:! uLys 328 : GAAG : 324 vulgar: AmOr61 2 271 . LHQN01028641.1 1133 323 - 295 M 162 486 G 0 3 M 107 321 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 324 1133 295 - . gene_id 1 ; sequence AmOr61 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 324 1133 . - . LHQN01028641.1 exonerate:protein2genome:local exon 324 1133 . - . insertions 3 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 324 1133 295 - . alignment_id 1 ; Query AmOr61 ; Align 1134 3 486 ; Align 645 165 321 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 290 Query range: 23 -> 286 Target range: 1070 -> 278 24 : TyrValThrLysHisSerLysTrpIleLeuLysSerIleGlyIleTrpProIleIleLeuLy : 44 ||| ! !:!! !:!::!||| :!!|||||||||||| !|||||| !! !.. TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSerSe 1070 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCGTC : 1010 45 : sAspValAlaLysPheLeuProLysIleValIleGlyIleSerAsnPheValLeuLeuPheA : 65 !:!!:!!! !!:!.!!:!! !!::!|||:!!! !! !|||!!! !! !!.!:!!||||||. rAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheT 1009 : GAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCA : 947 66 : laIleIleProCysIleLeuTyrIleIleLeuGluGluLysAsnAsnLeuIleLysLeuLys : 85 !!|||||||||||| |||:!!:!!!!:||||||:!!:!!!.! !! !! |||:!!||| hrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLys 946 : CGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAA : 887 86 : LeuPheGlyLeuLeuMetPheCysSerIleAlaLeuMetLysHisTrpAlaLeuAlaTyrAr : 106 :!!.!!|||! !|||! !!! !.!!..!:!!!!:!..:!! !||| ! || IleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuAr 886 : ATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCG : 824 107 : gLysProLysIleLysAsnCysIleGluGlnIleGlnAsnAspTrpGluGlnValLysLeuT : 127 |::: !! |||::::!!! !.!!.!.!!.!!::!!!.!||||||..! !..!! gArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgL 823 : ACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaa : 761 128 : yrGluAspArgGluMetMetLeuLysTyrGlyGlnValGlyArgAsnLeuThrIleIleCys : 147 ||| :::|||:::||||||||||||!.!:!! !!.!!||| !! !.!!||| !||| ysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCys 760 : aggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGT : 701 148 : AlaValPheMetTyrThrGlyGlyIleIleTyrHisThrIleLeuGlnTyr<->GluIleGl : 167 .!!:!!|||!!::!! !||| !:!! !||| !..!!!: ! !!:! !!!:! ThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetVa 700 : ACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGT : 638 168 : yThrPheIleAspGluTyrAsnHisThrIleLysProValIleTyrProThrTyrSerGlyL : 188 !..! ! :!!! .!. ! !.! ! !:!:::: !:!! ! |||! !|||!.!|||| lValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyL 637 : TGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGC : 575 189 : euPheAsnValGlnLysSerProIleTyrGluLeuIleTyrValLeuHisCysThrCysGly : 208 ||.!! |||.!.! !!:! !!!!: !!|||:!!:!! !:!!! !!!.! ! !! !||| euLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGly 574 : TCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGA : 515 209 : TyrValMetTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheValThrHisAl : 229 !:!:!! ! !!!!!! !.!! !.!!!.! .!!|||.!!::! !.!...!:!!||||| PheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAl 514 : TTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGC : 452 230 : aCysGlyGlnIleAspIleValIleAlaArgLeuAsnAspLeuValHisAlaLysTyrGlyL : 250 |! !||||||:!:! !:!:|||!!: ! !:!!.!.|||!!!||| !! ! ! !!! aSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgA 451 : GTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCA : 389 251 : ysGlyLysPheAsnLeuAsnAlaArgLeuIleLysIleValGluHisHisLeuGlnIleLeu : 270 :!|||||| !:!!! ! !! !..!:!! ! !||||||||| ! ||||||::!:!:||| rgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeu 388 : GAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG : 329 271 : ArgPheSerAlaThrValGlnValIleLeuGlnGluValCysPheLeu : 286 !:!! !..! !:!!.!.:!!||||||! ! !! ! |||||| Lys***ValCysLeuLeuAspLeuIleLeuProMetGlyValPheLeu 328 : AAGTAAGTATGTTTGTTGGATTTGATTTTGCCGATGGGTGTGTTTCTC : 279 vulgar: AmOr60 23 286 . LHQN01028641.1 1070 278 - 290 M 141 423 G 0 3 M 122 366 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 279 1070 290 - . gene_id 1 ; sequence AmOr60 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 279 1070 . - . LHQN01028641.1 exonerate:protein2genome:local exon 279 1070 . - . insertions 3 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 279 1070 290 - . alignment_id 1 ; Query AmOr60 ; Align 1071 24 423 ; Align 645 165 366 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 468 Query range: 0 -> 266 Target range: 1124 -> 326 1 : MetMetAlaAspAspIleAlaThrValGlnLysGluPheAsnAsnLeuAsnGluTyrSerIl : 21 |||! !||| ! ! !!.!..!..!:!!! .!..!.!.! ! !!:!!!:||||||:! MetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLe 1124 : ATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCT : 1064 22 : eGlnPheAsnLysTrpPheSerLysThrIleGlyValTrpProLeuProSerSerThrSerL : 42 !|||!::|||::!||| ! !|||!:!||||||!.!||| |||..!|||:!!|||! uGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrp------ProGlnSerSerSerA 1063 : CCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGG------CCACAGTCCTCGTCGA : 1007 43 : ysPheGluLysIleValThrArgIleLeuIleIleValCysSerIleIleThrLeuPheVal : 62 !..!!|||!:!|||:!!:!!|||||||||! !:!::!!|||! !! ! !..!||||||..! snLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThr 1006 : ATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACG : 947 63 : IleIleProSerMetLeuHisPheIleLeuValLysGluAspIleIleSerLysLeuLysSe : 83 |||||||||!!! !|||||| ! !!:|||! !|||||| !.!! !!!!|||:!!|||! IleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIl 946 : ATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAAT : 884 84 : rLeuGlyProIleSerTyrCysPheGlyGlyGlyLeuAsnTyrAlaValLeuLeuLeuArgL : 104 !|||||||||:!:|||:!!!! ! ! !! !:!!!:!|||.!!:!!||||||||||||: eLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgA 883 : ACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGAC : 821 105 : ysAsnAspIleArgTyrCysIleAspHisIleGluThrAspTrpLysValIleThrArgMet : 124 ::!!. !||||||:!!! !.!!:!!|||!!:||||||||||||!:!..!! ! ||| rgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLys 820 : GTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaag : 761 125 : ThrAspArgGlnValMetLeuLysAsnAlaLysIleGlyArgIleIleSerCysCysIleVa : 145 :::::::::||||||||| !!||||||.!!.!!||| ! :!! !! ! !.. GluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysTh 760 : gagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTAC : 698 146 : lGlyPheLeuGlnIleGlyThrPheCysPheCysThrIleLeuGlyValPheLysArgThrI : 166 ! !|||:!!!!. !|||! !.!! ! !:!|||..!!!: !!.! !! !! !! !..!: rIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValV 697 : GATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTG : 635 167 : leLysIleGlyAsnAsnSerMetGluIleTyrValLeuProSerProAlaTyrLys<-><-> : 185 !! !:!!||||||.!.!!!||| :!: !|||||||||! !||| !|||||| alValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeu 634 : TCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTC : 575 186 : IleProValAspThrAsnProGlyHisAspIleValLeuCysPheGlnTyrLeuAlaAlaTy : 205 :!!||||||||||||||| !! !:!!!!:|||||||||! ! |||!:!|||:!!!.!!: LeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPh 574 : CTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATT : 512 206 : rIleThrSerAlaThrValValSerAlaPheSerPheAlaIleValPheAlaCysHisAlaS : 226 !|||.!!!:!.!!!:!!.!:!!|||!.!.!.|||.!!.!!! !!.!.!..!!! ||||||| eIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaS 511 : TATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGT : 449 227 : erGlyGlnLeuThrIleMetIleIleTrpIleGluGluPheIleAsnArgProGlnGluGlu : 246 ||||||||||| !:!::!:!!::!:! !||||||!!:|||:!:!:! ! !!::!.....! erGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArg 448 : CTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGA : 389 247 : AsnLysAsnValHisIleAspLysIleSerValIleIleLysHisHisMetArgIleLeu : 266 ...|||:!!! !|||.!!|||:!!||| !!..!|||:!::!! ! |||:!!|||:!:||| GlyLysAspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeu 388 : GGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG : 327 vulgar: AmOr38 0 266 . LHQN01028641.1 1124 326 - 468 M 34 102 G 2 0 M 148 444 G 0 6 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 327 1124 468 - . gene_id 1 ; sequence AmOr38 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 327 1124 . - . LHQN01028641.1 exonerate:protein2genome:local exon 327 1124 . - . insertions 6 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local similarity 327 1124 468 - . alignment_id 1 ; Query AmOr38 ; Align 1125 1 102 ; Align 1023 37 444 ; Align 573 185 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 276 Query range: 13 -> 285 Target range: 1097 -> 278 14 : AsnLeuAsnTyrGluLysAspIleValTyrValThrLysHisAsnLysTrpIleLeuAsnSe : 34 .!.:!!||| ..!! !! !||| ! !:!! |||::!||| :!!!!.|| GluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSe 1097 : GAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAG : 1037 35 : rIleGlyIleTrpProThrValLeuLysGlyIleAspGluTyrLeuProLysIleAlaIleA : 55 ||||||| !|||||| ! !! !..!..!:!!!!:..! !:!! !!::!||| !! !! rIleGlyAlaTrpProGlnSerSerSerAsnLeuGluArgIleIleSerArgIleLeuAsnV 1036 : CATAGGCGCATGGCCACAGTCCTCGTCGAATCTCGAGAGAATCATCTCTCGAATATTGAACG : 974 56 : laLeuSerAsnLeuValLeuSerPheThrValIleGlnCysValLeuHisIleLeuLeuGlu : 75 .!:!!!!! !! !!.!:!! !||||||:!!|||! ||| !||||||:!!:!!|||||| alIleCysTyrThrAlaValLeuPheThrIleIleProCysSerLeuHisValMetLeuGlu 973 : TGATCTGCTACACCGCAGTACTATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAA : 914 76 : GlnLysAspProIleLeuArgLeuLysIleLeuGlyLeuThrPhePheSerPheIleSerLe : 96 :!!:!! ! ! ! !!:!:!!||||||||||||! ! ! ! !!!! ! .!!!!!:! LysGluThrPheTyrThrLysValLysIleLeuGlyProLeuSerHisTrpValPheCysIl 913 : AAAGAGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTAT : 851 97 : uMetLysTyrTrpValLeuThrMetArgLysProLysIleLysLeuCysIleGluGlnIleG : 117 !!!:!..||| :!!||| !:!!|||::: !! |||:::! !! !.!!.!.!!.!!:: eIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetG 850 : CATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGG : 788 118 : lnHisAspTrpLysGlnValGluPheGluArgAspArgLysLeuMetLeuLysTyrGlyIle : 137 !! !||||||!:! !..! :::... :::::::::||||||||||||!.!! ! luThrAspTrpArgThrThrMetArgLysGluLysLysGluIleMetLeuLysTyrAlaLys 787 : AGACCGATTGGAGAACGACGAtgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAA : 728 138 : IleGlyArgAsnLeuSerMetTyrSerIleValPheMetTyrSerGlyGlyIleIleTyrHi : 158 .!!.!!||| !! !:!!!!:! !!!!! :!!|||!!::!!.!!||| !:!! !||| PheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCy 727 : TTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTG : 665 159 : sThrValMetHisTyr<->LysLeuGlySerTyrValAspGluTyrAsnArgThrIleLysL : 178 !..!:!!! !:! ! !:!!! ! ! |||! .!. ! !.!! !! !:!::::: sValMetThrAlaPheThrThrMetValValValValGlyAsnGluThrMetIleLeuArgV 664 : TGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCG : 602 179 : euLeuIleTyrProThrTyrSerArgLeuTyrAspValGlnLysSerProValTyrGluLeu : 198 !!||| ! |||! !|||!.! !!||| ! |||.!.! !!:! !!:!! !!|||:!! alLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnGluIle 601 : TGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATC : 542 199 : ValTyrIleLeuGlnCysIleCysGlyTyrMetPheAspAlaValThrValGlyAlaCysGl : 219 ||| !:!:! !|||! !:!!! !|||!:!!!: :!!.!! !.!!:!!.!!!.! .! ValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSe 541 : GTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAG : 479 220 : yLeuAlaAlaLeuPheAlaThrHisIleCysGlyGlnIleAspIleValMetAlaLysLeuG : 240 !|||.!!::! !.!..!!:!!||| ! !||||||:!:! !:!:|||||| !..!:!!| rLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleG 478 : CCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCG : 416 241 : luAspLeuValAspGlyLysPheSerLysGluAsnSerAsnProAsnIleArgLeuIleGlu : 260 |||||!!!|||..!! ! ! !!!:!! !!!...!:!!! ! ! !..!:!! ! luAspPheValSerAspAlaArgArgArgGlyLysAspAspHisPheAspGluIleProThr 415 : AAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACA : 356 261 : IleIleGluHisHisIleLysIleLeuArgPheSerAlaMetValGluThrValLeuGlnGl : 281 |||:!:||| ! |||:!:!:!:!:|||!:!! !..!:!!:!!!!: !:!!|||! ! IleValGluLysHisLeuArgValLeuLys***ValCysLeuLeuAspLeuIleLeuProMe 355 : ATCGTGGAGAAACATTTGAGAGTGTTGAAGTAAGTATGTTTGTTGGATTTGATTTTGCCGAT : 293 282 : uValCysPheLeu : 285 !! ! |||||| tGlyValPheLeu 292 : GGGTGTGTTTCTC : 279 vulgar: AmOr58 13 285 . LHQN01028641.1 1097 278 - 276 M 150 450 G 0 3 M 122 366 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 279 1097 276 - . gene_id 1 ; sequence AmOr58 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 279 1097 . - . LHQN01028641.1 exonerate:protein2genome:local exon 279 1097 . - . insertions 3 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 279 1097 276 - . alignment_id 1 ; Query AmOr58 ; Align 1098 14 450 ; Align 645 164 366 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 437 Query range: 2 -> 265 Target range: 1115 -> 326 3 : AspAspIleValAlaValGlnLysLysPheGlySerLeuAsnGluTyrSerIleGlnLeuAs : 23 ||| ! ! !|||!.!..!:!!! !!..!. !:!! !!:!!!:||||||:!!|||! !|| AspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAs 1115 : GACAAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTGGAA : 1055 24 : nArgTrpLeuSerLysMetIleGlyValTrpProLeuProSerPheThrSerLysPheGluL : 44 ||||||| !! !|||! ||||||!.!||||||! ! !!||| |||!!..!!|||! nArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSer------SerAsnLeuGluA 1054 : TCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCG------TCGAATCTCGAGA : 998 45 : ysIleMetThrLysIleLeuIlePhePheTyrTrpIleIleLeuLeuPheIleIleLeuAla : 64 :!|||!!::!!::!||||||! ! ! .!!! !!::! ! !:!!||||||! |||:!! !! rgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIlePro 997 : GAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATCCCT : 938 65 : SerSerLeuHisPheLeuPheValLysGluAspIleValSerLysLeuLysThrLeuGlyPr : 85 !!!||||||||| ! :!!.!.! !|||||| !.!! !!!!|||:!!|||! !|||||||| CysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGlyPr 937 : TGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGGTCC : 875 86 : oIleSerTyrCysPheGlyGlyGlyPheAsnTyrAlaValLeuLeuLeuArgLysAsnAspI : 106 |:!:|||:!!!! ! ! !! !.!!!:!|||.!!:!!||||||||||||:::!!. !| oLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrI 874 : GTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCA : 812 107 : leArgTyrCysIleGluHisIleGluThrAspTrpLysIleIleLysArgMetGluAspGln : 126 |||||:!!! !.!!.!.|||!!:||||||||||||!:!! ! ! ||| ||| ::: leArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLysLys 811 : TACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaagaaa : 752 127 : GlnValMetLeuLysSerAlaLysIleGlyArgIleIleSerGlyCysIleAlaGlyPheMe : 147 ::::::|||||||||! !||||||.!!.!!||| ! :!! !! ! !.!! !|||!! GluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIl 751 : gaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCAT : 689 148 : tHisIleGlyThrPheCysPheCysIleValLeuGlyValLeuLysArgThrIleLysIleG : 168 :||| !|||! !.!! ! !:!|||:!!:!! !!.! !! !! !! !..!:!! !:!!| eHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValValG 688 : ACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTG : 626 169 : lyAsnAspSerMetGluMetTyrValLeuProPheProThrTyrLys<-><->IleProVal : 186 |||||!!:!!!||| :!! !|||||||||!!.|||! !|||||| :!!|||||| lyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProVal 625 : GAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTC : 566 187 : AspThrAsnProGlyHisGlyIleIleLeuSerLeuGlnTyrLeuThrSerTyrThrSerSe : 207 ||||||||| !! !:!!! !|||:!!|||! !! !|||!:!|||:!!.!!!:!! !:!!!: AspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAs 565 : GATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAA : 503 208 : rAlaThrValValIleAlaPheSerLeuAlaThrValPheAlaTyrHisAlaIleGlyGlnL : 228 !.!!!:!!.!:!!! !!.!.!.||||||.!!!:!!.!.!..!!! |||||| !||||||| nThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnL 502 : CACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGT : 440 229 : euThrIleMetIleSerTrpIleGlnGluPheValAsnGlnProGlnLysGlnAsnLysAsn : 248 || !:!::!:!!:! !! !|||:!!!!:||||||!:!.!. !!::!:::::!...|||:!! euGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLysAsp 439 : TGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAGGAC : 380 249 : IleArgIleAspGluIleSerIleIleIleGluHisHisLeuArgIleLeu : 265 !!.!.!!||||||||| !!! !|||:!:||| ! |||||||||:!:||| AspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeu 379 : GATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG : 327 vulgar: AmOr48 2 265 . LHQN01028641.1 1115 326 - 437 M 35 105 G 2 0 M 144 432 G 0 6 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 327 1115 437 - . gene_id 1 ; sequence AmOr48 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 327 1115 . - . LHQN01028641.1 exonerate:protein2genome:local exon 327 1115 . - . insertions 6 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local similarity 327 1115 437 - . alignment_id 1 ; Query AmOr48 ; Align 1116 3 105 ; Align 1011 40 432 ; Align 573 184 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 430 Query range: 0 -> 266 Target range: 1124 -> 326 1 : MetMetAlaAspAspIleAlaAlaIleGlnLysLysPheGlySerLeuAsnGluTyrSerIl : 21 |||! !||| ! ! !!.!!.!! !:!!! !!..!. !:!! !!:!!!:||||||:! MetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLe 1124 : ATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCT : 1064 22 : eGlnLeuAsnArgTrpPheSerLysThrIleGlyValTrpProLeuProSerSerThrSerL : 42 !|||! !||||||||| ! !|||!:!||||||!.!||| |||..!|||:!!|||! uGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrp------ProGlnSerSerSerA 1063 : CCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGG------CCACAGTCCTCGTCGA : 1007 43 : ysLeuGluLysIleMetThrLysIleLeuIlePheLeuCysTrpIleIleAlaLeuPheVal : 62 !.||||||!:!|||!!::!!::!||||||! ! ! :!!|||!::! ! !!.!||||||..! snLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThr 1006 : ATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACG : 947 63 : IleIleSerSerLeuLeuTyrPheAlaLeuValLysGluAspIleIleSerLysLeuLysTh : 83 |||||| !!!!!! !|||:!! ! !|||! !|||||| !.!! !!!!|||:!!|||! IleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIl 946 : ATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAAT : 884 84 : rLeuGlyProIleSerTyrCysPheGlyGlyGlyLeuAsnTyrAlaValLeuLeuLeuArgL : 104 !|||||||||:!:|||:!!!! ! ! !! !:!!!:!|||.!!:!!||||||||||||: eLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgA 883 : ACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGAC : 821 105 : ysAsnAspIleArgTyrCysIleAspHisIleGluThrAspTrpLysAlaIleThrArgThr : 124 ::!!. !||||||:!!! !.!!:!!|||!!:||||||||||||!:!.!!! ! ||| rgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLys 820 : GTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaag : 761 125 : GlyAspArgGlnValMetPheLysAsnAlaLysIleGlyArgIleIleSerGlyCysValAl : 145 :::::::::|||.!.||| !!||||||.!!.!!||| ! :!! !! ! !.! GluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysTh 760 : gagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTAC : 698 146 : aGlyPheLeuGlnLeuSerThrIleSerPheCysThrValPheGlyValPheLysArgArgI : 166 ! !|||:!!!!. !.!!! !:!!.!!!:!|||..!:!! !.! !! !! !! ! !: rIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValV 697 : GATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTG : 635 167 : leLysIleGlyAsnGluSerMetGluIleTyrValLeuProPheProThrTyrLys<-><-> : 185 !! !:!!|||||||||!!!||| :!: !|||||||||!!.|||! !|||||| alValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeu 634 : TCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTC : 575 186 : IleProValAspThrAsnProGlyHisAsnIleValLeuGlyPheGlnPheLeuAlaAlaTy : 205 :!!||||||||||||||| !! !:!!.!.||||||||| !! |||||||||:!!!.!!: LeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPh 574 : CTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATT : 512 206 : rIleMetSerAlaThrValValIleAlaPheSerLeuAlaThrValPheAlaCysHisAlaI : 226 !||| !!:!.!!!:!!.!:!!! !!.!.!.||||||.!!!:!!.!.!..!!! |||||| eIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaS 511 : TATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGT : 449 227 : leGlyGlnLeuThrIleMetIleThrTrpIleGluGluPheValAsnArgProGlnGluGlu : 246 !||||||||| !:!::!:!!: !! !||||||!!:||||||!:! ! !!::!.....! erGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArg 448 : CTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGA : 389 247 : AsnLysAsnMetArgValAsnGluIleSerValIleIleGluHisHisLeuArgIleLeu : 266 ...|||:!! !.! !!:!!|||||| !!..!|||:!:||| ! |||||||||:!:||| GlyLysAspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeu 388 : GGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG : 327 vulgar: AmOr43 0 266 . LHQN01028641.1 1124 326 - 430 M 34 102 G 2 0 M 148 444 G 0 6 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 327 1124 430 - . gene_id 1 ; sequence AmOr43 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 327 1124 . - . LHQN01028641.1 exonerate:protein2genome:local exon 327 1124 . - . insertions 6 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local similarity 327 1124 430 - . alignment_id 1 ; Query AmOr43 ; Align 1125 1 102 ; Align 1023 37 444 ; Align 573 185 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 426 Query range: 2 -> 265 Target range: 1115 -> 326 3 : AspAspIleValAlaIleGlnLysLysPheGlySerLeuAsnGluTyrSerIleGlnValAs : 23 ||| ! ! !|||!.!! !:!!! !!..!. !:!! !!:!!!:||||||:!!||| !|| AspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAs 1115 : GACAAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTGGAA : 1055 24 : nArgTrpLeuSerLysThrIleGlyValTrpProPheThrSerThrThrSerLysPheGluL : 44 ||||||| !! !|||!:!||||||!.!|||||| ..!:!!:!!|||!!..!!|||! nArgTrpAlaMetLysSerIleGlyAlaTrpPro------GlnSerSerSerAsnLeuGluA 1054 : TCGATGGGCGATGAAAAGCATAGGCGCATGGCCA------CAGTCCTCGTCGAATCTCGAGA : 998 45 : ysIleMetThrLysIleLeuIleIleValCysSerIleIleAlaLeuPheValThrValPro : 64 :!|||!!::!!::!||||||! !:!::!!|||! !! ! !!.!||||||..!! !:!!||| rgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIlePro 997 : GAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATCCCT : 938 65 : SerMetLeuHisPheIleLeuValLysGluAspIleIleThrLysLeuLysMetThrGlyPr : 85 !!! !|||||| ! !!:|||! !|||||| !.!! !||||||:!!|||!!: !||||| CysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGlyPr 937 : TGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGGTCC : 875 86 : oIleIleTyrCysIleGlyGlyGlyLeuAsnTyrAlaIleLeuLeuPheLeuArgAspAspI : 106 |:!:! !:!!!! :!: ! !! !:!!!:!|||.!!!!:||||||.!.! !||| ! !| oLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrI 874 : GTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCA : 812 107 : leArgTyrCysIleGluHisIleGluAlaAspTrpLysThrIleThrArgThrGlyAspArg : 126 |||||:!!! !.!!.!.|||!!:|||.!!||||||!:!|||! ! ||| ::: leArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLysLys 811 : TACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaagaaa : 752 127 : GlnValMetPheLysAsnAlaLysIleGlyArgIleIleSerGlyCysIleGlySerPheLe : 147 ::::::|||.!.||| !!||||||.!!.!!||| ! :!! !! ! ! !! !|||:! GluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIl 751 : gaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCAT : 689 148 : uGlnPheSerThrIleSerTyrCysThrValPheGlyValPheLysGlnThrIleLysIleG : 168 !!!. !.!!! !:!!.!!||||||..!:!! !.! !! !! !..!..!:!! !:!!| eHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValValG 688 : ACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTG : 626 169 : lyAsnGluSerMetGluIleHisValLeuProPheProThrTyrLys<-><->IleProVal : 186 ||||||||!!!||| :!:!.!|||||||||!!.|||! !|||||| :!!|||||| lyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProVal 625 : GAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTC : 566 187 : AspThrAsnLeuGluHisGlyIleValLeuGlyPheGlnTyrLeuThrAlaCysIleMetTh : 207 ||||||||| ! !:!!! !||||||||| !! |||!:!|||:!!!.!! !||| !!. AspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAs 565 : GATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAA : 503 208 : rAlaThrIleIleIleAlaPheSerLeuAlaThrValPheAlaCysHisAlaValGlyGlnL : 228 !.!!!:! |||! !!.!.!.||||||.!!!:!!.!.!..!!! |||||| !||||||| nThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnL 502 : CACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGT : 440 229 : euThrIleMetValThrTrpIleGluGluPheValAsnArgProGlnGluGluLysLysAsn : 248 || !:!::!::!! !! !||||||!!:||||||!:! ! !!::!.....! !|||:!! euGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLysAsp 439 : TGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAGGAC : 380 249 : MetArgIleAsnGluIleSerValIleIleGluHisHisLeuArgIleLeu : 265 !.!.!!:!!|||||| !!..!|||:!:||| ! |||||||||:!:||| AspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeu 379 : GATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG : 327 vulgar: AmOr41 2 265 . LHQN01028641.1 1115 326 - 426 M 32 96 G 2 0 M 147 441 G 0 6 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 327 1115 426 - . gene_id 1 ; sequence AmOr41 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 327 1115 . - . LHQN01028641.1 exonerate:protein2genome:local exon 327 1115 . - . insertions 6 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local similarity 327 1115 426 - . alignment_id 1 ; Query AmOr41 ; Align 1116 3 96 ; Align 1020 37 441 ; Align 573 184 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: LHQN01028838.1 Habropoda laboriosa contig28838, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 265 -> 299 Target range: 644 -> 542 266 : SerPheIleAlaArgValGluHisValMetSerProIleCysPheMetGluMetIleLysCysM : 287 |||||||||:!!|||:!!||| :!!|||!:! ! ||||||:!!|||:!:! !:!|||| SerPheIleSerArgIleGluAlaMetMetAsnLysAlaCysPheLeuGluLeuThrArgCysM 644 : AGCTTCATATCGCGCATAGAGGCAATGATGAACAAAGCGTGTTTCCTGGAGTTAACGAGGTGCA : 581 288 : etValGlyIleCysMetProIleTyrTyrIleLeuMet : 299 ||:!!!.!:!!||| ! ! !|||||||||!!!||| etIleAlaValCysAlaLeuGlyTyrTyrIlePheMet 580 : TGATAGCTGTATGCGCACTTGGATATTATATATTCATG : 543 vulgar: AmOr49 265 299 . LHQN01028838.1 644 542 - 100 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028838.1 exonerate:protein2genome:local gene 543 644 100 - . gene_id 1 ; sequence AmOr49 ; gene_orientation . LHQN01028838.1 exonerate:protein2genome:local cds 543 644 . - . LHQN01028838.1 exonerate:protein2genome:local exon 543 644 . - . insertions 0 ; deletions 0 LHQN01028838.1 exonerate:protein2genome:local similarity 543 644 100 - . alignment_id 1 ; Query AmOr49 ; Align 645 266 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 394 Query range: 1 -> 165 Target range: 381 -> 867 2 : ThrSerLysSerValIleSerGluGluSerPheAspSerLeuCysAspTyrSerLeuGlnLeuA : 23 !.!..!|||!!!|||:!!!!!||| !:!.!. !:!! ! !!|||||||||||||||! !| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpA 382 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGA : 445 24 : snArgTrpLeuLeuLysProIleGlyAlaTrpProSerSerSerSerSerSerLysLeuGluAr : 44 |||||||| !:!!||| !||||||.!!||||||..!! !||||||!:! |||||||| snArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerAsn------LeuGluAr 446 : ATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGAAC------CTCGAGAG : 502 45 : gIleValSerPhePheLeuIleValLeuCysTyrGlyPheIleLeuPheThrValIleProSer : 65 |! !:!!||| .!.|||! !|||:!!|||||| ! |||||||||:!!:!!||||||!!! gAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCys 503 : AAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGT : 565 66 : LeuPheHisIleValLeuGluAspGluAsnLeuHisMetLysLeuLysValPheGlyProLeuS : 87 ! !!!.|||:!!:!!|||||| ! ! !!.!!!!:!!! !|||:!!|||:!!.!!||| !!|||| SerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuS 566 : TCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGA : 631 88 : erHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuGlnAsnLysGluIleGlnTy : 108 |||||||| ! .!! !! !|||!:!||||||! !|||||||||!:!..!||| |||!!.:! erHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHi 632 : GCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCA : 694 109 : rCysValGluHisMetGlnThrAspTrpLysIleValAsnArgAlaLysAspGlnGlnValMet : 129 !! !|||.!.||||||:!!|||||||||!:!! ..!...||| ::: ::::::|||||| sPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMet 695 : CTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATG : 757 130 : MetLysTyrAlaLysIleGlyArgTyrIleAlaAlaLeuCysAlaIlePheMetGlnThrGlyV : 151 :!!||||||||||||.!!.!!|||||| ||| !!!!||||||||||||!!:!!. !|||: LeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyI 758 : TTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACACGGTGGTA : 823 152 : alLeuThrTyrCysValValThrAlaPheSerThrArgIleIle : 165 !!||| !|||||||||:!!||||||! !!!!|||! !:!!:!! leLeuGlyTyrCysValMetThrAlaSerThrThrMetValVal 824 : TACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTC : 867 vulgar: AmOr31 1 165 . LHQN01028951.1 381 867 + 394 M 38 114 G 2 0 M 124 372 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 382 867 394 + . gene_id 1 ; sequence AmOr31 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 382 867 . + . LHQN01028951.1 exonerate:protein2genome:local exon 382 867 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 382 867 394 + . alignment_id 1 ; Query AmOr31 ; Align 382 2 114 ; Align 496 42 372 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 232 Query range: 0 -> 154 Target range: 375 -> 834 1 : MetGluLysAsnArgSerIleIleGlyHisAspAspTyrGluArgAsnValAsnLeuSerIleA : 22 |||...!!.:!!!:!!!!:!::!! !.!. !:!! !!:! !:!!! !|||:!!! MetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuG 376 : ATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCC : 439 23 : rgTrpAsnArgPheLeuLeuLysSerLeuGlyThrTrpProAsnLeuArgGluSerArgIleGl : 43 :!|||||||||!:: !:!!||||||:!!||||||||||||.!.!!! ..!|||!.!:!!! lnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPhe---SerSerAsnLeuGl 440 : AGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTC---TCGTCGAACCTCGA : 499 44 : yLysCysTyrSerValLeuIleGlyIleValCysTyrGlyLeuIleSerPheMetLeuThrSer : 64 !!:! ! !||| !:!!:!!..!:!::!!|||||| ! !||| !||| !:!!! ! !! uArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIlePro 500 : GAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCT : 562 65 : SerAsnMetPheLeuValValGluValLysAspThrTyrAsnArgIleLysMetIleGlyProL : 86 !!!::::!! !|||:!!:!!||| ! ! ! !|||!..!:!:!:|||!!::!!||| !!| CysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerL 563 : TGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGT : 628 87 : euSerPhePheAlaMetThrLeuIleLysTyrTyrPheLeuThrPheHisGluGluAsnIleAr : 107 ||||| !!::!.!.!. !:!!|||!..||| !.!.||| !.!.!.....:!!!.!|||!. euSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHi 629 : TGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACA : 691 108 : gLysGlyIleGluHisIleGluTrpAspTrpLysAsnValLysHisGluGluAspLysArgIle : 128 ! ! !:!!.!.|||!!:||| ||||||!:!!....! ...:::||| |||...::: sHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluVal 692 : TCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtc : 754 129 : MetIleGluTyrAlaAsnTyrGlyLysLysLeuAlaLeuIleSerIlePhePheValTyrSerA : 150 |||:!::!!||||||!!.!:!.!!::! ! !|||:!!.!!!!! .!!|||:!!:!!.!!! MetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyG 755 : ATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACACGGTG : 820 151 : laPheValPheTyr : 154 .!.!.:!! ||| lyIleLeuGlyTyr 821 : GTATACTTGGATAT : 834 vulgar: AmOr30 0 154 . LHQN01028951.1 375 834 + 232 M 37 111 G 1 0 M 116 348 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 376 834 232 + . gene_id 1 ; sequence AmOr30 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 376 834 . + . LHQN01028951.1 exonerate:protein2genome:local exon 376 834 . + . insertions 0 ; deletions 1 LHQN01028951.1 exonerate:protein2genome:local similarity 376 834 232 + . alignment_id 1 ; Query AmOr30 ; Align 376 1 111 ; Align 487 39 348 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr61 Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 229 Query range: 2 -> 154 Target range: 366 -> 822 3 : LeuThrThrLeuAsnLysAsnAsnCysLysValArgAsnLeuLysTyrLysGluAspIleAlaT : 24 :!!..!|||:!!!:!!!.:!!!!. ! !|||! !.!.:!!!!. ! ! ..!! !! !| ValValThrMetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspT 367 : GTGGTCACGATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATT : 430 25 : yrIleThrLysHisAsnLysTrpIleLeuLysSerIleGlyIleTrpProSerValLeuLysSe : 45 ||! ! !:!! |||::!||| :!!||||||||||||! !||||||..! !!! !..!!: yrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerAs 431 : ACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGAA : 493 46 : rValSerArgPheLeuProLysIleMetPheGlyPheAsnAsnPheValLeuLeuPheSerVal : 66 !:!!..!||| !:!! !!::!|||:!: !! !.!! ! !! !!.!:!!|||||||||:!! nLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIle 494 : CCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATA : 556 67 : IleProCysIleLeuTyrIleValTyrGluGluLysAsnIleMetIleLysPheLysLeuValG : 88 ||||||||| |||:!!:!!:!! |||:!! !!.!.!! ! ||| ! |||:!!:!!| IleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuG 557 : ATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCG : 622 89 : lyLeuLeuSerPheSerLeuIleAlaLeuIleLysTyrTrpThrLeuThrTyrArgLysProAr : 109 ||! !|||||| !!!!:!!.!!..!:!!|||!..||| ! !||| ! |||::: !! lySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysTh 623 : GTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAAC : 685 110 : gIleLysAspCysIleGluGlnIleTrpIleAspTrpGluGlnValGluLeuHisGluAspArg : 130 !||| ! !!! !:!!.!.!!.!!: !! !||||||..! !..! ||| ::: rIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLys 686 : CATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaa : 748 131 : LysValMetLeuLysTyrGlyGlnIleGlyArgAsnLeuThrIleIleCysAlaValPheIleT : 152 :::|||||||||||||||!.!:!!.!!.!!||| !! !.!!|||.!!||||||:!!||||||: GluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleH 749 : gaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATAC : 814 153 : yrThrGly : 154 !! !||| isGlyGly 815 : ACGGTGGT : 822 vulgar: AmOr61 2 154 . LHQN01028951.1 366 822 + 229 M 152 456 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 367 822 229 + . gene_id 1 ; sequence AmOr61 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 367 822 . + . LHQN01028951.1 exonerate:protein2genome:local exon 367 822 . + . insertions 0 ; deletions 0 LHQN01028951.1 exonerate:protein2genome:local similarity 367 822 229 + . alignment_id 1 ; Query AmOr61 ; Align 367 3 456 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr60 Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 209 Query range: 23 -> 158 Target range: 429 -> 834 24 : TyrValThrLysHisSerLysTrpIleLeuLysSerIleGlyIleTrpProIleIleLeuLysA : 45 ||| ! !:!! !:!::!||| :!!||||||||||||! !|||||| .!!! !..!: TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerA 430 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGA : 493 46 : spValAlaLysPheLeuProLysIleValIleGlyIleSerAsnPheValLeuLeuPheAlaIl : 66 !!:!!! !!:! !:!! !!::!|||:!!! !! !|||!!! !! !!.!:!!||||||:!!|| snLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIl 494 : ACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGAT : 556 67 : eIleProCysIleLeuTyrIleIleLeuGluGluLysAsnAsnLeuIleLysLeuLysLeuPhe : 87 |||||||||| |||:!!:!!!!:||||||:!! !!.! !! !! |||:!!|||:!!.!! eIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeu 557 : AATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTC : 619 88 : GlyLeuLeuMetPheCysSerIleAlaLeuMetLysHisTrpAlaLeuAlaTyrArgLysProL : 109 |||! !|||! !!! !.!!..!:!!!!:!..:!! !||| ! |||::: !! GlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysT 620 : GGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAA : 685 110 : ysIleLysAsnCysIleGluGlnIleGlnAsnAspTrpGluGlnValLysLeuTyrGluAspAr : 130 ||| ! :!!! !:!!.!.!!.!!::!!!.!||||||..! !..! ||| :: hrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLy 686 : CCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaa : 748 131 : gGluMetMetLeuLysTyrGlyGlnValGlyArgAsnLeuThrIleIleCysAlaValPheMet : 151 :|||:::||||||||||||!.!:!! !!.!!||| !! !.!!|||.!!||||||:!!|||!!: sGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIle 749 : agaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATA : 811 152 : TyrThrGlyGlyIleIleTyr : 158 :!! !||| !:!! !||| HisGlyGlyIleLeuGlyTyr 812 : CACGGTGGTATACTTGGATAT : 834 vulgar: AmOr60 23 158 . LHQN01028951.1 429 834 + 209 M 135 405 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 430 834 209 + . gene_id 1 ; sequence AmOr60 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 430 834 . + . LHQN01028951.1 exonerate:protein2genome:local exon 430 834 . + . insertions 0 ; deletions 0 LHQN01028951.1 exonerate:protein2genome:local similarity 430 834 209 + . alignment_id 1 ; Query AmOr60 ; Align 430 24 405 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr59 Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 230 Query range: 3 -> 154 Target range: 369 -> 822 4 : IleThrLeuAsnGluSerAspCysLysAlaArgAsnLeuLysTyrLysGluAspIleAlaTyrV : 25 :!!|||:!!!:!.!...! ! ! !!.!! !.!.:!!!!. ! ! ..!! !! !||| ValThrMetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrS 370 : GTCACGATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACA : 433 26 : alThrLysHisAsnLysTrpIleLeuLysSerIleGlyIleTrpProSerIlePheLysAspVa : 46 ! !:!! |||::!||| :!!||||||||||||! !||||||..!.!!! ..!:!!:! erLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerAsnLe 434 : GTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGAACCT : 496 47 : lSerLysPheLeuProLysIleMetPheGlyLeuCysAsnPheValLeuPhePheAlaIleIle : 67 !..!!:! !:!! !!::!|||:!: !! !:!!||| !! !!.!:!!.!.|||:!!|||||| uGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIle 497 : CGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATC : 559 68 : ProCysIleLeuTyrIleValIleGluGluAsnAspThrMetIleArgPheLysLeuPheGlyL : 89 |||||| |||:!!:!!:!!:!:|||:!!... ! ! ! !:! ! |||:!!.!!|||! ProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyS 560 : CCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTT : 625 90 : euLeuSerPheCysLeuValAlaLeuIleLysTyrTrpThrLeuLeuTyrArgLysSerArgIl : 110 !|||||| !!! :!! !!..!:!!|||!..||| ! !|||||| |||:::!.!! !|| erLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIl 626 : CGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCAT : 688 111 : eLysAsnCysValGluGlnIleTrpIleAspTrpGluGlnValGluLeuTyrGluAspArgGlu : 131 | ! :!!! !|||.!.!!.!!: !! !||||||..! !..! ||| :::||| eHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGlu 689 : ACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaa : 751 132 : MetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuMetIleIleCysAlaMetPheThrTyrT : 153 :::||||||||||||!.!:!!.!..!!||| !! ! !|||.!!||||||!!:|||! !:!! ValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisG 752 : gtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACACG : 817 154 : hrGly : 154 !||| lyGly 818 : GTGGT : 822 vulgar: AmOr59 3 154 . LHQN01028951.1 369 822 + 230 M 151 453 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 370 822 230 + . gene_id 1 ; sequence AmOr59 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 370 822 . + . LHQN01028951.1 exonerate:protein2genome:local exon 370 822 . + . insertions 0 ; deletions 0 LHQN01028951.1 exonerate:protein2genome:local similarity 370 822 230 + . alignment_id 1 ; Query AmOr59 ; Align 370 4 453 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr58 Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 182 Query range: 13 -> 157 Target range: 402 -> 834 14 : AsnLeuAsnTyrGluLysAspIleValTyrValThrLysHisAsnLysTrpIleLeuAsnSerI : 35 .!.:!!||| ..!! !! !||| ! !:!! |||::!||| :!!!!.|||| GluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerI 403 : GAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCA : 466 36 : leGlyIleTrpProThrValLeuLysGlyIleAspGluTyrLeuProLysIleAlaIleAlaLe : 56 |||||! !|||||| ! !!! !..!..!:!!!!:..! !!:!! !!::!||| !! !!.!:! leGlyThrTrpProGlnPheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIl 467 : TAGGCACATGGCCACAGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGAT : 529 57 : uSerAsnLeuValLeuSerPheThrValIleGlnCysValLeuHisIleLeuLeuGluGlnLys : 77 !!!! !! !!.!:!! !|||:!!:!!|||! ||| !||||||:!!:!!||||||:!! ! eCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGly 530 : CTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGG : 592 78 : AspProIleLeuArgLeuLysIleLeuGlyLeuThrPhePheSerPheIleSerLeuMetLysT : 99 ! ! ! !!:!:!!||||||||||||! ! ! ! !!!! ! .!!!!!:!!!!:!..| ThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerT 593 : ACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTT : 658 100 : yrTrpValLeuThrMetArgLysProLysIleLysLeuCysIleGluGlnIleGlnHisAspTr : 120 || :!!||| !:!!|||::: !! ||| ! ! !! !:!!.!.!!.!!::!! !||||| yrThrMetLeuLeuLeuArgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTr 659 : ACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTG : 721 121 : pLysGlnValGluPheGluArgAspArgLysLeuMetLeuLysTyrGlyIleIleGlyArgAsn : 141 |!:! !..! :::... :::::::::||||||||||||!.!! !.!!.!!||| !! pArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyr 722 : GAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATAC : 784 142 : LeuSerMetTyrSerIleValPheMetTyrSerGlyGlyIleIleTyr : 157 !:!!!!:!:!!!! :!!|||!!::!!.!!||| !:!! !||| AlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleLeuGlyTyr 785 : GCGGCGATTTTTTGTGCGATTTTCATACACGGTGGTATACTTGGATAT : 834 vulgar: AmOr58 13 157 . LHQN01028951.1 402 834 + 182 M 144 432 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 403 834 182 + . gene_id 1 ; sequence AmOr58 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 403 834 . + . LHQN01028951.1 exonerate:protein2genome:local exon 403 834 . + . insertions 0 ; deletions 0 LHQN01028951.1 exonerate:protein2genome:local similarity 403 834 182 + . alignment_id 1 ; Query AmOr58 ; Align 403 14 432 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 386 Query range: 15 -> 165 Target range: 423 -> 867 16 : SerAsnTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerP : 37 |||:!!||||||:!!|||! !||||||||| :!!||| !||||||.!!||||||! !! ! SerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheS 424 : AGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCT : 487 38 : roSerThrThrLysLeuGluLysIleIleSerIleValLeuIleIleCysCysTyrSerSerIl : 58 !!||| !!.||||||!:!! !|||||| !:!!|||! !:!: !||||||!!!:!!|| erSer------AsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIl 488 : CGTCG------AACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAAT : 544 59 : eCysPheThrValIleProCysLeuLeuHisValMetLeuGluAspGluSerPheArgAspLys : 79 | |||:!!:!!|||||||||! !||||||:!!||||||||| ! ! !!!!||| ! ||| eLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLys 545 : ACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAA : 607 80 : LeuLysValLeuGlyProLeuSerHisTrpPheIleGlyAlaIleAsnTyrThrThrLeuLeuL : 101 :!!|||:!!|||||| !!|||||||||||| ! .!! !! !|||!:!||||||! !||||||| ValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuL 608 : GTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGC : 673 102 : euArgSerLysGluIleArgTyrCysIleGluHisMetGlnArgAspTrpArgIleValThrAr : 122 ||||| !!||| |||!.!:!!! !:!!.!.||||||:!!! !|||||||||! ..!||||| euArgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrAr 674 : TGCGACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgag : 736 123 : gThrGluAspGlnGlnIleMetMetLysHisAlaLysIleGlyArgTyrIleAlaValPheSer : 143 | ||| :::::::::|||:!!|||:!!||||||.!!.!!|||||| |||:!!|||!!! gLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCys 737 : aaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGT : 799 144 : AlaAlaPheMetGlnGlyGlyValLeuSerAsnCysAlaValThrAlaPheSerThrGlnThrI : 165 ||| !|||!!:!!.||||||:!!|||.!! !!|||!.!:!!||||||! !!!!|||..!..!: AlaIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaSerThrThrMetValV 800 : GCGATTTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTG : 865 166 : le : 165 !! al 866 : TC : 867 vulgar: AmOr32 15 165 . LHQN01028951.1 423 867 + 386 M 23 69 G 2 0 M 125 375 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 424 867 386 + . gene_id 1 ; sequence AmOr32 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 424 867 . + . LHQN01028951.1 exonerate:protein2genome:local exon 424 867 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 424 867 386 + . alignment_id 1 ; Query AmOr32 ; Align 424 16 69 ; Align 493 41 375 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 340 Query range: 15 -> 156 Target range: 423 -> 840 16 : SerGluTyrSerIleGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProAlaSerP : 37 |||!!:||||||:!!|||!::||||||||| :!!||| !||||||.!!|||||| ! SerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGln---- 424 : AGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAG---- : 484 38 : heTyrLysSerArgIleGluLysIleValSerLysIleLeuIleValIleCysTrpIleSerSe : 58 !:!..!|||!.!:!!|||!:!! !:!!|||::!||||||! !|||||||||!::! !:!!! --PheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIl 485 : --TTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAAT : 544 59 : rLeuPheThrLeuIleProGlyValLeuHisPhePheLeuGluLysGluAspIleTyrValLys : 79 !||||||:!!:!!|||||| !! !||||||.!..!.|||||||||! ! !.!!|||..!||| eLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLys 545 : ACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAA : 607 80 : LeuLysIleLeuGlyProLeuThrHisTrpLeuValGlyGlyPheAsnTyrAlaValLeuLeuL : 101 :!!|||||||||||| !!|||!:!||||||:!! !! !! !.!!!:!|||.!!:!!||||||| ValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuL 608 : GTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGC : 673 102 : euArgLysAspAspIleTyrTyrCysIleLysGlnIleCysAlaAspTrpAsnIleIleThrLy : 122 |||||::: ! !|||:!!:!!! !:!!!!.!!.!!: .!!||||||!..! ! |||:: euArgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrAr 674 : TGCGACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgag : 736 123 : sLysGlnAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaValPheCys : 143 :|||::: ::::::|||||||||||| !!||||||.!!.!!||||||!.!|||:!!|||||| gLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCys 737 : aaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGT : 799 144 : ThrValPheLeuGlnGlyGlyValPheCysThrCysLeu : 156 .!!:!!|||:!!!!.||||||:!!.!! ! !|||:!! AlaIlePheIleHisGlyGlyIleLeuGlyTyrCysVal 800 : GCGATTTTCATACACGGTGGTATACTTGGATATTGTGTT : 840 vulgar: AmOr49 15 156 . LHQN01028951.1 423 840 + 340 M 20 60 G 2 0 M 119 357 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 424 840 340 + . gene_id 1 ; sequence AmOr49 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 424 840 . + . LHQN01028951.1 exonerate:protein2genome:local exon 424 840 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 424 840 340 + . alignment_id 1 ; Query AmOr49 ; Align 424 16 60 ; Align 484 38 357 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 247 Query range: 2 -> 157 Target range: 384 -> 843 3 : AspAspIleValAlaValGlnLysLysPheGlySerLeuAsnGluTyrSerIleGlnLeuAsnA : 24 ||| ! ! !|||!.!..!:!!! !!..!. !:!! !!:!!!:||||||:!!|||! !|||| AspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnA 385 : GACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATC : 448 25 : rgTrpLeuSerLysMetIleGlyValTrpProLeuProSerPheThrSerLysPheGluLysIl : 45 ||||| !! !|||! ||||||..!||| |||..!|||:!!|||!!..!!|||!:!! rgTrpAlaMetLysSerIleGlyThrTrp------ProGlnPheSerSerAsnLeuGluArgAs 449 : GATGGGCGATGAAAAGCATAGGCACATGG------CCACAGTTCTCGTCGAACCTCGAGAGAAA : 505 46 : eMetThrLysIleLeuIlePhePheTyrTrpIleIleLeuLeuPheIleIleLeuAlaSerSer : 66 !!!::!!::!||||||! ! ! .!!! !!::! ! !:!!|||||| |||:!! !!!!!||| nIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSer 506 : CATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCG : 568 67 : LeuHisPheLeuPheValLysGluAspIleValSerLysLeuLysThrLeuGlyProIleSerT : 88 ||||||.!.:!!.!.! !|||! ! !.!! !!!!|||:!!|||! !|||||| !!:!:|||: LeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuSerH 569 : TTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCC : 634 89 : yrCysPheGlyGlyGlyPheAsnTyrAlaValLeuLeuLeuArgLysAsnAspIleArgTyrCy : 109 !!!! ! ! !! !.!!!:!|||.!!:!!||||||||||||:::!!. !|||!.!:!!! isTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPh 635 : ACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTT : 697 110 : sIleGluHisIleGluThrAspTrpLysIleIleLysArgMetGluAspGlnGlnValMetLeu : 130 !:!!.!.|||!!:||||||||||||!:!! ! ||| ||| ::::::||||||||| eValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeu 698 : TGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTG : 760 131 : LysSerAlaLysIleGlyArgIleIleSerGlyCysIleAlaGlyPheMetHisIleGlyThrP : 152 |||! !||||||.!!.!!||| ! :!! !! ! !||| !|||!!:||| !|||! !. LysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleL 761 : AAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACACGGTGGTATAC : 826 153 : heCysPheCysIleVal : 157 !! ! !:!|||:!!:!! euGlyTyrCysValMet 827 : TTGGATATTGTGTTATG : 843 vulgar: AmOr48 2 157 . LHQN01028951.1 384 843 + 247 M 31 93 G 2 0 M 122 366 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 385 843 247 + . gene_id 1 ; sequence AmOr48 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 385 843 . + . LHQN01028951.1 exonerate:protein2genome:local exon 385 843 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 385 843 247 + . alignment_id 1 ; Query AmOr48 ; Align 385 3 93 ; Align 478 36 366 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 231 Query range: 0 -> 158 Target range: 375 -> 843 1 : MetMetAlaAspAspIleAlaAlaIleGlnLysLysPheGlySerLeuAsnGluTyrSerIleG : 22 |||! !||| ! ! !!.!!.!! !:!!! !!..!. !:!! !!:!!!:||||||:!!| MetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuG 376 : ATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCC : 439 23 : lnLeuAsnArgTrpPheSerLysThrIleGlyValTrpProLeuProSerSerThrSerLysLe : 43 ||! !||||||||| ! !|||!:!||||||..!||| |||..!! !:!!|||!!.|| lnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrp------ProGlnPheSerSerAsnLe 440 : AGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGG------CCACAGTTCTCGTCGAACCT : 496 44 : uGluLysIleMetThrLysIleLeuIlePheLeuCysTrpIleIleAlaLeuPheValIleIle : 64 ||||!:!! !!!::!!::!||||||! ! ! :!!|||!::! ! ! !|||||| !|||||| uGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIle 497 : CGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATC : 559 65 : SerSerLeuLeuTyrPheAlaLeuValLysGluAspIleIleSerLysLeuLysThrLeuGlyP : 86 !!!!!! !|||:!!.!. !|||! !|||! ! !.!! !!!!|||:!!|||! !|||||| ProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyS 560 : CCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTT : 625 87 : roIleSerTyrCysPheGlyGlyGlyLeuAsnTyrAlaValLeuLeuLeuArgLysAsnAspIl : 107 !!:!:|||:!!!! ! ! !! !:!!!:!|||.!!:!!||||||||||||:::!!. !|| erLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIl 626 : CGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCAT : 688 108 : eArgTyrCysIleAspHisIleGluThrAspTrpLysAlaIleThrArgThrGlyAspArgGln : 128 |!.!:!!! !:!!:!!|||!!:||||||||||||!:!.!!! |||||| :::::: eHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGlu 689 : ACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaa : 751 129 : ValMetPheLysAsnAlaLysIleGlyArgIleIleSerGlyCysValAlaGlyPheLeuGlnL : 150 ||||||!!.||| !!||||||.!!.!!||| ! :!! !! ! !||| !|||:!!!!. ValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisG 752 : gtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACACG : 817 151 : euSerThrIleSerPheCysThrVal : 158 !.!!! !:!!.!!!:!|||..!:!! lyGlyIleLeuGlyTyrCysValMet 818 : GTGGTATACTTGGATATTGTGTTATG : 843 vulgar: AmOr43 0 158 . LHQN01028951.1 375 843 + 231 M 34 102 G 2 0 M 122 366 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 376 843 231 + . gene_id 1 ; sequence AmOr43 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 376 843 . + . LHQN01028951.1 exonerate:protein2genome:local exon 376 843 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 376 843 231 + . alignment_id 1 ; Query AmOr43 ; Align 376 1 102 ; Align 478 37 366 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 254 Query range: 0 -> 158 Target range: 375 -> 843 1 : MetMetAlaAspAspIleAlaThrValGlnLysGluPheAsnAsnLeuAsnGluTyrSerIleG : 22 |||! !||| ! ! !!.!..!..!:!!! .!..!.!.! ! !!:!!!:||||||:!!| MetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuG 376 : ATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCC : 439 23 : lnPheAsnLysTrpPheSerLysThrIleGlyValTrpProLeuProSerSerThrSerLysPh : 43 ||!::|||::!||| ! !|||!:!||||||..!||| |||..!! !:!!|||!!..! lnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrp------ProGlnPheSerSerAsnLe 440 : AGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGG------CCACAGTTCTCGTCGAACCT : 496 44 : eGluLysIleValThrArgIleLeuIleIleValCysSerIleIleThrLeuPheValIleIle : 64 !|||!:!! !:!!:!!|||||||||! !:!::!!|||! !! ! !! !|||||| !|||||| uGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIle 497 : CGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATC : 559 65 : ProSerMetLeuHisPheIleLeuValLysGluAspIleIleSerLysLeuLysSerLeuGlyP : 86 |||!!! !||||||.!.!!:|||! !|||! ! !.!! !!!!|||:!!|||! !|||||| ProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyS 560 : CCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTT : 625 87 : roIleSerTyrCysPheGlyGlyGlyLeuAsnTyrAlaValLeuLeuLeuArgLysAsnAspIl : 107 !!:!:|||:!!!! ! ! !! !:!!!:!|||.!!:!!||||||||||||:::!!. !|| erLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIl 626 : CGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCAT : 688 108 : eArgTyrCysIleAspHisIleGluThrAspTrpLysValIleThrArgMetThrAspArgGln : 128 |!.!:!!! !:!!:!!|||!!:||||||||||||!:!..!! |||||| :::::: eHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGlu 689 : ACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaa : 751 129 : ValMetLeuLysAsnAlaLysIleGlyArgIleIleSerCysCysIleValGlyPheLeuGlnI : 150 |||||||||||| !!||||||.!!.!!||| ! :!! !! ! !!.! !|||:!!!!. ValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisG 752 : gtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACACG : 817 151 : leGlyThrPheCysPheCysThrIle : 158 !|||! !.!! ! !:!|||..!!!: lyGlyIleLeuGlyTyrCysValMet 818 : GTGGTATACTTGGATATTGTGTTATG : 843 vulgar: AmOr38 0 158 . LHQN01028951.1 375 843 + 254 M 34 102 G 2 0 M 122 366 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 376 843 254 + . gene_id 1 ; sequence AmOr38 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 376 843 . + . LHQN01028951.1 exonerate:protein2genome:local exon 376 843 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 376 843 254 + . alignment_id 1 ; Query AmOr38 ; Align 376 1 102 ; Align 478 37 366 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr53 Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 195 Query range: 23 -> 161 Target range: 429 -> 834 24 : TyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpProLeuIleTyrAsnG : 45 |||!:!|||||| ! !!:!||| !:!!||| !||||||..!||||||! !.!! TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPhe------- 430 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTC------- : 487 46 : lnThrSerArgPheGluGlnLeuIleSerIleIleLeuMetGlyThrCysPheSerSerLeuLe : 66 :!!|||!.!.!!|||::! !|||||| !||||||! ! !! !|||!:!!!!:!!:!!|| --SerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLe 488 : --TCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACT : 547 67 : uPheIleIleLeuProSerGlyHisHisIleLeuPheValGluLysAsnLeuHisMetLysVal : 87 |||| |||:!!|||!!!..! |||:!!:!!.!.! !:!! !!.!!!!:!!! !|||||| uPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysVal 548 : ATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTG : 610 88 : LysAlaPheGlyProAlaGlyPheCysLeuSerSerThrIleLysTyrCysTyrLeuGlyLeuL : 109 ||| !.!!||| !! !.!! !!! :!!! !!!!! !|||!..||| ! ||| !|||: LysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuA 611 : AAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGC : 676 110 : ysGlySerSerPheGluArgCysIleGluHisMetArgLysAspTrpMetMetValGlnAspPr : 130 :! !!!.!!!!.!..!.!.!! !:!!.!.||||||..!! ||||||! ! !..! rgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLy 677 : GACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaa : 739 131 : oAsnHisArgThrIleMetLeuLysTyrAlaThrIleSerArgLysLeuIleThrMetCysAla : 151 ... ::: :::|||||||||||||||! !.!!|||||| ! ! ! !.!.|||||| sGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAla 740 : ggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCG : 802 152 : ValPheLeuTyrThrGlyGlyMetSerTyr : 161 :!!|||:!!:!! !||| !:!:.!!||| IlePheIleHisGlyGlyIleLeuGlyTyr 803 : ATTTTCATACACGGTGGTATACTTGGATAT : 834 vulgar: AmOr53 23 161 . LHQN01028951.1 429 834 + 195 M 19 57 G 3 0 M 116 348 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 430 834 195 + . gene_id 1 ; sequence AmOr53 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 430 834 . + . LHQN01028951.1 exonerate:protein2genome:local exon 430 834 . + . insertions 0 ; deletions 3 LHQN01028951.1 exonerate:protein2genome:local similarity 430 834 195 + . alignment_id 1 ; Query AmOr53 ; Align 430 24 57 ; Align 487 46 348 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 308 Query range: 15 -> 155 Target range: 423 -> 837 16 : SerGluTyrSerIleLysLeuSerArgTrpTyrLeuLysProLeuGlyAlaTrpProAlaSerS : 37 |||!!:||||||:!!:!!! !!:!|||||| :!!||| !:!!|||.!!|||||| !! !| SerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheS 424 : AGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCT : 487 38 : erSerThrThrLysMetGluArgIleIleSerGlnIleLeuIleValIleCysTrpCysIleIl : 58 ||||| !!.:!:||||||! !||||||!:!||||||! !|||||||||!:: ! !|| erSer------AsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIl 488 : CGTCG------AACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAAT : 544 59 : eLeuPheThrValIleProGlyIleLeuTyrIleLeuPheValLysGlnAspIleTyrValLys : 79 |||||||:!!:!!|||||| !! |||:!!:!!:!!.!.! !||| ! !.!!|||..!||| eLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLys 545 : ACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAA : 607 80 : LeuLysIlePheGlyProLeuSerHisTrpCysIleAspGlyPheAsnTyrAlaIleLeuLeuL : 101 :!!||||||.!!||| !!|||||||||||| .!! ! !.!!!:!|||.!!!!:||||||| ValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuL 608 : GTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGC : 673 102 : euArgLysAsnAspIleLeuHisCysIleGluHisLeuArgAlaAspTrpLysLeuIleThrAr : 122 |||||:::!!. !|||! !|||! !:!!.!.|||:!!..!.!!||||||!:! !! ||||| euArgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrAr 674 : TGCGACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgag : 736 123 : gThrGlnAspGlnGlnValMetLeuArgAsnAlaLysMetGlyArgTyrIleAlaAlaPheCys : 143 | ::: ::::::|||||||||!:! !!||||||.!..!!|||||| ||| !|||||| gLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCys 737 : aaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGT : 799 144 : AlaIlePheMetGlnValIleIlePhePheThrCys : 155 |||||||||!!:!!.! ! !|||.!! !||| AlaIlePheIleHisGlyGlyIleLeuGlyTyrCys 800 : GCGATTTTCATACACGGTGGTATACTTGGATATTGT : 837 vulgar: AmOr50 15 155 . LHQN01028951.1 423 837 + 308 M 23 69 G 2 0 M 115 345 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 424 837 308 + . gene_id 1 ; sequence AmOr50 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 424 837 . + . LHQN01028951.1 exonerate:protein2genome:local exon 424 837 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 424 837 308 + . alignment_id 1 ; Query AmOr50 ; Align 424 16 69 ; Align 493 41 345 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 337 -> 383 Target range: 212 -> 74 338 : GluGlnCysLysMetIleGlyGluAlaValTyrMetThrAsnTrpTyrTyrLeuProGlyLysA : 359 |||:!! !! ! :!!|||! ! !||||||||||||.!.|||||| ||| !! !||| GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 360 : spIleLeuAsnLeuValGlnIleIleLeuArgSerSerMetValIleLysIleThrAlaGlyLy : 380 ! !|||..!!!!|||..!||||||! !||||||||||||||||||||||||||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 381 : sLeuValHis : 383 |!!!|||:!! sPheValTyr 85 : ATTCGTATAC : 75 vulgar: AmOr32 337 383 . LHQN01029187.1 212 74 - 126 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 75 212 126 - . gene_id 1 ; sequence AmOr32 ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 75 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 75 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 75 212 126 - . alignment_id 1 ; Query AmOr32 ; Align 213 338 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 335 -> 379 Target range: 215 -> 83 336 : MetGluGlnCysArgLysValGlyGluValLeuTyrMetThrAsnTrpTyrTyrLeuProTyrL : 357 !!:|||:!! !! !|||||||||! ! !:!!|||||||||.!.|||||| ||| !! ! | IleGluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnL 215 : ATCGAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAA : 152 358 : ysAspIleLeuAspLeuIleLeuIleIleSerArgSerAsnAlaValIleLysIleThrAlaGl : 378 || ! !|||! !!!!:!!:!!|||||||||||||||!:! !|||||||||||||||||||| ysThrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGl 151 : AAACTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGG : 89 379 : yLys : 379 |||| yLys 88 : AAAA : 84 vulgar: AmOr31 335 379 . LHQN01029187.1 215 83 - 122 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 84 215 122 - . gene_id 1 ; sequence AmOr31 ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 84 215 . - . LHQN01029187.1 exonerate:protein2genome:local exon 84 215 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 84 215 122 - . alignment_id 1 ; Query AmOr31 ; Align 216 336 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 334 -> 379 Target range: 212 -> 77 335 : GluArgCysLysGluIleGlyAsnMetValTyrMetThrAsnTrpTyrHisLeuProAspLysA : 356 |||..! !! :!!:!!|||...! ||||||||||||.!.||||||!..||| !!.!.||| GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 357 : spIlePheAsnLeuIleMetIleIleValArgSerGlyValGluTyrLysMetThrAlaGlyLy : 377 ! !.!!..!!!!:!!||||||||| !||||||.!!:!!! ! |||!!:||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 378 : sIleIle : 379 |.!!:!! sPheVal 85 : ATTCGTA : 78 vulgar: AmOr48 334 379 . LHQN01029187.1 212 77 - 107 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 78 212 107 - . gene_id 1 ; sequence AmOr48 ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 78 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 78 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 78 212 107 - . alignment_id 1 ; Query AmOr48 ; Align 213 335 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 335 -> 380 Target range: 212 -> 77 336 : GluLysCysLysLysIleSerAsnMetIleTyrMetThrAsnTrpTyrArgLeuSerGluLysA : 357 |||:!! !! |||:!!.!!...! :!:|||||||||.!.|||||||||||||||:!!||| GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 358 : spIleLeuAsnLeuIleMetIleMetIleArgSerGlyMetGluTyrLysMetThrAlaGlyLy : 378 ! !|||..!!!!:!!||||||!!: !||||||.!!|||! ! |||!!:||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 379 : sIleIle : 380 |.!!:!! sPheVal 85 : ATTCGTA : 78 vulgar: AmOr43 335 380 . LHQN01029187.1 212 77 - 122 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 78 212 122 - . gene_id 1 ; sequence AmOr43 ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 78 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 78 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 78 212 122 - . alignment_id 1 ; Query AmOr43 ; Align 213 336 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 334 -> 379 Target range: 212 -> 77 335 : GluLysCysLysGluIleGlyAsnIleValTyrMetThrAsnTrpTyrArgLeuSerAspLysA : 356 |||:!! !! :!!:!!|||...! !||||||||||||.!.|||||||||||||||.!.||| GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 357 : spIleLeuAsnLeuIleMetIleIleIleArgSerSerValGluTyrLysMetThrAlaGlyLy : 377 ! !|||..!!!!:!!||||||||| !|||||||||:!!! ! |||!!:||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 378 : sIleIle : 379 |.!!:!! sPheVal 85 : ATTCGTA : 78 vulgar: AmOr41 334 379 . LHQN01029187.1 212 77 - 124 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 78 212 124 - . gene_id 1 ; sequence AmOr41 ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 78 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 78 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 78 212 124 - . alignment_id 1 ; Query AmOr41 ; Align 213 335 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 335 -> 380 Target range: 212 -> 77 336 : GluArgCysLysGluIleGlyAspMetValTyrMetThrAsnTrpTyrArgLeuProLysLysA : 357 |||..! !! :!!:!!|||! ! ||||||||||||.!.|||||||||||| !!:!!||| GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 358 : spIleLeuAsnLeuIleMetIleIleThrArgSerSerValGluTyrLysMetThrAlaGlyLy : 378 ! !|||..!!!!:!!|||||||||:!!|||||||||:!!! ! |||!!:||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 379 : sIleIle : 380 |.!!:!! sPheVal 85 : ATTCGTA : 78 vulgar: AmOr38 335 380 . LHQN01029187.1 212 77 - 123 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 78 212 123 - . gene_id 1 ; sequence AmOr38 ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 78 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 78 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 78 212 123 - . alignment_id 1 ; Query AmOr38 ; Align 213 336 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 333 -> 378 Target range: 212 -> 77 334 : GluGlnCysGlnLysValGlyGluMetThrTyrMetIleGluTrpTyrArgLeuThrGlyLysL : 355 |||:!! ! |||||||||! !! ..!||||||! !|||||||||||||||:!! !|||! GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 356 : ysLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleLysPheThrAlaGlyAs : 376 ||| !!! !|||:!!||||||:!!! |||!:!! ! !||||||.!!|||||||||!! hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 377 : nMetVal : 378 ..!.||| sPheVal 85 : ATTCGTA : 78 vulgar: AmOr30 333 378 . LHQN01029187.1 212 77 - 105 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 78 212 105 - . gene_id 1 ; sequence AmOr30 ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 78 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 78 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 78 212 105 - . alignment_id 1 ; Query AmOr30 ; Align 213 334 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 336 -> 381 Target range: 212 -> 77 337 : GluGlnCysLysLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspLysA : 358 |||:!! !! |||||||||! ! ||||||||||||.!.||||||!:!||| !!.!.||| GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 359 : spIleLeuAsnLeuIleMetIleIleSerArgSerSerValGluValLysIleThrAlaGlyLy : 379 ! !|||..!!!!:!!|||||||||||||||||||||:!!! !:!!||||||||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 380 : sIleIle : 381 |.!!:!! sPheVal 85 : ATTCGTA : 78 vulgar: AmOr50 336 381 . LHQN01029187.1 212 77 - 135 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 78 212 135 - . gene_id 1 ; sequence AmOr50 ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 78 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 78 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 78 212 135 - . alignment_id 1 ; Query AmOr50 ; Align 213 337 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 334 -> 377 Target range: 212 -> 83 335 : GluGluCysLysLysIleGlyAspIleValTyrMetThrAsnTrpTyrGluLeuSerAspLysA : 356 |||||| !! |||:!!|||! ! !||||||||||||.!.||||||..!||||||.!.|||! GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 357 : snIleLeuAsnLeuMetMetIleIleThrArgSerSerMetAsnIleAsnMetThrAlaGlyLy : 377 .! !|||..!!!!:!:|||||||||:!!|||||||||||| |||!!.!!:||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 378 : s : 377 | s 85 : A : 84 vulgar: AmOr49 334 377 . LHQN01029187.1 212 83 - 128 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 84 212 128 - . gene_id 1 ; sequence AmOr49 ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 84 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 84 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 84 212 128 - . alignment_id 1 ; Query AmOr49 ; Align 213 335 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr32 Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 342 -> 383 Target range: 124 -> 247 343 : IleGlyGluAlaValTyrMetThrAsnTrpTyrTyrLeuProGlyLysAspIleLeuAsnLeuV : 364 :!!|||! ! !||||||||||||.!.|||||| ||| !! !||| ! !|||..!|||| ValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGlyLeuV 125 : GTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGGTTTGG : 188 365 : alGlnIleIleLeuArgSerSerMetValIleLysIleThrAlaGlyLysLeuValHis : 383 ||..!||||||! !||||||||||||||||||||||||||||||||||||!!!|||:!! alMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheValTyr 189 : TAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTATAC : 247 vulgar: AmOr32 342 383 . LHQN01048470.1 124 247 + 126 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 125 247 126 + . gene_id 1 ; sequence AmOr32 ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 125 247 . + . LHQN01048470.1 exonerate:protein2genome:local exon 125 247 . + . insertions 0 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 125 247 126 + . alignment_id 1 ; Query AmOr32 ; Align 125 343 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr31 Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 337 -> 379 Target range: 112 -> 238 338 : GlnCysArgLysValGlyGluValLeuTyrMetThrAsnTrpTyrTyrLeuProTyrLysAspI : 359 :!! !! !|||||||||! ! !:!!|||||||||.!.|||||| ||| !! ! ||| ! GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrA 113 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTG : 176 360 : leLeuAspLeuIleLeuIleIleSerArgSerAsnAlaValIleLysIleThrAlaGlyLys : 379 !|||! !|||:!!:!!|||||||||||||||!:! !|||||||||||||||||||||||| laLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLys 177 : CTCTCGGTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAA : 238 vulgar: AmOr31 337 379 . LHQN01048470.1 112 238 + 120 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 113 238 120 + . gene_id 1 ; sequence AmOr31 ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 113 238 . + . LHQN01048470.1 exonerate:protein2genome:local exon 113 238 . + . insertions 0 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 113 238 120 + . alignment_id 1 ; Query AmOr31 ; Align 113 338 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr48 Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 338 -> 379 Target range: 121 -> 244 339 : GluIleGlyAsnMetValTyrMetThrAsnTrpTyrHisLeuProAspLysAspIlePheAsnL : 360 :!!:!!|||...! ||||||||||||.!.||||||!..||| !!.!.||| ! !.!!..!| LysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGlyL 122 : AAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGGTT : 185 361 : euIleMetIleIleValArgSerGlyValGluTyrLysMetThrAlaGlyLysIleIle : 379 ||:!!||||||||| !||||||.!!:!!! ! |||!!:||||||||||||.!!:!! euValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheVal 186 : TGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTA : 244 vulgar: AmOr48 338 379 . LHQN01048470.1 121 244 + 108 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 122 244 108 + . gene_id 1 ; sequence AmOr48 ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 122 244 . + . LHQN01048470.1 exonerate:protein2genome:local exon 122 244 . + . insertions 0 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 122 244 108 + . alignment_id 1 ; Query AmOr48 ; Align 122 339 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr43 Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 339 -> 390 Target range: 121 -> 280 340 : LysIleSerAsnMetIleTyrMetThrAsnTrpTyrArgLeuSerGluLysAspIleLeuAsnL : 361 |||:!!.!!...! :!:|||||||||.!.|||||||||||||||:!!||| ! !|||..!| LysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGlyL 122 : AAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGGTT : 185 362 : euIleMetIleMetIleArgSerGlyMetGluTyrLysMetThrAlaGlyLysIleIle<-><- : 381 ||:!!||||||!!: !||||||.!!|||! ! |||!!:||||||||||||.!!:!! euValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheValTyr** 186 : TGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTATACTG : 248 382 : >AsnMetSerValValThrPheGlyAsnIle : 390 !.. !||||||!.!|||||||||:!!:!: *ThrSerSerValAlaThrPheGlyAspVal 249 : AACATCGTCTGTCGCAACATTTGGCGATGTG : 280 vulgar: AmOr43 339 390 . LHQN01048470.1 121 280 + 124 M 41 123 G 0 6 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 122 280 124 + . gene_id 1 ; sequence AmOr43 ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 122 280 . + . LHQN01048470.1 exonerate:protein2genome:local exon 122 280 . + . insertions 6 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 122 280 124 + . alignment_id 1 ; Query AmOr43 ; Align 122 340 123 ; Align 251 381 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr41 Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 338 -> 379 Target range: 121 -> 244 339 : GluIleGlyAsnIleValTyrMetThrAsnTrpTyrArgLeuSerAspLysAspIleLeuAsnL : 360 :!!:!!|||...! !||||||||||||.!.|||||||||||||||.!.||| ! !|||..!| LysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGlyL 122 : AAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGGTT : 185 361 : euIleMetIleIleIleArgSerSerValGluTyrLysMetThrAlaGlyLysIleIle : 379 ||:!!||||||||| !|||||||||:!!! ! |||!!:||||||||||||.!!:!! euValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheVal 186 : TGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTA : 244 vulgar: AmOr41 338 379 . LHQN01048470.1 121 244 + 124 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 122 244 124 + . gene_id 1 ; sequence AmOr41 ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 122 244 . + . LHQN01048470.1 exonerate:protein2genome:local exon 122 244 . + . insertions 0 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 122 244 124 + . alignment_id 1 ; Query AmOr41 ; Align 122 339 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr38 Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 339 -> 380 Target range: 121 -> 244 340 : GluIleGlyAspMetValTyrMetThrAsnTrpTyrArgLeuProLysLysAspIleLeuAsnL : 361 :!!:!!|||! ! ||||||||||||.!.|||||||||||| !!:!!||| ! !|||..!| LysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGlyL 122 : AAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGGTT : 185 362 : euIleMetIleIleThrArgSerSerValGluTyrLysMetThrAlaGlyLysIleIle : 380 ||:!!|||||||||:!!|||||||||:!!! ! |||!!:||||||||||||.!!:!! euValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheVal 186 : TGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTA : 244 vulgar: AmOr38 339 380 . LHQN01048470.1 121 244 + 124 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 122 244 124 + . gene_id 1 ; sequence AmOr38 ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 122 244 . + . LHQN01048470.1 exonerate:protein2genome:local exon 122 244 . + . insertions 0 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 122 244 124 + . alignment_id 1 ; Query AmOr38 ; Align 122 340 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr49 Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 335 -> 377 Target range: 112 -> 238 336 : GluCysLysLysIleGlyAspIleValTyrMetThrAsnTrpTyrGluLeuSerAspLysAsnI : 357 ||| !! |||:!!|||! ! !||||||||||||.!.||||||..!||||||.!.|||!.! GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrA 113 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTG : 176 358 : leLeuAsnLeuMetMetIleIleThrArgSerSerMetAsnIleAsnMetThrAlaGlyLys : 377 !|||..!|||:!:|||||||||:!!|||||||||||| |||!!.!!:|||||||||||| laLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLys 177 : CTCTCGGTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAA : 238 vulgar: AmOr49 335 377 . LHQN01048470.1 112 238 + 127 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 113 238 127 + . gene_id 1 ; sequence AmOr49 ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 113 238 . + . LHQN01048470.1 exonerate:protein2genome:local exon 113 238 . + . insertions 0 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 113 238 127 + . alignment_id 1 ; Query AmOr49 ; Align 113 336 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr30 Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 334 -> 378 Target range: 112 -> 244 335 : GlnCysGlnLysValGlyGluMetThrTyrMetIleGluTrpTyrArgLeuThrGlyLysLysL : 356 :!! ! |||||||||! !! ..!||||||! !|||||||||||||||:!! !|||! GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrA 113 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTG : 176 357 : ysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleLysPheThrAlaGlyAsnMe : 377 ||| !!! |||:!!||||||:!!! |||!:!! ! !||||||.!!|||||||||!!..! laLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPh 177 : CTCTCGGTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATT : 239 378 : tVal : 378 .||| eVal 240 : CGTA : 244 vulgar: AmOr30 334 378 . LHQN01048470.1 112 244 + 101 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 113 244 101 + . gene_id 1 ; sequence AmOr30 ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 113 244 . + . LHQN01048470.1 exonerate:protein2genome:local exon 113 244 . + . insertions 0 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 113 244 101 + . alignment_id 1 ; Query AmOr30 ; Align 113 335 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr50 Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 337 -> 391 Target range: 112 -> 280 338 : GlnCysLysLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspLysAspI : 359 :!! !! |||||||||! ! ||||||||||||.!.||||||!:!||| !!.!.||| ! GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrA 113 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTG : 176 360 : leLeuAsnLeuIleMetIleIleSerArgSerSerValGluValLysIleThrAlaGlyLysIl : 380 !|||..!|||:!!|||||||||||||||||||||:!!! !:!!||||||||||||||||||.! laLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPh 177 : CTCTCGGTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATT : 239 381 : eIle<-><->ThrMetSerIleTyrThrPheGlyAsnIle : 391 !:!! ||| !|||:!! |||||||||:!!:!: eValTyr***ThrSerSerValAlaThrPheGlyAspVal 240 : CGTATACTGAACATCGTCTGTCGCAACATTTGGCGATGTG : 280 vulgar: AmOr50 337 391 . LHQN01048470.1 112 280 + 138 M 44 132 G 0 6 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 113 280 138 + . gene_id 1 ; sequence AmOr50 ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 113 280 . + . LHQN01048470.1 exonerate:protein2genome:local exon 113 280 . + . insertions 6 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 113 280 138 + . alignment_id 1 ; Query AmOr50 ; Align 113 338 132 ; Align 251 382 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr68 Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 234 -> 358 Target range: 1306928 -> 1306556 235 : LeuTyrGlyTyrAlaPheMetValGlnGluLysPheLysLysIleIleGlyIleGl : 253 ||||||.!! !.! ! |||...... ||| |||:!! !:!!|| LeuTyrSerValValAsnAspValAsnAsnLeuPheThrProIleValPheValGl 1306928 : TTATACAGCGTGGTGAATGatgtgaataatttatttactccCATCGTTTTCGTACA : 1306874 254 : nLeuLeuSerSerThrLeuValValCysPheIleLeuTyrLysLeuAlaAsnThrS : 272 |||||||!!!||| !:!!|||:!!|||!!.! ! !!:! !:!! !:!!!.!. nLeuLeuThrSerGlyIleValIleCysLeuSerGlyPheAlaValPheAspAsnA 1306873 : ACTTCTTACAAGCGGAATAGTAATTTGTTTAAGTGGATTCGCGGTTTTCGATAACG : 1306817 273 : erLeuIleSerThrLysPheLeuGluPheValLeuTyrLeuAlaCysMetMetThr : 290 .! ! !!||| ! .!!|||:!!!:!|||! !||||||:!!! !!: ! ! sp---AlaArgThrAspIleLeuLysTyrValSerTyrLeuSerSerIleTrpLeu 1306816 : AC---GCCCGTACCGATATTCTGAAATACGTATCTTATTTGTCCTCGATTTGGTTG : 1306766 291 : GlnIlePheValTyrCysTrpTyrGlyAsnGlnLeuLysLeuLysSerValGluVa : 309 |||:!!!!.:!!!::|||! ! !|||.!. ||| ! !:!!|||:!!|||:! GlnLeuLeuLeuTrpCysLeuProGlyGluIleLeuValGlnGluSerLeuGluIl 1306765 : CAACTTTTGTTATGGTGTTTGCCCGGTGAAATTCTCGTTCAAGAGAGTTTAGAAAT : 1306709 310 : lValAspThrIlePhe<->GluLeuAspTrpIleSerLeuAspAsnArgSerLysL : 327 !! ! !!..!:!!!:! .!.:!! ||| !!:!||| ! !! !:!!! eGlyHisValValTyrLeuAsnValProTrpTyrAsnLeuProProIleTyrGlnA 1306708 : AGGACACGTAGTCTACTTAAATGTACCATGGTACAATTTGCCGCCAATTTACCAGA : 1306652 328 : ysAspLeuIleAsnIleMetArgArgAlaMetAsnProIleGluLeuThrCysAla : 345 :! ! ||| !! !!:!!:! !||||||....!. ! !...:!!|||... ! rgLysLeuCysMetMetIleLeuArgAlaGlnGlnTyrCysSerIleThrAlaLeu 1306651 : GAAAACTTTGCATGATGATCCTTAGGGCACAACAATATTGCAGCATCACGGCATTA : 1306598 346 : TyrIlePheThrIleAspLeuArgThrPheValThrIle : 358 .!! |||:!:..!:!!!.!|||!!...!!:!:!: ThrPheArgThrLeuSerIleHisThrLeuThrSerVal 1306597 : ACGTTTCGAACGTTGTCTATTCACACGTTAACGAGCGTG : 1306557 vulgar: AmOr68 234 358 . KQ414608.1 1306928 1306556 - 100 M 38 114 G 1 0 M 41 123 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1306557 1306928 100 - . gene_id 1 ; sequence AmOr68 ; gene_orientation . KQ414608.1 exonerate:protein2genome:local cds 1306557 1306928 . - . KQ414608.1 exonerate:protein2genome:local exon 1306557 1306928 . - . insertions 3 ; deletions 1 KQ414608.1 exonerate:protein2genome:local similarity 1306557 1306928 100 - . alignment_id 1 ; Query AmOr68 ; Align 1306929 235 114 ; Align 1306815 274 123 ; Align 1306689 315 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 158 -> 222 Target range: 204023 -> 204215 159 : ArgIleLeuProPheAsnMetTrpLeuGluLeuProLeuSerIleThrProTyrPheG : 178 !:!:!!!!!||| ! ::: :::||| !||||||||||||| LysLeuPheProValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheG 204024 : AAGCTTTTTCCGGTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTG : 204081 179 : luValMetPhePheValGlnValValPheValTyrHisValCysValCysTyrHisCy : 197 ||:!!||||||.!!:!!|||:!!!.! !:!! :!!...:!!|||||| ! ! luIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGl 204082 : AGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGG : 204138 198 : sPheAspSerLeuLeuCysIleLeuAsnLeuHisThrAlaSerGlnPheArgIleLeu : 216 ! !!|||!:!!!!!!! ! ||||||! !||||||! !..!.!!|||!!...!! !||| yValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeu 204139 : TGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTT : 204195 217 : GlnHisArgPheAlaAsn : 222 !:: |||.!!|||||| ArgThrArgLeuAlaAsn 204196 : CGTACACGACTTGCAAAC : 204215 vulgar: AmOr76 158 222 . KQ414617.1 204023 204215 + 103 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204024 204215 103 + . gene_id 1 ; sequence AmOr76 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204024 204215 . + . KQ414617.1 exonerate:protein2genome:local exon 204024 204215 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204024 204215 103 + . alignment_id 1 ; Query AmOr76 ; Align 204024 159 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 157 -> 223 Target range: 204020 -> 204218 158 : GluArgIleLeuProPheLysMetTrpValAspPheProLeuSerGluThrProTyrT : 177 :!!!:!:!!!!!||| ! ::: ::: :::|||||||||||||||! LysLysLeuPheProValProThrTyrTyrIleTyrAspIleSerGluThrProTyrP 204021 : AAAAAGCTTTTTCCGGTGCCaacttattatatttacgatataTCTGAAACTCCATATT : 204078 178 : yrGluIleMetPheValIleGlnLeuLeuThrValGlnGlnIleGlyIleAlaTyrTh : 196 :!||||||||||||:!!:!!|||:!! !|||:!! ! !!!:!.!:!!..!|||! heGluIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIl 204079 : TTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACAT : 204135 197 : rCysAsnAspAsnPheLeuCysValLeuAsnMetHisValValCysGlnPheArgIle : 215 ! !! !|||||||||!!! ! :!!|||! !:!:|||:!! ! !!|||!!...!! ! eGlyValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsn 204136 : TGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAAT : 204192 216 : LeuGlnHisArgLeuThrLysLeu : 223 |||!:: ||||||.!!!!.:!! LeuArgThrArgLeuAlaAsnIle 204193 : CTTCGTACACGACTTGCAAACATA : 204218 vulgar: AmOr86 157 223 . KQ414617.1 204020 204218 + 120 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204021 204218 120 + . gene_id 1 ; sequence AmOr86 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204021 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 204021 204218 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204021 204218 120 + . alignment_id 1 ; Query AmOr86 ; Align 204021 158 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 175 -> 225 Target range: 204068 -> 204218 176 : ThrProTyrPheGluMetValPheIleIleGluIleLeuSerLeuTyrHisValGlyV : 195 |||||||||||||||!!::!!|||:!!:!!:!!!!: !!!!||| :!!!.!: ThrProTyrPheGluIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaL 204069 : ACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCAC : 204126 196 : alCysTyrLeuTyrPheAspAsnPheMetCysIleIleAsnLeuHisIleAlaGlyGl : 214 !!||||||:!! ! !!|||||||||.!. ! |||:!:! !|||||||||..!||||| euCysTyrIleGlyValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGl 204127 : TTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCA : 204183 215 : nPheArgIleLeuGlnHisArgPheSerAsnVal : 225 |!!...!! !|||!:: |||.!!:!!|||:!! nLeuGluAsnLeuArgThrArgLeuAlaAsnIle 204184 : ATTGGAAAATCTTCGTACACGACTTGCAAACATA : 204218 vulgar: AmOr85 175 225 . KQ414617.1 204068 204218 + 121 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204069 204218 121 + . gene_id 1 ; sequence AmOr85 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204069 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 204069 204218 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204069 204218 121 + . alignment_id 1 ; Query AmOr85 ; Align 204069 176 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr82 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 156 -> 229 Target range: 204020 -> 204239 157 : GluArgMetLeuProPheAsnMetTrpIleAsnLeuProLeuSerLysThrProTyrT : 176 :!!!:!:!:!!!||| ! ::: :::|||:!!|||||||||! LysLysLeuPheProValProThrTyrTyrIleTyrAspIleSerGluThrProTyrP 204021 : AAAAAGCTTTTTCCGGTGCCaacttattatatttacgatataTCTGAAACTCCATATT : 204078 177 : yrGluIleMetPheLeuIleGlnAlaMetCysValTyrTyrIleGlyValAlaSerPh : 195 :!|||||||||||||||:!!||| ! !:!! ! !!:!.!:!!..!! !.! heGluIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIl 204079 : TTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACAT : 204135 196 : eCysPheAspAsnIlePheCysIleMetAlaValHisLeuAlaGlyGlnPheArgIle : 214 ! !! !!||||||.!!||| ! |||:!! !:!!|||:!!..!||||||!!...!! ! eGlyValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsn 204136 : TGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAAT : 204192 215 : LeuGlnTyrArgLeuThrLysLeuTyrAspValGluCysIleGlu : 229 |||!:: ||||||.!!!!.:!! ! !!:!!||| !.!!!!: LeuArgThrArgLeuAlaAsnIleLysHisLeuGluThrPheAsp 204193 : CTTCGTACACGACTTGCAAACATAAAACATTTGGAAACTTTTGAT : 204239 vulgar: AmOr82 156 229 . KQ414617.1 204020 204239 + 113 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204021 204239 113 + . gene_id 1 ; sequence AmOr82 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204021 204239 . + . KQ414617.1 exonerate:protein2genome:local exon 204021 204239 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204021 204239 113 + . alignment_id 1 ; Query AmOr82 ; Align 204021 157 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr92PSE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 154 -> 222 Target range: 204023 -> 204227 155 : ArgValLeuProPheAsnMetTrpValAsnLeuProLeuSerMetThrProTyrPheG : 174 !:!:!!!!!||| ! ::: :::||| ||||||||||||| LysLeuPheProValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheG 204024 : AAGCTTTTTCCGGTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTG : 204081 175 : luIleSerPheValLeuZedValLeuSerLeuTyrGlnIleAlaValSerTyrPheCy : 193 |||||! !|||:!!|||::::!! !!!!||| !!!:|||:!!!!!|||.!! ! luIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGl 204082 : AGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGG : 204138 194 : sPheAspAsnPheLeuCysIleMetAsnPheHisValAlaGlyGlnPheLysValLeu : 212 ! !!|||||||||!!! ! |||:!!! !.!!|||:!!..!||||||!!.:!! !||| yValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeu 204139 : TGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTT : 204195 213 : GlnHisArgIleSerThrIleAlaAspLeu : 222 !:: |||:!!:!!!.!||| ! !!||| ArgThrArgLeuAlaAsnIleLysHisLeu 204196 : CGTACACGACTTGCAAACATAAAACATTTG : 204227 vulgar: AmOr92PSE 154 222 . KQ414617.1 204023 204227 + 118 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204024 204227 118 + . gene_id 1 ; sequence AmOr92PSE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204024 204227 . + . KQ414617.1 exonerate:protein2genome:local exon 204024 204227 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204024 204227 118 + . alignment_id 1 ; Query AmOr92PSE ; Align 204024 155 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr68 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 1300 Query range: 0 -> 371 Target range: 3149023 -> 3151146 1 : MetThrIleLeuGlnProIlePheAsnIleLeuThrIleCysGlyCysArgMetPr : 19 |||.!!||||||!:!||| !||||||||||||||||||||||||||| !!! !|| MetAlaIleLeuArgProAlaPheAsnIleLeuThrIleCysGlyCysTrpArgPr 3149024 : ATGGCTATCTTACGGCCAGCTTTCAACATACTGACGATCTGCGGATGCTGGAGGCC : 3149078 20 : oSerSerCysArgThrSerTyrLysArgMetLeuTyrIleLeuTyrAlaThrPheV : 38 |!!!||||||||||||!!! ! !:! !||||||:!!|||.!!! !|||| oCysSerCysArgThrThrArgAlaLysAlaAlaTyrIleValTyrThrMetPheV 3149079 : GTGCTCGTGCCGAACGACACGCGCCAAGGCCGCGTACATCGTTTACACGATGTTCG : 3149135 39 : alLeuLeuLeuLeuTyrSerPheCysIleSerGlnPheLeuAsnValIleIleAsn : 56 ||:!!|||||||||:!!|||||||||||||||||||||...|||||||||:!:||| alValLeuLeuLeuHisSerPheCysIleSerGlnPhePheAsnValIleLeuAsn 3149136 : TGGTACTTTTATTGCACAGCTTCTGCATctcgcaatttttcaacgtgatACTGAAC : 3149189 57 : ValArgThrAlaAspGluLeuCysAsnSerPheTyrMetPheIleAlaSerLeuLe : 75 :!!|||||||||||||||||| !!.!.||||||||||||||||||||||||:!!|| LeuArgThrAlaAspGluLeuSerGluSerPheTyrMetPheIleAlaSerValLe 3149190 : TTGAGAACGGCGGACGAGCTGAGCGAGAGTTTCTACATGTTCATCGCGTCCGTTCT : 3149246 76 : uSerCysCysLysIleValAlaLeuLeuMetAsnHisLysAlaIleLysIlePheA : 94 |||||||||||||||||||.!!||||||! !|||||| !::!|||:!!|||.!!| uSerCysCysLysIleValThrLeuLeuThrAsnHisGlySerIleGluIleLeuA 3149247 : GTCCTGCTGCAAGATCGTCACGCTGCTGACGAACCACGGAAGCATCGAGATCCTCC : 3149303 95 : rgArgLysLeuGluGluGluProCysLysProThrAsnThrLysGluValThrIle : 112 |||||!:!||||||||||||||||||||||||..!!:!.!!:!!|||!.!..!||| rgArgArgLeuGluGluGluProCysLysProValSerAlaGluGluAlaValIle 3149304 : GGAGGAGACTGGAGGAGGAGCCGTGTAAACCTGTGAGCGCCGAGGAGGCTGTCATA : 3149357 113 : GlnLysSerPheAspLysAsnIle{Gl} >>>> Target Intron 1 >>>> : 121 |||!..!.!||||||!:!||||||{||} 649 bp GlnSerLysPheAspArgAsnIle{Gl}++ + 3149358 : CAGAGTAAATTCGACAGAAACATC{GG}gt.........................a : 3150033 122 : {y}SerIleThrIleTyrTyrThrValMetValGluPheThrValPheCysMetI : 139 {|}|||:!:|||||||||||||||:!!:!!||||||.!!||||||.!!||||||| +{y}SerValThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCysMetI 3150034 : g{G}TCGGTGACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTGTATGA : 3150087 140 : leValSerSerLeuValThrAspPheArgAsnGlnArgLeuAlaTyrGluAlaTrp : 157 ||:!!|||||||||:!! !||||||!.!.!.!:!..!|||||||||..!|||||| leLeuSerSerLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgAlaTrp 3150088 : TCCTCTCTTCGTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAGCCTGG : 3150141 158 : LeuProPheAsnCysSerAlaProAsnTyrTyrTyrTyrTyrIleAlaTyrValHi : 176 |||||||||:!!! !||| !|||!.! ||||||||||||||||||||||| LeuProPheAspTyrSerLeuProThr------TyrTyrTyrIleAlaTyrValHi 3150142 : CTGCCCTTCGATTACTCTCTGCCAACT------TACTATTACATCGCGTACGTTCA : 3150192 177 : sGlnIleIleAlaLeuIleGlyThrSerLeuLeuAsnValAlaCysAspValThrI : 195 |||||||:!!|||||||||||||||||||||! !||||||||||||||||||! !| sGlnIleValAlaLeuIleGlyThrSerLeuSerAsnValAlaCysAspValIleI 3150193 : TCAGATCGTCGCGCTGATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCA : 3150249 196 : leCysGlyLeuPheValHisMetTyrSerGlnGlnGluIleLeuLysHisArgLeu : 213 |||||||||||.!!|||||| ! !.!!||||||||||||||||||||||||:!! leCysGlyLeuLeuValHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMet 3150250 : TCTGCGGGTTGCTCGTTCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATG : 3150303 214 : LysGluSerValAsnValGluAsnArgLeuAsnIleGlyLysIleValTyrPheHi : 232 |||||| :!!!.. !|||.!.|||! !|||||||||||||||||| !||||| LysGlu---MetThrGlnGluGlnArgProAsnIleGlyLysIleValArgPheHi 3150304 : AAGGAG---ATGACGCAGGAACAGAGGCCGAATATCGGGAAAATCGTTCGTTTCCA : 3150357 233 : sAsnTyrLeuTyr{Gl} >>>> Target Intron 2 >>>> {y}TyrAlaP : 240 |:!!|||||||||{||} 230 bp {|}|||!.!| sAspTyrLeuTyr{Gl}++ ++{y}TyrValP 3150358 : CGATTATCTTTAC{GG}gt.........................ag{G}TACGTTT : 3150611 241 : heMetValGlnGluLysPheLysLysIleIleGlyIleGlnLeuLeuSerSerThr : 258 ||! !:!!||||||||||||!:! !|||||||||:!:|||||||||||||||||| heThrMetGlnGluLysPheArgTrpIleIleGlyValGlnLeuLeuSerSerThr 3150612 : TCACGATGCAAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACG : 3150665 259 : LeuValValCysPheIleLeuTyrLysLeuAlaAsnThrSerLeuIleSerThrLy : 277 ||||||||||||||||||||||||:!!|||||||||||| !!! !||||||:!!|| LeuValValCysPheIleLeuTyrGluLeuAlaAsnThrProProIleSerSerLy 3150666 : CTGGTAGTGTGTTTCATCCTGTACGAATTGGCGAACACGCCTCCAATCAGCTCCAA : 3150722 278 : sPheLeuGluPheValLeuTyrLeuAlaCysMetMetThrGlnIlePheValTyrC : 296 |!:!|||:!!||||||||||||||||||||||||||||||||||||||| !!|||| sTyrLeuGlnPheValLeuTyrLeuAlaCysMetMetThrGlnIlePhePheTyrC 3150723 : GTACCTGCAATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATCTTCTTTTACT : 3150779 297 : ysTrpTyrGlyAsnGlnLeuLysLeuLys >>>> Target Intron 3 >>>> : 306 |||||||||||.!.||||||||||||||| 61 bp ysTrpTyrGlyGluGlnLeuLysLeuLys++ 3150780 : GCTGGTACGGCGAGCAGTTGAAACTGAAGgt......................... : 3150811 307 : SerValGluValValAspThrIlePheGluLeuAspTrpIleSerLeuAspAsn : 323 |||||||||:!!||| !||||||||||||:!!||||||||| !!|||.!.||| ++SerValGluIleValArgThrIlePheGluMetAspTrpIleProLeuGlnAsn 3150812 : agAGCGTCGAGATTGTGCGCACGATCTTCGAAATGGATTGGATACCTCTCCAGAAC : 3150921 324 : ArgSerLysLysAspLeuIleAsnIleMetArgArgAlaMetAsnProIleGluLe : 342 !!! !||||||||||||||| !:!: !||||||||||||! !||||||||||| GlyIleLysLysAspLeuIleValValAlaArgArgAlaMetIleProIleGluLe 3150922 : GGTATCAAGAAGGATTTGATAGTCGTGGCGAGAAGAGCGATGATCCCGATCGAGTT : 3150978 343 : uThrCysAlaTyrIlePheThrIleAspLeuArgThrPheValThr >>>> Tar : 358 |||||||||||||!!:||||||!!:||||||!.!|||||||||!:! uThrCysAlaTyrMetPheThrMetAspLeuAsnThrPheValSer++ 3150979 : GACCTGCGCGTACATGTTCACCATGGACTTGAACACCTTCGTCAGCgt........ : 3151028 359 : get Intron 4 >>>> IleLeuLysMetSerTyrSerThrTyrAsnPheLeuG : 370 79 bp :!:|||||||||||||||||||||||||||.!.|||: ++LeuLeuLysMetSerTyrSerThrTyrAsnLeuLeuG 3151029 : .................agCTGTTGAAAATGTCCTACTCGACGTACAATCTGCTTG : 3151141 371 : lnArg : 371 !!||| luArg 3151142 : AAAGG : 3151146 vulgar: AmOr68 0 371 . KQ414646.1 3149023 3151146 + 1300 M 120 360 S 0 2 5 0 2 I 0 645 3 0 2 S 1 1 M 45 135 G 2 0 M 47 141 G 1 0 M 20 60 S 0 2 5 0 2 I 0 226 3 0 2 S 1 1 M 68 204 5 0 2 I 0 57 3 0 2 M 52 156 5 0 2 I 0 75 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3149024 3151146 1300 + . gene_id 1 ; sequence AmOr68 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3149024 3149385 . + . KQ414646.1 exonerate:protein2genome:local exon 3149024 3149385 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3149386 3149387 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3149386 3150034 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150033 3150034 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150035 3150373 . + . KQ414646.1 exonerate:protein2genome:local exon 3150035 3150373 . + . insertions 0 ; deletions 3 KQ414646.1 exonerate:protein2genome:local splice5 3150374 3150375 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150374 3150603 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3150602 3150603 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150604 3150808 . + . KQ414646.1 exonerate:protein2genome:local exon 3150604 3150808 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150809 3150810 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150809 3150869 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3150868 3150869 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150870 3151025 . + . KQ414646.1 exonerate:protein2genome:local exon 3150870 3151025 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3151026 3151027 . + . intron_id 4 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3151026 3151104 . + . intron_id 4 KQ414646.1 exonerate:protein2genome:local splice3 3151103 3151104 . + . intron_id 3 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3151105 3151146 . + . KQ414646.1 exonerate:protein2genome:local exon 3151105 3151146 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3149024 3151146 1300 + . alignment_id 1 ; Query AmOr68 ; Align 3149024 1 360 ; Align 3150036 122 135 ; Align 3150171 169 141 ; Align 3150312 217 60 ; Align 3150605 238 204 ; Align 3150870 306 156 ; Align 3151105 358 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr68 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 274 Query range: 123 -> 305 Target range: 3164325 -> 3165184 124 : ThrIleTyrTyrThrValMetValGluPheThrValPheCysMetIleValSerSe : 142 |||||| !||| ! !:!::!! !.!! !!.!|||!! !!: !|||!!!|| ThrIleGlyTyrTrpSerLeuLeuLeuIleCysAlaPheTrpIleTyrValArgSe 3164326 : ACGATTGGCTACTGGAGTTTACTATTAATTTGTGCGTTCTGGATATACGTGAGATC : 3164380 143 : rLeuValThrAspPheArgAsnGlnArgLeuAlaTyrGluAlaTrpLeuProPheA : 161 ||||:!!|||||||||!!!!:!::!!:!||| !!:!..!||||||||||||!:!: rLeuLeuThrAspPheSerSerArgLysLeuMetPheArgAlaTrpLeuProTyrA 3164381 : GCTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGCATGGTTACCCTACG : 3164437 162 : snCysSerAlaProAsnTyrTyrTyrTyrTyrIleAlaTyrValHisGlnIleIle : 179 !!! !||| !! !! ! !!:! !:!!.!!!:!||||||||| !||| spTyrSerProAlaPro------IlePheIleLeuThrPheValHisGlnAlaIle 3164438 : ATTACTCCCCTGCGCCC------ATTTTTATCCTTACCTTCGTCCATCAAGCTATA : 3164485 180 : AlaLeuIleGlyThrSerLeuLeuAsnValAlaCysAspValThrIleCysGlyLe : 198 ||| !! ! !!!! !! !!:!|||.!! ||| ! ! ! !||||| AlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLe 3164486 : GCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTT : 3164542 199 : uPheValHisMetTyrSerGlnGlnGluIleLeuLysHisArgLeuLysGluSerV : 217 |!!.:!!:!!!!:|||!!!||| |||||||||:!!|||||||||!:! !:!| uLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArg---AsnV 3164543 : GTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGG---AACG : 3164596 218 : alAsnValGluAsnArgLeuAsnIleGlyLysIleValTyrPheHisAsnTyrLeu : 235 ||!!...!|||.!. ! !::!:!: !:!! !!.! ! !|||:!! !:!! alLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIle 3164597 : TTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTATA : 3164650 236 : Tyr{Gl} >>>> Target Intron 1 >>>> {y}TyrAlaPheMetValGl : 243 |||{ } 325 bp {!}!:!:!! ! !|||.! Tyr{Gl}++ ++{n}PheSerLysLysValAs 3164651 : TAC{CA}gt.........................ag{A}TTTTCGAAAAAGGTGAA : 3164999 244 : nGluLysPheLysLysIleIleGlyIleGlnLeuLeuSerSerThrLeuValValC : 262 .|||:!!|||||| !|||:!: ! !|||!!!! !! !|||! !! !|||:!!| nGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIleC 3165000 : CGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCT : 3165056 263 : ysPheIleLeuTyrLysLeuAlaAsnThrSerLeuIleSerThrLysPheLeuGlu : 280 |||||! !||||||::!:!!.!!.!.! !!.!:!! ...|||||||||:::||| ysPheAsnLeuTyrArgMetThrGlnIleLysMet---AspThrLysPheValGlu 3165057 : GCTTCAATCTTTACCGAATGACACAGATCAAAATG---GAcacgaaattcgtcgaa : 3165107 281 : PheValLeuTyrLeuAlaCysMetMetThrGlnIlePheValTyrCysTrpTyrGl : 299 ...:!!||||||! ! !|||! !!:|||||||||||| !|||||||||||||| IleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGl 3165108 : atcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGG : 3165164 300 : yAsnGlnLeuLysLeuLys : 305 ||||:!!:!!|||! !||| yAsnGluValLysHisLys 3165165 : CAACGAAGTGAAACATAAG : 3165184 vulgar: AmOr68 123 305 . KQ414646.1 3164325 3165184 + 274 M 43 129 G 2 0 M 46 138 G 1 0 M 21 63 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 36 108 G 1 0 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164326 3165184 274 + . gene_id 2 ; sequence AmOr68 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3164326 3164657 . + . KQ414646.1 exonerate:protein2genome:local exon 3164326 3164657 . + . insertions 0 ; deletions 3 KQ414646.1 exonerate:protein2genome:local splice5 3164658 3164659 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164658 3164982 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3164981 3164982 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164983 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164983 3165184 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3164326 3165184 274 + . alignment_id 2 ; Query AmOr68 ; Align 3164326 124 129 ; Align 3164455 169 138 ; Align 3164593 216 63 ; Align 3164984 238 108 ; Align 3165092 275 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr68 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 267 Query range: 123 -> 305 Target range: 3157797 -> 3158656 124 : ThrIleTyrTyrThrValMetValGluPheThrValPheCysMetIleValSerSe : 142 |||||| !||| ! :::::: ...:::..!|||! !!!: !|||!!!|| ThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrValArgSe 3157798 : ACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATATACGTGAGATC : 3157852 143 : rLeuValThrAspPheArgAsnGlnArgLeuAlaTyrGluAlaTrpLeuProPheA : 161 ||||:!!! !||||||!!!|||::!!:!||| !!:!..!||||||:!!|||!:!: rLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrA 3157853 : GCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACG : 3157909 162 : snCysSerAlaProAsnTyrTyrTyrTyrTyrIleAlaTyrValHisGlnIleIle : 179 !!! !||| !! !! ! !!:! !:!!.!!! !||||||||| !||| spTyrSerProAlaPro------IlePheIleLeuThrSerValHisGlnAlaIle 3157910 : ATTACTCCCCTGCGCCC------ATTTTTATCCTTACCTCCGTCCATCAAGCTATA : 3157957 180 : AlaLeuIleGlyThrSerLeuLeuAsnValAlaCysAspValThrIleCysGlyLe : 198 |||! !! ! !!!! !! !!.!|||.!! |||..! ! ! !||||| AlaSerThrIleCysCysThrSerThrValThrValAspThrLeuTyrThrGlyLe 3157958 : GCCTCGACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTATACACTGGCTT : 3158014 199 : uPheValHisMetTyrSerGlnGlnGluIleLeuLysHisArgLeuLysGluSerV : 217 |!!.:!!:!!!!:|||!!!||| |||||||||:!!|||||||||!:! !:!| uLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArg---AsnV 3158015 : GTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGG---AACG : 3158068 218 : alAsnValGluAsnArgLeuAsnIleGlyLysIleValTyrPheHisAsnTyrLeu : 235 ||!!...!|||.!. ! !::!:!: !:!! !!.! ! !|||:!! !:!! alLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIle 3158069 : TTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTATA : 3158122 236 : Tyr{Gl} >>>> Target Intron 1 >>>> {y}TyrAlaPheMetValGl : 243 |||{ } 325 bp {!}!:!:!! ! !|||.! Tyr{Gl}++ ++{n}PheSerLysLysValAs 3158123 : TAC{CA}gt.........................ag{A}TTTTCGAAAAAGGTGAA : 3158471 244 : nGluLysPheLysLysIleIleGlyIleGlnLeuLeuSerSerThrLeuValValC : 262 .|||:!!|||||| !|||:!: ! !|||!!!! !! !|||! !! !|||:!!| nGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIleC 3158472 : CGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCT : 3158528 263 : ysPheIleLeuTyrLysLeuAlaAsnThrSerLeuIleSerThrLysPheLeuGlu : 280 |||||! !||||||::!:!!.!!.!.! !!.!:!! ...|||||||||:::||| ysPheAsnLeuTyrArgMetThrGlnIleLysMet---AspThrLysPheValGlu 3158529 : GCTTCAATCTTTACCGAATGACACAGATCAAAATG---GAcacgaaattcgtcgaa : 3158579 281 : PheValLeuTyrLeuAlaCysMetMetThrGlnIlePheValTyrCysTrpTyrGl : 299 ...:!!||||||! ! !|||! !!:|||||||||||| !|||||||||||||| IleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGl 3158580 : atcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGTTGGTACGG : 3158636 300 : yAsnGlnLeuLysLeuLys : 305 ||||:!!:!!||| !||| yAsnGluValLysAspLys 3158637 : CAACGAAGTGAAAGATAAG : 3158656 vulgar: AmOr68 123 305 . KQ414646.1 3157797 3158656 + 267 M 43 129 G 2 0 M 46 138 G 1 0 M 21 63 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 36 108 G 1 0 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157798 3158656 267 + . gene_id 3 ; sequence AmOr68 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3157798 3158129 . + . KQ414646.1 exonerate:protein2genome:local exon 3157798 3158129 . + . insertions 0 ; deletions 3 KQ414646.1 exonerate:protein2genome:local splice5 3158130 3158131 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158130 3158454 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3158453 3158454 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158455 3158656 . + . KQ414646.1 exonerate:protein2genome:local exon 3158455 3158656 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3157798 3158656 267 + . alignment_id 3 ; Query AmOr68 ; Align 3157798 124 129 ; Align 3157927 169 138 ; Align 3158065 216 63 ; Align 3158456 238 108 ; Align 3158564 275 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr68 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 233 Query range: 126 -> 362 Target range: 3153129 -> 3153881 127 : TyrThrValMetValGluPheThrValPheCysMetIleValSerSerLeuValTh : 145 |||||| !.!.:!!!!:.!! !||| !! !:!: :!!!!!|||! ! !!|| TyrThrTyrPheLeuAspIleLeuValValValLeuTrpIleThrSerTyrPheTh 3153130 : TACACATATTTCCTGGACATCTTGGTAGTCGTTTTATGGATAACATCGTACTTCAC : 3153184 146 : rAspPheArgAsnGlnArgLeuAlaTyrGluAlaTrpLeuProPheAsnCysSerA : 164 ||||!:!|||...::::::... :::.....!|||||||||!:!:!! !!!!. rAspTyrArgArgArgLysPheLysPheArgValTrpLeuProTyrAspThrThrT 3153185 : GGACTACAGGcgcagaaaattcaaatttcgcgtCTGGTTACCTTACGACACTACTA : 3153241 165 : laProAsnTyrTyrTyrTyrTyrIleAlaTyrValHisGlnIleIleAlaLeuIle : 182 !!! ! ! !!:! !:!: !||| !!!.||||||:!!..! ! hrGlnPro------ValPheThrLeuIleTyrCysGlnGlnIleValCysThrTrp 3153242 : CACAACCT------GTCTTCACTCTGATCTACTGTCAACAGATCGTCTGCACGTGG : 3153289 183 : GlyThrSerLeuLeuAsnValAlaCysAspValThrIleCysGlyLeuPheValHi : 201 !!:! ! !:!!|||||| !|||||| ! !.!! !!||||||.!.:!!!! TyrSerValAsnIleAsnValIleCysAspCysLeuPheSerGlyLeuMetIleGl 3153290 : TACAGCGTGAATATTAACGTCATTTGCGACTGCCTGTTCAGCGGCCTGATGATACA : 3153346 202 : sMetTyrSerGlnGlnGluIleLeuLysHisArgLeuLysGluSerValAsnValG : 220 .!!:! !||| !..!! :!!|||! !! !! !::!.!.!!!||| !||| nIleCysSerIleLeuArgLysMetLysProThrArgArgAsnCysValLeuValT 3153347 : GATTTGCTCAATCTTACGGAAGATGAAACCTACTCGGCGAAACTGTGTGCTCGTCA : 3153403 221 : luAsnArgLeuAsnIleGlyLysIleValTyrPheHisAsnTyrLeuTyrGlyTyr : 238 ! ! ! ! !!! !.!!:!! ! ... ! !!! hrIleIleArgTyrThrSerGlnSerArgGlnGluIleLysArgTyrVal***Leu 3153404 : CCATAATCAGATATACAAGCCAGTCTCGacaagaaattaaacgatacgTTTGATTG : 3153457 239 : AlaPheMetValGlnGluLysPheLysLysIleIleGlyIleGlnLeuLeuSerSe : 257 ||| !!:|||.!.||||||.!! !!!.:!! .!!||||||!!! !! !|| AlaGlnIleValAsnGluLysLeuGlyAsnValSerSerIleGlnPheAlaIleSe 3153458 : GCGCAAATAGTGAACGAGAAGCTTGGAAATGTCTCGAGTATACAGTTCGCGATAAG : 3153514 258 : rThrLeuValValCysPheIleLeuTyrLysLeuAlaAsnThrSerLeuIleSerT : 276 |||| !!.!:!!||||||! !||||||::!:!!:!! ! !..!||| .!! rThrGlyAlaIleCysPheAsnLeuTyrArgMetSerValIleGluLeu---GlyP 3153515 : CACAGGAGCGATATGCTTCAATCTCTATCGAATGTCGGTGATAGAACTC---GGTC : 3153568 277 : hrLysPheLeuGluPheValLeuTyrLeuAlaCysMetMetThrGlnIlePheVal : 294 !!||||||:!!||| :!! ! ! !!.!|||:!::!:.!!||||||||| ! roLysPheValGluAlaLeuThrIleThrValCysLeuLeuAlaGlnIlePheTyr 3153569 : CAAAGTTTGTGGAAGCGTTAACTATCACAGTATGCTTACTCGCGCAGATATTTTAC : 3153622 295 : TyrCysTrpTyrGlyAsnGlnLeuLysLeu{L} >>>> Target Intron 1 : 305 ||||||||||||||||||... ... {:} 53 bp TyrCysTrpTyrGlyAsnAspArgAsnTyr{G}-+ 3153623 : TATTGTTGGTAcggtaacgatagaaattac{g}at..................... : 3153658 306 : >>>> {ys}SerValGluValValAspThrIlePheGluLeuAspTrpIleSerL : 321 {!!}|||:!!|||:!!||||||! !:!! .!. !:!! ! ! !! --{lu}SerLeuGluIleValAspArgValThrAsnSerAsnIleThrValS 3153659 : ....gc{AG}AGTCTCGAAATTGTGGACAGAGTAACGAACAGTAATATAACCGTGT : 3153756 322 : euAspAsnArgSerLysLysAspLeuIleAsnIleMetArgArgAlaMetAsnPro : 339 !|||.!.!!!||||||||| !|||:!! !!:!!:|||||||||:!!.!.||| erAspGluSerSerLysLysIleLeuValLeuMetIleArgArgAlaLeuGluPro 3153757 : CGGACGAAAGCTCCAAGAAGATTCTGGTATTGATGATACGACGAGCTTTGGAGCCT : 3153810 340 : IleGluLeuThrCysAlaTyrIlePheThrIleAspLeuArgThrPheValThrIl : 358 :!!|||!!!||| !! ! !|||.!.:!!:!!:!!|||..!:!!|||..!:!!:! ValGluPheThrGlyLeuArgIleMetSerValAsnLeuGluSerPheThrSerVa 3153811 : GTCGAGTTCACCGGCCTTCGTATCATGTCTGTTAATCTCGAGTCATTCACGTCGGT : 3153867 359 : eLeuLysMetSer : 362 ! !! !!!:||| lSerMetIleSer 3153868 : TAGTATGATATCG : 3153881 vulgar: AmOr68 126 362 . KQ414646.1 3153129 3153881 + 233 M 40 120 G 2 0 M 105 315 G 1 0 M 30 90 S 0 1 5 0 2 I 0 49 3 0 2 S 1 2 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153130 3153881 233 + . gene_id 4 ; sequence AmOr68 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3153130 3153655 . + . KQ414646.1 exonerate:protein2genome:local exon 3153130 3153655 . + . insertions 0 ; deletions 3 KQ414646.1 exonerate:protein2genome:local splice5 3153656 3153657 . + . intron_id 1 ; splice_site "AT" KQ414646.1 exonerate:protein2genome:local intron 3153656 3153708 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3153707 3153708 . + . intron_id 0 ; splice_site "GC" KQ414646.1 exonerate:protein2genome:local cds 3153709 3153881 . + . KQ414646.1 exonerate:protein2genome:local exon 3153709 3153881 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153130 3153881 233 + . alignment_id 4 ; Query AmOr68 ; Align 3153130 127 120 ; Align 3153250 169 315 ; Align 3153565 275 90 ; Align 3153711 306 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr68 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 189 Query range: 121 -> 316 Target range: 3160056 -> 3160960 122 : SerIleThrIleTyrTyrThrValMetValGluPheThrValPheCysMetIleVa : 140 !.!:!!:!!!!: !||||||||| ..!! !.!.!:!!.! ! !!:!: :! LysLeuSerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValTrpMe 3160057 : AAGCTCTCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTATGGAT : 3160111 141 : lSerSerLeuValThrAspPheArgAsnGlnArgLeuAlaTyrGluAlaTrpLeuP : 159 !! !||| !:!!|||! ||||||! !::!..!||| !! !..!!.!||||||| tLeuSerAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrpLeuP 3160112 : GTTGTCGGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGGTTAC : 3160168 160 : roPheAsnCysSerAlaProAsnTyrTyrTyrTyrTyrIleAlaTyrValHisGln : 177 |||||:!!! !!!!||| !..! ! !!:! !:!!.!!|||!.!:!!||| roPheAspTyrArgAla---ThrLeuGlyIlePheSerLeuThrTyrAlaTyrGln 3160169 : CTTTCGATTATAGAGCC---ACATTGGGTATTTTCAGCCTTACCTACGCTTATCAG : 3160219 178 : IleIleAlaLeuIleGlyThrSerLeuLeuAsnValAlaCysAspValThrIleCy : 196 .!!:!!.!!|||||| !! !!!! ! !! !:!!!.! !||| ! !.!! ! PheValThrLeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheSe 3160220 : TTTGTAACTCTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCAG : 3160276 197 : sGlyLeuPheValHisMetTyrSerGlnGlnGluIleLeuLysHisArgLeuLysG : 215 !||||||!!.:!!|||!!:|||!!!||| |||||||||:!!|||||||||||| rGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLys- 3160277 : CGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAG- : 3160333 216 : luSerValAsnValGluAsnArgLeuAsnIleGlyLysIleValTyrPheHisAsn : 233 |||:!!!!. !!!:!....!! !::! !:!! !!.!!:! !||| !! --SerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyr 3160334 : --AGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTAT : 3160384 234 : TyrLeuTyrGlyTyrAlaPheMetValGlnGluLysPheLysLysIle{I} >>> : 250 !:!!||| !!:!...::: :::{!} ArgIleTyrLysPheValTyrTyrPhePhePheLeuArgLeuProLeu{M}++ 3160385 : CGCATATACAAGTTTgtctactattttttttttcttcgtttaccgtta{a}gt... : 3160438 251 : > Target Intron 1 >>>> {le}GlyIleGlnLeuLeuSerSerThrLeuV : 260 328 bp {!:}!.!! |||!!!||| !!!!|||:!!. --{et}AlaThrGlnPheLeuValThrThrMetT 3160439 : ......................ga{TG}GCCACGCAATTTCTGGTGACCACTATGA : 3160793 261 : alValCysPheIleLeuTyrLysLeuAlaAsnThrSerLeuIleSerThrLysPhe : 278 .!:!!||||||! !|||!:!::!|||.!!.!.|||!.!:!! !||| :!! !! hrMetCysPheAsnLeuPheArgLeuThrGlnThrLysValTyrSer---GlnVal 3160794 : CAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGGTGTATTCG---CAAGTT : 3160844 279 : LeuGluPheValLeuTyrLeuAlaCysMetMetThrGlnIlePheValTyrCysTr : 297 |||! !!!.:!!! !!:!:!!!.! !!:!!.!..!!||||||||| !! !||||| LeuAlaLeuIleProPheMetValSerValPheAlaGlnIlePheTyrCysCysTr 3160845 : TTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTG : 3160901 298 : pTyrGlyAsnGlnLeuLysLeuLysSerValGluValValAspThrIlePheGluL : 316 ||||||||||:!! !|||:!!||| ! !!!: !..!||| !:::|||...: pTyrGlyAsnGluThrLysValLysValArgAspGlnThrAspPheLeuPheSerI 3160902 : GTATGGAAACGAGACCAAAGTGAAGGTACGTGATCAAACAGACTTCttattctcaa : 3160958 317 : eu : 316 :: le 3160959 : tt : 3160960 vulgar: AmOr68 121 316 . KQ414646.1 3160056 3160960 + 189 M 43 129 G 1 0 M 49 147 G 1 0 M 34 102 S 0 1 5 0 2 I 0 324 3 0 2 S 1 2 M 25 75 G 1 0 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160057 3160960 189 + . gene_id 5 ; sequence AmOr68 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3160057 3160435 . + . KQ414646.1 exonerate:protein2genome:local exon 3160057 3160435 . + . insertions 0 ; deletions 2 KQ414646.1 exonerate:protein2genome:local splice5 3160436 3160437 . + . intron_id 1 ; splice_site "gt" KQ414646.1 exonerate:protein2genome:local intron 3160436 3160763 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3160762 3160763 . + . intron_id 0 ; splice_site "GA" KQ414646.1 exonerate:protein2genome:local cds 3160764 3160960 . + . KQ414646.1 exonerate:protein2genome:local exon 3160764 3160960 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3160057 3160960 189 + . alignment_id 5 ; Query AmOr68 ; Align 3160057 122 129 ; Align 3160186 166 147 ; Align 3160333 216 102 ; Align 3160766 251 75 ; Align 3160841 277 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr68 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 186 Query range: 237 -> 305 Target range: 3155808 -> 3156012 238 : TyrAlaPheMetValGlnGluLysPheLysLysIleIleGlyIleGlnLeuLeuSe : 256 !:!.!! !|||:!!.!.|||:!!|||:!!! ! ||| !! !|||!!! ! PheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAlaVa 3155809 : TTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGT : 3155863 257 : rSerThrLeuValValCysPheIleLeuTyrLysLeuAlaAsnThrSerLeuIleS : 275 !|||||||||!.!:!!||||||! !|||||| !|||.!!...:!!..!:!!! lSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValThrP 3155864 : GAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGACGC : 3155920 276 : erThrLysPheLeuGluPheValLeuTyrLeuAlaCysMetMetThrGlnIlePhe : 293 !!! !!:!!:!:!!|||.!.:!!:!!||| !::!||||||:!:|||||||||||| roIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIlePhe 3155921 : CGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTC : 3155974 294 : ValTyrCysTrpTyrGlyAsnGlnLeuLysLeuLys : 305 :!!||||||||||||||||||:!!:!!||||||||| IleTyrCysTrpTyrGlyAsnGluValLysLeuLys 3155975 : ATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAG : 3156012 vulgar: AmOr68 237 305 . KQ414646.1 3155808 3156012 + 186 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155809 3156012 186 + . gene_id 6 ; sequence AmOr68 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155809 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155809 3156012 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155809 3156012 186 + . alignment_id 6 ; Query AmOr68 ; Align 3155809 238 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr68 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 232 -> 305 Target range: 3178372 -> 3178591 233 : AsnTyrLeuTyrGlyTyrAlaPheMetValGlnGluLysPheLysLysIleIleGl : 251 |||:::::: !:!.!! ! !|||.!. !|||:!! ! !!:||| AsnPheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePh 3178373 : aatttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTT : 3178427 252 : yIleGlnLeuLeuSerSerThrLeuValValCysPheIleLeuTyrLysLeuAlaA : 270 !:!:|||!!!! !! !|||:!! !|||:!!|||!!.! !:!!||||||:!!:!!! eLeuGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerT 3178428 : CCTGCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGA : 3178484 271 : snThrSerLeuIleSerThrLysPheLeuGluPheValLeuTyrLeuAlaCysMet : 288 ..! !!:!! !.!!|||! !!!.|||:!! !! !!.!! !||||||..!|||||| hrIleAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMet 3178485 : CGATTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATG : 3178538 289 : MetThrGlnIlePheValTyrCysTrpTyrGlyAsnGlnLeuLysLeuLys : 305 :!:||||||:!:!:!:!!|||||||||!:!||||||:!!:!!! !|||||| LeuThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys 3178539 : CTCACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: AmOr68 232 305 . KQ414646.1 3178372 3178591 + 147 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178373 3178591 147 + . gene_id 7 ; sequence AmOr68 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178373 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178373 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178373 3178591 147 + . alignment_id 7 ; Query AmOr68 ; Align 3178373 233 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr68 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 238 -> 305 Target range: 3180466 -> 3180667 239 : AlaPheMetValGlnGluLysPheLysLysIleIleGlyIleGlnLeuLeuSerSe : 257 ||| !!::!!.!.!!:!...!.:!! !! !!: ! !|||!!!!!!.!!|| AlaGluIleMetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePheGlySe 3180467 : GCTGAAATAATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTTCGGAAG : 3180521 258 : rThrLeuValValCysPheIleLeuTyrLysLeuAlaAsnThrSerLeuIleSerT : 276 | !:!!|||:!!|||.!.! !||| !:!!||| !|||.!!..!:!!:!!|||| rPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleLeuSerT 3180522 : CTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTCTCAGCA : 3180578 277 : hrLysPheLeuGluPheValLeuTyrLeuAlaCysMetMetThrGlnIlePheVal : 294 ||:!!||||||! ! :::...||||||::: ::::!! !|||! !|||:!! hrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPheLeu 3180579 : CCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGCTTTCTT : 3180632 295 : TyrCysTrpTyrGlyAsnGlnLeuLysLeuLys : 305 ||||||||||||||||||:!!:!!!:! !||| TyrCysTrpTyrGlyAsnGluValArgThrLys 3180633 : TACTGTTGGTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: AmOr68 238 305 . KQ414646.1 3180466 3180667 + 138 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180467 3180667 138 + . gene_id 8 ; sequence AmOr68 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180467 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180467 3180667 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180467 3180667 138 + . alignment_id 8 ; Query AmOr68 ; Align 3180467 239 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr68 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 235 -> 316 Target range: 3174931 -> 3175171 236 : TyrGlyTyrAlaPheMetValGlnGluLysPheLysLysIleIleGlyIleGlnLe : 254 !:! !!!:!||| !!::!!.!.! !||||||!..! ! !!:!.!! |||!! PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3174932 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3174986 255 : uLeuSerSerThrLeuValValCysPheIleLeuTyrLysLeuAlaAsnThrSerL : 273 !||| !!!!|||:!!..!:!!||||||! !|||!:!::!|||.!!.!.|||!.!: eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3174987 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3175043 274 : euIleSerThrLysPheLeuGluPheValLeuTyrLeuAlaCysMetMetThrGln : 291 !! !||| :!! !!|||! !!!.:!!! !!:!:!!!.! !!:!!.!..!!||| alTyrSer---GlnValLeuAlaLeuIleProPheMetValSerValPheAlaGln 3175044 : TGTATTCG---CAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAG : 3175094 292 : IlePheValTyrCysTrpTyrGlyAsnGlnLeuLysLeuLysSerValGluValVa : 310 |||||| !! !|||||||||||||||:!! !|||:!!||| ! !!!: !.. IlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLysValArgAspGlnTh 3175095 : ATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGGTACGTGATCAAAC : 3175151 311 : lAspThrIlePheGluLeu : 316 !||| !:::|||...::: rAspPheLeuPheSerIle 3175152 : AGACTTCttattctcaatt : 3175171 vulgar: AmOr68 235 316 . KQ414646.1 3174931 3175171 + 127 M 40 120 G 1 0 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174932 3175171 127 + . gene_id 9 ; sequence AmOr68 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174932 3175171 . + . KQ414646.1 exonerate:protein2genome:local exon 3174932 3175171 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3174932 3175171 127 + . alignment_id 9 ; Query AmOr68 ; Align 3174932 236 120 ; Align 3175052 277 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr68 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 134 -> 240 Target range: 3174305 -> 3174618 135 : ValPheCysMetIleValSerSerLeuValThrAspPheArgAsnGlnArgLeuAl : 153 ::::::|||::: !!||||||:!! !!|||! !|||!:!! !::!..!||| ! IleTyrCysIleTrpPheSerSerIlePheThrAlaPheLysIleArgGluLeuPr 3174306 : atttactgtatatggTTCTCGTCGATCTTCACGGCTTTTAAGATCAGAGAGTTACC : 3174360 154 : aTyrGluAlaTrpLeu-ProPheAsnCysSerAlaProAsnTyrTyrTyrTyrTyr : 171 ! !..!!.!||||||#||||||:!!! !!!!||| !..! ! !!:! ! oLeuArgGlyTrpLeu#ProPheAspTyrArgAla---ThrLeuGlyIlePheSer 3174361 : CCTTCGAGGATGGTTAACCTTTCGATTATAGAGCC---ACATTGGGTATTTTCAGC : 3174412 172 : IleAlaTyrValHisGlnIleIleAlaLeuIleGlyThrSerLeuLeuAsnValAl : 190 :!!.!!|||!.!:!!|||.!!:!!.!!|||||| ! !!!!! ! !! !:!!!. LeuThrTyrAlaTyrGlnPheValThrLeuIlePheLeuThrSerAlaIleIleGl 3174413 : CTTACCTACGCTTATCAGTTTGTAACTCTGATATTCCTTACTTCTGCTATTATCGG : 3174469 191 : aCysAspValThrIleCysGlyLeuPheValHisMetTyrSerGlnGlnGluIleL : 209 !! !||| ! !.!! !!||||||!!.:!!|||!!:|||!!!||| ||||||| ySerAspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleL 3174470 : TTCTGACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATAC : 3174526 210 : euLysHisArgLeuLysGluSerValAsnValGluAsnArgLeuAsnIleGlyLys : 227 ||:!!|||||||||||| |||:!!!!. !!!:!....!! !::! !:!! euGlnHisArgLeuLys---SerIleLysProAspArgGluTyrSerAlaLysGln 3174527 : TCCAACATCGTCTGAAG---AGCATTAAACCTGACAGGGAGTACTCTGCGAAACAG : 3174577 228 : IleValTyrPheHisAsnTyrLeuTyrGlyTyrAlaPhe : 240 !!.!!:! !||| !! !:!!||| !!:!...::: CysAlaPheHisHisTyrArgIleTyrLysPheValTyr 3174578 : TGTGCTTTTCATCATTATCGCATATACAAGTTTgtctac : 3174618 vulgar: AmOr68 134 240 . KQ414646.1 3174305 3174618 + 104 M 24 72 F 0 1 M 6 18 G 1 0 M 49 147 G 1 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174306 3174618 104 + . gene_id 10 ; sequence AmOr68 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174306 3174618 . + . KQ414646.1 exonerate:protein2genome:local exon 3174306 3174618 . + . insertions 0 ; deletions 2 ; frameshifts 1 KQ414646.1 exonerate:protein2genome:local similarity 3174306 3174618 104 + . alignment_id 10 ; Query AmOr68 ; Align 3174306 135 72 ; Align 3174379 159 18 ; Align 3174397 166 147 ; Align 3174544 216 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr71 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 1045 Query range: 0 -> 354 Target range: 3157321 -> 3158895 1 : MetArgIleLeuArgTrpThrPheLeuLeuPheAlaLeuCysGlyCysPheProPr : 19 |||!!!:!!|||!:!! |||! ||||||.!! !:!!! !||||||!:!! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 3157322 : ATGAGCGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTATCTGCC : 3157376 20 : oSerSerTrpThrThrArgLeuLysArgTyrLeuTyrLysIleTyrAlaValPheS : 38 | !||||||||||||! !!!!:!!|||! !||||||!!.||||||!.!||||||| oHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheS 3157377 : CCATTCGTGGACAACACCGTTCGAAAGGTCTTTGTACAATATCTACGGGGtgttct : 3157433 39 : erPheValAlaLeuAsnSerPheLeuLeuSerGlnIleLeuAspMetValTyrAsn : 56 |||||::: |||::!|||.!!:!!||||||||||||||||||:!:!.! !||| erPheLeuLeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIleAsn 3157434 : cctttcttcttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCAAC : 3157487 57 : ValLysGlyThrAspAspPheSerAspAsnPheSerValThrValValValPheVa : 75 |||:!!.!! !||||||||||||||||||||||||||||||!.!|||||||||:! ValGluSerGlnAspAspPheSerAspAsnPheSerValThrAlaValValPheLe 3157488 : GTGGAGAGCCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTTCT : 3157544 76 : lThrCysPheLysLeuIleThrIleLeuThrArgArgGluAsnIleLeuLeuLeuC : 94 !|||!! ||||||||| !! !:!!|||! !||||||! !|||.!!:!!!!!||| uThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuI 3157545 : CACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGA : 3157601 95 : ysAsnThrLeuLysGlnGluProLeuSerProIleAsnThrGluGluPheGluIle : 112 !:!!||||||:!!.!.:!!|||!!!||||||:!::!!||||||||| !|||||| leAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIle 3157602 : TCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATT : 3157655 113 : PheLeuLysPheGluLysLeuThr{As} >>>> Target Intron 1 >>>> : 121 !||||||||||||:!!|||{!!} 107 bp ArgAlaLysPheGluLysIleThr{Gl}++ + 3157656 : AGAGCGAAATTCGAGAAGATCACC{GA}gt.........................a : 3157789 122 : {p}TrpAsnThrLeuGlyTyrPheIleLeuLeuMetSerSerSerLeuCysIleL : 139 {:}|||||||||:!!||||||!::! ||||||::: |||::!!!!! !|||! +{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleT 3157790 : g{A}TGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATAT : 3157843 140 : euMetGlySerLeuLeuAlaAsnPheLysIleArgLysLeuAlaPheArgThrTrp : 157 !:!! !!||||||||| !:!!|||!..! !||||||||| !||||||.!!||| yrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrp 3157844 : ACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGG : 3157897 158 : LeuProTyrAspTyrSerThrAlaSerAlaPheLeuLeuAlaPheAlaTyrGlnVa : 176 :!!||||||||||||||| !!||| !! !|||:!!|||.!!! !!.!:!!|||!. IleProTyrAspTyrSerProAlaProIlePheIleLeuThrSerValHisGlnAl 3157898 : ATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTCCGTCCATCAAGC : 3157954 177 : lValValAlaThrValCysThrPheAlaCysValAlaSerAspThrLeuTyrSerG : 195 !:!!!.!:!!|||:!!||| ! !:!! !|||.!! !||||||||||||!!!| aIleAlaSerThrIleCysCysThrSerThrValThrValAspThrLeuTyrThrG 3157955 : TATAGCCTCGACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTATACACTG : 3158011 196 : lyLeuLeuIleHisIleSerCysGlnPheGluIleLeuGluHisArgLeuLysAsn : 213 |||||||||||:!!|||! !||||||||||||||||||||||||||||||!:!||| lyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsn 3158012 : GCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAAC : 3158065 214 : IleGlySerAspLysAsnTyrThrMetLysGlnCysValArgHisHisAsnHisIl : 232 :!! !!!!!!::!!:!! !!:!!:!!|||||||||!.!!:!||||||:!!!.!|| ValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIl 3158066 : GTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTAT : 3158122 233 : eTyr{Ly} >>>> Target Intron 2 >>>> {s}TyrGlyGluMetValA : 240 ||||{:!} 325 bp {!}!:!..!:!!! !|||| eTyr{Gl}++ ++{n}PheSerLysLysValA 3158123 : ATAC{CA}gt.........................ag{A}TTTTCGAAAAAGGTGA : 3158471 241 : snAspAlaPheGlnSerIleMetPhePheGlnPheCysThrSerLeuSerMetIle : 258 ||!!:! !|||:!! !|||:!!.!!! !|||||||||! !|||:!!|||:!!||| snGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIle 3158472 : ACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATC : 3158525 259 : CysPheAsnPheTyrArgIleMetGlnIleGluMetAspSerArgTyrValGlyTh : 277 |||||||||.!!||||||!!:! ||||||:!!||||||:::::::::||| CysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIl 3158526 : TGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaat : 3158582 278 : rIleLeuTyrMetValCysSerLeuMetGlnIlePheTyrTyrCysTrpPheSerA : 296 ||||||||| !!|||!!!:!!! !|||||||||||||||||||||!:!.!!| eIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyA 3158583 : caTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGTTGGTACGGCA : 3158639 297 : snGluValLysLeuLys >>>> Target Intron 3 >>>> SerLeuGluL : 305 ||||||||||| !||| 80 bp ||||||:!!| snGluValLysAspLys++ ++SerLeuGlnL 3158640 : ACGAAGTGAAAGATAAGgt.........................agAGCCTCCAAC : 3158746 306 : euSerAspMetIlePheArgSerAsnTrpThrSerLeuAsnAsnAsnValGlnArg : 323 || !! !!|||||||||!.!|||:!!|||||||||||||||||||||||| ||| euProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArg 3158747 : TTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGA : 3158800 324 : AlaIleLeuLeuValMetArgArgSerMetLysProIleGluPheThrSerIleTy : 342 |||:!!|||:!!:!!|||||||||:!!:!!!:!|||||||||||||||||||||:! AlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheThrSerIleHi 3158801 : GCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCA : 3158857 343 : rIleValSerValAsnLeuAspSerPheMetThrLeu : 354 !:!!|||||||||||||||!!:|||||||||.!!:!! sValValSerValAsnLeuGluSerPheMetAlaVal 3158858 : CGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAGTC : 3158895 vulgar: AmOr71 0 354 . KQ414646.1 3157321 3158895 + 1045 M 120 360 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 112 336 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 67 201 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157322 3158895 1045 + . gene_id 1 ; sequence AmOr71 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3157322 3157683 . + . KQ414646.1 exonerate:protein2genome:local exon 3157322 3157683 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3157684 3157685 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3157684 3157790 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3157789 3157790 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3157791 3158129 . + . KQ414646.1 exonerate:protein2genome:local exon 3157791 3158129 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158130 3158131 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158130 3158454 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3158453 3158454 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158455 3158656 . + . KQ414646.1 exonerate:protein2genome:local exon 3158455 3158656 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158657 3158658 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158657 3158736 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3158735 3158736 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158737 3158895 . + . KQ414646.1 exonerate:protein2genome:local exon 3158737 3158895 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157322 3158895 1045 + . alignment_id 1 ; Query AmOr71 ; Align 3157322 1 360 ; Align 3157792 122 336 ; Align 3158456 235 201 ; Align 3158737 302 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr71 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 972 Query range: 0 -> 354 Target range: 3163849 -> 3165423 1 : MetArgIleLeuArgTrpThrPheLeuLeuPheAlaLeuCysGlyCysPheProPr : 19 |||!!!:!!|||!:!! |||! ||||||.!! !:!!! !||||||!:!! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 3163850 : ATGAGTGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTACCTGCC : 3163904 20 : oSerSerTrpThrThrArgLeuLysArgTyrLeuTyrLysIleTyrAlaValPheS : 38 | !||||||||||||! !!!!:!!|||! !||||||!!.||||||!.!||||||! oHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheT 3163905 : CCATTCGTGGACAACGCCGTTCGAAAGGTCTTTGTACAATATCTACGGGGTGTTCT : 3163961 39 : erPheValAlaLeuAsnSerPheLeuLeuSerGlnIleLeuAspMetValTyrAsn : 56 !!!.:!! !|||!:!|||.!! !||||||||||||||||||:!:!.! !||| yrLeuLeuLeuLeuSerSerLeuAlaLeuSerGlnIleLeuAspValAlaIleAsn 3163962 : ACTTGCTTCTTCTAAGCAGCCTCGCCCTCTCGCAAATATTAGACGTAGCGATCAAC : 3164015 57 : ValLysGlyThrAspAspPheSerAspAsnPheSerValThrValValValPheVa : 75 |||:!!.!! !||||||||||||||||||||||||:::|||!.!|||||||||:! ValGluSerGlnAspAspPheSerAspAsnPheSerIleThrAlaValValPheLe 3164016 : GTGGAGAGCCAGGATGACTTCagtgacaatttttctatcaccGCTGTGGTGTTTCT : 3164072 76 : lThrCysPheLysLeuIleThrIleLeuThrArgArgGluAsnIleLeuLeuLeuC : 94 !|||!! ||||||||| !! !:!!|||! !||||||! !|||.!!:!!!!!||| uThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuI 3164073 : CACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGA : 3164129 95 : ysAsnThrLeuLysGlnGluProLeuSerProIleAsnThrGluGluPheGluIle : 112 !:!!||||||:!!.!.:!!|||!!!||||||:!::!!||||||||| !|||||| leAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIle 3164130 : TCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATT : 3164183 113 : PheLeuLysPheGluLysLeuThr{As} >>>> Target Intron 1 >>>> : 121 !||||||||||||:!!|||{!!} 107 bp ArgAlaLysPheGluLysIleThr{Gl}++ + 3164184 : AGAGCGAAATTCGAGAAGATCACC{GA}gt.........................a : 3164317 122 : {p}TrpAsnThrLeuGlyTyrPheIleLeuLeuMetSerSerSerLeuCysIleL : 139 {:}|||||||||:!!||||||!::! !||||||:!:! !!!!:!!!!!!! |||! +{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleCysAlaPheTrpIleT 3164318 : g{A}TGGAACACGATTGGCTACTGGAGTTTACTATTAATTTGTGCGTTCTGGATAT : 3164371 140 : euMetGlySerLeuLeuAlaAsnPheLysIleArgLysLeuAlaPheArgThrTrp : 157 !:!! !!|||||||||.!!:!!|||!..! !||||||||| !||||||.!!||| yrValArgSerLeuLeuThrAspPheSerSerArgLysLeuMetPheArgAlaTrp 3164372 : ACGTGAGATCGCTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGCATGG : 3164425 158 : LeuProTyrAspTyrSerThrAlaSerAlaPheLeuLeuAlaPheAlaTyrGlnVa : 176 |||||||||||||||||| !!||| !! !|||:!!|||.!!|||!.!:!!|||!. LeuProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAl 3164426 : TTACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGC : 3164482 177 : lValValAlaThrValCysThrPheAlaCysValAlaSerAspThrLeuTyrSerG : 195 !:!!!.!||||||:!!||| ! !:!! !!|||.!! !|||:!!||||||!!!| aIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrG 3164483 : TATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTG : 3164539 196 : lyLeuLeuIleHisIleSerCysGlnPheGluIleLeuGluHisArgLeuLysAsn : 213 |||||||||||:!!|||! !||||||||||||||||||||||||||||||!:!||| lyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsn 3164540 : GCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAAC : 3164593 214 : IleGlySerAspLysAsnTyrThrMetLysGlnCysValArgHisHisAsnHisIl : 232 :!! !!!!!!::!!:!! !!:!!:!!|||||||||!.!!:!||||||:!!!.!|| ValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIl 3164594 : GTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTAT : 3164650 233 : eTyrLysTyrGlyGluMetValAsnAspAlaPheGlnSerIleMetPhePheGln : 251 ||||:!!!! ! ! :!: ! ! |||||| .!! !.!. eTyrGln***ValPheValCysLeuValIlePheGlnIleSerTyrIleArgAsp+ 3164651 : ATACCAGTAAGTTTTCGTTTGCCTTgtgatatttcaaattagtTACATTCGTGATg : 3164707 252 : >>>> Target Intron 2 >>>> PheCysThrSerLeuSerMetIleCysP : 260 325 bp ||||||! !|||:!!|||:!!||||||| - +-PheCysIleSerMetSerValIleCysP 3164708 : c.........................aaTTCTGCATAAGCATGTCGGTGATCTGCT : 3165059 261 : heAsnPheTyrArgIleMetGlnIleGluMetAspSerArgTyrValGlyThrIle : 278 |||||.!!||||||!!:! ||||||:!!||||||:::::::::||| ||| heAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIleIle 3165060 : TCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaatcaTA : 3165113 279 : LeuTyrMetValCysSerLeuMetGlnIlePheTyrTyrCysTrpPheSerAsnGl : 297 |||||| !!|||!!!:!!! !|||||||||||||||||||||!:!.!!||||| LeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGl 3165114 : CTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGGCAACGA : 3165170 298 : uValLysLeuLys >>>> Target Intron 3 >>>> SerLeuGluLeuSe : 306 |||||||! !||| 80 bp ||||||:!!||| ! uValLysHisLys++ ++SerLeuGlnLeuPr 3165171 : AGTGAAACATAAGgt.........................agAGCCTCCAACTTCC : 3165277 307 : rAspMetIlePheArgSerAsnTrpThrSerLeuAsnAsnAsnValGlnArgAlaI : 325 ! !!|||||||||!.!|||:!!|||||||||||||||||||||||| ||||||: oTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArgAlaL 3165278 : ATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGAGCAC : 3165334 326 : leLeuLeuValMetArgArgSerMetLysProIleGluPheThrSerIleTyrIle : 343 !!|||:!!:!!|||||||||:!!:!!!:!|||||||||||||||||||||:!!:!! euLeuIleMetMetArgArgAlaValArgProIleGluPheThrSerIleHisVal 3165335 : TTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCACGTT : 3165388 344 : ValSerValAsnLeuAspSerPheMetThrLeu : 354 |||||||||||||||!!:|||||||||.!!:!! ValSerValAsnLeuGluSerPheMetAlaVal 3165389 : GTCTCTGTGAATCTCGAATCCTTCATGGCAGTC : 3165423 vulgar: AmOr71 0 354 . KQ414646.1 3163849 3165423 + 972 M 120 360 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 129 387 5 0 2 I 0 321 3 0 2 M 51 153 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3163850 3165423 972 + . gene_id 2 ; sequence AmOr71 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3163850 3164211 . + . KQ414646.1 exonerate:protein2genome:local exon 3163850 3164211 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164212 3164213 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164212 3164318 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3164317 3164318 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164319 3164706 . + . KQ414646.1 exonerate:protein2genome:local exon 3164319 3164706 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164707 3164708 . + . intron_id 2 ; splice_site "GC" KQ414646.1 exonerate:protein2genome:local intron 3164707 3165031 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3165030 3165031 . + . intron_id 1 ; splice_site "AA" KQ414646.1 exonerate:protein2genome:local cds 3165032 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3165032 3165184 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165185 3165186 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165185 3165264 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3165263 3165264 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165265 3165423 . + . KQ414646.1 exonerate:protein2genome:local exon 3165265 3165423 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3163850 3165423 972 + . alignment_id 2 ; Query AmOr71 ; Align 3163850 1 360 ; Align 3164320 122 387 ; Align 3165032 251 153 ; Align 3165265 302 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr71 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 350 Query range: 120 -> 370 Target range: 3153111 -> 3154101 121 : AspTrpAsnThrLeuGlyTyrPheIleLeuLeuMetSerSerSerLeuCysIleLe : 139 ..!||||||.!! !!.!||| !!!!||| ! !! ! !:!! !:!!! SerTrpAsnAlaLysAlaTyrThrTyrPheLeuAspIleLeuValValValLeuTr 3153112 : AGTTGGAACGCTAAGGCTTACACATATTTCCTGGACATCTTGGTAGTCGTTTTATG : 3153166 140 : uMetGlySerLeuLeuAlaAsnPheLysIleArgLysLeuAlaPheArgThrTrpL : 158 !!!: !|||! !!!!.!!:!!!:!!:! ||||||... ||||||..!|||| pIleThrSerTyrPheThrAspTyrArgArgArgLysPheLysPheArgValTrpL 3153167 : GATAACATCGTACTTCACGGACTACAGGcgcagaaaattcaaatttcgcgtCTGGT : 3153223 159 : euProTyrAspTyrSerThrAlaSerAlaPheLeuLeuAlaPheAlaTyrGlnVal : 176 ||||||||||| !!!!||| ! !!!.!||| !||| !!:!..! ! |||:!! euProTyrAspThrThrThrGlnProValPheThrLeuIleTyrCysGlnGlnIle 3153224 : TACCTTACGACACTACTACACAACCTGTCTTCACTCTGATCTACTGTCAACAGATC : 3153277 177 : ValValAlaThrValCysThrPheAlaCysValAlaSerAspThrLeuTyrSerGl : 195 ||| !.!! ! ! !!..! ! ! !||| !!!!||| !|||!:!||||| ValCysThrTrpTyrSerValAsnIleAsnValIleCysAspCysLeuPheSerGl 3153278 : GTCTGCACGTGGTACAGCGTGAATATTAACGTCATTTGCGACTGCCTGTTCAGCGG : 3153334 196 : yLeuLeuIleHisIleSerCysGlnPheGluIleLeuGluHisArgLeuLysAsnI : 214 ||||:!!|||!!.|||!!!! !!...!! :!!:!!! !! !! !::!||| yLeuMetIleGlnIleCysSerIleLeuArgLysMetLysProThrArgArgAsnC 3153335 : CCTGATGATACAGATTTGCTCAATCTTACGGAAGATGAAACCTACTCGGCGAAACT : 3153391 215 : leGlySerAspLysAsnTyrThrMetLysGlnCysValArgHisHisAsnHisIle : 232 !! ! !! !! ! !! ! ! !... !|||...... ysValLeuValThrIleIleArgTyrThrSerGlnSerArgGlnGluIleLysArg 3153392 : GTGTGCTCGTCACCATAATCAGATATACAAGCCAGTCTCGacaagaaattaaacga : 3153445 233 : TyrLys<->TyrGlyGluMetValAsnAspAlaPheGlnSerIleMetPhePheGl : 250 ||| ! !.!:!!!!:||||||!!: !.!! !!:!:!! ! !.!.|| TyrVal***LeuAlaGlnIleValAsnGluLysLeuGlyAsnValSerSerIleGl 3153446 : tacgTTTGATTGGCGCAAATAGTGAACGAGAAGCTTGGAAATGTCTCGAGTATACA : 3153502 251 : nPheCysThrSerLeuSerMetIleCysPheAsnPheTyrArgIleMetGlnIleG : 269 ||||...! !||| !.!! !||||||||||||.!!||||||!!: ! !|||| nPheAlaIleSerThrGlyAlaIleCysPheAsnLeuTyrArgMetSerValIleG 3153503 : GTTCGCGATAAGCACAGGAGCGATATGCTTCAATCTCTATCGAATGTCGGTGATAG : 3153559 270 : luMetAspSerArgTyrValGlyThrIleLeuTyrMetValCysSerLeuMetGln : 287 ||:!:! ! !!!:!!:!|||! !.!!:!! ! !! ||||||! !||| !||| luLeuGlyProLysPheValGluAlaLeuThrIleThrValCysLeuLeuAlaGln 3153560 : AACTCGGTCCAAAGTTTGTGGAAGCGTTAACTATCACAGTATGCTTACTCGCGCAG : 3153613 288 : IlePheTyrTyrCysTrpPheSerAsnGluValLysLeu{L} >>>> Target : 301 ||||||||||||||||||!::...|||::: ... {:} 53 IlePheTyrTyrCysTrpTyrGlyAsnAspArgAsnTyr{G}-+ 3153614 : ATATTTTACTATTGTTGGTAcggtaacgatagaaattac{g}at............ : 3153658 302 : Intron 1 >>>> {ys}SerLeuGluLeuSerAspMetIlePheArgSerAsnT : 314 bp {!!}|||||||||:!! !|||! :!! !.!|||||| --{lu}SerLeuGluIleValAspArgValThrAsnSerAsnI 3153659 : .............gc{AG}AGTCTCGAAATTGTGGACAGAGTAACGAACAGTAATA : 3153747 315 : rpThrSerLeuAsnAsnAsnValGlnArgAlaIleLeuLeuValMetArgArgSer : 332 ||| !! !:!!.!.!:! !:!!!:! !:!::!!|||:!!!!:||||||:!! leThrValSerAspGluSerSerLysLysIleLeuValLeuMetIleArgArgAla 3153748 : TAACCGTGTCGGACGAAAGCTCCAAGAAGATTCTGGTATTGATGATACGACGAGCT : 3153801 333 : MetLysProIleGluPheThrSerIleTyrIleValSerValAsnLeuAspSerPh : 351 :!!:!!|||:!!|||||||||.!!:!! !|||:!!||||||||||||!!:||||| LeuGluProValGluPheThrGlyLeuArgIleMetSerValAsnLeuGluSerPh 3153802 : TTGGAGCCTGTCGAGTTCACCGGCCTTCGTATCATGTCTGTTAATCTCGAGTCATT : 3153858 352 : eMetThr >>>> Target Intron 2 >>>> LeuLeuLysSerSerTyrSe : 360 |! !:!! 184 bp ||||||||||||||||||:! eThrSer++ ++LeuLeuLysSerSerTyrAl 3153859 : CACGTCGgt.........................agCTGTTGAAATCCTCCTACGC : 3154069 361 : rAlaPheSerValLeuGlnGlnSerArgGlu : 370 !||||||!:!:!!||||||::: |||||| aAlaPheAsnMetLeuGlnGluArgArgGlu 3154070 : GGCTTTCAATATGCTCCaggaaagaagggaa : 3154101 vulgar: AmOr71 120 370 . KQ414646.1 3153111 3154101 + 350 M 114 342 G 0 3 M 66 198 S 0 1 5 0 2 I 0 49 3 0 2 S 1 2 M 52 156 5 0 2 I 0 180 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153112 3154101 350 + . gene_id 3 ; sequence AmOr71 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3153112 3153655 . + . KQ414646.1 exonerate:protein2genome:local exon 3153112 3153655 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3153656 3153657 . + . intron_id 1 ; splice_site "AT" KQ414646.1 exonerate:protein2genome:local intron 3153656 3153708 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3153707 3153708 . + . intron_id 0 ; splice_site "GC" KQ414646.1 exonerate:protein2genome:local cds 3153709 3153866 . + . KQ414646.1 exonerate:protein2genome:local exon 3153709 3153866 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3153867 3153868 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3153867 3154050 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3154049 3154050 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3154051 3154101 . + . KQ414646.1 exonerate:protein2genome:local exon 3154051 3154101 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153112 3154101 350 + . alignment_id 3 ; Query AmOr71 ; Align 3153112 121 342 ; Align 3153457 235 198 ; Align 3153711 302 156 ; Align 3154051 354 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr71 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 322 Query range: 123 -> 303 Target range: 3150041 -> 3150814 124 : ThrLeuGlyTyrPheIleLeuLeuMetSerSerSerLeuCysIleLeuMetGlySe : 142 |||:!! !||| ||||||:!! !!!! !||||||!!::!!:!:..!|| ThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCysMetIleLeuSerSe 3150042 : ACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTGTATGATCCTCTCTTC : 3150096 143 : rLeuLeuAlaAsnPheLysIleArgLysLeuAlaPheArgThrTrpLeuProTyrA : 161 |||||||!.!:!!|||!!. |||:!!||||||!:!|||.!!|||||||||!:!| rLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgAlaTrpLeuProPheA 3150097 : GTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAGCCTGGCTGCCCTTCG : 3150153 162 : spTyrSerThrAlaSerAlaPheLeuLeuAlaPheAlaTyrGlnValValValAla : 179 |||||||| ! !!!!! !!:!! !:!!|||!:!!.!:!!|||:!!|||!.! ! spTyrSerLeuProThrTyrTyrTyrIleAlaTyrValHisGlnIleValAlaLeu 3150154 : ATTACTCTCTGCCAACTTACTATTACATCGCGTACGTTCATCAGATCGTCGCGCTG : 3150207 180 : ThrValCysThrPheAlaCysValAlaSerAspThrLeuTyrSerGlyLeuLeuIl : 198 ! !! ! :!!.!!:!! !||||||!!!|||..!:!! !!!!|||||||||:! IleGlyThrSerLeuSerAsnValAlaCysAspValIleIleCysGlyLeuLeuVa 3150208 : ATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCATCTGCGGGTTGCTCGT : 3150264 199 : eHisIleSerCysGlnPheGluIleLeuGluHisArgLeuLysAsnIleGlySerA : 217 !||| !!!! !!||| |||||||||:!!||||||:!!|||.!.!!: !..!! lHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMetLysGluMetThrGlnG 3150265 : TCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATGAAGGAGATGACGCAGG : 3150321 218 : spLysAsnTyrThrMetLysGlnCysValArgHisHisAsnHisIleTyr{Ly} : 234 !::!!!.. !.!!!: !:!! !|||||| !|||:!!:!!:!!|||{ } luGlnArgProAsnIleGlyLysIleValArgPheHisAspTyrLeuTyr{Gl}++ 3150322 : AACAGAGGCCGAATATCGGGAAAATCGTTCGTTTCCACGATTATCTTTAC{GG}gt : 3150374 235 : >>>> Target Intron 1 >>>> {s}TyrGlyGluMetValAsnAspAlaPh : 243 230 bp {!}|||! ! ! !:!!.!.!!: !|| ++{y}TyrValPheThrMetGlnGluLysPh 3150375 : .........................ag{G}TACGTTTTCACGATGCAAGAGAAGTT : 3150629 244 : eGlnSerIleMetPhePheGlnPheCysThrSerLeuSerMetIleCysPheAsnP : 262 |::!!!!|||!!: ! ! |||.!!! :!!||| ! !:!::!:||||||! !. eArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuValValCysPheIleL 3150630 : CAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGGTAGTGTGTTTCATCC : 3150686 263 : heTyrArgIleMetGlnIle<->GluMetAspSerArgTyrValGlyThrIleLeu : 279 !.|||..!:!: !.!.! !!!:..!|||!:!|||:!! ! !:!!||| euTyrGluLeuAlaAsnThrProProIleSerSerLysTyrLeuGlnPheValLeu 3150687 : TGTACGAATTGGCGAACACGCCTCCAATCAGCTCCAAGTACCTGCAATTTGTCCTG : 3150740 280 : TyrMetValCysSerLeuMetGlnIlePheTyrTyrCysTrpPheSerAsnGluVa : 298 |||:!!!.!|||! !:!!! !|||||||||!:!|||||||||!:!.!!.!.:!!:! TyrLeuAlaCysMetMetThrGlnIlePhePheTyrCysTrpTyrGlyGluGlnLe 3150741 : TACCTGGCCTGTATGATGACGCAGATCTTCTTTTACTGCTGGTACGGCGAGCAGTT : 3150797 299 : lLysLeuLysSerLeu : 303 !||||||||| !||| uLysLeuLysValLeu 3150798 : GAAACTGAAGGTACTG : 3150814 vulgar: AmOr71 123 303 . KQ414646.1 3150041 3150814 + 322 M 110 330 S 0 2 5 0 2 I 0 226 3 0 2 S 1 1 M 34 102 G 0 3 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150042 3150814 322 + . gene_id 4 ; sequence AmOr71 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3150042 3150373 . + . KQ414646.1 exonerate:protein2genome:local exon 3150042 3150373 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150374 3150375 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150374 3150603 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150602 3150603 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150604 3150814 . + . KQ414646.1 exonerate:protein2genome:local exon 3150604 3150814 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150042 3150814 322 + . alignment_id 4 ; Query AmOr71 ; Align 3150042 124 330 ; Align 3150605 235 102 ; Align 3150710 269 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr71 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 266 Query range: 233 -> 364 Target range: 3155805 -> 3156274 234 : LysTyrGlyGluMetValAsnAspAlaPheGlnSerIleMetPhePheGlnPheCy : 252 !:!!:! !! |||:!!|||!!: !|||:!!! ! !!:||| !||||||.. ArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAl 3155806 : AGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGC : 3155860 253 : sThrSerLeuSerMetIleCysPheAsnPheTyrArgIleMetGlnIleGluMetA : 271 ...!||| ! ! !||||||||||||.!!|||! !:!!! ! !!!::!! aValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValT 3155861 : GGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGA : 3155917 272 : spSer<->ArgTyrValGlyThrIleLeuTyrMetValCysSerLeuMetGlnIle : 288 !! |||||||||! !! !|||:!!|||! !|||! !|||! !|||||| hrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIle 3155918 : CGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATA : 3155971 289 : PheTyrTyrCysTrpPheSerAsnGluValLysLeuLys >>>> Target Int : 302 ||| !|||||||||!:!.!!|||||||||||||||||| 73 bp PheIleTyrCysTrpTyrGlyAsnGluValLysLeuLys++ 3155972 : TTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAGgt............... : 3156015 303 : ron 1 >>>> SerLeuGluLeuSerAspMetIlePheArgSerAsnTrpThrSe : 316 |||||||||:!!|||:!!|||||||||!.! !:!!|||||| ! ++SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrPr 3156016 : ..........agAGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACC : 3156128 317 : rLeuAsnAsnAsnValGlnArgAlaIleLeuLeuValMetArgArgSerMetLysP : 335 !!!!:!!!!. !..!:!!||| !|||||| !:!!|||! !|||:!! !..!| oPheAspLysAlaThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerP 3156129 : GTTCGATAAAGCTACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGC : 3156185 336 : roIleGluPheThrSerIleTyrIleValSerValAsnLeuAspSerPheMetThr : 353 ||||||||.!!! !|||:!! !:!::!!|||||||||||||||||||||:!:.!! roIleGluIleIleSerValArgValLeuSerValAsnLeuAspSerPheValAla 3156186 : CAATTGAAATCATCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCT : 3156239 354 : LeuLeuLysSerSerTyrSerAlaPheSerVal : 364 :!! !! ......|||... :::::: ValSerIleAspLysTyrGlnLysThrAsnIle 3156240 : GTCAGTATtgataaatatcaaaaaactaatatt : 3156274 vulgar: AmOr71 233 364 . KQ414646.1 3155805 3156274 + 266 M 39 117 G 0 3 M 29 87 5 0 2 I 0 69 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155806 3156274 266 + . gene_id 5 ; sequence AmOr71 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3155806 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155806 3156012 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156013 3156014 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156013 3156085 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3156084 3156085 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156086 3156274 . + . KQ414646.1 exonerate:protein2genome:local exon 3156086 3156274 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155806 3156274 266 + . alignment_id 5 ; Query AmOr71 ; Align 3155806 234 117 ; Align 3155926 273 87 ; Align 3156086 302 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr71 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 266 Query range: 123 -> 235 Target range: 3160062 -> 3160401 124 : ThrLeuGlyTyrPheIleLeuLeuMetSerSerSerLeuCysIleLeuMetGlySe : 142 :!!:!!!.!||| :!!! ! !:!: !|||:!! ! !!:!!! !||| !|| SerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValTrpMetLeuSe 3160063 : TCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTATGGATGTTGTC : 3160117 143 : rLeuLeuAlaAsnPheLysIleArgLysLeuAlaPheArgThrTrpLeuProTyrA : 161 | !:!!.!! |||!:!||||||:!!||| !!.!!|||..!|||||||||!:!| rAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrpLeuProPheA 3160118 : GGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGGTTACCTTTCG : 3160174 162 : spTyr<->SerThrAlaSerAlaPheLeuLeuAlaPheAlaTyrGlnValValVal : 178 ||||| :!!||| !.!! !||| !|||.!!!:!||||||||| !!|||..! spTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGlnPheValThr 3160175 : ATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAGTTTGTAACT : 3160228 179 : AlaThrValCysThrPheAlaCysValAlaSerAspThrLeuTyrSerGlyLeuLe : 197 !! ! !! !||| !||| !:!!!.!!!!|||!.!|||!:!||||||||||| LeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheSerGlyLeuLe 3160229 : CTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCAGCGGACTGTT : 3160285 198 : uIleHisIleSerCysGlnPheGluIleLeuGluHisArgLeuLysAsnIleGlyS : 216 ||||||||||! !||||||||||||||||||:!!||||||||||||!:!||| ! uIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysSerIleLysP 3160286 : GATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGAGCATTAAAC : 3160342 217 : erAspLysAsnTyrThrMetLysGlnCysValArgHisHisAsnHisIleTyrLys : 234 !!|||!:!.!.|||:!! !|||||||||!.! !|||||| !!!.!||||||||| roAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrArgIleTyrLys 3160343 : CTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGCATATACAAG : 3160396 235 : Tyr : 235 !:! Phe 3160397 : TTT : 3160401 vulgar: AmOr71 123 235 . KQ414646.1 3160062 3160401 + 266 M 39 117 G 0 3 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160063 3160401 266 + . gene_id 6 ; sequence AmOr71 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160063 3160401 . + . KQ414646.1 exonerate:protein2genome:local exon 3160063 3160401 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160063 3160401 266 + . alignment_id 6 ; Query AmOr71 ; Align 3160063 124 117 ; Align 3160183 163 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr71 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 245 Query range: 136 -> 235 Target range: 3174311 -> 3174612 137 : CysIleLeuMetGlySerLeuLeuAlaAsnPheLysIleArgLysLeuAlaPheAr : 155 |||||| .!...!|||:!!!!!.!! !||||||||||||:!!||| !!.!!|| CysIleTrpPheSerSerIlePheThrAlaPheLysIleArgGluLeuProLeuAr 3174312 : tgtatatggTTCTCGTCGATCTTCACGGCTTTTAAGATCAGAGAGTTACCCCTTCG : 3174366 156 : gThrTrpLeu-ProTyrAspTyr<->SerThrAlaSerAlaPheLeuLeuAlaPhe : 172 | !||||||#|||!:!|||||| :!!||| !.!! !||| !|||.!!!:! gGlyTrpLeu#ProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyr 3174367 : AGGATGGTTAACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTAC : 3174421 173 : AlaTyrGlnValValValAlaThrValCysThrPheAlaCysValAlaSerAspTh : 191 ||||||||| !!|||..! !! ! !! !|||! !||| !:!!!.!||||||!. AlaTyrGlnPheValThrLeuIlePheLeuThrSerAlaIleIleGlySerAspAs 3174422 : GCTTATCAGTTTGTAACTCTGATATTCCTTACTTCTGCTATTATCGGTTCTGACAA : 3174478 192 : rLeuTyrSerGlyLeuLeuIleHisIleSerCysGlnPheGluIleLeuGluHisA : 210 !|||!:!|||||||||||||||||||||! !||||||||||||||||||:!!|||| nLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisA 3174479 : TCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATC : 3174535 211 : rgLeuLysAsnIleGlySerAspLysAsnTyrThrMetLysGlnCysValArgHis : 228 ||||||||!:!||| ! !!|||!:!.!.|||:!! !|||||||||!.! !||| rgLeuLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHis 3174536 : GTCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCAT : 3174589 229 : HisAsnHisIleTyrLysTyr : 235 ||| !!!.!|||||||||!:! HisTyrArgIleTyrLysPhe 3174590 : CATTATCGCATATACAAGTTT : 3174612 vulgar: AmOr71 136 235 . KQ414646.1 3174311 3174612 + 245 M 22 66 F 0 1 M 4 12 G 0 3 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174312 3174612 245 + . gene_id 7 ; sequence AmOr71 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174312 3174612 . + . KQ414646.1 exonerate:protein2genome:local exon 3174312 3174612 . + . insertions 3 ; deletions 0 ; frameshifts 1 KQ414646.1 exonerate:protein2genome:local similarity 3174312 3174612 245 + . alignment_id 7 ; Query AmOr71 ; Align 3174312 137 66 ; Align 3174379 159 12 ; Align 3174394 163 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr71 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 223 Query range: 122 -> 234 Target range: 3180053 -> 3180389 123 : AsnThrLeuGlyTyrPheIleLeuLeuMetSerSerSerLeuCysIleLeuMetGl : 141 |||.!!:!! !!||| !!::!!:!! !! !||| ! !! ! !:!!:!:.. AsnAlaValArgTyrThrMetValValGluMetSerValAlaSerThrIleLeuAs 3180054 : AACGCTGTCAGATACACAATGGTAGTCGAGATGTCGGTCGCCTCGACTATTTTAAA : 3180108 142 : ySerLeuLeuAlaAsnPheLysIleArgLysLeuAlaPheArgThrTrpLeuProT : 160 !||||||:!!.!!||||||:!! ! !!!:!|||.!!!:!||| !|||!!!|||| nSerLeuValThrAsnPheGlnHisGlyArgLeuThrTyrArgGlyTrpPheProT 3180109 : CTCGTTAGTGACCAACTTTCAACACGGCAGACTAACCTACAGAGGCTGGTTCCCTT : 3180165 161 : yrAspTyrSerThrAlaSerAlaPheLeuLeuAlaPheAlaTyrGlnValValVal : 178 ||||||||!!!|||||| ! !|||! !|||.!!!:!||| |||:!!:!! ! yrAspTyrThrThrAlaValLeuPheProLeuThrTyrAlaLeuGlnLeuLeuCys 3180166 : ACGATTACACGACCGCCGTACTTTTTCCATTGACATACGCTCTGCAGCTATTATGC : 3180219 179 : AlaThrValCysThrPheAlaCysValAlaSerAspThrLeuTyrSerGlyLeuLe : 197 !.! !|||! !:!!!:: ! !|||:!! !|||! !|||!:!! !|||||||| ValLeuValTyrSerTrpIleHisValSerValAspIleLeuPhePheGlyLeuLe 3180220 : GTGCTCGTATATTCCTGGATCCACGTTTCAGTGGATATTCTCTTCTTCGGACTGTT : 3180276 198 : uIleHisIleSerCysGlnPheGluIleLeuGluHisArgLeuLysAsnIleGlyS : 216 |!!:!!.:!:!!!|||||||||!!:|||||| |||...!..!:!||| !| uMetGlnLeuCysCysGlnPheAspIleLeuPheSerArgPheSerSerIleThrS 3180277 : GATGCAACTGTGCTGTCAATTCGAcattctcttctctcgtttcAGTAGCATAACGT : 3180333 217 : erAspLysAsnTyrThrMetLysGlnCysValArgHisHisAsnHisIleTyrLys : 234 ||!!:!!.!!. !..!:!:::!::!|||:!!|||||||||:!!...||||||::! erGluAsnLysGlyValLeuArgArgCysIleArgHisHisAspArgIleTyrArg 3180334 : CGGAGAACAAGGGTGTTTTACGAAGATGCATTCGTCATCACGACAGAATTTACCGG : 3180387 vulgar: AmOr71 122 234 . KQ414646.1 3180053 3180389 + 223 M 112 336 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180054 3180389 223 + . gene_id 8 ; sequence AmOr71 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180054 3180389 . + . KQ414646.1 exonerate:protein2genome:local exon 3180054 3180389 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180054 3180389 223 + . alignment_id 8 ; Query AmOr71 ; Align 3180054 123 336 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr71 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 213 Query range: 0 -> 118 Target range: 3159620 -> 3159974 1 : MetArgIleLeuArgTrpThrPheLeuLeuPheAlaLeuCysGlyCysPheProPr : 19 |||!.!! |||!:!! !:!!!!. ! !!!..!!:!!||||||! !.!. !|| MetHisThrLeuGlnLeuSerLeuLysThrLeuThrIleCysGlyTyrIleArgPr 3159621 : ATGCACACGTTGCAATTGTCGTTGAAAACTTTGACGATTTGCGGCTACATAAGGCC : 3159675 20 : oSerSerTrpThrThrArgLeuLysArgTyrLeuTyrLysIleTyrAlaValPheS : 38 |!!!||||||! !:!!! ! ! !!:! !||||||!!.:!!:!!.!!||| ! oThrSerTrpLysSerProGlyLeuLysLeuLeuTyrAsnValHisThrValThrV 3159676 : AACATCGTGGAAGTCACCGGGGCTAAAGCTTCTCTATAACGTACACACGGTTACTG : 3159732 39 : erPheValAlaLeuAsnSerPheLeuLeuSerGlnIleLeuAspMetValTyrAsn : 56 ! ! |||!.!|||!:!!!!|||!!!:!!:!!||||||||||||:::::::::||| alValValValLeuSerThrPhePheValAlaGlnIleLeuAspIleIlePheAsn 3159733 : TAGTGGTAGTTCTTAGCACGTTTTTCGTCGCCCAGATATTggacattattttcaac : 3159786 57 : ValLysGlyThrAspAspPheSerAspAsnPheSerValThrValValValPheVa : 75 |||:!!..! !|||!!:|||||||||||||||!!!:!!||| ! !|||.!. ValGluAsnGlnAspGluPheSerAspAsnPheCysIleThrCysCysValMetAs 3159787 : gtgGAGAATCAAGACGAGTTTAGCGACAATTTCTGCATAACGTGCTGCGTGATGAA : 3159843 76 : lThrCysPheLysLeuIleThrIleLeuThrArgArgGluAsnIleLeuLeuLeuC : 94 !!:! ! |||||| !!:!:!:|||! ! !!||||||! |||! ! !||| nSerLeuGlyLysLeuTyrSerLeuLeuIleGlyArgGluMetIleGlnAsnLeuI 3159844 : CAGCCTTGGAAAGTTGTACAGCTTGCTGATAGGACGAGAAATGATCCAAAATTTAA : 3159900 95 : ysAsnThrLeuLysGlnGluProLeuSerProIleAsnThrGluGluPheGluIle : 112 :!!:!!|||:!!...!!:||||||!!!|||:!::!! !! !||| !|||||| leAspSerLeuGlnSerAspProLeuArgProLeuAspGluValGluAsnGluIle 3159901 : TAGACTCGCTACAAAGTGACCCTCTTAGGCCGTTGGACGAAGTGGAGAATGAAATT : 3159954 113 : PheLeuLysPheGluLys : 118 |||!:! !|||||| ArgLeuArgHisGluLys 3159955 : CGATTGAGACACGAGAAG : 3159974 vulgar: AmOr71 0 118 . KQ414646.1 3159620 3159974 + 213 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3159621 3159974 213 + . gene_id 9 ; sequence AmOr71 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3159621 3159974 . + . KQ414646.1 exonerate:protein2genome:local exon 3159621 3159974 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3159621 3159974 213 + . alignment_id 9 ; Query AmOr71 ; Align 3159621 1 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr71 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 179 Query range: 0 -> 112 Target range: 3154921 -> 3155257 1 : MetArgIleLeuArgTrpThrPheLeuLeuPheAlaLeuCysGlyCysPheProPr : 19 |||!.!:!!|||!:! !.!.! !!!!! !|||:!!|||||| !!::||||| MetHisLeuLeuGlnLysGlnLeuGlnPheCysAlaMetCysGlyLeuTrpProPr 3154922 : ATGCATCTACTGCAAAAACAACTGCAATTTTGCGCAATGTGCGGTCTCTGGCCACC : 3154976 20 : oSerSerTrpThrThrArgLeuLysArgTyrLeuTyrLysIleTyrAlaValPheS : 38 | !!|||! .!! !!! !!!!||||||!:! !|||...:!!!:!:!! !!:!! oProSerSerAlaProLeuPheLysArgPheAlaTyrSerValPheSerTrpTyrT 3154977 : GCCATCATCAGCTCCGCTGTTTAAAAGATTCGCCTACTCTGTATTCTCGTGGTACA : 3155033 39 : erPheValAlaLeuAsnSerPheLeuLeuSerGlnIleLeuAspMetValTyrAsn : 56 !!!!.:!! !:!! !!! ! :!!!!!|||||||||:!!|||:!::!! ||| hrLeuIleLeuValTyrIleThrValPheSerGlnIleMetAspLeuIleValAsn 3155034 : CGTTAATACTGGTGTACATCACGGTTTTCAGCCAAATCATGGACCTAATCGTGAAC : 3155087 57 : ValLysGlyThrAspAspPheSerAspAsnPheSerValThrValValValPheVa : 75 |||! ! ! !|||!!:|||||||||||||||! !:!! !:!!!.! ! :! ValThrThrGlnAspGluPheSerAspAsnPheTyrIleLeuLeuAlaCysAlaIl 3155088 : GTGACGACTCAAGACGAGTTTAGCGACAATTTTTACATACTTCTGGCGTGTGCGAT : 3155144 76 : lThrCysPheLysLeuIleThrIleLeuThrArgArgGluAsnIleLeuLeuLeuC : 94 !:!!! ||| ! !:!:!:|||!.!!!!|||:!!|||:!!! !! !:!! eSerLeuGlnLysAlaGlnSerValLeuAsnSerArgLysAsnValHisArgMetI 3155145 : ATCCTTGCAGAAAGCACAGAGTGTGTTAAACAGTCGTAAGAATGTCCACCGTATGA : 3155201 95 : ysAsnThrLeuLysGlnGluProLeuSerProIleAsnThrGluGluPheGluIle : 112 !:!! !|||!!....||||||!!! !||| ! !! !||||||.!!|||||| leAspLeuLeuAsnSerGluProPheHisProGluCysLysGluGluIleGluIle 3155202 : TCGATCTTTTGAACAGCGAACCTTTTCATCCAGAATGTAAGGAGGAAATCGAGATA : 3155255 vulgar: AmOr71 0 112 . KQ414646.1 3154921 3155257 + 179 M 112 336 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3154922 3155257 179 + . gene_id 10 ; sequence AmOr71 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3154922 3155257 . + . KQ414646.1 exonerate:protein2genome:local exon 3154922 3155257 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3154922 3155257 179 + . alignment_id 10 ; Query AmOr71 ; Align 3154922 1 336 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr71 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 301 -> 362 Target range: 3161001 -> 3161184 302 : SerLeuGluLeuSerAspMetIlePheArgSerAsnTrpThrSerLeuAsnAsnAs : 320 |||||||||:!!!!!|||! :!!|||..!||||||||||||:!!|||!:!.!.!: SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSe 3161002 : AGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAG : 3161056 321 : nValGlnArgAlaIleLeuLeuValMetArgArgSerMetLysProIleGluPheT : 339 !..!:!!!:!.!!:!!||| !:!!||| !||||||:!!|||||||||||||||| rThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheT 3161057 : CACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCA : 3161113 340 : hrSerIleTyrIleValSerValAsnLeuAspSerPheMetThrLeuLeuLysSer : 357 ||.!! !!:!:!! !! !!|||||||||!!:||||||! !:!:!!! ! ... hrGlyAlaPheValPheProValAsnLeuGluSerPheLysSerValCysIleLys 3161114 : CCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAAAGTGTTTGTatcaaa : 3161167 358 : SerTyrSerAlaPhe : 362 ||| ||| IleTyrIlePhePhe 3161168 : atatatatatttttc : 3161184 vulgar: AmOr71 301 362 . KQ414646.1 3161001 3161184 + 151 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3161002 3161184 151 + . gene_id 11 ; sequence AmOr71 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3161002 3161184 . + . KQ414646.1 exonerate:protein2genome:local exon 3161002 3161184 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3161002 3161184 151 + . alignment_id 11 ; Query AmOr71 ; Align 3161002 302 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr71 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 301 -> 362 Target range: 3175212 -> 3175395 302 : SerLeuGluLeuSerAspMetIlePheArgSerAsnTrpThrSerLeuAsnAsnAs : 320 |||||||||:!!!!!|||! :!!|||..!||||||||||||:!!|||!:!.!.!: SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSe 3175213 : AGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAG : 3175267 321 : nValGlnArgAlaIleLeuLeuValMetArgArgSerMetLysProIleGluPheT : 339 !..!:!!!:!.!!:!!||| !:!!||| !||||||:!!|||||||||||||||| rThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheT 3175268 : CACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCA : 3175324 340 : hrSerIleTyrIleValSerValAsnLeuAspSerPheMetThrLeuLeuLysSer : 357 ||.!! !!:!:!! !! !!|||||||||!!:||||||! !:!:!!! ! ... hrGlyAlaPheValPheProValAsnLeuGluSerPheLysSerValCysIleLys 3175325 : CCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAAAGTGTTTGTatcaaa : 3175378 358 : SerTyrSerAlaPhe : 362 ||| ||| IleTyrIlePhePhe 3175379 : atatatatatttttc : 3175395 vulgar: AmOr71 301 362 . KQ414646.1 3175212 3175395 + 151 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3175213 3175395 151 + . gene_id 12 ; sequence AmOr71 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3175213 3175395 . + . KQ414646.1 exonerate:protein2genome:local exon 3175213 3175395 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3175213 3175395 151 + . alignment_id 12 ; Query AmOr71 ; Align 3175213 302 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr71 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 229 -> 301 Target range: 3178372 -> 3178591 230 : AsnHisIleTyrLysTyrGlyGluMetValAsnAspAlaPheGlnSerIleMetPh : 248 ||| ||| :::!:! !:!!! !|||||| !!.!||||||! !!!:!!:|| AsnPheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePh 3178373 : aatttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTT : 3178427 249 : ePheGlnPheCysThrSerLeuSerMetIleCysPheAsnPheTyrArgIleMetG : 267 |.!.||||||! !! !|||! !!!!:!!:!:|||!!.!:!.!!|||!:!!!: ! eLeuGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerT 3178428 : CCTGCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGA : 3178484 268 : lnIleGlu<->MetAspSerArgTyrValGlyThrIleLeuTyrMetValCysSer : 284 !|||.!. .!...!! !!.!!:!||| !! ! !! !|||:!: !|||! ! hrIleAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMet 3178485 : CGATTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATG : 3178538 285 : LeuMetGlnIlePheTyrTyrCysTrpPheSerAsnGluValLysLeuLys : 301 |||! !|||:!:!:!! ||||||||||||.!!|||||||||! !|||||| LeuThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys 3178539 : CTCACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: AmOr71 229 301 . KQ414646.1 3178372 3178591 + 141 M 40 120 G 0 3 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178373 3178591 141 + . gene_id 13 ; sequence AmOr71 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178373 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178373 3178591 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178373 3178591 141 + . alignment_id 13 ; Query AmOr71 ; Align 3178373 230 120 ; Align 3178496 270 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr73 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 1374 Query range: 0 -> 365 Target range: 3177231 -> 3179029 1 : MetHisLysLeuSerLeuSerPheAlaLeuLeuThrTyrGlyGlyTyrTrpArgPr : 19 ||||||!:!||| !!||| !!|||||||||||||||! ! !!|||||||||!:!|| MetHisArgLeuProLeuProPheAlaLeuLeuThrCysCysGlyTyrTrpLysPr 3177232 : ATGCATAGGCTTCCTTTGCCTTTCGCTCTGCTTACTTGCTGCGGCTACTGGAAACC : 3177286 20 : oThrLysTrpProAlaSerSerTyrLysTyrHisLeuTyrAsnIleTyrSerAlaP : 38 |||||||||||||||||||||| |||||| ||||||:!!:!!||||||!.!| oThrLysTrpProAlaSerSerLeuLysTyrTrpLeuTyrAspValTyrSerValP 3177287 : GACAAAATGGCCAGCTAGTTCGCTGAAATACTGGCTGTACGACGTTTACTCGGTGT : 3177343 39 : heMetIlePheLeuLeuTyrPheIleThrPheCysThrCysValAspSerLeuIle : 56 |||||:!!|||||||||||||||...|||||||||.!!|||:!!|||||||||||| heMetValPheLeuLeuTyrPhePheThrPheCysAlaCysIleAspSerLeuIle 3177344 : TTATGGTCTTTTTGCTctattttttcacgttttgCGCATGCATAGACTCGTTGATC : 3177397 57 : SerLysAsnLeuLysThrMetSerGluLysPheSerLeuCysIleSerValPheGl : 75 ||||||:!!||||||||||||!!!!!:||||||||||||! !|||||||||||||| SerLysAspLeuLysThrMetThrAspLysPheSerLeuPheIleSerValPheGl 3177398 : AGCAAAGATCTCAAGACGATGACAGATAAGTTTTCTCTGTTCATCTCTGTGTTCGG : 3177454 76 : yValSerLeuLysValAlaAsnLeuPheLeuGlnArgGlyLysIleIleAsnIleM : 94 ||||||||||||||||||||||||||||||||||||||||!:!|||||||||:!:| yValSerLeuLysValAlaAsnLeuPheLeuGlnArgGlyArgIleIleAsnValM 3177455 : TGTCTCTCTGAAAGTAGCCAATTTATTCCTTCAACGGGGGAGGATTATAAACGTGA : 3177511 95 : etAsnSerLeuThrLysGluAsnSerIleProArgAspGluGlnGluGluIleIle : 112 |||||! !||| !! !||||||!!!|||||||||||||||||||||:!!|||||| etAsnIleLeuLeuThrGluAsnCysIleProArgAspGluGlnGluLysIleIle 3177512 : TGAACATTTTGCTGACGGAGAATTGCATCCCGAGGGACGAGCAAGAAAAGATAATA : 3177565 113 : GlnArgArgAsnAspAsnTyrAla{Ar} >>>> Target Intron 1 >>>> : 121 ||||||!:!|||||||||||||||{||} 316 bp GlnArgLysAsnAspAsnTyrAla{Ar}++ + 3177566 : CAACGGAAGAACGATAATTACGCG{AG}gt.........................a : 3177908 122 : {g}LysValThrIleTyrCysGluIleLeuAsnGluSerAlaValPhePheAlaT : 139 {|}|||:!!|||||||||||||||||||||||||||||||||!.!|||!!.|||| +{g}LysLeuThrIleTyrCysGluIleLeuAsnGluSerAlaAlaPheLeuAlaT 3177909 : g{A}AAACTGACAATCTACTGCGAGATCCTGAACGAATCCGCCGCATTCTTAGCTA : 3177962 140 : hrValGlyGlnTyrLysArgPheIleAsnThrArgThrLeuProValSerAspTrp : 157 |||||!.!||||||!!...!||||||..!:!!!:!|||||||||:!!||||||||| hrValAlaGlnTyrAsnGluPheIleArgSerLysThrLeuProIleSerAspTrp 3177963 : CGGTAGCACAGTACAACGAATTCATACGCTCCAAGACTTTGCCAATATCCGACTGG : 3178016 158 : IleProTyrAspLeuSerSerThrGluLeuTyrIleIleSerLeuLeuTyrGlnTh : 176 :!:|||||||||||||||||| !:!!||||||! ||||||||||||:!!||||| ValProTyrAspLeuSerSerGlnLysLeuTyrThrIleSerLeuLeuHisGlnTh 3178017 : GTGCCTTACGATTTGTCCTCGCAAAAATTGTACACGATATCTCTGTTGCATCAAAC : 3178073 177 : rValGlyLeuLeuIleCysAlaAsnAlaSerValGlyAsnGluThrLeuIleAlaG : 195 |:!!||||||:!!:!!|||||||||.!!||||||!.!||||||||||||||||||| rIleGlyLeuMetValCysAlaAsnThrSerValAlaAsnGluThrLeuIleAlaG 3178074 : GATAGGCCTGATGGTCTGTGCGAACACCAGCGTGGCAAACGAAACACTTATCGCAG : 3178130 196 : lyLeuMetIleGlnAlaGlyValGlnPheGluIlePheCysHisArgAlaGlnAsn : 213 ||||||||||||||||||||!.!|||||||||||||||||||||||||||::!||| lyLeuMetIleGlnAlaGlyAlaGlnPheGluIlePheCysHisArgAlaArgAsn 3178131 : GGCTGATGATACAAGCTGGCGCGCAATTCGAGATATTTTGCCATCGAGCGAGAAAT : 3178184 214 : LeuProSerLeuValLeuThrValThrArgAsnSerAsn{Va} >>>> Target : 227 ||| !!:!!|||:!!||| !..!! !|||||||||.!.{ } 1 LeuThrAlaLeuLeuLeuAspThrArgArgAsnSerGlu{Se}-- 3178185 : CTAACCGCCCTACTCTTGGATACCAGAAGAAACAGCGAG{TC}ta........... : 3178230 228 : Intron 2 >>>> {l}PheAlaGluThrValAsnThrValPheGlnTyrMetI : 240 59 bp {!}|||.!!:!!|||||||||||||||||||||||||||| ++{r}PheThrGlnThrValAsnThrValPheGlnTyrMetI 3178231 : ..............ag{a}TTTACACAGACGGTGAACACTGTGTTCCAGTACATGA : 3178424 241 : lePheLeuGlnPheThrIleSerSerValValLeuCysLeuSerIleTyrLysPhe : 258 ||||||||||||||:!!|||||||||..!||||||||||||||||||||||||.!. lePheLeuGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMet 3178425 : TTTTCCTGCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATG : 3178478 259 : SerThrValAspProLeuSerMetAsnPheValTrpSerGlyPheTyrLeuCysCy : 277 ||||||:!!:!!|||!!!||||||||||||||||||!!!!.!! !||||||||||| SerThrIleAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCy 3178479 : TCGACGATTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTG : 3178535 278 : sMetLeuMetGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys : 296 |||||||! !||||||||||||||||||||||||||||||||||||||||||||| sMetLeuThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys+ 3178536 : TATGCTCACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAGg : 3178592 297 : >>>> Target Intron 3 >>>> SerAsnLysValSerAspAlaIleTyrG : 305 155 bp |||.!.||||||.!!!!:|||||||||| + ++SerGluLysValGlyGluAlaIleTyrG 3178593 : t.........................agAGCGAAAAAGTAGGCGAAGCTATTTACG : 3178774 306 : luMetAspTrpThrIleLeuProSerAsnValMetLysAspLeuLeuLeuValIle : 323 |||||||||||||| !||||||!!!:!!:!!! !|||||||||||||||:!!!!: luMetAspTrpThrAlaLeuProThrAspIleArgLysAspLeuLeuLeuIleMet 3178775 : AGATGGACTGGACGGCACTTCCCACCGATATAAGGAAAGATCTATTGCTGATCATG : 3178828 324 : AlaArgSerLysLysProValLysIleThrSerGlyGlnIlePheIleLeuSerTh : 342 ||||||||||||::!|||||||||!!:|||||||||!!.:!! !!:!!||||||.! AlaArgSerLysArgProValLysMetThrSerGlyHisValValValLeuSerAl 3178829 : GCGAGATCAAAACGACCTGTTAAAATGACAAGCGGCCACGTCGTCGTTTTATCCGC : 3178885 343 : rGluSerPheMetLys >>>> Target Intron 4 >>>> IleMetLysIl : 351 !||||||||||||... 73 bp ||||||||||| aGluSerPheMetSer++ ++IleMetLysIl 3178886 : AGAATCATTTATGTCTgt.........................agaTCATGAAGAT : 3178985 352 : eSerTyrSerSerPheAsnIleLeuLysAsnSerThrMetLys : 365 |!!!|||||||||!:!|||:!!|||! !|||||||||! ||| eThrTyrSerSerTyrAsnLeuLeuThrAsnSerThrAsnLys 3178986 : AACGTATTCGTCGTACAACCTCTTGACAAATTCTACAAACAAA : 3179029 vulgar: AmOr73 0 365 . KQ414646.1 3177231 3179029 + 1374 M 120 360 S 0 2 5 0 2 I 0 312 3 0 2 S 1 1 M 105 315 S 0 2 5 0 2 I 0 155 3 0 2 S 1 1 M 68 204 5 0 2 I 0 151 3 0 2 M 52 156 5 0 2 I 0 69 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3177232 3179029 1374 + . gene_id 1 ; sequence AmOr73 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3177232 3177593 . + . KQ414646.1 exonerate:protein2genome:local exon 3177232 3177593 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3177594 3177595 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3177594 3177909 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3177908 3177909 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3177910 3178227 . + . KQ414646.1 exonerate:protein2genome:local exon 3177910 3178227 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178228 3178229 . + . intron_id 2 ; splice_site "TA" KQ414646.1 exonerate:protein2genome:local intron 3178228 3178386 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3178385 3178386 . + . intron_id 1 ; splice_site "ag" KQ414646.1 exonerate:protein2genome:local cds 3178387 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178387 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178592 3178593 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3178592 3178746 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3178745 3178746 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3178747 3178902 . + . KQ414646.1 exonerate:protein2genome:local exon 3178747 3178902 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178903 3178904 . + . intron_id 4 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3178903 3178975 . + . intron_id 4 KQ414646.1 exonerate:protein2genome:local splice3 3178974 3178975 . + . intron_id 3 ; splice_site "ag" KQ414646.1 exonerate:protein2genome:local cds 3178976 3179029 . + . KQ414646.1 exonerate:protein2genome:local exon 3178976 3179029 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3177232 3179029 1374 + . alignment_id 1 ; Query AmOr73 ; Align 3177232 1 360 ; Align 3177911 122 315 ; Align 3178388 228 204 ; Align 3178747 296 156 ; Align 3178976 348 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr73 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 227 -> 295 Target range: 3155808 -> 3156012 228 : PheAlaGluThrValAsnThrValPheGlnTyrMetIlePheLeuGlnPheThrIl : 246 |||.!!! ! !:!!||| ! !|||:!! !|||||| !||||||.!!:! PheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAlaVa 3155809 : TTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGT : 3155863 247 : eSerSerValValLeuCysLeuSerIleTyrLysPheSerThrValAspProLeuS : 265 :|||!!!:!!!.!:!!|||!!!!:!:!!||| !!!.!!! ! !||| ! ! lSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValThrP 3155864 : GAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGACGC : 3155920 266 : erMetAsnPheValTrpSerGlyPheTyrLeuCysCysMetLeuMetGlnValTyr : 283 !!!!:!..!:!||| ! ! !.!.||| ! !!|||||||||! !|||:!!!:! roIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIlePhe 3155921 : CGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTC : 3155974 284 : LeuTyrCysTrpPheGlyAsnGluValThrLeuLys : 295 :!!|||||||||!:!||||||||||||! !|||||| IleTyrCysTrpTyrGlyAsnGluValLysLeuLys 3155975 : ATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAG : 3156012 vulgar: AmOr73 227 295 . KQ414646.1 3155808 3156012 + 155 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155809 3156012 155 + . gene_id 2 ; sequence AmOr73 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155809 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155809 3156012 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155809 3156012 155 + . alignment_id 2 ; Query AmOr73 ; Align 3155809 228 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr73 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 227 -> 295 Target range: 3180463 -> 3180667 228 : PheAlaGluThrValAsnThrValPheGlnTyrMetIlePheLeuGlnPheThrIl : 246 !!.||||||! !:!!||| ! !.!.||| ! !!!:||| !|||||| ! LeuAlaGluIleMetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePheGl 3180464 : TTAGCTGAAATAATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTTCGG : 3180518 247 : eSerSerValValLeuCysLeuSerIleTyrLysPheSerThrValAspProLeuS : 265 !|||! !:!!|||:!!|||||||||:!: !:!!!!.! !!.!!.!||| !|||| ySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleLeuS 3180519 : AAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTCTCA : 3180575 266 : erMetAsnPheValTrpSerGlyPheTyrLeuCysCysMetLeuMetGlnValTyr : 283 ||! .!.|||:!! !!!! ||||||||| :::|||:!!||| !!:! erThrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPhe 3180576 : GCACCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGCTTT : 3180629 284 : LeuTyrCysTrpPheGlyAsnGluValThrLeuLys : 295 ||||||||||||!:!||||||||||||! ! !||| LeuTyrCysTrpTyrGlyAsnGluValArgThrLys 3180630 : CTTTACTGTTGGTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: AmOr73 227 295 . KQ414646.1 3180463 3180667 + 149 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180464 3180667 149 + . gene_id 3 ; sequence AmOr73 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180464 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180464 3180667 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180464 3180667 149 + . alignment_id 3 ; Query AmOr73 ; Align 3180464 228 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr73 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 2 -> 123 Target range: 3179619 -> 3179979 3 : LysLeuSerLeuSerPheAlaLeuLeuThrTyrGlyGlyTyrTrpArgProThrLy : 21 |||::!|||::: |||......|||::! !||||||! !|||||||||! !.. LysValSerValLeuPheThrPheLeuSerIleGlyGlyCysTrpArgProIleSe 3179620 : aaagtATCGGtactttttacatttctcaGTATCGGTGGCTGTTGGAGACCGATCTC : 3179674 22 : sTrpProAlaSerSerTyrLysTyrHisLeuTyrAsnIleTyrSerAlaPheMetI : 40 !||| :!!|||!!!|||||| :!!||||||:!!|||!!!!.!.!!:!:: rTrp---SerSerThrTyrLysThrAlaIleTyrAsnValTyrThrValLeuValL 3179675 : GTGG---TCTTCGACGTACAAAACGGCAATCTACAATGTCTACACCGTTCTCGTAT : 3179728 41 : lePheLeuLeuTyrPheIleThrPheCysThrCysValAspSerLeuIleSerLys : 58 !!.!!:!! ! ! !.!!! ! !!! !! !! !..!! !!!!! !! !:!! euIleMetGlyValAsnPheMetValSerGlnPheGlySerMetPheThrIleGlu 3179729 : TAATCATGGGTGTTAATTTCATGGTTTCGCAATTTGGCAGCATGTTCACCATAGAA : 3179782 59 : AsnLeuLysThrMetSerGluLysPheSerLeuCysIleSerValPheGlyValSe : 77 !.!:!!:!! !.!. !!!: !! !:!!|||:!!|||||||||! !! !!! ThrValGlnAspPheValAspLeuThrTyrIleCysValSerValPheValGlyCy 3179783 : ACCGTACAAGATTTCGTCGACCTTACTTACATATGCGTCTCCGTGTTCGTCGGTTG : 3179839 78 : rLeuLysValAlaAsnLeuPheLeuGlnArgGlyLysIleIleAsnIleMetAsnS : 96 !! !|||:!!:!!|||:!! ! !!! ! ||| ! ! ||||||:!!:!:||||||! sCysLysLeuSerAsnValValPheTyrArgLysAspIleIleAspLeuMetAsnI 3179840 : TTGCAAGCTGTCAAACGTGGTGTTCTATCGGAAAGATATCATAGACCTGATGAACA : 3179896 97 : erLeuThrLysGluAsnSerIleProArgAspGluGlnGluGluIleIleGlnArg : 114 !!!!! !:!!!!: !!!! ! ! !:!!:!!:!!|||!!: :!:||| ! lePheMetGluAspProCysAlaCysSerAsnLysGluGluAspGlnValGlnAla 3179897 : TCTTCATGGAGGATCCTTGTGCATGTTCGAACAAGGAGGAGGACCAGGTGCAAGCG : 3179950 115 : ArgAsnAspAsnTyrAlaArgLysVal : 123 ||| !!|||:!! ! !|||..!||| ArgTyrAspAspGlnLeuArgSerVal 3179951 : AGATACGACGATCAATTACGGTCAGTA : 3179979 vulgar: AmOr73 2 123 . KQ414646.1 3179619 3179979 + 144 M 20 60 G 1 0 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3179620 3179979 144 + . gene_id 4 ; sequence AmOr73 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3179620 3179979 . + . KQ414646.1 exonerate:protein2genome:local exon 3179620 3179979 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3179620 3179979 144 + . alignment_id 4 ; Query AmOr73 ; Align 3179620 3 60 ; Align 3179680 24 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr73 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 227 -> 301 Target range: 3164983 -> 3165202 228 : PheAlaGluThrValAsnThrValPheGlnTyrMetIlePheLeuGlnPheThrIl : 246 |||:!!:!!! !|||||| !! !|||:!! !!::!:.!!! !|||||| !|| PheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIl 3164984 : TTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCAT : 3165038 247 : eSerSerValValLeuCysLeuSerIleTyrLysPheSerThrValAspProLeuS : 265 ||||! ! !|||:!!|||!!!!:!:!!|||::!.!.!!! !:!! !:!!. eSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIle---LysMetA 3165039 : AAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATC---AAAATGG : 3165092 266 : erMetAsnPheValTrpSerGlyPheTyrLeuCysCysMetLeuMetGlnValTyr : 283 .. ...|||||| !.!!|||! !! !|||! :!!! !|||:!!!:! spThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePhe 3165093 : AcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTT : 3165146 284 : LeuTyrCysTrpPheGlyAsnGluValThrLeuLysSerAsnLysValSerAsp : 301 ! !|||||||||!:!||||||||||||! !! !||| !:!! ! ! ||| TyrTyrCysTrpTyrGlyAsnGluValLysHisLysValAspHisCysHisAsp 3165147 : TACTATTGCTGGTACGGCAACGAAGTGAAACATAAGGTTGATCATTGTcacgat : 3165202 vulgar: AmOr73 227 301 . KQ414646.1 3164983 3165202 + 125 M 34 102 G 1 0 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164984 3165202 125 + . gene_id 5 ; sequence AmOr73 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164984 3165202 . + . KQ414646.1 exonerate:protein2genome:local exon 3164984 3165202 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3164984 3165202 125 + . alignment_id 5 ; Query AmOr73 ; Align 3164984 228 102 ; Align 3165086 263 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr73 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 227 -> 301 Target range: 3158455 -> 3158674 228 : PheAlaGluThrValAsnThrValPheGlnTyrMetIlePheLeuGlnPheThrIl : 246 |||:!!:!!! !|||||| !! !|||:!! !!::!:.!!! !|||||| !|| PheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIl 3158456 : TTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCAT : 3158510 247 : eSerSerValValLeuCysLeuSerIleTyrLysPheSerThrValAspProLeuS : 265 ||||! ! !|||:!!|||!!!!:!:!!|||::!.!.!!! !:!! !:!!. eSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIle---LysMetA 3158511 : AAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATC---AAAATGG : 3158564 266 : erMetAsnPheValTrpSerGlyPheTyrLeuCysCysMetLeuMetGlnValTyr : 283 .. ...|||||| !.!!|||! !! !|||! :!!! !|||:!!!:! spThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePhe 3158565 : AcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTT : 3158618 284 : LeuTyrCysTrpPheGlyAsnGluValThrLeuLysSerAsnLysValSerAsp : 301 ! !|||||||||!:!||||||||||||! ! !||| !:!! ! ! ||| TyrTyrCysTrpTyrGlyAsnGluValLysAspLysValAspHisCysHisAsp 3158619 : TACTATTGTTGGTACGGCAACGAAGTGAAAGATAAGGTTGATCATTGTcacgat : 3158674 vulgar: AmOr73 227 301 . KQ414646.1 3158455 3158674 + 124 M 34 102 G 1 0 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158456 3158674 124 + . gene_id 6 ; sequence AmOr73 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158456 3158674 . + . KQ414646.1 exonerate:protein2genome:local exon 3158456 3158674 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3158456 3158674 124 + . alignment_id 6 ; Query AmOr73 ; Align 3158456 228 102 ; Align 3158558 263 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr73 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 227 -> 291 Target range: 3153456 -> 3153645 228 : PheAlaGluThrValAsnThrValPheGlnTyrMetIlePheLeuGlnPheThrIl : 246 !!.|||:!!! !|||||| ! !.!! ! !!:!: !:!!||||||.!!|| LeuAlaGlnIleValAsnGluLysLeuGlyAsnValSerSerIleGlnPheAlaIl 3153457 : TTGGCGCAAATAGTGAACGAGAAGCTTGGAAATGTCTCGAGTATACAGTTCGCGAT : 3153511 247 : eSerSerValValLeuCysLeuSerIleTyrLysPheSerThrValAspProLeuS : 265 ||||!!!! !!.!:!!|||!!!!:!:!!|||::!.!.|||..!:!!!!: |||. eSerThrGlyAlaIleCysPheAsnLeuTyrArgMetSerValIleGlu---LeuG 3153512 : AAGCACAGGAGCGATATGCTTCAATCTCTATCGAATGTCGGTGATAGAA---CTCG : 3153565 266 : erMetAsnPheValTrpSerGlyPheTyrLeuCysCysMetLeuMetGlnValTyr : 283 !! !!.|||||| :!! ! ! ! ! |||:!:||| !|||:!!!:! lyProLysPheValGluAlaLeuThrIleThrValCysLeuLeuAlaGlnIlePhe 3153566 : GTCCAAAGTTTGTGGAAGCGTTAACTATCACAGTATGCTTACTCGCGCAGATATTT : 3153619 284 : LeuTyrCysTrpPheGlyAsnGlu : 291 ! !|||||||||!::||||||::: TyrTyrCysTrpTyrGlyAsnAsp 3153620 : TACTATTGTTGGTAcggtaacgat : 3153645 vulgar: AmOr73 227 291 . KQ414646.1 3153456 3153645 + 107 M 35 105 G 1 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153457 3153645 107 + . gene_id 7 ; sequence AmOr73 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153457 3153645 . + . KQ414646.1 exonerate:protein2genome:local exon 3153457 3153645 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3153457 3153645 107 + . alignment_id 7 ; Query AmOr73 ; Align 3153457 228 105 ; Align 3153562 264 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr73 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 0 -> 127 Target range: 3163849 -> 3164230 1 : MetHisLysLeuSerLeuSerPheAlaLeuLeuThrTyrGlyGlyTyrTrpArgPr : 19 ||| ! !|||!.!! !!!!! !||||||! ! !..!|||! !!::! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 3163850 : ATGAGTGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTACCTGCC : 3163904 20 : oThrLysTrpProAlaSerSerTyrLysTyrHisLeuTyrAsnIleTyrSerAlaP : 38 | !..!||| .!!!!! !!!:!:!! !|||||||||||||||.!!!.!| oHisSerTrp---ThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValP 3163905 : CCATTCGTGG---ACAACGCCGTTCGAAAGGTCTTTGTACAATATCTACGGGGTGT : 3163958 39 : heMetIlePheLeuLeuTyrPheIleThrPheCysThrCysValAspSerLeuIle : 56 || :!:.!!|||||| ! !:!!.!!.!!! ! :!!||| ! !||| heTyrLeuLeuLeuLeuSerSerLeuAlaLeuSerGlnIleLeuAspValAlaIle 3163959 : TCTACTTGCTTCTTCTAAGCAGCCTCGCCCTCTCGCAAATATTAGACGTAGCGATC : 3164012 57 : Ser<->LysAsnLeuLysThrMetSerGluLysPheSerLeuCysIleSerValPh : 74 !:! :!!!:!! ! ! !.!.|||:::...||||||::: ! !||||| AsnValGluSerGlnAspAspPheSerAspAsnPheSerIleThrAlaValValPh 3164013 : AACGTGGAGAGCCAGGATGACTTCagtgacaatttttctatcaccGCTGTGGTGTT : 3164069 75 : eGlyValSerLeuLysValAlaAsnLeuPheLeuGlnArgGlyLysIleIleAsnI : 93 | !..!!!!!!!|||:!!:!!! !|||.!!:!!!:!||||||!!..!!||| !: eLeuThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheL 3164070 : TCTCACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTC : 3164126 94 : leMetAsnSerLeuThrLysGluAsnSerIleProArgAspGluGlnGluGluIle : 111 !:!!::!!!!!||| !!!.:!! ! ! !||| !||| !:!!|||.!. euIleAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGlu 3164127 : TGATCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAG : 3164180 112 : IleGlnArgArgAsnAspAsnTyrAlaArgLysValThrIleTyrCys : 127 |||::! !!:! !!!:!!. !.!!..! !!||| !:!!! ||| IleArgAlaLysPheGluLysIleThrGlu***Val***ValSerCys 3164181 : ATTAGAGCGAAATTCGAGAAGATCACCGAGTAAGTTTGAGTATCATGT : 3164230 vulgar: AmOr73 0 127 . KQ414646.1 3163849 3164230 + 104 M 22 66 G 1 0 M 34 102 G 0 3 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3163850 3164230 104 + . gene_id 8 ; sequence AmOr73 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3163850 3164230 . + . KQ414646.1 exonerate:protein2genome:local exon 3163850 3164230 . + . insertions 3 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3163850 3164230 104 + . alignment_id 8 ; Query AmOr73 ; Align 3163850 1 66 ; Align 3163916 24 102 ; Align 3164021 58 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr73 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 0 -> 127 Target range: 3157321 -> 3157702 1 : MetHisLysLeuSerLeuSerPheAlaLeuLeuThrTyrGlyGlyTyrTrpArgPr : 19 ||| ! !|||!.!! !!!!! !||||||! ! !..!|||! !!::! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 3157322 : ATGAGCGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTATCTGCC : 3157376 20 : oThrLysTrpProAlaSerSerTyrLysTyrHisLeuTyrAsnIleTyrSerAlaP : 38 | !..!||| .!!!!! !!!:!:!! !|||||||||||||||.!!!..| oHisSerTrp---ThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValP 3157377 : CCATTCGTGG---ACAACACCGTTCGAAAGGTCTTTGTACAATATCTACGGGGtgt : 3157430 39 : heMetIlePheLeuLeuTyrPheIleThrPheCysThrCysValAspSerLeuIle : 56 || ......|||||| ! !:!!..!.!!! ! :!!||| ! !||| heSerPheLeuLeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIle 3157431 : tctcctttcttcttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATC : 3157484 57 : Ser<->LysAsnLeuLysThrMetSerGluLysPheSerLeuCysIleSerValPh : 74 !:! :!!!:!! ! ! !.!.|||:::...||||||::: ! ! !||||| AsnValGluSerGlnAspAspPheSerAspAsnPheSerValThrAlaValValPh 3157485 : AACGTGGAGAGCCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTT : 3157541 75 : eGlyValSerLeuLysValAlaAsnLeuPheLeuGlnArgGlyLysIleIleAsnI : 93 | !..!!!!!!!|||:!!:!!! !|||.!!:!!!:!||||||!!..!!||| !: eLeuThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheL 3157542 : TCTCACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTC : 3157598 94 : leMetAsnSerLeuThrLysGluAsnSerIleProArgAspGluGlnGluGluIle : 111 !:!!::!!!!!||| !!!.:!! ! ! !||| !||| !:!!|||.!. euIleAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGlu 3157599 : TGATCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAG : 3157652 112 : IleGlnArgArgAsnAspAsnTyrAlaArgLysValThrIleTyrCys : 127 |||::! !!:! !!!:!!. !.!!..! !!||| !:!!! ||| IleArgAlaLysPheGluLysIleThrGlu***Val***ValSerCys 3157653 : ATTAGAGCGAAATTCGAGAAGATCACCGAGTAAGTTTGAGTATCATGT : 3157702 vulgar: AmOr73 0 127 . KQ414646.1 3157321 3157702 + 101 M 22 66 G 1 0 M 34 102 G 0 3 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157322 3157702 101 + . gene_id 9 ; sequence AmOr73 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3157322 3157702 . + . KQ414646.1 exonerate:protein2genome:local exon 3157322 3157702 . + . insertions 3 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3157322 3157702 101 + . alignment_id 9 ; Query AmOr73 ; Align 3157322 1 66 ; Align 3157388 24 102 ; Align 3157493 58 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr72 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 500 Query range: 133 -> 370 Target range: 3164355 -> 3165542 134 : CysLeuValAlaLeuIleGlyAlaThrLeuIleThrAspPheLysLysLysLysLe : 152 ||| ! !! !:!! !! ! !:!!|||:!:|||||||||!..!..!:!||||| CysAlaPheTrpIleTyrValArgSerLeuLeuThrAspPheSerSerArgLysLe 3164356 : TGTGCGTTCTGGATATACGTGAGATCGCTTTTGACAGATTTTAGTAGTAGAAAACT : 3164410 153 : uThrPheGluAlaTrpIleProPheAsnTyrThrAlaSerTrpPheLeuPheSerL : 171 |! !|||..!||||||:!!|||!:!:!!|||:!! !!:!! !:!!|||! !| uMetPheArgAlaTrpLeuProTyrAspTyrSerProAla---ProIlePheIleL 3164411 : GATGTTTCGAGCATGGTTACCCTACGATTACTCCCCTGCG---CCCATTTTTATCC : 3164464 172 : euThrPheIleHisGlnCysGlyCysAlaValValThrSerPheGlyIleSerIle : 189 ||||||||:!!||||||..! !..!|||..!:!! !!!! !..!! ! !! ! euThrPheValHisGlnAlaIleAlaAlaThrIleCysCysThrSerSerValThr 3164465 : TTACCTTCGTCCATCAAGCTATAGCCGCGACGATATGTTGCACTTCGAGCGTCACT : 3164518 190 : PheAspThrLeuPheAlaGlyLeuLeuLeuGlnValCysCysGlnLeuAspThrLe : 208 ! |||:!!|||!:!.!!|||||||||:!!.!.:!!! !||||||!!!!!:! !|| ValAspSerLeuTyrThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLe 3164519 : GTGGATTCTCTATACACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACT : 3164575 209 : uValTyrArgLeuGlnAsnIleLysGluAspAlaIleGlnSerLeuLysTyrCysA : 227 |! !:!!||||||::!|||:!!||| !!: ! !.!.|||:!!||| ! |||| uGluHisArgLeuArgAsnValLysThrGluGlnAspAspSerValLysGlnCysA 3164576 : AGAACATCGTCTAAGGAACGTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTG : 3164632 228 : laArgGlnHisGluLeuIleTyr{Ar} >>>> Target Intron 1 >>>> : 235 ||!:!!!.|||!!:! !||||||{!:} 325 bp laGlnHisHisAspArgIleTyr{Gl}++ ++ 3164633 : CTCAACATCACGATCGTATATAC{CA}gt.........................ag : 3164981 236 : {g}PheThrGluLeuMetAsnLysLeuPheSerSerIleLeuCysLeuGlnPheLe : 253 {!}|||:!!:!! !:!!|||:!! !|||!.! !|||||| !! !||||||! {n}PheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3164982 : {A}TTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3165035 254 : uIleSerAlaValAlaIleCysPheSerValTyrArgValIleTyrThrLysThrA : 272 !|||||| ! !!.!|||||||||!:!:!!||||||:!!! ! ! ! !|||! !| sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetA 3165036 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGG : 3165092 273 : spSerGlnPheAlaGlyAlaIleIlePheValPheSerAlaLeuIleGlnIlePhe : 290 ||::::::|||... |||:!!!:! !|||!!!.!!:!!! ||||||||| spThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePhe 3165093 : AcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTT : 3165146 291 : TyrPheCysTrpHisGlyAspIleAlaLysTyrLys >>>> Target Intron : 303 |||!:!||||||:!!|||:!! !!.!|||:!!||| 80 bp TyrTyrCysTrpTyrGlyAsnGluValLysHisLys++ 3165147 : TACTATTGCTGGTACGGCAACGAAGTGAAACATAAGgt.................. : 3165187 304 : 2 >>>> SerLeuGluIleProAspMetIlePheAsnSerAsnTrpProAsnLe : 318 ||||||:!!:!!||| !!|||||||||:!!|||:!!||| !!::!|| ++SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSerLe 3165188 : .......agAGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTT : 3165310 319 : uSerAsnGluAlaLysLysIleLeuLeuIleIleMetAlaArgSerLeuThrProV : 337 |!:!|||.!.!.!! !:! !|||||||||!!:||| !|||:!!:!!! !|||: uAsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgProI 3165311 : GAACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAA : 3165367 338 : alGluValValSerAlaHisIleIleProLeuAsnLeuGluSerPheLysArg > : 355 !!||| !!..!||| !|||:!!:!! !!:!!|||||||||||||||! ! ! leGluPheThrSerIleHisValValSerValAsnLeuGluSerPheMetAla++ 3165368 : TAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt. : 3165423 356 : >>> Target Intron 3 >>>> LeuIleLysAlaThrTyrSerAlaTyrAsn : 364 74 bp :!!||||||.!!:!!|||||||||!:!||| ++ValIleLysThrSerTyrSerAlaPheAsn 3165424 : ........................agGTAATAAAAACTTCGTACTCCGCGTTCAAC : 3165522 365 : MetLeuGlnGlnThrLys : 370 |||:!!||||||!:!||| MetIleGlnGlnSerLys 3165523 : ATGATCCAACAAAGCAAA : 3165542 vulgar: AmOr72 133 370 . KQ414646.1 3164355 3165542 + 500 M 32 96 G 1 0 M 68 204 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 67 201 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164356 3165542 500 + . gene_id 1 ; sequence AmOr72 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3164356 3164657 . + . KQ414646.1 exonerate:protein2genome:local exon 3164356 3164657 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3164658 3164659 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164658 3164982 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3164981 3164982 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164983 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164983 3165184 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165185 3165186 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165185 3165264 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3165263 3165264 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165265 3165420 . + . KQ414646.1 exonerate:protein2genome:local exon 3165265 3165420 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165421 3165422 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165421 3165494 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3165493 3165494 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165495 3165542 . + . KQ414646.1 exonerate:protein2genome:local exon 3165495 3165542 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164356 3165542 500 + . alignment_id 1 ; Query AmOr72 ; Align 3164356 134 96 ; Align 3164452 167 204 ; Align 3164984 236 201 ; Align 3165265 303 156 ; Align 3165495 355 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr72 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 439 Query range: 0 -> 370 Target range: 3152421 -> 3154098 1 : MetHisLeuLeuArgTrpThrPheLysLeuPheValAlaThrGlyTyrPheLeuSe : 19 ||| !! !|||!!!|||||||||||||||.!...!!.!!.!||| !.!. ! ! MetAspThrLeuSerTrpThrPheLysLeuLeuThrValAsnGlyIleLeuAlaPr 3152422 : aTGGATACTCTAAGCTGGACGTTCAAGCTTCTGACGGTGAACGGTATTCTGGCACC : 3152476 20 : rProLysIleLysSerProArgLysArgPheLeuTyrAsnValTyrThrValValV : 38 ! !! .!!! !|||! ! !!:!!! !.!!||||||...:!!|||! ! !! !!: oSerAlaPheMetSerGlnTrpGlnThrIleLeuTyrGlyMetTyrMetPhePheM 3152477 : GTCCGCTTTCATGTCTCAGTGGCAGACGATTTTGTACGGGATGTACATGTTCTTCA : 3152533 39 : alThrLeuPheLeuLeuSerPheLeuLeuThrLeuIleMetGlnIleValPheAsn : 56 !!..!! !.!.|||! !:!!.!. !! ! !||||||:!! !!::!!|||||| etValSerMetLeuTyrAlaMetGluCysCysLeuIleLeuGlyMetIlePheAsn 3152534 : TGGTGTCGATGCTCTACGCGATGGAGTGCTGCCTGATCTTGGGCATGATATTCAAC : 3152587 57 : ValArgThrAlaAspGluLeuSerGluAsnPheGlyIleThrIleThrValPheTh : 75 ||| !!:! !!!:!!:!!!|||||||||.!. !||||||:!:! !:!!.!. ValAspSerGlnGluAspPheSerGluAsnLeuTyrIleThrLeuIleLeuMetCy 3152588 : GTGGACAGTCAGGAGGATTTCAGCGAGAATCTGTATATCACGTTGATACTGATGTG : 3152644 76 : rThrIleCysLysPheIleAsnLeuLeuPheArgArgGlyIleIleIleSerLeuL : 94 !!:! !||||||.!! !! |||:!! ! ! ! ! |||! ! !:!!: sSerCysCysLysIleTyrMetLeuValThrSerAlaLysGlyIleLysValMetV 3152645 : CAGCTGTTGCAAAATCTACATGCTGGTCACTTCTGCGAAGGGGATCAAAGTTATGG : 3152701 95 : euAspLeuLeuGlnLysGluProPheLeuProMetAspIleGluGluIleLysIle : 112 !!|||:!!|||!:!:!!|||||||||:!!||||||:!!! !||||||! !:!!||| alAspValLeuArgGluGluProPheValProMetAsnArgGluGluAsnGluIle 3152702 : TGGACGTCCTTCGAGAGGAGCCTTTCGTGCCTATGAACAGAGAAGAGAACGAGATT : 3152755 113 : HisThrLysTyrAsnLysLeuIleGluLys{Va} >>>> Target Intron 1 : 123 .....!!:!!:!.!.:!! !||||||!..{ } 330 bp ArgValArgPheGluGluLysIleGluSer{As}++ 3152756 : AGAGTGAGATTCGAGGAGAAAATCGAGAGT{AA}gt.................... : 3152792 124 : >>>> {l}SerIlePheTyrThrLeuGlnAsnValSerCysLeuValAlaLeuI : 139 {!}:!!! !||||||! ! ! !! !! :!!|||!.!||| +-{n}AlaLysAlaTyrThrTyrPheLeuAspIleLeuValValValLeuT 3152793 : .....aa{C}GCTAAGGCTTACACATATTTCCTGGACATCTTGGTAGTCGTTTTAT : 3153166 140 : leGlyAlaThrLeuIleThrAspPheLysLysLysLysLeuThrPheGluAlaTrp : 157 !.!!:!!! !.!!||||||!:!!:!::::::|||... |||.....!||| rpIleThrSerTyrPheThrAspTyrArgArgArgLysPheLysPheArgValTrp 3153167 : GGATAACATCGTACTTCACGGACTACAGGcgcagaaaattcaaatttcgcgtCTGG : 3153220 158 : IleProPheAsnTyrThrAlaSerTrpPheLeuPheSerLeuThrPheIleHisGl : 176 :!!|||!:!:!! |||.!!!!! !:!!|||!!!|||! !!:! !!!.|| LeuProTyrAsp---ThrThrThrGlnProValPheThrLeuIleTyrCysGlnGl 3153221 : TTACCTTACGAC---ACTACTACACAACCTGTCTTCACTCTGATCTACTGTCAACA : 3153274 177 : nCysGlyCysAlaValValThrSerPheGlyIleSerIlePheAspThrLeuPheA : 195 | !! !|||.!! ! !!:! ! ! !! ! !|||! !||| !||||||: nIleValCysThrTrpTyrSerValAsnIleAsnValIleCysAspCysLeuPheS 3153275 : GATCGTCTGCACGTGGTACAGCGTGAATATTAACGTCATTTGCGACTGCCTGTTCA : 3153331 196 : laGlyLeuLeuLeuGlnValCysCysGlnLeuAspThrLeuValTyrArgLeuGln : 213 :!||||||:!!:!!|||:!!|||! ||| ! !:!! ! !! !! !!:! erGlyLeuMetIleGlnIleCysSerIleLeuArgLysMetLysProThrArgArg 3153332 : GCGGCCTGATGATACAGATTTGCTCAATCTTACGGAAGATGAAACCTACTCGGCGA : 3153385 214 : AsnIleLysGluAspAlaIleGlnSerLeuLysTyrCysAlaArgGlnHisGluLe : 232 ||| ! ! ! !.!!||| !!!! !! ! ! :!!||||||... AsnCysValLeuValThrIleIleArgTyrThrSerGlnSerArgGlnGluIleLy 3153386 : AACTGTGTGCTCGTCACCATAATCAGATATACAAGCCAGTCTCGacaagaaattaa : 3153442 233 : uIleTyrArg<->PheThrGluLeuMetAsnLysLeuPheSerSerIleLeuCysL : 250 ||| ! !!..!!:!!:!!:!!|||:!! !.!!.!!!:!:!!! ! !!: sArgTyrVal***LeuAlaGlnIleValAsnGluLysLeuGlyAsnValSerSerI 3153443 : acgatacgTTTGATTGGCGCAAATAGTGAACGAGAAGCTTGGAAATGTCTCGAGTA : 3153499 251 : euGlnPheLeuIleSerAlaValAlaIleCysPheSerValTyrArgValIleTyr : 268 !!|||||| !||||||.!!! !||||||||||||!:!:!!||||||:!! leGlnPheAlaIleSerThrGlyAlaIleCysPheAsnLeuTyrArgMetSerVal 3153500 : TACAGTTCGCGATAAGCACAGGAGCGATATGCTTCAATCTCTATCGAATGTCGGTG : 3153553 269 : ThrLysThrAspSerGlnPheAlaGlyAlaIleIlePheValPheSerAlaLeuIl : 287 ! !:!! !! ! !!:!!|||!.!! !|||:!!! !.!!..! ! !!! !||| IleGluLeuGlyProLysPheValGluAlaLeuThrIleThrValCysLeuLeuAl 3153554 : ATAGAACTCGGTCCAAAGTTTGTGGAAGCGTTAACTATCACAGTATGCTTACTCGC : 3153610 288 : eGlnIlePheTyrPheCysTrpHisGlyAspIleAlaLysTyrLys >>>> Tar : 303 ||||||||||||!:!||||||:!:|||::: ...||| ! aGlnIlePheTyrTyrCysTrpTyrGlyAsnAspArgAsnTyrAsp-- 3153611 : GCAGATATTTTACTATTGTTGGTAcggtaacgatagaaattacgATag........ : 3153660 304 : get Intron 2 >>>> SerLeuGluIleProAspMetIlePheAsnSerAsnT : 315 53 bp |||||||||||| !|||! :!! ||||||||| ++SerLeuGluIleValAspArgValThrAsnSerAsnI 3153661 : .................agAGTCTCGAAATTGTGGACAGAGTAACGAACAGTAATA : 3153747 316 : rpProAsnLeuSerAsnGluAlaLysLysIleLeuLeuIleIleMetAlaArgSer : 333 !! ! !..!.!....:!!||||||||||||:!!:!:!!:!!: !|||:!! leThrValSerAspGluSerSerLysLysIleLeuValLeuMetIleArgArgAla 3153748 : TAACCGTGTCGGACGAAAGCTCCAAGAAGATTCTGGTATTGATGATACGACGAGCT : 3153801 334 : LeuThrProValGluValValSerAlaHisIleIleProLeuAsnLeuGluSerPh : 352 ||| !||||||||| !!..!.!! !!.!|||!!: !!:!!|||||||||||||| LeuGluProValGluPheThrGlyLeuArgIleMetSerValAsnLeuGluSerPh 3153802 : TTGGAGCCTGTCGAGTTCACCGGCCTTCGTATCATGTCTGTTAATCTCGAGTCATT : 3153858 353 : eLysArg >>>> Target Intron 3 >>>> LeuIleLysAlaThrTyrSe : 361 |! ! ! 184 bp |||:!:|||:!!:!!|||:! eThrSer++ ++LeuLeuLysSerSerTyrAl 3153859 : CACGTCGgt.........................agCTGTTGAAATCCTCCTACGC : 3154069 362 : rAlaTyrAsnMetLeuGlnGlnThrLys : 370 !|||!:!||||||||||||::: ::: aAlaPheAsnMetLeuGlnGluArgArg 3154070 : GGCTTTCAATATGCTCCaggaaagaagg : 3154098 vulgar: AmOr72 0 370 . KQ414646.1 3152421 3154098 + 439 M 122 366 S 0 2 5 0 2 I 0 326 3 0 2 S 1 1 M 38 114 G 1 0 M 73 219 G 0 3 M 67 201 5 0 2 I 0 49 3 0 2 M 52 156 5 0 2 I 0 180 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3152422 3154098 439 + . gene_id 2 ; sequence AmOr72 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3152422 3152789 . + . KQ414646.1 exonerate:protein2genome:local exon 3152422 3152789 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3152790 3152791 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3152790 3153119 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3153118 3153119 . + . intron_id 0 ; splice_site "AA" KQ414646.1 exonerate:protein2genome:local cds 3153120 3153657 . + . KQ414646.1 exonerate:protein2genome:local exon 3153120 3153657 . + . insertions 3 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3153658 3153659 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local intron 3153658 3153710 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3153709 3153710 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3153711 3153866 . + . KQ414646.1 exonerate:protein2genome:local exon 3153711 3153866 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3153867 3153868 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3153867 3154050 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3154049 3154050 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3154051 3154098 . + . KQ414646.1 exonerate:protein2genome:local exon 3154051 3154098 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3152422 3154098 439 + . alignment_id 2 ; Query AmOr72 ; Align 3152422 1 366 ; Align 3153121 124 114 ; Align 3153235 163 219 ; Align 3153457 236 201 ; Align 3153711 303 156 ; Align 3154051 355 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr72 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 313 Query range: 234 -> 370 Target range: 3158452 -> 3159014 235 : ArgPheThrGluLeuMetAsnLysLeuPheSerSerIleLeuCysLeuGlnPheLe : 253 ||||||:!!:!! !:!!|||:!! !|||!.! !|||||| !! !||||||! ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3158453 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3158507 254 : uIleSerAlaValAlaIleCysPheSerValTyrArgValIleTyrThrLysThrA : 272 !|||||| ! !!.!|||||||||!:!:!!||||||:!!! ! ! ! !|||! !| sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetA 3158508 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGG : 3158564 273 : spSerGlnPheAlaGlyAlaIleIlePheValPheSerAlaLeuIleGlnIlePhe : 290 ||::::::|||... |||:!!!:! !|||!!!.!!:!!! ||||||||| spThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePhe 3158565 : AcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTT : 3158618 291 : TyrPheCysTrpHisGlyAspIleAlaLysTyrLys >>>> Target Intron : 303 |||!:!||||||:!!|||:!! !!.!||| !!||| 80 bp TyrTyrCysTrpTyrGlyAsnGluValLysAspLys++ 3158619 : TACTATTGTTGGTACGGCAACGAAGTGAAAGATAAGgt.................. : 3158659 304 : 1 >>>> SerLeuGluIleProAspMetIlePheAsnSerAsnTrpProAsnLe : 318 ||||||:!!:!!||| !!|||||||||:!!|||:!!||| !!::!|| ++SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSerLe 3158660 : .......agAGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTT : 3158782 319 : uSerAsnGluAlaLysLysIleLeuLeuIleIleMetAlaArgSerLeuThrProV : 337 |!:!|||.!.!.!! !:! !|||||||||!!:||| !|||:!!:!!! !|||: uAsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgProI 3158783 : GAACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAA : 3158839 338 : alGluValValSerAlaHisIleIleProLeuAsnLeuGluSerPheLysArg > : 355 !!||| !!..!||| !|||:!!:!! !!:!!|||||||||||||||! ! ! leGluPheThrSerIleHisValValSerValAsnLeuGluSerPheMetAla++ 3158840 : TAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt. : 3158895 356 : >>> Target Intron 2 >>>> LeuIleLysAlaThrTyrSerAlaTyrAsn : 364 74 bp :!!||||||.!!.!!|||||||||!:!||| ++ValIleLysThrAlaTyrSerAlaPheAsn 3158896 : ........................agGTAATAAAAACTGCGTACTCCGCGTTCAAC : 3158994 365 : MetLeuGlnGlnThrLys : 370 |||:!!||||||!:!||| MetIleGlnGlnSerLys 3158995 : ATGATCCAACAAAGCAAA : 3159014 vulgar: AmOr72 234 370 . KQ414646.1 3158452 3159014 + 313 M 68 204 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158453 3159014 313 + . gene_id 3 ; sequence AmOr72 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3158453 3158656 . + . KQ414646.1 exonerate:protein2genome:local exon 3158453 3158656 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158657 3158658 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158657 3158736 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3158735 3158736 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158737 3158892 . + . KQ414646.1 exonerate:protein2genome:local exon 3158737 3158892 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158893 3158894 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158893 3158966 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3158965 3158966 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158967 3159014 . + . KQ414646.1 exonerate:protein2genome:local exon 3158967 3159014 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3158453 3159014 313 + . alignment_id 3 ; Query AmOr72 ; Align 3158453 235 204 ; Align 3158737 303 156 ; Align 3158967 355 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr72 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 194 Query range: 120 -> 236 Target range: 3160053 -> 3160401 121 : GluLysValSerIlePheTyrThrLeuGlnAsnValSerCysLeuValAlaLeuIl : 139 ..!|||:!!|||!!: !||||||:!! !..||| ! !! !..!!.!:!! ArgLysLeuSerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValTr 3160054 : AGAAAGCTCTCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTATG : 3160108 140 : eGlyAlaThrLeuIleThrAspPheLysLysLysLysLeuThrPheGluAlaTrpI : 158 ! !:!! !!!:|||! |||!:!! !:!:!!||| !!.!!..!!.!|||: pMetLeuSerAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrpL 3160109 : GATGTTGTCGGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGGT : 3160165 159 : leProPheAsnTyrThrAlaSerTrpPheLeuPheSerLeuThrPheIleHisGln : 176 !!||||||:!!|||! !|||!!!! ! !:!!||||||||||||!:! !:!!||| euProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGln 3160166 : TACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAG : 3160219 177 : CysGlyCysAlaValValThrSerPheGlyIleSerIlePheAspThrLeuPheAl : 195 ! !! ! ! !:!! !!! !!!! !!.!|||! ! ! !|||!.!||||||:: PheValThrLeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheSe 3160220 : TTTGTAACTCTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCAG : 3160276 196 : aGlyLeuLeuLeuGlnValCysCysGlnLeuAspThrLeuValTyrArgLeuGlnA : 214 !|||||||||:!!!!.:!!! !||||||!!!!!:! !||| !:!!||||||:!!! rGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysS 3160277 : CGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGA : 3160333 215 : snIleLysGluAspAlaIleGlnSerLeuLysTyrCysAlaArgGlnHisGluLeu : 232 :!|||||| ||| ! ! ||| !||| ! |||||| !!!.||| ! ! ! erIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrArg 3160334 : GCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGC : 3160387 233 : IleTyrArgPhe : 236 ||||||!:!||| IleTyrLysPhe 3160388 : ATATACAAGTTT : 3160401 vulgar: AmOr72 120 236 . KQ414646.1 3160053 3160401 + 194 M 116 348 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160054 3160401 194 + . gene_id 4 ; sequence AmOr72 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160054 3160401 . + . KQ414646.1 exonerate:protein2genome:local exon 3160054 3160401 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160054 3160401 194 + . alignment_id 4 ; Query AmOr72 ; Align 3160054 121 348 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr72 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 182 Query range: 0 -> 120 Target range: 3149023 -> 3149383 1 : MetHisLeuLeuArgTrpThrPheLysLeuPheValAlaThrGlyTyrPheLeuSe : 19 ||| !:!!|||||| .!!|||!!.:!!.!...! ! !|||! !!:: ! ! MetAlaIleLeuArgProAlaPheAsnIleLeuThrIleCysGlyCysTrpArgPr 3149024 : ATGGCTATCTTACGGCCAGCTTTCAACATACTGACGATCTGCGGATGCTGGAGGCC : 3149078 20 : rProLysIleLysSerProArgLysArgPheLeuTyrAsnValTyrThrValValV : 38 ! !..! !::!!!! !!||| !:! ! !|||! !|||||||||:!! !!| oCysSerCysArgThrThrArgAlaLysAlaAlaTyrIleValTyrThrMetPheV 3149079 : GTGCTCGTGCCGAACGACACGCGCCAAGGCCGCGTACATCGTTTACACGATGTTCG : 3149135 39 : alThrLeuPheLeuLeuSerPheLeuLeuThrLeuIleMetGlnIleValPheAsn : 56 ||..!|||!!.|||! !||||||! !:!:::: .........:::::!.!.||| alValLeuLeuLeuHisSerPheCysIleSerGlnPhePheAsnValIleLeuAsn 3149136 : TGGTACTTTTATTGCACAGCTTCTGCATctcgcaatttttcaacgtgatACTGAAC : 3149189 57 : ValArgThrAlaAspGluLeuSerGluAsnPheGlyIleThrIleThrValPheTh : 75 :!!||||||||||||||||||||||||!:!||| !!!: !|||.!! ! !! LeuArgThrAlaAspGluLeuSerGluSerPheTyrMetPheIleAlaSerValLe 3149190 : TTGAGAACGGCGGACGAGCTGAGCGAGAGTTTCTACATGTTCATCGCGTCCGTTCT : 3149246 76 : rThrIleCysLysPheIleAsnLeuLeuPheArgArgGlyIleIleIleSerLeuL : 94 !:!! !||||||.!!:!!!..|||||| !.!!.!|||! !||| ! !|||! uSerCysCysLysIleValThrLeuLeuThrAsnHisGlySerIleGluIleLeuA 3149247 : GTCCTGCTGCAAGATCGTCACGCTGCTGACGAACCACGGAAGCATCGAGATCCTCC : 3149303 95 : euAspLeuLeuGlnLysGluProPheLeuProMetAspIleGluGluIleLysIle : 112 ! !|||:!!:!!||||||! ! !|||:!!..! !|||||| ! ||| rgArgArgLeuGluGluGluProCysLysProValSerAlaGluGluAlaValIle 3149304 : GGAGGAGACTGGAGGAGGAGCCGTGTAAACCTGTGAGCGCCGAGGAGGCTGTCATA : 3149357 113 : HisThrLysTyrAsnLysLeuIle : 120 !!.!:!|||!:!:!!!:! !||| GlnSerLysPheAspArgAsnIle 3149358 : CAGAGTAAATTCGACAGAAACATC : 3149383 vulgar: AmOr72 0 120 . KQ414646.1 3149023 3149383 + 182 M 120 360 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3149024 3149383 182 + . gene_id 5 ; sequence AmOr72 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3149024 3149383 . + . KQ414646.1 exonerate:protein2genome:local exon 3149024 3149383 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3149024 3149383 182 + . alignment_id 5 ; Query AmOr72 ; Align 3149024 1 360 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr72 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 140 -> 236 Target range: 3174323 -> 3174612 141 : AlaThrLeuIleThrAspPheLysLysLysLysLeuThrPheGluAlaTrpIle-P : 159 :!!:!!:!!.!!|||! !||||||! !:!:!!||| !!.!!..!!.!|||:!!#| SerSerIlePheThrAlaPheLysIleArgGluLeuProLeuArgGlyTrpLeu#P 3174324 : TCGTCGATCTTCACGGCTTTTAAGATCAGAGAGTTACCCCTTCGAGGATGGTTAAC : 3174379 160 : roPheAsnTyrThrAlaSerTrpPheLeuPheSerLeuThrPheIleHisGlnCys : 177 |||||:!!|||! !|||!!!! ! !:!!||||||||||||!:! !:!!|||! ! roPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGlnPhe 3174380 : CTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAGTTT : 3174433 178 : GlyCysAlaValValThrSerPheGlyIleSerIlePheAspThrLeuPheAlaGl : 196 ! ! ! !:!! !! !!!!! !!.!|||! ! !! !|||!.!||||||::!|| ValThrLeuIlePheLeuThrSerAlaIleIleGlySerAspAsnLeuPheSerGl 3174434 : GTAACTCTGATATTCCTTACTTCTGCTATTATCGGTTCTGACAATCTATTCAGCGG : 3174490 197 : yLeuLeuLeuGlnValCysCysGlnLeuAspThrLeuValTyrArgLeuGlnAsnI : 215 |||||||:!!!!.:!!! !||||||!!!!!:! !||| !:!!||||||:!!!:!| yLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysSerI 3174491 : ACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGAGCA : 3174547 216 : leLysGluAspAlaIleGlnSerLeuLysTyrCysAlaArgGlnHisGluLeuIle : 233 ||||| ||| ! ! ||| !||| ! |||||| !!!.||| ! ! !||| leLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrArgIle 3174548 : TTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGCATA : 3174601 234 : TyrArgPhe : 236 |||!:!||| TyrLysPhe 3174602 : TACAAGTTT : 3174612 vulgar: AmOr72 140 236 . KQ414646.1 3174323 3174612 + 158 M 18 54 F 0 1 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174324 3174612 158 + . gene_id 6 ; sequence AmOr72 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174324 3174612 . + . KQ414646.1 exonerate:protein2genome:local exon 3174324 3174612 . + . insertions 0 ; deletions 0 ; frameshifts 1 KQ414646.1 exonerate:protein2genome:local similarity 3174324 3174612 158 + . alignment_id 6 ; Query AmOr72 ; Align 3174324 141 54 ; Align 3174379 159 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr72 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 302 -> 360 Target range: 3161001 -> 3161175 303 : SerLeuGluIleProAspMetIlePheAsnSerAsnTrpProAsnLeuSerAsnGl : 321 |||||||||||| !|||! :!!|||.!.||||||||| !! ||||||.!... SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSe 3161002 : AGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAG : 3161056 322 : uAlaLysLysIleLeuLeuIleIleMetAlaArgSerLeuThrProValGluValV : 340 ..!!||||||! !||||||! |||||| !|||||||||! !|||:!!||| !!. rThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheT 3161057 : CACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCA : 3161113 341 : alSerAlaHisIleIleProLeuAsnLeuGluSerPheLysArgLeuIleLysAla : 358 .!.!!||| !:!!.!!|||:!!||||||||||||||||||!!!:!! ! hrGlyAlaPheValPheProValAsnLeuGluSerPheLysSerValCysIleLys 3161114 : CCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAAAGTGTTTGTatcaaa : 3161167 359 : ThrTyr : 360 ||| IleTyr 3161168 : atatat : 3161175 vulgar: AmOr72 302 360 . KQ414646.1 3161001 3161175 + 149 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3161002 3161175 149 + . gene_id 7 ; sequence AmOr72 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3161002 3161175 . + . KQ414646.1 exonerate:protein2genome:local exon 3161002 3161175 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3161002 3161175 149 + . alignment_id 7 ; Query AmOr72 ; Align 3161002 303 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr72 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 302 -> 360 Target range: 3175212 -> 3175386 303 : SerLeuGluIleProAspMetIlePheAsnSerAsnTrpProAsnLeuSerAsnGl : 321 |||||||||||| !|||! :!!|||.!.||||||||| !! ||||||.!... SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSe 3175213 : AGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAG : 3175267 322 : uAlaLysLysIleLeuLeuIleIleMetAlaArgSerLeuThrProValGluValV : 340 ..!!||||||! !||||||! |||||| !|||||||||! !|||:!!||| !!. rThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheT 3175268 : CACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCA : 3175324 341 : alSerAlaHisIleIleProLeuAsnLeuGluSerPheLysArgLeuIleLysAla : 358 .!.!!||| !:!!.!!|||:!!||||||||||||||||||!!!:!! ! hrGlyAlaPheValPheProValAsnLeuGluSerPheLysSerValCysIleLys 3175325 : CCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAAAGTGTTTGTatcaaa : 3175378 359 : ThrTyr : 360 ||| IleTyr 3175379 : atatat : 3175386 vulgar: AmOr72 302 360 . KQ414646.1 3175212 3175386 + 149 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3175213 3175386 149 + . gene_id 8 ; sequence AmOr72 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3175213 3175386 . + . KQ414646.1 exonerate:protein2genome:local exon 3175213 3175386 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3175213 3175386 149 + . alignment_id 8 ; Query AmOr72 ; Align 3175213 303 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr72 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 22 -> 123 Target range: 3179679 -> 3179979 23 : LysSerProArgLysArgPheLeuTyrAsnValTyrThrValValValThrLeuPh : 41 ...||| !! !|||! ! :!!||||||||||||||||||:!!||| !:!!.! SerSerThrTyrLysThrAlaIleTyrAsnValTyrThrValLeuValLeuIleMe 3179680 : TCTTCGACGTACAAAACGGCAATCTACAATGTCTACACCGTTCTCGTATTAATCAT : 3179734 42 : eLeuLeuSerPheLeuLeuThrLeuIleMetGlnIleValPheAsnValArgThrA : 60 . !:!!!:!|||:!!:!!:!!! !.!! ... :!!|||!.!:!!..!|||! tGlyValAsnPheMetValSerGlnPheGlySer---MetPheThrIleGluThrV 3179735 : GGGTGTTAATTTCATGGTTTCGCAATTTGGCAGC---ATGTTCACCATAGAAACCG : 3179788 61 : laAspGluLeuSerGluAsnPheGlyIleThrIleThrValPheThrThrIleCys : 78 .!.!.!!:!!! !!!: ! ! !||| !:!!:!!||||||..! ! !||| alGlnAspPheValAspLeuThrTyrIleCysValSerValPheValGlyCysCys 3179789 : TACAAGATTTCGTCGACCTTACTTACATATGCGTCTCCGTGTTCGTCGGTTGTTGC : 3179842 79 : LysPheIleAsnLeuLeuPheArgArgGlyIleIleIleSerLeuLeuAspLeuLe : 97 |||.!. !|||:!!:!!||| !||| ! !||||||..!|||:!!:!!:!!!! LysLeuSerAsnValValPheTyrArgLysAspIleIleAspLeuMetAsnIlePh 3179843 : AAGCTGTCAAACGTGGTGTTCTATCGGAAAGATATCATAGACCTGATGAACATCTT : 3179899 98 : uGlnLysGluProPheLeuProMetAspIleGluGluIleLysIleHisThrLysT : 116 !..!:!!!!:|||! ! ! ! !:!!! |||||| !:!!:!:!!..!!!:!| eMetGluAspProCysAlaCysSerAsnLysGluGluAspGlnValGlnAlaArgT 3179900 : CATGGAGGATCCTTGTGCATGTTCGAACAAGGAGGAGGACCAGGTGCAAGCGAGAT : 3179956 117 : yrAsnLysLeuIleGluLysVal : 123 ||:!! ! ! !:!!..!..!||| yrAspAspGlnLeuArgSerVal 3179957 : ACGACGATCAATTACGGTCAGTA : 3179979 vulgar: AmOr72 22 123 . KQ414646.1 3179679 3179979 + 118 M 30 90 G 1 0 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3179680 3179979 118 + . gene_id 9 ; sequence AmOr72 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3179680 3179979 . + . KQ414646.1 exonerate:protein2genome:local exon 3179680 3179979 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3179680 3179979 118 + . alignment_id 9 ; Query AmOr72 ; Align 3179680 23 90 ; Align 3179770 54 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr72 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 302 -> 365 Target range: 3156085 -> 3156274 303 : SerLeuGluIleProAspMetIlePheAsnSerAsnTrpProAsnLeuSerAsnGl : 321 |||||||||||| !!:!!|||||||||:!! !:!!||| !! !!!..!!!.! SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 3156086 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 3156140 322 : uAlaLysLysIleLeuLeuIleIleMetAlaArgSerLeuThrProValGluValV : 340 .!!|||::!! !:!!|||! !!!:||| !|||:!!! !:!!|||:!!|||:!!: aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 3156141 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 3156197 341 : alSerAlaHisIleIleProLeuAsnLeuGluSerPheLysArgLeuIleLysAla : 358 !!|||!.!!.!:!::!! !!:!!||||||!!:|||||| !:!!! !! leSerValArgValLeuSerValAsnLeuAspSerPheValAlaValSerIleAsp 3156198 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTGTCAGTATtgat : 3156251 359 : ThrTyrSerAlaTyrAsnMet : 365 |||... |||::: LysTyrGlnLysThrAsnIle 3156252 : aaatatcaaaaaactaatatt : 3156274 vulgar: AmOr72 302 365 . KQ414646.1 3156085 3156274 + 111 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3156086 3156274 111 + . gene_id 10 ; sequence AmOr72 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3156086 3156274 . + . KQ414646.1 exonerate:protein2genome:local exon 3156086 3156274 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3156086 3156274 111 + . alignment_id 10 ; Query AmOr72 ; Align 3156086 303 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr72 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 301 -> 352 Target range: 3178743 -> 3178896 302 : LysSerLeuGluIleProAspMetIlePheAsnSerAsnTrpProAsnLeuSerAs : 320 :!!||| !:!!:!! !!!: |||!:!.!.! !:!!||| !! ||| !!!. GlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuProTh 3178744 : CAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCCCAC : 3178798 321 : nGluAlaLysLysIleLeuLeuIleIleMetAlaArgSerLeuThrProValGluV : 339 !!!: !!:!||| !||||||:!:||||||||||||||| ! !||||||:!!: rAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValLysM 3178799 : CGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTAAAA : 3178855 340 : alValSerAlaHisIleIleProLeuAsnLeuGluSerPhe : 352 !!..!|||!.!|||:!!:!! !|||::! !||||||||| etThrSerGlyHisValValValLeuSerAlaGluSerPhe 3178856 : TGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTT : 3178896 vulgar: AmOr72 301 352 . KQ414646.1 3178743 3178896 + 105 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178744 3178896 105 + . gene_id 11 ; sequence AmOr72 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178744 3178896 . + . KQ414646.1 exonerate:protein2genome:local exon 3178744 3178896 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178744 3178896 105 + . alignment_id 11 ; Query AmOr72 ; Align 3178744 302 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr73 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 227 -> 301 Target range: 1946248 -> 1946029 228 : PheAlaGluThrValAsnThrValPheGlnTyrMetIlePheLeuGlnPheThrIl : 246 |||:!!:!!! !|||||| !! !|||:!! !!::!:.!!! !|||||| !|| PheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIl 1946248 : TTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCAT : 1946194 247 : eSerSerValValLeuCysLeuSerIleTyrLysPheSerThrValAspProLeuS : 265 ||||! ! !|||:!!|||!!!!:!:!!|||::!.!.!!! !:!! !:!!. eSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIle---LysMetA 1946193 : AAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATC---AAAATGG : 1946140 266 : erMetAsnPheValTrpSerGlyPheTyrLeuCysCysMetLeuMetGlnValTyr : 283 .. ...|||||| !.!!|||! !! !|||! :!!! !|||:!!!:! spThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePhe 1946139 : AcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTT : 1946086 284 : LeuTyrCysTrpPheGlyAsnGluValThrLeuLysSerAsnLysValSerAsp : 301 ! !|||||||||!:!||||||||||||! ! !||| !:!! ! ! ||| TyrTyrCysTrpTyrGlyAsnGluValLysAspLysValAspHisCysHisAsp 1946085 : TACTATTGCTGGTACGGCAACGAAGTGAAAGATAAGGTTGATCATTGTcacgat : 1946030 vulgar: AmOr73 227 301 . KQ414661.1 1946248 1946029 - 124 M 34 102 G 1 0 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946030 1946248 124 - . gene_id 1 ; sequence AmOr73 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946030 1946248 . - . KQ414661.1 exonerate:protein2genome:local exon 1946030 1946248 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946030 1946248 124 - . alignment_id 1 ; Query AmOr73 ; Align 1946249 228 102 ; Align 1946147 263 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr73 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 0 -> 127 Target range: 1947382 -> 1947001 1 : MetHisLysLeuSerLeuSerPheAlaLeuLeuThrTyrGlyGlyTyrTrpArgPr : 19 ||| ! !|||!.!! !!!!! !||||||! ! !..!|||! !!::! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 1947382 : ATGAGCGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTATCTGCC : 1947328 20 : oThrLysTrpProAlaSerSerTyrLysTyrHisLeuTyrAsnIleTyrSerAlaP : 38 | !..!||| .!!!!! !!!:!:!! !|||||||||||||||.!!!..| oHisSerTrp---ThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValP 1947327 : CCATTCGTGG---ACAACACCGTTCGAAAGGTCTTTGTACAATATCTACGGGGtgt : 1947274 39 : heMetIlePheLeuLeuTyrPheIleThrPheCysThrCysValAspSerLeuIle : 56 || ......|||||| ! !:!!..!.!!! ! :!!||| ! !||| heSerPheLeuLeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIle 1947273 : tctcctttcttcttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATC : 1947220 57 : Ser<->LysAsnLeuLysThrMetSerGluLysPheSerLeuCysIleSerValPh : 74 !:! :!!!:!! ! ! !.!.|||:::...||||||::: ! ! !||||| AsnValGluSerGlnAspAspPheSerAspAsnPheSerValThrAlaValValPh 1947219 : AACGTGGAGAGCCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTT : 1947163 75 : eGlyValSerLeuLysValAlaAsnLeuPheLeuGlnArgGlyLysIleIleAsnI : 93 | !..!!!!!!!|||:!!:!!! !|||.!!:!!!:!||||||!!..!!||| !: eLeuThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheL 1947162 : TCTCACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTC : 1947106 94 : leMetAsnSerLeuThrLysGluAsnSerIleProArgAspGluGlnGluGluIle : 111 !:!!::!!!!!||| !!!.:!! ! ! !||| !||| !:!!|||.!. euIleAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGlu 1947105 : TGATCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAG : 1947052 112 : IleGlnArgArgAsnAspAsnTyrAlaArgLysValThrIleTyrCys : 127 |||::! !!:! !!!:!!. !.!!..! !!||| !:!!! ||| IleArgAlaLysPheGluLysIleThrGlu***Val***ValSerCys 1947051 : ATTAGAGCGAAATTCGAGAAGATCACCGAGTAAGTTTGAGTATCATGT : 1947002 vulgar: AmOr73 0 127 . KQ414661.1 1947382 1947001 - 101 M 22 66 G 1 0 M 34 102 G 0 3 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1947002 1947382 101 - . gene_id 2 ; sequence AmOr73 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1947002 1947382 . - . KQ414661.1 exonerate:protein2genome:local exon 1947002 1947382 . - . insertions 3 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1947002 1947382 101 - . alignment_id 2 ; Query AmOr73 ; Align 1947383 1 66 ; Align 1947317 24 102 ; Align 1947212 58 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr72 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 490 Query range: 141 -> 370 Target range: 1946852 -> 1945689 142 : ThrLeuIleThrAspPheLysLysLysLysLeuThrPheGluAlaTrpIleProPh : 160 :!!|||:!:! !||||||!..!!.!:!||||||! !|||..!||||||||||||!: SerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTy 1946852 : TCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTA : 1946798 161 : eAsnTyrThrAlaSerTrpPheLeuPheSerLeuThrPheIleHisGlnCysGlyC : 179 !:!!|||:!! !!:!! !:!!|||! !|||||||||:!!||||||..! !. rAspTyrSerProAla---ProIlePheIleLeuThrPheValHisGlnAlaIleA 1946797 : CGATTACTCCCCTGCG---CCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAG : 1946744 180 : ysAlaValValThrSerPheGlyIleSerIlePheAspThrLeuPheAlaGlyLeu : 197 .!|||..!:!! !!!! !..!! ! !! ! ! |||:!!|||!:!.!!|||||| laAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeu 1946743 : CCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTG : 1946690 198 : LeuLeuGlnValCysCysGlnLeuAspThrLeuValTyrArgLeuGlnAsnIleLy : 216 |||:!!.!.:!!! !||||||!!!!!:! !|||! !:!!||||||::!|||:!!|| LeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLy 1946689 : TTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAA : 1946633 217 : sGluAspAlaIleGlnSerLeuLysTyrCysAlaArgGlnHisGluLeuIleTyr{ : 235 | !!: ! !.!.|||:!!||| ! ||||||!:!!!.|||!!:! !||||||{ sThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIleTyr{ 1946632 : AACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTATATAC{ : 1946576 236 : Ar} >>>> Target Intron 1 >>>> {g}PheThrGluLeuMetAsnLys : 242 !:} 325 bp {!}|||:!!:!! !:!!|||:!! Gl}++ ++{n}PheSerLysLysValAsnGlu 1946575 : CA}gt.........................ag{A}TTTTCGAAAAAGGTGAACGAA : 1946230 243 : LeuPheSerSerIleLeuCysLeuGlnPheLeuIleSerAlaValAlaIleCysPh : 261 !|||!.! !|||||| !! !||||||! !|||||| ! !!.!|||||||| GluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIleCysPh 1946229 : GAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTT : 1946173 262 : eSerValTyrArgValIleTyrThrLysThrAspSerGlnPheAlaGlyAlaIleI : 280 |!:!:!!||||||:!!! ! ! ! !|||! !|||::::::|||... |||: eAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIleIleL 1946172 : CAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaatcaTAC : 1946116 281 : lePheValPheSerAlaLeuIleGlnIlePheTyrPheCysTrpHisGlyAspIle : 298 !!!:! !|||!!!.!!:!!! ||||||||||||!:!||||||:!!|||:!! ! euTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGlu 1946115 : TCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGGCAACGAA : 1946062 299 : AlaLysTyrLys >>>> Target Intron 2 >>>> SerLeuGluIlePro : 307 !.!||| !!||| 80 bp ||||||:!!:!!||| ValLysAspLys++ ++SerLeuGlnLeuPro 1946061 : GTGAAAGATAAGgt.........................agAGCCTCCAACTTCCA : 1945955 308 : AspMetIlePheAsnSerAsnTrpProAsnLeuSerAsnGluAlaLysLysIleLe : 326 !!|||||||||:!!|||:!!||| !!::!|||!:!|||.!.!.!! !:! !|| TyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArgAlaLe 1945954 : TACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGAGCACT : 1945898 327 : uLeuIleIleMetAlaArgSerLeuThrProValGluValValSerAlaHisIleI : 345 |||||||!!:||| !|||:!!:!!! !|||:!!||| !!..!||| !|||:!!: uLeuIleMetMetArgArgAlaValArgProIleGluPheThrSerIleHisValV 1945897 : TTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCACGTTG : 1945841 346 : leProLeuAsnLeuGluSerPheLysArg >>>> Target Intron 3 >>>> : 355 !! !!:!!|||||||||||||||! ! ! 74 bp alSerValAsnLeuGluSerPheMetAla++ 1945840 : TCTCTGTGAATCTCGAATCCTTCATGGCAgt......................... : 1945809 356 : LeuIleLysAlaThrTyrSerAlaTyrAsnMetLeuGlnGlnThrLys : 370 :!!||||||.!!:!!|||||||||!:!||||||:!!||||||!:!||| ++ValIleLysThrSerTyrSerAlaPheAsnMetIleGlnGlnSerLys 1945808 : agGTAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAACAAAGCAAA : 1945690 vulgar: AmOr72 141 370 . KQ414661.1 1946852 1945689 - 490 M 24 72 G 1 0 M 68 204 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 67 201 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945690 1946852 490 - . gene_id 1 ; sequence AmOr72 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1946575 1946852 . - . KQ414661.1 exonerate:protein2genome:local exon 1946575 1946852 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local splice5 1946573 1946574 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946250 1946574 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1946250 1946251 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946048 1946249 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946249 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946046 1946047 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945968 1946047 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1945968 1945969 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945812 1945967 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1945967 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 3 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 3 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 2 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945690 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945690 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945690 1946852 490 - . alignment_id 1 ; Query AmOr72 ; Align 1946853 142 72 ; Align 1946781 167 204 ; Align 1946249 236 201 ; Align 1945968 303 156 ; Align 1945738 355 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr72 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 302 -> 368 Target range: 1948618 -> 1948287 303 : SerLeuGluIleProAspMetIlePheAsnSerAsnTrpProAsnLeuSerAsnGl : 321 |||||||||||| !!:!!|||||||||:!! !:!!||| !! !!!..!!!.! SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 1948618 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 1948564 322 : uAlaLysLysIleLeuLeuIleIleMetAlaArgSerLeuThrProValGluValV : 340 .!!|||::!! !:!!|||! !!!:||| !|||:!!! !:!!|||:!!|||:!!: aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 1948563 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 1948507 341 : alSerAlaHisIleIleProLeuAsnLeuGluSerPheLysArg >>>> Targe : 355 !!|||!.!!.!:!::!! !!:!!||||||!!:|||||| ! leSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 1948506 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.......... : 1948460 356 : t Intron 1 >>>> LeuIleLysAlaThrTyrSerAlaTyrAsnMetLeuGln : 367 133 bp |||:!:|||.!!:!!|||||||||||||||:!:|||||| ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGln 1948459 : ...............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAA : 1948293 368 : Gln : 368 !:: Arg 1948292 : CGC : 1948288 vulgar: AmOr72 302 368 . KQ414661.1 1948618 1948287 - 135 M 52 156 5 0 2 I 0 129 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948288 1948618 135 - . gene_id 2 ; sequence AmOr72 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1948463 1948618 . - . KQ414661.1 exonerate:protein2genome:local exon 1948463 1948618 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1948461 1948462 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1948330 1948462 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1948330 1948331 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1948288 1948329 . - . KQ414661.1 exonerate:protein2genome:local exon 1948288 1948329 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948288 1948618 135 - . alignment_id 2 ; Query AmOr72 ; Align 1948619 303 156 ; Align 1948330 355 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr68 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 272 Query range: 123 -> 305 Target range: 1946906 -> 1946047 124 : ThrIleTyrTyrThrValMetValGluPheThrValPheCysMetIleValSerSe : 142 |||||| !||| ! :::::: ...:::..!|||! !!!: !|||!!!|| ThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrValArgSe 1946906 : ACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATATACGTGAGATC : 1946852 143 : rLeuValThrAspPheArgAsnGlnArgLeuAlaTyrGluAlaTrpLeuProPheA : 161 ||||:!!! !||||||!!!|||::!!:!||| !!:!..!||||||:!!|||!:!: rLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrA 1946851 : GCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACG : 1946795 162 : snCysSerAlaProAsnTyrTyrTyrTyrTyrIleAlaTyrValHisGlnIleIle : 179 !!! !||| !! !! ! !!:! !:!!.!!!:!||||||||| !||| spTyrSerProAlaPro------IlePheIleLeuThrPheValHisGlnAlaIle 1946794 : ATTACTCCCCTGCGCCC------ATTTTTATCCTTACCTTCGTCCATCAAGCTATA : 1946747 180 : AlaLeuIleGlyThrSerLeuLeuAsnValAlaCysAspValThrIleCysGlyLe : 198 ||| !! ! !!!! !! !!:!|||.!! ||| ! ! ! !||||| AlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLe 1946746 : GCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTT : 1946690 199 : uPheValHisMetTyrSerGlnGlnGluIleLeuLysHisArgLeuLysGluSerV : 217 |!!.:!!:!!!!:|||!!!||| |||||||||:!!|||||||||!:! !:!| uLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArg---AsnV 1946689 : GTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGG---AACG : 1946636 218 : alAsnValGluAsnArgLeuAsnIleGlyLysIleValTyrPheHisAsnTyrLeu : 235 ||!!...!|||.!. ! !::!:!: !:!! !!.! ! !|||:!! !:!! alLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIle 1946635 : TTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTATA : 1946582 236 : Tyr{Gl} >>>> Target Intron 1 >>>> {y}TyrAlaPheMetValGl : 243 |||{ } 325 bp {!}!:!:!! ! !|||.! Tyr{Gl}++ ++{n}PheSerLysLysValAs 1946581 : TAC{CA}gt.........................ag{A}TTTTCGAAAAAGGTGAA : 1946233 244 : nGluLysPheLysLysIleIleGlyIleGlnLeuLeuSerSerThrLeuValValC : 262 .|||:!!|||||| !|||:!: ! !|||!!!! !! !|||! !! !|||:!!| nGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIleC 1946232 : CGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCT : 1946176 263 : ysPheIleLeuTyrLysLeuAlaAsnThrSerLeuIleSerThrLysPheLeuGlu : 280 |||||! !||||||::!:!!.!!.!.! !!.!:!! ...|||||||||:::||| ysPheAsnLeuTyrArgMetThrGlnIleLysMet---AspThrLysPheValGlu 1946175 : GCTTCAATCTTTACCGAATGACACAGATCAAAATG---GAcacgaaattcgtcgaa : 1946125 281 : PheValLeuTyrLeuAlaCysMetMetThrGlnIlePheValTyrCysTrpTyrGl : 299 ...:!!||||||! ! !|||! !!:|||||||||||| !|||||||||||||| IleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGl 1946124 : atcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGG : 1946068 300 : yAsnGlnLeuLysLeuLys : 305 ||||:!!:!!||| !||| yAsnGluValLysAspLys 1946067 : CAACGAAGTGAAAGATAAG : 1946048 vulgar: AmOr68 123 305 . KQ414661.1 1946906 1946047 - 272 M 43 129 G 2 0 M 46 138 G 1 0 M 21 63 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 36 108 G 1 0 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946048 1946906 272 - . gene_id 1 ; sequence AmOr68 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1946575 1946906 . - . KQ414661.1 exonerate:protein2genome:local exon 1946575 1946906 . - . insertions 0 ; deletions 3 KQ414661.1 exonerate:protein2genome:local splice5 1946573 1946574 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946250 1946574 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1946250 1946251 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946048 1946249 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946249 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946048 1946906 272 - . alignment_id 1 ; Query AmOr68 ; Align 1946907 124 129 ; Align 1946778 169 138 ; Align 1946640 216 63 ; Align 1946249 238 108 ; Align 1946141 275 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr71 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1089 Query range: 0 -> 371 Target range: 1947382 -> 1945683 1 : MetArgIleLeuArgTrpThrPheLeuLeuPheAlaLeuCysGlyCysPheProPr : 19 |||!!!:!!|||!:!! |||! ||||||.!! !:!!! !||||||!:!! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 1947382 : ATGAGCGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTATCTGCC : 1947328 20 : oSerSerTrpThrThrArgLeuLysArgTyrLeuTyrLysIleTyrAlaValPheS : 38 | !||||||||||||! !!!!:!!|||! !||||||!!.||||||!.!||||||| oHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheS 1947327 : CCATTCGTGGACAACACCGTTCGAAAGGTCTTTGTACAATATCTACGGGGtgttct : 1947271 39 : erPheValAlaLeuAsnSerPheLeuLeuSerGlnIleLeuAspMetValTyrAsn : 56 |||||::: |||::!|||.!!:!!||||||||||||||||||:!:!.! !||| erPheLeuLeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIleAsn 1947270 : cctttcttcttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCAAC : 1947217 57 : ValLysGlyThrAspAspPheSerAspAsnPheSerValThrValValValPheVa : 75 |||:!!.!! !||||||||||||||||||||||||||||||!.!|||||||||:! ValGluSerGlnAspAspPheSerAspAsnPheSerValThrAlaValValPheLe 1947216 : GTGGAGAGCCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTTCT : 1947160 76 : lThrCysPheLysLeuIleThrIleLeuThrArgArgGluAsnIleLeuLeuLeuC : 94 !|||!! ||||||||| !! !:!!|||! !||||||! !|||.!!:!!!!!||| uThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuI 1947159 : CACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGA : 1947103 95 : ysAsnThrLeuLysGlnGluProLeuSerProIleAsnThrGluGluPheGluIle : 112 !:!!||||||:!!.!.:!!|||!!!||||||:!::!!||||||||| !|||||| leAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIle 1947102 : TCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATT : 1947049 113 : PheLeuLysPheGluLysLeuThr{As} >>>> Target Intron 1 >>>> : 121 !||||||||||||:!!|||{!!} 107 bp ArgAlaLysPheGluLysIleThr{Gl}++ + 1947048 : AGAGCGAAATTCGAGAAGATCACC{GA}gt.........................a : 1946915 122 : {p}TrpAsnThrLeuGlyTyrPheIleLeuLeuMetSerSerSerLeuCysIleL : 139 {:}|||||||||:!!||||||!::! ||||||::: |||::!!!!! !|||! +{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleT 1946914 : g{A}TGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATAT : 1946861 140 : euMetGlySerLeuLeuAlaAsnPheLysIleArgLysLeuAlaPheArgThrTrp : 157 !:!! !!||||||||| !:!!|||!..! !||||||||| !||||||.!!||| yrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrp 1946860 : ACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGG : 1946807 158 : LeuProTyrAspTyrSerThrAlaSerAlaPheLeuLeuAlaPheAlaTyrGlnVa : 176 :!!||||||||||||||| !!||| !! !|||:!!|||.!!|||!.!:!!|||!. IleProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAl 1946806 : ATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGC : 1946750 177 : lValValAlaThrValCysThrPheAlaCysValAlaSerAspThrLeuTyrSerG : 195 !:!!!.!||||||:!!||| ! !:!! !!|||.!! !|||:!!||||||!!!| aIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrG 1946749 : TATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTG : 1946693 196 : lyLeuLeuIleHisIleSerCysGlnPheGluIleLeuGluHisArgLeuLysAsn : 213 |||||||||||:!!|||! !||||||||||||||||||||||||||||||!:!||| lyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsn 1946692 : GCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAAC : 1946639 214 : IleGlySerAspLysAsnTyrThrMetLysGlnCysValArgHisHisAsnHisIl : 232 :!! !!!!!!::!!:!! !!:!!:!!|||||||||!.!!:!||||||:!!!.!|| ValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIl 1946638 : GTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTAT : 1946582 233 : eTyr{Ly} >>>> Target Intron 2 >>>> {s}TyrGlyGluMetValA : 240 ||||{:!} 325 bp {!}!:!..!:!!! !|||| eTyr{Gl}++ ++{n}PheSerLysLysValA 1946581 : ATAC{CA}gt.........................ag{A}TTTTCGAAAAAGGTGA : 1946233 241 : snAspAlaPheGlnSerIleMetPhePheGlnPheCysThrSerLeuSerMetIle : 258 ||!!:! !|||:!! !|||:!!.!!! !|||||||||! !|||:!!|||:!!||| snGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIle 1946232 : ACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATC : 1946179 259 : CysPheAsnPheTyrArgIleMetGlnIleGluMetAspSerArgTyrValGlyTh : 277 |||||||||.!!||||||!!:! ||||||:!!||||||:::::::::||| CysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIl 1946178 : TGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaat : 1946122 278 : rIleLeuTyrMetValCysSerLeuMetGlnIlePheTyrTyrCysTrpPheSerA : 296 ||||||||| !!|||!!!:!!! !|||||||||||||||||||||!:!.!!| eIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyA 1946121 : caTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGGCA : 1946065 297 : snGluValLysLeuLys >>>> Target Intron 3 >>>> SerLeuGluL : 305 ||||||||||| !||| 80 bp ||||||:!!| snGluValLysAspLys++ ++SerLeuGlnL 1946064 : ACGAAGTGAAAGATAAGgt.........................agAGCCTCCAAC : 1945958 306 : euSerAspMetIlePheArgSerAsnTrpThrSerLeuAsnAsnAsnValGlnArg : 323 || !! !!|||||||||!.!|||:!!|||||||||||||||||||||||| ||| euProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArg 1945957 : TTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGA : 1945904 324 : AlaIleLeuLeuValMetArgArgSerMetLysProIleGluPheThrSerIleTy : 342 |||:!!|||:!!:!!|||||||||:!!:!!!:!|||||||||||||||||||||:! AlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheThrSerIleHi 1945903 : GCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCA : 1945847 343 : rIleValSerValAsnLeuAspSerPheMetThr >>>> Target Intron 4 : 354 !:!!|||||||||||||||!!:|||||||||.!! 74 bp sValValSerValAsnLeuGluSerPheMetAla++ 1945846 : CGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt.................... : 1945809 355 : >>>> LeuLeuLysSerSerTyrSerAlaPheSerValLeuGlnGlnSerArgG : 370 :!!:!!|||!!!|||||||||||||||!:!:!!:!!|||||||||!:!: ++ValIleLysThrSerTyrSerAlaPheAsnMetIleGlnGlnSerLysG 1945808 : .....agGTAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAACAAAGCAAAC : 1945689 371 : luSer : 371 !!||| lnSer 1945688 : AATCG : 1945684 vulgar: AmOr71 0 371 . KQ414661.1 1947382 1945683 - 1089 M 120 360 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 112 336 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 67 201 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945684 1947382 1089 - . gene_id 1 ; sequence AmOr71 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1947021 1947382 . - . KQ414661.1 exonerate:protein2genome:local exon 1947021 1947382 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1947019 1947020 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946914 1947020 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1946914 1946915 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946575 1946913 . - . KQ414661.1 exonerate:protein2genome:local exon 1946575 1946913 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946573 1946574 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946250 1946574 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1946250 1946251 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946048 1946249 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946249 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946046 1946047 . - . intron_id 3 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945968 1946047 . - . intron_id 3 KQ414661.1 exonerate:protein2genome:local splice3 1945968 1945969 . - . intron_id 2 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945812 1945967 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1945967 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 4 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 4 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 3 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945684 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945684 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945684 1947382 1089 - . alignment_id 1 ; Query AmOr71 ; Align 1947383 1 360 ; Align 1946913 122 336 ; Align 1946249 235 201 ; Align 1945968 302 156 ; Align 1945738 354 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr71 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 156 Query range: 301 -> 367 Target range: 1948618 -> 1948287 302 : SerLeuGluLeuSerAspMetIlePheArgSerAsnTrpThrSerLeuAsnAsnAs : 320 |||||||||:!!|||:!!|||||||||!.! !:!!|||||| !!!!!:!!!!. SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 1948618 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 1948564 321 : nValGlnArgAlaIleLeuLeuValMetArgArgSerMetLysProIleGluPheT : 339 !..!:!!||| !|||||| !:!!|||! !|||:!! !..!|||||||||.!!! aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 1948563 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 1948507 340 : hrSerIleTyrIleValSerValAsnLeuAspSerPheMetThr >>>> Targe : 354 !|||:!! !:!::!!|||||||||||||||||||||:!:.!! leSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 1948506 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.......... : 1948460 355 : t Intron 1 >>>> LeuLeuLysSerSerTyrSerAlaPheSerValLeuGln : 366 133 bp |||||||||!!!||||||||||||!:!!:!||||||||| ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGln 1948459 : ...............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAA : 1948293 367 : Gln : 367 !:: Arg 1948292 : CGC : 1948288 vulgar: AmOr71 301 367 . KQ414661.1 1948618 1948287 - 156 M 52 156 5 0 2 I 0 129 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948288 1948618 156 - . gene_id 2 ; sequence AmOr71 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1948463 1948618 . - . KQ414661.1 exonerate:protein2genome:local exon 1948463 1948618 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1948461 1948462 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1948330 1948462 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1948330 1948331 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1948288 1948329 . - . KQ414661.1 exonerate:protein2genome:local exon 1948288 1948329 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948288 1948618 156 - . alignment_id 2 ; Query AmOr71 ; Align 1948619 302 156 ; Align 1948330 354 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr63 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 298 -> 394 Target range: 1387453 -> 1387955 299 : MetIleValLysThrPheAlaValIleCysValLeuLeuIleGlnLeuPheAlaTy : 317 :!:|||:!!||| !||| !! ! ! !!.!:!! ! !:!! !||| !! LeuIleLeuLysCysPheProTyrTyrValAlaValAsnCysGluAlaPheIleLe 1387454 : TTAATACTGAAATGTTTTCCCTATTACGTTGCTGTTAATTGTGAAGCATTCATTTT : 1387508 318 : rSerTyrValGlyGluTyrLeuLysThrGln >>>> Target Intron 1 >> : 328 !!!|||..!||||||||||||! :!!:!! 79 bp uCysTyrThrGlyGluTyrLeuThrSerLys++ 1387509 : ATGTTATACCGGAGAATATCTAACCTCTAAGgt....................... : 1387543 329 : >> ThrGluGlyLeuGlyAsnSerIleTyrPheCysThrTrpTyrAspMetProL : 345 :::||| !!:!! !.!.|||:::||| |||||||||:!: ! ++SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysP 1387544 : ..agagtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAAC : 1387671 346 : ysAsnValSerHisAsnIleThrPheIleIleMetArgAlaGlnHisProValLeu : 363 ...! !:!!!.. ::: ...||||||:::|||:!!||| ! !:!!:!! roArgGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIle 1387672 : CTCGAGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATA : 1387725 364 : LeuThrAlaGlyLysPhePheValIleAsnMetGluThrTyrMetSer >>>> T : 380 |||||||||||||||||| ! !:!!::!:!!! .!!!:! !:: LeuThrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387726 : CTCACTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt...... : 1387778 381 : arget Intron 2 >>>> IleLeuArgIleSerMetSerTyrLeuSerValLe : 391 135 bp :::|||!:! !||| ||||||:!!|||||||| ++MetLeuLysAlaSerAlaSerTyrValSerValLe 1387779 : ...................agatgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTT : 1387944 392 : uArgValMet : 394 |!.!!.!||| uHisAlaMet 1387945 : GCATGCAATG : 1387955 vulgar: AmOr63 298 394 . KQ414716.1 1387453 1387955 + 154 M 29 87 5 0 2 I 0 75 3 0 2 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387454 1387955 154 + . gene_id 1 ; sequence AmOr63 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387454 1387540 . + . KQ414716.1 exonerate:protein2genome:local exon 1387454 1387540 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387541 1387542 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387541 1387619 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387618 1387619 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 2 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 1 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387454 1387955 154 + . alignment_id 1 ; Query AmOr63 ; Align 1387454 299 87 ; Align 1387620 328 156 ; Align 1387911 380 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr63 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 216 -> 380 Target range: 1394161 -> 1395482 217 : ValPheHisLeuCysGlyGlnValGluIleLeuArgLeuGluTyrAsnLysLeuSe : 235 :!!||||||:!! ! ||||||:!!|||!!:|||!:! !! ......:::|| IlePheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAsnIleSe 1394162 : ATATTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaatatttc : 1394216 236 : r<-><->AsnGluAsnGluArgThrThrLysHisIleThr<->LeuLeuIleLysA : 251 | :!!|||!!..!.||| !:!!!:!:!!! !||| ! !|||||| ! | rIleLysAspGluLysHisArgLeuSerArgAsnThrThrLysSerLeuIleHisA 1394217 : tattaaagATGAGAAACACAGATTATCGAGAAACACCACCAAATCATTAATTCACA : 1394273 252 : rgHisIleTyrLeuLeuLysLeuGlyAspMetLeuAsnLysThrIleSerSerIle : 269 ||||| ! :!!:!!! !..!||| :!!.!.!.. !.!!|||! !||| rgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIle 1394274 : GACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACATT : 1394327 270 : LeuIleValGlnLeuSerSerSerCysMetLeuIleCysThrThrGlyPheGluPh : 288 !:!::!!|||! !! !!!!!:! :!::!!|||||| !! !|||||| !.! AlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGlyPheLeuIl 1394328 : GCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGATTCTTAAT : 1394384 289 : eIleLeuAlaLeuSerIleGlyAsnIleValMetIleValLysThr<->PheAlaV : 306 .:!!:!!!.! :::||| ... :::...|||... ||| eValIleValSerAsnIleTyrGluTyrTyrIlePheValAsnPhe***PheLysP 1394385 : AGTAATTGTAAGtaatatttacgaatattacattttcgttaatttttaatttaagt : 1394441 307 : alIleCysValLeuLeuIleGlnLeuPheAlaTyrSerTyrValGlyGluTyrLeu : 324 ! !:!!:!!||| ! !|||.!! :::|||::: he***PheIleIleLeuCysLeuLeuIleProIleAsnTyrIleIleIleLeuThr 1394442 : tttaGTTTATAATTCTCTGCTTACTGATTCcaataaattacattattattttaact : 1394495 325 : <->LysThrGlnThrGluGlyLeuGlyAsnSer{I} >>>> Target Intron : 335 ||| ... |||:::{ } 814 bp ***LysIleLeuIleValLysPheHisAsnThr{A}++ 1394496 : taaaaaatattaatagtgaaatttcataatact{G}gt.................. : 1394534 336 : 1 >>>> {le}TyrPheCysThrTrpTyrAspMetProLysAsnValSerHisA : 350 { !}||| !! !!|||||| !:!! ! .!.! !!!!|||! ++{la}TyrSerSerProTrpTyrLeuLeuAspProGlnAspArgHisI 1394535 : .......ag{CA}TATAGCTCACCTTGGTACCTTCTGGATCCTCAAGACAGACATA : 1395390 351 : snIleThrPheIleIleMetArgAlaGlnHisProValLeuLeuThrAlaGlyLys : 368 !|||! !.!!:!!!!:!!:|||:!!|||...! !:!! !:!!|||||||||||| leIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleThrAlaGlyLys 1395391 : TCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCACCGCTGGAAAA : 1395444 369 : PhePheValIleAsnMetGluThrTyrMetSerIle : 380 |||.!.! !:!:::!:!:||| !!:! !:!:!! PheMetAspLeuSerLeuGluGlyPheAlaAsnVal 1395445 : TTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTA : 1395482 vulgar: AmOr63 216 380 . KQ414716.1 1394161 1395482 + 100 M 19 57 G 0 6 M 11 33 G 0 3 M 57 171 G 0 3 M 21 63 G 0 3 M 10 30 S 0 1 5 0 2 I 0 810 3 0 2 S 1 2 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394162 1395482 100 + . gene_id 2 ; sequence AmOr63 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394162 1394531 . + . KQ414716.1 exonerate:protein2genome:local exon 1394162 1394531 . + . insertions 15 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394532 1394533 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394532 1395345 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1395344 1395345 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1395346 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395346 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394162 1395482 100 + . alignment_id 2 ; Query AmOr63 ; Align 1394162 217 57 ; Align 1394225 236 33 ; Align 1394261 247 171 ; Align 1394435 304 63 ; Align 1394501 325 30 ; Align 1395348 336 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr63 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 330 -> 395 Target range: 1345573 -> 1345846 331 : LeuGlyAsnSerIleTyrPheCysThrTrpTyrAspMetProLysAsnValSerHi : 349 :!! !.!.:!! !|||||| !!!.!|||||||||:!:||| ! !!. !!!!!. MetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLysTyrThrAr 1345574 : ATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAAATACACGCG : 1345628 350 : sAsnIleThrPheIleIleMetArgAlaGlnHisProValLeuLeuThrAlaGlyL : 368 .::::!!! !||| !||| |||:!!||| ! ||| !! !||||||||||||| gSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuThrAlaGlyL 1345629 : ATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAGCTGGCA : 1345685 369 : ysPhePheValIleAsnMetGluThrTyrMetSer >>>> Target Intron : 380 |||||!:!|||.!!::::!:||||||!:! ! ! 78 bp ysPheTyrValPheSerLeuGluThrPheGlyIle++ 1345686 : AGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCgt................... : 1345723 381 : 1 >>>> IleLeuArgIleSerMetSerTyrLeuSerValLeuArgValMetVal : 395 |||:!!!:! ||||||:!!|||||||||||||||!:! !!!::!! ++IleValLysAlaSerMetAlaTyrLeuSerValLeuLysSerIleIle 1345724 : ......agATAGTAAAAGCGTCGATGGCCTATCTTTCCGTTCTGAAAAGCATTATC : 1345844 vulgar: AmOr63 330 395 . KQ414782.1 1345573 1345846 + 149 M 49 147 5 0 2 I 0 74 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345574 1345846 149 + . gene_id 1 ; sequence AmOr63 ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345574 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345574 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345846 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345846 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345574 1345846 149 + . alignment_id 1 ; Query AmOr63 ; Align 1345574 331 147 ; Align 1345799 380 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr63 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 317 -> 394 Target range: 39935 -> 40244 318 : SerTyrValGlyGluTyrLeuLysThrGlnThrGluGlyLeuGlyAsnSerIleTyrPhe : 337 !!:|||::: ::: ... ::! |||:!!|||.!.||| !||| ! ThrTyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAsp 39936 : ACttacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGAC : 39993 338 : CysThrTrpTyrAspMetProLysAsnValSerHisAsnIleThrPheIleIleMetArg : 357 |||!.!|||||||||:!:||| !!!. !:!! !::::!!..!.!!:!:||| ||| CysAsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArg 39994 : TGTAACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGC : 40053 358 : AlaGlnHisProValLeuLeuThrAlaGlyLysPhePheValIleAsnMetGluThrTyr : 377 |||||| !! !!! !:!!||||||||||||||| ! !.!!::!:!:||| !!:! AlaGlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPhe 40054 : GCGCAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTT : 40113 378 : MetSer >>>> Target Intron 1 >>>> IleLeuArgIleSerMetSerTyrL : 388 ! :!! 78 bp :!!|||!:!! ||| .!!|||| AsnAla++ ++ValLeuLysThrSerAlaGlyTyrL 40114 : AACGCTgt.........................agGTTTTAAAAACGTCTGCTGGATATC : 40224 389 : euSerValLeuArgValMet : 394 |||||||||||! !!.!||| euSerValLeuLeuAlaMet 40225 : TTTCCGTGTTGCTAGCTATG : 40244 vulgar: AmOr63 317 394 . KQ414804.1 39935 40244 + 128 M 62 186 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39936 40244 128 + . gene_id 1 ; sequence AmOr63 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39936 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39936 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40244 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40244 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39936 40244 128 + . alignment_id 1 ; Query AmOr63 ; Align 39936 318 186 ; Align 40200 380 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr63 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 326 -> 397 Target range: 34381 -> 34677 327 : GlnThrGluGlyLeuGlyAsnSerIleTyrPheCysThrTrpTyrAspMetProLysAsn : 346 |||!:!..!! !:!!.!!|||||| !||| ! !.!||||||:!!:!: !! GlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProPro 34382 : CAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCA : 34439 347 : ValSerHisAsnIleThrPheIleIleMetArgAlaGlnHisProValLeuLeuThrAla : 366 ! !:!! ! !:!! !||||||!!: |||.!! !.!|||:!!! !||||||||| GluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAla 34440 : GAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCA : 34499 367 : GlyLysPhePheValIleAsnMetGluThrTyrMetSer >>>> Target Intron : 380 ||||||||| !..!.!!::!||||||! !!:!! !!! 83 bp GlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34500 : GGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt................... : 34543 381 : 1 >>>> IleLeuArgIleSerMetSerTyrLeuSerValLeuArgValMetValAsnS : 397 ||||||!:!! !:!!|||.!!|||||||||||||||! !..!:!:..!..!| ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeuThrValThrGlyS 34544 : ......agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTCACAGTTACAGGTA : 34675 398 : er : 397 || er 34676 : GC : 34677 vulgar: AmOr63 326 397 . KQ414804.1 34381 34677 + 117 M 53 159 5 0 2 I 0 79 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34382 34677 117 + . gene_id 2 ; sequence AmOr63 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34382 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34382 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34677 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34677 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34382 34677 117 + . alignment_id 2 ; Query AmOr63 ; Align 34382 327 159 ; Align 34624 380 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr78 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 760 Query range: 187 -> 403 Target range: 10840 -> 13158 188 : ValTyrTyrIleGlyIleSerAsnPheCysPheAspThrValPheCysIleMetAlaVal : 207 :!!|||!:!! !||||||!!! !!||||||||||||!.!:!!||||||||||||::!||| LeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerVal 10841 : CTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTG : 10898 208 : HisLeuAlaGlyGlnPheArgIleLeuGlnTyrArgPheThrLysLeuCysAspThrAsp : 227 ||||||::!|||||||||||||||||||||||||||!!.|||||||||! !|||..!.!. HisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGln 10899 : CATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAA : 10958 228 : AsnGlnIleCysLysLysAsnLeu<-><->IleLeuGluGluGlnMetGlnLysPheHis : 245 !!|||||| :::||||||::: :!!||||||!!: ! !::!:!! !:!! TyrGlnIleSerGluLysAsnMetGluSerValLeuGluAspCysThrArgArgSerTyr 10959 : TATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGTAGATCTTAC : 11018 246 : GluLysPheLysLysTyrValArgArgHisGlnAlaLeuIleAspTyrHisGlnLysLeu : 265 ||||||||||||!..|||||||||!:!||||||.!!||||||||||||:!!:!!|||||| GluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLysLeu 11019 : GAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAGCTT : 11078 266 : GluAsnValTyrThrThrIleMetLeuSerGlnValLeuLeuPheSerValLeuIleCys : 285 |||:!!|||||||||! !|||!!:|||.!!|||||||||||||||||||||||||||||| GluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIleCys 11079 : GAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATTTGC : 11138 286 : LeuPheGlyTyrGlnValLeuLeu >>>> Target Intron 1 >>>> AlaThrA : 296 |||||||||||||||:!!|||||| 1305 bp |||!.!. LeuPheGlyTyrGlnIleLeuLeu++ ++AlaAsnT 11139 : CTCTTTGGTTATCAGATATTATTGgt.........................agGCTAATA : 12476 297 : laSerLeuAlaArgArgSerIlePheIlePheLeuLeuMetGlyAlaMetPheLeuLeuP : 316 !!||||||||||||||||||||||||!!:||||||:!! ||||||||| !!||||||| hrSerLeuAlaArgArgSerIlePheMetPheLeuIleCysGlyAlaMetValLeuLeuP 12477 : CTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTTTTATTGT : 12536 317 : heMetPheThrPheSerCysAsnGlyValMetGluGlnSerAspAsnValAlaValGlyT : 336 |||||||||||!:!||||||||| !|||!!:|||||||||||||||:!!||| !!!.!. heMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAlaPheAlaA 12537 : TTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCTTTTGCGG : 12596 337 : hrTyrSerAlaLeuTrpThrValMetProMetGluLysPheGlyArgMetLeuArgLysA : 356 !!||||||||||||||||||! !|||||||||.!.||| !|||!:!! !|||||| ! | laTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeuArgHisA 12597 : CGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTACGGCATG : 12656 357 : spLeuIleMetValIleMetArgSerArgArgValCysCysLeuThrAlaAsnArgPheP : 376 ||||||||||||||||| !||||||||||||||||||||||||||||||||| !!|||| spLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsnGlyPheP 12657 : ATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATGGATTTT : 12716 377 : heProIleSerLeuGluThrTyrThrLys >>>> Target Intron 2 >>>> Il : 386 |||||:!:||||||||||||||||||! ! 359 bp || heProValSerLeuGluThrTyrThrThr++ ++Il 12717 : TCCCTGTGTCCTTAGAAACTTATACTACGgt.........................agat : 13105 387 : eLeuSerThrAlaValSerTyrPheThrLeuLeuSerLysHisValAspAsn : 403 |||||||||||||!.!||||||||||||||||||!!!!!.:!!|||!!::!! eLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnValGluAsp 13106 : tttgAGTACCGCGGCGTCGTACTTCACATTATTGAGAAATAACGTAGAAGAT : 13158 vulgar: AmOr78 187 403 . KQ414828.1 10840 13158 + 760 M 48 144 G 0 6 M 58 174 5 0 2 I 0 1301 3 0 2 M 92 276 5 0 2 I 0 355 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10841 13158 760 + . gene_id 1 ; sequence AmOr78 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 10841 11164 . + . KQ414828.1 exonerate:protein2genome:local exon 10841 11164 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 11165 11166 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 11165 12469 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12468 12469 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 12470 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12745 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13104 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13103 13104 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 13105 13158 . + . KQ414828.1 exonerate:protein2genome:local exon 13105 13158 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10841 13158 760 + . alignment_id 1 ; Query AmOr78 ; Align 10841 188 144 ; Align 10991 236 174 ; Align 12470 294 276 ; Align 13105 386 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr78 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 725 Query range: 35 -> 404 Target range: 21801 -> 24196 36 : ArgIleLeuLeuValTyrThrValTrpIleLeuLeuLeuGlyMetIleIleAsnGlyArg : 55 |||! !! !|||:::|||...::: ||| ! !:!! ! !..! ArgLysCysLeuIleTyrValIleIleIleGln***ThrPheAlaTyrValLeuLysGlu 21802 : AGAAAATGTTTgatatatgtaataataatacaataaactTTTGCATATGTTCTTAAAGAG : 21859 56 : AspLeuTyrPheThrPheLeuTyrAsnGlyAspIleLeuTyrAlaLeuThrAsnAsnVal : 75 .!.:!! ...|||::: ! !:!!||| ! ! !|||!:!:!! GlnIleIleArgIleIleLeuPhePheGlnValCysMetTyrMetAlaCysAsnSerLeu 21860 : CAAATTATAcgtataattttgttttttcaggTTTGCATGTACATGGCATGCAACAGTTTA : 21919 76 : ThrMetValMetGlyLeuIleLysIleTyrIleIleLeuLeuTyrLysGlyLysPheLeu : 95 .!!:!!|||:!!! !:!!|||||||||!:!:!!:!!|||:!! ||| !||||||||| AlaLeuValLeuAspIleIleLysIlePheValLeuLeuValArgLysLysLysPheLeu 21920 : GCCCTGGTTTTGGATATAATCAAGATTTTCGTCCTACTCGTACGGAAGAAAAAGTTTCTC : 21979 96 : AsnLeuIleValHisMetGlnGlnAsnPheTrpAsnValAsnTyrAspTyrHisGluLys : 115 ..!||||||! !:!!||||||:!!|||||||||:!!:!!||||||||| ! !!|||!!. GlyLeuIleGluTyrMetGlnLysAsnPheTrpHisLeuAsnTyrAspGlnAspGluAsn 21980 : GGTCTGATTGAGTACATGCAGAAGAATTTTTGGCATTTGAACTACGACCAGGACGAGAAT : 22039 116 : GluIleLeuAspAspCysArgLysThrCysIlePhePheValSerSerLeuThrThrIle : 135 ...|||:!!! !!...!:!::!|||||||||!:!||||||!!! !!!!:!! ! ! SerIleIleAlaHisAlaLysArgThrCysIleTyrPheValCysValPheSerPheCys 22040 : TCTATTATCGCACACGCGAAACGAACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGT : 22099 136 : GlyIleCysAlaMetLeuSerTyrLeuMetThrProPheAla{I} >>>> Target I : 150 ..! !! !.!!:!:!!!||||||:!!!!:! !||||||!.!{ } 170 SerGlnSerThrValPheSerTyrIleIleArgProPheVal{S}++ 22100 : TCTCAATCTACAGTTTTTTCCTATATAATAAGGCCATTTGTA{T}gt............. : 22147 151 : ntron 1 >>>> {le}ArgSerGlyAsnAsnGluSerGluArgMetLeuProPheAsn : 164 bp { !}!.! !|||!!.|||||||||!!:||| ! ! !!:!:!! ++{er}AsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAsp 22148 : ............ag{ca}AATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGAT : 22356 165 : MetTrpLeuAspMetProLeuSerLysThrProTyrTyrGluIleThrPheLeuIleGln : 184 ||||||||||||:!:||||||||| !|||||||||||||||||||||::!:!!|||||| MetTrpLeuAspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGln 22357 : ATGTGGCTCGATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAG : 22416 185 : >>>> Target Intron 2 >>>> AlaMetCysValTyrTyrIleGlyIleSerA : 195 307 bp |||:!:! !|||||| ! :!!.!! !!! ++ ++AlaLeuSerValTyrGlnValSerAlaCysT 22417 : gt.........................agGCTTTATCTGTGTACCAAGTTAGCGCGTGTT : 22756 196 : snPheCysPheAspThrValPheCysIleMetAlaValHisLeuAlaGlyGlnPheArgI : 215 !!.!!||||||||| :::||| |||:::...:!!|||:!!|||||||||||||||| yrLeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgI 22757 : ACCTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTA : 22816 216 : leLeuGlnTyrArgPheThrLysLeuCysAspThrAspAsnGlnIle<->CysLysLysA : 234 ||||||||||||||.!!.!!!!.:!!! ! ! !..!.!. !:!: !!!..:!!| leLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluA 22817 : TACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAA : 22876 235 : snLeuIleLeuGluGlu<->GlnMetGlnLysPheHisGluLysPheLysLysTyrValA : 253 ||! !! ! !!!:||| ! :!!|||! !:!! |||||||||!!.! !:!!! snProSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleG 22877 : ATCCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTC : 22936 254 : rgArgHisGlnAlaLeuIleAspTyrHisGlnLysLeuGluAsnValTyrThrThrIleM : 273 :!!:!|||||||||||||||!!:!:! ! !! !||||||.!.|||!:!|||..!|||: lnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleV 22937 : AACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCG : 22996 274 : etLeuSerGlnValLeuLeuPheSerValLeuIleCysLeuPheGlyTyrGlnValLeuL : 293 !:|||.!!|||||||||:!!! !|||:!!|||||||||!!!.!!|||||||||||||||| alLeuGlyGlnValLeuMetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeuL 22997 : TACTCGGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCC : 23056 294 : eu >>>> Target Intron 3 >>>> AlaThrAlaSerLeuAlaArgArgSerIl : 303 || 492 bp !! ! !|||!!!! ! !||| ! eu++ ++IleLysLeuSerPheGluSerArgValAl 23057 : TGgt.........................agATAAAGTTATCATTTGAATCGCGCGTTGC : 23578 304 : ePheIlePheLeuLeuMetGlyAlaMetPheLeuLeuPheMetPheThrPheSerCysAs : 323 !||| ! !!!!|||||| !!.!||| !! !|||!::|||||||||!:!||||||:! aPheAlaCysPheLeuMetMetGlyMetSerGlnLeuTrpMetPheThrTyrSerCysAs 23579 : TTTCGCGTGCTTCTTGATGATGGGCATGAGTCAACTATGGATGTTCACGTATAGTTGCGA : 23638 324 : nGlyValMetGluGlnSerAspAsnValAlaValGlyThrTyrSerAlaLeuTrpThrVa : 343 ! !!:!!! !:!!||| |||:!!|||! !..!..!|||:!!!.!! !|||! ! pCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAs 23639 : TTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAA : 23698 344 : lMetProMetGluLysPheGlyArgMetLeuArgLysAspLeuIleMetValIleMetAr : 363 !:!:||||||!!:|||||||||!:!:!!|||||||||!!:||| !|||:!!|||:!!|| nLeuProMetAspLysPheGlyLysLeuLeuArgLysGluLeuGlnMetLeuIleLeuAr 23699 : TTTACCAATGGACAAATTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAG : 23758 364 : gSerArgArgValCysCysLeuThrAlaAsnArgPhePheProIleSerLeuGluThrTy : 383 |:!!|||||| !! !..!||||||||| ! !!|||||| !!|||||||||||||||!: gAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPh 23759 : GGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTT : 23818 384 : rThrLys >>>> Target Intron 4 >>>> IleLeuSerThrAlaValSerTyr : 393 !|||||| 313 bp |||:!!||||||:!!:!!|||||| eThrLys++ ++IleMetSerThrSerMetSerTyr 23819 : TACTAAGgt.........................agATCATGAGTACATCAATGTCGTAT : 24161 394 : PheThrLeuLeuSerLysHisValAspAsnSer : 404 ||||||||||||!.!:!! !:!!!!::!!!!! PheThrLeuLeuLysGlnCysIleGluAspThr 24162 : TTCACATTATTAAAACAATGTATCGAGGACACG : 24196 vulgar: AmOr78 35 404 . KQ414828.1 21801 24196 + 725 M 114 342 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 34 102 5 0 2 I 0 303 3 0 2 M 46 138 G 0 3 M 9 27 G 0 3 M 54 162 5 0 2 I 0 488 3 0 2 M 92 276 5 0 2 I 0 309 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21802 24196 725 + . gene_id 2 ; sequence AmOr78 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 21802 22144 . + . KQ414828.1 exonerate:protein2genome:local exon 21802 22144 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22145 22146 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22145 22314 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22313 22314 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 22315 22418 . + . KQ414828.1 exonerate:protein2genome:local exon 22315 22418 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22419 22420 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22419 22725 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 23058 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23059 23060 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23059 23550 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 23549 23550 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 23551 23826 . + . KQ414828.1 exonerate:protein2genome:local exon 23551 23826 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23827 23828 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23827 24139 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 24138 24139 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 24140 24196 . + . KQ414828.1 exonerate:protein2genome:local exon 24140 24196 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21802 24196 725 + . alignment_id 2 ; Query AmOr78 ; Align 21802 36 342 ; Align 22317 151 102 ; Align 22726 185 138 ; Align 22867 231 27 ; Align 22897 240 162 ; Align 23551 294 276 ; Align 24140 386 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr78 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 580 Query range: 147 -> 404 Target range: 2873 -> 6474 148 : PheAlaIleArgSerGlyAsnAsnGluSerGluArgMetLeuProPheAsnMetTrpLeuAs : 168 |||:!! !! |||...|||||||||!!:|||:!:||| ! !!|||.!.|||:!!|| PheSerAlaSerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAs 2874 : TTCTCAGCAAgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGA : 2934 169 : pMetProLeuSerLysThrProTyrTyrGluIleThrPheLeuIleGln >>>> Target : 185 |:!!|||:!!!!!! |||||||||||||||||| ||| |||||| 4 pLeuProIleThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2935 : CCTGCCGATAACCATCACACCATactatgaaatattatttacgaTACAGgt........... : 2987 186 : Intron 1 >>>> AlaMetCysValTyrTyrIleGlyIleSerAsnPheCysPheAspT : 200 06 bp !.!. !:!! |||:!! !!|||||| !!.!!|||.!!|||! ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspA 2988 : ..............agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACA : 3436 201 : hrValPheCysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeuGlnTyrArgPhe : 220 .! !!.!.|||!!:!!: !:!!||| !||| !||||||||||||||||||||||||.!. snPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeu 3437 : ATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTG : 3496 221 : ThrLysLeuCysAspThrAspAsnGlnIleCysLysLysAsnLeuIleLeuGluGluGlnMe : 241 :!!!!.:!!|||! !.!!:!!.!.!::! ||| ::: !....!. SerAsnValCysGlyAlaAsnGluArgSerAspLysIleSerLysLysThrProSerAsnSe 3497 : TCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTC : 3559 242 : tGlnLysPheHisGluLysPheLysLysTyrValArgArgHisGlnAlaLeuIleAspTyrH : 262 !.!.:!!! !:!!! |||||||||!!.! !:!!!:!!:!|||||||||||||||!!:||| rAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrC 3560 : GGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACT : 3622 263 : isGlnLysLeuGluAsnValTyrThrThrIleMetLeuSerGlnValLeuLeuPheSerVal : 282 !.!.||||||:!!.!.|||!:! !! !.!!:!!|||:!!||||||||||||||||||:!! ysAsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeu 3623 : GTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTG : 3682 283 : LeuIleCysLeuPheGlyTyrGlnValLeu >>>> Target Intron 2 >>>> Leu : 293 |||!!:|||||| !|||||| !|||:!! 457 bp ! LeuMetCysLeuAspGlyTyrLeuValMet++ ++Glu 3683 : TTAATGTGCCTCGATGGATATTTGGTGATGgt.........................agGAA : 4172 294 : AlaThrAlaSerLeuAlaArgArgSerIlePheIlePheLeuLeuMetGlyAlaMetPheLe : 314 ! !||| !!:!! !!:!||| !! !|||:!:|||! !|||! !|||..!:!!! !! AspThr---ProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGl 4173 : GATACT---CCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCA : 4232 315 : uLeuPheMetPheThrPheSerCysAsnGlyValMetGluGlnSerAspAsnValAlaValG : 335 !|||!!.|||||||||!:!||||||:!! !!:!!!!:..!:!!||| ||||||||| !! nLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnA 4233 : ACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATG : 4295 336 : lyThrTyrSerAlaLeuTrpThrValMetProMetGluLysPheGlyArgMetLeuArgLys : 355 .!! !|||..!..!! !|||! ! !:!!||||||!!:!:!! !|||||||||||||||||| laIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLys 4296 : CTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAA : 4355 356 : AspLeuIleMetValIleMetArgSerArgArgValCysCysLeuThrAlaAsnArgPhePh : 376 ||||||! !.!.|||||| ||||||||| ! !||||||||||||||| ! !!||||| AspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePh 4356 : GATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTT : 4418 377 : eProIleSerLeuGluThrTyrThrLys >>>> Target Intron 3 >>>> IleLe : 387 ||||:!:||||||||||||||||||..! 1970 bp :!!:! eProValSerLeuGluThrTyrThrSer++ ++ValIl 4419 : CCCTGTGTCACTGGAAACGTACACTTCGgt.........................agGTTAT : 6421 388 : uSerThrAlaValSerTyrPheThrLeuLeuSerLysHisValAspAsnSer : 404 !||||||||||||||||||||||||||||||!!!:!!!.!:!!!!::!!||| eSerThrAlaValSerTyrPheThrLeuLeuArgGlnArgIleGluAspSer 6422 : AAGTACAGCAGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAGGACAGC : 6474 vulgar: AmOr78 147 404 . KQ414828.1 2873 6474 + 580 M 37 111 5 0 2 I 0 402 3 0 2 M 108 324 5 0 2 I 0 453 3 0 2 M 3 9 G 1 0 M 89 267 5 0 2 I 0 1966 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2874 6474 580 + . gene_id 3 ; sequence AmOr78 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2874 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2874 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6474 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6474 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2874 6474 580 + . alignment_id 3 ; Query AmOr78 ; Align 2874 148 111 ; Align 3391 185 324 ; Align 4172 293 9 ; Align 4181 297 267 ; Align 6418 386 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr78 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 463 Query range: 181 -> 404 Target range: 32795 -> 34316 182 : LeuIleGlnAlaMetCysValTyrTyrIleGlyIleSerAsnPheCysPheAspThrVal : 201 |||! ||||||:!:! !|||||| ! :!!|||:!:!!! !!.!!|||||||||...::: LeuThrGlnAlaLeuSerValTyrGlnValGlyValCysTyrLeuCysPheAspAsnIle 32796 : ctCACGCAGGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCTttgataacatt : 32853 202 : PheCysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeuGlnTyrArgPheThr : 221 ||| ||||||..!:!!|||:!!||||||||||||||||||||||||||||||.!!.!! PhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAla 32854 : tttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCC : 32913 222 : LysLeuCysAspThrAspAsnGlnIleCysLysLysAsn<-><->LeuIleLeuGluGlu : 239 !!.:!!! ! ! !..!.!. !:!: !..!!.:!! !! !||| ! AsnValSerGlyLeuSerGluIleValLysSerAsnAspAsnThrSerThrAlaGluLeu 32914 : AATGTGTCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACAAGCACGGCTGAATTA : 32973 240 : GlnMetGlnLysPheHisGluLysPheLysLysTyrValArgArgHisGlnAlaLeuIle : 259 ! :!!|||! !:!! |||||||||!!.! !:!!!:!!:!||||||||||||||| TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 32974 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTaatt : 33033 260 : AspTyrHisGlnLysLeuGluAsnValTyrThrThrIleMetLeuSerGlnValLeuLeu : 279 :::::: ::: ||||||.!.|||!:!|||..!|||:!:|||.!!|||||||||:!! GluPheCysGluIleLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMet 33034 : gaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTAATG : 33093 280 : PheSerValLeuIleCysLeuPheGlyTyrGlnValLeuLeu >>>> Target Intr : 294 ||||||:!!:!!||||||!!! !||||||:!!||||||||| 406 bp PheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeu++ 33094 : TTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGgt................ : 33140 295 : on 1 >>>> AlaThrAlaSerLeuAlaArgArgSerIlePheIlePheLeuLeuMetG : 310 !||| ! !!!!!! ! !||| ! !|||! ! !!!!|||!!: ++IleThrLeuProPheGluSerArgValAlaPheThrCysPheLeuIleT 33141 : .........agATAACGTTACCATTTGAATCGCGCGTTGCTTTCACGTGCTTCTTGATTA : 33592 311 : lyAlaMetPheLeuLeuPheMetPheThrPheSerCysAsnGlyValMetGluGlnSerA : 330 !!.!:!! !! !|||!::|||||||||!:!||||||||| !!:!!! !:!!||| hrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAsnCysIleThrThrGluSerL 33593 : CGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCAATTGCATAACAACAGAAAGCC : 33652 331 : spAsnValAlaValGlyThrTyrSerAlaLeuTrpThrValMetProMetGluLysPheG : 350 |||:!!|||! !..!..!|||:!!!.!! !|||! ! !:!:||||||:::||||||| euAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheG 33653 : TGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATggataaatttg : 33712 351 : lyArgMetLeuArgLysAspLeuIleMetValIleMetArgSerArgArgValCysCysL : 370 ||::::::||||||||||||||| !:!!:!!|||:!!|||:!!|||||| !! !..!| lyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerAlaL 33713 : gaaaactgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCGCTT : 33772 371 : euThrAlaAsnArgPhePheProIleSerLeuGluThrTyrThrLys >>>> Target : 386 |||||||| ! !!|||||| !!|||!!!|||||||||!:!|||||| 4 euThrAlaCysGlyPhePheSerIleThrLeuGluThrPheThrLys++ 33773 : TGACTGCCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTACTAAGgt........... : 33822 387 : Intron 2 >>>> IleLeuSerThrAlaValSerTyrPheThrLeuLeuSerLysHi : 400 40 bp |||:!!||||||:!!:!!||||||||||||||||||!.!:!! ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnSe 33823 : ..............agATCATGAGTACATCAATGTCGTATTTCACCCTACTAAAACAAAG : 34302 401 : sValAspAsnSer : 404 !!.!!!::!!!!! rAlaGluAspThr 34303 : TGCCGAGGACACA : 34316 vulgar: AmOr78 181 404 . KQ414828.1 32795 34316 + 463 M 53 159 G 0 6 M 59 177 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32796 34316 463 + . gene_id 4 ; sequence AmOr78 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32796 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32796 33137 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 2 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34316 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34316 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32796 34316 463 + . alignment_id 4 ; Query AmOr78 ; Align 32796 182 159 ; Align 32961 235 177 ; Align 33544 294 276 ; Align 34260 386 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr78 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 444 Query range: 0 -> 148 Target range: 7890 -> 9130 1 : MetGlnSerGluAsnGlnLeuAspValSerIleThrLeuSerThrPhePheLeuArgAsnIl : 21 ||||||!!!|||!!..!.! !|||:!!||||||!.!||||||! !|||||||||||||||:! MetGlnThrGluLysAspSerAspIleSerIleAsnLeuSerLysPhePheLeuArgAsnVa 7891 : ATGCAAACGGAGAAGGATTCGGACATATCGATCAACTTGTCGAAATTCTTCTTGCGCAATGT : 7951 22 : eGlyLeuTrpMetSerAspAspProGlyGluGlnArgArgMetArgIleLeuLeuValTyrT : 42 !|||||||||! !:!!!!::!!! !!.!|||.!.|||!:!! !!:! |||:!!!.!|||| lGlyLeuTrpArgAlaGluAsnHisAlaGluAsnArgLysArgLysAlaLeuValAlaTyrT 7952 : CGGCCTGTGGAGGGCTGAGAATCACGCGGAGAATCGTAAAAGGAAAGCGTTGGTCGCCTACA : 8014 43 : hrValTrpIleLeuLeuLeuGlyMetIleIleAsnGlyArgAspLeuTyrPheThrPheLeu : 62 ||:!!|||! !:!!!!!|||!.!!!::!::!!.!. !||||||:!!|||||||||!::!!! hrIleTrpAsnMetPheLeuAlaIleValValGluThrArgAspMetTyrPheThrTrpPhe 8015 : CGATTTGGAACATGTTTTTGGCCATAGTGGTTGAAACGAGAGATATGTATTTCACCTGGTTC : 8074 63 : TyrAsnGly >>>> Target Intron 1 >>>> AspIleLeuTyrAlaLeuThrAsn : 73 |||!!.||| 796 bp ||||||||||||!.! !|||||| TyrLysGly++ ++AspIleLeuTyrValSerThrAsn 8075 : TATAAAGGCgt.........................agGATATTCTTTACGTTAGTACCAAC : 8903 74 : AsnValThrMetValMetGlyLeuIleLysIleTyrIleIleLeuLeuTyrLysGlyLysPh : 94 :!!!:!:!!:!!:!: ! !||||||:!! !:!!:!!|||:!!:!!|||! !:!!|| LeuLeuSerValIleLeuThrThrIleLysLeuThrValValLeuIleHisLysValGluPh 8904 : TTACTGAGCGTGATCTTAACTACGATCAAGCTAACTGTCGTACTAATACACAAAGTGGAATT : 8966 95 : eLeuAsnLeuIleValHisMetGlnGlnAsnPheTrpAsnValAsnTyrAspTyrHisGluL : 115 |:!!!:!||||||! !:!!||| ! :!!:!!||||||||||||:!!|||||| !||||||| eMetSerLeuIleAspTyrMetTyrGluHisPheTrpAsnValAspTyrAspLeuHisGluL 8967 : CATGAGTCTGATTGATTACATGTACGAACATTTCTGGAACGTGGATTACGATCTTCACGAGA : 9029 116 : ysGluIleLeuAspAspCysArgLysThrCysIlePhePheValSerSerLeuThrThrIle : 135 ||..!|||:!:|||:::|||:::||||||||||||.!!|||..!||||||:!!||||||||| ysArgIleMetAspAsnCysLysLysThrCysIleIlePheThrSerSerValThrThrIle 9030 : AAAGAATTATggataattgtaaaaaaactTGCATCATCTTCACTTCAAGCGTCACTACCATT : 9089 136 : GlyIleCysAlaMetLeuSerTyrLeuMetThrProPhe : 148 ||||||||||||!!::!!||||||:!! !||||||||| GlyIleCysAlaIleIleSerTyrIleAlaThrProPhe 9090 : GGCATATGCGCTATAATATCTTACATAGCGACACCGTTT : 9130 vulgar: AmOr78 0 148 . KQ414828.1 7890 9130 + 444 M 65 195 5 0 2 I 0 792 3 0 2 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 7891 9130 444 + . gene_id 5 ; sequence AmOr78 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 7891 8085 . + . KQ414828.1 exonerate:protein2genome:local exon 7891 8085 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 8086 8087 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 8086 8881 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 8880 8881 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 8882 9130 . + . KQ414828.1 exonerate:protein2genome:local exon 8882 9130 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 7891 9130 444 + . alignment_id 5 ; Query AmOr78 ; Align 7891 1 195 ; Align 8882 66 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr78 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 322 Query range: 152 -> 295 Target range: 37465 -> 38207 153 : GlyAsnAsnGluSerGluArgMetLeuProPheAsnMetTrpLeuAspMetProLeuSer : 172 |||!!.|||||||||!!:||| ! ! !!:!:!!||||||||||||:!:||||||||| GlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuProLeuSer 37466 : GGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCATTATCC : 37523 173 : LysThrProTyrTyrGluIleThrPheLeuIleGln >>>> Target Intron 1 > : 185 ! !|||||||||||||||||||||::!:!!|||||| 307 bp IleThrProTyrTyrGluIleThrTyrIleIleGln++ 37524 : ATAACAccatattatgaaattacttACATAATACAGgt...................... : 37564 186 : >>> AlaMetCysValTyrTyrIleGlyIleSerAsnPheCysPheAspThrValPheC : 203 |||:!:! !|||||| ! :!!.!! !!! !!.!!||||||||| :::||| ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIlePheP 37565 : ...agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatttttt : 37923 204 : ysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeuGlnTyrArgPheThrLysL : 223 |||:::...:!!|||:!!||||||||||||||||||||||||||||||.!!.!!!!.: heIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnV 37924 : tcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATG : 37983 224 : euCysAspThrAspAsnGlnIle<->CysLysLysAsnLeuIleLeuGluGlu<->GlnM : 241 !!! ! ! !..!.!. !:!: !!!..:!!|||! !! ! !!!:||| ! alSerGlyLeuSerGluIleValLysSerSerGluAsnProSerThrAspGluLeuTyrS 37984 : TGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAATTATACT : 38043 242 : etGlnLysPheHisGluLysPheLysLysTyrValArgArgHisGlnAlaLeuIleAspT : 261 :!!|||! !:!! |||||||||!!.! !:!!!:!!:!|||||||||||||||!!:! erGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluP 38044 : CAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAAT : 38103 262 : yrHisGlnLysLeuGluAsnValTyrThrThrIleMetLeuSerGlnValLeuLeuPheS : 281 :! ! !! !||||||.!.|||!:!|||..!||| |||.!!|||||||||:!!|||| heCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnValLeuMetPheS 38104 : TTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCTAATGTTTA : 38163 282 : erValLeuIleCysLeuPheGlyTyrGlnValLeuLeuAlaThr : 295 ||:!!|||||||||!!! !!! !||||||!.!||||||!.!!:! erIleLeuIleCysPheValValTyrGlnAlaLeuLeuValSer 38164 : GCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGGTGAGT : 38207 vulgar: AmOr78 152 295 . KQ414828.1 37465 38207 + 322 M 32 96 5 0 2 I 0 303 3 0 2 M 46 138 G 0 3 M 9 27 G 0 3 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37466 38207 322 + . gene_id 6 ; sequence AmOr78 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37466 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37466 37561 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 38207 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 38207 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37466 38207 322 + . alignment_id 6 ; Query AmOr78 ; Align 37466 153 96 ; Align 37869 185 138 ; Align 38010 231 27 ; Align 38040 240 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr78 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 301 Query range: 56 -> 189 Target range: 26897 -> 27465 57 : LeuTyrPheThrPheLeuTyrAsnGlyAspIleLeuTyrAlaLeuThrAsnAsnValThr : 76 |||||| ||||||::: !! ! !:!!||| ! ! !|||..!:!!.!! LeuTyrVal***PheLeuPheLeuGlnValCysMetTyrMetAlaGlyAsnGlyLeuAla 26898 : ttatacgtctaatttctatttctacaGGTTTGCATGTACATGGCTGGCAACGGTTTAGCC : 26955 77 : MetValMetGlyLeuIleLysIleTyrIleIleLeuLeuTyrLysGlyLysPheLeuAsn : 96 ||||||:!!! !:!!|||||||||!:!! !:!!:!!:!!:!!||| !|||||||||..! MetValLeuAspIleIleLysIlePheThrLeuValValHisLysLysLysPheLeuGly 26956 : ATGGTTTTGGATATAATCAAGATTTTCACCCTAGTCGTACACAAGAAAAAGTTTCTCGGT : 27015 97 : LeuIleValHisMetGlnGlnAsnPheTrpAsnValAsnTyrAspTyrHisGluLysGlu : 116 ||||||! !:!!||||||:!!|||||||||:!!:!!||||||||| ! :!!|||!!.... LeuIleGluTyrMetGlnLysAsnPheTrpHisLeuAsnTyrAspGlnTyrGluAsnSer 27016 : CTGATTGAGTACATGCAGAAGAATTTTTGGCATTTGAACTACGATCAGTACGAGAATTCT : 27075 117 : IleLeuAspAspCysArgLysThrCysIlePhePheValSerSerLeuThrThrIleGly : 136 :!!|||! .!....!:!::!! !||||||!:!||||||!! |||::: ...... ValLeuAlaGlnAlaLysArgMetCysIleTyrPheValCysValLeuSerPhePheSer 27076 : GTTTTGGCACAGGCGAAACGAATGTGCATTTACTTCGTGTGcgttttgtcatttttttct : 27135 137 : IleCysAlaMetLeuSerTyrLeuMetThrProPheAla{I} >>>> Target Intr : 150 :!!:!:|||||||||:!!!!:! !|||.!!!.!{ } 169 bp GlnSerSerValLeuSerTyrIleIleArgProLeuVal{S}++ 27136 : caatctTCAGTTCTTTCCTATATCATAAGGCCACTTGTA{T}gt................ : 27180 151 : on 1 >>>> {le}ArgSerGlyAsnAsnGluSerGluArgMetLeuProPheAsnMet : 165 { !}!.! !|||!!.|||||||||!!:||| ! ! !|||:!!||| ++{er}AsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMet 27181 : .........ag{ca}AATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATG : 27391 166 : TrpLeuAspMetProLeuSerLysThrProTyrTyrGluIleThrPheLeuIleGlnAla : 185 |||!!!|||:!:||||||||| !|||||||||||||||||||||::!:!!||||||!.! TrpPheAspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnVal 27392 : TGGTTCGATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTA : 27451 186 : MetCysValTyr : 189 :!: :!!!:! LeuProIlePhe 27452 : TTACCAATTTTC : 27465 vulgar: AmOr78 56 189 . KQ414828.1 26897 27465 + 301 M 93 279 S 0 1 5 0 2 I 0 165 3 0 2 S 1 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26898 27465 301 + . gene_id 7 ; sequence AmOr78 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 26898 27177 . + . KQ414828.1 exonerate:protein2genome:local exon 26898 27177 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 27178 27179 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 27178 27346 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 27345 27346 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 27347 27465 . + . KQ414828.1 exonerate:protein2genome:local exon 27347 27465 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 26898 27465 301 + . alignment_id 7 ; Query AmOr78 ; Align 26898 57 279 ; Align 27349 151 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr78 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 245 Query range: 288 -> 389 Target range: 19341 -> 19644 289 : TyrGlnValLeuLeuAlaThrAlaSerLeuAlaArgArgSerIlePheIlePheLeuLeu : 308 ||| ! ||||||! !|||!.!.!! !! ! !! !||| !||||||||||||! !:!! TyrTyrValLeuGlnAlaAsnThrProThrArgThrArgLeuIlePheIlePheHisIle 19342 : TATTACGTTTTACAGGCAAATACACCTACCAGAACCCGACTGATTTTCATCTTTCACATA : 19399 309 : MetGlyAlaMetPheLeuLeuPheMetPheThrPheSerCysAsnGlyValMetGluGln : 328 !.!..!|||! !! !|||.!.|||||||||!:!||||||:!! !!:!!!!:..!:!! GlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGlu 19400 : GGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGCTGCGACTGCATCATAAGAGAA : 19459 329 : SerAspAsnValAlaValGlyThrTyrSerAlaLeuTrpThrValMetProMetGluLys : 348 ||| !:!..!|||! !!.!..!||||||!.!! !||||||:!!:!:||||||... ! SerThrSerThrAlaGluAlaValTyrSerGlyProTrpThrLeuLeuProMetSerAla 19460 : AGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGACACTTTTACCAATGAGCGCA : 19519 349 : PheGlyArgMetLeuArgLysAspLeuIleMetValIleMetArgSerArgArgValCys : 368 !|||!:!|||:!!||||||||||||!!::!:|||||||||||||||!!! ! !||| AspGlyLysMetIleArgLysAspLeuMetLeuValIleMetArgSerSerValProCys 19520 : GACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCATGAGATCGAGCGTACCTTGT : 19579 369 : CysLeuThrAlaAsnArgPhePheProIleSerLeuGluThrTyrThrLysIleLeuSer : 388 ||||||||||||!.. !!|||||| !:!:|||||||||||||||||| !:!!:!! ! CysLeuThrAlaArgGlyPhePheValValSerLeuGluThrTyrThrGlyValIleVal 19580 : TGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAACGTACACAGGGGTAATCGTC : 19639 389 : Thr : 389 ||| Thr 19640 : ACC : 19644 vulgar: AmOr78 288 389 . KQ414828.1 19341 19644 + 245 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 19342 19644 245 + . gene_id 8 ; sequence AmOr78 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 19342 19644 . + . KQ414828.1 exonerate:protein2genome:local exon 19342 19644 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 19342 19644 245 + . alignment_id 8 ; Query AmOr78 ; Align 19342 289 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr78 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 242 Query range: 152 -> 225 Target range: 17833 -> 18162 153 : GlyAsnAsnGluSerGluArgMetLeuProPheAsnMetTrpLeuAspMetProLeuSer : 172 |||...|||||||||||||||!!:||||||||||||||||||:!!:!!:!!||||||||| GlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpValAsnLeuProLeuSer 17834 : ggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTCAACTTGCCATTATCA : 17891 173 : LysThrProTyrTyrGluIleThrPheLeuIleGln >>>> Target Intron 1 > : 185 ! !|||||||||||||||||||||||| :::||| 110 bp MetThrProTyrTyrGluIleThrPheSerLeuGln++ 17892 : ATGACGCCATATTACgaaataactttttcattaCAGgt...................... : 17932 186 : >>> AlaMetCysValTyrTyrIleGlyIleSerAsnPheCysPheAspThrValPheC : 203 ..!:!!! !:!!|||:!!||||||:!:||| !!||||||||||||... ...| ++ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPheLeuC 17933 : ...aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgcttcgacaattttttat : 18094 204 : ysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeuGlnTyrArgPheThrLysL : 223 |||||||| !:!!||| !||| !|||||||||:!!||||||||||||.!..!!!!.: ysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnTyrArgMetAlaAsnM 18095 : gcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAATACCGAATGGCGAATA : 18154 224 : euCysAsp : 225 !! !||| etThrAsp 18155 : TGACCGAT : 18162 vulgar: AmOr78 152 225 . KQ414828.1 17833 18162 + 242 M 32 96 5 0 2 I 0 106 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17834 18162 242 + . gene_id 9 ; sequence AmOr78 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17834 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17834 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18162 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18162 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17834 18162 242 + . alignment_id 9 ; Query AmOr78 ; Align 17834 153 96 ; Align 18040 185 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr78 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 201 Query range: 304 -> 386 Target range: 38514 -> 38760 305 : IlePheLeuLeuMetGlyAlaMetPheLeuLeuPheMetPheThrPheSerCysAsnGly : 324 !!:||| ! !||| !!.!:!! !! !|||!::|||||||||!:!||||||:!! !! MetPheAlaThrMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCys 38515 : ATGTTCGCAACGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGC : 38572 325 : ValMetGluGlnSerAspAsnValAlaValGlyThrTyrSerAlaLeuTrpThrValMet : 344 :!!! !:!!||| |||:!!|||! !..!..!|||:!!!.!! !|||! ! !:!: IleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeu 38573 : ATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTA : 38632 345 : ProMetGluLysPheGlyArgMetLeuArgLysAspLeuIleMetValIleMetArgSer : 364 ||||||:::|||||||||::::::||||||||||||||| !:!!:!!|||:!!|||:!! ProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAla 38633 : CCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCG : 38692 365 : ArgArgValCysCysLeuThrAlaAsnArgPhePheProIleSerLeuGluThrTyrThr : 384 |||||| !! !! !||||||||| ! !!|||||| !!|||||||||||||||!:!||| ArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThr 38693 : AGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACT : 38752 385 : LysIle : 386 |||:!! LysVal 38753 : AAGGTA : 38760 vulgar: AmOr78 304 386 . KQ414828.1 38514 38760 + 201 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38515 38760 201 + . gene_id 10 ; sequence AmOr78 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38515 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38515 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38515 38760 201 + . alignment_id 10 ; Query AmOr78 ; Align 38515 305 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr78 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 196 Query range: 308 -> 386 Target range: 28550 -> 28784 309 : MetGlyAlaMetPheLeuLeuPheMetPheThrPheSerCysAsnGlyValMetGluGln : 328 ||| !!.!:!! !! !|||!::|||||||||!:!||||||:!! !!:!!! !:!! MetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGlu 28551 : ATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAA : 28608 329 : SerAspAsnValAlaValGlyThrTyrSerAlaLeuTrpThrValMetProMetGluLys : 348 ||| |||:!!|||! !..!..!|||:!!!.!! !|||! ! !:!:||||||:::||| SerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLys 28609 : AGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaa : 28668 349 : PheGlyArgMetLeuArgLysAspLeuIleMetValIleMetArgSerArgArgValCys : 368 ||||||::::::||||||||||||||| !:!!:!!|||:!!|||:!!|||||| !! ! PheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSer 28669 : tttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCC : 28728 369 : CysLeuThrAlaAsnArgPhePheProIleSerLeuGluThrTyrThrLysIle : 386 ! !||||||||| ! !!|||||| !!|||||||||||||||!:!||||||:!! SerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 28729 : TCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 28784 vulgar: AmOr78 308 386 . KQ414828.1 28550 28784 + 196 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28551 28784 196 + . gene_id 11 ; sequence AmOr78 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28551 28784 . + . KQ414828.1 exonerate:protein2genome:local exon 28551 28784 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28551 28784 196 + . alignment_id 11 ; Query AmOr78 ; Align 28551 309 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr78 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 191 Query range: 56 -> 152 Target range: 31943 -> 32231 57 : LeuTyrPheThrPheLeuTyrAsnGlyAspIleLeuTyrAlaLeuThrAsnAsnValThr : 76 |||||| ||||||::: ! ! !:!!||| ! ! !|||!:!:!!.!! LeuTyrVal***PheLeuPheLeuGlnValCysMetTyrMetAlaCysAsnSerIleAla 31944 : TTATACGtctaatttctatttcttcagGTTTGCATGTACATGGCATGCAACAGTATAGCC : 32001 77 : MetValMetGlyLeuIleLysIleTyrIleIleLeuLeuTyrLysGlyLysPheLeuAsn : 96 :!!|||:!!! !:!!|||||||||!:!:!!:!!:!!:!! ||| !|||||||||..! LeuValLeuAspIleIleLysIlePheValLeuValValArgLysLysLysPheLeuGly 32002 : CTGGTTTTGGATATAATCAAGATTTTCGTCCTAGTCGTACGGAAGAAAAAGTTTCTCGGT : 32061 97 : LeuIleValHisMetGlnGlnAsnPheTrpAsnValAsnTyrAspTyrHisGluLysGlu : 116 ||||||! !:!!||||||:::||||||:::::::::||||||||| ! !!|||!!.... LeuIleGluTyrMetGlnLysAsnPhePheHisLeuAsnTyrAspGlnAspGluAsnSer 32062 : CTGATTGAGTACATgcagaagaatttctttcatttgaaCTACGATCAGGACGAGAATTCT : 32121 117 : IleLeuAspAspCysArgLysThrCysIlePhePheValSerSerLeuThrThrIleGly : 136 |||:!!! !!...!:!::!|||||||||!:!||||||!!! !!!!:!! ! !..! IleIleAlaHisAlaLysArgThrCysIleTyrPheValCysValPheSerPheCysSer 32122 : ATTATCGCACACGCGAAACGAACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTTCT : 32181 137 : IleCysAlaMetLeuSerTyrLeuMetThrProPheAlaIleArgSer : 152 !! !.!!:!:!!!||||||:!!!!:! !||||||!.! !!:!||| GlnSerThrValPheSerTyrIleIleArgProPheValCysLysSer 32182 : CAATCTACAGTTTTTTCCTATATAATAAGGCCATTTGTATGTAAGTCT : 32231 vulgar: AmOr78 56 152 . KQ414828.1 31943 32231 + 191 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31944 32231 191 + . gene_id 12 ; sequence AmOr78 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 31944 32231 . + . KQ414828.1 exonerate:protein2genome:local exon 31944 32231 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31944 32231 191 + . alignment_id 12 ; Query AmOr78 ; Align 31944 57 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr78 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 244 -> 293 Target range: 18234 -> 18381 245 : HisGluLysPheLysLysTyrValArgArgHisGlnAlaLeuIleAspTyrHisGlnLys : 264 :!!.!. .!!||| ! |||:!!|||!:!|||||| !||||||! !||| !.!.||| TyrAsnValLeuLysAspTyrIleArgGlnHisGlnAsnLeuIleAlaTyrCysAsnLys 18235 : TACAACGTTCTCAAAGATTATATCAGACAGCATCAGAACCTGATTGCTTATTGCAACAAA : 18292 265 : LeuGluAsnValTyrThrThrIleMetLeuSerGlnValLeuLeuPheSerValLeuIle : 284 ||||||!!.|||!:!!.!! !|||:!:|||.!!|||:!!|||:!!||||||:!!|||||| LeuGluLysValPheAsnIleIleValLeuGlyGlnLeuLeuMetPheSerMetLeuIle 18293 : CTCGAGAAAGTGTTCAATATCATTGTTCTGGGGCAATTGTTAATGTTCAGCATGTTGATC : 18352 285 : CysLeuPheGlyTyrGlnValLeuLeu : 293 |||||| !|||!:!|||:!!|||:!! CysLeuAspGlyPheGlnIleLeuMet 18353 : TGTCTCGATGGATTTCAGATACTTATG : 18381 vulgar: AmOr78 244 293 . KQ414828.1 18234 18381 + 134 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 18235 18381 134 + . gene_id 13 ; sequence AmOr78 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 18235 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18235 18381 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 18235 18381 134 + . alignment_id 13 ; Query AmOr78 ; Align 18235 245 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr78 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 152 -> 189 Target range: 32401 -> 32512 153 : GlyAsnAsnGluSerGluArgMetLeuProPheAsnMetTrpLeuAspMetProLeuSer : 172 |||!!.|||||||||!!:||| ! ! !!:!:!!||||||||||||:!:||||||||| GlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuProLeuSer 32402 : GGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCATTATCC : 32459 173 : LysThrProTyrTyrGluIleThrPheLeuIleGlnAlaMetCysValTyr : 189 !|||||||||||||||||||||::!:!!||||||!.!:!: :!!!:! ValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuProIlePhe 32460 : GTAACAccatattatgaaattacttACATAATACAGGTATTACCAATTTTC : 32512 vulgar: AmOr78 152 189 . KQ414828.1 32401 32512 + 124 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32402 32512 124 + . gene_id 14 ; sequence AmOr78 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 32402 32512 . + . KQ414828.1 exonerate:protein2genome:local exon 32402 32512 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32402 32512 124 + . alignment_id 14 ; Query AmOr78 ; Align 32402 153 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr78 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 0 -> 61 Target range: 15100 -> 15283 1 : MetGlnSerGluAsnGlnLeuAspValSerIleThrLeuSerThrPhePheLeuArgAsn : 20 |||...||| !.! !|||:!!||||||!:!|||!!!:!! !!|||:!!!:!! ! MetSerSerPheThrThrAspAspIleSerIleSerLeuThrSerValPheMetLysIle 15101 : ATGAGTAGTTTCACCACCGATGACATATCAATCAGCCTGACGTCCGTTTTCATGAAGATC : 15158 21 : IleGlyLeuTrpMetSerAspAspProGlyGluGlnArgArgMetArgIleLeuLeuVal : 40 :!!||||||||||||:!!...:!!! ! !||||||||| ! !.!||| !||| ! ValGlyLeuTrpMetAlaSerAsnArgPheGluGlnArgValArgAsnIleThrLeuCys 15159 : GTTGGACTGTGGATGGCGTCGAACCGTTTCGAGCAACGAGTACGAAATATCACGCTGTGT : 15218 41 : TyrThrValTrpIleLeuLeuLeuGlyMetIleIleAsnGlyArgAspLeuTyrPheThr : 60 ||||||:!! :!!|||!!!!.!:!! |||.!. !! !|||||||||!:!:!! TyrThrLeuIleAlaIleLeuPheAlaLeuTrpIleGlnMetThrAspLeuTyrTyrSer 15219 : TACACGCTGATCGCGATTCTCTTCGCCCTGTGGATACAAATGACGGATTTGTATTACTCG : 15278 61 : Phe : 61 !:: Trp 15279 : TGG : 15283 vulgar: AmOr78 0 61 . KQ414828.1 15100 15283 + 110 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15101 15283 110 + . gene_id 15 ; sequence AmOr78 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 15101 15283 . + . KQ414828.1 exonerate:protein2genome:local exon 15101 15283 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15101 15283 110 + . alignment_id 15 ; Query AmOr78 ; Align 15101 1 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1208 Query range: 6 -> 398 Target range: 724 -> 6459 7 : ArgAspLeuSerIleThrValThrAlaPheTyrMetLysIleAlaGlyPheTrpThrSerTh : 27 ||||||:!!:!!:!:||||||||||||||||||:!!|||||| !||||||||| !:!! ArgAspIleAlaValThrValThrAlaPheTyrLeuLysIleIleGlyPheTrpLeuAlaAs 725 : AGGGACATAGCGGTGACCGTTACGGCTTTCTACTTGAAAATTATCGGCTTCTGGTTAGCTGA : 785 28 : rAsnTyrValGluGluArgArgArgAsnValThrMetSerTyrThrLeuPheAlaIleLeuP : 48 !!.!|||! !|||:!:|||||||||... .....!!:!!:!|||:!!||| !:!::!!! pThrTyrGluGluLysArgArgArgLysPheAlaGlnAsnPheThrIlePheMetLeuValC 786 : CACTTACGAGGAGAAacgtcgaagaaaattcgcgcAGAATTTCACGATATTTATGCTGGTGT : 848 49 : heAlaAlaThrThrGluAlaArgAspLeuTyrPheSerTrpGlyAsnPheSer >>>> Ta : 66 !|||!.!..!! !|||.!!||||||:!!|||!:!!!!||||||:!!|||||| ysAlaValValIleGluThrArgAspIleTyrTyrThrTrpGlyAspPheSer++ 849 : GCGCTGTGGTAATTGAGACGAGGGATATCTATTACACCTGGGGTGATTTCAGCgt....... : 904 67 : rget Intron 1 >>>> AspSerIleTyrValAlaCysAsnIleIleThrValSerLeu : 79 1408 bp ! !:!!|||:!! !|||||||||:!!|||:!!.!!:!! ++IleValValTyrIleMetCysAsnIleLeuThrLeuGlyIle 905 : ..................agATCGTTGTATACATAATGTGCAACATTCTAACACTGGGCATA : 2349 80 : ValLeuIleLysLeuLeuThrSerPheIleTyrAsnGluGluLeuLeuGlyIleIleArgTy : 100 !|||.!!|||:!!!!! !|||.!. !!!.:!!:!!|||||| :::|||::::: SerLeuPheLysIlePheLeuSerMetTrpSerLysLysLysLeuLeuGluLeuIleLysPh 2350 : AGTTTGTTCAAGATCTTTCTCTCGATGTGGAGTAAGAAAAAACttttggaattaattaaatt : 2412 101 : rAlaLysThrAsnPheTrpHisSerAsnTyrAspThrCysGluLysSerIleMetAsnLysC : 121 :|||!:!||||||||||||||||||:!!||||||:!! |||:!!! !|||:!!|||:!!| eAlaArgThrAsnPheTrpHisSerAspTyrAspSerGlnGluGlnIleIleValAsnGluC 2413 : cgccAGAACGAATTTCTGGCATTCGGATTATGACTCGCAGGAGCAAATTATTGTGAACGAGT : 2475 122 : ysGlnArgThrCysAsnTyrLeuValPheValPheThrPhePheAlaGlnGlyThrValLeu : 141 ||:!!|||||||||!..!:!|||:!!! !||||||!.!|||||||||.!.|||||||||! ! ysLysArgThrCysThrPheLeuIleCysValPheAsnPhePheAlaAsnGlyThrValSer 2476 : GTAAACGCACTTGTACATTCCTTATATGCGTGTTTAATTTCTTCGCTAATGGGACAGTGTCT : 2535 142 : GlyPheIleLeuArgProIleLeu{V} >>>> Target Intron 2 >>>> {al}As : 151 |||!:!|||:!!|||||||||:!!{!} 318 bp {.!}!: GlyTyrIleIleArgProIleVal{A}++ ++{la}Se 2536 : GGATACATAATCAGGCCAATTGTA{G}gt.........................ag{CA}Ag : 2883 152 : nArgGlyLysAsnGluSerAspArgIleLeuProPheAsnMetTrpLeuGluLeuProLeuS : 172 : |||||||||||||||||||||:!!||| ! !!|||.!.|||:!!!!:||||||:!!! rIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuProIleT 2884 : tattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCCGATAA : 2946 173 : erIleThrProTyrPheGluValMetPhePheValGln >>>> Target Intron 3 > : 185 !!||||||||||||:::|||::::::||| :!!||| 406 bp hrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2947 : CCATCACACCATactatgaaatattatttacgaTACAGgt...................... : 2987 186 : >>> ValValPheValTyrHisValCysValCysTyrHisCysPheAspSerLeuLeuCys : 203 :!! !!.!!:!! :!!||||||:!! !!|||! !|||.!!|||!:!!!!|||||| ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheLeuCys 2988 : ...agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTCTGTGC : 3445 204 : IleLeuAsnLeuHisThrAlaSerGlnPheArgIleLeuGlnHisArgPheAlaAsnThrCy : 224 !!::!!|||||||||||||||!!!||||||||||||||||||:!!|||.!.:!!|||..!|| MetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnValCy 3446 : ATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAATGTGTG : 3508 225 : sAsn<->GluLysArgGlyLysArgAspGluAspGluGluSerAlaLeuSerPheTyrGluT : 244 |..! .!.:!!|||... ::: ... ::: !!:!! !||| ! ! | sGlyAlaAsnGluArgSerAspLysIleSerLysLysThrProSerAsnSerAspGluCysT 3509 : CGGTGCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATGCT : 3571 245 : yrSerLysLeuLysAlaTyrIleArgGlnHisGlnAlaLeuIleGluTyrCysLysLysLeu : 264 ||:!!|||!!!||| !! !|||!:!|||||||||||||||||||||||||||!!.|||||| yrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnLysLeu 3572 : ACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACAAACTT : 3631 265 : GluGlnValPheAsnSerIleValPheGlyGlnValLeuLeuPheSerLeuLeuMetCysLe : 285 :!!:!!||||||..!! !.!!|||.!!!.!|||||||||||||||||||||||||||||||| GlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLe 3632 : CAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCT : 3694 286 : uAspGlyTyrLeuIleLeuMet >>>> Target Intron 4 >>>> GluGluThrPr : 296 |||||||||||||:!: ||| 457 bp |||!!:||||| uAspGlyTyrLeuVal---Met++ ++GluAspThrPr 3695 : CGATGGATATTTGGTG---ATGgt.........................agGAAGATACTCC : 4181 297 : oPheGlyArgArgValThrPheThrPheHisIleThrGlyCysMetCysGlnLeuLeuMetP : 317 |.!! !!:!|||:!!|||||| !||||||:!!|||||||||:!!|||||||||||||||| oIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuMetP 4182 : CATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGATGT : 4244 318 : heThrTyrSerCysAspCysLeuIleArgAspSerMetAspIleAlaAspAlaAlaTyrAsn : 337 |||||||||||||||||||||||||||||!!:|||:!!:!!:!:|||:!!||| !|||:!! heThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIleTyrAsp 4245 : TCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATATACGAC : 4304 338 : CysSerTrpSerPheLeuProMetAspLysTyrGlyLysMetIleArgArgAspLeuMetPh : 358 |||||||||! ! !||||||||||||!:!! !|||::!|||:!:|||!:!||||||! || CysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAspLeuThrPh 4305 : TGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGACATT : 4367 359 : eValIleThrArgSerArgThrProCysCysLeuThrAlaCysGlyPhePheAlaValSerL : 379 ||||||| !|||||||||..!|||||||||||||||||||||||||||||| !!||||||| eValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePheProValSerL 4368 : CGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCAC : 4430 380 : euGluThrTyrThrLys >>>> Target Intron 5 >>>> ValLeuSerThrAlaI : 390 ||||||||||||||..! 1970 bp |||:!!|||||||||: euGluThrTyrThrSer++ ++ValIleSerThrAlaV 4431 : TGGAAACGTACACTTCGgt.........................agGTTATAAGTACAGCAG : 6433 391 : leSerIlePheThrIleLeuLysArg : 398 !:||| !||||||:!:|||!:!!:! alSerTyrPheThrLeuLeuArgGln 6434 : TGTCGTACTTCACACTGTTAAGGCAA : 6459 vulgar: AmOr76 6 398 . KQ414828.1 724 6459 + 1208 M 59 177 5 0 2 I 0 1404 3 0 2 M 84 252 S 0 1 5 0 2 I 0 314 3 0 2 S 1 2 M 34 102 5 0 2 I 0 402 3 0 2 M 41 123 G 0 3 M 65 195 G 1 0 M 1 3 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 725 6459 1208 + . gene_id 1 ; sequence AmOr76 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 725 901 . + . KQ414828.1 exonerate:protein2genome:local exon 725 901 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 902 903 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 902 2309 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 2308 2309 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 2310 2562 . + . KQ414828.1 exonerate:protein2genome:local exon 2310 2562 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2563 2564 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 2563 2880 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 2879 2880 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 2881 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2881 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 3 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 3 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6459 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6459 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 725 6459 1208 + . alignment_id 1 ; Query AmOr76 ; Align 725 7 177 ; Align 2310 66 252 ; Align 2883 151 102 ; Align 3391 185 123 ; Align 3517 226 195 ; Align 3712 292 3 ; Align 4172 293 276 ; Align 6418 385 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 886 Query range: 0 -> 398 Target range: 15100 -> 19897 1 : MetLysSerLysGluValArgAspLeuSerIleThrValThrAlaPheTyrMetLysIle : 20 |||!..||| ..! !|||:!!||||||!:!:!!|||:!! !!!:!||||||||| MetSerSerPheThrThrAspAspIleSerIleSerLeuThrSerValPheMetLysIle 15101 : ATGAGTAGTTTCACCACCGATGACATATCAATCAGCCTGACGTCCGTTTTCATGAAGATC : 15158 21 : AlaGlyPheTrpThrSerThrAsnTyrValGluGluArgArgArgAsnValThrMetSer : 40 !.!|||.!.|||! !:!!:!!||| ! !!|||:!!||| !||||||:!!|||:!!!!! ValGlyLeuTrpMetAlaSerAsnArgPheGluGlnArgValArgAsnIleThrLeuCys 15159 : GTTGGACTGTGGATGGCGTCGAACCGTTTCGAGCAACGAGTACGAAATATCACGCTGTGT : 15218 41 : TyrThrLeuPheAlaIleLeuPheAlaAlaThrThrGluAlaArgAspLeuTyrPheSer : 60 |||||||||.!!||||||||||||||| ! !! !:!! !! !|||||||||!:!||| TyrThrLeuIleAlaIleLeuPheAlaLeuTrpIleGlnMetThrAspLeuTyrTyrSer 15219 : TACACGCTGATCGCGATTCTCTTCGCCCTGTGGATACAAATGACGGATTTGTATTACTCG : 15278 61 : TrpGlyAsnPhe{S} >>>> Target Intron 1 >>>> {er}AspSerIleTyr : 69 ||||||:!!|||{.} 891 bp {.!}! !!!!:!!||| TrpGlyAspPhe{G}++ --{lu}AlaCysLeuTyr 15279 : TGGGGAGATTTT{G}gt.........................gc{AG}GCCTGTTTATAT : 16196 70 : ValAlaCysAsnIleIleThrValSerLeuValLeuIleLysLeuLeuThrSerPheIle : 89 ..!||||||||||||:!!:!!:!!!!!:!! !!!!:!!|||:!!|||..!! !.!! ! ThrAlaCysAsnIleLeuSerLeuThrIleProPheLeuLysIleLeuValLeuLeuAla 16197 : ACTGCATGCAACATTTTATCGTTAACAATACCGTTTCTCAAGATACTCGTCTTGCTTGCA : 16256 90 : TyrAsnGluGluLeuLeuGlyIleIleArgTyrAlaLysThrAsnPheTrpHisSerAsn : 109 :::......:::...... :::||| !:!! !:!! !.!.|||! !|||:!!:!! HisLysAsnAspPhePheHisLeuIleLeuHisLeuGlnArgGluPheLeuHisAlaAsp 16257 : cacaaaaatgatttttttcatttgattcTGCACCTACAACGAGAATTCTTGCATGCAGAT : 16316 110 : TyrAspThrCysGluLysSerIleMetAsnLysCysGlnArgThrCysAsnTyrLeuVal : 129 |||||| !! !||||||!.!|||:!! ! ||||||||| !|||!.!!:!!!!||| TyrAspAspTyrGluLysLysIleLeuLeuGlyCysGlnArgGlnCysThrPhePheVal 16317 : TACGACGACTACGAGAAAAAGATTTTGCTCGGTTGCCAACGTCAATGTACCTTCTTCGTT : 16376 130 : PheValPheThrPhePheAlaGlnGlyThrValLeuGlyPheIleLeuArgProIleLeu : 149 ! ! !!||||||.!!|||.!!:!!|||||||||:!!..!!:!|||:!!!.!|||:!!:!! CysPhePheThrLeuPheThrLysGlyThrValIleSerTyrIleValAsnProLeuIle 16377 : TGTTTCTTCACACTTTTCACTAAAGGAACTGTTATCTCGTACATCGTTAATCCGCTTATT : 16436 150 : {V} >>>> Target Intron 2 >>>> {al}AsnArgGlyLysAsnGluSerAsp : 158 {!} 1386 bp {.!}||| |||||||||||||||!!: {A}++ ++{la}AsnIleGlyLysAsnGluSerGlu 16437 : {G}gt.........................ag{ca}aatattggaaaaaatgagTCAGAG : 17849 159 : ArgIleLeuProPheAsnMetTrpLeuGluLeuProLeuSerIleThrProTyrPheGlu : 178 ||||||||||||||||||||||||:!!.!.||||||||||||!!:|||||||||!:!||| ArgIleLeuProPheAsnMetTrpValAsnLeuProLeuSerMetThrProTyrTyrGlu 17850 : AGGATACTTCCATTTAATATGTGGGTCAACTTGCCATTATCAATGACGCCATATTACgaa : 17909 179 : ValMetPhePheValGln >>>> Target Intron 3 >>>> ValValPheValT : 189 ::: ||| :::||| 128 bp :!!! ! ! !| IleThrPheSerLeuGln++ +-IleGlyValSerT 17910 : ataactttttcattaCAGgt.........................atATTGGCGTGAGTT : 18070 190 : yrHisValCysValCysTyrHisCysPheAspSerLeuLeuCysIleLeuAsnLeuHisT : 209 || ! ::: |||..! !:!|||! !... ! !.!.!!!!... yrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgV 18071 : ATTTCTgcttcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAG : 18130 210 : hrAlaSerGlnPheArgIleLeuGlnHisArgPheAlaAsnThrCysAsnGluLysArgG : 229 .! !..! ! ! ! !..! ! !!!. !::: ...::::::|||. alLeuGlnTyrArgMetAlaAsnMetThrAspLeuLysAspLysGluArgLysGluArgA 18131 : TATTGCAATACCGAATGGCGAATATGACCGATTTAAAGGacaaagagaggaaagagagaa : 18190 230 : lyLysArgAspGluAspGluGluSerAlaLeuSerPheTyrGluTyrSerLysLeuLysA : 249 .. ::! ...! .....!:!!..!!!!:!! ! |||!:! ||||||! snMetLysThrSerValSerSerAlaCysPheAlaThrGluCysTyrAsnValLeuLysA 18191 : atatgaAGACAAGTGTGAGTTCGGCGTGCTTTGCAACAGAATGTTACAACGTTCTCAAAG : 18250 250 : laTyrIleArgGlnHisGlnAlaLeuIleGluTyrCysLysLysLeuGluGlnValPheA : 269 !|||||||||||||||||| !||||||! ||||||!!.|||||||||:!!||||||| spTyrIleArgGlnHisGlnAsnLeuIleAlaTyrCysAsnLysLeuGluLysValPheA 18251 : ATTATATCAGACAGCATCAGAACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGTTCA : 18310 270 : snSerIleValPheGlyGlnValLeuLeuPheSerLeuLeuMetCysLeuAspGlyTyrL : 289 ||! !||||||.!.||||||:!!|||:!!||||||:!!|||!!:||||||||||||!:!! snIleIleValLeuGlyGlnLeuLeuMetPheSerMetLeuIleCysLeuAspGlyPheG 18311 : ATATCATTGTTCTGGGGCAATTGTTAATGTTCAGCATGTTGATCTGTCTCGATGGATTTC : 18370 290 : euIleLeuMet >>>> Target Intron 4 >>>> GluGluThrProPheGlyAr : 299 !||||||||| 975 bp ! !.!.|||||| ! !!! lnIleLeuMet++ ++AlaAsnThrProThrArgTh 18371 : AGATACTTATGgt.........................agGCAAATACACCTACCAGAAC : 19375 300 : gArgValThrPheThrPheHisIleThrGlyCysMetCysGlnLeuLeuMetPheThrTy : 319 !|||:!!! !|||! !||||||||| !!.!||||||||||||||||||||||||||||| rArgLeuIlePheIlePheHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTy 19376 : CCGACTGATTTTCATCTTTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTA : 19435 320 : rSerCysAspCysLeuIleArgAspSerMetAspIleAlaAspAlaAlaTyrAsnCysSe : 339 |||||||||||||:!!||||||!!:|||! !..!! !|||!!:|||!.!|||!:! !! ! rSerCysAspCysIleIleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyPr 19436 : CAGCTGCGACTGCATCATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCC : 19495 340 : rTrpSerPheLeuProMetAspLysTyrGlyLysMetIleArgArgAspLeuMetPheVa : 359 !|||!!!.!!|||||||||..! ! !!|||||||||||||||!:!|||||||||.!!|| oTrpThrLeuLeuProMetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuVa 19496 : CTGGACACTTTTACCAATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGT : 19555 360 : lIleThrArgSerArgThrProCysCysLeuThrAlaCysGlyPhePheAlaValSerLe : 379 ||||! !||||||!!!..!|||||||||||||||||| ! |||||||||!.!|||||||| lIleMetArgSerSerValProCysCysLeuThrAlaArgGlyPhePheValValSerLe 19556 : TATCATGAGATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTT : 19615 380 : uGluThrTyrThr{L} >>>> Target Intron 5 >>>> {ys}ValLeuSerTh : 388 |||||||||||||{:} 223 bp {!!}||||||||||| uGluThrTyrThr{G}+- +-{lu}ValLeuSerTh 19616 : AGAAACGTACACA{G}gg.........................ac{AG}GTTTTAAGCAC : 19865 389 : rAlaIleSerIlePheThrIleLeuLysArg : 398 |||| !||| !||||||:!:||||||!:! rAlaAlaSerTyrPheThrLeuLeuLysGln 19866 : CGCAGCCTCATACTTTACGTTGCTGAAGCAA : 19897 vulgar: AmOr76 0 398 . KQ414828.1 15100 19897 + 886 M 64 192 S 0 1 5 0 2 I 0 887 3 0 2 S 1 2 M 84 252 S 0 1 5 0 2 I 0 1382 3 0 2 S 1 2 M 34 102 5 0 2 I 0 124 3 0 2 M 108 324 5 0 2 I 0 971 3 0 2 M 91 273 S 0 1 5 0 2 I 0 219 3 0 2 S 1 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15101 19897 886 + . gene_id 2 ; sequence AmOr76 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 15101 15293 . + . KQ414828.1 exonerate:protein2genome:local exon 15101 15293 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 15294 15295 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 15294 16184 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 16183 16184 . + . intron_id 0 ; splice_site "GC" KQ414828.1 exonerate:protein2genome:local cds 16185 16439 . + . KQ414828.1 exonerate:protein2genome:local exon 16185 16439 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 16440 16441 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 16440 17825 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 17824 17825 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 17826 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17826 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18057 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 18056 18057 . + . intron_id 2 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local cds 18058 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18058 18381 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19630 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19630 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19631 19632 . + . intron_id 5 ; splice_site "GG" KQ414828.1 exonerate:protein2genome:local intron 19631 19853 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 19852 19853 . + . intron_id 4 ; splice_site "AC" KQ414828.1 exonerate:protein2genome:local cds 19854 19897 . + . KQ414828.1 exonerate:protein2genome:local exon 19854 19897 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15101 19897 886 + . alignment_id 2 ; Query AmOr76 ; Align 15101 1 192 ; Align 16187 66 252 ; Align 17828 151 102 ; Align 18058 185 324 ; Align 19357 293 273 ; Align 19856 385 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 591 Query range: 147 -> 385 Target range: 32386 -> 33822 148 : IleLeuValAsnArgGlyLysAsnGluSerAspArgIleLeuProPheAsnMetTrpLeu : 167 ||||||...|||! !||||||||||||||||||||| !! ! !!:!:!!||||||||| IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 32387 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 32444 168 : GluLeuProLeuSerIleThrProTyrPheGluValMetPhePheValGln >>>> Ta : 185 !!:||||||||||||:!!|||||||||:::|||::: ::!.!.:!!||| AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGln++ 32445 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGgt....... : 32500 186 : rget Intron 1 >>>> ValValPheValTyrHisValCysValCysTyrHisCysP : 198 307 bp !.!:!!! !||||||!!.||| ! |||||||||! !|||| ++AlaLeuSerValTyrGlnValGlyValCysTyrLeuCysP 32501 : ..................agGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCT : 32844 199 : heAspSerLeuLeuCysIleLeuAsnLeuHisThrAlaSerGlnPheArgIleLeuGlnH : 218 |||||::::::... |||::: !||||||..!|||.!!||||||||||||||||||: heAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnT 32845 : ttgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAAT : 32904 219 : isArgPheAlaAsnThrCysAsnGluLysArgGlyLysArgAspGluAspGluGluSerA : 238 !!|||.!!||||||..!! ..! !!....! ! !!:!..!.!.|||.!. !|||. yrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerAsnAspAsnThrSerT 32905 : ACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACAAGCA : 32964 239 : laLeuSerPheTyrGlu<-><-><->TyrSerLysLeuLysAlaTyrIleArgGlnHisG : 255 !! !..!!!.|||..! |||! !|||!!!||| !! !|||!:!||||||| hrAlaGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisG 32965 : CGGCTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATC : 33024 256 : lnAlaLeuIleGluTyrCysLysLysLeuGluGlnValPheAsnSerIleValPheGlyG : 275 ||||||||||||||:::|||::: ||||||:!!||||||!.. !||||||.!!|||| lnAlaLeuIleGluPheCysGluIleLeuGluGluValPheThrValIleValLeuGlyG 33025 : AGGCACTaattgaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGAC : 33084 276 : lnValLeuLeuPheSerLeuLeuMetCysLeuAspGlyTyrLeuIleLeuMet >>>> : 293 ||||||||:!!||||||:!!:!!!!:|||!!!! !|||||| !:!!|||:!! lnValLeuMetPheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeu++ 33085 : AAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGgt..... : 33140 294 : Target Intron 2 >>>> GluGluThrProPheGlyArgArgValThrPheThrPh : 305 406 bp ! ! !||||||! ! !||||||.!!||||||! ++IleThrLeuProPheGluSerArgValAlaPheThrCy 33141 : ....................agATAACGTTACCATTTGAATCGCGCGTTGCTTTCACGTG : 33580 306 : eHisIleThrGlyCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIl : 325 ! !:!:! ! ! !!:!! !!||||||! !||||||||||||||||||:!!|||:!!! sPheLeuIleThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAsnCysIleTh 33581 : CTTCTTGATTACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCAATTGCATAAC : 33640 326 : eArgAspSerMetAspIleAlaAspAlaAlaTyrAsnCysSerTrpSerPheLeuProMe : 345 !! !!!:|||:!!:!!||||||!!::!!!.!||| ! ! !!|||! ! !|||||||| rThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMe 33641 : AACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAAT : 33700 346 : tAspLysTyrGlyLysMetIleArgArgAspLeuMetPheValIleThrArgSerArgTh : 365 |||||||:::||||||::::!!|||!:!||||||... ! :!!||| !|||:!!||| tAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgAr 33701 : ggataaatttggaaaactgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGAGACG : 33760 366 : rProCysCysLeuThrAlaCysGlyPhePheAlaValSerLeuGluThrTyrThrLysVa : 385 !|||! !..!|||||||||||||||||||||:!!:!!!!!|||||||||!:!|||||||| gProSerAlaLeuThrAlaCysGlyPhePheSerIleThrLeuGluThrPheThrLysVa 33761 : ACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTACTAAGGt : 33820 386 : l : 385 | l 33821 : a : 33822 vulgar: AmOr76 147 385 . KQ414828.1 32386 33822 + 591 M 37 111 5 0 2 I 0 303 3 0 2 M 59 177 G 0 9 M 49 147 5 0 2 I 0 402 3 0 2 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32387 33822 591 + . gene_id 3 ; sequence AmOr76 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32387 32497 . + . KQ414828.1 exonerate:protein2genome:local exon 32387 32497 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32498 32499 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32498 32804 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32803 32804 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32805 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32805 33137 . + . insertions 9 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33822 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33822 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32387 33822 591 + . alignment_id 3 ; Query AmOr76 ; Align 32387 148 111 ; Align 32805 185 177 ; Align 32991 244 147 ; Align 33544 293 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 456 Query range: 147 -> 385 Target range: 22307 -> 23829 148 : IleLeuValAsnArgGlyLysAsnGluSerAspArgIleLeuProPheAsnMetTrpLeu : 167 ||||||...|||! !||||||||||||||||||||| !! ! !!:!:!!||||||||| IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 22308 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 22365 168 : GluLeuProLeuSerIleThrProTyrPheGluValMetPhe >>>> Target Intr : 182 !!:||||||||||||:!!|||||||||:::|||::: ::! 316 bp AspLeuProLeuSerValThrProTyrTyrGluIleThrTyr-+ 22366 : GATCTACCATTATCCGTAACAccatattatgaaattacttACat................ : 22412 183 : on 1 >>>> PheValGlnValValPheValTyrHisValCysValCysTyrHisCysP : 198 !:!!...||| ! ||| ! !! !:!!||| | ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCys---------P 22413 : .........agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGC---------t : 22765 199 : heAspSerLeuLeuCysIleLeuAsnLeuHisThrAlaSerGlnPheArgIleLeuGlnH : 218 ||||| :::... |||||| ||||||..!|||.!!||||||||||||||||||: heAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnT 22766 : ttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAAT : 22825 219 : isArgPheAlaAsnThrCysAsnGluLysArgGlyLysArgAspGluAspGluGluSerA : 238 !!|||.!!||||||..!! ..! !!....! ! !!:!..!...!!:.!. !|||. yrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSerT 22826 : ACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCA : 22885 239 : laLeuSerPheTyrGlu<-><-><->TyrSerLysLeuLysAlaTyrIleArgGlnHisG : 255 !! !..!!!.|||..! |||! !|||!!!||| !! !|||!:!||||||| hrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisG 22886 : CAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATC : 22945 256 : lnAlaLeuIleGluTyrCysLysLysLeuGluGlnValPheAsnSerIleValPheGlyG : 275 ||||||||||||||!:!||| !! !||||||:!!||||||!.. !||||||.!!|||| lnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleValLeuGlyG 22946 : AGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGAC : 23005 276 : lnValLeuLeuPheSerLeuLeuMetCysLeuAspGlyTyrLeuIleLeuMetGluGluT : 295 ||||||||:!!! !|||:!!|||!!:|||!!! !||||||! !:!!|||:!!! !...! lnValLeuMetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeuValSerI 23006 : AAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGGTGAGTA : 23065 296 : hrProPheGlyArgArgVal{T} >>>> Target Intron 2 >>>> {hr}PheT : 304 ! ! ! !!.!!:! !{:} 492 bp {!!}|||. leGluSerTyrAsnLysTyr{S}++ -+{er}PheA 23066 : TCGAAAGCTATAATAAATAC{T}gt.........................tg{CT}TTCG : 23584 305 : hrPheHisIleThrGlyCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysL : 324 !!! ! !:!:! ! ! !!||| !!||||||! !||||||||||||||||||||||||: laCysPheLeuMetMetGlyMetSerGlnLeuTrpMetPheThrTyrSerCysAspCysI 23585 : CGTGCTTCTTGATGATGGGCATGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCA : 23644 325 : euIleArgAspSerMetAspIleAlaAspAlaAlaTyrAsnCysSerTrpSerPheLeuP : 344 !!! !! !!!:|||:!!:!!||||||!!::!!!.!||| ! ! !!|||! ! !|||| leThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuP 23645 : TAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTAC : 23704 345 : roMetAspLysTyrGlyLysMetIleArgArgAspLeuMetPheValIleThrArgSerA : 364 |||||||||||!:!||||||:!!:!!|||!:!!!:|||....!.:!!||| !|||:!!| roMetAspLysPheGlyLysLeuLeuArgLysGluLeuGlnMetLeuIleLeuArgAlaA 23705 : CAATGGACAAATTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGGGCGA : 23764 365 : rgThrProCysCysLeuThrAlaCysGlyPhePheAlaValSerLeuGluThrTyrThrL : 384 || !|||! !..!|||||||||||||||||||||:!!:!!||||||||||||!:!|||| rgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrL 23765 : GACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTA : 23824 385 : ysVal : 385 ||||| ysVal 23825 : AGGTA : 23829 vulgar: AmOr76 147 385 . KQ414828.1 22307 23829 + 456 M 34 102 5 0 2 I 0 312 3 0 2 M 13 39 G 3 0 M 46 138 G 0 9 M 58 174 S 0 1 5 0 2 I 0 488 3 0 2 S 1 2 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22308 23829 456 + . gene_id 4 ; sequence AmOr76 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22308 22409 . + . KQ414828.1 exonerate:protein2genome:local exon 22308 22409 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22410 22411 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 22410 22725 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 23086 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 23086 . + . insertions 9 ; deletions 3 KQ414828.1 exonerate:protein2genome:local splice5 23087 23088 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23087 23578 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 23577 23578 . + . intron_id 1 ; splice_site "TG" KQ414828.1 exonerate:protein2genome:local cds 23579 23829 . + . KQ414828.1 exonerate:protein2genome:local exon 23579 23829 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22308 23829 456 + . alignment_id 4 ; Query AmOr76 ; Align 22308 148 102 ; Align 22726 182 39 ; Align 22765 198 138 ; Align 22912 244 174 ; Align 23581 303 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 252 Query range: 293 -> 387 Target range: 12472 -> 12754 294 : GluThrProPheGlyArgArgValThrPheThrPheHisIleThrGlyCysMetCysGln : 313 .!.||| !!.!!!.!|||||| !! !|||! !|||! !||| !|||..!||| ! ! AsnThrSerLeuAlaArgArgSerIlePheMetPheLeuIleCysGlyAlaMetValLeu 12473 : AATACTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTTTTA : 12530 314 : LeuLeuMetPheThrTyrSerCysAspCysLeuIleArgAspSerMetAspIleAlaAsp : 333 |||!!!||||||||||||||||||:!! :!!|||..!.!.||| :!!|||||| ! LeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAlaPhe 12531 : TTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCTTTT : 12590 334 : AlaAlaTyrAsnCysSerTrpSerPheLeuProMetAspLysTyrGlyLysMetIleArg : 353 |||||||||:::... !|||!!! !:!!||||||:!!||| !||||||! !:!!||| AlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeuArg 12591 : GCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTACGG : 12650 354 : ArgAspLeuMetPheValIleThrArgSerArgThrProCysCysLeuThrAlaCysGly : 373 !.!||||||!!:.!.|||||| !||||||||| ! !||||||||||||||| !||| HisAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsnGly 12651 : CATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATGGA : 12710 374 : PhePheAlaValSerLeuGluThrTyrThrLysValLeuSer : 387 |||||| !!|||||||||||||||||||||! !||| !||| PhePheProValSerLeuGluThrTyrThrThrValSerSer 12711 : TTTTTCCCTGTGTCCTTAGAAACTTATACTACGGTGAGTTCA : 12754 vulgar: AmOr76 293 387 . KQ414828.1 12472 12754 + 252 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 12473 12754 252 + . gene_id 5 ; sequence AmOr76 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 12473 12754 . + . KQ414828.1 exonerate:protein2genome:local exon 12473 12754 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 12473 12754 252 + . alignment_id 5 ; Query AmOr76 ; Align 12473 294 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 244 Query range: 285 -> 385 Target range: 28484 -> 28784 286 : AspGlyTyrLeuIleLeuMetGluGluThrProPheGlyArgArgValThrPheThrPhe : 305 ||| !||| ! ! !..!.!.:!! ! !!|||! ! !!||||||.!!!!..!!! ! AspMetTyrAsnGlyThrGlnAsnLysLeuSerPheGluTrpArgValAlaLeuAlaCys 28485 : GATATGTATAATGGCACACAGAATAAGTTATCATTTGAATGGCGCGTTGCTTTGGCGTGC : 28542 306 : HisIleThrGlyCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIle : 325 ! ! ! ! !!:!! !!||||||! !||||||||||||||||||||||||:!!! ! PheSerMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThr 28543 : TTCTCGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACA : 28602 326 : ArgAspSerMetAspIleAlaAspAlaAlaTyrAsnCysSerTrpSerPheLeuProMet : 345 ! !!!:|||:!!:!!||||||!!::!!!.!||| ! ! !!|||! ! !||||||||| ThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMet 28603 : ACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATg : 28662 346 : AspLysTyrGlyLysMetIleArgArgAspLeuMetPheValIleThrArgSerArgThr : 365 ||||||:::||||||::::!!|||!:!||||||... ! :!!||| !|||:!!||| ! AspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArg 28663 : gataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGA : 28722 366 : ProCysCysLeuThrAlaCysGlyPhePheAlaValSerLeuGluThrTyrThrLysVal : 385 |||! !! !|||||||||||||||||||||:!!:!!||||||||||||!:!||||||||| ProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 28723 : CCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 28782 vulgar: AmOr76 285 385 . KQ414828.1 28484 28784 + 244 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28485 28784 244 + . gene_id 6 ; sequence AmOr76 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28485 28784 . + . KQ414828.1 exonerate:protein2genome:local exon 28485 28784 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28485 28784 244 + . alignment_id 6 ; Query AmOr76 ; Align 28485 286 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 244 Query range: 310 -> 385 Target range: 38535 -> 38760 311 : MetCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgAspSerMetAsp : 330 :!! !!||||||! !||||||||||||||||||||||||:!!! !! !!!:|||:!!:!! ValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsn 38536 : GTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAAC : 38593 331 : IleAlaAspAlaAlaTyrAsnCysSerTrpSerPheLeuProMetAspLysTyrGlyLys : 350 ||||||!!::!!!.!||| ! ! !!|||! ! !|||||||||||||||:::|||||| IleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLys 38594 : ATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaa : 38653 351 : MetIleArgArgAspLeuMetPheValIleThrArgSerArgThrProCysCysLeuThr : 370 ::::!!|||!:!||||||... ! :!!||| !|||:!!||| !|||! !! !|||||| LeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThr 38654 : ctgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACT : 38713 371 : AlaCysGlyPhePheAlaValSerLeuGluThrTyrThrLysVal : 385 |||||||||||||||:!!:!!||||||||||||!:!||||||||| AlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 38714 : GCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 38760 vulgar: AmOr76 310 385 . KQ414828.1 38535 38760 + 244 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38536 38760 244 + . gene_id 7 ; sequence AmOr76 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38536 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38536 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38536 38760 244 + . alignment_id 7 ; Query AmOr76 ; Align 38536 311 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 239 Query range: 187 -> 292 Target range: 10840 -> 11164 188 : ValTyrHisValCysValCysTyrHisCysPheAspSerLeuLeuCysIleLeuAsnLeu : 207 :!!||| !..! ! :!!|||||| !|||||||||!:!:!!!!!||||||:!!!:!:!! LeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerVal 10841 : CTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTG : 10898 208 : HisThrAlaSerGlnPheArgIleLeuGlnHisArgPheAlaAsnThrCysAsnGluLys : 227 ||| !::!.!!||||||||||||||||||:!!|||!!..!!!!. !! !:!!! !:!! HisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGln 10899 : CATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAA : 10958 228 : ArgGlyLysArgAspGluAspGluGluSerAlaLeu<-><-><->SerPheTyrGluTyr : 244 ! !! !! ::::::::: ||||||!.!||| !!! ! ...||| TyrGlnIleSerGluLysAsnMetGluSerValLeuGluAspCysThrArgArgSerTyr 10959 : TATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGTAGATCTTAC : 11018 245 : SerLysLeuLysAlaTyrIleArgGlnHisGlnAlaLeuIleGluTyrCysLysLysLeu : 264 ..!|||!!!|||::!|||:!!||||||||||||.!!||||||!!:|||! !:!!|||||| GluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLysLeu 11019 : GAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAGCTT : 11078 265 : GluGlnValPheAsnSerIleValPheGlyGlnValLeuLeuPheSerLeuLeuMetCys : 284 |||!!.|||!:!!..!.!|||:!!.!!|||||||||||||||||||||:!!|||!!:||| GluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIleCys 11079 : GAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATTTGC : 11138 285 : LeuAspGlyTyrLeuIleLeuMet : 292 ||| !||||||! !||||||:!! LeuPheGlyTyrGlnIleLeuLeu 11139 : CTCTTTGGTTATCAGATATTATTG : 11164 vulgar: AmOr76 187 292 . KQ414828.1 10840 11164 + 239 M 52 156 G 0 9 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10841 11164 239 + . gene_id 8 ; sequence AmOr76 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 10841 11164 . + . KQ414828.1 exonerate:protein2genome:local exon 10841 11164 . + . insertions 9 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10841 11164 239 + . alignment_id 8 ; Query AmOr76 ; Align 10841 188 156 ; Align 11006 240 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 218 Query range: 181 -> 292 Target range: 37859 -> 38201 182 : PheValGlnValValPheValTyrHisValCysValCysTyrHisCysPheAspSerLeu : 201 ..!..!|||!.!:!!! !||||||!!.||| !!!.!||||||! !||||||||| ::: LeuThrGlnAlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIle 37860 : ctCACGCAGGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatt : 37917 202 : LeuCysIleLeuAsnLeuHisThrAlaSerGlnPheArgIleLeuGlnHisArgPheAla : 221 ... |||||| ||||||..!|||.!!||||||||||||||||||:!!|||.!!||| PhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAla 37918 : tttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCC : 37977 222 : AsnThrCysAsnGluLysArgGlyLysArgAspGluAspGluGluSerAlaLeuSerPhe : 241 |||..!! ..! !!....! ! !!:!..!...!!:.!. !|||.!! !..!!!. AsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSerThrAspGluLeu 37978 : AATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAATTA : 38037 242 : TyrGlu<-><-><->TyrSerLysLeuLysAlaTyrIleArgGlnHisGlnAlaLeuIle : 258 |||..! |||! !|||!!!||| !! !|||!:!|||||||||||||||||| TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 38038 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATT : 38097 259 : GluTyrCysLysLysLeuGluGlnValPheAsnSerIleValPheGlyGlnValLeuLeu : 278 |||!:!||| !! !||||||:!!||||||!.. !|||!.!.!!||||||||||||:!! GluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnValLeuMet 38098 : GAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCTAATG : 38157 279 : PheSerLeuLeuMetCysLeuAspGlyTyrLeuIleLeuMet : 292 ||||||:!!|||!!:|||!!!! !! !|||! ! !|||:!! PheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeu 38158 : TTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTG : 38201 vulgar: AmOr76 181 292 . KQ414828.1 37859 38201 + 218 M 62 186 G 0 9 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37860 38201 218 + . gene_id 9 ; sequence AmOr76 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37860 38201 . + . KQ414828.1 exonerate:protein2genome:local exon 37860 38201 . + . insertions 9 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37860 38201 218 + . alignment_id 9 ; Query AmOr76 ; Align 37860 182 186 ; Align 38055 244 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 0 -> 67 Target range: 21030 -> 21231 1 : MetLysSerLysGluValArgAspLeuSerIleThrValThrAlaPheTyrMetLysIle : 20 |||!..! !||| ! !!:!|||:!!|||:!!! !:!!.!! !||||||:!! ! :!! MetSerLeuLysTyrArgGlnAspValSerValArgLeuAlaAsnPheTyrLeuTyrVal 21031 : ATGAGCTTGAAATATCGCCAAGACGTTTCCGTTAGATTAGCCAATTTTTATCTGTATGTC : 21088 21 : AlaGlyPheTrpThrSerThrAsnTyrValGluGluArgArgArgAsnValThrMetSer : 40 !.!||||||||| !:!!.!!||| !:!!|||||| !! ! !!|||!.!.!!!!: ! ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheGlyAsnAlaAlaIleLeu 21089 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCGGAAACGCGGCGATTCTG : 21148 41 : TyrThrLeuPheAlaIleLeuPheAlaAlaThrThrGluAlaArgAspLeuTyrPheSer : 60 ||||||:!! !!.!!:!!!!!|||!.! ! ! !:!! !|||! |||||||||||| TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSer 21149 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGACTTTATTTCTCC : 21208 61 : TrpGlyAsnPheSerAspSer : 67 ||||||||||||..!! ||| TrpGlyAsnPheGluValSer 21209 : TGGGGAAACTTTGAAGTAAGT : 21231 vulgar: AmOr76 0 67 . KQ414828.1 21030 21231 + 142 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21031 21231 142 + . gene_id 10 ; sequence AmOr76 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 21031 21231 . + . KQ414828.1 exonerate:protein2genome:local exon 21031 21231 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21031 21231 142 + . alignment_id 10 ; Query AmOr76 ; Align 21031 1 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 0 -> 67 Target range: 31105 -> 31306 1 : MetLysSerLysGluValArgAspLeuSerIleThrValThrAlaPheTyrMetLysIle : 20 |||!..! !||| ! !!:!|||:!!|||.!!! !:!!.!! !|||!:!:!! ! :!! MetSerLeuLysTyrArgGlnAspValSerPheArgLeuAlaAsnPhePheLeuTyrVal 31106 : ATGAGCTTGAAATATCGTCAAGACGTTTCCTTTAGATTAGCCAACTTTTTTCTGTATGTT : 31163 21 : AlaGlyPheTrpThrSerThrAsnTyrValGluGluArgArgArgAsnValThrMetSer : 40 !.!||||||||| !:!!.!!||| !:!!|||||| !! !||||||!.!.!!!!: ! ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeu 31164 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCTGCGATTCTG : 31223 41 : TyrThrLeuPheAlaIleLeuPheAlaAlaThrThrGluAlaArgAspLeuTyrPheSer : 60 ||||||:!! !!.!!:!!!!!|||!.! ! ! !:!! !|||! |||||||||||| TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSer 31224 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGGCTTTATTTCTCC : 31283 61 : TrpGlyAsnPheSerAspSer : 67 ||||||||||||..!! ||| TrpGlyAsnPheGluValSer 31284 : TGGGGAAACTTTGAAGTAAGT : 31306 vulgar: AmOr76 0 67 . KQ414828.1 31105 31306 + 142 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31106 31306 142 + . gene_id 11 ; sequence AmOr76 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 31106 31306 . + . KQ414828.1 exonerate:protein2genome:local exon 31106 31306 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31106 31306 142 + . alignment_id 11 ; Query AmOr76 ; Align 31106 1 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 0 -> 67 Target range: 26060 -> 26261 1 : MetLysSerLysGluValArgAspLeuSerIleThrValThrAlaPheTyrMetLysIle : 20 |||!..! !||| ! !!:!|||:!!|||:!!! !:!!.!! !|||!:!:!! ! :!! MetSerLeuLysTyrArgGlnAspValSerValArgLeuAlaAsnPhePheLeuTyrVal 26061 : ATGAGCTTGAAATATCGTCAAGACGTTTCCGTTAGATTAGCCAACTTTTTTCTGTATGTC : 26118 21 : AlaGlyPheTrpThrSerThrAsnTyrValGluGluArgArgArgAsnValThrMetSer : 40 !.!||||||||| !:!!.!!||| !:!!|||||| !! !||||||!.!.!!!!: ! ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeu 26119 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCGGCGATTCTG : 26178 41 : TyrThrLeuPheAlaIleLeuPheAlaAlaThrThrGluAlaArgAspLeuTyrPheSer : 60 ||||||:!! !!.!!:!!!!!|||!.! ! ! !:!! ! !!! |||||||||:!! TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuGlyGlyLeuTyrPheAla 26179 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGGGAGGGCTTTATTTCGCC : 26238 61 : TrpGlyAsnPheSerAspSer : 67 ||||||||||||..!! ||| TrpGlyAsnPheGluValSer 26239 : TGGGGAAACTTTGAAGTAAGT : 26261 vulgar: AmOr76 0 67 . KQ414828.1 26060 26261 + 135 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26061 26261 135 + . gene_id 12 ; sequence AmOr76 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 26061 26261 . + . KQ414828.1 exonerate:protein2genome:local exon 26061 26261 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 26061 26261 135 + . alignment_id 12 ; Query AmOr76 ; Align 26061 1 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 147 -> 189 Target range: 27339 -> 27465 148 : IleLeuValAsnArgGlyLysAsnGluSerAspArgIleLeuProPheAsnMetTrpLeu : 167 ||||||...|||! !||||||||||||||||||||| !! ! !|||:!!||||||!!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPhe 27340 : attttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTC : 27397 168 : GluLeuProLeuSerIleThrProTyrPheGluValMetPhePheValGlnValValPhe : 187 !!:||||||||||||:!!|||||||||:::|||::: ::!.!.:!!||||||:!! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 27398 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 27457 188 : ValTyr : 189 :!!!:! IlePhe 27458 : ATTTTC : 27465 vulgar: AmOr76 147 189 . KQ414828.1 27339 27465 + 134 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27340 27465 134 + . gene_id 13 ; sequence AmOr76 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27340 27465 . + . KQ414828.1 exonerate:protein2genome:local exon 27340 27465 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27340 27465 134 + . alignment_id 13 ; Query AmOr76 ; Align 27340 148 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 147 -> 189 Target range: 37450 -> 37576 148 : IleLeuValAsnArgGlyLysAsnGluSerAspArgIleLeuProPheAsnMetTrpLeu : 167 ||| ...|||! !||||||||||||||||||||| !! ! !!:!:!!||||||||| IleSerAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 37451 : atttcagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 37508 168 : GluLeuProLeuSerIleThrProTyrPheGluValMetPhePheValGlnValValPhe : 187 !!:||||||||||||||||||||||||:::|||::: ::!.!.:!!||||||:!! AspLeuProLeuSerIleThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 37509 : GATCTACCATTATCCATAACAccatattatgaaattacttACATAATACAGGTATTACCA : 37568 188 : ValTyr : 189 :!!!:! IlePhe 37569 : ATTTTC : 37576 vulgar: AmOr76 147 189 . KQ414828.1 37450 37576 + 130 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37451 37576 130 + . gene_id 14 ; sequence AmOr76 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37451 37576 . + . KQ414828.1 exonerate:protein2genome:local exon 37451 37576 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37451 37576 130 + . alignment_id 14 ; Query AmOr76 ; Align 37451 148 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 400 Query range: 235 -> 399 Target range: 18219 -> 19909 236 : TyrAlaSerLysCysTyrGluAlaLeuLysGluCysIleArgGlnHisGlnSerLeuIle : 255 !:!|||!!!:!!||||||.!.!.!||||||!!:! !|||||||||||||||!:!|||||| PheAlaThrGluCysTyrAsnValLeuLysAspTyrIleArgGlnHisGlnAsnLeuIle 18220 : TTTGCAACAGAATGTTACAACGTTCTCAAAGATTATATCAGACAGCATCAGAACCTGATT : 18277 256 : GluPheCysAspLysLeuGluHisValTyrThrLeuProIlePheGlyHisValValVal : 275 ! !:!|||:!!||||||||| ! |||!:!!.!:!! !:!!.!.|||!!.:!!:!!:!! AlaTyrCysAsnLysLeuGluLysValPheAsnIleIleValLeuGlyGlnLeuLeuMet 18278 : GCTTATTGCAACAAACTCGAGAAAGTGTTCAATATCATTGTTCTGGGGCAATTGTTAATG : 18337 276 : PheSerLeuLeuMetCysPheAspThrTyrGluIlePheLeu >>>> Target Intr : 290 ||||||:!!|||!!:|||.!!||| !!:!:!!|||.!!:!! 975 bp PheSerMetLeuIleCysLeuAspGlyPheGlnIleLeuMet++ 18338 : TTCAGCATGTTGATCTGTCTCGATGGATTTCAGATACTTATGgt................ : 18384 291 : on 1 >>>> AlaAsnValProValSerMetArgLeuIlePhePhePheHisMetValG : 306 ||||||..!|||..!!!!! ||||||||||||.!!||||||!!:! !! ++AlaAsnThrProThrArgThrArgLeuIlePheIlePheHisIleGlyA 18385 : .........agGCAAATACACCTACCAGAACCCGACTGATTTTCATCTTTCACATAGGAG : 19405 307 : lySerPheIleHisIleIlePhePheThrTyrIleCysGlyGlyLeuIleGluGluSerS : 326 .!!!!.!. !!!.:!::!:.!.|||||||||! !|||! ! !!:!!|||..!||||||! laCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSerT 19406 : CATGCATGTGTCAATTGCTGATGTTTACCTACAGCTGCGACTGCATCATAAGAGAAAGCA : 19465 327 : erAsnIleGlyLeuAlaThrTyrSerGlyTrpTrpThrValLeuProMetAspGluAlaG : 346 !!!:!! !!.! !|||..!||||||||| ||||||:!!|||||||||..!! !! !| hrSerThrAlaGluAlaValTyrSerGlyProTrpThrLeuLeuProMetSerAlaAspG 19466 : CGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGACACTTTTACCAATGAGCGCAGACG : 19525 347 : lyArgMetLeuArgGluAspValLysValMetIleMetLysSerMetArgProCysHisL : 366 ||!:!|||:!!|||:!!|||:!!! !:!!:!:||||||!:!|||! !|||||| !| lyLysMetIleArgLysAspLeuMetLeuValIleMetArgSerSerValProCysCysL 19526 : GAAAAATGATAAGGAAAGATTTGATGCTCGTTATCATGAGATCGAGCGTACCTTGTTGCT : 19585 367 : euSerAlaGlyGlyPhePheProValSerLeuGluThrSerThrAla >>>> Target : 382 ||!!!||| !!||||||||| !|||||||||||||||! !|||!.! 2 euThrAlaArgGlyPhePheValValSerLeuGluThrTyrThrGly++ 19586 : TGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAACGTACACAGGGgt........... : 19635 383 : Intron 2 >>>> LeuMetSerSerThrLeuSerTyrPheThrLeuMetArgGluSe : 396 23 bp :!!:!:|||!!!.!! !|||||||||||||||:!!!:!:!!!! ++ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuLysGlnAr 19636 : ..............agGTTTTAAGCACCGCAGCCTCATACTTTACGTTGCTGAAGCAAAG : 19898 397 : rSerLysAsp : 399 !|||:!!:!! gSerGluAsn 19899 : ATCAGAGAAT : 19909 vulgar: AmOr86 235 399 . KQ414828.1 18219 19909 + 400 M 54 162 5 0 2 I 0 971 3 0 2 M 92 276 5 0 2 I 0 219 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 18220 19909 400 + . gene_id 1 ; sequence AmOr86 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 18220 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18220 18381 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19909 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19909 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 18220 19909 400 + . alignment_id 1 ; Query AmOr86 ; Align 18220 236 162 ; Align 19357 290 276 ; Align 19856 382 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 395 Query range: 238 -> 399 Target range: 11011 -> 13158 239 : LysCysTyrGluAlaLeuLysGluCysIleArgGlnHisGlnSerLeuIleGluPheCys : 258 !:!! !|||||| !!!!|||...! !:!!||||||||||||!!!||||||!!:!:!! ! ArgSerTyrGluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyr 11012 : AGATCTTACGAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTAC : 11069 259 : AspLysLeuGluHisValTyrThrLeuProIlePheGlyHisValValValPheSerLeu : 278 !!:||||||||||||||||||||| ! !|||.!!|||!!.|||:!!:!!||||||:!! GluLysLeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerVal 11070 : GAGAAGCTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTG : 11129 279 : LeuMetCysPheAspThrTyrGluIlePheLeu >>>> Target Intron 1 >>>> : 290 |||!!:|||.!! ! !|||:!!|||!!.||| 1305 bp LeuIleCysLeuPheGlyTyrGlnIleLeuLeu++ 11130 : TTAATTTGCCTCTTTGGTTATCAGATATTATTGgt......................... : 11167 291 : AlaAsnValProValSerMetArgLeuIlePhePhePheHisMetValGlySerPheI : 309 ||||||..! !!:!!:!!! !||| !||||||.!.|||! !!!: !|||:!!.!.: ++AlaAsnThrSerLeuAlaArgArgSerIlePheMetPheLeuIleCysGlyAlaMetV 11168 : agGCTAATACTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGG : 12527 310 : leHisIleIlePhePheThrTyrIleCysGlyGlyLeuIleGluGluSerSerAsnIleG : 329 !! :!:.!!.!.|||||||||! !|||..! !:!!||||||:!!|||..!||||||! alLeuLeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleA 12528 : TTTTATTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTG : 12587 330 : lyLeuAlaThrTyrSerGlyTrpTrpThrValLeuProMetAspGluAlaGlyArgMetL : 349 .!!!!|||.!!||||||!.! ||||||! !:!!||||||:!!:!!.!!|||!:!! !| laPheAlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysL 12588 : CTTTTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGC : 12647 350 : euArgGluAspValLysValMetIleMetLysSerMetArgProCysHisLeuSerAlaG : 369 |||||.!.|||:!!! !:!!:!:||| !!:!|||! ||| !||| !|||!!!|||. euArgHisAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaA 12648 : TACGGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGA : 12707 370 : lyGlyPhePheProValSerLeuGluThrSerThrAla >>>> Target Intron 2 : 382 .!|||||||||||||||||||||||||||! !|||.!! 359 bp snGlyPhePheProValSerLeuGluThrTyrThrThr++ 12708 : ATGGATTTTTCCCTGTGTCCTTAGAAACTTATACTACGgt.................... : 12748 383 : >>>> LeuMetSerSerThrLeuSerTyrPheThrLeuMetArgGluSerSerLysAs : 399 ::::::|||!!!.!! !|||||||||||||||:!!|||.!.!:! !:!!|| ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnValGluAs 12749 : .....agattttgAGTACCGCGGCGTCGTACTTCACATTATTGAGAAATAACGTAGAAGA : 13156 400 : p : 399 | p 13157 : T : 13158 vulgar: AmOr86 238 399 . KQ414828.1 11011 13158 + 395 M 51 153 5 0 2 I 0 1301 3 0 2 M 92 276 5 0 2 I 0 355 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 11012 13158 395 + . gene_id 2 ; sequence AmOr86 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 11012 11164 . + . KQ414828.1 exonerate:protein2genome:local exon 11012 11164 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 11165 11166 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 11165 12469 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12468 12469 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 12470 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12745 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13104 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13103 13104 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 13105 13158 . + . KQ414828.1 exonerate:protein2genome:local exon 13105 13158 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 11012 13158 395 + . alignment_id 2 ; Query AmOr86 ; Align 11012 239 153 ; Align 12470 290 276 ; Align 13105 382 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 382 Query range: 236 -> 399 Target range: 3558 -> 6471 237 : AlaSerLysCysTyrGluAlaLeuLysGluCysIleArgGlnHisGlnSerLeuIleGluPh : 257 :!!..!:!!||||||! !!!!|||.!.||||||!:!|||||||||:!!|||||||||!: SerAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTy 3559 : TCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATA : 3619 258 : eCysAspLysLeuGluHisValTyrThrLeuProIlePheGlyHisValValValPheSerL : 278 !|||:!!||||||:!!.!.|||!:! !:!! !:!:.!!!.!!!.|||:!!:!!||||||| rCysAsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerL 3620 : CTGTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTT : 3682 279 : euLeuMetCysPheAspThrTyrGluIlePheLeu >>>> Target Intron 1 >>>> : 290 |||||||||||.!!||| !||| :!: ! :!! 457 bp euLeuMetCysLeuAspGlyTyr---LeuValMet++ 3683 : TGTTAATGTGCCTCGATGGATAT---TTGGTGATGgt......................... : 3717 291 : AlaAsnValProValSerMetArgLeuIlePhePhePheHisMetValGlySerPheIle : 309 ! !:!!..!|||:!!! !..!||||||! !|||!!.||||||:!:..!|||!!!.!. ! ++GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCys 3718 : agGAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGC : 4229 310 : HisIleIlePhePheThrTyrIleCysGlyGlyLeuIleGluGluSerSerAsnIleGlyLe : 330 !!.:!::!:.!.|||||||||! !|||! ! !!||||||..!||||||! !|||:!:!.! GlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAs 4230 : CAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAA : 4292 331 : uAlaThrTyrSerGlyTrpTrpThrValLeuProMetAspGluAlaGlyArgMetLeuArgG : 351 !|||! !|||..! !!! !|||! ! !||||||||||||..!:!!|||||||||||||||: nAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgL 4293 : TGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAA : 4355 352 : luAspValLysValMetIleMetLysSerMetArgProCysHisLeuSerAlaGlyGlyPhe : 371 !!|||:!!! ! !!:!:||| !:!|||! !|||||| !|||!!!||| !!|||||| ysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhe 4356 : AAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTC : 4415 372 : PheProValSerLeuGluThrSerThrAla >>>> Target Intron 2 >>>> Leu : 382 |||||||||||||||||||||! !|||:!! 1970 bp :!! PheProValSerLeuGluThrTyrThrSer++ ++Val 4416 : TTCCCTGTGTCACTGGAAACGTACACTTCGgt.........................agGTT : 6418 383 : MetSerSerThrLeuSerTyrPheThrLeuMetArgGluSerSerLysAsp : 399 !!:|||!!!.!!:!!|||||||||||||||:!:|||:!! !!! !:!!||| IleSerThrAlaValSerTyrPheThrLeuLeuArgGlnArgIleGluAsp 6419 : ATAAGTACAGCAGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAGGAC : 6471 vulgar: AmOr86 236 399 . KQ414828.1 3558 6471 + 382 M 49 147 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 3559 6471 382 + . gene_id 3 ; sequence AmOr86 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 3559 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3559 3714 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6471 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6471 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 3559 6471 382 + . alignment_id 3 ; Query AmOr86 ; Align 3559 237 147 ; Align 3706 287 9 ; Align 4172 290 276 ; Align 6418 382 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 334 Query range: 35 -> 223 Target range: 21801 -> 22842 36 : ArgIleAlaMetAlaTyrThrPheValIleGlnValTyrGlyLeuTyrLeuAsnIleGly : 55 |||! !..!:!: |||......:::|||||| ! !|||:!! !! !! ! ArgLysCysLeuIleTyrValIleIleIleGln***ThrPheAlaTyrValLeuLysGlu 21802 : AGAAAATGTTTgatatatgtaataataatacaataaactTTTGCATATGTTCTTAAAGAG : 21859 56 : AspIleTyrHisSerTrpAspAspLeuSerHisCysIlePheLeuThrCysAsnThrLeu : 75 .!.||| ... ...... !|||!!:!:!:!!.!!||||||!:!||| GlnIleIleArgIleIleLeuPhePheGlnValCysMetTyrMetAlaCysAsnSerLeu 21860 : CAAATTATAcgtataattttgttttttcaggTTTGCATGTACATGGCATGCAACAGTTTA : 21919 76 : CysIleValLeuThrMetPheLysPheSerIleLeuPheIleArgArgThrGluPheLys : 95 ..!:!:|||||| !!!:.!!|||.!!! !:!!|||.!!:!!|||!:!! !:!!||| AlaLeuValLeuAspIleIleLysIlePheValLeuLeuValArgLysLysLysPheLeu 21920 : GCCCTGGTTTTGGATATAATCAAGATTTTCGTCCTACTCGTACGGAAGAAAAAGTTTCTC : 21979 96 : AsnLeuIleLeuPheAlaArgLysAsnPheTrpHisLeuAspTyrAspArgHisGluThr : 115 ..!|||||| !!:! !!:!||||||||||||||||||:!!||||||!:! !!|||!.! GlyLeuIleGluTyrMetGlnLysAsnPheTrpHisLeuAsnTyrAspGlnAspGluAsn 21980 : GGTCTGATTGAGTACATGCAGAAGAATTTTTGGCATTTGAACTACGACCAGGACGAGAAT : 22039 116 : IleLeuPheThrLysCysArgLysPheCysThrLeuTrpThrLeuThrValPheSerPhe : 135 !:!!.!!.!! ! ...!:!::! |||! !! !!::..!! !..! !!! ! !! ! SerIleIleAlaHisAlaLysArgThrCysIleTyrPheValCysValPheSerPheCys 22040 : TCTATTATCGCACACGCGAAACGAACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGT : 22099 136 : ThrGlnAlaSerLeuThrPheTyrIleIleThrProIleCys{A} >>>> Target I : 150 :!!|||:!!!!!:!! !! !|||||||||! !|||.!! {:} 170 SerGlnSerThrValPheSerTyrIleIleArgProPheVal{S}++ 22100 : TCTCAATCTACAGTTTTTTCCTATATAATAAGGCCATTTGTA{T}gt............. : 22147 151 : ntron 1 >>>> {la}AsnIleGlyLysAsnLysSerGluArgIleLeuProPheLys : 164 bp {!!}|||:!!|||||||||:!!|||!!:||| !! ! !!:! ! ++{er}AsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAsp 22148 : ............ag{ca}AATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGAT : 22356 165 : MetTrpValAspPheProLeuSerGluThrProTyrTyrGluIleMetPheValIleGln : 184 ||||||:!!|||.!.|||||||||! !|||||||||||||||||| ::!:!!|||||| MetTrpLeuAspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGln 22357 : ATGTGGCTCGATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAG : 22416 185 : >>>> Target Intron 2 >>>> LeuLeuThrValGlnGlnIleGlyIleAlaT : 195 307 bp !|||:!!||| ! |||:!!.!! ..!| ++ ++AlaLeuSerValTyrGlnValSerAlaCysT 22417 : gt.........................agGCTTTATCTGTGTACCAAGTTAGCGCGTGTT : 22756 196 : yrThrCysAsnAspAsnPheLeuCysValLeuAsnMetHisValValCysGlnPheArgI : 215 || !||| ||| ...... :::||| :!:||||||!.! !!|||||||||| yrLeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgI 22757 : ACCTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTA : 22816 216 : leLeuGlnHisArgLeuThrLysLeu : 223 ||||||||:!!|||:!!.!!!!.:!! leLeuGlnTyrArgIleAlaAsnVal 22817 : TACTACAATACAGAATTGCCAATGTG : 22842 vulgar: AmOr86 35 223 . KQ414828.1 21801 22842 + 334 M 114 342 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 34 102 5 0 2 I 0 303 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21802 22842 334 + . gene_id 4 ; sequence AmOr86 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 21802 22144 . + . KQ414828.1 exonerate:protein2genome:local exon 21802 22144 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22145 22146 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22145 22314 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22313 22314 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 22315 22418 . + . KQ414828.1 exonerate:protein2genome:local exon 22315 22418 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22419 22420 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22419 22725 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 22842 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 22842 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21802 22842 334 + . alignment_id 4 ; Query AmOr86 ; Align 21802 36 342 ; Align 22317 151 102 ; Align 22726 185 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 253 Query range: 147 -> 235 Target range: 17818 -> 18192 148 : IleCysAlaAsnIleGlyLysAsnLysSerGluArgIleLeuProPheLysMetTrpVal : 167 |||! ||||||||||||||||||:::|||||||||||||||||||||!!.||||||||| IleLeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpVal 17819 : ATTTTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTC : 17876 168 : AspPheProLeuSerGluThrProTyrTyrGluIleMetPheValIleGln >>>> Ta : 185 :!!!!.||||||||| !|||||||||||||||||| ||| :::||| AsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln++ 17877 : AACTTGCCATTATCAATGACGCCATATTACgaaataactttttcattaCAGgt....... : 17932 186 : rget Intron 1 >>>> LeuLeuThrValGlnGlnIleGlyIleAlaTyrThrCysA : 198 110 bp ::!|||:!!:!! ! !!.||||||:!:::!||| !||| ++ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysP 17933 : ..................aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgct : 18079 199 : snAspAsnPheLeuCysValLeuAsnMetHisValValCysGlnPheArgIleLeuGlnH : 218 |||||||||||||||::!:!!|||:!!|||!.!!.! !|||||||||:!!||||||: heAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnT 18080 : tcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAAT : 18139 219 : isArgLeuThrLysLeuTrpSerIleIleAspGluArgAlaAspLysPheAsn : 235 !!|||:!!.!!!!.:!! ..!:!!! |||:::... ::: ||| yrArgMetAlaAsnMetThrAspLeuLysAspLysGluArgLysGluArgAsn 18140 : ACCGAATGGCGAATATGACCGATTTAAAGGacaaagagaggaaagagagaaat : 18192 vulgar: AmOr86 147 235 . KQ414828.1 17818 18192 + 253 M 37 111 5 0 2 I 0 106 3 0 2 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17819 18192 253 + . gene_id 5 ; sequence AmOr86 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17819 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17819 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18192 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18192 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17819 18192 253 + . alignment_id 5 ; Query AmOr86 ; Align 17819 148 111 ; Align 18040 185 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 230 Query range: 149 -> 235 Target range: 2879 -> 3540 150 : AlaAsnIleGlyLysAsnLysSerGluArgIleLeuProPheLysMetTrpValAspPhePr : 170 |||!::||||||||||||:::|||!!:|||:!!||| ! !!!!..!.|||:!!|||.!.|| AlaSerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuPr 2880 : GCAAgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCC : 2940 171 : oLeuSerGluThrProTyrTyrGluIleMetPheValIleGln >>>> Target Intro : 185 |:!!!!! ||||||||||||||||||:::|||...|||||| 406 bp oIleThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2941 : GATAACCATCACACCATactatgaaatattatttacgaTACAGgt................. : 2987 186 : n 1 >>>> LeuLeuThrValGlnGlnIleGlyIleAlaTyrThrCysAsnAspAsnPheL : 202 :!!!!!! !:!!..! ! :!! !!|||::!||| !|||! !|||||||||| ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheL 2988 : ........agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTC : 3442 203 : euCysValLeuAsnMetHisValValCysGlnPheArgIleLeuGlnHisArgLeuThrLys : 222 |||||:!!:!!|||:!:|||..!!.! !||||||||||||||||||:!!||||||:!!!!. euCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsn 3443 : TGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAAT : 3502 223 : LeuTrpSerIleIleAspGluArgAlaAspLysPheAsn : 235 :!!!! .!! !:!!||||||:::||||||...::: ValCysGly---AlaAsnGluArgSerAspLysIleSer 3503 : GTGTGCGGT---GCAAACGAACGTAgcgataaaatttcg : 3540 vulgar: AmOr86 149 235 . KQ414828.1 2879 3540 + 230 M 35 105 5 0 2 I 0 402 3 0 2 M 41 123 G 1 0 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2880 3540 230 + . gene_id 6 ; sequence AmOr86 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2880 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2880 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3540 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3540 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 2880 3540 230 + . alignment_id 6 ; Query AmOr86 ; Align 2880 150 105 ; Align 3391 185 123 ; Align 3514 227 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 193 Query range: 147 -> 223 Target range: 37450 -> 37985 148 : IleCysAlaAsnIleGlyLysAsnLysSerGluArgIleLeuProPheLysMetTrpVal : 167 ||| ||||||:!!|||||||||:!!|||!!:||| !! ! !!:! ! ||||||:!! IleSerAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 37451 : atttcagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 37508 168 : AspPheProLeuSerGluThrProTyrTyrGluIleMetPheValIleGln >>>> Ta : 185 |||.!.||||||||| !|||||||||||||||||| ::!:!!|||||| AspLeuProLeuSerIleThrProTyrTyrGluIleThrTyrIleIleGln++ 37509 : GATCTACCATTATCCATAACAccatattatgaaattacttACATAATACAGgt....... : 37564 186 : rget Intron 1 >>>> LeuLeuThrValGlnGlnIleGlyIleAlaTyrThrCysA : 198 307 bp !|||:!!||| ! |||:!!.!! ..!||| !||| ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysP 37565 : ..................agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCt : 37908 199 : snAspAsnPheLeuCysValLeuAsnMetHisValValCysGlnPheArgIleLeuGlnH : 218 ||| ...... :::||| :!:||||||!.! !!||||||||||||||||||: heAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnT 37909 : ttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAAT : 37968 219 : isArgLeuThrLysLeu : 223 !!|||:!!.!!!!.:!! yrArgIleAlaAsnVal 37969 : ACAGAATTGCCAATGTG : 37985 vulgar: AmOr86 147 223 . KQ414828.1 37450 37985 + 193 M 37 111 5 0 2 I 0 303 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37451 37985 193 + . gene_id 7 ; sequence AmOr86 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37451 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37451 37561 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 37985 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 37985 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37451 37985 193 + . alignment_id 7 ; Query AmOr86 ; Align 37451 148 111 ; Align 37869 185 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 173 Query range: 235 -> 292 Target range: 32975 -> 33146 236 : TyrAlaSerLysCysTyrGluAlaLeuLysGluCysIleArgGlnHisGlnSerLeuIle : 255 |||:!!..!||||||||| !!!!|||.!.||||||!:!|||||||||:!!|||||| TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 32976 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTaatt : 33033 256 : GluPheCysAspLysLeuGluHisValTyrThrLeuProIlePheGlyHisValValVal : 275 |||||||||::: ||||||.!.|||!:!|||:!! !:!!.!!|||!!.|||:!!:!! GluPheCysGluIleLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMet 33034 : gaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTAATG : 33093 276 : PheSerLeuLeuMetCysPheAspThrTyrGluIlePheLeuAlaAsnVal : 292 ||||||:!!:!!!!:||||||! ! !||||||:!!.!!|||!.!!:!:!! PheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeuValSerIle 33094 : TTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGGTGAGTATC : 33146 vulgar: AmOr86 235 292 . KQ414828.1 32975 33146 + 173 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32976 33146 173 + . gene_id 8 ; sequence AmOr86 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 32976 33146 . + . KQ414828.1 exonerate:protein2genome:local exon 32976 33146 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32976 33146 173 + . alignment_id 8 ; Query AmOr86 ; Align 32976 236 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 163 Query range: 235 -> 292 Target range: 38039 -> 38210 236 : TyrAlaSerLysCysTyrGluAlaLeuLysGluCysIleArgGlnHisGlnSerLeuIle : 255 |||:!!..!||||||||| !!!!|||.!.||||||!:!|||||||||:!!|||||| TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 38040 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATT : 38097 256 : GluPheCysAspLysLeuGluHisValTyrThrLeuProIlePheGlyHisValValVal : 275 |||||||||! ! !||||||.!.|||!:!|||:!! ! !.!!|||!!.|||:!!:!! GluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnValLeuMet 38098 : GAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCTAATG : 38157 276 : PheSerLeuLeuMetCysPheAspThrTyrGluIlePheLeuAlaAsnVal : 292 ||||||:!!|||!!:||||||! !..!|||:!! !.!!|||!.!!:!:!! PheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeuValSerIle 38158 : TTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGGTGAGTATC : 38210 vulgar: AmOr86 235 292 . KQ414828.1 38039 38210 + 163 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38040 38210 163 + . gene_id 9 ; sequence AmOr86 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38040 38210 . + . KQ414828.1 exonerate:protein2genome:local exon 38040 38210 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38040 38210 163 + . alignment_id 9 ; Query AmOr86 ; Align 38040 236 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 235 -> 292 Target range: 22896 -> 23067 236 : TyrAlaSerLysCysTyrGluAlaLeuLysGluCysIleArgGlnHisGlnSerLeuIle : 255 |||:!!..!||||||||| !!!!|||.!.||||||!:!|||||||||:!!|||||| TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 22897 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATT : 22954 256 : GluPheCysAspLysLeuGluHisValTyrThrLeuProIlePheGlyHisValValVal : 275 |||||||||! ! !||||||.!.|||!:!|||:!! !:!!.!!|||!!.|||:!!:!! GluPheCysAlaThrLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMet 22955 : GAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCTAATG : 23014 276 : PheSerLeuLeuMetCysPheAspThrTyrGluIlePheLeuAlaAsnVal : 292 ! !|||:!!|||!!:|||||| ! !|||:!!:!!.!!|||!.!!:!:!! SerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeuValSerIle 23015 : TCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGGTGAGTATC : 23067 vulgar: AmOr86 235 292 . KQ414828.1 22896 23067 + 161 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22897 23067 161 + . gene_id 10 ; sequence AmOr86 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 22897 23067 . + . KQ414828.1 exonerate:protein2genome:local exon 22897 23067 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22897 23067 161 + . alignment_id 10 ; Query AmOr86 ; Align 22897 236 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 63 -> 148 Target range: 26918 -> 27173 64 : LeuSerHisCysIlePheLeuThrCysAsnThrLeuCysIleValLeuThrMetPheLys : 83 |||..! !|||!!:!:!:!!.!! !!||| !|||..!!!:|||||| !!!:.!!||| LeuGlnValCysMetTyrMetAlaGlyAsnGlyLeuAlaMetValLeuAspIleIleLys 26919 : ctacaGGTTTGCATGTACATGGCTGGCAACGGTTTAGCCATGGTTTTGGATATAATCAAG : 26976 84 : PheSerIleLeuPheIleArgArgThrGluPheLysAsnLeuIleLeuPheAlaArgLys : 103 .!!! !! !||| !!:!!!.!!:!! !:!!||| ..!|||||| !!:! !!:!||| IlePheThrLeuValValHisLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLys 26977 : ATTTTCACCCTAGTCGTACACAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAG : 27036 104 : AsnPheTrpHisLeuAspTyrAspArgHisGluThrIleLeuPheThrLysCysArgLys : 123 |||||||||||||||:!!||||||!:!:!!|||!.! !:!!!!..!!:!!...!:!::! AsnPheTrpHisLeuAsnTyrAspGlnTyrGluAsnSerValLeuAlaGlnAlaLysArg 27037 : AATTTTTGGCATTTGAACTACGATCAGTACGAGAATTCTGTTTTGGCACAGGCGAAACGA : 27096 124 : PheCysThrLeuTrpThrLeuThrValPheSerPheThrGlnAlaSerLeuThrPheTyr : 143 .!.|||! !! !!::..!! ...::: |||:::|||:::|||:!! !! !||| MetCysIleTyrPheValCysValLeuSerPhePheSerGlnSerSerValLeuSerTyr 27097 : ATGTGCATTTACTTCGTGTGcgttttgtcatttttttctcaatctTCAGTTCTTTCCTAT : 27156 144 : IleIleThrProIle : 148 ||||||! !|||:!! IleIleArgProLeu 27157 : ATCATAAGGCCACTT : 27173 vulgar: AmOr86 63 148 . KQ414828.1 26918 27173 + 160 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26919 27173 160 + . gene_id 11 ; sequence AmOr86 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 26919 27173 . + . KQ414828.1 exonerate:protein2genome:local exon 26919 27173 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 26919 27173 160 + . alignment_id 11 ; Query AmOr86 ; Align 26919 64 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 147 -> 188 Target range: 27339 -> 27462 148 : IleCysAlaAsnIleGlyLysAsnLysSerGluArgIleLeuProPheLysMetTrpVal : 167 ||| ||||||:!!|||||||||:!!|||!!:||| !! ! !||| ! |||||| !! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPhe 27340 : attttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTC : 27397 168 : AspPheProLeuSerGluThrProTyrTyrGluIleMetPheValIleGlnLeuLeuThr : 187 |||.!.|||||||||! !|||||||||||||||||| ::!:!!||||||:!!||| !! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 27398 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 27457 188 : Val : 188 :!! Ile 27458 : ATT : 27462 vulgar: AmOr86 147 188 . KQ414828.1 27339 27462 + 130 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27340 27462 130 + . gene_id 12 ; sequence AmOr86 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27340 27462 . + . KQ414828.1 exonerate:protein2genome:local exon 27340 27462 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27340 27462 130 + . alignment_id 12 ; Query AmOr86 ; Align 27340 148 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 147 -> 188 Target range: 32386 -> 32509 148 : IleCysAlaAsnIleGlyLysAsnLysSerGluArgIleLeuProPheLysMetTrpVal : 167 ||| ||||||:!!|||||||||:!!|||!!:||| !! ! !!:! ! ||||||:!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 32387 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 32444 168 : AspPheProLeuSerGluThrProTyrTyrGluIleMetPheValIleGlnLeuLeuThr : 187 |||.!.|||||||||! !|||||||||||||||||| ::!:!!||||||:!!||| !! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 32445 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 32504 188 : Val : 188 :!! Ile 32505 : ATT : 32509 vulgar: AmOr86 147 188 . KQ414828.1 32386 32509 + 129 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32387 32509 129 + . gene_id 13 ; sequence AmOr86 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 32387 32509 . + . KQ414828.1 exonerate:protein2genome:local exon 32387 32509 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32387 32509 129 + . alignment_id 13 ; Query AmOr86 ; Align 32387 148 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 7 -> 65 Target range: 727 -> 901 8 : AspValSerIleValValSerGlnPheLeuLeuLysLeuThrGlyValTrpMetThrValAsnA : 29 |||:!!:!!:!:..!|||!!! |||! !||||||:!!! !||| !!|||:!:.!!! !!.! AspIleAlaValThrValThrAlaPheTyrLeuLysIleIleGlyPheTrpLeuAlaAspThrT 728 : GACATAGCGGTGACCGTTACGGCTTTCTACTTGAAAATTATCGGCTTCTGGTTAGCTGACACTT : 791 30 : spGlyGluLysArgArgArgArgIleAlaMetAlaTyrThrPheValIleGlnValTyrGlyLe : 50 !!! !|||||||||||||||:::...|||..! !!:!|||.!. !!!!:! !|||! !!.!:! yrGluGluLysArgArgArgLysPheAlaGlnAsnPheThrIlePheMetLeuValCysAlaVa 792 : ACGAGGAGAAacgtcgaagaaaattcgcgcAGAATTTCACGATATTTATGCTGGTGTGCGCTGT : 854 51 : uTyrLeuAsnIleGlyAspIleTyrHisSerTrpAspAspLeuSer : 65 ! :!!.!.! !!|||||||||:!!!!!|||! !|||!!!||| lValIleGluThrArgAspIleTyrTyrThrTrpGlyAspPheSer 855 : GGTAATTGAGACGAGGGATATCTATTACACCTGGGGTGATTTCAGC : 901 vulgar: AmOr86 7 65 . KQ414828.1 727 901 + 118 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 728 901 118 + . gene_id 14 ; sequence AmOr86 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 728 901 . + . KQ414828.1 exonerate:protein2genome:local exon 728 901 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 728 901 118 + . alignment_id 14 ; Query AmOr86 ; Align 728 8 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 191 -> 233 Target range: 10852 -> 10978 192 : GlyIleAlaTyrThrCysAsnAspAsnPheLeuCysValLeuAsnMetHisValValCys : 211 ||||||..!||| !||| !||||||.!!!!!|||:!!:!!!:!:!!|||:!! ! !! GlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerValHisLeuSerGly 10853 : GGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTGCATTTGAGTGGC : 10910 212 : GlnPheArgIleLeuGlnHisArgLeuThrLysLeuTrpSerIleIleAspGluArgAla : 231 ||||||||||||||||||:!!|||||||||||||||! ..!:!! ! !!:!!! !::: GlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGlnTyrGlnIleSer 10911 : CAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAATATCAGATAAgc : 10970 232 : AspLys : 233 :::||| GluLys 10971 : gagaaa : 10978 vulgar: AmOr86 191 233 . KQ414828.1 10852 10978 + 108 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10853 10978 108 + . gene_id 15 ; sequence AmOr86 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 10853 10978 . + . KQ414828.1 exonerate:protein2genome:local exon 10853 10978 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10853 10978 108 + . alignment_id 15 ; Query AmOr86 ; Align 10853 192 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 181 -> 223 Target range: 32795 -> 32921 182 : ValIleGlnLeuLeuThrValGlnGlnIleGlyIleAlaTyrThrCysAsnAspAsnPhe : 201 ::!! ||| !|||:!!||| ! |||:!!|||:!:..!||| !||| ||||||... LeuThrGlnAlaLeuSerValTyrGlnValGlyValCysTyrLeuCysPheAspAsnIle 32796 : ctCACGCAGGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCTttgataacatt : 32853 202 : LeuCysValLeuAsnMetHisValValCysGlnPheArgIleLeuGlnHisArgLeuThr : 221 ... :::::: !:!:||||||!.! !!||||||||||||||||||:!!|||:!!.!! PhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAla 32854 : tttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCC : 32913 222 : LysLeu : 223 !!.:!! AsnVal 32914 : AATGTG : 32921 vulgar: AmOr86 181 223 . KQ414828.1 32795 32921 + 103 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32796 32921 103 + . gene_id 16 ; sequence AmOr86 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 32796 32921 . + . KQ414828.1 exonerate:protein2genome:local exon 32796 32921 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32796 32921 103 + . alignment_id 16 ; Query AmOr86 ; Align 32796 182 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr92PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1300 Query range: 1 -> 403 Target range: 15106 -> 19909 2 : AsnPheLeuGluAsnAspValAlaValSerLeuThrSerIlePheMetLysPheValGly : 21 !:!||| ! :!!|||:!!:!!:!!||||||||||||:!!|||||||||.!!|||||| SerPheThrThrAspAspIleSerIleSerLeuThrSerValPheMetLysIleValGly 15107 : AGTTTCACCACCGATGACATATCAATCAGCCTGACGTCCGTTTTCATGAAGATCGTTGGA : 15164 22 : IleTrpMetUnk<-><->GlnTyrGlnGlnArgMetArgAsnIleMetValAlaTyrAsn : 39 :!:||||||... !::!:!:!!||||||:!:|||||||||! !:!!..!|||!.. LeuTrpMetAlaSerAsnArgPheGluGlnArgValArgAsnIleThrLeuCysTyrThr 15165 : CTGTGGATGGCGTCGAACCGTTTCGAGCAACGAGTACGAAATATCACGCTGTGTTACACG : 15224 40 : ValIleAlaIlePhePheAlaLeuTrpIleGlnThrMetAspMetTyrHisSerTrpGly : 59 :!!|||||||||.!!||||||||||||||||||! !! !|||:!!|||:!!||||||||| LeuIleAlaIleLeuPheAlaLeuTrpIleGlnMetThrAspLeuTyrTyrSerTrpGly 15225 : CTGATCGCGATTCTCTTCGCCCTGTGGATACAAATGACGGATTTGTATTACTCGTGGGGA : 15284 60 : AsnIleArg >>>> Target Intron 1 >>>> AlaCysLeuPheSerThrSerA : 70 :!!.!! !! 891 bp |||||||||!:!!!!.!!!!!| AspPheGly++ ++AlaCysLeuTyrThrAlaCysA 15285 : GATTTTGGTgt.........................agGCCTGTTTATATACTGCATGCA : 16208 71 : snThrLeuSerLeuIleLeuProLeuLeuLysIlePheIleLeuLeuCysHisLysGlnA : 90 ||! !|||||||||! !:!!|||!!!|||||||||.!!:!!||||||...||||||...| snIleLeuSerLeuThrIleProPheLeuLysIleLeuValLeuLeuAlaHisLysAsnA 16209 : ACATTTTATCGTTAACAATACCGTTTCTCAAGATACTCGTCTTGCTTGCAcacaaaaatg : 16268 91 : spPhePheArgLeuValLeuTyrMetLysArgAsnPheLeu<->UnkAsnTyrAspAspH : 109 ||||||||...|||:::|||:!!:!::!!|||.!.|||||| ...:!!|||||||||: spPhePheHisLeuIleLeuHisLeuGlnArgGluPheLeuHisAlaAspTyrAspAspT 16269 : atttttttcatttgattcTGCACCTACAACGAGAATTCTTGCATGCAGATTACGACGACT : 16328 110 : isGluArgLysIleValIleGlyCysAsnGlnLysCysThrPhePheIleCysPhePheT : 129 !!|||!:!||||||:!!:!!||||||.!.!:::!!||||||||||||:!!|||||||||| yrGluLysLysIleLeuLeuGlyCysGlnArgGlnCysThrPhePheValCysPhePheT 16329 : ACGAGAAAAAGATTTTGCTCGGTTGCCAACGTCAATGTACCTTCTTCGTTTGTTTCTTCA : 16388 130 : hrPheLeuThrIleAlaThrThrAlaSerTyrMetValIleProLeuIle{V} >>>> : 146 ||.!!!!!|||! !!.!|||..! !||||||!!:|||! !|||||||||{!} hrLeuPheThrLysGlyThrValIleSerTyrIleValAsnProLeuIle{A}++ 16389 : CACTTTTCACTAAAGGAACTGTTATCTCGTACATCGTTAATCCGCTTATT{G}gt..... : 16442 147 : Target Intron 2 >>>> {al}AsnIleGlyLysAsnGluSerAspArgValLeuP : 158 1386 bp {.!}|||||||||||||||||||||!!:|||:!!|||| ++{la}AsnIleGlyLysAsnGluSerGluArgIleLeuP 16443 : ....................ag{ca}aatattggaaaaaatgagTCAGAGAGGATACTTC : 17861 159 : roPheAsnMetTrpValAsnLeuProLeuSerMetThrProTyrPheGluIleSerPheV : 178 ||||||||||||||||||||||||||||||||||||||||||||!:!||||||:::||| roPheAsnMetTrpValAsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheS 17862 : CATTTAATATGTGGGTCAACTTGCCATTATCAATGACGCCATATTACgaaataacttttt : 17921 179 : alLeuZed >>>> Target Intron 3 >>>> ValLeuSerLeuTyrGlnIleAl : 188 |||::: 110 bp |||||||||||||||!!.|||!. erLeuGln++ ++ValLeuSerLeuTyrHisIleGl 17922 : cattaCAGgt.........................aggtTCTGTCTCTGTACCATATTGG : 18061 189 : aValSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnPheHisValAlaGlyGl : 208 !||||||||||||||||||||||||||||||||||||||||||!!.|||!.!||| !|| yValSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGl 18062 : CGTGAGTTATTTCTgcttcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCA : 18121 209 : nPheLysValLeuGlnHisArgIleSerThrIleAlaAspLeuThrIleLys<->ThrGl : 227 ||||::!|||||||||:!!|||!!::!!!.!!!:.!!||||||! ! ||| :: nPheArgValLeuGlnTyrArgMetAlaAsnMetThrAspLeuLysAspLysGluArgLy 18122 : GTTTCGAGTATTGCAATACCGAATGGCGAATATGACCGATTTAAAGGacaaagagaggaa : 18181 228 : uGluLysLysGluLysLeuIleIleAspSerLeuHisPheSerAsnLysCysTyrThrTh : 247 :|||:::... ||| !! !:!:..!||| ! !|||:!!!..:!!||||||!.!.. sGluArgAsnMetLysThrSerValSerSerAlaCysPheAlaThrGluCysTyrAsnVa 18182 : agagagaaatatgaAGACAAGTGTGAGTTCGGCGTGCTTTGCAACAGAATGTTACAACGT : 18241 248 : rPheLysLysTyrIleArgGlnHisGlnThrLeuIleAlaTyrCysArgLysIleGluVa : 267 !.!!||| ! ||||||||||||||||||!.!|||||||||||||||!.!|||:!!||| lLeuLysAspTyrIleArgGlnHisGlnAsnLeuIleAlaTyrCysAsnLysLeuGluLy 18242 : TCTCAAAGATTATATCAGACAGCATCAGAACCTGATTGCTTATTGCAACAAACTCGAGAA : 18301 268 : lValPheAsnTrpIleValLeuGluGlnValLeuMetPheSerLeuLeuIleCysLeuAs : 287 !||||||||| |||||||||! !|||:!!||||||||||||:!!|||||||||||||| sValPheAsnIleIleValLeuGlyGlnLeuLeuMetPheSerMetLeuIleCysLeuAs 18302 : AGTGTTCAATATCATTGTTCTGGGGCAATTGTTAATGTTCAGCATGTTGATCTGTCTCGA : 18361 288 : pGlyTyrGlnIleLeuMet >>>> Target Intron 4 >>>> AlaAspGluAsp : 297 ||||!:!|||||||||||| 975 bp |||:!! ! ! pGlyPheGlnIleLeuMet++ ++AlaAsnThrPro 18362 : TGGATTTCAGATACTTATGgt.........................agGCAAATACACCT : 19366 298 : IleLysThrArgSerIlePheSerPheHisIleLeuSerCysLeuCysGlnLeuLeuMet : 317 ! !!:!|||||| !||||||! !||||||||| !:!!|||:!!||||||||||||||| ThrArgThrArgLeuIlePheIlePheHisIleGlyAlaCysMetCysGlnLeuLeuMet 19367 : ACCAGAACCCGACTGATTTTCATCTTTCACATAGGAGCATGCATGTGTCAATTGCTGATG : 19426 318 : PheSerTyrSerCysAspCysIleLeuArgGluSerValSerValAlaThrAlaAlaTyr : 337 |||!!!||||||||||||||||||:!!|||||||||..!|||..!||| !|||!.!||| PheThrTyrSerCysAspCysIleIleArgGluSerThrSerThrAlaGluAlaValTyr 19427 : TTTACCTACAGCTGCGACTGCATCATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTAC : 19486 338 : GluGlyProTrpThrLeuProProMetThrIleSerGlyArgMetMetArgLysAspLeu : 357 ...||||||||||||||| !||||||!:! !..!|||!:!|||!!:|||||||||||| SerGlyProTrpThrLeuLeuProMetSerAlaAspGlyLysMetIleArgLysAspLeu 19487 : AGCGGTCCCTGGACACTTTTACCAATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTG : 19546 358 : IleValValIleMetArgAlaSerIleProCysCysLeuSerGlyLysGlyTyrPheIle : 377 !!::!!||||||||||||:!!|||:!!||||||||||||!!!!.!!:!|||!:!|||:!! MetLeuValIleMetArgSerSerValProCysCysLeuThrAlaArgGlyPhePheVal 19547 : ATGCTCGTTATCATGAGATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTC : 19606 378 : ValSerLeuGluThrTyrThrSer >>>> Target Intron 5 >>>> ValLeuS : 388 |||||||||||||||||||||.!! 223 bp ||||||| ValSerLeuGluThrTyrThrGly++ ++ValLeuS 19607 : GTGTCTTTAGAAACGTACACAGGGgt.........................agGTTTTAA : 19862 389 : erThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnIleGluSer : 403 |||||||||||||||||||||||||||||!:!.!.!.. !|||!:! erThrAlaAlaSerTyrPheThrLeuLeuLysGlnArgSerGluAsn 19863 : GCACCGCAGCCTCATACTTTACGTTGCTGAAGCAAAGATCAGAGAAT : 19909 vulgar: AmOr92PSE 1 403 . KQ414828.1 15106 19909 + 1300 M 24 72 G 0 6 M 37 111 5 0 2 I 0 887 3 0 2 M 41 123 G 0 3 M 42 126 S 0 1 5 0 2 I 0 1382 3 0 2 S 1 2 M 34 102 5 0 2 I 0 106 3 0 2 M 45 135 G 0 3 M 68 204 5 0 2 I 0 971 3 0 2 M 92 276 5 0 2 I 0 219 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15107 19909 1300 + . gene_id 1 ; sequence AmOr92PSE ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 15107 15295 . + . KQ414828.1 exonerate:protein2genome:local exon 15107 15295 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 15296 15297 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 15296 16186 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 16185 16186 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 16187 16439 . + . KQ414828.1 exonerate:protein2genome:local exon 16187 16439 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 16440 16441 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 16440 17825 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 17824 17825 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 17826 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17826 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 2 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18381 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19909 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19909 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15107 19909 1300 + . alignment_id 1 ; Query AmOr92PSE ; Align 15107 2 72 ; Align 15185 26 111 ; Align 16187 63 123 ; Align 16313 104 126 ; Align 17828 147 102 ; Align 18040 181 135 ; Align 18178 226 204 ; Align 19357 294 276 ; Align 19856 386 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr92PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 741 Query range: 60 -> 405 Target range: 31964 -> 34319 61 : IleArgAlaCysLeuPheSerThrSerAsnThrLeuSerLeuIleLeuProLeuLeuLys : 80 ::::::!.!|||:!!!:!! !.!!!!!|||!:!:!!:!!|||:!!||| !:!!:!!||| LeuGlnValCysMetTyrMetAlaCysAsnSerIleAlaLeuValLeuAspIleIleLys 31965 : cttcagGTTTGCATGTACATGGCATGCAACAGTATAGCCCTGGTTTTGGATATAATCAAG : 32022 81 : IlePheIleLeuLeuCysHisLysGlnAspPhePheArgLeuValLeuTyrMetLysArg : 100 ||||||:!!|||:!! !..|||:!! ! |||.!! !!|||:!! !||||||:::::: IlePheValLeuValValArgLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLys 32023 : ATTTTCGTCCTAGTCGTACGGAAGAAAAAGTTTCTCGGTCTGATTGAGTACATgcagaag : 32082 101 : AsnPheLeu<->UnkAsnTyrAspAspHisGluArgLysIleValIleGlyCysAsnGln : 119 ||||||... |||||||||.!. !!|||!.!...|||:!! ! !...!!.!:! AsnPhePheHisLeuAsnTyrAspGlnAspGluAsnSerIleIleAlaHisAlaLysArg 32083 : aatttctttcatttgaaCTACGATCAGGACGAGAATTCTATTATCGCACACGCGAAACGA : 32142 120 : LysCysThrPhePheIleCysPhePheThrPheLeuThrIleAlaThrThrAlaSerTyr : 139 ! !|||! !!:!|||:!!||| !!|||:!!|||! !:!! !:!!|||..! !|||||| ThrCysIleTyrPheValCysValPheSerPheCysSerGlnSerThrValPheSerTyr 32143 : ACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTAT : 32202 140 : MetValIleProLeuIle{V} >>>> Target Intron 1 >>>> {al}AsnIle : 148 !!::!!! |||!!!:!!{ } 170 bp { !}|||:!! IleIleArgProPheVal{S}++ ++{er}AsnLeu 32203 : ATAATAAGGCCATTTGTA{T}gt.........................ag{ca}AATCTT : 32399 149 : GlyLysAsnGluSerAspArgValLeuProPheAsnMetTrpValAsnLeuProLeuSer : 168 |||||||||||||||||||||! !! ! !!:!:!!||||||:!!:!!|||||||||||| GlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuProLeuSer 32400 : GGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCATTATCC : 32459 169 : MetThrProTyrPheGluIleSerPheValLeuZed >>>> Target Intron 2 > : 181 :!:|||||||||:::||||||:::::!:!!:!!::: 307 bp ValThrProTyrTyrGluIleThrTyrIleIleGln++ 32460 : GTAACAccatattatgaaattacttACATAATACAGgt...................... : 32500 182 : >>> ValLeuSerLeuTyrGlnIleAlaValSerTyrPheCysPheAspAsnPheLeuC : 199 !.!||||||:!!||||||:!!!.!|||!!!|||.!!||||||||||||...... ++AlaLeuSerValTyrGlnValGlyValCysTyrLeuCysPheAspAsnIlePheP 32501 : ...agGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCTttgataacatttttt : 32859 200 : ysIleMetAsnPheHisValAlaGlyGlnPheLysValLeuGlnHisArgIleSerThrI : 219 |||||| !.!.||||||||||||||||||::::!!||||||:!!||||||:!!!.!: heIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnV 32860 : tcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATG : 32919 220 : leAlaAspLeuThrIleLysThrGluGluLysLysGluLysLeuIleIleAspSerLeuH : 239 !::!!! !|||!:! :!!! !! !:!!!..!!.!!:!!. !! !! ! !..!||| alSerGlyLeuSer---GluIleValLysSerAsnAspAsnThrSerThrAlaGluLeu- 32920 : TGTCAGGTCTAAGC---GAGATAGTGAAGAGCAATGATAATACAAGCACGGCTGAATTA- : 32976 240 : isPheSerAsnLysCysTyrThrThrPheLysLysTyrIleArgGlnHisGlnThrLeuI : 259 !:!|||.!.|||||||||! !! !||||||!!.! !|||!:!|||||||||.!!|||| --TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuI 32977 : --TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTaa : 33033 260 : leAlaTyrCysArgLysIleGluValValPheAsnTrpIleValLeuGluGlnValLeuM : 279 || :::|||... ::!|||! !||||||!.. |||||||||! !|||||||||| leGluPheCysGluIleLeuGluGluValPheThrValIleValLeuGlyGlnValLeuM 33034 : ttgaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTAA : 33093 280 : etPheSerLeuLeuIleCysLeuAspGlyTyrGlnIleLeuMet >>>> Target In : 294 ||||||||:!!:!!||||||!!!! !||||||:!!:!!|||:!! 406 etPheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeu++ 33094 : TGTTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGgt.............. : 33140 295 : tron 3 >>>> AlaAspGluAspIleLysThrArgSerIlePheSerPheHisIleLe : 309 bp ! ! .!!:!!:!!||| ! !|||!!!! ! !:!::! ++IleThrLeuProPheGluSerArgValAlaPheThrCysPheLeuIl 33141 : ...........agATAACGTTACCATTTGAATCGCGCGTTGCTTTCACGTGCTTCTTGAT : 33589 310 : uSerCysLeuCysGlnLeuLeuMetPheSerTyrSerCysAspCysIleLeuArgGluSe : 329 !!!! !!:!! !!||||||! !||||||!!!|||||||||:!!|||||| !! !||||| eThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAsnCysIleThrThrGluSe 33590 : TACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCAATTGCATAACAACAGAAAG : 33649 330 : rValSerValAlaThrAlaAlaTyrGluGlyProTrpThrLeuProProMetThrIleSe : 349 |:!!!:!:!!||| !:!!!.!|||! |||||||||! ! ! !|||||| rLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPh 33650 : CCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATggataaatt : 33709 350 : rGlyArgMetMetArgLysAspLeuIleValValIleMetArgAlaSerIleProCysCy : 369 |||:::::::!:|||||||||||| !|||:!!|||:!!||||||!!! !|||! !.. eGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerAl 33710 : tggaaaactgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCGC : 33769 370 : sLeuSerGlyLysGlyTyrPheIleValSerLeuGluThrTyrThrSer >>>> Targ : 386 !|||!!!!.! |||!:!||| !:!!!!!|||||||||!:!|||!.! aLeuThrAlaCysGlyPhePheSerIleThrLeuGluThrPheThrLys++ 33770 : TTTGACTGCCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTACTAAGgt......... : 33822 387 : et Intron 4 >>>> ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsn : 399 440 bp :!!:!!||||||:!! !||||||||||||||||||!:!.!. ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGln 33823 : ................agATCATGAGTACATCAATGTCGTATTTCACCCTACTAAAACAA : 34299 400 : AsnIleGluSerGluIle : 405 !:! !|||..! !:!! SerAlaGluAspThrVal 34300 : AGTGCCGAGGACACAGTA : 34319 vulgar: AmOr92PSE 60 405 . KQ414828.1 31964 34319 + 741 M 43 129 G 0 3 M 42 126 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 34 102 5 0 2 I 0 303 3 0 2 M 43 129 G 1 0 M 14 42 G 1 0 M 54 162 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31965 34319 741 + . gene_id 2 ; sequence AmOr92PSE ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 31965 32223 . + . KQ414828.1 exonerate:protein2genome:local exon 31965 32223 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32224 32225 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32224 32393 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32392 32393 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 32394 32497 . + . KQ414828.1 exonerate:protein2genome:local exon 32394 32497 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32498 32499 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32498 32804 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 32803 32804 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32805 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32805 33137 . + . insertions 0 ; deletions 2 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 4 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34319 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34319 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31965 34319 741 + . alignment_id 2 ; Query AmOr92PSE ; Align 31965 61 129 ; Align 32097 104 126 ; Align 32396 147 102 ; Align 32805 181 129 ; Align 32934 225 42 ; Align 32976 240 162 ; Align 33544 294 276 ; Align 34260 386 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr92PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 672 Query range: 145 -> 402 Target range: 2879 -> 6468 146 : ValAsnIleGlyLysAsnGluSerAspArgValLeuProPheAsnMetTrpValAsnLeuPr : 166 !.!!::||||||||||||||||||||||||:!!||| ! !!|||.!.|||:!!:!!||||| AlaSerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuPr 2880 : GCAAgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCC : 2940 167 : oLeuSerMetThrProTyrPheGluIleSerPheValLeuZed >>>> Target Intro : 181 |:!!!!!!!:|||||||||:::|||||| |||...:!!::: 406 bp oIleThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2941 : GATAACCATCACACCATactatgaaatattatttacgaTACAGgt................. : 2987 182 : n 1 >>>> ValLeuSerLeuTyrGlnIleAlaValSerTyrPheCysPheAspAsnPheL : 198 :!!!!!! !:!! ! :!!..!:!!||||||.!!|||.!!|||||||||| ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheL 2988 : ........agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTC : 3442 199 : euCysIleMetAsnPheHisValAlaGlyGlnPheLysValLeuGlnHisArgIleSerThr : 218 |||||!!:!!:|||.!.|||..!||| !||||||::!:!!||||||:!!|||:!:|||!.! euCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsn 3443 : TGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAAT : 3502 219 : IleAlaAspLeuThrIleLysThrGluGluLysLysGluLysLeuIleIleAspSerLeuHi : 239 :!:..!! ! .!!.!.|||:::!..:::|||::: :::! ! ValCysGly------------AlaAsnGluArgSerAspLysIleSerLysLysThrProSe 3503 : GTGTGCGGT------------GCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTC : 3553 240 : sPheSerAsnLysCysTyrThrThrPheLysLysTyrIleArgGlnHisGlnThrLeuIleA : 260 ! !|||:!!:!!||||||.!!! !||||||!!.! !|||!:!|||||||||.!!||||||! rAsnSerAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleG 3554 : CAATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAG : 3616 261 : laTyrCysArgLysIleGluValValPheAsnTrpIleValLeuGluGlnValLeuMetPhe : 280 !||||||!.!|||:!!:!!! !||||||..! .!!||||||! !|||||||||:!:||| luTyrCysAsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPhe 3617 : AATACTGTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTC : 3676 281 : SerLeuLeuIleCysLeuAspGlyTyrGlnIleLeuMet >>>> Target Intron 2 : 294 |||||||||!!:||||||||||||||| :!::!!||| 457 bp SerLeuLeuMetCysLeuAspGlyTyr---LeuValMet++ 3677 : AGTTTGTTAATGTGCCTCGATGGATAT---TTGGTGATGgt..................... : 3717 295 : >>>> AlaAspGluAspIleLysThrArgSerIlePheSerPheHisIleLeuSerCysLe : 312 ! !||| !|||! ! !||| !! !|||! !||||||:!! !.!!||||| ++GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLe 3718 : ....agGAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCT : 4226 313 : uCysGlnLeuLeuMetPheSerTyrSerCysAspCysIleLeuArgGluSerValSerValA : 333 |||||||||||||||||||!!!|||||||||||||||:!::!!|||||||||:!!!:!|||| uCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValA 4227 : GTGCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGG : 4289 334 : laThrAlaAlaTyrGluGlyProTrpThrLeuProProMetThrIleSerGlyArgMetMet : 353 ||!.!||| !|||!!: !! !!|||! !! ! !|||||| !! !||||||||||||:!! laAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeu 4290 : CCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTG : 4349 354 : ArgLysAspLeuIleValValIleMetArgAlaSerIleProCysCysLeuSerGlyLysGl : 374 ||||||||||||! ! !!|||||| |||:!!!!!:!!||||||||||||!!!!.! || ArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGl 4350 : CGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGG : 4412 375 : yTyrPheIleValSerLeuGluThrTyrThrSer >>>> Target Intron 3 >>>> : 386 |!:!||| !|||||||||||||||||||||||| 1970 bp yPhePheProValSerLeuGluThrTyrThrSer++ + 4413 : ATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt.........................a : 6416 387 : ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnIleGlu : 402 |||:!!|||||||||!.!|||||||||||||||||||||.!...!|||||| +ValIleSerThrAlaValSerTyrPheThrLeuLeuArgGlnArgIleGlu 6417 : gGTTATAAGTACAGCAGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAG : 6468 vulgar: AmOr92PSE 145 402 . KQ414828.1 2879 6468 + 672 M 35 105 5 0 2 I 0 402 3 0 2 M 41 123 G 4 0 M 64 192 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2880 6468 672 + . gene_id 3 ; sequence AmOr92PSE ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2880 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2880 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 0 ; deletions 5 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6468 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6468 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2880 6468 672 + . alignment_id 3 ; Query AmOr92PSE ; Align 2880 146 105 ; Align 3391 181 123 ; Align 3514 226 192 ; Align 3706 291 9 ; Align 4172 294 276 ; Align 6418 386 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr92PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 470 Query range: 143 -> 386 Target range: 22307 -> 23829 144 : LeuIleValAsnIleGlyLysAsnGluSerAspArgValLeuProPheAsnMetTrpVal : 163 ::::::...|||:!!|||||||||||||||||||||! !! ! !!:!:!!||||||:!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 22308 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 22365 164 : AsnLeuProLeuSerMetThrProTyrPheGluIleSerPhe >>>> Target Intr : 178 :!!||||||||||||:!:|||||||||:::||||||:::::! 316 bp AspLeuProLeuSerValThrProTyrTyrGluIleThrTyr-+ 22366 : GATCTACCATTATCCGTAACAccatattatgaaattacttACat................ : 22412 179 : on 1 >>>> ValLeuZedValLeuSerLeuTyrGlnIleAlaValSerTyrPheCysP : 194 !.!|||...||| ||||||:!!::!!.!!!!|||.!!|||| ++AlaLeuSerVal---------TyrGlnValSerAlaCysTyrLeuCysP 22413 : .........agGCTTTATCTGTG---------TACCAAGTTAGCGCGTGTTACCTTTGCt : 22765 195 : heAspAsnPheLeuCysIleMetAsnPheHisValAlaGlyGlnPheLysValLeuGlnH : 214 ||||| ...... |||::: .!.||||||||||||||||||::::!!||||||: heAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnT 22766 : ttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAAT : 22825 215 : isArgIleSerThrIleAlaAspLeuThrIleLysThrGluGluLysLysGluLysLeuI : 234 !!||||||:!!!.!:!::!!! !|||!:! :!!! !! !:!!!..!..|||!!.! !! yrArgIleAlaAsnValSerGlyLeuSer---GluIleValLysSerSerGluAsnProS 22826 : ACAGAATTGCCAATGTGTCAGGTCTAAGC---GAGATAGTGAAAAGCAGTGAAAATCCAA : 22882 235 : leIleAspSerLeuHisPheSerAsnLysCysTyrThrThrPheLysLysTyrIleArgG : 254 !! !|||..!||| !:!|||.!.|||||||||! !! !||||||!!.! !|||!:!| erThrAspGluLeu---TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnG 22883 : GCACAGATGAATTA---TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAAC : 22939 255 : lnHisGlnThrLeuIleAlaTyrCysArgLysIleGluValValPheAsnTrpIleValL : 274 ||||||||.!!||||||! !!:!||| !! !:!!|||! !||||||!.. ||||||| lnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleValL 22940 : AGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTAC : 22999 275 : euGluGlnValLeuMetPheSerLeuLeuIleCysLeuAspGlyTyrGlnIleLeuMetA : 294 ||! !||||||||||||! !|||:!!|||||||||!!! !|||||||||:!!|||:!!! euGlyGlnValLeuMetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeuV 23000 : TCGGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGG : 23059 295 : laAspGluAspIleLys{T} >>>> Target Intron 2 >>>> {hr}ArgSerI : 303 .!..! !!:! ! ! {|} 492 bp {||}||| ! alSerIleGluSerTyr{T}-+ +-{hr}ArgValA 23060 : TGAGTATCGAAAGCTAT{A}at.........................at{CG}CGCGTTG : 23578 304 : lePheSerPheHisIleLeuSerCysLeuCysGlnLeuLeuMetPheSerTyrSerCysA : 323 !|||:!!! ! !:!::!!! ! !!:!! !!||||||! !||||||!!!|||||||||| laPheAlaCysPheLeuMetMetGlyMetSerGlnLeuTrpMetPheThrTyrSerCysA 23579 : CTTTCGCGTGCTTCTTGATGATGGGCATGAGTCAACTATGGATGTTCACGTATAGTTGCG : 23638 324 : spCysIleLeuArgGluSerValSerValAlaThrAlaAlaTyrGluGlyProTrpThrL : 343 |||||||| !! !||||||:!!!:!:!!||| !:!!!.!|||! |||||||||! ! spCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleA 23639 : ATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAA : 23698 344 : euProProMetThrIleSerGlyArgMetMetArgLysAspLeuIleValValIleMetA : 363 ! !|||||| !! !! !|||!:!:!!:!:||||||!!:||| !:!!:!!|||:!!| snLeuProMetAspLysPheGlyLysLeuLeuArgLysGluLeuGlnMetLeuIleLeuA 23699 : ATTTACCAATGGACAAATTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGA : 23758 364 : rgAlaSerIleProCysCysLeuSerGlyLysGlyTyrPheIleValSerLeuGluThrT : 383 |||||!!! !|||! !..!|||!!!!.! |||!:!||| !:!!||||||||||||! rgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrP 23759 : GGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCT : 23818 384 : yrThrSerVal : 386 :!|||!.!||| heThrLysVal 23819 : TTACTAAGGTA : 23829 vulgar: AmOr92PSE 143 386 . KQ414828.1 22307 23829 + 470 M 34 102 5 0 2 I 0 312 3 0 2 M 4 12 G 3 0 M 39 117 G 1 0 M 14 42 G 1 0 M 60 180 S 0 1 5 0 2 I 0 488 3 0 2 S 1 2 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22308 23829 470 + . gene_id 4 ; sequence AmOr92PSE ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22308 22409 . + . KQ414828.1 exonerate:protein2genome:local exon 22308 22409 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22410 22411 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 22410 22725 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 23077 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 23077 . + . insertions 0 ; deletions 5 KQ414828.1 exonerate:protein2genome:local splice5 23078 23079 . + . intron_id 2 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 23078 23569 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 23568 23569 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local cds 23570 23829 . + . KQ414828.1 exonerate:protein2genome:local exon 23570 23829 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22308 23829 470 + . alignment_id 4 ; Query AmOr92PSE ; Align 22308 144 102 ; Align 22726 178 12 ; Align 22738 185 117 ; Align 22855 225 42 ; Align 22897 240 180 ; Align 23572 301 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr92PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 454 Query range: 180 -> 405 Target range: 10831 -> 13164 181 : ValLeuSerLeuTyrGlnIleAlaValSerTyrPheCysPheAspAsnPheLeuCysIle : 200 :!!! !.!!|||||| ! !!.!:!!!!!||||||||||||||||||.!!!!!|||||| IleSerGlyLeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIle 10832 : ATTTCAGGACTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATC : 10889 201 : MetAsnPheHisValAlaGlyGlnPheLysValLeuGlnHisArgIleSerThrIleAla : 220 |||!:! ! |||:!!::!|||||||||::::!!||||||:!!|||:!:!!!! !:!::!! MetSerValHisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSer 10890 : ATGAGCGTGCATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCC : 10949 221 : AspLeuThrIleLysThrGluGluLysLysGluLysLeuIleIleAspSerLeuHisPhe : 240 |||:!! ! !:!!! !...||||||... ::: !:!!:!:!!:..!! ! AspValGlnTyrGlnIleSerGluLysAsnMetGluSerValLeuGluAspCys------ 10950 : GACGTACAATATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGT------ : 11006 241 : SerAsnLysCysTyrThrThrPheLysLysTyrIleArgGlnHisGlnThrLeuIleAla : 260 !!!..!!:!! !||| !! !||||||!..|||:!!|||||||||||||||||||||! ! ThrArgArgSerTyrGluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAsp 11007 : ACACGTAGATCTTACGAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGAT : 11063 261 : TyrCysArgLysIleGluValValPheAsnTrpIleValLeuGluGlnValLeuMetPhe : 280 |||! !..!|||:!!||| !|||!:!!.. |||:!!|||! !|||||||||:!!||| TyrTyrGluLysLeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPhe 11064 : TATTACGAGAAGCTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTC : 11123 281 : SerLeuLeuIleCysLeuAspGlyTyrGlnIleLeuMetAlaAspGluAspIleLysThr : 300 |||:!!|||||||||||| !|||||||||||||||:!!!.!..! ...:!! !! SerValLeuIleCysLeuPheGlyTyrGlnIleLeuLeuValSerIleSerLeuProPro 11124 : AGTGTGTTAATTTGCCTCTTTGGTTATCAGATATTATTGGTTAGTATTTCACTTCCTCCA : 11183 301 : ArgSer{I} >>>> Target Intron 1 >>>> {le}PheSer--PheHisIleL : 309 ! !..!{:} 1303 bp {!!}||||||##|||! !|||! ThrGlu{L}-+ ++{eu}PheSer##PheLeuIleC 11184 : ACTGAA{T}tt.........................ag{TA}TTTTCATGTTCCTCATAT : 12515 310 : euSerCysLeuCysGlnLeuLeuMetPheSerTyrSerCysAspCysIleLeuArgGluS : 329 !.!!..!:!! ! !|||!!!||||||!!!|||||||||:!! :!::!!..!:!!| ysGlyAlaMetValLeuLeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnS 12516 : GTGGCGCCATGGTTTTATTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAA : 12575 330 : erValSerValAlaThrAlaAlaTyrGluGlyProTrpThrLeuProProMetThrIleS : 349 ||! !!:!:!!||| !|||||||||..!!.!! !|||||| ! !||||||!.!! !! erAspAsnIleAlaPheAlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysT 12576 : GCGATAATATTGCTTTTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAA : 12635 350 : erGlyArgMetMetArgLysAspLeuIleValValIleMetArgAlaSerIleProCysC : 369 !!|||!:!! !:!:||| ! |||||||||:!!|||||| !|||:!!!!! ! !|||| hrGlyLysLysLeuArgHisAspLeuIleMetValIleGlyArgSerArgArgValCysC 12636 : CTGGCAAAAAGCTACGGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTT : 12695 370 : ysLeuSerGlyLysGlyTyrPheIleValSerLeuGluThrTyrThr--{S} >>>> T : 385 |||||!!!!.!!!.|||!:!||| !|||||||||||||||||||||##{.} ysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThr##{G}++ 12696 : GTCTGACTGCGAATGGATTTTTCCCTGTGTCCTTAGAAACTTATACTAC{G}gt...... : 12748 386 : arget Intron 2 >>>> {er}ValLeuSerThrAlaAlaSerTyrPheThrLeuLe : 397 357 bp {.!}:::|||||||||||||||||||||||||||||||| +-{lu}IleLeuSerThrAlaAlaSerTyrPheThrLeuLe 12749 : ...................ac{ag}attttgAGTACCGCGGCGTCGTACTTCACATTATT : 13138 398 : uArgAsnAsnIleGluSerGluIle : 405 ||||||||||:!!|||..!! !:!! uArgAsnAsnValGluAspValVal 13139 : GAGAAATAACGTAGAAGATGTAGTT : 13164 vulgar: AmOr92PSE 180 405 . KQ414828.1 10831 13164 + 454 M 58 174 G 2 0 M 62 186 S 0 1 5 0 2 I 0 1299 3 0 2 S 1 2 M 2 6 F 0 2 M 79 237 F 0 2 S 0 1 5 0 2 I 0 353 3 0 2 S 1 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10832 13164 454 + . gene_id 5 ; sequence AmOr92PSE ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 10832 11192 . + . KQ414828.1 exonerate:protein2genome:local exon 10832 11192 . + . insertions 0 ; deletions 2 KQ414828.1 exonerate:protein2genome:local splice5 11193 11194 . + . intron_id 1 ; splice_site "TT" KQ414828.1 exonerate:protein2genome:local intron 11193 12495 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12494 12495 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 12496 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12496 12745 . + . insertions 0 ; deletions 0 ; frameshifts 4 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13102 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13101 13102 . + . intron_id 1 ; splice_site "ac" KQ414828.1 exonerate:protein2genome:local cds 13103 13164 . + . KQ414828.1 exonerate:protein2genome:local exon 13103 13164 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10832 13164 454 + . alignment_id 5 ; Query AmOr92PSE ; Align 10832 181 174 ; Align 11006 241 186 ; Align 12498 304 6 ; Align 12506 306 237 ; Align 13105 386 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr92PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 243 Query range: 177 -> 293 Target range: 37859 -> 38201 178 : ValLeuZedValLeuSerLeuTyrGlnIleAlaValSerTyrPheCysPheAspAsnPhe : 197 ::! !:::!.!||||||:!!||||||:!!::!!.!!!!|||.!!||||||||| ... LeuThrGlnAlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIle 37860 : ctCACGCAGGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatt : 37917 198 : LeuCysIleMetAsnPheHisValAlaGlyGlnPheLysValLeuGlnHisArgIleSer : 217 ... |||::: .!.||||||||||||||||||::::!!||||||:!!||||||:!! PhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAla 37918 : tttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCC : 37977 218 : ThrIleAlaAspLeuThrIleLysThrGluGluLysLysGluLysLeuIleIleAspSer : 237 !.!:!::!!! !|||!:! :!!! !! !:!!!..!..|||!!.! !! !! !|||..! AsnValSerGlyLeuSer---GluIleValLysSerSerGluAsnProSerThrAspGlu 37978 : AATGTGTCAGGTCTAAGC---GAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAA : 38034 238 : LeuHisPheSerAsnLysCysTyrThrThrPheLysLysTyrIleArgGlnHisGlnThr : 257 ||| !:!|||.!.|||||||||! !! !||||||!!.! !|||!:!|||||||||.!! Leu---TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAla 38035 : TTA---TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCA : 38091 258 : LeuIleAlaTyrCysArgLysIleGluValValPheAsnTrpIleValLeuGluGlnVal : 277 ||||||! !!:!||| !! !:!!|||! !||||||!.. |||!.!|||! !|||||| LeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnVal 38092 : CTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTC : 38151 278 : LeuMetPheSerLeuLeuIleCysLeuAspGlyTyrGlnIleLeuMet : 293 ||||||||||||:!!|||||||||!!!! !! !|||||| !|||:!! LeuMetPheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeu 38152 : CTAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTG : 38201 vulgar: AmOr92PSE 177 293 . KQ414828.1 37859 38201 + 243 M 46 138 G 1 0 M 14 42 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37860 38201 243 + . gene_id 6 ; sequence AmOr92PSE ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37860 38201 . + . KQ414828.1 exonerate:protein2genome:local exon 37860 38201 . + . insertions 0 ; deletions 2 KQ414828.1 exonerate:protein2genome:local similarity 37860 38201 243 + . alignment_id 6 ; Query AmOr92PSE ; Align 37860 178 138 ; Align 37998 225 42 ; Align 38040 240 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr92PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 240 Query range: 308 -> 405 Target range: 28550 -> 29251 309 : LeuSerCysLeuCysGlnLeuLeuMetPheSerTyrSerCysAspCysIleLeuArgGlu : 328 :!!!!! !!:!! !!||||||! !||||||!!!|||||||||||||||||| !! !||| MetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGlu 28551 : ATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAA : 28608 329 : SerValSerValAlaThrAlaAlaTyrGluGlyProTrpThrLeuProProMetThrIle : 348 |||:!!!:!:!!||| !:!!!.!|||! |||||||||! ! ! !|||||| SerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLys 28609 : AGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaa : 28668 349 : SerGlyArgMetMetArgLysAspLeuIleValValIleMetArgAlaSerIleProCys : 368 |||:::::::!:|||||||||||| !|||:!!|||:!!||||||!!! !|||! ! PheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSer 28669 : tttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCC : 28728 369 : CysLeuSerGlyLysGlyTyrPheIleValSerLeuGluThrTyrThrSer >>>> Ta : 386 ! !|||!!!!.! |||!:!||| !:!!||||||||||||!:!|||!.! SerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 28729 : TCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt....... : 28784 387 : rget Intron 1 >>>> ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgA : 399 410 bp :!!:!!||||||:!! !||||||||||||||||||!:!. ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysG 28785 : ..................agATCATGAGTACATCAATGTCGTATTTCACATTATTAAAAC : 29231 400 : snAsnIleGluSerGluIle : 405 !. !||||||..! !:!! lnCysIleGluAspThrVal 29232 : AATGTATCGAGGACACGGTT : 29251 vulgar: AmOr92PSE 308 405 . KQ414828.1 28550 29251 + 240 M 77 231 5 0 2 I 0 406 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28551 29251 240 + . gene_id 7 ; sequence AmOr92PSE ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 28551 28781 . + . KQ414828.1 exonerate:protein2genome:local exon 28551 28781 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 28782 28783 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 28782 29191 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 29190 29191 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 29192 29251 . + . KQ414828.1 exonerate:protein2genome:local exon 29192 29251 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28551 29251 240 + . alignment_id 7 ; Query AmOr92PSE ; Align 28551 309 231 ; Align 29192 386 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr92PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 305 -> 386 Target range: 38517 -> 38760 306 : PheHisIleLeuSerCysLeuCysGlnLeuLeuMetPheSerTyrSerCysAspCysIle : 325 ||| ! :!!!!! !!:!! !!||||||! !||||||!!!|||||||||||||||||| PheAlaThrMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIle 38518 : TTCGCAACGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATA : 38575 326 : LeuArgGluSerValSerValAlaThrAlaAlaTyrGluGlyProTrpThrLeuProPro : 345 !! !||||||:!!!:!:!!||| !:!!!.!|||! |||||||||! ! ! !||| ThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuPro 38576 : ACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCA : 38635 346 : MetThrIleSerGlyArgMetMetArgLysAspLeuIleValValIleMetArgAlaSer : 365 ||| |||:::::::!:|||||||||||| !|||:!!|||:!!||||||!!! MetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArg 38636 : ATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGA : 38695 366 : IleProCysCysLeuSerGlyLysGlyTyrPheIleValSerLeuGluThrTyrThrSer : 385 !|||! !! !|||!!!!.! |||!:!||| !:!!||||||||||||!:!|||!.! ArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys 38696 : CGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAG : 38755 386 : Val : 386 ||| Val 38756 : GTA : 38760 vulgar: AmOr92PSE 305 386 . KQ414828.1 38517 38760 + 204 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38518 38760 204 + . gene_id 8 ; sequence AmOr92PSE ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38518 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38518 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38518 38760 204 + . alignment_id 8 ; Query AmOr92PSE ; Align 38518 306 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr92PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 60 -> 145 Target range: 21885 -> 22143 61 : IleArgAlaCysLeuPheSerThrSerAsnThrLeuSerLeuIleLeuProLeuLeuLys : 80 ...:::..!|||:!!!:!! !.!!!!!|||!:!|||:!!|||:!!||| !:!!:!!||| PheGlnValCysMetTyrMetAlaCysAsnSerLeuAlaLeuValLeuAspIleIleLys 21886 : tttcaggTTTGCATGTACATGGCATGCAACAGTTTAGCCCTGGTTTTGGATATAATCAAG : 21943 81 : IlePheIleLeuLeuCysHisLysGlnAspPhePheArgLeuValLeuTyrMetLysArg : 100 ||||||:!!|||||| !..|||:!! ! |||.!! !!|||:!! !||||||:!!!:! IlePheValLeuLeuValArgLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLys 21944 : ATTTTCGTCCTACTCGTACGGAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAG : 22003 101 : AsnPheLeu<->UnkAsnTyrAspAspHisGluArgLysIleValIleGlyCysAsnGln : 119 ||||||! ! |||||||||.!. !!|||!.!...|||:!! ! !...!!.!:! AsnPheTrpHisLeuAsnTyrAspGlnAspGluAsnSerIleIleAlaHisAlaLysArg 22004 : AATTTTTGGCATTTGAACTACGACCAGGACGAGAATTCTATTATCGCACACGCGAAACGA : 22063 120 : LysCysThrPhePheIleCysPhePheThrPheLeuThrIleAlaThrThrAlaSerTyr : 139 ! !|||! !!:!|||:!!||| !!|||:!!|||! !:!! !:!!|||..! !|||||| ThrCysIleTyrPheValCysValPheSerPheCysSerGlnSerThrValPheSerTyr 22064 : ACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTAT : 22123 140 : MetValIleProLeuIle : 145 !!::!!! |||!!!:!! IleIleArgProPheVal 22124 : ATAATAAGGCCATTTGTA : 22143 vulgar: AmOr92PSE 60 145 . KQ414828.1 21885 22143 + 174 M 43 129 G 0 3 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21886 22143 174 + . gene_id 9 ; sequence AmOr92PSE ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 21886 22143 . + . KQ414828.1 exonerate:protein2genome:local exon 21886 22143 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21886 22143 174 + . alignment_id 9 ; Query AmOr92PSE ; Align 21886 61 129 ; Align 22018 104 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr92PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 143 -> 185 Target range: 27339 -> 27465 144 : LeuIleValAsnIleGlyLysAsnGluSerAspArgValLeuProPheAsnMetTrpVal : 163 ::::::...|||:!!|||||||||||||||||||||! !! ! !|||:!!|||||| !! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPhe 27340 : attttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTC : 27397 164 : AsnLeuProLeuSerMetThrProTyrPheGluIleSerPheValLeuZedValLeuSer : 183 :!!||||||||||||:!:|||||||||:::||||||:::::!:!!:!!:::|||||| !! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 27398 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 27457 184 : LeuTyr : 185 :!!!:! IlePhe 27458 : ATTTTC : 27465 vulgar: AmOr92PSE 143 185 . KQ414828.1 27339 27465 + 139 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27340 27465 139 + . gene_id 10 ; sequence AmOr92PSE ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27340 27465 . + . KQ414828.1 exonerate:protein2genome:local exon 27340 27465 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27340 27465 139 + . alignment_id 10 ; Query AmOr92PSE ; Align 27340 144 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr92PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 143 -> 185 Target range: 37450 -> 37576 144 : LeuIleValAsnIleGlyLysAsnGluSerAspArgValLeuProPheAsnMetTrpVal : 163 ::: ...|||:!!|||||||||||||||||||||! !! ! !!:!:!!||||||:!! IleSerAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 37451 : atttcagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 37508 164 : AsnLeuProLeuSerMetThrProTyrPheGluIleSerPheValLeuZedValLeuSer : 183 :!!||||||||||||!!:|||||||||:::||||||:::::!:!!:!!:::|||||| !! AspLeuProLeuSerIleThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 37509 : GATCTACCATTATCCATAACAccatattatgaaattacttACATAATACAGGTATTACCA : 37568 184 : LeuTyr : 185 :!!!:! IlePhe 37569 : ATTTTC : 37576 vulgar: AmOr92PSE 143 185 . KQ414828.1 37450 37576 + 134 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37451 37576 134 + . gene_id 11 ; sequence AmOr92PSE ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37451 37576 . + . KQ414828.1 exonerate:protein2genome:local exon 37451 37576 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37451 37576 134 + . alignment_id 11 ; Query AmOr92PSE ; Align 37451 144 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1079 Query range: 4 -> 389 Target range: 718 -> 4453 5 : AsnValArgAsnLeuSerIleThrValThrAlaPheTyrMetLysValAlaGlyPheTrpVa : 25 ||| !|||:!!:!!:!!:!:||||||||||||||||||:!!|||:!! !|||||||||:! AsnAsnArgAspIleAlaValThrValThrAlaPheTyrLeuLysIleIleGlyPheTrpLe 719 : AATAACAGGGACATAGCGGTGACCGTTACGGCTTTCTACTTGAAAATTATCGGCTTCTGGTT : 779 26 : lAlaAsnAsnTyrAlaGluLysArgArgArgAsnValAlaMetPheValThrIlePhePheA : 46 !|||:!!!.!|||! !|||||||||||||||... |||..! ! !!|||||||||.!. uAlaAspThrTyrGluGluLysArgArgArgLysPheAlaGlnAsnPheThrIlePheMetL 780 : AGCTGACACTTACGAGGAGAAacgtcgaagaaaattcgcgcAGAATTTCACGATATTTATGC : 842 47 : laPheMetGlyIleSerIleGluGlyArgAspLeuTyrPheAlaTrpGlyAspPheGlu > : 66 ! ! !.!:!: !|||||| !||||||:!!|||!:!.!!||||||||||||... euValCysAlaValValIleGluThrArgAspIleTyrTyrThrTrpGlyAspPheSer++ 843 : TGGTGTGCGCTGTGGTAATTGAGACGAGGGATATCTATTACACCTGGGGTGATTTCAGCgt. : 904 67 : >>> Target Intron 1 >>>> AspSerIlePheAlaGlyCysAsnValIleThrIle : 77 1408 bp ! !:!!!:! ! !||||||:!!:!!|||:!: ++IleValValTyrIleMetCysAsnIleLeuThrLeu 905 : ........................agATCGTTGTATACATAATGTGCAACATTCTAACACTG : 2343 78 : ValLeuValLeuLeuLysIlePheValLeuTyrIleAsnAsnGluGluLeuLeuAsnValVa : 98 ! !:!! !|||!!!|||||||||:!!! ! !:!!!.:!!:!!||||||...::::: GlyIleSerLeuPheLysIlePheLeuSerMetTrpSerLysLysLysLeuLeuGluLeuIl 2344 : GGCATAAGTTTGTTCAAGATCTTTCTCTCGATGTGGAGTAAGAAAAAACttttggaattaat : 2406 99 : lAsnTyrAlaLysThrAsnPheTrpArgGluSerAsnTyrGluProHisGluLysLysIleI : 119 :...:::|||!:!|||||||||||| .!.|||:!!|||!!: !!!!.|||:!!! |||: eLysPheAlaArgThrAsnPheTrp---HisSerAspTyrAspSerGlnGluGlnIleIleV 2407 : taaattcgccAGAACGAATTTCTGG---CATTCGGATTATGACTCGCAGGAGCAAATTATTG : 2466 120 : leAspAspTyrArgArgLeuCysSerPheLeuValCysSerPheThrPhePheAlaGlnGly : 139 !::!!!!:! !!:!||| !|||!!!||||||:!!||| !|||!.!|||||||||.!.||| alAsnGluCysLysArgThrCysThrPheLeuIleCysValPheAsnPhePheAlaAsnGly 2467 : TGAACGAGTGTAAACGCACTTGTACATTCCTTATATGCGTGTTTAATTTCTTCGCTAATGGG : 2526 140 : ThrValValCysPheValIleThrProValPhe{V} >>>> Target Intron 2 >>> : 151 |||||| ! ! !:!:!!|||! !|||:!! ! {!} 318 bp ThrValSerGlyTyrIleIleArgProIleVal{A}++ 2527 : ACAGTGTCTGGATACATAATCAGGCCAATTGTA{G}gt........................ : 2565 152 : > {al}AsnAsnGlyLysAsnGluSerAspArgIleHisProPheAsnMetTrpPheAspA : 170 {.!}!:: |||||||||||||||||||||:!!! ! ! !!|||.!.|||.!!|||! ++{la}SerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspL 2566 : .ag{CA}AgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACC : 2937 171 : rgSerLeuSerLeuSerProTyrTyrGluIleIleTyrThrIleGln >>>> Target I : 186 ! !!:!!!!!:!!!!!|||||||||||||||::::::||||||||| 406 euProIleThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2938 : TGCCGATAACCATCACACCATactatgaaatattatttacgaTACAGgt............. : 2987 187 : ntron 3 >>>> ValLeuSerAlaTyrGluIleGlyIleCysTyrHisCysPheAspAsn : 201 bp :!!!!!! ! ! ! :!! !!||| !!|||! !|||.!!|||||| ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsn 2988 : ............agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAAT : 3436 202 : LeuLeuPheValIleAsnLeuTyrThrAlaGlyGlnPheArgIleLeuArgTyrArgPheGl : 222 !!!|||! !:!!|||||||||:!!|||||| !|||||||||||||||!:!||||||.!... PheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSe 3437 : TTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTC : 3499 223 : uAsnIleCysGlyLysAsnAspAspLysAsnTyrTyrLysValSerLysSerSerLysTyrC : 243 !|||:!:|||||| !|||!!: !!..::: ... ...|||::: !!... !!! rAsnValCysGlyAlaAsnGluArgSerAspLysIleSer---LysLysThrProSerAsnS 3500 : GAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttcg---aaaaaaacaCCGTCCAATT : 3559 244 : ysIleAsnGluTyrLysSerPheLysThrCysValGlnGlnHisGlnAlaLeuIleGluTyr : 263 !.!. ||| !.!||||||!.!|||:!!||||||||||||||||||||||||||| erAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyr 3560 : CGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATAC : 3619 264 : CysLysLysLeuGluAspValPheSerIleIleValLeuAlaGlnValLeuLeuPheSerLe : 284 |||!!.||||||:!!!!:||||||.!!|||.!!||||||||||||||||||||||||||||| CysAsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLe 3620 : TGTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTT : 3682 285 : uLeuIleCysLeuAspGlyTyrLeuValLeuMet >>>> Target Intron 4 >>>> : 296 ||||!!:||||||||||||||||||||| ||| 457 bp uLeuMetCysLeuAspGlyTyrLeuVal---Met++ + 3683 : GTTAATGTGCCTCGATGGATATTTGGTG---ATGgt.........................a : 4170 297 : GluAspThrSerArgAlaLysArgValIlePheThrPheHisLeuMetGlyCysMetCysG : 316 ||||||||| !!! ! !:!!|||:!!! !||| !|||||||||! !||||||:!!|||| +GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysG 4171 : gGAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCC : 4232 317 : lnLeuLeuMetPheThrTyrSerCysAspCysLeuMetHisAspSerMetSerValAlaAsn : 336 |||||||||||||||||||||||||||||||||||!!:!..!!:|||:!!!:!||||||||| lnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsn 4233 : AACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAAT : 4292 337 : AlaAlaTyrAsnSerLeuTrpProCysLeuProMetAspLysTyrGlyLysSerLeuArgLy : 357 ||| !|||:!!!!!! !||| ! !||||||||||||!:!! !|||::!! !|||||||| AlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLy 4293 : GCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAA : 4355 358 : sAspLeuThrPheValIleMetArgSerArgSerProCysCysLeuThrAlaCysGlyPheP : 378 ||||||||||||||||||| ||||||||| !|||||||||||||||||||||||||||| sAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPheP 4356 : AGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCT : 4418 379 : heProValSerLeuGluThrTyrThrGlyIleLeu : 389 ||||||||||||||||||||||||||..!:!!:!! heProValSerLeuGluThrTyrThrSerValIle 4419 : TCCCTGTGTCACTGGAAACGTACACTTCGGTAATT : 4453 vulgar: AmOr88 4 389 . KQ414828.1 718 4453 + 1079 M 61 183 5 0 2 I 0 1404 3 0 2 M 41 123 G 1 0 M 43 129 S 0 1 5 0 2 I 0 314 3 0 2 S 1 2 M 34 102 5 0 2 I 0 402 3 0 2 M 50 150 G 1 0 M 57 171 G 1 0 M 1 3 5 0 2 I 0 453 3 0 2 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 719 4453 1079 + . gene_id 1 ; sequence AmOr88 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 719 901 . + . KQ414828.1 exonerate:protein2genome:local exon 719 901 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 902 903 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 902 2309 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 2308 2309 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 2310 2562 . + . KQ414828.1 exonerate:protein2genome:local exon 2310 2562 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 2563 2564 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 2563 2880 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 2879 2880 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 2881 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2881 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 3 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 0 ; deletions 2 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4453 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4453 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 719 4453 1079 + . alignment_id 1 ; Query AmOr88 ; Align 719 5 183 ; Align 2310 66 123 ; Align 2433 108 129 ; Align 2883 152 102 ; Align 3391 186 150 ; Align 3541 237 171 ; Align 3712 295 3 ; Align 4172 296 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 864 Query range: 6 -> 388 Target range: 21048 -> 23829 7 : ArgAsnLeuSerIleThrValThrAlaPheTyrMetLysValAlaGlyPheTrpValAla : 26 !:!:!!:!!|||:!!! !:!!.!! !||||||:!! ! |||!.!||||||||| !!||| GlnAspValSerValArgLeuAlaAsnPheTyrLeuTyrValValGlyPheTrpPheAla 21049 : CAAGACGTTTCCGTTAGATTAGCCAATTTTTATCTGTATGTCGTCGGCTTCTGGTTCGCC : 21106 27 : AsnAsnTyrAlaGluLysArgArgArgAsnValAlaMetPheValThrIlePhePheAla : 46 !||| ! !|||:!! !! ! !!|||!.!|||!!:.!. !|||||| !! !.! AlaAsnArgIleGluGluTrpPheGlyAsnAlaAlaIleLeuTyrThrIleValThrVal 21107 : GCTAATCGTATAGAGGAATGGTTCGGAAACGCGGCGATTCTGTATACCATTGTCACGGTC : 21166 47 : PheMetGlyIleSerIleGluGlyArgAspLeuTyrPheAlaTrpGlyAspPheGlu > : 66 |||.!.! !!!:!!!:!!:!! !|||! |||||||||:!!||||||:!!|||||| PhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSerTrpGlyAsnPheGlu++ 21167 : TTCTTTGTCATGTGGCTTCAGCTGAGAGGACTTTATTTCTCCTGGGGAAACTTTGAAgt. : 21228 67 : >>> Target Intron 1 >>>> AspSerIlePheAlaGlyCysAsnValIleThrI : 77 666 bp !!!!!!:!:! !!.!|||||| !:!!.!!: ++ValCysMetTyrMetAlaCysAsnSerLeuAlaL 21229 : ........................aggTTTGCATGTACATGGCATGCAACAGTTTAGCCC : 21925 78 : leValLeuValLeuLeuLysIlePheValLeuTyrIleAsnAsnGluGluLeuLeuAsnV : 97 !:||||||! !:!!:!!||||||||||||||| !:!!...!!.:!!:!!!!!|||..!: euValLeuAspIleIleLysIlePheValLeuLeuValArgLysLysLysPheLeuGlyL 21926 : TGGTTTTGGATATAATCAAGATTTTCGTCCTACTCGTACGGAAGAAAAAGTTTCTCGGTC : 21985 98 : alValAsnTyrAlaLysThrAsnPheTrpArgGluSerAsnTyrGluProHisGluLysL : 117 !!:!!.!.||| !:!!! !||||||||| .!.! !||||||!!:! ! !!|||!!.. euIleGluTyrMetGlnLysAsnPheTrp---HisLeuAsnTyrAspGlnAspGluAsnS 21986 : TGATTGAGTACATGCAGAAGAATTTTTGG---CATTTGAACTACGACCAGGACGAGAATT : 22042 118 : ysIleIleAspAspTyrArgArgLeuCysSerPheLeuValCysSerPheThrPhePheA : 137 ..||||||! !! !:!||| !|||! !!:!!!!|||||| !|||:!!|||! !: erIleIleAlaHisAlaLysArgThrCysIleTyrPheValCysValPheSerPheCysS 22043 : CTATTATCGCACACGCGAAACGAACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTT : 22102 138 : laGlnGlyThrValValCysPheValIleThrProValPhe{V} >>>> Target In : 151 !!|||..!|||||| !!! !!:!:!!|||! !||| !! ! { } 170 erGlnSerThrValPheSerTyrIleIleArgProPheVal{S}++ 22103 : CTCAATCTACAGTTTTTTCCTATATAATAAGGCCATTTGTA{T}gt.............. : 22147 152 : tron 2 >>>> {al}AsnAsnGlyLysAsnGluSerAspArgIleHisProPheAsnM : 166 bp { !}||| !||||||||||||||||||||| !||| !!:!:!!| ++{er}AsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspM 22148 : ...........ag{ca}AATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATA : 22359 167 : etTrpPheAspArgSerLeuSerLeuSerProTyrTyrGluIleIleTyrThrIleGln : 186 |||||.!!|||! ! !!||||||:!!!!!||||||||||||||| |||! !|||||| etTrpLeuAspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGln+ 22360 : TGTGGCTCGATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGg : 22419 187 : >>>> Target Intron 3 >>>> ValLeuSerAlaTyrGluIleGlyIleCysTy : 196 307 bp !.!||||||!.!|||:!!:!!.!! ||||| + ++AlaLeuSerValTyrGlnValSerAlaCysTy 22420 : t.........................agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTA : 22756 197 : rHisCysPheAspAsnLeuLeuPheValIleAsnLeuTyrThrAlaGlyGlnPheArgIl : 216 |! !||||||||| :::...|||:::::: |||:!!..!||||||||||||||||| rLeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIl 22757 : CCTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTAT : 22816 217 : eLeuArgTyrArgPheGluAsnIleCysGlyLysAsnAsp<->AspLysAsnTyrTyrLy : 235 ||||!:!||||||.!!! |||:!:! ||| !!:!!!: ! |||!:! ! ! !! eLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluAs 22817 : ACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAA : 22876 236 : sValSerLysSerSerLysTyrCysIleAsnGluTyrLysSerPheLysThrCysValGl : 255 . !|||! !..!..! !|||! !!. |||! !.!||||||!.!|||:!!|| nProSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGl 22877 : TCCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCA : 22936 256 : nGlnHisGlnAlaLeuIleGluTyrCysLysLysLeuGluAspValPheSerIleIleVa : 275 ||||||||||||||||||||||!:!||| !! !||||||!!:||||||!!!:!!||||| nGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleVa 22937 : ACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGT : 22996 276 : lLeuAlaGlnValLeuLeuPheSerLeuLeuIleCysLeuAspGlyTyrLeuValLeuMe : 295 ||||!.!|||||||||:!!! !|||:!!|||||||||!!! !||||||! !||||||:! lLeuGlyGlnValLeuMetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLe 22997 : ACTCGGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCT : 23056 296 : t >>>> Target Intron 4 >>>> GluAspThrSerArgAlaLysArgValIle : 305 ! 492 bp ! ! !||| !! !..!|||||| ! u++ ++IleLysLeuSerPheGluSerArgValAla 23057 : Ggt.........................agATAAAGTTATCATTTGAATCGCGCGTTGCT : 23578 306 : PheThrPheHisLeuMetGlyCysMetCysGlnLeuLeuMetPheThrTyrSerCysAsp : 325 |||.!!! ! !|||||| ! !!||| !!||||||! !||||||||||||||||||||| PheAlaCysPheLeuMetMetGlyMetSerGlnLeuTrpMetPheThrTyrSerCysAsp 23579 : TTCGCGTGCTTCTTGATGATGGGCATGAGTCAACTATGGATGTTCACGTATAGTTGCGAT : 23638 326 : CysLeuMetHisAspSerMetSerValAlaAsnAlaAlaTyrAsnSerLeuTrpProCys : 345 |||:!!! !!:|||:!!!:!:!!|||.!.:!!!.!||| !.!!! !||| ! ! CysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsn 23639 : TGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAAT : 23698 346 : LeuProMetAspLysTyrGlyLysSerLeuArgLysAspLeuThrPheValIleMetArg : 365 |||||||||||||||!:!|||||| !|||||||||!!:||| !.!.:!!|||:!!||| LeuProMetAspLysPheGlyLysLeuLeuArgLysGluLeuGlnMetLeuIleLeuArg 23699 : TTACCAATGGACAAATTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGG : 23758 366 : SerArgSerProCysCysLeuThrAlaCysGlyPhePheProValSerLeuGluThrTyr : 385 :!!||| !!|||! !..!||||||||||||||||||||| !!:!!||||||||||||!:! AlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPhe 23759 : GCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTT : 23818 386 : ThrGlyIle : 388 ||| !:!! ThrLysVal 23819 : ACTAAGGTA : 23829 vulgar: AmOr88 6 388 . KQ414828.1 21048 23829 + 864 M 59 177 5 0 2 I 0 662 3 0 2 M 41 123 G 1 0 M 43 129 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 34 102 5 0 2 I 0 303 3 0 2 M 44 132 G 0 3 M 66 198 5 0 2 I 0 488 3 0 2 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21049 23829 864 + . gene_id 2 ; sequence AmOr88 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 21049 21225 . + . KQ414828.1 exonerate:protein2genome:local exon 21049 21225 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 21226 21227 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 21226 21891 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 21890 21891 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 21892 22144 . + . KQ414828.1 exonerate:protein2genome:local exon 21892 22144 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 22145 22146 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22145 22314 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 22313 22314 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 22315 22418 . + . KQ414828.1 exonerate:protein2genome:local exon 22315 22418 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22419 22420 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22419 22725 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 23058 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23059 23060 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23059 23550 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 23549 23550 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 23551 23829 . + . KQ414828.1 exonerate:protein2genome:local exon 23551 23829 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21049 23829 864 + . alignment_id 2 ; Query AmOr88 ; Align 21049 7 177 ; Align 21892 66 123 ; Align 22015 108 129 ; Align 22317 152 102 ; Align 22726 186 132 ; Align 22861 230 198 ; Align 23551 296 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 640 Query range: 148 -> 389 Target range: 17818 -> 19638 149 : ValPheValAsnAsnGlyLysAsnGluSerAspArgIleHisProPheAsnMetTrpPhe : 168 :!!!!....||| |||||||||||||||!!:||||||! !||||||||||||||| !! IleLeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpVal 17819 : ATTTTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTC : 17876 169 : AspArgSerLeuSerLeuSerProTyrTyrGluIleIleTyrThrIleGln >>>> Ta : 186 :!! ! !!||||||:!!!!!||||||||||||||| :::::::::||| AsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln++ 17877 : AACTTGCCATTATCAATGACGCCATATTACgaaataactttttcattaCAGgt....... : 17932 187 : rget Intron 1 >>>> ValLeuSerAlaTyrGluIleGlyIleCysTyrHisCysP : 199 110 bp ||||||||| !|||.!.||||||:!: !!||| !|||| ++ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysP 17933 : ..................aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgct : 18079 200 : heAspAsnLeuLeuPheValIleAsnLeuTyrThrAlaGlyGlnPheArgIleLeuArgT : 219 ||||||||...||| ::!!!:||||||:!!.!!||| !|||||||||:!!|||!:!| heAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnT 18080 : tcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAAT : 18139 220 : yrArgPheGluAsnIleCysGlyLysAsnAsp<-><-><-><->AspLysAsnTyrTyrL : 235 |||||.!.! !|||!!: !! ! !!!.||| ::::::||| ! ! yrArgMetAlaAsnMetThrAspLeuLysAspLysGluArgLysGluArgAsnMetLysT 18140 : ACCGAATGGCGAATATGACCGATTTAAAGGacaaagagaggaaagagagaaatatgaAGA : 18199 236 : ysValSerLysSerSerLysTyrCysIleAsnGluTyrLysSerPheLysThrCysValG : 255 ! ! !!..|||:!! !:!...! !.!. |||!!. !.!!||| !! !:!!: hrSerValSerSerAlaCysPheAlaThrGluCysTyrAsnValLeuLysAspTyrIleA 18200 : CAAGTGTGAGTTCGGCGTGCTTTGCAACAGAATGTTACAACGTTCTCAAAGATTATATCA : 18259 256 : lnGlnHisGlnAlaLeuIleGluTyrCysLysLysLeuGluAspValPheSerIleIleV : 275 :!||||||||| !||||||! ||||||!!.||||||||| ! ||||||!:!||||||| rgGlnHisGlnAsnLeuIleAlaTyrCysAsnLysLeuGluLysValPheAsnIleIleV 18260 : GACAGCATCAGAACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGTTCAATATCATTG : 18319 276 : alLeuAlaGlnValLeuLeuPheSerLeuLeuIleCysLeuAspGlyTyrLeuValLeuM : 295 |||||!.!|||:!!|||:!!||||||:!!||||||||||||||||||!:!! !:!!|||| alLeuGlyGlnLeuLeuMetPheSerMetLeuIleCysLeuAspGlyPheGlnIleLeuM 18320 : TTCTGGGGCAATTGTTAATGTTCAGCATGTTGATCTGTCTCGATGGATTTCAGATACTTA : 18379 296 : et >>>> Target Intron 2 >>>> GluAspThrSerArgAlaLysArgValIl : 305 || 975 bp ! !:!!||| !!! ! !! |||:!!|| et++ ++AlaAsnThrProThrArgThrArgLeuIl 18380 : TGgt.........................agGCAAATACACCTACCAGAACCCGACTGAT : 19384 306 : ePheThrPheHisLeuMetGlyCysMetCysGlnLeuLeuMetPheThrTyrSerCysAs : 325 ||||! !||||||:!! !.!|||||||||||||||||||||||||||||||||||||| ePheIlePheHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSerCysAs 19385 : TTTCATCTTTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGCTGCGA : 19444 326 : pCysLeuMetHisAspSerMetSerValAlaAsnAlaAlaTyrAsnSerLeuTrpProCy : 345 ||||:!!!!:...!!:|||! !|||..!|||.!.|||!.!|||!:!.!!! !||| !! pCysIleIleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyProTrpThrLe 19445 : CTGCATCATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGACACT : 19504 346 : sLeuProMetAspLysTyrGlyLysSerLeuArgLysAspLeuThrPheValIleMetAr : 365 !|||||||||..! ! !!||||||! !:!!||||||||||||! !.!!||||||||||| uLeuProMetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuValIleMetAr 19505 : TTTACCAATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCATGAG : 19564 366 : gSerArgSerProCysCysLeuThrAlaCysGlyPhePheProValSerLeuGluThrTy : 385 ||||!!! !|||||||||||||||||| ! ||||||||| !||||||||||||||||| gSerSerValProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGluThrTy 19565 : ATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAACGTA : 19624 386 : rThrGlyIleLeu : 389 |||||||:!!:!! rThrGlyValIle 19625 : CACAGGGGTAATC : 19638 vulgar: AmOr88 148 389 . KQ414828.1 17818 19638 + 640 M 37 111 5 0 2 I 0 106 3 0 2 M 44 132 G 0 12 M 66 198 5 0 2 I 0 971 3 0 2 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17819 19638 640 + . gene_id 3 ; sequence AmOr88 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17819 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17819 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18381 . + . insertions 12 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19638 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19638 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17819 19638 640 + . alignment_id 3 ; Query AmOr88 ; Align 17819 149 111 ; Align 18040 186 132 ; Align 18184 230 198 ; Align 19357 296 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 516 Query range: 172 -> 388 Target range: 32765 -> 33822 173 : SerLeuSerProTyrTyrGluIleIleTyrThrIleGlnValLeuSerAlaTyrGluIle : 192 ..!:!!! !||| ::: ||| !! |||!.!||||||!.!|||:!!:!! GlnMetIleProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnVal 32766 : CAAATGATTCCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTT : 32823 193 : GlyIleCysTyrHisCysPheAspAsnLeuLeuPheValIleAsnLeuTyrThrAlaGly : 212 |||:!:||||||! !||||||||||||:::...|||:::::: !|||:!!..!|||||| GlyValCysTyrLeuCysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGly 32824 : GGAGTGTGTTACCTTTGCTttgataacatttttttcattatgtgTCTACACGTGGCTGGT : 32883 213 : GlnPheArgIleLeuArgTyrArgPheGluAsnIleCysGlyLysAsnAsp<->AspLys : 231 |||||||||||||||!:!||||||.!!! |||:!:! ||| !!:!!!: ! ||| GlnPheArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLys 32884 : CAGTTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAG : 32943 232 : AsnTyrTyrLysValSerLysSerSerLysTyrCysIleAsnGluTyrLysSerPheLys : 251 !:! !! !!!!...!|||! !:!!..! !|||! !!. |||! !.!|||||| SerAsnAspAsnThrSerThrAlaGluLeuTyrSerGluLysCysTyrIleLysPheLys 32944 : AGCAATGATAATACAAGCACGGCTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAG : 33003 252 : ThrCysValGlnGlnHisGlnAlaLeuIleGluTyrCysLysLysLeuGluAspValPhe : 271 !.!|||:!!||||||||||||||||||||||||:::|||::: ||||||!!:|||||| AsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysGluIleLeuGluGluValPhe 33004 : AATTGCATTCAACAACATCAGGCACTaattgaattttgtgaaatactCGAAGAGGTATTC : 33063 272 : SerIleIleValLeuAlaGlnValLeuLeuPheSerLeuLeuIleCysLeuAspGlyTyr : 291 !!!:!!|||||||||!.!|||||||||:!!||||||:!!:!!||||||!!!! !|||||| ThrValIleValLeuGlyGlnValLeuMetPheSerIleIleIleCysPheAlaGlyTyr 33064 : ACGGTAATCGTACTCGGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTAT : 33123 292 : LeuValLeuMet >>>> Target Intron 1 >>>> GluAspThrSerArgAlaL : 302 !||||||:!! 406 bp ! ! !! !! !. GluValLeuLeu++ ++IleThrLeuProPheGluS 33124 : GAAGTACTCCTGgt.........................agATAACGTTACCATTTGAAT : 33562 303 : ysArgValIlePheThrPheHisLeuMetGlyCysMetCysGlnLeuLeuMetPheThrT : 322 .!|||||| !||||||! ! !|||!!: ! !!:!! !!||||||! !|||||||||| erArgValAlaPheThrCysPheLeuIleThrGlyValSerGlnLeuTrpMetPheThrT 33563 : CGCGCGTTGCTTTCACGTGCTTCTTGATTACGGGCGTGAGTCAACTATGGATGTTCACGT : 33622 323 : yrSerCysAspCysLeuMetHisAspSerMetSerValAlaAsnAlaAlaTyrAsnSerL : 342 ||||||||:!!|||:!!! !!:|||:!!!:!:!!|||.!.:!!!.!||| !.!!! yrSerCysAsnCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyP 33623 : ACAGTTGCAATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGAC : 33682 343 : euTrpProCysLeuProMetAspLysTyrGlyLysSerLeuArgLysAspLeuThrPheV : 362 !||| ! !|||||||||||||||:::|||||| ||||||||||||||| ! ! : roTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValL 33683 : CATGGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAGGATTTACAAGTGC : 33742 363 : alIleMetArgSerArgSerProCysCysLeuThrAlaCysGlyPhePheProValSerL : 382 !!|||:!!|||:!!||| !!|||! !..!||||||||||||||||||||| !!:!!!!!| euIleLeuArgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleThrL 33743 : TCATCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATAACTC : 33802 383 : euGluThrTyrThrGlyIle : 388 ||||||||!:!||| !::: euGluThrPheThrLysVal 33803 : TCGAAACCTTTACTAAGGta : 33822 vulgar: AmOr88 172 388 . KQ414828.1 32765 33822 + 516 M 57 171 G 0 3 M 66 198 5 0 2 I 0 402 3 0 2 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32766 33822 516 + . gene_id 4 ; sequence AmOr88 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32766 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32766 33137 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33822 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33822 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32766 33822 516 + . alignment_id 4 ; Query AmOr88 ; Align 32766 173 171 ; Align 32940 230 198 ; Align 33544 296 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 377 Query range: 148 -> 295 Target range: 37450 -> 38201 149 : ValPheValAsnAsnGlyLysAsnGluSerAspArgIleHisProPheAsnMetTrpPhe : 168 ::: ...||| !||||||||||||||||||||| !||| !!:!:!!||||||.!! IleSerAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 37451 : atttcagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 37508 169 : AspArgSerLeuSerLeuSerProTyrTyrGluIleIleTyrThrIleGln >>>> Ta : 186 |||! ! !!||||||:!!!!!||||||||||||||| |||! !|||||| AspLeuProLeuSerIleThrProTyrTyrGluIleThrTyrIleIleGln++ 37509 : GATCTACCATTATCCATAACAccatattatgaaattacttACATAATACAGgt....... : 37564 187 : rget Intron 1 >>>> ValLeuSerAlaTyrGluIleGlyIleCysTyrHisCysP : 199 307 bp !.!||||||!.!|||:!!:!!.!! ||||||! !|||| ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysP 37565 : ..................agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCt : 37908 200 : heAspAsnLeuLeuPheValIleAsnLeuTyrThrAlaGlyGlnPheArgIleLeuArgT : 219 ||||| :::...|||:::::: |||:!!..!|||||||||||||||||||||!:!| heAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnT 37909 : ttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAAT : 37968 220 : yrArgPheGluAsnIleCysGlyLysAsnAsp<->AspLysAsnTyrTyrLysValSerL : 238 |||||.!!! |||:!:! ||| !!:!!!: ! |||!:! ! ! !!. !|||! yrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSerT 37969 : ACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCA : 38028 239 : ysSerSerLysTyrCysIleAsnGluTyrLysSerPheLysThrCysValGlnGlnHisG : 258 !..!..! !|||! !!. |||! !.!||||||!.!|||:!!|||||||||| hrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisG 38029 : CAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATC : 38088 259 : lnAlaLeuIleGluTyrCysLysLysLeuGluAspValPheSerIleIleValLeuAlaG : 278 ||||||||||||||!:!||| !! !||||||!!:||||||!!!:!!|||!.!|||!.!| lnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyG 38089 : AGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGAC : 38148 279 : lnValLeuLeuPheSerLeuLeuIleCysLeuAspGlyTyrLeuValLeuMet : 295 ||||||||:!!||||||:!!|||||||||!!!! !! !|||! !!.!|||:!! lnValLeuMetPheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeu 38149 : AAGTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTG : 38201 vulgar: AmOr88 148 295 . KQ414828.1 37450 38201 + 377 M 37 111 5 0 2 I 0 303 3 0 2 M 44 132 G 0 3 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37451 38201 377 + . gene_id 5 ; sequence AmOr88 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37451 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37451 37561 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 38201 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 38201 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37451 38201 377 + . alignment_id 5 ; Query AmOr88 ; Align 37451 149 111 ; Align 37869 186 132 ; Align 38004 230 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 372 Query range: 6 -> 190 Target range: 31123 -> 32512 7 : ArgAsnLeuSerIleThrValThrAlaPheTyrMetLysValAlaGlyPheTrpValAla : 26 !:!:!!:!!|||.!!! !:!!.!! !|||!:!:!! ! |||!.!||||||||| !!||| GlnAspValSerPheArgLeuAlaAsnPhePheLeuTyrValValGlyPheTrpPheAla 31124 : CAAGACGTTTCCTTTAGATTAGCCAACTTTTTTCTGTATGTTGTCGGCTTCTGGTTCGCC : 31181 27 : AsnAsnTyrAlaGluLysArgArgArgAsnValAlaMetPheValThrIlePhePheAla : 46 !||| ! !|||:!! !! !||||||!.!|||!!:.!. !|||||| !! !.! AlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeuTyrThrIleValThrVal 31182 : GCTAATCGTATAGAGGAATGGTTCAGAAACGCTGCGATTCTGTATACCATTGTCACGGTC : 31241 47 : PheMetGlyIleSerIleGluGlyArgAspLeuTyrPheAlaTrpGlyAspPheGlu > : 66 |||.!.! !!!:!!!:!!:!! !|||! |||||||||:!!||||||:!!|||||| PhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSerTrpGlyAsnPheGlu++ 31242 : TTCTTTGTCATGTGGCTTCAGCTGAGAGGGCTTTATTTCTCCTGGGGAAACTTTGAAgt. : 31303 67 : >>> Target Intron 1 >>>> AspSerIlePheAlaGlyCysAsnValIleThrI : 77 670 bp ! !!!!!!:!:! !!.!|||||| !|||.!!: ++ValCysMetTyrMetAlaCysAsnSerIleAlaL 31304 : ........................agGTTTGCATGTACATGGCATGCAACAGTATAGCCC : 32004 78 : leValLeuValLeuLeuLysIlePheValLeuTyrIleAsnAsnGluGluLeuLeuAsnV : 97 !:||||||! !:!!:!!||||||||||||||| !:!!...!!.:!!:!!!!!|||..!: euValLeuAspIleIleLysIlePheValLeuValValArgLysLysLysPheLeuGlyL 32005 : TGGTTTTGGATATAATCAAGATTTTCGTCCTAGTCGTACGGAAGAAAAAGTTTCTCGGTC : 32064 98 : alValAsnTyrAlaLysThrAsnPheTrpArgGluSerAsnTyrGluProHisGluLysL : 117 !!:!!.!.||| ::: ||||||::: ... ||||||!!:! ! !!|||!!.. euIleGluTyrMetGlnLysAsnPhePhe---HisLeuAsnTyrAspGlnAspGluAsnS 32065 : TGATTGAGTACATgcagaagaatttcttt---catttgaaCTACGATCAGGACGAGAATT : 32121 118 : ysIleIleAspAspTyrArgArgLeuCysSerPheLeuValCysSerPheThrPhePheA : 137 ..||||||! !! !:!||| !|||! !!:!!!!|||||| !|||:!!|||! !: erIleIleAlaHisAlaLysArgThrCysIleTyrPheValCysValPheSerPheCysS 32122 : CTATTATCGCACACGCGAAACGAACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTT : 32181 138 : laGlnGlyThrValValCysPheValIleThrProValPhe{V} >>>> Target In : 151 !!|||..!|||||| !!! !!:!:!!|||! !||| !! ! { } 170 erGlnSerThrValPheSerTyrIleIleArgProPheVal{S}++ 32182 : CTCAATCTACAGTTTTTTCCTATATAATAAGGCCATTTGTA{T}gt.............. : 32226 152 : tron 2 >>>> {al}AsnAsnGlyLysAsnGluSerAspArgIleHisProPheAsnM : 166 bp { !}||| !||||||||||||||||||||| !||| !!:!:!!| ++{er}AsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspM 32227 : ...........ag{ca}AATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATA : 32438 167 : etTrpPheAspArgSerLeuSerLeuSerProTyrTyrGluIleIleTyrThrIleGlnV : 186 |||||.!!|||! ! !!||||||:!!!!!||||||||||||||| |||! !||||||| etTrpLeuAspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnV 32439 : TGTGGCTCGATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGG : 32498 187 : alLeuSerAlaTyr : 190 ||||| !! !!:! alLeuProIlePhe 32499 : TATTACCAATTTTC : 32512 vulgar: AmOr88 6 190 . KQ414828.1 31123 32512 + 372 M 59 177 5 0 2 I 0 666 3 0 2 M 41 123 G 1 0 M 43 129 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31124 32512 372 + . gene_id 6 ; sequence AmOr88 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 31124 31300 . + . KQ414828.1 exonerate:protein2genome:local exon 31124 31300 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 31301 31302 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 31301 31970 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 31969 31970 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 31971 32223 . + . KQ414828.1 exonerate:protein2genome:local exon 31971 32223 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 32224 32225 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32224 32393 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 32392 32393 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 32394 32512 . + . KQ414828.1 exonerate:protein2genome:local exon 32394 32512 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31124 32512 372 + . alignment_id 6 ; Query AmOr88 ; Align 31124 7 177 ; Align 31971 66 123 ; Align 32094 108 129 ; Align 32396 152 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 267 Query range: 296 -> 391 Target range: 12472 -> 12757 297 : AspThrSerArgAlaLysArgValIlePheThrPheHisLeuMetGlyCysMetCysGln : 316 :!!||||||! !|||!:!||| !||||||! !|||! !:!! |||..!||| ! ! AsnThrSerLeuAlaArgArgSerIlePheMetPheLeuIleCysGlyAlaMetValLeu 12473 : AATACTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTTTTA : 12530 317 : LeuLeuMetPheThrTyrSerCysAspCysLeuMetHisAspSerMetSerValAlaAsn : 336 |||!!!||||||||||||||||||:!! :!!!!:.!..!.||| !:!:!!||| ! LeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAlaPhe 12531 : TTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCTTTT : 12590 337 : AlaAlaTyrAsnSerLeuTrpProCysLeuProMetAspLysTyrGlyLysSerLeuArg : 356 |||||||||::::!!|||||| !! !!:!!||||||:!!||| !||||||!.!|||||| AlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeuArg 12591 : GCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTACGG : 12650 357 : LysAspLeuThrPheValIleMetArgSerArgSerProCysCysLeuThrAlaCysGly : 376 ! ||||||! !.!.|||||| !||||||||| !! !||||||||||||||| !||| HisAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsnGly 12651 : CATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATGGA : 12710 377 : PhePheProValSerLeuGluThrTyrThrGlyIleLeuSerVal : 391 |||||||||||||||||||||||||||||| !:!: !|||:!! PhePheProValSerLeuGluThrTyrThrThrValSerSerLeu 12711 : TTTTTCCCTGTGTCCTTAGAAACTTATACTACGGTGAGTTCACTA : 12757 vulgar: AmOr88 296 391 . KQ414828.1 12472 12757 + 267 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 12473 12757 267 + . gene_id 7 ; sequence AmOr88 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 12473 12757 . + . KQ414828.1 exonerate:protein2genome:local exon 12473 12757 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 12473 12757 267 + . alignment_id 7 ; Query AmOr88 ; Align 12473 297 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 236 Query range: 302 -> 388 Target range: 28526 -> 28784 303 : ArgValIlePheThrPheHisLeuMetGlyCysMetCysGlnLeuLeuMetPheThrTyr : 322 |||||| !!!..!!! ! !! !||| ! !!:!! !!||||||! !|||||||||||| ArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuTrpMetPheThrTyr 28527 : CGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTATGGATGTTCACGTAC : 28584 323 : SerCysAspCysLeuMetHisAspSerMetSerValAlaAsnAlaAlaTyrAsnSerLeu : 342 ||||||||||||:!!! !!:|||:!!!:!:!!|||.!.:!!!.!||| !.!!! ! SerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyPro 28585 : AGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCA : 28644 343 : TrpProCysLeuProMetAspLysTyrGlyLysSerLeuArgLysAspLeuThrPheVal : 362 ||| ! !|||||||||||||||:::|||||| ||||||||||||||| ! ! :!! TrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeu 28645 : TGGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTC : 28704 363 : IleMetArgSerArgSerProCysCysLeuThrAlaCysGlyPhePheProValSerLeu : 382 |||:!!|||:!!||| !!|||! !! !||||||||||||||||||||| !!:!!|||||| IleLeuArgAlaArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeu 28705 : ATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTC : 28764 383 : GluThrTyrThrGlyIle : 388 ||||||!:!||| !:!! GluThrPheThrLysVal 28765 : GAAACCTTTACTAAGGTA : 28784 vulgar: AmOr88 302 388 . KQ414828.1 28526 28784 + 236 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28527 28784 236 + . gene_id 8 ; sequence AmOr88 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28527 28784 . + . KQ414828.1 exonerate:protein2genome:local exon 28527 28784 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28527 28784 236 + . alignment_id 8 ; Query AmOr88 ; Align 28527 303 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 236 Query range: 307 -> 388 Target range: 38517 -> 38760 308 : PheHisLeuMetGlyCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeu : 327 ||| !||| ! !!:!! !!||||||! !||||||||||||||||||||||||:!! PheAlaThrMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIle 38518 : TTCGCAACGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATA : 38575 328 : MetHisAspSerMetSerValAlaAsnAlaAlaTyrAsnSerLeuTrpProCysLeuPro : 347 ! !!:|||:!!!:!:!!|||.!.:!!!.!||| !.!!! !||| ! !|||||| ThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuPro 38576 : ACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCA : 38635 348 : MetAspLysTyrGlyLysSerLeuArgLysAspLeuThrPheValIleMetArgSerArg : 367 |||||||||:::|||||| ||||||||||||||| ! ! :!!|||:!!|||:!!||| MetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArg 38636 : ATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGA : 38695 368 : SerProCysCysLeuThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrGly : 387 !!|||! !! !||||||||||||||||||||| !!:!!||||||||||||!:!||| ! ArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys 38696 : CGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAG : 38755 388 : Ile : 388 :!! Val 38756 : GTA : 38760 vulgar: AmOr88 307 388 . KQ414828.1 38517 38760 + 236 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38518 38760 236 + . gene_id 9 ; sequence AmOr88 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38518 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38518 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38518 38760 236 + . alignment_id 9 ; Query AmOr88 ; Align 38518 308 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 232 Query range: 185 -> 299 Target range: 10831 -> 11176 186 : ValLeuSerAlaTyrGluIleGlyIleCysTyrHisCysPheAspAsnLeuLeuPheVal : 205 :!!! !.!! !||| ! !|||||||||||| !||||||||||||:!!!!!! !:!! IleSerGlyLeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIle 10832 : ATTTCAGGACTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATC : 10889 206 : IleAsnLeuTyrThrAlaGlyGlnPheArgIleLeuArgTyrArgPheGluAsnIleCys : 225 !!:!:!:!!:!! !::!||||||||||||||||||!:!||||||!!. !!!.:!:! ! MetSerValHisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSer 10890 : ATGAGCGTGCATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCC : 10949 226 : GlyLysAsnAspAspLysAsnTyrTyrLysValSerLysSerSerLysTyrCysIle<-> : 245 ! ! !.!. !!.!.! !!:: ...:::...... !! !:!! !!|||! ! AspValGlnTyrGlnIleSerGluLysAsnMetGluSerValLeuGluAspCysThrArg 10950 : GACGTACAATATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGT : 11009 246 : AsnGluTyrLysSerPheLysThrCysValGlnGlnHisGlnAlaLeuIleGluTyrCys : 264 !.....|||:!!!.!||||||!:!! !|||!:!|||||||||.!!||||||!!:|||! ! ArgSerTyrGluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyr 11010 : AGATCTTACGAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTAC : 11069 265 : LysLysLeuGluAspValPheSerIleIleValLeuAlaGlnValLeuLeuPheSerLeu : 284 :!!||||||||| !!|||!:!!!!! !|||:!!|||!.!||||||||||||||||||:!! GluLysLeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerVal 11070 : GAGAAGCTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTG : 11129 285 : LeuIleCysLeuAspGlyTyrLeuValLeuMetGluAspThrSer : 299 |||||||||||| !||||||! !:!!|||:!!! ..!! !||| LeuIleCysLeuPheGlyTyrGlnIleLeuLeuValSerIleSer 11130 : TTAATTTGCCTCTTTGGTTATCAGATATTATTGGTTAGTATTTCA : 11176 vulgar: AmOr88 185 299 . KQ414828.1 10831 11176 + 232 M 59 177 G 0 3 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10832 11176 232 + . gene_id 10 ; sequence AmOr88 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 10832 11176 . + . KQ414828.1 exonerate:protein2genome:local exon 10832 11176 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10832 11176 232 + . alignment_id 10 ; Query AmOr88 ; Align 10832 186 177 ; Align 11012 245 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 148 -> 190 Target range: 27339 -> 27465 149 : ValPheValAsnAsnGlyLysAsnGluSerAspArgIleHisProPheAsnMetTrpPhe : 168 :::......||| !||||||||||||||||||||| !||| !|||:!!||||||||| IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPhe 27340 : attttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTC : 27397 169 : AspArgSerLeuSerLeuSerProTyrTyrGluIleIleTyrThrIleGlnValLeuSer : 188 |||! ! !!||||||:!!!!!||||||||||||||| |||! !|||||||||||| !! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 27398 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 27457 189 : AlaTyr : 190 !!:! IlePhe 27458 : ATTTTC : 27465 vulgar: AmOr88 148 190 . KQ414828.1 27339 27465 + 140 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27340 27465 140 + . gene_id 11 ; sequence AmOr88 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27340 27465 . + . KQ414828.1 exonerate:protein2genome:local exon 27340 27465 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27340 27465 140 + . alignment_id 11 ; Query AmOr88 ; Align 27340 149 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 6 -> 67 Target range: 26078 -> 26261 7 : ArgAsnLeuSerIleThrValThrAlaPheTyrMetLysValAlaGlyPheTrpValAla : 26 !:!:!!:!!|||:!!! !:!!.!! !|||!:!:!! ! |||!.!||||||||| !!||| GlnAspValSerValArgLeuAlaAsnPhePheLeuTyrValValGlyPheTrpPheAla 26079 : CAAGACGTTTCCGTTAGATTAGCCAACTTTTTTCTGTATGTCGTCGGCTTCTGGTTCGCC : 26136 27 : AsnAsnTyrAlaGluLysArgArgArgAsnValAlaMetPheValThrIlePhePheAla : 46 !||| ! !|||:!! !! !||||||!.!|||!!:.!. !|||||| !! !.! AlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeuTyrThrIleValThrVal 26137 : GCTAATCGTATAGAGGAATGGTTCAGAAACGCGGCGATTCTGTATACCATTGTCACGGTC : 26196 47 : PheMetGlyIleSerIleGluGlyArgAspLeuTyrPheAlaTrpGlyAspPheGluAsp : 66 |||.!.! !!!:!!!:!!:!! ! !!! ||||||||||||||||||:!!||||||! PhePheValMetTrpLeuGlnLeuGlyGlyLeuTyrPheAlaTrpGlyAsnPheGluVal 26197 : TTCTTTGTCATGTGGCTTCAGCTGGGAGGGCTTTATTTCGCCTGGGGAAACTTTGAAGTA : 26256 67 : Ser : 67 ||| Ser 26257 : AGT : 26261 vulgar: AmOr88 6 67 . KQ414828.1 26078 26261 + 118 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26079 26261 118 + . gene_id 12 ; sequence AmOr88 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 26079 26261 . + . KQ414828.1 exonerate:protein2genome:local exon 26079 26261 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 26079 26261 118 + . alignment_id 12 ; Query AmOr88 ; Align 26079 7 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 6 -> 67 Target range: 36189 -> 36372 7 : ArgAsnLeuSerIleThrValThrAlaPheTyrMetLysValAlaGlyPheTrpValAla : 26 !:!:!!:!!||||||! !:!!.!! !|||!:!:!! ! |||!.!||||||||| !!||| GlnAspValSerIleLysLeuAlaAsnPhePheLeuTyrValValGlyPheTrpPheAla 36190 : CAAGACGTTTCCATTAAATTAGCCAACTTTTTTCTGTATGTCGTCGGCTTCTGGTTCGCC : 36247 27 : AsnAsnTyrAlaGluLysArgArgArgAsnValAlaMetPheValThrIlePhePheAla : 46 !||| ! !|||:!! !! !||||||!.!|||!!:.!. !|||||| !! !.! AlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeuTyrThrIleValThrVal 36248 : GCTAATCGTATAGAGGAATGGTTCAGAAACGCGGCGATTCTGTATACCATTGTCACGGTC : 36307 47 : PheMetGlyIleSerIleGluGlyArgAspLeuTyrPheAlaTrpGlyAspPheGluAsp : 66 |||.!.! !!!:!!!:!!:!! !|||! ||||||!:!|||||||||:!!.!!|||! PhePheValMetTrpLeuGlnLeuArgGlyLeuTyrTyrAlaTrpGlyAsnLeuGluVal 36308 : TTCTTTGTCATGTGGCTTCAGCTGAGAGGGCTTTATTACGCCTGGGGAAACCTTGAAGTA : 36367 67 : Ser : 67 ||| Ser 36368 : AGT : 36372 vulgar: AmOr88 6 67 . KQ414828.1 36189 36372 + 117 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 36190 36372 117 + . gene_id 13 ; sequence AmOr88 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 36190 36372 . + . KQ414828.1 exonerate:protein2genome:local exon 36190 36372 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 36190 36372 117 + . alignment_id 13 ; Query AmOr88 ; Align 36190 7 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1072 Query range: 8 -> 408 Target range: 727 -> 6474 9 : AspLeuSerIleThrValMetThrPheTyrMetLysIleValGlyPheTrpIleAlaSerAs : 29 |||:!!:!!:!:||||||! !.!!||||||:!!||||||:!!|||||||||:!!|||..!!. AspIleAlaValThrValThrAlaPheTyrLeuLysIleIleGlyPheTrpLeuAlaAspTh 728 : GACATAGCGGTGACCGTTACGGCTTTCTACTTGAAAATTATCGGCTTCTGGTTAGCTGACAC : 788 30 : nTyrValGluGluArgArgArgAsnLeuThrIleSerTyrThrPhePheAlaIlePhePheA : 50 !|||! !|||:!:|||||||||......... !:!!:!|||.!.||| !:!: ! ! !| rTyrGluGluLysArgArgArgLysPheAlaGlnAsnPheThrIlePheMetLeuValCysA 789 : TTACGAGGAGAAacgtcgaagaaaattcgcgcAGAATTTCACGATATTTATGCTGGTGTGCG : 851 51 : laMetAlaThrGluAlaArgAspLeuTyrPheSerTrpGlyAsnPheGly >>>> Targe : 67 ||:!!!.!! !|||.!!||||||:!!|||!:!!!!||||||:!!|||.!! 1 laValValIleGluThrArgAspIleTyrTyrThrTrpGlyAspPheSer++ 852 : CTGTGGTAATTGAGACGAGGGATATCTATTACACCTGGGGTGATTTCAGCgt.......... : 904 68 : t Intron 1 >>>> AspSerIleLeuIleIleCysAsnLeuValThrValIleLeuVal : 81 408 bp ! !:!!! !|||!!:||||||:!!:!!|||:!! !:!! ! ++IleValValTyrIleMetCysAsnIleLeuThrLeuGlyIleSer 905 : ...............agATCGTTGTATACATAATGTGCAACATTCTAACACTGGGCATAAGT : 2352 82 : LeuPheLysIleSerIleSerLeuMetTyrArgAsnLysLeuHisLysIleIleGlnTyrAl : 102 ||||||||||||! !:!!|||:!! ! !!:!!!.|||||| ::::::|||::::::|| LeuPheLysIlePheLeuSerMetTrpSerLysLysLysLeuLeuGluLeuIleLysPheAl 2353 : TTGTTCAAGATCTTTCTCTCGATGTGGAGTAAGAAAAAACttttggaattaattaaattcgc : 2415 103 : aLysThrAsnPheTrpAsnLeuLysTyrAspLeuHisAspGluGlnIleIleIleAsnThrC : 123 |!:!||||||||||||:!!! ! ! |||||| .!.||||||||||||:!:||| !| aArgThrAsnPheTrpHisSerAspTyrAsp---SerGlnGluGlnIleIleValAsnGluC 2416 : cAGAACGAATTTCTGGCATTCGGATTATGAC---TCGCAGGAGCAAATTATTGTGAACGAGT : 2475 124 : ysLysArgTyrSerThrPhePheValCysIlePheThrPhePheSerGlnGlyThrValPhe : 143 |||||||| !!!!||||||.!!:!!|||:!:|||!.!||||||:!!.!.|||||||||! ! ysLysArgThrCysThrPheLeuIleCysValPheAsnPhePheAlaAsnGlyThrValSer 2476 : GTAAACGCACTTGTACATTCCTTATATGCGTGTTTAATTTCTTCGCTAATGGGACAGTGTCT : 2535 144 : SerPheValIleArgSerLeuLys{G} >>>> Target Intron 2 >>>> {lu}As : 153 .!!!:!:!!|||||| !!:!! !{!} 318 bp { !}!: GlyTyrIleIleArgProIleVal{A}++ ++{la}Se 2536 : GGATACATAATCAGGCCAATTGTA{G}gt.........................ag{CA}Ag : 2883 154 : nIleGlyLysAsnGluThrGluArgIleHisProPheAsnLeuTrpLeuAspGluSerTrpT : 174 :|||||||||||||||:::!!:|||:!!! ! ! !!|||!!!|||:!!||| ! !! rIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuProIleT 2884 : tattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCCGATAA : 2946 175 : yrMetThrProTyrPheGluMetValPheIleIleGlu >>>> Target Intron 3 > : 187 !!!:|||||||||:::|||::::::||| |||:!! 406 bp hrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2947 : CCATCACACCATactatgaaatattatttacgaTACAGgt...................... : 2987 188 : >>> IleLeuSerLeuTyrHisValGlyValCysTyrLeuTyrPheAspAsnPheMetCys : 205 |||!!!! !:!! :!!||| !!:!! !!||||||! !.!!|||||||||:!!||| ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheLeuCys 2988 : ...agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTCTGTGC : 3445 206 : IleIleAsnLeuHisIleAlaGlyGlnPheArgIleLeuGlnHisArgPheSerAsnValCy : 226 !!:||||||||||||! !||| !||||||||||||||||||:!!|||.!.||||||||||| MetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnValCy 3446 : ATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAATGTGTG : 3508 227 : sAsnGluMetCysGluLysCysCysTyrGlnLeuSerArgLysSerProTyrLeuSerIleC : 247 |..! ....!.:!! !! ::::::|||:::|||:::|||! ! !||| ! sGly------AlaAsnGluArgSerAspLysIleSerLysLysThrProSerAsnSerAspG 3509 : CGGT------GCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTCGGACG : 3565 248 : ysLysTyrAlaLysLeuLysIleTyrIleArgGlnHisGlnThrLeuIleGluTyrCysArg : 267 |||||||||!!!|||! !! !|||!:!|||||||||.!!|||||||||||||||!.! luCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsn 3566 : AATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAAC : 3625 268 : LysLeuGluMetValSerAsnPheIleIlePheGlyGlnValLeuLeuPheSerLeuLeuIl : 288 ||||||:!! !|||! !..!.!..!!:!:.!!!.!||||||||||||||||||||||||!! LysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeuLeuMe 3626 : AAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAAT : 3688 289 : eCysLeuAspGlyTyrLeuIleLeuMet >>>> Target Intron 4 >>>> GluAs : 299 :||||||||||||||||||:!: ||| 457 bp ||||| tCysLeuAspGlyTyrLeuVal---Met++ ++GluAs 3689 : GTGCCTCGATGGATATTTGGTG---ATGgt.........................agGAAGA : 4175 300 : pThrSerAsnMetSerArgLeuIlePheThrPheHisLeuIleSerCysMetCysGlnLeuL : 320 |||| !!! !|||..!||||||! !||| !|||||||||! .!!|||:!!|||||||||| pThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuL 4176 : TACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGT : 4238 321 : euMetPheThrTyrSerCysAspCysLeuIleArgAspSerThrAsnIleAlaAsnAlaThr : 340 |||||||||||||||||||||||||||||||||||!!:||| !|||:!:|||||||||! ! euMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIle 4239 : TGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATA : 4298 341 : TyrAsnSerLeuTrpSerPheMetProMetAspLysTyrGlyLysMetLeuArgLysAspLe : 361 |||:!!!!!! !|||! ! !:!!|||||||||!:!! !|||::!||||||||||||||||| TyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAspLe 4299 : TACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTT : 4361 362 : uIleLeuValIleMetArgSerLysSerProCysTyrLeuThrAlaLeuGlyPhePheProV : 382 |! !!!!|||||| ||||||!:! !||||||! !|||||||||! !||||||||||||| uThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePheProV 4362 : GACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTG : 4424 383 : alSerLeuGluThrTyrIleSer >>>> Target Intron 5 >>>> IleLeuSerT : 393 |||||||||||||||||! !||| 1970 bp :!!:!!|||| alSerLeuGluThrTyrThrSer++ ++ValIleSerT 4425 : TGTCACTGGAAACGTACACTTCGgt.........................agGTTATAAGTA : 6427 394 : hrAlaIleSerTyrPheThrLeuLeuArgAsnArgAlaGluGlnThr : 408 |||||:!:|||||||||||||||||||||.!.||| !|||.!.!:! hrAlaValSerTyrPheThrLeuLeuArgGlnArgIleGluAspSer 6428 : CAGCAGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAGGACAGC : 6474 vulgar: AmOr85 8 408 . KQ414828.1 727 6474 + 1072 M 58 174 5 0 2 I 0 1404 3 0 2 M 46 138 G 1 0 M 38 114 S 0 1 5 0 2 I 0 314 3 0 2 S 1 2 M 34 102 5 0 2 I 0 402 3 0 2 M 41 123 G 2 0 M 66 198 G 1 0 M 1 3 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 728 6474 1072 + . gene_id 1 ; sequence AmOr85 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 728 901 . + . KQ414828.1 exonerate:protein2genome:local exon 728 901 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 902 903 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 902 2309 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 2308 2309 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 2310 2562 . + . KQ414828.1 exonerate:protein2genome:local exon 2310 2562 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 2563 2564 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 2563 2880 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 2879 2880 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 2881 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2881 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 3 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 0 ; deletions 3 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6474 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6474 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 728 6474 1072 + . alignment_id 1 ; Query AmOr85 ; Align 728 9 174 ; Align 2310 67 138 ; Align 2448 114 114 ; Align 2883 153 102 ; Align 3391 187 123 ; Align 3514 230 198 ; Align 3712 297 3 ; Align 4172 298 276 ; Align 6418 390 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1004 Query range: 8 -> 406 Target range: 15121 -> 19906 9 : AspLeuSerIleThrValMetThrPheTyrMetLysIleValGlyPheTrpIleAlaSer : 28 |||:!!||||||!:!:!!! !:!! !!!:!|||||||||||||||.!.|||!!:|||||| AspIleSerIleSerLeuThrSerValPheMetLysIleValGlyLeuTrpMetAlaSer 15122 : GACATATCAATCAGCCTGACGTCCGTTTTCATGAAGATCGTTGGACTGTGGATGGCGTCG : 15179 29 : AsnTyrValGluGluArgArgArgAsnLeuThrIleSerTyrThrPhePheAlaIlePhe : 48 ||| ! !!|||:!!||| !||||||:!!|||:!:!!!||||||.!..!!||||||.!! AsnArgPheGluGlnArgValArgAsnIleThrLeuCysTyrThrLeuIleAlaIleLeu 15180 : AACCGTTTCGAGCAACGAGTACGAAATATCACGCTGTGTTACACGCTGATCGCGATTCTC : 15239 49 : PheAlaMetAlaThrGluAlaArgAspLeuTyrPheSerTrpGlyAsnPheGly >>>> : 67 ||||||:!! !! !:!! !! !|||||||||!:!|||||||||:!!|||||| PheAlaLeuTrpIleGlnMetThrAspLeuTyrTyrSerTrpGlyAspPheGly++ 15240 : TTCGCCCTGTGGATACAAATGACGGATTTGTATTACTCGTGGGGAGATTTTGGTgt.... : 15298 68 : Target Intron 1 >>>> AspSerIleLeuIleIleCysAsnLeuValThrValI : 79 891 bp ! !!!!:!!! !! ! !||||||:!!:!!:!!:!!! ++AlaCysLeuTyrThrAlaCysAsnIleLeuSerLeuT 15299 : .....................agGCCTGTTTATATACTGCATGCAACATTTTATCGTTAA : 16223 80 : leLeuValLeuPheLysIleSerIleSerLeuMetTyrArgAsnLysLeuHisLysIleI : 99 !:!! !!!!.!!|||||| !:!!! !||| ::::::||| ... :::| hrIleProPheLeuLysIleLeuValLeuLeuAlaHisLysAsnAspPhePheHisLeuI 16224 : CAATACCGTTTCTCAAGATACTCGTCTTGCTTGCAcacaaaaatgatttttttcatttga : 16283 100 : leGlnTyrAlaLysThrAsnPheTrpAsnLeuLysTyrAspLeuHisAspGluGlnIleI : 119 || !:!! !:!! !.!.|||! !:!! ! ! |||||| !:!!!!::!!:!!|||: leLeuHisLeuGlnArgGluPheLeuHisAlaAspTyrAspAspTyrGluLysLysIleL 16284 : ttcTGCACCTACAACGAGAATTCTTGCATGCAGATTACGACGACTACGAGAAAAAGATTT : 16343 120 : leIleAsnThrCysLysArgTyrSerThrPhePheValCysIlePheThrPhePheSerG : 139 !::!!..! |||:!!||| ! !!!|||||||||||||||.!!||||||.!!|||!!!: euLeuGly---CysGlnArgGlnCysThrPhePheValCysPhePheThrLeuPheThrL 16344 : TGCTCGGT---TGCCAACGTCAATGTACCTTCTTCGTTTGTTTCTTCACACTTTTCACTA : 16400 140 : lnGlyThrValPheSerPheValIleArgSerLeuLys{G} >>>> Target Intro : 152 !!|||||||||.!!|||!:!:!!:!!!.! !!|||! {!} 1386 bp ysGlyThrValIleSerTyrIleValAsnProLeuIle{A}++ 16401 : AAGGAACTGTTATCTCGTACATCGTTAATCCGCTTATT{G}gt................. : 16442 153 : n 2 >>>> {lu}AsnIleGlyLysAsnGluThrGluArgIleHisProPheAsnLeuT : 168 { !}||||||||||||||||||:!!|||||||||! !|||||||||:!!| ++{la}AsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetT 16443 : ........ag{ca}aatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGT : 17873 169 : rpLeuAspGluSerTrpTyrMetThrProTyrPheGluMetValPheIleIleGlu >> : 187 ||:!!:!! ! !!! ! ||||||||||||!:!|||:::...||| ::::!! rpValAsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln++ 17874 : GGGTCAACTTGCCATTATCAATGACGCCATATTACgaaataactttttcattaCAGgt.. : 17932 188 : >> Target Intron 3 >>>> IleLeuSerLeuTyrHisValGlyValCysTyrLe : 198 110 bp ::!|||||||||||||||:!!|||||| !!|||!! ++ValLeuSerLeuTyrHisIleGlyValSerTyrPh 17933 : .......................aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTT : 18073 199 : uTyrPheAspAsnPheMetCysIleIleAsnLeuHisIleAlaGlyGlnPheArgIleLe : 218 !! ||||||||||||:::||||||!!:||||||||| ||| !|||||||||:!!|| eCysPheAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLe 18074 : CTgcttcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATT : 18133 219 : uGlnHisArgPheSerAsnValCys<-><-><->AsnGluMetCysGluLysCysCysTy : 235 ||||:!!|||.!.:!!|||:!! ! :::::: :::::: uGlnTyrArgMetAlaAsnMetThrAspLeuLysAspLysGluArgLysGluArgAsnMe 18134 : GCAATACCGAATGGCGAATATGACCGATTTAAAGGacaaagagaggaaagagagaaatat : 18193 236 : rGlnLeuSerArgLysSerProTyrLeuSerIleCysLysTyrAlaLysLeuLysIleTy : 255 :!! !||| !!..||| !!! !!!!:!!! ! ||| ! |||||| !|| tLysThrSerValSerSerAlaCysPheAlaThrGluCysTyrAsnValLeuLysAspTy 18194 : gaAGACAAGTGTGAGTTCGGCGTGCTTTGCAACAGAATGTTACAACGTTCTCAAAGATTA : 18253 256 : rIleArgGlnHisGlnThrLeuIleGluTyrCysArgLysLeuGluMetValSerAsnPh : 275 ||||||||||||||||!.!||||||! ||||||!.!|||||||||! |||! !|||.! rIleArgGlnHisGlnAsnLeuIleAlaTyrCysAsnLysLeuGluLysValPheAsnIl 18254 : TATCAGACAGCATCAGAACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGTTCAATAT : 18313 276 : eIleIlePheGlyGlnValLeuLeuPheSerLeuLeuIleCysLeuAspGlyTyrLeuIl : 295 !|||:!!.!.||||||:!!|||:!!||||||:!!||||||||||||||||||!:!! !|| eIleValLeuGlyGlnLeuLeuMetPheSerMetLeuIleCysLeuAspGlyPheGlnIl 18314 : CATTGTTCTGGGGCAATTGTTAATGTTCAGCATGTTGATCTGTCTCGATGGATTTCAGAT : 18373 296 : eLeuMet >>>> Target Intron 4 >>>> GluAspThrSerAsnMetSerArg : 305 ||||||| 975 bp ! !:!!||| !!!.!! !!!||| eLeuMet++ ++AlaAsnThrProThrArgThrArg 18374 : ACTTATGgt.........................agGCAAATACACCTACCAGAACCCGA : 19378 306 : LeuIlePheThrPheHisLeuIleSerCysMetCysGlnLeuLeuMetPheThrTyrSer : 325 |||||||||! !||||||:!! !:!!||||||||||||||||||||||||||||||||| LeuIlePheIlePheHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSer 19379 : CTGATTTTCATCTTTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGC : 19438 326 : CysAspCysLeuIleArgAspSerThrAsnIleAlaAsnAlaThrTyrAsnSerLeuTrp : 345 |||||||||:!!||||||!!:||||||!:!! !|||.!.|||..!|||!:!.!!! !||| CysAspCysIleIleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyProTrp 19439 : TGCGACTGCATCATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGG : 19498 346 : SerPheMetProMetAspLysTyrGlyLysMetLeuArgLysAspLeuIleLeuValIle : 365 !!!.!!:!:||||||..! ! !!|||||||||:!!||||||||||||!!:||||||||| ThrLeuLeuProMetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuValIle 19499 : ACACTTTTACCAATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATC : 19558 366 : MetArgSerLysSerProCysTyrLeuThrAlaLeuGlyPhePheProValSerLeuGlu : 385 |||||||||!.. !||||||! !||||||||| !||||||||| !|||||||||||| MetArgSerSerValProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGlu 19559 : ATGAGATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAA : 19618 386 : ThrTyrIleSer >>>> Target Intron 5 >>>> IleLeuSerThrAlaIleS : 396 ||||||! !.!! 223 bp :!!|||||||||||| !| ThrTyrThrGly++ ++ValLeuSerThrAlaAlaS 19619 : ACGTACACAGGGgt.........................agGTTTTAAGCACCGCAGCCT : 19874 397 : erTyrPheThrLeuLeuArgAsnArgAlaGlu : 406 |||||||||||||||||!:!.!.|||:!!||| erTyrPheThrLeuLeuLysGlnArgSerGlu 19875 : CATACTTTACGTTGCTGAAGCAAAGATCAGAG : 19906 vulgar: AmOr85 8 406 . KQ414828.1 15121 19906 + 1004 M 58 174 5 0 2 I 0 887 3 0 2 M 55 165 G 1 0 M 29 87 S 0 1 5 0 2 I 0 1382 3 0 2 S 1 2 M 34 102 5 0 2 I 0 106 3 0 2 M 40 120 G 0 9 M 71 213 5 0 2 I 0 971 3 0 2 M 92 276 5 0 2 I 0 219 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15122 19906 1004 + . gene_id 2 ; sequence AmOr85 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 15122 15295 . + . KQ414828.1 exonerate:protein2genome:local exon 15122 15295 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 15296 15297 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 15296 16186 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 16185 16186 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 16187 16439 . + . KQ414828.1 exonerate:protein2genome:local exon 16187 16439 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 16440 16441 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 16440 17825 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 17824 17825 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 17826 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17826 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 2 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18381 . + . insertions 9 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19906 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19906 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15122 19906 1004 + . alignment_id 2 ; Query AmOr85 ; Align 15122 9 174 ; Align 16187 67 165 ; Align 16352 123 87 ; Align 17828 153 102 ; Align 18040 187 120 ; Align 18169 227 213 ; Align 19357 298 276 ; Align 19856 390 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 880 Query range: 2 -> 409 Target range: 31108 -> 34319 3 : SerAsnLysValGlyGlyAspLeuSerIleThrValMetThrPheTyrMetLysIleVal : 22 ||| ||| ! !! !|||:!!|||.!!! !:!! !.!|||!:!:!! ! :!!||| SerLeuLysTyrArgGlnAspValSerPheArgLeuAlaAsnPhePheLeuTyrValVal 31109 : AGCTTGAAATATCGTCAAGACGTTTCCTTTAGATTAGCCAACTTTTTTCTGTATGTTGTC : 31166 23 : GlyPheTrpIleAlaSerAsnTyrValGluGluArgArgArgAsnLeuThrIleSerTyr : 42 |||||||||.!!|||:!!||| !:!!|||||| !! !|||||| !.!!||| !||| GlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeuTyr 31167 : GGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCTGCGATTCTGTAT : 31226 43 : ThrPhePheAlaIlePhePheAlaMetAlaThrGluAlaArgAspLeuTyrPheSerTrp : 62 |||.!! !!.!!:!!||||||!.!||| ! !:!! !|||! ||||||||||||||| ThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSerTrp 31227 : ACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGGCTTTATTTCTCCTGG : 31286 63 : GlyAsnPheGly >>>> Target Intron 1 >>>> AspSerIleLeuIleIleC : 73 |||||||||! ! 670 bp ! !!!!!!:! !!!: !| GlyAsnPheGlu++ ++ValCysMetTyrMetAlaC 31287 : GGAAACTTTGAAgt.........................agGTTTGCATGTACATGGCAT : 31989 74 : ysAsnLeuValThrValIleLeuValLeuPheLysIleSerIleSerLeuMetTyrArgA : 93 ||||| !:!!.!!:!!:!!|||! !:!!.!!||||||! !:!! !:!!:!: !:!! ysAsnSerIleAlaLeuValLeuAspIleIleLysIlePheValLeuValValArgLysL 31990 : GCAACAGTATAGCCCTGGTTTTGGATATAATCAAGATTTTCGTCCTAGTCGTACGGAAGA : 32049 94 : snLysLeuHisLysIleIleGlnTyrAlaLysThrAsnPheTrpAsnLeuLysTyrAspL : 113 !.|||!!!! ! :!:|||:!!||| ::: ||||||::::::|||...|||||| ysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPhePheHisLeuAsnTyrAsp- 32050 : AAAAGTTTCTCGGTCTGATTGAGTACATgcagaagaatttctttcatttgaaCTACGAT- : 32109 114 : euHisAspGluGlnIleIleIleAsnThrCysLysArgTyrSerThrPhePheValCysI : 133 !!.||||||.!. !|||||| !...|||||| !!!! !!:!|||||||||: --GlnAspGluAsnSerIleIleAlaHisAlaLysArgThrCysIleTyrPheValCysV 32110 : --CAGGACGAGAATTCTATTATCGCACACGCGAAACGAACGTGCATCTACTTCGTCTGCG : 32166 134 : lePheThrPhePheSerGlnGlyThrValPheSerPheValIleArgSerLeuLys{G} : 152 !!|||:!!|||! !||||||..!||||||||||||!:!:!!|||||| !!!!! !{.} alPheSerPheCysSerGlnSerThrValPheSerTyrIleIleArgProPheVal{S}+ 32167 : TCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTATATAATAAGGCCATTTGTA{T}g : 32224 153 : >>>> Target Intron 2 >>>> {lu}AsnIleGlyLysAsnGluThrGluArgI : 162 170 bp {.!}|||:!!||||||||||||:!!!!:||| + ++{er}AsnLeuGlyLysAsnGluSerAspArgG 32225 : t.........................ag{ca}AATCTTGGAAAGAATGAATCTGATAGAG : 32423 163 : leHisProPheAsnLeuTrpLeuAspGluSerTrpTyrMetThrProTyrPheGluMetV : 182 !||| !!:!:!!:!!||||||||| ! !!! ! !:!:|||||||||:::|||:::. luHisIleTyrAspMetTrpLeuAspLeuProLeuSerValThrProTyrTyrGluIleT 32424 : AACATATATACGATATGTGGCTCGATCTACCATTATCCGTAACAccatattatgaaatta : 32483 183 : alPheIleIleGlu >>>> Target Intron 3 >>>> IleLeuSerLeuTyrHi : 192 ..::!||||||:!! 307 bp !||||||:!!|||!! hrTyrIleIleGln++ ++AlaLeuSerValTyrGl 32484 : cttACATAATACAGgt.........................agGCTTTATCTGTGTACCA : 32820 193 : sValGlyValCysTyrLeuTyrPheAspAsnPheMetCysIleIleAsnLeuHisIleAl : 212 .||||||||||||||||||! !|||||||||...... |||::: !||||||:!:|| nValGlyValCysTyrLeuCysPheAspAsnIlePhePheIleMetCysLeuHisValAl 32821 : AGTTGGAGTGTGTTACCTTTGCTttgataacatttttttcattatgtgTCTACACGTGGC : 32880 213 : aGlyGlnPheArgIleLeuGlnHisArgPheSerAsnValCysAsnGluMetCysGluLy : 232 ||||||||||||||||||||||:!!|||.!!:!!||||||! ..! !! ! aGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleVa 32881 : TGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGT : 32940 233 : sCysCysTyrGlnLeuSerArgLysSerProTyrLeuSerIleCysLysTyrAlaLysLe : 252 ! !! !!.!. !!!!!!!! !:!! !! ! !||| ||| !|||!! lLysSerAsnAspAsnThrSerThrAlaGluLeuTyrSerGluLysCysTyrIleLysPh 32941 : GAAGAGCAATGATAATACAAGCACGGCTGAATTATACTCAGAGAAATGTTACATCAAGTT : 33000 253 : uLysIleTyrIleArgGlnHisGlnThrLeuIleGluTyrCysArgLysLeuGluMetVa : 272 !|||! !! !|||!:!|||||||||.!!|||||||||:::|||... |||||| !|| eLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysGluIleLeuGluGluVa 33001 : TAAGAATTGCATTCAACAACATCAGGCACTaattgaattttgtgaaatactCGAAGAGGT : 33060 273 : lSerAsnPheIleIlePheGlyGlnValLeuLeuPheSerLeuLeuIleCysLeuAspGl : 292 |! !!.. ! |||:!!.!!||||||||||||:!!||||||:!!:!!||||||!!!! !|| lPheThrValIleValLeuGlyGlnValLeuMetPheSerIleIleIleCysPheAlaGl 33061 : ATTCACGGTAATCGTACTCGGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGG : 33120 293 : yTyrLeuIleLeuMet >>>> Target Intron 4 >>>> GluAspThrSerAsn : 302 |||| !:!!|||:!! 406 bp ! ! !! ! yTyrGluValLeuLeu++ ++IleThrLeuProPhe 33121 : GTATGAAGTACTCCTGgt.........................agATAACGTTACCATTT : 33556 303 : MetSerArgLeuIlePheThrPheHisLeuIleSerCysMetCysGlnLeuLeuMetPhe : 322 ||||||:!! !||||||! ! !||||||!!! !!:!! !!||||||! !|||||| GluSerArgValAlaPheThrCysPheLeuIleThrGlyValSerGlnLeuTrpMetPhe 33557 : GAATCGCGCGTTGCTTTCACGTGCTTCTTGATTACGGGCGTGAGTCAACTATGGATGTTC : 33616 323 : ThrTyrSerCysAspCysLeuIleArgAspSerThrAsnIleAlaAsnAlaThrTyrAsn : 342 ||||||||||||:!!|||:!!! !! !!!:||| !|||||||||.!.:!!..!||| ! ThrTyrSerCysAsnCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAla 33617 : ACGTACAGTTGCAATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCT : 33676 343 : SerLeuTrpSerPheMetProMetAspLysTyrGlyLysMetLeuArgLysAspLeuIle : 362 .!!! !|||! ! !:!:||||||||||||:::||||||:::||||||||||||||| ! GlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGln 33677 : GGACCATGGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAGGATTTACAA : 33736 363 : LeuValIleMetArgSerLysSerProCysTyrLeuThrAlaLeuGlyPhePheProVal : 382 :!!:!!|||:!!|||:!!!:! !!|||! ! !|||||||||! !||||||||| !!:!! ValLeuIleLeuArgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIle 33737 : GTGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATA : 33796 383 : SerLeuGluThrTyrIleSer >>>> Target Intron 5 >>>> IleLeuSerT : 393 !!!|||||||||!:!! !!.! 440 bp |||:!!|||| ThrLeuGluThrPheThrLys++ ++IleMetSerT 33797 : ACTCTCGAAACCTTTACTAAGgt.........................agATCATGAGTA : 34269 394 : hrAlaIleSerTyrPheThrLeuLeuArgAsnArgAlaGluGlnThrIle : 409 ||:!!!!:||||||||||||||||||!:!.!.!!!||||||.!.|||:!! hrSerMetSerTyrPheThrLeuLeuLysGlnSerAlaGluAspThrVal 34270 : CATCAATGTCGTATTTCACCCTACTAAAACAAAGTGCCGAGGACACAGTA : 34319 vulgar: AmOr85 2 409 . KQ414828.1 31108 34319 + 880 M 64 192 5 0 2 I 0 666 3 0 2 M 46 138 G 1 0 M 38 114 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 34 102 5 0 2 I 0 303 3 0 2 M 111 333 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31109 34319 880 + . gene_id 3 ; sequence AmOr85 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 31109 31300 . + . KQ414828.1 exonerate:protein2genome:local exon 31109 31300 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 31301 31302 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 31301 31970 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 31969 31970 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 31971 32223 . + . KQ414828.1 exonerate:protein2genome:local exon 31971 32223 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 32224 32225 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32224 32393 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 32392 32393 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 32394 32497 . + . KQ414828.1 exonerate:protein2genome:local exon 32394 32497 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32498 32499 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32498 32804 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 32803 32804 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32805 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32805 33137 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 5 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34319 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34319 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31109 34319 880 + . alignment_id 3 ; Query AmOr85 ; Align 31109 3 192 ; Align 31971 67 138 ; Align 32109 114 114 ; Align 32396 153 102 ; Align 32805 187 333 ; Align 33544 298 276 ; Align 34260 390 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 522 Query range: 64 -> 409 Target range: 21885 -> 24199 65 : PheGlyAspSerIleLeuIleIleCysAsnLeuValThrValIleLeuValLeuPheLys : 84 ||| !!!!!!:! !!!: !|||||| !:!!.!!:!!:!!|||! !:!!.!!||| PheGlnValCysMetTyrMetAlaCysAsnSerLeuAlaLeuValLeuAspIleIleLys 21886 : tttcaggTTTGCATGTACATGGCATGCAACAGTTTAGCCCTGGTTTTGGATATAATCAAG : 21943 85 : IleSerIleSerLeuMetTyrArgAsnLysLeuHisLysIleIleGlnTyrAlaLysThr : 104 |||! !:!! !|||:!: !:!!!.|||!!!! ! :!:|||:!!||| !:!!! ! IlePheValLeuLeuValArgLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLys 21944 : ATTTTCGTCCTACTCGTACGGAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAG : 22003 105 : AsnPheTrpAsnLeuLysTyrAspLeuHisAspGluGlnIleIleIleAsnThrCysLys : 124 |||||||||:!!|||!!.|||||| !!.||||||.!. !|||||| !...||| AsnPheTrpHisLeuAsnTyrAsp---GlnAspGluAsnSerIleIleAlaHisAlaLys 22004 : AATTTTTGGCATTTGAACTACGAC---CAGGACGAGAATTCTATTATCGCACACGCGAAA : 22060 125 : ArgTyrSerThrPhePheValCysIlePheThrPhePheSerGlnGlyThrValPheSer : 144 ||| !!!! !!:!|||||||||:!!|||:!!|||! !||||||..!|||||||||||| ArgThrCysIleTyrPheValCysValPheSerPheCysSerGlnSerThrValPheSer 22061 : CGAACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCC : 22120 145 : PheVal >>>> Target Intron 1 >>>> IleArgSerLeuLysGluAsnIleG : 155 !:!:!! 170 bp ... ::: |||:!!| TyrIle-+ +-GlyAsnPheIleLeuAlaAsnLeuG 22121 : TATATAat.........................atgggaattttattttagcaAATCTTG : 22323 156 : lyLysAsnGluThrGluArgIleHisProPheAsnLeuTrpLeuAspGluSerTrpTyrM : 175 |||||||||||:!!!!:||| !||| !!:!:!!:!!||||||||| ! !!! ! !: lyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuProLeuSerV 22324 : GAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCATTATCCG : 22383 176 : etThrProTyrPheGluMetValPhe >>>> Target Intron 2 >>>> IleIl : 185 !:|||||||||:::|||:::...::! 316 bp !:! alThrProTyrTyrGluIleThrTyr-+ ++AlaLe 22384 : TAACAccatattatgaaattacttACat.........................agGCTTT : 22729 186 : eGluIleLeuSerLeuTyrHisValGlyValCysTyrLeuTyrPheAspAsnPheMetCy : 205 !...:!:! !..!:!! ! ! !:!!||| |||||| ...... uSerValTyrGlnValSerAlaCysTyrLeuCys---------PheAspIleIlePhePh 22730 : ATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGC---------tttgatatcattttttt : 22780 206 : sIleIleAsnLeuHisIleAlaGlyGlnPheArgIleLeuGlnHisArgPheSerAsnVa : 225 |||::: ||||||:!:||||||||||||||||||||||||:!!|||.!!:!!||||| eIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnVa 22781 : cattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGT : 22840 226 : lCysAsnGluMetCysGluLysCysCysTyrGlnLeuSerArgLysSerProTyrLeuSe : 245 |! ..! !! ! ! !! !:!! ! !!!!!! !..! !! ! !|| lSerGlyLeuSerGluIleValLysSerSerGluAsnProSerThrAspGluLeuTyrSe 22841 : GTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAATTATACTC : 22900 246 : rIleCysLysTyrAlaLysLeuLysIleTyrIleArgGlnHisGlnThrLeuIleGluTy : 265 | ||| !|||!!!|||! !! !|||!:!|||||||||.!!|||||||||!: rGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPh 22901 : AGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAATT : 22960 266 : rCysArgLysLeuGluMetValSerAsnPheIleIlePheGlyGlnValLeuLeuPheSe : 285 !||| !! !|||||| !|||! !!.. ! |||:!!.!!||||||||||||:!!! !|| eCysAlaThrLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMetSerSe 22961 : TTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCTAATGTCTAG : 23020 286 : rLeuLeuIleCysLeuAspGlyTyrLeuIleLeuMetGluAspThrSerAsnMet{S} : 304 |:!!|||||||||!!! !||||||! !:!!|||:!!! !..!! !..!!:! {!} rIleLeuIleCysPheIleGlyTyrGlnValLeuLeuValSerIleGluSerTyr{T}-+ 23021 : CATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGGTGAGTATCGAAAGCTAT{A}at : 23078 305 : >>>> Target Intron 3 >>>> {er}ArgLeuIlePheThrPheHisLeuIleSe : 314 492 bp {!!}|||:!! !|||.!!! ! !|||!!:! +-{hr}ArgValAlaPheAlaCysPheLeuMetMe 23079 : .........................at{CG}CGCGTTGCTTTCGCGTGCTTCTTGATGAT : 23599 315 : rCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgAspSerTh : 334 ! !!||| !!||||||! !||||||||||||||||||||||||:!!! !! !!!:||| tGlyMetSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLe 23600 : GGGCATGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCATAACAACAGAAAGCCT : 23659 335 : rAsnIleAlaAsnAlaThrTyrAsnSerLeuTrpSerPheMetProMetAspLysTyrGl : 354 !|||||||||.!.:!!..!||| !.!!! !|||! ! !:!:||||||||||||!:!|| uAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGl 23660 : GAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATGGACAAATTTGG : 23719 355 : yLysMetLeuArgLysAspLeuIleLeuValIleMetArgSerLysSerProCysTyrLe : 374 ||||:!!|||||||||!!:||| !:!!:!!|||:!!|||:!!!:! !!|||! ! !|| yLysLeuLeuArgLysGluLeuGlnMetLeuIleLeuArgAlaArgArgProSerAlaLe 23720 : AAAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGGGCGAGACGACCTTCCGCTTT : 23779 375 : uThrAlaLeuGlyPhePheProValSerLeuGluThrTyrIleSerIleLeu{Se} >> : 392 |||||||! !||||||||| !!:!!||||||||||||!:!! !!.!:!!!!!{!:} uThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysValPhe{As}-+ 23780 : GACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTATTT{AA}at.. : 23837 393 : >> Target Intron 4 >>>> {r}ThrAlaIleSerTyrPheThrLeuLeuArgAs : 403 313 bp {!}|||:!!!!:||||||||||||||||||!:!.! ++{n}ThrSerMetSerTyrPheThrLeuLeuLysGl 23838 : .......................ag{T}ACATCAATGTCGTATTTCACATTATTAAAACA : 24179 404 : nArgAlaGluGlnThrIle : 409 . !! !|||.!.|||:!! nCysIleGluAspThrVal 24180 : ATGTATCGAGGACACGGTA : 24199 vulgar: AmOr85 64 409 . KQ414828.1 21885 24199 + 522 M 48 144 G 1 0 M 33 99 5 0 2 I 0 166 3 0 2 M 37 111 5 0 2 I 0 312 3 0 2 M 13 39 G 3 0 M 104 312 S 0 1 5 0 2 I 0 488 3 0 2 S 1 2 M 87 261 S 0 2 5 0 2 I 0 309 3 0 2 S 1 1 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21886 24199 522 + . gene_id 4 ; sequence AmOr85 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 21886 22128 . + . KQ414828.1 exonerate:protein2genome:local exon 21886 22128 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 22129 22130 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 22129 22298 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22297 22298 . + . intron_id 0 ; splice_site "at" KQ414828.1 exonerate:protein2genome:local cds 22299 22409 . + . KQ414828.1 exonerate:protein2genome:local exon 22299 22409 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22410 22411 . + . intron_id 2 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 22410 22725 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 23077 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 23077 . + . insertions 0 ; deletions 3 KQ414828.1 exonerate:protein2genome:local splice5 23078 23079 . + . intron_id 3 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 23078 23569 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 23568 23569 . + . intron_id 2 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local cds 23570 23834 . + . KQ414828.1 exonerate:protein2genome:local exon 23570 23834 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23835 23836 . + . intron_id 4 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 23835 24147 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 24146 24147 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 24148 24199 . + . KQ414828.1 exonerate:protein2genome:local exon 24148 24199 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21886 24199 522 + . alignment_id 4 ; Query AmOr85 ; Align 21886 65 144 ; Align 22030 114 99 ; Align 22299 147 111 ; Align 22726 184 39 ; Align 22765 200 312 ; Align 23572 305 261 ; Align 24149 393 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 318 Query range: 298 -> 409 Target range: 12472 -> 13164 299 : AspThrSerAsnMetSerArgLeuIlePheThrPheHisLeuIleSerCysMetCysGln : 318 :!!|||||| ! !!!||| !||||||! !|||! !:!! !.!!..!||| ! ! AsnThrSerLeuAlaArgArgSerIlePheMetPheLeuIleCysGlyAlaMetValLeu 12473 : AATACTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTTTTA : 12530 319 : LeuLeuMetPheThrTyrSerCysAspCysLeuIleArgAspSerThrAsnIleAlaAsn : 338 |||!!!||||||||||||||||||:!! :!!|||..!.!.||| !||||||||| ! LeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAlaPhe 12531 : TTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCTTTT : 12590 339 : AlaThrTyrAsnSerLeuTrpSerPheMetProMetAspLysTyrGlyLysMetLeuArg : 358 |||.!!|||::::!!||||||!!! !|||||||||:!!||| !||||||! !|||||| AlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeuArg 12591 : GCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTACGG : 12650 359 : LysAspLeuIleLeuValIleMetArgSerLysSerProCysTyrLeuThrAlaLeuGly : 378 ! |||||||||:!!|||||| !||||||!:! !! !|||! !||||||||| !||| HisAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsnGly 12651 : CATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATGGA : 12710 379 : PhePheProValSerLeuGluThrTyrIleSer >>>> Target Intron 1 >>>> : 390 |||||||||||||||||||||||||||! !!!! 359 bp PhePheProValSerLeuGluThrTyrThrThr++ 12711 : TTTTTCCCTGTGTCCTTAGAAACTTATACTACGgt......................... : 12748 391 : IleLeuSerThrAlaIleSerTyrPheThrLeuLeuArgAsnArgAlaGluGlnThrI : 409 ||||||||||||||| ||||||||||||||||||||||||!.!!.!|||.!...!: ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnValGluAspValV 12749 : agattttgAGTACCGCGGCGTCGTACTTCACATTATTGAGAAATAACGTAGAAGATGTAG : 13162 410 : le : 409 !! al 13163 : TT : 13164 vulgar: AmOr85 298 409 . KQ414828.1 12472 13164 + 318 M 91 273 5 0 2 I 0 355 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 12473 13164 318 + . gene_id 5 ; sequence AmOr85 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 12473 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12473 12745 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13104 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 13103 13104 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 13105 13164 . + . KQ414828.1 exonerate:protein2genome:local exon 13105 13164 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 12473 13164 318 + . alignment_id 5 ; Query AmOr85 ; Align 12473 299 273 ; Align 13105 390 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 266 Query range: 315 -> 409 Target range: 28559 -> 29251 316 : MetCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgAspSerThrAsn : 335 :!! !!||||||! !||||||||||||||||||||||||:!!! !! !!!:||| !||| ValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsn 28560 : GTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAAC : 28617 336 : IleAlaAsnAlaThrTyrAsnSerLeuTrpSerPheMetProMetAspLysTyrGlyLys : 355 ||||||.!.:!!..!||| !.!!! !|||! ! !:!:||||||||||||:::|||||| IleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLys 28618 : ATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaa : 28677 356 : MetLeuArgLysAspLeuIleLeuValIleMetArgSerLysSerProCysTyrLeuThr : 375 :::||||||||||||||| !:!!:!!|||:!!|||:!!!:! !!|||! !! !|||||| LeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThr 28678 : ctgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACT : 28737 376 : AlaLeuGlyPhePheProValSerLeuGluThrTyrIleSer >>>> Target Intr : 390 |||! !||||||||| !!:!!||||||||||||!:!! !!.! 410 bp AlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 28738 : GCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt................ : 28784 391 : on 1 >>>> IleLeuSerThrAlaIleSerTyrPheThrLeuLeuArgAsnArgAlaG : 406 |||:!!||||||:!!!!:||||||||||||||||||!:!.!. !! !| ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnCysIleG 28785 : .........agATCATGAGTACATCAATGTCGTATTTCACATTATTAAAACAATGTATCG : 29240 407 : luGlnThrIle : 409 ||.!.|||:!! luAspThrVal 29241 : AGGACACGGTT : 29251 vulgar: AmOr85 315 409 . KQ414828.1 28559 29251 + 266 M 74 222 5 0 2 I 0 406 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28560 29251 266 + . gene_id 6 ; sequence AmOr85 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 28560 28781 . + . KQ414828.1 exonerate:protein2genome:local exon 28560 28781 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 28782 28783 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 28782 29191 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 29190 29191 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 29192 29251 . + . KQ414828.1 exonerate:protein2genome:local exon 29192 29251 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28560 29251 266 + . alignment_id 6 ; Query AmOr85 ; Align 28560 316 222 ; Align 29192 390 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 259 Query range: 186 -> 301 Target range: 10831 -> 11176 187 : IleLeuSerLeuTyrHisValGlyValCysTyrLeuTyrPheAspAsnPheMetCysIle : 206 |||! !.!!|||||| !..!|||:!!||||||!!!! !|||||||||.!!.!.|||||| IleSerGlyLeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIle 10832 : ATTTCAGGACTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATC : 10889 207 : IleAsnLeuHisIleAlaGlyGlnPheArgIleLeuGlnHisArgPheSerAsnValCys : 226 !!:!:!:!!|||:!:::!|||||||||||||||||||||:!!|||!!.!!!!!.:!!! ! MetSerValHisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSer 10890 : ATGAGCGTGCATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCC : 10949 227 : AsnGluMetCysGluLysCysCysTyrGlnLeuSerArgLysSerProTyrLeuSerIle : 246 :!!! !...! !:!!! ! ...:::... ! !! ! ! !!! !!!! ! AspValGlnTyrGlnIleSerGluLysAsnMetGluSerValLeuGluAspCysThrArg 10950 : GACGTACAATATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGT : 11009 247 : CysLysTyrAlaLysLeuLysIleTyrIleArgGlnHisGlnThrLeuIleGluTyrCys : 266 ! ...|||! !|||!!!|||! !|||:!!|||||||||||||||||||||!!:|||! ! ArgSerTyrGluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyr 11010 : AGATCTTACGAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTAC : 11069 267 : ArgLysLeuGluMetValSerAsnPheIleIlePheGlyGlnValLeuLeuPheSerLeu : 286 ..!||||||||| |||! !!.. ||||||.!!|||||||||||||||||||||:!! GluLysLeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerVal 11070 : GAGAAGCTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTG : 11129 287 : LeuIleCysLeuAspGlyTyrLeuIleLeuMetGluAspThrSer : 301 |||||||||||| !||||||! !||||||:!!! ..!! !||| LeuIleCysLeuPheGlyTyrGlnIleLeuLeuValSerIleSer 11130 : TTAATTTGCCTCTTTGGTTATCAGATATTATTGGTTAGTATTTCA : 11176 vulgar: AmOr85 186 301 . KQ414828.1 10831 11176 + 259 M 115 345 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10832 11176 259 + . gene_id 7 ; sequence AmOr85 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 10832 11176 . + . KQ414828.1 exonerate:protein2genome:local exon 10832 11176 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10832 11176 259 + . alignment_id 7 ; Query AmOr85 ; Align 10832 187 345 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 224 Query range: 309 -> 390 Target range: 38517 -> 38760 310 : PheHisLeuIleSerCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeu : 329 ||| !!!:!!! !!:!! !!||||||! !||||||||||||||||||||||||:!! PheAlaThrMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIle 38518 : TTCGCAACGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATA : 38575 330 : IleArgAspSerThrAsnIleAlaAsnAlaThrTyrAsnSerLeuTrpSerPheMetPro : 349 ! !! !!!:||| !|||||||||.!.:!!..!||| !.!!! !|||! ! !:!:||| ThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuPro 38576 : ACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCA : 38635 350 : MetAspLysTyrGlyLysMetLeuArgLysAspLeuIleLeuValIleMetArgSerLys : 369 |||||||||:::||||||:::||||||||||||||| !:!!:!!|||:!!|||:!!!:! MetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArg 38636 : ATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGA : 38695 370 : SerProCysTyrLeuThrAlaLeuGlyPhePheProValSerLeuGluThrTyrIleSer : 389 !!|||! !! !|||||||||! !||||||||| !!:!!||||||||||||!:!! !!.! ArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys 38696 : CGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAG : 38755 390 : Ile : 390 :!! Val 38756 : GTA : 38760 vulgar: AmOr85 309 390 . KQ414828.1 38517 38760 + 224 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38518 38760 224 + . gene_id 8 ; sequence AmOr85 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38518 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38518 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38518 38760 224 + . alignment_id 8 ; Query AmOr85 ; Align 38518 310 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 217 Query range: 174 -> 297 Target range: 37832 -> 38201 175 : MetThrProTyrPheGluMetValPheIleIleGluIleLeuSerLeuTyrHisValGly : 194 |||! !||| ::: ::: ::!! :!! !||||||:!!|||!!.|||.!! MetIleProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValSer 37833 : ATGATTCCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTAGC : 37890 195 : ValCysTyrLeuTyrPheAspAsnPheMetCysIleIleAsnLeuHisIleAlaGlyGln : 214 !.!|||||||||! !|||||| ...... |||::: ||||||:!:||||||||| AlaCysTyrLeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGln 37891 : GCGTGTTACCTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAG : 37950 215 : PheArgIleLeuGlnHisArgPheSerAsnValCysAsnGluMetCysGluLysCysCys : 234 |||||||||||||||:!!|||.!!:!!||||||! ..! !! ! ! !! PheArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSer 37951 : TTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGC : 38010 235 : TyrGlnLeuSerArgLysSerProTyrLeuSerIleCysLysTyrAlaLysLeuLysIle : 254 !:!! ! !!!!!! !..! !! ! !||| ||| !|||!!!|||! ! SerGluAsnProSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsn 38011 : AGTGAAAATCCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAAT : 38070 255 : TyrIleArgGlnHisGlnThrLeuIleGluTyrCysArgLysLeuGluMetValSerAsn : 274 ! !|||!:!|||||||||.!!|||||||||!:!||| !! !|||||| !|||! !!.. CysIleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThr 38071 : TGCATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACG : 38130 275 : PheIleIlePheGlyGlnValLeuLeuPheSerLeuLeuIleCysLeuAspGlyTyrLeu : 294 ! ||| !.!!||||||||||||:!!||||||:!!|||||||||!!!! !! !|||! ! ValIleAlaLeuGlyGlnValLeuMetPheSerIleLeuIleCysPheValValTyrGln 38131 : GTAATTGCACTCGGACAAGTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAA : 38190 295 : IleLeuMet : 297 !|||:!! AlaLeuLeu 38191 : GCACTCCTG : 38201 vulgar: AmOr85 174 297 . KQ414828.1 37832 38201 + 217 M 123 369 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37833 38201 217 + . gene_id 9 ; sequence AmOr85 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37833 38201 . + . KQ414828.1 exonerate:protein2genome:local exon 37833 38201 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37833 38201 217 + . alignment_id 9 ; Query AmOr85 ; Align 37833 175 369 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 2 -> 65 Target range: 21033 -> 21222 3 : SerAsnLysValGlyGlyAspLeuSerIleThrValMetThrPheTyrMetLysIleVal : 22 ||| ||| ! !! !|||:!!|||:!!! !:!! !.!||||||:!! ! :!!||| SerLeuLysTyrArgGlnAspValSerValArgLeuAlaAsnPheTyrLeuTyrValVal 21034 : AGCTTGAAATATCGCCAAGACGTTTCCGTTAGATTAGCCAATTTTTATCTGTATGTCGTC : 21091 23 : GlyPheTrpIleAlaSerAsnTyrValGluGluArgArgArgAsnLeuThrIleSerTyr : 42 |||||||||.!!|||:!!||| !:!!|||||| !! ! !!||| !.!!||| !||| GlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheGlyAsnAlaAlaIleLeuTyr 21092 : GGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCGGAAACGCGGCGATTCTGTAT : 21151 43 : ThrPhePheAlaIlePhePheAlaMetAlaThrGluAlaArgAspLeuTyrPheSerTrp : 62 |||.!! !!.!!:!!||||||!.!||| ! !:!! !|||! ||||||||||||||| ThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSerTrp 21152 : ACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGACTTTATTTCTCCTGG : 21211 63 : GlyAsnPhe : 65 ||||||||| GlyAsnPhe 21212 : GGAAACTTT : 21222 vulgar: AmOr85 2 65 . KQ414828.1 21033 21222 + 160 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21034 21222 160 + . gene_id 10 ; sequence AmOr85 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 21034 21222 . + . KQ414828.1 exonerate:protein2genome:local exon 21034 21222 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21034 21222 160 + . alignment_id 10 ; Query AmOr85 ; Align 21034 3 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 2 -> 72 Target range: 36174 -> 36384 3 : SerAsnLysValGlyGlyAspLeuSerIleThrValMetThrPheTyrMetLysIleVal : 22 ||| ||| ! !! !|||:!!||||||! !:!! !.!|||!:!:!! ! :!!||| SerLeuLysTyrArgGlnAspValSerIleLysLeuAlaAsnPhePheLeuTyrValVal 36175 : AGCTTGAAATATCGTCAAGACGTTTCCATTAAATTAGCCAACTTTTTTCTGTATGTCGTC : 36232 23 : GlyPheTrpIleAlaSerAsnTyrValGluGluArgArgArgAsnLeuThrIleSerTyr : 42 |||||||||.!!|||:!!||| !:!!|||||| !! !|||||| !.!!||| !||| GlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeuTyr 36233 : GGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCGGCGATTCTGTAT : 36292 43 : ThrPhePheAlaIlePhePheAlaMetAlaThrGluAlaArgAspLeuTyrPheSerTrp : 62 |||.!! !!.!!:!!||||||!.!||| ! !:!! !|||! ||||||!:!:!!||| ThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrTyrAlaTrp 36293 : ACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGGCTTTATTACGCCTGG : 36352 63 : GlyAsnPheGlyAspSerIleLeuIleIle : 72 ||||||.!!! !! ||| !|||:!::!: GlyAsnLeuGluValSerGlyLeuLeuLeu 36353 : GGAAACCTTGAAGTAAGTGGATTGTTGTTG : 36384 vulgar: AmOr85 2 72 . KQ414828.1 36174 36384 + 155 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 36175 36384 155 + . gene_id 11 ; sequence AmOr85 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 36175 36384 . + . KQ414828.1 exonerate:protein2genome:local exon 36175 36384 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 36175 36384 155 + . alignment_id 11 ; Query AmOr85 ; Align 36175 3 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 2 -> 65 Target range: 26063 -> 26252 3 : SerAsnLysValGlyGlyAspLeuSerIleThrValMetThrPheTyrMetLysIleVal : 22 ||| ||| ! !! !|||:!!|||:!!! !:!! !.!|||!:!:!! ! :!!||| SerLeuLysTyrArgGlnAspValSerValArgLeuAlaAsnPhePheLeuTyrValVal 26064 : AGCTTGAAATATCGTCAAGACGTTTCCGTTAGATTAGCCAACTTTTTTCTGTATGTCGTC : 26121 23 : GlyPheTrpIleAlaSerAsnTyrValGluGluArgArgArgAsnLeuThrIleSerTyr : 42 |||||||||.!!|||:!!||| !:!!|||||| !! !|||||| !.!!||| !||| GlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeuTyr 26122 : GGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCGGCGATTCTGTAT : 26181 43 : ThrPhePheAlaIlePhePheAlaMetAlaThrGluAlaArgAspLeuTyrPheSerTrp : 62 |||.!! !!.!!:!!||||||!.!||| ! !:!! ! !!! |||||||||:!!||| ThrIleValThrValPhePheValMetTrpLeuGlnLeuGlyGlyLeuTyrPheAlaTrp 26182 : ACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGGGAGGGCTTTATTTCGCCTGG : 26241 63 : GlyAsnPhe : 65 ||||||||| GlyAsnPhe 26242 : GGAAACTTT : 26252 vulgar: AmOr85 2 65 . KQ414828.1 26063 26252 + 153 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26064 26252 153 + . gene_id 12 ; sequence AmOr85 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 26064 26252 . + . KQ414828.1 exonerate:protein2genome:local exon 26064 26252 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 26064 26252 153 + . alignment_id 12 ; Query AmOr85 ; Align 26064 3 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 149 -> 199 Target range: 37450 -> 37600 150 : LeuLysGluAsnIleGlyLysAsnGluThrGluArgIleHisProPheAsnLeuTrpLeu : 169 :::... |||:!!||||||||||||:!!!!:||| !||| !!:!:!!:!!|||||| IleSerAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 37451 : atttcagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 37508 170 : AspGluSerTrpTyrMetThrProTyrPheGluMetValPheIleIleGluIleLeuSer : 189 ||| ! !!! ! !!!:|||||||||:::|||:::...::!||||||:!!:!!||| !! AspLeuProLeuSerIleThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 37509 : GATCTACCATTATCCATAACAccatattatgaaattacttACATAATACAGGTATTACCA : 37568 190 : LeuTyrHisValGlyValCysTyrLeuTyr : 199 :!!!:! ! ... ::::::||| IlePheSerArgGlnThrIlePheIleTyr 37569 : ATTTTCTCAAGGCaaactatatttatatat : 37600 vulgar: AmOr85 149 199 . KQ414828.1 37450 37600 + 118 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37451 37600 118 + . gene_id 13 ; sequence AmOr85 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37451 37600 . + . KQ414828.1 exonerate:protein2genome:local exon 37451 37600 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37451 37600 118 + . alignment_id 13 ; Query AmOr85 ; Align 37451 150 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 152 -> 199 Target range: 27348 -> 27489 153 : AsnIleGlyLysAsnGluThrGluArgIleHisProPheAsnLeuTrpLeuAspGluSer : 172 |||:!!||||||||||||:!!!!:||| !||| !|||:!!:!!|||!!!||| ! !! AsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPheAspLeuPro 27349 : AATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTCGATCTACCA : 27406 173 : TrpTyrMetThrProTyrPheGluMetValPheIleIleGluIleLeuSerLeuTyrHis : 192 ! ! !:!:|||||||||:::|||:::...::!||||||:!!:!!||| !!:!!!:! LeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuProIlePheSer 27407 : TTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCAATTTTCTCA : 27466 193 : ValGlyValCysTyrLeuTyr : 199 ... ::::::||| ArgGluThrIlePheIleTyr 27467 : AGggaaacaatatttatatat : 27489 vulgar: AmOr85 152 199 . KQ414828.1 27348 27489 + 116 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27349 27489 116 + . gene_id 14 ; sequence AmOr85 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27349 27489 . + . KQ414828.1 exonerate:protein2genome:local exon 27349 27489 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27349 27489 116 + . alignment_id 14 ; Query AmOr85 ; Align 27349 153 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr82 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1168 Query range: 0 -> 402 Target range: 7890 -> 13155 1 : MetGlnThrGluSerGlnValAspIleSerMetAsnLeuSerThrPhePheLeuLysAsn : 20 ||||||||||||!.!.!. !|||||||||!!:|||||||||! !|||||||||:::||| MetGlnThrGluLysAspSerAspIleSerIleAsnLeuSerLysPhePheLeuArgAsn 7891 : ATGCAAACGGAGAAGGATTCGGACATATCGATCAACTTGTCGAAATTCTTCTTGCGCAAT : 7948 21 : ValGlyValTrpMetSerAspAsnProAsnGluGlnArgGlnIleLysMetLeuLeuIle : 40 ||||||:!!|||! !:!!!!:|||! ! |||.!.|||:!!! ||| !|||:!! ! ValGlyLeuTrpArgAlaGluAsnHisAlaGluAsnArgLysArgLysAlaLeuValAla 7949 : GTCGGCCTGTGGAGGGCTGAGAATCACGCGGAGAATCGTAAAAGGAAAGCGTTGGTCGCC : 8008 41 : AsnThrThrTrpIleLeuLeuSerGlyIleValIleAsnGlyArgAspLeuTyrPheThr : 60 !!|||! !|||! !:!!!!!! !!.!||||||:!!.!. !||||||:!!||||||||| TyrThrIleTrpAsnMetPheLeuAlaIleValValGluThrArgAspMetTyrPheThr 8009 : TACACGATTTGGAACATGTTTTTGGCCATAGTGGTTGAAACGAGAGATATGTATTTCACC : 8068 61 : LeuLeuTyrHisGly >>>> Target Intron 1 >>>> AspIleLeuTyrSerI : 71 ! !!!!||| ! ||| 796 bp |||||||||||| !! TrpPheTyrLysGly++ ++AspIleLeuTyrValS 8069 : TGGTTCTATAAAGGCgt.........................agGATATTCTTTACGTTA : 8897 72 : leThrAsnAsnIleThrMetIleMetAlaLeuIleLysIleSerIleIleIleIleTyrL : 91 !|||||| :!:!:!:!!|||:!:.!! !||||||:!!!!!:!!:!!:!!|||:!!| erThrAsnLeuLeuSerValIleLeuThrThrIleLysLeuThrValValLeuIleHisL 8898 : GTACCAACTTACTGAGCGTGATCTTAACTACGATCAAGCTAACTGTCGTACTAATACACA : 8957 92 : ysGlyLysPheLeuAsnLeuIleAlaCysMetGlnGlnAsnPheTrpLysValAsnTyrA : 111 ||! !:!!|||:!!!:!||||||! !! !||| ! :!!:!!||||||!!.|||:!!|||| ysValGluPheMetSerLeuIleAspTyrMetTyrGluHisPheTrpAsnValAspTyrA 8958 : AAGTGGAATTCATGAGTCTGATTGATTACATGTACGAACATTTCTGGAACGTGGATTACG : 9017 112 : spTyrArgGluLysGluIleLeuAsnAspCysArgLysThrCysIlePhePheValSerC : 131 || !!.!||||||..!|||:!:::::::|||:::||||||||||||.!!|||..!||| spLeuHisGluLysArgIleMetAspAsnCysLysLysThrCysIleIlePheThrSerS 9018 : ATCTTCACGAGAAAAGAATTATggataattgtaaaaaaactTGCATCATCTTCACTTCAA : 9077 132 : ysLeuThrThrMetValIleCysAlaMetIleSerTyrLeuIleIleProPheIleAla{ : 151 !!:!!||||||!!:! !|||||||||!!:|||||||||:!! ! !|||||||||::!{ erValThrThrIleGlyIleCysAlaIleIleSerTyrIleAlaThrProPheIleSer{ 9078 : GCGTCACTACCATTGGCATATGCGCTATAATATCTTACATAGCGACACCGTTTATCAGT{ : 9137 152 : Ly} >>>> Target Intron 2 >>>> {s}GlyAsnAsnGluSerGluArgMetL : 160 !} 195 bp { } !!:!|||:!!||||||||| !! As}++ ++{p}GlnSerAsnLysSerGluArgAlaP 9138 : GA}gt.........................ag{T}CAAAGCAACAAATCTGAAAGAGCGT : 9359 161 : euProPheAsnMetTrpIleAsnLeuProLeuSerLysThrProTyrTyrGluIleMetP : 180 !!! !|||:!!||||||:!!||||||||||||!!! :!!|||||||||||| !|||! heLeuPheAspMetTrpLeuAsnLeuProLeuThrValSerProTyrTyrGluGlyMetL 9360 : TTCTGTTCGACATGTGGCTCAATTTACCTCTGACTGTTTCGCCTTACTACGAAGGAATGT : 9419 181 : heLeuIleGln >>>> Target Intron 3 >>>> AlaMetCysValTyrTyrIl : 190 !. !:!!||| 1401 bp ! ! :!!|||!:!! euAlaValGln++ ++IleSerGlyLeuTyrPheTh 9420 : TGGCTGTACAGgt.........................agATTTCAGGACTGTATTTCAC : 10850 191 : eGlyValAlaSerPheCysPheAspAsnIlePheCysIleMetAlaValHisLeuAlaGl : 210 !|||:!!..!! !||||||||||||||||||||||||||||||::!|||||||||::!|| rGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerValHisLeuSerGl 10851 : AGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTGCATTTGAGTGG : 10910 211 : yGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuTyrAspValGluCys<->IleGl : 229 |||||||||||||||||||||||||||||||||||||! !||||||:!!! ! |||.. yGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGlnTyrGlnIleSe 10911 : CCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAATATCAGATAAg : 10970 230 : uMetHisLysLysAspSerIleLeuAlaAsnArgValProLysPheTyrGluLysPheAr : 249 . ... :::|||:!!|||! !:!! !!..!! !!:!! !||||||||||||!: rGluLysAsnMetGluSerValLeuGluAspCysThrArgArgSerTyrGluLysPheLy 10971 : cgagaaaaatatggaatcTGTATTGGAAGACTGTACACGTAGATCTTACGAGAAATTTAA : 11030 250 : gLysCysValGlnHisHisGlnAlaLeuIleAspPheTyrGlnAsnLeuGluAsnValTy : 269 !!..! !|||!:!!!.||||||.!!|||||||||!:!|||:!!!!.||||||:!!||||| sSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLysLeuGluHisValTy 11031 : GAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAGCTTGAACACGTTTA : 11090 270 : rThrArgIleAlaPheGlyGluMetLeuValTyrSerIleLeuIleCysLeuPheGlyTy : 289 ||||!:!||| !.!!|||:!!:!!|||:!!!:!|||:!:|||||||||||||||||||| rThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIleCysLeuPheGlyTy 11091 : CACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATTTGCCTCTTTGGTTA : 11150 290 : rGlnValLeuVal >>>> Target Intron 4 >>>> AlaThrAlaSerPheAla : 299 ||||:!!|||:!! 1305 bp |||!.!.!!|||.!!||| rGlnIleLeuLeu++ ++AlaAsnThrSerLeuAla 11151 : TCAGATATTATTGgt.........................agGCTAATACTTCTCTTGCA : 12485 300 : ArgArgSerIlePheValPheLeuLeuAsnGlySerThrPheLeuLeuPheMetValThr : 319 |||||||||||||||:!!||||||:!! !|||:!!! ! !!|||||||||||| !!||| ArgArgSerIlePheMetPheLeuIleCysGlyAlaMetValLeuLeuPheMetPheThr 12486 : AGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTTTTATTGTTTATGTTCACC : 12545 320 : TyrSerCysAsnGlyValIleGluHisSerAspAsnValAlaIleGlyAlaTyrSerAla : 339 |||||||||||| !|||||||||!!.|||||||||:!!|||.!!!.!|||||||||||| TyrSerCysAsnMetValIleGluGlnSerAspAsnIleAlaPheAlaAlaTyrSerAla 12546 : TACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCTTTTGCGGCGTATTCGGCA : 12605 340 : LeuTrpThrIleValProMetAspLysPheGlyArgMetLeuArgLysAspLeuIleMet : 359 ||||||||| !:!!||||||:!!||| !|||!:!! !|||||| ! |||||||||||| LeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeuArgHisAspLeuIleMet 12606 : CTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTACGGCATGATTTGATAATG : 12665 360 : ValIleThrArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePheProValSer : 379 |||||| !||||||||||||||||||||||||||||||||||||||||||||||||||| ValIleGlyArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePheProValSer 12666 : GTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATGGATTTTTCCCTGTGTCC : 12725 380 : LeuGluSerTyrThrLys >>>> Target Intron 5 >>>> IleLeuSerThrA : 390 ||||||!!!||||||! ! 359 bp ||||||||||||| LeuGluThrTyrThrThr++ ++IleLeuSerThrA 12726 : TTAGAAACTTATACTACGgt.........................agattttgAGTACCG : 13117 391 : laLeuSerTyrPheThrLeuLeuSerAsnArgValGlu : 402 || !||||||||||||||||||!!!|||!.!|||||| laAlaSerTyrPheThrLeuLeuArgAsnAsnValGlu 13118 : CGGCGTCGTACTTCACATTATTGAGAAATAACGTAGAA : 13155 vulgar: AmOr82 0 402 . KQ414828.1 7890 13155 + 1168 M 65 195 5 0 2 I 0 792 3 0 2 M 85 255 S 0 2 5 0 2 I 0 191 3 0 2 S 1 1 M 32 96 5 0 2 I 0 1397 3 0 2 M 44 132 G 0 3 M 66 198 5 0 2 I 0 1301 3 0 2 M 92 276 5 0 2 I 0 355 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 7891 13155 1168 + . gene_id 1 ; sequence AmOr82 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 7891 8085 . + . KQ414828.1 exonerate:protein2genome:local exon 7891 8085 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 8086 8087 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 8086 8881 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 8880 8881 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 8882 9138 . + . KQ414828.1 exonerate:protein2genome:local exon 8882 9138 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 9139 9140 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 9139 9333 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 9332 9333 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 9334 9430 . + . KQ414828.1 exonerate:protein2genome:local exon 9334 9430 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 9431 9432 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 9431 10831 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 10830 10831 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 10832 11164 . + . KQ414828.1 exonerate:protein2genome:local exon 10832 11164 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 11165 11166 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 11165 12469 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 12468 12469 . + . intron_id 3 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 12470 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12745 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13104 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 13103 13104 . + . intron_id 4 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 13105 13155 . + . KQ414828.1 exonerate:protein2genome:local exon 13105 13155 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 7891 13155 1168 + . alignment_id 1 ; Query AmOr82 ; Align 7891 1 195 ; Align 8882 66 255 ; Align 9335 152 96 ; Align 10832 184 132 ; Align 10967 228 198 ; Align 12470 294 276 ; Align 13105 386 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr82 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 720 Query range: 60 -> 402 Target range: 21876 -> 24190 61 : LeuLeuTyrHisGlyAspIleLeuTyrSerIleThrAsnAsnIleThrMetIleMetAla : 80 :::|||::: ! !:!!|||! ! ! !|||!:!:!!.!!:!!:!!:!!! ! IleLeuPhePheGlnValCysMetTyrMetAlaCysAsnSerLeuAlaLeuValLeuAsp 21877 : attttgttttttcaggTTTGCATGTACATGGCATGCAACAGTTTAGCCCTGGTTTTGGAT : 21934 81 : LeuIleLysIleSerIleIleIleIleTyrLysGlyLysPheLeuAsnLeuIleAlaCys : 100 :!!|||||||||! !:!!:!!:!!:!! ||| !|||||||||..!||||||! !! ! IleIleLysIlePheValLeuLeuValArgLysLysLysPheLeuGlyLeuIleGluTyr 21935 : ATAATCAAGATTTTCGTCCTACTCGTACGGAAGAAAAAGTTTCTCGGTCTGATTGAGTAC : 21994 101 : MetGlnGlnAsnPheTrpLysValAsnTyrAspTyrArgGluLysGluIleLeuAsnAsp : 120 ||||||:!!||||||||| ! :!!||||||||| ! !|||!!....|||:!! !! MetGlnLysAsnPheTrpHisLeuAsnTyrAspGlnAspGluAsnSerIleIleAlaHis 21995 : ATGCAGAAGAATTTTTGGCATTTGAACTACGACCAGGACGAGAATTCTATTATCGCACAC : 22054 121 : CysArgLysThrCysIlePhePheValSerCysLeuThrThrMetValIleCysAlaMet : 140 ...!:!::!|||||||||!:!||||||!!! !!!!:!! ! ! !! !.!!:!: AlaLysArgThrCysIleTyrPheValCysValPheSerPheCysSerGlnSerThrVal 22055 : GCGAAACGAACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTTCTCAATCTACAGTT : 22114 141 : IleSerTyrLeuIleIleProPheIle{A} >>>> Target Intron 1 >>>> { : 150 .!!||||||:!!|||! ||||||:!!{ } 173 bp { PheSerTyrIleIleArgProPheVal{T}++ +-{ 22115 : TTTTCCTATATAATAAGGCCATTTGTA{T}gt.........................aa{ : 22318 151 : la}LysGlyAsnAsnGluSerGluArgMetLeuProPheAsnMetTrpIleAsnLeuPro : 169 !} |||!!.|||||||||!!:||| ! ! !!:!:!!||||||:!!:!!|||||| yr}LeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuPro 22319 : AT}CTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCA : 22374 170 : LeuSerLysThrProTyrTyrGluIleMetPheLeuIleGln >>>> Target Intr : 184 |||||| !|||||||||||||||||| ::!:!!|||||| 307 bp LeuSerValThrProTyrTyrGluIleThrTyrIleIleGln++ 22375 : TTATCCGTAACAccatattatgaaattacttACATAATACAGgt................ : 22421 185 : on 2 >>>> AlaMetCysValTyrTyrIleGlyValAlaSerPheCysPheAspAsnI : 200 |||:!:! !|||||| ! :!!.!!!.!..!! !.!!||||||||| | ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleI 22422 : .........agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatca : 22774 201 : lePheCysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeuGlnTyrArgLeuT : 220 ||||| |||:::...:!!|||:!!||||||||||||||||||||||||||||||:!!. lePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleA 22775 : tttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTG : 22834 221 : hrLysLeuTyrAspVal<->GluCysIleGluMetHisLysLysAspSerIleLeuAlaA : 239 !!!!.:!!! ! !:!! ||| :!::!!! !:!!!!. |||! ! !! ! laAsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSerThrAspGluL 22835 : CCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAAT : 22894 240 : snArgValProLysPheTyrGluLysPheArgLysCysValGlnHisHisGlnAlaLeuI : 259 ! ! !|||! !||| ||||||!:!!!.|||:!!|||!!.||||||||||||| euTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuI 22895 : TATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAA : 22954 260 : leAspPheTyrGlnAsnLeuGluAsnValTyrThrArgIleAlaPheGlyGluMetLeuV : 279 ||!!:|||! ! !!..||||||.!.|||!:!||| !|||!.!.!!|||:!!:!:|||: leGluPheCysAlaThrLeuGluGluValPheThrValIleValLeuGlyGlnValLeuM 22955 : TTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCTAA : 23014 280 : alTyrSerIleLeuIleCysLeuPheGlyTyrGlnValLeuVal >>>> Target In : 294 !!! !|||||||||||||||!!!.!!|||||||||||||||:!! 492 etSerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeu++ 23015 : TGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGgt.............. : 23061 295 : tron 3 >>>> AlaThrAlaSerPheAlaArgArgSerIlePheValPheLeuLeuAs : 309 bp !! ! !||||||! ! !||| ! !|||!.!! !!!!|||! ++IleLysLeuSerPheGluSerArgValAlaPheAlaCysPheLeuMe 23062 : ...........agATAAAGTTATCATTTGAATCGCGCGTTGCTTTCGCGTGCTTCTTGAT : 23596 310 : nGlySerThrPheLeuLeuPheMetValThrTyrSerCysAsnGlyValIleGluHisSe : 329 !.!!! ! !! !|||!::||| !!||||||||||||:!! !!:!!! ! !.!.|| tMetGlyMetSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSe 23597 : GATGGGCATGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCATAACAACAGAAAG : 23656 330 : rAspAsnValAlaIleGlyAlaTyrSerAlaLeuTrpThrIleValProMetAspLysPh : 349 | |||:!!||| !..!!.!|||:!!!.!! !|||! !! !:!!|||||||||||||| rLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPh 23657 : CCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATGGACAAATT : 23716 350 : eGlyArgMetLeuArgLysAspLeuIleMetValIleThrArgSerArgArgValCysCy : 369 ||||!:!:!!|||||||||!!:||| !|||:!!||| !|||:!!|||||| !! !.. eGlyLysLeuLeuArgLysGluLeuGlnMetLeuIleLeuArgAlaArgArgProSerAl 23717 : TGGAAAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGGGCGAGACGACCTTCCGC : 23776 370 : sLeuThrAlaAsnGlyPhePheProValSerLeuGluSerTyrThrLys >>>> Targ : 386 !||||||||| !||||||||| !!:!!|||||||||!!!!:!|||||| aLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 23777 : TTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt......... : 23829 387 : et Intron 4 >>>> IleLeuSerThrAlaLeuSerTyrPheThrLeuLeuSerAsn : 399 313 bp |||:!!||||||:!!:!!||||||||||||||||||!.!.!. ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGln 23830 : ................agATCATGAGTACATCAATGTCGTATTTCACATTATTAAAACAA : 24179 400 : ArgValGlu : 402 !!:!!||| CysIleGlu 24180 : TGTATCGAG : 24190 vulgar: AmOr82 60 402 . KQ414828.1 21876 24190 + 720 M 89 267 S 0 1 5 0 2 I 0 169 3 0 2 S 1 2 M 33 99 5 0 2 I 0 303 3 0 2 M 42 126 G 0 3 M 68 204 5 0 2 I 0 488 3 0 2 M 92 276 5 0 2 I 0 309 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21877 24190 720 + . gene_id 2 ; sequence AmOr82 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 21877 22144 . + . KQ414828.1 exonerate:protein2genome:local exon 21877 22144 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22145 22146 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22145 22317 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22316 22317 . + . intron_id 0 ; splice_site "aA" KQ414828.1 exonerate:protein2genome:local cds 22318 22418 . + . KQ414828.1 exonerate:protein2genome:local exon 22318 22418 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22419 22420 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22419 22725 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 23058 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23059 23060 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23059 23550 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 23549 23550 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 23551 23826 . + . KQ414828.1 exonerate:protein2genome:local exon 23551 23826 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23827 23828 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23827 24139 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 24138 24139 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 24140 24190 . + . KQ414828.1 exonerate:protein2genome:local exon 24140 24190 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21877 24190 720 + . alignment_id 2 ; Query AmOr82 ; Align 21877 61 267 ; Align 22320 151 99 ; Align 22726 184 126 ; Align 22855 226 204 ; Align 23551 294 276 ; Align 24140 386 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr82 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 554 Query range: 151 -> 405 Target range: 2888 -> 6477 152 : GlyAsnAsnGluSerGluArgMetLeuProPheAsnMetTrpIleAsnLeuProLeuSerLy : 172 |||...|||||||||!!:|||:!:||| ! !!|||.!.||||||:!!||||||:!!!!!! GlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuProIleThrIl 2889 : ggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCCGATAACCAT : 2949 173 : sThrProTyrTyrGluIleMetPheLeuIleGln >>>> Target Intron 1 >>>> : 184 ||||||||||||||||||:::||| |||||| 406 bp eThrProTyrTyrGluIleLeuPheThrIleGln++ + 2950 : CACACCATactatgaaatattatttacgaTACAGgt.........................a : 3389 185 : AlaMetCysValTyrTyrIleGlyValAlaSerPheCysPheAspAsnIlePheCysIleM : 204 !.!. !:!! |||:!! !!:!!::!! !.!!|||.!!||||||.!!.!.|||!!:! +IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheLeuCysMetI 3390 : gATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTCTGTGCATGA : 3451 205 : etAlaValHisLeuAlaGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuTyrAsp : 224 !: !:!!||| !||| !|||||||||||||||||||||||||||:!!!!.:!!! !! ! leAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnValCysGly 3452 : TCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGT : 3511 225 : ValGluCysIleGluMetHisLysLysAspSerIleLeuAlaAsnArgValProLysPheTy : 245 !.!.!. !...! ||| ...... !!::!!.! ! !:!!! !|| AlaAsn---GluArgSerAspLysIleSerLysLysThrProSerAsnSerAspGluCysTy 3512 : GCAAAC---GAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTA : 3571 246 : rGluLysPheArgLysCysValGlnHisHisGlnAlaLeuIleAspPheTyrGlnAsnLeuG : 266 |! ||||||!:!!!.|||:!!|||!!.|||||||||||||||!!:!:!! !.!.!!.|||: rAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnLysLeuG 3572 : CGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACAAACTTC : 3634 267 : luAsnValTyrThrArgIleAlaPheGlyGluMetLeuValTyrSerIleLeuIleCysLeu : 286 !!.!.|||!:! !! !.!!!.!.!!!.!:!!:!!|||:!!!:!|||:!:|||!!:|||||| lnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeu 3635 : AAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTC : 3694 287 : PheGlyTyrGlnValLeuValAlaThrAlaSerPheAlaArgArgSerIlePheValPheLe : 307 !|||||| !|||:!!|||::!! ! !! ! !!:!|||!:!|||...|||||||| AspGlyTyrLeuValMetValSerArgTyrTyrLysIleGlnArgAsnIleIleValPheLe 3695 : GATGGATATTTGGTGATGGTTAGTAGGTATTACAAAATTCAACGCAATATCAtagttttctt : 3757 308 : uLeuAsn{G} >>>> Target Intron 2 >>>> {ly}SerThrPheLeuLeuPheM : 317 |...:::{|} 454 bp {||}!!! !! !! !|||!!.| uPheSer{G}-+ -+{ly}CysLeuCysGlnLeuLeuM 3758 : attttct{g}at.........................gg{GA}TGCCTGTGCCAACTGTTGA : 4241 318 : etValThrTyrSerCysAsnGlyValIleGluHisSerAspAsnValAlaIleGlyAlaTyr : 337 || !!||||||||||||:!! !!:!!|||..!.!.||| |||||||||! !!.! !||| etPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIleTyr 4242 : TGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATATAC : 4301 338 : SerAlaLeuTrpThrIleValProMetAspLysPheGlyArgMetLeuArgLysAspLeuIl : 358 ..!..!! !|||! ! !:!!|||||||||!:!! !||||||||||||||||||||||||! AspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAspLeuTh 4302 : GACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGAC : 4364 359 : eMetValIleThrArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePheProValS : 379 !.!.|||||| !||||||||| ! !||||||||||||||| !|||||||||||||||| rPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePheProValS 4365 : ATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGT : 4427 380 : erLeuGluSerTyrThrLys >>>> Target Intron 3 >>>> IleLeuSerThrA : 390 ||||||||!!!||||||..! 1970 bp :!!:!!||||||| erLeuGluThrTyrThrSer++ ++ValIleSerThrA 4428 : CACTGGAAACGTACACTTCGgt.........................agGTTATAAGTACAG : 6430 391 : laLeuSerTyrPheThrLeuLeuSerAsnArgValGluThrAlaAsn : 405 ||:!!||||||||||||||||||!!!.!.|||:!!||| !::!||| laValSerTyrPheThrLeuLeuArgGlnArgIleGluAspSerAsn 6431 : CAGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAGGACAGCAAT : 6477 vulgar: AmOr82 151 405 . KQ414828.1 2888 6477 + 554 M 32 96 5 0 2 I 0 402 3 0 2 M 43 129 G 1 0 M 82 246 S 0 1 5 0 2 I 0 450 3 0 2 S 1 2 M 75 225 5 0 2 I 0 1966 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2889 6477 554 + . gene_id 3 ; sequence AmOr82 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2889 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2889 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3766 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3766 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 3767 3768 . + . intron_id 2 ; splice_site "at" KQ414828.1 exonerate:protein2genome:local intron 3767 4220 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4219 4220 . + . intron_id 1 ; splice_site "GG" KQ414828.1 exonerate:protein2genome:local cds 4221 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4221 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6477 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6477 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2889 6477 554 + . alignment_id 3 ; Query AmOr82 ; Align 2889 152 96 ; Align 3391 184 129 ; Align 3520 228 246 ; Align 4223 311 225 ; Align 6418 386 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr82 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 517 Query range: 151 -> 402 Target range: 37465 -> 39214 152 : GlyAsnAsnGluSerGluArgMetLeuProPheAsnMetTrpIleAsnLeuProLeuSer : 171 |||!!.|||||||||!!:||| ! ! !!:!:!!||||||:!!:!!|||||||||||| GlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuProLeuSer 37466 : GGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCATTATCC : 37523 172 : LysThrProTyrTyrGluIleMetPheLeuIleGln >>>> Target Intron 1 > : 184 ! !|||||||||||||||||| ::!:!!|||||| 307 bp IleThrProTyrTyrGluIleThrTyrIleIleGln++ 37524 : ATAACAccatattatgaaattacttACATAATACAGgt...................... : 37564 185 : >>> AlaMetCysValTyrTyrIleGlyValAlaSerPheCysPheAspAsnIlePheC : 202 |||:!:! !|||||| ! :!!.!!!.!..!! !.!!||||||||| |||||| ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIlePheP 37565 : ...agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatttttt : 37923 203 : ysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysL : 222 |||:::...:!!|||:!!||||||||||||||||||||||||||||||:!!.!!!!.: heIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnV 37924 : tcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATG : 37983 223 : euTyrAspVal<->GluCysIleGluMetHisLysLysAspSerIleLeuAlaAsnArgV : 241 !!! ! !:!! ||| :!::!!! !:!!!!. |||! ! !! ! ! alSerGlyLeuSerGluIleValLysSerSerGluAsnProSerThrAspGluLeuTyrS 37984 : TGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAATTATACT : 38043 242 : alProLysPheTyrGluLysPheArgLysCysValGlnHisHisGlnAlaLeuIleAspP : 261 ! !|||! !||| ||||||!:!!!.|||:!!|||!!.|||||||||||||||!!:| erGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluP 38044 : CAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAAT : 38103 262 : heTyrGlnAsnLeuGluAsnValTyrThrArgIleAlaPheGlyGluMetLeuValTyrS : 281 ||! ! !!..||||||.!.|||!:!||| !||||||.!!|||:!!:!:|||:!!!:!| heCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnValLeuMetPheS 38104 : TTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCTAATGTTTA : 38163 282 : erIleLeuIleCysLeuPheGlyTyrGlnValLeuValAlaThrAla >>>> Target : 297 ||||||||||||||!!! !!! !||||||!.!|||:!!!.!!:! ! 2 erIleLeuIleCysPheValValTyrGlnAlaLeuLeuValSerIle++ 38164 : GCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGGTGAGTATCgt........... : 38213 298 : Intron 2 >>>> SerPheAlaArgArgSerIlePheValPheLeuLeuAsnGlySe : 311 80 bp :::||| !!!! !! :!!||| ! !! !.! ++AsnPheTyrTyrLeuTrpAsn***MetPheAlaThrMetThrGl 38214 : ..............agaatttttattacctgTGGAATTAAATGTTCGCAACGATGACGGG : 38533 312 : rThrPheLeuLeuPheMetValThrTyrSerCysAsnGlyValIleGluHisSerAspAs : 331 !..! !! !|||!::||| !!||||||||||||:!! !!:!!! ! !.!.||| || yValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAs 38534 : CGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAA : 38593 332 : nValAlaIleGlyAlaTyrSerAlaLeuTrpThrIleValProMetAspLysPheGlyAr : 351 |:!!||| !..!!.!|||:!!!.!! !|||! !! !:!!||||||||||||||||||:: nIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLy 38594 : CATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaa : 38653 352 : gMetLeuArgLysAspLeuIleMetValIleThrArgSerArgArgValCysCysLeuTh : 371 ::::||||||||||||||| !:!!:!!||| !|||:!!|||||| !! !! !||||| sLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuTh 38654 : actgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGAC : 38713 372 : rAlaAsnGlyPhePheProValSerLeuGluSerTyrThrLys >>>> Target Int : 386 |||| !||||||||| !!:!!|||||||||!!!!:!|||||| 406 b rAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 38714 : TGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt............... : 38760 387 : ron 3 >>>> IleLeuSerThrAlaLeuSerTyrPheThrLeuLeuSerAsnArgVal : 401 p |||:!!||||||:!!:!!||||||||||||||||||!.!.!.!!!:!! ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnSerIle 38761 : ..........agATCATGAGTACATCAATGTCGTATTTCACATTATTAAAACAAAGTATC : 39209 402 : Glu : 402 !!: Asp 39210 : GAC : 39214 vulgar: AmOr82 151 402 . KQ414828.1 37465 39214 + 517 M 32 96 5 0 2 I 0 303 3 0 2 M 42 126 G 0 3 M 71 213 5 0 2 I 0 276 3 0 2 M 89 267 5 0 2 I 0 402 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37466 39214 517 + . gene_id 4 ; sequence AmOr82 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37466 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37466 37561 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 38210 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 38210 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 38211 38212 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 38211 38490 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 38489 38490 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 38491 38757 . + . KQ414828.1 exonerate:protein2genome:local exon 38491 38757 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 38758 38759 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 38758 39163 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 39162 39163 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 39164 39214 . + . KQ414828.1 exonerate:protein2genome:local exon 39164 39214 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37466 39214 517 + . alignment_id 4 ; Query AmOr82 ; Align 37466 152 96 ; Align 37869 184 126 ; Align 37998 226 213 ; Align 38491 297 267 ; Align 39164 386 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr82 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 492 Query range: 180 -> 402 Target range: 32795 -> 34310 181 : LeuIleGlnAlaMetCysValTyrTyrIleGlyValAlaSerPheCysPheAspAsnIle : 200 |||! ||||||:!:! !|||||| ! :!!||||||..!! !.!!||||||||||||||| LeuThrGlnAlaLeuSerValTyrGlnValGlyValCysTyrLeuCysPheAspAsnIle 32796 : ctCACGCAGGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCTttgataacatt : 32853 201 : PheCysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeuGlnTyrArgLeuThr : 220 ||| ||||||..!:!!|||:!!||||||||||||||||||||||||||||||:!!.!! PhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAla 32854 : tttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCC : 32913 221 : LysLeuTyrAspVal<->GluCysIleGluMetHisLysLysAspSerIleLeuAlaAsn : 239 !!.:!!! ! !:!! ||| :!::!!! :!! ! !!. |||! !! ! AsnValSerGlyLeuSerGluIleValLysSerAsnAspAsnThrSerThrAlaGluLeu 32914 : AATGTGTCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACAAGCACGGCTGAATTA : 32973 240 : ArgValProLysPheTyrGluLysPheArgLysCysValGlnHisHisGlnAlaLeuIle : 259 ! ! !|||! !||| ||||||!:!!!.|||:!!|||!!.||||||||||||||| TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 32974 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTaatt : 33033 260 : AspPheTyrGlnAsnLeuGluAsnValTyrThrArgIleAlaPheGlyGluMetLeuVal : 279 :::||| ::: ||||||.!.|||!:!||| !|||!.!.!!|||:!!:!:|||:!! GluPheCysGluIleLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMet 33034 : gaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTAATG : 33093 280 : TyrSerIleLeuIleCysLeuPheGlyTyrGlnValLeuVal >>>> Target Intr : 294 !:!||||||:!!||||||!!! !||||||:!!||||||:!! 406 bp PheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeu++ 33094 : TTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGgt................ : 33140 295 : on 1 >>>> AlaThrAlaSerPheAlaArgArgSerIlePheValPheLeuLeuAsnG : 310 !||| ! !!|||! ! !||| ! !|||..!! !!!!|||! ! ++IleThrLeuProPheGluSerArgValAlaPheThrCysPheLeuIleT 33141 : .........agATAACGTTACCATTTGAATCGCGCGTTGCTTTCACGTGCTTCTTGATTA : 33592 311 : lySerThrPheLeuLeuPheMetValThrTyrSerCysAsnGlyValIleGluHisSerA : 330 !.!!..! !! !|||!::||| !!||||||||||||||| !!:!!! ! !.!.||| hrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAsnCysIleThrThrGluSerL 33593 : CGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCAATTGCATAACAACAGAAAGCC : 33652 331 : spAsnValAlaIleGlyAlaTyrSerAlaLeuTrpThrIleValProMetAspLysPheG : 350 |||:!!||| !..!!.!|||:!!!.!! !|||! !! !:!!|||||||||||||||| euAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheG 33653 : TGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATggataaatttg : 33712 351 : lyArgMetLeuArgLysAspLeuIleMetValIleThrArgSerArgArgValCysCysL : 370 ||::::::||||||||||||||| !:!!:!!||| !|||:!!|||||| !! !..!| lyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerAlaL 33713 : gaaaactgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCGCTT : 33772 371 : euThrAlaAsnGlyPhePheProValSerLeuGluSerTyrThrLys >>>> Target : 386 |||||||| !||||||||| !!:!!!!!||||||!!!!:!|||||| 4 euThrAlaCysGlyPhePheSerIleThrLeuGluThrPheThrLys++ 33773 : TGACTGCCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTACTAAGgt........... : 33822 387 : Intron 2 >>>> IleLeuSerThrAlaLeuSerTyrPheThrLeuLeuSerAsnAr : 400 40 bp |||:!!||||||:!!:!!||||||||||||||||||!.!.!.!! ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnSe 33823 : ..............agATCATGAGTACATCAATGTCGTATTTCACCCTACTAAAACAAAG : 34302 401 : gValGlu : 402 !!.!||| rAlaGlu 34303 : TGCCGAG : 34310 vulgar: AmOr82 180 402 . KQ414828.1 32795 34310 + 492 M 45 135 G 0 3 M 68 204 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32796 34310 492 + . gene_id 5 ; sequence AmOr82 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32796 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32796 33137 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 2 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34310 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34310 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32796 34310 492 + . alignment_id 5 ; Query AmOr82 ; Align 32796 181 135 ; Align 32934 226 204 ; Align 33544 294 276 ; Align 34260 386 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr82 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 276 Query range: 56 -> 188 Target range: 26897 -> 27465 57 : LeuTyrPheThrLeuLeuTyrHisGlyAspIleLeuTyrSerIleThrAsnAsnIleThr : 76 |||||| ...|||::: !! ! !:!!|||! ! ! !|||..!:!!.!! LeuTyrVal***PheLeuPheLeuGlnValCysMetTyrMetAlaGlyAsnGlyLeuAla 26898 : ttatacgtctaatttctatttctacaGGTTTGCATGTACATGGCTGGCAACGGTTTAGCC : 26955 77 : MetIleMetAlaLeuIleLysIleSerIleIleIleIleTyrLysGlyLysPheLeuAsn : 96 |||:!!:!!! !:!!|||||||||! !! !:!!:!!:!!:!!||| !|||||||||..! MetValLeuAspIleIleLysIlePheThrLeuValValHisLysLysLysPheLeuGly 26956 : ATGGTTTTGGATATAATCAAGATTTTCACCCTAGTCGTACACAAGAAAAAGTTTCTCGGT : 27015 97 : LeuIleAlaCysMetGlnGlnAsnPheTrpLysValAsnTyrAspTyrArgGluLysGlu : 116 ||||||! !! !||||||:!!||||||||| ! :!!||||||||| ! !|||!!.... LeuIleGluTyrMetGlnLysAsnPheTrpHisLeuAsnTyrAspGlnTyrGluAsnSer 27016 : CTGATTGAGTACATGCAGAAGAATTTTTGGCATTTGAACTACGATCAGTACGAGAATTCT : 27075 117 : IleLeuAsnAspCysArgLysThrCysIlePhePheValSerCysLeuThrThrMetVal : 136 :!!||| .!....!:!::!! !||||||!:!||||||!! |||::: ... ValLeuAlaGlnAlaLysArgMetCysIleTyrPheValCysValLeuSerPhePheSer 27076 : GTTTTGGCACAGGCGAAACGAATGTGCATTTACTTCGTGTGcgttttgtcatttttttct : 27135 137 : IleCysAlaMetIleSerTyrLeuIleIleProPheIle{A} >>>> Target Intr : 150 :!!:!::!!||||||:!!|||! |||.!!:!!{ } 172 bp GlnSerSerValLeuSerTyrIleIleArgProLeuVal{T}++ 27136 : caatctTCAGTTCTTTCCTATATCATAAGGCCACTTGTA{T}gt................ : 27180 151 : on 1 >>>> {la}LysGlyAsnAsnGluSerGluArgMetLeuProPheAsnMetTrp : 165 { !} |||!!.|||||||||!!:||| ! ! !|||:!!|||||| +-{yr}LeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrp 27181 : .........aa{AT}CTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGG : 27394 166 : IleAsnLeuProLeuSerLysThrProTyrTyrGluIleMetPheLeuIleGlnAlaMet : 185 .!!:!!|||||||||||| !|||||||||||||||||| ::!:!!||||||!.!:!: PheAspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeu 27395 : TTCGATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTA : 27454 186 : CysValTyr : 188 :!!!:! ProIlePhe 27455 : CCAATTTTC : 27465 vulgar: AmOr82 56 188 . KQ414828.1 26897 27465 + 276 M 93 279 S 0 1 5 0 2 I 0 168 3 0 2 S 1 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26898 27465 276 + . gene_id 6 ; sequence AmOr82 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 26898 27177 . + . KQ414828.1 exonerate:protein2genome:local exon 26898 27177 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 27178 27179 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 27178 27349 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 27348 27349 . + . intron_id 0 ; splice_site "aA" KQ414828.1 exonerate:protein2genome:local cds 27350 27465 . + . KQ414828.1 exonerate:protein2genome:local exon 27350 27465 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 26898 27465 276 + . alignment_id 6 ; Query AmOr82 ; Align 26898 57 279 ; Align 27352 151 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr82 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 235 Query range: 288 -> 389 Target range: 19341 -> 19644 289 : TyrGlnValLeuValAlaThrAlaSerPheAlaArgArgSerIlePheValPheLeuLeu : 308 ||| ! |||||| !|||!.!.!! !! ! !! !||| !||||||:!!|||! !:!! TyrTyrValLeuGlnAlaAsnThrProThrArgThrArgLeuIlePheIlePheHisIle 19342 : TATTACGTTTTACAGGCAAATACACCTACCAGAACCCGACTGATTTTCATCTTTCACATA : 19399 309 : AsnGlySerThrPheLeuLeuPheMetValThrTyrSerCysAsnGlyValIleGluHis : 328 ...!.!!!!! !! !! !|||.!.||| !!||||||||||||:!! !!:!!|||..!.!. GlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGlu 19400 : GGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGCTGCGACTGCATCATAAGAGAA : 19459 329 : SerAspAsnValAlaIleGlyAlaTyrSerAlaLeuTrpThrIleValProMetAspLys : 348 ||| !:!..!||| !.!!.!||||||!.!! !||||||:!!:!!||||||..! ! SerThrSerThrAlaGluAlaValTyrSerGlyProTrpThrLeuLeuProMetSerAla 19460 : AGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGACACTTTTACCAATGAGCGCA : 19519 349 : PheGlyArgMetLeuArgLysAspLeuIleMetValIleThrArgSerArgArgValCys : 368 !|||!:!|||:!!||||||||||||!!::!:||||||! !||||||!!! ! !||| AspGlyLysMetIleArgLysAspLeuMetLeuValIleMetArgSerSerValProCys 19520 : GACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCATGAGATCGAGCGTACCTTGT : 19579 369 : CysLeuThrAlaAsnGlyPhePheProValSerLeuGluSerTyrThrLysIleLeuSer : 388 ||||||||||||!..||||||||| !||||||||||||!!!|||||| !:!!:!! ! CysLeuThrAlaArgGlyPhePheValValSerLeuGluThrTyrThrGlyValIleVal 19580 : TGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAACGTACACAGGGGTAATCGTC : 19639 389 : Thr : 389 ||| Thr 19640 : ACC : 19644 vulgar: AmOr82 288 389 . KQ414828.1 19341 19644 + 235 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 19342 19644 235 + . gene_id 7 ; sequence AmOr82 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 19342 19644 . + . KQ414828.1 exonerate:protein2genome:local exon 19342 19644 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 19342 19644 235 + . alignment_id 7 ; Query AmOr82 ; Align 19342 289 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr82 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 198 Query range: 176 -> 293 Target range: 18018 -> 18381 177 : GluIleMetPheLeuIleGlnAlaMetCysValTyrTyrIleGlyValAlaSerPheCys : 196 ...|||::: :::... ..!:!!! !:!!|||:!!|||||||||::!! !|||||| ArgIleLeuLysIlePhe***ValLeuSerLeuTyrHisIleGlyValSerTyrPheCys 18019 : cgaattttgaaaattttttaggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgc : 18076 197 : PheAspAsnIlePheCysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeuGln : 216 |||||||||......||||||||| !:!!||| !||| !|||||||||:!!|||||| PheAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGln 18077 : ttcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAA : 18136 217 : TyrArg<-><-><->LeuThrLysLeuTyrAspValGluCysIleGluMetHisLysLys : 233 |||||| :!!||| ! ||| ! ||| ||| ||| ::: ||| TyrArgMetAlaAsnMetThrAspLeuLysAspLysGluArgLysGluArgAsnMetLys 18137 : TACCGAATGGCGAATATGACCGATTTAAAGGacaaagagaggaaagagagaaatatgaAG : 18196 234 : AspSerIle<->LeuAlaAsnArgValProLysPheTyrGluLysPheArgLysCysVal : 252 |||:!: ! !||| ! !!.! !!:!!! !|||.!. .!!!:! ! ! !:!! ThrSerValSerSerAlaCysPheAlaThrGluCysTyrAsnValLeuLysAspTyrIle 18197 : ACAAGTGTGAGTTCGGCGTGCTTTGCAACAGAATGTTACAACGTTCTCAAAGATTATATC : 18256 253 : GlnHisHisGlnAlaLeuIleAspPheTyrGlnAsnLeuGluAsnValTyrThrArgIle : 272 ::!!!.|||||| !||||||! !!:!! !.!.!!.||||||!!.|||!:!!.!! !||| ArgGlnHisGlnAsnLeuIleAlaTyrCysAsnLysLeuGluLysValPheAsnIleIle 18257 : AGACAGCATCAGAACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGTTCAATATCATT : 18316 273 : AlaPheGlyGluMetLeuValTyrSerIleLeuIleCysLeuPheGlyTyrGlnValLeu : 292 !.!.!.|||:!!:!!|||:!!!:!|||!!:|||||||||||| !|||!:!|||:!!||| ValLeuGlyGlnLeuLeuMetPheSerMetLeuIleCysLeuAspGlyPheGlnIleLeu 18317 : GTTCTGGGGCAATTGTTAATGTTCAGCATGTTGATCTGTCTCGATGGATTTCAGATACTT : 18376 293 : Val : 293 :!! Met 18377 : ATG : 18381 vulgar: AmOr82 176 293 . KQ414828.1 18018 18381 + 198 M 42 126 G 0 9 M 18 54 G 0 3 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 18019 18381 198 + . gene_id 8 ; sequence AmOr82 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 18019 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18019 18381 . + . insertions 12 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 18019 18381 198 + . alignment_id 8 ; Query AmOr82 ; Align 18019 177 126 ; Align 18154 219 54 ; Align 18211 237 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr82 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 193 Query range: 314 -> 386 Target range: 28568 -> 28784 315 : LeuPheMetValThrTyrSerCysAsnGlyValIleGluHisSerAspAsnValAlaIle : 334 |||!::||| !!||||||||||||:!! !!:!!! ! !.!.||| |||:!!||| ! LeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGlu 28569 : CTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAA : 28626 335 : GlyAlaTyrSerAlaLeuTrpThrIleValProMetAspLysPheGlyArgMetLeuArg : 354 ..!!.!|||:!!!.!! !|||! !! !:!!||||||||||||||||||::::::|||||| SerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArg 28627 : TCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaactgCTAAGA : 28686 355 : LysAspLeuIleMetValIleThrArgSerArgArgValCysCysLeuThrAlaAsnGly : 374 ||||||||| !:!!:!!||| !|||:!!|||||| !! !! !||||||||| !||| LysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThrAlaCysGly 28687 : AAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGA : 28746 375 : PhePheProValSerLeuGluSerTyrThrLysIle : 386 |||||| !!:!!|||||||||!!!!:!||||||:!! PhePheSerIleSerLeuGluThrPheThrLysVal 28747 : TTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 28784 vulgar: AmOr82 314 386 . KQ414828.1 28568 28784 + 193 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28569 28784 193 + . gene_id 9 ; sequence AmOr82 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28569 28784 . + . KQ414828.1 exonerate:protein2genome:local exon 28569 28784 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28569 28784 193 + . alignment_id 9 ; Query AmOr82 ; Align 28569 315 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr82 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 56 -> 151 Target range: 31943 -> 32228 57 : LeuTyrPheThrLeuLeuTyrHisGlyAspIleLeuTyrSerIleThrAsnAsnIleThr : 76 |||||| ...|||::: ! ! !:!!|||! ! ! !|||!:!|||.!! LeuTyrVal***PheLeuPheLeuGlnValCysMetTyrMetAlaCysAsnSerIleAla 31944 : TTATACGtctaatttctatttcttcagGTTTGCATGTACATGGCATGCAACAGTATAGCC : 32001 77 : MetIleMetAlaLeuIleLysIleSerIleIleIleIleTyrLysGlyLysPheLeuAsn : 96 :!!:!!:!!! !:!!|||||||||! !:!!:!!:!!:!! ||| !|||||||||..! LeuValLeuAspIleIleLysIlePheValLeuValValArgLysLysLysPheLeuGly 32002 : CTGGTTTTGGATATAATCAAGATTTTCGTCCTAGTCGTACGGAAGAAAAAGTTTCTCGGT : 32061 97 : LeuIleAlaCysMetGlnGlnAsnPheTrpLysValAsnTyrAspTyrArgGluLysGlu : 116 ||||||! !! !||||||:::||||||::: :::||||||||| ! !|||!!.... LeuIleGluTyrMetGlnLysAsnPhePheHisLeuAsnTyrAspGlnAspGluAsnSer 32062 : CTGATTGAGTACATgcagaagaatttctttcatttgaaCTACGATCAGGACGAGAATTCT : 32121 117 : IleLeuAsnAspCysArgLysThrCysIlePhePheValSerCysLeuThrThrMetVal : 136 |||:!! !!...!:!::!|||||||||!:!||||||!!! !!!!:!! ! ! IleIleAlaHisAlaLysArgThrCysIleTyrPheValCysValPheSerPheCysSer 32122 : ATTATCGCACACGCGAAACGAACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTTCT : 32181 137 : IleCysAlaMetIleSerTyrLeuIleIleProPheIleAlaLys : 151 !! !.!!:!:.!!||||||:!!|||! ||||||:!!..!||| GlnSerThrValPheSerTyrIleIleArgProPheValCysLys 32182 : CAATCTACAGTTTTTTCCTATATAATAAGGCCATTTGTATGTAAG : 32228 vulgar: AmOr82 56 151 . KQ414828.1 31943 32228 + 180 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31944 32228 180 + . gene_id 10 ; sequence AmOr82 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 31944 32228 . + . KQ414828.1 exonerate:protein2genome:local exon 31944 32228 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31944 32228 180 + . alignment_id 10 ; Query AmOr82 ; Align 31944 57 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr82 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 151 -> 185 Target range: 17833 -> 17935 152 : GlyAsnAsnGluSerGluArgMetLeuProPheAsnMetTrpIleAsnLeuProLeuSer : 171 |||...|||||||||||||||!!:||||||||||||||||||:!!||||||||||||||| GlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpValAsnLeuProLeuSer 17834 : ggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTCAACTTGCCATTATCA : 17891 172 : LysThrProTyrTyrGluIleMetPheLeuIleGlnAlaMet : 185 ! !|||||||||||||||||| ||| :::|||!.!::: MetThrProTyrTyrGluIleThrPheSerLeuGlnValLeu 17892 : ATGACGCCATATTACgaaataactttttcattaCAGGTAttg : 17935 vulgar: AmOr82 151 185 . KQ414828.1 17833 17935 + 145 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17834 17935 145 + . gene_id 11 ; sequence AmOr82 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 17834 17935 . + . KQ414828.1 exonerate:protein2genome:local exon 17834 17935 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17834 17935 145 + . alignment_id 11 ; Query AmOr82 ; Align 17834 152 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr82 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 151 -> 188 Target range: 32401 -> 32512 152 : GlyAsnAsnGluSerGluArgMetLeuProPheAsnMetTrpIleAsnLeuProLeuSer : 171 |||!!.|||||||||!!:||| ! ! !!:!:!!||||||:!!:!!|||||||||||| GlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuProLeuSer 32402 : GGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCATTATCC : 32459 172 : LysThrProTyrTyrGluIleMetPheLeuIleGlnAlaMetCysValTyr : 188 !|||||||||||||||||| ::!:!!||||||!.!:!: :!!!:! ValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuProIlePhe 32460 : GTAACAccatattatgaaattacttACATAATACAGGTATTACCAATTTTC : 32512 vulgar: AmOr82 151 188 . KQ414828.1 32401 32512 + 113 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32402 32512 113 + . gene_id 12 ; sequence AmOr82 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 32402 32512 . + . KQ414828.1 exonerate:protein2genome:local exon 32402 32512 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32402 32512 113 + . alignment_id 12 ; Query AmOr82 ; Align 32402 152 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr80 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1249 Query range: 0 -> 404 Target range: 7890 -> 13158 1 : MetGlnThrGluSerGlnLeuAspIleSerIleAsnLeuSerThrPhePheLeuLysAsn : 20 ||||||||||||!.!.!.! !|||||||||||||||||||||! !|||||||||:::||| MetGlnThrGluLysAspSerAspIleSerIleAsnLeuSerLysPhePheLeuArgAsn 7891 : ATGCAAACGGAGAAGGATTCGGACATATCGATCAACTTGTCGAAATTCTTCTTGCGCAAT : 7948 21 : ValGlyIleTrpMetSerAspAsnProAsnGluGlnArgArgIleLysMetLeuPheLeu : 40 ||||||:!:|||! !:!!!!:|||! ! |||.!.|||!:!! ||| !||| !! ! ValGlyLeuTrpArgAlaGluAsnHisAlaGluAsnArgLysArgLysAlaLeuValAla 7949 : GTCGGCCTGTGGAGGGCTGAGAATCACGCGGAGAATCGTAAAAGGAAAGCGTTGGTCGCC : 8008 41 : TyrThrIleTrpAsnLeuLeuPheGlyThrValValAsnSerArgAspLeuTyrPheThr : 60 |||||||||||||||:!!!!!!!.!.!! !||||||.!.!!!||||||:!!||||||||| TyrThrIleTrpAsnMetPheLeuAlaIleValValGluThrArgAspMetTyrPheThr 8009 : TACACGATTTGGAACATGTTTTTGGCCATAGTGGTTGAAACGAGAGATATGTATTTCACC : 8068 61 : LeuLeuTyrAspGly >>>> Target Intron 1 >>>> AspIleLeuTyrValT : 71 ! !!!!||| ! ||| 796 bp |||||||||||||||! TrpPheTyrLysGly++ ++AspIleLeuTyrValS 8069 : TGGTTCTATAAAGGCgt.........................agGATATTCTTTACGTTA : 8897 72 : hrThrAsnAsnIleThrMetIleMetGlyMetValLysIleCysIleIleLeuIleTyrL : 91 :!|||||| :!:!:!:!!|||:!: !! !:!!|||:!! !:!!:!!||||||:!!| erThrAsnLeuLeuSerValIleLeuThrThrIleLysLeuThrValValLeuIleHisL 8898 : GTACCAACTTACTGAGCGTGATCTTAACTACGATCAAGCTAACTGTCGTACTAATACACA : 8957 92 : ysLysLysPheLeuAsnLeuIleValTyrMetGlnGlnAsnPheTrpAsnValAsnTyrA : 111 || !:!!|||:!!!:!||||||! !|||||| ! :!!:!!||||||||||||:!!|||| ysValGluPheMetSerLeuIleAspTyrMetTyrGluHisPheTrpAsnValAspTyrA 8958 : AAGTGGAATTCATGAGTCTGATTGATTACATGTACGAACATTTCTGGAACGTGGATTACG : 9017 112 : spHisArgGluLysGlnIleLeuAspAspCysArgLysThrCysIlePhePheValSerC : 131 ||! !!.!||||||::!|||:!:|||:::|||:::||||||||||||.!!|||..!||| spLeuHisGluLysArgIleMetAspAsnCysLysLysThrCysIleIlePheThrSerS 9018 : ATCTTCACGAGAAAAGAATTATggataattgtaaaaaaactTGCATCATCTTCACTTCAA : 9077 132 : ysValThrIleMetAlaIleCysAlaMetIleCysTyrIleMetIleProPheIle{A} : 150 !!||||||! !!!:!.!|||||||||!!:|||! !|||||| !! !|||||||||{ } erValThrThrIleGlyIleCysAlaIleIleSerTyrIleAlaThrProPheIle{M}+ 9078 : GCGTCACTACCATTGGCATATGCGCTATAATATCTTACATAGCGACACCGTTTATC{A}g : 9135 151 : >>>> Target Intron 2 >>>> {la}GlnSerGlySerAsnGluSerGluArgM : 160 192 bp { !}!!.||| !||||||:!!||||||||| + ++{et}HisSerGlnSerAsnLysSerGluArgA 9136 : t.........................ag{TG}CACAGTCAAAGCAACAAATCTGAAAGAG : 9356 161 : etLeuProPheAsnMetTrpIleAsnLeuProIleSerArgThrProTyrTyrGlnIleT : 180 !!!!! !|||:!!||||||:!!|||||||||:!:!!! !:!!|||||||||:!! !! laPheLeuPheAspMetTrpLeuAsnLeuProLeuThrValSerProTyrTyrGluGlyM 9357 : CGTTTCTGTTCGACATGTGGCTCAATTTACCTCTGACTGTTTCGCCTTACTACGAAGGAA : 9416 181 : hrPheLeuIleGln >>>> Target Intron 3 >>>> AlaThrCysValTyrTy : 190 !!!. !:!!||| 1401 bp !:!! ! :!!|||!: etLeuAlaValGln++ ++IleSerGlyLeuTyrPh 9417 : TGTTGGCTGTACAGgt.........................agATTTCAGGACTGTATTT : 10847 191 : rValGlyIleSerTyrPheCysPheAspAsnIlePheCysIleMetAlaValHisLeuAl : 210 !..!||||||!!!|||||||||||||||||||||||||||||||||::!|||||||||:: eThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerValHisLeuSe 10848 : CACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTGCATTTGAG : 10907 211 : aGlyGlnPheArgIleLeuArgTyrArgPheThrLysLeuCysAspMetGluTyrGlyIl : 230 !||||||||||||||||||!:!||||||!!.|||||||||! !|||:!::!!||| !|| rGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGlnTyrGlnIl 10908 : TGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAATATCAGAT : 10967 231 : eLysGlu<->AsnSerGlnSerIleLeuSerLysGlnMetHisLysPheTyrGluLysPh : 249 |!..||| ||| :::|||:!!|||..! ! ! !.!!:!! !||||||||||| eSerGluLysAsnMetGluSerValLeuGluAspCysThrArgArgSerTyrGluLysPh 10968 : AAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGTAGATCTTACGAGAAATT : 11027 250 : eArgLysCysValGlnHisHisGlnAlaLeuIleAspPheTyrGlnAsnLeuGluAsnVa : 269 |!:!!..! !|||!:!!!.||||||.!!|||||||||!:!|||:!!!!.||||||:!!|| eLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLysLeuGluHisVa 11028 : TAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAGCTTGAACACGT : 11087 270 : lTyrThrMetIleThrPheGlyGlnValLeuValPheSerValLeuIleCysLeuPheGl : 289 |||||||! |||! !.!!||||||||||||:!!|||||||||||||||||||||||||| lTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIleCysLeuPheGl 11088 : TTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATTTGCCTCTTTGG : 11147 290 : yTyrGlnValLeuVal >>>> Target Intron 4 >>>> AlaThrIleSerPhe : 299 |||||||:!!|||:!! 1305 bp |||!.!! !|||.!! yTyrGlnIleLeuLeu++ ++AlaAsnThrSerLeu 11148 : TTATCAGATATTATTGgt.........................agGCTAATACTTCTCTT : 12482 300 : AlaArgArgPheIlePheValPheMetLeuAsnGlySerMetPheLeuLeuPheMetVal : 319 ||||||||| !||||||:!!|||:!::!! !|||:!!||| !!|||||||||||| !! AlaArgArgSerIlePheMetPheLeuIleCysGlyAlaMetValLeuLeuPheMetPhe 12483 : GCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTTTTATTGTTTATGTTC : 12542 320 : ThrTyrSerCysAsnGlyValIleGluHisSerAspAsnValAlaValGlyAlaTyrSer : 339 ||||||||||||||| !|||||||||!!.|||||||||:!!||| !!!.!||||||||| ThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAlaPheAlaAlaTyrSer 12543 : ACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCTTTTGCGGCGTATTCG : 12602 340 : AlaLeuTrpThrIleMetProMetAspLysPheGlyLysIleLeuArgLysAspLeuIle : 359 |||||||||||| !|||||||||:!!||| !||||||! |||||| ! ||||||||| AlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeuArgHisAspLeuIle 12603 : GCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTACGGCATGATTTGATA : 12662 360 : IleValIleArgArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePheProVal : 379 !!:|||||| !!|||||||||||||||||||||||||||||||||||||||||||||||| MetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePheProVal 12663 : ATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATGGATTTTTCCCTGTG : 12722 380 : SerLeuGluThrTyrThrLys >>>> Target Intron 5 >>>> IleLeuSerT : 390 ||||||||||||||||||! ! 359 bp |||||||||| SerLeuGluThrTyrThrThr++ ++IleLeuSerT 12723 : TCCTTAGAAACTTATACTACGgt.........................agattttgAGTA : 13114 391 : hrAlaLeuSerTyrPheThrLeuLeuSerAsnArgIleGluAsn : 404 ||||| !||||||||||||||||||!!!|||!.!:!!|||:!! hrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnValGluAsp 13115 : CCGCGGCGTCGTACTTCACATTATTGAGAAATAACGTAGAAGAT : 13158 vulgar: AmOr80 0 404 . KQ414828.1 7890 13158 + 1249 M 65 195 5 0 2 I 0 792 3 0 2 M 84 252 S 0 1 5 0 2 I 0 188 3 0 2 S 1 2 M 34 102 5 0 2 I 0 1397 3 0 2 M 48 144 G 0 3 M 62 186 5 0 2 I 0 1301 3 0 2 M 92 276 5 0 2 I 0 355 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 7891 13158 1249 + . gene_id 1 ; sequence AmOr80 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 7891 8085 . + . KQ414828.1 exonerate:protein2genome:local exon 7891 8085 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 8086 8087 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 8086 8881 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 8880 8881 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 8882 9134 . + . KQ414828.1 exonerate:protein2genome:local exon 8882 9134 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 9135 9136 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 9135 9326 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 9325 9326 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 9327 9430 . + . KQ414828.1 exonerate:protein2genome:local exon 9327 9430 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 9431 9432 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 9431 10831 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 10830 10831 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 10832 11164 . + . KQ414828.1 exonerate:protein2genome:local exon 10832 11164 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 11165 11166 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 11165 12469 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 12468 12469 . + . intron_id 3 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 12470 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12745 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13104 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 13103 13104 . + . intron_id 4 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 13105 13158 . + . KQ414828.1 exonerate:protein2genome:local exon 13105 13158 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 7891 13158 1249 + . alignment_id 1 ; Query AmOr80 ; Align 7891 1 195 ; Align 8882 66 252 ; Align 9329 151 102 ; Align 10832 185 144 ; Align 10979 233 186 ; Align 12470 295 276 ; Align 13105 387 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr80 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 770 Query range: 60 -> 405 Target range: 21876 -> 24196 61 : LeuLeuTyrAspGlyAspIleLeuTyrValThrThrAsnAsnIleThrMetIleMetGly : 80 :::|||::: ! !:!!|||:!!.!! !|||!:!:!!.!!:!!:!!:!!! ! IleLeuPhePheGlnValCysMetTyrMetAlaCysAsnSerLeuAlaLeuValLeuAsp 21877 : attttgttttttcaggTTTGCATGTACATGGCATGCAACAGTTTAGCCCTGGTTTTGGAT : 21934 81 : MetValLysIleCysIleIleLeuIleTyrLysLysLysPheLeuAsnLeuIleValTyr : 100 !!::!!||||||! !:!!:!!|||:!! |||||||||||||||..!||||||! !||| IleIleLysIlePheValLeuLeuValArgLysLysLysPheLeuGlyLeuIleGluTyr 21935 : ATAATCAAGATTTTCGTCCTACTCGTACGGAAGAAAAAGTTTCTCGGTCTGATTGAGTAC : 21994 101 : MetGlnGlnAsnPheTrpAsnValAsnTyrAspHisArgGluLysGlnIleLeuAspAsp : 120 ||||||:!!|||||||||:!!:!!|||||||||!!. !|||!!....|||:!!! !! MetGlnLysAsnPheTrpHisLeuAsnTyrAspGlnAspGluAsnSerIleIleAlaHis 21995 : ATGCAGAAGAATTTTTGGCATTTGAACTACGACCAGGACGAGAATTCTATTATCGCACAC : 22054 121 : CysArgLysThrCysIlePhePheValSerCysValThrIleMetAlaIleCysAlaMet : 140 ...!:!::!|||||||||!:!||||||!!! ! !!:!!.!! :!! !! !.!!:!: AlaLysArgThrCysIleTyrPheValCysValPheSerPheCysSerGlnSerThrVal 22055 : GCGAAACGAACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTTCTCAATCTACAGTT : 22114 141 : IleCysTyrIleMetIleProPheIle{A} >>>> Target Intron 1 >>>> { : 150 .!!! !||||||!!:! ||||||:!!{:} 170 bp { PheSerTyrIleIleArgProPheVal{S}++ ++{ 22115 : TTTTCCTATATAATAAGGCCATTTGTA{T}gt.........................ag{ : 22315 151 : la}GlnSerGlySerAsnGluSerGluArgMetLeuProPheAsnMetTrpIleAsnLeu : 169 !!}.!. !|||!.!|||||||||!!:||| ! ! !!:!:!!||||||:!!:!!||| er}AsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeu 22316 : ca}AATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTA : 22371 170 : ProIleSerArgThrProTyrTyrGlnIleThrPheLeuIleGln >>>> Target I : 185 |||:!!||| !||||||||||||:::||||||::!:!!|||||| 307 ProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGln++ 22372 : CCATTATCCGTAACAccatattatgaaattacttACATAATACAGgt............. : 22421 186 : ntron 2 >>>> AlaThrCysValTyrTyrValGlyIleSerTyrPheCysPheAspA : 200 bp ||| !! !|||||| ! |||.!! !!!|||.!!||||||||| ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspI 22422 : ............agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgata : 22771 201 : snIlePheCysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeuArgTyrArgP : 220 |||||| |||:::...:!!|||:!!|||||||||||||||||||||!:!||||||. leIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgI 22772 : tcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAA : 22831 221 : heThrLysLeuCysAspMetGluTyrGlyIleLysGluAsn<->SerGlnSerIleLeuS : 239 !!.!!!!.:!!! ! !:!:... ! !:!:|||...!:! !:!! !|||! ! !. leAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSerThrAspG 22832 : TTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATG : 22891 240 : erLysGlnMetHisLysPheTyrGluLysPheArgLysCysValGlnHisHisGlnAlaL : 259 .! ! ! .!.|||! !||| ||||||!:!!!.|||:!!|||!!.|||||||||| luLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaL 22892 : AATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCAC : 22951 260 : euIleAspPheTyrGlnAsnLeuGluAsnValTyrThrMetIleThrPheGlyGlnValL : 279 |||||!!:|||! ! !!..||||||.!.|||!:!|||:!:|||..!.!!|||||||||| euIleGluPheCysAlaThrLeuGluGluValPheThrValIleValLeuGlyGlnValL 22952 : TAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCC : 23011 280 : euValPheSerValLeuIleCysLeuPheGlyTyrGlnValLeuVal >>>> Target : 295 ||:!!! !|||:!!|||||||||!!!.!!|||||||||||||||:!! 4 euMetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeu++ 23012 : TAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGgt........... : 23061 296 : Intron 3 >>>> AlaThrIleSerPheAlaArgArgPheIlePheValPheMetLe : 309 92 bp !! !:!!||||||! ! !||| !! !|||!.!! !.!.|| ++IleLysLeuSerPheGluSerArgValAlaPheAlaCysPheLe 23062 : ..............agATAAAGTTATCATTTGAATCGCGCGTTGCTTTCGCGTGCTTCTT : 23593 310 : uAsnGlySerMetPheLeuLeuPheMetValThrTyrSerCysAsnGlyValIleGluHi : 329 |! !.!!||| !! !|||!::||| !!||||||||||||:!! !!:!!! ! !.! uMetMetGlyMetSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGl 23594 : GATGATGGGCATGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCATAACAACAGA : 23653 330 : sSerAspAsnValAlaValGlyAlaTyrSerAlaLeuTrpThrIleMetProMetAspLy : 349 .||| |||:!!|||! !..!!.!|||:!!!.!! !|||! !! !:!:||||||||||| uSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLy 23654 : AAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATGGACAA : 23713 350 : sPheGlyLysIleLeuArgLysAspLeuIleIleValIleArgArgSerArgArgValCy : 369 ||||||||||:!:|||||||||!!:||| !!!::!!||| !|||:!!|||||| !! sPheGlyLysLeuLeuArgLysGluLeuGlnMetLeuIleLeuArgAlaArgArgProSe 23714 : ATTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGGGCGAGACGACCTTC : 23773 370 : sCysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrLys >>>> T : 387 !..!||||||||| !||||||||| !!:!!||||||||||||!:!|||||| rAlaLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 23774 : CGCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt...... : 23829 388 : arget Intron 4 >>>> IleLeuSerThrAlaLeuSerTyrPheThrLeuLeuSer : 399 313 bp |||:!!||||||:!!:!!||||||||||||||||||!.! ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLys 23830 : ...................agATCATGAGTACATCAATGTCGTATTTCACATTATTAAAA : 24176 400 : AsnArgIleGluAsnSer : 405 .!. !!||||||:!!!!! GlnCysIleGluAspThr 24177 : CAATGTATCGAGGACACG : 24196 vulgar: AmOr80 60 405 . KQ414828.1 21876 24196 + 770 M 89 267 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 34 102 5 0 2 I 0 303 3 0 2 M 49 147 G 0 3 M 61 183 5 0 2 I 0 488 3 0 2 M 92 276 5 0 2 I 0 309 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21877 24196 770 + . gene_id 2 ; sequence AmOr80 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 21877 22144 . + . KQ414828.1 exonerate:protein2genome:local exon 21877 22144 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22145 22146 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22145 22314 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22313 22314 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 22315 22418 . + . KQ414828.1 exonerate:protein2genome:local exon 22315 22418 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22419 22420 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22419 22725 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 23058 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23059 23060 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23059 23550 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 23549 23550 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 23551 23826 . + . KQ414828.1 exonerate:protein2genome:local exon 23551 23826 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23827 23828 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23827 24139 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 24138 24139 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 24140 24196 . + . KQ414828.1 exonerate:protein2genome:local exon 24140 24196 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21877 24196 770 + . alignment_id 2 ; Query AmOr80 ; Align 21877 61 267 ; Align 22317 151 102 ; Align 22726 185 147 ; Align 22876 234 183 ; Align 23551 295 276 ; Align 24140 387 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr80 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 717 Query range: 56 -> 405 Target range: 37008 -> 39220 57 : LeuTyrPheThrLeuLeuTyrAspGlyAspIleLeuTyrValThrThrAsnAsnIleThr : 76 |||||| ...|||::: !! ! !:!!|||:!!.!! !|||..!:!!.!! LeuTyrVal***PheLeuPheLeuGlnValCysMetTyrMetAlaGlyAsnGlyLeuAla 37009 : ttatacgtctaatttctatttctacaGGTTTGCATGTACATGGCAGGCAACGGTTTAGCC : 37066 77 : MetIleMetGlyMetValLysIleCysIleIleLeuIleTyrLysLysLysPheLeuAsn : 96 |||:!!:!!! !!!::!!||||||! ! !:!!:!!:!!:!!|||||||||||||||..! MetValLeuAspIleIleLysIlePheSerLeuValValHisLysLysLysPheLeuGly 37067 : ATGGTTTTGGATATAATCAAGATTTTCTCCCTAGTCGTACACAAGAAAAAGTTTCTCGGT : 37126 97 : LeuIleValTyrMetGlnGlnAsnPheTrpAsnValAsnTyrAspHisArgGluLysGln : 116 ||||||! !|||||||||:!!||||||! !:!!:!!|||||||||!!. !|||!!.... LeuIleGluTyrMetGlnLysAsnPheLeuHisLeuAsnTyrAspGlnTyrGluAsnSer 37127 : CTGATTGAGTACATGCAGAAGAATTTCTTGCATTTGAACTACGATCAGTACGAGAATTCT : 37186 117 : IleLeuAspAspCysArgLysThrCysIlePhePheValSerCysValThrIleMetAla : 136 :!!:!!! .!....!:!::!! !||||||!:!||||||!! ::::::......::: ValIleAlaGlnAlaLysArgMetCysIleTyrPheValCysValLeuSerPhePheSer 37187 : GTTATCGCACAGGCGAAACGAATGTGCATTTACTTCGTGTGcgttttgtcatttttttct : 37246 137 : IleCysAlaMetIleCysTyrIleMetIleProPheIle{A} >>>> Target Intr : 150 :!!:!::!!! !||||||:!:! |||.!!:!!{:} 169 bp GlnSerSerValLeuSerTyrIleValArgProLeuVal{S}++ 37247 : caatctTCAGTTCTTTCCTATATAGTAAGGCCACTTGTA{T}gt................ : 37291 151 : on 1 >>>> {la}GlnSerGlySerAsnGluSerGluArgMetLeuProPheAsnMet : 165 {!!}.!. !|||!.!|||||||||!!:||| ! ! !!:!:!!||| ++{er}AsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMet 37292 : .........ag{ca}AATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATG : 37502 166 : TrpIleAsnLeuProIleSerArgThrProTyrTyrGlnIleThrPheLeuIleGln > : 185 |||:!!:!!||||||:!!|||! !||||||||||||:::||||||::!:!!|||||| TrpLeuAspLeuProLeuSerIleThrProTyrTyrGluIleThrTyrIleIleGln++ 37503 : TGGCTCGATCTACCATTATCCATAACAccatattatgaaattacttACATAATACAGgt. : 37564 186 : >>> Target Intron 2 >>>> AlaThrCysValTyrTyrValGlyIleSerTyrP : 196 307 bp ||| !! !|||||| ! |||.!! !!!|||. ++AlaLeuSerValTyrGlnValSerAlaCysTyrL 37565 : ........................agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACC : 37902 197 : heCysPheAspAsnIlePheCysIleMetAlaValHisLeuAlaGlyGlnPheArgIleL : 216 !!||||||||| |||||| |||:::...:!!|||:!!||||||||||||||||||| euCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleL 37903 : TTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATAC : 37962 217 : euArgTyrArgPheThrLysLeuCysAspMetGluTyrGlyIleLysGluAsn<->SerG : 235 ||!:!||||||.!!.!!!!.:!!! ! !:!:... ! !:!:|||...!:! !:!! euGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluAsnP 37963 : TACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATC : 38022 236 : lnSerIleLeuSerLysGlnMetHisLysPheTyrGluLysPheArgLysCysValGlnH : 255 !|||! ! !..! ! ! .!.|||! !||| ||||||!:!!!.|||:!!|||! roSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnG 38023 : CAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAAC : 38082 256 : isHisGlnAlaLeuIleAspPheTyrGlnAsnLeuGluAsnValTyrThrMetIleThrP : 275 !.|||||||||||||||!!:|||! ! !!..||||||.!.|||!:!|||:!:|||.!!. lnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleAlaL 38083 : AGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCAC : 38142 276 : heGlyGlnValLeuValPheSerValLeuIleCysLeuPheGlyTyrGlnValLeuValA : 295 !!||||||||||||:!!||||||:!!|||||||||!!! !!! !||||||!.!|||:!!! euGlyGlnValLeuMetPheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeuV 38143 : TCGGACAAGTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGG : 38202 296 : laThrIle >>>> Target Intron 3 >>>> SerPheAlaArgArgPheIlePh : 305 .!!:!||| 280 bp :::||| !::! !! alSerIle++ ++AsnPheTyrTyrLeuTrpAsn** 38203 : TGAGTATCgt.........................agaatttttattacctgTGGAATTA : 38512 306 : eValPheMetLeuAsnGlySerMetPheLeuLeuPheMetValThrTyrSerCysAsnGl : 325 :!!||| !! !.!!:!! !! !|||!::||| !!||||||||||||:!! ! *MetPheAlaThrMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCy 38513 : AATGTTCGCAACGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTG : 38572 326 : yValIleGluHisSerAspAsnValAlaValGlyAlaTyrSerAlaLeuTrpThrIleMe : 345 !:!!! ! !.!.||| |||:!!|||! !..!!.!|||:!!!.!! !|||! !! !:! sIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLe 38573 : CATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTT : 38632 346 : tProMetAspLysPheGlyLysIleLeuArgLysAspLeuIleIleValIleArgArgSe : 365 :|||||||||||||||||||||:::||||||||||||||| !:!::!!||| !|||:! uProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAl 38633 : ACCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGC : 38692 366 : rArgArgValCysCysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrTh : 385 !|||||| !! !! !||||||||| !||||||||| !!:!!||||||||||||!:!|| aArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheTh 38693 : GAGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTAC : 38752 386 : rLys >>>> Target Intron 4 >>>> IleLeuSerThrAlaLeuSerTyrPhe : 395 |||| 406 bp |||:!!||||||:!!:!!||||||||| rLys++ ++IleMetSerThrSerMetSerTyrPhe 38753 : TAAGgt.........................agATCATGAGTACATCAATGTCGTATTTC : 39188 396 : ThrLeuLeuSerAsnArgIleGluAsnSer : 405 |||||||||!.!.!.!!!|||!!::!!!!! ThrLeuLeuLysGlnSerIleAspAspThr 39189 : ACATTATTAAAACAAAGTATCGACGACACG : 39220 vulgar: AmOr80 56 405 . KQ414828.1 37008 39220 + 717 M 93 279 S 0 1 5 0 2 I 0 165 3 0 2 S 1 2 M 34 102 5 0 2 I 0 303 3 0 2 M 49 147 G 0 3 M 64 192 5 0 2 I 0 276 3 0 2 M 89 267 5 0 2 I 0 402 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37009 39220 717 + . gene_id 3 ; sequence AmOr80 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37009 37288 . + . KQ414828.1 exonerate:protein2genome:local exon 37009 37288 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37289 37290 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37289 37457 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37456 37457 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 37458 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37458 37561 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 38210 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 38210 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 38211 38212 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 38211 38490 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 38489 38490 . + . intron_id 2 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 38491 38757 . + . KQ414828.1 exonerate:protein2genome:local exon 38491 38757 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 38758 38759 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 38758 39163 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 39162 39163 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 39164 39220 . + . KQ414828.1 exonerate:protein2genome:local exon 39164 39220 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37009 39220 717 + . alignment_id 3 ; Query AmOr80 ; Align 37009 57 279 ; Align 37460 151 102 ; Align 37869 185 147 ; Align 38019 234 192 ; Align 38491 298 267 ; Align 39164 387 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr80 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 589 Query range: 147 -> 406 Target range: 2873 -> 6477 148 : PheIleAlaGlnSerGlySerAsnGluSerGluArgMetLeuProPheAsnMetTrpIleAs : 168 ||| !|||... |||...|||||||||!!:|||:!:||| ! !!|||.!.||||||:! PheSerAlaSerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAs 2874 : TTCTCAGCAAgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGA : 2934 169 : nLeuProIleSerArgThrProTyrTyrGlnIleThrPheLeuIleGln >>>> Target : 185 !|||||||||!!!! !||||||||||||:::||| ||| |||||| 4 pLeuProIleThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2935 : CCTGCCGATAACCATCACACCATactatgaaatattatttacgaTACAGgt........... : 2987 186 : Intron 1 >>>> AlaThrCysValTyrTyrValGlyIleSerTyrPheCysPheAspA : 200 06 bp ! ! !:!! |||||| !!|||||||||.!!|||.!!|||| ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspA 2988 : ..............agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACA : 3436 201 : snIlePheCysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeuArgTyrArgPhe : 220 ||.!!.!.|||!!:!!: !:!!||| !||| !|||||||||||||||!:!||||||.!. snPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeu 3437 : ATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTG : 3496 221 : ThrLysLeuCysAspMetGluTyrGlyIleLysGluAsnSerGlnSerIleLeuSerLysGl : 241 :!!!!.:!!|||! ! .!. ! !!! ::: |||:::... ! !|||!!... SerAsnValCysGlyAlaAsnGluArgSerAspLysIleSerLysLysThrProSerAsnSe 3497 : TCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTC : 3559 242 : nMetHisLysPheTyrGluLysPheArgLysCysValGlnHisHisGlnAlaLeuIleAspP : 262 ! !!:!!! !|||! ||||||!:!!!.|||:!!|||!!.|||||||||||||||!!:! r---AspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluT 3560 : G---GACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAAT : 3619 263 : heTyrGlnAsnLeuGluAsnValTyrThrMetIleThrPheGlyGlnValLeuValPheSer : 282 :!! !.!.!!.|||:!!.!.|||!:! !!!:.!!..!.!!!.!|||||||||:!!|||||| yrCysAsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSer 3620 : ACTGTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGT : 3679 283 : ValLeuIleCysLeuPheGlyTyrGlnValLeu >>>> Target Intron 2 >>>> : 294 :!!|||!!:|||||| !|||||| !|||:!! 457 bp LeuLeuMetCysLeuAspGlyTyrLeuValMet++ ++ 3680 : TTGTTAATGTGCCTCGATGGATATTTGGTGATGgt.........................ag : 4170 295 : ValAlaThrIleSerPheAlaArgArgPheIlePheValPheMetLeuAsnGlySerMetPh : 314 ! !! !||| !!.!! !!:!|||.!!! !|||:!!||| |||!..|||!!!:!!! GluAspThr---ProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCy 4171 : GAAGATACT---CCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTG : 4229 315 : eLeuLeuPheMetValThrTyrSerCysAsnGlyValIleGluHisSerAspAsnValAlaV : 335 !! !|||!!.||| !!||||||||||||:!! !!:!!|||..!.!.||| ||||||||| sGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaA 4230 : CCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCA : 4292 336 : alGlyAlaTyrSerAlaLeuTrpThrIleMetProMetAspLysPheGlyLysIleLeuArg : 355 !!.! !|||..!..!! !|||! ! !:!!|||||||||!:!! !|||::!!!:|||||| snAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArg 4293 : ATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGA : 4352 356 : LysAspLeuIleIleValIleArgArgSerArgArgValCysCysLeuThrAlaAsnGlyPh : 376 |||||||||! !.!!|||||| !!||||||||| ! !||||||||||||||| !||||| LysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPh 4353 : AAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATT : 4415 377 : ePheProValSerLeuGluThrTyrThrLys >>>> Target Intron 3 >>>> Il : 387 ||||||||||||||||||||||||||||..! 1970 bp :! ePheProValSerLeuGluThrTyrThrSer++ ++Va 4416 : CTTCCCTGTGTCACTGGAAACGTACACTTCGgt.........................agGT : 6418 388 : eLeuSerThrAlaLeuSerTyrPheThrLeuLeuSerAsnArgIleGluAsnSerSer : 406 !:!!|||||||||:!!||||||||||||||||||!!!.!.|||||||||:!!|||!:! lIleSerThrAlaValSerTyrPheThrLeuLeuArgGlnArgIleGluAspSerAsn 6419 : TATAAGTACAGCAGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAGGACAGCAAT : 6477 vulgar: AmOr80 147 406 . KQ414828.1 2873 6477 + 589 M 37 111 5 0 2 I 0 402 3 0 2 M 57 171 G 1 0 M 51 153 5 0 2 I 0 453 3 0 2 M 3 9 G 1 0 M 89 267 5 0 2 I 0 1966 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2874 6477 589 + . gene_id 4 ; sequence AmOr80 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2874 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2874 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6477 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6477 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2874 6477 589 + . alignment_id 4 ; Query AmOr80 ; Align 2874 148 111 ; Align 3391 185 171 ; Align 3562 243 153 ; Align 4172 294 9 ; Align 4181 298 267 ; Align 6418 387 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr80 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 528 Query range: 181 -> 405 Target range: 32795 -> 34316 182 : LeuIleGlnAlaThrCysValTyrTyrValGlyIleSerTyrPheCysPheAspAsnIle : 201 |||! |||||| !! !|||||| ! ||||||:!:!!!|||.!!||||||||||||||| LeuThrGlnAlaLeuSerValTyrGlnValGlyValCysTyrLeuCysPheAspAsnIle 32796 : ctCACGCAGGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCTttgataacatt : 32853 202 : PheCysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeuArgTyrArgPheThr : 221 ||| ||||||..!:!!|||:!!|||||||||||||||||||||!:!||||||.!!.!! PhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAla 32854 : tttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCC : 32913 222 : LysLeuCysAspMetGluTyrGlyIleLysGluAsn<->SerGlnSerIleLeuSerLys : 240 !!.:!!! ! !:!:... ! !:!:|||...||| !:! !|||! !..! ! AsnValSerGlyLeuSerGluIleValLysSerAsnAspAsnThrSerThrAlaGluLeu 32914 : AATGTGTCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACAAGCACGGCTGAATTA : 32973 241 : GlnMetHisLysPheTyrGluLysPheArgLysCysValGlnHisHisGlnAlaLeuIle : 260 ! .!.|||! !||| ||||||!:!!!.|||:!!|||!!.||||||||||||||| TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 32974 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTaatt : 33033 261 : AspPheTyrGlnAsnLeuGluAsnValTyrThrMetIleThrPheGlyGlnValLeuVal : 280 :::||| ::: ||||||.!.|||!:!|||:!:|||..!.!!||||||||||||:!! GluPheCysGluIleLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMet 33034 : gaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTAATG : 33093 281 : PheSerValLeuIleCysLeuPheGlyTyrGlnValLeuVal >>>> Target Intr : 295 ||||||:!!:!!||||||!!! !||||||:!!||||||:!! 406 bp PheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeu++ 33094 : TTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGgt................ : 33140 296 : on 1 >>>> AlaThrIleSerPheAlaArgArgPheIlePheValPheMetLeuAsnG : 311 !|||:!! !!|||! ! !||| !! !|||..!! !.!.|||! ! ++IleThrLeuProPheGluSerArgValAlaPheThrCysPheLeuIleT 33141 : .........agATAACGTTACCATTTGAATCGCGCGTTGCTTTCACGTGCTTCTTGATTA : 33592 312 : lySerMetPheLeuLeuPheMetValThrTyrSerCysAsnGlyValIleGluHisSerA : 331 !.!!:!! !! !|||!::||| !!||||||||||||||| !!:!!! ! !.!.||| hrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAsnCysIleThrThrGluSerL 33593 : CGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCAATTGCATAACAACAGAAAGCC : 33652 332 : spAsnValAlaValGlyAlaTyrSerAlaLeuTrpThrIleMetProMetAspLysPheG : 351 |||:!!|||! !..!!.!|||:!!!.!! !|||! !! !:!:|||||||||||||||| euAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheG 33653 : TGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATggataaatttg : 33712 352 : lyLysIleLeuArgLysAspLeuIleIleValIleArgArgSerArgArgValCysCysL : 371 |||||:::||||||||||||||| !:!::!!||| !|||:!!|||||| !! !..!| lyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerAlaL 33713 : gaaaactgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCGCTT : 33772 372 : euThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrLys >>>> Target : 387 |||||||| !||||||||| !!:!!!!!|||||||||!:!|||||| 4 euThrAlaCysGlyPhePheSerIleThrLeuGluThrPheThrLys++ 33773 : TGACTGCCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTACTAAGgt........... : 33822 388 : Intron 2 >>>> IleLeuSerThrAlaLeuSerTyrPheThrLeuLeuSerAsnAr : 401 40 bp |||:!!||||||:!!:!!||||||||||||||||||!.!.!.!! ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnSe 33823 : ..............agATCATGAGTACATCAATGTCGTATTTCACCCTACTAAAACAAAG : 34302 402 : gIleGluAsnSer : 405 ! !|||:!!!!! rAlaGluAspThr 34303 : TGCCGAGGACACA : 34316 vulgar: AmOr80 181 405 . KQ414828.1 32795 34316 + 528 M 52 156 G 0 3 M 61 183 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32796 34316 528 + . gene_id 5 ; sequence AmOr80 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32796 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32796 33137 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 2 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34316 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34316 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32796 34316 528 + . alignment_id 5 ; Query AmOr80 ; Align 32796 182 156 ; Align 32955 234 183 ; Align 33544 295 276 ; Align 34260 387 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr80 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 380 Query range: 187 -> 390 Target range: 18048 -> 19644 188 : ValTyrTyrValGlyIleSerTyrPheCysPheAspAsnIlePheCysIleMetAlaVal : 207 :!!|||:!!:!!|||:!:|||||||||||||||||||||......||||||||| !:!! LeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeu 18049 : CTGTACCATATTGGCGTGAGTTATTTCTgcttcgacaattttttatgcatCATGAACTTG : 18106 208 : HisLeuAlaGlyGlnPheArgIleLeuArgTyrArg<-><-><->PheThrLysLeuCys : 224 ||| !||| !|||||||||:!!|||!:!|||||| .!.||| ! ||| HisAlaAlaThrGlnPheArgValLeuGlnTyrArgMetAlaAsnMetThrAspLeuLys 18107 : CACGCGGCTACTCAGTTTCGAGTATTGCAATACCGAATGGCGAATATGACCGATTTAAAG : 18166 225 : AspMetGluTyrGlyIleLysGluAsnSerGlnSerIleLeuSerLysGlnMetHisLys : 244 ||| ||| :::... ..! !|||:!: !||| ! .!. ! ! AspLysGluArgLysGluArgAsnMetLysThrSerValSerSerAlaCysPheAlaThr 18167 : GacaaagagaggaaagagagaaatatgaAGACAAGTGTGAGTTCGGCGTGCTTTGCAACA : 18226 245 : Phe<->TyrGluLysPheArgLysCysValGlnHisHisGlnAlaLeuIleAspPheTyr : 263 |||.!. .!!!:! ! ! !:!!::!!!.|||||| !||||||! !!:!! ! GluCysTyrAsnValLeuLysAspTyrIleArgGlnHisGlnAsnLeuIleAlaTyrCys 18227 : GAATGTTACAACGTTCTCAAAGATTATATCAGACAGCATCAGAACCTGATTGCTTATTGC : 18286 264 : GlnAsnLeuGluAsnValTyrThrMetIleThrPheGlyGlnValLeuValPheSerVal : 283 .!.!!.||||||!!.|||!:!!.!!!:|||..!.!.||||||:!!|||:!!||||||:!! AsnLysLeuGluLysValPheAsnIleIleValLeuGlyGlnLeuLeuMetPheSerMet 18287 : AACAAACTCGAGAAAGTGTTCAATATCATTGTTCTGGGGCAATTGTTAATGTTCAGCATG : 18346 284 : LeuIleCysLeuPheGlyTyrGlnValLeuValAlaThrIleSer{Ph} >>>> Targ : 299 |||||||||||| !|||!:!|||:!!|||:!!!.! !!!:!!!{ } LeuIleCysLeuAspGlyPheGlnIleLeuMetValGlyMetArg{Ar}-+ 18347 : TTGATCTGTCTCGATGGATTTCAGATACTTATGGTTGGTATGAGA{AG}tt......... : 18398 300 : et Intron 1 >>>> {e}AlaArgArgPheIlePheValPheMetLeuAsnGlySer : 312 978 bp { }.!!||| .!.||||||:!!||| :!!...!.!!!! ++{g}ThrArg---LeuIlePheIlePheHisIleGlyAlaCys 18399 : ................ag{A}ACCCGA---CTGATTTTCATCTTTCACATAGGAGCATGC : 19408 313 : MetPheLeuLeuPheMetValThrTyrSerCysAsnGlyValIleGluHisSerAspAsn : 332 |||! !! !|||.!.||| !!||||||||||||:!! !!:!!|||..!.!.||| !:! MetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSerThrSer 19409 : ATGTGTCAATTGCTGATGTTTACCTACAGCTGCGACTGCATCATAAGAGAAAGCACGAGC : 19468 333 : ValAlaValGlyAlaTyrSerAlaLeuTrpThrIleMetProMetAspLysPheGlyLys : 352 ..!|||! !!.!!.!||||||!.!! !||||||:!!:!:||||||..! ! !|||||| ThrAlaGluAlaValTyrSerGlyProTrpThrLeuLeuProMetSerAlaAspGlyLys 19469 : ACCGCCGAGGCGGTGTACAGCGGTCCCTGGACACTTTTACCAATGAGCGCAGACGGAAAA : 19528 353 : IleLeuArgLysAspLeuIleIleValIleArgArgSerArgArgValCysCysLeuThr : 372 !!::!!||||||||||||!!::!!||||||! !||||||!!! ! !|||||||||||| MetIleArgLysAspLeuMetLeuValIleMetArgSerSerValProCysCysLeuThr 19529 : ATGATAAGGAAAGATTTGATGCTCGTTATCATGAGATCGAGCGTACCTTGTTGCTTGACA : 19588 373 : AlaAsnGlyPhePheProValSerLeuGluThrTyrThrLysIleLeuSerThr : 390 |||!..||||||||| !||||||||||||||||||||| !:!!:!! !||| AlaArgGlyPhePheValValSerLeuGluThrTyrThrGlyValIleValThr 19589 : GCCAGAGGATTCTTCGTCGTGTCTTTAGAAACGTACACAGGGGTAATCGTCACC : 19644 vulgar: AmOr80 187 390 . KQ414828.1 18048 19644 + 380 M 32 96 G 0 9 M 26 78 G 0 3 M 53 159 S 0 2 5 0 2 I 0 974 3 0 2 S 1 1 M 2 6 G 1 0 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 18049 19644 380 + . gene_id 6 ; sequence AmOr80 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 18049 18395 . + . KQ414828.1 exonerate:protein2genome:local exon 18049 18395 . + . insertions 12 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18396 18397 . + . intron_id 1 ; splice_site "TT" KQ414828.1 exonerate:protein2genome:local intron 18396 19373 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 19372 19373 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19374 19644 . + . KQ414828.1 exonerate:protein2genome:local exon 19374 19644 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 18049 19644 380 + . alignment_id 6 ; Query AmOr80 ; Align 18049 188 96 ; Align 18154 220 78 ; Align 18235 246 159 ; Align 19375 300 6 ; Align 19381 303 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr80 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 289 Query range: 56 -> 189 Target range: 26897 -> 27465 57 : LeuTyrPheThrLeuLeuTyrAspGlyAspIleLeuTyrValThrThrAsnAsnIleThr : 76 |||||| ...|||::: !! ! !:!!|||:!!.!! !|||..!:!!.!! LeuTyrVal***PheLeuPheLeuGlnValCysMetTyrMetAlaGlyAsnGlyLeuAla 26898 : ttatacgtctaatttctatttctacaGGTTTGCATGTACATGGCTGGCAACGGTTTAGCC : 26955 77 : MetIleMetGlyMetValLysIleCysIleIleLeuIleTyrLysLysLysPheLeuAsn : 96 |||:!!:!!! !!!::!!||||||! !! !:!!:!!:!!:!!|||||||||||||||..! MetValLeuAspIleIleLysIlePheThrLeuValValHisLysLysLysPheLeuGly 26956 : ATGGTTTTGGATATAATCAAGATTTTCACCCTAGTCGTACACAAGAAAAAGTTTCTCGGT : 27015 97 : LeuIleValTyrMetGlnGlnAsnPheTrpAsnValAsnTyrAspHisArgGluLysGln : 116 ||||||! !|||||||||:!!|||||||||:!!:!!|||||||||!!. !|||!!.... LeuIleGluTyrMetGlnLysAsnPheTrpHisLeuAsnTyrAspGlnTyrGluAsnSer 27016 : CTGATTGAGTACATGCAGAAGAATTTTTGGCATTTGAACTACGATCAGTACGAGAATTCT : 27075 117 : IleLeuAspAspCysArgLysThrCysIlePhePheValSerCysValThrIleMetAla : 136 :!!|||! .!....!:!::!! !||||||!:!||||||!! ::::::......::: ValLeuAlaGlnAlaLysArgMetCysIleTyrPheValCysValLeuSerPhePheSer 27076 : GTTTTGGCACAGGCGAAACGAATGTGCATTTACTTCGTGTGcgttttgtcatttttttct : 27135 137 : IleCysAlaMetIleCysTyrIleMetIleProPheIle{A} >>>> Target Intr : 150 :!!:!::!!! !||||||!!:! |||.!!:!!{:} 169 bp GlnSerSerValLeuSerTyrIleIleArgProLeuVal{S}++ 27136 : caatctTCAGTTCTTTCCTATATCATAAGGCCACTTGTA{T}gt................ : 27180 151 : on 1 >>>> {la}GlnSerGlySerAsnGluSerGluArgMetLeuProPheAsnMet : 165 {!!}.!. !|||!.!|||||||||!!:||| ! ! !|||:!!||| ++{er}AsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMet 27181 : .........ag{ca}AATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATG : 27391 166 : TrpIleAsnLeuProIleSerArgThrProTyrTyrGlnIleThrPheLeuIleGlnAla : 185 |||.!!:!!||||||:!!||| !||||||||||||:::||||||::!:!!||||||!.! TrpPheAspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnVal 27392 : TGGTTCGATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTA : 27451 186 : ThrCysValTyr : 189 ! :!!!:! LeuProIlePhe 27452 : TTACCAATTTTC : 27465 vulgar: AmOr80 56 189 . KQ414828.1 26897 27465 + 289 M 93 279 S 0 1 5 0 2 I 0 165 3 0 2 S 1 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26898 27465 289 + . gene_id 7 ; sequence AmOr80 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 26898 27177 . + . KQ414828.1 exonerate:protein2genome:local exon 26898 27177 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 27178 27179 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 27178 27346 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 27345 27346 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 27347 27465 . + . KQ414828.1 exonerate:protein2genome:local exon 27347 27465 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 26898 27465 289 + . alignment_id 7 ; Query AmOr80 ; Align 26898 57 279 ; Align 27349 151 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr80 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 203 Query range: 296 -> 387 Target range: 28511 -> 28784 297 : IleSerPheAlaArgArgPheIlePheValPheMetLeuAsnGlySerMetPheLeuLeu : 316 :!!||||||! ! !!||| !! !!!.!.!! !.!.! !! !.!!:!! !! !||| LeuSerPheGluTrpArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeu 28512 : TTATCATTTGAATGGCGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTA : 28569 317 : PheMetValThrTyrSerCysAsnGlyValIleGluHisSerAspAsnValAlaValGly : 336 !::||| !!||||||||||||:!! !!:!!! ! !.!.||| |||:!!|||! !..! TrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSer 28570 : TGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCT : 28629 337 : AlaTyrSerAlaLeuTrpThrIleMetProMetAspLysPheGlyLysIleLeuArgLys : 356 !.!|||:!!!.!! !|||! !! !:!:|||||||||||||||||||||:::||||||||| ValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLys 28630 : GTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAA : 28689 357 : AspLeuIleIleValIleArgArgSerArgArgValCysCysLeuThrAlaAsnGlyPhe : 376 |||||| !:!::!!||| !|||:!!|||||| !! !! !||||||||| !|||||| AspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThrAlaCysGlyPhe 28690 : GATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGATTC : 28749 377 : PheProValSerLeuGluThrTyrThrLysIle : 387 ||| !!:!!||||||||||||!:!||||||:!! PheSerIleSerLeuGluThrPheThrLysVal 28750 : TTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 28784 vulgar: AmOr80 296 387 . KQ414828.1 28511 28784 + 203 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28512 28784 203 + . gene_id 8 ; sequence AmOr80 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28512 28784 . + . KQ414828.1 exonerate:protein2genome:local exon 28512 28784 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28512 28784 203 + . alignment_id 8 ; Query AmOr80 ; Align 28512 297 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr80 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 195 Query range: 56 -> 152 Target range: 31943 -> 32231 57 : LeuTyrPheThrLeuLeuTyrAspGlyAspIleLeuTyrValThrThrAsnAsnIleThr : 76 |||||| ...|||::: ! ! !:!!|||:!!.!! !|||!:!|||.!! LeuTyrVal***PheLeuPheLeuGlnValCysMetTyrMetAlaCysAsnSerIleAla 31944 : TTATACGtctaatttctatttcttcagGTTTGCATGTACATGGCATGCAACAGTATAGCC : 32001 77 : MetIleMetGlyMetValLysIleCysIleIleLeuIleTyrLysLysLysPheLeuAsn : 96 :!!:!!:!!! !!!::!!||||||! !:!!:!!:!!:!! |||||||||||||||..! LeuValLeuAspIleIleLysIlePheValLeuValValArgLysLysLysPheLeuGly 32002 : CTGGTTTTGGATATAATCAAGATTTTCGTCCTAGTCGTACGGAAGAAAAAGTTTCTCGGT : 32061 97 : LeuIleValTyrMetGlnGlnAsnPheTrpAsnValAsnTyrAspHisArgGluLysGln : 116 ||||||! !|||||||||:::||||||:::::::::|||||||||!!. !|||!!.... LeuIleGluTyrMetGlnLysAsnPhePheHisLeuAsnTyrAspGlnAspGluAsnSer 32062 : CTGATTGAGTACATgcagaagaatttctttcatttgaaCTACGATCAGGACGAGAATTCT : 32121 117 : IleLeuAspAspCysArgLysThrCysIlePhePheValSerCysValThrIleMetAla : 136 |||:!!! !!...!:!::!|||||||||!:!||||||!!! ! !!:!!.!! :!! IleIleAlaHisAlaLysArgThrCysIleTyrPheValCysValPheSerPheCysSer 32122 : ATTATCGCACACGCGAAACGAACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTTCT : 32181 137 : IleCysAlaMetIleCysTyrIleMetIleProPheIleAlaGlnSer : 152 !! !.!!:!:.!!! !||||||!!:! ||||||:!!..!:!!||| GlnSerThrValPheSerTyrIleIleArgProPheValCysLysSer 32182 : CAATCTACAGTTTTTTCCTATATAATAAGGCCATTTGTATGTAAGTCT : 32231 vulgar: AmOr80 56 152 . KQ414828.1 31943 32231 + 195 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31944 32231 195 + . gene_id 9 ; sequence AmOr80 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 31944 32231 . + . KQ414828.1 exonerate:protein2genome:local exon 31944 32231 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31944 32231 195 + . alignment_id 9 ; Query AmOr80 ; Align 31944 57 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr80 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 147 -> 184 Target range: 17818 -> 17929 148 : PheIleAlaGlnSerGlySerAsnGluSerGluArgMetLeuProPheAsnMetTrpIle : 167 .!!:!:|||... |||...|||||||||||||||!!:||||||||||||||||||:!! IleLeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpVal 17819 : ATTTTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTC : 17876 168 : AsnLeuProIleSerArgThrProTyrTyrGlnIleThrPheLeuIleGln : 184 |||||||||:!!|||! !||||||||||||:::||||||||| :::||| AsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln 17877 : AACTTGCCATTATCAATGACGCCATATTACgaaataactttttcattaCAG : 17929 vulgar: AmOr80 147 184 . KQ414828.1 17818 17929 + 148 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17819 17929 148 + . gene_id 10 ; sequence AmOr80 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 17819 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17819 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17819 17929 148 + . alignment_id 10 ; Query AmOr80 ; Align 17819 148 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr80 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 147 -> 189 Target range: 32386 -> 32512 148 : PheIleAlaGlnSerGlySerAsnGluSerGluArgMetLeuProPheAsnMetTrpIle : 167 ...:::|||.!. !|||!.!|||||||||!!:||| ! ! !!:!:!!||||||:!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 32387 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 32444 168 : AsnLeuProIleSerArgThrProTyrTyrGlnIleThrPheLeuIleGlnAlaThrCys : 187 :!!||||||:!!||| !||||||||||||:::||||||::!:!!||||||!.! ! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 32445 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 32504 188 : ValTyr : 189 :!!!:! IlePhe 32505 : ATTTTC : 32512 vulgar: AmOr80 147 189 . KQ414828.1 32386 32512 + 114 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32387 32512 114 + . gene_id 11 ; sequence AmOr80 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 32387 32512 . + . KQ414828.1 exonerate:protein2genome:local exon 32387 32512 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32387 32512 114 + . alignment_id 11 ; Query AmOr80 ; Align 32387 148 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr89 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 645 Query range: 7 -> 402 Target range: 727 -> 6477 8 : AspValSerValAsnLeuAlaAlaPhePheLeuLysAsnValGlyLeuTrpAlaSerAsnAs : 28 |||:!!:!!|||!.!:!!.!!||||||!:!||||||! !:!!|||!!!||| !:!!:!! AspIleAlaValThrValThrAlaPheTyrLeuLysIleIleGlyPheTrpLeuAlaAspTh 728 : GACATAGCGGTGACCGTTACGGCTTTCTACTTGAAAATTATCGGCTTCTGGTTAGCTGACAC : 788 29 : pProGlyHisGluArgArgArgLysValIleLeuValTyrThrMetTrpCysValThrLeuS : 49 ! !! !.!.:!:|||||||||||| ! !!:!|||!!:!:: :!!..!! !: rTyrGluGluLysArgArgArgLysPheAlaGlnAsnPheThrIlePheMetLeuValCysA 789 : TTACGAGGAGAAacgtcgaagaaaattcgcgcAGAATTTCACGATATTTATGCTGGTGTGCG : 851 50 : erSerValValIleIleArgAspValTyrPheThrTrpPheTyrAsnGly >>>> Targe : 66 !! !|||:!! ! ||||||:!!|||!:!|||||| ! !! !.!! 1 laValValIleGluThrArgAspIleTyrTyrThrTrpGlyAspPheSer++ 852 : CTGTGGTAATTGAGACGAGGGATATCTATTACACCTGGGGTGATTTCAGCgt.......... : 904 67 : t Intron 1 >>>> AspIleLeuTyrValValThrAsnAlaLeuSerMetMetMetIle : 80 408 bp !:!!:!!|||:!!:!! !||| !|||!!!:!! !!:! ! ++IleValValTyrIleMetCysAsnIleLeuThrLeuGlyIleSer 905 : ...............agATCGTTGTATACATAATGTGCAACATTCTAACACTGGGCATAAGT : 2352 81 : ThrValLysValCysValIleValValHisLysGluGluPheIleAsnLeuIleValTyrMe : 101 ! !!|||:!!! !:!! :!! ! !|||:!!:!!...:::...|||||| ::: LeuPheLysIlePheLeuSerMetTrpSerLysLysLysLeuLeuGluLeuIleLysPheAl 2353 : TTGTTCAAGATCTTTCTCTCGATGTGGAGTAAGAAAAAACttttggaattaattaaattcgc : 2415 102 : tGlnGluAsnPheTrpAsnAspAsnTyrHisAspLeuArgGluArgGluIleLeuGluAsnC : 122 ::! !|||||||||:!!...:!!||| |||! !!:!|||!:! |||:!!.!..!.| aArgThrAsnPheTrpHisSerAspTyr---AspSerGlnGluGlnIleIleValAsnGluC 2416 : cAGAACGAATTTCTGGCATTCGGATTAT---GACTCGCAGGAGCAAATTATTGTGAACGAGT : 2475 123 : ysLysArgThrCysAlaPhePheValSerLeuValThrAlaIleGlyIleCysAlaIleLeu : 142 ||||||||||||||.!!|||.!!:!!!!!:!! !!!.! !.!!!.!! ! ! .!!:!:! ! ysLysArgThrCysThrPheLeuIleCysValPheAsnPhePheAlaAsnGlyThrValSer 2476 : GTAAACGCACTTGTACATTCCTTATATGCGTGTTTAATTTCTTCGCTAATGGGACAGTGTCT : 2535 143 : SerTyrLeuAlaThrProLeuIle{V} >>>> Target Intron 2 >>>> {al}Gl : 152 .!!|||:!! !! !|||:!!:!!{|} 721 bp {||}! GlyTyrIleIleArgProIleVal{V}++ --{al}Le 2536 : GGATACATAATCAGGCCAATTGTA{G}gt.........................tt{TC}CT : 3286 153 : nThrAlaSerAsnAsnSerGluArgMetLeuProPheAsnMetTrpLeuLysLeuProLeuS : 173 !! !! !.!!||| ... |||::: |||..! ! !! !| uArgGluGlyAsn***GluLeuSer***LysTyrPheSerThrGlnLeuSerLysSerTyrS 3287 : AAGAGAAGGAAATTGAGaattaagttaaaaatatttttctacccAATTATCAAAAAGTTACA : 3349 174 : erGluSerProTyrTyrGluLeu<->MetPheValTyrGlnIleMetThrPheTyrPheIle : 192 |||||! ! !||| !...||| :!:||| ! ||||||.!.! !.!. !:!:!! erGluIleValTyrThrSerLeuCysLeuPheSerLeuGlnIlePheIleIleMetTyrVal 3350 : GTGAAATCGTTTACACCAGTTTATGTCTTTTTTCGCTACAGATTTTTATCATAATGTACGTT : 3409 193 : GlyIleSerTyrPheCysPheAspAsnIlePheCysIleMetThrValHisLeuAlaGlyGl : 213 !!|||||||||.!!|||.!!||||||.!!.!.|||!!:!!:!.!:!!||| !||| !|| CysIleSerTyrLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGl 3410 : TGCATAAGCTACCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCA : 3472 214 : nPheGlnIleLeuArgHisArgPheAspArgLeuCysAsnAla<-><-><->GluAspArgI : 231 ||||!:!||||||!:!:!!|||.!....!.!:!!|||..!||| ...|||:::| nPheArgIleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAspLysI 3473 : ATTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaa : 3535 232 : leAlaGluLys<->GlyAlaHisAlaArgGluPheTyrAspArgPheLysAlaArgValPro : 250 ||::::::||| !:!!:!!:!! !|||! !|||! !!:!|||||| ! !!:!!! ! leSerLysLysThrProSerAsnSerAspGluCysTyrAlaLysPheLysAsnCysIleGln 3536 : tttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAA : 3595 251 : TyrHisGlnAlaLeuIleAspTyrCysGluLysIleGluAsnValSerProThrIleIleLe : 271 ! |||||||||||||||!!:||||||.!.|||:!!:!!.!.|||! ! !! !.!!:!:|| GlnHisGlnAlaLeuIleGluTyrCysAsnLysLeuGlnGluValPheGlyIlePheValLe 3596 : CAGCATCAAGCACTCATAGAATACTGTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCT : 3658 272 : uGluProValMetValPheSerValIleIleCysLeuPheGlyTyrArgIleLeuTrp >> : 291 |! !! !|||:!!:!!||||||:!!:!!!!:|||||| !|||||| !:!::!! uAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAspGlyTyrLeuValMet---++ 3659 : TGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGGATATTTGGTGATG---gt.. : 3717 292 : >> Target Intron 3 >>>> AlaAsnAlaProSerThrArgArgSerIlePheIleP : 303 457 bp ! !:!!.!!|||! !! !!:!||| !! !|||:!:| ++GluAspThrProIleMetGlnArgLeuThrPheLeuP 3718 : .......................agGAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGT : 4208 304 : heLeuLeuIleGlyAlaMetSerLeuLeuPheMetPheThrPheSerCysAsnCysValThr : 323 ||! !|||! |||..!:!!!!!! !|||!!.|||||||||!:!||||||:!!|||:!!! ! heHisLeuThrGlyCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIle 4209 : TTCACCTAACGGGATGCCTGTGCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATA : 4268 324 : GluHisSerGluAsnIleAlaIleGlyAlaTyrSerAlaLeuTrpThrAlaMetProMetAs : 344 ..!.!.||| !|||:!:|||! !!.! !|||..!..!! !|||! ! !:!!|||||||| ArgGluSerLeuAsnValAlaAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAs 4269 : CGAGAAAGCTTGAACGTGGCCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGA : 4331 345 : pLysPheGlyLysMetLeuArgAsnAspLeuIleMetValIleLysArgSerArgArgValC : 365 |!:!! !|||::!|||||||||!!.||||||! !.!.|||||| !||||||||| ! !| pArgSerGlyArgMetLeuArgLysAspLeuThrPheValIleGlyArgSerArgValProC 4332 : CAGATCTGGGCGAATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTT : 4394 366 : ysCysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrThr >>>> Ta : 383 |||||||||||||| !|||||||||||||||||||||||||||||||||:!! ysCysLeuThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 4395 : GCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt....... : 4450 384 : rget Intron 4 >>>> IleLeuSerThrAlaValSerTyrPheThrLeuLeuArgAsn : 396 1970 bp :!!:!!|||||||||||||||||||||||||||||||||.!. ++ValIleSerThrAlaValSerTyrPheThrLeuLeuArgGln 4451 : ..................agGTTATAAGTACAGCAGTGTCGTACTTCACACTGTTAAGGCAA : 6457 397 : AsnValGluLysAlaAsn : 402 ..!:!!||| ! ::!||| ArgIleGluAspSerAsn 6458 : CGTATAGAGGACAGCAAT : 6477 vulgar: AmOr89 7 402 . KQ414828.1 727 6477 + 645 M 58 174 5 0 2 I 0 1404 3 0 2 M 45 135 G 1 0 M 39 117 S 0 1 5 0 2 I 0 717 3 0 2 S 1 2 M 29 87 G 0 3 M 47 141 G 0 9 M 7 21 G 0 3 M 55 165 G 1 0 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 728 6477 645 + . gene_id 1 ; sequence AmOr89 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 728 901 . + . KQ414828.1 exonerate:protein2genome:local exon 728 901 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 902 903 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 902 2309 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 2308 2309 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 2310 2562 . + . KQ414828.1 exonerate:protein2genome:local exon 2310 2562 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 2563 2564 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 2563 3283 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 3282 3283 . + . intron_id 1 ; splice_site "TT" KQ414828.1 exonerate:protein2genome:local cds 3284 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3284 3714 . + . insertions 15 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6477 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6477 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 728 6477 645 + . alignment_id 1 ; Query AmOr89 ; Align 728 8 174 ; Align 2310 66 135 ; Align 2445 112 117 ; Align 3286 152 87 ; Align 3376 181 141 ; Align 3526 228 21 ; Align 3550 235 165 ; Align 4172 291 276 ; Align 6418 383 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr89 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 459 Query range: 237 -> 404 Target range: 11005 -> 13170 238 : AlaArgGluPheTyrAspArgPheLysAlaArgValProTyrHisGlnAlaLeuIleAsp : 257 .!!|||..!! !|||!!:!:!||||||::! !|||! ! ! ||||||.!!||||||||| ThrArgArgSerTyrGluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAsp 11006 : ACACGTAGATCTTACGAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGAT : 11063 258 : TyrCysGluLysIleGluAsnValSerProThrIleIleLeuGluProValMetValPhe : 277 |||! !||||||:!!|||:!!|||! ! !!! !|||||||||! !! !|||:!::!!||| TyrTyrGluLysLeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPhe 11064 : TATTACGAGAAGCTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTC : 11123 278 : SerValIleIleCysLeuPheGlyTyrArgIleLeuTrpAlaAsn >>>> Target I : 293 ||||||:!!||||||||||||||||||!:!||||||! !!.!!:! 1299 SerValLeuIleCysLeuPheGlyTyrGlnIleLeuLeuValSer-+ 11124 : AGTGTGTTAATTTGCCTCTTTGGTTATCAGATATTATTGGTTAGTat............. : 11173 294 : ntron 1 >>>> AlaProSerThrArgArgSerIlePheIlePheLeuLeuIleGlyA : 308 bp ||| !!!!:!!! ! !!!! ! !||||||:!!!!!:!! !. ++AlaAsnThrSerLeuAlaArgArgSerIlePheMetPheLeuIleC 11174 : ............agGCTAATACTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATAT : 12515 309 : laMetSerLeuLeuPheMetPheThrPhe<-><->SerCysAsnCysValThrGluHisS : 326 .! :!!:!!:!!!!.:!!|||! !||| ||||||||| |||! !|||!!.| ysGlyAlaMetValLeuLeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnS 12516 : GTGGCGCCATGGTTTTATTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAA : 12575 327 : erGluAsnIleAlaIleGlyAlaTyrSerAlaLeuTrpThrAlaMetProMetAspLysP : 346 ||!!:|||||||||.!!!.!|||||||||||||||||||||!.!|||||||||:!!||| erAspAsnIleAlaPheAlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysT 12576 : GCGATAATATTGCTTTTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAA : 12635 347 : heGlyLysMetLeuArgAsnAspLeuIleMetValIleLysArgSerArgArgValCysC : 366 !||||||! !||||||:!!|||||||||||||||||| !||||||||||||||||||| hrGlyLysLysLeuArgHisAspLeuIleMetValIleGlyArgSerArgArgValCysC 12636 : CTGGCAAAAAGCTACGGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTT : 12695 367 : ysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrThr >>>> Tar : 383 |||||||||||||||||||||||||||||||||||||||||||||||||| ysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrThr++ 12696 : GTCTGACTGCGAATGGATTTTTCCCTGTGTCCTTAGAAACTTATACTACGgt........ : 12748 384 : get Intron 2 >>>> IleLeuSerThrAlaValSerTyrPheThrLeuLeuArgAs : 396 359 bp |||||||||||||||!.!||||||||||||||||||||||| ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAs 12749 : .................agattttgAGTACCGCGGCGTCGTACTTCACATTATTGAGAAA : 13144 397 : nAsnValGluLysAlaAsnGluAla : 404 |||||||||| ! !.! !:!!||| nAsnValGluAspValValLysAla 13145 : TAACGTAGAAGATGTAGTTAAAGCA : 13170 vulgar: AmOr89 237 404 . KQ414828.1 11005 13170 + 459 M 55 165 5 0 2 I 0 1295 3 0 2 M 25 75 G 0 6 M 65 195 5 0 2 I 0 355 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 11006 13170 459 + . gene_id 2 ; sequence AmOr89 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 11006 11170 . + . KQ414828.1 exonerate:protein2genome:local exon 11006 11170 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 11171 11172 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 11171 12469 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12468 12469 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 12470 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12745 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13104 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13103 13104 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 13105 13170 . + . KQ414828.1 exonerate:protein2genome:local exon 13105 13170 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 11006 13170 459 + . alignment_id 2 ; Query AmOr89 ; Align 11006 238 165 ; Align 12470 293 75 ; Align 12551 318 195 ; Align 13105 383 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr89 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 447 Query range: 0 -> 150 Target range: 7890 -> 9133 1 : MetGlnArgGluValGluLeuAspValSerValAsnLeuAlaAlaPhePheLeuLysAsnVa : 21 ||||||! !||| !!!:! !|||:!!|||:!!||||||:!! !|||||||||:::||||| MetGlnThrGluLysAspSerAspIleSerIleAsnLeuSerLysPhePheLeuArgAsnVa 7891 : ATGCAAACGGAGAAGGATTCGGACATATCGATCAACTTGTCGAAATTCTTCTTGCGCAATGT : 7951 22 : lGlyLeuTrpAlaSerAsnAspProGlyHisGluArgArgArgLysValIleLeuValTyrT : 42 |||||||||| !:!!.!.:!!! !!.!.!..!.|||!:!||||||!.!:!::!!!.!|||| lGlyLeuTrpArgAlaGluAsnHisAlaGluAsnArgLysArgLysAlaLeuValAlaTyrT 7952 : CGGCCTGTGGAGGGCTGAGAATCACGCGGAGAATCGTAAAAGGAAAGCGTTGGTCGCCTACA : 8014 43 : hrMetTrpCysValThrLeuSerSerValValIleIleArgAspValTyrPheThrTrpPhe : 62 ||!!:||| !:!! !|||:!!! !|||||| !! ||||||:!!||||||||||||||| hrIleTrpAsnMetPheLeuAlaIleValValGluThrArgAspMetTyrPheThrTrpPhe 8015 : CGATTTGGAACATGTTTTTGGCCATAGTGGTTGAAACGAGAGATATGTATTTCACCTGGTTC : 8074 63 : TyrAsnGly >>>> Target Intron 1 >>>> AspIleLeuTyrValValThrAsn : 73 |||!!.||| 796 bp ||||||||||||||| !|||||| TyrLysGly++ ++AspIleLeuTyrValSerThrAsn 8075 : TATAAAGGCgt.........................agGATATTCTTTACGTTAGTACCAAC : 8903 74 : AlaLeuSerMetMetMetIleThrValLysValCysValIleValValHisLysGluGluPh : 94 !||||||:!!!!::!:! !|||:!!|||:!! !|||:!!:!!:!!||||||! !||||| LeuLeuSerValIleLeuThrThrIleLysLeuThrValValLeuIleHisLysValGluPh 8904 : TTACTGAGCGTGATCTTAACTACGATCAAGCTAACTGTCGTACTAATACACAAAGTGGAATT : 8966 95 : eIleAsnLeuIleValTyrMetGlnGluAsnPheTrpAsnAspAsnTyrHisAspLeuArgG : 115 |!!:!:!||||||! !|||||| ! |||:!!|||||||||! :!!||| ||||||!.!| eMetSerLeuIleAspTyrMetTyrGluHisPheTrpAsnValAspTyr---AspLeuHisG 8967 : CATGAGTCTGATTGATTACATGTACGAACATTTCTGGAACGTGGATTAC---GATCTTCACG : 9026 116 : luArgGluIleLeuGluAsnCysLysArgThrCysAlaPhePheValSerLeuValThrAla : 135 ||!:!..!|||:!::::|||||||||:::|||||| !.!!|||..!||| !||||||.!! luLysArgIleMetAspAsnCysLysLysThrCysIleIlePheThrSerSerValThrThr 9027 : AGAAAAGAATTATggataattgtaaaaaaactTGCATCATCTTCACTTCAAGCGTCACTACC : 9086 136 : IleGlyIleCysAlaIleLeuSerTyrLeuAlaThrProLeuIle : 150 ||||||||||||||||||:!!||||||:!!|||||||||!!!||| IleGlyIleCysAlaIleIleSerTyrIleAlaThrProPheIle 9087 : ATTGGCATATGCGCTATAATATCTTACATAGCGACACCGTTTATC : 9133 vulgar: AmOr89 0 150 . KQ414828.1 7890 9133 + 447 M 65 195 5 0 2 I 0 792 3 0 2 M 45 135 G 1 0 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 7891 9133 447 + . gene_id 3 ; sequence AmOr89 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 7891 8085 . + . KQ414828.1 exonerate:protein2genome:local exon 7891 8085 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 8086 8087 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 8086 8881 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 8880 8881 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 8882 9133 . + . KQ414828.1 exonerate:protein2genome:local exon 8882 9133 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 7891 9133 447 + . alignment_id 3 ; Query AmOr89 ; Align 7891 1 195 ; Align 8882 66 135 ; Align 9017 112 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr89 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 379 Query range: 220 -> 399 Target range: 32927 -> 34310 221 : PheAspArgLeuCysAsnAlaGluAspArgIleAlaGluLysGlyAlaHisAlaArgGlu : 240 .!...!..!:!! !!.::!.!.|||!.!! !::! ! ! ! !:!!:!!..!:!! LeuSerGluIleValLysSerAsnAspAsnThrSerThrAlaGluLeuTyrSerGluLys 32928 : CTAAGCGAGATAGTGAAGAGCAATGATAATACAAGCACGGCTGAATTATACTCAGAGAAA : 32985 241 : PheTyrAspArgPheLysAlaArgValProTyrHisGlnAlaLeuIleAspTyrCysGlu : 260 ! !||| !!:!|||||| ! !!:!!! ! ! |||||||||||||||::::::|||||| CysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysGlu 32986 : TGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTaattgaattttgtgaa : 33045 261 : LysIleGluAsnValSerProThrIleIleLeuGluProValMetValPheSerValIle : 280 ::!|||.!.|||! ! !!..!|||:!!|||! !! !|||:!::!!||||||:!!||| IleLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMetPheSerIleIle 33046 : atactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTAATGTTTAGCATAATA : 33105 281 : IleCysLeuPheGlyTyrArgIleLeuTrp >>>> Target Intron 1 >>>> A : 291 ||||||!!! !||||||..!:!!||| ! 406 bp IleCysPheAlaGlyTyrGluValLeuLeu++ ++I 33106 : ATTTGCTTCGCCGGGTATGAAGTACTCCTGgt.........................agA : 33544 292 : laAsnAlaProSerThrArgArgSerIlePheIlePheLeuLeuIleGlyAlaMetSerL : 311 !!.. !|||! ! ! !||| ! !|||! ! !!!!|||||| !!.!:!!|||! leThrLeuProPheGluSerArgValAlaPheThrCysPheLeuIleThrGlyValSerG 33545 : TAACGTTACCATTTGAATCGCGCGTTGCTTTCACGTGCTTCTTGATTACGGGCGTGAGTC : 33604 312 : euLeuPheMetPheThrPheSerCysAsnCysValThrGluHisSerGluAsnIleAlaI : 331 !|||!::|||||||||!:!||||||||||||:!!||| !.!.||| !||||||||| lnLeuTrpMetPheThrTyrSerCysAsnCysIleThrThrGluSerLeuAsnIleAlaG 33605 : AACTATGGATGTTCACGTACAGTTGCAATTGCATAACAACAGAAAGCCTGAACATCGCTG : 33664 332 : leGlyAlaTyrSerAlaLeuTrpThrAlaMetProMetAspLysPheGlyLysMetLeuA : 351 !..!!.!|||:!!!.!! !|||! ! !:!:|||||||||||||||||||||:::|||| luSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuA 33665 : AATCTGTGTACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaactgCTAA : 33724 352 : rgAsnAspLeuIleMetValIleLysArgSerArgArgValCysCysLeuThrAlaAsnG : 371 ||!!.|||||| !:!!:!!||| !|||:!!|||||| !! !..!||||||||| !| rgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerAlaLeuThrAlaCysG 33725 : GAAAGGATTTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTG : 33784 372 : lyPhePheProValSerLeuGluThrTyrThrThr >>>> Target Intron 2 >> : 383 |||||||| !!:!!!!!|||||||||!:!|||! ! 440 bp lyPhePheSerIleThrLeuGluThrPheThrLys++ 33785 : GATTCTTTTCTATAACTCTCGAAACCTTTACTAAGgt....................... : 33822 384 : >> IleLeuSerThrAlaValSerTyrPheThrLeuLeuArgAsnAsnValGlu : 399 |||:!!||||||:!!:!!||||||||||||||||||!:!.!.!:!!.!||| ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnSerAlaGlu 33823 : ..agATCATGAGTACATCAATGTCGTATTTCACCCTACTAAAACAAAGTGCCGAG : 34310 vulgar: AmOr89 220 399 . KQ414828.1 32927 34310 + 379 M 70 210 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32928 34310 379 + . gene_id 4 ; sequence AmOr89 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32928 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32928 33137 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 2 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34310 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34310 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32928 34310 379 + . alignment_id 4 ; Query AmOr89 ; Align 32928 221 210 ; Align 33544 291 276 ; Align 34260 383 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr89 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 357 Query range: 236 -> 399 Target range: 22896 -> 24190 237 : HisAlaArgGluPheTyrAspArgPheLysAlaArgValProTyrHisGlnAlaLeuIle : 256 :!!:!!..!:!!! !||| !!:!|||||| ! !!:!!! ! ! ||||||||||||||| TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 22897 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATT : 22954 257 : AspTyrCysGluLysIleGluAsnValSerProThrIleIleLeuGluProValMetVal : 276 !!:!:!|||! !! !:!!|||.!.|||! ! !!..!|||:!!|||! !! !|||:!::!! GluPheCysAlaThrLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMet 22955 : GAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCTAATG : 23014 277 : PheSerValIleIleCysLeuPheGlyTyrArgIleLeuTrp >>>> Target Intr : 291 ! !|||:!!:!!||||||!!!.!!||||||!:!:!!||| ! 492 bp SerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeu++ 23015 : TCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGgt................ : 23061 292 : on 1 >>>> AlaAsnAlaProSerThrArgArgSerIlePheIlePheLeuLeuIleG : 307 !!!. ! !!! ! ! !||| ! !||| ! !!!!|||!!: ++IleLysLeuSerPheGluSerArgValAlaPheAlaCysPheLeuMetM 23062 : .........agATAAAGTTATCATTTGAATCGCGCGTTGCTTTCGCGTGCTTCTTGATGA : 23599 308 : lyAlaMetSerLeuLeuPheMetPheThrPheSerCysAsnCysValThrGluHisSerG : 327 !!.!||||||! !|||!::|||||||||!:!||||||:!!|||:!!||| !.!.||| etGlyMetSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerL 23600 : TGGGCATGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCATAACAACAGAAAGCC : 23659 328 : luAsnIleAlaIleGlyAlaTyrSerAlaLeuTrpThrAlaMetProMetAspLysPheG : 347 !||||||||| !..!!.!|||:!!!.!! !|||! ! !:!:|||||||||||||||| euAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheG 23660 : TGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATGGACAAATTTG : 23719 348 : lyLysMetLeuArgAsnAspLeuIleMetValIleLysArgSerArgArgValCysCysL : 367 |||||:!!||||||!!.!!:||| !|||:!!||| !|||:!!|||||| !! !..!| lyLysLeuLeuArgLysGluLeuGlnMetLeuIleLeuArgAlaArgArgProSerAlaL 23720 : GAAAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGGGCGAGACGACCTTCCGCTT : 23779 368 : euThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrThr >>>> Target : 383 |||||||| !||||||||| !!:!!||||||||||||!:!|||! ! 3 euThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 23780 : TGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt........... : 23829 384 : Intron 2 >>>> IleLeuSerThrAlaValSerTyrPheThrLeuLeuArgAsnAs : 397 13 bp |||:!!||||||:!!:!!||||||||||||||||||!:!.!. ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnCy 23830 : ..............agATCATGAGTACATCAATGTCGTATTTCACATTATTAAAACAATG : 24182 398 : nValGlu : 399 !:!!||| sIleGlu 24183 : TATCGAG : 24190 vulgar: AmOr89 236 399 . KQ414828.1 22896 24190 + 357 M 54 162 5 0 2 I 0 488 3 0 2 M 92 276 5 0 2 I 0 309 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22897 24190 357 + . gene_id 5 ; sequence AmOr89 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22897 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22897 23058 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23059 23060 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23059 23550 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 23549 23550 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 23551 23826 . + . KQ414828.1 exonerate:protein2genome:local exon 23551 23826 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23827 23828 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23827 24139 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 24138 24139 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 24140 24190 . + . KQ414828.1 exonerate:protein2genome:local exon 24140 24190 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22897 24190 357 + . alignment_id 5 ; Query AmOr89 ; Align 22897 237 162 ; Align 23551 291 276 ; Align 24140 383 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr89 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 264 Query range: 285 -> 386 Target range: 19341 -> 19644 286 : TyrArgIleLeuTrpAlaAsnAlaProSerThrArgArgSerIlePheIlePheLeuLeu : 305 ||| !:!!||| !||||||.!!|||!!!! !! !||| !||||||||||||! !:!! TyrTyrValLeuGlnAlaAsnThrProThrArgThrArgLeuIlePheIlePheHisIle 19342 : TATTACGTTTTACAGGCAAATACACCTACCAGAACCCGACTGATTTTCATCTTTCACATA : 19399 306 : IleGlyAlaMetSerLeuLeuPheMetPheThrPheSerCysAsnCysValThrGluHis : 325 !!.!..!|||!!!! !|||.!.|||||||||!:!||||||:!!|||:!!! !..!.!. GlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGlu 19400 : GGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGCTGCGACTGCATCATAAGAGAA : 19459 326 : SerGluAsnIleAlaIleGlyAlaTyrSerAlaLeuTrpThrAlaMetProMetAspLys : 345 ||| !!:!! !||| !.!!.!||||||!.!! !|||||| !:!:||||||..! ! SerThrSerThrAlaGluAlaValTyrSerGlyProTrpThrLeuLeuProMetSerAla 19460 : AGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGACACTTTTACCAATGAGCGCA : 19519 346 : PheGlyLysMetLeuArgAsnAspLeuIleMetValIleLysArgSerArgArgValCys : 365 !|||||||||:!!|||!!.||||||!!::!:||||||! !||||||!!! ! !||| AspGlyLysMetIleArgLysAspLeuMetLeuValIleMetArgSerSerValProCys 19520 : GACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCATGAGATCGAGCGTACCTTGT : 19579 366 : CysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrThrIleLeuSer : 385 ||||||||||||!..||||||||| !||||||||||||||||||||| !:!!:!! ! CysLeuThrAlaArgGlyPhePheValValSerLeuGluThrTyrThrGlyValIleVal 19580 : TGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAACGTACACAGGGGTAATCGTC : 19639 386 : Thr : 386 ||| Thr 19640 : ACC : 19644 vulgar: AmOr89 285 386 . KQ414828.1 19341 19644 + 264 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 19342 19644 264 + . gene_id 6 ; sequence AmOr89 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 19342 19644 . + . KQ414828.1 exonerate:protein2genome:local exon 19342 19644 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 19342 19644 264 + . alignment_id 6 ; Query AmOr89 ; Align 19342 286 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr89 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 226 Query range: 148 -> 230 Target range: 17818 -> 18174 149 : LeuIleValGlnThrAlaSerAsnAsnSerGluArgMetLeuProPheAsnMetTrpLeu : 168 :!!:!:...... ......|||...|||||||||!!:||||||||||||||||||:!! IleLeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpVal 17819 : ATTTTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTC : 17876 169 : LysLeuProLeuSerGluSerProTyrTyrGluLeuMetPheValTyrGln >>>> Ta : 186 !!.|||||||||||| !!!!||||||||||||::: ||| ||| AsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln++ 17877 : AACTTGCCATTATCAATGACGCCATATTACgaaataactttttcattaCAGgt....... : 17932 187 : rget Intron 1 >>>> IleMetThrPheTyrPheIleGlyIleSerTyrPheCysP : 199 110 bp ::!:!!:!!.!.||| !||||||:!:||||||||||||| ++ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysP 17933 : ..................aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgct : 18079 200 : heAspAsnIlePheCysIleMetThrValHisLeuAlaGlyGlnPheGlnIleLeuArgH : 219 ||||||||......|||||||||!.!:!!||| !||| !||||||!:!:!!|||!:!: heAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnT 18080 : tcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAAT : 18139 220 : isArgPheAspArgLeuCysAsnAlaGluAspArg : 230 !!|||.!.! !.!:!! !:!! !:!!|||::: yrArgMetAlaAsnMetThrAspLeuLysAspLys 18140 : ACCGAATGGCGAATATGACCGATTTAAAGGacaaa : 18174 vulgar: AmOr89 148 230 . KQ414828.1 17818 18174 + 226 M 37 111 5 0 2 I 0 106 3 0 2 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17819 18174 226 + . gene_id 7 ; sequence AmOr89 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17819 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17819 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18174 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18174 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17819 18174 226 + . alignment_id 7 ; Query AmOr89 ; Align 17819 149 111 ; Align 18040 186 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr89 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 220 Query range: 301 -> 383 Target range: 38514 -> 38760 302 : IlePheLeuLeuIleGlyAlaMetSerLeuLeuPheMetPheThrPheSerCysAsnCys : 321 !!:||| ! !!!: !!.!:!!|||! !|||!::|||||||||!:!||||||:!!||| MetPheAlaThrMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCys 38515 : ATGTTCGCAACGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGC : 38572 322 : ValThrGluHisSerGluAsnIleAlaIleGlyAlaTyrSerAlaLeuTrpThrAlaMet : 341 :!!||| !.!.||| !||||||||| !..!!.!|||:!!!.!! !|||! ! !:!: IleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeu 38573 : ATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTA : 38632 342 : ProMetAspLysPheGlyLysMetLeuArgAsnAspLeuIleMetValIleLysArgSer : 361 |||||||||||||||||||||:::||||||!!.|||||| !:!!:!!||| !|||:!! ProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAla 38633 : CCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCG : 38692 362 : ArgArgValCysCysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThr : 381 |||||| !! !! !||||||||| !||||||||| !!:!!||||||||||||!:!||| ArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThr 38693 : AGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACT : 38752 382 : ThrIle : 383 ! !:!! LysVal 38753 : AAGGTA : 38760 vulgar: AmOr89 301 383 . KQ414828.1 38514 38760 + 220 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38515 38760 220 + . gene_id 8 ; sequence AmOr89 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38515 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38515 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38515 38760 220 + . alignment_id 8 ; Query AmOr89 ; Align 38515 302 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr89 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 216 Query range: 307 -> 383 Target range: 28556 -> 28784 308 : AlaMetSerLeuLeuPheMetPheThrPheSerCysAsnCysValThrGluHisSerGlu : 327 !.!:!!|||! !|||!::|||||||||!:!||||||:!!|||:!!||| !.!.||| ! GlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeu 28557 : GGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTG : 28614 328 : AsnIleAlaIleGlyAlaTyrSerAlaLeuTrpThrAlaMetProMetAspLysPheGly : 347 ||||||||| !..!!.!|||:!!!.!! !|||! ! !:!:|||||||||||||||||| AsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGly 28615 : AACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttgga : 28674 348 : LysMetLeuArgAsnAspLeuIleMetValIleLysArgSerArgArgValCysCysLeu : 367 |||:::||||||!!.|||||| !:!!:!!||| !|||:!!|||||| !! !! !||| LysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeu 28675 : aaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTG : 28734 368 : ThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrThrIle : 383 |||||| !||||||||| !!:!!||||||||||||!:!|||! !:!! ThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 28735 : ACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 28784 vulgar: AmOr89 307 383 . KQ414828.1 28556 28784 + 216 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28557 28784 216 + . gene_id 9 ; sequence AmOr89 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28557 28784 . + . KQ414828.1 exonerate:protein2genome:local exon 28557 28784 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28557 28784 216 + . alignment_id 9 ; Query AmOr89 ; Align 28557 308 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr89 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 67 -> 153 Target range: 26930 -> 27185 68 : LeuTyrValValThrAsnAlaLeuSerMetMetMetIleThrValLysValCysValIle : 87 :!!|||:!!!.! !|||!.!|||:!!|||:!::!! !! !:!!|||:!!! !..!:!! MetTyrMetAlaGlyAsnGlyLeuAlaMetValLeuAspIleIleLysIlePheThrLeu 26931 : ATGTACATGGCTGGCAACGGTTTAGCCATGGTTTTGGATATAATCAAGATTTTCACCCTA : 26988 88 : ValValHisLysGluGluPheIleAsnLeuIleValTyrMetGlnGluAsnPheTrpAsn : 107 ||||||||||||:!!:!!|||:!!..!||||||! !|||||||||:!!|||||||||:!! ValValHisLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheTrpHis 26989 : GTCGTACACAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTTTGGCAT : 27048 108 : AspAsnTyrHisAspLeuArgGluArgGluIleLeuGluAsnCysLysArgThrCysAla : 127 |||||| |||! ! !|||!.!...:!!|||! !.!....||||||! !||| ! LeuAsnTyr---AspGlnTyrGluAsnSerValLeuAlaGlnAlaLysArgMetCysIle 27049 : TTGAACTAC---GATCAGTACGAGAATTCTGTTTTGGCACAGGCGAAACGAATGTGCATT : 27105 128 : PhePheValSerLeuValThrAlaIleGlyIleCysAlaIleLeuSerTyrLeuAlaThr : 147 !:!||||||!! ::::::::: ...... :!!:!!|||||||||:!! !! ! TyrPheValCysValLeuSerPhePheSerGlnSerSerValLeuSerTyrIleIleArg 27106 : TACTTCGTGTGcgttttgtcatttttttctcaatctTCAGTTCTTTCCTATATCATAAGG : 27165 148 : ProLeuIleValGlnThr : 153 ||||||:!! !:!!:!! ProLeuValCysLysSer 27166 : CCACTTGTATGTAAGTCT : 27185 vulgar: AmOr89 67 153 . KQ414828.1 26930 27185 + 177 M 43 129 G 1 0 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26931 27185 177 + . gene_id 10 ; sequence AmOr89 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 26931 27185 . + . KQ414828.1 exonerate:protein2genome:local exon 26931 27185 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 26931 27185 177 + . alignment_id 10 ; Query AmOr89 ; Align 26931 68 129 ; Align 27060 112 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr89 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 163 Query range: 67 -> 153 Target range: 21897 -> 22152 68 : LeuTyrValValThrAsnAlaLeuSerMetMetMetIleThrValLysValCysValIle : 87 :!!|||:!!!.! !|||::!|||:!!:!!:!::!! !! !:!!|||:!!! !|||:!! MetTyrMetAlaCysAsnSerLeuAlaLeuValLeuAspIleIleLysIlePheValLeu 21898 : ATGTACATGGCATGCAACAGTTTAGCCCTGGTTTTGGATATAATCAAGATTTTCGTCCTA : 21955 88 : ValValHisLysGluGluPheIleAsnLeuIleValTyrMetGlnGluAsnPheTrpAsn : 107 :!!|||!..|||:!!:!!|||:!!..!||||||! !|||||||||:!!|||||||||:!! LeuValArgLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheTrpHis 21956 : CTCGTACGGAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTTTGGCAT : 22015 108 : AspAsnTyrHisAspLeuArgGluArgGluIleLeuGluAsnCysLysArgThrCysAla : 127 |||||| |||! ! !|||!.!...|||:!!! !:!!...|||||||||||| ! LeuAsnTyr---AspGlnAspGluAsnSerIleIleAlaHisAlaLysArgThrCysIle 22016 : TTGAACTAC---GACCAGGACGAGAATTCTATTATCGCACACGCGAAACGAACGTGCATC : 22072 128 : PhePheValSerLeuValThrAlaIleGlyIleCysAlaIleLeuSerTyrLeuAlaThr : 147 !:!||||||!!!:!! !!:!! ! !..! !! !.!!:!!!!!||||||:!! !! ! TyrPheValCysValPheSerPheCysSerGlnSerThrValPheSerTyrIleIleArg 22073 : TACTTCGTCTGCGTCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTATATAATAAGG : 22132 148 : ProLeuIleValGlnThr : 153 |||!!!:!! !:!!:!! ProPheValCysLysSer 22133 : CCATTTGTATGTAAGTCT : 22152 vulgar: AmOr89 67 153 . KQ414828.1 21897 22152 + 163 M 43 129 G 1 0 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21898 22152 163 + . gene_id 11 ; sequence AmOr89 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 21898 22152 . + . KQ414828.1 exonerate:protein2genome:local exon 21898 22152 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 21898 22152 163 + . alignment_id 11 ; Query AmOr89 ; Align 21898 68 129 ; Align 22027 112 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr89 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 185 -> 234 Target range: 10831 -> 10978 186 : IleMetThrPheTyrPheIleGlyIleSerTyrPheCysPheAspAsnIlePheCysIle : 205 ||| !.!.||||||! !||||||!!!|||||||||||||||||||||||||||||| IleSerGlyLeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIle 10832 : ATTTCAGGACTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATC : 10889 206 : MetThrValHisLeuAlaGlyGlnPheGlnIleLeuArgHisArgPheAspArgLeuCys : 225 |||!:!|||||||||::!|||||||||!::||||||!:!:!!|||!!. !:!|||! ! MetSerValHisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSer 10890 : ATGAGCGTGCATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCC : 10949 226 : AsnAlaGluAspArgIleAlaGluLys : 234 :!!!.!:!! !!!:!|||:::|||||| AspValGlnTyrGlnIleSerGluLys 10950 : GACGTACAATATCAGATAAgcgagaaa : 10978 vulgar: AmOr89 185 234 . KQ414828.1 10831 10978 + 162 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10832 10978 162 + . gene_id 12 ; sequence AmOr89 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 10832 10978 . + . KQ414828.1 exonerate:protein2genome:local exon 10832 10978 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10832 10978 162 + . alignment_id 12 ; Query AmOr89 ; Align 10832 186 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr89 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 67 -> 153 Target range: 37041 -> 37296 68 : LeuTyrValValThrAsnAlaLeuSerMetMetMetIleThrValLysValCysValIle : 87 :!!|||:!!!.! !|||!.!|||:!!|||:!::!! !! !:!!|||:!!! ! !:!! MetTyrMetAlaGlyAsnGlyLeuAlaMetValLeuAspIleIleLysIlePheSerLeu 37042 : ATGTACATGGCAGGCAACGGTTTAGCCATGGTTTTGGATATAATCAAGATTTTCTCCCTA : 37099 88 : ValValHisLysGluGluPheIleAsnLeuIleValTyrMetGlnGluAsnPheTrpAsn : 107 ||||||||||||:!!:!!|||:!!..!||||||! !|||||||||:!!||||||! !:!! ValValHisLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheLeuHis 37100 : GTCGTACACAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTCTTGCAT : 37159 108 : AspAsnTyrHisAspLeuArgGluArgGluIleLeuGluAsnCysLysArgThrCysAla : 127 |||||| |||! ! !|||!.!...:!!:!!! !.!....||||||! !||| ! LeuAsnTyr---AspGlnTyrGluAsnSerValIleAlaGlnAlaLysArgMetCysIle 37160 : TTGAACTAC---GATCAGTACGAGAATTCTGTTATCGCACAGGCGAAACGAATGTGCATT : 37216 128 : PhePheValSerLeuValThrAlaIleGlyIleCysAlaIleLeuSerTyrLeuAlaThr : 147 !:!||||||!! ::::::::: ...... :!!:!!|||||||||:!!!.!! ! TyrPheValCysValLeuSerPhePheSerGlnSerSerValLeuSerTyrIleValArg 37217 : TACTTCGTGTGcgttttgtcatttttttctcaatctTCAGTTCTTTCCTATATAGTAAGG : 37276 148 : ProLeuIleValGlnThr : 153 ||||||:!! !:!!:!! ProLeuValCysLysSer 37277 : CCACTTGTATGTAAGTCT : 37296 vulgar: AmOr89 67 153 . KQ414828.1 37041 37296 + 161 M 43 129 G 1 0 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37042 37296 161 + . gene_id 13 ; sequence AmOr89 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37042 37296 . + . KQ414828.1 exonerate:protein2genome:local exon 37042 37296 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 37042 37296 161 + . alignment_id 13 ; Query AmOr89 ; Align 37042 68 129 ; Align 37171 112 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr89 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 67 -> 153 Target range: 31976 -> 32231 68 : LeuTyrValValThrAsnAlaLeuSerMetMetMetIleThrValLysValCysValIle : 87 :!!|||:!!!.! !|||::!:!!:!!:!!:!::!! !! !:!!|||:!!! !|||:!! MetTyrMetAlaCysAsnSerIleAlaLeuValLeuAspIleIleLysIlePheValLeu 31977 : ATGTACATGGCATGCAACAGTATAGCCCTGGTTTTGGATATAATCAAGATTTTCGTCCTA : 32034 88 : ValValHisLysGluGluPheIleAsnLeuIleValTyrMetGlnGluAsnPheTrpAsn : 107 ||||||!..|||:!!:!!|||:!!..!||||||! !|||||||||:::||||||:::::: ValValArgLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPhePheHis 32035 : GTCGTACGGAAGAAAAAGTTTCTCGGTCTGATTGAGTACATgcagaagaatttctttcat : 32094 108 : AspAsnTyrHisAspLeuArgGluArgGluIleLeuGluAsnCysLysArgThrCysAla : 127 |||||| |||! ! !|||!.!...|||:!!! !:!!...|||||||||||| ! LeuAsnTyr---AspGlnAspGluAsnSerIleIleAlaHisAlaLysArgThrCysIle 32095 : ttgaaCTAC---GATCAGGACGAGAATTCTATTATCGCACACGCGAAACGAACGTGCATC : 32151 128 : PhePheValSerLeuValThrAlaIleGlyIleCysAlaIleLeuSerTyrLeuAlaThr : 147 !:!||||||!!!:!! !!:!! ! !..! !! !.!!:!!!!!||||||:!! !! ! TyrPheValCysValPheSerPheCysSerGlnSerThrValPheSerTyrIleIleArg 32152 : TACTTCGTCTGCGTCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTATATAATAAGG : 32211 148 : ProLeuIleValGlnThr : 153 |||!!!:!! !:!!:!! ProPheValCysLysSer 32212 : CCATTTGTATGTAAGTCT : 32231 vulgar: AmOr89 67 153 . KQ414828.1 31976 32231 + 154 M 43 129 G 1 0 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31977 32231 154 + . gene_id 14 ; sequence AmOr89 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 31977 32231 . + . KQ414828.1 exonerate:protein2genome:local exon 31977 32231 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 31977 32231 154 + . alignment_id 14 ; Query AmOr89 ; Align 31977 68 129 ; Align 32106 112 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr89 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 184 -> 220 Target range: 32801 -> 32909 185 : GlnIleMetThrPheTyrPheIleGlyIleSerTyrPheCysPheAspAsnIlePheCys : 204 ||| !:!::!! ! ||| :!!|||:!:!!!|||.!!|||||||||||||||||| GlnAlaLeuSerValTyrGlnValGlyValCysTyrLeuCysPheAspAsnIlePhePhe 32802 : CAGGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCTttgataacatttttttc : 32859 205 : IleMetThrValHisLeuAlaGlyGlnPheGlnIleLeuArgHisArg : 220 |||||| !:!!|||:!!||||||||||||!::||||||!:!:!!||| IleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 32860 : attatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 32909 vulgar: AmOr89 184 220 . KQ414828.1 32801 32909 + 119 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32802 32909 119 + . gene_id 15 ; sequence AmOr89 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 32802 32909 . + . KQ414828.1 exonerate:protein2genome:local exon 32802 32909 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32802 32909 119 + . alignment_id 15 ; Query AmOr89 ; Align 32802 185 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr89 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 236 -> 289 Target range: 38039 -> 38198 237 : HisAlaArgGluPheTyrAspArgPheLysAlaArgValProTyrHisGlnAlaLeuIle : 256 :!!:!!..!:!!! !||| !!:!|||||| ! !!:!!! ! ! ||||||||||||||| TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 38040 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATT : 38097 257 : AspTyrCysGluLysIleGluAsnValSerProThrIleIleLeuGluProValMetVal : 276 !!:!:!|||! !! !:!!|||.!.|||! ! !!..!||| !|||! !! !|||:!::!! GluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnValLeuMet 38098 : GAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCTAATG : 38157 277 : PheSerValIleIleCysLeuPheGlyTyrArgIleLeu : 289 ||||||:!!:!!||||||!!! !!! !|||!:! !||| PheSerIleLeuIleCysPheValValTyrGlnAlaLeu 38158 : TTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTC : 38198 vulgar: AmOr89 236 289 . KQ414828.1 38039 38198 + 106 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38040 38198 106 + . gene_id 16 ; sequence AmOr89 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38040 38198 . + . KQ414828.1 exonerate:protein2genome:local exon 38040 38198 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38040 38198 106 + . alignment_id 16 ; Query AmOr89 ; Align 38040 237 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 555 Query range: 150 -> 402 Target range: 2882 -> 6477 151 : AsnIleGlyLysAsnLysSerGluArgIleLeuProPheLysMetTrpValAspLeuProLe : 171 !::||||||||||||:::|||!!:|||:!!||| ! !!!!..!.|||:!!|||||||||:! SerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuProIl 2883 : AgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCCGAT : 2943 172 : uSerValThrProTyrTyrGluIleMetPheValIleGln >>>> Target Intron 1 : 185 !!!!:!!||||||||||||||||||:::|||...|||||| 406 bp eThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2944 : AACCATCACACCATactatgaaatattatttacgaTACAGgt.................... : 2987 186 : >>>> LeuLeuAlaValGluGlnIleGlyIleAlaTyrValCysSerAspPhePheLeuC : 203 :!!!!! !:!! ! ! :!! !!|||::!|||:!!|||! !||| !||||||| ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheLeuC 2988 : .....agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTCTGT : 3445 204 : ysIleLeuAsnLeuHisAlaLeuTyrGlnPheArgMetMetGlnGlnGluLeuSerLysIle : 223 ||!!::!!|||||||||.!! ! !|||||||||!!::!!||| ! ..!||||||!!.:!: ysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnVal 3446 : GCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAATGTG : 3505 224 : TrpSerAlaIleGluGlnGln<-><-><->ThrThrSerValAlaAlaTyrThrArgGlyCy : 241 !! .!!|||! !|||!::... ::: ...... !!:!! !!:!! !! !|| CysGlyAlaAsnGluArgSerAspLysIleSerLysLysThrProSerAsnSerAspGluCy 3506 : TGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATG : 3568 242 : sHisValAlaLeuLysLysCysIleArgArgHisGlnSerLeuIleGluPheCysAsnLysL : 262 |:!!!.! !!!!|||!!.||||||!:!!:!||||||:!!|||||||||!:!|||||||||| sTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnLysL 3569 : CTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACAAAC : 3631 263 : euGluGlnValPheThrPheProIleLeuSerHisValValValPheSerLeuLeuMetCys : 282 ||:!!:!!|||||| !.!. !:!:|||:!!!!.|||:!!:!!|||||||||||||||||| euGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCys 3632 : TTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGC : 3691 283 : PheAspThrTyrGluIleLeuLeu >>>> Target Intron 2 >>>> AlaAspIle : 293 .!!||| !||| :!::!!:!! 457 bp ! !|||! ! LeuAspGlyTyr---LeuValMet++ ++GluAspThr 3692 : CTCGATGGATAT---TTGGTGATGgt.........................agGAAGATACT : 4178 294 : ProThrLeuLysArgLeuIlePheLeuCysHisMetValAlaSerPheIleHisIleIlePh : 314 |||! !:!!:!!||||||! !||||||! !|||:!:..!!.!!!!.!. !!!.:!::!:.! ProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuMe 4179 : CCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGAT : 4241 315 : ePheThrTyrIleCysHisGlyLeuMetGluGluSerGlyAsnValGlyLeuAlaThrTyrS : 335 .|||||||||! !||| !! !!|||!!:..!|||||| !||||||!.! !|||! !|||. tPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIleTyrA 4242 : GTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATATACG : 4304 336 : erGlyTrpTrpThrThrLeuProMetAsnGluThrGlyArgMetLeuArgLysAspIleArg : 355 .! !!! !|||! ! !|||||||||:!!..!:!!|||||||||||||||||||||:!:! ! spCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAspLeuThr 4305 : ACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGACA : 4364 356 : IleIleMetMetLysSerMetArgProCysTyrLeuSerArgSerGlyPhePheProMetSe : 376 .!!:!!!!: !:!|||! !||||||! !|||!!! !!!!||||||||||||:!!|| PheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePheProValSe 4365 : TTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTC : 4427 377 : rLeuGluThrSerThrAla >>>> Target Intron 3 >>>> LeuValSerSerTh : 387 ||||||||||! !|||:!! 1970 bp :!!:!!|||!!!.! rLeuGluThrTyrThrSer++ ++ValIleSerThrAl 4428 : ACTGGAAACGTACACTTCGgt.........................agGTTATAAGTACAGC : 6430 388 : rMetSerTyrPheThrLeuMetArgGluSerSerMetLysThrAsn : 402 !:!!|||||||||||||||:!:|||:!! !!! ! ! ! !:!||| aValSerTyrPheThrLeuLeuArgGlnArgIleGluAspSerAsn 6431 : AGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAGGACAGCAAT : 6477 vulgar: AmOr74FIX 150 402 . KQ414828.1 2882 6477 + 555 M 34 102 5 0 2 I 0 402 3 0 2 M 46 138 G 0 9 M 56 168 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2883 6477 555 + . gene_id 1 ; sequence AmOr74FIX ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2883 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2883 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 9 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6477 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6477 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2883 6477 555 + . alignment_id 1 ; Query AmOr74FIX ; Align 2883 151 102 ; Align 3391 185 138 ; Align 3538 231 168 ; Align 3706 288 9 ; Align 4172 291 276 ; Align 6418 383 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 380 Query range: 228 -> 398 Target range: 18195 -> 19903 229 : GlnGlnThrThrSerValAlaAlaTyrThrArgGlyCysHisValAlaLeuLysLysCys : 248 :!! !!:!..!||| !|||..!!:!.!!! !! !|||:!! !!.!|||||| ! ! ! LysThrSerValSerSerAlaCysPheAlaThrGluCysTyrAsnValLeuLysAspTyr 18196 : aAGACAAGTGTGAGTTCGGCGTGCTTTGCAACAGAATGTTACAACGTTCTCAAAGATTAT : 18253 249 : IleArgArgHisGlnSerLeuIleGluPheCysAsnLysLeuGluGlnValPheThrPhe : 268 ||||||!:!||||||!:!||||||! !:!|||||||||||||||:!!||||||!.!.!! IleArgGlnHisGlnAsnLeuIleAlaTyrCysAsnLysLeuGluLysValPheAsnIle 18254 : ATCAGACAGCATCAGAACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGTTCAATATC : 18313 269 : ProIleLeuSerHisValValValPheSerLeuLeuMetCysPheAspThrTyrGluIle : 288 !:!!|||.!!!!.:!!:!!:!!||||||:!!|||!!:|||.!!||| !!:!:!!||| IleValLeuGlyGlnLeuLeuMetPheSerMetLeuIleCysLeuAspGlyPheGlnIle 18314 : ATTGTTCTGGGGCAATTGTTAATGTTCAGCATGTTGATCTGTCTCGATGGATTTCAGATA : 18373 289 : LeuLeu >>>> Target Intron 1 >>>> AlaAspIleProThrLeuLysArgL : 299 |||:!! 975 bp |||:!!! !|||||| !! |||| LeuMet++ ++AlaAsnThrProThrArgThrArgL 18374 : CTTATGgt.........................agGCAAATACACCTACCAGAACCCGAC : 19381 300 : euIlePheLeuCysHisMetValAlaSerPheIleHisIleIlePhePheThrTyrIleC : 319 ||||||||:!!! !|||!!:! !|||!!!.!. !!!.:!::!:.!.|||||||||! !| euIlePheIlePheHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSerC 19382 : TGATTTTCATCTTTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGCT : 19441 320 : ysHisGlyLeuMetGluGluSerGlyAsnValGlyLeuAlaThrTyrSerGlyTrpTrpT : 339 || !! !!:!!!!:..!|||||| !!:!..!!.! !|||..!||||||||| |||| ysAspCysIleIleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyProTrpT 19442 : GCGACTGCATCATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGA : 19501 340 : hrThrLeuProMetAsnGluThrGlyArgMetLeuArgLysAspIleArgIleIleMetM : 359 || !|||||||||!:!! ! !|||!:!|||:!!|||||||||:!:! !:!!:!!!!:| hrLeuLeuProMetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuValIleM 19502 : CACTTTTACCAATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCA : 19561 360 : etLysSerMetArgProCysTyrLeuSerArgSerGlyPhePheProMetSerLeuGluT : 379 ||!:!|||! !||||||! !|||!!! !!!!||||||||| !:!!|||||||||| etArgSerSerValProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGluT 19562 : TGAGATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAA : 19621 380 : hrSerThrAla >>>> Target Intron 2 >>>> LeuValSerSerThrMetSe : 389 ||! !|||!.! 223 bp :!!:!!|||!!!.!! || hrTyrThrGly++ ++ValLeuSerThrAlaAlaSe 19622 : CGTACACAGGGgt.........................agGTTTTAAGCACCGCAGCCTC : 19874 390 : rTyrPheThrLeuMetArgGluSerSer : 398 |||||||||||||:!!!:!:!!!!!||| rTyrPheThrLeuLeuLysGlnArgSer 19875 : ATACTTTACGTTGCTGAAGCAAAGATCA : 19903 vulgar: AmOr74FIX 228 398 . KQ414828.1 18195 19903 + 380 M 62 186 5 0 2 I 0 971 3 0 2 M 92 276 5 0 2 I 0 219 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 18196 19903 380 + . gene_id 2 ; sequence AmOr74FIX ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 18196 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18196 18381 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19903 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19903 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 18196 19903 380 + . alignment_id 2 ; Query AmOr74FIX ; Align 18196 229 186 ; Align 19357 291 276 ; Align 19856 383 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 258 Query range: 147 -> 293 Target range: 32386 -> 33146 148 : IleTyrGluAsnIleGlyLysAsnLysSerGluArgIleLeuProPheLysMetTrpVal : 167 ||| |||:!!|||||||||:!!|||!!:||| !! ! !!:! ! ||||||:!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 32387 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 32444 168 : AspLeuProLeuSerValThrProTyrTyrGluIleMetPheValIleGlnLeuLeuAla : 187 |||||||||||||||||||||||||||||||||||| ::!:!!||||||:!!||| !! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 32445 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 32504 188 : ValGluGlnIleGly{I} >>>> Target Intron 1 >>>> {le}AlaTyrVal : 196 :!! ..!! {!} 307 bp {!:}..!|||:!! IlePheSerArgGln{M}-+ ++{et}CysTyrLeu 32505 : ATTTTCTCAAGGCaa{a}ct.........................ag{TG}TGTTACCTT : 32838 197 : CysSerAspPhePheLeuCysIleLeuAsnLeuHisAlaLeuTyrGlnPheArgMetMet : 216 |||! ||| ...... |||::: !||||||!.! ! !|||||||||!!::!: CysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeu 32839 : TGCTttgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTA : 32898 217 : GlnGlnGluLeuSerLysIleTrpSerAlaIleGlu<-><-><-><->GlnGlnThrThr : 232 ||| ! ..!:!!:!!!!.:!:! .!! !! !||| .!..!.!.!||| GlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerAsnAspAsnThr 32899 : CAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACA : 32958 233 : SerValAla<->AlaTyrThrArgGlyCysHisValAlaLeuLysLysCysIleArgArg : 251 |||..!||| !|||:!!..! !|||:!!:!! !!!!|||!!.||||||!:!!:! SerThrAlaGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGln 32959 : AGCACGGCTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAA : 33018 252 : HisGlnSerLeuIleGluPheCysAsnLysLeuGluGlnValPheThrPheProIleLeu : 271 ||||||:!!|||||||||||||||... ||||||:!!||||||||| ! !:!!||| HisGlnAlaLeuIleGluPheCysGluIleLeuGluGluValPheThrValIleValLeu 33019 : CATCAGGCACTaattgaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTC : 33078 272 : SerHisValValValPheSerLeuLeuMetCysPheAspThrTyrGluIleLeuLeuAla : 291 .!!!!.|||:!!:!!||||||:!!:!!!!:||||||! ! !||||||:!!||||||!.! GlyGlnValLeuMetPheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeuVal 33079 : GGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGGTG : 33138 292 : AspIle : 293 ..!||| SerIle 33139 : AGTATC : 33146 vulgar: AmOr74FIX 147 293 . KQ414828.1 32386 33146 + 258 M 45 135 S 0 1 5 0 2 I 0 303 3 0 2 S 1 2 M 35 105 G 0 12 M 7 21 G 0 3 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32387 33146 258 + . gene_id 3 ; sequence AmOr74FIX ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32387 32522 . + . KQ414828.1 exonerate:protein2genome:local exon 32387 32522 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32523 32524 . + . intron_id 1 ; splice_site "ct" KQ414828.1 exonerate:protein2genome:local intron 32523 32829 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32828 32829 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32830 33146 . + . KQ414828.1 exonerate:protein2genome:local exon 32830 33146 . + . insertions 15 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32387 33146 258 + . alignment_id 3 ; Query AmOr74FIX ; Align 32387 148 135 ; Align 32832 194 105 ; Align 32949 229 21 ; Align 32973 236 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 234 Query range: 147 -> 223 Target range: 17818 -> 18156 148 : IleTyrGluAsnIleGlyLysAsnLysSerGluArgIleLeuProPheLysMetTrpVal : 167 |||! |||||||||||||||:::|||||||||||||||||||||!!.||||||||| IleLeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpVal 17819 : ATTTTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTC : 17876 168 : AspLeuProLeuSerValThrProTyrTyrGluIleMetPheValIleGln >>>> Ta : 185 :!!||||||||||||:!!|||||||||||||||||| ||| :::||| AsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln++ 17877 : AACTTGCCATTATCAATGACGCCATATTACgaaataactttttcattaCAGgt....... : 17932 186 : rget Intron 1 >>>> LeuLeuAlaValGluGlnIleGlyIleAlaTyrValCysS : 198 110 bp ::!|||:!!:!! ! !!.||||||:!:::!||| !!||| ++ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysP 17933 : ..................aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgct : 18079 199 : erAspPhePheLeuCysIleLeuAsnLeuHisAlaLeuTyrGlnPheArgMetMetGlnG : 218 ||| ||||||||||||:!!|||||||||||| ! !|||||||||:!::!!||| heAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnT 18080 : tcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAAT : 18139 219 : lnGluLeuSerLysIle : 223 ! ..!:!!:!!!!.!!: yrArgMetAlaAsnMet 18140 : ACCGAATGGCGAATATG : 18156 vulgar: AmOr74FIX 147 223 . KQ414828.1 17818 18156 + 234 M 37 111 5 0 2 I 0 106 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17819 18156 234 + . gene_id 4 ; sequence AmOr74FIX ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17819 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17819 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18156 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18156 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17819 18156 234 + . alignment_id 4 ; Query AmOr74FIX ; Align 17819 148 111 ; Align 18040 185 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 228 Query range: 147 -> 298 Target range: 22307 -> 23082 148 : IleTyrGluAsnIleGlyLysAsnLysSerGluArgIleLeuProPheLysMetTrpVal : 167 ||| |||:!!|||||||||:!!|||!!:||| !! ! !!:! ! ||||||:!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 22308 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 22365 168 : AspLeuProLeuSerValThrProTyrTyrGluIleMetPhe >>>> Target Intr : 182 |||||||||||||||||||||||||||||||||||| ::! 316 bp AspLeuProLeuSerValThrProTyrTyrGluIleThrTyr-+ 22366 : GATCTACCATTATCCGTAACAccatattatgaaattacttACat................ : 22412 183 : on 1 >>>> ValIleGlnLeuLeuAlaValGluGlnIleGlyIleAlaTyrValCysS : 198 !.!:!!...:!!! ! !|||... ! ! !:!!..!::: ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleI 22413 : .........agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatca : 22774 199 : erAspPhePheLeuCys<-><->IleLeuAsnLeuHisAlaLeuTyrGlnPheArgMetM : 216 |||...|||||| :!: !..!! ! ! !:!! |||!:!|||!!: lePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleA 22775 : tttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTG : 22834 217 : et<->GlnGlnGluLeuSerLysIleTrpSerAlaIleGluGlnGlnThrThrSerValA : 235 !..!! ||||||:!!||| !!.!::!! !|||.!.! !!:!|||..! ! laAsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSerThrAsp---G 22835 : CCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGAT---G : 22891 236 : laAlaTyrThrArgGlyCysHisValAlaLeuLysLysCysIleArgArgHisGlnSerL : 255 ! !|||:!!..! !|||:!!:!! !!!!|||!!.||||||!:!!:!||||||:!!| luLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaL 22892 : AATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCAC : 22951 256 : euIleGluPheCysAsnLysLeuGluGlnValPheThrPheProIleLeuSerHisValV : 275 |||||||||||||| ! !||||||:!!||||||||| ! !:!!|||.!!!!.|||: euIleGluPheCysAlaThrLeuGluGluValPheThrValIleValLeuGlyGlnValL 22952 : TAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCC : 23011 276 : alValPheSerLeuLeuMetCysPheAspThrTyrGluIleLeuLeuAlaAspIleProT : 295 !!:!!! !|||:!!|||!!:|||||| ! !|||:!!:!!||||||!.!..!||| !! euMetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeuValSerIleGluS 23012 : TAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGGTGAGTATCGAAA : 23071 296 : hrLeuLysArg : 298 :!! !!!.!:! erTyrAsnLys 23072 : GCTATAATAAA : 23082 vulgar: AmOr74FIX 147 298 . KQ414828.1 22307 23082 + 228 M 34 102 5 0 2 I 0 312 3 0 2 M 22 66 G 0 6 M 13 39 G 0 3 M 17 51 G 1 0 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22308 23082 228 + . gene_id 5 ; sequence AmOr74FIX ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22308 22409 . + . KQ414828.1 exonerate:protein2genome:local exon 22308 22409 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22410 22411 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 22410 22725 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 23082 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 23082 . + . insertions 9 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 22308 23082 228 + . alignment_id 5 ; Query AmOr74FIX ; Align 22308 148 102 ; Align 22726 182 66 ; Align 22798 204 39 ; Align 22840 217 51 ; Align 22891 235 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 290 -> 385 Target range: 12469 -> 12754 291 : AlaAspIleProThrLeuLysArgLeuIlePheLeuCysHisMetValAlaSerPheIle : 310 |||:!!! ! !! ! !!:!||| !||||||:!!! !! !!!: !!.!:!!.!.:!! AlaAsnThrSerLeuAlaArgArgSerIlePheMetPheLeuIleCysGlyAlaMetVal 12470 : GCTAATACTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTT : 12527 311 : HisIleIlePhePheThrTyrIleCysHisGlyLeuMetGluGluSerGlyAsnValGly : 330 :!:.!!.!.|||||||||! !|||:!! !:!!!!:|||:!!|||! !|||:!!!.! LeuLeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAla 12528 : TTATTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCT : 12587 331 : LeuAlaThrTyrSerGlyTrpTrpThrThrLeuProMetAsnGluThrGlyArgMetLeu : 350 !!!|||.!!||||||!.! |||||| !:!!|||||||||:!!||||||!:!! !||| PheAlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeu 12588 : TTTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTA : 12647 351 : ArgLysAspIleArgIleIleMetMetLysSerMetArgProCysTyrLeuSerArgSer : 370 ||| ! |||:!:! !!!::!!!!: !!:!|||! ||| !|||! !|||!!! !!:! ArgHisAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsn 12648 : CGGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAAT : 12707 371 : GlyPhePheProMetSerLeuGluThrSerThrAlaLeuValSer : 385 ||||||||||||:!!||||||||||||! !|||.!!:!! !||| GlyPhePheProValSerLeuGluThrTyrThrThrValSerSer 12708 : GGATTTTTCCCTGTGTCCTTAGAAACTTATACTACGGTGAGTTCA : 12754 vulgar: AmOr74FIX 290 385 . KQ414828.1 12469 12754 + 205 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 12470 12754 205 + . gene_id 6 ; sequence AmOr74FIX ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 12470 12754 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12754 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 12470 12754 205 + . alignment_id 6 ; Query AmOr74FIX ; Align 12470 291 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 190 Query range: 147 -> 223 Target range: 37450 -> 37985 148 : IleTyrGluAsnIleGlyLysAsnLysSerGluArgIleLeuProPheLysMetTrpVal : 167 ||| |||:!!|||||||||:!!|||!!:||| !! ! !!:! ! ||||||:!! IleSerAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 37451 : atttcagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 37508 168 : AspLeuProLeuSerValThrProTyrTyrGluIleMetPheValIleGln >>>> Ta : 185 |||||||||||||||:!!|||||||||||||||||| ::!:!!|||||| AspLeuProLeuSerIleThrProTyrTyrGluIleThrTyrIleIleGln++ 37509 : GATCTACCATTATCCATAACAccatattatgaaattacttACATAATACAGgt....... : 37564 186 : rget Intron 1 >>>> LeuLeuAlaValGluGlnIleGlyIleAlaTyrValCysS : 198 307 bp !|||:!!||| ! |||:!!.!! ..!|||:!!||| ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysP 37565 : ..................agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCt : 37908 199 : erAspPhePheLeuCysIleLeuAsnLeuHisAlaLeuTyrGlnPheArgMetMetGlnG : 218 |||......... |||||| ||||||!.! ! !|||||||||!!::!:||| heAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnT 37909 : ttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAAT : 37968 219 : lnGluLeuSerLysIle : 223 ! ..!:!!:!!!!.:!: yrArgIleAlaAsnVal 37969 : ACAGAATTGCCAATGTG : 37985 vulgar: AmOr74FIX 147 223 . KQ414828.1 37450 37985 + 190 M 37 111 5 0 2 I 0 303 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37451 37985 190 + . gene_id 7 ; sequence AmOr74FIX ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37451 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37451 37561 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 37985 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 37985 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37451 37985 190 + . alignment_id 7 ; Query AmOr74FIX ; Align 37451 148 111 ; Align 37869 185 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 236 -> 293 Target range: 38039 -> 38210 237 : TyrThrArgGlyCysHisValAlaLeuLysLysCysIleArgArgHisGlnSerLeuIle : 256 |||:!!..! !|||:!!:!! !!!!|||!!.||||||!:!!:!||||||:!!|||||| TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 38040 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATT : 38097 257 : GluPheCysAsnLysLeuGluGlnValPheThrPheProIleLeuSerHisValValVal : 276 ||||||||| ! !||||||:!!||||||||| ! ! !|||.!!!!.|||:!!:!! GluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnValLeuMet 38098 : GAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCTAATG : 38157 277 : PheSerLeuLeuMetCysPheAspThrTyrGluIleLeuLeuAlaAspIle : 293 ||||||:!!|||!!:||||||! !..!|||:!! !||||||!.!..!||| PheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeuValSerIle 38158 : TTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGGTGAGTATC : 38210 vulgar: AmOr74FIX 236 293 . KQ414828.1 38039 38210 + 158 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38040 38210 158 + . gene_id 8 ; sequence AmOr74FIX ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38040 38210 . + . KQ414828.1 exonerate:protein2genome:local exon 38040 38210 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38040 38210 158 + . alignment_id 8 ; Query AmOr74FIX ; Align 38040 237 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 147 -> 188 Target range: 27339 -> 27462 148 : IleTyrGluAsnIleGlyLysAsnLysSerGluArgIleLeuProPheLysMetTrpVal : 167 ||| |||:!!|||||||||:!!|||!!:||| !! ! !||| ! |||||| !! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPhe 27340 : attttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTC : 27397 168 : AspLeuProLeuSerValThrProTyrTyrGluIleMetPheValIleGlnLeuLeuAla : 187 |||||||||||||||||||||||||||||||||||| ::!:!!||||||:!!||| !! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 27398 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 27457 188 : Val : 188 :!! Ile 27458 : ATT : 27462 vulgar: AmOr74FIX 147 188 . KQ414828.1 27339 27462 + 135 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27340 27462 135 + . gene_id 9 ; sequence AmOr74FIX ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27340 27462 . + . KQ414828.1 exonerate:protein2genome:local exon 27340 27462 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27340 27462 135 + . alignment_id 9 ; Query AmOr74FIX ; Align 27340 148 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 153 -> 188 Target range: 9337 -> 9442 154 : LysAsnLysSerGluArgIleLeuProPheLysMetTrpValAspLeuProLeuSerValTh : 174 !..||||||||||||||| !!!! !||| ! ||||||:!!:!!|||||||||!!!|||:! SerAsnLysSerGluArgAlaPheLeuPheAspMetTrpLeuAsnLeuProLeuThrValSe 9338 : AGCAACAAATCTGAAAGAGCGTTTCTGTTCGACATGTGGCTCAATTTACCTCTGACTGTTTC : 9398 175 : rProTyrTyrGluIleMetPheValIleGlnLeuLeuAlaVal : 188 !|||||||||||| !|||!!.!.!:!!|||:!!!!! ||| rProTyrTyrGluGlyMetLeuAlaValGlnValPheProVal 9399 : GCCTTACTACGAAGGAATGTTGGCTGTACAGGTATTTCcagtt : 9442 vulgar: AmOr74FIX 153 188 . KQ414828.1 9337 9442 + 104 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 9338 9442 104 + . gene_id 10 ; sequence AmOr74FIX ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 9338 9442 . + . KQ414828.1 exonerate:protein2genome:local exon 9338 9442 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 9338 9442 104 + . alignment_id 10 ; Query AmOr74FIX ; Align 9338 154 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr73 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 294 -> 348 Target range: 258462 -> 258624 295 : LysSerAsnLysValSerAspAlaIleTyrGluMetAspTrpThrIleLeuProSerA : 314 :!!!!!!!.||||||.!!|||!.!:!!||| !! |||||| ! !||||||..!! GlnCysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspL 258463 : CAGTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACA : 258520 315 : snValMetLysAspLeuLeuLeuValIleAlaArgSerLysLysProValLysIleTh : 333 !. !!!: ||||||:!!||||||||||||||||||!.. ! !|||:!!||||| ysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleTh 258521 : AAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCAC : 258577 334 : rSerGlyGlnIlePheIleLeuSerThrGluSerPheMetLysIle : 348 |:!!|||:::...||| ::!|||! ! ! !!!|||! ! :!: rAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAspVal 258578 : CGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATGTG : 258624 vulgar: AmOr73 294 348 . KQ414889.1 258462 258624 + 112 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258463 258624 112 + . gene_id 1 ; sequence AmOr73 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 258463 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258463 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258463 258624 112 + . alignment_id 1 ; Query AmOr73 ; Align 258463 295 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr73 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 297 -> 345 Target range: 254280 -> 254424 298 : LysValSerAspAlaIleTyrGluMetAspTrpThrIleLeuProSerAsnValMetL : 317 ||||||.!!!!:!.!:!!||| !! |||||| ! !||||||..!!.. !!!: LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 254281 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 254338 318 : ysAspLeuLeuLeuValIleAlaArgSerLysLysProValLysIleThrSerGlyGl : 336 ||||||:!!|||:!!|||.!!||||||!!. ! !|||:!!||||||:::|||:: euAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLy 254339 : TCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaa : 254395 337 : nIlePheIleLeuSerThrGluSerPhe : 345 :|||||| :::||| ! ! !!!||| sIlePheHisMetSerLeuTyrThrPhe 254396 : aatattccatatgTCGCTTTACACGTTC : 254424 vulgar: AmOr73 297 345 . KQ414889.1 254280 254424 + 106 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254281 254424 106 + . gene_id 2 ; sequence AmOr73 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254281 254424 . + . KQ414889.1 exonerate:protein2genome:local exon 254281 254424 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254281 254424 106 + . alignment_id 2 ; Query AmOr73 ; Align 254281 298 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr73 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 297 -> 345 Target range: 238634 -> 238778 298 : LysValSerAspAlaIleTyrGluMetAspTrpThrIleLeuProSerAsnValMetL : 317 ||||||.!!!!:!.!:!!||| !! |||||| ! !||||||..!!.. !!!: LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 238635 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 238692 318 : ysAspLeuLeuLeuValIleAlaArgSerLysLysProValLysIleThrSerGlyGl : 336 ||||||:!!|||:!!||| !||||||!!. ! !||||||:!!|||:!!|||:! euAspLeuIleLeuIleIleLysArgSerAsnValValValLysValThrAlaGlyLy 238693 : TCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCACCGCTGGAAA : 238749 337 : nIlePheIleLeuSerThrGluSerPhe : 345 !:!!!!. !:!!||| ! ! !!!||| sValLeuHisMetSerLeuTyrThrPhe 238750 : AGTATTACATATGTCGCTTTACACGTTC : 238778 vulgar: AmOr73 297 345 . KQ414889.1 238634 238778 + 101 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238635 238778 101 + . gene_id 3 ; sequence AmOr73 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238635 238778 . + . KQ414889.1 exonerate:protein2genome:local exon 238635 238778 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238635 238778 101 + . alignment_id 3 ; Query AmOr73 ; Align 238635 298 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr73 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 295 -> 359 Target range: 305624 -> 305816 296 : SerAsnLysValSerAspAlaIleTyrGluMetAspTrpThrIleLeuProSerAsnV : 315 |||!:!!..|||.!! :!! !!:! !!!:..!||| ! !||||||!!!!!.. SerSerSerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysT 305625 : AGCAGTAGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGA : 305682 316 : alMetLysAspLeuLeuLeuValIleAlaArgSerLysLysProValLysIleThrSe : 334 .!!!: ! ! !|||:!!|||:!!||||||! !|||!..!!.|||!.!||||||!:!:! hrIleHisGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAl 305683 : CGATACATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGC : 305739 335 : rGlyGlnIlePheIleLeuSerThrGluSerPheMetLysIleMetLysIleSerTyr : 353 !|||:!!:!! !! !|||||| !...!!!||| !!.:!:! ! !...||| aGlyLysValValAspLeuSerLeuSerThrPheGlyAsnValSerTyrTyrGlnTyr 305740 : TGGTAAAGTAGTTGATTTATCTTTATCCACATTTGGAAACGTGAGTTACTATcaatat : 305796 354 : SerSerPheAsnIleLeu : 359 |||:::...:::|||::: SerAsnIleSerIleVal 305797 : tccaatatttcaattgtt : 305816 vulgar: AmOr73 295 359 . KQ414889.1 305624 305816 + 100 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305625 305816 100 + . gene_id 4 ; sequence AmOr73 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305625 305816 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305816 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305625 305816 100 + . alignment_id 4 ; Query AmOr73 ; Align 305625 296 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr92PSE Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 1081 Query range: 2 -> 402 Target range: 1710209 -> 1713330 3 : PheLeuGluAsnAspValAlaValSerLeuThrSerIlePheMetLysPheValGl : 21 ||| ! :!!|||:!!!.! !!|||:!!||||||!!:|||:!!|||.!.:!!|| PheLysThrAspAspLeuGlyPheSerValThrSerMetPheValLysMetIleGl 1710210 : TTCAAGACTGACGACTTAGGTTTCAGCGTGACTTCGATGTTCGTGAAAATGATCGG : 1710264 22 : yIleTrpMetUnk<-><->GlnTyrGlnGlnArgMetArgAsnIleMetValAlaT : 38 |:!:||||||... |||!:!:!!|||!.!:!:||||||:!:! !:!! !| yLeuTrpMetAlaLysAsnGlnPheGluGlnHisValArgAsnValThrLeuPheT 1710265 : ATTGTGGATGGCGAAAAATCAGTTCGAGCAACATGTCAGAAACGTGACGTTGTTCT : 1710321 39 : yrAsnValIleAlaIlePhePheAlaLeuTrpIleGlnThrMetAspMetTyrHis : 56 ||... ... ::: |||!.!!!!!:::!::!!.!!! !:!!:!!|||||| yrThrPhePhePheValSerPheGlyPheTyrValGluAlaThrAsnLeuTyrHis 1710322 : ACacattcttcttcgtttccttcGGATTCTACGTGGAAGCTACGAACCTGTACCAC : 1710375 57 : SerTrpGlyAsnIleArg >>>> Target Intron 1 >>>> AlaCysLeu : 65 |||||||||:!!:!!!!! 468 bp ! ! ||| SerTrpGlyAspLeuSer++ ++AspThrLeu 1710376 : TCGTGGGGCGATCTCAGCgt.........................agGACACACTG : 1710870 66 : PheSerThrSerAsnThrLeuSerLeuIleLeuProLeuLeuLysIlePheIleLe : 84 |||..!! !!!!!.! !||||||:!!|||:!!||| !:!!||||||.!!||||| PheAspIleCysThrLeuLeuSerValIleMetProAlaIleLysIleIleIleLe 1710871 : TTCGACATATGCACTCTTCTGTCGGTGATAATGCCCGCTATCAAAATAATCATCCT : 1710927 85 : uLeuCysHisLysGlnAspPhePheArgLeuValLeuTyrMetLysArgAsnPheL : 103 |!!! !:!!|||:!!!!:||||||||||||:!!:!!|||! :!!|||.!.|||: uPheIleAsnLysGluGluPhePheArgLeuIleValTyrThrGluArgGlnPheM 1710928 : GTTTATCAACAAGGAGGAGTTTTTCCGTTTGATCGTGTACACAGAGCGACAATTCA : 1710984 104 : eu<->UnkAsnTyrAspAspHisGluArgLysIleValIleGlyCysAsnGlnLys : 120 !! :!!|||:!!!!: !!|||||||||||||||.!!! !|||!!.!:: ! etAsnGlyAspTyrAsnGluAspGluArgLysIleValPheAspCysLysArgLeu 1710985 : TGAACGGGGATTACAACGAGGACGAGAGGAAGATTGTGTTCGATTGTAAACGCCTG : 1711038 121 : CysThrPhePheIleCysPhePheThrPheLeuThrIleAlaThrThrAlaSerTy : 139 ||||||||||||! !||||||.!!:!!! !:!!|||:!!:!! !..! !||||| CysThrPhePheThrCysPheLeuSerSerValThrLeuSerCysValLeuSerTy 1711039 : TGTACATTCTTCACTTGTTTCCTCTCATCTGTGACTTTATCGTGCGTTCTCTCTTA : 1711095 140 : rMetValIleProLeuIle{V} >>>> Target Intron 2 >>>> {al}A : 147 |:!:|||! !|||:!! !{:} 119 bp {!!}| rValValThrProIleTyr{M}++ ++{et}A 1711096 : CGTCGTCACTCCAATTTAC{A}gt.........................ag{TG}A : 1711238 148 : snIleGlyLysAsnGluSerAspArgValLeuProPheAsnMetTrpValAsnLeu : 165 ||||||||!:!|||||||||||||||:!!|||||||||!!.||||||:!!:!!:!! snIleGlyArgAsnGluSerAspArgIleLeuProPheLysMetTrpIleAspIle 1711239 : ATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTGGATTGATATA : 1711292 166 : ProLeuSerMetThrProTyrPheGluIleSerPheValLeuZed >>>> Targ : 181 ||| !|||||||||||||||||||||||| |||...|||::: ProThrSerMetThrProTyrPheGluIlePhePheThrLeuGln++ 1711293 : CCGACATCGATGACACcgtattttgaaatattcttcaccTTACAGgt......... : 1711342 182 : et Intron 3 >>>> ValLeuSerLeuTyrGlnIleAlaValSerTyrPheCy : 193 546 bp ||||||||| !|||||||||!.!||||||||| !|| ++ValLeuSerAlaTyrGlnIleGlyValSerTyrGlyCy 1711343 : ................agGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGGTTG : 1711922 194 : sPheAspAsnPheLeuCysIleMetAsnPheHisValAlaGlyGlnPheLysValL : 212 |||||||||| !!|||||||||||||||.!.|||:!!||| !||||||::!:!!| sPheAspAsnValLeuCysIleMetAsnLeuHisLeuAlaThrGlnPheArgIleL 1711923 : CTTCGACAACGTTCTATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAATAC : 1711979 213 : euGlnHisArgIleSerThrIleAlaAspLeuThrIleLys<->ThrGluGluLys : 229 |||||||||||:!: !!.!||| !! !|||! !! !||| ||| !|||||| euGlnHisArgLeuValAsnIleAsnGlyLeuLysSerLysGlnThrProGluLys 1711980 : TGCAACATAGACTGGTGAATATAAACGGTCTGAAGAGCAAACAGACACCGGAGAAA : 1712033 230 : LysGluLysLeuIleIleAspSerLeuHisPheSerAsnLysCysTyrThrThrPh : 248 |||! !! !|||||||||||| !.!.|||:!!:!!!!.! !||| !..!|| GlyGluThrSerIleIleAspSerThrGluPheAlaAspAsnSerTyrAspValPh 1712034 : GGTGAAACGTCGATTATAGATTCGACAGAATTTGCGGATAACTCTTACGACGTTTT : 1712090 249 : eLysLysTyrIleArgGlnHisGlnThrLeuIleAlaTyrCysArgLysIleGluV : 267 ||||!:!! !:!!||||||||||||:!!|||!!:|||!:!|||...|||:::||| eLysArgCysValArgGlnHisGlnSerLeuMetAlaPheCysGluLysLeuGluG 1712091 : CAAAAGATGCGTTCGTCAACATCAATCTCTGATGGCTTTCTgcgagaaactcgaag : 1712147 268 : alValPheAsnTrpIleValLeuGluGlnValLeuMetPheSerLeuLeuIleCys : 285 :::|||!:! !|||:!!|||! !|||:!!|||:!!||||||:!!!!!!!:||| luMetPheSerMetIleIleLeuGlyGlnLeuLeuValPheSerIlePheMetCys 1712148 : aaatgTTCAGTATGATTATACTGGGGCAATTGTTAGTGTTCAGTATTTTTATGTGT : 1712201 286 : LeuAspGlyTyrGlnIleLeuMet >>>> Target Intron 4 >>>> Ala : 294 ||||||! !! !|||:!!|||:!! 142 bp !! LeuAspValCysGlnValLeuLeu++ ++Pro 1712202 : CTCGACGTGTGCCAAGTACTTCTGgt.........................agCCA : 1712370 295 : AspGluAspIleLysThrArgSerIlePheSerPheHisIleLeuSerCysLeuCy : 313 ! !! !..!:!: ! !!:!! ||||||:::||||||::! !.!!|||:!!|| GlyAlaSerValGlyLysGlnMetIlePheThrPheHisLeuAlaGlyCysMetCy 1712371 : GGTGCATCTGTGGGTAAACAGAtgattttcacgtttcacctAGCGGGATGTATGTG : 1712427 314 : sGlnLeuLeuMetPheSerTyrSerCysAspCysIleLeuArgGluSerValSerV : 332 ||||||||||||||||!!!||||||||||||||||||:!!! !||||||:!!!:!| sGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleThrGluSerLeuAsnV 1712428 : TCAATTGCTGATGTTTACGTACAGCTGCGATTGTATAATAACGGAAAGTTTGAACG : 1712484 333 : alAlaThrAlaAlaTyrGluGlyProTrpThrLeuProProMetThrIleSerGly : 350 ||.!! !|||!.!|||!!:||||||||| !!! ! !||||||!:!! !!!||| alThrGluAlaValTyrAspGlyProTrpProArgLeuProMetSerThrArgGly 1712485 : TGACGGAAGCGGTGTACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGA : 1712538 351 : ArgMetMetArgLysAspLeuIleValValIleMetArgAlaSerIleProCysCy : 369 ||||||!!:|||||||||||||||:!!||||||!!:|||:!!!!!:!!|||||||| ArgMetIleArgLysAspLeuIleLeuValIleIleArgSerArgValProCysCy 1712539 : AGAATGATAAGGAAGGATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTG : 1712595 370 : sLeuSerGlyLysGlyTyrPheIleValSerLeuGluThrTyrThrSer >>>> : 386 ||||!!!!.!!:!|||!:!|||:!!:!!||||||||||||||||||!.! sLeuThrAlaArgGlyPhePheValIleSerLeuGluThrTyrThrLys++ 1712596 : CTTGACCGCCAGAGGATTCTTCGTAATATCTTTGGAAACGTATACGAAGgt..... : 1712648 387 : Target Intron 5 >>>> ValLeuSerThrAlaAlaSerTyrPheThrLeuL : 397 634 bp |||:!!|||||||||!.!|||||||||||||||| ++ValIleSerThrAlaValSerTyrPheThrLeuL 1712649 : ....................agGTTATAAGTACAGCAGTGTCGTACTTCACACTGT : 1713313 398 : euArgAsnAsnIleGlu : 402 |||||.!...!|||||| euArgGlnArgIleGlu 1713314 : TAAGGCAACGTATAGAG : 1713330 vulgar: AmOr92PSE 2 402 . KQ414915.1 1710209 1713330 + 1081 M 23 69 G 0 6 M 37 111 5 0 2 I 0 464 3 0 2 M 41 123 G 0 3 M 42 126 S 0 1 5 0 2 I 0 115 3 0 2 S 1 2 M 34 102 5 0 2 I 0 542 3 0 2 M 45 135 G 0 3 M 68 204 5 0 2 I 0 138 3 0 2 M 92 276 5 0 2 I 0 630 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1710210 1713330 1081 + . gene_id 1 ; sequence AmOr92PSE ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1710210 1710395 . + . KQ414915.1 exonerate:protein2genome:local exon 1710210 1710395 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1710396 1710397 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1710396 1710863 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1710862 1710863 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1710864 1711116 . + . KQ414915.1 exonerate:protein2genome:local exon 1710864 1711116 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711117 1711118 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711117 1711235 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1711234 1711235 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711236 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711236 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712227 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712228 1712229 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712228 1712369 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1712368 1712369 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1712370 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712370 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 5 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 5 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 4 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713330 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713330 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1710210 1713330 1081 + . alignment_id 1 ; Query AmOr92PSE ; Align 1710210 3 69 ; Align 1710285 26 111 ; Align 1710864 63 123 ; Align 1710990 104 126 ; Align 1711238 147 102 ; Align 1711886 181 135 ; Align 1712024 226 204 ; Align 1712370 294 276 ; Align 1713280 386 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr92PSE Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 651 Query range: 146 -> 398 Target range: 1707001 -> 1709234 147 : AsnIleGlyLysAsnGluSerAspArgValLeuProPheAsnMetTrpValAsnLe : 165 !::||||||||||||||||||||||||:!!||| ! !!|||.!.|||:!!:!!!! SerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAspPh 1707002 : AgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGACTT : 1707056 166 : uProLeuSerMetThrProTyrPheGluIleSerPheValLeuZed >>>> Tar : 181 !||| !!!!||||||||||||!:!||||||! !|||..!! !::: eProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707057 : TCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt........ : 1707106 182 : get Intron 1 >>>> ValLeuSerLeuTyrGlnIleAlaValSerTyrPheC : 193 276 bp |||!!!! !:!! ! :!!..!:!!||||||.!!| ++ValPheIleValMetTyrValCysIleSerTyrLeuC 1707107 : .................agGTTTTTATCGTAATGTACGTTTGCATAAGCTACCTTT : 1707416 194 : ysPheAspAsnPheLeuCysIleMetAsnPheHisValAlaGlyGlnPheLysVal : 211 ||.!!|||||||||||||||!!:!!:|||.!.|||..!||| !||||||::!:!! ysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIle 1707417 : GTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATA : 1707470 212 : LeuGlnHisArgIleSerThrIleAlaAspLeuThrIleLysThrGluGluLysLy : 230 ||||||:!!|||:!:|||!.!:!:..!! ! .!!.!.|||:::!. LeuGlnTyrArgLeuSerAsnValCysGly------------AlaAsnGluArgSe 1707471 : TTGCAATACAGACTGTCGAATGTGTGCGGT------------GCAAACGAACGTAg : 1707515 231 : sGluLysLeuIleIleAspSerLeuHisPheSerAsnLysCysTyrThrThrPheL : 249 .:::|||::: :::! ! ! !|||:!!:!!||||||.!!! !|||| rAspLysIleSerLysLysThrProSerAsnSerAspGluCysTyrAlaLysPheL 1707516 : cgataaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCA : 1707572 250 : ysLysTyrIleArgGlnHisGlnThrLeuIleAlaTyrCysArgLysIleGluVal : 267 ||!!.! !|||!:!|||||||||.!!||||||! !||||||!.!:!!:!!:!!! ! ysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGlu 1707573 : AAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAG : 1707626 268 : ValPheAsnTrpIleValLeuGluGlnValLeuMetPheSerLeuLeuIleCysLe : 286 ||||||..!! .!!||||||! !|||||||||:!:||||||||||||!!:||||| ValPheGlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLe 1707627 : GTGTTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCT : 1707683 287 : uAspGlyTyrGlnIleLeuMet >>>> Target Intron 2 >>>> AlaAs : 295 |||||||||| :!::!!||| 457 bp ! !|| uAspGlyTyr---LeuValMet++ ++GluAs 1707684 : CGATGGATAT---TTGGTGATGgt.........................agGAAGA : 1708164 296 : pGluAspIleLysThrArgSerIlePheSerPheHisIleLeuSerCysLeuCysG : 314 | !|||! ! !||| !! !|||! !||||||:!! !.!!|||||||||| pThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysG 1708165 : TACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCC : 1708221 315 : lnLeuLeuMetPheSerTyrSerCysAspCysIleLeuArgGluSerValSerVal : 332 ||||||||||||||!!!|||||||||||||||:!::!!|||||||||:!!!:!||| lnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnVal 1708222 : AACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTG : 1708275 333 : AlaThrAlaAlaTyrGluGlyProTrpThrLeuProProMetThrIleSerGlyAr : 351 |||!.!||| !|||!!: !! !!|||! !! ! !|||||| !! !|||||||| AlaAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyAr 1708276 : GCCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCG : 1708332 352 : gMetMetArgLysAspLeuIleValValIleMetArgAlaSerIleProCysCysL : 370 ||||:!!||||||||||||! ! !!|||||| |||:!!!!!:!!|||||||||| gMetLeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysL 1708333 : AATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTC : 1708389 371 : euSerGlyLysGlyTyrPheIleValSerLeuGluThrTyrThrSer >>>> Ta : 386 ||!!!!.! |||!:!||| !|||||||||||||||||||||||| euThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708390 : TCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt....... : 1708439 387 : rget Intron 3 >>>> ValLeuSerThrAlaAlaSerTyrPheThrLeuLeu : 397 759 bp :!!||||||||||||||||||||||||||||||||| ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeu 1708440 : ..................agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTA : 1709229 398 : Arg : 398 ||| Arg 1709230 : CGA : 1709234 vulgar: AmOr92PSE 146 398 . KQ414915.1 1707001 1709234 + 651 M 34 102 5 0 2 I 0 272 3 0 2 M 41 123 G 4 0 M 64 192 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707002 1709234 651 + . gene_id 2 ; sequence AmOr92PSE ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1707002 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707002 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 5 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709234 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709234 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1707002 1709234 651 + . alignment_id 2 ; Query AmOr92PSE ; Align 1707002 147 102 ; Align 1707380 181 123 ; Align 1707503 226 192 ; Align 1707695 291 9 ; Align 1708161 294 276 ; Align 1709196 386 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr92PSE Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 555 Query range: 140 -> 403 Target range: 1694337 -> 1696266 141 : ValIleProLeuIleValAsnIleGlyLysAsnGluSerAspArgValLeuProPh : 159 |||.!! !!!!:!!!.!|||:!!|||||||||:!!|||!!:|||:!!|||||||| ValPheTyrPheLeuAlaAsnValGlyLysAsnGlnSerGluArgMetLeuProPh 1694338 : GTGTTCTATTTTTTAGCAAATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTT : 1694392 160 : eAsnMetTrpValAsnLeuProLeuSerMetThrProTyrPheGluIleSerPheV : 178 |||||||||||||:!!!!!||| !.!!:!!:!!||||||!:!|||:!! !|||: eAsnMetTrpValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheI 1694393 : CAACATGTGGGTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCA : 1694449 179 : alLeuZedVal{L} >>>> Target Intron 1 >>>> {eu}SerLeuTyr : 185 !!:!!:::|||{:} 409 bp {!!}!!!:!!||| leIleGlnVal{I}+- +-{le}CysValTyr 1694450 : TCATACAGGTA{A}gc.........................ac{TT}TGCGTGTAC : 1694879 186 : GlnIleAlaValSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnPheHi : 204 !!.:!!!.!:!!!!!|||.!.||||||||||||.!!||| !!:!!:!!|||.!!|| HisValGlyIleCysTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHi 1694880 : CATGTCGGTATATGTTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCA : 1694936 205 : sValAlaGlyGlnPheLysValLeuGlnHisArgIleSerThrIleAlaAspLeuT : 223 ||||||| !||||||::::!!||||||:!!|||.!!! !!.!:!:::!:!!:!!! sValAlaThrGlnPheArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValI 1694937 : CGTGGCCACTCAATTTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAA : 1694993 224 : hrIleLysThrGluGluLysLysGluLysLeuIleIleAspSerLeuHisPheSer : 241 ! ||| ! !!!: :::||| ||| ||| ! ! !:!!|||!!! leGluLysGlnThrAspGlyArgGlu---LeuGluIleGlyTyrThrAsnPheThr 1694994 : TTGAGAAGCAAACAGACGGTcgagaa---ttggaaattggtTACACAAATTTCACA : 1695044 242 : AsnLysCysTyrThrThrPheLysLysTyrIleArgGlnHisGlnThrLeuIleAl : 260 ! ! !!||| ! !!!.|||!..! !:!:!:! ! ||||||.!!|||! !!. ValAspSerTyrLeuGlnLeuLysSerCysValGlnTyrHisGlnAlaLeuThrGl 1695045 : GTCGATAGTTACTTACAATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGG : 1695101 261 : aTyrCysArgLysIleGluValValPheAsnTrpIleValLeuGluGlnValLeuM : 279 !||||||!:!|||:!:||| !:!!|||:::! !:!!||||||! !|||||||||. yTyrCysLysLysLeuGluAsnIlePheSerLeuLeuValLeuGlyGlnValLeuP 1695102 : CTATTGCAAAAAGTTGGAGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTT : 1695158 280 : etPheSerLeuLeuIleCysLeuAspGlyTyrGlnIleLeuMet >>>> Targe : 294 !..!.:!!:!!:!!:!!||||||! |||||||||:!!!!!:!! heLeuAlaMetValLeuCysLeuValGlyTyrGlnLeuPheLeu++ 1695159 : TCCTAGCCATGGTACTTTGCCTCGTGGGATATCAGCTATTTCTGgt.......... : 1695205 295 : t Intron 2 >>>> AlaAspGluAspIleLysThrArgSerIlePheSerPhe : 306 415 bp .!!|||..! !..!! !!.! ! !!!. !.!! ++ThrAspSerProProSerArgAsnValGlyLeuValLeu 1695206 : ...............agACAGACTCACCACCTTCGAGAAACGTCGGATTGGTACTC : 1695654 307 : HisIleLeuSerCysLeuCysGlnLeuLeuMetPheSerTyrSerCysAspCysIl : 325 :!!:!: !.!! !||||||||||||!!!||||||!!!|||||||||||| !!:! AsnLeuAlaGlyThrLeuCysGlnLeuPheMetPheThrTyrSerCysAspGlyLe 1695655 : AACCTGGCAGGCACTTTGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTT : 1695711 326 : eLeuArgGluSerValSerValAlaThrAlaAlaTyrGluGlyProTrpThrLeuP : 344 : !|||||||||:!!..!|||::!! !|||!.!!:!! ! !!||||||.!! !! uThrArgGluSerMetAspValSerArgAlaValPheAlaArgProTrpAlaAsnL 1695712 : GACAAGAGAGAGCATGGACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATC : 1695768 345 : roProMetThrIleSerGlyArgMetMetArgLysAspLeuIleValValIleMet : 362 !|||||| !! !!:!|||!:!! :!!|||:!!..!:!!:!!:!!||||||||| euProMetAspArgAsnGlyLysSerValArgGlnSerMetLeuMetValIleMet 1695769 : TGCCAATGGATAGAAATGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATG : 1695822 363 : ArgAlaSerIleProCysCysLeuSerGlyLysGlyTyrPheIleValSerLeuGl : 381 |||:!!!:!! !|||||||||!!!!.!!..|||!:!||| !||||||||||| ArgSerAsnArgCysCysCysLeuThrAlaSerGlyPhePheProValSerLeuGl 1695823 : AGGTCGAACAGGTGTTGCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGA : 1695879 382 : uThrTyrThrSer >>>> Target Intron 3 >>>> ValLeuSerThrAl : 390 ||||||||||.!! 319 bp |||||||||||||| uThrTyrThrGly++ ++ValLeuSerThrAl 1695880 : GACTTACACTGGGgt.........................agGTCCTCAGCACTGC : 1696225 391 : aAlaSerTyrPheThrLeuLeuArgAsnAsnIleGluSer : 403 | !|||||||||||||||||||||.!.:::! ! !||| aMetSerTyrPheThrLeuLeuArgGlnSerThrMetSer 1696226 : AATGTCATACTTTACACTACTGAGACAATCGACTATGAGC : 1696266 vulgar: AmOr92PSE 140 403 . KQ414915.1 1694337 1696266 + 555 M 41 123 S 0 1 5 0 2 I 0 405 3 0 2 S 1 2 M 49 147 G 1 0 M 61 183 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694338 1696266 555 + . gene_id 3 ; sequence AmOr92PSE ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694338 1694461 . + . KQ414915.1 exonerate:protein2genome:local exon 1694338 1694461 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694462 1694463 . + . intron_id 1 ; splice_site "GC" KQ414915.1 exonerate:protein2genome:local intron 1694462 1694870 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694869 1694870 . + . intron_id 0 ; splice_site "AC" KQ414915.1 exonerate:protein2genome:local cds 1694871 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694871 1695202 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 2 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696266 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696266 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694338 1696266 555 + . alignment_id 3 ; Query AmOr92PSE ; Align 1694338 141 123 ; Align 1694873 183 147 ; Align 1695020 233 183 ; Align 1695618 294 276 ; Align 1696213 386 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr92PSE Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 544 Query range: 63 -> 293 Target range: 1698550 -> 1699971 64 : CysLeuPheSerThrSerAsnThrLeuSerLeuIleLeuProLeuLeuLysIlePh : 82 ||| !!:!!!!.!!!!!|||! !|||!!!||||||:!! !|||||||||:!:|| CysAlaTyrThrAlaCysAsnIleLeuCysLeuIleMetValLeuLeuLysLeuPh 1698551 : TGTGCTTACACCGCTTGTAACATTCTCTGCCTGATTATGGTACTGTTAAAGCTGTT : 1698605 83 : eIleLeuLeuCysHisLysGlnAspPhePheArgLeuValLeuTyrMetLysArgA : 101 |:!!:!!!!! |||!:!:!!!!:|||.!!..!|||::::::|||||| :::| eValValPheIleHisArgLysGluPheIleGluLeuLeuValTyrMetTyrLysA 1698606 : CGTTGTATTCATACACAGGAAAGAATTCATCGAACTgcttgtatatatgtacaaaa : 1698662 102 : snPheLeu<->UnkAsnTyrAspAspHisGluArgLysIleValIleGlyCysAsn : 118 ||||| ||||||||| !:!!|||! ! !:!::!! !! !|||!.. snPheTrpHisLeuAsnTyrAspCysAsnGluLeuLeuLeuLeuGlnAspCysArg 1698663 : atttttggcACCTCAATTACGATTGCAACGAACTACTACTGCTGCAAGACTGCAGA : 1698716 119 : GlnLysCysThrPhePheIleCysPhePheThrPheLeuThrIleAlaThrThrAl : 137 ::!! !!|||.!.! !||| !!..!!!.!|||! !.!! !!.!|||! !!. ArgIleSerThrIleCysIleThrLeuIleAsnPheCysAlaGlnGlyThrIleVa 1698717 : AGAATTAGCACTATATGTATCACGTTGATTAACTTCTGTGCTCAAGGCACAATTGT : 1698773 138 : aSerTyrMetValIleProLeuIle{V} >>>> Target Intron 1 >>>> : 146 !||||||:!!:!!! !|||:!!|||{!} 232 bp lSerTyrValLeuThrProIleIle{A}++ + 1698774 : CAGCTACGTGCTAACACCTATTATA{G}gt.........................a : 1699031 147 : {al}AsnIleGlyLysAsnGluSerAspArgValLeuProPheAsnMetTrpVal : 163 {.!}|||||||||:::|||...||||||||||||||||||||||||||||||||| +{la}AsnIleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTrpVal 1699032 : g{ca}aatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTGGGTT : 1699083 164 : AsnLeuProLeuSerMetThrProTyrPheGluIleSerPheValLeuZed >>> : 181 :!!||||||||||||:!!:!!||| !:!|||||| !|||||||||::: AspLeuProLeuSerValSerProThrTyrGluIleValPheValLeuGln++ 1699084 : GATTTGCCGCTGTCTGTGTCACCAACGTACGAAATAGTGTTCGTGCTTCAGgt... : 1699139 182 : > Target Intron 2 >>>> ValLeuSerLeuTyrGlnIleAlaValSerTy : 191 499 bp |||||||||||||||!!.:!!!.!|||!!!|| ++ValLeuSerLeuTyrHisValGlyValCysTy 1699140 : ......................agGTTCTGTCTTTGTACCACGTTGGTGTATGTTA : 1699666 192 : rPheCysPheAspAsnPheLeuCysIleMetAsnPheHisValAlaGlyGlnPheL : 210 |.!!||||||||||||.!!||||||:!:||||||.!.|||!.!||| !||||||: rIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheA 1699667 : CATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTC : 1699723 211 : ysValLeuGlnHisArgIleSerThrIleAlaAspLeuThrIleLysThrGluGlu : 228 :::!!||||||:!!|||:!!|||!.!:!:!.!||| !!.!! ||| !! !!!: rgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAsp 1699724 : GTATACTGCAATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGAT : 1699777 229 : LysLysGluLysLeuIleIleAspSerLeuHisPheSerAsnLysCysTyrThrTh : 247 ! !!.|||... ! ! ! ||| !.!|||:!!.!.!!.||||||! !.! AspAsnGluSerSerAlaAlaLeuSer---ArgPheAlaGluAsnCysTyrLysAl 1699778 : GACAATGAATCCAGCGCAGCTCTGTCT---CGTTTCGCGGAGAACTGTTATAAGGC : 1699831 248 : rPheLysLysTyrIleArgGlnHisGlnThrLeuIleAlaTyrCysArgLysIleG : 266 !||||||!!.! !:!!||||||||||||!.!! !|||.!!||||||!.!!:!:!:. aPheLysAsnCysValArgGlnHisGlnAsnHisIleThrTyrCysHisArgLeuA 1699832 : GTTTAAAAATTGCGTACGACAACATCAGAATCATATCACGTACTGTCACAGATTGA : 1699888 267 : luValValPheAsnTrpIleValLeuGluGlnValLeuMetPheSerLeuLeuIle : 284 !.! !:!!|||!.. |||||||||! !!!.:!!|||:!:||||||||||||||| snGluIlePheThrValIleValLeuGlyHisIleLeuValPheSerLeuLeuIle 1699889 : ACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATA : 1699942 285 : CysLeuAspGlyTyrGlnIleLeuMet : 293 ||||||! !|||!:!|||:!:|||:!: CysLeuValGlyPheGlnValLeuVal 1699943 : TGTCTGGTTGGATTCCAAGTGCTCGTA : 1699971 vulgar: AmOr92PSE 63 293 . KQ414915.1 1698550 1699971 + 544 M 40 120 G 0 3 M 42 126 S 0 1 5 0 2 I 0 228 3 0 2 S 1 2 M 34 102 5 0 2 I 0 495 3 0 2 M 57 171 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1698551 1699971 544 + . gene_id 4 ; sequence AmOr92PSE ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1698551 1698800 . + . KQ414915.1 exonerate:protein2genome:local exon 1698551 1698800 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1698801 1698802 . + . intron_id 1 ; splice_site "Gt" KQ414915.1 exonerate:protein2genome:local intron 1698801 1699032 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699031 1699032 . + . intron_id 0 ; splice_site "Ag" KQ414915.1 exonerate:protein2genome:local cds 1699033 1699136 . + . KQ414915.1 exonerate:protein2genome:local exon 1699033 1699136 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699137 1699138 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699137 1699635 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1699634 1699635 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699636 1699971 . + . KQ414915.1 exonerate:protein2genome:local exon 1699636 1699971 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1698551 1699971 544 + . alignment_id 4 ; Query AmOr92PSE ; Align 1698551 64 120 ; Align 1698674 104 126 ; Align 1699035 147 102 ; Align 1699636 181 171 ; Align 1699807 239 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr92PSE Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 475 Query range: 179 -> 392 Target range: 1702013 -> 1703256 180 : ZedValLeuSerLeuTyrGlnIleAlaValSerTyrPheCysPheAspAsnPheLe : 198 :::|||||||||||||||!!.:!!!.!|||!!!|||.!!||||||||||||.!!|| GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 199 : uCysIleMetAsnPheHisValAlaGlyGlnPheLysValLeuGlnHisArgIleS : 217 ||||:!:||||||.!.|||!.!||| !||||||::::!!||||||:!!|||:!!| uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 218 : erThrIleAlaAspLeuThrIleLysThrGluGluLysLysGluLysLeuIleIle : 235 ||!.!:!:!.!||| !!.!! ||| !! !!!: ! !!.|||... ! ! ! erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1702179 236 : AspSerLeuHisPheSerAsnLysCysTyrThrThrPheLysLysTyrIleArgGl : 254 ||| !.!|||:!!.!.!!.||||||! !.!!||||||!!.! !:!!||||| LeuSer---ArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGl 1702180 : CTGTCT---CGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACA : 1702233 255 : nHisGlnThrLeuIleAlaTyrCysArgLysIleGluValValPheAsnTrpIleV : 273 |||||||!.!! !|||.!!||||||!.!!:!:!:.!.! !:!!|||!.. |||| nHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleV 1702234 : ACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTG : 1702290 274 : alLeuGluGlnValLeuMetPheSerLeuLeuIleCysLeuAspGlyTyrGlnIle : 291 |||||! !!!.:!!|||:!:|||||||||||||||||||||! !|||!:!|||:!: alLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnVal 1702291 : TACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTG : 1702344 292 : LeuMet >>>> Target Intron 1 >>>> AlaAspGluAspIleLysThr : 300 |||:!! 607 bp .!! !! ! ! ! !! ! LeuVal++ -+ThrProValThrProAlaArg 1702345 : CTCGTGgt.........................ggACACCTGTGACTCCAGCGAGG : 1702978 301 : ArgSerIlePheSerPheHisIleLeuSerCysLeuCysGlnLeuLeuMetPheSe : 319 ||| !! !||| !|||||||||:!!.!! !!|||||||||||||||:!:|||!! ArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLeuLeuPheTh 1702979 : CGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATTGCTATTTAC : 1703035 320 : rTyrSerCysAspCysIleLeuArgGluSerValSerValAlaThrAlaAlaTyrG : 338 !|||||||||||| !!:!::!!..!||||||..!!:!:!!!.!|||||| !||| rTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaIleTyrL 1703036 : CTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGATATACC : 1703092 339 : luGlyProTrpThrLeuProProMetThrIleSerGlyArgMetMetArgLysAsp : 356 |||||||||! !! !! !|||||| !! !:!!||||||! !:!!|||!:!||| euGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArgArgAsp 1703093 : TCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGAAGAGAC : 1703146 357 : LeuIleValValIleMetArgAlaSerIleProCysCysLeuSerGlyLysGlyTy : 375 |||! !:!!||||||:!:|||:!!!!!! ! !! !!||||||!!!!.!!..|||!: LeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSerGlyPh 1703147 : TTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAGCGGATT : 1703203 376 : rPheIleValSerLeuGluThrTyrThrSerValLeuSerThrAlaAlaSer : 392 !||| !|||||||||||||||! !|||!!!|||!!!!:! !:!! !||| ePheProValSerLeuGluThrCysThrThrValPheAsnPheSerPheSer 1703204 : CTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATTTCTCATTCTCT : 1703256 vulgar: AmOr92PSE 179 392 . KQ414915.1 1702013 1703256 + 475 M 58 174 G 1 0 M 55 165 5 0 2 I 0 603 3 0 2 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1703256 475 + . gene_id 5 ; sequence AmOr92PSE ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702014 1702352 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702352 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1702353 1702354 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1702353 1702959 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702958 1702959 . + . intron_id 0 ; splice_site "GG" KQ414915.1 exonerate:protein2genome:local cds 1702960 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1702960 1703256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1703256 475 + . alignment_id 5 ; Query AmOr92PSE ; Align 1702014 180 174 ; Align 1702188 239 165 ; Align 1702960 294 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr92PSE Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 268 Query range: 63 -> 202 Target range: 1687380 -> 1689991 64 : CysLeuPheSerThrSerAsnThrLeuSerLeuIleLeuProLeuLeuLysIlePh : 82 |||:!!||| !|||!!!|||||||||!!!:!!:!!||| !!:!!!!!|||||||| CysIlePheLeuThrCysAsnThrLeuCysIleLeuLeuAlaIlePheLysIlePh 1687381 : TGCATCTTTCTGACTTGCAACACACTGTGCATTCTTCTGGCGATATTTAAGATTTT : 1687435 83 : eIleLeuLeuCysHisLysGlnAspPhePheArgLeuValLeuTyrMetLysArgA : 101 ||||||| ! !|||!:! !!!:||| ..!:!!||||||||| !:!!!:!: eIleLeuSerAsnHisArgThrGluPheLysGluIleValLeuTyrAlaGlnLysH 1687436 : CATACTAAGCAATCACAGAACGGAATTCAAGGAGATAGTCTTGTACGCGCAGAAGC : 1687492 102 : snPheLeu<->UnkAsnTyrAspAspHisGluArgLysIleValIleGlyCysAsn : 118 !!|||! ! ||||||..! ! .!.|||||| !:!! ! !! !|||.!. isPheTrpHisAspAsnTyrSerLysGluGluArgValLeuTyrGlyAspCysGln 1687493 : ATTTTTGGCATGATAATTACAGCAAAGAGGAGAGGGTGCTTTATGGAGATTGCCAG : 1687546 119 : GlnLysCysThrPhePheIleCysPhePheThrPheLeuThrIleAlaThrThrAl : 137 ::! |||! !.!.!:::!! .!..!. !||||||||| !|||:!! !!. ArgPheCysLysLeuTrpValIleLeuIleCysPheLeuThrGlnAlaSerLeuVa 1687547 : AGGTTCTGCAAACTATGGGTCATACTAATATGTTTCCTTACGCAAGCCTCTTTAGT : 1687603 138 : aSerTyrMetValIleProLeuIle{V} >>>> Target Intron 1 >>>> : 146 !! !|||.!.|||! !||||||! !{!} 424 bp lPheTyrPheValThrProLeuThr{A}++ + 1687604 : GTTCTACTTTGTCACACCACTCACT{G}gt.........................a : 1688053 147 : {al}AsnIleGlyLysAsnGluSerAspArgValLeuProPheAsnMetTrpVal : 163 {.!}|||!!:.!!::!|||:!!|||||||||||||||||||||!!.||||||||| +{la}AsnMetSerArgAsnLysSerAspArgValLeuProPheLysMetTrpVal 1688054 : g{CA}AATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTGGGTC : 1688105 164 : AsnLeuProLeuSerMetThrProTyrPheGluIleSerPheValLeuZedVal{L : 182 :!!! !||||||||| |||||||||!:!|||:!:! !|||..!!!!:::|||{! AspTrpProLeuSerAspThrProTyrTyrGluLeuMetPheThrPheGlnVal{S 1688106 : GATTGGCCGCTATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAGGTA{T : 1688162 183 : e} >>>> Target Intron 2 >>>> {u}SerLeuTyrGlnIleAlaValS : 190 } 1767 bp {!} ...::: . e}++ ++{r}PhePhePheAlaGluLeuArgL 1688163 : C}gt.........................ag{t}ttttttttcgcggagctacgca : 1689953 191 : erTyrPheCysPheAspAsnPheLeuCysIleMetAsn : 202 ..|||||| ... !..!||||||||||||:!:||| ysTyrPhe***MetIleArgPheLeuCysIleLeuAsn 1689954 : aatatttttgaatgatTCGCTTTTTGTGCATCCTTAAC : 1689991 vulgar: AmOr92PSE 63 202 . KQ414915.1 1687380 1689991 + 268 M 40 120 G 0 3 M 42 126 S 0 1 5 0 2 I 0 420 3 0 2 S 1 2 M 35 105 S 0 2 5 0 2 I 0 1763 3 0 2 S 1 1 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1687381 1689991 268 + . gene_id 6 ; sequence AmOr92PSE ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1687381 1687630 . + . KQ414915.1 exonerate:protein2genome:local exon 1687381 1687630 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1687631 1687632 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1687631 1688054 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1688053 1688054 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1688055 1688163 . + . KQ414915.1 exonerate:protein2genome:local exon 1688055 1688163 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688164 1688165 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688164 1689930 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1689929 1689930 . + . intron_id 1 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1689931 1689991 . + . KQ414915.1 exonerate:protein2genome:local exon 1689931 1689991 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1687381 1689991 268 + . alignment_id 6 ; Query AmOr92PSE ; Align 1687381 64 120 ; Align 1687504 104 126 ; Align 1688057 147 105 ; Align 1689932 183 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr92PSE Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 216 Query range: 146 -> 219 Target range: 1681725 -> 1682067 147 : AsnIleGlyLysAsnGluSerAspArgValLeuProPheAsnMetTrpVal<->As : 164 ||||||||||||!:!!!:..!!!:|||:!!||||||||| .!. ! ||| || AsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAs 1681726 : AACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAA : 1681780 165 : nLeuProLeuSerMetThrProTyrPheGluIleSerPheValLeuZed >>>> : 181 ||||||| !|||:!!|||||||||:::|||||| ||||||:!!::: nLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681781 : CTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt..... : 1681833 182 : Target Intron 1 >>>> ValLeuSerLeuTyrGlnIleAlaValSerTyrP : 192 120 bp ..!||||||:!! !!. !.!:!!!!!!:!! ++ThrLeuSerValValHisSerGlyIleCysPheC 1681834 : ....................agACATTATCTGTGGTGCATTCGGGAATTTGTTTCT : 1681984 193 : heCysPheAspAsnPheLeuCysIleMetAsnPheHisValAlaGlyGlnPheLys : 210 !||||||||||||||||||||||||:!!!:!.!.||||||!.!|||||||||||| ysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLys 1681985 : GTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAG : 1682038 211 : ValLeuGlnHisArgIleSerThrIle : 219 :!!||||||:!!!:!:!!..!|||:!! IleLeuGlnAsnLysLeuGlnThrVal 1682039 : ATTTTACAAAACAAACTCCAAACAGTA : 1682067 vulgar: AmOr92PSE 146 219 . KQ414915.1 1681725 1682067 + 216 M 17 51 G 0 3 M 17 51 5 0 2 I 0 116 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681726 1682067 216 + . gene_id 7 ; sequence AmOr92PSE ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681726 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681726 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682067 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682067 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681726 1682067 216 + . alignment_id 7 ; Query AmOr92PSE ; Align 1681726 147 51 ; Align 1681780 164 51 ; Align 1681951 181 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr92PSE Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 238 -> 293 Target range: 1688487 -> 1688652 239 : HisPheSerAsnLysCysTyrThrThrPheLysLysTyrIleArgGlnHisGlnTh : 257 .!.!:!!!!|||||||||||||||! !.!.! ! ! ! !|||!:!.!.||||||:! GluTyrThrAsnLysCysTyrThrLysLeuIleAspCysIleLysAsnHisGlnSe 1688488 : GAATACACGAACAAATGTTACACCAAGCTGATAGATTGCATCAAAAATCATCAGTC : 1688542 258 : rLeuIleAlaTyrCysArgLysIleGluValValPheAsnTrpIleValLeuGluG : 276 !||||||! !!:!||| !|||:!!||| !|||!:!!..! !! !:!!|||! ! rLeuIleGluPheCysValLysLeuGluAsnValTyrThrLeuThrIleLeuGlyH 1688543 : GTTGATCGAGTTCTGCGTGAAACTCGAGAACGTGTACACGTTGACTATACTCGGCC : 1688599 277 : lnValLeuMetPheSerLeuLeuIleCysLeuAspGlyTyrGlnIleLeuMet : 293 !.:!!:!!:!:||||||||||||!!:|||!!!||| !|||:!!:!!:!!:!! isIleValValPheSerLeuLeuMetCysPheAspThrTyrGluValValLeu 1688600 : ACATAGTGGTCTTCAGCTTGTTGATGTGCTTCGACACGTACGAGGTAGTTCTG : 1688652 vulgar: AmOr92PSE 238 293 . KQ414915.1 1688487 1688652 + 135 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688488 1688652 135 + . gene_id 8 ; sequence AmOr92PSE ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1688488 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688488 1688652 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688488 1688652 135 + . alignment_id 8 ; Query AmOr92PSE ; Align 1688488 239 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr92PSE Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 230 -> 387 Target range: 1677701 -> 1678746 231 : GluLysLeuIleIleAspSerLeuHisPheSerAsnLysCysTyrThrThrPheLy : 249 |||:!!||| ! ! ! ..!:!! !.!...!!!.:!! ! |||:: GluGluLeuTyrAspLysGluIleSerIleGlnLysGlnMetSerGlnLysPheGl 1677702 : GAGGAACTTTACGATAAAGAGATTAGCATACAGAAGCAAATGTCGcagaaattcga : 1677756 250 : sLysTyrIleArgGlnHisGlnThrLeuIleAlaTyrCysArgLysIleGluValV : 268 :||| :!:|||!:!||| ! !||||||! !||| ..!::::::... : uLysCysLeuArgArgHisTyrLeuLeuIleAspTyrValGluGluLeuAsnAsnL 1677757 : gaaatgcTTGCGTCGACACTATTTGCTCATTGACTACGTAGAGgaattgaataatt : 1677813 269 : alPheAsnTrpIleValLeuGluGlnValLeuMetPheSerLeuLeuIleCysLeu : 286 ::|||!!.!::! !:!!||| !|||:!!:!!! ! |||||||||||||||:!! euPheLysTyrThrLeuLeuLeuGlnMetMetThrSerSerLeuLeuIleCysMet 1677814 : tgttCAAATACACCCTTCTGTTACAGATGATGACCTCGAGTTTGTTAATCTGTATG : 1677867 287 : AspGlyTyrGlnIleLeuMet >>>> Target Intron 1 >>>> AlaAsp : 295 ..!||||||:!! !|||:!! 580 bp !.!. SerGlyTyrGluCysLeuVal++ ++TyrGln 1677868 : TCTGGTTACGAATGTTTAGTGgt.........................agTACCAG : 1678474 296 : GluAspIleLysThrArgSerIlePheSerPheHisIleLeuSerCysLeuCysGl : 314 ! !..!:!: !! !|||! !:!!!:!! !.!.:!!!!::!!:!!! :!!! :! AlaSerLeuLeuLysArgMetValTyrIleMetTyrMetValAlaSerValSerGl 1678475 : GCATCCTTGCTAAAACGCATGGTCTACATCATGTACATGGTTGCCTCAGTGTCAGA : 1678531 315 : nLeuLeuMetPheSerTyrSerCysAspCysIleLeuArgGluSerValSerValA : 333 !|||! !:!!.!. ! !!! ||| :!: !! !.!.||| !:!!:!!! uLeuTrpLeuIleValArgThrValAspGluLeuThrThrHisSerLysAlaIleG 1678532 : ATTATGGTTGATAGTCCGAACCGTAGACGAACTGACCACTCATAGCAAAGCGATCG : 1678588 334 : laThrAlaAlaTyrGluGlyProTrpThrLeuProProMetThrIleSerGlyArg : 351 .! !||| !|||.....! !||| !:!: :::... ::: lyAspAlaMetTyrSerSerAspTrpGlyValIlePheGlyLysLeuGluLysLys 1678589 : GCGATGCGATGTATTCCTCGGATTGGGGAGTgatctttggaaaattggagaagaaa : 1678642 352 : MetMetArgLysAspLeuIleValValIleMetArgAlaSerIleProCysCysLe : 370 ::: ||| :!:..!..!!!::!:! ! !|||||| ! |||! Leu------LysPheAlaLeuThrThrMetValIleArgSerIleGluThrCysSe 1678643 : tta------aaatttgcctTGACGACGATGGTTATCAGATCGATCGAGACGTGTTC : 1678693 371 : uSerGlyLysGlyTyrPheIleValSerLeuGluThrTyrThrSerValLeu : 387 !! ! ! |||!:!||| |||||| !||||||!:!|||||||||:!! rMetLysAlaGlyPhePheAlaValSerSerGluThrPheThrSerValIle 1678694 : TATGAAAGCTGGCTTCTTTGCGGTCTCCAGTGAGACGTTTACATCGGTAATT : 1678746 vulgar: AmOr92PSE 230 387 . KQ414915.1 1677701 1678746 + 132 M 63 189 5 0 2 I 0 576 3 0 2 M 59 177 G 2 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1677702 1678746 132 + . gene_id 9 ; sequence AmOr92PSE ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1677702 1677890 . + . KQ414915.1 exonerate:protein2genome:local exon 1677702 1677890 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1677891 1677892 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1677891 1678470 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1678469 1678470 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1678471 1678746 . + . KQ414915.1 exonerate:protein2genome:local exon 1678471 1678746 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local similarity 1677702 1678746 132 + . alignment_id 9 ; Query AmOr92PSE ; Align 1677702 231 189 ; Align 1678471 294 177 ; Align 1678648 355 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 1214 Query range: 0 -> 398 Target range: 1685751 -> 1690085 1 : MetGlnGlyGluGlyTyrThrAspValSerLeuLysValSerGlnPheLeuLeuLy : 19 ||||||!.! ! !|||! !|||:!!||||||||| ... ||||||||||| MetGlnAlaThrLysTyrArgAspIleSerLeuLysCysGlyIlePheLeuLeuLy 1685752 : ATGCAGGCGACAAAATACAGGGATATTTCCCTCAAgtgtggaatttttcttttgaa : 1685806 20 : sSerAlaGlyIleTrpValIleGlyAsnAspAlaGluGluArgGlnArgLysPheA : 38 | ..!|||:!!|||:!! ! !|||..!!.!|||||||||!:!|||!:!|||. sLeuValGlyLeuTrpMetSerMetAsnSerValGluGluArgArgArgArgPheT 1685807 : attagtCGGCCTCTGGATGTCCATGAACAGCGTCGAGGAGCGTCGAAGGAGGTTCA : 1685863 39 : laValPheTyrThrLeuAlaAlaLeuIleTyrGlyIleTyrValAsnAlaValAsp : 56 !!:!!||| :!!:!! !|||||| !||||||:!!|||||||||!.! !||| hrLeuPheGlySerValPheAlaLeuSerTyrGlyValTyrValAsnValAsnAsp 1685864 : CGTTGTTCGGATCAGTTTTCGCCCTTTCTTACGGCGTTTACGTGAACGTAAACGAT : 1685917 57 : IleTyrHisAsnLeuAspAsnLeuAla >>>> Target Intron 1 >>>> : 66 ||| !|||!:!!!!|||:!!|||::! 1431 bp IleLeuHisSerPheAspAspLeuSer++ ++ 1685918 : ATTCTTCACAGCTTCGATGATCTGAGCgt.........................ag : 1687376 67 : HisCysValPheLeuThrCysAsnMetMetCysIleLeuLeuGlyLeuPheLysCy : 84 ||||||:!!|||||||||||||||! :!!||||||||||||!.!:!!|||||| HisCysIlePheLeuThrCysAsnThrLeuCysIleLeuLeuAlaIlePheLysIl 1687377 : cATTGCATCTTTCTGACTTGCAACACACTGTGCATTCTTCTGGCGATATTTAAGAT : 1687432 85 : sPheValIleSerPhePheArgIleGluPheSerArgIleValSerTyrAlaGlnL : 103 !|||:!!:!!||| ! !|||! ||||||!.!..!||||||! !|||||||||| ePheIleLeuSerAsnHisArgThrGluPheLysGluIleValLeuTyrAlaGlnL 1687433 : TTTCATACTAAGCAATCACAGAACGGAATTCAAGGAGATAGTCTTGTACGCGCAGA : 1687489 104 : ysHisPheTrpArgLeuAspTyrAspTyrAspGluLysIleLeuPheGlyGluCys : 121 |||||||||||!.! !:!!|||..! ! !!:|||!:!:!:|||!:!|||!!:||| ysHisPheTrpHisAspAsnTyrSerLysGluGluArgValLeuTyrGlyAspCys 1687490 : AGCATTTTTGGCATGATAATTACAGCAAAGAGGAGAGGGTGCTTTATGGAGATTGC : 1687543 122 : GlnLysPheCysArgLeuTrpIleIleValValSerMetIleSerGlnSerSerLe : 140 |||!:!||||||!:!||||||:!!|||:!!:!!!!!.!.:!!!!!|||:!!||||| GlnArgPheCysLysLeuTrpValIleLeuIleCysPheLeuThrGlnAlaSerLe 1687544 : CAGAGGTTCTGCAAACTATGGGTCATACTAATATGTTTCCTTACGCAAGCCTCTTT : 1687600 141 : uAlaPheTyrIleIleThrProIleTyr{G} >>>> Target Intron 2 >> : 150 |!.!||||||.!!:!!||||||:!! !{!} 424 bp uValPheTyrPheValThrProLeuThr{A}++ 1687601 : AGTGTTCTACTTTGTCACACCACTCACT{G}gt....................... : 1687633 151 : >> {lu}AsnIleGlyLysAsnLysSerGluArgIleLeuProPheLysMetTrp : 166 { !}|||!!:.!!::!|||||||||!!:|||:!!|||||||||||||||||| ++{la}AsnMetSerArgAsnLysSerAspArgValLeuProPheLysMetTrp 1687634 : ..ag{CA}AATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTGG : 1688102 167 : ValAspLeuProLeuSerValThrProTyrTyrGluIleMetPheValIleGln : 185 ||||||! !|||||||||! !|||||||||||||||:!:||||||..!.!!||| ValAspTrpProLeuSerAspThrProTyrTyrGluLeuMetPheThrPheGln++ 1688103 : GTCGATTGGCCGCTATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAGgt : 1688159 186 : >>>> Target Intron 3 >>>> LeuLeuAlaValGluGlnIleGlyIleAl : 194 179 bp !|||..!||| ! ||||||||| !|| ++AlaLeuCysValTyrGlnIleGlyAlaAl 1688160 : .........................agGCGCTGTGCGTGTATCAAATCGGCGCCGC : 1688365 195 : aTyrValCysSerAspPhePheLeuCysIleLeuAsnLeuHisAlaLeuTyrGlnP : 213 ||||:!!||||||||| |||!!!|||!!:||||||:!!|||!.!:!!! !|||| aTyrIleCysSerAspThrPhePheCysMetLeuAsnMetHisValIleCysGlnP 1688366 : CTATATCTGCTCCGACACGTTTTTCTGCATGCTGAACATGCACGTGATCTGCCAGT : 1688422 214 : heArgMetMetGlnGlnGluLeuSerLysIleTrpSerAlaIleGluGlnGlnThr : 231 |||||!!::!:.!. ! ..!|||! !!!.!!:||| !!!.!|||!!::!!!:! heArgIleLeuAsnTyrArgLeuLeuAsnMetTrpProValIleAspGluArg--- 1688423 : TCCGTATACTAAATTACAGACTGTTGAACATGTGGCCGGTCATCGACGAGCGA--- : 1688476 232 : ThrSerValAlaAlaTyrThrArgGlyCysHisValAlaLeuLysLysCysIleAr : 250 |||!:!:!!.!!! !||||||!.! !|||:!!..! !|||! ! ! ||||||!: ThrAsnMetThrGluTyrThrAsnLysCysTyrThrLysLeuIleAspCysIleLy 1688477 : ACGAACATGACCGAATACACGAACAAATGTTACACCAAGCTGATAGATTGCATCAA : 1688530 251 : gArgHisGlnSerLeuIleGluPheCysAsnLysLeuGluGlnValPheThrPheP : 269 !!.!|||||||||||||||||||||||| |||||||||.!.|||!:!|||!!. sAsnHisGlnSerLeuIleGluPheCysValLysLeuGluAsnValTyrThrLeuT 1688531 : AAATCATCAGTCGTTGATCGAGTTCTGCGTGAAACTCGAGAACGTGTACACGTTGA : 1688587 270 : roIleLeuSerHisValValValPheSerLeuLeuMetCysPheAspThrTyrGlu : 287 !!||||||.!!|||:!!||||||||||||||||||||||||||||||||||||||| hrIleLeuGlyHisIleValValPheSerLeuLeuMetCysPheAspThrTyrGlu 1688588 : CTATACTCGGCCACATAGTGGTCTTCAGCTTGTTGATGTGCTTCGACACGTACGAG : 1688641 288 : IleLeuLeu >>>> Target Intron 4 >>>> AlaAspIleProThrLeu : 296 :!!:!!||| 816 bp ||| ! :!!|||||| ! ValValLeu++ ++AlaLysValProThrThr 1688642 : GTAGTTCTGgt.........................agGCAAAGGTACCTACCACG : 1689484 297 : LysArgLeuIlePheLeuCysHisMetValAlaSerPheIleHisIleIlePhePh : 315 ! !|||||||||||||||! !||||||:!!!.!||||||||||||||||||||||| ThrArgLeuIlePheLeuPheHisMetIleGlySerPheIleHisIleIlePhePh 1689485 : ACGCGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCacataattttctt : 1689541 316 : eThrTyrIleCysHisGlyLeuMetGluGluSerGlyAsnValGlyLeuAlaThrT : 334 |||||||! !||| !||||||!!:||||||||| !:!!:!!!.! !||||||| eThrTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleAlaThrAlaThrT 1689542 : cacgtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCAACAGCAACGT : 1689598 335 : yrSerGlyTrpTrpThrThrLeuProMetAsnGluThrGlyArgMetLeuArgLys : 352 ||:!!||| !||||||..!||||||||||||:!!..!|||!:!|||:!!||| ! yrAlaGlyMetTrpThrValLeuProMetAsnLysValGlyLysMetIleArgGly 1689599 : ATGCAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAATGATACGAGGA : 1689652 353 : AspIleArgIleIleMetMetLysSerMetArgProCysTyrLeuSerArgSerGl : 371 :!!!!:!:!:!!!!:! :!:!:!|||:!!!:!||||||! !:!!!!! !.!!|| AsnMetLysLeuMetThrValArgSerLeuGlnProCysCysIleThrAlaGlyGl 1689653 : AATATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAACTGCTGGTGG : 1689709 372 : yPhePheProMetSerLeuGluThrSerThrAla >>>> Target Intron 5 : 383 ||||||||||:!:||||||:!!|||:!!|||||| 293 bp yPhePheProValSerLeuLysThrAlaThrAla++ 1689710 : ATTCTTTCCTGTCTCCTTGAAAACTGCTACCGCGgt.................... : 1689747 384 : >>>> LeuValSerSerThrMetSerTyrPheThrLeuMetArgGluSerSer : 398 |||:!!||||||||||||||||||||||||||||||||||||!!!||| ++LeuMetSerSerThrMetSerTyrPheThrLeuMetArgGluArgSer 1689748 : .....agCTAATGAGTTCCACAATGTCGTATTTCACGCTCATGAGAGAGAGATCG : 1690085 vulgar: AmOr74FIX 0 398 . KQ414915.1 1685751 1690085 + 1214 M 65 195 5 0 2 I 0 1427 3 0 2 M 84 252 S 0 1 5 0 2 I 0 420 3 0 2 S 1 2 M 34 102 5 0 2 I 0 175 3 0 2 M 46 138 G 1 0 M 59 177 5 0 2 I 0 812 3 0 2 M 92 276 5 0 2 I 0 289 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1685752 1690085 1214 + . gene_id 1 ; sequence AmOr74FIX ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1685752 1685946 . + . KQ414915.1 exonerate:protein2genome:local exon 1685752 1685946 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1685947 1685948 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1685947 1687377 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1687376 1687377 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1687378 1687630 . + . KQ414915.1 exonerate:protein2genome:local exon 1687378 1687630 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1687631 1687632 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1687631 1688054 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1688053 1688054 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1688055 1688158 . + . KQ414915.1 exonerate:protein2genome:local exon 1688055 1688158 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688159 1688160 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688159 1688337 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1688336 1688337 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1688338 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688338 1688652 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 5 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 5 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 4 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690085 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690085 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1685752 1690085 1214 + . alignment_id 1 ; Query AmOr74FIX ; Align 1685752 1 195 ; Align 1687378 66 252 ; Align 1688057 151 102 ; Align 1688338 185 138 ; Align 1688476 232 177 ; Align 1689469 291 276 ; Align 1690038 383 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 529 Query range: 149 -> 396 Target range: 1706998 -> 1709237 150 : GluAsnIleGlyLysAsnLysSerGluArgIleLeuProPheLysMetTrpValAs : 168 |||!::||||||||||||:::|||:!:||||||||| ! !!!!..!.|||:!!|| GluSerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAs 1706999 : GAAAgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGA : 1707053 169 : pLeuProLeuSerValThrProTyrTyrGluIleMetPheValIleGln >>>> : 185 |!!!||| !!!!:!!||||||||||||||||||:!:|||..! ||| pPheProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707054 : CTTTCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt..... : 1707106 186 : Target Intron 1 >>>> LeuLeuAlaValGluGlnIleGlyIleAlaTyrV : 196 276 bp :!!!!! !||| ! ! :!! !!|||::!|||: ++ValPheIleValMetTyrValCysIleSerTyrL 1707107 : ....................agGTTTTTATCGTAATGTACGTTTGCATAAGCTACC : 1707413 197 : alCysSerAspPhePheLeuCysIleLeuAsnLeuHisAlaLeuTyrGlnPheArg : 214 !!|||! !||| !|||||||||!!::!!|||||||||.!! ! !||||||||| euCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArg 1707414 : TTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGA : 1707467 215 : MetMetGlnGlnGluLeuSerLysIleTrpSerAlaIleGluGlnGln<-><-><- : 231 !!::!!||| ! ..!||||||!!.:!:!! .!!|||! !|||!::... IleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAspLysIl 1707468 : ATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaat : 1707524 232 : >ThrThrSerValAlaAlaTyrThrArgGlyCysHisValAlaLeuLysLysCysI : 249 ::: ...... !!:!! !!:!! !! !|||:!!!.! !!!!|||!!.|||| eSerLysLysThrProSerAsnSerAspGluCysTyrAlaLysPheLysAsnCysI 1707525 : ttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCA : 1707581 250 : leArgArgHisGlnSerLeuIleGluPheCysAsnLysLeuGluGlnValPheThr : 267 ||!:!!:!||||||:!!|||||||||!:!||||||:!!|||:!!:!!|||||| ! leGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluValPheGly 1707582 : TTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGGTGTTCGGT : 1707635 268 : PheProIleLeuSerHisValValValPheSerLeuLeuMetCysPheAspThrTy : 286 !!. !:!:|||:!!!!.|||:!!:!!||||||||||||||||||.!!||| !|| LeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAspGlyTy 1707636 : TTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGGATA : 1707692 287 : rGluIleLeuLeu >>>> Target Intron 2 >>>> AlaAspIleProTh : 295 | :!::!!:!! 457 bp ! !|||! !|||! r---LeuValMet++ ++GluAspThrProIl 1707693 : T---TTGGTGATGgt.........................agGAAGATACTCCCAT : 1708173 296 : rLeuLysArgLeuIlePheLeuCysHisMetValAlaSerPheIleHisIleIleP : 314 !:!!:!!||||||! !||||||! !|||:!:..!!.!!!!.!. !!!.:!::!:. eMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuM 1708174 : TATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGA : 1708230 315 : hePheThrTyrIleCysHisGlyLeuMetGluGluSerGlyAsnValGlyLeuAla : 332 !.|||||||||! !||| !! !!|||!!:..!|||||| !||||||!.! !||| etPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAla 1708231 : TGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCT : 1708284 333 : ThrTyrSerGlyTrpTrpThrThrLeuProMetAsnGluThrGlyArgMetLeuAr : 351 ! !|||..! !!! !|||! ! !|||||||||:!!..!:!!|||||||||||||| IleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuAr 1708285 : ATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCG : 1708341 352 : gLysAspIleArgIleIleMetMetLysSerMetArgProCysTyrLeuSerArgS : 370 |||||||:!:! !.!!:!!!!: !:!|||! !||||||! !|||!!! !! gLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaC 1708342 : AAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTT : 1708398 371 : erGlyPhePheProMetSerLeuGluThrSerThrAla >>>> Target Intr : 383 !!||||||||||||:!!||||||||||||! !|||:!! 759 bp ysGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708399 : GTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt................ : 1708439 384 : on 3 >>>> LeuValSerSerThrMetSerTyrPheThrLeuMetArgGlu : 396 :!!:!!|||!!!.!! !|||||||||||||||:!:|||:!! ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgLys 1708440 : .........agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTACGAAAA : 1709237 vulgar: AmOr74FIX 149 396 . KQ414915.1 1706998 1709237 + 529 M 35 105 5 0 2 I 0 272 3 0 2 M 46 138 G 0 9 M 56 168 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1706999 1709237 529 + . gene_id 2 ; sequence AmOr74FIX ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1706999 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1706999 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 9 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709237 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709237 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1706999 1709237 529 + . alignment_id 2 ; Query AmOr74FIX ; Align 1706999 150 105 ; Align 1707380 185 138 ; Align 1707527 231 168 ; Align 1707695 288 9 ; Align 1708161 291 276 ; Align 1709196 383 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 373 Query range: 54 -> 230 Target range: 1698514 -> 1699773 55 : ValAspIleTyrHisAsnLeuAspAsnLeuAlaHisCysValPheLeuThrCysAs : 73 :!! !!||| :::...::: ...||| !!|||!.!!:! !.!!||||| LeuHisIleGlyAsnThrIlePheGlnLeu***AspCysAlaTyrThrAlaCysAs 1698515 : TTACACATAGgcaatacaatttttcaattataggACTGTGCTTACACCGCTTGTAA : 1698569 74 : nMetMetCysIleLeuLeuGlyLeuPheLysCysPheValIleSerPhePheArgI : 92 |!!::!:|||:!::!!:!!! !|||!!.||| ||||||:!!! !.!. !|||! nIleLeuCysLeuIleMetValLeuLeuLysLeuPheValValPheIleHisArgL 1698570 : CATTCTCTGCCTGATTATGGTACTGTTAAAGCTGTTCGTTGTATTCATACACAGGA : 1698626 93 : leGluPheSerArgIleValSerTyrAlaGlnLysHisPheTrpArgLeuAspTyr : 110 !||||||! !..!:!:::: ||| |||:::||||||..!|||:!!||| ysGluPheIleGluLeuLeuValTyrMetTyrLysAsnPheTrpHisLeuAsnTyr 1698627 : AAGAATTCATCGAACTgcttgtatatatgtacaaaaatttttggcACCTCAATTAC : 1698680 111 : AspTyrAspGluLysIleLeuPheGlyGluCysGlnLysPheCysArgLeuTrpIl : 129 |||! !:!!||| !:!!|||.!. !!!:|||::!!:!.!! !!! !:!!!! || AspCysAsnGluLeuLeuLeuLeuGlnAspCysArgArgIleSerThrIleCysIl 1698681 : GATTGCAACGAACTACTACTGCTGCAAGACTGCAGAAGAATTAGCACTATATGTAT : 1698737 130 : eIleValValSerMetIleSerGlnSerSerLeuAlaPheTyrIleIleThrProI : 148 |! :!!:!!!:!.!. !:!!|||.!!!!!:!!!.! !|||:!::!!||||||| eThrLeuIleAsnPheCysAlaGlnGlyThrIleValSerTyrValLeuThrProI 1698738 : CACGTTGATTAACTTCTGTGCTCAAGGCACAATTGTCAGCTACGTGCTAACACCTA : 1698794 149 : leTyr{G} >>>> Target Intron 1 >>>> {lu}AsnIleGlyLysAsn : 155 || {!} 232 bp { !}|||||||||:::||| leIle{A}++ ++{la}AsnIleGlyArgAsn 1698795 : TTATA{G}gt.........................ag{ca}aatattggaagaaaC : 1699047 156 : LysSerGluArgIleLeuProPheLysMetTrpValAspLeuProLeuSerValTh : 174 !..|||!!:|||:!:|||||||||!!.|||||||||||||||||||||||||||:! SerSerAspArgValLeuProPheAsnMetTrpValAspLeuProLeuSerValSe 1699048 : AGTTCCGATAGAGTGCTCCCATTCAACATGTGGGTTGATTTGCCGCTGTCTGTGTC : 1699104 175 : rProTyrTyrGluIleMetPheValIle--{G} >>>> Target Intron 2 : 184 !||| |||||||||:!!||||||:!!##{:} 497 bp rProThrTyrGluIleValPheValLeu##{G}++ 1699105 : ACCAACGTACGAAATAGTGTTCGTGCTTCA{G}gt..................... : 1699139 185 : >>>> {ln}LeuLeuAlaValGluGlnIleGlyIleAlaTyrValCysSerAspP : 200 {!!}:!!|||:!!:!! ! !!.:!!|||:!!..!|||:!!|||! !||| +-{lu}ValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspA 1699140 : ....ac{AG}GTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACA : 1699681 201 : hePheLeuCysIleLeuAsnLeuHisAlaLeuTyrGlnPheArgMetMetGlnGln : 218 !.!!||||||:!::!!|||||||||||| ! !|||||||||!!::!!||| ! snLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyr 1699682 : ACCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATAC : 1699735 219 : GluLeuSerLysIleTrpSerAlaIleGluGlnGln : 230 ..!||||||!!.:!: ! ..!.!!! !..!:!!||| ArgLeuSerAsnLeuGlyAspThrAsnArgLysGln 1699736 : AGGTTATCGAACTTGGGTGATACGAACAGGAAGCAA : 1699773 vulgar: AmOr74FIX 54 230 . KQ414915.1 1698514 1699773 + 373 M 95 285 S 0 1 5 0 2 I 0 228 3 0 2 S 1 2 M 33 99 F 0 2 S 0 1 5 0 2 I 0 493 3 0 2 S 1 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1698515 1699773 373 + . gene_id 3 ; sequence AmOr74FIX ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1698515 1698800 . + . KQ414915.1 exonerate:protein2genome:local exon 1698515 1698800 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1698801 1698802 . + . intron_id 1 ; splice_site "Gt" KQ414915.1 exonerate:protein2genome:local intron 1698801 1699032 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699031 1699032 . + . intron_id 0 ; splice_site "Ag" KQ414915.1 exonerate:protein2genome:local cds 1699033 1699136 . + . KQ414915.1 exonerate:protein2genome:local exon 1699033 1699136 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414915.1 exonerate:protein2genome:local splice5 1699137 1699138 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699137 1699633 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1699632 1699633 . + . intron_id 1 ; splice_site "AC" KQ414915.1 exonerate:protein2genome:local cds 1699634 1699773 . + . KQ414915.1 exonerate:protein2genome:local exon 1699634 1699773 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1698515 1699773 373 + . alignment_id 3 ; Query AmOr74FIX ; Align 1698515 55 285 ; Align 1699035 151 99 ; Align 1699636 185 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 372 Query range: 227 -> 397 Target range: 1702163 -> 1703653 228 : GluGlnGlnThrThrSerValAlaAlaTyrThrArgGlyCysHisValAlaLeuLy : 246 .!.:!!...!:!.!!:!!:!!:!! !!:!.!!..!..!|||:!! !|||!!!|| AsnGluSerSerAlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLy 1702164 : AATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAA : 1702218 247 : sLysCysIleArgArgHisGlnSerLeuIleGluPheCysAsnLysLeuGluGlnV : 265 |!!.|||:!!|||!:!||||||!:!! !||| !!:!|||:!!!:!|||.!.:!!: sAsnCysValArgGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluI 1702219 : AAATTGCGTACGACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAA : 1702275 266 : alPheThrPheProIleLeuSerHisValValValPheSerLeuLeuMetCysPhe : 283 !!|||||| !! !:!!|||.!!|||:!!:!!|||||||||||||||!!:|||.!. lePheThrValIleValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeu 1702276 : TATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTG : 1702329 284 : AspThrTyrGluIleLeuLeu >>>> Target Intron 1 >>>> AlaAsp : 292 ! ! !!:!:!!:!:|||:!! 607 bp .!! ! ValGlyPheGlnValLeuVal++ -+ThrPro 1702330 : GTTGGATTCCAAGTGCTCGTGgt.........................ggACACCT : 1702963 293 : IleProThrLeuLysArgLeuIlePheLeuCysHisMetValAlaSerPheIleHi : 311 :!: !! !! !!:!||||||! !|||:!!! !|||!!:|||!.!|||.!. !!! ValThrProAlaArgArgLeuThrPheValPheHisIleValGlySerLeuCysGl 1702964 : GTGACTCCAGCGAGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCA : 1703020 312 : sIleIlePhePheThrTyrIleCysHisGlyLeuMetGluGluSerGlyAsnValG : 330 .:!!:!:.!.|||||||||! !||| !!||||||!!:||||||||| !|||:!!| nLeuLeuLeuPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleG 1703021 : ACTATTGCTATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCG : 1703077 331 : lyLeuAlaThrTyrSerGlyTrpTrpThrThrLeuProMetAsnGluThrGlyArg : 348 || !|||! !||| !||| |||! ! !|||||||||:!!:!!.!!|||||| lyThrAlaIleTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArg 1703078 : GGACTGCGATATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGA : 1703131 349 : MetLeuArgLysAspIleArgIleIleMetMetLysSerMetArgProCysTyrLe : 367 ! !||||||!:!|||:!:! !!!::!!!!::!:!:!|||! !:! !! !!! !|| ArgLeuArgArgAspLeuThrMetValIleValArgSerArgLysSerSerCysLe 1703132 : AGGTTGAGAAGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTT : 1703188 368 : uSerArgSerGlyPhePheProMetSerLeuGluThrSerThrAla >>>> Tar : 383 |!!! !|||||||||||||||:!:||||||||||||!!!|||.!! uThrAlaSerGlyPhePheProValSerLeuGluThrCysThrThr++ 1703189 : AACTGCCAGCGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGgt........ : 1703238 384 : get Intron 2 >>>> LeuValSerSerThrMetSerTyrPheThrLeuMetA : 395 373 bp :!!:!!|||!!!.!!||||||||||||||||||:!:| ++ValLeuSerThrAlaMetSerTyrPheThrLeuLeuA 1703239 : .................agGTGCTCAGTACAGCGATGTCATACTTCACTTTATTAA : 1703645 396 : rgGluSer : 397 ||.!.||| rgHisSer 1703646 : GGCACTCT : 1703653 vulgar: AmOr74FIX 227 397 . KQ414915.1 1702163 1703653 + 372 M 63 189 5 0 2 I 0 603 3 0 2 M 92 276 5 0 2 I 0 369 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702164 1703653 372 + . gene_id 4 ; sequence AmOr74FIX ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702164 1702352 . + . KQ414915.1 exonerate:protein2genome:local exon 1702164 1702352 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1702353 1702354 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1702353 1702959 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702958 1702959 . + . intron_id 0 ; splice_site "GG" KQ414915.1 exonerate:protein2genome:local cds 1702960 1703235 . + . KQ414915.1 exonerate:protein2genome:local exon 1702960 1703235 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1703236 1703237 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1703236 1703608 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1703607 1703608 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1703609 1703653 . + . KQ414915.1 exonerate:protein2genome:local exon 1703609 1703653 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702164 1703653 372 + . alignment_id 4 ; Query AmOr74FIX ; Align 1702164 228 189 ; Align 1702960 291 276 ; Align 1703609 383 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 344 Query range: 67 -> 231 Target range: 1710869 -> 1712026 68 : ValPheLeuThrCysAsnMetMetCysIleLeuLeuGlyLeuPheLysCysPheVa : 86 :!!||| !! !|||!.!:!::!!! :!::!!:!! ! !.!!||| .!!:! LeuPheAspIleCysThrLeuLeuSerValIleMetProAlaIleLysIleIleIl 1710870 : CTGTTCGACATATGCACTCTTCTGTCGGTGATAATGCCCGCTATCAAAATAATCAT : 1710924 87 : lIleSerPhePheArgIleGluPheSerArgIleValSerTyrAlaGlnLysHisP : 105 !:!:! !.!! !!:! ||||||! !|||:!::!! !|||.!!:!!::!!!.| eLeuPheIleAsnLysGluGluPhePheArgLeuIleValTyrThrGluArgGlnP 1710925 : CCTGTTTATCAACAAGGAGGAGTTTTTCCGTTTGATCGTGTACACAGAGCGACAAT : 1710981 106 : heTrpArgLeuAspTyrAspTyrAspGluLysIleLeuPheGlyGluCysGlnLys : 123 || !!.! !||||||:!! ! ||||||!:!! :!! ! !!!:|||:!!::: heMetAsnGlyAspTyrAsnGluAspGluArgLysIleValPheAspCysLysArg 1710982 : TCATGAACGGGGATTACAACGAGGACGAGAGGAAGATTGTGTTCGATTGTAAACGC : 1711035 124 : PheCysArgLeuTrpIleIleValValSerMetIleSerGlnSerSerLeuAlaPh : 142 .!.|||! !!!!!::! ! ! !!:!!||| :!:!!! !|||!!!:!! !! LeuCysThrPhePheThrCysPheLeuSerSerValThrLeuSerCysValLeuSe 1711036 : CTGTGTACATTCTTCACTTGTTTCCTCTCATCTGTGACTTTATCGTGCGTTCTCTC : 1711092 143 : eTyrIleIleThrProIleTyr{G} >>>> Target Intron 1 >>>> {l : 150 !|||:!!:!!||||||||||||{ } 119 bp { rTyrValValThrProIleTyr{M}++ ++{e 1711093 : TTACGTCGTCACTCCAATTTAC{A}gt.........................ag{T : 1711236 151 : u}AsnIleGlyLysAsnLysSerGluArgIleLeuProPheLysMetTrpValAsp : 168 !}|||||||||!:!|||:!!|||!!:||||||||||||||||||||||||:!!||| t}AsnIleGlyArgAsnGluSerAspArgIleLeuProPheLysMetTrpIleAsp 1711237 : G}AATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTGGATTGAT : 1711289 169 : LeuProLeuSerValThrProTyrTyrGluIleMetPheValIleGln >>>> T : 185 :!!||| !|||:!!|||||||||:::||||||...|||...:!!||| IleProThrSerMetThrProTyrPheGluIlePhePheThrLeuGln++ 1711290 : ATACCGACATCGATGACACcgtattttgaaatattcttcaccTTACAGgt...... : 1711342 186 : arget Intron 2 >>>> LeuLeuAlaValGluGlnIleGlyIleAlaTyrVa : 196 546 bp :!!|||:!!!.! ! |||||||||:!:::!|||! ++ValLeuSerAlaTyrGlnIleGlyValSerTyrGl 1711343 : ...................agGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGG : 1711919 197 : lCysSerAspPhePheLeuCysIleLeuAsnLeuHisAlaLeuTyrGlnPheArgM : 215 !|||! !||| ! !!|||||||||:!!||||||||| ! ! !|||||||||! yCysPheAspAsnValLeuCysIleMetAsnLeuHisLeuAlaThrGlnPheArgI 1711920 : TTGCTTCGACAACGTTCTATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAA : 1711976 216 : etMetGlnGlnGluLeuSerLysIleTrpSerAlaIleGluGlnGlnThr : 231 !::!!|||!!...!||| !!!.||| .!! !! ...:!!|||||| leLeuGlnHisArgLeuValAsnIleAsnGlyLeuLysSerLysGlnThr 1711977 : TACTGCAACATAGACTGGTGAATATAAACGGTCTGAAGAGCAAACAGACA : 1712026 vulgar: AmOr74FIX 67 231 . KQ414915.1 1710869 1712026 + 344 M 82 246 S 0 1 5 0 2 I 0 115 3 0 2 S 1 2 M 34 102 5 0 2 I 0 542 3 0 2 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1710870 1712026 344 + . gene_id 5 ; sequence AmOr74FIX ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1710870 1711116 . + . KQ414915.1 exonerate:protein2genome:local exon 1710870 1711116 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711117 1711118 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711117 1711235 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711234 1711235 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711236 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711236 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712026 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712026 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1710870 1712026 344 + . alignment_id 5 ; Query AmOr74FIX ; Align 1710870 68 246 ; Align 1711238 151 102 ; Align 1711886 185 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 201 Query range: 296 -> 386 Target range: 1712387 -> 1712657 297 : LysArgLeuIlePheLeuCysHisMetValAlaSerPheIleHisIleIlePhePh : 315 |||!:!:::|||||| |||:::!.!!.!!!!.!. !!!.:!::!:.!.|| LysGlnMetIlePheThrPheHisLeuAlaGlyCysMetCysGlnLeuLeuMetPh 1712388 : AAACAGAtgattttcacgtttcacctAGCGGGATGTATGTGTCAATTGCTGATGTT : 1712442 316 : eThrTyrIleCysHisGlyLeuMetGluGluSerGlyAsnValGlyLeuAlaThrT : 334 |||||||! !||| !! !!:!!!!: !|||||| !|||||| ! !|||..!| eThrTyrSerCysAspCysIleIleThrGluSerLeuAsnValThrGluAlaValT 1712443 : TACGTACAGCTGCGATTGTATAATAACGGAAAGTTTGAACGTGACGGAAGCGGTGT : 1712499 335 : yrSerGlyTrpTrpThrThrLeuProMetAsnGluThrGlyArgMetLeuArgLys : 352 ||..!||| ||| !! !|||||||||!:! !! !|||||||||:!!|||||| yrAspGlyProTrpProArgLeuProMetSerThrArgGlyArgMetIleArgLys 1712500 : ACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGAAGAATGATAAGGAAG : 1712553 353 : AspIleArgIleIleMetMetLysSerMetArgProCysTyrLeuSerArgSerGl : 371 |||:!:! !:!!:!!!!:!!:!:!|||! !||||||! !|||!!! !!!!|| AspLeuIleLeuValIleIleArgSerArgValProCysCysLeuThrAlaArgGl 1712554 : GATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTGCTTGACCGCCAGAGG : 1712610 372 : yPhePheProMetSerLeuGluThrSerThrAlaLeuValSerSer : 386 ||||||| !!!:||||||||||||! !||| !:!!:!!..!||| yPhePheValIleSerLeuGluThrTyrThrLysValIleAspSer 1712611 : ATTCTTCGTAATATCTTTGGAAACGTATACGAAGGTAATTGACTCT : 1712657 vulgar: AmOr74FIX 296 386 . KQ414915.1 1712387 1712657 + 201 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712388 1712657 201 + . gene_id 6 ; sequence AmOr74FIX ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1712388 1712657 . + . KQ414915.1 exonerate:protein2genome:local exon 1712388 1712657 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712388 1712657 201 + . alignment_id 6 ; Query AmOr74FIX ; Align 1712388 297 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 187 Query range: 66 -> 151 Target range: 1694003 -> 1694258 67 : CysValPheLeuThrCysAsnMetMetCysIleLeuLeuGlyLeuPheLysCysPh : 85 |||:!!!:!:!! !||||||!!::!:! !:!! !:!!! !!!!|||||| !.! CysIleTyrValGlyCysAsnIleLeuTyrLeuAlaIleValPhePheLysIleLe 1694004 : TGCATTTACGTCGGGTGCAACATTTTATACCTAGCGATCGTTTTCTTCAAGATCCT : 1694058 86 : eValIleSerPhePheArgIleGluPheSerArgIleValSerTyrAlaGlnLysH : 104 !|||:!:! ! !||||||||||||! ! !!:!!:!!!!!!:!.!!|||:!! uValLeuTyrLysHisArgIleGluPheTyrGlyLeuIleArgPheThrGlnGluL 1694059 : CGTTTTGTACAAGCACAGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAGAGA : 1694115 105 : isPheTrpArgLeuAspTyrAspTyrAspGluLysIleLeuPheGlyGluCysGln : 122 ! ||||||!.!!!!||||||:!!! ||||||:!!:!!!!...!||||||:!! ysPheTrpHisPheAspTyrAsnSerArgGluLysLeuIleLeuSerGluCysLys 1694116 : AATTCTGGCATTTCGACTATAATTCACGGGAGAAGTTAATTTTATCCGAGTGCAAG : 1694169 123 : LysPheCysArgLeuTrpIleIleValValSerMetIleSerGlnSerSerLeuAl : 141 |||.!.|||! !:!!!::|||:!!!.! !!|||.!. !!!!|||.!!!!!! !|| LysIleCysThrValPheIleValAlaPheSerPheCysThrGlnGlyThrCysAl 1694170 : AAGATATGTACCGTTTTCATCGTTGCCTTCAGCTTCTGTACTCAGGGCACGTGTGC : 1694226 142 : aPheTyrIleIleThrProIleTyrGluAsn : 151 | !|||:!!:!:|||||||||! ||| aGlyTyrValValThrProIleLeuGlyAsn 1694227 : TGGTTACGTAGTGACACCTATTTTAggtaat : 1694258 vulgar: AmOr74FIX 66 151 . KQ414915.1 1694003 1694258 + 187 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694004 1694258 187 + . gene_id 7 ; sequence AmOr74FIX ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1694004 1694258 . + . KQ414915.1 exonerate:protein2genome:local exon 1694004 1694258 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694004 1694258 187 + . alignment_id 7 ; Query AmOr74FIX ; Align 1694004 67 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 290 -> 391 Target range: 1695617 -> 1695920 291 : AlaAspIleProThrLeuLysArgLeuIlePheLeuCysHisMetValAlaSerPh : 309 .!!||| !||| !!! !!:!!.!:!! !!!.:!! !:!!:!!!.!!.!!!!!! ThrAspSerProProSerArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrLe 1695618 : ACAGACTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTTT : 1695672 310 : eIleHisIleIlePhePheThrTyrIleCysHisGlyLeuMetGluGluSerGlyA : 328 . !!!.:!!.!!.!.|||||||||! !||| !!||||||! ..!|||||| !: uCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGluSerMetA 1695673 : GTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATGG : 1695729 329 : snValGlyLeuAlaThrTyrSerGlyTrpTrpThrThrLeuProMetAsnGluThr : 346 !!|||.!! !|||..!!:!:!! !! !|||.!!!.!|||||||||:!!..!!.! spValSerArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAspArgAsn 1695730 : ACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAAT : 1695783 347 : GlyArgMetLeuArgLysAspIleArgIleIleMetMetLysSerMetArgProCy : 365 |||!:!! :!!|||:!!..!!!:! !!!::!:!!:|||!:!|||! ||| !|| GlyLysSerValArgGlnSerMetLeuMetValIleMetArgSerAsnArgCysCy 1695784 : GGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTTG : 1695840 366 : sTyrLeuSerArgSerGlyPhePheProMetSerLeuGluThrSerThrAlaLeuV : 384 |! !|||!!! !|||||||||||||||:!:||||||||||||! !|||!.!:!!: sCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrGlyValI 1695841 : CTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGGTAA : 1695897 385 : alSerSerThrMetSerTyrPhe : 391 !!!:!! ! !! !||| !||| leAsn***AspThrSerIlePhe 1695898 : TTAATTAAGATACGTCCATTTTT : 1695920 vulgar: AmOr74FIX 290 391 . KQ414915.1 1695617 1695920 + 183 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1695618 1695920 183 + . gene_id 8 ; sequence AmOr74FIX ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1695618 1695920 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695920 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1695618 1695920 183 + . alignment_id 8 ; Query AmOr74FIX ; Align 1695618 291 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 295 -> 402 Target range: 1682553 -> 1682868 296 : LeuLysArgLeuIlePheLeuCysHisMetValAlaSerPheIleHisIleIlePh : 314 :!!|||||||||:!:|||||| !:!!.!.:!!!.!.!! ! |||...|||..... MetLysArgLeuLeuPheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePheLe 1682554 : ATGAAACGATTGTTGTTCCTAAATTACTTTCTCGGTGGAGTGATacagatattttt : 1682608 315 : ePheThrTyrIleCysHisGlyLeuMetGluGluSerGlyAsnValGlyLeuAlaT : 333 ....||| ! !|||:!!! !:!!||||||:!!|||||| !:!!||| !|||! uIleThrLeuAsnCysAsnAspIleMetGluGlnSerGlyAlaIleGlyThrAlaI 1682609 : aataacccTAAATTGCAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAGCGA : 1682665 334 : hrTyrSerGlyTrpTrpThrThrLeuProMetAsnGluThrGlyArgMetLeuArg : 351 !|||||| !! ||| !! ! |||... ..!!!!||| leTyrSerCysAsnTrpGluArgAsnValTyrAsnHisPhe---TyrGlnPheArg 1682666 : TCTACAGTTGTAATTGGGAGAGGAAtgtttataatcatttt---taccAGTTCAGA : 1682716 352 : LysAspIleArgIleIleMetMetLysSerMetArgProCysTyrLeuSerArgSe : 370 ||||||!!:! !|||:!!|||:!:::!:!!! ||||||||||||:!!||| !:! LysAspMetMetIleValMetValArgAlaLysArgProCysTyrIleSerAlaAl 1682717 : AAGGATATGATGATTGTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGCAGC : 1682773 371 : rGlyPhePheProMetSerLeuGluThrSerThrAlaLeuValSerSerThrMetS : 389 ! !|||||||||!!:|||||||||:!!! !||| |||::: :::: aLysPhePheProIleSerLeuGluSerPheThrLys---ValThrIlePheIleA 1682774 : GAAATTCTTTCCAATCTCCCTTGAATCGTTCACGAag---gtaacaatttttatta : 1682827 390 : erTyrPheThrLeuMetArgGluSerSerMetLysThrAsn : 402 ::::::::|||:!! |||:!!!!! ... |||||| snPheTyrThrIle***ArgLysThrValPheIleThrAsn 1682828 : atttttacacgaTTTAACGTAAAACAGtatttataacaaat : 1682868 vulgar: AmOr74FIX 295 402 . KQ414915.1 1682553 1682868 + 175 M 51 153 G 1 0 M 35 105 G 1 0 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682554 1682868 175 + . gene_id 9 ; sequence AmOr74FIX ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1682554 1682868 . + . KQ414915.1 exonerate:protein2genome:local exon 1682554 1682868 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local similarity 1682554 1682868 175 + . alignment_id 9 ; Query AmOr74FIX ; Align 1682554 296 153 ; Align 1682707 348 105 ; Align 1682812 384 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 227 -> 295 Target range: 1699782 -> 1699986 228 : GluGlnGlnThrThrSerValAlaAlaTyrThrArgGlyCysHisValAlaLeuLy : 246 .!.:!!...!:!.!!:!!:!!:!! !!:!.!!..!..!|||:!! !|||!!!|| AsnGluSerSerAlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLy 1699783 : AATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAA : 1699837 247 : sLysCysIleArgArgHisGlnSerLeuIleGluPheCysAsnLysLeuGluGlnV : 265 |!!.|||:!!|||!:!||||||!:!! !||| !!:!|||:!!!:!|||.!.:!!: sAsnCysValArgGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluI 1699838 : AAATTGCGTACGACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAA : 1699894 266 : alPheThrPheProIleLeuSerHisValValValPheSerLeuLeuMetCysPhe : 283 !!|||||| !! !:!!|||.!!|||:!!:!!|||||||||||||||!!:|||.!. lePheThrValIleValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeu 1699895 : TATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTG : 1699948 284 : AspThrTyrGluIleLeuLeuAlaAspIleProThr : 295 ! ! !!:!:!!:!:|||:!!! !:!!||| !||| ValGlyPheGlnValLeuValGluAsnIleIleThr 1699949 : GTTGGATTCCAAGTGCTCGTAGAAAACATCATCACC : 1699986 vulgar: AmOr74FIX 227 295 . KQ414915.1 1699782 1699986 + 154 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699783 1699986 154 + . gene_id 10 ; sequence AmOr74FIX ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1699783 1699986 . + . KQ414915.1 exonerate:protein2genome:local exon 1699783 1699986 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699783 1699986 154 + . alignment_id 10 ; Query AmOr74FIX ; Align 1699783 228 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 150 -> 185 Target range: 1694355 -> 1694460 151 : AsnIleGlyLysAsnLysSerGluArgIleLeuProPheLysMetTrpValAspLe : 169 |||:!!|||||||||:!!|||||||||!!:|||||||||!!.||||||||||||!! AsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTrpValAspPh 1694356 : AATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTGGGTTGACTT : 1694410 170 : uProLeuSerValThrProTyrTyrGluIleMetPheValIleGlnLeu : 185 !||| !.!!:!!:!!||||||||||||:!!:!:|||:!!||||||:!! eProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGlnVal 1694411 : TCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGGTA : 1694460 vulgar: AmOr74FIX 150 185 . KQ414915.1 1694355 1694460 + 143 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694356 1694460 143 + . gene_id 11 ; sequence AmOr74FIX ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1694356 1694460 . + . KQ414915.1 exonerate:protein2genome:local exon 1694356 1694460 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694356 1694460 143 + . alignment_id 11 ; Query AmOr74FIX ; Align 1694356 151 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 243 -> 290 Target range: 1712086 -> 1712227 244 : AlaLeuLysLysCysIleArgArgHisGlnSerLeuIleGluPheCysAsnLysLe : 262 !.!!!!|||!:!|||:!!|||!:!||||||||||||!!:! ||||||...||||| ValPheLysArgCysValArgGlnHisGlnSerLeuMetAlaPheCysGluLysLe 1712087 : GTTTTCAAAAGATGCGTTCGTCAACATCAATCTCTGATGGCTTTCTgcgagaaact : 1712141 263 : uGluGlnValPheThrPheProIleLeuSerHisValValValPheSerLeuLeuM : 281 ||||::::::|||!:!.!. !||||||.!!!!.:!!:!!|||||||||:!!!!!| uGluGluMetPheSerMetIleIleLeuGlyGlnLeuLeuValPheSerIlePheM 1712142 : cgaagaaatgTTCAGTATGATTATACTGGGGCAATTGTTAGTGTTCAGTATTTTTA : 1712198 282 : etCysPheAspThrTyrGluIleLeuLeu : 290 |||||.!!|||..!! !:!!:!!|||||| etCysLeuAspValCysGlnValLeuLeu 1712199 : TGTGTCTCGACGTGTGCCAAGTACTTCTG : 1712227 vulgar: AmOr74FIX 243 290 . KQ414915.1 1712086 1712227 + 139 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712087 1712227 139 + . gene_id 12 ; sequence AmOr74FIX ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1712087 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1712087 1712227 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712087 1712227 139 + . alignment_id 12 ; Query AmOr74FIX ; Align 1712087 244 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 183 -> 290 Target range: 1677575 -> 1677890 184 : GlnLeuLeuAlaValGluGlnIleGlyIleAlaTyrValCysSerAspPhePheLe : 202 |||:!!!!! ! ! ! ! :!: !:!!..!|||:!! !!! !||| ! GlnIlePheLeuCysMetTyrLeuLeuLeuCysTyrIleGlyPheAspAlaSerAl 1677576 : caGATTTTCCTCTGCATGTACTTGTTGCTATGCTACATCGGTTTCGACGCGTCAGC : 1677630 203 : uCysIleLeuAsnLeuHisAlaLeuTyrGlnPheArgMetMetGlnGlnGluLeuS : 221 !|||:!:|||! :!!|||||| ! !!||||||!!::!: !:! !|||| aCysValLeuIleIleHisAlaAlaAla***PheArgIleLeuGlyArgLeuLeuS 1677631 : GTGTGTGCTGATAATACACGCGGCCGCATAATTCAGAATACTTGGCCGACTGCTGT : 1677687 222 : erLysIleTrpSerAlaIleGluGlnGlnThrThrSerValAlaAlaTyrThrArg : 239 || ! |||!::!!! |||:!!! ! !!.!! ! !::! !!:! erTyrIlePheThr------GluGluLeuTyrAspLysGluIleSerIleGlnLys 1677688 : CATATATTTTCACC------GAGGAACTTTACGATAAAGAGATTAGCATACAGAAG : 1677735 240 : GlyCysHisValAlaLeuLysLysCysIleArgArgHisGlnSerLeuIleGluPh : 258 ! ...:::||||||:!:||||||||| ! ! !||||||!!:!: GlnMetSerGlnLysPheGluLysCysLeuArgArgHisTyrLeuLeuIleAspTy 1677736 : CAAATGTCGcagaaattcgagaaatgcTTGCGTCGACACTATTTGCTCATTGACTA : 1677792 259 : eCysAsnLysLeuGluGlnValPheThrPheProIleLeuSerHisValValValP : 277 ! .!.:::|||......:::|||! !!:! !!:!!|||! !!!.:!!:!!..!! rValGluGluLeuAsnAsnLeuPheLysTyrThrLeuLeuLeuGlnMetMetThrS 1677793 : CGTAGAGgaattgaataatttgttCAAATACACCCTTCTGTTACAGATGATGACCT : 1677849 278 : heSerLeuLeuMetCysPheAspThrTyrGluIleLeuLeu : 290 |||||||||!!:|||.!...! !|||||| !|||:!! erSerLeuLeuIleCysMetSerGlyTyrGluCysLeuVal 1677850 : CGAGTTTGTTAATCTGTATGTCTGGTTACGAATGTTTAGTG : 1677890 vulgar: AmOr74FIX 183 290 . KQ414915.1 1677575 1677890 + 114 M 42 126 G 2 0 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1677576 1677890 114 + . gene_id 13 ; sequence AmOr74FIX ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1677576 1677890 . + . KQ414915.1 exonerate:protein2genome:local exon 1677576 1677890 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local similarity 1677576 1677890 114 + . alignment_id 13 ; Query AmOr74FIX ; Align 1677576 184 126 ; Align 1677702 228 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 183 -> 230 Target range: 1702013 -> 1702154 184 : GlnLeuLeuAlaValGluGlnIleGlyIleAlaTyrValCysSerAspPhePheLe : 202 |||:!!|||:!!:!! ! !!.:!!|||:!!..!|||:!!|||! !||| !.!!|| GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 203 : uCysIleLeuAsnLeuHisAlaLeuTyrGlnPheArgMetMetGlnGlnGluLeuS : 221 ||||:!::!!|||||||||||| ! !|||||||||!!::!!||| ! ..!|||| uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 222 : erLysIleTrpSerAlaIleGluGlnGln : 230 ||!!.:!: ! ..!.!!! !..!:!!||| erAsnLeuGlyAspThrAsnArgLysGln 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAA : 1702154 vulgar: AmOr74FIX 183 230 . KQ414915.1 1702013 1702154 + 112 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1702154 112 + . gene_id 14 ; sequence AmOr74FIX ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702014 1702154 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702154 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1702154 112 + . alignment_id 14 ; Query AmOr74FIX ; Align 1702014 184 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 149 -> 185 Target range: 1681722 -> 1681833 150 : GluAsnIleGlyLysAsnLysSerGluArgIleLeuProPheLysMetTrpVal<- : 168 |||||||||||||||!:! ! ..!|||||||||||||||||| !.!. ! ||| GluAsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPh 1681723 : gaGAACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTT : 1681777 169 : >AspLeuProLeuSerValThrProTyrTyrGluIleMetPheValIleGlnLeu : 185 :!!|||||| !|||:!!||||||||||||||||||:::|||||||||:!!:!! eAsnLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGluVal 1681778 : TAACTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGGTG : 1681833 vulgar: AmOr74FIX 149 185 . KQ414915.1 1681722 1681833 + 109 M 18 54 G 0 3 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681723 1681833 109 + . gene_id 15 ; sequence AmOr74FIX ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1681723 1681833 . + . KQ414915.1 exonerate:protein2genome:local exon 1681723 1681833 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681723 1681833 109 + . alignment_id 15 ; Query AmOr74FIX ; Align 1681723 150 54 ; Align 1681780 168 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 0 -> 59 Target range: 1700446 -> 1700623 1 : MetGlnGlyGluGlyTyrThrAspValSerLeuLysValSerGlnPheLeuLeuLy : 19 ||| ..!:!! ! !!! !|||||||||:!!!..|||!!! |||! !||||| MetThrSerLysLysAsnArgAspValSerValSerValThrAlaPheTyrLeuLy 1700447 : ATGACTTCGAAGAAGAACAGGGACGTATCAGTGAGCGTCACAGCTTTCTACTTGAA : 1700501 20 : sSerAlaGlyIleTrpValIleGlyAsnAspAlaGluGluArgGlnArgLysPheA : 38 |! ! !|||.!!|||:!! !! !!.! !!! !|||:!!|||!:!|||||||||| sIleIleGlyPheTrpLeuAlaAspThrTyrGluGluLysArgArgArgLysPheA 1700502 : AATCATCGGCTTCTGGTTAGCTGACACTTACGAGGAGAAACGTCGAAGAAAGTTCG : 1700558 39 : laValPheTyrThrLeuAlaAlaLeuIleTyrGlyIleTyrValAsnAlaValAsp : 56 || ! !! !|||:!! ! !|||!!:! !!.!:!: :!!.!.!.! !||| laGlnAsnCysThrIleLeuMetLeuMetCysAlaValLeuLeuGluValArgAsp 1700559 : CGCAGAATTGCACGATACTTATGCTTATGTGCGCTGTGCTGCTTGAGGTGAGGGAT : 1700612 57 : IleTyrHis : 59 ||||||||| IleTyrHis 1700613 : ATCTATCAC : 1700623 vulgar: AmOr74FIX 0 59 . KQ414915.1 1700446 1700623 + 100 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1700447 1700623 100 + . gene_id 16 ; sequence AmOr74FIX ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1700447 1700623 . + . KQ414915.1 exonerate:protein2genome:local exon 1700447 1700623 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1700447 1700623 100 + . alignment_id 16 ; Query AmOr74FIX ; Align 1700447 1 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 0 -> 59 Target range: 1704894 -> 1705071 1 : MetGlnGlyGluGlyTyrThrAspValSerLeuLysValSerGlnPheLeuLeuLy : 19 ||| ..!:!! ! !!! !|||||||||:!!!..|||!!! |||! !||||| MetThrSerLysLysAsnArgAspValSerValSerValThrAlaPheTyrLeuLy 1704895 : ATGACTTCGAAGAAGAACAGGGACGTATCAGTGAGCGTCACAGCTTTCTACTTGAA : 1704949 20 : sSerAlaGlyIleTrpValIleGlyAsnAspAlaGluGluArgGlnArgLysPheA : 38 |! ! !|||.!!|||:!! !! !!.! !!! !|||:!!|||!:!|||||||||| sIleIleGlyPheTrpLeuAlaAspThrTyrGluGluLysArgArgArgLysPheA 1704950 : AATCATCGGCTTCTGGTTAGCTGACACTTACGAGGAGAAACGTCGAAGAAAGTTCG : 1705006 39 : laValPheTyrThrLeuAlaAlaLeuIleTyrGlyIleTyrValAsnAlaValAsp : 56 || ! !! !|||:!! ! !|||!!:! !!.!:!: :!!.!.!.! !||| laGlnAsnCysThrIleLeuMetLeuMetCysAlaValLeuLeuGluValArgAsp 1705007 : CGCAGAATTGCACGATACTTATGCTTATGTGCGCTGTGCTGCTTGAGGTGAGGGAT : 1705060 57 : IleTyrHis : 59 ||||||||| IleTyrHis 1705061 : ATCTATCAC : 1705071 vulgar: AmOr74FIX 0 59 . KQ414915.1 1704894 1705071 + 100 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1704895 1705071 100 + . gene_id 17 ; sequence AmOr74FIX ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1704895 1705071 . + . KQ414915.1 exonerate:protein2genome:local exon 1704895 1705071 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1704895 1705071 100 + . alignment_id 17 ; Query AmOr74FIX ; Align 1704895 1 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 1163 Query range: 0 -> 403 Target range: 1704894 -> 1708493 1 : MetLysSerLysGluValArgAspLeuSerIleThrValThrAlaPheTyrMetLy : 19 |||! ||||||:!! !||||||:!!|||:!:!:!|||||||||||||||:!!|| MetThrSerLysLysAsnArgAspValSerValSerValThrAlaPheTyrLeuLy 1704895 : ATGACTTCGAAGAAGAACAGGGACGTATCAGTGAGCGTCACAGCTTTCTACTTGAA : 1704949 20 : sIleAlaGlyPheTrpThrSerThrAsnTyrValGluGluArgArgArgAsnValT : 38 |||| !||||||||| !:!! !!.!|||! !|||:!!|||||||||!!. !!. sIleIleGlyPheTrpLeuAlaAspThrTyrGluGluLysArgArgArgLysPheA 1704950 : AATCATCGGCTTCTGGTTAGCTGACACTTACGAGGAGAAACGTCGAAGAAAGTTCG : 1705006 39 : hrMetSerTyrThrLeuPheAlaIleLeuPheAlaAlaThrThrGluAlaArgAsp : 56 !!..!!:!! !|||:!!.!! !:!!:!!! !|||!.! ! !|||!.!|||||| laGlnAsnCysThrIleLeuMetLeuMetCysAlaValLeuLeuGluValArgAsp 1705007 : CGCAGAATTGCACGATACTTATGCTTATGTGCGCTGTGCTGCTTGAGGTGAGGGAT : 1705060 57 : LeuTyrPheSerTrpGlyAsnPheSer >>>> Target Intron 1 >>>> : 66 :!!||| !! !||||||:!!|||.!! 1391 bp IleTyrHisIleTrpGlyAspPheGly++ ++ 1705061 : ATCTATCACATCTGGGGAGATTTCGGCgt.........................ag : 1706479 67 : AspSerIleTyrValAlaCysAsnIleIleThrValSerLeuValLeuIleLysLe : 84 ! ! !:!!|||||| !|||||||||:!!||||||.!!:!! !|||.!!|||:! AlaValValTyrValMetCysAsnIleLeuThrValGlyIleSerLeuPheLysIl 1706480 : GCCGTTGTTTACGTAATGTGCAACATTCTAACAGTGGGCATAAGTTTGTTCAAGAT : 1706535 85 : uLeuThrSerPheIleTyrAsnGluGluLeuLeuGlyIleIleArgTyrAlaLysT : 103 !|||..!|||.!.! ...|||:::...||| :::|||:::||||||!:!| eLeuValSerMetArgSerLysGluLysPheLeuGluLeuIleLysTyrAlaArgT 1706536 : CTTGGTCTCGATGAGGagtaaggaaaaatttttggaattaattaaatacgcCAGAA : 1706592 104 : hrAsnPheTrpHisSerAsnTyrAspThrCysGluLysSerIleMetAsnLysCys : 121 |||||||||||||||||:!!||||||:!! |||:!!! !|||:!!|||:!!||| hrAsnPheTrpHisSerAspTyrAspSerGlnGluGlnMetIleValAsnGluCys 1706593 : CGAATTTCTGGCACTCGGATTATGACTCGCAGGAGCAAATGATTGTGAACGAGTGT : 1706646 122 : GlnArgThrCysAsnTyrLeuValPheValPheThrPhePheAlaGlnGlyThrVa : 140 :!!|||:!!|||!..!:!|||:!!! !||||||!.!|||||||||.!.|||||||| LysArgSerCysThrPheLeuIleCysValPheAsnPhePheAlaAsnGlyThrVa 1706647 : AAACGTTCTTGTACATTCCTCATATGCGTGTTTAATTTCTTCGCTAATGGGACAGT : 1706703 141 : lLeuGlyPheIleLeuArgProIleLeu{V} >>>> Target Intron 2 >> : 150 |! !|||!:!|||:!!|||||||||:!!{!} 266 bp lSerGlyTyrIleIleArgProIleVal{G}++ 1706704 : GTCTGGATACATAATCAGGCCAATTGTA{G}gt....................... : 1706736 151 : >> {al}AsnArgGlyLysAsnGluSerAspArgIleLeuProPheAsnMetTrp : 166 { !}!:: ||||||||||||||||||||||||||| ! !!|||.!.||| ++{lu}SerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrp 1706737 : ..ag{AA}AgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGG : 1707047 167 : LeuGluLeuProLeuSerIleThrProTyrPheGluValMetPhePheValGln : 185 :!!!!:!!!||| !!!!!!:|||||||||!:!|||:!!:!:||| !||| IleAspPheProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707048 : ATTGACTTTCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt : 1707104 186 : >>>> Target Intron 3 >>>> ValValPheValTyrHisValCysValCy : 194 276 bp ||| !!.!!||| :!!||||||:!! ! ++ValPheIleValMetTyrValCysIleSe 1707105 : .........................agGTTTTTATCGTAATGTACGTTTGCATAAG : 1707407 195 : sTyrHisCysPheAspSerLeuLeuCysIleLeuAsnLeuHisThrAlaSerGlnP : 213 !|||! !|||.!!|||!:!!!!||||||!!::!!|||||||||||||||!!!|||| rTyrLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnP 1707408 : CTACCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAAT : 1707464 214 : heArgIleLeuGlnHisArgPheAlaAsnThrCysAsn<->GluLysArgGlyLys : 230 ||||||||||||||:!!|||.!.:!!|||..!|||..! .!.:!!|||... heArgIleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAsp 1707465 : TTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcgat : 1707518 231 : ArgAspGluAspGluGluSerAlaLeuSerPheTyrGluTyrSerLysLeuLysAl : 249 ::: ... ::: !!:!! !||| ! ! |||:!!|||!!!||| LysIleSerLysLysThrProSerAsnSerAspGluCysTyrAlaLysPheLysAs 1707519 : aaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAAA : 1707575 250 : aTyrIleArgGlnHisGlnAlaLeuIleGluTyrCysLysLysLeuGluGlnValP : 268 !! !|||!:!|||||||||||||||||||||||||||!!.:!!|||:!!:!!|||| nCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluValP 1707576 : TTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGGTGT : 1707632 269 : heAsnSerIleValPheGlyGlnValLeuLeuPheSerLeuLeuMetCysLeuAsp : 286 ||..!! !.!!|||.!!!.!|||||||||||||||||||||||||||||||||||| heGlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAsp 1707633 : TCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGAT : 1707686 287 : GlyTyrLeuIleLeuMet >>>> Target Intron 4 >>>> GluGluThr : 295 |||||||||:!: ||| 457 bp |||!!:||| GlyTyrLeuVal---Met++ ++GluAspThr 1707687 : GGATATTTGGTG---ATGgt.........................agGAAGATACT : 1708167 296 : ProPheGlyArgArgValThrPheThrPheHisIleThrGlyCysMetCysGlnLe : 314 |||.!! !!:!|||:!!|||||| !||||||:!!|||||||||:!!|||||||| ProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLe 1708168 : CCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACT : 1708224 315 : uLeuMetPheThrTyrSerCysAspCysLeuIleArgAspSerMetAspIleAlaA : 333 |||||||||||||||||||||||||||||||||||||!!:|||:!!:!!:!:|||: uLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaA 1708225 : GTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCA : 1708281 334 : spAlaAlaTyrAsnCysSerTrpSerPheLeuProMetAspLysTyrGlyLysMet : 351 !!||| !|||:!!|||||||||! ! !||||||||||||!:!! !|||::!||| snAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMet 1708282 : ATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATG : 1708335 352 : IleArgArgAspLeuMetPheValIleThrArgSerArgThrProCysCysLeuTh : 370 :!:|||!:!||||||! ||||||||| !|||||||||..!|||||||||||||| LeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuTh 1708336 : CTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCAC : 1708392 371 : rAlaCysGlyPhePheAlaValSerLeuGluThrTyrThrLysValLeuSerThrA : 389 |||||||||||||||| !!|||||||||||||||||||||..!|||:!! !:!!. rAlaCysGlyPhePheProValSerLeuGluThrTyrThrSerValIleHisSerT 1708393 : TGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGGTAATTCATTCAA : 1708449 390 : laIleSerIlePheThrIleLeuLysArgTyrGluLysGluPhe : 403 !!.!! !! .!.:!!!!:|||:!! !!::::: ||| hrPheHisThrIleSerMetLeuGluTyrPheLysTyrPhePhe 1708450 : CATTTCACACGATATCGATGTTAGAGTATTTcaagtactttttt : 1708493 vulgar: AmOr76 0 403 . KQ414915.1 1704894 1708493 + 1163 M 65 195 5 0 2 I 0 1387 3 0 2 M 84 252 S 0 1 5 0 2 I 0 262 3 0 2 S 1 2 M 34 102 5 0 2 I 0 272 3 0 2 M 41 123 G 0 3 M 65 195 G 1 0 M 1 3 5 0 2 I 0 453 3 0 2 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1704895 1708493 1163 + . gene_id 1 ; sequence AmOr76 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1704895 1705089 . + . KQ414915.1 exonerate:protein2genome:local exon 1704895 1705089 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1705090 1705091 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1705090 1706480 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1706479 1706480 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1706481 1706733 . + . KQ414915.1 exonerate:protein2genome:local exon 1706481 1706733 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1706734 1706735 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1706734 1706999 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1706998 1706999 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707000 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707000 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 3 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708493 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708493 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1704895 1708493 1163 + . alignment_id 1 ; Query AmOr76 ; Align 1704895 1 195 ; Align 1706481 66 252 ; Align 1707002 151 102 ; Align 1707380 185 123 ; Align 1707506 226 195 ; Align 1707701 292 3 ; Align 1708161 293 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 962 Query range: 0 -> 398 Target range: 1692073 -> 1696254 1 : MetLysSerLysGluValArgAspLeuSerIleThrValThrAlaPheTyrMetLy : 19 ||| ! ! ! !:!! !!:!|||:!!||||||..! !:!! !|||! ||||| MetHisLeuValGlnSerLysAspIleSerIleValTrpSerPhePheLeuMetLy 1692074 : ATGCATTTAGTGCAGAGTAAAGATATCTCGATCGTTTGGTCGTTCTTTTTGATGAA : 1692128 20 : sIleAlaGlyPheTrpThrSerThrAsnTyrValGluGluArgArgArgAsnValT : 38 ||||!.!|||.!.||| !:!!.!!:!! ! !.!|||:!!|||||||||||| !!. sIleValGlyLeuTrpLeuAlaAlaAspGluAlaGluGlnArgArgArgAsnPheA 1692129 : AATCGTAGGTCTGTGGCTAGCCGCCGACGAGGCTGAACAACGTCGGAGAAATTTCG : 1692185 39 : hrMetSerTyrThrLeuPheAlaIleLeuPheAlaAlaThrThrGluAlaArgAsp : 56 !!:!!! !||||||||| !||||||!!!.!!|||:!! !! !! ! !|||||| laLeuIleTyrThrLeuAsnAlaIlePheIleAlaSerCysIleAlaMetArgAsp 1692186 : CGCTGATTTACACGCTGAACGCGATTTTTATCGCTTCGTGTATAGCAATGAGAGAT : 1692239 57 : LeuTyrPheSerTrpGlyAsnPheSer >>>> Target Intron 1 >>>> : 66 :!!|||!:!|||||||||||| ! !:! 1732 bp IleTyrTyrSerTrpGlyAsnValAsn++ ++ 1692240 : ATATACTATTCCTGGGGAAACGTGAACgt.........................ag : 1693999 67 : AspSerIleTyrValAlaCysAsnIleIleThrValSerLeuValLeuIleLysLe : 84 |||!!!|||||||||!.!|||||||||:!! !:!!:!!:!!|||!!!.!!|||:! AspCysIleTyrValGlyCysAsnIleLeuTyrLeuAlaIleValPhePheLysIl 1694000 : GACTGCATTTACGTCGGGTGCAACATTTTATACCTAGCGATCGTTTTCTTCAAGAT : 1694055 85 : uLeuThrSerPheIleTyrAsnGluGluLeuLeuGlyIleIleArgTyrAlaLysT : 103 !|||..!! !!:!! :!!!.. !|||!!!! !|||:!!||||||!:!.!!:!! eLeuValLeuTyrLysHisArgIleGluPheTyrGlyLeuIleArgPheThrGlnG 1694056 : CCTCGTTTTGTACAAGCACAGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAG : 1694112 104 : hrAsnPheTrpHisSerAsnTyrAspThrCysGluLysSerIleMetAsnLysCys : 121 !!!.|||||||||! !:!!|||:!!:!! ! ||||||! !|||:!:::!:!!||| luLysPheTrpHisPheAspTyrAsnSerArgGluLysLeuIleLeuSerGluCys 1694113 : AGAAATTCTGGCATTTCGACTATAATTCACGGGAGAAGTTAATTTTATCCGAGTGC : 1694166 122 : GlnArgThrCysAsnTyrLeuValPheValPheThrPhePheAlaGlnGlyThrVa : 140 :!!!:!! !|||!.! !!!!:!! !!!.!|||!:!|||! !.!!||||||||| LysLysIleCysThrValPheIleValAlaPheSerPheCysThrGlnGlyThrCy 1694167 : AAGAAGATATGTACCGTTTTCATCGTTGCCTTCAGCTTCTGTACTCAGGGCACGTG : 1694223 141 : lLeuGlyPheIleLeuArgProIleLeu{V} >>>> Target Intron 2 >> : 150 ! !|||!:!:!!:!!! !|||||||||{!} 100 bp sAlaGlyTyrValValThrProIleLeu{A}++ 1694224 : TGCTGGTTACGTAGTGACACCTATTTTA{g}gt....................... : 1694256 151 : >> {al}AsnArgGlyLysAsnGluSerAspArgIleLeuProPheAsnMetTrp : 166 {.!}||| !|||||||||:!!|||!!:|||!!:|||||||||||||||||| ++{la}AsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTrp 1694257 : ..ag{CA}AATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTGG : 1694401 167 : LeuGluLeuProLeuSerIleThrProTyrPheGluValMetPhePheValGln : 185 :!!!!:!!!||| !.!!:!::!!||||||!:!||||||:!:|||.!!:!!||| ValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGln++ 1694402 : GTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGgt : 1694458 186 : >>>> Target Intron 3 >>>> ValValPheValTyrHisValCysValCy : 194 409 bp ..!:!!! !|||||||||||| !!:!!|| ++ThrLeuCysValTyrHisValGlyIleCy 1694459 : .........................agACACTTTGCGTGTACCATGTCGGTATATG : 1694894 195 : sTyrHisCysPheAspSerLeuLeuCysIleLeuAsnLeuHisThrAlaSerGlnP : 213 |||| |||||||||!:!:!!||| !!:!!||||||||||||..!|||!!!|||| sTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGlnP 1694895 : TTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAAT : 1694951 214 : heArgIleLeuGlnHisArgPheAlaAsnThrCysAsn<-><->GluLysArg<-> : 229 ||||||||||||||:!!|||||| !||| ! !!||| ||||||!:! heArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLysGlnThr 1694952 : TTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAACA : 1695005 230 : <->GlyLysArgAspGluAspGluGluSerAlaLeuSerPheTyrGluTyrSerLy : 246 |||:::... ||| ! !!! !!!!!!! !! !!...|||! !:! AspGlyArgGluLeuGluIleGlyTyrThrAsnPheThrValAspSerTyrLeuGl 1695006 : GACGGTcgagaattggaaattggtTACACAAATTTCACAGTCGATAGTTACTTACA : 1695062 247 : sLeuLysAlaTyrIleArgGlnHisGlnAlaLeuIleGluTyrCysLysLysLeuG : 265 !||||||::!! !:!:!:! ! ||||||||||||! !! |||||||||||||||| nLeuLysSerCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeuG 1695063 : ATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTGG : 1695119 266 : luGlnValPheAsnSerIleValPheGlyGlnValLeuLeuPheSerLeuLeuMet : 283 ||.!.:!!|||:::! !:!!|||.!!||||||||||||!!!.!.:!!:!!:!!:!: luAsnIlePheSerLeuLeuValLeuGlyGlnValLeuPheLeuAlaMetValLeu 1695120 : AGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTACTT : 1695173 284 : CysLeuAspGlyTyrLeuIleLeuMet >>>> Target Intron 4 >>>> : 293 ||||||! ||||||! !:!!!!!:!! 415 bp CysLeuValGlyTyrGlnLeuPheLeu++ ++ 1695174 : TGCCTCGTGGGATATCAGCTATTTCTGgt.........................ag : 1695616 294 : GluGluThrProPheGlyArgArgValThrPheThrPheHisIleThrGlyCysMe : 311 !!!::!!||| !..!|||!.!||| !!!...!.!!:!!:!:.!!||| !:! ThrAspSerProProSerArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrLe 1695617 : ACAGACTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTTT : 1695672 312 : tCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgAspSerMetA : 330 !|||||||||!!!||||||||||||||||||||| !!|||! !|||!!:||||||| uCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGluSerMetA 1695673 : GTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATGG : 1695729 331 : spIleAlaAspAlaAlaTyrAsnCysSerTrpSerPheLeuProMetAspLysTyr : 348 ||:!!::! |||!.!!:! ! !!|||:!! !||||||||||||!:! !! spValSerArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAspArgAsn 1695730 : ACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAAT : 1695783 349 : GlyLysMetIleArgArgAspLeuMetPheValIleThrArgSerArgThrProCy : 367 ||||||! :!:|||!:!..!:!!:!:.!.||||||! !||||||!.!! ! !|| GlyLysSerValArgGlnSerMetLeuMetValIleMetArgSerAsnArgCysCy 1695784 : GGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTTG : 1695840 368 : sCysLeuThrAlaCysGlyPhePheAlaValSerLeuGluThrTyrThrLys >> : 385 ||||||||||||| !!||||||||| !!||||||||||||||||||||| ! sCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrGly++ 1695841 : CTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGgt.. : 1695896 386 : >> Target Intron 5 >>>> ValLeuSerThrAlaIleSerIlePheThrI : 395 319 bp |||||||||||||||!!:||| !||||||: ++ValLeuSerThrAlaMetSerTyrPheThrL 1695897 : .......................agGTCCTCAGCACTGCAATGTCATACTTTACAC : 1696243 396 : leLeuLysArg : 398 !!|||!:!!:! euLeuArgGln 1696244 : TACTGAGACAA : 1696254 vulgar: AmOr76 0 398 . KQ414915.1 1692073 1696254 + 962 M 65 195 5 0 2 I 0 1728 3 0 2 M 84 252 S 0 1 5 0 2 I 0 96 3 0 2 S 1 2 M 34 102 5 0 2 I 0 405 3 0 2 M 41 123 G 0 6 M 3 9 G 0 6 M 64 192 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1692074 1696254 962 + . gene_id 2 ; sequence AmOr76 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1692074 1692268 . + . KQ414915.1 exonerate:protein2genome:local exon 1692074 1692268 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1692269 1692270 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1692269 1694000 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1693999 1694000 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694001 1694253 . + . KQ414915.1 exonerate:protein2genome:local exon 1694001 1694253 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694254 1694255 . + . intron_id 2 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1694254 1694353 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1694352 1694353 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694354 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694354 1694457 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 12 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 5 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 5 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 4 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696254 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696254 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1692074 1696254 962 + . alignment_id 2 ; Query AmOr76 ; Align 1692074 1 195 ; Align 1694001 66 252 ; Align 1694356 151 102 ; Align 1694867 185 123 ; Align 1694996 226 9 ; Align 1695011 229 192 ; Align 1695618 293 276 ; Align 1696213 385 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 725 Query range: 0 -> 385 Target range: 1685751 -> 1689747 1 : MetLysSerLysGluValArgAspLeuSerIleThrValThrAlaPheTyrMetLy : 19 |||:!!:!!! !:!! !||||||:!!|||:!!! ||| :::|| MetGlnAlaThrLysTyrArgAspIleSerLeuLysCysGlyIlePheLeuLeuLy 1685752 : ATGCAGGCGACAAAATACAGGGATATTTCCCTCAAgtgtggaatttttcttttgaa : 1685806 20 : sIleAlaGlyPheTrpThrSerThrAsnTyrValGluGluArgArgArgAsnValT : 38 |:::..!|||.!!|||! !|||! !||| !||||||||||||||||||!.. !!| sLeuValGlyLeuTrpMetSerMetAsnSerValGluGluArgArgArgArgPheT 1685807 : attagtCGGCCTCTGGATGTCCATGAACAGCGTCGAGGAGCGTCGAAGGAGGTTCA : 1685863 39 : hrMetSerTyrThrLeuPheAlaIleLeuPheAlaAlaThrThrGluAlaArgAsp : 56 ||:!!! ! :!!:!!||||||:!!! !!:!!.!!.! !..!.!.!.!!.!||| hrLeuPheGlySerValPheAlaLeuSerTyrGlyValTyrValAsnValAsnAsp 1685864 : CGTTGTTCGGATCAGTTTTCGCCCTTTCTTACGGCGTTTACGTGAACGTAAACGAT : 1685917 57 : LeuTyrPheSerTrpGlyAsnPheSer >>>> Target Intron 1 >>>> : 66 :!! ! !|||!::! !:!!.!.||| 1431 bp IleLeuHisSerPheAspAspLeuSer++ ++ 1685918 : ATTCTTCACAGCTTCGATGATCTGAGCgt.........................ag : 1687376 67 : AspSerIleTyrValAlaCysAsnIleIleThrValSerLeuValLeuIleLysLe : 84 !!!!!|||!:!:!!.!!||||||! !:!: !:!! !|||!.!:!!.!!|||:! HisCysIlePheLeuThrCysAsnThrLeuCysIleLeuLeuAlaIlePheLysIl 1687377 : cATTGCATCTTTCTGACTTGCAACACACTGTGCATTCTTCTGGCGATATTTAAGAT : 1687432 85 : uLeuThrSerPheIleTyrAsnGluGluLeuLeuGlyIleIleArgTyrAlaLysT : 103 !!!!! ! ! !! !:!!!.. !|||!!! !! !|||:!! !||||||:!!! ePheIleLeuSerAsnHisArgThrGluPheLysGluIleValLeuTyrAlaGlnL 1687433 : TTTCATACTAAGCAATCACAGAACGGAATTCAAGGAGATAGTCTTGTACGCGCAGA : 1687489 104 : hrAsnPheTrpHisSerAsnTyrAspThrCysGluLysSerIleMetAsnLysCys : 121 !:!!|||||||||..!||||||..!! ! |||!:! !:!! ... ! ||| ysHisPheTrpHisAspAsnTyrSerLysGluGluArgValLeuTyrGlyAspCys 1687490 : AGCATTTTTGGCATGATAATTACAGCAAAGAGGAGAGGGTGCTTTATGGAGATTGC : 1687543 122 : GlnArgThrCysAsnTyrLeuValPheValPheThrPhePheAlaGlnGlyThrVa : 140 |||||| !|||!!. ! !|||.!.:!!.!. !|||.!!.!!|||!.!:!!:! GlnArgPheCysLysLeuTrpValIleLeuIleCysPheLeuThrGlnAlaSerLe 1687544 : CAGAGGTTCTGCAAACTATGGGTCATACTAATATGTTTCCTTACGCAAGCCTCTTT : 1687600 141 : lLeuGlyPheIleLeuArgProIleLeu{V} >>>> Target Intron 2 >> : 150 !:!! !!:!.!!:!!! !|||:!! !{!} 424 bp uValPheTyrPheValThrProLeuThr{A}++ 1687601 : AGTGTTCTACTTTGTCACACCACTCACT{G}gt....................... : 1687633 151 : >> {al}AsnArgGlyLysAsnGluSerAspArgIleLeuProPheAsnMetTrp : 166 {.!}|||! !.!!::!|||:!!|||||||||:!!|||||||||!!.|||||| ++{la}AsnMetSerArgAsnLysSerAspArgValLeuProPheLysMetTrp 1687634 : ..ag{CA}AATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTGG : 1688102 167 : LeuGluLeuProLeuSerIleThrProTyrPheGluValMetPhePheValGln : 185 :!!!!:! !||||||||| !|||||||||!:!|||:!!|||||| ! !!||| ValAspTrpProLeuSerAspThrProTyrTyrGluLeuMetPheThrPheGln++ 1688103 : GTCGATTGGCCGCTATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAGgt : 1688159 186 : >>>> Target Intron 3 >>>> ValValPheValTyrHisValCysValCy : 194 179 bp !.!:!!! !||||||!!.:!! !!!.!.. ++AlaLeuCysValTyrGlnIleGlyAlaAl 1688160 : .........................agGCGCTGTGCGTGTATCAAATCGGCGCCGC : 1688365 195 : sTyrHisCysPheAspSerLeuLeuCysIleLeuAsnLeuHisThrAlaSerGlnP : 213 !||| !|||! !|||!!!!!!!!!|||!!:||||||:!!|||..! !!!!|||| aTyrIleCysSerAspThrPhePheCysMetLeuAsnMetHisValIleCysGlnP 1688366 : CTATATCTGCTCCGACACGTTTTTCTGCATGCTGAACATGCACGTGATCTGCCAGT : 1688422 214 : heArgIleLeuGlnHisArgPheAlaAsnThrCysAsnGluLysArgGlyLysArg : 231 |||||||||||.!.:!!|||.!. !|||! !!! ! ! !! !::!! ! heArgIleLeuAsnTyrArgLeuLeuAsnMetTrpProValIleAspGluArgThr 1688423 : TCCGTATACTAAATTACAGACTGTTGAACATGTGGCCGGTCATCGACGAGCGAACG : 1688476 232 : AspGluAspGluGluSerAlaLeuSerPheTyrGluTyrSerLysLeuLysAlaTy : 250 :!! ! !||| ! !!! ! !!!! |||!!!||||||! !! !! AsnMetThrGluTyrThrAsnLysCys---------TyrThrLysLeuIleAspCy 1688477 : AACATGACCGAATACACGAACAAATGT---------TACACCAAGCTGATAGATTG : 1688524 251 : rIleArgGlnHisGlnAlaLeuIleGluTyrCysLysLysLeuGluGlnValPheA : 269 !|||!:!.!.||||||:!!|||||||||!:!||| !|||||||||.!.|||!:!! sIleLysAsnHisGlnSerLeuIleGluPheCysValLysLeuGluAsnValTyrT 1688525 : CATCAAAAATCATCAGTCGTTGATCGAGTTCTGCGTGAAACTCGAGAACGTGTACA : 1688581 270 : snSerIleValPheGlyGlnValLeuLeuPheSerLeuLeuMetCysLeuAspGly : 287 ..! !! !:!!.!!|||!!.:!!:!!:!!||||||||||||||||||!!!||| ! hrLeuThrIleLeuGlyHisIleValValPheSerLeuLeuMetCysPheAspThr 1688582 : CGTTGACTATACTCGGCCACATAGTGGTCTTCAGCTTGTTGATGTGCTTCGACACG : 1688635 288 : TyrLeuIleLeuMet >>>> Target Intron 4 >>>> GluGluThrPro : 296 ||| !:!!:!!:!! 816 bp ! !:!!..!||| TyrGluValValLeu++ ++AlaLysValPro 1688636 : TACGAGGTAGTTCTGgt.........................agGCAAAGGTACCT : 1689478 297 : PheGlyArgArgValThrPheThrPheHisIleThrGlyCysMetCysGlnLeuLe : 315 ! !! !|||:!!! !||| !||||||!!:! !||| !!.!. !!..::::: ThrThrThrArgLeuIlePheLeuPheHisMetIleGlySerPheIleHisIleIl 1689479 : ACCACGACGCGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCacataat : 1689535 316 : uMetPheThrTyrSerCysAspCysLeuIleArgAspSerMetAspIleAlaAspA : 334 :...|||||||||||||||! ! !!||||||..!!!:||||||||||||||| | ePhePheThrTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleAlaThrA 1689536 : tttcttcacgtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCAACAG : 1689592 335 : laAlaTyrAsnCysSerTrpSerPheLeuProMetAspLysTyrGlyLysMetIle : 352 ||.!!||| ! ! !|||!!! !!|||||||||:!!||| !|||||||||||| laThrTyrAlaGlyMetTrpThrValLeuProMetAsnLysValGlyLysMetIle 1689593 : CAACGTATGCAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAATGATA : 1689646 353 : ArgArgAspLeuMetPheValIleThrArgSerArgThrProCysCysLeuThrAl : 371 ||| !!:!!:!!! !!!.:!!! !..!|||||| ! !|||||||||:!!||||| ArgGlyAsnMetLysLeuMetThrValArgSerLeuGlnProCysCysIleThrAl 1689647 : CGAGGAAATATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAACTGC : 1689703 372 : aCysGlyPhePheAlaValSerLeuGluThrTyrThrLysVal : 385 | !!||||||||| !!|||||||||:!!||| !||| !||| aGlyGlyPhePheProValSerLeuLysThrAlaThrAlaVal 1689704 : TGGTGGATTCTTTCCTGTCTCCTTGAAAACTGCTACCGCGGTA : 1689747 vulgar: AmOr76 0 385 . KQ414915.1 1685751 1689747 + 725 M 65 195 5 0 2 I 0 1427 3 0 2 M 84 252 S 0 1 5 0 2 I 0 420 3 0 2 S 1 2 M 34 102 5 0 2 I 0 175 3 0 2 M 56 168 G 3 0 M 49 147 5 0 2 I 0 812 3 0 2 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1685752 1689747 725 + . gene_id 3 ; sequence AmOr76 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1685752 1685946 . + . KQ414915.1 exonerate:protein2genome:local exon 1685752 1685946 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1685947 1685948 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1685947 1687377 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1687376 1687377 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1687378 1687630 . + . KQ414915.1 exonerate:protein2genome:local exon 1687378 1687630 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1687631 1687632 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1687631 1688054 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1688053 1688054 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1688055 1688158 . + . KQ414915.1 exonerate:protein2genome:local exon 1688055 1688158 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688159 1688160 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688159 1688337 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1688336 1688337 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1688338 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688338 1688652 . + . insertions 0 ; deletions 3 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689747 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689747 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1685752 1689747 725 + . alignment_id 3 ; Query AmOr76 ; Align 1685752 1 195 ; Align 1687378 66 252 ; Align 1688057 151 102 ; Align 1688338 185 168 ; Align 1688506 244 147 ; Align 1689469 293 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 340 Query range: 147 -> 293 Target range: 1699025 -> 1699974 148 : IleLeuValAsnArgGlyLysAsnGluSerAspArgIleLeuProPheAsnMetTr : 166 ||||||...||| |||:::|||...|||||||||:!:||||||||||||||||| IleLeuAlaAsnIleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTr 1699026 : ATTTTAgcaaatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTG : 1699080 167 : pLeuGluLeuProLeuSerIleThrProTyrPhe{Gl} >>>> Target Intr : 178 |:!!!!:||||||||||||:!::!!||| !:!{||} 499 bp pValAspLeuProLeuSerValSerProThrTyr{Gl}-- 1699081 : GGTTGATTTGCCGCTGTCTGTGTCACCAACGTAC{GA}aa................ : 1699120 179 : on 1 >>>> {u}ValMetPhePheValGlnValValPheValTyrHisValCys : 192 {|}! !.!. ! |||!.!||||||:!!! !:!!||||||||| !! ++{u}AspPheValPheAlaGlnValLeuSerLeuTyrHisValGly 1699121 : .........ag{A}GATTTTGTGTTTGCACAGGTTCTGTCTTTGTACCACGTTGGT : 1699657 193 : ValCysTyrHisCysPheAspSerLeuLeuCysIleLeuAsnLeuHisThrAlaSe : 211 ||||||||| !|||||||||!:!|||||||||:!::!!|||||||||.!!|||!! ValCysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaTh 1699658 : GTATGTTACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTAC : 1699714 212 : rGlnPheArgIleLeuGlnHisArgPheAlaAsnThrCysAsnGluLysArgGlyL : 230 !||||||||||||||||||:!!|||!!.:!!||| ! !!:!! !!!.||| !: rGlnPheArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysG 1699715 : TCAATTTCGTATACTGCAATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGC : 1699771 231 : ysArgAspGluAspGluGluSerAlaLeu<-><->SerPheTyrGlu<-><->Tyr : 244 !! !|||!!::!!|||...|||||| ! !!||| ||| ||| lnValAspAspAsnGluSerSerAlaAlaLeuSerArgPheAlaGluAsnCysTyr 1699772 : AAGTAGATGACAATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTAT : 1699825 245 : SerLysLeuLysAlaTyrIleArgGlnHisGlnAlaLeuIleGluTyrCysLysLy : 263 !.! !!!!||| !! !:!!|||||||||||| !! !||| !|||||| ! !: LysAlaPheLysAsnCysValArgGlnHisGlnAsnHisIleThrTyrCysHisAr 1699826 : AAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCATATCACGTACTGTCACAG : 1699882 264 : sLeuGluGlnValPheAsnSerIleValPheGlyGlnValLeuLeuPheSerLeuL : 282 !|||.!.:!!:!!|||!.. !||||||.!!|||!!.:!!|||:!!|||||||||| gLeuAsnGluIlePheThrValIleValLeuGlyHisIleLeuValPheSerLeuL 1699883 : ATTGAACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGCCTTC : 1699939 283 : euMetCysLeuAspGlyTyrLeuIleLeuMetGlu : 293 ||!!:||||||! !|||!:!! !:!:|||:!:||| euIleCysLeuValGlyPheGlnValLeuValGlu 1699940 : TGATATGTCTGGTTGGATTCCAAGTGCTCGTAGAA : 1699974 vulgar: AmOr76 147 293 . KQ414915.1 1699025 1699974 + 340 M 30 90 S 0 2 5 0 2 I 0 495 3 0 2 S 1 1 M 61 183 G 0 6 M 4 12 G 0 6 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699026 1699974 340 + . gene_id 4 ; sequence AmOr76 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1699026 1699117 . + . KQ414915.1 exonerate:protein2genome:local exon 1699026 1699117 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699118 1699119 . + . intron_id 1 ; splice_site "AA" KQ414915.1 exonerate:protein2genome:local intron 1699118 1699616 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699615 1699616 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699617 1699974 . + . KQ414915.1 exonerate:protein2genome:local exon 1699617 1699974 . + . insertions 12 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699026 1699974 340 + . alignment_id 4 ; Query AmOr76 ; Align 1699026 148 90 ; Align 1699618 179 183 ; Align 1699807 240 12 ; Align 1699825 244 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 335 Query range: 297 -> 398 Target range: 1712384 -> 1712687 298 : GlyArgArgValThrPheThrPheHisIleThrGlyCysMetCysGlnLeuLeuMe : 316 |||!:!!:!::: ||||||||||||::!.!!||||||||||||||||||||||| GlyLysGlnMetIlePheThrPheHisLeuAlaGlyCysMetCysGlnLeuLeuMe 1712385 : GGTAAACAGAtgattttcacgtttcacctAGCGGGATGTATGTGTCAATTGCTGAT : 1712439 317 : tPheThrTyrSerCysAspCysLeuIleArgAspSerMetAspIleAlaAspAlaA : 335 ||||||||||||||||||||||:!!|||! !!!:|||:!!:!!:!:.!!!!:|||! tPheThrTyrSerCysAspCysIleIleThrGluSerLeuAsnValThrGluAlaV 1712440 : GTTTACGTACAGCTGCGATTGTATAATAACGGAAAGTTTGAACGTGACGGAAGCGG : 1712496 336 : laTyrAsnCysSerTrpSerPheLeuProMetAspLysTyrGlyLysMetIleArg : 353 .!|||:!! ! !!||| !! !|||||||||..!! ! |||!:!||||||||| alTyrAspGlyProTrpProArgLeuProMetSerThrArgGlyArgMetIleArg 1712497 : TGTACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGAAGAATGATAAGG : 1712550 354 : ArgAspLeuMetPheValIleThrArgSerArgThrProCysCysLeuThrAlaCy : 372 !:!||||||!!:.!!||||||! !|||||||||..!|||||||||||||||||| ! LysAspLeuIleLeuValIleIleArgSerArgValProCysCysLeuThrAlaAr 1712551 : AAGGATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTGCTTGACCGCCAG : 1712607 373 : sGlyPhePheAlaValSerLeuGluThrTyrThrLysValLeuSerThrAlaIleS : 391 |||||||||!.!:!!||||||||||||||||||||||||:!!..!:!! ! !: gGlyPhePheValIleSerLeuGluThrTyrThrLysValIleAspSerLeuSerA 1712608 : AGGATTCTTCGTAATATCTTTGGAAACGTATACGAAGGTAATTGACTCTCTGTCTG : 1712664 392 : erIlePheThrIleLeuLysArg : 398 !!:!:.!! ! !! !|||||| laLeuLeuCysArgCysLysArg 1712665 : CGTTGCTTTGTCGTTGTAAACGC : 1712687 vulgar: AmOr76 297 398 . KQ414915.1 1712384 1712687 + 335 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712385 1712687 335 + . gene_id 5 ; sequence AmOr76 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1712385 1712687 . + . KQ414915.1 exonerate:protein2genome:local exon 1712385 1712687 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712385 1712687 335 + . alignment_id 5 ; Query AmOr76 ; Align 1712385 298 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 275 Query range: 297 -> 391 Target range: 1702974 -> 1703256 298 : GlyArgArgValThrPheThrPheHisIleThrGlyCysMetCysGlnLeuLeuMe : 316 !.!||||||:!!||||||..!|||||||||..!||| !!:!:||||||||||||:! AlaArgArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLeuLe 1702975 : GCGAGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATTGCT : 1703029 317 : tPheThrTyrSerCysAspCysLeuIleArgAspSerMetAspIleAlaAspAlaA : 335 :|||||||||||||||||| !!||||||..!!!:|||! !:!!|||!.! !||| uPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaI 1703030 : ATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGA : 1703086 336 : laTyrAsnCysSerTrpSerPheLeuProMetAspLysTyrGlyLysMetIleArg : 353 !||| ! ! !!|||! ! !||||||||||||||| !|||!:!! !:!:||| leTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArg 1703087 : TATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGA : 1703140 354 : ArgAspLeuMetPheValIleThrArgSerArgThrProCysCysLeuThrAlaCy : 372 |||||||||! .!.||||||..!|||||||||! ! !! !!|||||||||||| ! ArgAspLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSe 1703141 : AGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAG : 1703197 373 : sGlyPhePheAlaValSerLeuGluThrTyrThrLysValLeuSerThrAlaIleS : 391 !||||||||| !!|||||||||||||||! !|||! !|||!!!!:! !:!!.!!| rGlyPhePheProValSerLeuGluThrCysThrThrValPheAsnPheSerPheS 1703198 : CGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATTTCTCATTCT : 1703254 392 : er : 391 || er 1703255 : CT : 1703256 vulgar: AmOr76 297 391 . KQ414915.1 1702974 1703256 + 275 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702975 1703256 275 + . gene_id 6 ; sequence AmOr76 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702975 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1702975 1703256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702975 1703256 275 + . alignment_id 6 ; Query AmOr76 ; Align 1702975 298 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 258 Query range: 181 -> 292 Target range: 1702007 -> 1702352 182 : PheValGlnValValPheValTyrHisValCysValCysTyrHisCysPheAspSe : 200 |||!.!||||||:!!! !:!!||||||||| !!||||||||| !|||||||||!: PheAlaGlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAs 1702008 : TTTGCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAA : 1702062 201 : rLeuLeuCysIleLeuAsnLeuHisThrAlaSerGlnPheArgIleLeuGlnHisA : 219 !|||||||||:!::!!|||||||||.!!|||!!!||||||||||||||||||:!!| nLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrA 1702063 : CCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACA : 1702119 220 : rgPheAlaAsnThrCysAsnGluLysArgGlyLysArgAspGluAspGluGluSer : 237 ||!!.:!!||| ! !!:!! !!!.||| !:!! !|||!!::!!|||...||| rgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSer 1702120 : GGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGC : 1702173 238 : AlaLeu<-><->SerPheTyrGlu<-><->TyrSerLysLeuLysAlaTyrIleAr : 252 ||| ! !!||| ||| |||!.! !!!!||| !! !:!!|| AlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValAr 1702174 : GCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACG : 1702230 253 : gGlnHisGlnAlaLeuIleGluTyrCysLysLysLeuGluGlnValPheAsnSerI : 271 |||||||||| !! !||| !|||||| ! !:!|||.!.:!!:!!|||!.. !| gGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValI 1702231 : ACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCA : 1702287 272 : leValPheGlyGlnValLeuLeuPheSerLeuLeuMetCysLeuAspGlyTyrLeu : 289 |||||.!!|||!!.:!!|||:!!||||||||||||!!:||||||! !|||!:!! ! leValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGln 1702288 : TTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAA : 1702341 290 : IleLeuMet : 292 :!:|||:!! ValLeuVal 1702342 : GTGCTCGTG : 1702352 vulgar: AmOr76 181 292 . KQ414915.1 1702007 1702352 + 258 M 58 174 G 0 6 M 4 12 G 0 6 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702008 1702352 258 + . gene_id 7 ; sequence AmOr76 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702008 1702352 . + . KQ414915.1 exonerate:protein2genome:local exon 1702008 1702352 . + . insertions 12 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702008 1702352 258 + . alignment_id 7 ; Query AmOr76 ; Align 1702008 182 174 ; Align 1702188 240 12 ; Align 1702206 244 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 190 Query range: 150 -> 230 Target range: 1681725 -> 1682088 151 : AsnArgGlyLysAsnGluSerAspArgIleLeuProPheAsnMetTrpLeu<->Gl : 168 |||! !||||||!:!!!:..!!!:||||||||||||||| .!. ! :!! .! AsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAs 1681726 : AACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAA : 1681780 169 : uLeuProLeuSerIleThrProTyrPheGluValMetPhePheValGln >>>> : 185 .|||||| !|||:!:|||||||||:::|||::::::||| ! :!!:!! nLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681781 : CTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt..... : 1681833 186 : Target Intron 1 >>>> ValValPheValTyrHisValCysValCysTyrH : 196 120 bp ..!:!!! !||| ||| ! ! :!!|||!:! ++ThrLeuSerValValHisSerGlyIleCysPheC 1681834 : ....................agACATTATCTGTGGTGCATTCGGGAATTTGTTTCT : 1681984 197 : isCysPheAspSerLeuLeuCysIleLeuAsnLeuHisThrAlaSerGlnPheArg : 214 !|||||||||!:!!!!||||||||||||!:!:!!|||..!!.!.!!||||||!:! ysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLys 1681985 : GTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAG : 1682038 215 : IleLeuGlnHisArgPheAlaAsnThrCysAsnGluLysArgGlyLys : 230 |||||||||:!!!:!.!! !!....!! !:!|||||| ...||| IleLeuGlnAsnLysLeuGlnThrValLeuSerGluLysSerSerLys 1682039 : ATTTTACAAAACAAACTCCAAACAGTATTGAGTGAGAAatcttcgaaa : 1682088 vulgar: AmOr76 150 230 . KQ414915.1 1681725 1682088 + 190 M 17 51 G 0 3 M 17 51 5 0 2 I 0 116 3 0 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681726 1682088 190 + . gene_id 8 ; sequence AmOr76 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681726 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681726 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682088 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682088 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681726 1682088 190 + . alignment_id 8 ; Query AmOr76 ; Align 1681726 151 51 ; Align 1681780 168 51 ; Align 1681951 185 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 186 Query range: 65 -> 149 Target range: 1698547 -> 1698799 66 : AspSerIleTyrValAlaCysAsnIleIleThrValSerLeuValLeuIleLysLe : 84 |||!!! !|||..!||||||||||||:!! !:!!! !:!!||||||:!!||||| AspCysAlaTyrThrAlaCysAsnIleLeuCysLeuIleMetValLeuLeuLysLe 1698548 : gACTGTGCTTACACCGCTTGTAACATTCTCTGCCTGATTATGGTACTGTTAAAGCT : 1698602 85 : uLeuThrSerPheIleTyrAsnGluGluLeuLeuGlyIleIleArgTyrAlaLysT : 103 |!!!..! !||||||:!!!..:!!|||!!!:!!! !:!:::: ||| uPheValValPheIleHisArgLysGluPheIleGluLeuLeuValTyrMetTyrL 1698603 : GTTCGTTGTATTCATACACAGGAAAGAATTCATCGAACTgcttgtatatatgtaca : 1698659 104 : hrAsnPheTrpHisSerAsnTyrAspThrCysGluLysSerIleMetAsnLysCys : 121 |||||||||||| !||||||||| ! !||| ! !:!::!!.!. ! ||| ysAsnPheTrpHisLeuAsnTyrAspCysAsnGluLeuLeuLeuLeuGlnAspCys 1698660 : aaaatttttggcACCTCAATTACGATTGCAACGAACTACTACTGCTGCAAGACTGC : 1698713 122 : GlnArgThrCysAsnTyrLeuValPheValPheThrPhePheAlaGlnGlyThrVa : 140 ::!|||! ! !!!.! ! !:!! :!!.!!!.!|||! !||||||||||||:! ArgArgIleSerThrIleCysIleThrLeuIleAsnPheCysAlaGlnGlyThrIl 1698714 : AGAAGAATTAGCACTATATGTATCACGTTGATTAACTTCTGTGCTCAAGGCACAAT : 1698770 141 : lLeuGlyPheIleLeuArgProIleLeu : 149 !:!!.!!!:!:!:|||! !||||||:!! eValSerTyrValLeuThrProIleIle 1698771 : TGTCAGCTACGTGCTAACACCTATTATA : 1698799 vulgar: AmOr76 65 149 . KQ414915.1 1698547 1698799 + 186 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1698548 1698799 186 + . gene_id 9 ; sequence AmOr76 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1698548 1698799 . + . KQ414915.1 exonerate:protein2genome:local exon 1698548 1698799 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1698548 1698799 186 + . alignment_id 9 ; Query AmOr76 ; Align 1698548 66 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 0 -> 67 Target range: 1700446 -> 1700647 1 : MetLysSerLysGluValArgAspLeuSerIleThrValThrAlaPheTyrMetLy : 19 |||! ||||||:!! !||||||:!!|||:!:!:!|||||||||||||||:!!|| MetThrSerLysLysAsnArgAspValSerValSerValThrAlaPheTyrLeuLy 1700447 : ATGACTTCGAAGAAGAACAGGGACGTATCAGTGAGCGTCACAGCTTTCTACTTGAA : 1700501 20 : sIleAlaGlyPheTrpThrSerThrAsnTyrValGluGluArgArgArgAsnValT : 38 |||| !||||||||| !:!! !!.!|||! !|||:!!|||||||||!!. !!. sIleIleGlyPheTrpLeuAlaAspThrTyrGluGluLysArgArgArgLysPheA 1700502 : AATCATCGGCTTCTGGTTAGCTGACACTTACGAGGAGAAACGTCGAAGAAAGTTCG : 1700558 39 : hrMetSerTyrThrLeuPheAlaIleLeuPheAlaAlaThrThrGluAlaArgAsp : 56 !!..!!:!! !|||:!!.!! !:!!:!!! !|||!.! ! !|||!.!|||||| laGlnAsnCysThrIleLeuMetLeuMetCysAlaValLeuLeuGluValArgAsp 1700559 : CGCAGAATTGCACGATACTTATGCTTATGTGCGCTGTGCTGCTTGAGGTGAGGGAT : 1700612 57 : LeuTyrPheSerTrpGlyAsnPheSerAspSer : 67 :!!||| !! !||||||:!!|||.!!! ||| IleTyrHisIleTrpGlyAspPheGlyValSer 1700613 : ATCTATCACATCTGGGGAGATTTCGGCGTAAGT : 1700647 vulgar: AmOr76 0 67 . KQ414915.1 1700446 1700647 + 170 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1700447 1700647 170 + . gene_id 10 ; sequence AmOr76 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1700447 1700647 . + . KQ414915.1 exonerate:protein2genome:local exon 1700447 1700647 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1700447 1700647 170 + . alignment_id 10 ; Query AmOr76 ; Align 1700447 1 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 181 -> 239 Target range: 1711876 -> 1712050 182 : PheValGlnValValPheValTyrHisValCysValCysTyrHisCysPheAspSe : 200 |||!.!||||||:!!! !!.!|||!!.:!! !!||| !!||| !|||||||||!: PheAlaGlnValLeuSerAlaTyrGlnIleGlyValSerTyrGlyCysPheAspAs 1711877 : TTTGCACAGGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGGTTGCTTCGACAA : 1711931 201 : rLeuLeuCysIleLeuAsnLeuHisThrAlaSerGlnPheArgIleLeuGlnHisA : 219 !:!!|||||||||:!!||||||||| !|||!!!|||||||||||||||||||||| nValLeuCysIleMetAsnLeuHisLeuAlaThrGlnPheArgIleLeuGlnHisA 1711932 : CGTTCTATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAATACTGCAACATA : 1711988 220 : rgPheAlaAsnThrCysAsnGluLysArgGlyLysArgAspGluAspGluGluSer : 237 ||.!.!.!|||! ! !..! !|||!!! !:!!! ! ||| ! ! |||!!! rgLeuValAsnIleAsnGlyLeuLysSerLysGlnThrProGluLysGlyGluThr 1711989 : GACTGGTGAATATAAACGGTCTGAAGAGCAAACAGACACCGGAGAAAGGTGAAACG : 1712042 238 : AlaLeu : 239 :!!:!! SerIle 1712043 : TCGATT : 1712050 vulgar: AmOr76 181 239 . KQ414915.1 1711876 1712050 + 146 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711877 1712050 146 + . gene_id 11 ; sequence AmOr76 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1711877 1712050 . + . KQ414915.1 exonerate:protein2genome:local exon 1711877 1712050 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711877 1712050 146 + . alignment_id 11 ; Query AmOr76 ; Align 1711877 182 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 147 -> 185 Target range: 1711228 -> 1711342 148 : IleLeuValAsnArgGlyLysAsnGluSerAspArgIleLeuProPheAsnMetTr : 166 :!!! !||||||! !|||!:!|||||||||||||||||||||||||||!!.||||| ValSerValAsnIleGlyArgAsnGluSerAspArgIleLeuProPheLysMetTr 1711229 : GTTTCAGTGAATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTG : 1711283 167 : pLeuGluLeuProLeuSerIleThrProTyrPheGluValMetPhePheValGlnV : 185 |:!!!!::!!||| !|||!!:|||||||||||||||:::...||| :!!|||| pIleAspIleProThrSerMetThrProTyrPheGluIlePhePheThrLeuGlnV 1711284 : GATTGATATACCGACATCGATGACACcgtattttgaaatattcttcaccTTACAGG : 1711340 186 : al : 185 || al 1711341 : TA : 1711342 vulgar: AmOr76 147 185 . KQ414915.1 1711228 1711342 + 143 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711229 1711342 143 + . gene_id 12 ; sequence AmOr76 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1711229 1711342 . + . KQ414915.1 exonerate:protein2genome:local exon 1711229 1711342 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711229 1711342 143 + . alignment_id 12 ; Query AmOr76 ; Align 1711229 148 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 226 -> 292 Target range: 1712029 -> 1712227 227 : LysArgGlyLysArgAspGluAspGluGluSerAlaLeuSerPheTyrGluTyrSe : 245 :!!!:!|||:!!! !... !!:..!!!!! !!!!:!! ! !!...|||.. GluLysGlyGluThrSerIleIleAspSerThrGluPheAlaAspAsnSerTyrAs 1712030 : GAGAAAGGTGAAACGTCGATTATAGATTCGACAGAATTTGCGGATAACTCTTACGA : 1712084 246 : rLysLeuLysAlaTyrIleArgGlnHisGlnAlaLeuIleGluTyrCysLysLysL : 264 ! !!!||| !! !:!!||||||||||||:!!|||!!:! !:!|||:::|||| pValPheLysArgCysValArgGlnHisGlnSerLeuMetAlaPheCysGluLysL 1712085 : CGTTTTCAAAAGATGCGTTCGTCAACATCAATCTCTGATGGCTTTCTgcgagaaac : 1712141 265 : euGluGlnValPheAsnSerIleValPheGlyGlnValLeuLeuPheSerLeuLeu : 282 |||||::::::|||!:!! !|||:!!.!.||||||:!!|||:!!||||||:!!!!! euGluGluMetPheSerMetIleIleLeuGlyGlnLeuLeuValPheSerIlePhe 1712142 : tcgaagaaatgTTCAGTATGATTATACTGGGGCAATTGTTAGTGTTCAGTATTTTT : 1712195 283 : MetCysLeuAspGlyTyrLeuIleLeuMet : 292 ||||||||||||! !! !! !:!!|||:!! MetCysLeuAspValCysGlnValLeuLeu 1712196 : ATGTGTCTCGACGTGTGCCAAGTACTTCTG : 1712227 vulgar: AmOr76 226 292 . KQ414915.1 1712029 1712227 + 137 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712030 1712227 137 + . gene_id 13 ; sequence AmOr76 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1712030 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1712030 1712227 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712030 1712227 137 + . alignment_id 13 ; Query AmOr76 ; Align 1712030 227 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr89 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 448 Query range: 184 -> 395 Target range: 1707376 -> 1709234 185 : GlnIleMetThrPheTyrPheIleGlyIleSerTyrPheCysPheAspAsnIlePh : 203 |||:!!.!.! ! ! !:!:!! !!|||||||||.!!|||.!!||||||.!!.! GlnValPheIleValMetTyrValCysIleSerTyrLeuCysIleAspAsnPheLe 1707377 : CAGGTTTTTATCGTAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTCT : 1707431 204 : eCysIleMetThrValHisLeuAlaGlyGlnPheGlnIleLeuArgHisArgPheA : 222 .|||!!:!!:!.!:!!||| !||| !||||||!:!||||||!:!:!!|||.!.. uCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1707432 : GTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGT : 1707488 223 : spArgLeuCysAsnAla<-><-><->GluAspArgIleAlaGluLys<->GlyAla : 236 ..!.!:!!|||..!||| ...|||:::|||::::::||| !:!! erAsnValCysGlyAlaAsnGluArgSerAspLysIleSerLysLysThrProSer 1707489 : CGAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCC : 1707542 237 : HisAlaArgGluPheTyrAspArgPheLysAlaArgValProTyrHisGlnAlaLe : 255 :!!:!! !|||! !|||! !!:!|||||| ! !!:!!! ! ! ||||||||||| AsnSerAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLe 1707543 : AATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACT : 1707599 256 : uIleAspTyrCysGluLysIleGluAsnValSerProThrIleIleLeuGluProV : 274 ||||!!:||||||.!.:!!:!!:!!.!.|||! ! ! !.!!:!:|||! !! !| uIleGluTyrCysAsnGluLeuGlnGluValPheGlyLeuPheValLeuAlaGlnV 1707600 : CATAGAATACTGTAACGAACTTCAAGAGGTGTTCGGTTTATTTGTGCTTGCACAAG : 1707656 275 : alMetValPheSerValIleIleCysLeuPheGlyTyrArgIleLeuTrp >>>> : 291 ||:!!:!!||||||:!!:!!!!:|||||| !|||||| !:!::!! alLeuLeuPheSerLeuLeuMetCysLeuAspGlyTyrLeuValMet---++ 1707657 : TGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGGATATTTGGTGATG---gt.... : 1707706 292 : Target Intron 1 >>>> AlaAsnAlaProSerThrArgArgSerIlePhe : 301 457 bp ! !:!!.!!|||! !! !!:!||| !! !||| ++GluAspThrProIleMetGlnArgLeuThrPhe 1707707 : .....................agGAAGATACTCCCATTATGCAGCGCCTTACTTTC : 1708191 302 : IlePheLeuLeuIleGlyAlaMetSerLeuLeuPheMetPheThrPheSerCysAs : 320 :!:|||! !|||! |||..!:!!!!!! !|||!!.|||||||||!:!||||||:! LeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAs 1708192 : TTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGATGTTCACCTACAGCTGCGA : 1708248 321 : nCysValThrGluHisSerGluAsnIleAlaIleGlyAlaTyrSerAlaLeuTrpT : 339 !|||:!!! !..!.!.||| !|||:!:|||! !!.! !|||..!..!! !|||! pCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIleTyrAspCysSerTrpI 1708249 : TTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATATACGACTGCTCGTGGA : 1708305 340 : hrAlaMetProMetAspLysPheGlyLysMetLeuArgAsnAspLeuIleMetVal : 357 ! !:!!|||||||||!:!! !|||::!|||||||||!!.||||||! !.!.||| leHisLeuProMetAspArgSerGlyArgMetLeuArgLysAspLeuThrPheVal 1708306 : TTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGACATTCGTC : 1708359 358 : IleLysArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePheProValSe : 376 ||| !||||||||| ! !||||||||||||||| !||||||||||||||||| IleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePheProValSe 1708360 : ATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTC : 1708416 377 : rLeuGluThrTyrThrThr >>>> Target Intron 2 >>>> IleLeuSe : 385 ||||||||||||||||:!! 759 bp |||||||| rLeuGluThrTyrThrSer++ ++IleLeuSe 1708417 : ACTGGAAACGTACACTTCGgt.........................agATTTTAAG : 1709202 386 : rThrAlaValSerTyrPheThrLeuLeuArg : 395 |||||||!.!||||||||||||||||||||| rThrAlaAlaSerTyrPheThrLeuLeuArg 1709203 : TACCGCAGCGTCATACTTCACACTGCTACGA : 1709234 vulgar: AmOr89 184 395 . KQ414915.1 1707376 1709234 + 448 M 43 129 G 0 9 M 7 21 G 0 3 M 55 165 G 1 0 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707377 1709234 448 + . gene_id 1 ; sequence AmOr89 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1707377 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707377 1707703 . + . insertions 12 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709234 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709234 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1707377 1709234 448 + . alignment_id 1 ; Query AmOr89 ; Align 1707377 185 129 ; Align 1707515 228 21 ; Align 1707539 235 165 ; Align 1708161 291 276 ; Align 1709196 383 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr89 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 345 Query range: 153 -> 395 Target range: 1681731 -> 1683051 154 : AlaSerAsnAsnSerGluArgMetLeuProPheAsnMetTrpLeu<->LysLeuPr : 171 !.!!.!!:!:!!..!||||||!!:||||||||| .!. ! :!! !!.||||| GlyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAsnLeuPr 1681732 : GGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAACTTGCC : 1681786 172 : oLeuSerGluSerProTyrTyrGluLeuMetPheValTyrGln >>>> Target : 186 | !||| !!!!||||||||||||::::::|||||| :!! 1 oThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681787 : TACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt........... : 1681833 187 : Intron 1 >>>> IleMetThrPheTyrPheIleGlyIleSerTyrPheCysP : 199 20 bp ! !:!::!! ! ! ||||||!!!!:!! !|||| ++ThrLeuSerValValHisSerGlyIleCysPheCysCysP 1681834 : ..............agACATTATCTGTGGTGCATTCGGGAATTTGTTTCTGTTGTT : 1681990 200 : heAspAsnIlePheCysIleMetThrValHisLeuAlaGlyGlnPheGlnIleLeu : 217 ||||||||.!!.!.||||||:!!!:!:!!|||:!!!.!|||||||||:!!|||||| heAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLysIleLeu 1681991 : TCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAGATTTTA : 1682044 218 : ArgHisArgPheAspArgLeuCysAsnAlaGluAspArgIleAlaGluLysGlyAl : 236 !:!:!!!:!.!!.!.! !:!!! ::!||| ! ||||||...|| GlnAsnLysLeuGlnThrValLeu---SerGluLysSerSerLysGluLysSerAl 1682045 : CAAAACAAACTCCAAACAGTATTG---AGTGAGAAatcttcgaaagaaaaatcagc : 1682098 237 : aHisAlaArgGluPheTyrAspArgPheLysAlaArgValProTyrHisGlnAlaL : 255 | ! !.!.||| ! ..!||||||! ! !!|||! !||||||!!. !| a---------GlyLeuTyrLysGluPheLysGluCysValGlnTyrHisHisLeuL 1682099 : t---------GGACTGTATAAAGAGTTCAAGGAGTGCGTACAGTATCATCATTTGC : 1682146 256 : euIleAspTyrCysGluLysIleGluAsnValSerProThrIleIleLeuGluPro : 273 ||:!!...||| ||||||:::||| |||! ! !..! :!::!! ! ! euLeuSerTyrValGluLysLeuGluTyrValPheCysValProLeuMetIleGln 1682147 : TTCTTTCGtacgtggaaaaattggaatacgTATTTTGTGTCCCGTTGATGATTCAA : 1682200 274 : ValMetValPheSerValIleIleCysLeuPheGlyTyrArgIleLeuTrp >>> : 291 :!!:!!|||! !|||:!!:!!:!:|||:!!! |||!:!!:!:!!! !! ! LeuLeuValSerSerIleValLeuCysValSerGlyPheGlnLeuSerLeu++ 1682201 : TTGCTGGTGTCTAGCATAGTTCTGTGCGTCTCGGGGTTTCAACTATCATTGgt... : 1682256 292 : > Target Intron 2 >>>> AlaAsnAlaProSerThrArgArgSerIlePh : 301 285 bp !.!|||!.! !! !! !!:!|||! !:!:|| ++ValAsnGlyValLeuMetLysArgLeuLeuPh 1682257 : ......................agGTGAACGGTGTATTGATGAAACGATTGTTGTT : 1682569 302 : eIlePheLeuLeuIleGlyAlaMetSerLeuLeuPheMetPheThrPheSerCysA : 320 |:!! !! !!!!:!!|||!.!:!!! :::|||:::...|||.!.!:!|||| eLeuAsnTyrPheLeuGlyGlyValIleGlnIlePheLeuIleThrLeuAsnCysA 1682570 : CCTAAATTACTTTCTCGGTGGAGTGATacagatatttttaataacccTAAATTGCA : 1682626 321 : snCysValThrGluHisSerGluAsnIleAlaIleGlyAlaTyrSerAlaLeuTrp : 338 || !:!!! !|||!!.|||! !|||!.!! !!.! !||||||..! !||| snAspIleMetGluGlnSerGlyAlaIleGlyThrAlaIleTyrSerCysAsnTrp 1682627 : ACGACATAATGGAGCAAAGTGGCGCTATAGGAACAGCGATCTACAGTTGTAATTGG : 1682680 339 : ThrAlaMetProMetAspLysPheGlyLysMetLeuArgAsnAspLeuIleMetVa : 357 ! !! ::: ||| ..!!!!|||!!.|||:!!!!:!!:|| GluArgAsnValTyrAsnHisPhe---TyrGlnPheArgLysAspMetMetIleVa 1682681 : GAGAGGAAtgtttataatcatttt---taccAGTTCAGAAAGGATATGATGATTGT : 1682734 358 : lIleLysArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePheProValS : 376 |!!: !|||:!!!:!||| !|||! !:!!:!!||| !|||||||||:!!| lMetValArgAlaLysArgProCysTyrIleSerAlaAlaLysPhePheProIleS 1682735 : AATGGTACGAGCGAAACGTCCTTGCTACATTTCAGCAGCGAAATTCTTTCCAATCT : 1682791 377 : erLeuGluThrTyrThrThr >>>> Target Intron 3 >>>> IleLeuS : 385 ||||||||:!!!:!|||! 201 bp :!:|||| erLeuGluSerPheThrLys++ ++ValLeuS 1682792 : CCCTTGAATCGTTCACGAaggt.........................agGTGTTAA : 1683019 386 : erThrAlaValSerTyrPheThrLeuLeuArg : 395 ||.!!.!!!.!||||||!:!|||||||||||| erAlaThrAlaSerTyrTyrThrLeuLeuArg 1683020 : GTGCAACAGCATCTTATTATACACTGCTGCGT : 1683051 vulgar: AmOr89 153 395 . KQ414915.1 1681731 1683051 + 345 M 15 45 G 0 3 M 17 51 5 0 2 I 0 116 3 0 2 M 40 120 G 1 0 M 10 30 G 3 0 M 51 153 5 0 2 I 0 281 3 0 2 M 56 168 G 1 0 M 35 105 5 0 2 I 0 197 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681732 1683051 345 + . gene_id 2 ; sequence AmOr89 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681732 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681732 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682253 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682253 . + . insertions 0 ; deletions 4 KQ414915.1 exonerate:protein2genome:local splice5 1682254 1682255 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1682254 1682538 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1682537 1682538 . + . intron_id 1 ; splice_site "aG" KQ414915.1 exonerate:protein2genome:local cds 1682539 1682811 . + . KQ414915.1 exonerate:protein2genome:local exon 1682539 1682811 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1682812 1682813 . + . intron_id 3 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1682812 1683012 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1683011 1683012 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1683013 1683051 . + . KQ414915.1 exonerate:protein2genome:local exon 1683013 1683051 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681732 1683051 345 + . alignment_id 2 ; Query AmOr89 ; Align 1681732 154 45 ; Align 1681780 169 51 ; Align 1681951 186 120 ; Align 1682071 227 30 ; Align 1682101 240 153 ; Align 1682539 291 168 ; Align 1682707 348 105 ; Align 1683013 383 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr89 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 286 Query range: 289 -> 397 Target range: 1702956 -> 1703653 290 : TrpAlaAsnAlaProSerThrArgArgSerIlePheIlePheLeuLeuIleGlyAl : 308 |||.!! !!.! !! !!.!!|||||| !! !|||:!!|||! !:!!:!!|||:: TrpThrProValThrProAlaArgArgLeuThrPheValPheHisIleValGlySe 1702957 : TGGACACCTGTGACTCCAGCGAGGCGGCTTACTTTCGTATTTCACATAGTCGGTAG : 1703011 309 : aMetSerLeuLeuPheMetPheThrPheSerCysAsnCysValThrGluHisSerG : 327 !:!:!!!! !|||!!.:!:||||||!:!||||||:!! !!:!!! !|||.!.||| rLeuCysGlnLeuLeuLeuPheThrTyrSerCysAspGlyLeuIleGluGluSerT 1703012 : TCTATGCCAACTATTGCTATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTA : 1703068 328 : luAsnIleAlaIleGlyAlaTyrSerAlaLeuTrpThrAlaMetProMetAspLys : 345 !||||||!.!! !!.! !||| !!.!! !|||! ! !:!!|||||||||||| hrAsnIleGlyThrAlaIleTyrLeuGlyProTrpIleHisLeuProMetAspLys 1703069 : CGAACATCGGGACTGCGATATACCTCGGGCCTTGGATACATCTGCCAATGGACAAA : 1703122 346 : PheGlyLysMetLeuArgAsnAspLeuIleMetValIleLysArgSerArgArgVa : 364 !|||!:!! !||||||!..||||||! !||||||||| !|||||||||!:! AlaGlyArgArgLeuArgArgAspLeuThrMetValIleValArgSerArgLysSe 1703123 : GCCGGCAGAAGGTTGAGAAGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATC : 1703179 365 : lCysCysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrThr : 383 ! !!||||||||||||!:!|||||||||||||||||||||||||||! !|||||| rSerCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrCysThrThr+ 1703180 : GAGCTGTTTAACTGCCAGCGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGg : 1703236 384 : >>>> Target Intron 1 >>>> IleLeuSerThrAlaValSerTyrPheT : 392 373 bp :!:||||||||||||:!!|||||||||| + ++ValLeuSerThrAlaMetSerTyrPheT 1703237 : t.........................agGTGCTCAGTACAGCGATGTCATACTTCA : 1703636 393 : hrLeuLeuArgAsnAsn : 397 |||||||||||:!!::! hrLeuLeuArgHisSer 1703637 : CTTTATTAAGGCACTCT : 1703653 vulgar: AmOr89 289 397 . KQ414915.1 1702956 1703653 + 286 M 93 279 5 0 2 I 0 369 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702957 1703653 286 + . gene_id 3 ; sequence AmOr89 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702957 1703235 . + . KQ414915.1 exonerate:protein2genome:local exon 1702957 1703235 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1703236 1703237 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1703236 1703608 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1703607 1703608 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1703609 1703653 . + . KQ414915.1 exonerate:protein2genome:local exon 1703609 1703653 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702957 1703653 286 + . alignment_id 3 ; Query AmOr89 ; Align 1702957 290 279 ; Align 1703609 383 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr89 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 273 Query range: 290 -> 397 Target range: 1695617 -> 1696257 291 : AlaAsnAlaProSerThrArgArgSerIlePheIlePheLeuLeuIleGlyAlaMe : 309 .!!:!!:!!||| !!:!!|||!.! ! !!!.:!!.!! !||| !|||.!!:! ThrAspSerProProSerArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrLe 1695618 : ACAGACTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTTT : 1695672 310 : tSerLeuLeuPheMetPheThrPheSerCysAsnCysValThrGluHisSerGluA : 328 !!!!! !|||||||||||||||!:!||||||:!! !!:!!|||..!.!.||| !: uCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGluSerMetA 1695673 : GTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATGG : 1695729 329 : snIleAlaIleGlyAlaTyrSerAlaLeuTrpThrAlaMetProMetAspLysPhe : 346 !!:!!::!! !!.!!.!!:!:!! !! !|||.!! !:!!|||||||||!:! ! spValSerArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAspArgAsn 1695730 : ACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAAT : 1695783 347 : GlyLysMetLeuArgAsnAspLeuIleMetValIleLysArgSerArgArgValCy : 365 ||||||! :!!|||.!...!:!!:!!|||||||||! !||||||!.!||| !|| GlyLysSerValArgGlnSerMetLeuMetValIleMetArgSerAsnArgCysCy 1695784 : GGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTTG : 1695840 366 : sCysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrThr >> : 383 |||||||||||||!:!||||||||||||||||||||||||||||||||| ! sCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrGly++ 1695841 : CTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGgt.. : 1695896 384 : >> Target Intron 1 >>>> IleLeuSerThrAlaValSerTyrPheThrL : 393 319 bp :!!||||||||||||:!!||||||||||||| ++ValLeuSerThrAlaMetSerTyrPheThrL 1695897 : .......................agGTCCTCAGCACTGCAATGTCATACTTTACAC : 1696243 394 : euLeuArgAsnAsn : 397 ||||||||.!.::: euLeuArgGlnSer 1696244 : TACTGAGACAATCG : 1696257 vulgar: AmOr89 290 397 . KQ414915.1 1695617 1696257 + 273 M 92 276 5 0 2 I 0 315 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1695618 1696257 273 + . gene_id 4 ; sequence AmOr89 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696257 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696257 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1695618 1696257 273 + . alignment_id 4 ; Query AmOr89 ; Align 1695618 291 276 ; Align 1696213 383 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr89 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 237 Query range: 296 -> 386 Target range: 1712387 -> 1712657 297 : ArgArgSerIlePheIlePheLeuLeuIleGlyAlaMetSerLeuLeuPheMetPh : 315 !:!!:!! |||||| ||| ||| |||..!|||!!!! !|||.!.||||| LysGlnMetIlePheThrPheHisLeuAlaGlyCysMetCysGlnLeuLeuMetPh 1712388 : AAACAGAtgattttcacgtttcacctAGCGGGATGTATGTGTCAATTGCTGATGTT : 1712442 316 : eThrPheSerCysAsnCysValThrGluHisSerGluAsnIleAlaIleGlyAlaT : 334 ||||!:!||||||:!!|||:!!! ! !.!.||| !|||:!:.!! !!.!!.!| eThrTyrSerCysAspCysIleIleThrGluSerLeuAsnValThrGluAlaValT 1712443 : TACGTACAGCTGCGATTGTATAATAACGGAAAGTTTGAACGTGACGGAAGCGGTGT : 1712499 335 : yrSerAlaLeuTrpThrAlaMetProMetAspLysPheGlyLysMetLeuArgAsn : 352 ||..!!.!! !||| !! !:!!||||||..!! ! |||!:!|||:!!|||!!. yrAspGlyProTrpProArgLeuProMetSerThrArgGlyArgMetIleArgLys 1712500 : ACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGAAGAATGATAAGGAAG : 1712553 353 : AspLeuIleMetValIleLysArgSerArgArgValCysCysLeuThrAlaAsnGl : 371 |||||||||:!:||||||! !||||||||| ! !|||||||||||||||!..|| AspLeuIleLeuValIleIleArgSerArgValProCysCysLeuThrAlaArgGl 1712554 : GATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTGCTTGACCGCCAGAGG : 1712610 372 : yPhePheProValSerLeuGluThrTyrThrThrIleLeuSerThr : 386 ||||||| !:!!||||||||||||||||||! !:!!:!!..!:!! yPhePheValIleSerLeuGluThrTyrThrLysValIleAspSer 1712611 : ATTCTTCGTAATATCTTTGGAAACGTATACGAAGGTAATTGACTCT : 1712657 vulgar: AmOr89 296 386 . KQ414915.1 1712387 1712657 + 237 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712388 1712657 237 + . gene_id 5 ; sequence AmOr89 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1712388 1712657 . + . KQ414915.1 exonerate:protein2genome:local exon 1712388 1712657 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712388 1712657 237 + . alignment_id 5 ; Query AmOr89 ; Align 1712388 297 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr89 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 235 Query range: 288 -> 383 Target range: 1689462 -> 1689747 289 : LeuTrpAlaAsnAlaProSerThrArgArgSerIlePheIlePheLeuLeuIleGl : 307 :!! !|||!!.!.!|||!!!|||! !||| !||||||:!!|||! !:!!||||| IleGlnAlaLysValProThrThrThrArgLeuIlePheLeuPheHisMetIleGl 1689463 : ATACAGGCAAAGGTACCTACCACGACGCGCCTCATATTCTTATTCCACATGATCGG : 1689517 308 : yAlaMetSerLeuLeuPheMetPheThrPheSerCysAsnCysValThrGluHisS : 326 |::!.!.! !! :::......||||||::!||||||..! !!:!!! !|||.!.| ySerPheIleHisIleIlePhePheThrTyrSerCysGlyGlyLeuIleGluGluS 1689518 : TAGCTTCATCCacataattttcttcacgtACAGTTGTGGTGGTTTGATAGAAGAGA : 1689574 327 : erGluAsnIleAlaIleGlyAlaTyrSerAlaLeuTrpThrAlaMetProMetAsp : 344 || !:!!||||||! !!.!.!!|||:!!!.!:!!||||||!.!:!!||||||:!! erMetAspIleAlaThrAlaThrTyrAlaGlyMetTrpThrValLeuProMetAsn 1689575 : GTATGGATATTGCAACAGCAACGTATGCAGGAATGTGGACGGTTTTGCCAATGAAT : 1689628 345 : LysPheGlyLysMetLeuArgAsnAspLeuIleMetValIleLysArgSerArgAr : 363 ||| !!|||||||||:!!|||...:!!:!!! :!::!!! ! !|||||| !!: LysValGlyLysMetIleArgGlyAsnMetLysLeuMetThrValArgSerLeuGl 1689629 : AAAGTTGGCAAAATGATACGAGGAAATATGAAGTTAATGACCGTAAGGTCGTTGCA : 1689685 364 : gValCysCysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrT : 382 ! !||||||:!!||||||..!|||||||||||||||||||||:!!||| !|||. nProCysCysIleThrAlaGlyGlyPhePheProValSerLeuLysThrAlaThrA 1689686 : ACCGTGTTGCATAACTGCTGGTGGATTCTTTCCTGTCTCCTTGAAAACTGCTACCG : 1689742 383 : hrIle : 383 !!:!! laVal 1689743 : CGGTA : 1689747 vulgar: AmOr89 288 383 . KQ414915.1 1689462 1689747 + 235 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1689463 1689747 235 + . gene_id 6 ; sequence AmOr89 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1689463 1689747 . + . KQ414915.1 exonerate:protein2genome:local exon 1689463 1689747 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1689463 1689747 235 + . alignment_id 6 ; Query AmOr89 ; Align 1689463 289 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr89 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 153 -> 186 Target range: 1688062 -> 1688161 154 : AlaSerAsnAsnSerGluArgMetLeuProPheAsnMetTrpLeuLysLeuProLe : 172 ::! !!|||!!.|||!!:|||:!:|||||||||!!.||||||:!! ! ! !||||| SerArgAsnLysSerAspArgValLeuProPheLysMetTrpValAspTrpProLe 1688063 : AGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTGGGTCGATTGGCCGCT : 1688117 173 : uSerGluSerProTyrTyrGluLeuMetPheValTyrGlnIle : 186 ||||!!:!!!|||||||||||||||||||||..!!:!|||:!! uSerAspThrProTyrTyrGluLeuMetPheThrPheGlnVal 1688118 : ATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAGGTA : 1688161 vulgar: AmOr89 153 186 . KQ414915.1 1688062 1688161 + 119 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688063 1688161 119 + . gene_id 7 ; sequence AmOr89 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1688063 1688161 . + . KQ414915.1 exonerate:protein2genome:local exon 1688063 1688161 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688063 1688161 119 + . alignment_id 7 ; Query AmOr89 ; Align 1688063 154 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr89 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 148 -> 186 Target range: 1694346 -> 1694460 149 : LeuIleValGlnThrAlaSerAsnAsnSerGluArgMetLeuProPheAsnMetTr : 167 !!!:!!!.!.!...!!.!!.!|||.!.||||||||||||||||||||||||||||| PheLeuAlaAsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTr 1694347 : TTTTTAGCAAATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTG : 1694401 168 : pLeuLysLeuProLeuSerGluSerProTyrTyrGluLeuMetPheValTyrGlnI : 186 |:!! ! !!!||| !.!! !|||||||||||||||:!!:!:|||:!! |||: pValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGlnV 1694402 : GGTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGG : 1694458 187 : le : 186 !! al 1694459 : TA : 1694460 vulgar: AmOr89 148 186 . KQ414915.1 1694346 1694460 + 118 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694347 1694460 118 + . gene_id 8 ; sequence AmOr89 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1694347 1694460 . + . KQ414915.1 exonerate:protein2genome:local exon 1694347 1694460 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694347 1694460 118 + . alignment_id 8 ; Query AmOr89 ; Align 1694347 149 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr89 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 148 -> 186 Target range: 1699025 -> 1699139 149 : LeuIleValGlnThrAlaSerAsnAsnSerGluArgMetLeuProPheAsnMetTr : 167 :!!:!!...... ... |||!:!|||!!:|||:!!||||||||||||||||| IleLeuAlaAsnIleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTr 1699026 : ATTTTAgcaaatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTG : 1699080 168 : pLeuLysLeuProLeuSerGluSerProTyrTyrGluLeuMetPheValTyrGlnI : 186 |:!! ! ||||||||||||! !|||||| ||||||:!!:!!|||||| !|||: pValAspLeuProLeuSerValSerProThrTyrGluIleValPheValLeuGlnV 1699081 : GGTTGATTTGCCGCTGTCTGTGTCACCAACGTACGAAATAGTGTTCGTGCTTCAGG : 1699137 187 : le : 186 !! al 1699138 : TA : 1699139 vulgar: AmOr89 148 186 . KQ414915.1 1699025 1699139 + 118 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699026 1699139 118 + . gene_id 9 ; sequence AmOr89 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1699026 1699139 . + . KQ414915.1 exonerate:protein2genome:local exon 1699026 1699139 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699026 1699139 118 + . alignment_id 9 ; Query AmOr89 ; Align 1699026 149 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 1050 Query range: 0 -> 389 Target range: 1704894 -> 1708442 1 : MetAsnGlyArgAsnValArgAsnLeuSerIleThrValThrAlaPheTyrMetLy : 19 |||!.!..!!:!!!. !|||:!!:!!|||:!:!:!|||||||||||||||:!!|| MetThrSerLysLysAsnArgAspValSerValSerValThrAlaPheTyrLeuLy 1704895 : ATGACTTCGAAGAAGAACAGGGACGTATCAGTGAGCGTCACAGCTTTCTACTTGAA : 1704949 20 : sValAlaGlyPheTrpValAlaAsnAsnTyrAlaGluLysArgArgArgAsnValA : 38 |:!! !|||||||||:!!|||:!!!.!|||! !|||||||||||||||!!. !!| sIleIleGlyPheTrpLeuAlaAspThrTyrGluGluLysArgArgArgLysPheA 1704950 : AATCATCGGCTTCTGGTTAGCTGACACTTACGAGGAGAAACGTCGAAGAAAGTTCG : 1705006 39 : laMetPheValThrIlePhePheAlaPheMetGlyIleSerIleGluGlyArgAsp : 56 ||..! ! !||||||.!!.!. !.!. !.!:!: !:!!|||! !|||||| laGlnAsnCysThrIleLeuMetLeuMetCysAlaValLeuLeuGluValArgAsp 1705007 : CGCAGAATTGCACGATACTTATGCTTATGTGCGCTGTGCTGCTTGAGGTGAGGGAT : 1705060 57 : LeuTyrPheAlaTrpGlyAspPheGlu >>>> Target Intron 1 >>>> : 66 :!!||| ! !||||||||||||! 1391 bp IleTyrHisIleTrpGlyAspPheGly++ ++ 1705061 : ATCTATCACATCTGGGGAGATTTCGGCgt.........................ag : 1706479 67 : AspSerIlePheAlaGlyCysAsnValIleThrIleValLeuValLeuLeuLysIl : 84 ! ! !:!!!:!!.! !||||||:!!:!!|||:!:! !:!! !|||!!!||||| AlaValValTyrValMetCysAsnIleLeuThrValGlyIleSerLeuPheLysIl 1706480 : GCCGTTGTTTACGTAATGTGCAACATTCTAACAGTGGGCATAAGTTTGTTCAAGAT : 1706535 85 : ePheValLeuTyrIleAsnAsnGluGluLeuLeuAsnValValAsnTyrAlaLysT : 103 |!!.|||! ! ! :::...|||:::...|||...::::::...||||||!:!| eLeuValSerMetArgSerLysGluLysPheLeuGluLeuIleLysTyrAlaArgT 1706536 : CTTGGTCTCGATGAGGagtaaggaaaaatttttggaattaattaaatacgcCAGAA : 1706592 104 : hrAsnPheTrpArgGluSerAsnTyrGluProHisGluLysLysIleIleAspAsp : 121 ||||||||||| .!.|||:!!|||!!: !!!!.|||:!!! !|||:!::!!!!: hrAsnPheTrp---HisSerAspTyrAspSerGlnGluGlnMetIleValAsnGlu 1706593 : CGAATTTCTGG---CACTCGGATTATGACTCGCAGGAGCAAATGATTGTGAACGAG : 1706643 122 : TyrArgArgLeuCysSerPheLeuValCysSerPheThrPhePheAlaGlnGlyTh : 140 ! !!:!|||! !|||!!!||||||:!!||| !|||!.!|||||||||.!.||||| CysLysArgSerCysThrPheLeuIleCysValPheAsnPhePheAlaAsnGlyTh 1706644 : TGTAAACGTTCTTGTACATTCCTCATATGCGTGTTTAATTTCTTCGCTAATGGGAC : 1706700 141 : rValValCysPheValIleThrProValPhe{V} >>>> Target Intron 2 : 151 |||| ! ! !:!:!!|||! !|||:!! ! {!} 266 bp rValSerGlyTyrIleIleArgProIleVal{G}++ 1706701 : AGTGTCTGGATACATAATCAGGCCAATTGTA{G}gt.................... : 1706736 152 : >>>> {al}AsnAsnGlyLysAsnGluSerAspArgIleHisProPheAsnMet : 166 { !}!:: ||||||||||||||||||||||||! ! ! !!|||.!. ++{lu}SerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPhe 1706737 : .....ag{AA}AgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTC : 1707044 167 : TrpPheAspArgSerLeuSerLeuSerProTyrTyrGluIleIleTyrThrIleGl : 185 |||.!!||| ! !! !!!!:!!!!!|||||||||||||||:!!!:!||| || TrpIleAspPheProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGl 1707045 : TGGATTGACTTTCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCA : 1707101 186 : n >>>> Target Intron 3 >>>> ValLeuSerAlaTyrGluIleGlyIl : 194 | 276 bp |||!!!! !!.! ! :!! !!|| n++ ++ValPheIleValMetTyrValCysIl 1707102 : Ggt.........................agGTTTTTATCGTAATGTACGTTTGCAT : 1707404 195 : eCysTyrHisCysPheAspAsnLeuLeuPheValIleAsnLeuTyrThrAlaGlyG : 213 | !!|||! !|||.!!||||||!!!|||! !:!!|||||||||:!!|||||| !| eSerTyrLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrG 1707405 : AAGCTACCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTC : 1707461 214 : lnPheArgIleLeuArgTyrArgPheGluAsnIleCysGlyLysAsnAspAspLys : 231 ||||||||||||||!:!||||||.!...!|||:!:|||||| !|||!!: !!.. lnPheArgIleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSer 1707462 : AATTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgc : 1707515 232 : AsnTyrTyrLysValSerLysSerSerLysTyrCysIleAsnGluTyrLysSerPh : 250 ::: ... ...|||::: !!... !!! !.!. ||| !.!|| AspLysIleSer---LysLysThrProSerAsnSerAspGluCysTyrAlaLysPh 1707516 : gataaaatttcg---aaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTT : 1707569 251 : eLysThrCysValGlnGlnHisGlnAlaLeuIleGluTyrCysLysLysLeuGluA : 269 ||||!.!|||:!!||||||||||||||||||||||||||||||!!.:!!|||:!!! eLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnG 1707570 : CAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAG : 1707626 270 : spValPheSerIleIleValLeuAlaGlnValLeuLeuPheSerLeuLeuIleCys : 287 !:||||||.!!:!!.!!|||||||||||||||||||||||||||||||||!!:||| luValPheGlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCys 1707627 : AGGTGTTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGC : 1707680 288 : LeuAspGlyTyrLeuValLeuMet >>>> Target Intron 4 >>>> Glu : 296 |||||||||||||||||| ||| 457 bp ||| LeuAspGlyTyrLeuVal---Met++ ++Glu 1707681 : CTCGATGGATATTTGGTG---ATGgt.........................agGAA : 1708161 297 : AspThrSerArgAlaLysArgValIlePheThrPheHisLeuMetGlyCysMetCy : 315 |||||| !!! ! !:!!|||:!!! !||| !|||||||||! !||||||:!!|| AspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCy 1708162 : GATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTG : 1708218 316 : sGlnLeuLeuMetPheThrTyrSerCysAspCysLeuMetHisAspSerMetSerV : 334 |||||||||||||||||||||||||||||||||||||!!:!..!!:|||:!!!:!| sGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnV 1708219 : CCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACG : 1708275 335 : alAlaAsnAlaAlaTyrAsnSerLeuTrpProCysLeuProMetAspLysTyrGly : 352 ||||||||||| !|||:!!!!!! !||| ! !||||||||||||!:!! !||| alAlaAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGly 1708276 : TGGCCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGG : 1708329 353 : LysSerLeuArgLysAspLeuThrPheValIleMetArgSerArgSerProCysCy : 371 ::!! !||||||||||||||||||||||||||| ||||||||| !|||||||| ArgMetLeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCy 1708330 : CGAATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTG : 1708386 372 : sLeuThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrGlyIleLeu : 389 ||||||||||||||||||||||||||||||||||||||||||||||..!:!!:!! sLeuThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSerValIle 1708387 : TCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGGTAATT : 1708442 vulgar: AmOr88 0 389 . KQ414915.1 1704894 1708442 + 1050 M 65 195 5 0 2 I 0 1387 3 0 2 M 41 123 G 1 0 M 43 129 S 0 1 5 0 2 I 0 262 3 0 2 S 1 2 M 34 102 5 0 2 I 0 272 3 0 2 M 50 150 G 1 0 M 57 171 G 1 0 M 1 3 5 0 2 I 0 453 3 0 2 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1704895 1708442 1050 + . gene_id 1 ; sequence AmOr88 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1704895 1705089 . + . KQ414915.1 exonerate:protein2genome:local exon 1704895 1705089 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1705090 1705091 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1705090 1706480 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1706479 1706480 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1706481 1706733 . + . KQ414915.1 exonerate:protein2genome:local exon 1706481 1706733 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1706734 1706735 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1706734 1706999 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1706998 1706999 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707000 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707000 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708442 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708442 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1704895 1708442 1050 + . alignment_id 1 ; Query AmOr88 ; Align 1704895 1 195 ; Align 1706481 66 123 ; Align 1706604 108 129 ; Align 1707002 152 102 ; Align 1707380 186 150 ; Align 1707530 237 171 ; Align 1707701 295 3 ; Align 1708161 296 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 624 Query range: 149 -> 396 Target range: 1694349 -> 1695920 150 : PheValAsnAsnGlyLysAsnGluSerAspArgIleHisProPheAsnMetTrpPh : 168 !!.!.!||| !|||||||||:!!|||!!:|||!!: ||||||||||||||| ! LeuAlaAsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTrpVa 1694350 : TTAGCAAATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTGGGT : 1694404 169 : eAspArgSerLeuSerLeuSerProTyrTyrGluIleIleTyrThrIleGln >> : 186 !||| ! !! !.!!||||||||||||||||||:!!:!!!:!! !|||||| lAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGln++ 1694405 : TGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGgt.. : 1694460 187 : >> Target Intron 1 >>>> ValLeuSerAlaTyrGluIleGlyIleCysT : 196 409 bp ..!|||!!!!.!|||.!.:!!|||||||||| ++ThrLeuCysValTyrHisValGlyIleCysT 1694461 : .......................agACACTTTGCGTGTACCATGTCGGTATATGTT : 1694897 197 : yrHisCysPheAspAsnLeuLeuPheValIleAsnLeuTyrThrAlaGlyGlnPhe : 214 || ||||||||||||:!!||| !:!!:!:||||||:!!..!||| !|||||| yrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGlnPhe 1694898 : ACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAATTT : 1694951 215 : ArgIleLeuArgTyrArgPheGluAsnIleCysGlyLysAsnAspAspLysAsnTy : 233 |||||||||!:!||||||||| !|||:!: !!..! !! !!!: ! :!!!.. ! ArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLysGlnThrAs 1694952 : CGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAACAGA : 1695008 234 : rTyrLysValSerLys<-><->SerSerLysTyrCysIleAsnGluTyrLysSerP : 250 ! !::: ::: ! !!!!!!.!:! :!!:!!...||| !..!! pGlyArgGluLeuGluIleGlyTyrThrAsnPheThrValAspSerTyrLeuGlnL 1695009 : CGGTcgagaattggaaattggtTACACAAATTTCACAGTCGATAGTTACTTACAAT : 1695065 251 : heLysThrCysValGlnGlnHisGlnAlaLeuIleGluTyrCysLysLysLeuGlu : 268 !.|||!:!||||||||| ! ||||||||||||! !! |||||||||||||||||| euLysSerCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeuGlu 1695066 : TGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTGGAG : 1695119 269 : AspValPheSerIleIleValLeuAlaGlnValLeuLeuPheSerLeuLeuIleCy : 287 :!!:!!||||||:!::!!||||||!.!|||||||||!!!.!.:!!:!!:!!:!!|| AsnIlePheSerLeuLeuValLeuGlyGlnValLeuPheLeuAlaMetValLeuCy 1695120 : AACATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTACTTTG : 1695176 288 : sLeuAspGlyTyrLeuValLeuMet >>>> Target Intron 2 >>>> Gl : 296 ||||! ||||||! !:!!!!!:!! 415 bp sLeuValGlyTyrGlnLeuPheLeu++ ++Th 1695177 : CCTCGTGGGATATCAGCTATTTCTGgt.........................agAC : 1695618 297 : uAspThrSerArgAlaLysArgValIlePheThrPheHisLeuMetGlyCysMetC : 315 !|||:!! !!! !:!!!:!!.!||| !!!...!.!!:!!||| ||| !:!!| rAspSerProProSerArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrLeuC 1695619 : AGACTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTTTGT : 1695675 316 : ysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuMetHisAspSerMetSer : 333 ||||||||!!!||||||||||||||||||||| !!|||! ...!!:||||||..! ysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGluSerMetAsp 1695676 : GTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATGGAC : 1695729 334 : ValAlaAsnAlaAlaTyrAsnSerLeuTrpProCysLeuProMetAspLysTyrGl : 352 |||::!!..|||!.!!:! !!!! !||| !! !||||||||||||!:! !!|| ValSerArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAspArgAsnGl 1695730 : GTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAATGG : 1695786 353 : yLysSerLeuArgLysAspLeuThrPheValIleMetArgSerArgSerProCysC : 371 |||||||:!!|||:!!..!:!! !.!.|||||||||||||||!.!!!! !|||| yLysSerValArgGlnSerMetLeuMetValIleMetArgSerAsnArgCysCysC 1695787 : GAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTTGCT : 1695843 372 : ysLeuThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrGlyIleLeu : 389 ||||||||||| !!||||||||||||||||||||||||||||||||||||:!!:!! ysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrGlyValIle 1695844 : GCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGGTAATT : 1695897 390 : SerValAlaValSerTrpPhe : 396 !:! !! !..!||| ||| Asn***AspThrSerIlePhe 1695898 : AATTAAGATACGTCCATTTTT : 1695920 vulgar: AmOr88 149 396 . KQ414915.1 1694349 1695920 + 624 M 36 108 5 0 2 I 0 405 3 0 2 M 53 159 G 0 6 M 57 171 5 0 2 I 0 411 3 0 2 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694350 1695920 624 + . gene_id 2 ; sequence AmOr88 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694350 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694350 1694457 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695920 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695920 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694350 1695920 624 + . alignment_id 2 ; Query AmOr88 ; Align 1694350 150 108 ; Align 1694867 186 159 ; Align 1695032 239 171 ; Align 1695618 296 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 529 Query range: 184 -> 389 Target range: 1711882 -> 1712651 185 : GlnValLeuSerAlaTyrGluIleGlyIleCysTyrHisCysPheAspAsnLeuLe : 203 ||||||||||||||||||:!!||||||:!: !!||| !||||||||||||:!!|| GlnValLeuSerAlaTyrGlnIleGlyValSerTyrGlyCysPheAspAsnValLe 1711883 : CAGGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGGTTGCTTCGACAACGTTCT : 1711937 204 : uPheValIleAsnLeuTyrThrAlaGlyGlnPheArgIleLeuArgTyrArgPheG : 222 |! !:!!!!:||||||:!! !||| !|||||||||||||||!:!:!!|||.!.! uCysIleMetAsnLeuHisLeuAlaThrGlnPheArgIleLeuGlnHisArgLeuV 1711938 : ATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAATACTGCAACATAGACTGG : 1711994 223 : luAsnIleCysGly<-><-><-><->LysAsnAspAspLysAsnTyrTyrLysVal : 236 !|||||| !||| :!!!.. !!:|||..! ! ..!:!! alAsnIleAsnGlyLeuLysSerLysGlnThrProGluLysGlyGluThrSerIle 1711995 : TGAATATAAACGGTCTGAAGAGCAAACAGACACCGGAGAAAGGTGAAACGTCGATT : 1712048 237 : SerLysSerSerLysTyrCysIleAsnGluTyrLysSerPheLysThrCysValGl : 255 ! ! ! |||!!!:!!!:!... !|||...||| ! !||||||! !||||||!: IleAspSerThrGluPheAlaAspAsnSerTyrAspValPheLysArgCysValAr 1712049 : ATAGATTCGACAGAATTTGCGGATAACTCTTACGACGTTTTCAAAAGATGCGTTCG : 1712105 256 : nGlnHisGlnAlaLeuIleGluTyrCysLysLysLeuGluAspValPheSerIleI : 274 :|||||||||:!!|||!!:! !:!|||:::|||||||||::::::||||||!!:| gGlnHisGlnSerLeuMetAlaPheCysGluLysLeuGluGluMetPheSerMetI 1712106 : TCAACATCAATCTCTGATGGCTTTCTgcgagaaactcgaagaaatgTTCAGTATGA : 1712162 275 : leValLeuAlaGlnValLeuLeuPheSerLeuLeuIleCysLeuAspGlyTyrLeu : 292 ||:!!|||!.!|||:!!|||:!!||||||:!!!!!!!:|||||||||! !! !! ! leIleLeuGlyGlnLeuLeuValPheSerIlePheMetCysLeuAspValCysGln 1712163 : TTATACTGGGGCAATTGTTAGTGTTCAGTATTTTTATGTGTCTCGACGTGTGCCAA : 1712216 293 : ValLeuMetGluAspThr{S} >>>> Target Intron 1 >>>> {er}Ar : 300 ||||||:!!! ..!:!!{!} 142 bp {!!} ValLeuLeuValSerSer{T}-+ +-{hr}Va 1712217 : GTACTTCTGGTTAGTTCA{A}tt.........................at{CT}GT : 1712382 301 : gAlaLysArgValIlePheThrPheHisLeuMetGlyCysMetCysGlnLeuLeuM : 319 !!.!|||!:!:::|||||||||||||||||| !|||||||||||||||||||||| lGlyLysGlnMetIlePheThrPheHisLeuAlaGlyCysMetCysGlnLeuLeuM 1712383 : GGGTAAACAGAtgattttcacgtttcacctAGCGGGATGTATGTGTCAATTGCTGA : 1712439 320 : etPheThrTyrSerCysAspCysLeuMetHisAspSerMetSerValAlaAsnAla : 337 |||||||||||||||||||||||:!!!!: !!:|||:!!!:!|||.!!.!.||| etPheThrTyrSerCysAspCysIleIleThrGluSerLeuAsnValThrGluAla 1712440 : TGTTTACGTACAGCTGCGATTGTATAATAACGGAAAGTTTGAACGTGACGGAAGCG : 1712493 338 : AlaTyrAsnSerLeuTrpProCysLeuProMetAspLysTyrGlyLysSerLeuAr : 356 !.!|||:!!.!!! !|||||| !!|||||||||..!! ! |||!:!! !:!!|| ValTyrAspGlyProTrpProArgLeuProMetSerThrArgGlyArgMetIleAr 1712494 : GTGTACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGAAGAATGATAAG : 1712550 357 : gLysAspLeuThrPheValIleMetArgSerArgSerProCysCysLeuThrAlaC : 375 ||||||||||! !.!!||||||!!:||||||||| !|||||||||||||||||| gLysAspLeuIleLeuValIleIleArgSerArgValProCysCysLeuThrAlaA 1712551 : GAAGGATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTGCTTGACCGCCA : 1712607 376 : ysGlyPhePheProValSerLeuGluThrTyrThrGlyIleLeu : 389 ! ||||||||| !:!!|||||||||||||||||| !:!!:!! rgGlyPhePheValIleSerLeuGluThrTyrThrLysValIle 1712608 : GAGGATTCTTCGTAATATCTTTGGAAACGTATACGAAGGTAATT : 1712651 vulgar: AmOr88 184 389 . KQ414915.1 1711882 1712651 + 529 M 42 126 G 0 12 M 72 216 S 0 1 5 0 2 I 0 138 3 0 2 S 1 2 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711883 1712651 529 + . gene_id 3 ; sequence AmOr88 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1711883 1712237 . + . KQ414915.1 exonerate:protein2genome:local exon 1711883 1712237 . + . insertions 12 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712238 1712239 . + . intron_id 1 ; splice_site "TT" KQ414915.1 exonerate:protein2genome:local intron 1712238 1712379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1712378 1712379 . + . intron_id 0 ; splice_site "AT" KQ414915.1 exonerate:protein2genome:local cds 1712380 1712651 . + . KQ414915.1 exonerate:protein2genome:local exon 1712380 1712651 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711883 1712651 529 + . alignment_id 3 ; Query AmOr88 ; Align 1711883 185 126 ; Align 1712021 227 216 ; Align 1712382 300 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 391 Query range: 184 -> 388 Target range: 1688334 -> 1689747 185 : GlnValLeuSerAlaTyrGluIleGlyIleCysTyrHisCysPheAspAsnLeuLe : 203 |||!.!|||!!!!.!|||:!!|||||| !..!||| !|||! !|||!..!!!!! GlnAlaLeuCysValTyrGlnIleGlyAlaAlaTyrIleCysSerAspThrPhePh 1688335 : CAGGCGCTGTGCGTGTATCAAATCGGCGCCGCCTATATCTGCTCCGACACGTTTTT : 1688389 204 : uPheValIleAsnLeuTyrThrAlaGlyGlnPheArgIleLeuArgTyrArgPheG : 222 !! !:!!:!:|||:!!:!!..! ! !!|||||||||||||||!.!||||||.!. eCysMetLeuAsnMetHisValIleCysGlnPheArgIleLeuAsnTyrArgLeuL 1688390 : CTGCATGCTGAACATGCACGTGATCTGCCAGTTCCGTATACTAAATTACAGACTGT : 1688446 223 : luAsnIleCysGlyLysAsnAspAspLysAsnTyrTyrLysValSerLysSerSer : 240 !|||!!:!! ! ! !|||!!:::! !!!!!.! !!!! euAsnMetTrpProValIleAspGluArg---------------ThrAsnMetThr 1688447 : TGAACATGTGGCCGGTCATCGACGAGCGA---------------ACGAACATGACC : 1688485 241 : LysTyrCysIleAsnGluTyrLysSerPheLysThrCysValGlnGlnHisGlnAl : 259 :!!||| ! !!!. |||! !.!.!.! ! !|||:!!:!!.!.||||||:! GluTyrThrAsnLysCysTyrThrLysLeuIleAspCysIleLysAsnHisGlnSe 1688486 : GAATACACGAACAAATGTTACACCAAGCTGATAGATTGCATCAAAAATCATCAGTC : 1688542 260 : aLeuIleGluTyrCysLysLysLeuGluAspValPheSerIleIleValLeuAlaG : 278 !|||||||||!:!||| !|||||||||:!!|||!:!!!!:!:! !:!!|||!.!! rLeuIleGluPheCysValLysLeuGluAsnValTyrThrLeuThrIleLeuGlyH 1688543 : GTTGATCGAGTTCTGCGTGAAACTCGAGAACGTGTACACGTTGACTATACTCGGCC : 1688599 279 : lnValLeuLeuPheSerLeuLeuIleCysLeuAspGlyTyrLeuValLeuMet > : 296 !.:!!:!!:!!||||||||||||!!:|||!!!||| !||| !|||:!!:!! isIleValValPheSerLeuLeuMetCysPheAspThrTyrGluValValLeu++ 1688600 : ACATAGTGGTCTTCAGCTTGTTGATGTGCTTCGACACGTACGAGGTAGTTCTGgt. : 1688655 297 : >>> Target Intron 1 >>>> GluAspThrSerArgAlaLysArgValIle : 305 816 bp ! ! ! ..! !!! !.!!! !|||:!!||| ++AlaLysValProThrThrThrArgLeuIle 1688656 : ........................agGCAAAGGTACCTACCACGACGCGCCTCATA : 1689496 306 : PheThrPheHisLeuMetGlyCysMetCysGlnLeuLeuMetPheThrTyrSerCy : 324 ||| !||||||:!!!!:||| !!.!. !!..::::::...|||||||||||||| PheLeuPheHisMetIleGlySerPheIleHisIleIlePhePheThrTyrSerCy 1689497 : TTCTTATTCCACATGATCGGTAGCTTCATCCacataattttcttcacgtACAGTTG : 1689553 325 : sAspCysLeuMetHisAspSerMetSerValAlaAsnAlaAlaTyrAsnSerLeuT : 343 |! ! !!|||!!:.!.!!:||||||..!:!!|||!..|||.!!||| .!!:!!| sGlyGlyLeuIleGluGluSerMetAspIleAlaThrAlaThrTyrAlaGlyMetT 1689554 : TGGTGGTTTGATAGAAGAGAGTATGGATATTGCAACAGCAACGTATGCAGGAATGT : 1689610 344 : rpProCysLeuProMetAspLysTyrGlyLysSerLeuArgLysAspLeuThrPhe : 361 || !! !|||||||||:!!||| !||||||! !:!!||| !:!!:!!! !!!. rpThrValLeuProMetAsnLysValGlyLysMetIleArgGlyAsnMetLysLeu 1689611 : GGACGGTTTTGCCAATGAATAAAGTTGGCAAAATGATACGAGGAAATATGAAGTTA : 1689664 362 : ValIleMetArgSerArgSerProCysCysLeuThrAlaCysGlyPhePheProVa : 380 :!!! !:!:|||||| !..!|||||||||:!!|||||| !!|||||||||||||| MetThrValArgSerLeuGlnProCysCysIleThrAlaGlyGlyPhePheProVa 1689665 : ATGACCGTAAGGTCGTTGCAACCGTGTTGCATAACTGCTGGTGGATTCTTTCCTGT : 1689721 381 : lSerLeuGluThrTyrThrGlyIle : 388 |||||||:!!||| !|||!.!:!! lSerLeuLysThrAlaThrAlaVal 1689722 : CTCCTTGAAAACTGCTACCGCGGTA : 1689747 vulgar: AmOr88 184 388 . KQ414915.1 1688334 1689747 + 391 M 47 141 G 5 0 M 59 177 5 0 2 I 0 812 3 0 2 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688335 1689747 391 + . gene_id 4 ; sequence AmOr88 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688335 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688335 1688652 . + . insertions 0 ; deletions 5 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689747 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689747 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688335 1689747 391 + . alignment_id 4 ; Query AmOr88 ; Align 1688335 185 141 ; Align 1688476 237 177 ; Align 1689469 296 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 281 Query range: 184 -> 297 Target range: 1699632 -> 1699977 185 : GlnValLeuSerAlaTyrGluIleGlyIleCysTyrHisCysPheAspAsnLeuLe : 203 |||||||||||| !|||.!.:!!|||:!!|||||| !||||||||||||||||| GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1699633 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1699687 204 : uPheValIleAsnLeuTyrThrAlaGlyGlnPheArgIleLeuArgTyrArgPheG : 222 |! !:!!!!:||||||:!!.!!||| !|||||||||||||||!:!||||||!!.. uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1699688 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1699744 223 : luAsnIleCysGlyLysAsnAspAspLysAsnTyrTyrLysValSerLysSer<-> : 240 .!|||:!: !!! !! !||| ! :!! !! !!!!.! !|||!..:!! erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1699745 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1699798 241 : <->SerLysTyrCysIleAsnGluTyrLysSerPheLysThrCysValGlnGlnHi : 257 |||:::!:!... ||| ||||||:!!||||||!.!||||||!:!||||| LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHi 1699799 : CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACA : 1699855 258 : sGlnAlaLeuIleGluTyrCysLysLysLeuGluAspValPheSerIleIleValL : 276 |||| !! !||| !|||||| ! !:!|||.!.!!::!!|||!!!:!!||||||| sGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValL 1699856 : TCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTAC : 1699912 277 : euAlaGlnValLeuLeuPheSerLeuLeuIleCysLeuAspGlyTyrLeuValLeu : 294 ||!.!!!.:!!|||:!!|||||||||||||||||||||! !|||!:!! !|||||| euGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeu 1699913 : TCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTC : 1699966 295 : MetGluAsp : 297 :!:|||:!! ValGluAsn 1699967 : GTAGAAAAC : 1699977 vulgar: AmOr88 184 297 . KQ414915.1 1699632 1699977 + 281 M 55 165 G 0 6 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699633 1699977 281 + . gene_id 5 ; sequence AmOr88 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1699633 1699977 . + . KQ414915.1 exonerate:protein2genome:local exon 1699633 1699977 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699633 1699977 281 + . alignment_id 5 ; Query AmOr88 ; Align 1699633 185 165 ; Align 1699804 240 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 278 Query range: 300 -> 398 Target range: 1702974 -> 1703268 301 : AlaLysArgValIlePheThrPheHisLeuMetGlyCysMetCysGlnLeuLeuMe : 319 |||!:!|||:!!! !|||..!||||||:!!:!:||| !!:!:||||||||||||:! AlaArgArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLeuLe 1702975 : GCGAGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATTGCT : 1703029 320 : tPheThrTyrSerCysAspCysLeuMetHisAspSerMetSerValAlaAsnAlaA : 338 :|||||||||||||||||| !!|||!!:.!.!!:|||! !!:!:!!!.!!.!||| uPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaI 1703030 : ATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGA : 1703086 339 : laTyrAsnSerLeuTrpProCysLeuProMetAspLysTyrGlyLysSerLeuArg : 356 !||| !.!!! !||| ! !||||||||||||||| !|||!:!!!!|||||| leTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArg 1703087 : TATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGA : 1703140 357 : LysAspLeuThrPheValIleMetArgSerArgSerProCysCysLeuThrAlaCy : 375 !:!|||||||||.!.||||||:!:|||||||||!.! !! !!|||||||||||| ! ArgAspLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSe 1703141 : AGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAG : 1703197 376 : sGlyPhePheProValSerLeuGluThrTyrThrGlyIleLeuSerValAlaValS : 394 !|||||||||||||||||||||||||||! !||| !:!!!!!!:! !!:!! !!| rGlyPhePheProValSerLeuGluThrCysThrThrValPheAsnPheSerPheS 1703198 : CGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATTTCTCATTCT : 1703254 395 : erTrpPheThrSer : 398 || ! .!! ||| erGlyIleCysSer 1703255 : CTGGAATTtgttca : 1703268 vulgar: AmOr88 300 398 . KQ414915.1 1702974 1703268 + 278 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702975 1703268 278 + . gene_id 6 ; sequence AmOr88 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702975 1703268 . + . KQ414915.1 exonerate:protein2genome:local exon 1702975 1703268 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702975 1703268 278 + . alignment_id 6 ; Query AmOr88 ; Align 1702975 301 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 275 Query range: 184 -> 295 Target range: 1702013 -> 1702352 185 : GlnValLeuSerAlaTyrGluIleGlyIleCysTyrHisCysPheAspAsnLeuLe : 203 |||||||||||| !|||.!.:!!|||:!!|||||| !||||||||||||||||| GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 204 : uPheValIleAsnLeuTyrThrAlaGlyGlnPheArgIleLeuArgTyrArgPheG : 222 |! !:!!!!:||||||:!!.!!||| !|||||||||||||||!:!||||||!!.. uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 223 : luAsnIleCysGlyLysAsnAspAspLysAsnTyrTyrLysValSerLysSer<-> : 240 .!|||:!: !!! !! !||| ! :!! !! !!!!.! !|||!..:!! erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1702179 241 : <->SerLysTyrCysIleAsnGluTyrLysSerPheLysThrCysValGlnGlnHi : 257 |||:::!:!... ||| ||||||:!!||||||!.!||||||!:!||||| LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHi 1702180 : CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACA : 1702236 258 : sGlnAlaLeuIleGluTyrCysLysLysLeuGluAspValPheSerIleIleValL : 276 |||| !! !||| !|||||| ! !:!|||.!.!!::!!|||!!!:!!||||||| sGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValL 1702237 : TCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTAC : 1702293 277 : euAlaGlnValLeuLeuPheSerLeuLeuIleCysLeuAspGlyTyrLeuValLeu : 294 ||!.!!!.:!!|||:!!|||||||||||||||||||||! !|||!:!! !|||||| euGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeu 1702294 : TCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTC : 1702347 295 : Met : 295 :!! Val 1702348 : GTG : 1702352 vulgar: AmOr88 184 295 . KQ414915.1 1702013 1702352 + 275 M 55 165 G 0 6 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1702352 275 + . gene_id 7 ; sequence AmOr88 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702014 1702352 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702352 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1702352 275 + . alignment_id 7 ; Query AmOr88 ; Align 1702014 185 165 ; Align 1702185 240 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 0 -> 64 Target range: 1700446 -> 1700638 1 : MetAsnGlyArgAsnValArgAsnLeuSerIleThrValThrAlaPheTyrMetLy : 19 |||!.!..!!:!!!. !|||:!!:!!|||:!:!:!|||||||||||||||:!!|| MetThrSerLysLysAsnArgAspValSerValSerValThrAlaPheTyrLeuLy 1700447 : ATGACTTCGAAGAAGAACAGGGACGTATCAGTGAGCGTCACAGCTTTCTACTTGAA : 1700501 20 : sValAlaGlyPheTrpValAlaAsnAsnTyrAlaGluLysArgArgArgAsnValA : 38 |:!! !|||||||||:!!|||:!!!.!|||! !|||||||||||||||!!. !!| sIleIleGlyPheTrpLeuAlaAspThrTyrGluGluLysArgArgArgLysPheA 1700502 : AATCATCGGCTTCTGGTTAGCTGACACTTACGAGGAGAAACGTCGAAGAAAGTTCG : 1700558 39 : laMetPheValThrIlePhePheAlaPheMetGlyIleSerIleGluGlyArgAsp : 56 ||..! ! !||||||.!!.!. !.!. !.!:!: !:!!|||! !|||||| laGlnAsnCysThrIleLeuMetLeuMetCysAlaValLeuLeuGluValArgAsp 1700559 : CGCAGAATTGCACGATACTTATGCTTATGTGCGCTGTGCTGCTTGAGGTGAGGGAT : 1700612 57 : LeuTyrPheAlaTrpGlyAspPhe : 64 :!!||| ! !|||||||||||| IleTyrHisIleTrpGlyAspPhe 1700613 : ATCTATCACATCTGGGGAGATTTC : 1700638 vulgar: AmOr88 0 64 . KQ414915.1 1700446 1700638 + 172 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1700447 1700638 172 + . gene_id 8 ; sequence AmOr88 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1700447 1700638 . + . KQ414915.1 exonerate:protein2genome:local exon 1700447 1700638 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1700447 1700638 172 + . alignment_id 8 ; Query AmOr88 ; Align 1700447 1 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 65 -> 149 Target range: 1698547 -> 1698796 66 : AspSerIlePheAlaGlyCysAsnValIleThrIleValLeuValLeuLeuLysIl : 84 |||!!! !!:!.!!!.!||||||:!!:!! !:!::!!:!!||||||||||||:! AspCysAlaTyrThrAlaCysAsnIleLeuCysLeuIleMetValLeuLeuLysLe 1698548 : gACTGTGCTTACACCGCTTGTAACATTCTCTGCCTGATTATGGTACTGTTAAAGCT : 1698602 85 : ePheValLeuTyrIleAsnAsnGluGluLeuLeuAsnValValAsnTyrAlaLysT : 103 :||||||:!!!:!|||:!!!..:!!|||!!!:!!.!.:!:::: ||| uPheValValPheIleHisArgLysGluPheIleGluLeuLeuValTyrMetTyrL 1698603 : GTTCGTTGTATTCATACACAGGAAAGAATTCATCGAACTgcttgtatatatgtaca : 1698659 104 : hrAsnPheTrpArgGluSerAsnTyrGluProHisGluLysLysIleIleAspAsp : 121 ||||||||| .!. !||||||!!: !:!!||| ! !:!::!:.!.||| ysAsnPheTrp---HisLeuAsnTyrAspCysAsnGluLeuLeuLeuLeuGlnAsp 1698660 : aaaatttttgg---cACCTCAATTACGATTGCAACGAACTACTACTGCTGCAAGAC : 1698710 122 : TyrArgArgLeuCysSerPheLeuValCysSerPheThrPhePheAlaGlnGlyTh : 140 ! !||||||:!! !!!!!.!.! !:!! ! !.!!!.!|||! !||||||||||| CysArgArgIleSerThrIleCysIleThrLeuIleAsnPheCysAlaGlnGlyTh 1698711 : TGCAGAAGAATTAGCACTATATGTATCACGTTGATTAACTTCTGTGCTCAAGGCAC : 1698767 141 : rValValCysPheValIleThrProVal : 149 |:!!||| !!!:!|||:!!||||||:!! rIleValSerTyrValLeuThrProIle 1698768 : AATTGTCAGCTACGTGCTAACACCTATT : 1698796 vulgar: AmOr88 65 149 . KQ414915.1 1698547 1698796 + 171 M 41 123 G 1 0 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1698548 1698796 171 + . gene_id 9 ; sequence AmOr88 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1698548 1698796 . + . KQ414915.1 exonerate:protein2genome:local exon 1698548 1698796 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1698548 1698796 171 + . alignment_id 9 ; Query AmOr88 ; Align 1698548 66 123 ; Align 1698671 108 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 151 -> 231 Target range: 1681725 -> 1682088 152 : AsnAsnGlyLysAsnGluSerAspArgIleHisProPheAsnMet<->TrpPheAs : 169 |||! !||||||!:!!!:..!!!:||||||! !|||||| .!. !|||:! AsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAs 1681726 : AACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAA : 1681780 170 : pArgSerLeuSerLeuSerProTyrTyrGluIleIleTyrThrIleGln >>>> : 186 ! ! !! !||||||!!!|||||||||||||||::::::..!|||:!! nLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681781 : CTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt..... : 1681833 187 : Target Intron 1 >>>> ValLeuSerAlaTyrGluIleGlyIleCysTyrH : 197 120 bp ..!||||||!.! .!. |||||||||!:! ++ThrLeuSerValValHisSerGlyIleCysPheC 1681834 : ....................agACATTATCTGTGGTGCATTCGGGAATTTGTTTCT : 1681984 198 : isCysPheAspAsnLeuLeuPheValIleAsnLeuTyrThrAlaGlyGlnPheArg : 215 !||||||||||||!!!|||! !:!!:!:!:!:!!:!!..!!.!|||||||||!:! ysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLys 1681985 : GTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAG : 1682038 216 : IleLeuArgTyrArgPheGluAsnIleCysGlyLysAsnAspAspLys : 231 ||||||!:! !!!:!.!!:!!!..:!!! .!!:!!!!.......||| IleLeuGlnAsnLysLeuGlnThrValLeuSerGluLysSerSerLys 1682039 : ATTTTACAAAACAAACTCCAAACAGTATTGAGTGAGAAatcttcgaaa : 1682088 vulgar: AmOr88 151 231 . KQ414915.1 1681725 1682088 + 165 M 15 45 G 0 3 M 19 57 5 0 2 I 0 116 3 0 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681726 1682088 165 + . gene_id 10 ; sequence AmOr88 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681726 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681726 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682088 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682088 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681726 1682088 165 + . alignment_id 10 ; Query AmOr88 ; Align 1681726 152 45 ; Align 1681774 167 57 ; Align 1681951 186 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 301 -> 388 Target range: 1682556 -> 1682814 302 : LysArgValIlePheThrPheHisLeuMetGlyCysMetCysGlnLeuLeuMetPh : 320 ||||||:!!:!:||| ! !:!!!!!:!:||| ! :!! |||:::...:::.. LysArgLeuLeuPheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePheLeuIl 1682557 : AAACGATTGTTGTTCCTAAATTACTTTCTCGGTGGAGTGATacagatatttttaat : 1682611 321 : eThrTyrSerCysAspCysLeuMetHisAspSerMetSerValAlaAsnAlaAlaT : 339 .||| !:!|||:!! !:!!|||.!..!.||| :!!:!!!.!!..||| !| eThrLeuAsnCysAsnAspIleMetGluGlnSerGlyAlaIleGlyThrAlaIleT 1682612 : aacccTAAATTGCAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAGCGATCT : 1682668 340 : yrAsnSerLeuTrpProCysLeuProMetAspLysTyrGlyLysSerLeuArgLys : 357 ||!:!!!! !||| ! ! ::: ::: ..!!!!|||||| yrSerCysAsnTrpGluArgAsnValTyrAsnHisPhe---TyrGlnPheArgLys 1682669 : ACAGTTGTAATTGGGAGAGGAAtgtttataatcatttt---taccAGTTCAGAAAG : 1682719 358 : AspLeuThrPheValIleMetArgSerArgSerProCysCysLeuThrAlaCysGl : 376 |||:!!! !.!!|||!!::!:|||:!!!:! !!||||||! !:!!:!!|||... AspMetMetIleValMetValArgAlaLysArgProCysTyrIleSerAlaAlaLy 1682720 : GATATGATGATTGTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGCAGCGAA : 1682776 377 : yPhePheProValSerLeuGluThrTyrThrGlyIle : 388 !|||||||||:!!|||||||||:!!!:!||| ::: sPhePheProIleSerLeuGluSerPheThrLysVal 1682777 : ATTCTTTCCAATCTCCCTTGAATCGTTCACGAaggta : 1682814 vulgar: AmOr88 301 388 . KQ414915.1 1682556 1682814 + 140 M 50 150 G 1 0 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682557 1682814 140 + . gene_id 11 ; sequence AmOr88 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1682557 1682814 . + . KQ414915.1 exonerate:protein2genome:local exon 1682557 1682814 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1682557 1682814 140 + . alignment_id 11 ; Query AmOr88 ; Align 1682557 302 150 ; Align 1682707 353 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 146 -> 186 Target range: 1711222 -> 1711342 147 : ThrProValPheValAsnAsnGlyLysAsnGluSerAspArgIleHisProPheAs : 165 |||! !|||! ||||||! !|||!:!||||||||||||||||||! ||||||!! ThrArgValSerValAsnIleGlyArgAsnGluSerAspArgIleLeuProPheLy 1711223 : ACTCGTGTTTCAGTGAATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAA : 1711277 166 : nMetTrpPheAspArgSerLeuSerLeuSerProTyrTyrGluIleIleTyrThrI : 184 .||||||.!!|||! ! !! !|||:!!!!!||||||:::||||||...:::|||: sMetTrpIleAspIleProThrSerMetThrProTyrPheGluIlePhePheThrL 1711278 : AATGTGGATTGATATACCGACATCGATGACACcgtattttgaaatattcttcaccT : 1711334 185 : leGlnVal : 186 !!|||||| euGlnVal 1711335 : TACAGGTA : 1711342 vulgar: AmOr88 146 186 . KQ414915.1 1711222 1711342 + 129 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711223 1711342 129 + . gene_id 12 ; sequence AmOr88 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1711223 1711342 . + . KQ414915.1 exonerate:protein2genome:local exon 1711223 1711342 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711223 1711342 129 + . alignment_id 12 ; Query AmOr88 ; Align 1711223 147 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 6 -> 63 Target range: 1692091 -> 1692262 7 : ArgAsnLeuSerIleThrValThrAlaPheTyrMetLysValAlaGlyPheTrpVa : 25 !:!:!!:!!||||||..! !:!! !|||! ||||||:!!!.!|||.!.|||:! LysAspIleSerIleValTrpSerPhePheLeuMetLysIleValGlyLeuTrpLe 1692092 : AAAGATATCTCGATCGTTTGGTCGTTCTTTTTGATGAAAATCGTAGGTCTGTGGCT : 1692146 26 : lAlaAsnAsnTyrAlaGluLysArgArgArgAsnValAlaMetPheValThrIleP : 44 !||| !:!! ! ||||||:!!|||||||||||| !!|||:!!.!! !|||:!: uAlaAlaAspGluAlaGluGlnArgArgArgAsnPheAlaLeuIleTyrThrLeuA 1692147 : AGCCGCCGACGAGGCTGAACAACGTCGGAGAAATTTCGCGCTGATTTACACGCTGA : 1692203 45 : hePheAlaPheMetGlyIleSerIleGluGlyArgAspLeuTyrPheAlaTrpGly : 62 ! !|||!!:!.! !!!|||! ! !||||||:!!|||!:!:!!|||||| snAlaIlePheIleAlaSerCysIleAlaMetArgAspIleTyrTyrSerTrpGly 1692204 : ACGCGATTTTTATCGCTTCGTGTATAGCAATGAGAGATATATACTATTCCTGGGGA : 1692257 63 : Asp : 63 :!! Asn 1692258 : AAC : 1692262 vulgar: AmOr88 6 63 . KQ414915.1 1692091 1692262 + 128 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1692092 1692262 128 + . gene_id 13 ; sequence AmOr88 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1692092 1692262 . + . KQ414915.1 exonerate:protein2genome:local exon 1692092 1692262 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1692092 1692262 128 + . alignment_id 13 ; Query AmOr88 ; Align 1692092 7 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 247 -> 295 Target range: 1677746 -> 1677890 248 : LysSerPheLysThrCysValGlnGlnHisGlnAlaLeuIleGluTyrCysLysLy : 266 :::...|||::: |||:!!!::!:!||| ! !||||||!!:||| :!!:: GlnLysPheGluLysCysLeuArgArgHisTyrLeuLeuIleAspTyrValGluGl 1677747 : cagaaattcgagaaatgcTTGCGTCGACACTATTTGCTCATTGACTACGTAGAGga : 1677801 267 : sLeuGluAspValPheSerIleIleValLeuAlaGlnValLeuLeuPheSerLeuL : 285 :|||...::::::|||!.! !! !:!!||| !|||:!!:!! !! ||||||| uLeuAsnAsnLeuPheLysTyrThrLeuLeuLeuGlnMetMetThrSerSerLeuL 1677802 : attgaataatttgttCAAATACACCCTTCTGTTACAGATGATGACCTCGAGTTTGT : 1677858 286 : euIleCysLeuAspGlyTyrLeuValLeuMet : 295 ||||||||:!!..!|||||| ! !|||:!! euIleCysMetSerGlyTyrGluCysLeuVal 1677859 : TAATCTGTATGTCTGGTTACGAATGTTTAGTG : 1677890 vulgar: AmOr88 247 295 . KQ414915.1 1677746 1677890 + 103 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1677747 1677890 103 + . gene_id 14 ; sequence AmOr88 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1677747 1677890 . + . KQ414915.1 exonerate:protein2genome:local exon 1677747 1677890 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1677747 1677890 103 + . alignment_id 14 ; Query AmOr88 ; Align 1677747 248 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 1323 Query range: 0 -> 399 Target range: 1685751 -> 1690091 1 : MetHisAlaThrProTyrSerAspValSerIleValValSerGlnPheLeuLeuLy : 19 |||!!.|||||| !|||!!!|||:!!|||:!! ... ||||||||||| MetGlnAlaThrLysTyrArgAspIleSerLeuLysCysGlyIlePheLeuLeuLy 1685752 : ATGCAGGCGACAAAATACAGGGATATTTCCCTCAAgtgtggaatttttcttttgaa : 1685806 20 : sLeuThrGlyValTrpMetThrValAsnAspGlyGluLysArgArgArgArgIleA : 38 ||||..!|||:!!||||||:!!:!!|||..!! !|||:!!||||||||||||.!!. sLeuValGlyLeuTrpMetSerMetAsnSerValGluGluArgArgArgArgPheT 1685807 : attagtCGGCCTCTGGATGTCCATGAACAGCGTCGAGGAGCGTCGAAGGAGGTTCA : 1685863 39 : laMetAlaTyrThrPheValIleGlnValTyrGlyLeuTyrLeuAsnIleGlyAsp : 56 !!:!! ! :!! !! !! !! !||||||:!!|||:!!|||:!!..!||| hrLeuPheGlySerValPheAlaLeuSerTyrGlyValTyrValAsnValAsnAsp 1685864 : CGTTGTTCGGATCAGTTTTCGCCCTTTCTTACGGCGTTTACGTGAACGTAAACGAT : 1685917 57 : IleTyrHisSerTrpAspAspLeuSer >>>> Target Intron 1 >>>> : 66 ||| !||||||!::|||||||||||| 1431 bp IleLeuHisSerPheAspAspLeuSer++ ++ 1685918 : ATTCTTCACAGCTTCGATGATCTGAGCgt.........................ag : 1687376 67 : HisCysIlePheLeuThrCysAsnThrLeuCysIleValLeuThrMetPheLysPh : 84 ||||||||||||||||||||||||||||||||||||:!!|||.!!!!:||||||.! HisCysIlePheLeuThrCysAsnThrLeuCysIleLeuLeuAlaIlePheLysIl 1687377 : cATTGCATCTTTCTGACTTGCAACACACTGTGCATTCTTCTGGCGATATTTAAGAT : 1687432 85 : eSerIleLeuPheIleArgArgThrGluPheLysAsnLeuIleLeuPheAlaArgL : 103 !! !|||||| !! !!.!|||||||||||||||.!.:!!:!!|||!:!|||!:!| ePheIleLeuSerAsnHisArgThrGluPheLysGluIleValLeuTyrAlaGlnL 1687433 : TTTCATACTAAGCAATCACAGAACGGAATTCAAGGAGATAGTCTTGTACGCGCAGA : 1687489 104 : ysAsnPheTrpHisLeuAspTyrAspArgHisGluThrIleLeuPheThrLysCys : 121 ||:!!||||||||| !:!!|||..!!:!.!.|||! !:!:|||!:! ! ! ||| ysHisPheTrpHisAspAsnTyrSerLysGluGluArgValLeuTyrGlyAspCys 1687490 : AGCATTTTTGGCATGATAATTACAGCAAAGAGGAGAGGGTGCTTTATGGAGATTGC : 1687543 122 : ArgLysPheCysThrLeuTrpThrLeuThrValPheSerPheThrGlnAlaSerLe : 140 !:!!:!||||||! !||||||..!:!! !:!!! !! !.!!|||||||||||||| GlnArgPheCysLysLeuTrpValIleLeuIleCysPheLeuThrGlnAlaSerLe 1687544 : CAGAGGTTCTGCAAACTATGGGTCATACTAATATGTTTCCTTACGCAAGCCTCTTT : 1687600 141 : uThrPheTyrIleIleThrProIleCys{A} >>>> Target Intron 2 >> : 150 |..!||||||.!!:!!||||||:!! !{|} 424 bp uValPheTyrPheValThrProLeuThr{A}++ 1687601 : AGTGTTCTACTTTGTCACACCACTCACT{G}gt....................... : 1687633 151 : >> {la}AsnIleGlyLysAsnLysSerGluArgIleLeuProPheLysMetTrp : 166 {||}|||!!:.!!::!|||||||||!!:|||:!!|||||||||||||||||| ++{la}AsnMetSerArgAsnLysSerAspArgValLeuProPheLysMetTrp 1687634 : ..ag{CA}AATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTGG : 1688102 167 : ValAspPheProLeuSerGluThrProTyrTyrGluIleMetPheValIleGln : 185 ||||||!::|||||||||!!:|||||||||||||||:!:||||||..!.!!||| ValAspTrpProLeuSerAspThrProTyrTyrGluLeuMetPheThrPheGln++ 1688103 : GTCGATTGGCCGCTATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAGgt : 1688159 186 : >>>> Target Intron 3 >>>> LeuLeuThrValGlnGlnIleGlyIleAl : 194 179 bp !||| !||| ! ||||||||| !|| ++AlaLeuCysValTyrGlnIleGlyAlaAl 1688160 : .........................agGCGCTGTGCGTGTATCAAATCGGCGCCGC : 1688365 195 : aTyrThrCysAsnAspAsnPheLeuCysValLeuAsnMetHisValValCysGlnP : 213 ||||! !|||::!|||!..|||!!!|||:!!|||||||||||||||:!!||||||| aTyrIleCysSerAspThrPhePheCysMetLeuAsnMetHisValIleCysGlnP 1688366 : CTATATCTGCTCCGACACGTTTTTCTGCATGCTGAACATGCACGTGATCTGCCAGT : 1688422 214 : heArgIleLeuGlnHisArgLeuThrLysLeuTrpSerIleIleAspGluArgAla : 231 |||||||||||.!.:!!|||||| !!!.:!!||| !!:!!||||||||||||.!! heArgIleLeuAsnTyrArgLeuLeuAsnMetTrpProValIleAspGluArgThr 1688423 : TCCGTATACTAAATTACAGACTGTTGAACATGTGGCCGGTCATCGACGAGCGAACG : 1688476 232 : AspLysPheAsnTyrAlaSerLysCysTyrGluAlaLeuLysGluCysIleArgGl : 250 :!!! ! !.!.|||.!!!:!||||||||| !|||! !!!:||||||!:!.! AsnMetThrGluTyrThrAsnLysCysTyrThrLysLeuIleAspCysIleLysAs 1688477 : AACATGACCGAATACACGAACAAATGTTACACCAAGCTGATAGATTGCATCAAAAA : 1688533 251 : nHisGlnSerLeuIleGluPheCysAspLysLeuGluHisValTyrThrLeuProI : 269 .||||||||||||||||||||||||! |||||||||:!!|||||||||||| !!| nHisGlnSerLeuIleGluPheCysValLysLeuGluAsnValTyrThrLeuThrI 1688534 : TCATCAGTCGTTGATCGAGTTCTGCGTGAAACTCGAGAACGTGTACACGTTGACTA : 1688590 270 : lePheGlyHisValValValPheSerLeuLeuMetCysPheAspThrTyrGluIle : 287 ||.!!||||||:!!|||||||||||||||||||||||||||||||||||||||:!! leLeuGlyHisIleValValPheSerLeuLeuMetCysPheAspThrTyrGluVal 1688591 : TACTCGGCCACATAGTGGTCTTCAGCTTGTTGATGTGCTTCGACACGTACGAGGTA : 1688644 288 : PheLeu >>>> Target Intron 4 >>>> AlaAsnValProValSerMet : 296 !!||| 816 bp |||!!.||||||..!!!!! ! ValLeu++ ++AlaLysValProThrThrThr 1688645 : GTTCTGgt.........................agGCAAAGGTACCTACCACGACG : 1689487 297 : ArgLeuIlePhePhePheHisMetValGlySerPheIleHisIleIlePhePheTh : 315 ||||||||||||!!.|||||||||:!!||||||||||||||||||||||||||||| ArgLeuIlePheLeuPheHisMetIleGlySerPheIleHisIleIlePhePheTh 1689488 : CGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCacataattttcttcac : 1689544 316 : rTyrIleCysGlyGlyLeuIleGluGluSerSerAsnIleGlyLeuAlaThrTyrS : 334 ||||! !||||||||||||||||||||||||! !:!!|||!.! !|||||||||: rTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleAlaThrAlaThrTyrA 1689545 : gtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCAACAGCAACGTATG : 1689601 335 : erGlyTrpTrpThrValLeuProMetAspGluAlaGlyArgMetLeuArgGluAsp : 352 !!||| !||||||||||||||||||:!!:!!!.!|||!:!|||:!!|||! !:!! laGlyMetTrpThrValLeuProMetAsnLysValGlyLysMetIleArgGlyAsn 1689602 : CAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAATGATACGAGGAAAT : 1689655 353 : ValLysValMetIleMetLysSerMetArgProCysHisLeuSerAlaGlyGlyPh : 371 :!!|||:!!|||! !:!:!:!|||:!!!:!|||||| !:!!!!!||||||||||| MetLysLeuMetThrValArgSerLeuGlnProCysCysIleThrAlaGlyGlyPh 1689656 : ATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAACTGCTGGTGGATT : 1689712 372 : ePheProValSerLeuGluThrSerThrAla >>>> Target Intron 5 >> : 382 ||||||||||||||||:!!|||:!!|||||| 293 bp ePheProValSerLeuLysThrAlaThrAla++ 1689713 : CTTTCCTGTCTCCTTGAAAACTGCTACCGCGgt....................... : 1689747 383 : >> LeuMetSerSerThrLeuSerTyrPheThrLeuMetArgGluSerSerLysA : 399 |||||||||||||||:!!||||||||||||||||||||||||!!!||| ! ++LeuMetSerSerThrMetSerTyrPheThrLeuMetArgGluArgSerAlaG 1689748 : ..agCTAATGAGTTCCACAATGTCGTATTTCACGCTCATGAGAGAGAGATCGGCTG : 1690089 400 : sp : 399 !: lu 1690090 : AA : 1690091 vulgar: AmOr86 0 399 . KQ414915.1 1685751 1690091 + 1323 M 65 195 5 0 2 I 0 1427 3 0 2 M 84 252 S 0 1 5 0 2 I 0 420 3 0 2 S 1 2 M 34 102 5 0 2 I 0 175 3 0 2 M 105 315 5 0 2 I 0 812 3 0 2 M 92 276 5 0 2 I 0 289 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1685752 1690091 1323 + . gene_id 1 ; sequence AmOr86 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1685752 1685946 . + . KQ414915.1 exonerate:protein2genome:local exon 1685752 1685946 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1685947 1685948 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1685947 1687377 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1687376 1687377 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1687378 1687630 . + . KQ414915.1 exonerate:protein2genome:local exon 1687378 1687630 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1687631 1687632 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1687631 1688054 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1688053 1688054 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1688055 1688158 . + . KQ414915.1 exonerate:protein2genome:local exon 1688055 1688158 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688159 1688160 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688159 1688337 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1688336 1688337 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1688338 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688338 1688652 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 5 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 5 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 4 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690091 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690091 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1685752 1690091 1323 + . alignment_id 1 ; Query AmOr86 ; Align 1685752 1 195 ; Align 1687378 66 252 ; Align 1688057 151 102 ; Align 1688338 185 315 ; Align 1689469 290 276 ; Align 1690038 382 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 430 Query range: 66 -> 255 Target range: 1698550 -> 1699848 67 : CysIlePheLeuThrCysAsnThrLeuCysIleValLeuThrMetPheLysPheSe : 85 ||| !!:! !.!!||||||! !||||||:!::!!:!!..!:!!!!.|||.!.! CysAlaTyrThrAlaCysAsnIleLeuCysLeuIleMetValLeuLeuLysLeuPh 1698551 : TGTGCTTACACCGCTTGTAACATTCTCTGCCTGATTATGGTACTGTTAAAGCTGTT : 1698605 86 : rIleLeuPheIleArgArgThrGluPheLysAsnLeuIleLeuPheAlaArgLysA : 104 !:!!:!!||||||!.!|||! !||||||! .!.|||::::::::: |||| eValValPheIleHisArgLysGluPheIleGluLeuLeuValTyrMetTyrLysA 1698606 : CGTTGTATTCATACACAGGAAAGAATTCATCGAACTgcttgtatatatgtacaaaa : 1698662 105 : snPheTrpHisLeuAspTyrAspArgHisGluThrIleLeuPheThrLysCysArg : 122 ||||||||||||||:!!|||||| !!:!!||| !:!!|||.!. ! ! |||||| snPheTrpHisLeuAsnTyrAspCysAsnGluLeuLeuLeuLeuGlnAspCysArg 1698663 : atttttggcACCTCAATTACGATTGCAACGAACTACTACTGCTGCAAGACTGCAGA : 1698716 123 : LysPheCysThrLeuTrpThrLeuThrValPheSerPheThrGlnAlaSerLeuTh : 141 !:!.!! !!|||:!!!! ! ! ! !:!! !! !! !.!!|||!.!!!!:!!.. ArgIleSerThrIleCysIleThrLeuIleAsnPheCysAlaGlnGlyThrIleVa 1698717 : AGAATTAGCACTATATGTATCACGTTGATTAACTTCTGTGCTCAAGGCACAATTGT : 1698773 142 : rPheTyrIleIleThrProIleCys{A} >>>> Target Intron 1 >>>> : 150 ! !|||:!::!!||||||||| {|} 232 bp lSerTyrValLeuThrProIleIle{A}++ + 1698774 : CAGCTACGTGCTAACACCTATTATA{G}gt.........................a : 1699031 151 : {la}AsnIleGlyLysAsnLysSerGluArgIleLeuProPheLysMetTrpVal : 167 {||}|||||||||:::|||!..|||!!:|||:!:|||||||||!!.||||||||| +{la}AsnIleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTrpVal 1699032 : g{ca}aatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTGGGTT : 1699083 168 : AspPheProLeuSerGluThrProTyrTyrGluIleMetPheValIleGln >>> : 185 |||!!.|||||||||! !:!!||| |||||||||:!!||||||:!!||| AspLeuProLeuSerValSerProThrTyrGluIleValPheValLeuGln++ 1699084 : GATTTGCCGCTGTCTGTGTCACCAACGTACGAAATAGTGTTCGTGCTTCAGgt... : 1699139 186 : > Target Intron 2 >>>> LeuLeuThrValGlnGlnIleGlyIleAlaTy : 195 499 bp :!!|||:!!:!! ! !!.:!!|||:!!..!|| ++ValLeuSerLeuTyrHisValGlyValCysTy 1699140 : ......................agGTTCTGTCTTTGTACCACGTTGGTGTATGTTA : 1699666 196 : rThrCysAsnAspAsnPheLeuCysValLeuAsnMetHisValValCysGlnPheA : 214 |! !||| !||||||.!!||||||:!!:!!|||:!!|||!.!!.! !||||||| rIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheA 1699667 : CATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTC : 1699723 215 : rgIleLeuGlnHisArgLeuThrLysLeuTrpSerIleIleAspGluArgAlaAsp : 232 |||||||||||:!!||||||:!!!!.||| ! ..!! ! ! :!!!:!!.!||| rgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAsp 1699724 : GTATACTGCAATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGAT : 1699777 233 : LysPheAsnTyrAlaSerLysCysTyrGluAlaLeuLysGluCysIleArgGlnHi : 251 ! !.!.! !::!:!! ! !... ! !:!!.!.||| !!:! ! AspAsnGluSerSerAlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPh 1699778 : GACAATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTT : 1699834 252 : sGlnSerLeuIle : 255 !:!!!:!! !:!! eLysAsnCysVal 1699835 : TAAAAATTGCGTA : 1699848 vulgar: AmOr86 66 255 . KQ414915.1 1698550 1699848 + 430 M 83 249 S 0 1 5 0 2 I 0 228 3 0 2 S 1 2 M 34 102 5 0 2 I 0 495 3 0 2 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1698551 1699848 430 + . gene_id 2 ; sequence AmOr86 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1698551 1698800 . + . KQ414915.1 exonerate:protein2genome:local exon 1698551 1698800 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1698801 1698802 . + . intron_id 1 ; splice_site "Gt" KQ414915.1 exonerate:protein2genome:local intron 1698801 1699032 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699031 1699032 . + . intron_id 0 ; splice_site "Ag" KQ414915.1 exonerate:protein2genome:local cds 1699033 1699136 . + . KQ414915.1 exonerate:protein2genome:local exon 1699033 1699136 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699137 1699138 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699137 1699635 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1699634 1699635 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699636 1699848 . + . KQ414915.1 exonerate:protein2genome:local exon 1699636 1699848 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1698551 1699848 430 + . alignment_id 2 ; Query AmOr86 ; Align 1698551 67 249 ; Align 1699035 151 102 ; Align 1699636 185 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 393 Query range: 234 -> 396 Target range: 1702187 -> 1703653 235 : AsnTyrAlaSerLysCysTyrGluAlaLeuLysGluCysIleArgGlnHisGlnSe : 253 ..!!:!|||..!!!.||||||:!!|||!!!|||.!.|||:!!||||||||||||!: ArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHisGlnAs 1702188 : CGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACATCAGAA : 1702242 254 : rLeuIleGluPheCysAspLysLeuGluHisValTyrThrLeuProIlePheGlyH : 272 !! !||| !!:!||| !!!:!|||.!..!.:!!!:!|||:!! !:!!.!!|||| nHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValLeuGlyH 1702243 : TCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTACTCGGAC : 1702299 273 : isValValValPheSerLeuLeuMetCysPheAspThrTyrGluIlePheLeuAla : 290 ||:!!:!!|||||||||||||||!!:|||.!.! ! !!:!:!!:!:.!!:!!!.! isIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeuValVal 1702300 : ACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTCGTGGTA : 1702353 291 : AsnValProVal{S} >>>> Target Intron 1 >>>> {er}MetArgLe : 298 ..! !! !! !{ } 607 bp {!!}! !||||| ArgPheValGlu{P}-+ ++{ro}ArgArgLe 1702354 : CGTTTCGTTGAA{C}ct.........................ag{CG}AGGCGGCT : 1702984 299 : uIlePhePhePheHisMetValGlySerPheIleHisIleIlePhePheThrTyrI : 317 |! !||| ! ||||||!!:|||||||||.!. !!!.:!!:!:.!.|||||||||! uThrPheValPheHisIleValGlySerLeuCysGlnLeuLeuLeuPheThrTyrS 1702985 : TACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATTGCTATTTACCTATA : 1703041 318 : leCysGlyGlyLeuIleGluGluSerSerAsnIleGlyLeuAlaThrTyrSerGly : 335 !|||! !||||||||||||||||||!!!||||||||| !|||! !||| !||| erCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaIleTyrLeuGly 1703042 : GCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGATATACCTCGGG : 1703095 336 : TrpTrpThrValLeuProMetAspGluAlaGlyArgMetLeuArgGluAspValLy : 354 |||! ! !||||||||||||:!!|||||||||! !||||||..!|||:!!! ProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArgArgAspLeuTh 1703096 : CCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGAAGAGACTTGAC : 1703152 355 : sValMetIleMetLysSerMetArgProCysHisLeuSerAlaGlyGlyPhePheP : 373 !:!!:!:|||:!:!:!|||! !:! !! !! !|||!!!|||.!!|||||||||| rMetValIleValArgSerArgLysSerSerCysLeuThrAlaSerGlyPhePheP 1703153 : AATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAGCGGATTCTTTC : 1703209 374 : roValSerLeuGluThrSerThrAla >>>> Target Intron 2 >>>> L : 382 |||||||||||||||||!!!|||.!! 373 bp : roValSerLeuGluThrCysThrThr++ ++V 1703210 : CTGTTTCGCTGGAAACTTGTACCACGgt.........................agG : 1703609 383 : euMetSerSerThrLeuSerTyrPheThrLeuMetArgGluSer : 396 !!:!:|||!!!.!!:!!|||||||||||||||:!:|||.!.||| alLeuSerThrAlaMetSerTyrPheThrLeuLeuArgHisSer 1703610 : TGCTCAGTACAGCGATGTCATACTTCACTTTATTAAGGCACTCT : 1703653 vulgar: AmOr86 234 396 . KQ414915.1 1702187 1703653 + 393 M 60 180 S 0 1 5 0 2 I 0 603 3 0 2 S 1 2 M 86 258 5 0 2 I 0 369 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702188 1703653 393 + . gene_id 3 ; sequence AmOr86 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702188 1702368 . + . KQ414915.1 exonerate:protein2genome:local exon 1702188 1702368 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1702369 1702370 . + . intron_id 1 ; splice_site "CT" KQ414915.1 exonerate:protein2genome:local intron 1702369 1702975 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702974 1702975 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1702976 1703235 . + . KQ414915.1 exonerate:protein2genome:local exon 1702976 1703235 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1703236 1703237 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1703236 1703608 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1703607 1703608 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1703609 1703653 . + . KQ414915.1 exonerate:protein2genome:local exon 1703609 1703653 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702188 1703653 393 + . alignment_id 3 ; Query AmOr86 ; Align 1702188 235 180 ; Align 1702978 296 258 ; Align 1703609 382 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 386 Query range: 150 -> 380 Target range: 1681725 -> 1682808 151 : AsnIleGlyLysAsnLysSerGluArgIleLeuProPheLysMetTrpVal<->As : 168 ||||||||||||!:! ! ..!|||||||||||||||||| !.!. ! ||| :! AsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAs 1681726 : AACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAA : 1681780 169 : pPheProLeuSerGluThrProTyrTyrGluIleMetPheValIleGln >>>> : 185 !!!.||| !||| !||||||||||||||||||:::|||||||||:!! nLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681781 : CTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt..... : 1681833 186 : Target Intron 1 >>>> LeuLeuThrValGlnGlnIleGlyIleAlaTyrT : 196 120 bp !|||:!!||| !!!. ||||||..!!:! ++ThrLeuSerValValHisSerGlyIleCysPheC 1681834 : ....................agACATTATCTGTGGTGCATTCGGGAATTTGTTTCT : 1681984 197 : hrCysAsnAspAsnPheLeuCysValLeuAsnMetHisValValCysGlnPheArg : 214 !||| !|||||||||||||||:!!|||!:!|||||||||! ! ! ||||||!:! ysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLys 1681985 : GTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAG : 1682038 215 : IleLeuGlnHisArgLeuThrLysLeuTrpSerIleIleAspGluArgAlaAspLy : 233 |||||||||:!! |||||| !!!:!!:!:..!|||!:::::...|| IleLeuGlnAsn---------LysLeuGlnThrValLeuSerGluLysSerSerLy 1682039 : ATTTTACAAAAC---------AAACTCCAAACAGTATTGAGTGAGAAatcttcgaa : 1682086 234 : sPheAsnTyrAlaSerLysCysTyrGluAlaLeuLysGluCysIleArgGlnHisG : 252 | ... |||.!! |||:!!! !!!!|||||||||:!!!:! ! |||! sGluLysSerAlaGly---LeuTyrLysGluPheLysGluCysValGlnTyrHisH 1682087 : agaaaaatcagctGGA---CTGTATAAAGAGTTCAAGGAGTGCGTACAGTATCATC : 1682140 253 : lnSerLeuIleGluPheCysAspLysLeuGluHisValTyrThrLeuProIlePhe : 270 !.! !|||:!!..!::: :::|||||||||:::|||!:! !:!!|||:!:.!. isLeuLeuLeuSerTyrValGluLysLeuGluTyrValPheCysValProLeuMet 1682141 : ATTTGCTTCTTTCGtacgtggaaaaattggaatacgTATTTTGTGTCCCGTTGATG : 1682194 271 : GlyHisValValValPheSerLeuLeuMetCysPheAspThrTyrGluIlePheLe : 289 !!!.:!!:!!|||! !|||:!!:!!:!!||| !!... !!:!:!!:!!! || IleGlnLeuLeuValSerSerIleValLeuCysValSerGlyPheGlnLeuSerLe 1682195 : ATTCAATTGCTGGTGTCTAGCATAGTTCTGTGCGTCTCGGGGTTTCAACTATCATT : 1682251 290 : u >>>> Target Intron 2 >>>> AlaAsnValProValSerMetArgLe : 298 | 285 bp !.!|||! ! !:!!! !! ||||| u++ ++ValAsnGlyValLeuMetLysArgLe 1682252 : Ggt.........................agGTGAACGGTGTATTGATGAAACGATT : 1682563 299 : uIlePhePhePheHisMetValGlySerPheIleHisIleIlePhePheThrTyrI : 317 |:!:|||.!. !:!!.!.:!!|||.!! ! |||...|||.........||| ! uLeuPheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePheLeuIleThrLeuA 1682564 : GTTGTTCCTAAATTACTTTCTCGGTGGAGTGATacagatatttttaataacccTAA : 1682620 318 : leCysGlyGlyLeuIleGluGluSerSerAsnIleGlyLeuAlaThrTyrSerGly : 335 !|||..!! !:!!!!:|||:!!|||.!! !|||||| !|||! !|||||| !! snCysAsnAspIleMetGluGlnSerGlyAlaIleGlyThrAlaIleTyrSerCys 1682621 : ATTGCAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAGCGATCTACAGTTGT : 1682674 336 : TrpTrpThrValLeuProMetAspGluAlaGlyArgMetLeuArgGluAspValLy : 354 ||| ! ! :::... ..!!!!|||:!!|||:!!! AsnTrpGluArgAsnValTyrAsnHisPhe---TyrGlnPheArgLysAspMetMe 1682675 : AATTGGGAGAGGAAtgtttataatcatttt---taccAGTTCAGAAAGGATATGAT : 1682728 355 : sValMetIleMetLysSerMetArgProCysHisLeuSerAlaGlyGlyPhePheP : 373 !:!!:!:!!::!:::!:!!! |||||||||:!!:!!||||||!.! !||||||| tIleValMetValArgAlaLysArgProCysTyrIleSerAlaAlaLysPhePheP 1682729 : GATTGTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGCAGCGAAATTCTTTC : 1682785 374 : roValSerLeuGluThrSerThr : 380 ||:!!|||||||||:!!! !||| roIleSerLeuGluSerPheThr 1682786 : CAATCTCCCTTGAATCGTTCACG : 1682808 vulgar: AmOr86 150 380 . KQ414915.1 1681725 1682808 + 386 M 17 51 G 0 3 M 17 51 5 0 2 I 0 116 3 0 2 M 34 102 G 3 0 M 17 51 G 1 0 M 50 150 5 0 2 I 0 281 3 0 2 M 56 168 G 1 0 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681726 1682808 386 + . gene_id 4 ; sequence AmOr86 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681726 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681726 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682253 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682253 . + . insertions 0 ; deletions 4 KQ414915.1 exonerate:protein2genome:local splice5 1682254 1682255 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1682254 1682538 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1682537 1682538 . + . intron_id 1 ; splice_site "aG" KQ414915.1 exonerate:protein2genome:local cds 1682539 1682808 . + . KQ414915.1 exonerate:protein2genome:local exon 1682539 1682808 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1681726 1682808 386 + . alignment_id 4 ; Query AmOr86 ; Align 1681726 151 51 ; Align 1681780 168 51 ; Align 1681951 185 102 ; Align 1682053 222 51 ; Align 1682104 240 150 ; Align 1682539 290 168 ; Align 1682707 347 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 371 Query range: 67 -> 223 Target range: 1710869 -> 1712002 68 : IlePheLeuThrCysAsnThrLeuCysIleValLeuThrMetPheLysPheSerIl : 86 :!:||| !! !|||!.! !|||! :!::!!:!! !! .!!|||.!.! !|| LeuPheAspIleCysThrLeuLeuSerValIleMetProAlaIleLysIleIleIl 1710870 : CTGTTCGACATATGCACTCTTCTGTCGGTGATAATGCCCGCTATCAAAATAATCAT : 1710924 87 : eLeuPheIleArgArgThrGluPheLysAsnLeuIleLeuPheAlaArgLysAsnP : 105 ||||||||||!.!!:! !|||||| ..!||||||:!!!:!.!!..!::!.!.| eLeuPheIleAsnLysGluGluPhePheArgLeuIleValTyrThrGluArgGlnP 1710925 : CCTGTTTATCAACAAGGAGGAGTTTTTCCGTTTGATCGTGTACACAGAGCGACAAT : 1710981 106 : heTrpHisLeuAspTyrAspArgHisGluThrIleLeuPheThrLysCysArgLys : 123 || !:!! !||||||:!!..! !!|||! !! :!! ! ! ! |||!:!::: heMetAsnGlyAspTyrAsnGluAspGluArgLysIleValPheAspCysLysArg 1710982 : TCATGAACGGGGATTACAACGAGGACGAGAGGAAGATTGTGTTCGATTGTAAACGC : 1711035 124 : PheCysThrLeuTrpThrLeuThrValPheSerPheThrGlnAlaSerLeuThrPh : 142 .!.||||||!!!!::|||! ! !:!!! ||| ! ||| !:!!!!!:!! !! LeuCysThrPhePheThrCysPheLeuSerSerValThrLeuSerCysValLeuSe 1711036 : CTGTGTACATTCTTCACTTGTTTCCTCTCATCTGTGACTTTATCGTGCGTTCTCTC : 1711092 143 : eTyrIleIleThrProIleCys{A} >>>> Target Intron 1 >>>> {l : 150 !|||:!!:!!|||||||||! !{ } 119 bp { rTyrValValThrProIleTyr{M}++ ++{e 1711093 : TTACGTCGTCACTCCAATTTAC{A}gt.........................ag{T : 1711236 151 : a}AsnIleGlyLysAsnLysSerGluArgIleLeuProPheLysMetTrpValAsp : 168 !}|||||||||!:!|||:!!|||!!:||||||||||||||||||||||||:!!||| t}AsnIleGlyArgAsnGluSerAspArgIleLeuProPheLysMetTrpIleAsp 1711237 : G}AATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTGGATTGAT : 1711289 169 : PheProLeuSerGluThrProTyrTyrGluIleMetPheValIleGln >>>> T : 185 .!.||| !||| !|||||||||:::||||||...|||...:!!||| IleProThrSerMetThrProTyrPheGluIlePhePheThrLeuGln++ 1711290 : ATACCGACATCGATGACACcgtattttgaaatattcttcaccTTACAGgt...... : 1711342 186 : arget Intron 2 >>>> LeuLeuThrValGlnGlnIleGlyIleAlaTyrTh : 196 546 bp :!!|||:!!!.! ! |||||||||:!:::!||| ++ValLeuSerAlaTyrGlnIleGlyValSerTyrGl 1711343 : ...................agGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGG : 1711919 197 : rCysAsnAspAsnPheLeuCysValLeuAsnMetHisValValCysGlnPheArgI : 215 !||| !|||||| !!||||||:!!:!!|||:!:|||:!!!.! !|||||||||| yCysPheAspAsnValLeuCysIleMetAsnLeuHisLeuAlaThrGlnPheArgI 1711920 : TTGCTTCGACAACGTTCTATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAA : 1711976 216 : leLeuGlnHisArgLeuThrLysLeu : 223 |||||||||||||||||..!!!.:!! leLeuGlnHisArgLeuValAsnIle 1711977 : TACTGCAACATAGACTGGTGAATATA : 1712002 vulgar: AmOr86 67 223 . KQ414915.1 1710869 1712002 + 371 M 82 246 S 0 1 5 0 2 I 0 115 3 0 2 S 1 2 M 34 102 5 0 2 I 0 542 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1710870 1712002 371 + . gene_id 5 ; sequence AmOr86 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1710870 1711116 . + . KQ414915.1 exonerate:protein2genome:local exon 1710870 1711116 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711117 1711118 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711117 1711235 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711234 1711235 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711236 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711236 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712002 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712002 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1710870 1712002 371 + . alignment_id 5 ; Query AmOr86 ; Align 1710870 68 246 ; Align 1711238 151 102 ; Align 1711886 185 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 354 Query range: 236 -> 393 Target range: 1707547 -> 1708472 237 : AlaSerLysCysTyrGluAlaLeuLysGluCysIleArgGlnHisGlnSerLeuIl : 255 :!!..!:!!||||||! !!!!|||.!.||||||!:!|||||||||:!!||||| SerAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIl 1707548 : TCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCAT : 1707602 256 : eGluPheCysAspLysLeuGluHisValTyrThrLeuProIlePheGlyHisValV : 274 ||||!:!|||:!!:!!|||:!!.!.|||!:! !||| !:!:.!!!.!!!.|||: eGluTyrCysAsnGluLeuGlnGluValPheGlyLeuPheValLeuAlaGlnValL 1707603 : AGAATACTGTAACGAACTTCAAGAGGTGTTCGGTTTATTTGTGCTTGCACAAGTGT : 1707659 275 : alValPheSerLeuLeuMetCysPheAspThrTyrGluIlePheLeu >>>> Ta : 290 !!:!!||||||||||||||||||.!!||| !||| :!: ! :!! euLeuPheSerLeuLeuMetCysLeuAspGlyTyr---LeuValMet++ 1707660 : TGCTCTTCAGTTTGTTAATGTGCCTCGATGGATAT---TTGGTGATGgt....... : 1707706 291 : rget Intron 1 >>>> AlaAsnValProValSerMetArgLeuIlePhePhe : 301 457 bp ! !:!!..!|||:!!! !..!||||||! !|||!!. ++GluAspThrProIleMetGlnArgLeuThrPheLeu 1707707 : ..................agGAAGATACTCCCATTATGCAGCGCCTTACTTTCTTG : 1708194 302 : PheHisMetValGlySerPheIleHisIleIlePhePheThrTyrIleCysGlyGl : 320 ||||||:!:..!|||!!!.!. !!!.:!::!:.!.|||||||||! !|||! ! ! PheHisLeuThrGlyCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCy 1708195 : TTTCACCTAACGGGATGCCTGTGCCAACTGTTGATGTTCACCTACAGCTGCGATTG : 1708251 321 : yLeuIleGluGluSerSerAsnIleGlyLeuAlaThrTyrSerGlyTrpTrpThrV : 339 !||||||..!||||||! !|||:!:!.! !|||! !|||..! !!! !|||! ! sLeuIleArgGluSerLeuAsnValAlaAsnAlaIleTyrAspCysSerTrpIleH 1708252 : CCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATATACGACTGCTCGTGGATTC : 1708308 340 : alLeuProMetAspGluAlaGlyArgMetLeuArgGluAspValLysValMetIle : 357 !||||||||||||..!:!!|||||||||||||||:!!|||:!!! ! !!:!:||| isLeuProMetAspArgSerGlyArgMetLeuArgLysAspLeuThrPheValIle 1708309 : ACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGACATTCGTCATT : 1708362 358 : MetLysSerMetArgProCysHisLeuSerAlaGlyGlyPhePheProValSerLe : 376 !:!|||! !|||||| !|||!!!||| !!|||||||||||||||||||| GlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePheProValSerLe 1708363 : GGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACT : 1708419 377 : uGluThrSerThrAlaLeuMetSerSerThrLeuSerTyrPheThrLeuMet : 393 |||||||! !|||:!!:!!!!: !||||||!!! ! .!.:!!:!!:!: uGluThrTyrThrSerValIleHisSerThrPheHisThrIleSerMetLeu 1708420 : GGAAACGTACACTTCGGTAATTCATTCAACATTTCACACGATATCGATGTTA : 1708472 vulgar: AmOr86 236 393 . KQ414915.1 1707547 1708472 + 354 M 49 147 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 104 312 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707548 1708472 354 + . gene_id 6 ; sequence AmOr86 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1707548 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707548 1707703 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708472 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708472 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1707548 1708472 354 + . alignment_id 6 ; Query AmOr86 ; Align 1707548 237 147 ; Align 1707695 287 9 ; Align 1708161 290 312 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 341 Query range: 66 -> 232 Target range: 1694003 -> 1695010 67 : CysIlePheLeuThrCysAsnThrLeuCysIleValLeuThrMetPheLysPheSe : 85 ||||||!:!:!! !||||||! !|||! !:!!!.!:!!..!.!.||||||.!! CysIleTyrValGlyCysAsnIleLeuTyrLeuAlaIleValPhePheLysIleLe 1694004 : TGCATTTACGTCGGGTGCAACATTTTATACCTAGCGATCGTTTTCTTCAAGATCCT : 1694058 86 : rIleLeuPheIleArgArgThrGluPheLysAsnLeuIleLeuPheAlaArgLysA : 104 !:!!|||!:!! !.!|||! !|||||| ! ...|||||| !|||.!!!:!:!!! uValLeuTyrLysHisArgIleGluPheTyrGlyLeuIleArgPheThrGlnGluL 1694059 : CGTTTTGTACAAGCACAGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAGAGA : 1694115 105 : snPheTrpHisLeuAspTyrAspArgHisGluThrIleLeuPheThrLysCysArg : 122 !.|||||||||!!!||||||:!! !!..|||! !:!!:!!!!.:!!:!!|||!:! ysPheTrpHisPheAspTyrAsnSerArgGluLysLeuIleLeuSerGluCysLys 1694116 : AATTCTGGCATTTCGACTATAATTCACGGGAGAAGTTAATTTTATCCGAGTGCAAG : 1694169 123 : LysPheCysThrLeuTrpThrLeuThrValPheSerPheThrGlnAlaSer{Le} : 140 |||.!.||||||:!!!:: :!!..!!.!||||||||| ! !.!!{ } LysIleCysThrValPhe---IleValAlaPheSerPheCysThrGlnGly{Th}+ 1694170 : AAGATATGTACCGTTTTC---ATCGTTGCCTTCAGCTTCTGTACTCAGGGC{AC}g : 1694222 141 : >>>> Target Intron 1 >>>> {u}ThrPheTyrIleIleThrProIleC : 149 103 bp {!}!:! !! !! !:!: ! !.!!! + +-{r}SerValAsnCysValPheTyrPheL 1694223 : t.........................at{A}AGTGTCAACTGTGTGTTCTATTTTT : 1694350 150 : ysAlaAsnIleGlyLysAsnLysSerGluArgIleLeuProPheLysMetTrpVal : 167 ||||||:!!|||||||||:!!|||||||||!!:|||||||||!!.||||||||| euAlaAsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTrpVal 1694351 : TAGCAAATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTGGGTT : 1694404 168 : AspPheProLeuSerGluThrProTyrTyrGluIleMetPheValIleGlnLeu{L : 186 ||||||||| !.!! !:!!||||||||||||:!!:!:|||:!!||||||:!!{: AspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGlnVal{I 1694405 : GACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGGTA{A : 1694461 187 : } >>>> Target Intron 2 >>>> {eu}ThrValGlnGlnIleGlyIleA : 194 } 409 bp {!!} !||| ! !!.:!!||||||. }+- +-{le}CysValTyrHisValGlyIleC 1694462 : }gc.........................ac{TT}TGCGTGTACCATGTCGGTATAT : 1694894 195 : laTyrThrCysAsnAspAsnPheLeuCysValLeuAsnMetHisValValCysGln : 212 .!|||! !||| !||||||.!!||| !!:!!||||||:!:||||||!.! !||| ysTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGln 1694895 : GTTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAA : 1694948 213 : PheArgIleLeuGlnHisArgLeuThrLysLeuTrpSerIleIleAspGluArgAl : 231 |||||||||||||||:!!|||!!!! !!!.||| ! !:!:!!|||!!::!!!:!.! PheArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLysGlnTh 1694949 : TTTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAAC : 1695005 232 : aAsp : 232 !||| rAsp 1695006 : AGAC : 1695010 vulgar: AmOr86 66 232 . KQ414915.1 1694003 1695010 + 341 M 62 186 G 1 0 M 10 30 S 0 2 5 0 2 I 0 99 3 0 2 S 1 1 M 45 135 S 0 1 5 0 2 I 0 405 3 0 2 S 1 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694004 1695010 341 + . gene_id 7 ; sequence AmOr86 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694004 1694221 . + . KQ414915.1 exonerate:protein2genome:local exon 1694004 1694221 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1694222 1694223 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694222 1694324 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694323 1694324 . + . intron_id 0 ; splice_site "AT" KQ414915.1 exonerate:protein2genome:local cds 1694325 1694461 . + . KQ414915.1 exonerate:protein2genome:local exon 1694325 1694461 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694462 1694463 . + . intron_id 2 ; splice_site "GC" KQ414915.1 exonerate:protein2genome:local intron 1694462 1694870 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1694869 1694870 . + . intron_id 1 ; splice_site "AC" KQ414915.1 exonerate:protein2genome:local cds 1694871 1695010 . + . KQ414915.1 exonerate:protein2genome:local exon 1694871 1695010 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694004 1695010 341 + . alignment_id 7 ; Query AmOr86 ; Align 1694004 67 186 ; Align 1694190 130 30 ; Align 1694326 141 135 ; Align 1694873 187 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 221 Query range: 150 -> 235 Target range: 1707001 -> 1707529 151 : AsnIleGlyLysAsnLysSerGluArgIleLeuProPheLysMetTrpValAspPh : 169 !::||||||||||||:::|||:!:||||||||| ! !!!!..!.|||:!!||||| SerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAspPh 1707002 : AgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGACTT : 1707056 170 : eProLeuSerGluThrProTyrTyrGluIleMetPheValIleGln >>>> Tar : 185 |||| !!!! !||||||||||||||||||:!:|||..! ||| eProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707057 : TCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt........ : 1707106 186 : get Intron 1 >>>> LeuLeuThrValGlnGlnIleGlyIleAlaTyrThrC : 197 276 bp :!!!!!! !|||..! ! :!! !!|||::!||| !| ++ValPheIleValMetTyrValCysIleSerTyrLeuC 1707107 : .................agGTTTTTATCGTAATGTACGTTTGCATAAGCTACCTTT : 1707416 198 : ysAsnAspAsnPheLeuCysValLeuAsnMetHisValValCysGlnPheArgIle : 215 ||! !|||||||||||||||:!!:!!|||:!:|||..!!.! !|||||||||||| ysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIle 1707417 : GTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATA : 1707470 216 : LeuGlnHisArgLeuThrLysLeuTrpSerIleIleAspGluArgAlaAspLysPh : 234 ||||||:!!||||||:!!!!.:!!!! .!! !:!!||||||:::||||||.. LeuGlnTyrArgLeuSerAsnValCysGly---AlaAsnGluArgSerAspLysIl 1707471 : TTGCAATACAGACTGTCGAATGTGTGCGGT---GCAAACGAACGTAgcgataaaat : 1707524 235 : eAsn : 235 .::: eSer 1707525 : ttcg : 1707529 vulgar: AmOr86 150 235 . KQ414915.1 1707001 1707529 + 221 M 34 102 5 0 2 I 0 272 3 0 2 M 41 123 G 1 0 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707002 1707529 221 + . gene_id 8 ; sequence AmOr86 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1707002 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707002 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707529 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707529 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1707002 1707529 221 + . alignment_id 8 ; Query AmOr86 ; Align 1707002 151 102 ; Align 1707380 185 123 ; Align 1707503 227 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 192 Query range: 277 -> 390 Target range: 1695578 -> 1695920 278 : LeuLeuMetCysPheAspThrTyrGluIlePheLeu<->AlaAsnValProValSe : 295 ||| ::: ::: !!.!|||...||||||:!! .!!:!! !||| !|| Leu***LeuIleTyrProAsnTyrSerIlePheValGlnThrAspSerProProSe 1695579 : ctttaattaatttacccTAATTATTCCATATTTGTACAGACAGACTCACCACCTTC : 1695633 296 : rMetArgLeuIlePhePhePheHisMetValGlySerPheIleHisIleIlePheP : 314 |! !.!:!! !!!. ! .!!:!!:!!!.!|||!!!!!. !!!.:!!.!!.!.| rArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrLeuCysGlnLeuPheMetP 1695634 : GAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTTTGTGTCAACTTTTTATGT : 1695690 315 : heThrTyrIleCysGlyGlyLeuIleGluGluSerSerAsnIleGlyLeuAlaThr : 332 ||||||||! !|||! !||||||! !..!||||||! !:!!:!!.!! !|||..! heThrTyrSerCysAspGlyLeuThrArgGluSerMetAspValSerArgAlaVal 1695691 : TCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATGGACGTTAGCAGAGCTGTA : 1695744 333 : TyrSerGlyTrpTrpThrValLeuProMetAspGluAlaGlyArgMetLeuArgGl : 351 !:!:!! !! !|||.!! !||||||||||||..! !|||!:!! :!!|||:! PheAlaArgProTrpAlaAsnLeuProMetAspArgAsnGlyLysSerValArgGl 1695745 : TTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAATGGGAAAAGTGTGCGACA : 1695801 352 : uAspValLysValMetIleMetLysSerMetArgProCysHisLeuSerAlaGlyG : 370 !..!:!! !:!!:!!||||||!:!|||! ||| !||| !|||!!!|||.!!| nSerMetLeuMetValIleMetArgSerAsnArgCysCysCysLeuThrAlaSerG 1695802 : AAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTTGCTGCTTAACAGCCAGCG : 1695858 371 : lyPhePheProValSerLeuGluThrSerThrAlaLeuMetSerSerThrLeuSer : 388 ||||||||||||||||||||||||||! !|||!.!:!!!!:!:!! ! ! !||| lyPhePheProValSerLeuGluThrTyrThrGlyValIleAsn***AspThrSer 1695859 : GGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGGTAATTAATTAAGATACGTCC : 1695912 389 : TyrPhe : 390 !||| IlePhe 1695913 : ATTTTT : 1695920 vulgar: AmOr86 277 390 . KQ414915.1 1695578 1695920 + 192 M 12 36 G 0 3 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1695579 1695920 192 + . gene_id 9 ; sequence AmOr86 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1695579 1695920 . + . KQ414915.1 exonerate:protein2genome:local exon 1695579 1695920 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1695579 1695920 192 + . alignment_id 9 ; Query AmOr86 ; Align 1695579 278 36 ; Align 1695618 290 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 234 -> 292 Target range: 1699806 -> 1699980 235 : AsnTyrAlaSerLysCysTyrGluAlaLeuLysGluCysIleArgGlnHisGlnSe : 253 ..!!:!|||..!!!.||||||:!!|||!!!|||.!.|||:!!||||||||||||!: ArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHisGlnAs 1699807 : CGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACATCAGAA : 1699861 254 : rLeuIleGluPheCysAspLysLeuGluHisValTyrThrLeuProIlePheGlyH : 272 !! !||| !!:!||| !!!:!|||.!..!.:!!!:!|||:!! !:!!.!!|||| nHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValLeuGlyH 1699862 : TCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTACTCGGAC : 1699918 273 : isValValValPheSerLeuLeuMetCysPheAspThrTyrGluIlePheLeuAla : 290 ||:!!:!!|||||||||||||||!!:|||.!.! ! !!:!:!!:!:.!!:!!! ! isIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeuValGlu 1699919 : ACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTCGTAGAA : 1699972 291 : AsnVal : 292 |||:!! AsnIle 1699973 : AACATC : 1699980 vulgar: AmOr86 234 292 . KQ414915.1 1699806 1699980 + 160 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699807 1699980 160 + . gene_id 10 ; sequence AmOr86 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1699807 1699980 . + . KQ414915.1 exonerate:protein2genome:local exon 1699807 1699980 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699807 1699980 160 + . alignment_id 10 ; Query AmOr86 ; Align 1699807 235 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 231 -> 291 Target range: 1712053 -> 1712233 232 : AspLysPheAsnTyrAlaSerLysCysTyrGluAlaLeuLysGluCysIleArgGl : 250 |||..! .!.!:!|||..!!!.! !|||!!:!.!!!!|||..!|||:!!||||| AspSerThrGluPheAlaAspAsnSerTyrAspValPheLysArgCysValArgGl 1712054 : GATTCGACAGAATTTGCGGATAACTCTTACGACGTTTTCAAAAGATGCGTTCGTCA : 1712108 251 : nHisGlnSerLeuIleGluPheCysAspLysLeuGluHisValTyrThrLeuProI : 269 |||||||||||||!!:! ||||||:::|||||||||...:::!:!!:!:!! !| nHisGlnSerLeuMetAlaPheCysGluLysLeuGluGluMetPheSerMetIleI 1712109 : ACATCAATCTCTGATGGCTTTCTgcgagaaactcgaagaaatgTTCAGTATGATTA : 1712165 270 : lePheGlyHisValValValPheSerLeuLeuMetCysPheAspThrTyrGluIle : 287 ||.!.|||!!.:!!:!!|||||||||:!!!!!||||||.!!|||..!! !:!!:!! leLeuGlyGlnLeuLeuValPheSerIlePheMetCysLeuAspValCysGlnVal 1712166 : TACTGGGGCAATTGTTAGTGTTCAGTATTTTTATGTGTCTCGACGTGTGCCAAGTA : 1712219 288 : PheLeuAlaAsn : 291 .!!|||!.!!:! LeuLeuValSer 1712220 : CTTCTGGTTAGT : 1712233 vulgar: AmOr86 231 291 . KQ414915.1 1712053 1712233 + 158 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712054 1712233 158 + . gene_id 11 ; sequence AmOr86 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1712054 1712233 . + . KQ414915.1 exonerate:protein2genome:local exon 1712054 1712233 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712054 1712233 158 + . alignment_id 11 ; Query AmOr86 ; Align 1712054 232 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 183 -> 255 Target range: 1702013 -> 1702229 184 : GlnLeuLeuThrValGlnGlnIleGlyIleAlaTyrThrCysAsnAspAsnPheLe : 202 |||:!!|||:!!:!! ! !!.:!!|||:!!..!|||! !||| !||||||.!!|| GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 203 : uCysValLeuAsnMetHisValValCysGlnPheArgIleLeuGlnHisArgLeuT : 221 ||||:!!:!!|||:!!|||!.!!.! !||||||||||||||||||:!!||||||: uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 222 : hrLysLeuTrpSerIleIleAspGluArgAlaAspLysPheAsnTyrAlaSerLys : 239 !!!!.||| ! ..!! ! ! :!!!:!!.!||| ! !.!.! !::!:!! erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1702179 240 : CysTyrGluAlaLeuLysGluCysIleArgGlnHisGlnSerLeuIle : 255 ! !... ! !:!!.!.||| !!:! ! !:!!!:!! !:!! LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysVal 1702180 : CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTA : 1702229 vulgar: AmOr86 183 255 . KQ414915.1 1702013 1702229 + 125 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1702229 125 + . gene_id 12 ; sequence AmOr86 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702014 1702229 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702229 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1702229 125 + . alignment_id 12 ; Query AmOr86 ; Align 1702014 184 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 7 -> 63 Target range: 1700467 -> 1700635 8 : AspValSerIleValValSerGlnPheLeuLeuLysLeuThrGlyValTrpMetTh : 26 |||||||||:!: !|||!!! |||! !||||||:!!! !||| !!|||:!:.! AspValSerValSerValThrAlaPheTyrLeuLysIleIleGlyPheTrpLeuAl 1700468 : GACGTATCAGTGAGCGTCACAGCTTTCTACTTGAAAATCATCGGCTTCTGGTTAGC : 1700522 27 : rValAsnAspGlyGluLysArgArgArgArgIleAlaMetAlaTyrThrPheValI : 45 !! !!.! !!! !|||||||||||||||!:!.!!|||..! !! !|||.!.:!!! aAspThrTyrGluGluLysArgArgArgLysPheAlaGlnAsnCysThrIleLeuM 1700523 : TGACACTTACGAGGAGAAACGTCGAAGAAAGTTCGCGCAGAATTGCACGATACTTA : 1700579 46 : leGlnValTyrGlyLeuTyrLeuAsnIleGlyAspIleTyrHisSerTrpAspAsp : 63 !:! :!!! !!.!:!! |||.!.:!: !!||||||||||||! !|||! ||| etLeuMetCysAlaValLeuLeuGluValArgAspIleTyrHisIleTrpGlyAsp 1700580 : TGCTTATGTGCGCTGTGCTGCTTGAGGTGAGGGATATCTATCACATCTGGGGAGAT : 1700633 vulgar: AmOr86 7 63 . KQ414915.1 1700467 1700635 + 119 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1700468 1700635 119 + . gene_id 13 ; sequence AmOr86 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1700468 1700635 . + . KQ414915.1 exonerate:protein2genome:local exon 1700468 1700635 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1700468 1700635 119 + . alignment_id 13 ; Query AmOr86 ; Align 1700468 8 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 7 -> 63 Target range: 1704915 -> 1705083 8 : AspValSerIleValValSerGlnPheLeuLeuLysLeuThrGlyValTrpMetTh : 26 |||||||||:!: !|||!!! |||! !||||||:!!! !||| !!|||:!:.! AspValSerValSerValThrAlaPheTyrLeuLysIleIleGlyPheTrpLeuAl 1704916 : GACGTATCAGTGAGCGTCACAGCTTTCTACTTGAAAATCATCGGCTTCTGGTTAGC : 1704970 27 : rValAsnAspGlyGluLysArgArgArgArgIleAlaMetAlaTyrThrPheValI : 45 !! !!.! !!! !|||||||||||||||!:!.!!|||..! !! !|||.!.:!!! aAspThrTyrGluGluLysArgArgArgLysPheAlaGlnAsnCysThrIleLeuM 1704971 : TGACACTTACGAGGAGAAACGTCGAAGAAAGTTCGCGCAGAATTGCACGATACTTA : 1705027 46 : leGlnValTyrGlyLeuTyrLeuAsnIleGlyAspIleTyrHisSerTrpAspAsp : 63 !:! :!!! !!.!:!! |||.!.:!: !!||||||||||||! !|||! ||| etLeuMetCysAlaValLeuLeuGluValArgAspIleTyrHisIleTrpGlyAsp 1705028 : TGCTTATGTGCGCTGTGCTGCTTGAGGTGAGGGATATCTATCACATCTGGGGAGAT : 1705081 vulgar: AmOr86 7 63 . KQ414915.1 1704915 1705083 + 119 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1704916 1705083 119 + . gene_id 14 ; sequence AmOr86 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1704916 1705083 . + . KQ414915.1 exonerate:protein2genome:local exon 1704916 1705083 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1704916 1705083 119 + . alignment_id 14 ; Query AmOr86 ; Align 1704916 8 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr82 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 568 Query range: 151 -> 397 Target range: 1694361 -> 1696248 152 : GlyAsnAsnGluSerGluArgMetLeuProPheAsnMetTrpIleAsnLeuProLe : 170 |||!!.|||:!!||||||||||||||||||||||||||||||:!!:!!!!!||| GlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTrpValAspPheProTh 1694362 : GGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTGGGTTGACTTTCCTAC : 1694416 171 : uSerLysThrProTyrTyrGluIleMetPheLeuIleGln >>>> Target In : 184 !.!! !:!!||||||||||||:!!:!:|||:!!|||||| 409 rGlyLeuSerProTyrTyrGluValLeuPheIleIleGln++ 1694417 : AGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGgt.............. : 1694460 185 : tron 1 >>>> AlaMetCysValTyrTyrIleGlyValAlaSerPheCysPheA : 198 bp .!!:!:|||||||||:!!:!!|||:!!..!! !.!.||||||| ++ThrLeuCysValTyrHisValGlyIleCysTyrMetCysPheA 1694461 : ...........agACACTTTGCGTGTACCATGTCGGTATATGTTACATGTGCTTCG : 1694909 199 : spAsnIlePheCysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeuGln : 216 ||||||||.!! !!:!!:!! !:!!|||:!!||| !|||||||||||||||||| spAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGlnPheArgIleLeuGln 1694910 : ACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAATTTCGTATCCTTCAA : 1694963 217 : TyrArgLeuThrLysLeuTyrAspVal<-><->GluCysIleGluMetHisLysLy : 233 ||||||!!!! !!!.||| !:!!||| :!! ! !!!: ...::: TyrArgPheMetAsnLeuSerAsnValIleGluLysGlnThrAspGlyArgGluLe 1694964 : TACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAACAGACGGTcgagaatt : 1695020 234 : sAspSerIleLeuAlaAsnArgValProLysPheTyrGluLysPheArgLysCysV : 252 ::: ! !.!!||| !..! ! ! !||| !:!!!!.!:!!..|||| uGluIleGlyTyrThrAsnPheThrValAspSerTyrLeuGlnLeuLysSerCysV 1695021 : ggaaattggtTACACAAATTTCACAGTCGATAGTTACTTACAATTGAAGAGTTGCG : 1695077 253 : alGlnHisHisGlnAlaLeuIleAspPheTyrGlnAsnLeuGluAsnValTyrThr : 270 |||||:!!||||||||||||! !! !!:!! !:!!!!.|||||||||:!!!:!:!! alGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeuGluAsnIlePheSer 1695078 : TGCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTGGAGAACATATTTTCG : 1695131 271 : ArgIleAlaPheGlyGluMetLeuValTyrSerIleLeuIleCysLeuPheGlyTy : 289 !:!!!.!.!!|||:!!:!!||| !! :!!!!::!!:!!|||||| ! ||||| LeuLeuValLeuGlyGlnValLeuPheLeuAlaMetValLeuCysLeuValGlyTy 1695132 : TTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTACTTTGCCTCGTGGGATA : 1695188 290 : rGlnValLeuVal >>>> Target Intron 2 >>>> AlaThrAlaSerPh : 298 ||||:!!!!!:!! 415 bp .!! !:!! !! rGlnLeuPheLeu++ ++ThrAspSerProPr 1695189 : TCAGCTATTTCTGgt.........................agACAGACTCACCACC : 1695630 299 : eAlaArgArgSerIlePheValPheLeuLeuAsnGlySerThrPheLeuLeuPheM : 317 !:!!|||!.! ! !!!.|||.!! !||| |||!!! !! !! !||||||| oSerArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrLeuCysGlnLeuPheM 1695631 : TTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTTTGTGTCAACTTTTTA : 1695687 318 : etValThrTyrSerCysAsnGlyValIleGluHisSerAspAsnValAlaIleGly : 335 || !!||||||||||||:!!|||:!!! !..!.!.||| :!!|||::!! !!.! etPheThrTyrSerCysAspGlyLeuThrArgGluSerMetAspValSerArgAla 1695688 : TGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATGGACGTTAGCAGAGCT : 1695741 336 : AlaTyrSerAlaLeuTrpThrIleValProMetAspLysPheGlyArgMetLeuAr : 354 !.!!:!:!! !! !|||.!!! !:!!|||||||||!:! !|||!:!! :!!|| ValPheAlaArgProTrpAlaAsnLeuProMetAspArgAsnGlyLysSerValAr 1695742 : GTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAATGGGAAAAGTGTGCG : 1695798 355 : gLysAspLeuIleMetValIleThrArgSerArgArgValCysCysLeuThrAlaA : 373 |:!!..!:!!:!!|||||||||! !||||||!.!||| !|||||||||||||||! gGlnSerMetLeuMetValIleMetArgSerAsnArgCysCysCysLeuThrAlaS 1695799 : ACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTTGCTGCTTAACAGCCA : 1695855 374 : snGlyPhePheProValSerLeuGluSerTyrThrLys >>>> Target Intr : 386 :!||||||||||||||||||||||||!!!|||||| ! 319 bp erGlyPhePheProValSerLeuGluThrTyrThrGly++ 1695856 : GCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGgt................ : 1695896 387 : on 3 >>>> IleLeuSerThrAlaLeuSerTyrPheThrLeuLeu : 397 :!!||||||||||||:!!|||||||||||||||||| ++ValLeuSerThrAlaMetSerTyrPheThrLeuLeu 1695897 : .........agGTCCTCAGCACTGCAATGTCATACTTTACACTACTG : 1696248 vulgar: AmOr82 151 397 . KQ414915.1 1694361 1696248 + 568 M 32 96 5 0 2 I 0 405 3 0 2 M 42 126 G 0 6 M 68 204 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694362 1696248 568 + . gene_id 1 ; sequence AmOr82 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694362 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694362 1694457 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 2 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696248 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696248 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694362 1696248 568 + . alignment_id 1 ; Query AmOr82 ; Align 1694362 152 96 ; Align 1694867 184 126 ; Align 1694999 226 204 ; Align 1695618 294 276 ; Align 1696213 386 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr82 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 567 Query range: 151 -> 405 Target range: 1711243 -> 1713339 152 : GlyAsnAsnGluSerGluArgMetLeuProPheAsnMetTrpIleAsnLeuProLe : 170 |||!..|||||||||!!:|||!!:|||||||||!!.|||||||||:!!:!!||| GlyArgAsnGluSerAspArgIleLeuProPheLysMetTrpIleAspIleProTh 1711244 : GGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTGGATTGATATACCGAC : 1711298 171 : uSerLysThrProTyrTyrGluIleMetPheLeuIleGln >>>> Target In : 184 !|||! !|||||||||:::||||||...||| :!!||| 546 rSerMetThrProTyrPheGluIlePhePheThrLeuGln++ 1711299 : ATCGATGACACcgtattttgaaatattcttcaccTTACAGgt.............. : 1711342 185 : tron 1 >>>> AlaMetCysValTyrTyrIleGlyValAlaSerPheCysPheA : 198 bp !.!:!:! !!.!||| ! |||||||||::!! ! !||||||| ++ValLeuSerAlaTyrGlnIleGlyValSerTyrGlyCysPheA 1711343 : ...........agGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGGTTGCTTCG : 1711928 199 : spAsnIlePheCysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeuGln : 216 |||||:!!.!.||||||||| !:!!||||||||| !|||||||||||||||||| spAsnValLeuCysIleMetAsnLeuHisLeuAlaThrGlnPheArgIleLeuGln 1711929 : ACAACGTTCTATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAATACTGCAA : 1711982 217 : TyrArgLeuThrLysLeuTyrAspValGluCysIleGluMetHisLysLys<-><- : 234 :!!||||||..!!!.:!! !!! !:!!:!! !!! !:!!! ! :!!||| HisArgLeuValAsnIleAsnGlyLeuLysSerLysGlnThrProGluLysGlyGl 1711983 : CATAGACTGGTGAATATAAACGGTCTGAAGAGCAAACAGACACCGGAGAAAGGTGA : 1712039 235 : >AspSerIleLeuAlaAsnArg<-><->ValProLysPheTyrGluLysPheArgL : 250 ||||||:!!! !:::! ! !.! !!!.! !|||!!: |||!:!! uThrSerIleIleAspSerThrGluPheAlaAspAsnSerTyrAspValPheLysA 1712040 : AACGTCGATTATAGATTCGACAGAATTTGCGGATAACTCTTACGACGTTTTCAAAA : 1712096 251 : ysCysValGlnHisHisGlnAlaLeuIleAspPheTyrGlnAsnLeuGluAsnVal : 268 :!||||||!::!!.||||||:!!|||!!:! !|||! :::...||||||...::: rgCysValArgGlnHisGlnSerLeuMetAlaPheCysGluLysLeuGluGluMet 1712097 : GATGCGTTCGTCAACATCAATCTCTGATGGCTTTCTgcgagaaactcgaagaaatg : 1712150 269 : TyrThrArgIleAlaPheGlyGluMetLeuValTyrSerIleLeuIleCysLeuPh : 287 !:!!:!! !||| !.!.|||:!!:!!||||||!:!||||||!!!!!:|||||| PheSerMetIleIleLeuGlyGlnLeuLeuValPheSerIlePheMetCysLeuAs 1712151 : TTCAGTATGATTATACTGGGGCAATTGTTAGTGTTCAGTATTTTTATGTGTCTCGA : 1712207 288 : eGlyTyrGlnValLeuVal >>>> Target Intron 2 >>>> AlaThrAl : 296 !! !! !|||||||||:!! 142 bp !! !|| pValCysGlnValLeuLeu++ ++ProGlyAl 1712208 : CGTGTGCCAAGTACTTCTGgt.........................agCCAGGTGC : 1712376 297 : aSerPheAlaArgArgSerIlePheValPheLeuLeuAsnGlySerThrPheLeuL : 315 |||| ! !.!!:!!:!! ||||||...||| ||| |||!!!! !! !! !| aSerValGlyLysGlnMetIlePheThrPheHisLeuAlaGlyCysMetCysGlnL 1712377 : ATCTGTGGGTAAACAGAtgattttcacgtttcacctAGCGGGATGTATGTGTCAAT : 1712433 316 : euPheMetValThrTyrSerCysAsnGlyValIleGluHisSerAspAsnValAla : 333 ||.!.||| !!||||||||||||:!! !!:!!||| !.!.||| ||||||.!! euLeuMetPheThrTyrSerCysAspCysIleIleThrGluSerLeuAsnValThr 1712434 : TGCTGATGTTTACGTACAGCTGCGATTGTATAATAACGGAAAGTTTGAACGTGACG : 1712487 334 : IleGlyAlaTyrSerAlaLeuTrpThrIleValProMetAspLysPheGlyArgMe : 352 !!.!!.!|||..!!.!! !||| !! !:!!||||||..!! ! |||||||| GluAlaValTyrAspGlyProTrpProArgLeuProMetSerThrArgGlyArgMe 1712488 : GAAGCGGTGTACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGAAGAAT : 1712544 353 : tLeuArgLysAspLeuIleMetValIleThrArgSerArgArgValCysCysLeuT : 371 |:!!|||||||||||||||:!:||||||! !||||||||| ! !|||||||||| tIleArgLysAspLeuIleLeuValIleIleArgSerArgValProCysCysLeuT 1712545 : GATAAGGAAGGATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTGCTTGA : 1712601 372 : hrAlaAsnGlyPhePheProValSerLeuGluSerTyrThrLys >>>> Targe : 386 |||||!..||||||||| !:!!|||||||||!!!||||||||| hrAlaArgGlyPhePheValIleSerLeuGluThrTyrThrLys++ 1712602 : CCGCCAGAGGATTCTTCGTAATATCTTTGGAAACGTATACGAAGgt.......... : 1712648 387 : t Intron 3 >>>> IleLeuSerThrAlaLeuSerTyrPheThrLeuLeuSer : 398 634 bp :!!:!!|||||||||:!!||||||||||||||||||!!! ++ValIleSerThrAlaValSerTyrPheThrLeuLeuArg 1712649 : ...............agGTTATAAGTACAGCAGTGTCGTACTTCACACTGTTAAGG : 1713316 399 : AsnArgValGluThrAlaAsn : 405 .!.|||:!!||| !::!||| GlnArgIleGluGluSerAsn 1713317 : CAACGTATAGAGGAAAGCAAT : 1713339 vulgar: AmOr82 151 405 . KQ414915.1 1711243 1713339 + 567 M 32 96 5 0 2 I 0 542 3 0 2 M 50 150 G 0 6 M 7 21 G 0 6 M 53 159 5 0 2 I 0 138 3 0 2 M 92 276 5 0 2 I 0 630 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711244 1713339 567 + . gene_id 2 ; sequence AmOr82 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1711244 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711244 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712227 . + . insertions 12 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712228 1712229 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712228 1712369 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1712368 1712369 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1712370 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712370 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713339 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711244 1713339 567 + . alignment_id 2 ; Query AmOr82 ; Align 1711244 152 96 ; Align 1711886 184 150 ; Align 1712042 234 21 ; Align 1712069 241 159 ; Align 1712370 294 276 ; Align 1713280 386 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr82 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 516 Query range: 151 -> 397 Target range: 1707007 -> 1709231 152 : GlyAsnAsnGluSerGluArgMetLeuProPheAsnMetTrpIleAsnLeuProLe : 170 |||...|||||||||:!:|||!!:||| ! !!|||.!.||||||:!!!!!||| GlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAspPheProTh 1707008 : ggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGACTTTCCGAC : 1707062 171 : uSerLysThrProTyrTyrGluIleMetPheLeuIleGln >>>> Target In : 184 !!!!! !||||||||||||||||||:!:||| ! ||| 276 rThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707063 : AACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt.............. : 1707106 185 : tron 1 >>>> AlaMetCysValTyrTyrIleGlyValAlaSerPheCysPheA : 198 bp !.!.!. !||| |||:!! !!:!!::!! !.!!|||.!!| ++ValPheIleValMetTyrValCysIleSerTyrLeuCysIleA 1707107 : ...........agGTTTTTATCGTAATGTACGTTTGCATAAGCTACCTTTGTATCG : 1707422 199 : spAsnIlePheCysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeuGln : 216 |||||.!!.!.|||!!:!!: !:!!||| !||| !|||||||||||||||||| spAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGln 1707423 : ACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAA : 1707476 217 : TyrArgLeuThrLysLeuTyrAspValGluCysIleGluMetHisLysLysAspSe : 235 |||||||||:!!!!.:!!! !! !!.!.!. !...! ||| ..... TyrArgLeuSerAsnValCysGlyAlaAsn---GluArgSerAspLysIleSerLy 1707477 : TACAGACTGTCGAATGTGTGCGGTGCAAAC---GAACGTAgcgataaaatttcgaa : 1707530 236 : rIleLeuAlaAsnArgValProLysPheTyrGluLysPheArgLysCysValGlnH : 254 . !!::!!.! ! !:!!! !|||! ||||||!:!!!.|||:!!|||! sLysThrProSerAsnSerAspGluCysTyrAlaLysPheLysAsnCysIleGlnG 1707531 : aaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAAC : 1707587 255 : isHisGlnAlaLeuIleAspPheTyrGlnAsnLeuGluAsnValTyrThrArgIle : 272 !.|||||||||||||||!!:!:!! !.!..!.|||:!!.!.|||!:! ! !.!! lnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluValPheGlyLeuPhe 1707588 : AGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGGTGTTCGGTTTATTT : 1707641 273 : AlaPheGlyGluMetLeuValTyrSerIleLeuIleCysLeuPheGlyTyrGlnVa : 291 !.!.!!!.!:!!:!!|||:!!!:!|||:!:|||!!:|||||| !|||||| !|| ValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAspGlyTyrLeuVa 1707642 : GTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGGATATTTGGT : 1707698 292 : lLeu >>>> Target Intron 2 >>>> ValAlaThrAlaSerPheAlaAr : 300 |:!! 457 bp ! !! !||| !!.!! !!: lMet++ ++GluAspThr---ProIleMetGl 1707699 : GATGgt.........................agGAAGATACT---CCCATTATGCA : 1708179 301 : gArgSerIlePheValPheLeuLeuAsnGlySerThrPheLeuLeuPheMetValT : 319 !||| !! !|||:!!|||! !|||!..|||!!! !! !! !|||!!.||| !!| nArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuMetPheT 1708180 : GCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGATGTTCA : 1708236 320 : hrTyrSerCysAsnGlyValIleGluHisSerAspAsnValAlaIleGlyAlaTyr : 337 |||||||||||:!! !!:!!|||..!.!.||| |||||||||! !!.! !||| hrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIleTyr 1708237 : CCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATATAC : 1708290 338 : SerAlaLeuTrpThrIleValProMetAspLysPheGlyArgMetLeuArgLysAs : 356 ..!..!! !|||! ! !:!!|||||||||!:!! !|||||||||||||||||||| AspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAs 1708291 : GACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGA : 1708347 357 : pLeuIleMetValIleThrArgSerArgArgValCysCysLeuThrAlaAsnGlyP : 375 ||||! !.!.|||||| !||||||||| ! !||||||||||||||| !|||| pLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyP 1708348 : TTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGAT : 1708404 376 : hePheProValSerLeuGluSerTyrThrLys >>>> Target Intron 3 > : 386 ||||||||||||||||||||!!!||||||..! 759 bp hePheProValSerLeuGluThrTyrThrSer++ 1708405 : TCTTCCCTGTGTCACTGGAAACGTACACTTCGgt...................... : 1708439 387 : >>> IleLeuSerThrAlaLeuSerTyrPheThrLeuLeu : 397 ||||||||||||||| !|||||||||||||||||| ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeu 1708440 : ...agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTA : 1709231 vulgar: AmOr82 151 397 . KQ414915.1 1707007 1709231 + 516 M 32 96 5 0 2 I 0 272 3 0 2 M 43 129 G 1 0 M 65 195 5 0 2 I 0 453 3 0 2 M 3 9 G 1 0 M 89 267 5 0 2 I 0 755 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707008 1709231 516 + . gene_id 3 ; sequence AmOr82 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1707008 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707008 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709231 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709231 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1707008 1709231 516 + . alignment_id 3 ; Query AmOr82 ; Align 1707008 152 96 ; Align 1707380 184 129 ; Align 1707509 228 195 ; Align 1708161 293 9 ; Align 1708170 297 267 ; Align 1709196 386 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr82 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 422 Query range: 151 -> 400 Target range: 1688062 -> 1690082 152 : GlyAsnAsnGluSerGluArgMetLeuProPheAsnMetTrpIleAsnLeuProLe : 170 .!!...|||:!!|||!!:|||:!:|||||||||!!.||||||:!!:!!! !||||| SerArgAsnLysSerAspArgValLeuProPheLysMetTrpValAspTrpProLe 1688063 : AGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTGGGTCGATTGGCCGCT : 1688117 171 : uSerLysThrProTyrTyrGluIleMetPheLeuIleGln >>>> Target In : 184 |||| ! |||||||||||||||:!:|||||| !.!!||| 160 uSerAspThrProTyrTyrGluLeuMetPheThrPheGln++ 1688118 : ATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAGgt.............. : 1688161 185 : tron 1 >>>> AlaMetCysValTyrTyrIleGlyValAlaSerPheCysPheA : 198 bp !!!:..!:!!||| !!.!||| ! !! ! +-LysIleAlaIleTyrThrGlyAlaValArgValSerAsnArgA 1688162 : ...........acAAAATTGCTATTTACACAGGCGCTGTGCGTGTATCAAATCGGC : 1688361 199 : spAsnIlePheCysIleMetAlaValHisLeu<->AlaGlyGlnPheArgIleLeu : 215 !..!:!!!:! :!! !||| !||| |||! !!!. ||| !||| rgArgLeuTyrLeuLeuArgHisValPheLeuHisAlaGluHisAlaArgAspLeu 1688362 : GCCGCCTATATCTGCTCCGACACGTTTTTCTGCATGCTGAACATGCACGTGATCTG : 1688415 216 : GlnTyrArgLeuThrLysLeuTyrAspValGluCysIleGluMetHisLysLys-A : 234 ! ! !! !! !||||||||| ! !|||||| !:!:! |||::!::!# ProValProTyrThrLysLeuGlnThrValGluHisValAlaGlyHisArgArg#A 1688416 : CCAGTTCCGTATACTAAATTACAGACTGTTGAACATGTGGCCGGTCATCGACGAGC : 1688473 235 : spSerIleLeuAlaAsnArgValProLysPheTyrGluLysPheArgLysCysVal : 252 !!!! !:!!.!!.!. !..! !|||! !||| |||.!.! ! ! |||:!! rgThrAsnMetThrGluTyrThrAsnLysCysTyrThrLysLeuIleAspCysIle 1688474 : GAACGAACATGACCGAATACACGAACAAATGTTACACCAAGCTGATAGATTGCATC : 1688527 253 : GlnHisHisGlnAlaLeuIleAspPheTyrGlnAsnLeuGluAsnValTyrThrAr : 271 :!!:!!||||||:!!||||||!!:|||! ! !!!.|||||||||||||||||| LysAsnHisGlnSerLeuIleGluPheCysValLysLeuGluAsnValTyrThrLe 1688528 : AAAAATCATCAGTCGTTGATCGAGTTCTGCGTGAAACTCGAGAACGTGTACACGTT : 1688584 272 : gIleAlaPheGlyGluMetLeuValTyrSerIleLeuIleCysLeuPheGlyTyrG : 290 !! ! !.!!|||.!.!!::!!|||!:!|||:!:|||!!:|||!!! ! !|||: uThrIleLeuGlyHisIleValValPheSerLeuLeuMetCysPheAspThrTyrG 1688585 : GACTATACTCGGCCACATAGTGGTCTTCAGCTTGTTGATGTGCTTCGACACGTACG : 1688641 291 : lnValLeuVal >>>> Target Intron 2 >>>> AlaThrAlaSerPheA : 299 !!|||:!!:!! 816 bp |||! !!.! !! !. luValValLeu++ ++AlaLysValProThrT 1688642 : AGGTAGTTCTGgt.........................agGCAAAGGTACCTACCA : 1689484 300 : laArgArgSerIlePheValPheLeuLeuAsnGlySerThrPheLeuLeuPheMet : 317 !!! !||| !||||||:!!|||! !:!!! !|||||| !.!!! :::...... hrThrArgLeuIlePheLeuPheHisMetIleGlySerPheIleHisIleIlePhe 1689485 : CGACGCGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCacataattttc : 1689538 318 : ValThrTyrSerCysAsnGlyValIleGluHisSerAspAsnValAlaIleGlyAl : 336 ||||||||||||..!|||:!!||||||.!.||| :!!:!!|||! !!.!.! PheThrTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleAlaThrAlaTh 1689539 : ttcacgtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCAACAGCAAC : 1689595 337 : aTyrSerAlaLeuTrpThrIleValProMetAspLysPheGlyArgMetLeuArgL : 355 !|||:!!!.!:!!||||||:!!:!!||||||:!!||| !!|||!:!|||:!!||| rTyrAlaGlyMetTrpThrValLeuProMetAsnLysValGlyLysMetIleArgG 1689596 : GTATGCAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAATGATACGAG : 1689652 356 : ysAspLeuIleMetValIleThrArgSerArgArgValCysCysLeuThrAlaAsn : 373 !:!!:!!! :!::!!! !..!|||||| !!:! !||||||:!!||||||..! lyAsnMetLysLeuMetThrValArgSerLeuGlnProCysCysIleThrAlaGly 1689653 : GAAATATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAACTGCTGGT : 1689706 374 : GlyPhePheProValSerLeuGluSerTyrThrLys >>>> Target Intron : 386 |||||||||||||||||||||:!!!!! !||| ! 293 bp GlyPhePheProValSerLeuLysThrAlaThrAla++ 1689707 : GGATTCTTTCCTGTCTCCTTGAAAACTGCTACCGCGgt.................. : 1689747 387 : 3 >>>> IleLeuSerThrAlaLeuSerTyrPheThrLeuLeuSerAsnArg : 400 :!!:!!|||:!!.!!:!!|||||||||||||||:!!!!!.!.||| ++LeuMetSerSerThrMetSerTyrPheThrLeuMetArgGluArg 1689748 : .......agCTAATGAGTTCCACAATGTCGTATTTCACGCTCATGAGAGAGAGA : 1690082 vulgar: AmOr82 151 400 . KQ414915.1 1688062 1690082 + 422 M 32 96 5 0 2 I 0 156 3 0 2 M 25 75 G 0 3 M 25 75 F 0 1 M 60 180 5 0 2 I 0 812 3 0 2 M 92 276 5 0 2 I 0 289 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688063 1690082 422 + . gene_id 4 ; sequence AmOr82 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688063 1688158 . + . KQ414915.1 exonerate:protein2genome:local exon 1688063 1688158 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688159 1688160 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688159 1688318 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1688317 1688318 . + . intron_id 0 ; splice_site "AC" KQ414915.1 exonerate:protein2genome:local cds 1688319 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688319 1688652 . + . insertions 3 ; deletions 0 ; frameshifts 1 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690082 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690082 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688063 1690082 422 + . alignment_id 4 ; Query AmOr82 ; Align 1688063 152 96 ; Align 1688319 184 75 ; Align 1688397 209 75 ; Align 1688473 234 180 ; Align 1689469 294 276 ; Align 1690038 386 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr82 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 292 Query range: 151 -> 293 Target range: 1699040 -> 1699971 152 : GlyAsnAsnGluSerGluArgMetLeuProPheAsnMetTrpIleAsnLeuProLe : 170 |||...|||...|||!!:|||:!!||||||||||||||||||:!!:!!|||||||| GlyArgAsnSerSerAspArgValLeuProPheAsnMetTrpValAspLeuProLe 1699041 : ggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTGGGTTGATTTGCCGCT : 1699095 171 : uSerLysThrProTyrTyr{Gl} >>>> Target Intron 1 >>>> {u}I : 178 |||| !:!!||| |||{||} 499 bp {|} uSerValSerProThrTyr{Gl}-- ++{u}A 1699096 : GTCTGTGTCACCAACGTAC{GA}aa.........................ag{A}G : 1699618 179 : leMetPheLeuIleGlnAlaMetCysValTyrTyrIleGlyValAlaSerPheCys : 196 !.!. ! !!! !|||!.!:!!! !:!!|||:!!:!!||||||..!! !.!!||| spPheValPheAlaGlnValLeuSerLeuTyrHisValGlyValCysTyrIleCys 1699619 : ATTTTGTGTTTGCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGC : 1699672 197 : PheAspAsnIlePheCysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLe : 215 |||||||||:!!!!.|||:!:||| !:!!||| !||| !|||||||||||||| PheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLe 1699673 : TTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACT : 1699729 216 : uGlnTyrArgLeuThrLysLeuTyrAspVal<-><->GluCysIleGluMetHisL : 232 |||||||||||||:!!!!.||| !|||..! :!! :!!!!: :!!: uGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnG 1699730 : GCAATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATG : 1699786 233 : ysLysAspSerIleLeuAlaAsnArgValProLysPheTyrGluLysPheArgLys : 250 !!.....!:!! !|||:!!..! !!.! !!!.! !|||:!! !|||!:!!!. luSerSerAlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsn 1699787 : AATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAAT : 1699840 251 : CysValGlnHisHisGlnAlaLeuIleAspPheTyrGlnAsnLeuGluAsnValTy : 269 ||||||!:!!!.|||||| !! !||| !:!! !!!.!..|||.!..!.:!!!: CysValArgGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePh 1699841 : TGCGTACGACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATT : 1699897 270 : rThrArgIleAlaPheGlyGluMetLeuValTyrSerIleLeuIleCysLeuPheG : 288 !||| !|||!.!.!!|||.!.!!:||||||!:!|||:!!|||||||||||| !!| eThrValIleValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValG 1699898 : CACGGTCATTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTG : 1699954 289 : lyTyrGlnValLeuVal : 293 ||!:!|||||||||||| lyPheGlnValLeuVal 1699955 : GATTCCAAGTGCTCGTA : 1699971 vulgar: AmOr82 151 293 . KQ414915.1 1699040 1699971 + 292 M 25 75 S 0 2 5 0 2 I 0 495 3 0 2 S 1 1 M 48 144 G 0 6 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699041 1699971 292 + . gene_id 5 ; sequence AmOr82 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1699041 1699117 . + . KQ414915.1 exonerate:protein2genome:local exon 1699041 1699117 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699118 1699119 . + . intron_id 1 ; splice_site "AA" KQ414915.1 exonerate:protein2genome:local intron 1699118 1699616 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699615 1699616 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699617 1699971 . + . KQ414915.1 exonerate:protein2genome:local exon 1699617 1699971 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699041 1699971 292 + . alignment_id 5 ; Query AmOr82 ; Align 1699041 152 75 ; Align 1699618 178 144 ; Align 1699768 226 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr82 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 247 Query range: 298 -> 392 Target range: 1702974 -> 1703256 299 : AlaArgArgSerIlePheValPheLeuLeuAsnGlySerThrPheLeuLeuPheMe : 317 ||||||||| !! !|||||||||! !:!! !|||||| !! !! !|||!!.:! AlaArgArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLeuLe 1702975 : GCGAGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATTGCT : 1703029 318 : tValThrTyrSerCysAsnGlyValIleGluHisSerAspAsnValAlaIleGlyA : 336 : !!||||||||||||:!!|||:!!||||||.!.||| |||:!!!.!! !!.! uPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaI 1703030 : ATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGA : 1703086 337 : laTyrSerAlaLeuTrpThrIleValProMetAspLysPheGlyArgMetLeuArg : 354 !||| !!.!! !|||! ! !:!!|||||||||||| !||||||! !|||||| leTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArg 1703087 : TATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGA : 1703140 355 : LysAspLeuIleMetValIleThrArgSerArgArgValCysCysLeuThrAlaAs : 373 !:!||||||! !|||||||||..!|||||||||!:! ! !!||||||||||||!: ArgAspLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSe 1703141 : AGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAG : 1703197 374 : nGlyPhePheProValSerLeuGluSerTyrThrLysIleLeuSerThrAlaLeuS : 392 !||||||||||||||||||||||||!!!! !|||! !:!!!!!!:! !:!!!!!| rGlyPhePheProValSerLeuGluThrCysThrThrValPheAsnPheSerPheS 1703198 : CGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATTTCTCATTCT : 1703254 393 : er : 392 || er 1703255 : CT : 1703256 vulgar: AmOr82 298 392 . KQ414915.1 1702974 1703256 + 247 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702975 1703256 247 + . gene_id 6 ; sequence AmOr82 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702975 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1702975 1703256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702975 1703256 247 + . alignment_id 6 ; Query AmOr82 ; Align 1702975 299 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr82 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 235 Query range: 182 -> 293 Target range: 1702013 -> 1702352 183 : GlnAlaMetCysValTyrTyrIleGlyValAlaSerPheCysPheAspAsnIlePh : 201 |||!.!:!!! !:!!|||:!!:!!||||||..!! !.!!||||||||||||:!!!! GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 202 : eCysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeuGlnTyrArgLeuT : 220 .|||:!:||| !:!!||| !||| !|||||||||||||||||||||||||||: uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 221 : hrLysLeuTyrAspVal<-><->GluCysIleGluMetHisLysLysAspSerIle : 236 !!!!.||| !|||..! :!! :!!!!: :!!:!!.....!:!! ! erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1702179 237 : LeuAlaAsnArgValProLysPheTyrGluLysPheArgLysCysValGlnHisHi : 255 |||:!!..! !!.! !!!.! !|||:!! !|||!:!!!.||||||!:!!!.|| LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHi 1702180 : CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACA : 1702236 256 : sGlnAlaLeuIleAspPheTyrGlnAsnLeuGluAsnValTyrThrArgIleAlaP : 274 |||| !! !||| !:!! !!!.!..|||.!..!.:!!!:!||| !|||!.!. sGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValL 1702237 : TCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTAC : 1702293 275 : heGlyGluMetLeuValTyrSerIleLeuIleCysLeuPheGlyTyrGlnValLeu : 292 !!|||.!.!!:||||||!:!|||:!!|||||||||||| !!|||!:!||||||||| euGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeu 1702294 : TCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTC : 1702347 293 : Val : 293 ||| Val 1702348 : GTG : 1702352 vulgar: AmOr82 182 293 . KQ414915.1 1702013 1702352 + 235 M 43 129 G 0 6 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1702352 235 + . gene_id 7 ; sequence AmOr82 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702014 1702352 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702352 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1702352 235 + . alignment_id 7 ; Query AmOr82 ; Align 1702014 183 129 ; Align 1702149 226 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr82 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 179 Query range: 151 -> 219 Target range: 1681731 -> 1682058 152 : GlyAsnAsnGluSerGluArgMetLeuProPheAsnMetTrpIle<->AsnLeuPr : 169 |||!!.!:!!!:..!||||||!!:||||||||| .!. ! :!: |||||||| GlyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAsnLeuPr 1681732 : GGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAACTTGCC : 1681786 170 : oLeuSerLysThrProTyrTyrGluIleMetPheLeuIleGln >>>> Target : 184 | !||| !||||||||||||||||||:::|||:!!|||:!! 1 oThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681787 : TACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt........... : 1681833 185 : Intron 1 >>>> AlaMetCysValTyrTyrIleGlyValAlaSerPheCysP : 197 20 bp .!!:!:! !||| :!! |||:!!..!! !! !|||| ++ThrLeuSerValValHisSerGlyIleCysPheCysCysP 1681834 : ..............agACATTATCTGTGGTGCATTCGGGAATTTGTTTCTGTTGTT : 1681990 198 : heAspAsnIlePheCysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeu : 215 ||||||||.!!.!.||||||:!!::!:!!|||:!!!.!|||||||||!:!|||||| heAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLysIleLeu 1681991 : TCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAGATTTTA : 1682044 216 : GlnTyrArgLeu : 219 ||| !!!:!||| GlnAsnLysLeu 1682045 : CAAAACAAACTC : 1682058 vulgar: AmOr82 151 219 . KQ414915.1 1681731 1682058 + 179 M 15 45 G 0 3 M 17 51 5 0 2 I 0 116 3 0 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681732 1682058 179 + . gene_id 8 ; sequence AmOr82 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681732 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681732 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682058 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682058 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681732 1682058 179 + . alignment_id 8 ; Query AmOr82 ; Align 1681732 152 45 ; Align 1681780 167 51 ; Align 1681951 184 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr82 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 173 Query range: 299 -> 397 Target range: 1682556 -> 1683048 300 : ArgArgSerIlePheValPheLeuLeuAsnGlySerThrPheLeuLeuPheMetVa : 318 !:!|||! !:!:|||:!! !! !!!! !|||.!!..!.!. :::|||::::: LysArgLeuLeuPheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePheLeuIl 1682557 : AAACGATTGTTGTTCCTAAATTACTTTCTCGGTGGAGTGATacagatatttttaat : 1682611 319 : lThrTyrSerCysAsnGlyValIleGluHisSerAspAsnValAlaIleGlyAlaT : 337 :||| !:!||||||! !:!!!!:|||!!.|||! ! !:!!!.!! !!.! !| eThrLeuAsnCysAsnAspIleMetGluGlnSerGlyAlaIleGlyThrAlaIleT 1682612 : aacccTAAATTGCAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAGCGATCT : 1682668 338 : yrSerAlaLeuTrpThrIleValProMetAspLysPheGlyArgMetLeuArgLys : 355 |||||..! !||| !! ::: ||| ..!!!!|||||| yrSerCysAsnTrpGluArgAsnValTyrAsnHisPhe---TyrGlnPheArgLys 1682669 : ACAGTTGTAATTGGGAGAGGAAtgtttataatcatttt---taccAGTTCAGAAAG : 1682719 356 : AspLeuIleMetValIleThrArgSerArgArgValCysCysLeuThrAlaAsnGl : 374 |||:!!!!:!!:|||!!:..!|||:!!!:!||| !|||! !:!!:!!||| AspMetMetIleValMetValArgAlaLysArgProCysTyrIleSerAlaAlaLy 1682720 : GATATGATGATTGTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGCAGCGAA : 1682776 375 : yPhePheProValSerLeuGluSerTyrThrLys >>>> Target Intron 1 : 386 !|||||||||:!!||||||||||||!:!|||||| 201 bp sPhePheProIleSerLeuGluSerPheThrLys++ 1682777 : ATTCTTTCCAATCTCCCTTGAATCGTTCACGAaggt.................... : 1682814 387 : >>>> IleLeuSerThrAlaLeuSerTyrPheThrLeuLeu : 397 :!:||||||.!!.!! !||||||!:!||||||||| ++ValLeuSerAlaThrAlaSerTyrTyrThrLeuLeu 1682815 : .....agGTGTTAAGTGCAACAGCATCTTATTATACACTGCTG : 1683048 vulgar: AmOr82 299 397 . KQ414915.1 1682556 1683048 + 173 M 50 150 G 1 0 M 35 105 5 0 2 I 0 197 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682557 1683048 173 + . gene_id 9 ; sequence AmOr82 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1682557 1682811 . + . KQ414915.1 exonerate:protein2genome:local exon 1682557 1682811 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1682812 1682813 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1682812 1683012 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1683011 1683012 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1683013 1683048 . + . KQ414915.1 exonerate:protein2genome:local exon 1683013 1683048 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1682557 1683048 173 + . alignment_id 9 ; Query AmOr82 ; Align 1682557 300 150 ; Align 1682707 351 105 ; Align 1683013 386 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr82 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 245 -> 298 Target range: 1677746 -> 1677905 246 : GluLysPheArgLysCysValGlnHisHisGlnAlaLeuIleAspPheTyrGlnAs : 264 :::||||||...||||||:!!!::!..||| ! !|||||||||!:! :!!.. GlnLysPheGluLysCysLeuArgArgHisTyrLeuLeuIleAspTyrValGluGl 1677747 : cagaaattcgagaaatgcTTGCGTCGACACTATTTGCTCATTGACTACGTAGAGga : 1677801 265 : nLeuGluAsnValTyrThrArgIleAlaPheGlyGluMetLeuValTyrSerIleL : 283 .|||...|||:::::!! ! !! ! !.!. !:!!|||:!!..!! |||:!:| uLeuAsnAsnLeuPheLysTyrThrLeuLeuLeuGlnMetMetThrSerSerLeuL 1677802 : attgaataatttgttCAAATACACCCTTCTGTTACAGATGATGACCTCGAGTTTGT : 1677858 284 : euIleCysLeuPheGlyTyrGlnValLeuValAlaThrAlaSerPhe : 298 ||||||||:!!! !||||||:!! !||||||!.!!:! !!! !||| euIleCysMetSerGlyTyrGluCysLeuValValSerProPhePhe 1677859 : TAATCTGTATGTCTGGTTACGAATGTTTAGTGGTGAGTCCATTCTtt : 1677905 vulgar: AmOr82 245 298 . KQ414915.1 1677746 1677905 + 114 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1677747 1677905 114 + . gene_id 10 ; sequence AmOr82 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1677747 1677905 . + . KQ414915.1 exonerate:protein2genome:local exon 1677747 1677905 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1677747 1677905 114 + . alignment_id 10 ; Query AmOr82 ; Align 1677747 246 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 1016 Query range: 2 -> 409 Target range: 1704897 -> 1709255 3 : SerAsnLysValGlyGlyAspLeuSerIleThrValMetThrPheTyrMetLysIl : 21 !!!:::||| !..! !!|||:!!|||:!:!:!|||! .!!||||||:!!||||| ThrSerLysLysAsnArgAspValSerValSerValThrAlaPheTyrLeuLysIl 1704898 : ACTTCGAAGAAGAACAGGGACGTATCAGTGAGCGTCACAGCTTTCTACTTGAAAAT : 1704952 22 : eValGlyPheTrpIleAlaSerAsnTyrValGluGluArgArgArgAsnLeuThrI : 40 |:!!|||||||||:!!|||..!!.!|||! !|||:!!|||||||||!!.!!!.!! eIleGlyPheTrpLeuAlaAspThrTyrGluGluLysArgArgArgLysPheAlaG 1704953 : CATCGGCTTCTGGTTAGCTGACACTTACGAGGAGAAACGTCGAAGAAAGTTCGCGC : 1705009 41 : leSerTyrThrPhePheAlaIlePhePheAlaMetAlaThrGluAlaArgAspLeu : 58 !:!! !|||.!..!! !:!!.!.! !|||:!! ! !|||!.!||||||:!! lnAsnCysThrIleLeuMetLeuMetCysAlaValLeuLeuGluValArgAspIle 1705010 : AGAATTGCACGATACTTATGCTTATGTGCGCTGTGCTGCTTGAGGTGAGGGATATC : 1705063 59 : TyrPheSerTrpGlyAsnPheGlyAsp{S} >>>> Target Intron 1 >>> : 68 ||| !! !||||||:!!||||||! {|} 1387 bp TyrHisIleTrpGlyAspPheGlyVal{S}++ 1705064 : TATCACATCTGGGGAGATTTCGGCGTA{A}gt........................ : 1705096 69 : > {er}----IleLeuIleIleCysAsnLeuValThrValIleLeuValLeuPhe : 83 {||}####:!!! !:!!!!:||||||:!!:!!|||||| !:!! !|||||| ++{er}####ValTyrValMetCysAsnIleLeuThrValGlyIleSerLeuPhe 1705097 : .ag{GC}CGTTGTTTACGTAATGTGCAACATTCTAACAGTGGGCATAAGTTTGTTC : 1706529 84 : LysIleSerIleSerLeuMetTyrArgAsnLysLeuHisLysIleIleGlnTyrAl : 102 ||||||! !:!!|||:!!! ! :::...|||... ::::::|||:::||||| LysIleLeuValSerMetArgSerLysGluLysPheLeuGluLeuIleLysTyrAl 1706530 : AAGATCTTGGTCTCGATGAGGagtaaggaaaaatttttggaattaattaaatacgc : 1706586 103 : aLysThrAsnPheTrpAsnLeuLysTyrAspLeuHisAspGluGlnIleIleIleA : 121 |!:!||||||||||||:!!! ! ! |||||| .!.||||||!!:|||:!:| aArgThrAsnPheTrpHisSerAspTyrAsp---SerGlnGluGlnMetIleValA 1706587 : CAGAACGAATTTCTGGCACTCGGATTATGAC---TCGCAGGAGCAAATGATTGTGA : 1706640 122 : snThrCysLysArgTyrSerThrPhePheValCysIlePheThrPhePheSerGln : 139 || !|||||||||! !!!!||||||.!!:!!|||:!:|||!.!||||||:!!.!. snGluCysLysArgSerCysThrPheLeuIleCysValPheAsnPhePheAlaAsn 1706641 : ACGAGTGTAAACGTTCTTGTACATTCCTCATATGCGTGTTTAATTTCTTCGCTAAT : 1706694 140 : GlyThrValPheSerPheValIleArgSerLeuLys{G} >>>> Target Int : 152 |||||||||! !.!!!:!:!!|||||| !!:!! !{|} 266 b GlyThrValSerGlyTyrIleIleArgProIleVal{G}++ 1706695 : GGGACAGTGTCTGGATACATAATCAGGCCAATTGTA{G}gt............... : 1706736 153 : ron 2 >>>> {lu}AsnIleGlyLysAsnGluThrGluArgIleHisProPheA : 166 p {||}!::|||||||||||||||::::!:||||||! ! ! !!| ++{lu}SerIleGlyLysAsnGluSerAspArgIleLeuIleValA 1706737 : ..........ag{AA}AgtattggaaaaaatgaatcagACAGGATACTTATAGTCA : 1707041 167 : snLeuTrpLeuAspGluSerTrpTyrMetThrProTyrPheGluMetValPheIle : 184 ||!!!|||:!!||| !! !||||||||||||!:!|||!!::!!|||! snPheTrpIleAspPheProThrThrMetThrProTyrTyrGluIleLeuPheThr 1707042 : ACTTCTGGATTGACTTTCCGACAACCATGACACCATACTATGAGATATTATTTACG : 1707095 185 : IleGlu >>>> Target Intron 3 >>>> IleLeuSerLeuTyrHisVal : 193 :!! 276 bp :!!!!!! !:!! :!!||| SerGln++ ++ValPheIleValMetTyrVal 1707096 : TCGCAGgt.........................agGTTTTTATCGTAATGTACGTT : 1707398 194 : GlyValCysTyrLeuTyrPheAspAsnPheMetCysIleIleAsnLeuHisIleAl : 212 !!:!! !!||||||! !.!!|||||||||:!!|||!!:||||||||||||! !|| CysIleSerTyrLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAl 1707399 : TGCATAAGCTACCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGC : 1707455 213 : aGlyGlnPheArgIleLeuGlnHisArgPheSerAsnValCysAsnGluMetCysG : 231 | !||||||||||||||||||:!!|||.!.||||||||||||..! .... aThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnValCysGly------AlaA 1707456 : TACTCAATTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGT------GCAA : 1707506 232 : luLysCysCysTyrGlnLeuSerArgLysSerProTyrLeuSerIleCysLysTyr : 249 !.:!! !! ::::::|||:::|||:::|||! ! !||| ! ||| snGluArgSerAspLysIleSerLysLysThrProSerAsnSerAspGluCysTyr 1707507 : ACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTAC : 1707560 250 : AlaLysLeuLysIleTyrIleArgGlnHisGlnThrLeuIleGluTyrCysArgLy : 268 ||||||!!!|||! !! !|||!:!|||||||||.!!|||||||||||||||!.!:! AlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGl 1707561 : GCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGA : 1707617 269 : sLeuGluMetValSerAsnPheIleIlePheGlyGlnValLeuLeuPheSerLeuL : 287 !|||:!! !|||! !..!!!..!!:!:.!!!.!|||||||||||||||||||||| uLeuGlnGluValPheGlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuL 1707618 : ACTTCAAGAGGTGTTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGT : 1707674 288 : euIleCysLeuAspGlyTyrLeuIleLeuMet >>>> Target Intron 4 > : 298 ||!!:||||||||||||||||||:!: ||| 457 bp euMetCysLeuAspGlyTyrLeuVal---Met++ 1707675 : TAATGTGCCTCGATGGATATTTGGTG---ATGgt...................... : 1707706 299 : >>> GluAspThrSerAsnMetSerArgLeuIlePheThrPheHisLeuIleSer : 314 ||||||||| !!! !|||..!||||||! !||| !|||||||||! .!! ++GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGly 1707707 : ...agGAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGA : 1708209 315 : CysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgAspSe : 333 |||:!!|||||||||||||||||||||||||||||||||||||||||||||!!:|| CysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSe 1708210 : TGCCTGTGCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAG : 1708266 334 : rThrAsnIleAlaAsnAlaThrTyrAsnSerLeuTrpSerPheMetProMetAspL : 352 | !|||:!:|||||||||! !|||:!!!!!! !|||! ! !:!!|||||||||! rLeuAsnValAlaAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspA 1708267 : CTTGAACGTGGCCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACA : 1708323 353 : ysTyrGlyLysMetLeuArgLysAspLeuIleLeuValIleMetArgSerLysSer : 370 :!! !|||::!||||||||||||||||||! !!!!|||||| ||||||!:! ! rgSerGlyArgMetLeuArgLysAspLeuThrPheValIleGlyArgSerArgVal 1708324 : GATCTGGGCGAATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTA : 1708377 371 : ProCysTyrLeuThrAlaLeuGlyPhePheProValSerLeuGluThrTyrIleSe : 389 ||||||! !|||||||||! !||||||||||||||||||||||||||||||! !|| ProCysCysLeuThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSe 1708378 : CCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTC : 1708434 390 : r >>>> Target Intron 5 >>>> IleLeuSerThrAlaIleSerTyrPh : 398 | 759 bp ||||||||||||||| |||||||| r++ ++IleLeuSerThrAlaAlaSerTyrPh 1708435 : Ggt.........................agATTTTAAGTACCGCAGCGTCATACTT : 1709220 399 : eThrLeuLeuArgAsnArgAlaGluGlnThrIle : 409 |||||||||||||!!.!:!! !! !:!!! !:!! eThrLeuLeuArgLysGlnGluAlaGluIleVal 1709221 : CACACTGCTACGAAAACAAGAAGCAGAAATAGTT : 1709255 vulgar: AmOr85 2 409 . KQ414915.1 1704897 1709255 + 1016 M 65 195 S 0 1 5 0 2 I 0 1383 3 0 2 S 1 2 F 0 4 M 44 132 G 1 0 M 38 114 S 0 1 5 0 2 I 0 262 3 0 2 S 1 2 M 34 102 5 0 2 I 0 272 3 0 2 M 41 123 G 2 0 M 66 198 G 1 0 M 1 3 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1704898 1709255 1016 + . gene_id 1 ; sequence AmOr85 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1704898 1705093 . + . KQ414915.1 exonerate:protein2genome:local exon 1704898 1705093 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1705094 1705095 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1705094 1706480 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1706479 1706480 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1706481 1706733 . + . KQ414915.1 exonerate:protein2genome:local exon 1706481 1706733 . + . insertions 0 ; deletions 1 ; frameshifts 4 KQ414915.1 exonerate:protein2genome:local splice5 1706734 1706735 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1706734 1706999 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1706998 1706999 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707000 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707000 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 3 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 5 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 5 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 4 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709255 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709255 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1704898 1709255 1016 + . alignment_id 1 ; Query AmOr85 ; Align 1704898 3 195 ; Align 1706487 69 132 ; Align 1706619 114 114 ; Align 1707002 153 102 ; Align 1707380 187 123 ; Align 1707503 230 198 ; Align 1707701 297 3 ; Align 1708161 298 276 ; Align 1709196 390 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 596 Query range: 152 -> 402 Target range: 1694355 -> 1696251 153 : AsnIleGlyLysAsnGluThrGluArgIleHisProPheAsnLeuTrpLeuAspGl : 171 |||:!!|||||||||:!!:!!||||||!!: |||||||||:!!|||:!!||| AsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTrpValAspPh 1694356 : AATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTGGGTTGACTT : 1694410 172 : uSerTrpTyrMetThrProTyrPheGluMetValPheIleIleGlu >>>> Tar : 187 !! :!!:!!||||||!:!|||:!::!!|||||||||:!! eProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGln++ 1694411 : TCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGgt........ : 1694460 188 : get Intron 1 >>>> IleLeuSerLeuTyrHisValGlyValCysTyrLeuT : 199 409 bp ! !|||!!!:!!||||||||||||:!!||||||:!!! ++ThrLeuCysValTyrHisValGlyIleCysTyrMetC 1694461 : .................agACACTTTGCGTGTACCATGTCGGTATATGTTACATGT : 1694903 200 : yrPheAspAsnPheMetCysIleIleAsnLeuHisIleAlaGlyGlnPheArgIle : 217 !|||||||||.!!:!: !!:!!:!:|||||||||:!:||| !|||||||||||| ysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGlnPheArgIle 1694904 : GCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAATTTCGTATC : 1694957 218 : LeuGlnHisArgPheSerAsnValCysAsnGluMetCysGluLysCys<->CysTy : 235 ||||||:!!||||||! !|||:!! !!|||! !!!: :!!:!! !! LeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLysGlnThrAspGlyAr 1694958 : CTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAACAGACGGTcg : 1695014 236 : rGlnLeuSerArgLysSerProTyrLeuSerIleCysLysTyrAlaLysLeuLysI : 254 :::|||... ! ! !! !!!!!!!!:!! !!..||| !:!!||||||! gGluLeuGluIleGlyTyrThrAsnPheThrValAspSerTyrLeuGlnLeuLysS 1695015 : agaattggaaattggtTACACAAATTTCACAGTCGATAGTTACTTACAATTGAAGA : 1695071 255 : leTyrIleArgGlnHisGlnThrLeuIleGluTyrCysArgLysLeuGluMetVal : 272 !! !:!:!:! ! ||||||.!!|||! !! ||||||!:!|||||||||! :!! erCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeuGluAsnIle 1695072 : GTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTGGAGAACATA : 1695125 273 : SerAsnPheIleIlePheGlyGlnValLeuLeuPheSerLeuLeuIleCysLeuAs : 291 ! !:::!!.:!!:!:.!!||||||||||||!!!.!.:!!:!!:!!:!!||||||! PheSerLeuLeuValLeuGlyGlnValLeuPheLeuAlaMetValLeuCysLeuVa 1695126 : TTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTACTTTGCCTCGT : 1695182 292 : pGlyTyrLeuIleLeuMet >>>> Target Intron 2 >>>> GluAspTh : 300 ||||||! !:!!!!!:!! 415 bp !|||:! lGlyTyrGlnLeuPheLeu++ ++ThrAspSe 1695183 : GGGATATCAGCTATTTCTGgt.........................agACAGACTC : 1695624 301 : rSerAsnMetSerArgLeuIlePheThrPheHisLeuIleSerCysMetCysGlnL : 319 ! !! ! !!!!!.!:!! !!!...!.!!:!!||| !.!! !:!!||||||| rProProSerArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrLeuCysGlnL 1695625 : ACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTTTGTGTCAAC : 1695681 320 : euLeuMetPheThrTyrSerCysAspCysLeuIleArgAspSerThrAsnIleAla : 337 ||!!!||||||||||||||||||||| !!|||! !|||!!:|||! !:!!:!!::! euPheMetPheThrTyrSerCysAspGlyLeuThrArgGluSerMetAspValSer 1695682 : TTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATGGACGTTAGC : 1695735 338 : AsnAlaThrTyrAsnSerLeuTrpSerPheMetProMetAspLysTyrGlyLysMe : 356 !..|||..!!:! !!!! !|||:!! !:!!|||||||||!:! !!||||||! ArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAspArgAsnGlyLysSe 1695736 : AGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAATGGGAAAAG : 1695792 357 : tLeuArgLysAspLeuIleLeuValIleMetArgSerLysSerProCysTyrLeuT : 375 :!!|||:!!..!:!!:!!:!!|||||||||||||||!!.!!! !|||! !|||| rValArgGlnSerMetLeuMetValIleMetArgSerAsnArgCysCysCysLeuT 1695793 : TGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTTGCTGCTTAA : 1695849 376 : hrAlaLeuGlyPhePheProValSerLeuGluThrTyrIleSer >>>> Targe : 390 ||||| !||||||||||||||||||||||||||||||! !.!! hrAlaSerGlyPhePheProValSerLeuGluThrTyrThrGly++ 1695850 : CAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGgt.......... : 1695896 391 : t Intron 3 >>>> IleLeuSerThrAlaIleSerTyrPheThrLeuLeuArg : 402 319 bp :!!||||||||||||!!:||||||||||||||||||||| ++ValLeuSerThrAlaMetSerTyrPheThrLeuLeuArg 1695897 : ...............agGTCCTCAGCACTGCAATGTCATACTTTACACTACTGAGA : 1696249 vulgar: AmOr85 152 402 . KQ414915.1 1694355 1696251 + 596 M 34 102 5 0 2 I 0 405 3 0 2 M 47 141 G 0 3 M 64 192 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694356 1696251 596 + . gene_id 2 ; sequence AmOr85 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694356 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694356 1694457 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 2 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696251 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696251 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694356 1696251 596 + . alignment_id 2 ; Query AmOr85 ; Align 1694356 153 102 ; Align 1694867 187 141 ; Align 1695011 234 192 ; Align 1695618 298 276 ; Align 1696213 390 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 469 Query range: 185 -> 403 Target range: 1702013 -> 1703650 186 : GluIleLeuSerLeuTyrHisValGlyValCysTyrLeuTyrPheAspAsnPheMe : 204 :!!:!!||||||||||||||||||||||||||||||:!!! !|||||||||.!!:! GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 205 : tCysIleIleAsnLeuHisIleAlaGlyGlnPheArgIleLeuGlnHisArgPheS : 223 !|||:!:!!:||||||||| ||| !||||||||||||||||||:!!|||!!.| uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 224 : erAsnValCysAsnGluMetCysGluLysCys<->CysTyrGlnLeuSerArgLys : 240 |||||:!! !!:!! !! ! :!!:!! ! !!:!!! !||| ! erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1702179 241 : SerProTyrLeuSerIleCysLysTyrAlaLysLeuLysIleTyrIleArgGlnHi : 259 ! !! !!!!:!! ! ||| ! !!!!|||! !! !:!!|||||||| LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHi 1702180 : CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACA : 1702236 260 : sGlnThrLeuIleGluTyrCysArgLysLeuGluMetValSerAsnPheIleIleP : 278 ||||!.!! !||| !||||||!.!!:!|||.!. :!!! !!.. !!|||:!!. sGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValL 1702237 : TCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTAC : 1702293 279 : heGlyGlnValLeuLeuPheSerLeuLeuIleCysLeuAspGlyTyrLeuIleLeu : 296 !!|||!!.:!!|||:!!|||||||||||||||||||||! !|||!:!! !:!:||| euGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeu 1702294 : TCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTC : 1702347 297 : MetGluAspThrSerAsnMetSerArgLeuIlePheThr{P} >>>> Target : 310 :!!! ! ! ! !.!. ::: ||| {.} 60 ValValArgPheValGluProLeuIleIleLysPheHis{I}++ 1702348 : GTGGTACGTTTCGTTGAACCTttgattattaaatttcat{a}gt............ : 1702392 311 : Intron 1 >>>> {he}HisLeuIleSerCysMetCysGlnLeuLeuMetPheT : 323 7 bp {!!}|||:!!:!!.!! !!:!:||||||||||||:!:|||| +-{le}HisIleValGlySerLeuCysGlnLeuLeuLeuPheT 1702393 : .............at{TT}CACATAGTCGGTAGTCTATGCCAACTATTGCTATTTA : 1703035 324 : hrTyrSerCysAspCysLeuIleArgAspSerThrAsnIleAlaAsnAlaThrTyr : 341 |||||||||||||| !!||||||..!!!:||||||||||||!.!!.!|||! !||| hrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaIleTyr 1703036 : CCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGATATAC : 1703089 342 : AsnSerLeuTrpSerPheMetProMetAspLysTyrGlyLysMetLeuArgLysAs : 360 !.!!! !|||! ! !:!!|||||||||||| !|||!:!! !||||||!:!|| LeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArgArgAs 1703090 : CTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGAAGAGA : 1703146 361 : pLeuIleLeuValIleMetArgSerLysSerProCysTyrLeuThrAlaLeuGlyP : 379 ||||! !:!!||||||:!:||||||!:!!.! !! !!! !||||||||| !|||| pLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSerGlyP 1703147 : CTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAGCGGAT : 1703203 380 : hePheProValSerLeuGluThrTyrIleSer >>>> Target Intron 2 > : 390 |||||||||||||||||||||||! !! !!!! 373 bp hePheProValSerLeuGluThrCysThrThr++ 1703204 : TCTTTCCTGTTTCGCTGGAAACTTGTACCACGgt...................... : 1703238 391 : >>> IleLeuSerThrAlaIleSerTyrPheThrLeuLeuArgAsn : 403 :!:||||||||||||!!:|||||||||||||||||||||:!! ++ValLeuSerThrAlaMetSerTyrPheThrLeuLeuArgHis 1703239 : ...agGTGCTCAGTACAGCGATGTCATACTTCACTTTATTAAGGCAC : 1703650 vulgar: AmOr85 185 403 . KQ414915.1 1702013 1703650 + 469 M 48 144 G 0 3 M 76 228 S 0 1 5 0 2 I 0 603 3 0 2 S 1 2 M 79 237 5 0 2 I 0 369 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1703650 469 + . gene_id 3 ; sequence AmOr85 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702014 1702389 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702389 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1702390 1702391 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1702390 1702996 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702995 1702996 . + . intron_id 0 ; splice_site "AT" KQ414915.1 exonerate:protein2genome:local cds 1702997 1703235 . + . KQ414915.1 exonerate:protein2genome:local exon 1702997 1703235 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1703236 1703237 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1703236 1703608 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1703607 1703608 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1703609 1703650 . + . KQ414915.1 exonerate:protein2genome:local exon 1703609 1703650 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1703650 469 + . alignment_id 3 ; Query AmOr85 ; Align 1702014 186 144 ; Align 1702161 234 228 ; Align 1702999 311 237 ; Align 1703609 390 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 401 Query range: 247 -> 393 Target range: 1712077 -> 1712657 248 : LysTyrAlaLysLeuLysIleTyrIleArgGlnHisGlnThrLeuIleGluTyrCy : 266 ...|||! ! !!!|||! !! !:!!||||||||||||:!!|||!!:! !:!|| SerTyrAspValPheLysArgCysValArgGlnHisGlnSerLeuMetAlaPheCy 1712078 : TCTTACGACGTTTTCAAAAGATGCGTTCGTCAACATCAATCTCTGATGGCTTTCTg : 1712132 267 : sArgLysLeuGluMetValSerAsnPheIleIlePheGlyGlnValLeuLeuPheS : 285 |...||||||||| :::! !!:!.!.||||||.!.||||||:!!|||:!!|||| sGluLysLeuGluGluMetPheSerMetIleIleLeuGlyGlnLeuLeuValPheS 1712133 : cgagaaactcgaagaaatgTTCAGTATGATTATACTGGGGCAATTGTTAGTGTTCA : 1712189 286 : erLeuLeuIleCysLeuAspGlyTyrLeuIleLeuMet >>>> Target Intr : 298 ||:!!!!!!!:|||||||||! !! !! !:!!|||:!! 142 bp erIlePheMetCysLeuAspValCysGlnValLeuLeu++ 1712190 : GTATTTTTATGTGTCTCGACGTGTGCCAAGTACTTCTGgt................ : 1712230 299 : on 1 >>>> GluAspThrSerAsnMetSerArgLeuIlePheThrPheHisLeu : 312 !! !.!!||| !.!!:!:::|||||||||||||||||| ++ProGlyAlaSerValGlyLysGlnMetIlePheThrPheHisLeu 1712231 : .........agCCAGGTGCATCTGTGGGTAAACAGAtgattttcacgtttcacctA : 1712412 313 : IleSerCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleAr : 331 .!!||||||||||||||||||||||||||||||||||||||||||:!!|||! AlaGlyCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleTh 1712413 : GCGGGATGTATGTGTCAATTGCTGATGTTTACGTACAGCTGCGATTGTATAATAAC : 1712469 332 : gAspSerThrAsnIleAlaAsnAlaThrTyrAsnSerLeuTrpSerPheMetProM : 350 !!!:||| !|||:!:.!!.!.|||..!|||:!!.!!! !||| !! !:!!|||| rGluSerLeuAsnValThrGluAlaValTyrAspGlyProTrpProArgLeuProM 1712470 : GGAAAGTTTGAACGTGACGGAAGCGGTGTACGATGGACCATGGCCACGTTTGCCAA : 1712526 351 : etAspLysTyrGlyLysMetLeuArgLysAspLeuIleLeuValIleMetArgSer : 368 ||..!! ! |||!:!|||:!!||||||||||||||||||||||||!!:|||||| etSerThrArgGlyArgMetIleArgLysAspLeuIleLeuValIleIleArgSer 1712527 : TGAGCACGAGAGGAAGAATGATAAGGAAGGATTTGATACTCGTTATCATAAGATCG : 1712580 369 : LysSerProCysTyrLeuThrAlaLeuGlyPhePheProValSerLeuGluThrTy : 387 !:! !||||||! !||||||||| !||||||||| !:!!|||||||||||||| ArgValProCysCysLeuThrAlaArgGlyPhePheValIleSerLeuGluThrTy 1712581 : AGAGTACCTTGTTGCTTGACCGCCAGAGGATTCTTCGTAATATCTTTGGAAACGTA : 1712637 388 : rIleSerIleLeuSerThr : 393 |! !.!:!!:!!..!:!! rThrLysValIleAspSer 1712638 : TACGAAGGTAATTGACTCT : 1712657 vulgar: AmOr85 247 393 . KQ414915.1 1712077 1712657 + 401 M 50 150 5 0 2 I 0 138 3 0 2 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712078 1712657 401 + . gene_id 4 ; sequence AmOr85 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1712078 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1712078 1712227 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712228 1712229 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712228 1712369 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1712368 1712369 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1712370 1712657 . + . KQ414915.1 exonerate:protein2genome:local exon 1712370 1712657 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712078 1712657 401 + . alignment_id 4 ; Query AmOr85 ; Align 1712078 248 150 ; Align 1712370 298 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 367 Query range: 248 -> 407 Target range: 1688505 -> 1690091 249 : TyrAlaLysLeuLysIleTyrIleArgGlnHisGlnThrLeuIleGluTyrCysAr : 267 |||.!!||||||! ! !! !|||!:!.!.||||||:!!|||||||||!:!||| TyrThrLysLeuIleAspCysIleLysAsnHisGlnSerLeuIleGluPheCysVa 1688506 : TACACCAAGCTGATAGATTGCATCAAAAATCATCAGTCGTTGATCGAGTTCTGCGT : 1688560 268 : gLysLeuGluMetValSerAsnPheIleIlePheGlyGlnValLeuLeuPheSerL : 286 !|||||||||! |||! !!..!!.! !|||.!!|||!!.:!!:!!:!!||||||| lLysLeuGluAsnValTyrThrLeuThrIleLeuGlyHisIleValValPheSerL 1688561 : GAAACTCGAGAACGTGTACACGTTGACTATACTCGGCCACATAGTGGTCTTCAGCT : 1688617 287 : euLeuIleCysLeuAspGlyTyrLeuIleLeuMet >>>> Target Intron : 298 |||||!!:|||!!!||| !||| !:!!:!!:!! 816 bp euLeuMetCysPheAspThrTyrGluValValLeu++ 1688618 : TGTTGATGTGCTTCGACACGTACGAGGTAGTTCTGgt................... : 1688655 299 : 1 >>>> GluAspThrSerAsnMetSerArgLeuIlePheThrPheHisLeuIle : 313 ! ! ! ..! !!!.!! !!!!|||||||||||| !||||||:!!||| ++AlaLysValProThrThrThrArgLeuIlePheLeuPheHisMetIle 1688656 : ......agGCAAAGGTACCTACCACGACGCGCCTCATATTCTTATTCCACATGATC : 1689514 314 : SerCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgAs : 332 .!! !!.!. !!..::::::...|||||||||||||||! ! !!||||||..!!! GlySerPheIleHisIleIlePhePheThrTyrSerCysGlyGlyLeuIleGluGl 1689515 : GGTAGCTTCATCCacataattttcttcacgtACAGTTGTGGTGGTTTGATAGAAGA : 1689571 333 : pSerThrAsnIleAlaAsnAlaThrTyrAsnSerLeuTrpSerPheMetProMetA : 351 :|||! !:!!||||||!..||||||||| .!!:!!|||!!! !!:!!||||||: uSerMetAspIleAlaThrAlaThrTyrAlaGlyMetTrpThrValLeuProMetA 1689572 : GAGTATGGATATTGCAACAGCAACGTATGCAGGAATGTGGACGGTTTTGCCAATGA : 1689628 352 : spLysTyrGlyLysMetLeuArgLysAspLeuIleLeuValIleMetArgSerLys : 369 !!||| !|||||||||:!!||| !:!!:!!! |||:!!! !:!:|||||| ! snLysValGlyLysMetIleArgGlyAsnMetLysLeuMetThrValArgSerLeu 1689629 : ATAAAGTTGGCAAAATGATACGAGGAAATATGAAGTTAATGACCGTAAGGTCGTTG : 1689682 370 : SerProCysTyrLeuThrAlaLeuGlyPhePheProValSerLeuGluThrTyrIl : 388 ..!||||||! !:!!|||||| !|||||||||||||||||||||:!!||| !! GlnProCysCysIleThrAlaGlyGlyPhePheProValSerLeuLysThrAlaTh 1689683 : CAACCGTGTTGCATAACTGCTGGTGGATTCTTTCCTGTCTCCTTGAAAACTGCTAC : 1689739 389 : eSer >>>> Target Intron 2 >>>> IleLeuSerThrAlaIleSerTy : 397 !:!! 293 bp :!!:!!|||:!!.!!!!:||||| rAla++ ++LeuMetSerSerThrMetSerTy 1689740 : CGCGgt.........................agCTAATGAGTTCCACAATGTCGTA : 1690059 398 : rPheThrLeuLeuArgAsnArgAlaGluGln : 407 ||||||||||:!!|||.!.|||:!!! :!! rPheThrLeuMetArgGluArgSerAlaGlu 1690060 : TTTCACGCTCATGAGAGAGAGATCGGCTGAA : 1690091 vulgar: AmOr85 248 407 . KQ414915.1 1688505 1690091 + 367 M 49 147 5 0 2 I 0 812 3 0 2 M 92 276 5 0 2 I 0 289 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688506 1690091 367 + . gene_id 5 ; sequence AmOr85 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688506 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688506 1688652 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690091 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690091 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688506 1690091 367 + . alignment_id 5 ; Query AmOr85 ; Align 1688506 249 147 ; Align 1689469 298 276 ; Align 1690038 390 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 244 Query range: 185 -> 299 Target range: 1699632 -> 1699977 186 : GluIleLeuSerLeuTyrHisValGlyValCysTyrLeuTyrPheAspAsnPheMe : 204 :!!:!!||||||||||||||||||||||||||||||:!!! !|||||||||.!!:! GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1699633 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1699687 205 : tCysIleIleAsnLeuHisIleAlaGlyGlnPheArgIleLeuGlnHisArgPheS : 223 !|||:!:!!:||||||||| ||| !||||||||||||||||||:!!|||!!.| uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1699688 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1699744 224 : erAsnValCysAsnGluMetCysGluLysCys<->CysTyrGlnLeuSerArgLys : 240 |||||:!! !!:!! !! ! :!!:!! ! !!:!!! !||| ! erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1699745 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1699798 241 : SerProTyrLeuSerIleCysLysTyrAlaLysLeuLysIleTyrIleArgGlnHi : 259 ! !! !!!!:!! ! ||| ! !!!!|||! !! !:!!|||||||| LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHi 1699799 : CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACA : 1699855 260 : sGlnThrLeuIleGluTyrCysArgLysLeuGluMetValSerAsnPheIleIleP : 278 ||||!.!! !||| !||||||!.!!:!|||.!. :!!! !!.. !!|||:!!. sGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValL 1699856 : TCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTAC : 1699912 279 : heGlyGlnValLeuLeuPheSerLeuLeuIleCysLeuAspGlyTyrLeuIleLeu : 296 !!|||!!.:!!|||:!!|||||||||||||||||||||! !|||!:!! !:!:||| euGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeu 1699913 : TCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTC : 1699966 297 : MetGluAsp : 299 :!:|||:!! ValGluAsn 1699967 : GTAGAAAAC : 1699977 vulgar: AmOr85 185 299 . KQ414915.1 1699632 1699977 + 244 M 48 144 G 0 3 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699633 1699977 244 + . gene_id 6 ; sequence AmOr85 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1699633 1699977 . + . KQ414915.1 exonerate:protein2genome:local exon 1699633 1699977 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699633 1699977 244 + . alignment_id 6 ; Query AmOr85 ; Align 1699633 186 144 ; Align 1699780 234 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 173 Query range: 302 -> 402 Target range: 1682553 -> 1683051 303 : MetSerArgLeuIlePheThrPheHisLeuIleSerCysMetCysGlnLeuLeuMe : 321 |||!.!||||||:!:||| ! !:!!!!!:!!.!! ! :!! |||:::...:: MetLysArgLeuLeuPheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePheLe 1682554 : ATGAAACGATTGTTGTTCCTAAATTACTTTCTCGGTGGAGTGATacagatattttt : 1682608 322 : tPheThrTyrSerCysAspCysLeuIleArgAspSerThrAsnIleAlaAsnAlaT : 340 :...||| !:!|||:!! !:!!!!:..!.!.||| ! !|||!.!!..|||! uIleThrLeuAsnCysAsnAspIleMetGluGlnSerGlyAlaIleGlyThrAlaI 1682609 : aataacccTAAATTGCAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAGCGA : 1682665 341 : hrTyrAsnSerLeuTrpSerPheMetProMetAspLysTyrGlyLysMetLeuArg : 358 !|||!:!!!! !|||..! ! ::: ::: ..!!!!||| leTyrSerCysAsnTrpGluArgAsnValTyrAsnHisPhe---TyrGlnPheArg 1682666 : TCTACAGTTGTAATTGGGAGAGGAAtgtttataatcatttt---taccAGTTCAGA : 1682716 359 : LysAspLeuIleLeuValIleMetArgSerLysSerProCysTyrLeuThrAlaLe : 377 ||||||:!!!!::!!|||!!::!:|||:!!||| !!|||||||||:!!:!!||| LysAspMetMetIleValMetValArgAlaLysArgProCysTyrIleSerAlaAl 1682717 : AAGGATATGATGATTGTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGCAGC : 1682773 378 : uGlyPhePheProValSerLeuGluThrTyrIleSer >>>> Target Intro : 390 ! !|||||||||:!!|||||||||:!!!:!! !.. 201 bp aLysPhePheProIleSerLeuGluSerPheThrLys++ 1682774 : GAAATTCTTTCCAATCTCCCTTGAATCGTTCACGAaggt................. : 1682814 391 : n 1 >>>> IleLeuSerThrAlaIleSerTyrPheThrLeuLeuArg : 402 :!:||||||.!!.!! !||||||!:!|||||||||||| ++ValLeuSerAlaThrAlaSerTyrTyrThrLeuLeuArg 1682815 : ........agGTGTTAAGTGCAACAGCATCTTATTATACACTGCTGCGT : 1683051 vulgar: AmOr85 302 402 . KQ414915.1 1682553 1683051 + 173 M 51 153 G 1 0 M 35 105 5 0 2 I 0 197 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682554 1683051 173 + . gene_id 7 ; sequence AmOr85 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1682554 1682811 . + . KQ414915.1 exonerate:protein2genome:local exon 1682554 1682811 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1682812 1682813 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1682812 1683012 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1683011 1683012 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1683013 1683051 . + . KQ414915.1 exonerate:protein2genome:local exon 1683013 1683051 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1682554 1683051 173 + . alignment_id 7 ; Query AmOr85 ; Align 1682554 303 153 ; Align 1682707 355 105 ; Align 1683013 390 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 2 -> 72 Target range: 1700449 -> 1700659 3 : SerAsnLysValGlyGlyAspLeuSerIleThrValMetThrPheTyrMetLysIl : 21 !!!:::||| !..! !!|||:!!|||:!:!:!|||! .!!||||||:!!||||| ThrSerLysLysAsnArgAspValSerValSerValThrAlaPheTyrLeuLysIl 1700450 : ACTTCGAAGAAGAACAGGGACGTATCAGTGAGCGTCACAGCTTTCTACTTGAAAAT : 1700504 22 : eValGlyPheTrpIleAlaSerAsnTyrValGluGluArgArgArgAsnLeuThrI : 40 |:!!|||||||||:!!|||..!!.!|||! !|||:!!|||||||||!!.!!!.!! eIleGlyPheTrpLeuAlaAspThrTyrGluGluLysArgArgArgLysPheAlaG 1700505 : CATCGGCTTCTGGTTAGCTGACACTTACGAGGAGAAACGTCGAAGAAAGTTCGCGC : 1700561 41 : leSerTyrThrPhePheAlaIlePhePheAlaMetAlaThrGluAlaArgAspLeu : 58 !:!! !|||.!..!! !:!!.!.! !|||:!! ! !|||!.!||||||:!! lnAsnCysThrIleLeuMetLeuMetCysAlaValLeuLeuGluValArgAspIle 1700562 : AGAATTGCACGATACTTATGCTTATGTGCGCTGTGCTGCTTGAGGTGAGGGATATC : 1700615 59 : TyrPheSerTrpGlyAsnPheGlyAspSerIleLeuIleIle : 72 ||| !! !||||||:!!||||||! |||! !:!! !||| TyrHisIleTrpGlyAspPheGlyValSerThrValSerIle 1700616 : TATCACATCTGGGGAGATTTCGGCGTAAGTACAGTTTCAATT : 1700659 vulgar: AmOr85 2 72 . KQ414915.1 1700449 1700659 + 161 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1700450 1700659 161 + . gene_id 8 ; sequence AmOr85 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1700450 1700659 . + . KQ414915.1 exonerate:protein2genome:local exon 1700450 1700659 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1700450 1700659 161 + . alignment_id 8 ; Query AmOr85 ; Align 1700450 3 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 8 -> 64 Target range: 1692094 -> 1692262 9 : AspLeuSerIleThrValMetThrPheTyrMetLysIleValGlyPheTrpIleAl : 27 |||:!!||||||..! ! ! !|||! |||||||||||||||.!.|||:!!|| AspIleSerIleValTrpSerPhePheLeuMetLysIleValGlyLeuTrpLeuAl 1692095 : GATATCTCGATCGTTTGGTCGTTCTTTTTGATGAAAATCGTAGGTCTGTGGCTAGC : 1692149 28 : aSerAsnTyrValGluGluArgArgArgAsnLeuThrIleSerTyrThrPhePheA : 46 |:!!:!! ! !.!|||:!!||||||||||||!!!.!!:!:! !||||||.!. !| aAlaAspGluAlaGluGlnArgArgArgAsnPheAlaLeuIleTyrThrLeuAsnA 1692150 : CGCCGACGAGGCTGAACAACGTCGGAGAAATTTCGCGCTGATTTACACGCTGAACG : 1692206 47 : laIlePhePheAlaMetAlaThrGluAlaArgAspLeuTyrPheSerTrpGlyAsn : 64 ||||||||.!!||| !..!! !! ! !||||||:!!|||!:!|||||||||||| laIlePheIleAlaSerCysIleAlaMetArgAspIleTyrTyrSerTrpGlyAsn 1692207 : CGATTTTTATCGCTTCGTGTATAGCAATGAGAGATATATACTATTCCTGGGGAAAC : 1692260 vulgar: AmOr85 8 64 . KQ414915.1 1692094 1692262 + 157 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1692095 1692262 157 + . gene_id 9 ; sequence AmOr85 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1692095 1692262 . + . KQ414915.1 exonerate:protein2genome:local exon 1692095 1692262 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1692095 1692262 157 + . alignment_id 9 ; Query AmOr85 ; Align 1692095 9 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 182 -> 232 Target range: 1681938 -> 1682088 183 : PheIleIleGluIleLeuSerLeuTyrHisValGlyValCysTyrLeuTyrPheAs : 201 ||| !:!::!!! !||||||:!! ||| !|||:!!|||!:!! !! !||||| PheThrLeuGlnThrLeuSerValValHisSerGlyIleCysPheCysCysPheAs 1681939 : ttcaCTTTGCAGACATTATCTGTGGTGCATTCGGGAATTTGTTTCTGTTGTTTCGA : 1681993 202 : pAsnPheMetCysIleIleAsnLeuHisIleAlaGlyGlnPheArgIleLeuGlnH : 220 |||||||:!!||||||:!:!:!:!!|||:!!!.!|||||||||!:!|||||||||: pAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLysIleLeuGlnA 1681994 : CAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAGATTTTACAAA : 1682050 221 : isArgPheSerAsnValCysAsnGluMetCysGluLys : 232 !!!:!.!!..!!..|||! !:!|||! ...||| snLysLeuGlnThrValLeuSerGluLysSerSerLys 1682051 : ACAAACTCCAAACAGTATTGAGTGAGAAatcttcgaaa : 1682088 vulgar: AmOr85 182 232 . KQ414915.1 1681938 1682088 + 142 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681939 1682088 142 + . gene_id 10 ; sequence AmOr85 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1681939 1682088 . + . KQ414915.1 exonerate:protein2genome:local exon 1681939 1682088 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681939 1682088 142 + . alignment_id 10 ; Query AmOr85 ; Align 1681939 183 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 185 -> 225 Target range: 1711882 -> 1712002 186 : GluIleLeuSerLeuTyrHisValGlyValCysTyrLeuTyrPheAspAsnPheMe : 204 :!!:!!|||||| !|||!!.:!!|||||| !!||| !! !||||||||| !!:! GlnValLeuSerAlaTyrGlnIleGlyValSerTyrGlyCysPheAspAsnValLe 1711883 : CAGGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGGTTGCTTCGACAACGTTCT : 1711937 205 : tCysIleIleAsnLeuHisIleAlaGlyGlnPheArgIleLeuGlnHisArgPheS : 223 :||||||!!:|||||||||:!:||| !||||||||||||||||||||||||.!. uCysIleMetAsnLeuHisLeuAlaThrGlnPheArgIleLeuGlnHisArgLeuV 1711938 : ATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAATACTGCAACATAGACTGG : 1711994 224 : erAsnVal : 225 !|||:!! alAsnIle 1711995 : TGAATATA : 1712002 vulgar: AmOr85 185 225 . KQ414915.1 1711882 1712002 + 136 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711883 1712002 136 + . gene_id 11 ; sequence AmOr85 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1711883 1712002 . + . KQ414915.1 exonerate:protein2genome:local exon 1711883 1712002 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711883 1712002 136 + . alignment_id 11 ; Query AmOr85 ; Align 1711883 186 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 152 -> 187 Target range: 1711237 -> 1711342 153 : AsnIleGlyLysAsnGluThrGluArgIleHisProPheAsnLeuTrpLeuAspGl : 171 |||||||||!:!||||||:!!!!:||||||! ||||||!!.:!!|||:!!||| AsnIleGlyArgAsnGluSerAspArgIleLeuProPheLysMetTrpIleAspIl 1711238 : AATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTGGATTGATAT : 1711292 172 : uSerTrpTyrMetThrProTyrPheGluMetValPheIleIleGluIle : 187 ! !! ! ||||||||||||||||||::: ||| :!!:!!:!! eProThrSerMetThrProTyrPheGluIlePhePheThrLeuGlnVal 1711293 : ACCGACATCGATGACACcgtattttgaaatattcttcaccTTACAGGTA : 1711342 vulgar: AmOr85 152 187 . KQ414915.1 1711237 1711342 + 111 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711238 1711342 111 + . gene_id 12 ; sequence AmOr85 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1711238 1711342 . + . KQ414915.1 exonerate:protein2genome:local exon 1711238 1711342 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711238 1711342 111 + . alignment_id 12 ; Query AmOr85 ; Align 1711238 153 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 8 -> 71 Target range: 1685772 -> 1685961 9 : AspLeuSerIleThrValMetThrPheTyrMetLysIleValGlyPheTrpIleAl : 27 |||:!!|||:!!! ||| :::|||:::||||||.!!|||!!::! AspIleSerLeuLysCysGlyIlePheLeuLeuLysLeuValGlyLeuTrpMetSe 1685773 : GATATTTCCCTCAAgtgtggaatttttcttttgaaattagtCGGCCTCTGGATGTC : 1685827 28 : aSerAsnTyrValGluGluArgArgArgAsnLeuThrIleSerTyrThrPhePheA : 46 !! !||| !||||||||||||||||||!..!!!|||:!:! ! :!! !!|||| rMetAsnSerValGluGluArgArgArgArgPheThrLeuPheGlySerValPheA 1685828 : CATGAACAGCGTCGAGGAGCGTCGAAGGAGGTTCACGTTGTTCGGATCAGTTTTCG : 1685884 47 : laIlePhePheAlaMetAlaThrGluAlaArgAspLeuTyrPheSerTrpGlyAsn : 64 ||:!!! !!:!!.!:!: !..!.!.!.!!.!|||:!! ! !|||!::! !:!! laLeuSerTyrGlyValTyrValAsnValAsnAspIleLeuHisSerPheAspAsp 1685885 : CCCTTTCTTACGGCGTTTACGTGAACGTAAACGATATTCTTCACAGCTTCGATGAT : 1685938 65 : PheGlyAspSerIleLeuIle : 71 .!..!!! |||!!: !||| LeuSerValSerMetArgIle 1685939 : CTGAGCGTGAGTATGAGAATT : 1685961 vulgar: AmOr85 8 71 . KQ414915.1 1685772 1685961 + 106 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1685773 1685961 106 + . gene_id 13 ; sequence AmOr85 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1685773 1685961 . + . KQ414915.1 exonerate:protein2genome:local exon 1685773 1685961 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1685773 1685961 106 + . alignment_id 13 ; Query AmOr85 ; Align 1685773 9 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr80 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 588 Query range: 147 -> 398 Target range: 1694346 -> 1696248 148 : PheIleAlaGlnSerGlySerAsnGluSerGluArgMetLeuProPheAsnMetTr : 166 |||:!!|||.!. !|||!.!|||:!!||||||||||||||||||||||||||||| PheLeuAlaAsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTr 1694347 : TTTTTAGCAAATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTG : 1694401 167 : pIleAsnLeuProIleSerArgThrProTyrTyrGlnIleThrPheLeuIleGln : 185 |:!!:!!!!!|||! !.!! !:!!|||||||||:!!:!! !|||:!!|||||| pValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGln+ 1694402 : GGTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGg : 1694458 186 : >>>> Target Intron 1 >>>> AlaThrCysValTyrTyrValGlyIleS : 194 409 bp .!! !|||||||||:!!|||||||||! + ++ThrLeuCysValTyrHisValGlyIleC 1694459 : t.........................agACACTTTGCGTGTACCATGTCGGTATAT : 1694894 195 : erTyrPheCysPheAspAsnIlePheCysIleMetAlaValHisLeuAlaGlyGln : 212 !!|||.!.|||||||||||||||.!! !!:!!:!! !:!!|||:!!||| !||| ysTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGln 1694895 : GTTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAA : 1694948 213 : PheArgIleLeuArgTyrArgPheThrLysLeuCysAspMetGluTyrGlyIleLy : 231 ||||||||||||!:!|||||||||! !!!.||| !!:!!:!: ! ! !! PheArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLysGlnTh 1694949 : TTTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAAC : 1695005 232 : sGluAsnSerGlnSerIleLeuSerLysGlnMetHisLysPhe<-><->TyrGluL : 248 !!!:..! ::: :::... ! !! !! ! !! ||| !: rAspGlyArgGluLeuGluIleGlyTyrThrAsnPheThrValAspSerTyrLeuG 1695006 : AGACGGTcgagaattggaaattggtTACACAAATTTCACAGTCGATAGTTACTTAC : 1695062 249 : ysPheArgLysCysValGlnHisHisGlnAlaLeuIleAspPheTyrGlnAsnLeu : 266 !!!!.!:!!..|||||||||:!!||||||||||||! !! !!:!! !:!!!!.||| lnLeuLysSerCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeu 1695063 : AATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTG : 1695116 267 : GluAsnValTyrThrMetIleThrPheGlyGlnValLeuValPheSerValLeuIl : 285 ||||||:!!!:!:!!:!!:!!..!.!!|||||||||||| !!.!.:!!:!!:!!:! GluAsnIlePheSerLeuLeuValLeuGlyGlnValLeuPheLeuAlaMetValLe 1695117 : GAGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTACT : 1695173 286 : eCysLeuPheGlyTyrGlnValLeuVal >>>> Target Intron 2 >>>> : 295 !|||||| ! |||||||||:!!!!!:!! 415 bp uCysLeuValGlyTyrGlnLeuPheLeu++ + 1695174 : TTGCCTCGTGGGATATCAGCTATTTCTGgt.........................a : 1695616 296 : AlaThrIleSerPheAlaArgArgPheIlePheValPheMetLeuAsnGlySerM : 313 .!! ! ! !! !:!!|||!.! !! !!!.|||.!!! ||| |||!!!: +ThrAspSerProProSerArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrL 1695617 : gACAGACTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTT : 1695672 314 : etPheLeuLeuPheMetValThrTyrSerCysAsnGlyValIleGluHisSerAsp : 331 !!! !! !||||||||| !!||||||||||||:!!|||:!!! !..!.!.||| euCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGluSerMet 1695673 : TGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATG : 1695726 332 : AsnValAlaValGlyAlaTyrSerAlaLeuTrpThrIleMetProMetAspLysPh : 350 :!!|||::! !!.!!.!!:!:!! !! !|||.!!! !:!!|||||||||!:! AspValSerArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAspArgAs 1695727 : GACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAA : 1695783 351 : eGlyLysIleLeuArgLysAspLeuIleIleValIleArgArgSerArgArgValC : 369 !||||||! !:!!|||:!!..!:!!:!!!!:||||||! !||||||!.!||| !| nGlyLysSerValArgGlnSerMetLeuMetValIleMetArgSerAsnArgCysC 1695784 : TGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTT : 1695840 370 : ysCysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrLys > : 387 ||||||||||||||!:!||||||||||||||||||||||||||||||||| ! ysCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrGly++ 1695841 : GCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGgt. : 1695896 388 : >>> Target Intron 3 >>>> IleLeuSerThrAlaLeuSerTyrPheThr : 396 319 bp :!!||||||||||||:!!|||||||||||| ++ValLeuSerThrAlaMetSerTyrPheThr 1695897 : ........................agGTCCTCAGCACTGCAATGTCATACTTTACA : 1696240 397 : LeuLeu : 398 |||||| LeuLeu 1696241 : CTACTG : 1696248 vulgar: AmOr80 147 398 . KQ414915.1 1694346 1696248 + 588 M 37 111 5 0 2 I 0 405 3 0 2 M 61 183 G 0 6 M 49 147 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694347 1696248 588 + . gene_id 1 ; sequence AmOr80 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694347 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694347 1694457 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 2 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696248 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696248 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694347 1696248 588 + . alignment_id 1 ; Query AmOr80 ; Align 1694347 148 111 ; Align 1694867 185 183 ; Align 1695056 246 147 ; Align 1695618 295 276 ; Align 1696213 387 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr80 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 546 Query range: 147 -> 398 Target range: 1706992 -> 1709231 148 : PheIleAlaGlnSerGlySerAsnGluSerGluArgMetLeuProPheAsnMetTr : 166 ||| !! !... |||...|||||||||:!:|||!!:||| ! !!|||.!.|| PheSerGluSerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTr 1706993 : TTTTCAGAAAgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTG : 1707047 167 : pIleAsnLeuProIleSerArgThrProTyrTyrGlnIleThrPheLeuIleGln : 185 ||||:!!!!!|||! !!!!! !||||||||||||:!!||| !||| ! ||| pIleAspPheProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln+ 1707048 : GATTGACTTTCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGg : 1707104 186 : >>>> Target Intron 1 >>>> AlaThrCysValTyrTyrValGlyIleS : 194 276 bp !.! ! !||| |||||| !!|||| + ++ValPheIleValMetTyrValCysIleS 1707105 : t.........................agGTTTTTATCGTAATGTACGTTTGCATAA : 1707407 195 : erTyrPheCysPheAspAsnIlePheCysIleMetAlaValHisLeuAlaGlyGln : 212 |||||.!!|||.!!||||||.!!.!.|||!!:!!: !:!!||| !||| !||| erTyrLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGln 1707408 : GCTACCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAA : 1707461 213 : PheArgIleLeuArgTyrArgPheThrLysLeuCysAspMetGluTyrGlyIleLy : 231 ||||||||||||!:!||||||.!.:!!!!.:!!|||! ! .!. ! !!! PheArgIleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAs 1707462 : TTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcga : 1707518 232 : sGluAsnSerGlnSerIleLeuSerLysGlnMetHisLysPheTyrGluLysPheA : 250 ::: |||:::... ! !|||!!...! !!:!!! !|||! ||||||! pLysIleSerLysLysThrProSerAsnSer---AspGluCysTyrAlaLysPheL 1707519 : taaaatttcgaaaaaaacaCCGTCCAATTCG---GACGAATGCTACGCTAAGTTCA : 1707572 251 : rgLysCysValGlnHisHisGlnAlaLeuIleAspPheTyrGlnAsnLeuGluAsn : 268 :!!!.|||:!!|||!!.|||||||||||||||!!:!:!! !.!..!.|||:!!.!. ysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGlu 1707573 : AAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAG : 1707626 269 : ValTyrThrMetIleThrPheGlyGlnValLeuValPheSerValLeuIleCysLe : 287 |||!:! !:!:.!!..!.!!!.!|||||||||:!!||||||:!!|||!!:||||| ValPheGlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLe 1707627 : GTGTTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCT : 1707683 288 : uPheGlyTyrGlnValLeu >>>> Target Intron 2 >>>> ValAlaTh : 296 | !|||||| !|||:!! 457 bp ! !! !|| uAspGlyTyrLeuValMet++ ++GluAspTh 1707684 : CGATGGATATTTGGTGATGgt.........................agGAAGATAC : 1708167 297 : rIleSerPheAlaArgArgPheIlePheValPheMetLeuAsnGlySerMetPheL : 315 | !!.!! !!:!|||.!!! !|||:!!||| |||!..|||!!!:!!! !! r---ProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysG 1708168 : T---CCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCC : 1708221 316 : euLeuPheMetValThrTyrSerCysAsnGlyValIleGluHisSerAspAsnVal : 333 !|||!!.||| !!||||||||||||:!! !!:!!|||..!.!.||| |||||| lnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnVal 1708222 : AACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTG : 1708275 334 : AlaValGlyAlaTyrSerAlaLeuTrpThrIleMetProMetAspLysPheGlyLy : 352 ||| !!.! !|||..!..!! !|||! ! !:!!|||||||||!:!! !|||:: AlaAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyAr 1708276 : GCCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCG : 1708332 353 : sIleLeuArgLysAspLeuIleIleValIleArgArgSerArgArgValCysCysL : 371 !!!:|||||||||||||||! !.!!|||||| !!||||||||| ! !||||||| gMetLeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysL 1708333 : AATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTC : 1708389 372 : euThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrLys >>>> Ta : 387 |||||||| !|||||||||||||||||||||||||||||||||..! euThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708390 : TCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt....... : 1708439 388 : rget Intron 3 >>>> IleLeuSerThrAlaLeuSerTyrPheThrLeuLeu : 398 759 bp ||||||||||||||| !|||||||||||||||||| ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeu 1708440 : ..................agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTA : 1709229 vulgar: AmOr80 147 398 . KQ414915.1 1706992 1709231 + 546 M 37 111 5 0 2 I 0 272 3 0 2 M 57 171 G 1 0 M 51 153 5 0 2 I 0 453 3 0 2 M 3 9 G 1 0 M 89 267 5 0 2 I 0 755 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1706993 1709231 546 + . gene_id 2 ; sequence AmOr80 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1706993 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1706993 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709231 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709231 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1706993 1709231 546 + . alignment_id 2 ; Query AmOr80 ; Align 1706993 148 111 ; Align 1707380 185 171 ; Align 1707551 243 153 ; Align 1708161 294 9 ; Align 1708170 298 267 ; Align 1709196 387 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr80 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 369 Query range: 232 -> 401 Target range: 1688466 -> 1690082 233 : AsnSerGlnSerIleLeuSerLysGlnMetHisLysPheTyrGluLysPheArgLy : 251 :!!..!!:!!!!! !:!!!!!:!! ! ! !:!!|||! !||| |||.!.! ! ! AspGluArgThrAsnMetThrGluTyrThrAsnLysCysTyrThrLysLeuIleAs 1688467 : GACGAGCGAACGAACATGACCGAATACACGAACAAATGTTACACCAAGCTGATAGA : 1688521 252 : sCysValGlnHisHisGlnAlaLeuIleAspPheTyrGlnAsnLeuGluAsnValT : 270 |||:!!:!!:!!||||||:!!||||||!!:|||! ! !!!.||||||||||||| pCysIleLysAsnHisGlnSerLeuIleGluPheCysValLysLeuGluAsnValT 1688522 : TTGCATCAAAAATCATCAGTCGTTGATCGAGTTCTGCGTGAAACTCGAGAACGTGT : 1688578 271 : yrThrMetIleThrPheGlyGlnValLeuValPheSerValLeuIleCysLeuPhe : 288 |||||:!!! !! !.!!|||!!.:!!:!!|||||||||:!!|||!!:|||!!! ! yrThrLeuThrIleLeuGlyHisIleValValPheSerLeuLeuMetCysPheAsp 1688579 : ACACGTTGACTATACTCGGCCACATAGTGGTCTTCAGCTTGTTGATGTGCTTCGAC : 1688632 289 : GlyTyrGlnValLeuVal >>>> Target Intron 1 >>>> AlaThrIle : 297 !|||:!!|||:!!:!! 816 bp |||! !:!! ThrTyrGluValValLeu++ ++AlaLysVal 1688633 : ACGTACGAGGTAGTTCTGgt.........................agGCAAAGGTA : 1689475 298 : SerPheAlaArgArgPheIlePheValPheMetLeuAsnGlySerMetPheLeuLe : 316 !! !.!!! !|||.!!||||||:!!||| :!!! !||||||.!..!!! :: ProThrThrThrArgLeuIlePheLeuPheHisMetIleGlySerPheIleHisIl 1689476 : CCTACCACGACGCGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCacat : 1689532 317 : uPheMetValThrTyrSerCysAsnGlyValIleGluHisSerAspAsnValAlaV : 335 :...... ||||||||||||..!|||:!!||||||.!.||| :!!:!!|||. eIlePhePheThrTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleAlaT 1689533 : aattttcttcacgtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCAA : 1689589 336 : alGlyAlaTyrSerAlaLeuTrpThrIleMetProMetAspLysPheGlyLysIle : 353 .!!.!.!!|||:!!!.!:!!||||||:!!:!!||||||:!!||| !!||||||!!: hrAlaThrTyrAlaGlyMetTrpThrValLeuProMetAsnLysValGlyLysMet 1689590 : CAGCAACGTATGCAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAATG : 1689643 354 : LeuArgLysAspLeuIleIleValIleArgArgSerArgArgValCysCysLeuTh : 372 :!!||| !:!!:!!! :!!:!!! ! !|||||| !!:! !||||||:!!|| IleArgGlyAsnMetLysLeuMetThrValArgSerLeuGlnProCysCysIleTh 1689644 : ATACGAGGAAATATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAAC : 1689700 373 : rAlaAsnGlyPhePheProValSerLeuGluThrTyrThrLys >>>> Target : 387 ||||..!|||||||||||||||||||||:!!||| !||| ! 2 rAlaGlyGlyPhePheProValSerLeuLysThrAlaThrAla++ 1689701 : TGCTGGTGGATTCTTTCCTGTCTCCTTGAAAACTGCTACCGCGgt........... : 1689747 388 : Intron 2 >>>> IleLeuSerThrAlaLeuSerTyrPheThrLeuLeuSerA : 400 93 bp :!!:!!|||:!!.!!:!!|||||||||||||||:!!!!!. ++LeuMetSerSerThrMetSerTyrPheThrLeuMetArgG 1689748 : ..............agCTAATGAGTTCCACAATGTCGTATTTCACGCTCATGAGAG : 1690077 401 : snArg : 401 !.||| luArg 1690078 : AGAGA : 1690082 vulgar: AmOr80 232 401 . KQ414915.1 1688466 1690082 + 369 M 62 186 5 0 2 I 0 812 3 0 2 M 92 276 5 0 2 I 0 289 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688467 1690082 369 + . gene_id 3 ; sequence AmOr80 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688467 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688467 1688652 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690082 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690082 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688467 1690082 369 + . alignment_id 3 ; Query AmOr80 ; Align 1688467 233 186 ; Align 1689469 295 276 ; Align 1690038 387 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr80 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 308 Query range: 245 -> 390 Target range: 1712080 -> 1712657 246 : TyrGluLysPheArgLysCysValGlnHisHisGlnAlaLeuIleAspPheTyrGl : 264 |||!!: |||!:!!:!||||||!::!!.||||||:!!|||!!:! !|||! :: TyrAspValPheLysArgCysValArgGlnHisGlnSerLeuMetAlaPheCysGl 1712081 : TACGACGTTTTCAAAAGATGCGTTCGTCAACATCAATCTCTGATGGCTTTCTgcga : 1712135 265 : nAsnLeuGluAsnValTyrThrMetIleThrPheGlyGlnValLeuValPheSerV : 283 :...||||||...:::!:!!:!||||||! !.!.||||||:!!||||||||||||: uLysLeuGluGluMetPheSerMetIleIleLeuGlyGlnLeuLeuValPheSerI 1712136 : gaaactcgaagaaatgTTCAGTATGATTATACTGGGGCAATTGTTAGTGTTCAGTA : 1712192 284 : alLeuIleCysLeuPheGlyTyrGlnVal<->LeuValAlaThrIleSerPhe > : 300 !!!!!!!:|||||| !! !! !|||||| ||||||::!:!!|||||| lePheMetCysLeuAspValCysGlnValLeuLeuValSerSerIleSerLys-+ 1712193 : TTTTTATGTGTCTCGACGTGTGCCAAGTACTTCTGGTTAGTTCAATTAGCAAAat. : 1712248 301 : >>> Target Intron 1 >>>> AlaArgArgPheIlePheValPheMetLeu : 309 139 bp !.!!:!!:!...||||||...||| ||| -+GlyLysGlnMetIlePheThrPheHisLeu 1712249 : ........................tgGGTAAACAGAtgattttcacgtttcacctA : 1712412 310 : AsnGlySerMetPheLeuLeuPheMetValThrTyrSerCysAsnGlyValIleGl : 328 |||!!!|||! !! !|||.!.||| !!||||||||||||:!! !!:!!||| AlaGlyCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleTh 1712413 : GCGGGATGTATGTGTCAATTGCTGATGTTTACGTACAGCTGCGATTGTATAATAAC : 1712469 329 : uHisSerAspAsnValAlaValGlyAlaTyrSerAlaLeuTrpThrIleMetProM : 347 !.!.||| ||||||.!!! !!.!!.!|||..!!.!! !||| !! !:!!|||| rGluSerLeuAsnValThrGluAlaValTyrAspGlyProTrpProArgLeuProM 1712470 : GGAAAGTTTGAACGTGACGGAAGCGGTGTACGATGGACCATGGCCACGTTTGCCAA : 1712526 348 : etAspLysPheGlyLysIleLeuArgLysAspLeuIleIleValIleArgArgSer : 365 ||..!! ! |||!:!!!::!!|||||||||||||||:!!||||||! !|||||| etSerThrArgGlyArgMetIleArgLysAspLeuIleLeuValIleIleArgSer 1712527 : TGAGCACGAGAGGAAGAATGATAAGGAAGGATTTGATACTCGTTATCATAAGATCG : 1712580 366 : ArgArgValCysCysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTy : 384 ||| ! !|||||||||||||||!..||||||||| !:!!|||||||||||||| ArgValProCysCysLeuThrAlaArgGlyPhePheValIleSerLeuGluThrTy 1712581 : AGAGTACCTTGTTGCTTGACCGCCAGAGGATTCTTCGTAATATCTTTGGAAACGTA : 1712637 385 : rThrLysIleLeuSerThr : 390 |||||||:!!:!!..!:!! rThrLysValIleAspSer 1712638 : TACGAAGGTAATTGACTCT : 1712657 vulgar: AmOr80 245 390 . KQ414915.1 1712080 1712657 + 308 M 47 141 G 0 3 M 7 21 5 0 2 I 0 135 3 0 2 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712081 1712657 308 + . gene_id 4 ; sequence AmOr80 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1712081 1712245 . + . KQ414915.1 exonerate:protein2genome:local exon 1712081 1712245 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712246 1712247 . + . intron_id 1 ; splice_site "AT" KQ414915.1 exonerate:protein2genome:local intron 1712246 1712384 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1712383 1712384 . + . intron_id 0 ; splice_site "TG" KQ414915.1 exonerate:protein2genome:local cds 1712385 1712657 . + . KQ414915.1 exonerate:protein2genome:local exon 1712385 1712657 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712081 1712657 308 + . alignment_id 4 ; Query AmOr80 ; Align 1712081 246 141 ; Align 1712225 293 21 ; Align 1712385 300 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr80 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 298 Query range: 147 -> 297 Target range: 1699025 -> 1699980 148 : PheIleAlaGlnSerGlySerAsnGluSerGluArgMetLeuProPheAsnMetTr : 166 .!!:!!|||... ||| |||...|||!!:|||:!!||||||||||||||||| IleLeuAlaAsnIleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTr 1699026 : ATTTTAgcaaatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTG : 1699080 167 : pIleAsnLeuProIleSerArgThrProTyrTyrGlnIle >>>> Target In : 180 |:!!:!!||||||:!:||| !:!!||| |||:!!||| 495 pValAspLeuProLeuSerValSerProThrTyrGluIle++ 1699081 : GGTTGATTTGCCGCTGTCTGTGTCACCAACGTACGAAATAgt.............. : 1699124 181 : tron 1 >>>> ThrPheLeuIle----GlnAlaThrCysValTyrTyrValGly : 192 bp ! !|||! !:!!####|||!.! !! !:!!|||:!!|||||| ++ArgPheCysVal####GlnValLeuSerLeuTyrHisValGly 1699125 : ...........agAGATTTTGTGTTTGCACAGGTTCTGTCTTTGTACCACGTTGGT : 1699657 193 : IleSerTyrPheCysPheAspAsnIlePheCysIleMetAlaValHisLeuAlaGl : 211 :!!!!!|||.!!||||||||||||:!!!!.|||:!:||| !:!!||| !||| ValCysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaTh 1699658 : GTATGTTACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTAC : 1699714 212 : yGlnPheArgIleLeuArgTyrArgPheThrLysLeuCysAspMet<->GluTyrG : 229 !|||||||||||||||!:!||||||!!.:!!!!.||| !!|||! ! ..! ! rGlnPheArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysG 1699715 : TCAATTTCGTATACTGCAATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGC : 1699771 230 : lyIleLysGluAsn<->SerGlnSerIleLeuSerLysGlnMetHisLysPheTyr : 246 !:!! ! !!:||| |||...:!! !||||||::: !.!.!!.! !||| lnValAspAspAsnGluSerSerAlaAlaLeuSerArgPheAlaGluAsnCysTyr 1699772 : AAGTAGATGACAATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTAT : 1699825 247 : GluLysPheArgLysCysValGlnHisHisGlnAlaLeuIleAspPheTyrGlnAs : 265 :!! !|||!:!!!.||||||!:!!!.|||||| !! !||| !:!! !!!.!. LysAlaPheLysAsnCysValArgGlnHisGlnAsnHisIleThrTyrCysHisAr 1699826 : AAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCATATCACGTACTGTCACAG : 1699882 266 : nLeuGluAsnValTyrThrMetIleThrPheGlyGlnValLeuValPheSerValL : 284 .|||.!..!.:!!!:!|||:!:|||..!.!!|||!!.:!!||||||||||||:!!| gLeuAsnGluIlePheThrValIleValLeuGlyHisIleLeuValPheSerLeuL 1699883 : ATTGAACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGCCTTC : 1699939 285 : euIleCysLeuPheGlyTyrGlnValLeuValAlaThrIle : 297 ||||||||||| !!|||!:!||||||||||||! !!.!||| euIleCysLeuValGlyPheGlnValLeuValGluAsnIle 1699940 : TGATATGTCTGGTTGGATTCCAAGTGCTCGTAGAAAACATC : 1699980 vulgar: AmOr80 147 297 . KQ414915.1 1699025 1699980 + 298 M 32 96 5 0 2 I 0 491 3 0 2 M 4 12 F 0 4 M 43 129 G 0 3 M 7 21 G 0 3 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699026 1699980 298 + . gene_id 5 ; sequence AmOr80 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1699026 1699121 . + . KQ414915.1 exonerate:protein2genome:local exon 1699026 1699121 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699122 1699123 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699122 1699616 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699615 1699616 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699617 1699980 . + . KQ414915.1 exonerate:protein2genome:local exon 1699617 1699980 . + . insertions 6 ; deletions 0 ; frameshifts 4 KQ414915.1 exonerate:protein2genome:local similarity 1699026 1699980 298 + . alignment_id 5 ; Query AmOr80 ; Align 1699026 148 96 ; Align 1699617 180 12 ; Align 1699633 184 129 ; Align 1699765 227 21 ; Align 1699789 234 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr80 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 247 Query range: 296 -> 393 Target range: 1702965 -> 1703256 297 : IleSerPheAlaArgArgPheIlePheValPheMetLeuAsnGlySerMetPheLe : 315 :!:!!! |||||||||.!!! !||||||||| :!! !||||||:!:! !! ValThrProAlaArgArgLeuThrPheValPheHisIleValGlySerLeuCysGl 1702966 : GTGACTCCAGCGAGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCA : 1703020 316 : uLeuPheMetValThrTyrSerCysAsnGlyValIleGluHisSerAspAsnValA : 334 !|||!!.:!: !!||||||||||||:!!|||:!!||||||.!.||| |||:!!! nLeuLeuLeuPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleG 1703021 : ACTATTGCTATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCG : 1703077 335 : laValGlyAlaTyrSerAlaLeuTrpThrIleMetProMetAspLysPheGlyLys : 352 .!..!!.! !||| !!.!! !|||! ! !:!!|||||||||||| !|||!:! lyThrAlaIleTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArg 1703078 : GGACTGCGATATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGA : 1703131 353 : IleLeuArgLysAspLeuIleIleValIleArgArgSerArgArgValCysCysLe : 371 ! ||||||!:!||||||! !!!:|||||| !|||||||||!:! ! !!||||| ArgLeuArgArgAspLeuThrMetValIleValArgSerArgLysSerSerCysLe 1703132 : AGGTTGAGAAGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTT : 1703188 372 : uThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrLysIleLeuSerT : 390 |||||||!:!|||||||||||||||||||||||||||! !|||! !:!!!!!!:! uThrAlaSerGlyPhePheProValSerLeuGluThrCysThrThrValPheAsnP 1703189 : AACTGCCAGCGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATT : 1703245 391 : hrAlaLeuSer : 393 !:!!!!!||| heSerPheSer 1703246 : TCTCATTCTCT : 1703256 vulgar: AmOr80 296 393 . KQ414915.1 1702965 1703256 + 247 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702966 1703256 247 + . gene_id 6 ; sequence AmOr80 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702966 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1702966 1703256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702966 1703256 247 + . alignment_id 6 ; Query AmOr80 ; Align 1702966 297 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr80 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 242 Query range: 183 -> 294 Target range: 1702013 -> 1702352 184 : GlnAlaThrCysValTyrTyrValGlyIleSerTyrPheCysPheAspAsnIlePh : 202 |||!.! !! !:!!|||:!!||||||:!!!!!|||.!!||||||||||||:!!!! GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 203 : eCysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeuArgTyrArgPheT : 221 .|||:!:||| !:!!||| !||| !|||||||||||||||!:!||||||!!.: uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 222 : hrLysLeuCysAspMet<->GluTyrGlyIleLysGluAsn<->SerGlnSerIle : 237 !!!!.||| !!|||! ! ..! ! !:!! ! !!:||| |||...:!! ! erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1702179 238 : LeuSerLysGlnMetHisLysPheTyrGluLysPheArgLysCysValGlnHisHi : 256 ||||||::: !.!.!!.! !|||:!! !|||!:!!!.||||||!:!!!.|| LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHi 1702180 : CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACA : 1702236 257 : sGlnAlaLeuIleAspPheTyrGlnAsnLeuGluAsnValTyrThrMetIleThrP : 275 |||| !! !||| !:!! !!!.!..|||.!..!.:!!!:!|||:!:|||..!. sGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValL 1702237 : TCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTAC : 1702293 276 : heGlyGlnValLeuValPheSerValLeuIleCysLeuPheGlyTyrGlnValLeu : 293 !!|||!!.:!!||||||||||||:!!|||||||||||| !!|||!:!||||||||| euGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeu 1702294 : TCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTC : 1702347 294 : Val : 294 ||| Val 1702348 : GTG : 1702352 vulgar: AmOr80 183 294 . KQ414915.1 1702013 1702352 + 242 M 43 129 G 0 3 M 7 21 G 0 3 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1702352 242 + . gene_id 7 ; sequence AmOr80 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702014 1702352 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702352 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1702352 242 + . alignment_id 7 ; Query AmOr80 ; Align 1702014 184 129 ; Align 1702146 227 21 ; Align 1702170 234 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr80 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 300 -> 398 Target range: 1682556 -> 1683048 301 : ArgArgPheIlePheValPheMetLeuAsnGlySerMetPheLeuLeuPheMetVa : 319 !:!|||!!.:!:|||:!! ! !!! !|||.!!:!!.!. :::|||::::: LysArgLeuLeuPheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePheLeuIl 1682557 : AAACGATTGTTGTTCCTAAATTACTTTCTCGGTGGAGTGATacagatatttttaat : 1682611 320 : lThrTyrSerCysAsnGlyValIleGluHisSerAspAsnValAlaValGlyAlaT : 338 :||| !:!||||||! !:!!!!:|||!!.|||! ! !:!!!.!..!!.! !| eThrLeuAsnCysAsnAspIleMetGluGlnSerGlyAlaIleGlyThrAlaIleT 1682612 : aacccTAAATTGCAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAGCGATCT : 1682668 339 : yrSerAlaLeuTrpThrIleMetProMetAspLysPheGlyLysIleLeuArgLys : 356 |||||..! !||| !! ! ::: ||| :!! !!!|||||| yrSerCysAsnTrpGluArgAsnValTyrAsnHisPheTyrGln---PheArgLys 1682669 : ACAGTTGTAATTGGGAGAGGAAtgtttataatcatttttaccAG---TTCAGAAAG : 1682719 357 : AspLeuIleIleValIleArgArgSerArgArgValCysCysLeuThrAlaAsnGl : 375 |||:!!!!:||||||!!: !|||:!!!:!||| !|||! !:!!:!!||| AspMetMetIleValMetValArgAlaLysArgProCysTyrIleSerAlaAlaLy 1682720 : GATATGATGATTGTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGCAGCGAA : 1682776 376 : yPhePheProValSerLeuGluThrTyrThrLys >>>> Target Intron 1 : 387 !|||||||||:!!|||||||||:!!!:!|||||| 201 bp sPhePheProIleSerLeuGluSerPheThrLys++ 1682777 : ATTCTTTCCAATCTCCCTTGAATCGTTCACGAaggt.................... : 1682814 388 : >>>> IleLeuSerThrAlaLeuSerTyrPheThrLeuLeu : 398 :!:||||||.!!.!! !||||||!:!||||||||| ++ValLeuSerAlaThrAlaSerTyrTyrThrLeuLeu 1682815 : .....agGTGTTAAGTGCAACAGCATCTTATTATACACTGCTG : 1683048 vulgar: AmOr80 300 398 . KQ414915.1 1682556 1683048 + 175 M 52 156 G 1 0 M 33 99 5 0 2 I 0 197 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682557 1683048 175 + . gene_id 8 ; sequence AmOr80 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1682557 1682811 . + . KQ414915.1 exonerate:protein2genome:local exon 1682557 1682811 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1682812 1682813 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1682812 1683012 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1683011 1683012 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1683013 1683048 . + . KQ414915.1 exonerate:protein2genome:local exon 1683013 1683048 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1682557 1683048 175 + . alignment_id 8 ; Query AmOr80 ; Align 1682557 301 156 ; Align 1682713 354 99 ; Align 1683013 387 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr80 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 152 -> 217 Target range: 1681731 -> 1682049 153 : GlySerAsnGluSerGluArgMetLeuProPheAsnMetTrpIle<->AsnLeuPr : 170 |||!.!!:!!!:..!||||||!!:||||||||| .!. ! :!: |||||||| GlyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAsnLeuPr 1681732 : GGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAACTTGCC : 1681786 171 : oIleSerArgThrProTyrTyrGlnIleThrPheLeuIleGln >>>> Target : 185 |! ||| !||||||||||||:::||| |||:!!|||:!! 1 oThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681787 : TACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt........... : 1681833 186 : Intron 1 >>>> AlaThrCysValTyrTyrValGlyIleSerTyrPheCysP : 198 20 bp .!! !! !||| :!! !||||||!!!!:!! !|||| ++ThrLeuSerValValHisSerGlyIleCysPheCysCysP 1681834 : ..............agACATTATCTGTGGTGCATTCGGGAATTTGTTTCTGTTGTT : 1681990 199 : heAspAsnIlePheCysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeu : 216 ||||||||.!!.!.||||||:!!::!:!!|||:!!!.!|||||||||!:!|||||| heAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLysIleLeu 1681991 : TCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAGATTTTA : 1682044 217 : Arg : 217 !:! Gln 1682045 : CAA : 1682049 vulgar: AmOr80 152 217 . KQ414915.1 1681731 1682049 + 167 M 15 45 G 0 3 M 17 51 5 0 2 I 0 116 3 0 2 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681732 1682049 167 + . gene_id 9 ; sequence AmOr80 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681732 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681732 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682049 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682049 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681732 1682049 167 + . alignment_id 9 ; Query AmOr80 ; Align 1681732 153 45 ; Align 1681780 168 51 ; Align 1681951 185 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr80 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 179 -> 223 Target range: 1711870 -> 1712002 180 : ThrPheLeuIleGlnAlaThrCysValTyrTyrValGlyIleSerTyrPheCysPh : 198 ||| !!! !|||!.! !! !!.!||| ! :!!|||:!:|||||| !||||| ThrThrPheAlaGlnValLeuSerAlaTyrGlnIleGlyValSerTyrGlyCysPh 1711871 : ACAACATTTGCACAGGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGGTTGCTT : 1711925 199 : eAspAsnIlePheCysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeuA : 217 |||||||:!!.!.||||||||| !:!!||||||||| !|||||||||||||||! eAspAsnValLeuCysIleMetAsnLeuHisLeuAlaThrGlnPheArgIleLeuG 1711926 : CGACAACGTTCTATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAATACTGC : 1711982 218 : rgTyrArgPheThrLysLeu : 223 :!:!!|||.!...!!!.:!! lnHisArgLeuValAsnIle 1711983 : AACATAGACTGGTGAATATA : 1712002 vulgar: AmOr80 179 223 . KQ414915.1 1711870 1712002 + 126 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711871 1712002 126 + . gene_id 10 ; sequence AmOr80 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1711871 1712002 . + . KQ414915.1 exonerate:protein2genome:local exon 1711871 1712002 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711871 1712002 126 + . alignment_id 10 ; Query AmOr80 ; Align 1711871 180 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr80 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 0 -> 57 Target range: 1685751 -> 1685922 1 : MetGlnThrGluSerGlnLeuAspIleSerIleAsnLeuSerThrPhePheLeuLy : 19 ||||||.!! !!.! ! !|||||||||:!!!!. ... |||...||||| MetGlnAlaThrLysTyrArgAspIleSerLeuLysCysGlyIlePheLeuLeuLy 1685752 : ATGCAGGCGACAAAATACAGGGATATTTCCCTCAAgtgtggaatttttcttttgaa : 1685806 20 : sAsnValGlyIleTrpMetSerAspAsnProAsnGluGlnArgArgIleLysMetL : 38 | ||||||:!!||||||||| ||| ! !|||:!!||||||! !:!.!. sLeuValGlyLeuTrpMetSerMetAsnSerValGluGluArgArgArgArgPheT 1685807 : attagtCGGCCTCTGGATGTCCATGAACAGCGTCGAGGAGCGTCGAAGGAGGTTCA : 1685863 39 : euPheLeuTyrThrIleTrpAsnLeuLeuPheGlyThrValValAsnSerArgAsp : 56 !!!.!!! :!!:!!!:: !|||! !!:!|||..! !|||||| !!.!||| hrLeuPheGlySerValPheAlaLeuSerTyrGlyValTyrValAsnValAsnAsp 1685864 : CGTTGTTCGGATCAGTTTTCGCCCTTTCTTACGGCGTTTACGTGAACGTAAACGAT : 1685917 57 : Leu : 57 :!! Ile 1685918 : ATT : 1685922 vulgar: AmOr80 0 57 . KQ414915.1 1685751 1685922 + 104 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1685752 1685922 104 + . gene_id 11 ; sequence AmOr80 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1685752 1685922 . + . KQ414915.1 exonerate:protein2genome:local exon 1685752 1685922 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1685752 1685922 104 + . alignment_id 11 ; Query AmOr80 ; Align 1685752 1 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr78 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 559 Query range: 147 -> 397 Target range: 1694346 -> 1696248 148 : PheAlaIleArgSerGlyAsnAsnGluSerGluArgMetLeuProPheAsnMetTr : 166 ||| ! !!.! !|||!!.|||:!!||||||||||||||||||||||||||||| PheLeuAlaAsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTr 1694347 : TTTTTAGCAAATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTG : 1694401 167 : pLeuAspMetProLeuSerLysThrProTyrTyrGluIleThrPheLeuIleGln : 185 |:!!|||.!.||| !.!! !:!!||||||||||||:!! !|||:!!|||||| pValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGln+ 1694402 : GGTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGg : 1694458 186 : >>>> Target Intron 1 >>>> AlaMetCysValTyrTyrIleGlyIleS : 194 409 bp .!!:!:|||||||||:!!:!!||||||! + ++ThrLeuCysValTyrHisValGlyIleC 1694459 : t.........................agACACTTTGCGTGTACCATGTCGGTATAT : 1694894 195 : erAsnPheCysPheAspThrValPheCysIleMetAlaValHisLeuAlaGlyGln : 212 !! !!.!.|||||||||!.!:!!.!! !!:!!:!! !:!!|||:!!||| !||| ysTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGln 1694895 : GTTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAA : 1694948 213 : PheArgIleLeuGlnTyrArgPheThrLysLeuCysAspThr<->AspAsnGlnIl : 230 ||||||||||||||||||||||||! !!!.||| !!:!!..! !!:!!.|||! PheArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLysGlnTh 1694949 : TTTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAAC : 1695005 231 : eCysLysLysAsnLeuIleLeu<-><->GluGluGlnMetGlnLysPheHisGluL : 247 ! ! :::...||| ::: !.!. ! ! !:!! !: rAspGlyArgGluLeuGluIleGlyTyrThrAsnPheThrValAspSerTyrLeuG 1695006 : AGACGGTcgagaattggaaattggtTACACAAATTTCACAGTCGATAGTTACTTAC : 1695062 248 : ysPheLysLysTyrValArgArgHisGlnAlaLeuIleAspTyrHisGlnLysLeu : 265 !!!!.|||!..! !|||!:! !||||||||||||! !! !||| !:!!|||||| lnLeuLysSerCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeu 1695063 : AATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTG : 1695116 266 : GluAsnValTyrThrThrIleMetLeuSerGlnValLeuLeuPheSerValLeuIl : 284 ||||||:!!!:!:!! !:!!:!!|||.!!|||||||||!!!.!.:!!:!!:!!:! GluAsnIlePheSerLeuLeuValLeuGlyGlnValLeuPheLeuAlaMetValLe 1695117 : GAGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTACT : 1695173 285 : eCysLeuPheGlyTyrGlnValLeuLeu >>>> Target Intron 2 >>>> : 294 !|||||| ! |||||||||:!!!!!||| 415 bp uCysLeuValGlyTyrGlnLeuPheLeu++ + 1695174 : TTGCCTCGTGGGATATCAGCTATTTCTGgt.........................a : 1695616 295 : AlaThrAlaSerLeuAlaArgArgSerIlePheIlePheLeuLeuMetGlyAlaM : 312 .!! !:!! !!! !:!!|||!.! ! !!!.:!!.!! !||| |||.!!: +ThrAspSerProProSerArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrL 1695617 : gACAGACTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTT : 1695672 313 : etPheLeuLeuPheMetPheThrPheSerCysAsnGlyValMetGluGlnSerAsp : 330 !!! !! !|||||||||||||||!:!||||||:!!|||:!!! ..!:!!||| euCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGluSerMet 1695673 : TGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATG : 1695726 331 : AsnValAlaValGlyThrTyrSerAlaLeuTrpThrValMetProMetGluLysPh : 349 :!!|||::! !!.!..!!:!:!! !! !|||.!! !:!!||||||!!:!:! AspValSerArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAspArgAs 1695727 : GACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAA : 1695783 350 : eGlyArgMetLeuArgLysAspLeuIleMetValIleMetArgSerArgArgValC : 368 !|||!:!! :!!|||:!!..!:!!:!!||||||||||||||||||!.!||| !| nGlyLysSerValArgGlnSerMetLeuMetValIleMetArgSerAsnArgCysC 1695784 : TGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTT : 1695840 369 : ysCysLeuThrAlaAsnArgPhePheProIleSerLeuGluThrTyrThrLys > : 386 ||||||||||||||!:! !!|||||||||:!!|||||||||||||||||| ! ysCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrGly++ 1695841 : GCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGgt. : 1695896 387 : >>> Target Intron 3 >>>> IleLeuSerThrAlaValSerTyrPheThr : 395 319 bp :!!||||||||||||:!!|||||||||||| ++ValLeuSerThrAlaMetSerTyrPheThr 1695897 : ........................agGTCCTCAGCACTGCAATGTCATACTTTACA : 1696240 396 : LeuLeu : 397 |||||| LeuLeu 1696241 : CTACTG : 1696248 vulgar: AmOr78 147 397 . KQ414915.1 1694346 1696248 + 559 M 37 111 5 0 2 I 0 405 3 0 2 M 42 126 G 0 3 M 11 33 G 0 6 M 56 168 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694347 1696248 559 + . gene_id 1 ; sequence AmOr78 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694347 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694347 1694457 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 2 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696248 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696248 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694347 1696248 559 + . alignment_id 1 ; Query AmOr78 ; Align 1694347 148 111 ; Align 1694867 185 126 ; Align 1694996 227 33 ; Align 1695035 238 168 ; Align 1695618 294 276 ; Align 1696213 386 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr78 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 550 Query range: 147 -> 399 Target range: 1706992 -> 1709237 148 : PheAlaIleArgSerGlyAsnAsnGluSerGluArgMetLeuProPheAsnMetTr : 166 |||:!! !! |||...|||||||||:!:|||!!:||| ! !!|||.!.|| PheSerGluSerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTr 1706993 : TTTTCAGAAAgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTG : 1707047 167 : pLeuAspMetProLeuSerLysThrProTyrTyrGluIleThrPheLeuIleGln : 185 |:!!|||.!.||| !!!!! !|||||||||||||||||| !||| ! ||| pIleAspPheProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln+ 1707048 : GATTGACTTTCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGg : 1707104 186 : >>>> Target Intron 1 >>>> AlaMetCysValTyrTyrIleGlyIleS : 194 276 bp !.!.!. !||| |||:!! !!|||| + ++ValPheIleValMetTyrValCysIleS 1707105 : t.........................agGTTTTTATCGTAATGTACGTTTGCATAA : 1707407 195 : erAsnPheCysPheAspThrValPheCysIleMetAlaValHisLeuAlaGlyGln : 212 || !!.!!|||.!!|||!.! !!.!.|||!!:!!: !:!!||| !||| !||| erTyrLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGln 1707408 : GCTACCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAA : 1707461 213 : PheArgIleLeuGlnTyrArgPheThrLysLeuCysAspThrAspAsnGlnIleCy : 231 |||||||||||||||||||||.!.:!!!!.:!!|||! !.!!:!!.!.!::! PheArgIleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAs 1707462 : TTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcga : 1707518 232 : sLysLysAsnLeuIleLeuGluGluGlnMetGlnLysPheHisGluLysPheLysL : 250 ||| ::: !....!. !.!.:!!! !:!!! |||||||||! pLysIleSerLysLysThrProSerAsnSerAspGluCysTyrAlaLysPheLysA 1707519 : taaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAA : 1707575 251 : ysTyrValArgArgHisGlnAlaLeuIleAspTyrHisGlnLysLeuGluAsnVal : 268 !.! !:!!!:!!:!|||||||||||||||!!:||| !.!.:!!|||:!!.!.||| snCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluVal 1707576 : ATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGGTG : 1707629 269 : TyrThrThrIleMetLeuSerGlnValLeuLeuPheSerValLeuIleCysLeuPh : 287 !:! ! !.!!:!!|||:!!||||||||||||||||||:!!|||!!:|||||| PheGlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAs 1707630 : TTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGA : 1707686 288 : eGlyTyrGlnValLeu >>>> Target Intron 2 >>>> LeuAlaThrAl : 296 !|||||| !|||:!! 457 bp !! !||| pGlyTyrLeuValMet++ ++GluAspThr-- 1707687 : TGGATATTTGGTGATGgt.........................agGAAGATACT-- : 1708170 297 : aSerLeuAlaArgArgSerIlePheIlePheLeuLeuMetGlyAlaMetPheLeuL : 315 !!:!! !!:!||| !! !|||:!:|||! !|||! !|||..!:!!! !! !| -ProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnL 1708171 : -CCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAAC : 1708224 316 : euPheMetPheThrPheSerCysAsnGlyValMetGluGlnSerAspAsnValAla : 333 ||!!.|||||||||!:!||||||:!! !!:!!!!:..!:!!||| ||||||||| euLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAla 1708225 : TGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCC : 1708278 334 : ValGlyThrTyrSerAlaLeuTrpThrValMetProMetGluLysPheGlyArgMe : 352 !!.!! !|||..!..!! !|||! ! !:!!||||||!!:!:!! !|||||||| AsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMe 1708279 : AATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAAT : 1708335 353 : tLeuArgLysAspLeuIleMetValIleMetArgSerArgArgValCysCysLeuT : 371 ||||||||||||||||! !.!.|||||| ||||||||| ! !|||||||||| tLeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuT 1708336 : GCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCA : 1708392 372 : hrAlaAsnArgPhePheProIleSerLeuGluThrTyrThrLys >>>> Targe : 386 ||||| ! !!|||||||||:!:||||||||||||||||||..! hrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708393 : CTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt.......... : 1708439 387 : t Intron 3 >>>> IleLeuSerThrAlaValSerTyrPheThrLeuLeuSer : 398 759 bp |||||||||||||||!.!|||||||||||||||||| !! ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArg 1708440 : ...............agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTACGA : 1709232 399 : Lys : 399 ||| Lys 1709233 : AAA : 1709237 vulgar: AmOr78 147 399 . KQ414915.1 1706992 1709237 + 550 M 37 111 5 0 2 I 0 272 3 0 2 M 108 324 5 0 2 I 0 453 3 0 2 M 3 9 G 1 0 M 89 267 5 0 2 I 0 755 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1706993 1709237 550 + . gene_id 2 ; sequence AmOr78 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1706993 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1706993 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709237 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709237 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1706993 1709237 550 + . alignment_id 2 ; Query AmOr78 ; Align 1706993 148 111 ; Align 1707380 185 324 ; Align 1708161 293 9 ; Align 1708170 297 267 ; Align 1709196 386 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr78 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 513 Query range: 147 -> 397 Target range: 1688047 -> 1690073 148 : PheAlaIleArgSerGlyAsnAsnGluSerGluArgMetLeuProPheAsnMetTr : 166 ||| !! !!.!! !.!!...|||:!!|||!!:|||:!:|||||||||!!.||||| PheProAlaAsnMetSerArgAsnLysSerAspArgValLeuProPheLysMetTr 1688048 : TTTCCAGCAAATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTG : 1688102 167 : pLeuAspMetProLeuSerLysThrProTyrTyrGluIleThrPheLeuIleGln : 185 |:!!||| !||||||||| ! |||||||||||||||:!:! !||| !.!!||| pValAspTrpProLeuSerAspThrProTyrTyrGluLeuMetPheThrPheGln+ 1688103 : GGTCGATTGGCCGCTATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAGg : 1688159 186 : >>>> Target Intron 1 >>>> AlaMetCysValTyrTyrIleGlyIleS : 194 179 bp |||:!!||||||||| ! |||||| !: + ++AlaLeuCysValTyrGlnIleGlyAlaA 1688160 : t.........................agGCGCTGTGCGTGTATCAAATCGGCGCCG : 1688365 195 : erAsnPheCysPheAspThrValPheCysIleMetAlaValHisLeuAlaGlyGln : 212 !! !!.!!|||! !|||||| !!||||||!!::!! !:!!|||:!! ! !!||| laTyrIleCysSerAspThrPhePheCysMetLeuAsnMetHisValIleCysGln 1688366 : CCTATATCTGCTCCGACACGTTTTTCTGCATGCTGAACATGCACGTGATCTGCCAG : 1688419 213 : PheArgIleLeuGlnTyrArgPheThrLysLeuCysAspThrAspAsnGlnIleCy : 231 ||||||||||||.!.||||||.!. !!!.:!!!! ! !:!! PheArgIleLeuAsnTyrArgLeuLeuAsnMetTrp------------ProValIl 1688420 : TTCCGTATACTAAATTACAGACTGTTGAACATGTGG------------CCGGTCAT : 1688464 232 : sLysLysAsnLeuIleLeuGluGluGlnMetGlnLysPheHisGluLysPheLysL : 250 ! ! :!!... !! !:!! ||| ! ! !.!.|||! !:!! |||.!.! ! eAspGluArgThrAsnMetThrGluTyrThrAsnLysCysTyrThrLysLeuIleA 1688465 : CGACGAGCGAACGAACATGACCGAATACACGAACAAATGTTACACCAAGCTGATAG : 1688521 251 : ysTyrValArgArgHisGlnAlaLeuIleAspTyrHisGlnLysLeuGluAsnVal : 268 ! ! !:!!!:!!.!||||||:!!||||||!!:!:! ! !||||||||||||||| spCysIleLysAsnHisGlnSerLeuIleGluPheCysValLysLeuGluAsnVal 1688522 : ATTGCATCAAAAATCATCAGTCGTTGATCGAGTTCTGCGTGAAACTCGAGAACGTG : 1688575 269 : TyrThrThrIleMetLeuSerGlnValLeuLeuPheSerValLeuIleCysLeuPh : 287 |||||| !! !!!:|||.!!!!.:!!:!!:!!||||||:!!|||!!:|||!!! TyrThrLeuThrIleLeuGlyHisIleValValPheSerLeuLeuMetCysPheAs 1688576 : TACACGTTGACTATACTCGGCCACATAGTGGTCTTCAGCTTGTTGATGTGCTTCGA : 1688632 288 : eGlyTyrGlnValLeuLeu >>>> Target Intron 2 >>>> AlaThrAl : 296 ! !|||:!!|||:!!||| 816 bp |||! !!. pThrTyrGluValValLeu++ ++AlaLysVa 1688633 : CACGTACGAGGTAGTTCTGgt.........................agGCAAAGGT : 1689475 297 : aSerLeuAlaArgArgSerIlePheIlePheLeuLeuMetGlyAlaMetPheLeuL : 315 ! !! !.!!! !||| !||||||:!!|||! !:!!!!:|||::!.!..!!! : lProThrThrThrArgLeuIlePheLeuPheHisMetIleGlySerPheIleHisI 1689476 : ACCTACCACGACGCGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCaca : 1689532 316 : euPheMetPheThrPheSerCysAsnGlyValMetGluGlnSerAspAsnValAla : 333 ::......||||||::!||||||..!|||:!!!!:|||:!!||| :!!:!!||| leIlePhePheThrTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleAla 1689533 : taattttcttcacgtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCA : 1689586 334 : ValGlyThrTyrSerAlaLeuTrpThrValMetProMetGluLysPheGlyArgMe : 352 ..!!.!||||||:!!!.!:!!|||||||||:!!||||||.!.||| !!|||!:!|| ThrAlaThrTyrAlaGlyMetTrpThrValLeuProMetAsnLysValGlyLysMe 1689587 : ACAGCAACGTATGCAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAAT : 1689643 353 : tLeuArgLysAspLeuIleMetValIleMetArgSerArgArgValCysCysLeuT : 371 |:!!||| !:!!:!!! :!::!!! !:!:|||||| !!:! !||||||:!!| tIleArgGlyAsnMetLysLeuMetThrValArgSerLeuGlnProCysCysIleT 1689644 : GATACGAGGAAATATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAA : 1689700 372 : hrAlaAsnArgPhePheProIleSerLeuGluThrTyrThrLys >>>> Targe : 386 |||||..! !!|||||||||:!!||||||:!!||| !||| ! hrAlaGlyGlyPhePheProValSerLeuLysThrAlaThrAla++ 1689701 : CTGCTGGTGGATTCTTTCCTGTCTCCTTGAAAACTGCTACCGCGgt.......... : 1689747 387 : t Intron 3 >>>> IleLeuSerThrAlaValSerTyrPheThrLeuLeu : 397 293 bp :!!:!!|||:!!.!!:!!|||||||||||||||:!! ++LeuMetSerSerThrMetSerTyrPheThrLeuMet 1689748 : ...............agCTAATGAGTTCCACAATGTCGTATTTCACGCTCATG : 1690073 vulgar: AmOr78 147 397 . KQ414915.1 1688047 1690073 + 513 M 37 111 5 0 2 I 0 175 3 0 2 M 40 120 G 4 0 M 65 195 5 0 2 I 0 812 3 0 2 M 92 276 5 0 2 I 0 289 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688048 1690073 513 + . gene_id 3 ; sequence AmOr78 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688048 1688158 . + . KQ414915.1 exonerate:protein2genome:local exon 1688048 1688158 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688159 1688160 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688159 1688337 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1688336 1688337 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1688338 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688338 1688652 . + . insertions 0 ; deletions 4 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690073 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690073 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688048 1690073 513 + . alignment_id 3 ; Query AmOr78 ; Align 1688048 148 111 ; Align 1688338 185 120 ; Align 1688458 229 195 ; Align 1689469 294 276 ; Align 1690038 386 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr78 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 272 Query range: 152 -> 293 Target range: 1699040 -> 1699971 153 : GlyAsnAsnGluSerGluArgMetLeuProPheAsnMetTrpLeuAspMetProLe : 171 |||...|||...|||!!:|||:!!||||||||||||||||||:!!|||:!!||||| GlyArgAsnSerSerAspArgValLeuProPheAsnMetTrpValAspLeuProLe 1699041 : ggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTGGGTTGATTTGCCGCT : 1699095 172 : uSerLysThrProTyrTyrGluIle >>>> Target Intron 1 >>>> Th : 180 |||| !:!!||| ||||||||| 495 bp ! uSerValSerProThrTyrGluIle++ ++Ar 1699096 : GTCTGTGTCACCAACGTACGAAATAgt.........................agAG : 1699617 181 : rPheLeuIle----GlnAlaMetCysValTyrTyrIleGlyIleSerAsnPheCys : 197 !|||! !:!!####|||!.!:!!! !:!!|||:!!:!!|||:!!!!! !!.!!||| gPheCysVal####GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCys 1699618 : ATTTTGTGTTTGCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGC : 1699672 198 : PheAspThrValPheCysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLe : 216 ||||||!.!:!!!!.|||:!:||| !:!!||| !||| !|||||||||||||| PheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLe 1699673 : TTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACT : 1699729 217 : uGlnTyrArgPheThrLysLeuCysAspThrAspAsnGlnIleCysLysLysAsn< : 235 ||||||||||!!.:!!!!.||| !!||||||:!!!..:!! ! ! ! ||| uGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnG 1699730 : GCAATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATG : 1699786 236 : -><-><->LeuIleLeuGluGluGlnMetGlnLysPheHisGluLysPheLysLys : 250 ! !|||...... !:!!!!.! !:!!:!! !||||||!!. luSerSerAlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsn 1699787 : AATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAAT : 1699840 251 : TyrValArgArgHisGlnAlaLeuIleAspTyrHisGlnLysLeuGluAsnValTy : 269 ! !||||||!:!|||||| !! !||| ||| !!!.!:!|||.!..!.:!!!: CysValArgGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePh 1699841 : TGCGTACGACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATT : 1699897 270 : rThrThrIleMetLeuSerGlnValLeuLeuPheSerValLeuIleCysLeuPheG : 288 !|||..!|||:!:|||.!!!!.:!!|||:!!||||||:!!|||||||||||| !!| eThrValIleValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValG 1699898 : CACGGTCATTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTG : 1699954 289 : lyTyrGlnValLeuLeu : 293 ||!:!|||||||||:!! lyPheGlnValLeuVal 1699955 : GATTCCAAGTGCTCGTA : 1699971 vulgar: AmOr78 152 293 . KQ414915.1 1699040 1699971 + 272 M 27 81 5 0 2 I 0 491 3 0 2 M 4 12 F 0 4 M 51 153 G 0 9 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699041 1699971 272 + . gene_id 4 ; sequence AmOr78 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1699041 1699121 . + . KQ414915.1 exonerate:protein2genome:local exon 1699041 1699121 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699122 1699123 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699122 1699616 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699615 1699616 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699617 1699971 . + . KQ414915.1 exonerate:protein2genome:local exon 1699617 1699971 . + . insertions 9 ; deletions 0 ; frameshifts 4 KQ414915.1 exonerate:protein2genome:local similarity 1699041 1699971 272 + . alignment_id 4 ; Query AmOr78 ; Align 1699041 153 81 ; Align 1699617 180 12 ; Align 1699633 184 153 ; Align 1699795 235 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr78 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 247 Query range: 295 -> 389 Target range: 1712375 -> 1712657 296 : AlaSerLeuAlaArgArgSerIlePheIlePheLeuLeuMetGlyAlaMetPheLe : 314 ||||||:!!!.!!:!!:!! |||||| ||| ||| !|||..!|||! !! AlaSerValGlyLysGlnMetIlePheThrPheHisLeuAlaGlyCysMetCysGl 1712376 : GCATCTGTGGGTAAACAGAtgattttcacgtttcacctAGCGGGATGTATGTGTCA : 1712430 315 : uLeuPheMetPheThrPheSerCysAsnGlyValMetGluGlnSerAspAsnValA : 333 !|||.!.|||||||||!:!||||||:!! !!:!!!!: !:!!||| ||||||. nLeuLeuMetPheThrTyrSerCysAspCysIleIleThrGluSerLeuAsnValT 1712431 : ATTGCTGATGTTTACGTACAGCTGCGATTGTATAATAACGGAAAGTTTGAACGTGA : 1712487 334 : laValGlyThrTyrSerAlaLeuTrpThrValMetProMetGluLysPheGlyArg : 351 !!! !!.!..!|||..!!.!! !||| !! !:!!||||||...! ! |||||| hrGluAlaValTyrAspGlyProTrpProArgLeuProMetSerThrArgGlyArg 1712488 : CGGAAGCGGTGTACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGAAGA : 1712541 352 : MetLeuArgLysAspLeuIleMetValIleMetArgSerArgArgValCysCysLe : 370 |||:!!|||||||||||||||:!:||||||!!:||||||||| ! !|||||||| MetIleArgLysAspLeuIleLeuValIleIleArgSerArgValProCysCysLe 1712542 : ATGATAAGGAAGGATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTGCTT : 1712598 371 : uThrAlaAsnArgPhePheProIleSerLeuGluThrTyrThrLysIleLeuSerT : 389 |||||||!.. !!|||||| !||||||||||||||||||||||||:!!:!!..!: uThrAlaArgGlyPhePheValIleSerLeuGluThrTyrThrLysValIleAspS 1712599 : GACCGCCAGAGGATTCTTCGTAATATCTTTGGAAACGTATACGAAGGTAATTGACT : 1712655 390 : hr : 389 !! er 1712656 : CT : 1712657 vulgar: AmOr78 295 389 . KQ414915.1 1712375 1712657 + 247 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712376 1712657 247 + . gene_id 5 ; sequence AmOr78 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1712376 1712657 . + . KQ414915.1 exonerate:protein2genome:local exon 1712376 1712657 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712376 1712657 247 + . alignment_id 5 ; Query AmOr78 ; Align 1712376 296 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr78 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 245 Query range: 298 -> 392 Target range: 1702974 -> 1703256 299 : AlaArgArgSerIlePheIlePheLeuLeuMetGlyAlaMetPheLeuLeuPheMe : 317 ||||||||| !! !|||:!!|||! !:!!:!:|||::!:!:! !! !|||!!.:! AlaArgArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLeuLe 1702975 : GCGAGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATTGCT : 1703029 318 : tPheThrPheSerCysAsnGlyValMetGluGlnSerAspAsnValAlaValGlyT : 336 :||||||!:!||||||:!!|||:!!!!:|||:!!||| |||:!!!.!..!!.!! uPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaI 1703030 : ATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGA : 1703086 337 : hrTyrSerAlaLeuTrpThrValMetProMetGluLysPheGlyArgMetLeuArg : 354 !||| !!.!! !|||! ! !:!!||||||!!:||| !||||||! !|||||| leTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArg 1703087 : TATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGA : 1703140 355 : LysAspLeuIleMetValIleMetArgSerArgArgValCysCysLeuThrAlaAs : 373 !:!||||||! !|||||||||:!:|||||||||!:! ! !!||||||||||||!: ArgAspLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSe 1703141 : AGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAG : 1703197 374 : nArgPhePheProIleSerLeuGluThrTyrThrLysIleLeuSerThrAlaValS : 392 ! !!|||||||||:!!||||||||||||! !|||! !:!!!!!!:! !:!! !!| rGlyPhePheProValSerLeuGluThrCysThrThrValPheAsnPheSerPheS 1703198 : CGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATTTCTCATTCT : 1703254 393 : er : 392 || er 1703255 : CT : 1703256 vulgar: AmOr78 298 392 . KQ414915.1 1702974 1703256 + 245 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702975 1703256 245 + . gene_id 6 ; sequence AmOr78 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702975 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1702975 1703256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702975 1703256 245 + . alignment_id 6 ; Query AmOr78 ; Align 1702975 299 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr78 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 221 Query range: 143 -> 223 Target range: 1711216 -> 1712002 144 : LeuMetThrProPheAlaIleArgSerGlyAsnAsnGluSerGluArgMetLeuPr : 162 ||| |||! ! !!:!!:!:!.!! !|||!..|||||||||!!:|||!!:||||| LeuAspThrArgValSerValAsnIleGlyArgAsnGluSerAspArgIleLeuPr 1711217 : CTCGATACTCGTGTTTCAGTGAATATTGGAAGAAACGAATCCGACAGAATACTGCC : 1711271 163 : oPheAsnMetTrpLeuAspMetProLeuSerLysThrProTyrTyrGluIleThrP : 181 ||||!!.||||||:!!|||!!:||| !|||! !|||||||||:::|||||| | oPheLysMetTrpIleAspIleProThrSerMetThrProTyrPheGluIlePheP 1711272 : GTTTAAAATGTGGATTGATATACCGACATCGATGACACcgtattttgaaatattct : 1711328 182 : heLeuIleGln >>>> Target Intron 1 >>>> AlaMetCysValTyrT : 190 || :!!||| 546 bp !.!:!:! !!.!||| heThrLeuGln++ ++ValLeuSerAlaTyrG 1711329 : tcaccTTACAGgt.........................agGTTTTATCCGCGTATC : 1711901 191 : yrIleGlyIleSerAsnPheCysPheAspThrValPheCysIleMetAlaValHis : 208 ! ||||||:!:||| !! !|||||||||!.!|||.!.||||||||| !:!!||| lnIleGlyValSerTyrGlyCysPheAspAsnValLeuCysIleMetAsnLeuHis 1711902 : AAATTGGCGTGAGTTACGGTTGCTTCGACAACGTTCTATGCATCATGAACCTACAC : 1711955 209 : LeuAlaGlyGlnPheArgIleLeuGlnTyrArgPheThrLysLeu : 223 |||||| !||||||||||||||||||:!!|||.!...!!!.:!! LeuAlaThrGlnPheArgIleLeuGlnHisArgLeuValAsnIle 1711956 : TTGGCCACTCAGTTTCGAATACTGCAACATAGACTGGTGAATATA : 1712002 vulgar: AmOr78 143 223 . KQ414915.1 1711216 1712002 + 221 M 41 123 5 0 2 I 0 542 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711217 1712002 221 + . gene_id 7 ; sequence AmOr78 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1711217 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711217 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712002 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712002 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711217 1712002 221 + . alignment_id 7 ; Query AmOr78 ; Align 1711217 144 123 ; Align 1711886 185 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr78 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 215 Query range: 183 -> 293 Target range: 1702013 -> 1702352 184 : GlnAlaMetCysValTyrTyrIleGlyIleSerAsnPheCysPheAspThrValPh : 202 |||!.!:!!! !:!!|||:!!:!!|||:!!!!! !!.!!|||||||||!.!:!!!! GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 203 : eCysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeuGlnTyrArgPheT : 221 .|||:!:||| !:!!||| !||| !||||||||||||||||||||||||!!.: uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 222 : hrLysLeuCysAspThrAspAsnGlnIleCysLysLysAsn<-><-><->LeuIle : 236 !!!!.||| !!||||||:!!!..:!! ! ! ! ||| ! ! erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1702179 237 : LeuGluGluGlnMetGlnLysPheHisGluLysPheLysLysTyrValArgArgHi : 255 |||...... !:!!!!.! !:!!:!! !||||||!!.! !||||||!:!|| LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHi 1702180 : CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACA : 1702236 256 : sGlnAlaLeuIleAspTyrHisGlnLysLeuGluAsnValTyrThrThrIleMetL : 274 |||| !! !||| ||| !!!.!:!|||.!..!.:!!!:!|||..!|||:!:| sGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValL 1702237 : TCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTAC : 1702293 275 : euSerGlnValLeuLeuPheSerValLeuIleCysLeuPheGlyTyrGlnValLeu : 292 ||.!!!!.:!!|||:!!||||||:!!|||||||||||| !!|||!:!||||||||| euGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeu 1702294 : TCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTC : 1702347 293 : Leu : 293 :!! Val 1702348 : GTG : 1702352 vulgar: AmOr78 183 293 . KQ414915.1 1702013 1702352 + 215 M 51 153 G 0 9 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1702352 215 + . gene_id 8 ; sequence AmOr78 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702014 1702352 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702352 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1702352 215 + . alignment_id 8 ; Query AmOr78 ; Align 1702014 184 153 ; Align 1702176 235 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr78 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 195 Query range: 297 -> 397 Target range: 1682550 -> 1683048 298 : LeuAlaArgArgSerIlePheIlePheLeuLeuMetGlyAlaMetPheLeuLeuPh : 316 ||| !!:!|||! !:!:|||:!! !! !!!!:!:|||!.!:!!.!. :::|| LeuMetLysArgLeuLeuPheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePh 1682551 : TTGATGAAACGATTGTTGTTCCTAAATTACTTTCTCGGTGGAGTGATacagatatt : 1682605 317 : eMetPheThrPheSerCysAsnGlyValMetGluGlnSerAspAsnValAlaValG : 335 |:::...|||.!.!:!||||||! !:!!||||||||||||! ! !:!!!.!..!! eLeuIleThrLeuAsnCysAsnAspIleMetGluGlnSerGlyAlaIleGlyThrA 1682606 : tttaataacccTAAATTGCAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAG : 1682662 336 : lyThrTyrSerAlaLeuTrpThrValMetProMetGluLysPheGlyArgMetLeu : 353 .!! !||||||..! !||| ! !! ... ||| ..!!!! laIleTyrSerCysAsnTrpGluArgAsnValTyrAsnHisPhe---TyrGlnPhe 1682663 : CGATCTACAGTTGTAATTGGGAGAGGAAtgtttataatcatttt---taccAGTTC : 1682713 354 : ArgLysAspLeuIleMetValIleMetArgSerArgArgValCysCysLeuThrAl : 372 |||||||||:!!!!:!!:|||!!::!:|||:!!!:!||| !|||! !:!!:!!|| ArgLysAspMetMetIleValMetValArgAlaLysArgProCysTyrIleSerAl 1682714 : AGAAAGGATATGATGATTGTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGC : 1682770 373 : aAsnArgPhePheProIleSerLeuGluThrTyrThrLys >>>> Target In : 386 | !:!|||||||||||||||||||||:!!!:!|||||| 201 aAlaLysPhePheProIleSerLeuGluSerPheThrLys++ 1682771 : AGCGAAATTCTTTCCAATCTCCCTTGAATCGTTCACGAaggt.............. : 1682814 387 : tron 1 >>>> IleLeuSerThrAlaValSerTyrPheThrLeuLeu : 397 bp :!:||||||.!!.!!!.!||||||!:!||||||||| ++ValLeuSerAlaThrAlaSerTyrTyrThrLeuLeu 1682815 : ...........agGTGTTAAGTGCAACAGCATCTTATTATACACTGCTG : 1683048 vulgar: AmOr78 297 397 . KQ414915.1 1682550 1683048 + 195 M 52 156 G 1 0 M 35 105 5 0 2 I 0 197 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682551 1683048 195 + . gene_id 9 ; sequence AmOr78 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1682551 1682811 . + . KQ414915.1 exonerate:protein2genome:local exon 1682551 1682811 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1682812 1682813 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1682812 1683012 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1683011 1683012 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1683013 1683048 . + . KQ414915.1 exonerate:protein2genome:local exon 1683013 1683048 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1682551 1683048 195 + . alignment_id 9 ; Query AmOr78 ; Align 1682551 298 156 ; Align 1682707 351 105 ; Align 1683013 386 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr78 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 152 -> 217 Target range: 1681731 -> 1682049 153 : GlyAsnAsnGluSerGluArgMetLeuProPheAsnMetTrpLeu<->AspMetPr : 170 |||!!.!:!!!:..!||||||!!:||||||||| .!. ! :!! :!!:!!|| GlyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAsnLeuPr 1681732 : GGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAACTTGCC : 1681786 171 : oLeuSerLysThrProTyrTyrGluIleThrPheLeuIleGln >>>> Target : 185 | !||| !|||||||||||||||||| |||:!!|||:!! 1 oThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681787 : TACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt........... : 1681833 186 : Intron 1 >>>> AlaMetCysValTyrTyrIleGlyIleSerAsnPheCysP : 198 20 bp .!!:!:! !||| :!! ||||||!!! !! !|||| ++ThrLeuSerValValHisSerGlyIleCysPheCysCysP 1681834 : ..............agACATTATCTGTGGTGCATTCGGGAATTTGTTTCTGTTGTT : 1681990 199 : heAspThrValPheCysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeu : 216 |||||!.! !!.!.||||||:!!::!:!!|||:!!!.!|||||||||!:!|||||| heAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLysIleLeu 1681991 : TCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAGATTTTA : 1682044 217 : Gln : 217 ||| Gln 1682045 : CAA : 1682049 vulgar: AmOr78 152 217 . KQ414915.1 1681731 1682049 + 155 M 15 45 G 0 3 M 17 51 5 0 2 I 0 116 3 0 2 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681732 1682049 155 + . gene_id 10 ; sequence AmOr78 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681732 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681732 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682049 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682049 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681732 1682049 155 + . alignment_id 10 ; Query AmOr78 ; Align 1681732 153 45 ; Align 1681780 168 51 ; Align 1681951 185 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr78 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 0 -> 61 Target range: 1685751 -> 1685934 1 : MetGlnSerGluAsnGlnLeuAspValSerIleThrLeuSerThrPhePheLeuAr : 19 ||||||:!! !!!. ! !|||:!!|||:!!! ... |||...|||:: MetGlnAlaThrLysTyrArgAspIleSerLeuLysCysGlyIlePheLeuLeuLy 1685752 : ATGCAGGCGACAAAATACAGGGATATTTCCCTCAAgtgtggaatttttcttttgaa : 1685806 20 : gAsnIleGlyLeuTrpMetSerAspAspProGlyGluGlnArgArgMetArgIleL : 38 : ::!||||||||||||||| :!! !! !|||:!!||||||! !|||.!! sLeuValGlyLeuTrpMetSerMetAsnSerValGluGluArgArgArgArgPheT 1685807 : attagtCGGCCTCTGGATGTCCATGAACAGCGTCGAGGAGCGTCGAAGGAGGTTCA : 1685863 39 : euLeuValTyrThrValTrpIleLeuLeuLeuGlyMetIleIleAsnGlyArgAsp : 56 !||| !! :!!|||!:: !|||! !! !|||:!: !:!:|||! !!.!||| hrLeuPheGlySerValPheAlaLeuSerTyrGlyValTyrValAsnValAsnAsp 1685864 : CGTTGTTCGGATCAGTTTTCGCCCTTTCTTACGGCGTTTACGTGAACGTAAACGAT : 1685917 57 : LeuTyrPheThrPhe : 61 :!! ! !!:!||| IleLeuHisSerPhe 1685918 : ATTCTTCACAGCTTC : 1685934 vulgar: AmOr78 0 61 . KQ414915.1 1685751 1685934 + 106 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1685752 1685934 106 + . gene_id 11 ; sequence AmOr78 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1685752 1685934 . + . KQ414915.1 exonerate:protein2genome:local exon 1685752 1685934 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1685752 1685934 106 + . alignment_id 11 ; Query AmOr78 ; Align 1685752 1 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr63 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 376 Query range: 182 -> 397 Target range: 806514 -> 807596 183 : MetProGluAsnMetTyrPheLeuIlePheIleValGluTyrLeuMetLeuLeuLeuT : 202 :!:||| !.!. :!! !!! !:!:!!.:!::!!:!! :!! :!!!!!!!!! LeuProLeuGlnHisHisValCysValLeuLeuLeuGlnGlyMetHisIlePhePheA 806515 : TTACCGTTGCAGCATCACGTCTGCGTGTTACTGCTGCAAGGGATGCACATTTTCTTCA : 806572 203 : hrThrThrGlyAsnLeuGlySerAspSerLeuPhePheSerIleValPheHisLeuCy : 221 .!.!!..!!.!:!!! !|||!:!|||.!!||||||||||||:!:..!.!.|||||||| snAlaValAlaHisCysGlyAsnAspGlyLeuPhePheSerLeuThrMetHisLeuCy 806573 : ACGCCGTGGCTCACTGCGGCAACGACGGCCTCTTCTTCAGCCTGACGATGCATCTGTG : 806629 222 : sGlyGlnValGluIleLeuArgLeuGluTyrAsnLysLeuSerAsnGluAsnGluArg : 240 ||||||| !!|||||||||!:!:!!.!. :!!:!!..! !||| ! sGlyGlnPheGluIleLeuLysMetAsnLeuAlaGluIleGluPheGluAlaIleAla 806630 : CGGTCAGTTTGAAATTCTGAAGATGAATCTGGCGGAGATCGAGTTCGAGGCGATCGCT : 806686 241 : ThrThrLysHisIleThrLeuLeuIleLysArgHisIleTyrLeuLeuLysLeuGlyA : 260 ! !|||!..||| !:!!|||:!:||||||||| ! ! ||| ! !||| !: CysArgLysArgIleGlyValLeuValLysArgHisCysLysLeuAlaValLeuThrA 806687 : TGTCGGAAGCGAATCGGCGTTCTCGTGAAACGACACTGCAAACTGGCGGTGTTGACCA : 806746 261 : spMetLeuAsnLysThrIleSerSerIleLeuIleValGlnLeuSerSerSerCysMe : 279 !! |||.!.:!!!:!.!!|||! !|||:!!:!:|||||||||! !! !|||...:! snAspLeuGluGlnSerPheSerMetIleIleLeuValGlnLeuMetMetSerAlaLe 806747 : ACGATCTCGAGCAGAGCTTCAGTATGATTATTCTGGTGCAACTCATGATGAGTGCGTT : 806803 280 : tLeuIleCysThrThr{G} >>>> Target Intron 1 >>>> {ly}PheGlu : 287 !|||||||||..! !{|} 437 bp {||}|||! uLeuIleCysValGlu{G}++ ++{ly}PheVal 806804 : GCTAATTTGCGTAGAA{G}gt.........................ag{GT}TTCGTC : 807264 288 : PheIleLeuAlaLeuSerIleGlyAsnIleValMetIleValLysThrPheAlaValI : 307 |||:!::!!|||||||||! !:!!! !||| !:!!!:!!:!|||!.!:!!! PheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuM 807265 : TTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGA : 807324 308 : leCysValLeuLeuIleGlnLeuPheAlaTyrSerTyrValGlyGluTyrLeuLysTh : 326 !: ..!|||||||||||||||!:! !|||:!!|||!.!|||.!. |||:!!:! etValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSe 807325 : TGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTC : 807381 327 : rGlnThrGluGlyLeuGlyAsnSerIleTyrPheCysThrTrpTyrAspMetProLys : 345 !!:!||||||! !:!!!.!.!.:!! !||| !! ! !|||||| ! ! ! ! rArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGly 807382 : GCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGG : 807438 346 : AsnValSerHisAsnIleThrPheIleIleMetArgAlaGlnHisProValLeuLeuT : 365 :!!!.!:!!...:!!:!! !!!.|||||| |||!.!.!. ||| !! !:!!| HisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleT 807439 : CACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAA : 807498 366 : hrAlaGlyLysPhePheValIleAsnMetGluThrTyrMetSerIleLeuArgIleSe : 384 |||||||||||||| !! !!!:|||:!: |||!:!! !..!||||||!:! !|| hrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSe 807499 : CAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTC : 807555 385 : rMetSerTyrLeuSerValLeuArgValMetValAsnSer : 397 | |||||||||||||||:!!!:!||||||:!!:!!:!! rGlySerTyrLeuSerValMetLysValMetMetAspAla 807556 : TGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGACGCA : 807596 vulgar: AmOr63 182 397 . KQ414940.1 806514 807596 + 376 M 102 306 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 112 336 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806515 807596 376 + . gene_id 1 ; sequence AmOr63 ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 806515 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806515 806821 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807258 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807596 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807596 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 806515 807596 376 + . alignment_id 1 ; Query AmOr63 ; Align 806515 183 306 ; Align 807261 286 336 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr73 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 274 -> 360 Target range: 807323 -> 807581 275 : LeuCysCysMetLeuMetGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrL : 294 :!! !:!!|||!!:|||:!!|||||||||..!!:: |||||| !:!! !! MetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluS 807324 : ATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGT : 807381 295 : euLysSerAsnLysValSerAspAlaIleTyrGluMetAspTrpThrIleLeuProSe : 313 !::!!!!.!.:!!:!!:!!.!.||| !|||!!: !||| ! !! !! !.! erArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGl 807382 : CGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGG : 807438 314 : rAsnValMetLysAspLeuLeuLeuValIleAlaArgSerLysLysProValLysIle : 332 !:!!!.! !:!||||||||||||:!!||| !|||.!!!!...!||| !:::||| yHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIle 807439 : GCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATA : 807495 333 : ThrSerGlyGlnIlePheIleLeuSerThrGluSerPheMetLysIleMetLysIleS : 352 |||:!!|||:!!.!! !! :!!!:! ! !!!|||! !:!!|||:!!||| !| ThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaS 807496 : ACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTT : 807555 353 : erTyrSerSerPheAsnIleLeuLys : 360 || !|||! !.!.::!:!!:!!||| erGlySerTyrLeuSerValMetLys 807556 : CTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: AmOr73 274 360 . KQ414940.1 807323 807581 + 139 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807324 807581 139 + . gene_id 1 ; sequence AmOr73 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807324 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807324 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807324 807581 139 + . alignment_id 1 ; Query AmOr73 ; Align 807324 275 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr73 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 297 -> 345 Target range: 4372 -> 4228 298 : LysValSerAspAlaIleTyrGluMetAspTrpThrIleLeuProSerAsnValMetLysAs : 318 ||||||.!!!!:!.!:!!||| !! |||||| ! !||||||..!!.. !!!: || LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAs 4372 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGA : 4312 319 : pLeuLeuLeuValIleAlaArgSerLysLysProValLysIleThrSerGlyGlnIlePheI : 339 ||||:!!|||:!!|||.!!||||||!!. ! !|||:!!||||||:::|||:::|||||| pLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLysIlePheH 4311 : TTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaaaatattcc : 4249 340 : leLeuSerThrGluSerPhe : 345 :::||| ! ! !!!||| isMetSerLeuTyrThrPhe 4248 : atatgTCGCTTTACACGTTC : 4229 vulgar: AmOr73 297 345 . LHQN01027980.1 4372 4228 - 106 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4229 4372 106 - . gene_id 1 ; sequence AmOr73 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4229 4372 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4229 4372 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4229 4372 106 - . alignment_id 1 ; Query AmOr73 ; Align 4373 298 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr86 Target: LHQN01036086.1 Habropoda laboriosa contig36086, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 87 -> 151 Target range: 0 -> 192 88 : PheIleArgArgThrGluPheLysAsnLeuIleLeuPheAlaArgLysAsnPheTrpHisLeuA : 109 !:!! !.!|||! !|||||| ! ...|||||| !|||.!!!:!:!!!!.|||||||||!!!: TyrLysHisArgIleGluPheTyrGlyLeuIleArgPheThrGlnGluLysPheTrpHisPheA 1 : TACAAGCACAGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAGAGAAATTCTGGCATTTCA : 64 110 : spTyrAspArgHisGluThrIleLeuPheThrLysCysArgLysPheCysThrLeuTrpThrLe : 130 !!|||:!! !!..|||! !:!!:!!!!.:!!:!!|||!:!|||.!.||||||:!!!::! !:! snTyrAsnSerArgGluLysLeuIleLeuSerGluCysLysLysIleCysThrValPheIleVa 65 : ACTATAATTCACGGGAGAAGTTAATTTTATCCGAGTGCAAGAAGATATGTACCGTTTTCATCGT : 127 131 : uThrValPheSerPheThrGlnAlaSerLeuThrPheTyrIleIleThrProIleCysAlaAsn : 151 !.!! !! !! !! !||||||!.!!!!! !.!! !|||:!!:!:|||||||||! ...||| lAlaPheSerPheCysThrGlnGlyThrCysAlaGlyTyrValValThrProIleLeuGlyAsn 128 : TGCCTTCAGCTTCTGTACACAGGGCACGTGTGCTGGTTACGTAGTGACACCTATTTTAggtaat : 190 vulgar: AmOr86 87 151 . LHQN01036086.1 0 192 + 136 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01036086.1 exonerate:protein2genome:local gene 1 192 136 + . gene_id 1 ; sequence AmOr86 ; gene_orientation . LHQN01036086.1 exonerate:protein2genome:local cds 1 192 . + . LHQN01036086.1 exonerate:protein2genome:local exon 1 192 . + . insertions 0 ; deletions 0 LHQN01036086.1 exonerate:protein2genome:local similarity 1 192 136 + . alignment_id 1 ; Query AmOr86 ; Align 1 88 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr74FIX Target: LHQN01036086.1 Habropoda laboriosa contig36086, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 90 -> 151 Target range: 9 -> 192 91 : ArgIleGluPheSerArgIleValSerTyrAlaGlnLysHisPheTrpArgLeuAspTyrAspT : 112 ||||||||||||! ! !!:!!:!!!!!!:!.!!|||:!! ! ||||||!.!!!!:!!|||:!!! ArgIleGluPheTyrGlyLeuIleArgPheThrGlnGluLysPheTrpHisPheAsnTyrAsnS 10 : AGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAGAGAAATTCTGGCATTTCAACTATAATT : 73 113 : yrAspGluLysIleLeuPheGlyGluCysGlnLysPheCysArgLeuTrpIleIleValValSe : 133 ||||||:!!:!!!!...!||||||:!!|||.!.|||! !:!!!::|||:!!!.! !!|| erArgGluLysLeuIleLeuSerGluCysLysLysIleCysThrValPheIleValAlaPheSe 74 : CACGGGAGAAGTTAATTTTATCCGAGTGCAAGAAGATATGTACCGTTTTCATCGTTGCCTTCAG : 136 134 : rMetIleSerGlnSerSerLeuAlaPheTyrIleIleThrProIleTyrGluAsn : 151 |.!. !!!!|||.!!!!!! !||| !|||:!!:!:|||||||||! ||| rPheCysThrGlnGlyThrCysAlaGlyTyrValValThrProIleLeuGlyAsn 137 : CTTCTGTACACAGGGCACGTGTGCTGGTTACGTAGTGACACCTATTTTAggtaat : 192 vulgar: AmOr74FIX 90 151 . LHQN01036086.1 9 192 + 142 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01036086.1 exonerate:protein2genome:local gene 10 192 142 + . gene_id 1 ; sequence AmOr74FIX ; gene_orientation . LHQN01036086.1 exonerate:protein2genome:local cds 10 192 . + . LHQN01036086.1 exonerate:protein2genome:local exon 10 192 . + . insertions 0 ; deletions 0 LHQN01036086.1 exonerate:protein2genome:local similarity 10 192 142 + . alignment_id 1 ; Query AmOr74FIX ; Align 10 91 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr92PSE Target: LHQN01040768.1 Habropoda laboriosa contig40768, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 308 -> 341 Target range: 117 -> 216 309 : LeuSerCysLeuCysGlnLeuLeuMetPheSerTyrSerCysAspCysIleLeuArgGluSerV : 330 :!!!!! !!:!! !!||||||! !||||||!!!|||||||||||||||||| !! !||||||: MetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerL 118 : ATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCC : 181 331 : alSerValAlaThrAlaAlaTyrGluGlyProTrp : 341 !!!:!:!!||| !:!!!.!|||! ||||||||| euAsnIleAlaGluSerValTyrAlaGlyProTrp 182 : TGAACATCGCTGAATCTGTATACGCTGGACCATGG : 216 vulgar: AmOr92PSE 308 341 . LHQN01040768.1 117 216 + 104 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01040768.1 exonerate:protein2genome:local gene 118 216 104 + . gene_id 1 ; sequence AmOr92PSE ; gene_orientation . LHQN01040768.1 exonerate:protein2genome:local cds 118 216 . + . LHQN01040768.1 exonerate:protein2genome:local exon 118 216 . + . insertions 0 ; deletions 0 LHQN01040768.1 exonerate:protein2genome:local similarity 118 216 104 + . alignment_id 1 ; Query AmOr92PSE ; Align 118 309 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: LHQN01044749.1 Habropoda laboriosa contig44749, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 302 -> 347 Target range: 136 -> 1 303 : ArgValIlePheThrPheHisLeuMetGlyCysMetCysGlnLeuLeuMetPheThrTyrSerC : 324 |||||| !!!..!!! ! !|||||| ! !!:!! !!||||||! !|||||||||||||||| ArgValAlaLeuAlaCysPheLeuMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerC 136 : CGCGTTGCTTTGGCGTGCTTCTTGATGACGGGCGTGAGTCAACTATGGATGTTCACGTATAGTT : 73 325 : ysAspCysLeuMetHisAspSerMetSerValAlaAsnAlaAlaTyrAsnSerLeuTrpProCy : 345 |||||||||||! !!:|||:!!!:!:!!|||.!.:!!!.!||| !.!!! !||| ! ysAspCysLeuThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAs 72 : GCGATTGCCTAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAA : 10 346 : sLeuPro : 347 !|||||| nLeuPro 9 : TTTACCA : 2 vulgar: AmOr88 302 347 . LHQN01044749.1 136 1 - 103 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01044749.1 exonerate:protein2genome:local gene 2 136 103 - . gene_id 1 ; sequence AmOr88 ; gene_orientation . LHQN01044749.1 exonerate:protein2genome:local cds 2 136 . - . LHQN01044749.1 exonerate:protein2genome:local exon 2 136 . - . insertions 0 ; deletions 0 LHQN01044749.1 exonerate:protein2genome:local similarity 2 136 103 - . alignment_id 1 ; Query AmOr88 ; Align 137 303 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: LHQN01044749.1 Habropoda laboriosa contig44749, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 304 -> 349 Target range: 136 -> 1 305 : ArgLeuIlePheThrPheHisLeuIleSerCysMetCysGlnLeuLeuMetPheThrTyrSerC : 326 |||:!! !!!..!!! ! !|||!!:!!! !!:!! !!||||||! !|||||||||||||||| ArgValAlaLeuAlaCysPheLeuMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerC 136 : CGCGTTGCTTTGGCGTGCTTCTTGATGACGGGCGTGAGTCAACTATGGATGTTCACGTATAGTT : 73 327 : ysAspCysLeuIleArgAspSerThrAsnIleAlaAsnAlaThrTyrAsnSerLeuTrpSerPh : 347 |||||||||||! !! !!!:||| !|||||||||.!.:!!..!||| !.!!! !|||! ! ysAspCysLeuThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAs 72 : GCGATTGCCTAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAA : 10 348 : eMetPro : 349 !:!:||| nLeuPro 9 : TTTACCA : 2 vulgar: AmOr85 304 349 . LHQN01044749.1 136 1 - 102 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01044749.1 exonerate:protein2genome:local gene 2 136 102 - . gene_id 1 ; sequence AmOr85 ; gene_orientation . LHQN01044749.1 exonerate:protein2genome:local cds 2 136 . - . LHQN01044749.1 exonerate:protein2genome:local exon 2 136 . - . insertions 0 ; deletions 0 LHQN01044749.1 exonerate:protein2genome:local similarity 2 136 102 - . alignment_id 1 ; Query AmOr85 ; Align 137 305 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: LHQN01044749.1 Habropoda laboriosa contig44749, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 285 -> 344 Target range: 178 -> 1 286 : AspGlyTyrLeuIleLeuMetGluGluThrProPheGlyArgArgValThrPheThrPheHisI : 307 ||| !||| ! ! !..!.!.:!! ! !!|||! ! !!||||||.!!!!..!!! ! !: AspMetTyrAsnGlyThrGlnAsnLysLeuSerPheGluTrpArgValAlaLeuAlaCysPheL 178 : GATATGTATAATGGCACACAGAATAAGTTATCATTTGAATGGCGCGTTGCTTTGGCGTGCTTCT : 115 308 : leThrGlyCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgAspSe : 328 !:! ! ! !!:!! !!||||||! !|||||||||||||||||||||||||||! !! !!!:|| euMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysLeuThrThrGluSe 114 : TGATGACGGGCGTGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCCTAACAACAGAAAG : 52 329 : rMetAspIleAlaAspAlaAlaTyrAsnCysSerTrpSerPheLeuPro : 344 |:!!:!!||||||!!::!!!.!||| ! ! !!|||! ! !|||||| rLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuPro 51 : CCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCA : 2 vulgar: AmOr76 285 344 . LHQN01044749.1 178 1 - 102 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01044749.1 exonerate:protein2genome:local gene 2 178 102 - . gene_id 1 ; sequence AmOr76 ; gene_orientation . LHQN01044749.1 exonerate:protein2genome:local cds 2 178 . - . LHQN01044749.1 exonerate:protein2genome:local exon 2 178 . - . insertions 0 ; deletions 0 LHQN01044749.1 exonerate:protein2genome:local similarity 2 178 102 - . alignment_id 1 ; Query AmOr76 ; Align 179 286 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr92PSE Target: LHQN01044749.1 Habropoda laboriosa contig44749, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 300 -> 341 Target range: 136 -> 13 301 : ArgSerIlePheSerPheHisIleLeuSerCysLeuCysGlnLeuLeuMetPheSerTyrSerC : 322 ||| ! !!!.:!!! ! !:!::!!!!! !!:!! !!||||||! !||||||!!!||||||| ArgValAlaLeuAlaCysPheLeuMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerC 136 : CGCGTTGCTTTGGCGTGCTTCTTGATGACGGGCGTGAGTCAACTATGGATGTTCACGTATAGTT : 73 323 : ysAspCysIleLeuArgGluSerValSerValAlaThrAlaAlaTyrGluGlyProTrp : 341 ||||||||:!! !! !||||||:!!!:!:!!||| !:!!!.!|||! ||||||||| ysAspCysLeuThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrp 72 : GCGATTGCCTAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGG : 14 vulgar: AmOr92PSE 300 341 . LHQN01044749.1 136 13 - 104 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01044749.1 exonerate:protein2genome:local gene 14 136 104 - . gene_id 1 ; sequence AmOr92PSE ; gene_orientation . LHQN01044749.1 exonerate:protein2genome:local cds 14 136 . - . LHQN01044749.1 exonerate:protein2genome:local exon 14 136 . - . insertions 0 ; deletions 0 LHQN01044749.1 exonerate:protein2genome:local similarity 14 136 104 - . alignment_id 1 ; Query AmOr92PSE ; Align 137 301 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr82 Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 180 -> 218 Target range: 306 -> 420 181 : LeuIleGlnAlaMetCysValTyrTyrIleGlyValAlaSerPheCysPheAspAsnIlePheC : 202 |||! ||||||:!:! !|||||| ! :!!..!|||..!! !.!!|||||||||||||||||| LeuThrGlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePheP 307 : ctCACGCAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttt : 370 203 : ysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeuGlnTyrArg : 218 ||||||..!:!!|||:!!|||||||||||||||||||||||||||||| heIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 371 : tcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: AmOr82 180 218 . LHQN01049471.1 306 420 + 133 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 307 420 133 + . gene_id 1 ; sequence AmOr82 ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 307 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 307 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 307 420 133 + . alignment_id 1 ; Query AmOr82 ; Align 307 181 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr80 Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 181 -> 219 Target range: 306 -> 420 182 : LeuIleGlnAlaThrCysValTyrTyrValGlyIleSerTyrPheCysPheAspAsnIlePheC : 203 |||! |||||| !! !|||||| ! |||..!:!:!!!|||.!!|||||||||||||||||| LeuThrGlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePheP 307 : ctCACGCAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttt : 370 204 : ysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeuArgTyrArg : 219 ||||||..!:!!|||:!!|||||||||||||||||||||!:!|||||| heIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 371 : tcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: AmOr80 181 219 . LHQN01049471.1 306 420 + 134 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 307 420 134 + . gene_id 1 ; sequence AmOr80 ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 307 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 307 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 307 420 134 + . alignment_id 1 ; Query AmOr80 ; Align 307 182 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr92PSE Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 177 -> 215 Target range: 306 -> 420 178 : ValLeuZedValLeuSerLeuTyrGlnIleAlaValSerTyrPheCysPheAspAsnPheLeuC : 199 ::! !:::!.!||||||:!!||||||:!! !|||!!!|||.!!||||||||||||...... LeuThrGlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePheP 307 : ctCACGCAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttt : 370 200 : ysIleMetAsnPheHisValAlaGlyGlnPheLysValLeuGlnHisArg : 215 |||||| !.!.||||||||||||||||||::::!!||||||:!!||| heIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 371 : tcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: AmOr92PSE 177 215 . LHQN01049471.1 306 420 + 120 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 307 420 120 + . gene_id 1 ; sequence AmOr92PSE ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 307 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 307 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 307 420 120 + . alignment_id 1 ; Query AmOr92PSE ; Align 307 178 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr89 Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 184 -> 220 Target range: 312 -> 420 185 : GlnIleMetThrPheTyrPheIleGlyIleSerTyrPheCysPheAspAsnIlePheCysIleM : 206 ||| !:!::!! ! ||| :!!..!:!:!!!|||.!!|||||||||||||||||| |||| GlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePhePheIleM 313 : CAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttttcatta : 376 207 : etThrValHisLeuAlaGlyGlnPheGlnIleLeuArgHisArg : 220 || !:!!|||:!!||||||||||||!::||||||!:!:!!||| etCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 377 : tgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: AmOr89 184 220 . LHQN01049471.1 312 420 + 113 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 313 420 113 + . gene_id 1 ; sequence AmOr89 ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 313 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 313 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 313 420 113 + . alignment_id 1 ; Query AmOr89 ; Align 313 185 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr85 Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 174 -> 221 Target range: 279 -> 420 175 : MetThrProTyrPheGluMetValPheIleIleGluIleLeuSerLeuTyrHisValGlyValC : 196 |||! !||| ::: ::: ::!! :!! !||||||:!!|||!!.|||..!|||| MetIleProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValAsnValC 280 : ATGATTCCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTAACGTGT : 343 197 : ysTyrLeuTyrPheAspAsnPheMetCysIleIleAsnLeuHisIleAlaGlyGlnPheArgIl : 217 ||||||||! !|||||||||...... |||::: !||||||:!:||||||||||||||||| ysTyrLeuCysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArgIl 344 : GTTACCTTTGCTtcgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTAT : 406 218 : eLeuGlnHisArg : 221 |||||||:!!||| eLeuGlnTyrArg 407 : ACTACAATACAGA : 420 vulgar: AmOr85 174 221 . LHQN01049471.1 279 420 + 128 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 280 420 128 + . gene_id 1 ; sequence AmOr85 ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 280 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 280 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 280 420 128 + . alignment_id 1 ; Query AmOr85 ; Align 280 175 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr78 Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 181 -> 219 Target range: 306 -> 420 182 : LeuIleGlnAlaMetCysValTyrTyrIleGlyIleSerAsnPheCysPheAspThrValPheC : 203 |||! ||||||:!:! !|||||| ! :!!..!:!:!!! !!.!!|||||||||...:::||| LeuThrGlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePheP 307 : ctCACGCAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttt : 370 204 : ysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeuGlnTyrArg : 219 ||||||..!:!!|||:!!|||||||||||||||||||||||||||||| heIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 371 : tcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: AmOr78 181 219 . LHQN01049471.1 306 420 + 124 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 307 420 124 + . gene_id 1 ; sequence AmOr78 ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 307 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 307 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 307 420 124 + . alignment_id 1 ; Query AmOr78 ; Align 307 182 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr88 Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 172 -> 220 Target range: 276 -> 420 173 : SerLeuSerProTyrTyrGluIleIleTyrThrIleGlnValLeuSerAlaTyrGluIleGlyI : 194 ...:!!! !||| ::: ||| !! |||!.!||||||!.!|||:!!:!!..!: GlnMetIleProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValAsnV 277 : caaATGATTCCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTAACG : 340 195 : leCysTyrHisCysPheAspAsnLeuLeuPheValIleAsnLeuTyrThrAlaGlyGlnPheAr : 215 !:||||||! !||||||||||||:::...|||:::::: !|||:!!..!|||||||||||||| alCysTyrLeuCysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheAr 341 : TGTGTTACCTTTGCTtcgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCG : 403 216 : gIleLeuArgTyrArg : 220 |||||||!:!|||||| gIleLeuGlnTyrArg 404 : TATACTACAATACAGA : 420 vulgar: AmOr88 172 220 . LHQN01049471.1 276 420 + 130 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 277 420 130 + . gene_id 1 ; sequence AmOr88 ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 277 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 277 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 277 420 130 + . alignment_id 1 ; Query AmOr88 ; Align 277 173 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr76 Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 181 -> 219 Target range: 306 -> 420 182 : PheValGlnValValPheValTyrHisValCysValCysTyrHisCysPheAspSerLeuLeuC : 203 ..!..!|||!.!:!!! !||||||!!.||| !|||||||||! !|||||||||::::::... LeuThrGlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePheP 307 : ctCACGCAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttt : 370 204 : ysIleLeuAsnLeuHisThrAlaSerGlnPheArgIleLeuGlnHisArg : 219 |||::: !||||||..!|||.!!||||||||||||||||||:!!||| heIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 371 : tcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: AmOr76 181 219 . LHQN01049471.1 306 420 + 110 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 307 420 110 + . gene_id 1 ; sequence AmOr76 ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 307 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 307 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 307 420 110 + . alignment_id 1 ; Query AmOr76 ; Align 307 182 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr68 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 166 Query range: 191 -> 316 Target range: 1345 -> 648 192 : AspValThrIleCysGlyLeuPheValHisMetTyrSerGlnGlnGluIleLeuLysHisAr : 212 ||| ! !.!! !!||||||!!.:!!|||!!:|||!!!||| |||||||||:!!||||| AspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisAr 1345 : GACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCG : 1285 213 : gLeuLysGluSerValAsnValGluAsnArgLeuAsnIleGlyLysIleValTyrPheHisA : 233 ||||||| |||:!!!!. !!!:!....!! !::! !:!! !!.!!:! !||| gLeuLys---SerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisT 1284 : TCTGAAG---AGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATT : 1225 234 : snTyrLeuTyr{Gl} >>>> Target Intron 1 >>>> {y}TyrAlaPheMetVal : 242 !! !:!!|||{ } 328 bp {!}!:!||| !!::!! yrArgIleTyr{Ly}++ ++{s}PheAlaGluIleIle 1224 : ATCGCATATAC{AA}gt.........................ag{A}TTCGCTGAAATTATA : 870 243 : GlnGluLysPheLysLysIleIleGlyIleGlnLeuLeuSerSerThrLeuValValCysPh : 263 .!.! !||||||!..! ! !!:!.!! |||!!!||| !!!!|||:!!..!:!!||||| AsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThrMetCysPh 869 : AACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACAATGTGCTT : 807 264 : eIleLeuTyrLysLeuAlaAsnThrSerLeuIleSerThrLysPheLeuGluPheValLeuT : 284 |! !|||!:!::!|||.!!.!.|||!.!:!! !||| :!! !!|||! !!!.:!!! !! eAsnLeuPheArgLeuThrGlnThrLysValTyrSer---GlnValLeuAlaLeuIleProP 806 : CAACCTCTTTCGACTGACACAGACCAAGGTGTATTCG---CAAGTTTTAGCATTGATACCGT : 747 285 : yrLeuAlaCysMetMetThrGlnIlePheValTyrCysTrpTyrGlyAsnGlnLeuLysLeu : 304 :!:!!!.! !!:!!.!..!!||||||||| !! !|||||||||||||||:!! !|||:!! heMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLysVal 746 : TCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTG : 687 305 : LysSerValGluValValAspThrIlePheGluLeu : 316 ||| ! !!!: !..!||| !:::|||...::: LysValArgAspGlnThrAspPheLeuPheSerIle 686 : AAGGTACGTGATCAAACAGACTTCttattctcaatt : 649 vulgar: AmOr68 191 316 . LHQN01050085.1 1345 648 - 166 M 23 69 G 1 0 M 21 63 S 0 2 5 0 2 I 0 324 3 0 2 S 1 1 M 38 114 G 1 0 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 649 1345 166 - . gene_id 1 ; sequence AmOr68 ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 1212 1345 . - . LHQN01050085.1 exonerate:protein2genome:local exon 1212 1345 . - . insertions 0 ; deletions 1 LHQN01050085.1 exonerate:protein2genome:local splice5 1210 1211 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 884 1211 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 884 885 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 649 883 . - . LHQN01050085.1 exonerate:protein2genome:local exon 649 883 . - . insertions 0 ; deletions 1 LHQN01050085.1 exonerate:protein2genome:local similarity 649 1345 166 - . alignment_id 1 ; Query AmOr68 ; Align 1346 192 69 ; Align 1277 216 63 ; Align 883 238 114 ; Align 769 277 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr72 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 149 Query range: 302 -> 360 Target range: 607 -> 433 303 : SerLeuGluIleProAspMetIlePheAsnSerAsnTrpProAsnLeuSerAsnGluAlaLysL : 324 |||||||||||| !|||! :!!|||.!.||||||||| !! ||||||.!.....!!|||| SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSerThrLysL 607 : AGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAGCACCAAAA : 544 325 : ysIleLeuLeuIleIleMetAlaArgSerLeuThrProValGluValValSerAlaHisIleIl : 345 ||! !||||||! |||||| !|||||||||! !|||:!!||| !!..!.!!||| !:!!.! ysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheThrGlyAlaPheValPh 543 : AGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTT : 481 346 : eProLeuAsnLeuGluSerPheLysArgLeuIleLysAlaThrTyr : 360 !|||:!!||||||||||||||||||!!!:!! ! ||| eProValAsnLeuGluSerPheLysSerValCysIleLysIleTyr 480 : TCCCGTAAATTTGGAGTCTTTTAAAAGTGTTTGTatcaaaatatat : 434 vulgar: AmOr72 302 360 . LHQN01050085.1 607 433 - 149 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 434 607 149 - . gene_id 1 ; sequence AmOr72 ; gene_orientation . LHQN01050085.1 exonerate:protein2genome:local cds 434 607 . - . LHQN01050085.1 exonerate:protein2genome:local exon 434 607 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 434 607 149 - . alignment_id 1 ; Query AmOr72 ; Align 608 303 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr72 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 190 -> 236 Target range: 1345 -> 1207 191 : AspThrLeuPheAlaGlyLeuLeuLeuGlnValCysCysGlnLeuAspThrLeuValTyrAr : 211 |||!.!||||||::!|||||||||:!!!!.:!!! !||||||!!!!!:! !||| !:!!|| AspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisAr 1345 : GACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCG : 1285 212 : gLeuGlnAsnIleLysGluAspAlaIleGlnSerLeuLysTyrCysAlaArgGlnHisGluL : 232 ||||:!!!:!|||||| ||| ! ! ||| !||| ! |||||| !!!.||| ! ! gLeuLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrA 1284 : TCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATC : 1222 233 : euIleTyrArgPhe : 236 !||||||!:!||| rgIleTyrLysPhe 1221 : GCATATACAAGTTT : 1208 vulgar: AmOr72 190 236 . LHQN01050085.1 1345 1207 - 113 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 1208 1345 113 - . gene_id 2 ; sequence AmOr72 ; gene_orientation . LHQN01050085.1 exonerate:protein2genome:local cds 1208 1345 . - . LHQN01050085.1 exonerate:protein2genome:local exon 1208 1345 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 1208 1345 113 - . alignment_id 2 ; Query AmOr72 ; Align 1346 191 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr71 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 168 Query range: 189 -> 235 Target range: 1345 -> 1207 190 : AspThrLeuTyrSerGlyLeuLeuIleHisIleSerCysGlnPheGluIleLeuGluHisAr : 210 |||!.!|||!:!|||||||||||||||||||||! !||||||||||||||||||:!!||||| AspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisAr 1345 : GACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCG : 1285 211 : gLeuLysAsnIleGlySerAspLysAsnTyrThrMetLysGlnCysValArgHisHisAsnH : 231 |||||||!:!||| ! !!|||!:!.!.|||:!! !|||||||||!.! !|||||| !!! gLeuLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrA 1284 : TCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATC : 1222 232 : isIleTyrLysTyr : 235 .!|||||||||!:! rgIleTyrLysPhe 1221 : GCATATACAAGTTT : 1208 vulgar: AmOr71 189 235 . LHQN01050085.1 1345 1207 - 168 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 1208 1345 168 - . gene_id 1 ; sequence AmOr71 ; gene_orientation . LHQN01050085.1 exonerate:protein2genome:local cds 1208 1345 . - . LHQN01050085.1 exonerate:protein2genome:local exon 1208 1345 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 1208 1345 168 - . alignment_id 1 ; Query AmOr71 ; Align 1346 190 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr71 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 151 Query range: 301 -> 362 Target range: 607 -> 424 302 : SerLeuGluLeuSerAspMetIlePheArgSerAsnTrpThrSerLeuAsnAsnAsnValGlnA : 323 |||||||||:!!!!!|||! :!!|||..!||||||||||||:!!|||!:!.!.!:!..!:!!! SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSerThrLysL 607 : AGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAGCACCAAAA : 544 324 : rgAlaIleLeuLeuValMetArgArgSerMetLysProIleGluPheThrSerIleTyrIleVa : 344 :!.!!:!!||| !:!!||| !||||||:!!||||||||||||||||||.!! !!:!:!! ! ysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheThrGlyAlaPheValPh 543 : AGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTT : 481 345 : lSerValAsnLeuAspSerPheMetThrLeuLeuLysSerSerTyrSerAlaPhe : 362 ! !!|||||||||!!:||||||! !:!:!!! ! ... ||| ||| eProValAsnLeuGluSerPheLysSerValCysIleLysIleTyrIlePhePhe 480 : TCCCGTAAATTTGGAGTCTTTTAAAAGTGTTTGTatcaaaatatatatatttttc : 425 vulgar: AmOr71 301 362 . LHQN01050085.1 607 424 - 151 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 425 607 151 - . gene_id 2 ; sequence AmOr71 ; gene_orientation . LHQN01050085.1 exonerate:protein2genome:local cds 425 607 . - . LHQN01050085.1 exonerate:protein2genome:local exon 425 607 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 425 607 151 - . alignment_id 2 ; Query AmOr71 ; Align 608 302 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr116 Target: KQ414583.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold34, whole genome shotgun sequence Model: protein2genome:local Raw score: 655 Query range: 0 -> 234 Target range: 618946 -> 619960 1 : MetThrAsnHisLeuGluLysGlnIleLysLeuLysLysIleAsnSerAsnLysHisL : 20 ||| !.!. ! ! |||||| |||||||||||||||!!. !!|||||||||| MetAspGluPheAlaGlyLysGlnThrLysLeuLysLysIleLysProAsnLysHisL 618947 : ATGGACGAGTTTGCGggaaaacaaacgaaattgaaaaagatcAAACCTAacaaacatt : 619004 21 : euGlnAsnAsnLeuSerIleIleTyrTyrIleGlyLeuTrpProAspArgValLysTy : 39 ||:::||| ::: :::...|||||| |||:!!||||||! !:!:!!||||| euLysAsnCysMetLeuLeuPheTyrTyrAlaGlyIleTrpProGlyGlnMetLysTy 619005 : tgaaaaattgtatgttattattttactatGCGGGAATATGGCCTGGACAGATGAAATA : 619061 40 : rLysTyrLeuTyrAsnLeuTyrThrIleCysSerLeuIlePheLeuValGlyIleIle : 58 |||| !|||||| !!|||||| !||| !!|||!!!:!:.!!|||:!!!.!.!!! ! rLysArgLeuTyrTyrLeuTyrGlyIleSerSerPheValIleLeuLeuAlaPheThr 619062 : TAAGCGTCTCTATTATCTGTATGGAATTAGCAGTTTTGTGATTTTATTGGCATTTACT : 619118 59 : IleValSerGluIleIleTyrIleIleIleAsnTrpGlyLysIleGluIleMetMetT : 78 :!!|||!!!|||.!! |||:!! !:!!:!!|||||| ! !! !!!:|||: LeuValThrGluPheAlaTyrLeuCysValHisTrpGlyAspTyrAlaGluIleMetS 619119 : CTTGTTACCGAATTCGCGTATCTTTGTGTACATTGGGGAGACTATGCCGAAATAATGT : 619178 79 : hrGlyLeuThrIleLeuMetThrAsnSerThrTyrAlaAlaLys >>>> Target : 93 !!||| !||||||!!!|||||||||! !:!!|||..! !||| 31 erGlyAlaThrIlePheMetThrAsnTyrSerTyrCysLeuLys++ 619179 : CCGGTGCAACTATTTTTATGACAAATTATTCATATTGTCTGAAGgt............ : 619225 94 : Intron 1 >>>> ValIleTyrIleIleCysArgTyrGluArgIleLysAsnLeuV : 107 2 bp |||||| !|||:!! ||| !:!!|||||||||:!!|||: ++ValIleValIleValLeuArgArgLysArgIleLysAspLeuI 619226 : .............agGTAATTGTTATCGTTCTACGACGTAAACGTATCAAAGATCTTA : 619577 108 : alAspIleThrAsnSerGluIlePheAsnArgAspAsnAspLysTyrLysHisIleIl : 126 !!:!!||||||.!..!!:!!:!:|||! !|||:!!||||||||||||:!!!.!|||:! leAsnIleThrGluGlyLysLeuPheIleArgAsnAsnAspLysTyrGluArgIleVa 619578 : TAAATATAACCGAGGGAAAACTGTTTATCCGCAATAACGATAAATACGAACGTATCGT : 619634 127 : eSerTyrTyrAsnTrpGlnGlyIlePheHisHisIleAlaTyrGlnGlyPheAlaSer : 145 !!!!||||||!.!||||||||||||||||||||||||.!!||||||.!!|||!.!! ! lThrTyrTyrThrTrpGlnGlyIlePheHisHisIleThrTyrGlnSerPheGlyIle 619635 : AACGTATTACACTTGGCAAGGAATTTTCCATCATATCACTTATCAAAGCTTCGGTATC : 619691 146 : IleCysIlePheSerTyrSerCysIleProLeuGlnSerAlaPheSerGlyLysSerL : 165 |||..!:!!.!!! !!::||||||! ! !!:!! !!:! !.!.!.! !!! !! !: IleAlaValIlePheTrpSerCysThrAlaValValAsnLeuMetLysArgThrTyrG 619692 : ATAGCTGTAATCTTCTGGTCATGCACAGCAGTTGTAAATCTGATGAAACGGACGTATC : 619751 166 : ysGlnLeuProIleAlaGlyTrpTyrProTyrAsnValThrSerThrProIlePheGl : 184 !!! ||| !||| !!.!|||||||||||||||||||||! !:!!||| !!::|| lnLeuLeuLeuIleLysAlaTrpTyrProTyrAsnValThrIleSerProAlaTyrGl 619752 : AACTTTTATTGATAAAAGCATGGTATCCTTATAATGTAACAATTTCGCCAGCTTAtga : 619808 185 : uIleAlaCysLeuHisGlnValLeuValIleLeuIleAsnCysIleAsnAsnIleAla : 203 |...... ||||||||||||:!!! !:!! !:::|||||||||||||||:!!||| uPheThrIleLeuHisGlnValValGlyValThrValAsnCysIleAsnAsnValAla 619809 : atttactattttacatCAAGTCGTGGGTGTCACTGtaaattgtattaataatGTAGCA : 619865 204 : IleAspThrLeuIleThrGlyPheIleIleIleThrCysCysGlnLeuThrIleLeuS : 223 |||||||||!!!||||||||||||||||||! !.!!|||||||||||||||:!!|||| IleAspThrPheIleThrGlyPheIleIleThrAlaCysCysGlnLeuThrLeuLeuS 619866 : ATAGATACTTTTATAACAGGTTTTATAATAACTGCTTGTTGCCAATTGACACTCTTAA : 619925 224 : erTyrAsnIleSerSerIleHisTyrThrValGlu : 234 |||||||||||||||||||||||||| !!.!||| erTyrAsnIleSerSerIleHisTyrGluAlaGlu 619926 : GTTATAACATCTCTTCGATACACTATGAAGCGGAG : 619960 vulgar: AmOr116 0 234 . KQ414583.1 618946 619960 + 655 M 92 276 5 0 2 I 0 308 3 0 2 M 142 426 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414583.1 exonerate:protein2genome:local gene 618947 619960 655 + . gene_id 1 ; sequence AmOr116 ; gene_orientation + KQ414583.1 exonerate:protein2genome:local cds 618947 619222 . + . KQ414583.1 exonerate:protein2genome:local exon 618947 619222 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local splice5 619223 619224 . + . intron_id 1 ; splice_site "GT" KQ414583.1 exonerate:protein2genome:local intron 619223 619534 . + . intron_id 1 KQ414583.1 exonerate:protein2genome:local splice3 619533 619534 . + . intron_id 0 ; splice_site "AG" KQ414583.1 exonerate:protein2genome:local cds 619535 619960 . + . KQ414583.1 exonerate:protein2genome:local exon 619535 619960 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local similarity 618947 619960 655 + . alignment_id 1 ; Query AmOr116 ; Align 618947 1 276 ; Align 619535 93 426 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr116 Target: KQ414583.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold34, whole genome shotgun sequence Model: protein2genome:local Raw score: 480 Query range: 268 -> 418 Target range: 620143 -> 620811 269 : LeuLysHisCysValLysHisSerIleIleIlePheAspPheThrLysGlnIleGlnA : 288 :::||| ||| ... |||!:!..!|||.!!::!:!!||||||| ValLysPheMetTyrLysLeuLeuPheAspIleTyrSerPheAlaArgLysIleGlnA 620144 : gtcaaatttatgtataaattattattcgatATTTACAGTTTCGCACGAAAGATTCAAG : 620201 289 : spIlePheGlyIleIleIlePhePheGlnLeuPheValAsnCysIleIleValCysLe : 307 ||! !||||||! !:!:|||||||||||||||.!.||||||||||||! !|||||||| spThrPheGlyThrValIlePhePheGlnLeuLeuValAsnCysIleThrValCysLe 620202 : ATACATTCGGTACTGTGATATTTTTTCAACTGCTGGTAAATTGTATAACCGTTTGTTT : 620258 308 : uAlaAlaPheAsnLeuSerGln >>>> Target Intron 1 >>>> IleLysA : 317 | !|||!:!|||:!!|||||| 81 bp :!:||| uLeuAlaTyrAsnIleSerGln++ ++LeuLysT 620259 : ACTTGCATACAATATATCACAGgt.........................agCTGAAAT : 620369 318 : snTyrIleThrProGluPhePheGlySerLeuLeuTyrIleCysCysMetIleTyrGl : 336 !!|||:!! ! !!!!:!!.||||||! !!!!:!!:!!!!:|||||||||! !||||| yrTyrValLeuSerAspLeuPheGlyMetPheMetHisMetCysCysMetThrTyrGl 620370 : ATTACGTTCTATCCGATTTGTTTGGTATGTTTATGCATATGTGCTGTATGACATATCA : 620426 337 : nIlePheIleTyrCysTrpHisGlyAsnGluLeuTyrLeuHis >>>> Target I : 351 ||||||||||||||||||||||||||||||||||||||||||| 68 nIlePheIleTyrCysTrpHisGlyAsnGluLeuTyrLeuHis++ 620427 : AATCTTTATATATTGCTGGCACGGGAACGAACTGTATCTTCATgt............. : 620473 352 : ntron 2 >>>> SerMetLysIleCysLeuSerAlaTyrLysAsnAsnTrpTrpAs : 365 bp ||||||!!.||||||!!!:!!||||||! !||||||||||||:! ++SerMetAsnIleCysPheAlaAlaTyrMetAsnAsnTrpTrpHi 620474 : ............agAGCATGAATATATGTTTTGCCGCTTATATGAATAATTGGTGGCA : 620581 366 : nAsnAsnLysAsnPheAsnTyrAlaLeuLeuIleIleMetIleArgThrGlnIlePro : 384 !|||!.!|||:!!|||!!. |||||||||:!!:!!||| !!:!.!!||| !||| sAsnThrLysAspPheLysArgAlaLeuLeuValValMetSerLysAlaGlnArgPro 620582 : TAATACCAAGGATTTTAAACGAGCCTTGCTCGTTGTAATGTCAAAAGCTCAACGACCT : 620638 385 : LeuIleIleIleValGlyLysValMetGluLeuSerLeuGlnAsnPheLeuLeu >> : 403 :!!|||:!!! !||||||!!.:!!|||||||||||||||:!!||||||:!!||| IleIleLeuThrValGlyAsnIleMetGluLeuSerLeuGluAsnPheValLeu++ 620639 : ATTATTTTAACTGTTGGAAATATTATGGAATTATCTTTAGAGAATTTCGTTCTAgt.. : 620697 404 : >> Target Intron 3 >>>> IleLeuArgThrSerTyrSerIlePheThrLeu : 413 69 bp ||||||||||||||||||||||||||||||:!! ++IleLeuArgThrSerTyrSerIlePheThrVal 620698 : .......................agATTCTACGTACATCGTATTCCATTTTTACCGTT : 620794 414 : LeuLysThrPheThr : 418 |||||||||! !||| LeuLysThrSerThr 620795 : TTAAAAACTTCTACA : 620811 vulgar: AmOr116 268 418 . KQ414583.1 620143 620811 + 480 M 46 138 5 0 2 I 0 77 3 0 2 M 36 108 5 0 2 I 0 64 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414583.1 exonerate:protein2genome:local gene 620144 620811 480 + . gene_id 2 ; sequence AmOr116 ; gene_orientation + KQ414583.1 exonerate:protein2genome:local cds 620144 620281 . + . KQ414583.1 exonerate:protein2genome:local exon 620144 620281 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local splice5 620282 620283 . + . intron_id 1 ; splice_site "GT" KQ414583.1 exonerate:protein2genome:local intron 620282 620362 . + . intron_id 1 KQ414583.1 exonerate:protein2genome:local splice3 620361 620362 . + . intron_id 0 ; splice_site "AG" KQ414583.1 exonerate:protein2genome:local cds 620363 620470 . + . KQ414583.1 exonerate:protein2genome:local exon 620363 620470 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local splice5 620471 620472 . + . intron_id 2 ; splice_site "GT" KQ414583.1 exonerate:protein2genome:local intron 620471 620538 . + . intron_id 2 KQ414583.1 exonerate:protein2genome:local splice3 620537 620538 . + . intron_id 1 ; splice_site "AG" KQ414583.1 exonerate:protein2genome:local cds 620539 620694 . + . KQ414583.1 exonerate:protein2genome:local exon 620539 620694 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local splice5 620695 620696 . + . intron_id 3 ; splice_site "GT" KQ414583.1 exonerate:protein2genome:local intron 620695 620763 . + . intron_id 3 KQ414583.1 exonerate:protein2genome:local splice3 620762 620763 . + . intron_id 2 ; splice_site "AG" KQ414583.1 exonerate:protein2genome:local cds 620764 620811 . + . KQ414583.1 exonerate:protein2genome:local exon 620764 620811 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local similarity 620144 620811 480 + . alignment_id 2 ; Query AmOr116 ; Align 620144 269 138 ; Align 620363 315 108 ; Align 620539 351 156 ; Align 620764 403 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr114 Target: KQ414583.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold34, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 159 -> 244 Target range: 619735 -> 619990 160 : MetLysTyrAsnGluAsnLysLeuLeuPheArgAlaTyrPheProTyrAspThrThrV : 179 |||||| !.. ! .!. ||||||.!.!:!|||!::!:!||||||:!!..!|||: MetLysArgThrTyrGlnLeuLeuLeuIleLysAlaTrpTyrProTyrAsnValThrI 619736 : ATGAAACGGACGTATCAACTTTTATTGATAAAAGCATGGTATCCTTATAATGTAACAA : 619793 180 : alSerProAsnTyrGluLeuThrIleLeuGlyGlnPheValAlaAlaLeuTyrAlaAl : 198 !!|||||| !||||||...||||||||| ||| !!|||!.!!.! ! .. leSerProAlaTyrGluPheThrIleLeuHisGlnValValGlyValThrValAsnCy 619794 : TTTCGCCAGCTTAtgaatttactattttacatCAAGTCGTGGGTGTCACTGtaaattg : 619850 199 : aThrSerTyrThrAlaValAspThrPheValAlaMetLeuIleLeuHisValCysGly : 217 . ::: ..!|||:!!|||||||||:!!.!! !!!|||:!! !!.!||| !! sIleAsnAsnValAlaIleAspThrPheIleThrGlyPheIleIleThrAlaCysCys 619851 : tattaataatGTAGCAATAGATACTTTTATAACAGGTTTTATAATAACTGCTTGTTGC : 619907 218 : GlnLeuSerGlyIleLysAsnGluLeuSerArgLeuProThrTyrAspLysLysAspL : 237 ||||||!!! !:!!!.. !!.!.:!!||| !:!!! ! ! ! ! :!!|||!!:! GlnLeuThrLeuLeuSerTyrAsnIleSerSerIleHisTyrGluAlaGluLysGluP 619908 : CAATTGACACTCTTAAGTTATAACATCTCTTCGATACACTATGAAGCGGAGAAAGAAT : 619967 238 : euLysArgArgLeuLysGluIle : 244 !! !||| ! ! !!:||| heValAlaArgThrAspAspIle 619968 : TTGTTGCTAGGACTGATGATATC : 619990 vulgar: AmOr114 159 244 . KQ414583.1 619735 619990 + 133 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414583.1 exonerate:protein2genome:local gene 619736 619990 133 + . gene_id 1 ; sequence AmOr114 ; gene_orientation . KQ414583.1 exonerate:protein2genome:local cds 619736 619990 . + . KQ414583.1 exonerate:protein2genome:local exon 619736 619990 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local similarity 619736 619990 133 + . alignment_id 1 ; Query AmOr114 ; Align 619736 160 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: KQ414588.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold11, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 332 -> 381 Target range: 776544 -> 776691 333 : TyrGluAlaHisTrpTyrAsnGlySerSerArgThrGlnSerLeuTyrValLeuValL : 352 |||...||| |||||||||.!!..!!.!|||||||||||||||!:!||||||!.!| TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaL 776545 : TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGT : 776602 353 : euArgLysCysLeuAsnProProThrLeuThrGlyGlyGlyLeuIleValLeuAsnLe : 371 |||||!!.||||||::! !!||| !:!!|||!.!||||||||||||..!:!!||||| euArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLe 776603 : TAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTT : 776659 372 : uAspSerPheValGlnIleLeuLysLeuSer : 381 |.!.|||||| !:!!:!! !:::! !||| uGlnSerPheSerGluValThrArgSerSer 776660 : GCAAAGTTTCTCAGAGGTAACACGTTCATCG : 776691 vulgar: AmOr108 332 381 . KQ414588.1 776544 776691 + 149 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414588.1 exonerate:protein2genome:local gene 776545 776691 149 + . gene_id 1 ; sequence AmOr108 ; gene_orientation . KQ414588.1 exonerate:protein2genome:local cds 776545 776691 . + . KQ414588.1 exonerate:protein2genome:local exon 776545 776691 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local similarity 776545 776691 149 + . alignment_id 1 ; Query AmOr108 ; Align 776545 333 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: KQ414588.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold11, whole genome shotgun sequence Model: protein2genome:local Raw score: 222 Query range: 283 -> 379 Target range: 776342 -> 776691 284 : LeuLysValValThrMetAspTyrCysLeuAspPheTyrLysTyrSerSerPheLeuI : 303 |||||| !:!!! !:!! ! ! !!! ! ! ||| !! !!!!!!|||:!!! LeuLysCysIleIleLeuCysLysValPheIleValTyrLeuLeuCysThrPheIleM 776343 : ttaaagtgTATAATATTGTGTAAAGTGTTTATTGTGTACTTATTGTGCACATTTATCA : 776400 304 : leValGlnLeuMetHisLeuCysTyrValMetIleGlnGlyGlnPheValIleAspSe : 322 !::!!||||||:!:|||:!! !|||:!!! :!!! !||||||||||||||||||:! etIleGlnLeuValHisValLeuTyrLeuThrLeuProGlyGlnPheValIleAspAl 776401 : TGATTCAATTGGTACACGTACTTTATCTAACTCTTCCAGGACAATTCGTGATCGACGC : 776457 323 : rCysAsnGluIleTyrTyrSer{Il} >>>> Target Intron 1 >>>> {e} : 330 ! !.!.||||||! ! ! |||{||} 61 bp {|} aAsnGluGluIleSerGluSer{Il}++ ++{e} 776458 : GAACGAGGAAATCTCCGAATCG{AT}gt.........................ag{A} : 776544 331 : TyrGluAlaSerTrpTyrAsnIleAsnProLysIleGlnAlaLeuTyrIleLeuAlaL : 350 |||...|||! !|||||||||! !:!! !!:!! |||:!!|||!:!:!!||||||| TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaL 776545 : TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGT : 776602 351 : euArgArgSerLeuThrProProArgLeuThrAlaGlyGlyLeuIleGluLeuAsnMe : 369 |||||!.!!!!|||:!! !!|||!:!:!!|||||||||||||||||| !:!!|||:! euArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLe 776603 : TAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTT : 776659 370 : tGlnSerPheSerGluValIleLysLeuSer : 379 !||||||||||||||||||! !:::! !||| uGlnSerPheSerGluValThrArgSerSer 776660 : GCAAAGTTTCTCAGAGGTAACACGTTCATCG : 776691 vulgar: AmOr113 283 379 . KQ414588.1 776342 776691 + 222 M 46 138 S 0 2 5 0 2 I 0 57 3 0 2 S 1 1 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414588.1 exonerate:protein2genome:local gene 776343 776691 222 + . gene_id 1 ; sequence AmOr113 ; gene_orientation + KQ414588.1 exonerate:protein2genome:local cds 776343 776482 . + . KQ414588.1 exonerate:protein2genome:local exon 776343 776482 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local splice5 776483 776484 . + . intron_id 1 ; splice_site "GT" KQ414588.1 exonerate:protein2genome:local intron 776483 776543 . + . intron_id 1 KQ414588.1 exonerate:protein2genome:local splice3 776542 776543 . + . intron_id 0 ; splice_site "AG" KQ414588.1 exonerate:protein2genome:local cds 776544 776691 . + . KQ414588.1 exonerate:protein2genome:local exon 776544 776691 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local similarity 776343 776691 222 + . alignment_id 1 ; Query AmOr113 ; Align 776343 284 138 ; Align 776545 331 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: KQ414588.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold11, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 332 -> 381 Target range: 776544 -> 776691 333 : TyrGluAlaAspTrpTyrAsnGlySerSerLysMetGlnSerLeuTyrValLeuValL : 352 |||...||| |||||||||.!!..!!.!!:!! !|||||||||!:!||||||!.!| TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaL 776545 : TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGT : 776602 353 : euArgLysCysLeuSerProProLysLeuThrGlyGlyGlyPheValAlaLeuAsnLe : 371 |||||!!.||||||||| !!|||:!!:!!|||!.!||||||.!.:!!.!!:!!||||| euArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLe 776603 : TAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTT : 776659 372 : uAspSerPheValGlnIleLeuLysAlaSer : 381 |.!.|||||| !:!!:!! !::::!!||| uGlnSerPheSerGluValThrArgSerSer 776660 : GCAAAGTTTCTCAGAGGTAACACGTTCATCG : 776691 vulgar: AmOr109 332 381 . KQ414588.1 776544 776691 + 142 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414588.1 exonerate:protein2genome:local gene 776545 776691 142 + . gene_id 1 ; sequence AmOr109 ; gene_orientation . KQ414588.1 exonerate:protein2genome:local cds 776545 776691 . + . KQ414588.1 exonerate:protein2genome:local exon 776545 776691 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local similarity 776545 776691 142 + . alignment_id 1 ; Query AmOr109 ; Align 776545 333 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr120 Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 168 Query range: 266 -> 385 Target range: 1306913 -> 1306556 267 : AspAsnMetGluLysAsnPheHisLeuIleLeuPheLeuGlnAlaIleThrSerSe : 285 :!!::::::...... ||| !|||:!!|||:!!||| !:!!||||||.! AsnAspValAsnAsnLeuPheThrProIleValPheValGlnLeuLeuThrSerGl 1306913 : AATGatgtgaataatttatttactccCATCGTTTTCGTACAACTTCTTACAAGCGG : 1306859 286 : rLeuIleIleCysPheValGlyPheGlnIleSerIleAlaLeuThrGluArgSerL : 304 !:!!:!!||||||!!. !|||||| !:!! .!!! ! ! !! |||!!! yIleValIleCysLeuSerGlyPheAlaVal---PheAspAsnAspAlaArgThrA 1306858 : AATAGTAATTTGTTTAAGTGGATTCGCGGTT---TTCGATAACGACGCCCGTACCG : 1306805 305 : ysPheLeuGluSerPheSerHisLeuIleValSerLeuPheGlnLeuLeuLeuPhe : 322 ! .!!|||:!!! ! ! |||:!!||| ! !! !! !!!.||||||||||||!:: spIleLeuLysTyrValSerTyrLeuSerSerIleTrpLeuGlnLeuLeuLeuTrp 1306804 : ATATTCTGAAATACGTATCTTATTTGTCCTCGATTTGGTTGCAACTTTTGTTATGG : 1306751 323 : CysPheProGlyAspIleLeuIleArgGlnSerPheAsnIleSerIleAlaAlaTy : 341 |||!!.||||||!!:||||||:!!!:!:!!|||!!..!.|||.!! !!.!!.!|| CysLeuProGlyGluIleLeuValGlnGluSerLeuGluIleGlyHisValValTy 1306750 : TGTTTGCCCGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGACACGTAGTCTA : 1306694 342 : r<->SerMetGlnTrpTyrGlnLeuProThrPheIleLysAspGluIleCysMetI : 359 | !:!:!:! !||||||.!.|||||| !!.!! !:!! :!!:!!||||||! rLeuAsnValProTrpTyrAsnLeuProProIleTyrGlnArgLysLeuCysMetM 1306693 : CTTAAATGTACCATGGTACAATTTGCCGCCAATTTACCAGAGAAAACTTTGCATGA : 1306637 360 : leIleLeuArgSerGlnArgProSerPheIleThrAlaGlyLysLeuTyrIleMet : 377 !:|||||||||:!!|||!:! !!!! !||||||||| !! !!!! ! :!! etIleLeuArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPheArgThrLeu 1306636 : TGATCCTTAGGGCACAACAATATTGCAGCATCACGGCATTAACGTTTCGAACGTTG : 1306583 378 : HisLeuGluAsnPheThrAlaIle : 385 !:!!.!.!..!!.|||::!:!: SerIleHisThrLeuThrSerVal 1306582 : TCTATTCACACGTTAACGAGCGTG : 1306557 vulgar: AmOr120 266 385 . KQ414608.1 1306913 1306556 - 168 M 29 87 G 1 0 M 45 135 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1306557 1306913 168 - . gene_id 1 ; sequence AmOr120 ; gene_orientation . KQ414608.1 exonerate:protein2genome:local cds 1306557 1306913 . - . KQ414608.1 exonerate:protein2genome:local exon 1306557 1306913 . - . insertions 3 ; deletions 1 KQ414608.1 exonerate:protein2genome:local similarity 1306557 1306913 168 - . alignment_id 1 ; Query AmOr120 ; Align 1306914 267 87 ; Align 1306827 297 135 ; Align 1306689 342 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr104 Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 298 -> 405 Target range: 1306832 -> 1305879 299 : ThrValValAsnLeuAspArgProGluGluAlaIleArgThrAlaValPheLeuGl : 317 .!!||| !!:!! !||| !! ! !!: !:!:!:! !!.! !!:!|||.. AlaValPheAspAsnAspAlaArgThrAspIleLeuLysTyrValSerTyrLeuSe 1306832 : GCGGTTTTCGATAACGACGCCCGTACCGATATTCTGAAATACGTATCTTATTTGTC : 1306778 318 : yAlaGluGlnPheHisLeuPheValIleSerLeuProGlyGlnValLeuLeuAspH : 336 !:!! !!!.!!.|||!!.:!! !!!|||||||||:!!:!!|||:!!.!.. rSerIleTrpLeuGlnLeuLeuLeuTrpCysLeuProGlyGluIleLeuValGlnG 1306777 : CTCGATTTGGTTGCAACTTTTGTTATGGTGTTTGCCCGGTGAAATTCTCGTTCAAG : 1306721 337 : isCysThrGluLeuAlaAsnAsnIleTyrSerSerThr<->TrpTyrArgIlePro : 353 !. !! !|||:!!!.!:!! :!!|||! !!:!..! ||||||!.!:!:||| luSerLeuGluIleGlyHisValValTyrLeuAsnValProTrpTyrAsnLeuPro 1306720 : AGAGTTTAGAAATAGGACACGTAGTCTACTTAAATGTACCATGGTACAATTTGCCG : 1306667 354 : ValLysIleGlnLysValLeuHisMetMetGlnIleArgSerLysLysProCysSe : 372 !! !|||!:! !||| !|||||| :!!|||:!!:!!:!! !||||| ProIleTyrGlnArgLysLeuCysMetMetIleLeuArgAlaGlnGlnTyrCysSe 1306666 : CCAATTTACCAGAGAAAACTTTGCATGATGATCCTTAGGGCACAACAATATTGCAG : 1306610 373 : rLeuThrAlaGlyGlyLeuTyrGluMetAsnMetGluAsnPheGlyIle >>>> : 389 |:!!|||||| ! !!!! !:!!::!!!:.!.!..!!. !! ! rIleThrAlaLeuThrPheArgThrLeuSerIleHisThrLeuThrSer++ 1306609 : CATCACGGCATTAACGTTTCGAACGTTGTCTATTCACACGTTAACGAGCgt..... : 1306557 390 : Target Intron 1 >>>> ThrPheLysThrCysMetSerTyrPheThrMetL : 400 629 bp ..!|||!!.|||..! ||||||||||||:!!| ++ValPheAsnThrAlaAlaSerTyrPheThrLeuL 1306556 : ....................agGTATTCAATACAGCCGCTTCATATTTCACTTTGC : 1305897 401 : euMetSerLeuLysLys : 405 || ..!:!!:!!:!! euArgGlnMetGlnGln 1305896 : TGCGACAAATGCAACAA : 1305880 vulgar: AmOr104 298 405 . KQ414608.1 1306832 1305879 - 111 M 50 150 G 0 3 M 40 120 5 0 2 I 0 625 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1305880 1306832 111 - . gene_id 1 ; sequence AmOr104 ; gene_orientation + KQ414608.1 exonerate:protein2genome:local cds 1306560 1306832 . - . KQ414608.1 exonerate:protein2genome:local exon 1306560 1306832 . - . insertions 3 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1306558 1306559 . - . intron_id 1 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1305931 1306559 . - . intron_id 1 KQ414608.1 exonerate:protein2genome:local splice3 1305931 1305932 . - . intron_id 0 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1305880 1305930 . - . KQ414608.1 exonerate:protein2genome:local exon 1305880 1305930 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1305880 1306832 111 - . alignment_id 1 ; Query AmOr104 ; Align 1306833 299 150 ; Align 1306680 349 120 ; Align 1305931 389 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr120 Target: KQ414615.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold33, whole genome shotgun sequence Model: protein2genome:local Raw score: 1484 Query range: 0 -> 403 Target range: 2575347 -> 2577180 1 : MetSerAsnGlnThrAsnThrMetAsnIleArgAsnTyrIlePheIleAsnGlnLe : 19 :!:|||||||||:!!|||! !|||||||||:::||||||::!|||||||||||||| ValSerAsnGlnSerAsnIleMetAsnIleLysAsnTyrValPheIleAsnGlnLe 2575348 : GTATCCAATCAATCAAATATAAtgaacattaaaaattacgtCTTTATAAATCAACT : 2575402 20 : uValLeuLysPheValGlyPheTyrProIleAsnIleLeuArgTyrValIleCysI : 38 |!.!|||||||||||||||.!!|||||||||!:!|||:!!||||||:!!||||||| uAlaLeuLysPheValGlyLeuTyrProIleSerIleIleArgTyrLeuIleCysI 2575403 : GGCCCTAAAGTTTGTTGGACTTTATCCAATAAGTATTATCAGATATCTTATATGCA : 2575459 39 : leSerCysIleMetPheIleValIleProGlnIleIleMetIleTyrIleAsnTrp : 56 ||||||||||||||.!!|||:!!||||||||||||! !|||||||||! !|||||| leSerCysIleMetLeuIleIleIleProGlnIleThrMetIleTyrThrAsnTrp 2575460 : TTAGTTGTATTATGCTTATAATCATACCACAAATAACAATGATTTATACAAATTGG : 2575513 57 : AsnAspLeuAsnIleValMetGluThr{Gl} >>>> Target Intron 1 >> : 66 :!!|||||||||||||||:!!||||||{.!} 78 bp AspAspLeuAsnIleValLeuGluThr{Se}++ 2575514 : GATGATCTAAATATCGTCTTGGAAACA{AG}gt....................... : 2575547 67 : >> {y}SerThrLeuLeuThrIleLeuLeuAlaAlaLeuLysSerIleValTrpI : 83 {!}|||!:!||||||||||||! !||||||.!!||||||||||||:!!|||! ++{r}SerSerLeuLeuThrIleSerLeuAlaThrLeuLysSerIleIleTrpM 2575548 : ..ag{c}tCAAGTCTACTTACAATTTCCCTTGCTACATTAAAATCAATAATTTGGA : 2575672 84 : lePheAsnArgLysLysLeuGluPhePheIleGluPheMetLeuThrAspTyrTrp : 101 !:|||||||||||||||||| ! !!|||||||||||||||||||||||||||||| etPheAsnArgLysLysLeuAlaValPheIleGluPheMetLeuThrAspTyrTrp 2575673 : TgtttaacagaaaaaaattggcGGTTTTCATTGAGTTCATGTTAACAGACTATTGG : 2575726 102 : LysIleIleGluThrAsnValPheGluTyrLeuGlnGluTyrAla{Il} >>>> : 117 :!!|||:!!:!!|||||||||! !|||||||||||||||||||||{||} GluIleValLysThrAsnValSerGluTyrLeuGlnGluTyrAla{Il}++ 2575727 : GAAATAGTTAAAACTAACGTTTCTGAATACCTACAAGAATATGCA{AT}gt..... : 2575778 118 : Target Intron 2 >>>> {e}TyrAlaLysAsnIleThrLysGlyTyrPheP : 128 84 bp {|}||||||||||||||||||||||||||||||. ++{e}TyrAlaLysAsnIleThrLysGlyTyrPheI 2575779 : ....................ag{a}tatgctaaaaatattacaaagggttatttta : 2575891 129 : heSerMetCysAsnAlaLeuLeuPhePhePheSerLeuProIleIleGluThr<-> : 146 ..|||||||||||||||||||||||||||! !||||||||||||||||||! ! leSerMetCysAsnAlaLeuLeuPhePheCysSerLeuProIleIleGluIlePhe 2575892 : tttcaatgtgtAATGCATTACTATTCTTCTGTAGCTTGCCTATTATCGAAATATTT : 2575945 147 : LeuThrLysAsnGluAsnLeuAsnAsnPheThrIleLysAsnPheProPheAlaAl : 164 :!!|||:!!:!!:!!|||! !:!!|||.!!|||:!:|||||||||||||||||||| ValThrGluHisGlnAsnSerAspAsnLeuThrLeuLysAsnPheProPheAlaAl 2575946 : GTTACTGAACATCAAAACTCTGATAATCTTACTCTGAAGAACTTTCCATTTGCTGC : 2576002 165 : aSerTyrProIleThrPheTyrLysPheProPheTyrGlu >>>> Target In : 178 |!!!||||||! ...||||||...||||||||||||||| 68 b aThrTyrProThrValPheTyrAsnPheProPheTyrGlu++ 2576003 : AACATATCCTACagttttttataactttcctttttacgaggt.............. : 2576046 179 : tron 3 >>>> IleAlaTyrIleSerGlnIleLeuAlaThrSerIleCysCysL : 192 p |||||||||:!:|||||| |||||||||||||||||||||| ++IleAlaTyrValSerGlnAlaLeuAlaThrSerIleCysCysL 2576047 : ...........agATTGCATATGTGTCTCAAGCGCTAGCAACCAGTATTTGTTGTC : 2576154 193 : euMetMetLeuAlaIleAspSerLeuIleAlaThrAlaLeuLeuHisThrCysGly : 210 |||||!!:||||||! !|||.!!|||||||||||||||:!!||||||||||||||| euMetIleLeuAlaThrAspGlyLeuIleAlaThrAlaValLeuHisThrCysGly 2576155 : TAATGATACTTGCAACTGATGGTCTAATTGCAACTGCTGTGCTCCATACATGTGGG : 2576208 211 : HisPheThrValLeuLysGluAsnLeuLysAsnLeuAspThrTyrIleTyrAspLe : 229 ||||||.!!||||||||||||||||||:::...|||||| !! !|||||| !:! HisPheAlaValLeuLysGluAsnLeuArgArgLeuAspLeuCysIleTyrArgVa 2576209 : CATTTTGCAGtacttaaagaaaatttaaggcgACTTGATTTATGCATTTATCGCGT : 2576265 230 : uThr >>>> Target Intron 4 >>>> LysThrAsnLeuLysThrAsnSe : 238 ! ! 61 bp !!.!!:!!!!:!!!.!||||| lCys-+ ++ValAsnSerPheGluAsnAsnSe 2576266 : ATGTat.........................agGTGAATAGTTTTGAAAACAATTC : 2576353 239 : rLysTyrIleAsnLysAsnLeuTyrGluIleLysThrGlnIleIleTyrIleIleL : 257 ||||:!!|||||| !!!.||||||:!!||||||..!||||||! !:!!:!!|||| rLysHisIleAsnAlaLysLeuTyrGlnIleLysValGlnIleThrHisLeuIleL 2576354 : GAAACATATAAACGCGAAATTATACCAGATAAAAGTTCAAATCACACACTTAATTA : 2576410 258 : ysHisHisGlnLeuValLeu{Tr} >>>> Target Intron 5 >>>> {p} : 264 |||||||||||:!!||||||{||} 65 bp {|} ysHisHisGlnValValLeu{Tr}++ ++{p} 2576411 : AACATCATCAAGTAGTCCTt{tg}gt.........................ag{G} : 2576498 265 : PheCysAspAsnMetGluLysAsnPheHisLeuIleLeuPheLeuGlnAlaIleTh : 283 |||||||||||||||||||||||||||||||||!!:|||.!!||||||.!!!!:|| PheCysAspAsnMetGluLysAsnPheHisLeuMetLeuLeuLeuGlnThrMetTh 2576499 : TTTTGTGATAAtatggaaaagaattttcaccTAATGCTCCTTTTACAAACTATGAC : 2576553 284 : rSerSerLeuIleIleCysPheValGlyPheGlnIleSerIle >>>> Target : 298 ||||||||||!!:|||||||||||||||||||||:!!|||! ! 8 rSerSerLeuMetIleCysPheValGlyPheGlnValSerThr++ 2576554 : CAGTAGTCTTATGATTTGTTTCGTCGGATTTCAAGTTTCGACCgt........... : 2576600 299 : Intron 6 >>>> AlaLeuThrGluArgSerLysPheLeuGluSerPheSerH : 311 6 bp .!!|||||||||!:!|||||| :::::: |||| ++ThrLeuThrGluGlnSerLysValIleLysPheAlaSerH 2576601 : ..............agACACTAACAGAACAATctaaagtaattaaatttgcttcTC : 2576723 312 : isLeuIleValSerLeuPheGlnLeuLeuLeuPheCysPheProGlyAspIleLeu : 329 |||||||||||!::||||||||||||||||||||||||||||||||||||!!:||| isLeuIleValThrLeuPheGlnLeuLeuLeuPheCysPheProGlyAspMetLeu 2576724 : ACTTAATCGTGAcgctttttcaattattactcTTTTGTTTCCCTGGGGATATGCTA : 2576777 330 : IleArgGln >>>> Target Intron 7 >>>> SerPheAsnIleSerIle : 338 ||||||||| 69 bp ||||||!:!||||||! ! IleArgGln++ ++SerPheSerIleSerThr 2576778 : ATCCGACAGgt.........................agAGTTTCAGTATAAGTACA : 2576873 339 : AlaAlaTyrSerMetGlnTrpTyrGlnLeuProThrPheIleLysAspGluIleCy : 357 ||||||||||||!!:||||||! !|||||||||||||||:!!|||||||||:!!|| AlaAlaTyrSerIleGlnTrpCysGlnLeuProThrPheLeuLysAspGluValCy 2576874 : GCTGCATATTCAATACAGTGGTGTCAACTGCCAACTTTTCTTAAAGACGAAGTATG : 2576930 358 : sMetIleIleLeuArgSerGlnArgProSerPheIleThrAlaGlyLysLeuTyrI : 376 ||||||||||||||||||||||||| !!|||!:!|||||||||||||||:!!|||: sMetIleIleLeuArgSerGlnArgSerSerTyrIleThrAlaGlyLysIleTyrV 2576931 : CATGATTATACTACGTTCTCAAAGATCTAGCTACATTACTGCGGGAAAGATATATG : 2576987 377 : leMetHisLeuGluAsnPheThrAla >>>> Target Intron 8 >>>> I : 385 !:|||||||||||||||||||||||| 110 bp | alMetHisLeuGluAsnPheThrAla++ ++I 2576988 : TGAtgcatttggaaaatttcaccgcggt.........................agA : 2577124 386 : leLeuSerThrAlaPheSerTyrPheMetMetLeuGlnSerPheAsnThrGluAla : 403 ||||||||||||||! !||||||||||||||||||||||||||||||:!!|||||| leLeuSerThrAlaCysSerTyrPheMetMetLeuGlnSerPheAsnSerGluAla 2577125 : TACTCAGTACTGCATGTTCATACTTTATGATGCTTCAAAGCTTCAATTCAGAAGCT : 2577178 vulgar: AmOr120 0 403 . KQ414615.1 2575347 2577180 + 1484 M 65 195 S 0 2 5 0 2 I 0 74 3 0 2 S 1 1 M 50 150 S 0 2 5 0 2 I 0 80 3 0 2 S 1 1 M 28 84 G 0 3 M 32 96 5 0 2 I 0 64 3 0 2 M 53 159 5 0 2 I 0 57 3 0 2 M 33 99 S 0 2 5 0 2 I 0 61 3 0 2 S 1 1 M 33 99 5 0 2 I 0 82 3 0 2 M 35 105 5 0 2 I 0 65 3 0 2 M 52 156 5 0 2 I 0 106 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414615.1 exonerate:protein2genome:local gene 2575348 2577180 1484 + . gene_id 1 ; sequence AmOr120 ; gene_orientation + KQ414615.1 exonerate:protein2genome:local cds 2575348 2575544 . + . KQ414615.1 exonerate:protein2genome:local exon 2575348 2575544 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2575545 2575546 . + . intron_id 1 ; splice_site "GT" KQ414615.1 exonerate:protein2genome:local intron 2575545 2575622 . + . intron_id 1 KQ414615.1 exonerate:protein2genome:local splice3 2575621 2575622 . + . intron_id 0 ; splice_site "ag" KQ414615.1 exonerate:protein2genome:local cds 2575623 2575775 . + . KQ414615.1 exonerate:protein2genome:local exon 2575623 2575775 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2575776 2575777 . + . intron_id 2 ; splice_site "GT" KQ414615.1 exonerate:protein2genome:local intron 2575776 2575859 . + . intron_id 2 KQ414615.1 exonerate:protein2genome:local splice3 2575858 2575859 . + . intron_id 1 ; splice_site "ag" KQ414615.1 exonerate:protein2genome:local cds 2575860 2576043 . + . KQ414615.1 exonerate:protein2genome:local exon 2575860 2576043 . + . insertions 3 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2576044 2576045 . + . intron_id 3 ; splice_site "gt" KQ414615.1 exonerate:protein2genome:local intron 2576044 2576111 . + . intron_id 3 KQ414615.1 exonerate:protein2genome:local splice3 2576110 2576111 . + . intron_id 2 ; splice_site "AG" KQ414615.1 exonerate:protein2genome:local cds 2576112 2576270 . + . KQ414615.1 exonerate:protein2genome:local exon 2576112 2576270 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2576271 2576272 . + . intron_id 4 ; splice_site "AT" KQ414615.1 exonerate:protein2genome:local intron 2576271 2576331 . + . intron_id 4 KQ414615.1 exonerate:protein2genome:local splice3 2576330 2576331 . + . intron_id 3 ; splice_site "AG" KQ414615.1 exonerate:protein2genome:local cds 2576332 2576432 . + . KQ414615.1 exonerate:protein2genome:local exon 2576332 2576432 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2576433 2576434 . + . intron_id 5 ; splice_site "gt" KQ414615.1 exonerate:protein2genome:local intron 2576433 2576497 . + . intron_id 5 KQ414615.1 exonerate:protein2genome:local splice3 2576496 2576497 . + . intron_id 4 ; splice_site "AG" KQ414615.1 exonerate:protein2genome:local cds 2576498 2576597 . + . KQ414615.1 exonerate:protein2genome:local exon 2576498 2576597 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2576598 2576599 . + . intron_id 6 ; splice_site "GT" KQ414615.1 exonerate:protein2genome:local intron 2576598 2576683 . + . intron_id 6 KQ414615.1 exonerate:protein2genome:local splice3 2576682 2576683 . + . intron_id 5 ; splice_site "AG" KQ414615.1 exonerate:protein2genome:local cds 2576684 2576788 . + . KQ414615.1 exonerate:protein2genome:local exon 2576684 2576788 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2576789 2576790 . + . intron_id 7 ; splice_site "GT" KQ414615.1 exonerate:protein2genome:local intron 2576789 2576857 . + . intron_id 7 KQ414615.1 exonerate:protein2genome:local splice3 2576856 2576857 . + . intron_id 6 ; splice_site "AG" KQ414615.1 exonerate:protein2genome:local cds 2576858 2577013 . + . KQ414615.1 exonerate:protein2genome:local exon 2576858 2577013 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2577014 2577015 . + . intron_id 8 ; splice_site "gt" KQ414615.1 exonerate:protein2genome:local intron 2577014 2577123 . + . intron_id 8 KQ414615.1 exonerate:protein2genome:local splice3 2577122 2577123 . + . intron_id 7 ; splice_site "AG" KQ414615.1 exonerate:protein2genome:local cds 2577124 2577180 . + . KQ414615.1 exonerate:protein2genome:local exon 2577124 2577180 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local similarity 2575348 2577180 1484 + . alignment_id 1 ; Query AmOr120 ; Align 2575348 1 195 ; Align 2575624 67 150 ; Align 2575861 118 84 ; Align 2575948 146 96 ; Align 2576112 178 159 ; Align 2576332 231 99 ; Align 2576499 265 99 ; Align 2576684 298 105 ; Align 2576858 333 156 ; Align 2577124 385 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr115 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 218 Query range: 0 -> 222 Target range: 203453 -> 204218 1 : MetAspPheAlaMetGlyTrpAsnArgPheAsnLeuThrLeuLeuGlyValTyrProG : 20 .!.!!:!::|||:!: !! !||||||! !!:!|||! !:!!:!!|||:!!!:: !| PheGluTrpAlaValArgMetAsnArgSerSerLeuArgIleIleGlyLeuTrpPheG 203454 : TTCGAATGGGCAGTTCGGATGAATCGCTCTAGTTTGAGAATAATTGGTCTTTGGTTTG : 203511 21 : luProArgLysMetSerArgAsnSerArgLeuMetSerSerLeuIlePheTrpPheTh : 39 || ! ! ! ... ... ||| ... ! !.!. !!.!!.. luGluAspHisAlaGlyThrMetLysPheLeuArgLysLeuArgAsnMetGlyIleVa 203512 : AAGAAGATCACGCTggaacgatgaaatttttaagaaaattacgcAATATGGGGATCGT : 203568 40 : rThrLeuValThrPheThrPheIleCysAlaProGlnThrAlaAsnLeuIleLeuLys : 58 ! !:!!:!! !|||..!! !:!! !||| ! !::!|||||| !:!! lLeuIleIleLeuPheValCysVal---LeuProCysLeuTyrSerLeuIleLysGln 203569 : GCTGATAATCCTCTTCGTTTGTGTA---CTTCCTTGCCTCTACTCTTTGATCAAACAA : 203622 59 : SerThrSerLeuAspGluValIleGluAsnLeuSerIleAsnIleProIleValPheA : 78 !!! !|||||| ! !||||||!!:||||||||| !!.!||||||:!:..!.!.. CysAspSerLeuMetAlaValIleAspAsnLeuSerTyrThrIleProLeuThrIleT 203623 : TGTGACAGTTTAATGGCGGTGATAGATAATCTTTCATATACTATTCCTTTGACAATAA : 203682 79 : laLeuIleLysGlnIleValLeuArgTyrTyrLysLys{A} >>>> Target Int : 91 !!|||!!:||| ! ||||||:!! ! ! ! |||:::{!} 93 bp hrLeuMetLysTyrIleValIleLeuSerLysLysGlu{V}++ 203683 : CACTGATGAAGTATATCGTTATATTGAGTAAAAaggaa{g}gt............... : 203724 92 : ron 1 >>>> {la}LeuThrGluLeuLeuGlyGluMetLeuAlaAspTrpSerGly : 105 {.!}||| ! !|||:!!..! !!!: !! !||||||:!! ! ++{al}LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLys 203725 : ..........ag{TT}CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAG : 203856 106 : ProIleGlyAspGlnAspArgGluThrMetLeuArgAsnAlaArgLeuSerArgAlaI : 125 !! ! !||| !!:|||!!:..!|||:!!!:!....!!|||:!!!!!||||||! LeuLysThrAspPheGluArgAspValMetIleGlnArgThrArgIleThrArgAlaT 203857 : TTGAAAACGGATTTCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAA : 203916 126 : leSerIleValCysSerThrLeuThrTyrPheMetLeuLeuAlaPheValSerLeuGl : 144 !||||||:!! !!! !.!!|||! !!:! ! :!!:!! !.!.:!! !|||! hrSerIleLeuSerTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuPr 203917 : CCAGTATACTGAGTTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACC : 203973 145 : nValTrpSerAsnAlaGluAsn<-><->AlaSerGluThrAspLeuGlyGlyLeuLeu : 161 ! ! .!!! !.!! !.. .!!!:!||||||:!!:!! ! !|||!!! oArgThrGlyIleThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPhe 203974 : AAGAACCGGTATTACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTT : 204030 162 : His<->ProAlaThrPheProTyrGluThrSerLysSerProAsnTyrGluIleThrT : 180 ! |||... ::: |||::: |||:!!!!!||| !!!:!||||||! !! ProValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetP 204031 : CCGGTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTGAGATAATGT : 204090 181 : rpLeuGlyGlnLeuMetGlyThrValLeuThrAlaIleCysTyrSerCysPheAspTh : 199 ::||| !|||:!! ! !||||||! !|||:!!||||||! ! !! !!|||!. heLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAs 204091 : TTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAA : 204147 200 : rPheLeuAlaValLeuValLeuHisLeuCysGlyGlnLeuThrValLeuGlyThrAla : 218 !|||!!!!.!:!!|||:!!||||||:!!|||||||||||| ! !||| !!||| ! nPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArg 204148 : TTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGA : 204204 219 : LeuGluAspLeu : 222 |||! !:!!:!! LeuAlaAsnIle 204205 : CTTGCAAACATA : 204218 vulgar: AmOr115 0 222 . KQ414617.1 203453 204218 + 218 M 47 141 G 1 0 M 42 126 S 0 1 5 0 2 I 0 89 3 0 2 S 1 2 M 60 180 G 0 6 M 11 33 G 0 3 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203454 204218 218 + . gene_id 1 ; sequence AmOr115 ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203454 203721 . + . KQ414617.1 exonerate:protein2genome:local exon 203454 203721 . + . insertions 0 ; deletions 1 KQ414617.1 exonerate:protein2genome:local splice5 203722 203723 . + . intron_id 1 ; splice_site "gt" KQ414617.1 exonerate:protein2genome:local intron 203722 203814 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 203813 203814 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 203815 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 203815 204218 . + . insertions 9 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203454 204218 218 + . alignment_id 1 ; Query AmOr115 ; Align 203454 1 141 ; Align 203595 49 126 ; Align 203817 92 180 ; Align 204003 152 33 ; Align 204039 163 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr114 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 152 -> 229 Target range: 203984 -> 204218 153 : ValPheLeuArgTyrIleSerMetLysTyrAsnGluAsnLysLeuLeu<->PheArgA : 171 :!! ! !||||||:!!!!!! :!! !||| !!!.||||||!!! ! ! . IleThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProT 203985 : ATTACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaa : 204042 172 : laTyrPheProTyrAspThrThrValSerProAsnTyrGluLeuThrIleLeuGlyGl : 190 ..|||::: |||||| :!!! !!!!||| !!!:!|||:!!! !.!!||| !|| hrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGl 204043 : cttattatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCA : 204099 191 : nPheValAlaAlaLeuTyrAlaAlaThrSerTyrThrAlaValAspThrPheValAla : 209 |.!.!.!.!! !:!!! !||| !!!!|||! !!.!||||||!.!||| !!!.! nMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGly 204100 : AATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGA : 204156 210 : MetLeuIleLeuHisValCysGlyGlnLeuSerGlyIleLysAsnGluLeuSerArgL : 229 !!:||||||||||||:!!||||||||||||..!..!:!!:::!....!|||:!!!.!: IleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnI 204157 : ATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACA : 204216 230 : eu : 229 !! le 204217 : TA : 204218 vulgar: AmOr114 152 229 . KQ414617.1 203984 204218 + 122 M 16 48 G 0 3 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203985 204218 122 + . gene_id 1 ; sequence AmOr114 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203985 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 203985 204218 . + . insertions 3 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203985 204218 122 + . alignment_id 1 ; Query AmOr114 ; Align 203985 153 48 ; Align 204036 169 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr119 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence Model: protein2genome:local Raw score: 1153 Query range: 10 -> 415 Target range: 453819 -> 459222 11 : ThrTyrSerHisAspThrAlaThrSerArgLysLeuPheTyrLeuLeuVal<-><->V : 28 :!!||||||:!!|||:!!.!! ! !!|||!:! !||| |||:!!! ! | SerTyrSerTyrAspSerThrLeuProArgArgThrPheLeuLeuValGluSer***V 453820 : TCCTACTCATACGACTCAACCCTACCTCGAAGAACTTTTCTACTCGTCGAGTCGTAGG : 453877 29 : alValGlyGlyGlnMetAlaHisAlaSerGlyHisGluTrpMetLysSerIleArgTh : 47 ||! !||| ! !||||||:!!!.! !!|||||||||||||||!:!|||.!!||| alAspGlyLeuAlaMetAlaTyrValProGlyHisGluTrpMetArgSerPheArgGl 453878 : TAGATGGGTTAGCAATGGCTTATGTGCCTGGCCACGAATGGATGAGATCATTTCGACA : 453934 48 : rLeuThrSerIleLysIleAsnTyrLeu{Ly} >>>> Target Intron 1 >>> : 57 !|||! ! !:!!:!!|||!:!|||:!!{||} 140 bp nLeuIleHisValGlnIleSerTyrIle{Ly}++ 453935 : GTTGATTCATGTACAAATAAGTTACATA{AA}gt........................ : 453968 58 : > {s}TyrSerGlyLeuGlyGluIleAspSerSerCysSerArgIleLeuLysTyrA : 75 {|}|||||||||||| :::|||:::|||... !||| !.!!:!!! ! !| ++{s}TyrSerGlyLeuTrpLysIleGluSerLysHisSerSerPheMetThrIleA 453969 : .ag{A}TACAGTGGCCTctggaaaattgaatcgaaacACTCGTCGTTTATGACAATCG : 454158 76 : laTyrPheValTyrLysValTrpMetLeuValSerMetCysIleLeuAlaIleThrVa : 94 ||||||||!.!||||||:!!|||!!:|||:!!! !||| !:!!!!!|||:!!|||:! laTyrPheAlaTyrLysLeuTrpIleLeuIleMetMetAsnValPheAlaValThrIl 454159 : CTTACTTCGCGTACAAACTATGGATACTCATAATGATGAACGTATTCGCCGTCACTAT : 454215 95 : lPheAlaAspIleTyrThrAsnMetAspAsnLeuSerIleThrThrAspAspGlyCys : 113 !||||||||||||||| !|||||||||||||||||||||! !!:!|||||||||||| ePheAlaAspIleTyrGluAsnMetAspAsnLeuSerIleIleSerAspAspGlyCys 454216 : ATTCGCAGACATCTACGAGAACATGGACAACCTATCGATCATTAGCGACGACGGTTGT : 454272 114 : IlePheAlaGlyIlePheValValIlePheLysAlaMetAsnLeuGlnIle{G} >> : 131 .!!.!!|||||||||.!!||||||||||||||||||||||||! !||||||{!} PheLeuAlaGlyIleLeuValValIlePheLysAlaMetAsnTyrGlnIle{H}-+ 454273 : TTCCTCGCTGGAATACTCGTCGTGATTTTTAAGGCTATGAATTACCAAATT{C}at.. : 454329 132 : >> Target Intron 2 >>>> {ln}LeuGluSerValLysLysIleIleAspLy : 141 1974 bp {!.} !|||!!! !||| ! ||||||:!!:: ++{is}ThrGluThrAsnLysTyrIleIleAsnAr 454330 : .......................ag{AT}ACCGAAACGAATAAATACATCATCAACCG : 456330 142 : sTyrHisThrArgAsnLysValMetPhePheGlyPheCysValIleGlyAlaCysLeu : 160 !|||::: |||||||||:!:|||!:!|||||| !!:!!:!!|||..! !||| gTyrTyrLysPheAsnLysValValPheTyrGlyPheSerMetLeuGlyCysValLeu 456331 : ATactataaatttaacaaagtaGTTTTCTACGGGTTCAGCATGTTAGGATGCGTTTTA : 456387 161 : GlyPheAlaLeuLeuCysPheThrProMetGluAsnGlyLeuProIleArgAlaLysT : 180 |||.!.|||||||||! !|||:!!|||:!!:!!||||||||||||||||||||||||| GlyIleAlaLeuLeuPhePheSerProLeuGlnAsnGlyLeuProIleArgAlaLysT 456388 : GGAATAGCTCTGCTATTTTTCTCGCCTCTGCAGAACGGTTTGCCCATCAGAGCAAAGT : 456447 181 : yrProLeuAsnThrThrValSerProTrpHisGluIleSerPhePheValGluThrCy : 199 |||||!!!|||||||||:!!||||||!::!..||||||.!!!!. !|||||||||! yrProPheAsnThrThrIleSerProPheArgGluIleGlyLeuAlaValGluThrPh 456448 : ATCCTTTTAACACCACTATATCTCCTTTCCGAGAGATTGGTTTGGCTGTCGAAACTTT : 456504 200 : sAlaValSerGlyGlyLeuLeuGlyIleIleValMetAspSerMetThrThrPheLys : 218 !|||||||||||||||||||||.!!|||:!!!.!||||||!:!!!:|||.!!.!.! ! eAlaValSerGlyGlyLeuLeuSerIleValAlaMetAspAsnIleThrAlaMetMet 456505 : TGCTGTTTCTGGTGGTTTATTGAGCATAGTTGCCATGGACAATATCACTGCAATGATG : 456561 219 : CysSerLeuIleThrMetLeuLeuAspAlaLeuSerValAsnPheGluAsnCysAsnG : 238 ||||||! !|||||| ! !!!!||| !|||!:!||| !||||||!!.|||!.!. CysSerGlnIleThrAlaGlnPheAspMetLeuAsnValLeuPheGluLysCysThrS 456562 : TGCAGCCAGATCACTGCTCAGTTCGATATGTTGAACGTACTTTTTGAGAAGTGTACTA : 456621 239 : lyGluThr >>>> Target Intron 3 >>>> LysArgThrIleCysAsnArg : 247 !!:!!..! 834 bp ||| ... erGlnVal+- ++ThrAspGluIlePheLysThr 456622 : GTCAAGTGga.........................agaccgatgaaattttcaagaca : 457482 248 : HisGlyLysGluGluArgAsnAspAsnAsnAsnArgPheLeuAspArgTyrLysLysC : 267 .!. !!!...! !.!!!. :!!:!!|||! !|||||| !|||||||||! | GluThrAsnArgIleAsnLysThrHisAspAsnThrPheLeuArgArgTyrLysThrC 457483 : gAAACCAATCGAATTAACAAGACGCACGACAACACGTTTCTTCGTCGTTACAAGACCT : 457542 268 : ysValGlnPheHisGlnArgLeuValValIleSerArgAspTyrAsnLysIleTyrSe : 286 ||:!!||||||||||||||||||:!! !|||!!!!:!|||||||||!:!|||||||| ysLeuGlnPheHisGlnArgLeuIleSerIleThrLysAspTyrAsnArgIleTyrSe 457543 : GTCTGCAATTTCATCAGAGATTGATCTCCATAACCAAAGATTACAACAGAATCTACAG : 457599 287 : rLeuSerMetLeuValGlnMetIleSerSerThrSerIleIleCysLeuThrGlyPhe : 305 |! !||||||!!!||||||||||||||||||||||||||||||||||||||||||||| rSerSerMetPheValGlnMetIleSerSerThrSerIleIleCysLeuThrGlyPhe 457600 : CTCGAGCATGTTCGTCCAGATGATCTCCAGCACTTCGATTATTTGCTTAACTGGTTTC : 457656 306 : GlnAlaValVal >>>> Target Intron 4 >>>> ValGlyGlyGlnSerSe : 315 |||||||||||| 67 bp ||||||||||||||||| GlnAlaValVal++ ++ValGlyGlyGlnSerSe 457657 : CAAGCTGTCGTGgt.........................agGTCGGAGGGCAGAGCTC : 457753 316 : rAsnIleMetLysTyrGlyIleTyrLeuSerAlaAlaMetSerGlnLeuPheTyrIle : 334 |:!!|||||||||!:!|||||||||||||||||||||!!:|||||||||!!.|||||| rAspIleMetLysPheGlyIleTyrLeuSerAlaAlaIleSerGlnLeuLeuTyrIle 457754 : GGACATCATGAAGTTCGGGATCTACTTGAGCGCGGCCATATCTCAGCTGTTGTACATC : 457810 335 : CysTrpLeuGlyAsnGluLeuGlyTyrAla >>>> Target Intron 5 >>>> : 345 |||||||||||||||||||||.!!|||:!! 87 bp CysTrpLeuGlyAsnGluLeuSerTyrSer++ + 457811 : TGTTGGCTGGGGAACGAGCTGAGCTACTCGgt.........................a : 457928 346 : SerSerThrLeuAspLysAsnGlnTrpPheSerGlyTrpCysAsnGluArgLeuThr : 363 ||||||..!:!!|||!:!!:!||||||.!!||||||||| !:!!|||!.!|||||| +SerSerValIleAspArgSerGlnTrpLeuSerGlyTrpAsnHisGluHisLeuThr 457929 : gAGTTCGGTGATAGACAGGAGTCAGTGGCTCTCCGGTTGGAATCACGAACATTTGACT : 457984 364 : GlyIleGlyGlnValPheThrLeuSerThrValPheThrArgLysSerIleIleLeuA : 383 .!!|||! !:!!:!!|||||||||||||||:!!|||||||||:!!||||||! |||! SerIleValLysIlePheThrLeuSerThrMetPheThrArgGlnSerIleThrLeuL 457985 : AGTATCGTGAAAATCTTCACTCTGTCCACCATGTTCACCAGACAGTCGATTACGTTGA : 458044 384 : rgAlaSerValPheTyrValLeuSerLeuGluThrPheIleAla >>>> Target : 398 :!|||.!!|||||||||||||||||||||||||||||||||||| 108 ysAlaGlyValPheTyrValLeuSerLeuGluThrPheIleAla++ 458045 : AGGCTGGCGTATTTTATGTACTATCTCTGGAGACTTTTATCGCGgt............ : 458091 399 : Intron 6 >>>> IleIleLysArgSerTyrSerPhePheThrLeuLeuAsnAsnM : 412 0 bp |||:!!!:!|||||||||||| !!||||||||||||||||||| ++IleValArgArgSerTyrSerValPheThrLeuLeuAsnAsnM 458092 : .............agATCGTAAGGAGGTCCTACTCAGTCTTCACTCTATTGAACAACA : 459211 413 : etAspLeuThr : 415 || !!! !||| etHisSerThr 459212 : TGCATTCGACG : 459222 vulgar: AmOr119 10 415 . KQ414618.1 453819 459222 + 1153 M 17 51 G 0 6 M 29 87 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 73 219 S 0 1 5 0 2 I 0 1970 3 0 2 S 1 2 M 109 327 5 0 2 I 0 830 3 0 2 M 69 207 5 0 2 I 0 63 3 0 2 M 35 105 5 0 2 I 0 83 3 0 2 M 53 159 5 0 2 I 0 1076 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 453820 459222 1153 + . gene_id 1 ; sequence AmOr119 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 453820 453965 . + . KQ414618.1 exonerate:protein2genome:local exon 453820 453965 . + . insertions 6 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 453966 453967 . + . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 453966 454105 . + . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 454104 454105 . + . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 454106 454326 . + . KQ414618.1 exonerate:protein2genome:local exon 454106 454326 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 454327 454328 . + . intron_id 2 ; splice_site "AT" KQ414618.1 exonerate:protein2genome:local intron 454327 456300 . + . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 456299 456300 . + . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 456301 456629 . + . KQ414618.1 exonerate:protein2genome:local exon 456301 456629 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 456630 456631 . + . intron_id 3 ; splice_site "GA" KQ414618.1 exonerate:protein2genome:local intron 456630 457463 . + . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 457462 457463 . + . intron_id 2 ; splice_site "Ag" KQ414618.1 exonerate:protein2genome:local cds 457464 457670 . + . KQ414618.1 exonerate:protein2genome:local exon 457464 457670 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 457671 457672 . + . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 457671 457737 . + . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 457736 457737 . + . intron_id 3 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 457738 457842 . + . KQ414618.1 exonerate:protein2genome:local exon 457738 457842 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 457843 457844 . + . intron_id 5 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 457843 457929 . + . intron_id 5 KQ414618.1 exonerate:protein2genome:local splice3 457928 457929 . + . intron_id 4 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 457930 458088 . + . KQ414618.1 exonerate:protein2genome:local exon 457930 458088 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 458089 458090 . + . intron_id 6 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 458089 459168 . + . intron_id 6 KQ414618.1 exonerate:protein2genome:local splice3 459167 459168 . + . intron_id 5 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 459169 459222 . + . KQ414618.1 exonerate:protein2genome:local exon 459169 459222 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 453820 459222 1153 + . alignment_id 1 ; Query AmOr119 ; Align 453820 11 51 ; Align 453877 28 87 ; Align 454107 58 219 ; Align 456303 132 327 ; Align 457464 241 207 ; Align 457738 310 105 ; Align 457930 345 159 ; Align 459169 398 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr116 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 277 -> 349 Target range: 3178375 -> 3178588 278 : IleIlePheAspPheThrLysGlnIleGlnAspIlePheGlyIleIleIlePhePh : 296 ...||| ||||||:!! !:!:.!. !:!:||| ! !!!:||||||.! PheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLe 3178376 : ttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCT : 3178430 297 : eGlnLeuPheValAsnCysIleIleValCysLeuAlaAlaPheAsnLeuSerGlnI : 315 .|||!!!! !:!!!:!! ! :!::!!||||||::! !!:!!!.:!!||| !| uGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrI 3178431 : GCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGA : 3178487 316 : leLysAsnTyrIleThrProGluPhePheGlySerLeuLeuTyrIleCysCysMet : 333 || ||| .!!!:! !.!.||| !! !!!!! !! !|||:!!||||||||| le---AsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMet 3178488 : TT---AATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATG : 3178538 334 : IleTyrGlnIlePheIleTyrCysTrpHisGlyAsnGluLeuTyrLeu : 349 :!! |||:!:!:!:!!||||||||| !|||||||||:!! ||| LeuThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeu 3178539 : CTCACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTG : 3178588 vulgar: AmOr116 277 349 . KQ414646.1 3178375 3178588 + 138 M 38 114 G 1 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178376 3178588 138 + . gene_id 1 ; sequence AmOr116 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178376 3178588 . + . KQ414646.1 exonerate:protein2genome:local exon 3178376 3178588 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3178376 3178588 138 + . alignment_id 1 ; Query AmOr116 ; Align 3178376 278 114 ; Align 3178490 317 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr116 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 281 -> 349 Target range: 3155808 -> 3156009 282 : PheThrLysGlnIleGlnAspIlePheGlyIleIleIlePhePheGlnLeuPheVa : 300 |||||| ..!|||.!.!!: !|||! !!!: |||||| !|||!!! || PheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAlaVa 3155809 : TTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGT : 3155863 301 : lAsnCysIleIleValCysLeuAlaAlaPheAsnLeuSerGlnIleLysAsnTyrI : 319 |!:! :!: :!!|||!!! ! !!:! |||!!! ! ..!:!! ! lSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGly---SerAspValT 3155864 : GAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGA---TCAGATGTGA : 3155917 320 : leThrProGluPhePheGlySerLeuLeuTyrIleCysCysMetIleTyrGlnIle : 337 !! !..!!:! ! ! !! !:!!:!!|||! ! !!||||||:!! |||||| hrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIle 3155918 : CGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATA : 3155971 338 : PheIleTyrCysTrpHisGlyAsnGluLeuTyrLeu : 349 |||||||||||||||:!!|||||||||:!! ! ||| PheIleTyrCysTrpTyrGlyAsnGluValLysLeu 3155972 : TTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTG : 3156009 vulgar: AmOr116 281 349 . KQ414646.1 3155808 3156009 + 110 M 33 99 G 1 0 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155809 3156009 110 + . gene_id 2 ; sequence AmOr116 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155809 3156009 . + . KQ414646.1 exonerate:protein2genome:local exon 3155809 3156009 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3155809 3156009 110 + . alignment_id 2 ; Query AmOr116 ; Align 3155809 282 99 ; Align 3155908 316 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr116 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 285 -> 349 Target range: 3150616 -> 3150805 286 : IleGlnAspIlePheGlyIleIleIlePhePheGlnLeuPheValAsnCysIleIl : 304 !!:|||!!:! ||| !! |||||| ! ! ||||||!!. !!:! :!::! MetGlnGluLysPheArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuVa 3150617 : ATGCAAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGGT : 3150671 305 : eValCysLeuAlaAlaPheAsnLeuSerGlnIleLysAsnTyrIleThrProGluP : 323 !||||||!!! ! !!:!.!.|||:!!.!.! |||!:! !!:!!! lValCysPheIleLeuTyrGluLeuAlaAsnThrProPro---IleSerSerLysT 3150672 : AGTGTGTTTCATCCTGTACGAATTGGCGAACACGCCTCCA---ATCAGCTCCAAGT : 3150725 324 : hePheGlySerLeuLeuTyrIleCysCysMetIleTyrGlnIlePheIleTyrCys : 341 :!.!. !! !:!!||||||:!:..!||||||!!: |||||||||.!!|||||| yrLeuGlnPheValLeuTyrLeuAlaCysMetMetThrGlnIlePhePheTyrCys 3150726 : ACCTGCAATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATCTTCTTTTACTGC : 3150779 342 : TrpHisGlyAsnGluLeuTyrLeu : 349 |||:!!|||.!.:!!||| ! ||| TrpTyrGlyGluGlnLeuLysLeu 3150780 : TGGTACGGCGAGCAGTTGAAACTG : 3150805 vulgar: AmOr116 285 349 . KQ414646.1 3150616 3150805 + 108 M 32 96 G 1 0 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150617 3150805 108 + . gene_id 3 ; sequence AmOr116 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150617 3150805 . + . KQ414646.1 exonerate:protein2genome:local exon 3150617 3150805 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3150617 3150805 108 + . alignment_id 3 ; Query AmOr116 ; Align 3150617 286 96 ; Align 3150713 319 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr114 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 147 -> 239 Target range: 3164352 -> 3164628 148 : ValValAlaPheTyrValPheLeuArgTyrIleSerMetLysTyrAsnGluAsnLy : 166 :!! !||||||!:::!!!:!:!!|||! :!!! !! ! !:!!:!...!..|| IleCysAlaPheTrpIleTyrValArgSerLeuLeuThrAspPheSerSerArgLy 3164353 : ATTTGTGCGTTCTGGATATACGTGAGATCGCTTTTGACAGATTTTAGTAGTAGAAA : 3164407 167 : sLeuLeuPheArgAlaTyrPheProTyrAspThrThrValSerProAsnTyrGluL : 185 ||||:!!|||||||||!::!!.||||||||| !:!! !:!!|||! !!:! | sLeuMetPheArgAlaTrpLeuProTyrAspTyrSerProAlaProIlePheIleL 3164408 : ACTGATGTTTCGAGCATGGTTACCCTACGATTACTCCCCTGCGCCCATTTTTATCC : 3164464 186 : euThrIleLeuGlyGlnPheValAlaAlaLeuTyrAlaAlaThrSerTyrThrAla : 203 |||||.!!:!! !||| !:!!|||||| ! ..!..!|||||| !..!.!! euThrPheValHisGlnAlaIleAlaAlaThrIleCysCysThrSerSerValThr 3164465 : TTACCTTCGTCCATCAAGCTATAGCCGCGACGATATGTTGCACTTCGAGCGTCACT : 3164518 204 : ValAspThrPheValAlaMetLeuIleLeuHisValCysGlyGlnLeuSerGlyIl : 222 ||||||:!!.!. !.!! |||:!::!!:!!:!!! ! !!|||!!!..! !:! ValAspSerLeuTyrThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLe 3164519 : GTGGATTCTCTATACACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACT : 3164575 223 : eLysAsnGluLeuSerArgLeuProThrTyrAspLysLysAspLeuLysArg : 239 !:!!:!!...|||!!!!.!:!! !||| ! .!. ! ! ..!:!!|||!:! uGluHisArgLeuArgAsnValLysThrGluGlnAspAspSerValLysGln 3164576 : AGAACATCGTCTAAGGAACGTTAAAACTGAGCAGGATGACTCTGTGAAGCAA : 3164628 vulgar: AmOr114 147 239 . KQ414646.1 3164352 3164628 + 133 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164353 3164628 133 + . gene_id 1 ; sequence AmOr114 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164353 3164628 . + . KQ414646.1 exonerate:protein2genome:local exon 3164353 3164628 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164353 3164628 133 + . alignment_id 1 ; Query AmOr114 ; Align 3164353 148 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr114 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 147 -> 239 Target range: 3157824 -> 3158100 148 : ValValAlaPheTyrValPheLeuArgTyrIleSerMetLysTyrAsnGluAsnLy : 166 ::: ..!|||!:!:!!!:!:!!|||! :!!! !!!: ! !:!!:!.!.!..|| IleSerThrPhePheIleTyrValArgSerLeuLeuIleAspPheSerAsnArgLy 3157825 : atttctacGTTCTTTATATACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAA : 3157879 167 : sLeuLeuPheArgAlaTyrPheProTyrAspThrThrValSerProAsnTyrGluL : 185 ||||:!!|||||||||!::.!.||||||||| !:!! !:!!|||! !!:! | sLeuMetPheArgAlaTrpIleProTyrAspTyrSerProAlaProIlePheIleL 3157880 : ACTGATGTTTCGAGCATGGATACCCTACGATTACTCCCCTGCGCCCATTTTTATCC : 3157936 186 : euThrIleLeuGlyGlnPheValAlaAlaLeuTyrAlaAlaThrSerTyrThrAla : 203 ||||| !:!! !||| !:!!|||:!! ! ..!..!|||||| !..!.!! euThrSerValHisGlnAlaIleAlaSerThrIleCysCysThrSerThrValThr 3157937 : TTACCTCCGTCCATCAAGCTATAGCCTCGACGATATGTTGCACTTCGACCGTCACT : 3157990 204 : ValAspThrPheValAlaMetLeuIleLeuHisValCysGlyGlnLeuSerGlyIl : 222 |||||||||.!. !.!! |||:!::!!:!!:!!! ! !!|||!!!..! !:! ValAspThrLeuTyrThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLe 3157991 : GTGGATACTCTATACACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACT : 3158047 223 : eLysAsnGluLeuSerArgLeuProThrTyrAspLysLysAspLeuLysArg : 239 !:!!:!!...|||!!!!.!:!! !||| ! .!. ! ! ..!:!!|||!:! uGluHisArgLeuArgAsnValLysThrGluGlnAspAspSerValLysGln 3158048 : AGAACATCGTCTAAGGAACGTTAAAACTGAGCAGGATGACTCTGTGAAGCAA : 3158100 vulgar: AmOr114 147 239 . KQ414646.1 3157824 3158100 + 130 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157825 3158100 130 + . gene_id 2 ; sequence AmOr114 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3157825 3158100 . + . KQ414646.1 exonerate:protein2genome:local exon 3157825 3158100 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157825 3158100 130 + . alignment_id 2 ; Query AmOr114 ; Align 3157825 148 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr114 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 147 -> 239 Target range: 1946879 -> 1946603 148 : ValValAlaPheTyrValPheLeuArgTyrIleSerMetLysTyrAsnGluAsnLy : 166 ::: ..!|||!:!:!!!:!:!!|||! :!!! !!!: ! !:!!:!.!.!..|| IleSerThrPhePheIleTyrValArgSerLeuLeuIleAspPheSerAsnArgLy 1946879 : atttctacGTTCTTTATATACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAA : 1946825 167 : sLeuLeuPheArgAlaTyrPheProTyrAspThrThrValSerProAsnTyrGluL : 185 ||||:!!|||||||||!::.!.||||||||| !:!! !:!!|||! !!:! | sLeuMetPheArgAlaTrpIleProTyrAspTyrSerProAlaProIlePheIleL 1946824 : ACTGATGTTTCGAGCATGGATACCCTACGATTACTCCCCTGCGCCCATTTTTATCC : 1946768 186 : euThrIleLeuGlyGlnPheValAlaAlaLeuTyrAlaAlaThrSerTyrThrAla : 203 |||||.!!:!! !||| !:!!|||||| ! ..!..!|||||| !..!.!! euThrPheValHisGlnAlaIleAlaAlaThrIleCysCysThrSerSerValThr 1946767 : TTACCTTCGTCCATCAAGCTATAGCCGCGACGATATGTTGCACTTCGAGCGTCACT : 1946714 204 : ValAspThrPheValAlaMetLeuIleLeuHisValCysGlyGlnLeuSerGlyIl : 222 ||||||:!!.!. !.!! |||:!::!!:!!:!!! ! !!|||!!!..! !:! ValAspSerLeuTyrThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLe 1946713 : GTGGATTCTCTATACACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACT : 1946657 223 : eLysAsnGluLeuSerArgLeuProThrTyrAspLysLysAspLeuLysArg : 239 !:!!:!!...|||!!!!.!:!! !||| ! .!. ! ! ..!:!!|||!:! uGluHisArgLeuArgAsnValLysThrGluGlnAspAspSerValLysGln 1946656 : AGAACATCGTCTAAGGAACGTTAAAACTGAGCAGGATGACTCTGTGAAGCAA : 1946604 vulgar: AmOr114 147 239 . KQ414661.1 1946879 1946603 - 131 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946604 1946879 131 - . gene_id 1 ; sequence AmOr114 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946604 1946879 . - . KQ414661.1 exonerate:protein2genome:local exon 1946604 1946879 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1946604 1946879 131 - . alignment_id 1 ; Query AmOr114 ; Align 1946880 148 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr118 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 817 Query range: 143 -> 369 Target range: 1386567 -> 1387952 144 : GlnGlyLysPheLeuValArgMetGluPheProPheIleAlaThrIleSerProAr : 162 ||| |||||||||:::|||||||||||||||||| !||||||:!!|||||||| GlnArgLysPheLeuIleArgMetGluPheProPheGluAlaThrValSerProAr 1386568 : caaaggaaatttttaattagaatggAATTTCCTTTCGAAGCTACAGTCTCTCCACg : 1386622 163 : gTyrGluIleIleLeuIleThrGlnPheIlePheGluSerPheIleValTyrGlyA : 181 ||||||||||||||||:::...|||||||||||||||::!|||||||||||||||| gTyrGluIleIleLeuValValGlnPheIlePheGluAlaPheIleValTyrGlyA 1386623 : ttatgaaattattctagttgtacaatttatattcgaagcATTTATAGTTTATGGAG : 1386679 182 : laAlaThrSerIleAlaLeuIleAlaAlaLeu >>>> Target Intron 1 > : 192 ||||||||||||||||||||||||||!.!||| 399 bp laAlaThrSerIleAlaLeuIleAlaValLeu++ 1386680 : CAGCTACATCGATAGCCCTAATTGCAGTACTAgt...................... : 1386714 193 : >>> IleLeuTyrValGlySerGlnIleAspLeuPheCysGlnAsn<-><-><-> : 206 ||||||:!!||||||.!!||||||||||||!!.||||||||| ++IleLeuHisValGlyGlyGlnIleAspLeuLeuCysGlnAsnMetArgAsp 1386715 : ...agATATTACATGTTGGTGGTCAGATCGATTTATTGTGTCAAAACATGAGAGAC : 1387159 207 : LeuThrPheHisSerTyrLysLysArgGluSerGlnAspThrIleLysAspIleIl : 224 :!!:!! !:!! ! ! |||||| ! !..!:!! ||||||||||||:!!:! IleSerArgAsnHisGluLysLysValProGlnLysLeuThrIleLysAspValVa 1387160 : ATTTCTCGTAATCATGAGAAGAAAGTACCGCAAAAACTGACAATAAAGGATGTCGT : 1387216 225 : eValArgHisGlnLysIleIleGlnLeuSerLysAsnIleGluThrIlePheThrT : 243 !||||||||||||::!||||||!:!|||||||||||||||||||||:!!||||||| lValArgHisGlnArgIleIleArgLeuSerLysAsnIleGluThrValPheThrT 1387217 : TGTTAGGCATCAACGAATTATACGACTGTCTAAAAATATCGAGACAGTTTTTACTT : 1387273 244 : yrIleSerLeuCysGlnPheValSerAsnMetLeuValIleCysPheIleSerPhe : 261 ||||||||||||||||||||:::||||||||||||||||||||||||||||||||| yrIleSerLeuCysGlnPheLeuSerAsnMetLeuValIleCysPheIleSerPhe 1387274 : ATATATCATTATgccaatttttatcgaatatgcTGGTTATCTGTTTCATAAGCTTC : 1387327 262 : ValLeuThrVal >>>> Target Intron 2 >>>> SerLeuHisThrGlu : 270 ||||||..!..! 85 bp ||||||:!!|||||| ValLeuValThr++ ++SerLeuAsnThrGlu 1387328 : GTTTTGGTAACCgt.........................agTCCTTGAACACGGAA : 1387439 271 : GlnThrIleValLeuIleMetLysCysLeuProTyrTyrIleAlaValAsnCysGl : 289 ||||||! !! !||||||:!!||||||!!!|||||||||:!!|||||||||||||| GlnThrThrGlyLeuIleLeuLysCysPheProTyrTyrValAlaValAsnCysGl 1387440 : CAGACAACTGGATTAATACTGAAATGTTTTCCCTATTACGTTGCTGTTAATTGTGA : 1387496 290 : uAlaPheIleLeuCysTyrThrGlyGluTyrIleThrSerLys >>>> Target : 304 |||||||||||||||||||||||||||||||:!!||||||||| 7 uAlaPheIleLeuCysTyrThrGlyGluTyrLeuThrSerLys++ 1387497 : AGCATTCATTTTATGTTATACCGGAGAATATCTAACCTCTAAGgt........... : 1387543 305 : Intron 3 >>>> SerGluAsnIleAsnLysAlaValTyrAsnPheLeuTrpT : 317 9 bp ||||||..!|||!..:!!:!:||||||||||||||||||| ++SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpT 1387544 : ..............agagtgAACGTATTACACAATCtgtgtacaattttctttggT : 1387659 318 : yrAsnLeuLysProArgAspValArgIleMetLeuMetIleIleLeuArgSerGln : 335 ||:!!||||||||||||!!:!.!||||||:::|||:::|||||||||||||||||| yrAspLeuLysProArgGluAlaArgIleValLeuLeuIleIleLeuArgSerGln 1387660 : ACGATCTAAAACCTCGAGAAGCTCgtattgtattattaataatattacgaTCTCAG : 1387713 336 : LysGlnLeuThrLeuThrAlaGlyLysPheIleCysLeuSerLeuGluAlaPheAl : 354 |||:!!|||! !||||||||||||||||||:!: !|||||||||! |||||||| LysGluLeuIleLeuThrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAl 1387714 : AAAGAGTTAATACTCACTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGC : 1387770 355 : aAsn >>>> Target Intron 4 >>>> MetLeuLysAlaSerAlaSerTy : 363 |||| 135 bp ||||||||||||||||||||||| aAsn++ ++MetLeuLysAlaSerAlaSerTy 1387771 : TAAtgt.........................agatgCTAAAAGCTTCAGCCTCGTA : 1387932 364 : rValSerValLeuTyrAla : 369 |||||||||||||:!!||| rValSerValLeuHisAla 1387933 : CGTATCTGTTTTGCATGCA : 1387952 vulgar: AmOr118 143 369 . KQ414716.1 1386567 1387952 + 817 M 48 144 5 0 2 I 0 395 3 0 2 M 14 42 G 0 9 M 60 180 5 0 2 I 0 81 3 0 2 M 38 114 5 0 2 I 0 75 3 0 2 M 52 156 5 0 2 I 0 131 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1386568 1387952 817 + . gene_id 1 ; sequence AmOr118 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1386568 1386711 . + . KQ414716.1 exonerate:protein2genome:local exon 1386568 1386711 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1386712 1386713 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1386712 1387110 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387109 1387110 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387111 1387341 . + . KQ414716.1 exonerate:protein2genome:local exon 1387111 1387341 . + . insertions 9 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387342 1387343 . + . intron_id 2 ; splice_site "Gt" KQ414716.1 exonerate:protein2genome:local intron 1387342 1387426 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1387425 1387426 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387427 1387540 . + . KQ414716.1 exonerate:protein2genome:local exon 1387427 1387540 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387541 1387542 . + . intron_id 3 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387541 1387619 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1387618 1387619 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 4 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 4 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 3 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387952 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387952 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1386568 1387952 817 + . alignment_id 1 ; Query AmOr118 ; Align 1386568 144 144 ; Align 1387111 192 42 ; Align 1387162 206 180 ; Align 1387427 266 114 ; Align 1387620 304 156 ; Align 1387911 356 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr118 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 519 Query range: 0 -> 144 Target range: 1385634 -> 1386549 1 : MetIleAsnArgProLeuGluTyrSerLeuArgIlePheGlyIleTrpProAspSe : 19 !!:||||||||||||||||||||||||||||||:!!|||||| !||||||||||| IleIleAsnArgProLeuGluTyrSerLeuArgLeuPheGlyAlaTrpProAspSe 1385635 : ATAATTAATCGTCCATTGGAATATAGCCTCCGTCTATTTGGCGCCTGGCCAGATTC : 1385689 20 : rProTyrProLysLeuLysIleIleThrTrpIleIleIleLeuProThrPheLeuV : 38 | !!||| !! ||||||! !|||! !||| ! |||:!! !!|||||||||: rSerTyrSerPheLeuLysSerIleIleTrpSerThrIleMetAlaThrPheLeuM 1385690 : TTCCTATTCATTTCTGAAAAGTATTATTTGGTCGACGATAATGGCAAcgtttttaa : 1385746 39 : alPheGlnTyrTrpTyrCysIleThrHisIleLysLeuGlyLeuIleAspLeuLeu : 56 ::||||||||||||||||||||||||||||||!:!! !|||||||||||||||||| etPheGlnTyrTrpTyrCysIleThrHisIleArgSerGlyLeuIleAspLeuLeu 1385747 : tgtttcaataTTGGTATTGTATTACTCATATTAGATCAggtttaattgatttattg : 1385800 57 : AspGlyLeuSerLeuThrLeuSerAsnThrLeuValPheIleLysLeuIleValIl : 75 ||||||||||||:!!||||||||||||:!!|||||||||:!!|||||||||:!!|| AspGlyLeuSerIleThrLeuSerAsnSerLeuValPheLeuLysLeuIleIleIl 1385801 : GACGGATTGAGTATTACTTTATCAAATTCACTCGTCTTTCTCAAATTGATTATTAT : 1385857 76 : eTrpPheHisLys{Ar} >>>> Target Intron 1 >>>> {g}ThrPheT : 83 ||||.!!|||!..{||} 486 bp {|}||||||| eTrpLeuHisSer{Ar}++ ++{g}ThrPheT 1385858 : TTGGCTTCATAGT{CG}gt.........................ag{A}ACATTTT : 1386367 84 : yrGluIleLeuMetSerMetLysGluAspLeuAsnAsnAsnLysHisSerAlaThr : 101 ||! ||||||! !!!:!: ||||||! !|||||| !! |||...... yrGlyIleLeuThrThrValPheGluAspCysAsnAsnTyrAla---SerThrVal 1386368 : ATGGCATTCTGACAACCGTATTCGAGGACTGCAATAATTATGCT---TCTAccgtt : 1386418 102 : GluAsnLysArgIleIleMetAspLysSerMetLeuSerSerArgIleSerAsnPh : 120 |||||||||||||||:::! ||||||:!!|||||||||||||||||||||||||| GluAsnLysArgIleMetThrAspLysAlaMetLeuSerSerArgIleSerAsnPh 1386419 : gaaaataaacgaataatgACAGATAAAGCTATGTTGTCTTCTCGtatctcaaattt : 1386475 121 : eLeuIleSerTyrPheAlaIleThrPhePheLeuTyrSerGlyValAlaLeuValI : 139 |||||||...||||||:!!|||||||||.!!:!!|||||||||:!!|||||||||: eLeuIleGlyTyrPheSerIleThrPheLeuValTyrSerGlyLeuAlaLeuValL 1386476 : tttaattggctATTTTTCGATCACGTTCCTTGTATATTCAGGACTTGCTCTAGTAT : 1386532 140 : lePheAspGluAspGln : 144 !!||||||||||||||| euPheAspGluAspGln 1386533 : TATTTGATGAAGATCAG : 1386549 vulgar: AmOr118 0 144 . KQ414716.1 1385634 1386549 + 519 M 79 237 S 0 2 5 0 2 I 0 482 3 0 2 S 1 1 M 17 51 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1385635 1386549 519 + . gene_id 2 ; sequence AmOr118 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1385635 1385873 . + . KQ414716.1 exonerate:protein2genome:local exon 1385635 1385873 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1385874 1385875 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1385874 1386359 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1386358 1386359 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1386360 1386549 . + . KQ414716.1 exonerate:protein2genome:local exon 1386360 1386549 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local similarity 1385635 1386549 519 + . alignment_id 2 ; Query AmOr118 ; Align 1385635 1 237 ; Align 1386361 81 51 ; Align 1386412 99 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr118 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 286 -> 369 Target range: 1408998 -> 1409525 287 : AsnCysGluAlaPheIleLeuCysTyrThrGlyGluTyrIleThrSerLysSerGl : 305 |||||| ||| :!! ! ! ! !.!. !||| !! !:::|||:: AsnCysThrTyrPhe***IleHisArgCys***AsnIleIleAspPheGlnSerLy 1408999 : aattgtacatatttttgaATACATCGTTGTTAAAATATCATTGATTTTcagagtaa : 1409053 306 : uAsnIleAsnLysAlaValTyrAsnPheLeuTrpTyrAsnLeuLysProArgAspV : 324 : |||... ! .!!!.!|||.!.|||||||||||||||:!! ! !!!:!!!: sLeuIleGlyAspThrAlaTyrGluPheLeuTrpTyrAsnMetHisSerLysGluS 1409054 : actgattggagACACGGCGTATGAATTTCTTTGGTATAATATGCATTCGAAGGAAA : 1409110 325 : alArgIleMetLeuMetIleIleLeuArgSerGlnLysGlnLeuThrLeuThrAla : 342 !|||:!!||||||:!::!!|||||||||||||||||| !!!!|||...||| erArgLeuMetLeuLeuValIleLeuArgSerGlnLysGlyPheThrPheThrPhe 1409111 : GCCGACTTATGTTGCTTGTAATACTACGATCACAGAAAGGATTTACtttcactttt : 1409164 343 : GlyLysPheIleCysLeuSerLeuGluAlaPheAlaAsn >>>> Target Int : 356 ||||||||| ||||||:!!|||::!||||||..! 278 b GlyLysPheAlaSerLeuSerMetGluSerPheAlaGly++ 1409165 : ggaaaatttgcaagtCTTTCCATGGAAAGTTTTGCAGGCgt............... : 1409208 357 : ron 1 >>>> MetLeuLysAlaSerAlaSerTyrValSerValLeuTyrAla : 369 p ::::!!||||||||||||||||||:!!||||||||| !||| ++IleMetLysAlaSerAlaSerTyrIleSerValLeuLeuAla 1409209 : ..........agattATGAAAGCTTCTGCATCGTATATATCCGTATTGCTCGCA : 1409525 vulgar: AmOr118 286 369 . KQ414716.1 1408998 1409525 + 183 M 69 207 5 0 2 I 0 274 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408999 1409525 183 + . gene_id 3 ; sequence AmOr118 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408999 1409205 . + . KQ414716.1 exonerate:protein2genome:local exon 1408999 1409205 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1409206 1409207 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1409206 1409483 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1409482 1409483 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409484 1409525 . + . KQ414716.1 exonerate:protein2genome:local exon 1409484 1409525 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408999 1409525 183 + . alignment_id 3 ; Query AmOr118 ; Align 1408999 287 207 ; Align 1409484 356 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr118 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 1 -> 76 Target range: 1390541 -> 1390769 2 : IleAsnArgProLeuGluTyrSerLeuArgIlePheGlyIleTrpProAspSerPr : 20 |||!:!||||||:!!||| !.!!||||||:!! !||||||||||||! !||| ! IleSerArgProValGluIleGlyLeuArgLeuThrGlyIleTrpProGlySerSe 1390542 : ATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGGAATTTGGCCAGGTTCATC : 1390596 21 : oTyrProLysLeuLysIleIleThrTrpIleIleIleLeuProThrPheLeuValP : 39 !||| !! :!! !:!!||||||||||||:!!:!! !!..! ! ! !:!!| rTyrGluIleIleValArgValThrTrpIleIleLeuMetThrValValGlnIleP 1390597 : TTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTATGACAGTTGTACAAATAT : 1390653 40 : heGlnTyrTrpTyrCysIleThrHisIleLys<->LeuGlyLeuIleAspLeuLeu : 56 |||||||| ! ||| |||! !|||:!! ! !..!||| :!!|||:!! heGlnTyrArgTyrIleIleLysHisLeuAspGlySerAsnLeuAlaAsnLeuIle 1390654 : TCCAATATCGATATATAATAAAGCATCTCGATGGTAGTAATCTGGCGAACTTAATA : 1390707 57 : AspGlyLeuSerLeuThrLeuSerAsnThrLeuValPheIleLysLeuIleValIl : 75 |||.!!:!!.!! !|||||| !! !!!:!|||:!!!:!:::|||||||||:::.. AspSerValGlyThrThrLeuProTyrSerLeuLeuTyrValLysLeuIleIlePh 1390708 : GACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTATgtcaaattaattatttt : 1390764 76 : eTrp : 76 .||| eTrp 1390765 : ctgg : 1390769 vulgar: AmOr118 1 76 . KQ414716.1 1390541 1390769 + 165 M 48 144 G 0 3 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390542 1390769 165 + . gene_id 4 ; sequence AmOr118 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1390542 1390769 . + . KQ414716.1 exonerate:protein2genome:local exon 1390542 1390769 . + . insertions 3 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390542 1390769 165 + . alignment_id 4 ; Query AmOr118 ; Align 1390542 2 144 ; Align 1390689 50 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr118 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 303 -> 371 Target range: 1402435 -> 1402808 304 : SerGluAsnIleAsnLysAlaValTyrAsnPheLeuTrpTyrAsnLeuLysProAr : 322 |||:!! |||..!!!..!!!.!|||.!.||||||||||||:!!|||::: !!! SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerTh 1402436 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAAC : 1402490 323 : gAspValArgIleMetLeuMetIleIleLeuArgSerGlnLysGlnLeuThrLeuT : 341 !!!: !!:!:!!:!::!! :!!|||||||||||||||||| !!!|||!..| rGluSerGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheT 1402491 : TGAAAGCCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACGTtta : 1402547 342 : hrAlaGlyLysPheIleCysLeuSerLeuGluAlaPheAlaAsn >>>> Targe : 356 || ||||||||| ||||||||||||::!|||.!! ! hrPheGlyLysPheSerSerLeuSerLeuGluSerPheThrAla++ 1402548 : cttttggaaaattttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.......... : 1402594 357 : t Intron 1 >>>> MetLeuLysAlaSerAlaSerTyrValSerValLeuTyr : 368 169 bp !!::!!|||!.!||||||||||||:!!||||||||| ! ++IleMetLysValSerAlaSerTyrIleSerValLeuLeu 1402595 : ...............agATCATGAAAGTCTCAGCATCATATATATCAGTACTTCTT : 1402797 369 : AlaArgTyr : 371 ||| !||| AlaValTyr 1402798 : GCAGTGTAT : 1402808 vulgar: AmOr118 303 371 . KQ414716.1 1402435 1402808 + 158 M 52 156 5 0 2 I 0 165 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1402436 1402808 158 + . gene_id 5 ; sequence AmOr118 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1402436 1402591 . + . KQ414716.1 exonerate:protein2genome:local exon 1402436 1402591 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1402592 1402593 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1402592 1402760 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1402759 1402760 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402761 1402808 . + . KQ414716.1 exonerate:protein2genome:local exon 1402761 1402808 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1402436 1402808 158 + . alignment_id 5 ; Query AmOr118 ; Align 1402436 304 156 ; Align 1402761 356 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr118 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 303 -> 356 Target range: 1395323 -> 1395482 304 : SerGluAsnIleAsnLysAlaValTyrAsnPheLeuTrpTyrAsnLeuLysProAr : 322 ||| !:::|||!:!!!.|||!.!|||!:!! ! !|||||| !||| ! |||!: SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 323 : gAspValArgIleMetLeuMetIleIleLeuArgSerGlnLysGlnLeuThrLeuT : 341 !||| !!.!|||!!::!!:!::!!!!::!!|||||||||!:!!:!||||||:!!| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 342 : hrAlaGlyLysPheIleCysLeuSerLeuGluAlaPheAlaAsnMet : 356 ||||||||||||||!!: !||||||||||||!.!|||||||||:!: hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnVal 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTA : 1395482 vulgar: AmOr118 303 356 . KQ414716.1 1395323 1395482 + 143 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395482 143 + . gene_id 6 ; sequence AmOr118 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395482 143 + . alignment_id 6 ; Query AmOr118 ; Align 1395324 304 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr118 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 191 -> 265 Target range: 1401021 -> 1401234 192 : IleLeuTyrValGlySerGlnIleAspLeuPheCysGlnAsnLeuThrPheHisSe : 210 :!!|||:!!:!!|||!!!|||||||||:!!.!.|||!:!|||||| ! ! !|| ValLeuHisLeuGlyCysGlnIleAspIleMetCysArgAsnLeuLeuAspValSe 1401022 : GTACTTCATCTAGGATGTCAAATCGACATCATGTGCCGAAATTTGCTAGACGTTTC : 1401076 211 : rTyrLysLysArgGluSerGlnAspThrIleLysAspIleIleValArgHisGlnL : 229 |!:!||| ! :::... |||||| ...||| !|||||||||: rPheLysAspGlyLysGln---------IleLysPhePheIleAsnArgHisGlnG 1401077 : CTTCAAAGACggaaaacaa---------ataaaattcttcattaACAGACATCAGG : 1401124 230 : ysIleIleGlnLeuSerLysAsnIleGluThrIlePheThrTyrIleSerLeuCys : 247 !!|||||| !!!:!!:!!!..||||||! !:!!|||||||||!!::!!||| !! luIleIleValPheAlaGluArgIleGluLysLeuPheThrTyrMetAlaLeuSer 1401125 : AAATTATTGTTTTTGCAGAAAGAATTGAGAAACTTTTTACATACATGGCTCTCAGT : 1401178 248 : GlnPheValSerAsnMetLeuValIleCysPheIleSerPheValLeuThrVal : 265 |||.!!|||||||||! !:!!:!!||||||! !:!!.!!|||:!!:!!..!:!! GlnLeuValSerAsnThrIleIleIleCysCysValGlyPheLeuValValIle 1401179 : CAACTTGTGTCCAATACGATAATTATATGTTGCGTAGGATTTCTCGTTGTAATT : 1401234 vulgar: AmOr118 191 265 . KQ414716.1 1401021 1401234 + 136 M 25 75 G 3 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401022 1401234 136 + . gene_id 7 ; sequence AmOr118 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1401022 1401234 . + . KQ414716.1 exonerate:protein2genome:local exon 1401022 1401234 . + . insertions 0 ; deletions 3 KQ414716.1 exonerate:protein2genome:local similarity 1401022 1401234 136 + . alignment_id 7 ; Query AmOr118 ; Align 1401022 192 75 ; Align 1401097 220 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr118 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 191 -> 263 Target range: 1408216 -> 1408423 192 : IleLeuTyrValGlySerGlnIleAspLeuPheCysGlnAsnLeuThrPheHisSe : 210 :!:|||:!!:!!|||!!!|||||||||:!!.!.||||||!..|||! ! ! ! ValLeuHisLeuGlyCysGlnIleAspIleMetCysGlnThrLeuLysGluValPr 1408217 : GTGCTTCATCTAGGTTGTCAAATCGATATTATGTGCCAGACATTAAAGGAGGTTCC : 1408271 211 : rTyrLysLysArgGluSerGlnAspThrIleLysAspIleIleValArgHisGlnL : 229 !||||||!!.!:! ..! :!:!:! !.!!||| !|||||||||: oTyrLysAsnLysThrGln---------LeuArgPhePheIleSerArgHisGlnG 1408272 : TTATAAGAATAAAACTCAA---------CTGAGATTCTTCATCAGCAGACATCAAC : 1408319 230 : ysIleIleGlnLeuSerLysAsnIleGluThrIlePheThrTyrIleSerLeuCys : 247 !!|||||| !!!!:!!:!!!..||||||! !:!:|||||||||:!!:!!||| !! lnIleIleIlePheAlaGluArgIleGluLysLeuPheThrTyrLeuAlaLeuSer 1408320 : AGATCATCATATTTGCAGAGAGAATAGAAAAACTGTTTACGTATCTAGCACTTAGT : 1408373 248 : GlnPheValSerAsnMetLeuValIleCysPheIleSerPheValLeu : 263 |||.!!:!!||||||! |||:!!! !|||! !:!:.!!!:!:!!:!! GlnLeuLeuSerAsnThrLeuIleThrCysCysValGlyTyrIleIle 1408374 : CAACTTCTCTCGAATACCCTAATTACTTGCTGCGTGGGTTATATTATC : 1408423 vulgar: AmOr118 191 263 . KQ414716.1 1408216 1408423 + 123 M 25 75 G 3 0 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408217 1408423 123 + . gene_id 8 ; sequence AmOr118 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1408217 1408423 . + . KQ414716.1 exonerate:protein2genome:local exon 1408217 1408423 . + . insertions 0 ; deletions 3 KQ414716.1 exonerate:protein2genome:local similarity 1408217 1408423 123 + . alignment_id 8 ; Query AmOr118 ; Align 1408217 192 75 ; Align 1408292 220 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr114 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 328 -> 395 Target range: 1395323 -> 1395911 329 : SerMetGluIleValAsnAlaAlaTyrAsnThrGluTrpTyrThrLeuProThrAs : 347 |||:!:..!||| !||||||||||||!:!:!! |||||| !||| ! !!.! SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 348 : nIleThrLysMetLeuIleIleValMetCysArgAlaLysSerProLeuThrValT : 366 . !! ! ! !!::!!|||:!!:!!||| |||:!!:!!!!!! !||||||:!!| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 367 : hrAlaGlyArgPheCysSerPheThrLeuGlnLeuPheSerGlu >>>> Targe : 381 ||||||||!:!||| ..!!!.:!!|||:!! !|||:!!.!. hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsn++ 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATgt.......... : 1395482 382 : t Intron 1 >>>> ValLeuLysThrSerMetArgTyrLeuSerValLeuTyr : 393 387 bp :::||||||.!!||| !|||:!!|||||||||||| ++IleLeuLysAlaSerAlaSerTyrIleSerValLeuTyr 1395483 : ...............agatcTTAAAGGCTTCTGCATCGTACATATCTGTACTGTAT : 1395903 394 : AlaVal : 395 |||:!! AlaMet 1395904 : GCGATG : 1395911 vulgar: AmOr114 328 395 . KQ414716.1 1395323 1395911 + 138 M 52 156 5 0 2 I 0 383 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395911 138 + . gene_id 1 ; sequence AmOr114 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1395324 1395479 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395479 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1395480 1395481 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1395480 1395866 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1395865 1395866 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1395867 1395911 . + . KQ414716.1 exonerate:protein2genome:local exon 1395867 1395911 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395911 138 + . alignment_id 1 ; Query AmOr114 ; Align 1395324 329 156 ; Align 1395867 381 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr120 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 332 -> 394 Target range: 1395323 -> 1395506 333 : SerPheAsnIleSerIleAlaAlaTyrSerMetGlnTrpTyrGlnLeuProThrPh : 351 |||.!.:::||||||! !|||||||||||| ! ||||||! ||| ! !! SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 352 : eIleLysAspGluIleCysMetIleIleLeuArgSerGlnArgProSerPheIleT : 370 !!:! !! ||| !:!::!!!!::!!||||||||||||! !! ! |||| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 371 : hrAlaGlyLysLeuTyrIleMetHisLeuGluAsnPheThrAlaIleLeuSerThr : 388 |||||||||||!!! !:!! !||||||..!||| |||! !:!!||| ! hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPhe---AlaAsnValSerLeu 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTT---GCAAATGTAAGTCTA : 1395486 389 : AlaPheSerTyrPheMet : 394 !||||||||| !!||| LeuPheSerTyrValMet 1395487 : CTTTTTTCTTATGTTATG : 1395506 vulgar: AmOr120 332 394 . KQ414716.1 1395323 1395506 + 103 M 50 150 G 1 0 M 11 33 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395506 103 + . gene_id 1 ; sequence AmOr120 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395506 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395506 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395506 103 + . alignment_id 1 ; Query AmOr120 ; Align 1395324 333 150 ; Align 1395474 384 33 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 154 -> 216 Target range: 887588 -> 887774 155 : AsnValSerArgSerArgGluPheIleTyrProThrTyrTyrPheValAspGluGlnL : 174 ||| !!!!..! !!|||:!! !:!!||||||..! ! ||| !:!!|||...:::| AsnArgThrGluProArgGlnThrLeuTyrProValGluTyrHisIleAspSerGluL 887589 : AACCGGACCGAACCCAGACAGACTCTATACCCAGTGGAGTACCACATCgacagtgaaa : 887646 175 : ysTyrTyrTyrProIleLeuThrHisMetIleAlaValIleLeuValLeuSerSerVa : 193 |||||:::||| ||| !.!!||| !||| !! !:!!:!!||| ! ! ysTyrPheTyrLeuIleThrAlaHisCysTyrAlaSerThrValLeuLeuLeuLeuGl 887647 : aatatttttacctgATTACAGCTCATTGTTACGCCTCGACAGTACTTCTTCTGCTTCA : 887703 194 : lTyrLeuAlaCysAspThrAsnLeuValGlnIleValHisHisGlyCysAlaLeuLeu : 212 ! !:!!!.! !||||||! ! !:!! :!:|||!!.|||||||||||||||!!! nThrValValHisAspThrMetTyrIleValLeuValGlnHisGlyCysAlaLeuPhe 887704 : AACTGTCGTACACGACACAATGTACATTGTTCTGGTCCAACATGGCTGCGCTTTATTC : 887760 213 : AlaIleSerGly : 216 |||:!!!!!||| AlaValThrGly 887761 : GCAGTTACGGGG : 887774 vulgar: AmOr109 154 216 . KQ414735.1 887588 887774 + 124 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 887589 887774 124 + . gene_id 1 ; sequence AmOr109 ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 887589 887774 . + . KQ414735.1 exonerate:protein2genome:local exon 887589 887774 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 887589 887774 124 + . alignment_id 1 ; Query AmOr109 ; Align 887589 155 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 109 -> 216 Target range: 887456 -> 887774 110 : LeuGluIleLeuAsnMetTyrSerArgArgAlaThrThrLeuCysIlePheTyrGluV : 129 |||...|||||||||!!: !!! !!:!! ! !! ! !||| ! !|||! ! !| LeuAsnIleLeuAsnIleAsnPheGlnIleIleLysPheLeuLeuHisPheSerIleV 887457 : ttaaacattttgaaCATTAACTTTCAAATTATCAAGTTTCTTCTTCACTTCTCTATAG : 887514 130 : alIleValIlePheSerAlaIleMetPheIleMetIleProThrIleProProIleLe : 148 || !||| !.!.||||||! !|||!:!.!!! :!! :!!||| !! !:!!:! alTyrValCysIleSerAlaThrMetTyrPheThrLeu---SerIleAlaValValIl 887515 : TTTACGTCTGCATATCGGCGACAATGTATTTCACACTT---TCGATTGCCGTGGTCAT : 887568 149 : uAsnIleIleMetProLeuAsnGluSerArgAspArgGluPheIleTyrProThrTyr : 167 ! ! !:!! ! !|||..!!!!..! !|||:!! !:!!||||||..! ! ePheGluGluLeuAsnLysAsnArgThrGluProArgGlnThrLeuTyrProValGlu 887569 : CTTCGAGGAATTGAATAAAAACCGGACCGAACCCAGACAGACTCTATACCCAGTGGAG : 887625 168 : PhePheIleAspGluGluLysTyrTyrTyrProIleLeuThrTyrMetAlaThrValI : 187 !:! !||||||...|||||||||:::||| ||| !.!!:!! !.!! !! TyrHisIleAspSerGluLysTyrPheTyrLeuIleThrAlaHisCysTyrAlaSerT 887626 : TACCACATCgacagtgaaaaatatttttacctgATTACAGCTCATTGTTACGCCTCGA : 887685 188 : leLeuIleValSerSerValTyrLeuAlaCysAspThrAsnLeuValGlnIleValHi : 206 !:!!:!!:!! ! ! ! !:!!!.! !||||||! ! !:!! :!:|||!! hrValLeuLeuLeuLeuGlnThrValValHisAspThrMetTyrIleValLeuValGl 887686 : CAGTACTTCTTCTGCTTCAAACTGTCGTACACGACACAATGTACATTGTTCTGGTCCA : 887742 207 : sHisGlyCysAlaLeuLeuAlaIleSerGly : 216 .|||||||||||||||!!!|||:!!!!!||| nHisGlyCysAlaLeuPheAlaValThrGly 887743 : ACATGGCTGCGCTTTATTCGCAGTTACGGGG : 887774 vulgar: AmOr108 109 216 . KQ414735.1 887456 887774 + 124 M 32 96 G 1 0 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 887457 887774 124 + . gene_id 1 ; sequence AmOr108 ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 887457 887774 . + . KQ414735.1 exonerate:protein2genome:local exon 887457 887774 . + . insertions 0 ; deletions 1 KQ414735.1 exonerate:protein2genome:local similarity 887457 887774 124 + . alignment_id 1 ; Query AmOr108 ; Align 887457 110 96 ; Align 887553 143 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 110 -> 286 Target range: 887459 -> 888081 111 : GluIlePheGluIleTyrPheLysArgAlaMetPhePheCysSerPheTyrGluValS : 130 ...|||......||| !!|||:!!! ! !! !|||.!! ! !|||! ! !|||! AsnIleLeuAsnIleAsnPheGlnIleIleLysPheLeuLeuHisPheSerIleValT 887460 : aacattttgaaCATTAACTTTCAAATTATCAAGTTTCTTCTTCACTTCTCTATAGTTT : 887517 131 : erIleTyrSerCysGlyPheMetPheLeuSerMetProSerIleProLeuIleMetAs : 149 !:!!! !! !! !.! |||!:!!!!!!!:!: |||||| !!:!!:!!!!: yrValCysIleSerAlaThrMetTyrPheThrLeu---SerIleAlaValValIlePh 887518 : ACGTCTGCATATCGGCGACAATGTATTTCACACTT---TCGATTGCCGTGGTCATCTT : 887571 150 : nValIleMetProLeuAsnGluSerArgSerArgGluLeuValTyrProSerTyrTyr : 168 !! ! !:!! ! !|||..!!!!..! !!|||:!! !:!!|||||| ! ! ||| eGluGluLeuAsnLysAsnArgThrGluProArgGlnThrLeuTyrProValGluTyr 887572 : CGAGGAATTGAATAAAAACCGGACCGAACCCAGACAGACTCTATACCCAGTGGAGTAC : 887628 169 : PheValAspGluGlnLysTyrTyrTyrLeuIleThrGlyHisMetLeuAlaValCysL : 188 !:!!|||...:::||||||:::||||||||||||!.!||| ! !||| ! : HisIleAspSerGluLysTyrPheTyrLeuIleThrAlaHisCysTyrAlaSerThrV 887629 : CACATCgacagtgaaaaatatttttacctgATTACAGCTCATTGTTACGCCTCGACAG : 887688 189 : euGlyHisValPheValTyrIleAlaCysAspIleAsnLeuIleHisValValHisHi : 207 !! !! !:!!.!! ! !:!!!.! !|||! !! ! !||| !:!!|||!!.|| alLeuLeuLeuLeuGlnThrValValHisAspThrMetTyrIleValLeuValGlnHi 887689 : TACTTCTTCTGCTTCAAACTGTCGTACACGACACAATGTACATTGTTCTGGTCCAACA : 887745 208 : sGlyCysAlaLeuLeuThrIleSerGlyTyr >>>> Target Intron 1 >>>> : 218 |||||||||||||!!!.!!:!!!!!||| ! 97 bp sGlyCysAlaLeuPheAlaValThrGlyGln++ 887746 : TGGCTGCGCTTTATTCGCAGTTACGGGGCAAgt......................... : 887780 219 : HisPheLysHisAlaMetAspAsnValAspLeuCysAsnGluLysTyrSerAspGl : 236 !!!. ! ! ! ! ||| !! !.!.! ! |||..! |||!!! .. +-GlyLeuLeuLysAspAspAspPheGluGlnTyrLysAsnArgCysTyrThrLeuSe 887781 : aaGGTTTACTAAAGGACGATGATTTTGAACAGTACAAGAACCGATGTTATACGTTGTc : 887929 237 : uLeuMetGluLysThrTyrAlaLysValSerGlnSerIleAspAlaHisLysLysAla : 255 . ...:::||| ||| ::!:!! !! .!!||| ! ! !||||||!:!||| rGluGlnLysLysIleTyrGlnArgLeuValLeuGlyIleLysGluHisLysArgAla 887930 : agaacagaagaaaatttatcagaGACTCGTTCTTGGTATCAAGGAACACAAAAGAGCT : 887986 256 : ValGluTyrValAsnLysIleAspAlaCysHisIleHisTyrPhePheIleLeuLeuG : 275 :!!|||! !.! :!!! !||| !! !.!.||| ::: :::...|||... IleGlu***AlaTrpGlnLysAspPheSerGluIleIleHisValTyrPheLeuPhe* 887987 : ATAGAGTGAGCGTGGCAAAAAGATTTCTCTGAAATTAttcatgtttattttttatttt : 888046 276 : lyMetIleIleValThrPheThrGlyThrPheIle : 286 :::|||:!: !!!:!!:!!:! !||| !!||| **IleIleLeuPheSerTyrSerTyrThrValIle 888047 : agattatTTTGTTCAGTTATAGTTACACTGTTATA : 888081 vulgar: AmOr107 110 286 . KQ414735.1 887459 888081 + 137 M 31 93 G 1 0 M 75 225 5 0 2 I 0 93 3 0 2 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 887460 888081 137 + . gene_id 1 ; sequence AmOr107 ; gene_orientation + KQ414735.1 exonerate:protein2genome:local cds 887460 887777 . + . KQ414735.1 exonerate:protein2genome:local exon 887460 887777 . + . insertions 0 ; deletions 1 KQ414735.1 exonerate:protein2genome:local splice5 887778 887779 . + . intron_id 1 ; splice_site "GT" KQ414735.1 exonerate:protein2genome:local intron 887778 887874 . + . intron_id 1 KQ414735.1 exonerate:protein2genome:local splice3 887873 887874 . + . intron_id 0 ; splice_site "AA" KQ414735.1 exonerate:protein2genome:local cds 887875 888081 . + . KQ414735.1 exonerate:protein2genome:local exon 887875 888081 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 887460 888081 137 + . alignment_id 1 ; Query AmOr107 ; Align 887460 111 93 ; Align 887553 143 225 ; Align 887875 218 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 252 Query range: 278 -> 390 Target range: 21425 -> 19369 279 : LeuAlaPheThrGlyThrPheLeuLysLeuSerThrMetGluValGlyIleArgPhe > : 298 :!!||| ..!|||||||||:!!||||||.!!!.! :::... ValAlaAlaValGlyThrPheValLysLeuGlyAsnTyrIleIleAsnGluThrLys++ 21425 : GTGGCAGCGGTTGGGACGTTCGTGAAACTGGGTAATTACattataaacgaaacgaaggt. : 21366 299 : >>> Target Intron 1 >>>> PheThrPheCysAlaTyrThrIleAlaGlnLeuI : 309 1522 bp !!..! ! ! .!!!:! !:!!!.!||| !. ++ValValHisGlyThrPhePheValGlyGlnAlaP 21365 : ........................agGTTGTGCACGGAACGTTTTTCGTCGGCCAAGCGT : 19813 310 : leHisLeuPhePheLeuThrIleMetGlyGlnPheLeuIleAsnAlaAsnGluGluThrP : 329 !!|||:!!|||||||||!.!:!!..!|||||||||:!!||||||||| !!!:||| !! heHisValPhePheLeuAsnValGlnGlyGlnPheValIleAsnAlaPheAspGluLeuT 19812 : TTCACGTTTTCTTTTTGAACGTCCAGGGACAATTTGTGATAAACGCATTCGACGAACTGT : 19753 330 : heLysThr{Il} >>>> Target Intron 2 >>>> {e}TyrGluAlaAspTrpT : 338 :! ! ! !{||} 113 bp {|}||||||:!!.!.|||| yrAspLys{Il}++ ++{e}TyrGluSerGlnTrpT 19752 : ACGACAAG{AT}gt.........................ag{A}TACGAATCGCAGTGGT : 19613 339 : yrAsnGlySerSerLysMetGlnSerLeuTyrValLeuValLeuArgLysCysLeuSerP : 358 ||||| !!!! !!!:!! |||:!!||||||||||||!.!||||||!..||||||!:!| yrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeuArgSerCysLeuAsnP 19612 : ATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTGAGAAGCTGCCTAAACC : 19553 359 : roProLysLeuThrGlyGlyGlyPheValAlaLeuAsnLeuAspSerPheValGln >> : 377 ||||| !||||||!.!||||||.!...!.!!||||||||| ||||||!.!:!! roProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSerPheAlaGlu++ 19552 : CACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATCGTTCGCAGAGgt.. : 19494 378 : >> Target Intron 3 >>>> IleLeuLysAlaSerPheSerTyrTyrThrValPh : 388 85 bp |||:!!||||||||| !!|||||||||||||||.! ++IleIleLysAlaSerValSerTyrTyrThrValMe 19493 : .......................agATCATCAAAGCATCTGTTTCCTACTACACGGTGAT : 19378 389 : eArgSer : 390 .!:!!!! tGlnThr 19377 : GCAGACC : 19370 vulgar: AmOr109 278 390 . KQ414772.1 21425 19369 - 252 M 19 57 5 0 2 I 0 1518 3 0 2 M 34 102 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 44 132 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 19370 21425 252 - . gene_id 1 ; sequence AmOr109 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 21369 21425 . - . KQ414772.1 exonerate:protein2genome:local exon 21369 21425 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 21367 21368 . - . intron_id 1 ; splice_site "gt" KQ414772.1 exonerate:protein2genome:local intron 19847 21368 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 19847 19848 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 19743 19846 . - . KQ414772.1 exonerate:protein2genome:local exon 19743 19846 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 19741 19742 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 19630 19742 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 19630 19631 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 19497 19629 . - . KQ414772.1 exonerate:protein2genome:local exon 19497 19629 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 19495 19496 . - . intron_id 3 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 19412 19496 . - . intron_id 3 KQ414772.1 exonerate:protein2genome:local splice3 19412 19413 . - . intron_id 2 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 19370 19411 . - . KQ414772.1 exonerate:protein2genome:local exon 19370 19411 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 19370 21425 252 - . alignment_id 1 ; Query AmOr109 ; Align 21426 279 57 ; Align 19847 298 102 ; Align 19629 333 132 ; Align 19412 377 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 242 Query range: 133 -> 216 Target range: 14142 -> 13893 134 : CysAlaPheMetPheLeuValIleProThrIleProProIleLeuAsnIleValAlaPro : 153 |||!.!.!!:!!|||:!!..!! |||..!! !|||! !||||||:!!|||:!! !||| CysValIleLeuPheValThrThrProValThrProHisIleLeuAspIleLeuLeuPro 14142 : TGTGTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATTTTGGACATTTTACTACCG : 14085 154 : LeuAsnValSerArgSerArgGluPheIleTyrProThrTyrTyrPheValAspGluGln : 173 !|||! !||||||..! !! !!:!|||||||||.!!|||||||||..!||||||!!. LysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHis 14084 : AAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCAT : 14025 174 : LysTyrTyrTyrProIleLeuThrHisMetIleAlaValIleLeuValLeuSerSerVal : 193 |||||| !! !|||:!!||||||||| :!!||||||||||||:!!! !! !||| LysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrVal 14024 : AAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTG : 13965 194 : TyrLeuAlaCysAspThrAsnLeuValGlnIleValHisHisGlyCysAlaLeuLeuAla : 213 |||:!!||||||||||||!:!! !:!! ! :!!|||!!.|||||||||!.!||||||||| TyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAla 13964 : TACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCC : 13905 214 : IleSerGly : 216 :!:|||||| ValSerGly 13904 : GTGTCCGGg : 13894 vulgar: AmOr109 133 216 . KQ414772.1 14142 13893 - 242 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13894 14142 242 - . gene_id 2 ; sequence AmOr109 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13894 14142 . - . KQ414772.1 exonerate:protein2genome:local exon 13894 14142 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13894 14142 242 - . alignment_id 2 ; Query AmOr109 ; Align 14143 134 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 210 Query range: 117 -> 247 Target range: 18099 -> 17709 118 : ArgArgThrThrAlaLeuCysAlaLeuTyrLysValMetValTyrSerCysAlaPheMet : 137 :::::: !.!!.!!||| ! !:!!!:! !|||! !.!|||! !|||:!!|||:!! LysGlnLeuAlaThrLeuAspArgIlePheProValAsnAlaTyrIleCysSerPheLeu 18099 : aaacaattAGCAACTCTCGATCGGATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTG : 18042 138 : PheLeuValIleProThrIleProProIleLeuAsnIleValAlaProLeuAsnValSer : 157 |||:!! !:!:||| ! !!! !:!::!!||| ! ! !!! !|||:!!!!! PheIleGlnValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIleThr 18041 : TTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACG : 17982 158 : ArgSerArgGluPheIleTyrProThrTyrTyrPheValAspGluGlnLysTyrTyrTyr : 177 ! !||| !:!!|||:!! ||| !|||||||||||||||||| !:!!||||||||| ProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyrTyr 17981 : CCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTAT : 17922 178 : ProIleLeuThrHisMetIleAlaValIleLeuValLeuSerSerValTyrLeuAlaCys : 197 !|||:!! !||| ! ..!..!||||||:!!:!! ! !||||||! !|||||| TyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCys 17921 : TACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 17862 198 : AspThrAsnLeuValGlnIleValHisHisGlyCysAlaLeuLeuAlaIleSerGlyTyr : 217 ||||||!:!! !:!! !:!:|||!!.||| !|||!.!|||!!!|||:!::!!|||! AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly*** 17861 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGGTGA : 17802 218 : HisPheLysHisAlaValAspAspValLysPheCysAspGlyTyrTyrIleAspAlaSer : 237 .!. ! !... ... :::...||| ...||| !!||| ! ! !!!! GluAsnLeuArgAspThrPhePheLeuSerPheSerSerGlyAsnTyrTyr***AspCys 17801 : GAAAACTTGAGagatacattttttctctcattttcgtCGGGAAACTATTATTGAGATTGC : 17742 238 : MetAspGluThrTyrValLysIleArgGln : 247 :!!!!:...:!! ! :!! !:!!!:!:!! ValGluArgSerGlnIleProLeuGlnGlu 17741 : GTGGAACGTTCGCAGATACCGCTTCAAGAA : 17710 vulgar: AmOr109 117 247 . KQ414772.1 18099 17709 - 210 M 130 390 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17710 18099 210 - . gene_id 3 ; sequence AmOr109 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17710 18099 . - . KQ414772.1 exonerate:protein2genome:local exon 17710 18099 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17710 18099 210 - . alignment_id 3 ; Query AmOr109 ; Align 18100 118 390 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 149 Query range: 325 -> 377 Target range: 37064 -> 36908 326 : GluGluThrPheLysThrIleTyrGluAlaAspTrpTyrAsnGlySerSerLysMetGln : 345 :!!||| !||| !! !|||...||| ! |||||||||.!!||| !!!:!! !||| GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 37064 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 37007 346 : SerLeuTyrValLeuValLeuArgLysCysLeuSerProProLysLeuThrGlyGlyGly : 365 !!!||||||||||||!.!||||||!:! !!|||!!!|||||| !||||||!.!|||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 37006 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 36947 366 : PheValAlaLeuAsnLeuAspSerPheValGlnIle : 377 .!.:!!:!!|||||||||!!:!!!|||!.!:::::: LeuIleSerLeuAsnLeuGluThrPheAlaGluVal 36946 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGaggta : 36909 vulgar: AmOr109 325 377 . KQ414772.1 37064 36908 - 149 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 36909 37064 149 - . gene_id 4 ; sequence AmOr109 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 36909 37064 . - . KQ414772.1 exonerate:protein2genome:local exon 36909 37064 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 36909 37064 149 - . alignment_id 4 ; Query AmOr109 ; Align 37065 326 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 149 Query range: 325 -> 377 Target range: 35630 -> 35474 326 : GluGluThrPheLysThrIleTyrGluAlaAspTrpTyrAsnGlySerSerLysMetGln : 345 :!!||| !||| !! !|||...||| ! |||||||||.!!||| !!!:!! !||| GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 35630 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 35573 346 : SerLeuTyrValLeuValLeuArgLysCysLeuSerProProLysLeuThrGlyGlyGly : 365 !!!||||||||||||!.!||||||!:! !!|||!!!|||||| !||||||!.!|||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 35572 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 35513 366 : PheValAlaLeuAsnLeuAspSerPheValGlnIle : 377 .!.:!!:!!|||||||||!!:!!!|||!.!:!!:!! LeuIleSerLeuAsnLeuGluThrPheAlaGluVal 35512 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGAGGTA : 35475 vulgar: AmOr109 325 377 . KQ414772.1 35630 35474 - 149 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 35475 35630 149 - . gene_id 5 ; sequence AmOr109 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 35475 35630 . - . KQ414772.1 exonerate:protein2genome:local exon 35475 35630 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 35475 35630 149 - . alignment_id 5 ; Query AmOr109 ; Align 35631 326 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 140 Query range: 332 -> 381 Target range: 12643 -> 12496 333 : TyrGluAlaAspTrpTyrAsnGlySerSerLysMetGlnSerLeuTyrValLeuValLeu : 352 |||...||| |||||||||.!!..!!.!!:!! !|||||||||!:!||||||!.!||| TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeu 12643 : TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGTTA : 12586 353 : ArgLysCysLeuSerProProLysLeuThrGlyGlyGlyPheValAlaLeuAsnLeuAsp : 372 |||!!.||||||||| !!|||:!!:!!|||!.!||||||.!.:!!.!!:!!||||||.!. ArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGln 12585 : AGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAA : 12526 373 : SerPheValGlnIleLeuLysAlaSer : 381 |||||| !:!!:!! !!..:!!||| SerPheSerGluValThrSerSerSer 12525 : AGTTTCTCAGAGGTAACAAGTTCATCG : 12497 vulgar: AmOr109 332 381 . KQ414772.1 12643 12496 - 140 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 12497 12643 140 - . gene_id 6 ; sequence AmOr109 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 12497 12643 . - . KQ414772.1 exonerate:protein2genome:local exon 12497 12643 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 12497 12643 140 - . alignment_id 6 ; Query AmOr109 ; Align 12644 333 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 332 -> 366 Target range: 23236 -> 23134 333 : TyrGluAlaAspTrpTyrAsnGlySerSerLysMetGlnSerLeuTyrValLeuValLeu : 352 |||...||| ||||||||||||!!! !!|||:!!|||:!!||||||||||||!.!||| TyrSerAlaThrTrpTyrAsnGlyThrProLysValGlnAlaLeuTyrValLeuAlaLeu 23236 : TACAGCGCTACATGGTACAACGGTACACCGAAAGTGCAAGCTTTGTACGTGCTAGCTTTG : 23179 353 : ArgLysCysLeuSerProProLysLeuThrGlyGlyGlyPhe : 366 |||!:! !|||!!!|||||| !:!!|||!.!|||! !!:! ArgArgAsnLeuThrProProLeuIleThrAlaGlyGluTyr 23178 : AGAAGGAACTTGACTCCACCGCTGATCACTGCCGGAGAATAC : 23135 vulgar: AmOr109 332 366 . KQ414772.1 23236 23134 - 110 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 23135 23236 110 - . gene_id 7 ; sequence AmOr109 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 23135 23236 . - . KQ414772.1 exonerate:protein2genome:local exon 23135 23236 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 23135 23236 110 - . alignment_id 7 ; Query AmOr109 ; Align 23237 333 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 46 -> 92 Target range: 14558 -> 14420 47 : LeuAlaThrGlnIleSerArgValIleValPheTyrSerLeuAspValLeuSerAspGln : 66 ||| ! !|||:!!:!!!:!|||:!: !|||!:!|||||||||||||||! !|||||| LeuIleLeuGlnValAlaGlnValValCysPhePheSerLeuAspValLeuIleAspGln 14558 : TTGATCTTGCAGGTAGCACAAGTGGTGTGTTTCTTCAGTTTGGACGTTCTTATAGATCAG : 14501 67 : LeuProTyrIleAsnAlaGlyIleValThrLeuPheLysGlnTyrAsnTyrIleLeuAsn : 86 ||| !!!:!.!!..!|||! !! !!.!||||||!!.|||||| |||||||||:!! !! LeuSerPhePheGlyAlaValSerAlaThrLeuLeuLysGlnGlyAsnTyrIleValTyr 14500 : CTATCATTTTTTGGCGCAGTAAGCGCGACACTGTTGAAGCAGGGGAACTACATCGTCTAT : 14441 87 : GluAspLysLeuArgGlu : 92 :!!!!::!!:!:...||| LysGluGluValAsnGlu 14440 : AAAGAGGAGGTgaatgaa : 14421 vulgar: AmOr109 46 92 . KQ414772.1 14558 14420 - 105 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 14421 14558 105 - . gene_id 8 ; sequence AmOr109 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 14421 14558 . - . KQ414772.1 exonerate:protein2genome:local exon 14421 14558 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 14421 14558 105 - . alignment_id 8 ; Query AmOr109 ; Align 14559 47 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 286 -> 326 Target range: 17319 -> 17199 287 : LysLeuSerThrMetGluValGlyIleArgPhePheThrPheCysAlaTyrThrIleAla : 306 :!!||||||||| !!!: !!! !||| !|||!:!! !!:!|||::!!:!|||:!:..! GlnLeuSerThrSerAspPheAspIleAspPheTyrArgTyrCysSerPheThrLeuCys 17319 : CAGCTGAGTACGTCGGATTTCGACATAGACTTCTACAGATATTGCAGTTTTACGTTGTGT : 17262 307 : GlnLeuIleHisLeuPhePheLeuThrIleMetGlyGlnPheLeuIleAsnAlaAsnGlu : 326 ||||||!!:||||||||| !!:!!! !:!!..!|||||||||:!!:!::!!:!! !||| GlnLeuMetHisLeuPheValIleMetLeuGlnGlyGlnPheValLeuAspSerCysGlu 17261 : CAACTGATGCACCTGTTCGTTATCATGCTTCAGGGACAGTTCGTGCTGGATTCGTGCGAG : 17202 vulgar: AmOr109 286 326 . KQ414772.1 17319 17199 - 100 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17200 17319 100 - . gene_id 9 ; sequence AmOr109 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17200 17319 . - . KQ414772.1 exonerate:protein2genome:local exon 17200 17319 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17200 17319 100 - . alignment_id 9 ; Query AmOr109 ; Align 17320 287 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 257 Query range: 128 -> 238 Target range: 14157 -> 13827 129 : ValIleValIlePheSerAlaIleMetPheIleMetIleProThrIleProProIleLeu : 148 |||! !!.!||| !!!!!!.!|||:!!|||:!:! ! |||..!! !|||! !|||||| ValAsnAlaIleValCysValIleLeuPheValThrThrProValThrProHisIleLeu 14157 : GTGAACGCGATCGTTTGTGTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATTTTG : 14100 149 : AsnIleIleMetProLeuAsnGluSerArgAspArgGluPheIleTyrProThrTyrPhe : 168 :!!|||:!!:!:||| !||||||||||||||| !! !!:!|||||||||.!!|||!:! AspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyr 14099 : GACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTAT : 14040 169 : PheIleAspGluGluLysTyrTyrTyrProIleLeuThrTyrMetAlaThrValIleLeu : 188 |||! !||||||.!.|||||| !! !|||:!!|||:!!||||||:!!||||||||| PheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeu 14039 : TTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTT : 13980 189 : IleValSerSerValTyrLeuAlaCysAspThrAsnLeuValGlnIleValHisHisGly : 208 :!:|||! !! !||||||:!!||||||||||||!:!! !:!! ! :!!|||!!.|||||| ValValPheTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGly 13979 : GTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGC : 13920 209 : CysAlaLeuLeuAlaIleSerGlyTyrHisPheLysHisAlaValAspAspMetLysPhe : 228 |||!.!|||||||||:!:|||||| ...::: ... :::... CysGlyLeuLeuAlaValSerGly***LysIleArgSerLysAsnSer***LeuAsnPro 13919 : TGCGGATTGTTGGCCGTGTCCGGgtaaaaaattcgatcgaaaaattcgtagcttaaccct : 13860 229 : SerAsnGlyAsnTyrIleAspLeuLeuMet : 238 :::..!||| ! |||||| !|||!!: PheSerAlaAsnLysIleAspThrLeuIle 13859 : ttcagtgcCAACAAAATCGATACGCTAATT : 13828 vulgar: AmOr108 128 238 . KQ414772.1 14157 13827 - 257 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13828 14157 257 - . gene_id 1 ; sequence AmOr108 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13828 14157 . - . KQ414772.1 exonerate:protein2genome:local exon 13828 14157 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13828 14157 257 - . alignment_id 1 ; Query AmOr108 ; Align 14158 129 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 253 Query range: 276 -> 381 Target range: 12873 -> 12496 277 : IleValLeuAlaPheThrGlyThrPheLeuLysLeuSerThrMetGluIleGluIleArg : 296 :!::!!:!! ! ||| !:!!!:: !:!!:!!|||!.! !||||||.!. ..! LeuIleIleLeuArgThrIleSerTrpLysGlnValSerAsnSerGluIleAsnAlaGlu 12873 : CTGATCATCCTCAGAACAATTTCTTGGAAACAGGTGTCGAACTCGGAGATTAATGCGGAG : 12816 297 : PhePheThrPheCysGlyTyrThrValAlaGlnLeuThrHisLeuPhePheLeuThrIle : 316 ||| !! ! !||| !!:!! !||| !||||||..!|||:!!.!!!:!||||||:!! PheAlaLysAspCysThrPheIleValIleGlnLeuValHisIleLeuTyrLeuThrLeu 12815 : TTTGCCAAGGATTGCACATTTATCGTGATTCAATTGGTACACATACTTTACCTAACTCTT : 12756 317 : MetGlyGlnPheLeuIleAsnAlaAsnAspGluIlePheAsnThr{Il} >>>> Targ : 332 ...|||||||||:!!|||:!!||||||!!:|||||||||.!.:!!{||} GlnGlyGlnPheValIleAspAlaAsnGluGluIlePheGluSer{Il}++ 12755 : CAAGGACAATTCGTGATCGACGCGAACGAGGAAATCTTCGAATCG{AT}gt......... : 12704 333 : et Intron 1 >>>> {e}TyrGluAlaHisTrpTyrAsnGlySerSerArgThrGln : 345 62 bp {|}|||...||| |||||||||.!!..!!.!||||||||| ++{e}TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGln 12703 : ................ag{A}TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAA : 12607 346 : SerLeuTyrValLeuValLeuArgLysCysLeuAsnProProThrLeuThrGlyGlyGly : 365 ||||||!:!||||||!.!||||||!!.||||||::! !!||| !:!!|||!.!|||||| SerLeuPheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGly 12606 : TCGTTGTTTGTATTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGA : 12547 366 : LeuIleValLeuAsnLeuAspSerPheValGlnIleLeuLysLeuSer : 381 ||||||..!:!!||||||.!.|||||| !:!!:!! !!..! !||| LeuIleThrMetAsnLeuGlnSerPheSerGluValThrSerSerSer 12546 : CTAATTACAATGAACTTGCAAAGTTTCTCAGAGGTAACAAGTTCATCG : 12497 vulgar: AmOr108 276 381 . KQ414772.1 12873 12496 - 253 M 55 165 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 12497 12873 253 - . gene_id 2 ; sequence AmOr108 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 12707 12873 . - . KQ414772.1 exonerate:protein2genome:local exon 12707 12873 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 12705 12706 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 12645 12706 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 12645 12646 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 12497 12644 . - . KQ414772.1 exonerate:protein2genome:local exon 12497 12644 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 12497 12873 253 - . alignment_id 2 ; Query AmOr108 ; Align 12874 277 165 ; Align 12644 333 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 240 Query range: 278 -> 378 Target range: 21425 -> 19490 279 : LeuAlaPheThrGlyThrPheLeuLysLeuSerThrMetGluIleGluIleArgPhe > : 298 :!!||| ..!|||||||||:!!||||||.!!!.! |||... ValAlaAlaValGlyThrPheValLysLeuGlyAsnTyrIleIleAsnGluThrLys++ 21425 : GTGGCAGCGGTTGGGACGTTCGTGAAACTGGGTAATTACattataaacgaaacgaaggt. : 21366 299 : >>> Target Intron 1 >>>> PheThrPheCysGlyTyrThrValAlaGlnLeuT : 309 1522 bp !!..! ! ! !!:! !|||!.!||| ! ++ValValHisGlyThrPhePheValGlyGlnAlaP 21365 : ........................agGTTGTGCACGGAACGTTTTTCGTCGGCCAAGCGT : 19813 310 : hrHisLeuPhePheLeuThrIleMetGlyGlnPheLeuIleAsnAlaAsnAspGluIleP : 329 !|||:!!|||||||||!.!:!!..!|||||||||:!!||||||||| !||||||:!:! heHisValPhePheLeuAsnValGlnGlyGlnPheValIleAsnAlaPheAspGluLeuT 19812 : TTCACGTTTTCTTTTTGAACGTCCAGGGACAATTTGTGATAAACGCATTCGACGAACTGT : 19753 330 : heAsnThr{Il} >>>> Target Intron 2 >>>> {e}TyrGluAlaHisTrpT : 338 :!:!!! !{||} 113 bp {|}||||||:!!!!.|||| yrAspLys{Il}++ ++{e}TyrGluSerGlnTrpT 19752 : ACGACAAG{AT}gt.........................ag{A}TACGAATCGCAGTGGT : 19613 339 : yrAsnGlySerSerArgThrGlnSerLeuTyrValLeuValLeuArgLysCysLeuAsnP : 358 ||||| !!!! !!|||||||||:!!||||||||||||!.!||||||!..|||||||||| yrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeuArgSerCysLeuAsnP 19612 : ATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTGAGAAGCTGCCTAAACC : 19553 359 : roProThrLeuThrGlyGlyGlyLeuIleValLeuAsnLeuAspSerPheValGlnIleL : 378 ||||| !||||||!.!||||||:!!! ..!||||||||| ||||||!.!:!!:!:: roProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSerPheAlaGluValI 19552 : CACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATCGTTCGCAGAGGTGA : 19493 379 : eu : 378 !! le 19492 : TT : 19491 vulgar: AmOr108 278 378 . KQ414772.1 21425 19490 - 240 M 19 57 5 0 2 I 0 1518 3 0 2 M 34 102 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 19491 21425 240 - . gene_id 3 ; sequence AmOr108 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 21369 21425 . - . KQ414772.1 exonerate:protein2genome:local exon 21369 21425 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 21367 21368 . - . intron_id 1 ; splice_site "gt" KQ414772.1 exonerate:protein2genome:local intron 19847 21368 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 19847 19848 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 19743 19846 . - . KQ414772.1 exonerate:protein2genome:local exon 19743 19846 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 19741 19742 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 19630 19742 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 19630 19631 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 19491 19629 . - . KQ414772.1 exonerate:protein2genome:local exon 19491 19629 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 19491 21425 240 - . alignment_id 3 ; Query AmOr108 ; Align 21426 279 57 ; Align 19847 298 102 ; Align 19629 333 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 188 Query range: 117 -> 233 Target range: 18099 -> 17751 118 : ArgArgAlaThrThrLeuCysIlePheTyrGluValIleValIlePheSerAlaIleMet : 137 :::::: !.!!|||||| ! .!!!:! !|||! !!.! !.!!!!!:!!.!!:!! LysGlnLeuAlaThrLeuAspArgIlePheProValAsnAlaTyrIleCysSerPheLeu 18099 : aaacaattAGCAACTCTCGATCGGATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTG : 18042 138 : PheIleMetIleProThrIleProProIleLeuAsnIleIleMetProLeuAsnGluSer : 157 ||||||...:!:||| ! !!! !:!::!!||| !! ! !!! !||| !!!! PheIleGlnValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIleThr 18041 : TTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACG : 17982 158 : ArgAspArgGluPheIleTyrProThrTyrPhePheIleAspGluGluLysTyrTyrTyr : 177 ! !..! !:!!|||:!! ||| !|||!:!|||:!!||||||! !:!!||||||||| ProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyrTyr 17981 : CCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTAT : 17922 178 : ProIleLeuThrTyrMetAlaThrValIleLeuIleValSerSerValTyrLeuAlaCys : 197 !|||:!! !:!! .!! !..!|||||||||||| ! !||||||! !|||||| TyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCys 17921 : TACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 17862 198 : AspThrAsnLeuValGlnIleValHisHisGlyCysAlaLeuLeuAlaIleSerGlyTyr : 217 ||||||!:!! !:!! !:!:|||!!.||| !|||!.!|||!!!|||:!::!!|||! AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly*** 17861 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGGTGA : 17802 218 : HisPheLysHisAlaValAspAspMetLysPheSerAsnGlyAsnTyr : 233 .!. ! !... ... :::...||||||:::||||||||| GluAsnLeuArgAspThrPhePheLeuSerPheSerSerGlyAsnTyr 17801 : GAAAACTTGAGagatacattttttctctcattttcgtCGGGAAACTAT : 17752 vulgar: AmOr108 117 233 . KQ414772.1 18099 17751 - 188 M 116 348 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17752 18099 188 - . gene_id 4 ; sequence AmOr108 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17752 18099 . - . KQ414772.1 exonerate:protein2genome:local exon 17752 18099 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17752 18099 188 - . alignment_id 4 ; Query AmOr108 ; Align 18100 118 348 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 160 Query range: 325 -> 377 Target range: 37064 -> 36908 326 : AspGluIlePheAsnThrIleTyrGluAlaHisTrpTyrAsnGlySerSerArgThrGln : 345 .!.|||:!:||| ! !! !|||...||| ! |||||||||.!!||| !!||||||||| GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 37064 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 37007 346 : SerLeuTyrValLeuValLeuArgLysCysLeuAsnProProThrLeuThrGlyGlyGly : 365 !!!||||||||||||!.!||||||!:! !!|||!.!|||||| !||||||!.!|||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 37006 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 36947 366 : LeuIleValLeuAsnLeuAspSerPheValGlnIle : 377 |||||| !|||||||||!!:!!!|||!.!:::::: LeuIleSerLeuAsnLeuGluThrPheAlaGluVal 36946 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGaggta : 36909 vulgar: AmOr108 325 377 . KQ414772.1 37064 36908 - 160 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 36909 37064 160 - . gene_id 5 ; sequence AmOr108 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 36909 37064 . - . KQ414772.1 exonerate:protein2genome:local exon 36909 37064 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 36909 37064 160 - . alignment_id 5 ; Query AmOr108 ; Align 37065 326 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 160 Query range: 325 -> 377 Target range: 35630 -> 35474 326 : AspGluIlePheAsnThrIleTyrGluAlaHisTrpTyrAsnGlySerSerArgThrGln : 345 .!.|||:!:||| ! !! !|||...||| ! |||||||||.!!||| !!||||||||| GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 35630 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 35573 346 : SerLeuTyrValLeuValLeuArgLysCysLeuAsnProProThrLeuThrGlyGlyGly : 365 !!!||||||||||||!.!||||||!:! !!|||!.!|||||| !||||||!.!|||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 35572 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 35513 366 : LeuIleValLeuAsnLeuAspSerPheValGlnIle : 377 |||||| !|||||||||!!:!!!|||!.!:!!:!! LeuIleSerLeuAsnLeuGluThrPheAlaGluVal 35512 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGAGGTA : 35475 vulgar: AmOr108 325 377 . KQ414772.1 35630 35474 - 160 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 35475 35630 160 - . gene_id 6 ; sequence AmOr108 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 35475 35630 . - . KQ414772.1 exonerate:protein2genome:local exon 35475 35630 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 35475 35630 160 - . alignment_id 6 ; Query AmOr108 ; Align 35631 326 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 145 Query range: 332 -> 377 Target range: 41380 -> 41245 333 : TyrGluAlaHisTrpTyrAsnGlySerSerArgThrGlnSerLeuTyrValLeuValLeu : 352 |||!!:||| |||||||||.!!!!! !!|||||||||!!!||||||:!!|||!.!||| TyrAspAlaValTrpTyrAsnSerThrProArgThrGlnThrLeuTyrMetLeuAlaLeu 41380 : TACGATGCAGTATGGTACAACAGTACGCCAAGAACGCAAACTTTGTACATGCTAGCTTTG : 41323 353 : ArgLysCysLeuAsnProProThrLeuThrGlyGlyGlyLeuIleValLeuAsnLeuAsp : 372 |||!:! !|||!.!|||||| !||||||!.!|||||||||||| |||||||||::: ArgArgThrLeuThrProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGlu 41322 : AGGAGGACTTTAACTCCACCACTGCTCACTGCAGGAGGACtgatttcgttgaatttggaa : 41263 373 : SerPheValGlnIle : 377 :::||| !:!!:!! ThrPheSerLysVal 41262 : actttttcGAAGGTA : 41246 vulgar: AmOr108 332 377 . KQ414772.1 41380 41245 - 145 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 41246 41380 145 - . gene_id 7 ; sequence AmOr108 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 41246 41380 . - . KQ414772.1 exonerate:protein2genome:local exon 41246 41380 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 41246 41380 145 - . alignment_id 7 ; Query AmOr108 ; Align 41381 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 141 Query range: 334 -> 377 Target range: 28110 -> 27981 335 : AlaHisTrpTyrAsnGlySerSerArgThrGlnSerLeuTyrValLeuValLeuArgLys : 354 ||| |||||||||.!!!!!||||||||||||:!!||||||:!!|||!.!||||||!:! AlaThrTrpTyrAsnSerThrSerArgThrGlnAlaLeuTyrMetLeuAlaLeuArgArg 28110 : GCAACATGGTACAACAGTACATCTAGAACGCAAGCTTTGTACATGCTAGCTTTGAGAAGG : 28053 355 : CysLeuAsnProProThrLeuThrGlyGlyGlyLeuIleValLeuAsnLeuAspSerPhe : 374 !|||!..|||||| !:!!|||!.!|||||||||||| !|||||||||!!:!!!||| AsnLeuThrProProLeuIleThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPhe 28052 : AACTTGACACCACCACTGATCACCGCCGGAGGACTGATTTCCTTGAATTTGGAGACCTTC : 27993 375 : ValGlnIle : 377 !.!:!!:!! AlaGluVal 27992 : GCGGAGGTA : 27982 vulgar: AmOr108 334 377 . KQ414772.1 28110 27981 - 141 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 27982 28110 141 - . gene_id 8 ; sequence AmOr108 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 27982 28110 . - . KQ414772.1 exonerate:protein2genome:local exon 27982 28110 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 27982 28110 141 - . alignment_id 8 ; Query AmOr108 ; Align 28111 335 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 136 Query range: 332 -> 377 Target range: 31898 -> 31763 333 : TyrGluAlaHisTrpTyrAsnGlySerSerArgThrGlnSerLeuTyrValLeuValLeu : 352 |||...||| ||||||!!..!!!!! !!|||||||||!!!||||||! !|||!.!||| TyrSerAlaThrTrpTyrLysSerThrProArgThrGlnThrLeuTyrGlyLeuAlaLeu 31898 : TACAGTGCAACGTGGTACAAGAGTACGCCGAGAACGCAAACTTTGTACGGGCTAGCTTTG : 31841 353 : ArgLysCysLeuAsnProProThrLeuThrGlyGlyGlyLeuIleValLeuAsnLeuAsp : 372 |||!:! !!|||!.!||||||..!||||||!.!|||||||||||| !|||||||||!!: ArgArgGlyLeuThrProProValLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGlu 31840 : AGAAGAGGCTTGACTCCACCGGTGCTCACAGCTGGAGGATTGATTTCGTTGAATCTGGAG : 31781 373 : SerPheValGlnIle : 377 !!!|||!.!:!!:!: ThrPheAlaGluVal 31780 : ACTTTTGCTGAGGTG : 31764 vulgar: AmOr108 332 377 . KQ414772.1 31898 31763 - 136 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 31764 31898 136 - . gene_id 9 ; sequence AmOr108 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 31764 31898 . - . KQ414772.1 exonerate:protein2genome:local exon 31764 31898 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 31764 31898 136 - . alignment_id 9 ; Query AmOr108 ; Align 31899 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 323 -> 377 Target range: 16806 -> 16644 324 : AlaAsnAspGluIlePheAsnThrIleTyrGluAlaHisTrpTyrAsnGlySerSerArg : 343 .!!..!|||!!:! ! !.!:!!! !||||||:!! ||||||!...!!||||||!:! ThrArgAspAspAsnGluThrSerArgTyrGluSerLeuTrpTyrThrSerSerSerLys 16806 : ACACGCGATGATAATGAAACTTCCAGATACGAATCATTATGGTACACAAGTTCTTCGAAA : 16749 344 : ThrGlnSerLeuTyrValLeuValLeuArgLysCysLeuAsnProProThrLeuThrGly : 363 ||||||:!!|||||||||:!!!.!||||||!:! !|||!..||| !! !||||||!.! ThrGlnAlaLeuTyrValValAlaLeuArgArgAsnLeuThrProThrCysLeuThrAla 16748 : ACACAAGCATTATACGTGGTAGCGTTACGAAGAAACCTAACACCTACCTGTTTAACGGCT : 16689 364 : GlyGlyLeuIleValLeuAsnLeuAspSerPheValGlnIle : 377 |||||||||:!: !||||||:!!.!.||||||!.!:!!:!! GlyGlyLeuValGlnLeuAsnMetGlnSerPheAlaGluVal 16688 : GGCGGTTTAGTGCAACTGAACATGCAAAGCTTCGCAGAGGTA : 16645 vulgar: AmOr108 323 377 . KQ414772.1 16806 16644 - 135 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 16645 16806 135 - . gene_id 10 ; sequence AmOr108 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 16645 16806 . - . KQ414772.1 exonerate:protein2genome:local exon 16645 16806 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 16645 16806 135 - . alignment_id 10 ; Query AmOr108 ; Align 16807 324 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 129 Query range: 120 -> 205 Target range: 45991 -> 45736 121 : ThrThrLeuCysIlePheTyrGluValIleValIlePheSerAlaIleMetPheIleMet : 140 :!!..!|||! ||| ! !..!|||! !:!! !.!!.!!!.! !:!!||| !! SerValLeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThr 45991 : TCCGTTTTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACC : 45934 141 : IleProThrIleProProIleLeuAsnIleIleMetProLeuAsnGluSerArgAspArg : 160 ||| !|||||| !||||||:!!:!!||| |||||||||||||||||| ||| AlaProLeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArg 45933 : GCGCCCCTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGT : 45874 161 : GluPheIleTyrProThrTyrPhePheIleAspGluGluLysTyrTyrTyrProIleLeu : 180 !!:! !||| !.!!|||! !!:!.!!:!! !!!: ! ||||||||| !:!!:!! LeuTyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValVal 45873 : TTGTACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTG : 45814 181 : ThrTyrMetAlaThrValIleLeuIleValSerSerValTyrLeuAlaCysAspThrAsn : 200 !|||! ::!.!! !||| !!!:!.!.!! !||| !:!!!.!..!|||! !! ! GlyTyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAlaAspIleIle 45813 : GGGTACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATT : 45754 201 : LeuValGlnIleVal : 205 :!!:!!!!.:!!||| MetIleHisLeuVal 45753 : ATGATACATCTTGTA : 45737 vulgar: AmOr108 120 205 . KQ414772.1 45991 45736 - 129 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45737 45991 129 - . gene_id 11 ; sequence AmOr108 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45737 45991 . - . KQ414772.1 exonerate:protein2genome:local exon 45737 45991 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45737 45991 129 - . alignment_id 11 ; Query AmOr108 ; Align 45992 121 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 332 -> 364 Target range: 23236 -> 23140 333 : TyrGluAlaHisTrpTyrAsnGlySerSerArgThrGlnSerLeuTyrValLeuValLeu : 352 |||...||| ||||||||||||!!! !!!:!..!|||:!!||||||||||||!.!||| TyrSerAlaThrTrpTyrAsnGlyThrProLysValGlnAlaLeuTyrValLeuAlaLeu 23236 : TACAGCGCTACATGGTACAACGGTACACCGAAAGTGCAAGCTTTGTACGTGCTAGCTTTG : 23179 353 : ArgLysCysLeuAsnProProThrLeuThrGlyGly : 364 |||!:! !|||!.!|||||| !:!!|||!.!||| ArgArgAsnLeuThrProProLeuIleThrAlaGly 23178 : AGAAGGAACTTGACTCCACCGCTGATCACTGCCGGA : 23141 vulgar: AmOr108 332 364 . KQ414772.1 23236 23140 - 104 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 23141 23236 104 - . gene_id 12 ; sequence AmOr108 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 23141 23236 . - . KQ414772.1 exonerate:protein2genome:local exon 23141 23236 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 23141 23236 104 - . alignment_id 12 ; Query AmOr108 ; Align 23237 333 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 221 Query range: 121 -> 216 Target range: 14178 -> 13893 122 : PhePheCysSerPheTyrGluValSerIleTyrSerCysGlyPheMetPheLeuSerMet : 141 !:!.!! !!.!!:!! !|||!:! ! !|||! !.!!:!!|||:!!!!!! ! TyrIleValLysTyrSerIleValAsnAlaIleValCysValIleLeuPheValThrThr 14178 : TACATTGTCAAATATTCGATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGACCACG : 14121 142 : ProSerIleProLeuIleMetAsnValIleMetProLeuAsnGluSerArgSerArgGlu : 161 ||| !! !|||! !|||:!!:!!:!!:!!:!:||| !||||||||||||..! !! ! ProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAla 14120 : CCGGTGACACCGCATATTTTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCG : 14061 162 : LeuValTyrProSerTyrTyrPheValAspGluGlnLysTyrTyrTyrLeuIleThrGly : 181 ! !:!!||||||:!!|||||||||..!||||||!!.|||||| !! ! !|||! ! ! TyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThr 14060 : TACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACG : 14001 182 : HisMetLeuAlaValCysLeuGlyHisValPheValTyrIleAlaCysAspIleAsnLeu : 201 |||||| !:!!||| !|||! ! !!!:!||||||:!!|||||||||! !!:!! ! HisMetAlaSerValIleLeuValValPheTyrValTyrValAlaCysAspThrSerTyr 14000 : CACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTAC : 13941 202 : IleHisValValHisHisGlyCysAlaLeuLeuThrIleSerGly : 216 |||:!!||||||!!.|||||||||!.!||||||.!!:!:|||||| IleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly 13940 : ATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGg : 13894 vulgar: AmOr107 121 216 . KQ414772.1 14178 13893 - 221 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13894 14178 221 - . gene_id 1 ; sequence AmOr107 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13894 14178 . - . KQ414772.1 exonerate:protein2genome:local exon 13894 14178 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13894 14178 221 - . alignment_id 1 ; Query AmOr107 ; Align 14179 122 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 216 Query range: 119 -> 216 Target range: 29646 -> 29355 120 : AlaMetPhePheCysSerPheTyrGluValSerIleTyrSerCysGlyPheMetPheLeu : 139 ...:::|||||| ||| ::! !!.!!:! ! !! !||| ! !!!!:||| ! CysLeuPhePheSerSerArgPheThrAlaAsnGlyIlePheCysTyrValIlePheThr 29646 : tgtctatttttttcttcacgttTCACAGCAAATGGAATCTTCTGCTACGTTATATTCACC : 29589 140 : SerMetProSerIleProLeuIleMetAsnValIleMetProLeuAsnGluSerArgSer : 159 |||:!! !!! !! !|||! !:!!:!::!!:!!||| !||| !||||||||||||.!! SerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGly 29588 : TCAGTGGCGATAACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGA : 29529 160 : ArgGluLeuValTyrProSerTyrTyrPheValAspGluGlnLysTyrTyrTyrLeuIle : 179 !! !!!:!!||||||:!!|||||| !:!!||||||:!!:!!:!!||||||! !:!: ValGlyPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrTyrLeu 29528 : GTGGGCTTCATTTATCCTGCATACTACGGTCTTGACGAAGAGGAGCATTACTACTATCTG : 29469 180 : ThrGlyHisMetLeuAlaValCysLeuGlyHisValPheValTyrIleAlaCysAspIle : 199 ! !||||||||||||:!!||| !! ! !!||||||||||||:!!||||||! MetGlyHisMetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThr 29468 : ATGGGTCACATGCTTTCCGTGATAACCGTCGTGTTTTTCGTCTACATCTCCTGTGACACG : 29409 200 : AsnLeuIleHisValValHisHisGlyCysAlaLeuLeuThrIleSerGly : 216 ! !! !!!::!!||||||!!.|||!.!|||!.!||||||!.!:!!|||||| IleTyrMetAsnValValGlnHisAlaCysGlyLeuLeuAsnValSerGly 29408 : ATCTATATGAATGTCGTGCAACACGCGTGTGGATTATTGAACGTCTCTGGG : 29356 vulgar: AmOr107 119 216 . KQ414772.1 29646 29355 - 216 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29356 29646 216 - . gene_id 2 ; sequence AmOr107 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29356 29646 . - . KQ414772.1 exonerate:protein2genome:local exon 29356 29646 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 29356 29646 216 - . alignment_id 2 ; Query AmOr107 ; Align 29647 120 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 212 Query range: 125 -> 216 Target range: 38042 -> 37769 126 : PheTyrGluValSerIleTyrSerCysGlyPheMetPheLeuSerMetProSerIlePro : 145 !:!!:! !|||!:! ! ! !||| ! !!!!:||| !|||:!! !!! !! ||| TyrPheThrValAsnGlyLeuPheCysTyrValIlePheThrSerValAlaIleThrPro 38042 : TATTTCACAGTAAACGGACTGTTTTGCTACGTTATATTCACCTCAGTGGCGATTACGCCT : 37985 146 : LeuIleMetAsnValIleMetProLeuAsnGluSerArgSerArgGluLeuValTyrPro : 165 ! !:!!:!::!!:!!||| ||| !||||||||||||.!! !!!:!!!:!!|||||| ArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValAspPheIleTyrPro 37984 : CGTGTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTCATTTATCCT : 37925 166 : SerTyrTyrPheValAspGluGlnLysTyrTyrTyrLeuIleThrGlyHisMetLeuAla : 185 :!!|||||| !:!!||||||:!!:!!:!!||||||:!!:!:! !||||||||||||..! AlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHisMetLeuCys 37924 : GCATACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCACATGCTCTGC : 37865 186 : ValCysLeuGlyHisValPheValTyrIleAlaCysAspIleAsnLeuIleHisValVal : 205 ||| !! ! !!||||||||||||:!!||||||! ! !! !!!: !:!!||| ValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMetSerIleVal 37864 : GTGATAACTGTAGTGTTTTTCGTGTACATCTCCTGTGACACGATCTACATGAGCATCGTT : 37805 206 : HisHisGlyCysAlaLeuLeuThrIleSerGly : 216 !!.|||!.!|||!.!||||||!.!:!!|||||| GlnHisAlaCysGlyLeuLeuAsnValSerGly 37804 : CAACACGCGTGCGGATTACTGAACGTCTCTGGG : 37770 vulgar: AmOr107 125 216 . KQ414772.1 38042 37769 - 212 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37770 38042 212 - . gene_id 3 ; sequence AmOr107 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37770 38042 . - . KQ414772.1 exonerate:protein2genome:local exon 37770 38042 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 37770 38042 212 - . alignment_id 3 ; Query AmOr107 ; Align 38043 126 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 201 Query range: 125 -> 216 Target range: 42745 -> 42472 126 : PheTyrGluValSerIleTyrSerCysGlyPheMetPheLeuSerMetProSerIlePro : 145 ...::: |||!!! ! !!!||| ! ||||||:!!||| !|||! !|||||| IlePheThrValThrGlyIleCysCysPheThrMetPheIleSerAlaProTyrIlePro 42745 : attttcacagTAACTGGAATATGTTGCTTCACAATGTTTATCTCTGCGCCTTATATACCG : 42688 146 : LeuIleMetAsnValIleMetProLeuAsnGluSerArgSerArgGluLeuValTyrPro : 165 ! !:!! :!!|||!!::!: !! !||||||||||||!.! !! !!!:!!|||||| HisValTyrAspValMetLeuSerLysAsnGluSerArgLysLeuGlyPheIleTyrPro 42687 : CATGTATATGATGTTATGTTATCGAAAAACGAGTCACGAAAGTTGGGTTTCATTTACCCT : 42628 166 : SerTyrTyrPheValAspGluGlnLysTyrTyrTyrLeuIleThrGlyHisMetLeuAla : 185 :!!|||||| !||||||:!!.!.||||||||||||! !|||! !!.!|||||| !:!! AlaTyrTyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAlaHisMetThrSer 42627 : GCCTATTATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCTCACATGACATCT : 42568 186 : ValCysLeuGlyHisValPheValTyrIleAlaCysAspIleAsnLeuIleHisValVal : 205 ! ! !!|||! ! !!|||..!!:!|||:!!||||||! ! !! !!!::!!:!!||| GlyGlyLeuValValPhePheThrPheIleSerCysAspThrIleTyrMetAsnIleVal 42567 : GGGGGCTTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTACATGAATATCGTG : 42508 206 : HisHisGlyCysAlaLeuLeuThrIleSerGly : 216 !!.|||!.!|||!.!|||||| !||||||||| GlnHisAlaCysGlyLeuLeuLeuIleSerGly 42507 : CAACACGCGTGCGGATTGTTGTTGATTTCTGGG : 42473 vulgar: AmOr107 125 216 . KQ414772.1 42745 42472 - 201 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42473 42745 201 - . gene_id 4 ; sequence AmOr107 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42473 42745 . - . KQ414772.1 exonerate:protein2genome:local exon 42473 42745 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42473 42745 201 - . alignment_id 4 ; Query AmOr107 ; Align 42746 126 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 196 Query range: 133 -> 216 Target range: 24425 -> 24176 134 : CysGlyPheMetPheLeuSerMetProSerIleProLeuIleMetAsnValIleMetPro : 153 ||| ! !!:!:||| !:!!:!! !!! !! !|||! !:!!:!::!!:!!||| !||| CysTyrValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerPro 24425 : TGCTACGTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCG : 24368 154 : LeuAsnGluSerArgSerArgGluLeuValTyrProSerTyrTyrPheValAspGluGln : 173 !||||||||||||.!! !! !!!:!!||||||:!! !!||| !|||||||||:!! LysAsnGluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGlu 24367 : AAAAACGAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAG : 24308 174 : LysTyrTyrTyrLeuIleThrGlyHisMetLeuAlaValCysLeuGlyHisValPheVal : 193 :!!:!!||||||! !:!:! !||||||||||||:!!||| !! ! !!|||||| GluHisTyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheVal 24307 : GAGCATTACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTC : 24248 194 : TyrIleAlaCysAspIleAsnLeuIleHisValValHisHisGlyCysAlaLeuLeuThr : 213 ||||||:!!||||||! ! !! !!!::!!:!!|||!!.|||!.!|||!.!||||||!.! TyrIleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsn 24247 : TACATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAAC : 24188 214 : IleSerGly : 216 :!!|||||| LeuSerGly 24187 : CTCTCTGGG : 24177 vulgar: AmOr107 133 216 . KQ414772.1 24425 24176 - 196 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24177 24425 196 - . gene_id 5 ; sequence AmOr107 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24177 24425 . - . KQ414772.1 exonerate:protein2genome:local exon 24177 24425 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 24177 24425 196 - . alignment_id 5 ; Query AmOr107 ; Align 24426 134 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 187 Query range: 136 -> 215 Target range: 20559 -> 20322 137 : MetPheLeuSerMetProSerIleProLeuIleMetAsnValIleMetProLeuAsnGlu : 156 !!:||||||!!!:!!|||! ! !|||:!!|||:!!:!!:!! ! !|||||||||:!! IlePheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsnLys 20559 : ATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAACAAA : 20502 157 : SerArgSerArgGluLeuValTyrProSerTyrTyrPheValAspGluGlnLysTyrTyr : 176 !!!|||!.!|||! !!!!|||||||||:!!||||||!:::!!||| :!!:!!|||||| ThrArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyr 20501 : ACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTAC : 20442 177 : TyrLeuIleThrGlyHisMetLeuAlaValCysLeuGlyHisValPheValTyrIleAla : 196 :!!!!:! ! !|||!!::!! !||| :!! ! ! ! !!:!!!:! !||| MetIleMetIleIleHisIleMetPheValValIleMetValCysValIlePheCysAla 20441 : ATGATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGTGCT : 20382 197 : CysAspIleAsnLeuIleHisValValHisHisGlyCysAlaLeuLeuThrIleSer : 215 ||||||!!:|||! !:!::!!!.!|||!!.|||!.!|||!.!||||||.!!:!!!!! CysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaValThr 20381 : TGCGACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTCACC : 20323 vulgar: AmOr107 136 215 . KQ414772.1 20559 20322 - 187 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20323 20559 187 - . gene_id 6 ; sequence AmOr107 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20323 20559 . - . KQ414772.1 exonerate:protein2genome:local exon 20323 20559 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20323 20559 187 - . alignment_id 6 ; Query AmOr107 ; Align 20560 137 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 170 Query range: 125 -> 216 Target range: 18075 -> 17802 126 : PheTyrGluValSerIleTyrSerCysGlyPheMetPheLeuSerMetProSerIlePro : 145 .!!!:! !|||!:! |||! !|||..!|||:!!|||:!!..!:!!|||!!! !! IlePheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpSerThr 18075 : ATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGTCGACC : 18018 146 : LeuIleMetAsnValIleMetProLeuAsnGluSerArgSerArgGluLeuValTyrPro : 165 ! !:!::!!||| ! !! ! !!! !||| !!!!! !||| !:!!!!!||| ||| ArgLeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuGlnPheValIlePro 18017 : CGATTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCC : 17958 166 : SerTyrTyrPheValAspGluGlnLysTyrTyrTyrLeuIleThrGlyHisMetLeuAla : 185 .!!|||||||||||||||||| !:!!|||||||||! !|||! ! !||| !..! GlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCys 17957 : GGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGC : 17898 186 : ValCysLeuGlyHisValPheValTyrIleAlaCysAspIleAsnLeuIleHisValVal : 205 ..! !||| ! ||| ! |||||| !|||||||||! !!:!! !!!: :!!||| ThrIleLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuVal 17897 : ACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTG : 17838 206 : HisHisGlyCysAlaLeuLeuThrIleSerGly : 216 !!.||| !|||!.!|||!!!.!!:!::!!||| GlnHisThrCysGlyLeuPheAlaValAlaGly 17837 : CAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 17803 vulgar: AmOr107 125 216 . KQ414772.1 18075 17802 - 170 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17803 18075 170 - . gene_id 7 ; sequence AmOr107 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17803 18075 . - . KQ414772.1 exonerate:protein2genome:local exon 17803 18075 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17803 18075 170 - . alignment_id 7 ; Query AmOr107 ; Align 18076 126 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 154 Query range: 325 -> 380 Target range: 35630 -> 35465 326 : GluGluValPheLysThrIleTyrAspAlaArgTrpTyrTyrGlySerSerLysThrGln : 345 :!!|||:!!||| !! !|||..!|||!:!|||||| !!.!!||| !!!:!|||||| GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 35630 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 35573 346 : SerLeuTyrLeuLeuValLeuArgLysCysLeuAsnProProLysLeuThrGlyGlyGly : 365 !!!||||||:!!|||!.!||||||!:! !!|||!.!|||||| !||||||!.!|||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 35572 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 35513 366 : LeuIleAlaLeuAsnLeuAspSerPheValLysValLeuLysThr : 380 ||||||:!!|||||||||!!:!!!|||!.!:!!||| !! !||| LeuIleSerLeuAsnLeuGluThrPheAlaGluValAsnMetThr 35512 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGAGGTAAATATGACA : 35466 vulgar: AmOr107 325 380 . KQ414772.1 35630 35465 - 154 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 35466 35630 154 - . gene_id 8 ; sequence AmOr107 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 35466 35630 . - . KQ414772.1 exonerate:protein2genome:local exon 35466 35630 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 35466 35630 154 - . alignment_id 8 ; Query AmOr107 ; Align 35631 326 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 153 Query range: 325 -> 377 Target range: 37064 -> 36908 326 : GluGluValPheLysThrIleTyrAspAlaArgTrpTyrTyrGlySerSerLysThrGln : 345 :!!|||:!!||| !! !|||..!|||!:!|||||| !!.!!||| !!!:!|||||| GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 37064 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 37007 346 : SerLeuTyrLeuLeuValLeuArgLysCysLeuAsnProProLysLeuThrGlyGlyGly : 365 !!!||||||:!!|||!.!||||||!:! !!|||!.!|||||| !||||||!.!|||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 37006 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 36947 366 : LeuIleAlaLeuAsnLeuAspSerPheValLysVal : 377 ||||||:!!|||||||||!!:!!!|||!.!:::||| LeuIleSerLeuAsnLeuGluThrPheAlaGluVal 36946 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGaggta : 36909 vulgar: AmOr107 325 377 . KQ414772.1 37064 36908 - 153 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 36909 37064 153 - . gene_id 9 ; sequence AmOr107 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 36909 37064 . - . KQ414772.1 exonerate:protein2genome:local exon 36909 37064 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 36909 37064 153 - . alignment_id 9 ; Query AmOr107 ; Align 37065 326 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 146 Query range: 332 -> 377 Target range: 41380 -> 41245 333 : TyrAspAlaArgTrpTyrTyrGlySerSerLysThrGlnSerLeuTyrLeuLeuValLeu : 352 ||||||||| !|||||| !!.!!!!! !!!:!||||||!!!||||||:!!|||!.!||| TyrAspAlaValTrpTyrAsnSerThrProArgThrGlnThrLeuTyrMetLeuAlaLeu 41380 : TACGATGCAGTATGGTACAACAGTACGCCAAGAACGCAAACTTTGTACATGCTAGCTTTG : 41323 353 : ArgLysCysLeuAsnProProLysLeuThrGlyGlyGlyLeuIleAlaLeuAsnLeuAsp : 372 |||!:! !|||!.!|||||| !||||||!.!||||||||||||:::|||||||||::: ArgArgThrLeuThrProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGlu 41322 : AGGAGGACTTTAACTCCACCACTGCTCACTGCAGGAGGACtgatttcgttgaatttggaa : 41263 373 : SerPheValLysVal : 377 :::||| !|||||| ThrPheSerLysVal 41262 : actttttcGAAGGTA : 41246 vulgar: AmOr107 332 377 . KQ414772.1 41380 41245 - 146 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 41246 41380 146 - . gene_id 10 ; sequence AmOr107 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 41246 41380 . - . KQ414772.1 exonerate:protein2genome:local exon 41246 41380 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 41246 41380 146 - . alignment_id 10 ; Query AmOr107 ; Align 41381 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 321 -> 380 Target range: 28149 -> 27972 322 : IleAspSerAsnGluGluValPheLysThrIleTyrAspAlaArgTrpTyrTyrGlySer : 341 :!!.!.!:!! !:!!:!!:!!||| !! !! !! !|||! !|||||| !!.!!!!! LeuGlnAsnIleGlnLysLeuPheValArgArgCysAlaAlaThrTrpTyrAsnSerThr 28149 : CTTCAAAACATTCAGAAGTTGTTCGTTCGCAGATGCGCTGCAACATGGTACAACAGTACA : 28092 342 : SerLysThrGlnSerLeuTyrLeuLeuValLeuArgLysCysLeuAsnProProLysLeu : 361 |||!:!||||||:!!||||||:!!|||!.!||||||!:! !|||!..|||||| !:!! SerArgThrGlnAlaLeuTyrMetLeuAlaLeuArgArgAsnLeuThrProProLeuIle 28091 : TCTAGAACGCAAGCTTTGTACATGCTAGCTTTGAGAAGGAACTTGACACCACCACTGATC : 28032 362 : ThrGlyGlyGlyLeuIleAlaLeuAsnLeuAspSerPheValLysValLeuLysThr : 380 |||!.!||||||||||||:!!|||||||||!!:!!!|||!.!:!!||| ! !||| ThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGluValSerValThr 28031 : ACCGCCGGAGGACTGATTTCCTTGAATTTGGAGACCTTCGCGGAGGTAAGTGTAACA : 27973 vulgar: AmOr107 321 380 . KQ414772.1 28149 27972 - 135 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 27973 28149 135 - . gene_id 11 ; sequence AmOr107 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 27973 28149 . - . KQ414772.1 exonerate:protein2genome:local exon 27973 28149 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 27973 28149 135 - . alignment_id 11 ; Query AmOr107 ; Align 28150 322 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 127 -> 205 Target range: 45970 -> 45736 128 : GluValSerIleTyrSerCysGlyPheMetPheLeuSerMetProSerIleProLeuIle : 147 ..!|||!!!||||||! ! ! ! !! !:!!|||! !!!! !||| !||||||!!!||| SerValThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIle 45970 : TCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATC : 45913 148 : MetAsnValIleMetProLeuAsnGluSerArgSerArgGluLeuValTyrProSerTyr : 167 :!!:!!:!!||| |||||||||||||||||| !!||| !! !!.!||| !:!!||| LeuAspLeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyr 45912 : CTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTAC : 45853 168 : TyrPheValAspGluGlnLysTyrTyrTyrLeuIleThrGlyHisMetLeuAlaValCys : 187 ! !!:! !!:!! !.!. ! |||||||||! !:!!..!|||:!!! !||| ! CysTyrPheAsnProAspAspTyrTyrTyrTyrValValGlyTyrThrSerAlaCysIle 45852 : TGTTACTTCAATCCGGACGACTACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATA : 45793 188 : LeuGlyHisValPheValTyrIleAlaCysAspIleAsnLeuIleHisValVal : 205 ! ! !! !.!!||| !:!!!.!..!||||||! !:!!||||||:!!||| GlyMetAlaGlyLeuValLeuValGlyAlaAspIleIleMetIleHisLeuVal 45792 : GGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATTATGATACATCTTGTA : 45737 vulgar: AmOr107 127 205 . KQ414772.1 45970 45736 - 132 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45737 45970 132 - . gene_id 12 ; sequence AmOr107 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45737 45970 . - . KQ414772.1 exonerate:protein2genome:local exon 45737 45970 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45737 45970 132 - . alignment_id 12 ; Query AmOr107 ; Align 45971 128 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 332 -> 377 Target range: 31898 -> 31763 333 : TyrAspAlaArgTrpTyrTyrGlySerSerLysThrGlnSerLeuTyrLeuLeuValLeu : 352 |||..!|||! !|||||| ! .!!!!! !!!:!||||||!!!|||||| !|||!.!||| TyrSerAlaThrTrpTyrLysSerThrProArgThrGlnThrLeuTyrGlyLeuAlaLeu 31898 : TACAGTGCAACGTGGTACAAGAGTACGCCGAGAACGCAAACTTTGTACGGGCTAGCTTTG : 31841 353 : ArgLysCysLeuAsnProProLysLeuThrGlyGlyGlyLeuIleAlaLeuAsnLeuAsp : 372 |||!:! !!|||!.!|||||| !||||||!.!||||||||||||:!!|||||||||!!: ArgArgGlyLeuThrProProValLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGlu 31840 : AGAAGAGGCTTGACTCCACCGGTGCTCACAGCTGGAGGATTGATTTCGTTGAATCTGGAG : 31781 373 : SerPheValLysVal : 377 !!!|||!.!:!!||| ThrPheAlaGluVal 31780 : ACTTTTGCTGAGGTG : 31764 vulgar: AmOr107 332 377 . KQ414772.1 31898 31763 - 132 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 31764 31898 132 - . gene_id 13 ; sequence AmOr107 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 31764 31898 . - . KQ414772.1 exonerate:protein2genome:local exon 31764 31898 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 31764 31898 132 - . alignment_id 13 ; Query AmOr107 ; Align 31899 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 332 -> 377 Target range: 16779 -> 16644 333 : TyrAspAlaArgTrpTyrTyrGlySerSerLysThrGlnSerLeuTyrLeuLeuValLeu : 352 |||!!::!! !|||||| .!!|||||||||||||||:!!||||||:!!:!!!.!||| TyrGluSerLeuTrpTyrThrSerSerSerLysThrGlnAlaLeuTyrValValAlaLeu 16779 : TACGAATCATTATGGTACACAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCGTTA : 16722 353 : ArgLysCysLeuAsnProProLysLeuThrGlyGlyGlyLeuIleAlaLeuAsnLeuAsp : 372 |||!:! !|||!..||| !! ||||||!.!|||||||||:!: !||||||:!!.!. ArgArgAsnLeuThrProThrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMetGln 16721 : CGAAGAAACCTAACACCTACCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATGCAA : 16662 373 : SerPheValLysVal : 377 ||||||!.!:!!||| SerPheAlaGluVal 16661 : AGCTTCGCAGAGGTA : 16645 vulgar: AmOr107 332 377 . KQ414772.1 16779 16644 - 130 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 16645 16779 130 - . gene_id 14 ; sequence AmOr107 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 16645 16779 . - . KQ414772.1 exonerate:protein2genome:local exon 16645 16779 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 16645 16779 130 - . alignment_id 14 ; Query AmOr107 ; Align 16780 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 276 -> 332 Target range: 12873 -> 12705 277 : IleIleValThrPheThrGlyThrPheIleLysLeuThrSerMetGluIleGlyGlyArg : 296 :!:|||:!! ! ||| !:!!!::! !:!!:!!:!!!:! !||||||..!!.!..! LeuIleIleLeuArgThrIleSerTrpLysGlnValSerAsnSerGluIleAsnAlaGlu 12873 : CTGATCATCCTCAGAACAATTTCTTGGAAACAGGTGTCGAACTCGGAGATTAATGCGGAG : 12816 297 : PhePheThrPheCysThrPheThrIleGlyGlnLeuThrHisLeuLeuPheLeuMetVal : 316 ||| !! ! !|||||||||! !:!: !||||||..!|||:!!|||!:!|||! :!! PheAlaLysAspCysThrPheIleValIleGlnLeuValHisIleLeuTyrLeuThrLeu 12815 : TTTGCCAAGGATTGCACATTTATCGTGATTCAATTGGTACACATACTTTACCTAACTCTT : 12756 317 : MetGlyGlnPheLeuIleAspSerAsnGluGluValPheLysThrIle : 332 ...|||||||||:!!||||||:!!|||||||||:!!|||:!!:!!!!: GlnGlyGlnPheValIleAspAlaAsnGluGluIlePheGluSerMet 12755 : CAAGGACAATTCGTGATCGACGCGAACGAGGAAATCTTCGAATCGATG : 12706 vulgar: AmOr107 276 332 . KQ414772.1 12873 12705 - 122 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 12706 12873 122 - . gene_id 15 ; sequence AmOr107 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 12706 12873 . - . KQ414772.1 exonerate:protein2genome:local exon 12706 12873 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 12706 12873 122 - . alignment_id 15 ; Query AmOr107 ; Align 12874 277 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr102 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 141 -> 192 Target range: 45964 -> 45814 142 : AlaLeuLeuIleAlaLeuValLeuPheLeuLeuIleProLeuIleSerProMetLeuAsp : 161 .!!:!!! !|||!.!:!! !:!!|||! ! ! ||||||||| !! !!!:|||||| ThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeuAsp 45964 : ACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTGGAC : 45907 162 : ValPheLeuProLeuAsnGluThrArgProArgGlnGlnLeuLeuLysValAsnTyrLeu : 181 :!!.!!! !||||||||||||:!!||||||||| ! ! !! !|||!.! |||! ! LeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAla---TyrCys 45906 : CTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCC---TACTGT : 45850 182 : ValPheAsnAspAspAspTyrPhePheTyrVal : 192 !|||||| |||||||||!:!!:!|||||| TyrPheAsnProAspAspTyrTyrTyrTyrVal 45849 : TACTTCAATCCGGACGACTACTATTATTACGTC : 45815 vulgar: AmOr102 141 192 . KQ414772.1 45964 45814 - 101 M 37 111 G 1 0 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45815 45964 101 - . gene_id 1 ; sequence AmOr102 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45815 45964 . - . KQ414772.1 exonerate:protein2genome:local exon 45815 45964 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 45815 45964 101 - . alignment_id 1 ; Query AmOr102 ; Align 45965 142 111 ; Align 45854 180 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr98 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 146 -> 230 Target range: 18045 -> 17796 147 : IleLeuPheLeuLeuValProMetTyrPheProIleLeuAspMetIleAspAlaLeuAsn : 166 .!!||||||:!!! !|||||| !! !! !:!::!!:!! ! ! ! .!!! !||| PheLeuPheIleGlnValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsn 18045 : TTCTTGTTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAAT : 17988 167 : GlnThrArgSerArgGlnGlnLeuLeuArgValAsnTyrMetValPheAsnAlaAspAsp : 186 !|||! !||| !||| :!!:!!! !! ! !!|||.!.||| :!!! !! !!: IleThrProSerLeuGlnPheValIleProGlyTyrTyrPheVal---AspGluValGlu 17987 : ATAACGCCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTC---GACGAAGTAGAA : 17931 187 : TyrPhePheTyrValTyrLeuGlnLeuAlaTrpGlyAlaIleValIleValMetIleVal : 206 |||!:!!:!|||:!! |||!!. !.!!!! ! !:!::!!:!!|||:!!:!: ! TyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyr 17930 : TACTATTATTACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTAC : 17871 207 : IleThrValAspSerLeuTyrIleIleIleIleHisHisValCysGlyLeuPheAlaVal : 226 !.!! !|||!!! !|||!!::!!:!::!:!!.|||..!|||||||||||||||||| CysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaVal 17870 : TGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTG : 17811 227 : CysSerTyrGlu : 230 ..!.!!! ||| AlaGly***Glu 17810 : GCCGGGTGAGAA : 17797 vulgar: AmOr98 146 230 . KQ414772.1 18045 17796 - 104 M 35 105 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17797 18045 104 - . gene_id 1 ; sequence AmOr98 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17797 18045 . - . KQ414772.1 exonerate:protein2genome:local exon 17797 18045 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 17797 18045 104 - . alignment_id 1 ; Query AmOr98 ; Align 18046 147 105 ; Align 17941 183 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 680 Query range: 122 -> 389 Target range: 18084 -> 16519 123 : LeuAlaMetPheTyrPheIleAsnAlaTyrCysCysSerLeuLeuPheLeuGlnValPro : 142 |||! ! !.!!!:! :!:||||||||| !||||||!!!||||||:!!||||||||| LeuAspArgIlePheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValPro 18084 : CTCGATCGGATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCA : 18027 143 : TrpThrAlaArgLeuLeuTyrMetIleLysSerGlnAsnThrSerProProMetLeuTyr : 162 |||:!!.!!||||||:!! !! ! !|||!!!||||||! !!!!||| !:!!! !!:! TrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuGlnPhe 18026 : TGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCAATTC : 17967 163 : ValIleProGlyTyrTyrPheValAspAspAspArgAspTyrTyrTyrPheIleGlnLeu : 182 |||||||||||||||||||||||| |||!!: !!!:|||||||||!:!||| !||| ValIleProGlyTyrTyrPheVal---AspGluValGluTyrTyrTyrTyrIleIleLeu 17966 : GTCATACCCGGATATTACTTCGTC---GACGAAGTAGAATACTATTATTACATCATACTT : 17910 183 : HisMetSerLeuSerIleIleMetValAlaAsnValTyrValAlaTyrAspThrCysTyr : 202 ||| !!!! !!!!|||:!:!!:|||!.! |||||| !|||! !|||||| !!||| HisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCysAspThrSerTyr 17909 : CACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTAC : 17850 203 : MetValPheValGlnHisValCysGlyLeuLeuAlaValAla{Gl} >>>> Target : 217 ||||||.!.|||||||||..!|||||||||!!!|||||||||{||} 79 MetValLeuValGlnHisThrCysGlyLeuPheAlaValAla{Gl}++ 17849 : ATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCC{GG}gt............ : 17801 218 : Intron 1 >>>> {y}TyrArgPheLysHisAlaIleAspAspSerAlaSer<-><-> : 230 bp {|}||||||||||||:!!:!!||| !!!:..! !||| ++{y}TyrArgPheLysAsnSerIleArgGluAspAsnSerValLys 17800 : .............ag{A}TACCGCTTCAAGAATTCAATTCGCGAGGACAATAGCGTGAAG : 17684 231 : <->LysAsnSerGluGluLysIleLysGluThrCysLysLysIleArgSerSerIleGln : 248 ||| !!! !!!:.!. !! ||||||.!!! !|||!!. !!! !||||||||| GlyLysTyrPheAspHisTrpThrLysGluAlaTyrLysAsnAlaCysPheSerIleGln 17683 : GGGAAGTATTTCGACCACTGGACGAAAGAGGCGTACAAGAACGCGTGTTTCTCCATTCAG : 17624 249 : GlyHisGluGlyAlaIle{Ar} >>>> Target Intron 2 >>>> {g}TyrLeu : 257 ||||||:!! !!||||||{!.} 113 bp {!}!:!:!! GlyHisGlnArgAlaIle{As}++ ++{n}PheVal 17623 : GGACATCAACGTGCTATA{AA}gt.........................ag{C}TTTGTA : 17484 258 : LysLysIleGluAspThrHisValAsnLeuLeuPheIleSerLeuGlyLeuIleIleMet : 277 |||:!!|||||| ! !|||! !!..! !||||||! !!!!|||||||||:!:|||:!: LysGluIleGluArgGlyHisAspThrTyrLeuPheThrCysLeuGlyLeuValIleLeu 17483 : AAGGAAATTGAACGCGGCCATGACACGTACCTTTTCACCTGCTTAGGCTTGGTGATTCTA : 17424 278 : CysPheSerIleThrLeuLeuLys >>>> Target Intron 3 >>>> ValValT : 288 ||||||||||||||||||:!!||| 81 bp :!! !| CysPheSerIleThrLeuIleLys++ ++LeuSerT 17423 : TGCTTCAGTATTACTCTGATCAAGgt.........................agCTGAGTA : 17310 289 : hrMetAspTyrCysLeuAspPheTyrLysTyrSerSerPheLeuIleValGlnLeuMetH : 308 || !|||!:! !:!!|||||||||!:!|||!!!|||||| !:!: !|||||||||| hrSerAspPheAspIleAspPheTyrArgTyrCysSerPheThrLeuCysGlnLeuMetH 17309 : CGTCGGATTTCGACATAGACTTCTACAGATATTGCAGTTTTACGTTGTGTCAACTGATGC : 17250 309 : isLeuCysTyrValMetIleGlnGlyGlnPheValIleAspSerCysAsnGluIleTyrT : 328 |||||! ! !:!!|||:!!|||||||||||||||:!:|||||||||.!...!|||:!! isLeuPheValIleMetLeuGlnGlyGlnPheValLeuAspSerCysGluArgIleHisG 17249 : ACCTGTTCGTTATCATGCTTCAGGGACAGTTCGTGCTGGATTCGTGCGAGAGAATTCACG : 17190 329 : yrSer{Il} >>>> Target Intron 4 >>>> {e}TyrGluAlaSerTrpTyrA : 337 ! :!!{||} 402 bp {|}||||||:!!! !||||||! luAla{Il}++ ++{e}TyrGluSerLeuTrpTyrT 17189 : AGGCG{AT}gt.........................ag{A}TACGAATCATTATGGTACA : 16761 338 : snIleAsnProLysIleGlnAlaLeuTyrIleLeuAlaLeuArgArgSerLeuThrProP : 357 ..! !::! !!|||! !||||||||||||:!::!!||||||||||||!:!||||||||| hrSerSerSerLysThrGlnAlaLeuTyrValValAlaLeuArgArgAsnLeuThrProT 16760 : CAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCGTTACGAAGAAACCTAACACCTA : 16701 358 : roArgLeuThrAlaGlyGlyLeuIleGluLeuAsnMetGlnSerPheSerGlu >>>> : 375 !! !!||||||||||||||||||:!::!!||||||||||||||||||:!!||| hrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMetGlnSerPheAlaGlu++ 16700 : CCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATGCAAAGCTTCGCAGAGgt..... : 16645 376 : Target Intron 5 >>>> ValIleLysLeuSerIleSerTyrTyrThrValLeuAr : 387 83 bp |||:!!|||:!!|||:!!||||||||||||||||||!: ++ValValLysMetSerValSerTyrTyrThrValLeuLy 16644 : ....................agGTGGTAAAAATGTCCGTTTCCTATTATACGGTGTTGAA : 16528 388 : gSerThr : 389 !!!!||| sThrThr 16527 : GACAACG : 16520 vulgar: AmOr113 122 389 . KQ414772.1 18084 16519 - 680 M 48 144 G 1 0 M 45 135 S 0 2 5 0 2 I 0 75 3 0 2 S 1 1 M 12 36 G 0 9 M 25 75 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 30 90 5 0 2 I 0 77 3 0 2 M 44 132 S 0 2 5 0 2 I 0 398 3 0 2 S 1 1 M 44 132 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 16520 18084 680 - . gene_id 1 ; sequence AmOr113 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 17804 18084 . - . KQ414772.1 exonerate:protein2genome:local exon 17804 18084 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local splice5 17802 17803 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 17725 17803 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 17725 17726 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 17602 17724 . - . KQ414772.1 exonerate:protein2genome:local exon 17602 17724 . - . insertions 9 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 17600 17601 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 17489 17601 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 17489 17490 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 17398 17488 . - . KQ414772.1 exonerate:protein2genome:local exon 17398 17488 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 17396 17397 . - . intron_id 3 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 17317 17397 . - . intron_id 3 KQ414772.1 exonerate:protein2genome:local splice3 17317 17318 . - . intron_id 2 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 17183 17316 . - . KQ414772.1 exonerate:protein2genome:local exon 17183 17316 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 17181 17182 . - . intron_id 4 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 16781 17182 . - . intron_id 4 KQ414772.1 exonerate:protein2genome:local splice3 16781 16782 . - . intron_id 3 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 16648 16780 . - . KQ414772.1 exonerate:protein2genome:local exon 16648 16780 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 16646 16647 . - . intron_id 5 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 16565 16647 . - . intron_id 5 KQ414772.1 exonerate:protein2genome:local splice3 16565 16566 . - . intron_id 4 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 16520 16564 . - . KQ414772.1 exonerate:protein2genome:local exon 16520 16564 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 16520 18084 680 - . alignment_id 1 ; Query AmOr113 ; Align 18085 123 144 ; Align 17941 172 135 ; Align 17724 218 36 ; Align 17679 230 75 ; Align 17488 256 90 ; Align 17317 286 132 ; Align 16780 331 132 ; Align 16565 375 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 343 Query range: 254 -> 375 Target range: 37481 -> 36908 255 : ArgTyrLeuLysLysIleGluAspThrHisValAsnLeuLeuPheIleSerLeuGlyLeu : 274 ||||||:!!! !:!!|||||||||..!|||! !:::! !|||||||||! !:!!!.!||| ArgTyrIleMetGlnIleGluAspValHisAspSerTyrLeuPheIleIleValAlaLeu 37481 : AGATATATTATGCAGATCGAAGACGTTCACGACTCGTACCTGTTCATAATAGTCGCTTTA : 37424 275 : IleIleMetCysPheSerIleThrLeuLeuLys >>>> Target Intron 1 >>>> : 286 |||!!::!!! |||||||||||||||:!!!:! 77 bp IleMetLeuSerPheSerIleThrLeuValArg++ 37423 : ATCATGCTGTCGTTCAGTATCACTCTAGTCAGGgt......................... : 37386 287 : ValValThrMetAspTyrCysLeuAspPheTyrLysTyrSerSerPheLeuIleValG : 305 ..! !! !|||||| !|||:!!!!:||||||||||||!!!:!!||||||:!:|||| ++ThrSerMetMetAspProCysMetGluPheTyrLysTyrCysAlaPheLeuValValG 37385 : agACGTCCATGATGGACCCTTGCATGGAGTTCTACAAGTATTGCGCTTTCTTGGTGGTGC : 37254 306 : lnLeuMetHisLeuCysTyrValMetIleGlnGlyGlnPheValIleAspSerCysAsnG : 325 |||||:!:|||||| !!:!:!! |||||||||!!.||||||||| !||| !:!! lnLeuValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleLeuSerHisAspM 37253 : AACTGGTTCATTTGCTTTTCCTTTCTATCCAGGGACACTTTGTTATACTCTCGCATGACA : 37194 326 : luIleTyrTyrSer{Il} >>>> Target Intron 2 >>>> {e}TyrGluAlaS : 334 !! !||| !!!:!{||} 133 bp {|}|||...|||! etThrTyrAspAsn{Il}++ ++{e}TyrSerAlaL 37193 : TGACTTACGACAAC{AT}gt.........................ag{A}TATAGCGCAA : 37034 335 : erTrpTyrAsnIleAsnProLysIleGlnAlaLeuTyrIleLeuAlaLeuArgArgSerL : 354 .!|||||||||! !:::|||!:!! |||.!!||||||:!:||||||||||||||||||| ysTrpTyrAsnSerSerProArgThrGlnThrLeuTyrValLeuAlaLeuArgArgSerL 37033 : AATGGTACAACAGTTCGCCGAGAACGCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCT : 36974 355 : euThrProProArgLeuThrAlaGlyGlyLeuIleGluLeuAsnMetGlnSerPheSerG : 374 ||||||||||| !|||||||||||||||||||||...||||||:!!:!!!!!|||:!!| euThrProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaG 36973 : TGACTCCGCCATTGCTCACTGCGGGAGGACTGATTTCCTTGAATTTGGAGACTTTTGCCG : 36914 375 : luVal : 375 ||||| luVal 36913 : aggta : 36909 vulgar: AmOr113 254 375 . KQ414772.1 37481 36908 - 343 M 31 93 5 0 2 I 0 73 3 0 2 M 44 132 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 36909 37481 343 - . gene_id 2 ; sequence AmOr113 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 37389 37481 . - . KQ414772.1 exonerate:protein2genome:local exon 37389 37481 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 37387 37388 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 37312 37388 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 37312 37313 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 37178 37311 . - . KQ414772.1 exonerate:protein2genome:local exon 37178 37311 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 37176 37177 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 37045 37177 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 37045 37046 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 36909 37044 . - . KQ414772.1 exonerate:protein2genome:local exon 36909 37044 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 36909 37481 343 - . alignment_id 2 ; Query AmOr113 ; Align 37482 255 93 ; Align 37312 286 132 ; Align 37044 331 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 343 Query range: 254 -> 375 Target range: 36047 -> 35474 255 : ArgTyrLeuLysLysIleGluAspThrHisValAsnLeuLeuPheIleSerLeuGlyLeu : 274 ||||||:!!! !:!!|||||||||..!|||! !:::! !|||||||||! !:!!!.!||| ArgTyrIleMetGlnIleGluAspValHisAspSerTyrLeuPheIleIleValAlaLeu 36047 : AGATATATTATGCAGATCGAAGACGTTCACGACTCGTACCTGTTCATAATAGTCGCTTTA : 35990 275 : IleIleMetCysPheSerIleThrLeuLeuLys >>>> Target Intron 1 >>>> : 286 |||!!::!!! |||||||||||||||:!!!:! 77 bp IleMetLeuSerPheSerIleThrLeuValArg++ 35989 : ATCATGCTGTCGTTCAGTATCACTCTAGTCAGGgt......................... : 35952 287 : ValValThrMetAspTyrCysLeuAspPheTyrLysTyrSerSerPheLeuIleValG : 305 ..! !! !|||||| !|||:!!!!:||||||||||||!!!:!!||||||:!:|||| ++ThrSerMetMetAspProCysMetGluPheTyrLysTyrCysAlaPheLeuValValG 35951 : agACGTCCATGATGGACCCTTGCATGGAGTTCTACAAGTATTGCGCTTTCTTGGTGGTGC : 35820 306 : lnLeuMetHisLeuCysTyrValMetIleGlnGlyGlnPheValIleAspSerCysAsnG : 325 |||||:!:|||||| !!:!:!! |||||||||!!.||||||||| !||| !:!! lnLeuValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleLeuSerHisAspM 35819 : AACTGGTTCATTTGCTTTTCCTTTCTATCCAGGGACACTTTGTTATACTCTCGCATGACA : 35760 326 : luIleTyrTyrSer{Il} >>>> Target Intron 2 >>>> {e}TyrGluAlaS : 334 !! !||| !!!:!{||} 133 bp {|}|||...|||! etThrTyrAspAsn{Il}++ ++{e}TyrSerAlaL 35759 : TGACTTACGACAAC{AT}gt.........................ag{A}TATAGCGCAA : 35600 335 : erTrpTyrAsnIleAsnProLysIleGlnAlaLeuTyrIleLeuAlaLeuArgArgSerL : 354 .!|||||||||! !:::|||!:!! |||.!!||||||:!:||||||||||||||||||| ysTrpTyrAsnSerSerProArgThrGlnThrLeuTyrValLeuAlaLeuArgArgSerL 35599 : AATGGTACAACAGTTCGCCGAGAACGCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCT : 35540 355 : euThrProProArgLeuThrAlaGlyGlyLeuIleGluLeuAsnMetGlnSerPheSerG : 374 ||||||||||| !|||||||||||||||||||||...||||||:!!:!!!!!|||:!!| euThrProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaG 35539 : TGACTCCGCCATTGCTCACTGCGGGAGGACTGATTTCCTTGAATTTGGAGACTTTTGCCG : 35480 375 : luVal : 375 ||||| luVal 35479 : AGGTA : 35475 vulgar: AmOr113 254 375 . KQ414772.1 36047 35474 - 343 M 31 93 5 0 2 I 0 73 3 0 2 M 44 132 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 35475 36047 343 - . gene_id 3 ; sequence AmOr113 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 35955 36047 . - . KQ414772.1 exonerate:protein2genome:local exon 35955 36047 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 35953 35954 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 35878 35954 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 35878 35879 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 35744 35877 . - . KQ414772.1 exonerate:protein2genome:local exon 35744 35877 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 35742 35743 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 35611 35743 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 35611 35612 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 35475 35610 . - . KQ414772.1 exonerate:protein2genome:local exon 35475 35610 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 35475 36047 343 - . alignment_id 3 ; Query AmOr113 ; Align 36048 255 93 ; Align 35878 286 132 ; Align 35610 331 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 316 Query range: 255 -> 375 Target range: 28493 -> 27981 256 : TyrLeuLysLysIleGluAspThrHisValAsnLeuLeuPheIleSerLeuGlyLeuIle : 275 |||:!!! :::||||||... |||! !!..! !|||||||||:!!:!!|||:!!||| TyrIleThrGluIleGluGlnIleHisGlyThrTyrLeuPheIleAlaValGlyMetIle 28493 : TATATTAcagaaattgaacaaattcaCGGCACGTACCTCTTCATAGCAGTGGGAATGATT : 28436 276 : IleMetCysPheSerIleThrLeuLeuLys >>>> Target Intron 1 >>>> V : 286 !!:|||! |||||||||||||||:!!!:! 82 bp | MetMetSerPheSerIleThrLeuValArg++ ++V 28435 : ATGATGTCATTCAGTATCACGCTAGTCAGGgt.........................agG : 28321 287 : alValThrMetAspTyrCysLeuAspPheTyrLysTyrSerSerPheLeuIleValGlnL : 306 || !! !|||:!! !|||:!!!!:||||||||||||!!!.!!||||||:!:||||||| alSerMetMetAsnProCysValGluPheTyrLysTyrCysGlyPheLeuValValGlnL 28320 : TGTCCATGATGAACCCTTGCGTGGAGTTCTACAAGTATTGCGGTTTCTTGGTGGTGCAAC : 28261 307 : euMetHisLeuCysTyrValMetIleGlnGlyGlnPheValIleAspSerCysAsnGluI : 326 ||:!:|||||| !!:!:!! |||||||||!!.|||||||||! !||| !:!! !! euValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleValSerHisAspMetT 28260 : TGGTTCATTTGCTTTTCCTTTCTATCCAGGGACACTTCGTTATAGTCTCGCATGACATGA : 28201 327 : leTyrTyrSer{Il} >>>> Target Intron 2 >>>> {e}TyrGluAlaSerT : 335 !||| !!!:!{||} 70 bp {|}! !! |||!!!| hrTyrAspAsn{Il}++ ++{e}CysAlaAlaThrT 28200 : CTTACGATAAT{AT}gt.........................ag{A}TGCGCTGCAACAT : 28104 336 : rpTyrAsnIleAsnProLysIleGlnAlaLeuTyrIleLeuAlaLeuArgArgSerLeuT : 355 ||||||||! !!.. !!!:!! ||||||||||||!!:|||||||||||||||!:!|||| rpTyrAsnSerThrSerArgThrGlnAlaLeuTyrMetLeuAlaLeuArgArgAsnLeuT 28103 : GGTACAACAGTACATCTAGAACGCAAGCTTTGTACATGCTAGCTTTGAGAAGGAACTTGA : 28044 356 : hrProProArgLeuThrAlaGlyGlyLeuIleGluLeuAsnMetGlnSerPheSerGluV : 375 ||||||||! !:!!||||||||||||||||||...||||||:!!:!!!!!|||:!!|||| hrProProLeuIleThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGluV 28043 : CACCACCACTGATCACCGCCGGAGGACTGATTTCCTTGAATTTGGAGACCTTCGCGGAGG : 27984 376 : al : 375 || al 27983 : TA : 27982 vulgar: AmOr113 255 375 . KQ414772.1 28493 27981 - 316 M 30 90 5 0 2 I 0 78 3 0 2 M 44 132 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 27982 28493 316 - . gene_id 4 ; sequence AmOr113 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 28404 28493 . - . KQ414772.1 exonerate:protein2genome:local exon 28404 28493 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 28402 28403 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 28322 28403 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 28322 28323 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 28188 28321 . - . KQ414772.1 exonerate:protein2genome:local exon 28188 28321 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 28186 28187 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 28118 28187 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 28118 28119 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 27982 28117 . - . KQ414772.1 exonerate:protein2genome:local exon 27982 28117 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 27982 28493 316 - . alignment_id 4 ; Query AmOr113 ; Align 28494 256 90 ; Align 28322 286 132 ; Align 28117 331 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 313 Query range: 255 -> 375 Target range: 41802 -> 41245 256 : TyrLeuLysLysIleGluAspThrHisValAsnLeuLeuPheIleSerLeuGlyLeuIle : 275 |||:!!:!!!:!||||||!!:! !||| !!..! !||||||||| !:!! !:!!:!! TyrIleGluArgIleGluGluMetHisHisThrTyrLeuPheIleValValLeuValVal 41802 : TACATTGAGAGGATTGAAGAAATGCACCATACATACCTGTTCATAGTGGTGCTAGTGGTT : 41745 276 : IleMetCysPheSerIleThrLeuLeuLys >>>> Target Intron 1 >>>> V : 286 :!!:!!...||||||||||||||||||!:! 80 bp ! ValLeuAlaPheSerIleThrLeuLeuArg++ ++A 41744 : GTACTGGCGTTCAGTATCACCCTACTAAGGgt.........................agG : 41632 287 : alValThrMetAspTyrCysLeuAspPheTyrLysTyrSerSerPheLeuIleValGlnL : 306 .! !! !|||||| !|||:!!!!:||||||||| !!!!! !||||||:!:||||||| laSerMetMetAspProCysValGluPheTyrLysAspCysValPheLeuValValGlnL 41631 : CGTCCATGATGGACCCTTGCGTGGAGTTCTACAAAGATTGCGTATTCTTGGTGGTGCAGC : 41572 307 : euMetHisLeuCysTyrValMetIleGlnGlyGlnPheValIleAspSerCysAsnGluI : 326 ||:!:|||||| !!:!:!! |||||||||!!.||||||! !! !||| ::::::: euValHisLeuLeuPheLeuAlaIleGlnGlyHisPheValThrValSerHisAspGlnV 41571 : TCGTTCATTTGCTTTTCCTTGCCATACAGGGACACTTCGTTACAGTCTCGCatgaccagg : 41512 327 : leTyrTyrSer{Il} >>>> Target Intron 2 >>>> {e}TyrGluAlaSerT : 335 ::||| |||{!!} 117 bp {:}|||!!:||| !| alTyrAspSer{Me}++ ++{t}TyrAspAlaValT 41511 : tttacgatagt{AT}gt.........................ag{G}TACGATGCAGTAT : 41368 336 : rpTyrAsnIleAsnProLysIleGlnAlaLeuTyrIleLeuAlaLeuArgArgSerLeuT : 355 ||||||||! !!..|||!:!! |||.!!||||||!!:|||||||||||||||!!!|||| rpTyrAsnSerThrProArgThrGlnThrLeuTyrMetLeuAlaLeuArgArgThrLeuT 41367 : GGTACAACAGTACGCCAAGAACGCAAACTTTGTACATGCTAGCTTTGAGGAGGACTTTAA : 41308 356 : hrProProArgLeuThrAlaGlyGlyLeuIleGluLeuAsnMetGlnSerPheSerGluV : 375 ||||||||! !|||||||||||||||||||||...||||||:::::::::||||||:!!| hrProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheSerLysV 41307 : CTCCACCACTGCTCACTGCAGGAGGACtgatttcgttgaatttggaaactttttcGAAGG : 41248 376 : al : 375 || al 41247 : TA : 41246 vulgar: AmOr113 255 375 . KQ414772.1 41802 41245 - 313 M 30 90 5 0 2 I 0 76 3 0 2 M 44 132 S 0 2 5 0 2 I 0 113 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 41246 41802 313 - . gene_id 5 ; sequence AmOr113 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 41713 41802 . - . KQ414772.1 exonerate:protein2genome:local exon 41713 41802 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 41711 41712 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 41633 41712 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 41633 41634 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 41499 41632 . - . KQ414772.1 exonerate:protein2genome:local exon 41499 41632 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 41497 41498 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 41382 41498 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 41382 41383 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 41246 41381 . - . KQ414772.1 exonerate:protein2genome:local exon 41246 41381 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 41246 41802 313 - . alignment_id 5 ; Query AmOr113 ; Align 41803 256 90 ; Align 41633 286 132 ; Align 41381 331 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 297 Query range: 254 -> 388 Target range: 20050 -> 19369 255 : ArgTyrLeuLysLysIleGluAspThrHisValAsnLeuLeuPheIleSerLeuGlyLeu : 274 |||||||||||| ! |||||||||!:!||| !! !! !||||||||||||:!!|||:!! ArgTyrLeuLysHisIleGluAspSerHisArgIleTyrLeuPheIleSerMetGlyMet 20050 : AGATATCTGAAACATATCGAGGACAGCCATCGTATTTACCTGTTCATCTCGATGGGAATG : 19993 275 : IleIleMetCysPheSerIleThrLeuLeuLysValValThrMetAspTyrCysLeuAsp : 294 :!:!!:!!:..!.!!|||:!::!!||||||! ||| ... :!! LeuMetIleAlaIleSerValSerLeuLeuThrValGluTyrPheLeuValThrValPhe 19992 : CTGATGATAGCTATCAGCGTGTCTTTGTTAAcggtagaatattttttagtcACAGTCTTc : 19933 295 : >>>> Target Intron 1 >>>> PheTyrLysTyrSerSerPheLeuIleValG : 305 81 bp ! !:!!.!!!!!|||!!!:!!! !| -+ ++LysValValHisGlyThrPhePheValGlyG 19932 : tt.........................agAAGGTTGTGCACGGAACGTTTTTCGTCGGCC : 19819 306 : lnLeuMetHisLeuCysTyrValMetIleGlnGlyGlnPheValIleAspSerCysAsnG : 325 || !.!.|||:!!! !!:!:!!! :!!||||||||||||||||||:!!:!!! !:!!| lnAlaPheHisValPhePheLeuAsnValGlnGlyGlnPheValIleAsnAlaPheAspG 19818 : AAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGGACAATTTGTGATAAACGCATTCGACG : 19759 326 : luIleTyrTyrSer{Il} >>>> Target Intron 2 >>>> {e}TyrGluAlaS : 334 ||:!:||| !!!.!{||} 113 bp {|}||||||:!!. luLeuTyrAspLys{Il}++ ++{e}TyrGluSerG 19758 : AACTGTACGACAAG{AT}gt.........................ag{A}TACGAATCGC : 19619 335 : erTrpTyrAsnIleAsnProLysIleGlnAlaLeuTyrIleLeuAlaLeuArgArgSerL : 354 .!|||||||||.!!!.!|||!:!! !||||||||||||:!!||||||||||||!!!!!!| lnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeuArgSerCysL 19618 : AGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTGAGAAGCTGCC : 19559 355 : euThrProProArgLeuThrAlaGlyGlyLeuIleGluLeuAsnMetGlnSerPheSerG : 374 ||!.!||||||! !|||||||||||||||:!!! !||||||:!:!:!||||||:!!| euAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSerPheAlaG 19558 : TAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATCGTTCGCAG : 19499 375 : lu >>>> Target Intron 3 >>>> ValIleLysLeuSerIleSerTyrTyrTh : 384 || 85 bp :!!|||||| !|||:!!||||||||||| lu++ ++IleIleLysAlaSerValSerTyrTyrTh 19498 : AGgt.........................agATCATCAAAGCATCTGTTTCCTACTACAC : 19384 385 : rValLeuArgSer : 388 ||||:!!!:!!!! rValMetGlnThr 19383 : GGTGATGCAGACC : 19370 vulgar: AmOr113 254 388 . KQ414772.1 20050 19369 - 297 M 40 120 5 0 2 I 0 77 3 0 2 M 35 105 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 44 132 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 19370 20050 297 - . gene_id 6 ; sequence AmOr113 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 19931 20050 . - . KQ414772.1 exonerate:protein2genome:local exon 19931 20050 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 19929 19930 . - . intron_id 1 ; splice_site "tt" KQ414772.1 exonerate:protein2genome:local intron 19850 19930 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 19850 19851 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 19743 19849 . - . KQ414772.1 exonerate:protein2genome:local exon 19743 19849 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 19741 19742 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 19630 19742 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 19630 19631 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 19497 19629 . - . KQ414772.1 exonerate:protein2genome:local exon 19497 19629 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 19495 19496 . - . intron_id 3 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 19412 19496 . - . intron_id 3 KQ414772.1 exonerate:protein2genome:local splice3 19412 19413 . - . intron_id 2 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 19370 19411 . - . KQ414772.1 exonerate:protein2genome:local exon 19370 19411 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 19370 20050 297 - . alignment_id 6 ; Query AmOr113 ; Align 20051 255 120 ; Align 19850 295 105 ; Align 19629 331 132 ; Align 19412 375 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 260 Query range: 255 -> 362 Target range: 23613 -> 23140 256 : TyrLeuLysLysIleGluAspThrHisValAsnLeuLeuPheIleSerLeuGlyLeuIle : 275 |||:!!! !:!!||||||.!...!|||! !!..! !|||||||||:!!:!!|||:!!:!! TyrIleThrGluIleGluGlnValHisGlyThrTyrLeuPheIleAlaValGlyMetVal 23613 : TATATTACAGAAATTGAACAAGTTCATGGCACGTACCTCTTCATAGCAGTGGGAATGGTT : 23556 276 : IleMetCysPheSerIleThrLeuLeuLys >>>> Target Intron 1 >>>> V : 286 !!:|||! |||||||||||||||:!!!:! 82 bp | MetMetSerPheSerIleThrLeuValArg++ ++V 23555 : ATGATGTCATTCAGTATCACGTTAGTCAGGgt.........................agG : 23441 287 : alValThrMetAspTyrCysLeuAspPheTyrLysTyrSerSerPheLeuIleValGlnL : 306 || !||||||:!! !|||:!!!!:||||||||||||.!!.!!||||||:!:||||||| alSerThrMetAsnProCysValGluPheTyrLysTyrGlyGlyPheLeuValValGlnL 23440 : TATCCACGATGAACCCTTGCGTGGAGTTCTACAAGTATGGTGGTTTCTTGGTGGTGCAAC : 23381 307 : euMetHisLeuCysTyrValMetIleGlnGlyGlnPheValIleAsp{Se} >>>> Ta : 322 ||:!:|||||| !!:!:!! |||||||||!!.|||||||||! !{||} euValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleVal{Se}+- 23380 : TGGTTCATTTGCTTTTCCTTTCTATCCAGGGACACTTCGTTATAGTC{TC}gc....... : 23329 323 : rget Intron 2 >>>> {r}CysAsnGluIleTyrTyrSerIleTyrGluAlaSerT : 335 70 bp {|} !.!...!:!: ! ! !!! !|||...|||!!!| +-{r}ValGlnArgLeuLeuValArgArgTyrSerAlaThrT 23328 : ..................aa{C}GTTCAGAGGTTGCTCGTTCGCAGATACAGCGCTACAT : 23224 336 : rpTyrAsnIleAsnProLysIleGlnAlaLeuTyrIleLeuAlaLeuArgArgSerLeuT : 355 |||||||| !!..||||||:!:||||||||||||:!:|||||||||||||||!:!|||| rpTyrAsnGlyThrProLysValGlnAlaLeuTyrValLeuAlaLeuArgArgAsnLeuT 23223 : GGTACAACGGTACACCGAAAGTGCAAGCTTTGTACGTGCTAGCTTTGAGAAGGAACTTGA : 23164 356 : hrProProArgLeuThrAlaGly : 362 ||||||||! !:!!||||||||| hrProProLeuIleThrAlaGly 23163 : CTCCACCGCTGATCACTGCCGGA : 23141 vulgar: AmOr113 255 362 . KQ414772.1 23613 23140 - 260 M 30 90 5 0 2 I 0 78 3 0 2 M 36 108 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 23141 23613 260 - . gene_id 7 ; sequence AmOr113 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 23524 23613 . - . KQ414772.1 exonerate:protein2genome:local exon 23524 23613 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 23522 23523 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 23442 23523 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 23442 23443 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 23332 23441 . - . KQ414772.1 exonerate:protein2genome:local exon 23332 23441 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 23330 23331 . - . intron_id 2 ; splice_site "GC" KQ414772.1 exonerate:protein2genome:local intron 23262 23331 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 23262 23263 . - . intron_id 1 ; splice_site "AA" KQ414772.1 exonerate:protein2genome:local cds 23141 23261 . - . KQ414772.1 exonerate:protein2genome:local exon 23141 23261 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 23141 23613 260 - . alignment_id 7 ; Query AmOr113 ; Align 23614 256 90 ; Align 23442 286 108 ; Align 23261 323 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 226 Query range: 285 -> 387 Target range: 45167 -> 44733 286 : ValValThrMetAspTyrCysLeuAspPheTyrLysTyrSerSerPheLeuIleValGln : 305 :!!!.!..!! !!: ! !!!!!|||.!.! !!:!! !!!!!!|||||||||!.!||| IleAlaValThrGluIleSerPheAspIleCysArgLeuCysThrPheLeuIleAlaGln 45167 : ATAGCCGTGACAGAAATTAGCTTCGATATATGCAGATTGTGCACGTTCCTGATCGCACAA : 45110 306 : LeuMetHisLeuCysTyrValMetIleGlnGlyGlnPheValIleAspSerCysAsnGlu : 325 !:!:|||:!! !:!:!!! !||||||||||||||||||||||||||| :!!!!: ThrValHisMetLeuPheLeuThrIleGlnGlyGlnPheValIleAspSer---HisAsp 45109 : ACTGTACACATGCTGTTTTTGACGATTCAGGGACAGTTCGTGATCGATTCG---CATGAT : 45053 326 : IleTyrTyrSer{Il} >>>> Target Intron 1 >>>> {e}TyrGluAlaSer : 334 ! ! |||!:!{:!} 33 bp {!}|||||||||! ! ThrValTyrAsn{Va}++ ++{l}TyrGluAlaIle 45052 : ACAGTGTACAAT{GT}gt.........................ag{A}TACGAGGCAATT : 44993 335 : TrpTyrAsnIleAsnProLysIleGlnAlaLeuTyrIleLeuAlaLeuArgArgSerLeu : 354 ||||||!!.!!: ||||||:!!||| !||| !!:!!:!!|||||||||!:!|||||| TrpTyrLysMetProProLysLeuGlnLeuLeuAspValValAlaLeuArgLysSerLeu 44992 : TGGTATAAGATGCCACCTAAACTTCAGTTGCTAGACGTTGTAGCGCTTAGAAAAAGCCTA : 44933 355 : ThrProProArgLeuThrAlaGlyGlyLeuIleGluLeuAsnMetGlnSerPheSerGlu : 374 |||||||||! !||||||||||||||||||!!:..!|||:!!:!!.!.||||||:!!:!! ThrProProIleLeuThrAlaGlyGlyLeuMetArgLeuAspLeuAsnSerPheAlaGln 44932 : ACTCCTCCTATACTGACGGCGGGAGGGTTGATGCGGTTAGATTTGAATTCTTTCGCACAG : 44873 375 : >>>> Target Intron 2 >>>> ValIleLysLeuSerIleSerTyrTyrThrV : 385 98 bp ::::!:||| !!!!:!!||||||||||||! ++ ++LeuLeuLysAlaCysValSerTyrTyrThrA 44872 : gt.........................agctgCTGAAAGCTTGCGTCTCGTATTATACGG : 44742 386 : alLeuArg : 387 .!|||||| laLeuArg 44741 : CACTGCGA : 44734 vulgar: AmOr113 285 387 . KQ414772.1 45167 44733 - 226 M 37 111 G 1 0 M 6 18 S 0 2 5 0 2 I 0 29 3 0 2 S 1 1 M 44 132 5 0 2 I 0 94 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 44734 45167 226 - . gene_id 8 ; sequence AmOr113 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 45037 45167 . - . KQ414772.1 exonerate:protein2genome:local exon 45037 45167 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local splice5 45035 45036 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 45004 45036 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 45004 45005 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 44871 45003 . - . KQ414772.1 exonerate:protein2genome:local exon 44871 45003 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 44869 44870 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 44773 44870 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 44773 44774 . - . intron_id 1 ; splice_site "ag" KQ414772.1 exonerate:protein2genome:local cds 44734 44772 . - . KQ414772.1 exonerate:protein2genome:local exon 44734 44772 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 44734 45167 226 - . alignment_id 8 ; Query AmOr113 ; Align 45168 286 111 ; Align 45057 324 18 ; Align 45003 331 132 ; Align 44773 375 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 189 Query range: 120 -> 217 Target range: 14181 -> 13893 121 : SerPheLeuAlaMetPheTyrPheIleAsnAlaTyrCysCysSerLeuLeuPheLeuGln : 140 !!!!:!:!!!.!! !:!! .!.:!:|||||| ! !||| !:!!||||||:!! ThrTyrIleValLysTyrSerIleValAsnAlaIleValCysValIleLeuPheValThr 14181 : ACGTACATTGTCAAATATTCGATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGACC : 14124 141 : ValProTrpThrAlaArgLeuLeuTyrMetIleLysSerGlnAsnThrSerProProMet : 160 ..!||| !||| !!!.!:!!||| !!!!::!! ! !!:!!||| !|||! ! !:!: ThrProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspVal 14123 : ACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTA : 14064 161 : LeuTyrValIleProGlyTyrTyrPheValAspAspAspArgAspTyrTyrTyrPheIle : 180 !|||:!! !|||!.!|||||||||..!|||!!: !!!:! ||| !! !:!||| AlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLys---TyrAspValTyrIle 14063 : GCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAG---TACGACGTGTACATA : 14007 181 : GlnLeuHisMetSerLeuSerIleIleMetValAlaAsnValTyrValAlaTyrAspThr : 200 !||||||:!!! ! !|||:!!:!!||| ! !!||||||||||||! !|||||| IleThrHisMetAlaSerValIleLeuValValPheTyrValTyrValAlaCysAspThr 14006 : ATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACC : 13947 201 : CysTyrMetValPheValGlnHisValCysGlyLeuLeuAlaValAlaGly : 217 !!|||!!: ! !!|||||||||! !||||||||||||||||||:!!||| SerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly 13946 : AGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGg : 13894 vulgar: AmOr113 120 217 . KQ414772.1 14181 13893 - 189 M 54 162 G 1 0 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13894 14181 189 - . gene_id 9 ; sequence AmOr113 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13894 14181 . - . KQ414772.1 exonerate:protein2genome:local exon 13894 14181 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 13894 14181 189 - . alignment_id 9 ; Query AmOr113 ; Align 14182 121 162 ; Align 14020 176 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 173 Query range: 122 -> 217 Target range: 42754 -> 42472 123 : LeuAlaMetPheTyrPheIleAsnAlaTyrCysCysSerLeuLeuPheLeuGlnValPro : 142 ::::::......::: :!!!.!!.! ||||||! ! !:!!|||:!!...!.!||| ValSerPheIlePheThrValThrGlyIleCysCysPheThrMetPheIleSerAlaPro 42754 : gtttctttcattttcacagTAACTGGAATATGTTGCTTCACAATGTTTATCTCTGCGCCT : 42697 143 : TrpThrAlaArgLeuLeuTyrMetIleLysSerGlnAsnThrSerProProMetLeuTyr : 162 !::! ! !!!.!:!!! ! !!:!:!!: !|||:!!||| !|||! ! !:!! !!:! TyrIleProHisValTyrAspValMetLeuSerLysAsnGluSerArgLysLeuGlyPhe 42696 : TATATACCGCATGTATATGATGTTATGTTATCGAAAAACGAGTCACGAAAGTTGGGTTTC : 42637 163 : ValIleProGlyTyrTyrPheValAspAspAspArgAspTyrTyrTyrPheIleGlnLeu : 182 :!! !|||!.!|||||| !||||||.!.|||!:! |||||||||!:!||| ! ! IleTyrProAlaTyrTyrGlyValAspGlnAspLys---TyrTyrTyrTyrIleIleAla 42636 : ATTTACCCTGCCTATTATGGCGTTGATCAAGACAAG---TATTATTACTATATAATAGCT : 42580 183 : HisMetSerLeuSerIleIleMetValAlaAsnValTyrValAlaTyrAspThrCysTyr : 202 ||||||!!!! !.!! !:!!:!!||| ! !..!!:!:!!:!!! !|||||| !||| HisMetThrSerGlyGlyLeuValValPhePheThrPheIleSerCysAspThrIleTyr 42579 : CACATGACATCTGGGGGCTTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTAC : 42520 203 : MetValPheValGlnHisValCysGlyLeuLeuAlaValAlaGly : 217 ||| !.!!|||||||||!.!|||||||||||| !:!!:!!||| MetAsnIleValGlnHisAlaCysGlyLeuLeuLeuIleSerGly 42519 : ATGAATATCGTGCAACACGCGTGCGGATTGTTGTTGATTTCTGGG : 42473 vulgar: AmOr113 122 217 . KQ414772.1 42754 42472 - 173 M 52 156 G 1 0 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42473 42754 173 - . gene_id 10 ; sequence AmOr113 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42473 42754 . - . KQ414772.1 exonerate:protein2genome:local exon 42473 42754 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 42473 42754 173 - . alignment_id 10 ; Query AmOr113 ; Align 42755 123 156 ; Align 42599 176 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 172 Query range: 123 -> 217 Target range: 38048 -> 37769 124 : AlaMetPheTyrPheIleAsnAlaTyrCysCysSerLeuLeuPheLeuGlnValProTrp : 143 :!!:!!!:!!:! :!!|||!.! ! !|||! !:!!:!!||| !..!||| !! SerLeuTyrPheThrValAsnGlyLeuPheCysTyrValIlePheThrSerValAlaIle 38048 : TCTCTGTATTTCACAGTAAACGGACTGTTTTGCTACGTTATATTCACCTCAGTGGCGATT : 37991 144 : ThrAlaArgLeuLeuTyrMetIleLysSerGlnAsnThrSerProProMetLeuTyrVal : 163 ||| !!|||:!!||| !!:!:|||..! !!:!!||| !|||! ! !:!: !!:!:!! ThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValAspPheIle 37990 : ACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTCATT : 37931 164 : IleProGlyTyrTyrPheValAspAspAspArgAspTyrTyrTyrPheIleGlnLeuHis : 183 !|||!.!|||||| !:!!|||!!:!!: !!::!!||||||.!!:!:..! !||| TyrProAlaTyrTyrGlyLeuAspGluGlu---GluHisTyrTyrIleLeuMetGlyHis 37930 : TATCCTGCATACTACGGTCTCGACGAGGAG---GAACATTATTACATTCTGATGGGTCAC : 37874 184 : MetSerLeuSerIleIleMetValAlaAsnValTyrValAlaTyrAspThrCysTyrMet : 203 ||| !! ! !|||! !:!:||| ! !||||||:!!:!!! !|||||| !|||||| MetLeuCysValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMet 37873 : ATGCTCTGCGTGATAACTGTAGTGTTTTTCGTGTACATCTCCTGTGACACGATCTACATG : 37814 204 : ValPheValGlnHisValCysGlyLeuLeuAlaValAlaGly : 217 !.!!|||||||||!.!|||||||||||| !|||:!!||| SerIleValGlnHisAlaCysGlyLeuLeuAsnValSerGly 37813 : AGCATCGTTCAACACGCGTGCGGATTACTGAACGTCTCTGGG : 37770 vulgar: AmOr113 123 217 . KQ414772.1 38048 37769 - 172 M 50 150 G 1 0 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37770 38048 172 - . gene_id 11 ; sequence AmOr113 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37770 38048 . - . KQ414772.1 exonerate:protein2genome:local exon 37770 38048 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 37770 38048 172 - . alignment_id 11 ; Query AmOr113 ; Align 38049 124 150 ; Align 37899 175 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 165 Query range: 121 -> 217 Target range: 29640 -> 29355 122 : PheLeuAlaMetPheTyrPheIleAsnAlaTyrCysCysSerLeuLeuPheLeuGlnVal : 141 |||...::: ::! !|||!.! !! !|||! !:!!:!!||| !..!||| PhePheSerSerArgPheThrAlaAsnGlyIlePheCysTyrValIlePheThrSerVal 29640 : tttttttcttcacgttTCACAGCAAATGGAATCTTCTGCTACGTTATATTCACCTCAGTG : 29583 142 : ProTrpThrAlaArgLeuLeuTyrMetIleLysSerGlnAsnThrSerProProMetLeu : 161 !! ||| !!|||:!!||| !!:!:|||..! !!:!!||| !|||! ! !:!! ! AlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValGly 29582 : GCGATAACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTGGGC : 29523 162 : TyrValIleProGlyTyrTyrPheValAspAspAspArgAspTyrTyrTyrPheIleGln : 181 !:!:!! !|||!.!|||||| !:!!|||!!:!!: !!::!!||||||!:!:!:..! PheIleTyrProAlaTyrTyrGlyLeuAspGluGlu---GluHisTyrTyrTyrLeuMet 29522 : TTCATTTATCCTGCATACTACGGTCTTGACGAAGAG---GAGCATTACTACTATCTGATG : 29466 182 : LeuHisMetSerLeuSerIleIleMetValAlaAsnValTyrValAlaTyrAspThrCys : 201 !|||||| !! ! !|||! !:!:||| ! !||||||:!!:!!! !|||||| ! GlyHisMetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThrIle 29465 : GGTCACATGCTTTCCGTGATAACCGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATC : 29406 202 : TyrMetValPheValGlnHisValCysGlyLeuLeuAlaValAlaGly : 217 |||||| ! !!|||||||||!.!|||||||||||| !|||:!!||| TyrMetAsnValValGlnHisAlaCysGlyLeuLeuAsnValSerGly 29405 : TATATGAATGTCGTGCAACACGCGTGTGGATTATTGAACGTCTCTGGG : 29356 vulgar: AmOr113 121 217 . KQ414772.1 29640 29355 - 165 M 52 156 G 1 0 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29356 29640 165 - . gene_id 12 ; sequence AmOr113 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29356 29640 . - . KQ414772.1 exonerate:protein2genome:local exon 29356 29640 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 29356 29640 165 - . alignment_id 12 ; Query AmOr113 ; Align 29641 122 156 ; Align 29485 175 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 162 Query range: 120 -> 217 Target range: 24464 -> 24176 121 : SerPheLeuAlaMetPheTyrPheIleAsnAlaTyrCysCysSerLeuLeuPheLeuGln : 140 :::||| ::::::::! ! !|||!.! !! !|||! !:!!|||||| ! ! ThrPheSerSerLeuTyrValAlaAlaAsnGlyIlePheCysTyrValLeuPheThrAla 24464 : acattttcttctctataTGTCGCAGCAAATGGAATCTTCTGCTACGTTCTCTTCACCGCA : 24407 141 : ValProTrpThrAlaArgLeuLeuTyrMetIleLysSerGlnAsnThrSerProProMet : 160 ||| !! ||| !!|||:!!||| !!:!:|||..! !!:!!||| !|||! ! !:!! ValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyVal 24406 : GTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTG : 24347 161 : LeuTyrValIleProGlyTyrTyrPheValAspAspAspArgAspTyrTyrTyrPheIle : 180 !!:!:!! !|||!.! !!||| !||||||!!:!!: !!::!!||||||!:!:!: GlyPheIleTyrProAlaAsnTyrGlyValAspGluGlu---GluHisTyrTyrTyrLeu 24346 : GGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAG---GAGCATTACTACTATCTG : 24290 181 : GlnLeuHisMetSerLeuSerIleIleMetValAlaAsnValTyrValAlaTyrAspThr : 200 ..! !|||||| !! ! !|||! !:!:||| ! !||||||:!!:!!! !|||||| MetGlyHisMetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThr 24289 : ATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGTGACACG : 24230 201 : CysTyrMetValPheValGlnHisValCysGlyLeuLeuAlaValAlaGly : 217 !|||||| !.!!|||||||||!.!|||||||||||| !:!!:!!||| IleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSerGly 24229 : ATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCTGGG : 24177 vulgar: AmOr113 120 217 . KQ414772.1 24464 24176 - 162 M 53 159 G 1 0 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24177 24464 162 - . gene_id 13 ; sequence AmOr113 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24177 24464 . - . KQ414772.1 exonerate:protein2genome:local exon 24177 24464 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 24177 24464 162 - . alignment_id 13 ; Query AmOr113 ; Align 24465 121 159 ; Align 24306 175 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 154 Query range: 330 -> 375 Target range: 31898 -> 31763 331 : TyrGluAlaSerTrpTyrAsnIleAsnProLysIleGlnAlaLeuTyrIleLeuAlaLeu : 350 |||...|||!!!||||||!!.! !!..|||!:!! |||.!!|||||| ||||||||| TyrSerAlaThrTrpTyrLysSerThrProArgThrGlnThrLeuTyrGlyLeuAlaLeu 31898 : TACAGTGCAACGTGGTACAAGAGTACGCCGAGAACGCAAACTTTGTACGGGCTAGCTTTG : 31841 351 : ArgArgSerLeuThrProProArgLeuThrAlaGlyGlyLeuIleGluLeuAsnMetGln : 370 ||||||.!!|||||||||||| !|||||||||||||||||||||..!||||||:!!:!! ArgArgGlyLeuThrProProValLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGlu 31840 : AGAAGAGGCTTGACTCCACCGGTGCTCACAGCTGGAGGATTGATTTCGTTGAATCTGGAG : 31781 371 : SerPheSerGluVal : 375 !!!|||:!!|||||| ThrPheAlaGluVal 31780 : ACTTTTGCTGAGGTG : 31764 vulgar: AmOr113 330 375 . KQ414772.1 31898 31763 - 154 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 31764 31898 154 - . gene_id 14 ; sequence AmOr113 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 31764 31898 . - . KQ414772.1 exonerate:protein2genome:local exon 31764 31898 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 31764 31898 154 - . alignment_id 14 ; Query AmOr113 ; Align 31899 331 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 154 Query range: 325 -> 379 Target range: 12658 -> 12496 326 : IleTyrTyrSerIleTyrGluAlaSerTrpTyrAsnIleAsnProLysIleGlnAlaLeu : 345 :!!:!!!:!|||! !|||...|||! !|||||||||! !:!! !!:!! |||:!!||| ValHisPheSerArgTyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeu 12658 : GTCCATTTTTCTAGATACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTG : 12601 346 : TyrIleLeuAlaLeuArgArgSerLeuThrProProArgLeuThrAlaGlyGlyLeuIle : 365 !:!:!!||||||||||||!.!!!!|||:!! !!|||!:!:!!|||||||||||||||||| PheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIle 12600 : TTTGTATTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATT : 12541 366 : GluLeuAsnMetGlnSerPheSerGluValIleLysLeuSer : 379 !:!!|||:!!||||||||||||||||||! !!..! !||| ThrMetAsnLeuGlnSerPheSerGluValThrSerSerSer 12540 : ACAATGAACTTGCAAAGTTTCTCAGAGGTAACAAGTTCATCG : 12497 vulgar: AmOr113 325 379 . KQ414772.1 12658 12496 - 154 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 12497 12658 154 - . gene_id 15 ; sequence AmOr113 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 12497 12658 . - . KQ414772.1 exonerate:protein2genome:local exon 12497 12658 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 12497 12658 154 - . alignment_id 15 ; Query AmOr113 ; Align 12659 326 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 151 Query range: 126 -> 217 Target range: 33682 -> 33412 127 : TyrPheIleAsnAlaTyrCysCysSerLeuLeuPheLeuGlnValProTrpThrAlaArg : 146 ::: !|||!.! ! !|||! !:!!:!!||| !..!!.!|||!::! ! !!!.! PheThrAlaAsnGlyValPheCysTyrIleMetPheSerSerAlaProPheIleProHis 33682 : ttcacagCAAACGGAGTGTTTTGCTACATCATGTTCAGCTCGGCGCCTTTTATACCGCAT : 33625 147 : LeuLeuTyrMetIleLysSerGlnAsnThrSerProProMetLeuTyrValIleProGly : 166 !!!:!! !!:!: !|||:!!||| !|||! ! !:!: !! :!! !|||!.! PheIleAspValAlaLeuSerLysAsnGluSerArgLysLeuSerLeuMetTyrProAla 33624 : TTTATCGATGTTGCGTTGTCGAAAAACGAGTCACGAAAATTAAGTTTGATGTACCCTGCC : 33565 167 : TyrTyrPheValAspAspAspArgAspTyrTyrTyrPheIleGlnLeuHisMetSerLeu : 186 |||||| !:!!|||.!.|||::: |||||||||::::::... !||||||! ! ! TyrTyrGlyIleAspGlnAspLys---TyrTyrTyrTyrLeuMetAlaHisMetMetSer 33564 : TATTACGGCATTGACCAGGacaag---tattattattatctaatgGCTCACATGATGAGC : 33508 187 : SerIleIleMetValAlaAsnValTyrValAlaTyrAspThrCysTyrMetValPheVal : 206 :!! ! !||| ! !|||!:!:!!:!!! !|||||| !|||||| !.!!||| AlaGlyAlaAlaValPhePheValPheMetSerCysAspThrIleTyrMetAsnIleVal 33507 : GCAGGGGCAGCGGTGTTTTTCGTATTTATGTCCTGCGACACGATTTATATGAATATCGTT : 33448 207 : GlnHisValCysGlyLeuLeuAlaValAlaGly : 217 ||||||!.!|||||||||||| !:!!:!!||| GlnHisAlaCysGlyLeuLeuPheIleSerGly 33447 : CAACACGCGTGCGGATTGTTGTTCATTTCCGGG : 33413 vulgar: AmOr113 126 217 . KQ414772.1 33682 33412 - 151 M 48 144 G 1 0 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33413 33682 151 - . gene_id 16 ; sequence AmOr113 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33413 33682 . - . KQ414772.1 exonerate:protein2genome:local exon 33413 33682 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 33413 33682 151 - . alignment_id 16 ; Query AmOr113 ; Align 33683 127 144 ; Align 33539 176 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 137 Query range: 212 -> 334 Target range: 13643 -> 12693 213 : LeuAlaValAlaGlyTyrArgPheLysHisAlaIleAspAsp<->SerAlaSerLysAsn : 231 :!!:!!:!! ! !!||||||!:!||| !||||||! !!: |||::! !!|||!.. ValSerMetArgArgTyrArgTyrLysCysAlaIleValGluLeuSerSerArgLysArg 13643 : GTTTCAATGCGTAGATATCGTTACAAATGTGCGATCGTGGAATTGTCCAGTCGGAAAAGG : 13586 232 : SerGluGluLysIleLysGluThrCysLysLysIleArgSerSerIleGlnGlyHisGlu : 251 !:!...! ! ! ! |||! !! !!:!!:!:!: !! !|||||||||||||||:!! AsnSerValThrGlnAspGluIleTyrArgArgValCysHisSerIleGlnGlyHisGln 13585 : AACAGTGTCACGCAGGATGAAATTTATAGAAGAGTGTGTCATTCGATTCAAGGACACCAG : 13526 252 : GlyAlaIleArg<->TyrLeuLysLysIleGluAspThrHisValAsnLeuLeuPheIle : 270 !||||||!:! ||||||||||||...... :::|||:::|||! !.!! HisAlaIleLysSerValLeuLysLysIleArgGlnIleValLeuAsnValLeuCysPhe 13525 : CATGCTATAAAGtcggtattaaaaaagatacgtcaaattgttttaaatgttCTTTGCTTT : 13466 271 : SerLeuGlyLeuIleIleMetCys{Ph} >>>> Target Intron 1 >>>> {e} : 279 ! !! !.!!:!!:!! !:!! !!{! } 578 bp { } LeuSerSerMetLeuGlnLeuArg{Se}++ ++{r} 13465 : TTGTCTAGCATGTTACAATTGCGC{TC}gt.........................ag{A} : 12859 280 : SerIleThrLeuLeuLysValValThrMetAspTyrCysLeuAspPheTyrLysTyrSer : 299 !!!|||:!!! ! !:!!||| !!.! !!!: ! ! !!!:||| !||| !!!!! ThrIleSerTrpLysGlnValSerAsnSerGluIleAsnAlaGluPheAlaLysAspCys 12858 : ACAATTTCTTGGAAACAGGTGTCGAACTCGGAGATTAATGCGGAGTTTGCCAAGGATTGC : 12801 300 : SerPheLeuIleValGlnLeuMetHisLeuCysTyrValMetIleGlnGlyGlnPheVal : 319 !!!|||:!!:!::!!||||||:!:|||:!! !|||:!!! :!!||||||||||||||| ThrPheIleValIleGlnLeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheVal 12800 : ACATTTATCGTGATTCAATTGGTACACATACTTTACCTAACTCTTCAAGGACAATTCGTG : 12741 320 : IleAspSerCysAsnGluIleTyrTyrSerIleTyrGluAlaSer : 334 ||||||:!! !.!.||||||!:! ! |||!!:!! |||...::: IleAspAlaAsnGluGluIlePheGluSerMet***GluValAsn 12740 : ATCGACGCGAACGAGGAAATCTTCGAATCGATGTAagaagtaaat : 12694 vulgar: AmOr113 212 334 . KQ414772.1 13643 12693 - 137 M 14 42 G 0 3 M 29 87 G 0 3 M 23 69 S 0 2 5 0 2 I 0 574 3 0 2 S 1 1 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 12694 13643 137 - . gene_id 17 ; sequence AmOr113 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 13438 13643 . - . KQ414772.1 exonerate:protein2genome:local exon 13438 13643 . - . insertions 6 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 13436 13437 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 12860 13437 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 12860 12861 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 12694 12859 . - . KQ414772.1 exonerate:protein2genome:local exon 12694 12859 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 12694 13643 137 - . alignment_id 17 ; Query AmOr113 ; Align 13644 213 42 ; Align 13599 227 87 ; Align 13509 256 69 ; Align 12859 280 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 134 -> 215 Target range: 20565 -> 20325 135 : SerLeuLeuPheLeuGlnValProTrpThrAlaArgLeuLeuTyrMetIleLysSerGln : 154 :!! !:!!|||||| ||||||!::.!! !!! !:!!||| !!!!: ! ! !!! ! AlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeu 20565 : GCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTG : 20508 155 : AsnThrSerProProMetLeuTyrValIleProGlyTyrTyrPheValAspAspAspArg : 174 |||! !!!! ! ! :!!!:!||| !|||!.!||||||!:::!!||| !!!:!:! AsnLysThrArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGln 20507 : AACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAA : 20448 175 : AspTyrTyrTyrPheIleGlnLeuHisMetSerLeuSerIleIleMetValAlaAsnVal : 194 |||||| .!.!!: !:!!|||!!:! !!!! !:!:|||||||||..! !:!! ---TyrTyrMetIleMetIleIleHisIleMetPheValValIleMetValCysValIle 20447 : ---TACTACATGATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATA : 20391 195 : TyrValAlaTyrAspThrCysTyrMetValPheValGlnHisValCysGlyLeuLeuAla : 214 !:! !|||! !|||! ! !|||:!! ! !|||||||||!.!||||||||||||||| PheCysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAla 20390 : TTCTGTGCTTGCGACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCT : 20331 215 : Val : 215 ||| Val 20330 : GTC : 20326 vulgar: AmOr113 134 215 . KQ414772.1 20565 20325 - 132 M 40 120 G 1 0 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20565 132 - . gene_id 18 ; sequence AmOr113 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20565 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20565 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 20326 20565 132 - . alignment_id 18 ; Query AmOr113 ; Align 20566 135 120 ; Align 20446 176 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 284 -> 330 Target range: 32137 -> 31999 285 : LysValValThrMetAspTyrCysLeuAspPheTyrLysTyrSerSerPheLeuIleVal : 304 |||!.! !! !|||||| !|||:!!!!:||||||||| !!!!!|||||||||:!:||| LysAlaSerMetMetAspProCysValGluPheTyrLysAspCysSerPheLeuValVal 32137 : aaGGCGTCTATGATGGATCCTTGCGTCGAGTTCTACAAGGATTGCAGTTTCCTTGTGGTG : 32080 305 : GlnLeuMetHisLeuCysTyrValMetIleGlnGlyGlnPheValIleAspSerCysAsn : 324 ||||||:!:|||||| !!:!:!! |||||||||!!.|||||||||! !||| !:!! GlnLeuValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleValSerHisAsp 32079 : CAGCTGGTTCATTTGCTTTTCCTTTCCATCCAGGGACACTTCGTTATAGTCTCGCATGAT : 32020 325 : GluIleTyrTyrSerIle : 330 :!!:!!||| !!|||!!: GlnValTyrAspSerMet 32019 : CAGGTTTACGATAGTATG : 32000 vulgar: AmOr113 284 330 . KQ414772.1 32137 31999 - 123 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 32000 32137 123 - . gene_id 19 ; sequence AmOr113 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 32000 32137 . - . KQ414772.1 exonerate:protein2genome:local exon 32000 32137 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 32000 32137 123 - . alignment_id 19 ; Query AmOr113 ; Align 32138 285 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 0 -> 95 Target range: 38829 -> 38388 1 : MetAspSerAspIleLeuGluLysArgPheLeuLysIleThrLysArgPheAlaLysLeu : 20 |||!!::!!||| !:!!|||!:!!.!!:!||| ! :!:!.!||||||! !!.!! !:!! MetGluAlaAspAspValGluArgAsnTyrLeuHisValAsnLysArgCysGlyThrVal 38829 : ATGGAAGCGGACGACGTGGAGAGGAATTATTTACACGTGAACAAAAGATGCGGAACAGTG : 38772 21 : SerGlyIleTrpProAspGlnAsnLysTyrLeuLysTyrIleSerTrpIleIleIleTyr : 40 ||||||||||||||| !! !!:!..! ! !|||!::|||.!! ! |||! !!: SerGlyIleTrpProTyrGlySerSerArgSerLysTrpIleGlyArgIleThrMetIle 38771 : TCTGGTATATGGCCGTATGGAAGCTCGCGATCAAAATGGATTGGACGAATAACGATGATA : 38712 41 : ValIleSerIleProSerIleValValGln >>>> Target Intron 1 >>>> I : 51 !!:!!!!!:!! !!.!!!!::!! !||| 156 bp | PheValThrValThrGlyMetMetSerGln+- ++I 38711 : TTCGTTACAGTTACAGGCATGATGTCCCAGgc.........................agA : 38523 52 : leAlaArgIleValHisIleSerThrAlaAsnValIleValGluGlnSerGlyIleAlaT : 71 ||||| !:!!!.! ! ! !:!! !:!! !:!!:!!||||||!!! !.!! !| leAlaTyrValAlaValAsnLeuSerIleAspAsnValIleGluGlnCysProPhePheT 38522 : TTGCATACGTCGCGGTGAATCTATCCATAGATAATGTAATCGAACAATGCCCATTTTTCA : 38463 72 : hrAlaIlePheLeuSerLeuLeuLysGluAlaAsnTyrIleLeuAsnAlaThrLysValL : 91 || ! ! ! ! !|||:!!||||||!.!||||||||||||:!!! ! !:!!|||! hrIleGlyValGlyLeuLeuIleLysGluValAsnTyrIleLeuHisGluGluGlnValA 38462 : CAATCGGCGTGGGACTACTTATAAAGGAGGTGAATTACATCCTCCACGAGGAACAGGTGA : 38403 92 : ysSerLeuPheAsn : 95 !.!!!|||.!.::! snThrLeuLeuSer 38402 : ATACTCTGCTATCC : 38389 vulgar: AmOr113 0 95 . KQ414772.1 38829 38388 - 111 M 50 150 5 0 2 I 0 152 3 0 2 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 38389 38829 111 - . gene_id 20 ; sequence AmOr113 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 38680 38829 . - . KQ414772.1 exonerate:protein2genome:local exon 38680 38829 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 38678 38679 . - . intron_id 1 ; splice_site "GC" KQ414772.1 exonerate:protein2genome:local intron 38524 38679 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 38524 38525 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 38389 38523 . - . KQ414772.1 exonerate:protein2genome:local exon 38389 38523 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 38389 38829 111 - . alignment_id 20 ; Query AmOr113 ; Align 38830 1 150 ; Align 38524 51 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr120 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 332 -> 382 Target range: 1345564 -> 1345714 333 : SerPheAsnIleSerIleAlaAlaTyrSerMetGlnTrpTyrGlnLeuProThrPh : 351 |||! !.!.!!:..! |||..!|||! !! .!.||||||.!.|||||| ! SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 352 : eIleLysAspGluIleCysMetIleIleLeuArgSerGlnArgProSerPheIleT : 370 !! ! ..!:!! .!. !||| !|||||||||!:!||||||!:!:!!| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 371 : hrAlaGlyLysLeuTyrIleMetHisLeuGluAsnPhe : 382 |||||||||||!!!|||:!:.!. ||||||!..||| hrAlaGlyLysPheTyrValPheSerLeuGluThrPhe 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTC : 1345714 vulgar: AmOr120 332 382 . KQ414782.1 1345564 1345714 + 108 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345714 108 + . gene_id 1 ; sequence AmOr120 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345714 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345714 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345714 108 + . alignment_id 1 ; Query AmOr120 ; Align 1345565 333 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 674 Query range: 122 -> 389 Target range: 18468 -> 16903 123 : LeuAlaMetPheTyrPheIleAsnAlaTyrCysCysSerLeuLeuPheLeuGlnValPro : 142 |||! ! !.!!!:! :!:||||||||| !||||||!!!||||||:!!||||||||| LeuAspArgIlePheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValPro 18468 : CTCGATCGGATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCA : 18411 143 : TrpThrAlaArgLeuLeuTyrMetIleLysSerGlnAsnThrSerProProMetLeuTyr : 162 |||:!!.!!||||||:!! !! ! !|||!!!||||||! !!!!||| !:!!! ! ! TrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuProVal 18410 : TGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCCAGTC : 18351 163 : ValIleProGlyTyrTyrPheValAspAspAspArgAspTyrTyrTyrPheIleGlnLeu : 182 |||:!!|||||||||||||||||| |||!!: !!!:|||||||||!:!||| !||| ValValProGlyTyrTyrPheVal---AspGluValGluTyrTyrTyrTyrIleIleLeu 18350 : GTCGTACCCGGATATTACTTCGTC---GACGAAGTAGAATACTATTATTACATCATACTT : 18294 183 : HisMetSerLeuSerIleIleMetValAlaAsnValTyrValAlaTyrAspThrCysTyr : 202 ||| !!!! !!!!|||:!:!!:|||!.! |||||| !|||! !|||||| !!||| HisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCysAspThrSerTyr 18293 : CACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTAC : 18234 203 : MetValPheValGlnHisValCysGlyLeuLeuAlaValAla{Gl} >>>> Target : 217 ||||||.!.|||||||||..!|||||||||!!!|||||||||{||} 79 MetValLeuValGlnHisThrCysGlyLeuPheAlaValAla{Gl}++ 18233 : ATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCC{GG}gt............ : 18185 218 : Intron 1 >>>> {y}TyrArgPheLysHisAlaIleAspAspSerAlaSer<-><-> : 230 bp {|}||||||||||||:!!:!!||| !!!:..! !||| ++{y}TyrArgPheLysAsnSerIleArgGluAspAsnSerValLys 18184 : .............ag{A}TACCGCTTCAAGAATTCAATTCGCGAGGACAATAGCGTGAAG : 18068 231 : <->LysAsnSerGluGluLysIleLysGluThrCysLysLysIleArgSerSerIleGln : 248 ||| !!! !!!:.!. !! ||||||.!!! !|||!!. !!! !||||||||| GlyLysTyrPheAspHisTrpThrLysGluAlaTyrLysAsnAlaCysPheSerIleGln 18067 : GGGAAGTATTTCGACCACTGGACGAAAGAGGCGTACAAGAACGCGTGTTTCTCCATTCAG : 18008 249 : GlyHisGluGlyAlaIle{Ar} >>>> Target Intron 2 >>>> {g}TyrLeu : 257 ||||||:!! !!||||||{!.} 113 bp {!}!:!:!! GlyHisGlnArgAlaIle{As}++ ++{n}PheVal 18007 : GGACATCAACGTGCTATA{AA}gt.........................ag{C}TTTGTA : 17868 258 : LysLysIleGluAspThrHisValAsnLeuLeuPheIleSerLeuGlyLeuIleIleMet : 277 |||:!!|||||| ! !|||! !!..! !||||||! !!!!|||||||||:!:|||:!: LysGluIleGluArgGlyHisAspThrTyrLeuPheThrCysLeuGlyLeuValIleLeu 17867 : AAGGAAATTGAACGCGGCCATGACACGTACCTTTTCACCTGCTTAGGCTTGGTGATTCTA : 17808 278 : CysPheSerIleThrLeuLeuLys >>>> Target Intron 3 >>>> ValValT : 288 ||||||||||||||||||:!!||| 81 bp :!! !| CysPheSerIleThrLeuIleLys++ ++LeuSerT 17807 : TGCTTCAGTATTACTCTGATCAAGgt.........................agCTGAGTA : 17694 289 : hrMetAspTyrCysLeuAspPheTyrLysTyrSerSerPheLeuIleValGlnLeuMetH : 308 || !|||!:! !:!!|||||||||!:!|||!!!|||||| !:!: !|||||||||| hrSerAspPheAspIleAspPheTyrArgTyrCysSerPheThrLeuCysGlnLeuMetH 17693 : CGTCGGATTTCGACATAGACTTCTACAGATATTGCAGTTTTACGTTGTGTCAACTGATGC : 17634 309 : isLeuCysTyrValMetIleGlnGlyGlnPheValIleAspSerCysAsnGluIleTyrT : 328 |||||! ! !:!!|||:!!|||||||||||||||:!:|||||||||.!...!|||:!! isLeuPheValIleMetLeuGlnGlyGlnPheValLeuAspSerCysGluArgIleHisG 17633 : ACCTGTTCGTTATCATGCTTCAGGGACAGTTCGTGCTGGATTCGTGCGAGAGAATTCACG : 17574 329 : yrSer{Il} >>>> Target Intron 4 >>>> {e}TyrGluAlaSerTrpTyrA : 337 ! :!!{||} 402 bp {|}||||||:!!! !||||||! luAla{Il}++ ++{e}TyrGluSerLeuTrpTyrT 17573 : AGGCG{AT}gt.........................ag{A}TACGAATCATTATGGTACA : 17145 338 : snIleAsnProLysIleGlnAlaLeuTyrIleLeuAlaLeuArgArgSerLeuThrProP : 357 ..! !::! !!|||! !||||||||||||:!::!!||||||||||||!:!||||||||| hrSerSerSerLysThrGlnAlaLeuTyrValValAlaLeuArgArgAsnLeuThrProT 17144 : CAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCGTTACGAAGAAACCTAACACCTA : 17085 358 : roArgLeuThrAlaGlyGlyLeuIleGluLeuAsnMetGlnSerPheSerGlu >>>> : 375 !! !!||||||||||||||||||:!::!!||||||||||||||||||:!!||| hrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMetGlnSerPheAlaGlu++ 17084 : CCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATGCAAAGCTTCGCAGAGgt..... : 17029 376 : Target Intron 5 >>>> ValIleLysLeuSerIleSerTyrTyrThrValLeuAr : 387 83 bp |||:!!|||:!!|||:!!||||||||||||||||||!: ++ValValLysMetSerValSerTyrTyrThrValLeuLy 17028 : ....................agGTGGTAAAAATGTCCGTTTCCTATTATACGGTGTTGAA : 16912 388 : gSerThr : 389 !!!!||| sThrThr 16911 : GACAACG : 16904 vulgar: AmOr113 122 389 . LHQN01017803.1 18468 16903 - 674 M 48 144 G 1 0 M 45 135 S 0 2 5 0 2 I 0 75 3 0 2 S 1 1 M 12 36 G 0 9 M 25 75 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 30 90 5 0 2 I 0 77 3 0 2 M 44 132 S 0 2 5 0 2 I 0 398 3 0 2 S 1 1 M 44 132 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 16904 18468 674 - . gene_id 1 ; sequence AmOr113 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 18188 18468 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18188 18468 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local splice5 18186 18187 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 18109 18187 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 18109 18110 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 17986 18108 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17986 18108 . - . insertions 9 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 17984 17985 . - . intron_id 2 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 17873 17985 . - . intron_id 2 LHQN01017803.1 exonerate:protein2genome:local splice3 17873 17874 . - . intron_id 1 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 17782 17872 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17782 17872 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 17780 17781 . - . intron_id 3 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 17701 17781 . - . intron_id 3 LHQN01017803.1 exonerate:protein2genome:local splice3 17701 17702 . - . intron_id 2 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 17567 17700 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17567 17700 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 17565 17566 . - . intron_id 4 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 17165 17566 . - . intron_id 4 LHQN01017803.1 exonerate:protein2genome:local splice3 17165 17166 . - . intron_id 3 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 17032 17164 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17032 17164 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 17030 17031 . - . intron_id 5 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 16949 17031 . - . intron_id 5 LHQN01017803.1 exonerate:protein2genome:local splice3 16949 16950 . - . intron_id 4 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 16904 16948 . - . LHQN01017803.1 exonerate:protein2genome:local exon 16904 16948 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 16904 18468 674 - . alignment_id 1 ; Query AmOr113 ; Align 18469 123 144 ; Align 18325 172 135 ; Align 18108 218 36 ; Align 18063 230 75 ; Align 17872 256 90 ; Align 17701 286 132 ; Align 17164 331 132 ; Align 16949 375 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 343 Query range: 254 -> 375 Target range: 29094 -> 28521 255 : ArgTyrLeuLysLysIleGluAspThrHisValAsnLeuLeuPheIleSerLeuGlyLeu : 274 ||||||:!!! !:!!|||||||||..!|||! !:::! !|||||||||! !:!!!.!||| ArgTyrIleMetGlnIleGluAspValHisAspSerTyrLeuPheIleIleValAlaLeu 29094 : AGATATATTATGCAGATCGAAGACGTTCACGACTCGTACCTGTTCATAATAGTCGCTTTA : 29037 275 : IleIleMetCysPheSerIleThrLeuLeuLys >>>> Target Intron 1 >>>> : 286 |||!!::!!! |||||||||||||||:!!!:! 77 bp IleMetLeuSerPheSerIleThrLeuValArg++ 29036 : ATCATGCTGTCGTTCAGTATCACTCTAGTCAGGgt......................... : 28999 287 : ValValThrMetAspTyrCysLeuAspPheTyrLysTyrSerSerPheLeuIleValG : 305 ..! !! !|||||| !|||:!!!!:||||||||||||!!!:!!||||||:!:|||| ++ThrSerMetMetAspProCysMetGluPheTyrLysTyrCysAlaPheLeuValValG 28998 : agACGTCCATGATGGACCCTTGCATGGAGTTCTACAAGTATTGCGCTTTCTTGGTGGTGC : 28867 306 : lnLeuMetHisLeuCysTyrValMetIleGlnGlyGlnPheValIleAspSerCysAsnG : 325 |||||:!:|||||| !!:!:!! |||||||||!!.||||||||| !||| !:!! lnLeuValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleLeuSerHisAspM 28866 : AACTGGTTCATTTGCTTTTCCTTTCTATCCAGGGACACTTTGTTATACTCTCGCATGACA : 28807 326 : luIleTyrTyrSer{Il} >>>> Target Intron 2 >>>> {e}TyrGluAlaS : 334 !! !||| !!!:!{||} 133 bp {|}|||...|||! etThrTyrAspAsn{Il}++ ++{e}TyrSerAlaL 28806 : TGACTTACGACAAC{AT}gt.........................ag{A}TATAGCGCAA : 28647 335 : erTrpTyrAsnIleAsnProLysIleGlnAlaLeuTyrIleLeuAlaLeuArgArgSerL : 354 .!|||||||||! !:::|||!:!! |||.!!||||||:!:||||||||||||||||||| ysTrpTyrAsnSerSerProArgThrGlnThrLeuTyrValLeuAlaLeuArgArgSerL 28646 : AATGGTACAACAGTTCGCCGAGAACGCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCT : 28587 355 : euThrProProArgLeuThrAlaGlyGlyLeuIleGluLeuAsnMetGlnSerPheSerG : 374 ||||||||||| !|||||||||||||||||||||...||||||:!!:!!!!!|||:!!| euThrProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaG 28586 : TGACTCCGCCATTGCTCACTGCGGGAGGACTGATTTCCTTGAATTTGGAGACTTTTGCCG : 28527 375 : luVal : 375 ||||| luVal 28526 : aggta : 28522 vulgar: AmOr113 254 375 . LHQN01017803.1 29094 28521 - 343 M 31 93 5 0 2 I 0 73 3 0 2 M 44 132 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 28522 29094 343 - . gene_id 2 ; sequence AmOr113 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 29002 29094 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29002 29094 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 29000 29001 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 28925 29001 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 28925 28926 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 28791 28924 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28791 28924 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 28789 28790 . - . intron_id 2 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 28658 28790 . - . intron_id 2 LHQN01017803.1 exonerate:protein2genome:local splice3 28658 28659 . - . intron_id 1 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 28522 28657 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28522 28657 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 28522 29094 343 - . alignment_id 2 ; Query AmOr113 ; Align 29095 255 93 ; Align 28925 286 132 ; Align 28657 331 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 220 Query range: 296 -> 387 Target range: 32978 -> 32577 297 : LysTyrSerSerPheLeuIleValGlnLeuMetHisLeuCysTyrValMetIleGlnGly : 316 ::!! !!!!!!|||||||||!.!||| !:!:|||:!! !:!:!!! !||||||||| ArgLeuCysThrPheLeuIleAlaGlnThrValHisMetLeuPheLeuThrIleGlnGly 32978 : agATTGTGCACGTTCCTGATCGCACAAACTGTACACATGCTGTTTTTGACGATTCAGGGA : 32921 317 : GlnPheValIleAspSerCysAsnGluIleTyrTyrSer{Il} >>>> Target Int : 330 |||||||||||||||||| :!!!!:! ! |||!:!{:!} 33 bp GlnPheValIleAspSer---HisAspThrValTyrAsn{Va}++ 32920 : CAGTTCGTGATCGATTCG---CATGATACAGTGTACAAT{GT}gt............... : 32878 331 : ron 1 >>>> {e}TyrGluAlaSerTrpTyrAsnIleAsnProLysIleGlnAlaLeu : 345 {!}|||||||||! !||||||!!.!!: ||||||:!!||| !||| ++{l}TyrGluAlaIleTrpTyrLysMetProProLysLeuGlnLeuLeu 32877 : ..........ag{A}TACGAGGCAATTTGGTATAAGATGCCACCTAAACTTCAGTTGCTA : 32804 346 : TyrIleLeuAlaLeuArgArgSerLeuThrProProArgLeuThrAlaGlyGlyLeuIle : 365 !!:!!:!!|||||||||!:!|||||||||||||||! !||||||||||||||||||!!: AspValValAlaLeuArgLysSerLeuThrProProIleLeuThrAlaGlyGlyLeuMet 32803 : GACGTTGTAGCGCTTAGAAAAAGCCTAACTCCTCCTATACTGACGGCGGGAGGGTTGATG : 32744 366 : GluLeuAsnMetGlnSerPheSerGlu >>>> Target Intron 2 >>>> ValI : 376 ..!|||:!!:!!.!.||||||:!!:!! 98 bp :::: ArgLeuAspLeuAsnSerPheAlaGln++ ++LeuL 32743 : CGGTTAGATTTGAATTCTTTCGCACAGgt.........................agctaC : 32613 377 : leLysLeuSerIleSerTyrTyrThrValLeuArg : 387 !:||| !!!!:!!||||||||||||!.!|||||| euLysAlaCysValSerTyrTyrThrAlaLeuArg 32612 : TGAAAGCTTGCGTCTCGTATTATACGGCACTGCGA : 32578 vulgar: AmOr113 296 387 . LHQN01017803.1 32978 32577 - 220 M 26 78 G 1 0 M 6 18 S 0 2 5 0 2 I 0 29 3 0 2 S 1 1 M 44 132 5 0 2 I 0 94 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 32578 32978 220 - . gene_id 3 ; sequence AmOr113 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 32881 32978 . - . LHQN01017803.1 exonerate:protein2genome:local exon 32881 32978 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local splice5 32879 32880 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 32848 32880 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 32848 32849 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 32715 32847 . - . LHQN01017803.1 exonerate:protein2genome:local exon 32715 32847 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 32713 32714 . - . intron_id 2 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 32617 32714 . - . intron_id 2 LHQN01017803.1 exonerate:protein2genome:local splice3 32617 32618 . - . intron_id 1 ; splice_site "ag" LHQN01017803.1 exonerate:protein2genome:local cds 32578 32616 . - . LHQN01017803.1 exonerate:protein2genome:local exon 32578 32616 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 32578 32978 220 - . alignment_id 3 ; Query AmOr113 ; Align 32979 297 78 ; Align 32901 324 18 ; Align 32847 331 132 ; Align 32617 375 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 199 Query range: 330 -> 388 Target range: 22422 -> 22171 331 : TyrGluAlaSerTrpTyrAsnIleAsnProLysIleGlnAlaLeuTyrIleLeuAlaLeu : 350 ||||||:!!!!!||||||||| !::: !|||! |||||||||||||||||||||||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeu 22422 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTA : 22365 351 : ArgArgSerLeuThrProProArgLeuThrAlaGlyGlyLeuIleGluLeuAsnMetGln : 370 |||!!!||||||!.!|||||| !|||||||||||||||!!!||| !||||||:!::!! ArgSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLys 22364 : CGGAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAG : 22305 371 : SerPheSerGlu >>>> Target Intron 1 >>>> ValIleLysLeuSerIleS : 381 !!!||||||||| 77 bp :!!||||||! !|||:!:| ThrPheSerGlu++ ++IleIleLysSerSerValS 22304 : ACCTTCTCAGAGgt.........................agATTATAAAATCATCCGTGT : 22195 382 : erTyrTyrThrValLeuArgSer : 388 ||||||||||||||:!!!:!||| erTyrTyrThrValMetGlnSer 22194 : CTTACTATACGGTGATGCAATCG : 22172 vulgar: AmOr113 330 388 . LHQN01017803.1 22422 22171 - 199 M 44 132 5 0 2 I 0 73 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 22172 22422 199 - . gene_id 4 ; sequence AmOr113 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 22291 22422 . - . LHQN01017803.1 exonerate:protein2genome:local exon 22291 22422 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 22289 22290 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 22214 22290 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 22214 22215 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 22172 22213 . - . LHQN01017803.1 exonerate:protein2genome:local exon 22172 22213 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 22172 22422 199 - . alignment_id 4 ; Query AmOr113 ; Align 22423 331 132 ; Align 22214 375 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 189 Query range: 120 -> 217 Target range: 26276 -> 25988 121 : SerPheLeuAlaMetPheTyrPheIleAsnAlaTyrCysCysSerLeuLeuPheLeuGln : 140 ||||||! ! !! !||| ! :!::!! !! ! |||:!! !||||||:!! SerPheTyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCys 26276 : TCATTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGC : 26219 141 : ValProTrpThrAlaArgLeuLeuTyrMetIleLysSerGlnAsnThrSerProProMet : 160 :!!|||!::..!:!!! !:!!||| !!!!::!!! ! !! !||| !!!!! ! !! ! LeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArg 26218 : TTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGG : 26159 161 : LeuTyrValIleProGlyTyrTyrPheValAspAspAspArgAspTyrTyrTyrPheIle : 180 |||!:!||| !|||!.!|||||||||||||||!!:|||!:! |||:!!|||!!.||| LeuPheValTyrProAlaTyrTyrPheValAspGluAspLys---TyrHisTyrLeuIle 26158 : TTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAA---TATCATTACTTGATC : 26102 181 : GlnLeuHisMetSerLeuSerIleIleMetValAlaAsnValTyrValAlaTyrAspThr : 200 ! !||||||! !||| !:!::!!|||:!! !::!|||!:! !|||! !|||.!! ValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 26101 : GTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 26042 201 : CysTyrMetValPheValGlnHisValCysGlyLeuLeuAlaValAlaGly : 217 !|||:!! ! !|||||||||!.!|||||||||||||||:!!|||||| AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 26041 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 25989 vulgar: AmOr113 120 217 . LHQN01017803.1 26276 25988 - 189 M 54 162 G 1 0 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26276 189 - . gene_id 5 ; sequence AmOr113 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26276 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26276 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26276 189 - . alignment_id 5 ; Query AmOr113 ; Align 26277 121 162 ; Align 26115 176 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 186 Query range: 120 -> 217 Target range: 14218 -> 13930 121 : SerPheLeuAlaMetPheTyrPheIleAsnAlaTyrCysCysSerLeuLeuPheLeuGln : 140 !!!!:!:!!!.!! !:!! .!. |||||| ! !||| !:!!||||||:!!..! ThrTyrIleValLysTyrSerIleAlaAsnAlaIleValCysValIleLeuPheValSer 14218 : ACGTACATTGTCAAATATTCGATAGCGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCG : 14161 141 : ValProTrpThrAlaArgLeuLeuTyrMetIleLysSerGlnAsnThrSerProProMet : 160 ..!||| !||| !!!.!:!!||| !!!!::!! ! !!:!!||| !|||! ! !:!: ThrProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspVal 14160 : ACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTA : 14101 161 : LeuTyrValIleProGlyTyrTyrPheValAspAspAspArgAspTyrTyrTyrPheIle : 180 !|||:!! !|||!.!|||||||||..!|||!!: !!!:! ||| !! !:!||| AlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLys---TyrAspValTyrIle 14100 : GCGTACATTTATCCGGCCTATTATTTCACCGACGAGCATAAG---TACGACGTGTACATA : 14044 181 : GlnLeuHisMetSerLeuSerIleIleMetValAlaAsnValTyrValAlaTyrAspThr : 200 !||||||:!!! ! !|||:!!:!!||| ! !!||||||||||||! !|||||| IleThrHisMetAlaSerValIleLeuValValPheTyrValTyrValAlaCysAspThr 14043 : ATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACC : 13984 201 : CysTyrMetValPheValGlnHisValCysGlyLeuLeuAlaValAlaGly : 217 !!|||!!: ! !!|||||||||! !||||||||||||||||||:!!||| SerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly 13983 : AGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGg : 13931 vulgar: AmOr113 120 217 . LHQN01017803.1 14218 13930 - 186 M 54 162 G 1 0 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13931 14218 186 - . gene_id 6 ; sequence AmOr113 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13931 14218 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13931 14218 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 13931 14218 186 - . alignment_id 6 ; Query AmOr113 ; Align 14219 121 162 ; Align 14057 176 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 177 Query range: 297 -> 384 Target range: 25456 -> 24881 298 : TyrSerSerPheLeuIleValGlnLeuMetHisLeuCysTyrValMetIleGlnGlyGln : 317 |||!!!!!!|||!!!! !.!||||||:!:|||:!! !:!:!!:!::!!||||||||| TyrCysThrPhePheThrAlaGlnLeuLeuHisMetLeuPheLeuValValGlnGlyGln 25456 : TACTGCACGTTCTTCACGGCCCAGTTGTTACACATGCTGTTCTTAGTCGTTCAGGGGCAG : 25399 318 : Phe{Va} >>>> Target Intron 1 >>>> {l}IleAspSerCysAsnGluIle : 326 |||{||} 310 bp {|}.!!!!::!: ||| Phe{Va}++ ++{l}PheGluAlaProAsnMetLys 25398 : TTC{GT}gt.........................ag{A}TTCGAAGCtccaaatatgaaa : 25062 327 : TyrTyrSerIle----TyrGluAlaSerTrpTyrAsnIleAsnProLysIleGlnAlaLe : 345 ||| :::####||||||:!!!!!||||||||| !::: !|||! |||||||| IleTyrArgLeu####TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLe 25061 : atttatcgtttacaGATACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTT : 25001 346 : uTyrIleLeuAlaLeuArgArgSerLeuThrProProArgLeuThrAlaGlyGlyLeuIl : 365 |||||||||||||||||||!!!||||||!.!|||||| !|||||||||||||||!!!|| uTyrIleLeuAlaLeuArgSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIl 25000 : ATACATATTAGCGTTACGGAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTAT : 24941 366 : eGluLeuAsnMetGlnSerPheSerGluValIleLysLeuSerIleSerTyrTyrThr : 384 | !||||||:!::!!!!!||||||||||||! !:!! ! !|||..! !!|||:!! eThrLeuAsnLeuLysThrPheSerGluValThrArgArgLeuIleGlnAspTyrSer 24940 : AACGTTGAATTTAAAGACCTTCTCAGAGGTAACGAGGCGACTAATACAAGATTACTCG : 24882 vulgar: AmOr113 297 384 . LHQN01017803.1 25456 24881 - 177 M 21 63 S 0 2 5 0 2 I 0 306 3 0 2 S 1 1 M 11 33 F 0 4 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 24882 25456 177 - . gene_id 7 ; sequence AmOr113 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 25392 25456 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25392 25456 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 25390 25391 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 25082 25391 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 25082 25083 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 24882 25081 . - . LHQN01017803.1 exonerate:protein2genome:local exon 24882 25081 . - . insertions 0 ; deletions 0 ; frameshifts 4 LHQN01017803.1 exonerate:protein2genome:local similarity 24882 25456 177 - . alignment_id 7 ; Query AmOr113 ; Align 25457 298 63 ; Align 25081 320 33 ; Align 25044 331 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 162 Query range: 120 -> 217 Target range: 29658 -> 29370 121 : SerPheLeuAlaMetPheTyrPheIleAsnAlaTyrCysCysSerLeuLeuPheLeuGln : 140 :::||| ::::::::! ! !|||!.! !! !|||! !:!!|||||| ! ! ThrPheSerSerLeuTyrValAlaAlaAsnGlyIlePheCysTyrValLeuPheThrAla 29658 : acattttcttctctataTGTCGCAGCAAATGGAATCTTCTGCTACGTTCTCTTCACCGCA : 29601 141 : ValProTrpThrAlaArgLeuLeuTyrMetIleLysSerGlnAsnThrSerProProMet : 160 ||| !! ||| !!|||:!!||| !!:!:|||..! !!:!!||| !|||! ! !:!! ValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyVal 29600 : GTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTG : 29541 161 : LeuTyrValIleProGlyTyrTyrPheValAspAspAspArgAspTyrTyrTyrPheIle : 180 !!:!:!! !|||!.! !!||| !||||||!!:!!: !!::!!||||||!:!:!: GlyPheIleTyrProAlaAsnTyrGlyValAspGluGlu---GluHisTyrTyrTyrLeu 29540 : GGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAG---GAGCATTACTACTATCTG : 29484 181 : GlnLeuHisMetSerLeuSerIleIleMetValAlaAsnValTyrValAlaTyrAspThr : 200 ..! !|||||| !! ! !|||! !:!:||| ! !||||||:!!:!!! !|||||| MetGlyHisMetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThr 29483 : ATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGTGACACG : 29424 201 : CysTyrMetValPheValGlnHisValCysGlyLeuLeuAlaValAlaGly : 217 !|||||| !.!!|||||||||!.!|||||||||||| !:!!:!!||| IleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSerGly 29423 : ATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCTGGG : 29371 vulgar: AmOr113 120 217 . LHQN01017803.1 29658 29370 - 162 M 53 159 G 1 0 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29371 29658 162 - . gene_id 8 ; sequence AmOr113 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29371 29658 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29371 29658 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 29371 29658 162 - . alignment_id 8 ; Query AmOr113 ; Align 29659 121 159 ; Align 29500 175 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 158 Query range: 330 -> 375 Target range: 475 -> 340 331 : TyrGluAlaSerTrpTyrAsnIleAsnProLysIleGlnAlaLeuTyrIleLeuAlaLeuArgA : 352 |||!!:||| !|||||||||! !!..! !::! ||| !||||||:!:||||||||||||| TyrAspAlaValTrpTyrAsnSerThrGlnArgSerGlnIleLeuTyrLeuLeuAlaLeuArgA 475 : TACGATGCAGTATGGTACAACAGTACGCAGCGATCGCAAATTTTGTACCTGTTAGCTTTAAGGA : 412 353 : rgSerLeuThrProProArgLeuThrAlaGlyGlyLeuIleGluLeuAsnMetGlnSerPheSe : 373 |||||||||||||||||! !|||:!!|||||||||||||||..!|||||||||:!!!!!||||| rgSerLeuThrProProLeuLeuSerAlaGlyGlyLeuIleSerLeuAsnMetGluThrPheSe 411 : GGTCTTTAACTCCACCACTGCTTTCTGCAGGAGGACTGATTTCGTTGAATATGGAAACTTTTTC : 349 374 : rGluVal : 375 |:!!||| rLysVal 348 : GAAGGTA : 341 vulgar: AmOr113 330 375 . LHQN01017803.1 475 340 - 158 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 341 475 158 - . gene_id 9 ; sequence AmOr113 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 341 475 . - . LHQN01017803.1 exonerate:protein2genome:local exon 341 475 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 341 475 158 - . alignment_id 9 ; Query AmOr113 ; Align 476 331 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 156 Query range: 325 -> 379 Target range: 12661 -> 12499 326 : IleTyrTyrSerIleTyrGluAlaSerTrpTyrAsnIleAsnProLysIleGlnAlaLeu : 345 :!!:!!!:!|||! !|||.!.|||! !|||||||||! !:!! !!:!! |||:!!||| ValHisPheSerArgTyrAsnAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeu 12661 : GTCCATTTTTCTAGATACAACGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTG : 12604 346 : TyrIleLeuAlaLeuArgArgSerLeuThrProProArgLeuThrAlaGlyGlyLeuIle : 365 !:!:!!||||||||||||!.!!!!|||:!! !!|||!:!:!!|||||||||||||||||| PheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIle 12603 : TTTGTATTAGCATTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATT : 12544 366 : GluLeuAsnMetGlnSerPheSerGluValIleLysLeuSer : 379 !:!!|||:!!||||||||||||||||||! !:::! !||| ThrMetAsnLeuGlnSerPheSerGluValThrArgSerSer 12543 : ACAATGAACTTGCAAAGTTTCTCAGAGGTAACTCGTTCATCG : 12500 vulgar: AmOr113 325 379 . LHQN01017803.1 12661 12499 - 156 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 12500 12661 156 - . gene_id 10 ; sequence AmOr113 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 12500 12661 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12500 12661 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 12500 12661 156 - . alignment_id 10 ; Query AmOr113 ; Align 12662 326 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 217 -> 334 Target range: 13664 -> 12696 218 : TyrArgPheLysHisAlaIleAspAsp<->SerAlaSerLysAsnSerGluGluLysIle : 236 ||||||!:!||| !||||||! !!: |||::! !!|||!..!:!...! ! ! TyrArgTyrLysCysAlaIleValGluLeuSerSerArgLysArgAsnSerValThrGln 13664 : TATCGTTACAAATGTGCGATCGTGGAATTGTCCAGTCGGAAAAGGAACAGTGTCACGCAG : 13607 237 : LysGluThrCysLysLysIleArgSerSerIleGlnGlyHisGluGlyAlaIleArg<-> : 256 ! |||! !! !!:!!:!:!: !! !|||||||||||||||:!! !||||||!:! AspGluIleTyrArgArgValCysHisSerIleGlnGlyHisGlnHisAlaIleLysSer 13606 : GATGAAATTTATAGAAGAGTGTGTCATTCGATTCAAGGACACCAGCATGCTATAAAGtcg : 13547 257 : TyrLeuLysLysIleGluAspThrHisValAsnLeuLeuPheIleSerLeuGlyLeuIle : 275 ||||||||||||...... :::|||:::||| ... .!!:!!:!! ValLeuLysLysIleArgGlnIleValLeuAsnValLeuCysPhePheSerSerMetLeu 13546 : gtattaaaaaagatacgtcaaattgttttaaatgttctttgctttttttctAGCATGTTA : 13487 276 : IleMetCys{Ph} >>>> Target Intron 1 >>>> {e}SerIleThrLeuLeu : 284 :!!:!: !!{ } 611 bp { }!!!|||..!! ! ! LeuLeuArg{Pr}++ ++{o}ThrIleValTrpLys 13486 : CTATTACGC{CC}gt.........................ag{A}ACAATTGTTTGGAAA : 12849 285 : LysValValThrMetAspTyrCysLeuAspPheTyrLysTyrSerSerPheLeuIleVal : 304 :!!||| !!.! !!!: ! ! !!!:||| !||| !!!!!!!!|||:!!:!::!! GlnValSerAsnSerGluIleAsnAlaGluPheAlaLysAspCysThrPheIleValIle 12848 : CAGGTGTCGAACTCGGAGATTAACGCGGAGTTTGCCAAGGATTGCACATTTATCGTGATT : 12789 305 : GlnLeuMetHisLeuCysTyrValMetIleGlnGlyGlnPheValIleAspSerCysAsn : 324 ||||||:!:|||:!! !|||:!!! :!!|||||||||||||||||||||:!! !.!. GlnLeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAspAlaAsnGlu 12788 : CAATTGGTACACATACTTTACCTAACTCTTCAAGGACAATTCGTGATCGACGCGAACGAG : 12729 325 : GluIleTyrTyrSerIleTyrGluAlaSer : 334 ||||||!:! ! |||!!:!! |||...::: GluIlePheGluSerMet***GluValAsn 12728 : GAAATCTTCGAATCGATGTAagaagtaaat : 12697 vulgar: AmOr113 217 334 . LHQN01017803.1 13664 12696 - 139 M 9 27 G 0 3 M 29 87 G 0 3 M 23 69 S 0 2 5 0 2 I 0 607 3 0 2 S 1 1 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 12697 13664 139 - . gene_id 11 ; sequence AmOr113 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 13474 13664 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13474 13664 . - . insertions 6 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 13472 13473 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 12863 13473 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 12863 12864 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 12697 12862 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12697 12862 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 12697 13664 139 - . alignment_id 11 ; Query AmOr113 ; Align 13665 218 27 ; Align 13635 227 87 ; Align 13545 256 69 ; Align 12862 280 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 0 -> 54 Target range: 26859 -> 26697 1 : MetAspSerAspIleLeuGluLysArgPheLeuLysIleThrLysArgPheAlaLysLeu : 20 ||||||:!! !! ||||||||||||!:!|||!:!|||!.!|||!:!.!!!.!! !||| MetAspAlaIleThrLeuGluLysArgTyrLeuArgIleAsnLysLysLeuGlyMetLeu 26859 : ATGGACGCGATCACGTTAGAGAAACGTTACTTGAGAATCAACAAGAAGCTCGGTATGCTA : 26802 21 : SerGlyIleTrpProAspGlnAsnLysTyrLeuLysTyrIleSerTrpIleIleIleTyr : 40 !!!|||:!:|||||| !!|||!!.!..! ! !|||!::|||||| ! ! !:!!:!: ! ThrGlyValTrpProTyrGlnLysSerSerProLysTrpIleSerArgThrValValLeu 26801 : ACCGGTGTGTGGCCCTATCAAAAGAGCTCGCCAAAATGGATCAGTCGAACCGTAGTGCTC : 26742 41 : ValIleSerIleProSerIleValValGlnIleAlaArgIle : 54 !!:!!! !||||||!!! !|||..!|||:!! :::||| PheValIleIleProCysTyrValThrGlnValGluLysIle 26741 : TTTGTAATAATACCTTGTTACGTTACACAGGTAgaaaaaata : 26698 vulgar: AmOr113 0 54 . LHQN01017803.1 26859 26697 - 117 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 26698 26859 117 - . gene_id 12 ; sequence AmOr113 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 26698 26859 . - . LHQN01017803.1 exonerate:protein2genome:local exon 26698 26859 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 26698 26859 117 - . alignment_id 12 ; Query AmOr113 ; Align 26860 1 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 0 -> 51 Target range: 15461 -> 15308 1 : MetAspSerAspIleLeuGluLysArgPheLeuLysIleThrLysArgPheAlaLysLeu : 20 ||||||:!! !! !||||||:!!||||||:!!|||:!:||||||! !! !||| ! !!! MetAspAlaIleThrLeuGluGluArgPheIleLysLeuThrLysIleCysAlaHisPhe 15461 : ATGGACGCGATCACTCTAGAGGAGCGATTCATCAAGTTGACCAAGATATGCGCCCACTTC : 15404 21 : SerGlyIleTrpProAspGlnAsnLysTyrLeuLysTyrIleSerTrpIleIleIleTyr : 40 ||||||.!!|||||| |||!:!||| ! !||||||:!!||| ! ||||||! ||| SerGlyPheTrpProTrpGlnSerLysLeuSerLysTyrValSerArgIleIleThrTyr 15403 : TCCGGTTTCTGGCCATGGCAGAGCAAACTGTCGAAATACGTATCGCGAATAATAACGTAC : 15344 41 : ValIleSerIleProSerIleValValGlnIle : 51 ..!||| !.!! !! !:!! !!..!|||:!: ThrIleValPheThrValLeuPheThrGlnVal 15343 : ACCATCGTTTTCACGGTTCTCTTCACGCAGGTG : 15309 vulgar: AmOr113 0 51 . LHQN01017803.1 15461 15308 - 116 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 15309 15461 116 - . gene_id 13 ; sequence AmOr113 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 15309 15461 . - . LHQN01017803.1 exonerate:protein2genome:local exon 15309 15461 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 15309 15461 116 - . alignment_id 13 ; Query AmOr113 ; Align 15462 1 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 257 Query range: 121 -> 216 Target range: 26273 -> 25988 122 : PhePheCysSerPheTyrGluValSerIleTyrSerCysGlyPheMetPheLeuSerMet : 141 |||!:!! !!!!||| ! !||| !|||! ! !|||!.! !:!:|||:!!!!!:!! PheTyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeu 26273 : TTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTG : 26216 142 : ProSerIleProLeuIleMetAsnValIleMetProLeuAsnGluSerArgSerArgGlu : 161 |||! !:!: !!! !|||:!!:!!:!!:!!|||||||||||||||!!!|||:!!||| ! ProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeu 26215 : CCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTG : 26156 162 : LeuValTyrProSerTyrTyrPheValAspGluGlnLysTyrTyrTyrLeuIleThrGly : 181 !!!|||||||||:!!||||||||||||||||||.!.||||||:!!|||||||||..!||| PheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGly 26155 : TTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGG : 26096 182 : HisMetLeuAlaValCysLeuGlyHisValPheValTyrIleAlaCysAspIleAsnLeu : 201 ||||||! ! !||| :!! !! !:!!! !|||!:! !||||||||| !|||! ! HisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyr 26095 : CATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTAC : 26036 202 : IleHisValValHisHisGlyCysAlaLeuLeuThrIleSerGly : 216 :!::!!!.!|||!!.|||!.!|||!.!||||||.!!|||:!!||| ValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 26035 : GTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 25989 vulgar: AmOr107 121 216 . LHQN01017803.1 26273 25988 - 257 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26273 257 - . gene_id 1 ; sequence AmOr107 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26273 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26273 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26273 257 - . alignment_id 1 ; Query AmOr107 ; Align 26274 122 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 223 Query range: 133 -> 216 Target range: 14179 -> 13930 134 : CysGlyPheMetPheLeuSerMetProSerIleProLeuIleMetAsnValIleMetPro : 153 |||! !.!!:!!|||:!!|||! !||| !! !|||! !|||:!!:!!:!!:!!:!:||| CysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuPro 14179 : TGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCG : 14122 154 : LeuAsnGluSerArgSerArgGluLeuValTyrProSerTyrTyrPheValAspGluGln : 173 !||||||||||||..! !! !! !:!!||||||:!!|||||||||..!||||||!!. LysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHis 14121 : AAGAACGAGTCACGAGACGTAGCGTACATTTATCCGGCCTATTATTTCACCGACGAGCAT : 14062 174 : LysTyrTyrTyrLeuIleThrGlyHisMetLeuAlaValCysLeuGlyHisValPheVal : 193 |||||| !! ! !|||! ! !|||||| !:!!||| !|||! ! !!!:!||| LysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrVal 14061 : AAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTG : 14002 194 : TyrIleAlaCysAspIleAsnLeuIleHisValValHisHisGlyCysAlaLeuLeuThr : 213 |||:!!|||||||||! !!:!! !|||:!!||||||!!.|||||||||!.!||||||.!! TyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAla 14001 : TACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCC : 13942 214 : IleSerGly : 216 :!:|||||| ValSerGly 13941 : GTGTCCGGg : 13931 vulgar: AmOr107 133 216 . LHQN01017803.1 14179 13930 - 223 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13931 14179 223 - . gene_id 2 ; sequence AmOr107 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13931 14179 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13931 14179 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13931 14179 223 - . alignment_id 2 ; Query AmOr107 ; Align 14180 134 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 196 Query range: 133 -> 216 Target range: 29619 -> 29370 134 : CysGlyPheMetPheLeuSerMetProSerIleProLeuIleMetAsnValIleMetPro : 153 ||| ! !!:!:||| !:!!:!! !!! !! !|||! !:!!:!::!!:!!||| !||| CysTyrValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerPro 29619 : TGCTACGTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCG : 29562 154 : LeuAsnGluSerArgSerArgGluLeuValTyrProSerTyrTyrPheValAspGluGln : 173 !||||||||||||.!! !! !!!:!!||||||:!! !!||| !|||||||||:!! LysAsnGluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGlu 29561 : AAAAACGAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAG : 29502 174 : LysTyrTyrTyrLeuIleThrGlyHisMetLeuAlaValCysLeuGlyHisValPheVal : 193 :!!:!!||||||! !:!:! !||||||||||||:!!||| !! ! !!|||||| GluHisTyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheVal 29501 : GAGCATTACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTC : 29442 194 : TyrIleAlaCysAspIleAsnLeuIleHisValValHisHisGlyCysAlaLeuLeuThr : 213 ||||||:!!||||||! ! !! !!!::!!:!!|||!!.|||!.!|||!.!||||||!.! TyrIleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsn 29441 : TACATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAAC : 29382 214 : IleSerGly : 216 :!!|||||| LeuSerGly 29381 : CTCTCTGGG : 29371 vulgar: AmOr107 133 216 . LHQN01017803.1 29619 29370 - 196 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29371 29619 196 - . gene_id 3 ; sequence AmOr107 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29371 29619 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29371 29619 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 29371 29619 196 - . alignment_id 3 ; Query AmOr107 ; Align 29620 134 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 168 Query range: 125 -> 216 Target range: 18459 -> 18186 126 : PheTyrGluValSerIleTyrSerCysGlyPheMetPheLeuSerMetProSerIlePro : 145 .!!!:! !|||!:! |||! !|||..!|||:!!|||:!!..!:!!|||!!! !! IlePheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpSerThr 18459 : ATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGTCGACC : 18402 146 : LeuIleMetAsnValIleMetProLeuAsnGluSerArgSerArgGluLeuValTyrPro : 165 ! !:!::!!||| ! !! ! !!! !||| !!!!! !||| ! !:!!||| ||| ArgLeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuProValValValPro 18401 : CGATTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCC : 18342 166 : SerTyrTyrPheValAspGluGlnLysTyrTyrTyrLeuIleThrGlyHisMetLeuAla : 185 .!!|||||||||||||||||| !:!!|||||||||! !|||! ! !||| !..! GlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCys 18341 : GGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGC : 18282 186 : ValCysLeuGlyHisValPheValTyrIleAlaCysAspIleAsnLeuIleHisValVal : 205 ..! !||| ! ||| ! |||||| !|||||||||! !!:!! !!!: :!!||| ThrIleLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuVal 18281 : ACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTG : 18222 206 : HisHisGlyCysAlaLeuLeuThrIleSerGly : 216 !!.||| !|||!.!|||!!!.!!:!::!!||| GlnHisThrCysGlyLeuPheAlaValAlaGly 18221 : CAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 18187 vulgar: AmOr107 125 216 . LHQN01017803.1 18459 18186 - 168 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18187 18459 168 - . gene_id 4 ; sequence AmOr107 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18187 18459 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18187 18459 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18187 18459 168 - . alignment_id 4 ; Query AmOr107 ; Align 18460 126 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 153 Query range: 325 -> 377 Target range: 28677 -> 28521 326 : GluGluValPheLysThrIleTyrAspAlaArgTrpTyrTyrGlySerSerLysThrGln : 345 :!!|||:!!||| !! !|||..!|||!:!|||||| !!.!!||| !!!:!|||||| GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 28677 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 28620 346 : SerLeuTyrLeuLeuValLeuArgLysCysLeuAsnProProLysLeuThrGlyGlyGly : 365 !!!||||||:!!|||!.!||||||!:! !!|||!.!|||||| !||||||!.!|||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 28619 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 28560 366 : LeuIleAlaLeuAsnLeuAspSerPheValLysVal : 377 ||||||:!!|||||||||!!:!!!|||!.!:::||| LeuIleSerLeuAsnLeuGluThrPheAlaGluVal 28559 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGaggta : 28522 vulgar: AmOr107 325 377 . LHQN01017803.1 28677 28521 - 153 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 28522 28677 153 - . gene_id 5 ; sequence AmOr107 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 28522 28677 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28522 28677 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 28522 28677 153 - . alignment_id 5 ; Query AmOr107 ; Align 28678 326 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 142 Query range: 332 -> 386 Target range: 25043 -> 24881 333 : TyrAspAlaArgTrpTyrTyrGlySerSerLysThrGlnSerLeuTyrLeuLeuValLeu : 352 |||!!::!!! !|||||| !!..!|||!!!|||||||||:!!||||||:!!|||!.!||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeu 25043 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTA : 24986 353 : ArgLysCysLeuAsnProProLysLeuThrGlyGlyGlyLeuIleAlaLeuAsnLeuAsp : 372 |||!.. !!|||||||||||| !||||||!.!||||||!!!|||.!!||||||||| ! ArgSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLys 24985 : CGGAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAG : 24926 373 : SerPheValLysValLeuLysThrSerPheSerTyrTyrThr : 386 !!!||| !:!!||| !!:! ! !.!...! !!|||:!! ThrPheSerGluValThrArgArgLeuIleGlnAspTyrSer 24925 : ACCTTCTCAGAGGTAACGAGGCGACTAATACAAGATTACTCG : 24882 vulgar: AmOr107 332 386 . LHQN01017803.1 25043 24881 - 142 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 24882 25043 142 - . gene_id 6 ; sequence AmOr107 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 24882 25043 . - . LHQN01017803.1 exonerate:protein2genome:local exon 24882 25043 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 24882 25043 142 - . alignment_id 6 ; Query AmOr107 ; Align 25044 333 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 332 -> 377 Target range: 22422 -> 22287 333 : TyrAspAlaArgTrpTyrTyrGlySerSerLysThrGlnSerLeuTyrLeuLeuValLeu : 352 |||!!::!!! !|||||| !!..!|||!!!|||||||||:!!||||||:!!|||!.!||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeu 22422 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTA : 22365 353 : ArgLysCysLeuAsnProProLysLeuThrGlyGlyGlyLeuIleAlaLeuAsnLeuAsp : 372 |||!.. !!|||||||||||| !||||||!.!||||||!!!|||.!!||||||||| ! ArgSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLys 22364 : CGGAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAG : 22305 373 : SerPheValLysVal : 377 !!!||| !:!!||| ThrPheSerGluVal 22304 : ACCTTCTCAGAGGTA : 22288 vulgar: AmOr107 332 377 . LHQN01017803.1 22422 22287 - 139 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 22288 22422 139 - . gene_id 7 ; sequence AmOr107 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 22288 22422 . - . LHQN01017803.1 exonerate:protein2genome:local exon 22288 22422 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 22288 22422 139 - . alignment_id 7 ; Query AmOr107 ; Align 22423 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 136 Query range: 332 -> 377 Target range: 475 -> 340 333 : TyrAspAlaArgTrpTyrTyrGlySerSerLysThrGlnSerLeuTyrLeuLeuValLeuArgL : 354 ||||||||| !|||||| !!.!!!!!..!::!:!!|||! !||||||||||||!.!||||||! TyrAspAlaValTrpTyrAsnSerThrGlnArgSerGlnIleLeuTyrLeuLeuAlaLeuArgA 475 : TACGATGCAGTATGGTACAACAGTACGCAGCGATCGCAAATTTTGTACCTGTTAGCTTTAAGGA : 412 355 : ysCysLeuAsnProProLysLeuThrGlyGlyGlyLeuIleAlaLeuAsnLeuAspSerPheVa : 375 :!! !|||!.!|||||| !|||:!!!.!||||||||||||:!!||||||:!!!!:!!!||| rgSerLeuThrProProLeuLeuSerAlaGlyGlyLeuIleSerLeuAsnMetGluThrPheSe 411 : GGTCTTTAACTCCACCACTGCTTTCTGCAGGAGGACTGATTTCGTTGAATATGGAAACTTTTTC : 349 376 : lLysVal : 377 !|||||| rLysVal 348 : GAAGGTA : 341 vulgar: AmOr107 332 377 . LHQN01017803.1 475 340 - 136 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 341 475 136 - . gene_id 8 ; sequence AmOr107 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 341 475 . - . LHQN01017803.1 exonerate:protein2genome:local exon 341 475 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 341 475 136 - . alignment_id 8 ; Query AmOr107 ; Align 476 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 127 -> 205 Target range: 33717 -> 33483 128 : GluValSerIleTyrSerCysGlyPheMetPheLeuSerMetProSerIleProLeuIle : 147 ..!|||!!!||||||! ! ! ! !! !:!!|||! !!!! !||| !||||||!!!||| SerValThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIle 33717 : TCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATC : 33660 148 : MetAsnValIleMetProLeuAsnGluSerArgSerArgGluLeuValTyrProSerTyr : 167 :!!:!!:!!||| |||||||||||||||||| !!||| !! !!.!||| !:!!||| LeuAspLeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyr 33659 : CTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTAC : 33600 168 : TyrPheValAspGluGlnLysTyrTyrTyrLeuIleThrGlyHisMetLeuAlaValCys : 187 ! !!:! !!:!! !.!. ! |||||||||! !:!!..!|||:!!! !||| ! CysTyrPheAsnProAspAspTyrTyrTyrTyrValValGlyTyrThrSerAlaCysIle 33599 : TGTTACTTCAATCCGGACGACTACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATA : 33540 188 : LeuGlyHisValPheValTyrIleAlaCysAspIleAsnLeuIleHisValVal : 205 ! ! !! !.!!||| !:!!!.!..!||||||! !:!!||||||:!!||| GlyMetAlaGlyLeuValLeuValGlyAlaAspIleIleMetIleHisLeuVal 33539 : GGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATTATGATACATCTTGTA : 33484 vulgar: AmOr107 127 205 . LHQN01017803.1 33717 33483 - 132 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33484 33717 132 - . gene_id 9 ; sequence AmOr107 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33484 33717 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33484 33717 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33484 33717 132 - . alignment_id 9 ; Query AmOr107 ; Align 33718 128 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 332 -> 377 Target range: 17163 -> 17028 333 : TyrAspAlaArgTrpTyrTyrGlySerSerLysThrGlnSerLeuTyrLeuLeuValLeu : 352 |||!!::!! !|||||| .!!|||||||||||||||:!!||||||:!!:!!!.!||| TyrGluSerLeuTrpTyrThrSerSerSerLysThrGlnAlaLeuTyrValValAlaLeu 17163 : TACGAATCATTATGGTACACAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCGTTA : 17106 353 : ArgLysCysLeuAsnProProLysLeuThrGlyGlyGlyLeuIleAlaLeuAsnLeuAsp : 372 |||!:! !|||!..||| !! ||||||!.!|||||||||:!: !||||||:!!.!. ArgArgAsnLeuThrProThrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMetGln 17105 : CGAAGAAACCTAACACCTACCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATGCAA : 17046 373 : SerPheValLysVal : 377 ||||||!.!:!!||| SerPheAlaGluVal 17045 : AGCTTCGCAGAGGTA : 17029 vulgar: AmOr107 332 377 . LHQN01017803.1 17163 17028 - 130 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 17029 17163 130 - . gene_id 10 ; sequence AmOr107 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 17029 17163 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17029 17163 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 17029 17163 130 - . alignment_id 10 ; Query AmOr107 ; Align 17164 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 276 -> 332 Target range: 12876 -> 12708 277 : IleIleValThrPheThrGlyThrPheIleLysLeuThrSerMetGluIleGlyGlyArg : 296 :!:|||:!! ! ||| !..!!::! !:!!:!!:!!!:! !||||||..!!.!..! LeuIleIleLeuArgThrIleValTrpLysGlnValSerAsnSerGluIleAsnAlaGlu 12876 : CTGATCATCCTCAGAACAATTGTTTGGAAACAGGTGTCGAACTCGGAGATTAACGCGGAG : 12819 297 : PhePheThrPheCysThrPheThrIleGlyGlnLeuThrHisLeuLeuPheLeuMetVal : 316 ||| !! ! !|||||||||! !:!: !||||||..!|||:!!|||!:!|||! :!! PheAlaLysAspCysThrPheIleValIleGlnLeuValHisIleLeuTyrLeuThrLeu 12818 : TTTGCCAAGGATTGCACATTTATCGTGATTCAATTGGTACACATACTTTACCTAACTCTT : 12759 317 : MetGlyGlnPheLeuIleAspSerAsnGluGluValPheLysThrIle : 332 ...|||||||||:!!||||||:!!|||||||||:!!|||:!!:!!!!: GlnGlyGlnPheValIleAspAlaAsnGluGluIlePheGluSerMet 12758 : CAAGGACAATTCGTGATCGACGCGAACGAGGAAATCTTCGAATCGATG : 12709 vulgar: AmOr107 276 332 . LHQN01017803.1 12876 12708 - 121 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 12709 12876 121 - . gene_id 11 ; sequence AmOr107 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 12709 12876 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12709 12876 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 12709 12876 121 - . alignment_id 11 ; Query AmOr107 ; Align 12877 277 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 0 -> 58 Target range: 26859 -> 26685 1 : MetAspGlnGlnAlaMetGluGluLeuTyrLeuLysAspAsnLysPhePheGlyGlnLeu : 20 |||||| ! .!!:!:|||:!!! !||||||!:! !|||||| .!!|||..!||| MetAspAlaIleThrLeuGluLysArgTyrLeuArgIleAsnLysLysLeuGlyMetLeu 26859 : ATGGACGCGATCACGTTAGAGAAACGTTACTTGAGAATCAACAAGAAGCTCGGTATGCTA : 26802 21 : ValGlyValTrpProAspGlnGlyLysPheMetLysPheLeuMetArgPheIleIleLeu : 40 ..!|||||||||||| !!||| !!..! |||!:::!!! ||| !:!!:!:||| ThrGlyValTrpProTyrGlnLysSerSerProLysTrpIleSerArgThrValValLeu 26801 : ACCGGTGTGTGGCCCTATCAAAAGAGCTCGCCAAAATGGATCAGTCGAACCGTAGTGCTC : 26742 41 : IleValMetIleIleAlaPheIleAlaGlnIleSerArgValAlaValPheTyr : 58 .!!|||!!:||| !..!!:!:!!.!!|||:!!...:::::: :::..!!:! PheValIleIleProCysTyrValThrGlnValGluLysIleArgIleIlePhe 26741 : TTTGTAATAATACCTTGTTACGTTACACAGGTAgaaaaaataaggattatCTTT : 26686 vulgar: AmOr107 0 58 . LHQN01017803.1 26859 26685 - 115 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 26686 26859 115 - . gene_id 12 ; sequence AmOr107 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 26686 26859 . - . LHQN01017803.1 exonerate:protein2genome:local exon 26686 26859 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 26686 26859 115 - . alignment_id 12 ; Query AmOr107 ; Align 26860 1 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 0 -> 50 Target range: 30582 -> 30432 1 : MetAspGlnGlnAlaMetGluGluLeuTyrLeuLysAspAsnLysPhePheGlyGlnLeu : 20 |||!!: !...! !:!!|||..! !|||||| ! ! |||||||||! !||| !:!! MetGluAlaSerAspValGluArgAsnTyrLeuTyrValAsnLysPheCysGlyThrMet 30582 : ATGGAAGCGAGCGACGTGGAGAGGAATTATTTGTACGTGAACAAATTTTGCGGAACGATG : 30525 21 : ValGlyValTrpProAspGlnGlyLysPheMetLysPheLeuMetArgPheIleIleLeu : 40 !.!|||:!!|||||| !! !! !:!! ||||||!:::!! ||||||:!:|||||| AlaGlyIleTrpProTyrGlyAspGluLysMetLysTrpValSerArgPheValIleLeu 30524 : GCCGGTATATGGCCGTACGGGGACGAGAAAATGAAATGGGTTTCACGATTCGTGATACTA : 30465 41 : IleValMetIleIleAlaPheIleAlaGln : 50 :!::!!! :!!! !|||.!.! .!!||| ValIleThrValThrAlaMetThrThrGln 30464 : GTGATCACTGTTACAGCTATGACGACCCAG : 30433 vulgar: AmOr107 0 50 . LHQN01017803.1 30582 30432 - 102 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 30433 30582 102 - . gene_id 13 ; sequence AmOr107 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 30433 30582 . - . LHQN01017803.1 exonerate:protein2genome:local exon 30433 30582 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 30433 30582 102 - . alignment_id 13 ; Query AmOr107 ; Align 30583 1 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr104 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 147 -> 233 Target range: 26231 -> 25976 148 : ValLeuPheLeuLeuValProLeuIlePheProPheLeuAspIleValHisProLeuAsn : 167 !.!||||||:!!! !:!!|||!!!:!:! |||.!!|||||||||:!! ||||||||| AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsn 26231 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAAC : 26174 168 : GluThrArgProArgGlnGlnLeuPheArgValAsnTyrLeuIlePheAsnHisAsnAsp : 187 ||||||||| !!||| ! :!!!:!! !!.! !!|||!!!:!! :!!.!.:!! ! GluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal---AspGluAspLys 26173 : GAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC---GACGAGGACAAA : 26117 188 : TyrPhePheTyrIleTyrLeuGlnLeuAlaTrpGlySerIleIleValValMetIleIle : 207 ||| !!:!! ||| !!!.:!! ! ! ! !:!!!!::!!:!! :!!.!! TyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPhe 26116 : TATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTC : 26057 208 : ValThrValAspSerLeuTyrMetIleIleIleHisHisSerSerGlyMetPheAlaMet : 227 !.!! !|||:!! !|||:!! ! !:!:!!.|||:!!!!!|||:!!!!.|||!!: CysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 26056 : TGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 25997 228 : CysGlyTyrLysValGln : 233 ...|||!! !|||||| AlaGly***LeuValGln 25996 : GCAGGGTAATTAGTTCAA : 25977 vulgar: AmOr104 147 233 . LHQN01017803.1 26231 25976 - 115 M 35 105 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25977 26231 115 - . gene_id 1 ; sequence AmOr104 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25977 26231 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25977 26231 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25977 26231 115 - . alignment_id 1 ; Query AmOr104 ; Align 26232 148 105 ; Align 26127 184 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 255 Query range: 128 -> 216 Target range: 26252 -> 25988 129 : ValMetValTyrSerCysAlaPheMetPheLeuValIleProThrIleProProIleLeu : 148 ||| :!!! ! !|||||| !:!:|||:!! !:!:||| !:!: !!||||||||| ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeu 26252 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTG : 26195 149 : AsnIleValAlaProLeuAsnValSerArgSerArgGluPheIleTyrProThrTyrTyr : 168 :!!|||:!! !|||||||||! !!!!|||:!!||| !|||:!!||||||.!!|||||| AspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyr 26194 : GACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTAT : 26135 169 : PheValAspGluGlnLysTyrTyrTyrProIleLeuThrHisMetIleAlaValIleLeu : 188 ||||||||||||.!.||||||:!!||| !|||:!! !|||||| ! !|||:!::!! PheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValVal 26134 : TTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTA : 26075 189 : ValLeuSerSerValTyrLeuAlaCysAspThrAsnLeuValGlnIleValHisHisGly : 208 :!!|||! !||||||!:!! !|||||||||.!!|||! !||| ! !|||!!.|||!.! MetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAla 26074 : ATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCT : 26015 209 : CysAlaLeuLeuAlaIleSerGly : 216 |||!.!||||||||||||:!!||| CysGlyLeuLeuAlaIleAlaGly 26014 : TGCGGATTGTTGGCCATTGCAGGG : 25989 vulgar: AmOr109 128 216 . LHQN01017803.1 26252 25988 - 255 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26252 255 - . gene_id 1 ; sequence AmOr109 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26252 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26252 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26252 255 - . alignment_id 1 ; Query AmOr109 ; Align 26253 129 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 240 Query range: 133 -> 216 Target range: 14179 -> 13930 134 : CysAlaPheMetPheLeuValIleProThrIleProProIleLeuAsnIleValAlaPro : 153 |||!.!.!!:!!|||:!! !! |||..!! !|||! !||||||:!!|||:!! !||| CysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuPro 14179 : TGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCG : 14122 154 : LeuAsnValSerArgSerArgGluPheIleTyrProThrTyrTyrPheValAspGluGln : 173 !|||! !||||||..! !! !!:!|||||||||.!!|||||||||..!||||||!!. LysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHis 14121 : AAGAACGAGTCACGAGACGTAGCGTACATTTATCCGGCCTATTATTTCACCGACGAGCAT : 14062 174 : LysTyrTyrTyrProIleLeuThrHisMetIleAlaValIleLeuValLeuSerSerVal : 193 |||||| !! !|||:!!||||||||| :!!||||||||||||:!!! !! !||| LysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrVal 14061 : AAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTG : 14002 194 : TyrLeuAlaCysAspThrAsnLeuValGlnIleValHisHisGlyCysAlaLeuLeuAla : 213 |||:!!||||||||||||!:!! !:!! ! :!!|||!!.|||||||||!.!||||||||| TyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAla 14001 : TACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCC : 13942 214 : IleSerGly : 216 :!:|||||| ValSerGly 13941 : GTGTCCGGg : 13931 vulgar: AmOr109 133 216 . LHQN01017803.1 14179 13930 - 240 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13931 14179 240 - . gene_id 2 ; sequence AmOr109 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13931 14179 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13931 14179 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13931 14179 240 - . alignment_id 2 ; Query AmOr109 ; Align 14180 134 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 230 Query range: 287 -> 386 Target range: 25492 -> 24881 288 : LeuSerThrMetGluValGlyIleArgPhePheThrPheCysAlaTyrThrIleAlaGln : 307 :!!||| ! ||| !! ! !..!!:: !!:!|||.!!!:! !! |||||| IleSerGluHisGluHisAspAlaGluTrpThrLeuTyrCysThrPhePheThrAlaGln 25492 : ATATCAGAACACGAACACGACGCAGAATGGACATTGTACTGCACGTTCTTCACGGCCCAG : 25435 308 : LeuIleHisLeuPhePheLeuThrIleMetGlyGlnPheLeuIleAsnAlaAsnGluGlu : 327 |||:!!|||:!!.!.||||||..!:!!..!|||||||||:!!:!::!!||| !!!!:!!: LeuLeuHisMetLeuPheLeuValValGlnGlyGlnPheValLeuAspAlaTyrAspAsp 25434 : TTGTTACACATGCTGTTCTTAGTCGTTCAGGGGCAGTTCGTGTTGGACGCGTACGACGAT : 25375 328 : ThrPheLysThr{Il} >>>> Target Intron 1 >>>> {e}TyrGluAlaAsp : 336 ..!!:!!!.|||{||} 314 bp {|}||||||:!! ValTyrAsnThr{Il}++ ++{e}TyrGluSerThr 25374 : GTTTATAATACG{AT}gt.........................ag{A}TACGAATCGACA : 25034 337 : TrpTyrAsnGlySerSerLysMetGlnSerLeuTyrValLeuValLeuArgLysCysLeu : 356 |||||||||..!|||!!!|||! !|||:!!||||||:!!|||!.!||||||!.. !!||| TrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeuArgSerSerLeu 25033 : TGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTACGGAGTAGCCTA : 24974 357 : SerProProLysLeuThrGlyGlyGlyPheValAlaLeuAsnLeuAspSerPheValGln : 376 !:!|||||| !||||||!.!|||||||||:!!.!!||||||||| ! !!!||| !:!! AsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLysThrPheSerGlu 24973 : AACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAGACCTTCTCAGAG : 24914 377 : IleLeuLysAlaSerPheSerTyrTyrThr : 386 :!! !!:! ! !.!...! !!|||:!! ValThrArgArgLeuIleGlnAspTyrSer 24913 : GTAACGAGGCGACTAATACAAGATTACTCG : 24882 vulgar: AmOr109 287 386 . LHQN01017803.1 25492 24881 - 230 M 44 132 S 0 2 5 0 2 I 0 310 3 0 2 S 1 1 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 24882 25492 230 - . gene_id 3 ; sequence AmOr109 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 25359 25492 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25359 25492 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 25357 25358 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 25045 25358 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 25045 25046 . - . intron_id 0 ; splice_site "aG" LHQN01017803.1 exonerate:protein2genome:local cds 24882 25044 . - . LHQN01017803.1 exonerate:protein2genome:local exon 24882 25044 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 24882 25492 230 - . alignment_id 3 ; Query AmOr109 ; Align 25493 288 132 ; Align 25044 333 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 200 Query range: 117 -> 247 Target range: 18483 -> 18093 118 : ArgArgThrThrAlaLeuCysAlaLeuTyrLysValMetValTyrSerCysAlaPheMet : 137 :::::: !.!!.!!||| ! !:!!!:! !|||! !.!|||! !|||:!!|||:!! LysGlnLeuAlaThrLeuAspArgIlePheProValAsnAlaTyrIleCysSerPheLeu 18483 : aaacaattAGCAACTCTCGATCGGATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTG : 18426 138 : PheLeuValIleProThrIleProProIleLeuAsnIleValAlaProLeuAsnValSer : 157 |||:!! !:!:||| ! !!! !:!::!!||| ! ! !!! !|||:!!!!! PheIleGlnValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIleThr 18425 : TTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACG : 18366 158 : ArgSerArgGluPheIleTyrProThrTyrTyrPheValAspGluGlnLysTyrTyrTyr : 177 ! !||| ! ! !!:!! ||| !|||||||||||||||||| !:!!||||||||| ProSerLeuProValValValProGlyTyrTyrPheValAspGluValGluTyrTyrTyr 18365 : CCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTAT : 18306 178 : ProIleLeuThrHisMetIleAlaValIleLeuValLeuSerSerValTyrLeuAlaCys : 197 !|||:!! !||| ! ..!..!||||||:!!:!! ! !||||||! !|||||| TyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCys 18305 : TACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 18246 198 : AspThrAsnLeuValGlnIleValHisHisGlyCysAlaLeuLeuAlaIleSerGlyTyr : 217 ||||||!:!! !:!! !:!:|||!!.||| !|||!.!|||!!!|||:!::!!|||! AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly*** 18245 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGGTGA : 18186 218 : HisPheLysHisAlaValAspAspValLysPheCysAspGlyTyrTyrIleAspAlaSer : 237 .!. ! !... ... :::...||| ...||| !!||| ! ! !!!! GluAsnLeuArgAspThrPhePheLeuSerPheSerSerGlyAsnTyrTyr***AspCys 18185 : GAAAACTTGAGagatacattttttctctcattttcgtCGGGAAACTATTATTGAGATTGC : 18126 238 : MetAspGluThrTyrValLysIleArgGln : 247 :!!!!:...:!! ! :!! !:!!!:!:!! ValGluArgSerGlnIleProLeuGlnGlu 18125 : GTGGAACGTTCGCAGATACCGCTTCAAGAA : 18094 vulgar: AmOr109 117 247 . LHQN01017803.1 18483 18093 - 200 M 130 390 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18094 18483 200 - . gene_id 4 ; sequence AmOr109 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18094 18483 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18094 18483 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18094 18483 200 - . alignment_id 4 ; Query AmOr109 ; Align 18484 118 390 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 149 Query range: 325 -> 377 Target range: 28677 -> 28521 326 : GluGluThrPheLysThrIleTyrGluAlaAspTrpTyrAsnGlySerSerLysMetGln : 345 :!!||| !||| !! !|||...||| ! |||||||||.!!||| !!!:!! !||| GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 28677 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 28620 346 : SerLeuTyrValLeuValLeuArgLysCysLeuSerProProLysLeuThrGlyGlyGly : 365 !!!||||||||||||!.!||||||!:! !!|||!!!|||||| !||||||!.!|||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 28619 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 28560 366 : PheValAlaLeuAsnLeuAspSerPheValGlnIle : 377 .!.:!!:!!|||||||||!!:!!!|||!.!:::::: LeuIleSerLeuAsnLeuGluThrPheAlaGluVal 28559 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGaggta : 28522 vulgar: AmOr109 325 377 . LHQN01017803.1 28677 28521 - 149 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 28522 28677 149 - . gene_id 5 ; sequence AmOr109 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 28522 28677 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28522 28677 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 28522 28677 149 - . alignment_id 5 ; Query AmOr109 ; Align 28678 326 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 145 Query range: 332 -> 377 Target range: 22422 -> 22287 333 : TyrGluAlaAspTrpTyrAsnGlySerSerLysMetGlnSerLeuTyrValLeuValLeu : 352 ||||||:!! |||||||||..!|||!!!|||! !|||:!!||||||:!!|||!.!||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeu 22422 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTA : 22365 353 : ArgLysCysLeuSerProProLysLeuThrGlyGlyGlyPheValAlaLeuAsnLeuAsp : 372 |||!.. !!|||!:!|||||| !||||||!.!|||||||||:!!.!!||||||||| ! ArgSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLys 22364 : CGGAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAG : 22305 373 : SerPheValGlnIle : 377 !!!||| !:!!:!! ThrPheSerGluVal 22304 : ACCTTCTCAGAGGTA : 22288 vulgar: AmOr109 332 377 . LHQN01017803.1 22422 22287 - 145 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 22288 22422 145 - . gene_id 6 ; sequence AmOr109 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 22288 22422 . - . LHQN01017803.1 exonerate:protein2genome:local exon 22288 22422 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 22288 22422 145 - . alignment_id 6 ; Query AmOr109 ; Align 22423 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 142 Query range: 332 -> 381 Target range: 12646 -> 12499 333 : TyrGluAlaAspTrpTyrAsnGlySerSerLysMetGlnSerLeuTyrValLeuValLeu : 352 |||.!.||| |||||||||.!!..!!.!!:!! !|||||||||!:!||||||!.!||| TyrAsnAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeu 12646 : TACAACGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCATTA : 12589 353 : ArgLysCysLeuSerProProLysLeuThrGlyGlyGlyPheValAlaLeuAsnLeuAsp : 372 |||!!.||||||||| !!|||:!!:!!|||!.!||||||.!.:!!.!!:!!||||||.!. ArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGln 12588 : AGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAA : 12529 373 : SerPheValGlnIleLeuLysAlaSer : 381 |||||| !:!!:!! !::::!!||| SerPheSerGluValThrArgSerSer 12528 : AGTTTCTCAGAGGTAACTCGTTCATCG : 12500 vulgar: AmOr109 332 381 . LHQN01017803.1 12646 12499 - 142 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 12500 12646 142 - . gene_id 7 ; sequence AmOr109 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 12500 12646 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12500 12646 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 12500 12646 142 - . alignment_id 7 ; Query AmOr109 ; Align 12647 333 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 0 -> 58 Target range: 26859 -> 26685 1 : MetAspGluArgAlaIleGluAspGlnTyrLeuLysIleAsnLysPhePheGlyGlnLeu : 20 ||||||! !! !.!!:!!||| ! !::||||||!:!||||||||| .!!|||..!||| MetAspAlaIleThrLeuGluLysArgTyrLeuArgIleAsnLysLysLeuGlyMetLeu 26859 : ATGGACGCGATCACGTTAGAGAAACGTTACTTGAGAATCAACAAGAAGCTCGGTATGCTA : 26802 21 : ValGlyValTrpProTyrGlnLysLysPhePheLysThrCysIleArgPheIleThrPhe : 40 ..!|||||||||||||||||||||!..! ||| ! !! !||| !:!!..!.!! ThrGlyValTrpProTyrGlnLysSerSerProLysTrpIleSerArgThrValValLeu 26801 : ACCGGTGTGTGGCCCTATCAAAAGAGCTCGCCAAAATGGATCAGTCGAACCGTAGTGCTC : 26742 41 : ThrIleMetIlePheSerLeuAlaThrGlnIleSerArgValIleValPheTyr : 58 !:!!!!:||| !!!!! !!.!||||||:!!...:::::: :::..!!:! PheValIleIleProCysTyrValThrGlnValGluLysIleArgIleIlePhe 26741 : TTTGTAATAATACCTTGTTACGTTACACAGGTAgaaaaaataaggattatCTTT : 26686 vulgar: AmOr109 0 58 . LHQN01017803.1 26859 26685 - 115 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 26686 26859 115 - . gene_id 8 ; sequence AmOr109 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 26686 26859 . - . LHQN01017803.1 exonerate:protein2genome:local exon 26686 26859 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 26686 26859 115 - . alignment_id 8 ; Query AmOr109 ; Align 26860 1 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 46 -> 92 Target range: 14595 -> 14457 47 : LeuAlaThrGlnIleSerArgValIleValPheTyrSerLeuAspValLeuSerAspGln : 66 ||| ! !|||:!!:!!!:!|||:!: !|||!:!|||||||||||||||! !|||||| LeuIleLeuGlnValAlaGlnValValCysPhePheSerLeuAspValLeuIleAspGln 14595 : TTGATCTTGCAGGTAGCACAAGTAGTGTGTTTCTTCAGTTTGGACGTTCTTATAGATCAA : 14538 67 : LeuProTyrIleAsnAlaGlyIleValThrLeuPheLysGlnTyrAsnTyrIleLeuAsn : 86 ||| !!!:!.!!..!||||||! !! !..!|||!!.|||||| |||||||||:!! ! LeuSerPhePheGlyAlaGlySerGlyValLeuLeuLysGlnGlyAsnTyrIleValPhe 14537 : CTATCATTTTTTGGTGCGGGAAGCGGGGTACTGTTGAAACAGGGGAACTACATCGTCTTT : 14478 87 : GluAspLysLeuArgGlu : 92 :!!!!::!!:!:...||| LysGluGluValAsnGlu 14477 : AAAGAGGAGGTgaatgaa : 14458 vulgar: AmOr109 46 92 . LHQN01017803.1 14595 14457 - 105 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 14458 14595 105 - . gene_id 9 ; sequence AmOr109 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 14458 14595 . - . LHQN01017803.1 exonerate:protein2genome:local exon 14458 14595 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 14458 14595 105 - . alignment_id 9 ; Query AmOr109 ; Align 14596 47 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 286 -> 326 Target range: 17703 -> 17583 287 : LysLeuSerThrMetGluValGlyIleArgPhePheThrPheCysAlaTyrThrIleAla : 306 :!!||||||||| !!!: !!! !||| !|||!:!! !!:!|||::!!:!|||:!:..! GlnLeuSerThrSerAspPheAspIleAspPheTyrArgTyrCysSerPheThrLeuCys 17703 : CAGCTGAGTACGTCGGATTTCGACATAGACTTCTACAGATATTGCAGTTTTACGTTGTGT : 17646 307 : GlnLeuIleHisLeuPhePheLeuThrIleMetGlyGlnPheLeuIleAsnAlaAsnGlu : 326 ||||||!!:||||||||| !!:!!! !:!!..!|||||||||:!!:!::!!:!! !||| GlnLeuMetHisLeuPheValIleMetLeuGlnGlyGlnPheValLeuAspSerCysGlu 17645 : CAACTGATGCACCTGTTCGTTATCATGCTTCAGGGACAGTTCGTGCTGGATTCGTGCGAG : 17586 vulgar: AmOr109 286 326 . LHQN01017803.1 17703 17583 - 100 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 17584 17703 100 - . gene_id 10 ; sequence AmOr109 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 17584 17703 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17584 17703 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 17584 17703 100 - . alignment_id 10 ; Query AmOr109 ; Align 17704 287 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 255 Query range: 130 -> 238 Target range: 14188 -> 13864 131 : ValIlePheSerAlaIleMetPheIleMetIleProThrIleProProIleLeuAsnIle : 150 !.!||| !!!!!!.!|||:!!|||:!: !! |||..!! !|||! !||||||:!!||| AlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIle 14188 : GCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATT : 14131 151 : IleMetProLeuAsnGluSerArgAspArgGluPheIleTyrProThrTyrPhePheIle : 170 :!!:!:||| !||||||||||||||| !! !!:!|||||||||.!!|||!:!|||! ! LeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThr 14130 : TTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTATCCGGCCTATTATTTCACC : 14071 171 : AspGluGluLysTyrTyrTyrProIleLeuThrTyrMetAlaThrValIleLeuIleVal : 190 ||||||.!.|||||| !! !|||:!!|||:!!||||||:!!|||||||||:!:||| AspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValVal 14070 : GACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTG : 14011 191 : SerSerValTyrLeuAlaCysAspThrAsnLeuValGlnIleValHisHisGlyCysAla : 210 ! !! !||||||:!!||||||||||||!:!! !:!! ! :!!|||!!.|||||||||!.! PheTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGly 14010 : TTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGA : 13951 211 : LeuLeuAlaIleSerGlyTyrHisPheLysHisAlaValAspAspMetLysPheSerAsn : 230 |||||||||:!:|||||| ...::: ... ! :!:!!. !! !!:! LeuLeuAlaValSerGly***LysIleArgSerAsnAspSer***LeuAsnProPheSer 13950 : TTGTTGGCCGTGTCCGGgtaaaaaattcgatcgaacgattCGTAGCTCAACCCTTTCAGT : 13891 231 : GlyAsnTyrIleAspLeuLeuMet : 238 !.!||| ! |||||| !|||!!: AlaAsnLysIleAspThrLeuIle 13890 : GCCAACAAAATCGATACGTTAATT : 13865 vulgar: AmOr108 130 238 . LHQN01017803.1 14188 13864 - 255 M 108 324 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13865 14188 255 - . gene_id 1 ; sequence AmOr108 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13865 14188 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13865 14188 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13865 14188 255 - . alignment_id 1 ; Query AmOr108 ; Align 14189 131 324 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 254 Query range: 276 -> 381 Target range: 12876 -> 12499 277 : IleValLeuAlaPheThrGlyThrPheLeuLysLeuSerThrMetGluIleGluIleArg : 296 :!::!!:!! ! ||| !..!!:: !:!!:!!|||!.! !||||||.!. ..! LeuIleIleLeuArgThrIleValTrpLysGlnValSerAsnSerGluIleAsnAlaGlu 12876 : CTGATCATCCTCAGAACAATTGTTTGGAAACAGGTGTCGAACTCGGAGATTAACGCGGAG : 12819 297 : PhePheThrPheCysGlyTyrThrValAlaGlnLeuThrHisLeuPhePheLeuThrIle : 316 ||| !! ! !||| !!:!! !||| !||||||..!|||:!!.!!!:!||||||:!! PheAlaLysAspCysThrPheIleValIleGlnLeuValHisIleLeuTyrLeuThrLeu 12818 : TTTGCCAAGGATTGCACATTTATCGTGATTCAATTGGTACACATACTTTACCTAACTCTT : 12759 317 : MetGlyGlnPheLeuIleAsnAlaAsnAspGluIlePheAsnThr{Il} >>>> Targ : 332 ...|||||||||:!!|||:!!||||||!!:|||||||||.!.:!!{||} GlnGlyGlnPheValIleAspAlaAsnGluGluIlePheGluSer{Il}++ 12758 : CAAGGACAATTCGTGATCGACGCGAACGAGGAAATCTTCGAATCG{AT}gt......... : 12707 333 : et Intron 1 >>>> {e}TyrGluAlaHisTrpTyrAsnGlySerSerArgThrGln : 345 62 bp {|}|||.!.||| |||||||||.!!..!!.!||||||||| ++{e}TyrAsnAlaLeuTrpTyrAsnSerAspLysArgThrGln 12706 : ................ag{A}TACAACGCTTTGTGGTATAACAGCGACAAGAGAACGCAA : 12610 346 : SerLeuTyrValLeuValLeuArgLysCysLeuAsnProProThrLeuThrGlyGlyGly : 365 ||||||!:!||||||!.!||||||!!.||||||::! !!||| !:!!|||!.!|||||| SerLeuPheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGly 12609 : TCGTTGTTTGTATTAGCATTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGA : 12550 366 : LeuIleValLeuAsnLeuAspSerPheValGlnIleLeuLysLeuSer : 381 ||||||..!:!!||||||.!.|||||| !:!!:!! !:::! !||| LeuIleThrMetAsnLeuGlnSerPheSerGluValThrArgSerSer 12549 : CTAATTACAATGAACTTGCAAAGTTTCTCAGAGGTAACTCGTTCATCG : 12500 vulgar: AmOr108 276 381 . LHQN01017803.1 12876 12499 - 254 M 55 165 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 12500 12876 254 - . gene_id 2 ; sequence AmOr108 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 12710 12876 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12710 12876 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 12708 12709 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 12648 12709 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 12648 12649 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 12500 12647 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12500 12647 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 12500 12876 254 - . alignment_id 2 ; Query AmOr108 ; Align 12877 277 165 ; Align 12647 333 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 248 Query range: 125 -> 240 Target range: 26261 -> 25916 126 : PheTyrGluValIleValIlePheSerAlaIleMetPheIleMetIleProThrIlePro : 145 ||| ! !||| !:!! !!.!!!||| !:!:|||!!: :!:||| !:!: !! PheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSer 26261 : TTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCG : 26204 146 : ProIleLeuAsnIleIleMetProLeuAsnGluSerArgAspArgGluPheIleTyrPro : 165 |||||||||:!!|||:!!|||||||||||||||!!!|||! ||| !|||:!!|||||| ProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrPro 26203 : CCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCA : 26144 166 : ThrTyrPhePheIleAspGluGluLysTyrTyrTyrProIleLeuThrTyrMetAlaThr : 185 .!!|||!:!|||:!!||||||!!:||||||:!!||| !|||:!! !:!!||| ! ! AlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeu 26143 : GCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTT : 26084 186 : ValIleLeuIleValSerSerValTyrLeuAlaCysAspThrAsnLeuValGlnIleVal : 205 |||:!::!!!!::!!! !||||||!:!! !|||||||||.!!|||! !||| ! !||| ValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaVal 26083 : GTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTG : 26024 206 : HisHisGlyCysAlaLeuLeuAlaIleSerGlyTyrHisPheLysHisAlaValAspAsp : 225 !!.|||!.!|||!.!||||||||||||:!!|||!! !!:!! !:!! !!: GlnHisAlaCysGlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGlu 26023 : CAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAA : 25964 226 : MetLysPheSerAsnGlyAsnTyrIleAspLeuLeuMetAspGlu : 240 ! ||| ! !! !!|||!:!:!!! !!!!! !:!:! !||| AsnGlyPheLeuTyrArgAsnPheValGlyPheCysLeuAlaGlu 25963 : AATGGTTTTCTTTATAGAAATTTCGTTGGCTTTTGTTTAGCTGAA : 25917 vulgar: AmOr108 125 240 . LHQN01017803.1 26261 25916 - 248 M 115 345 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25917 26261 248 - . gene_id 3 ; sequence AmOr108 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25917 26261 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25917 26261 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25917 26261 248 - . alignment_id 3 ; Query AmOr108 ; Align 26262 126 345 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 178 Query range: 117 -> 233 Target range: 18483 -> 18135 118 : ArgArgAlaThrThrLeuCysIlePheTyrGluValIleValIlePheSerAlaIleMet : 137 :::::: !.!!|||||| ! .!!!:! !|||! !!.! !.!!!!!:!!.!!:!! LysGlnLeuAlaThrLeuAspArgIlePheProValAsnAlaTyrIleCysSerPheLeu 18483 : aaacaattAGCAACTCTCGATCGGATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTG : 18426 138 : PheIleMetIleProThrIleProProIleLeuAsnIleIleMetProLeuAsnGluSer : 157 ||||||...:!:||| ! !!! !:!::!!||| !! ! !!! !||| !!!! PheIleGlnValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIleThr 18425 : TTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACG : 18366 158 : ArgAspArgGluPheIleTyrProThrTyrPhePheIleAspGluGluLysTyrTyrTyr : 177 ! !..! ! ! !!:!! ||| !|||!:!|||:!!||||||! !:!!||||||||| ProSerLeuProValValValProGlyTyrTyrPheValAspGluValGluTyrTyrTyr 18365 : CCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTAT : 18306 178 : ProIleLeuThrTyrMetAlaThrValIleLeuIleValSerSerValTyrLeuAlaCys : 197 !|||:!! !:!! .!! !..!|||||||||||| ! !||||||! !|||||| TyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCys 18305 : TACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 18246 198 : AspThrAsnLeuValGlnIleValHisHisGlyCysAlaLeuLeuAlaIleSerGlyTyr : 217 ||||||!:!! !:!! !:!:|||!!.||| !|||!.!|||!!!|||:!::!!|||! AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly*** 18245 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGGTGA : 18186 218 : HisPheLysHisAlaValAspAspMetLysPheSerAsnGlyAsnTyr : 233 .!. ! !... ... :::...||||||:::||||||||| GluAsnLeuArgAspThrPhePheLeuSerPheSerSerGlyAsnTyr 18185 : GAAAACTTGAGagatacattttttctctcattttcgtCGGGAAACTAT : 18136 vulgar: AmOr108 117 233 . LHQN01017803.1 18483 18135 - 178 M 116 348 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18136 18483 178 - . gene_id 4 ; sequence AmOr108 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18136 18483 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18136 18483 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18136 18483 178 - . alignment_id 4 ; Query AmOr108 ; Align 18484 118 348 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 160 Query range: 325 -> 377 Target range: 28677 -> 28521 326 : AspGluIlePheAsnThrIleTyrGluAlaHisTrpTyrAsnGlySerSerArgThrGln : 345 .!.|||:!:||| ! !! !|||...||| ! |||||||||.!!||| !!||||||||| GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 28677 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 28620 346 : SerLeuTyrValLeuValLeuArgLysCysLeuAsnProProThrLeuThrGlyGlyGly : 365 !!!||||||||||||!.!||||||!:! !!|||!.!|||||| !||||||!.!|||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 28619 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 28560 366 : LeuIleValLeuAsnLeuAspSerPheValGlnIle : 377 |||||| !|||||||||!!:!!!|||!.!:::::: LeuIleSerLeuAsnLeuGluThrPheAlaGluVal 28559 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGaggta : 28522 vulgar: AmOr108 325 377 . LHQN01017803.1 28677 28521 - 160 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 28522 28677 160 - . gene_id 5 ; sequence AmOr108 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 28522 28677 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28522 28677 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 28522 28677 160 - . alignment_id 5 ; Query AmOr108 ; Align 28678 326 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 150 Query range: 332 -> 386 Target range: 25043 -> 24881 333 : TyrGluAlaHisTrpTyrAsnGlySerSerArgThrGlnSerLeuTyrValLeuValLeu : 352 ||||||:!! |||||||||..!|||!!!!:!||||||:!!||||||:!!|||!.!||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeu 25043 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTA : 24986 353 : ArgLysCysLeuAsnProProThrLeuThrGlyGlyGlyLeuIleValLeuAsnLeuAsp : 372 |||!.. !!|||||||||||| !||||||!.!||||||!!!|||..!||||||||| ! ArgSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLys 24985 : CGGAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAG : 24926 373 : SerPheValGlnIleLeuLysLeuSerPheSerTyrTyrThr : 386 !!!||| !:!!:!! !!:!! ! !.!...! !!|||:!! ThrPheSerGluValThrArgArgLeuIleGlnAspTyrSer 24925 : ACCTTCTCAGAGGTAACGAGGCGACTAATACAAGATTACTCG : 24882 vulgar: AmOr108 332 386 . LHQN01017803.1 25043 24881 - 150 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 24882 25043 150 - . gene_id 6 ; sequence AmOr108 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 24882 25043 . - . LHQN01017803.1 exonerate:protein2genome:local exon 24882 25043 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 24882 25043 150 - . alignment_id 6 ; Query AmOr108 ; Align 25044 333 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 148 Query range: 332 -> 377 Target range: 22422 -> 22287 333 : TyrGluAlaHisTrpTyrAsnGlySerSerArgThrGlnSerLeuTyrValLeuValLeu : 352 ||||||:!! |||||||||..!|||!!!!:!||||||:!!||||||:!!|||!.!||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeu 22422 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTA : 22365 353 : ArgLysCysLeuAsnProProThrLeuThrGlyGlyGlyLeuIleValLeuAsnLeuAsp : 372 |||!.. !!|||||||||||| !||||||!.!||||||!!!|||..!||||||||| ! ArgSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLys 22364 : CGGAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAG : 22305 373 : SerPheValGlnIle : 377 !!!||| !:!!:!! ThrPheSerGluVal 22304 : ACCTTCTCAGAGGTA : 22288 vulgar: AmOr108 332 377 . LHQN01017803.1 22422 22287 - 148 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 22288 22422 148 - . gene_id 7 ; sequence AmOr108 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 22288 22422 . - . LHQN01017803.1 exonerate:protein2genome:local exon 22288 22422 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 22288 22422 148 - . alignment_id 7 ; Query AmOr108 ; Align 22423 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 323 -> 377 Target range: 17190 -> 17028 324 : AlaAsnAspGluIlePheAsnThrIleTyrGluAlaHisTrpTyrAsnGlySerSerArg : 343 .!!..!|||!!:! ! !.!:!!! !||||||:!! ||||||!...!!||||||!:! ThrArgAspAspAsnGluThrSerArgTyrGluSerLeuTrpTyrThrSerSerSerLys 17190 : ACACGCGATGATAATGAAACTTCCAGATACGAATCATTATGGTACACAAGTTCTTCGAAA : 17133 344 : ThrGlnSerLeuTyrValLeuValLeuArgLysCysLeuAsnProProThrLeuThrGly : 363 ||||||:!!|||||||||:!!!.!||||||!:! !|||!..||| !! !||||||!.! ThrGlnAlaLeuTyrValValAlaLeuArgArgAsnLeuThrProThrCysLeuThrAla 17132 : ACACAAGCATTATACGTGGTAGCGTTACGAAGAAACCTAACACCTACCTGTTTAACGGCT : 17073 364 : GlyGlyLeuIleValLeuAsnLeuAspSerPheValGlnIle : 377 |||||||||:!: !||||||:!!.!.||||||!.!:!!:!! GlyGlyLeuValGlnLeuAsnMetGlnSerPheAlaGluVal 17072 : GGCGGTTTAGTGCAACTGAACATGCAAAGCTTCGCAGAGGTA : 17029 vulgar: AmOr108 323 377 . LHQN01017803.1 17190 17028 - 135 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 17029 17190 135 - . gene_id 8 ; sequence AmOr108 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 17029 17190 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17029 17190 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 17029 17190 135 - . alignment_id 8 ; Query AmOr108 ; Align 17191 324 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 129 Query range: 120 -> 205 Target range: 33738 -> 33483 121 : ThrThrLeuCysIlePheTyrGluValIleValIlePheSerAlaIleMetPheIleMet : 140 :!!..!|||! ||| ! !..!|||! !:!! !.!!.!!!.! !:!!||| !! SerValLeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThr 33738 : TCCGTTTTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACC : 33681 141 : IleProThrIleProProIleLeuAsnIleIleMetProLeuAsnGluSerArgAspArg : 160 ||| !|||||| !||||||:!!:!!||| |||||||||||||||||| ||| AlaProLeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArg 33680 : GCGCCCCTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGT : 33621 161 : GluPheIleTyrProThrTyrPhePheIleAspGluGluLysTyrTyrTyrProIleLeu : 180 !!:! !||| !.!!|||! !!:!.!!:!! !!!: ! ||||||||| !:!!:!! LeuTyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValVal 33620 : TTGTACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTG : 33561 181 : ThrTyrMetAlaThrValIleLeuIleValSerSerValTyrLeuAlaCysAspThrAsn : 200 !|||! ::!.!! !||| !!!:!.!.!! !||| !:!!!.!..!|||! !! ! GlyTyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAlaAspIleIle 33560 : GGGTACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATT : 33501 201 : LeuValGlnIleVal : 205 :!!:!!!!.:!!||| MetIleHisLeuVal 33500 : ATGATACATCTTGTA : 33484 vulgar: AmOr108 120 205 . LHQN01017803.1 33738 33483 - 129 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33484 33738 129 - . gene_id 9 ; sequence AmOr108 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33484 33738 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33484 33738 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33484 33738 129 - . alignment_id 9 ; Query AmOr108 ; Align 33739 121 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 0 -> 54 Target range: 26859 -> 26697 1 : MetAsnLysGlnAlaIleGluAspGlnTyrLeuArgIleAsnLysPhePheGlyGlnLeu : 20 |||:!! ! .!!:!!||| ! !::|||||||||||||||||| .!!|||..!||| MetAspAlaIleThrLeuGluLysArgTyrLeuArgIleAsnLysLysLeuGlyMetLeu 26859 : ATGGACGCGATCACGTTAGAGAAACGTTACTTGAGAATCAACAAGAAGCTCGGTATGCTA : 26802 21 : ValGlyValTrpProTyrGlnGluArgPheThrLysPheCysIleArgLeuThrIlePhe : 40 ..!||||||||||||||||||:!!!!!! !!|||!:: !! !||| !..!:!:.!! ThrGlyValTrpProTyrGlnLysSerSerProLysTrpIleSerArgThrValValLeu 26801 : ACCGGTGTGTGGCCCTATCAAAAGAGCTCGCCAAAATGGATCAGTCGAACCGTAGTGCTC : 26742 41 : AlaIleIleIleLeuThrLeuThrThrGlnIleTyrGlnVal : 54 !:!!||||||! ! !! !..!||||||:!! :::::: PheValIleIleProCysTyrValThrGlnValGluLysIle 26741 : TTTGTAATAATACCTTGTTACGTTACACAGGTAgaaaaaata : 26698 vulgar: AmOr108 0 54 . LHQN01017803.1 26859 26697 - 113 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 26698 26859 113 - . gene_id 10 ; sequence AmOr108 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 26698 26859 . - . LHQN01017803.1 exonerate:protein2genome:local exon 26698 26859 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 26698 26859 113 - . alignment_id 10 ; Query AmOr108 ; Align 26860 1 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr102 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 142 -> 233 Target range: 26246 -> 25976 143 : LeuLeuIleAlaLeuValLeuPheLeuLeuIleProLeuIleSerProMetLeuAspVal : 162 :!!! !:!!..! !!.!||||||:!!! !:!:|||!!!:!:||||||!!:||||||:!! IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIle 26246 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATC : 26189 163 : PheLeuProLeuAsnGluThrArgProArgGlnGlnLeuLeuLysValAsnTyrLeuVal : 182 .!!:!!|||||||||||||||||| !!||| ! :!!! ! !!.! !!|||!!!||| LeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal 26188 : CTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC : 26129 183 : PheAsnAspAspAspTyrPhePheTyrValTyrLeuGlnLeuAlaTrpGlySerIleIle : 202 :!!!!:||| ! ||| !!:!! :!! !!!.:!! ! ! ! !:!!!!: ---AspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMet 26128 : ---GACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATG : 26072 203 : ValValValThrSerValAlaValAspSerLeuLeuIleLeuIleIleHisHisCysSer : 222 :!!:!! !..!! ! !||| !|||:!! !! !:!:! ! !:!:!!.|||..!!!! LeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCys 26071 : CTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGC : 26012 223 : GlyLeuPheThrValCysGlyTyrGlnValGln : 233 ||||||!!..!!:!!...|||!! !|||||| GlyLeuLeuAlaIleAlaGly***LeuValGln 26011 : GGATTGTTGGCCATTGCAGGGTAATTAGTTCAA : 25977 vulgar: AmOr102 142 233 . LHQN01017803.1 26246 25976 - 121 M 40 120 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25977 26246 121 - . gene_id 1 ; sequence AmOr102 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25977 26246 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25977 26246 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25977 26246 121 - . alignment_id 1 ; Query AmOr102 ; Align 26247 143 120 ; Align 26127 184 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr102 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 141 -> 192 Target range: 33711 -> 33561 142 : AlaLeuLeuIleAlaLeuValLeuPheLeuLeuIleProLeuIleSerProMetLeuAsp : 161 .!!:!!! !|||!.!:!! !:!!|||! ! ! ||||||||| !! !!!:|||||| ThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeuAsp 33711 : ACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTGGAC : 33654 162 : ValPheLeuProLeuAsnGluThrArgProArgGlnGlnLeuLeuLysValAsnTyrLeu : 181 :!!.!!! !||||||||||||:!!||||||||| ! ! !! !|||!.! |||! ! LeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAla---TyrCys 33653 : CTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCC---TACTGT : 33597 182 : ValPheAsnAspAspAspTyrPhePheTyrVal : 192 !|||||| |||||||||!:!!:!|||||| TyrPheAsnProAspAspTyrTyrTyrTyrVal 33596 : TACTTCAATCCGGACGACTACTATTATTACGTC : 33562 vulgar: AmOr102 141 192 . LHQN01017803.1 33711 33561 - 101 M 37 111 G 1 0 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33562 33711 101 - . gene_id 2 ; sequence AmOr102 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33562 33711 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33562 33711 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 33562 33711 101 - . alignment_id 2 ; Query AmOr102 ; Align 33712 142 111 ; Align 33601 180 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr99 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 151 -> 248 Target range: 26228 -> 25940 152 : LeuPheLeuValValProLeuValSerProIleLeuAspIleValHisProLeuAsnGln : 171 ||||||:!! !:!!|||!!!|||||||||||||||||||||:!! |||||||||:!! LeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGlu 26228 : CTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAG : 26171 172 : ThrArgSerArgGlnGlnLeuLeuArgValAsnTyrIleValPheAspIleAspAspTyr : 191 ||||||:!!||| ! :!!! !! !!.! !!|||.!!||| ||| ||| ! ||| ThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal---AspGluAspLysTyr 26170 : ACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC---GACGAGGACAAATAT : 26114 192 : PhePheTyrValTyrLeuGlnLeuAlaTrpGlySerIleIleValValLeuThrIleIle : 211 !!:!! :!! !!!.:!! ! ! ! !:!!!!::!!:!!! !..!.!! ! HisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCys 26113 : CATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGC : 26054 212 : AlaAlaAspTrpPheTyrIleLeuIleIleHisPheAsnSerGlyLeuPheAlaValCys : 231 |||..!||| !|||:!:! ! !:!:!!. ! !!!!||||||!!.|||:!!... AlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla 26053 : GCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCA : 25994 232 : GlyValGlnValLeuGluAlaThrMetAsnSerAsnLeuIleSerLysAsp : 248 ||| ! !|||! !! ! ! !|||.!.!:!..!!!!:!!! !!:!:!! Gly***LeuValGlnGlyGlnLeuMetGluAsnGlyPheLeuTyrArgAsn 25993 : GGGTAATTAGTTCAAGGACAATTAATGGAAAATGGTTTTCTTTATAGAAAT : 25941 vulgar: AmOr99 151 248 . LHQN01017803.1 26228 25940 - 117 M 34 102 G 1 0 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25941 26228 117 - . gene_id 1 ; sequence AmOr99 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25941 26228 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25941 26228 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25941 26228 117 - . alignment_id 1 ; Query AmOr99 ; Align 26229 152 102 ; Align 26127 187 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr119 Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 273 -> 415 Target range: 4394989 -> 4395883 274 : LeuValValIleSerArgAspTyrAsnLysIleTyrSerLeuSerMetLeuValGl : 292 ||| ! !:!! !!.!||| |||...::: ::: !! !!!:!!!:!!|| LeuTyrSerValValAsnAspValAsnAsnLeuLeuThrProIleIlePheMetGl 4394990 : TTATACAGCGTTGTGAACGacgtgaataatttattaacaccCATCATTTTCATGCA : 4395044 293 : nMetIleSerSerThrSerIleIleCysLeuThrGlyPheGlnAlaValValValG : 311 |:!::!!!!!||| !! ! |||||||||!:!|||||| ||||||:!!! !. nLeuLeuThrSerGlyIleGluIleCysLeuSerGlyPhe---AlaValIleAspA 4395045 : ACTTCTTACGAGCGGAATAGAGATTTGTTTGAGTGGATTC---GCGGTGATCGATA : 4395098 312 : lyGlyGlnSerSerAsnIleMetLysTyrGlyIleTyrLeuSerAlaAlaMetSer : 329 .!||| .!!!!!:!!:!!:!:|||!:!! ! !||||||!!!:!! ! ! ! snGlyThrGlyThrAspLeuLeuLysPheValSerTyrLeuThrSerMetGlyVal 4395099 : ACGGCACCGGTACCGATCTTCTCAAATTTGTGTCTTATTTAACCTCGATGGGGGTG : 4395152 330 : GlnLeuPheTyrIleCysTrpLeuGlyAsnGluLeuGlyTyrAlaSerSerThrLe : 348 ||||||!!. ||||||! !|||.!. |||! ! ! ! !|||! ! !:! GlnLeuLeuLeuTrpCysTrpProGlyGluIleLeuValGlnGluSerLeuGluIl 4395153 : CAACTTTTGCTATGGTGTTGGCCTGGTGAAATTCTCGTTCAAGAGAGTTTAGAAAT : 4395209 349 : uAspLysAsnGlnTrpPheSerGlyTrpCysAsnGluArgLeuThrGlyIleGlyG : 367 !! ! ! !::.!.!:! ! !! !!.!. !! ! !! ! ! !: eGlyHisValValTyrLeuAsnIleProTrpTyrAsnLeuProProIleTyrGlnL 4395210 : AGGTCATGTAGTCTATCTAAATATACCATGGTACAATTTACCACCGATTTATCAGA : 4395266 368 : lnValPheThrLeuSerThrValPheThrArgLysSerIleIleLeuArgAlaSer : 385 !! !.!! !|||! !! !:!! .!!!:!:!!! ! !! !:!!! !|||! ! ysGlnLeuCysLeuMetIleIleArgAlaGlnGlnTyrCysSerIleThrAlaLeu 4395267 : AACAACTTTGCCTGATGATCATTAGGGCCCAACAGTATTGCAGCATTACGGCATTA : 4395320 386 : ValPheTyrValLeuSerLeuGluThrPheIleAla >>>> Target Intron : 398 ..!||| ! ..!||||||:!!.!.|||!!.! !||| 471 bp ThrPheGlnThrLeuSerIleHisThrLeuThrAla++ 4395321 : ACGTTTCAAACGTTGTCTATTCACACGTTAACAGCCgt.................. : 4395361 399 : 1 >>>> IleIleLysArgSerTyrSerPhePheThrLeuLeuAsnAsnMetAs : 413 :!!.!!!!.! !:!! !|||!:!||||||||||||....!.|||.! ++ValPheAsnThrAlaAlaSerTyrPheThrLeuLeuArgGlnMetGl 4395362 : .......agGTATTCAATACAGCTGCTTCGTATTTTACTTTGCTGCGACAAATGCA : 4395875 414 : pLeuThr : 415 .! !||| nGlnThr 4395876 : GCAAACG : 4395883 vulgar: AmOr119 273 415 . KQ414784.1 4394989 4395883 + 102 M 32 96 G 1 0 M 91 273 5 0 2 I 0 467 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4394990 4395883 102 + . gene_id 1 ; sequence AmOr119 ; gene_orientation + KQ414784.1 exonerate:protein2genome:local cds 4394990 4395358 . + . KQ414784.1 exonerate:protein2genome:local exon 4394990 4395358 . + . insertions 0 ; deletions 1 KQ414784.1 exonerate:protein2genome:local splice5 4395359 4395360 . + . intron_id 1 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4395359 4395829 . + . intron_id 1 KQ414784.1 exonerate:protein2genome:local splice3 4395828 4395829 . + . intron_id 0 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4395830 4395883 . + . KQ414784.1 exonerate:protein2genome:local exon 4395830 4395883 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local similarity 4394990 4395883 102 + . alignment_id 1 ; Query AmOr119 ; Align 4394990 274 96 ; Align 4395086 307 273 ; Align 4395830 398 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr118 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 302 -> 356 Target range: 34381 -> 34543 303 : LysSerGluAsnIleAsnLysAlaValTyrAsnPheLeuTrpTyrAsnLeuLysProArg : 322 :!!|||..!.!.!!:!:!!!.:!!!.!|||.!.! !|||||||||:!!..!|||! ! GlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProPro 34382 : CAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCA : 34439 323 : AspValArgIleMetLeuMetIleIleLeuArgSerGlnLysGlnLeuThrLeuThrAla : 342 !!:!.!!:! !:!:|||.!.|||!!:! !|||!!! :::! !||| !||||||||| GluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAla 34440 : GAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCA : 34499 343 : GlyLysPheIleCysLeuSerLeuGluAlaPheAlaAsnMet : 356 |||||||||! ! !!!!|||:!!||| !|||::!!.!:!: GlyLysPheSerThrPheSerMetGluMetPheSerThrVal 34500 : GGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTGTA : 34543 vulgar: AmOr118 302 356 . KQ414804.1 34381 34543 + 105 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34382 34543 105 + . gene_id 1 ; sequence AmOr118 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 34382 34543 . + . KQ414804.1 exonerate:protein2genome:local exon 34382 34543 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34382 34543 105 + . alignment_id 1 ; Query AmOr118 ; Align 34382 303 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr115 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 1171 Query range: 0 -> 329 Target range: 35906 -> 37940 1 : MetAspPheAlaMetGlyTrpAsnArgPheAsnLeuThrLeuLeuGlyValTyrProGlu : 20 ||||||||||||||||||||||||||||||!:!|||:!!:!!|||||||||!::|||||| MetAspPheAlaMetGlyTrpAsnArgPheSerLeuSerValLeuGlyValTrpProGlu 35907 : ATGGATTTTGCTATGGGATGGAATCGTTTCAGTTTATCTGTACTTGGCGTGTGGCCAGAA : 35964 21 : ProArgLysMetSerArgAsnSerArgLeuMetSerSerLeuIlePheTrpPheThrThr : 40 |||||||||||||||!.! ||||||!!! !|||!:!!!!|||||||||||||||||| ProArgLysMetSerAsnLeuSerArgPheAlaSerAsnPheIlePheTrpPheThrThr 35965 : CCGAGAAAGATGTCTAACCTGTCACGATTCGCGTCTAACTTTATATTCTGGTTCACGACT : 36024 41 : LeuValThrPheThrPheIleCysAlaProGlnThrAlaAsnLeuIleLeuLysSerThr : 60 |||:!!||| !!..!||||||||||||||||||! !.!!:!!|||:!!|||||||||||| LeuIleThrValValPheIleCysAlaProGlnMetThrHisLeuValLeuLysSerThr 36025 : TTGATAACGGTTGTCTTCATATGCGCTCCCCAAATGACGCATTTGGTAttaaaatcgacg : 36084 61 : SerLeuAspGluValIleGluAsnLeuSerIleAsnIleProIleValPheAlaLeuIle : 80 :::|||||||||||||||||||||||||||:!!|||||||||!!::!!|||:!!||| ! AsnLeuAspGluValIleGluAsnLeuSerValAsnIleProMetLeuPheSerLeuGly 36085 : aatttgGACGAGGTGATAGAGAATCTGTCGGTCAACATACCGATGCTCTTCTCATTGGGC : 36144 81 : LysGlnIleValLeuArgTyrTyrLysLys{A} >>>> Target Intron 1 >>>> : 91 |||||||||:!!||||||||| !!:!|||{|} 381 bp LysGlnIleIleLeuArgTyrArgArgLys{A}++ 36145 : AAGCAAATCATTCTGCGTTATCGTAGAAAA{G}gt......................... : 36180 92 : {la}LeuThrGluLeuLeuGlyGluMetLeuAlaAspTrpSerGlyProIleGlyAsp : 109 {||}|||..! |||:!!.!!:!!!!:!!!! !||||||:!!! !|||||| !!!: ++{la}LeuValPheLeuMetSerGlnIlePheAspAspTrpAlaGluProIleProGlu 36181 : ag{CG}CTAGTATTCTTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAG : 36612 110 : GlnAspArgGluThrMetLeuArgAsnAlaArgLeuSerArgAlaIleSerIleValCys : 129 !||||||.!.|||||||||!:!!.!|||!:!:!!|||||| !||||||||||||||| ValAspArgHisThrMetLeuLysThrAlaLysIleSerArgMetIleSerIleValCys 36613 : GTGGATCGCCACACGATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTCTGT : 36672 130 : SerThrLeuThrTyrPheMetLeuLeuAlaPheValSerLeuGlnValTrpSerAsnAla : 149 |||! !||||||||| !!|||:!!|||||||||:!!|||||||||:!!||||||!:! ! SerIleLeuThrTyrValMetValLeuAlaPheLeuSerLeuGlnIleTrpSerSerMet 36673 : TCTATCCTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGCAGCATG : 36732 150 : GluAsnAlaSerGluThrAspLeuGlyGlyLeuLeuHisProAlaThrPheProTyrGlu : 169 :!!|||.!!|||||| !:!!:!!|||||||||||| !||||||||||||||||||!!: GlnAsnThrSerGluPheAsnValGlyGlyLeuLeuIleProAlaThrPheProTyrAsp 36733 : CAAAACACCTCGGAGTTCAACGTAGGAGGACTACTTATCCCGGCCACATTTCCATACGAC : 36792 170 : ThrSerLysSerProAsnTyrGluIleThrTrpLeuGlyGlnLeuMetGlyThrValLeu : 189 |||!:!||||||||||||||||||||||||||||||||||||!!!:!!|||||||||||| ThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrValLeu 36793 : ACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTG : 36852 190 : ThrAlaIleCysTyrSerCysPheAspThrPheLeuAlaValLeuValLeuHisLeuCys : 209 !:!||||||||||||||||||||||||||||||:!!||||||||||||||||||:!!||| SerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHisIleCys 36853 : AGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGC : 36912 210 : GlyGlnLeuThrValLeuGlyThrAlaLeuGluAspLeuValAsnAlaThrArgArgAsn : 229 |||||||||||||||||| !!! !|||||||||:!!|||!.!|||.!!|||! !!:!:!! GlyGlnLeuThrValLeuArgIleAlaLeuGluAsnLeuAlaAsnThrThrIleLysAsp 36913 : GGCCAATTAACTGTTCTCCGCATTGCCCTCGAGAATCTTGCTAACACGACAATAAAAGAC : 36972 230 : AspTyrLysThrPheGluGlnArgLeuSerSerIleValAsnArgHisAsnHisLeuSer : 249 :!!|||!..! !|||:!!:!!||||||.!!! !||||||:!!|||!!.|||!!.|||! ! AsnTyrSerLysPheGlnGluArgLeuGlyTyrIleValHisArgGlnAsnGlnLeuPhe 36973 : AACTACAGCAAGTTCCAAGAACGATTAGGATACATTGTGCACAGGCAGAATCAATTGTTC : 37032 250 : {Ar} >>>> Target Intron 2 >>>> {g}PheAlaValIleValGluAspCys : 258 {||} 534 bp {|}::!||||||||||||||||||||| {Ar}++ ++{g}TyrAlaValIleValGluAspCys 37033 : {AG}gt.........................ag{g}taCGCTGTGATAGTGGAAGATTGC : 37593 259 : PheAsnIleThrLeuLeuValGlnThrLeuIleCysThrAlaMetPheCysLeuThrGly : 278 |||||||||! !||||||||||||||||||!!:||||||||||||.!!|||:!!|||||| PheAsnIleMetLeuLeuValGlnThrLeuMetCysThrAlaMetLeuCysMetThrGly 37594 : TTCAACATCATGCTGCTCGTTCAAACTTTAATGTGCACCGCCATGCTCTGTATGACTGGA : 37653 279 : TyrArgMetIleThr >>>> Target Intron 3 >>>> SerValAspArgGluA : 289 |||||||||!!:||| 135 bp ||||||:!!!:!|||. TyrArgMetMetThr++ ++SerValAsnGlnGluG 37654 : TATCGCATGATGACCgt.........................agTCTGTTAATCAGGAGC : 37821 290 : spGluAlaAspValProIleValGlyIleIlePhePheIleIleHisValIleTyrThrM : 309 !.||| ||||||||||||:!!|||:::|||||||||||| ||||||! !||||||| lnGlu---AspValProIleIleGlyValIlePhePheIleSerHisValThrTyrThrM 37822 : AAGAG---GATGTACCGATTATTggagtaatattttttatctcaCACGTGACCTATACCA : 37878 310 : etLeuHisLeuPheIleTyrCysTyrValGlyGluThrLeuLeuGlyGlnSerThrGlyI : 329 |||||||||||||||||||||||||||||||||||||||||||||||||| !!:!!.!: etLeuHisLeuPheIleTyrCysTyrValGlyGluThrLeuLeuGlyGlnValSerAlaL 37879 : TGTTAcatctatttatttattgctacgtGGGCGAAACACTTCTTGGACAAGTGAGTGCTC : 37938 330 : le : 329 !! eu 37939 : TA : 37940 vulgar: AmOr115 0 329 . KQ414804.1 35906 37940 + 1171 M 90 270 S 0 1 5 0 2 I 0 377 3 0 2 S 1 2 M 158 474 S 0 2 5 0 2 I 0 530 3 0 2 S 1 1 M 33 99 5 0 2 I 0 131 3 0 2 M 7 21 G 1 0 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 35907 37940 1171 + . gene_id 1 ; sequence AmOr115 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 35907 36177 . + . KQ414804.1 exonerate:protein2genome:local exon 35907 36177 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 36178 36179 . + . intron_id 1 ; splice_site "gt" KQ414804.1 exonerate:protein2genome:local intron 36178 36558 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 36557 36558 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 36559 37036 . + . KQ414804.1 exonerate:protein2genome:local exon 36559 37036 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 37037 37038 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 37037 37570 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 37569 37570 . + . intron_id 1 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 37571 37670 . + . KQ414804.1 exonerate:protein2genome:local exon 37571 37670 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 37671 37672 . + . intron_id 3 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 37671 37805 . + . intron_id 3 KQ414804.1 exonerate:protein2genome:local splice3 37804 37805 . + . intron_id 2 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 37806 37940 . + . KQ414804.1 exonerate:protein2genome:local exon 37806 37940 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 35907 37940 1171 + . alignment_id 1 ; Query AmOr115 ; Align 35907 1 270 ; Align 36561 92 474 ; Align 37572 251 99 ; Align 37806 284 21 ; Align 37827 292 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr115 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 281 Query range: 0 -> 249 Target range: 30788 -> 31605 1 : MetAspPheAlaMetGlyTrpAsnArgPheAsnLeuThrLeuLeuGlyValTyrProGlu : 20 :!! ! ! |||:!:||||||||||||!::|||:!! !|||:!!|||:!!!::|||||| LeuLysValAlaLeuGlyTrpAsnArgTrpAsnMetGluLeuValGlyIleTrpProGlu 30789 : TTGAAGGTAGCACTTGGATGGAACCGTTGGAACATGGAACTGGTTGGAATTTGGCCAGAA : 30846 21 : ProArgLysMetSerArgAsnSerArgLeuMetSerSerLeuIlePheTrpPheThrThr : 40 |||!!!!:! ..!!:!...!!!! ! !.!.!.!:!!|||:!:||| ||| ProSerArgSerAspGlnArgTrpProAsnPheLysAlaLeuLeuPheIlePhe------ 30847 : CCGAGCAGATCTGATCAACGATGGCCGAATTTCAAGGCTTTGCTGTTCATTTTT------ : 30903 41 : LeuValThrPheThrPheIleCysAlaProGlnThrAlaAsnLeuIleLeuLysSerThr : 60 ||| ... ||| !!.!||||||!:!!.!||||||:!!!!!! !!!! ! ---ValIleIlePhePheGlyThrGlyProGlnSerValAsnLeuLeuPheIleTrpGly 30904 : ---GtgataatattttttggaaCCGGACCTCAGAGCGTGAATCTACTTTTCATATGGGGA : 30957 61 : SerLeuAspGluValIleGluAsnLeuSer<->IleAsnIleProIleValPheAlaLeu : 79 ..!|||! !|||! |||||||||||| !||||||||| !:!! !|||:!! AspLeuGlyLeuValThrGluAsnLeuSerThrAlaAsnIleProGlyIleAsnAlaMet 30958 : GACCTTGGATTGGTCACGGAAAATCTGTCCACGGCTAATATTCCCGGCATAAACGCCATG : 31017 80 : IleLysGlnIleValLeuArgTyrTyrLysLys{A} >>>> Target Intron 1 > : 91 !!:|||! !|||:!! ! !!:!!:!!!:! ! {|} 67 bp MetLysLeuIleIleAlaTrpHisHisArgAsp{A}++ 31018 : ATGAAACTGATTATCGCCTGGCATCACAGAGAT{G}gt...................... : 31056 92 : >>> {la}LeuThrGluLeuLeuGlyGluMetLeuAlaAspTrpSerGlyProIleGly : 108 {||}.!!! ! :!!:!! !....!.! !! !||||||!.! ! !!! ++{la}PheLysProValIleLysSerPheTyrAspAspTrpLysThrSerArgThr 31057 : ...ag{ct}tTCAAGCCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACc : 31171 109 : AspGlnAspArgGluThrMetLeuArgAsnAlaArgLeuSerArgAlaIleSerIleVal : 128 :::::::::||||||||||||!:!!..|||!:!!!!:!!!:! !||||||||| ! LysGluGluLysGluThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIleTrp 31172 : aaggaggagaaggagacCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGG : 31231 129 : CysSerThrLeuThrTyrPheMetLeuLeuAlaPheValSerLeuGlnValTrp<-><-> : 147 ||||||..!||||||! !|||:!! !!.!!:!:!!||||||!:!!.!||| CysSerValLeuThrLeuThrMetValThrValTyrLeuSerLeuArgAlaTrpIleIle 31232 : TGCTCAGTATTAACCTTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATC : 31291 148 : SerAsnAlaGluAsnAlaSerGluThrAspLeuGlyGlyLeuLeuHisProAlaThrPhe : 166 ! !.!. !!!:!..|||!:!:!!! !.!. ! !! !||||||:!!|||!.! !||| TyrGlnLeuAspArgAlaAsnGlnLysGlnAspArgLeuLeuLeuTyrProGlyTyrPhe 31292 : TACCAGCTTGATAGGGCAAACCAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTATTTT : 31351 167 : ProTyrGluThrSerLysSerProAsnTyrGluIleThrTrpLeuGlyGlnLeuMetGly : 186 |||!:!!!:! ! !! !! ! ! ! ||| !!!||||||:!!:!:!.! ProPheAspIleArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeuAla 31352 : CCCTTCGATATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCA : 31411 187 : ThrValLeuThrAlaIleCysTyrSerCysPheAspThrPheLeuAlaValLeuValLeu : 206 .!! !! !.!!!.!||| !!|||!!! ! ! |||||||||:!!|||:!!|||:!!:!! AlaTyrSerAlaValIleSerTyrThrThrValAspThrPheIleAlaMetLeuIleMet 31412 : GCGTATTCCGCTGTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATAATG : 31471 207 : HisLeuCysGlyGlnLeuThrValLeuGlyThrAlaLeuGluAspLeuValAsnAlaThr : 226 |||:!!|||||||||!!! !:!!||| !! ! !|||..! |||:!!:!!! ! ! HisIleCysGlyGlnPheGluIleLeuArgGlnLysLeuArgArgLeuMetAspAspGlu 31472 : CACATATGCGGACAATTTGAGATACTGAGACAGAAATTACGAAGGCTGATGGATGACGAG : 31531 227 : ArgArg<->AsnAspTyrLysThrPheGluGlnArgLeuSerSerIleValAsnArgHis : 245 !:!!:! !....! ! !.!!:!!:!!..!||| !! !|||:!!.!.|||||| LysLysThrArgSerValAspGluIleGlnLysGluLeuValLeuIleIleGluArgHis 31532 : AAGAAGACCAGAAGCGTGGATGAGATTCAGAAGGAGCTGGTTTTGATCATAGAGAGGCAT : 31591 246 : AsnHisLeuSer : 249 .!.||||||!:! GluHisLeuAsn 31592 : GAGCATCTAAAT : 31605 vulgar: AmOr115 0 249 . KQ414804.1 30788 31605 + 281 M 38 114 G 3 0 M 29 87 G 0 3 M 20 60 S 0 1 5 0 2 I 0 63 3 0 2 S 1 2 M 55 165 G 0 6 M 82 246 G 0 3 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 30789 31605 281 + . gene_id 2 ; sequence AmOr115 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 30789 31053 . + . KQ414804.1 exonerate:protein2genome:local exon 30789 31053 . + . insertions 3 ; deletions 3 KQ414804.1 exonerate:protein2genome:local splice5 31054 31055 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 31054 31120 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 31119 31120 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 31121 31605 . + . KQ414804.1 exonerate:protein2genome:local exon 31121 31605 . + . insertions 9 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 30789 31605 281 + . alignment_id 2 ; Query AmOr115 ; Align 30789 1 114 ; Align 30903 42 87 ; Align 30993 71 60 ; Align 31123 92 165 ; Align 31294 147 246 ; Align 31543 229 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr115 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 269 Query range: 249 -> 392 Target range: 33631 -> 34668 250 : ArgPheAlaValIleValGluAspCysPheAsnIleThrLeuLeuValGlnThrLeuIle : 269 |||||||||..!!!::!!|||||||||||||||! ! !||||||:!!|||! !|||:!! ArgPheAlaThrMetIleGluAspCysPheAsnThrLeuLeuLeuIleGlnMetLeuLeu 33632 : aGGTTCGCAACTATGATCGAGGATTGTTTCAACACATTGCTATTAATTCAGATGCTGCTC : 33689 270 : CysThrAlaMetPheCysLeuThrGlyTyrArgMetIleThrSer >>>> Target I : 285 ||||||!.! .!.|||!!! !|||!:! :!:.!! !..! 74 CysThrValGluIleCysPheGlnGlyPhe---LeuPhePheAsp++ 33690 : TGTACCGTCGAAATATGCTTTCAAGGCTTT---TTATTCTTCGATgt............. : 33736 286 : ntron 1 >>>> ValAspArgGluAspGluAlaAspValProIleValGlyIleIleP : 300 bp ||| ! !|||:!!||| !! :!! !! !||| !:!::!!| ++ValIleLeuGluAsnGluLysGlyIlePheAsnValGlnLeuLeuP 33737 : ............agGTGATACTAGAAAACGAGAAAGGAATATTCAACGTGCAATTGCTTT : 33853 301 : hePheIleIleHisValIleTyrThrMetLeuHisLeuPheIleTyrCysTyrValGlyG : 320 |||||:!::!: !||| !!:!! !:!::!!|||:!!!:!||||||||||||:!!|||| hePheValLeuPheValCysPheIleLeuValHisIleTyrIleTyrCysTyrIleGlyG 33854 : TCTTCGTGCTGTTCGTATGCTTCATCCTTGTACACATCTACATTTATTGTTACATAGGAG : 33913 321 : luThrLeuLeuGlyGln >>>> Target Intron 2 >>>> SerThrGlyIleGl : 330 ||! !|||||| !!!. 454 bp |||! !! !!!:.! luMetLeuLeuThrHis+- ++SerArgGluMetSe 33914 : AGATGCTACTCACACATgc.........................agAGCAGAGAAATGAG : 34397 331 : yLeuSerThrTyrHisCysAsnTrpTyrAspLeuProSerArgArgAlaValLeuLeuMe : 350 ! !|||.!!|||.!.! |||||||||:!!:!! !! !!! !..!||| !! !|||:! rAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProProGluAlaLysCysLeuLe 34398 : CAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCAGAAGCCAAGTGCCTTTT : 34457 351 : tIleValIleArgArgAlaAsnValSerPheGlnIleThrAlaGlyLysPheSerProPh : 370 :.!!:!!!!:!.!|||.!! ! ! !!.!! :!:|||||||||||||||||| !!|| uPheIleMetHisArgThrAlaArgProLeuCysLeuThrAlaGlyLysPheSerThrPh 34458 : ATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCAGGAAAATTCAGTACCTT : 34517 371 : eSerLeuGluPhePheAsnAla >>>> Target Intron 3 >>>> ValLeuLys : 380 ||||:!!|||.!.|||!:!.!! 83 bp :::|||||| eSerMetGluMetPheSerThr++ ++IleLeuLys 34518 : CTCCATGGAAATGTTCAGTACTgt.........................agattcTGAAA : 34630 381 : ThrSerAlaGlyTyrLeuSerValLeuLeuAlaMet : 392 |||:!! !|||||||||||||||||||||.!!:!: ThrAlaMetGlyTyrLeuSerValLeuLeuThrVal 34631 : ACAGCAATGGGATATCTTTCAGTTCTCCTCACAGTT : 34668 vulgar: AmOr115 249 392 . KQ414804.1 33631 34668 + 269 M 30 90 G 1 0 M 4 12 5 0 2 I 0 70 3 0 2 M 41 123 5 0 2 I 0 450 3 0 2 M 52 156 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33632 34668 269 + . gene_id 3 ; sequence AmOr115 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33632 33733 . + . KQ414804.1 exonerate:protein2genome:local exon 33632 33733 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local splice5 33734 33735 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 33734 33807 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 33806 33807 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 33808 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33808 33930 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 2 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 1 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 3 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 3 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 2 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34668 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34668 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33632 34668 269 + . alignment_id 3 ; Query AmOr115 ; Align 33632 250 90 ; Align 33722 281 12 ; Align 33808 285 123 ; Align 34385 326 156 ; Align 34624 378 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr115 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 247 Query range: 325 -> 398 Target range: 39965 -> 40262 326 : SerThrGlyIleGlyLeuSerThrTyrHisCysAsnTrpTyrAspLeuProSerArgArg : 345 |||||||||||||||! !|||.!!||| !!||||||||||||||||||||| !!!:!!.! SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 346 : AlaValLeuLeuMetIleValIleArgArgAlaAsnValSerPheGlnIleThrAlaGly : 365 ||||||! !|||:!:||||||||| !!||||||.!.|||||||||||||||||||||||| AlaValSerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGly 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGA : 40083 366 : LysPheSerProPheSerLeuGluPhePheAsnAlaValLeu{L} >>>> Target I : 380 ||||||||||||||||||||||||.!.|||||||||||| !{:} 78 LysPheSerProPheSerLeuGluLeuPheAsnAlaValSer{G}+- 40084 : AAATTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTGTGAGT{C}ga............. : 40131 381 : ntron 1 >>>> {ys}ThrSerAlaGlyTyrLeuSerValLeuLeuAlaMetLysAsp : 394 bp {!!}|||||||||||||||||||||||||||||||||||||||||| +-{ln}ThrSerAlaGlyTyrLeuSerValLeuLeuAlaMetLysAsp 40132 : ............aa{AA}ACGTCTGCTGGATATCTTTCCGTGTTGCTAGCTATGAAAGAC : 40248 395 : ArgLeuValGlu : 398 |||||||||||| ArgLeuValGlu 40249 : AGACTGGTCGAA : 40262 vulgar: AmOr115 325 398 . KQ414804.1 39965 40262 + 247 M 54 162 S 0 1 5 0 2 I 0 74 3 0 2 S 1 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40262 247 + . gene_id 4 ; sequence AmOr115 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39966 40128 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40128 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40129 40130 . + . intron_id 1 ; splice_site "GA" KQ414804.1 exonerate:protein2genome:local intron 40129 40206 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40205 40206 . + . intron_id 0 ; splice_site "AA" KQ414804.1 exonerate:protein2genome:local cds 40207 40262 . + . KQ414804.1 exonerate:protein2genome:local exon 40207 40262 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39966 40262 247 + . alignment_id 4 ; Query AmOr115 ; Align 39966 326 162 ; Align 40209 381 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr115 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 227 Query range: 283 -> 393 Target range: 51708 -> 52352 284 : SerValAspArgGluAspGluAlaAspValProIleValGlyIleIlePhePheIleIle : 303 |||:!!|||..!||| !!:! !:!!::: ||| |||:::|||!!.:!:.!! SerIleAspGluGluIleAspGluAsnMet---IlePheGlnIleLeuPheLeuLeuPhe 51709 : TCAATTGACGAGGAAATAGATGAAAACAtg---attttccaaattctctTTTTGCTGTTC : 51763 304 : HisValIleTyrThrMetLeuHisLeuPheIleTyrCysTyrValGlyGluThrLeuLeu : 323 :!!|||:!!|||..!||||||!!.||||||:!:||||||||||||||||||! !|||! ! TyrValValTyrValMetLeuGlnLeuPheLeuTyrCysTyrValGlyGluArgLeuSer 51764 : TACGTGGTTTACGTGATGCTACAATTATTCTTGTATTGTTACGTGGGTGAAAGGCTTTCC : 51823 324 : GlyGln >>>> Target Intron 1 >>>> SerThrGlyIleGlyLeuSerThrT : 334 ! !:!! 60 bp |||..!! !|||!.! !:!!.!!| ValGlu++ ++SerValGluIleAlaAsnAlaAlaT 51824 : GTTGAGgt.........................agAGCGTTGAAATAGCTAACGCGGCAT : 51916 335 : yrHisCysAsnTrpTyrAspLeuProSerArgArgAlaValLeuLeuMetIleValIleA : 354 || !!! !.!.||||||:!!||| !! !!!:!!.!||| !||||||:!:|||:!!!!:| yrAspSerGluTrpTyrAsnLeuSerProLysAsnAlaLysLeuLeuLeuIleIleMetA 51917 : ACGATTCTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTGCTACTAATTATCATGC : 51976 355 : rgArgAlaAsnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluP : 374 ||||||||!..:!! !!.!.|||||||||||||||!:!|||:!! !!|||!!!||| !. rgArgAlaArgLeuProLeuGlnIleThrAlaGlyArgPheAlaThrPheThrLeuMetL 51977 : GACGAGCCAGGTTACCTCTACAAATCACTGCAGGTAGATTTGCTACTTTCACTCTGATGC : 52036 375 : hePheAsnAla >>>> Target Intron 2 >>>> ValLeuLysThrSerAla<- : 384 !.!:!::: ! 251 bp :!!||||||||||||!.! euTyrSerGln++ ++IleLeuLysThrSerValGl 52037 : TGTATTCACAGgt.........................agATTTTAAAAACCTCGGTGGG : 52317 385 : ><->GlyTyrLeuSerValLeuLeuAlaMetLys : 393 ||||||:!!|||||||||! !||||||||| yLysGlyTyrValSerValLeuTyrAlaMetLys 52318 : AAAAGGTTATGTTTCTGTTCTATACGCAATGAAA : 52352 vulgar: AmOr115 283 393 . KQ414804.1 51708 52352 + 227 M 10 30 G 1 0 M 31 93 5 0 2 I 0 56 3 0 2 M 52 156 5 0 2 I 0 247 3 0 2 M 6 18 G 0 6 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51709 52352 227 + . gene_id 5 ; sequence AmOr115 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51709 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51709 51831 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52047 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52047 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 52048 52049 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 52048 52298 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 52297 52298 . + . intron_id 1 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 52299 52352 . + . KQ414804.1 exonerate:protein2genome:local exon 52299 52352 . + . insertions 6 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51709 52352 227 + . alignment_id 5 ; Query AmOr115 ; Align 51709 284 30 ; Align 51739 295 93 ; Align 51892 326 156 ; Align 52299 378 18 ; Align 52323 384 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr115 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 159 -> 251 Target range: 44874 -> 45138 160 : LeuLeuHisProAlaThrPheProTyrGluThrSerLysSerProAsnTyrGluIleThr : 179 |||||| !! !||| !|||||||||!!:!:!..! |||||||||||||||.!!||| LeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThr 44875 : CTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACA : 44932 180 : TrpLeuGlyGlnLeuMetGlyThrValLeuThrAlaIleCysTyrSerCysPheAspThr : 199 !:!!!.!|||:!!!!:!.!.!! !!! !.!!|||! ! |||!!!..! !!|||||| ValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThr 44933 : GTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACT : 44992 200 : PheLeuAlaValLeuValLeuHisLeuCysGlyGlnLeuThrValLeuGlyThrAlaLeu : 219 |||:!!!.!:!!|||:!!||||||:!!||||||||||||:!! !||| !!!.!! !!!! PheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArgAsnGluPhe 44993 : TTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGAAACGAATTC : 45052 220 : GluAspLeuValAsnAlaThrArgArgAsnAspTyrLysThrPheGluGlnArgLeuSer : 239 ! ! ||| !:! ! !||| ! !|||!!.:!! !!:!|||.!! GlyLysLeu------------GlnAlaCysAspLysValThrLeuGlnAlaLysLeuGly 45053 : GGTAAGCTT------------CAAGCATGCGATAAAGTAACATTACAGGCGAAGTTGGGG : 45100 240 : SerIleValAsnArgHisAsnHisLeuSerArgPhe : 251 !.!||||||.!.!:!|||.!.:!!|||!:!|||||| LysIleValGlnLysHisGluTyrLeuAsnArgPhe 45101 : AAAATCGTGCAGAAACACGAATATCTTAACAGGTTC : 45138 vulgar: AmOr115 159 251 . KQ414804.1 44874 45138 + 145 M 63 189 G 4 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44875 45138 145 + . gene_id 6 ; sequence AmOr115 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44875 45138 . + . KQ414804.1 exonerate:protein2genome:local exon 44875 45138 . + . insertions 0 ; deletions 4 KQ414804.1 exonerate:protein2genome:local similarity 44875 45138 145 + . alignment_id 6 ; Query AmOr115 ; Align 44875 160 189 ; Align 45064 227 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr115 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 0 -> 83 Target range: 44107 -> 44347 1 : MetAspPheAlaMetGlyTrpAsnArgPheAsnLeuThrLeuLeuGlyValTyrProGlu : 20 :!! ! !:!!.! |||||||||!.!!:!!.!:!!! !!!!:!!|||:!!!::|||||| LeuLysTyrValTyrGlyTrpAsnHisTyrThrMetArgPheMetGlyIleTrpProGlu 44108 : TTGAAGTATGTGTACGGTTGGAACCATTACACCATGAGGTTCATGGGAATCTGGCCagag : 44165 21 : ProArgLysMetSerArgAsnSerArgLeuMetSerSerLeuIlePheTrpPheThrThr : 40 |||||| ::!!:! ||||||! !:!! ! .!. !!..! GluArgLysTrpAsnGln------------ProSerSerTyrLeuAlaLeuIleProVal 44166 : gaaagaaaatggaaCCAA------------CCATCGAGTTACCTAGCTCTAATACCAGTT : 44213 41 : LeuValThrPheThrPheIleCysAlaProGlnThrAlaAsnLeuIleLeuLysSerThr : 60 |||:!!! !||| !|||:!!|||!.!||||||||| !|||||| !!!!! !!! ! LeuMetMetPheLeuPheValCysValProGlnThrIleAsnLeuSerPheIleTrpGly 44214 : CTCATGATGTTTCTCTTCGTTTGTGTCCCACAAACGATCAATCTTTCATTCATCTGGGGT : 44273 61 : SerLeuAspGluValIleGluAsnLeuSerIle<->AsnIleProIleValPheAlaLeu : 79 ..!!!!:!! !|||:!!||||||||||||!!: |||||| !!|||..!.!!:!!||| AspPheAsnLeuValValGluAsnLeuSerMetGlyAsnIleThrIleThrIleSerLeu 44274 : GATTTTAATTTAGTGGTAGAGAATCTATCCATGGGTAACATAACAATCACTATTTCCCTT : 44333 80 : IleLysGlnIle : 83 :!:||| ||| LeuLysThrIle 44334 : CTGAAGACCATC : 44347 vulgar: AmOr115 0 83 . KQ414804.1 44107 44347 + 103 M 26 78 G 4 0 M 41 123 G 0 3 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44108 44347 103 + . gene_id 7 ; sequence AmOr115 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44108 44347 . + . KQ414804.1 exonerate:protein2genome:local exon 44108 44347 . + . insertions 3 ; deletions 4 KQ414804.1 exonerate:protein2genome:local similarity 44108 44347 103 + . alignment_id 7 ; Query AmOr115 ; Align 44108 1 78 ; Align 44186 31 123 ; Align 44312 72 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr114 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 897 Query range: 11 -> 254 Target range: 44095 -> 45138 12 : IleGlnLysAspLeuLysTyrLeuTyrGlyTrpAsnTyrTyrThrMetLysPheIleGly : 31 |||..!! !||||||||||||:!!||||||||||||:!!|||||||||!:!|||!!:||| IleMetIleAspLeuLysTyrValTyrGlyTrpAsnHisTyrThrMetArgPheMetGly 44096 : ataatGATAGATTTGAAGTATGTGTACGGTTGGAACCATTACACCATGAGGTTCATGGGA : 44153 32 : IleTrpProGluGluArgLysTrpAsnGlnAlaSerAsnTyrLeuValLeuIleProPhe : 51 |||||||||||||||||||||||||||||| !!|||!:!||||||!.!||||||||| !! IleTrpProGluGluArgLysTrpAsnGlnProSerSerTyrLeuAlaLeuIleProVal 44154 : ATCTGGCCagaggaaagaaaatggaaCCAACCATCGAGTTACCTAGCTCTAATACCAGTT : 44213 52 : LeuMetIleLeuCysPheIleCysAlaProGlnThrIleAsnLeuThrIleIleSerAsn : 71 ||||||!!:!!! !|||:!!|||!.!||||||||||||||||||:!!.!!|||!!!..! LeuMetMetPheLeuPheValCysValProGlnThrIleAsnLeuSerPheIleTrpGly 44214 : CTCATGATGTTTCTCTTCGTTTGTGTCCCACAAACGATCAATCTTTCATTCATCTGGGGT : 44273 72 : AspPheAsnLeuValIleGluAsnLeuSerMetGlyAsnIleThrIleThrLeuSerLeu : 91 |||||||||||||||:!!|||||||||||||||||||||||||||||||||:!!|||||| AspPheAsnLeuValValGluAsnLeuSerMetGlyAsnIleThrIleThrIleSerLeu 44274 : GATTTTAATTTAGTGGTAGAGAATCTATCCATGGGTAACATAACAATCACTATTTCCCTT : 44333 92 : LeuLysThrIleAlaPheTrpIleAsnGlyLys{P} >>>> Target Intron 1 > : 103 |||||||||||||||||||||||||||||||||{|} 314 bp LeuLysThrIleAlaPheTrpIleAsnGlyLys{P}++ 44334 : CTGAAGACCATCGCTTTTTGGATCAACGGCAAA{C}gt...................... : 44372 104 : >>> {ro}LeuLysSerLeuLeuAsnCysMetAlaAsnAspTrpIleLysValThrSer : 120 {||}|||||||||||||||!!.|||||||||:!!||||||! !! !|||:!!!.! ++{ro}LeuLysSerLeuLeuLysCysMetAlaAspAspTrpSerThrValSerLys 44373 : ...ag{CA}CTGAAATCTCTGCTGAAATGCATGGCCGACGATTGGAGCACAGTATCGAAA : 44734 121 : LysThrGluGlnGluThrMetAlaArgIleAlaSerIleThrArgAsnThrIleIleLys : 140 ||| !!!:! !!!:||||||::!!.!||||||!!!|||||||||!!.|||||||||!.. LysAspAspLeuAspThrMetSerAsnIleAlaArgIleThrArgLysThrIleIleSer 44735 : AAAGATGATCTAGACACCATGAGTAACATCGCAAGGATCACCAGAAAGACTATAATAAGC : 44794 141 : SerThrValMetCysHisThrValValAlaPheTyrValPheLeuArgTyrIleSerMet : 160 |||||||||:!:||||||! !|||||| ! !|||:!!|||||||||!:!:!!!!!! ! SerThrValLeuCysHisIleValValIleThrTyrIlePheLeuArgPheLeuThrArg 44795 : AGCACAGTGTTATGTCACATTGTGGTCATCACTTATATATTTCTACGATTCCTCACCAGG : 44854 161 : LysTyrAsnGluAsnLysLeuLeuPheArgAlaTyrPheProTyrAspThrThrValSer : 180 ||||||!:!! !.!!:!||||||||||||||||||||||||||||||!:! !|||||| LysTyrSerGlyThrArgLeuLeuPheArgAlaTyrPheProTyrAspSerAspValSer 44855 : AAGTACAGCGGCACCAGACTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGT : 44914 181 : ProAsnTyrGluLeuThrIleLeuGlyGlnPheValAlaAlaLeuTyrAlaAlaThrSer : 200 ||||||||||||!!!|||:!::!!!.!|||.!!:!!||||||!!!||||||||||||!!! ProAsnTyrGluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThr 44915 : CCAAATTACGAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACA : 44974 201 : TyrThrAlaValAspThrPheValAlaMetLeuIleLeuHisValCysGlyGlnLeuSer : 220 |||||||||||||||||||||:!!!.!||||||||||||||||||||||||||||||||| TyrThrAlaValAspThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeuSer 44975 : TACACAGCCGTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCG : 45034 221 : GlyIleLysAsnGluLeuSerArgLeuProThrTyrAspLysLysAspLeuLysArgArg : 240 ..!:!:!:!||||||!!!.!!!:!|||! !.!!! !|||||| ! |||:!! !!:! AsnLeuArgAsnGluPheGlyLysLeuGlnAlaCysAspLysValThrLeuGlnAlaLys 45035 : AATTTGAGAAACGAATTCGGTAAGCTTCAAGCATGCGATAAAGTAACATTACAGGCGAAG : 45094 241 : LeuLysGluIleValGlnLysHisGluTyrValAsnArgPhe : 254 ||| !:!!|||||||||||||||||||||:!!||||||||| LeuGlyLysIleValGlnLysHisGluTyrLeuAsnArgPhe 45095 : TTGGGGAAAATCGTGCAGAAACACGAATATCTTAACAGGTTC : 45138 vulgar: AmOr114 11 254 . KQ414804.1 44095 45138 + 897 M 91 273 S 0 1 5 0 2 I 0 310 3 0 2 S 1 2 M 151 453 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44096 45138 897 + . gene_id 1 ; sequence AmOr114 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 44096 44369 . + . KQ414804.1 exonerate:protein2genome:local exon 44096 44369 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 44370 44371 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 44370 44683 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 44682 44683 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 44684 45138 . + . KQ414804.1 exonerate:protein2genome:local exon 44684 45138 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44096 45138 897 + . alignment_id 1 ; Query AmOr114 ; Align 44096 12 273 ; Align 44686 104 453 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr114 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 462 Query range: 252 -> 398 Target range: 51506 -> 52358 253 : ArgPheAlaGluThrIleGluAsnCysPheAsnValMetLeuLeuIleGlnIleLeuGly : 272 |||||||||||||||||||||..!|||||||||:!!|||||||||||||||!!:|||||| ArgPheAlaGluThrIleGluArgCysPheAsnMetMetLeuLeuIleGlnMetLeuGly 51507 : AGGTTCGCAGAAACGATAGAGCGTTGTTTCAATATGATGCTTCTGATTCAGATGCTCGGT : 51564 273 : CysThrValGlnLeuCysPheGlnCysPheGlnAlaIleMet >>>> Target Intr : 287 ||||||||||||||||||||||||||||||||||||:!!||| 100 bp CysThrValGlnLeuCysPheGlnCysPheGlnAlaValMet++ 51565 : TGTACCGTTCAGCTATGCTTCCAGTGTTTCCAAGCAGTCATGgt................ : 51611 288 : on 1 >>>> SerPheGlyGlyGlyGluAlaGlnGluTyrLeuPhePheGlnLeuMetP : 303 |||.!! ! !! !||| !.!.||| !!:::...||||||::::::| ++SerIle---AspGluGluIleAspGluAsnMetIlePheGlnIleLeuP 51612 : .........agTCAATT---GACGAGGAAATAGATGAAAACAtgattttccaaattctct : 51754 304 : heLeuLeuValTyrValPheTyrValMetLeuGlnLeuTyrLeuTyrCysTyrValGlyG : 323 |||||||| !!|||||| !!||||||||||||||||||!:!||||||||||||||||||| heLeuLeuPheTyrValValTyrValMetLeuGlnLeuPheLeuTyrCysTyrValGlyG 51755 : TTTTGCTGTTCTACGTGGTTTACGTGATGCTACAATTATTCTTGTATTGTTACGTGGGTG : 51814 324 : luArgLeuSerValGlu >>>> Target Intron 2 >>>> SerMetGluIleVa : 333 ||||||||||||||||| 60 bp |||:!:||||||!. luArgLeuSerValGlu++ ++SerValGluIleAl 51815 : AAAGGCTTTCCGTTGAGgt.........................agAGCGTTGAAATAGC : 51904 334 : lAsnAlaAlaTyrAsnThrGluTrpTyrThrLeuProThrAsnIleThrLysMetLeuIl : 353 !||||||||||||:!!:!!|||||||||!.!||| !! !!!!.! !.!!|||:!!|||:! aAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLysAsnAlaLysLeuLeuLe 51905 : TAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTGCTACT : 51964 354 : eIleValMetCysArgAlaLysSerProLeuThrValThrAlaGlyArgPheCysSerPh : 373 !|||:!!||| ! ||||||!:!! !|||||| !:!!|||||||||||||||..!!!!|| uIleIleMetArgArgAlaArgLeuProLeuGlnIleThrAlaGlyArgPheAlaThrPh 51965 : AATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCAGGTAGATTTGCTACTTT : 52024 374 : eThrLeuGlnLeuPheSerGlu >>>> Target Intron 3 >>>> ValLeuLys : 383 |||||||..!|||!:!|||:!! 251 bp :!!|||||| eThrLeuMetLeuTyrSerGln++ ++IleLeuLys 52025 : CACTCTGATGCTGTATTCACAGgt.........................agATTTTAAAA : 52305 384 : ThrSerMet<-><->ArgTyrLeuSerValLeuTyrAlaValLysAspLys : 398 ||||||:!! !!|||:!!|||||||||||||||:!!||| !!||| ThrSerValGlyLysGlyTyrValSerValLeuTyrAlaMetLysTyrLys 52306 : ACCTCGGTGGGAAAAGGTTATGTTTCTGTTCTATACGCAATGAAATATAAA : 52358 vulgar: AmOr114 252 398 . KQ414804.1 51506 52358 + 462 M 34 102 5 0 2 I 0 96 3 0 2 M 2 6 G 1 0 M 39 117 5 0 2 I 0 56 3 0 2 M 52 156 5 0 2 I 0 247 3 0 2 M 6 18 G 0 6 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51507 52358 462 + . gene_id 2 ; sequence AmOr114 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51507 51608 . + . KQ414804.1 exonerate:protein2genome:local exon 51507 51608 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51609 51610 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51609 51708 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51707 51708 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 51709 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51709 51831 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 1 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52047 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52047 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 52048 52049 . + . intron_id 3 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 52048 52298 . + . intron_id 3 KQ414804.1 exonerate:protein2genome:local splice3 52297 52298 . + . intron_id 2 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 52299 52358 . + . KQ414804.1 exonerate:protein2genome:local exon 52299 52358 . + . insertions 6 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51507 52358 462 + . alignment_id 2 ; Query AmOr114 ; Align 51507 253 102 ; Align 51709 287 6 ; Align 51715 290 117 ; Align 51892 329 156 ; Align 52299 381 18 ; Align 52323 387 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr114 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 366 Query range: 14 -> 325 Target range: 35903 -> 37919 15 : AspLeuLysTyrLeuTyrGlyTrpAsnTyrTyrThrMetLysPheIleGlyIleTrpPro : 34 !!::!! ! !:! ! ||||||||| !!:!!:!:!:... ! :!!|||:!:|||||| GluMetAspPheAlaMetGlyTrpAsnArgPheSerLeuSerValLeuGlyValTrpPro 35904 : GAAATGGATTTTGCTATGGGATGGAATCGTTTCAGTTTATCTGTACTTGGCGTGTGGCCA : 35961 35 : GluGluArgLysTrpAsnGln<-><-><-><->AlaSerAsnTyrLeuValLeuIlePro : 50 ||| !|||||| !::!.!. |||||||||!:!:!! !!! !.!! !! GluProArgLysMetSerAsnLeuSerArgPheAlaSerAsnPheIlePheTrpPheThr 35962 : GAACCGAGAAAGATGTCTAACCTGTCACGATTCGCGTCTAACTTTATATTCTGGTTCACG : 36021 51 : PheLeuMetIleLeuCysPheIleCysAlaProGlnThrIleAsnLeuThrIleIleSer : 70 !|||!!:! :!! !||||||||||||||||||! !! :!!|||..!::: ||| ThrLeuIleThrValValPheIleCysAlaProGlnMetThrHisLeuValLeuLysSer 36022 : ACTTTGATAACGGTTGTCTTCATATGCGCTCCCCAAATGACGCATTTGGTAttaaaatcg : 36081 71 : AsnAspPheAsnLeuValIleGluAsnLeuSerMetGlyAsnIleThrIleThrLeuSer : 90 ...:::...:!! !||||||||||||||||||:!: |||||| !!!!: !!!!||| ThrAsnLeuAspGluValIleGluAsnLeuSerVal---AsnIleProMetLeuPheSer 36082 : acgaatttgGACGAGGTGATAGAGAATCTGTCGGTC---AACATACCGATGCTCTTCTCA : 36138 91 : Leu{L} >>>> Target Intron 1 >>>> {eu}LysThrIleAlaPheTrpIle : 99 |||{ } 381 bp { !}||| ||| Leu{A}+- +-{sp}LysLeuIlePheThrIleHis 36139 : TTG{G}gc.........................aa{AC}AAACtgattttcacaattcac : 36546 100 : AsnGlyLysProLeuLysSerLeuLeuAsnCysMetAlaAsnAspTrpIleLysValThr : 119 !....! ! !!||| !! !|||:!!!:! !!: !:!!|||||| :!! !! ! ThrSerLeuAlaLeuValPheLeuMetSerGlnIlePheAspAspTrpAlaGluProIle 36547 : ACGTCTCTAGCGCTAGTATTCTTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATC : 36606 120 : SerLysThrGluGlnGluThrMetAlaArgIleAlaSerIleThrArgAsnThrIleIle : 139 !!:!!..!!!:!::.!.|||||| !!:!! !|||!.!|||!:!|||! ! ! !||| ProGluValAspArgHisThrMetLeuLysThrAlaLysIleSerArgMetIleSerIle 36607 : CCGGAGGTGGATCGCCACACGATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATA : 36666 140 : LysSerThrValMetCysHisThrValValAlaPheTyrValPheLeuArg<->TyrIle : 158 !!!:!!:!!:!! :!!..!:!!||| ! !!:!:!!! |||!:! !::! ! ValCysSerIleLeuThrTyrValMetValLeuAlaPheLeuSerLeuGlnIleTrpSer 36667 : GTCTGTTCTATCCTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGC : 36726 159 : SerMetLys<-><-><-><->TyrAsnGluAsnLysLeuLeuPheArgAlaTyrPhePro : 174 ||||||:!! !:!|||! !... !||||||.!!! !||| |||||| SerMetGlnAsnThrSerGluPheAsnValGlyGlyLeuLeuIleProAlaThrPhePro 36727 : AGCATGCAAAACACCTCGGAGTTCAACGTAGGAGGACTACTTATCCCGGCCACATTTCCA : 36786 175 : TyrAspThrThrValSerProAsnTyrGluLeuThrIleLeuGlyGlnPheValAlaAla : 194 |||||||||!.! !|||||||||||||||:!!||| |||||||||||||||!.!.!! TyrAspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThr 36787 : TACGACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACA : 36846 195 : LeuTyrAlaAlaThrSerTyrThrAlaValAspThrPheValAlaMetLeuIleLeuHis : 214 :!!! ::!|||! !!!!|||:!!..! !!|||||||||||||||:!:|||:!:|||||| ValLeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHis 36847 : GTGTTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACAC : 36906 215 : ValCysGlyGlnLeuSerGlyIleLysAsnGluLeuSerArgLeuProThrTyrAspLys : 234 :!!||||||||||||!!!! !:!!:::! !! |||..!!.!||| !!!.! ! ! IleCysGlyGlnLeuThrValLeuArgIleAlaLeuGluAsnLeuAlaAsnThrThrIle 36907 : ATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTCGAGAATCTTGCTAACACGACAATA : 36966 235 : LysAsp<-><-><-><->LeuLysArgArgLeuLysGluIleValGlnLysHisGluTyr : 250 |||||| !!!:!!..!|||||| ! ! ||||||!!.!:!!!..!. ! LysAspAsnTyrSerLysPheGlnGluArgLeuGlyTyrIleValHisArgGlnAsnGln 36967 : AAAGACAACTACAGCAAGTTCCAAGAACGATTAGGATACATTGTGCACAGGCAGAATCAA : 37026 251 : ValAsn{Ar} >>>> Target Intron 2 >>>> {g}PheAlaGluThrIleGlu : 259 :!! !{||} 534 bp {|}::!|||! !! !:!:||| LeuPhe{Ar}++ ++{g}TyrAlaValIleValGlu 37027 : TTGTTC{AG}gt.........................ag{g}taCGCTGTGATAGTGGAA : 37587 260 : AsnCysPheAsnValMetLeuLeuIleGlnIleLeuGlyCysThrValGlnLeuCysPhe : 279 :!!|||||||||:!!|||||||||:!!|||! !||| !||||||!.!..!||||||.!. AspCysPheAsnIleMetLeuLeuValGlnThrLeuMetCysThrAlaMetLeuCysMet 37588 : GATTGCTTCAACATCATGCTGCTCGTTCAAACTTTAATGTGCACCGCCATGCTCTGTATG : 37647 280 : GlnCysPheGlnAlaIleMetSer >>>> Target Intron 3 >>>> PheGlyG : 290 ! !:!!:: !!:|||!!! 135 bp ! !! !. ThrGlyTyrArg---MetMetThr++ ++SerValA 37648 : ACTGGATATCGC---ATGATGACCgt.........................agTCTGTTA : 37812 291 : lyGlyGluAlaGlnGluTyrLeuPhePheGlnLeuMetPheLeuLeuValTyrValPheT : 310 .! !||| !:!!!!: ! !.!!.!! ::::::|||...::: :!!||| !| snGlnGluGlnGluAspValProIleIleGlyValIlePhePheIleSerHisValThrT 37813 : ATCAGGAGCAAGAGGATGTACCGATTATTggagtaatattttttatctcaCACGTGACCT : 37872 311 : yrValMetLeuGlnLeuTyrLeuTyrCysTyrValGlyGluArgLeu : 325 ||..!||||||...|||::::::||||||||||||||||||! !||| yrThrMetLeuHisLeuPheIleTyrCysTyrValGlyGluThrLeu 37873 : ATACCATGTTAcatctatttatttattgctacgtGGGCGAAACACTT : 37919 vulgar: AmOr114 14 325 . KQ414804.1 35903 37919 + 366 M 27 81 G 0 12 M 41 123 G 1 0 M 8 24 S 0 1 5 0 2 I 0 377 3 0 2 S 1 2 M 64 192 G 0 3 M 5 15 G 0 12 M 75 225 G 0 12 M 16 48 S 0 2 5 0 2 I 0 530 3 0 2 S 1 1 M 30 90 G 1 0 M 3 9 5 0 2 I 0 131 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 35904 37919 366 + . gene_id 3 ; sequence AmOr114 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 35904 36144 . + . KQ414804.1 exonerate:protein2genome:local exon 35904 36144 . + . insertions 12 ; deletions 1 KQ414804.1 exonerate:protein2genome:local splice5 36145 36146 . + . intron_id 1 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 36145 36525 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 36524 36525 . + . intron_id 0 ; splice_site "AA" KQ414804.1 exonerate:protein2genome:local cds 36526 37036 . + . KQ414804.1 exonerate:protein2genome:local exon 36526 37036 . + . insertions 27 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 37037 37038 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 37037 37570 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 37569 37570 . + . intron_id 1 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 37571 37670 . + . KQ414804.1 exonerate:protein2genome:local exon 37571 37670 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local splice5 37671 37672 . + . intron_id 3 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 37671 37805 . + . intron_id 3 KQ414804.1 exonerate:protein2genome:local splice3 37804 37805 . + . intron_id 2 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 37806 37919 . + . KQ414804.1 exonerate:protein2genome:local exon 37806 37919 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 35904 37919 366 + . alignment_id 3 ; Query AmOr114 ; Align 35904 15 81 ; Align 35997 42 123 ; Align 36120 84 24 ; Align 36528 93 192 ; Align 36723 157 15 ; Align 36750 162 225 ; Align 36987 237 48 ; Align 37572 254 90 ; Align 37662 285 9 ; Align 37806 288 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr114 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 319 -> 399 Target range: 39938 -> 40256 320 : TyrValGlyGluArgLeuSerValGluSerMetGluIleValAsnAlaAlaTyrAsnThr : 339 |||::: ::: ::: |||! ! !|||! !.!.:!!||||||:!! ! TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 340 : GluTrpTyrThrLeuProThrAsnIleThrLysMetLeuIleIleValMetCysArgAla : 359 .!.|||||| !|||||| !!!!. !.!! !|||:!!||||||!!:||||||||| AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 360 : LysSerProLeuThrValThrAlaGlyArgPheCysSerPheThrLeuGlnLeuPheSer : 379 :!! ! !!!!! !:!!|||||||||!:!||| !! !!|||:!!|||:!!||||||!:! GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsn 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAAC : 40116 380 : Glu >>>> Target Intron 1 >>>> ValLeuLysThrSerMetArgTyrLeuS : 390 ! 78 bp ||||||||||||||| !!||||||| Ala++ ++ValLeuLysThrSerAlaGlyTyrLeuS 40117 : GCTgt.........................agGTTTTAAAAACGTCTGCTGGATATCTTT : 40227 391 : erValLeuTyrAlaValLysAspLysIle : 399 |||||||| |||:!!||||||!:!:!: erValLeuLeuAlaMetLysAspArgLeu 40228 : CCGTGTTGCTAGCTATGAAAGACAGACTG : 40256 vulgar: AmOr114 319 399 . KQ414804.1 39938 40256 + 158 M 61 183 5 0 2 I 0 74 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40256 158 + . gene_id 4 ; sequence AmOr114 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39939 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40256 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40256 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40256 158 + . alignment_id 4 ; Query AmOr114 ; Align 39939 320 183 ; Align 40200 381 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr114 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 162 -> 235 Target range: 31320 -> 31539 163 : AsnGluAsnLysLeuLeuPheArgAlaTyrPheProTyrAspThrThrValSerProAsn : 182 .!.!!:..! !||||||!:!! !!.!|||||||||!:!|||! ! ! !! ! ! GlnAspArgLeuLeuLeuTyrProGlyTyrPheProPheAspIleArgProIleGlyVal 31321 : CAGGATCGTCTGCTCCTGTACCCTGGCTATTTTCCCTTCGATATTCGTCCAATAGGGGTA : 31378 183 : TyrGluLeuThrIleLeuGlyGlnPheValAlaAlaLeuTyrAlaAlaThrSerTyrThr : 202 !! !|||! !!!!|||||| ! :!!||||||! !! !|||!.!! !||||||||| LeuLeuSerThrAsnPheGlyGlnValLeuAlaAlaTyrSerAlaValIleSerTyrThr 31379 : CTACTGTCGACCAATTTTGGCCAAGTGCTCGCAGCGTATTCCGCTGTTATCAGTTACACC : 31438 203 : AlaValAspThrPheValAlaMetLeuIleLeuHisValCysGlyGlnLeuSerGlyIle : 222 .!!||||||||||||:!!||||||||||||:!!|||:!!|||||||||!!!..! !:!: ThrValAspThrPheIleAlaMetLeuIleMetHisIleCysGlyGlnPheGluIleLeu 31439 : ACCGTGGATACATTTATCGCGATGCTGATAATGCACATATGCGGACAATTTGAGATACTG : 31498 223 : LysAsnGluLeuSerArgLeuProThrTyrAspLysLys : 235 !:!.!.:!!||| !!|||||| ! ! !!!!:|||||| ArgGlnLysLeuArgArgLeuMetAspAspGluLysLys 31499 : AGACAGAAATTACGAAGGCTGATGGATGACGAGAAGAAG : 31539 vulgar: AmOr114 162 235 . KQ414804.1 31320 31539 + 151 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31321 31539 151 + . gene_id 5 ; sequence AmOr114 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31321 31539 . + . KQ414804.1 exonerate:protein2genome:local exon 31321 31539 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 31321 31539 151 + . alignment_id 5 ; Query AmOr114 ; Align 31321 163 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr114 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 10 -> 98 Target range: 30773 -> 31040 11 : AsnIleGlnLysAspLeuLysTyrLeuTyrGlyTrpAsnTyrTyrThrMetLysPheIle : 30 !..||| ..!! !|||||| ! !||||||||| !!::!.!|||:!!.!.:!! ThrIleThrSerGlyLeuLysValAlaLeuGlyTrpAsnArgTrpAsnMetGluLeuVal 30774 : ACAATTACTTCAGGTTTGAAGGTAGCACTTGGATGGAACCGTTGGAACATGGAACTGGTT : 30831 31 : GlyIleTrpProGluGluArgLysTrpAsnGlnAla<->SerAsnTyrLeuValLeuIle : 49 ||||||||||||||| !!!!!:!! :!!||| ! !!|||!:! !!.!|||:!: GlyIleTrpProGluProSerArgSerAspGlnArgTrpProAsnPheLysAlaLeuLeu 30832 : GGAATTTGGCCAGAACCGAGCAGATCTGATCAACGATGGCCGAATTTCAAGGCTTTGCTG : 30891 50 : ProPheLeuMetIleLeuCysPheIleCysAlaProGlnThrIleAsnLeuThrIleIle : 69 !.!!!!!:::|||::: ||| !!.!||||||!:!:!:|||||| !.!!||| PheIlePheValIleIlePhePheGlyThrGlyProGlnSerValAsnLeuLeuPheIle 30892 : TTCATTTTTGtgataatattttttggaaCCGGACCTCAGAGCGTGAATCTACTTTTCATA : 30951 70 : SerAsnAspPheAsnLeuValIleGluAsnLeuSerMetGlyAsnIleThrIleThrLeu : 89 !!!...|||.!!...||||||! ||||||||||||! !!.!|||||| !! !! ! ! TrpGlyAspLeuGlyLeuValThrGluAsnLeuSerThrAlaAsnIleProGlyIleAsn 30952 : TGGGGAGACCTTGGATTGGTCACGGAAAATCTGTCCACGGCTAATATTCCCGGCATAAAC : 31011 90 : SerLeuLeuLysThrIleAlaPheTrp : 98 :!!:!!:!!||| !||| ! !||| AlaMetMetLysLeuIleIleAlaTrp 31012 : GCCATGATGAAACTGATTATCGCCTGG : 31040 vulgar: AmOr114 10 98 . KQ414804.1 30773 31040 + 150 M 32 96 G 0 3 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 30774 31040 150 + . gene_id 6 ; sequence AmOr114 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 30774 31040 . + . KQ414804.1 exonerate:protein2genome:local exon 30774 31040 . + . insertions 3 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 30774 31040 150 + . alignment_id 6 ; Query AmOr114 ; Align 30774 11 96 ; Align 30873 43 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr114 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 252 -> 325 Target range: 33631 -> 33921 253 : ArgPheAlaGluThrIleGluAsnCysPheAsnValMetLeuLeuIleGlnIleLeuGly : 272 ||||||||| ! !||||||:!!|||||||||..!:!!||||||||||||!!:||| ! ArgPheAlaThrMetIleGluAspCysPheAsnThrLeuLeuLeuIleGlnMetLeuLeu 33632 : aGGTTCGCAACTATGATCGAGGATTGTTTCAACACATTGCTATTAATTCAGATGCTGCTC : 33689 273 : CysThrValGlnLeuCysPheGlnCysPheGlnAlaIleMet >>>> Target Intr : 287 |||||||||:!!:!!||||||||| !!||| ! !.!! 74 bp CysThrValGluIleCysPheGlnGlyPheLeuPhePheAsp++ 33690 : TGTACCGTCGAAATATGCTTTCAAGGCTTTTTATTCTTCGATgt................ : 33736 288 : on 1 >>>> SerPheGlyGlyGlyGluAlaGlnGluTyrLeuPhePheGlnLeuMetP : 303 !.!. !! !..!||| :!!! ! !!! ! ! ||||||:!:| ++ValIleLeuGluAsnGlu---LysGlyIlePheAsnValGlnLeuLeuP 33737 : .........agGTGATACTAGAAAACGAG---AAAGGAATATTCAACGTGCAATTGCTTT : 33853 304 : heLeuLeuValTyrValPheTyrValMetLeuGlnLeuTyrLeuTyrCysTyrValGlyG : 323 ||!!!:!!:!!!:!|||! !!:!:!!:!::!!!!.:!!|||:!!|||||||||:!!|||| hePheValLeuPheValCysPheIleLeuValHisIleTyrIleTyrCysTyrIleGlyG 33854 : TCTTCGTGCTGTTCGTATGCTTCATCCTTGTACACATCTACATTTATTGTTACATAGGAG : 33913 324 : luArgLeu : 325 ||! !||| luMetLeu 33914 : AGATGCTA : 33921 vulgar: AmOr114 252 325 . KQ414804.1 33631 33921 + 147 M 34 102 5 0 2 I 0 70 3 0 2 M 6 18 G 1 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33632 33921 147 + . gene_id 7 ; sequence AmOr114 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33632 33733 . + . KQ414804.1 exonerate:protein2genome:local exon 33632 33733 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33734 33735 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 33734 33807 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 33806 33807 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 33808 33921 . + . KQ414804.1 exonerate:protein2genome:local exon 33808 33921 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 33632 33921 147 + . alignment_id 7 ; Query AmOr114 ; Align 33632 253 102 ; Align 33808 287 18 ; Align 33826 294 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 122 -> 227 Target range: 448019 -> 448334 123 : LeuCysIlePheTyrGluValIleValIlePheSerAlaIleMetPheIleMetIleP : 142 ||| ... ...|||:!: !! !!!.||| !|||! |||! !:!!:!! LeuIlePheThrIleSerValValPheAlaLeuSerLeuIleSerPheThrLeuValG 448020 : ctcattttcacaatttcagtGGTGTTTGCCTTGTCTTTAATTAGCTTTACCTTGGTTG : 448077 143 : roThrIleProProIleLeuAsnIleIleMetProLeuAsnGluSerArgAspArgGl : 161 ! !:!: ! ...|||:::|||:::||||||:!!|||! !|||! ! !.!|| luPheValValHisPheLeuAspIleLeuMetProMetAsnValSerThrArgHisGl 448078 : AGTTCGTGGTAcattttctcgatattttaATGCCAATGAACGTATCTACACGGCACGA : 448134 162 : uPheIleTyrProThrTyrPhePheIleAspGluGluLysTyrTyrTyrProIleLeu : 180 |.!. !!:!! !! ! ! ! !||| !|||:!!!!:|||!:!!:!:!! !|||||| uLeuProPheLeuIleGlnCysPheCysAspGlnAspLysPhePheHisTyrIleLeu 448135 : GCTACCCTTCCTAATTCAATGTTTCTGTGATCAAGATAAATTCTTCCACTATATATTA : 448191 181 : ThrTyrMetAlaThrValIleLeuIleValSerSerValTyrLeuAlaCysAspThrA : 200 ..!!:!:!! !..!:!!! !:!!:!:! !.!!|||||| |||||| ! |||! ValPheLeuIleValLeuThrIleLeuGlyGlySerValValLeuAlaThrThrThrT 448192 : GTTTTCTTGATCGTTCTCACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAACGA : 448251 201 : snLeuValGlnIleValHisHisGlyCysAlaLeuLeuAlaIleSerGlyTyrHisPh : 219 .!! !:!! !.!! !!!.||| !!|||!.!|||!!! !|||:!!|||!! .!..! hrTyrLeuIlePheSerGlnHisCysCysGlyLeuPheLysIleAlaGly***GluIl 448252 : CTTACTTGATATTCAGTCAACATTGTTGTGGATTGTTCAAAATTGCAGGGTAAGAAAT : 448308 220 : eLysHisAlaValAspAspMetLys : 227 !! ! !|||:!! ||| ||| eMetThrAlaMetPheAspThrLys 448309 : TATGACTGCTATGtttgatacaaaa : 448334 vulgar: AmOr108 122 227 . KQ414815.1 448019 448334 + 129 M 105 315 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448020 448334 129 + . gene_id 1 ; sequence AmOr108 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448020 448334 . + . KQ414815.1 exonerate:protein2genome:local exon 448020 448334 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448020 448334 129 + . alignment_id 1 ; Query AmOr108 ; Align 448020 123 315 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 128 -> 216 Target range: 485668 -> 485932 129 : ValIleValIlePheSerAlaIleMetPheIleMetIleProThrIleProProIleL : 148 ||||||:!! ! ||| !:!!:!!.!.|||:!: ! ! !! ! ! !|||| ValIleIleGlyProSerLeuLeuValLeuIleLeuGlyIlePheAsnAsnSerIleL 485669 : GTAATTATCGGTCCATCGTTACTTGTGCTGATTCTTGGTATATTTAACAACAGTATTC : 485726 149 : euAsnIleIleMetProLeuAsnGluSerArgAspArgGluPheIleTyrProThrTy : 167 ||:!!|||:!:!!:||||||||| ! !!!||| ||| !.!! ! !:!! ! euAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnSerGl 485727 : TGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACTCGGA : 485783 168 : rPhePheIleAspGluGluLysTyrTyrTyrProIleLeuThrTyrMetAlaThrVal : 186 !|||:!!|||:!!:!!||||||!:!||||||||| !.!!:!!:!:!.! ! !! uHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLeuPhe 485784 : ACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCTCTTC : 485840 187 : IleLeuIleValSerSerValTyrLeuAlaCysAspThrAsnLeuValGlnIleValH : 206 :!!:!!|||! !:!!! !|||! |||::! ::: :::::: !|||:!!! ValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIleIleG 485841 : GTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATAATAC : 485900 207 : isHisGlyCysAlaLeuLeuAlaIleSerGly : 216 !.||| !|||!.!|||! !.!!||| !||| lnHisThrCysGlyLeuTyrThrIleValGly 485901 : AGCACACCTGTGGTTTGTATACAATCGTTGGG : 485932 vulgar: AmOr108 128 216 . KQ414815.1 485668 485932 + 129 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485669 485932 129 + . gene_id 2 ; sequence AmOr108 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485669 485932 . + . KQ414815.1 exonerate:protein2genome:local exon 485669 485932 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485669 485932 129 + . alignment_id 2 ; Query AmOr108 ; Align 485669 129 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 133 -> 215 Target range: 457168 -> 457414 134 : SerAlaIleMetPheIleMetIleProThrIleProProIleLeuAsnIleIleMetP : 153 .!!|||:!::!:.!!! !! !:!:! ! !.!!||| !:!!|||:!!|||:!::!:| GlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValP 457169 : GGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCC : 457226 154 : roLeuAsnGluSerArgAspArgGluPheIleTyrProThrTyrPhePheIleAspGl : 172 ||||||||||||||||| ! !!|||!!. ! ! !!.!! ! !:!|||:!!||| roLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMe 457227 : CATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACAT : 457283 173 : uGluLysTyrTyrTyrProIleLeuThrTyrMetAlaThrValIleLeuIleValSer : 191 !:!!|||||| :!! !|||:!!.!!:!!!!: !||| !:!!||||||!.!:!! tLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAla 457284 : GAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCT : 457340 192 : SerValTyrLeuAlaCysAspThrAsnLeuValGlnIleValHisHisGlyCysAlaL : 211 !!!..!! !||| !!!::!! |||:!! !! !|||! |||! !|||!.!| ThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyL 457341 : ACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGAT : 457400 212 : euLeuAlaIleSer : 215 ||!!! !:!!!!! euPheLysLeuThr 457401 : TGTTCAAGCTTACT : 457414 vulgar: AmOr108 133 215 . KQ414815.1 457168 457414 + 125 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457169 457414 125 + . gene_id 3 ; sequence AmOr108 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457169 457414 . + . KQ414815.1 exonerate:protein2genome:local exon 457169 457414 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457169 457414 125 + . alignment_id 3 ; Query AmOr108 ; Align 457169 134 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 128 -> 214 Target range: 475512 -> 475770 129 : ValIleValIlePheSerAlaIleMetPheIleMetIleProThrIleProProIleL : 148 |||:!:||| ! !!! !.!!! .!.|||:!!:!!! ! ! !! !|||| ValLeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerSerLysIleL 475513 : GTACTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGTCTAAGATCC : 475570 149 : euAsnIleIleMetProLeuAsnGluSerArgAspArgGluPheIleTyrProThrTy : 167 ||:!! !:!::!:|||||||||||||||||| !!!! !! !:!: euAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleArgIleGl 475571 : TTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaataga : 475627 168 : rPhePheIleAspGluGluLysTyrTyrTyrProIleLeuThrTyrMetAlaThrVal : 186 :::||||||:::|||:!!||||||!:!|||! !! !:!!! !|||..!.!!..!..! uTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrValThr 475628 : atatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGTAACG : 475684 187 : IleLeuIleValSerSerValTyrLeuAlaCysAspThrAsnLeuValGlnIleValH : 206 ||||||:!: !!.!!!!!..!|||:!!||| !!!:.!!! !!!..!..! :!!! IleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrpLeuG 475685 : ATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGGTTGC : 475744 207 : isHisGlyCysAlaLeuLeuAlaIle : 214 !.||| !! :::|||... ||| lnHisCysIleSerLeuPheGluIle 475745 : AACATTGCATaagtttatttgaaatt : 475770 vulgar: AmOr108 128 214 . KQ414815.1 475512 475770 + 109 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475513 475770 109 + . gene_id 4 ; sequence AmOr108 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475513 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475513 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475513 475770 109 + . alignment_id 4 ; Query AmOr108 ; Align 475513 129 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 128 -> 214 Target range: 481977 -> 482235 129 : ValIleValIlePheSerAlaIleMetPheIleMetIleProThrIleProProIleL : 148 ..!:!!:!! ! |||!.!:!:!!:.!.|||:!! !! !! ! ! !:!!| AlaLeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerPheValL 481978 : gcGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTC : 482035 149 : euAsnIleIleMetProLeuAsnGluSerArgAspArgGluPheIleTyrProThrTy : 167 ||:!!:!!|||:!:||||||||||||!!!||| !.!:!!||| ! !!! ! ! euAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMetGl 482036 : TAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGA : 482092 168 : rPhePheIleAspGluGluLysTyrTyrTyrProIleLeuThrTyrMetAlaThrVal : 186 !:!|||||||||:!!:!!||||||! ! !||| ! !:!!..! ! ! ! uTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSer 482093 : GTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCC : 482149 187 : IleLeuIleValSerSerValTyrLeuAlaCysAspThrAsnLeuValGlnIleValH : 206 .!!|||:!!|||:!!!!!:!! !:!!!.! !!:||| :!!|||..! :!!. PheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuG 482150 : TTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTG : 482209 207 : isHisGlyCysAlaLeuLeuAlaIle : 214 !.|||!.!...::!|||!!!.!!:!! luHisAlaAlaSerLeuPheThrLeu 482210 : AACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: AmOr108 128 214 . KQ414815.1 481977 482235 + 107 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481978 482235 107 + . gene_id 5 ; sequence AmOr108 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481978 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481978 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481978 482235 107 + . alignment_id 5 ; Query AmOr108 ; Align 481978 129 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 146 -> 216 Target range: 485722 -> 485932 147 : IleMetAsnValIleMetProLeuAsnGluSerArgSerArgGluLeuValTyrProS : 166 |||:!!:!!:!!:!:!!:||||||||| ! !!!||| !!||| !:!! ! !| IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 167 : erTyrTyrPheValAspGluGlnLysTyrTyrTyrLeuIleThrGlyHisMetLeuAl : 185 || ! :!!|||||||||:!!|||||||||!:!|||! !|||.!!!.!|||:!::!! erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 186 : aValCysLeuGlyHisValPheValTyrIleAlaCysAspIleAsnLeuIleHisVal : 204 ! !! !:!! ! !!.!.!.|||! :!!::! :::||| :::::: :!! uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 205 : ValHisHisGlyCysAlaLeuLeuThrIleSerGly : 216 :!!!!.||| !|||!.!|||! !|||||| !||| IleGlnHisThrCysGlyLeuTyrThrIleValGly 485895 : ATACAGCACACCTGTGGTTTGTATACAATCGTTGGG : 485932 vulgar: AmOr107 146 216 . KQ414815.1 485722 485932 + 133 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485932 133 + . gene_id 1 ; sequence AmOr107 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485932 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485932 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485932 133 + . alignment_id 1 ; Query AmOr107 ; Align 485723 147 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 124 -> 215 Target range: 457141 -> 457414 125 : SerPheTyrGluValSerIleTyrSerCysGlyPheMetPheLeuSerMetProSerI : 144 |||.!. ! !||||||! !|||!!! !!!.!.!.:!:.!! !!!!:!!! ! !. SerMetIleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuP 457142 : tcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCT : 457199 145 : leProLeuIleMetAsnValIleMetProLeuAsnGluSerArgSerArgGluLeuVa : 163 !!|||:!!:!!:!::!!:!!:!::!:|||||||||||||||||| !! !!|||||| heProIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTy 457200 : TTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATA : 457256 164 : lTyrProSerTyrTyrPheValAspGluGlnLysTyrTyrTyrLeuIleThrGlyHis : 182 ! ! !!:!! ! |||||||||||| !:!!|||||| :!!! !|||! !!.!||| rLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHis 457257 : CCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCAC : 457313 183 : MetLeuAlaValCysLeuGlyHisValPheValTyrIleAlaCysAspIleAsnLeuI : 202 !!::!!.!! ! ||| ! !.! !..!! ! !||| !!!: ! |||| IleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuI 457314 : ATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTA : 457373 203 : leHisValValHisHisGlyCysAlaLeuLeuThrIleSer : 215 || !|||! |||! !|||!.!|||!!!! !:!!!!! leThrAsnValLeuHisValCysGlyLeuPheLysLeuThr 457374 : TAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTTACT : 457414 vulgar: AmOr107 124 215 . KQ414815.1 457141 457414 + 127 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457142 457414 127 + . gene_id 2 ; sequence AmOr107 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457142 457414 . + . KQ414815.1 exonerate:protein2genome:local exon 457142 457414 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457142 457414 127 + . alignment_id 2 ; Query AmOr107 ; Align 457142 125 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 130 -> 214 Target range: 481983 -> 482235 131 : IleTyrSerCysGlyPheMetPheLeuSerMetProSerIleProLeuIleMetAsnV : 150 |||||| !!! ! !!!.!!:.!.:!! ! ! !! ! !!!!:!!:!::!!| IleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspV 481984 : ATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACG : 482041 151 : alIleMetProLeuAsnGluSerArgSerArgGluLeuValTyrProSerTyrTyrPh : 169 |||||:!:||||||||||||!!!|||!!!!.!:!!!!! ! !!! ! ! ||||| alIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPh 482042 : TCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTT : 482098 170 : eValAspGluGlnLysTyrTyrTyrLeuIleThrGlyHisMetLeuAlaValCysLeu : 188 |:!!|||:!!|||||||||! !!!!|||||| !|||..!! ! ! !! !||| eIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeu 482099 : CATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTC : 482155 189 : GlyHisValPheValTyrIleAlaCysAspIleAsnLeuIleHisValValHisHisG : 208 ! ! !!.! :!! !:!!!.! !!:! ! :!!:!! !:!!.!.|||! ValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisA 482156 : GTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACG : 482215 209 : lyCysAlaLeuLeuThrIle : 214 .!...::!|||!!!|||:!! laAlaSerLeuPheThrLeu 482216 : CTGCAAGCTTGTTCACCCTT : 482235 vulgar: AmOr107 130 214 . KQ414815.1 481983 482235 + 102 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481984 482235 102 + . gene_id 3 ; sequence AmOr107 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481984 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481984 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481984 482235 102 + . alignment_id 3 ; Query AmOr107 ; Align 481984 131 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr102 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 145 -> 227 Target range: 475527 -> 475770 146 : AlaLeuValLeuPheLeuLeuIleProLeuIleSerProMetLeuAspValPheLeuP : 165 .!!:!! !! !.!.:!!|||:!!! !!!! ||| !!!:|||||| !!!.|||| ThrIlePheThrMetIleLeuLeuLeuPheSerSerLysIleLeuAspSerLeuLeuP 475528 : ACAATATTCACCATGATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTAC : 475585 166 : roLeuAsnGluThrArgProArgGlnGlnLeuLeuLysValAsnTyrLeuValPheAs : 184 |||||||||||:!!||||||!!! !...|||:::::::::...|||...::: || roLeuAsnGluSerArgProSerTrpSerLeuIleArgIleGluTyrPheIle---As 475586 : CCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaatagaatatttcata---aa : 475639 185 : nAspAspAspTyrPhePheTyrValTyrLeuGlnLeuAlaTrpGlySerIleIleVal : 203 |!!:.!. ! ||||||!:! ! :!! ! ! !.!! !! !:!!:!: !! nGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrValThrIleLeuLeuPhe 475640 : cGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGTAACGATCCTTCTGTTT : 475696 204 : ValValThrSerValAlaValAspSerLeuLeuIleLeuIleIleHisHisCysSerG : 223 ! !..!|||! !||||||..!!!::!!:!!!!!! !:!! :!:!!.||||||! . GlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrpLeuGlnHisCysIleS 475697 : GGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGGTTGCAACATTGCATaa : 475756 224 : lyLeuPheThrVal : 227 ..|||||| ::: erLeuPheGluIle 475757 : gtttatttgaaatt : 475770 vulgar: AmOr102 145 227 . KQ414815.1 475527 475770 + 108 M 37 111 G 1 0 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475528 475770 108 + . gene_id 1 ; sequence AmOr102 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475528 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475528 475770 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 475528 475770 108 + . alignment_id 1 ; Query AmOr102 ; Align 475528 146 111 ; Align 475639 184 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr102 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 145 -> 227 Target range: 481992 -> 482235 146 : AlaLeuValLeuPheLeuLeuIleProLeuIleSerProMetLeuAspValPheLeuP : 165 :!!:!!:!!:!!.!.:!!||| !! !:!! ||| !:!:|||||||||.!!:!!| SerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValP 481993 : TCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTC : 482050 166 : roLeuAsnGluThrArgProArgGlnGlnLeuLeuLysValAsnTyrLeuValPheAs : 184 ||||||||||||||||| !!!.!||| ! !:!!..!:!!.!.|||!!!:!! :! roLeuAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPheIle---As 482051 : CTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATT---GA : 482104 185 : nAspAspAspTyrPhePheTyrValTyrLeuGlnLeuAlaTrpGlySerIleIleVal : 203 !.!..!. ! |||! .!!!:!:!! !!!!!.! ! !!::..!! !:!!:!!||| pGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValVal 482105 : CCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTC : 482161 204 : ValValThrSerValAlaValAspSerLeuLeuIleLeuIleIleHisHisCysSerG : 223 !.!..!! !! !|||!.!:!!!!:!!!|||:!!:!!:!! :!!.!.|||..!:!!. AlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaS 482162 : GCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAA : 482221 224 : lyLeuPheThrVal : 227 !!|||||||||:!! erLeuPheThrLeu 482222 : GCTTGTTCACCCTT : 482235 vulgar: AmOr102 145 227 . KQ414815.1 481992 482235 + 102 M 37 111 G 1 0 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481993 482235 102 + . gene_id 2 ; sequence AmOr102 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481993 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481993 482235 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 481993 482235 102 + . alignment_id 2 ; Query AmOr102 ; Align 481993 146 111 ; Align 482104 184 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr99 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 347 -> 389 Target range: 479691 -> 479817 348 : TyrAspSerThrTrpTyrGlyThrSerLeuGluIleGlnLysMetLeuTyrMetMetG : 367 !:!:!!|||!.!||||||! !||||||||| !||||||||||||||||||! ||| PheAsnSerAsnTrpTyrGluThrSerLeuThrIleGlnLysMetLeuTyrThrMetV 479692 : TTTAACAGCAATTGGTATGAAACTTCCTTAACGATCCAGAAAATGTTGTACACCATGG : 479749 368 : lnIleArgSerLysLysLeuCysAlaLeuThrAlaGlyGlyLeuTyrAspMetAsnIl : 386 !:!:||||||!..|||! ! !:!!||| ! !|||!!!||| !! !::!:! alLeuArgSerSerLysSerMetLeuValThrPhePheGlyPheTyrTyrAlaSerVa 479750 : TGTTGAGAAGCAGTAAATCAATGCTTGTTACGTTTTTCGGGTTTTACTACGCGTCTGT : 479806 387 : eGluAsnPhe : 389 ::!!..!||| lGlnGlyPhe 479807 : GCAAGGTTTT : 479817 vulgar: AmOr99 347 389 . KQ414815.1 479691 479817 + 102 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 479692 479817 102 + . gene_id 1 ; sequence AmOr99 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 479692 479817 . + . KQ414815.1 exonerate:protein2genome:local exon 479692 479817 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 479692 479817 102 + . alignment_id 1 ; Query AmOr99 ; Align 479692 348 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 89 -> 215 Target range: 456822 -> 457414 90 : LeuArgGluLeuLeuHisAspIleValSerAspArgLeuIleGluArgSerLysGluG : 109 :!!||||||:!!! ! !!:!!|||!.!..!||| !! ! ! !!:!!:!! !|||| IleArgGluIleTyrAspAsnIleAlaAspAspTrpLysSerLeuLysAsnMetGluG 456823 : ATACGGGAGATTTACGACAATATCGCTGACGATTGGAAATCATTGAAGAACATGGAAG : 456880 110 : luLeuGluIleLeuGluMetTyrSerArgArgThrThrAlaLeuCysAlaLeuTyrLy : 128 ||:!!||||||:::... |||::!!.! !! !! ! !!!! ! ! luIleGluIleIleArgLysTyrAlaAsnGlyGlyArgArgPheThrLeuAlaIleAl 456881 : AAATCGagattattcgaaaatatgcGAACGGTGGCAGGAGATTTACACTTGCAATAGC : 456937 129 : s{V} >>>> Target Intron 1 >>>> {al}MetValTyrSerCysAlaPhe : 136 !{:} 214 bp {!!} ..!|||!!! !!|||.!. a{I}++ ++{le}SerThrTyrCysGlyAlaLeu 456938 : A{A}gt.........................ag{TT}TCTACTTATTGTGGCGCACTG : 457175 137 : MetPheLeuValIleProThrIleProProIleLeuAsnIleValAlaProLeuAsnV : 156 :!:.!! !..!:!:! ! !.!!||| !:!!|||:!!||||||!.!|||||||||! ValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnG 457176 : GTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACG : 457235 157 : alSerArgSerArgGluPheIleTyrProThrTyrTyrPheValAspGluGlnLysTy : 175 !|||||| !! !!|||!!. ! ! !!.!! ! |||||||||||| !:!!||||| luSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTy 457236 : AATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTA : 457292 176 : rTyrTyrProIleLeuThrHisMetIleAlaValIleLeuValLeuSerSerValTyr : 194 | :!! !|||:!!.!!|||!!:|||.!! !:!!|||:!! !:!!!!!..!! rMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeu 457293 : TATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTA : 457349 195 : LeuAlaCysAspThrAsnLeuValGlnIleValHisHisGlyCysAlaLeuLeuAlaI : 214 !||| !!!::!! |||:!! !! !|||! |||! !|||!.!|||!!! !: ThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysL 457350 : ACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGC : 457409 215 : leSer : 215 !!!!! euThr 457410 : TTACT : 457414 vulgar: AmOr109 89 215 . KQ414815.1 456822 457414 + 145 M 39 117 S 0 1 5 0 2 I 0 210 3 0 2 S 1 2 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 456823 457414 145 + . gene_id 1 ; sequence AmOr109 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 456823 456940 . + . KQ414815.1 exonerate:protein2genome:local exon 456823 456940 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 456941 456942 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 456941 457154 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457153 457154 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457155 457414 . + . KQ414815.1 exonerate:protein2genome:local exon 457155 457414 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 456823 457414 145 + . alignment_id 1 ; Query AmOr109 ; Align 456823 90 117 ; Align 457157 130 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 146 -> 216 Target range: 485722 -> 485932 147 : IleLeuAsnIleValAlaProLeuAsnValSerArgSerArgGluPheIleTyrProT : 166 ||||||:!!|||:!! !||||||||| !!!!||| !!||| !.!! ! !: IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 167 : hrTyrTyrPheValAspGluGlnLysTyrTyrTyrProIleLeuThrHisMetIleAl : 185 !! ! :!!|||||||||:!!|||||||||!:!||||||||| !.!!|||:!::!! erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 186 : aValIleLeuValLeuSerSerValTyrLeuAlaCysAspThrAsnLeuValGlnIle : 204 ! !!:!!:!!:!! !:!!! !|||! |||::! ::: :::::: !||| uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 205 : ValHisHisGlyCysAlaLeuLeuAlaIleSerGly : 216 :!!!!.||| !|||!.!|||! !.!!||| !||| IleGlnHisThrCysGlyLeuTyrThrIleValGly 485895 : ATACAGCACACCTGTGGTTTGTATACAATCGTTGGG : 485932 vulgar: AmOr109 146 216 . KQ414815.1 485722 485932 + 141 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485932 141 + . gene_id 2 ; sequence AmOr109 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485932 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485932 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485932 141 + . alignment_id 2 ; Query AmOr109 ; Align 485723 147 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 115 -> 211 Target range: 467596 -> 467884 116 : TyrSerArgArgThrThrAlaLeuCysAlaLeuTyrLysValMetValTyrSerCysA : 135 !:!!:!||| !! !:!!..!! ......:::...||| :!! ! !! ! PheAsnArgLeuIleSerCysCysValThrPhePheSerValTyrLeuIleProIleI 467597 : TTCAATCGTTTAATCTCTTGTTgcgttacatttttttcagtgTACTTAATTCCAATCA : 467654 136 : laPheMetPheLeuValIleProThrIleProProIleLeuAsnIleValAlaProLe : 154 !.!. !!:!!:!!:!!||| ! |||...|||||||||.!! !!|| leIleAlaValIleLeuLeuProPheTyrAspIleIlePheAsnIleValThrSerLe 467655 : TTATAGCCGTTATATTATTACCATTCTacgatataattttcaatattgtaaCATCGTT : 467711 155 : uAsnValSerArgSerArgGluPheIleTyrProThrTyrTyrPheValAspGluGln : 173 |||||||||||||..!! !|||!!. ! ! ! ! ! ||||||..!||||||... uAsnValSerArgGluIleGluLeuProAlaAspLeuGluTyrPheThrAspGluSer 467712 : GAACGTATCACGTGAGATTGAATTACCTGCTGATCTTGAGTACTTTACAGACGAAAGC : 467768 174 : LysTyrTyrTyrProIleLeuThrHisMetIleAlaValIleLeuValLeuSerSerV : 193 ||||||||| ! !! !||| !|||:!!:!!::! ! !:!!..! ! !!!!| LysTyrTyrProIleLysLeuLeuHisValValSerHisAlaIleThrGlyValThrV 467769 : AAGTATTATCCTATTAAACTGTTACATGTGGTTAGTCATGCTATCACTGGAGTGACGG : 467828 194 : alTyrLeuAlaCysAspThrAsnLeuValGlnIleValHisHisGlyCysAlaLeu : 211 || :!! ! !|||!:!!..|||:!! !.!!:!!!!.:!!..!||||||||| alValIlePheIleAspSerThrLeuLeuIlePheLeuGlnTyrSerCysAlaLeu 467829 : TTGTGATTTTCATTGATAGTACGTTGTTGATATTCCTCCAATATTCTTGTGCGCTC : 467884 vulgar: AmOr109 115 211 . KQ414815.1 467596 467884 + 118 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 467597 467884 118 + . gene_id 3 ; sequence AmOr109 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 467597 467884 . + . KQ414815.1 exonerate:protein2genome:local exon 467597 467884 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 467597 467884 118 + . alignment_id 3 ; Query AmOr109 ; Align 467597 116 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 128 -> 214 Target range: 481977 -> 482235 129 : ValMetValTyrSerCysAlaPheMetPheLeuValIleProThrIleProProIleL : 148 ..!:!::!!||| !!! !.!!!.!!:.!.:!!:!! !! !! ! ! !:!!| AlaLeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerPheValL 481978 : gcGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTC : 482035 149 : euAsnIleValAlaProLeuAsnValSerArgSerArgGluPheIleTyrProThrTy : 167 ||:!!:!!:!!!.!|||||||||! !!!!|||!!!!.!:!!||| ! !!! ! ! euAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMetGl 482036 : TAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGA : 482092 168 : rTyrPheValAspGluGlnLysTyrTyrTyrProIleLeuThrHisMetIleAlaVal : 186 ||||||:!!|||:!!|||||||||! ! !||| ! !|||..! ! ! uTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSer 482093 : GTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCC : 482149 187 : IleLeuValLeuSerSerValTyrLeuAlaCysAspThrAsnLeuValGlnIleValH : 206 .!!||||||:!!:!!!!!:!! !:!!!.! !!:||| :!!|||..! :!!. PheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuG 482150 : TTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTG : 482209 207 : isHisGlyCysAlaLeuLeuAlaIle : 214 !.|||!.!...::!|||!!!.!!:!! luHisAlaAlaSerLeuPheThrLeu 482210 : AACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: AmOr109 128 214 . KQ414815.1 481977 482235 + 111 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481978 482235 111 + . gene_id 4 ; sequence AmOr109 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481978 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481978 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481978 482235 111 + . alignment_id 4 ; Query AmOr109 ; Align 481978 129 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 125 -> 214 Target range: 475503 -> 475770 126 : LeuTyrLysValMetValTyrSerCysAlaPheMetPheLeuValIleProThrIleP : 145 ::: !! !|||:!!|||||| !! !|||! .!.:!!:!!:!!! ! ! IleValThrValLeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerS 475504 : attgtTACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGT : 475561 146 : roProIleLeuAsnIleValAlaProLeuAsnValSerArgSerArgGluPheIleTy : 164 !! !||||||:!! !:!! !|||||||||! !|||||| !!!!! !! !:!: erLysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIl 475562 : CTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAt : 475618 165 : rProThrTyrTyrPheValAspGluGlnLysTyrTyrTyrProIleLeuThrHisMet : 183 ||||||::::::||||||||||||!:!|||! !! !:!!! !:!!..! eArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGln 475619 : acgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAG : 475675 184 : IleAlaValIleLeuValLeuSerSerValTyrLeuAlaCysAspThrAsnLeuValG : 203 ! !!.!..!||||||:!!!!!.!!!!!..!|||:!!||| !!!:.!!! !!!..!. ThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrM 475676 : ACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCA : 475735 204 : lnIleValHisHisGlyCysAlaLeuLeuAlaIle : 214 .! :!!!!.||| !! :::|||... ||| etTrpLeuGlnHisCysIleSerLeuPheGluIle 475736 : TGTGGTTGCAACATTGCATaagtttatttgaaatt : 475770 vulgar: AmOr109 125 214 . KQ414815.1 475503 475770 + 110 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475504 475770 110 + . gene_id 5 ; sequence AmOr109 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475504 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475504 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475504 475770 110 + . alignment_id 5 ; Query AmOr109 ; Align 475504 126 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr93PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 770 Query range: 39 -> 377 Target range: 16150 -> 19906 40 : AsnLeuZedMetTyrPheIleLeuGlyAspPheSerAlaCysLeuPhePheIleSerIle : 59 ||| ...::::!!!!..!!||| ! !!!...!|||||||||!:! ! !!!!! ! AsnAsnAsnLeuHisLeuPheLeuPheArgLeuGlnAlaCysLeuTyrThrAlaCysAsn 16151 : aataataacttgCACTTATTCCTTTTCCGTTTGCAGGCCTGTTTATATACTGCATGCAAC : 16208 60 : IleLeuSerSerIleMetLeuLeuLeuLysIleIleIleLeuPheSerHisArgGluAsp : 79 |||||||||! !! !!!:! !!!!|||||||||:!!:!!|||.!!:!!|||:::...||| IleLeuSerLeuThrIleProPheLeuLysIleLeuValLeuLeuAlaHisLysAsnAsp 16209 : ATTTTATCGTTAACAATACCGTTTCTCAAGATACTCGTCTTGCTTGCAcacaaaaatgat : 16268 80 : PhePheHisLeuIleLeuTyrMetLysArgAsnPheLeu<->UnkAsnTyrAspAspHis : 98 ||||||||||||||||||:!!:!::!!|||.!.|||||| ...:!!|||||||||:!! PhePheHisLeuIleLeuHisLeuGlnArgGluPheLeuHisAlaAspTyrAspAspTyr 16269 : ttttttcatttgattcTGCACCTACAACGAGAATTCTTGCATGCAGATTACGACGACTAC : 16328 99 : GluArgLys<->MetIleGlyCysAsnZedLysCysThr-SerSerSerValSerSerAr : 117 |||!:!||| :!!:!!||||||.!....:!!||||||#||||||! !|||||||||!. GluLysLysIleLeuLeuGlyCysGlnArgGlnCysThr#SerSerPheValSerSerHi 16329 : GAGAAAAAGATTTTGCTCGGTTGCCAACGTCAATGTACCTTCTTCGTTTGTTTCTTCACA : 16389 118 : gPheSerArgTrpArgProLeuLeuLeuThrSerSerValArgLeuLeuVal{L} >>> : 135 !||||||! ! !..!! !|||! !! !||||||! !:!!||||||||||||{!} sPheSerLeuLysGluLeuLeuSerArgThrSerLeuIleArgLeuLeuVal{T}++ 16390 : CTTTTCACTAAAGGAACTGTTATCTCGTACATCGTTAATCCGCTTATTGGTA{A}gt... : 16446 136 : > Target Intron 1 >>>> {ys}AsnIleGlyLysAsnGluSerAspArgIleLe : 146 1382 bp { !}|||||||||||||||||||||!!:|||||||| ++{hr}AsnIleGlyLysAsnGluSerGluArgIleLe 16447 : ......................ag{ca}aatattggaaaaaatgagTCAGAGAGGATACT : 17858 147 : uProPheAsnMetTrpValAsnLeuLeuLeuAsnIleThrSerTyrPheGluIleThrTy : 166 |||||||||||||||||||||||||! !|||:::!!:||| !!|||!:!|||||||||:: uProPheAsnMetTrpValAsnLeuProLeuSerMetThrProTyrTyrGluIleThrPh 17859 : TCCATTTAATATGTGGGTCAACTTGCCATTATCAATGACGCCATATTACgaaataacttt : 17918 167 : rThrLeuGlnUnkPhe >>>> Target Intron 2 >>>> SerLeuSerLeuTyr : 176 ::::|||||| ... 104 bp !|||||||||||| eSerLeuGlnValLeu-+ ++ValLeuSerLeuTyr 17919 : ttcattaCAGGTAttgtt.........................aggtTCTGTCTCTGTAC : 18052 177 : HisIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisVal : 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||!.! HisIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisAla 18053 : CATATTGGCGTGAGTTATTTCTgcttcgacaattttttatgcatCATGAACTTGCACGCG : 18112 197 : AlaGlyGlnPheGlnValLeuGlnTyrArgIleSerAsnIleIleTyrUnkArgPheAsn : 216 ||| !||||||!:!|||||||||||||||!!::!!|||!!:! ! !! !:! ... AlaThrGlnPheArgValLeuGlnTyrArgMetAlaAsnMetThrAspLeuLysAspLys 18113 : GCTACTCAGTTTCGAGTATTGCAATACCGAATGGCGAATATGACCGATTTAAAGGacaaa : 18172 217 : GluLysLysGlu<-><-><->LysLeuIleValAspSerUnk<-><->AlaThrLysCys : 231 |||:::|||||| ||| !! !|||..!|||... ||||||:!!||| GluArgLysGluArgAsnMetLysThrSerValSerSerAlaCysPheAlaThrGluCys 18173 : gagaggaaagagagaaatatgaAGACAAGTGTGAGTTCGGCGTGCTTTGCAACAGAATGT : 18232 232 : TyrAlaIlePheLysLysUnkGlnHisGlnAlaLeuIleTyrLeuIleTyrCysArgLys : 251 ||| !:!!.!!||| ! ...||| !! !! ! :!! !||||||!.!||| TyrAsnValLeuLysAspTyrIleArgGlnHisGlnAsnLeuIleAlaTyrCysAsnLys 18233 : TACAACGTTCTCAAAGATTATATCAGACAGCATCAGAACCTGATTGCTTATTGCAACAAA : 18292 252 : LeuGluGluValPheAsnLeuIleValLeuGluGlnValLeuMetPheSerLeuLeuIle : 271 ||||||:!!|||||||||:!!|||||||||! !|||:!!||||||||||||:!!|||||| LeuGluLysValPheAsnIleIleValLeuGlyGlnLeuLeuMetPheSerMetLeuIle 18293 : CTCGAGAAAGTGTTCAATATCATTGTTCTGGGGCAATTGTTAATGTTCAGCATGTTGATC : 18352 272 : CysLeuAspGlyTyrGlnIleLeuMet >>>> Target Intron 3 >>>> AlaA : 282 ||||||||||||!:!|||||||||||| 975 bp |||: CysLeuAspGlyPheGlnIleLeuMet++ ++AlaA 18353 : TGTCTCGATGGATTTCAGATACTTATGgt.........................agGCAA : 19360 283 : spGlyAspValLysThrArgLeuIlePheSerPheHisIleLeuGlyPheLeuCysGlnL : 302 !! ! !..!!:!|||||||||||||||! !||||||||| !!.!! !:!!||||||| snThrProThrArgThrArgLeuIlePheIlePheHisIleGlyAlaCysMetCysGlnL 19361 : ATACACCTACCAGAACCCGACTGATTTTCATCTTTCACATAGGAGCATGCATGTGTCAAT : 19420 303 : euLeuMetPheSerTyrSerCysAspCysIleIleArgTrpThrLeuUnkPro{L} >> : 320 |||||||||||!!!|||||||||||||||||||||||| !:! !... !!{:} euLeuMetPheThrTyrSerCysAspCysIleIleArgGluSerThrSerThr{V}-- 19421 : TGCTGATGTTTACCTACAGCTGCGACTGCATCATAAGAGAAAGCACGAGCACC{G}cc.. : 19477 321 : >> Target Intron 4 >>>> {eu}LeuSerMetThrSerSerArgArgMetIleA : 331 30 bp {!!}||| !!|||!:!:!!..! !!!:!||||||| +-{al}LeuProMetSerAlaAspGlyLysMetIleA 19478 : .......................ac{TT}TTACCAATGAGCGCAGACGGAAAAATGATAA : 19537 332 : rgLysAspLeuIleLeuValIleMetArgSerAsnValProCysTyrLeuThrGlyArgG : 351 |||||||||||!!:||||||||||||||||||!:!|||||||||! !||||||!.!|||| rgLysAspLeuMetLeuValIleMetArgSerSerValProCysCysLeuThrAlaArgG 19538 : GGAAAGATTTGATGCTCGTTATCATGAGATCGAGCGTACCTTGTTGCTTGACAGCCAGAG : 19597 352 : lyPhePheIleValSerLeuGluMetTyrUnk >>>> Target Intron 5 >>>> : 362 ||||||||:!!||||||||||||! !|||... 226 bp lyPhePheValValSerLeuGluThrTyrThr+- + 19598 : GATTCTTCGTCGTGTCTTTAGAAACGTACACAgg.........................a : 19854 363 : ValLeuSerThrAlaAlaUnk<->PheThrLeuLeuLysGlnArgThrGlu : 377 ||||||||||||||||||... |||||||||||||||||||||:!!||| +ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuLysGlnArgSerGlu 19855 : gGTTTTAAGCACCGCAGCCTCATACTTTACGTTGCTGAAGCAAAGATCAGAG : 19906 vulgar: AmOr93PSE 39 377 . KQ414828.1 16150 19906 + 770 M 53 159 G 0 3 M 9 27 G 0 3 M 9 27 F 0 1 M 24 72 S 0 1 5 0 2 I 0 1378 3 0 2 S 1 2 M 36 108 5 0 2 I 0 100 3 0 2 M 49 147 G 0 9 M 7 21 G 0 6 M 53 159 5 0 2 I 0 971 3 0 2 M 39 117 S 0 1 5 0 2 I 0 26 3 0 2 S 1 2 M 41 123 5 0 2 I 0 222 3 0 2 M 7 21 G 0 3 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 16151 19906 770 + . gene_id 1 ; sequence AmOr93PSE ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 16151 16443 . + . KQ414828.1 exonerate:protein2genome:local exon 16151 16443 . + . insertions 6 ; deletions 0 ; frameshifts 1 KQ414828.1 exonerate:protein2genome:local splice5 16444 16445 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 16444 17825 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 17824 17825 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 17826 17935 . + . KQ414828.1 exonerate:protein2genome:local exon 17826 17935 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17936 17937 . + . intron_id 2 ; splice_site "tt" KQ414828.1 exonerate:protein2genome:local intron 17936 18039 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18381 . + . insertions 15 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19474 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19474 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19475 19476 . + . intron_id 4 ; splice_site "CC" KQ414828.1 exonerate:protein2genome:local intron 19475 19504 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 19503 19504 . + . intron_id 3 ; splice_site "AC" KQ414828.1 exonerate:protein2genome:local cds 19505 19629 . + . KQ414828.1 exonerate:protein2genome:local exon 19505 19629 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19630 19631 . + . intron_id 5 ; splice_site "GG" KQ414828.1 exonerate:protein2genome:local intron 19630 19855 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19906 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19906 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 16151 19906 770 + . alignment_id 1 ; Query AmOr93PSE ; Align 16151 40 159 ; Align 16313 93 27 ; Align 16343 102 27 ; Align 16371 111 72 ; Align 17828 136 108 ; Align 18040 172 147 ; Align 18196 221 21 ; Align 18223 228 159 ; Align 19357 281 117 ; Align 19507 321 123 ; Align 19856 362 21 ; Align 19880 369 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr93PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 520 Query range: 135 -> 377 Target range: 2882 -> 6468 136 : AsnIleGlyLysAsnGluSerAspArgIleLeuProPheAsnMetTrpValAsnLeuLeuLe : 156 !::||||||||||||||||||||||||:!!||| ! !!|||.!.|||:!!:!!|||! !:! SerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuProIl 2883 : AgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCCGAT : 2943 157 : uAsnIleThrSerTyrPheGluIleThrTyrThrLeuGln >>>> Target Intron 1 : 170 !!.!|||||| !!|||:::|||||| :::|||:!!||| 406 bp eThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2944 : AACCATCACACCATactatgaaatattatttacgaTACAGgt.................... : 2987 171 : >>>> UnkPheSerLeuSerLeuTyrHisIleGlyValSerTyrPheCysPheAspAsnP : 188 ||| ! !:!! :!!:!! !!:!!||||||.!!|||.!!||||||| ++IlePhe------IleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnP 2988 : .....agATTTTT------ATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATT : 3439 189 : heLeuCysIleMetAsnLeuHisValAlaGlyGlnPheGlnValLeuGlnTyrArgIleSer : 208 ||||||||!!:!!:|||||||||..!||| !||||||!:!:!!||||||||||||:!:||| heLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSer 3440 : TTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCG : 3499 209 : AsnIleIleTyrUnkArgPheAsnGluLysLysGluLysLeuIleValAspSerUnkAlaTh : 229 |||:!: ! !...!.! ..!... ||| ... ... ||| :!! AsnValCysGlyAlaAsnGluArgSerAspLysIleSerLysLysThrProSerAsnSerAs 3500 : AATGTGTGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTCGGA : 3562 230 : rLysCysTyrAlaIlePheLysLysUnkGlnHisGlnAlaLeuIleTyrLeuIleTyrCysA : 250 !:!!|||||||||! ||||||!!. !!.||| !! ! ! !:!! !||||||! pGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysA 3563 : CGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTA : 3625 251 : rgLysLeuGluGluValPheAsnLeuIleValLeuGluGlnValLeuMetPheSerLeuLeu : 270 .!||||||:!!|||||||||..!:!!.!!||||||! !|||||||||:!:|||||||||||| snLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeuLeu 3626 : ACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTA : 3685 271 : IleCysLeuAspGlyTyrGlnIleLeuMet >>>> Target Intron 2 >>>> Ala : 281 !!:||||||||||||||| :!::!!||| 457 bp ! ! MetCysLeuAspGlyTyr---LeuValMet++ ++Glu 3686 : ATGTGCCTCGATGGATAT---TTGGTGATGgt.........................agGAA : 4172 282 : AspGlyAspValLysThrArgLeuIlePheSerPheHisIleLeuGlyPheLeuCysGlnLe : 302 ||| ! !:!!! ! !||||||! !|||! !||||||:!! !|||! !||||||||||| AspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLe 4173 : GATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACT : 4235 303 : uLeuMetPheSerTyrSerCysAspCysIleIleArgTrpThrLeuUnk >>>> Target : 319 ||||||||||!!!|||||||||||||||:!:|||||| !:!||| 3 uLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsn++ 4236 : GTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACgt........... : 4288 320 : Intron 3 >>>> ProLeuLeuSerMetThrSerSerArgArgMetIleArgLysAspL : 334 0 bp !! !||| !!||| !!!!||| !!||||||:!:|||||||||| -+IleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAspL 4289 : ..............ggATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATT : 4361 335 : euIleLeuValIleMetArgSerAsnValProCysTyrLeuThrGlyArgGlyPhePheIle : 354 ||! !!!!|||||| ||||||!..|||||||||! !||||||!.! !!||||||||| ! euThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePhePro 4362 : TGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCT : 4421 355 : ValSerLeuGluMetTyr<->Unk >>>> Target Intron 4 >>>> ValLeuSer : 364 ||||||||||||! !||| ... 1970 bp |||:!!||| ValSerLeuGluThrTyrThrSer++ ++ValIleSer 4422 : GTGTCACTGGAAACGTACACTTCGgt.........................agGTTATAAGT : 6424 365 : ThrAla<->AlaUnkPheThrLeuLeuLysGlnArgThrGlu : 377 |||||| :!! ||||||||||||!:!||||||! !||| ThrAlaValSerTyrPheThrLeuLeuArgGlnArgIleGlu 6425 : ACAGCAGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAG : 6468 vulgar: AmOr93PSE 135 377 . KQ414828.1 2882 6468 + 520 M 34 102 5 0 2 I 0 402 3 0 2 M 2 6 G 2 0 M 103 309 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 38 114 5 0 2 I 0 26 3 0 2 M 42 126 G 0 3 M 1 3 5 0 2 I 0 1966 3 0 2 M 5 15 G 0 3 M 11 33 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2883 6468 520 + . gene_id 2 ; sequence AmOr93PSE ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2883 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2883 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 0 ; deletions 3 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4285 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4285 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4286 4287 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4286 4315 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 4314 4315 . + . intron_id 2 ; splice_site "GG" KQ414828.1 exonerate:protein2genome:local cds 4316 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4316 4447 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6468 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6468 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2883 6468 520 + . alignment_id 2 ; Query AmOr93PSE ; Align 2883 136 102 ; Align 3391 170 6 ; Align 3397 174 309 ; Align 3706 278 9 ; Align 4172 281 114 ; Align 4316 319 126 ; Align 4445 361 3 ; Align 6418 362 15 ; Align 6436 367 33 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr93PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 322 Query range: 130 -> 312 Target range: 32380 -> 33639 131 : ArgLeuLeuValLysAsnIleGlyLysAsnGluSerAspArgIleLeuProPheAsnMet : 150 ......:::::: |||:!!||||||||||||||||||||| !! ! !!:!:!!||| AsnPheIleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMet 32381 : aattttattttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATG : 32438 151 : TrpValAsnLeuLeuLeuAsnIleThrSerTyrPheGluIleThrTyrThrLeuGlnUnk : 170 |||:!!:!!|||! !|||::!:!!||| |||:::||||||||||||! !:!!||| TrpLeuAspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnVal 32439 : TGGCTCGATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTA : 32498 171 : PheSerLeuSerLeuTyrHis{I} >>>> Target Intron 1 >>>> {le}Gly : 179 !!. !!:!!! !! ! !..{|} 301 bp {||}||| LeuProIlePheSerArgGln{I}-+ ++{le}Gly 32499 : TTACCAATTTTCTCAAGGCaa{a}ct.........................ag{TT}GGA : 32826 180 : ValSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGln : 199 |||!!!|||.!!||||||||||||...... |||||| !|||||||||||||||||| ValCysTyrLeuCysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGln 32827 : GTGTGTTACCTTTGCTttgataacatttttttcattatgtgTCTACACGTGGCTGGTCAG : 32886 200 : PheGlnValLeuGlnTyrArgIleSerAsnIle<-><->IleTyrUnkArgPheAsnGlu : 217 |||!:::!!|||||||||||||||:!!|||:!: :!! ! ! ! ! !!.... PheArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSer 32887 : TTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAGAGC : 32946 218 : LysLysGluLysLeuIleValAspSerUnkAlaThrLysCysTyrAlaIlePheLysLys : 237 !!. ! .!.! ! !! !.!!!:! ! :!! !||||||||| !! ||||||!!. AsnAspAsnThrSerThrAlaGluLeuTyrSerGluLysCysTyrIleLysPheLysAsn 32947 : AATGATAATACAAGCACGGCTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAAT : 33006 238 : UnkGlnHisGlnAlaLeuIleTyrLeuIleTyrCysArgLysLeuGluGluValPheAsn : 257 !!.||| !! ! ! ::: :::|||... |||||||||||||||!.. CysIleGlnGlnHisGlnAlaLeuIleGluPheCysGluIleLeuGluGluValPheThr 33007 : TGCATTCAACAACATCAGGCACTaattgaattttgtgaaatactCGAAGAGGTATTCACG : 33066 258 : LeuIleValLeuGluGlnValLeuMetPheSerLeuLeuIleCysLeuAspGlyTyrGln : 277 :!!|||||||||! !||||||||||||||||||:!!:!!||||||!!!! !||||||:!! ValIleValLeuGlyGlnValLeuMetPheSerIleIleIleCysPheAlaGlyTyrGlu 33067 : GTAATCGTACTCGGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAA : 33126 278 : IleLeuMet >>>> Target Intron 2 >>>> AlaAspGlyAspValLysThrA : 288 :!!|||:!! 406 bp ! ! !!:!!:!!| ValLeuLeu++ ++IleThrLeuProPheGluSerA 33127 : GTACTCCTGgt.........................agATAACGTTACCATTTGAATCGC : 33565 289 : rgLeuIlePheSerPheHisIleLeuGlyPheLeuCysGlnLeuLeuMetPheSerTyrS : 308 ||:!! !|||!!!! ! !:!::!! ! !:!! !!||||||! !||||||!!!|||| rgValAlaPheThrCysPheLeuIleThrGlyValSerGlnLeuTrpMetPheThrTyrS 33566 : GCGTTGCTTTCACGTGCTTCTTGATTACGGGCGTGAGTCAACTATGGATGTTCACGTACA : 33625 309 : erCysAspCysIle : 312 |||||:!!|||||| erCysAsnCysIle 33626 : GTTGCAATTGCATA : 33639 vulgar: AmOr93PSE 130 312 . KQ414828.1 32380 33639 + 322 M 47 141 S 0 1 5 0 2 I 0 297 3 0 2 S 1 2 M 32 96 G 0 6 M 70 210 5 0 2 I 0 402 3 0 2 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32381 33639 322 + . gene_id 3 ; sequence AmOr93PSE ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32381 32522 . + . KQ414828.1 exonerate:protein2genome:local exon 32381 32522 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32523 32524 . + . intron_id 1 ; splice_site "ct" KQ414828.1 exonerate:protein2genome:local intron 32523 32823 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32822 32823 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32824 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32824 33137 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33639 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33639 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32381 33639 322 + . alignment_id 3 ; Query AmOr93PSE ; Align 32381 131 141 ; Align 32826 179 96 ; Align 32928 211 210 ; Align 33544 281 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr93PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 282 Query range: 135 -> 280 Target range: 37459 -> 38201 136 : AsnIleGlyLysAsnGluSerAspArgIleLeuProPheAsnMetTrpValAsnLeuLeu : 155 |||:!!||||||||||||||||||||| !! ! !!:!:!!||||||:!!:!!|||! ! AsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuPro 37460 : AATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCA : 37517 156 : LeuAsnIleThrSerTyrPheGluIleThrTyrThrLeuGlnUnkPhe >>>> Targe : 172 |||::!|||||| |||:::||||||||||||! !:!!||| !!. LeuSerIleThrProTyrTyrGluIleThrTyrIleIleGlnValLeu-- 37518 : TTATCCATAACAccatattatgaaattacttACATAATACAGGTATTAcc.......... : 37570 173 : t Intron 1 >>>> SerLeuSerLeuTyrHisIleGlyValSerTyrPheCysPheA : 186 301 bp :!!||||||:!!|||!!.:!!.!!!.!!!!|||.!!||||||| ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheA 37571 : ...............agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttg : 37911 187 : spAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGlnPheGlnValLeuGlnTyrA : 206 || ...... |||::: |||||||||||||||||||||!:::!!|||||||||| spIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrA 37912 : atatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACA : 37971 207 : rgIleSerAsnIleIle<->TyrUnkArgPheAsnGluLysLysGluLysLeuIleValA : 225 |||||:!!|||:!: ! .....!.!. :!!!..!..|||!!.! !! !..!| rgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSerThrA 37972 : GAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAG : 38031 226 : spSer<->UnkAlaThrLysCysTyrAlaIlePheLysLysUnkGlnHisGlnAlaLeuI : 244 ||..! :!! !||||||||| !! ||||||!!. !!.||| !! ! spGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnA 38032 : ATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGG : 38091 245 : leTyrLeuIleTyrCysArgLysLeuGluGluValPheAsnLeuIleValLeuGluGlnV : 264 ! :!! !!:!||| !! !|||||||||||||||!..:!!|||!.!|||! !|||| laLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnV 38092 : CACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAG : 38151 265 : alLeuMetPheSerLeuLeuIleCysLeuAspGlyTyrGlnIleLeuMet : 280 ||||||||||||||:!!|||||||||!!!! !! !|||||| !|||:!! alLeuMetPheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeu 38152 : TCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTG : 38201 vulgar: AmOr93PSE 135 280 . KQ414828.1 37459 38201 + 282 M 36 108 5 0 2 I 0 297 3 0 2 M 40 120 G 0 3 M 15 45 G 0 3 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37460 38201 282 + . gene_id 4 ; sequence AmOr93PSE ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37460 37567 . + . KQ414828.1 exonerate:protein2genome:local exon 37460 37567 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37568 37569 . + . intron_id 1 ; splice_site "CC" KQ414828.1 exonerate:protein2genome:local intron 37568 37868 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 38201 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 38201 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37460 38201 282 + . alignment_id 4 ; Query AmOr93PSE ; Align 37460 136 108 ; Align 37869 172 120 ; Align 37992 212 45 ; Align 38040 227 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr93PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 237 Query range: 171 -> 312 Target range: 22725 -> 23646 172 : SerLeuSerLeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIle : 191 :!!||||||:!!|||!!.:!!.!!!.!!!!|||.!!||||||||| ...... ||| AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIlePhePheIle 22726 : GCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatttttttcatt : 22783 192 : MetAsnLeuHisValAlaGlyGlnPheGlnValLeuGlnTyrArgIleSerAsnIleIle : 211 ::: |||||||||||||||||||||!:::!!|||||||||||||||:!!|||:!: ! LeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnValSer 22784 : ttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTGTCA : 22843 212 : <->TyrUnkArgPheAsnGluLysLysGluLysLeuIleValAspSer<->UnkAlaThr : 229 .....!.!. :!!!..!..|||!!.! !! !..!|||..! :!! ! GlyLeuSerGluIleValLysSerSerGluAsnProSerThrAspGluLeuTyrSerGlu 22844 : GGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAATTATACTCAGAG : 22903 230 : LysCysTyrAlaIlePheLysLysUnkGlnHisGlnAlaLeuIleTyrLeuIleTyrCys : 249 ||||||||| !! ||||||!!. !!.||| !! ! ! :!! !!:!||| LysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCys 22904 : AAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAATTTTGT : 22963 250 : ArgLysLeuGluGluValPheAsnLeuIleValLeuGluGlnValLeuMetPheSerLeu : 269 !! !|||||||||||||||!..:!!|||||||||! !||||||||||||! !|||:!! AlaThrLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMetSerSerIle 22964 : GCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCTAATGTCTAGCATA : 23023 270 : LeuIleCysLeuAspGlyTyrGlnIleLeuMetAlaAspGlyAspValLys{T} >>>> : 287 |||||||||!!! !|||||||||:!!|||:!!!.!..! !!!: ! ! {|} LeuIleCysPheIleGlyTyrGlnValLeuLeuValSerIleGluSerTyr{T}-+ 23024 : TTAATTTGCTTCATCGGGTATCAAGTACTCCTGGTGAGTATCGAAAGCTAT{A}at.... : 23080 288 : Target Intron 1 >>>> {hr}ArgLeuIlePheSerPheHisIleLeuGlyPhe : 298 492 bp {||}|||:!! !|||:!!! ! !:!::!! ! ! +-{hr}ArgValAlaPheAlaCysPheLeuMetMetGly 23081 : .....................at{CG}CGCGTTGCTTTCGCGTGCTTCTTGATGATGGGC : 23602 299 : LeuCysGlnLeuLeuMetPheSerTyrSerCysAspCysIle : 312 :!! !!||||||! !||||||!!!|||||||||||||||||| MetSerGlnLeuTrpMetPheThrTyrSerCysAspCysIle 23603 : ATGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCATA : 23646 vulgar: AmOr93PSE 171 312 . KQ414828.1 22725 23646 + 237 M 40 120 G 0 3 M 15 45 G 0 3 M 60 180 S 0 1 5 0 2 I 0 488 3 0 2 S 1 2 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22726 23646 237 + . gene_id 5 ; sequence AmOr93PSE ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22726 23077 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 23077 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23078 23079 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 23078 23569 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 23568 23569 . + . intron_id 0 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local cds 23570 23646 . + . KQ414828.1 exonerate:protein2genome:local exon 23570 23646 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22726 23646 237 + . alignment_id 5 ; Query AmOr93PSE ; Align 22726 172 120 ; Align 22849 212 45 ; Align 22897 227 180 ; Align 23572 288 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr93PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 236 Query range: 173 -> 280 Target range: 10837 -> 11164 174 : SerLeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIleMetAsn : 193 .!!|||||| !! !|||:!!!!!||||||||||||||||||.!!!!!|||||||||!:! GlyLeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSer 10838 : GGACTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGC : 10895 194 : LeuHisValAlaGlyGlnPheGlnValLeuGlnTyrArgIleSerAsnIle<-><->Ile : 211 :!!|||:!!::!|||||||||!:::!!||||||||||||:!:!!!!!.:!: :!! ValHisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspVal 10896 : GTGCATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTA : 10955 212 : TyrUnkArgPheAsnGluLysLysGluLysLeuIleValAspSerUnkAlaThrLysCys : 231 ! !:!.!.!::||||||... ::: !:!!:!!!!:..! .!! !!:!! ! GlnTyrGlnIleSerGluLysAsnMetGluSerValLeuGluAspCysThrArgArgSer 10956 : CAATATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGTAGATCT : 11015 232 : TyrAlaIlePheLysLysUnkGlnHisGlnAlaLeuIleTyrLeuIleTyrCysArgLys : 251 |||! !! !||||||!.. !..||| !! !! ! :!! !|||! !..!||| TyrGluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLys 11016 : TACGAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAG : 11075 252 : LeuGluGluValPheAsnLeuIleValLeuGluGlnValLeuMetPheSerLeuLeuIle : 271 ||||||.!.|||!:!!.. !|||:!!|||! !|||||||||:!!||||||:!!|||||| LeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIle 11076 : CTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATT : 11135 272 : CysLeuAspGlyTyrGlnIleLeuMet : 280 |||||| !|||||||||||||||:!! CysLeuPheGlyTyrGlnIleLeuLeu 11136 : TGCCTCTTTGGTTATCAGATATTATTG : 11164 vulgar: AmOr93PSE 173 280 . KQ414828.1 10837 11164 + 236 M 37 111 G 0 6 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10838 11164 236 + . gene_id 6 ; sequence AmOr93PSE ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 10838 11164 . + . KQ414828.1 exonerate:protein2genome:local exon 10838 11164 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10838 11164 236 + . alignment_id 6 ; Query AmOr93PSE ; Align 10838 174 111 ; Align 10955 211 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr93PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 130 -> 169 Target range: 27333 -> 27450 131 : ArgLeuLeuValLysAsnIleGlyLysAsnGluSerAspArgIleLeuProPheAsnMet : 150 ......:::::: |||:!!||||||||||||||||||||| !! ! !|||:!!||| AsnPheIleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMet 27334 : aattttattttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATG : 27391 151 : TrpValAsnLeuLeuLeuAsnIleThrSerTyrPheGluIleThrTyrThrLeuGln : 169 ||| !!:!!|||! !|||::!:!!||| |||:::||||||||||||! !:!!||| TrpPheAspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGln 27392 : TGGTTCGATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAG : 27450 vulgar: AmOr93PSE 130 169 . KQ414828.1 27333 27450 + 111 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27334 27450 111 + . gene_id 7 ; sequence AmOr93PSE ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27334 27450 . + . KQ414828.1 exonerate:protein2genome:local exon 27334 27450 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27334 27450 111 + . alignment_id 7 ; Query AmOr93PSE ; Align 27334 131 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr93PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 130 -> 169 Target range: 22301 -> 22418 131 : ArgLeuLeuValLysAsnIleGlyLysAsnGluSerAspArgIleLeuProPheAsnMet : 150 ......:::::: |||:!!||||||||||||||||||||| !! ! !!:!:!!||| AsnPheIleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMet 22302 : aattttattttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATG : 22359 151 : TrpValAsnLeuLeuLeuAsnIleThrSerTyrPheGluIleThrTyrThrLeuGln : 169 |||:!!:!!|||! !|||::!:!!||| |||:::||||||||||||! !:!!||| TrpLeuAspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGln 22360 : TGGCTCGATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAG : 22418 vulgar: AmOr93PSE 130 169 . KQ414828.1 22301 22418 + 110 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22302 22418 110 + . gene_id 8 ; sequence AmOr93PSE ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 22302 22418 . + . KQ414828.1 exonerate:protein2genome:local exon 22302 22418 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22302 22418 110 + . alignment_id 8 ; Query AmOr93PSE ; Align 22302 131 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr93PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 320 -> 369 Target range: 12619 -> 12766 321 : LeuSerMetThrSerSerArgArgMetIleArgLysAspLeuIleLeuValIleMetArg : 340 :!! !!|||!.!!.!!!! !!!:!! !:!!||| ! |||||||||:!!|||||| !||| MetProMetAsnLysThrGlyLysLysLeuArgHisAspLeuIleMetValIleGlyArg 12620 : ATGCCAATGAACAAAACTGGCAAAAAGCTACGGCATGATTTGATAATGGTCATTGGGAGG : 12677 341 : SerAsnValProCysTyrLeuThrGlyArgGlyPhePheIleValSerLeuGluMetTyr : 360 |||!.. ! !|||! !||||||!.!!.!||||||||| !||||||||||||! ||| SerArgArgValCysCysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyr 12678 : TCTAGACGAGTTTGTTGTCTGACTGCGAATGGATTTTTCCCTGTGTCCTTAGAAACTTAT : 12737 361 : UnkValLeuSerThrAlaAlaUnkPhe : 369 .....!:!!|||:!! !..! ||| ThrThrValSerSerLeuCysAsnPhe 12738 : ACTACGGTGAGTTCACTATGCaacttt : 12766 vulgar: AmOr93PSE 320 369 . KQ414828.1 12619 12766 + 101 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 12620 12766 101 + . gene_id 9 ; sequence AmOr93PSE ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 12620 12766 . + . KQ414828.1 exonerate:protein2genome:local exon 12620 12766 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 12620 12766 101 + . alignment_id 9 ; Query AmOr93PSE ; Align 12620 321 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr120 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 173 -> 302 Target range: 32467 -> 33152 174 : ProPheTyrGluIleAlaTyrIleSerGln >>>> Target Intron 1 >>>> I : 184 |||:::|||||||||...||||||! !||| 307 bp ProTyrTyrGluIleThrTyrIleIleGln++ ++A 32468 : ccatattatgaaattacttACATAATACAGgt.........................agG : 32805 185 : leLeuAlaThrSerIleCysCysLeuMetMetLeuAlaIleAspSerLeuIleAlaThrA : 204 !|||:!!..!! ! ! ! ! :!! |||..!...|||::::::... laLeuSerValTyrGlnValGlyValCysTyrLeuCysPheAspAsnIlePhePheIleM 32806 : CTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCTttgataacatttttttcatta : 32865 205 : laLeuLeuHisThrCysGlyHisPheThrValLeuLysGluAsnLeuLysAsnLeuAspT : 224 !||||||..!..!|||!!.||| !:!!|||:!! ! !..:!! |||:!! : etCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnVal---S 32866 : tgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTG---T : 32922 225 : hrTyrIleTyrAspLeuThrLysThrAsnLeuLysThrAsnSerLysTyrIleAsnLysA : 244 !! !:!! !!!::!!..!|||!:!||| !!!.|||!:!!!! ! :!! !!..!. erGlyLeuSerGluIleValLysSerAsnAspAsnThrSerThrAlaGluLeuTyrSerG 32923 : CAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACAAGCACGGCTGAATTATACTCAG : 32982 245 : snLeuTyrGluIleLysThrGlnIleIleTyrIleIleLysHisHisGlnLeuValLeuT : 264 !. !! ! ! |||||| !:!! !! !|||:!!!!.|||||| !:!:::: luLysCysTyrIleLysPheLys------AsnCysIleGlnGlnHisGlnAlaLeuIleG 32983 : AGAAATGTTACATCAAGTTTAAG------AATTGCATTCAACAACATCAGGCACTaattg : 33036 265 : rpPheCysAspAsnMetGluLysAsnPheHisLeuIleLeuPheLeuGlnAlaIleThrS : 284 ||||||::: :::|||:!! ||| :!!|||:!!.!! !|||!.!:!!! !! luPheCysGluIleLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMetP 33037 : aattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTAATGT : 33096 285 : erSerLeuIleIleCysPheValGlyPheGlnIleSerIleAlaLeuThrGluArg : 302 !|||:!!||||||||||||!.!|||!:!:!!:!! !:!:!.! !! !|||||| heSerIleIleIleCysPheAlaGlyTyrGluValLeuLeuValSerIleGluArg 33097 : TTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGGTGAGTATCGAACgc : 33152 vulgar: AmOr120 173 302 . KQ414828.1 32467 33152 + 135 M 10 30 5 0 2 I 0 303 3 0 2 M 39 117 G 1 0 M 28 84 G 2 0 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32468 33152 135 + . gene_id 1 ; sequence AmOr120 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32468 32497 . + . KQ414828.1 exonerate:protein2genome:local exon 32468 32497 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32498 32499 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32498 32804 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32803 32804 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32805 33152 . + . KQ414828.1 exonerate:protein2genome:local exon 32805 33152 . + . insertions 0 ; deletions 3 KQ414828.1 exonerate:protein2genome:local similarity 32468 33152 135 + . alignment_id 1 ; Query AmOr120 ; Align 32468 174 30 ; Align 32805 184 117 ; Align 32922 224 84 ; Align 33006 254 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr120 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 173 -> 301 Target range: 22388 -> 23070 174 : ProPheTyrGluIleAlaTyrIleSerGln >>>> Target Intron 1 >>>> I : 184 |||:::|||||||||...||||||! !||| 307 bp ProTyrTyrGluIleThrTyrIleIleGln++ ++A 22389 : ccatattatgaaattacttACATAATACAGgt.........................agG : 22726 185 : leLeuAlaThrSerIleCysCysLeuMetMetLeuAlaIleAspSerLeuIleAlaThrA : 204 !|||:!!..!! ! ! ! !! ! |||..!...||| :::... laLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIlePhePheIleL 22727 : CTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatttttttcattt : 22786 205 : laLeuLeuHisThrCysGlyHisPheThrValLeuLysGluAsnLeuLysAsnLeuAspT : 224 ||||||..!..!|||!!.||| !:!!|||:!! ! !..:!! |||:!! : euCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnVal---S 22787 : tgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTG---T : 22843 225 : hrTyrIleTyrAspLeuThrLysThrAsnLeuLysThrAsnSerLysTyrIleAsnLysA : 244 !! !:!! !!!::!!..!|||!:!!:! !!!. !!!:!!!! ! ! :!! !!..!. erGlyLeuSerGluIleValLysSerSerGluAsnProSerThrAspGluLeuTyrSerG 22844 : CAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAATTATACTCAG : 22903 245 : snLeuTyrGluIleLysThrGlnIleIleTyrIleIleLysHisHisGlnLeuValLeuT : 264 !. !! ! ! |||||| !:!! !! !|||:!!!!.|||||| !:!!:!! luLysCysTyrIleLysPheLys------AsnCysIleGlnGlnHisGlnAlaLeuIleG 22904 : AGAAATGTTACATCAAGTTTAAG------AATTGCATTCAACAGCATCAGGCACTAATTG : 22957 265 : rpPheCysAspAsnMetGluLysAsnPheHisLeuIleLeuPheLeuGlnAlaIleThrS : 284 ||||||! !..:!:|||:!! ||| :!!|||:!!.!! !|||!.!:!!! !| luPheCysAlaThrLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMetS 22958 : AATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCTAATGT : 23017 285 : erSerLeuIleIleCysPheValGlyPheGlnIleSerIleAlaLeuThrGlu : 301 |||||:!!:!!|||||||||:!!|||!:!|||:!! !:!:!.! !! !||| erSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeuValSerIleGlu 23018 : CTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGGTGAGTATCGAA : 23070 vulgar: AmOr120 173 301 . KQ414828.1 22388 23070 + 126 M 10 30 5 0 2 I 0 303 3 0 2 M 39 117 G 1 0 M 28 84 G 2 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22389 23070 126 + . gene_id 2 ; sequence AmOr120 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22389 22418 . + . KQ414828.1 exonerate:protein2genome:local exon 22389 22418 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22419 22420 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22419 22725 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 23070 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 23070 . + . insertions 0 ; deletions 3 KQ414828.1 exonerate:protein2genome:local similarity 22389 23070 126 + . alignment_id 2 ; Query AmOr120 ; Align 22389 174 30 ; Align 22726 184 117 ; Align 22843 224 84 ; Align 22927 254 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr120 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 173 -> 294 Target range: 37531 -> 38192 174 : ProPheTyrGluIleAlaTyrIleSerGln >>>> Target Intron 1 >>>> I : 184 |||:::|||||||||...||||||! !||| 307 bp ProTyrTyrGluIleThrTyrIleIleGln++ ++A 37532 : ccatattatgaaattacttACATAATACAGgt.........................agG : 37869 185 : leLeuAlaThrSerIleCysCysLeuMetMetLeuAlaIleAspSerLeuIleAlaThrA : 204 !|||:!!..!! ! ! ! !! ! |||..!...||| :::... laLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIlePhePheIleL 37870 : CTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatttttttcattt : 37929 205 : laLeuLeuHisThrCysGlyHisPheThrValLeuLysGluAsnLeuLysAsnLeuAspT : 224 ||||||..!..!|||!!.||| !:!!|||:!! ! !..:!! |||:!! : euCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnVal---S 37930 : tgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTG---T : 37986 225 : hrTyrIleTyrAspLeuThrLysThrAsnLeuLysThrAsnSerLysTyrIleAsnLysA : 244 !! !:!! !!!::!!..!|||!:!!:! !!!. !!!:!!!! ! ! :!! !!..!. erGlyLeuSerGluIleValLysSerSerGluAsnProSerThrAspGluLeuTyrSerG 37987 : CAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAATTATACTCAG : 38046 245 : snLeuTyrGluIleLysThrGlnIleIleTyrIleIleLysHisHisGlnLeuValLeuT : 264 !. !! ! ! |||||| !:!! !! !|||:!!!!.|||||| !:!!:!! luLysCysTyrIleLysPheLys------AsnCysIleGlnGlnHisGlnAlaLeuIleG 38047 : AGAAATGTTACATCAAGTTTAAG------AATTGCATTCAACAGCATCAGGCACTAATTG : 38100 265 : rpPheCysAspAsnMetGluLysAsnPheHisLeuIleLeuPheLeuGlnAlaIleThrS : 284 ||||||! !..:!:|||:!! ||| :!!||| !.!! !|||!.!:!!! !! luPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnValLeuMetP 38101 : AATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCTAATGT : 38160 285 : erSerLeuIleIleCysPheValGlyPheGln : 294 !|||:!!:!!||||||||||||! !!:!||| heSerIleLeuIleCysPheValValTyrGln 38161 : TTAGCATACTAATTTGCTTCGTCGTGTATCAA : 38192 vulgar: AmOr120 173 294 . KQ414828.1 37531 38192 + 105 M 10 30 5 0 2 I 0 303 3 0 2 M 39 117 G 1 0 M 28 84 G 2 0 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37532 38192 105 + . gene_id 3 ; sequence AmOr120 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37532 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37532 37561 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 38192 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 38192 . + . insertions 0 ; deletions 3 KQ414828.1 exonerate:protein2genome:local similarity 37532 38192 105 + . alignment_id 3 ; Query AmOr120 ; Align 37532 174 30 ; Align 37869 184 117 ; Align 37986 224 84 ; Align 38070 254 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr99 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 460 Query range: 144 -> 345 Target range: 1240085 -> 1238690 145 : ThrLeuPheSerPheLeuIleLeuPheLeuValValProLeuValSerProIleLe : 163 ..!||||||||| |||...:::|||||||||||||||::: |||:::|| ValLeuPheSerValLeuPheIlePheLeuValValProIlePheProProLeuLe 1240085 : GTTTTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcctcctcttct : 1240031 164 : uAspIleValHisProLeuAsnGlnThrArgSerArgGlnGlnLeuLeuArgValA : 182 |||||||:!! ! |||||||||:!!||||||:!!||||||::::::...:::|||| uAspIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIlePheLysValA 1240030 : ggACATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatattcaaagtta : 1239974 183 : snTyrIleValPheAspIleAspAspTyrPhePheTyrValTyrLeuGlnLeuAla : 200 |||||:!::!!.!!|||! |||!!: ! !.!. !..!|||!!!!!.|||:!! snTyrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPheHisLeuSer 1239973 : aTTACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTTCACTTGTCT : 1239920 201 : TrpGlySerIleIleValValLeuThrIleIleAlaAlaAspTrpPheTyrIleLe : 219 ||| !!!!|||! !:!!! !:!!:!!:!::!!::!:!!!!:! !.!.|||:!!|| TrpThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIleTyrValLe 1239919 : TGGACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGTCCT : 1239863 220 : uIleIleHisPheAsnSerGlyLeuPheAlaValCys{Gl} >>>> Target I : 232 |:!!|||||| !!.!||||||||||||||||||..!{||} 157 uLeuIleHisHisThrSerGlyLeuPheAlaValAla{Gl}++ 1239862 : TCTTATTCATCATACCAGCGGTCTGTTTGCTGTGGCT{Gg}gt............. : 1239820 233 : ntron 1 >>>> {y}ValGlnValLeuGluAlaThrMetAsnSerAsnLeuIle : 245 bp {|}:!!.!...!:!! ! ! !!!:.!.|||||| !:!! +-{y}IleAspThrIleTyrLys***IleGlnSerAsnAspLeu 1239819 : ............aa{A}ATAGATACTATTTACAAATAGATACAGAGTAATGATTTA : 1239628 246 : SerLysAspAlaPheSerGluAsnSerSerTyrGluLysPheArgThrCysValIl : 264 ! ! !! ! !! !|||:::... ||||||||||||::: |||||| IleValGlyLysAsnLeuGluAspGluIleTyrGluLysPheLysArgCysValAs 1239627 : ATTGTGGGAAAGAATTTAGAAgacgaaatttacgaaaaattcaaacgatgCGTCGA : 1239571 265 : eMetHisAsnGluValIle{Gl} >>>> Target Intron 2 >>>> {u}P : 272 !! |||||||||!.!|||{||} 88 bp {|}! pThrHisAsnGluAlaIle{Gl}++ ++{u}C 1239570 : CACACACAACGAAGCTATT{GA}gt.........................ag{G}T : 1239459 273 : heTyrAsnIleLeuAsnGluAsnCysGlnTyrSerTyrLeuIleGlnValGlyLeu : 290 !||||||:!!|||.!.:!!!:! !! ! !|||||||||.!!|||||||||||| ysTyrAsnValLeuGlnLysSerSerValLeuSerTyrLeuPheGlnValGlyLeu 1239458 : GTTACAATGTTCTGCAGAAAAGCAGTGTGCTCAGTTACTTGTTTCAAGTTGGATTA : 1239405 291 : AsnMetLeuGlyMetSerThrThrAlaValGln >>>> Target Intron 3 : 302 |||!!::!!|||:!:|||..!:!!||||||||| 547 bp AsnIleValGlyLeuSerValSerAlaValGln++ 1239404 : AACATAGTGGGCCTTAGTGTGTCAGCTGTTCAAgt..................... : 1239367 303 : >>>> ThrValIleAsnLeuAspArgProAspValAlaIleArgSerAlaValPh : 318 |||||| |||:!!||| !||| ||||||:!:|||!:!|||..! ! ++ThrValGlyAsnIleAspAspProThrValAlaLeuArgAsnAlaThrVa 1239366 : ....agACAGTGGGGAATATAGACGATCCGACAGTAGCTTTGAGAAACGCTACGGT : 1238774 319 : ePheGlyAlaAspGlnPheHisLeuPheLeuLeuSerLeuProGlyGlnIleLeuL : 337 !!::|||||| ! |||.!!|||||||||:!!:!!|||:!!|||||||||:!:|||: lTrpGlyAlaLysGlnIleHisLeuPheIleIleSerIleProGlyGlnValLeuI 1238773 : CTGGGGGGCTAAGCAAATTCACCTGTTCATCATCAGTATACCTGGACAGGTGCTTA : 1238717 338 : euAspHisCysAlaAspPheAlaAsn : 345 !!|||||||||!.!!!:.!.:!!||| leAspHisCysValGluLeuSerAsn 1238716 : TAGATCATTGTGTGGAGCTGTCAAAC : 1238691 vulgar: AmOr99 144 345 . KQ414851.1 1240085 1238690 - 460 M 87 261 S 0 2 5 0 2 I 0 153 3 0 2 S 1 1 M 38 114 S 0 2 5 0 2 I 0 84 3 0 2 S 1 1 M 30 90 5 0 2 I 0 543 3 0 2 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1238691 1240085 460 - . gene_id 1 ; sequence AmOr99 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1239823 1240085 . - . KQ414851.1 exonerate:protein2genome:local exon 1239823 1240085 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1239821 1239822 . - . intron_id 1 ; splice_site "gt" KQ414851.1 exonerate:protein2genome:local intron 1239666 1239822 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1239666 1239667 . - . intron_id 0 ; splice_site "AA" KQ414851.1 exonerate:protein2genome:local cds 1239549 1239665 . - . KQ414851.1 exonerate:protein2genome:local exon 1239549 1239665 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1239547 1239548 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1239461 1239548 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1239461 1239462 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1239370 1239460 . - . KQ414851.1 exonerate:protein2genome:local exon 1239370 1239460 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1239368 1239369 . - . intron_id 3 ; splice_site "gt" KQ414851.1 exonerate:protein2genome:local intron 1238823 1239369 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1238823 1238824 . - . intron_id 2 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1238691 1238822 . - . KQ414851.1 exonerate:protein2genome:local exon 1238691 1238822 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1238691 1240085 460 - . alignment_id 1 ; Query AmOr99 ; Align 1240086 145 261 ; Align 1239665 233 114 ; Align 1239460 272 90 ; Align 1238823 302 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr99 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 422 Query range: 268 -> 407 Target range: 1228933 -> 1228290 269 : ValIleGluPheTyrAsnIleLeuAsnGluAsnCysGlnTyrSerTyrLeuIleGl : 287 :!! !..!||||||:!!||||||||||||!:! !!!:! !!|||||||||:!!|| IleSerArgPheTyrAspIleLeuAsnGluSerSerArgAsnSerTyrLeuLeuGl 1228933 : ATTTCCAGGTTTTACGATATTCTAAACGAGAGCAGTCGAAACAGCTACTTGCTTCA : 1228879 288 : nValGlyLeuAsnMetLeuGlyMetSerThrThrAlaValGln >>>> Target : 302 ||||||||||!:!|||:!!.!!!!:|||..!|||||||||||| 7 nValGlyLeuSerMetMetSerIleSerValThrAlaValGln+- 1228878 : GGTTGGATTGAGCATGATGAGCATCAGCGTGACTGCTGTGCAGgc........... : 1228832 303 : Intron 1 >>>> ThrValIleAsnLeuAspArgProAspValAlaIleArgS : 315 9 bp ! !:!!:!! !||||||||||||..!! !|||||||||! ++IleMetLeuAlaLeuAspArgProSerGluAlaIleArgT 1228831 : ..............agATAATGCTCGCCCTGGATAGACCGAGCGAAGCTATTAGAT : 1228716 316 : erAlaValPhePheGlyAlaAspGlnPheHisLeuPheLeuLeuSerLeuProGly : 333 !:!!||| !!.!!|||!.!! |||||||||||||||:!!:!!|||||||||||| yrSerValValLeuGlyGlyAlaGlnPheHisLeuPheIleIleSerLeuProGly 1228715 : ATTCTGTGGTTCTTGGAGGTGCGCAATTTCATTTGTTCATCATTAGCTTACCTGGA : 1228662 334 : GlnIleLeuLeuAspHisCysAlaAspPheAlaAsnAla{Il} >>>> Target : 347 |||! !|||:!!|||||||||.!! .!..!!|||! !{||} 7 GlnThrLeuValAspHisCysThrMetLeuThrAsnAsp{Il}++ 1228661 : CAGACACTCGTGGATCATTGTACCATGCTAACGAACGAT{AT}gt........... : 1228616 348 : Intron 2 >>>> {e}TyrAspSerThrTrpTyrGlyThrSerLeuGluIleG : 360 2 bp {|}|||..!|||||||||||| !..!||| !:!!.!!| ++{e}TyrSerSerThrTrpTyrLysValSerAlaLysPheG 1228615 : ..............ag{A}TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTC : 1228509 361 : lnLysMetLeuTyrMetMetGlnIleArgSerLysLysLeuCysAlaLeuThrAla : 378 ||::!:!::!!||||||||||||||||||:!! !|||! !||| !||||||||| lnArgValIleTyrMetMetGlnIleArgAlaLeuLysProCysIleLeuThrAla 1228508 : AACGAGTAATTTACATGATGCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCA : 1228455 379 : GlyGlyLeuTyrAspMetAsnIleGluAsnPheGlyIle >>>> Target Int : 392 ||||||||||||!!:||||||!!:|||||||||!.!! ! 75 bp GlyGlyLeuTyrGluMetAsnMetGluAsnPheAlaAsn++ 1228454 : GGTGGATTGTACGAAATGAACATGGAGAACTTTGCAAACgt............... : 1228411 393 : ron 3 >>>> ThrPheLysThrCysMetSerTyrPheThrMetIleMetSerPh : 406 |||||||||||||||||||||||||||||||||:!:|||||||| ++ThrPheLysThrCysMetSerTyrPheThrMetLeuMetSerPh 1228410 : ..........agACATTCAAAACGTGCATGTCGTACTTCACAATGCTGATGTCATT : 1228296 407 : eLys : 407 |!:! eArg 1228295 : TAGG : 1228291 vulgar: AmOr99 268 407 . KQ414851.1 1228933 1228290 - 422 M 33 99 5 0 2 I 0 75 3 0 2 M 45 135 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 44 132 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228291 1228933 422 - . gene_id 2 ; sequence AmOr99 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1228835 1228933 . - . KQ414851.1 exonerate:protein2genome:local exon 1228835 1228933 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228833 1228834 . - . intron_id 1 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1228756 1228834 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1228756 1228757 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228619 1228755 . - . KQ414851.1 exonerate:protein2genome:local exon 1228619 1228755 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228617 1228618 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1228547 1228618 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1228547 1228548 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228414 1228546 . - . KQ414851.1 exonerate:protein2genome:local exon 1228414 1228546 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228412 1228413 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1228339 1228413 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1228339 1228340 . - . intron_id 2 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228291 1228338 . - . KQ414851.1 exonerate:protein2genome:local exon 1228291 1228338 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228291 1228933 422 - . alignment_id 2 ; Query AmOr99 ; Align 1228934 269 99 ; Align 1228756 302 135 ; Align 1228546 348 132 ; Align 1228339 392 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr99 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 369 Query range: 59 -> 232 Target range: 1229944 -> 1229224 60 : IleProThrThrLeuGluLeuTyrIleSerLeuArgAsnLysAspValAspGlyVa : 78 :!!! ! ! !:!!|||:!!|||:!:..!||||||!!.|||:!!:!!|||! !:! ValGlnGlnLeuIleGluMetTyrValGlnLeuArgLysLysAsnMetAspAspMe 1229944 : GTTCAACAGTTGATCGAGATGTATGTGCAATTGCGTAAGAAGAATATGGACGATAT : 1229890 79 : lIleGluCysIleProHisPheIleAlaSerSerIleSerAlaValLysLeuLeuA : 97 !!!:||| !!.!! !!:!! !||||||:!!:!!! !||| !||||||||||||| tMetGluSerPheAlaAsnThrIleAlaAlaAlaThrSerLeuValLysLeuLeuA 1229889 : GATGGAGAGTTTTGCGAATACTATTGCTGCCGCGACCAGCCTGGTGAAATTGTTGA : 1229833 98 : snLeuHisPheAsnArgGlnAsnTyrAsnIleLeuPheHisPheValThrLysLys : 115 ||:!!:!!!!.||||||:!!||| ..! !!!!||| !.!.! !!.!! ! snValTyrLeuAsnArgGluAsnValArgAlaPhePheIleIleGluAsnMetVal 1229832 : ACGTTTACTTAAACAGGGAAAATGTACGTGCCTTCTTTATTATAGAAAACATGGTT : 1229779 116 : TrpGlnGlnLeuLysSerThrTyrGluLeuAsnAlaLeuAsp >>>> Target : 130 !::... ! |||:!!..!:!!!! :!!! ! ! !||| 75 PheSerTyrLeuGlnGlnSer***LysArgValIleLeu***-+ 1229778 : TTCTCTTATTTACAACAATCGTAAAAACGTGTCATATTATagtt............ : 1229732 131 : Intron 1 >>>> GluThrIleMetGlnGlyLysLysMetAlaGlnLeuTyrAr : 143 bp |||..!! !:!!:!!|||!..|||:!!|||||||||||||| +-GluValThrLeuLysGlySerLysLeuAlaGlnLeuTyrAr 1229731 : .............aaGAGGTTACTTTGAAAGGTAGTAAATTGGCCCAATTATACAG : 1229620 144 : g{A} >>>> Target Intron 2 >>>> {sn}ThrLeuPheSerPheLeuI : 151 |{|} 126 bp {||}.!!|||.!!! ! :!! g{A}++ ++{sn}AlaLeuLeuPheAlaMetC 1229619 : A{A}gt.........................ag{AT}GCTTTACTCTTCGCAATGT : 1229470 152 : leLeuPheLeuValValProLeuValSerProIleLeuAspIleValHisProLeu : 169 !:!!||||||:!!||||||||| !!.!!||| !||||||||||||! !|||! ! ysValPheLeuLeuValProLeuPheGlyProAlaLeuAspIleValLeuProSer 1229469 : GTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCGTCCTTCCATCA : 1229416 170 : AsnGlnThrArgSerArgGlnGlnLeuLeuArgValAsnTyrIleValPheAspIl : 188 |||:!!|||||| !!||||||||||||!!!|||||||||||||||:!!|||||| AsnGluThrArgProArgGlnGlnLeuPheArgValAsnTyrIleIlePheAspGl 1229415 : AATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAATTTTCGACCA : 1229359 189 : eAspAspTyrPhePheTyrValTyrLeuGlnLeuAlaTrpGlySerIleIleValV : 207 !! |||||||||||||||||||||:!!|||||| !||| !!!!!|||:!!:!!| nAlaAspTyrPhePheTyrValTyrIleGlnLeuPheTrpCysThrIleValLeuV 1229358 : AGCAGACTATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACAATCGTTCTTG : 1229302 208 : alLeuThrIleIleAlaAlaAspTrpPheTyrIleLeuIleIleHisPheAsnSer : 225 ||:!!.!!||||||.!!!.!|||! !!.|||!!::!!||||||:!! ! !||| alMetAlaIleIleThrValAspSerLeuTyrMetIleIleIleTyrHisAlaSer 1229301 : TAATGGCCATTATCACCGTAGATTCATTGTACATGATCATAATTTACCATGCCAGC : 1229248 226 : GlyLeuPheAlaValCysGly : 232 |||:!!||||||:!!|||||| GlyMetPheAlaIleCysGly 1229247 : GGAATGTTCGCTATATGCGGG : 1229225 vulgar: AmOr99 59 232 . KQ414851.1 1229944 1229224 - 369 M 70 210 5 0 2 I 0 71 3 0 2 M 14 42 S 0 1 5 0 2 I 0 122 3 0 2 S 1 2 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229944 369 - . gene_id 3 ; sequence AmOr99 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1229735 1229944 . - . KQ414851.1 exonerate:protein2genome:local exon 1229735 1229944 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1229733 1229734 . - . intron_id 1 ; splice_site "tt" KQ414851.1 exonerate:protein2genome:local intron 1229660 1229734 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1229660 1229661 . - . intron_id 0 ; splice_site "AA" KQ414851.1 exonerate:protein2genome:local cds 1229617 1229659 . - . KQ414851.1 exonerate:protein2genome:local exon 1229617 1229659 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1229615 1229616 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1229491 1229616 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1229491 1229492 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1229225 1229490 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229490 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229944 369 - . alignment_id 3 ; Query AmOr99 ; Align 1229945 60 210 ; Align 1229660 130 42 ; Align 1229489 145 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr99 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 337 Query range: 272 -> 407 Target range: 1243170 -> 1242524 273 : TyrAsnIleLeuAsnGluAsnCysGlnTyrSerTyrLeuIleGlnValGlyLeuAs : 291 !:!:!!! !:!!||||||! ! !... !!!||||||.!!|||||||||||||| PheAspThrIleAsnGluIleThrSerThrCysTyrLeuPheGlnValGlyLeuAs 1243170 : TTCGATACCATAAACGAAATCACTAGCACATGTTACTTGTTTCAAGTCGGACTTAA : 1243116 292 : nMetLeuGlyMetSerThrThrAlaValGln >>>> Target Intron 1 >> : 302 ||||:!!|||!!:|||..!|||:!!|||! ! 77 bp nMetIleGlyIleSerValThrSerValLeu++ 1243115 : TATGATCGGTATTAGCGTGACGTCTGTTCTAgt....................... : 1243081 303 : >> ThrValIleAsnLeuAspArgProAspValAlaIleArgSerAlaValPheP : 319 .!! !!||||||||||||||||||!!:! ! ! !|||! !||| !|||. ++AlaPheIleAsnLeuAspArgProGluGluPheAlaArgIleAlaCysPheL 1243080 : ..agGCCTTTATAAATCTAGATCGGCCTGAAGAATTTGCCAGAATTGCTTGTTTCC : 1242955 320 : heGlyAlaAspGlnPheHisLeuPheLeuLeuSerLeuProGlyGlnIleLeuLeu : 337 !! !|||.!.|||.!!||||||!!.:!!:!!|||:!!||||||||||||:!! ! euIleAlaGlnGlnLeuHisLeuLeuValIleSerValProGlyGlnIleIleThr 1242954 : TTATAGCTCAGCAACTCCACTTGTTAGTCATTAGTGTACCAGGGCAGATCATCACG : 1242901 338 : AspHisCysAlaAspPheAlaAsnAla{Il} >>>> Target Intron 2 >> : 347 |||!!. !!:!! ! !!..!!! !! !{||} 72 bp AspGlnSerSerLysLeuThrIleAsp{Il}++ 1242900 : GATCAAAGTTCAAAGTTGACCATTGAC{AT}gt....................... : 1242867 348 : >> {e}TyrAspSerThrTrpTyrGlyThrSerLeuGluIleGlnLysMetLeuT : 364 {|}|||:!!|||! !|||||| !||| !!:!! !|||||||||!!:|||: ++{e}TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuH 1242866 : ..ag{A}TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTC : 1242748 365 : yrMetMetGlnIleArgSerLysLysLeuCysAlaLeuThrAlaGlyGlyLeuTyr : 382 !!!!::!:|||||||||||| |||! !||| !|||..!||||||||||||||| isIleValGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyr 1242747 : ATATAGTACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATAC : 1242694 383 : AspMetAsnIleGluAsnPheGlyIle >>>> Target Intron 3 >>>> : 392 !!:||||||||||||||||||||| ! 92 bp GluMetAsnIleGluAsnPheGlySer++ ++ 1242693 : GAAATGAACATTGAGAATTTTGGATCAgt.........................ag : 1242574 393 : ThrPheLysThrCysMetSerTyrPheThrMetIleMetSerPheLys : 407 |||||||||||||||!!:|||||||||||||||:!!:!:||||||||| ThrPheLysThrCysIleSerTyrPheThrMetLeuLeuSerPheLys 1242573 : acTTTCAAAACCTGCATATCGTACTTTACGATGCTCTTATCATTCAAA : 1242525 vulgar: AmOr99 272 407 . KQ414851.1 1243170 1242524 - 337 M 29 87 5 0 2 I 0 73 3 0 2 M 45 135 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 44 132 5 0 2 I 0 88 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242525 1243170 337 - . gene_id 4 ; sequence AmOr99 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1243084 1243170 . - . KQ414851.1 exonerate:protein2genome:local exon 1243084 1243170 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1243082 1243083 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243007 1243083 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1243007 1243008 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242870 1243006 . - . KQ414851.1 exonerate:protein2genome:local exon 1242870 1243006 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242868 1242869 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242798 1242869 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1242798 1242799 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242665 1242797 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242797 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 2 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242525 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242525 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242525 1243170 337 - . alignment_id 4 ; Query AmOr99 ; Align 1243171 273 87 ; Align 1243007 302 135 ; Align 1242797 348 132 ; Align 1242573 392 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr99 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 301 Query range: 140 -> 232 Target range: 1234335 -> 1234059 141 : LeuTyrArgAsnThrLeuPheSerPheLeuIleLeuPheLeuValValProLeuVa : 159 !!!!:! !:!!||||||.!.||||||:!!:!!:!!||||||:!!||||||||||| PhePheSerAspThrLeuLeuSerPheMetValValPheLeuLeuValProLeuVa 1234335 : TTCTTCTCAGATACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGT : 1234281 160 : lSerProIleLeuAspIleValHisProLeuAsnGlnThrArgSerArgGlnGlnL : 178 |! !|||.!!||||||:!!|||! !|||||||||:!!|||||| !!||||||||| lPheProPheLeuAspValValLeuProLeuAsnGluThrArgProArgGlnGlnG 1234280 : TTTTCCATTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAG : 1234224 179 : euLeuArgValAsnTyrIleValPheAspIleAspAspTyrPhePheTyrValTyr : 196 !!!!||||||||||||:!! !|||||| !! |||||||||||| !|||||| lyPheArgValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyr 1234223 : GATTCAGAGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTAC : 1234170 197 : LeuGlnLeuAlaTrpGlySerIleIleValValLeuThrIleIleAlaAlaAspTr : 215 !!!|||||||||||||||:!!:!!:!!||||||:!!! !||||||.!!!.!|||! PheGlnLeuAlaTrpGlyAlaValValValValMetIleIleIleThrValAspSe 1234169 : TTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTC : 1234113 216 : pPheTyrIleLeuIleIleHisPheAsnSerGlyLeuPheAlaValCysGly : 232 !!!.|||!!::!!||||||||| ! !||||||:!!||||||||||||||| rLeuTyrMetIleIleIleHisHisAlaSerGlyMetPheAlaValCysGly 1234112 : GTTGTACATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTGTGCGGG : 1234060 vulgar: AmOr99 140 232 . KQ414851.1 1234335 1234059 - 301 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234335 301 - . gene_id 5 ; sequence AmOr99 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234335 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234335 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234335 301 - . alignment_id 5 ; Query AmOr99 ; Align 1234336 141 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr99 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 256 Query range: 4 -> 109 Target range: 1235287 -> 1234629 5 : SerValPheGlnLysIleGluLysGlnHisAsnGluIleTyrAspIleProTyrTy : 23 :!!!.!||||||! !! !:!!! !|||:!!|||||||||:::...||| !:!!|| AlaAlaPheGlnThrAsnLysThrGlnAsnAsnGluIlePheGlnIleGlnHisTy 1235287 : GCAGCATTTCAGACAAACAAAACACAGAATaacgaaatattccaaatacaACATTA : 1235233 24 : rLysMetMetGluLysTyrIleArgPheLeuGlyGlnAspProArgGlnLysAspG : 42 |:!! !::::::|||:::::::::|||||||||||||||||| !|||!:!|||! rGlnProLeuGlnLysPheLeuGlnPheLeuGlyGlnAspProSerGlnArgAspG 1235232 : TCAACCGcttcagaaatttttacaatttttaggaCAAGATCCGTCACAAAGAGATG : 1235176 43 : luPheArgAsnIleIleValPheIleLeuIleIleSerIleAlaSerIleValIle : 60 ! !|||..!! !|||||||||:!!:!!:!::!!|||:!: !.!!|||:!!||| lyThrArgGlySerIleValPheValMetValLeuSerValLeuGlyIleLeuIle 1235175 : GAACCAGGGGTAGTATTGTATTTGTAATGGTGCTTAGTGTGTTAGGCATTCTTATT : 1235122 61 : ProThr >>>> Target Intron 1 >>>> ThrLeuGluLeuTyrIleSer : 69 |||||| 343 bp !:!!|||:!!|||:!!..! ProThr++ ++PheIleGluIleTyrValGln 1235121 : CCGacggt.........................agTTTATCGAGATATATGTACAA : 1234752 70 : LeuArgAsnLysAspValAspGlyValIleGluCysIleProHisPheIleAlaSe : 88 ||| !!.!.|||:!!:!!|||!.!||||||||||||:!:|||:!! !||||||:! LeuCysGluLysAsnMetAspAlaValIleGluCysLeuProAsnGlyIleAlaAl 1234751 : CTTTGTGAGAAGAATATGGACGCAGTGATCGAGTGTTTGCCGAATGGTATCGCAGC : 1234695 89 : rSerIleSerAlaValLysLeuLeuAsnLeuHisPheAsnArgGlnAsnTyrAsnI : 107 !:!!! !|||!.!|||||||||||||||:!!:!!!!.||||||:!!||| ..! aAlaThrSerValValLysLeuLeuAsnValTyrLeuAsnArgGluAsnValArgA 1234694 : CGCGACCAGCGTGGTGAAATTGTTGAACGTTTACTTAAACAGGGAAAATGTACGTG : 1234638 108 : leLeuPhe : 109 !!!!||| laPhePhe 1234637 : CCTTCTTT : 1234630 vulgar: AmOr99 4 109 . KQ414851.1 1235287 1234629 - 256 M 58 174 5 0 2 I 0 339 3 0 2 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234630 1235287 256 - . gene_id 6 ; sequence AmOr99 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1235114 1235287 . - . KQ414851.1 exonerate:protein2genome:local exon 1235114 1235287 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1235112 1235113 . - . intron_id 1 ; splice_site "gt" KQ414851.1 exonerate:protein2genome:local intron 1234771 1235113 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1234771 1234772 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1234630 1234770 . - . KQ414851.1 exonerate:protein2genome:local exon 1234630 1234770 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234630 1235287 256 - . alignment_id 6 ; Query AmOr99 ; Align 1235288 5 174 ; Align 1234771 63 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr99 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 220 Query range: 143 -> 232 Target range: 1243863 -> 1243599 144 : AsnThrLeuPheSerPheLeuIleLeuPheLeuValValProLeuValSerProIl : 162 ..!|||||||||! !|||! !|||:!!|||:!!:!! !!||||||:!! !!||||| GlyThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIl 1243863 : GGTACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAAT : 1243809 163 : eLeuAspIleValHisProLeuAsnGlnThrArgSerArgGlnGlnLeuLeuArgV : 181 |||||||:!!||| |||||||||:!!|||||||||||| !::::::::::::: eLeuAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysL 1243808 : ATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaat : 1243752 182 : alAsnTyrIleValPheAspIleAspAspTyrPhePheTyrValTyrLeuGlnLeu : 199 ::...|||:!: ||||||!::::: |||::: :::|||:!! ! ! euGlnTyrLeu---PheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThr 1243751 : tgcaataccTG---TTCGACAtggagaagaatttttattcattatacGTCTACACT : 1243701 200 : AlaTrpGlySerIleIleValValLeuThrIleIleAlaAlaAspTrpPheTyrIl : 218 !.!||| !!|||.!!!!:..!:!!:!!..!||||||.!! !||| !!!.|||:! GlyTrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrVa 1243700 : GGCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGT : 1243644 219 : eLeuIleIleHisPheAsnSerGlyLeuPheAlaValCysGly : 232 ::!!||||||||| !!..!!!||||||||||||||||||||| lValIleIleHisHisThrCysGlyLeuPheAlaValCysGly 1243643 : GGTAATCATTCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: AmOr99 143 232 . KQ414851.1 1243863 1243599 - 220 M 41 123 G 1 0 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243863 220 - . gene_id 7 ; sequence AmOr99 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243863 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243863 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243863 220 - . alignment_id 7 ; Query AmOr99 ; Align 1243864 144 123 ; Align 1243741 186 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr99 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 199 Query range: 347 -> 407 Target range: 1233381 -> 1233126 348 : TyrAspSerThrTrpTyrGlyThrSerLeuGluIleGlnLysMetLeuTyrMetMe : 366 |||..!|||||||||||| !..! !! !:!!.!!|||::!:!::!!|||! !|| TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMe 1233381 : TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGAT : 1233327 367 : tGlnIleArgSerLysLysLeuCysAlaLeuThrAlaGlyGlyLeuTyrAspMetA : 385 ||||||||||:!! !|||! !|||!.!|||||||||||||||||||||!!:|||| tGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetA 1233326 : GCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGA : 1233270 386 : snIleGluAsnPheGlyIle >>>> Target Intron 1 >>>> ThrPheL : 394 ||!!:|||||||||!.!! ! 75 bp ||||||| snMetGluAsnPheAlaAsn++ ++ThrPheL 1233269 : ACATGGAGAACTTTGCAAACgt.........................agaCATTCA : 1233168 395 : ysThrCysMetSerTyrPheThrMetIleMetSerPheLys : 407 ||||||||||||||||||||||||||:!:||||||.!!!:! ysThrCysMetSerTyrPheThrMetLeuMetSerLeuArg 1233167 : AAACGTGCATGTCATACTTCACAATGCTGATGTCACTTAGA : 1233127 vulgar: AmOr99 347 407 . KQ414851.1 1233381 1233126 - 199 M 44 132 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233127 1233381 199 - . gene_id 8 ; sequence AmOr99 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233250 1233381 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233381 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233127 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233127 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233127 1233381 199 - . alignment_id 8 ; Query AmOr99 ; Align 1233382 348 132 ; Align 1233175 392 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr99 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 188 Query range: 140 -> 232 Target range: 1224300 -> 1224024 141 : LeuTyrArgAsnThrLeuPheSerPheLeuIleLeuPheLeuValValProLeuVa : 159 :::::: ::::!!|||!::! ! !!|||:!!:!!!:!:!! ! !!||||||:! IlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLeuIl 1224300 : attttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGAT : 1224246 160 : lSerProIleLeuAspIleValHisProLeuAsnGlnThrArgSerArgGlnGlnL : 178 !!:!|||:!!||||||:!!||| |||||||||:!!|||||| !!|||::!! | eAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLeuL 1224245 : AAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTT : 1224189 179 : euLeuArgValAsnTyrIleValPheAspIleAspAspTyrPhePheTyrValTyr : 196 |||||! !|||!:!|||||| !!.!.||| !!!!::!!|||!:! !||| !! euLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValAsn 1224188 : TGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAAT : 1224135 197 : LeuGlnLeuAlaTrpGlySerIleIleValValLeuThrIleIleAlaAlaAspTr : 215 !!!!!.||| ! .!! !||| ! !! !:!!! !|||||||||!.!||| PheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAspMe 1224134 : TTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATAT : 1224078 216 : pPheTyrIleLeuIleIleHisPheAsnSerGlyLeuPheAlaValCysGly : 232 !!!.|||||| !|||||| ! ! !!!!||||||||||||||||||||| tLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaValCysGly 1224077 : GTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: AmOr99 140 232 . KQ414851.1 1224300 1224024 - 188 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224300 188 - . gene_id 9 ; sequence AmOr99 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224300 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224300 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224300 188 - . alignment_id 9 ; Query AmOr99 ; Align 1224301 141 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr99 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 153 Query range: 294 -> 348 Target range: 1233610 -> 1233448 295 : MetSerThrThrAlaValGlnThrValIleAsnLeuAspArgProAspValAlaIl : 313 :::..!!.! !:!! !!|||||||||:!!!..||||||||||||! ! !|||:! LeuAspAsnPheSerPheGlnThrValLeuThrLeuAspArgProAlaGluAlaLe 1233610 : ctcGATAACTTTTCCTTCCAGACAGTCCTCACACTGGACAGGCCGGCAGAAGCTCT : 1233556 314 : eArgSerAlaValPhePheGlyAlaAspGlnPheHisLeuPheLeuLeuSerLeuP : 332 !|||!!!|||||||||.!!! !|||!!:|||||||||||||||:!!:!!||||||| uArgCysAlaValPheLeuValAlaGluGlnPheHisLeuPheIleIleSerLeuP 1233555 : TAGATGTGCTGTGTTCCTTGTAGCGGAGCAATTTCATTTGTTCATCATTAGCTTAC : 1233499 333 : roGlyGlnIleLeuLeuAspHisCysAlaAspPheAlaAsnAlaIleTyr : 348 ||||||||! !|||:!!|||||||||.!! ! .!.:!!!!.! !!!:||| roGlyGlnThrLeuValAspHisCysThrLysLeuSerLysAspMetTyr 1233498 : CTGGACAGACACTCGTGGATCATTGTACGAAACTATCGAAGGATATGTAC : 1233449 vulgar: AmOr99 294 348 . KQ414851.1 1233610 1233448 - 153 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233449 1233610 153 - . gene_id 10 ; sequence AmOr99 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1233449 1233610 . - . KQ414851.1 exonerate:protein2genome:local exon 1233449 1233610 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233449 1233610 153 - . alignment_id 10 ; Query AmOr99 ; Align 1233611 295 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr99 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 300 -> 345 Target range: 1222717 -> 1222582 301 : GlnThrValIleAsnLeuAspArgProAspValAlaIleArgSerAlaValPhePh : 319 ||| !:!!!!:|||:!!||||||||||||! ! !|||||| !|||:!!||| ! GlnCysIleMetAsnIleAspArgProAspGluLeuIleArgLeuAlaMetPheVa 1222717 : CAGTGCATTATGAACATCGACCGACCTGACGAACTCATCAGGCTTGCGATGTTTGT : 1222663 320 : eGlyAlaAspGlnPheHisLeuPheLeuLeuSerLeuProGlyGlnIleLeuLeuA : 338 !! !|||...:::|||||||||...:!!||||||||||||||||||!!:||||||| lValAlaGlnLysPheHisLeuLeuIleLeuSerLeuProGlyGlnMetLeuLeuA 1222662 : CGTAGctcagaaatttcatttgctcATCCTTAGTTTACCTGGGCAAATGTTGTTAG : 1222606 339 : spHisCysAlaAspPheAlaAsn : 345 ||||| !! !! !!.|||:!! spHisSerLeuGlyLeuAlaAsp 1222605 : ATCATAGTTTAGGATTGGCCGAT : 1222583 vulgar: AmOr99 300 345 . KQ414851.1 1222717 1222582 - 131 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222583 1222717 131 - . gene_id 11 ; sequence AmOr99 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1222583 1222717 . - . KQ414851.1 exonerate:protein2genome:local exon 1222583 1222717 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222583 1222717 131 - . alignment_id 11 ; Query AmOr99 ; Align 1222718 301 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr99 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 347 -> 391 Target range: 1222505 -> 1222373 348 : TyrAspSerThrTrpTyrGlyThrSerLeuGluIleGlnLysMetLeuTyrMetMe : 366 |||! !|||! !||||||! ! ! !!:!!:!! ||||||:!!:!!|||! !|| TyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTyrThrMe 1222505 : TACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTACACGAT : 1222451 367 : tGlnIleArgSerLysLysLeuCysAlaLeuThrAlaGlyGlyLeuTyrAspMetA : 385 ||||!!:||||||! !::!! !||| !|||||||||||||||:!!:!!!!:|||| tGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisGluMetA 1222450 : GCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATGAGATGA : 1222394 386 : snIleGluAsnPheGlyIle : 391 ||||||||!:!||||||||| snIleGluSerPheGlyIle 1222393 : ACATCGAGAGTTTCGGAATA : 1222374 vulgar: AmOr99 347 391 . KQ414851.1 1222505 1222373 - 131 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222374 1222505 131 - . gene_id 12 ; sequence AmOr99 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1222374 1222505 . - . KQ414851.1 exonerate:protein2genome:local exon 1222374 1222505 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222374 1222505 131 - . alignment_id 12 ; Query AmOr99 ; Align 1222506 348 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr99 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 4 -> 62 Target range: 1230435 -> 1230261 5 : SerValPheGlnLysIleGluLysGlnHisAsnGluIleTyrAspIleProTyrTy : 23 |||!.!||||||! !! !:!!!::|||::: ||||||:::||||||||| !!|| SerAlaPheGlnThrAsnLysArgGlnAsnTyrGluIlePheAspIleProAspTy 1230435 : TCAGCATTTCAGACAAACAAAAGacaaaattacgaaatatttgaCATACCGGATTA : 1230381 24 : rLysMetMetGluLysTyrIleArgPheLeuGlyGlnAspProArgGlnLysAspG : 42 |:!! :::|||||| ::: !|||||||||||| !!||| !|||! !!!: rGlnProLeuGluLysLeuLeuLeuPheLeuGlyGlnHisProTyrGlnThrGluT 1230380 : CCAACcgcttgaaaaattattgctATTTTTGGGACAACATCCGTATCAAACGGAAA : 1230324 43 : luPheArgAsnIleIleValPheIleLeuIleIleSerIleAlaSerIleValIle : 60 ! !!:!!:!:!!||||||.!!:!!:!!! .!!!!!:!! !|||!!:!.!||| hrThrLysSerValIleValLeuLeuMetThrPheThrLeuLeuSerMetAlaIle 1230323 : CAACCAAGAGTGTTATTGTTCTTCTAATGACGTTCACCCTATTAAGTATGGCTATT : 1230270 61 : ProThr : 62 |||:!! ProSer 1230269 : CCATCG : 1230262 vulgar: AmOr99 4 62 . KQ414851.1 1230435 1230261 - 125 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1230262 1230435 125 - . gene_id 13 ; sequence AmOr99 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1230262 1230435 . - . KQ414851.1 exonerate:protein2genome:local exon 1230262 1230435 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1230262 1230435 125 - . alignment_id 13 ; Query AmOr99 ; Align 1230436 5 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr99 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 268 -> 301 Target range: 1233768 -> 1233669 269 : ValIleGluPheTyrAsnIleLeuAsnGluAsnCysGlnTyrSerTyrLeuIleGl : 287 :!! !..!||||||:!!||||||||||||!:! !!!:! !!|||||||||||||| IleSerArgPheTyrAspIleLeuAsnGluSerSerArgAsnSerTyrLeuIleGl 1233768 : ATTTCCAGGTTTTACGATATTCTAAACGAGAGCAGTCGAAATAGCTACTTGATTCA : 1233714 288 : nValGlyLeuAsnMetLeuGlyMetSerThrThrAlaValGln : 301 ||||||||||||||||:!!|||!!:|||..!|||||||||||| nValGlyLeuAsnMetMetGlyIleSerValThrAlaValGln 1233713 : GGTTGGATTGAACATGATGGGCATTAGCGTGACCGCTGTCCAG : 1233670 vulgar: AmOr99 268 301 . KQ414851.1 1233768 1233669 - 113 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233670 1233768 113 - . gene_id 14 ; sequence AmOr99 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1233670 1233768 . - . KQ414851.1 exonerate:protein2genome:local exon 1233670 1233768 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233670 1233768 113 - . alignment_id 14 ; Query AmOr99 ; Align 1233769 269 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr102 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 517 Query range: 226 -> 403 Target range: 1229145 -> 1228290 227 : ValCysGlyTyrGlnValGlnLysValIleSerAsnAlaLysSerPhe<->AsnGl : 244 :!!|||.!!|||||||||:!!|||!.!! !..! !!.! ! |||.!! |||.! IleCysSerTyrGlnValLysLysAlaThrGluPheValAspSerIleAspAsnSe 1229145 : ATTTGCAGCTACCAAGTGAAAAAAGCAACAGAATTTGTGGACTCAATCGACAACAG : 1229091 245 : yThrValLeuAsnAsnTyrThrTyrGluGlnIleLysAsnCysValIleMetHisA : 263 !!.!:!!! !.!.|||:!!|||:!!||||||.!!|||...||||||! !||||||| rAsnIleSerGlnAsnHisThrHisGluGlnPheLysArgCysValThrMetHisA 1229090 : TAACATTTCTCAAAATCATACACACGAACAGTTCAAACGATGCGTGACTATGCACG : 1229034 264 : spGluAlaIle{Gl} >>>> Target Intron 1 >>>> {n}PheTyrAsn : 270 ||:!!||||||{:!} 95 bp {!}||||||:!! spLysAlaIle{Ly}++ ++{s}PheTyrAsp 1229033 : ATAAAGCTATC{AA}gt.........................ag{G}TTTTACGAT : 1228918 271 : IleLeuAsnGluSerAsnArgAsnSerTyrLeuIleGlnValGlyLeuAsnMetLe : 289 |||||||||||||||!:!|||||||||||||||:!!||||||||||||!:!|||:! IleLeuAsnGluSerSerArgAsnSerTyrLeuLeuGlnValGlyLeuSerMetMe 1228917 : ATTCTAAACGAGAGCAGTCGAAACAGCTACTTGCTTCAGGTTGGATTGAGCATGAT : 1228861 290 : uAlaIleSerAlaThrAlaValGln >>>> Target Intron 2 >>>> Al : 298 !::!||||||!.!|||||||||||| 79 bp tSerIleSerValThrAlaValGln+- ++Il 1228860 : GAGCATCAGCGTGACTGCTGTGCAGgc.........................agAT : 1228755 299 : aValValAsnLeuAspArgProGluGluAlaIleArgSerAlaValPheCysGlyA : 317 !:!!:!! !||||||||||||...||||||||||||! !:!!||| !! !|||! eMetLeuAlaLeuAspArgProSerGluAlaIleArgTyrSerValValLeuGlyG 1228754 : AATGCTCGCCCTGGATAGACCGAGCGAAGCTATTAGATATTCTGTGGTTCTTGGAG : 1228698 318 : laAsnGlnPheHisLeuPheValLeuSerLeuProGlyGlnValLeuLeuAspHis : 335 .! |||||||||||||||:!!:!!|||||||||||||||..!|||:!!|||||| lyAlaGlnPheHisLeuPheIleIleSerLeuProGlyGlnThrLeuValAspHis 1228697 : GTGCGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACACTCGTGGATCAT : 1228644 336 : CysSerGluPheSerAsnAsn{Il} >>>> Target Intron 3 >>>> {e : 343 |||!!! !.!.!!!|||:!!{||} 72 bp {| CysThrMetLeuThrAsnAsp{Il}++ ++{e 1228643 : TGTACCATGCTAACGAACGAT{AT}gt.........................ag{A : 1228546 344 : }TyrSerCysIleTrpTyrArgAlaProValArgIleGlnLysValLeuTyrIleM : 362 }||||||! !! ||||||!:!!.! !!!.!!:!.!!|||::!|||:!!|||!!:| }TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetM 1228545 : }TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGA : 1228491 363 : etGlnIleArgSerLysLysLeuCysThrLeuSerAlaGlyGlyLeuTyrGluMet : 380 |||||||||||:!! !|||! !|||! !|||!!!||||||||||||||||||||| etGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMet 1228490 : TGCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATG : 1228437 381 : AsnIleGluAsnPheGlyIle >>>> Target Intron 4 >>>> ThrPhe : 389 |||!!:|||||||||!.!! ! 75 bp |||||| AsnMetGluAsnPheAlaAsn++ ++ThrPhe 1228436 : AACATGGAGAACTTTGCAAACgt.........................agACATTC : 1228335 390 : LysThrCysMetSerTyrPheThrMetIleMetSerLeuLys : 403 |||||||||||||||||||||||||||:!:||||||!!!!:! LysThrCysMetSerTyrPheThrMetLeuMetSerPheArg 1228334 : AAAACGTGCATGTCGTACTTCACAATGCTGATGTCATTTAGG : 1228291 vulgar: AmOr102 226 403 . KQ414851.1 1229145 1228290 - 517 M 16 48 G 0 3 M 24 72 S 0 2 5 0 2 I 0 91 3 0 2 S 1 1 M 30 90 5 0 2 I 0 75 3 0 2 M 45 135 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 44 132 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228291 1229145 517 - . gene_id 1 ; sequence AmOr102 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1229021 1229145 . - . KQ414851.1 exonerate:protein2genome:local exon 1229021 1229145 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1229019 1229020 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1228926 1229020 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1228926 1228927 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228835 1228925 . - . KQ414851.1 exonerate:protein2genome:local exon 1228835 1228925 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228833 1228834 . - . intron_id 2 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1228756 1228834 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1228756 1228757 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228619 1228755 . - . KQ414851.1 exonerate:protein2genome:local exon 1228619 1228755 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228617 1228618 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1228547 1228618 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1228547 1228548 . - . intron_id 2 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228414 1228546 . - . KQ414851.1 exonerate:protein2genome:local exon 1228414 1228546 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228412 1228413 . - . intron_id 4 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1228339 1228413 . - . intron_id 4 KQ414851.1 exonerate:protein2genome:local splice3 1228339 1228340 . - . intron_id 3 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228291 1228338 . - . KQ414851.1 exonerate:protein2genome:local exon 1228291 1228338 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228291 1229145 517 - . alignment_id 1 ; Query AmOr102 ; Align 1229146 227 48 ; Align 1229095 243 72 ; Align 1228925 268 90 ; Align 1228756 298 135 ; Align 1228546 344 132 ; Align 1228339 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr102 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 466 Query range: 266 -> 403 Target range: 1233762 -> 1233126 267 : GlnPheTyrAsnIleLeuAsnGluSerAsnArgAsnSerTyrLeuIleGlnValGl : 285 ::!||||||:!!|||||||||||||||!:!|||||||||||||||||||||||||| ArgPheTyrAspIleLeuAsnGluSerSerArgAsnSerTyrLeuIleGlnValGl 1233762 : AGGTTTTACGATATTCTAAACGAGAGCAGTCGAAATAGCTACTTGATTCAGGTTGG : 1233708 286 : yLeuAsnMetLeuAlaIleSerAlaThrAlaValGln >>>> Target Intro : 298 ||||||||||:!!!.!||||||!.!|||||||||||| 80 bp yLeuAsnMetMetGlyIleSerValThrAlaValGln+- 1233707 : ATTGAACATGATGGGCATTAGCGTGACCGCTGTCCAGgc................. : 1233667 299 : n 1 >>>> AlaValValAsnLeuAspArgProGluGluAlaIleArgSerAlaV : 313 .!!|||:!!!..||||||||||||! !||||||:!!|||!!!|||| ++ThrValLeuThrLeuAspArgProAlaGluAlaLeuArgCysAlaV 1233666 : ........agACAGTCCTCACACTGGACAGGCCGGCAGAAGCTCTTAGATGTGCTG : 1233544 314 : alPheCysGlyAlaAsnGlnPheHisLeuPheValLeuSerLeuProGlyGlnVal : 331 ||||| !! !|||.!.|||||||||||||||:!!:!!|||||||||||||||..! alPheLeuValAlaGluGlnPheHisLeuPheIleIleSerLeuProGlyGlnThr 1233543 : TGTTCCTTGTAGCGGAGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACA : 1233490 332 : LeuLeuAspHisCysSerGluPheSerAsnAsn{Il} >>>> Target Intro : 343 |||:!!|||||||||!!!:!!.!.|||!!.:!!{||} 70 bp LeuValAspHisCysThrLysLeuSerLysAsp{Il}++ 1233489 : CTCGTGGATCATTGTACGAAACTATCGAAGGAT{AT}gt................. : 1233450 344 : n 2 >>>> {e}TyrSerCysIleTrpTyrArgAlaProValArgIleGlnLysV : 358 {|}||||||! !! ||||||!:!!.!|||!.!!:!.!!|||::!| ++{e}TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgV 1233449 : ........ag{A}TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAG : 1233339 359 : alLeuTyrIleMetGlnIleArgSerLysLysLeuCysThrLeuSerAlaGlyGly : 376 ||:!!|||! ||||||||||||:!! !|||! !|||..!|||!!!||||||||| alIleTyrThrMetGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGly 1233338 : TAATTTACACGATGCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGA : 1233285 377 : LeuTyrGluMetAsnIleGluAsnPheGlyIle >>>> Target Intron 3 : 388 |||||||||||||||!!:|||||||||!.!! ! 75 bp LeuTyrGluMetAsnMetGluAsnPheAlaAsn++ 1233284 : TTGTATGAAATGAACATGGAGAACTTTGCAAACgt..................... : 1233247 389 : >>>> ThrPheLysThrCysMetSerTyrPheThrMetIleMetSerLeuLys : 403 |||||||||||||||||||||||||||||||||:!:|||||||||!:! ++ThrPheLysThrCysMetSerTyrPheThrMetLeuMetSerLeuArg 1233246 : ....agaCATTCAAAACGTGCATGTCATACTTCACAATGCTGATGTCACTTAGA : 1233127 vulgar: AmOr102 266 403 . KQ414851.1 1233762 1233126 - 466 M 31 93 5 0 2 I 0 76 3 0 2 M 45 135 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 44 132 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233127 1233762 466 - . gene_id 2 ; sequence AmOr102 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233670 1233762 . - . KQ414851.1 exonerate:protein2genome:local exon 1233670 1233762 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233668 1233669 . - . intron_id 1 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1233590 1233669 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233590 1233591 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233453 1233589 . - . KQ414851.1 exonerate:protein2genome:local exon 1233453 1233589 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233451 1233452 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233383 1233452 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1233383 1233384 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233250 1233382 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233382 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 2 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233127 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233127 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233127 1233762 466 - . alignment_id 2 ; Query AmOr102 ; Align 1233763 267 93 ; Align 1233590 298 135 ; Align 1233382 344 132 ; Align 1233175 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr102 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 465 Query range: 3 -> 229 Target range: 1235281 -> 1234059 4 : PheGlnLysThrArgArgGlnCysProAspIlePheAspIleProTyrTyrLysMe : 22 ||||||! !!.!!:!! !||| ! :::||||||...||| !:!!|||:!! PheGlnThrAsnLysThrGlnAsnAsnGluIlePheGlnIleGlnHisTyrGlnPr 1235281 : TTTCAGACAAACAAAACACAGAATaacgaaatattccaaatacaACATTATCAACC : 1235227 23 : tValGluLysTyrPheGlnLeuLeuGlyGlnAspProArgLeuLysAsnGluPheA : 41 !::::::|||:::...|||...||||||||||||||| !! !!:!:!!! ! !| oLeuGlnLysPheLeuGlnPheLeuGlyGlnAspProSerGlnArgAspGlyThrA 1235226 : GcttcagaaatttttacaatttttaggaCAAGATCCGTCACAAAGAGATGGAACCA : 1235170 42 : rgAsnPheIleValThrValValValIleSerIleSerGlyAsnIleValProThr : 59 ||..! !|||||| !|||:!!|||:!!|||:!:! !|||! !:!!:!!|||||| rgGlySerIleValPheValMetValLeuSerValLeuGlyIleLeuIleProThr 1235169 : GGGGTAGTATTGTATTTGTAATGGTGCTTAGTGTGTTAGGCATTCTTATTCCGacg : 1235116 60 : >>>> Target Intron 1 >>>> SerIleGluLeuTyrThrSerLeuCys : 68 343 bp ! !||||||:!!|||..!..!|||||| ++ ++PheIleGluIleTyrValGlnLeuCys 1235115 : gt.........................agTTTATCGAGATATATGTACAACTTTGT : 1234746 69 : AspLysAsnMetAspAlaValIleGluGlyLeuProHisPheIleAlaAlaThrIl : 87 !!:|||||||||||||||||||||||| !!||||||:!! !|||||||||.!!! GluLysAsnMetAspAlaValIleGluCysLeuProAsnGlyIleAlaAlaAlaTh 1234745 : GAGAAGAATATGGACGCAGTGATCGAGTGTTTGCCGAATGGTATCGCAGCCGCGAC : 1234689 88 : eSerAlaValLysIleLeuAsnValTyrPheTyrArgGluAsnPheAspLysLeuP : 106 !|||!.!||||||:!:||||||||||||!!. !!||||||||| ! ! !!!| rSerValValLysLeuLeuAsnValTyrLeuAsnArgGluAsnValArgAlaPheP 1234688 : CAGCGTGGTGAAATTGTTGAACGTTTACTTAAACAGGGAAAATGTACGTGCCTTCT : 1234632 107 : heGlnPheValThrAsnGluTrpAsnLysLeuLysLeuAsnAsnGluLeuHisIle : 124 || .!.! !!.!! ! !::::! ! |||:!!! !::: ! :!!! ! !||| heIleIleGluAsnMetValPheSerTyrLeuGlnGlnSer***LysArgValIle 1234631 : TTATTATAGAAAACATGGTTTTCTCTTATTTACAACAATCGTAAAAACGTGTCATA : 1234578 125 : LeuAspLysThrIle{Il} >>>> Target Intron 2 >>>> {e}ArgGl : 132 ||| {||} 198 bp {|} !.. Leu***PheGlnLys{Il}++ -+{e}LeuSe 1234577 : TTatagtttcaaaaa{at}gt.........................cg{T}TTATC : 1234356 133 : yAsnArgThrAlaHisLeuTyrArgSerAlaLeuLeuIleAlaLeuValLeuPheL : 151 !:!!..! !:!! !:!!!:! !|||! ! !|||:!::!!!!!:!!:!! !!! rHisGluGlySerIleValPhePheSerAspThrLeuLeuSerPheMetValValP 1234355 : ACACGAAGGATCGATCGTGTTCTTCTCAGATACATTACTGTCCTTCATGGTAGTTT : 1234299 152 : euLeuIle<->ProLeuIleSerProMetLeuAspValPheLeuProLeuAsnGlu : 168 !!|||:!: ||||||:!!! !|||.!.||||||||| !!||||||||||||||| heLeuLeuValProLeuValPheProPheLeuAspValValLeuProLeuAsnGlu 1234298 : TCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGTCGTCCTTCCGTTAAATGAA : 1234245 169 : ThrArgProArgGlnGlnLeuLeuLysValAsnTyrLeuValPheAsnAspAspAs : 187 |||||||||||||||||| !!!!!:!|||||||||||| !|||:!!!!:! || ThrArgProArgGlnGlnGlyPheArgValAsnTyrLeuTyrPheAspGluAlaAs 1234244 : ACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTATATTTCGACGAAGCGGA : 1234188 188 : pTyrPhePheTyrValTyrLeuGlnLeuAlaTrpGlySerIleIleValValValT : 206 |||||||||| !||||||!!!|||||||||||||||:!!:!!:!!||||||:!!! pTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaValValValValMetI 1234187 : CTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATGA : 1234131 207 : hrSerValAlaValAspSerLeuLeuIleLeuIleIleHisHisCysSerGlyLeu : 224 !! !:!!.!!||||||||||||! !!!::!!||||||||||||..!||||||:!! leIleIleThrValAspSerLeuTyrMetIleIleIleHisHisAlaSerGlyMet 1234130 : TCATAATCACCGTAGACTCGTTGTACATGATAATAATTCACCATGCCAGCGGAATG : 1234077 225 : PheThrValCysGly : 229 |||.!!||||||||| PheAlaValCysGly 1234076 : TTCGCCGTGTGCGGG : 1234060 vulgar: AmOr102 3 229 . KQ414851.1 1235281 1234059 - 465 M 56 168 5 0 2 I 0 339 3 0 2 M 70 210 S 0 2 5 0 2 I 0 194 3 0 2 S 1 1 M 23 69 G 0 3 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1235281 465 - . gene_id 3 ; sequence AmOr102 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1235114 1235281 . - . KQ414851.1 exonerate:protein2genome:local exon 1235114 1235281 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1235112 1235113 . - . intron_id 1 ; splice_site "gt" KQ414851.1 exonerate:protein2genome:local intron 1234771 1235113 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1234771 1234772 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1234559 1234770 . - . KQ414851.1 exonerate:protein2genome:local exon 1234559 1234770 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234557 1234558 . - . intron_id 2 ; splice_site "gt" KQ414851.1 exonerate:protein2genome:local intron 1234361 1234558 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1234361 1234362 . - . intron_id 1 ; splice_site "CG" KQ414851.1 exonerate:protein2genome:local cds 1234060 1234360 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234360 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1235281 465 - . alignment_id 3 ; Query AmOr102 ; Align 1235282 4 168 ; Align 1234771 60 210 ; Align 1234360 131 69 ; Align 1234288 154 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr102 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 366 Query range: 268 -> 403 Target range: 1243170 -> 1242524 269 : TyrAsnIleLeuAsnGluSerAsnArgAsnSerTyrLeuIleGlnValGlyLeuAs : 287 !:!:!!! !:!!||||||! !!.!!!!!..!!!||||||.!!|||||||||||||| PheAspThrIleAsnGluIleThrSerThrCysTyrLeuPheGlnValGlyLeuAs 1243170 : TTCGATACCATAAACGAAATCACTAGCACATGTTACTTGTTTCAAGTCGGACTTAA : 1243116 288 : nMetLeuAlaIleSerAlaThrAlaValGln >>>> Target Intron 1 >> : 298 ||||:!!!.!||||||!.!|||:!!|||! ! 77 bp nMetIleGlyIleSerValThrSerValLeu++ 1243115 : TATGATCGGTATTAGCGTGACGTCTGTTCTAgt....................... : 1243081 299 : >> AlaValValAsnLeuAspArgProGluGluAlaIleArgSerAlaValPheC : 315 ||| !!:!!||||||||||||||||||||| ! !|||! !||| !||| ++AlaPheIleAsnLeuAspArgProGluGluPheAlaArgIleAlaCysPheL 1243080 : ..agGCCTTTATAAATCTAGATCGGCCTGAAGAATTTGCCAGAATTGCTTGTTTCC : 1242955 316 : ysGlyAlaAsnGlnPheHisLeuPheValLeuSerLeuProGlyGlnValLeuLeu : 333 ! !|||.!.|||.!!||||||!!.|||:!!|||:!!|||||||||:!!:!! ! euIleAlaGlnGlnLeuHisLeuLeuValIleSerValProGlyGlnIleIleThr 1242954 : TTATAGCTCAGCAACTCCACTTGTTAGTCATTAGTGTACCAGGGCAGATCATCACG : 1242901 334 : AspHisCysSerGluPheSerAsnAsn{Il} >>>> Target Intron 2 >> : 343 |||!!. !!|||:!!!!.!!!! !:!!{||} 72 bp AspGlnSerSerLysLeuThrIleAsp{Il}++ 1242900 : GATCAAAGTTCAAAGTTGACCATTGAC{AT}gt....................... : 1242867 344 : >> {e}TyrSerCysIleTrpTyrArgAlaProValArgIleGlnLysValLeuT : 360 {|}|||!:!! !!:||||||!:!.!!|||||| !!|||||||||:!!|||: ++{e}TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuH 1242866 : ..ag{A}TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTC : 1242748 361 : yrIleMetGlnIleArgSerLysLysLeuCysThrLeuSerAlaGlyGlyLeuTyr : 378 !!|||:!:|||||||||||| |||! !|||! !||| !||||||||||||||| isIleValGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyr 1242747 : ATATAGTACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATAC : 1242694 379 : GluMetAsnIleGluAsnPheGlyIle >>>> Target Intron 3 >>>> : 388 |||||||||||||||||||||||| ! 92 bp GluMetAsnIleGluAsnPheGlySer++ ++ 1242693 : GAAATGAACATTGAGAATTTTGGATCAgt.........................ag : 1242574 389 : ThrPheLysThrCysMetSerTyrPheThrMetIleMetSerLeuLys : 403 |||||||||||||||!!:|||||||||||||||:!!:!:|||!!!||| ThrPheLysThrCysIleSerTyrPheThrMetLeuLeuSerPheLys 1242573 : acTTTCAAAACCTGCATATCGTACTTTACGATGCTCTTATCATTCAAA : 1242525 vulgar: AmOr102 268 403 . KQ414851.1 1243170 1242524 - 366 M 29 87 5 0 2 I 0 73 3 0 2 M 45 135 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 44 132 5 0 2 I 0 88 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242525 1243170 366 - . gene_id 4 ; sequence AmOr102 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1243084 1243170 . - . KQ414851.1 exonerate:protein2genome:local exon 1243084 1243170 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1243082 1243083 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243007 1243083 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1243007 1243008 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242870 1243006 . - . KQ414851.1 exonerate:protein2genome:local exon 1242870 1243006 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242868 1242869 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242798 1242869 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1242798 1242799 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242665 1242797 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242797 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 2 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242525 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242525 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242525 1243170 366 - . alignment_id 4 ; Query AmOr102 ; Align 1243171 269 87 ; Align 1243007 298 135 ; Align 1242797 344 132 ; Align 1242573 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr102 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 345 Query range: 133 -> 335 Target range: 1224312 -> 1222600 134 : ArgThrAlaHisLeuTyrArgSerAlaLeuLeuIleAlaLeuValLeuPheLeuLe : 152 ||| :::::: ...:!!|||! !|||!.!|||:!!:!!!:!:!! ArgGlnLysLeuIlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSe 1224312 : agacaaaaattaattttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAG : 1224258 153 : uIleProLeuIleSerProMetLeuAspValPheLeuProLeuAsnGluThrArgP : 171 !.!!|||||||||!:!|||:!:||||||||| !! !||||||||||||||||||| rPheProLeuIleAsnProValLeuAspValValAlaProLeuAsnGluThrArgP 1224257 : CTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGAC : 1224201 172 : roArgGlnGlnLeuLeuLysValAsnTyrLeuValPheAsnAspAspAspTyrPhe : 189 |||||::!! |||||| !|||!:!|||:!! !!.!.:!!!!: !!!!::!!||| roArgArgLeuLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPhe 1224200 : CCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTT : 1224147 190 : PheTyrValTyrLeuGlnLeuAlaTrpGlySerIleIleValValValThrSerVa : 208 !:! !||| !!!!!!!.||| ! .!! !||| ! !! !:!!! !! !:! TyrSerValAsnPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIl 1224146 : TATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAAT : 1224090 209 : lAlaValAspSerLeuLeuIleLeuIleIleHisHisCysSerGlyLeuPheThrV : 227 !|||||||||! !|||! !||| !|||||| !||| !!!!|||||||||.!!| eAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaV 1224089 : CGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAG : 1224033 228 : alCys{Gl} >>>> Target Intron 1 >>>> {y}TyrGlnValGlnLys : 234 |||||{||} 450 bp {|} !..!||| alCys{Gl}++ +-{y}ThrPheArgSerLys 1224032 : TGTGT{GG}gt.........................aa{A}ACGTTCAGATCAAAA : 1223562 235 : ValIleSerAsnAlaLysSerPheAsnGlyThrValLeuAsnAsnTyrThrTyrGl : 253 :!! ! !||| !! !|||.!.!.. !! !||||||::!.!. !!!:! !! MetAspValAsnTrpThrSerLeuArgArgArgValLeuSerGluAsnSerMetAs 1223561 : ATGGACGTAAATTGGACATCTCTAAGACGTCGTGTGTTATCTGAGAACAGTATGGA : 1223505 254 : uGlnIleLysAsnCysValIleMetHisAspGluAlaIleGlnPheTyrAsnIleL : 272 :!!.:!:! !::: ! ...::: ... !::!!:!! !.!.|||| pHisLeuThrSerIleAsnSerPheTyrTyrTyrValSerArgTyrCysGlnIleL 1223504 : TCATCTGACATCAATTAActcattttattattacgttTCAAGATACTGCCAGATTC : 1223448 273 : euAsnGluSerAsnArgAsnSerTyrLeuIleGlnValGlyLeuAsnMetLeuAla : 290 ||.!...!|||!:!!:!:!!! !|||||||||||||||||||||!:!:!!!!! ! euGluArgSerSerGlnHisMetTyrLeuIleGlnValGlyLeuSerValPheIle 1223447 : TGGAAAGAAGTAGCCAACATATGTACCTGATTCAAGTAGGATTAAGCGTGTTCATC : 1223394 291 : IleSerAlaThrAlaValGln >>>> Target Intron 2 >>>> AlaVal : 299 ||||||!.!||||||!.! ! 656 bp ..!:!! IleSerValThrAlaAlaAla++ ++CysIle 1223393 : ATCAGCGTGACGGCTGCCGCAgt.........................agTGCATT : 1222711 300 : ValAsnLeuAspArgProGluGluAlaIleArgSerAlaValPheCysGlyAlaAs : 318 :!!|||:!!|||||||||!!:||| !|||||| !|||:!!||| !! !|||.. MetAsnIleAspArgProAspGluLeuIleArgLeuAlaMetPheValValAlaGl 1222710 : ATGAACATCGACCGACCTGACGAACTCATCAGGCTTGCGATGTTTGTCGTAGctca : 1222654 319 : nGlnPheHisLeuPheValLeuSerLeuProGlyGlnValLeuLeuAspHis : 335 .:::|||||||||...:!!||||||||||||||||||:!!|||||||||||| nLysPheHisLeuLeuIleLeuSerLeuProGlyGlnMetLeuLeuAspHis 1222653 : gaaatttcatttgctcATCCTTAGTTTACCTGGGCAAATGTTGTTAGATCAT : 1222601 vulgar: AmOr102 133 335 . KQ414851.1 1224312 1222600 - 345 M 95 285 S 0 2 5 0 2 I 0 446 3 0 2 S 1 1 M 68 204 5 0 2 I 0 652 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222601 1224312 345 - . gene_id 5 ; sequence AmOr102 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1224026 1224312 . - . KQ414851.1 exonerate:protein2genome:local exon 1224026 1224312 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1224024 1224025 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1223576 1224025 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1223576 1223577 . - . intron_id 0 ; splice_site "AA" KQ414851.1 exonerate:protein2genome:local cds 1223371 1223575 . - . KQ414851.1 exonerate:protein2genome:local exon 1223371 1223575 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1223369 1223370 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222715 1223370 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1222715 1222716 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222601 1222714 . - . KQ414851.1 exonerate:protein2genome:local exon 1222601 1222714 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222601 1224312 345 - . alignment_id 5 ; Query AmOr102 ; Align 1224313 134 285 ; Align 1223575 230 204 ; Align 1222715 298 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr102 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 298 Query range: 56 -> 229 Target range: 1229944 -> 1229224 57 : ValProThrSerIleGluLeuTyrThrSerLeuCysAspLysAsnMetAspAlaVa : 75 |||! ! !! !||||||:!!|||..!..!||| !! ! ||||||||||||! !:! ValGlnGlnLeuIleGluMetTyrValGlnLeuArgLysLysAsnMetAspAspMe 1229944 : GTTCAACAGTTGATCGAGATGTATGTGCAATTGCGTAAGAAGAATATGGACGATAT : 1229890 76 : lIleGluGlyLeuProHisPheIle{A} >>>> Target Intron 1 >>>> : 84 !!!:|||.!!!!! !!:!! !|||{!} 204 bp tMetGluSerPheAlaAsnThrIle{G}-+ + 1229889 : GATGGAGAGTTTTGCGAATACTATT{G}ct.........................a : 1229660 85 : {la}AlaThrIleSerAlaValLysIleLeuAsnValTyrPheTyrArgGluAsn : 101 { !}!.!|||:!:!.!!.! !|||:!: !.!.:!!||| !..! ! ! +{lu}ValThrLeuLysGlySerLysLeuAlaGlnLeuTyrArgSerGluTyrLeu 1229659 : g{AG}GTTACTTTGAAAGGTAGTAAATTGGCCCAATTATACAGAAGTGAGTATCTT : 1229608 102 : PheAspLysLeuPheGlnPheValThrAsnGluTrpAsnLysLeuLysLeuAsnAs : 120 ||| ! ! ! ! !!!:!!.!:!!! ! !::|||||| !:!! !:!! PheMetIleSerAsp***TyrAlaSerIleTyrTyrAsnLysGlyGlnLysHisPh 1229607 : TTCATGATTTCCGATTAGTATGCTTCTATATATTACAACAAAGGACAGAAACATTT : 1229551 121 : nGluLeuHisIleLeuAspLysThrIleIleArgGlyAsnArgThrAlaHisLeuT : 139 !:!!!!!:!! !|||... !|||:!!|||! !!:! !! !!.! !!!! eGlnPheAsnAspLeuSerPheArgIleLeuArgGluSerSerIleVal---PheS 1229550 : TCAGTTCAATGACTTATCATTTCGCATATTACGCGAAAGTTCCATCGTA---TTTT : 1229497 140 : yrArgSerAlaLeuLeuIleAlaLeuValLeuPheLeuLeuIleProLeuIleSer : 157 ! !..!|||||||||.!!|||:!! !:!!|||||||||:!!||||||.!!.!! erLeuAspAlaLeuLeuPheAlaMetCysValPheLeuLeuValProLeuPheGly 1229496 : CCTTAGATGCTTTACTCTTCGCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGT : 1229443 158 : ProMetLeuAspValPheLeuProLeuAsnGluThrArgProArgGlnGlnLeuLe : 176 ||| ||||||:!! !!||||||! !|||||||||||||||||||||||||||!! ProAlaLeuAspIleValLeuProSerAsnGluThrArgProArgGlnGlnLeuPh 1229442 : CCAGCCCTGGACATCGTCCTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTT : 1229386 177 : uLysValAsnTyrLeuValPheAsnAspAspAspTyrPhePheTyrValTyrLeuG : 195 !!:!|||||||||:!!:!!|||:!!.!.! |||||||||||||||||||||:!!| eArgValAsnTyrIleIlePheAspGlnAlaAspTyrPhePheTyrValTyrIleG 1229385 : CAGAGTTAACTATATAATTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTC : 1229329 196 : lnLeuAlaTrpGlySerIleIleValValValThrSerValAlaValAspSerLeu : 213 ||||| !||| !!!!!|||:!!:!!|||:!!.!!! !:!!.!!|||||||||||| lnLeuPheTrpCysThrIleValLeuValMetAlaIleIleThrValAspSerLeu 1229328 : AATTGTTTTGGTGTACAATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTG : 1229275 214 : LeuIleLeuIleIleHisHisCysSerGlyLeuPheThrValCysGly : 229 ! !!!::!!||||||:!!|||..!||||||:!!|||.!!:!!|||||| TyrMetIleIleIleTyrHisAlaSerGlyMetPheAlaIleCysGly 1229274 : TACATGATCATAATTTACCATGCCAGCGGAATGTTCGCTATATGCGGG : 1229225 vulgar: AmOr102 56 229 . KQ414851.1 1229944 1229224 - 298 M 27 81 S 0 1 5 0 2 I 0 200 3 0 2 S 1 2 M 52 156 G 1 0 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229944 298 - . gene_id 6 ; sequence AmOr102 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1229863 1229944 . - . KQ414851.1 exonerate:protein2genome:local exon 1229863 1229944 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1229861 1229862 . - . intron_id 1 ; splice_site "CT" KQ414851.1 exonerate:protein2genome:local intron 1229659 1229862 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1229659 1229660 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1229225 1229658 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229658 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229944 298 - . alignment_id 6 ; Query AmOr102 ; Align 1229945 57 81 ; Align 1229657 85 156 ; Align 1229501 138 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr102 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 219 Query range: 263 -> 343 Target range: 1239471 -> 1238684 264 : GluAlaIleGlnPheTyrAsnIleLeuAsnGluSerAsnArgAsnSerTyrLeuIl : 282 .!.|||.!!::!! !||||||:!!|||.!.:!!|||!:! ! !|||||||||.! HisAlaPheArgCysTyrAsnValLeuGlnLysSerSerValLeuSerTyrLeuPh 1239471 : CATGCTTTCAGGTGTTACAATGTTCTGCAGAAAAGCAGTGTGCTCAGTTACTTGTT : 1239417 283 : eGlnValGlyLeuAsnMetLeuAlaIleSerAlaThrAlaValGln >>>> Tar : 298 !|||||||||||||||!!::!!!.!:!!|||!.!:!!||||||||| eGlnValGlyLeuAsnIleValGlyLeuSerValSerAlaValGln++ 1239416 : TCAAGTTGGATTAAACATAGTGGGCCTTAGTGTGTCAGCTGTTCAAgt........ : 1239367 299 : get Intron 1 >>>> AlaValValAsnLeuAspArgProGluGluAlaIleA : 310 547 bp .!!|||! !|||:!!||| !||| !! !|||:!:| ++ThrValGlyAsnIleAspAspProThrValAlaLeuA 1239366 : .................agACAGTGGGGAATATAGACGATCCGACAGTAGCTTTGA : 1238786 311 : rgSerAlaValPheCysGlyAlaAsnGlnPheHisLeuPheValLeuSerLeuPro : 328 ||!:!|||..! !!!! ||||||!!.|||.!!|||||||||:!!:!!|||:!!||| rgAsnAlaThrValTrpGlyAlaLysGlnIleHisLeuPheIleIleSerIlePro 1238785 : GAAACGCTACGGTCTGGGGGGCTAAGCAAATTCACCTGTTCATCATCAGTATACCT : 1238732 329 : GlyGlnValLeuLeuAspHisCysSerGluPheSerAsnAsnIle : 343 ||||||||||||:!!||||||||| !|||.!.||||||:!!!!: GlyGlnValLeuIleAspHisCysValGluLeuSerAsnAspMet 1238731 : GGACAGGTGCTTATAGATCATTGTGTGGAGCTGTCAAACGACATG : 1238685 vulgar: AmOr102 263 343 . KQ414851.1 1239471 1238684 - 219 M 34 102 5 0 2 I 0 543 3 0 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1238685 1239471 219 - . gene_id 7 ; sequence AmOr102 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1239370 1239471 . - . KQ414851.1 exonerate:protein2genome:local exon 1239370 1239471 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1239368 1239369 . - . intron_id 1 ; splice_site "gt" KQ414851.1 exonerate:protein2genome:local intron 1238823 1239369 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1238823 1238824 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1238685 1238822 . - . KQ414851.1 exonerate:protein2genome:local exon 1238685 1238822 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1238685 1239471 219 - . alignment_id 7 ; Query AmOr102 ; Align 1239472 264 102 ; Align 1238823 298 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr102 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 209 Query range: 141 -> 229 Target range: 1240085 -> 1239821 142 : AlaLeuLeuIleAlaLeuValLeuPheLeuLeuIleProLeuIleSerProMetLe : 160 !.!|||!!! ...||| :::||||||:!!:!!|||:::... |||:::|| ValLeuPheSerValLeuPheIlePheLeuValValProIlePheProProLeuLe 1240085 : GTTTTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcctcctcttct : 1240031 161 : uAspValPheLeuProLeuAsnGluThrArgProArgGlnGlnLeuLeuLysValA : 179 ||||:!!!!. !|||||||||||||||||| !!||||||::::::...||||||| uAspIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIlePheLysValA 1240030 : ggACATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatattcaaagtta : 1239974 180 : snTyrLeuValPheAsnAspAspAspTyrPhePheTyrValTyrLeuGlnLeuAla : 197 ||||||||:!!.!!:!! |||!!: ! !.!. !..!|||!!!!!.|||:!! snTyrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPheHisLeuSer 1239973 : aTTACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTTCACTTGTCT : 1239920 198 : TrpGlySerIleIleValValValThrSerValAlaValAspSerLeuLeuIleLe : 216 ||| !!!!|||! !:!!! !:!!:!! !:!!::! !!!:! !:!!! !:!!|| TrpThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIleTyrValLe 1239919 : TGGACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGTCCT : 1239863 217 : uIleIleHisHisCysSerGlyLeuPheThrValCysGly : 229 |:!!||||||||| !||||||||||||.!!|||..!||| uLeuIleHisHisThrSerGlyLeuPheAlaValAlaGly 1239862 : TCTTATTCATCATACCAGCGGTCTGTTTGCTGTGGCTGgg : 1239822 vulgar: AmOr102 141 229 . KQ414851.1 1240085 1239821 - 209 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240085 209 - . gene_id 8 ; sequence AmOr102 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239822 1240085 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240085 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240085 209 - . alignment_id 8 ; Query AmOr102 ; Align 1240086 142 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr102 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 193 Query range: 147 -> 229 Target range: 1243842 -> 1243599 148 : ValLeuPheLeuLeuIleProLeuIleSerProMetLeuAspValPheLeuProLe : 166 :!!:!!|||:!!|||.!!||||||||| !!|||!!:||||||||| !!! !||||| IleIlePheValLeuPheProLeuIleProProIleLeuAspValValSerProLe 1243842 : ATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCT : 1243788 167 : uAsnGluThrArgProArgGlnGlnLeuLeuLysValAsnTyrLeuValPheAsnA : 185 ||||||||||||| !!||| !:::::::::|||:::...|||||| |||:!! uAsnGluThrArgSerArgIleGluValIleLysLeuGlnTyrLeu---PheAspM 1243787 : TAATGAGACTCGATCTCGGATAGaagtaataaaattgcaataccTG---TTCGACA : 1243734 186 : spAspAspTyrPhePheTyrValTyrLeuGlnLeuAlaTrpGlySerIleIleVal : 203 ::: |||::: :::|||:!! ! !!.!||| !!|||.!!!!:..! etGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThr 1243733 : tggagaagaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACC : 1243680 204 : ValValThrSerValAlaValAspSerLeuLeuIleLeuIleIleHisHisCysSe : 222 :!!:!!..!! !:!!.!!:!!|||:!!|||! !:!::!!|||||||||||| !! MetMetValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCy 1243679 : ATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTG : 1243623 223 : rGlyLeuPheThrValCysGly : 229 !|||||||||.!!||||||||| sGlyLeuPheAlaValCysGly 1243622 : TGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: AmOr102 147 229 . KQ414851.1 1243842 1243599 - 193 M 34 102 G 1 0 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243842 193 - . gene_id 9 ; sequence AmOr102 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243842 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243842 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243842 193 - . alignment_id 9 ; Query AmOr102 ; Align 1243843 148 102 ; Align 1243741 183 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr98 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 649 Query range: 3 -> 227 Target range: 1235281 -> 1234062 4 : PheGlnLysThrGlyLysGluTyrSerAsnIlePheAspIleProTyrTyrLysVa : 22 ||||||! !!.! !! !:!! !!:::...||||||...||| !:!!|||:!! PheGlnThrAsnLysThrGlnAsnAsnGluIlePheGlnIleGlnHisTyrGlnPr 1235281 : TTTCAGACAAACAAAACACAGAATaacgaaatattccaaatacaACATTATCAACC : 1235227 23 : lLeuLysLysTyrLeuGlnPheLeuGlyGlnAspProTyrGlnGluCysLysTyrA : 41 !|||:::|||:::||||||||||||||||||||||||! |||..! ! ! !| oLeuGlnLysPheLeuGlnPheLeuGlyGlnAspProSerGlnArgAspGlyThrA 1235226 : GcttcagaaatttttacaatttttaggaCAAGATCCGTCACAAAGAGATGGAACCA : 1235170 42 : rgAsnIleIleThrIleIleMetLeuIleSerMetIleAlaIlePheIleProThr : 59 ||..!! !|||..!.!!:!!|||:!!:!!|||:!!:!!!.!|||.!!||||||||| rgGlySerIleValPheValMetValLeuSerValLeuGlyIleLeuIleProThr 1235169 : GGGGTAGTATTGTATTTGTAATGGTGCTTAGTGTGTTAGGCATTCTTATTCCGacg : 1235116 60 : >>>> Target Intron 1 >>>> ThrPheGluIleTyrValSerIleHis : 68 343 bp !.!!||||||||||||..!:!! ! ++ ++PheIleGluIleTyrValGlnLeuCys 1235115 : gt.........................agTTTATCGAGATATATGTACAACTTTGT : 1234746 69 : AspLysAsnThrAspAlaValMetGluCysLeuProAsnLeuCysAlaSerLeuSe : 87 !!:||||||! !|||||||||!!:||||||||||||||| ! !|||:!! !!! GluLysAsnMetAspAlaValIleGluCysLeuProAsnGlyIleAlaAlaAlaTh 1234745 : GAGAAGAATATGGACGCAGTGATCGAGTGTTTGCCGAATGGTATCGCAGCCGCGAC : 1234689 88 : rSerValValLysIleLeuAsnValHisPheAsnArgGluAsn >>>> Target : 102 !||||||||||||:!:|||||||||:!!!!.|||||||||||| 7 rSerValValLysLeuLeuAsnValTyrLeuAsnArgGluAsn++ 1234688 : CAGCGTGGTGAAATTGTTGAACGTTTACTTAAACAGGGAAAATgt........... : 1234642 103 : Intron 2 >>>> PheAsnLysLeuLeuGluPheValValLysGluTrpAspG : 115 5 bp |||...|||::: :::.!!|||..!!:!||||||!!:: ++PheGlnLysMetTyrAspLeuValThrArgGluTrpGluG 1234641 : ..............agtttcaaaaaatgtatgaTCTTGTGACAAGAGAGTGGGAGC : 1234530 116 : luLeuLysLeuAsn<->GluLeuHisIleLeuGluGluIleThrIleGlnGlySer : 132 !!|||!:!:!!||| |||||||||:!:||||||!!:||||||!!:||||||.!! lnLeuArgMetAsnAspGluLeuHisValLeuGluAspIleThrMetGlnGlyGly 1234529 : AGTTGAGGATGAACGACGAGTTGCATGTGCTTGAAGACATTACCATGCAAGGTGGT : 1234476 133 : LysIleAlaHisLeuTyrArg{A} >>>> Target Intron 3 >>>> {sn : 140 |||:!!|||!!.!!!||||||{|} 126 bp {|| LysLeuAlaGlnPheTyrArg{A}++ ++{sn 1234475 : AAACTCGCGCAATTCTACAGA{A}gt.........................ag{AT : 1234325 141 : }ThrLeuLeuSerPheLeuIleLeuPheLeuLeuValProMetTyrPheProIleL : 159 }|||||||||||||||:!!:!!:!!|||||||||||||||:!: !||||||.!!| }ThrLeuLeuSerPheMetValValPheLeuLeuValProLeuValPheProPheL 1234324 : }ACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCT : 1234269 160 : euAspMetIleAspAlaLeuAsnGlnThrArgSerArgGlnGlnLeuLeuArgVal : 177 |||||:!::!! ! !!||||||:!!|||||| !!||||||||| !!!!|||||| euAspValValLeuProLeuAsnGluThrArgProArgGlnGlnGlyPheArgVal 1234268 : TGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTT : 1234215 178 : AsnTyrMetValPheAsnAlaAspAspTyrPhePheTyrValTyrLeuGlnLeuAl : 196 ||||||:!: !|||:!!! !! |||||||||||| !||||||!!!|||||||| AsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyrPheGlnLeuAl 1234214 : AACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGC : 1234158 197 : aTrpGlyAlaIleValIleValMetIleValIleThrValAspSerLeuTyrIleI : 215 ||||||||||:!!|||:!!|||||||||:!!|||||||||||||||||||||!!:| aTrpGlyAlaValValValValMetIleIleIleThrValAspSerLeuTyrMetI 1234157 : CTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGA : 1234101 216 : leIleIleHisHisValCysGlyLeuPheAlaValCys : 227 ||||||||||||||!.! !!|||:!!|||||||||||| leIleIleHisHisAlaSerGlyMetPheAlaValCys 1234100 : TAATAATTCACCATGCCAGCGGAATGTTCGCCGTGTGC : 1234063 vulgar: AmOr98 3 227 . KQ414851.1 1235281 1234062 - 649 M 56 168 5 0 2 I 0 339 3 0 2 M 42 126 5 0 2 I 0 71 3 0 2 M 18 54 G 0 3 M 20 60 S 0 1 5 0 2 I 0 122 3 0 2 S 1 2 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234063 1235281 649 - . gene_id 1 ; sequence AmOr98 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1235114 1235281 . - . KQ414851.1 exonerate:protein2genome:local exon 1235114 1235281 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1235112 1235113 . - . intron_id 1 ; splice_site "gt" KQ414851.1 exonerate:protein2genome:local intron 1234771 1235113 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1234771 1234772 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1234645 1234770 . - . KQ414851.1 exonerate:protein2genome:local exon 1234645 1234770 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234643 1234644 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1234570 1234644 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1234570 1234571 . - . intron_id 1 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1234452 1234569 . - . KQ414851.1 exonerate:protein2genome:local exon 1234452 1234569 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234450 1234451 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1234326 1234451 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1234326 1234327 . - . intron_id 2 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1234063 1234325 . - . KQ414851.1 exonerate:protein2genome:local exon 1234063 1234325 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234063 1235281 649 - . alignment_id 1 ; Query AmOr98 ; Align 1235282 4 168 ; Align 1234771 60 126 ; Align 1234570 102 54 ; Align 1234513 120 60 ; Align 1234324 141 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr98 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 436 Query range: 1 -> 227 Target range: 1246735 -> 1243602 2 : AspMetPheGlnLysThrGlyLysGluTyrSerAsnIlePheAspIleProTyrTy : 20 ...:!!|||||||||! !! !!:!.!. ! .!!::!|||||||||.!!|||||||| SerValPheGlnLysArgGluArgHisGluGlySerIlePheAspPheProTyrTy 1246735 : TCAGTGTTTCAGAAAAGGGAAAGACACGAAGGTTCTATATTTGACTTTCCTTATTA : 1246681 21 : rLysValLeuLysLysTyrLeuGlnPheLeuGlyGlnAspProTyrGlnGluCysL : 39 | ...|||... ::: !|||||||||||| !!|||||||||..! rGlySerPheLysAsnAsnMetLeuPheLeuGlyGlnTyrProTyrGlnSerLysL 1246680 : CggatcgtttaaaaataatatgctATTCTTGGGACAATATCCATATCAATCGAAAT : 1246624 40 : ysTyrArgAsnIleIleThrIleIleMetLeuIleSerMetIleAlaIlePheIle : 57 ... ... !:!:|||:!! !!!! ! ::!:!!.!.||| euThrGluIlePheAsnGluThrLeuMetValCysThrTyrThrSerLeuIleIle 1246623 : tgactgaaatatttaatgaaacCCTGATGGTATGCACCTATACGAGTCTCATAATT : 1246570 58 : ProThr >>>> Target Intron 1 >>>> ThrPheGluIleTyrValSer : 66 ! ! 111 bp ..!.!.:!!!!:!:!! !:!! LeuGln++ ++ValIleGlnMetPheGluAla 1246569 : TTACAGgt.........................agGTTATACAAATGTTCGAAGCG : 1246432 67 : IleHisAspLysAsnThrAspAlaValMetGluCysLeuProAsnLeuCysAlaSe : 85 ||| !! |||:!!! !||||||..!|||||| !:!!||| :!! !.!!.. IleIleValLysAspIleAspAlaThrMetGluThrValProValIleValThrGl 1246431 : ATAATTGTAAAGGACATCGATGCAACGATGGAAACCGTACCTGTAATAGTCACCGA : 1246375 86 : rLeuSerSerValValLysIleLeuAsnValHisPheAsnArgGluAsn >>>> : 102 !||| |||:::|||:::|||||| ! !.!!|||!:!! !!!. uLeuValCysValIleLysLeuLeuAsnHisIleIleAsnLysGlyLys++ 1246374 : ATTGgtttgtgtaataaaattgctGAATCATATCATCAATAAAGGAAAGgt..... : 1246322 103 : Target Intron 2 >>>> PheAsnLysLeuLeuGluPheValValLysGluT : 113 1270 bp |||:!!||||||! !!!:.!!:!! !||||||| ++PheAspLysLeuTyrAspIleMetLysLysGluT 1246321 : ....................agTTCGACAAGTTGTACGATATCATGAAGAAAGAAT : 1245021 114 : rpAspGluLeuLysLeuAsnGluLeuHisIleLeuGluGluIleThrIleGlnGly : 131 ||||| !|||!..|||:!!|||! !!!.||||||||||||||||||! !!:!||| rpAspMetLeuSerLeuAspGluGlnGlnIleLeuGluGluIleThrLysArgGly 1245020 : GGGATATGTTAAGTCTCGACGAGCAGCAGATTCTCGAAGAAATCACTAAACGAGGA : 1244967 132 : SerLysIleAlaHisLeuTyrArg{A} >>>> Target Intron 3 >>>> : 140 ||||||:!!.!!:!!:!!||||||{!} 1077 bp SerLysLeuThrAsnIleTyrArg{S}++ ++ 1244966 : AGTAAATTAACCAATATATACAGA{A}gt.........................ag : 1243864 141 : {sn}ThrLeuLeuSerPheLeuIleLeuPheLeuLeuValProMetTyrPheProI : 158 {:!}||||||!!!! !|||! !|||:!!|||:!!||| !!|||:!: ! |||| {er}ThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProI 1243863 : {GT}ACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAA : 1243809 159 : leLeuAspMetIleAspAlaLeuAsnGlnThrArgSerArgGlnGlnLeuLeuArg : 176 ||||||||:!::!!... !!||||||:!!|||||||||||| !:::::::::::: leLeuAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLys 1243808 : TATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaa : 1243755 177 : ValAsnTyrMetValPheAsnAlaAspAspTyrPhePheTyrValTyrLeuGlnLe : 195 :::...|||:!! |||:!! ::: |||::: :::|||:!! ! LeuGlnTyrLeu---PheAspMetGluLysAsnPheTyrSerLeuTyrValTyrTh 1243754 : ttgcaataccTG---TTCGACAtggagaagaatttttattcattatacGTCTACAC : 1243701 196 : uAlaTrpGlyAlaIleValIleValMetIleValIleThrValAspSerLeuTyrI : 214 !!.!||| !!:!!.!!:!!! !:!!|||:!!:!!||||||:!!|||:!!||||||: rGlyTrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrV 1243700 : TGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATG : 1243644 215 : leIleIleIleHisHisValCysGlyLeuPheAlaValCys : 227 !::!!||||||||||||..!||||||||||||||||||||| alValIleIleHisHisThrCysGlyLeuPheAlaValCys 1243643 : TGGTAATCATTCATCACACGTGTGGCTTATTCGCTGTTTGC : 1243603 vulgar: AmOr98 1 227 . KQ414851.1 1246735 1243602 - 436 M 58 174 5 0 2 I 0 107 3 0 2 M 42 126 5 0 2 I 0 1266 3 0 2 M 38 114 S 0 1 5 0 2 I 0 1073 3 0 2 S 1 2 M 40 120 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243603 1246735 436 - . gene_id 2 ; sequence AmOr98 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1246562 1246735 . - . KQ414851.1 exonerate:protein2genome:local exon 1246562 1246735 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1246560 1246561 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1246451 1246561 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1246451 1246452 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1246325 1246450 . - . KQ414851.1 exonerate:protein2genome:local exon 1246325 1246450 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1246323 1246324 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1245055 1246324 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1245055 1245056 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1244940 1245054 . - . KQ414851.1 exonerate:protein2genome:local exon 1244940 1245054 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1244938 1244939 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243863 1244939 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1243863 1243864 . - . intron_id 2 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1243603 1243862 . - . KQ414851.1 exonerate:protein2genome:local exon 1243603 1243862 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243603 1246735 436 - . alignment_id 2 ; Query AmOr98 ; Align 1246736 2 174 ; Align 1246451 60 126 ; Align 1245055 102 114 ; Align 1243861 141 120 ; Align 1243741 182 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr98 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 390 Query range: 263 -> 401 Target range: 1233762 -> 1233126 264 : LysPheTyrAsnIleLeuAsnAsnSerSerGlnLeuSerTyrLeuLeuGlnIleGl : 282 !:!||||||:!!|||||||||.!.||||||!:! !|||||||||:!!|||:!!|| ArgPheTyrAspIleLeuAsnGluSerSerArgAsnSerTyrLeuIleGlnValGl 1233762 : AGGTTTTACGATATTCTAAACGAGAGCAGTCGAAATAGCTACTTGATTCAGGTTGG : 1233708 283 : yIleAsnIleMetGlyIleSerThrThrAlaPheGln >>>> Target Intro : 295 |:!:|||!!:||||||||||||..!|||||| !!||| 80 bp yLeuAsnMetMetGlyIleSerValThrAlaValGln+- 1233707 : ATTGAACATGATGGGCATTAGCGTGACCGCTGTCCAGgc................. : 1233667 296 : n 1 >>>> LeuAlaValAsnLeuAspThrArgProGlnGluAlaIleArgAsnA : 310 !!.!:!!!..|||||| |||||| !||||||:!!||| !| ++ThrValLeuThrLeuAsp---ArgProAlaGluAlaLeuArgCysA 1233666 : ........agACAGTCCTCACACTGGAC---AGGCCGGCAGAAGCTCTTAGATGTG : 1233547 311 : laValPheCysGlyAlaAsnGlnPheHisLeuPheValLeuSerLeuProGlyGln : 328 |||||||| !! !|||.!.|||||||||||||||:!!:!!||||||||||||||| laValPheLeuValAlaGluGlnPheHisLeuPheIleIleSerLeuProGlyGln 1233546 : CTGTGTTCCTTGTAGCGGAGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAG : 1233493 329 : IleLeuLeuAspHisCysAlaGluLeuSerAsnThr{Il} >>>> Target In : 341 ! !|||:!!|||||||||.!!:!!||||||!!. !{||} 70 b ThrLeuValAspHisCysThrLysLeuSerLysAsp{Il}++ 1233492 : ACACTCGTGGATCATTGTACGAAACTATCGAAGGAT{AT}gt.............. : 1233450 342 : tron 2 >>>> {e}TyrCysSerMetTrpTyrLysLeuProValLysIleGlnL : 355 p {|}|||! !|||! !|||||||||:!!|||!.!|||.!!|||: ++{e}TyrSerSerThrTrpTyrLysValProAlaLysPheGlnA 1233449 : ...........ag{A}TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGC : 1233342 356 : ysMetPheAsnIleMetLeuMetArgSerLysLysSerCysAlaLeuThrValTyr : 373 :!:!:.!! !!! |||! !!!:|||:!! !||| !!|||!.!||||||!.! ! rgValIleTyrThrMetGlnIleArgAlaLeuLysProCysValLeuThrAlaGly 1233341 : GAGTAATTTACACGATGCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGT : 1233288 374 : GlyLeuTyrGluLeuAsnMetGluAsnPheGlyThr >>>> Target Intron : 386 ||||||||||||:!!|||||||||||||||!.!!.! 75 bp GlyLeuTyrGluMetAsnMetGluAsnPheAlaAsn++ 1233287 : GGATTGTATGAAATGAACATGGAGAACTTTGCAAACgt.................. : 1233247 387 : 3 >>>> ThrPheLysAlaCysIleSerTyrPheThrMetMetLeuSerLeuLy : 401 |||||||||.!!|||!!:|||||||||||||||:!!:!!||||||!: ++ThrPheLysThrCysMetSerTyrPheThrMetLeuMetSerLeuAr 1233246 : .......agaCATTCAAAACGTGCATGTCATACTTCACAATGCTGATGTCACTTAG : 1233129 402 : s : 401 ! g 1233128 : A : 1233127 vulgar: AmOr98 263 401 . KQ414851.1 1233762 1233126 - 390 M 31 93 5 0 2 I 0 76 3 0 2 M 6 18 G 1 0 M 39 117 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 44 132 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233127 1233762 390 - . gene_id 3 ; sequence AmOr98 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233670 1233762 . - . KQ414851.1 exonerate:protein2genome:local exon 1233670 1233762 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233668 1233669 . - . intron_id 1 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1233590 1233669 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233590 1233591 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233453 1233589 . - . KQ414851.1 exonerate:protein2genome:local exon 1233453 1233589 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local splice5 1233451 1233452 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233383 1233452 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1233383 1233384 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233250 1233382 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233382 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 2 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233127 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233127 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233127 1233762 390 - . alignment_id 3 ; Query AmOr98 ; Align 1233763 264 93 ; Align 1233590 295 18 ; Align 1233572 302 117 ; Align 1233382 342 132 ; Align 1233175 386 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr98 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 309 Query range: 263 -> 401 Target range: 1223463 -> 1222005 264 : LysPheTyrAsnIleLeuAsnAsnSerSerGlnLeuSerTyrLeuLeuGlnIleGl : 282 !:!!:!! !.!.||||||.!.!..|||||||||! !! !||||||:!!|||:!!|| ArgTyrCysGlnIleLeuGluArgSerSerGlnHisMetTyrLeuIleGlnValGl 1223463 : AGATACTGCCAGATTCTGGAAAGAAGTAGCCAACATATGTACCTGATTCAAGTAGG : 1223409 283 : yIleAsnIleMetGlyIleSerThrThrAlaPheGln >>>> Target Intro : 295 |:!!!:!:!:.!. !||||||..!|||||| ! ! 656 bp yLeuSerValPheIleIleSerValThrAlaAlaAla++ 1223408 : ATTAAGCGTGTTCATCATCAGCGTGACGGCTGCCGCAgt................. : 1223368 296 : n 1 >>>> LeuAlaValAsnLeuAspThrArgProGlnGluAlaIleArgAsnA : 310 ! ! !:!!|||:!!||| ||||||.!.||| !|||||| !| ++CysIleMetAsnIleAsp---ArgProAspGluLeuIleArgLeuA 1223367 : ........agTGCATTATGAACATCGAC---CGACCTGACGAACTCATCAGGCTTG : 1222672 311 : laValPheCysGlyAlaAsnGlnPheHisLeuPheValLeuSerLeuProGlyGln : 328 ||:!!||| !! !|||...:::|||||||||...:!!|||||||||||||||||| laMetPheValValAlaGlnLysPheHisLeuLeuIleLeuSerLeuProGlyGln 1222671 : CGATGTTTGTCGTAGctcagaaatttcatttgctcATCCTTAGTTTACCTGGGCAA : 1222618 329 : IleLeuLeuAspHisCysAlaGluLeuSerAsnThr{Il} >>>> Target In : 341 !!:|||||||||||| !! !! !|||:!!:!!! !{||} 71 b MetLeuLeuAspHisSerLeuGlyLeuAlaAspIle{Il}++ 1222617 : ATGTTGTTAGATCATAGTTTAGGATTGGCCGATATA{AT}gt.............. : 1222575 342 : tron 2 >>>> {e}TyrCysSerMetTrpTyrLysLeuProValLysIleGlnL : 355 p {|}|||..!|||! ||||||:!!|||||||||||| |||| ++{e}TyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnL 1222574 : ...........ag{T}TACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAA : 1222466 356 : ysMetPheAsnIleMetLeuMetArgSerLysLysSerCysAlaLeuThrValTyr : 373 ||:!!.!! !!! |||! !|||||||||! !::! !!||| !||||||!.! ysLeuIleTyrThrMetGlnMetArgSerIleArgProCysIleLeuThrAlaGly 1222465 : AGTTGATTTACACGATGCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGA : 1222412 374 : GlyLeuTyrGluLeuAsnMetGluAsnPheGlyThr >>>> Target Intron : 386 |||:!!:!!|||:!!|||!!:|||!:!||||||! ! 320 bp GlyValHisGluMetAsnIleGluSerPheGlyIle++ 1222411 : GGAGTGCATGAGATGAACATCGAGAGTTTCGGAATAgt.................. : 1222371 387 : 3 >>>> ThrPheLysAlaCysIleSerTyrPheThrMetMetLeuSerLeuLy : 401 .!!.!!|||||||||!!:|||||||||! !|||.!.||||||||||| ++AlaIleLysAlaCysMetSerTyrPheMetMetPheLeuSerLeuLy 1222370 : .......aggCTATTAAAGCGTGCATGTCCTATTTCATGATGTTCCTGTCGTTGAA : 1222008 402 : s : 401 | s 1222007 : A : 1222006 vulgar: AmOr98 263 401 . KQ414851.1 1223463 1222005 - 309 M 31 93 5 0 2 I 0 652 3 0 2 M 6 18 G 1 0 M 39 117 S 0 2 5 0 2 I 0 67 3 0 2 S 1 1 M 44 132 5 0 2 I 0 316 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222006 1223463 309 - . gene_id 4 ; sequence AmOr98 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1223371 1223463 . - . KQ414851.1 exonerate:protein2genome:local exon 1223371 1223463 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1223369 1223370 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222715 1223370 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1222715 1222716 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222578 1222714 . - . KQ414851.1 exonerate:protein2genome:local exon 1222578 1222714 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local splice5 1222576 1222577 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222507 1222577 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1222507 1222508 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222374 1222506 . - . KQ414851.1 exonerate:protein2genome:local exon 1222374 1222506 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1222372 1222373 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222054 1222373 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1222054 1222055 . - . intron_id 2 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1222006 1222053 . - . KQ414851.1 exonerate:protein2genome:local exon 1222006 1222053 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222006 1223463 309 - . alignment_id 4 ; Query AmOr98 ; Align 1223464 264 93 ; Align 1222715 295 18 ; Align 1222697 302 117 ; Align 1222506 342 132 ; Align 1222054 386 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr98 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 280 Query range: 139 -> 227 Target range: 1229491 -> 1229227 140 : AsnThrLeuLeuSerPheLeuIleLeuPheLeuLeuValProMetTyrPheProIl : 158 :!!.!!||||||! ! :!! !:!!|||||||||||||||:!!!:! !||| AspAlaLeuLeuPheAlaMetCysValPheLeuLeuValProLeuPheGlyProAl 1229491 : GATGCTTTACTCTTCGCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGC : 1229437 159 : eLeuAspMetIleAspAlaLeuAsnGlnThrArgSerArgGlnGlnLeuLeuArgV : 177 !||||||!!::!! ! !!! !|||:!!|||||| !!||||||||||||!!!|||| aLeuAspIleValLeuProSerAsnGluThrArgProArgGlnGlnLeuPheArgV 1229436 : CCTGGACATCGTCCTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAG : 1229380 178 : alAsnTyrMetValPheAsnAlaAspAspTyrPhePheTyrValTyrLeuGlnLeu : 195 ||||||||!!::!!|||:!! !! |||||||||||||||||||||:!!|||||| alAsnTyrIleIlePheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeu 1229379 : TTAACTATATAATTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTG : 1229326 196 : AlaTrpGlyAlaIleValIleValMetIleValIleThrValAspSerLeuTyrIl : 214 !||| !!.!!||||||:!!|||||| !:!!|||||||||||||||||||||!! PheTrpCysThrIleValLeuValMetAlaIleIleThrValAspSerLeuTyrMe 1229325 : TTTTGGTGTACAATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACAT : 1229269 215 : eIleIleIleHisHisValCysGlyLeuPheAlaValCys : 227 :|||||||||:!!|||!.! !!|||:!!||||||:!!||| tIleIleIleTyrHisAlaSerGlyMetPheAlaIleCys 1229268 : GATCATAATTTACCATGCCAGCGGAATGTTCGCTATATGC : 1229228 vulgar: AmOr98 139 227 . KQ414851.1 1229491 1229227 - 280 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229228 1229491 280 - . gene_id 5 ; sequence AmOr98 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229228 1229491 . - . KQ414851.1 exonerate:protein2genome:local exon 1229228 1229491 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229228 1229491 280 - . alignment_id 5 ; Query AmOr98 ; Align 1229492 140 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr98 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 261 Query range: 296 -> 401 Target range: 1243000 -> 1242524 297 : ValAsnLeuAspThrArgProGlnGluAlaIleArgAsnAlaValPheCysGlyAl : 315 :!!||||||||| ||||||:!!||| ! !|||! !||| !||| ! !|| IleAsnLeuAsp---ArgProGluGluPheAlaArgIleAlaCysPheLeuIleAl 1243000 : ATAAATCTAGAT---CGGCCTGAAGAATTTGCCAGAATTGCTTGTTTCCTTATAGC : 1242949 316 : aAsnGlnPheHisLeuPheValLeuSerLeuProGlyGlnIleLeuLeuAspHisC : 334 |.!.|||.!!||||||!!.|||:!!|||:!!||||||||||||:!! !|||!!. aGlnGlnLeuHisLeuLeuValIleSerValProGlyGlnIleIleThrAspGlnS 1242948 : TCAGCAACTCCACTTGTTAGTCATTAGTGTACCAGGGCAGATCATCACGGATCAAA : 1242892 335 : ysAlaGluLeuSerAsnThr{Il} >>>> Target Intron 1 >>>> {e} : 341 !!:!!:!!|||!!!! ! !{||} 72 bp {|} erSerLysLeuThrIleAsp{Il}++ ++{e} 1242891 : GTTCAAAGTTGACCATTGAC{AT}gt.........................ag{A} : 1242797 342 : TyrCysSerMetTrpTyrLysLeuProValLysIleGlnLysMetPheAsnIleMe : 360 ||| !||||||||||||:!! !|||||| !|||||||||!!:.!!:!!|||:! TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIleVa 1242796 : TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATATAGT : 1242742 361 : tLeuMetArgSerLysLysSerCysAlaLeuThrValTyrGlyLeuTyrGluLeuA : 379 :! !!!:|||||| ||| !!||| !|||..!!.! ||||||||||||:!!| lGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluMetA 1242741 : ACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAATGA : 1242685 380 : snMetGluAsnPheGlyThr >>>> Target Intron 2 >>>> ThrPheL : 388 ||!!:||||||||||||:!! 92 bp ||||||| snIleGluAsnPheGlySer++ ++ThrPheL 1242684 : ACATTGAGAATTTTGGATCAgt.........................agacTTTCA : 1242566 389 : ysAlaCysIleSerTyrPheThrMetMetLeuSerLeuLys : 401 ||.!!|||||||||||||||||||||:!:||||||!!!||| ysThrCysIleSerTyrPheThrMetLeuLeuSerPheLys 1242565 : AAACCTGCATATCGTACTTTACGATGCTCTTATCATTCAAA : 1242525 vulgar: AmOr98 296 401 . KQ414851.1 1243000 1242524 - 261 M 4 12 G 1 0 M 39 117 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 44 132 5 0 2 I 0 88 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242525 1243000 261 - . gene_id 6 ; sequence AmOr98 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1242870 1243000 . - . KQ414851.1 exonerate:protein2genome:local exon 1242870 1243000 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local splice5 1242868 1242869 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242798 1242869 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1242798 1242799 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242665 1242797 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242797 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 1 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242525 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242525 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242525 1243000 261 - . alignment_id 6 ; Query AmOr98 ; Align 1243001 297 12 ; Align 1242989 302 117 ; Align 1242797 342 132 ; Align 1242573 386 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr98 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 217 Query range: 261 -> 339 Target range: 1239468 -> 1238690 262 : AlaIleLysPheTyrAsnIleLeuAsnAsnSerSerGlnLeuSerTyrLeuLeuGl : 280 |||.!!!:!! !||||||:!!|||.!.!!.|||||| !||||||||||||!!!|| AlaPheArgCysTyrAsnValLeuGlnLysSerSerValLeuSerTyrLeuPheGl 1239468 : GCTTTCAGGTGTTACAATGTTCTGCAGAAAAGCAGTGTGCTCAGTTACTTGTTTCA : 1239414 281 : nIleGlyIleAsnIleMetGlyIleSerThrThrAlaPheGln >>>> Target : 295 |:!!|||:!!||||||:!!|||:!!|||..!:!!||| !!||| 5 nValGlyLeuAsnIleValGlyLeuSerValSerAlaValGln++ 1239413 : AGTTGGATTAAACATAGTGGGCCTTAGTGTGTCAGCTGTTCAAgt........... : 1239367 296 : Intron 1 >>>> LeuAlaValAsnLeuAspThrArgProGlnGluAlaIleA : 308 47 bp !!.!! !|||:!!||| ! ||| !! !|||:!:| ++ThrValGlyAsnIleAspAsp---ProThrValAlaLeuA 1239366 : ..............agACAGTGGGGAATATAGACGAT---CCGACAGTAGCTTTGA : 1238786 309 : rgAsnAlaValPheCysGlyAlaAsnGlnPheHisLeuPheValLeuSerLeuPro : 326 ||||||||..! !!!! ||||||!!.|||.!!|||||||||:!!:!!|||:!!||| rgAsnAlaThrValTrpGlyAlaLysGlnIleHisLeuPheIleIleSerIlePro 1238785 : GAAACGCTACGGTCTGGGGGGCTAAGCAAATTCACCTGTTCATCATCAGTATACCT : 1238732 327 : GlyGlnIleLeuLeuAspHisCysAlaGluLeuSerAsn : 339 ||||||:!:|||:!!|||||||||!.!|||||||||||| GlyGlnValLeuIleAspHisCysValGluLeuSerAsn 1238731 : GGACAGGTGCTTATAGATCATTGTGTGGAGCTGTCAAAC : 1238691 vulgar: AmOr98 261 339 . KQ414851.1 1239468 1238690 - 217 M 33 99 5 0 2 I 0 543 3 0 2 M 7 21 G 1 0 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1238691 1239468 217 - . gene_id 7 ; sequence AmOr98 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1239370 1239468 . - . KQ414851.1 exonerate:protein2genome:local exon 1239370 1239468 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1239368 1239369 . - . intron_id 1 ; splice_site "gt" KQ414851.1 exonerate:protein2genome:local intron 1238823 1239369 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1238823 1238824 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1238691 1238822 . - . KQ414851.1 exonerate:protein2genome:local exon 1238691 1238822 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1238691 1239468 217 - . alignment_id 7 ; Query AmOr98 ; Align 1239469 262 99 ; Align 1238823 295 21 ; Align 1238802 303 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr98 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 202 Query range: 263 -> 342 Target range: 1228927 -> 1228614 264 : LysPheTyrAsnIleLeuAsnAsnSerSerGlnLeuSerTyrLeuLeuGlnIleGl : 282 !:!||||||:!!|||||||||.!.||||||!:! !|||||||||||||||:!!|| ArgPheTyrAspIleLeuAsnGluSerSerArgAsnSerTyrLeuLeuGlnValGl 1228927 : AGGTTTTACGATATTCTAAACGAGAGCAGTCGAAACAGCTACTTGCTTCAGGTTGG : 1228873 283 : yIleAsnIleMetGlyIleSerThrThrAlaPheGlnLeu >>>> Target In : 296 |:!:!:!!!:|||.!!||||||..!|||||| ! ||| 79 b yLeuSerMetMetSerIleSerValThrAlaValGln---+- 1228872 : ATTGAGCATGATGAGCATCAGCGTGACTGCTGTGCAG---gc.............. : 1228832 297 : tron 1 >>>> AlaValAsnLeuAspThrArgProGlnGluAlaIleArgAsnA : 310 p !:!! ! ! !||||||...|||||||||||| !!: ++IleMetLeuAlaLeuAspArgProSerGluAlaIleArgTyrS 1228831 : ...........agATAATGCTCGCCCTGGATAGACCGAGCGAAGCTATTAGATATT : 1228713 311 : laValPheCysGlyAlaAsnGlnPheHisLeuPheValLeuSerLeuProGlyGln : 328 !!||| !! !|||!.! |||||||||||||||:!!:!!||||||||||||||| erValValLeuGlyGlyAlaGlnPheHisLeuPheIleIleSerLeuProGlyGln 1228712 : CTGTGGTTCTTGGAGGTGCGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAG : 1228659 329 : IleLeuLeuAspHisCysAlaGluLeuSerAsnThrIleTyr : 342 ! !|||:!!|||||||||.!! !|||!!!||| !!!:||| ThrLeuValAspHisCysThrMetLeuThrAsnAspMetTyr 1228658 : ACACTCGTGGATCATTGTACCATGCTAACGAACGATATGTAC : 1228615 vulgar: AmOr98 263 342 . KQ414851.1 1228927 1228614 - 202 M 31 93 G 1 0 5 0 2 I 0 75 3 0 2 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228615 1228927 202 - . gene_id 8 ; sequence AmOr98 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1228835 1228927 . - . KQ414851.1 exonerate:protein2genome:local exon 1228835 1228927 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local splice5 1228833 1228834 . - . intron_id 1 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1228756 1228834 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1228756 1228757 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228615 1228755 . - . KQ414851.1 exonerate:protein2genome:local exon 1228615 1228755 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228615 1228927 202 - . alignment_id 8 ; Query AmOr98 ; Align 1228928 264 93 ; Align 1228756 296 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr98 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 185 Query range: 136 -> 227 Target range: 1224300 -> 1224027 137 : LeuTyrArgAsnThrLeuLeuSerPheLeuIleLeuPheLeuLeuValProMetTy : 155 :::::: ::::!!|||! !! ! !!|||:!!:!!!:!:!! ! !!|||:!! IlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLeuIl 1224300 : attttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGAT : 1224246 156 : rPheProIleLeuAspMetIleAspAlaLeuAsnGlnThrArgSerArgGlnGlnL : 174 !|||:!!||||||:!::!!! !!||||||:!!|||||| !!|||::!! | eAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLeuL 1224245 : AAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTT : 1224189 175 : euLeuArgValAsnTyrMetValPheAsnAlaAspAspTyrPhePheTyrValTyr : 192 |||||! !|||!:!|||!!: !!.!.:!!! ! !!!!::!!|||!:! !||| !! euLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValAsn 1224188 : TGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAAT : 1224135 193 : LeuGlnLeuAlaTrpGlyAlaIleValIleValMetIleValIleThrValAspSe : 211 !!!!!.||| ! .!!!.!||| ! !! !|||!!::!!|||.!!||||||! PheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAspMe 1224134 : TTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATAT : 1224078 212 : rLeuTyrIleIleIleIleHisHisValCysGlyLeuPheAlaValCys : 227 !|||||||||! !|||||| !|||:!!||||||||||||||||||||| tLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaValCys 1224077 : GTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTGTGT : 1224028 vulgar: AmOr98 136 227 . KQ414851.1 1224300 1224027 - 185 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224028 1224300 185 - . gene_id 9 ; sequence AmOr98 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224028 1224300 . - . KQ414851.1 exonerate:protein2genome:local exon 1224028 1224300 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224028 1224300 185 - . alignment_id 9 ; Query AmOr98 ; Align 1224301 137 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr98 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 341 -> 383 Target range: 1228545 -> 1228419 342 : TyrCysSerMetTrpTyrLysLeuProValLysIleGlnLysMetPheAsnIleMe : 360 |||! !|||! !|||||||||:!! !!!.!|||.!!|||::!:!:.!! !!!!:|| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 361 : tLeuMetArgSerLysLysSerCysAlaLeuThrValTyrGlyLeuTyrGluLeuA : 379 |! !!!:|||:!! !||| !!||| !||||||!.! !||||||||||||:!!| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 380 : snMetGluAsnPhe : 383 |||||||||||||| snMetGluAsnPhe 1228433 : ACATGGAGAACTTT : 1228420 vulgar: AmOr98 341 383 . KQ414851.1 1228545 1228419 - 122 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228420 1228545 122 - . gene_id 10 ; sequence AmOr98 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228420 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228420 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228420 1228545 122 - . alignment_id 10 ; Query AmOr98 ; Align 1228546 342 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr98 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 101 -> 150 Target range: 1240295 -> 1240145 102 : PheAsnLysLeuLeuGluPheValValLysGluTrpAspGluLeuLysLeu<->As : 119 |||......||| ! !||||||:!!:!!|||!!:||||||!:!:!! || PheLysAsnLeuCysIleSerValValGluLysTrpGluGluLeuArgIleSerAs 1240295 : tttaaaaatttatgcattTCTGTGGTGGAAAAATGGGAAGAGTTGAGGATCAGTAA : 1240241 120 : nGluLeuHisIleLeuGluGluIleThrIleGlnGlySerLysIleAlaHisLeuT : 138 ||||||| !:!:|||||||||:!!||| !||||||||||||.........|||| nGluLeuSerValLeuGluGluValThrAlaGlnGlySerLysPheValGlnLeuT 1240240 : CGAGTTAAGCGTGCTGGAAGAAGTTACCGCCCAAGGGAGcaaatttgtacaattgt : 1240184 139 : yrArgAsnThrLeuLeuSerPheLeuIleLeuPheLeu : 150 |||||!:! !! |||||| ||| ||| yrArgSerGluTyrArgLeuPheLeuSerLeuArgLeu 1240183 : aCAGAAGCGAGTAtcgtttgtttctttcattaagactg : 1240146 vulgar: AmOr98 101 150 . KQ414851.1 1240295 1240145 - 104 M 17 51 G 0 3 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1240146 1240295 104 - . gene_id 11 ; sequence AmOr98 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1240146 1240295 . - . KQ414851.1 exonerate:protein2genome:local exon 1240146 1240295 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1240146 1240295 104 - . alignment_id 11 ; Query AmOr98 ; Align 1240296 102 51 ; Align 1240242 119 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr98 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 56 -> 101 Target range: 1229944 -> 1229809 57 : IleProThrThrPheGluIleTyrValSerIleHisAspLysAsnThrAspAlaVa : 75 :!!! ! ! !.!!|||!!:||||||..!:!:!.! ! ||||||! !|||! !:! ValGlnGlnLeuIleGluMetTyrValGlnLeuArgLysLysAsnMetAspAspMe 1229944 : GTTCAACAGTTGATCGAGATGTATGTGCAATTGCGTAAGAAGAATATGGACGATAT : 1229890 76 : lMetGluCysLeuProAsnLeuCysAlaSerLeuSerSerValValLysIleLeuA : 94 !|||||| !!!!! !!||| ! !|||:!! !!!!|||:!!||||||:!:|||| tMetGluSerPheAlaAsnThrIleAlaAlaAlaThrSerLeuValLysLeuLeuA 1229889 : GATGGAGAGTTTTGCGAATACTATTGCTGCCGCGACCAGCCTGGTGAAATTGTTGA : 1229833 95 : snValHisPheAsnArgGluAsn : 101 |||||:!!!!.|||||||||||| snValTyrLeuAsnArgGluAsn 1229832 : ACGTTTACTTAAACAGGGAAAAT : 1229810 vulgar: AmOr98 56 101 . KQ414851.1 1229944 1229809 - 104 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229810 1229944 104 - . gene_id 12 ; sequence AmOr98 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229810 1229944 . - . KQ414851.1 exonerate:protein2genome:local exon 1229810 1229944 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229810 1229944 104 - . alignment_id 12 ; Query AmOr98 ; Align 1229945 57 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 136 Query range: 125 -> 216 Target range: 1224300 -> 1224024 126 : PheTyrGluValSerIleTyrSerCysGlyPheMetPheLeuSerMetProSerIl : 144 ...:::... |||:!:!::! ! ! !!!.:!:!:!:!!|||.!.|||! !|| IlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLeuIl 1224300 : attttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGAT : 1224246 145 : eProLeuIleMetAsnValIleMetProLeuAsnGluSerArgSerArgGluLeuV : 163 | !! !:!!:!!:!!|||:!! !||||||||||||!!!||| !!|||..!|||: eAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLeuL 1224245 : AAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTT : 1224189 164 : alTyrPro<->SerTyrTyrPheValAspGluGlnLysTyrTyrTyrLeuIleThr : 180 !! !||| |||||| |||:!!|||||| ! :!!:!!!:!||| !:!:!.! euLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValAsn 1224188 : TGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAAT : 1224135 181 : GlyHisMetLeuAlaValCysLeuGlyHisValPheValTyrIleAlaCysAspIl : 199 !|||:!:! !.!! ! :!!..! !! !.!.:!! |||||| |||!! PheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAspMe 1224134 : TTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATAT : 1224078 200 : eAsnLeuIleHisValValHisHisGlyCysAlaLeuLeuThrIleSerGly : 216 : ! !||| !:!!:!! !||| !|||!.!|||!!!.!!:!:!!!||| tLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaValCysGly 1224077 : GTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: AmOr107 125 216 . KQ414851.1 1224300 1224024 - 136 M 40 120 G 0 3 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224300 136 - . gene_id 1 ; sequence AmOr107 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224300 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224300 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224300 136 - . alignment_id 1 ; Query AmOr107 ; Align 1224301 126 120 ; Align 1224178 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 129 -> 216 Target range: 1243860 -> 1243599 130 : SerIleTyrSerCysGlyPheMetPheLeuSerMetProSerIleProLeuIleMe : 148 !!!:!:!:!! !! !..!.!.!!:|||:!!! !.!.|||! !||||||! !|||:! ThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleLe 1243860 : ACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATT : 1243806 149 : tAsnValIleMetProLeuAsnGluSerArgSerArgGluLeuValTyrProSerT : 167 !:!!|||:!! ||||||||||||!!!||||||||| ! ||| uAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuG 1243805 : GGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgc : 1243749 168 : yrTyrPheValAspGluGlnLysTyrTyrTyrLeuIleThrGlyHisMetLeuAla : 185 |||.!. !!||| :::||| :::||| ::: ! !:!!! ! ! lnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrp 1243748 : aataccTGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGCTGG : 1243695 186 : ValCysLeuGlyHisValPheValTyrIleAlaCysAspIleAsnLeuIleHisVa : 204 !! !!! ! !:!!.!.||| |||.!! ||| ! !:!: :! CysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValValIl 1243694 : TGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAAT : 1243638 205 : lValHisHisGlyCysAlaLeuLeuThrIleSerGly : 216 !:!!|||||| !|||!.!|||!!!.!!:!!!!!||| eIleHisHisThrCysGlyLeuPheAlaValCysGly 1243637 : CATTCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: AmOr107 129 216 . KQ414851.1 1243860 1243599 - 120 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243860 120 - . gene_id 2 ; sequence AmOr107 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243860 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243860 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243860 120 - . alignment_id 2 ; Query AmOr107 ; Align 1243861 130 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 122 -> 221 Target range: 1240106 -> 1239806 123 : PheCysSerPheTyrGluValSerIleTyrSerCysGlyPheMetPheLeuSerMe : 141 !:! ! !!:! !..!||| !:!!!:!||| |||:::|||||| !:! TyrIleTyrTyrIleSerValValLeuPheSerValLeuPheIlePheLeuValVa 1240106 : TACATATATTACATTTCAGTCGTTTTATTTTCcgttttgttcatttttctggTGGT : 1240052 142 : tProSerIleProLeuIleMetAsnValIleMetProLeuAsnGluSerArgSerA : 160 :||| ...||| :::::::!!:!!:!!! ||||||||||||!!!|||:!!| lProIlePheProProLeuLeuAspIleLeuLysProLeuAsnGluThrArgAlaA 1240051 : TCcgatttttcctcctcttctggACATTTTAAAACCTTTAAACGAAACCCGAGCAC : 1239995 161 : rgGluLeuValTyrProSerTyrTyrPheValAspGluGlnLysTyrTyrTyrLeu : 178 ||::: :::::: !|||.!.:!! !!!:::! ! ! ! !||| rgGlnLysIlePheLysValAsnTyrLeuIleIleAspArgAspGluGlnAlaLeu 1239994 : gccagaaaatattcaaagttaaTTACCTGATCATTGACAGGGATGAACAAGCTCTG : 1239941 179 : IleThr<->GlyHisMetLeuAlaValCysLeuGlyHisValPheValTyrIleAl : 196 |||||| !|||:!!! ! !..! !:!! !! !! !.!. ! :!!:: IleThrTyrPheHisLeuSerTrpThrThrIleThrLeuGlyIleSerValLeuSe 1239940 : ATCACATATTTTCACTTGTCTTGGACAACTATCACTCTTGGGATATCTGTGCTTAG : 1239884 197 : aCysAspIleAsnLeuIleHisValValHisHisGlyCysAlaLeuLeuThrIleS : 215 !! !!::!:! ! !:!!! !:!!:!!|||||| ! !!!.!|||!!!.!!:!:: rSerGluLeuIleTyrValLeuLeuIleHisHisThrSerGlyLeuPheAlaValA 1239883 : CTCAGAATTGATATACGTCCTTCTTATTCATCATACCAGCGGTCTGTTTGCTGTGG : 1239827 216 : erGlyTyrHisPheLysHis : 221 !!||| ||||||||| laGly***IlePheLysHis 1239826 : CTGggtaaatattcaaacat : 1239807 vulgar: AmOr107 122 221 . KQ414851.1 1240106 1239806 - 113 M 58 174 G 0 3 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239807 1240106 113 - . gene_id 3 ; sequence AmOr107 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239807 1240106 . - . KQ414851.1 exonerate:protein2genome:local exon 1239807 1240106 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239807 1240106 113 - . alignment_id 3 ; Query AmOr107 ; Align 1240107 123 174 ; Align 1239930 181 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 142 Query range: 130 -> 216 Target range: 1243857 -> 1243599 131 : ValTyrSerCysAlaPheMetPheLeuValIleProThrIleProProIleLeuAs : 149 :!!!:!! !! !:!!.!.!!:|||:!!:!!.!!||| !|||||||||||||||:! LeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleLeuAs 1243857 : TTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGA : 1243803 150 : nIleValAlaProLeuAsnValSerArgSerArgGluPheIleTyrProThrTyrT : 168 !:!!|||:!!|||||||||! !!!!||||||||| ! ::: | pValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuGlnT 1243802 : TGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgcaat : 1243746 169 : yrPheValAspGluGlnLysTyrTyrTyrProIleLeuThrHisMetIleAlaVal : 186 ||.!. !!||| :::||| :::||| ::: ..!:!!! ! ! ! yrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCys 1243745 : accTGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGCTGGTGC : 1243692 187 : IleLeuValLeuSerSerValTyrLeuAlaCysAspThrAsnLeuValGlnIleVa : 205 !!!:!! !! !! !||| :!!.!! |||.!! ! !||| !|||:! SerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValValIleIl 1243691 : TCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCAT : 1243635 206 : lHisHisGlyCysAlaLeuLeuAlaIleSerGly : 216 !|||||| !|||!.!|||!!!|||:!!!!!||| eHisHisThrCysGlyLeuPheAlaValCysGly 1243634 : TCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: AmOr109 130 216 . KQ414851.1 1243857 1243599 - 142 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243857 142 - . gene_id 1 ; sequence AmOr109 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243857 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243857 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243857 142 - . alignment_id 1 ; Query AmOr109 ; Align 1243858 131 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 140 Query range: 125 -> 216 Target range: 1224300 -> 1224024 126 : LeuTyrLysValMetValTyrSerCysAlaPheMetPheLeuValIleProThrIl : 144 ::::::... !:!!!::! ! ! !!!.:!:!:!:!! !.!!||| !|| IlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLeuIl 1224300 : attttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGAT : 1224246 145 : eProProIleLeuAsnIleValAlaProLeuAsnValSerArgSerArgGluPheI : 163 | !|||:!!|||:!!:!!|||||||||||||||! !!!!||| !!|||..!.!!: eAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLeuL 1224245 : AAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTT : 1224189 164 : leTyrPro<->ThrTyrTyrPheValAspGluGlnLysTyrTyrTyrProIleLeu : 180 !: !||| !:!||| |||:!!|||||| ! :!!:!!!:!||| !:!: ! euLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValAsn 1224188 : TGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAAT : 1224135 181 : ThrHisMetIleAlaValIleLeuValLeuSerSerValTyrLeuAlaCysAspTh : 199 !|||:!: !.!! !:!::!! !! !.!!! !:!! :!!||| |||! PheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAspMe 1224134 : TTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATAT : 1224078 200 : rAsnLeuValGlnIleValHisHisGlyCysAlaLeuLeuAlaIleSerGly : 216 ! ! !:!! |||:!! !||| !|||!.!|||!!!|||:!:!!!||| tLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaValCysGly 1224077 : GTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: AmOr109 125 216 . KQ414851.1 1224300 1224024 - 140 M 40 120 G 0 3 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224300 140 - . gene_id 2 ; sequence AmOr109 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224300 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224300 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224300 140 - . alignment_id 2 ; Query AmOr109 ; Align 1224301 126 120 ; Align 1224178 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr104 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 777 Query range: 2 -> 229 Target range: 1235284 -> 1234059 3 : ValPheGlnLysThrArgAsnLysCysIleAsnIlePheAspIleProTyrTyrLy : 21 !.!||||||! !!.!!:!!..:!! ! ...||||||...||| !:!!|||:! AlaPheGlnThrAsnLysThrGlnAsnAsnGluIlePheGlnIleGlnHisTyrGl 1235284 : GCATTTCAGACAAACAAAACACAGAATaacgaaatattccaaatacaACATTATCA : 1235230 22 : sLeuLeuGluLysTyrMetLysPheLeuGlyGlnAspProArgGlnArgAspGlyP : 40 !! !|||:::|||:::::::::|||||||||||||||||| !|||||||||||| nProLeuGlnLysPheLeuGlnPheLeuGlyGlnAspProSerGlnArgAspGlyT 1235229 : ACCGcttcagaaatttttacaatttttaggaCAAGATCCGTCACAAAGAGATGGAA : 1235173 41 : heArgAsnIleIleValIleValMetValAlaSerIleSerGlyIleLeuIlePro : 58 !|||..!! !||||||.!!||||||||| !|||:!:! !||||||||||||||| hrArgGlySerIleValPheValMetValLeuSerValLeuGlyIleLeuIlePro 1235172 : CCAGGGGTAGTATTGTATTTGTAATGGTGCTTAGTGTGTTAGGCATTCTTATTCCG : 1235119 59 : Thr >>>> Target Intron 1 >>>> SerLeuGluLeuTyrThrSerLeu : 67 ||| 343 bp ! !:!!|||:!!|||..!..!||| Thr++ ++PheIleGluIleTyrValGlnLeu 1235118 : acggt.........................agTTTATCGAGATATATGTACAACTT : 1234749 68 : ArgAspLysAsnMetAspAlaValIleGluCysLeuProHisLeuIleAlaAlaAl : 86 !!!!:|||||||||||||||||||||||||||||||||:!! !||||||||||| CysGluLysAsnMetAspAlaValIleGluCysLeuProAsnGlyIleAlaAlaAl 1234748 : TGTGAGAAGAATATGGACGCAGTGATCGAGTGTTTGCCGAATGGTATCGCAGCCGC : 1234692 87 : aThrSerValValLysLeuLeuAsnIleHisPheAsnArgGluAsn >>>> Tar : 102 |||||||||||||||||||||||||:!!:!!!!.|||||||||||| aThrSerValValLysLeuLeuAsnValTyrLeuAsnArgGluAsn++ 1234691 : GACCAGCGTGGTGAAATTGTTGAACGTTTACTTAAACAGGGAAAATgt........ : 1234642 103 : get Intron 2 >>>> PheLysLysLeuPheGluPheIleThrLysGluTrpG : 114 75 bp |||:::|||:::::::::.!!:!:|||!:!||||||| ++PheGlnLysMetTyrAspLeuValThrArgGluTrpG 1234641 : .................agtttcaaaaaatgtatgaTCTTGTGACAAGAGAGTGGG : 1234533 115 : luLysPheGluLeuAsnAsnGlnPheHisValLeuGluGluIleThrIleLysGly : 132 ||:!!!!...!:!!|||:!!:!!!!.||||||||||||!!:||||||!!::!!||| luGlnLeuArgMetAsnAspGluLeuHisValLeuGluAspIleThrMetGlnGly 1234532 : AGCAGTTGAGGATGAACGACGAGTTGCATGTGCTTGAAGACATTACCATGCAAGGT : 1234479 133 : SerLysMetAlaGlnLeuTyrArg{A} >>>> Target Intron 3 >>>> : 141 .!!|||:!:||||||!!!||||||{|} 126 bp GlyLysLeuAlaGlnPheTyrArg{A}++ ++ 1234478 : GGTAAACTCGCGCAATTCTACAGA{A}gt.........................ag : 1234327 142 : {sn}ThrLeuLeuSerPheMetValLeuPheLeuLeuValProLeuIlePheProP : 159 {||}|||||||||||||||||||||:!!||||||||||||||||||:!!||||||| {sn}ThrLeuLeuSerPheMetValValPheLeuLeuValProLeuValPheProP 1234326 : {AT}ACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCAT : 1234272 160 : heLeuAspIleValHisProLeuAsnGluThrArgProArgGlnGlnLeuPheArg : 177 ||||||||:!!|||! !|||||||||||||||||||||||||||||| !|||||| heLeuAspValValLeuProLeuAsnGluThrArgProArgGlnGlnGlyPheArg 1234271 : TCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAGGATTCAGA : 1234218 178 : ValAsnTyrLeuIlePheAsnHisAsnAspTyrPhePheTyrIleTyrLeuGlnLe : 196 |||||||||||| !|||:!!.!. |||||||||||| !:!:|||!!!||||| ValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyrPheGlnLe 1234217 : GTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATT : 1234161 197 : uAlaTrpGlySerIleIleValValMetIleIleValThrValAspSerLeuTyrM : 215 ||||||||||:!!:!!:!!|||||||||||||||:!!||||||||||||||||||| uAlaTrpGlyAlaValValValValMetIleIleIleThrValAspSerLeuTyrM 1234160 : GGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTCGTTGTACA : 1234104 216 : etIleIleIleHisHisSerSerGlyMetPheAlaMetCysGly : 229 |||||||||||||||||:!!|||||||||||||||:!!|||||| etIleIleIleHisHisAlaSerGlyMetPheAlaValCysGly 1234103 : TGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTGTGCGGG : 1234060 vulgar: AmOr104 2 229 . KQ414851.1 1235284 1234059 - 777 M 57 171 5 0 2 I 0 339 3 0 2 M 42 126 5 0 2 I 0 71 3 0 2 M 39 117 S 0 1 5 0 2 I 0 122 3 0 2 S 1 2 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1235284 777 - . gene_id 1 ; sequence AmOr104 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1235114 1235284 . - . KQ414851.1 exonerate:protein2genome:local exon 1235114 1235284 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1235112 1235113 . - . intron_id 1 ; splice_site "gt" KQ414851.1 exonerate:protein2genome:local intron 1234771 1235113 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1234771 1234772 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1234645 1234770 . - . KQ414851.1 exonerate:protein2genome:local exon 1234645 1234770 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234643 1234644 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1234570 1234644 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1234570 1234571 . - . intron_id 1 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1234452 1234569 . - . KQ414851.1 exonerate:protein2genome:local exon 1234452 1234569 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234450 1234451 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1234326 1234451 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1234326 1234327 . - . intron_id 2 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1234060 1234325 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234325 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1235284 777 - . alignment_id 1 ; Query AmOr104 ; Align 1235285 3 171 ; Align 1234771 60 126 ; Align 1234570 102 117 ; Align 1234324 142 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr104 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 753 Query range: 1 -> 404 Target range: 1246735 -> 1242524 2 : AspValPheGlnLysThrArgAsnLysCysIleAsnIlePheAspIleProTyrTy : 20 ...||||||||||||! !..!!.. ! !::!|||||||||.!!|||||||| SerValPheGlnLysArgGluArgHisGluGlySerIlePheAspPheProTyrTy 1246735 : TCAGTGTTTCAGAAAAGGGAAAGACACGAAGGTTCTATATTTGACTTTCCTTATTA : 1246681 21 : rLysLeuLeuGluLysTyrMetLysPheLeuGlyGlnAspProArgGlnArgAspG : 39 | ...:::... ||| !|||||||||||| !!||| !||| ! ! rGlySerPheLysAsnAsnMetLeuPheLeuGlyGlnTyrProTyrGlnSerLysL 1246680 : CggatcgtttaaaaataatatgctATTCTTGGGACAATATCCATATCAATCGAAAT : 1246624 40 : lyPheArgAsnIleIleValIleValMetValAlaSerIleSerGlyIleLeuIle : 57 ... ... !:!!||||||..!!!! !!!!.!!:!!:!!||| euThrGluIlePheAsnGluThrLeuMetValCysThrTyrThrSerLeuIleIle 1246623 : tgactgaaatatttaatgaaacCCTGATGGTATGCACCTATACGAGTCTCATAATT : 1246570 58 : ProThr >>>> Target Intron 1 >>>> SerLeuGluLeuTyrThrSer : 66 ! ! 111 bp !:!!:!!:!!!:! !:!! LeuGln++ ++ValIleGlnMetPheGluAla 1246569 : TTACAGgt.........................agGTTATACAAATGTTCGAAGCG : 1246432 67 : LeuArgAspLysAsnMetAspAlaValIleGluCysLeuProHisLeuIleAlaAl : 85 :!!! !! |||:!!!!:||||||..!!!:||| !:!!||| :!!:!!.!!! IleIleValLysAspIleAspAlaThrMetGluThrValProValIleValThrGl 1246431 : ATAATTGTAAAGGACATCGATGCAACGATGGAAACCGTACCTGTAATAGTCACCGA : 1246375 86 : aAlaThrSerValValLysLeuLeuAsnIleHisPheAsnArgGluAsn >>>> : 102 ! !... |||:::|||||||||||| ! !.!!|||!:!! !!!. uLeuValCysValIleLysLeuLeuAsnHisIleIleAsnLysGlyLys++ 1246374 : ATTGgtttgtgtaataaaattgctGAATCATATCATCAATAAAGGAAAGgt..... : 1246322 103 : Target Intron 2 >>>> PheLysLysLeuPheGluPheIleThrLysGluT : 113 1270 bp ||| ! ||||||!:!!!:.!!!!:! !||||||| ++PheAspLysLeuTyrAspIleMetLysLysGluT 1246321 : ....................agTTCGACAAGTTGTACGATATCATGAAGAAAGAAT : 1245021 114 : rpGluLysPheGluLeuAsnAsnGlnPheHisValLeuGluGluIleThrIleLys : 131 ||!!:! !!!....|||:!!.!.||| !!.:!!|||||||||||||||! !::! rpAspMetLeuSerLeuAspGluGln---GlnIleLeuGluGluIleThrLysArg 1245020 : GGGATATGTTAAGTCTCGACGAGCAG---CAGATTCTCGAAGAAATCACTAAACGA : 1244970 132 : GlySerLysMetAlaGlnLeuTyrArg{A} >>>> Target Intron 3 >>> : 141 |||||||||:!:.!!.!.:!!||||||{!} 1077 bp GlySerLysLeuThrAsnIleTyrArg{S}++ 1244969 : GGAAGTAAATTAACCAATATATACAGA{A}gt........................ : 1244937 142 : > {sn}ThrLeuLeuSerPheMetValLeuPheLeuLeuValProLeuIlePheP : 158 {:!}||||||!!!! !||| !:!!:!!|||:!!||| !!||||||||| | ++{er}ThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProP 1244936 : .ag{GT}ACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGC : 1243812 159 : roPheLeuAspIleValHisProLeuAsnGluThrArgProArgGlnGlnLeuPhe : 176 ||.!.||||||:!!||| |||||||||||||||||| !!||| !::::::... roIleLeuAspValValSerProLeuAsnGluThrArgSerArgIleGluValIle 1243811 : CAATATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaata : 1243758 177 : ArgValAsnTyrLeuIlePheAsnHisAsnAspTyrPhePheTyrIleTyrLeuGl : 195 ::::::...|||||| |||:!! ... |||::: :::|||:!! ! LysLeuGlnTyrLeu---PheAspMetGluLysAsnPheTyrSerLeuTyrValTy 1243757 : aaattgcaataccTG---TTCGACAtggagaagaatttttattcattatacGTCTA : 1243704 196 : nLeuAlaTrpGlySerIleIleValValMetIleIleValThrValAspSerLeuT : 214 !!.!||| !!|||.!!!!:..!:!!|||:!!|||:!!|||:!!|||:!!|||| rThrGlyTrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuT 1243703 : CACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTAT : 1243647 215 : yrMetIleIleIleHisHisSerSerGlyMetPheAlaMetCys{Gl} >>>> T : 229 ||:!!:!!||||||||||||!!!!!!|||:!:||||||:!:|||{||} yrValValIleIleHisHisThrCysGlyLeuPheAlaValCys{Gl}++ 1243646 : ATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCTGTTTGC{GG}gt...... : 1243598 230 : arget Intron 4 >>>> {y}TyrLysValGlnGluAlaThrLysTyrGlnAs : 240 318 bp {|}! !:!!|||...!!: ! !!..||| || ++{y}SerGlnValSerAspLysTyrSerTyr---As 1243597 : ...................ag{C}TCTCAAGTTAGTGATAAATACAGTTAC---AA : 1243254 241 : nLeuPheAsnAspArgIleIleSerGluAsnTyrThrTyrGluGlnLeuLysAsnC : 259 |:!! ::: ::: ...::: ..! ! ! |||!:! nIle***SerLeuLysLysLysLysLys***ArgValGlnThrPheLeuArgPheV 1243253 : TATTtagtcgttaaaaaaaaaaaagaaataacgagTACAAACATTTCTAAGGttcg : 1243197 260 : ysIleThrIleHisAsnLysAlaLeuGlnPheTyrAsnIleLeuAsnGluSerSer : 277 ||| ||||||:!! !!!...! !!:!:!!! !:!!||||||! !!!! alIlePheIleHisAsp------PheSerSerPheAspThrIleAsnGluIleThr 1243196 : ttatttttatacatgAT------TTCAGCTCTTTCGATACCATAAACGAAATCACT : 1243149 278 : ArgAsnSerTyrLeuIleGlnValGlyLeuAsnMetMetGlyIleSerValThrAl : 296 !!!!..!!!||||||.!!||||||||||||||||||!!:|||||||||||||||:! SerThrCysTyrLeuPheGlnValGlyLeuAsnMetIleGlyIleSerValThrSe 1243148 : AGCACATGTTACTTGTTTCAAGTCGGACTTAATATGATCGGTATTAGCGTGACGTC : 1243092 297 : aValGln >>>> Target Intron 5 >>>> ThrValValAsnLeuAspAr : 305 !|||! ! 77 bp .!! !!:!!||||||||||| rValLeu++ ++AlaPheIleAsnLeuAspAr 1243091 : TGTTCTAgt.........................agGCCTTTATAAATCTAGATCG : 1242988 306 : gProGluGluAlaIleArgThrAlaValPheLeuGlyAlaGluGlnPheHisLeuP : 324 |||||||||| ! !|||! !||| !|||||| !|||:!!|||.!!||||||! gProGluGluPheAlaArgIleAlaCysPheLeuIleAlaGlnGlnLeuHisLeuL 1242987 : GCCTGAAGAATTTGCCAGAATTGCTTGTTTCCTTATAGCTCAGCAACTCCACTTGT : 1242931 325 : heValIleSerLeuProGlyGlnValLeuLeuAspHisCysThrGluLeuAlaAsn : 342 !.|||||||||:!!|||||||||:!!:!! !|||!!. !!:!!:!!|||.!!! ! euValIleSerValProGlyGlnIleIleThrAspGlnSerSerLysLeuThrIle 1242930 : TAGTCATTAGTGTACCAGGGCAGATCATCACGGATCAAAGTTCAAAGTTGACCATT : 1242877 343 : Asn{Il} >>>> Target Intron 6 >>>> {e}TyrSerSerThrTrpTy : 350 :!!{||} 72 bp {|}|||!:!|||! !||||| Asp{Il}++ ++{e}TyrAsnSerMetTrpTy 1242876 : GAC{AT}gt.........................ag{A}TATAACTCGATGTGGTA : 1242781 351 : rArgIleProValLysIleGlnLysValLeuHisMetMetGlnIleArgSerLysL : 369 |!:!! !|||||| !|||||||||:!!||||||!!::!:|||||||||||| | rGlnThrProValTrpIleGlnLysIleLeuHisIleValGlnIleArgSerGlyL 1242780 : TCAAACACCGGTGTGGATTCAAAAAATACTTCATATAGTACAAATAAGGTCTGGCA : 1242724 370 : ysProCysSerLeuThrAlaGlyGlyLeuTyrGluMetAsnMetGluAsnPheGly : 387 ||||||||!.!|||..!||||||||||||||||||||||||!!:|||||||||||| ysProCysLysLeuValAlaGlyGlyLeuTyrGluMetAsnIleGluAsnPheGly 1242723 : AACCGTGCAAATTGGTAGCAGGAGGATTATACGAAATGAACATTGAGAATTTTGGA : 1242670 388 : Ile >>>> Target Intron 7 >>>> ThrPheLysThrCysMetSerTyr : 396 ! 92 bp |||||||||||||||!!:|||||| Ser++ ++ThrPheLysThrCysIleSerTyr 1242669 : TCAgt.........................agacTTTCAAAACCTGCATATCGTAC : 1242551 397 : PheThrMetLeuMetSerLeuLys : 404 ||||||||||||:!:|||!!!||| PheThrMetLeuLeuSerPheLys 1242550 : TTTACGATGCTCTTATCATTCAAA : 1242525 vulgar: AmOr104 1 404 . KQ414851.1 1246735 1242524 - 753 M 58 174 5 0 2 I 0 107 3 0 2 M 42 126 5 0 2 I 0 1266 3 0 2 M 20 60 G 1 0 M 18 54 S 0 1 5 0 2 I 0 1073 3 0 2 S 1 2 M 40 120 G 1 0 M 46 138 S 0 2 5 0 2 I 0 314 3 0 2 S 1 1 M 9 27 G 1 0 M 25 75 G 2 0 M 32 96 5 0 2 I 0 73 3 0 2 M 45 135 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 44 132 5 0 2 I 0 88 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242525 1246735 753 - . gene_id 2 ; sequence AmOr104 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1246562 1246735 . - . KQ414851.1 exonerate:protein2genome:local exon 1246562 1246735 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1246560 1246561 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1246451 1246561 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1246451 1246452 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1246325 1246450 . - . KQ414851.1 exonerate:protein2genome:local exon 1246325 1246450 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1246323 1246324 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1245055 1246324 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1245055 1245056 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1244940 1245054 . - . KQ414851.1 exonerate:protein2genome:local exon 1244940 1245054 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local splice5 1244938 1244939 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243863 1244939 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1243863 1243864 . - . intron_id 2 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1243601 1243862 . - . KQ414851.1 exonerate:protein2genome:local exon 1243601 1243862 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local splice5 1243599 1243600 . - . intron_id 4 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243283 1243600 . - . intron_id 4 KQ414851.1 exonerate:protein2genome:local splice3 1243283 1243284 . - . intron_id 3 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1243084 1243282 . - . KQ414851.1 exonerate:protein2genome:local exon 1243084 1243282 . - . insertions 0 ; deletions 3 KQ414851.1 exonerate:protein2genome:local splice5 1243082 1243083 . - . intron_id 5 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243007 1243083 . - . intron_id 5 KQ414851.1 exonerate:protein2genome:local splice3 1243007 1243008 . - . intron_id 4 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242870 1243006 . - . KQ414851.1 exonerate:protein2genome:local exon 1242870 1243006 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242868 1242869 . - . intron_id 6 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242798 1242869 . - . intron_id 6 KQ414851.1 exonerate:protein2genome:local splice3 1242798 1242799 . - . intron_id 5 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242665 1242797 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242797 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 7 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 7 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 6 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242525 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242525 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242525 1246735 753 - . alignment_id 2 ; Query AmOr104 ; Align 1246736 2 174 ; Align 1246451 60 126 ; Align 1245055 102 60 ; Align 1244995 123 54 ; Align 1243861 142 120 ; Align 1243741 183 138 ; Align 1243282 230 27 ; Align 1243255 240 75 ; Align 1243180 267 96 ; Align 1243007 299 135 ; Align 1242797 345 132 ; Align 1242573 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr104 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 535 Query range: 267 -> 405 Target range: 1233762 -> 1233123 268 : GlnPheTyrAsnIleLeuAsnGluSerSerArgAsnSerTyrLeuIleGlnValGl : 286 ::!||||||:!!|||||||||||||||||||||||||||||||||||||||||||| ArgPheTyrAspIleLeuAsnGluSerSerArgAsnSerTyrLeuIleGlnValGl 1233762 : AGGTTTTACGATATTCTAAACGAGAGCAGTCGAAATAGCTACTTGATTCAGGTTGG : 1233708 287 : yLeuAsnMetMetGlyIleSerValThrAlaValGln >>>> Target Intro : 299 ||||||||||||||||||||||||||||||||||||| 80 bp yLeuAsnMetMetGlyIleSerValThrAlaValGln+- 1233707 : ATTGAACATGATGGGCATTAGCGTGACCGCTGTCCAGgc................. : 1233667 300 : n 1 >>>> ThrValValAsnLeuAspArgProGluGluAlaIleArgThrAlaV : 314 ||||||:!!!..||||||||||||! !||||||:!!||| !|||| ++ThrValLeuThrLeuAspArgProAlaGluAlaLeuArgCysAlaV 1233666 : ........agACAGTCCTCACACTGGACAGGCCGGCAGAAGCTCTTAGATGTGCTG : 1233544 315 : alPheLeuGlyAlaGluGlnPheHisLeuPheValIleSerLeuProGlyGlnVal : 332 ||||||||! !|||||||||||||||||||||:!!||||||||||||||||||..! alPheLeuValAlaGluGlnPheHisLeuPheIleIleSerLeuProGlyGlnThr 1233543 : TGTTCCTTGTAGCGGAGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACA : 1233490 333 : LeuLeuAspHisCysThrGluLeuAlaAsnAsn{Il} >>>> Target Intro : 344 |||:!!||||||||||||:!!|||:!!!!.:!!{||} 70 bp LeuValAspHisCysThrLysLeuSerLysAsp{Il}++ 1233489 : CTCGTGGATCATTGTACGAAACTATCGAAGGAT{AT}gt................. : 1233450 345 : n 2 >>>> {e}TyrSerSerThrTrpTyrArgIleProValLysIleGlnLysV : 359 {|}||||||||||||||||||!:!:!!|||!.!|||.!!|||::!| ++{e}TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgV 1233449 : ........ag{A}TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAG : 1233339 360 : alLeuHisMetMetGlnIleArgSerLysLysProCysSerLeuThrAlaGlyGly : 377 ||:!!:!!! !||||||||||||:!! !||||||||| !||||||||||||||| alIleTyrThrMetGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGly 1233338 : TAATTTACACGATGCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGA : 1233285 378 : LeuTyrGluMetAsnMetGluAsnPheGlyIle >>>> Target Intron 3 : 389 |||||||||||||||||||||||||||!.!! ! 75 bp LeuTyrGluMetAsnMetGluAsnPheAlaAsn++ 1233284 : TTGTATGAAATGAACATGGAGAACTTTGCAAACgt..................... : 1233247 390 : >>>> ThrPheLysThrCysMetSerTyrPheThrMetLeuMetSerLeuLysLy : 405 |||||||||||||||||||||||||||||||||||||||||||||!:!:! ++ThrPheLysThrCysMetSerTyrPheThrMetLeuMetSerLeuArgGl 1233246 : ....agaCATTCAAAACGTGCATGTCATACTTCACAATGCTGATGTCACTTAGAGA : 1233126 406 : s : 405 ! u 1233125 : A : 1233124 vulgar: AmOr104 267 405 . KQ414851.1 1233762 1233123 - 535 M 31 93 5 0 2 I 0 76 3 0 2 M 45 135 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 44 132 5 0 2 I 0 71 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233124 1233762 535 - . gene_id 3 ; sequence AmOr104 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233670 1233762 . - . KQ414851.1 exonerate:protein2genome:local exon 1233670 1233762 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233668 1233669 . - . intron_id 1 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1233590 1233669 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233590 1233591 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233453 1233589 . - . KQ414851.1 exonerate:protein2genome:local exon 1233453 1233589 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233451 1233452 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233383 1233452 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1233383 1233384 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233250 1233382 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233382 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 2 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233124 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233124 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233124 1233762 535 - . alignment_id 3 ; Query AmOr104 ; Align 1233763 268 93 ; Align 1233590 299 135 ; Align 1233382 345 132 ; Align 1233175 389 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr104 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 485 Query range: 137 -> 388 Target range: 1224300 -> 1222373 138 : LeuTyrArgAsnThrLeuLeuSerPheMetValLeuPheLeuLeuValProLeuIl : 156 :::::: ::::!!|||! !! ! !!:!!:!!:!!!:!:!! ! !!|||||||| IlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLeuIl 1224300 : attttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGAT : 1224246 157 : ePheProPheLeuAspIleValHisProLeuAsnGluThrArgProArgGlnGlnL : 175 | !||| !!||||||:!!||| ||||||||||||||||||||||||::!! | eAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLeuL 1224245 : AAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTT : 1224189 176 : euPheArgValAsnTyrLeuIlePheAsnHisAsnAspTyrPhePheTyrIleTyr : 193 ||.!!! !|||!:!|||:!!.!!.!.:!!.!. !!!!::!!|||!:! !:!: !! euLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValAsn 1224188 : TGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAAT : 1224135 194 : LeuGlnLeuAlaTrpGlySerIleIleValValMetIleIleValThrValAspSe : 212 !!!!!.||| ! .!! !||| ! !! !|||!!:|||:!!.!!||||||! PheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAspMe 1224134 : TTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATAT : 1224078 213 : rLeuTyrMetIleIleIleHisHisSerSerGlyMetPheAlaMetCys{Gl} > : 229 !||||||!!:! !|||||| !||| !!!!|||:!!||||||:!!|||{||} tLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaValCys{Gl}++ 1224077 : GTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTGTGT{GG}gt. : 1224023 230 : >>> Target Intron 1 >>>> {y}TyrLysValGlnGluAlaThrLysTyr : 238 453 bp {|}!:!!:! !:!! !! !..!!!.!:: +-{y}PheArgSerLysMetAspValAsnTrp 1224022 : ........................ac{G}TTCAGATCAAAAATGGACGTAAATTGG : 1223547 239 : GlnAsnLeuPheAsnAspArgIleIleSerGluAsnTyrThrTyrGluGlnLeuLy : 257 !::!||| !.. !|||:!::!!||||||||| !:! !!:!!.|||! ThrSerLeu---ArgArgArgValLeuSerGluAsn---SerMetAspHisLeuTh 1223546 : ACATCTCTA---AGACGTCGTGTGTTATCTGAGAAC---AGTATGGATCATCTGAC : 1223496 258 : sAsnCysIleThrIleHisAsnLysAlaLeuGlnPheTyrAsnIleLeuAsnGluS : 276 !::: !! :::...::: ...! !::!!:!! !.!.||||||.!...!| rSerIleAsnSerPheTyrTyrTyrValSerArgTyrCysGlnIleLeuGluArgS 1223495 : ATCAATTAActcattttattattacgttTCAAGATACTGCCAGATTCTGGAAAGAA : 1223439 277 : erSerArgAsnSerTyrLeuIleGlnValGlyLeuAsnMetMetGlyIleSerVal : 294 |||||!:!:!!! !|||||||||||||||||||||!:!:!!.!. !||||||||| erSerGlnHisMetTyrLeuIleGlnValGlyLeuSerValPheIleIleSerVal 1223438 : GTAGCCAACATATGTACCTGATTCAAGTAGGATTAAGCGTGTTCATCATCAGCGTG : 1223385 295 : ThrAlaValGln >>>> Target Intron 2 >>>> ThrValValAsnLeu : 303 ||||||!.! ! 656 bp !:!!:!!|||:!! ThrAlaAlaAla++ ++CysIleMetAsnIle 1223384 : ACGGCTGCCGCAgt.........................agTGCATTATGAACATC : 1222702 304 : AspArgProGluGluAlaIleArgThrAlaValPheLeuGlyAlaGluGlnPheHi : 322 |||||||||!!:||| !|||||| !|||:!!|||:!!! !|||::::::||||| AspArgProAspGluLeuIleArgLeuAlaMetPheValValAlaGlnLysPheHi 1222701 : GACCGACCTGACGAACTCATCAGGCTTGCGATGTTTGTCGTAGctcagaaatttca : 1222645 323 : sLeuPheValIleSerLeuProGlyGlnValLeuLeuAspHisCysThrGluLeuA : 341 ||||...:!!:!!|||||||||||||||:!!|||||||||||| !! !! !|||| sLeuLeuIleLeuSerLeuProGlyGlnMetLeuLeuAspHisSerLeuGlyLeuA 1222644 : tttgctcATCCTTAGTTTACCTGGGCAAATGTTGTTAGATCATAGTTTAGGATTGG : 1222588 342 : laAsnAsn{Il} >>>> Target Intron 3 >>>> {e}TyrSerSerThr : 348 ||:!!! {||} 71 bp {|}|||:!!|||! ! laAspIle{Il}++ ++{e}TyrAlaSerLys 1222587 : CCGATATA{AT}gt.........................ag{T}TACGCTTCTAAA : 1222496 349 : TrpTyrArgIleProValLysIleGlnLysValLeuHisMetMetGlnIleArgSe : 367 ||||||..!:!!||||||||| ||||||:!!:!!:!!! !||||||!!:||||| TrpTyrGluLeuProValLysGlyGlnLysLeuIleTyrThrMetGlnMetArgSe 1222495 : TGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTACACGATGCAAATGAGGTC : 1222439 368 : rLysLysProCysSerLeuThrAlaGlyGlyLeuTyrGluMetAsnMetGluAsnP : 386 |! !::!||||||! !|||||||||||||||:!!:!!|||||||||!!:|||!:!| rIleArgProCysIleLeuThrAlaGlyGlyValHisGluMetAsnIleGluSerP 1222438 : CATACGGCCATGTATATTAACAGCAGGAGGAGTGCATGAGATGAACATCGAGAGTT : 1222382 387 : heGlyIle : 388 |||||||| heGlyIle 1222381 : TCGGAATA : 1222374 vulgar: AmOr104 137 388 . KQ414851.1 1224300 1222373 - 485 M 91 273 S 0 2 5 0 2 I 0 449 3 0 2 S 1 1 M 12 36 G 1 0 M 8 24 G 1 0 M 47 141 5 0 2 I 0 652 3 0 2 M 45 135 S 0 2 5 0 2 I 0 67 3 0 2 S 1 1 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222374 1224300 485 - . gene_id 4 ; sequence AmOr104 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1224026 1224300 . - . KQ414851.1 exonerate:protein2genome:local exon 1224026 1224300 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1224024 1224025 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1223573 1224025 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1223573 1223574 . - . intron_id 0 ; splice_site "AC" KQ414851.1 exonerate:protein2genome:local cds 1223371 1223572 . - . KQ414851.1 exonerate:protein2genome:local exon 1223371 1223572 . - . insertions 0 ; deletions 2 KQ414851.1 exonerate:protein2genome:local splice5 1223369 1223370 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222715 1223370 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1222715 1222716 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222578 1222714 . - . KQ414851.1 exonerate:protein2genome:local exon 1222578 1222714 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1222576 1222577 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222507 1222577 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1222507 1222508 . - . intron_id 2 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222374 1222506 . - . KQ414851.1 exonerate:protein2genome:local exon 1222374 1222506 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222374 1224300 485 - . alignment_id 4 ; Query AmOr104 ; Align 1224301 138 273 ; Align 1223572 230 36 ; Align 1223536 243 24 ; Align 1223512 252 141 ; Align 1222715 299 135 ; Align 1222506 345 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr104 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 416 Query range: 101 -> 229 Target range: 1229734 -> 1229224 102 : PheLysLysLeuPheGluPheIleThrLysGluTrpGluLysPheGluLeuAsnAs : 120 |||:::|||::::::.....!:!:|||! !|||||||||:!!!!...!:!!|||:! PheArgLysMetTyrAsnLeuValThrIleGluTrpGluGlnLeuArgMetAsnAs 1229734 : tttagaaaaatgtataatctCGTGACAATAGAGTGGGAGCAGTTGAGGATGAACGA : 1229680 121 : nGlnPheHisValLeuGluGluIleThrIleLysGlySerLysMetAlaGlnLeuT : 139 !:!! ! |||||||||:!!|||:!!|||:!:||||||||||||:!!|||||||||| pGluValHisValLeuGlnGluValThrLeuLysGlySerLysLeuAlaGlnLeuT 1229679 : CGAGGTGCATGTGCTTCAAGAGGTTACTTTGAAAGGTAGTAAATTGGCCCAATTAT : 1229623 140 : yrArgAsnThrLeuLeuSerPhe{M} >>>> Target Intron 1 >>>> { : 147 |||||!:! !! !|||! !.!.{|} 126 bp { yrArgSerGluTyrLeuPheMet{M}-+ +-{ 1229622 : ACAGAAGTGAGTATCTTTTCATG{A}tt.........................aa{ : 1229472 148 : et}ValLeuPheLeuLeuValProLeuIlePheProPheLeuAspIleValHisPr : 165 ||} !:!!||||||||||||||||||.!! !||| !||||||||||||! !|| et}CysValPheLeuLeuValProLeuPheGlyProAlaLeuAspIleValLeuPr 1229471 : TG}TGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCGTCCTTCC : 1229419 166 : oLeuAsnGluThrArgProArgGlnGlnLeuPheArgValAsnTyrLeuIlePheA : 184 |! !||||||||||||||||||||||||||||||||||||||||||:!!||||||: oSerAsnGluThrArgProArgGlnGlnLeuPheArgValAsnTyrIleIlePheA 1229418 : ATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAATTTTCG : 1229362 185 : snHisAsnAspTyrPhePheTyrIleTyrLeuGlnLeuAlaTrpGlySerIleIle : 202 !!!!. |||||||||||||||:!:|||:!!|||||| !||| !!!!!|||:!! spGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPheTrpCysThrIleVal 1229361 : ACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACAATCGTT : 1229308 203 : ValValMetIleIleValThrValAspSerLeuTyrMetIleIleIleHisHisSe : 221 :!!|||||| !|||:!!||||||||||||||||||||||||||||||:!!|||:! LeuValMetAlaIleIleThrValAspSerLeuTyrMetIleIleIleTyrHisAl 1229307 : CTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGATCATAATTTACCATGC : 1229251 222 : rSerGlyMetPheAlaMetCysGly : 229 !|||||||||||||||!!:|||||| aSerGlyMetPheAlaIleCysGly 1229250 : CAGCGGAATGTTCGCTATATGCGGG : 1229225 vulgar: AmOr104 101 229 . KQ414851.1 1229734 1229224 - 416 M 45 135 S 0 1 5 0 2 I 0 122 3 0 2 S 1 2 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229734 416 - . gene_id 5 ; sequence AmOr104 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1229599 1229734 . - . KQ414851.1 exonerate:protein2genome:local exon 1229599 1229734 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1229597 1229598 . - . intron_id 1 ; splice_site "TT" KQ414851.1 exonerate:protein2genome:local intron 1229473 1229598 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1229473 1229474 . - . intron_id 0 ; splice_site "AA" KQ414851.1 exonerate:protein2genome:local cds 1229225 1229472 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229472 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229734 416 - . alignment_id 5 ; Query AmOr104 ; Align 1229735 102 135 ; Align 1229471 148 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr104 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 257 Query range: 101 -> 229 Target range: 1240295 -> 1239821 102 : PheLysLysLeuPheGluPheIleThrLysGluTrpGluLysPheGluLeuAsnAs : 120 ||||||...||| ! !:!:..!:!!:!!||||||:!!!!...!:!!!:!|| PheLysAsnLeuCysIleSerValValGluLysTrpGluGluLeuArgIleSerAs 1240295 : tttaaaaatttatgcattTCTGTGGTGGAAAAATGGGAAGAGTTGAGGATCAGTAA : 1240241 121 : nGlnPheHisValLeuGluGluIleThrIleLysGlySerLysMetAlaGlnLeuT : 139 |:!!!!. !||||||||||||:!!||| !:!!|||||||||......||||||| nGluLeuSerValLeuGluGluValThrAlaGlnGlySerLysPheValGlnLeuT 1240240 : CGAGTTAAGCGTGCTGGAAGAAGTTACCGCCCAAGGGAGcaaatttgtacaattgt : 1240184 140 : yrArgAsnThrLeuLeuSerPheMetValLeuPheLeu{L} >>>> Target I : 152 |||||!:! !! |||::: ||| |||{:} 90 yrArgSerGluTyrArgLeuPheLeuSerLeuArgLeu{M}-+ 1240183 : aCAGAAGCGAGTAtcgtttgtttctttcattaagactg{a}at............. : 1240142 153 : ntron 1 >>>> {eu}ValProLeuIlePheProPheLeuAspIleValHisPr : 165 bp {!!}||||||:::... |||...|||||||||:!! ! || -+{et}ValProIlePheProProLeuLeuAspIleLeuLysPr 1240141 : ............gg{TG}GTTCcgatttttcctcctcttctggACATTTTAAAACC : 1240016 166 : oLeuAsnGluThrArgProArgGlnGlnLeuPheArgValAsnTyrLeuIlePheA : 184 |||||||||||||||| !!||||||::::::|||:::|||||||||||||||.!!: oLeuAsnGluThrArgAlaArgGlnLysIlePheLysValAsnTyrLeuIleIleA 1240015 : TTTAAACGAAACCCGAGCACgccagaaaatattcaaagttaaTTACCTGATCATTG : 1239959 185 : snHisAsnAspTyrPhePheTyrIleTyrLeuGlnLeuAlaTrpGlySerIleIle : 202 !!...:!!!!: ! !.!. !! !|||!!!!!.|||:!!||| !!!!|||! ! spArgAspGluGlnAlaLeuIleThrTyrPheHisLeuSerTrpThrThrIleThr 1239958 : ACAGGGATGAACAAGCTCTGATCACATATTTTCACTTGTCTTGGACAACTATCACT : 1239905 203 : ValValMetIleIleValThrValAspSerLeuTyrMetIleIleIleHisHisSe : 221 :!!! !!!: !:!::!!!:! !!!:! !:!!|||:!::!!:!!|||||||||!! LeuGlyIleSerValLeuSerSerGluLeuIleTyrValLeuLeuIleHisHisTh 1239904 : CTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGTCCTTCTTATTCATCATAC : 1239848 222 : rSerGlyMetPheAlaMetCysGly : 229 !||||||:!!||||||:!!..!||| rSerGlyLeuPheAlaValAlaGly 1239847 : CAGCGGTCTGTTTGCTGTGGCTGgg : 1239822 vulgar: AmOr104 101 229 . KQ414851.1 1240295 1239821 - 257 M 50 150 S 0 1 5 0 2 I 0 86 3 0 2 S 1 2 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240295 257 - . gene_id 6 ; sequence AmOr104 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1240145 1240295 . - . KQ414851.1 exonerate:protein2genome:local exon 1240145 1240295 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1240143 1240144 . - . intron_id 1 ; splice_site "at" KQ414851.1 exonerate:protein2genome:local intron 1240055 1240144 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1240055 1240056 . - . intron_id 0 ; splice_site "gg" KQ414851.1 exonerate:protein2genome:local cds 1239822 1240054 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240054 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240295 257 - . alignment_id 6 ; Query AmOr104 ; Align 1240296 102 150 ; Align 1240053 153 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr104 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 178 Query range: 344 -> 386 Target range: 1228545 -> 1228419 345 : TyrSerSerThrTrpTyrArgIleProValLysIleGlnLysValLeuHisMetMe : 363 ||||||||||||||||||!:!:!! !!!.!|||.!!|||::!|||:!!:!!||||| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 364 : tGlnIleArgSerLysLysProCysSerLeuThrAlaGlyGlyLeuTyrGluMetA : 382 ||||||||||:!! !|||||||||! !|||||||||||||||||||||||||||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 383 : snMetGluAsnPhe : 386 |||||||||||||| snMetGluAsnPhe 1228433 : ACATGGAGAACTTT : 1228420 vulgar: AmOr104 344 386 . KQ414851.1 1228545 1228419 - 178 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228420 1228545 178 - . gene_id 7 ; sequence AmOr104 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228420 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228420 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228420 1228545 178 - . alignment_id 7 ; Query AmOr104 ; Align 1228546 345 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr104 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 167 Query range: 295 -> 345 Target range: 1228764 -> 1228614 296 : AlaValGlnThrValValAsnLeuAspArgProGluGluAlaIleArgThrAlaVa : 314 :!! !!|||! !:!!:!! !||||||||||||...|||||||||||| !:!!|| SerPheGlnIleMetLeuAlaLeuAspArgProSerGluAlaIleArgTyrSerVa 1228764 : TCTTTCCAGATAATGCTCGCCCTGGATAGACCGAGCGAAGCTATTAGATATTCTGT : 1228710 315 : lPheLeuGlyAlaGluGlnPheHisLeuPheValIleSerLeuProGlyGlnValL : 333 | !!||||||!.!! !|||||||||||||||:!!||||||||||||||||||..!| lValLeuGlyGlyAlaGlnPheHisLeuPheIleIleSerLeuProGlyGlnThrL 1228709 : GGTTCTTGGAGGTGCGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACAC : 1228653 334 : euLeuAspHisCysThrGluLeuAlaAsnAsnIleTyr : 345 ||:!!|||||||||||| !|||.!!|||:!!!!:||| euValAspHisCysThrMetLeuThrAsnAspMetTyr 1228652 : TCGTGGATCATTGTACCATGCTAACGAACGATATGTAC : 1228615 vulgar: AmOr104 295 345 . KQ414851.1 1228764 1228614 - 167 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228615 1228764 167 - . gene_id 8 ; sequence AmOr104 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228615 1228764 . - . KQ414851.1 exonerate:protein2genome:local exon 1228615 1228764 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228615 1228764 167 - . alignment_id 8 ; Query AmOr104 ; Align 1228765 296 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr104 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 155 Query range: 297 -> 344 Target range: 1238825 -> 1238684 298 : GlnThrValValAsnLeuAspArgProGluGluAlaIleArgThrAlaValPheLe : 316 |||||||||! !|||:!!||| !||| !! !|||:!:|||!.!|||..! !!! GlnThrValGlyAsnIleAspAspProThrValAlaLeuArgAsnAlaThrValTr 1238825 : CAGACAGTGGGGAATATAGACGATCCGACAGTAGCTTTGAGAAACGCTACGGTCTG : 1238771 317 : uGlyAlaGluGlnPheHisLeuPheValIleSerLeuProGlyGlnValLeuLeuA : 335 !||||||:!!|||.!!|||||||||:!!||||||:!!|||||||||||||||:!!| pGlyAlaLysGlnIleHisLeuPheIleIleSerIleProGlyGlnValLeuIleA 1238770 : GGGGGCTAAGCAAATTCACCTGTTCATCATCAGTATACCTGGACAGGTGCTTATAG : 1238714 336 : spHisCysThrGluLeuAlaAsnAsnIle : 344 ||||||||..!||||||:!!|||:!!!!: spHisCysValGluLeuSerAsnAspMet 1238713 : ATCATTGTGTGGAGCTGTCAAACGACATG : 1238685 vulgar: AmOr104 297 344 . KQ414851.1 1238825 1238684 - 155 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1238685 1238825 155 - . gene_id 9 ; sequence AmOr104 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1238685 1238825 . - . KQ414851.1 exonerate:protein2genome:local exon 1238685 1238825 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1238685 1238825 155 - . alignment_id 9 ; Query AmOr104 ; Align 1238826 298 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr104 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 60 -> 106 Target range: 1229932 -> 1229794 61 : LeuGluLeuTyrThrSerLeuArgAspLysAsnMetAspAlaValIleGluCysLe : 79 :!!|||:!!|||..!..!|||||| ! ||||||||||||! !:!!!!:||| !!!! IleGluMetTyrValGlnLeuArgLysLysAsnMetAspAspMetMetGluSerPh 1229932 : ATCGAGATGTATGTGCAATTGCGTAAGAAGAATATGGACGATATGATGGAGAGTTT : 1229878 80 : uProHisLeuIleAlaAlaAlaThrSerValValLysLeuLeuAsnIleHisPheA : 98 ! !!:!! !||||||||||||||||||:!!|||||||||||||||:!!:!!!!.| eAlaAsnThrIleAlaAlaAlaThrSerLeuValLysLeuLeuAsnValTyrLeuA 1229877 : TGCGAATACTATTGCTGCCGCGACCAGCCTGGTGAAATTGTTGAACGTTTACTTAA : 1229821 99 : snArgGluAsnPheLysLysLeuPhe : 106 ||||||||||| ! ::: !!!||| snArgGluAsnValArgAlaPhePhe 1229820 : ACAGGGAAAATGTACGTGCCTTCTTT : 1229795 vulgar: AmOr104 60 106 . KQ414851.1 1229932 1229794 - 131 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229795 1229932 131 - . gene_id 10 ; sequence AmOr104 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229795 1229932 . - . KQ414851.1 exonerate:protein2genome:local exon 1229795 1229932 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229795 1229932 131 - . alignment_id 10 ; Query AmOr104 ; Align 1229933 61 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr104 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 267 -> 298 Target range: 1228927 -> 1228834 268 : GlnPheTyrAsnIleLeuAsnGluSerSerArgAsnSerTyrLeuIleGlnValGl : 286 ::!||||||:!!|||||||||||||||||||||||||||||||||:!!|||||||| ArgPheTyrAspIleLeuAsnGluSerSerArgAsnSerTyrLeuLeuGlnValGl 1228927 : AGGTTTTACGATATTCTAAACGAGAGCAGTCGAAACAGCTACTTGCTTCAGGTTGG : 1228873 287 : yLeuAsnMetMetGlyIleSerValThrAlaValGln : 298 ||||!:!||||||.!!||||||||||||||||||||| yLeuSerMetMetSerIleSerValThrAlaValGln 1228872 : ATTGAGCATGATGAGCATCAGCGTGACTGCTGTGCAG : 1228835 vulgar: AmOr104 267 298 . KQ414851.1 1228927 1228834 - 130 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228835 1228927 130 - . gene_id 11 ; sequence AmOr104 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228835 1228927 . - . KQ414851.1 exonerate:protein2genome:local exon 1228835 1228927 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228835 1228927 130 - . alignment_id 11 ; Query AmOr104 ; Align 1228928 268 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 135 -> 217 Target range: 1224270 -> 1224024 136 : LeuLeuPheLeuGlnValProTrpThrAlaArgLeuLeuTyrMetIleLysSerGl : 154 |||:!!!:!:!!... !!|||! !! ! !! !:!!||| !!:!::!! ! !! LeuValTyrMetSerPheProLeuIleAsnProValLeuAspValValAlaProLe 1224270 : TTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTT : 1224216 155 : nAsnThrSerProProMetLeuTyrValIleProGlyTyrTyrPheValAspAspA : 173 !||| !!!!! !||| ! !:!!:!!|||! ! !|||.!. !! |||! uAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleAspG 1224215 : AAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACG : 1224159 174 : spArgAspTyrTyrTyrPheIleGlnLeuHisMetSerLeuSerIleIleMetVal : 191 !: !!!::!!!:!||| !:!:.!.!!!|||:!:! ! !|||:!:||| ! luTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSerCys 1224158 : AGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGC : 1224105 192 : AlaAsnValTyrValAlaTyrAspThrCysTyrMetValPheValGlnHisValCy : 210 !.!! :!! :!!||| |||! !! |||!!:..!.!!:!! |||:!!|| GlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCy 1224104 : GGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTG : 1224048 211 : sGlyLeuLeuAlaValAlaGly : 217 |||||||!!!||||||..!||| sGlyLeuPheAlaValCysGly 1224047 : CGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: AmOr113 135 217 . KQ414851.1 1224270 1224024 - 121 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224270 121 - . gene_id 1 ; sequence AmOr113 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224270 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224270 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224270 121 - . alignment_id 1 ; Query AmOr113 ; Align 1224271 136 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 330 -> 375 Target range: 1228545 -> 1228410 331 : TyrGluAlaSerTrpTyrAsnIleAsnProLysIleGlnAlaLeuTyrIleLeuAl : 349 |||...:!!!!!||||||!!.:!!::: !!|||.!!||| !:!! ! !:!! TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 350 : aLeuArgArgSerLeuThrProProArgLeuThrAlaGlyGlyLeuIleGluLeuA : 368 !! !! !|||:!!|||! !||| !! !|||||||||||||||||| !|||:!!| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 369 : snMetGlnSerPheSerGluVal : 375 |||||:!!!:!|||:!!.!.||| snMetGluAsnPheAlaAsnVal 1228433 : ACATGGAGAACTTTGCAAACGTT : 1228411 vulgar: AmOr113 330 375 . KQ414851.1 1228545 1228410 - 104 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1228545 104 - . gene_id 2 ; sequence AmOr113 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228411 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1228545 104 - . alignment_id 2 ; Query AmOr113 ; Align 1228546 331 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 165 Query range: 120 -> 216 Target range: 1243887 -> 1243599 121 : ThrThrLeuCysIlePheTyrGluValIleValIlePheSerAlaIleMetPheIl : 139 :::|||::: :!!! ! !..!! !! !:!!.!!!:!! !:!!|||!!:|||:! SerThrIleLeuValSerLeuSerGlyThrLeuPheTyrPheSerIleIlePheVa 1243887 : tcgactatactcGTCTCTCTTTCAGGTACTTTGTTCTATTTCTCGATAATATTCGT : 1243833 140 : eMetIleProThrIleProProIleLeuAsnIleIleMetProLeuAsnGluSerA : 158 !:!:.!!||| !|||||||||||||||:!!:!!:!! ||||||||||||!!!| lLeuPheProLeuIleProProIleLeuAspValValSerProLeuAsnGluThrA 1243832 : ATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGAGACTC : 1243776 159 : rgAspArgGluPheIleTyrProThrTyrPhePheIleAspGluGluLysTyrTyr : 176 ||..!||| ! ::: :::.!..!!||| |||||| ::: rgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspMetGluLysAsnPhe 1243775 : GATCTCGGATAGaagtaataaaattgcaataccTGTTCGACAtggagaagaatttt : 1243722 177 : TyrProIleLeuThrTyrMetAlaThrValIleLeuIleValSerSerValTyrLe : 195 ||| ::: ..!|||! !.! ! ! !!!!!:..!! !! !||| :! TyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMetValIleIl 1243721 : tattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAAT : 1243665 196 : uAlaCysAspThrAsnLeuValGlnIleValHisHisGlyCysAlaLeuLeuAlaI : 214 !.!! |||.!! ! !||| !|||:!!|||||| !|||!.!|||!!!|||: eThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGlyLeuPheAlaV 1243664 : CACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCTG : 1243608 215 : leSerGly : 216 !!!!!||| alCysGly 1243607 : TTTGCGGG : 1243600 vulgar: AmOr108 120 216 . KQ414851.1 1243887 1243599 - 165 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243887 165 - . gene_id 1 ; sequence AmOr108 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243887 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243887 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243887 165 - . alignment_id 1 ; Query AmOr108 ; Align 1243888 121 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 142 Query range: 135 -> 216 Target range: 1224270 -> 1224024 136 : IleMetPheIleMetIleProThrIleProProIleLeuAsnIleIleMetProLe : 154 :!!:!:!:!!!:! .!!||| !||| !|||:!!|||:!!:!!:!! !||||| LeuValTyrMetSerPheProLeuIleAsnProValLeuAspValValAlaProLe 1224270 : TTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTT : 1224216 155 : uAsnGluSerArgAspArgGluPheIleTyrPro<->ThrTyrPhePheIleAspG : 172 |||||||!!!||| !|||..!.!!:!: !||| !:!|||.!.|||||||||| uAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleAspG 1224215 : AAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACG : 1224159 173 : luGluLysTyrTyrTyrProIleLeuThrTyrMetAlaThrValIleLeuIleVal : 190 || ! :!!:!!!:!||| !:!: ! !:!!:!: !||| !:!::!! ! ! luTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSerCys 1224158 : AGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGC : 1224105 191 : SerSerValTyrLeuAlaCysAspThrAsnLeuValGlnIleValHisHisGlyCy : 209 .!!! !:!! :!!||| |||! ! ! !:!! |||:!! !||| !|| GlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCy 1224104 : GGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTG : 1224048 210 : sAlaLeuLeuAlaIleSerGly : 216 |!.!|||!!!|||:!:!!!||| sGlyLeuPheAlaValCysGly 1224047 : CGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: AmOr108 135 216 . KQ414851.1 1224270 1224024 - 142 M 30 90 G 0 3 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224270 142 - . gene_id 2 ; sequence AmOr108 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224270 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224270 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224270 142 - . alignment_id 2 ; Query AmOr108 ; Align 1224271 136 90 ; Align 1224178 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 134 Query range: 124 -> 221 Target range: 1240103 -> 1239806 125 : IlePheTyrGluValIleValIlePheSerAlaIle<->MetPheIleMetIlePr : 142 |||!:!||| !:!!|||:!!||||||...::: :::|||::::!!:!!|| IleTyrTyrIleSerValValLeuPheSerValLeuPheIlePheLeuValValPr 1240103 : ATATATTACATTTCAGTCGTTTTATTTTCcgttttgttcatttttctggTGGTTCc : 1240049 143 : oThrIleProProIleLeuAsnIleIleMetProLeuAsnGluSerArgAspArgG : 161 | ...||||||:::|||:!!|||:!!! ||||||||||||!!!|||! |||: oIlePheProProLeuLeuAspIleLeuLysProLeuAsnGluThrArgAlaArgG 1240048 : gatttttcctcctcttctggACATTTTAAAACCTTTAAACGAAACCCGAGCACgcc : 1239992 162 : luPheIleTyrPro<->ThrTyrPhePheIleAspGluGluLysTyrTyrTyrPro : 178 :: |||::: ..!|||.!..!!||||||..!!!::!! ! ! ! lnLysIlePheLysValAsnTyrLeuIleIleAspArgAspGluGlnAlaLeuIle 1239991 : agaaaatattcaaagttaaTTACCTGATCATTGACAGGGATGAACAAGCTCTGATC : 1239938 179 : IleLeuThrTyrMetAlaThrValIleLeuIleValSerSerValTyrLeuAlaCy : 197 ! !! ! !:!!:!!:!! !..!! !:!!! !:!!.!!! ! ! |||::!! ThrTyrPheHisLeuSerTrpThrThrIleThrLeuGlyIleSerValLeuSerSe 1239937 : ACATATTTTCACTTGTCTTGGACAACTATCACTCTTGGGATATCTGTGCTTAGCTC : 1239881 198 : sAspThrAsnLeuValGlnIleValHisHisGlyCysAlaLeuLeuAlaIleSerG : 216 !!: !! ! !|||! :!!:!!|||||| ! !!!.!|||!!!|||:!::!!| rGluLeuIleTyrValLeuLeuIleHisHisThrSerGlyLeuPheAlaValAlaG 1239880 : AGAATTGATATACGTCCTTCTTATTCATCATACCAGCGGTCTGTTTGCTGTGGCTG : 1239824 217 : lyTyrHisPheLysHis : 221 || ||||||||| ly***IlePheLysHis 1239823 : ggtaaatattcaaacat : 1239807 vulgar: AmOr108 124 221 . KQ414851.1 1240103 1239806 - 134 M 12 36 G 0 3 M 29 87 G 0 3 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239807 1240103 134 - . gene_id 3 ; sequence AmOr108 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239807 1240103 . - . KQ414851.1 exonerate:protein2genome:local exon 1239807 1240103 . - . insertions 6 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239807 1240103 134 - . alignment_id 3 ; Query AmOr108 ; Align 1240104 125 36 ; Align 1240065 137 87 ; Align 1239975 166 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 133 Query range: 124 -> 216 Target range: 1234338 -> 1234059 125 : IlePheTyrGluValIleValIlePheSerAlaIleMetPheIleMetIleProTh : 143 :!:|||!:!..!! !! !:!!:!:! !! ! !:!!:!:|||:!::!!:!!||| ValPhePheSerAspThrLeuLeuSerPheMetValValPheLeuLeuValProLe 1234338 : GTGTTCTTCTCAGATACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATT : 1234284 144 : rIleProProIleLeuAsnIleIleMetProLeuAsnGluSerArgAspArgGluP : 162 !:!! !|||.!!|||:!!:!!:!!:!:||||||||||||!!!||| |||:!! uValPheProPheLeuAspValValLeuProLeuAsnGluThrArgProArgGlnG 1234283 : AGTTTTTCCATTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGC : 1234227 163 : heIleTyr<->ProThrTyrPhePheIleAspGluGluLysTyrTyrTyrProIle : 179 !!:! !!.!|||.!.!:!.!!||||||! ! ! |||!:!!:! !:!: lnGlyPheArgValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSerVal 1234226 : AAGGATTCAGAGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTG : 1234173 180 : LeuThrTyrMetAlaThrValIleLeuIleValSerSerValTyrLeuAlaCysAs : 198 ! ! ! ! :!!||| !! ! !:!!:!!||| !! !:!! :!!.!! || TyrPheGlnLeuAlaTrpGlyAlaValValValValMetIleIleIleThrValAs 1234172 : TACTTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGA : 1234116 199 : pThrAsnLeuValGlnIleValHisHisGlyCysAlaLeuLeuAlaIleSerGly : 216 |:!! ! !:!! !|||:!!||||||!.! !!!.!:!!!!!|||:!:!!!||| pSerLeuTyrMetIleIleIleHisHisAlaSerGlyMetPheAlaValCysGly 1234115 : CTCGTTGTACATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTGTGCGGG : 1234060 vulgar: AmOr108 124 216 . KQ414851.1 1234338 1234059 - 133 M 40 120 G 0 3 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234338 133 - . gene_id 4 ; sequence AmOr108 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234338 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234338 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234338 133 - . alignment_id 4 ; Query AmOr108 ; Align 1234339 125 120 ; Align 1234216 165 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr115 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 300 -> 378 Target range: 234839 -> 235147 301 : PheIleIleHisValIleTyrThrMetLeuHisLeuPheIleTyrCysTyrValGlyG : 320 !:!:!!||| !:!:! !! !! !!.::::::||||||:::||||||:!!|||| TyrValIleValTyrValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyG 234840 : TACGTCATCGTGTACGTGTCCATGACATTtaatatattcatattttgttACATCGGAG : 234897 321 : luThrLeuLeuGlyGln >>>> Target Intron 1 >>>> SerThrGlyIle : 329 |||||||| !! !||| 74 bp !!!||| !:!! luThrLeuThrGluGln++ ++CysThrLysVal 234898 : AGACGCTTACAGAGCAGgt.........................agTGTACCAAAGTC : 234998 330 : GlyLeuSerThrTyrHisCysAsnTrpTyrAspLeuProSerArgArgAlaValLeuL : 349 ||| !!.!..!||| !.!.|||||| |||||| !!:!! !|||:!! !| GlyGluLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyL 234999 : GGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTT : 235058 350 : euMetIleValIleArgArgAlaAsnValSerPheGlnIleThrAlaGlyLysPheSe : 368 ||:!:!!::!!||| !|||:!!!:!:!! !.!.:!!|||||||||||||||||| euValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheLe 235059 : TGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCT : 235115 369 : rProPheSerLeuGluPhePheAsnAlaVal : 378 !! !.!.|||:!!! ! |||..!! !||| uGlnMetSerValAlaThrPheGlyAspVal 235116 : ACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: AmOr115 300 378 . KQ414889.1 234839 235147 + 139 M 25 75 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234840 235147 139 + . gene_id 1 ; sequence AmOr115 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234840 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234840 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234840 235147 139 + . alignment_id 1 ; Query AmOr115 ; Align 234840 301 75 ; Align 234989 326 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr115 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 1 -> 250 Target range: 266634 -> 267390 2 : AspPheAlaMetGlyTrpAsnArgPheAsnLeuThrLeuLeuGlyValTyrProGluP : 21 |||!:!::!:!! !! !||||||!:: !|||! !! !:!!|||!.!!::||| ! AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProL 266635 : GATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGT : 266692 22 : roArgLysMetSerArgAsnSerArgLeuMetSerSerLeuIlePheTrpPheThrTh : 40 ! ! ! |||!:! !..!|||:!!:!:|||! ! !:!:.!! !!! ! euSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIle---ValIleCy 266693 : TGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATC---GTCATCTG : 266746 41 : rLeuValThrPheThrPheIleCysAlaProGlnThrAlaAsnLeuIleLeuLysSer : 59 !! ! !:!!.!. !|||! ! !||| ! !:!!|||:!!|||:!!..! sTyrCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAsp 266747 : CTACTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGAC : 266803 60 : ThrSerLeuAspGluValIleGluAsnLeuSerIleAsnIleProIleValPheAlaL : 79 !|||:!! ! ! !:!::!! !!!.!! ! ! !! ! !! !!!.! GluSerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyG 266804 : GAGAGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAG : 266863 80 : euIleLysGlnIleValLeuArgTyrTyrLysLysAlaLeuThrGluLeuLeuGlyGl : 98 !|||!!. ! ! !..!||| ! !!..|||! !:!! !! ! !:!!! !.! lyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHi 266864 : GAATTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCA : 266920 99 : uMetLeuAlaAspTrpSerGlyProIleGlyAspGlnAspArgGluThrMetLeuArg : 117 .|||! !.!!||||||!!! ! !! ! !! :!!|||!:!:!!..!||||||!:! sMetGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLys 266921 : CATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAG : 266977 118 : AsnAlaArgLeuSerArgAlaIleSerIleValCysSerThrLeuThrTyrPheMetL : 137 |||||||||:!!.!!||| !|||:!!||| !!|||:!!.!!!!!! ! ! ! ! : AsnAlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyV 266978 : AACGCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTG : 267037 138 : euLeuAlaPheValSerLeuGlnValTrpSer<-><->AsnAlaGluAsnAlaSerGl : 154 !!|||!.!!:! ! !:!! !!.!!::!!! !.!!.!||| !!.!!:!|| alLeuGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGl 267038 : TTCTCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGA : 267094 155 : uThrAspLeuGlyGlyLeuLeuHisProAlaThrPhePro<-><->TyrGluThrSer : 171 |||| :!!! ! !||||||! ! !|||..!!:! ! !! !..!..! uThrArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAsp 267095 : GACTAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGAT : 267151 172 : LysSerProAsnTyrGluIleThrTrpLeuGlyGlnLeuMetGlyThrValLeuThrA : 191 ! ||||||!.. !!||||||..! :!!..!|||!!!:!:..! ! !!:!!..! ThrSerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValA 267152 : ACCAGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGA : 267211 192 : laIleCysTyrSerCysPheAspThrPheLeuAlaValLeuValLeuHisLeuCysGl : 210 ! !! ! ! !! ! !!:!.!! !||||||!!!!.! !||| !||||| snSerSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGl 267212 : ATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGG : 267268 211 : yGlnLeuThrValLeuGlyThrAlaLeuGluAspLeuValAsnAlaThrArgArgAsn : 229 |||||||!:!|||||| !! ! !:!!:!!!!:!!!|||||| !:!!||| !!:! yGlnLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSer 267269 : ACAGCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGC : 267325 230 : AspTyrLysThrPheGluGlnArgLeuSerSerIleValAsnArgHisAsnHisLeuS : 249 :!! ! !!...!! ! .!.!:!:!!.!! !:!!|||.!.!.!||| ...:!!! AsnLysAsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValL 267326 : AATAAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTT : 267385 250 : erArg : 250 !||| euArg 267386 : TGAGG : 267390 vulgar: AmOr115 1 250 . KQ414889.1 266634 267390 + 128 M 35 105 G 1 0 M 110 330 G 0 6 M 20 60 G 0 6 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266635 267390 128 + . gene_id 2 ; sequence AmOr115 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266635 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266635 267390 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 266635 267390 128 + . alignment_id 2 ; Query AmOr115 ; Align 266635 2 105 ; Align 266740 38 330 ; Align 267076 148 60 ; Align 267142 168 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr115 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 168 -> 378 Target range: 257159 -> 258624 169 : GluThrSerLysSerProAsnTyrGluIleThrTrpLeuGlyGlnLeuMetGlyThrV : 188 .!...!..!:!!||||||!.. !!||||||..! !!! !||| ! !..!:!!: AsnValAspGlnSerProThrAsnGluIleValValPheMetGlnThrTrpSerSerI 257160 : AACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGA : 257217 189 : alLeuThrAlaIleCysTyrSerCysPheAspThrPheLeuAlaValLeuValLeuHi : 207 !!:!!.!!.!!! ! !! ! !!.!. !!:!.!! !||||||!!!!.! !|| leIleAlaThrThrSerThrValSerIlePheSerLeuAlaAlaValPheAlaThrHi 257218 : TTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCA : 257274 208 : sLeuCysGlyGlnLeuThrValLeuGlyThrAlaLeuGluAspLeuValAsnAlaThr : 226 | !! !|||||||||||||||||| !:!! !:!! !!!:!!!||||||! !:!! sAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGluPheValAsnGluSer 257275 : TGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCG : 257331 227 : ArgArgAsnAspTyrLysThrPheGluGlnArgLeuSerSerIleValAsnArgHisA : 246 |||!.!...::: :!!!:!:!!.!! !||||||.!.!.!||| ArgAsnArgGluLysThrPheProPheLysGlnIleGlyValIleValGluHisHisL 257332 : AGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATT : 257391 247 : snHisLeuSer{Ar} >>>> Target Intron 1 >>>> {g}PheAlaValIl : 254 ...:!! !{!!} 832 bp {!}::::::||||| euArgValLeu{Se}++ ++{r}TyrSerValIl 257392 : TAAGAGTGCTG{AG}gt.........................ag{c}tattctgttat : 258247 255 : eValGluAspCysPheAsn<->IleThrLeuLeuValGlnThrLeuIleCysThrAla : 272 | ... !|||! :::|||...||| ! ! ePheTyrTyrPheGlnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPhe 258248 : tttttattattttcaggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTT : 258304 273 : MetPheCysLeuThrGlyTyrArgMetIleThrSerValAspArgGluAspGluAlaA : 292 |||.!. !:!!::: ||| ::: ! !! !||| ! MetIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleL 258305 : ATGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATAT : 258364 293 : spValProIleValGlyIleIlePhePheIleIleHisValIleTyrThrMetLeuHi : 311 ..! ! ||| ||| ...|||::: !:!!:!!! ! ! euThrGluGlnValProGluIle***LeuIleValThrTyrValHisLysTrpAsnLe 258365 : TAACAGAACAGGTACCagagatttaattaattgtcaCATATGTACACAAATGGaactt : 258421 312 : sLeuPheIleTyrCysTyrValGlyGluThrLeuLeuGlyGlnSerThrGlyIleGly : 330 ||| ..!..!:!!||| !! ! !|||!!!! ! !:!!||| u***LysIleSerValArgThrAsnGlnThrAsnCys***GlnCysLysLysValGly 258422 : gtgaaaaatttcagtaagGACTAATCAAACGAATTGTTAACAGTGCAAGAAAGTTGGC : 258478 331 : LeuSerThrTyrHisCysAsnTrpTyrAspLeuProSerArgArgAlaValLeuLeuM : 350 ! !..!||| :!!|||||| !!||||||..!!:!||| !:!! !|||! AspValValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuI 258479 : GACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAA : 258538 351 : etIleValIleArgArgAlaAsnValSerPheGlnIleThrAlaGlyLysPheSerPr : 369 !::!:|||||| !|||:!!!:!||| ! !!||||||||||||||||||||| leLeuValIleAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePheHi 258539 : TTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttca : 258595 370 : oPheSerLeuGluPhePheAsnAlaVal : 378 ...|||:!! ! |||!:!! !||| sMetSerIleTyrThrPheSerAspVal 258596 : catGTCCATTTACACATTCAGCGATGTG : 258624 vulgar: AmOr115 168 378 . KQ414889.1 257159 258624 + 125 M 81 243 S 0 2 5 0 2 I 0 828 3 0 2 S 1 1 M 10 30 G 0 3 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 257160 258624 125 + . gene_id 3 ; sequence AmOr115 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 257160 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 257160 257404 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 258236 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258235 258236 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258237 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258237 258624 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 257160 258624 125 + . alignment_id 3 ; Query AmOr115 ; Align 257160 169 243 ; Align 258238 251 30 ; Align 258271 261 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr115 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 324 -> 382 Target range: 254271 -> 254445 325 : GlnSerThrGlyIleGlyLeuSerThrTyrHisCysAsnTrpTyrAspLeuProSerA : 344 |||!!! ! !:!!||| ! !..!||| :!!|||||| !!||||||..!| GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 345 : rgArgAlaValLeuLeuMetIleValIleArgArgAlaAsnValSerPheGlnIleTh : 363 ||||| !:!! !|||!!::!::!!|||! !|||:!!|||||| ! !!:!!||||| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 364 : rAlaGlyLysPheSerProPheSerLeuGluPhePheAsnAlaValLeuLysThrSer : 382 ||||||||||... ...|||||| ! |||..!! !||| !:!!|||!:! rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 254443 vulgar: AmOr115 324 382 . KQ414889.1 254271 254445 + 107 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254445 107 + . gene_id 4 ; sequence AmOr115 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254445 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254445 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254445 107 + . alignment_id 4 ; Query AmOr115 ; Align 254272 325 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr115 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 324 -> 381 Target range: 244655 -> 244826 325 : GlnSerThrGlyIleGlyLeuSerThrTyrHisCysAsnTrpTyrAspLeuProSerA : 344 |||!!! ! !:!!||| ! !..!||| :!!|||||| !!||||||..!| GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 345 : rgArgAlaValLeuLeuMetIleValIleArgArgAlaAsnValSerPheGlnIleTh : 363 ||||| !:!! !|||!!::!::!!|||!:!|||:!!|||:!! ! !!:!!||||| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 364 : rAlaGlyLysPheSerProPheSerLeuGluPhePheAsnAlaValLeuLysThr : 381 |||||||||| ! ! !! !.!.|||||| ! |||..!! !||| !:!!||| rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThr 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 244826 vulgar: AmOr115 324 381 . KQ414889.1 244655 244826 + 105 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244826 105 + . gene_id 5 ; sequence AmOr115 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244826 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244826 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244826 105 + . alignment_id 5 ; Query AmOr115 ; Align 244656 325 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr115 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 328 -> 385 Target range: 280285 -> 280456 329 : IleGlyLeuSerThrTyrHisCysAsnTrpTyrAspLeuProSerArgArgAlaValL : 348 :!!|||:!!||||||||| !:!!|||||| !||||||.!!!:!!:!||| ! ValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnG 280286 : GTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAG : 280343 349 : euLeuMetIleValIleArgArgAlaAsnValSerPheGlnIleThrAlaGlyLysPh : 367 !|||!!::!::!!.!! ! !:!!||| !|||.!.:!!:!!||||||||||||.! lyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIl 280344 : GTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGAT : 280400 368 : eSerProPheSerLeuGluPhePheAsnAlaValLeuLysThrSerAlaGlyTyr : 385 !! ! !.!!||||||... !||| !::!||| !! ! !!:! !..!||| eIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 280401 : CATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 280456 vulgar: AmOr115 328 385 . KQ414889.1 280285 280456 + 103 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280286 280456 103 + . gene_id 6 ; sequence AmOr115 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280286 280456 . + . KQ414889.1 exonerate:protein2genome:local exon 280286 280456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280286 280456 103 + . alignment_id 6 ; Query AmOr115 ; Align 280286 329 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr115 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 328 -> 385 Target range: 287072 -> 287243 329 : IleGlyLeuSerThrTyrHisCysAsnTrpTyrAspLeuProSerArgArgAlaValL : 348 :!!||||||||||||||| !:!!|||||| !||||||.!!!:!! !||| ! ValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnG 287073 : GTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAG : 287130 349 : euLeuMetIleValIleArgArgAlaAsnValSerPheGlnIleThrAlaGlyLysPh : 367 !|||!!::!::!!.!! ! !:!!||| !|||.!.:!!:!!||||||||||||.! lyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIl 287131 : GTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGAT : 287187 368 : eSerProPheSerLeuGluPhePheAsnAlaValLeuLysThrSerAlaGlyTyr : 385 !! ! !.!!||||||... !||| !::!||| !! ! !!:! !..!||| eIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 287188 : CATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 287243 vulgar: AmOr115 328 385 . KQ414889.1 287072 287243 + 103 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287073 287243 103 + . gene_id 7 ; sequence AmOr115 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287073 287243 . + . KQ414889.1 exonerate:protein2genome:local exon 287073 287243 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287073 287243 103 + . alignment_id 7 ; Query AmOr115 ; Align 287073 329 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 320 -> 375 Target range: 301871 -> 302036 321 : AspSerCysAsnGluIleTyrTyrSerIleTyrGluAlaSerTrpTyrAsnIleAsnP : 340 |||! !|||!:!:!!||| !! :!! |||||| !..!|||||||||:!! Asp***CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProA 301872 : GATTAGTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAG : 301929 341 : roLysIleGlnAlaLeuTyrIleLeuAlaLeuArgArgSerLeuThrProProArgLe : 359 !!|||! ! ! ! ! !|||||| ! ! !! !|||! ! !||||||!:!|| laLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLe 301930 : CGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACT : 301986 360 : uThrAlaGlyGlyLeuIleGluLeuAsnMetGlnSerPheSerGluVal : 375 |||||||||| !:!!|||!!:|||::!:!!.!.!!!||||||...||| uThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301987 : TACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: AmOr113 320 375 . KQ414889.1 301871 302036 + 102 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301872 302036 102 + . gene_id 1 ; sequence AmOr113 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301872 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301872 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301872 302036 102 + . alignment_id 1 ; Query AmOr113 ; Align 301872 321 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr93PSE Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 630 Query range: 3 -> 380 Target range: 1710224 -> 1713339 4 : LeuGluSerAspValSerUnkIlePheMetLysLeuValGlyIleTrpMetAlaGl : 22 |||! ! !..!|||!!!...!!:|||:!!|||:!!:!!|||:!:||||||||| LeuGlyPheSerValThrSerMetPheValLysMetIleGlyLeuTrpMetAlaLy 1710225 : TTAGGTTTCAGCGTGACTTCGATGTTCGTGAAAATGATCGGATTGTGGATGGCGAA : 1710279 23 : yAsnGlyZedGluUnkIleThrLeuPheThrAlaIleIlePheSerGlyTyrAsnL : 41 !||| ! ||| !..! ! !..!.!!:!:.!!!:!::: ::: : sAsnGlnPheGluGlnHisValArgAsnValThrLeuPheTyrThrPhePhePheV 1710280 : AAATCAGTTCGAGCAACATGTCAGAAACGTGACGTTGTTCTACacattcttcttcg : 1710336 42 : euZedMetTyrPheIleLeuGlyAspPheSer >>>> Target Intron 1 > : 52 ::...... ||| !:!!! !! ! !:! 495 bp alSerPheGlyPheTyrValGluAlaThrAsn-+ 1710337 : tttccttcGGATTCTACGTGGAAGCTACGAACct...................... : 1710371 53 : >>> AlaCysLeuPhePheIleSerIleIleLeuSerSerIleMetLeuLeuLeu : 68 ! ! |||||| !|||!!!! !:!!|||||| !||||||! ! !:!! ++AspThrLeuPheAspIleCysThrLeuLeuSerValIleMetProAlaIle 1710372 : ...agGACACACTGTTCGACATATGCACTCTTCTGTCGGTGATAATGCCCGCTATC : 1710912 69 : LysIleIleIleLeuPheSerHisArgGluAspPhePheHisLeuIleLeuTyrMe : 87 ||||||||||||||||||! !:!!!:!|||!!:||||||!.!||||||:!!|||! LysIleIleIleLeuPheIleAsnLysGluGluPhePheArgLeuIleValTyrTh 1710913 : AAAATAATCATCCTGTTTATCAACAAGGAGGAGTTTTTCCGTTTGATCGTGTACAC : 1710969 88 : tLysArgAsnPheLeu<->UnkAsnTyrAspAspHisGluArgLysMetIle<->G : 104 :!!|||.!.|||:!! :!!|||:!!!!: !!|||||||||!!::!: ! rGluArgGlnPheMetAsnGlyAspTyrAsnGluAspGluArgLysIleValPheA 1710970 : AGAGCGACAATTCATGAACGGGGATTACAACGAGGACGAGAGGAAGATTGTGTTCG : 1711026 105 : lyCysAsnZedLysCysThr-SerSerSerValSerSerArgPheSerArgTrpAr : 122 !|||!!.... !||||||#|||||| !|||||||||!.!.!.!!!! !!::|| spCysLysArgLeuCysThr#SerSerLeuValSerSerHisLeu***LeuTyrAr 1711027 : ATTGTAAACGCCTGTGTACATTCTTCACTTGTTTCCTCTCATCTGTGACTTTATCG : 1711081 123 : gProLeuLeuLeuThrSerSerValArgLeuLeuVal{L} >>>> Target In : 135 | !!!!!! !||||||||||||:!!!:!!!! !|||{!} 115 gAlaPheSerLeuThrSerSerLeuGlnPheThrVal{M}+- 1711082 : TGCGTTCTCTCTTACGTCGTCACTCCAATTTACAGTA{A}gc.............. : 1711123 136 : tron 2 >>>> {ys}AsnIleGlyLysAsnGluSerAspArgIleLeuProPhe : 148 bp { !}|||||||||!:!||||||||||||||||||||||||||| ++{et}AsnIleGlyArgAsnGluSerAspArgIleLeuProPhe 1711124 : ...........ag{TG}AATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTT : 1711274 149 : AsnMetTrpValAsnLeuLeuLeuAsnIleThrSerTyrPheGluIleThrTyrTh : 167 !!.||||||:!!:!!:!!! ! !:::!!:||| |||||||||||| :::|| LysMetTrpIleAspIleProThrSerMetThrProTyrPheGluIlePhePheTh 1711275 : AAAATGTGGATTGATATACCGACATCGATGACACcgtattttgaaatattcttcac : 1711331 168 : rLeuGln >>>> Target Intron 3 >>>> UnkPheSerLeuSerLeuTy : 176 ||||||| 546 bp |||||| !|| rLeuGln++ ++Val------LeuSerAlaTy 1711332 : cTTACAGgt.........................agGTT------TTATCCGCGTA : 1711898 177 : rHisIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuH : 195 |!!.||||||||||||||| !|||||||||||| !!||||||||||||||||||| rGlnIleGlyValSerTyrGlyCysPheAspAsnValLeuCysIleMetAsnLeuH 1711899 : TCAAATTGGCGTGAGTTACGGTTGCTTCGACAACGTTCTATGCATCATGAACCTAC : 1711955 196 : isValAlaGlyGlnPheGlnValLeuGlnTyrArgIleSerAsnIleIleTyrUnk : 213 ||:!!||| !||||||!:!:!!||||||:!!|||:!: !||||||! ! ! isLeuAlaThrGlnPheArgIleLeuGlnHisArgLeuValAsnIleAsnGlyLeu 1711956 : ACTTGGCCACTCAGTTTCGAATACTGCAACATAGACTGGTGAATATAAACGGTCTG : 1712009 214 : ArgPheAsn<-><-><->GluLysLysGluLysLeuIleValAspSerUnk<-><- : 228 !:! !!!. |||||| |||! !! !|||:!!||||||... LysSerLysGlnThrProGluLysGlyGluThrSerIleIleAspSerThrGluPh 1712010 : AAGAGCAAACAGACACCGGAGAAAGGTGAAACGTCGATTATAGATTCGACAGAATT : 1712066 229 : >AlaThrLysCysTyrAlaIlePheLysLysUnkGlnHisGlnAlaLeuIleTyrL : 246 ||| !!!.! !|||! !:!!||||||!:! !.!||| !! ! ! : eAlaAspAsnSerTyrAspValPheLysArgCysValArgGlnHisGlnSerLeuM 1712067 : TGCGGATAACTCTTACGACGTTTTCAAAAGATGCGTTCGTCAACATCAATCTCTGA : 1712123 247 : euIleTyrCysArgLysLeuGluGluValPheAsnLeuIleValLeuGluGlnVal : 264 !! !!:!|||...||||||||||||:::|||!:!:!!|||:!!|||! !|||:!! etAlaPheCysGluLysLeuGluGluMetPheSerMetIleIleLeuGlyGlnLeu 1712124 : TGGCTTTCTgcgagaaactcgaagaaatgTTCAGTATGATTATACTGGGGCAATTG : 1712177 265 : LeuMetPheSerLeuLeuIleCysLeuAspGlyTyrGlnIleLeuMet >>>> T : 281 |||:!!||||||:!!!!!!!:|||||||||! !! !|||:!!|||:!! LeuValPheSerIlePheMetCysLeuAspValCysGlnValLeuLeu++ 1712178 : TTAGTGTTCAGTATTTTTATGTGTCTCGACGTGTGCCAAGTACTTCTGgt...... : 1712230 282 : arget Intron 4 >>>> AlaAspGlyAspValLysThrArgLeuIlePheSe : 292 142 bp !!! !!.!..!||| ! !!:!:::||||||:: ++ProGlyAlaSerValGlyLysGlnMetIlePheTh 1712231 : ...................agCCAGGTGCATCTGTGGGTAAACAGAtgattttcac : 1712403 293 : rPheHisIleLeuGlyPheLeuCysGlnLeuLeuMetPheSerTyrSerCysAspC : 311 :||||||::! !|||! !:!!||||||||||||||||||!!!||||||||||||| rPheHisLeuAlaGlyCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspC 1712404 : gtttcacctAGCGGGATGTATGTGTCAATTGCTGATGTTTACGTACAGCTGCGATT : 1712460 312 : ysIleIleArgTrpThrLeuUnk >>>> Target Intron 5 >>>> ProL : 320 ||||||||! ! !:!||| 30 bp |||! ysIleIleThrGluSerLeuAsn++ -+ProA 1712461 : GTATAATAACGGAAAGTTTGAACgt.........................ggCCAC : 1712517 321 : euLeuSerMetThrSerSerArgArgMetIleArgLysAspLeuIleLeuValIle : 338 !||| !!|||!:!!!!!!! !!||||||||||||||||||||||||||||||||| rgLeuProMetSerThrArgGlyArgMetIleArgLysAspLeuIleLeuValIle 1712518 : GTTTGCCAATGAGCACGAGAGGAAGAATGATAAGGAAGGATTTGATACTCGTTATC : 1712571 339 : MetArgSerAsnValProCysTyrLeuThrGlyArgGlyPhePheIleValSerLe : 357 !!:||||||!..|||||||||! !||||||!.!||||||||||||:!!:!!||||| IleArgSerArgValProCysCysLeuThrAlaArgGlyPhePheValIleSerLe 1712572 : ATAAGATCGAGAGTACCTTGTTGCTTGACCGCCAGAGGATTCTTCGTAATATCTTT : 1712628 358 : uGluMetTyrUnk<-> >>>> Target Intron 6 >>>> ValLeuSerTh : 365 ||||! !|||... 634 bp |||:!!||||| uGluThrTyrThrLys++ ++ValIleSerTh 1712629 : GGAAACGTATACGAAGgt.........................agGTTATAAGTAC : 1713289 366 : rAla<->AlaUnkPheThrLeuLeuLysGlnArgThrGluAlaThrSer : 380 |||| :!! ||||||||||||!:!||||||! !|||! !!:!!:! rAlaValSerTyrPheThrLeuLeuArgGlnArgIleGluGluSerAsn 1713290 : AGCAGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAGGAAAGCAAT : 1713339 vulgar: AmOr93PSE 3 380 . KQ414915.1 1710224 1713339 + 630 M 48 144 5 0 2 I 0 491 3 0 2 M 41 123 G 0 3 M 11 33 G 0 3 M 7 21 F 0 1 M 24 72 S 0 1 5 0 2 I 0 111 3 0 2 S 1 2 M 34 102 5 0 2 I 0 542 3 0 2 M 1 3 G 2 0 M 44 132 G 0 9 M 11 33 G 0 6 M 53 159 5 0 2 I 0 138 3 0 2 M 38 114 5 0 2 I 0 26 3 0 2 M 43 129 G 0 3 5 0 2 I 0 630 3 0 2 M 5 15 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1710225 1713339 630 + . gene_id 1 ; sequence AmOr93PSE ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1710225 1710368 . + . KQ414915.1 exonerate:protein2genome:local exon 1710225 1710368 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1710369 1710370 . + . intron_id 1 ; splice_site "CT" KQ414915.1 exonerate:protein2genome:local intron 1710369 1710863 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1710862 1710863 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1710864 1711120 . + . KQ414915.1 exonerate:protein2genome:local exon 1710864 1711120 . + . insertions 6 ; deletions 0 ; frameshifts 1 KQ414915.1 exonerate:protein2genome:local splice5 1711121 1711122 . + . intron_id 2 ; splice_site "GC" KQ414915.1 exonerate:protein2genome:local intron 1711121 1711235 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1711234 1711235 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711236 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711236 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712227 . + . insertions 15 ; deletions 2 KQ414915.1 exonerate:protein2genome:local splice5 1712228 1712229 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712228 1712369 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1712368 1712369 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1712370 1712483 . + . KQ414915.1 exonerate:protein2genome:local exon 1712370 1712483 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712484 1712485 . + . intron_id 5 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712484 1712513 . + . intron_id 5 KQ414915.1 exonerate:protein2genome:local splice3 1712512 1712513 . + . intron_id 4 ; splice_site "GG" KQ414915.1 exonerate:protein2genome:local cds 1712514 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712514 1712645 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 6 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 6 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 5 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713339 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713339 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1710225 1713339 630 + . alignment_id 1 ; Query AmOr93PSE ; Align 1710225 4 144 ; Align 1710864 52 123 ; Align 1710990 93 33 ; Align 1711026 104 21 ; Align 1711048 111 72 ; Align 1711238 136 102 ; Align 1711886 170 3 ; Align 1711889 173 132 ; Align 1712030 217 33 ; Align 1712069 228 159 ; Align 1712370 281 114 ; Align 1712514 319 129 ; Align 1713280 362 15 ; Align 1713298 367 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr93PSE Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 498 Query range: 134 -> 378 Target range: 1706998 -> 1709246 135 : LysAsnIleGlyLysAsnGluSerAspArgIleLeuProPheAsnMetTrpValAs : 153 :!!!::|||||||||||||||||||||||||||||| ! !!|||.!.|||:!!:! GluSerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAs 1706999 : GAAAgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGA : 1707053 154 : nLeuLeuLeuAsnIleThrSerTyrPheGluIleThrTyrThrLeuGln >>>> : 170 !!!!! ! !!.!!!:||| !!|||!:!|||||| !!:!|||! !||| pPheProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707054 : CTTTCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt..... : 1707106 171 : Target Intron 1 >>>> UnkPheSerLeuSerLeuTyrHisIleGlyValS : 181 276 bp ||| ! !:!! :!!:!! !!:!!| ++ValPhe------IleValMetTyrValCysIleS 1707107 : ....................agGTTTTT------ATCGTAATGTACGTTTGCATAA : 1707407 182 : erTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGln : 199 |||||.!!|||.!!|||||||||||||||!!:!!:|||||||||..!||| !||| erTyrLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGln 1707408 : GCTACCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAA : 1707461 200 : PheGlnValLeuGlnTyrArgIleSerAsnIleIleTyrUnkArgPheAsnGluLy : 218 |||!:!:!!||||||||||||:!:||||||:!: ! !...!.! ..!... PheArgIleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAs 1707462 : TTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcga : 1707518 219 : sLysGluLysLeuIleValAspSerUnkAlaThrLysCysTyrAlaIlePheLysL : 237 ||| ... ... ||| :!! !:!!|||||||||! ||||||! pLysIleSerLysLysThrProSerAsnSerAspGluCysTyrAlaLysPheLysA 1707519 : taaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAA : 1707575 238 : ysUnkGlnHisGlnAlaLeuIleTyrLeuIleTyrCysArgLysLeuGluGluVal : 255 !. !!.||| !! ! ! !:!! !||||||!.!:!!|||:!!|||||| snCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluVal 1707576 : ATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGGTG : 1707629 256 : PheAsnLeuIleValLeuGluGlnValLeuMetPheSerLeuLeuIleCysLeuAs : 274 |||..!|||.!!||||||! !|||||||||:!:||||||||||||!!:|||||||| PheGlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAs 1707630 : TTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGA : 1707686 275 : pGlyTyrGlnIleLeuMet >>>> Target Intron 2 >>>> AlaAspGl : 283 ||||||| :!::!!||| 457 bp ! !||| pGlyTyr---LeuValMet++ ++GluAspTh 1707687 : TGGATAT---TTGGTGATGgt.........................agGAAGATAC : 1708167 284 : yAspValLysThrArgLeuIlePheSerPheHisIleLeuGlyPheLeuCysGlnL : 302 ! !:!!! ! !||||||! !|||! !||||||:!! !|||! !|||||||||| rProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnL 1708168 : TCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAAC : 1708224 303 : euLeuMetPheSerTyrSerCysAspCysIleIleArgTrpThrLeuUnk >>>> : 319 |||||||||||!!!|||||||||||||||:!:|||||| !:!||| euLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsn++ 1708225 : TGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACgt.... : 1708277 320 : Target Intron 3 >>>> ProLeuLeuSerMetThrSerSerArgArgMet : 329 30 bp !! !||| !!||| !!!!||| !!|||||| -+IleHisLeuProMetAspArgSerGlyArgMet 1708278 : .....................ggATTCACTTGCCAATGGACAGATCTGGGCGAATG : 1708335 330 : IleArgLysAspLeuIleLeuValIleMetArgSerAsnValProCysTyrLeuTh : 348 :!:||||||||||||! !!!!|||||| ||||||!..|||||||||! !||||| LeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuTh 1708336 : CTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCAC : 1708392 349 : rGlyArgGlyPhePheIleValSerLeuGluMetTyr<->Unk >>>> Target : 362 |!.! !!||||||||| !||||||||||||! !||| ... 7 rAlaCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708393 : TGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt........... : 1708439 363 : Intron 4 >>>> ValLeuSerThrAlaAlaUnkPheThrLeuLeuLysGlnA : 375 59 bp :!!|||||||||||||||...!:! ! !||| !!:!! ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgL 1708440 : ..............agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTACGAA : 1709235 376 : rgThrGluAla : 378 :! !|||||| ysGlnGluAla 1709236 : AACAAGAAGCA : 1709246 vulgar: AmOr93PSE 134 378 . KQ414915.1 1706998 1709246 + 498 M 35 105 5 0 2 I 0 272 3 0 2 M 2 6 G 2 0 M 103 309 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 38 114 5 0 2 I 0 26 3 0 2 M 42 126 G 0 3 M 1 3 5 0 2 I 0 755 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1706999 1709246 498 + . gene_id 2 ; sequence AmOr93PSE ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1706999 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1706999 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 3 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708274 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708274 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708275 1708276 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708275 1708304 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1708303 1708304 . + . intron_id 2 ; splice_site "GG" KQ414915.1 exonerate:protein2genome:local cds 1708305 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708305 1708436 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709246 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709246 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1706999 1709246 498 + . alignment_id 2 ; Query AmOr93PSE ; Align 1706999 135 105 ; Align 1707380 170 6 ; Align 1707386 174 309 ; Align 1707695 278 9 ; Align 1708161 281 114 ; Align 1708305 319 126 ; Align 1708434 361 3 ; Align 1709196 362 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr93PSE Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 410 Query range: 7 -> 280 Target range: 1697539 -> 1699971 8 : ValSerUnkIlePheMetLysLeuValGlyIleTrpMetAlaGlyAsnGlyZedGl : 26 :!!!!!....!!!!.||||||:!!||||||:!!|||:!:||| !:!!.!!:::|| MetThrSerPheLeuMetLysIleValGlyLeuTrpLeuAlaLysAspSerLysGl 1697540 : ATGACGTCGTTTTTAATGAAGATCGTCGGTCTTTGGTTAGCGAAAGACAGCAAGGA : 1697594 27 : uUnkIleThrLeuPheThrAlaIleIlePheSerGlyTyrAsnLeuZedMet{T} : 44 | !! !! ! !.!!:!:|||!:!!!!! ! ! :!! .!.{ } uGluArgLysArgArgTyrThrLeuIleTyrThrValValAlaIleLeuPhe{G}+ 1697595 : GGAACGCAAGCGTCGGTACACTTTGATCTATACGGTGGTCGCGATTTTGTTT{G}g : 1697649 45 : >>>> Target Intron 1 >>>> {yr}PheIleLeuGlyAspPheSerAla : 52 876 bp { !} ::: ...... ! - ++{ly}AsnThrIlePheGlnLeu***Asp 1697650 : a.........................ag{gc}aatacaatttttcaattataggAC : 1698548 53 : CysLeuPhePheIleSerIleIleLeuSerSerIleMetLeuLeuLeuLysIleIl : 71 ||| !!:! ! !!!!! !||||||!!! !||||||:!!|||||||||:!:.! CysAlaTyrThrAlaCysAsnIleLeuCysLeuIleMetValLeuLeuLysLeuPh 1698549 : TGTGCTTACACCGCTTGTAACATTCTCTGCCTGATTATGGTACTGTTAAAGCTGTT : 1698605 72 : eIleLeuPheSerHisArgGluAspPhePheHisLeuIleLeuTyrMetLysArgA : 90 !:!!:!!|||! !||||||:!!!!:|||.!!.!.|||::::::|||||| :::| eValValPheIleHisArgLysGluPheIleGluLeuLeuValTyrMetTyrLysA 1698606 : CGTTGTATTCATACACAGGAAAGAATTCATCGAACTgcttgtatatatgtacaaaa : 1698662 91 : snPheLeu<->UnkAsnTyrAspAspHisGluArgLysMetIleGlyCysAsnZed : 107 ||||| ||||||||| !:!!|||! ! !:!!:!: ! ! !... snPheTrpHisLeuAsnTyrAspCysAsnGluLeuLeuLeuLeuGlnAspCysArg 1698663 : atttttggcACCTCAATTACGATTGCAACGAACTACTACTGCTGCAAGACTGCAGA : 1698716 108 : LysCysThrSerSerSerValSerSerArgPheSerArgTrpArgProLeuLeuLe : 126 !:! !!:!!!!! !!!!:!!!!!! !! ! !! ! !! !:! ! !:!!:! ArgIleSerThrIleCysIleThrLeuIleAsnPheCysAlaGlnGlyThrIleVa 1698717 : AGAATTAGCACTATATGTATCACGTTGATTAACTTCTGTGCTCAAGGCACAATTGT : 1698773 127 : uThrSerSerValArgLeuLeuVal{L} >>>> Target Intron 2 >>>> : 135 !!:!! ! !:!!! !! !:!!:!!{ } 232 bp lSerTyrValLeuThrProIleIle{A}++ + 1698774 : CAGCTACGTGCTAACACCTATTATA{G}gt.........................a : 1699031 136 : {ys}AsnIleGlyLysAsnGluSerAspArgIleLeuProPheAsnMetTrpVal : 152 { !}|||||||||:::|||...|||||||||:!:||||||||||||||||||||| +{la}AsnIleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTrpVal 1699032 : g{ca}aatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTGGGTT : 1699083 153 : AsnLeuLeuLeuAsnIleThrSerTyrPheGluIleThrTyrThrLeuGln >>> : 170 :!!|||! !|||::!:!::!! !! !:!||||||..!!:!..!|||||| AspLeuProLeuSerValSerProThrTyrGluIleValPheValLeuGln++ 1699084 : GATTTGCCGCTGTCTGTGTCACCAACGTACGAAATAGTGTTCGTGCTTCAGgt... : 1699139 171 : > Target Intron 3 >>>> UnkPheSerLeuSerLeuTyrHisIleGlyVa : 180 499 bp |||||||||||||||:!!||||| ++Val------LeuSerLeuTyrHisValGlyVa 1699140 : ......................agGTT------CTGTCTTTGTACCACGTTGGTGT : 1699660 181 : lSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyG : 199 |!!!|||.!!||||||||||||.!!||||||:!:||||||||||||!.!||| !| lCysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrG 1699661 : ATGTTACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTACTC : 1699717 200 : lnPheGlnValLeuGlnTyrArgIleSerAsnIle<-><-><->IleTyrUnkArg : 214 |||||!:::!!||||||||||||:!!||||||:!: ! ! !:! lnPheArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysGln 1699718 : AATTTCGTATACTGCAATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGCAA : 1699771 215 : PheAsnGluLysLysGluLysLeuIleValAspSerUnkAlaThrLysCysTyrAl : 233 ! :!!!!:!!.:!!...!.. ! !:!!..! !! ||| !!!.|||||| ValAspAspAsnGluSerSerAlaAlaLeuSerArgPheAlaGluAsnCysTyrLy 1699772 : GTAGATGACAATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAA : 1699828 234 : aIlePheLysLysUnkGlnHisGlnAlaLeuIleTyrLeuIleTyrCysArgLysL : 252 ! ||||||!!. !!..||| !! !! !:!!:!!! ||||||!.!!:!| sAlaPheLysAsnCysValArgGlnHisGlnAsnHisIleThrTyrCysHisArgL 1699829 : GGCGTTTAAAAATTGCGTACGACAACATCAGAATCATATCACGTACTGTCACAGAT : 1699885 253 : euGluGluValPheAsnLeuIleValLeuGluGlnValLeuMetPheSerLeuLeu : 270 ||.!.|||:!!|||!..:!!|||||||||! !!!.:!!|||:!:|||||||||||| euAsnGluIlePheThrValIleValLeuGlyHisIleLeuValPheSerLeuLeu 1699886 : TGAACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGCCTTCTG : 1699939 271 : IleCysLeuAspGlyTyrGlnIleLeuMet : 280 |||||||||! !|||!:!|||:!:|||:!: IleCysLeuValGlyPheGlnValLeuVal 1699940 : ATATGTCTGGTTGGATTCCAAGTGCTCGTA : 1699971 vulgar: AmOr93PSE 7 280 . KQ414915.1 1697539 1699971 + 410 M 36 108 S 0 1 5 0 2 I 0 872 3 0 2 S 1 2 M 48 144 G 0 3 M 42 126 S 0 1 5 0 2 I 0 228 3 0 2 S 1 2 M 34 102 5 0 2 I 0 495 3 0 2 M 1 3 G 2 0 M 38 114 G 0 9 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1697540 1699971 410 + . gene_id 3 ; sequence AmOr93PSE ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1697540 1697648 . + . KQ414915.1 exonerate:protein2genome:local exon 1697540 1697648 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1697649 1697650 . + . intron_id 1 ; splice_site "GA" KQ414915.1 exonerate:protein2genome:local intron 1697649 1698524 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1698523 1698524 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1698525 1698800 . + . KQ414915.1 exonerate:protein2genome:local exon 1698525 1698800 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1698801 1698802 . + . intron_id 2 ; splice_site "Gt" KQ414915.1 exonerate:protein2genome:local intron 1698801 1699032 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1699031 1699032 . + . intron_id 1 ; splice_site "Ag" KQ414915.1 exonerate:protein2genome:local cds 1699033 1699136 . + . KQ414915.1 exonerate:protein2genome:local exon 1699033 1699136 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699137 1699138 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699137 1699635 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1699634 1699635 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699636 1699971 . + . KQ414915.1 exonerate:protein2genome:local exon 1699636 1699971 . + . insertions 9 ; deletions 2 KQ414915.1 exonerate:protein2genome:local similarity 1697540 1699971 410 + . alignment_id 3 ; Query AmOr93PSE ; Align 1697540 8 108 ; Align 1698527 45 144 ; Align 1698674 93 126 ; Align 1699035 136 102 ; Align 1699636 170 3 ; Align 1699639 173 114 ; Align 1699762 211 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr93PSE Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 402 Query range: 124 -> 376 Target range: 1694322 -> 1696260 125 : LeuLeuThrSerSerValArgLeuLeuValLysAsnIleGlyLysAsnGluSerAs : 143 :!! !..!!:!!!!||| !! !!!!:!! !|||:!!|||||||||:!!|||!! IleSerValAsnCysValPheTyrPheLeuAlaAsnValGlyLysAsnGlnSerGl 1694323 : ATAAGTGTCAACTGTGTGTTCTATTTTTTAGCAAATGTTGGAAAAAACCAATCCGA : 1694377 144 : pArgIleLeuProPheAsnMetTrpValAsnLeuLeuLeuAsnIleThrSerTyrP : 162 :|||!!:|||||||||||||||||||||:!!!!!! ! !...:!::!! !!|||! uArgMetLeuProPheAsnMetTrpValAspPheProThrGlyLeuSerProTyrT 1694378 : AAGGATGTTACCTTTCAACATGTGGGTTGACTTTCCTACAGGATTGTCGCCTTATT : 1694434 163 : heGluIleThrTyrThrLeuGlnUnkPhe >>>> Target Intron 1 >>>> : 172 :!|||:!! !!:!! !:!!||| 409 bp yrGluValLeuPheIleIleGln------++ 1694435 : ATGAAGTCCTTTTCATCATACAG------gt......................... : 1694460 173 : SerLeuSerLeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPheLeu : 189 !!!|||!!!:!!||||||:!!|||:!!!!!|||.!.||||||||||||.!!||| ++ThrLeuCysValTyrHisValGlyIleCysTyrMetCysPheAspAsnIleLeu 1694461 : agACACTTTGCGTGTACCATGTCGGTATATGTTACATGTGCTTCGACAACATCCTC : 1694918 190 : CysIleMetAsnLeuHisValAlaGlyGlnPheGlnValLeuGlnTyrArg<-><- : 207 !!:!!:!!||||||||||||||| !||||||!:::!!|||||||||||| SerLeuLeuAsnLeuHisValAlaThrGlnPheArgIleLeuGlnTyrArgPheMe 1694919 : AGCCTTCTGAATCTTCACGTGGCCACTCAATTTCGTATCCTTCAATACCGATTCAT : 1694975 208 : ><->IleSerAsnIleIleTyrUnkArgPheAsnGluLysLysGluLysLeuIleV : 224 :!:||||||:!!||| ! !:! :!!! :::::: :::::: tAsnLeuSerAsnValIleGluLysGlnThrAspGlyArgGluLeuGluIleGlyT 1694976 : GAATTTGAGTAATGTAATTGAGAAGCAAACAGACGGTcgagaattggaaattggtT : 1695032 225 : alAspSerUnkAlaThrLysCysTyrAlaIlePheLysLysUnkGlnHisGlnAla : 242 ! !:! .!!..! ! !!||| ! !!!.|||!.. !!!. ! ! yrThrAsnPheThrValAspSerTyrLeuGlnLeuLysSerCysValGlnTyrHis 1695033 : ACACAAATTTCACAGTCGATAGTTACTTACAATTGAAGAGTTGCGTGCAATACCAT : 1695086 243 : LeuIleTyrLeuIleTyrCysArgLysLeuGluGluValPheAsnLeuIleValLe : 261 ! ! ! ! ! !||||||!:!|||||||||.!.:!!|||:::|||:!!||||| GlnAlaLeuThrGlyTyrCysLysLysLeuGluAsnIlePheSerLeuLeuValLe 1695087 : CAGGCACTTACAGGCTATTGCAAAAAGTTGGAGAACATATTTTCGTTGCTTGTGCT : 1695143 262 : uGluGlnValLeuMetPheSerLeuLeuIleCysLeuAspGlyTyrGlnIleLeuM : 280 |! !|||||||||.!..!.:!!:!!:!!:!!||||||! |||||||||:!!!!!: uGlyGlnValLeuPheLeuAlaMetValLeuCysLeuValGlyTyrGlnLeuPheL 1695144 : TGGACAAGTGCTTTTCCTAGCCATGGTACTTTGCCTCGTGGGATATCAGCTATTTC : 1695200 281 : et >>>> Target Intron 2 >>>> AlaAspGlyAspValLysThrArgL : 289 !! 415 bp .!!|||..! !..!! !!.!: eu++ ++ThrAspSerProProSerArgAsnV 1695201 : TGgt.........................agACAGACTCACCACCTTCGAGAAACG : 1695642 290 : euIlePheSerPheHisIleLeuGlyPheLeuCysGlnLeuLeuMetPheSerTyr : 307 !! !!!. !.!!:!!:!: !||| !||||||||||||!!!||||||!!!||| alGlyLeuValLeuAsnLeuAlaGlyThrLeuCysGlnLeuPheMetPheThrTyr 1695643 : TCGGATTGGTACTCAACCTGGCAGGCACTTTGTGTCAACTTTTTATGTTCACGTAC : 1695696 308 : SerCysAspCysIleIleArgTrpThrLeuUnk >>>> Target Intron 3 : 319 ||||||||| !!:!:! !||| !!:!:!! 30 bp SerCysAspGlyLeuThrArgGluSerMetAsp++ 1695697 : AGTTGCGATGGTTTGACAAGAGAGAGCATGGACgt..................... : 1695734 320 : >>>> ProLeuLeuSerMetThrSerSerArgArgMetIleArgLysAspLeuIl : 335 !! !||| !!||| !!!!!:! !!!:!! :!:|||:!!..!:!!:! -+AlaAsnLeuProMetAspArgAsnGlyLysSerValArgGlnSerMetLe 1695735 : ....ggGCAAATCTGCCAATGGATAGAAATGGGAAAAGTGTGCGACAAAGCATGCT : 1695810 336 : eLeuValIleMetArgSerAsnValProCysTyrLeuThrGlyArgGlyPhePheI : 354 !:!!|||||||||||||||||| ! !|||! !||||||!.!!!!||||||||| uMetValIleMetArgSerAsnArgCysCysCysLeuThrAlaSerGlyPhePheP 1695811 : AATGGTGATCATGAGGTCGAACAGGTGTTGCTGCTTAACAGCCAGCGGGTTCTTTC : 1695867 355 : leValSerLeuGluMetTyrUnk<-> >>>> Target Intron 4 >>>> V : 362 !||||||||||||! |||... 319 bp | roValSerLeuGluThrTyrThrGly++ ++V 1695868 : CAGTTTCTCTCGAGACTTACACTGGGgt.........................agG : 1696213 363 : alLeuSerThrAla<->AlaUnkPheThrLeuLeuLysGlnArgThr : 376 |||||||||||||| :!! ||||||||||||!:!||| !||| alLeuSerThrAlaMetSerTyrPheThrLeuLeuArgGlnSerThr 1696214 : TCCTCAGCACTGCAATGTCATACTTTACACTACTGAGACAATCGACT : 1696260 vulgar: AmOr93PSE 124 376 . KQ414915.1 1694322 1696260 + 402 M 45 135 G 2 0 5 0 2 I 0 405 3 0 2 M 35 105 G 0 9 M 74 222 5 0 2 I 0 411 3 0 2 M 38 114 5 0 2 I 0 26 3 0 2 M 43 129 G 0 3 5 0 2 I 0 315 3 0 2 M 5 15 G 0 3 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694323 1696260 402 + . gene_id 4 ; sequence AmOr93PSE ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694323 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694323 1694457 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695731 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695731 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695732 1695733 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695732 1695761 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1695760 1695761 . + . intron_id 2 ; splice_site "GG" KQ414915.1 exonerate:protein2genome:local cds 1695762 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695762 1695893 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 3 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696260 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696260 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694323 1696260 402 + . alignment_id 4 ; Query AmOr93PSE ; Align 1694323 125 135 ; Align 1694867 172 105 ; Align 1694981 207 222 ; Align 1695618 281 114 ; Align 1695762 319 129 ; Align 1696213 362 15 ; Align 1696231 367 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr93PSE Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 293 Query range: 172 -> 313 Target range: 1702019 -> 1703058 173 : LeuSerLeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIl : 191 |||||||||||||||:!!||||||!!!|||.!!||||||||||||.!!||||||:! LeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLeuCysLe 1702020 : CTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTTGTGTTT : 1702074 192 : eMetAsnLeuHisValAlaGlyGlnPheGlnValLeuGlnTyrArgIleSerAsnI : 210 :||||||||||||!.!||| !||||||!:::!!||||||||||||:!!||||||: uMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnL 1702075 : GATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTATCGAACT : 1702131 211 : le<-><-><->IleTyrUnkArgPheAsnGluLysLysGluLysLeuIleValAsp : 225 !: ! ! !:! ! :!!!!:!!.:!!...!.. ! !:!!..! euGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAlaLeuSer 1702132 : TGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCTCTGTCT : 1702185 226 : SerUnkAlaThrLysCysTyrAlaIlePheLysLysUnkGlnHisGlnAlaLeuIl : 244 !! ||| !!!.|||||| ! ||||||!!. !!..||| !! !! ArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHisGlnAs 1702186 : CGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACATCAGAA : 1702242 245 : eTyrLeuIleTyrCysArgLysLeuGluGluValPheAsnLeuIleValLeuGluG : 263 !:!!:!!! ||||||!.!!:!|||.!.|||:!!|||!..:!!|||||||||! !! nHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValLeuGlyH 1702243 : TCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTACTCGGAC : 1702299 264 : lnValLeuMetPheSerLeuLeuIleCysLeuAspGlyTyrGlnIleLeuMetAla : 281 !.:!!|||:!:|||||||||||||||||||||! !|||!:!|||:!:|||:!!!.! isIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeuValVal 1702300 : ACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTCGTGGTA : 1702353 282 : AspGlyAspValLysThrArgLeuIlePheSer{P} >>>> Target Intron : 293 ! !! !! ! ::: ||| {.} 607 bp ArgPheValGluProLeuIleIleLysPheHis{I}++ 1702354 : CGTTTCGTTGAACCTttgattattaaatttcat{a}gt.................. : 1702392 294 : 1 >>>> {he}HisIleLeuGlyPheLeuCysGlnLeuLeuMetPheSerTyrS : 308 {!!}||||||:!!||| !|||||||||||||||:!:|||!!!|||| +-{le}HisIleValGlySerLeuCysGlnLeuLeuLeuPheThrTyrS 1702393 : .......at{TT}CACATAGTCGGTAGTCTATGCCAACTATTGCTATTTACCTATA : 1703041 309 : erCysAspCysIleIle : 313 |||||||| !!:!:||| erCysAspGlyLeuIle 1703042 : GCTGCGACGGTCTGATA : 1703058 vulgar: AmOr93PSE 172 313 . KQ414915.1 1702019 1703058 + 293 M 38 114 G 0 9 M 82 246 S 0 1 5 0 2 I 0 603 3 0 2 S 1 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702020 1703058 293 + . gene_id 5 ; sequence AmOr93PSE ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702020 1702389 . + . KQ414915.1 exonerate:protein2genome:local exon 1702020 1702389 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1702390 1702391 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1702390 1702996 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702995 1702996 . + . intron_id 0 ; splice_site "AT" KQ414915.1 exonerate:protein2genome:local cds 1702997 1703058 . + . KQ414915.1 exonerate:protein2genome:local exon 1702997 1703058 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702020 1703058 293 + . alignment_id 5 ; Query AmOr93PSE ; Align 1702020 173 114 ; Align 1702143 211 246 ; Align 1702999 294 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr93PSE Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 227 Query range: 135 -> 280 Target range: 1688056 -> 1688652 136 : AsnIleGlyLysAsnGluSerAspArgIleLeuProPheAsnMetTrpValAsnLe : 154 |||!!:.!!::!|||:!!|||||||||:!!|||||||||!!.|||||||||:!!! AsnMetSerArgAsnLysSerAspArgValLeuProPheLysMetTrpValAspTr 1688057 : AATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTGGGTCGATTG : 1688111 155 : uLeuLeuAsnIleThrSerTyrPheGluIleThrTyrThrLeuGlnUnkPhe >> : 172 !! !|||::! !||| !!|||!:!|||:!:! !!:!|||!!!||| ! pProLeuSerAspThrProTyrTyrGluLeuMetPheThrPheGlnValSer-- 1688112 : GCCGCTATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAGGTATCGta.. : 1688167 173 : >> Target Intron 1 >>>> SerLeuSerLeuTyrHisIleGlyValSerT : 182 173 bp :!!|||!!!:!!|||!!.||||||!.!:!!| ++AlaLeuCysValTyrGlnIleGlyAlaAlaT 1688168 : .......................agGCGCTGTGCGTGTATCAAATCGGCGCCGCCT : 1688368 183 : yrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGlnPhe : 200 ||.!!|||! !|||!..|||!!!|||!!::!!|||:!!|||||| ! !!|||||| yrIleCysSerAspThrPhePheCysMetLeuAsnMetHisValIleCysGlnPhe 1688369 : ATATCTGCTCCGACACGTTTTTCTGCATGCTGAACATGCACGTGATCTGCCAGTTC : 1688422 201 : GlnValLeuGlnTyrArgIleSerAsnIleIleTyrUnkArgPheAsnGluLysLy : 219 !:::!!|||.!.||||||:!:! !|||!!: ! ! !.!...!! !!! ArgIleLeuAsnTyrArgLeuLeuAsnMetTrpProValIleAspGluArgThrAs 1688423 : CGTATACTAAATTACAGACTGTTGAACATGTGGCCGGTCATCGACGAGCGAACGAA : 1688479 220 : sGluLysLeuIleValAspSerUnkAlaThrLysCysTyrAlaIlePheLysLysU : 238 . !! ! !..!:!!!.! !|||||| ! ! !.!!||| nMetThrGluTyrThrAsnLysCysTyrThrLysLeuIleAspCysIleLys---- 1688480 : CATGACCGAATACACGAACAAATGTTACACCAAGCTGATAGATTGCATCAAA---- : 1688533 239 : nkGlnHisGlnAlaLeuIleTyrLeuIleTyrCysArgLysLeuGluGluValPhe : 256 .!.||||||:!!|||||| ! !:!||| !|||||||||.!.|||!:! --AsnHisGlnSerLeuIleGlu------PheCysValLysLeuGluAsnValTyr 1688534 : --AATCATCAGTCGTTGATCGAG------TTCTGCGTGAAACTCGAGAACGTGTAC : 1688578 257 : AsnLeuIleValLeuGluGlnValLeuMetPheSerLeuLeuIleCysLeuAspGl : 275 !..|||! !:!!|||! !!.:!!:!!:!:||||||||||||!!:|||!!!||| ThrLeuThrIleLeuGlyHisIleValValPheSerLeuLeuMetCysPheAspTh 1688579 : ACGTTGACTATACTCGGCCACATAGTGGTCTTCAGCTTGTTGATGTGCTTCGACAC : 1688635 276 : yTyrGlnIleLeuMet : 280 !|||:!!:!!:!!:!! rTyrGluValValLeu 1688636 : GTACGAGGTAGTTCTG : 1688652 vulgar: AmOr93PSE 135 280 . KQ414915.1 1688056 1688652 + 227 M 36 108 5 0 2 I 0 169 3 0 2 M 65 195 G 2 0 M 7 21 G 2 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688057 1688652 227 + . gene_id 6 ; sequence AmOr93PSE ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688057 1688164 . + . KQ414915.1 exonerate:protein2genome:local exon 1688057 1688164 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688165 1688166 . + . intron_id 1 ; splice_site "TA" KQ414915.1 exonerate:protein2genome:local intron 1688165 1688337 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1688336 1688337 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1688338 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688338 1688652 . + . insertions 0 ; deletions 4 KQ414915.1 exonerate:protein2genome:local similarity 1688057 1688652 227 + . alignment_id 6 ; Query AmOr93PSE ; Align 1688057 136 108 ; Align 1688338 172 195 ; Align 1688533 239 21 ; Align 1688554 248 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr93PSE Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 133 -> 219 Target range: 1681719 -> 1682094 134 : ValLysAsnIleGlyLysAsnGluSerAspArgIleLeuProPheAsnMetTrpVa : 152 ...::!||||||||||||!:!!!:..!!!:||||||||||||||| .!. ! || ThrGluAsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgVa 1681720 : acagaGAACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGT : 1681774 153 : l<->AsnLeuLeuLeuAsnIleThrSerTyrPheGluIleThrTyrThrLeuGlnU : 170 | ||||||! ! !::!:!:||| ! |||:::|||||| :::..!:!!:!! lPheAsnLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu- 1681775 : GTTTAACTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAG- : 1681831 171 : nkPhe >>>> Target Intron 1 >>>> SerLeuSerLeuTyrHisIleG : 179 120 bp !!!||||||:!! ||| | -----++ ++ThrLeuSerValValHisSerG 1681832 : -----gt.........................agACATTATCTGTGGTGCATTCGG : 1681972 180 : lyValSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAla : 197 ||:!!!!!!:!! !||||||||||||||||||||||||:!!!:!:!!||||||!.! lyIleCysPheCysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGly 1681973 : GAATTTGTTTCTGTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGT : 1682026 198 : GlyGlnPheGlnValLeuGlnTyrArgIleSerAsnIleIleTyrUnkArgPheAs : 216 |||||||||:!!:!!|||||| !!!:!:!!..!!..:!!:!: ! !:: :: GlyGlnPheLysIleLeuGlnAsnLysLeuGlnThrValLeuSerGluLysSerSe 1682027 : GGACAGTTTAAGATTTTACAAAACAAACTCCAAACAGTATTGAGTGAGAAatcttc : 1682083 217 : nGluLysLys : 219 :::::::||| rLysGluLys 1682084 : gaaagaaaaa : 1682094 vulgar: AmOr93PSE 133 219 . KQ414915.1 1681719 1682094 + 175 M 19 57 G 0 3 M 17 51 G 2 0 5 0 2 I 0 116 3 0 2 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681720 1682094 175 + . gene_id 7 ; sequence AmOr93PSE ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681720 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681720 1681830 . + . insertions 3 ; deletions 2 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682094 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682094 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681720 1682094 175 + . alignment_id 7 ; Query AmOr93PSE ; Align 1681720 134 57 ; Align 1681780 153 51 ; Align 1681951 172 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 255 Query range: 128 -> 238 Target range: 1626 -> 1956 129 : ValIleValIlePheSerAlaIleMetPheIleMetIleProThrIleProProIleLeuAs : 149 |||! !!.!||| !!!!!!.!|||:!!|||:!: !! |||..!! !|||! !||||||:! ValAsnAlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAs 1627 : GTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGA : 1687 150 : nIleIleMetProLeuAsnGluSerArgAspArgGluPheIleTyrProThrTyrPhePheI : 170 !|||:!!:!:||| !||||||||||||||| !! !!:!|||||||||.!!|||!:!|||! pIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheT 1688 : CATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCA : 1750 171 : leAspGluGluLysTyrTyrTyrProIleLeuThrTyrMetAlaThrValIleLeuIleVal : 190 !||||||.!.|||||| !! !|||:!!|||:!!||||||:!!|||||||||:!:||| hrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValVal 1751 : CCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTG : 1810 191 : SerSerValTyrLeuAlaCysAspThrAsnLeuValGlnIleValHisHisGlyCysAlaLe : 211 ! !! !||||||!!!||||||||||||!:!! !:!! ! :!!|||!!.|||||||||!.!|| PheTyrValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLe 1811 : TTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATT : 1873 212 : uLeuAlaIleSerGlyTyrHisPheLysHisAlaValAspAspMetLysPheSerAsnGlyA : 232 |||||||:!:|||||| ...::: ... ! :!:!!. !! !!:!!.!| uLeuAlaValSerGly***LysIleArgSerAsnAspSer***LeuAsnProPheSerAlaA 1874 : GTTGGCCGTGTCCGGgtaaaaaattcgatcgaacgattCGTAGCTCAACCCTTTCAGTGCCA : 1936 233 : snTyrIleAspLeuLeuMet : 238 || ! |||||| !|||!!: snLysIleAspThrLeuIle 1937 : ACAAAATCGATACGCTAATT : 1956 vulgar: AmOr108 128 238 . KQ414921.1 1626 1956 + 255 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1627 1956 255 + . gene_id 1 ; sequence AmOr108 ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1627 1956 . + . KQ414921.1 exonerate:protein2genome:local exon 1627 1956 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1627 1956 255 + . alignment_id 1 ; Query AmOr108 ; Align 1627 129 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 254 Query range: 276 -> 381 Target range: 2943 -> 3320 277 : IleValLeuAlaPheThrGlyThrPheLeuLysLeuSerThrMetGluIleGluIleArgPh : 297 :!::!!:!! ! ||| !.!!!:: !:!!:!!|||!.! !||||||.!. ..!|| LeuIleIleLeuArgThrIleAlaTrpLysGlnValSerAsnSerGluIleAsnAlaGluPh 2944 : CTGATCATCCTCAGAACAATTGCTTGGAAACAGGTGTCGAACTCGGAGATTAACGCGGAGTT : 3004 298 : ePheThrPheCysGlyTyrThrValAlaGlnLeuThrHisLeuPhePheLeuThrIleMetG : 318 | !! ! !||| !!:!! !||| !||||||..!|||:!!.!!!:!||||||:!!...| eAlaLysAspCysThrPheIleValIleGlnLeuValHisIleLeuTyrLeuThrLeuGlnG 3005 : TGCCAAGGATTGCACATTTATCGTGATTCAATTGGTACACATACTTTACCTAACTCTTCAAG : 3067 319 : lyGlnPheLeuIleAsnAlaAsnAspGluIlePheAsnThr{Il} >>>> Target Int : 332 ||||||||:!!|||:!!||||||!!:|||||||||.!.:!!{||} 62 bp lyGlnPheValIleAspAlaAsnGluGluIlePheGluSer{Il}++ 3068 : GACAATTCGTGATCGACGCGAACGAGGAAATCTTCGAATCG{AT}gt............... : 3113 333 : ron 1 >>>> {e}TyrGluAlaHisTrpTyrAsnGlySerSerArgThrGlnSerLeuTy : 348 {|}|||...||| |||||||||.!!..!!.!|||||||||||||||!: ++{e}TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPh 3114 : ..........ag{A}TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTT : 3219 349 : rValLeuValLeuArgLysCysLeuAsnProProThrLeuThrGlyGlyGlyLeuIleValL : 369 !||||||!.!||||||!!.||||||::! !!||| !:!!|||!.!||||||||||||..!: eValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrM 3220 : TGTATTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAA : 3282 370 : euAsnLeuAspSerPheValGlnIleLeuLysLeuSer : 381 !!||||||.!.|||||| !:!!:!! !:::! !||| etAsnLeuGlnSerPheSerGluValThrArgSerSer 3283 : TGAACTTGCAAAGTTTCTCAGAGGTAACACGTTCATCG : 3320 vulgar: AmOr108 276 381 . KQ414921.1 2943 3320 + 254 M 55 165 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 2944 3320 254 + . gene_id 2 ; sequence AmOr108 ; gene_orientation + KQ414921.1 exonerate:protein2genome:local cds 2944 3110 . + . KQ414921.1 exonerate:protein2genome:local exon 2944 3110 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 3111 3112 . + . intron_id 1 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 3111 3172 . + . intron_id 1 KQ414921.1 exonerate:protein2genome:local splice3 3171 3172 . + . intron_id 0 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 3173 3320 . + . KQ414921.1 exonerate:protein2genome:local exon 3173 3320 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 2944 3320 254 + . alignment_id 2 ; Query AmOr108 ; Align 2944 277 165 ; Align 3174 333 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 221 Query range: 121 -> 216 Target range: 1605 -> 1890 122 : PhePheCysSerPheTyrGluValSerIleTyrSerCysGlyPheMetPheLeuSerMetPr : 142 !:!.!! !!.!!:!! !|||!:! ! !|||! !.!!:!!|||:!!|||! !|| TyrIleValLysTyrSerIleValAsnAlaIleValCysValIleLeuPheValSerThrPr 1606 : TACATTGTCAAATATTCGATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCC : 1666 143 : oSerIleProLeuIleMetAsnValIleMetProLeuAsnGluSerArgSerArgGluLeuV : 163 | !! !|||! !|||:!!:!!:!!:!!:!:||| !||||||||||||..! !! !! !: oValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrI 1667 : GGTGACACCGCATATTTTGGACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACA : 1729 164 : alTyrProSerTyrTyrPheValAspGluGlnLysTyrTyrTyrLeuIleThrGlyHisMet : 183 !!||||||:!!|||||||||..!||||||!!.|||||| !! ! !|||! ! !|||||| leTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMet 1730 : TTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATG : 1789 184 : LeuAlaValCysLeuGlyHisValPheValTyrIleAlaCysAspIleAsnLeuIleHisVa : 204 !:!!||| !|||! ! !!!:!||||||.!!|||||||||! !!:!! !|||:!!|| AlaSerValIleLeuValValPheTyrValTyrPheAlaCysAspThrSerTyrIleTyrVa 1790 : GCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGT : 1852 205 : lValHisHisGlyCysAlaLeuLeuThrIleSerGly : 216 ||||!!.|||||||||!.!||||||.!!:!:|||||| lValGlnHisGlyCysGlyLeuLeuAlaValSerGly 1853 : CGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGg : 1890 vulgar: AmOr107 121 216 . KQ414921.1 1605 1890 + 221 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1606 1890 221 + . gene_id 1 ; sequence AmOr107 ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1606 1890 . + . KQ414921.1 exonerate:protein2genome:local exon 1606 1890 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1606 1890 221 + . alignment_id 1 ; Query AmOr107 ; Align 1606 122 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 276 -> 332 Target range: 2943 -> 3111 277 : IleIleValThrPheThrGlyThrPheIleLysLeuThrSerMetGluIleGlyGlyArgPh : 297 :!:|||:!! ! ||| !.!!!::! !:!!:!!:!!!:! !||||||..!!.!..!|| LeuIleIleLeuArgThrIleAlaTrpLysGlnValSerAsnSerGluIleAsnAlaGluPh 2944 : CTGATCATCCTCAGAACAATTGCTTGGAAACAGGTGTCGAACTCGGAGATTAACGCGGAGTT : 3004 298 : ePheThrPheCysThrPheThrIleGlyGlnLeuThrHisLeuLeuPheLeuMetValMetG : 318 | !! ! !|||||||||! !:!: !||||||..!|||:!!|||!:!|||! :!!...| eAlaLysAspCysThrPheIleValIleGlnLeuValHisIleLeuTyrLeuThrLeuGlnG 3005 : TGCCAAGGATTGCACATTTATCGTGATTCAATTGGTACACATACTTTACCTAACTCTTCAAG : 3067 319 : lyGlnPheLeuIleAspSerAsnGluGluValPheLysThrIle : 332 ||||||||:!!||||||:!!|||||||||:!!|||:!!:!!!!: lyGlnPheValIleAspAlaAsnGluGluIlePheGluSerMet 3068 : GACAATTCGTGATCGACGCGAACGAGGAAATCTTCGAATCGATG : 3111 vulgar: AmOr107 276 332 . KQ414921.1 2943 3111 + 121 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 2944 3111 121 + . gene_id 2 ; sequence AmOr107 ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 2944 3111 . + . KQ414921.1 exonerate:protein2genome:local exon 2944 3111 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 2944 3111 121 + . alignment_id 2 ; Query AmOr107 ; Align 2944 277 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 239 Query range: 133 -> 216 Target range: 1641 -> 1890 134 : CysAlaPheMetPheLeuValIleProThrIleProProIleLeuAsnIleValAlaProLe : 154 |||!.!.!!:!!|||:!! !! |||..!! !|||! !||||||:!!|||:!! !||| CysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProLy 1642 : TGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAA : 1702 155 : uAsnValSerArgSerArgGluPheIleTyrProThrTyrTyrPheValAspGluGlnLysT : 175 !|||! !||||||..! !! !!:!|||||||||.!!|||||||||..!||||||!!.|||| sAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysT 1703 : AAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGT : 1765 176 : yrTyrTyrProIleLeuThrHisMetIleAlaValIleLeuValLeuSerSerValTyrLeu : 195 || !! !|||:!!||||||||| :!!||||||||||||:!!! !! !||||||!!! yrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrPhe 1766 : ACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTC : 1825 196 : AlaCysAspThrAsnLeuValGlnIleValHisHisGlyCysAlaLeuLeuAlaIleSerGl : 216 ||||||||||||!:!! !:!! ! :!!|||!!.|||||||||!.!|||||||||:!:||||| AlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGl 1826 : GCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGG : 1888 217 : y : 216 | y 1889 : g : 1890 vulgar: AmOr109 133 216 . KQ414921.1 1641 1890 + 239 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1642 1890 239 + . gene_id 1 ; sequence AmOr109 ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1642 1890 . + . KQ414921.1 exonerate:protein2genome:local exon 1642 1890 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1642 1890 239 + . alignment_id 1 ; Query AmOr109 ; Align 1642 134 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 332 -> 381 Target range: 3173 -> 3320 333 : TyrGluAlaAspTrpTyrAsnGlySerSerLysMetGlnSerLeuTyrValLeuValLeuAr : 353 |||...||| |||||||||.!!..!!.!!:!! !|||||||||!:!||||||!.!||||| TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeuAr 3174 : TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGTTAAG : 3234 354 : gLysCysLeuSerProProLysLeuThrGlyGlyGlyPheValAlaLeuAsnLeuAspSerP : 374 |!!.||||||||| !!|||:!!:!!|||!.!||||||.!.:!!.!!:!!||||||.!.|||| gAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGlnSerP 3235 : AAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAAAGTT : 3297 375 : heValGlnIleLeuLysAlaSer : 381 || !:!!:!! !::::!!||| heSerGluValThrArgSerSer 3298 : TCTCAGAGGTAACACGTTCATCG : 3320 vulgar: AmOr109 332 381 . KQ414921.1 3173 3320 + 142 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 3174 3320 142 + . gene_id 2 ; sequence AmOr109 ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 3174 3320 . + . KQ414921.1 exonerate:protein2genome:local exon 3174 3320 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 3174 3320 142 + . alignment_id 2 ; Query AmOr109 ; Align 3174 333 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 46 -> 92 Target range: 1225 -> 1363 47 : LeuAlaThrGlnIleSerArgValIleValPheTyrSerLeuAspValLeuSerAspGlnLe : 67 ||| ! !|||:!!:!!!:!|||:!: !|||!:!|||||||||||||||! !|||||||| LeuAsnLeuGlnValAlaGlnValValCysPhePheSerLeuAspValLeuIleAspGlnLe 1226 : TTGAACTTGCAGGTAGCACAAGTGGTGTGTTTCTTCAGTTTGGACGTTCTTATAGATCAGCT : 1286 68 : uProTyrIleAsnAlaGlyIleValThrLeuPheLysGlnTyrAsnTyrIleLeuAsnGluA : 88 | !!!:!.!!..!|||! !! !! !||||||!!.|||||| |||||||||:!! !:!!! uSerPhePheGlyAlaValSerGlyThrLeuLeuLysGlnGlyAsnTyrIleValPheLysG 1287 : ATCATTTTTTGGCGCGGTAAGCGGGACACTGTTGAAACAGGGGAACTACATCGTCTTTAAAG : 1349 89 : spLysLeuArgGlu : 92 !::!!:!:...||| luGluValAsnGlu 1350 : AGGAGGTgaatgaa : 1363 vulgar: AmOr109 46 92 . KQ414921.1 1225 1363 + 100 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1226 1363 100 + . gene_id 3 ; sequence AmOr109 ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1226 1363 . + . KQ414921.1 exonerate:protein2genome:local exon 1226 1363 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1226 1363 100 + . alignment_id 3 ; Query AmOr109 ; Align 1226 47 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 442 Query range: 120 -> 379 Target range: 1602 -> 3320 121 : SerPheLeuAlaMetPheTyrPheIleAsnAlaTyrCysCysSerLeuLeuPheLeuGlnVa : 141 !!!!:!:!!!.!! !:!! .!.:!:|||||| ! !||| !:!!||||||:!!..!.. ThrTyrIleValLysTyrSerIleValAsnAlaIleValCysValIleLeuPheValSerTh 1603 : ACGTACATTGTCAAATATTCGATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGAC : 1663 142 : lProTrpThrAlaArgLeuLeuTyrMetIleLysSerGlnAsnThrSerProProMetLeuT : 162 !||| !||| !!!.!:!!||| !!!!::!! ! !!:!!||| !|||! ! !:!: !| rProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaT 1664 : GCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGT : 1726 163 : yrValIleProGlyTyrTyrPheValAspAspAspArgAspTyrTyrTyrPheIleGlnLeu : 182 ||:!! !|||!.!|||||||||..!|||!!: !!!:! ||| !! !:!||| ! yrIleTyrProAlaTyrTyrPheThrAspGluHisLys---TyrAspValTyrIleIleThr 1727 : ACATTTACCCGGCCTATTATTTCACCGACGAGCATAAG---TACGACGTGTACATAATTACG : 1783 183 : HisMetSerLeuSerIleIleMetValAlaAsnValTyrValAlaTyrAspThrCysTyrMe : 203 ||||||:!!! ! !|||:!::!!||| ! !!|||||| !!|||! !|||||| !!|||!! HisMetAlaSerValIleLeuValValPheTyrValTyrPheAlaCysAspThrSerTyrIl 1784 : CACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACAT : 1846 204 : tValPheValGlnHisValCysGlyLeuLeuAlaValAla{Gl} >>>> Target Intr : 217 : ! !!|||||||||! !||||||||||||||||||:!!{||} 265 bp eTyrValValGlnHisGlyCysGlyLeuLeuAlaValSer{Gl}++ 1847 : ATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCC{GG}gt................ : 1892 218 : on 1 >>>> {y}TyrArgPheLysHisAlaIleAspAsp<->SerAlaSerLysAsnSer : 232 {|}||||||!:!||| !||||||! !!: |||::! !!|||!..!:! ++{y}TyrArgTyrLysCysAlaIleValGluLeuSerSerArgLysArgAsn 1893 : .........ag{A}TATCGTTACAAATGTGCGATCGTGGAATTGTCCAGTCGGAAAAGGAAC : 2201 233 : GluGluLysIleLysGluThrCysLysLysIleArgSerSerIleGlnGlyHisGluGlyAl : 253 ...! ! ! ! |||! !! !!:!!:!:!: !! !|||||||||||||||:!! !|| SerValThrGlnAspGluIleTyrArgArgValCysHisSerIleGlnGlyHisGlnHisAl 2202 : AGTGTCACGCAGGATGAAATTTATAGAAGAGTGTGTCATTCGATTCAAGGACACCAGCATGC : 2264 254 : aIleArg<->TyrLeuLysLysIleGluAspThrHisValAsnLeuLeuPheIleSerLeuG : 273 ||||!:! ||||||||||||...... :::|||:::||| ... . aIleLysSerValLeuLysLysIleArgGlnIleValLeuAsnValLeuCysPhePheSerS 2265 : TATAAAGtcggtattaaaaaagatacgtcaaattgttttaaatgttctttgctttttttctA : 2327 274 : lyLeuIleIleMetCys{Ph} >>>> Target Intron 2 >>>> {e}SerIleThr : 282 !!:!!:!!:!!:!: !!{ } 611 bp { }!!!|||.!! erMetLeuLeuLeuArg{Pr}++ ++{o}ThrIleAla 2328 : GCATGTTACTATTACGC{CC}gt.........................ag{A}ACAATTGCT : 2965 283 : LeuLeuLysValValThrMetAspTyrCysLeuAspPheTyrLysTyrSerSerPheLeuIl : 303 ! ! !:!!||| !!.! !!!: ! ! !!!:||| !||| !!!!!!!!|||:!!:! TrpLysGlnValSerAsnSerGluIleAsnAlaGluPheAlaLysAspCysThrPheIleVa 2966 : TGGAAACAGGTGTCGAACTCGGAGATTAACGCGGAGTTTGCCAAGGATTGCACATTTATCGT : 3028 304 : eValGlnLeuMetHisLeuCysTyrValMetIleGlnGlyGlnPheValIleAspSerCysA : 324 ::!!||||||:!:|||:!! !|||:!!! :!!|||||||||||||||||||||:!! !. lIleGlnLeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAspAlaAsnG 3029 : GATTCAATTGGTACACATACTTTACCTAACTCTTCAAGGACAATTCGTGATCGACGCGAACG : 3091 325 : snGluIleTyrTyrSer{Il} >>>> Target Intron 3 >>>> {e}TyrGluAla : 333 !.||||||!:! ! |||{||} 62 bp {|}|||...||| luGluIlePheGluSer{Il}++ ++{e}TyrSerAla 3092 : AGGAAATCTTCGAATCG{AT}gt.........................ag{A}TACAGCGCT : 3180 334 : SerTrpTyrAsnIleAsnProLysIleGlnAlaLeuTyrIleLeuAlaLeuArgArgSerLe : 354 ! !|||||||||! !:!! !!:!! |||:!!|||!:!:!!||||||||||||!.!!!!|| LeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeuArgAsnCysLe 3181 : TTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGTTAAGAAATTGTCT : 3243 355 : uThrProProArgLeuThrAlaGlyGlyLeuIleGluLeuAsnMetGlnSerPheSerGluV : 375 |:!! !!|||!:!:!!|||||||||||||||||| !:!!|||:!!|||||||||||||||| uSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGlnSerPheSerGluV 3244 : ATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAAAGTTTCTCAGAGG : 3306 376 : alIleLysLeuSer : 379 ||! !:::! !||| alThrArgSerSer 3307 : TAACACGTTCATCG : 3320 vulgar: AmOr113 120 379 . KQ414921.1 1602 3320 + 442 M 54 162 G 1 0 M 41 123 S 0 2 5 0 2 I 0 261 3 0 2 S 1 1 M 9 27 G 0 3 M 29 87 G 0 3 M 23 69 S 0 2 5 0 2 I 0 607 3 0 2 S 1 1 M 50 150 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1603 3320 442 + . gene_id 1 ; sequence AmOr113 ; gene_orientation + KQ414921.1 exonerate:protein2genome:local cds 1603 1889 . + . KQ414921.1 exonerate:protein2genome:local exon 1603 1889 . + . insertions 0 ; deletions 1 KQ414921.1 exonerate:protein2genome:local splice5 1890 1891 . + . intron_id 1 ; splice_site "gt" KQ414921.1 exonerate:protein2genome:local intron 1890 2154 . + . intron_id 1 KQ414921.1 exonerate:protein2genome:local splice3 2153 2154 . + . intron_id 0 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 2155 2346 . + . KQ414921.1 exonerate:protein2genome:local exon 2155 2346 . + . insertions 6 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 2347 2348 . + . intron_id 2 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 2347 2957 . + . intron_id 2 KQ414921.1 exonerate:protein2genome:local splice3 2956 2957 . + . intron_id 1 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 2958 3110 . + . KQ414921.1 exonerate:protein2genome:local exon 2958 3110 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 3111 3112 . + . intron_id 3 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 3111 3172 . + . intron_id 3 KQ414921.1 exonerate:protein2genome:local splice3 3171 3172 . + . intron_id 2 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 3173 3320 . + . KQ414921.1 exonerate:protein2genome:local exon 3173 3320 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1603 3320 442 + . alignment_id 1 ; Query AmOr113 ; Align 1603 121 162 ; Align 1765 176 123 ; Align 2156 218 27 ; Align 2186 227 87 ; Align 2276 256 69 ; Align 2959 280 150 ; Align 3174 331 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr118 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 259 -> 367 Target range: 807257 -> 807578 260 : SerPheValLeuThrValSerLeuHisThrGluGlnThrIleValLeuIleMetLysC : 279 .!!||||||!!! !|||:!!||| !|||:!!.!.!.! ||| ! !:!!!:! GlyPheValPheLeuValAlaLeuSerThrLysAspAsn---ValAlaAlaLeuArgS 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAAC---GTTGCAGCATTGAGGA : 807312 280 : ysLeuProTyrTyrIleAlaValAsnCysGluAlaPheIleLeuCysTyrThrGlyGl : 298 !!!!! ! :!:.!!:!! !:!! !!:!:!!! !..!|||.!!|||.! erPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807313 : GCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 299 : uTyrIleThrSerLysSerGluAsnIleAsnLysAlaValTyrAsnPheLeuTrpTyr : 317 . :!! !|||::!!!!|||.!.||| :!!|||!.!|||:!!! !||||||||| nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 318 : AsnLeuLysProArgAspValArgIleMetLeuMetIleIleLeuArgSerGlnLysG : 337 ..!! ! ! !!.!! !.!||| !:!:|||:!!||||||! !|||.!!.!...!! ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 338 : lnLeuThrLeuThrAlaGlyLysPheIleCysLeuSerLeuGluAlaPheAlaAsnMe : 356 ! ! !:!!|||||||||||||||:!! :!!!:!||| .!!||| !.!.!! roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 357 : tLeuLysAlaSerAlaSerTyrValSerValLeu : 367 :||||||||||||!.!||||||:!!||||||:!! eLeuLysAlaSerGlySerTyrLeuSerValMet 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATG : 807578 vulgar: AmOr118 259 367 . KQ414940.1 807257 807578 + 158 M 13 39 G 1 0 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807578 158 + . gene_id 1 ; sequence AmOr118 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807578 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807258 807578 158 + . alignment_id 1 ; Query AmOr118 ; Align 807258 260 39 ; Align 807297 274 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr115 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 295 -> 394 Target range: 807296 -> 807593 296 : ValGlyIleIlePhePheIleIleHisValIleTyrThrMetLeuHisLeuPheIleT : 315 |||!.! !:!: !.!!:!!! :!!:!: ! !:!!:!!!!.|||!:!:!!| ValAlaAlaLeuArgSerPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuT 807297 : GTTGCAGCATTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTT : 807354 316 : yrCysTyrValGlyGluThrLeuLeuGlyGlnSerThrGlyIleGlyLeuSerThrTy : 334 ||..!|||!.!|||.!.|||||| !..!!:!!!! !! !|||!.!! !:!!.!!|| yrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTy 807355 : ACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTA : 807411 335 : rHisCysAsnTrpTyrAspLeuProSerArgArgAlaValLeuLeuMetIleValIle : 353 | !!! ! !|||||| !! !! !.!!!.! !||| ! !|||:!::!::!!||| rAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIle 807412 : TGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATC : 807468 354 : ArgArgAlaAsnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuG : 373 !.!|||!.!||| ! !!!:!!::|||||||||||||||||| !|||.!.!:!||| HisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuP 807469 : CATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTT : 807528 374 : luPhePheAsnAlaValLeuLysThrSerAlaGlyTyrLeuSerValLeuLeuAlaMe : 392 !|||!!.! !:!!||||||.!!|||!.!..!||||||||||||:!! !!.!|| heThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSerValMetLysValMe 807529 : TCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAAT : 807585 393 : tLysAsp : 394 |! !||| tMetAsp 807586 : GATGGAC : 807593 vulgar: AmOr115 295 394 . KQ414940.1 807296 807593 + 165 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807297 807593 165 + . gene_id 1 ; sequence AmOr115 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807297 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807297 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807297 807593 165 + . alignment_id 1 ; Query AmOr115 ; Align 807297 296 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 304 -> 389 Target range: 807326 -> 807581 305 : IleAlaGlnLeuIleHisLeuPhePheLeuThrIleMetGlyGlnPheLeuIleAsnA : 324 :!:.!! !||||||!!.|||!:!.!!! !.!! ! !|||.!. ||| ::: ValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerA 807327 : GTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGC : 807384 325 : laAsnGluGluThrPheLysThrIleTyrGluAlaAspTrpTyrAsnGlySerSerLy : 343 !!.!||||||! ! :!!.!! !|||!!::!! !||||||..! !! !.!! ! rgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHi 807385 : GAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCA : 807441 344 : sMetGlnSerLeuTyrValLeuValLeuArgLysCysLeuSerProProLysLeuThr : 362 !!! ! !:!!|||:!!:!!!.!::! ! !|||||| !::::!!||| sAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThr 807442 : CGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACA : 807498 363 : GlyGlyGlyPheValAlaLeuAsnLeuAspSerPheValGlnIleLeuLysAlaSerP : 382 !.!||| !|||||| !!:!!|||||| !!!!||| !:!!||||||||||||||| AlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerG 807499 : GCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTG : 807558 383 : heSerTyrTyrThrValPheArg : 389 !|||||| :!!|||.!.!:! lySerTyrLeuSerValMetLys 807559 : GCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: AmOr109 304 389 . KQ414940.1 807326 807581 + 123 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807327 807581 123 + . gene_id 1 ; sequence AmOr109 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807327 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807327 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807327 807581 123 + . alignment_id 1 ; Query AmOr109 ; Align 807327 305 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr120 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 292 -> 397 Target range: 807266 -> 807581 293 : PheGlnIleSerIleAlaLeuThrGluArgSerLysPheLeuGluSerPheSerHisL : 312 |||! !:!!:!!:!:::! !! !!!:!.! ! ! |||..!|||||| !! : PheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuM 807267 : TTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGA : 807324 313 : euIleValSerLeuPheGlnLeuLeuLeuPheCysPheProGlyAspIleLeuIleAr : 331 !!:!:..!! !|||.!!||||||! !|||!:!..!!:! !!|||:!!! !||| etValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSe 807325 : TGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTC : 807381 332 : gGlnSerPheAsnIleSerIleAlaAlaTyrSerMetGlnTrpTyrGlnLeuProThr : 350 !!:!!!! .!.|||:!! !|||||||||..! ! ||||||!::! !! ! ! rArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGly 807382 : GCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGG : 807438 351 : PheIleLysAspGluIleCysMetIleIleLeuArgSerGlnArgProSerPheIleT : 370 ! ! !!::!! !:!!||||||! !|||.!!.!. !|||! ! !|||| HisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleT 807439 : CACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAA : 807498 371 : hrAlaGlyLysLeuTyrIleMetHisLeuGluAsnPheThrAlaIleLeuSerThrAl : 389 |||||||||||!!! ! |||:!!||| !.!|||! !! !||||||!.!.!!:! hrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSe 807499 : CAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTC : 807555 390 : aPheSerTyrPheMetMetLeuGln : 397 ! !||||||.!. :!::!!:!! rGlySerTyrLeuSerValMetLys 807556 : TGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: AmOr120 292 397 . KQ414940.1 807266 807581 + 134 M 105 315 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807267 807581 134 + . gene_id 1 ; sequence AmOr120 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807267 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807267 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807267 807581 134 + . alignment_id 1 ; Query AmOr120 ; Align 807267 293 315 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr114 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 304 -> 397 Target range: 807314 -> 807593 305 : LeuValTyrValPheTyrValMetLeuGlnLeuTyrLeuTyrCysTyrValGlyGluA : 324 !!!||| :!! ! !:!!:!!:!!|||||||||||||||..!|||!.!|||.!.! PheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnT 807315 : TTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACA : 807372 325 : rgLeuSerValGluSerMetGluIleValAsnAlaAlaTyrAsnThrGluTrpTyrTh : 343 !|||..! !..!!!! ||||||!.!.!.|||||||||:!!:!! |||||| hrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrAr 807373 : CACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCG : 807429 344 : rLeuProThrAsnIleThrLysMetLeuIleIleValMetCysArgAlaLysSerPro : 362 !! !! ! !:!! !.!!!:! |||:!!:!::!!!!: !|||!.!!!.|||||| gCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerPro 807430 : TTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCT : 807486 363 : LeuThrValThrAlaGlyArgPheCysSerPheThrLeuGlnLeuPheSerGluValL : 382 ! ! !:!!|||||||||!:!||| ! !!.!.!.!||| !|||!.!|||:!!| TyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleL 807487 : TATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATAC : 807546 383 : euLysThrSerMetArgTyrLeuSerValLeuTyrAlaValLysAsp : 397 |||||.!!||| !||||||||||||:!! ! !.!:!!! !||| euLysAlaSerGlySerTyrLeuSerValMetLysValMetMetAsp 807547 : TGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: AmOr114 304 397 . KQ414940.1 807314 807593 + 175 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807315 807593 175 + . gene_id 1 ; sequence AmOr114 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807315 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807315 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807315 807593 175 + . alignment_id 1 ; Query AmOr114 ; Align 807315 305 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 121 -> 216 Target range: 32464 -> 32749 122 : PhePheCysSerPheTyrGluValSerIleTyrSerCysGlyPheMetPheLeuSerMet : 141 |||||| .!! ! !! !! !:!!|||! ! ! !||| !:! !! !:!! PhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIleVal 32465 : ttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATAGTG : 32522 142 : ProSerIleProLeuIleMetAsnValIleMetProLeuAsnGluSerArgSerArgGlu : 161 ! !! !:!:|||! !|||!!::!!|||||| !|||||||||||||||||| !!.!! ! GlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHisVal 32523 : CAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTA : 32582 162 : LeuValTyrProSerTyrTyrPheValAspGluGlnLysTyrTyrTyrLeuIleThrGly : 181 ||| !||| !!.!! ! ||||||||||||:::|||||||||::: !|||.!! ! LeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeu 32583 : CTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTG : 32642 182 : HisMetLeuAlaValCysLeuGlyHisValPheValTyrIleAlaCysAspIleAsnLeu : 201 |||||||||!.!..! ! ! ! !:!! ||| !! ||| ||| ... HisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePhe 32643 : CACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttc : 32702 202 : IleHisValValHisHisGlyCysAlaLeuLeuThrIleSerGly : 216 ||| ::! !|||! !|||||| !!!!!.!||| !||| IlePhePheMetPheHisValCysAlaLysPheAsnIleLeuGly 32703 : atattcttcatGTTCCACGTTTGCGCCAAATTCAATATTCTCGGG : 32749 vulgar: AmOr107 121 216 . KQ415081.1 32464 32749 + 139 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32465 32749 139 + . gene_id 1 ; sequence AmOr107 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32465 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32465 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32465 32749 139 + . alignment_id 1 ; Query AmOr107 ; Align 32465 122 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 129 -> 216 Target range: 32488 -> 32749 130 : MetValTyrSerCysAlaPheMetPheLeuValIleProThrIleProProIleLeuAsn : 149 .!.||||||! ! ! !||| !:! !:!!:!:! ! !:!:||| !|||:!!:!! PheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAsp 32489 : TTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGAC : 32546 150 : IleValAlaProLeuAsnValSerArgSerArgGluPheIleTyrProThrTyrTyrPhe : 169 :!::!!||||||||||||! !|||||| !!.!! !.!. ||| !! ! ! |||||| ValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPhe 32547 : GTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTC : 32606 170 : ValAspGluGlnLysTyrTyrTyrProIleLeuThrHisMetIleAlaValIleLeuVal : 189 ||||||:::|||||||||::: |||||| ! !||||||:!!!.!..!:!! !:!! ValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeu 32607 : GTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTT : 32666 190 : LeuSerSerValTyrLeuAlaCysAspThrAsnLeuValGlnIleValHisHisGlyCys : 209 ! !!!!||| ! !||| |||::: ...::: ...::! !|||! !||| GlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCys 32667 : GGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGC : 32726 210 : AlaLeuLeuAlaIleSerGly : 216 ||| !!!! !||| !||| AlaLysPheAsnIleLeuGly 32727 : GCCAAATTCAATATTCTCGGG : 32749 vulgar: AmOr109 129 216 . KQ415081.1 32488 32749 + 154 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32489 32749 154 + . gene_id 1 ; sequence AmOr109 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32489 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32489 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32489 32749 154 + . alignment_id 1 ; Query AmOr109 ; Align 32489 130 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 129 -> 216 Target range: 32488 -> 32749 130 : IleValIlePheSerAlaIleMetPheIleMetIleProThrIleProProIleLeuAsn : 149 .!!||| !.!!.!! !.!! !:! !!!::!:! ! !:!:||| !|||:!!:!! PheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAsp 32489 : TTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGAC : 32546 150 : IleIleMetProLeuAsnGluSerArgAspArgGluPheIleTyrProThrTyrPhePhe : 169 :!:||| !|||||||||||||||||| !!!.!! !.!. ||| !! ! ! !:!||| ValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPhe 32547 : GTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTC : 32606 170 : IleAspGluGluLysTyrTyrTyrProIleLeuThrTyrMetAlaThrValIleLeuIle : 189 :!!|||::::::||||||::: |||||| ! !:!!||| ! !..!:!! !:!! ValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeu 32607 : GTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTT : 32666 190 : ValSerSerValTyrLeuAlaCysAspThrAsnLeuValGlnIleValHisHisGlyCys : 209 ! ! !!!!||| ! !||| |||::: ...::: ...::! !|||! !||| GlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCys 32667 : GGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGC : 32726 210 : AlaLeuLeuAlaIleSerGly : 216 ||| !!!! !||| !||| AlaLysPheAsnIleLeuGly 32727 : GCCAAATTCAATATTCTCGGG : 32749 vulgar: AmOr108 129 216 . KQ415081.1 32488 32749 + 129 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32489 32749 129 + . gene_id 1 ; sequence AmOr108 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32489 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32489 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32489 32749 129 + . alignment_id 1 ; Query AmOr108 ; Align 32489 130 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 300 Query range: 120 -> 332 Target range: 178 -> 1693 121 : SerPheLeuAlaMetPheTyrPheIleAsnAlaTyrCysCysSerLeuLeuPheLeuGlnVa : 141 !!!!:!:!!!.!! !:!! .!.:!:|||||| ! !||| !:!!||||||:!!..!.. ThrTyrIleValLysTyrSerIleValAsnAlaIleValCysValIleLeuPheValSerTh 179 : ACGTACATTGTCAAATATTCGATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGAC : 239 142 : lProTrpThrAlaArgLeuLeuTyrMetIleLysSerGlnAsnThrSerProProMetLeuT : 162 !||| !||| !!!.!:!!||| !!!!::!! ! !!:!!||| !|||! ! !:!: !| rProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaT 240 : GCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGT : 302 163 : yrValIleProGlyTyrTyrPheValAspAspAspArgAspTyrTyrTyrPheIleGlnLeu : 182 ||:!! !|||!.!|||||||||..!|||!!: !!!:! ||| !! !:!||| ! yrIleTyrProAlaTyrTyrPheThrAspGluHisLys---TyrAspValTyrIleIleThr 303 : ACATTTACCCGGCCTATTATTTCACCGACGAGCATAAG---TACGACGTGTACATAATTACG : 359 183 : HisMetSerLeuSerIleIleMetValAlaAsnValTyrValAlaTyrAspThrCysTyrMe : 203 ||||||:!!! ! !|||:!::!!||| ! !!|||||| !!|||! !|||||| !!|||!! HisMetAlaSerValIleLeuValValPheTyrValTyrPheAlaCysAspThrSerTyrIl 360 : CACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACAT : 422 204 : tValPheValGlnHisValCysGlyLeuLeuAlaValAla{Gl} >>>> Target Intr : 217 : ! !!|||||||||! !||||||||||||||||||:!!{||} 265 bp eTyrValValGlnHisGlyCysGlyLeuLeuAlaValSer{Gl}++ 423 : ATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCC{GG}gt................ : 468 218 : on 1 >>>> {y}TyrArgPheLysHisAlaIleAspAsp<->SerAlaSerLysAsnSer : 232 {|}||||||!:!||| !||||||! !!: |||::! !!|||!..!:! ++{y}TyrArgTyrLysCysAlaIleValGluLeuSerSerArgLysArgAsn 469 : .........ag{A}TATCGTTACAAATGTGCGATCGTGGAATTGTCCAGTCGGAAAAGGAAC : 777 233 : GluGluLysIleLysGluThrCysLysLysIleArgSerSerIleGlnGlyHisGluGlyAl : 253 ...! ! ! ! |||! !! !!:!!:!:!: !! !|||||||||||||||:!! !|| SerValThrGlnAspGluIleTyrArgArgValCysHisSerIleGlnGlyHisGlnHisAl 778 : AGTGTCACGCAGGATGAAATTTATAGAAGAGTGTGTCATTCGATTCAAGGACACCAGCATGC : 840 254 : aIleArg<->TyrLeuLysLysIleGluAspThrHisValAsnLeuLeuPheIleSerLeuG : 273 ||||!:! ||||||||||||...... :::|||:::||| ... . aIleLysSerValLeuLysLysIleArgGlnIleValLeuAsnValLeuCysPhePheSerS 841 : TATAAAGtcggtattaaaaaagattcgtcaaattgttttaaatgttctttgctttttttctA : 903 274 : lyLeuIleIleMetCysPheSerIleThrLeuLeuLys >>>> Target Intron 2 > : 286 !!:!!:!!:!! !||| ! ||||||... 611 bp erMetLeuLeuSerCysProArgAspPheLeuLeuSer-+ 904 : GCATGTTACTATCGTGCCCGCGggattttcttctctcgtt...................... : 944 287 : >>> ValValThrMetAspTyrCysLeuAspPheTyrLysTyrSerSerPheLeuIleVal : 304 ||| !!.! !!!: ! ! !!!:||| !||| !!!!!!!!|||:!!!!::!! ++ValSerAsnSerGluIleAsnAlaGluPheThrLysAspCysThrPheIleMetIle 945 : ...agGTGTCGAACTCGGAGATTAACGCGGAGTTTACCAAGGATTGCACATTTATCATGATT : 1607 305 : GlnLeuMetHisLeuCysTyrValMetIleGlnGlyGlnPheValIleAspSerCysAsnGl : 325 ||||||:!:|||:!! !|||:!!! :!!|||||||||||||||||||||:!! !.!.|| GlnLeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAspAlaAsnGluGl 1608 : CAATTGGTACACATACTTTATCTAACTCTTCAAGGACAATTCGTGATCGACGCGAACGAGGA : 1670 326 : uIleTyrTyrSerIleTyrGlu : 332 ||||!:! ! |||!!:!! ||| uIlePheGluSerMet***Glu 1671 : AATCTTCGAATCGATGTAAGAA : 1693 vulgar: AmOr113 120 332 . LHQN01023902.1 178 1693 + 300 M 54 162 G 1 0 M 41 123 S 0 2 5 0 2 I 0 261 3 0 2 S 1 1 M 9 27 G 0 3 M 29 87 G 0 3 M 30 90 5 0 2 I 0 607 3 0 2 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 179 1693 300 + . gene_id 1 ; sequence AmOr113 ; gene_orientation + LHQN01023902.1 exonerate:protein2genome:local cds 179 465 . + . LHQN01023902.1 exonerate:protein2genome:local exon 179 465 . + . insertions 0 ; deletions 1 LHQN01023902.1 exonerate:protein2genome:local splice5 466 467 . + . intron_id 1 ; splice_site "gt" LHQN01023902.1 exonerate:protein2genome:local intron 466 730 . + . intron_id 1 LHQN01023902.1 exonerate:protein2genome:local splice3 729 730 . + . intron_id 0 ; splice_site "AG" LHQN01023902.1 exonerate:protein2genome:local cds 731 941 . + . LHQN01023902.1 exonerate:protein2genome:local exon 731 941 . + . insertions 6 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local splice5 942 943 . + . intron_id 2 ; splice_site "tt" LHQN01023902.1 exonerate:protein2genome:local intron 942 1552 . + . intron_id 2 LHQN01023902.1 exonerate:protein2genome:local splice3 1551 1552 . + . intron_id 1 ; splice_site "AG" LHQN01023902.1 exonerate:protein2genome:local cds 1553 1693 . + . LHQN01023902.1 exonerate:protein2genome:local exon 1553 1693 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 179 1693 300 + . alignment_id 1 ; Query AmOr113 ; Align 179 121 162 ; Align 341 176 123 ; Align 732 218 27 ; Align 762 227 87 ; Align 852 256 90 ; Align 1553 286 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 255 Query range: 128 -> 238 Target range: 202 -> 532 129 : ValIleValIlePheSerAlaIleMetPheIleMetIleProThrIleProProIleLeuAsnI : 150 |||! !!.!||| !!!!!!.!|||:!!|||:!: !! |||..!! !|||! !||||||:!!| ValAsnAlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspI 203 : GTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACA : 266 151 : leIleMetProLeuAsnGluSerArgAspArgGluPheIleTyrProThrTyrPhePheIleAs : 171 ||:!!:!:||| !||||||||||||||| !! !!:!|||||||||.!!|||!:!|||! !|| leLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAs 267 : TTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGA : 329 172 : pGluGluLysTyrTyrTyrProIleLeuThrTyrMetAlaThrValIleLeuIleValSerSer : 192 ||||.!.|||||| !! !|||:!!|||:!!||||||:!!|||||||||:!:|||! !! ! pGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyr 330 : CGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTAC : 392 193 : ValTyrLeuAlaCysAspThrAsnLeuValGlnIleValHisHisGlyCysAlaLeuLeuAlaI : 214 ||||||!!!||||||||||||!:!! !:!! ! :!!|||!!.|||||||||!.!|||||||||: ValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaV 393 : GTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCG : 458 215 : leSerGlyTyrHisPheLysHisAlaValAspAspMetLysPheSerAsnGlyAsnTyrIleAs : 235 !:|||||| ...::: ... ! :!:!!. !! !!:!!.!||| ! ||||| alSerGly***LysIleArgSerAsnAspSer***LeuAsnProPheSerAlaAsnLysIleAs 459 : TGTCCGGgtaaaaaattcgatcgaacgattCGTAGCTCAACCCTTTCAGTGCCAACAAAATCGA : 521 236 : pLeuLeuMet : 238 | !|||!!: pThrLeuIle 522 : TACGCTAATT : 532 vulgar: AmOr108 128 238 . LHQN01023902.1 202 532 + 255 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 203 532 255 + . gene_id 1 ; sequence AmOr108 ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 203 532 . + . LHQN01023902.1 exonerate:protein2genome:local exon 203 532 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 203 532 255 + . alignment_id 1 ; Query AmOr108 ; Align 203 129 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 276 -> 334 Target range: 1519 -> 1693 277 : IleValLeuAlaPheThrGlyThrPheLeuLysLeuSerThrMetGluIleGluIleArgPh : 297 :!::!!:!! ! ||| !:!!!:: !:!!:!!|||!.! !||||||.!. ..!|| LeuIleIleLeuLysThrIleSerTrpLysGlnValSerAsnSerGluIleAsnAlaGluPh 1520 : CTGATCATCCTCAAAACAATTTCTTGGAAACAGGTGTCGAACTCGGAGATTAACGCGGAGTT : 1580 298 : ePheThrPheCysGlyTyrThrValAlaGlnLeuThrHisLeuPhePheLeuThrIleMetG : 318 | !! ! !||| !!:!! !:!! !||||||..!|||:!!.!!!:!||||||:!!...| eThrLysAspCysThrPheIleMetIleGlnLeuValHisIleLeuTyrLeuThrLeuGlnG 1581 : TACCAAGGATTGCACATTTATCATGATTCAATTGGTACACATACTTTATCTAACTCTTCAAG : 1643 319 : lyGlnPheLeuIleAsnAlaAsnAspGluIlePheAsnThrIleTyrGlu : 334 ||||||||:!!|||:!!||||||!!:|||||||||.!.:!!!!:!! ||| lyGlnPheValIleAspAlaAsnGluGluIlePheGluSerMet***Glu 1644 : GACAATTCGTGATCGACGCGAACGAGGAAATCTTCGAATCGATGTAAGAA : 1693 vulgar: AmOr108 276 334 . LHQN01023902.1 1519 1693 + 112 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 1520 1693 112 + . gene_id 2 ; sequence AmOr108 ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 1520 1693 . + . LHQN01023902.1 exonerate:protein2genome:local exon 1520 1693 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 1520 1693 112 + . alignment_id 2 ; Query AmOr108 ; Align 1520 277 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 221 Query range: 121 -> 216 Target range: 181 -> 466 122 : PhePheCysSerPheTyrGluValSerIleTyrSerCysGlyPheMetPheLeuSerMetProS : 143 !:!.!! !!.!!:!! !|||!:! ! !|||! !.!!:!!|||:!!|||! !||| TyrIleValLysTyrSerIleValAsnAlaIleValCysValIleLeuPheValSerThrProV 182 : TACATTGTCAAATATTCGATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGG : 245 144 : erIleProLeuIleMetAsnValIleMetProLeuAsnGluSerArgSerArgGluLeuValTy : 164 !! !|||! !|||:!!:!!:!!:!!:!:||| !||||||||||||..! !! !! !:!!|| alThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTy 246 : TGACACCGCATATTTTGGACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTA : 308 165 : rProSerTyrTyrPheValAspGluGlnLysTyrTyrTyrLeuIleThrGlyHisMetLeuAla : 185 ||||:!!|||||||||..!||||||!!.|||||| !! ! !|||! ! !|||||| !:!! rProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSer 309 : CCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCC : 371 186 : ValCysLeuGlyHisValPheValTyrIleAlaCysAspIleAsnLeuIleHisValValHisH : 207 ||| !|||! ! !!!:!||||||.!!|||||||||! !!:!! !|||:!!||||||!!.| ValIleLeuValValPheTyrValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnH 372 : GTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAAC : 437 208 : isGlyCysAlaLeuLeuThrIleSerGly : 216 ||||||||!.!||||||.!!:!:|||||| isGlyCysGlyLeuLeuAlaValSerGly 438 : ACGGCTGCGGATTGTTGGCCGTGTCCGGg : 466 vulgar: AmOr107 121 216 . LHQN01023902.1 181 466 + 221 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 182 466 221 + . gene_id 1 ; sequence AmOr107 ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 182 466 . + . LHQN01023902.1 exonerate:protein2genome:local exon 182 466 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 182 466 221 + . alignment_id 1 ; Query AmOr107 ; Align 182 122 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 276 -> 332 Target range: 1519 -> 1687 277 : IleIleValThrPheThrGlyThrPheIleLysLeuThrSerMetGluIleGlyGlyArgPh : 297 :!:|||:!! ! ||| !:!!!::! !:!!:!!:!!!:! !||||||..!!.!..!|| LeuIleIleLeuLysThrIleSerTrpLysGlnValSerAsnSerGluIleAsnAlaGluPh 1520 : CTGATCATCCTCAAAACAATTTCTTGGAAACAGGTGTCGAACTCGGAGATTAACGCGGAGTT : 1580 298 : ePheThrPheCysThrPheThrIleGlyGlnLeuThrHisLeuLeuPheLeuMetValMetG : 318 | !! ! !|||||||||! !!!: !||||||..!|||:!!|||!:!|||! :!!...| eThrLysAspCysThrPheIleMetIleGlnLeuValHisIleLeuTyrLeuThrLeuGlnG 1581 : TACCAAGGATTGCACATTTATCATGATTCAATTGGTACACATACTTTATCTAACTCTTCAAG : 1643 319 : lyGlnPheLeuIleAspSerAsnGluGluValPheLysThrIle : 332 ||||||||:!!||||||:!!|||||||||:!!|||:!!:!!!!: lyGlnPheValIleAspAlaAsnGluGluIlePheGluSerMet 1644 : GACAATTCGTGATCGACGCGAACGAGGAAATCTTCGAATCGATG : 1687 vulgar: AmOr107 276 332 . LHQN01023902.1 1519 1687 + 120 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 1520 1687 120 + . gene_id 2 ; sequence AmOr107 ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 1520 1687 . + . LHQN01023902.1 exonerate:protein2genome:local exon 1520 1687 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 1520 1687 120 + . alignment_id 2 ; Query AmOr107 ; Align 1520 277 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 239 Query range: 133 -> 216 Target range: 217 -> 466 134 : CysAlaPheMetPheLeuValIleProThrIleProProIleLeuAsnIleValAlaProLeuA : 155 |||!.!.!!:!!|||:!! !! |||..!! !|||! !||||||:!!|||:!! !||| !| CysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProLysA 218 : TGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAAA : 281 156 : snValSerArgSerArgGluPheIleTyrProThrTyrTyrPheValAspGluGlnLysTyrTy : 176 ||! !||||||..! !! !!:!|||||||||.!!|||||||||..!||||||!!.|||||| ! snGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAs 282 : ACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGA : 344 177 : rTyrProIleLeuThrHisMetIleAlaValIleLeuValLeuSerSerValTyrLeuAlaCys : 197 ! !|||:!!||||||||| :!!||||||||||||:!!! !! !||||||!!!|||||| pValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrPheAlaCys 345 : CGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGT : 407 198 : AspThrAsnLeuValGlnIleValHisHisGlyCysAlaLeuLeuAlaIleSerGly : 216 ||||||!:!! !:!! ! :!!|||!!.|||||||||!.!|||||||||:!:|||||| AspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly 408 : GACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGg : 466 vulgar: AmOr109 133 216 . LHQN01023902.1 217 466 + 239 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 218 466 239 + . gene_id 1 ; sequence AmOr109 ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 218 466 . + . LHQN01023902.1 exonerate:protein2genome:local exon 218 466 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 218 466 239 + . alignment_id 1 ; Query AmOr109 ; Align 218 134 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 248 Query range: 125 -> 240 Target range: 4969 -> 5314 126 : PheTyrGluValIleValIlePheSerAlaIleMetPheIleMetIleProThrIleProPr : 146 ||| ! !||| !:!! !!.!!!||| !:!:|||!!: :!:||| !:!: !!|| PheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerPr 4970 : TTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCC : 5030 147 : oIleLeuAsnIleIleMetProLeuAsnGluSerArgAspArgGluPheIleTyrProThrT : 167 |||||||:!!|||:!!|||||||||||||||!!!|||! ||| !|||:!!||||||.!!| oIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaT 5031 : GATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTT : 5093 168 : yrPhePheIleAspGluGluLysTyrTyrTyrProIleLeuThrTyrMetAlaThrValIle : 187 ||!:!|||:!!||||||!!:||||||:!!||| !|||:!! !:!!||| ! !|||:!: yrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValVal 5094 : ACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTG : 5153 188 : LeuIleValSerSerValTyrLeuAlaCysAspThrAsnLeuValGlnIleValHisHisGl : 208 :!!!!::!!! !||||||!:!! !|||||||||.!!|||! !||| ! !|||!!.|||!. ValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAl 5154 : GTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGC : 5216 209 : yCysAlaLeuLeuAlaIleSerGlyTyrHisPheLysHisAlaValAspAspMetLysPheS : 229 !|||!.!||||||||||||:!!|||!! !!:!! !:!! !!:! ||| aCysGlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGluAsnGlyPheL 5217 : TTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAATGGTTTTC : 5279 230 : erAsnGlyAsnTyrIleAspLeuLeuMetAspGlu : 240 ! !! !!|||!:!:!!! !!!!! !:!:! !||| euTyrArgAsnPheValGlyPheCysLeuAlaGlu 5280 : TTTATAGAAATTTCGTTGGCTTTTGTTTAGCTGAA : 5314 vulgar: AmOr108 125 240 . LHQN01025741.1 4969 5314 + 248 M 115 345 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4970 5314 248 + . gene_id 1 ; sequence AmOr108 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4970 5314 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4970 5314 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4970 5314 248 + . alignment_id 1 ; Query AmOr108 ; Align 4970 126 345 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 241 Query range: 302 -> 378 Target range: 9078 -> 9419 303 : TyrThrValAlaGlnLeuThrHisLeuPhePheLeuThrIleMetGlyGlnPheLeuIleAs : 323 !:! !|||!.!||| ! !|||:!!|||||||||!.!:!!..!|||||||||:!!||||| PhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGlnGlyGlnPheValIleAs 9079 : TTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGGACAATTTGTGATAAA : 9139 324 : nAlaAsnAspGluIlePheAsnThr{Il} >>>> Target Intron 1 >>>> {e}T : 333 |||| !||||||:!:!:!:!!! !{||} 113 bp {|}| nAlaPheAspGluLeuTyrAspLys{Il}++ ++{e}T 9140 : CGCGTTCGACGAACTGTACGACAAG{AT}gt.........................ag{A}T : 9282 334 : yrGluAlaHisTrpTyrAsnGlySerSerArgThrGlnSerLeuTyrValLeuValLeuArg : 353 |||||:!!!!.||||||||| !!!! !!|||||||||:!!||||||||||||!.!|||||| yrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeuArg 9283 : ACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTGAGA : 9342 354 : LysCysLeuAsnProProThrLeuThrGlyGlyGlyLeuIleValLeuAsnLeuAspSerPh : 374 !..||||||||||||||| !||||||!.!||||||:!!! ..!||||||||| ||||| SerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSerPh 9343 : AGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATCGTT : 9405 375 : eValGlnIleLeu : 378 |!.!:!!:!::!! eAlaGluValIle 9406 : CGCAGAGGTGATT : 9419 vulgar: AmOr108 302 378 . LHQN01025741.1 9078 9419 + 241 M 29 87 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 9079 9419 241 + . gene_id 2 ; sequence AmOr108 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 9079 9167 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9079 9167 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 9168 9169 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 9168 9280 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 9279 9280 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 9281 9419 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9281 9419 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 9079 9419 241 + . alignment_id 2 ; Query AmOr108 ; Align 9079 303 87 ; Align 9282 333 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 186 Query range: 117 -> 233 Target range: 11438 -> 11786 118 : ArgArgAlaThrThrLeuCysIlePheTyrGluValIleValIlePheSerAlaIleMet : 137 :::::: !.!!|||||| ! !:! !|||! !!.! !.!!!!!:!!.!!:!! LysGlnLeuAlaThrLeuAspTrpThrPheProValAsnAlaTyrIleCysSerPheLeu 11439 : aaacaattAGCAACTCTCGATTGGACATTTCCAGTGAACGCGTACATTTGCTCGTTCTTG : 11496 138 : PheIleMetIleProThrIleProProIleLeuAsnIleIleMetProLeuAsnGluSer : 157 ||||||...:!:||| !! !!! !:!::!!||| !! ! !!! !||| !!!! PheIleGlnValProTrpThrThrArgLeuValAsnSerTyrLysThrGlnAsnIleThr 11497 : TTCATACAAGTGCCATGGACGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACG : 11556 158 : ArgAspArgGluPheIleTyrProThrTyrPhePheIleAspGluGluLysTyrTyrTyr : 177 ! !..! !:!!|||:!! ||| !|||!:!|||:!!||||||! !:!!||||||||| ProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyrTyr 11557 : CCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTAT : 11616 178 : ProIleLeuThrTyrMetAlaThrValIleLeuIleValSerSerValTyrLeuAlaCys : 197 !|||:!! !:!! .!! !..!:!!||||||||| ! !||||||! !|||||| TyrIleIleLeuHisGlyThrCysThrValLeuIleValValValValTyrCysAlaCys 11617 : TACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 11676 198 : AspThrAsnLeuValGlnIleValHisHisGlyCysAlaLeuLeuAlaIleSerGlyTyr : 217 ||||||!:!! !:!! !:!:|||!!.||| !|||!.!|||!!!|||:!::!!|||! AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly*** 11677 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGGTGA : 11736 218 : HisPheLysHisAlaValAspAspMetLysPheSerAsnGlyAsnTyr : 233 .!. ! !... ... :::...||||||:::||||||||| GluAsnLeuArgAspThrPhePheLeuSerPheSerSerGlyAsnTyr 11737 : GAAAACTTGAGagatacattttttctctcattttcgtCGGGAAATTAT : 11786 vulgar: AmOr108 117 233 . LHQN01025741.1 11438 11786 + 186 M 116 348 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11439 11786 186 + . gene_id 3 ; sequence AmOr108 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11439 11786 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11439 11786 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11439 11786 186 + . alignment_id 3 ; Query AmOr108 ; Align 11439 118 348 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 325 -> 377 Target range: 2536 -> 2692 326 : AspGluIlePheAsnThrIleTyrGluAlaHisTrpTyrAsnGlySerSerArgThrGlnSe : 346 .!.|||:!:||| ! !! !|||...||| ! |||||||||.!!||| !!|||||||||!! GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGlnTh 2537 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAAAC : 2597 347 : rLeuTyrValLeuValLeuArgLysCysLeuAsnProProThrLeuThrGlyGlyGlyLeuI : 367 !||||||||||||!.!||||||!:! !!|||!.!|||||| !||||||!.!|||||||||| rLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGlyLeuI 2598 : TCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGA : 2660 368 : leValLeuAsnLeuAspSerPheValGlnIle : 377 || !|||||||||!!:!!!|||!.!:!!:!! leSerLeuAsnLeuGluThrPheAlaGluVal 2661 : TTTCCTTGAATTTGGAGACTTTTGCCGAGGTA : 2692 vulgar: AmOr108 325 377 . LHQN01025741.1 2536 2692 + 160 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 2537 2692 160 + . gene_id 4 ; sequence AmOr108 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 2537 2692 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2537 2692 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 2537 2692 160 + . alignment_id 4 ; Query AmOr108 ; Align 2537 326 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 332 -> 377 Target range: 6187 -> 6322 333 : TyrGluAlaHisTrpTyrAsnGlySerSerArgThrGlnSerLeuTyrValLeuValLeuAr : 353 ||||||:!! |||||||||..!|||!!!!:!||||||:!!||||||:!!|||!.!||||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeuAr 6188 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTACG : 6248 354 : gLysCysLeuAsnProProThrLeuThrGlyGlyGlyLeuIleValLeuAsnLeuAspSerP : 374 |!.. !!|||||||||||| !||||||!.!||||||!!!|||..!||||||||| ! !!!| gSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLysThrP 6249 : GAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAGACCT : 6311 375 : heValGlnIle : 377 || !:!!:!! heSerGluVal 6312 : TCTCAGAGGTA : 6322 vulgar: AmOr108 332 377 . LHQN01025741.1 6187 6322 + 148 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 6188 6322 148 + . gene_id 5 ; sequence AmOr108 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 6188 6322 . + . LHQN01025741.1 exonerate:protein2genome:local exon 6188 6322 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 6188 6322 148 + . alignment_id 5 ; Query AmOr108 ; Align 6188 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 323 -> 377 Target range: 12775 -> 12937 324 : AlaAsnAspGluIlePheAsnThrIleTyrGluAlaHisTrpTyrAsnGlySerSerArg : 343 .!!..!|||!!:! ! !.!:!!! !||||||:!! ||||||!...!!||||||!:! ThrArgAspAspAsnGluThrSerArgTyrGluSerLeuTrpTyrThrSerSerSerLys 12776 : ACACGCGATGATAATGAAACTTCCAGATACGAATCATTATGGTACACAAGTTCTTCGAAA : 12833 344 : ThrGlnSerLeuTyrValLeuValLeuArgLysCysLeuAsnProProThrLeuThrGly : 363 ||||||:!!|||||||||:!!!.!||||||!:! !|||!..||| !! !||||||!.! ThrGlnAlaLeuTyrValValAlaLeuArgArgAsnLeuThrProThrCysLeuThrAla 12834 : ACACAAGCATTATACGTGGTAGCGTTACGAAGAAACCTAACACCTACCTGTTTAACGGCT : 12893 364 : GlyGlyLeuIleValLeuAsnLeuAspSerPheValGlnIle : 377 |||||||||:!: !||||||:!!! ||||||:!!:!!:!! GlyGlyLeuValGlnLeuAsnMetAlaSerPheLeuGluVal 12894 : GGCGGTTTAGTGCAACTGAACATGGCAAGTTTCTTGGAGGTA : 12937 vulgar: AmOr108 323 377 . LHQN01025741.1 12775 12937 + 134 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 12776 12937 134 + . gene_id 6 ; sequence AmOr108 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 12776 12937 . + . LHQN01025741.1 exonerate:protein2genome:local exon 12776 12937 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 12776 12937 134 + . alignment_id 6 ; Query AmOr108 ; Align 12776 324 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 0 -> 54 Target range: 4356 -> 4518 1 : MetAsnLysGlnAlaIleGluAspGlnTyrLeuArgIleAsnLysPhePheGlyGlnLeuVa : 21 |||:!! ! .!!:!!||| ! !::|||||||||||||||||| .!!|||..!|||.. MetAspAlaIleThrLeuGluLysArgTyrLeuArgIleAsnLysLysLeuGlyMetLeuTh 4357 : ATGGATGCGATCACGTTAGAGAAACGTTACTTGAGAATCAACAAGAAGCTCGGCATGCTAAC : 4417 22 : lGlyValTrpProTyrGlnGluArgPheThrLysPheCysIleArgLeuThrIlePheAlaI : 42 !||||||||||||||||||:!!!!!! !!|||!:: !! !||| !..!:!:.!! !: rGlyValTrpProTyrGlnLysSerSerProLysTrpIleSerArgThrValValLeuPheV 4418 : CGGTGTGTGGCCCTATCAAAAGAGCTCGCCAAAATGGATCAGTCGAACGGTAGTGCTCTTTG : 4480 43 : leIleIleLeuThrLeuThrThrGlnIleTyrGlnVal : 54 !:||||||! ! !! !..!||||||:!! ! :!!:!! alIleIleProCysTyrValThrGlnValGluLysIle 4481 : TGATAATACCTTGTTATGTTACACAGGTAGAAAAAATA : 4518 vulgar: AmOr108 0 54 . LHQN01025741.1 4356 4518 + 113 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4357 4518 113 + . gene_id 7 ; sequence AmOr108 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4357 4518 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4357 4518 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4357 4518 113 + . alignment_id 7 ; Query AmOr108 ; Align 4357 1 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 643 Query range: 128 -> 389 Target range: 11471 -> 13062 129 : IleAsnAlaTyrCysCysSerLeuLeuPheLeuGlnValProTrpThrAlaArgLeuLeu : 148 :!:||||||||| !||||||!!!||||||:!!|||||||||||||||.!!||||||:!! ValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArgLeuVal 11472 : GTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGATTGGTG : 11529 149 : TyrMetIleLysSerGlnAsnThrSerProProMetLeuTyrValIleProGlyTyrTyr : 168 !! ! !|||!!!||||||! !!!!||| !:!!! !!:!|||||||||||||||||| AsnSerTyrLysThrGlnAsnIleThrProSerLeuGlnPheValIleProGlyTyrTyr 11530 : AACTCGTACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGATATTAC : 11589 169 : PheValAspAspAspArgAspTyrTyrTyrPheIleGlnLeuHisMetSerLeuSerIle : 188 |||||| |||!!: !!!:|||||||||!:!||| !|||||| !!!! !!!!:!! PheVal---AspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrVal 11590 : TTCGTC---GACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTT : 11646 189 : IleMetValAlaAsnValTyrValAlaTyrAspThrCysTyrMetValPheValGlnHis : 208 :!:!!:|||!.! |||||| !|||! !|||||| !!|||||||||.!.||||||||| LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 11647 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 11706 209 : ValCysGlyLeuLeuAlaValAla{Gl} >>>> Target Intron 1 >>>> {y} : 217 ..!|||||||||!!!|||||||||{||} 79 bp {|} ThrCysGlyLeuPheAlaValAla{Gl}++ ++{y} 11707 : ACTTGCGGACTGTTCGCCGTGGCC{GG}gt.........................ag{A} : 11814 218 : TyrArgPheLysHisAlaIleAspAspSerAlaSer<-><-><->LysAsnSerGluGlu : 234 ||||||||||||:!!:!!:!! !!!:..! !||| ||| !!! !!!:.!. TyrArgPheLysAsnSerValArgGluAspAsnSerValLysGlyLysTyrPheAspHis 11815 : TACCGCTTCAAAAATTCAGTTCGCGAGGACAATAGCGTGAAGGGGAAGTATTTCGACCAC : 11872 235 : LysIleLysGluThrCysLysLysIleArgSerSerIleGlnGlyHisGluGlyAlaIle : 254 !! ||||||.!!! !|||!!. !!! !|||||||||||||||:!! !!|||||| TrpThrLysGluAlaTyrLysAsnAlaCysPheSerIleGlnGlyHisGlnArgAlaIle 11873 : TGGACGAAAGAGGCGTACAAGAACGCGTGTTTCTCCATTCAGGGACATCAACGTGCTATA : 11932 255 : {Ar} >>>> Target Intron 2 >>>> {g}TyrLeuLysLysIleGluAspThr : 263 {!.} 89 bp {!}!:!:!!|||:!!|||||| ! ! {As}++ ++{n}PheValLysGluIleGluArgGly 11933 : {AA}gt.........................ag{C}TTTGTAAAGGAAATTGAACGCGGC : 12048 264 : HisValAsnLeuLeuPheIleSerLeuGlyLeuIleIleMetCysPheSerIleThrLeu : 283 |||! !!..! !||||||! !!!!|||!.!:!!:!:|||:!:|||||||||||||||||| HisAspThrTyrLeuPheThrCysLeuAlaMetValIleValCysPheSerIleThrLeu 12049 : CATGACACGTACCTTTTCACCTGCTTAGCCATGGTGATTGTATGCTTCAGTATTACTCTG : 12108 284 : LeuLys >>>> Target Intron 3 >>>> ValValThrMetAspTyrCysLeuA : 294 :!!:!! 81 bp :!! !||| !|||! !:!!: IleGln++ ++LeuSerThrAlaAspLeuAspIleA 12109 : ATCCAGgt.........................agCTGAGTACGGCGGATTTAGATATAA : 12222 295 : spPheTyrLysTyrSerSerPheLeuIleValGlnLeuMetHisLeuCysTyrValMetI : 314 !!||||||!:! !!!!!||||||:!!:!: !|||||||||||||||! ! !:!!|||: snPheTyrArgAsnCysSerPheMetLeuCysGlnLeuMetHisLeuPheValIleMetL 12223 : ACTTCTACAGAAACTGCAGTTTCATGTTGTGTCAACTGATGCATCTATTTGTCATCATGC : 12282 315 : leGlnGlyGlnPheValIleAspSerCysAsnGluIleTyrTyrSer{Il} >>>> Ta : 330 !!|||||||||||||||:!:|||||||||:!!..!|||:!! :!!{||} euGlnGlyGlnPheValLeuAspSerCysAspArgIleHisAlaAla{Il}++ 12283 : TTCAGGGACAGTTCGTGCTGGATTCGTGCGACAGAATTCACGCGGCG{AT}gt....... : 12334 331 : rget Intron 4 >>>> {e}TyrGluAlaSerTrpTyrAsnIleAsnProLysIleG : 343 470 bp {|}||||||:!!! !||||||!..! !::! !!|||! !| ++{e}TyrGluSerLeuTrpTyrThrSerSerSerLysThrG 12335 : ..................ag{A}TACGAATCATTATGGTACACAAGTTCTTCGAAAACAC : 12839 344 : lnAlaLeuTyrIleLeuAlaLeuArgArgSerLeuThrProProArgLeuThrAlaGlyG : 363 |||||||||||:!::!!||||||||||||!:!||||||||| !! !!||||||||||||| lnAlaLeuTyrValValAlaLeuArgArgAsnLeuThrProThrCysLeuThrAlaGlyG 12840 : AAGCATTATACGTGGTAGCGTTACGAAGAAACCTAACACCTACCTGTTTAACGGCTGGCG : 12899 364 : lyLeuIleGluLeuAsnMetGlnSerPheSerGlu >>>> Target Intron 5 >> : 375 |||||:!::!!||||||||| !||||||! !||| 83 bp lyLeuValGlnLeuAsnMetAlaSerPheLeuGlu++ 12900 : GTTTAGTGCAACTGAACATGGCAAGTTTCTTGGAGgt....................... : 12937 376 : >> ValIleLysLeuSerIleSerTyrTyrThrValLeuArgSerThr : 389 |||:!!|||:!!|||:!!||||||||||||||||||!:!!!!||| ++ValValLysMetSerValSerTyrTyrThrValLeuLysThrThr 12938 : ..agGTGGTAAAAATGTCCGTATCCTATTATACGGTGTTGAAGACAACG : 13062 vulgar: AmOr113 128 389 . LHQN01025741.1 11471 13062 + 643 M 42 126 G 1 0 M 45 135 S 0 2 5 0 2 I 0 75 3 0 2 S 1 1 M 12 36 G 0 9 M 25 75 S 0 2 5 0 2 I 0 85 3 0 2 S 1 1 M 30 90 5 0 2 I 0 77 3 0 2 M 44 132 S 0 2 5 0 2 I 0 466 3 0 2 S 1 1 M 44 132 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11472 13062 643 + . gene_id 1 ; sequence AmOr113 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 11472 11734 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11472 11734 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local splice5 11735 11736 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 11735 11813 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 11812 11813 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 11814 11936 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11814 11936 . + . insertions 9 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 11937 11938 . + . intron_id 2 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 11937 12025 . + . intron_id 2 LHQN01025741.1 exonerate:protein2genome:local splice3 12024 12025 . + . intron_id 1 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 12026 12116 . + . LHQN01025741.1 exonerate:protein2genome:local exon 12026 12116 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 12117 12118 . + . intron_id 3 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 12117 12197 . + . intron_id 3 LHQN01025741.1 exonerate:protein2genome:local splice3 12196 12197 . + . intron_id 2 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 12198 12331 . + . LHQN01025741.1 exonerate:protein2genome:local exon 12198 12331 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 12332 12333 . + . intron_id 4 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 12332 12801 . + . intron_id 4 LHQN01025741.1 exonerate:protein2genome:local splice3 12800 12801 . + . intron_id 3 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 12802 12934 . + . LHQN01025741.1 exonerate:protein2genome:local exon 12802 12934 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 12935 12936 . + . intron_id 5 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 12935 13017 . + . intron_id 5 LHQN01025741.1 exonerate:protein2genome:local splice3 13016 13017 . + . intron_id 4 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 13018 13062 . + . LHQN01025741.1 exonerate:protein2genome:local exon 13018 13062 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11472 13062 643 + . alignment_id 1 ; Query AmOr113 ; Align 11472 129 126 ; Align 11598 172 135 ; Align 11815 218 36 ; Align 11860 230 75 ; Align 12027 256 90 ; Align 12198 286 132 ; Align 12803 331 132 ; Align 13018 375 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 329 Query range: 253 -> 388 Target range: 5550 -> 6438 254 : IleArgTyrLeuLysLysIleGluAspThrHisValAsnLeuLeuPheIleSerLeuGlyLe : 274 .!!||||||:!!|||:!!||| !! !.!!|||! !!.!! !:!!|||||||||:!!||||| PheArgTyrValLysGluIleThrAlaAlaHisAspThrCysMetPheIleSerValGlyLe 5551 : TTCAGATACGTGAAAGAGATCACGGCCGCTCACGATACTTGCATGTTCATCTCGGTGGGACT : 5611 275 : uIleIleMetCysPheSerIleThrLeuLeuLys >>>> Target Intron 1 >>>> : 286 |:!:!!:||| !!.!!|||! !:!!||||||:!! 92 bp uLeuMetMetSerIleSerThrSerLeuLeuGln++ + 5612 : GCTGATGATGAGCATCAGCACTTCGTTGTTGCAGgt.........................a : 5737 287 : ValValThrMetAspTyrCysLeuAspPheTyrLysTyrSerSerPheLeuIleValGlnL : 306 :!! ! ! !!::!! ! !!!:!:: !|||!!!!!!|||!!!! !.!|||| +IleSerGluHisGluHisAspAlaGluTrpThrLeuTyrCysThrPhePheThrAlaGlnL 5738 : gATATCAGAACACGAACACGACGCAGAATGGACATTGTACTGCACGTTCTTCACGGCCCAGT : 5799 307 : euMetHisLeuCysTyrValMetIleGlnGlyGlnPheValIleAspSerCysAsnGluIle : 326 ||:!:|||:!! !:!:!!:!::!!|||||||||||||||:!:|||:!!! !:!!!!::!! euLeuHisMetLeuPheLeuValValGlnGlyGlnPheValLeuAspAlaTyrAspAspVal 5800 : TGTTACACATGCTGTTCTTAGTCGTTCAGGGGCAGTTCGTGTTGGACGCGTACGACGATGTT : 5859 327 : TyrTyrSer{Il} >>>> Target Intron 2 >>>> {e}TyrGluAlaSerTrpTy : 336 ||| !!!!!{||} 314 bp {|}||||||:!!!!!||||| TyrAsnThr{Il}++ ++{e}TyrGluSerThrTrpTy 5860 : TATAATACG{AT}gt.........................ag{A}TACGAATCGACATGGTA : 6203 337 : rAsnIleAsnProLysIleGlnAlaLeuTyrIleLeuAlaLeuArgArgSerLeuThrProP : 357 |||| !::: !|||! |||||||||||||||||||||||||||!!!||||||!.!|||| rAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeuArgSerSerLeuAsnProP 6204 : CAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTACGGAGTAGCCTAAACCCTC : 6266 358 : roArgLeuThrAlaGlyGlyLeuIleGluLeuAsnMetGlnSerPheSerGlu >>>> Ta : 375 || !|||||||||||||||!!!||| !||||||:!::!!!!!||||||||| roLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLysThrPheSerGlu++ 6267 : CCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAGACCTTCTCAGAGgt....... : 6322 376 : rget Intron 3 >>>> ValIleLysLeuSerIleSerTyrTyrThrValLeuArgSer : 388 77 bp :!!||||||! !|||:!:|||||||||||||||:!!!:!||| ++IleIleLysSerSerValSerTyrTyrThrValMetGlnSer 6323 : ..................agATTATAAAATCATCCGTGTCTTACTATACGGTGATGCAATCG : 6436 vulgar: AmOr113 253 388 . LHQN01025741.1 5550 6438 + 329 M 32 96 5 0 2 I 0 88 3 0 2 M 44 132 S 0 2 5 0 2 I 0 310 3 0 2 S 1 1 M 44 132 5 0 2 I 0 73 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5551 6438 329 + . gene_id 2 ; sequence AmOr113 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 5551 5646 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5551 5646 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 5647 5648 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 5647 5738 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 5737 5738 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 5739 5872 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5739 5872 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 5873 5874 . + . intron_id 2 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 5873 6186 . + . intron_id 2 LHQN01025741.1 exonerate:protein2genome:local splice3 6185 6186 . + . intron_id 1 ; splice_site "aG" LHQN01025741.1 exonerate:protein2genome:local cds 6187 6319 . + . LHQN01025741.1 exonerate:protein2genome:local exon 6187 6319 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 6320 6321 . + . intron_id 3 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 6320 6396 . + . intron_id 3 LHQN01025741.1 exonerate:protein2genome:local splice3 6395 6396 . + . intron_id 2 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 6397 6438 . + . LHQN01025741.1 exonerate:protein2genome:local exon 6397 6438 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5551 6438 329 + . alignment_id 2 ; Query AmOr113 ; Align 5551 254 96 ; Align 5739 286 132 ; Align 6188 331 132 ; Align 6397 375 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 285 Query range: 288 -> 375 Target range: 2298 -> 2692 289 : MetAspTyrCysLeuAspPheTyrLysTyrSerSerPheLeuIleValGlnLeuMetHisLe : 309 |||||| !|||:!!!!:||||||||||||!!!.!!||||||:!:|||||||||:!:||||| MetAspProCysMetGluPheTyrLysTyrCysGlyPheLeuValValGlnLeuValHisLe 2299 : ATGGACCCTTGCATGGAGTTCTACAAGTATTGCGGTTTCTTGGTGGTGCAACTGGTTCATTT : 2359 310 : uCysTyrValMetIleGlnGlyGlnPheValIleAspSerCysAsnGluIleTyrTyrSer{ : 330 | !!:!:!! |||||||||!!.|||:!!||| !||| !:!! !! !||| !!!:!{ uLeuPheLeuSerIleGlnGlyHisPheIleIleLeuSerHisAspMetThrTyrAspAsn{ 2360 : GCTTTTCCTTTCTATCCAGGGACACTTTATTATACTCTCGCATGACATGACTTACGACAAC{ : 2422 331 : Il} >>>> Target Intron 1 >>>> {e}TyrGluAlaSerTrpTyrAsnIleAsn : 339 ||} 133 bp {|}|||...|||!.!|||||||||! !::: Il}++ ++{e}TyrSerAlaLysTrpTyrAsnSerSer 2423 : AT}gt.........................ag{A}TATAGCGCAAAATGGTACAACAGTTCG : 2582 340 : ProLysIleGlnAlaLeuTyrIleLeuAlaLeuArgArgSerLeuThrProProArgLeuTh : 360 |||!:!! |||.!!||||||:!:|||||||||||||||||||||||||||||| !||||| ProArgThrGlnThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuTh 2583 : CCGAGAACGCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCAC : 2645 361 : rAlaGlyGlyLeuIleGluLeuAsnMetGlnSerPheSerGluVal : 375 ||||||||||||||||...||||||:!!:!!!!!|||:!!|||||| rAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGluVal 2646 : TGCGGGAGGACTGATTTCCTTGAATTTGGAGACTTTTGCCGAGGTA : 2692 vulgar: AmOr113 288 375 . LHQN01025741.1 2298 2692 + 285 M 41 123 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 2299 2692 285 + . gene_id 3 ; sequence AmOr113 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 2299 2423 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2299 2423 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 2424 2425 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 2424 2556 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 2555 2556 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 2557 2692 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2557 2692 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 2299 2692 285 + . alignment_id 3 ; Query AmOr113 ; Align 2299 289 123 ; Align 2558 331 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 189 Query range: 120 -> 217 Target range: 4954 -> 5242 121 : SerPheLeuAlaMetPheTyrPheIleAsnAlaTyrCysCysSerLeuLeuPheLeuGlnVa : 141 ||||||! ! !! !||| ! :!::!! !! ! |||:!! !||||||:!! :! SerPheTyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLe 4955 : TCATTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTT : 5015 142 : lProTrpThrAlaArgLeuLeuTyrMetIleLysSerGlnAsnThrSerProProMetLeuT : 162 !|||!::..!:!!! !:!!||| !!!!::!!! ! !! !||| !!!!! ! !! !|||! uProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuP 5016 : GCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGT : 5078 163 : yrValIleProGlyTyrTyrPheValAspAspAspArgAspTyrTyrTyrPheIleGlnLeu : 182 :!||| !|||!.!|||||||||||||||!!:|||!:! |||:!!|||!!.||| ! ! heValTyrProAlaTyrTyrPheValAspGluAspLys---TyrHisTyrLeuIleValGly 5079 : TCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAA---TATCATTACTTGATCGTAGGG : 5135 183 : HisMetSerLeuSerIleIleMetValAlaAsnValTyrValAlaTyrAspThrCysTyrMe : 203 ||||||! !||| !:!::!!|||:!! !::!|||!:! !|||! !|||.!! !|||:! HisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrVa 5136 : CATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGT : 5198 204 : tValPheValGlnHisValCysGlyLeuLeuAlaValAlaGly : 217 ! ! !|||||||||!.!|||||||||||||||:!!|||||| lTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5199 : GTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5242 vulgar: AmOr113 120 217 . LHQN01025741.1 4954 5242 + 189 M 54 162 G 1 0 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4955 5242 189 + . gene_id 4 ; sequence AmOr113 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4955 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4955 5242 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 4955 5242 189 + . alignment_id 4 ; Query AmOr113 ; Align 4955 121 162 ; Align 5117 176 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 123 -> 217 Target range: 1552 -> 1831 124 : AlaMetPheTyrPheIleAsnAlaTyrCysCysSerLeuLeuPheLeuGlnValProTrpTh : 144 :!!:!!!:!!:! :!!|||!.! ! !|||! !:!!:!!||| !..!||| !! || SerLeuTyrPheThrValAsnGlyLeuPheCysTyrValIlePheThrSerValAlaIleTh 1553 : TCTCTGTATTTCACAGTAAACGGACTGTTTTGCTACGTTATATTCACCTCAGTGGCGATTAC : 1613 145 : rAlaArgLeuLeuTyrMetIleLysSerGlnAsnThrSerProProMetLeuTyrValIleP : 165 | !!|||:!!||| !!:!:|||..! !!:!!||| !|||! ! !:!: !!:!:!! !| rProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValAspPheIleTyrP 1614 : GCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTCATTTATC : 1676 166 : roGlyTyrTyrPheValAspAspAspArgAspTyrTyrTyrPheIleGlnLeuHisMetSer : 185 ||!.!|||||| !:!!|||!!:!!: !!::!!||||||.!!:!:..! !|||||| ! roAlaTyrTyrGlyLeuAspGluGlu---GluHisTyrTyrIleLeuMetGlyHisMetLeu 1677 : CTGCATACTACGGTCTCGACGAGGAG---GAACATTATTACATTCTGATGGGTCACATGCTC : 1733 186 : LeuSerIleIleMetValAlaAsnValTyrValAlaTyrAspThrCysTyrMetValPheVa : 206 ! ! !|||! !:!:||| ! !||||||:!!:!!! !|||||| !|||||| !.!!|| CysValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMetAsnIleVa 1734 : TGCGTGATAACTGTAGTGTTTTTCGTCTACATCTCCTGTGACACGATCTACATGAATATCGT : 1796 207 : lGlnHisValCysGlyLeuLeuAlaValAlaGly : 217 |||||||!.!|||||||||||| !|||:!!||| lGlnHisAlaCysGlyLeuLeuAsnValSerGly 1797 : GCAACACGCGTGCGGATTACTGAACGTCTCTGGG : 1831 vulgar: AmOr113 123 217 . LHQN01025741.1 1552 1831 + 171 M 50 150 G 1 0 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1553 1831 171 + . gene_id 5 ; sequence AmOr113 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1553 1831 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1553 1831 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 1553 1831 171 + . alignment_id 5 ; Query AmOr113 ; Align 1553 124 150 ; Align 1703 175 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 330 -> 376 Target range: 9281 -> 9419 331 : TyrGluAlaSerTrpTyrAsnIleAsnProLysIleGlnAlaLeuTyrIleLeuAlaLeuAr : 351 ||||||:!!..!|||||||||.!!!.!|||!:!! !||||||||||||:!!||||||||||| TyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeuAr 9282 : TACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTGAG : 9342 352 : gArgSerLeuThrProProArgLeuThrAlaGlyGlyLeuIleGluLeuAsnMetGlnSerP : 372 |!!!!!!|||!.!||||||! !|||||||||||||||:!!! !||||||:!:!:!|||| gSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSerP 9343 : AAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATCGT : 9405 373 : heSerGluValIle : 376 ||:!!||||||||| heAlaGluValIle 9406 : TCGCAGAGGTGATT : 9419 vulgar: AmOr113 330 376 . LHQN01025741.1 9281 9419 + 161 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 9282 9419 161 + . gene_id 6 ; sequence AmOr113 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 9282 9419 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9282 9419 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 9282 9419 161 + . alignment_id 6 ; Query AmOr113 ; Align 9282 331 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 0 -> 54 Target range: 4356 -> 4518 1 : MetAspSerAspIleLeuGluLysArgPheLeuLysIleThrLysArgPheAlaLysLeuSe : 21 ||||||:!! !! ||||||||||||!:!|||!:!|||!.!|||!:!.!!!.!! !|||!! MetAspAlaIleThrLeuGluLysArgTyrLeuArgIleAsnLysLysLeuGlyMetLeuTh 4357 : ATGGATGCGATCACGTTAGAGAAACGTTACTTGAGAATCAACAAGAAGCTCGGCATGCTAAC : 4417 22 : rGlyIleTrpProAspGlnAsnLysTyrLeuLysTyrIleSerTrpIleIleIleTyrValI : 42 !|||:!:|||||| !!|||!!.!..! ! !|||!::|||||| ! ! :!!:!: ! !!: rGlyValTrpProTyrGlnLysSerSerProLysTrpIleSerArgThrValValLeuPheV 4418 : CGGTGTGTGGCCCTATCAAAAGAGCTCGCCAAAATGGATCAGTCGAACGGTAGTGCTCTTTG : 4480 43 : leSerIleProSerIleValValGlnIleAlaArgIle : 54 !:! !||||||!!! !|||..!|||:!!! !!:!||| alIleIleProCysTyrValThrGlnValGluLysIle 4481 : TGATAATACCTTGTTATGTTACACAGGTAGAAAAAATA : 4518 vulgar: AmOr113 0 54 . LHQN01025741.1 4356 4518 + 117 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4357 4518 117 + . gene_id 7 ; sequence AmOr113 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4357 4518 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4357 4518 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4357 4518 117 + . alignment_id 7 ; Query AmOr113 ; Align 4357 1 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 257 Query range: 121 -> 216 Target range: 4957 -> 5242 122 : PhePheCysSerPheTyrGluValSerIleTyrSerCysGlyPheMetPheLeuSerMetPr : 142 |||!:!! !!!!||| ! !||| !|||! ! !|||!.! !:!:|||:!!!!!:!!|| PheTyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuPr 4958 : TTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCC : 5018 143 : oSerIleProLeuIleMetAsnValIleMetProLeuAsnGluSerArgSerArgGluLeuV : 163 |! !:!: !!! !|||:!!:!!:!!:!!|||||||||||||||!!!|||:!!||| !!!!| oPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheV 5019 : GTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCG : 5081 164 : alTyrProSerTyrTyrPheValAspGluGlnLysTyrTyrTyrLeuIleThrGlyHisMet : 183 ||||||||:!!||||||||||||||||||.!.||||||:!!|||||||||..!||||||||| alTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMet 5082 : TCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATG : 5141 184 : LeuAlaValCysLeuGlyHisValPheValTyrIleAlaCysAspIleAsnLeuIleHisVa : 204 ! ! !||| :!! !! !:!!! !|||!:! !||||||||| !|||! !:!::!!!. TyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAl 5142 : TATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGC : 5204 205 : lValHisHisGlyCysAlaLeuLeuThrIleSerGly : 216 !|||!!.|||!.!|||!.!||||||.!!|||:!!||| aValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5205 : CGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5242 vulgar: AmOr107 121 216 . LHQN01025741.1 4957 5242 + 257 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4958 5242 257 + . gene_id 1 ; sequence AmOr107 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4958 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4958 5242 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4958 5242 257 + . alignment_id 1 ; Query AmOr107 ; Align 4958 122 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 214 Query range: 125 -> 216 Target range: 1558 -> 1831 126 : PheTyrGluValSerIleTyrSerCysGlyPheMetPheLeuSerMetProSerIleProLe : 146 !:!!:! !|||!:! ! ! !||| ! !!!!:||| !|||:!! !!! !! |||! TyrPheThrValAsnGlyLeuPheCysTyrValIlePheThrSerValAlaIleThrProAr 1559 : TATTTCACAGTAAACGGACTGTTTTGCTACGTTATATTCACCTCAGTGGCGATTACGCCTCG : 1619 147 : uIleMetAsnValIleMetProLeuAsnGluSerArgSerArgGluLeuValTyrProSerT : 167 !:!!:!::!!:!!||| ||| !||||||||||||.!! !!!:!!!:!!||||||:!!| gValLeuAspLeuIleSerProLysAsnGluSerArgGlyValAspPheIleTyrProAlaT 1620 : TGTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTCATTTATCCTGCAT : 1682 168 : yrTyrPheValAspGluGlnLysTyrTyrTyrLeuIleThrGlyHisMetLeuAlaValCys : 187 ||||| !:!!||||||:!!:!!:!!||||||:!!:!:! !||||||||||||..!||| yrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHisMetLeuCysValIle 1683 : ACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCACATGCTCTGCGTGATA : 1742 188 : LeuGlyHisValPheValTyrIleAlaCysAspIleAsnLeuIleHisValValHisHisGl : 208 !! ! !!||||||||||||:!!||||||! ! !! !!!::!!:!!|||!!.|||!. ThrValValPhePheValTyrIleSerCysAspThrIleTyrMetAsnIleValGlnHisAl 1743 : ACTGTAGTGTTTTTCGTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGC : 1805 209 : yCysAlaLeuLeuThrIleSerGly : 216 !|||!.!||||||!.!:!!|||||| aCysGlyLeuLeuAsnValSerGly 1806 : GTGCGGATTACTGAACGTCTCTGGG : 1831 vulgar: AmOr107 125 216 . LHQN01025741.1 1558 1831 + 214 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1559 1831 214 + . gene_id 2 ; sequence AmOr107 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1559 1831 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1559 1831 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1559 1831 214 + . alignment_id 2 ; Query AmOr107 ; Align 1559 126 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 126 -> 216 Target range: 11465 -> 11735 127 : TyrGluValSerIleTyrSerCysGlyPheMetPheLeuSerMetProSerIleProLeu : 146 !:! !|||!:! |||! !|||..!|||:!!|||:!!..!:!!|||!!!! !!! ! PheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArg 11466 : TTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGA : 11523 147 : IleMetAsnValIleMetProLeuAsnGluSerArgSerArgGluLeuValTyrProSer : 166 :!::!!||| ! !! ! !!! !||| !!!!! !||| !:!!!!!||| |||.!! LeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuGlnPheValIleProGly 11524 : TTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGA : 11583 167 : TyrTyrPheValAspGluGlnLysTyrTyrTyrLeuIleThrGlyHisMetLeuAlaVal : 186 |||||||||||||||||| !:!!|||||||||! !|||! ! !||| !..!..! TyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThr 11584 : TATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACA : 11643 187 : CysLeuGlyHisValPheValTyrIleAlaCysAspIleAsnLeuIleHisValValHis : 206 !||| ! ||| ! |||||| !|||||||||! !!:!! !!!: :!!|||!!. ValLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGln 11644 : GTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAA : 11703 207 : HisGlyCysAlaLeuLeuThrIleSerGly : 216 ||| !|||!.!|||!!!.!!:!::!!||| HisThrCysGlyLeuPheAlaValAlaGly 11704 : CACACTTGCGGACTGTTCGCCGTGGCCGGG : 11735 vulgar: AmOr107 126 216 . LHQN01025741.1 11465 11735 + 171 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11466 11735 171 + . gene_id 3 ; sequence AmOr107 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11466 11735 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11466 11735 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11466 11735 171 + . alignment_id 3 ; Query AmOr107 ; Align 11466 127 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 325 -> 380 Target range: 2536 -> 2701 326 : GluGluValPheLysThrIleTyrAspAlaArgTrpTyrTyrGlySerSerLysThrGlnSe : 346 :!!|||:!!||| !! !|||..!|||!:!|||||| !!.!!||| !!!:!||||||!! GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGlnTh 2537 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAAAC : 2597 347 : rLeuTyrLeuLeuValLeuArgLysCysLeuAsnProProLysLeuThrGlyGlyGlyLeuI : 367 !||||||:!!|||!.!||||||!:! !!|||!.!|||||| !||||||!.!|||||||||| rLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGlyLeuI 2598 : TCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGA : 2660 368 : leAlaLeuAsnLeuAspSerPheValLysValLeuLysThr : 380 ||:!!|||||||||!!:!!!|||!.!:!!||| !! !||| leSerLeuAsnLeuGluThrPheAlaGluValAsnMetThr 2661 : TTTCCTTGAATTTGGAGACTTTTGCCGAGGTAAATATGACA : 2701 vulgar: AmOr107 325 380 . LHQN01025741.1 2536 2701 + 154 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 2537 2701 154 + . gene_id 4 ; sequence AmOr107 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 2537 2701 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2537 2701 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 2537 2701 154 + . alignment_id 4 ; Query AmOr107 ; Align 2537 326 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 332 -> 377 Target range: 6187 -> 6322 333 : TyrAspAlaArgTrpTyrTyrGlySerSerLysThrGlnSerLeuTyrLeuLeuValLeuAr : 353 |||!!::!!! !|||||| !!..!|||!!!|||||||||:!!||||||:!!|||!.!||||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeuAr 6188 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTACG : 6248 354 : gLysCysLeuAsnProProLysLeuThrGlyGlyGlyLeuIleAlaLeuAsnLeuAspSerP : 374 |!.. !!|||||||||||| !||||||!.!||||||!!!|||.!!||||||||| ! !!!| gSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLysThrP 6249 : GAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAGACCT : 6311 375 : heValLysVal : 377 || !:!!||| heSerGluVal 6312 : TCTCAGAGGTA : 6322 vulgar: AmOr107 332 377 . LHQN01025741.1 6187 6322 + 139 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 6188 6322 139 + . gene_id 5 ; sequence AmOr107 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 6188 6322 . + . LHQN01025741.1 exonerate:protein2genome:local exon 6188 6322 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 6188 6322 139 + . alignment_id 5 ; Query AmOr107 ; Align 6188 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 332 -> 381 Target range: 12802 -> 12949 333 : TyrAspAlaArgTrpTyrTyrGlySerSerLysThrGlnSerLeuTyrLeuLeuValLeu : 352 |||!!::!! !|||||| .!!|||||||||||||||:!!||||||:!!:!!!.!||| TyrGluSerLeuTrpTyrThrSerSerSerLysThrGlnAlaLeuTyrValValAlaLeu 12803 : TACGAATCATTATGGTACACAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCGTTA : 12860 353 : ArgLysCysLeuAsnProProLysLeuThrGlyGlyGlyLeuIleAlaLeuAsnLeuAsp : 372 |||!:! !|||!..||| !! ||||||!.!|||||||||:!: !||||||:!!! ArgArgAsnLeuThrProThrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMetAla 12861 : CGAAGAAACCTAACACCTACCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATGGCA : 12920 373 : SerPheValLysValLeuLysThrSer : 381 ||||||:!!:!!||| !! |||!:! SerPheLeuGluValAsnThrThrAsn 12921 : AGTTTCTTGGAGGTAAACACCACCAAC : 12949 vulgar: AmOr107 332 381 . LHQN01025741.1 12802 12949 + 131 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 12803 12949 131 + . gene_id 6 ; sequence AmOr107 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 12803 12949 . + . LHQN01025741.1 exonerate:protein2genome:local exon 12803 12949 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 12803 12949 131 + . alignment_id 6 ; Query AmOr107 ; Align 12803 333 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 136 -> 183 Target range: 8913 -> 9054 137 : MetPheLeuSerMetProSerIleProLeuIleMetAsnValIleMetProLeuAsnGluSe : 157 !!:||||||!!!:!!|||! ! !|||:!!|||:!!:!!:!! ! !|||||||||:!!!! IlePheLeuCysValProPheAlaProIleIleLeuAspIleCysAlaProLeuAsnLysTh 8914 : ATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTGCGCGCCACTGAACAAAAC : 8974 158 : rArgSerArgGluLeuValTyrProSerTyrTyrPheValAspGluGlnLysTyrTyrTyrL : 178 !|||!.!|||! !!!!|||||||||:!!||||||!:::!!||| :!!:!!|||||| : rArgLysArgAlaPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMetI 8975 : GAGAAAACGTGCGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATGA : 9037 179 : euIleThrGlyHisMet : 183 !!!!:! ! !|||!!: leMetIleIleHisIle 9038 : TAATGATAATACACATA : 9054 vulgar: AmOr107 136 183 . LHQN01025741.1 8913 9054 + 123 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 8914 9054 123 + . gene_id 7 ; sequence AmOr107 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 8914 9054 . + . LHQN01025741.1 exonerate:protein2genome:local exon 8914 9054 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 8914 9054 123 + . alignment_id 7 ; Query AmOr107 ; Align 8914 137 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 0 -> 56 Target range: 4356 -> 4524 1 : MetAspGlnGlnAlaMetGluGluLeuTyrLeuLysAspAsnLysPhePheGlyGlnLeuVa : 21 |||||| ! .!!:!:|||:!!! !||||||!:! !|||||| .!!|||..!|||.. MetAspAlaIleThrLeuGluLysArgTyrLeuArgIleAsnLysLysLeuGlyMetLeuTh 4357 : ATGGATGCGATCACGTTAGAGAAACGTTACTTGAGAATCAACAAGAAGCTCGGCATGCTAAC : 4417 22 : lGlyValTrpProAspGlnGlyLysPheMetLysPheLeuMetArgPheIleIleLeuIleV : 42 !|||||||||||| !!||| !!..! |||!:::!!! ||| :!!:!:|||.!!| rGlyValTrpProTyrGlnLysSerSerProLysTrpIleSerArgThrValValLeuPheV 4418 : CGGTGTGTGGCCCTATCAAAAGAGCTCGCCAAAATGGATCAGTCGAACGGTAGTGCTCTTTG : 4480 43 : alMetIleIleAlaPheIleAlaGlnIleSerArgValAlaVal : 56 ||!!:||| !..!!:!:!!.!!|||:!!..!!:!:!! !:!! alIleIleProCysTyrValThrGlnValGluLysIleArgIle 4481 : TGATAATACCTTGTTATGTTACACAGGTAGAAAAAATAAGGATT : 4524 vulgar: AmOr107 0 56 . LHQN01025741.1 4356 4524 + 112 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4357 4524 112 + . gene_id 8 ; sequence AmOr107 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4357 4524 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4357 4524 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4357 4524 112 + . alignment_id 8 ; Query AmOr107 ; Align 4357 1 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 255 Query range: 128 -> 216 Target range: 4978 -> 5242 129 : ValMetValTyrSerCysAlaPheMetPheLeuValIleProThrIleProProIleLeuAs : 149 ||| :!!! ! !|||||| !:!:|||:!! !:!:||| !:!: !!|||||||||:! ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAs 4979 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGA : 5039 150 : nIleValAlaProLeuAsnValSerArgSerArgGluPheIleTyrProThrTyrTyrPheV : 170 !|||:!! !|||||||||! !!!!|||:!!||| !|||:!!||||||.!!|||||||||| pIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheV 5040 : CATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCG : 5102 171 : alAspGluGlnLysTyrTyrTyrProIleLeuThrHisMetIleAlaValIleLeuValLeu : 190 ||||||||.!.||||||:!!||| !|||:!! !|||||| ! !|||:!::!!:!!||| alAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeu 5103 : TCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTT : 5162 191 : SerSerValTyrLeuAlaCysAspThrAsnLeuValGlnIleValHisHisGlyCysAlaLe : 211 ! !||||||!:!! !|||||||||.!!|||! !||| ! !|||!!.|||!.!|||!.!|| IleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLe 5163 : ATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATT : 5225 212 : uLeuAlaIleSerGly : 216 ||||||||||:!!||| uLeuAlaIleAlaGly 5226 : GTTGGCCATTGCAGGG : 5242 vulgar: AmOr109 128 216 . LHQN01025741.1 4978 5242 + 255 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4979 5242 255 + . gene_id 1 ; sequence AmOr109 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4979 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4979 5242 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4979 5242 255 + . alignment_id 1 ; Query AmOr109 ; Align 4979 129 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 227 Query range: 287 -> 377 Target range: 5738 -> 6322 288 : LeuSerThrMetGluValGlyIleArgPhePheThrPheCysAlaTyrThrIleAlaGlnLe : 308 :!!||| ! ||| !! ! !..!!:: !!:!|||.!!!:! !! |||||||| IleSerGluHisGluHisAspAlaGluTrpThrLeuTyrCysThrPhePheThrAlaGlnLe 5739 : ATATCAGAACACGAACACGACGCAGAATGGACATTGTACTGCACGTTCTTCACGGCCCAGTT : 5799 309 : uIleHisLeuPhePheLeuThrIleMetGlyGlnPheLeuIleAsnAlaAsnGluGluThrP : 329 |:!!|||:!!.!.||||||..!:!!..!|||||||||:!!:!::!!||| !!!!:!!:..!! uLeuHisMetLeuPheLeuValValGlnGlyGlnPheValLeuAspAlaTyrAspAspValT 5800 : GTTACACATGCTGTTCTTAGTCGTTCAGGGGCAGTTCGTGTTGGACGCGTACGACGATGTTT : 5862 330 : heLysThr{Il} >>>> Target Intron 1 >>>> {e}TyrGluAlaAspTrpTyr : 338 :!!!.|||{||} 314 bp {|}||||||:!! |||||| yrAsnThr{Il}++ ++{e}TyrGluSerThrTrpTyr 5863 : ATAATACG{AT}gt.........................ag{A}TACGAATCGACATGGTAC : 6203 339 : AsnGlySerSerLysMetGlnSerLeuTyrValLeuValLeuArgLysCysLeuSerProPr : 359 |||..!|||!!!|||! !|||:!!||||||:!!|||!.!||||||!.. !!|||!:!||||| AsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeuArgSerSerLeuAsnProPr 6204 : AATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTACGGAGTAGCCTAAACCCTCC : 6266 360 : oLysLeuThrGlyGlyGlyPheValAlaLeuAsnLeuAspSerPheValGlnIle : 377 | !||||||!.!|||||||||:!!.!!||||||||| ! !!!||| !:!!:!! oLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLysThrPheSerGluVal 6267 : CTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAGACCTTCTCAGAGGTA : 6322 vulgar: AmOr109 287 377 . LHQN01025741.1 5738 6322 + 227 M 44 132 S 0 2 5 0 2 I 0 310 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5739 6322 227 + . gene_id 2 ; sequence AmOr109 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 5739 5872 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5739 5872 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 5873 5874 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 5873 6186 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 6185 6186 . + . intron_id 0 ; splice_site "aG" LHQN01025741.1 exonerate:protein2genome:local cds 6187 6322 . + . LHQN01025741.1 exonerate:protein2genome:local exon 6187 6322 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5739 6322 227 + . alignment_id 2 ; Query AmOr109 ; Align 5739 288 132 ; Align 6188 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 207 Query range: 126 -> 247 Target range: 11465 -> 11828 127 : TyrLysValMetValTyrSerCysAlaPheMetPheLeuValIleProThrIleProPro : 146 !:! !|||! !.!|||! !|||:!!|||:!!|||:!! !:!:||| !! !!! ! PheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArg 11466 : TTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGA : 11523 147 : IleLeuAsnIleValAlaProLeuAsnValSerArgSerArgGluPheIleTyrProThr : 166 :!::!!||| ! ! !!! !|||:!!!!!! !||| !:!!|||:!! ||| ! LeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuGlnPheValIleProGly 11524 : TTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGA : 11583 167 : TyrTyrPheValAspGluGlnLysTyrTyrTyrProIleLeuThrHisMetIleAlaVal : 186 |||||||||||||||||| !:!!||||||||| !|||:!! !||| ! ..!..! TyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThr 11584 : TATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACA : 11643 187 : IleLeuValLeuSerSerValTyrLeuAlaCysAspThrAsnLeuValGlnIleValHis : 206 :!!|||:!!:!! ! !||||||! !||||||||||||!:!! !:!! !:!:|||!!. ValLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGln 11644 : GTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAA : 11703 207 : HisGlyCysAlaLeuLeuAlaIleSerGlyTyrHisPheLysHisAlaValAspAspVal : 226 ||| !|||!.!|||!!!|||:!::!!|||! .!. ! !... ... ::: HisThrCysGlyLeuPheAlaValAlaGly***GluAsnLeuArgAspThrPhePheLeu 11704 : CACACTTGCGGACTGTTCGCCGTGGCCGGGTGAGAAAACTTGAGagatacattttttctc : 11763 227 : LysPheCysAspGlyTyrTyrIleAspAlaSerMetAspGluThrTyrValLysIleArg : 246 ...||| ...||| !!||| ! ! !!!!:!!!!:...:!! ! :!! !:!!!:! SerPheSerSerGlyAsnTyrTyrArgAspCysValGluArgSerGlnIleProLeuGln 11764 : tcattttcgtCGGGAAATTATTATCGAGATTGCGTGGAACGTTCACAGATACCGCTTCAA : 11823 247 : Gln : 247 :!! Lys 11824 : AAA : 11828 vulgar: AmOr109 126 247 . LHQN01025741.1 11465 11828 + 207 M 121 363 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11466 11828 207 + . gene_id 3 ; sequence AmOr109 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11466 11828 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11466 11828 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11466 11828 207 + . alignment_id 3 ; Query AmOr109 ; Align 11466 127 363 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 301 -> 378 Target range: 9075 -> 9419 302 : AlaTyrThrIleAlaGlnLeuIleHisLeuPhePheLeuThrIleMetGlyGlnPheLeuIl : 322 .!!!:! !:!!!.!||| !.!!|||:!!|||||||||!.!:!!..!|||||||||:!!|| ThrPhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGlnGlyGlnPheValIl 9076 : ACGTTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGGACAATTTGTGAT : 9136 323 : eAsnAlaAsnGluGlu{Th} >>>> Target Intron 1 >>>> {r}PheLysThrI : 332 ||||||| !!!:|||{ } 113 bp {!} !! !! eAsnAlaPheAspGlu{Le}++ --{u}ValLeuCysA 9137 : AAACGCGTTCGACGAA{CT}gt.........................ct{T}GTCCTTTGCA : 9279 333 : leTyrGluAlaAspTrpTyrAsnGlySerSerLysMetGlnSerLeuTyrValLeuValLeu : 352 !||||||:!!.!.||||||||| !!!! !!!:!! |||:!!||||||||||||!.!||| rgTyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeu 9280 : GATACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTG : 9339 353 : ArgLysCysLeuSerProProLysLeuThrGlyGlyGlyPheValAlaLeuAsnLeuAspSe : 373 |||!..||||||!:!|||||| !||||||!.!||||||.!...!.!!||||||||| || ArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSe 9340 : AGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATC : 9402 374 : rPheValGlnIleLeu : 378 ||||!.!:!!:!::!! rPheAlaGluValIle 9403 : GTTCGCAGAGGTGATT : 9419 vulgar: AmOr109 301 378 . LHQN01025741.1 9075 9419 + 174 M 26 78 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 9076 9419 174 + . gene_id 4 ; sequence AmOr109 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 9076 9155 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9076 9155 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 9156 9157 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 9156 9268 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 9267 9268 . + . intron_id 0 ; splice_site "CT" LHQN01025741.1 exonerate:protein2genome:local cds 9269 9419 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9269 9419 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 9076 9419 174 + . alignment_id 4 ; Query AmOr109 ; Align 9076 302 78 ; Align 9270 329 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 325 -> 377 Target range: 2536 -> 2692 326 : GluGluThrPheLysThrIleTyrGluAlaAspTrpTyrAsnGlySerSerLysMetGlnSe : 346 :!!||| !||| !! !|||...||| ! |||||||||.!!||| !!!:!! !|||!! GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGlnTh 2537 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAAAC : 2597 347 : rLeuTyrValLeuValLeuArgLysCysLeuSerProProLysLeuThrGlyGlyGlyPheV : 367 !||||||||||||!.!||||||!:! !!|||!!!|||||| !||||||!.!||||||.!.: rLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGlyLeuI 2598 : TCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGA : 2660 368 : alAlaLeuAsnLeuAspSerPheValGlnIle : 377 !!:!!|||||||||!!:!!!|||!.!:!!:!! leSerLeuAsnLeuGluThrPheAlaGluVal 2661 : TTTCCTTGAATTTGGAGACTTTTGCCGAGGTA : 2692 vulgar: AmOr109 325 377 . LHQN01025741.1 2536 2692 + 149 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 2537 2692 149 + . gene_id 5 ; sequence AmOr109 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 2537 2692 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2537 2692 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 2537 2692 149 + . alignment_id 5 ; Query AmOr109 ; Align 2537 326 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 0 -> 54 Target range: 4356 -> 4518 1 : MetAspGluArgAlaIleGluAspGlnTyrLeuLysIleAsnLysPhePheGlyGlnLeuVa : 21 ||||||! !! !.!!:!!||| ! !::||||||!:!||||||||| .!!|||..!|||.. MetAspAlaIleThrLeuGluLysArgTyrLeuArgIleAsnLysLysLeuGlyMetLeuTh 4357 : ATGGATGCGATCACGTTAGAGAAACGTTACTTGAGAATCAACAAGAAGCTCGGCATGCTAAC : 4417 22 : lGlyValTrpProTyrGlnLysLysPhePheLysThrCysIleArgPheIleThrPheThrI : 42 !|||||||||||||||||||||!..! ||| ! !! !||| :!!..!.!! !: rGlyValTrpProTyrGlnLysSerSerProLysTrpIleSerArgThrValValLeuPheV 4418 : CGGTGTGTGGCCCTATCAAAAGAGCTCGCCAAAATGGATCAGTCGAACGGTAGTGCTCTTTG : 4480 43 : leMetIlePheSerLeuAlaThrGlnIleSerArgVal : 54 !:!!:||| !!!!! !!.!||||||:!!..!!:!:!! alIleIleProCysTyrValThrGlnValGluLysIle 4481 : TGATAATACCTTGTTATGTTACACAGGTAGAAAAAATA : 4518 vulgar: AmOr109 0 54 . LHQN01025741.1 4356 4518 + 112 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4357 4518 112 + . gene_id 6 ; sequence AmOr109 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4357 4518 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4357 4518 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4357 4518 112 + . alignment_id 6 ; Query AmOr109 ; Align 4357 1 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr98 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 146 -> 230 Target range: 11492 -> 11741 147 : IleLeuPheLeuLeuValProMetTyrPheProIleLeuAspMetIleAspAlaLeuAsn : 166 .!!||||||:!!! !|||||| ! !! !:!::!!:!! ! ! ! .!!! !||| PheLeuPheIleGlnValProTrpThrThrArgLeuValAsnSerTyrLysThrGlnAsn 11493 : TTCTTGTTCATACAAGTGCCATGGACGACCCGATTGGTGAACTCGTACAAGACACAGAAT : 11550 167 : GlnThrArgSerArgGlnGlnLeuLeuArgValAsnTyrMetValPheAsnAlaAspAsp : 186 !|||! !||| !||| :!!:!!! !! ! !!|||.!.||| :!!! !! !!: IleThrProSerLeuGlnPheValIleProGlyTyrTyrPheVal---AspGluValGlu 11551 : ATAACGCCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTC---GACGAAGTAGAA : 11607 187 : TyrPhePheTyrValTyrLeuGlnLeuAlaTrpGlyAlaIleValIleValMetIleVal : 206 |||!:!!:!|||:!! |||!!. !.!!!! !!.!:!::!!:!!|||:!!:!: ! TyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeuIleValValValValTyr 11608 : TACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTAC : 11667 207 : IleThrValAspSerLeuTyrIleIleIleIleHisHisValCysGlyLeuPheAlaVal : 226 !.!! !|||!!! !|||!!::!!:!::!:!!.|||..!|||||||||||||||||| CysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaVal 11668 : TGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTG : 11727 227 : CysSerTyrGlu : 230 ..!.!!! ||| AlaGly***Glu 11728 : GCCGGGTGAGAA : 11741 vulgar: AmOr98 146 230 . LHQN01025741.1 11492 11741 + 105 M 35 105 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11493 11741 105 + . gene_id 1 ; sequence AmOr98 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11493 11741 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11493 11741 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 11493 11741 105 + . alignment_id 1 ; Query AmOr98 ; Align 11493 147 105 ; Align 11598 183 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr104 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 147 -> 233 Target range: 4999 -> 5254 148 : ValLeuPheLeuLeuValProLeuIlePheProPheLeuAspIleValHisProLeuAsnGl : 168 !.!||||||:!!! !:!!|||!!!:!:! |||.!!|||||||||:!! ||||||||||| AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGl 5000 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGA : 5060 169 : uThrArgProArgGlnGlnLeuPheArgValAsnTyrLeuIlePheAsnHisAsnAspTyrP : 189 ||||||| !!||| ! :!!!:!! !!.! !!|||!!!:!! :!!.!.:!! ! ||| uThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal---AspGluAspLysTyrH 5061 : GACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC---GACGAGGACAAATATC : 5120 190 : hePheTyrIleTyrLeuGlnLeuAlaTrpGlySerIleIleValValMetIleIleValThr : 209 !!:!! ||| !!!.:!! ! ! ! !:!!!!::!!:!! :!!.!! !.!! isTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 5121 : ATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 5180 210 : ValAspSerLeuTyrMetIleIleIleHisHisSerSerGlyMetPheAlaMetCysGlyTy : 230 !|||:!! !|||:!! ! !:!:!!.|||:!!!!!|||:!!!!.|||!!:...|||!! CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly** 5181 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTA : 5243 231 : rLysValGln : 233 !|||||| *LeuValGln 5244 : ATTAGTTCAA : 5254 vulgar: AmOr104 147 233 . LHQN01025741.1 4999 5254 + 115 M 35 105 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5000 5254 115 + . gene_id 1 ; sequence AmOr104 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5000 5254 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5000 5254 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 5000 5254 115 + . alignment_id 1 ; Query AmOr104 ; Align 5000 148 105 ; Align 5105 184 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr102 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 142 -> 233 Target range: 4984 -> 5254 143 : LeuLeuIleAlaLeuValLeuPheLeuLeuIleProLeuIleSerProMetLeuAspValPh : 163 :!!! !:!!..! !!.!||||||:!!! !:!:|||!!!:!:||||||!!:||||||:!!.! IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLe 4985 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCT : 5045 164 : eLeuProLeuAsnGluThrArgProArgGlnGlnLeuLeuLysValAsnTyrLeuValPheA : 184 !:!!|||||||||||||||||| !!||| ! :!!! ! !!.! !!|||!!!||| : uMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal---A 5046 : TATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC---G : 5105 185 : snAspAspAspTyrPhePheTyrValTyrLeuGlnLeuAlaTrpGlySerIleIleValVal : 204 !!!!:||| ! ||| !!:!! :!! !!!.:!! ! ! ! !:!!!!::!!:!! spGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIle 5106 : ACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATC : 5165 205 : ValThrSerValAlaValAspSerLeuLeuIleLeuIleIleHisHisCysSerGlyLeuPh : 225 !..!! ! !||| !|||:!! !! !:!:! ! !:!:!!.|||..!!!!||||||!! SerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLe 5166 : TCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTT : 5228 226 : eThrValCysGlyTyrGlnValGln : 233 ..!!:!!...|||!! !|||||| uAlaIleAlaGly***LeuValGln 5229 : GGCCATTGCAGGGTAATTAGTTCAA : 5254 vulgar: AmOr102 142 233 . LHQN01025741.1 4984 5254 + 121 M 40 120 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4985 5254 121 + . gene_id 1 ; sequence AmOr102 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4985 5254 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4985 5254 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 4985 5254 121 + . alignment_id 1 ; Query AmOr102 ; Align 4985 143 120 ; Align 5105 184 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr99 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 151 -> 248 Target range: 5002 -> 5290 152 : LeuPheLeuValValProLeuValSerProIleLeuAspIleValHisProLeuAsnGlnTh : 172 ||||||:!! !:!!|||!!!|||||||||||||||||||||:!! |||||||||:!!|| LeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluTh 5003 : CTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGAC : 5063 173 : rArgSerArgGlnGlnLeuLeuArgValAsnTyrIleValPheAspIleAspAspTyrPheP : 193 ||||:!!||| ! :!!! !! !!.! !!|||.!!||| ||| ||| ! ||| !! rArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal---AspGluAspLysTyrHisT 5064 : GCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC---GACGAGGACAAATATCATT : 5123 194 : heTyrValTyrLeuGlnLeuAlaTrpGlySerIleIleValValLeuThrIleIleAlaAla : 213 :!! :!! !!!.:!! ! ! ! !:!!!!::!!:!!! !..!.!! !|||..! yrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCys 5124 : ACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGC : 5183 214 : AspTrpPheTyrIleLeuIleIleHisPheAsnSerGlyLeuPheAlaValCysGlyValGl : 234 ||| !|||:!:! ! !:!:!!. ! !!!!||||||!!.|||:!!...||| ! AspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***Le 5184 : GATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATT : 5246 235 : nValLeuGluAlaThrMetAsnSerAsnLeuIleSerLysAsp : 248 !|||! !! ! ! !|||.!.!:!..!!!!:!!! !!:!:!! uValGlnGlyGlnLeuMetGluAsnGlyPheLeuTyrArgAsn 5247 : AGTTCAAGGACAATTAATGGAAAATGGTTTTCTTTATAGAAAT : 5290 vulgar: AmOr99 151 248 . LHQN01025741.1 5002 5290 + 117 M 34 102 G 1 0 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5003 5290 117 + . gene_id 1 ; sequence AmOr99 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5003 5290 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5003 5290 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 5003 5290 117 + . alignment_id 1 ; Query AmOr99 ; Align 5003 152 102 ; Align 5105 187 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 252 Query range: 301 -> 390 Target range: 3020 -> 2555 302 : AlaTyrThrIleAlaGlnLeuIleHisLeuPhePheLeuThrIleMetGlyGlnPheLeuIl : 322 .!!!:! !:!!!.!||| !.!!|||:!!|||||||||!.!:!!..!|||||||||:!!|| ThrPhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGlnGlyGlnPheValIl 3020 : ACGTTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGGACAATTTGTGAT : 2960 323 : eAsnAlaAsnGluGluThrPheLysThr{Il} >>>> Target Intron 1 >>>> { : 332 ||||||| !!!:||| !!:! ! ! !{||} 113 bp { eAsnAlaPheAspGluLeuTyrAspLys{Il}++ ++{ 2959 : AAACGCGTTCGACGAACTGTACGACAAG{AT}gt.........................ag{ : 2815 333 : e}TyrGluAlaAspTrpTyrAsnGlySerSerLysMetGlnSerLeuTyrValLeuValLeu : 352 |}||||||:!!.!.||||||||| !!!! !!!:!! |||:!!||||||||||||!.!||| e}TyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeu 2814 : A}TACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTG : 2757 353 : ArgLysCysLeuSerProProLysLeuThrGlyGlyGlyPheValAlaLeuAsnLeuAspSe : 373 |||!..||||||!:!|||||| !||||||!.!||||||.!...!.!!||||||||| || ArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSe 2756 : AGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATC : 2694 374 : rPheValGln >>>> Target Intron 2 >>>> IleLeuLysAlaSerPheSerTy : 384 ||||!.!:!! 85 bp |||:!!||||||||| !!||||| rPheAlaGlu++ ++IleIleLysAlaSerValSerTy 2693 : GTTCGCAGAGgt.........................agATCATCAAAGCATCTGTTTCCTA : 2576 385 : rTyrThrValPheArgSer : 390 ||||||||||.!.!:!!!! rTyrThrValMetGlnThr 2575 : CTACACGGTGATGCAGACC : 2556 vulgar: AmOr109 301 390 . LHQN01027734.1 3020 2555 - 252 M 30 90 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 44 132 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 2556 3020 252 - . gene_id 1 ; sequence AmOr109 ; gene_orientation + LHQN01027734.1 exonerate:protein2genome:local cds 2929 3020 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2929 3020 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 2927 2928 . - . intron_id 1 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 2816 2928 . - . intron_id 1 LHQN01027734.1 exonerate:protein2genome:local splice3 2816 2817 . - . intron_id 0 ; splice_site "AG" LHQN01027734.1 exonerate:protein2genome:local cds 2683 2815 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2683 2815 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 2681 2682 . - . intron_id 2 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 2598 2682 . - . intron_id 2 LHQN01027734.1 exonerate:protein2genome:local splice3 2598 2599 . - . intron_id 1 ; splice_site "AG" LHQN01027734.1 exonerate:protein2genome:local cds 2556 2597 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2556 2597 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 2556 3020 252 - . alignment_id 1 ; Query AmOr109 ; Align 3021 302 90 ; Align 2815 333 132 ; Align 2598 377 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 195 Query range: 126 -> 247 Target range: 1257 -> 894 127 : TyrLysValMetValTyrSerCysAlaPheMetPheLeuValIleProThrIleProProIl : 147 !:! !|||! !.!|||! !|||:!!|||:!!|||:!! !:!:||| !! !!! !!! PheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArgMe 1257 : TTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGAAT : 1197 148 : eLeuAsnIleValAlaProLeuAsnValSerArgSerArgGluPheIleTyrProThrTyrT : 168 ::!!||| ! ! !!! !|||:!!!!!! !||| ! ! !!:!! ||| !|||| tValAsnSerTyrLysThrGlnAsnIleThrProSerLeuProValValValProGlyTyrT 1196 : GGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGATATT : 1134 169 : yrPheValAspGluGlnLysTyrTyrTyrProIleLeuThrHisMetIleAlaValIleLeu : 188 |||||||||||||| !:!!||||||||| !|||:!! !||| ! ..!..!:!!||| yrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeu 1133 : ACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTG : 1074 189 : ValLeuSerSerValTyrLeuAlaCysAspThrAsnLeuValGlnIleValHisHisGlyCy : 209 :!!:!! ! !||||||! !||||||||||||!:!! !:!! !:!:|||!!.||| !|| IleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCy 1073 : ATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTG : 1011 210 : sAlaLeuLeuAlaIleSerGlyTyrHisPheLysHisAlaValAspAspValLysPheCysA : 230 |!.!|||!!!|||:!::!!|||! .!. ! !... ... :::...||| . sGlyLeuPheAlaValAlaGly***GluAsnLeuArgAspThrPhePheLeuSerPheSerS 1010 : CGGACTGTTCGCCGTGGCCGGGTGAGAAAACTTGAGagatacattttttctctcattttcgt : 948 231 : spGlyTyrTyrIleAspAlaSerMetAspGluThrTyrValLysIleArgGln : 247 ..||| !!||| ! ! !!!!:!!!!:...:!! ! :!! !:!!!:!:!! erGlyAsnTyrTyr***AspCysValGluArgSerGlnIleProLeuGlnGlu 947 : CGGGAAACTATTATTGAGATTGCGTGGAACGTTCGCAGATACCGCTTCAAGAA : 895 vulgar: AmOr109 126 247 . LHQN01027734.1 1257 894 - 195 M 121 363 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 895 1257 195 - . gene_id 2 ; sequence AmOr109 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 895 1257 . - . LHQN01027734.1 exonerate:protein2genome:local exon 895 1257 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 895 1257 195 - . alignment_id 2 ; Query AmOr109 ; Align 1258 127 363 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 286 -> 326 Target range: 504 -> 384 287 : LysLeuSerThrMetGluValGlyIleArgPhePheThrPheCysAlaTyrThrIleAlaGlnL : 308 :!!||||||||| !!!: !!! !||| !|||!:!! !!:!|||::!!:!|||:!:..!|||| GlnLeuSerThrSerAspPheAspIleAspPheTyrArgTyrCysSerPheThrLeuCysGlnL 504 : CAGCTGAGTACGTCGGATTTCGACATAGACTTCTACAGATATTGCAGTTTTACGTTGTGTCAAC : 441 309 : euIleHisLeuPhePheLeuThrIleMetGlyGlnPheLeuIleAsnAlaAsnGlu : 326 ||!!:||||||||| !!:!!! !:!!..!|||||||||:!!:!::!!:!! !||| euMetHisLeuPheValIleMetLeuGlnGlyGlnPheValLeuAspSerCysGlu 440 : TGATGCACCTGTTCGTTATCATGCTTCAGGGACAGTTCGTGCTGGATTCGTGCGAG : 385 vulgar: AmOr109 286 326 . LHQN01027734.1 504 384 - 100 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 385 504 100 - . gene_id 3 ; sequence AmOr109 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 385 504 . - . LHQN01027734.1 exonerate:protein2genome:local exon 385 504 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 385 504 100 - . alignment_id 3 ; Query AmOr109 ; Align 505 287 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 168 Query range: 126 -> 216 Target range: 1257 -> 987 127 : TyrGluValSerIleTyrSerCysGlyPheMetPheLeuSerMetProSerIleProLeuIl : 147 !:! !|||!:! |||! !|||..!|||:!!|||:!!..!:!!|||!!!! !!! !!! PheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArgMe 1257 : TTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGAAT : 1197 148 : eMetAsnValIleMetProLeuAsnGluSerArgSerArgGluLeuValTyrProSerTyrT : 168 ::!!||| ! !! ! !!! !||| !!!!! !||| ! !:!!||| |||.!!|||| tValAsnSerTyrLysThrGlnAsnIleThrProSerLeuProValValValProGlyTyrT 1196 : GGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGATATT : 1134 169 : yrPheValAspGluGlnLysTyrTyrTyrLeuIleThrGlyHisMetLeuAlaValCysLeu : 188 |||||||||||||| !:!!|||||||||! !|||! ! !||| !..!..! !||| yrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeu 1133 : ACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTG : 1074 189 : GlyHisValPheValTyrIleAlaCysAspIleAsnLeuIleHisValValHisHisGlyCy : 209 ! ||| ! |||||| !|||||||||! !!:!! !!!: :!!|||!!.||| !|| IleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCy 1073 : ATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTG : 1011 210 : sAlaLeuLeuThrIleSerGly : 216 |!.!|||!!!.!!:!::!!||| sGlyLeuPheAlaValAlaGly 1010 : CGGACTGTTCGCCGTGGCCGGG : 988 vulgar: AmOr107 126 216 . LHQN01027734.1 1257 987 - 168 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 988 1257 168 - . gene_id 1 ; sequence AmOr107 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 988 1257 . - . LHQN01027734.1 exonerate:protein2genome:local exon 988 1257 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 988 1257 168 - . alignment_id 1 ; Query AmOr107 ; Align 1258 127 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 241 Query range: 302 -> 378 Target range: 3017 -> 2676 303 : TyrThrValAlaGlnLeuThrHisLeuPhePheLeuThrIleMetGlyGlnPheLeuIleAs : 323 !:! !|||!.!||| ! !|||:!!|||||||||!.!:!!..!|||||||||:!!||||| PhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGlnGlyGlnPheValIleAs 3017 : TTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGGACAATTTGTGATAAA : 2957 324 : nAlaAsnAspGluIlePheAsnThr{Il} >>>> Target Intron 1 >>>> {e}T : 333 |||| !||||||:!:!:!:!!! !{||} 113 bp {|}| nAlaPheAspGluLeuTyrAspLys{Il}++ ++{e}T 2956 : CGCGTTCGACGAACTGTACGACAAG{AT}gt.........................ag{A}T : 2814 334 : yrGluAlaHisTrpTyrAsnGlySerSerArgThrGlnSerLeuTyrValLeuValLeuArg : 353 |||||:!!!!.||||||||| !!!! !!|||||||||:!!||||||||||||!.!|||||| yrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeuArg 2813 : ACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTGAGA : 2754 354 : LysCysLeuAsnProProThrLeuThrGlyGlyGlyLeuIleValLeuAsnLeuAspSerPh : 374 !..||||||||||||||| !||||||!.!||||||:!!! ..!||||||||| ||||| SerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSerPh 2753 : AGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATCGTT : 2691 375 : eValGlnIleLeu : 378 |!.!:!!:!::!! eAlaGluValIle 2690 : CGCAGAGGTGATT : 2677 vulgar: AmOr108 302 378 . LHQN01027734.1 3017 2676 - 241 M 29 87 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 2677 3017 241 - . gene_id 1 ; sequence AmOr108 ; gene_orientation + LHQN01027734.1 exonerate:protein2genome:local cds 2929 3017 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2929 3017 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 2927 2928 . - . intron_id 1 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 2816 2928 . - . intron_id 1 LHQN01027734.1 exonerate:protein2genome:local splice3 2816 2817 . - . intron_id 0 ; splice_site "AG" LHQN01027734.1 exonerate:protein2genome:local cds 2677 2815 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2677 2815 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 2677 3017 241 - . alignment_id 1 ; Query AmOr108 ; Align 3018 303 87 ; Align 2815 333 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 175 Query range: 117 -> 233 Target range: 1284 -> 936 118 : ArgArgAlaThrThrLeuCysIlePheTyrGluValIleValIlePheSerAlaIleMetPh : 138 :::::: !.!!|||||| ! !:! !|||! !!.! !.!!!!!:!!.!!:!!|| LysGlnLeuAlaThrLeuAspTrpThrPheProValAsnAlaTyrIleCysSerPheLeuPh 1284 : aaacaattAGCAACTCTGGATTGGACATTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTT : 1224 139 : eIleMetIleProThrIleProProIleLeuAsnIleIleMetProLeuAsnGluSerArgA : 159 ||||...:!:||| !! !!! !!!::!!||| !! ! !!! !||| !!!!! !. eIleGlnValProTrpThrThrArgMetValAsnSerTyrLysThrGlnAsnIleThrProS 1223 : CATACAAGTGCCATGGACGACCCGAATGGTGAACTCGTACAAGACACAGAATATAACGCCAA : 1161 160 : spArgGluPheIleTyrProThrTyrPhePheIleAspGluGluLysTyrTyrTyrProIle : 179 .! ! ! !!:!! ||| !|||!:!|||:!!||||||! !:!!||||||||| !||| erLeuProValValValProGlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIle 1160 : GTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATC : 1101 180 : LeuThrTyrMetAlaThrValIleLeuIleValSerSerValTyrLeuAlaCysAspThrAs : 200 :!! !:!! .!! !..!:!!||||||||| ! !||||||! !||||||||||||!: IleLeuHisGlyThrCysThrValLeuIleValValValValTyrCysAlaCysAspThrSe 1100 : ATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAG : 1038 201 : nLeuValGlnIleValHisHisGlyCysAlaLeuLeuAlaIleSerGlyTyrHisPheLysH : 221 !! !:!! !:!:|||!!.||| !|||!.!|||!!!|||:!::!!|||! .!. ! !. rTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly***GluAsnLeuA 1037 : TTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGGTGAGAAAACTTGA : 975 222 : isAlaValAspAspMetLysPheSerAsnGlyAsnTyr : 233 .. ... :::...||||||:::||||||||| rgAspThrPhePheLeuSerPheSerSerGlyAsnTyr 974 : GagatacattttttctctcattttcgtCGGGAAACTAT : 937 vulgar: AmOr108 117 233 . LHQN01027734.1 1284 936 - 175 M 116 348 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 937 1284 175 - . gene_id 2 ; sequence AmOr108 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 937 1284 . - . LHQN01027734.1 exonerate:protein2genome:local exon 937 1284 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 937 1284 175 - . alignment_id 2 ; Query AmOr108 ; Align 1285 118 348 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 491 Query range: 128 -> 347 Target range: 1251 -> 315 129 : IleAsnAlaTyrCysCysSerLeuLeuPheLeuGlnValProTrpThrAlaArgLeuLeuTy : 149 :!:||||||||| !||||||!!!||||||:!!|||||||||||||||.!!|||:!!:!! ! ValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArgMetValAs 1251 : GTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGAATGGTGAA : 1191 150 : rMetIleLysSerGlnAsnThrSerProProMetLeuTyrValIleProGlyTyrTyrPheV : 170 ! ! !|||!!!||||||! !!!!||| !:!!! ! !|||:!!|||||||||||||||| nSerTyrLysThrGlnAsnIleThrProSerLeuProValValValProGlyTyrTyrPheV 1190 : CTCGTACAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCG : 1128 171 : alAspAspAspArgAspTyrTyrTyrPheIleGlnLeuHisMetSerLeuSerIleIleMet : 190 || |||!!: !!!:|||||||||!:!||| !|||||| !!!! !!!!:!!:!:!!: al---AspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeuIle 1127 : TC---GACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTGATT : 1071 191 : ValAlaAsnValTyrValAlaTyrAspThrCysTyrMetValPheValGlnHisValCysGl : 211 |||!.! |||||| !|||! !|||||| !!|||||||||.!.|||||||||..!||||| ValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGl 1070 : GTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGG : 1008 212 : yLeuLeuAlaValAla{Gl} >>>> Target Intron 1 >>>> {y}TyrArgPheL : 221 ||||!!!|||||||||{||} 79 bp {|}|||||||||| yLeuPheAlaValAla{Gl}++ ++{y}TyrArgPheL 1007 : ACTGTTCGCCGTGGCC{GG}gt.........................ag{A}TACCGCTTCA : 899 222 : ysHisAlaIle<->AspAspSerAlaSerLysAsnSer<-><->GluGluLysIleLysGlu : 238 ||:!!:!!||| !!:|||!:!::! !|||...!.! !!:.!. !! |||||| ysAsnSerIleCysGluAspAsnSerValLysGlyLysTyrPheAspHisTrpThrLysGlu 898 : AGAATTCAATTTGCGAGGACAATAGCGTGAAGGGGAAGTATTTCGACCACTGGACGAAAGAG : 839 239 : ThrCysLysLysIleArgSerSerIleGlnGlyHisGluGlyAlaIle{Ar} >>>> Tar : 255 .!!! !|||!!. !!! !|||||||||||||||:!! !!||||||{!.} AlaTyrLysAsnAlaCysPheSerIleGlnGlyHisGlnArgAlaIle{As}++ 838 : GCGTACAAGAACGCGTGTTTCTCCATTCAGGGACATCAACGTGCTATA{AA}gt........ : 784 256 : get Intron 2 >>>> {g}TyrLeuLysLysIleGluAspThrHisValAsnLeuLeuP : 269 113 bp {!}!:!:!!|||:!!|||||| ! !|||! !!..! !|||| ++{n}PheValLysGluIleGluArgGlyHisAspThrTyrLeuP 783 : .................ag{C}TTTGTAAAGGAAATTGAACGCGGCCATGACACGTACCTTT : 633 270 : heIleSerLeuGlyLeuIleIleMetCysPheSerIleThrLeuLeuLys >>>> Targe : 286 ||! !!!!|||!.!|||:!:|||:!:||||||||||||||||||:!!||| heThrCysLeuAlaLeuValIleLeuCysPheSerIleThrLeuIleLys++ 632 : TCACCTGCTTAGCCTTGGTGATTCTATGCTTCAGTATTACTCTGATCAAGgt.......... : 580 287 : t Intron 3 >>>> ValValThrMetAspTyrCysLeuAspPheTyrLysTyrSerSer : 300 81 bp :!! !||| !|||!:! !:!!|||||||||!:!|||!!!||| ++LeuSerThrSerAspPheAspIleAspPheTyrArgTyrCysSer 579 : ...............agCTGAGTACGTCGGATTTCGACATAGACTTCTACAGATATTGCAGT : 459 301 : PheLeuIleValGlnLeuMetHisLeuCysTyrValMetIleGlnGlyGlnPheValIleAs : 321 ||| !:!: !|||||||||||||||! ! !:!!|||:!!|||||||||||||||:!:|| PheThrLeuCysGlnLeuMetHisLeuPheValIleMetLeuGlnGlyGlnPheValLeuAs 458 : TTTACGTTGTGTCAACTGATGCACCTGTTCGTTATCATGCTTCAGGGACAGTTCGTGCTGGA : 396 322 : pSerCysAsnGluIleTyrTyrSerIleTyrGluAlaSerTrpTyrAsnIleAsnProLysI : 342 |||||||.!...!|||:!! ! :!!!!:! ! !! !.!! !!||| !||| !!::| pSerCysGluArgIleHisGluAlaMet***ValGluGlyIleAsnAsnArgAsnLysArgI 395 : TTCGTGCGAGAGAATTCACGAGGCGATGTGAGTAGAGGGAATAAATAATCGCAACAAAAgga : 333 343 : leGlnAlaLeuTyrIle : 347 ||... ...:::::: leAsnTyrPhePheLeu 332 : taaattatttcttcctg : 316 vulgar: AmOr113 128 347 . LHQN01027734.1 1251 315 - 491 M 42 126 G 1 0 M 45 135 S 0 2 5 0 2 I 0 75 3 0 2 S 1 1 M 7 21 G 0 3 M 8 24 G 0 6 M 22 66 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 30 90 5 0 2 I 0 77 3 0 2 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 316 1251 491 - . gene_id 1 ; sequence AmOr113 ; gene_orientation + LHQN01027734.1 exonerate:protein2genome:local cds 989 1251 . - . LHQN01027734.1 exonerate:protein2genome:local exon 989 1251 . - . insertions 0 ; deletions 1 LHQN01027734.1 exonerate:protein2genome:local splice5 987 988 . - . intron_id 1 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 910 988 . - . intron_id 1 LHQN01027734.1 exonerate:protein2genome:local splice3 910 911 . - . intron_id 0 ; splice_site "AG" LHQN01027734.1 exonerate:protein2genome:local cds 787 909 . - . LHQN01027734.1 exonerate:protein2genome:local exon 787 909 . - . insertions 9 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 785 786 . - . intron_id 2 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 674 786 . - . intron_id 2 LHQN01027734.1 exonerate:protein2genome:local splice3 674 675 . - . intron_id 1 ; splice_site "AG" LHQN01027734.1 exonerate:protein2genome:local cds 583 673 . - . LHQN01027734.1 exonerate:protein2genome:local exon 583 673 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 581 582 . - . intron_id 3 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 502 582 . - . intron_id 3 LHQN01027734.1 exonerate:protein2genome:local splice3 502 503 . - . intron_id 2 ; splice_site "AG" LHQN01027734.1 exonerate:protein2genome:local cds 316 501 . - . LHQN01027734.1 exonerate:protein2genome:local exon 316 501 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 316 1251 491 - . alignment_id 1 ; Query AmOr113 ; Align 1252 129 126 ; Align 1126 172 135 ; Align 909 218 21 ; Align 885 225 24 ; Align 855 233 66 ; Align 673 256 90 ; Align 502 286 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 262 Query range: 297 -> 388 Target range: 3026 -> 2555 298 : TyrSerSerPheLeuIleValGlnLeuMetHisLeuCysTyrValMetIleGlnGlyGlnPh : 318 :!!.!!!!!|||!!!:!!! !||| !.!.|||:!!! !!:!:!!! :!!||||||||||| HisGlyThrPhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGlnGlyGlnPh 3026 : CACGGAACGTTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGGACAATT : 2966 319 : eValIleAspSerCysAsnGluIleTyrTyrSer{Il} >>>> Target Intron 1 > : 330 |||||||:!!:!!! !:!!|||:!:||| !!!.!{||} 113 bp eValIleAsnAlaPheAspGluLeuTyrAspLys{Il}++ 2965 : TGTGATAAACGCGTTCGACGAACTGTACGACAAG{AT}gt...................... : 2926 331 : >>> {e}TyrGluAlaSerTrpTyrAsnIleAsnProLysIleGlnAlaLeuTyrIleLeu : 348 {|}||||||:!!..!|||||||||.!!!.!|||!:!! !||||||||||||:!!||| ++{e}TyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeu 2925 : ...ag{A}TACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTG : 2763 349 : AlaLeuArgArgSerLeuThrProProArgLeuThrAlaGlyGlyLeuIleGluLeuAsnMe : 369 |||||||||!!!!!!|||!.!||||||! !|||||||||||||||:!!! !||||||:! AlaLeuArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLe 2762 : GCATTGAGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCT : 2700 370 : tGlnSerPheSerGlu >>>> Target Intron 2 >>>> ValIleLysLeuSerIl : 380 :!:!||||||:!!||| 85 bp :!!|||||| !|||:! uArgSerPheAlaGlu++ ++IleIleLysAlaSerVa 2699 : ACGATCGTTCGCAGAGgt.........................agATCATCAAAGCATCTGT : 2582 381 : eSerTyrTyrThrValLeuArgSer : 388 !|||||||||||||||:!!!:!!!! lSerTyrTyrThrValMetGlnThr 2581 : TTCCTACTACACGGTGATGCAGACC : 2556 vulgar: AmOr113 297 388 . LHQN01027734.1 3026 2555 - 262 M 32 96 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 44 132 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 2556 3026 262 - . gene_id 2 ; sequence AmOr113 ; gene_orientation + LHQN01027734.1 exonerate:protein2genome:local cds 2929 3026 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2929 3026 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 2927 2928 . - . intron_id 1 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 2816 2928 . - . intron_id 1 LHQN01027734.1 exonerate:protein2genome:local splice3 2816 2817 . - . intron_id 0 ; splice_site "AG" LHQN01027734.1 exonerate:protein2genome:local cds 2683 2815 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2683 2815 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 2681 2682 . - . intron_id 2 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 2598 2682 . - . intron_id 2 LHQN01027734.1 exonerate:protein2genome:local splice3 2598 2599 . - . intron_id 1 ; splice_site "AG" LHQN01027734.1 exonerate:protein2genome:local cds 2556 2597 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2556 2597 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 2556 3026 262 - . alignment_id 2 ; Query AmOr113 ; Align 3027 298 96 ; Align 2815 331 132 ; Align 2598 375 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr115 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 324 -> 382 Target range: 4381 -> 4207 325 : GlnSerThrGlyIleGlyLeuSerThrTyrHisCysAsnTrpTyrAspLeuProSerArgAr : 345 |||!!! ! !:!!||| ! !..!||| :!!|||||| !!||||||..!||||| GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 346 : gAlaValLeuLeuMetIleValIleArgArgAlaAsnValSerPheGlnIleThrAlaGlyL : 366 | !:!! !|||!!::!::!!|||! !|||:!!|||||| ! !!:!!||||||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 367 : ysPheSerProPheSerLeuGluPhePheAsnAlaValLeuLysThrSer : 382 ||... ...|||||| ! |||..!! !||| !:!!|||!:! ysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 4208 vulgar: AmOr115 324 382 . LHQN01027980.1 4381 4207 - 107 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4208 4381 107 - . gene_id 1 ; sequence AmOr115 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4208 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4208 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4208 4381 107 - . alignment_id 1 ; Query AmOr115 ; Align 4382 325 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 348 Query range: 255 -> 375 Target range: 8132 -> 7629 256 : TyrLeuLysLysIleGluAspThrHisValAsnLeuLeuPheIleSerLeuGlyLeuIleIl : 276 |||:!!! !:!!||||||.!...!|||! !!..! !|||||||||:!!:!!|||:!!:!!!! TyrIleThrGluIleGluGlnValHisGlyThrTyrLeuPheIleAlaValGlyMetValMe 8132 : TATATTACAGAAATTGAACAAGTTCATGGCACGTACCTCTTCATAGCAGTGGGAATGGTTAT : 8072 277 : eMetCysPheSerIleThrLeuLeuLys >>>> Target Intron 1 >>>> ValVa : 287 :|||! |||||||||||||||:!!!:! 73 bp ||| tMetSerPheSerIleThrLeuValArg++ ++ValSe 8071 : GATGTCATTCAGTATCACGTTAGTCAGGgt.........................agGTATC : 7966 288 : lThrMetAspTyrCysLeuAspPheTyrLysTyrSerSerPheLeuIleValGlnLeuMetH : 308 !||||||:!! !|||:!!!!:||||||||||||!!!.!!||||||:!:|||||||||:!:| rThrMetAsnProCysValGluPheTyrLysTyrCysGlyPheLeuValValGlnLeuValH 7965 : CACGATGAACCCTTGCGTGGAGTTCTACAAGTATTGCGGTTTCTTGGTGGTGCAACTGGTAC : 7903 309 : isLeuCysTyrValMetIleGlnGlyGlnPheValIleAspSerCysAsnGluIleTyrTyr : 328 ||||| !!:!:!! |||||||||!!.|||||||||! !||| !:!! !! !||| !! isLeuLeuPheLeuSerIleGlnGlyHisPheValIleValSerHisAspThrThrTyrAsp 7902 : ATTTGCTTTTCCTTTCTATCCAGGGACACTTCGTTATAGTCTCGCATGACACGACTTACGAT : 7843 329 : Ser{Il} >>>> Target Intron 2 >>>> {e}TyrGluAlaSerTrpTyrAsnIl : 338 !:!{||} 70 bp {|}|||...|||!!!||||||||| Asn{Il}++ ++{e}TyrSerAlaThrTrpTyrAsnGl 7842 : AAT{AT}gt.........................ag{A}TACAGCGCTACATGGTACAACGG : 7743 339 : eAsnProLysIleGlnAlaLeuTyrIleLeuAlaLeuArgArgSerLeuThrProProArgL : 359 !!..||||||:!:||||||||||||:!:|||||||||||||||!:!||||||||||||! !: yThrProLysValGlnAlaLeuTyrValLeuAlaLeuArgArgAsnLeuThrProProLeuI 7742 : TACACCGAAAGTGCAAGCTTTATACGTGCTAGCTTTGAGAAGGAACTTGACTCCACCGCTGA : 7680 360 : euThrAlaGlyGlyLeuIleGluLeuAsnMetGlnSerPheSerGluVal : 375 !!||||||||||||||||||...||||||:!!:!!!!!|||:!!|||||| leThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGluVal 7679 : TTACTGCCGGAGGACTGATCTCCTTGAATTTGGAGACTTTCGCGGAGGTA : 7630 vulgar: AmOr113 255 375 . LHQN01028732.1 8132 7629 - 348 M 30 90 5 0 2 I 0 69 3 0 2 M 44 132 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 7630 8132 348 - . gene_id 1 ; sequence AmOr113 ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 8043 8132 . - . LHQN01028732.1 exonerate:protein2genome:local exon 8043 8132 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 8041 8042 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 7970 8042 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 7970 7971 . - . intron_id 0 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 7836 7969 . - . LHQN01028732.1 exonerate:protein2genome:local exon 7836 7969 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 7834 7835 . - . intron_id 2 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 7766 7835 . - . intron_id 2 LHQN01028732.1 exonerate:protein2genome:local splice3 7766 7767 . - . intron_id 1 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 7630 7765 . - . LHQN01028732.1 exonerate:protein2genome:local exon 7630 7765 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 7630 8132 348 - . alignment_id 1 ; Query AmOr113 ; Align 8133 256 90 ; Align 7970 286 132 ; Align 7765 331 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 262 Query range: 297 -> 388 Target range: 1704 -> 1233 298 : TyrSerSerPheLeuIleValGlnLeuMetHisLeuCysTyrValMetIleGlnGlyGlnPh : 318 :!!.!!!!!|||!!!:!!! !||| !.!.|||:!!! !!:!:!!! :!!||||||||||| HisGlyThrPhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGlnGlyGlnPh 1704 : CACGGAACGTTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGGACAATT : 1644 319 : eValIleAspSerCysAsnGluIleTyrTyrSer{Il} >>>> Target Intron 1 > : 330 |||||||:!!:!!! !:!!|||:!:||| !!!.!{||} 113 bp eValIleAsnAlaPheAspGluLeuTyrAspLys{Il}++ 1643 : TGTGATAAACGCGTTCGACGAACTGTACGACAAG{AT}gt...................... : 1604 331 : >>> {e}TyrGluAlaSerTrpTyrAsnIleAsnProLysIleGlnAlaLeuTyrIleLeu : 348 {|}||||||:!!..!|||||||||.!!!.!|||!:!! !||||||||||||:!!||| ++{e}TyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeu 1603 : ...ag{A}TACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTG : 1441 349 : AlaLeuArgArgSerLeuThrProProArgLeuThrAlaGlyGlyLeuIleGluLeuAsnMe : 369 |||||||||!!!!!!|||!.!||||||! !|||||||||||||||:!!! !||||||:! AlaLeuArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLe 1440 : GCATTGAGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCT : 1378 370 : tGlnSerPheSerGlu >>>> Target Intron 2 >>>> ValIleLysLeuSerIl : 380 :!:!||||||:!!||| 85 bp :!!|||||| !|||:! uArgSerPheAlaGlu++ ++IleIleLysAlaSerVa 1377 : ACGATCGTTCGCAGAGgt.........................agATCATCAAAGCATCTGT : 1260 381 : eSerTyrTyrThrValLeuArgSer : 388 !|||||||||||||||:!!!:!!!! lSerTyrTyrThrValMetGlnThr 1259 : TTCCTACTACACGGTGATGCAGACC : 1234 vulgar: AmOr113 297 388 . LHQN01028732.1 1704 1233 - 262 M 32 96 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 44 132 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1234 1704 262 - . gene_id 2 ; sequence AmOr113 ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 1607 1704 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1607 1704 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 1605 1606 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 1494 1606 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 1494 1495 . - . intron_id 0 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 1361 1493 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1361 1493 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 1359 1360 . - . intron_id 2 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 1276 1360 . - . intron_id 2 LHQN01028732.1 exonerate:protein2genome:local splice3 1276 1277 . - . intron_id 1 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 1234 1275 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1234 1275 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1234 1704 262 - . alignment_id 2 ; Query AmOr113 ; Align 1705 298 96 ; Align 1493 331 132 ; Align 1276 375 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 184 Query range: 120 -> 217 Target range: 5708 -> 5420 121 : SerPheLeuAlaMetPheTyrPheIleAsnAlaTyrCysCysSerLeuLeuPheLeuGlnVa : 141 ||||||! ! !! !||| ! :!::!! !! ! |||:!! !||||||:!! :! SerPheCysPheThrPheGluLysValHisIleSerLeuCysAlaAlaLeuPheMetCysLe 5708 : TCATTCTGTTTCACGTTTGAAAAAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTT : 5648 142 : lProTrpThrAlaArgLeuLeuTyrMetIleLysSerGlnAsnThrSerProProMetLeuT : 162 !|||!::..!:!!! !:!!||| !!!!::!!! ! !! !||| !!!!! ! !! !|||! uProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuP 5647 : GCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGT : 5585 163 : yrValIleProGlyTyrTyrPheValAspAspAspArgAspTyrTyrTyrPheIleGlnLeu : 182 :!||| !|||!.!|||||||||||||||!!:|||!:! ||| !|||!!.||| ! ! heValTyrProAlaTyrTyrPheValAspGluAspLys---TyrArgTyrLeuIleValGly 5584 : TCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAA---TATCGTTACTTGATCGTAGGG : 5528 183 : HisMetSerLeuSerIleIleMetValAlaAsnValTyrValAlaTyrAspThrCysTyrMe : 203 ||||||! !||| !:!::!!|||:!! !::!|||!:! !|||! !|||.!! !|||:! HisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrVa 5527 : CATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGT : 5465 204 : tValPheValGlnHisValCysGlyLeuLeuAlaValAlaGly : 217 ! ! !|||||||||!.!|||||||||||||||:!!|||||| lTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5464 : GTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5421 vulgar: AmOr113 120 217 . LHQN01028732.1 5708 5420 - 184 M 54 162 G 1 0 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5708 184 - . gene_id 3 ; sequence AmOr113 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5708 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5708 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5708 184 - . alignment_id 3 ; Query AmOr113 ; Align 5709 121 162 ; Align 5547 176 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 162 Query range: 330 -> 384 Target range: 4475 -> 4313 331 : TyrGluAlaSerTrpTyrAsnIleAsnProLysIleGlnAlaLeuTyrIleLeuAlaLeuAr : 351 ||||||:!!!!!||||||||| !::: !|||! |||||||||||||||||||||||||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeuAr 4475 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTACG : 4415 352 : gArgSerLeuThrProProArgLeuThrAlaGlyGlyLeuIleGluLeuAsnMetGlnSerP : 372 |!!!||||||!.!|||||| !|||||||||||||||!!!||| !||||||:!::!!!!!| gSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLysThrP 4414 : GAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAGACCT : 4352 373 : heSerGluValIleLysLeuSerIleSerTyrTyrThr : 384 |||||||||||! !! !..!|||..! !!|||:!! heSerGluValThrTrpArgGlnIleGlnAspTyrSer 4351 : TCTCAGAGGTAACGTGGCGACAAATACAAGATTACTCG : 4314 vulgar: AmOr113 330 384 . LHQN01028732.1 4475 4313 - 162 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 4314 4475 162 - . gene_id 4 ; sequence AmOr113 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 4314 4475 . - . LHQN01028732.1 exonerate:protein2genome:local exon 4314 4475 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 4314 4475 162 - . alignment_id 4 ; Query AmOr113 ; Align 4476 331 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 0 -> 54 Target range: 6291 -> 6129 1 : MetAspSerAspIleLeuGluLysArgPheLeuLysIleThrLysArgPheAlaLysLeuSe : 21 ||||||:!! !! ||||||||||||!:!|||!:!|||!.!|||!:!.!!!.!! !|||!! MetAspAlaIleThrLeuGluLysArgTyrLeuArgIleAsnLysLysLeuGlyMetLeuTh 6291 : ATGGATGCGATCACGTTAGAGAAACGTTACTTGAGAATCAACAAGAAGCTCGGCATGCTAAC : 6231 22 : rGlyIleTrpProAspGlnAsnLysTyrLeuLysTyrIleSerTrpIleIleIleTyrValI : 42 !|||:!:|||||| !!|||!!.!..! ! !|||!::|||||| ! ! !:!!:!: ! !!: rGlyValTrpProTyrGlnLysSerSerProLysTrpIleSerArgThrValValLeuPheV 6230 : CGGTGTGTGGCCCTATCAAAAGAGCTCGCCAAAATGGATCAGTCGAACCGTAGTGCTCTTTG : 6168 43 : leSerIleProSerIleValValGlnIleAlaArgIle : 54 !!! !||||||!!! !|||..!|||:!! :::||| alIleIleProCysTyrValThrGlnValGluLysIle 6167 : TAATAATACCTTGTTACGTTACACAGGTAgaaaaaata : 6130 vulgar: AmOr113 0 54 . LHQN01028732.1 6291 6129 - 117 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 6130 6291 117 - . gene_id 5 ; sequence AmOr113 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 6130 6291 . - . LHQN01028732.1 exonerate:protein2genome:local exon 6130 6291 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 6130 6291 117 - . alignment_id 5 ; Query AmOr113 ; Align 6292 1 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 246 Query range: 125 -> 240 Target range: 5693 -> 5348 126 : PheTyrGluValIleValIlePheSerAlaIleMetPheIleMetIleProThrIleProPr : 146 ||| ! :!!||| !:!! !!.!!!||| !:!:|||!!: :!:||| !:!: !!|| PheGluLysValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerPr 5693 : TTTGAAAAAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCC : 5633 147 : oIleLeuAsnIleIleMetProLeuAsnGluSerArgAspArgGluPheIleTyrProThrT : 167 |||||||:!!|||:!!|||||||||||||||!!!|||! ||| !|||:!!||||||.!!| oIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaT 5632 : GATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTT : 5570 168 : yrPhePheIleAspGluGluLysTyrTyrTyrProIleLeuThrTyrMetAlaThrValIle : 187 ||!:!|||:!!||||||!!:|||||| !||| !|||:!! !:!!||| ! !|||:!: yrTyrPheValAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValVal 5569 : ACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTG : 5510 188 : LeuIleValSerSerValTyrLeuAlaCysAspThrAsnLeuValGlnIleValHisHisGl : 208 :!!!!::!!! !||||||!:!! !|||||||||.!!|||! !||| ! !|||!!.|||!. ValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAl 5509 : GTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGC : 5447 209 : yCysAlaLeuLeuAlaIleSerGlyTyrHisPheLysHisAlaValAspAspMetLysPheS : 229 !|||!.!||||||||||||:!!|||!! !!:!! !:!! !!:! ||| aCysGlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGluAsnGlyPheL 5446 : TTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAATGGTTTTC : 5384 230 : erAsnGlyAsnTyrIleAspLeuLeuMetAspGlu : 240 ! !! !!|||!:!:!!! !!!!! !:!:! !||| euTyrArgAsnPheValGlyPheCysLeuAlaGlu 5383 : TTTATAGAAATTTCGTTGGCTTTTGTTTAGCTGAA : 5349 vulgar: AmOr108 125 240 . LHQN01028732.1 5693 5348 - 246 M 115 345 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5349 5693 246 - . gene_id 1 ; sequence AmOr108 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5349 5693 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5349 5693 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5349 5693 246 - . alignment_id 1 ; Query AmOr108 ; Align 5694 126 345 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 241 Query range: 302 -> 378 Target range: 1695 -> 1354 303 : TyrThrValAlaGlnLeuThrHisLeuPhePheLeuThrIleMetGlyGlnPheLeuIleAs : 323 !:! !|||!.!||| ! !|||:!!|||||||||!.!:!!..!|||||||||:!!||||| PhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGlnGlyGlnPheValIleAs 1695 : TTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGGACAATTTGTGATAAA : 1635 324 : nAlaAsnAspGluIlePheAsnThr{Il} >>>> Target Intron 1 >>>> {e}T : 333 |||| !||||||:!:!:!:!!! !{||} 113 bp {|}| nAlaPheAspGluLeuTyrAspLys{Il}++ ++{e}T 1634 : CGCGTTCGACGAACTGTACGACAAG{AT}gt.........................ag{A}T : 1492 334 : yrGluAlaHisTrpTyrAsnGlySerSerArgThrGlnSerLeuTyrValLeuValLeuArg : 353 |||||:!!!!.||||||||| !!!! !!|||||||||:!!||||||||||||!.!|||||| yrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeuArg 1491 : ACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTGAGA : 1432 354 : LysCysLeuAsnProProThrLeuThrGlyGlyGlyLeuIleValLeuAsnLeuAspSerPh : 374 !..||||||||||||||| !||||||!.!||||||:!!! ..!||||||||| ||||| SerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSerPh 1431 : AGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATCGTT : 1369 375 : eValGlnIleLeu : 378 |!.!:!!:!::!! eAlaGluValIle 1368 : CGCAGAGGTGATT : 1355 vulgar: AmOr108 302 378 . LHQN01028732.1 1695 1354 - 241 M 29 87 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1355 1695 241 - . gene_id 2 ; sequence AmOr108 ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 1607 1695 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1607 1695 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 1605 1606 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 1494 1606 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 1494 1495 . - . intron_id 0 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 1355 1493 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1355 1493 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1355 1695 241 - . alignment_id 2 ; Query AmOr108 ; Align 1696 303 87 ; Align 1493 333 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 148 Query range: 332 -> 377 Target range: 4475 -> 4340 333 : TyrGluAlaHisTrpTyrAsnGlySerSerArgThrGlnSerLeuTyrValLeuValLeuAr : 353 ||||||:!! |||||||||..!|||!!!!:!||||||:!!||||||:!!|||!.!||||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeuAr 4475 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTACG : 4415 354 : gLysCysLeuAsnProProThrLeuThrGlyGlyGlyLeuIleValLeuAsnLeuAspSerP : 374 |!.. !!|||||||||||| !||||||!.!||||||!!!|||..!||||||||| ! !!!| gSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLysThrP 4414 : GAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAGACCT : 4352 375 : heValGlnIle : 377 || !:!!:!! heSerGluVal 4351 : TCTCAGAGGTA : 4341 vulgar: AmOr108 332 377 . LHQN01028732.1 4475 4340 - 148 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 4341 4475 148 - . gene_id 3 ; sequence AmOr108 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 4341 4475 . - . LHQN01028732.1 exonerate:protein2genome:local exon 4341 4475 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 4341 4475 148 - . alignment_id 3 ; Query AmOr108 ; Align 4476 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 144 Query range: 332 -> 377 Target range: 7764 -> 7629 333 : TyrGluAlaHisTrpTyrAsnGlySerSerArgThrGlnSerLeuTyrValLeuValLeuAr : 353 |||...||| ||||||||||||!!! !!!:!..!|||:!!||||||||||||!.!||||| TyrSerAlaThrTrpTyrAsnGlyThrProLysValGlnAlaLeuTyrValLeuAlaLeuAr 7764 : TACAGCGCTACATGGTACAACGGTACACCGAAAGTGCAAGCTTTATACGTGCTAGCTTTGAG : 7704 354 : gLysCysLeuAsnProProThrLeuThrGlyGlyGlyLeuIleValLeuAsnLeuAspSerP : 374 |!:! !|||!.!|||||| !:!!|||!.!|||||||||||| !|||||||||!!:!!!| gArgAsnLeuThrProProLeuIleThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrP 7703 : AAGGAACTTGACTCCACCGCTGATTACTGCCGGAGGACTGATCTCCTTGAATTTGGAGACTT : 7641 375 : heValGlnIle : 377 ||!.!:!!:!! heAlaGluVal 7640 : TCGCGGAGGTA : 7630 vulgar: AmOr108 332 377 . LHQN01028732.1 7764 7629 - 144 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 7630 7764 144 - . gene_id 4 ; sequence AmOr108 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 7630 7764 . - . LHQN01028732.1 exonerate:protein2genome:local exon 7630 7764 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 7630 7764 144 - . alignment_id 4 ; Query AmOr108 ; Align 7765 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr108 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 0 -> 54 Target range: 6291 -> 6129 1 : MetAsnLysGlnAlaIleGluAspGlnTyrLeuArgIleAsnLysPhePheGlyGlnLeuVa : 21 |||:!! ! .!!:!!||| ! !::|||||||||||||||||| .!!|||..!|||.. MetAspAlaIleThrLeuGluLysArgTyrLeuArgIleAsnLysLysLeuGlyMetLeuTh 6291 : ATGGATGCGATCACGTTAGAGAAACGTTACTTGAGAATCAACAAGAAGCTCGGCATGCTAAC : 6231 22 : lGlyValTrpProTyrGlnGluArgPheThrLysPheCysIleArgLeuThrIlePheAlaI : 42 !||||||||||||||||||:!!!!!! !!|||!:: !! !||| !..!:!:.!! !: rGlyValTrpProTyrGlnLysSerSerProLysTrpIleSerArgThrValValLeuPheV 6230 : CGGTGTGTGGCCCTATCAAAAGAGCTCGCCAAAATGGATCAGTCGAACCGTAGTGCTCTTTG : 6168 43 : leIleIleLeuThrLeuThrThrGlnIleTyrGlnVal : 54 !!||||||! ! !! !..!||||||:!! :::::: alIleIleProCysTyrValThrGlnValGluLysIle 6167 : TAATAATACCTTGTTACGTTACACAGGTAgaaaaaata : 6130 vulgar: AmOr108 0 54 . LHQN01028732.1 6291 6129 - 113 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 6130 6291 113 - . gene_id 5 ; sequence AmOr108 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 6130 6291 . - . LHQN01028732.1 exonerate:protein2genome:local exon 6130 6291 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 6130 6291 113 - . alignment_id 5 ; Query AmOr108 ; Align 6292 1 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr99 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 151 -> 248 Target range: 5660 -> 5372 152 : LeuPheLeuValValProLeuValSerProIleLeuAspIleValHisProLeuAsnGlnTh : 172 ||||||:!! !:!!|||!!!|||||||||||||||||||||:!! |||||||||:!!|| LeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluTh 5660 : CTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGAC : 5600 173 : rArgSerArgGlnGlnLeuLeuArgValAsnTyrIleValPheAspIleAspAspTyrPheP : 193 ||||:!!||| ! :!!! !! !!.! !!|||.!!||| ||| ||| ! ||| !! rArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal---AspGluAspLysTyrArgT 5599 : GCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC---GACGAGGACAAATATCGTT : 5540 194 : heTyrValTyrLeuGlnLeuAlaTrpGlySerIleIleValValLeuThrIleIleAlaAla : 213 :!! :!! !!!.:!! ! ! ! !:!!!!::!!:!!! !..!.!! !|||..! yrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCys 5539 : ACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGC : 5480 214 : AspTrpPheTyrIleLeuIleIleHisPheAsnSerGlyLeuPheAlaValCysGlyValGl : 234 ||| !|||:!:! ! !:!:!!. ! !!!!||||||!!.|||:!!...||| ! AspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***Le 5479 : GATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATT : 5417 235 : nValLeuGluAlaThrMetAsnSerAsnLeuIleSerLysAsp : 248 !|||! !! ! ! !|||.!.!:!..!!!!:!!! !!:!:!! uValGlnGlyGlnLeuMetGluAsnGlyPheLeuTyrArgAsn 5416 : AGTTCAAGGACAATTAATGGAAAATGGTTTTCTTTATAGAAAT : 5373 vulgar: AmOr99 151 248 . LHQN01028732.1 5660 5372 - 115 M 34 102 G 1 0 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5373 5660 115 - . gene_id 1 ; sequence AmOr99 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5373 5660 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5373 5660 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5373 5660 115 - . alignment_id 1 ; Query AmOr99 ; Align 5661 152 102 ; Align 5559 187 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr102 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 142 -> 233 Target range: 5678 -> 5408 143 : LeuLeuIleAlaLeuValLeuPheLeuLeuIleProLeuIleSerProMetLeuAspValPh : 163 :!!! !:!!..! !!.!||||||:!!! !:!:|||!!!:!:||||||!!:||||||:!!.! IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLe 5678 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCT : 5618 164 : eLeuProLeuAsnGluThrArgProArgGlnGlnLeuLeuLysValAsnTyrLeuValPheA : 184 !:!!|||||||||||||||||| !!||| ! :!!! ! !!.! !!|||!!!||| : uMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal---A 5617 : TATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC---G : 5558 185 : snAspAspAspTyrPhePheTyrValTyrLeuGlnLeuAlaTrpGlySerIleIleValVal : 204 !!!!:||| ! ||| !!:!! :!! !!!.:!! ! ! ! !:!!!!::!!:!! spGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIle 5557 : ACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATC : 5498 205 : ValThrSerValAlaValAspSerLeuLeuIleLeuIleIleHisHisCysSerGlyLeuPh : 225 !..!! ! !||| !|||:!! !! !:!:! ! !:!:!!.|||..!!!!||||||!! SerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLe 5497 : TCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTT : 5435 226 : eThrValCysGlyTyrGlnValGln : 233 ..!!:!!...|||!! !|||||| uAlaIleAlaGly***LeuValGln 5434 : GGCCATTGCAGGGTAATTAGTTCAA : 5409 vulgar: AmOr102 142 233 . LHQN01028732.1 5678 5408 - 119 M 40 120 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5409 5678 119 - . gene_id 1 ; sequence AmOr102 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5409 5678 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5409 5678 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5409 5678 119 - . alignment_id 1 ; Query AmOr102 ; Align 5679 143 120 ; Align 5559 184 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 256 Query range: 127 -> 216 Target range: 5687 -> 5420 128 : LysValMetValTyrSerCysAlaPheMetPheLeuValIleProThrIleProProIleLe : 148 |||||| :!!! ! !|||||| !:!:|||:!! !:!:||| !:!: !!|||||||| LysValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLe 5687 : AAAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCT : 5627 149 : uAsnIleValAlaProLeuAsnValSerArgSerArgGluPheIleTyrProThrTyrTyrP : 169 |:!!|||:!! !|||||||||! !!!!|||:!!||| !|||:!!||||||.!!||||||| uAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrP 5626 : GGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATT : 5564 170 : heValAspGluGlnLysTyrTyrTyrProIleLeuThrHisMetIleAlaValIleLeuVal : 189 |||||||||||.!.|||||| !||| !|||:!! !|||||| ! !|||:!::!!:!! heValAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMet 5563 : TCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATG : 5504 190 : LeuSerSerValTyrLeuAlaCysAspThrAsnLeuValGlnIleValHisHisGlyCysAl : 210 |||! !||||||!:!! !|||||||||.!!|||! !||| ! !|||!!.|||!.!|||!. LeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGl 5503 : CTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGG : 5441 211 : aLeuLeuAlaIleSerGly : 216 !||||||||||||:!!||| yLeuLeuAlaIleAlaGly 5440 : ATTGTTGGCCATTGCAGGG : 5421 vulgar: AmOr109 127 216 . LHQN01028732.1 5687 5420 - 256 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5687 256 - . gene_id 1 ; sequence AmOr109 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5687 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5687 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5687 256 - . alignment_id 1 ; Query AmOr109 ; Align 5688 128 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 227 Query range: 287 -> 377 Target range: 4924 -> 4340 288 : LeuSerThrMetGluValGlyIleArgPhePheThrPheCysAlaTyrThrIleAlaGlnLe : 308 :!!||| ! ||| !! ! !..!!:: !!:!|||.!!!:! !! |||||||| IleSerGluHisGluHisAspAlaGluTrpThrLeuTyrCysThrPhePheThrAlaGlnLe 4924 : ATATCAGAACACGAACACGACGCAGAATGGACATTGTACTGCACGTTCTTCACGGCCCAGTT : 4864 309 : uIleHisLeuPhePheLeuThrIleMetGlyGlnPheLeuIleAsnAlaAsnGluGluThrP : 329 |:!!|||:!!.!.||||||..!:!!..!|||||||||:!!:!::!!||| !!!!:!!:..!! uLeuHisMetLeuPheLeuValValGlnGlyGlnPheValLeuAspAlaTyrAspAspValT 4863 : GTTACACATGCTGTTCTTAGTCGTTCAGGGGCAGTTCGTGTTGGACGCGTACGACGATGTTT : 4801 330 : heLysThr{Il} >>>> Target Intron 1 >>>> {e}TyrGluAlaAspTrpTyr : 338 :!!!.|||{||} 314 bp {|}||||||:!! |||||| yrAsnThr{Il}++ ++{e}TyrGluSerThrTrpTyr 4800 : ATAATACG{AT}gt.........................ag{A}TACGAATCGACATGGTAC : 4460 339 : AsnGlySerSerLysMetGlnSerLeuTyrValLeuValLeuArgLysCysLeuSerProPr : 359 |||..!|||!!!|||! !|||:!!||||||:!!|||!.!||||||!.. !!|||!:!||||| AsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeuArgSerSerLeuAsnProPr 4459 : AATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTACGGAGTAGCCTAAACCCTCC : 4397 360 : oLysLeuThrGlyGlyGlyPheValAlaLeuAsnLeuAspSerPheValGlnIle : 377 | !||||||!.!|||||||||:!!.!!||||||||| ! !!!||| !:!!:!! oLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLysThrPheSerGluVal 4396 : CTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAGACCTTCTCAGAGGTA : 4341 vulgar: AmOr109 287 377 . LHQN01028732.1 4924 4340 - 227 M 44 132 S 0 2 5 0 2 I 0 310 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 4341 4924 227 - . gene_id 2 ; sequence AmOr109 ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 4791 4924 . - . LHQN01028732.1 exonerate:protein2genome:local exon 4791 4924 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 4789 4790 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 4477 4790 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 4477 4478 . - . intron_id 0 ; splice_site "aG" LHQN01028732.1 exonerate:protein2genome:local cds 4341 4476 . - . LHQN01028732.1 exonerate:protein2genome:local exon 4341 4476 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 4341 4924 227 - . alignment_id 2 ; Query AmOr109 ; Align 4925 288 132 ; Align 4476 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 173 Query range: 301 -> 378 Target range: 1698 -> 1354 302 : AlaTyrThrIleAlaGlnLeuIleHisLeuPhePheLeuThrIleMetGlyGlnPheLeuIl : 322 .!!!:! !:!!!.!||| !.!!|||:!!|||||||||!.!:!!..!|||||||||:!!|| ThrPhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGlnGlyGlnPheValIl 1698 : ACGTTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGGACAATTTGTGAT : 1638 323 : eAsnAlaAsnGluGlu{Th} >>>> Target Intron 1 >>>> {r}PheLysThrI : 332 ||||||| !!!:|||{ } 113 bp {!} !! !! eAsnAlaPheAspGlu{Le}++ --{u}ValLeuCysA 1637 : AAACGCGTTCGACGAA{CT}gt.........................ct{T}GTCCTTTGCA : 1495 333 : leTyrGluAlaAspTrpTyrAsnGlySerSerLysMetGlnSerLeuTyrValLeuValLeu : 352 !||||||:!!.!.||||||||| !!!! !!!:!! |||:!!||||||||||||!.!||| rgTyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeu 1494 : GATACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTG : 1435 353 : ArgLysCysLeuSerProProLysLeuThrGlyGlyGlyPheValAlaLeuAsnLeuAspSe : 373 |||!..||||||!:!|||||| !||||||!.!||||||.!...!.!!||||||||| || ArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSe 1434 : AGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATC : 1372 374 : rPheValGlnIleLeu : 378 ||||!.!:!!:!::!! rPheAlaGluValIle 1371 : GTTCGCAGAGGTGATT : 1355 vulgar: AmOr109 301 378 . LHQN01028732.1 1698 1354 - 173 M 26 78 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1355 1698 173 - . gene_id 3 ; sequence AmOr109 ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 1619 1698 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1619 1698 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 1617 1618 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 1506 1618 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 1506 1507 . - . intron_id 0 ; splice_site "CT" LHQN01028732.1 exonerate:protein2genome:local cds 1355 1505 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1355 1505 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1355 1698 173 - . alignment_id 3 ; Query AmOr109 ; Align 1699 302 78 ; Align 1505 329 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 148 Query range: 332 -> 385 Target range: 7764 -> 7605 333 : TyrGluAlaAspTrpTyrAsnGlySerSerLysMetGlnSerLeuTyrValLeuValLeuAr : 353 |||...||| ||||||||||||!!! !!|||:!!|||:!!||||||||||||!.!||||| TyrSerAlaThrTrpTyrAsnGlyThrProLysValGlnAlaLeuTyrValLeuAlaLeuAr 7764 : TACAGCGCTACATGGTACAACGGTACACCGAAAGTGCAAGCTTTATACGTGCTAGCTTTGAG : 7704 354 : gLysCysLeuSerProProLysLeuThrGlyGlyGlyPheValAlaLeuAsnLeuAspSerP : 374 |!:! !|||!!!|||||| !:!!|||!.!||||||.!.:!!:!!|||||||||!!:!!!| gArgAsnLeuThrProProLeuIleThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrP 7703 : AAGGAACTTGACTCCACCGCTGATTACTGCCGGAGGACTGATCTCCTTGAATTTGGAGACTT : 7641 375 : heValGlnIleLeuLysAlaSerPheSerTyrTyr : 385 ||!.!:!!:!! ! !|||! ! !:!! ||| heAlaGluValGlyAlaAlaIleAsnAlaIleTyr 7640 : TCGCGGAGGTAGGTGCAGCAATTAACGCTATATAC : 7606 vulgar: AmOr109 332 385 . LHQN01028732.1 7764 7605 - 148 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 7606 7764 148 - . gene_id 4 ; sequence AmOr109 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 7606 7764 . - . LHQN01028732.1 exonerate:protein2genome:local exon 7606 7764 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 7606 7764 148 - . alignment_id 4 ; Query AmOr109 ; Align 7765 333 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr109 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 0 -> 58 Target range: 6291 -> 6117 1 : MetAspGluArgAlaIleGluAspGlnTyrLeuLysIleAsnLysPhePheGlyGlnLeuVa : 21 ||||||! !! !.!!:!!||| ! !::||||||!:!||||||||| .!!|||..!|||.. MetAspAlaIleThrLeuGluLysArgTyrLeuArgIleAsnLysLysLeuGlyMetLeuTh 6291 : ATGGATGCGATCACGTTAGAGAAACGTTACTTGAGAATCAACAAGAAGCTCGGCATGCTAAC : 6231 22 : lGlyValTrpProTyrGlnLysLysPhePheLysThrCysIleArgPheIleThrPheThrI : 42 !|||||||||||||||||||||!..! ||| ! !! !||| !:!!..!.!! !: rGlyValTrpProTyrGlnLysSerSerProLysTrpIleSerArgThrValValLeuPheV 6230 : CGGTGTGTGGCCCTATCAAAAGAGCTCGCCAAAATGGATCAGTCGAACCGTAGTGCTCTTTG : 6168 43 : leMetIlePheSerLeuAlaThrGlnIleSerArgValIleValPheTyr : 58 !!!!:||| !!!!! !!.!||||||:!!...:::::: :::..!!:! alIleIleProCysTyrValThrGlnValGluLysIleArgIleIlePhe 6167 : TAATAATACCTTGTTACGTTACACAGGTAgaaaaaataaggattatCTTT : 6118 vulgar: AmOr109 0 58 . LHQN01028732.1 6291 6117 - 115 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 6118 6291 115 - . gene_id 5 ; sequence AmOr109 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 6118 6291 . - . LHQN01028732.1 exonerate:protein2genome:local exon 6118 6291 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 6118 6291 115 - . alignment_id 5 ; Query AmOr109 ; Align 6292 1 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 252 Query range: 116 -> 216 Target range: 5723 -> 5420 117 : PheLysArgAlaMetPhePheCys<->SerPheTyrGluValSerIleTyrSerCysGlyPh : 136 !!.:!!|||:!!:!!! |||||| !!!||| ! :!!||| !|||! ! !|||!.! LeuGluArgSerLeuSerPheCysPheThrPheGluLysValHisIleSerLeuCysAlaAl 5723 : TTAGAACGTTCTCTGTCATTCTGTTTCACGTTTGAAAAAGTGCATATATCGTTATGCGCCGC : 5663 137 : eMetPheLeuSerMetProSerIleProLeuIleMetAsnValIleMetProLeuAsnGluS : 157 !:!:|||:!!!!!:!!|||! !:!: !!! !|||:!!:!!:!!:!!|||||||||||||||! aLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluT 5662 : TCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGA : 5600 158 : erArgSerArgGluLeuValTyrProSerTyrTyrPheValAspGluGlnLysTyrTyrTyr : 177 !!|||:!!||| !!!!|||||||||:!!||||||||||||||||||.!.|||||| !||| hrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyr 5599 : CGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTAC : 5540 178 : LeuIleThrGlyHisMetLeuAlaValCysLeuGlyHisValPheValTyrIleAlaCysAs : 198 ||||||..!|||||||||! ! !||| :!! !! !:!!! !|||!:! !|||||||| LeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAs 5539 : TTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGA : 5477 199 : pIleAsnLeuIleHisValValHisHisGlyCysAlaLeuLeuThrIleSerGly : 216 | !|||! !:!::!!!.!|||!!.|||!.!|||!.!||||||.!!|||:!!||| pAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5476 : TGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5421 vulgar: AmOr107 116 216 . LHQN01028732.1 5723 5420 - 252 M 8 24 G 0 3 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5723 252 - . gene_id 1 ; sequence AmOr107 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5723 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5723 . - . insertions 3 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5723 252 - . alignment_id 1 ; Query AmOr107 ; Align 5724 117 24 ; Align 5697 125 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 332 -> 377 Target range: 7764 -> 7629 333 : TyrAspAlaArgTrpTyrTyrGlySerSerLysThrGlnSerLeuTyrLeuLeuValLeuAr : 353 |||..!|||! !|||||| !!|||!!! !!|||..!|||:!!||||||:!!|||!.!||||| TyrSerAlaThrTrpTyrAsnGlyThrProLysValGlnAlaLeuTyrValLeuAlaLeuAr 7764 : TACAGCGCTACATGGTACAACGGTACACCGAAAGTGCAAGCTTTATACGTGCTAGCTTTGAG : 7704 354 : gLysCysLeuAsnProProLysLeuThrGlyGlyGlyLeuIleAlaLeuAsnLeuAspSerP : 374 |!:! !|||!.!|||||| !:!!|||!.!||||||||||||:!!|||||||||!!:!!!| gArgAsnLeuThrProProLeuIleThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrP 7703 : AAGGAACTTGACTCCACCGCTGATTACTGCCGGAGGACTGATCTCCTTGAATTTGGAGACTT : 7641 375 : heValLysVal : 377 ||!.!:!!||| heAlaGluVal 7640 : TCGCGGAGGTA : 7630 vulgar: AmOr107 332 377 . LHQN01028732.1 7764 7629 - 139 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 7630 7764 139 - . gene_id 2 ; sequence AmOr107 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 7630 7764 . - . LHQN01028732.1 exonerate:protein2genome:local exon 7630 7764 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 7630 7764 139 - . alignment_id 2 ; Query AmOr107 ; Align 7765 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 332 -> 377 Target range: 4475 -> 4340 333 : TyrAspAlaArgTrpTyrTyrGlySerSerLysThrGlnSerLeuTyrLeuLeuValLeuAr : 353 |||!!::!!! !|||||| !!..!|||!!!|||||||||:!!||||||:!!|||!.!||||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeuAr 4475 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTACG : 4415 354 : gLysCysLeuAsnProProLysLeuThrGlyGlyGlyLeuIleAlaLeuAsnLeuAspSerP : 374 |!.. !!|||||||||||| !||||||!.!||||||!!!|||.!!||||||||| ! !!!| gSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLysThrP 4414 : GAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAGACCT : 4352 375 : heValLysVal : 377 || !:!!||| heSerGluVal 4351 : TCTCAGAGGTA : 4341 vulgar: AmOr107 332 377 . LHQN01028732.1 4475 4340 - 139 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 4341 4475 139 - . gene_id 3 ; sequence AmOr107 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 4341 4475 . - . LHQN01028732.1 exonerate:protein2genome:local exon 4341 4475 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 4341 4475 139 - . alignment_id 3 ; Query AmOr107 ; Align 4476 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 136 -> 183 Target range: 1860 -> 1719 137 : MetPheLeuSerMetProSerIleProLeuIleMetAsnValIleMetProLeuAsnGluSe : 157 !!:||||||!!!:!!|||! ! !|||:!!|||:!!:!!:!! ! !|||||||||:!!!! IlePheLeuCysValProPheAlaProIleIleLeuAspIleCysAlaProLeuAsnLysTh 1860 : ATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTGCGCGCCACTGAACAAAAC : 1800 158 : rArgSerArgGluLeuValTyrProSerTyrTyrPheValAspGluGlnLysTyrTyrTyrL : 178 !|||!.!|||! !!!!|||||||||:!!||||||!:::!!||| :!!:!!|||||| : rArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMetI 1799 : GAGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATGA : 1737 179 : euIleThrGlyHisMet : 183 !!!!:! ! !|||!!: leMetIleIleHisIle 1736 : TAATGATAATACACATA : 1720 vulgar: AmOr107 136 183 . LHQN01028732.1 1860 1719 - 122 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1720 1860 122 - . gene_id 4 ; sequence AmOr107 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 1720 1860 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1720 1860 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1720 1860 122 - . alignment_id 4 ; Query AmOr107 ; Align 1861 137 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr107 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 0 -> 58 Target range: 6291 -> 6117 1 : MetAspGlnGlnAlaMetGluGluLeuTyrLeuLysAspAsnLysPhePheGlyGlnLeuVa : 21 |||||| ! .!!:!:|||:!!! !||||||!:! !|||||| .!!|||..!|||.. MetAspAlaIleThrLeuGluLysArgTyrLeuArgIleAsnLysLysLeuGlyMetLeuTh 6291 : ATGGATGCGATCACGTTAGAGAAACGTTACTTGAGAATCAACAAGAAGCTCGGCATGCTAAC : 6231 22 : lGlyValTrpProAspGlnGlyLysPheMetLysPheLeuMetArgPheIleIleLeuIleV : 42 !|||||||||||| !!||| !!..! |||!:::!!! ||| !:!!:!:|||.!!| rGlyValTrpProTyrGlnLysSerSerProLysTrpIleSerArgThrValValLeuPheV 6230 : CGGTGTGTGGCCCTATCAAAAGAGCTCGCCAAAATGGATCAGTCGAACCGTAGTGCTCTTTG : 6168 43 : alMetIleIleAlaPheIleAlaGlnIleSerArgValAlaValPheTyr : 58 ||!!:||| !..!!:!:!!.!!|||:!!...:::::: :::..!!:! alIleIleProCysTyrValThrGlnValGluLysIleArgIleIlePhe 6167 : TAATAATACCTTGTTACGTTACACAGGTAgaaaaaataaggattatCTTT : 6118 vulgar: AmOr107 0 58 . LHQN01028732.1 6291 6117 - 115 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 6118 6291 115 - . gene_id 5 ; sequence AmOr107 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 6118 6291 . - . LHQN01028732.1 exonerate:protein2genome:local exon 6118 6291 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 6118 6291 115 - . alignment_id 5 ; Query AmOr107 ; Align 6292 1 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr104 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 147 -> 233 Target range: 5663 -> 5408 148 : ValLeuPheLeuLeuValProLeuIlePheProPheLeuAspIleValHisProLeuAsnGl : 168 !.!||||||:!!! !:!!|||!!!:!:! |||.!!|||||||||:!! ||||||||||| AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGl 5663 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGA : 5603 169 : uThrArgProArgGlnGlnLeuPheArgValAsnTyrLeuIlePheAsnHisAsnAspTyrP : 189 ||||||| !!||| ! :!!!:!! !!.! !!|||!!!:!! :!!.!.:!! ! ||| uThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal---AspGluAspLysTyrA 5602 : GACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC---GACGAGGACAAATATC : 5543 190 : hePheTyrIleTyrLeuGlnLeuAlaTrpGlySerIleIleValValMetIleIleValThr : 209 !!:!! ||| !!!.:!! ! ! ! !:!!!!::!!:!! :!!.!! !.!! rgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 5542 : GTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 5483 210 : ValAspSerLeuTyrMetIleIleIleHisHisSerSerGlyMetPheAlaMetCysGlyTy : 230 !|||:!! !|||:!! ! !:!:!!.|||:!!!!!|||:!!!!.|||!!:...|||!! CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly** 5482 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTA : 5420 231 : rLysValGln : 233 !|||||| *LeuValGln 5419 : ATTAGTTCAA : 5409 vulgar: AmOr104 147 233 . LHQN01028732.1 5663 5408 - 113 M 35 105 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5409 5663 113 - . gene_id 1 ; sequence AmOr104 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5409 5663 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5409 5663 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5409 5663 113 - . alignment_id 1 ; Query AmOr104 ; Align 5664 148 105 ; Align 5559 184 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr93PSE Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 171 -> 206 Target range: 315 -> 420 172 : SerLeuSerLeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIleMetA : 193 :!!||||||:!!|||!!.:!!..!|||!!!|||.!!||||||||||||...... |||||| AlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePhePheIleMetC 316 : GCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttttcattatgt : 379 194 : snLeuHisValAlaGlyGlnPheGlnValLeuGlnTyrArg : 206 !|||||||||||||||||||||!:::!!|||||||||||| ysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 380 : gTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: AmOr93PSE 171 206 . LHQN01049471.1 315 420 + 123 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 316 420 123 + . gene_id 1 ; sequence AmOr93PSE ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 316 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 316 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 316 420 123 + . alignment_id 1 ; Query AmOr93PSE ; Align 316 172 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr113 Target: LHQN01049761.1 Habropoda laboriosa contig49761, whole genome shotgun sequence Model: protein2genome:local Raw score: 242 Query range: 236 -> 342 Target range: 40 -> 552 237 : LysGluThrCysLysLysIleArgSerSerIleGlnGlyHisGluGlyAlaIle{Ar} >>>> : 255 ||||||.!!! !|||!!. !!! !|||||||||||||||:!! !!||||||{!.} LysGluAlaTyrLysAsnAlaCysPheSerIleGlnGlyHisGlnArgAlaIle{As}++ 41 : AAAGAGGCGTACAAGAACGCGTGCTTCTCCATTCAGGGACATCAACGTGCTATA{AA}gt.... : 99 256 : Target Intron 1 >>>> {g}TyrLeuLysLysIleGluAspThrHisValAsnLeuLe : 268 113 bp {!}!:!:!!|||:!!|||||| ! !|||! !!..! !|| ++{n}PheValLysGluIleGluArgGlyHisAspThrTyrLe 100 : .....................ag{C}TTTGTAAAGGAAATTGAACGCGGCCATGACACGTACCT : 247 269 : uPheIleSerLeuGlyLeuIleIleMetCysPheSerIleThrLeuLeuLys >>>> Targe : 286 ||||! !!!!|||||||||:!:|||:!:||||||||||||||||||:!!||| uPheThrCysLeuGlyLeuValIleLeuCysPheSerIleThrLeuIleLys++ 248 : TTTCACCTGCTTAGGCTTGGTGATTCTATGCTTCAGTATTACTCTGATCAAGgt.......... : 303 287 : t Intron 2 >>>> ValValThrMetAspTyrCysLeuAspPheTyrLysTyrSerSerPh : 301 81 bp :!! !||| !|||!:! !:!!|||||||||!:!|||!!!||||| ++LeuSerThrSerAspPheAspIleAspPheTyrArgTyrCysSerPh 304 : ...............agCTGAGTACGTCGGATTTCGACATAGACTTCTACAGATACTGCAGTTT : 427 302 : eLeuIleValGlnLeuMetHisLeuCysTyrValMetIleGlnGlyGlnPheValIleAspSer : 322 | !:!: !|||||||||||||||! ! !:!!|||:!!|||||||||||||||:!:|||||| eThrLeuCysGlnLeuMetHisLeuPheValIleMetLeuGlnGlyGlnPheValLeuAspSer 428 : TACGTTGTGTCAACTGATGCACCTGTTCGTCATCATGCTTCAGGGACAGTTCGTGCTGGATTCG : 490 323 : CysAsnGluIleTyrTyrSerIleTyrGluAlaSerTrpTyrAsnIleAsnProLysIle : 342 |||:!!..!|||:!! ! :!!!!:! ! !! !.!! !!||| !||| !!:!||| CysAspArgIleHisGluAlaMet***ValGluGlyIleAsnAsnArgAsnLysArgIle 491 : TGCGACAGAATTCACGAGGCGATGTGAGTAGAGGGAATAAATAATCGCAACAAAAGGATA : 552 vulgar: AmOr113 236 342 . LHQN01049761.1 40 552 + 242 M 18 54 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 30 90 5 0 2 I 0 77 3 0 2 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049761.1 exonerate:protein2genome:local gene 41 552 242 + . gene_id 1 ; sequence AmOr113 ; gene_orientation + LHQN01049761.1 exonerate:protein2genome:local cds 41 96 . + . LHQN01049761.1 exonerate:protein2genome:local exon 41 96 . + . insertions 0 ; deletions 0 LHQN01049761.1 exonerate:protein2genome:local splice5 97 98 . + . intron_id 1 ; splice_site "GT" LHQN01049761.1 exonerate:protein2genome:local intron 97 209 . + . intron_id 1 LHQN01049761.1 exonerate:protein2genome:local splice3 208 209 . + . intron_id 0 ; splice_site "AG" LHQN01049761.1 exonerate:protein2genome:local cds 210 300 . + . LHQN01049761.1 exonerate:protein2genome:local exon 210 300 . + . insertions 0 ; deletions 0 LHQN01049761.1 exonerate:protein2genome:local splice5 301 302 . + . intron_id 2 ; splice_site "GT" LHQN01049761.1 exonerate:protein2genome:local intron 301 381 . + . intron_id 2 LHQN01049761.1 exonerate:protein2genome:local splice3 380 381 . + . intron_id 1 ; splice_site "AG" LHQN01049761.1 exonerate:protein2genome:local cds 382 552 . + . LHQN01049761.1 exonerate:protein2genome:local exon 382 552 . + . insertions 0 ; deletions 0 LHQN01049761.1 exonerate:protein2genome:local similarity 41 552 242 + . alignment_id 1 ; Query AmOr113 ; Align 41 237 54 ; Align 211 256 90 ; Align 382 286 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr118 Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 303 -> 371 Target range: 824 -> 1197 304 : SerGluAsnIleAsnLysAlaValTyrAsnPheLeuTrpTyrAsnLeuLysProArgAspVa : 324 |||:!! |||..!!!..!!!.!|||.!.||||||||||||:!!|||::: !!! !!!: SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSe 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAG : 885 325 : lArgIleMetLeuMetIleIleLeuArgSerGlnLysGlnLeuThrLeuThrAlaGlyLysP : 345 !!:!:!!:!::!! :!!|||||||||||||||||| !!!|||!..||| ||||||| rGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysP 886 : CCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaat : 948 346 : heIleCysLeuSerLeuGluAlaPheAlaAsn >>>> Target Intron 1 >>>> M : 356 || ||||||||||||::!|||.!! ! 169 bp ! heSerSerLeuSerLeuGluSerPheThrAla++ ++I 949 : tttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.........................agA : 1150 357 : etLeuLysAlaSerAlaSerTyrValSerValLeuTyrAlaArgTyr : 371 !::!!|||!.!||||||||||||:!!||||||||| !||| !||| leMetLysValSerAlaSerTyrIleSerValLeuLeuAlaValTyr 1151 : TCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTGTAT : 1197 vulgar: AmOr118 303 371 . LHQN01050112.1 824 1197 + 158 M 52 156 5 0 2 I 0 165 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 1197 158 + . gene_id 1 ; sequence AmOr118 ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 825 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1197 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1197 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 1197 158 + . alignment_id 1 ; Query AmOr118 ; Align 825 304 156 ; Align 1150 356 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr140TRA Target: KQ414573.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold16, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 142 -> 228 Target range: 648918 -> 648660 143 : TyrValTyrThrThrLeuPheValTyrLeuLeuLeuProThrIleProLeuIleIleA : 162 !:!:!!!:! ! !:!! !!:! ! !:!!||| !:!:! ! ! ! !| PheLeuPheGlyLeuIleThrProPheAlaAlaMetProLeuLeuLeuAsnAlaAlaA 648918 : TTTTTATTCGGATTAATAACACCGTTTGCGGCAATGCCATTACTGCTGAATGCAGCTG : 648861 163 : spPheIleThrSerSerAsnHisSerGlnLysArgAsnPheLeuPheGluLeuAspTy : 181 || !:!! !! !|||||| |||... ! ||| !!.:!!|||..!:!!!!::! spThrLeuGlyPheSerAsnValSerSerAspArgProLeuValPheArgValGluHi 648860 : ACACTTTAGGATTCAGCAATGTGTCCAGCGATCGACCGTTGGTATTTCGAGTTGAACA : 648804 182 : rGlyMetAspLysGlnGlnTyrPheTyrTyrIleSerIleHisSerTyrIleGlyThr : 200 ! !:!!||| !.!.:!!|||!:!||| !:!!! !:!:|||||||||.!!|||||| sPheValAspValAspLysTyrTyrTyrThrLeuLeuValHisSerTyrPheGlyThr 648803 : TTTCGTGGATGTGGACAAATACTACTATACCCTTTTAGTGCATTCATACTTTGGTACT : 648747 201 : AlaIleValAlaAsnLeuIleAlaSerCysAspThrMetTyrMetLeuTyrAlaGlnH : 220 ! ! !!.!! :!!:!!!.!||| !:!!:!!!!: :!!|||!.!! !| IleAlaPheThrAlaIleValValSerIleAsnSerIleIleAlaValTyrValLeuH 648746 : ATAGCATTTACTGCGATTGTTGTCTCTATCAACTCGATAATAGCTGTGTACGTCCTAC : 648687 221 : isAlaTyrAlaLeuPheAlaIleVal : 228 ||! !! !!.!|||! !! !|||:!! isGluCysGlyLeuCysGluIleLeu 648686 : ACGAATGCGGACTTTGTGAAATCTTA : 648661 vulgar: AmOr140TRA 142 228 . KQ414573.1 648918 648660 - 104 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414573.1 exonerate:protein2genome:local gene 648661 648918 104 - . gene_id 1 ; sequence AmOr140TRA ; gene_orientation . KQ414573.1 exonerate:protein2genome:local cds 648661 648918 . - . KQ414573.1 exonerate:protein2genome:local exon 648661 648918 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local similarity 648661 648918 104 - . alignment_id 1 ; Query AmOr140TRA ; Align 648919 143 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr142 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1327 Query range: 0 -> 371 Target range: 1058517 -> 1054220 1 : MetLysAsnArgLeuThrProGluLysAlaIleLeuPheThrLysLeuSerValAl : 19 |||!:!!!.!!!:!!|||||||||:!!||||||! !|||||||||||||||||||| MetArgLysSerIleThrProGluGlnAlaIleSerPheThrLysLeuSerValAl 1058517 : ATGAGGAAAAGTATAACGCCGGAACAAGCGATCTCGTTCACGAAACTGAGCGTCGC : 1058463 20 : aLeuThrCysSerTrpProProSerProLeuAlaThrLysAlaGlnHisLeuPheP : 38 |:!!|||||||||||||||||||||||||||||||||!:!.!!||| !|||.!!| aValThrCysSerTrpProProSerProLeuAlaThrArgThrGlnValLeuLeuP 1058462 : TGTAACTTGTTCGTGGCCACCGTCACCTCTGGCGACCAGAACTCAAGTTTTGCTCT : 1058406 39 : heAsnAlaLeuTrpCysIleAlaPheLeuThrSerValMetLeuPheLeuProLeu : 56 |||||.!!|||||| !!! !||||||:!!!:!!!!:!! !|||.!!||||||||| heAsnThrLeuTrpSerThrAlaPheValSerThrIleAlaLeuLeuLeuProLeu 1058405 : TTAATACGTTGTGGAGCACAGCATTCGTTAGCACCATCGCGCTGCTTTTGCCGCTA : 1058352 57 : LeuAlaAlaIleTyrValTyrArgLysHisProValIleLeuGlyLysThrValSe : 75 |||::!!.!||||||! !||||||||| !!|||:!!|||||||||||||||||||| LeuSerGlyIleTyrGluTyrArgLysAspProIleIleLeuGlyLysThrValSe 1058351 : TTGAGCGGAATTTACGAGTACCGTAAAGACCCCATCATTCTTGGGAAAACAGTCAG : 1058295 76 : rLeuThrAlaAlaValAlaGlnValThrIleLysMetIleIleCysArgLeuGlnG : 94 ||||.!!:!!|||||||||||||||.!!||||||||||||!!:||||||!!!|||| rLeuAlaSerAlaValAlaGlnValAlaIleLysMetIleMetCysArgPheGlnG 1058294 : CCTCGCCTCGGCTGTCGCCCAGGTGGCAATCAAAATGATAATGTGCCGTTTCCAGC : 1058238 95 : lnLysArgPheGln >>>> Target Intron 1 >>>> MetLeuTyrSerG : 103 |||||!:!|||||| 83 bp :!:||||||! !! lnLysGlnPheGln++ ++ValLeuTyrPheA 1058237 : AGAAGCAATTCCAGgt.........................agGTATTGTACTTCG : 1058128 104 : luMetGluAsnPheCysLysGlnAlaThrAsnGluGluLysIleIleLeuGlnArg : 121 !:|||||||||||||||!:! ! ||||||::::::||||||::::::||||||||| spMetGluAsnPheCysArgTyrAlaThrSerLysGluLysValValLeuGlnArg 1058127 : ACATGGAGAATTTCTGCAGATACGCCACCtcgaaggaaaaagttgtcCTGCAACGA : 1058074 122 : TyrValAspArgTyrLysTyrPheHisSerPheTyrIleLeuTrpSerPheLeuTh : 140 |||||||||||||||||||||||||||.!!.!!||||||||||||!!!|||||||| TyrValAspArgTyrLysTyrPheHisGlyIleTyrIleLeuTrpCysPheLeuTh 1058073 : TACGTGGACAGATACAAATACTTTCATGGGATTTATATATTATGGTGCTTCCTCAC : 1058017 141 : rThrIlePheValIleCysGlyProLeuTyrThrValGlnThrPheProThrHisA : 159 |||||||||||||||| !!||||||||||||:!! !||||||||||||||||||| rThrIlePheValIleSerGlyProLeuTyrSerProGlnThrPheProThrHisA 1058016 : GACCATCTTCGTCATAAGTGGTCCATTGTACTCACCACAGACGTTCCCCACTCATG : 1057960 160 : laIleTyrProPheSerValArgArgHisLeuTyrLysGlyLeuIlePhePheHis : 177 ||||||||||||||..!|||..!!.! |||!:!||| :::|||:::|||||| laIleTyrProPheGlnValGluHisThrLeuPheLysIleValIleTyrPheHis 1057959 : CGATATATCCTTTCCAAGTGGAACATACACTGTTCAagattgttatttatttccat : 1057906 178 : GlnSerLeuValGlyPheGlnValSerSerGlyMetAlaIleAspThrGlnIleAl : 196 |||||||||||||||||||||!.!|||:!!|||||||||||||||||||||||||| GlnSerLeuValGlyPheGlnAlaSerAlaGlyMetAlaIleAspThrGlnIleAl 1057905 : CAGTCGTTAGTTGGTTTTCAGGCGTCCGCTGGTATGGCCATCGACACTCAAATTGC : 1057849 197 : aLeuLeuLeuArgTyrAlaThrAlaArgPheGluIleLeuGlyIleGlnPheAsnA : 215 |||||||||||||||||||.!!||||||||||||:!!||||||! !:!!.!....| aLeuLeuLeuArgTyrAlaAlaAlaArgPheGluLeuLeuGlyAsnGluMetArgA 1057848 : TCTTCTTCTGCGATACGCGGCTGCCAGGTTCGAGCTATTGGGAAACGAGATGCGAA : 1057792 216 : snAlaLysSerAspGlyGluPheAspAlaCysIleLysLysHisAspGluLeuLeu : 233 |||||!!.!!! !! !!||||||:!!|||||||||:!!||||||..!||||||||| snAlaAsnThrHisCysGluPheAsnAlaCysIleGluLysHisSerGluLeuLeu 1057791 : ATGCAAATACTCACTGTGAATTCAATGCCTGCATAGAGAAGCACAGTGAACTTCTC : 1057738 234 : {Ar} >>>> Target Intron 2 >>>> {g}TyrSerArgGluIleArgGl : 241 {||} 1480 bp {|}|||!!!!:! !|||||||| {Ar}++ ++{g}TyrThrLysThrIleArgGl 1057737 : {AG}gt.........................ag{G}TATACGAAAACAATTCGACA : 1056234 242 : nSerIleLysPheLeuIleLeuAlaThrAsnGlyThrThrValIleAlaValIleP : 260 ||||||||||||||||||||||.!!|||! !!.!||||||..!:!:|||||||||| nSerIleLysPheLeuIleLeuThrThrIleAlaThrThrThrValAlaValIleP 1056233 : ATCTATCAAGTTCCTAATTTTGACCACTATTGCGACTACTACCGTGGCCGTAATTT : 1056177 261 : heGlySerLeuAsnLeuIleAla >>>> Target Intron 3 >>>> AsnG : 269 ||||||||||||||||||||||| 76 bp |||| heGlySerLeuAsnLeuIleAla++ ++AsnG 1056176 : TTGGTAGCTTGAATTTAATCGCTgt.........................agAATC : 1056074 270 : lnProLeuIleLeuLysAlaLeuTyrAlaIleValValPheSerAlaSerValGlu : 287 ||||||||:!!||||||||||||||||||:!!|||||||||||||||||||||||| lnProLeuLeuLeuLysAlaLeuTyrAlaValValValPheSerAlaSerValGlu 1056073 : AACCATTGCTTTTGAAAGCTTTATACGCGGTCGTAGTATTCAGCGCCAGCGTGGAG : 1056020 288 : LeuPheMetTyrAlaTrpProAlaAspSerLeuMetHisMet >>>> Target : 302 |||||||||||||||||||||||||||!:!||||||!.!||| 63 LeuPheMetTyrAlaTrpProAlaAspAsnLeuMetArgMet++ 1056019 : CTCTTCATGTACGCTTGGCCTGCGGATAATTTGATGCGTATGgt............ : 1055973 303 : Intron 4 >>>> ThrMetLysMetAlaThrLysValTyrAsnMetAspTrpTy : 315 bp !:!! !|||:!:|||.!! ! :!!||||||! ||||||!: ++SerThrLysLeuAlaAlaAspIleTyrAsnThrAspTrpPh 1055972 : .............agAGTACGAAGCTTGCGGCAGATATTTACAACACAGATTGGTT : 1055873 316 : rGlyLysAspIleArgThrGlnArgLysIleLeuPheIleIleLeuArgSerGlnL : 334 !! !|||||||||||| !|||!:!|||:!!! !!:!||||||! !|||||||||! eGluLysAspIleArgLeuGlnLysLysValTyrTyrIleIleGlnArgSerGlnA 1055872 : CGAAAAGGATATTAGATTGCAAAAAAAGGTATACTATATTATACAAAGGTCTCAGA : 1055816 335 : ysTyrGluSerPheGlyIleAsnGlyIleValProAlaLeuSerLeuSerTyrTyr : 352 :! !|||:!!.!! !!|||||||||||||||||| !||||||||| !!|||||| rgLeuGluAlaIleArgIleAsnGlyIleValProLysLeuSerLeuProTyrTyr 1055815 : GGCTCGAAGCTATTCGAATTAATGGCATAGTTCCAAAACTATCCCTGCCATACTAT : 1055762 353 : GlyLys >>>> Target Intron 5 >>>> TyrLeuTyrThrSerLeuSer : 361 !.!! ! 1482 bp |||||||||! !||||||||| AlaMet++ ++TyrLeuTyrLysSerLeuSer 1055761 : GCAATGgt.........................agTATCTATACAAGTCTTTATCT : 1054253 362 : TyrPheAsnAlaLeuArgIleMetValGlu : 371 ||||||!.!||||||||||||||||||||| TyrPheThrAlaLeuArgIleMetValGlu 1054252 : TACTTCACTGCGTTGCGTATCATGGTCGAA : 1054221 vulgar: AmOr142 0 371 . KQ414618.1 1058517 1054220 - 1327 M 98 294 5 0 2 I 0 79 3 0 2 M 135 405 S 0 2 5 0 2 I 0 1476 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 34 102 5 0 2 I 0 59 3 0 2 M 53 159 5 0 2 I 0 1478 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1054221 1058517 1327 - . gene_id 1 ; sequence AmOr142 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1058224 1058517 . - . KQ414618.1 exonerate:protein2genome:local exon 1058224 1058517 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1058222 1058223 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1058141 1058223 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1058141 1058142 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1057734 1058140 . - . KQ414618.1 exonerate:protein2genome:local exon 1057734 1058140 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1057732 1057733 . - . intron_id 2 ; splice_site "gt" KQ414618.1 exonerate:protein2genome:local intron 1056254 1057733 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1056254 1056255 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1056154 1056253 . - . KQ414618.1 exonerate:protein2genome:local exon 1056154 1056253 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1056152 1056153 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1056078 1056153 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1056078 1056079 . - . intron_id 2 ; splice_site "ag" KQ414618.1 exonerate:protein2genome:local cds 1055976 1056077 . - . KQ414618.1 exonerate:protein2genome:local exon 1055976 1056077 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1055974 1055975 . - . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1055913 1055975 . - . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 1055913 1055914 . - . intron_id 3 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1055754 1055912 . - . KQ414618.1 exonerate:protein2genome:local exon 1055754 1055912 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1055752 1055753 . - . intron_id 5 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1054272 1055753 . - . intron_id 5 KQ414618.1 exonerate:protein2genome:local splice3 1054272 1054273 . - . intron_id 4 ; splice_site "aG" KQ414618.1 exonerate:protein2genome:local cds 1054221 1054271 . - . KQ414618.1 exonerate:protein2genome:local exon 1054221 1054271 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1054221 1058517 1327 - . alignment_id 1 ; Query AmOr142 ; Align 1058518 1 294 ; Align 1058141 99 405 ; Align 1056253 235 99 ; Align 1056078 268 102 ; Align 1055913 302 159 ; Align 1054272 355 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr142 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 378 Query range: 5 -> 234 Target range: 1030002 -> 1028765 6 : ThrProGluLysAlaIleLeuPheThrLysLeuSerValAlaLeuThrCysSerTr : 24 !:!||||||!:!||||||! !.!!..!:!!:!!! !..!|||!!!||||||!!!|| SerProGluArgAlaIleSerLeuValGlnValIleThrAlaPheThrCysCysTr 1030002 : AGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGCTTTTACCTGCTGTTG : 1029948 25 : pProProSerProLeuAlaThrLysAlaGlnHisLeuPhePheAsnAlaLeuTrpC : 43 ||||! ! !! !! !|||||||||:!!! ! ||| |||!!. !||| ! ! pProLeuProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuArgS 1029947 : GCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGAGAT : 1029891 44 : ysIleAlaPheLeuThrSerValMetLeuPheLeuProLeuLeuAlaAlaIleTyr : 61 !.!! !.!!|||!.!:!!:!!:!!|||||||||||||||||| !|||:!::!! erPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHis 1029890 : CTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCAC : 1029837 62 : ValTyrArgLysHisProValIleLeuGlyLysThrValSerLeuThrAlaAlaVa : 80 |||:!!|||!!. !! !!! !! !:!!!.!|||.!!!.!!!!|||||| !|||:: ValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLe 1029836 : GTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCct : 1029780 81 : lAlaGlnValThrIleLysMetIleIleCysArgLeuGlnGlnLysArgPheGln : 99 :...|||::: ...::: .!!:!!|||! ! !||| ! ! !.!|||||| uValGlnIlePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGln+ 1029779 : cgtgcaaatatttttccagacTTTCGTTTGCATCGGCCAATACGATCATTTTCAGg : 1029723 100 : >>>> Target Intron 1 >>>> MetLeuTyrSerGluMetGluAsnPheC : 108 550 bp ! ||| !..!||||||:!!! !! !| + ++LysLeuIleGluGluMetLysIleCysC 1029722 : t.........................agAAACTAATCGAAGAAATGAAGATTTGCT : 1029146 109 : ysLysGlnAlaThrAsnGluGluLysIleIleLeuGlnArgTyrValAspArgTyr : 126 ||:!! !|||! ! ! |||!:! !:!!!!!|||||||||||||||!:!||| ysGluThrAlaLysProTyrGluArgAspValPheGlnArgTyrValAspLysTyr 1029145 : GTGAAACAGCGAAACCATACGAAAGAGACGTCTTTCAACGATACGTCGATAAATAC : 1029092 127 : LysTyrPheHisSerPheTyrIleLeuTrpSerPheLeuThrThrIlePheValIl : 145 ...! |||:!! ! ! ! ! !|||! !!:!||||||.!!:!!.!!:!!:! SerLeuPheTyrValThrCysSerSerTrpPheTyrLeuThrAlaValIleMetVa 1029091 : TCTTTATTTTACGTAACATGTTCGTCGTGGTTTTACTTAACAGCAGTTATTATGGT : 1029035 146 : eCysGlyProLeuTyrThrValGlnThrPheProThrHisAlaIleTyrProPheS : 164 ! ||| !! ! !! ! !.!. !!|||||||||:!!|||:!!||||||||| lLeuGlySerArgIleIleSerAspProPheProThrAsnAlaValTyrProPheP 1029034 : TCTGGGAAGTCGGATTATATCTGATCCTTTTCCAACCAACGCCGTATATCCATTCC : 1028978 165 : erValArgArgHisLeuTyrLysGlyLeuIlePhePheHisGlnSerLeuValGly : 182 !!|||!.! !.!.! !! !:!.!!:!!||||||.!.|||||||||!!!|||||| roValAsnPheGluProLeuArgSerIleIlePheMetHisGlnSerPheValGly 1028977 : CTGTTAACTTTGAACCCTTGAGAAGTATCATTTTTATGCACCAATCGTTCGTTGGC : 1028924 183 : PheGlnValSerSerGlyMetAlaIleAspThrGlnIleAlaLeuLeuLeuArgTy : 201 .!.||| !:!!:!! !! ::!!!::!!..!! !! !||||||||||||! !!: IleGlnCysAlaAlaHisThrSerMetAsnValLeuThrAlaLeuLeuLeuLeuPh 1028923 : ATACAGTGTGCTGCACACACTAGTATGAATGTGCTAACTGCATTGTTATTACTATT : 1028867 202 : rAlaThrAlaArgPheGluIleLeuGlyIleGlnPheAsnAsnAlaLysSerAspG : 220 !|||.!!|||||||||||||||||| !!!::!!.!.!..|||!.!!....! !! eAlaAlaAlaArgPheGluIleLeuMetMetGluLeuArgAsnValSerAspIleG 1028866 : TGCTGCAGCTCGTTTCGAGATACTGATGATGGAGCTGAGGAATGTCAGTGACATTG : 1028810 221 : lyGluPheAspAlaCysIleLysLysHisAspGluLeuLeuArg : 234 ! !.!. ! !|||!!:||||||:!!... :!!! !||| luThrLeuIleLysCysMetLysLysTyrSerIleValArgArg 1028809 : AAACACTGATTAAATGTATGAAAAAGTATTCGATCGTACGGAGG : 1028766 vulgar: AmOr142 5 234 . KQ414618.1 1030002 1028765 - 378 M 93 279 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028766 1030002 378 - . gene_id 2 ; sequence AmOr142 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1029724 1030002 . - . KQ414618.1 exonerate:protein2genome:local exon 1029724 1030002 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1029722 1029723 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1029174 1029723 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1029174 1029175 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028766 1029173 . - . KQ414618.1 exonerate:protein2genome:local exon 1028766 1029173 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028766 1030002 378 - . alignment_id 2 ; Query AmOr142 ; Align 1030003 6 279 ; Align 1029174 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr142 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 365 Query range: 5 -> 234 Target range: 1039169 -> 1037932 6 : ThrProGluLysAlaIleLeuPheThrLysLeuSerValAlaLeuThrCysSerTr : 24 !:!||||||!:!||||||! !.!!..!:!!:!!! !..!|||!!!||||||!!!|| SerProGluArgAlaIleSerLeuValGlnValIleThrAlaPheThrCysCysTr 1039169 : AGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGCTTTTACCTGCTGTTG : 1039115 25 : pProProSerProLeuAlaThrLysAlaGlnHisLeuPhePheAsnAlaLeuTrpC : 43 ||||! ! !! !! !|||||||||:!!! ! ||| |||!!. !||| ! ! pProLeuProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuArgS 1039114 : GCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGAGAT : 1039058 44 : ysIleAlaPheLeuThrSerValMetLeuPheLeuProLeuLeuAlaAlaIleTyr : 61 !.!! !.!!|||!.!:!!:!!:!!|||||||||||||||||| !|||:!::!! erPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHis 1039057 : CTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCAC : 1039004 62 : ValTyrArgLysHisProValIleLeuGlyLysThrValSerLeuThrAlaAlaVa : 80 |||:!!|||!!. !! !!! !! !:!!!.!|||.!!!.!!!!|||||| !|||:: ValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLe 1039003 : GTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCTct : 1038947 81 : lAlaGlnValThrIleLysMetIleIleCysArgLeuGlnGlnLysArgPheGln : 99 :...|||::: ...::: ...:::|||! ! !||| ! ! !.!|||||| uValGlnIlePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGln+ 1038946 : cgtgcaaatatttttccaaactttcgttTGCATCGGTCAATACGATCATTTTCAGg : 1038890 100 : >>>> Target Intron 1 >>>> MetLeuTyrSerGluMetGluAsnPheC : 108 550 bp ! ||| !..!||||||:!!! !! !| + ++LysLeuIleGluGluMetLysIleCysC 1038889 : t.........................agAAACTAATCGAAGAAATGAAGATTTGTT : 1038313 109 : ysLysGlnAlaThrAsnGluGluLysIleIleLeuGlnArgTyrValAspArgTyr : 126 ||:!! !|||! ! ! |||!:! !:!!!!!||||||||||||:!!!:!:!: ysGluThrAlaLysProTyrGluArgAspValPheGlnArgTyrValAsnLysHis 1038312 : GTGAAACAGCAAAACCATACGAAAGAGACGTCTTCCAACGATACGTCAATAAGCAc : 1038259 127 : LysTyrPheHisSerPheTyrIleLeuTrpSerPheLeuThrThrIlePheValIl : 145 ... |||::: ! ! !|||! !!:!||||||.!!|||.!!:!!:! SerLeuPheTyrIleThrCysSerSerTrpPheTyrLeuThrAlaIleIleMetVa 1038258 : tctttattttatataacatGTTCGTCATGGTTTTACTTAACAGCAATAATTATGGT : 1038202 146 : eCysGlyProLeuTyrThrValGlnThrPheProThrHisAlaIleTyrProPheS : 164 ! !||| !||| !! ! !.!. !!|||||||||:!!|||:!!||||||||| lLeuGlySerLeuLeuIleSerAspProPheProThrAsnAlaValTyrProPheP 1038201 : TCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACCAACGCAGTATATCCATTCC : 1038145 165 : erValArgArgHisLeuTyrLysGlyLeuIlePhePheHisGlnSerLeuValGly : 182 !!|||!.! !.!.! !! !:!.!!:!!||||||.!.|||||||||!!!|||||| roValAsnPheGluProLeuArgSerIleIlePheMetHisGlnSerPheValGly 1038144 : CTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCACCAATCGTTCGTTGGC : 1038091 183 : PheGlnValSerSerGlyMetAlaIleAspThrGlnIleAlaLeuLeuLeuArgTy : 201 .!.||| !:!!:!! ! ::!!!::!!..!! !||||||||||||! !!: IleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeuLeuLeuLeuPh 1038090 : ATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTGTTATTGCTATT : 1038034 202 : rAlaThrAlaArgPheGluIleLeuGlyIleGlnPheAsnAsnAlaLysSerAspG : 220 !.!!||||||||||||||||||||| !! :!!!!.!..|||!.!!!...! !! eThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAspIleG 1038033 : CACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGATATCG : 1037977 221 : lyGluPheAspAlaCysIleLysLysHisAspGluLeuLeuArg : 234 ! !.!. ! ! !!!!:||||||:!!... :!!! !||| luThrLeuIleLysSerMetLysLysTyrSerThrValArgArg 1037976 : AAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 1037933 vulgar: AmOr142 5 234 . KQ414618.1 1039169 1037932 - 365 M 93 279 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037933 1039169 365 - . gene_id 3 ; sequence AmOr142 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1038891 1039169 . - . KQ414618.1 exonerate:protein2genome:local exon 1038891 1039169 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1038889 1038890 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1038341 1038890 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1038341 1038342 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1037933 1038340 . - . KQ414618.1 exonerate:protein2genome:local exon 1037933 1038340 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037933 1039169 365 - . alignment_id 3 ; Query AmOr142 ; Align 1039170 6 279 ; Align 1038341 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr142 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 198 Query range: 95 -> 233 Target range: 1062775 -> 1062361 96 : ArgPheGlnMetLeuTyrSerGluMetGluAsnPheCysLysGlnAlaThrAsnGl : 114 |||.!!|||:!!||| .!!:!!:!::!! ||| ||| !|||!.!!!..! ArgIleGlnValLeuValGlyLysValLysAlaPheValLysValAlaAsnLysAs 1062775 : CGTATTCAGGTGTTGGTAGGAAAAGTAAAGGCGTTTGTAAAAGTGGCAAACAAGAA : 1062721 115 : uGluLysIleIleLeuGlnArgTyrValAspArgTyrLysTyrPheHisSerPheT : 133 .|||! ! |||:!!||| !!|||||||||||||||||| ||| !.!! nGluIleLysIleIleGlnGlyTyrValAspArgTyrLysArgPhePheGlyThrI 1062720 : CGAGATTAAGATAATACAAGGATACGTGGATCGATATAAACGATTTTTCGGAACAA : 1062664 134 : yrIleLeuTrpSerPheLeuThrThrIlePheValIleCysGlyProLeuTyrThr : 151 !:!! ! ! ! ! :!!||| !||| !!! !! !.!||||||!:!:!! leAlaMetGlyTyrValMetThrGlyIleThrPheSerLeuAlaProLeuPheSer 1062663 : TAGCAATGGGATACGTAATGACTGGAATCACGTTCAGTTTGGCGCCTCTGTTTTCC : 1062610 152 : ValGlnThrPheProThrHisAlaIleTyrProPheSerValArgArgHisLeuTy : 170 |||||| !!!.|||.!! !!!.! !|||||||||:!!!:!! !! ! ValGlnGluLeuProAlaAspGlyTrpIleProPheSerIleLysProLeuGlyVa 1062609 : GTACAAGAATTGCCAGCAGACGGATGGATCCCGTTTTCCATTAAACCACTGGGAGT : 1062553 171 : rLysGlyLeuIlePhePheHisGlnSerLeuValGlyPheGlnValSerSerGlyM : 189 ! !!|||:!!!:!||| ||| !! ! ! !.!!|||..!:!!! ! !!! lTyrCysLeuValTyrPheValGlnValTyrCysIleLeuGlnThrAlaPheCysI 1062552 : ATATTGCCTCGTATACTTTGTGCAGGTTTACTGCATTCTCCAAACAGCGTTCTGCA : 1062496 190 : etAlaIleAspThrGlnIleAlaLeuLeuLeuArgTyrAlaThrAlaArgPheGlu : 207 !:::!:!:||| !..!||||||||||||:!!!!!!:!:!!.!!|||!:!!!.!!: leSerValAspPheMetIleAlaLeuLeuIleSerPheSerAlaAlaLysLeuAsp 1062495 : TTAGCGTGGATTTCATGATCGCTCTTCTAATCAGCTTCTCCGCGGCTAAATTAGAC : 1062442 208 : IleLeuGlyIleGlnPheAsnAsnAlaLysSerAspGlyGluPheAspAlaCysIl : 226 |||||||||!!::!!.!....!!.|||!!..!! !!! !! !.!.! ::!|||:! IleLeuGlyMetLysLeuArgLysAlaAsnGlyHisAspValLeuValSerCysVa 1062441 : ATACTGGGGATGAAACTGCGAAAAGCGAATGGCCACGACGTGCTGGTAAGCTGTGT : 1062385 227 : eLysLysHisAspGluLeuLeu : 233 !|||:!!|||.!.|||:!!:!! lLysGluHisGlnGluIleIle 1062384 : CAAAGAACACCAAGAGATAATA : 1062362 vulgar: AmOr142 95 233 . KQ414618.1 1062775 1062361 - 198 M 138 414 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1062362 1062775 198 - . gene_id 4 ; sequence AmOr142 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1062362 1062775 . - . KQ414618.1 exonerate:protein2genome:local exon 1062362 1062775 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1062362 1062775 198 - . alignment_id 4 ; Query AmOr142 ; Align 1062776 96 414 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr142 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 147 Query range: 0 -> 90 Target range: 1053857 -> 1053587 1 : MetLysAsnArgLeuThrProGluLysAlaIleLeuPheThrLysLeuSerValAl : 19 ||| !!!.!:!|||||||||||||||!.!||| !.!!! ! !!!!|||||||| MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : aLeuThrCysSerTrpProProSerProLeuAlaThrLysAlaGlnHisLeuPheP : 38 ||||.!! !!!!||||||! !||| !! !|||!:!||||||||| !::: | aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 39 : heAsnAlaLeuTrpCysIleAlaPheLeuThrSerValMetLeuPheLeuProLeu : 56 ||... ||| ::! :!!!:!:!!:!!!!:|||.!!||||||||| heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 57 : LeuAlaAlaIleTyrValTyrArgLysHisProValIleLeuGlyLysThrValSe : 75 ||| !:!!! !|||:!!:!! ! ! !! !:!!:!!|||..!:!!!:!:!!!! LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 76 : rLeuThrAlaAlaValAlaGlnValThrIleLysMetIleIleCys : 90 !|||:!! !!.!||| !|||:!!! !!!::!!! :!!|||||| sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCys 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGT : 1053588 vulgar: AmOr142 0 90 . KQ414618.1 1053857 1053587 - 147 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1053588 1053857 147 - . gene_id 5 ; sequence AmOr142 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1053588 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053588 1053857 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1053588 1053857 147 - . alignment_id 5 ; Query AmOr142 ; Align 1053858 1 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr147FIX Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 883 Query range: 0 -> 367 Target range: 1053857 -> 1051865 1 : MetLeuLysGlnValSerProGluLysGlyIleTyrIleIleTrpLeuSerValAl : 19 ||||||||||||:!!!!!|||||||||! !||| !!|||||||||!!!|||||||| MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : aLeuSerLeuCysTrpProLeuProIleAsnSerThrArgLysGlnIleValCysM : 38 ||||:!!:!!|||||||||||| !!! !::!:!!!:!!:! |||:!!|||.... aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 39 : etLysIleLeuGlnIleGlyAlaIleIleSerAlaPheMetIleLeuLeuProLeu : 56 ..||||||||||||||| ::! |||||||||.!!!!::!!|||||||||||| heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 57 : IleTyrThrIleTyrLeuAsnLeuAspAsnLeuAsnIlePhePheLysSerIleCy : 75 :!:|||:!!! !||||||:!!!!!|||:!!:!!! !:!!.!!! !:!!|||||||| LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 76 : sLeuLeuMetGlyValPheGlnHisIleValGlnThrIleThrCysPheIleLysT : 94 ||||! !||||||||||||||| |||:!!||||||:!!! !||||||! !!!.| sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCysPheThrAsnT 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGTTTCACCAACT : 1053578 95 : yrAspSerLeuGln >>>> Target Intron 1 >>>> ArgValValGluG : 103 ||||| !|||||| 613 bp |||:!!:!! !| yrAspLeuLeuGln++ ++ArgIleIleThrG 1053577 : ACGACCTTCTGCAGgt.........................agCGAATAATTACAG : 1052938 104 : luMetMetIleCysIleLysGluMetGlnLeu<-><->AsnGluIleMetCysAla : 119 |||||!!:! ! !:!!|||||| !|||! ! !..||||||:!: ! ! luMetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLeuHisAsn 1052937 : AAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCACAAC : 1052884 120 : TyrValAlaLysCysAsnIlePheTyrGlyGlyThrIleValLeuIleTyrThrTh : 138 |||:!! !||||||!!.:!!||||||||||||:!!:!!:!!! !! !||| ! TyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrTyrLeuCy 1052883 : TATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACATACCTCTG : 1052827 139 : rAlaThrValPheIleLeuGlyProThrPheLeuProIleThrPheProTrpGluT : 157 !|||||| !|||:!!|||||||||..! !!||||||! ! !!|||||| ! .... sAlaThrCysPheValLeuGlyProValValLeuProAsnProPheProSerSerA 1052826 : TGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGCAGTG : 1052770 158 : hrGluTyrProPheGlnValAsnTyrThrSerArgAsnPheIleIleTyrMetHis : 175 !!||||||||||||!::|||||| !||| !!! !||| !|||:!!|||:!!||| laGluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyrLeuHis 1052769 : CAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTACCTGCAC : 1052716 176 : GlnPhePhePheThrTyrGlnCysAlaAlaHisIleCysValSerMetPheValAl : 194 |||! !|||.!.!:!!:!|||! !::!||||||||||||||||||!!:|||! !|| GlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePheGlyAl 1052715 : CAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTTCGGAGC : 1052659 195 : aLeuLeuLeuTrpPheThrSerAlaArgPheGluCysLeuValLysGluLeuGlnL : 213 |||||||||||||.!!|||:!!|||||||||.!.||||||..! !|||:!!|||: aLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluValGlnG 1052658 : TCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTTCAAC : 1052602 214 : ysThrThrAsnIleGluMetLeuIleValCysLeuLysLysGlnLeuLeuLeuArg : 231 !!!:!:!!!:!|||.!.|||||||||:!!|||:!!||||||||||||||||||||| lnSerSerSerIleHisMetLeuIleIleCysValLysLysGlnLeuLeuLeuArg 1052601 : AAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCTACTACTGAGG : 1052548 232 : ArgTyrAlaGluAspValValAsnCysIleArgPheIleIle-----PheTyrThr : 248 |||! !|||||| ... !||||||:!!#####!!.!:!.!! Arg******GluAspPheAlaIleTyrAspTyrPheIleVal#####LeuPheAla 1052547 : AGGTGATAAGaagattttgcaatttatgatTACTTTATCGTAACTGATTGTTTGCC : 1052492 249 : MetAlaValSerThrIleValLeuThrLeuSerGlyIleIleLeuIleThrThrSe : 267 !!: ! !!!!! ! ! ! !..!:!!..!|||.!! ||||||..! !!: IleIlePheArgTyrAlaLysGluValValAspGlyPheArgLeuIleValLeuAs 1052491 : ATAATTTTTAGGTACGCCAAAGAAGTGGTTGACGGTTTTCGGCTTATAGTACTCAA : 1052435 268 : rSerLeuLeuValLysIleGlnPheLeuThrIle{C} >>>> Target Intro : 279 !:!!:!! !:!!!..||| ! !||||||:!!{ } 122 bp nAlaIleAlaMetSerIleLeuAlaLeuThrLeu{S}++ 1052434 : CGCTATAGCAATGAGCATTTTGGCTCTTACTCTA{A}gt................. : 1052396 280 : n 2 >>>> {ys}IleSerIleLeuLeuGluIleTyrMetTyrAlaTrpProAla : 293 {!!}.!!!!!:!!||| !||||||||||||||||||||| !!||| +-{er}PheThrValLeuAlaGluIleTyrMetTyrAlaTrpSerAla 1052395 : ........aa{GC}TTCACTGTACTCGCAGAAATTTATATGTACGCATGGTCAGCT : 1052235 294 : AspHisMetTyrAspMet >>>> Target Intron 3 >>>> SerIleThr : 302 |||:!!||| ! |||||| 80 bp ||| !! ! AspTyrMetLysAspMet++ ++SerAlaLys 1052234 : GACTACATGAAAGACATGgt.........................agAGTGCAAAG : 1052128 303 : ValLeuGlnSerValTyrAspSerMetTrpTyrGlyGlnThrLeuAsnMetGlnLy : 321 |||! !|||||||||||||||! !! !||||||||||||||||||...|||||||| ValSerGlnSerValTyrAspLeuThrTrpTyrGlyGlnThrLeuGluMetGlnLy 1052127 : GTTTCACAAAGTGTGTATGATTTAACGTGGTACGGACAAACATtggaaatgcagaa : 1052071 322 : sLeuValLeuIleThrLeuIleTyrGlnLysProValThrIleSerIleAsnValV : 340 | |||||| |||:!!:!!|||:!!||||||! !:!:|||:!!!:! !: sAsnValLeuTyrIleLeuValHisGlnGluProValIleLeuSerValSerCysI 1052070 : aaatgtattatacatattgGTACACCAAGAACCGGTAATTCTGTCAGTTAGTTGCA : 1052014 341 : alLeuProGlnLeuThrLeuHisTyrHisCysLeu >>>> Target Intron : 352 !!:!!|||:!!|||:!!|||!.!|||:!!|||! ! 65 bp leValProGluLeuSerLeuArgTyrTyrCysSer++ 1052013 : TCGTGCCGGAGCTTTCTCTTCGTTATTATTGCTCGgt................... : 1051976 353 : 4 >>>> TyrValSerAsnAlaPheSerIlePheThrAlaIleArgAlaIleIle : 367 |||:!!|||||||||||||||:!!|||||||||:!:|||!.!:!::!: ++TyrLeuSerAsnAlaPheSerValPheThrAlaLeuArgValValLeu 1051975 : ......agTACCTGTCAAATGCGTTCTCGGTTTTCACCGCTTTGCGCGTCGTGCTG : 1051868 vulgar: AmOr147FIX 0 367 . KQ414618.1 1053857 1051865 - 883 M 98 294 5 0 2 I 0 609 3 0 2 M 15 45 G 0 6 M 132 396 F 0 5 M 33 99 S 0 1 5 0 2 I 0 118 3 0 2 S 1 2 M 20 60 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 61 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1051866 1053857 883 - . gene_id 1 ; sequence AmOr147FIX ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1053564 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053564 1053857 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1053562 1053563 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052951 1053563 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052951 1052952 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052399 1052950 . - . KQ414618.1 exonerate:protein2genome:local exon 1052399 1052950 . - . insertions 6 ; deletions 0 ; frameshifts 5 KQ414618.1 exonerate:protein2genome:local splice5 1052397 1052398 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052277 1052398 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1052277 1052278 . - . intron_id 1 ; splice_site "AA" KQ414618.1 exonerate:protein2genome:local cds 1052215 1052276 . - . KQ414618.1 exonerate:protein2genome:local exon 1052215 1052276 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052213 1052214 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052135 1052214 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1052135 1052136 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051979 1052134 . - . KQ414618.1 exonerate:protein2genome:local exon 1051979 1052134 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1051977 1051978 . - . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1051914 1051978 . - . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 1051914 1051915 . - . intron_id 3 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051866 1051913 . - . KQ414618.1 exonerate:protein2genome:local exon 1051866 1051913 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1051866 1053857 883 - . alignment_id 1 ; Query AmOr147FIX ; Align 1053858 1 294 ; Align 1052951 99 45 ; Align 1052900 114 396 ; Align 1052499 246 99 ; Align 1052275 280 60 ; Align 1052135 300 156 ; Align 1051914 352 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr147FIX Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 259 Query range: 94 -> 232 Target range: 1029185 -> 1028765 95 : AspSerLeuGlnArgValValGluGluMetMetIleCysIleLysGluMetGlnLe : 113 |||!!!||||||!:!:!!:!!|||||||||! !|||||| !:!! ! !:!!! AspThrLeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysPr 1029185 : GACACGTTGCAGAAACTAATCGAAGAAATGAAGATTTGCTGTGAAACAGCGAAACC : 1029131 114 : uAsnGlu<-><->IleMetCysAlaTyrValAlaLysCysAsnIlePheTyrGlyG : 130 ! !!||| :!!.!. !||||||! !|||! !::!:!!||||||! ! oTyrGluArgAspValPheGlnArgTyrValAspLysTyrSerLeuPheTyrValT 1029130 : ATACGAAAGAGACGTCTTTCAACGATACGTCGATAAATACTCTTTATTTTACGTAA : 1029074 131 : lyThrIleValLeuIleTyrThrThrAlaThrValPheIleLeuGlyProThrPhe : 148 ! ! !! !.!!||| !||||||..!:!!.!.:!!|||||| ! !.!! hrCysSerSerTrpPheTyrLeuThrAlaValIleMetValLeuGlySerArgIle 1029073 : CATGTTCGTCGTGGTTTTACTTAACAGCAGTTATTATGGTTCTGGGAAGTCGGATT : 1029020 149 : LeuProIleThrPheProTrpGluThrGluTyrProPheGlnValAsnTyrThrSe : 167 :!! !! ! !!|||||| .!..!!! !|||||||||! ||||||!:! ! ! IleSerAspProPheProThrAsnAlaValTyrProPheProValAsnPheGluPr 1029019 : ATATCTGATCCTTTTCCAACCAACGCCGTATATCCATTCCCTGTTAACTTTGAACC : 1028963 168 : rArgAsnPheIleIleTyrMetHisGlnPhePhePheThrTyrGlnCysAlaAlaH : 186 ! !!.. !||||||!:!|||||||||! ||| !! ! ||||||||||||| oLeuArgSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaH 1028962 : CTTGAGAAGTATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCAC : 1028906 187 : isIleCysValSerMetPheValAlaLeuLeuLeuTrpPheThrSerAlaArgPhe : 204 ||! ! !!:!!!:!:!!.!...!|||||||||||| |||.!!:!!||||||||| isThrSerMetAsnValLeuThrAlaLeuLeuLeuLeuPheAlaAlaAlaArgPhe 1028905 : ACACTAGTATGAATGTGCTAACTGCATTGTTATTACTATTTGCTGCAGCTCGTTTC : 1028852 205 : GluCysLeuValLysGluLeuGlnLysThrThrAsnIleGluMetLeuIleValCy : 223 ||| |||:!!! !||||||::!!!...!!:!:!!||||||! |||||| !|| GluIleLeuMetMetGluLeuArgAsnValSerAspIleGluThrLeuIleLysCy 1028851 : GAGATACTGATGATGGAGCTGAGGAATGTCAGTGACATTGAAACACTGATTAAATG : 1028795 224 : sLeuLysLysGlnLeuLeuLeuArgArg : 232 |:!!|||||| ! ! !:!!:!!|||||| sMetLysLysTyrSerIleValArgArg 1028794 : TATGAAAAAGTATTCGATCGTACGGAGG : 1028766 vulgar: AmOr147FIX 94 232 . KQ414618.1 1029185 1028765 - 259 M 21 63 G 0 6 M 117 351 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028766 1029185 259 - . gene_id 2 ; sequence AmOr147FIX ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028766 1029185 . - . KQ414618.1 exonerate:protein2genome:local exon 1028766 1029185 . - . insertions 6 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028766 1029185 259 - . alignment_id 2 ; Query AmOr147FIX ; Align 1029186 95 63 ; Align 1029117 116 351 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr147FIX Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 245 Query range: 94 -> 232 Target range: 1038352 -> 1037932 95 : AspSerLeuGlnArgValValGluGluMetMetIleCysIleLysGluMetGlnLe : 113 |||!!!||||||!:!:!!:!!|||||||||! !|||||| !:!! ! :!!! AspThrLeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysPr 1038352 : GACACGTTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACC : 1038298 114 : uAsnGlu<-><->IleMetCysAlaTyrValAlaLysCysAsnIlePheTyrGlyG : 130 ! !!||| :!!.!. !|||||| !||| ::::::|||||| oTyrGluArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleT 1038297 : ATACGAAAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataa : 1038241 131 : lyThrIleValLeuIleTyrThrThrAlaThrValPheIleLeuGlyProThrPhe : 148 ! !! !.!!||| !||||||! !:!!.!.:!!|||||| ! !.!! hrCysSerSerTrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeu 1038240 : catGTTCGTCATGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTT : 1038187 149 : LeuProIleThrPheProTrpGluThrGluTyrProPheGlnValAsnTyrThrSe : 167 :!! !! ! !!|||||| .!..!!! !|||||||||! ||||||!:! ! ! IleSerAspProPheProThrAsnAlaValTyrProPheProValAsnPheGluPr 1038186 : ATATCCGATCCTTTTCCAACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACC : 1038130 168 : rArgAsnPheIleIleTyrMetHisGlnPhePhePheThrTyrGlnCysAlaAlaH : 186 ! !!.. !||||||!:!|||||||||! ||| !! ! ||||||||||||| oLeuArgSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaH 1038129 : CTTGAGAAGCATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCAC : 1038073 187 : isIleCysValSerMetPheValAlaLeuLeuLeuTrpPheThrSerAlaArgPhe : 204 || ! !!:!!!:!:!!.!! !|||||||||||| ||||||!!!||||||||| isAlaSerMetAsnValLeuSerAlaLeuLeuLeuLeuPheThrThrAlaArgPhe 1038072 : ACGCTAGTATGAATGTGCTTTCTGCACTGTTATTGCTATTCACTACAGCtcgtttc : 1038019 205 : GluCysLeuValLysGluLeuGlnLysThrThrAsnIleGluMetLeuIleValCy : 223 ||| |||:!!! !||||||::!!!...!!.!:!!||||||! |||||| ! ! GluIleLeuMetThrGluLeuArgAsnValAsnAspIleGluThrLeuIleLysSe 1038018 : gaaatattgaTGACGGAGTTGAGGAATGTCAATGATATCGAAACACTGATTAAGAG : 1037962 224 : sLeuLysLysGlnLeuLeuLeuArgArg : 232 !:!!|||||| ! ! ! !:!!|||||| rMetLysLysTyrSerThrValArgArg 1037961 : TATGAAAAAGTATTCGACTGTGCGGAGG : 1037933 vulgar: AmOr147FIX 94 232 . KQ414618.1 1038352 1037932 - 245 M 21 63 G 0 6 M 117 351 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037933 1038352 245 - . gene_id 3 ; sequence AmOr147FIX ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1037933 1038352 . - . KQ414618.1 exonerate:protein2genome:local exon 1037933 1038352 . - . insertions 6 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037933 1038352 245 - . alignment_id 3 ; Query AmOr147FIX ; Align 1038353 95 63 ; Align 1038284 116 351 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr147FIX Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 0 -> 98 Target range: 1058517 -> 1058223 1 : MetLeuLysGlnValSerProGluLysGlyIleTyrIleIleTrpLeuSerValAl : 19 ||| !|||...:!!!!!||||||:!!!.!|||! .!!! ||||||||||| MetArgLysSerIleThrProGluGlnAlaIleSerPheThrLysLeuSerValAl 1058517 : ATGAGGAAAAGTATAACGCCGGAACAAGCGATCTCGTTCACGAAACTGAGCGTCGC : 1058463 20 : aLeuSerLeuCysTrpProLeuProIleAsnSerThrArgLysGlnIleValCysM : 38 |:!!!!!! !! ||||||! ! !! ! :!!||||||! |||:!!:!! !. aValThrCysSerTrpProProSerProLeuAlaThrArgThrGlnValLeuLeuP 1058462 : TGTAACTTGTTCGTGGCCACCGTCACCTCTGGCGACCAGAACTCAAGTTTTGCTCT : 1058406 39 : etLysIleLeuGlnIleGlyAlaIleIleSerAlaPheMetIleLeuLeuProLeu : 56 !.!!.! ||| !! ! !|||.!!:!!|||.!!.!! !:!:|||||||||||| heAsnThrLeuTrpSerThrAlaPheValSerThrIleAlaLeuLeuLeuProLeu 1058405 : TTAATACGTTGTGGAGCACAGCATTCGTTAGCACCATCGCGCTGCTTTTGCCGCTA : 1058352 57 : IleTyrThrIleTyrLeuAsnLeuAspAsnLeuAsnIlePhePheLysSerIleCy : 75 :!: ! !|||||| ! !!! ! ! :!!! !! !|||.!! |||!!!:!! ! LeuSerGlyIleTyrGluTyrArgLysAspProIleIleLeuGlyLysThrValSe 1058351 : TTGAGCGGAATTTACGAGTACCGTAAAGACCCCATCATTCTTGGGAAAACAGTCAG : 1058295 76 : sLeuLeuMetGlyValPheGlnHisIleValGlnThrIleThrCysPheIleLysT : 94 !||| ! !!.!||| !||| !:!!:!!! !|||! !||| !.!!:!! rLeuAlaSerAlaValAlaGlnValAlaIleLysMetIleMetCysArgPheGlnG 1058294 : CCTCGCCTCGGCTGTCGCCCAGGTGGCAATCAAAATGATAATGTGCCGTTTCCAGC : 1058238 95 : yrAspSerLeuGln : 98 ! ! ..!!!!||| lnLysGlnPheGln 1058237 : AGAAGCAATTCCAG : 1058224 vulgar: AmOr147FIX 0 98 . KQ414618.1 1058517 1058223 - 119 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1058224 1058517 119 - . gene_id 4 ; sequence AmOr147FIX ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1058224 1058517 . - . KQ414618.1 exonerate:protein2genome:local exon 1058224 1058517 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1058224 1058517 119 - . alignment_id 4 ; Query AmOr147FIX ; Align 1058518 1 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr148 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 970 Query range: 0 -> 369 Target range: 1053857 -> 1051856 1 : MetLeuLysTyrValThrProGluLysGlyIleTyrIleValTrpLeuSerValAl : 19 ||||||||| ! :!!||||||||||||! !||| !!|||:!!|||!!!|||||||| MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : aLeuSerLeuCysTrpProLeuProAlaSerSerThrArgLysGlnIleValCysI : 38 ||||:!!:!!|||||||||||| !!::!|||:!!!:!!:! |||:!!|||.... aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 39 : leLysIleLeuGlnIleGlyAlaIleIleSerAlaPheMetValLeuLeuProLeu : 56 ..||||||||||||||| ::! |||||||||.!!!!::!!|||||||||||| heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 57 : IleTyrAlaIleHisLeuAsnIleHisAsnLeuIleAsnLeuPheLysCysIleCy : 75 :!:|||:!!! !:!!|||:!!.!! !!:!!:!!||| !|||! !:!! !!||||| LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 76 : sLeuLeuIleCysValPheGlnAsnIleIleGlnThrIleIleCysPheIleLysT : 94 ||||! !!!: !!|||||||||! |||!!:||||||:!!|||||||||! !!!.| sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCysPheThrAsnT 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGTTTCACCAACT : 1053578 95 : yrAspValLeuGln >>>> Target Intron 1 >>>> ArgValValGluG : 103 |||||:!!|||||| 613 bp |||:!!:!! !| yrAspLeuLeuGln++ ++ArgIleIleThrG 1053577 : ACGACCTTCTGCAGgt.........................agCGAATAATTACAG : 1052938 104 : luMetMetThrCysValLysGluGluGlnLeuTyr<-><->LysValLeuCysIle : 119 |||||!!:|||! !|||||||||! !|||! !!:! :!!:!!||| !! ! luMetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLeuHisAsn 1052937 : AAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCACAAC : 1052884 120 : TyrValLysLysCysAsnIlePheTyrGlyGlyThrIleValLeuThrTyrGlyAl : 138 |||:!!:!!||||||!!.:!!||||||||||||:!!:!!:!!! !|||||| !.. TyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrTyrLeuCy 1052883 : TATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACATACCTCTG : 1052827 139 : aAlaThrValPheValLeuGlyProThrPheLeuProIleSerPheProTrpGluT : 157 !|||||| !|||||||||||||||..! !!||||||! ! !!|||||| ! .... sAlaThrCysPheValLeuGlyProValValLeuProAsnProPheProSerSerA 1052826 : TGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGCAGTG : 1052770 158 : hrGluTyrProPheGlnIleAsnAspThrSerArgAsn<->IleIleTyrIleHis : 174 !!||||||||||||!:::!!||| !||| !!! !||| |||:!!|||:!:||| laGluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyrLeuHis 1052769 : CAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTACCTGCAC : 1052716 175 : GlnPhePhePheThrTyrGlnCysAlaAlaHisIleCysLeuSerLeuPheGlyAl : 193 |||! !|||.!.!:!!:!|||! !::!||||||||||||:!!|||:!!|||||||| GlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePheGlyAl 1052715 : CAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTTCGGAGC : 1052659 194 : aLeuLeuLeuTrpPheAlaAlaAlaArgPheGluCysLeuValGluGluLeuGlnL : 212 |||||||||||||.!!.!!||||||||||||.!.||||||..! !|||:!!|||: aLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluValGlnG 1052658 : TCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTTCAAC : 1052602 213 : ysIleThrAsnIleAspMetLeuIleValCysPheLysLysLeuLeuLeuLeuArg : 230 !!! !:!!!:!||| !!|||||||||:!!||| !!||||||! !|||||||||||| lnSerSerSerIleHisMetLeuIleIleCysValLysLysGlnLeuLeuLeuArg 1052601 : AAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCTACTACTGAGG : 1052548 231 : {Ar} >>>> Target Intron 2 >>>> {g}TyrAlaGluGluValValSe : 238 {||} 65 bp {|}||||||:!!|||||||||.. {Ar}++ ++{g}TyrAlaLysGluValValAs 1052547 : {AG}gt.........................ag{G}TACGCCAAAGAAGTGGTTGA : 1052459 239 : rCysIleArgPheLeuValPheTyrAlaIleAlaValGlyThrPheMetLeuThrL : 257 ! !!.!!|||.!!:!!|||.!! !!|||||||||:!!.!!! !!!. ||||||| pGlyPheArgLeuIleValLeuAsnAlaIleAlaMetSerIleLeuAlaLeuThrL 1052458 : CGGTTTTCGGCTTATAGTACTCAACGCTATAGCAATGAGCATTTTGGCTCTTACTC : 1052402 258 : euSerGlyIleIleMetIleIle >>>> Target Intron 3 >>>> AsnS : 266 |||||.!!|||! !:!:|||!!: 62 bp .!.! euSerSerIleThrLeuIleMet++ ++GluI 1052401 : TAAGTAGTATTACATTAATAATGgt.........................agGAAA : 1052313 267 : erProIleLeuValLysIleGlnPheIleIleIleCysMetSerSerLeuMetGlu : 284 !|||:!!:!!||||||:!:||||||:!!! !:!! !!.!.!!! !||| ||| leProLeuIleValLysValGlnPheValThrValSerPheThrValLeuAlaGlu 1052312 : TACCGTTAATTGTGAAAGTGCAATTCGTAACTGTAAGCTTCACTGTACTCGCAGAA : 1052259 285 : IleTyrMetTyrAlaTrpProAlaAspHisMetGlnAspAla >>>> Target : 299 |||||||||||||||||| !!||||||:!!|||:!!||| ! 80 IleTyrMetTyrAlaTrpSerAlaAspTyrMetLysAspMet++ 1052258 : ATTTATATGTACGCATGGTCAGCTGACTACATGAAAGACATGgt............ : 1052212 300 : Intron 4 >>>> SerIleAsnIleLeuArgSerAlaTyrAsnSerIleTrpTy : 312 bp ||| !!!.:!!! !!:!|||!.!|||:!!! !! ||||| ++SerAlaLysValSerGlnSerValTyrAspLeuThrTrpTy 1052211 : .............agAGTGCAAAGGTTTCACAAAGTGTGTATGATTTAACGTGGTA : 1052095 313 : rGluGlnSerLeuAspMetGlnLysAspLeuLeuIleIleLeuMetTyrGlnArgP : 331 |! !|||!!!|||:::|||||||||::::::||| ||||||:!::!!|||..!| rGlyGlnThrLeuGluMetGlnLysAsnValLeuTyrIleLeuValHisGlnGluP 1052094 : CGGACAAACATtggaaatgcagaaaaatgtattatacatattgGTACACCAAGAAC : 1052038 332 : roValIleLeuSerIleAsnValLeuLeuProGluLeuThrLeuArgTyrTyrCys : 349 ||||||||||||||:!!!:! !:!!:!!|||||||||:!!||||||||||||||| roValIleLeuSerValSerCysIleValProGluLeuSerLeuArgTyrTyrCys 1052037 : CGGTAATTCTGTCAGTTAGTTGCATCGTGCCGGAGCTTTCTCTTCGTTATTATTGC : 1051984 350 : Ser >>>> Target Intron 5 >>>> TyrValAlaAsnAlaPheSerVal : 358 ||| 65 bp |||:!!:!!||||||||||||||| Ser++ ++TyrLeuSerAsnAlaPheSerVal 1051983 : TCGgt.........................agTACCTGTCAAATGCGTTCTCGGTT : 1051892 359 : PheThrAlaLeuArgAlaValValGluAspLys : 369 |||||||||||||||!.!|||:!!!!:! ||| PheThrAlaLeuArgValValLeuAspAlaLys 1051891 : TTCACCGCTTTGCGCGTCGTGCTGGATGCAAAA : 1051857 vulgar: AmOr148 0 369 . KQ414618.1 1053857 1051856 - 970 M 98 294 5 0 2 I 0 609 3 0 2 M 16 48 G 0 6 M 55 165 G 0 3 M 61 183 S 0 2 5 0 2 I 0 61 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 34 102 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 61 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1051857 1053857 970 - . gene_id 1 ; sequence AmOr148 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1053564 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053564 1053857 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1053562 1053563 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052951 1053563 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052951 1052952 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052544 1052950 . - . KQ414618.1 exonerate:protein2genome:local exon 1052544 1052950 . - . insertions 9 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052542 1052543 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052479 1052543 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1052479 1052480 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052379 1052478 . - . KQ414618.1 exonerate:protein2genome:local exon 1052379 1052478 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052377 1052378 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052317 1052378 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1052317 1052318 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052215 1052316 . - . KQ414618.1 exonerate:protein2genome:local exon 1052215 1052316 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052213 1052214 . - . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052135 1052214 . - . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 1052135 1052136 . - . intron_id 3 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051979 1052134 . - . KQ414618.1 exonerate:protein2genome:local exon 1051979 1052134 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1051977 1051978 . - . intron_id 5 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1051914 1051978 . - . intron_id 5 KQ414618.1 exonerate:protein2genome:local splice3 1051914 1051915 . - . intron_id 4 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051857 1051913 . - . KQ414618.1 exonerate:protein2genome:local exon 1051857 1051913 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1051857 1053857 970 - . alignment_id 1 ; Query AmOr148 ; Align 1053858 1 294 ; Align 1052951 99 48 ; Align 1052897 115 165 ; Align 1052729 170 183 ; Align 1052478 232 99 ; Align 1052317 265 102 ; Align 1052135 299 156 ; Align 1051914 351 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr148 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 414 Query range: 0 -> 231 Target range: 1030017 -> 1028765 1 : MetLeuLysTyrValThrProGluLysGlyIleTyrIleValTrpLeuSerValAl : 19 |||||||||||| !!:!||||||!:!!.!|||! !:!!||| :!!! !..!|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1030017 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1029963 20 : aLeuSerLeuCysTrpProLeuProAlaSerSerThrArgLysGlnIleValCysI : 38 |!!!!!!! !|||||||||||||||:!!!!!:!!|||!:!...! !:!::!! . aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1029962 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1029906 39 : leLysIleLeuGlnIleGlyAlaIleIleSerAlaPheMetValLeuLeuProLeu : 56 !!|||||||||::! ! ! !:!!:!!!:!|||!!.:!!:!!!!!||||||||| heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1029905 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1029852 57 : IleTyrAlaIleHisLeuAsnIleHisAsnLeuIleAsnLeuPheLysCysIleCy : 75 :!!||||||:!:|||:!!:!! !:!!:!! ! |||:!! |||..! !|| LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1029851 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1029795 76 : sLeuLeuIleCysValPheGlnAsnIleIleGlnThrIleIleCysPheIleLysT : 94 |||| !:!!..!::: ||| ......||||||.!!:!!|||.!! !:!!| sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1029794 : CCTGACGCTTGCCctcgtgcaaatatttttccagacTTTCGTTTGCATCGGCCAAT : 1029738 95 : yrAspValLeuGln >>>> Target Intron 1 >>>> ArgValValGluG : 103 ||||| !!!!||| 550 bp !:!:!!:!!|||| yrAspHisPheGln++ ++LysLeuIleGluG 1029737 : ACGATCATTTTCAGgt.........................agAAACTAATCGAAG : 1029161 104 : luMetMetThrCysValLysGluGluGlnLeuTyrLys<-><->ValLeuCysIle : 119 |||||! !! !||| !:!! !! !:!!! !|||:!! |||!!! ! luMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheGlnArg 1029160 : AAATGAAGATTTGCTGTGAAACAGCGAAACCATACGAAAGAGACGTCTTTCAACGA : 1029107 120 : TyrValLysLysCysAsnIlePheTyrGlyGlyThrIleValLeuThrTyrGlyAl : 138 |||||| ! |||! !::!:!!||||||! ! ! ! !! ! !||| !.! TyrValAspLysTyrSerLeuPheTyrValThrCysSerSerTrpPheTyrLeuTh 1029106 : TACGTCGATAAATACTCTTTATTTTACGTAACATGTTCGTCGTGGTTTTACTTAAC : 1029050 139 : aAlaThrValPheValLeuGlyProThrPheLeuProIleSerPheProTrpGluT : 157 !|||..!:!!.!.||||||||| ! !.!!:!! !! ! !!|||||| .!.. rAlaValIleMetValLeuGlySerArgIleIleSerAspProPheProThrAsnA 1029049 : AGCAGTTATTATGGTTCTGGGAAGTCGGATTATATCTGATCCTTTTCCAACCAACG : 1028993 158 : hrGluTyrProPheGlnIleAsn<->AspThrSerArgAsnIleIleTyrIleHis : 174 !!! !|||||||||! :!!||| !!: !!! !|||!:!||||||!:!!!:||| laValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHis 1028992 : CCGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGTATCATTTTTATGCAC : 1028939 175 : GlnPhePhePheThrTyrGlnCysAlaAlaHisIleCysLeuSerLeuPheGlyAl : 193 |||! ||| !! ! |||||||||||||||! ! !!:!!!:!:!!.!. !|| GlnSerPheValGlyIleGlnCysAlaAlaHisThrSerMetAsnValLeuThrAl 1028938 : CAATCGTTCGTTGGCATACAGTGTGCTGCACACACTAGTATGAATGTGCTAACTGC : 1028882 194 : aLeuLeuLeuTrpPheAlaAlaAlaArgPheGluCysLeuValGluGluLeuGlnL : 212 |||||||||| ||||||||||||||||||||| |||:!! !||||||::!! aLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuMetMetGluLeuArgA 1028881 : ATTGTTATTACTATTTGCTGCAGCTCGTTTCGAGATACTGATGATGGAGCTGAGGA : 1028825 213 : ysIleThrAsnIleAspMetLeuIleValCysPheLysLysLeuLeuLeuLeuArg : 230 !.:!!!:!:!!|||!!:! |||||| !|||.!.||||||! !! !:!!:!!||| snValSerAspIleGluThrLeuIleLysCysMetLysLysTyrSerIleValArg 1028824 : ATGTCAGTGACATTGAAACACTGATTAAATGTATGAAAAAGTATTCGATCGTACGG : 1028771 231 : Arg : 231 ||| Arg 1028770 : AGG : 1028766 vulgar: AmOr148 0 231 . KQ414618.1 1030017 1028765 - 414 M 98 294 5 0 2 I 0 546 3 0 2 M 17 51 G 0 6 M 49 147 G 0 3 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028766 1030017 414 - . gene_id 2 ; sequence AmOr148 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1029724 1030017 . - . KQ414618.1 exonerate:protein2genome:local exon 1029724 1030017 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1029722 1029723 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1029174 1029723 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1029174 1029175 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028766 1029173 . - . KQ414618.1 exonerate:protein2genome:local exon 1028766 1029173 . - . insertions 9 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028766 1030017 414 - . alignment_id 2 ; Query AmOr148 ; Align 1030018 1 294 ; Align 1029174 99 51 ; Align 1029117 116 147 ; Align 1028967 165 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr148 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 203 Query range: 0 -> 98 Target range: 1039184 -> 1038890 1 : MetLeuLysTyrValThrProGluLysGlyIleTyrIleValTrpLeuSerValAl : 19 |||||||||||| !!:!||||||!:!!.!|||! !:!!||| :!!! !..!|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1039184 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1039130 20 : aLeuSerLeuCysTrpProLeuProAlaSerSerThrArgLysGlnIleValCysI : 38 |!!!!!!! !|||||||||||||||:!!!!!:!!|||!:!...! !:!::!! . aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1039129 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1039073 39 : leLysIleLeuGlnIleGlyAlaIleIleSerAlaPheMetValLeuLeuProLeu : 56 !!|||||||||::! ! ! !:!!:!!!:!|||!!.:!!:!!!!!||||||||| heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1039072 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1039019 57 : IleTyrAlaIleHisLeuAsnIleHisAsnLeuIleAsnLeuPheLysCysIleCy : 75 :!!||||||:!:|||:!!:!! !:!!:!! ! |||:!! |||..! !|| LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1039018 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1038962 76 : sLeuLeuIleCysValPheGlnAsnIleIleGlnThrIleIleCysPheIleLysT : 94 |||| !:!!..!::: ||| ......||||||...:::|||.!! !:!!| sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1038961 : CCTGACGCTTGCTctcgtgcaaatatttttccaaactttcgttTGCATCGGTCAAT : 1038905 95 : yrAspValLeuGln : 98 ||||| !!!!||| yrAspHisPheGln 1038904 : ACGATCATTTTCAG : 1038891 vulgar: AmOr148 0 98 . KQ414618.1 1039184 1038890 - 203 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1038891 1039184 203 - . gene_id 3 ; sequence AmOr148 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1038891 1039184 . - . KQ414618.1 exonerate:protein2genome:local exon 1038891 1039184 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1038891 1039184 203 - . alignment_id 3 ; Query AmOr148 ; Align 1039185 1 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr148 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 171 Query range: 298 -> 368 Target range: 1028204 -> 1027918 299 : SerIleAsnIleLeuArgSerAlaTyrAsnSerIleTrpTyrGluGlnSerLeuAs : 317 ||| ||||||:!!!:!.!! !|||.!.|||! !|||||||||!:!|||||| SerGluAsnIleMetGlnGlyIleTyrGluSerLysTrpTyrGluArgSerLeuLy 1028204 : AGCGAGAACATAATGCAAGGAATATATGAATCAAAATGGTACGAACGAtctctaaa : 1028150 318 : pMetGlnLysAspLeuLeuIleIleLeuMetTyrGlnArgProValIleLeuSerI : 336 :::||||||..! !:!!:!!!!:|||! !||| !||||||! !:!!!.!| sIleGlnLysSerThrValLeuMetLeuThrProGlnSerProValThrValLysI 1028149 : aattcaaaagtcTACAGTCCTCATGTTGACTCCTCAATCTCCGGTGACAGTAAAAA : 1028093 337 : leAsnValLeuLeuProGluLeuThrLeuArgTyrTyrCysSer >>>> Targe : 351 ||!!. !|||:!!|||! |||:::|||...:::||||||||| leLysCysLeuIleProValLeuSerLeuAsnPheTyrCysSer++ 1028092 : TCAAGTGCCTCATTCCAGttctttctttgaatttttactgCTCGgt.......... : 1028046 352 : t Intron 1 >>>> TyrValAlaAsnAlaPheSerValPheThrAlaLeuArg : 363 76 bp ||||||:!!|||!.!||||||:!!||||||||||||||| ++TyrValSerAsnValPheSerLeuPheThrAlaLeuArg 1028045 : ...............agTACGTCTCAAATGTGTTCTCTTTATTTACCGCTTTAAGA : 1027936 364 : AlaValValGluAsp : 368 !|||:!! !||| IleValMetIleAsp 1027935 : ATAGTCATGATAGAC : 1027919 vulgar: AmOr148 298 368 . KQ414618.1 1028204 1027918 - 171 M 52 156 5 0 2 I 0 72 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1027919 1028204 171 - . gene_id 4 ; sequence AmOr148 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1028049 1028204 . - . KQ414618.1 exonerate:protein2genome:local exon 1028049 1028204 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1028047 1028048 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1027973 1028048 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1027973 1027974 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1027919 1027972 . - . KQ414618.1 exonerate:protein2genome:local exon 1027919 1027972 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1027919 1028204 171 - . alignment_id 4 ; Query AmOr148 ; Align 1028205 299 156 ; Align 1027973 351 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr148 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 138 Query range: 115 -> 225 Target range: 1058083 -> 1057750 116 : ValLeuCysIleTyrValLysLysCysAsnIlePheTyrGlyGlyThrIleValLe : 134 |||||| !|||||| ! !:!! !!!. !|||:!!||| ! !|||:!!! ValLeuGlnArgTyrValAspArgTyrLysTyrPheHisGlyIleTyrIleLeuTr 1058083 : gtcCTGCAACGATACGTGGACAGATACAAATACTTTCATGGGATTTATATATTATG : 1058029 135 : uThrTyrGlyAlaAlaThrValPheValLeuGlyProThrPheLeuProIleSerP : 153 ! !!:! !.!!.!!! ! !! !!:!! !|||||| !!:!! !||| !!!| pCysPheLeuThrThrIlePheValIleSerGlyProLeuTyrSerProGlnThrP 1058028 : GTGCTTCCTCACGACCATCTTCGTCATAAGTGGTCCATTGTACTCACCACAGACGT : 1057972 154 : heProTrpGluThrGluTyrProPheGlnIleAsnAspThr<->SerArgAsnIle : 170 ||||| .!..!! !||||||||||||:!:.!. !!||| ! !!:: ::: heProThrHisAlaIleTyrProPheGlnValGluHisThrLeuPheLysIleVal 1057971 : TCCCCACTCATGCGATATATCCTTTCCAAGTGGAACATACACTGTTCAagattgtt : 1057918 171 : IleTyrIleHisGlnPhePhePheThrTyrGlnCysAlaAlaHisIleCysLeuSe : 189 ||||||...||||||! !!. !! !!:!|||...:!!||| !!!:..!:!!.. IleTyrPheHisGlnSerLeuValGlyPheGlnAlaSerAlaGlyMetAlaIleAs 1057917 : atttatttccatCAGTCGTTAGTTGGTTTTCAGGCGTCCGCTGGTATGGCCATCGA : 1057861 190 : rLeuPheGlyAlaLeuLeuLeuTrpPheAlaAlaAlaArgPheGluCysLeuValG : 208 ! ! !|||||||||||| ! !:!|||||||||||||||||| |||! !. pThrGlnIleAlaLeuLeuLeuArgTyrAlaAlaAlaArgPheGluLeuLeuGlyA 1057860 : CACTCAAATTGCTCTTCTTCTGCGATACGCGGCTGCCAGGTTCGAGCTATTGGGAA : 1057804 209 : luGluLeuGlnLysIleThrAsnIleAspMetLeuIleValCysPheLysLys : 225 !.|||:!!!:!!!. !!.!!.! ! ! !!!! !!.!|||.!.:!!||| snGluMetArgAsnAlaAsnThrHisCysGluPheAsnAlaCysIleGluLys 1057803 : ACGAGATGCGAAATGCAAATACTCACTGTGAATTCAATGCCTGCATAGAGAAG : 1057751 vulgar: AmOr148 115 225 . KQ414618.1 1058083 1057750 - 138 M 51 153 G 0 3 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057751 1058083 138 - . gene_id 5 ; sequence AmOr148 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1057751 1058083 . - . KQ414618.1 exonerate:protein2genome:local exon 1057751 1058083 . - . insertions 3 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057751 1058083 138 - . alignment_id 5 ; Query AmOr148 ; Align 1058084 116 153 ; Align 1057928 167 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr148 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 298 -> 350 Target range: 1035766 -> 1035610 299 : SerIleAsnIleLeuArgSerAlaTyrAsnSerIleTrpTyrGluGlnSerLeuAs : 317 ||| ||||||:!!!:!.!! !|||.!.|||! !|||||||||!:!|||||| SerGluAsnIleMetGlnGlyIleTyrGluSerLysTrpTyrGluArgSerLeuLy 1035766 : AGCGAGAACATAATGCAAGGAATATATGAATCGAAATGGTACGAACGAtctctaaa : 1035712 318 : pMetGlnLysAspLeuLeuIleIleLeuMetTyrGlnArgProValIleLeuSerI : 336 :::||||||..! !:!!:!!!!:|||! !||| !||||||! !:!!!.!| sIleGlnLysSerThrValLeuMetLeuThrProGlnSerProValThrValLysI 1035711 : aattcaaaagtcTACAGTCCTCATGTTGACTCCTCAATCTCCGGTGACAGTAAAAA : 1035655 337 : leAsnValLeuLeuProGluLeuThrLeuArgTyrTyrCysSer : 350 ||!!. !|||:!!|||! |||:::|||...:::||||||||| leLysCysLeuIleProValLeuSerLeuAsnPheTyrCysSer 1035654 : TCAAGTGCCTCATTCCAGttctttctttgaatttttactgCTCG : 1035611 vulgar: AmOr148 298 350 . KQ414618.1 1035766 1035610 - 127 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1035611 1035766 127 - . gene_id 6 ; sequence AmOr148 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1035611 1035766 . - . KQ414618.1 exonerate:protein2genome:local exon 1035611 1035766 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1035611 1035766 127 - . alignment_id 6 ; Query AmOr148 ; Align 1035767 299 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr145 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 933 Query range: 0 -> 307 Target range: 1063143 -> 1061750 1 : MetGlyMetLeuAsnMetAsnIleArgGlnValPheTyrIleLeuGluLeuThrGl : 19 |||.!!:!!!!!||| !||||||!.!!:!|||.!!:!!||||||||||||.!!|| MetSerLeuPheAsnAlaAsnIleHisArgValLeuHisIleLeuGluLeuAlaGl 1063143 : ATGAGCCTGTTCAACGCGAACATTCATCGAGTACTTCATATACTAGAATTGGCTGG : 1063089 20 : yThrPheThrCysAlaTrpProIleAsnProAsnAspSerLysThrTyrIleIleI : 38 |! !|||||||||.!!||||||:!!:!! !!|||..!||||||! ! ! :!!:!!. yArgPheThrCysThrTrpProLeuAspSerAsnSerSerLysArgGluValValP 1063088 : AAGGTTCACGTGTACCTGGCCGTTAGATTCTAACAGCAGTAAAAGAGAAGTTGTCT : 1063032 39 : leArgAsnIleLeuTrpIlePheThrIleLeuAsnValIlePheLeuAlaIleSer : 56 !!||||||:!!! !||| !|||||||||||||||||||||!!.||| !|||||| heArgAsnValArgTrpGlyPheThrIleLeuAsnValIleLeuLeuLeuIleSer 1063031 : TTCGTAACGTTCGATGGGGTTTCACGATACTAAACGTGATATTACTACTGATATCC : 1062978 57 : MetIlePheAlaIlePheHisPheArgSerAspIleProLysSerMetLysThrAl : 75 :!!|||.!.||||||||||||||||||::!|||||| ||||||||| LeuIleLeuAlaIlePheHisPheArgAsnAspIleThrIleLeuMetLysThrIl 1062977 : TTGATACTcgcgatttttcactttcgaaaCGACATaactattttaatgaaaaccaT : 1062921 76 : aSerGluMetAlaAlaLeuLeuGluValAlaLeuAspLeuAlaLeuPheLysTrpA : 94 !|||||||||.!!||||||||||||||| !:!!|||:!! !|||! !||| !! eSerGluMetThrAlaLeuLeuGluValLeuMetAspMetIleLeuCysLysMetL 1062920 : CTCCGAGATGACTGCTCTGCTGGAGGTGTTGATGGACATGATTCTCTGCAAAATGA : 1062864 95 : snAsnSerGluLeuGln >>>> Target Intron 1 >>>> IleLeuIleG : 103 !.!:!:!!:!!|||||| 80 bp :!:|||:!!! ysSerAlaGlnLeuGln++ ++ValLeuValG 1062863 : AGAGTGCACAGCTTCAggt.........................agGTGTTGGTAG : 1062757 104 : luGluValLysSerPheLeuGluIleAlaAspGluTyrGluIleLysIleLeuGln : 121 !:!!||||||:!!|||:!!:!!:!:|||:!!:!! !!||||||||||||:!!||| lyLysValLysAlaPheValLysValAlaAsnLysAsnGluIleLysIleIleGln 1062756 : GAAAAGTAAAGGCGTTTGTAAAAGTGGCAAACAAGAACGAGATTAAGATAATACAA : 1062703 122 : GlyTyrIleAsnArgTyrLysLysPhePheSerThrValSerMetGlyTyrIleLe : 140 ||||||:!::!!|||||||||::!||||||.!!|||:!!:!!|||||||||:!!:! GlyTyrValAspArgTyrLysArgPhePheGlyThrIleAlaMetGlyTyrValMe 1062702 : GGATACGTGGATCGATATAAACGATTTTTCGGAACAATAGCAATGGGATACGTAAT : 1062646 141 : uProAlaSerSerPheIleLeuThrProLeuLeuSerAspLysGluLeuProThrG : 159 ! !!!.!! !!!!|||! !|||.!!||||||!!!|||! :!!|||||||||.!!! tThrGlyIleThrPheSerLeuAlaProLeuPheSerValGlnGluLeuProAlaA 1062645 : GACTGGAATCACGTTCAGTTTGGCGCCTCTGTTTTCCGTACAAGAATTGCCAGCAG : 1062589 160 : luGlyTrpLeuProPheSerIleGluProLeuGlyIleTyrCysAlaValTyrVal : 177 !:||||||:!!||||||||||||:!!|||||||||:!!|||||| !|||||| !! spGlyTrpIleProPheSerIleLysProLeuGlyValTyrCysLeuValTyrPhe 1062588 : ACGGATGGATCCCGTTTTCCATTAAACCACTGGGAGTATATTGCCTCGTATACTTT : 1062535 178 : AsnHisValTyrCysIleLeuGlnThrLeuSerPheCysIlePheValAspPheTh : 196 !!.||||||||||||||||||||| :!!||||||||| !|||||||||! ValGlnValTyrCysIleLeuGlnThr---AlaPheCysIleSerValAspPheMe 1062534 : GTGCAGGTTTACTGCATTCTCCAAACA---GCGTTCTGCATTAGCGTGGATTTCAT : 1062481 197 : rIleValIleLeuPheSerPheProAlaAlaLysLeuAspValLeuGlySerLysL : 215 !|||!.!:!!|||.!!|||||| !!|||||||||||||||:!!||||||! !|||| tIleAlaLeuLeuIleSerPheSerAlaAlaLysLeuAspIleLeuGlyMetLysL 1062480 : GATCGCTCTTCTAATCAGCTTCTCCGCGGCTAAATTAGACATACTGGGGATGAAAC : 1062424 216 : euGlnAsnValAsnAsnTyrAspMetLeuValSerCysIleLysGluHisGlnLys : 233 ||!:!!!.!.!|||..!:!!|||:!!||||||||||||:!!||||||||||||:!! euArgLysAlaAsnGlyHisAspValLeuValSerCysValLysGluHisGlnGlu 1062423 : TGCGAAAAGCGAATGGCCACGACGTGCTGGTAAGCTGTGTCAAAGAACACCAAGAG : 1062370 234 : IleLeu{Gl} >>>> Target Intron 2 >>>> {y}PheValGluAsnSe : 241 |||:!!{||} 263 bp {|}|||||||||:!!! IleIle{Gl}++ ++{y}PheValGluAspIl 1062369 : ATAATA{GG}gt.........................ag{A}TTTGTGGAGGATAT : 1062083 242 : rAsnAlaThrValGluThrLeuIlePheLysThrAsnIleThrMetGlySerIleV : 260 !!!..!!:!!||||||||||||:::|||||||||||| !|||||||||||| !| eLysThrSerValGluThrLeuLeuPheLysThrAsnAlaThrMetGlySerAlaV 1062082 : TAAGACATCTGTCGAgactttgttattcaaaacgaACGCCACTATGGGAAGCGCTG : 1062026 261 : alIleCysGlyAlaPheProLeuLeuAsn >>>> Target Intron 3 >>>> : 270 |||||||||||.!!|||||||||:!! !! 132 bp alIleCysGlyThrPheProLeuIleTyr++ 1062025 : TGATATGCGGAACGTTCCCGTTGATTTACgt......................... : 1061994 271 : AsnGlnSerLeuAspValValThrGlnPheLeuProLeuIleLeuThrGlyMet : 287 |||||||||||| |||:!!!:!|||||||||||||||!!:|||:!!||| ++AsnGlnSerLeuThrValIleSerGlnPheLeuProLeuMetLeuSerGlyCys 1061993 : agAATCAGTCGCTGACAGTAATCAGTCAGTTTCTTCCTTTGATGCTATCCGGCTGC : 1061813 288 : LeuHisLeuPheValIleAlaTrpProAlaAspAspLeuArgGluSerSerIleGl : 306 !!..|||!:!||||||:!!||||||||||||||||||!:!|||||| !! !!: GlyArgLeuTyrValIleSerTrpProAlaAspAspLeuLysGluSerValSerAr 1061812 : GGACGACTATACGTCATCTCCTGGCCAGCAGATGATTTGAAAGAGAGCGTAAGCCG : 1061756 307 : nPhe : 307 !||| gPhe 1061755 : GTTC : 1061751 vulgar: AmOr145 0 307 . KQ414618.1 1063143 1061750 - 933 M 99 297 5 0 2 I 0 76 3 0 2 M 87 261 G 1 0 M 48 144 S 0 2 5 0 2 I 0 259 3 0 2 S 1 1 M 33 99 5 0 2 I 0 128 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1061751 1063143 933 - . gene_id 1 ; sequence AmOr145 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1062847 1063143 . - . KQ414618.1 exonerate:protein2genome:local exon 1062847 1063143 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1062845 1062846 . - . intron_id 1 ; splice_site "gt" KQ414618.1 exonerate:protein2genome:local intron 1062767 1062846 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1062767 1062768 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1062360 1062766 . - . KQ414618.1 exonerate:protein2genome:local exon 1062360 1062766 . - . insertions 0 ; deletions 1 KQ414618.1 exonerate:protein2genome:local splice5 1062358 1062359 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1062097 1062359 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1062097 1062098 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1061997 1062096 . - . KQ414618.1 exonerate:protein2genome:local exon 1061997 1062096 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1061995 1061996 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1061865 1061996 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1061865 1061866 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1061751 1061864 . - . KQ414618.1 exonerate:protein2genome:local exon 1061751 1061864 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1061751 1063143 933 - . alignment_id 1 ; Query AmOr145 ; Align 1063144 1 297 ; Align 1062767 100 261 ; Align 1062506 188 144 ; Align 1062096 237 99 ; Align 1061865 270 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr145 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 219 Query range: 13 -> 231 Target range: 1029981 -> 1028780 14 : IleLeuGluLeuThrGlyThrPheThrCysAlaTrpProIleAsnProAsnAspSe : 32 :!!:!!:!!:!!! ! !.!!|||||||||..!||||||:!! ! !!!..! !! LeuValGlnValIleThrAlaPheThrCysCysTrpProLeuProSerThrAlaTh 1029981 : CTTGTCCAAGTTATCACAGCTTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGAC : 1029927 33 : rLysThrTyrIleIleIleArgAsnIleLeuTrpIlePheThrIleLeuAsnValI : 51 !|||:!! :!::!! ! !!!.|||||| ! !||| !:!!||||||!.!: rLysSerLeuValLeuGlnPheLysIleLeuArgSerPheLeuLeuLeuAsnAlaL 1029926 : TAAGTCTCTGGTGCTTCAATTTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGT : 1029870 52 : lePheLeuAlaIleSerMetIlePheAlaIlePheHisPheArgSerAspIlePro : 69 !! ! ||| !:!! !!:!!:!!!:!|||:!: ! !|||!:!||| ! ! euValLeuPheLeuProLeuLeuTyrAlaLeuHisValHisArgAsnAspAlaGlu 1029869 : TAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTGCATCGAAACGACGCCGAG : 1029816 70 : LysSerMetLysThrAlaSerGluMetAlaAlaLeuLeuGluValAlaLeuAspLe : 88 !!. ! !|||.!!|||!!! !! ! !||||||::::::::: ...... AsnValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGlnIlePhePheGlnTh 1029815 : AACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCctcgtgcaaatatttttccagac : 1029759 89 : uAlaLeuPheLysTrpAsnAsnSerGluLeuGln >>>> Target Intron 1 : 100 ! !:!!! !! ! .!. !!..!.!.!!!||| 550 bp rPheValCysIleGlyGlnTyrAspHisPheGln++ 1029758 : TTTCGTTTGCATCGGCCAATACGATCATTTTCAGgt.................... : 1029721 101 : >>>> IleLeuIleGluGluValLysSerPheLeuGluIleAlaAspGluTyrG : 116 ! !||||||||||||:!!|||! !! !! !|||! !||| ! !|||| ++LysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrG 1029720 : .....agAAACTAATCGAAGAAATGAAGATTTGCTGTGAAACAGCGAAACCATACG : 1029125 117 : luIleLysIleLeuGlnGlyTyrIleAsnArgTyrLysLysPhePheSerThrVal : 134 ||! ! ! :!!!!!||| !!|||:!!:!!!:!|||... !|||!:! !||| ! luArgAspValPheGlnArgTyrValAspLysTyrSerLeuPheTyrValThrCys 1029124 : AAAGAGACGTCTTTCAACGATACGTCGATAAATACTCTTTATTTTACGTAACATGT : 1029071 135 : SerMetGlyTyrIleLeuProAlaSerSerPheIleLeuThrProLeuLeuSerAs : 153 ||| ! !!!:! !||| !!||| !! !.!.:!!||| ! !! !:!!! !.. SerSerTrpPheTyrLeuThrAlaValIleMetValLeuGlySerArgIleIleSe 1029070 : TCGTCGTGGTTTTACTTAACAGCAGTTATTATGGTTCTGGGAAGTCGGATTATATC : 1029014 154 : pLysGluLeuProThrGluGlyTrpLeuProPheSerIleGluProLeuGlyIleT : 172 ! ! !!!||||||.!.!.! ! !|||||| !!:!!.!. ! ! !:!: rAspProPheProThrAsnAlaValTyrProPheProValAsnPheGluProLeuA 1029013 : TGATCCTTTTCCAACCAACGCCGTATATCCATTCCCTGTTAACTTTGAACCCTTGA : 1028957 173 : yrCysAlaValTyrValAsnHisValTyrCysIleLeuGlnThrLeuSerPheCys : 190 !! !:!!!:!:!!:!!!!. !!:! ! !:!!||| ! !:!! ! ! rgSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisThr 1028956 : GAAGTATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACACT : 1028903 191 : IlePheValAspPheThrIleValIleLeuPheSerPheProAlaAlaLysLeuAs : 209 ! !.!. !! .!.||| !:!!:!!|||.!. ||| !!||||||:::!!!!! SerMetAsnValLeuThrAlaLeuLeuLeuLeu---PheAlaAlaAlaArgPheGl 1028902 : AGTATGAATGTGCTAACTGCATTGTTATTACTA---TTTGCTGCAGCTCGTTTCGA : 1028849 210 : pValLeuGlySerLysLeuGlnAsnValAsnAsnTyrAspMetLeuValSerCysI : 228 ::!!||| !! !:!!|||::!||||||!:!:!! !!!:! |||:!!!.!|||! uIleLeuMetMetGluLeuArgAsnValSerAspIleGluThrLeuIleLysCysM 1028848 : GATACTGATGATGGAGCTGAGGAATGTCAGTGACATTGAAACACTGATTAAATGTA : 1028792 229 : leLysGluHis : 231 !:|||:!!:!! etLysLysTyr 1028791 : TGAAAAAGTAT : 1028781 vulgar: AmOr145 13 231 . KQ414618.1 1029981 1028780 - 219 M 86 258 5 0 2 I 0 546 3 0 2 M 102 306 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028781 1029981 219 - . gene_id 2 ; sequence AmOr145 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1029724 1029981 . - . KQ414618.1 exonerate:protein2genome:local exon 1029724 1029981 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1029722 1029723 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1029174 1029723 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1029174 1029175 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028781 1029173 . - . KQ414618.1 exonerate:protein2genome:local exon 1028781 1029173 . - . insertions 0 ; deletions 1 KQ414618.1 exonerate:protein2genome:local similarity 1028781 1029981 219 - . alignment_id 2 ; Query AmOr145 ; Align 1029982 14 258 ; Align 1029174 100 306 ; Align 1028868 203 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr145 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 149 Query range: 97 -> 234 Target range: 1038346 -> 1037938 98 : LeuGlnIleLeuIleGluGluValLysSerPheLeuGluIleAlaAspGluTyrGl : 116 ||||||! !||||||||||||:!!|||! !! !! !|||! !||| ! !||||| LeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGl 1038346 : TTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGA : 1038292 117 : uIleLysIleLeuGlnGlyTyrIleAsnArgTyrLysLysPhePheSerThrValS : 135 |! ! ! :!!!!!||| !!|||:!!|||!:!:!:... |||::: ||| !| uArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysS 1038291 : AAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTT : 1038235 136 : erMetGlyTyrIleLeuProAlaSerSerPheIleLeuThrProLeuLeuSerAsp : 153 || !!!:! !||| !!|||! !! !.!.:!!||| ! !||||||! !..! erSerTrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSer 1038234 : CGTCATGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCC : 1038181 154 : LysGluLeuProThrGluGlyTrpLeuProPheSerIleGluProLeuGlyIleTy : 172 ! !!!||||||.!.!.! ! !|||||| !!:!!.!. ! ! !:!: AspProPheProThrAsnAlaValTyrProPheProValAsnPheGluProLeuAr 1038180 : GATCCTTTTCCAACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAG : 1038124 173 : rCysAlaValTyrValAsnHisValTyrCysIleLeuGlnThrLeuSerPheCysI : 191 !! !:!!!:!:!!:!!!!. !!:! ! !:!!||| ! !:!! !..! gSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisAla- 1038123 : AAGCATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCT- : 1038067 192 : lePheValAspPheThrIleValIleLeuPheSerPheProAlaAlaLysLeuAsp : 209 !:!!:!! ! ! !!.!:!:|||!!. !||| !!.!!|||:::...::: --SerMetAsnValLeuSerAlaLeuLeuLeuLeuPheThrThrAlaArgPheGlu 1038066 : --AGTATGAATGTGCTTTCTGCACTGTTATTGCTATTCACTACAGCtcgtttcgaa : 1038016 210 : ValLeuGlySerLysLeuGlnAsnValAsnAsnTyrAspMetLeuValSerCysIl : 228 :::||| !!!!:!!|||::!|||||||||:!! !!!:! |||:!!!.! !!!! IleLeuMetThrGluLeuArgAsnValAsnAspIleGluThrLeuIleLysSerMe 1038015 : atattgaTGACGGAGTTGAGGAATGTCAATGATATCGAAACACTGATTAAGAGTAT : 1037959 229 : eLysGluHisGlnLysIle : 234 :|||:!!:!!..!! :!: tLysLysTyrSerThrVal 1037958 : GAAAAAGTATTCGACTGTG : 1037939 vulgar: AmOr145 97 234 . KQ414618.1 1038346 1037938 - 149 M 93 279 G 1 0 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037939 1038346 149 - . gene_id 3 ; sequence AmOr145 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1037939 1038346 . - . KQ414618.1 exonerate:protein2genome:local exon 1037939 1038346 . - . insertions 0 ; deletions 1 KQ414618.1 exonerate:protein2genome:local similarity 1037939 1038346 149 - . alignment_id 3 ; Query AmOr145 ; Align 1038347 98 279 ; Align 1038068 192 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr143 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1022 Query range: 1 -> 301 Target range: 1063125 -> 1061750 2 : AsnIleArgGlnIleLeuTyrIleLeuGluLeuIleGlyThrPheThrCysThrTr : 20 ||||||!.!!:!:!!|||:!!|||||||||||| !|||! !|||||||||||||| AsnIleHisArgValLeuHisIleLeuGluLeuAlaGlyArgPheThrCysThrTr 1063125 : AACATTCATCGAGTACTTCATATACTAGAATTGGCTGGAAGGTTCACGTGTACCTG : 1063071 21 : pProIleAsnProAsnIleSerLysArgArgIleIlePheArgAsnIlePheTrpI : 39 ||||:!!:!! !!|||! !|||||||||..!:!!:!!|||||||||:!! ||| pProLeuAspSerAsnSerSerLysArgGluValValPheArgAsnValArgTrpG 1063070 : GCCGTTAGATTCTAACAGCAGTAAAAGAGAAGTTGTCTTTCGTAACGTTCGATGGG : 1063014 40 : lePheSerIleLeuAsnValIleLeuLeuMetThrSerLeuMetLeuAlaValVal : 57 !|||!!!|||||||||||||||||||||:!!! !||||||!!:||||||::: lyPheThrIleLeuAsnValIleLeuLeuLeuIleSerLeuIleLeuAlaIlePhe 1063013 : GTTTCACGATACTAAACGTGATATTACTACTGATATCCTTGATACTcgcgattttt : 1062960 58 : TyrPheArgAsnAspIleLeuMetSerLeuLysThrAlaSerGluMetAlaAlaLe : 76 :::||||||||||||||| ::: :::|||||| !|||||||||.!!||||| HisPheArgAsnAspIleThrIleLeuMetLysThrIleSerGluMetThrAlaLe 1062959 : cactttcgaaaCGACATaactattttaatgaaaaccaTCTCCGAGATGACTGCTCT : 1062903 77 : uLeuGluValValLeuAspLeuIleLeuCysLysTrpAsnAsnSerGluPheGln : 95 ||||||||||:!!:!!|||:!!|||||||||||| !!!.!:!:!!:!!.!!||| uLeuGluValLeuMetAspMetIleLeuCysLysMetLysSerAlaGlnLeuGln+ 1062902 : GCTGGAGGTGTTGATGGACATGATTCTCTGCAAAATGAAGAGTGCACAGCTTCAgg : 1062846 96 : >>>> Target Intron 1 >>>> ValLeuIleGluGluValLysSerPheV : 104 80 bp ||||||:!!! !:!!||||||:!!|||| + ++ValLeuValGlyLysValLysAlaPheV 1062845 : t.........................agGTGTTGGTAGGAAAAGTAAAGGCGTTTG : 1062739 105 : alGluMetAlaAsnGluTyrGluIleLysIleLeuGlnGlyTyrValAsnArgTyr : 122 ||:!!:!!||||||:!! !!||||||||||||:!!||||||||||||:!!|||||| alLysValAlaAsnLysAsnGluIleLysIleIleGlnGlyTyrValAspArgTyr 1062738 : TAAAAGTGGCAAACAAGAACGAGATTAAGATAATACAAGGATACGTGGATCGATAT : 1062685 123 : LysLysPhePheSerThrValSerMetGlyTyrIleSerThrAlaIleSerPheSe : 141 |||::!||||||.!!|||:!!:!!|||||||||:!!! !|||!.!|||!!!||||| LysArgPhePheGlyThrIleAlaMetGlyTyrValMetThrGlyIleThrPheSe 1062684 : AAACGATTTTTCGGAACAATAGCAATGGGATACGTAATGACTGGAATCACGTTCAG : 1062628 142 : rLeuMetProLeuPheSerAlaGlnLysLeuProAlaAspGlyTrpLeuProPheS : 160 |||| !||||||||||||!.!|||:!!||||||||||||||||||:!!||||||| rLeuAlaProLeuPheSerValGlnGluLeuProAlaAspGlyTrpIleProPheS 1062627 : TTTGGCGCCTCTGTTTTCCGTACAAGAATTGCCAGCAGACGGATGGATCCCGTTTT : 1062571 161 : erThrGluProPheGlyIleTyrCysIleIleTyrPheAsnHisValTyrCysIle : 178 ||! !:!!|||.!.|||:!!||||||:!!:!!|||||| !!.|||||||||||| erIleLysProLeuGlyValTyrCysLeuValTyrPheValGlnValTyrCysIle 1062570 : CCATTAAACCACTGGGAGTATATTGCCTCGTATACTTTGTGCAGGTTTACTGCATT : 1062517 179 : LeuGlnThrAlaPheCysIlePheValAspPheThrIleValIleLeuPheSerPh : 197 ||||||||||||||||||||| !|||||||||! !|||!.!:!!|||.!!||||| LeuGlnThrAlaPheCysIleSerValAspPheMetIleAlaLeuLeuIleSerPh 1062516 : CTCCAAACAGCGTTCTGCATTAGCGTGGATTTCATGATCGCTCTTCTAATCAGCTT : 1062460 198 : eProAlaAlaLysLeuAspValLeuArgSerLysLeuArgHisValAsnAsnTyrA : 216 | !!|||||||||||||||:!!||| !!! !||||||||| ! !.!|||..!:!!| eSerAlaAlaLysLeuAspIleLeuGlyMetLysLeuArgLysAlaAsnGlyHisA 1062459 : CTCCGCGGCTAAATTAGACATACTGGGGATGAAACTGCGAAAAGCGAATGGCCACG : 1062403 217 : spThrLeuValSerCysIleLysGluHisGlnLysIleIle{Gl} >>>> Targ : 230 ||..!||||||||||||:!!||||||||||||:!!||||||{||} spValLeuValSerCysValLysGluHisGlnGluIleIle{Gl}++ 1062402 : ACGTGCTGGTAAGCTGTGTCAAAGAACACCAAGAGATAATA{GG}gt......... : 1062357 231 : et Intron 2 >>>> {y}PheValGluAspThrLysAlaThrValGluThrLe : 242 263 bp {|}||||||||||||! !|||.!!:!!||||||||||| ++{y}PheValGluAspIleLysThrSerValGluThrLe 1062356 : ................ag{A}TTTGTGGAGGATATTAAGACATCTGTCGAgacttt : 1062062 243 : uLeuPheLysThrAsnValThrMetGlySerThrValMetCysGlyAlaPheProL : 261 ||||||||||||||||!.!||||||||||||.!!|||!!:||||||.!!||||||| uLeuPheLysThrAsnAlaThrMetGlySerAlaValIleCysGlyThrPheProL 1062061 : gttattcaaaacgaACGCCACTATGGGAAGCGCTGTGATATGCGGAACGTTCCCGT : 1062005 262 : euLeuAsn >>>> Target Intron 3 >>>> AsnGlnSerLeuAlaAlaI : 270 ||:!! !! 132 bp ||||||||||||.!!!.!| euIleTyr++ ++AsnGlnSerLeuThrValI 1062004 : TGATTTACgt.........................agAATCAGTCGCTGACAGTAA : 1061846 271 : leSerGlnPheLeuProLeuValLeuSerGlyIleLeuHisLeuTyrValIleAla : 288 ||||||||||||||||||||:!!||||||||| ! !!..||||||||||||:!! leSerGlnPheLeuProLeuMetLeuSerGlyCysGlyArgLeuTyrValIleSer 1061845 : TCAGTCAGTTTCTTCCTTTGATGCTATCCGGCTGCGGACGACTATACGTCATCTCC : 1061792 289 : TrpProAlaAspAspLeuArgGluSerSerValGlnPhe : 301 ||||||||||||||||||!:!|||||| ! !!:!||| TrpProAlaAspAspLeuLysGluSerValSerArgPhe 1061791 : TGGCCAGCAGATGATTTGAAAGAGAGCGTAAGCCGGTTC : 1061751 vulgar: AmOr143 1 301 . KQ414618.1 1063125 1061750 - 1022 M 93 279 5 0 2 I 0 76 3 0 2 M 135 405 S 0 2 5 0 2 I 0 259 3 0 2 S 1 1 M 33 99 5 0 2 I 0 128 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1061751 1063125 1022 - . gene_id 1 ; sequence AmOr143 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1062847 1063125 . - . KQ414618.1 exonerate:protein2genome:local exon 1062847 1063125 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1062845 1062846 . - . intron_id 1 ; splice_site "gt" KQ414618.1 exonerate:protein2genome:local intron 1062767 1062846 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1062767 1062768 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1062360 1062766 . - . KQ414618.1 exonerate:protein2genome:local exon 1062360 1062766 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1062358 1062359 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1062097 1062359 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1062097 1062098 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1061997 1062096 . - . KQ414618.1 exonerate:protein2genome:local exon 1061997 1062096 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1061995 1061996 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1061865 1061996 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1061865 1061866 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1061751 1061864 . - . KQ414618.1 exonerate:protein2genome:local exon 1061751 1061864 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1061751 1063125 1022 - . alignment_id 1 ; Query AmOr143 ; Align 1063126 2 279 ; Align 1062767 95 405 ; Align 1062096 231 99 ; Align 1061865 264 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr143 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 168 Query range: 92 -> 228 Target range: 1038346 -> 1037938 93 : PheGlnValLeuIleGluGluValLysSerPheValGluMetAlaAsnGluTyrGl : 111 !!.||| !||||||||||||:!!|||! !! ! !|||! |||!!. !||||| LeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGl 1038346 : TTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGA : 1038292 112 : uIleLysIleLeuGlnGlyTyrValAsnArgTyrLysLysPhePheSerThrValS : 130 |! ! ! :!!!!!||| !!|||||||||!:!:!:... |||::: ||| !| uArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysS 1038291 : AAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTT : 1038235 131 : erMetGlyTyrIleSerThrAlaIleSerPheSerLeuMetProLeuPheSerAla : 148 || !!!:! !! !|||||||||! !.!. !||| !|||.!!! !:!! erSerTrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSer 1038234 : CGTCATGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCC : 1038181 149 : GlnLysLeuProAlaAspGlyTrpLeuProPheSerThrGluProPheGlyIleTy : 167 .!. !!!|||.!!:!!!.! ! !|||||| !!..!.!. ! !:!: AspProPheProThrAsnAlaValTyrProPheProValAsnPheGluProLeuAr 1038180 : GATCCTTTTCCAACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAG : 1038124 168 : rCysIleIleTyrPheAsnHisValTyrCysIleLeuGlnThrAlaPheCysIleP : 186 !!||||||!:!.!.:!!!!. !!:! ! !:!!||| !||| ! ! gSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisAlaS 1038123 : AAGCATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTA : 1038067 187 : heValAspPheThrIleValIleLeuPheSerPheProAlaAlaLysLeuAspVal : 204 !:!!:!! ! ! !!.!:!:|||!!. !||| !!.!!|||:::...:::::: erMetAsnValLeuSerAlaLeuLeuLeuLeuPheThrThrAlaArgPheGluIle 1038066 : GTATGAATGTGCTTTCTGCACTGTTATTGCTATTCACTACAGCtcgtttcgaaata : 1038013 205 : LeuArgSerLysLeuArgHisValAsnAsnTyrAspThrLeuValSerCysIleLy : 223 ||| !!!!:!!||||||:!!||||||:!! !!!:||||||:!!!.! !!!!:|| LeuMetThrGluLeuArgAsnValAsnAspIleGluThrLeuIleLysSerMetLy 1038012 : ttgaTGACGGAGTTGAGGAATGTCAATGATATCGAAACACTGATTAAGAGTATGAA : 1037956 224 : sGluHisGlnLysIle : 228 |:!!:!!..!! :!: sLysTyrSerThrVal 1037955 : AAAGTATTCGACTGTG : 1037939 vulgar: AmOr143 92 228 . KQ414618.1 1038346 1037938 - 168 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037939 1038346 168 - . gene_id 2 ; sequence AmOr143 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1037939 1038346 . - . KQ414618.1 exonerate:protein2genome:local exon 1037939 1038346 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037939 1038346 168 - . alignment_id 2 ; Query AmOr143 ; Align 1038347 93 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr143 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 167 Query range: 92 -> 225 Target range: 1029179 -> 1028780 93 : PheGlnValLeuIleGluGluValLysSerPheValGluMetAlaAsnGluTyrGl : 111 !!.||| !||||||||||||:!!|||! !! ! !|||! |||!!. !||||| LeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGl 1029179 : TTGCAGAAACTAATCGAAGAAATGAAGATTTGCTGTGAAACAGCGAAACCATACGA : 1029125 112 : uIleLysIleLeuGlnGlyTyrValAsnArgTyrLysLysPhePheSerThrValS : 130 |! ! ! :!!!!!||| !!||||||:!!!:!|||... !|||!:! !||| !| uArgAspValPheGlnArgTyrValAspLysTyrSerLeuPheTyrValThrCysS 1029124 : AAGAGACGTCTTTCAACGATACGTCGATAAATACTCTTTATTTTACGTAACATGTT : 1029068 131 : erMetGlyTyrIleSerThrAlaIleSerPheSerLeuMetProLeuPheSerAla : 148 || ! !!!:! !! !||||||:!!! !.!. !||| !! !.!!! !:!! erSerTrpPheTyrLeuThrAlaValIleMetValLeuGlySerArgIleIleSer 1029067 : CGTCGTGGTTTTACTTAACAGCAGTTATTATGGTTCTGGGAAGTCGGATTATATCT : 1029014 149 : GlnLysLeuProAlaAspGlyTrpLeuProPheSerThrGluProPheGlyIleTy : 167 .!. !!!|||.!!:!!!.! ! !|||||| !!..!.!. ! !:!: AspProPheProThrAsnAlaValTyrProPheProValAsnPheGluProLeuAr 1029013 : GATCCTTTTCCAACCAACGCCGTATATCCATTCCCTGTTAACTTTGAACCCTTGAG : 1028957 168 : rCysIleIleTyrPheAsnHisValTyrCysIleLeuGlnThrAlaPheCysIleP : 186 !!||||||!:!.!.:!!!!. !!:! ! !:!!||| !||| !! ! gSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisThrS 1028956 : AAGTATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACACTA : 1028900 187 : heValAspPheThrIleValIleLeuPheSerPheProAlaAlaLysLeuAspVal : 204 !:!!:!! ! !! !!.!:!:|||!!. !||| !!||||||:::!!!!!::!! erMetAsnValLeuThrAlaLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIle 1028899 : GTATGAATGTGCTAACTGCATTGTTATTACTATTTGCTGCAGCTCGTTTCGAGATA : 1028846 205 : LeuArgSerLysLeuArgHisValAsnAsnTyrAspThrLeuValSerCysIleLy : 223 |||! !! !:!!||||||:!!|||!:!:!! !!!:||||||:!!!.!|||!!:|| LeuMetMetGluLeuArgAsnValSerAspIleGluThrLeuIleLysCysMetLy 1028845 : CTGATGATGGAGCTGAGGAATGTCAGTGACATTGAAACACTGATTAAATGTATGAA : 1028789 224 : sGluHis : 225 |:!!:!! sLysTyr 1028788 : AAAGTAT : 1028781 vulgar: AmOr143 92 225 . KQ414618.1 1029179 1028780 - 167 M 133 399 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028781 1029179 167 - . gene_id 3 ; sequence AmOr143 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028781 1029179 . - . KQ414618.1 exonerate:protein2genome:local exon 1028781 1029179 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028781 1029179 167 - . alignment_id 3 ; Query AmOr143 ; Align 1029180 93 399 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr146 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 703 Query range: 0 -> 234 Target range: 1030017 -> 1028765 1 : MetPheArgAsnAlaThrProGluLysAlaIleAlaPheThrGlnPheIleValSe : 19 |||!!.!:! !! !!!:!||||||!:!||||||:!!.!!..!||| !!|||..!:! MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1030017 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1029963 20 : rLeuSerCysCysTrpProLeuProSerThrAlaThrLysLeuGlnThrArgCysP : 38 !!!!!!!|||||||||||||||||||||||||||||||||! !! !..!! ! | aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1029962 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1029906 39 : heLysIleIleArgSerLeuLeuPheLeuAsnSerLeuLeuLeuPhePheProLeu : 56 ||||||||:!:||||||!!!|||.!!||||||:!!|||:!!||||||.!.|||||| heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1029905 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1029852 57 : LeuTyrPheValTyrValAsnArgAsnAspAsnThrThrPheCysLysAlaMetSe : 75 |||||| !:!!:!!|||:!!||||||||| ! !!.! !!...|||||| !! LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1029851 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1029795 76 : rLeuSerLeuAlaValValGlnValProLeuLeuSerSerPheCysIleThrGlnT : 94 !|||!!!||||||:::||||||::: ... ::!! ! !!|||||| !|||| sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1029794 : CCTGACGCTTGCCctcgtgcaaatatttttccagacTTTCGTTTGCATCGGCCAAT : 1029738 95 : yrAspArgPheGln >>>> Target Intron 1 >>>> ArgLeuIleLysG : 103 |||||!.!|||||| 550 bp !:!||||||:!!| yrAspHisPheGln++ ++LysLeuIleGluG 1029737 : ACGATCATTTTCAGgt.........................agAAACTAATCGAAG : 1029161 104 : luMetLysPheCysCysGluAsnAlaAsnSerTyrGluArgGlnValPheGlnGly : 121 ||||||||.!!|||||||||!..|||!!. !!|||||||||.!.||||||||| !! luMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheGlnArg 1029160 : AAATGAAGATTTGCTGTGAAACAGCGAAACCATACGAAAGAGACGTCTTTCAACGA : 1029107 122 : TyrAlaLysSerTyrAlaThrPheTyrGlyValSerAlaIleTrpPheTyrTrpCy : 140 |||!.! ! !.!|||:!! !||||||! !..!!!!:!! |||||||||! TyrValAspLysTyrSerLeuPheTyrValThrCysSerSerTrpPheTyrLeuTh 1029106 : TACGTCGATAAATACTCTTTATTTTACGTAACATGTTCGTCGTGGTTTTACTTAAC : 1029050 141 : sAlaLeuIleValValValGlyThrLeuPheIleSerAspProPheProThrAsnA : 159 |||:!!|||:!!|||:!!|||!:!! !.!!||||||||||||||||||||||||| rAlaValIleMetValLeuGlySerArgIleIleSerAspProPheProThrAsnA 1029049 : AGCAGTTATTATGGTTCTGGGAAGTCGGATTATATCTGATCCTTTTCCAACCAACG : 1028993 160 : laGluTyrProPheProValHisPheGluProValArgSerIleValPheValGln : 177 ||! !|||||||||||||||:!!|||||||||:!!|||||||||:!!|||:!!!!. laValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHis 1028992 : CCGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGTATCATTTTTATGCAC : 1028939 178 : GlnAlaLeuValGlyPheGlnCysSerAlaHisLeuCysValAsnIlePheCysAl : 196 |||:!!!!!||||||.!.||||||:!!|||||| ! !!:!!|||:!:.!. !|| GlnSerPheValGlyIleGlnCysAlaAlaHisThrSerMetAsnValLeuThrAl 1028938 : CAATCGTTCGTTGGCATACAGTGTGCTGCACACACTAGTATGAATGTGCTAACTGC : 1028882 197 : aLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuMetAsnGluLeuArgA : 215 |||||||||||||||||||||||||||||||||||||||||||! ||||||||| aLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuMetMetGluLeuArgA 1028881 : ATTGTTATTACTATTTGCTGCAGCTCGTTTCGAGATACTGATGATGGAGCTGAGGA : 1028825 216 : laValGluAsnIleGluSerLeuIleLysCysIleGluLysTyrTyrAlaIleArg : 233 !|||...:!!||||||!!!||||||||||||!!::!!||||||! !:!!||| snValSerAspIleGluThrLeuIleLysCysMetLysLysTyrSerIleValArg 1028824 : ATGTCAGTGACATTGAAACACTGATTAAATGTATGAAAAAGTATTCGATCGTACGG : 1028771 234 : Arg : 234 ||| Arg 1028770 : AGG : 1028766 vulgar: AmOr146 0 234 . KQ414618.1 1030017 1028765 - 703 M 98 294 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028766 1030017 703 - . gene_id 1 ; sequence AmOr146 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1029724 1030017 . - . KQ414618.1 exonerate:protein2genome:local exon 1029724 1030017 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1029722 1029723 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1029174 1029723 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1029174 1029175 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028766 1029173 . - . KQ414618.1 exonerate:protein2genome:local exon 1028766 1029173 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028766 1030017 703 - . alignment_id 1 ; Query AmOr146 ; Align 1030018 1 294 ; Align 1029174 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr146 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 690 Query range: 0 -> 234 Target range: 1039184 -> 1037932 1 : MetPheArgAsnAlaThrProGluLysAlaIleAlaPheThrGlnPheIleValSe : 19 |||!!.!:! !! !!!:!||||||!:!||||||:!!.!!..!||| !!|||..!:! MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1039184 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1039130 20 : rLeuSerCysCysTrpProLeuProSerThrAlaThrLysLeuGlnThrArgCysP : 38 !!!!!!!|||||||||||||||||||||||||||||||||! !! !..!! ! | aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1039129 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1039073 39 : heLysIleIleArgSerLeuLeuPheLeuAsnSerLeuLeuLeuPhePheProLeu : 56 ||||||||:!:||||||!!!|||.!!||||||:!!|||:!!||||||.!.|||||| heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1039072 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1039019 57 : LeuTyrPheValTyrValAsnArgAsnAspAsnThrThrPheCysLysAlaMetSe : 75 |||||| !:!!:!!|||:!!||||||||| ! !!.! !!...|||||| !! LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1039018 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1038962 76 : rLeuSerLeuAlaValValGlnValProLeuLeuSerSerPheCysIleThrGlnT : 94 !|||!!!||||||:::||||||::: ... ::: |||||| !|||| sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1038961 : CCTGACGCTTGCTctcgtgcaaatatttttccaaactttcgttTGCATCGGTCAAT : 1038905 95 : yrAspArgPheGln >>>> Target Intron 1 >>>> ArgLeuIleLysG : 103 |||||!.!|||||| 550 bp !:!||||||:!!| yrAspHisPheGln++ ++LysLeuIleGluG 1038904 : ACGATCATTTTCAGgt.........................agAAACTAATCGAAG : 1038328 104 : luMetLysPheCysCysGluAsnAlaAsnSerTyrGluArgGlnValPheGlnGly : 121 ||||||||.!!|||||||||!..|||!!. !!|||||||||.!.||||||||| !! luMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheGlnArg 1038327 : AAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGACGTCTTCCAACGA : 1038274 122 : TyrAlaLysSerTyrAlaThrPheTyrGlyValSerAlaIleTrpPheTyrTrpCy : 140 |||!.!!!.!.!:!:::: |||||| ... !!:!! !|||||||||! TyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheTyrLeuTh 1038273 : TACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTTACTTAAC : 1038217 141 : sAlaLeuIleValValValGlyThrLeuPheIleSerAspProPheProThrAsnA : 159 |||:!!|||:!!|||:!!|||!:!|||.!!||||||||||||||||||||||||| rAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPheProThrAsnA 1038216 : AGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACCAACG : 1038160 160 : laGluTyrProPheProValHisPheGluProValArgSerIleValPheValGln : 177 ||! !|||||||||||||||:!!|||||||||:!!|||||||||:!!|||:!!!!. laValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHis 1038159 : CAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCAC : 1038106 178 : GlnAlaLeuValGlyPheGlnCysSerAlaHisLeuCysValAsnIlePheCysAl : 196 |||:!!!!!||||||.!.||||||:!!|||||| ! !!:!!|||:!:.!!! !|| GlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAl 1038105 : CAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGC : 1038049 197 : aLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuMetAsnGluLeuArgA : 215 ||||||||||||||||.!!.!!|||||||||||||||||||||!..||||||||| aLeuLeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgA 1038048 : ACTGTTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGA : 1037992 216 : laValGluAsnIleGluSerLeuIleLysCysIleGluLysTyrTyrAlaIleArg : 233 !|||.!.:!!||||||!!!||||||||| !!!!::!!||||||! .!!:!:||| snValAsnAspIleGluThrLeuIleLysSerMetLysLysTyrSerThrValArg 1037991 : ATGTCAATGATATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGG : 1037938 234 : Arg : 234 ||| Arg 1037937 : AGG : 1037933 vulgar: AmOr146 0 234 . KQ414618.1 1039184 1037932 - 690 M 98 294 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037933 1039184 690 - . gene_id 2 ; sequence AmOr146 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1038891 1039184 . - . KQ414618.1 exonerate:protein2genome:local exon 1038891 1039184 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1038889 1038890 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1038341 1038890 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1038341 1038342 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1037933 1038340 . - . KQ414618.1 exonerate:protein2genome:local exon 1037933 1038340 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037933 1039184 690 - . alignment_id 2 ; Query AmOr146 ; Align 1039185 1 294 ; Align 1038341 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr146 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 492 Query range: 0 -> 248 Target range: 1053857 -> 1052435 1 : MetPheArgAsnAlaThrProGluLysAlaIleAlaPheThrGlnPheIleValSe : 19 |||!!.!:!.!. !||||||||||||!.!|||! !.!!! ! !|||! !|||:! MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : rLeuSerCysCysTrpProLeuProSerThrAlaThrLysLeuGlnThrArgCysP : 38 !|||:!! !|||||||||||| !!|||:!!|||!:!||| !|||..! ...| aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 39 : heLysIleIleArgSerLeuLeuPheLeuAsnSerLeuLeuLeuPhePheProLeu : 56 ||||||||:::::: ! :!!!:!:!!|||:!!|||.!!!!.|||||| heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 57 : LeuTyrPheValTyrValAsnArgAsnAspAsnThrThrPheCysLysAlaMetSe : 75 ||||||! ..!|||:!!:!! !:!!||| !! !..!.!!! !:!!::!!!:!! LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 76 : rLeuSerLeuAlaValValGlnValProLeuLeuSerSerPheCysIleThrGlnT : 94 !||||||:!!!.!||| !!|||:!! !:!!! !!!! !.!.|||.!!|||.!.| sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCysPheThrAsnT 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGTTTCACCAACT : 1053578 95 : yrAspArgPheGln >>>> Target Intron 1 >>>> ArgLeuIleLysG : 103 |||||! !.!.||| 613 bp |||:!!|||! !| yrAspLeuLeuGln++ ++ArgIleIleThrG 1053577 : ACGACCTTCTGCAGgt.........................agCGAATAATTACAG : 1052938 104 : luMetLysPheCysCysGluAsnAlaAsnSerTyrGluArgGlnValPheGlnGly : 121 |||||! ! ! !:!!.!.|||.!...!!:!||||||:!!:!!.!!!!...! luMetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLeuHisAsn 1052937 : AAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCACAAC : 1052884 122 : TyrAlaLysSerTyrAlaThrPheTyrGlyValSerAlaIleTrpPheTyrTrpCy : 140 ||| !:!!!.!! ! ! !|||||||||! !||| !|||||| ||| || TyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrTyrLeuCy 1052883 : TATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACATACCTCTG : 1052827 141 : sAlaLeuIleValValValGlyThrLeuPheIleSerAspProPheProThrAsnA : 159 |||| ! ! !!|||:!!||| !!:!! !!:!! !!:!!|||||||||!:!!:!| sAlaThrCysPheValLeuGlyProValValLeuProAsnProPheProSerSerA 1052826 : TGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGCAGTG : 1052770 160 : laGluTyrProPheProValHisPheGluProValArgSerIleValPheValGln : 177 ||||||||||||||! !|||:!! ! !|||:!!!.!:!!||||||!:!:!!!!. laGluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyrLeuHis 1052769 : CAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTACCTGCAC : 1052716 178 : GlnAlaLeuValGlyPheGlnCysSerAlaHisLeuCysValAsnIlePheCysAl : 196 |||:!!!!!:!!.!!||||||! !|||||||||:!!||||||!:!|||||| ! || GlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePheGlyAl 1052715 : CAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTTCGGAGC : 1052659 197 : aLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuMetAsnGluLeuArgA : 215 ||||||||||! !.!!.!!||||||||||||.!. !|||! |||:!!!:! aLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluValGlnG 1052658 : TCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTTCAAC : 1052602 216 : laValGluAsnIleGluSerLeuIleLysCysIleGluLysTyrTyrAlaIleArg : 233 ! !..!!:!|||.!.! !||||||! |||:!!:!!||| ! !:!:||| lnSerSerSerIleHisMetLeuIleIleCysValLysLysGlnLeuLeuLeuArg 1052601 : AAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCTACTACTGAGG : 1052548 234 : {Ar} >>>> Target Intron 2 >>>> {g}TyrAlaGluGluValValAs : 241 {||} 65 bp {|}||||||:!!|||||||||:! {Ar}++ ++{g}TyrAlaLysGluValValAs 1052547 : {AG}gt.........................ag{G}TACGCCAAAGAAGTGGTTGA : 1052459 242 : nSerAlaArgTyrThrThrLeu : 248 !.!! !||| !! !..!||| pGlyPheArgLeuIleValLeu 1052458 : CGGTTTTCGGCTTATAGTACTC : 1052436 vulgar: AmOr146 0 248 . KQ414618.1 1053857 1052435 - 492 M 98 294 5 0 2 I 0 609 3 0 2 M 135 405 S 0 2 5 0 2 I 0 61 3 0 2 S 1 1 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1052436 1053857 492 - . gene_id 3 ; sequence AmOr146 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1053564 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053564 1053857 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1053562 1053563 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052951 1053563 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052951 1052952 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052544 1052950 . - . KQ414618.1 exonerate:protein2genome:local exon 1052544 1052950 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052542 1052543 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052479 1052543 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1052479 1052480 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052436 1052478 . - . KQ414618.1 exonerate:protein2genome:local exon 1052436 1052478 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1052436 1053857 492 - . alignment_id 3 ; Query AmOr146 ; Align 1053858 1 294 ; Align 1052951 99 405 ; Align 1052478 235 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr146 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 395 Query range: 0 -> 234 Target range: 1058517 -> 1057732 1 : MetPheArgAsnAlaThrProGluLysAlaIleAlaPheThrGlnPheIleValSe : 19 ||| !:!!:! !|||||||||:!!||||||:!!||||||:!!.!.! !|||:! MetArgLysSerIleThrProGluGlnAlaIleSerPheThrLysLeuSerValAl 1058517 : ATGAGGAAAAGTATAACGCCGGAACAAGCGATCTCGTTCACGAAACTGAGCGTCGC : 1058463 20 : rLeuSerCysCysTrpProLeuProSerThrAlaThrLysLeuGlnThrArgCysP : 38 !:!!!!!|||! ||||||! ! !! !! !||||||!:! !|||..! ! !| aValThrCysSerTrpProProSerProLeuAlaThrArgThrGlnValLeuLeuP 1058462 : TGTAACTTGTTCGTGGCCACCGTCACCTCTGGCGACCAGAACTCAAGTTTTGCTCT : 1058406 39 : heLysIleIleArgSerLeuLeuPheLeuAsnSerLeuLeuLeuPhePheProLeu : 56 ||!!.! :!: !!||| ! !|||:!!!:!!!!:!! !|||.!!!!.|||||| heAsnThrLeuTrpSerThrAlaPheValSerThrIleAlaLeuLeuLeuProLeu 1058405 : TTAATACGTTGTGGAGCACAGCATTCGTTAGCACCATCGCGCTGCTTTTGCCGCTA : 1058352 57 : LeuTyrPheValTyrValAsnArgAsnAspAsnThrThrPheCysLysAlaMetSe : 75 ||| ! :!!|||! ! !!|||!!.||| !! !! !.!! ! |||.!!:!:|| LeuSerGlyIleTyrGluTyrArgLysAspProIleIleLeuGlyLysThrValSe 1058351 : TTGAGCGGAATTTACGAGTACCGTAAAGACCCCATCATTCTTGGGAAAACAGTCAG : 1058295 76 : rLeuSerLeuAlaValValGlnValProLeuLeuSerSerPheCysIleThrGlnT : 94 ||||:!!! !||||||!.!|||||| !!:!! !! !! !.!.||| ! !||| rLeuAlaSerAlaValAlaGlnValAlaIleLysMetIleMetCysArgPheGlnG 1058294 : CCTCGCCTCGGCTGTCGCCCAGGTGGCAATCAAAATGATAATGTGCCGTTTCCAGC : 1058238 95 : yrAspArgPheGln >>>> Target Intron 1 >>>> ArgLeuIleLysG : 103 ! ! !:!|||||| 83 bp !||| ! ! lnLysGlnPheGln++ ++ValLeuTyrPheA 1058237 : AGAAGCAATTCCAGgt.........................agGTATTGTACTTCG : 1058128 104 : luMetLysPheCysCysGluAsnAlaAsnSerTyrGluArgGlnValPheGlnGly : 121 !:|||:!! !! !|||..! !!|||!.!||| |||::: |||.!.||| !! spMetGluAsnPheCysArgTyrAlaThrSerLysGluLysValValLeuGlnArg 1058127 : ACATGGAGAATTTCTGCAGATACGCCACCtcgaaggaaaaagttgtcCTGCAACGA : 1058074 122 : TyrAlaLysSerTyrAlaThrPheTyrGlyValSerAlaIleTrpPheTyrTrpCy : 140 |||!.! ! !!!||| ! !|||:!!|||:!!! ! !:!!|||! !!:! TyrValAspArgTyrLysTyrPheHisGlyIleTyrIleLeuTrpCysPheLeuTh 1058073 : TACGTGGACAGATACAAATACTTTCATGGGATTTATATATTATGGTGCTTCCTCAC : 1058017 141 : sAlaLeuIleValValValGlyThrLeuPheIleSerAspProPheProThrAsnA : 159 .!!:!!.!!|||:!! !||| !!|||!:! ! !!.!. !!|||||||||:!!| rThrIlePheValIleSerGlyProLeuTyrSerProGlnThrPheProThrHisA 1058016 : GACCATCTTCGTCATAAGTGGTCCATTGTACTCACCACAGACGTTCCCCACTCATG : 1057960 160 : laGluTyrProPheProValHisPheGluProValArgSerIleValPheValGln : 177 || !|||||||||! !|||.!. ! !! ! !!!:: ::::::::: ... laIleTyrProPheGlnValGluHisThrLeuPheLysIleValIleTyrPheHis 1057959 : CGATATATCCTTTCCAAGTGGAACATACACTGTTCAagattgttatttatttccat : 1057906 178 : GlnAlaLeuValGlyPheGlnCysSerAlaHisLeuCysValAsnIlePheCysAl : 196 |||:!!|||||||||||||||...|||||| !:!!..!:!!:!!! ! !|| GlnSerLeuValGlyPheGlnAlaSerAlaGlyMetAlaIleAspThrGlnIleAl 1057905 : CAGTCGTTAGTTGGTTTTCAGGCGTCCGCTGGTATGGCCATCGACACTCAAATTGC : 1057849 197 : aLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuMetAsnGluLeuArgA : 215 ||||||||||! !!:!||||||||||||||||||:!!||| ||||||:!!||| aLeuLeuLeuArgTyrAlaAlaAlaArgPheGluLeuLeuGlyAsnGluMetArgA 1057848 : TCTTCTTCTGCGATACGCGGCTGCCAGGTTCGAGCTATTGGGAAACGAGATGCGAA : 1057792 216 : laValGluAsnIleGluSerLeuIleLysCysIleGluLysTyrTyrAlaIleArg : 233 !!.!.!.!.! ! ..!!!!! ! ||||||||||||:!! !! !:!!! ! snAlaAsnThrHisCysGluPheAsnAlaCysIleGluLysHisSerGluLeuLeu 1057791 : ATGCAAATACTCACTGTGAATTCAATGCCTGCATAGAGAAGCACAGTGAACTTCTC : 1057738 234 : Arg : 234 ||| Arg 1057737 : AGg : 1057733 vulgar: AmOr146 0 234 . KQ414618.1 1058517 1057732 - 395 M 98 294 5 0 2 I 0 79 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057733 1058517 395 - . gene_id 4 ; sequence AmOr146 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1058224 1058517 . - . KQ414618.1 exonerate:protein2genome:local exon 1058224 1058517 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1058222 1058223 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1058141 1058223 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1058141 1058142 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1057733 1058140 . - . KQ414618.1 exonerate:protein2genome:local exon 1057733 1058140 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057733 1058517 395 - . alignment_id 4 ; Query AmOr146 ; Align 1058518 1 294 ; Align 1058141 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr146 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 331 Query range: 267 -> 373 Target range: 1036027 -> 1035474 268 : ArgGlnProPheThrValLysLeuGlnPheLeuThrLeuSerAlaThrThrLeuLe : 286 !:!||||||!!..!!||||||:!!||||||||||||:!!|||!.!|||.!!||||| LysGlnProLeuAlaValLysValGlnPheLeuThrMetSerGlyThrAlaLeuLe 1036027 : AAACAACCGTTGGCTGTTAAAGTTCAATTTCTTACTATGAGTGGAACCGCGTTGCT : 1035973 287 : uAlaValPheMetCysAlaTrpProAlaAspTyrLeuMetAspVal >>>> Tar : 302 |! !||||||||||||:!! |||||||||:!!|||!!:|||:!! uGluValPheMetCysSerLeuProAlaAspHisLeuIleAspMet++ 1035972 : GGAAGTGTTTATGTGTTCACTACCAGCTGACCATTTGATAGATATGgt........ : 1035923 303 : get Intron 1 >>>> SerGluAsnThrMetArgAlaValTyrGluSerGluT : 314 159 bp |||||||||! !|||!:!!.!:!!|||||||||:!!| ++SerGluAsnIleMetGlnGlyIleTyrGluSerLysT 1035922 : .................agAGCGAGAACATAATGCAAGGAATATATGAATCGAAAT : 1035730 315 : rpTyrLysArgSerLeuLysLeuGlnLysPheValLeuPheAlaThrIleProGln : 332 |||||:!!||||||||||||:::|||||| !..!:!!.!! ! !! !|||||| rpTyrGluArgSerLeuLysIleGlnLysSerThrValLeuMetLeuThrProGln 1035729 : GGTACGAACGAtctctaaaaattcaaaagtcTACAGTCCTCATGTTGACTCCTCAA : 1035676 333 : ThrProValIleLeuLysValArgCysIleIleProAlaPheSerLeuAsnTyrTy : 351 :!!||||||! !:!!|||:!!!:!|||:!!||||||!.....|||||||||:::|| SerProValThrValLysIleLysCysLeuIleProValLeuSerLeuAsnPheTy 1035675 : TCTCCGGTGACAGTAAAAATCAAGTGCCTCATTCCAGttctttctttgaattttta : 1035619 352 : rCysSer >>>> Target Intron 2 >>>> PheIleThrAsnValLeuSe : 360 ||||||| 76 bp !:!:!!:!!||||||!!!|| rCysSer++ ++TyrValSerAsnValPheSe 1035618 : ctgCTCGgt.........................agTACGTCTCAAATGTGTTCTC : 1035516 361 : rMetPheThrAlaLeuArgValLeuMetTyrLysAspGlu : 373 |:!:|||||||||||||||:!! !||| !!.|||||| rLeuPheThrAlaLeuArgIleAlaMetIleAsnAspGlu 1035515 : TTTATTTACCGCTTTAAGAATAGCCATGATAAATGatgaa : 1035475 vulgar: AmOr146 267 373 . KQ414618.1 1036027 1035474 - 331 M 34 102 5 0 2 I 0 155 3 0 2 M 52 156 5 0 2 I 0 72 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1035475 1036027 331 - . gene_id 5 ; sequence AmOr146 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1035926 1036027 . - . KQ414618.1 exonerate:protein2genome:local exon 1035926 1036027 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1035924 1035925 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1035767 1035925 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1035767 1035768 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1035611 1035766 . - . KQ414618.1 exonerate:protein2genome:local exon 1035611 1035766 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1035609 1035610 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1035535 1035610 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1035535 1035536 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1035475 1035534 . - . KQ414618.1 exonerate:protein2genome:local exon 1035475 1035534 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1035475 1036027 331 - . alignment_id 5 ; Query AmOr146 ; Align 1036028 268 102 ; Align 1035767 302 156 ; Align 1035535 354 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr146 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 178 Query range: 301 -> 353 Target range: 1028204 -> 1028048 302 : SerGluAsnThrMetArgAlaValTyrGluSerGluTrpTyrLysArgSerLeuLy : 320 |||||||||! !|||!:!!.!:!!|||||||||:!!||||||:!!||||||||||| SerGluAsnIleMetGlnGlyIleTyrGluSerLysTrpTyrGluArgSerLeuLy 1028204 : AGCGAGAACATAATGCAAGGAATATATGAATCAAAATGGTACGAACGAtctctaaa : 1028150 321 : sLeuGlnLysPheValLeuPheAlaThrIleProGlnThrProValIleLeuLysV : 339 |:::|||||| !..!:!!.!! ! !! !||||||:!!||||||! !:!!|||: sIleGlnLysSerThrValLeuMetLeuThrProGlnSerProValThrValLysI 1028149 : aattcaaaagtcTACAGTCCTCATGTTGACTCCTCAATCTCCGGTGACAGTAAAAA : 1028093 340 : alArgCysIleIleProAlaPheSerLeuAsnTyrTyrCysSer : 353 !!!:!|||:!!||||||!.....|||||||||:::||||||||| leLysCysLeuIleProValLeuSerLeuAsnPheTyrCysSer 1028092 : TCAAGTGCCTCATTCCAGttctttctttgaatttttactgCTCG : 1028049 vulgar: AmOr146 301 353 . KQ414618.1 1028204 1028048 - 178 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028049 1028204 178 - . gene_id 6 ; sequence AmOr146 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028049 1028204 . - . KQ414618.1 exonerate:protein2genome:local exon 1028049 1028204 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028049 1028204 178 - . alignment_id 6 ; Query AmOr146 ; Align 1028205 302 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr146 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 267 -> 312 Target range: 1028388 -> 1028253 268 : ArgGlnProPheThrValLysLeuGlnPheLeuThrLeuSerAlaThrThrLeuLe : 286 !:!|||||||||.!!|||||| !||||||||||||:!!|||!.!|||.!!||||| LysGlnProPheAlaValLysAlaGlnPheLeuThrValSerGlyThrAlaLeuLe 1028388 : AAACAACCGTTCGCTGTGAAAGCTCAGTTTCTTACTGTGAGTGGAACCGCTTTGCT : 1028334 287 : uAlaValPheMetCysAlaTrpProAlaAspTyrLeuMetAspValSerGluAsnT : 305 |! !|||.!!||||||:!! |||||||||:!!|||!!:|||:!! !...:!! uGluValLeuMetCysSerLeuProAlaAspHisLeuIleAspMetValSerAspT 1028333 : GGAAGTGCTTATGTGTTCACTACCAGCTGACCATTTGATAGATATGGTAAGTGATT : 1028277 306 : hrMetArgAlaValTyrGluSer : 312 !:!!! ! ! !!!:!:!!:!! yrLeuMetLeuPhePheLysAla 1028276 : ATTTGATGCTATTCTTTAAGGCT : 1028254 vulgar: AmOr146 267 312 . KQ414618.1 1028388 1028253 - 114 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028254 1028388 114 - . gene_id 7 ; sequence AmOr146 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028254 1028388 . - . KQ414618.1 exonerate:protein2genome:local exon 1028254 1028388 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028254 1028388 114 - . alignment_id 7 ; Query AmOr146 ; Align 1028389 268 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr140TRA Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 1276 Query range: 54 -> 420 Target range: 890970 -> 892792 55 : PheThrLeuLeuIleAlaGluLeuArgGlyLeuTyrSerValTrpGlyValAsnTyrA : 74 ||| |||||| |||||||||||||||!!!:!!|||||||||:!!|||| PheIleSerLeuIleLeu***LeuArgGlyLeuTyrArgIleTrpGlyValAspTyrA 890971 : tttatttctttaattttatagcTCAGAGGATTGTACAGAATATGGGGAGTCGACTACG : 891028 75 : spAlaValIleGluCysMetProProIleIleSerIlePheGlnSerAlaSerMetTy : 93 ||!.!||||||||||||||||||||||||||||||||||||! ||| !!!!||||| spValValIleGluCysMetProProIleIleSerIlePheLeuSerLeuThrMetTy 891029 : ATGTGGTCATCGAGTGTATGCCACCAATCATATCAATTTTCCTCAGCCTCACGATGTA : 891085 94 : rPheAsnGlyIlePheAsnThrLysLys >>>> Target Intron 1 >>>> I : 103 |.!!|||||||||||||||! !!!.||| 264 bp | rLeuAsnGlyIlePheAsnMetAsnLys++ ++I 891086 : CCTCAATGGGATTTTTAACATGAACAAGgt.........................agA : 891379 104 : leLysAsnIleLeuLeuPheIleLysAsnAspHisLysTyrTyrIleAsnArgProGl : 122 |||||:!!:!:||||||||||||||| !!:!! !!!.||||||!!:|||!:!||||| leLysAspValLeuLeuPheIleLysTyrAsnCysAsnTyrTyrMetAsnGlnProGl 891380 : TCAAAGATGTGCTTTTGTTTATCAAATACAATTGTAACTATTATATGAATCAACCAGA : 891436 123 : uAsnIleIleLeuGlnLysTyrAspLeuGlnGlyLysLysIleThrPheTyrTyrIle : 141 ||||:::||||||::: |||::: !||||||||||||||||||...||||||! ! uAsnMetIleLeuLysTyrTyrGluArgGlnGlyLysLysIleThrLeuTyrTyrThr 891437 : AAACatgattttaaaatattacgagAGAcagggaaaaaaaattacactttattACACT : 891493 142 : {L} >>>> Target Intron 2 >>>> {eu}TyrValTyrThrThrLeuPheV : 150 {!} 111 bp { !}|||||||||! !||||||!!.: {S}++ ++{er}TyrValTyrMetThrLeuLeuI 891494 : {T}gt.........................ag{CA}TACGTTTATATGACACTTTTAA : 891631 151 : alTyrLeuLeuLeuProThrIleProLeuIleIleAspPheIleThrSerSerAsnHi : 169 !!||||||||||||||| !!!!: !!|||||||||||| !:!!! !|||||||||:! leTyrLeuLeuLeuProProMetSerLeuIleIleAspAspValIleSerSerAsnTy 891632 : TCTACTTACTATTACCGCCCATGTCATTAATAATTGATGACGTTATATCCTCAAATTA : 891688 170 : sSerGlnLysArgAsnPheLeuPheGluLeuAspTyrGlyMetAspLysGlnGlnTyr : 188 !||||||:!!||||||||||||||||||||||||||||||:!!|||!..||||||||| rSerGlnGluArgAsnPheLeuPheGluLeuAspTyrGlyValAspSerGlnGlnTyr 891689 : TTCGCAAGAGCGAAACTTTTTATTCGAACTCGACTATGGCGTGGACAGccaacaatat : 891745 189 : PheTyrTyrIleSerIleHisSerTyrIleGlyThrAlaIleValAlaAsnLeuIleA : 208 |||||||||||||||||||||||||||!!:|||||||||:!!|||||||||||||||| PheTyrTyrIleSerIleHisSerTyrMetGlyThrAlaValValAlaAsnLeuIleA 891746 : ttttattatatatccATTCATTCGTACATGGGAACTGCTGTAGTTGCCAATTTAATTG : 891805 209 : laSerCysAspThrMetTyrMetLeuTyrAlaGlnHisAlaTyrAlaLeuPheAlaIl : 227 ||!!!|||||||||! ||||||||||||:!!|||||||||||||||||||||||||| laThrCysAspThrThrTyrMetLeuTyrSerGlnHisAlaTyrAlaLeuPheAlaIl 891806 : CTACTTGCGATACTACCTACATGTTGTACTCTCAACATGCTTATGCTTTGTTTGCAAT : 891862 228 : eVal{Se} >>>> Target Intron 3 >>>> {r}TyrGluLeuLysThrIle : 235 ||||{!!} 70 bp {!}! !:!!|||||||||:!! eVal{Cy}++ ++{s}SerGlnLeuLysThrVal 891863 : TGTA{TG}gt.........................ag{T}TCTCAATTGAAAACGGTA : 891956 236 : HisIleLeuAsnThrAsnAsnLeuIleAsnValThrAspHisHisLeuLeuGluLysT : 255 |||||||||:!!|||...||||||||||||||| !||| !::::::|||||||||| HisIleLeuAspThrGlyAsnLeuIleAsnValLysAspSerTyrIleLeuGluLysT 891957 : CACATTTTGGATACgggtaatttaataaatgtgaAGGATAGTtatattcttgaaaaat : 892016 256 : yrLysAsnIleThrLeuLeuSerLysAspGluLysLysValTyrArgLysLeuPheIl : 274 ||||||||||| |||||| !! !!!::!!|||||||||! !|||||||||!!.! yrLysAsnIleGluLeuLeuProGlyGluGlnLysLysValCysArgLysLeuLeuAs 892017 : ataaaaatatagaattattGCCAGGGGAGCAAAAGAAAGTTTGTAGGAAATTGTTGAA : 892073 275 : eCysIleLysAsnHisGlnAsnAlaIle{Ly} >>>> Target Intron 4 >>> : 284 !|||||||||.!.|||||||||||||||{:!} 66 bp nCysIleLysGluHisGlnAsnAlaIle{Gl}++ 892074 : CTGTATAAAGGAACACCAAAATGCCATA{GA}gt........................ : 892107 285 : > {s}TyrSerAsnLeuLeuGluSerLeuPheThrLysSerIleLeuValGlnLeuP : 302 {!}||||||!:!:!!|||||||||||||||||||||||||||||| !||||||| ++{u}TyrSerSerValLeuGluSerLeuPheThrLysSerIleLeuSerGlnLeuP 892108 : .ag{A}TACTCAAGTGTTCTTGAATCATTATTCACTAAGTCCATACTTAGTCAACTGT : 892223 303 : hePheAsnValLeuCysLeuSerIleThrGlyValGlu >>>> Target Intron : 315 ||! !|||:!!:!!|||||||||||||||||||||||| 70 bp heCysAsnIleIleCysLeuSerIleThrGlyValGlu++ 892224 : TCTGTAATATCATCTGTCTTAGCATTACAGGAGTGGAAgt.................. : 892264 316 : 5 >>>> ThrValIleLysLeuGlyAsnLeuSerGluMetMetArgPheGlySerP : 331 ||||||!!:||||||||||||:!!.!!!!:|||!!:||||||||||||| ++ThrValMetLysLeuGlyAsnIleGlyAspMetIleArgPheGlySerP 892265 : .......agACTGTAATGAAACTAGGTAATATAGGCGATATGATAAGATTCGGATCAT : 892380 332 : heThrPheAlaGlnAlaValHisIlePhePheLeuCysLeuProGlyGlnArgLeuLe : 350 |||||||||||||||||||||||||||||...:::|||||||||||||||||||||:! heThrPheAlaGlnAlaValHisIlePheLeuIleCysLeuProGlyGlnArgLeuVa 892381 : TTACGTTCGCACAAGCAGttcatatatttttgatttgCCTTCCTGGACAAAGACTGGT : 892437 351 : uAsnHisSerGluGluLeuHisValSer{Al} >>>> Target Intron 6 >>> : 360 !||||||||||||:!!:!!:!!!.!!!!{||} 69 bp lAsnHisSerGluGlnValTyrAlaThr{Al}++ 892438 : GAATCATAGTGAACAGGTGTACGCCACG{gc}gt........................ : 892471 361 : > {a}CysGluValThrTrpTyrIlePheProLysLysTyrGlnAsnLeuTyrLysP : 378 {|}|||||||||! !||||||! !.!!|||||||||! !!!.:::|||||||||| ++{a}CysGluValMetTrpTyrThrLeuProLysLysCysHisSerLeuTyrLysP 892472 : .ag{a}tGTGAGGTAATGTGGTACACACTTCCTAAGAAGTGTCACagtttatataaat : 892590 379 : heLeuLeuAlaArgSerLeuIlePheSerLysLeuThrAlaPheLysValThrThrLe : 397 |||||||||||||||||! !! ! !||||||:!!||||||!:!|||:!!.!! !!:! heLeuLeuAlaArgSerSerLysProSerLysIleThrAlaTyrLysLeuAlaProMe 892591 : ttttgctGGCAAGAAGTTCGAAACCTAGTAAAATAACAGCTTATAAACTAGCACCCAT : 892647 398 : uSerMetGlnThrPheLeuAla >>>> Target Intron 7 >>>> IleIleG : 407 !!!!|||:!!|||||||||||| 74 bp ||||||| tThrMetGluThrPheLeuAla++ ++IleIleG 892648 : GACGATGGAGACGTTTCTCgcggt.........................agattATTC : 892751 408 : lnThrAlaMetSerTyrPheThrValLeuLeuSerThrThr : 420 ||||||||||||||||||||||||||||||||||||||||| lnThrAlaMetSerTyrPheThrValLeuLeuSerThrThr 892752 : AAACTGCAATGAGTTATTTTACTGTACTATTATCAACAACA : 892792 vulgar: AmOr140TRA 54 420 . KQ414735.1 890970 892792 + 1276 M 48 144 5 0 2 I 0 260 3 0 2 M 39 117 S 0 1 5 0 2 I 0 107 3 0 2 S 1 2 M 86 258 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 54 162 S 0 2 5 0 2 I 0 62 3 0 2 S 1 1 M 30 90 5 0 2 I 0 66 3 0 2 M 45 135 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 44 132 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 890971 892792 1276 + . gene_id 1 ; sequence AmOr140TRA ; gene_orientation + KQ414735.1 exonerate:protein2genome:local cds 890971 891114 . + . KQ414735.1 exonerate:protein2genome:local exon 890971 891114 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local splice5 891115 891116 . + . intron_id 1 ; splice_site "GT" KQ414735.1 exonerate:protein2genome:local intron 891115 891378 . + . intron_id 1 KQ414735.1 exonerate:protein2genome:local splice3 891377 891378 . + . intron_id 0 ; splice_site "AG" KQ414735.1 exonerate:protein2genome:local cds 891379 891496 . + . KQ414735.1 exonerate:protein2genome:local exon 891379 891496 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local splice5 891497 891498 . + . intron_id 2 ; splice_site "GT" KQ414735.1 exonerate:protein2genome:local intron 891497 891607 . + . intron_id 2 KQ414735.1 exonerate:protein2genome:local splice3 891606 891607 . + . intron_id 1 ; splice_site "AG" KQ414735.1 exonerate:protein2genome:local cds 891608 891869 . + . KQ414735.1 exonerate:protein2genome:local exon 891608 891869 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local splice5 891870 891871 . + . intron_id 3 ; splice_site "GT" KQ414735.1 exonerate:protein2genome:local intron 891870 891939 . + . intron_id 3 KQ414735.1 exonerate:protein2genome:local splice3 891938 891939 . + . intron_id 2 ; splice_site "AG" KQ414735.1 exonerate:protein2genome:local cds 891940 892104 . + . KQ414735.1 exonerate:protein2genome:local exon 891940 892104 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local splice5 892105 892106 . + . intron_id 4 ; splice_site "GT" KQ414735.1 exonerate:protein2genome:local intron 892105 892170 . + . intron_id 4 KQ414735.1 exonerate:protein2genome:local splice3 892169 892170 . + . intron_id 3 ; splice_site "AG" KQ414735.1 exonerate:protein2genome:local cds 892171 892261 . + . KQ414735.1 exonerate:protein2genome:local exon 892171 892261 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local splice5 892262 892263 . + . intron_id 5 ; splice_site "GT" KQ414735.1 exonerate:protein2genome:local intron 892262 892331 . + . intron_id 5 KQ414735.1 exonerate:protein2genome:local splice3 892330 892331 . + . intron_id 4 ; splice_site "AG" KQ414735.1 exonerate:protein2genome:local cds 892332 892468 . + . KQ414735.1 exonerate:protein2genome:local exon 892332 892468 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local splice5 892469 892470 . + . intron_id 6 ; splice_site "gt" KQ414735.1 exonerate:protein2genome:local intron 892469 892537 . + . intron_id 6 KQ414735.1 exonerate:protein2genome:local splice3 892536 892537 . + . intron_id 5 ; splice_site "ag" KQ414735.1 exonerate:protein2genome:local cds 892538 892670 . + . KQ414735.1 exonerate:protein2genome:local exon 892538 892670 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local splice5 892671 892672 . + . intron_id 7 ; splice_site "gt" KQ414735.1 exonerate:protein2genome:local intron 892671 892744 . + . intron_id 7 KQ414735.1 exonerate:protein2genome:local splice3 892743 892744 . + . intron_id 6 ; splice_site "ag" KQ414735.1 exonerate:protein2genome:local cds 892745 892792 . + . KQ414735.1 exonerate:protein2genome:local exon 892745 892792 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 890971 892792 1276 + . alignment_id 1 ; Query AmOr140TRA ; Align 890971 55 144 ; Align 891379 103 117 ; Align 891610 143 258 ; Align 891941 230 162 ; Align 892172 285 90 ; Align 892332 315 135 ; Align 892539 361 132 ; Align 892745 405 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr140TRA Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 212 Query range: 11 -> 68 Target range: 890198 -> 890027 12 : ValAspMetAspPhePheGluGlnProAlaTyrLeuLeuAsnLysArgLeuLeuSerI : 31 |||..!||||||||||||||||||||||||||||||||||||||||||||||||!!!| ValSerMetAspPhePheGluGlnProAlaTyrLeuLeuAsnLysArgLeuLeuThrI 890198 : GTTAGCATGGACTTCTTCGAGCAACCTGCTTACTTATTGAACAAGCGTCTTCTGACAA : 890141 32 : leIleGlyIleTrpProPheGlnLysSerLeuProLysLeuLeuArgGlnAsnIleVa : 50 ||:!!||||||||||||||||||!..!!!! ! !!!:!||||||||||||!.!:!::! leValGlyIleTrpProPheGlnSerThrSerSerArgLeuLeuArgGlnThrValMe 890140 : TCGTCGGGATATGGCCGTTCCAGAGCACCTCATCTAGATTGTTGAGACAAACCGTGAT : 890084 51 : lLeuIlePheCysPheThrLeuLeuIleAlaGluLeuArgGlyLeuTyrSerVal : 68 !|||.!!|||||||||||||||||||||||||||:!!! ! ! !||| ::: tLeuPhePheCysPheThrLeuLeuIleAlaGluValMetLysLysTyrHisIle 890083 : GCTGTTCTTTTGCTTCACCCTTTTGATAGCAGAGGTAATGAAAAAGTAtcacatt : 890028 vulgar: AmOr140TRA 11 68 . KQ414735.1 890198 890027 - 212 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 890028 890198 212 - . gene_id 1 ; sequence AmOr140TRA ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 890028 890198 . - . KQ414735.1 exonerate:protein2genome:local exon 890028 890198 . - . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 890028 890198 212 - . alignment_id 1 ; Query AmOr140TRA ; Align 890199 12 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr140TRA Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 13 -> 67 Target range: 885605 -> 885443 14 : MetAspPhePheGluGlnProAlaTyrLeuLeuAsnLysArgLeuLeuSerIleIleG : 33 ||||||||||||!!:||||||.!!!:!! !||||||||| !||| ! !:!!.!!| MetAspPhePheAspGlnProThrPheSerLeuAsnLysPheLeuAlaValLeuPheG 885605 : ATGGATTTTTTCGATCAACCTACGTTTTCGCTAAATAAGTTCCTGGCTGTTTTATTTG : 885548 34 : lyIleTrpProPheGlnLysSerLeuProLysLeuLeuArgGlnAsnIleValLeuIl : 52 ||! !||||||||||||!..! ! !! !! !:!!:!!|||.!.! :!!||| !|| lyThrTrpProPheGlnSerIleThrGlnThrValValArgAsnIleLeuValSerIl 885547 : GAACCTGGCCCTTCCAGAGCATAACACAAACAGTCGTGAGAAATATATTAGTGAGCAT : 885491 53 : ePheCysPheThrLeuLeuIleAlaGluLeuArgGlyLeuTyrSer : 67 | ! !.!!!:!:!!:!!||| !!|||:!!!.! !|||! !||| eGlyIleIleSerIleIleIleProGluValAsnHisLeuCysSer 885490 : CGGTATTATTAGTATTATAATACCAGAGGTAAATCATTTATGCAGT : 885444 vulgar: AmOr140TRA 13 67 . KQ414735.1 885605 885443 - 108 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 885444 885605 108 - . gene_id 2 ; sequence AmOr140TRA ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 885444 885605 . - . KQ414735.1 exonerate:protein2genome:local exon 885444 885605 . - . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 885444 885605 108 - . alignment_id 2 ; Query AmOr140TRA ; Align 885606 14 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr140TRA Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 157 Query range: 134 -> 227 Target range: 42757 -> 42478 135 : LysIleThrPheTyrTyrIleLeuTyrValTyrThrThrLeuPheValTyrLeuLeuLeu : 154 ...::::::||| ::: :!! !! ! ! !!!! :!!!:!:!!! ! ! SerValSerPheIlePheThrValThrGlyIleCysCysPheThrMetPheIleSerAla 42757 : TcggtttctttcattttcacagTAACTGGAATATGTTGCTTCACAATGTTTATCTCTGCG : 42700 155 : ProThrIleProLeuIleIleAspPheIleThrSerSerAsnHisSerGlnLysArgAsn : 174 ||| !||||||! !:!! !||| !!!!: !|||!.!|||.!.|||!:!||| !..! ProTyrIleProHisValTyrAspValMetLeuSerLysAsnGluSerArgLysLeuGly 42699 : CCTTATATACCGCATGTATATGATGTTATGTTATCGAAAAACGAGTCACGAAAGTTGGGT : 42640 175 : PheLeuPheGluLeuAspTyrGlyMetAspLysGlnGlnTyrPheTyrTyrIleSerIle : 194 |||:!!!:! ! !!||||||:!:|||:!!.!.:!!|||!:!|||||||||! ! ! PheIleTyrProAlaTyrTyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAla 42639 : TTCATTTACCCTGCCTATTATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCT : 42580 195 : HisSerTyrIleGlyThrAlaIleValAlaAsnLeuIleAlaSerCysAspThrMetTyr : 214 |||! ! !||| ! !:!:||| ! ! !.!! !||||||||||||!!:||| HisMetThrSerGlyGlyLeuValValPhePheThrPheIleSerCysAspThrIleTyr 42579 : CACATGACATCTGGGGGCTTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTAC : 42520 215 : MetLeuTyrAlaGlnHisAlaTyrAlaLeuPheAlaIle : 227 ||| ! !!.!|||||||||! !!.!|||!!. !||| MetAsnIleValGlnHisAlaCysGlyLeuLeuLeuIle 42519 : ATGAATATCGTGCAACACGCGTGCGGATTGTTGTTGATT : 42479 vulgar: AmOr140TRA 134 227 . KQ414772.1 42757 42478 - 157 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42479 42757 157 - . gene_id 1 ; sequence AmOr140TRA ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42479 42757 . - . KQ414772.1 exonerate:protein2genome:local exon 42479 42757 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42479 42757 157 - . alignment_id 1 ; Query AmOr140TRA ; Align 42758 135 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr140TRA Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 143 Query range: 154 -> 227 Target range: 33637 -> 33418 155 : ProThrIleProLeuIleIleAspPheIleThrSerSerAsnHisSerGlnLysArgAsn : 174 ||| !||||||! !.!!|||||| !! !|||!.!|||.!.|||!:!||| !!:! ProPheIleProHisPheIleAspValAlaLeuSerLysAsnGluSerArgLysLeuSer 33637 : CCTTTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAACGAGTCACGAAAATTAAGT : 33580 175 : PheLeuPheGluLeuAspTyrGlyMetAspLysGlnGlnTyrPheTyrTyrIleSerIle : 194 !!.:!!!:! ! !!||||||!!:|||:!!...:::|||:::||||||::: ! LeuMetTyrProAlaTyrTyrGlyIleAspGlnAspLysTyrTyrTyrTyrLeuMetAla 33579 : TTGATGTACCCTGCCTATTACGGCATTGACCAGGacaagtattattattatctaatgGCT : 33520 195 : HisSerTyrIleGlyThrAlaIleValAlaAsnLeuIleAlaSerCysAspThrMetTyr : 214 |||! ! ! !!.! !||| ||| ! !:!!.!! !||||||||||||!!:||| HisMetMetSerAlaGlyAlaAlaValPhePheValPheMetSerCysAspThrIleTyr 33519 : CACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATGTCCTGCGACACGATTTAT : 33460 215 : MetLeuTyrAlaGlnHisAlaTyrAlaLeuPheAlaIle : 227 ||| ! !!.!|||||||||! !!.!|||!!. !||| MetAsnIleValGlnHisAlaCysGlyLeuLeuPheIle 33459 : ATGAATATCGTTCAACACGCGTGCGGATTGTTGTTCATT : 33419 vulgar: AmOr140TRA 154 227 . KQ414772.1 33637 33418 - 143 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33419 33637 143 - . gene_id 2 ; sequence AmOr140TRA ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33419 33637 . - . KQ414772.1 exonerate:protein2genome:local exon 33419 33637 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 33419 33637 143 - . alignment_id 2 ; Query AmOr140TRA ; Align 33638 155 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr140TRA Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 149 -> 224 Target range: 24416 -> 24191 150 : ValTyrLeuLeuLeuProThrIleProLeuIleIleAspPheIleThrSerSerAsnHis : 169 :!!!:! ! !:!! !!! !! !|||! !:!!:!!|||.!!|||:!! !!!.!|||.!. LeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGlu 24416 : CTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAA : 24359 170 : SerGlnLysArgAsnPheLeuPheGluLeuAspTyrGlyMetAspLysGlnGlnTyrPhe : 189 |||!:: ! !..!|||:!!!:! !:!!||||||:!:|||:!!:!!:!!:!!!:! SerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyr 24358 : TCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTAC : 24299 190 : TyrTyrIleSerIleHisSerTyrIleGlyThrAlaIleValAlaAsnLeuIleAlaSer : 209 ||||||:!:! ! !|||! ! ! !! !! !.!!:!!||| ! !:!! ! !||| TyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIleSer 24298 : TACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCC : 24239 210 : CysAspThrMetTyrMetLeuTyrAlaGlnHisAlaTyrAlaLeu : 224 |||||||||!!:|||||| ! !!.!|||||||||! !!.!||| CysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeu 24238 : TGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTA : 24192 vulgar: AmOr140TRA 149 224 . KQ414772.1 24416 24191 - 130 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24192 24416 130 - . gene_id 3 ; sequence AmOr140TRA ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24192 24416 . - . KQ414772.1 exonerate:protein2genome:local exon 24192 24416 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 24192 24416 130 - . alignment_id 3 ; Query AmOr140TRA ; Align 24417 150 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr140TRA Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 129 Query range: 149 -> 227 Target range: 29595 -> 29361 150 : ValTyrLeuLeuLeuProThrIleProLeuIleIleAspPheIleThrSerSerAsnHis : 169 :!!!:! !! !:!! !!! !! !|||! !:!!:!!|||.!!|||:!! !!!.!|||.!. IlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGlu 29595 : ATATTCACCTCAGTGGCGATAACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAA : 29538 170 : SerGlnLysArgAsnPheLeuPheGluLeuAspTyrGlyMetAspLysGlnGlnTyrPhe : 189 |||!:: ! !..!|||:!!!:! ! !!||||||:!:|||:!!:!!:!!:!!!:! SerArgGlyValGlyPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyr 29537 : TCGCGCGGAGTGGGCTTCATTTATCCTGCATACTACGGTCTTGACGAAGAGGAGCATTAC : 29478 190 : TyrTyrIleSerIleHisSerTyrIleGlyThrAlaIleValAlaAsnLeuIleAlaSer : 209 ||||||:!:! ! !|||! ! ! !! !! !.!!:!!||| ! !:!! ! !||| TyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIleSer 29477 : TACTATCTGATGGGTCACATGCTTTCCGTGATAACCGTCGTGTTTTTCGTCTACATCTCC : 29418 210 : CysAspThrMetTyrMetLeuTyrAlaGlnHisAlaTyrAlaLeuPheAlaIle : 227 |||||||||!!:|||||| ! !!.!|||||||||! !!.!|||!!. !:!! CysAspThrIleTyrMetAsnValValGlnHisAlaCysGlyLeuLeuAsnVal 29417 : TGTGACACGATCTATATGAATGTCGTGCAACACGCGTGTGGATTATTGAACGTC : 29362 vulgar: AmOr140TRA 149 227 . KQ414772.1 29595 29361 - 129 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29362 29595 129 - . gene_id 4 ; sequence AmOr140TRA ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29362 29595 . - . KQ414772.1 exonerate:protein2genome:local exon 29362 29595 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 29362 29595 129 - . alignment_id 4 ; Query AmOr140TRA ; Align 29596 150 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr140TRA Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 136 -> 227 Target range: 38048 -> 37775 137 : ThrPheTyrTyrIleLeuTyrValTyrThrThrLeuPheValTyrLeuLeuLeuProThr : 156 :!!.!.|||!:!! !:!! !!! ! ! !! ! !!:!!!:! !! !:!! !!! ! SerLeuTyrPheThrValAsnGlyLeuPheCysTyrValIlePheThrSerValAlaIle 38048 : TCTCTGTATTTCACAGTAAACGGACTGTTTTGCTACGTTATATTCACCTCAGTGGCGATT : 37991 157 : IleProLeuIleIleAspPheIleThrSerSerAsnHisSerGlnLysArgAsnPheLeu : 176 ! |||! !:!!:!!|||.!!|||:!! !!!.!|||.!.|||!:: ! !:!!|||:!! ThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValAspPheIle 37990 : ACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTCATT : 37931 177 : PheGluLeuAspTyrGlyMetAspLysGlnGlnTyrPheTyrTyrIleSerIleHisSer : 196 !:! ! !!||||||:!:|||:!!:!!:!!:!!!:!||| !:!:! ! !|||! ! TyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHisMet 37930 : TATCCTGCATACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCACATG : 37871 197 : TyrIleGlyThrAlaIleValAlaAsnLeuIleAlaSerCysAspThrMetTyrMetLeu : 216 ! !! !! !.!!:!!||| ! !:!! ! !||||||||||||!!:|||||| ! LeuCysValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMetSer 37870 : CTCTGCGTGATAACTGTAGTGTTTTTCGTGTACATCTCCTGTGACACGATCTACATGAGC : 37811 217 : TyrAlaGlnHisAlaTyrAlaLeuPheAlaIle : 227 !!.!|||||||||! !!.!|||.!. !:!! IleValGlnHisAlaCysGlyLeuLeuAsnVal 37810 : ATCGTTCAACACGCGTGCGGATTACTGAACGTC : 37776 vulgar: AmOr140TRA 136 227 . KQ414772.1 38048 37775 - 124 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37776 38048 124 - . gene_id 5 ; sequence AmOr140TRA ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37776 38048 . - . KQ414772.1 exonerate:protein2genome:local exon 37776 38048 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 37776 38048 124 - . alignment_id 5 ; Query AmOr140TRA ; Align 38049 137 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr140TRA Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 149 -> 224 Target range: 29610 -> 29385 150 : ValTyrLeuLeuLeuProThrIleProLeuIleIleAspPheIleThrSerSerAsnHis : 169 :!!!:! ! !:!! !!! !! !|||! !:!!:!!|||.!!|||:!! !!!.!|||.!. LeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGlu 29610 : CTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAA : 29553 170 : SerGlnLysArgAsnPheLeuPheGluLeuAspTyrGlyMetAspLysGlnGlnTyrPhe : 189 |||!:: ! !..!|||:!!!:! !:!!||||||:!:|||:!!:!!:!!:!!!:! SerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyr 29552 : TCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTAC : 29493 190 : TyrTyrIleSerIleHisSerTyrIleGlyThrAlaIleValAlaAsnLeuIleAlaSer : 209 ||||||:!:! ! !|||! ! ! !! !! !.!!:!!||| ! !:!! ! !||| TyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIleSer 29492 : TACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCC : 29433 210 : CysAspThrMetTyrMetLeuTyrAlaGlnHisAlaTyrAlaLeu : 224 |||||||||!!:|||||| ! !!.!|||||||||! !!.!||| CysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeu 29432 : TGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTA : 29386 vulgar: AmOr140TRA 149 224 . LHQN01017803.1 29610 29385 - 130 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29386 29610 130 - . gene_id 1 ; sequence AmOr140TRA ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29386 29610 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29386 29610 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 29386 29610 130 - . alignment_id 1 ; Query AmOr140TRA ; Align 29611 150 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr133FIX Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 0 -> 126 Target range: 443381 -> 444227 1 : MetAspValPheAspLysHisTyrTyrThrTyrArgPheIleLeuLysIleIleGlyL : 20 ||||||||||||:!!|||!!.||| |||||||||.!!!!:|||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 443382 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGTTAGGAC : 443439 21 : euTrpProTyrAsnAsnSerValTyrValTrpIleGlnArgLeuLeuLeuLeuThrPh : 39 |||||||||||::!.!.|||:!!||| ! |||!!.|||:!!! !!!! !|||.! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 443440 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 443496 40 : eTyrValGlyAsnIleIlePheGln >>>> Target Intron 1 >>>> IleV : 49 ! :!!..! !|||||||||:!! 464 bp :!!| eIleLeuSerCysIleIlePheGlu++ -+LeuV 443497 : TATACTTTCGTGTATTATATTTGAGgt.........................tgCTCG : 443990 50 : alLeuLeuLeuArgSerLysIleThrValArgAsnCysIleLeuIleLeuSerThrTh : 68 |||||!!!!!!..! !! ! :!!:!! !!! ! ! !.!!! !.!!:!!|||!.!|| alLeuPhePheGluArgTyrValSerPheIleCysAsnPheProPheValSerAsnTh 443991 : TGTTATTCTTCGAGCGATACGTTTCATTCATCTGTAACTTTCCATTTGTAAGTAACAC : 444047 69 : rCysProLeuIleIleIleSerLeuArgTyrIleArgPheIleLeuPhe----PhePr : 86 | ! !|||:!! !:!!|||:!! !! ! ! !.!.! ! !|||####.!! rGly***LeuValTyrValSerIleCysArgTyrSerIleLysProPhe####LeuMe 444048 : TGGATAATTAGTATATGTATCTATATGTCGTTATTCTATAAAGCCATTTTGTGCTTAT : 444105 87 : oLysIleLysTyrLeuPheHisHisMetCysMetGluGluAsnIleIleGlnAspSer : 105 !:!!:!!|||! !:!!|||.!. !!!: ! !!:! ! !!! :!!||||||||| tGlnValLysSerIlePheGluCysIleGlnThrAspValTyrThrLeuGlnAspSer 444106 : GCAGGTCAAGTCTATCTTTGAGTGTATACAGACAGATGTATATACGCTACAAGATTCG : 444162 106 : IleGluAlaGlnIleArgThrLysTyrIleSerAspSerArgHisMetIleGluIleL : 125 ! !||| !:!!|||! !||||||||||||..!||||||!!!!..!!:||| |||. AsnGluMetLysIleLeuThrLysTyrIleAspAspSerSerArgIleIleThrIleP 444163 : AACGAGATGAAGATACTAACGAAATATATCGATGATTCAAGTCGAATaatcacaattt : 444222 126 : euLeu : 126 ..||| heLeu 444223 : tccta : 444227 vulgar: AmOr133FIX 0 126 . KQ414815.1 443381 444227 + 152 M 47 141 5 0 2 I 0 460 3 0 2 M 37 111 F 0 4 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 443382 444227 152 + . gene_id 1 ; sequence AmOr133FIX ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 443382 443522 . + . KQ414815.1 exonerate:protein2genome:local exon 443382 443522 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 443523 443524 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 443523 443986 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 443985 443986 . + . intron_id 0 ; splice_site "TG" KQ414815.1 exonerate:protein2genome:local cds 443987 444227 . + . KQ414815.1 exonerate:protein2genome:local exon 443987 444227 . + . insertions 0 ; deletions 0 ; frameshifts 4 KQ414815.1 exonerate:protein2genome:local similarity 443382 444227 152 + . alignment_id 1 ; Query AmOr133FIX ; Align 443382 1 141 ; Align 443987 48 111 ; Align 444102 85 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr133FIX Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 0 -> 49 Target range: 439271 -> 439418 1 : MetAspValPheAspLysHisTyrTyrThrTyrArgPheIleLeuLysIleIleGlyL : 20 ||||||||||||:!!|||!!.||| |||||||||.!!!!:|||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 439272 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGCTAGGAC : 439329 21 : euTrpProTyrAsnAsnSerValTyrValTrpIleGlnArgLeuLeuLeuLeuThrPh : 39 |||||||||||::!.!.|||:!!||| ! |||!!.|||:!!! !!!! !|||.! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 439330 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 439386 40 : eTyrValGlyAsnIleIlePheGlnIleVal : 49 ! :!!..! !|||||||||:!!:!::!! eMetLeuSerCysIleIlePheGluValMet 439387 : TATGCTTTCGTGTATTATATTTGAGGTGATG : 439418 vulgar: AmOr133FIX 0 49 . KQ414815.1 439271 439418 + 134 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439272 439418 134 + . gene_id 2 ; sequence AmOr133FIX ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 439272 439418 . + . KQ414815.1 exonerate:protein2genome:local exon 439272 439418 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 439272 439418 134 + . alignment_id 2 ; Query AmOr133FIX ; Align 439272 1 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr133FIX Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 236 -> 329 Target range: 440862 -> 441596 237 : AlaGluLeuTyrCysValValAspIleHisAsnGlnAlaIleGlnLeu >>>> Tar : 253 .!!!!:!!!||||||!.!||||||||||||!..::! !|||:!!||| ThrAspPheTyrCysAlaValAspIleHisThrArgIleIleLysLeu++ 440863 : ACCGACTTCTACTGTGCCGTGGACATTCACACAAGAATTATAAAGTTGgt........ : 440913 254 : get Intron 1 >>>> PheAsn<->IleIleIleLysAsnSerGlyLysGlnPhe : 264 452 bp !::: :!!|||||||||:!!!!! !!:! !!:: +-GlySerProLeuIleIleLysAspThrProArgValTrp 440914 : .................aaGGTTCGCCGTTAATTATCAAAGATACTCCGAGAGTGTGG : 441399 265 : MetIleSerAlaPheLeuSerMetIleSerMetAlaIleSerLeuHisArgLeuValA : 284 ! !||| !!:!! !!!!! ... !:!! !:!:!!|||! LysSerSerIleTyrProThrLysArgLys***PheHisHisValSerGlnIleValL 441400 : AAATCTTCAATTTATCCAACTAAAcgtaaataatttcatcaTGTTTCACAGATAGTAA : 441459 285 : snAlaIleThrIleLysLysAspGlnLeuGluIleLeuIleSerLeuIleIlePheVa : 303 !.||||||..!! !! !!!.||||||||||||||||||:!!|||:!!!!:||| !! ysAlaIleValThrMetAsnAspGlnLeuGluIleLeuLeuSerIleMetIleValSe 441460 : AAGCAATAGTGACAATGAATGATCAATTGGAGATACTGTTAAGTATCATGATCGTCAG : 441516 304 : lAsnHisLeuValIleMetPheLeuCysAsnHisThrAlaGlnIleLeuIleAsnAsn : 322 !||||||:!!|||.!!:!!|||!!! !|||:!!.!!!.!|||:!!|||||||||:!! rAsnHisIleValPheLeuPhePheAsnAsnTyrAlaGlyGlnLeuLeuIleAsnHis 441517 : TAATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGGACAGTTACTGATAAACCAT : 441573 323 : AsnGluGluPhePheHisGlu : 329 !:!|||||| !!||| !||| SerGluGluValPheValGlu 441574 : AGCGAAGAAGTCTTCGTTGAA : 441596 vulgar: AmOr133FIX 236 329 . KQ414815.1 440862 441596 + 132 M 16 48 5 0 2 I 0 448 3 0 2 M 2 6 G 0 3 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 440863 441596 132 + . gene_id 3 ; sequence AmOr133FIX ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 440863 440910 . + . KQ414815.1 exonerate:protein2genome:local exon 440863 440910 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 440911 440912 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 440911 441362 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 441361 441362 . + . intron_id 0 ; splice_site "AA" KQ414815.1 exonerate:protein2genome:local cds 441363 441596 . + . KQ414815.1 exonerate:protein2genome:local exon 441363 441596 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 440863 441596 132 + . alignment_id 3 ; Query AmOr133FIX ; Align 440863 237 48 ; Align 441363 253 6 ; Align 441372 255 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr133FIX Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 236 -> 329 Target range: 444974 -> 445708 237 : AlaGluLeuTyrCysValValAspIleHisAsnGlnAlaIleGlnLeu >>>> Tar : 253 .!!!!:!!!||||||!.!||||||||||||!..::! !|||:!!||| ThrAspPheTyrCysAlaValAspIleHisThrArgIleIleLysLeu++ 444975 : ACCGACTTCTACTGTGCCGTGGACATTCACACAAGAATTATAAAGTTGgt........ : 445025 254 : get Intron 1 >>>> PheAsn<->IleIleIleLysAsnSerGlyLysGlnPhe : 264 452 bp !::: :!!|||||||||:!!!!! !!:! !!:: +-GlySerProLeuIleIleLysAspThrProArgValTrp 445026 : .................aaGGTTCGCCGTTAATTATCAAAGATACTCCGAGAGTGTGG : 445511 265 : MetIleSerAlaPheLeuSerMetIleSerMetAlaIleSerLeuHisArgLeuValA : 284 ! !||| !!:!! !!!!! ... !:!! !:!:!!|||! LysSerSerIleTyrProThrLysArgLys***PheHisHisValSerGlnIleValL 445512 : AAATCTTCAATTTATCCAACTAAAcgtaaataatttcatcaTGTTTCACAGATAGTAA : 445571 285 : snAlaIleThrIleLysLysAspGlnLeuGluIleLeuIleSerLeuIleIlePheVa : 303 !.||||||..!! !! !!!.||||||||||||||||||:!!|||:!!!!:||| !! ysAlaIleValThrMetAsnAspGlnLeuGluIleLeuLeuSerIleMetIleValSe 445572 : AAGCAATAGTGACAATGAATGATCAATTGGAGATACTGTTAAGTATCATGATCGTCAG : 445628 304 : lAsnHisLeuValIleMetPheLeuCysAsnHisThrAlaGlnIleLeuIleAsnAsn : 322 !||||||:!!|||.!!:!!|||!!! !|||:!!.!!!.!|||:!!|||||||||:!! rAsnHisIleValPheLeuPhePheAsnAsnTyrAlaGlyGlnLeuLeuIleAsnHis 445629 : TAATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGGACAGTTACTGATAAACCAT : 445685 323 : AsnGluGluPhePheHisGlu : 329 !:!|||||| !!||| !||| SerGluGluValPheValGlu 445686 : AGCGAAGAAGTCTTCGTTGAA : 445708 vulgar: AmOr133FIX 236 329 . KQ414815.1 444974 445708 + 132 M 16 48 5 0 2 I 0 448 3 0 2 M 2 6 G 0 3 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 444975 445708 132 + . gene_id 4 ; sequence AmOr133FIX ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 444975 445022 . + . KQ414815.1 exonerate:protein2genome:local exon 444975 445022 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445023 445024 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445023 445474 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 445473 445474 . + . intron_id 0 ; splice_site "AA" KQ414815.1 exonerate:protein2genome:local cds 445475 445708 . + . KQ414815.1 exonerate:protein2genome:local exon 445475 445708 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 444975 445708 132 + . alignment_id 4 ; Query AmOr133FIX ; Align 444975 237 48 ; Align 445475 253 6 ; Align 445484 255 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr122 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 239 Query range: 279 -> 389 Target range: 445552 -> 446064 280 : AsnLeuTyrArgLeuTyrLysAlaLeuIleThrMetAspAsnArgIleGluIlePheG : 299 ::!:!!! !:!:!! ||||||:!!:!:||||||:!!:!!!:!:!:||||||.!. HisValSerGlnIleValLysAlaIleValThrMetAsnAspGlnLeuGluIleLeuL 445553 : caTGTTTCACAGATAGTAAAAGCAATAGTGACAATGAATGATCAATTGGAGATACTGT : 445610 300 : lySerThrLeuIleValIleTyrHisLeuMetIleAlaPheTyrAsnAsnHisCysGl : 318 !|||! !:!!||||||! ! !!|||:!!:!!.!! !|||!:!||||||:!!...|| euSerIleMetIleValSerAsnHisIleValPheLeuPhePheAsnAsnTyrAlaGl 445611 : TAAGTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGG : 445667 319 : yGlnLeuIleIleAspSerAsnLeuGlyIlePhe<->Asn{Gl} >>>> Target : 331 |||||||:!:|||:!! !!:! !! !:!!||| .!.{..} 10 yGlnLeuLeuIleAsnHisSerGluGluValPheValGlu{Se}++ 445668 : ACAGTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA{TC}gt............ : 445713 332 : Intron 1 >>>> {u}PheAlaSerThrTrpTyrArgIleProLeuLysAlaGlnL : 345 6 bp {!}!:! !|||||||||||| !!:!!||||||!..||||||| ++{r}TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnL 445714 : .............ag{A}TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAA : 445857 346 : ysLeuLeuLeuPheMetIleLeuArgSerSerMetGlyCysGluIleCysLeuSerGl : 364 ||||||||||||||!!:!!::!!!:!|||!!!!!: !|||:!!||| !|||||||| ysLeuLeuLeuPheIleMetMetLysSerThrIleProCysLysIleAsnLeuSerGl 445858 : AGTTGTTATTGTTCATCATGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGG : 445914 365 : yLeuPheThrProSerTyrAlaGlyLeuThrSer >>>> Target Intron 2 > : 376 |:!!|||.!!|||!!!||| !|||!!!:!!||| 73 bp yIlePheAlaProCysTyrLysGlyPheSerSer++ 445915 : TATATTTGCTCCGTGTTACAAAGGTTTTTCCTCGgt...................... : 445952 377 : >>> MetMetSerSerSerPheSerTyrCysThrValIleTyrSer : 389 |||!!:|||!!!|||||||||||| !|||!.!||||||||| ++MetIleSerThrSerPheSerTyrValThrAlaIleTyrSer 445953 : ...agATGATAAGCACTTCTTTCTCGTATGTCACAGCGATATATTCG : 446064 vulgar: AmOr122 279 389 . KQ414815.1 445552 446064 + 239 M 50 150 G 0 3 M 1 3 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 44 132 5 0 2 I 0 69 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445553 446064 239 + . gene_id 1 ; sequence AmOr122 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 445553 445710 . + . KQ414815.1 exonerate:protein2genome:local exon 445553 445710 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445711 445712 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445711 445816 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 445815 445816 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 445817 445949 . + . KQ414815.1 exonerate:protein2genome:local exon 445817 445949 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445950 445951 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445950 446022 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 446021 446022 . + . intron_id 1 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 446023 446064 . + . KQ414815.1 exonerate:protein2genome:local exon 446023 446064 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445553 446064 239 + . alignment_id 1 ; Query AmOr122 ; Align 445553 280 150 ; Align 445706 330 3 ; Align 445818 332 132 ; Align 446023 376 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr122 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 230 Query range: 279 -> 389 Target range: 441440 -> 441952 280 : AsnLeuTyrArgLeuTyrLysAlaLeuIleThrMetAspAsnArgIleGluIlePheG : 299 ::!:!!! !:!:!! ||||||:!!:!:||||||:!!:!!!:!:!:||||||.!. HisValSerGlnIleValLysAlaIleValThrMetAsnAspGlnLeuGluIleLeuL 441441 : caTGTTTCACAGATAGTAAAAGCAATAGTGACAATGAATGATCAATTGGAGATACTGT : 441498 300 : lySerThrLeuIleValIleTyrHisLeuMetIleAlaPheTyrAsnAsnHisCysGl : 318 !|||! !:!!||||||! ! !!|||:!!:!!.!! !|||!:!||||||:!!...|| euSerIleMetIleValSerAsnHisIleValPheLeuPhePheAsnAsnTyrAlaGl 441499 : TAAGTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGG : 441555 319 : yGlnLeuIleIleAspSerAsnLeuGlyIlePhe<->Asn{Gl} >>>> Target : 331 |||||||:!:|||:!! !!:! !! !:!!||| .!.{..} 10 yGlnLeuLeuIleAsnHisSerGluGluValPheValGlu{Se}++ 441556 : ACAGTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA{TC}gt............ : 441601 332 : Intron 1 >>>> {u}PheAlaSerThrTrpTyrArgIleProLeuLysAlaGlnL : 345 6 bp {!}!:! !|||||||||||| !!:!!||||||!..||||||| ++{r}TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnL 441602 : .............ag{A}TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGA : 441745 346 : ysLeuLeuLeuPheMetIleLeuArgSerSerMetGlyCysGluIleCysLeuSerGl : 364 ||||||||||||||!!:!!::!!!:!|||!!!!!: !|||:!!!!: !|||||||| ysLeuLeuLeuPheIleMetMetLysSerThrIleProCysLysMetAsnLeuSerGl 441746 : AGTTGTTATTGTTCATCATGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGG : 441802 365 : yLeuPheThrProSerTyrAlaGlyLeuThrSer >>>> Target Intron 2 > : 376 |:!!|||.!!|||!!!||| !|||!!!:!!||| 73 bp yIlePheAlaProCysTyrLysGlyPheSerSer++ 441803 : TATATTTGCTCCGTGTTACAAAGGTTTTTCCTCGgt...................... : 441840 377 : >>> MetMetSerSerSerPheSerTyrCysThrValIleTyrSer : 389 |||!!:|||!!!|||||||||||| !.!!!.!||||||||| ++MetIleSerThrSerPheSerTyrValAlaAlaIleTyrSer 441841 : ...agATGATAAGCACTTCCTTCTCGTATGTCGCAGCGATATATTCG : 441952 vulgar: AmOr122 279 389 . KQ414815.1 441440 441952 + 230 M 50 150 G 0 3 M 1 3 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 44 132 5 0 2 I 0 69 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441441 441952 230 + . gene_id 2 ; sequence AmOr122 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 441441 441598 . + . KQ414815.1 exonerate:protein2genome:local exon 441441 441598 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 441599 441600 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 441599 441704 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 441703 441704 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 441705 441837 . + . KQ414815.1 exonerate:protein2genome:local exon 441705 441837 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 441838 441839 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 441838 441910 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 441909 441910 . + . intron_id 1 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 441911 441952 . + . KQ414815.1 exonerate:protein2genome:local exon 441911 441952 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441441 441952 230 + . alignment_id 2 ; Query AmOr122 ; Align 441441 280 150 ; Align 441594 330 3 ; Align 441706 332 132 ; Align 441911 376 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr122 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 1 -> 51 Target range: 439268 -> 439418 2 : AsnMetAspValPheAspLysGlnTyrArgIleTyrArgIleIleLeuLysIleValG : 21 :!!||||||||||||:!!||||||||||||! !||||||:!!!!:|||...:!::!!| AspMetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuG 439269 : GATATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGCTAG : 439326 22 : lyLeuTrpProTyrAspLysSerIleTyrValTrpIleGlnArgIleCysLeuSerMe : 40 ||||||||||||||..!:!!||||||||| ! |||!!.||||||! !!!:!!! lyLeuTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaTh 439327 : GACTCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTAC : 439383 41 : tTyrPheLeuIleGlyValIlePheGlnIleIle : 51 ! !.!.||| !!:!!||||||:!!:!:!!: rIleMetLeuSerCysIleIlePheGluValMet 439384 : GATTATGCTTTCGTGTATTATATTTGAGGTGATG : 439418 vulgar: AmOr122 1 51 . KQ414815.1 439268 439418 + 142 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439269 439418 142 + . gene_id 3 ; sequence AmOr122 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 439269 439418 . + . KQ414815.1 exonerate:protein2genome:local exon 439269 439418 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 439269 439418 142 + . alignment_id 3 ; Query AmOr122 ; Align 439269 2 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr122 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 1 -> 51 Target range: 443378 -> 443528 2 : AsnMetAspValPheAspLysGlnTyrArgIleTyrArgIleIleLeuLysIleValG : 21 :!!||||||||||||:!!||||||||||||! !||||||:!!!!:|||...:!::!!| AspMetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuG 443379 : GATATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGTTAG : 443436 22 : lyLeuTrpProTyrAspLysSerIleTyrValTrpIleGlnArgIleCysLeuSerMe : 40 ||||||||||||||..!:!!||||||||| ! |||!!.||||||! !!!:!!! lyLeuTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaTh 443437 : GACTCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTAC : 443493 41 : tTyrPheLeuIleGlyValIlePheGlnIleIle : 51 ! !.!.||| !!:!!||||||:!!:!:!!: rIleIleLeuSerCysIleIlePheGluValMet 443494 : GATTATACTTTCGTGTATTATATTTGAGGTGATG : 443528 vulgar: AmOr122 1 51 . KQ414815.1 443378 443528 + 142 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 443379 443528 142 + . gene_id 4 ; sequence AmOr122 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 443379 443528 . + . KQ414815.1 exonerate:protein2genome:local exon 443379 443528 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 443379 443528 142 + . alignment_id 4 ; Query AmOr122 ; Align 443379 2 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr122 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 134 -> 217 Target range: 440462 -> 440711 135 : IleValAlaAlaIleIlePheLeuValAsnProValIleLeuAspLeuArgAsnProL : 154 |||..! !.!!:!:! |||:!! !!|||||| !:!!|||||| ! |||| IleThrIleThrValThrThrLeuLeuTyrProValSerMetAspLeuLeuValProL 440463 : ATCACAATTACCGTGACGACATTATTATACCCAGTATCAATGGATCTGTTAGTACCAT : 440520 155 : euAsnGluSerArgIlePheTyrPheAspLeuLeuPheLeuLeuAspAspGlnSerAl : 173 |||||:!!|||||| ! !|||.!!! ...|||:::||| ..!.!...! euAsnLysSerArgProArgTyrLeuGlyTyrPhePheIleLeuProSerAsnGlnIl 440521 : TGAACAAATCCAGACCTCGTTATCTTGGctacttttttattcttccctCTAATCAAAT : 440577 174 : aTyrIleLysIlePheLeuIleLeuAsnPheMetLeuAsnIleLeuPheGlyLeuLeu : 192 ! ! !! !|||:!!! !!!! !! ! ||| ! !!!! ! ||||||||| eGlnTyrIleAspPheMetThrPheTyrGlyThrLeuValProPheValGlyLeuLeu 440578 : ACAGTATATTGATTTTATGACATTTTATGGGACATTAGTTCCCTTTGTGGGATTATTA : 440634 193 : SerIleThrSerThrGluSerPheThrAsnIlePheSerTyrTyrIleCysArgGlnP : 212 !!!:!!|||!!!|||||||||.!! !!:!|||.!!:!! |||:!: !!!!! !! ThrValThrCysThrGluSerLeuLeuSerIleIleAlaMetTyrValSerSerLeuT 440635 : ACTGTAACATGCACGGAATCGCTTCTTAGTATTATCGCAATGTATGTGAGCAGTTTAT : 440694 213 : heAsnIleValAsnTyr : 217 :!!!.|||..!...||| yrLysIleThrGlyTyr 440695 : ATAAGATTACTGGGTAC : 440711 vulgar: AmOr122 134 217 . KQ414815.1 440462 440711 + 108 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 440463 440711 108 + . gene_id 5 ; sequence AmOr122 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 440463 440711 . + . KQ414815.1 exonerate:protein2genome:local exon 440463 440711 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 440463 440711 108 + . alignment_id 5 ; Query AmOr122 ; Align 440463 135 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr131 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 0 -> 88 Target range: 443381 -> 444040 1 : MetAspValPheAspLysTyrTyrHisThrTyrArgIleValLeuLysIleIleGlyL : 20 ||||||||||||:!!||| ! |||...|||||||||:!!:!!|||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 443382 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGTTAGGAC : 443439 21 : euTrpProTyrAsnAsnSerValTyrValTrpIleGlnArgLeuCysIleSerAlaLe : 39 |||||||||||::!.!.|||:!!||| ! |||!!.|||:!!! .!!:!!.!!:! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 443440 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 443496 40 : uPheLeuGlyAsnIleIlePheGln >>>> Target Intron 1 >>>> IleL : 49 !.!.|||..! !|||||||||:!! 395 bp ||| eIleLeuSerCysIleIlePheGlu++ ++IleA 443497 : TATACTTTCGTGTATTATATTTGAGgt.........................agATAG : 443921 50 : euSerLeuIleArgSerGluIleThrLeuArgAsnCysIleLeuIleLeuSerThrTh : 68 !!!!|||:!! !! !|||! !.!!! ...||| ::: !! !! !..! laThrLeuValSerPheGluArgAlaSerGluAsnIleLeuGlnThrCysPheValCy 443922 : CGACACTCGTTTCTTTTGAAAGAGCATCggaaaatattcttcagaCTTGTTTCGTATG : 443978 69 : rCysProLeuIleIleIleLeuLeuArgTyrIleSerPheIleIlePhePheProMet : 87 ! ! !|||:!::!!.!!!!! !||||||:!!||||||||| ! !||||||.!. sProLeuLeuValLeuPhePheGluArgTyrValSerPheIleCysAsnPheProPhe 443979 : TCCTTTGCTCGTGTTATTCTTCGAGCGATACGTTTCATTCATCTGTAACTTTCCATTT : 444035 88 : Val : 88 ||| Val 444036 : GTA : 444040 vulgar: AmOr131 0 88 . KQ414815.1 443381 444040 + 165 M 47 141 5 0 2 I 0 391 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 443382 444040 165 + . gene_id 1 ; sequence AmOr131 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 443382 443522 . + . KQ414815.1 exonerate:protein2genome:local exon 443382 443522 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 443523 443524 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 443523 443917 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 443916 443917 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 443918 444040 . + . KQ414815.1 exonerate:protein2genome:local exon 443918 444040 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 443382 444040 165 + . alignment_id 1 ; Query AmOr131 ; Align 443382 1 141 ; Align 443918 48 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr131 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 0 -> 88 Target range: 439271 -> 439930 1 : MetAspValPheAspLysTyrTyrHisThrTyrArgIleValLeuLysIleIleGlyL : 20 ||||||||||||:!!||| ! |||...|||||||||:!!:!!|||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 439272 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGCTAGGAC : 439329 21 : euTrpProTyrAsnAsnSerValTyrValTrpIleGlnArgLeuCysIleSerAlaLe : 39 |||||||||||::!.!.|||:!!||| ! |||!!.|||:!!! .!!:!!.!!:! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 439330 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 439386 40 : uPheLeuGlyAsnIleIlePheGln >>>> Target Intron 1 >>>> IleL : 49 !.!.|||..! !|||||||||:!! 395 bp ||| eMetLeuSerCysIleIlePheGlu++ ++IleA 439387 : TATGCTTTCGTGTATTATATTTGAGgt.........................agATAG : 439811 50 : euSerLeuIleArgSerGluIleThrLeuArgAsnCysIleLeuIleLeuSerThrTh : 68 !!!!|||:!! !! !|||! !.!!! ...||| ::: !! !! !..! laThrLeuValSerPheGluArgAlaSerGluAsnIleLeuGlnThrCysPheValCy 439812 : CGACACTCGTTTCTTTTGAAAGAGCATCggaaaatattcttcagaCTTGTTTCGTATG : 439868 69 : rCysProLeuIleIleIleLeuLeuArgTyrIleSerPheIleIlePhePheProMet : 87 ! ! !|||:!::!!.!!!!! !||||||:!!||||||||| ! !|||! !.!. sProLeuLeuValLeuPhePheGluArgTyrValSerPheIleCysAsnPheGlnPhe 439869 : TCCTTTGCTCGTGTTATTCTTCGAGCGATACGTTTCATTCATCTGTAACTTTCAATTT : 439925 88 : Val : 88 ||| Val 439926 : GTA : 439930 vulgar: AmOr131 0 88 . KQ414815.1 439271 439930 + 157 M 47 141 5 0 2 I 0 391 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439272 439930 157 + . gene_id 2 ; sequence AmOr131 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 439272 439412 . + . KQ414815.1 exonerate:protein2genome:local exon 439272 439412 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 439413 439414 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 439413 439807 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 439806 439807 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 439808 439930 . + . KQ414815.1 exonerate:protein2genome:local exon 439808 439930 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 439272 439930 157 + . alignment_id 2 ; Query AmOr131 ; Align 439272 1 141 ; Align 439808 48 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr131 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 279 -> 331 Target range: 441440 -> 441596 280 : AsnLeuHisArgValValAsnAlaIleThrIleLysLysAspGlnLeuGluIleLeuI : 299 ::!:!! !:!:!!|||!!.||||||..!! !! !!!.||||||||||||||||||: HisValSerGlnIleValLysAlaIleValThrMetAsnAspGlnLeuGluIleLeuL 441441 : caTGTTTCACAGATAGTAAAAGCAATAGTGACAATGAATGATCAATTGGAGATACTGT : 441498 300 : leThrLeuIleIlePheAlaAsnHisLeuMetIleMetPheLeuCysAsnTyrAsnGl : 318 !!!:!:!!!!:||| !!::!||||||:!!:!!.!!:!!|||!!! !|||||| || euSerIleMetIleValSerAsnHisIleValPheLeuPhePheAsnAsnTyrAlaGl 441499 : TAAGTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGG : 441555 319 : yGlnIleLeuIleAsnSerAsnGluGluPhePheHisGlu : 331 ||||:!!||||||||| !!:!|||||| !!||| !||| yGlnLeuLeuIleAsnHisSerGluGluValPheValGlu 441556 : ACAGTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA : 441596 vulgar: AmOr131 279 331 . KQ414815.1 441440 441596 + 130 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441441 441596 130 + . gene_id 3 ; sequence AmOr131 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441441 441596 . + . KQ414815.1 exonerate:protein2genome:local exon 441441 441596 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441441 441596 130 + . alignment_id 3 ; Query AmOr131 ; Align 441441 280 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr131 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 279 -> 331 Target range: 445552 -> 445708 280 : AsnLeuHisArgValValAsnAlaIleThrIleLysLysAspGlnLeuGluIleLeuI : 299 ::!:!! !:!:!!|||!!.||||||..!! !! !!!.||||||||||||||||||: HisValSerGlnIleValLysAlaIleValThrMetAsnAspGlnLeuGluIleLeuL 445553 : caTGTTTCACAGATAGTAAAAGCAATAGTGACAATGAATGATCAATTGGAGATACTGT : 445610 300 : leThrLeuIleIlePheAlaAsnHisLeuMetIleMetPheLeuCysAsnTyrAsnGl : 318 !!!:!:!!!!:||| !!::!||||||:!!:!!.!!:!!|||!!! !|||||| || euSerIleMetIleValSerAsnHisIleValPheLeuPhePheAsnAsnTyrAlaGl 445611 : TAAGTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGG : 445667 319 : yGlnIleLeuIleAsnSerAsnGluGluPhePheHisGlu : 331 ||||:!!||||||||| !!:!|||||| !!||| !||| yGlnLeuLeuIleAsnHisSerGluGluValPheValGlu 445668 : ACAGTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA : 445708 vulgar: AmOr131 279 331 . KQ414815.1 445552 445708 + 130 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445553 445708 130 + . gene_id 4 ; sequence AmOr131 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445553 445708 . + . KQ414815.1 exonerate:protein2genome:local exon 445553 445708 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445553 445708 130 + . alignment_id 4 ; Query AmOr131 ; Align 445553 280 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr130 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 332 -> 390 Target range: 445817 -> 446064 333 : TyrAsnSerMetTrpTyrPheMetProLeuLysAlaGlnLysIleLeuLeuLeuIleM : 352 |||||||||! ||||||! !:!:||||||!..|||||||||:!:||||||!!!|||| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 353 : etLeuGlnSerThrThrLysHisAlaPheAsnIleLeuGlyLeuPheThrProCysTy : 371 ||:!!:!!||||||! ! ! ! !.!!|||:!!! !|||:!!|||.!!|||||||| etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 372 : rAlaGlyPheSerThr >>>> Target Intron 1 >>>> MetLeuSerSerS : 381 | !|||||||||:!! 73 bp |||:!!|||!!!| rLysGlyPheSerSer++ ++MetIleSerThrS 445933 : CAAAGGTTTTTCCTCGgt.........................agATGATAAGCACTT : 446035 382 : erPheSerTyrPheThrLeuMetTyrSer : 390 ||||||||||| !!||| !!!:|||||| erPheSerTyrValThrAlaIleTyrSer 446036 : CTTTCTCGTATGTCACAGCGATATATTCG : 446064 vulgar: AmOr130 332 390 . KQ414815.1 445817 446064 + 180 M 44 132 5 0 2 I 0 69 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 446064 180 + . gene_id 1 ; sequence AmOr130 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 445818 445949 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445949 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445950 445951 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445950 446022 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 446021 446022 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 446023 446064 . + . KQ414815.1 exonerate:protein2genome:local exon 446023 446064 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 446064 180 + . alignment_id 1 ; Query AmOr130 ; Align 445818 333 132 ; Align 446023 377 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr130 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 332 -> 390 Target range: 441705 -> 441952 333 : TyrAsnSerMetTrpTyrPheMetProLeuLysAlaGlnLysIleLeuLeuLeuIleM : 352 |||||||||! ||||||! !:!:||||||!..|||||||||:!:||||||!!!|||| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 353 : etLeuGlnSerThrThrLysHisAlaPheAsnIleLeuGlyLeuPheThrProCysTy : 371 ||:!!:!!||||||! ! ! ! !.!.|||:!!! !|||:!!|||.!!|||||||| etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 372 : rAlaGlyPheSerThr >>>> Target Intron 1 >>>> MetLeuSerSerS : 381 | !|||||||||:!! 73 bp |||:!!|||!!!| rLysGlyPheSerSer++ ++MetIleSerThrS 441821 : CAAAGGTTTTTCCTCGgt.........................agATGATAAGCACTT : 441923 382 : erPheSerTyrPheThrLeuMetTyrSer : 390 ||||||||||| !!.!! !!!:|||||| erPheSerTyrValAlaAlaIleTyrSer 441924 : CCTTCTCGTATGTCGCAGCGATATATTCG : 441952 vulgar: AmOr130 332 390 . KQ414815.1 441705 441952 + 175 M 44 132 5 0 2 I 0 69 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441952 175 + . gene_id 2 ; sequence AmOr130 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 441706 441837 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441837 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 441838 441839 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 441838 441910 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 441909 441910 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 441911 441952 . + . KQ414815.1 exonerate:protein2genome:local exon 441911 441952 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441952 175 + . alignment_id 2 ; Query AmOr130 ; Align 441706 333 132 ; Align 441911 377 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr130 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 128 -> 222 Target range: 444562 -> 444844 129 : ThrTyrThrThrIleValIlePheIleIleTyrValSerTyrProIleIleLeuAspP : 148 .!!||| ! !|||..!|||.!!:!:! :!!! !||||||:!! !:!!|||. AlaTyrPheGlyIleThrIleIleValThrThrLeuLeuTyrProValSerMetAspL 444563 : GCTTACTTTGGGATCACAATTATCGTGACGACATTATTATACCCAGTATCAATGGATC : 444620 149 : heMetIleProLeuAsnGluSerArgThrHisPheIleTyrTyrIleThrThrPheSe : 167 !.:!::!!|||||||||.!.|||||| !!!.!!:!:!! !|||.!!..!! !.!! ! euLeuValProLeuAsnAsnSerArgProArgTyrLeuGlyTyrPheValIleLeuPr 444621 : TGTTAGTACCTTTGAACAATTCCAGACCTCGTTATCTTGGCTACTTTGTTATTCTTCC : 444677 168 : rHisAsnGlnSerIleTyrLeuAspIleLeuAspPheAsnPheMetPheThrGlyIle : 186 ! !||||||! ! |||:!!|||.!!:!! ||| !! ! !!...! !.!! oSerAsnGlnIleGlnTyrIleAspPheMetThrPheTyrGlyThrLeuValProPhe 444678 : CTCTAATCAAATACAGTATATTGATTTTATGACATTTTATGGGACATTAGTTCCCTTT : 444734 187 : PheGlyLeuLeuSerValAlaCysSerGluSerIleThrGlyIleTyrSerTyrTyrI : 206 ! |||||||||!!!|||||||||!!!||||||:!! !.!!||| !:!! |||: ValGlyLeuLeuThrValAlaCysThrGluSerLeuLeuSerIleSerAlaMetTyrL 444735 : GTGGGATTATTAACTGTAGCATGCACGGAATCGCTTCTTAGTATTAGCGCAATGTATC : 444794 207 : leCysIleLeuLeuLysIleValSerTyrArgIleGlnLysIleIleMet : 222 !:|||! !|||! !||||||..!.!!||| ! !||| ! !|||::: euCysSerLeuTyrLysIleThrGlyTyrValSerGlnTyrTyrIleVal 444795 : TGTGCAGTTTATATAAGATTACTGGGTACGTATCTCAATACTATatcgta : 444844 vulgar: AmOr130 128 222 . KQ414815.1 444562 444844 + 170 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 444563 444844 170 + . gene_id 3 ; sequence AmOr130 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 444563 444844 . + . KQ414815.1 exonerate:protein2genome:local exon 444563 444844 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 444563 444844 170 + . alignment_id 3 ; Query AmOr130 ; Align 444563 129 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr130 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 128 -> 215 Target range: 440450 -> 440711 129 : ThrTyrThrThrIleValIlePheIleIleTyrValSerTyrProIleIleLeuAspP : 148 .!!||| ! !|||..!||| !:!:! :!!! !||||||:!! !:!!|||. AlaTyrPheGlyIleThrIleThrValThrThrLeuLeuTyrProValSerMetAspL 440451 : GCTTACTTTGGGATCACAATTACCGTGACGACATTATTATACCCAGTATCAATGGATC : 440508 149 : heMetIleProLeuAsnGluSerArgThrHisPheIleTyrTyrIleThrThrPheSe : 167 !.:!::!!|||||||||:!!|||||| !!!.!!:!:!! |||... ... euLeuValProLeuAsnLysSerArgProArgTyrLeuGlyTyrPhePheIleLeuPr 440509 : TGTTAGTACCATTGAACAAATCCAGACCTCGTTATCTTGGctacttttttattcttcc : 440565 168 : rHisAsnGlnSerIleTyrLeuAspIleLeuAspPheAsnPheMetPheThrGlyIle : 186 !||||||! ! |||:!!|||.!!:!! ||| !! ! !!...! !.!! oSerAsnGlnIleGlnTyrIleAspPheMetThrPheTyrGlyThrLeuValProPhe 440566 : ctCTAATCAAATACAGTATATTGATTTTATGACATTTTATGGGACATTAGTTCCCTTT : 440622 187 : PheGlyLeuLeuSerValAlaCysSerGluSerIleThrGlyIleTyrSerTyrTyrI : 206 ! |||||||||!!!|||.!!|||!!!||||||:!! !.!!||| !:!! |||: ValGlyLeuLeuThrValThrCysThrGluSerLeuLeuSerIleIleAlaMetTyrV 440623 : GTGGGATTATTAACTGTAACATGCACGGAATCGCTTCTTAGTATTATCGCAATGTATG : 440682 207 : leCysIleLeuLeuLysIleValSerTyr : 215 !: !!! !|||! !||||||..!.!!||| alSerSerLeuTyrLysIleThrGlyTyr 440683 : TGAGCAGTTTATATAAGATTACTGGGTAC : 440711 vulgar: AmOr130 128 215 . KQ414815.1 440450 440711 + 153 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 440451 440711 153 + . gene_id 4 ; sequence AmOr130 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 440451 440711 . + . KQ414815.1 exonerate:protein2genome:local exon 440451 440711 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 440451 440711 153 + . alignment_id 4 ; Query AmOr130 ; Align 440451 129 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr130 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 0 -> 51 Target range: 439271 -> 439424 1 : MetAsnValPheAspAsnGlnTyrArgIleTyrArgIleIleLeuLysIleIleGlyL : 20 |||:!!||||||:!!!!.|||||||||! !||||||:!!!!:|||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 439272 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGCTAGGAC : 439329 21 : euTrpProTyrAspAsnSerIleTyrValTrpIleGlnArgLeuCysLeuLeuSerTy : 39 |||||||||||..!.!.||||||||| ! |||!!.|||:!!! !!! !!!! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 439330 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 439386 40 : rPhePheAlaAsnIleIlePheGlnIleValSerLeu : 51 !.!..!!:!! !|||||||||:!!:!::!!..!:!! eMetLeuSerCysIleIlePheGluValMetGlnIle 439387 : TATGCTTTCGTGTATTATATTTGAGGTGATGCAAATA : 439424 vulgar: AmOr130 0 51 . KQ414815.1 439271 439424 + 131 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439272 439424 131 + . gene_id 5 ; sequence AmOr130 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 439272 439424 . + . KQ414815.1 exonerate:protein2genome:local exon 439272 439424 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 439272 439424 131 + . alignment_id 5 ; Query AmOr130 ; Align 439272 1 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr130 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 0 -> 51 Target range: 443381 -> 443534 1 : MetAsnValPheAspAsnGlnTyrArgIleTyrArgIleIleLeuLysIleIleGlyL : 20 |||:!!||||||:!!!!.|||||||||! !||||||:!!!!:|||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 443382 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGTTAGGAC : 443439 21 : euTrpProTyrAspAsnSerIleTyrValTrpIleGlnArgLeuCysLeuLeuSerTy : 39 |||||||||||..!.!.||||||||| ! |||!!.|||:!!! !!! !!!! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 443440 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 443496 40 : rPhePheAlaAsnIleIlePheGlnIleValSerLeu : 51 !.!..!!:!! !|||||||||:!!:!::!!..!:!! eIleLeuSerCysIleIlePheGluValMetGlnIle 443497 : TATACTTTCGTGTATTATATTTGAGGTGATGCAAATA : 443534 vulgar: AmOr130 0 51 . KQ414815.1 443381 443534 + 131 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 443382 443534 131 + . gene_id 6 ; sequence AmOr130 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 443382 443534 . + . KQ414815.1 exonerate:protein2genome:local exon 443382 443534 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 443382 443534 131 + . alignment_id 6 ; Query AmOr130 ; Align 443382 1 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr126 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 256 Query range: 278 -> 389 Target range: 441440 -> 441952 279 : AsnLeuTyrArgLeuTyrLysAlaLeuIleThrMetAspAsnArgMetGluIleLeuG : 298 ::!:!!! !:!:!! ||||||:!!:!:||||||:!!:!!!:!:!!||||||||| HisValSerGlnIleValLysAlaIleValThrMetAsnAspGlnLeuGluIleLeuL 441441 : caTGTTTCACAGATAGTAAAAGCAATAGTGACAATGAATGATCAATTGGAGATACTGT : 441498 299 : lySerIleLeuIleValIleTyrHisLeuMetMetAlaLeuTyrAsnAsnHisTyrGl : 317 !||||||:!!||||||! ! !!|||:!!:!!.!. !!!!!:!||||||:!! || euSerIleMetIleValSerAsnHisIleValPheLeuPhePheAsnAsnTyrAlaGl 441499 : TAAGTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGG : 441555 318 : yGlnLeuIleIleAsnSerAsnHisGlyIlePheAsnGlu{Le} >>>> Target : 331 |||||||:!:|||||| !!:!.!.! !:!!||| !|||{! } 10 yGlnLeuLeuIleAsnHisSerGluGluValPheValGlu{Se}++ 441556 : ACAGTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA{TC}gt............ : 441601 332 : Intron 1 >>>> {u}CysAlaSerThrTrpTyrArgIleProLeuLysAlaGlnL : 345 6 bp {!}! ! !|||||||||||| !!:!!||||||!..||||||| ++{r}TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnL 441602 : .............ag{A}TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGA : 441745 346 : ysLeuLeuLeuPheMetIleLeuArgSerSerMetGlyCysGluIleCysLeuSerGl : 364 ||||||||||||||!!:!!::!!!:!|||!!!!!: !|||:!!!!: !|||||||| ysLeuLeuLeuPheIleMetMetLysSerThrIleProCysLysMetAsnLeuSerGl 441746 : AGTTGTTATTGTTCATCATGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGG : 441802 365 : yLeuPheThrProSerTyrAlaGlyLeuThrSer >>>> Target Intron 2 > : 376 |:!!|||.!!|||!!!||| !|||!!!:!!||| 73 bp yIlePheAlaProCysTyrLysGlyPheSerSer++ 441803 : TATATTTGCTCCGTGTTACAAAGGTTTTTCCTCGgt...................... : 441840 377 : >>> MetMetSerSerSerPheSerTyrCysAlaValIleTyrSer : 389 |||!!:|||!!!|||||||||||| !|||!.!||||||||| ++MetIleSerThrSerPheSerTyrValAlaAlaIleTyrSer 441841 : ...agATGATAAGCACTTCCTTCTCGTATGTCGCAGCGATATATTCG : 441952 vulgar: AmOr126 278 389 . KQ414815.1 441440 441952 + 256 M 52 156 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 44 132 5 0 2 I 0 69 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441441 441952 256 + . gene_id 1 ; sequence AmOr126 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 441441 441598 . + . KQ414815.1 exonerate:protein2genome:local exon 441441 441598 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 441599 441600 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 441599 441704 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 441703 441704 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 441705 441837 . + . KQ414815.1 exonerate:protein2genome:local exon 441705 441837 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 441838 441839 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 441838 441910 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 441909 441910 . + . intron_id 1 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 441911 441952 . + . KQ414815.1 exonerate:protein2genome:local exon 441911 441952 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441441 441952 256 + . alignment_id 1 ; Query AmOr126 ; Align 441441 279 156 ; Align 441706 332 132 ; Align 441911 376 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr126 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 256 Query range: 278 -> 389 Target range: 445552 -> 446064 279 : AsnLeuTyrArgLeuTyrLysAlaLeuIleThrMetAspAsnArgMetGluIleLeuG : 298 ::!:!!! !:!:!! ||||||:!!:!:||||||:!!:!!!:!:!!||||||||| HisValSerGlnIleValLysAlaIleValThrMetAsnAspGlnLeuGluIleLeuL 445553 : caTGTTTCACAGATAGTAAAAGCAATAGTGACAATGAATGATCAATTGGAGATACTGT : 445610 299 : lySerIleLeuIleValIleTyrHisLeuMetMetAlaLeuTyrAsnAsnHisTyrGl : 317 !||||||:!!||||||! ! !!|||:!!:!!.!. !!!!!:!||||||:!! || euSerIleMetIleValSerAsnHisIleValPheLeuPhePheAsnAsnTyrAlaGl 445611 : TAAGTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGG : 445667 318 : yGlnLeuIleIleAsnSerAsnHisGlyIlePheAsnGlu{Le} >>>> Target : 331 |||||||:!:|||||| !!:!.!.! !:!!||| !|||{! } 10 yGlnLeuLeuIleAsnHisSerGluGluValPheValGlu{Se}++ 445668 : ACAGTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA{TC}gt............ : 445713 332 : Intron 1 >>>> {u}CysAlaSerThrTrpTyrArgIleProLeuLysAlaGlnL : 345 6 bp {!}! ! !|||||||||||| !!:!!||||||!..||||||| ++{r}TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnL 445714 : .............ag{A}TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAA : 445857 346 : ysLeuLeuLeuPheMetIleLeuArgSerSerMetGlyCysGluIleCysLeuSerGl : 364 ||||||||||||||!!:!!::!!!:!|||!!!!!: !|||:!!||| !|||||||| ysLeuLeuLeuPheIleMetMetLysSerThrIleProCysLysIleAsnLeuSerGl 445858 : AGTTGTTATTGTTCATCATGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGG : 445914 365 : yLeuPheThrProSerTyrAlaGlyLeuThrSer >>>> Target Intron 2 > : 376 |:!!|||.!!|||!!!||| !|||!!!:!!||| 73 bp yIlePheAlaProCysTyrLysGlyPheSerSer++ 445915 : TATATTTGCTCCGTGTTACAAAGGTTTTTCCTCGgt...................... : 445952 377 : >>> MetMetSerSerSerPheSerTyrCysAlaValIleTyrSer : 389 |||!!:|||!!!|||||||||||| !.!!!.!||||||||| ++MetIleSerThrSerPheSerTyrValThrAlaIleTyrSer 445953 : ...agATGATAAGCACTTCTTTCTCGTATGTCACAGCGATATATTCG : 446064 vulgar: AmOr126 278 389 . KQ414815.1 445552 446064 + 256 M 52 156 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 44 132 5 0 2 I 0 69 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445553 446064 256 + . gene_id 2 ; sequence AmOr126 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 445553 445710 . + . KQ414815.1 exonerate:protein2genome:local exon 445553 445710 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445711 445712 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445711 445816 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 445815 445816 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 445817 445949 . + . KQ414815.1 exonerate:protein2genome:local exon 445817 445949 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445950 445951 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445950 446022 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 446021 446022 . + . intron_id 1 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 446023 446064 . + . KQ414815.1 exonerate:protein2genome:local exon 446023 446064 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445553 446064 256 + . alignment_id 2 ; Query AmOr126 ; Align 445553 279 156 ; Align 445818 332 132 ; Align 446023 376 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr126 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 0 -> 48 Target range: 439271 -> 439415 1 : MetAsnValPheAspAsnGlnTyrArgThrTyrArgIleIleLeuLysIleValGlyL : 20 |||:!!||||||:!!!!.||||||||||||||||||:!!!!:|||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 439272 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGCTAGGAC : 439329 21 : euTrpProTyrAspAsnSerIleTyrValArgIleGlnArgIleCysValLeuIleTy : 39 |||||||||||..!.!.||||||||| !! !|||!!.||||||! !! !! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 439330 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 439386 40 : rPheLeuIleGlyValLeuValGlnIle : 48 !.!.||| !!:!!:!! !!:!!:!: eMetLeuSerCysIleIlePheGluVal 439387 : TATGCTTTCGTGTATTATATTTGAGGTG : 439415 vulgar: AmOr126 0 48 . KQ414815.1 439271 439415 + 124 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439272 439415 124 + . gene_id 3 ; sequence AmOr126 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 439272 439415 . + . KQ414815.1 exonerate:protein2genome:local exon 439272 439415 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 439272 439415 124 + . alignment_id 3 ; Query AmOr126 ; Align 439272 1 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr126 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 0 -> 48 Target range: 443381 -> 443525 1 : MetAsnValPheAspAsnGlnTyrArgThrTyrArgIleIleLeuLysIleValGlyL : 20 |||:!!||||||:!!!!.||||||||||||||||||:!!!!:|||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 443382 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGTTAGGAC : 443439 21 : euTrpProTyrAspAsnSerIleTyrValArgIleGlnArgIleCysValLeuIleTy : 39 |||||||||||..!.!.||||||||| !! !|||!!.||||||! !! !! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 443440 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 443496 40 : rPheLeuIleGlyValLeuValGlnIle : 48 !.!.||| !!:!!:!! !!:!!:!: eIleLeuSerCysIleIlePheGluVal 443497 : TATACTTTCGTGTATTATATTTGAGGTG : 443525 vulgar: AmOr126 0 48 . KQ414815.1 443381 443525 + 124 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 443382 443525 124 + . gene_id 4 ; sequence AmOr126 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 443382 443525 . + . KQ414815.1 exonerate:protein2genome:local exon 443382 443525 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 443382 443525 124 + . alignment_id 4 ; Query AmOr126 ; Align 443382 1 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr138NP Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 85 -> 167 Target range: 440465 -> 440711 86 : ValLeuSerIleIlePheIleLeuTyrProMetThrLeuAspPheIleMetProLeuA : 105 ..!:!!!!!:!:! :!!|||||||||:!::!!:!!|||.!.:!!:!:||||||| ThrIleThrValThrThrLeuLeuTyrProValSerMetAspLeuLeuValProLeuA 440466 : ACAATTACCGTGACGACATTATTATACCCAGTATCAATGGATCTGTTAGTACCATTGA : 440523 106 : snLysThrArgIleHisIleIleHisTyrIleThrIlePheProTyrAsnArgThrIl : 124 |||||:!!||| !!.! !:!! |||... |||...||| !|||!:!! ! snLysSerArgProArgTyrLeuGlyTyrPhePheIleLeuProSerAsnGlnIleGl 440524 : ACAAATCCAGACCTCGTTATCTTGGctacttttttattcttccctCTAATCAAATACA : 440580 125 : eTyrLeuAspIleLeuSerLeuAsnPheMetPheValGlyIlePheGlySerLeuSer : 143 |||:!!|||.!!:!!!!!!!! !! ! !!.||| !.!! ! |||! !|||!!! nTyrIleAspPheMetThrPheTyrGlyThrLeuValProPheValGlyLeuLeuThr 440581 : GTATATTGATTTTATGACATTTTATGGGACATTAGTTCCCTTTGTGGGATTATTAACT : 440637 144 : LeuAlaCysThrGluSerIlePheGlyLeuTyrCysPheHisAlaAsnIleLeuPheL : 163 :!!.!!||||||||||||:!!.!!.!!:!! !....!.:!!!.!!:!! !|||!:!| ValThrCysThrGluSerLeuLeuSerIleIleAlaMetTyrValSerSerLeuTyrL 440638 : GTAACATGCACGGAATCGCTTCTTAGTATTATCGCAATGTATGTGAGCAGTTTATATA : 440697 164 : ysIleIleSerTyr : 167 |||||! !.!!||| ysIleThrGlyTyr 440698 : AGATTACTGGGTAC : 440711 vulgar: AmOr138NP 85 167 . KQ414815.1 440465 440711 + 149 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 440466 440711 149 + . gene_id 1 ; sequence AmOr138NP ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 440466 440711 . + . KQ414815.1 exonerate:protein2genome:local exon 440466 440711 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 440466 440711 149 + . alignment_id 1 ; Query AmOr138NP ; Align 440466 86 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr138NP Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 85 -> 167 Target range: 444577 -> 444823 86 : ValLeuSerIleIlePheIleLeuTyrProMetThrLeuAspPheIleMetProLeuA : 105 ..!:!!! !:!:! :!!|||||||||:!::!!:!!|||.!.:!!:!:||||||| ThrIleIleValThrThrLeuLeuTyrProValSerMetAspLeuLeuValProLeuA 444578 : ACAATTATCGTGACGACATTATTATACCCAGTATCAATGGATCTGTTAGTACCTTTGA : 444635 106 : snLysThrArgIleHisIleIleHisTyrIleThrIlePheProTyrAsnArgThrIl : 124 ||!!.:!!||| !!.! !:!! !|||.!!..!|||.!!|||! !|||!:!! ! snAsnSerArgProArgTyrLeuGlyTyrPheValIleLeuProSerAsnGlnIleGl 444636 : ACAATTCCAGACCTCGTTATCTTGGCTACTTTGTTATTCTTCCCTCTAATCAAATACA : 444692 125 : eTyrLeuAspIleLeuSerLeuAsnPheMetPheValGlyIlePheGlySerLeuSer : 143 |||:!!|||.!!:!!!!!!!! !! ! !!.||| !.!! ! |||! !|||!!! nTyrIleAspPheMetThrPheTyrGlyThrLeuValProPheValGlyLeuLeuThr 444693 : GTATATTGATTTTATGACATTTTATGGGACATTAGTTCCCTTTGTGGGATTATTAACT : 444749 144 : LeuAlaCysThrGluSerIlePheGlyLeuTyrCysPheHisAlaAsnIleLeuPheL : 163 :!!|||||||||||||||:!!.!!.!!:!! !....!.:!! ! !! !|||!:!| ValAlaCysThrGluSerLeuLeuSerIleSerAlaMetTyrLeuCysSerLeuTyrL 444750 : GTAGCATGCACGGAATCGCTTCTTAGTATTAGCGCAATGTATCTGTGCAGTTTATATA : 444809 164 : ysIleIleSerTyr : 167 |||||! !.!!||| ysIleThrGlyTyr 444810 : AGATTACTGGGTAC : 444823 vulgar: AmOr138NP 85 167 . KQ414815.1 444577 444823 + 141 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 444578 444823 141 + . gene_id 2 ; sequence AmOr138NP ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 444578 444823 . + . KQ414815.1 exonerate:protein2genome:local exon 444578 444823 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 444578 444823 141 + . alignment_id 2 ; Query AmOr138NP ; Align 444578 86 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr138NP Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 234 -> 283 Target range: 441449 -> 441596 235 : ArgLeuValAsnAlaIleIleValLysLysAspGlnLeuGluMetLeuIleSerPheM : 254 !:!:!!|||!!.||||||:!:..!! !!!.||||||||||||!!:|||:!!|||.!!| GlnIleValLysAlaIleValThrMetAsnAspGlnLeuGluIleLeuLeuSerIleM 441450 : CAGATAGTAAAAGCAATAGTGACAATGAATGATCAATTGGAGATACTGTTAAGTATCA : 441507 255 : etIleLeuMetAlaGlnLeuIleIleThrPheLeuCysAsnTyrAsnAsnGlnIleLe : 273 |||||:!!! !!!.:!!:!:.!! !|||!!! !|||||| ...|||:!!|| etIleValSerAsnHisIleValPheLeuPhePheAsnAsnTyrAlaGlyGlnLeuLe 441508 : TGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGGACAGTTACT : 441564 274 : uIleAspAsnSerGlnGluLeuLeuAspGlu : 283 ||||:!!:!!|||:!!|||:!!!!!! !||| uIleAsnHisSerGluGluValPheValGlu 441565 : GATAAACCATAGCGAAGAAGTCTTCGTTGAA : 441596 vulgar: AmOr138NP 234 283 . KQ414815.1 441449 441596 + 104 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441450 441596 104 + . gene_id 3 ; sequence AmOr138NP ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441450 441596 . + . KQ414815.1 exonerate:protein2genome:local exon 441450 441596 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441450 441596 104 + . alignment_id 3 ; Query AmOr138NP ; Align 441450 235 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr138NP Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 234 -> 283 Target range: 445561 -> 445708 235 : ArgLeuValAsnAlaIleIleValLysLysAspGlnLeuGluMetLeuIleSerPheM : 254 !:!:!!|||!!.||||||:!:..!! !!!.||||||||||||!!:|||:!!|||.!!| GlnIleValLysAlaIleValThrMetAsnAspGlnLeuGluIleLeuLeuSerIleM 445562 : CAGATAGTAAAAGCAATAGTGACAATGAATGATCAATTGGAGATACTGTTAAGTATCA : 445619 255 : etIleLeuMetAlaGlnLeuIleIleThrPheLeuCysAsnTyrAsnAsnGlnIleLe : 273 |||||:!!! !!!.:!!:!:.!! !|||!!! !|||||| ...|||:!!|| etIleValSerAsnHisIleValPheLeuPhePheAsnAsnTyrAlaGlyGlnLeuLe 445620 : TGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGGACAGTTACT : 445676 274 : uIleAspAsnSerGlnGluLeuLeuAspGlu : 283 ||||:!!:!!|||:!!|||:!!!!!! !||| uIleAsnHisSerGluGluValPheValGlu 445677 : GATAAACCATAGCGAAGAAGTCTTCGTTGAA : 445708 vulgar: AmOr138NP 234 283 . KQ414815.1 445561 445708 + 104 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445562 445708 104 + . gene_id 4 ; sequence AmOr138NP ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445562 445708 . + . KQ414815.1 exonerate:protein2genome:local exon 445562 445708 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445562 445708 104 + . alignment_id 4 ; Query AmOr138NP ; Align 445562 235 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr137CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 0 -> 82 Target range: 439271 -> 439762 1 : MetAspIlePheAspLysArgTyrCysThrTyrArgThrMetLeuLysIleValGlyL : 20 ||||||:!:|||:!!|||!:!||| ! ||||||||| !||||||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 439272 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGCTAGGAC : 439329 21 : euTrpProTyrAsnAsnSerIleTyrValTrpIleGlnArgLeuTrpLeuLeuIlePh : 39 |||||||||||::!.!.||||||||| ! |||!!.|||:!!! !!!! !! .! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 439330 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 439386 40 : ePheLeuGlyAsnIleIlePheGlnVal{Va} >>>> Target Intron 1 >>> : 49 !.!.|||..! !|||||||||:!!|||{:!} 245 bp eMetLeuSerCysIleIlePheGluVal{Il}+- 439387 : TATGCTTTCGTGTATTATATTTGAGGTG{AT}gc........................ : 439420 50 : > {l}SerLeuSerSerGluIleThrLeuArgAsnCysIleLeuIleLeuSerLeuI : 67 {!}! !:!!..!!.!! !:!!|||:!!..! ||| |||||||||||||||| ++{e}TyrValGluLysValValThrIleGluLeuCysSerLeuIleLeuSerLeuI 439421 : .ag{A}TATGTAGAAAAAGTGGTTACAATAGAATTGTGTTCGCTGATTCTCTCCTTGA : 439715 68 : lePheProLeuThrIleIleLeuValArgTyrValSerCysValIle : 82 ||.!! !! !!.!|||::: ::: ::::::|||:::||| leLeuAsnHisAsnIleLeuAsnGluLysAsnLeuThrCysLeuIle 439716 : TTCTTAATCATAACATActtaacgaaaaaaatttaacgtgtttaatt : 439762 vulgar: AmOr137CTE 0 82 . KQ414815.1 439271 439762 + 148 M 48 144 S 0 2 5 0 2 I 0 241 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439272 439762 148 + . gene_id 1 ; sequence AmOr137CTE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 439272 439417 . + . KQ414815.1 exonerate:protein2genome:local exon 439272 439417 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 439418 439419 . + . intron_id 1 ; splice_site "GC" KQ414815.1 exonerate:protein2genome:local intron 439418 439662 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 439661 439662 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 439663 439762 . + . KQ414815.1 exonerate:protein2genome:local exon 439663 439762 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 439272 439762 148 + . alignment_id 1 ; Query AmOr137CTE ; Align 439272 1 144 ; Align 439664 50 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr137CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 0 -> 82 Target range: 443381 -> 443872 1 : MetAspIlePheAspLysArgTyrCysThrTyrArgThrMetLeuLysIleValGlyL : 20 ||||||:!:|||:!!|||!:!||| ! ||||||||| !||||||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 443382 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGTTAGGAC : 443439 21 : euTrpProTyrAsnAsnSerIleTyrValTrpIleGlnArgLeuTrpLeuLeuIlePh : 39 |||||||||||::!.!.||||||||| ! |||!!.|||:!!! !!!! !! .! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 443440 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 443496 40 : ePheLeuGlyAsnIleIlePheGlnVal{Va} >>>> Target Intron 1 >>> : 49 !.!.|||..! !|||||||||:!!|||{:!} 245 bp eIleLeuSerCysIleIlePheGluVal{Il}+- 443497 : TATACTTTCGTGTATTATATTTGAGGTG{AT}gc........................ : 443530 50 : > {l}SerLeuSerSerGluIleThrLeuArgAsnCysIleLeuIleLeuSerLeuI : 67 {!}! !:!!..!!.!! !:!!|||:!!..! ||| |||||||||||||||| ++{e}TyrValGluLysValValThrIleGluLeuCysSerLeuIleLeuSerLeuI 443531 : .ag{A}TATGTAGAAAAAGTGGTTACAATAGAATTGTGTTCGCTGATTCTCTCCTTGA : 443825 68 : lePheProLeuThrIleIleLeuValArgTyrValSerCysValIle : 82 ||.!! !! !!.!|||::: ::: ::::::|||:::||| leLeuAsnHisAsnIleLeuAsnGluLysAsnLeuThrCysLeuIle 443826 : TTCTTAATCATAACATActtaacgaaaaaaatttaacgtgtttaatt : 443872 vulgar: AmOr137CTE 0 82 . KQ414815.1 443381 443872 + 148 M 48 144 S 0 2 5 0 2 I 0 241 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 443382 443872 148 + . gene_id 2 ; sequence AmOr137CTE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 443382 443527 . + . KQ414815.1 exonerate:protein2genome:local exon 443382 443527 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 443528 443529 . + . intron_id 1 ; splice_site "GC" KQ414815.1 exonerate:protein2genome:local intron 443528 443772 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 443771 443772 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 443773 443872 . + . KQ414815.1 exonerate:protein2genome:local exon 443773 443872 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 443382 443872 148 + . alignment_id 2 ; Query AmOr137CTE ; Align 443382 1 144 ; Align 443774 50 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr137CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 132 -> 214 Target range: 444577 -> 444823 133 : AlaLeuSerIleIlePheIleLeuTyrProMetThrLeuAspPheIleMetProLeuA : 152 .!!:!!! !:!:! :!!|||||||||:!::!!:!!|||.!.:!!:!:||||||| ThrIleIleValThrThrLeuLeuTyrProValSerMetAspLeuLeuValProLeuA 444578 : ACAATTATCGTGACGACATTATTATACCCAGTATCAATGGATCTGTTAGTACCTTTGA : 444635 153 : snArgThrArgIleArgIleIleHisTyrIleThrIlePheProTyrAsnArgThrMe : 171 ||!.!:!!||| !||| !:!! !|||.!!..!|||.!!|||! !|||!:!! !.. snAsnSerArgProArgTyrLeuGlyTyrPheValIleLeuProSerAsnGlnIleGl 444636 : ACAATTCCAGACCTCGTTATCTTGGCTACTTTGTTATTCTTCCCTCTAATCAAATACA : 444692 172 : tTyrLeuAspIleLeuSerLeuAsnPheMetPheValGlyIlePheGlySerLeuSer : 190 !|||:!!|||.!!:!!!!!!!! !! ! !!.||| !.!! ! |||! !|||!!! nTyrIleAspPheMetThrPheTyrGlyThrLeuValProPheValGlyLeuLeuThr 444693 : GTATATTGATTTTATGACATTTTATGGGACATTAGTTCCCTTTGTGGGATTATTAACT : 444749 191 : LeuAlaCysThrGluSerIlePheGlyLeuTyrCysPheHisAlaSerIleLeuPheL : 210 :!!|||||||||||||||:!!.!!.!!:!! !....!.:!! !!!!! !|||!:!| ValAlaCysThrGluSerLeuLeuSerIleSerAlaMetTyrLeuCysSerLeuTyrL 444750 : GTAGCATGCACGGAATCGCTTCTTAGTATTAGCGCAATGTATCTGTGCAGTTTATATA : 444809 211 : ysIleIleIleTyr : 214 |||||! ! ||| ysIleThrGlyTyr 444810 : AGATTACTGGGTAC : 444823 vulgar: AmOr137CTE 132 214 . KQ414815.1 444577 444823 + 147 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 444578 444823 147 + . gene_id 3 ; sequence AmOr137CTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 444578 444823 . + . KQ414815.1 exonerate:protein2genome:local exon 444578 444823 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 444578 444823 147 + . alignment_id 3 ; Query AmOr137CTE ; Align 444578 133 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr135PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 0 -> 51 Target range: 439271 -> 439424 1 : MetAspValPheAspLysGlnTyrHisSerTyrArgThrValMetLysIleValGlyL : 20 ||||||||||||:!!|||||||||...!!!|||||| !:!!:!:...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 439272 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGCTAGGAC : 439329 21 : euTrpProTyrAsnAsnSerIleTyrIleTrpIleGlnArgLeuLeuLeuLeuThrPh : 39 |||||||||||::!.!.|||||||||! ! |||!!.|||:!!! !!!! !|||.! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 439330 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 439386 40 : ePheLeuGlyAsnValIlePheGlnIleValSerLeu : 51 !.!.|||..! !:!!||||||:!!:!::!!..!:!! eMetLeuSerCysIleIlePheGluValMetGlnIle 439387 : TATGCTTTCGTGTATTATATTTGAGGTGATGCAAATA : 439424 vulgar: AmOr135PSE 0 51 . KQ414815.1 439271 439424 + 139 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439272 439424 139 + . gene_id 1 ; sequence AmOr135PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 439272 439424 . + . KQ414815.1 exonerate:protein2genome:local exon 439272 439424 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 439272 439424 139 + . alignment_id 1 ; Query AmOr135PSE ; Align 439272 1 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr135PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 0 -> 51 Target range: 443381 -> 443534 1 : MetAspValPheAspLysGlnTyrHisSerTyrArgThrValMetLysIleValGlyL : 20 ||||||||||||:!!|||||||||...!!!|||||| !:!!:!:...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 443382 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGTTAGGAC : 443439 21 : euTrpProTyrAsnAsnSerIleTyrIleTrpIleGlnArgLeuLeuLeuLeuThrPh : 39 |||||||||||::!.!.|||||||||! ! |||!!.|||:!!! !!!! !|||.! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 443440 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 443496 40 : ePheLeuGlyAsnValIlePheGlnIleValSerLeu : 51 !.!.|||..! !:!!||||||:!!:!::!!..!:!! eIleLeuSerCysIleIlePheGluValMetGlnIle 443497 : TATACTTTCGTGTATTATATTTGAGGTGATGCAAATA : 443534 vulgar: AmOr135PSE 0 51 . KQ414815.1 443381 443534 + 139 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 443382 443534 139 + . gene_id 2 ; sequence AmOr135PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 443382 443534 . + . KQ414815.1 exonerate:protein2genome:local exon 443382 443534 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 443382 443534 139 + . alignment_id 2 ; Query AmOr135PSE ; Align 443382 1 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr135PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 127 -> 213 Target range: 440447 -> 440711 128 : ValAlaCysThrAsnIleThrLeuSerSerIleSerLeuLeuTyrPheIleThrLeuA : 147 !.!|||! ! !...||||||:!!!!! !! !!!||||||||| :!!:!!:!!: AlaAlaTyrPheGlyIleThrIleThrValThrThrLeuLeuTyrProValSerMetA 440448 : GCGGCTTACTTTGGGATCACAATTACCGTGACGACATTATTATACCCAGTATCAATGG : 440505 148 : snPheIleMetProLeuAsnGluPhe<-><->ArgIleIleHisTyrIleThrLeuPh : 164 !!.!.:!!:!:|||||||||:!!! ! ||| !:!! |||... :::.. spLeuLeuValProLeuAsnLysSerArgProArgTyrLeuGlyTyrPhePheIleLe 440506 : ATCTGTTAGTACCATTGAACAAATCCAGACCTCGTTATCTTGGctacttttttattct : 440562 165 : eSerValAsnArgThrMetTyrPheAsnIleLeuCysLeuAspPheIlePheValVal : 183 . !|||!:!! !..!|||.!!:!!.!!:!! !!! !! ! !!!.||| ! uProSerAsnGlnIleGlnTyrIleAspPheMetThrPheTyrGlyThrLeuValPro 440563 : tccctCTAATCAAATACAGTATATTGATTTTATGACATTTTATGGGACATTAGTTCCC : 440619 184 : IlePheAlaLeuLeuSerValIleCysThrGluSerIleIleGlyLeuTyrSerTyrH : 203 .!! ! !.!||||||!!!|||! !||||||||||||:!!:!!.!!:!! !:!! : PheValGlyLeuLeuThrValThrCysThrGluSerLeuLeuSerIleIleAlaMetT 440620 : TTTGTGGGATTATTAACTGTAACATGCACGGAATCGCTTCTTAGTATTATCGCAATGT : 440679 204 : isIleSerValLeuPheLysIleIleAsnHis : 213 !!:!:||| !|||!:!||||||! !...:!! yrValSerSerLeuTyrLysIleThrGlyTyr 440680 : ATGTGAGCAGTTTATATAAGATTACTGGGTAC : 440711 vulgar: AmOr135PSE 127 213 . KQ414815.1 440447 440711 + 102 M 28 84 G 0 6 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 440448 440711 102 + . gene_id 3 ; sequence AmOr135PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 440448 440711 . + . KQ414815.1 exonerate:protein2genome:local exon 440448 440711 . + . insertions 6 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 440448 440711 102 + . alignment_id 3 ; Query AmOr135PSE ; Align 440448 128 84 ; Align 440538 156 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr132 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 0 -> 51 Target range: 439271 -> 439424 1 : MetAspValPheAspLysTyrTyrHisSerTyrArgThrValLeuLysIleIleGlyL : 20 ||||||||||||:!!||| ! |||...!!!|||||| !:!!|||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 439272 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGCTAGGAC : 439329 21 : euTrpProTyrAsnAsnSerIleTyrValTrpIleGlnArgLeuLeuLeuLeuThrLe : 39 |||||||||||::!.!.||||||||| ! |||!!.|||:!!! !!!! !|||:! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 439330 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 439386 40 : uPheLeuGlyAsnIleIlePheGlnIleMetSerLeu : 51 !.!.|||..! !|||||||||:!!:!:|||..!:!! eMetLeuSerCysIleIlePheGluValMetGlnIle 439387 : TATGCTTTCGTGTATTATATTTGAGGTGATGCAAATA : 439424 vulgar: AmOr132 0 51 . KQ414815.1 439271 439424 + 143 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439272 439424 143 + . gene_id 1 ; sequence AmOr132 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 439272 439424 . + . KQ414815.1 exonerate:protein2genome:local exon 439272 439424 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 439272 439424 143 + . alignment_id 1 ; Query AmOr132 ; Align 439272 1 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr132 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 0 -> 51 Target range: 443381 -> 443534 1 : MetAspValPheAspLysTyrTyrHisSerTyrArgThrValLeuLysIleIleGlyL : 20 ||||||||||||:!!||| ! |||...!!!|||||| !:!!|||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 443382 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGTTAGGAC : 443439 21 : euTrpProTyrAsnAsnSerIleTyrValTrpIleGlnArgLeuLeuLeuLeuThrLe : 39 |||||||||||::!.!.||||||||| ! |||!!.|||:!!! !!!! !|||:! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 443440 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 443496 40 : uPheLeuGlyAsnIleIlePheGlnIleMetSerLeu : 51 !.!.|||..! !|||||||||:!!:!:|||..!:!! eIleLeuSerCysIleIlePheGluValMetGlnIle 443497 : TATACTTTCGTGTATTATATTTGAGGTGATGCAAATA : 443534 vulgar: AmOr132 0 51 . KQ414815.1 443381 443534 + 143 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 443382 443534 143 + . gene_id 2 ; sequence AmOr132 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 443382 443534 . + . KQ414815.1 exonerate:protein2genome:local exon 443382 443534 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 443382 443534 143 + . alignment_id 2 ; Query AmOr132 ; Align 443382 1 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr132 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 129 -> 215 Target range: 440453 -> 440711 130 : TyrAlaIlePheAlaPheCysIleIleLeuLeuLeuCysProIleIleLeuAspPheI : 149 ||| ! .!!.!!.!! !:!:! !||||||! !|||:!! !:!!|||.!.: TyrPheGlyIleThrIleThrValThrThrLeuLeuTyrProValSerMetAspLeuL 440454 : TACTTTGGGATCACAATTACCGTGACGACATTATTATACCCAGTATCAATGGATCTGT : 440511 150 : leMetProLeuAsnGluSerArgIleTyrIleAlaHisTyrIleThrIlePheSerAs : 168 !!:!:|||||||||:!!|||||| ! ! ! ! |||... |||... .. euValProLeuAsnLysSerArgProArgTyrLeuGlyTyrPhePheIleLeuProSe 440512 : TAGTACCATTGAACAAATCCAGACCTCGTTATCTTGGctacttttttattcttccctC : 440568 169 : pLysArgIleIleTyrValAspIleLeuCysLeuAsnTyrMetPheLeuMetIlePhe : 187 !!!.!:!||| |||:!!|||.!!:!! !!! !! ! !!.:!! .!! ! rAsnGlnIleGlnTyrIleAspPheMetThrPheTyrGlyThrLeuValProPheVal 440569 : TAATCAAATACAGTATATTGATTTTATGACATTTTATGGGACATTAGTTCCCTTTGTG : 440625 188 : ValValLeuSerIleMetSerThrGluSerIleLeuGlyLeuTyrSerTyrHisThrS : 207 ! !:!!|||!!!:!!! !!!|||||||||:!!|||.!!:!! !:!! :!!..!| GlyLeuLeuThrValThrCysThrGluSerLeuLeuSerIleIleAlaMetTyrValS 440626 : GGATTATTAACTGTAACATGCACGGAATCGCTTCTTAGTATTATCGCAATGTATGTGA : 440685 208 : erMetLeuPheLysIleIleSerTyr : 215 ||! |||!:!||||||! !.!!||| erSerLeuTyrLysIleThrGlyTyr 440686 : GCAGTTTATATAAGATTACTGGGTAC : 440711 vulgar: AmOr132 129 215 . KQ414815.1 440453 440711 + 115 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 440454 440711 115 + . gene_id 3 ; sequence AmOr132 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 440454 440711 . + . KQ414815.1 exonerate:protein2genome:local exon 440454 440711 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 440454 440711 115 + . alignment_id 3 ; Query AmOr132 ; Align 440454 130 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr139PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 6 -> 137 Target range: 439283 -> 440711 7 : HisGlnSerTyrHisSerTyrArgThrIleMetLysIleIleGlyLeuTrpProTyrA : 26 :!!:!!..!|||...!!!|||||| !!!::!:...:!::!!|||||||||||||||: AsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyLeuTrpProTyrS 439284 : AACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGCTAGGACTCTGGCCTTATT : 439341 27 : snAsnSerIleTyrValTyrIleGlnLysLeuZedLeuLeuIlePhePheLeuGlyGl : 45 :!.!.||||||||| ! |||!!.!:!:!!...!!! !! .!!.!.|||..! erGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIleMetLeuSerCy 439342 : CTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGATTATGCTTTCGTG : 439398 46 : nIleIle{P} >>>> Target Intron 1 >>>> {he}GlnUnkAspAlaVal : 53 ||||||{!} 1038 bp {:!} !... !! !! ! sIleIle{T}-+ ++{yr}AlaAlaTyrPheGly 439399 : TATTATA{T}tt.........................ag{AT}GCGGCTTACTTTGGG : 440460 54 : IleAlaPhePheSerIleSerLeuLeuTyrProIleIleLeuAspPheIleAsnSerL : 73 |||.!!.!! ! !! !!!||||||||||||:!! !:!!|||.!.:!! !!| IleThrIleThrValThrThrLeuLeuTyrProValSerMetAspLeuLeuValProL 440461 : ATCACAATTACCGTGACGACATTATTATACCCAGTATCAATGGATCTGTTAGTACCAT : 440520 74 : euAsnGluSerArgThrArgIleIleHisTyrPheThrIlePhePheHisSerArgIl : 92 |||||:!!|||||| !!||| !:!! |||||| |||... !!:!!:!|| euAsnLysSerArgProArgTyrLeuGlyTyrPhePheIleLeuProSerAsnGlnIl 440521 : TGAACAAATCCAGACCTCGTTATCTTGGctacttttttattcttccctCTAATCAAAT : 440577 93 : eIleTyrIleAspIleLeuCysLeuAsnTyrIlePheLeuAlaIleIleSerLeuLeu : 111 | |||||||||.!!:!! !!! !! ! !!!.:!! !!.!!:!:.!!|||||| eGlnTyrIleAspPheMetThrPheTyrGlyThrLeuValProPheValGlyLeuLeu 440578 : ACAGTATATTGATTTTATGACATTTTATGGGACATTAGTTCCCTTTGTGGGATTATTA : 440634 112 : SerIleIleCysIleGluSerMetIleGlyLeuTyrThrIleValThrThrSerLeuP : 131 !!!:!!! !|||! ||||||:!::!!.!!:!! !.!!!!: !..!!:!|||||| ThrValThrCysThrGluSerLeuLeuSerIleIleAlaMetTyrValSerSerLeu- 440635 : ACTGTAACATGCACGGAATCGCTTCTTAGTATTATCGCAATGTATGTGAGCAGTTTA- : 440694 132 : hePheLysIleIleGlyTyr : 137 !:!||||||! !|||||| --TyrLysIleThrGlyTyr 440695 : --TATAAGATTACTGGGTAC : 440711 vulgar: AmOr139PSE 6 137 . KQ414815.1 439283 440711 + 183 M 41 123 S 0 1 5 0 2 I 0 1034 3 0 2 S 1 2 M 82 246 G 1 0 M 6 18 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439284 440711 183 + . gene_id 1 ; sequence AmOr139PSE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 439284 439407 . + . KQ414815.1 exonerate:protein2genome:local exon 439284 439407 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 439408 439409 . + . intron_id 1 ; splice_site "TT" KQ414815.1 exonerate:protein2genome:local intron 439408 440445 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 440444 440445 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 440446 440711 . + . KQ414815.1 exonerate:protein2genome:local exon 440446 440711 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 439284 440711 183 + . alignment_id 1 ; Query AmOr139PSE ; Align 439284 7 123 ; Align 440448 49 246 ; Align 440694 132 18 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr139PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 6 -> 143 Target range: 443393 -> 444841 7 : HisGlnSerTyrHisSerTyrArgThrIleMetLysIleIleGlyLeuTrpProTyrA : 26 :!!:!!..!|||...!!!|||||| !!!::!:...:!::!!|||||||||||||||: AsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyLeuTrpProTyrS 443394 : AACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGTTAGGACTCTGGCCTTATT : 443451 27 : snAsnSerIleTyrValTyrIleGlnLysLeuZedLeuLeuIlePhePheLeuGlyGl : 45 :!.!.||||||||| ! |||!!.!:!:!!...!!! !! .!!.!.|||..! erGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIleIleLeuSerCy 443452 : CTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGATTATACTTTCGTG : 443508 46 : nIleIle{P} >>>> Target Intron 1 >>>> {he}GlnUnkAspAlaVal : 53 ||||||{!} 1040 bp {:!} !... !! !! ! sIleIle{T}-+ ++{yr}AlaAlaTyrPheGly 443509 : TATTATA{T}tt.........................ag{AT}GCGGCTTACTTTGGG : 444572 54 : IleAlaPhePheSerIleSerLeuLeuTyrProIleIleLeuAspPheIleAsnSerL : 73 |||.!!.!!.!! !! !!!||||||||||||:!! !:!!|||.!.:!! !!| IleThrIleIleValThrThrLeuLeuTyrProValSerMetAspLeuLeuValProL 444573 : ATCACAATTATCGTGACGACATTATTATACCCAGTATCAATGGATCTGTTAGTACCTT : 444632 74 : euAsnGluSerArgThrArgIleIleHisTyrPheThrIlePhePheHisSerArgIl : 92 |||||.!.|||||| !!||| !:!! !||||||..!|||.!! ! !!:!!:!|| euAsnAsnSerArgProArgTyrLeuGlyTyrPheValIleLeuProSerAsnGlnIl 444633 : TGAACAATTCCAGACCTCGTTATCTTGGCTACTTTGTTATTCTTCCCTCTAATCAAAT : 444689 93 : eIleTyrIleAspIleLeuCysLeuAsnTyrIlePheLeuAlaIleIleSerLeuLeu : 111 | |||||||||.!!:!! !!! !! ! !!!.:!! !!.!!:!:.!!|||||| eGlnTyrIleAspPheMetThrPheTyrGlyThrLeuValProPheValGlyLeuLeu 444690 : ACAGTATATTGATTTTATGACATTTTATGGGACATTAGTTCCCTTTGTGGGATTATTA : 444746 112 : SerIleIleCysIleGluSerMetIleGlyLeuTyrThrIleValThrThrSerLeuP : 131 !!!:!! !|||! ||||||:!::!!.!!:!! !.!!!!: ! ! !|||||| ThrValAlaCysThrGluSerLeuLeuSerIleSerAlaMetTyrLeuCysSerLeu- 444747 : ACTGTAGCATGCACGGAATCGCTTCTTAGTATTAGCGCAATGTATCTGTGCAGTTTA- : 444806 132 : hePheLysIleIleGlyTyrArgIleGlnLysIleIle : 143 !:!||||||! !|||||| ! !||| ! !||| --TyrLysIleThrGlyTyrValSerGlnTyrTyrIle 444807 : --TATAAGATTACTGGGTACGTATCTCAATACTATatc : 444841 vulgar: AmOr139PSE 6 143 . KQ414815.1 443393 444841 + 183 M 41 123 S 0 1 5 0 2 I 0 1036 3 0 2 S 1 2 M 82 246 G 1 0 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 443394 444841 183 + . gene_id 2 ; sequence AmOr139PSE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 443394 443517 . + . KQ414815.1 exonerate:protein2genome:local exon 443394 443517 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 443518 443519 . + . intron_id 1 ; splice_site "TT" KQ414815.1 exonerate:protein2genome:local intron 443518 444557 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 444556 444557 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 444558 444841 . + . KQ414815.1 exonerate:protein2genome:local exon 444558 444841 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 443394 444841 183 + . alignment_id 2 ; Query AmOr139PSE ; Align 443394 7 123 ; Align 444560 49 246 ; Align 444806 132 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr139PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 220 -> 297 Target range: 489880 -> 490344 221 : LeuValSerGlnMetMetIleMetPheIleCysAsnTyrSerSerGlnIleLeuIleA : 240 ||| ! !|||:!!.!. !!!:|||||||||||||||! !.!!||| ::: : LeuCysLeuGlnLeuPheTyrIlePheIleCysAsnTyrIleGlyGlnGlyValLysA 489881 : TTGTGTCTGCAGTTGTTTTACATATTCATTTGCAATTATATTGGACAGGGagtaaaaa : 489938 241 : spAsnSerGlnGluLeuLeuTyrAsp{Le} >>>> Target Intron 1 >>>> : 249 :: |||...|||:!!!!!||||||{:!} 230 bp snCysSerSerGluValPheTyrAsp{Il}++ + 489939 : attgcagttcTGAGGTATTTTATGAC{AT}gt.........................a : 490195 250 : {u}TyrIleSerMet<->TrpTyrPheValProLeuLysValZedLysIleLeuLeu : 266 {!}! !! !|||:!! |||||| !.!|||:!! :!!:::|||:!:|||||| +{e}CysAsnSerValAsnTrpTyrThrAlaProIleAlaIleGlnLysLeuLeuLeu 490196 : g{A}TGCAACAGCGTGAATTGGTACACGGCTCCAATTGCCATACAAAAATTGCTGTTG : 490249 267 : LeuIleMetIleGlnSerSerIleThrTyrMetIleSerIleLeuGlyValPheIleL : 286 :!!|||||| !.!.!!!! ! !!.!! ! |||!!!:!!!!!|||:!!!:!|||! IleIleMetGlnAsnThrIleArgAsnSerSerIleThrLeuPheGlyMetTyrIleS 490250 : ATCATTATGCAAAATACTATACGAAATTCTTCAATAACACTCTTCGGAATGTATATAT : 490309 287 : euCysHisIleGlyPheSerThrMetLeuAsnThr : 297 !! ! ! !||||||! !! !:!: !|||||| erSerPheAspGlyPhePheMetValAsnAsnThr 490310 : CGTCTTTCGATGGTTTCTTCATGGTAAATAACAcg : 490344 vulgar: AmOr139PSE 220 297 . KQ414815.1 489880 490344 + 101 M 28 84 S 0 2 5 0 2 I 0 226 3 0 2 S 1 1 M 4 12 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 489881 490344 101 + . gene_id 3 ; sequence AmOr139PSE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 489881 489966 . + . KQ414815.1 exonerate:protein2genome:local exon 489881 489966 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 489967 489968 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 489967 490196 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 490195 490196 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 490197 490344 . + . KQ414815.1 exonerate:protein2genome:local exon 490197 490344 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 489881 490344 101 + . alignment_id 3 ; Query AmOr139PSE ; Align 489881 221 84 ; Align 490198 250 12 ; Align 490213 254 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr136 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 210 Query range: 87 -> 215 Target range: 440000 -> 440711 88 : IleLysLeuLeuPheHisHisMetCysMetGluGluAlaMetIleGlnAspSerIleG : 107 :!!|||!!!:!!|||.!. !!!: ! !!:! ! !! !:!!|||||||||! !| ValLysPheIlePheGluCysIleGlnThrAspValTyrThrLeuGlnAspSerAsnG 440001 : GTCAAGTTTATCTTTGAGTGTATACAGACAGATGTATATACGCTACAAGATTCGAACG : 440058 108 : luAlaGlnIleArgArgLysTyrIleAspAspSerCysTyrMetIleAspIlePhePh : 126 || !:!!|||! !! !|||||||||||||||||| !! !!:||| ||||||.. luMetLysIleLeuThrLysTyrIleAspAspSerSerArgIleIleThrIlePheLe 440059 : AGATGAAGATACTAACGAAATATATCGATGATTCAAGTCGAATaatcacaattttcct : 440115 127 : e{T} >>>> Target Intron 1 >>>> {rp}MetThrTyrValGlyIleAla : 134 .{!} 327 bp {::} !.!!||| !!||||||.!! u{T}++ ++{yr}AlaAlaTyrPheGlyIleThr 440116 : a{t}gt.........................ag{AT}GCGGCTTACTTTGGGATCACA : 440466 135 : LeuCysSerIleLeuLeuLeuCysProIleThrLeuAspPheIleMetProLeuAsnG : 154 :!! ! !! !||||||! !|||:!!:!!:!!|||.!.:!!:!:|||||||||: IleThrValThrThrLeuLeuTyrProValSerMetAspLeuLeuValProLeuAsnL 440467 : ATTACCGTGACGACATTATTATACCCAGTATCAATGGATCTGTTAGTACCATTGAACA : 440526 155 : luSerArgThrArgIleValHisTyrValThrIlePheSerAspLysSerIleIleTy : 173 !!|||||| !!||| !:!! ||| |||... ..!!!...!||| || ysSerArgProArgTyrLeuGlyTyrPhePheIleLeuProSerAsnGlnIleGlnTy 440527 : AATCCAGACCTCGTTATCTTGGctacttttttattcttccctCTAATCAAATACAGTA : 440583 174 : rMetAspIleLeuCysLeuAsnTyrMetLeuLeuAlaIleLeuValIleLeuSerAla : 192 |!!:|||.!!:!! !!! !! ! |||:!! !!.!!:!!! !:!!|||!!!!.! rIleAspPheMetThrPheTyrGlyThrLeuValProPheValGlyLeuLeuThrVal 440584 : TATTGATTTTATGACATTTTATGGGACATTAGTTCCCTTTGTGGGATTATTAACTGTA : 440640 193 : ThrCysThrGluSerIleLeuGlyLeuTyrSerTyrHisThrSerIleMetPheLysI : 212 |||||||||||||||:!!|||.!!:!! !:!! :!!..!|||! !:!:!:!|||| ThrCysThrGluSerLeuLeuSerIleIleAlaMetTyrValSerSerLeuTyrLysI 440641 : ACATGCACGGAATCGCTTCTTAGTATTATCGCAATGTATGTGAGCAGTTTATATAAGA : 440700 213 : leIleGlyHis : 215 ||! !|||:!! leThrGlyTyr 440701 : TTACTGGGTAC : 440711 vulgar: AmOr136 87 215 . KQ414815.1 440000 440711 + 210 M 39 117 S 0 1 5 0 2 I 0 323 3 0 2 S 1 2 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 440001 440711 210 + . gene_id 1 ; sequence AmOr136 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 440001 440118 . + . KQ414815.1 exonerate:protein2genome:local exon 440001 440118 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 440119 440120 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 440119 440445 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 440444 440445 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 440446 440711 . + . KQ414815.1 exonerate:protein2genome:local exon 440446 440711 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 440001 440711 210 + . alignment_id 1 ; Query AmOr136 ; Align 440001 88 117 ; Align 440448 128 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr136 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 197 Query range: 87 -> 215 Target range: 444110 -> 444823 88 : IleLysLeuLeuPheHisHisMetCysMetGluGluAlaMetIleGlnAspSerIleG : 107 :!!|||! !:!!|||.!. !!!: ! !!:! ! !! !:!!|||||||||! !| ValLysSerIlePheGluCysIleGlnThrAspValTyrThrLeuGlnAspSerAsnG 444111 : GTCAAGTCTATCTTTGAGTGTATACAGACAGATGTATATACGCTACAAGATTCGAACG : 444168 108 : luAlaGlnIleArgArgLysTyrIleAspAspSerCysTyrMetIleAspIlePhePh : 126 || !:!!|||! !! !|||||||||||||||||| !! !!:||| ||||||.. luMetLysIleLeuThrLysTyrIleAspAspSerSerArgIleIleThrIlePheLe 444169 : AGATGAAGATACTAACGAAATATATCGATGATTCAAGTCGAATaatcacaattttcct : 444225 127 : e{T} >>>> Target Intron 1 >>>> {rp}MetThrTyrValGlyIleAla : 134 .{!} 329 bp {::} !.!!||| !!||||||.!! u{T}++ ++{yr}AlaAlaTyrPheGlyIleThr 444226 : a{t}gt.........................ag{AT}GCGGCTTACTTTGGGATCACA : 444578 135 : LeuCysSerIleLeuLeuLeuCysProIleThrLeuAspPheIleMetProLeuAsnG : 154 :!! ! !! !||||||! !|||:!!:!!:!!|||.!.:!!:!:|||||||||. IleIleValThrThrLeuLeuTyrProValSerMetAspLeuLeuValProLeuAsnA 444579 : ATTATCGTGACGACATTATTATACCCAGTATCAATGGATCTGTTAGTACCTTTGAACA : 444638 155 : luSerArgThrArgIleValHisTyrValThrIlePheSerAspLysSerIleIleTy : 173 !.|||||| !!||| !:!! !||| !!..!|||.!! !!..!!!...!||| || snSerArgProArgTyrLeuGlyTyrPheValIleLeuProSerAsnGlnIleGlnTy 444639 : ATTCCAGACCTCGTTATCTTGGCTACTTTGTTATTCTTCCCTCTAATCAAATACAGTA : 444695 174 : rMetAspIleLeuCysLeuAsnTyrMetLeuLeuAlaIleLeuValIleLeuSerAla : 192 |!!:|||.!!:!! !!! !! ! |||:!! !!.!!:!!! !:!!|||!!!!.! rIleAspPheMetThrPheTyrGlyThrLeuValProPheValGlyLeuLeuThrVal 444696 : TATTGATTTTATGACATTTTATGGGACATTAGTTCCCTTTGTGGGATTATTAACTGTA : 444752 193 : ThrCysThrGluSerIleLeuGlyLeuTyrSerTyrHisThrSerIleMetPheLysI : 212 .!!||||||||||||:!!|||.!!:!! !:!! :!! !!!!! !:!:!:!|||| AlaCysThrGluSerLeuLeuSerIleSerAlaMetTyrLeuCysSerLeuTyrLysI 444753 : GCATGCACGGAATCGCTTCTTAGTATTAGCGCAATGTATCTGTGCAGTTTATATAAGA : 444812 213 : leIleGlyHis : 215 ||! !|||:!! leThrGlyTyr 444813 : TTACTGGGTAC : 444823 vulgar: AmOr136 87 215 . KQ414815.1 444110 444823 + 197 M 39 117 S 0 1 5 0 2 I 0 325 3 0 2 S 1 2 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 444111 444823 197 + . gene_id 2 ; sequence AmOr136 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 444111 444228 . + . KQ414815.1 exonerate:protein2genome:local exon 444111 444228 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 444229 444230 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 444229 444557 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 444556 444557 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 444558 444823 . + . KQ414815.1 exonerate:protein2genome:local exon 444558 444823 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 444111 444823 197 + . alignment_id 2 ; Query AmOr136 ; Align 444111 88 117 ; Align 444560 128 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr136 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 0 -> 51 Target range: 439271 -> 439424 1 : MetAsnValPheAspLysHisTyrHisThrTyrArgThrLeuMetLysIleValGlyL : 20 |||:!!||||||:!!|||!!.|||...||||||||| !:!!:!:...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 439272 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGCTAGGAC : 439329 21 : euTrpProTyrAsnAsnSerIleTyrValTrpIleGlnArgLeuTrpPheLeuMetPh : 39 |||||||||||::!.!.||||||||| ! |||!!.|||:!!! !||| !! !.! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 439330 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 439386 40 : ePhePheGlyAsnIleIlePheGlnIleMetSerLeu : 51 !.!..!!..! !|||||||||:!!:!:|||..!:!! eMetLeuSerCysIleIlePheGluValMetGlnIle 439387 : TATGCTTTCGTGTATTATATTTGAGGTGATGCAAATA : 439424 vulgar: AmOr136 0 51 . KQ414815.1 439271 439424 + 134 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439272 439424 134 + . gene_id 3 ; sequence AmOr136 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 439272 439424 . + . KQ414815.1 exonerate:protein2genome:local exon 439272 439424 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 439272 439424 134 + . alignment_id 3 ; Query AmOr136 ; Align 439272 1 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr136 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 0 -> 51 Target range: 443381 -> 443534 1 : MetAsnValPheAspLysHisTyrHisThrTyrArgThrLeuMetLysIleValGlyL : 20 |||:!!||||||:!!|||!!.|||...||||||||| !:!!:!:...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 443382 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGTTAGGAC : 443439 21 : euTrpProTyrAsnAsnSerIleTyrValTrpIleGlnArgLeuTrpPheLeuMetPh : 39 |||||||||||::!.!.||||||||| ! |||!!.|||:!!! !||| !! !.! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 443440 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 443496 40 : ePhePheGlyAsnIleIlePheGlnIleMetSerLeu : 51 !.!..!!..! !|||||||||:!!:!:|||..!:!! eIleLeuSerCysIleIlePheGluValMetGlnIle 443497 : TATACTTTCGTGTATTATATTTGAGGTGATGCAAATA : 443534 vulgar: AmOr136 0 51 . KQ414815.1 443381 443534 + 134 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 443382 443534 134 + . gene_id 4 ; sequence AmOr136 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 443382 443534 . + . KQ414815.1 exonerate:protein2genome:local exon 443382 443534 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 443382 443534 134 + . alignment_id 4 ; Query AmOr136 ; Align 443382 1 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr136 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 280 -> 331 Target range: 441443 -> 441596 281 : LeuHisArgLeuLeuAsnAlaIleValIleLysLysAspGluLeuGluIleLeuIleS : 300 :!! !:!:!!:!!!!.|||||||||! !! !!!.|||:!!||||||||||||:!!| ValSerGlnIleValLysAlaIleValThrMetAsnAspGlnLeuGluIleLeuLeuS 441444 : GTTTCACAGATAGTAAAAGCAATAGTGACAATGAATGATCAATTGGAGATACTGTTAA : 441501 301 : erPheIlePhePheThrThrGlnLeuValIleThrPheLeuAsnAsnAsnCysAsnGl : 319 ||.!!!!:.!! !!!:!!.!!!.:!!|||.!! !|||!!!|||||| !!......|| erIleMetIleValSerAsnHisIleValPheLeuPhePheAsnAsnTyrAlaGlyGl 441502 : GTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGGACA : 441558 320 : nIleLeuIleAspAsnSerGlnGluLeuPheIleGlu : 331 |:!!||||||:!!:!!|||:!!|||:!!|||:!!||| nLeuLeuIleAsnHisSerGluGluValPheValGlu 441559 : GTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA : 441596 vulgar: AmOr136 280 331 . KQ414815.1 441443 441596 + 110 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441444 441596 110 + . gene_id 5 ; sequence AmOr136 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441444 441596 . + . KQ414815.1 exonerate:protein2genome:local exon 441444 441596 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441444 441596 110 + . alignment_id 5 ; Query AmOr136 ; Align 441444 281 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr136 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 280 -> 331 Target range: 445555 -> 445708 281 : LeuHisArgLeuLeuAsnAlaIleValIleLysLysAspGluLeuGluIleLeuIleS : 300 :!! !:!:!!:!!!!.|||||||||! !! !!!.|||:!!||||||||||||:!!| ValSerGlnIleValLysAlaIleValThrMetAsnAspGlnLeuGluIleLeuLeuS 445556 : GTTTCACAGATAGTAAAAGCAATAGTGACAATGAATGATCAATTGGAGATACTGTTAA : 445613 301 : erPheIlePhePheThrThrGlnLeuValIleThrPheLeuAsnAsnAsnCysAsnGl : 319 ||.!!!!:.!! !!!:!!.!!!.:!!|||.!! !|||!!!|||||| !!......|| erIleMetIleValSerAsnHisIleValPheLeuPhePheAsnAsnTyrAlaGlyGl 445614 : GTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGGACA : 445670 320 : nIleLeuIleAspAsnSerGlnGluLeuPheIleGlu : 331 |:!!||||||:!!:!!|||:!!|||:!!|||:!!||| nLeuLeuIleAsnHisSerGluGluValPheValGlu 445671 : GTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA : 445708 vulgar: AmOr136 280 331 . KQ414815.1 445555 445708 + 110 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445556 445708 110 + . gene_id 6 ; sequence AmOr136 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445556 445708 . + . KQ414815.1 exonerate:protein2genome:local exon 445556 445708 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445556 445708 110 + . alignment_id 6 ; Query AmOr136 ; Align 445556 281 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr122 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 330 -> 391 Target range: 128560 -> 128303 331 : GluPheAlaSerThrTrpTyrArgIleProLeuLysAlaGlnLysLeuLeuLeuPheM : 350 ...!:!..!:!!! !||||||!:! !|||:::|||:::||||||:::|||||||||: SerTyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheL 128560 : AGCTATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCC : 128503 351 : etIleLeuArgSerSerMetGlyCysGluIleCysLeuSerGlyLeuPheThrProSe : 369 !:!!:! !|||! !! ! !|||..!:!! |||!.!..!||| !!.!! !!.! euMetHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGl 128502 : TCATGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGG : 128446 370 : rTyrAlaGlyLeuThrSer >>>> Target Intron 1 >>>> MetMetSerS : 379 ! !!! ! !! !.!!!!! 74 bp |||:!!..!! yAsnGluLeuTyrAlaThr++ ++MetValGlnT 128445 : TAACGAGTTGTACGCTACCgt.........................agaTGGTGCAGA : 128342 380 : erSerPheSerTyrCysThrValIleTyrSerIleGln : 391 !!.!!|||||||||! !||||||:!!||||||:!:||| hrGlyPheSerTyrPheThrValLeuTyrSerLeuGln 128341 : CTGGTTTCTCCTACTTTACGGTTCTCTACTCGTTGCAA : 128304 vulgar: AmOr122 330 391 . KQ414817.1 128560 128303 - 104 M 45 135 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128304 128560 104 - . gene_id 1 ; sequence AmOr122 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128560 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128560 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128304 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128304 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128304 128560 104 - . alignment_id 1 ; Query AmOr122 ; Align 128561 331 135 ; Align 128352 376 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr146 Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 685 Query range: 0 -> 234 Target range: 5294 -> 4042 1 : MetPheArgAsnAlaThrProGluLysAlaIleAlaPheThrGlnPheIleValSerLeuSe : 21 |||!!.!:! !! !!!:!||||||!:!||||||:!!.!!..!!!. !!|||..!:!!!!!!! MetLeuLysTyrProSerProGluArgAlaIleSerLeuValHisValIleThrAlaPheTh 5294 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCACGTTATCACGGCTTTTAC : 5234 22 : rCysCysTrpProLeuProSerThrAlaThrLysLeuGlnThrArgCysPheLysIleIleA : 42 !|||||||||||||||||||||||||||||||||! !! !..!! ! |||||||||:!:| rCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuA 5233 : CTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGA : 5171 43 : rgSerLeuLeuPheLeuAsnSerLeuLeuLeuPhePheProLeuLeuTyrPheValTyrVal : 62 |||||!!!|||.!!||||||:!!|||:!!||||||.!.|||||||||||| !:!!:!!||| rgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHisVal 5170 : GATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTG : 5111 63 : AsnArgAsnAspAsnThrThrPheCysLysAlaMetSerLeuSerLeuAlaValValGlnVa : 83 :!!||||||||| ! !!.! !!...|||||| !!!|||!!!||||||:::||||||:: HisArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGlnIl 5110 : CATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCctcgtgcaaat : 5048 84 : lProLeuLeuSerSerPheCysIleThrGlnTyrAspArgPheGln >>>> Target In : 99 : ... ::!! ! !!|||||| !|||||||||!.!|||||| 550 ePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGln++ 5047 : atttttccagacTTTCGTTTGCATCGGCCAATACGATCATTTTCAGgt.............. : 4998 100 : tron 1 >>>> ArgLeuIleLysGluMetLysPheCysCysGluAsnAlaAsnSerTyrG : 115 bp !:!||||||:!!|||||||||.!!|||||||||!..|||!!. !!|||| ++LysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrG 4997 : ...........agAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACG : 4402 116 : luArgGlnValPheGlnGlyTyrAlaLysSerTyrAlaThrPheTyrGlyValSerAlaIle : 135 |||||.!.||||||||| !!|||!.!!!.!.!:!:::: |||||| ... !!:!! ! luArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSer 4401 : AAAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCA : 4342 136 : TrpPheTyrTrpCysAlaLeuIleValValValGlyThrLeuPheIleSerAspProPhePr : 156 |||||||||! |||:!!|||:!!|||:!!|||!:!|||.!!||||||||||||||||| TrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPhePr 4341 : TGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCC : 4279 157 : oThrAsnAlaGluTyrProPheProValHisPheGluProValArgSerIleValPheValG : 177 ||||||||||! !|||||||||||||||:!!|||||||||:!!|||||||||:!!|||:!!! oThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetH 4278 : AACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGC : 4216 178 : lnGlnAlaLeuValGlyPheGlnCysSerAlaHisLeuCysValAsnIlePheCysAlaLeu : 197 !.|||:!!!!!||||||.!.||||||:!!|||||| ! !!:!!|||:!:.!!! !|||||| isGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeu 4215 : ACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTG : 4156 198 : LeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuMetAsnGluLeuArgAlaValGluAs : 218 ||||||||||||.!!.!!|||||||||||||||||||||!..||||||||| !|||.!.:! LeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAs 4155 : TTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGA : 4093 219 : nIleGluSerLeuIleLysCysIleGluLysTyrTyrAlaIleArgArg : 234 !||||||!!!||||||||| !!!!::!!||||||! .!!:!:|||||| pIleGluThrLeuIleLysSerMetLysLysTyrSerThrValArgArg 4092 : TATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: AmOr146 0 234 . LHQN01020543.1 5294 4042 - 685 M 98 294 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 5294 685 - . gene_id 1 ; sequence AmOr146 ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 5001 5294 . - . LHQN01020543.1 exonerate:protein2genome:local exon 5001 5294 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 4999 5000 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 4451 5000 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 4451 4452 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 4043 4450 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4450 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 5294 685 - . alignment_id 1 ; Query AmOr146 ; Align 5295 1 294 ; Align 4451 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr146 Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 328 Query range: 267 -> 373 Target range: 1895 -> 1419 268 : ArgGlnProPheThrValLysLeuGlnPheLeuThrLeuSerAlaThrThrLeuLeuAlaVa : 288 !:!|||||||||.!!|||||| !||||||||||||:!!|||!.!|||.!!||||||! !|| LysGlnProPheAlaValLysAlaGlnPheLeuThrValSerGlyThrAlaLeuLeuGluVa 1895 : AAACAACCGTTCGCTGTGAAAGCTCAGTTTCTTACTGTGAGTGGAACCGCTTTGCTGGAAGT : 1835 289 : lPheMetCysAlaTrpProAlaAspTyrLeuMetAspVal >>>> Target Intron 1 : 302 |.!!||||||:!! |||||||||:!!|||!!:|||:!! 82 bp lLeuMetCysSerLeuProAlaAspHisLeuIleAspMet++ 1834 : GCTTATGTGTTCACTACCAGCTGACCATTTGATAGATATGgt.................... : 1791 303 : >>>> SerGluAsnThrMetArgAlaValTyrGluSerGluTrpTyrLysArgSerLeuL : 320 |||||||||! !|||!:!!.!:!!|||||||||:!!||||||:!!|||||||||| ++SerGluAsnIleMetGlnGlyIleTyrGluSerLysTrpTyrGluArgSerLeuL 1790 : .....agAGCGAGAACATAATGCAAGGAATATATGAATCAAAATGGTACGAACGAtctctaa : 1657 321 : ysLeuGlnLysPheValLeuPheAlaThrIleProGlnThrProValIleLeuLysValArg : 340 ||:::|||||| !..!:!!.!! ! !! !||||||:!!||||||! !:!!|||:!!!:! ysIleGlnLysSerThrValLeuMetLeuThrProGlnSerProValThrValLysIleLys 1656 : aaattcaaaagtcTACAGTCCTCATGTTGACTCCTCAATCTCCGGTGACAGTAAAAATCAAG : 1597 341 : CysIleIleProAlaPheSerLeuAsnTyrTyrCysSer >>>> Target Intron 2 : 354 |||:!!||||||!.....|||||||||:::||||||||| 76 bp CysLeuIleProValLeuSerLeuAsnPheTyrCysSer++ 1596 : TGCCTCATTCCAGttctttctttgaatttttactgCTCGgt..................... : 1553 355 : >>>> PheIleThrAsnValLeuSerMetPheThrAlaLeuArgValLeuMetTyrLysAs : 372 !:!:!!:!!||||||!!!|||:!:|||||||||||||||:!! !||| !!.|| ++TyrValSerAsnValPheSerLeuPheThrAlaLeuArgIleAlaMetIleAsnAs 1552 : ....agTACGTCTCAAATGTGTTCTCTTTATTTACCGCTTTAAGAATAGCCATGATAAATGa : 1425 373 : pGlu : 373 |||| pGlu 1424 : tgaa : 1420 vulgar: AmOr146 267 373 . LHQN01020543.1 1895 1419 - 328 M 34 102 5 0 2 I 0 78 3 0 2 M 52 156 5 0 2 I 0 72 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 1420 1895 328 - . gene_id 2 ; sequence AmOr146 ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 1794 1895 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1794 1895 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 1792 1793 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 1712 1793 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 1712 1713 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 1556 1711 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1556 1711 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 1554 1555 . - . intron_id 2 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 1480 1555 . - . intron_id 2 LHQN01020543.1 exonerate:protein2genome:local splice3 1480 1481 . - . intron_id 1 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 1420 1479 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1420 1479 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 1420 1895 328 - . alignment_id 2 ; Query AmOr146 ; Align 1896 268 102 ; Align 1712 302 156 ; Align 1480 354 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr142 Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 363 Query range: 5 -> 234 Target range: 5279 -> 4042 6 : ThrProGluLysAlaIleLeuPheThrLysLeuSerValAlaLeuThrCysSerTrpProPr : 26 !:!||||||!:!||||||! !.!!..! ! :!!! !..!|||!!!||||||!!!||||||! SerProGluArgAlaIleSerLeuValHisValIleThrAlaPheThrCysCysTrpProLe 5279 : AGTCCAGAAAGAGCCATCTCCCTTGTCCACGTTATCACGGCTTTTACCTGCTGTTGGCCTCT : 5219 27 : oSerProLeuAlaThrLysAlaGlnHisLeuPhePheAsnAlaLeuTrpCysIleAlaPheL : 47 ! !! !! !|||||||||:!!! ! ||| |||!!. !||| ! ! !.!! !.!!| uProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuArgSerPheLeuLeuL 5218 : TCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGAGATCTTTCCTGCTTT : 5156 48 : euThrSerValMetLeuPheLeuProLeuLeuAlaAlaIleTyrValTyrArgLysHisPro : 67 ||!.!:!!:!!:!!|||||||||||||||||| !|||:!::!!|||:!!|||!!. !! !! euAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHisValHisArgAsnAspAla 5155 : TAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTGCATCGAAACGACGCC : 5096 68 : ValIleLeuGlyLysThrValSerLeuThrAlaAlaValAlaGlnValThrIleLysMetIl : 88 ! !! !:!!!.!|||.!!!.!!!!|||||| !|||:::...|||::: ...::: .! GluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPh 5095 : GAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCctcgtgcaaatatttttccagacTTT : 5033 89 : eIleCysArgLeuGlnGlnLysArgPheGln >>>> Target Intron 1 >>>> Me : 99 !:!!|||! ! !||| ! ! !.!|||||| 550 bp ! eValCysIleGlyGlnTyrAspHisPheGln++ ++Ly 5032 : CGTTTGCATCGGCCAATACGATCATTTTCAGgt.........................agAA : 4450 100 : tLeuTyrSerGluMetGluAsnPheCysLysGlnAlaThrAsnGluGluLysIleIleLeuG : 120 ||| !..!||||||:!!! !! !|||:!! !|||! ! ! |||!:! !:!!!!!| sLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheG 4449 : ACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGACGTCTTCC : 4387 121 : lnArgTyrValAspArgTyrLysTyrPheHisSerPheTyrIleLeuTrpSerPheLeuThr : 140 |||||||||||:!!!:!:!:... |||::: ! ! !|||! !!:!|||||| lnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheTyrLeuThr 4386 : AACGATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTTACTTAACA : 4327 141 : ThrIlePheValIleCysGlyProLeuTyrThrValGlnThrPheProThrHisAlaIleTy : 161 .!!|||.!!:!!:!! !||| !||| !! ! !.!. !!|||||||||:!!|||:!!|| AlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPheProThrAsnAlaValTy 4326 : GCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACCAACGCAGTATA : 4264 162 : rProPheSerValArgArgHisLeuTyrLysGlyLeuIlePhePheHisGlnSerLeuValG : 182 ||||||| !!|||!.! !.!.! !! !:!.!!:!!||||||.!.|||||||||!!!|||| rProPheProValAsnPheGluProLeuArgSerIleIlePheMetHisGlnSerPheValG 4263 : TCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCACCAATCGTTCGTTG : 4201 183 : lyPheGlnValSerSerGlyMetAlaIleAspThrGlnIleAlaLeuLeuLeuArgTyrAla : 202 ||.!.||| !:!!:!! ! ::!!!::!!..!! !||||||||||||! !!:!.!! lyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeuLeuLeuLeuPheThr 4200 : GCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTGTTATTGCTATTCACT : 4141 203 : ThrAlaArgPheGluIleLeuGlyIleGlnPheAsnAsnAlaLysSerAspGlyGluPheAs : 223 ||||||||||||||||||||| !! :!!!!.!..|||!.!!!...! !! ! !.!. ThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAspIleGluThrLeuIl 4140 : ACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGATATCGAAACACTGAT : 4078 224 : pAlaCysIleLysLysHisAspGluLeuLeuArg : 234 ! ! !!!!:||||||:!!... :!!! !||| eLysSerMetLysLysTyrSerThrValArgArg 4077 : TAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: AmOr142 5 234 . LHQN01020543.1 5279 4042 - 363 M 93 279 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 5279 363 - . gene_id 1 ; sequence AmOr142 ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 5001 5279 . - . LHQN01020543.1 exonerate:protein2genome:local exon 5001 5279 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 4999 5000 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 4451 5000 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 4451 4452 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 4043 4450 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4450 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 5279 363 - . alignment_id 1 ; Query AmOr142 ; Align 5280 6 279 ; Align 4451 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr147FIX Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 245 Query range: 94 -> 232 Target range: 4462 -> 4042 95 : AspSerLeuGlnArgValValGluGluMetMetIleCysIleLysGluMetGlnLeuAsnGl : 115 |||!!!||||||!:!:!!:!!|||||||||! !|||||| !:!! ! :!!! ! !!|| AspThrLeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGl 4462 : GACACGTTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGA : 4402 116 : u<-><->IleMetCysAlaTyrValAlaLysCysAsnIlePheTyrGlyGlyThrIleValL : 134 | :!!.!. !|||||| !||| ::::::|||||| ! !! uArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerT 4401 : AAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCAT : 4339 135 : euIleTyrThrThrAlaThrValPheIleLeuGlyProThrPheLeuProIleThrPhePro : 154 !.!!||| !||||||! !:!!.!.:!!|||||| ! !.!!:!! !! ! !!|||||| rpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPhePro 4338 : GGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCA : 4279 155 : TrpGluThrGluTyrProPheGlnValAsnTyrThrSerArgAsnPheIleIleTyrMetHi : 175 .!..!!! !|||||||||! ||||||!:! ! !! !!.. !||||||!:!||||| ThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHi 4278 : ACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCA : 4216 176 : sGlnPhePhePheThrTyrGlnCysAlaAlaHisIleCysValSerMetPheValAlaLeuL : 196 ||||! ||| !! ! ||||||||||||||| ! !!:!!!:!:!!.!! !||||||| sGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeuL 4215 : CCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTGT : 4153 197 : euLeuTrpPheThrSerAlaArgPheGluCysLeuValLysGluLeuGlnLysThrThrAsn : 216 ||||| ||||||!!!|||||||||||| |||:!!! !||||||::!!!...!!.!:!! euLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAsp 4152 : TATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGAT : 4093 217 : IleGluMetLeuIleValCysLeuLysLysGlnLeuLeuLeuArgArg : 232 ||||||! |||||| ! !!:!!|||||| ! ! ! !:!!|||||| IleGluThrLeuIleLysSerMetLysLysTyrSerThrValArgArg 4092 : ATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: AmOr147FIX 94 232 . LHQN01020543.1 4462 4042 - 245 M 21 63 G 0 6 M 117 351 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 4462 245 - . gene_id 1 ; sequence AmOr147FIX ; gene_orientation . LHQN01020543.1 exonerate:protein2genome:local cds 4043 4462 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4462 . - . insertions 6 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 4462 245 - . alignment_id 1 ; Query AmOr147FIX ; Align 4463 95 63 ; Align 4394 116 351 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr148 Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 203 Query range: 0 -> 98 Target range: 5294 -> 5000 1 : MetLeuLysTyrValThrProGluLysGlyIleTyrIleValTrpLeuSerValAlaLeuSe : 21 |||||||||||| !!:!||||||!:!!.!|||! !:!!||| :!!! !..!|||!!!!! MetLeuLysTyrProSerProGluArgAlaIleSerLeuValHisValIleThrAlaPheTh 5294 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCACGTTATCACGGCTTTTAC : 5234 22 : rLeuCysTrpProLeuProAlaSerSerThrArgLysGlnIleValCysIleLysIleLeuG : 42 !! !|||||||||||||||:!!!!!:!!|||!:!...! !:!::!! .!!|||||||||: rCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuA 5233 : CTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGA : 5171 43 : lnIleGlyAlaIleIleSerAlaPheMetValLeuLeuProLeuIleTyrAlaIleHisLeu : 62 :! ! ! !:!!:!!!:!|||!!.:!!:!!!!!|||||||||:!!||||||:!:|||:!! rgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHisVal 5170 : GATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTG : 5111 63 : AsnIleHisAsnLeuIleAsnLeuPheLysCysIleCysLeuLeuIleCysValPheGlnAs : 83 :!! !:!!:!! ! |||:!! |||..! !|||||| !:!!..!::: ||| HisArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGlnIl 5110 : CATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCctcgtgcaaat : 5048 84 : nIleIleGlnThrIleIleCysPheIleLysTyrAspValLeuGln : 98 ......||||||.!!:!!|||.!! !:!!|||||| !!!!||| ePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGln 5047 : atttttccagacTTTCGTTTGCATCGGCCAATACGATCATTTTCAG : 5001 vulgar: AmOr148 0 98 . LHQN01020543.1 5294 5000 - 203 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 5001 5294 203 - . gene_id 1 ; sequence AmOr148 ; gene_orientation . LHQN01020543.1 exonerate:protein2genome:local cds 5001 5294 . - . LHQN01020543.1 exonerate:protein2genome:local exon 5001 5294 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 5001 5294 203 - . alignment_id 1 ; Query AmOr148 ; Align 5295 1 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr148 Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 164 Query range: 298 -> 363 Target range: 1711 -> 1440 299 : SerIleAsnIleLeuArgSerAlaTyrAsnSerIleTrpTyrGluGlnSerLeuAspMetGl : 319 ||| ||||||:!!!:!.!! !|||.!.|||! !|||||||||!:!|||||| :::|| SerGluAsnIleMetGlnGlyIleTyrGluSerLysTrpTyrGluArgSerLeuLysIleGl 1711 : AGCGAGAACATAATGCAAGGAATATATGAATCAAAATGGTACGAACGAtctctaaaaattca : 1651 320 : nLysAspLeuLeuIleIleLeuMetTyrGlnArgProValIleLeuSerIleAsnValLeuL : 340 ||||..! !:!!:!!!!:|||! !||| !||||||! !:!!!.!|||!!. !|||: nLysSerThrValLeuMetLeuThrProGlnSerProValThrValLysIleLysCysLeuI 1650 : aaagtcTACAGTCCTCATGTTGACTCCTCAATCTCCGGTGACAGTAAAAATCAAGTGCCTCA : 1588 341 : euProGluLeuThrLeuArgTyrTyrCysSer >>>> Target Intron 1 >>>> T : 351 !!|||! |||:::|||...:::||||||||| 76 bp | leProValLeuSerLeuAsnPheTyrCysSer++ ++T 1587 : TTCCAGttctttctttgaatttttactgCTCGgt.........................agT : 1479 352 : yrValAlaAsnAlaPheSerValPheThrAlaLeuArg : 363 |||||:!!|||!.!||||||:!!||||||||||||||| yrValSerAsnValPheSerLeuPheThrAlaLeuArg 1478 : ACGTCTCAAATGTGTTCTCTTTATTTACCGCTTTAAGA : 1441 vulgar: AmOr148 298 363 . LHQN01020543.1 1711 1440 - 164 M 52 156 5 0 2 I 0 72 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 1441 1711 164 - . gene_id 2 ; sequence AmOr148 ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 1556 1711 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1556 1711 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 1554 1555 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 1480 1555 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 1480 1481 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 1441 1479 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1441 1479 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 1441 1711 164 - . alignment_id 2 ; Query AmOr148 ; Align 1712 299 156 ; Align 1480 351 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr145 Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 218 Query range: 13 -> 234 Target range: 5258 -> 4048 14 : IleLeuGluLeuThrGlyThrPheThrCysAlaTrpProIleAsnProAsnAspSerLysTh : 34 :!!:!!.!.:!!! ! !.!!|||||||||..!||||||:!! ! !!!..! !!!|||:! LeuValHisValIleThrAlaPheThrCysCysTrpProLeuProSerThrAlaThrLysSe 5258 : CTTGTCCACGTTATCACGGCTTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTC : 5198 35 : rTyrIleIleIleArgAsnIleLeuTrpIlePheThrIleLeuAsnValIlePheLeuAlaI : 55 ! :!::!! ! !!!.|||||| ! !||| !:!!||||||!.!:!! ! ||| !: rLeuValLeuGlnPheLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheL 5197 : TCTGGTGCTTCAATTTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTC : 5135 56 : leSerMetIlePheAlaIlePheHisPheArgSerAspIleProLysSerMetLysThrAla : 75 !! !!:!!:!!!:!|||:!: ! !|||!:!||| ! !!!. ! !|||.!!||| euProLeuLeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAla 5134 : TACCTTTGTTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCT : 5075 76 : SerGluMetAlaAlaLeuLeuGluValAlaLeuAspLeuAlaLeuPheLysTrpAsnAsnSe : 96 !!! !! ! !||||||::::::::: ...... ! !:!!! !! ! .!. !!.. CysLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnTyrAs 5074 : TGCCTGACGCTTGCCctcgtgcaaatatttttccagacTTTCGTTTGCATCGGCCAATACGA : 5012 97 : rGluLeuGln >>>> Target Intron 1 >>>> IleLeuIleGluGluValLysSe : 107 !.!.!!!||| 550 bp ! !||||||||||||:!!|||! pHisPheGln++ ++LysLeuIleGluGluMetLysIl 5011 : TCATTTTCAGgt.........................agAAACTAATCGAAGAAATGAAGAT : 4429 108 : rPheLeuGluIleAlaAspGluTyrGluIleLysIleLeuGlnGlyTyrIleAsnArgTyrL : 128 !! !! !|||! !||| ! !||||||! ! ! :!!!!!||| !!|||:!!|||!:!:!:. eCysCysGluThrAlaLysProTyrGluArgAspValPheGlnArgTyrValAsnLysHisS 4428 : TTGTTGTGAAACAGCAAAACCATACGAAAGAGACGTCTTCCAACGATACGTCAATAAGCAct : 4366 129 : ysLysPhePheSerThrValSerMetGlyTyrIleLeuProAlaSerSerPheIleLeuThr : 148 .. |||::: ||| !||| !!!:! !||| !!|||! !! !.!.:!!||| ! erLeuPheTyrIleThrCysSerSerTrpPheTyrLeuThrAlaIleIleMetValLeuGly 4365 : ctttattttatataacatGTTCGTCATGGTTTTACTTAACAGCAATAATTATGGTTCTTGGA : 4306 149 : ProLeuLeuSerAspLysGluLeuProThrGluGlyTrpLeuProPheSerIleGluProLe : 169 !||||||! !..! ! !!!||||||.!.!.! ! !|||||| !!:!!.!. ! SerLeuLeuIleSerAspProPheProThrAsnAlaValTyrProPheProValAsnPheGl 4305 : AGTCTGCTTATATCCGATCCTTTTCCAACCAACGCAGTATATCCATTCCCTGTTAACTTTGA : 4243 170 : uGlyIleTyrCysAlaValTyrValAsnHisValTyrCysIleLeuGlnThrLeuSerPheC : 190 ! !:!: !! !:!!!:!:!!:!!!!. !!:! ! !:!!||| ! !:!! !. uProLeuArgSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisA 4242 : ACCCTTGAGAAGCATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACG : 4180 191 : ysIlePheValAspPheThrIleValIleLeuPheSerPheProAlaAlaLysLeuAspVal : 210 .! !:!!:!! ! ! !!.!:!:|||!!. !||| !!.!!|||:::...:::::: la---SerMetAsnValLeuSerAlaLeuLeuLeuLeuPheThrThrAlaArgPheGluIle 4179 : CT---AGTATGAATGTGCTTTCTGCACTGTTATTGCTATTCACTACAGCtcgtttcgaaata : 4123 211 : LeuGlySerLysLeuGlnAsnValAsnAsnTyrAspMetLeuValSerCysIleLysGluHi : 231 ||| !!!!:!!|||::!|||||||||:!! !!!:! |||:!!!.! !!!!:|||:!!:! LeuMetThrGluLeuArgAsnValAsnAspIleGluThrLeuIleLysSerMetLysLysTy 4122 : ttgaTGACGGAGTTGAGGAATGTCAATGATATCGAAACACTGATTAAGAGTATGAAAAAGTA : 4060 232 : sGlnLysIle : 234 !..!! :!: rSerThrVal 4059 : TTCGACTGTG : 4049 vulgar: AmOr145 13 234 . LHQN01020543.1 5258 4048 - 218 M 86 258 5 0 2 I 0 546 3 0 2 M 91 273 G 1 0 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4049 5258 218 - . gene_id 1 ; sequence AmOr145 ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 5001 5258 . - . LHQN01020543.1 exonerate:protein2genome:local exon 5001 5258 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 4999 5000 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 4451 5000 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 4451 4452 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 4049 4450 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4049 4450 . - . insertions 0 ; deletions 1 LHQN01020543.1 exonerate:protein2genome:local similarity 4049 5258 218 - . alignment_id 1 ; Query AmOr145 ; Align 5259 14 258 ; Align 4451 100 273 ; Align 4178 192 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr143 Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 168 Query range: 92 -> 228 Target range: 4456 -> 4048 93 : PheGlnValLeuIleGluGluValLysSerPheValGluMetAlaAsnGluTyrGluIleLy : 113 !!.||| !||||||||||||:!!|||! !! ! !|||! |||!!. !||||||! ! ! LeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAs 4456 : TTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGA : 4396 114 : sIleLeuGlnGlyTyrValAsnArgTyrLysLysPhePheSerThrValSerMetGlyTyrI : 134 :!!!!!||| !!|||||||||!:!:!:... |||::: ||| !||| !!!:! pValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheT 4395 : CGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTT : 4333 135 : leSerThrAlaIleSerPheSerLeuMetProLeuPheSerAlaGlnLysLeuProAlaAsp : 154 !! !|||||||||! !.!. !||| !|||.!!! !:!!.!. !!!|||.!!:!! yrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPheProThrAsn 4332 : ACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACCAAC : 4273 155 : GlyTrpLeuProPheSerThrGluProPheGlyIleTyrCysIleIleTyrPheAsnHisVa : 175 !.! ! !|||||| !!..!.!. ! !:!: !!||||||!:!.!.:!!!!. AlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHisGlnSe 4272 : GCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCACCAATC : 4210 176 : lTyrCysIleLeuGlnThrAlaPheCysIlePheValAspPheThrIleValIleLeuPheS : 196 !!:! ! !:!!||| !||| ! ! !:!!:!! ! ! !!.!:!:|||!!. rPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeuLeuLeuL 4209 : GTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTGTTATTGC : 4147 197 : erPheProAlaAlaLysLeuAspValLeuArgSerLysLeuArgHisValAsnAsnTyrAsp : 216 !||| !!.!!|||:::...::::::||| !!!!:!!||||||:!!||||||:!! !!!: euPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAspIleGlu 4146 : TATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGATATCGAA : 4087 217 : ThrLeuValSerCysIleLysGluHisGlnLysIle : 228 ||||||:!!!.! !!!!:|||:!!:!!..!! :!: ThrLeuIleLysSerMetLysLysTyrSerThrVal 4086 : ACACTGATTAAGAGTATGAAAAAGTATTCGACTGTG : 4049 vulgar: AmOr143 92 228 . LHQN01020543.1 4456 4048 - 168 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4049 4456 168 - . gene_id 1 ; sequence AmOr143 ; gene_orientation . LHQN01020543.1 exonerate:protein2genome:local cds 4049 4456 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4049 4456 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4049 4456 168 - . alignment_id 1 ; Query AmOr143 ; Align 4457 93 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr130 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 307 -> 352 Target range: 25044 -> 26806 308 : LeuValIleIlePheLeuAsnAsnTyrAsnGlyGlnIleValMetAsnSerSerGlnGlu : 327 ||||||:!!:!:|||||||||! ||| !.!|||!!:||||||:!!!!!|||:!!! LeuValValValPheLeuAsnIleTyrProAlaGlnMetValMetAspThrSerGluVal 25045 : CTGGTGGTAGTGTTTTTGAACATATATCCGGCACAGATGGTGATGGACACAAGCGAGGTC : 25102 328 : LeuPheAspGlu{Le} >>>> Target Intron 1 >>>> {u}TyrAsnSerMet : 336 :!!||| !!:!!{ } 1627 bp {!}||| !!.!!! IlePheTyrGln{Al}++ ++{a}TyrTyrGlySer 25103 : ATATTCTATCAA{GC}gt.........................ag{G}TATTACGGAAGC : 26756 337 : TrpTyrPheMetProLeuLysAlaGlnLysIleLeuLeuLeuIleMet : 352 |||||| !||| !::!|||||||||:!:|||||||||:!::!! TrpTyrAlaAlaProThrArgAlaGlnLysLeuLeuLeuLeuValLeu 26757 : TGGTACGCGGCGCCAACGCGGGCACAAAAATTGCTGCTGCTGGTGTTG : 26806 vulgar: AmOr130 307 352 . KQ415081.1 25044 26806 + 107 M 24 72 S 0 2 5 0 2 I 0 1623 3 0 2 S 1 1 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 25045 26806 107 + . gene_id 1 ; sequence AmOr130 ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 25045 25118 . + . KQ415081.1 exonerate:protein2genome:local exon 25045 25118 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 25119 25120 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 25119 26745 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 26744 26745 . + . intron_id 0 ; splice_site "AG" KQ415081.1 exonerate:protein2genome:local cds 26746 26806 . + . KQ415081.1 exonerate:protein2genome:local exon 26746 26806 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 25045 26806 107 + . alignment_id 1 ; Query AmOr130 ; Align 25045 308 72 ; Align 26747 333 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr136 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 127 -> 214 Target range: 32488 -> 32749 128 : MetThrTyrValGlyIleAlaLeuCysSerIleLeuLeuLeuCysProIleThrLeuAsp : 147 .!...!|||:!!|||||| !! !! !:!!|||:!!! !!!! ||| !! !:!!||| PheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAsp 32489 : TTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGAC : 32546 148 : PheIleMetProLeuAsnGluSerArgThrArgIleValHisTyrValThrIlePheSer : 167 ! ||| !|||||||||||||||||| !!.!:!!:!!! |||!.! ! !!:!! ! ValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPhe 32547 : GTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTC : 32606 168 : AspLysSerIleIleTyrMetAspIleLeuCysLeuAsnTyrMetLeuLeuAlaIleLeu : 187 ! ! ! ... |||... !:!!...|||:!! :!: ! !!.!! !||| ValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeu 32607 : GTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTT : 32666 188 : ValIleLeuSerAlaThrCysThrGluSerIleLeuGlyLeuTyrSerTyrHisThrSer : 207 ! !:!: ! !||||||..!...:::||||||... ...::: !!:!|||..!!!! GlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCys 32667 : GGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGC : 32726 208 : IleMetPheLysIleIleGly : 214 !! |||!!.|||:!!||| AlaLysPheAsnIleLeuGly 32727 : GCCAAATTCAATATTCTCGGG : 32749 vulgar: AmOr136 127 214 . KQ415081.1 32488 32749 + 101 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32489 32749 101 + . gene_id 1 ; sequence AmOr136 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32489 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32489 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32489 32749 101 + . alignment_id 1 ; Query AmOr136 ; Align 32489 128 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr140TRA Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 136 -> 227 Target range: 1552 -> 1825 137 : ThrPheTyrTyrIleLeuTyrValTyrThrThrLeuPheValTyrLeuLeuLeuProThrIl : 157 :!!.!.|||!:!! !:!! !!! ! ! !! ! !!:!!!:! !! !:!! !!! !! SerLeuTyrPheThrValAsnGlyLeuPheCysTyrValIlePheThrSerValAlaIleTh 1553 : TCTCTGTATTTCACAGTAAACGGACTGTTTTGCTACGTTATATTCACCTCAGTGGCGATTAC : 1613 158 : eProLeuIleIleAspPheIleThrSerSerAsnHisSerGlnLysArgAsnPheLeuPheG : 178 |||! !:!!:!!|||.!!|||:!! !!!.!|||.!.|||!:: ! !:!!|||:!!!:! rProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValAspPheIleTyrP 1614 : GCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTCATTTATC : 1676 179 : luLeuAspTyrGlyMetAspLysGlnGlnTyrPheTyrTyrIleSerIleHisSerTyrIle : 198 ! !!||||||:!:|||:!!:!!:!!:!!!:!||| !:!:! ! !|||! ! ! ! roAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHisMetLeuCys 1677 : CTGCATACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCACATGCTCTGC : 1736 199 : GlyThrAlaIleValAlaAsnLeuIleAlaSerCysAspThrMetTyrMetLeuTyrAlaGl : 219 ! !! !.!!:!!||| ! !:!! ! !||||||||||||!!:|||||| ! !!.!|| ValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMetAsnIleValGl 1737 : GTGATAACTGTAGTGTTTTTCGTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCA : 1799 220 : nHisAlaTyrAlaLeuPheAlaIle : 227 |||||||! !!.!|||.!. !:!! nHisAlaCysGlyLeuLeuAsnVal 1800 : ACACGCGTGCGGATTACTGAACGTC : 1825 vulgar: AmOr140TRA 136 227 . LHQN01025741.1 1552 1825 + 123 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1553 1825 123 + . gene_id 1 ; sequence AmOr140TRA ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1553 1825 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1553 1825 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1553 1825 123 + . alignment_id 1 ; Query AmOr140TRA ; Align 1553 137 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr162FIX Target: KQ414573.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold16, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 614 Query range: 36 -> 218 Target range: 650720 -> 648657 37 : ValIleProIleValThrAlaGlnLeuIleLeuGlnPheGlyGlyMetMetThrAlaI : 56 :!!||| !.!! !.!!|||! !||| !||| !! !|||||||||:!:||||||! IleIleCysPheLysAlaAlaProLeuAlaLeu***ThrGlyGlyMetValThrAlaM 650720 : ATAATCTGTTTTAAAGCTGCACCATTGGCTTTATAGACTGGCGGAATGGTAACTGCTA : 650663 57 : leIleAlaGlyAspIleGluSerPheLeuGluSerPheAlaProLeuAlaIleSerLe : 75 !:! !! !||||||:!!|||||||||||||||||||||||||||||| !|||||||| etThrAspGlyAspValGluSerPheLeuGluSerPheAlaProLeuIleIleSerLe 650662 : TGACCGATGGTGACGTCGAATCGTTTTTAGAAAGTTTTGCACCCCTCATCATTAGTCT : 650606 76 : uMetCysPheValLysTyrIleAsnPheLeuTyrAsnPheAsnGln >>>> Targe : 91 |||||||.!! !|||||||||||||||...||||||:::...::: uMetCysLeuSerLysTyrIleAsnPhePheTyrAsnTyrLysLys++ 650605 : AATGTGTCTCTCTAagtatatcaattttttttacaattataaaaaggt.......... : 650556 92 : t Intron 1 >>>> MetLysArgLeuMetAspIleMetGlnGluAspTrpLysPh : 104 60 bp |||!:! !|||:!!:!!||||||||||||||||||!:!.! ++MetArgTyrLeuLeuAsnIleMetGlnGluAspTrpArgIl 650555 : ...............agATGAGGTATTTATTGAATATAATGCAAGAGGATTGGAGGAT : 650459 105 : eHisAlaArgLeuArgAsnGluTyrGluIleLeuCysGluHisTyrAlaIleAlaArg : 123 .:!! !!:!:!!!:!||||||!:!!!::!!|||||||||!!.||||||:!!!.!!:! eTyrLysLysValLysAsnGluPheAspValLeuCysGluGlnTyrAlaValGlyLys 650458 : ATATAAGAAAGTAAAGAACGAGTTTGACGTTCTTTGTGAACAATATGCAGTAGGAAAG : 650402 124 : LysIleThrThrSerPheVal{A} >>>> Target Intron 2 >>>> {la}P : 132 |||:!!||||||||||||!.!{|} 1457 bp {||}| LysLeuThrThrSerPheAla{A}++ ++{la}P 650401 : AAGCTTACTACTAGTTTTGCA{G}gt.........................ag{CT}T : 648918 133 : heLeuLeuGlyLeuThrThrProPheGlyAlaMetProLeuLeuLeuAsnIleGlyAs : 151 |||||!!!||||||! !|||||||||!.!||||||||||||||||||||| !!.!|| heLeuPheGlyLeuIleThrProPheAlaAlaMetProLeuLeuLeuAsnAlaAlaAs 648917 : TTTTATTCGGATTAATAACACCGTTTGCGGCAATGCCATTACTGCTGAATGCAGCTGA : 648861 152 : pAlaLeuGlyLeuCysAsnIleSerAspAspArgProLeuAlaPheArgValGluTyr : 170 |.!!||||||!!! !!|||:!:|||..!||||||||||||!.!||||||||||||:!! pThrLeuGlyPheSerAsnValSerSerAspArgProLeuValPheArgValGluHis 648860 : CACTTTAGGATTCAGCAATGTGTCCAGCGATCGACCGTTGGTATTTCGAGTTGAACAT : 648804 171 : PheValAspValAspLysTyrTyrTyrLeuLeuLeuValHisSerSerIleGlyThrL : 190 ||||||||||||||||||||||||||| !|||||||||||||||! !.!!||||||: PheValAspValAspLysTyrTyrTyrThrLeuLeuValHisSerTyrPheGlyThrI 648803 : TTCGTGGATGTGGACAAATACTACTATACCCTTTTAGTGCATTCATACTTTGGTACTA : 648744 191 : euGlyTyrThrValIleValLeuAlaIleAsnSerIleIleIleValTyrValLeuHi : 209 !!!.!!:!|||!.!||||||:!!:!!||||||||||||||| !|||||||||||||| leAlaPheThrAlaIleValValSerIleAsnSerIleIleAlaValTyrValLeuHi 648743 : TAGCATTTACTGCGATTGTTGTCTCTATCAACTCGATAATAGCTGTGTACGTCCTACA : 648687 210 : sGluCysGlyLeuCysGluIleLeuArg : 218 |||||||||||||||||||||||||||| sGluCysGlyLeuCysGluIleLeuArg 648686 : CGAATGCGGACTTTGTGAAATCTTAAGG : 648658 vulgar: AmOr162FIX 36 218 . KQ414573.1 650720 648657 - 614 M 54 162 5 0 2 I 0 56 3 0 2 M 40 120 S 0 1 5 0 2 I 0 1453 3 0 2 S 1 2 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414573.1 exonerate:protein2genome:local gene 648658 650720 614 - . gene_id 1 ; sequence AmOr162FIX ; gene_orientation + KQ414573.1 exonerate:protein2genome:local cds 650559 650720 . - . KQ414573.1 exonerate:protein2genome:local exon 650559 650720 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local splice5 650557 650558 . - . intron_id 1 ; splice_site "gT" KQ414573.1 exonerate:protein2genome:local intron 650499 650558 . - . intron_id 1 KQ414573.1 exonerate:protein2genome:local splice3 650499 650500 . - . intron_id 0 ; splice_site "AG" KQ414573.1 exonerate:protein2genome:local cds 650378 650498 . - . KQ414573.1 exonerate:protein2genome:local exon 650378 650498 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local splice5 650376 650377 . - . intron_id 2 ; splice_site "GT" KQ414573.1 exonerate:protein2genome:local intron 648921 650377 . - . intron_id 2 KQ414573.1 exonerate:protein2genome:local splice3 648921 648922 . - . intron_id 1 ; splice_site "AG" KQ414573.1 exonerate:protein2genome:local cds 648658 648920 . - . KQ414573.1 exonerate:protein2genome:local exon 648658 648920 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local similarity 648658 650720 614 - . alignment_id 1 ; Query AmOr162FIX ; Align 650721 37 162 ; Align 650499 91 120 ; Align 648919 132 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr162FIX Target: KQ414573.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold16, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 436 Query range: 215 -> 335 Target range: 640301 -> 639745 216 : IleLeuArgValLysLeuGluAsnPheValGluThrAspAlaMetAspIleGluLeuA : 235 :!:!!!||||||||||||||||||||||||||| !|||.!!!!::!!:!:||||||! LeuPheArgValLysLeuGluAsnPheValGluAspAspThrIleAsnValGluLeuH 640301 : CTGTTTAGAGTGAAACTAGAAAATTTCGTGGAAGATGATACCATAAACGTGGAACTGC : 640244 236 : rgProProAsnLysLysAspLysTrpTyrGlnAsnAlaArgAspCysValLeuLeuHi : 254 .!! ! !!!.:::! !|||!:!|||||||||||| !|||!!:|||||||||||||| isLeuAsnLysArgIleAspArgTrpTyrGlnAsnPheArgGluCysValLeuLeuHi 640243 : ATCTCAACAAGCGCATAGACAGATGGTATCAAAATTTCAGAGAGTGTGTACTCTTGCA : 640187 255 : sLysArgIleIle{Gl} >>>> Target Intron 1 >>>> {u}PheAlaLys : 262 ||||!.!||||||{||} 115 bp {|}||||||!!. sLysHisIleIle{Gl}++ ++{u}PheAlaAsn 640186 : TAAGCACATAATC{GA}gt.........................ag{A}TTTGCTAAT : 640048 263 : IleLeuGluAspThrAsnThrThrSerTyrLeuLeuGlnLeuGlyPheAsnMetIleC : 282 :!!||||||!!:.!!||||||||||||||||||!!!|||||||||||||||||||||| LeuLeuGluGluAlaAsnThrThrSerTyrLeuPheGlnLeuGlyPheAsnMetIleC 640047 : CTACTTGAGGAAGCAAATACCACGTCTTATTTGTTCCAGTTGGGGTTTAACATGATTT : 639988 283 : ysIleSerPheThrGlnPheGln >>>> Target Intron 2 >>>> AlaIle : 291 ||:!!|||||||||||||||||| 81 bp .!!:!! ysValSerPheThrGlnPheGln++ ++ThrVal 639987 : GCGTAAGCTTCACACAGTTTCAGgt.........................agACGGTA : 639880 292 : IleAsnIleGluAspThrProLysValLeuArgTyrValSerIleThrIleAlaLeuL : 311 ||||||:!!:!!||||||||||||!.!|||||||||||||||:!!||||||..!|||| IleAsnLeuGlnAspThrProLysAlaLeuArgTyrValSerValThrIleCysLeuL 639879 : ATAAATTTACAAGATACACCCAAGGCTCTCAGATATGTTTCAGTCACGATTTGCTTGT : 639820 312 : euCysAspLeuLeuPheValSerTrpThrGlyGlnGlnLeuSerAsnSerThrGluAr : 330 |||||||||||||||||||||||||| !!||||||!:!||||||:!!! !|||||||| euCysAspLeuLeuPheValSerTrpProGlyGlnArgLeuSerAspTyrThrGluAr 639819 : TATGCGACCTTTTGTTTGTAAGCTGGCCAGGACAACGATTGTCCGATTATACTGAACG : 639763 331 : gIlePheGluTyrThr : 335 |||||||||||||||| gIlePheGluTyrThr 639762 : CATCTTCGAATATACG : 639746 vulgar: AmOr162FIX 215 335 . KQ414573.1 640301 639745 - 436 M 43 129 S 0 2 5 0 2 I 0 111 3 0 2 S 1 1 M 30 90 5 0 2 I 0 77 3 0 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414573.1 exonerate:protein2genome:local gene 639746 640301 436 - . gene_id 2 ; sequence AmOr162FIX ; gene_orientation + KQ414573.1 exonerate:protein2genome:local cds 640171 640301 . - . KQ414573.1 exonerate:protein2genome:local exon 640171 640301 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local splice5 640169 640170 . - . intron_id 1 ; splice_site "GT" KQ414573.1 exonerate:protein2genome:local intron 640056 640170 . - . intron_id 1 KQ414573.1 exonerate:protein2genome:local splice3 640056 640057 . - . intron_id 0 ; splice_site "aG" KQ414573.1 exonerate:protein2genome:local cds 639965 640055 . - . KQ414573.1 exonerate:protein2genome:local exon 639965 640055 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local splice5 639963 639964 . - . intron_id 2 ; splice_site "GT" KQ414573.1 exonerate:protein2genome:local intron 639884 639964 . - . intron_id 2 KQ414573.1 exonerate:protein2genome:local splice3 639884 639885 . - . intron_id 1 ; splice_site "AG" KQ414573.1 exonerate:protein2genome:local cds 639746 639883 . - . KQ414573.1 exonerate:protein2genome:local exon 639746 639883 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local similarity 639746 640301 436 - . alignment_id 2 ; Query AmOr162FIX ; Align 640302 216 129 ; Align 640055 260 90 ; Align 639884 290 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr162FIX Target: KQ414573.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold16, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 238 Query range: 329 -> 395 Target range: 629001 -> 628481 330 : ArgIlePheGluTyrThrThrAsnGlyLysTrpTyrGlnSerSerIleSerCysArgL : 349 :::|||::: ::: ||||||||||||||||||:!!|||||| !!:!||||||| LysIleTyrIlePheArgThrAsnGlyLysTrpTyrGluSerSerTyrAsnCysArgL 629001 : aaaatatatattttcaggACAAATGGCAAATGGTATGAATCGTCATATAATTGCAGAA : 628944 350 : ysLeuLeuAlaIleMetLeuSerLysSerIleAlaProLeuArgLeuThrAlaCysLy : 368 |||||||| !||||||||||||||||||:!!.!! !!|||!:!|||||||||||||| ysLeuLeuIleIleMetLeuSerLysSerLeuThrSerLeuLysLeuThrAlaCysLy 628943 : AACTTCTGATAATAATGTTATCAAAAAGCTTAACATCTCTTAAATTAACGGCTTGCAA : 628887 369 : sLeuTyrThrLeuAsnLeuGluSerPheThrThr >>>> Target Intron 1 > : 380 |:!!||||||||||||||||||||||||!.!.!! 322 bp sIleTyrThrLeuAsnLeuGluSerPheAsnAla++ 628886 : AATCTACACattaaatttagaaagttTCAATGCGgt...................... : 628849 381 : >>> IleAlaLysThrSerValSerTyrThrMetValLeuCysSerLeuGln : 395 :!!!.!:!!|||||| !!|||||||||||||||||||||||||||||| ++ValValGlnThrSerPheSerTyrThrMetValLeuCysSerLeuGln 628848 : ...agGTTGTACAAACATCATTCTCTTACACCATGGTTTTATGCTCTCTTCAA : 628482 vulgar: AmOr162FIX 329 395 . KQ414573.1 629001 628481 - 238 M 50 150 5 0 2 I 0 318 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414573.1 exonerate:protein2genome:local gene 628482 629001 238 - . gene_id 3 ; sequence AmOr162FIX ; gene_orientation + KQ414573.1 exonerate:protein2genome:local cds 628852 629001 . - . KQ414573.1 exonerate:protein2genome:local exon 628852 629001 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local splice5 628850 628851 . - . intron_id 1 ; splice_site "GT" KQ414573.1 exonerate:protein2genome:local intron 628530 628851 . - . intron_id 1 KQ414573.1 exonerate:protein2genome:local splice3 628530 628531 . - . intron_id 0 ; splice_site "AG" KQ414573.1 exonerate:protein2genome:local cds 628482 628529 . - . KQ414573.1 exonerate:protein2genome:local exon 628482 628529 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local similarity 628482 629001 238 - . alignment_id 3 ; Query AmOr162FIX ; Align 629002 330 150 ; Align 628530 380 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr162FIX Target: KQ414573.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold16, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 174 Query range: 0 -> 48 Target range: 653065 -> 652921 1 : MetAspGlyIleGlnHisGluTyrLeuArgValAsnLysTyrLeuLeuPheValValS : 20 ||||||... |||:::|||||||||||| !!|||||||||!!!||||||:!!:!!. MetAspAsnThrGlnTyrGluTyrLeuArgPheAsnLysTyrPheLeuPheMetIleG 653065 : atggataatactcaatatgagtatTTGCGATTCAACAAGTATTTTCTGTTTATGATCG : 653008 21 : erAlaTrpProTyrGlnAlaIleLeuGlnArgSerLeuIleGlyIleIleValIlePr : 39 !!!.!||||||||||||.!!:!!|||||||||! !|||:::||||||||| ||||| lyValTrpProTyrGlnThrValLeuGlnArgIleLeuValGlyIleIlePheIlePr 653007 : GCGTATGGCCTTATCAAACTGTATTGCAAAGGATTTtggttggaattattttcattcc : 652951 40 : oIleValThrAlaGlnLeuIleLeuGln : 48 ||||:!!:!!|||||| !||||||||| oIleIleSerAlaGlnThrIleLeuGln 652950 : aaTTATTTCTGCTCAAACAATTCTTCAG : 652922 vulgar: AmOr162FIX 0 48 . KQ414573.1 653065 652921 - 174 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414573.1 exonerate:protein2genome:local gene 652922 653065 174 - . gene_id 4 ; sequence AmOr162FIX ; gene_orientation . KQ414573.1 exonerate:protein2genome:local cds 652922 653065 . - . KQ414573.1 exonerate:protein2genome:local exon 652922 653065 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local similarity 652922 653065 174 - . alignment_id 4 ; Query AmOr162FIX ; Align 653066 1 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr164FIX Target: KQ414583.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold34, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 314 -> 365 Target range: 620535 -> 620688 315 : LysSerGluAsnIleSerTrpIleAlaTyrAsnSerAsnTrpTyrGluLeuSerIleT : 334 :!!||| !||||||!!!!:: !||||||! !:!||||||!::.!. !!!!! GlnSerMetAsnIleCysPheAlaAlaTyrMetAsnAsnTrpTrpHisAsnThrLysA 620536 : CAGAGCATGAATATATGTTTTGCCGCTTATATGAATAATTGGTGGCATAATACCAAGG : 620593 335 : yrGluIleArgValLeuLeuLeuLeuIleMetArgSerGlnLysProLeuThrLeuTh : 353 !! ! !|||!.!||||||:!!:!!!!: !:!:!!|||::!|||:!!! !||||| spPheLysArgAlaLeuLeuValValMetSerLysAlaGlnArgProIleIleLeuTh 620594 : ATTTTAAACGAGCCTTGCTCGTTGTAATGTCAAAAGCTCAACGACCTATTATTTTAAC : 620650 354 : rIleGlyLysTyrMetLysLeuSerLeuGluThrPhe : 365 |:!!|||!!. !|||:!!||||||||||||!.!||| rValGlyAsnIleMetGluLeuSerLeuGluAsnPhe 620651 : TGTTGGAAATATTATGGAATTATCTTTAGAGAATTTC : 620688 vulgar: AmOr164FIX 314 365 . KQ414583.1 620535 620688 + 106 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414583.1 exonerate:protein2genome:local gene 620536 620688 106 + . gene_id 1 ; sequence AmOr164FIX ; gene_orientation . KQ414583.1 exonerate:protein2genome:local cds 620536 620688 . + . KQ414583.1 exonerate:protein2genome:local exon 620536 620688 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local similarity 620536 620688 106 + . alignment_id 1 ; Query AmOr164FIX ; Align 620536 315 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr166JOI Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 236 -> 359 Target range: 1306919 -> 1306556 237 : LeuAlaGluLysIleGluLysPhePheThrTyrIleAlaLeuSerGlnLeuIleSe : 255 :!!!.!.!. :::.........|||||| !|||!.!!!! !||||||:!!!! ValValAsnAspValAsnAsnLeuPheThrProIleValPheValGlnLeuLeuTh 1306919 : GTGGTGAATGatgtgaataatttatttactccCATCGTTTTCGTACAACTTCTTAC : 1306865 256 : rAsnThrLeuIleThrCysCysLeuGlyTyrLeuIleValIleThrLeuHisLeuG : 274 !!:! !:!!:!!! !|||! !|||!:! !:!! !!! !! !! rSerGlyIleValIleCysLeuSerGlyPheAlaVal---------PheAspAsnA 1306864 : AAGCGGAATAGTAATTTGTTTAAGTGGATTCGCGGTT---------TTCGATAACG : 1306817 275 : lyAsnAsnIleIleLeuIleLysTyrIleMetPheTyrValAlaValCysSerGlu : 292 ! !..!! ! !:!!:!:||||||:!! !:!! !:!!:!!!! ! !:!! spAlaArgThrAspIleLeuLysTyrValSerTyrLeuSerSerIleTrpLeuGln 1306816 : ACGCCCGTACCGATATTCTGAAATACGTATCTTATTTGTCCTCGATTTGGTTGCAA : 1306763 293 : AlaPheIleTyrCysPheAlaGlyGluTyrLeuSerIleLysSerLysLeuIleAl : 311 !!!.:!!!::|||!!. !!|||||| !||| ! !:!!||| ! !|||!. LeuLeuLeuTrpCysLeuProGlyGluIleLeuValGlnGluSerLeuGluIleGl 1306762 : CTTTTGTTATGGTGTTTGCCCGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGG : 1306706 312 : aAspThrAlaTyr<->GluPheLeuTrpTyrAsnMetAsnProAsnGluSerArgL : 329 ! !!..!!.!||| .!. ! ! !|||||||||:!! |||! ! ! ..!||| yHisValValTyrLeuAsnValProTrpTyrAsnLeuProProIleTyrGlnArgL 1306705 : ACACGTAGTCTACTTAAATGTACCATGGTACAATTTGCCGCCAATTTACCAGAGAA : 1306649 330 : euLeuIleProIleIleLeuArgAlaGlnArgGlyPheThrPheThrPheGlyLys : 347 !||| ! !!!:|||||||||||||||!:! !! !!:!.!!||| !! ! ysLeuCysMetMetIleLeuArgAlaGlnGlnTyrCysSerIleThrAlaLeuThr 1306648 : AACTTTGCATGATGATCCTTAGGGCACAACAATATTGCAGCATCACGGCATTAACG : 1306595 348 : PheAlaThrLeuSerMetGluSerPheThrAlaIle : 359 ||| !|||||||||!!:.!.!!!!!.|||::!:!: PheArgThrLeuSerIleHisThrLeuThrSerVal 1306594 : TTTCGAACGTTGTCTATTCACACGTTAACGAGCGTG : 1306557 vulgar: AmOr166JOI 236 359 . KQ414608.1 1306919 1306556 - 105 M 31 93 G 3 0 M 45 135 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1306557 1306919 105 - . gene_id 1 ; sequence AmOr166JOI ; gene_orientation . KQ414608.1 exonerate:protein2genome:local cds 1306557 1306919 . - . KQ414608.1 exonerate:protein2genome:local exon 1306557 1306919 . - . insertions 3 ; deletions 3 KQ414608.1 exonerate:protein2genome:local similarity 1306557 1306919 105 - . alignment_id 1 ; Query AmOr166JOI ; Align 1306920 237 93 ; Align 1306827 271 135 ; Align 1306689 316 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr160 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 321 -> 377 Target range: 204772 -> 204940 322 : GluSerSerGluValGlnMetAlaCysTyrPheThrAsnTrpTyrAspLeuProGluG : 341 :!!|||..!|||||| ! :!:|||...||| !.!.|||! :!!||| !..!. LysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerA 204773 : AAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGA : 204830 342 : lnTyrThrArgSerLeuIlePheCysIleAlaArgAlaGlnLysProLeuTyrLeuTh : 360 !. ! .!!!:!|||||||||!!. !!!:||||||||||||!:!||||||! !||||| snLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuTh 204831 : ACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAAC : 204887 361 : rAlaGlyLysPheTyrValPheSerLeuGluThrPheAlaValIleValLys : 377 ||||||||||...::: ...!!!:!! !||||||..! !:!!..!:!! rAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsnValThrGln 204888 : CGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTCACTCAG : 204940 vulgar: AmOr160 321 377 . KQ414617.1 204772 204940 + 113 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204773 204940 113 + . gene_id 1 ; sequence AmOr160 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204773 204940 . + . KQ414617.1 exonerate:protein2genome:local exon 204773 204940 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204773 204940 113 + . alignment_id 1 ; Query AmOr160 ; Align 204773 322 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr166JOI Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 302 -> 356 Target range: 204763 -> 204925 303 : LeuSerIleLysSerLysLeuIleAlaAspThrAlaTyrGluPheLeuTrpTyrAsnM : 322 |||||||||||||||:!! !:!! !! !.!!|||||||||! ! !|||! |||: LeuSerIleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnL 204764 : ttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATT : 204821 323 : etAsnProAsnGluSerArgLeuLeuIleProIleIleLeuArgAlaGlnArgGlyPh : 341 !!!!. !!|||:!!:!!!:! !|||||| !|||!!: !|||||||||||| !.! euLysSerAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLe 204822 : TGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCT : 204878 342 : eThrPheThrPheGlyLysPheAlaThrLeuSerMetGluSerPhe : 356 ! !!!.||| ||||||... ::!!!!||| !!!!||| uCysLeuThrAlaGlyLysLeuPheProMetThrMetLeuThrPhe 204879 : CTGTTTAACCGcaggaaaattatttcctatGACGATGCTAACGTTT : 204925 vulgar: AmOr166JOI 302 356 . KQ414617.1 204763 204925 + 101 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204764 204925 101 + . gene_id 1 ; sequence AmOr166JOI ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204764 204925 . + . KQ414617.1 exonerate:protein2genome:local exon 204764 204925 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204764 204925 101 + . alignment_id 1 ; Query AmOr166JOI ; Align 204764 303 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr155JOI Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1094 Query range: 0 -> 373 Target range: 1053857 -> 1051853 1 : MetLeuLysLysAlaThrProGluLysIleIleAspIleIleArgPheSerValAl : 19 |||||||||:!! !||||||||||||:!!|||||||||||| !!||||||||||| MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : aIleCysPheCysTrpProTyrProLeuAsnSerSerArgAsnGlnIlePheGlyP : 38 |:!:... !!||||||||| ! !! !::!:!!|||!:! !|||:!! ...| aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 39 : heLysValLeuGlnIleSerThrMetValSerAlaCysIleMetLeuLeuProLeu : 56 |||||:::||||||||| ::! !:!!|||||| !|||:!:|||||||||||| heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 57 : LeuTyrSerIleTyrLeuHisAsnAspAspValIleHisIleSerLysCysIleCy : 75 |||||||||! !||||||||| !|||||||||||| !:!!|||:!! !!||||| LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 76 : sIleSerIleGlyValThrGlnLeuIleValGlnThrLeuValCysPheIleLysH : 94 |:!:|||!!:|||||| !|||:!!|||:!!||||||:!!:!!||||||! !!!.: sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCysPheThrAsnT 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGTTTCACCAACT : 1053578 95 : isAsnSerLeuGln >>>> Target Intron 1 >>>> ArgValValGlyG : 103 !!:!! !|||||| 613 bp |||:!!:!! !| yrAspLeuLeuGln++ ++ArgIleIleThrG 1053577 : ACGACCTTCTGCAGgt.........................agCGAATAATTACAG : 1052938 104 : luMetMetLysCysValLysGluAlaGlnGlnAsnGluIleGluIlePheSerLys : 121 |||||!!:! !! !|||||||||||||||||| !|||! ||||||.!! !!!. luMetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLeuHisAsn 1052937 : AAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCACAAC : 1052884 122 : TyrIleGluLysCysLysIlePheTyrGlySerSerIleIlePheSerTyrLeuTh : 140 ||||||:!!|||||||||:!!|||||||||.!!|||:!!|||!::!!!|||||| TyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrTyrLeuCy 1052883 : TATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACATACCTCTG : 1052827 141 : rSerThrAlaPheMetLeuGlyProIleIleLeuProIleSerPheProPheAspA : 159 !:!!|||..!|||:!:|||||||||:!!:!!||||||! ! !!|||||| !..!| sAlaThrCysPheValLeuGlyProValValLeuProAsnProPheProSerSerA 1052826 : TGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGCAGTG : 1052770 160 : laGluTyrProPheHisValAsnHisSerLeuValThrIleIleIleTyrIleHis : 177 ||||||||||||||!.!||||||!.!!!!! !:!!!.! !|||:!!|||:!:||| laGluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyrLeuHis 1052769 : CAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTACCTGCAC : 1052716 178 : GlnSerLeuValGlyTyrGlnCysSerAlaAsnValCysAlaSerValPheGlyAl : 196 ||||||!!!:!!.!!!:!|||! !||||||:!!:!!|||!.!|||:!!|||||||| GlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePheGlyAl 1052715 : CAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTTCGGAGC : 1052659 197 : aLeuLeuLeuTrpPheThrValAlaArgPheGluCysLeuIleValGluPheGlnL : 215 |||||||||||||.!!|||!.!|||||||||.!.||||||! !:!!||| !!|||: aLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluValGlnG 1052658 : TCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTTCAAC : 1052602 216 : ysCysThrAspIleAspMetValIleAlaCysValLysLysGlnValGlnLeuArg : 233 !! !!:!!..!||| !!|||:!!||| !|||||||||||||||:!!! !|||||| lnSerSerSerIleHisMetLeuIleIleCysValLysLysGlnLeuLeuLeuArg 1052601 : AAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCTACTACTGAGG : 1052548 234 : {Se} >>>> Target Intron 2 >>>> {r}TyrAlaLysGluValIleLy : 241 {!!} 65 bp {!}|||||||||||||||:!! ! {Ar}++ ++{g}TyrAlaLysGluValValAs 1052547 : {AG}gt.........................ag{G}TACGCCAAAGAAGTGGTTGA : 1052459 242 : sCysPheArgTyrIleValLeuTyrTyrIleThrIleThrThrPheAlaLeuIleI : 260 !!|||||| !||||||||| !! !|||.!!!!:!:!! !!!.||||||! !: pGlyPheArgLeuIleValLeuAsnAlaIleAlaMetSerIleLeuAlaLeuThrL 1052458 : CGGTTTTCGGCTTATAGTACTCAACGCTATAGCAATGAGCATTTTGGCTCTTACTC : 1052402 261 : leSerCysIleIleLeuLeuMet >>>> Target Intron 3 >>>> AsnV : 269 !!||| !!|||! !|||:!!||| 62 bp .!.: euSerSerIleThrLeuIleMet++ ++GluI 1052401 : TAAGTAGTATTACATTAATAATGgt.........................agGAAA : 1052313 270 : alProLeuIleValLysMetGlnPheIleIleIleCysValThrIleMetThrGlu : 287 !!|||||||||||||||:!!||||||:!!! !:!! !! !!|||:!!:!:.!!||| leProLeuIleValLysValGlnPheValThrValSerPheThrValLeuAlaGlu 1052312 : TACCGTTAATTGTGAAAGTGCAATTCGTAACTGTAAGCTTCACTGTACTCGCAGAA : 1052259 288 : IleTyrIleTyrAlaTrpProAlaAspTyrValLysAsnMet >>>> Target : 302 ||||||!!:||||||||| !!|||||||||:!!|||:!!||| 80 IleTyrMetTyrAlaTrpSerAlaAspTyrMetLysAspMet++ 1052258 : ATTTATATGTACGCATGGTCAGCTGACTACATGAAAGACATGgt............ : 1052212 303 : Intron 4 >>>> SerIleAsnIleSerLysSerValTyrGluLeuSerTrpTy : 315 bp ||| !!!.:!!|||:!!|||||||||!!:|||!!!||||| ++SerAlaLysValSerGlnSerValTyrAspLeuThrTrpTy 1052211 : .............agAGTGCAAAGGTTTCACAAAGTGTGTATGATTTAACGTGGTA : 1052095 316 : rGluGlnThrLeuGluMetArgLysTyrLeuLeuAsnValLeuIleTyrGlnLysP : 334 |! !|||||||||||||||:::||| :::||| :::|||:!!:!!|||:!!| rGlyGlnThrLeuGluMetGlnLysAsnValLeuTyrIleLeuValHisGlnGluP 1052094 : CGGACAAACATtggaaatgcagaaaaatgtattatacatattgGTACACCAAGAAC : 1052038 335 : roIleThrPheSerIleSerCysIleValProGluLeuThrLeuArgTyrTyrCys : 352 ||:!!! !.!.|||:!!|||||||||||||||||||||:!!||||||||||||||| roValIleLeuSerValSerCysIleValProGluLeuSerLeuArgTyrTyrCys 1052037 : CGGTAATTCTGTCAGTTAGTTGCATCGTGCCGGAGCTTTCTCTTCGTTATTATTGC : 1051984 353 : Ser >>>> Target Intron 5 >>>> TyrLeuSerAsnAlaPheSerIle : 361 ||| 65 bp |||||||||||||||||||||:!! Ser++ ++TyrLeuSerAsnAlaPheSerVal 1051983 : TCGgt.........................agTACCTGTCAAATGCGTTCTCGGTT : 1051892 362 : PheThrThrLeuArgIleLeuLeuGluAspAsnSer : 373 ||||||.!!||||||:!!:!!|||!!:! !!.||| PheThrAlaLeuArgValValLeuAspAlaLysSer 1051891 : TTCACCGCTTTGCGCGTCGTGCTGGATGCAAAATCA : 1051854 vulgar: AmOr155JOI 0 373 . KQ414618.1 1053857 1051853 - 1094 M 98 294 5 0 2 I 0 609 3 0 2 M 135 405 S 0 2 5 0 2 I 0 61 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 34 102 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 61 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1051854 1053857 1094 - . gene_id 1 ; sequence AmOr155JOI ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1053564 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053564 1053857 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1053562 1053563 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052951 1053563 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052951 1052952 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052544 1052950 . - . KQ414618.1 exonerate:protein2genome:local exon 1052544 1052950 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052542 1052543 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052479 1052543 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1052479 1052480 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052379 1052478 . - . KQ414618.1 exonerate:protein2genome:local exon 1052379 1052478 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052377 1052378 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052317 1052378 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1052317 1052318 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052215 1052316 . - . KQ414618.1 exonerate:protein2genome:local exon 1052215 1052316 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052213 1052214 . - . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052135 1052214 . - . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 1052135 1052136 . - . intron_id 3 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051979 1052134 . - . KQ414618.1 exonerate:protein2genome:local exon 1051979 1052134 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1051977 1051978 . - . intron_id 5 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1051914 1051978 . - . intron_id 5 KQ414618.1 exonerate:protein2genome:local splice3 1051914 1051915 . - . intron_id 4 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051854 1051913 . - . KQ414618.1 exonerate:protein2genome:local exon 1051854 1051913 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1051854 1053857 1094 - . alignment_id 1 ; Query AmOr155JOI ; Align 1053858 1 294 ; Align 1052951 99 405 ; Align 1052478 235 99 ; Align 1052317 268 102 ; Align 1052135 302 156 ; Align 1051914 354 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr155JOI Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 446 Query range: 0 -> 228 Target range: 1030017 -> 1028783 1 : MetLeuLysLysAlaThrProGluLysIleIleAspIleIleArgPheSerValAl : 19 ||||||||| ! !!!:!||||||!:! !|||..!:!!:!!!:! !!! !..!|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1030017 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1029963 20 : aIleCysPheCysTrpProTyrProLeuAsnSerSerArgAsnGlnIlePheGlyP : 38 |.!! !! !||||||||| !|||! !!..:!!!!!!:!::!! !:!:.!! !| aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1029962 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1029906 39 : heLysValLeuGlnIleSerThrMetValSerAlaCysIleMetLeuLeuProLeu : 56 |||||:!!|||::! !! ! !:!::!!!:!|||! :!::!!!!!||||||||| heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1029905 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1029852 57 : LeuTyrSerIleTyrLeuHisAsnAspAspValIleHisIleSerLysCysIleCy : 75 ||||||:!!:!::!!:!!|||...:!!|||!.! :!!:!!:!!|||..! !|| LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1029851 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1029795 76 : sIleSerIleGlyValThrGlnLeuIleValGlnThrLeuValCysPheIleLysH : 94 |:!:!!!:!!!.!:::...|||:::... ||||||!!!||||||.!! !:!!: sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1029794 : CCTGACGCTTGCCctcgtgcaaatatttttccagacTTTCGTTTGCATCGGCCAAT : 1029738 95 : isAsnSerLeuGln >>>> Target Intron 1 >>>> ArgValValGlyG : 103 !!:!! !!!!||| 550 bp !:!:!!:!!! !| yrAspHisPheGln++ ++LysLeuIleGluG 1029737 : ACGATCATTTTCAGgt.........................agAAACTAATCGAAG : 1029161 104 : luMetMetLysCysValLysGluAlaGlnGlnAsnGluIleGluIlePheSerLys : 121 |||||! !! ||| !:!! !|||:!!! ! !!|||! !!!::!!|||..!::! luMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheGlnArg 1029160 : AAATGAAGATTTGCTGTGAAACAGCGAAACCATACGAAAGAGACGTCTTTCAACGA : 1029107 122 : TyrIleGluLysCysLysIlePheTyrGlySerSerIleIlePheSerTyrLeuTh : 140 |||:!!!!:|||! !...:!!||||||! !!!!!!! !::! !|||||||| TyrValAspLysTyrSerLeuPheTyrValThrCysSerSerTrpPheTyrLeuTh 1029106 : TACGTCGATAAATACTCTTTATTTTACGTAACATGTTCGTCGTGGTTTTACTTAAC : 1029050 141 : rSerThrAlaPheMetLeuGlyProIleIleLeuProIleSerPheProPheAspA : 159 |:!!..! !.!.:!:|||||| ! |||:!! !! ! !!|||||| !:!!| rAlaValIleMetValLeuGlySerArgIleIleSerAspProPheProThrAsnA 1029049 : AGCAGTTATTATGGTTCTGGGAAGTCGGATTATATCTGATCCTTTTCCAACCAACG : 1028993 160 : laGluTyrProPheHisValAsnHisSerLeuValThrIleIleIleTyrIleHis : 177 ||! !|||||||||! !|||||| !..!! !:!!! !! !||||||!:!!!:||| laValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHis 1028992 : CCGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGTATCATTTTTATGCAC : 1028939 178 : GlnSerLeuValGlyTyrGlnCysSerAlaAsnValCysAlaSerValPheGlyAl : 196 ||||||!!!|||||| ||||||:!!|||:!!..! !! !!:!|||.!. !|| GlnSerPheValGlyIleGlnCysAlaAlaHisThrSerMetAsnValLeuThrAl 1028938 : CAATCGTTCGTTGGCATACAGTGTGCTGCACACACTAGTATGAATGTGCTAACTGC : 1028882 197 : aLeuLeuLeuTrpPheThrValAlaArgPheGluCysLeuIleValGluPheGlnL : 215 |||||||||| |||.!!!.!|||||||||||| |||!!::!!|||.!.::!! aLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuMetMetGluLeuArgA 1028881 : ATTGTTATTACTATTTGCTGCAGCTCGTTTCGAGATACTGATGATGGAGCTGAGGA : 1028825 216 : ysCysThrAspIleAspMetValIleAlaCysValLysLys : 228 !. !!:!||||||!!:! :!!||| !|||:!!|||||| snValSerAspIleGluThrLeuIleLysCysMetLysLys 1028824 : ATGTCAGTGACATTGAAACACTGATTAAATGTATGAAAAAG : 1028784 vulgar: AmOr155JOI 0 228 . KQ414618.1 1030017 1028783 - 446 M 98 294 5 0 2 I 0 546 3 0 2 M 130 390 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028784 1030017 446 - . gene_id 2 ; sequence AmOr155JOI ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1029724 1030017 . - . KQ414618.1 exonerate:protein2genome:local exon 1029724 1030017 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1029722 1029723 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1029174 1029723 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1029174 1029175 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028784 1029173 . - . KQ414618.1 exonerate:protein2genome:local exon 1028784 1029173 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028784 1030017 446 - . alignment_id 2 ; Query AmOr155JOI ; Align 1030018 1 294 ; Align 1029174 99 390 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr155JOI Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 411 Query range: 0 -> 233 Target range: 1039184 -> 1037935 1 : MetLeuLysLysAlaThrProGluLysIleIleAspIleIleArgPheSerValAl : 19 ||||||||| ! !!!:!||||||!:! !|||..!:!!:!!!:! !!! !..!|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1039184 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1039130 20 : aIleCysPheCysTrpProTyrProLeuAsnSerSerArgAsnGlnIlePheGlyP : 38 |.!! !! !||||||||| !|||! !!..:!!!!!!:!::!! !:!:.!! !| aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1039129 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1039073 39 : heLysValLeuGlnIleSerThrMetValSerAlaCysIleMetLeuLeuProLeu : 56 |||||:!!|||::! !! ! !:!::!!!:!|||! :!::!!!!!||||||||| heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1039072 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1039019 57 : LeuTyrSerIleTyrLeuHisAsnAspAspValIleHisIleSerLysCysIleCy : 75 ||||||:!!:!::!!:!!|||...:!!|||!.! :!!:!!:!!|||..! !|| LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1039018 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1038962 76 : sIleSerIleGlyValThrGlnLeuIleValGlnThrLeuValCysPheIleLysH : 94 |:!:!!!:!!!.!:::...|||:::... ||||||...||||||.!! !:!!: sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1038961 : CCTGACGCTTGCTctcgtgcaaatatttttccaaactttcgttTGCATCGGTCAAT : 1038905 95 : is{A} >>>> Target Intron 1 >>>> {sn}SerLeuGlnArgValVal : 101 !!{:} 550 bp {!!}!!!||||||!:!:!!:!! yr{A}-+ -+{sp}ThrLeuGlnLysLeuIle 1038904 : AC{G}at.........................tg{AC}ACGTTGCAGAAACTAATC : 1038334 102 : GlyGluMetMetLysCysValLysGluAlaGlnGlnAsnGluIleGluIlePheSe : 120 ! !||||||! !! ||| !:!! !|||:!!! ! !!|||! !!!::!!|||.. GluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheGl 1038333 : GAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGACGTCTTCCA : 1038277 121 : rLysTyrIleGluLysCysLysIlePheTyrGlySerSerIleIlePheSerTyrL : 139 !::!|||:!!.!.||| ...:::|||||| ::: !! !!::! !|||| nArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheTyrL 1038276 : ACGATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTTACT : 1038220 140 : euThrSerThrAlaPheMetLeuGlyProIleIleLeuProIleSerPheProPhe : 157 |||||:!!! ! !.!.:!:|||||| !:!::!!:!! !! ! !!|||||| ! euThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPheProThr 1038219 : TAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACC : 1038166 158 : AspAlaGluTyrProPheHisValAsnHisSerLeuValThrIleIleIleTyrIl : 176 :!!|||! !|||||||||! !|||||| !..!! !:!!! !! !||||||!:!!! AsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMe 1038165 : AACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTAT : 1038109 177 : eHisGlnSerLeuValGlyTyrGlnCysSerAlaAsnValCysAlaSerValPheG : 195 :|||||||||!!!|||||| ||||||:!!|||:!!!.! !! !!:!|||.!!. tHisGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuS 1038108 : GCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTT : 1038052 196 : lyAlaLeuLeuLeuTrpPheThrValAlaArgPheGluCysLeuIleValGluPhe : 213 .!|||||||||||| ||||||..!|||||||||||| |||:!:..!|||!!. erAlaLeuLeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeu 1038051 : CTGCACTGTTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTG : 1037998 214 : GlnLysCysThrAspIleAspMetValIleAlaCysValLysLysGlnValGlnLe : 232 ::!!!. !!.!||||||!!:! :!!||| ! !!:!!|||||| ! ! :! ArgAsnValAsnAspIleGluThrLeuIleLysSerMetLysLysTyrSerThrVa 1037997 : AGGAATGTCAATGATATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGT : 1037941 233 : uArg : 233 !||| lArg 1037940 : GCGG : 1037936 vulgar: AmOr155JOI 0 233 . KQ414618.1 1039184 1037935 - 411 M 94 282 S 0 1 5 0 2 I 0 546 3 0 2 S 1 2 M 138 414 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037936 1039184 411 - . gene_id 3 ; sequence AmOr155JOI ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1038902 1039184 . - . KQ414618.1 exonerate:protein2genome:local exon 1038902 1039184 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1038900 1038901 . - . intron_id 1 ; splice_site "AT" KQ414618.1 exonerate:protein2genome:local intron 1038352 1038901 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1038352 1038353 . - . intron_id 0 ; splice_site "TG" KQ414618.1 exonerate:protein2genome:local cds 1037936 1038351 . - . KQ414618.1 exonerate:protein2genome:local exon 1037936 1038351 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037936 1039184 411 - . alignment_id 3 ; Query AmOr155JOI ; Align 1039185 1 282 ; Align 1038350 96 414 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr155JOI Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 354 Query range: 0 -> 232 Target range: 1058517 -> 1057738 1 : MetLeuLysLysAlaThrProGluLysIleIleAspIleIleArgPheSerValAl : 19 ||| !|||!.. !|||||||||:!! |||....!!! !:!.!.|||||||| MetArgLysSerIleThrProGluGlnAlaIleSerPheThrLysLeuSerValAl 1058517 : ATGAGGAAAAGTATAACGCCGGAACAAGCGATCTCGTTCACGAAACTGAGCGTCGC : 1058463 20 : aIleCysPheCysTrpProTyrProLeuAsnSerSerArgAsnGlnIlePheGlyP : 38 |:!! !! !! |||||| !!! ! :!!!!!|||!.!|||:!!!!. !| aValThrCysSerTrpProProSerProLeuAlaThrArgThrGlnValLeuLeuP 1058462 : TGTAACTTGTTCGTGGCCACCGTCACCTCTGGCGACCAGAACTCAAGTTTTGCTCT : 1058406 39 : heLysValLeuGlnIleSerThrMetValSerAlaCysIleMetLeuLeuProLeu : 56 ||!!...!||| !! !!!!.!!.!.||||||.!! ! :!!|||||||||||| heAsnThrLeuTrpSerThrAlaPheValSerThrIleAlaLeuLeuLeuProLeu 1058405 : TTAATACGTTGTGGAGCACAGCATTCGTTAGCACCATCGCGCTGCTTTTGCCGCTA : 1058352 57 : LeuTyrSerIleTyrLeuHisAsnAspAspValIleHisIleSerLysCysIleCy : 75 ||| !.!!|||||| !:!!..! ! ||| !||| !:!!.!!||| :!! ! LeuSerGlyIleTyrGluTyrArgLysAspProIleIleLeuGlyLysThrValSe 1058351 : TTGAGCGGAATTTACGAGTACCGTAAAGACCCCATCATTCTTGGGAAAACAGTCAG : 1058295 76 : sIleSerIleGlyValThrGlnLeuIleValGlnThrLeuValCysPheIleLysH : 94 !:!!:!! !.!|||.!!|||:!! !:!!:!!! !:!!:!!||| !.!!:!!! rLeuAlaSerAlaValAlaGlnValAlaIleLysMetIleMetCysArgPheGlnG 1058294 : CCTCGCCTCGGCTGTCGCCCAGGTGGCAATCAAAATGATAATGTGCCGTTTCCAGC : 1058238 95 : isAsnSerLeuGln >>>> Target Intron 1 >>>> ArgValValGlyG : 103 !.!!...!!!!||| 83 bp !:!! ! !! lnLysGlnPheGln++ ++ValLeuTyrPheA 1058237 : AGAAGCAATTCCAGgt.........................agGTATTGTACTTCG : 1058128 104 : luMetMetLysCysValLysGluAlaGlnGlnAsnGluIleGluIlePheSerLys : 121 !:||| !!!.! ! !!:! ! ||| ......||| :::.!...!::! spMetGluAsnPheCysArgTyrAlaThrSerLysGluLysValValLeuGlnArg 1058127 : ACATGGAGAATTTCTGCAGATACGCCACCtcgaaggaaaaagttgtcCTGCAACGA : 1058074 122 : TyrIleGluLysCysLysIlePheTyrGlySerSerIleIlePheSerTyrLeuTh : 140 |||:!:!!:!:!! !||| !|||:!!|||! !! !|||:!!!::!!!!:!||||| TyrValAspArgTyrLysTyrPheHisGlyIleTyrIleLeuTrpCysPheLeuTh 1058073 : TACGTGGACAGATACAAATACTTTCATGGGATTTATATATTATGGTGCTTCCTCAC : 1058017 141 : rSerThrAlaPheMetLeuGlyProIleIleLeuProIleSerPheProPheAspA : 159 |!!!! ! ! !!!!: !||||||:!: !! !||| !!!|||||| ! !!| rThrIlePheValIleSerGlyProLeuTyrSerProGlnThrPheProThrHisA 1058016 : GACCATCTTCGTCATAAGTGGTCCATTGTACTCACCACAGACGTTCCCCACTCATG : 1057960 160 : laGluTyrProPheHisValAsnHisSerLeuValThrIleIleIleTyrIleHis : 177 || !|||||||||!!.|||.!.|||!!!||| !!! |||:::||||||...||| laIleTyrProPheGlnValGluHisThrLeuPheLysIleValIleTyrPheHis 1057959 : CGATATATCCTTTCCAAGTGGAACATACACTGTTCAagattgttatttatttccat : 1057906 178 : GlnSerLeuValGlyTyrGlnCysSerAlaAsnValCysAlaSerValPheGlyAl : 196 |||||||||||||||!:!|||...||||||..!:!!..! !..!..! !|| GlnSerLeuValGlyPheGlnAlaSerAlaGlyMetAlaIleAspThrGlnIleAl 1057905 : CAGTCGTTAGTTGGTTTTCAGGCGTCCGCTGGTATGGCCATCGACACTCAAATTGC : 1057849 197 : aLeuLeuLeuTrpPheThrValAlaArgPheGluCysLeuIleValGluPheGlnL : 215 |||||||||| ! !:!.!!!.!|||||||||||| ||| ! !|||.!.!:!! aLeuLeuLeuArgTyrAlaAlaAlaArgPheGluLeuLeuGlyAsnGluMetArgA 1057848 : TCTTCTTCTGCGATACGCGGCTGCCAGGTTCGAGCTATTGGGAAACGAGATGCGAA : 1057792 216 : ysCysThrAspIleAspMetValIleAlaCysValLysLysGlnValGlnLeu : 232 !....!.! ! ! ! !!! !||||||:!!:!!|||!!. !:!!||| snAlaAsnThrHisCysGluPheAsnAlaCysIleGluLysHisSerGluLeu 1057791 : ATGCAAATACTCACTGTGAATTCAATGCCTGCATAGAGAAGCACAGTGAACTT : 1057739 vulgar: AmOr155JOI 0 232 . KQ414618.1 1058517 1057738 - 354 M 98 294 5 0 2 I 0 79 3 0 2 M 134 402 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057739 1058517 354 - . gene_id 4 ; sequence AmOr155JOI ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1058224 1058517 . - . KQ414618.1 exonerate:protein2genome:local exon 1058224 1058517 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1058222 1058223 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1058141 1058223 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1058141 1058142 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1057739 1058140 . - . KQ414618.1 exonerate:protein2genome:local exon 1057739 1058140 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057739 1058517 354 - . alignment_id 4 ; Query AmOr155JOI ; Align 1058518 1 294 ; Align 1058141 99 402 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr152 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1006 Query range: 0 -> 370 Target range: 1053857 -> 1051862 1 : MetLeuLysGlnIleIleSerGluLysThrIleGlnIleIleTrpPheSerValAl : 19 ||||||||||||:!:! ! !!||||||..!|||.!.|||||||||||||||||||| MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : aIleThrPheCysTrpProIleSerLeuAsnSerSerLysThrGlnValPheIleP : 38 |:!:.!! !!|||||||||:!!||| !::!:!!||||||.!!|||||| | aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 39 : heLysIleLeuGlnIleIleSerIleIleAsnValPheMetLeuLeuLeuProLeu : 56 ||||||||||||||||| ||| |||!:!!.!.!!!!:||||||||||||||| heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 57 : LeuTyrSerValTyrLeuHisPheAsnAspIleIleIleValSerLysSerIleAl : 75 |||||||||..!||||||||||||:!!|||:!!|||:!!:!!|||:!!||||||.. LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 76 : aLeuSerValGlyLeuIleGlnValIleValGlnThrIleIleCysPheIleLysT : 94 !||||||:!!|||:!!.!!|||:!!|||:!!||||||:!!|||||||||! !!!.| sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCysPheThrAsnT 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGTTTCACCAACT : 1053578 95 : yrAspSerLeuGln >>>> Target Intron 1 >>>> HisValValGluG : 103 ||||| !|||||| 613 bp !..:!!:!! !| yrAspLeuLeuGln++ ++ArgIleIleThrG 1053577 : ACGACCTTCTGCAGgt.........................agCGAATAATTACAG : 1052938 104 : luMetIleIleTyrValLysGluAlaGlnGlnTyrGluLysLysIlePheHisLys : 121 ||||||||! |||||||||||||||||||||!:!|||!:!:!!|||.!!|||!!. luMetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLeuHisAsn 1052937 : AAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCACAAC : 1052884 122 : TyrIleGluLysCysHisIlePheTyrGlyCysSerIleAlaCysIleTyrLeuTh : 140 ||||||:!!|||||| ! :!!||||||||| !!|||:!! !!! ! !|||||| TyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrTyrLeuCy 1052883 : TATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACATACCTCTG : 1052827 141 : rAlaThrValPheValIleGlyProValPheSerSerAlaSerPheProAlaAspA : 159 !|||||| !||||||:!!||||||||| !! ! !! ! !!||||||::!..!| sAlaThrCysPheValLeuGlyProValValLeuProAsnProPheProSerSerA 1052826 : TGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGCAGTG : 1052770 160 : laGluTyrProPheGlnValAsnSerThrSerMetLysIleIleIleTyrLeuGln : 177 ||||||||||||||!::|||||| !!||| !!|||!!. !|||:!!||||||!!. laGluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyrLeuHis 1052769 : CAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTACCTGCAC : 1052716 178 : GlnSerLeuIleAlaPheGlnCysAlaGlyHisAlaCysLeuSerIlePheGlyAl : 196 ||||||!!!|||::!||||||! !::!!.!||| !|||:!!|||||||||||||| GlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePheGlyAl 1052715 : CAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTTCGGAGC : 1052659 197 : aLeuLeuLeuTrpPheValSerAlaArgPheGluCysLeuAlaValGluLeuGlnL : 215 |||||||||||||.!!..!:!!|||||||||.!.||||||.!!:!!|||:!!|||: aLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluValGlnG 1052658 : TCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTTCAAC : 1052602 216 : ysThrThrAspIleGlyMetLeuIleValCysValLysLysGlnLeuHisIleArg : 233 !!!:!:!!..!||| !|||||||||:!!||||||||||||||||||! :!:||| lnSerSerSerIleHisMetLeuIleIleCysValLysLysGlnLeuLeuLeuArg 1052601 : AAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCTACTACTGAGG : 1052548 234 : ArgTyrAlaArgArgValValIleSerPheArgPheIleIle-----LeuCysAla : 250 |||! !... ...||| !||||||:!!#####|||! !||| Arg******GluAspPheAlaIleTyrAspTyrPheIleVal#####LeuPheAla 1052547 : AGGTGATAAGaagattttgcaatttatgatTACTTTATCGTAACTGATTGTTTGCC : 1052492 251 : MetGlyValSerIlePheSerLeuThrLeuGlyGlyIleIleMetIleThrLysSe : 269 !!: ! !!!!! ! !!.! !..!:!!! !|||.!! :!:|||..! !: IleIlePheArgTyrAlaLysGluValValAspGlyPheArgLeuIleValLeuAs 1052491 : ATAATTTTTAGGTACGCCAAAGAAGTGGTTGACGGTTTTCGGCTTATAGTACTCAA : 1052435 270 : rProPheIleValLysValGlnPheIleThrLeuIleLeuThrLeuLeuThrGlu : 288 ! !!.!. !:!!!..:!! ! !:!!||||||! ! !! ! !|||! ! ! nAlaIleAlaMetSerIleLeuAlaLeuThrLeuSerSerIleThrLeuIleMet+ 1052434 : CGCTATAGCAATGAGCATTTTGGCTCTTACTCTAAGTAGTATTACATTAATAATGg : 1052378 289 : >>>> Target Intron 2 >>>> IleTyrMetTyrAlaTrpProAlaAspH : 297 122 bp |||||||||||||||||| !!||||||: + +-IleTyrMetTyrAlaTrpSerAlaAspT 1052377 : t.........................aaATTTATATGTACGCATGGTCAGCTGACT : 1052229 298 : isMetLysAspMet >>>> Target Intron 3 >>>> SerIleAsnValS : 306 !!|||||||||||| 80 bp ||| !!!.|||| yrMetLysAspMet++ ++SerAlaLysValS 1052228 : ACATGAAAGACATGgt.........................agAGTGCAAAGGTTT : 1052122 307 : erLysSerValTyrAsnThrIleTrpTyrGluGlnThrLeuArgMetGlnLysAsn : 324 ||:!!|||||||||:!! !! ||||||! !|||||||||...|||||||||||| erGlnSerValTyrAspLeuThrTrpTyrGlyGlnThrLeuGluMetGlnLysAsn 1052121 : CACAAAGTGTGTATGATTTAACGTGGTACGGACAAACATtggaaatgcagaaaaat : 1052068 325 : LeuLeuAsnIleLeuMetTyrGlnGlnProIleIleLeuSerIleAsnCysIleLe : 343 :::||| ||||||:!::!!|||:!!|||:!!|||||||||:!!!:!||||||:! ValLeuTyrIleLeuValHisGlnGluProValIleLeuSerValSerCysIleVa 1052067 : gtattatacatattgGTACACCAAGAACCGGTAATTCTGTCAGTTAGTTGCATCGT : 1052011 344 : uProGluLeuSerLeuArgTyrTyrCysSer >>>> Target Intron 4 >> : 354 !|||||||||||||||||||||||||||||| 65 bp lProGluLeuSerLeuArgTyrTyrCysSer++ 1052010 : GCCGGAGCTTTCTCTTCGTTATTATTGCTCGgt....................... : 1051976 355 : >> TyrLeuSerAsnAlaPheSerIlePheThrAlaIleArgValIleIleGlu : 370 |||||||||||||||||||||:!!|||||||||:!:||||||:!::!:!!: ++TyrLeuSerAsnAlaPheSerValPheThrAlaLeuArgValValLeuAsp 1051975 : ..agTACCTGTCAAATGCGTTCTCGGTTTTCACCGCTTTGCGCGTCGTGCTGGAT : 1051863 vulgar: AmOr152 0 370 . KQ414618.1 1053857 1051862 - 1006 M 98 294 5 0 2 I 0 609 3 0 2 M 149 447 F 0 5 M 40 120 5 0 2 I 0 118 3 0 2 M 14 42 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 61 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1051863 1053857 1006 - . gene_id 1 ; sequence AmOr152 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1053564 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053564 1053857 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1053562 1053563 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052951 1053563 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052951 1052952 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052379 1052950 . - . KQ414618.1 exonerate:protein2genome:local exon 1052379 1052950 . - . insertions 0 ; deletions 0 ; frameshifts 5 KQ414618.1 exonerate:protein2genome:local splice5 1052377 1052378 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052257 1052378 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1052257 1052258 . - . intron_id 1 ; splice_site "AA" KQ414618.1 exonerate:protein2genome:local cds 1052215 1052256 . - . KQ414618.1 exonerate:protein2genome:local exon 1052215 1052256 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052213 1052214 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052135 1052214 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1052135 1052136 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051979 1052134 . - . KQ414618.1 exonerate:protein2genome:local exon 1051979 1052134 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1051977 1051978 . - . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1051914 1051978 . - . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 1051914 1051915 . - . intron_id 3 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051863 1051913 . - . KQ414618.1 exonerate:protein2genome:local exon 1051863 1051913 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1051863 1053857 1006 - . alignment_id 1 ; Query AmOr152 ; Align 1053858 1 294 ; Align 1052951 99 447 ; Align 1052499 248 120 ; Align 1052257 288 42 ; Align 1052135 302 156 ; Align 1051914 354 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr152 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 196 Query range: 0 -> 98 Target range: 1039184 -> 1038890 1 : MetLeuLysGlnIleIleSerGluLysThrIleGlnIleIleTrpPheSerValAl : 19 ||||||||| ! ! ! !!|||!:!.!!|||...:!!:!! !!! !..!|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1039184 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1039130 20 : aIleThrPheCysTrpProIleSerLeuAsnSerSerLysThrGlnValPheIleP : 38 |.!!|||! !|||||||||:!! !!! !!..:!!!!!|||:!!! !|||.!! !| aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1039129 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1039073 39 : heLysIleLeuGlnIleIleSerIleIleAsnValPheMetLeuLeuLeuProLeu : 56 |||||||||||::! !.!! !:!!:!!|||!.!!!.:!!|||!!!||||||||| heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1039072 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1039019 57 : LeuTyrSerValTyrLeuHisPheAsnAspIleIleIleValSerLysSerIleAl : 75 ||||||:!!:!!:!!:!!||| |||||| ! ! !|||:!!|||:!! !.. LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1039018 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1038962 76 : aLeuSerValGlyLeuIleGlnValIleValGlnThrIleIleCysPheIleLysT : 94 !|||!!!:!!!.!|||:::|||:::... ||||||...:::|||.!! !:!!| sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1038961 : CCTGACGCTTGCTctcgtgcaaatatttttccaaactttcgttTGCATCGGTCAAT : 1038905 95 : yrAspSerLeuGln : 98 ||||| !!!!||| yrAspHisPheGln 1038904 : ACGATCATTTTCAG : 1038891 vulgar: AmOr152 0 98 . KQ414618.1 1039184 1038890 - 196 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1038891 1039184 196 - . gene_id 2 ; sequence AmOr152 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1038891 1039184 . - . KQ414618.1 exonerate:protein2genome:local exon 1038891 1039184 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1038891 1039184 196 - . alignment_id 2 ; Query AmOr152 ; Align 1039185 1 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr152 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 196 Query range: 0 -> 98 Target range: 1030017 -> 1029723 1 : MetLeuLysGlnIleIleSerGluLysThrIleGlnIleIleTrpPheSerValAl : 19 ||||||||| ! ! ! !!|||!:!.!!|||...:!!:!! !!! !..!|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1030017 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1029963 20 : aIleThrPheCysTrpProIleSerLeuAsnSerSerLysThrGlnValPheIleP : 38 |.!!|||! !|||||||||:!! !!! !!..:!!!!!|||:!!! !|||.!! !| aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1029962 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1029906 39 : heLysIleLeuGlnIleIleSerIleIleAsnValPheMetLeuLeuLeuProLeu : 56 |||||||||||::! !.!! !:!!:!!|||!.!!!.:!!|||!!!||||||||| heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1029905 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1029852 57 : LeuTyrSerValTyrLeuHisPheAsnAspIleIleIleValSerLysSerIleAl : 75 ||||||:!!:!!:!!:!!||| |||||| ! ! !|||:!!|||:!! !.. LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1029851 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1029795 76 : aLeuSerValGlyLeuIleGlnValIleValGlnThrIleIleCysPheIleLysT : 94 !|||!!!:!!!.!|||:::|||:::... ||||||.!!:!!|||.!! !:!!| sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1029794 : CCTGACGCTTGCCctcgtgcaaatatttttccagacTTTCGTTTGCATCGGCCAAT : 1029738 95 : yrAspSerLeuGln : 98 ||||| !!!!||| yrAspHisPheGln 1029737 : ACGATCATTTTCAG : 1029724 vulgar: AmOr152 0 98 . KQ414618.1 1030017 1029723 - 196 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1029724 1030017 196 - . gene_id 3 ; sequence AmOr152 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1029724 1030017 . - . KQ414618.1 exonerate:protein2genome:local exon 1029724 1030017 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1029724 1030017 196 - . alignment_id 3 ; Query AmOr152 ; Align 1030018 1 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr152 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 156 Query range: 0 -> 98 Target range: 1058517 -> 1058223 1 : MetLeuLysGlnIleIleSerGluLysThrIleGlnIleIleTrpPheSerValAl : 19 ||| !|||...|||! !!|||:!!.!!|||..!.!!! .!.|||||||| MetArgLysSerIleThrProGluGlnAlaIleSerPheThrLysLeuSerValAl 1058517 : ATGAGGAAAAGTATAACGCCGGAACAAGCGATCTCGTTCACGAAACTGAGCGTCGC : 1058463 20 : aIleThrPheCysTrpProIleSerLeuAsnSerSerLysThrGlnValPheIleP : 38 |:!!|||! !! |||||| |||! ! :!!!!!!:!|||||||||!!.:!!| aValThrCysSerTrpProProSerProLeuAlaThrArgThrGlnValLeuLeuP 1058462 : TGTAACTTGTTCGTGGCCACCGTCACCTCTGGCGACCAGAACTCAAGTTTTGCTCT : 1058406 39 : heLysIleLeuGlnIleIleSerIleIleAsnValPheMetLeuLeuLeuProLeu : 56 ||!!.! ||| !! !! !:!!.!!:!!!:!..!.!! !||||||||||||||| heAsnThrLeuTrpSerThrAlaPheValSerThrIleAlaLeuLeuLeuProLeu 1058405 : TTAATACGTTGTGGAGCACAGCATTCGTTAGCACCATCGCGCTGCTTTTGCCGCTA : 1058352 57 : LeuTyrSerValTyrLeuHisPheAsnAspIleIleIleValSerLysSerIleAl : 75 ||| !.!!:!!||| !:!! !!!.||| !||||||:!!.!!|||!!!:!!:: LeuSerGlyIleTyrGluTyrArgLysAspProIleIleLeuGlyLysThrValSe 1058351 : TTGAGCGGAATTTACGAGTACCGTAAAGACCCCATCATTCTTGGGAAAACAGTCAG : 1058295 76 : aLeuSerValGlyLeuIleGlnValIleValGlnThrIleIleCysPheIleLysT : 94 !|||:!! !!.!:!! !|||||| !:!!:!!! !|||!!:||| !.!!:!! rLeuAlaSerAlaValAlaGlnValAlaIleLysMetIleMetCysArgPheGlnG 1058294 : CCTCGCCTCGGCTGTCGCCCAGGTGGCAATCAAAATGATAATGTGCCGTTTCCAGC : 1058238 95 : yrAspSerLeuGln : 98 ! ! ..!!!!||| lnLysGlnPheGln 1058237 : AGAAGCAATTCCAG : 1058224 vulgar: AmOr152 0 98 . KQ414618.1 1058517 1058223 - 156 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1058224 1058517 156 - . gene_id 4 ; sequence AmOr152 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1058224 1058517 . - . KQ414618.1 exonerate:protein2genome:local exon 1058224 1058517 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1058224 1058517 156 - . alignment_id 4 ; Query AmOr152 ; Align 1058518 1 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr154 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 699 Query range: 0 -> 234 Target range: 1053857 -> 1052542 1 : MetLeuLysLysValThrProGluAsnValIleTyrIleIleArgLeuSerValAl : 19 |||||||||:!!:!!|||||||||!!.|||||| !!|||||| !!!!!|||||||| MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : aIleCysCysCysTrpProArgProPheAsnSerThrLysAsnGlnIlePheAlaP : 38 |:!:... !|||||||||! ! !! !::!:!!!:!||| !|||:!! |||| aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 39 : heLysValLeuGlnIleSerThrIleIleSerAlaPheMetValPheLeuProLeu : 56 |||||:::||||||||| ::! |||||||||.!!!!::!!.!!||||||||| heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 57 : LeuTyrSerIleTyrLeuHisAsnAspAsnIleIleHisValPheLysCysIleCy : 75 |||||||||! !||||||||| !|||:!!:!!||| !:!!! !:!! !!||||| LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 76 : sLeuSerIleGlyIleThrGlnLeuIleValGlnThrLeuIleCysPheIleLysH : 94 |||||||!!:|||:!! !|||:!!|||:!!||||||:!!|||||||||! !!!.: sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCysPheThrAsnT 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGTTTCACCAACT : 1053578 95 : isAsnSerLeuGln >>>> Target Intron 1 >>>> ArgValValGluG : 103 !!:!! !|||||| 613 bp |||:!!:!! !| yrAspLeuLeuGln++ ++ArgIleIleThrG 1053577 : ACGACCTTCTGCAGgt.........................agCGAATAATTACAG : 1052938 104 : luMetValAsnCysValLysGlnAlaGlnGlnSerGluIleGluIlePheTyrLys : 121 |||||:!!!..! !||||||:!!|||||||||! !|||! ||||||.!!:!!!!. luMetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLeuHisAsn 1052937 : AAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCACAAC : 1052884 122 : TyrIleGluLysCysLysIlePheTyrGlySerSerIleAlaPheSerTyrLeuAl : 140 ||||||:!!|||||||||:!!|||||||||.!!|||:!! !!::!!!||||||.. TyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrTyrLeuCy 1052883 : TATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACATACCTCTG : 1052827 141 : aAlaThrAlaPheMetLeuGlyProAlaIleLeuProIleSerPheProLeuGluA : 159 !||||||..!|||:!:|||||||||!.!:!!||||||! ! !!|||||| !...| sAlaThrCysPheValLeuGlyProValValLeuProAsnProPheProSerSerA 1052826 : TGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGCAGTG : 1052770 160 : laGluTyrProPheHisValAsnGluSerLeuIleThrIleIleIleTyrMetHis : 177 ||||||||||||||!.!||||||...!!!! !!!:!.! !|||:!!|||:!!||| laGluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyrLeuHis 1052769 : CAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTACCTGCAC : 1052716 178 : GlnSerLeuValSerTyrGlnCysSerAlaAsnValCysValSerIlePheGlyAl : 196 ||||||!!!:!!|||!:!|||! !||||||:!!:!!|||||||||||||||||||| GlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePheGlyAl 1052715 : CAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTTCGGAGC : 1052659 197 : aLeuLeuLeuTrpPheThrValAlaArgPheGluCysLeuIleGluGluPheGlnL : 215 |||||||||||||.!!|||!.!|||||||||.!.||||||! ! !||| !!|||: aLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluValGlnG 1052658 : TCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTTCAAC : 1052602 216 : ysCysSerAsnIleAspMetMetIleAlaCysIleLysLysGlnLeuGlnLeuLys : 233 !! !!|||!:!||| !!|||:!:||| !|||:!!||||||||||||! !|||!:! lnSerSerSerIleHisMetLeuIleIleCysValLysLysGlnLeuLeuLeuArg 1052601 : AAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCTACTACTGAGG : 1052548 234 : Arg : 234 ||| Arg 1052547 : AGG : 1052543 vulgar: AmOr154 0 234 . KQ414618.1 1053857 1052542 - 699 M 98 294 5 0 2 I 0 609 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1052543 1053857 699 - . gene_id 1 ; sequence AmOr154 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1053564 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053564 1053857 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1053562 1053563 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052951 1053563 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052951 1052952 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052543 1052950 . - . KQ414618.1 exonerate:protein2genome:local exon 1052543 1052950 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1052543 1053857 699 - . alignment_id 1 ; Query AmOr154 ; Align 1053858 1 294 ; Align 1052951 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr154 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 465 Query range: 0 -> 234 Target range: 1030017 -> 1028765 1 : MetLeuLysLysValThrProGluAsnValIleTyrIleIleArgLeuSerValAl : 19 ||||||||| ! !!:!||||||!..!.!|||! !:!!:!!!:!:!!! !..!|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1030017 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1029963 20 : aIleCysCysCysTrpProArgProPheAsnSerThrLysAsnGlnIlePheAlaP : 38 |.!! !||||||||||||! !|||! !..:!!||||||::!! !:!:.!! !| aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1029962 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1029906 39 : heLysValLeuGlnIleSerThrIleIleSerAlaPheMetValPheLeuProLeu : 56 |||||:!!|||::! !! ! !:!!:!!!:!|||!!.:!!:!!|||||||||||| heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1029905 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1029852 57 : LeuTyrSerIleTyrLeuHisAsnAspAsnIleIleHisValPheLysCysIleCy : 75 ||||||:!!:!::!!:!!|||...:!!:!! ! :!!||| |||..! !|| LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1029851 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1029795 76 : sLeuSerIleGlyIleThrGlnLeuIleValGlnThrLeuIleCysPheIleLysH : 94 ||||!!!:!!!.!:::...|||:::... ||||||!!!:!!|||.!! !:!!: sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1029794 : CCTGACGCTTGCCctcgtgcaaatatttttccagacTTTCGTTTGCATCGGCCAAT : 1029738 95 : isAsnSerLeuGln >>>> Target Intron 1 >>>> ArgValValGluG : 103 !!:!! !!!!||| 550 bp !:!:!!:!!|||| yrAspHisPheGln++ ++LysLeuIleGluG 1029737 : ACGATCATTTTCAGgt.........................agAAACTAATCGAAG : 1029161 104 : luMetValAsnCysValLysGlnAlaGlnGlnSerGluIleGluIlePheTyrLys : 121 ||||| !! !||| !:!! !|||:!!! !! !|||! !!!::!!||| ! ::! luMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheGlnArg 1029160 : AAATGAAGATTTGCTGTGAAACAGCGAAACCATACGAAAGAGACGTCTTTCAACGA : 1029107 122 : TyrIleGluLysCysLysIlePheTyrGlySerSerIleAlaPheSerTyrLeuAl : 140 |||:!!!!:|||! !...:!!||||||! !!!!!!! :!!!::! !||||||.! TyrValAspLysTyrSerLeuPheTyrValThrCysSerSerTrpPheTyrLeuTh 1029106 : TACGTCGATAAATACTCTTTATTTTACGTAACATGTTCGTCGTGGTTTTACTTAAC : 1029050 141 : aAlaThrAlaPheMetLeuGlyProAlaIleLeuProIleSerPheProLeuGluA : 159 !|||..! !.!.:!:|||||| ! !|||:!! !! ! !!|||||| !.!.| rAlaValIleMetValLeuGlySerArgIleIleSerAspProPheProThrAsnA 1029049 : AGCAGTTATTATGGTTCTGGGAAGTCGGATTATATCTGATCCTTTTCCAACCAACG : 1028993 160 : laGluTyrProPheHisValAsnGluSerLeuIleThrIleIleIleTyrMetHis : 177 ||! !|||||||||! !|||||| ..!! !:!:! !! !||||||!:!|||||| laValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHis 1028992 : CCGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGTATCATTTTTATGCAC : 1028939 178 : GlnSerLeuValSerTyrGlnCysSerAlaAsnValCysValSerIlePheGlyAl : 196 ||||||!!!|||.!! ||||||:!!|||:!!..! !!:!!!:!:!:.!. !|| GlnSerPheValGlyIleGlnCysAlaAlaHisThrSerMetAsnValLeuThrAl 1028938 : CAATCGTTCGTTGGCATACAGTGTGCTGCACACACTAGTATGAATGTGCTAACTGC : 1028882 197 : aLeuLeuLeuTrpPheThrValAlaArgPheGluCysLeuIleGluGluPheGlnL : 215 |||||||||| |||.!!!.!|||||||||||| |||!!: !|||.!.::!! aLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuMetMetGluLeuArgA 1028881 : ATTGTTATTACTATTTGCTGCAGCTCGTTTCGAGATACTGATGATGGAGCTGAGGA : 1028825 216 : ysCysSerAsnIleAspMetMetIleAlaCysIleLysLysGlnLeuGlnLeuLys : 233 !. !|||:!!|||!!:! :!!||| !|||!!:|||||| ! ! ! :!!::! snValSerAspIleGluThrLeuIleLysCysMetLysLysTyrSerIleValArg 1028824 : ATGTCAGTGACATTGAAACACTGATTAAATGTATGAAAAAGTATTCGATCGTACGG : 1028771 234 : Arg : 234 ||| Arg 1028770 : AGG : 1028766 vulgar: AmOr154 0 234 . KQ414618.1 1030017 1028765 - 465 M 98 294 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028766 1030017 465 - . gene_id 2 ; sequence AmOr154 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1029724 1030017 . - . KQ414618.1 exonerate:protein2genome:local exon 1029724 1030017 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1029722 1029723 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1029174 1029723 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1029174 1029175 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028766 1029173 . - . KQ414618.1 exonerate:protein2genome:local exon 1028766 1029173 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028766 1030017 465 - . alignment_id 2 ; Query AmOr154 ; Align 1030018 1 294 ; Align 1029174 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr154 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 425 Query range: 0 -> 234 Target range: 1039184 -> 1037932 1 : MetLeuLysLysValThrProGluAsnValIleTyrIleIleArgLeuSerValAl : 19 ||||||||| ! !!:!||||||!..!.!|||! !:!!:!!!:!:!!! !..!|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1039184 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1039130 20 : aIleCysCysCysTrpProArgProPheAsnSerThrLysAsnGlnIlePheAlaP : 38 |.!! !||||||||||||! !|||! !..:!!||||||::!! !:!:.!! !| aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1039129 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1039073 39 : heLysValLeuGlnIleSerThrIleIleSerAlaPheMetValPheLeuProLeu : 56 |||||:!!|||::! !! ! !:!!:!!!:!|||!!.:!!:!!|||||||||||| heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1039072 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1039019 57 : LeuTyrSerIleTyrLeuHisAsnAspAsnIleIleHisValPheLysCysIleCy : 75 ||||||:!!:!::!!:!!|||...:!!:!! ! :!!||| |||..! !|| LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1039018 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1038962 76 : sLeuSerIleGlyIleThrGlnLeuIleValGlnThrLeuIleCysPheIleLysH : 94 ||||!!!:!!!.!:::...|||:::... ||||||...:::|||.!! !:!!: sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1038961 : CCTGACGCTTGCTctcgtgcaaatatttttccaaactttcgttTGCATCGGTCAAT : 1038905 95 : is{A} >>>> Target Intron 1 >>>> {sn}SerLeuGlnArgValVal : 101 !!{:} 550 bp {!!}!!!||||||!:!:!!:!! yr{A}-+ -+{sp}ThrLeuGlnLysLeuIle 1038904 : AC{G}at.........................tg{AC}ACGTTGCAGAAACTAATC : 1038334 102 : GluGluMetValAsnCysValLysGlnAlaGlnGlnSerGluIleGluIlePheTy : 120 ||||||||| !! !||| !:!! !|||:!!! !! !|||! !!!::!!||| ! GluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheGl 1038333 : GAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGACGTCTTCCA : 1038277 121 : rLysTyrIleGluLysCysLysIlePheTyrGlySerSerIleAlaPheSerTyrL : 139 ::!|||:!!.!.||| ...:::|||||| ::: !! :!!!::! !|||| nArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheTyrL 1038276 : ACGATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTTACT : 1038220 140 : euAlaAlaThrAlaPheMetLeuGlyProAlaIleLeuProIleSerPheProLeu : 157 ||.!!|||! ! !.!.:!:|||||| ! !:!!:!! !! ! !!|||||| ! euThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPheProThr 1038219 : TAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACC : 1038166 158 : GluAlaGluTyrProPheHisValAsnGluSerLeuIleThrIleIleIleTyrMe : 176 .!.|||! !|||||||||! !|||||| ..!! !:!:! !! !||||||!:!|| AsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMe 1038165 : AACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTAT : 1038109 177 : tHisGlnSerLeuValSerTyrGlnCysSerAlaAsnValCysValSerIlePheG : 195 ||||||||||!!!|||.!! ||||||:!!|||:!!!.! !!:!!!:!:!:.!!. tHisGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuS 1038108 : GCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTT : 1038052 196 : lyAlaLeuLeuLeuTrpPheThrValAlaArgPheGluCysLeuIleGluGluPhe : 213 .!|||||||||||| ||||||..!|||||||||||| |||:!: !|||!!. erAlaLeuLeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeu 1038051 : CTGCACTGTTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTG : 1037998 214 : GlnLysCysSerAsnIleAspMetMetIleAlaCysIleLysLysGlnLeuGlnLe : 232 ::!!!. !!:!:!!|||!!:! :!!||| ! !!!!:|||||| ! ! ! :! ArgAsnValAsnAspIleGluThrLeuIleLysSerMetLysLysTyrSerThrVa 1037997 : AGGAATGTCAATGATATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGT : 1037941 233 : uLysArg : 234 !::!||| lArgArg 1037940 : GCGGAGG : 1037933 vulgar: AmOr154 0 234 . KQ414618.1 1039184 1037932 - 425 M 94 282 S 0 1 5 0 2 I 0 546 3 0 2 S 1 2 M 139 417 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037933 1039184 425 - . gene_id 3 ; sequence AmOr154 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1038902 1039184 . - . KQ414618.1 exonerate:protein2genome:local exon 1038902 1039184 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1038900 1038901 . - . intron_id 1 ; splice_site "AT" KQ414618.1 exonerate:protein2genome:local intron 1038352 1038901 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1038352 1038353 . - . intron_id 0 ; splice_site "TG" KQ414618.1 exonerate:protein2genome:local cds 1037933 1038351 . - . KQ414618.1 exonerate:protein2genome:local exon 1037933 1038351 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037933 1039184 425 - . alignment_id 3 ; Query AmOr154 ; Align 1039185 1 282 ; Align 1038350 96 417 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr154 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 364 Query range: 266 -> 374 Target range: 1052319 -> 1051850 267 : MetAsnIleProLeuIleValLysIleGlnPheValIleIleCysIleThrIleMe : 285 ..!.!.||||||||||||||||||:!:|||||||||! !:!! !!.!!|||:!!:! GlnGluIleProLeuIleValLysValGlnPheValThrValSerPheThrValLe 1052319 : CAGGAAATACCGTTAATTGTGAAAGTGCAATTCGTAACTGTAAGCTTCACTGTACT : 1052265 286 : tThrGluValTyrMetTyrAlaTrpProAlaAspTyrValLysAsnMet >>>> : 302 :.!!|||:!!||||||||||||||| !!|||||||||:!!|||:!!||| uAlaGluIleTyrMetTyrAlaTrpSerAlaAspTyrMetLysAspMet++ 1052264 : CGCAGAAATTTATATGTACGCATGGTCAGCTGACTACATGAAAGACATGgt..... : 1052212 303 : Target Intron 1 >>>> SerIleAsnIleSerArgSerValTyrGluLeuS : 313 80 bp ||| !!!.:!!|||!:!|||||||||!!:|||! ++SerAlaLysValSerGlnSerValTyrAspLeuT 1052211 : ....................agAGTGCAAAGGTTTCACAAAGTGTGTATGATTTAA : 1052101 314 : erTrpTyrGluGlnThrIleGluMetGlnLysAsnPheLeuAsnValLeuValTyr : 331 !!||||||! !||||||:::||||||||||||||| ||| :::||||||:!! hrTrpTyrGlyGlnThrLeuGluMetGlnLysAsnValLeuTyrIleLeuValHis 1052100 : CGTGGTACGGACAAACATtggaaatgcagaaaaatgtattatacatattgGTACAC : 1052047 332 : GlnLysProValIlePheSerIleSerCysIleValProGluLeuSerLeuArgTy : 350 |||:!!|||||||||.!.|||:!!|||||||||||||||||||||||||||||||| GlnGluProValIleLeuSerValSerCysIleValProGluLeuSerLeuArgTy 1052046 : CAAGAACCGGTAATTCTGTCAGTTAGTTGCATCGTGCCGGAGCTTTCTCTTCGTTA : 1051990 351 : rTyrCysSer >>>> Target Intron 2 >>>> TyrLeuSerAsnValPh : 359 |||||||||| 65 bp ||||||||||||!.!|| rTyrCysSer++ ++TyrLeuSerAsnAlaPh 1051989 : TTATTGCTCGgt.........................agTACCTGTCAAATGCGTT : 1051898 360 : eSerIlePheThrThrLeuArgValLeuLeuGluAspThrSerAla : 374 ||||:!!||||||.!!|||||||||:!!|||!!:! ! !|||||| eSerValPheThrAlaLeuArgValValLeuAspAlaLysSerAla 1051897 : CTCGGTTTTCACCGCTTTGCGCGTCGTGCTGGATGCAAAATCAGCC : 1051851 vulgar: AmOr154 266 374 . KQ414618.1 1052319 1051850 - 364 M 35 105 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 61 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1051851 1052319 364 - . gene_id 4 ; sequence AmOr154 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1052215 1052319 . - . KQ414618.1 exonerate:protein2genome:local exon 1052215 1052319 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052213 1052214 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052135 1052214 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052135 1052136 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051979 1052134 . - . KQ414618.1 exonerate:protein2genome:local exon 1051979 1052134 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1051977 1051978 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1051914 1051978 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1051914 1051915 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051851 1051913 . - . KQ414618.1 exonerate:protein2genome:local exon 1051851 1051913 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1051851 1052319 364 - . alignment_id 4 ; Query AmOr154 ; Align 1052320 267 105 ; Align 1052135 302 156 ; Align 1051914 354 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr154 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 357 Query range: 0 -> 234 Target range: 1058517 -> 1057732 1 : MetLeuLysLysValThrProGluAsnValIleTyrIleIleArgLeuSerValAl : 19 ||| !|||!..:!!|||||||||.!.!.!|||! .!!! !:!||||||||||| MetArgLysSerIleThrProGluGlnAlaIleSerPheThrLysLeuSerValAl 1058517 : ATGAGGAAAAGTATAACGCCGGAACAAGCGATCTCGTTCACGAAACTGAGCGTCGC : 1058463 20 : aIleCysCysCysTrpProArgProPheAsnSerThrLysAsnGlnIlePheAlaP : 38 |:!! !|||! ||||||! ! !! ! :!!|||!:!!.!|||:!!!!. !| aValThrCysSerTrpProProSerProLeuAlaThrArgThrGlnValLeuLeuP 1058462 : TGTAACTTGTTCGTGGCCACCGTCACCTCTGGCGACCAGAACTCAAGTTTTGCTCT : 1058406 39 : heLysValLeuGlnIleSerThrIleIleSerAlaPheMetValPheLeuProLeu : 56 ||!!...!||| !! !!!!.!!.!!:!!|||.!!.!! !:!!.!!||||||||| heAsnThrLeuTrpSerThrAlaPheValSerThrIleAlaLeuLeuLeuProLeu 1058405 : TTAATACGTTGTGGAGCACAGCATTCGTTAGCACCATCGCGCTGCTTTTGCCGCTA : 1058352 57 : LeuTyrSerIleTyrLeuHisAsnAspAsnIleIleHisValPheLysCysIleCy : 75 ||| !.!!|||||| !:!!..! ! :!! !||| !:!! ||| :!! ! LeuSerGlyIleTyrGluTyrArgLysAspProIleIleLeuGlyLysThrValSe 1058351 : TTGAGCGGAATTTACGAGTACCGTAAAGACCCCATCATTCTTGGGAAAACAGTCAG : 1058295 76 : sLeuSerIleGlyIleThrGlnLeuIleValGlnThrLeuIleCysPheIleLysH : 94 !|||:!! !.!:!!.!!|||:!! !:!!:!!! !:!!!!:||| !.!!:!!! rLeuAlaSerAlaValAlaGlnValAlaIleLysMetIleMetCysArgPheGlnG 1058294 : CCTCGCCTCGGCTGTCGCCCAGGTGGCAATCAAAATGATAATGTGCCGTTTCCAGC : 1058238 95 : isAsnSerLeuGln >>>> Target Intron 1 >>>> ArgValValGluG : 103 !.!!...!!!!||| 83 bp !:!! ! ! lnLysGlnPheGln++ ++ValLeuTyrPheA 1058237 : AGAAGCAATTCCAGgt.........................agGTATTGTACTTCG : 1058128 104 : luMetValAsnCysValLysGlnAlaGlnGlnSerGluIleGluIlePheTyrLys : 121 !:|||! !|||! ! !!:! ! ||| ......||| :::.!. ! ::! spMetGluAsnPheCysArgTyrAlaThrSerLysGluLysValValLeuGlnArg 1058127 : ACATGGAGAATTTCTGCAGATACGCCACCtcgaaggaaaaagttgtcCTGCAACGA : 1058074 122 : TyrIleGluLysCysLysIlePheTyrGlySerSerIleAlaPheSerTyrLeuAl : 140 |||:!:!!:!:!! !||| !|||:!!|||! !! !||| !!::!!!!:!|||.! TyrValAspArgTyrLysTyrPheHisGlyIleTyrIleLeuTrpCysPheLeuTh 1058073 : TACGTGGACAGATACAAATACTTTCATGGGATTTATATATTATGGTGCTTCCTCAC : 1058017 141 : aAlaThrAlaPheMetLeuGlyProAlaIleLeuProIleSerPheProLeuGluA : 159 !.!!! ! ! !!!!: !|||||| ! !! !||| !!!|||||| !.!.| rThrIlePheValIleSerGlyProLeuTyrSerProGlnThrPheProThrHisA 1058016 : GACCATCTTCGTCATAAGTGGTCCATTGTACTCACCACAGACGTTCCCCACTCATG : 1057960 160 : laGluTyrProPheHisValAsnGluSerLeuIleThrIleIleIleTyrMetHis : 177 || !|||||||||!!.|||.!..!.!!!|||.!!! |||:::||||||...||| laIleTyrProPheGlnValGluHisThrLeuPheLysIleValIleTyrPheHis 1057959 : CGATATATCCTTTCCAAGTGGAACATACACTGTTCAagattgttatttatttccat : 1057906 178 : GlnSerLeuValSerTyrGlnCysSerAlaAsnValCysValSerIlePheGlyAl : 196 ||||||||||||.!!!:!|||...||||||..!:!!..!:!!..!! ! !|| GlnSerLeuValGlyPheGlnAlaSerAlaGlyMetAlaIleAspThrGlnIleAl 1057905 : CAGTCGTTAGTTGGTTTTCAGGCGTCCGCTGGTATGGCCATCGACACTCAAATTGC : 1057849 197 : aLeuLeuLeuTrpPheThrValAlaArgPheGluCysLeuIleGluGluPheGlnL : 215 |||||||||| ! !:!.!!!.!|||||||||||| ||| !.!.|||.!.!:!! aLeuLeuLeuArgTyrAlaAlaAlaArgPheGluLeuLeuGlyAsnGluMetArgA 1057848 : TCTTCTTCTGCGATACGCGGCTGCCAGGTTCGAGCTATTGGGAAACGAGATGCGAA : 1057792 216 : ysCysSerAsnIleAspMetMetIleAlaCysIleLysLysGlnLeuGlnLeuLys : 233 !....!:!!.! ! ! .!.! !|||||||||:!!|||!!. !:!!||| snAlaAsnThrHisCysGluPheAsnAlaCysIleGluLysHisSerGluLeuLeu 1057791 : ATGCAAATACTCACTGTGAATTCAATGCCTGCATAGAGAAGCACAGTGAACTTCTC : 1057738 234 : Arg : 234 ||| Arg 1057737 : AGg : 1057733 vulgar: AmOr154 0 234 . KQ414618.1 1058517 1057732 - 357 M 98 294 5 0 2 I 0 79 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057733 1058517 357 - . gene_id 5 ; sequence AmOr154 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1058224 1058517 . - . KQ414618.1 exonerate:protein2genome:local exon 1058224 1058517 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1058222 1058223 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1058141 1058223 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1058141 1058142 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1057733 1058140 . - . KQ414618.1 exonerate:protein2genome:local exon 1057733 1058140 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057733 1058517 357 - . alignment_id 5 ; Query AmOr154 ; Align 1058518 1 294 ; Align 1058141 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr154 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 144 Query range: 267 -> 370 Target range: 1056077 -> 1055702 268 : AsnIleProLeuIleValLysIleGlnPheValIleIleCysIleThrIleMetTh : 286 ||| !||||||:!!:!!||| ! !!:!!.!:!!:!! .!!!:! !! .. AsnGlnProLeuLeuLeuLysAlaLeuTyrAlaValValValPheSerAlaSerVa 1056077 : AATCAACCATTGCTTTTGAAAGCTTTATACGCGGTCGTAGTATTCAGCGCCAGCGT : 1056023 287 : rGluValTyrMetTyrAlaTrpProAlaAspTyrValLysAsnMet >>>> Tar : 302 !|||:!!!:!||||||||||||||||||||| !!:!!! !..!||| lGluLeuPheMetTyrAlaTrpProAlaAspAsnLeuMetArgMet++ 1056022 : GGAGCTCTTCATGTACGCTTGGCCTGCGGATAATTTGATGCGTATGgt........ : 1055973 303 : get Intron 1 >>>> SerIleAsnIleSerArgSerValTyrGluLeuSerT : 314 63 bp |||! !!.:!!:!! !..!:!!|||.!. !..!| ++SerThrLysLeuAlaAlaAspIleTyrAsnThrAspT 1055972 : .................agAGTACGAAGCTTGCGGCAGATATTTACAACACAGATT : 1055876 315 : rpTyrGluGlnThrIleGluMetGlnLysAsnPheLeuAsnValLeuVal<->Tyr : 331 ||!:!|||:!! !|||..!:!!||||||!!. ! ! ! !!:!!:!! ! ! ! rpPheGluLysAspIleArgLeuGlnLysLysValTyrTyrIleIleGlnArgSer 1055875 : GGTTCGAAAAGGATATTAGATTGCAAAAAAAGGTATACTATATTATACAAAGGTCT : 1055822 332 : GlnLysProValIlePheSerIleSerCysIleValProGluLeuSerLeuArgTy : 350 |||!:!! !! ! !.!! !!|||!:! !!|||||||||:!!|||||||||! !|| GlnArgLeuGluAlaIleArgIleAsnGlyIleValProLysLeuSerLeuProTy 1055821 : CAGAGGCTCGAAGCTATTCGAATTAATGGCATAGTTCCAAAACTATCCCTGCCATA : 1055765 351 : rTyrCysSerTyrLeuSerAsnValPheSerIlePheThrThrLeuArgValLeuL : 369 ||||...! ! !!!!!.! !! !!:!!:!!||| ! !:!! ! !|||| rTyrAlaMetValGlyThrThrPheValAlaLeuPheLeuLeuIleSerGlnLeuL 1055764 : CTATGCAATGGTAGGTACTACTTTTGTTGCACTTTTTCTTCTAATCTCACAATTAT : 1055708 370 : euGlu : 370 ||!!: euAsp 1055707 : TAGAC : 1055703 vulgar: AmOr154 267 370 . KQ414618.1 1056077 1055702 - 144 M 34 102 5 0 2 I 0 59 3 0 2 M 29 87 G 0 3 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1055703 1056077 144 - . gene_id 6 ; sequence AmOr154 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1055976 1056077 . - . KQ414618.1 exonerate:protein2genome:local exon 1055976 1056077 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1055974 1055975 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1055913 1055975 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1055913 1055914 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1055703 1055912 . - . KQ414618.1 exonerate:protein2genome:local exon 1055703 1055912 . - . insertions 3 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1055703 1056077 144 - . alignment_id 6 ; Query AmOr154 ; Align 1056078 268 102 ; Align 1055913 302 87 ; Align 1055823 331 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr156 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 910 Query range: 0 -> 373 Target range: 1053857 -> 1051853 1 : MetIleGluGlnValMetLeuLysArgValIleTyrIleThrTrpLeuSerValAl : 19 |||:!::!!|||:!!! ! !:!!!:!|||||| !!|||! !|||!!!|||||||| MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : aLeuCysPheCysTrpProValSerAlaAsnThrSerArgAsnGlnIleIleValP : 38 ||||... !!|||||||||:!!|||::!::!.!!|||!:! !|||:!!:::...| aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 39 : heArgPhePheGlnIlePheThrIleIleSerSerCysLeuGlySerLeuProMet : 56 ||:::......|||||| ::! ||||||:!! !:!! ! !||||||:!! heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 57 : PheHisSerIleTyrLeuHisGlnAspAspIleValIleValAlaLysSerIleSe : 75 !!.:!!|||! !||||||||| ||||||:!!:!!:!!:!!:!!:!!||||||!! LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 76 : rIleMetValValLeuIleGlnLeuIleValGlnThrThrIleCysAlaIleLysH : 94 !:!: !:!!! !:!!.!!|||:!!|||:!!||||||..!|||||| !! !!!.: sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCysPheThrAsnT 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGTTTCACCAACT : 1053578 95 : isAspThrLeuGln >>>> Target Intron 1 >>>> HisIleIleGluG : 103 !!||| !|||||| 613 bp !..|||||| !| yrAspLeuLeuGln++ ++ArgIleIleThrG 1053577 : ACGACCTTCTGCAGgt.........................agCGAATAATTACAG : 1052938 104 : luMetIleThrTyrMetLysGluAlaLysGlnTyrGluLysLysIleIleGlnLys : 121 ||||||||||||||:!:|||||||||:!!|||!:!|||!:!:!!|||:!!!!.!!. luMetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLeuHisAsn 1052937 : AAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCACAAC : 1052884 122 : TyrValSerLysCysTyrIleLeuTyrGlySerAlaIleIleIleSerTyrLeuTh : 140 |||:!!..!|||||| ! :!!!!!||||||.!!:!!:!!||| !!!|||||| TyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrTyrLeuCy 1052883 : TATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACATACCTCTG : 1052827 141 : rThrThrIlePheIleLeuGlyProIlePheLeuProIleSerLeuProPheTyrT : 159 !.!!||| !|||:!!|||||||||:!! !!||||||! ! !!!!!||| ! !. sAlaThrCysPheValLeuGlyProValValLeuProAsnProPheProSerSerA 1052826 : TGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGCAGTG : 1052770 160 : hrGluPheProLeuSerLeuAsnAsnThrAlaValTyrIleIleIleTyrPheHis : 177 !!|||!:!|||!!! !!:!!|||..!||| !!:!! !! !|||:!!|||.!.||| laGluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyrLeuHis 1052769 : CAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTACCTGCAC : 1052716 178 : GlnCysPhePheAlaTyrGlnCysSerAlaThrValCysLeuSerIlePheGlyAl : 196 |||! !|||.!.::!!:!|||! !|||||| !:!!|||:!!|||||||||||||| GlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePheGlyAl 1052715 : CAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTTCGGAGC : 1052659 197 : aLeuLeuLeuTrpPheValValIleLysPheGluCysLeuIleMetLysIleGlnA : 215 |||||||||||||.!!..!!.! !:!|||.!.||||||! !:!!:!!:!!|||. aLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluValGlnG 1052658 : TCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTTCAAC : 1052602 216 : snIleSerAsnLysAspMetMetValIleCysIleLysLysGlnLeuGlnIleArg : 233 !.! !|||!:!! !!|||:!::!!||||||:!!||||||||||||! !:!:||| lnSerSerSerIleHisMetLeuIleIleCysValLysLysGlnLeuLeuLeuArg 1052601 : AAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCTACTACTGAGG : 1052548 234 : {Ar} >>>> Target Intron 2 >>>> {g}TyrAlaLysGluIleAlaAs : 241 {||} 65 bp {|}||||||||||||:!:!.!:! {Ar}++ ++{g}TyrAlaLysGluValValAs 1052547 : {AG}gt.........................ag{G}TACGCCAAAGAAGTGGTTGA : 1052459 242 : nCysPheArgHisIleIlePheTyrThrIleIleAlaThrSerPheAsnMetIleL : 260 ! !!||||||! !|||:!!.!! !!.!!||| ! !!:!! !!!. !:!:! !| pGlyPheArgLeuIleValLeuAsnAlaIleAlaMetSerIleLeuAlaLeuThrL 1052458 : CGGTTTTCGGCTTATAGTACTCAACGCTATAGCAATGAGCATTTTGGCTCTTACTC : 1052402 261 : euAlaGlyIleIleLeuIleMet >>>> Target Intron 3 >>>> AsnP : 269 ||::!.!!|||! !||||||||| 62 bp .!. euSerSerIleThrLeuIleMet++ ++GluI 1052401 : TAAGTAGTATTACATTAATAATGgt.........................agGAAA : 1052313 270 : roLeuLeuValIleLysIleGlnPheMetIleThrCysPheThrAlaLeuIleGlu : 287 !! !|||:!!:!:|||:!:||||||:!:! !..! !!||||||!.!||| !||| leProLeuIleValLysValGlnPheValThrValSerPheThrValLeuAlaGlu 1052312 : TACCGTTAATTGTGAAAGTGCAATTCGTAACTGTAAGCTTCACTGTACTCGCAGAA : 1052259 288 : ValTyrLeuTyrAlaTrpProAlaGlnTyrMetAspAspMet >>>> Target : 302 :!!|||:!!||||||||| !!|||.!.|||||| ! |||||| 80 IleTyrMetTyrAlaTrpSerAlaAspTyrMetLysAspMet++ 1052258 : ATTTATATGTACGCATGGTCAGCTGACTACATGAAAGACATGgt............ : 1052212 303 : Intron 4 >>>> SerLysAsnValSerIleSerAlaTyrAsnLeuLysTrpTy : 315 bp ||| !!!.|||||| !|||!.!|||:!!|||! !||||| ++SerAlaLysValSerGlnSerValTyrAspLeuThrTrpTy 1052211 : .............agAGTGCAAAGGTTTCACAAAGTGTGTATGATTTAACGTGGTA : 1052095 316 : rGluGlnThrSerGluMetGlnGlnAsnIleLeuIleMetLeuIlePheGlnLysP : 334 |! !||||||! |||||||||:::|||:::||| :::|||:!! !|||:!!| rGlyGlnThrLeuGluMetGlnLysAsnValLeuTyrIleLeuValHisGlnGluP 1052094 : CGGACAAACATtggaaatgcagaaaaatgtattatacatattgGTACACCAAGAAC : 1052038 335 : roIleSerLeuSerIleAsnPheLeuMetProLysLeuSerLeuArgSerTyrCys : 352 ||:!!! !||||||:!!!:!! !:!!:!!|||:!!||||||||||||! !|||||| roValIleLeuSerValSerCysIleValProGluLeuSerLeuArgTyrTyrCys 1052037 : CGGTAATTCTGTCAGTTAGTTGCATCGTGCCGGAGCTTTCTCTTCGTTATTATTGC : 1051984 353 : Ala >>>> Target Intron 5 >>>> TyrLeuSerAsnAlaPheSerIle : 361 :!! 65 bp |||||||||||||||||||||:!! Ser++ ++TyrLeuSerAsnAlaPheSerVal 1051983 : TCGgt.........................agTACCTGTCAAATGCGTTCTCGGTT : 1051892 362 : PheThrAlaLeuArgValIleLeuLysAspAsnSer : 373 ||||||||||||||||||:!:||| ! ! !!.||| PheThrAlaLeuArgValValLeuAspAlaLysSer 1051891 : TTCACCGCTTTGCGCGTCGTGCTGGATGCAAAATCA : 1051854 vulgar: AmOr156 0 373 . KQ414618.1 1053857 1051853 - 910 M 98 294 5 0 2 I 0 609 3 0 2 M 135 405 S 0 2 5 0 2 I 0 61 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 34 102 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 61 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1051854 1053857 910 - . gene_id 1 ; sequence AmOr156 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1053564 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053564 1053857 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1053562 1053563 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052951 1053563 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052951 1052952 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052544 1052950 . - . KQ414618.1 exonerate:protein2genome:local exon 1052544 1052950 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052542 1052543 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052479 1052543 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1052479 1052480 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052379 1052478 . - . KQ414618.1 exonerate:protein2genome:local exon 1052379 1052478 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052377 1052378 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052317 1052378 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1052317 1052318 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052215 1052316 . - . KQ414618.1 exonerate:protein2genome:local exon 1052215 1052316 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052213 1052214 . - . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052135 1052214 . - . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 1052135 1052136 . - . intron_id 3 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051979 1052134 . - . KQ414618.1 exonerate:protein2genome:local exon 1051979 1052134 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1051977 1051978 . - . intron_id 5 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1051914 1051978 . - . intron_id 5 KQ414618.1 exonerate:protein2genome:local splice3 1051914 1051915 . - . intron_id 4 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051854 1051913 . - . KQ414618.1 exonerate:protein2genome:local exon 1051854 1051913 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1051854 1053857 910 - . alignment_id 1 ; Query AmOr156 ; Align 1053858 1 294 ; Align 1052951 99 405 ; Align 1052478 235 99 ; Align 1052317 268 102 ; Align 1052135 302 156 ; Align 1051914 354 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr156 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 205 Query range: 67 -> 234 Target range: 1058233 -> 1057732 68 : ValIleValAlaLysSerIleSerIleMetValValLeuIleGlnLeuIleValGl : 86 !.!||| !!.!||||||! ! !||| !:!!! ! !.!!! ||| ::: AlaIleProGlyLysSerThrValIleSerIleGluThrPheLeuLeuAsnIleLe 1058233 : GCAATTCCAGGTAAGTCGACCGTGATTTCGATAGAAACATTTCtgttaaacatttt : 1058179 87 : nThrThrIleCysAlaIleLysHisAspThrLeuGlnHisIleIleGluGluMetI : 105 :!:! !!:!:|||:!!:!!.!!! !||| :!: ! !!:||| uIleGluLeuSerProValLysAsnAsnAlaSerGlnValLeuTyrPheAspMetG 1058178 : aattgaacTGTCACCGGTGAAAAACAATGCTTCGCAGGTATTGTACTTCGACATGG : 1058122 106 : leThrTyrMetLysGluAlaLysGlnTyrGluLysLysIleIleGlnLysTyrVal : 123 !.!!:! !:! ! |||! ... |||||| ::::!:|||::!|||||| luAsnPheCysArgTyrAlaThrSerLysGluLysValValLeuGlnArgTyrVal 1058121 : AGAATTTCTGCAGATACGCCACCtcgaaggaaaaagttgtcCTGCAACGATACGTG : 1058068 124 : SerLysCysTyrIleLeuTyrGlySerAlaIleIleIleSerTyrLeuThrThrTh : 142 ..!!:!! ! ! !!!!:!!|||! ! !|||:!! !!!!:!|||||||||! AspArgTyrLysTyrPheHisGlyIleTyrIleLeuTrpCysPheLeuThrThrIl 1058067 : GACAGATACAAATACTTTCATGGGATTTATATATTATGGTGCTTCCTCACGACCAT : 1058011 143 : rIlePheIleLeuGlyProIlePheLeuProIleSerLeuProPheTyrThrGluP : 161 !.!! !!||| !||||||:!:!:!! !||| !!!!!!||| !:!!.!! !! ePheValIleSerGlyProLeuTyrSerProGlnThrPheProThrHisAlaIleT 1058010 : CTTCGTCATAAGTGGTCCATTGTACTCACCACAGACGTTCCCCACTCATGCGATAT : 1057954 162 : heProLeuSerLeuAsnAsnThrAlaValTyrIleIleIleTyrPheHisGlnCys : 179 :!|||!!!..!:!!.!.:!!||| ! !! |||:::|||||||||||||||! yrProPheGlnValGluHisThrLeuPheLysIleValIleTyrPheHisGlnSer 1057953 : ATCCTTTCCAAGTGGAACATACACTGTTCAagattgttatttatttccatCAGTCG : 1057900 180 : PhePheAlaTyrGlnCysSerAlaThrValCysLeuSerIlePheGlyAlaLeuLe : 198 !!. !!!.!!:!|||...|||||| !:!!..!:!!..!! ! !|||||||| LeuValGlyPheGlnAlaSerAlaGlyMetAlaIleAspThrGlnIleAlaLeuLe 1057899 : TTAGTTGGTTTTCAGGCGTCCGCTGGTATGGCCATCGACACTCAAATTGCTCTTCT : 1057843 199 : uLeuTrpPheValValIleLysPheGluCysLeuIleMetLysIleGlnAsnIleS : 217 |||| ! !:!!.!!.! !!:!|||||| ||| !! :!!!!:!:!||| !! uLeuArgTyrAlaAlaAlaArgPheGluLeuLeuGlyAsnGluMetArgAsnAlaA 1057842 : TCTGCGATACGCGGCTGCCAGGTTCGAGCTATTGGGAAACGAGATGCGAAATGCAA : 1057786 218 : erAsnLysAspMetMetValIleCysIleLysLysGlnLeuGlnIleArgArg : 234 :!!.! ! ! .!. ! !||||||:!!|||!!. !:!!:!!! !||| snThrHisCysGluPheAsnAlaCysIleGluLysHisSerGluLeuLeuArg 1057785 : ATACTCACTGTGAATTCAATGCCTGCATAGAGAAGCACAGTGAACTTCTCAGg : 1057733 vulgar: AmOr156 67 234 . KQ414618.1 1058233 1057732 - 205 M 167 501 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057733 1058233 205 - . gene_id 2 ; sequence AmOr156 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1057733 1058233 . - . KQ414618.1 exonerate:protein2genome:local exon 1057733 1058233 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057733 1058233 205 - . alignment_id 2 ; Query AmOr156 ; Align 1058234 68 501 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr156 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 152 Query range: 267 -> 373 Target range: 1056077 -> 1054211 268 : AsnProLeuLeuValIleLysIleGlnPheMetIleThrCysPheThrAlaLeuIl : 286 |||! !! !|||:!!:!:||| ! !!:! !:!!..! |||!:!||| !:! AsnGlnProLeuLeuLeuLysAlaLeuTyrAlaValValValPheSerAlaSerVa 1056077 : AATCAACCATTGCTTTTGAAAGCTTTATACGCGGTCGTAGTATTCAGCGCCAGCGT : 1056023 287 : eGluValTyrLeuTyrAlaTrpProAlaGlnTyrMetAspAspMet >>>> Tar : 302 :|||:!!!:!:!!|||||||||||||||.!. !!:!! !||| lGluLeuPheMetTyrAlaTrpProAlaAspAsnLeuMetArgMet++ 1056022 : GGAGCTCTTCATGTACGCTTGGCCTGCGGATAATTTGATGCGTATGgt........ : 1055973 303 : get Intron 1 >>>> SerLysAsnValSerIleSerAlaTyrAsnLeuLysT : 314 63 bp |||! !!!.:!!:!! !..! !|||||| ! ! | ++SerThrLysLeuAlaAlaAspIleTyrAsnThrAspT 1055972 : .................agAGTACGAAGCTTGCGGCAGATATTTACAACACAGATT : 1055876 315 : rpTyrGluGlnThrSerGluMetGlnGlnAsnIle<->LeuIleMetLeuIlePhe : 331 ||!:!|||:!! !! !..!:!!|||:!!!!.:!! ! !|||!!:! !! ! ! rpPheGluLysAspIleArgLeuGlnLysLysValTyrTyrIleIleGlnArgSer 1055875 : GGTTCGAAAAGGATATTAGATTGCAAAAAAAGGTATACTATATTATACAAAGGTCT : 1055822 332 : GlnLysProIleSerLeuSerIleAsnPheLeuMetProLysLeuSerLeuArgSe : 350 |||!:!! ! !:!!:!! !!|||||| !:!!:!:|||||||||||||||! !! GlnArgLeuGluAlaIleArgIleAsnGlyIleValProLysLeuSerLeuProTy 1055821 : CAGAGGCTCGAAGCTATTCGAATTAATGGCATAGTTCCAAAACTATCCCTGCCATA : 1055765 351 : rTyrCysAla >>>> Target Intron 2 >>>> TyrLeuSerAsnAlaPh : 359 !|||... ! 1482 bp ||||||! !!!.:!!!! rTyrAlaMet++ ++TyrLeuTyrLysSerLe 1055764 : CTATGCAATGgt.........................agTATCTATACAAGTCTTT : 1054256 360 : eSerIlePheThrAlaLeuArgValIleLeuLysAspAsnSer : 373 .||| !|||||||||||||||:!!!!::!!:!!..!.!.!!! uSerTyrPheThrAlaLeuArgIleMetValGluSerGluThr 1054255 : ATCTTACTTCACTGCGTTGCGTATCATGGTCGAAAGCGAAACT : 1054212 vulgar: AmOr156 267 373 . KQ414618.1 1056077 1054211 - 152 M 34 102 5 0 2 I 0 59 3 0 2 M 24 72 G 0 3 M 28 84 5 0 2 I 0 1478 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1054212 1056077 152 - . gene_id 3 ; sequence AmOr156 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1055976 1056077 . - . KQ414618.1 exonerate:protein2genome:local exon 1055976 1056077 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1055974 1055975 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1055913 1055975 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1055913 1055914 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1055754 1055912 . - . KQ414618.1 exonerate:protein2genome:local exon 1055754 1055912 . - . insertions 3 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1055752 1055753 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1054272 1055753 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1054272 1054273 . - . intron_id 1 ; splice_site "aG" KQ414618.1 exonerate:protein2genome:local cds 1054212 1054271 . - . KQ414618.1 exonerate:protein2genome:local exon 1054212 1054271 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1054212 1056077 152 - . alignment_id 3 ; Query AmOr156 ; Align 1056078 268 102 ; Align 1055913 302 72 ; Align 1055838 326 84 ; Align 1054272 354 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr158FIX Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 953 Query range: 0 -> 368 Target range: 1053857 -> 1051862 1 : MetLeuLysGlnIleThrProGluLysSerIleTyrIleIleTrpLeuSerValAl : 19 ||||||||||||:!:|||||||||||| !||| !!|||||||||!!!|||||||| MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : aLeuSerPheCysTrpProLeuHisIleAsnSerThrArgLysGlnIleMetTyrI : 38 ||||:!! !!|||||||||||| !! !::!:!!!:!!:! |||:!!::: . aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 39 : leLysIleLeuGlnIleSerAlaValValAsnAlaPheMetValLeuLeuProLeu : 56 ..||||||||||||||| ::!!.!:!!!:!|||.!!!!::!!|||||||||||| heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 57 : IleTyrThrIleHisLeuAsnMetHisAsnLeuIleAsnLeuPheGlnCysIleCy : 75 :!:|||:!!! !:!!|||:!!.!. !!:!!:!!||| !|||! !||| !!||||| LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 76 : sLeuLeuIleCysIlePheLysHisIleIleGlnThrValIleCysPheIleLysT : 94 ||||! !!!: !!:!!|||:!! |||!!:||||||||||||||||||! !!!.| sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCysPheThrAsnT 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGTTTCACCAACT : 1053578 95 : yrAsnAlaLeuGln >>>> Target Intron 1 >>>> ArgValValGluG : 103 ||:!! !|||||| 613 bp |||:!!:!! !| yrAspLeuLeuGln++ ++ArgIleIleThrG 1053577 : ACGACCTTCTGCAGgt.........................agCGAATAATTACAG : 1052938 104 : luMetMetIleCysValLysGluGluGlnLeuTyr<-><->AspIleLeuCysMet : 119 |||||!!:! ! !|||||||||! !|||! !!:! !!:|||||| !! luMetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLeuHisAsn 1052937 : AAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCACAAC : 1052884 120 : TyrValLysLysCysAsnIlePheTyrGlyGlyThrIleValLeuIleTyrGlyTh : 138 |||:!!:!!||||||!!.:!!||||||||||||:!!:!!:!!! !! !||| ! TyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrTyrLeuCy 1052883 : TATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACATACCTCTG : 1052827 139 : rAlaThrValPheValLeuGlyProIlePheLeuProIleSerPheProTrpGlyT : 157 !|||||| !|||||||||||||||:!! !!||||||! ! !!|||||| ! .!!. sAlaThrCysPheValLeuGlyProValValLeuProAsnProPheProSerSerA 1052826 : TGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGCAGTG : 1052770 158 : hrGluTyrProPheGlnValAsnTyrThrThrIleAsnValIleIleTyrAlaHis : 175 !!||||||||||||!::|||||| !||| !!!!:|||!.!|||:!!||| !||| laGluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyrLeuHis 1052769 : CAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTACCTGCAC : 1052716 176 : GlnPhePheLeuValTyrGlnCysAlaAlaHisThrCysLeuSerLeuPheGlyAl : 194 |||! !|||:!! !!:!|||! !::!||||||! !|||:!!|||:!!|||||||| GlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePheGlyAl 1052715 : CAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTTCGGAGC : 1052659 195 : aLeuLeuLeuTrpPheAlaThrAlaArgPheGluCysLeuIleLysGluLeuGlnL : 213 |||||||||||||.!!.!!.!!|||||||||.!.||||||! ! !|||:!!|||: aLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluValGlnG 1052658 : TCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTTCAAC : 1052602 214 : ysIleThrSerIleAspMetLeuIleValCysLeuLysLysLeuLeuPheLeuArg : 231 !!! !:!!|||||| !!|||||||||:!!|||:!!||||||! !|||.!.|||||| lnSerSerSerIleHisMetLeuIleIleCysValLysLysGlnLeuLeuLeuArg 1052601 : AAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCTACTACTGAGG : 1052548 232 : {Ar} >>>> Target Intron 2 >>>> {g}TyrAlaGluGluValValSe : 239 {||} 65 bp {|}||||||:!!|||||||||.. {Ar}++ ++{g}TyrAlaLysGluValValAs 1052547 : {AG}gt.........................ag{G}TACGCCAAAGAAGTGGTTGA : 1052459 240 : rSerIleArgPheLeuValPheTyrAlaIleThrIleSerThrPheThrLeuThrL : 258 !.!!.!!|||.!!:!!|||.!! !!||||||.!!!!:|||! !!!..!!||||||| pGlyPheArgLeuIleValLeuAsnAlaIleAlaMetSerIleLeuAlaLeuThrL 1052458 : CGGTTTTCGGCTTATAGTACTCAACGCTATAGCAATGAGCATTTTGGCTCTTACTC : 1052402 259 : euSerGlyIleIleMetIleIle >>>> Target Intron 3 >>>> AsnC : 267 |||||.!!|||! !:!:|||!!: 62 bp .!. euSerSerIleThrLeuIleMet++ ++GluI 1052401 : TAAGTAGTATTACATTAATAATGgt.........................agGAAA : 1052313 268 : ysProLeuPheValLysMetGluPheIleThrIleSerIleSerLeuLeuValGln : 285 ||||||.!!||||||:!!:!!|||:!!|||:!!|||.!!!!!:!!|||!.!:!! leProLeuIleValLysValGlnPheValThrValSerPheThrValLeuAlaGlu 1052312 : TACCGTTAATTGTGAAAGTGCAATTCGTAACTGTAAGCTTCACTGTACTCGCAGAA : 1052259 286 : IleTyrIleTyrAlaTrpProAlaAspTyrMetGlnAspMet >>>> Target : 300 ||||||!!:||||||||| !!||||||||||||:!!|||||| 80 IleTyrMetTyrAlaTrpSerAlaAspTyrMetLysAspMet++ 1052258 : ATTTATATGTACGCATGGTCAGCTGACTACATGAAAGACATGgt............ : 1052212 301 : Intron 4 >>>> SerIleAsnValLeuArgSerAlaTyrAsnSerIleTrpTy : 313 bp ||| !!!.|||! !!:!|||!.!|||:!!! !! ||||| ++SerAlaLysValSerGlnSerValTyrAspLeuThrTrpTy 1052211 : .............agAGTGCAAAGGTTTCACAAAGTGTGTATGATTTAACGTGGTA : 1052095 314 : rGluGlnThrLeuAspMetGlnLysThrLeuLeuIleMetMetAlaTyrGlnLysP : 332 |! !|||||||||:::|||||||||...:::||| ::::::!.!:!!|||:!!| rGlyGlnThrLeuGluMetGlnLysAsnValLeuTyrIleLeuValHisGlnGluP 1052094 : CGGACAAACATtggaaatgcagaaaaatgtattatacatattgGTACACCAAGAAC : 1052038 333 : roValThrPheSerIleAsnValLeuLeuProGluLeuThrLeuArgTyrCysCys : 350 |||||! !.!.|||:!!!:! !:!!:!!|||||||||:!!|||||||||! !||| roValIleLeuSerValSerCysIleValProGluLeuSerLeuArgTyrTyrCys 1052037 : CGGTAATTCTGTCAGTTAGTTGCATCGTGCCGGAGCTTTCTCTTCGTTATTATTGC : 1051984 351 : Ser >>>> Target Intron 5 >>>> TyrValSerAsnAlaLeuSerIle : 359 ||| 65 bp |||:!!|||||||||!!!|||:!! Ser++ ++TyrLeuSerAsnAlaPheSerVal 1051983 : TCGgt.........................agTACCTGTCAAATGCGTTCTCGGTT : 1051892 360 : PheThrAlaLeuArgAlaValValGlu : 368 |||||||||||||||!.!|||:!!!!: PheThrAlaLeuArgValValLeuAsp 1051891 : TTCACCGCTTTGCGCGTCGTGCTGGAT : 1051863 vulgar: AmOr158FIX 0 368 . KQ414618.1 1053857 1051862 - 953 M 98 294 5 0 2 I 0 609 3 0 2 M 16 48 G 0 6 M 117 351 S 0 2 5 0 2 I 0 61 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 34 102 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 61 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1051863 1053857 953 - . gene_id 1 ; sequence AmOr158FIX ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1053564 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053564 1053857 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1053562 1053563 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052951 1053563 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052951 1052952 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052544 1052950 . - . KQ414618.1 exonerate:protein2genome:local exon 1052544 1052950 . - . insertions 6 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052542 1052543 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052479 1052543 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1052479 1052480 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052379 1052478 . - . KQ414618.1 exonerate:protein2genome:local exon 1052379 1052478 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052377 1052378 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052317 1052378 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1052317 1052318 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052215 1052316 . - . KQ414618.1 exonerate:protein2genome:local exon 1052215 1052316 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052213 1052214 . - . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052135 1052214 . - . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 1052135 1052136 . - . intron_id 3 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051979 1052134 . - . KQ414618.1 exonerate:protein2genome:local exon 1051979 1052134 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1051977 1051978 . - . intron_id 5 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1051914 1051978 . - . intron_id 5 KQ414618.1 exonerate:protein2genome:local splice3 1051914 1051915 . - . intron_id 4 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051863 1051913 . - . KQ414618.1 exonerate:protein2genome:local exon 1051863 1051913 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1051863 1053857 953 - . alignment_id 1 ; Query AmOr158FIX ; Align 1053858 1 294 ; Align 1052951 99 48 ; Align 1052897 115 351 ; Align 1052478 233 99 ; Align 1052317 266 102 ; Align 1052135 300 156 ; Align 1051914 352 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr158FIX Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 286 Query range: 94 -> 264 Target range: 1038352 -> 1036103 95 : AsnAlaLeuGlnArgValValGluGluMetMetIleCysValLysGluGluGlnLe : 113 :!!.!!||||||!:!:!!:!!|||||||||! !|||||| !:!! !! !:!!! AspThrLeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysPr 1038352 : GACACGTTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACC : 1038298 114 : uTyr<-><->AspIleLeuCysMetTyrValLysLysCysAsnIlePheTyrGlyG : 130 !||| |||:!!!!! ||||||!!.||| ::::::|||||| oTyrGluArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleT 1038297 : ATACGAAAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataa : 1038241 131 : lyThrIleValLeuIleTyrGlyThrAlaThrValPheValLeuGlyProIlePhe : 148 ! !! !.!!||| !||||||! !:!!.!.||||||||| !:!:.!! hrCysSerSerTrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeu 1038240 : catGTTCGTCATGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTT : 1038187 149 : LeuProIleSerPheProTrpGlyThrGluTyrProPheGlnValAsnTyrThrTh : 167 :!! !! ! !!|||||| ..!.!!! !|||||||||! ||||||!:! ! ! IleSerAspProPheProThrAsnAlaValTyrProPheProValAsnPheGluPr 1038186 : ATATCCGATCCTTTTCCAACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACC : 1038130 168 : rIleAsnValIleIleTyrAlaHisGlnPhePheLeuValTyrGlnCysAlaAlaH : 186 !:!:!.. !||||||!:! !||||||! |||:!!! ! ||||||||||||| oLeuArgSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaH 1038129 : CTTGAGAAGCATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCAC : 1038073 187 : isThrCysLeuSerLeuPheGlyAlaLeuLeuLeuTrpPheAlaThrAlaArgPhe : 204 ||.!! !!:!!!:!:!!.!!..!|||||||||||| |||.!!|||||||||||| isAlaSerMetAsnValLeuSerAlaLeuLeuLeuLeuPheThrThrAlaArgPhe 1038072 : ACGCTAGTATGAATGTGCTTTCTGCACTGTTATTGCTATTCACTACAGCtcgtttc : 1038019 205 : GluCysLeuIleLysGluLeuGlnLysIleThrSerIleAspMetLeuIleValCy : 223 ||| |||:!:! !||||||::!!!.:!!!.!..!|||!!:! |||||| ! ! GluIleLeuMetThrGluLeuArgAsnValAsnAspIleGluThrLeuIleLysSe 1038018 : gaaatattgaTGACGGAGTTGAGGAATGTCAATGATATCGAAACACTGATTAAGAG : 1037962 224 : sLeuLysLysLeuLeuPheLeuArg{Ar} >>>> Target Intron 1 >>>> : 232 !:!!||||||! !! ! !:!!|||{||} 1733 bp rMetLysLysTyrSerThrValArg{Ar}++ 1037961 : TATGAAAAAGTATTCGACTGTGCGG{AG}gt......................... : 1037931 233 : {g}TyrAlaGluGluValValSerSerIleArgPheLeuValPheTyrAlaIle : 249 {|}|||||| !!!:||||||!!!!!!|||||||||||||||.!. !.!!:!! ++{g}TyrAlaThrAspValValThrThrIleArgPheLeuValLeuSerThrVal 1037930 : ag{G}TACGCAACGGACGTGGTTACCACAATTCGATTTCTGGTTCTGAGTACGGTA : 1036151 250 : ThrIleSerThrPheThrLeuThrLeuSerGlyIleIleMetIle : 264 ! !! !!!!||| ! .!!! !..!!!!:!!||||||! !:!!||| IleThrCysThrValAlaCysValPheAlaGlyIleAsnLeuIle 1036150 : ATCACATGCACTGTGGCGTGTGTATTTGCTGGAATTAATTTGATC : 1036104 vulgar: AmOr158FIX 94 264 . KQ414618.1 1038352 1036103 - 286 M 20 60 G 0 6 M 117 351 S 0 2 5 0 2 I 0 1729 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1036104 1038352 286 - . gene_id 2 ; sequence AmOr158FIX ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1037934 1038352 . - . KQ414618.1 exonerate:protein2genome:local exon 1037934 1038352 . - . insertions 6 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1037932 1037933 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1036201 1037933 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1036201 1036202 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1036104 1036200 . - . KQ414618.1 exonerate:protein2genome:local exon 1036104 1036200 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1036104 1038352 286 - . alignment_id 2 ; Query AmOr158FIX ; Align 1038353 95 60 ; Align 1038287 115 351 ; Align 1036200 233 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr158FIX Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 264 Query range: 94 -> 232 Target range: 1029185 -> 1028765 95 : AsnAlaLeuGlnArgValValGluGluMetMetIleCysValLysGluGluGlnLe : 113 :!!.!!||||||!:!:!!:!!|||||||||! !|||||| !:!! !! !:!!! AspThrLeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysPr 1029185 : GACACGTTGCAGAAACTAATCGAAGAAATGAAGATTTGCTGTGAAACAGCGAAACC : 1029131 114 : uTyr<-><->AspIleLeuCysMetTyrValLysLysCysAsnIlePheTyrGlyG : 130 !||| |||:!!!!! |||||| ! |||! !::!:!!||||||! ! oTyrGluArgAspValPheGlnArgTyrValAspLysTyrSerLeuPheTyrValT 1029130 : ATACGAAAGAGACGTCTTTCAACGATACGTCGATAAATACTCTTTATTTTACGTAA : 1029074 131 : lyThrIleValLeuIleTyrGlyThrAlaThrValPheValLeuGlyProIlePhe : 148 ! ! !! !.!!||| !||||||..!:!!.!.||||||||| ! .!! hrCysSerSerTrpPheTyrLeuThrAlaValIleMetValLeuGlySerArgIle 1029073 : CATGTTCGTCGTGGTTTTACTTAACAGCAGTTATTATGGTTCTGGGAAGTCGGATT : 1029020 149 : LeuProIleSerPheProTrpGlyThrGluTyrProPheGlnValAsnTyrThrTh : 167 :!! !! ! !!|||||| ..!.!!! !|||||||||! ||||||!:! ! ! IleSerAspProPheProThrAsnAlaValTyrProPheProValAsnPheGluPr 1029019 : ATATCTGATCCTTTTCCAACCAACGCCGTATATCCATTCCCTGTTAACTTTGAACC : 1028963 168 : rIleAsnValIleIleTyrAlaHisGlnPhePheLeuValTyrGlnCysAlaAlaH : 186 !:!:!.. !||||||!:! !||||||! |||:!!! ! ||||||||||||| oLeuArgSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaH 1028962 : CTTGAGAAGTATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCAC : 1028906 187 : isThrCysLeuSerLeuPheGlyAlaLeuLeuLeuTrpPheAlaThrAlaArgPhe : 204 ||||| !!:!!!:!:!!.!. !|||||||||||| ||||||.!!||||||||| isThrSerMetAsnValLeuThrAlaLeuLeuLeuLeuPheAlaAlaAlaArgPhe 1028905 : ACACTAGTATGAATGTGCTAACTGCATTGTTATTACTATTTGCTGCAGCTCGTTTC : 1028852 205 : GluCysLeuIleLysGluLeuGlnLysIleThrSerIleAspMetLeuIleValCy : 223 ||| |||!!:! !||||||::!!!.:!!!:!..!|||!!:! |||||| !|| GluIleLeuMetMetGluLeuArgAsnValSerAspIleGluThrLeuIleLysCy 1028851 : GAGATACTGATGATGGAGCTGAGGAATGTCAGTGACATTGAAACACTGATTAAATG : 1028795 224 : sLeuLysLysLeuLeuPheLeuArgArg : 232 |:!!||||||! !! !.!!:!!|||||| sMetLysLysTyrSerIleValArgArg 1028794 : TATGAAAAAGTATTCGATCGTACGGAGG : 1028766 vulgar: AmOr158FIX 94 232 . KQ414618.1 1029185 1028765 - 264 M 20 60 G 0 6 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028766 1029185 264 - . gene_id 3 ; sequence AmOr158FIX ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028766 1029185 . - . KQ414618.1 exonerate:protein2genome:local exon 1028766 1029185 . - . insertions 6 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028766 1029185 264 - . alignment_id 3 ; Query AmOr158FIX ; Align 1029186 95 60 ; Align 1029120 115 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr158FIX Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 231 -> 301 Target range: 1056255 -> 1055969 232 : ArgTyrAlaGluGluValValSerSerIleArgPheLeuValPheTyrAlaIleTh : 250 ||||||.!!:!! !:!! !..!||||||!:!||||||:!!!!. !.!!|||.! ArgTyrThrLysThrIleArgGlnSerIleLysPheLeuIleLeuThrThrIleAl 1056255 : AGGTATACGAAAACAATTCGACAATCTATCAAGTTCCTAATTTTGACCACTATTGC : 1056201 251 : rIleSerThrPheThrLeuThrLeuSerGlyIleIleMetIleIle >>>> Tar : 266 !! !!!!||| ! .!!:!!! !!!!.!!.!!:!:! !:!:||| ! aThrThrThrValAlaValIlePheGlySerLeuAsnLeuIleAla++ 1056200 : GACTACTACCGTGGCCGTAATTTTTGGTAGCTTGAATTTAATCGCTgt........ : 1056151 267 : get Intron 1 >>>> AsnCysProLeuPheValLysMetGluPheIleThrI : 278 76 bp ||| ||||||.!!:!!||| !!:! ..!: ++AsnGlnProLeuLeuLeuLysAlaLeuTyrAlaValV 1056150 : .................agAATCAACCATTGCTTTTGAAAGCTTTATACGCGGTCG : 1056041 279 : leSerIleSerLeuLeuValGlnIleTyrIleTyrAlaTrpProAlaAspTyrMet : 296 !! !.!!||| ! !|||:!!:!!!:!!!:|||||||||||||||||| !!:!! alValPheSerAlaSerValGluLeuPheMetTyrAlaTrpProAlaAspAsnLeu 1056040 : TAGTATTCAGCGCCAGCGTGGAGCTCTTCATGTACGCTTGGCCTGCGGATAATTTG : 1055987 297 : GlnAspMetSerIle : 301 ..! !||| !||| MetArgMetValIle 1055986 : ATGCGTATGGTAATT : 1055970 vulgar: AmOr158FIX 231 301 . KQ414618.1 1056255 1055969 - 105 M 34 102 5 0 2 I 0 72 3 0 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1055970 1056255 105 - . gene_id 4 ; sequence AmOr158FIX ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1056154 1056255 . - . KQ414618.1 exonerate:protein2genome:local exon 1056154 1056255 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1056152 1056153 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1056078 1056153 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1056078 1056079 . - . intron_id 0 ; splice_site "ag" KQ414618.1 exonerate:protein2genome:local cds 1055970 1056077 . - . KQ414618.1 exonerate:protein2genome:local exon 1055970 1056077 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1055970 1056255 105 - . alignment_id 4 ; Query AmOr158FIX ; Align 1056256 232 102 ; Align 1056078 266 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr153PSE Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 304 Query range: 0 -> 209 Target range: 1053857 -> 1052569 1 : MetValLysGluMetIleProGluLysThrIleHisIleThrTrpLeuSerValAl : 19 |||:!!|||:!!:!!! !|||||||||..!||| !!|||! !|||!!!|||||||| MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : aLeu<-><->CysTrpProLeuSerValAsnSerGlyLysThrGlnValPheIleP : 36 |||| ||||||||||||||| !::!:!!.!!|||.!!|||||| | aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 37 : heLysMetLeuGlnIleIleSerIleValSerAlaCysMetLeuLeuLeuLeuSer : 54 |||||:::||||||||| ||| :!!|||||| !!!:|||||||||! ! ! heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 55 : SerTyrSerIleTyrPheUnkHisGlyGlnCysArgIlePhe<->LysAsnTyrHi : 72 ! !||||||! !|||!!. !! !.!. !! !:!!.!! :!!!:! ! LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 73 : sArgPheIleAspValAlaGlnAsnIleIleGlnThrValIleCysPheTyr{Il} : 90 ! !! !!:! !||| !|||! |||!!:|||||||||||||||||| !{! } sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCysPheThr{Ly} 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGTTTCACC{AA} : 1053581 91 : >>>> Target Intron 1 >>>> {e}IleLysGluMetLysIleCysIle : 98 634 bp {!}|||! !||||||! ! ! !:!! -+ +-{s}IleThrGluMetIleThrTyrVal 1053580 : ct.........................at{A}ATTACAGAAATGATCACGTACGTC : 1052923 99 : LysGluThrGlnGluTyrGluIleGluIlePheGlnLysTyrIleAlaLysPheLy : 117 ||||||.!!|||:!!!:!|||! ||||||.!!!!.!!.|||||| !|||! !|| LysGluAlaGlnGlnPheGluArgGluIleLeuHisAsnTyrIleGlnLysCysLy 1052922 : AAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCACAACTATATCCAAAAATGCAA : 1052866 118 : sThrValTrpGlyCysAsnIleThrCysMetTyrLeuThrAlaLeuAlaPheThrI : 136 | ! !!!::||| !!::::!!! !!! ! |||||| !||| !..!|||..!: sLeuPheTyrGlyGlySerLeuIleTrpThrTyrLeuCysAlaThrCysPheValL 1052865 : ACTTTTTTACGGTGGTTCGTTAATTTGGACATACCTCTGTGCAACTTGTTTCGTAT : 1052809 137 : leGlySerValPheIleSerThrSerLeuSerCysAspAlaGluTyrProPheGln : 154 !!||| !!||| !!:!! !!!.! !!!!! !! !!..!|||||||||||||||!:: euGlyProValValLeuProAsnProPheProSerSerAlaGluTyrProPheArg 1052808 : TAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGCAGTGCAGAGTATCCGTTTCGC : 1052755 155 : LeuAsnTyrThrLeuValPheAlaIleArgTyr<-><->GlnSerPheLeuSerTy : 171 :!!||| !|||! !:!! !|||||| !||| |||||||||:!!|||!: ValAsnArgThrProMetAsnAlaIleValTyrLeuHisGlnSerPheIleSerPh 1052754 : GTTAATCGTACACCCATGAATGCTATTGTCTACCTGCACCAATCTTTCATAAGCTT : 1052698 172 : rGln<->CysAlaTyrAlaCysAlaAsp<-><-><->HisUnkLeuLeuTrpPheT : 186 !||| !!|||:!! !|||!.!..! ! |||||||||.!!| eGlnTyrSerAlaHisIleCysValSerIlePheGlyAlaLeuLeuLeuTrpIleT 1052697 : TCAGTACAGTGCACACATATGTGTAAGCATTTTCGGAGCTCTTTTACTCTGGATTA : 1052641 187 : hrAlaProArgPheGluCysLeuCysValGluLeuGlnAsnValThrAsnIleAsn : 204 ||||| !!||||||.!.|||||| !:!!|||:!!|||.!. !:!!!:!|||:!! hrAlaAlaArgPheHisCysLeuThrLeuGluValGlnGlnSerSerSerIleHis 1052640 : CGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTTCAACAAAGTTCAAGTATTCAT : 1052587 205 : MetLeuIleValCys : 209 |||||||||:!!||| MetLeuIleIleCys 1052586 : ATGTTAATCATCTGT : 1052570 vulgar: AmOr153PSE 0 209 . KQ414618.1 1053857 1052569 - 304 M 20 60 G 0 6 M 48 144 G 0 3 M 21 63 S 0 2 5 0 2 I 0 630 3 0 2 S 1 1 M 75 225 G 0 6 M 7 21 G 0 3 M 7 21 G 0 9 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1052570 1053857 304 - . gene_id 1 ; sequence AmOr153PSE ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1053580 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053580 1053857 . - . insertions 9 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1053578 1053579 . - . intron_id 1 ; splice_site "CT" KQ414618.1 exonerate:protein2genome:local intron 1052946 1053579 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052946 1052947 . - . intron_id 0 ; splice_site "AT" KQ414618.1 exonerate:protein2genome:local cds 1052570 1052945 . - . KQ414618.1 exonerate:protein2genome:local exon 1052570 1052945 . - . insertions 18 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1052570 1053857 304 - . alignment_id 1 ; Query AmOr153PSE ; Align 1053858 1 60 ; Align 1053792 21 144 ; Align 1053645 69 63 ; Align 1052945 91 225 ; Align 1052714 166 21 ; Align 1052690 173 21 ; Align 1052660 180 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr153PSE Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 164 Query range: 89 -> 209 Target range: 1029170 -> 1028792 90 : IleIleLysGluMetLysIleCysIleLysGluThrGlnGluTyrGluIleGluIl : 108 :!!|||:!!||||||||||||||| !:!! !.!!:!! !||||||! !!!::! LeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAspVa 1029170 : CTAATCGAAGAAATGAAGATTTGCTGTGAAACAGCGAAACCATACGAAAGAGACGT : 1029116 109 : ePheGlnLysTyrIleAlaLysPheLysThrValTrpGlyCysAsnIleThrCysM : 127 !||||||::!|||:!!! !|||!:!... ! !!!::! ! ! :!!!! . lPheGlnArgTyrValAspLysTyrSerLeuPheTyrValThrCysSerSerTrpP 1029115 : CTTTCAACGATACGTCGATAAATACTCTTTATTTTACGTAACATGTTCGTCGTGGT : 1029059 128 : etTyrLeuThrAlaLeuAlaPheThrIleGlySerValPheIleSerThrSerLeu : 145 !.||||||||||||:!! !.!...!:!:|||||| !.!!|||||| ! !!!!! heTyrLeuThrAlaValIleMetValLeuGlySerArgIleIleSerAspProPhe 1029058 : TTTACTTAACAGCAGTTATTATGGTTCTGGGAAGTCGGATTATATCTGATCCTTTT : 1029005 146 : SerCysAspAlaGluTyrProPheGlnLeuAsnTyrThrLeuValPheAlaIle<- : 164 !! !:!!|||! !|||||||||! :!!|||!:! !! !:!! ::!||| ProThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIl 1029004 : CCAACCAACGCCGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGTATCAT : 1028948 165 : ><->ArgTyrGlnSerPheLeuSerTyrGlnCysAlaTyrAlaCysAlaAspHis< : 181 ! !:!!|||||||||:!!.!! ||||||||| ! !::! :!! ePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisThrSerMetAsnV 1028947 : TTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACACTAGTATGAATG : 1028891 182 : -><-><-><->UnkLeuLeuTrpPheThrAlaProArgPheGluCysLeuCysVal : 195 |||||| |||.!!||| !!||||||||| ||| :!! alLeuThrAlaLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuMetMet 1028890 : TGCTAACTGCATTGTTATTACTATTTGCTGCAGCTCGTTTCGAGATACTGATGATG : 1028837 196 : GluLeuGlnAsnValThrAsnIleAsnMetLeuIleValCys : 209 ||||||::!||||||!:!:!!|||.!.! |||||| !||| GluLeuArgAsnValSerAspIleGluThrLeuIleLysCys 1028836 : GAGCTGAGGAATGTCAGTGACATTGAAACACTGATTAAATGT : 1028793 vulgar: AmOr153PSE 89 209 . KQ414618.1 1029170 1028792 - 164 M 74 222 G 0 6 M 17 51 G 0 12 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028793 1029170 164 - . gene_id 2 ; sequence AmOr153PSE ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028793 1029170 . - . KQ414618.1 exonerate:protein2genome:local exon 1028793 1029170 . - . insertions 18 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028793 1029170 164 - . alignment_id 2 ; Query AmOr153PSE ; Align 1029171 90 222 ; Align 1028943 164 51 ; Align 1028880 181 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr153PSE Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 157 Query range: 89 -> 207 Target range: 1038337 -> 1037965 90 : IleIleLysGluMetLysIleCysIleLysGluThrGlnGluTyrGluIleGluIl : 108 :!!|||:!!||||||||||||||| !:!! !.!!:!! !||||||! !!!::! LeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAspVa 1038337 : CTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGACGT : 1038283 109 : ePheGlnLysTyrIleAlaLysPheLysThrValTrpGlyCysAsnIleThrCysM : 127 !||||||::!|||:!! !||| ... ::: ! :!!!! . lPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpP 1038282 : CTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGT : 1038226 128 : etTyrLeuThrAlaLeuAlaPheThrIleGlySerValPheIleSerThrSerLeu : 145 !.||||||||||||:!! !.!...!:!!||||||:!!.!!|||||| ! !!!!! heTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPhe 1038225 : TTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTT : 1038172 146 : SerCysAspAlaGluTyrProPheGlnLeuAsnTyrThrLeuValPheAlaIle<- : 164 !! !:!!|||! !|||||||||! :!!|||!:! !! !:!! ::!||| ProThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIl 1038171 : CCAACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCAT : 1038115 165 : ><->ArgTyrGlnSerPheLeuSerTyrGlnCysAlaTyrAlaCysAla<-><->< : 179 ! !:!!|||||||||:!!.!! ||||||||| !..!::! ePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnV 1038114 : TTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATG : 1038058 180 : -><->AspHisUnkLeuLeuTrpPheThrAlaProArgPheGluCysLeuCysVal : 195 ..! |||||| ||||||.!! ! ||||||||| ||| ..! alLeuSerAlaLeuLeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThr 1038057 : TGCTTTCTGCACTGTTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACG : 1038004 196 : GluLeuGlnAsnValThrAsnIleAsnMetLeuIle : 207 ||||||::!||||||!.!:!!|||.!.! |||||| GluLeuArgAsnValAsnAspIleGluThrLeuIle 1038003 : GAGTTGAGGAATGTCAATGATATCGAAACACTGATT : 1037966 vulgar: AmOr153PSE 89 207 . KQ414618.1 1038337 1037965 - 157 M 74 222 G 0 6 M 15 45 G 0 12 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037966 1038337 157 - . gene_id 3 ; sequence AmOr153PSE ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1037966 1038337 . - . KQ414618.1 exonerate:protein2genome:local exon 1037966 1038337 . - . insertions 18 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037966 1038337 157 - . alignment_id 3 ; Query AmOr153PSE ; Align 1038338 90 222 ; Align 1038110 164 45 ; Align 1038053 179 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr153PSE Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 149 Query range: 277 -> 346 Target range: 1052134 -> 1051862 278 : SerIleAsnValSerArgLysIleTyrAspSerMetUnkTyrLysGlnMetLeuLy : 296 ||| !!!.||||||!:!!..:!:||||||! !! ! ||| !|||! |||:: SerAlaLysValSerGlnSerValTyrAspLeuThrTrpTyrGlyGlnThrLeuGl 1052134 : AGTGCAAAGGTTTCACAAAGTGTGTATGATTTAACGTGGTACGGACAAACATtgga : 1052080 297 : sMetGlnLysAsnLeuLeuLysUnkLeuIlePheGlnArgProValUnkIleTyrA : 315 :||||||||||||:::||| |||:!! !|||..!|||||| :!:! uMetGlnLysAsnValLeuTyrIleLeuValHisGlnGluProValIleLeuSerV 1052079 : aatgcagaaaaatgtattatacatattgGTACACCAAGAACCGGTAATTCTGTCAG : 1052023 316 : rgLeuZedLeuLeuSerLysLeuIleLeuArgTyrTyrCysLeu >>>> Targe : 330 ! ! :!!:!! !!:!!||| !|||||||||||||||! ! alSerCysIleValProGluLeuSerLeuArgTyrTyrCysSer++ 1052022 : TTAGTTGCATCGTGCCGGAGCTTTCTCTTCGTTATTATTGCTCGgt.......... : 1051976 331 : t Intron 1 >>>> TyrLeuSerAsnValPheSerIlePheThrAlaLeuHis : 342 65 bp ||||||||||||!.!||||||:!!||||||||||||!.! ++TyrLeuSerAsnAlaPheSerValPheThrAlaLeuArg 1051975 : ...............agTACCTGTCAAATGCGTTCTCGGTTTTCACCGCTTTGCGC : 1051877 343 : ValLeuGluAsp : 346 |||:!! !||| ValValLeuAsp 1051876 : GTCGTGCTGGAT : 1051863 vulgar: AmOr153PSE 277 346 . KQ414618.1 1052134 1051862 - 149 M 52 156 5 0 2 I 0 61 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1051863 1052134 149 - . gene_id 4 ; sequence AmOr153PSE ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1051979 1052134 . - . KQ414618.1 exonerate:protein2genome:local exon 1051979 1052134 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1051977 1051978 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1051914 1051978 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1051914 1051915 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051863 1051913 . - . KQ414618.1 exonerate:protein2genome:local exon 1051863 1051913 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1051863 1052134 149 - . alignment_id 4 ; Query AmOr153PSE ; Align 1052135 278 156 ; Align 1051914 330 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr172JOI Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 333 -> 391 Target range: 358648 -> 358896 334 : TyrAsnThrGluTrpTyrLysLeuProIleIleGluGlnLysLeuLeuLeuPheIleM : 353 |||!:!:!!! !||||||! ! !!:!: !! !|||||| !||||||!:!|||| TyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuLeuTyrIleM 358649 : TACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGTTATACATCA : 358706 354 : etGlnAsnAsnLeuLysSerLeuAsnPheValLeuLeuGlyThrMetIleAlaSerTy : 372 |||||:!!::!:!!:!!..!! !|||||| !:!! !||| !.!.:!: !!||||| etGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheValProSerTy 358707 : TGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGTGCCGAGTTA : 358763 373 : rAsnValTyrAlaMet >>>> Target Intron 1 >>>> IleLeuArgThrA : 382 |.!.! !!:!:!!! ! 74 bp ::: !|||! !: rGlnGlyPheSerThr++ ++LeuThrArgMetS 358764 : CCAAGGATTTTCTACGgt.........................agttGACCAGAATGT : 358867 383 : laPheSerTyrPheMetValIleTyrSer : 391 !!||||||||||||||||||!!: !||| erPheSerTyrPheMetValMetArgSer 358868 : CGTTCAGCTATTTTATGGTCATGCGTTCt : 358896 vulgar: AmOr172JOI 333 391 . KQ414693.1 358648 358896 + 114 M 44 132 5 0 2 I 0 70 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358649 358896 114 + . gene_id 1 ; sequence AmOr172JOI ; gene_orientation + KQ414693.1 exonerate:protein2genome:local cds 358649 358780 . + . KQ414693.1 exonerate:protein2genome:local exon 358649 358780 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local splice5 358781 358782 . + . intron_id 1 ; splice_site "GT" KQ414693.1 exonerate:protein2genome:local intron 358781 358854 . + . intron_id 1 KQ414693.1 exonerate:protein2genome:local splice3 358853 358854 . + . intron_id 0 ; splice_site "ag" KQ414693.1 exonerate:protein2genome:local cds 358855 358896 . + . KQ414693.1 exonerate:protein2genome:local exon 358855 358896 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358649 358896 114 + . alignment_id 1 ; Query AmOr172JOI ; Align 358649 334 132 ; Align 358855 378 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr164FIX Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 872 Query range: 0 -> 382 Target range: 1385619 -> 1387955 1 : MetAlaIleLysSerIleIleAsnArgProValGluIleSerLeuArgLeuIleGl : 19 |||.!! ! !!!!|||||||||||||||:!!||| !||||||||||||.!!|| MetThrSerThrThrIleIleAsnArgProLeuGluTyrSerLeuArgLeuPheGl 1385620 : ATGACTTCGACGACTATAATTAATCGTCCATTGGAATATAGCCTCCGTCTATTTGG : 1385674 20 : yAlaTrpProAsnSerSerCysGlnIleLeuLysTyrIleMetTrpThrIleValM : 38 ||||||||||:!!||||||! !..!.!!|||||| !|||!!:|||:!!! :!!| yAlaTrpProAspSerSerTyrSerPheLeuLysSerIleIleTrpSerThrIleM 1385675 : CGCCTGGCCAGATTCTTCCTATTCATTTCTGAAAAGTATTATTTGGTCGACGATAA : 1385731 39 : etSerIlePheLeuIlePheGlnTyrSerTyrCysIleIleHisIleLysThrAla : 56 ||:!!! ||||||:::|||||||||!!!|||||||||! !||||||!:!:!!... etAlaThrPheLeuMetPheGlnTyrTrpTyrCysIleThrHisIleArgSerGly 1385732 : TGGCAAcgtttttaatgtttcaataTTGGTATTGTATTACTCATATTAGATCAggt : 1385785 57 : ThrLeuIleAspIleLeuAspCysLeuSerIleThrCysSerAsnThrLeuLeuLe : 75 |||||||||:::|||||| ! ||||||||||||! ||||||:!!|||:!!!! ---LeuIleAspLeuLeuAspGlyLeuSerIleThrLeuSerAsnSerLeuValPh 1385786 : ---ttaattgatttattgGACGGATTGAGTATTACTTTATCAAATTCACTCGTCTT : 1385839 76 : uLeuLysPheIleIleIleTrpPheHisLys{Ar} >>>> Target Intron : 86 !||||||!!.||||||||||||.!!|||!..{||} 486 bp eLeuLysLeuIleIleIleTrpLeuHisSer{Ar}++ 1385840 : TCTCAAATTGATTATTATTTGGCTTCATAGT{CG}gt................... : 1385876 87 : 1 >>>> {g}ValLeuPheGluSerLeuIleIleIleAlaGluAspTrpAspAsn : 101 {|}..!!!!!:!! ! !|||! !! !:!! !||||||!! :!!||| ++{g}ThrPheTyrGlyIleLeuThrThrValPheGluAspCysAsnAsn 1385877 : ......ag{A}ACATTTTATGGCATTCTGACAACCGTATTCGAGGACTGCAATAAT : 1386403 102 : <->CysLysPheGluTrpAsnMetGluIleMetMetGlnLysAlaIleLeuSerTy : 119 ..!... ||| ...||||||! .!.||||||!!:||||||! TyrAlaSerThrValGluAsnLysArgIleMetThrAspLysAlaMetLeuSerSe 1386404 : TATGCTTCTAccgttgaaaataaacgaataatgACAGATAAAGCTATGTTGTCTTC : 1386460 120 : rArgIleAlaLysLeuMetLeuIleIlePheIleCysSerIlePheMetTyrAla< : 138 !||||||:::......:::::: !||| !!!!.!!.!!:!:|||:!! rArgIleSerAsnPheLeuIleGlyTyrPheSerIleThrPheLeuValTyrSerG 1386461 : TCGtatctcaaattttttaattggctATTTTTCGATCACGTTCCTTGTATATTCAG : 1386517 139 : -><->ValSerThrPhePheGlyProAspIleGlyAlaSerHisSerAspGlnLys : 154 !.! !..!!!.|||! ! !||| ..!!.! !! !||| |||::: lyLeuAlaLeuValLeuPheAspGluAspGlnAsnGlyProValSerLysGlnArg 1386518 : GACTTGCTCTAGTATTATTTGATGAAGATCAGAATGGACCGGTTTCCAaacaaagg : 1386571 155 : LysPheLeuLeuLysMetGluPheProPheGluAlaThrValSerProLeuTyrGl : 173 |||||||||::::::|||||||||||||||||||||||||||||||||! ||||| LysPheLeuIleArgMetGluPheProPheGluAlaThrValSerProArgTyrGl 1386572 : aaatttttaattagaatggAATTTCCTTTCGAAGCTACAGTCTCTCCACgttatga : 1386628 174 : uIleIleIleThrIleGlnLeuValMetGlnPheMetPheAlaThrMetAlaGlyM : 192 |||||||:::...:::|||...:::...::: .!..!.!.! ! |||!.!! uIleIleLeuValValGlnPheIlePheGluAlaPheIleValTyrGlyAlaAlaT 1386629 : aattattctagttgtacaatttatattcgaagcATTTATAGTTTATGGAGCAGCTA : 1386685 193 : etPheMetThrIleIleAlaThrPhe >>>> Target Intron 2 >>>> V : 201 ! !!:.!!:!!||||||..!.!. 399 bp : hrSerIleAlaLeuIleAlaValLeu++ ++I 1386686 : CATCGATAGCCCTAATTGCAGTACTAgt.........................agA : 1387111 202 : alLeuHisIleAlaSerGlnLeuAspIleIleCysAspArgLeuSerGluIleLeu : 219 !!||||||:!!!.!.!!|||:!!|||:!!:!:|||.!.!.!:!!!!!!!:|||! ! leLeuHisValGlyGlyGlnIleAspLeuLeuCysGlnAsnMetArgAspIleSer 1387112 : TATTACATGTTGGTGGTCAGATCGATTTATTGTGTCAAAACATGAGAGACATTTCT : 1387165 220 : AspGluHisLysGluGlnGluLeuArgIleArgIleIleLysLysLeuIleAlaLy : 238 !.!.|||:!!:!!:!!! !! !!:!! !! !! !|||||| ! :!!:!!!.!!: ArgAsnHisGluLysLysValProGlnLysLeuThrIleLysAspValValValAr 1387166 : CGTAATCATGAGAAGAAAGTACCGCAAAAACTGACAATAAAGGATGTCGTTGTTAG : 1387222 239 : sHisGlnArgThrLeuAsnLeuSerGluAsnIleGluAsnIlePheThrPheIleS : 257 !|||||||||! !:!!...||||||:!!|||||||||!..:!!||||||!:!|||| gHisGlnArgIleIleArgLeuSerLysAsnIleGluThrValPheThrTyrIleS 1387223 : GCATCAACGAATTATACGACTGTCTAAAAATATCGAGACAGTTTTTACTTATATAT : 1387279 258 : erLeuSerGlnPhePhePheAsnIleLeuValIleCysPheValAsnPheIleLeu : 275 |||||! ||||||... |||:::|||||||||||||||:!!!:!|||:!!||| erLeuCysGlnPheLeuSerAsnMetLeuValIleCysPheIleSerPheValLeu 1387280 : CATTATgccaatttttatcgaatatgcTGGTTATCTGTTTCATAAGCTTCGTTTTG : 1387333 276 : ValThr >>>> Target Intron 3 >>>> SerIleGlyThrGluGlnAla : 284 |||||| 85 bp |||:!:..!|||||||||.!! ValThr++ ++SerLeuAsnThrGluGlnThr 1387334 : GTAACCgt.........................agTCCTTGAACACGGAACAGACA : 1387445 285 : ProThrValIleSerLysCysPheProTyrTyrIleAlaLeuAsnPheGluAlaLe : 303 !! !:!!||| !||||||||||||||||||:!!|||:!!|||! !||||||!! ThrGlyLeuIleLeuLysCysPheProTyrTyrValAlaValAsnCysGluAlaPh 1387446 : ACTGGATTAATACTGAAATGTTTTCCCTATTACGTTGCTGTTAATTGTGAAGCATT : 1387502 304 : uIleLeuCysTyrThrGlyGluTyrLeuSerSerLys >>>> Target Intro : 316 !|||||||||||||||||||||||||||!!!|||||| 79 bp eIleLeuCysTyrThrGlyGluTyrLeuThrSerLys++ 1387503 : CATTTTATGTTATACCGGAGAATATCTAACCTCTAAGgt................. : 1387543 317 : n 4 >>>> SerGluAsnIleSerTrpIleAlaTyrAsnSerAsnTrpTyrGluL : 331 ||||||..!|||!!! ...|||||| ||||||!!:| ++SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspL 1387544 : ........agagtgAACGTATTACACAATCtgtgtacaattttctttggTACGATC : 1387665 332 : euSerIleTyrGluIleArgValLeuLeuLeuLeuIleMetArgSerGlnLysPro : 349 ||!.! ! ||| !|||::::::||||||:::|||:::|||||||||||| ! euLysProArgGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGlu 1387666 : TAAAACCTCGAGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAG : 1387719 350 : LeuThrLeuThrIleGlyLysTyrMetLysLeuSerLeuGluThrPheAlaAsn : 368 |||! !|||||| ||||||!:!:!!!!.|||||||||! .!!||||||||| LeuIleLeuThrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387720 : TTAATACTCACTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt : 1387776 369 : >>>> Target Intron 5 >>>> MetLeuLysIleSerAlaSerTyrAlaSe : 377 135 bp ||||||||| !||||||||||||!.!|| ++MetLeuLysAlaSerAlaSerTyrValSe 1387777 : .........................agatgCTAAAAGCTTCAGCCTCGTACGTATC : 1387938 378 : rValLeuTyrAlaLeu : 382 |||||||:!!|||:!! rValLeuHisAlaMet 1387939 : TGTTTTGCATGCAATG : 1387955 vulgar: AmOr164FIX 0 382 . KQ414716.1 1385619 1387955 + 872 M 56 168 G 1 0 M 28 84 S 0 2 5 0 2 I 0 482 3 0 2 S 1 1 M 15 45 G 0 3 M 36 108 G 0 6 M 63 189 5 0 2 I 0 395 3 0 2 M 77 231 5 0 2 I 0 81 3 0 2 M 38 114 5 0 2 I 0 75 3 0 2 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1385620 1387955 872 + . gene_id 1 ; sequence AmOr164FIX ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1385620 1385873 . + . KQ414716.1 exonerate:protein2genome:local exon 1385620 1385873 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local splice5 1385874 1385875 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1385874 1386359 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1386358 1386359 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1386360 1386711 . + . KQ414716.1 exonerate:protein2genome:local exon 1386360 1386711 . + . insertions 9 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1386712 1386713 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1386712 1387110 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1387109 1387110 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387111 1387341 . + . KQ414716.1 exonerate:protein2genome:local exon 1387111 1387341 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387342 1387343 . + . intron_id 3 ; splice_site "Gt" KQ414716.1 exonerate:protein2genome:local intron 1387342 1387426 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1387425 1387426 . + . intron_id 2 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387427 1387540 . + . KQ414716.1 exonerate:protein2genome:local exon 1387427 1387540 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387541 1387542 . + . intron_id 4 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387541 1387619 . + . intron_id 4 KQ414716.1 exonerate:protein2genome:local splice3 1387618 1387619 . + . intron_id 3 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 5 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 5 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 4 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1385620 1387955 872 + . alignment_id 1 ; Query AmOr164FIX ; Align 1385620 1 168 ; Align 1385788 58 84 ; Align 1386361 87 45 ; Align 1386409 102 108 ; Align 1386523 138 189 ; Align 1387111 201 231 ; Align 1387427 278 114 ; Align 1387620 316 156 ; Align 1387911 368 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr164FIX Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 182 Query range: 0 -> 82 Target range: 1390523 -> 1390769 1 : MetAlaIleLysSerIleIleAsnArgProValGluIleSerLeuArgLeuIleGl : 19 |||:!! !!!.!.!! !|||!:!|||||||||||||||.!!|||||||||! !|| MetSerHisAsnLysSerIleSerArgProValGluIleGlyLeuArgLeuThrGl 1390524 : ATGTCGCATAACAAAAGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGG : 1390578 20 : yAlaTrpProAsnSerSerCysGlnIleLeuLysTyrIleMetTrpThrIleValM : 38 | !||||||..!||||||! !:!!|||:!! :!!! |||! !|||:!!| yIleTrpProGlySerSerTyrGluIleIleValArgValThrTrpIleIleLeuM 1390579 : AATTTGGCCAGGTTCATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTA : 1390635 39 : etSerIlePheLeuIlePheGlnTyrSerTyrCysIleIleHisIleLysThrAla : 56 ||!!!:!! ! ! !|||||||||||| !!||| |||! |||:!! ! !::! etThrValValGlnIlePheGlnTyrArgTyrIleIleLysHisLeuAspGlySer 1390636 : TGACAGTTGTACAAATATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGT : 1390689 57 : ThrLeuIleAspIleLeuAspCysLeuSerIleThrCysSerAsnThrLeuLeuLe : 75 !.!||| :!!:!!:!!||| !!:!!.!!! !|||! !! !!!:!||||||! AsnLeuAlaAsnLeuIleAspSerValGlyThrThrLeuProTyrSerLeuLeuTy 1390690 : AATCTGGCGAACTTAATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTA : 1390746 76 : uLeuLysPheIleIleIleTrp : 82 !:::|||...||||||...||| rValLysLeuIleIlePheTrp 1390747 : Tgtcaaattaattattttctgg : 1390769 vulgar: AmOr164FIX 0 82 . KQ414716.1 1390523 1390769 + 182 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390524 1390769 182 + . gene_id 2 ; sequence AmOr164FIX ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1390524 1390769 . + . KQ414716.1 exonerate:protein2genome:local exon 1390524 1390769 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390524 1390769 182 + . alignment_id 2 ; Query AmOr164FIX ; Align 1390524 1 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr164FIX Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 315 -> 382 Target range: 1402435 -> 1402805 316 : SerGluAsnIleSerTrpIleAlaTyrAsnSerAsnTrpTyrGluLeuSerIleTy : 334 |||:!! |||.!! ! ||||||.!.! ! !||||||!!:||| !! ! SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerTh 1402436 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAAC : 1402490 335 : rGluIleArgValLeuLeuLeuLeuIleMetArgSerGlnLysProLeuThrLeuT : 353 !|||! !!:!:!!|||:!!! !:!!|||:!!|||||||||||| !!!!|||!..| rGluSerGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheT 1402491 : TGAAAGCCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACGTtta : 1402547 354 : hrIleGlyLysTyrMetLysLeuSerLeuGluThrPheAlaAsn >>>> Targe : 368 ||...||||||::: ...||||||||||||!:!|||.!! ! hrPheGlyLysPheSerSerLeuSerLeuGluSerPheThrAla++ 1402548 : cttttggaaaattttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.......... : 1402594 369 : t Intron 1 >>>> MetLeuLysIleSerAlaSerTyrAlaSerValLeuTyr : 380 169 bp !!::!!|||:!!|||||||||||| !||||||||| ! ++IleMetLysValSerAlaSerTyrIleSerValLeuLeu 1402595 : ...............agATCATGAAAGTCTCAGCATCATATATATCAGTACTTCTT : 1402797 381 : AlaLeu : 382 |||:!! AlaVal 1402798 : GCAGTG : 1402805 vulgar: AmOr164FIX 315 382 . KQ414716.1 1402435 1402805 + 134 M 52 156 5 0 2 I 0 165 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1402436 1402805 134 + . gene_id 3 ; sequence AmOr164FIX ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1402436 1402591 . + . KQ414716.1 exonerate:protein2genome:local exon 1402436 1402591 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1402592 1402593 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1402592 1402760 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1402759 1402760 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402761 1402805 . + . KQ414716.1 exonerate:protein2genome:local exon 1402761 1402805 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1402436 1402805 134 + . alignment_id 3 ; Query AmOr164FIX ; Align 1402436 316 156 ; Align 1402761 368 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr164FIX Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 311 -> 382 Target range: 1409037 -> 1409250 312 : LeuSerSerLysSerGluAsnIleSerTrpIleAlaTyrAsnSerAsnTrpTyrGl : 330 :!!..!! !:::|||::: |||... ! ||||||.!.! ! !||||||.! IleAspPheGlnSerLysLeuIleGlyAspThrAlaTyrGluPheLeuTrpTyrAs 1409038 : ATTGATTTTcagagtaaactgattggagACACGGCGTATGAATTTCTTTGGTATAA : 1409092 331 : uLeuSerIleTyrGluIleArgValLeuLeuLeuLeuIleMetArgSerGlnLysP : 349 .:!! ! ! |||! !|||:!!:!!||||||:!!|||:!:|||||||||||| nMetHisSerLysGluSerArgLeuMetLeuLeuValIleLeuArgSerGlnLysG 1409093 : TATGCATTCGAAGGAAAGCCGACTTATGTTGCTTGTAATACTACGATCACAGAAAG : 1409149 350 : roLeuThrLeuThrIleGlyLysTyrMetLysLeuSerLeuGluThrPheAlaAsn : 367 !!!!|||...|||...||||||::: ...||||||:!!|||!:!||||||..! lyPheThrPheThrPheGlyLysPheAlaSerLeuSerMetGluSerPheAlaGly 1409150 : GATTTACtttcacttttggaaaatttgcaagtCTTTCCATGGAAAGTTTTGCAGGC : 1409203 368 : MetLeuLysIleSerAlaSerTyrAlaSerValLeuTyrAlaLeu : 382 :!: ! !!:!!! ! ! !!::|||::: ||| ||| ValSer***LeuTyrPheValPheAlaAsnPheAsnTyrLeuLeu 1409204 : GTAAGTTAATTATACTTTGTATTcgctaattttaattatttatta : 1409250 vulgar: AmOr164FIX 311 382 . KQ414716.1 1409037 1409250 + 120 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1409038 1409250 120 + . gene_id 4 ; sequence AmOr164FIX ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1409038 1409250 . + . KQ414716.1 exonerate:protein2genome:local exon 1409038 1409250 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1409038 1409250 120 + . alignment_id 4 ; Query AmOr164FIX ; Align 1409038 312 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr164FIX Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 108 -> 201 Target range: 1398685 -> 1398958 109 : GluIleMetMetGlnLysAlaIleLeuSerTyrArgIleAlaLysLeuMetLeuIl : 127 :!!:!:||| :!!! !.! ||||||::: :::......:!!:!::!! LysLeuMetSerLysThrGlyGlnLeuSerPheTyrLeuThrSerIleValMetSe 1398686 : AAGTTGATGTCAAAAACCGGACAgctatctttttatttaacaagcATTGTTATGTC : 1398740 128 : eIlePheIleCysSerIlePheMetTyrAlaValSerThrPhePheGlyProAspI : 146 !:!:!:!!!:...||| ! .!.||| !..!!:!|||.!! !! !! ! rLeuTyrMetAlaSerAlaAlaPheTyrIleThrAsnThrIleGlyPheGlnGlyA 1398741 : TTTGTATATGGCATCTGCAGCATTTTACATAACTAATACTATTGGATTTCAAGGAA : 1398797 147 : leGlyAlaSerHisSerAspGlnLysLysPheLeuLeuLysMetGluPheProPhe : 164 !..!|||||| ||| ::!:!!.!!|||:!!||||||!!:!!.|||||| snAsnAlaSerValSer------ArgGluLeuLeuMetLysMetAspLeuProPhe 1398798 : ATAATGCTTCAGTATCT------CGGGAGCTCCTTATGAAAATGGATTTGCCTTTC : 1398845 165 : GluAlaThrValSerProLeuTyrGluIleIleIleThrIleGlnLeuValMetGl : 183 |||.!!!:!! !|||||| !||||||:!!:!!:!!|||! !|||:!!:!!!!:!! GluThrSerGluSerProAsnTyrGluLeuValValThrThrGlnValLeuIleHi 1398846 : GAGACCAGCGAATCGCCGAATTACGAACTTGTAGTAACTACACAGGTCCTTATTCA : 1398902 184 : nPheMetPheAlaThrMetAlaGlyMetPheMetThrIleIleAlaThrPheVal : 201 .!!. ! |||..! !||| |||! .!!:!!:!! !! ! ! ||| sLeuSerValAlaValAlaTyrGlyAlaPheAsnAlaLeuLeuLeuMetValVal 1398903 : CTTATCAGTGGCCGTAGCATACGGTGCATTCAATGCTCTTCTCTTAATGGTGGTA : 1398958 vulgar: AmOr164FIX 108 201 . KQ414716.1 1398685 1398958 + 100 M 43 129 G 2 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1398686 1398958 100 + . gene_id 5 ; sequence AmOr164FIX ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1398686 1398958 . + . KQ414716.1 exonerate:protein2genome:local exon 1398686 1398958 . + . insertions 0 ; deletions 2 KQ414716.1 exonerate:protein2genome:local similarity 1398686 1398958 100 + . alignment_id 5 ; Query AmOr164FIX ; Align 1398686 109 129 ; Align 1398815 154 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr167JOI Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 619 Query range: 204 -> 385 Target range: 1394161 -> 1395914 205 : IlePheHisIleGlyGlyGlnIleGluIleLeuHisLysThrLeuLysAsnIleSe : 223 |||||||||||||||||||||||||||!!:|||!!.|||.!!||| |||||||| IlePheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAsnIleSe 1394162 : ATATTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaatatttc : 1394216 224 : rIleAsnAspGluLysProGluSerSerArgIleIleIleLysSerLeuIleAspA : 242 ||||...|||||||||! !..!! !||||||! !! !! !|||||||||||| !!| rIleLysAspGluLysHisArgLeuSerArgAsnThrThrLysSerLeuIleHisA 1394217 : tattaaagATGAGAAACACAGATTATCGAGAAACACCACCAAATCATTAATTCACA : 1394273 243 : rgHisTyrArgIleIleIleGlySerGluTyrIleGluSerLeuPheSerTyrIle : 260 |||||:!!||||||||||||..!|||!!:! !|||||||||||||||||||||||| rgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIle 1394274 : GACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACATT : 1394327 261 : AlaLeuMetGlnLeuIleCysAsnThrLeuIleIleCysCysIleGlyPheLeuIl : 279 ||||||||||||! !:!!||||||||||||:!!||||||||||||||||||||||| AlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGlyPheLeuIl 1394328 : GCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGATTCTTAAT : 1394384 280 : e >>>> Target Intron 1 >>>> ValValAlaLeuAsnSerAsnLeuLy : 288 | 470 bp !.! !! ! !:::...|||:::|| e++ ++AlaPheAsnThrAspGlyAsnIleLy 1394385 : Agt.........................agGCATTTAATACAGatggaaatataaa : 1394881 289 : sLeuLeuIleArgIleSerPhePheTyrIleAlaIleThrLeuGluAlaPheIleP : 307 | ...|||::: !.!!||||||||||||||||||:!!||||||||||||| sThrPheIleLysThrLeuLeuPheTyrIleAlaIleThrMetGluAlaPheIleP 1394882 : aacatttataaaaacattACTCTTTTACATCGCTATCACTATGGAAGCATTCATCT : 1394938 308 : heSerIleAlaGlyGluTyrLeuSerAsnLys >>>> Target Intron 2 > : 318 |||||.!!|||||||||||||||||||||||| 353 bp heSerPheAlaGlyGluTyrLeuSerAsnLys++ 1394939 : TCTCCTTTGCCGGAGAATATCTCAGTAACAAAgt...................... : 1394973 319 : >>> SerLeuSerValSerIleSerAlaTyrGluSerProTrpTyrLeuLeuSer : 334 |||||||||:!!|||! !:!!||||||...||||||||||||||||||..! ++SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAsp 1394974 : ...agAGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGAT : 1395372 335 : ProLysAsnArgGlyValMetIleLeuLeuMetValArgSerGlnArgArgLeuTh : 353 |||:!!:!!||| !:!!!!:||||||||||||:!!|||||||||||||||||||| ProGlnAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuTh 1395373 : CCTCAAGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAAC : 1395429 354 : rIleThrAlaGlyLysPheMetAspLeuSerMetGlnGlyPheAlaAsn >>>> : 370 |||||||||||||||||||||||||||||||:!::!!|||||||||||| rIleThrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsn++ 1395430 : AATCACCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATgt..... : 1395482 371 : Target Intron 3 >>>> ValLeuLysAlaSerValSerTyrValSerIleL : 381 387 bp :::||||||||||||!.!||||||:!!|||:!!| ++IleLeuLysAlaSerAlaSerTyrIleSerValL 1395483 : ....................agatcTTAAAGGCTTCTGCATCGTACATATCTGTAC : 1395900 382 : euTyrAlaMetTyr : 385 |||||||||||||| euTyrAlaMetTyr 1395901 : TGTATGCGATGTAC : 1395914 vulgar: AmOr167JOI 204 385 . KQ414716.1 1394161 1395914 + 619 M 75 225 5 0 2 I 0 466 3 0 2 M 38 114 5 0 2 I 0 349 3 0 2 M 52 156 5 0 2 I 0 383 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394162 1395914 619 + . gene_id 1 ; sequence AmOr167JOI ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394162 1394386 . + . KQ414716.1 exonerate:protein2genome:local exon 1394162 1394386 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394387 1394388 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394387 1394856 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394855 1394856 . + . intron_id 0 ; splice_site "aG" KQ414716.1 exonerate:protein2genome:local cds 1394857 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394857 1394970 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394971 1394972 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394971 1395323 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1395322 1395323 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1395324 1395479 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395479 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1395480 1395481 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1395480 1395866 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1395865 1395866 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1395867 1395914 . + . KQ414716.1 exonerate:protein2genome:local exon 1395867 1395914 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394162 1395914 619 + . alignment_id 1 ; Query AmOr167JOI ; Align 1394162 205 225 ; Align 1394857 280 114 ; Align 1395324 318 156 ; Align 1395867 370 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr167JOI Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 593 Query range: 4 -> 205 Target range: 1390535 -> 1392022 5 : ArgSerIleSerHisProIleValIleGlyLeuArgLeuIleGlyIleTrpProLy : 23 !:!|||||||||!.!|||:!:! !|||||||||||||||! !|||||||||||| LysSerIleSerArgProValGluIleGlyLeuArgLeuThrGlyIleTrpProGl 1390536 : AAAAGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGGAATTTGGCCAGG : 1390590 24 : sSerSerTyrGluIleIleValArgPheMetTrpValIleIleMetMetCysAlaG : 42 |||||||||||||||||||||||| ! ! |||:!!|||:!!|||! !!.!| ySerSerTyrGluIleIleValArgValThrTrpIleIleLeuMetThrValValG 1390591 : TTCATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTATGACAGTTGTAC : 1390647 43 : lnIlePheGlnTyrGlnTyrIleIleAsnHisIleGlyPheAspAsnLeuAlaAsp : 60 ||||||||||||||!:!|||||||||!!.|||:!!! ! !..!|||||||||:!! lnIlePheGlnTyrArgTyrIleIleLysHisLeuAspGlySerAsnLeuAlaAsn 1390648 : AAATATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGTAATCTGGCGAAC : 1390701 61 : LeuIleAspSerValSerThrThrLeuProTyrSerLeuLeuCysPheLysLeuIl : 79 |||||||||||||||.!!||||||||||||||||||||||||! ! |||||||| LeuIleAspSerValGlyThrThrLeuProTyrSerLeuLeuTyrValLysLeuIl 1390702 : TTAATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTATgtcaaattaat : 1390758 80 : eSerPheTrpThrLysArg{Gl} >>>> Target Intron 1 >>>> {u}I : 87 | |||||||||||||||{! } 884 bp {!}| eIlePheTrpThrLysArg{Gl}++ ++{y}I 1390759 : tattttctggaCTAAACGT{GG}gt.........................ag{a}a : 1391666 88 : lePheGluAsnIleLeuIleGlyMetTyrHisAspTrpThrAsnAlaPheAlaThr : 105 |||||||||||:::|||:!:||||||! !:!!||||||!:!|||:!!! :!!||| lePheGluAsnMetLeuValGlyMetSerAsnAspTrpSerAsnSerSerSerThr 1391667 : tattcgaaaatatgtTAGTGGGAATGTCTAACGATTGGAGTAATTCTTCATCAACG : 1391720 106 : AspPheIleValGluAspMetIleLysLysThrGluLeuAlaTyrTyrCysSerAs : 124 ! ||| !:!!.!.! !||||||!..|||.!!|||||||||||| !! !|||!! LysPheAspIleAsnAlaMetIleSerLysAlaGluLeuAlaTyrArgTyrSerLy 1391721 : AAATTTGACATAAACGCCATGATAAGTAAAGCTGAACTTGCGTATCGTTATTCGAA : 1391777 125 : nLeuIleLeuSerIleTyrAlaIleAlaValPheLeuTyrValGlyValPheLeuG : 143 .:!!|||:!!|||! !|||||||||||||||||| !|||..!.!!||||||!!!| sValIleMetSerThrTyrAlaIleAlaValPheAlaTyrThrSerValPhePheG 1391778 : GGTAATTATGAGCACATATGCTATTGCCGTTTTCGCTTATACCAGCGTGTTTTTCG : 1391834 144 : luLeuSerHisAspHisAspGlnGluAsnArgSerAsnLeuSerProGluLeuLeu : 161 ||!!!! !!.! !! !!:!!.!.! .!. !..! !|||! !||||||||| luPheMetArgHisAspAsnAspGlyGluTyrAspLeuLysSerArgGluLeuLeu 1391835 : AGTTTATGCGTCACGACAACGACGGCGAATATGATTTAAAGTCTCGAGAACTTTTG : 1391888 162 : IleLysMetAspLeuProPheThrTyrAspGluSerProIleTyrGluTyrValPh : 180 !!:||||||||||||||||||.!!||| !!:!!!!!|||! |||:!!!::||||| MetLysMetAspLeuProPheAlaTyrTyrLysThrProThrTyrGlnTrpValPh 1391889 : ATGAAAATGGACCTCCCGTTTGCGTATTACAAAACACCGACGTATCAATGGGTATT : 1391945 181 : eIleValGlnPheIleGlnLeuPhePheIleAlaSerSerIleAlaValLeuAspA : 199 |:!!|||||||||:!!||||||!!..!.! !||||||:!!|||!.!:!!||||||| eValValGlnPheLeuGlnLeuLeuIleAsnAlaSerAlaIleGlyMetLeuAspA 1391946 : TGTTGTACAATTTCTTCAGCTGTTGATAAATGCATCTGCTATTGGTATGTTAGATG : 1392002 200 : laLeuIleIleThrLeuIle : 205 |||||||||||||||||:!! laLeuIleIleThrLeuVal 1392003 : CTTTGATAATTACGTTGGTA : 1392022 vulgar: AmOr167JOI 4 205 . KQ414716.1 1390535 1392022 + 593 M 81 243 S 0 2 5 0 2 I 0 880 3 0 2 S 1 1 M 119 357 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390536 1392022 593 + . gene_id 2 ; sequence AmOr167JOI ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1390536 1390780 . + . KQ414716.1 exonerate:protein2genome:local exon 1390536 1390780 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1390781 1390782 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1390781 1391664 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1391663 1391664 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1391665 1392022 . + . KQ414716.1 exonerate:protein2genome:local exon 1391665 1392022 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390536 1392022 593 + . alignment_id 2 ; Query AmOr167JOI ; Align 1390536 5 243 ; Align 1391666 87 357 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr167JOI Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 189 Query range: 160 -> 287 Target range: 1386978 -> 1387359 161 : LeuIleLysMetAspLeuProPheThrTyrAspGluSerProIleTyrGluTyrVa : 179 ::::::|||::: ||| ::: ::: ||| ...||| IleLeuLysIleTyrLeuLysTyrIleHisThrGluIleThrPheTyrTyrIleTy 1386979 : atacttaaaatatatttaaaatacattcacactgaaataactttttactatattta : 1387033 180 : lPheIleValGlnPheIleGlnLeuPhePheIleAlaSerSerIleAlaValLeuA : 198 ||||||:::::: ! !.!.!!! ! ! ::: ::::!! rPheIleIleArgHisGlnAspPheAsnThrTyrLeuIlePheLeuLeuIleIle* 1387034 : ttttataattaggCATCAAGATTTTAACACTTatctaatatttttgttaatcaTTT : 1387090 199 : spAlaLeuIleIleThrLeuIlePheHisIleGlyGlyGlnIleGluIleLeuHis : 216 ! ! !:!: !! !|||!!.|||:!!||||||||||||!!::!!||| ! **LysAlaSerLeuLeu***IleLeuHisValGlyGlyGlnIleAspLeuLeuCys 1387091 : GAAAAGCTTCACTGTTGTAGATATTACATGTTGGTGGTCAGATCGATTTATTGTGT : 1387144 217 : LysThrLeuLysAsnIleSerIleAsnAspGluLysProGluSerSerArgIleIl : 235 :!!!.!:!!!:!:!!|||||| !||| !!|||||| !! ! !!..!!:!:!:! GlnAsnMetArgAspIleSerArgAsnHisGluLysLysValProGlnLysLeuTh 1387145 : CAAAACATGAGAGACATTTCTCGTAATCATGAGAAGAAAGTACCGCAAAAACTGAC : 1387201 236 : eIleLysSerLeuIleAspArgHisTyrArgIleIleIleGlySerGluTyrIleG : 254 !||||||..!:!!:!!! !|||||| ! ||||||||| ! !|||:!! !!|||| rIleLysAspValValValArgHisGlnArgIleIleArgLeuSerLysAsnIleG 1387202 : AATAAAGGATGTCGTTGTTAGGCATCAACGAATTATACGACTGTCTAAAAATATCG : 1387258 255 : luSerLeuPheSerTyrIleAlaLeuMetGlnLeuIleCysAsnThrLeuIleIle : 272 ||!!!:!!|||!!!||||||:!!||| |||...::: ||| |||:!!||| luThrValPheThrTyrIleSerLeuCysGlnPheLeuSerAsnMetLeuValIle 1387259 : AGACAGTTTTTACTTATATATCATTATgccaatttttatcgaatatgcTGGTTATC : 1387312 273 : CysCysIleGlyPheLeuIleValValAlaLeuAsnSerAsnLeu : 287 |||! !|||.!!|||:!!:!:|||..!!.. ... :::||| CysPheIleSerPheValLeuValThrValSerLysPheHisLeu 1387313 : TGTTTCATAAGCTTCGTTTTGGTAACCGtaagtaaatttcattta : 1387359 vulgar: AmOr167JOI 160 287 . KQ414716.1 1386978 1387359 + 189 M 127 381 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1386979 1387359 189 + . gene_id 3 ; sequence AmOr167JOI ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1386979 1387359 . + . KQ414716.1 exonerate:protein2genome:local exon 1386979 1387359 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1386979 1387359 189 + . alignment_id 3 ; Query AmOr167JOI ; Align 1386979 161 381 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr167JOI Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 317 -> 384 Target range: 1387619 -> 1387955 318 : SerLeuSerValSerIleSerAlaTyrGluSerProTrpTyrLeuLeuSerProLy : 336 ||| ! !!:!!!!! !|||...|||... |||||| !|||!.!|||:: SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 337 : sAsnArgGlyValMetIleLeuLeuMetValArgSerGlnArgArgLeuThrIleT : 355 !.!. ! :::::::::|||:::::::::|||||||||!:!..!|||! !:!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 356 : hrAlaGlyLysPheMetAspLeuSerMetGlnGlyPheAlaAsn >>>> Targe : 370 ||||||||||||||:!!:!!||||||:!! !.!||||||||| hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt.......... : 1387778 371 : t Intron 1 >>>> ValLeuLysAlaSerValSerTyrValSerIleLeuTyr : 382 135 bp :::||||||||||||!.!||||||||||||:!!|||:!! ++MetLeuLysAlaSerAlaSerTyrValSerValLeuHis 1387779 : ...............agatgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTTGCAT : 1387947 383 : AlaMet : 384 |||||| AlaMet 1387948 : GCAATG : 1387955 vulgar: AmOr167JOI 317 384 . KQ414716.1 1387619 1387955 + 158 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387955 158 + . gene_id 4 ; sequence AmOr167JOI ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387955 158 + . alignment_id 4 ; Query AmOr167JOI ; Align 1387620 318 156 ; Align 1387911 370 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr167JOI Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 235 -> 281 Target range: 1401096 -> 1401234 236 : IleLysSerLeuIleAspArgHisTyrArgIleIleIleGlySerGluTyrIleGl : 254 |||||| ...|||:!!|||||| ! ..!||||||:!! !:!!||| ||||| IleLysPhePheIleAsnArgHisGlnGluIleIleValPheAlaGluArgIleGl 1401097 : ataaaattcttcattaACAGACATCAGGAAATTATTGTTTTTGCAGAAAGAATTGA : 1401151 255 : uSerLeuPheSerTyrIleAlaLeuMetGlnLeuIleCysAsnThrLeuIleIleC : 273 |!.!||||||!!!|||!!:||||||! ||||||:!:! !||||||:!!||||||| uLysLeuPheThrTyrMetAlaLeuSerGlnLeuValSerAsnThrIleIleIleC 1401152 : GAAACTTTTTACATACATGGCTCTCAGTCAACTTGTGTCCAATACGATAATTATAT : 1401208 274 : ysCysIleGlyPheLeuIleValVal : 281 |||||:!!|||||||||:!!|||:!! ysCysValGlyPheLeuValValIle 1401209 : GTTGCGTAGGATTTCTCGTTGTAATT : 1401234 vulgar: AmOr167JOI 235 281 . KQ414716.1 1401096 1401234 + 150 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401097 1401234 150 + . gene_id 5 ; sequence AmOr167JOI ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1401097 1401234 . + . KQ414716.1 exonerate:protein2genome:local exon 1401097 1401234 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401097 1401234 150 + . alignment_id 5 ; Query AmOr167JOI ; Align 1401097 236 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr167JOI Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 158 -> 205 Target range: 1405959 -> 1406100 159 : GluLeuLeuIleLysMetAspLeuProPheThrTyrAspGluSerProIleTyrGl : 177 ||||||||||||||||||||||||||||||!.! :!!.!.|||||||||||||| GluLeuLeuIleLysMetAspLeuProPheAsnThrAsnAsnSerProIleTyrGl 1405960 : GAACTTTTGATAAAAATGGACTTGCCATTTAATACGAACAATTCGCCTATTTACGA : 1406014 178 : uTyrValPheIleValGlnPheIleGlnLeuPhePheIleAlaSerSerIleAlaV : 196 | |||.!.:!!:!!|||!:!:!! ! ! ! ! !|||! !!!!.!!!.!| uLeuValIleValLeuGlnTyrLeuCysLysValSerThrAlaPheThrPheGlyV 1406015 : GCTGGTAATAGTTTTACAATACCTATGCAAAGTATCGACAGCTTTTACGTTTGGTG : 1406071 197 : alLeuAspAlaLeuIleIleThrLeuIle : 205 ||!!!..!::!|||:!!:!:! !:!!:!! alPheSerSerLeuLeuLeuMetMetVal 1406072 : TATTCAGCAGTCTGCTTTTGATGATGGTA : 1406100 vulgar: AmOr167JOI 158 205 . KQ414716.1 1405959 1406100 + 104 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1405960 1406100 104 + . gene_id 6 ; sequence AmOr167JOI ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1405960 1406100 . + . KQ414716.1 exonerate:protein2genome:local exon 1405960 1406100 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1405960 1406100 104 + . alignment_id 6 ; Query AmOr167JOI ; Align 1405960 159 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr167JOI Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 149 -> 205 Target range: 1398790 -> 1398958 150 : GlnGluAsnArgSerAsnLeuSerProGluLeuLeuIleLysMetAspLeuProPh : 168 |||! !|||!.!:!!::::!!|||! !|||||||||!!:||||||||||||||||| GlnGlyAsnAsnAlaSerValSerArgGluLeuLeuMetLysMetAspLeuProPh 1398791 : CAAGGAAATAATGCTTCAGTATCTCGGGAGCTCCTTATGAAAATGGATTTGCCTTT : 1398845 169 : eThrTyrAspGluSerProIleTyrGluTyrValPheIleValGlnPheIleGlnL : 187 | ! !..!|||||||||! !|||||| !||| ! ! !..!||| !!:!! ! eGluThrSerGluSerProAsnTyrGluLeuValValThrThrGlnValLeuIleH 1398846 : CGAGACCAGCGAATCGCCGAATTACGAACTTGTAGTAACTACACAGGTCCTTATTC : 1398902 188 : euPhePheIleAlaSerSerIleAlaValLeuAspAlaLeuIleIleThrLeuIle : 205 !!!.! :!:||| !:!! !!.!!.!!!!:!!||||||:!!:!!! !:!!:!! isLeuSerValAlaValAlaTyrGlyAlaPheAsnAlaLeuLeuLeuMetValVal 1398903 : ACTTATCAGTGGCCGTAGCATACGGTGCATTCAATGCTCTTCTCTTAATGGTGGTA : 1398956 vulgar: AmOr167JOI 149 205 . KQ414716.1 1398790 1398958 + 103 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1398791 1398958 103 + . gene_id 7 ; sequence AmOr167JOI ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1398791 1398958 . + . KQ414716.1 exonerate:protein2genome:local exon 1398791 1398958 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1398791 1398958 103 + . alignment_id 7 ; Query AmOr167JOI ; Align 1398791 150 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr166JOI Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 687 Query range: 0 -> 199 Target range: 1405074 -> 1406100 1 : MetThrSerIleAsnThrIleSerArgSerValLysTyrGlyLeuTyrPheAlaAl : 19 ||||||||||||||||||||||||!:!!!!||||||:!!|||||| !!:!||||| MetThrSerIleAsnThrIleSerGlnThrValLysHisGlyLeuArgTyrAlaAl 1405075 : atgaCATCGATTAATACGATAAGTCAAACTGTAAAACATGGCCTCCGTTATGCTGC : 1405129 20 : aSerTrpProGlyAlaSerPheSerIleLeuHisLysPhePheTrpThrIleIleP : 38 |||||||||||||.!! !!! ! |||||||||||||||||||||||||||:!!. aSerTrpProGlyThrProSerLeuIleLeuHisLysPhePheTrpThrIleValM 1405130 : CTCTTGGCCAGGAACACCATCGTtgattttacataaatttttttggaCAATTGTCA : 1405186 39 : heCysThrLeuHisIleSerGlnTyrSerTyrLeuIleMetHisTyrLysTyrAsp : 56 !.||| !|||!!.|||! !||||||.!!|||:!!|||! !||||||||||||:!! etCysGlyLeuGlnIleTyrGlnTyrGlyTyrValIleArgHisTyrLysTyrAsn 1405187 : TGTGTGGACTTCAAATTTATCAGTACGGCTACGTGATCAGGCATTATAAATATAAC : 1405240 57 : AlaLeuThrGluIleIleAspAsnIleSerIleCysLeuProHisSerLeuValCy : 75 .!!|||..!!!:! !:!!||||||:!:|||||||||:!!||| !!!!|||||||| ThrLeuValAspThrValAspAsnLeuSerIleCysMetProPheThrLeuValCy 1405241 : ACTCTTGTGGATACAGTAGATAATTTGAGCATTTGCATGCCATTCACTTTAGTGTG : 1405297 76 : sIleLysLeuPheThrAlaTrpThrGlnAsn{Th} >>>> Target Intron : 86 |||||||||||||..!|||||||||!!...!{ } 429 bp sIleLysLeuPheValAlaTrpThrHisArg{Gl}++ 1405298 : CATCAAATTATTTGTTGCTTGGACACATCGC{GG}gt................... : 1405334 87 : 1 >>>> {r}LeuIleArgAsnIleLeuLeuSerMetGluGluGluCysGlnLys : 101 {!}|||:!! !:!!|||:!!! !!!!|||||||||!!:|||:!!||| ++{y}LeuLeuTyrAspIleIleSerThrMetGluGluAspCysLysLys 1405335 : ......ag{t}CTACTTTACGACATTATCTCGACCATGGAAGAAGACTGTAAAAAG : 1405804 102 : TyrAlaIleMetAspThrAspAsnLeuIleSerLysThrAlaTyrLeuSerTyrAr : 120 ||||||:!!:::|||||| |||||||||||||||||||||:!!||||||!:!|| TyrAlaValLeuAspThrLysAsnLeuIleSerLysThrAlaHisLeuSerPheAr 1405805 : TACGCTGTTCttgatacaaaaaatttaatatcaaaaaCAGCACATCTATCTTTTCG : 1405861 121 : gLeuThrSerThrIleIleCysThrCysValAlaSerThrValCysTyrAlaIleG : 139 |||||||!:!! !:!:||||||! !||||||:!!||||||!.!||||||||||||| gLeuThrAsnIleValIleCysIleCysValSerSerThrAlaCysTyrAlaIleG 1405862 : ATTAACCAATATAGTGATATGTATCTGTGTATCATCCACGGCATGTTATGCAATTG : 1405918 140 : lyIlePheSerHisGlnGluValAsnValThrSerSerArgGluLeuLeuLeuLys : 157 ||:!!!!.:!!! |||..!..!|||:!!|||:!! !!||||||||||||:!!||| lyValLeuAlaProGlnArgThrAsnIleThrAlaProArgGluLeuLeuIleLys 1405919 : GAGTTTTGGCGCCACAAAGGACTAATATAACAGCACCTCGAGAACTTTTGATAAAA : 1405972 158 : MetAsnLeuProPheAspThrAsnLysSerProIleTyrGluPheValValIleIl : 176 |||:!!|||||||||:!!||||||!!.|||||||||||||||.!.|||:!!:!!:! MetAspLeuProPheAsnThrAsnAsnSerProIleTyrGluLeuValIleValLe 1405973 : ATGGACTTGCCATTTAATACGAACAATTCGCCTATTTACGAGCTGGTAATAGTTTT : 1406029 177 : eGlnTyrPheTyrGlnValSerAlaAlaPheValPheGlyValPheAlaAlaPheL : 195 !||||||.!.! !:!!||||||.!!||||||..!||||||||||||::!::!.!.| uGlnTyrLeuCysLysValSerThrAlaPheThrPheGlyValPheSerSerLeuL 1406030 : ACAATACCTATGCAAAGTATCGACAGCTTTTACGTTTGGTGTATTCAGCAGTCTGC : 1406086 196 : euLeuMetIleVal : 199 ||||||||!!:||| euLeuMetMetVal 1406087 : TTTTGATGATGGTA : 1406100 vulgar: AmOr166JOI 0 199 . KQ414716.1 1405074 1406100 + 687 M 85 255 S 0 2 5 0 2 I 0 425 3 0 2 S 1 1 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1405075 1406100 687 + . gene_id 1 ; sequence AmOr166JOI ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1405075 1405331 . + . KQ414716.1 exonerate:protein2genome:local exon 1405075 1405331 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1405332 1405333 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1405332 1405760 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1405759 1405760 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1405761 1406100 . + . KQ414716.1 exonerate:protein2genome:local exon 1405761 1406100 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1405075 1406100 687 + . alignment_id 1 ; Query AmOr166JOI ; Align 1405075 1 255 ; Align 1405762 87 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr166JOI Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 610 Query range: 198 -> 374 Target range: 1408216 -> 1409531 199 : ValLeuHisValGlyCysGlnIleAspIleMetCysGlnThrLeuMetLysThrTh : 217 |||||||||:!!|||||||||||||||||||||||||||||||||! !:!!..! ! ValLeuHisLeuGlyCysGlnIleAspIleMetCysGlnThrLeuLysGluValPr 1408217 : GTGCTTCATCTAGGTTGTCAAATCGATATTATGTGCCAGACATTAAAGGAGGTTCC : 1408271 218 : rHisArgAspGlnLysLysLeuLysPhePheIleLysArgHisGlnGluIleIleL : 236 !:!!!:!:!!:!!! :!!|||!:!|||||||||!..|||||||||:!!||||||: oTyrLysAsnLysThrGlnLeuArgPhePheIleSerArgHisGlnGlnIleIleI 1408272 : TTATAAGAATAAAACTCAACTGAGATTCTTCATCAGCAGACATCAACAGATCATCA : 1408328 237 : euLeuAlaGluLysIleGluLysPhePheThrTyrIleAlaLeuSerGlnLeuIle : 254 !!!!!||||||!:!|||||||||.!.|||||||||:!!|||||||||||||||:!! lePheAlaGluArgIleGluLysLeuPheThrTyrLeuAlaLeuSerGlnLeuLeu 1408329 : TATTTGCAGAGAGAATAGAAAAACTGTTTACGTATCTAGCACTTAGTCAACTTCTC : 1408382 255 : SerAsnThrLeuIleThrCysCysLeuGlyTyrLeuIleValIle >>>> Targ : 270 ||||||||||||||||||||||||:!!||||||:!!|||!.!.!! SerAsnThrLeuIleThrCysCysValGlyTyrIleIleAlaPhe++ 1408383 : TCGAATACCCTAATTACTTGCTGCGTGGGTTATATTATCGCATTTgt......... : 1408432 271 : et Intron 1 >>>> ThrLeuHisLeuGlyAsnAsnIle<->IleLeuIleLy : 281 92 bp .!!|||!!. !..!|||....!! !!:|||||||| ++AlaLeuGlnAsnAsnAsnGlyPheLysMetLeuIleLy 1408433 : ................agGCACTACAAAATAATAATGGATTTAAAATGTTGATCAA : 1408558 282 : sTyrIleMetPheTyrValAlaValCysSerGluAlaPheIleTyrCysPheAlaG : 300 |!:!:!!:!:!:!|||:!!||||||||||||||||||||||||||||||||||||| sPheValValTyrTyrMetAlaValCysSerGluAlaPheIleTyrCysPheAlaG 1408559 : ATTTGTTGTATATTACATGGCTGTGTGCTCAGAAGCGTTCATATACTGCTTTGCTG : 1408615 301 : lyGluTyrLeuSerIleLys >>>> Target Intron 2 >>>> SerLysL : 309 |||||||||||!:!|||||| 414 bp ||||||| lyGluTyrLeuAsnIleLys++ ++SerLysL 1408616 : GAGAGTACCTTAATATCAAGgt.........................agagtaaac : 1409056 310 : euIleAlaAspThrAlaTyrGluPheLeuTrpTyrAsnMetAsnProAsnGluSer : 327 |||||...|||||||||||||||||||||||||||||||||:!! !!!!.|||||| euIleGlyAspThrAlaTyrGluPheLeuTrpTyrAsnMetHisSerLysGluSer 1409057 : tgattggagACACGGCGTATGAATTTCTTTGGTATAATATGCATTCGAAGGAAAGC : 1409110 328 : ArgLeuLeuIleProIleIleLeuArgAlaGlnArgGlyPheThrPheThrPheGl : 346 ||||||:!!:!:! !:!!|||||||||:!!|||!:!|||||||||||||||||||| ArgLeuMetLeuLeuValIleLeuArgSerGlnLysGlyPheThrPheThrPheGl 1409111 : CGACTTATGTTGCTTGTAATACTACGATCACAGAAAGGATTTACtttcacttttgg : 1409167 347 : yLysPheAlaThrLeuSerMetGluSerPheThrAla >>>> Target Intro : 359 ||||||||||:::||||||||||||||||||.!!!.! 278 bp yLysPheAlaSerLeuSerMetGluSerPheAlaGly++ 1409168 : aaaatttgcaagtCTTTCCATGGAAAGTTTTGCAGGCgt................. : 1409208 360 : n 3 >>>> IleMetLysAlaSerGlySerTyrMetSerValLeuLeuAlaMetT : 374 |||||||||||||||!.!||||||!!:||||||||||||||||||: ++IleMetLysAlaSerAlaSerTyrIleSerValLeuLeuAlaMetS 1409209 : ........agattATGAAAGCTTCTGCATCGTATATATCCGTATTGCTCGCAATGa : 1409529 375 : hr : 374 :: er 1409530 : gt : 1409531 vulgar: AmOr166JOI 198 374 . KQ414716.1 1408216 1409531 + 610 M 71 213 5 0 2 I 0 88 3 0 2 M 8 24 G 0 3 M 29 87 5 0 2 I 0 410 3 0 2 M 52 156 5 0 2 I 0 274 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408217 1409531 610 + . gene_id 2 ; sequence AmOr166JOI ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408217 1408429 . + . KQ414716.1 exonerate:protein2genome:local exon 1408217 1408429 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408430 1408431 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408430 1408521 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1408520 1408521 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1408522 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408522 1408635 . + . insertions 3 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408636 1408637 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408636 1409049 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1409048 1409049 . + . intron_id 1 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409050 1409205 . + . KQ414716.1 exonerate:protein2genome:local exon 1409050 1409205 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1409206 1409207 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1409206 1409483 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1409482 1409483 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409484 1409531 . + . KQ414716.1 exonerate:protein2genome:local exon 1409484 1409531 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408217 1409531 610 + . alignment_id 2 ; Query AmOr166JOI ; Align 1408217 199 213 ; Align 1408522 270 24 ; Align 1408549 278 87 ; Align 1409050 307 156 ; Align 1409484 359 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr166JOI Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 591 Query range: 198 -> 373 Target range: 1401021 -> 1402805 199 : ValLeuHisValGlyCysGlnIleAspIleMetCysGlnThrLeuMetLysThrTh : 217 |||||||||:!!||||||||||||||||||||||||!:!!.!|||:!: ! ..!:! ValLeuHisLeuGlyCysGlnIleAspIleMetCysArgAsnLeuLeuAspValSe 1401022 : GTACTTCATCTAGGATGTCAAATCGACATCATGTGCCGAAATTTGCTAGACGTTTC : 1401076 218 : rHisArgAspGlnLysLysLeuLysPhePheIleLysArgHisGlnGluIleIleL : 236 ! !!:!||| |||::::::||||||||||||.!.||||||||||||||||||: rPheLysAspGlyLysGlnIleLysPhePheIleAsnArgHisGlnGluIleIleV 1401077 : CTTCAAAGACggaaaacaaataaaattcttcattaACAGACATCAGGAAATTATTG : 1401133 237 : euLeuAlaGluLysIleGluLysPhePheThrTyrIleAlaLeuSerGlnLeuIle : 254 !!!!!||||||!:!|||||||||.!!|||||||||!!:|||||||||||||||:!: alPheAlaGluArgIleGluLysLeuPheThrTyrMetAlaLeuSerGlnLeuVal 1401134 : TTTTTGCAGAAAGAATTGAGAAACTTTTTACATACATGGCTCTCAGTCAACTTGTG : 1401187 255 : SerAsnThrLeuIleThrCysCysLeuGlyTyrLeuIleValIle >>>> Targ : 270 |||||||||:!!|||! !||||||:!!|||!:!|||:!!|||||| SerAsnThrIleIleIleCysCysValGlyPheLeuValValIle++ 1401188 : TCCAATACGATAATTATATGTTGCGTAGGATTTCTCGTTGTAATTgt......... : 1401237 271 : et Intron 1 >>>> ThrLeuHisLeuGlyAsnAsnIle<->IleLeuIleLy : 281 83 bp .!!:!!|||:!!! !|||...:!! :!:|||:!!|| ++AlaValHisIleAspAsnGlyValProLeuLeuLeuLy 1401238 : ................aggCAGTACATATCGACAATGGAGTTCCTCTGTTACTCAa : 1401354 282 : sTyrIleMetPheTyrValAlaValCysSerGluAlaPheIleTyrCysPheAlaG : 300 | ::::::|||||||||!.!:!!|||! !|||||||||||||||||||||!.!| sSerLeuLeuPheTyrValValIleCysLeuGluAlaPheIleTyrCysPheValG 1401355 : atctcttttattttatgtgGTTATTTGTTTAGAAGCGTTTATATACTGCTTTGTCG : 1401411 301 : lyGluTyrLeuSerIleLys >>>> Target Intron 2 >>>> SerLysL : 309 |||||||||||||||||||| 1004 bp |||:!!| lyGluTyrLeuSerIleLys++ ++SerGlnL 1401412 : GAGAATATCTCAGTATCAAGgt.........................agAGCCAAC : 1402442 310 : euIleAlaAspThrAlaTyrGluPheLeuTrpTyrAsnMetAsnProAsnGluSer : 327 |||||!.!:!!||||||||||||||||||||||||:!!:!:..! !!!.!|||||| euIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSer 1402443 : TAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAGC : 1402496 328 : ArgLeuLeuIleProIleIleLeuArgAlaGlnArgGlyPheThrPheThrPheGl : 346 !:!||||||||||||:!!|||||||||:!!|||!:!|||||||||||||||||||| GlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGl 1402497 : CAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACGTttacttttgg : 1402553 347 : yLysPheAlaThrLeuSerMetGluSerPheThrAla >>>> Target Intro : 359 |||||||::::::||||||:!!||||||||||||||| 169 bp yLysPheSerSerLeuSerLeuGluSerPheThrAla++ 1402554 : aaaattttcaagtctCTCCTTGGAAAGCTTTACGGCCgt................. : 1402594 360 : n 3 >>>> IleMetLysAlaSerGlySerTyrMetSerValLeuLeuAlaMet : 373 |||||||||!.!|||!.!||||||!!:|||||||||||||||:!! ++IleMetLysValSerAlaSerTyrIleSerValLeuLeuAlaVal 1402595 : ........agATCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTG : 1402805 vulgar: AmOr166JOI 198 373 . KQ414716.1 1401021 1402805 + 591 M 71 213 5 0 2 I 0 79 3 0 2 M 8 24 G 0 3 M 29 87 5 0 2 I 0 1000 3 0 2 M 52 156 5 0 2 I 0 165 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401022 1402805 591 + . gene_id 3 ; sequence AmOr166JOI ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401022 1401234 . + . KQ414716.1 exonerate:protein2genome:local exon 1401022 1401234 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401235 1401236 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401235 1401317 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1401316 1401317 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1401318 1401431 . + . KQ414716.1 exonerate:protein2genome:local exon 1401318 1401431 . + . insertions 3 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401432 1401433 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401432 1402435 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1402434 1402435 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402436 1402591 . + . KQ414716.1 exonerate:protein2genome:local exon 1402436 1402591 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1402592 1402593 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1402592 1402760 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1402759 1402760 . + . intron_id 2 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402761 1402805 . + . KQ414716.1 exonerate:protein2genome:local exon 1402761 1402805 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401022 1402805 591 + . alignment_id 3 ; Query AmOr166JOI ; Align 1401022 199 213 ; Align 1401318 270 24 ; Align 1401345 278 87 ; Align 1402436 307 156 ; Align 1402761 359 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr166JOI Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 252 Query range: 84 -> 199 Target range: 1398613 -> 1398958 85 : AsnThrLeuIleArgAsnIleLeuLeuSerMetGluGluGluCysGlnLysTyrAl : 103 :!!!:!:!!.!!!!!:!!||||||! !!!!|||||||||!!:|||||||||||||| HisSerValPheSerAspIleLeuSerThrMetGluGluAspCysGlnLysTyrAl 1398614 : CACAGCGTATTTAGTGACATTTTATCAACCATGGAAGAGGATTGTCAGAAATATGC : 1398668 104 : aIleMetAspThrAspAsnLeuIleSerLysThrAlaTyrLeuSerTyrArgLeuT : 122 | !!!:|||! !:!!!!.|||!!:|||||||||!.! ! ||||||::: |||| aAlaIleAspIleAsnLysLeuMetSerLysThrGlyGlnLeuSerPheTyrLeuT 1398669 : TGCTATAGATATAAATAAGTTGATGTCAAAAACCGGACAgctatctttttatttaa : 1398725 123 : hrSerThrIleIleCysThrCysValAlaSerThrValCysTyrAlaIleGlyIle : 140 |||||! !:!!!!:! ! !! !:!!||||||.!!!.!! !||| !! !..!! ! hrSerIleValMetSerLeuTyrMetAlaSerAlaAlaPheTyrIleThrAsnThr 1398726 : caagcATTGTTATGTCTTTGTATATGGCATCTGCAGCATTTTACATAACTAATACT : 1398779 141 : PheSerHisGlnGluValAsnValThrSerSerArgGluLeuLeuLeuLysMetAs : 159 .!!.!! !|||! ! !|||!.!:!! !|||||||||||||||:!!||||||:! IleGlyPheGlnGlyAsnAsnAlaSerValSerArgGluLeuLeuMetLysMetAs 1398780 : ATTGGATTTCAAGGAAATAATGCTTCAGTATCTCGGGAGCTCCTTATGAAAATGGA : 1398836 160 : nLeuProPheAspThrAsnLysSerProIleTyrGluPheValValIleIleGlnT : 178 !|||||||||!!:|||!:!:!!||||||! !||||||.!!||||||! !! !||| pLeuProPheGluThrSerGluSerProAsnTyrGluLeuValValThrThrGlnV 1398837 : TTTGCCTTTCGAGACCAGCGAATCGCCGAATTACGAACTTGTAGTAACTACACAGG : 1398893 179 : yrPheTyrGlnValSerAlaAlaPheValPheGlyValPheAlaAlaPheLeuLeu : 196 !.!! !!!.:!!|||!.!||| ! !.!!:!|||!.!||| !|||.!!|||||| alLeuIleHisLeuSerValAlaValAlaTyrGlyAlaPheAsnAlaLeuLeuLeu 1398894 : TCCTTATTCACTTATCAGTGGCCGTAGCATACGGTGCATTCAATGCTCTTCTCTTA : 1398947 197 : MetIleVal : 199 |||:!:||| MetValVal 1398948 : ATGGTGGTA : 1398958 vulgar: AmOr166JOI 84 199 . KQ414716.1 1398613 1398958 + 252 M 115 345 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1398614 1398958 252 + . gene_id 4 ; sequence AmOr166JOI ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1398614 1398958 . + . KQ414716.1 exonerate:protein2genome:local exon 1398614 1398958 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1398614 1398958 252 + . alignment_id 4 ; Query AmOr166JOI ; Align 1398614 85 345 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr166JOI Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 200 Query range: 224 -> 306 Target range: 1394257 -> 1394970 225 : LysPhePheIleLysArgHisGlnGluIleIleLeuLeuAlaGluLysIleGluLy : 243 |||! !!.||| ! ||||||!!...!||||||:!! !:!!!!:...||||||!. LysSerLeuIleHisArgHisHisArgIleIleIleAsnSerAspSerIleGluSe 1394258 : AAATCATTAATTCACAGACATCATCGAATCATTATTAATTCGGACTCTATCGAGAG : 1394312 244 : sPhePheThrTyrIleAlaLeuSerGlnLeuIleSerAsnThrLeuIleThrCysC : 262 ..!!|||:!!||||||||||||! !|||! !:!!!!!|||||||||:!!! !|||| rLeuPheSerTyrIleAlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysC 1394313 : TCTTTTTTCATACATTGCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTT : 1394369 263 : ysLeuGlyTyrLeuIleValIle >>>> Target Intron 1 >>>> ThrL : 271 ||:!!|||!:!|||||||||||| 464 bp .!!! ysIleGlyPheLeuIleValIle++ ++AlaP 1394370 : GCATAGGATTCTTAATAGTAATTgt.........................agGCAT : 1394860 272 : euHisLeuGlyAsnAsnIle<->IleLeuIleLysTyrIleMetPheTyrValAla : 288 !!:!! !! ...|||||| ...|||||| ::!:!:||||||:!!||| heAsnThrAspGlyAsnIleLysThrPheIleLysThrLeuLeuPheTyrIleAla 1394861 : TTAATACAGatggaaatataaaaacatttataaaaacattACTCTTTTACATCGCT : 1394914 289 : ValCysSerGluAlaPheIleTyrCysPheAlaGlyGluTyrLeuSerIleLys : 306 :!! !! !||||||||||||!:!! !|||||||||||||||||||||! !||| IleThrMetGluAlaPheIlePheSerPheAlaGlyGluTyrLeuSerAsnLys 1394915 : ATCACTATGGAAGCATTCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAA : 1394970 vulgar: AmOr166JOI 224 306 . KQ414716.1 1394257 1394970 + 200 M 45 135 5 0 2 I 0 460 3 0 2 M 8 24 G 0 3 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394258 1394970 200 + . gene_id 5 ; sequence AmOr166JOI ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394258 1394392 . + . KQ414716.1 exonerate:protein2genome:local exon 1394258 1394392 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394393 1394394 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394393 1394856 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394855 1394856 . + . intron_id 0 ; splice_site "aG" KQ414716.1 exonerate:protein2genome:local cds 1394857 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394857 1394970 . + . insertions 3 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394258 1394970 200 + . alignment_id 5 ; Query AmOr166JOI ; Align 1394258 225 135 ; Align 1394857 270 24 ; Align 1394884 278 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr166JOI Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 306 -> 373 Target range: 1387619 -> 1387955 307 : SerLysLeuIleAlaAspThrAlaTyrGluPheLeuTrpTyrAsnMetAsnProAs : 325 |||:!!! !|||.!!.!.:!:...|||...||||||||||||:!!:!:!!.|||.. SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 326 : nGluSerArgLeuLeuIleProIleIleLeuArgAlaGlnArgGlyPheThrPheT : 344 .|||:!!|||::::::::: ||||||||||||:!!|||!:!! !!!.! !.!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 345 : hrPheGlyLysPheAlaThrLeuSerMetGluSerPheThrAla >>>> Targe : 359 || |||||||||!.!!.!||||||:!!! :!!|||.!! hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt.......... : 1387778 360 : t Intron 1 >>>> IleMetLysAlaSerGlySerTyrMetSerValLeuLeu : 371 135 bp ::::!:|||||||||!.!||||||:!:|||||||||! ! ++MetLeuLysAlaSerAlaSerTyrValSerValLeuHis 1387779 : ...............agatgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTTGCAT : 1387947 372 : AlaMet : 373 |||||| AlaMet 1387948 : GCAATG : 1387955 vulgar: AmOr166JOI 306 373 . KQ414716.1 1387619 1387955 + 152 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387955 152 + . gene_id 6 ; sequence AmOr166JOI ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387955 152 + . alignment_id 6 ; Query AmOr166JOI ; Align 1387620 307 156 ; Align 1387911 359 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr166JOI Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 223 -> 268 Target range: 1387203 -> 1387338 224 : LeuLysPhePheIleLysArgHisGlnGluIleIleLeuLeuAlaGluLysIleGl : 242 :!!||| ! !!:!! |||||||||..!||||||! !|||:!!:!!!!.||||| IleLysAspValValValArgHisGlnArgIleIleArgLeuSerLysAsnIleGl 1387204 : ATAAAGGATGTCGTTGTTAGGCATCAACGAATTATACGACTGTCTAAAAATATCGA : 1387258 243 : uLysPhePheThrTyrIleAlaLeuSerGlnLeuIleSerAsnThrLeuIleThrC : 261 |! ! !!||||||||||||:!!|||! |||...:::|||||| |||:!!! !| uThrValPheThrTyrIleSerLeuCysGlnPheLeuSerAsnMetLeuValIleC 1387259 : GACAGTTTTTACTTATATATCATTATgccaatttttatcgaatatgcTGGTTATCT : 1387315 262 : ysCysLeuGlyTyrLeuIleVal : 268 ||! !:!!.!!!:!:!!:!:||| ysPheIleSerPheValLeuVal 1387316 : GTTTCATAAGCTTCGTTTTGGTA : 1387338 vulgar: AmOr166JOI 223 268 . KQ414716.1 1387203 1387338 + 108 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387204 1387338 108 + . gene_id 7 ; sequence AmOr166JOI ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387204 1387338 . + . KQ414716.1 exonerate:protein2genome:local exon 1387204 1387338 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387204 1387338 108 + . alignment_id 7 ; Query AmOr166JOI ; Align 1387204 224 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr172JOI Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 126 -> 218 Target range: 14160 -> 13884 127 : ValIleIleIleValProLeuGlnLeuValPhePheLeuAsnValPheGlyAsnAsnIle : 146 :!!:!:! ! :!! !! ! :!!:!!||| ! !!.. ! ! ! :!!||| IleValAsnAlaIleValCysValIleLeuPheValThrThrProValThrProHisIle 14160 : ATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATT : 14103 147 : LeuAspIleLeuIleProLeuAsnHisThrArgProArgThrValProIleGluIleTyr : 166 ||||||||||||:!!||| !|||.!.:!!||| ! !.!! ! ! ! ! !||| LeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyr 14102 : TTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTAT : 14043 167 : TyrPheIleAspGlnGlnLysPhePhePhePhePheGlyMetHisLeuAsnIleIleThr : 186 ||||||! !|||:!!!!.|||!:! ! ! !:!.!. !! !|||:!! !:!:! ! TyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIle 14042 : TATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATC : 13983 187 : SerPheGlyGlyLeuValTyrIleAlaIleGluThrIleSerMetGlyMetIleGlnHis : 206 ! ! ! ! !! !||||||:!!||| !!!:|||! !! !!!: !:!::!:|||||| LeuValValPheTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHis 13982 : CTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACAC : 13923 207 : LeuCysGlyLeuLeuLysIleThrSerPheArgIle : 218 !|||||||||||| :!::!!.!. :::||| GlyCysGlyLeuLeuAlaValSerGly***LysIle 13922 : GGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaatt : 13885 vulgar: AmOr172JOI 126 218 . KQ414772.1 14160 13884 - 117 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13885 14160 117 - . gene_id 1 ; sequence AmOr172JOI ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13885 14160 . - . KQ414772.1 exonerate:protein2genome:local exon 13885 14160 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13885 14160 117 - . alignment_id 1 ; Query AmOr172JOI ; Align 14161 127 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr169 Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 786 Query range: 1 -> 265 Target range: 57438 -> 58233 2 : LysMetAsnPheGlnAsnLeuAsnArgLeuAsnThrPheValAsnAlaValSerGlyAsn : 21 ||||||:!!||||||!:!|||!:!!:!||||||! !.!!:!!||| ! !||||||||| LysMetAspPheGlnSerLeuSerGlnLeuAsnMetLeuIleAsnLysTyrSerGlyAsn 57439 : AAAATGGATTTTCAAAGCTTGAGTCAGCTAAATATGCTTATAAACAAGTATTCGGGGAAT : 57496 22 : IleLeuProIleThrAspMetLysLysArgLeuSerIleValLeuLysIleTyrSerIle : 41 !||||||!!:||||||! !|||! !!:!||| !! !:!!||||||! !||||||||| GlnLeuProMetThrAspLysLysThrLysLeuProTyrIleLeuLysSerTyrSerIle 57497 : CAACTACCGATGACGGATAAGAAAACGAAATTACCGTATATTTTAAAGAGCTATTCGATT : 57556 42 : LeuValTrpThrIleGluLeuSerTyrLeuAlaAlaCysIleLeuGlyLeuPheAsnVal : 61 :!! !||| !|||:!!|||!!!||||||.!!!.!|||:!!!!!||||||||||||||| MetSerTrpLeuIleGlnLeuThrTyrLeuThrValCysValPheGlyLeuPheAsnVal 57557 : ATGTCTTGGCTGATACAGCTAACATACCTGACTGTCTGCGTTTTTGGTCTTTTCAACGTA : 57616 62 : SerArgGluArgAlaLeuLysAspSerThrValAsnIleValIleSerLeuGluValPhe : 81 !!|||!!:!:!||||||||||||.!!|||||||||||||||:!!:!!||||||! !.!! ProArgAspLysAlaLeuLysAspGlyThrValAsnIleValValAlaLeuGluGluIle 57617 : CCCAGAGATAAAGCATTGAAGGACGGCACGGTAAATATAGTGGTTGCTTTAGAAGAAATT : 57676 82 : ValLeuIleValTyrLeuHisAsnArgGluAsnLeuLeuArgGluLeuIleGlyLysLeu : 101 ||||||:!!:!!|||||||||||||||:!!!.!|||:!!|||..!|||||||||:!!||| ValLeuValIleTyrLeuHisAsnArgLysThrLeuValArgArgLeuIleGlyGluLeu 57677 : GTGCTGGTTATTTATTTGCACAACCGTAAAACTTTGGTACGAAGGTTAATTGGAGAACTG : 57736 102 : AsnCysLeuLeuIleValAspAspGluThrLeuArgAspValThrIleGlyThrValLys : 121 ||| !!:!!||| ||||||:!!|||! !||||||:!!|||||||||..!||||||||| AsnArgValLeuAlaValAspAsnGluMetLeuArgAsnValThrIleAsnThrValLys 57737 : AATCGTGTTCTCGCGGTAGATAACGAGATGCTACGAAATGTCACGATTAATACCGTGAAA : 57796 122 : ProLeuGluLysProLeuArgValTyrIleIleAlaSerValGlySerLeuMetIleTrp : 141 !!|||||||||||||||::::::||| ||||||||||||..!:!!:!!|||:!!||| SerLeuGluLysProLeuLysIleTyrThrIleAlaSerValAsnAlaValMetLeuTrp 57797 : TCCTTAGAGAAAcccttgaaaatttatacgatTGCCAGTGTTAATGCAGTTATGCTTTGG : 57856 142 : AlaSerLeuProLeuAlaLysIlePheArgLysSerGluPheTyrTyrThrAspTyrGln : 161 .!!:!!|||||||||!.!:!!:!!||||||!:!||||||||||||||||||||||||... ThrAlaLeuProLeuValGlnValPheArgArgSerGluPheTyrTyrThrAspTyrSer 57857 : ACAGCTTTGCCACTCGTCCAAGTATTTCGGAGATCTGAGTTCTATTATACGGATTATAGT : 57916 162 : ValProAlaValIleSerAsnGluProPheProIleGlyValPheIleGlyGlyValAla : 181 |||||||||!.!:!!|||!!.:!!|||||| !! !! !||||||:!!|||||||||!.! ValProAlaAlaLeuSerLysGlnProPheSerTyrAspValPheValGlyGlyValVal 57917 : GTGCCAGCTGCTCTATCTAAGCAACCGTTTTCATACGACGTTTTCGTCGGCGGCGTTGTT : 57976 182 : LeuGlnIlePheGlySerAlaTyrThrLeuLeuArgLysValSerLeuAspLeuTyrThr : 201 |||||||||.!!|||.!!!.!||||||:::::::::|||:::...:!!|||:!!|||||| LeuGlnIleIleGlyGlyValTyrThrValMetLysLysIleGlyValAspIleTyrThr 57977 : CTTCAGATTATTGGTGGTGTATACAccgtaatgaaaaaaattggcgTGGATATTTATACG : 58036 202 : MetHisLeuIleLeuLeuIleThrAlaGlnTyrLysTyrLeuArgIleLysPheAlaAla : 221 ||||||||||||||||||!!:||||||||||||||||||:!!||| !||| !!||| ! MetHisLeuIleLeuLeuMetThrAlaGlnTyrLysTyrIleArgGlyLysValAlaMet 58037 : ATGCATTTGATTCTTTTAATGACGGCGCAGTACAAATATATTAGGGGCAAAGTTGCGATG : 58096 222 : IleLeuGluGlnGluThrProLys<->AspPhePheTyrGlyGlyIleIleTrpGlnAsn : 240 ! !!!!..!||| ! !.! ! ||| !||| !..!.!!|||! ! ! ! !!!. ThrPheArgGlnTyrAsnGluAlaPheAspAspPheGlyAsnSerIleThrGlyLeuLys 58097 : ACATTTCGACAGTATAACGAAGCTTTCGATGATTTCGGCAACAGTATTACTGGACTGAAA : 58156 241 : ValProCysGluTyrAspLysMetValLysGlnGluMetLysLeuLeuThrArgHisPhe : 260 ||| !!|||||| ! .!.|||:!!:!!||||||||||||!:!! ! !:!!!.!|||!:! ValSerCysGluLysGlnLysValIleLysGlnGluMetArgSerAlaSerHisHisTyr 58157 : GTTTCATGCGAGAAGCAAAAAGTGATCAAACAGGAAATGAGATCGGCGTCTCATCATTAC : 58216 261 : GluIleValValGlu : 265 |||:!!:!!|||:!! GluValIleValLys 58217 : GAAGTTATAGTCAAG : 58233 vulgar: AmOr169 1 265 . KQ414777.1 57438 58233 + 786 M 228 684 G 0 3 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 57439 58233 786 + . gene_id 1 ; sequence AmOr169 ; gene_orientation . KQ414777.1 exonerate:protein2genome:local cds 57439 58233 . + . KQ414777.1 exonerate:protein2genome:local exon 57439 58233 . + . insertions 3 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 57439 58233 786 + . alignment_id 1 ; Query AmOr169 ; Align 57439 2 684 ; Align 58126 230 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr169 Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 503 Query range: 264 -> 401 Target range: 61693 -> 63128 265 : GluMetThrValMetLeuLysLysLeuLeuSerProAsnIleGlyIleLeuTyrIleAsn : 284 ...||||||:!!||||||||||||||||||||||||||||||||||||||||||:!!||| ArgMetThrIleMetLeuLysLysLeuLeuSerProAsnIleGlyIleLeuTyrValAsn 61694 : aggaTGACTATTATGTTGAAGAAATTACTATCTCCAAACATTGGAATACTTTACGTAAAC : 61751 285 : TyrValPheArgPheCysPheLeuSerPheMetLeuAlaThr >>>> Target Intr : 299 !!||||||||||||||||||||||||!!.|||:!! !||| 80 bp AsnValPheArgPheCysPheLeuSerLeuMetIleIleThr++ 61752 : AACGTTTTCCGGTTCTGCTTTCTAAGTTTAATGATTATAACGgt................ : 61798 300 : on 1 >>>> SerSerGlyMetHisPheGluLysCysLeuLeuValSerTyrThrIleG : 315 :::|||||| :::||||||||| ::::::|||! !|||||||||| ++AsnSerGlyAspAsnPheGluLysLeuIleIleValMetTyrThrIleG 61799 : .........agaattccggagataattttgaaaaattgataattgtaATGTATACAATTG : 61924 316 : lyAlaLeuIleGlnPheTyrIleLeuCysTyrCysIleGlnGlnLeuLeuGluAla >> : 334 ||||||||! |||||||||:!!||||||!:!|||||||||:!!|||:!!|||||| lyAlaLeuThrGlnPheTyrValLeuCysPheCysIleGlnGluLeuValGluAla++ 61925 : GTGCTCTAACGCAATTTTATGTATTGTGCTTCTGTATTCAAGAGTTAGTCGAAGCGgt.. : 61983 335 : >> Target Intron 2 >>>> SerThrThrValAlaAspAspValValHisGluLy : 345 120 bp ||||||:!!||||||||||||||||||||||||:: ++SerThrSerValAlaAspAspValValHisGluAr 61984 : .......................agAGCACATCTGTAGCGGACGATGTAGTACATGAACG : 62134 346 : sTrpTyrLeuHisAspValLysPheGlnHisIleIleLeuMetIleThrLeuAlaAsnLy : 365 !||||||!!! !|||||| ! ! |||!..:!!||| !||||||! !||||||:!!|| gTrpTyrPheCysAspValLeuValGlnArgValIleAlaMetIleIleLeuAlaAspLy 62135 : ATGGTATTTCTGTGATGTACTAGTACAACGAGTAATTGCTATGATTATTTTAGCTGATAA : 62194 366 : sLeuLysCysLysLeuSerSerPheArgAsnIleAspLeuThrLeuProSerPheMetSe : 385 |:!!:!!|||!:!||||||||||||||||||||||||||||||||||||||||||||||| sMetGluCysArgLeuSerSerPheArgAsnIleAspLeuThrLeuProSerPheMetSe 62195 : AATGGAATGTAGACTGTCCAGTTTTCGGAACATAGATTTAACTTTACCATCTTTTATGTC : 62254 386 : r >>>> Target Intron 3 >>>> IleLeuAsnGlnAlaTyrSerValCysLeu : 395 | 824 bp |||||||||||||||||||||..! !!||| r++ ++IleLeuAsnGlnAlaTyrSerThrSerLeu 62255 : Ggt.........................agATTCTAAACCAAGCATACTCGACTAGTTTG : 63108 396 : LeuPheLeuLysAlaArg : 401 |||||||||||||||!:! LeuPheLeuLysAlaLys 63109 : CTGTTTTTGAAAGCAAAA : 63128 vulgar: AmOr169 264 401 . KQ414777.1 61693 63128 + 503 M 34 102 5 0 2 I 0 76 3 0 2 M 35 105 5 0 2 I 0 116 3 0 2 M 52 156 5 0 2 I 0 820 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 61694 63128 503 + . gene_id 2 ; sequence AmOr169 ; gene_orientation + KQ414777.1 exonerate:protein2genome:local cds 61694 61795 . + . KQ414777.1 exonerate:protein2genome:local exon 61694 61795 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local splice5 61796 61797 . + . intron_id 1 ; splice_site "GT" KQ414777.1 exonerate:protein2genome:local intron 61796 61875 . + . intron_id 1 KQ414777.1 exonerate:protein2genome:local splice3 61874 61875 . + . intron_id 0 ; splice_site "ag" KQ414777.1 exonerate:protein2genome:local cds 61876 61980 . + . KQ414777.1 exonerate:protein2genome:local exon 61876 61980 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local splice5 61981 61982 . + . intron_id 2 ; splice_site "GT" KQ414777.1 exonerate:protein2genome:local intron 61981 62100 . + . intron_id 2 KQ414777.1 exonerate:protein2genome:local splice3 62099 62100 . + . intron_id 1 ; splice_site "AG" KQ414777.1 exonerate:protein2genome:local cds 62101 62256 . + . KQ414777.1 exonerate:protein2genome:local exon 62101 62256 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local splice5 62257 62258 . + . intron_id 3 ; splice_site "GT" KQ414777.1 exonerate:protein2genome:local intron 62257 63080 . + . intron_id 3 KQ414777.1 exonerate:protein2genome:local splice3 63079 63080 . + . intron_id 2 ; splice_site "AG" KQ414777.1 exonerate:protein2genome:local cds 63081 63128 . + . KQ414777.1 exonerate:protein2genome:local exon 63081 63128 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 61694 63128 503 + . alignment_id 2 ; Query AmOr169 ; Align 61694 265 102 ; Align 61876 299 105 ; Align 62101 334 156 ; Align 63081 386 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr160 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 996 Query range: 155 -> 390 Target range: 1344651 -> 1345846 156 : SerLysTyrAsnAsnCysThrLeuProPheGluLeuProMetLysValAsnAsnVa : 174 !!!:!!!:!!:!|||||||||||||||!:!|||||||||||||||||||||:!!:! ThrGluPheSerAsnCysThrLeuProTyrGluLeuProMetLysValAsnHisLe 1344652 : ACAGAGTTCAGTAACTGTACTCTTCCTTACGAGCTACCAATGAAAGTGAACCACCT : 1344706 175 : lTyrGluIleThrLysLeuGlnThrTyrAlaLeuPheCysValTyrLeuIleProT : 193 !||||||:!:|||:!!:!!!:!||||||||||||||||||||||||!!!:!!|||| uTyrGluValThrGluValArgThrTyrAlaLeuPheCysValTyrPheValProT 1344707 : GTACGAAGTGACAGAGGTGCGGACGTACGCTTTGTTCTGCGTTTACTTCGTACCGA : 1344763 194 : hrSerThrLeuLeuThrIleGlyAlaThrGlyAlaAspSerLeuLeuValThrLeu : 211 |||||! !|||||||||||||||||||||||||||||||||||||||||||||||| hrSerMetLeuLeuThrIleGlyAlaThrGlyAlaAspSerLeuLeuValThrLeu 1344764 : CGAGCATGTTACTAACAATCGGTGCAACTGGCGCCGACAGTCTTCTAGTCACCTTG : 1344817 212 : ThrPheHisLeuCysSerGlnLeuSerIleValAlaTyrArgMetArgAsnValAs : 230 |||||||||||||||||||||!!!||||||:::::: |||::::::|||:!!:! ThrPheHisLeuCysSerGlnPheSerIleLeuSerSerArgValLysAsnIleAs 1344818 : ACTTTCCATCTTTGCAGTCAATTTTCGATcctgtcgagccgtgtaaaaAATATCGA : 1344874 231 : nIleGluProLysIleTyrPheProLysMetLysAlaLeuValGluArgHisThrG : 249 !:!!||||||:!!! |||||||||:!!|||||||||||||||||||||||||||| pValGluProGlnLysTyrPheProGlnMetLysAlaLeuValGluArgHisThrG 1344875 : CGTCGAGCCGCAAAAGTATTTCCCACAAATGAAAGCACTCGTTGAACGGCACACCG : 1344931 250 : luLeuLeu{Ar} >>>> Target Intron 1 >>>> {g}LeuAlaAsnIle : 256 ||||||||{||} 139 bp {|}||||||..!||| luLeuLeu{Ar}++ ++{g}LeuAlaGlyIle 1344932 : AACTTCTA{CG}gt.........................ag{A}TTGGCGGGCATT : 1345091 257 : LeuAlaAsnThrPheSerSerLeuMetPheValGlnThrLeuGlyLeuIlePheSe : 275 ||||||.!.|||||||||!!!|||||||||:!!||||||||||||||||||||||| LeuAlaGluThrPheSerThrLeuMetPheIleGlnThrLeuGlyLeuIlePheSe 1345092 : TTGGCAGAGACGTTTAGTACTCTGATGTTTATACAAACTTTAGGgttgatattttc : 1345148 276 : rLeuCysIleValValTyrGlnLeuLeuMet >>>> Target Intron 2 >> : 286 ||||||||||||||||!:!|||||||||! ! 133 bp rLeuCysIleValValPheGlnLeuLeuThr++ 1345149 : tttatgCATCGTCGTCTTTCAATTACTCACGgt....................... : 1345183 287 : >> ThrSerGluSerGlyGluAspMetAsnThrIleHisPheIleIleTyrSerC : 303 ! !||||||||||||||||||||||||||||||||||||||||||||||||| ++MetSerGluSerGlyGluAspMetAsnThrIleHisPheIleIleTyrSerC 1345184 : ..agATGAGCGAATCGGGCGAAGACATGAACACGATACACTTTATAATTTATTCCT : 1345365 304 : ysAlaValIleLeuLeuAlaPheCysTyrCysPheLeuGlyGluCysLeuIleAsn : 321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ysAlaValIleLeuLeuAlaPheCysTyrCysPheLeuGlyGluCysLeuIleAsn 1345366 : GCGCCGTTATATTACTAGCATTCTGCTATTGTTTCTTGGGAGAGTGCCTGATTAAC : 1345419 322 : Glu >>>> Target Intron 3 >>>> SerSerGluValGlnMetAlaCys : 330 ||| 140 bp |||||||||:!!|||..!|||||| Glu++ ++SerSerGluMetGlnGlnAlaCys 1345420 : GAGgt.........................agAGTTCTGAAATGCAGCAGGCTTGT : 1345586 331 : TyrPheThrAsnTrpTyrAspLeuProGluGlnTyrThrArgSerLeuIlePheCy : 349 ||||||!:!||||||||||||||||||!!::!!||||||||||||||||||||||| TyrPheSerAsnTrpTyrAspLeuProAspLysTyrThrArgSerLeuIlePheCy 1345587 : TACTTCAGTAATTGGTACGATTTACCAGATAAATACACGCGATCGTTAATATTTTG : 1345643 350 : sIleAlaArgAlaGlnLysProLeuTyrLeuThrAlaGlyLysPheTyrValPheS : 368 ||||||||||:!!|||||||||! !||||||||||||||||||||||||||||||| sIleAlaArgSerGlnLysProSerTyrLeuThrAlaGlyLysPheTyrValPheS 1345644 : CATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAGCTGGCAAGTTCTACGTGTTCT : 1345700 369 : erLeuGluThrPheAlaVal >>>> Target Intron 4 >>>> IleValL : 377 ||||||||||||||!.!:!! 78 bp ||||||| erLeuGluThrPheGlyIle++ ++IleValL 1345701 : CGTTAGAAACATTCGGCATCgt.........................agATAGTAA : 1345805 378 : ysAlaSerMetAlaTyrLeuSerValLeuLysSerIleIle : 390 ||||||||||||||||||||||||||||||||||||||||| ysAlaSerMetAlaTyrLeuSerValLeuLysSerIleIle 1345806 : AAGCGTCGATGGCCTATCTTTCCGTTCTGAAAAGCATTATC : 1345846 vulgar: AmOr160 155 390 . KQ414782.1 1344651 1345846 + 996 M 96 288 S 0 2 5 0 2 I 0 135 3 0 2 S 1 1 M 33 99 5 0 2 I 0 129 3 0 2 M 37 111 5 0 2 I 0 136 3 0 2 M 52 156 5 0 2 I 0 74 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1344652 1345846 996 + . gene_id 1 ; sequence AmOr160 ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1344652 1344941 . + . KQ414782.1 exonerate:protein2genome:local exon 1344652 1344941 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1344942 1344943 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1344942 1345080 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345079 1345080 . + . intron_id 0 ; splice_site "AG" KQ414782.1 exonerate:protein2genome:local cds 1345081 1345180 . + . KQ414782.1 exonerate:protein2genome:local exon 1345081 1345180 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345181 1345182 . + . intron_id 2 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345181 1345313 . + . intron_id 2 KQ414782.1 exonerate:protein2genome:local splice3 1345312 1345313 . + . intron_id 1 ; splice_site "AG" KQ414782.1 exonerate:protein2genome:local cds 1345314 1345424 . + . KQ414782.1 exonerate:protein2genome:local exon 1345314 1345424 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345425 1345426 . + . intron_id 3 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345425 1345564 . + . intron_id 3 KQ414782.1 exonerate:protein2genome:local splice3 1345563 1345564 . + . intron_id 2 ; splice_site "AG" KQ414782.1 exonerate:protein2genome:local cds 1345565 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 4 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 4 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 3 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345846 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345846 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1344652 1345846 996 + . alignment_id 1 ; Query AmOr160 ; Align 1344652 156 288 ; Align 1345082 253 99 ; Align 1345314 286 111 ; Align 1345565 323 156 ; Align 1345799 375 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr160 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 704 Query range: 0 -> 156 Target range: 1342061 -> 1342529 1 : MetArgArgProIleSerSerTyrValGluLeuPheTyrAspLysAsnValIleSe : 19 ||||||||| !!:!!|||! ! !!||||||||||||||||||:!!||||||:!!|| MetArgArgSerValSerLeuAsnValGluLeuPheTyrAspGluAsnValLeuSe 1342062 : ATGAGGAGGTCGGTATCGTTGAACGTGGAACTGTTCTACGACGAGAACGTGCTATC : 1342116 20 : rTrpSerLysArgLeuLeuGlyLeuSerGlyLeuTrpProAspAsnArgAsnAspV : 38 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| rTrpSerLysArgLeuLeuGlyLeuSerGlyLeuTrpProAspAsnArgAsnAspV 1342117 : GTGGAGCAAACGTCTCCTCGGCTTATCCGGCCTGTGGCCGGATAATCGCAACGAcg : 1342173 39 : alArgPhePheLeuTyrIleThrTyrValValIlePheThrTrpLeuGluIleVal : 56 |||||||||||...||||||!:!|||||||||||||||||||||||||||!!:||| alArgPhePhePheTyrIleSerTyrValValIlePheThrTrpLeuGluMetVal 1342174 : tacgatttttcttctacATTAGCTACGTGGTGATCTTCACGTGGCTGGAGATGGTG : 1342227 57 : ThrLeuValGlnAsnIleHisAspLeuGluLysThrLeuLysAsnIleThrLeuSe : 75 ||||||:!!||||||||||||||||||||||||:::|||||||||||||||||||| ThrLeuLeuGlnAsnIleHisAspLeuGluLysSerLeuLysAsnIleThrLeuSe 1342228 : ACGCTGCTGCAGAATATACACGACCTTGAGaagtcgttgaaaaatatcacgCTATC : 1342284 76 : rPheProThrIleLeuIleValLeuLysAlaValMetPheArgMetAsnMetHisL : 94 |||||||||||||||||||||||||||||||||||||||||||:!!|||||||||| rPheProThrIleLeuIleValLeuLysAlaValMetPheArgLeuAsnMetHisL 1342285 : GTTCCCGACCATCTTGATAGTGCTGAAGGCCGTGATGTTTCGGCTGAACATGCATC : 1342341 95 : euValLeuProLeuLeuThrValValLysArgAspValAsnGluGlyLeuTyrArg : 112 ||||||||||||||||| !!.!|||!:!!:!||||||!!.:!!|||||||||||| euValLeuProLeuLeuGluAlaValArgLysAspValLysGlnGlyLeuTyrArg 1342342 : TCGTCCTGCCGTTGCTCGAGGCAGTGAGAAAGGACGTGAAACAGGGACTGTATCGG : 1342395 113 : SerAlaGluGluArgArgThrValValTrpTyrAsnValAlaAlaThrLeuPheSe : 131 ||| !|||||||||||||||||||||||||||!:!|||||||||||||||||||| SerGlnGluGluArgArgThrValValTrpTyrSerValAlaAlaThrLeuPheSe 1342396 : TCGCAGGAGGAAAGGCGAACGGTTGTATGGTACAGCGTGGCCGCCACCTTATTTTC : 1342452 132 : rThrSerSerAlaLeuSerLeuPhePheValProThrLeuPheTyrAlaLysProI : 150 |||||||||||||:!!||||||||||||||||||||||||||||||.!!||||||| rThrSerSerAlaMetSerLeuPhePheValProThrLeuPheTyrThrLysProI 1342453 : CACGTCGTCGGCCATGTCTTTGTTCTTCGTGCCCACGTTATTTTATACGAAGCCGA : 1342509 151 : leIleGlyCysLeuLeuSer : 156 ||:!!||||||||||||||| leValGlyCysLeuLeuSer 1342510 : TCGTCGGCTGTCTGTTGTCG : 1342529 vulgar: AmOr160 0 156 . KQ414782.1 1342061 1342529 + 704 M 156 468 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1342062 1342529 704 + . gene_id 2 ; sequence AmOr160 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1342062 1342529 . + . KQ414782.1 exonerate:protein2genome:local exon 1342062 1342529 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1342062 1342529 704 + . alignment_id 2 ; Query AmOr160 ; Align 1342062 1 468 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr164FIX Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 315 -> 365 Target range: 1345564 -> 1345714 316 : SerGluAsnIleSerTrpIleAlaTyrAsnSerAsnTrpTyrGluLeuSerIleTy : 334 |||....!.!!:..! ! !..!||| !||||||||||||!!:||| !! ! ! SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 335 : rGluIleArgValLeuLeuLeuLeuIleMetArgSerGlnLysProLeuThrLeuT : 353 ! ! ||| !|||:!!!!!! !||| |||||||||||||||! ! !|||| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 354 : hrIleGlyLysTyrMetLysLeuSerLeuGluThrPhe : 365 || !||||||!:! !!!!||||||||||||||| hrAlaGlyLysPheTyrValPheSerLeuGluThrPhe 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTC : 1345714 vulgar: AmOr164FIX 315 365 . KQ414782.1 1345564 1345714 + 107 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345714 107 + . gene_id 1 ; sequence AmOr164FIX ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345714 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345714 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345714 107 + . alignment_id 1 ; Query AmOr164FIX ; Align 1345565 316 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr172JOI Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 135 -> 213 Target range: 26228 -> 25994 136 : ValPhePheLeuAsnValPheGlyAsnAsnIleLeuAspIleLeuIleProLeuAsnHis : 155 :!!|||.!.! ! !|||! !::: |||||||||||||||!!:|||||||||.!. LeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGlu 26228 : CTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAG : 26171 156 : ThrArgProArgThrValProIleGluIleTyrTyrPheIleAspGlnGlnLysPhePhe : 175 |||||| !!||| ! !! ! ! ! !|||||||||:!!|||:!!.!.|||!:! ! ThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHis 26170 : ACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCAT : 26111 176 : PhePhePheGlyMetHisLeuAsnIleIleThrSerPheGlyGlyLeuValTyrIleAla : 195 !:!!!..!!! ! !|||:!! !!:!!:!!..! !.!. ! !! !|||!:! !||| TyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 26110 : TACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 26051 196 : IleGluThrIleSerMetGlyMetIleGlnHisLeuCysGlyLeuLeuLysIle : 213 !!!:.!!! !! !:!! ! :!:|||||| !|||||||||||| ||| CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 26050 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 25995 vulgar: AmOr172JOI 135 213 . LHQN01017803.1 26228 25994 - 130 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25995 26228 130 - . gene_id 1 ; sequence AmOr172JOI ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25995 26228 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25995 26228 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25995 26228 130 - . alignment_id 1 ; Query AmOr172JOI ; Align 26229 136 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr172JOI Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 144 -> 218 Target range: 14143 -> 13921 145 : AsnIleLeuAspIleLeuIleProLeuAsnHisThrArgProArgThrValProIleGlu : 164 :!!|||||||||||||||:!!||| !|||.!.:!!||| ! !.!! ! ! ! ! HisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrPro 14143 : CATATTTTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTATCCG : 14086 165 : IleTyrTyrPheIleAspGlnGlnLysPhePhePhePhePheGlyMetHisLeuAsnIle : 184 !|||||||||! !|||:!!!!.|||!:! ! ! !:!.!. !! !|||:!! ! AlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSer 14085 : GCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCC : 14026 185 : IleThrSerPheGlyGlyLeuValTyrIleAlaIleGluThrIleSerMetGlyMetIle : 204 :!:! ! ! ! ! ! !! !||||||:!!||| !!!:|||! !! !!!: !:!::!: ValIleLeuValValPheTyrValTyrValAlaCysAspThrSerTyrIleTyrValVal 14025 : GTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTG : 13966 205 : GlnHisLeuCysGlyLeuLeuLysIleThrSerPheArgIle : 218 |||||| !|||||||||||| :!::!!.!. :::||| GlnHisGlyCysGlyLeuLeuAlaValSerGly***LysIle 13965 : CAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaatt : 13922 vulgar: AmOr172JOI 144 218 . LHQN01017803.1 14143 13921 - 117 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13922 14143 117 - . gene_id 2 ; sequence AmOr172JOI ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13922 14143 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13922 14143 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13922 14143 117 - . alignment_id 2 ; Query AmOr172JOI ; Align 14144 145 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr167JOI Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 300 -> 384 Target range: 51840 -> 52349 301 : ThrLeuGluAlaPheIlePheSerIleAlaGlyGluTyrLeuSerAsnLysSerLeuSer : 320 !.!:!!.!..!!|||||| ||| ::::::...::: ::!|||:!!..! AsnValAsnThrPheIleAlaSerCysHis***LysPhePheThrPheGlnSerValGlu 51841 : AATGTTAATACTTTTATTGCAAGTTgtcattaaaaattcttcacttttcaGAGCGTTGAA : 51898 321 : ValSerIleSerAlaTyrGluSerProTrpTyrLeuLeuSerProLysAsnArgGlyVal : 340 :!!:!!! !:!!||||||!!:||| !|||||| !||||||||||||||| ! !:!! IleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLysAsnAlaLysLeu 51899 : ATAGCTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTG : 51958 341 : MetIleLeuLeuMetValArgSerGlnArgArgLeuThrIleThrAlaGlyLysPheMet : 360 :!::!!:!!:!!||| !|||:!!::! !! !||| !||||||||||||!:!||| LeuLeuIleIleMetArgArgAlaArgLeuProLeuGlnIleThrAlaGlyArgPheAla 51959 : CTACTAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCAGGTAGATTTGCT : 52018 361 : AspLeuSerMetGlnGlyPheAlaAsn >>>> Target Intron 1 >>>> ValL : 371 !!!!!!!:!!..! !!:!:!!.!. 251 bp :!!| ThrPheThrLeuMetLeuTyrSerGln++ ++IleL 52019 : ACTTTCACTCTGATGCTGTATTCACAGgt.........................agATTT : 52302 372 : euLysAlaSerVal<-><->SerTyrValSerIleLeuTyrAlaMet : 384 |||||.!!|||||| .!!|||||||||:!!|||||||||||| euLysThrSerValGlyLysGlyTyrValSerValLeuTyrAlaMet 52303 : TAAAAACCTCGGTGGGAAAAGGTTATGTTTCTGTTCTATACGCAATG : 52349 vulgar: AmOr167JOI 300 384 . KQ414804.1 51840 52349 + 144 M 69 207 5 0 2 I 0 247 3 0 2 M 6 18 G 0 6 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51841 52349 144 + . gene_id 1 ; sequence AmOr167JOI ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51841 52047 . + . KQ414804.1 exonerate:protein2genome:local exon 51841 52047 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 52048 52049 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 52048 52298 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 52297 52298 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 52299 52349 . + . KQ414804.1 exonerate:protein2genome:local exon 52299 52349 . + . insertions 6 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51841 52349 144 + . alignment_id 1 ; Query AmOr167JOI ; Align 51841 301 207 ; Align 52299 370 18 ; Align 52323 376 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr167JOI Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 316 -> 377 Target range: 34381 -> 34564 317 : LysSerLeuSerValSerIleSerAlaTyrGluSerProTrpTyrLeuLeuSerProLys : 336 :!!||| !..!:!!|||! !||||||||||||||| !|||||| !:!!|||||| ! GlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProPro 34382 : CAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCA : 34439 337 : AsnArgGlyValMetIleLeuLeuMetValArgSerGlnArgArgLeuThrIleThrAla : 356 .!. ! ! !:!::!!!!!:!!||| !|||!!! |||! !||| !:!:|||||| GluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAla 34440 : GAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCA : 34499 357 : GlyLysPheMetAspLeuSerMetGlnGlyPheAlaAsnValLeuLysAlaSerValSer : 376 |||||||||! !!!!||||||:!! !|||::!!.!||| ! :::::: GlyLysPheSerThrPheSerMetGluMetPheSerThrValSerProIleAsnIleHis 34500 : GGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTGTAAGCccgataaatattcat : 34559 377 : Tyr : 377 ::: Phe 34560 : ttt : 34564 vulgar: AmOr167JOI 316 377 . KQ414804.1 34381 34564 + 115 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34382 34564 115 + . gene_id 2 ; sequence AmOr167JOI ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 34382 34564 . + . KQ414804.1 exonerate:protein2genome:local exon 34382 34564 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34382 34564 115 + . alignment_id 2 ; Query AmOr167JOI ; Align 34382 317 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr160 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 317 -> 389 Target range: 34369 -> 34668 318 : CysLeuIleAsnGluSerSerGluValGlnMetAlaCysTyrPheThrAsnTrpTyrAsp : 337 ||| !||| !:!!|||!!!|||:!!...! :!!..!||| :!!|||||||||:!! CysGlyIlePheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsn 34370 : tGTGGTATATTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAAC : 34427 338 : LeuProGluGlnTyrThrArgSerLeuIlePheCysIleAlaArgAlaGlnLysProLeu : 357 :!! !! ! ! ! .!!!:!!!!|||:!!||| !!!: !|||.!! :::|||||| ValSerProProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeu 34428 : GTCTCACCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTT : 34487 358 : TyrLeuThrAlaGlyLysPheTyrValPheSerLeuGluThrPheAlaVal >>>> Ta : 375 ! !|||||||||||||||||| !..!||||||:!!|||! !|||::!..! CysLeuThrAlaGlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34488 : TGCTTGACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt....... : 34543 376 : rget Intron 1 >>>> IleValLysAlaSerMetAlaTyrLeuSerValLeuLysS : 388 83 bp |||:!!|||.!!:!!|||!.!||||||||||||||| ! ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeuT 34544 : ..................agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTCA : 34663 389 : erIle : 389 !!:!! hrVal 34664 : CAGTT : 34668 vulgar: AmOr160 317 389 . KQ414804.1 34369 34668 + 145 M 57 171 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34370 34668 145 + . gene_id 1 ; sequence AmOr160 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34370 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34370 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34668 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34668 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34370 34668 145 + . alignment_id 1 ; Query AmOr160 ; Align 34370 318 171 ; Align 34624 375 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr160 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 322 -> 386 Target range: 39965 -> 40235 323 : SerSerGluValGlnMetAlaCysTyrPheThrAsnTrpTyrAspLeuProGluGlnTyr : 342 |||!!!! !:!! ...:!!...||| ! !|||||||||||||||||| !:!!:!! SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 343 : ThrArgSerLeuIlePheCysIleAlaArgAlaGlnLysProLeuTyrLeuThrAlaGly : 362 .!! !||||||:!!.!! |||..!||||||||| ! !!!!! ! :!!||||||||| AlaValSerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGly 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGA : 40083 363 : LysPheTyrValPheSerLeuGluThrPheAlaVal >>>> Target Intron 1 > : 375 |||||| ! !|||||||||||| !||| !!.! 78 bp LysPheSerProPheSerLeuGluLeuPheAsnAla++ 40084 : AAATTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTgt...................... : 40124 376 : >>> IleValLysAlaSerMetAlaTyrLeuSerValLeu : 386 :!!:!!|||.!!||| !.!||||||||||||||| ++ValLeuLysThrSerAlaGlyTyrLeuSerValLeu 40125 : ...agGTTTTAAAAACGTCTGCTGGATATCTTTCCGTGTTG : 40235 vulgar: AmOr160 322 386 . KQ414804.1 39965 40235 + 137 M 52 156 5 0 2 I 0 74 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40235 137 + . gene_id 2 ; sequence AmOr160 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39966 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40235 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40235 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39966 40235 137 + . alignment_id 2 ; Query AmOr160 ; Align 39966 323 156 ; Align 40200 375 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr166JOI Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 153 -> 209 Target range: 36764 -> 36932 154 : LeuLeuLeuLysMetAsnLeuProPheAspThrAsnLysSerProIleTyrGluPheVal : 173 ||||||:!! ! !..!!!|||!:!||||||||||||||||||! !||||||.!!..! LeuLeuIleProAlaThrPheProTyrAspThrAsnLysSerProAsnTyrGluIleThr 36765 : CTACTTATCCCGGCCACATTTCCATACGACACGAATAAAAGTCCTAATTACGAAATTACT : 36822 174 : ValIleIleGlnTyrPheTyrGlnValSerAlaAlaPheValPheGlyValPheAlaAla : 193 !:!! !|||!:! ! !|||! !::!|||.!. !!:!..! !|||! !.!! TrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSerCysPheAspThr 36823 : TGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGATACG : 36882 194 : PheLeuLeuMetIleValLeuHisValGlyCysGlnIleAspIleMet : 209 |||:!! !:!::!!|||||||||:!! !! !!|||:!! !:!!:!: PheValAlaValLeuValLeuHisIleCysGlyGlnLeuThrValLeu 36883 : TTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACTGTTCTC : 36932 vulgar: AmOr166JOI 153 209 . KQ414804.1 36764 36932 + 103 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36765 36932 103 + . gene_id 1 ; sequence AmOr166JOI ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36765 36932 . + . KQ414804.1 exonerate:protein2genome:local exon 36765 36932 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36765 36932 103 + . alignment_id 1 ; Query AmOr166JOI ; Align 36765 154 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr166JOI Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 122 -> 206 Target range: 44781 -> 45033 123 : SerThrIleIleCysThrCysValAlaSerThrValCysTyrAlaIleGlyIlePheSer : 142 !.!||||||||| !!!:! ||| !!!! !:!! ! !! ! !|||||| ! LysThrIleIleSerSerThrValLeuCysHisIleValValIleThrTyrIlePheLeu 44782 : AAGACTATAATAAGCAGCACAGTGTTATGTCACATTGTGGTCATCACTTATATATTTCTA : 44839 143 : HisGlnGluValAsnValThrSerSerArgGluLeuLeuLeuLysMetAsnLeuProPhe : 162 !.. ..!!.. ! !|||.!!! !..!||||||!!!::: !!!!!|||!:! ArgPheLeuThrArgLysTyrSerGlyThrArgLeuLeuPheArgAlaTyrPheProTyr 44840 : CGATTCCTCACCAGGAAGTACAGCGGCACCAGACTACTCTTCCGTGCTTATTTCCCTTAC : 44899 163 : AspThrAsnLysSerProIleTyrGluPheValValIleIleGlnTyrPheTyrGlnVal : 182 |||!:!:!! ||||||! !|||||||||..!|||||| !||| !.!. ! !! AspSerAspValSerProAsnTyrGluPheThrValIleAlaGlnIleIleAlaAlaPhe 44900 : GACAGCGATGTCAGTCCAAATTACGAATTTACAGTGATTGCTCAAATCATAGCTGCTTTT : 44959 183 : SerAlaAlaPheValPheGlyValPheAlaAlaPheLeuLeuMetIleValLeuHisVal : 202 ! !|||||| !..!!:! !!.! !!! !.!!|||:!!:!!|||:!!:!!||||||||| TyrAlaAlaThrThrTyrThrAlaValAspThrPheIleValMetLeuIleLeuHisVal 44960 : TATGCAGCCACCACATACACAGCCGTCGATACTTTCATTGTAATGTTAATTCTGCACGTT : 45019 203 : GlyCysGlnIle : 206 !! ! |||:!! CysGlyGlnLeu 45020 : TGTGGACAACTT : 45033 vulgar: AmOr166JOI 122 206 . KQ414804.1 44781 45033 + 103 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44782 45033 103 + . gene_id 2 ; sequence AmOr166JOI ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44782 45033 . + . KQ414804.1 exonerate:protein2genome:local exon 44782 45033 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44782 45033 103 + . alignment_id 2 ; Query AmOr166JOI ; Align 44782 123 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr172JOI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 671 Query range: 89 -> 393 Target range: 484778 -> 487277 90 : LysAsnPheLeuAspGluIleLysAsnAspTrpAsnSerLeuArgAsnIleGluGluL : 109 |||.!.||||||!!:..!|||:!!:!!|||||||||||||||! !|||! !||||||| LysGluPheLeuGluArgIleGluHisAspTrpAsnSerLeuThrAsnLysGluGluL 484779 : AAGGAGTTTTTGGAACGAATTGAACACGATTGGAACTCGTTGACGAATAAAGAGGAGC : 484836 110 : euArgIleIleHisGluTyrSerLysThrIleLysLysIleThrIleCysPheVal{I : 128 |||||||||||||||||||||||!....!! !:! :!!|||||||||||| !{: euArgIleIleHisGluTyrSerSerValThrArgValLeuThrIleCysPheSer{L 484837 : TTCGGATCATTCACGAATATTCCAGTGTCACGAGAGTTCTAACCATATGTTTCTCA{T : 484893 129 : } >>>> Target Intron 1 >>>> {le}IleIleValProLeuGlnLeuVal : 136 } 776 bp {!!}||||||! !|||! ! !|||||| }++ ++{eu}IleIleGlyProSerLeuLeuVal 484894 : }gt.........................ag{TA}ATTATCGGTCCATCGTTACTTGTG : 485693 137 : PhePheLeuAsnValPheGlyAsnAsnIleLeuAspIleLeuIleProLeuAsnHisT : 156 .!..!!|||..!:!!|||..!|||!:!|||||||||||||||||||||||||||:!!| LeuIleLeuGlyIlePheAsnAsnSerIleLeuAspIleLeuIleProLeuAsnTyrT 485694 : CTGATTCTTGGTATATTTAACAACAGTATTCTGGACATTTTGATTCCTTTGAATTACA : 485753 157 : hrArgProArgThrValProIleGluIleTyrTyrPheIleAspGlnGlnLysPhePh : 175 ||||||||||||||:!!||||||.!. ! :!!|||:!!||||||||||||!:!|| hrArgProArgThrIleProIleAsnSerGluHisPheValAspGlnGlnLysTyrPh 485754 : CTCGTCCGCGGACGATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTT : 485810 176 : ePhePhePheGlyMetHisLeuAsnIleIleThrSerPheGlyGlyLeuValTyrIle : 194 |!:! !.!!!.! |||:!! !:!!.!!..!! !.!!|||!.!:!!|||! :!! eTyrProIleAlaAlaHisValValLeuPheValIleIleGlyAlaIleValLeuLeu 485811 : CTACCCTATTGCAGCACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTC : 485867 195 : AlaIleGluThrIleSerMetGlyMetIleGlnHisLeuCysGlyLeuLeuLysIleT : 214 ::! ||| ::: |||..!!!:||||||||| !|||||||||! !! !|||. SerThrGluIleLeuIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIleV 485868 : AGCaccgaaatattaattatggCGATAATACAGCACACCTGTGGTTTGTATACAATCG : 485927 215 : hr{Se} >>>> Target Intron 2 >>>> {r}PheArgIleSerHisThrPh : 222 .!{.!} 476 bp {!}!:!||||||..!|||||||| al{Gl}++ ++{y}TyrArgIleAspHisThrPh 485928 : TT{GG}gt.........................ag{C}TATCGTATAGATCACACGTT : 486427 223 : eValAlaAsnIleProLysIleSerSerThrGluArgSerIleIleIleArgLysLys : 241 |||||||||||||||| !:!!||| !!.!!||||||!!!:!!:!!|||!.!!:!||| eValAlaAsnIleProGlyLeuSerProAlaGluArgArgValLeuIleHisArgLys 486428 : TGTTGCAAACATACCAGGACTTTCTCCTGCGGAAAGGAGAGTTCTAATTCACAGAAAA : 486484 242 : ValMetSerIleValTyrLeuHisValLysIleLysLysTyrIleAsnTrpIleGlnG : 261 :!!:!:|||:!!||| !!|||||| !!:!:!!|||:!!! :!!::!!! !|||! IleValSerLeuValAsnLeuHisLysArgValLysGluLeuValSerCysTyrGlnV 486485 : ATAGTCTCGCTCGTGAATTTGCACAAAAGAGTCAAGGAGTTAGTATCCTGTTATCAAG : 486544 262 : luLysIleIleIleThrTyrAspLeuLeuIleLeuLeuGlyLeuIleAlaPheSerIl : 280 !! :!!:!!:!!|||! .!.! ::: ......:::||||||||| alIleValLeuLeuThrLeuGlnGlnAsnAsnIleProAsnPheValAlaPheSerTy 486545 : TAATTGTTCTTTTAACCTTACAACAgaataatattccaaatttcgttGCTTTTTCCTA : 486601 281 : ePheIlePhe{G} >>>> Target Intron 3 >>>> {lu}LeuAlaLysSer : 288 ! ! {:} 191 bp {!!}|||!.!|||:!! rProHisArg{L}-+ +-{ys}LeuValLysAla 486602 : TCCACACAGA{A}at.........................at{AG}CTCGTCAAAGCA : 486816 289 : IleThrSerArgThrAsnThrAsnGluIlePheSerSerLeuIlePheValIleCysI : 308 :!!|||!.!!!!! !.!. !:!!|||:::...... |||...|||!.! ! !!| ValThrLysSerLysGlnLeuAspGluMetLeuGluPheLeuPhePheAlaCysGlyI 486817 : GTTACGAAGAGTAAACAGCTGGACgaaatgttggaatttttgttcttCGCGTGTGGCA : 486876 309 : leThrIleTyrGlyPheIleProAsnHisPheAlaGlnGluIleIleAsnHisSerSe : 327 ||! ! !|||! !|||:!! !!|||:!!|||||||||:::||||||||||||||||| leIleCysTyrGluPheValAlaAsnTyrPheAlaGlnLysIleIleAsnHisSerSe 486877 : TCATTTGCTACGAATTCGTTGCTAATTATTTTGcacagaaaataataaatcacaGTTC : 486933 328 : rAsnIlePheIleAsp{Th} >>>> Target Intron 4 >>>> {r}TyrAsn : 335 |:!!||||||:!: !!{.!} 76 bp {!}|||||| rHisIlePheValHis{Al}++ ++{a}TyrAsn 486934 : TCACATTTTCGTGCAT{GC}gt.........................ag{G}TACAAT : 487033 336 : ThrGluTrpTyrLysLeuProIleIleGluGlnLysLeuLeuLeuPheIleMetGlnA : 355 :!!|||||||||!:!:!!|||:!! |||||||||:::||||||.!!:!:||||||| SerGluTrpTyrArgIleProValAlaGluGlnLysValLeuLeuLeuLeuMetGlnA 487034 : TCAGAATGGTACAGAATCCCTGTAGCGGAacaaaaagtattattacTCCTGATGCAAA : 487093 356 : snAsnLeuLysSerLeuAsnPheValLeuLeuGlyThrMetIleAlaSerTyrAsnVa : 374 ||!:!||||||..! !! .!!:!!||| !|||! !!!: !||||||!:!.!.! snSerLeuLysAspAspMetIleLeuLeuGlyGlyIleIleProAlaSerPheGlnGl 487094 : ATAGTTTAAAAGATGATATGATCCTACTTGGCGGAATTATTCCTGCATCTTTCCAGGG : 487150 375 : lTyrAlaMet >>>> Target Intron 5 >>>> IleLeuArgThrAlaPheS : 384 !!:!:!!:!! 68 bp !!::!!||||||:!!|||| yPheSerLeu++ ++MetIleArgThrSerPheS 487151 : ATTTTCACTGgt.........................agATGATTCGAACATCCTTCT : 487248 385 : erTyrPheMetValIleTyrSerMetAsp : 393 ||||||||||||||:!!||||||.!.!!: erTyrPheMetValLeuTyrSerPheGlu 487249 : CGTATTTCATGGTACTTTATTCTTTCGAG : 487277 vulgar: AmOr172JOI 89 393 . KQ414815.1 484778 487277 + 671 M 38 114 S 0 1 5 0 2 I 0 772 3 0 2 S 1 2 M 86 258 S 0 2 5 0 2 I 0 472 3 0 2 S 1 1 M 68 204 S 0 1 5 0 2 I 0 187 3 0 2 S 1 2 M 48 144 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 44 132 5 0 2 I 0 64 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 484779 487277 671 + . gene_id 1 ; sequence AmOr172JOI ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 484779 484893 . + . KQ414815.1 exonerate:protein2genome:local exon 484779 484893 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 484894 484895 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 484894 485669 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 485668 485669 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 485670 485931 . + . KQ414815.1 exonerate:protein2genome:local exon 485670 485931 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 485932 485933 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 485932 486407 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 486406 486407 . + . intron_id 1 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 486408 486613 . + . KQ414815.1 exonerate:protein2genome:local exon 486408 486613 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 486614 486615 . + . intron_id 3 ; splice_site "AT" KQ414815.1 exonerate:protein2genome:local intron 486614 486804 . + . intron_id 3 KQ414815.1 exonerate:protein2genome:local splice3 486803 486804 . + . intron_id 2 ; splice_site "AT" KQ414815.1 exonerate:protein2genome:local cds 486805 486952 . + . KQ414815.1 exonerate:protein2genome:local exon 486805 486952 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 486953 486954 . + . intron_id 4 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 486953 487028 . + . intron_id 4 KQ414815.1 exonerate:protein2genome:local splice3 487027 487028 . + . intron_id 3 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 487029 487161 . + . KQ414815.1 exonerate:protein2genome:local exon 487029 487161 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 487162 487163 . + . intron_id 5 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 487162 487229 . + . intron_id 5 KQ414815.1 exonerate:protein2genome:local splice3 487228 487229 . + . intron_id 4 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 487230 487277 . + . KQ414815.1 exonerate:protein2genome:local exon 487230 487277 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 484779 487277 671 + . alignment_id 1 ; Query AmOr172JOI ; Align 484779 90 114 ; Align 485672 129 258 ; Align 486409 216 204 ; Align 486807 285 144 ; Align 487030 334 132 ; Align 487230 378 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr172JOI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 134 -> 213 Target range: 448058 -> 448295 135 : LeuValPhePheLeuAsnValPheGlyAsnAsnIleLeuAspIleLeuIleProLeuA : 154 :!! !||| !||| !! !|||! ! :::...||||||||||||!!:|||:!!| IleSerPheThrLeuValGluPheValValHisPheLeuAspIleLeuMetProMetA 448059 : ATTAGCTTTACCTTGGTTGAGTTCGTGGTAcattttctcgatattttaATGCCAATGA : 448116 155 : snHisThrArgProArgThrValProIleGluIleTyrTyrPheIleAspGlnGlnLy : 173 || :!!! !! !!.! !:!!|||.!! !||| ! ! !||| !||||||.!.|| snValSerThrArgHisGluLeuProPheLeuIleGlnCysPheCysAspGlnAspLy 448117 : ACGTATCTACACGGCACGAGCTACCCTTCCTAATTCAATGTTTCTGTGATCAAGATAA : 448173 174 : sPhePhePhePhePheGlyMetHisLeuAsnIleIleThrSerPheGlyGlyLeuVal : 192 ||||||| !!:!.!. !:!: !|||! !:!!:!!|||! !!!.|||||| !||| sPhePheHisTyrIleLeuValPheLeuIleValLeuThrIleLeuGlyGlySerVal 448174 : ATTCTTCCACTATATATTAGTTTTCTTGATCGTTCTCACTATTTTGGGTGGAAGTGTG : 448230 193 : TyrIleAlaIleGluThrIleSerMetGlyMetIleGlnHisLeuCysGlyLeuLeuL : 212 :!!|||! ! !|||! !! !:!! !.!.! !||||||! !|||||||||!!!| ValLeuAlaThrThrThrThrTyrLeuIlePheSerGlnHisCysCysGlyLeuPheL 448231 : GTATTAGCCACTACAACGACTTACTTGATATTCAGTCAACATTGTTGTGGATTGTTCA : 448290 213 : ysIle : 213 ||||| ysIle 448291 : AAATT : 448295 vulgar: AmOr172JOI 134 213 . KQ414815.1 448058 448295 + 133 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448059 448295 133 + . gene_id 2 ; sequence AmOr172JOI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448059 448295 . + . KQ414815.1 exonerate:protein2genome:local exon 448059 448295 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448059 448295 133 + . alignment_id 2 ; Query AmOr172JOI ; Align 448059 135 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr172JOI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 128 -> 213 Target range: 481980 -> 482235 129 : IleIleValProLeuGlnLeuValPhePheLeuAsnValPheGlyAsnAsnIleLeuA : 148 :!!||| !|||! ! !|||:!!.!..!.||| ! !.!...!!:! !:!!|||| LeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuA 481981 : TTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAG : 482038 149 : spIleLeuIleProLeuAsnHisThrArgProArgThrValProIleGluIleTyrTy : 167 ||:!!:!!:!!|||||||||.!.|||||| !!!.! ! !!|||:!!..!!!: ! || spValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMetGluTy 482039 : ACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTA : 482095 168 : rPheIleAspGlnGlnLysPhePhePhePhePheGlyMetHisLeuAsnIleIleThr : 186 |||||||||||||||||||!:!! .!!|||.!! !.!.|||! ! .!! ! ! rPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPhe 482096 : CTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTT : 482152 187 : SerPheGlyGlyLeuValTyrIleAlaIleGluThrIleSerMetGlyMetIleGlnH : 206 ! ! ! !!.! !:!! !:!!!.!|||||||||:!:! !:!: ! !:!!:!!| LeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluH 482153 : CTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAAC : 482212 207 : isLeuCysGlyLeuLeuLysIle : 213 || !....!!|||!!!! :!! isAlaAlaSerLeuPheThrLeu 482213 : ACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: AmOr172JOI 128 213 . KQ414815.1 481980 482235 + 131 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481981 482235 131 + . gene_id 3 ; sequence AmOr172JOI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481981 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481981 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481981 482235 131 + . alignment_id 3 ; Query AmOr172JOI ; Align 481981 129 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr172JOI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 0 -> 50 Target range: 447014 -> 447164 1 : MetAspPheGluGlySerGlnTyrTyrAsnIleAsnArgIleLeuMetIleSerValG : 20 ||||||||| |||! !:!!||||||!:!:!!|||!:! |||:!!! ! !|||| MetAspPheLeuGlyTyrGluTyrTyrSerLeuAsnGlnGlnLeuLeuThrLeuValG 447015 : ATGGACTTCCTCGGGTACGAGTACTATAGCCTCAATCAACAGCTTTTGACGTTGGTCG : 447072 21 : lyLeuTrpProTyrGluArgThrIleTyrSerLysMetLeuAsnIleLeuIlePhePh : 39 ||||||||||||||:!!||| !! ! !!! :!:! !|||! !! !!!:.!.|| lyLeuTrpProTyrLysArgTyrLysLeuThrPheLeuTyrAsnThrTyrMetLeuPh 447073 : GACTGTGGCCGTACAAGAGGTACAAGTTGACATTCCTTTACAATACCTACATGCTGTT : 447129 40 : ePheLeuSerThrAlaIlePheIleGlnValMet : 50 ||||!!!! !||||||.!!|||:!!||||||:!: ePhePheIleThrAlaPhePheLeuGlnValLeu 447130 : CTTCTTCATCACCGCTTTCTTTCTTCAGGTACTT : 447164 vulgar: AmOr172JOI 0 50 . KQ414815.1 447014 447164 + 125 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 447015 447164 125 + . gene_id 4 ; sequence AmOr172JOI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 447015 447164 . + . KQ414815.1 exonerate:protein2genome:local exon 447015 447164 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 447015 447164 125 + . alignment_id 4 ; Query AmOr172JOI ; Align 447015 1 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr172JOI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 145 -> 214 Target range: 457207 -> 457414 146 : IleLeuAspIleLeuIleProLeuAsnHisThrArgProArgThrValProIleGluI : 165 :!!|||||||||:!!:!!|||||||||.!.:!!|||||| !! !:!! !:!! ! LeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrLeuThrA 457208 : TTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAG : 457265 166 : leTyrTyrPheIleAspGlnGlnLysPhePhePhePhePheGlyMetHisLeuAsnIl : 184 ! ||||||:!!|||..!:!!|||!:!.!. !!:!.!! ! !|||:!!! !! laGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleTh 457266 : CGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCAC : 457322 185 : eIleThrSerPheGlyGlyLeuValTyrIleAlaIleGluThrIleSerMetGlyMet : 203 ! ! !.!!!.!!.! !..!! ! !|||! !|||:!!:!! !!!: !! rCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsn 457323 : GTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAAC : 457379 204 : IleGlnHisLeuCysGlyLeuLeuLysIleThr : 214 :!!! !|||:!!|||||||||!!!|||:!!||| ValLeuHisValCysGlyLeuPheLysLeuThr 457380 : GTACTGCACGTTTGTGGATTGTTCAAGCTTACT : 457414 vulgar: AmOr172JOI 145 214 . KQ414815.1 457207 457414 + 114 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457208 457414 114 + . gene_id 5 ; sequence AmOr172JOI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457208 457414 . + . KQ414815.1 exonerate:protein2genome:local exon 457208 457414 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457208 457414 114 + . alignment_id 5 ; Query AmOr172JOI ; Align 457208 146 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr159NP Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 242 Query range: 154 -> 257 Target range: 468639 -> 469471 155 : LeuGluAsnIleTyrLysLeuCysIleAsnLeuIleLeuLeuIleArgLysPheCysP : 174 :!!!!::!!.!! ! ! |||||| !|||:!!.!!||||||!!: !!:!!.!! !!: MetAspAspPheGluAspLeuCysArgAsnIlePheLeuLeuMetGlyGlnLeuGlyT 468640 : ATGGACGACTTCGAAGATTTATGTCGTAACATATTCCTACTAATGGGACAGCTTGGTt : 468697 175 : heLeuPheLeuIleThrTyrLeuGlyGlnAsnIleGluAsnHisSerAsnGluValPh : 193 ::||||||:::|||...|||:::||||||:!!:!!! ||||||!:!||||||||||| yrLeuPheIleIleAsnTyrMetGlyGlnAspLeuValAsnHisAsnAsnGluValPh 468698 : acttatttataattaattacatgGGACAGGATCTAGTCAATCACAATAACGAGGTTTT : 468754 194 : eGluLys{Cy} >>>> Target Intron 1 >>>> {s}TyrAspSerLeuTrp : 201 |:!!! !{..} 452 bp {.}|||:!!||||||||| eGlnThr{Al}++ ++{a}TyrAsnSerLeuTrp 468755 : CCAAACA{GC}gt.........................ag{A}TACAATAGTCTATGG : 469230 202 : TyrThrAlaProValAlaThrArgLysLeuLeuLeuIleIleMetIleAsnIleMetL : 221 |||! !||||||..! !!..!|||||||||||||||! !!!:|||:!:.!.! !:!:! TyrIleAlaProThrProValArgLysLeuLeuLeuThrMetMetLeuGlnAsnValA 469231 : TATATAGCACCAACGCCTGTAAGGAAATTACTATTAACCATGATGCTGCAAAATGTAA : 469290 222 : ysProCysGlnCysLysMetPheGlyGlyLeuPheLysGlyAsnIleGluGlyPheAl : 240 :!! ! !! ! !|||:!:.!.|||||||||!:!! ! !|||||||||||||||:! rgGlnArgValPheLysLeuMetGlyGlyLeuTyrIleThrAsnIleGluGlyPheSe 469291 : GACAGCGCGTTTTCAAGTTAATGGGAGGATTGTATATAACTAATATCGAAGGTTTTTC : 469347 241 : aGln >>>> Target Intron 2 >>>> IleIleArgIleCysIleSerTyrP : 250 !..! 71 bp |||:!:|||! !||||||||||||| rMet++ ++IleLeuArgThrCysIleSerTyrP 469348 : CATGgt.........................agATCTTGCGCACATGCATCTCTTACT : 469448 251 : heMetSerLeuTyrSerThrGln : 257 |||||! !:!!|||||||||||| heMetPheMetTyrSerThrGln 469449 : TCATGTTCATGTACTCTACGCAA : 469471 vulgar: AmOr159NP 154 257 . KQ414815.1 468639 469471 + 242 M 41 123 S 0 2 5 0 2 I 0 448 3 0 2 S 1 1 M 45 135 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 468640 469471 242 + . gene_id 1 ; sequence AmOr159NP ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 468640 468764 . + . KQ414815.1 exonerate:protein2genome:local exon 468640 468764 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 468765 468766 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 468765 469216 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 469215 469216 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 469217 469352 . + . KQ414815.1 exonerate:protein2genome:local exon 469217 469352 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 469353 469354 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 469353 469423 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 469422 469423 . + . intron_id 1 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 469424 469471 . + . KQ414815.1 exonerate:protein2genome:local exon 469424 469471 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 468640 469471 242 + . alignment_id 1 ; Query AmOr159NP ; Align 468640 155 123 ; Align 469218 197 135 ; Align 469424 242 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr159NP Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 6 -> 92 Target range: 457195 -> 457759 7 : LeuTyrProMetValTyrAsnValIleLeuProLeuAsnGluSerArgLysPheIleI : 26 |||!:!|||!!::!! !:!!:!!:!::!!|||||||||||||||||| ! ! : LeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluL 457196 : CTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGT : 457253 27 : leLeuCysAspIleTyrTyrPheValAspProGlnGluTyrSerSerIlePheLeuLe : 45 !!! ! ! ! |||||||||||| !:!!:!!|||! ! ! !.!!:!! euTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAl 457254 : TATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGC : 457310 46 : uTyrThrLeuValLeuIlePheIleLeuTyrThrIleIleGlyThrGlnPheThrIle : 64 !:!!! !:!!..!! !:!!.!.||| ! !|||! :!! !.!!.!. :!!:!! aHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeu 457311 : GCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTA : 457367 65 : IleIlePhe<->ValGlnHisCysCysGlyPhePheGlnAsnCys{Un} >>>> Ta : 79 :!!||| |||! !||| !||||||!!.|||:!! ! !{..} LeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeuThr{Se}++ 457368 : CTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTTACT{AG}gt....... : 457419 80 : rget Intron 1 >>>> {k}TyrArgLeuGluHisAlaMetAspThrTyrLysGl : 91 303 bp {.}|||||||||||||||:!!:!!||| ! !! .. ++{r}TyrArgLeuGluHisSerLeuAspHisValThrSe 457420 : ..................ag{C}TATAGATTAGAACACTCTTTGGACCACGTTACCTC : 457754 92 : yGln : 92 !||| rGln 457755 : ACAA : 457759 vulgar: AmOr159NP 6 92 . KQ414815.1 457195 457759 + 118 M 61 183 G 0 3 M 11 33 S 0 2 5 0 2 I 0 299 3 0 2 S 1 1 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457196 457759 118 + . gene_id 2 ; sequence AmOr159NP ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 457196 457416 . + . KQ414815.1 exonerate:protein2genome:local exon 457196 457416 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 457417 457418 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 457417 457719 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457718 457719 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457720 457759 . + . KQ414815.1 exonerate:protein2genome:local exon 457720 457759 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457196 457759 118 + . alignment_id 2 ; Query AmOr159NP ; Align 457196 7 183 ; Align 457382 68 33 ; Align 457721 80 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr159NP Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 78 -> 118 Target range: 468093 -> 468213 79 : UnkTyrArgLeuGluHisAlaMetAspThrTyrLysGlyGlnAsnGluIleGluIleT : 98 ...||||||:!!! !:!!|||!!:!!:!:!|||!.. !!! !|||||| !:!!! !| SerTyrArgIleGlyTyrAlaIleGluSerTyrSerTrpLeuAsnGluProGlnArgT 468094 : AGTTATCGAATCGGATATGCAATAGAAAGTTACAGCTGGCTAAATGAACCTCAAAGAT : 468151 99 : yrTyrIleIleCysThrLysLeuIleLysAlaIleGluValTyrLysLeuAlaValLy : 117 ||||||||||| !||||||||||||||||||:!:||| !:!! ||||||:!!|| yrTyrIleIleLeuThrLysLeuIleLysAlaValGluSerHisCysLeuAlaIleLy 468152 : ATTACATTATTCTTACAAAACTAATCAAAGCAGTGGAATCTCATTGTCTAGCTATCAA : 468208 118 : sPhe : 118 |!:! sTyr 468209 : GTAT : 468213 vulgar: AmOr159NP 78 118 . KQ414815.1 468093 468213 + 104 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 468094 468213 104 + . gene_id 3 ; sequence AmOr159NP ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 468094 468213 . + . KQ414815.1 exonerate:protein2genome:local exon 468094 468213 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 468094 468213 104 + . alignment_id 3 ; Query AmOr159NP ; Align 468094 79 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr159NP Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 2 -> 76 Target range: 475542 -> 475767 3 : MetLeuMetIleLeuTyrProMetValTyrAsnValIleLeuProLeuAsnGluSerA : 22 !!:|||:!::!!!!!! !!! !:!! !:!! !:!:||||||||||||||||||| IleLeuLeuLeuPheSerSerLysIleLeuAspSerLeuLeuProLeuAsnGluSerA 475543 : ATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTC : 475600 23 : rgLysPheIleIleLeuCysAspIleTyrTyrPheValAspProGlnGluTyrSerSe : 41 || ! !||| ||| ||||||:::::: !|||:!!|||! !! rgProSerTrpSerLeuIleArgIleGluTyrPheIleAsnGluGlnLysTyrPheTy 475601 : GTCCTAGCTGGTCTCTGAtacgaatagaatatttcataaacGAACAGAAATACTTTTA : 475657 42 : rIlePheLeuLeuTyrThrLeuValLeuIlePheIleLeu<->TyrThrIleIleGly : 59 !:!: !:!!:!!||| ! !||| !|||.!!:!:!!! !||| !:!!!.! rLeuSerValIleTyrGlnThrValThrIleLeuLeuPheGlyThrThrTyrValAla 475658 : TCTGAGCGTGATCTATCAGACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCA : 475714 60 : ThrGlnPheThrIleIleIlePheValGlnHisCysCysGlyPhePheGln : 76 |||:!! ! !.!!! !!!:!:::!!||||||||| ......|||::: ThrGluAlaIlePheThrMetTrpLeuGlnHisCysIleSerLeuPheGlu 475715 : ACTGAAGCAATATTTACCATGTGGTTGCAACATTGCATaagtttatttgaa : 475767 vulgar: AmOr159NP 2 76 . KQ414815.1 475542 475767 + 102 M 52 156 G 0 3 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475543 475767 102 + . gene_id 4 ; sequence AmOr159NP ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475543 475767 . + . KQ414815.1 exonerate:protein2genome:local exon 475543 475767 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475543 475767 102 + . alignment_id 4 ; Query AmOr159NP ; Align 475543 3 156 ; Align 475702 55 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr172JOI Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 332 -> 392 Target range: 128560 -> 128306 333 : ThrTyrAsnThrGluTrpTyrLysLeuProIleIleGluGlnLysLeuLeuLeuPheI : 352 !:!||| !.!!:!!||||||||| !|||::: ...||||||:::|||||||||: SerTyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheL 128560 : AGCTATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCC : 128503 353 : leMetGlnAsnAsnLeuLysSerLeuAsnPheValLeuLeuGlyThrMetIleAlaSe : 371 !!|||!!.!.. !:!!:!! !!! !!...!. !||| !..! !:!: !|||.! euMetHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGl 128502 : TCATGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGG : 128446 372 : rTyrAsnValTyrAlaMet >>>> Target Intron 1 >>>> IleLeuArgT : 381 ! !!.!.:!!||||||! 74 bp :!::!!!:!| yAsnGluLeuTyrAlaThr++ ++MetValGlnT 128445 : TAACGAGTTGTACGCTACCgt.........................agaTGGTGCAGA : 128342 382 : hrAlaPheSerTyrPheMetValIleTyrSerMet : 392 ||!.!||||||||||||! !|||:!!||||||:!! hrGlyPheSerTyrPheThrValLeuTyrSerLeu 128341 : CTGGTTTCTCCTACTTTACGGTTCTCTACTCGTTG : 128307 vulgar: AmOr172JOI 332 392 . KQ414817.1 128560 128306 - 113 M 45 135 5 0 2 I 0 70 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128307 128560 113 - . gene_id 1 ; sequence AmOr172JOI ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128560 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128560 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128307 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128307 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128307 128560 113 - . alignment_id 1 ; Query AmOr172JOI ; Align 128561 333 135 ; Align 128352 378 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr172JOI Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 134 -> 213 Target range: 1224270 -> 1224030 135 : LeuValPhePheLeuAsnValPheGlyAsnAsnIleLeuAspIleLeuIleProLe : 153 ||||||!:!.!. ! ! !!!. !||| :!!||||||:!!:!! ||||| LeuValTyrMetSerPheProLeuIleAsnProValLeuAspValValAlaProLe 1224270 : TTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTT : 1224216 154 : uAsnHisThrArgProArgThrValProIleGluIle<->TyrTyrPheIleAspG : 171 ||||.!.||||||||||||! !:!! !:!! !:!! ||| |||||||||: uAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleAspG 1224215 : AAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACG : 1224159 172 : lnGlnLysPhePhePhePhePheGlyMetHisLeuAsnIleIleThrSerPheGly : 189 !! ! :!! !|||!:! ! ! ..!.!.|||||| !!! !! !..!! !! ! !! luTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSerCys 1224158 : AGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGC : 1224105 190 : GlyLeuValTyrIleAlaIleGluThrIleSerMetGlyMetIleGlnHisLeuCy : 208 |||:!!:!! ||||||:!:!!:! !:!!! !!!: !!!:||| |||||||| GlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCy 1224104 : GGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTG : 1224048 209 : sGlyLeuLeuLysIle : 213 |||||||!!! !:!: sGlyLeuPheAlaVal 1224047 : CGGATTGTTCGCAGTG : 1224031 vulgar: AmOr172JOI 134 213 . KQ414851.1 1224270 1224030 - 125 M 31 93 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224270 125 - . gene_id 1 ; sequence AmOr172JOI ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224270 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224270 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224270 125 - . alignment_id 1 ; Query AmOr172JOI ; Align 1224271 135 93 ; Align 1224175 166 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr154 Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 454 Query range: 0 -> 234 Target range: 5294 -> 4042 1 : MetLeuLysLysValThrProGluAsnValIleTyrIleIleArgLeuSerValAlaIleCy : 21 ||||||||| ! !!:!||||||!..!.!|||! !:!!:!!!.!:!!! !..!|||.!! MetLeuLysTyrProSerProGluArgAlaIleSerLeuValHisValIleThrAlaPheTh 5294 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCACGTTATCACGGCTTTTAC : 5234 22 : sCysCysTrpProArgProPheAsnSerThrLysAsnGlnIlePheAlaPheLysValLeuG : 42 !||||||||||||! !|||! !..:!!||||||::!! !:!:.!! !||||||:!!|||: rCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuA 5233 : CTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGA : 5171 43 : lnIleSerThrIleIleSerAlaPheMetValPheLeuProLeuLeuTyrSerIleTyrLeu : 62 :! !! ! !:!!:!!!:!|||!!.:!!:!!||||||||||||||||||:!!:!::!!:!! rgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHisVal 5170 : GATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTG : 5111 63 : HisAsnAspAsnIleIleHisValPheLysCysIleCysLeuSerIleGlyIleThrGlnLe : 83 |||...:!!:!! ! :!!||| |||..! !||||||!!!:!!!.!:::...|||:: HisArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGlnIl 5110 : CATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCctcgtgcaaat : 5048 84 : uIleValGlnThrLeuIleCysPheIleLysHisAsnSerLeuGln >>>> Target In : 99 :... ||||||!!!:!!|||.!! !:!!:!!:!! !!!!||| 550 ePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGln++ 5047 : atttttccagacTTTCGTTTGCATCGGCCAATACGATCATTTTCAGgt.............. : 4998 100 : tron 1 >>>> ArgValValGluGluMetValAsnCysValLysGlnAlaGlnGlnSerG : 115 bp !:!:!!:!!||||||||| !! !||| !:!! !|||:!!! !! !| ++LysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrG 4997 : ...........agAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACG : 4402 116 : luIleGluIlePheTyrLysTyrIleGluLysCysLysIlePheTyrGlySerSerIleAla : 135 ||! !!!::!!||| ! ::!|||:!!.!.||| ...:::|||||| ::: !! :!! luArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSer 4401 : AAAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCA : 4342 136 : PheSerTyrLeuAlaAlaThrAlaPheMetLeuGlyProAlaIleLeuProIleSerPhePr : 156 !::! !||||||.!!|||! ! !.!.:!:|||||| ! !:!!:!! !! ! !!||||| TrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPhePr 4341 : TGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCC : 4279 157 : oLeuGluAlaGluTyrProPheHisValAsnGluSerLeuIleThrIleIleIleTyrMetH : 177 | !.!.|||! !|||||||||! !|||||| ..!! !:!:! !! !||||||!:!|||| oThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetH 4278 : AACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGC : 4216 178 : isGlnSerLeuValSerTyrGlnCysSerAlaAsnValCysValSerIlePheGlyAlaLeu : 197 ||||||||!!!|||.!! ||||||:!!|||:!!!.! !!:!!!:!:!:.!!..!|||||| isGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeu 4215 : ACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTG : 4156 198 : LeuLeuTrpPheThrValAlaArgPheGluCysLeuIleGluGluPheGlnLysCysSerAs : 218 |||||| ||||||..!|||||||||||| |||:!: !|||!!.::!!!. !!:!:! LeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAs 4155 : TTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGA : 4093 219 : nIleAspMetMetIleAlaCysIleLysLysGlnLeuGlnLeuLysArg : 234 !|||!!:! :!!||| ! !!!!:|||||| ! ! ! :!!::!||| pIleGluThrLeuIleLysSerMetLysLysTyrSerThrValArgArg 4092 : TATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: AmOr154 0 234 . LHQN01020543.1 5294 4042 - 454 M 98 294 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 5294 454 - . gene_id 1 ; sequence AmOr154 ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 5001 5294 . - . LHQN01020543.1 exonerate:protein2genome:local exon 5001 5294 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 4999 5000 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 4451 5000 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 4451 4452 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 4043 4450 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4450 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 5294 454 - . alignment_id 1 ; Query AmOr154 ; Align 5295 1 294 ; Align 4451 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr153PSE Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 157 Query range: 89 -> 207 Target range: 4447 -> 4075 90 : IleIleLysGluMetLysIleCysIleLysGluThrGlnGluTyrGluIleGluIlePheGl : 110 :!!|||:!!||||||||||||||| !:!! !.!!:!! !||||||! !!!::!!||||| LeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheGl 4447 : CTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGACGTCTTCCA : 4387 111 : nLysTyrIleAlaLysPheLysThrValTrpGlyCysAsnIleThrCysMetTyrLeuThrA : 131 |::!|||:!! !||| ... ::: ! :!!!! .!.|||||||||| nArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheTyrLeuThrA 4386 : ACGATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTTACTTAACAG : 4324 132 : laLeuAlaPheThrIleGlySerValPheIleSerThrSerLeuSerCysAspAlaGluTyr : 151 ||:!! !.!...!:!!||||||:!!.!!|||||| ! !!!!! !! !:!!|||! !||| laIleIleMetValLeuGlySerLeuLeuIleSerAspProPheProThrAsnAlaValTyr 4323 : CAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACCAACGCAGTATAT : 4264 152 : ProPheGlnLeuAsnTyrThrLeuValPheAlaIle<-><->ArgTyrGlnSerPheLeuSe : 170 ||||||! :!!|||!:! !! !:!! ::!||| ! !:!!|||||||||:!!.! ProPheProValAsnPheGluProLeuArgSerIleIlePheMetHisGlnSerPheValGl 4263 : CCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCACCAATCGTTCGTTGG : 4201 171 : rTyrGlnCysAlaTyrAlaCysAla<-><-><-><->AspHisUnkLeuLeuTrpPheThrA : 187 ! ||||||||| !..!::! ..! |||||| ||||||. yIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeuLeuLeuLeuPheThrT 4200 : CATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTGTTATTGCTATTCACTA : 4138 188 : laProArgPheGluCysLeuCysValGluLeuGlnAsnValThrAsnIleAsnMetLeuIle : 207 !! ! ||||||||| ||| ..!||||||::!||||||!.!:!!|||.!.! |||||| hrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAspIleGluThrLeuIle 4137 : CAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGATATCGAAACACTGATT : 4078 vulgar: AmOr153PSE 89 207 . LHQN01020543.1 4447 4075 - 157 M 74 222 G 0 6 M 15 45 G 0 12 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4076 4447 157 - . gene_id 1 ; sequence AmOr153PSE ; gene_orientation . LHQN01020543.1 exonerate:protein2genome:local cds 4076 4447 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4076 4447 . - . insertions 18 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4076 4447 157 - . alignment_id 1 ; Query AmOr153PSE ; Align 4448 90 222 ; Align 4220 164 45 ; Align 4163 179 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr152 Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 196 Query range: 0 -> 98 Target range: 5294 -> 5000 1 : MetLeuLysGlnIleIleSerGluLysThrIleGlnIleIleTrpPheSerValAlaIleTh : 21 ||||||||| ! ! ! !!|||!:!.!!|||...:!!:!! !!! !..!|||.!!|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValHisValIleThrAlaPheTh 5294 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCACGTTATCACGGCTTTTAC : 5234 22 : rPheCysTrpProIleSerLeuAsnSerSerLysThrGlnValPheIlePheLysIleLeuG : 42 |! !|||||||||:!! !!! !!..:!!!!!|||:!!! !|||.!! !||||||||||||: rCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuA 5233 : CTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGA : 5171 43 : lnIleIleSerIleIleAsnValPheMetLeuLeuLeuProLeuLeuTyrSerValTyrLeu : 62 :! !.!! !:!!:!!|||!.!!!.:!!|||!!!|||||||||||||||:!!:!!:!!:!! rgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHisVal 5170 : GATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTG : 5111 63 : HisPheAsnAspIleIleIleValSerLysSerIleAlaLeuSerValGlyLeuIleGlnVa : 83 ||| |||||| ! ! !|||:!!|||:!! !..!|||!!!:!!!.!|||:::|||:: HisArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGlnIl 5110 : CATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCctcgtgcaaat : 5048 84 : lIleValGlnThrIleIleCysPheIleLysTyrAspSerLeuGln : 98 :... ||||||.!!:!!|||.!! !:!!|||||| !!!!||| ePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGln 5047 : atttttccagacTTTCGTTTGCATCGGCCAATACGATCATTTTCAG : 5001 vulgar: AmOr152 0 98 . LHQN01020543.1 5294 5000 - 196 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 5001 5294 196 - . gene_id 1 ; sequence AmOr152 ; gene_orientation . LHQN01020543.1 exonerate:protein2genome:local cds 5001 5294 . - . LHQN01020543.1 exonerate:protein2genome:local exon 5001 5294 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 5001 5294 196 - . alignment_id 1 ; Query AmOr152 ; Align 5295 1 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr158FIX Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 252 Query range: 94 -> 232 Target range: 4462 -> 4042 95 : AsnAlaLeuGlnArgValValGluGluMetMetIleCysValLysGluGluGlnLeuTyr<- : 115 :!!.!!||||||!:!:!!:!!|||||||||! !|||||| !:!! !! !:!!! !||| AspThrLeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGl 4462 : GACACGTTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGA : 4402 116 : ><->AspIleLeuCysMetTyrValLysLysCysAsnIlePheTyrGlyGlyThrIleValL : 134 |||:!!!!! ||||||!!.||| ::::::|||||| ! !! uArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerT 4401 : AAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCAT : 4339 135 : euIleTyrGlyThrAlaThrValPheValLeuGlyProIlePheLeuProIleSerPhePro : 154 !.!!||| !||||||! !:!!.!.||||||||| !:!:.!!:!! !! ! !!|||||| rpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPhePro 4338 : GGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCA : 4279 155 : TrpGlyThrGluTyrProPheGlnValAsnTyrThrThrIleAsnValIleIleTyrAlaHi : 175 ..!.!!! !|||||||||! ||||||!:! ! !!:!:!.. !||||||!:! !|| ThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHi 4278 : ACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCA : 4216 176 : sGlnPhePheLeuValTyrGlnCysAlaAlaHisThrCysLeuSerLeuPheGlyAlaLeuL : 196 ||||! |||:!!! ! |||||||||||||||.!! !!:!!!:!:!!.!!..!||||||| sGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeuL 4215 : CCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTGT : 4153 197 : euLeuTrpPheAlaThrAlaArgPheGluCysLeuIleLysGluLeuGlnLysIleThrSer : 216 ||||| |||.!!||||||||||||||| |||:!:! !||||||::!!!.:!!!.!..! euLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAsp 4152 : TATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGAT : 4093 217 : IleAspMetLeuIleValCysLeuLysLysLeuLeuPheLeuArgArg : 232 |||!!:! |||||| ! !!:!!||||||! !! ! !:!!|||||| IleGluThrLeuIleLysSerMetLysLysTyrSerThrValArgArg 4092 : ATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: AmOr158FIX 94 232 . LHQN01020543.1 4462 4042 - 252 M 20 60 G 0 6 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 4462 252 - . gene_id 1 ; sequence AmOr158FIX ; gene_orientation . LHQN01020543.1 exonerate:protein2genome:local cds 4043 4462 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4462 . - . insertions 6 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 4462 252 - . alignment_id 1 ; Query AmOr158FIX ; Align 4463 95 60 ; Align 4397 115 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr155JOI Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 440 Query range: 0 -> 233 Target range: 5294 -> 4045 1 : MetLeuLysLysAlaThrProGluLysIleIleAspIleIleArgPheSerValAlaIleCy : 21 ||||||||| ! !!!:!||||||!:! !|||..!:!!:!!!.! !!! !..!|||.!! MetLeuLysTyrProSerProGluArgAlaIleSerLeuValHisValIleThrAlaPheTh 5294 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCACGTTATCACGGCTTTTAC : 5234 22 : sPheCysTrpProTyrProLeuAsnSerSerArgAsnGlnIlePheGlyPheLysValLeuG : 42 !! !||||||||| !|||! !!..:!!!!!!:!::!! !:!:.!! !||||||:!!|||: rCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuA 5233 : CTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGA : 5171 43 : lnIleSerThrMetValSerAlaCysIleMetLeuLeuProLeuLeuTyrSerIleTyrLeu : 62 :! !! ! !:!::!!!:!|||! :!::!!!!!|||||||||||||||:!!:!::!!:!! rgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHisVal 5170 : GATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTG : 5111 63 : HisAsnAspAspValIleHisIleSerLysCysIleCysIleSerIleGlyValThrGlnLe : 83 |||...:!!|||!.! :!!:!!:!!|||..! !|||:!:!!!:!!!.!:::...|||:: HisArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGlnIl 5110 : CATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCctcgtgcaaat : 5048 84 : uIleValGlnThrLeuValCysPheIleLysHisAsnSerLeuGln >>>> Target In : 99 :... ||||||!!!||||||.!! !:!!:!!:!! !!!!||| 550 ePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGln++ 5047 : atttttccagacTTTCGTTTGCATCGGCCAATACGATCATTTTCAGgt.............. : 4998 100 : tron 1 >>>> ArgValValGlyGluMetMetLysCysValLysGluAlaGlnGlnAsnG : 115 bp !:!:!!:!!! !||||||! !! ||| !:!! !|||:!!! ! !!| ++LysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrG 4997 : ...........agAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACG : 4402 116 : luIleGluIlePheSerLysTyrIleGluLysCysLysIlePheTyrGlySerSerIleIle : 135 ||! !!!::!!|||..!::!|||:!!.!.||| ...:::|||||| ::: !! ! luArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSer 4401 : AAAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCA : 4342 136 : PheSerTyrLeuThrSerThrAlaPheMetLeuGlyProIleIleLeuProIleSerPhePr : 156 !::! !|||||||||:!!! ! !.!.:!:|||||| !:!::!!:!! !! ! !!||||| TrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPhePr 4341 : TGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCC : 4279 157 : oPheAspAlaGluTyrProPheHisValAsnHisSerLeuValThrIleIleIleTyrIleH : 177 | !:!!|||! !|||||||||! !|||||| !..!! !:!!! !! !||||||!:!!!:| oThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetH 4278 : AACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGC : 4216 178 : isGlnSerLeuValGlyTyrGlnCysSerAlaAsnValCysAlaSerValPheGlyAlaLeu : 197 ||||||||!!!|||||| ||||||:!!|||:!!!.! !! !!:!|||.!!..!|||||| isGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeu 4215 : ACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTG : 4156 198 : LeuLeuTrpPheThrValAlaArgPheGluCysLeuIleValGluPheGlnLysCysThrAs : 218 |||||| ||||||..!|||||||||||| |||:!:..!|||!!.::!!!. !!.!|| LeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAs 4155 : TTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGA : 4093 219 : pIleAspMetValIleAlaCysValLysLysGlnValGlnLeuArg : 233 ||||!!:! :!!||| ! !!:!!|||||| ! ! :!!||| pIleGluThrLeuIleLysSerMetLysLysTyrSerThrValArg 4092 : TATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGG : 4046 vulgar: AmOr155JOI 0 233 . LHQN01020543.1 5294 4045 - 440 M 98 294 5 0 2 I 0 546 3 0 2 M 135 405 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4046 5294 440 - . gene_id 1 ; sequence AmOr155JOI ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 5001 5294 . - . LHQN01020543.1 exonerate:protein2genome:local exon 5001 5294 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 4999 5000 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 4451 5000 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 4451 4452 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 4046 4450 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4046 4450 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4046 5294 440 - . alignment_id 1 ; Query AmOr155JOI ; Align 5295 1 294 ; Align 4451 99 405 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr172JOI Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 144 -> 218 Target range: 1677 -> 1899 145 : AsnIleLeuAspIleLeuIleProLeuAsnHisThrArgProArgThrValProIleGluIl : 165 :!!|||||||||||||||:!!||| !|||.!.:!!||| ! !.!! ! ! ! ! HisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAl 1678 : CATATTTTGGACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGC : 1738 166 : eTyrTyrPheIleAspGlnGlnLysPhePhePhePhePheGlyMetHisLeuAsnIleIleT : 186 !|||||||||! !|||:!!!!.|||!:! ! ! !:!.!. !! !|||:!! !:!:! aTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValI 1739 : CTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGA : 1801 187 : hrSerPheGlyGlyLeuValTyrIleAlaIleGluThrIleSerMetGlyMetIleGlnHis : 206 ! ! ! ! ! !! !||||||.!!||| !!!:|||! !! !!!: !:!::!:|||||| leLeuValValPheTyrValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHis 1802 : TCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACAC : 1861 207 : LeuCysGlyLeuLeuLysIleThrSerPheArgIle : 218 !|||||||||||| :!::!!.!. :::||| GlyCysGlyLeuLeuAlaValSerGly***LysIle 1862 : GGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaatt : 1899 vulgar: AmOr172JOI 144 218 . KQ414921.1 1677 1899 + 114 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1678 1899 114 + . gene_id 1 ; sequence AmOr172JOI ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1678 1899 . + . KQ414921.1 exonerate:protein2genome:local exon 1678 1899 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1678 1899 114 + . alignment_id 1 ; Query AmOr172JOI ; Align 1678 145 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr167JOI Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 222 Query range: 178 -> 384 Target range: 806538 -> 807587 179 : ValPheIleValGlnPheIleGlnLeuPhePheIleAlaSerSerIleAlaValLeuA : 198 |||!!.:!::!!||| !!:!!.:!!||||||! !||| !:!! !..!! ! !| ValLeuLeuLeuGlnGlyMetHisIlePhePheAsnAlaValAlaHisCysGlyAsnA 806539 : GTGTTACTGCTGCAAGGGATGCACATTTTCTTCAACGCCGTGGCTCACTGCGGCAACG : 806596 199 : spAlaLeuIleIleThrLeuIlePheHisIleGlyGlyGlnIleGluIleLeuHisLy : 217 ||!.!|||.!!.!!!:!|||! .!.|||:!: !!||||||.!!||||||||| ! ! spGlyLeuPhePheSerLeuThrMetHisLeuCysGlyGlnPheGluIleLeuLysMe 806597 : ACGGCCTCTTCTTCAGCCTGACGATGCATCTGTGCGGTCAGTTTGAAATTCTGAAGAT : 806653 218 : sThrLeuLysAsnIleSerIleAsnAspGluLysProGluSerSerArgIleIleIle : 236 !!.!||| !.!.|||..!.!! :!! !! :!!!!!|||! !||| tAsnLeuAlaGluIleGluPhe---------GluAlaIleAlaCysArgLysArgIle 806654 : GAATCTGGCGGAGATCGAGTTC---------GAGGCGATCGCTTGTCGGAAGCGAATC : 806701 237 : LysSerLeuIleAspArgHisTyrArgIleIleIleGlySerGluTyrIleGluSerL : 256 !|||:!: ! ||||||! !!:!:!: :!: !!!!.!. !!:!!|||..! GlyValLeuValLysArgHisCysLysLeuAlaValLeuThrAsnAspLeuGluGlnS 806702 : GGCGTTCTCGTGAAACGACACTGCAAACTGGCGGTGTTGACCAACGATCTCGAGCAGA : 806761 257 : euPheSerTyrIleAlaLeuMetGlnLeuIleCysAsnThrLeuIleIleCysCysIl : 275 !|||||| ||| !|||:!!||||||!!: !:!.!!|||:!!|||||| erPheSerMetIleIleLeuValGlnLeuMetMetSerAlaLeuLeuIleCysValGl 806762 : GCTTCAGTATGATTATTCTGGTGCAACTCATGATGAGTGCGTTGCTAATTTGCGTAGA : 806818 276 : e{G} >>>> Target Intron 1 >>>> {ly}PheLeuIleValValAlaLeu : 283 !{|} 437 bp {||}|||:!!.!!:!!||||||||| u{G}++ ++{ly}PheValPheLeuValAlaLeu 806819 : A{G}gt.........................ag{GT}TTCGTCTTCCTGGTCGCTCTG : 807279 284 : AsnSerAsnLeuLysLeuLeuIleArgIleSerPhe<->PheTyrIleAlaIleThrL : 302 !:!!!!!!. !!!.:!! ! ! !! |||||| .!. :!:.!!:!: !: SerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuMetValThrLeuLeuI 807280 : AGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGA : 807339 303 : euGluAlaPheIlePheSerIleAlaGlyGluTyrLeuSerAsnLysSerLeuSerVa : 321 !!:!! !!:!:!!!:!:!! !||||||.!. |||..!:::::!!!! !..!:! leGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluIl 807340 : TTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAAT : 807396 322 : lSerIleSerAlaTyrGluSerProTrpTyrLeuLeuSerProLysAsnArgGlyVal : 340 !:!! !:!!||||||!!:|||! !||||||! !! ! ! ! ! ! !!! ! eAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAsp 807397 : TGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGAT : 807453 341 : MetIleLeuLeuMetValArgSerGlnArgArgLeuThrIleThrAlaGlyLysPheM : 360 :!::!!|||:!!!!: !|||.!!.!. !! !! ! !||||||||||||||||||: LeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheV 807454 : CTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCG : 807513 361 : etAspLeuSerMetGlnGlyPheAlaAsnValLeuLysAlaSerValSerTyrValSe : 379 !: :!!!:!:!: !||| !.!.:!!||||||||||||! !||||||:!!|| alProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSe 807514 : TCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTC : 807570 380 : rIleLeuTyrAlaMet : 384 |:!!:!! ! !.!||| rValMetLysValMet 807571 : TGTAATGAAGGTAATG : 807587 vulgar: AmOr167JOI 178 384 . KQ414940.1 806538 807587 + 222 M 46 138 G 3 0 M 48 144 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 19 57 G 0 3 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806539 807587 222 + . gene_id 1 ; sequence AmOr167JOI ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 806539 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806539 806821 . + . insertions 0 ; deletions 3 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807258 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807587 . + . insertions 3 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 806539 807587 222 + . alignment_id 1 ; Query AmOr167JOI ; Align 806539 179 138 ; Align 806677 228 144 ; Align 807261 277 57 ; Align 807321 296 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr166JOI Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 263 -> 373 Target range: 807257 -> 807587 264 : GlyTyrLeuIleValIleThrLeuHisLeuGlyAsnAsnIleIleLeuIleLysTyrI : 283 |||!:!:!!.!!:!!:!!.!!||| ! ! !:!!|||:!! ! !:!:!:! !. GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 284 : leMetPheTyrValAlaValCysSerGluAlaPheIleTyrCysPheAlaGlyGluTy : 302 !!:!:.!. |||.!!:!! ! !:!! !!:!:!!|||..!!:!||||||.!. heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 303 : rLeuSerIleLysSerLysLeuIleAlaAspThrAlaTyrGluPheLeuTrpTyrAsn : 321 |||..! ::!!!!:!! !||||||.!..!!||||||!!:! !|||||||||..! rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 322 : MetAsnProAsnGluSerArgLeuLeuIleProIleIleLeuArgAlaGlnArgGlyP : 341 :!! !:!!! !:!!||| !|||:!! !||||||! !|||!.!.!. ! !! CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 342 : heThrPheThrPheGlyLysPheAlaThrLeuSerMetGluSerPheThrAlaIleMe : 360 :! !.!.||| !|||||||||!.! !!:!!!:!:!: !!!|||! !! !|||:! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 361 : tLysAlaSerGlySerTyrMetSerValLeuLeuAlaMet : 373 !||||||||||||||||||:!!||||||:!! !!.!||| uLysAlaSerGlySerTyrLeuSerValMetLysValMet 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: AmOr166JOI 263 373 . KQ414940.1 807257 807587 + 183 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807587 183 + . gene_id 1 ; sequence AmOr166JOI ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807587 183 + . alignment_id 1 ; Query AmOr166JOI ; Align 807258 264 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr160 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 280 -> 387 Target range: 807260 -> 807581 281 : TyrGlnLeuLeuMetThrSerGluSerGlyGluAspMetAsnThrIleHisPheIleI : 300 !:! !!!|||:!:.!! !...!!! !!!::!!:!: .!!:!:... !.!!: PheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheV 807261 : TTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCG : 807318 301 : leTyrSerCysAlaValIleLeuLeuAlaPheCysTyrCysPheLeuGlyGluCysLe : 319 !! ! ! .!!:!!:!::!!! ! !!:! !|||..!!:! !|||.!. || alLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLe 807319 : TTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACT : 807375 320 : uIleAsnGluSerSerGluValGlnMetAlaCysTyrPheThrAsnTrpTyrAspLeu : 338 | :::..!!!!..!|||:!! !...|||..!||| !:!! !|||||| !! ! uGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCys 807376 : CGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGC : 807432 339 : ProGluGlnTyrThrArgSerLeuIlePheCysIleAlaArgAlaGlnLysProLeuT : 358 ! !! !!!. .!!|||..!|||:!!!!. !||| !|||!.!.!...!|||! ! HisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrA 807433 : CACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATC : 807492 359 : yrLeuThrAlaGlyLysPheTyrValPheSerLeuGluThrPheAlaValIleValLy : 377 !:!!||||||||||||||| ! !.!.!:!||| |||||| !! !|||:!!|| rgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLy 807493 : GTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAA : 807549 378 : sAlaSerMetAlaTyrLeuSerValLeuLys : 387 ||||||| :!!||||||||||||:!!||| sAlaSerGlySerTyrLeuSerValMetLys 807550 : AGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: AmOr160 280 387 . KQ414940.1 807260 807581 + 146 M 107 321 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807261 807581 146 + . gene_id 1 ; sequence AmOr160 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807261 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807261 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807261 807581 146 + . alignment_id 1 ; Query AmOr160 ; Align 807261 281 321 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr172JOI Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 145 -> 213 Target range: 32539 -> 32743 146 : IleLeuAspIleLeuIleProLeuAsnHisThrArgProArgThrValProIleGluIle : 165 |||:!!|||:!::!! |||||||||.!.:!!|||! !!.!..!:!!||| !! ! IleIleAspValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGly 32540 : ATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGC : 32597 166 : TyrTyrPheIleAspGlnGlnLysPhePhePhePhePheGlyMetHisLeuAsnIleIle : 185 ! ||||||:!!||||||||||||:::|||... .!!!.!:!!|||:!! ! ! ! GluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThr 32598 : GAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACC : 32657 186 : ThrSerPheGlyGlyLeuValTyrIleAlaIleGluThrIleSerMetGlyMetIleGln : 205 ..!!!!.!!||| ! !||| !! |||:::::::::||| ::: ...::: ValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPhe 32658 : GTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTC : 32717 206 : HisLeuCysGlyLeuLeuLysIle : 213 |||:!!|||!.! !!!!!!.||| HisValCysAlaLysPheAsnIle 32718 : CACGTTTGCGCCAAATTCAATATT : 32743 vulgar: AmOr172JOI 145 213 . KQ415081.1 32539 32743 + 114 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32540 32743 114 + . gene_id 1 ; sequence AmOr172JOI ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32540 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32540 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32540 32743 114 + . alignment_id 1 ; Query AmOr172JOI ; Align 32540 146 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr172JOI Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 144 -> 218 Target range: 253 -> 475 145 : AsnIleLeuAspIleLeuIleProLeuAsnHisThrArgProArgThrValProIleGluIleT : 166 :!!|||||||||||||||:!!||| !|||.!.:!!||| ! !.!! ! ! ! ! !| HisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaT 254 : CATATTTTGGACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCT : 317 167 : yrTyrPheIleAspGlnGlnLysPhePhePhePhePheGlyMetHisLeuAsnIleIleThrSe : 187 ||||||||! !|||:!!!!.|||!:! ! ! !:!.!. !! !|||:!! !:!:! ! yrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLe 318 : ATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCT : 380 188 : rPheGlyGlyLeuValTyrIleAlaIleGluThrIleSerMetGlyMetIleGlnHisLeuCys : 208 ! ! ! ! !! !||||||.!!||| !!!:|||! !! !!!: !:!::!:|||||| !||| uValValPheTyrValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCys 381 : GGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGC : 443 209 : GlyLeuLeuLysIleThrSerPheArgIle : 218 ||||||||| :!::!!.!. :::||| GlyLeuLeuAlaValSerGly***LysIle 444 : GGATTGTTGGCCGTGTCCGGgtaaaaaatt : 475 vulgar: AmOr172JOI 144 218 . LHQN01023902.1 253 475 + 114 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 254 475 114 + . gene_id 1 ; sequence AmOr172JOI ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 254 475 . + . LHQN01023902.1 exonerate:protein2genome:local exon 254 475 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 254 475 114 + . alignment_id 1 ; Query AmOr172JOI ; Align 254 145 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr172JOI Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 135 -> 213 Target range: 5002 -> 5236 136 : ValPhePheLeuAsnValPheGlyAsnAsnIleLeuAspIleLeuIleProLeuAsnHisTh : 156 :!!|||.!.! ! !|||! !::: |||||||||||||||!!:|||||||||.!.|| LeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluTh 5003 : CTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGAC : 5063 157 : rArgProArgThrValProIleGluIleTyrTyrPheIleAspGlnGlnLysPhePhePheP : 177 |||| !!||| ! !! ! ! ! !|||||||||:!!|||:!!.!.|||!:! !!:!! rArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrL 5064 : GCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACT : 5126 178 : hePheGlyMetHisLeuAsnIleIleThrSerPheGlyGlyLeuValTyrIleAlaIleGlu : 197 !..!!! ! !|||:!! !!:!!:!!..! !.!. ! !! !|||!:! !||| !!!: euIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAsp 5127 : TGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGAT : 5186 198 : ThrIleSerMetGlyMetIleGlnHisLeuCysGlyLeuLeuLysIle : 213 .!!! !! !:!! ! :!:|||||| !|||||||||||| ||| AlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 5187 : GCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 5236 vulgar: AmOr172JOI 135 213 . LHQN01025741.1 5002 5236 + 130 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5003 5236 130 + . gene_id 1 ; sequence AmOr172JOI ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5003 5236 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5003 5236 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5003 5236 130 + . alignment_id 1 ; Query AmOr172JOI ; Align 5003 136 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr172JOI Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 135 -> 213 Target range: 5660 -> 5426 136 : ValPhePheLeuAsnValPheGlyAsnAsnIleLeuAspIleLeuIleProLeuAsnHisTh : 156 :!!|||.!.! ! !|||! !::: |||||||||||||||!!:|||||||||.!.|| LeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluTh 5660 : CTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGAC : 5600 157 : rArgProArgThrValProIleGluIleTyrTyrPheIleAspGlnGlnLysPhePhePheP : 177 |||| !!||| ! !! ! ! ! !|||||||||:!!|||:!!.!.|||!:! !!:!! rArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrL 5599 : GCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACT : 5537 178 : hePheGlyMetHisLeuAsnIleIleThrSerPheGlyGlyLeuValTyrIleAlaIleGlu : 197 !..!!! ! !|||:!! !!:!!:!!..! !.!. ! !! !|||!:! !||| !!!: euIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAsp 5536 : TGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGAT : 5477 198 : ThrIleSerMetGlyMetIleGlnHisLeuCysGlyLeuLeuLysIle : 213 .!!! !! !:!! ! :!:|||||| !|||||||||||| ||| AlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 5476 : GCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 5427 vulgar: AmOr172JOI 135 213 . LHQN01028732.1 5660 5426 - 128 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5427 5660 128 - . gene_id 1 ; sequence AmOr172JOI ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5427 5660 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5427 5660 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5427 5660 128 - . alignment_id 1 ; Query AmOr172JOI ; Align 5661 136 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr166JOI Target: LHQN01049708.1 Habropoda laboriosa contig49708, whole genome shotgun sequence Model: protein2genome:local Raw score: 216 Query range: 4 -> 82 Target range: 69 -> 303 5 : AsnThrIleSerArgSerValLysTyrGlyLeuTyrPheAlaAlaSerTrpProGlyAlaSerP : 26 ||||||!!:|||!:!|||||||||!:!||||||:!!|||!.!!.!! !|||||||||.!! !!| AsnThrMetSerGlnSerValLysPheGlyLeuHisPheValGlyIleTrpProGlyThrProP 70 : AATACAATGAGCCAATCTGTTAAGTTTGGTCTACATTTTGTCGGTATTTGGCCAGGAACACCAT : 133 27 : heSerIleLeuHisLysPhePheTrpThrIleIlePheCysThrLeuHisIleSerGlnTyrSe : 47 || !!! !|||||||||.!! !|||..!||| .!...!..!|||!!.! !! !||||||!! heProSerLeuHisLysIleGlyTrpValIleAlaMetAlaValLeuGlnThrTyrGlnTyrAr 134 : TCCCAAGTTTACATAAAATTGGTTGGGTCATAGCGATGGCTGTACTTCAAACTTATCAGTACAG : 196 48 : rTyrLeuIleMetHisTyrLysTyrAspAlaLeuThrGluIleIleAspAsnIleSerIleCys : 68 !|||:!!|||! !|||||||||! !|||::!|||! !! ! !|||||||||:!:|||||| ! gTyrIleIleThrHisTyrLysSerAspSerLeuMetValThrIleAspAsnLeuSerIleThr 197 : ATACATCATTACGCATTATAAATCTGATAGTCTTATGGTCACAATAGATAATTTGAGCATCACC : 259 69 : LeuProHisSerLeuValCysIleLysLeuPheThrAlaTrp : 82 :!!||| !!!!|||||| |||||||||... ...||| MetProPheThrLeuValLeuIleLysLeuIleIleThrTrp 260 : ATGCCATTCACTCTagtgttaattaaattaattattacttgG : 303 vulgar: AmOr166JOI 4 82 . LHQN01049708.1 69 303 + 216 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049708.1 exonerate:protein2genome:local gene 70 303 216 + . gene_id 1 ; sequence AmOr166JOI ; gene_orientation . LHQN01049708.1 exonerate:protein2genome:local cds 70 303 . + . LHQN01049708.1 exonerate:protein2genome:local exon 70 303 . + . insertions 0 ; deletions 0 LHQN01049708.1 exonerate:protein2genome:local similarity 70 303 216 + . alignment_id 1 ; Query AmOr166JOI ; Align 70 5 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr167JOI Target: LHQN01049708.1 Habropoda laboriosa contig49708, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 0 -> 82 Target range: 57 -> 303 1 : MetIleProIleArgSerIleSerHisProIleValIleGlyLeuArgLeuIleGlyIleTrpP : 22 |||||| ! !!.!!!!!!:|||!!. !!:!! !.!!||||||!.!!!!:!!|||||||||| MetIleLeuArgAsnThrMetSerGlnSerValLysPheGlyLeuHisPheValGlyIleTrpP 58 : ATGATATTACGAAATACAATGAGCCAATCTGTTAAGTTTGGTCTACATTTTGTCGGTATTTGGC : 121 23 : roLysSerSerTyrGluIleIleValArgPheMetTrpValIleIleMetMetCysAlaGlnIl : 43 || !!!! !!!:! !! !:!! !!:!.!! ||||||||| ||| !|||! roGlyThrProPheProSerLeuHisLysIleGlyTrpValIleAlaMetAlaValLeuGlnTh 122 : CAGGAACACCATTCCCAAGTTTACATAAAATTGGTTGGGTCATAGCGATGGCTGTACTTCAAAC : 184 44 : ePheGlnTyrGlnTyrIleIleAsnHisIleGlyPheAspAsnLeuAlaAspLeuIleAspSer : 64 !!:!||||||::!|||||||||!..||| ! !! !|||!:!||| !! ! !||||||!:! rTyrGlnTyrArgTyrIleIleThrHisTyrLysSerAspSerLeuMetValThrIleAspAsn 185 : TTATCAGTACAGATACATCATTACGCATTATAAATCTGATAGTCTTATGGTCACAATAGATAAT : 247 65 : ValSerThrThrLeuProTyrSerLeuLeuCysPheLysLeuIleSerPheTrp : 82 :!!|||! !|||:!!|||!:!!!!|||::: ...||||||||| ||| LeuSerIleThrMetProPheThrLeuValLeuIleLysLeuIleIleThrTrp 248 : TTGAGCATCACCATGCCATTCACTCTagtgttaattaaattaattattacttgG : 303 vulgar: AmOr167JOI 0 82 . LHQN01049708.1 57 303 + 167 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049708.1 exonerate:protein2genome:local gene 58 303 167 + . gene_id 1 ; sequence AmOr167JOI ; gene_orientation . LHQN01049708.1 exonerate:protein2genome:local cds 58 303 . + . LHQN01049708.1 exonerate:protein2genome:local exon 58 303 . + . insertions 0 ; deletions 0 LHQN01049708.1 exonerate:protein2genome:local similarity 58 303 167 + . alignment_id 1 ; Query AmOr167JOI ; Align 58 1 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr166JOI Target: LHQN01049752.1 Habropoda laboriosa contig49752, whole genome shotgun sequence Model: protein2genome:local Raw score: 283 Query range: 84 -> 199 Target range: 54 -> 399 85 : AsnThrLeuIleArgAsnIleLeuLeuSerMetGluGluGluCysGlnLysTyrAlaIleMetA : 106 :!!!:!:!!:!!!!!:!!||||||! !!!!|||||||||!!:||||||||||||||| !:!:| HisSerValLeuSerAspIleLeuSerThrMetGluGluAspCysGlnLysTyrAlaAlaValA 55 : CACAGCGTACTTAGTGACATTTTATCAACCATGGAAGAGGATTGTCAGAAATATGCTGCTGTAG : 118 107 : spThrAspAsnLeuIleSerLysThrAlaTyrLeuSerTyrArgLeuThrSerThrIleIleCy : 127 ||! !:!!!!.|||!!:|||||||||!.! ! ||||||::: |||||||||! !|||!!:! spIleAsnLysLeuMetSerLysThrGlyGlnLeuSerPheTyrLeuThrSerIleIleMetSe 119 : ATATAAATAAGTTGATGTCAAAAACCGGACAgctatctttttatttaacaagcATTATTATGTC : 181 128 : sThrCysValAlaSerThrValCysTyrAlaIleGlyIlePheSerHisGlnGluValAsnVal : 148 !:!!! !:!!!.!|||.!!!.!! !||| !! !|||! !.!!... |||||| |||..! rSerTyrMetValSerAlaAlaPheTyrIleThrGlyThrIleGlyPheGlnGluAsnAsnAla 182 : TTCGTATATGGTATCTGCAGCATTTTACATAACTGGTACTATTGgatttcaagaaaataatgCT : 244 149 : ThrSerSerArgGluLeuLeuLeuLysMetAsnLeuProPheAspThrAsnLysSerProIleT : 170 :!! !||||||||||||||||||||||||:!!|||||||||! |||!:!:!!||||||! !| SerValSerArgGluLeuLeuLeuLysMetAspLeuProPheGlyThrSerGluSerProAsnT 245 : TCAGTATCTAGGGAGCTCCTTCTGAAAATGGATTTGCCTTTTGGGACCAGCGAATCGCCGAATT : 310 171 : yrGluPheValValIleIleGlnTyrPheTyrGlnValSerAlaAlaPheValPheGlyValPh : 191 |||||.!!||||||! !! !||| !.!! !!!.||||||||||||!!...!||||||||||| yrGluLeuValValThrThrGlnValLeuIleHisValSerAlaAlaLeuThrPheGlyValPh 311 : ACGAACTTGTAGTAACTACACAAGTCCTTATTCACGTATCAGCGGCCTTAACATTCGGTGTATT : 373 192 : eAlaAlaPheLeuLeuMetIleVal : 199 |::!|||.!!|||||||||:!:||| eSerAlaLeuLeuLeuMetValVal 374 : CAGTGCTCTTCTCTTAATGGTGGTA : 399 vulgar: AmOr166JOI 84 199 . LHQN01049752.1 54 399 + 283 M 115 345 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049752.1 exonerate:protein2genome:local gene 55 399 283 + . gene_id 1 ; sequence AmOr166JOI ; gene_orientation . LHQN01049752.1 exonerate:protein2genome:local cds 55 399 . + . LHQN01049752.1 exonerate:protein2genome:local exon 55 399 . + . insertions 0 ; deletions 0 LHQN01049752.1 exonerate:protein2genome:local similarity 55 399 283 + . alignment_id 1 ; Query AmOr166JOI ; Align 55 85 345 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr167JOI Target: LHQN01049752.1 Habropoda laboriosa contig49752, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 149 -> 205 Target range: 231 -> 399 150 : GlnGluAsnArgSerAsnLeuSerProGluLeuLeuIleLysMetAspLeuProPheThrTyrA : 171 |||||||||...:!!::::!!||| !|||||||||:!:|||||||||||||||||| ! !. GlnGluAsnAsnAlaSerValSerArgGluLeuLeuLeuLysMetAspLeuProPheGlyThrS 232 : caagaaaataatgCTTCAGTATCTAGGGAGCTCCTTCTGAAAATGGATTTGCCTTTTGGGACCA : 295 172 : spGluSerProIleTyrGluTyrValPheIleValGlnPheIleGlnLeuPhePheIleAlaSe : 192 .!|||||||||! !|||||| !||| ! ! !..!||| !!:!! ! ! ! ! |||! erGluSerProAsnTyrGluLeuValValThrThrGlnValLeuIleHisValSerAlaAlaLe 296 : GCGAATCGCCGAATTACGAACTTGTAGTAACTACACAAGTCCTTATTCACGTATCAGCGGCCTT : 358 193 : rSerIleAlaValLeuAspAlaLeuIleIleThrLeuIle : 205 !!!!.!!!.!|||!!!..!||||||:!!:!!! !:!!:!! uThrPheGlyValPheSerAlaLeuLeuLeuMetValVal 359 : AACATTCGGTGTATTCAGTGCTCTTCTCTTAATGGTGGTA : 399 vulgar: AmOr167JOI 149 205 . LHQN01049752.1 231 399 + 109 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049752.1 exonerate:protein2genome:local gene 232 399 109 + . gene_id 1 ; sequence AmOr167JOI ; gene_orientation . LHQN01049752.1 exonerate:protein2genome:local cds 232 399 . + . LHQN01049752.1 exonerate:protein2genome:local exon 232 399 . + . insertions 0 ; deletions 0 LHQN01049752.1 exonerate:protein2genome:local similarity 232 399 109 + . alignment_id 1 ; Query AmOr167JOI ; Align 232 150 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr164FIX Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 315 -> 382 Target range: 824 -> 1194 316 : SerGluAsnIleSerTrpIleAlaTyrAsnSerAsnTrpTyrGluLeuSerIleTyrGluIl : 336 |||:!! |||.!! ! ||||||.!.! ! !||||||!!:||| !! ! !|||! SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSe 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAG : 885 337 : eArgValLeuLeuLeuLeuIleMetArgSerGlnLysProLeuThrLeuThrIleGlyLysT : 357 !!:!:!!|||:!!! !:!!|||:!!|||||||||||| !!!!|||!..|||...||||||: rGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysP 886 : CCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaat : 948 358 : yrMetLysLeuSerLeuGluThrPheAlaAsn >>>> Target Intron 1 >>>> M : 368 :: ...||||||||||||!:!|||.!! ! 169 bp ! heSerSerLeuSerLeuGluSerPheThrAla++ ++I 949 : tttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.........................agA : 1150 369 : etLeuLysIleSerAlaSerTyrAlaSerValLeuTyrAlaLeu : 382 !::!!|||:!!|||||||||||| !||||||||| !|||:!! leMetLysValSerAlaSerTyrIleSerValLeuLeuAlaVal 1151 : TCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTG : 1194 vulgar: AmOr164FIX 315 382 . LHQN01050112.1 824 1194 + 134 M 52 156 5 0 2 I 0 165 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 1194 134 + . gene_id 1 ; sequence AmOr164FIX ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 825 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1194 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1194 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 1194 134 + . alignment_id 1 ; Query AmOr164FIX ; Align 825 316 156 ; Align 1150 368 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr166JOI Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 241 Query range: 306 -> 373 Target range: 824 -> 1194 307 : SerLysLeuIleAlaAspThrAlaTyrGluPheLeuTrpTyrAsnMetAsnProAsnGluSe : 327 |||:!!||||||!.!:!!||||||||||||||||||||||||:!!:!:..! !!!.!||||| SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSe 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAG : 885 328 : rArgLeuLeuIleProIleIleLeuArgAlaGlnArgGlyPheThrPheThrPheGlyLysP : 348 |!:!||||||||||||:!!|||||||||:!!|||!:!||||||||||||||||||||||||| rGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysP 886 : CCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaat : 948 349 : heAlaThrLeuSerMetGluSerPheThrAla >>>> Target Intron 1 >>>> I : 359 ||::::::||||||:!!||||||||||||||| 169 bp | heSerSerLeuSerLeuGluSerPheThrAla++ ++I 949 : tttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.........................agA : 1150 360 : leMetLysAlaSerGlySerTyrMetSerValLeuLeuAlaMet : 373 ||||||||!.!|||!.!||||||!!:|||||||||||||||:!! leMetLysValSerAlaSerTyrIleSerValLeuLeuAlaVal 1151 : TCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTG : 1194 vulgar: AmOr166JOI 306 373 . LHQN01050112.1 824 1194 + 241 M 52 156 5 0 2 I 0 165 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 1194 241 + . gene_id 1 ; sequence AmOr166JOI ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 825 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1194 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1194 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 1194 241 + . alignment_id 1 ; Query AmOr166JOI ; Align 825 307 156 ; Align 1150 359 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 322 -> 393 Target range: 204721 -> 204934 323 : LeuThrPheAsnMetPheLeuLeuCysTyrIleGlyAspLeuLeuIleGlnLysSerG : 342 ||| ||| :::::!! !||| ...... ||| !||||||! LeuPhePheProLeuTyrTyrLeuSerSerPheSerIleSerLeuSerIleLysSerG 204722 : cttttctttcctctatACTACTTgtcttcattttcaatttctttgtCGATAAAGTCCG : 204779 343 : lyAsnIleGlyValValValPheMetIleAspTrpPheHisLeuProThrLysThrIl : 361 !.!.:!! !|||!.!!.!!:! !!!:|||!!.:!!||| !:!!!!.! ! luGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsnLysAl 204780 : AAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAACAAGGC : 204836 362 : eGlnAsnLeuIleLeuIleMetAlaMetSerAsnAsnProAlaLysLeuThrValGly : 380 :!!!:!||||||||||||||||||! !:!!.!.!..||| ! ||||||!..||| aLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuThrAlaGly 204837 : GAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGcagga : 204893 381 : ArgIleValAspLeuSerLeuSerThrPheGlyAsnVal : 393 :::::: ::!!!!:!! !|||||| !!|||||| LysLeuPheProMetThrMetLeuThrPheCysAsnVal 204894 : aaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: AfOr56 322 393 . KQ414617.1 204721 204934 + 100 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204722 204934 100 + . gene_id 1 ; sequence AfOr56 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204722 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204722 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204722 204934 100 + . alignment_id 1 ; Query AfOr56 ; Align 204722 323 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr69 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 727 Query range: 118 -> 366 Target range: 3155397 -> 3156413 119 : AlaArgLeuAsnAlaIleCysTyrAlaIleLeuValGluLeuSerValMetSerLe : 137 ..!||| !!:!:!!! !! !||||||||||||||||||! !!!!||||||!!!|| CysArgArgSerSerThrTyrTyrAlaIleLeuValGluSerThrValMetThrLe 3155398 : TGCAGAAGAAGCTCAACCTATTACGCGATTCTGGTCGAATCGACGGTGATGACTTT : 3155452 138 : uSerPheGlyGlyLeuLeuLysAlaGluSerHisLysLeuProTyrArgMetTrpL : 156 ||||||||||!.!||||||||| !!||||||!.! ||||||||||||!!:|||| uSerPheGlyAlaLeuLeuLysProGluSerArgProLeuProTyrArgIleTrpL 3155453 : GTCTTTCGGTGCACTGTTGAAACCAGAATCACGTCCTTTACCGTATCGAATTTGGC : 3155509 157 : euProTyrAsnTyrThrSerLeuSerAlaTyrThrPheIleTyrThrGlnGlnVal : 174 |||||! !||||||||| !!|||! !.!!||| !! |||||||||! ||| ! euProCysAsnTyrThrProLeuIleThrTyrCysSerIleTyrThrLeuGlnCys 3155510 : TACCTTGCAATTACACCCCGTTAATTACTTACTGTTCGATTTACACTCTCCAATGT : 3155563 175 : ValSerLeuIleValSerAlaMetIleHisValAlaCysAspSerPheIleTrpAl : 193 |||:!!||| !:!!|||||||||!!:||||||||||||||||||!!.|||!! !. ValAlaLeuAlaLeuSerAlaMetMetHisValAlaCysAspSerLeuIleCysGl 3155564 : GTGGCACTCGCTCTAAGCGCTATGATGCACGTCGCCTGCGACAGTTTGATCTGCGG : 3155620 194 : aLeuLeuMetHisIleCysAsnGlnIleGluIlePheAsnCysArgLeuLysLysI : 212 !||||||:!:|||! !! !..!||||||||||||.!!..!|||||||||||| | yLeuLeuLeuHisThrTyrGlyGlnIleGluIleLeuGlyCysArgLeuLysThrI 3155621 : CCTGCTGTTACACACTTACGGCCAGATCGAGATCCTCGGTTGTCGTCTGAaaacga : 3155677 213 : leLysAspHisGluLysAsnGluValThrLysLeuCysIleHisTyrHisAsnLeu : 230 |||||::::::||| ::::!!..!:!!|||||||||:!!!.!|||:!!|||||| leLysGluAsnGlu---SerLysThrSerLysLeuCysValArgTyrAsnAsnLeu 3155678 : taaaagaaaacgag---agtAAGACGTCCAAGTTGTGCGTTCGTTACAACAACCTT : 3155728 231 : IleTyr{Ar} >>>> Target Intron 1 >>>> {g}LeuAlaThrThrIl : 238 ||||||{||} 69 bp {|}!!!.!!.!!! !|| IleTyr{Ar}++ ++{g}PheThrAlaMetIl 3155729 : ATCTAT{CG}gt.........................ag{A}TTCACCGCTATGAT : 3155821 239 : eAsnGluGlnPheLysMetValIlePheValGlnPheThrValSerThrLeuThrI : 257 |||||||||||||:!!|||!.!||||||..!||||||.!!||||||||||||.!!| eAsnGluGlnPheGluMetAlaIlePheThrGlnPheAlaValSerThrLeuAlaI 3155822 : AAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGTGAGTACGCTGGCGA : 3155878 258 : leCysValAsnLeuTyrIleLeuMetGlyThrGlnIleThrPheGluArgIleMet : 275 ||||| !!|||||||||:!!|||! |||:!!.!.:!:||| ||| !:!! leCysPheAsnLeuTyrLeuLeuThrGlySerAspValThrProIleArgTyrVal 3155879 : TATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGACGCCGATTAGGTATGTG : 3155932 276 : GlnLeuAlaIleTyrSerSerCysMetLeuThrGlnIleTyrIlePheCysTrpTy : 294 :!!:!! !!!:|||||||||||||||||||||||||||!:!|||!:!|||||||| GluIleIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysTrpTy 3155933 : GAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTGGTA : 3155989 295 : rGlyAsnGluValLysLeuLys >>>> Target Intron 2 >>>> SerLe : 303 |||||||||||||||||||||| 73 bp ||||| rGlyAsnGluValLysLeuLys++ ++SerLe 3155990 : CGGGAACGAAGTTAAGCTGAAGgt.........................agAGCCT : 3156089 304 : uAspIleSerAspMetIlePheLysLeuAspTrpProAspLeuAspAsnThrThrL : 322 |!!:||||||:!!||||||||| ! ||||||||| !! !!!|||!!..!!|||| uGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAlaThrL 3156090 : CGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGCTACAA : 3156146 323 : ysHisAspLeuLeuMetIleMetMetArgAlaSerTyrProIleGluMetThrSer : 340 ||!..:!!:!!|||! !!:|||||||||||||||! |||||||||!!:! !||| ysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleIleSer 3156147 : AACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCATCAGC : 3156200 341 : ValHisValIleThrMetAsnLeuAspSerPheValIle >>>> Target Int : 354 |||!.!|||:!!:!!:!!|||||||||||||||||| ! 133 b ValArgValLeuSerValAsnLeuAspSerPheValAla++ 3156201 : GTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt............... : 3156244 355 : ron 3 >>>> LeuLeuLysThrSerTyrSerAlaTyrAsnLeuLeuGln : 366 p ||||||||||||||||||||||||||||||:!!|||||| ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGln 3156245 : ..........agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAA : 3156413 vulgar: AfOr69 118 366 . KQ414646.1 3155397 3156413 + 727 M 98 294 G 1 0 M 15 45 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 68 204 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 129 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155398 3156413 727 + . gene_id 1 ; sequence AfOr69 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3155398 3155738 . + . KQ414646.1 exonerate:protein2genome:local exon 3155398 3155738 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3155739 3155740 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3155739 3155807 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3155806 3155807 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3155808 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155808 3156012 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156013 3156014 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156013 3156085 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3156084 3156085 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156086 3156241 . + . KQ414646.1 exonerate:protein2genome:local exon 3156086 3156241 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156242 3156243 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156242 3156374 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3156373 3156374 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156375 3156413 . + . KQ414646.1 exonerate:protein2genome:local exon 3156375 3156413 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155398 3156413 727 + . alignment_id 1 ; Query AfOr69 ; Align 3155398 119 294 ; Align 3155692 218 45 ; Align 3155809 234 204 ; Align 3156086 302 156 ; Align 3156375 354 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr69 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 491 Query range: 0 -> 303 Target range: 3149023 -> 3150814 1 : MetGlnLeuLeuArgThrIleTyrHisLeuLeuThrSerCysAlaCysTrpArgPr : 19 ||| :!!|||||| !! !!:!:!!:!!||||||! !|||!.!||||||||||| MetAlaIleLeuArgProAlaPheAsnIleLeuThrIleCysGlyCysTrpArgPr 3149024 : ATGGCTATCTTACGGCCAGCTTTCAACATACTGACGATCTGCGGATGCTGGAGGCC : 3149078 20 : oProPheLeuSerProLeuLys<->AsnLeuAlaTyrThrValTyrTyrCysTyrV : 37 | !! ! ! !! !! !::: !!. !||||||! !|||||| !:!| oCysSerCysArgThrThrArgAlaLysAlaAlaTyrIleValTyrThrMetPheV 3149079 : GTGCTCGTGCCGAACGACACGCGCCAAGGCCGCGTACATCGTTTACACGATGTTCG : 3149135 38 : alIleLeuLeuIleTyrGlyAlaThrPheCysThrPheValAspLeuLeuLeuIle : 55 ||:!!||||||:!::!!.!! ! !.!. ||| ::::::::!|||! ! alValLeuLeuLeuHisSerPheCysIleSerGlnPhePheAsnValIleLeuAsn 3149136 : TGGTACTTTTATTGCACAGCTTCTGCATctcgcaatttttcaacgtgatACTGAAC : 3149189 56 : ValGluThrGluAspGluPheCysAspAsnPheTyrLeuThrLeuAlaIlePheIl : 74 :!!..!|||! !||||||.!. !!!!:!:!||||||:!! !:!!||| ! !!:! LeuArgThrAlaAspGluLeuSerGluSerPheTyrMetPheIleAlaSerValLe 3149190 : TTGAGAACGGCGGACGAGCTGAGCGAGAGTTTCTACATGTTCATCGCGTCCGTTCT : 3149246 75 : eSerCysHisLysMetTyrSerMetLeuValAsnArgGluAsnIleIleLeuIleT : 93 :|||||| !|||!!: !!!!:!!|||..!|||!.!! !!:!||| :!!:!! uSerCysCysLysIleValThrLeuLeuThrAsnHisGlySerIleGluIleLeuA 3149247 : GTCCTGCTGCAAGATCGTCACGCTGCTGACGAACCACGGAAGCATCGAGATCCTCC : 3149303 94 : hrSerMetLeuGluSerLysProPheGlnProGluThrGluGluGluMetAsnMet : 111 !!!!! ||||||..!:!!|||! !:!!|||! !!:!! |||||| !!!: rgArgArgLeuGluGluGluProCysLysProValSerAlaGluGluAlaValIle 3149304 : GGAGGAGACTGGAGGAGGAGCCGTGTAAACCTGTGAGCGCCGAGGAGGCTGTCATA : 3149357 112 : ArgAsnLysCysAspLysGlnAla{Ar} >>>> Target Intron 1 >>>> : 120 !:!!:!|||! !|||!:!.!. !{ !} 649 bp GlnSerLysPheAspArgAsnIle{Gl}++ + 3149358 : CAGAGTAAATTCGACAGAAACATC{GG}gt.........................a : 3150033 121 : {g}LeuAsnAlaIleCysTyrAlaIleLeuValGluLeuSerValMetSerLeuS : 138 {!}! ! .!!|||! !|||.!!|||||||||||||||!!!|||:!:!!!:!!! +{y}SerValThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCysMetI 3150034 : g{G}TCGGTGACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTGTATGA : 3150087 139 : erPheGlyGlyLeuLeu<->LysAlaGluSerHisLysLeuProTyrArgMetTrp : 155 !.!!..!..!|||||| ! !.!...!!..:!!||| !!|||||| ||| leLeuSerSerLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgAlaTrp 3150088 : TCCTCTCTTCGTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAGCCTGG : 3150141 156 : LeuProTyrAsnTyrThrSerLeuSerAlaTyrThrPheIleTyrThrGlnGlnVa : 174 ||||||!:!:!!|||:!! !! !!!! !||| !.!! |||..!!!.|||:! LeuProPheAspTyrSerLeuProThrTyrTyrTyrIleAlaTyrValHisGlnIl 3150142 : CTGCCCTTCGATTACTCTCTGCCAACTTACTATTACATCGCGTACGTTCATCAGAT : 3150198 175 : lValSerLeuIleValSerAlaMetIleHisValAlaCysAspSerPheIleTrpA : 193 !|||:!!||||||! !!!!:!!:!: :!!|||||||||||| !.!!|||!! ! eValAlaLeuIleGlyThrSerLeuSerAsnValAlaCysAspValIleIleCysG 3150199 : CGTCGCGCTGATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCATCTGCG : 3150255 194 : laLeuLeuMetHisIleCysAsnGlnIleGluIlePheAsnCysArgLeuLysLys : 211 .!||||||:!:||| !|||..!||| ||||||.!!!!. !|||:!!|||:!! lyLeuLeuValHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMetLysGlu 3150256 : GGTTGCTCGTTCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATGAAGGAG : 3150309 212 : IleLysAspHisGluLysAsnGluValThrLysLeuCysIleHisTyrHisAsnLe : 230 !!:! !.!..!.:!!!:! .!.:!! !|||:!! :!!!.!!:!|||:!!! MetThrGlnGluGlnArgProAsnIleGlyLysIle---ValArgPheHisAspTy 3150310 : ATGACGCAGGAACAGAGGCCGAATATCGGGAAAATC---GTTCGTTTCCACGATTA : 3150363 231 : uIleTyr{Ar} >>>> Target Intron 2 >>>> {g}LeuAlaThrThrI : 238 !:!!|||{ !} 230 bp {!}! !!.! !|||! rLeuTyr{Gl}++ ++{y}TyrValPheThrM 3150364 : TCTTTAC{GG}gt.........................ag{G}TACGTTTTCACGA : 3150617 239 : leAsnGluGlnPheLysMetValIlePheValGlnPheThrValSerThrLeuThr : 256 !:.!.|||:!!|||!:! !:!!||| !||||||.!! ! !|||||||||..! etGlnGluLysPheArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuVal 3150618 : TGCAAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGGTA : 3150671 257 : IleCysValAsnLeuTyrIleLeuMetGlyThrGlnIleThrPheGluArgIleMe : 275 :!:||| !!! !|||||| !||| !..!|||! !! ! !...!:! !:! ValCysPheIleLeuTyrGluLeuAlaAsnThrProProIleSerSerLysTyrLe 3150672 : GTGTGTTTCATCCTGTACGAATTGGCGAACACGCCTCCAATCAGCTCCAAGTACCT : 3150728 276 : tGlnLeuAlaIleTyrSerSerCysMetLeuThrGlnIleTyrIlePheCysTrpT : 294 !|||!!!!.!:!:||| !:!!||||||:!!|||||||||!:!.!!!:!||||||| uGlnPheValLeuTyrLeuAlaCysMetMetThrGlnIlePhePheTyrCysTrpT 3150729 : GCAATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATCTTCTTTTACTGCTGGT : 3150785 295 : yrGlyAsnGluValLysLeuLysSerLeu : 303 |||||.!.:!!:!!||||||||| !||| yrGlyGluGlnLeuLysLeuLysValLeu 3150786 : ACGGCGAGCAGTTGAAACTGAAGGTACTG : 3150814 vulgar: AfOr69 0 303 . KQ414646.1 3149023 3150814 + 491 M 26 78 G 0 3 M 93 279 S 0 2 5 0 2 I 0 645 3 0 2 S 1 1 M 23 69 G 0 3 M 80 240 G 1 0 M 8 24 S 0 2 5 0 2 I 0 226 3 0 2 S 1 1 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3149024 3150814 491 + . gene_id 2 ; sequence AfOr69 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3149024 3149385 . + . KQ414646.1 exonerate:protein2genome:local exon 3149024 3149385 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3149386 3149387 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3149386 3150034 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150033 3150034 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150035 3150373 . + . KQ414646.1 exonerate:protein2genome:local exon 3150035 3150373 . + . insertions 3 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3150374 3150375 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150374 3150603 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3150602 3150603 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150604 3150814 . + . KQ414646.1 exonerate:protein2genome:local exon 3150604 3150814 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3149024 3150814 491 + . alignment_id 2 ; Query AfOr69 ; Align 3149024 1 78 ; Align 3149105 27 279 ; Align 3150036 121 69 ; Align 3150108 144 240 ; Align 3150348 225 24 ; Align 3150605 234 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr69 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 303 Query range: 205 -> 370 Target range: 3164897 -> 3165545 206 : AsnCysArgLeuLysLysIleLysAspHisGluLysAsnGluValThrLysLeuCy : 224 ||||||::::::|||!!. !!:!.!. ! |||!...!. !... ... AsnCysLysValLysAsn***ArgGlnLysGluSerGluThrThrLeuSerTrpLy 3164898 : aattgtaaagtaaAGAATTAAAGACAGAAAGAAAGCGAGACAACcctttcgtggaa : 3164952 225 : sIleHisTyrHisAsnLeu--IleTyrArgLeuAlaThrThrIleAsnGluGlnPh : 242 ||||||||| ! !! !##! !! !|||!!!:!!! !! !:!:||||||:!!|| sIleHisTyrValAlaCys##ThrCysArgPheSerLysLysValAsnGluGluPh 3164953 : aattcacTATGTTGCTTGCAAACTTGCAGATTTTCGAAAAAGGTGAACGAAGAATT : 3165008 243 : eLysMetValIlePheValGlnPheThrValSerThrLeuThrIleCysValAsnL : 261 ||||:!!:!!:!:.!! !|||||| !:!!|||! !! !..!|||||| !!|||| eLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIleCysPheAsnL 3165009 : CAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTTCAATC : 3165065 262 : euTyrIleLeuMetGlyThrGlnIleThrPheGluArgIleMetGlnLeuAlaIle : 279 ||||| !:!!! !! !:!!!!: :::...::::::::: !:!! euTyrArgMetThrGlnIleLysMetAsp---ThrLysPheValGluIleIleLeu 3165066 : TTTACCGAATGACACAGATCAAAATGGAc---acgaaattcgtcgaaatcaTACTC : 3165116 280 : TyrSerSerCysMetLeuThrGlnIleTyrIlePheCysTrpTyrGlyAsnGluVa : 298 ||||||! !|||! :!!|||||||||!:! !!:!|||||||||||||||||||| TyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGluVa 3165117 : TACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGGCAACGAAGT : 3165173 299 : lLysLeuLys >>>> Target Intron 1 >>>> SerLeuAspIleSerAs : 307 ||||! !||| 80 bp ||||||.!.:!! !! ! lLysHisLys++ ++SerLeuGlnLeuProTy 3165174 : GAAACATAAGgt.........................agAGCCTCCAACTTCCATA : 3165280 308 : pMetIlePheLysLeuAspTrpProAspLeuAspAsnThrThrLysHisAspLeuL : 326 !||||||||| ! !|||||| !!..!|||:!!|||!.!..!! ...! |||| rMetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArgAlaLeuL 3165281 : CATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGAGCACTTT : 3165337 327 : euMetIleMetMetArgAlaSerTyrProIleGluMetThrSerValHisValIle : 344 ||!!:!!:|||! |||||| ! |||||||||.!.||||||:!!||||||:!! euIleMetMetArgArgAlaValArgProIleGluPheThrSerIleHisValVal 3165338 : TAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCACGTTGTC : 3165391 345 : ThrMetAsnLeuAspSerPheValIle >>>> Target Intron 2 >>>> : 354 :!!:!!||||||!!:||||||:!! ! 74 bp SerValAsnLeuGluSerPheMetAla++ ++ 3165392 : TCTGTGAATCTCGAATCCTTCATGGCAgt.........................ag : 3165493 355 : LeuLeuLysThrSerTyrSerAlaTyrAsnLeuLeuGlnSerAsnArgGlu : 370 :!!:!!||||||||||||||||||!:!|||:!!:!!|||..!!:!!:!:!! ValIleLysThrSerTyrSerAlaPheAsnMetIleGlnGlnSerLysGln 3165494 : GTAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAACAAAGCAAACAA : 3165545 vulgar: AfOr69 205 370 . KQ414646.1 3164897 3165545 + 303 M 25 75 F 0 2 M 40 120 G 1 0 M 30 90 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164898 3165545 303 + . gene_id 3 ; sequence AfOr69 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3164898 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164898 3165184 . + . insertions 0 ; deletions 1 ; frameshifts 2 KQ414646.1 exonerate:protein2genome:local splice5 3165185 3165186 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165185 3165264 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3165263 3165264 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165265 3165420 . + . KQ414646.1 exonerate:protein2genome:local exon 3165265 3165420 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165421 3165422 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165421 3165494 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3165493 3165494 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165495 3165545 . + . KQ414646.1 exonerate:protein2genome:local exon 3165495 3165545 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164898 3165545 303 + . alignment_id 3 ; Query AfOr69 ; Align 3164898 206 75 ; Align 3164975 231 120 ; Align 3165095 272 90 ; Align 3165265 302 156 ; Align 3165495 354 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr69 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 272 Query range: 228 -> 368 Target range: 3178372 -> 3179020 229 : AsnLeuIleTyrArgLeuAlaThrThrIleAsnGluGlnPheLysMetValIlePh : 247 |||...||| |||!!!.!! !|||:!:||| !|||:!! :!!||||| AsnPheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePh 3178373 : aatttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTT : 3178427 248 : eValGlnPheThrValSerThrLeuThrIleCysValAsnLeuTyrIleLeuMetG : 266 |:!!||||||:!!:!!|||:!! !..!:!:|||:!!!:!:!!|||! !:!! ! eLeuGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerT 3178428 : CCTGCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGA : 3178484 267 : lyThrGlnIleThrPheGluArgIleMetGlnLeuAlaIleTyrSerSerCysMet : 284 !! !.!. ! ! ! !!.!.!!:!: !! !||| !|||! !!!!|||||| hrIleAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMet 3178485 : CGATTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATG : 3178538 285 : LeuThrGlnIleTyrIlePheCysTrpTyrGlyAsnGluValLysLeuLys >>> : 302 |||||||||:!:|||:!!!:!||||||!:!||||||||||||! !|||||| LeuThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys++ 3178539 : CTCACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAGgt... : 3178594 303 : > Target Intron 1 >>>> SerLeuAspIleSerAspMetIlePheLysLe : 312 155 bp ||| ! ! :!!.!!!!: |||!:!:!!:! ++SerGluLysValGlyGluAlaIleTyrGluMe 3178595 : ......................agAGCGAAAAAGTAGGCGAAGCTATTTACGAGAT : 3178777 313 : uAspTrpProAspLeuAspAsnThrThrLysHisAspLeuLeuMetIleMetMetA : 331 !|||||| !!! ||| !!.! !! !!:! ! |||||||||:!!|||||| !| tAspTrpThrAlaLeuProThrAspIleArgLysAspLeuLeuLeuIleMetAlaA 3178778 : GGACTGGACGGCACTTCCCACCGATATAAGGAAAGATCTATTGCTGATCATGGCGA : 3178834 332 : rgAlaSerTyrProIleGluMetThrSerValHisValIleThrMetAsnLeuAsp : 349 ||:!!!.! |||:!!:!!|||||||||! !||||||:!!..!:!:::! !!!: rgSerLysArgProValLysMetThrSerGlyHisValValValLeuSerAlaGlu 3178835 : GATCAAAACGACCTGTTAAAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAA : 3178888 350 : SerPheValIle >>>> Target Intron 2 >>>> LeuLeuLysThrSer : 358 ||||||:!! ! 73 bp :!!:!!|||! !!!! SerPheMetSer++ ++IleMetLysIleThr 3178889 : TCATTTATGTCTgt.........................agaTCATGAAGATAACG : 3178988 359 : TyrSerAlaTyrAsnLeuLeuGlnSerAsn : 368 ||||||:!!|||||||||||| !!:!::! TyrSerSerTyrAsnLeuLeuThrAsnSer 3178989 : TATTCGTCGTACAACCTCTTGACAAATTCT : 3179020 vulgar: AfOr69 228 368 . KQ414646.1 3178372 3179020 + 272 M 73 219 5 0 2 I 0 151 3 0 2 M 52 156 5 0 2 I 0 69 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178373 3179020 272 + . gene_id 4 ; sequence AfOr69 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3178373 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178373 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178592 3178593 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3178592 3178746 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3178745 3178746 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3178747 3178902 . + . KQ414646.1 exonerate:protein2genome:local exon 3178747 3178902 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178903 3178904 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3178903 3178975 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3178974 3178975 . + . intron_id 1 ; splice_site "ag" KQ414646.1 exonerate:protein2genome:local cds 3178976 3179020 . + . KQ414646.1 exonerate:protein2genome:local exon 3178976 3179020 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178373 3179020 272 + . alignment_id 4 ; Query AfOr69 ; Align 3178373 229 219 ; Align 3178747 302 156 ; Align 3178976 354 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr69 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 236 Query range: 205 -> 352 Target range: 3158369 -> 3158889 206 : AsnCysArgLeuLysLysIleLysAspHisGluLysAsnGluValThrLysLeuCy : 224 ||||||::::::|||!!. !!:!.!. ! |||!...!. !... ... AsnCysLysValLysAsn***ArgGlnLysGluSerGluThrThrLeuSerTrpLy 3158370 : aattgtaaagtaaAGAATTAAAGACAGAAAGAAAGCGAGACAACcctttcgtggaa : 3158424 225 : sIleHisTyrHisAsnLeu--IleTyrArgLeuAlaThrThrIleAsnGluGlnPh : 242 ||||||||| ! !! !##! !! !|||!!!:!!! !! !:!:||||||:!!|| sIleHisTyrValAlaCys##ThrCysArgPheSerLysLysValAsnGluGluPh 3158425 : aattcacTATGTTGCTTGCAAACTTGCAGATTTTCGAAAAAGGTGAACGAAGAATT : 3158480 243 : eLysMetValIlePheValGlnPheThrValSerThrLeuThrIleCysValAsnL : 261 ||||:!!:!!:!:.!! !|||||| !:!!|||! !! !..!|||||| !!|||| eLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIleCysPheAsnL 3158481 : CAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTTCAATC : 3158537 262 : euTyrIleLeuMetGlyThrGlnIleThrPheGluArgIleMetGlnLeuAlaIle : 279 ||||| !:!!! !! !:!!!!: :::...::::::::: !:!! euTyrArgMetThrGlnIleLysMetAsp---ThrLysPheValGluIleIleLeu 3158538 : TTTACCGAATGACACAGATCAAAATGGAc---acgaaattcgtcgaaatcaTACTC : 3158588 280 : TyrSerSerCysMetLeuThrGlnIleTyrIlePheCysTrpTyrGlyAsnGluVa : 298 ||||||! !|||! :!!|||||||||!:! !!:!|||||||||||||||||||| TyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGluVa 3158589 : TACTCTTTCTGCACTATCACGCAGATATTTTACTATTGTTGGTACGGCAACGAAGT : 3158645 299 : lLysLeu{L} >>>> Target Intron 1 >>>> {ys}SerLeuAspIleS : 306 |||| {:} 83 bp {!!}||||||.!.:!! lLys---{G}-+ --{lu}SerLeuGlnLeuP 3158646 : GAAA---{G}at.........................gt{AG}AGCCTCCAACTTC : 3158749 307 : erAspMetIlePheLysLeuAspTrpProAspLeuAspAsnThrThrLysHisAsp : 324 !! !!||||||||| ! !|||||| !!..!|||:!!|||!.!..!! ...! roTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArgAla 3158750 : CATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGAGCA : 3158803 325 : LeuLeuMetIleMetMetArgAlaSerTyrProIleGluMetThrSerValHisVa : 343 ||||||!!:!!:|||! |||||| ! |||||||||.!.||||||:!!||||| LeuLeuIleMetMetArgArgAlaValArgProIleGluPheThrSerIleHisVa 3158804 : CTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCACGT : 3158860 344 : lIleThrMetAsnLeuAspSerPheVal : 352 |:!!:!!:!!||||||!!:||||||:!! lValSerValAsnLeuGluSerPheMet 3158861 : TGTCTCTGTGAATCTCGAATCCTTCATG : 3158889 vulgar: AfOr69 205 352 . KQ414646.1 3158369 3158889 + 236 M 25 75 F 0 2 M 40 120 G 1 0 M 28 84 G 1 0 S 0 1 5 0 2 I 0 79 3 0 2 S 1 2 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158370 3158889 236 + . gene_id 5 ; sequence AfOr69 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3158370 3158651 . + . KQ414646.1 exonerate:protein2genome:local exon 3158370 3158651 . + . insertions 0 ; deletions 2 ; frameshifts 2 KQ414646.1 exonerate:protein2genome:local splice5 3158652 3158653 . + . intron_id 1 ; splice_site "AT" KQ414646.1 exonerate:protein2genome:local intron 3158652 3158734 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3158733 3158734 . + . intron_id 0 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local cds 3158735 3158889 . + . KQ414646.1 exonerate:protein2genome:local exon 3158735 3158889 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3158370 3158889 236 + . alignment_id 5 ; Query AfOr69 ; Align 3158370 206 75 ; Align 3158447 231 120 ; Align 3158567 272 84 ; Align 3158737 302 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr69 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 206 Query range: 231 -> 352 Target range: 3160720 -> 3162707 232 : TyrArgLeuAlaThrThrIleAsnGluGlnPheLysMetValIlePheValGlnPh : 250 !:!|||!!!||| !! !||||||! !:!!|||!..!!:..!!!: !..!||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3160721 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3160775 251 : eThrValSerThrLeuThrIleCysValAsnLeuTyrIleLeuMetGlyThrGlnI : 269 | !|||!!!|||:!!|||!!:||| !!||||||!:! !|||! !|||:!!: eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3160776 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3160832 270 : leThrPheGluArgIleMetGlnLeuAlaIleTyrSerSerCysMetLeuThrGln : 287 !: !:!..!!:!:!!:!: !||| ! !:!! ! ! !!:!!!!!.!!||| al---TyrSerGlnValLeuAlaLeuIleProPheMetValSerValPheAlaGln 3160833 : TG---TATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAG : 3160883 288 : IleTyrIlePheCysTrpTyrGlyAsnGluValLysLeuLysSerLeuAspIleSe : 306 |||!:! !! !||||||||||||||||||..!|||:!!||| !! !||| !!! IlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLysValArgAspGlnTh 3160884 : ATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGGTACGTGATCAAAC : 3160940 307 : rAspMetIlePheLysLeu >>>> Target Intron 1 >>>> AspTrpPr : 315 !|||.!.:::|||...::: 1627 bp |||||| ! rAspPheLeuPheSerIle-+ -+AspTrpTh 3160941 : AGACTTCttattctcaatttt.........................tgGACTGGAC : 3162594 316 : oAspLeuAspAsnThrThrLysHisAspLeuLeuMetIleMetMetArgAlaSerT : 334 ! !!!|||!!..!!.!!|||!..:!! !|||! !!:|||||||||||||||! rProPheAspLysAlaAlaLysArgAsnThrLeuThrMetMetMetArgAlaSerS 3162595 : ACCATTCGATAAAGCTGCTAAACGAAATACTCTAACCATGATGATGCGTGCATCGT : 3162651 335 : yrProIleGluMetThrSerValHisValIleThrMetAsnLeuAspSerPheVal : 352 !! !||||||!!:! !||||||!.!|||:!!:!!:!!|||||||||||||||||| erLeuIleGluIleIleSerValArgValLeuSerValAsnLeuAspSerPheVal 3162652 : CTCTGATCGAAATCATCAGCGTTCGTGTGCTCTCCGTGAATCTAGATTCGTTCGTC : 3162705 vulgar: AfOr69 231 352 . KQ414646.1 3160720 3162707 + 206 M 38 114 G 1 0 M 42 126 5 0 2 I 0 1623 3 0 2 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160721 3162707 206 + . gene_id 6 ; sequence AfOr69 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3160721 3160960 . + . KQ414646.1 exonerate:protein2genome:local exon 3160721 3160960 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3160961 3160962 . + . intron_id 1 ; splice_site "tt" KQ414646.1 exonerate:protein2genome:local intron 3160961 3162587 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3162586 3162587 . + . intron_id 0 ; splice_site "TG" KQ414646.1 exonerate:protein2genome:local cds 3162588 3162707 . + . KQ414646.1 exonerate:protein2genome:local exon 3162588 3162707 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160721 3162707 206 + . alignment_id 6 ; Query AfOr69 ; Align 3160721 232 114 ; Align 3160835 271 126 ; Align 3162588 313 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr69 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 199 Query range: 233 -> 365 Target range: 3180463 -> 3180946 234 : LeuAlaThrThrIleAsnGluGlnPheLysMetValIlePheValGlnPheThrVa : 252 |||||| !! !!!:|||!!:....!.:!!:!!..!!!:|||!.!|||||| !! LeuAlaGluIleMetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePheGl 3180464 : TTAGCTGAAATAATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTTCGG : 3180518 253 : lSerThrLeuThrIleCysValAsnLeuTyrIleLeuMetGlyThrGlnIleThrP : 271 !||| !:!!..!||||||:!!!:!||| ! |||:!:..!.!!.!.||| ! ySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleLeuS 3180519 : AAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTCTCA : 3180575 272 : heGluArgIleMetGlnLeuAlaIleTyrSerSerCysMetLeuThrGlnIleTyr : 289 ! ..!.!!:!: ! ! ...||| ||| :::||| !|||! !!:! erThrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPhe 3180576 : GCACCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGCTTT : 3180629 290 : IlePheCysTrpTyrGlyAsnGluValLysLeuLysSerLeu{A} >>>> Targ : 304 :!!!:!|||||||||||||||||||||!:! !||| !! !{ } LeuTyrCysTrpTyrGlyAsnGluValArgThrLysValArg{T}-+ 3180630 : CTTTACTGTTGGTACGGAAACGAAGTGAGAACGAAGGTTCGC{T}at......... : 3180677 305 : et Intron 1 >>>> {sp}IleSerAspMetIlePheLysLeuAspTrpProA : 316 87 bp {!!}:!::!!|||:!!!!:||| ! :!!|||||| !!! ++{yr}LeuAlaAspValMetPheHisValAspTrpThrG 3180678 : ................ag{AT}CTGGCAGACGTGATGTTTCACGTAGATTGGACGG : 3180797 317 : spLeuAspAsnThrThrLysHisAspLeuLeuMetIleMetMetArgAlaSerTyr : 334 |||..!.!.! ! !!:! ! !:!!|||.!. |||! !|||.!! !!! lyLeuSerGluLysGlyArgLysIleIleLeuPheAlaMetThrArgThrArgSer 3180798 : GATTGAGCGAGAAAGGGAGGAAGATCATTTTATTCGCGATGACGAGAACACGATCG : 3180851 335 : ProIleGluMetThrSerValHisValIleThrMetAsnLeuAspSerPheValIl : 353 |||||| !.!. !||||||||||||||||||:!!|||:!!|||! !||||||:! ProIleLeuPheGluSerValHisValIleThrValAsnIleAspPhePheValVa 3180852 : CCGATTTTATTCGAGAGCGTTCATGTGATCACGGTGAACATCGACTTCTTCGTGGT : 3180908 354 : eLeuLeuLysThrSerTyrSerAlaTyrAsnLeuLeu : 365 !:!! !!:!||| ||| :::::: !||| lValSerArgThrLeuTyrLeuHisPheSerArgLeu 3180909 : CGTCAGTAGAACActatatttacacttttcAAGGCTG : 3180946 vulgar: AfOr69 233 365 . KQ414646.1 3180463 3180946 + 199 M 70 210 S 0 1 5 0 2 I 0 83 3 0 2 S 1 2 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180464 3180946 199 + . gene_id 7 ; sequence AfOr69 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3180464 3180674 . + . KQ414646.1 exonerate:protein2genome:local exon 3180464 3180674 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3180675 3180676 . + . intron_id 1 ; splice_site "AT" KQ414646.1 exonerate:protein2genome:local intron 3180675 3180761 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3180760 3180761 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3180762 3180946 . + . KQ414646.1 exonerate:protein2genome:local exon 3180762 3180946 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180464 3180946 199 + . alignment_id 7 ; Query AfOr69 ; Align 3180464 234 210 ; Align 3180764 305 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr69 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 192 Query range: 147 -> 297 Target range: 3153198 -> 3153645 148 : HisLysLeuProTyrArgMetTrpLeuProTyrAsnTyrThrSerLeuSerAlaTy : 166 ...|||... :::|||:::||||||||||||:!! !|||!!!! ! !!!.!!: ArgLysPheLysPheArgValTrpLeuProTyrAspThrThrThrGlnProValPh 3153199 : agaaaattcaaatttcgcgtCTGGTTACCTTACGACACTACTACACAACCTGTCTT : 3153253 167 : rThrPheIleTyrThrGlnGlnValValSerLeuIleValSerAlaMetIleHisV : 185 !|||.!.|||||| !||||||:!!|||!!! ! !|||!.!! |||:!!| eThrLeuIleTyrCysGlnGlnIleValCysThrTrpTyrSerValAsnIleAsnV 3153254 : CACTCTGATCTACTGTCAACAGATCGTCTGCACGTGGTACAGCGTGAATATTAACG : 3153310 186 : alAlaCysAspSerPheIleTrpAlaLeuLeuMetHisIleCysAsnGlnIleGlu : 203 || !||||||!!!.!..!! ! !.!|||:!!!!:!!.||||||::: :!!..! alIleCysAspCysLeuPheSerGlyLeuMetIleGlnIleCysSerIleLeuArg 3153311 : TCATTTGCGACTGCCTGTTCAGCGGCCTGATGATACAGATTTGCTCAATCTTACGG : 3153364 204 : IlePheAsnCysArgLeuLysLysIleLysAspHisGluLysAsnGluValThrLy : 222 ! .!.!!. !! !! !::!!!. ! ! ! ! ! !! !..! !|||!. LysMetLysProThrArgArgAsnCysValLeuValThrIleIleArgTyrThrSe 3153365 : AAGATGAAACCTACTCGGCGAAACTGTGTGCTCGTCACCATAATCAGATATACAAG : 3153421 223 : sLeuCysIleHisTyrHisAsnLeuIleTyrArgLeuAlaThrThrIleAsnGluG : 241 .! !! ! ... ... ! !!|||||| !! !:!:||||||: rGlnSerArgGlnGluIleLysArgTyrVal***LeuAlaGlnIleValAsnGluL 3153422 : CCAGTCTCGacaagaaattaaacgatacgTTTGATTGGCGCAAATAGTGAACGAGA : 3153478 242 : lnPheLysMetValIlePheValGlnPheThrValSerThrLeuThrIleCysVal : 259 !!.!! !! ||| !:!!||||||.!!:!!|||||| !.!!|||||| !! ysLeuGlyAsnValSerSerIleGlnPheAlaIleSerThrGlyAlaIleCysPhe 3153479 : AGCTTGGAAATGTCTCGAGTATACAGTTCGCGATAAGCACAGGAGCGATATGCTTC : 3153532 260 : AsnLeuTyrIleLeuMetGlyThrGlnIleThrPheGluArgIleMetGlnLeuAl : 278 ||||||||| !:!! !! !! !:!!:!! ! :!! !:!: !|||.! AsnLeuTyrArgMetSerValIleGluLeuGlyProLysPheValGluAlaLeuTh 3153533 : AATCTCTATCGAATGTCGGTGATAGAACTCGGTCCAAAGTTTGTGGAAGCGTTAAC : 3153589 279 : aIleTyrSerSerCysMetLeuThrGlnIleTyrIlePheCysTrpTyrGlyAsnG : 297 !||| !!! !|||:!:|||.!!||||||!:! !!:!|||||||||||||||: rIle---ThrValCysLeuLeuAlaGlnIlePheTyrTyrCysTrpTyrGlyAsnA 3153590 : TATC---ACAGTATGCTTACTCGCGCAGATATTTTACTATTGTTGGTAcggtaacg : 3153643 298 : lu : 297 :: sp 3153644 : at : 3153645 vulgar: AfOr69 147 297 . KQ414646.1 3153198 3153645 + 192 M 132 396 G 1 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153199 3153645 192 + . gene_id 8 ; sequence AfOr69 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153199 3153645 . + . KQ414646.1 exonerate:protein2genome:local exon 3153199 3153645 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3153199 3153645 192 + . alignment_id 8 ; Query AfOr69 ; Align 3153199 148 396 ; Align 3153595 281 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr69 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 231 -> 312 Target range: 3174931 -> 3175171 232 : TyrArgLeuAlaThrThrIleAsnGluGlnPheLysMetValIlePheValGlnPh : 250 !:!|||!!!||| !! !||||||! !:!!|||!..!!:..!!!: !..!||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3174932 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3174986 251 : eThrValSerThrLeuThrIleCysValAsnLeuTyrIleLeuMetGlyThrGlnI : 269 | !|||!!!|||:!!|||!!:||| !!||||||!:! !|||! !|||:!!: eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3174987 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3175043 270 : leThrPheGluArgIleMetGlnLeuAlaIleTyrSerSerCysMetLeuThrGln : 287 !: !:!..!!:!:!!:!: !||| ! !:!! ! ! !!:!!!!!.!!||| al---TyrSerGlnValLeuAlaLeuIleProPheMetValSerValPheAlaGln 3175044 : TG---TATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAG : 3175094 288 : IleTyrIlePheCysTrpTyrGlyAsnGluValLysLeuLysSerLeuAspIleSe : 306 |||!:! !! !||||||||||||||||||..!|||:!!||| !! !||| !!! IlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLysValArgAspGlnTh 3175095 : ATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGGTACGTGATCAAAC : 3175151 307 : rAspMetIlePheLysLeu : 312 !|||.!.:::|||...::: rAspPheLeuPheSerIle 3175152 : AGACTTCttattctcaatt : 3175171 vulgar: AfOr69 231 312 . KQ414646.1 3174931 3175171 + 152 M 38 114 G 1 0 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174932 3175171 152 + . gene_id 9 ; sequence AfOr69 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174932 3175171 . + . KQ414646.1 exonerate:protein2genome:local exon 3174932 3175171 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3174932 3175171 152 + . alignment_id 9 ; Query AfOr69 ; Align 3174932 232 114 ; Align 3175046 271 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 338 -> 393 Target range: 3178740 -> 3178905 339 : GlnLysSerGlyAsnIleGlyValValValPheMetIleAspTrpPheHisLeuPr : 357 ...:!!|||! !!!.:!!|||! !!.!:!!!:! !!!:|||||| ||||| SerGlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuPr 3178741 : TCCCAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCC : 3178795 358 : oThrLysThrIleGlnAsnLeuIleLeuIleMetAlaMetSerAsnAsnProAlaL : 376 |||| ! ! !! :!!:!!|||:!:||||||||||||! |||!!....|||!.!| oThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValL 3178796 : CACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTA : 3178852 377 : ysLeuThrValGlyArgIleValAspLeuSerLeuSerThrPheGlyAsnVal : 393 ||:!!||| !|||!.!:!!|||! !|||||| !..!:!!||| !::!||| ysMetThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerVal 3178853 : AAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTT : 3178905 vulgar: AfOr56 338 393 . KQ414646.1 3178740 3178905 + 110 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178741 3178905 110 + . gene_id 1 ; sequence AfOr56 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178741 3178905 . + . KQ414646.1 exonerate:protein2genome:local exon 3178741 3178905 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178741 3178905 110 + . alignment_id 1 ; Query AfOr56 ; Align 3178741 339 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr69 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 302 Query range: 232 -> 370 Target range: 1946251 -> 1945686 233 : ArgLeuAlaThrThrIleAsnGluGlnPheLysMetValIlePheValGlnPheTh : 251 |||!!!:!!! !! !:!:||||||:!!||||||:!!:!!:!:.!! !|||||| ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 1946251 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 1946197 252 : rValSerThrLeuThrIleCysValAsnLeuTyrIleLeuMetGlyThrGlnIleT : 270 !:!!|||! !! !..!|||||| !!||||||||| !:!!! !! !:!!!!: sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetA 1946196 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGG : 1946140 271 : hrPheGluArgIleMetGlnLeuAlaIleTyrSerSerCysMetLeuThrGlnIle : 288 :::...::::::::: !:!!||||||! !|||! :!!||||||||| sp---ThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 1946139 : Ac---acgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 1946089 289 : TyrIlePheCysTrpTyrGlyAsnGluValLysLeuLys >>>> Target Int : 302 !:! !!:!|||||||||||||||||||||||| !||| 80 bp PheTyrTyrCysTrpTyrGlyAsnGluValLysAspLys++ 1946088 : TTTTACTATTGCTGGTACGGCAACGAAGTGAAAGATAAGgt............... : 1946045 303 : ron 1 >>>> SerLeuAspIleSerAspMetIlePheLysLeuAspTrpProAs : 316 ||||||.!.:!! !! !!||||||||| ! !|||||| !!.. ++SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSe 1946044 : ..........agAGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTC : 1945925 317 : pLeuAspAsnThrThrLysHisAspLeuLeuMetIleMetMetArgAlaSerTyrP : 335 !|||:!!|||!.!..!! ...! ||||||!!:!!:|||! |||||| ! | rLeuAsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgP 1945924 : TTTGAACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGC : 1945868 336 : roIleGluMetThrSerValHisValIleThrMetAsnLeuAspSerPheValIle : 353 ||||||||.!.||||||:!!||||||:!!:!!:!!||||||!!:||||||:!! ! roIleGluPheThrSerIleHisValValSerValAsnLeuGluSerPheMetAla 1945867 : CAATAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCA : 1945814 354 : >>>> Target Intron 2 >>>> LeuLeuLysThrSerTyrSerAlaTyr : 362 74 bp :!!:!!||||||||||||||||||!:! ++ ++ValIleLysThrSerTyrSerAlaPhe 1945813 : gt.........................agGTAATAAAAACTTCGTACTCCGCGTTC : 1945713 363 : AsnLeuLeuGlnSerAsnArgGlu : 370 |||:!!:!!|||..!!:!!:!:!! AsnMetIleGlnGlnSerLysGln 1945712 : AACATGATCCAACAAAGCAAACAA : 1945687 vulgar: AfOr69 232 370 . KQ414661.1 1946251 1945686 - 302 M 38 114 G 1 0 M 30 90 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945687 1946251 302 - . gene_id 1 ; sequence AfOr69 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1946048 1946251 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946251 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local splice5 1946046 1946047 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945968 1946047 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1945968 1945969 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945812 1945967 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1945967 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945687 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945687 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945687 1946251 302 - . alignment_id 1 ; Query AfOr69 ; Align 1946252 233 114 ; Align 1946138 272 90 ; Align 1945968 302 156 ; Align 1945738 354 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr69 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 194 Query range: 301 -> 366 Target range: 1948618 -> 1948290 302 : SerLeuAspIleSerAspMetIlePheLysLeuAspTrpProAspLeuAspAsnTh : 320 ||||||!!:||||||:!!||||||||| ! ||||||||| !! !!!|||!!..! SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 1948618 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 1948564 321 : rThrLysHisAspLeuLeuMetIleMetMetArgAlaSerTyrProIleGluMetT : 339 !||||||!..:!!:!!|||! !!:|||||||||||||||! |||||||||!!:! aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 1948563 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 1948507 340 : hrSerValHisValIleThrMetAsnLeuAspSerPheValIle >>>> Targe : 354 !||||||!.!|||:!!:!!:!!|||||||||||||||||| ! leSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 1948506 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.......... : 1948460 355 : t Intron 1 >>>> LeuLeuLysThrSerTyrSerAlaTyrAsnLeuLeuGln : 366 133 bp ||||||||||||||||||||||||||||||:!!|||||| ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGln 1948459 : ...............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAA : 1948293 vulgar: AfOr69 301 366 . KQ414661.1 1948618 1948290 - 194 M 52 156 5 0 2 I 0 129 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948291 1948618 194 - . gene_id 2 ; sequence AfOr69 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1948463 1948618 . - . KQ414661.1 exonerate:protein2genome:local exon 1948463 1948618 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1948461 1948462 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1948330 1948462 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1948330 1948331 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1948291 1948329 . - . KQ414661.1 exonerate:protein2genome:local exon 1948291 1948329 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948291 1948618 194 - . alignment_id 2 ; Query AfOr69 ; Align 1948619 302 156 ; Align 1948330 354 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr173JIP Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 291 -> 349 Target range: 358648 -> 358896 292 : TyrAsnThrGluTrpTyrLysLeuProIleIleGluGlnLysLeuLeuLeuPheIleM : 311 |||!:!:!!! !||||||! ! !!:!: !! !|||||| !||||||!:!|||| TyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuLeuTyrIleM 358649 : TACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGTTATACATCA : 358706 312 : etGlnAsnAsnLeuLysAsnLeuAsnPheValLeuLeuGlyThrMetIleAlaSerTy : 330 |||||:!!::!:!!:!!:!!! !|||||| !:!! !||| !.!.:!: !!||||| etGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheValProSerTy 358707 : TGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGTGCCGAGTTA : 358763 331 : rAsnValTyrValMet >>>> Target Intron 1 >>>> IleLeuArgThrA : 340 |.!.! !!:! !! ! 74 bp ::: !|||! !: rGlnGlyPheSerThr++ ++LeuThrArgMetS 358764 : CCAAGGATTTTCTACGgt.........................agttGACCAGAATGT : 358867 341 : laPheSerTyrPheMetValIleTyrSer : 349 !!||||||||||||||||||!!: !||| erPheSerTyrPheMetValMetArgSer 358868 : CGTTCAGCTATTTTATGGTCATGCGTTCt : 358896 vulgar: AmOr173JIP 291 349 . KQ414693.1 358648 358896 + 112 M 44 132 5 0 2 I 0 70 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358649 358896 112 + . gene_id 1 ; sequence AmOr173JIP ; gene_orientation + KQ414693.1 exonerate:protein2genome:local cds 358649 358780 . + . KQ414693.1 exonerate:protein2genome:local exon 358649 358780 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local splice5 358781 358782 . + . intron_id 1 ; splice_site "GT" KQ414693.1 exonerate:protein2genome:local intron 358781 358854 . + . intron_id 1 KQ414693.1 exonerate:protein2genome:local splice3 358853 358854 . + . intron_id 0 ; splice_site "ag" KQ414693.1 exonerate:protein2genome:local cds 358855 358896 . + . KQ414693.1 exonerate:protein2genome:local exon 358855 358896 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358649 358896 112 + . alignment_id 1 ; Query AmOr173JIP ; Align 358649 292 132 ; Align 358855 336 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr64_2 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 323 -> 390 Target range: 1387619 -> 1387955 324 : ThrGluGluIleAlaGlnAlaAlaPheHisSerPheTrpTyrGlnSerArgGlyAr : 342 :::|||...|||.!!|||:!:...:::::: ...||||||.!. !!:! !|| SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 343 : gThrAlaArgAspLeuIleLeuIleIleCysArgGlyAsnSerSerTyrHisValT : 361 | !|||||| ::::::||||||||| |||..!.!.!.!..!! :!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 362 : hrAlaGlyLysPheValPheMetAsnIlePheThrPheLysGlu >>>> Targe : 376 ||||||||||||||||| !:!:::!:!: !.!!||| .!. hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt.......... : 1387778 377 : t Intron 1 >>>> IleLeuLysSerSerThrSerTyrLeuSerValLeuArg : 388 135 bp :::||||||:!!|||.!!||||||:!!|||||||||!.! ++MetLeuLysAlaSerAlaSerTyrValSerValLeuHis 1387779 : ...............agatgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTTGCAT : 1387947 389 : ValMet : 390 !.!||| AlaMet 1387948 : GCAATG : 1387955 vulgar: AfOr64_2 323 390 . KQ414716.1 1387619 1387955 + 123 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387955 123 + . gene_id 1 ; sequence AfOr64_2 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387955 123 + . alignment_id 1 ; Query AfOr64_2 ; Align 1387620 324 156 ; Align 1387911 376 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr173JIP Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 126 -> 211 Target range: 14160 -> 13905 127 : ValIleIleIleValProLeuGlnLeuValPhePheLeuAsnValPheGlyAsnAsnIle : 146 :!!:!:! ! :!! !! ! :!!:!!||| ! !!.. ! ! ! :!!||| IleValAsnAlaIleValCysValIleLeuPheValThrThrProValThrProHisIle 14160 : ATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATT : 14103 147 : LeuAspIleLeuIleProLeuAsnHisThrArgProArgThrValProIleGluIleTyr : 166 ||||||||||||:!!||| !|||.!.:!!||| ! !.!! ! ! ! ! !||| LeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyr 14102 : TTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTAT : 14043 167 : TyrPheIleAspGlnGlnLysPhePhePhePhePheGlyMetHisLeuAsnIleIleThr : 186 ||||||! !|||:!!!!.|||!:! ! ! !:!.!. !! !|||:!! !:!:! ! TyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIle 14042 : TATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATC : 13983 187 : SerPheGlyGlyLeuValTyrIleAlaIleGluThrIleTyrMetGlyMetIleGlnHis : 206 ! ! ! ! !! !||||||:!!||| !!!:|||! !|||!!: !:!::!:|||||| LeuValValPheTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHis 13982 : CTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACAC : 13923 207 : LeuCysGlyLeuLeu : 211 !|||||||||||| GlyCysGlyLeuLeu 13922 : GGCTGCGGATTGTTG : 13906 vulgar: AmOr173JIP 126 211 . KQ414772.1 14160 13905 - 121 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13906 14160 121 - . gene_id 1 ; sequence AmOr173JIP ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13906 14160 . - . KQ414772.1 exonerate:protein2genome:local exon 13906 14160 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13906 14160 121 - . alignment_id 1 ; Query AmOr173JIP ; Align 14161 127 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr175JOI Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 144 -> 214 Target range: 20529 -> 20319 145 : IleLeuAspLysIleLeuProLeuAsnGluThrArgLeuLysLysPheProIleLeuThr : 164 |||||||||! ! !|||||||||:!!|||||| !::: !||| ! !! !.!! IleLeuAspIleTyrAlaProLeuAsnLysThrArgLysArgValPheValTyrProAla 20529 : ATCTTGGACATTTACGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCC : 20472 165 : GluTyrSerIleLeuAspGluLysTyrPheSerLeuThrValIleTyrLeuTyrIleSer : 184 ! |||!!!!!: ! !|||:!!|||!:!! !:!!! !:!!|||:!!:!! .!! ! TyrTyrTrpMetAspProGluGlnTyrTyrMetIleMetIleIleHisIleMetPheVal 20471 : TATTACTGGATGGATCCTGAGCAATACTACATGATAATGATAATACACATAATGTTCGTG : 20412 185 : LeuLeuLeuIleIleThrIlePheValAlaThrGluSerLeuMetIleLeuTrpLeuGln : 204 :!!:!!:!!:!! !..!|||||| !||| !!!:! ! ! :!:! ! :!!||| ValIleMetValCysValIlePheCysAlaCysAspMetAsnTyrValTyrAlaValGln 20411 : GTGATCATGGTCTGTGTCATATTCTGTGCTTGCGACATGAACTACGTGTACGCTGTGCAG : 20352 205 : HisAlaAlaSerLeuCysGluIleThrArg : 214 ||||||..!.!!|||! ! :!!|||||| HisAlaCysGlyLeuLeuAlaValThrArg 20351 : CACGCATGCGGCTTATTGGCTGTCACCAGG : 20320 vulgar: AmOr175JOI 144 214 . KQ414772.1 20529 20319 - 105 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20320 20529 105 - . gene_id 1 ; sequence AmOr175JOI ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20320 20529 . - . KQ414772.1 exonerate:protein2genome:local exon 20320 20529 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20320 20529 105 - . alignment_id 1 ; Query AmOr175JOI ; Align 20530 145 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr64_2 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 323 -> 388 Target range: 1345564 -> 1345837 324 : ThrGluGluIleAlaGlnAlaAlaPheHisSerPheTrpTyrGlnSerArgGlyAr : 342 !:!...|||!!: !||||||..!!:! !||| !||||||.!.! !! !! !!: SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 343 : gThrAlaArgAspLeuIleLeuIleIleCysArgGlyAsnSerSerTyrHisValT : 361 ! !.!!|||...||||||!!! !|||..!|||..!.!.!.! !!! :!!:!!| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 362 : hrAlaGlyLysPheValPheMetAsnIlePheThrPheLysGlu >>>> Targe : 376 |||||||||||||| ! ! .!.::::!! |||||| hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIle++ 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCgt.......... : 1345723 377 : t Intron 1 >>>> IleLeuLysSerSerThrSerTyrLeuSerValLeuArg : 388 78 bp |||:!!|||:!!|||! !:!!|||||||||||||||!:! ++IleValLysAlaSerMetAlaTyrLeuSerValLeuLys 1345724 : ...............agATAGTAAAAGCGTCGATGGCCTATCTTTCCGTTCTGAAA : 1345835 vulgar: AfOr64_2 323 388 . KQ414782.1 1345564 1345837 + 112 M 52 156 5 0 2 I 0 74 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345837 112 + . gene_id 1 ; sequence AfOr64_2 ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345565 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345837 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345837 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345837 112 + . alignment_id 1 ; Query AfOr64_2 ; Align 1345565 324 156 ; Align 1345799 376 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr175JOI Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 144 -> 224 Target range: 26198 -> 25958 145 : IleLeuAspLysIleLeuProLeuAsnGluThrArgLeuLysLysPheProIleLeuThr : 164 |||||||||! :!!:!!|||||||||||||||||| !::! !||| ! !! !.!! IleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAla 26198 : ATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCT : 26141 165 : GluTyrSerIleLeuAspGluLysTyrPheSerLeuThrValIleTyrLeuTyrIleSer : 184 ! |||! !:!! !!!:!!:|||||| !! !|||! !||| :!!:!!|||:!! ! TyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuVal 26140 : TACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTA : 26081 185 : LeuLeuLeuIleIleThrIlePheValAlaThrGluSerLeuMetIleLeuTrpLeuGln : 204 :!!:!!:!!:!!|||:!!:!!||| !||| !!!::!! ! :!:! ! :!!||| ValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGln 26080 : GTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAA : 26021 205 : HisAlaAlaSerLeuCysGluIleThrArgPhePheValGlnSerAlaThrLeuLysSer : 224 ||||||..!.!!|||! ! |||.!! !!! !!.||||||.!! ! !:!!:!!!:! HisAlaCysGlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGluAsn 26020 : CACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAAT : 25961 vulgar: AmOr175JOI 144 224 . LHQN01017803.1 26198 25958 - 124 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25959 26198 124 - . gene_id 1 ; sequence AmOr175JOI ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25959 26198 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25959 26198 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25959 26198 124 - . alignment_id 1 ; Query AmOr175JOI ; Align 26199 145 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr173JIP Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 136 Query range: 135 -> 211 Target range: 26228 -> 26000 136 : ValPhePheLeuAsnValPheGlyAsnAsnIleLeuAspIleLeuIleProLeuAsnHis : 155 :!!|||.!.! ! !|||! !::: |||||||||||||||!!:|||||||||.!. LeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGlu 26228 : CTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAG : 26171 156 : ThrArgProArgThrValProIleGluIleTyrTyrPheIleAspGlnGlnLysPhePhe : 175 |||||| !!||| ! !! ! ! ! !|||||||||:!!|||:!!.!.|||!:! ! ThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHis 26170 : ACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCAT : 26111 176 : PhePhePheGlyMetHisLeuAsnIleIleThrSerPheGlyGlyLeuValTyrIleAla : 195 !:!!!..!!! ! !|||:!! !!:!!:!!..! !.!. ! !! !|||!:! !||| TyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 26110 : TACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 26051 196 : IleGluThrIleTyrMetGlyMetIleGlnHisLeuCysGlyLeuLeu : 211 !!!:.!!! !|||:!! ! :!:|||||| !|||||||||||| CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeu 26050 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTG : 26001 vulgar: AmOr173JIP 135 211 . LHQN01017803.1 26228 26000 - 136 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 26001 26228 136 - . gene_id 1 ; sequence AmOr173JIP ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 26001 26228 . - . LHQN01017803.1 exonerate:protein2genome:local exon 26001 26228 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 26001 26228 136 - . alignment_id 1 ; Query AmOr173JIP ; Align 26229 136 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr173JIP Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 144 -> 211 Target range: 14143 -> 13942 145 : AsnIleLeuAspIleLeuIleProLeuAsnHisThrArgProArgThrValProIleGlu : 164 :!!|||||||||||||||:!!||| !|||.!.:!!||| ! !.!! ! ! ! ! HisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrPro 14143 : CATATTTTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTATCCG : 14086 165 : IleTyrTyrPheIleAspGlnGlnLysPhePhePhePhePheGlyMetHisLeuAsnIle : 184 !|||||||||! !|||:!!!!.|||!:! ! ! !:!.!. !! !|||:!! ! AlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSer 14085 : GCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCC : 14026 185 : IleThrSerPheGlyGlyLeuValTyrIleAlaIleGluThrIleTyrMetGlyMetIle : 204 :!:! ! ! ! ! ! !! !||||||:!!||| !!!:|||! !|||!!: !:!::!: ValIleLeuValValPheTyrValTyrValAlaCysAspThrSerTyrIleTyrValVal 14025 : GTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTG : 13966 205 : GlnHisLeuCysGlyLeuLeu : 211 |||||| !|||||||||||| GlnHisGlyCysGlyLeuLeu 13965 : CAACACGGCTGCGGATTGTTG : 13943 vulgar: AmOr173JIP 144 211 . LHQN01017803.1 14143 13942 - 121 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13943 14143 121 - . gene_id 2 ; sequence AmOr173JIP ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13943 14143 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13943 14143 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13943 14143 121 - . alignment_id 2 ; Query AmOr173JIP ; Align 14144 145 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr64_2 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 326 -> 392 Target range: 39974 -> 40250 327 : IleAlaGlnAlaAlaPheHisSerPheTrpTyrGlnSerArgGlyArgThrAlaArgAsp : 346 |||!.!|||:!!|||!:! !!!!! !||||||.!.! !! ! !!:! !||| !... IleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHisAlaValSer 39975 : ATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCATGCTGTTTCG : 40032 347 : LeuIleLeuIleIleCysArgGlyAsnSerSerTyrHisValThrAlaGlyLysPheVal : 366 |||:!!:!!:!:|||||||||!.!.!. !|||!:!!!.:!!||||||||||||||| ! LeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGlyLysPheSer 40033 : TTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGT : 40092 367 : PheMetAsnIlePheThrPheLysGlu >>>> Target Intron 1 >>>> IleL : 377 !.!.::!:!! !|||!!.! 78 bp :!!| ProPheSerLeuGluLeuPheAsnAla++ ++ValL 40093 : CCCTTTTCTCTCGAGCTGTTTAACGCTgt.........................agGTTT : 40203 378 : euLysSerSerThrSerTyrLeuSerValLeuArgValMetMetAsp : 392 |||||!!!|||.!!.!!|||||||||||||||! !!.!|||! ||| euLysThrSerAlaGlyTyrLeuSerValLeuLeuAlaMetLysAsp 40204 : TAAAAACGTCTGCTGGATATCTTTCCGTGTTGCTAGCTATGAAAGAC : 40250 vulgar: AfOr64_2 326 392 . KQ414804.1 39974 40250 + 119 M 49 147 5 0 2 I 0 74 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39975 40250 119 + . gene_id 1 ; sequence AfOr64_2 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39975 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39975 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40250 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40250 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39975 40250 119 + . alignment_id 1 ; Query AfOr64_2 ; Align 39975 327 147 ; Align 40200 376 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr173JIP Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 340 Query range: 89 -> 210 Target range: 484778 -> 485917 90 : LysAsnPheLeuAspGluIleLysAsnAspTrpAsnSerLeuArgAsnIleGluGluL : 109 |||.!.||||||!!:..!|||:!!:!!|||||||||||||||! !|||! !||||||| LysGluPheLeuGluArgIleGluHisAspTrpAsnSerLeuThrAsnLysGluGluL 484779 : AAGGAGTTTTTGGAACGAATTGAACACGATTGGAACTCGTTGACGAATAAAGAGGAGC : 484836 110 : euArgIleIleHisGluTyrSerLysThrIleLysLysIleThrIleCysPheVal{I : 128 |||||||||||||||||||||||!....!! !:! :!!|||||||||||| !{: euArgIleIleHisGluTyrSerSerValThrArgValLeuThrIleCysPheSer{L 484837 : TTCGGATCATTCACGAATATTCCAGTGTCACGAGAGTTCTAACCATATGTTTCTCA{T : 484893 129 : } >>>> Target Intron 1 >>>> {le}IleIleValProLeuGlnLeuVal : 136 } 776 bp {!!}||||||! !|||! ! !|||||| }++ ++{eu}IleIleGlyProSerLeuLeuVal 484894 : }gt.........................ag{TA}ATTATCGGTCCATCGTTACTTGTG : 485693 137 : PhePheLeuAsnValPheGlyAsnAsnIleLeuAspIleLeuIleProLeuAsnHisT : 156 .!..!!|||..!:!!|||..!|||!:!|||||||||||||||||||||||||||:!!| LeuIleLeuGlyIlePheAsnAsnSerIleLeuAspIleLeuIleProLeuAsnTyrT 485694 : CTGATTCTTGGTATATTTAACAACAGTATTCTGGACATTTTGATTCCTTTGAATTACA : 485753 157 : hrArgProArgThrValProIleGluIleTyrTyrPheIleAspGlnGlnLysPhePh : 175 ||||||||||||||:!!||||||.!. ! :!!|||:!!||||||||||||!:!|| hrArgProArgThrIleProIleAsnSerGluHisPheValAspGlnGlnLysTyrPh 485754 : CTCGTCCGCGGACGATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTT : 485810 176 : ePhePhePheGlyMetHisLeuAsnIleIleThrSerPheGlyGlyLeuValTyrIle : 194 |!:! !.!!!.! |||:!! !:!!.!!..!! !.!!|||!.!:!!|||! :!! eTyrProIleAlaAlaHisValValLeuPheValIleIleGlyAlaIleValLeuLeu 485811 : CTACCCTATTGCAGCACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTC : 485867 195 : AlaIleGluThrIleTyrMetGlyMetIleGlnHisLeuCysGlyLeu : 210 ::! ||| ::: |||..!!!:||||||||| !||||||||| SerThrGluIleLeuIleMetAlaIleIleGlnHisThrCysGlyLeu 485868 : AGCaccgaaatattaattatggCGATAATACAGCACACCTGTGGTTTG : 485917 vulgar: AmOr173JIP 89 210 . KQ414815.1 484778 485917 + 340 M 38 114 S 0 1 5 0 2 I 0 772 3 0 2 S 1 2 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 484779 485917 340 + . gene_id 1 ; sequence AmOr173JIP ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 484779 484893 . + . KQ414815.1 exonerate:protein2genome:local exon 484779 484893 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 484894 484895 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 484894 485669 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 485668 485669 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 485670 485917 . + . KQ414815.1 exonerate:protein2genome:local exon 485670 485917 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 484779 485917 340 + . alignment_id 1 ; Query AmOr173JIP ; Align 484779 90 114 ; Align 485672 129 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr173JIP Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 239 Query range: 242 -> 351 Target range: 486806 -> 487277 243 : LeuAlaLysSerIleThrSerArgThrAsnThrAsnGluIlePheSerSerLeuIleP : 262 |||!.!|||:!!:!!|||!.!!!!! !.!. !:!!|||:::...... |||...| LeuValLysAlaValThrLysSerLysGlnLeuAspGluMetLeuGluPheLeuPheP 486807 : CTCGTCAAAGCAGTTACGAAGAGTAAACAGCTGGACgaaatgttggaatttttgttct : 486864 263 : heValIleCysIleThrIleTyrGlyPheIleProAsnHisPheAlaGlnGluIleIl : 281 ||!.! ! !!|||! ! !|||! !|||:!! !!|||:!!|||||||||:::||||| heAlaCysGlyIleIleCysTyrGluPheValAlaAsnTyrPheAlaGlnLysIleIl 486865 : tCGCGTGTGGCATCATTTGCTACGAATTCGTTGCTAATTATTTTGcacagaaaataat : 486921 282 : eAsnHisSerSerAsnIleLeuIleAsp{Th} >>>> Target Intron 1 >>> : 291 |||||||||||||:!!|||!!!:!: !!{.!} 76 bp eAsnHisSerSerHisIlePheValHis{Al}++ 486922 : aaatcacaGTTCTCACATTTTCGTGCAT{GC}gt........................ : 486955 292 : > {r}TyrAsnThrGluTrpTyrLysLeuProIleIleGluGlnLysLeuLeuLeuP : 309 {!}||||||:!!|||||||||!:!:!!|||:!! |||||||||:::||||||. ++{a}TyrAsnSerGluTrpTyrArgIleProValAlaGluGlnLysValLeuLeuL 486956 : .ag{G}TACAATTCAGAATGGTACAGAATCCCTGTAGCGGAacaaaaagtattattac : 487081 310 : heIleMetGlnAsnAsnLeuLysAsnLeuAsnPheValLeuLeuGlyThrMetIleAl : 328 !!:!:|||||||||!:!||||||:!! !! .!!:!!||| !|||! !!!: !|| euLeuMetGlnAsnSerLeuLysAspAspMetIleLeuLeuGlyGlyIleIleProAl 487082 : TCCTGATGCAAAATAGTTTAAAAGATGATATGATCCTACTTGGCGGAATTATTCCTGC : 487138 329 : aSerTyrAsnValTyrValMet >>>> Target Intron 2 >>>> IleLeuA : 338 ||||!:!.!.! !!:! !:!! 68 bp !!::!!| aSerPheGlnGlyPheSerLeu++ ++MetIleA 487139 : ATCTTTCCAGGGATTTTCACTGgt.........................agATGATTC : 487236 339 : rgThrAlaPheSerTyrPheMetValIleTyrSerMetAsp : 351 |||||:!!||||||||||||||||||:!!||||||.!.!!: rgThrSerPheSerTyrPheMetValLeuTyrSerPheGlu 487237 : GAACATCCTTCTCGTATTTCATGGTACTTTATTCTTTCGAG : 487277 vulgar: AmOr173JIP 242 351 . KQ414815.1 486806 487277 + 239 M 48 144 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 44 132 5 0 2 I 0 64 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 486807 487277 239 + . gene_id 2 ; sequence AmOr173JIP ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 486807 486952 . + . KQ414815.1 exonerate:protein2genome:local exon 486807 486952 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 486953 486954 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 486953 487028 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 487027 487028 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 487029 487161 . + . KQ414815.1 exonerate:protein2genome:local exon 487029 487161 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 487162 487163 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 487162 487229 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 487228 487229 . + . intron_id 1 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 487230 487277 . + . KQ414815.1 exonerate:protein2genome:local exon 487230 487277 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 486807 487277 239 + . alignment_id 2 ; Query AmOr173JIP ; Align 486807 243 144 ; Align 487030 292 132 ; Align 487230 336 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr173JIP Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 134 -> 212 Target range: 448058 -> 448292 135 : LeuValPhePheLeuAsnValPheGlyAsnAsnIleLeuAspIleLeuIleProLeuA : 154 :!! !||| !||| !! !|||! ! :::...||||||||||||!!:|||:!!| IleSerPheThrLeuValGluPheValValHisPheLeuAspIleLeuMetProMetA 448059 : ATTAGCTTTACCTTGGTTGAGTTCGTGGTAcattttctcgatattttaATGCCAATGA : 448116 155 : snHisThrArgProArgThrValProIleGluIleTyrTyrPheIleAspGlnGlnLy : 173 || :!!! !! !!.! !:!!|||.!! !||| ! ! !||| !||||||.!.|| snValSerThrArgHisGluLeuProPheLeuIleGlnCysPheCysAspGlnAspLy 448117 : ACGTATCTACACGGCACGAGCTACCCTTCCTAATTCAATGTTTCTGTGATCAAGATAA : 448173 174 : sPhePhePhePhePheGlyMetHisLeuAsnIleIleThrSerPheGlyGlyLeuVal : 192 ||||||| !!:!.!. !:!: !|||! !:!!:!!|||! !!!.|||||| !||| sPhePheHisTyrIleLeuValPheLeuIleValLeuThrIleLeuGlyGlySerVal 448174 : ATTCTTCCACTATATATTAGTTTTCTTGATCGTTCTCACTATTTTGGGTGGAAGTGTG : 448230 193 : TyrIleAlaIleGluThrIleTyrMetGlyMetIleGlnHisLeuCysGlyLeuLeuL : 212 :!!|||! ! !|||! !|||:!! !.!.! !||||||! !|||||||||!!!| ValLeuAlaThrThrThrThrTyrLeuIlePheSerGlnHisCysCysGlyLeuPheL 448231 : GTATTAGCCACTACAACGACTTACTTGATATTCAGTCAACATTGTTGTGGATTGTTCA : 448290 213 : ys : 212 || ys 448291 : AA : 448292 vulgar: AmOr173JIP 134 212 . KQ414815.1 448058 448292 + 138 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448059 448292 138 + . gene_id 3 ; sequence AmOr173JIP ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448059 448292 . + . KQ414815.1 exonerate:protein2genome:local exon 448059 448292 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448059 448292 138 + . alignment_id 3 ; Query AmOr173JIP ; Align 448059 135 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr173JIP Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 128 -> 214 Target range: 481980 -> 482238 129 : IleIleValProLeuGlnLeuValPhePheLeuAsnValPheGlyAsnAsnIleLeuA : 148 :!!||| !|||! ! !|||:!!.!..!.||| ! !.!...!!:! !:!!|||| LeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuA 481981 : TTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAG : 482038 149 : spIleLeuIleProLeuAsnHisThrArgProArgThrValProIleGluIleTyrTy : 167 ||:!!:!!:!!|||||||||.!.|||||| !!!.! ! !!|||:!!..!!!: ! || spValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMetGluTy 482039 : ACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTA : 482095 168 : rPheIleAspGlnGlnLysPhePhePhePhePheGlyMetHisLeuAsnIleIleThr : 186 |||||||||||||||||||!:!! .!!|||.!! !.!.|||! ! .!! ! ! rPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPhe 482096 : CTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTT : 482152 187 : SerPheGlyGlyLeuValTyrIleAlaIleGluThrIleTyrMetGlyMetIleGlnH : 206 ! ! ! !!.! !:!! !:!!!.!|||||||||:!: !:!: ! !:!!:!!| LeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluH 482153 : CTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAAC : 482212 207 : isLeuCysGlyLeuLeuLysTyrIle : 214 || !....!!|||!!!! !:!! isAlaAlaSerLeuPheThrLeuVal 482213 : ACGCTGCAAGCTTGTTCACCCTTGTA : 482238 vulgar: AmOr173JIP 128 214 . KQ414815.1 481980 482238 + 132 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481981 482238 132 + . gene_id 4 ; sequence AmOr173JIP ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481981 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 481981 482238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481981 482238 132 + . alignment_id 4 ; Query AmOr173JIP ; Align 481981 129 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr173JIP Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 0 -> 50 Target range: 447014 -> 447164 1 : MetAspPheGluGlySerGlnTyrTyrAsnIleAsnArgIleLeuMetIleSerValG : 20 ||||||||| |||! !:!!||||||!:!:!!|||!:! |||:!!! ! !|||| MetAspPheLeuGlyTyrGluTyrTyrSerLeuAsnGlnGlnLeuLeuThrLeuValG 447015 : ATGGACTTCCTCGGGTACGAGTACTATAGCCTCAATCAACAGCTTTTGACGTTGGTCG : 447072 21 : lyLeuTrpProTyrGluArgThrIleTyrSerLysMetLeuAsnIleLeuIlePhePh : 39 ||||||||||||||:!!||| !! ! !!! :!:! !|||! !! !!!:.!.|| lyLeuTrpProTyrLysArgTyrLysLeuThrPheLeuTyrAsnThrTyrMetLeuPh 447073 : GACTGTGGCCGTACAAGAGGTACAAGTTGACATTCCTTTACAATACCTACATGCTGTT : 447129 40 : ePheLeuUnkThrAlaIlePheIleGlnIleMet : 50 ||||!!! ||||||.!!|||:!!|||:!!:!: ePhePheIleThrAlaPhePheLeuGlnValLeu 447130 : CTTCTTCATCACCGCTTTCTTTCTTCAGGTACTT : 447164 vulgar: AmOr173JIP 0 50 . KQ414815.1 447014 447164 + 125 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 447015 447164 125 + . gene_id 5 ; sequence AmOr173JIP ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 447015 447164 . + . KQ414815.1 exonerate:protein2genome:local exon 447015 447164 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 447015 447164 125 + . alignment_id 5 ; Query AmOr173JIP ; Align 447015 1 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr173JIP Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 145 -> 212 Target range: 457207 -> 457408 146 : IleLeuAspIleLeuIleProLeuAsnHisThrArgProArgThrValProIleGluI : 165 :!!|||||||||:!!:!!|||||||||.!.:!!|||||| !! !:!! !:!! ! LeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrLeuThrA 457208 : TTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAG : 457265 166 : leTyrTyrPheIleAspGlnGlnLysPhePhePhePhePheGlyMetHisLeuAsnIl : 184 ! ||||||:!!|||..!:!!|||!:!.!. !!:!.!! ! !|||:!!! !! laGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleTh 457266 : CGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCAC : 457322 185 : eIleThrSerPheGlyGlyLeuValTyrIleAlaIleGluThrIleTyrMetGlyMet : 203 ! ! !.!!!.!!.! !..!! ! !|||! !|||:!!:!! !!!: !! rCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsn 457323 : GTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAAC : 457379 204 : IleGlnHisLeuCysGlyLeuLeuLys : 212 :!!! !|||:!!|||||||||!!!||| ValLeuHisValCysGlyLeuPheLys 457380 : GTACTGCACGTTTGTGGATTGTTCAAG : 457408 vulgar: AmOr173JIP 145 212 . KQ414815.1 457207 457408 + 108 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457208 457408 108 + . gene_id 6 ; sequence AmOr173JIP ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457208 457408 . + . KQ414815.1 exonerate:protein2genome:local exon 457208 457408 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457208 457408 108 + . alignment_id 6 ; Query AmOr173JIP ; Align 457208 146 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr175JOI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 261 Query range: 86 -> 258 Target range: 475310 -> 476109 87 : ValLysLysPheMetAspLysIleLysTyrAspTrpLysIleIleGluMetAsnAsnG : 106 ||||||:!!!!.|||!!:||||||||||||||||||! !! |||.!. .!....| ValLysGlnLeuMetGluLysIleLysTyrAspTrpMetThrIleAsnAspGluGlyG 475311 : GTGAAGCAGTTAATGGAGAAGATAAAGTACGATTGGATGACGATCAACGACGAGGGAG : 475368 107 : luThrPheGluIleMetLysLysArgThrCysLeuGlyLysHisTyrValIleArgPh : 125 || .!!...|||:::|||.......!!! ! !|||||| !:!..!|||! !|| lu---LeuArgIleLeuLysAsnAsnAlaTyrArgGlyLysGlyPheThrIleIlePh 475369 : AG---CTTagaatcttgaaaaataacgCTTACAGAGGAAAAGGATTCACGATCATTTT : 475422 126 : eAla{S} >>>> Target Intron 1 >>>> {er}IlePheTyrSerSerIle : 133 ||||{!} 85 bp { !}:!: ! ||| !!!!!||| eAla{L}++ ++{eu}LeuValTyrProThrIle 475423 : CGCA{T}gt.........................ag{TA}CTGGTATACCCAACAATA : 475531 134 : IleIleIleValPheCysHisIleSerThrCysIleLeuAspLysIleLeuProLeuA : 153 .!!! !!!::!!!!. !! !.!!|||:!! |||||||||...:!:|||||||||| PheThrMetIleLeuLeuLeuPheSerSerLysIleLeuAspSerLeuLeuProLeuA 475532 : TTCACCATGATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTACCCCTGA : 475591 154 : snGluThrArgLeuLysLysPheProIleLeuThrGluTyrSerIleLeuAspGluLy : 172 |||||:!!|||! !!.. !! !! !||| |||||| ||| !!::!!|| snGluSerArgProSerTrpSerLeuIleArgIleGluTyrPheIleAsnGluGlnLy 475592 : ACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaatagaatatttcataaacGAACAGAA : 475648 173 : sTyrPheSerLeuThrValIleTyrLeuTyrIleSerLeuLeuLeuIleIleThrIle : 191 |||||||! !|||!:!|||||||||! ! !:!!!!!:!!||||||.!! !|||! sTyrPheTyrLeuSerValIleTyrGlnThrValThrIleLeuLeuPheGlyThrThr 475649 : ATACTTTTATCTGAGCGTGATCTATCAGACTGTAACGATCCTTCTGTTTGGTACCACG : 475705 192 : PheValAlaThrGluSerLeuMetIleLeuTrpLeuGlnHisAlaAlaSerLeuCysG : 211 !:!||||||||||||:!!:!!.!.! !:!!||||||||||||..! |||||| | TyrValAlaThrGluAlaIlePheThrMetTrpLeuGlnHisCysIleSerLeuPheG 475706 : TACGTAGCAACTGAAGCAATATTTACCATGTGGTTGCAACATTGCATaagtttatttg : 475765 212 : luIleThr{Ar} >>>> Target Intron 2 >>>> {g}PhePheValGln<- : 219 |||||...{||} 198 bp {|}.!..!!:!!||| luIleVal{Ar}++ +-{g}LeuIleIleGlnCy 475766 : aaattgtt{ag}gt.........................aa{A}CTGATTATACAGTG : 475987 220 : >SerAlaThrLeuLysSerSerLysAspHisPheAspAsnAsnIleLysLysTyrIle : 237 !:!||| !! ! ! !|||:!! ! !.!!!. !!!..|||! !!:!||| !:!! sAsnAlaGluProTyrValSerGlnLysArgLeuHisArgAsnSerArgLysIleLeu 475988 : CAACGCTGAGCCGTACGTTTCGCAAAAACGTTTGCACAGAAACAGCAGGAAGATTCTA : 476044 238 : IleLysAlaValIleThrHisArgArgValIleGlnPheIleGlnAspThrArgAspT : 257 |||!!.||||||:!!! !||||||||||||:!!|||!!.:!!... !..!||| IleAsnAlaValValMetHisArgArgValLeuGlnLeuValSerCysValArgPheL 476045 : ATTAATGCTGTGGTTATGCACAGAAGAGTATTACAGTTGGTATCTTGCGTGaggttta : 476104 258 : yrAsn : 258 ||| ysAsn 476105 : aaaat : 476109 vulgar: AmOr175JOI 86 258 . KQ414815.1 475310 476109 + 261 M 20 60 G 1 0 M 19 57 S 0 1 5 0 2 I 0 81 3 0 2 S 1 2 M 86 258 S 0 2 5 0 2 I 0 194 3 0 2 S 1 1 M 4 12 G 0 3 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475311 476109 261 + . gene_id 1 ; sequence AmOr175JOI ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 475311 475428 . + . KQ414815.1 exonerate:protein2genome:local exon 475311 475428 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local splice5 475429 475430 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 475429 475513 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 475512 475513 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 475514 475775 . + . KQ414815.1 exonerate:protein2genome:local exon 475514 475775 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 475776 475777 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 475776 475973 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 475972 475973 . + . intron_id 1 ; splice_site "AA" KQ414815.1 exonerate:protein2genome:local cds 475974 476109 . + . KQ414815.1 exonerate:protein2genome:local exon 475974 476109 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475311 476109 261 + . alignment_id 1 ; Query AmOr175JOI ; Align 475311 87 60 ; Align 475371 108 57 ; Align 475516 128 258 ; Align 475975 215 12 ; Align 475990 219 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr175JOI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 213 Query range: 123 -> 214 Target range: 481968 -> 482241 124 : ArgPheAlaSerIlePheTyrSerSerIleIleIleIleValPheCysHisIleSerT : 143 .........::!:!!.!!||| !!|||:!::!:|||:!::!!.!.||||||!!:|||! AsnIleThrAlaLeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerS 481969 : aatattacagcGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGA : 482026 144 : hrCysIleLeuAspLysIleLeuProLeuAsnGluThrArgLeuLysLysPheProIl : 162 :!! !:!!|||||| |||:!!|||||||||||||||||| ! ! :!!||||||:! erPheValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProVa 482027 : GTTTCGTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGT : 482083 163 : eLeuThrGluTyrSerIleLeuAspGluLysTyrPheSerLeuThrValIleTyrLeu : 181 !! !! !||||||! !||| !.!.:!!||||||! !!!!! !..!.!!:!!! ! lSerMetGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGln 482084 : ATCAATGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAG : 482140 182 : TyrIleSerLeuLeuLeuIleIleThrIlePheValAlaThrGluSerLeuMetIleL : 201 !::.!!|||!!!|||:!!:!! !||||||.!!|||!.!! !|||!!!|||!!::!!: TrpPheSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValM 482141 : TGGTTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTA : 482200 202 : euTrpLeuGlnHisAlaAlaSerLeuCysGluIleThrArg : 214 !!||||||:!!|||||||||||||||! ! :!!..!||| etTrpLeuGluHisAlaAlaSerLeuPheThrLeuValArg 482201 : TGTGGCTTGAACACGCTGCAAGCTTGTTCACCCTTGTAAGG : 482241 vulgar: AmOr175JOI 123 214 . KQ414815.1 481968 482241 + 213 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481969 482241 213 + . gene_id 2 ; sequence AmOr175JOI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481969 482241 . + . KQ414815.1 exonerate:protein2genome:local exon 481969 482241 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481969 482241 213 + . alignment_id 2 ; Query AmOr175JOI ; Align 481969 124 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr175JOI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 179 Query range: 274 -> 373 Target range: 482976 -> 483346 275 : IleAsnLeuPheCysLeuSerGlnSerIleLeuValLeuThrLysIleGluGluThrI : 294 ||| !|||||| |||! !|||||||||!!!:!!! !! !||||||:!!!!:|||: IleLeuLeuPheGlnLeuLeuGlnSerIlePheLeuSerLysLysIleGlnAspThrL 482977 : ATACTTCTTTTCCAGCTGTTGCAATCGATTTTTCTATCGAAGAAAATCCAAGACACGC : 483034 295 : leValSerPheMetCysIleIleCysGluLeuSerTyrMetTyrTyrMetAsnTyrMe : 313 !!:!!!!! !!:!!! !|||:!!! !||||||:!!||||||!:!|||||||||||||| euIleCysValLeuPheIleValSerGluLeuAlaTyrMetPheTyrMetAsnTyrMe 483035 : TAATCTGTGTTCTGTTCATCGTTTCCGAGCTGGCGTACATGTTTTACATGAACTACAT : 483091 314 : tSerGlnGlnValLeuAspCysSerAsnAsnIleIleIleThrIlePhe{Hi} >>> : 330 | !|||!::..!:!!||| !:!!:!!|||||||||! ! !!!:! { } tValGlnArgThrValAspThrAlaAspAsnIleIleThrPheMet***{Al}++ 483092 : GGTGCAACGCACCGTAGACACTGCGGACAACATTATTACATTCATGTGA{GC}gt... : 483146 331 : > Target Intron 1 >>>> {s}ThrAsnTrpTyrLysMetProValProIleG : 341 73 bp {!}!.!|||||||||:!!! ! !!:!!|||:!:| ++{a}AsnAsnTrpTyrGluThrSerIleProLeuG 483147 : ......................ag{C}AATAATTGGTACGAAACGTCCATACCCCTGC : 483248 342 : lnLysLeuIleLeuAsnIleMetLeuAsnCysAsnLysProPheLeuPheThrPhePh : 360 ||||||||:!:|||! !||||||:!!!.. !!! ! ! !! ! !!:! !||||| lnLysLeuLeuLeuIleIleMetMetArgSerIleAspSerCysSerTyrAspPhePh 483249 : AGAAATTACTGTTGATCATCATGATGAGGAGCATCGATAGTTGCAGTTATGATTTCTT : 483305 361 : eSerIleTyrTyrProThrValGluGlyPheAlaSerLeu : 373 |.!!.!!||| ! !!:!!:!!:!!||||||:!!!!!:!! eGlyPheTyrThrAlaSerIleGlnGlyPheSerThrVal 483306 : CGGTTTCTACACCGCTTCGATCCAAGGTTTCTCAACGGTA : 483346 vulgar: AmOr175JOI 274 373 . KQ414815.1 482976 483346 + 179 M 55 165 S 0 2 5 0 2 I 0 69 3 0 2 S 1 1 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482977 483346 179 + . gene_id 3 ; sequence AmOr175JOI ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 482977 483143 . + . KQ414815.1 exonerate:protein2genome:local exon 482977 483143 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 483144 483145 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 483144 483216 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 483215 483216 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 483217 483346 . + . KQ414815.1 exonerate:protein2genome:local exon 483217 483346 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482977 483346 179 + . alignment_id 3 ; Query AmOr175JOI ; Align 482977 275 165 ; Align 483218 331 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr175JOI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 1 -> 47 Target range: 477928 -> 478066 2 : ValGluLeuLeuSerTyrTyrAspPheThrLysPheLeuLeuThrThrLeuGlyLeuT : 21 |||||||||:!!..!||||||:!!||| !||| !|||||||||.!!:!!||||||| ValGluLeuMetGlnTyrTyrAsnPheHisLysAsnLeuLeuThrAlaIleGlyLeuT 477929 : GTTGAACTAATGCAGTATTACAACTTCCACAAGAACCTATTAACGGCAATAGGACTTT : 477986 22 : rpProTyrTyrAsnAlaLysTyrArgIleLeuTyrAsnSerIleIleSerPheThrSe : 40 ||||||||:!!|||.!!|||!:!|||! !||| ! |||||||||:!!||||||! ! ! rpProTyrHisAsnThrLysPheArgThrLeuGlnAsnSerIleValSerPheIleAr 477987 : GGCCGTACCATAACACGAAATTCAGAACATTACAAAACAGTATTGTCAGCTTCATTCG : 478043 41 : rPheSerPheIleValIleGln : 47 !|||||||||:!!!.!:!!||| gPheSerPheValAlaValGln 478044 : CTTTTCGTTTGTAGCTGTACAG : 478066 vulgar: AmOr175JOI 1 47 . KQ414815.1 477928 478066 + 161 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 477929 478066 161 + . gene_id 4 ; sequence AmOr175JOI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 477929 478066 . + . KQ414815.1 exonerate:protein2genome:local exon 477929 478066 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 477929 478066 161 + . alignment_id 4 ; Query AmOr175JOI ; Align 477929 2 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr175JOI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 0 -> 87 Target range: 480943 -> 481699 1 : MetValGluLeuLeuSerTyrTyrAspPheThrLysPheLeuLeuThrThrLeuGlyL : 20 |||! !|||!!!:!!!!!|||||| ! .!.!:!! |||:!!|||:!! !:!!|||| MetGlyGluPheIleThrTyrTyrLysLeuSerIlePheIleLeuSerTrpIleGlyL 480944 : ATGGGTGAATTCATAACGTATTACAAACTGAGCATTTTTATATTGTCGTGGATAGGAT : 481001 21 : euTrpProTyrTyrAsnAlaLysTyrArgIleLeuTyrAsnSerIleIleSerPheTh : 39 ||||||||||| ... |||:::::: ||||||||| ! !||||||.!!! euTrpProTyrLysLysLeuLysPheGlnTrpLeuTyrAsnValAlaIleSerLeuIl 481002 : TGTGGCCGTACaagaaattgaagtttcaaTGGCTTTATAATGTCGCCATCAGCCTCAT : 481058 40 : rSerPheSerPheIleValIleGlnCysIleValPheLys{As} >>>> Target : 53 !|||!!.||| !|||:!! !||| ! !! !! !{ } 49 eSerLeuSerThrIleIleProGlnValCysArgSerThr{Le}-+ 481059 : TTCTTTGTCCACTATAATTCCCCAGGTATGTCGTTCCACA{CT}tt............ : 481104 54 : Intron 1 >>>> {n}SerPheLysAsnLysLysMetLeuLysTyrLeuSerMetL : 67 5 bp { }!:!|||! ! ! ||||||! ! ! :!!||| : +-{u}AsnPheThrTrpValThrMetLeuMetLysValSerSerV 481105 : .............ac{A}AACTTCACATGGGTCACCATGCTGATGAAAGTGTCTTCTG : 481637 68 : euIleMetSerLeuGlySerPheValLysTyrAsnIleAsnTrpTyrGlnLeuAlaTh : 86 !!:!!|||!!!||| !!:!!|||:!!|||||||||||| !|||||||||:!!! !.! alLeuMetThrLeuCysAlaPheIleLysTyrAsnIlePheTrpTyrGlnIleAspAl 481638 : TGCTCATGACCTTATGCGCCTTCATTAAGTACAATATATTCTGGTACCAAATTGATGC : 481694 87 : rVal : 87 !||| aVal 481695 : AGTG : 481699 vulgar: AmOr175JOI 0 87 . KQ414815.1 480943 481699 + 138 M 52 156 S 0 2 5 0 2 I 0 491 3 0 2 S 1 1 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 480944 481699 138 + . gene_id 5 ; sequence AmOr175JOI ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 480944 481101 . + . KQ414815.1 exonerate:protein2genome:local exon 480944 481101 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 481102 481103 . + . intron_id 1 ; splice_site "Tt" KQ414815.1 exonerate:protein2genome:local intron 481102 481596 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 481595 481596 . + . intron_id 0 ; splice_site "AC" KQ414815.1 exonerate:protein2genome:local cds 481597 481699 . + . KQ414815.1 exonerate:protein2genome:local exon 481597 481699 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 480944 481699 138 + . alignment_id 5 ; Query AmOr175JOI ; Align 480944 1 156 ; Align 481598 54 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr175JOI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 248 -> 325 Target range: 479306 -> 479602 249 : GlnPheIleGlnAspThrArgAspTyrAsnAlaIleThrTyrCysIleLeuLeuIleP : 268 ::!|||.!!!!.|||..!! ! !!::! ! !.!!||| !!:!!||||||:!:| ArgPhePheHisAspValIleArgAspSerIleProAlaTyrSerValLeuLeuLeuP 479307 : AGGTTTTTTCACGATGTGATAAGGGACTCTATACCAGCGTACAGTGTTCTCCTTTTGT : 479364 269 : heAlaIleIleSerLeuGlyIleAsnLeuPhe{C} >>>> Target Intron 1 : 279 ||||||||! !||||||.!!|||||||||!:!{ } 65 bp heAlaIleThrSerLeuSerIleAsnLeuTyr{G}++ 479365 : TCGCTATCACCTCGTTGAGCATTAATTTGTAT{C}gt..................... : 479400 280 : >>>> {ys}LeuSerGlnSerIleLeuValLeuThrLysIleGluGluThrIleVal : 295 { }:!!||||||:!!:!: ! !||| !:!!||||||||||||:!::!! --{ln}IleSerGlnAlaValThrHisLeuAspGluIleGluGluThrLeuIle 479401 : ....cc{AG}ATATCGCAAGCAGTGACTCATTTAGACGAAATCGAAGAAACATTGATC : 479510 296 : SerPheMetCysIleIleCysGluLeuSerTyrMetTyrTyrMetAsnTyrMetSerG : 315 !!!.!.|||! ! ! !!|||||||||||||||||||||:!!:!!|||!!: | ThrLeuMetPheAlaSerGlyGluLeuSerTyrMetTyrTyrLeuHisTyrIleLeuG 479511 : ACACTGATGTTTGCGTCTGGCGAGCTAAGTTACATGTACTACTTGCATTATATActtc : 479570 316 : lnGlnValLeuAspCysSerAsnAsnIleIle : 325 ||:::::::::||| !|||:!!|||:!!:!! lnLysIleIleAspHisSerAspAsnLeuVal 479571 : agaaaataattgatcaCTCTGATAATCTTGTC : 479602 vulgar: AmOr175JOI 248 325 . KQ414815.1 479306 479602 + 134 M 30 90 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 479307 479602 134 + . gene_id 6 ; sequence AmOr175JOI ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 479307 479397 . + . KQ414815.1 exonerate:protein2genome:local exon 479307 479397 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 479398 479399 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 479398 479462 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 479461 479462 . + . intron_id 0 ; splice_site "CC" KQ414815.1 exonerate:protein2genome:local cds 479463 479602 . + . KQ414815.1 exonerate:protein2genome:local exon 479463 479602 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 479307 479602 134 + . alignment_id 6 ; Query AmOr175JOI ; Align 479307 249 90 ; Align 479465 280 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr175JOI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 163 -> 215 Target range: 478638 -> 478794 164 : ThrGluTyrSerIleLeuAspGluLysTyrPheSerLeuThrValIleTyrLeuTyrI : 183 |||||||||! !||| ::::::||||||||| ... ::: ::::!!|||: ThrGluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValTyrL 478639 : ACGGAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGTACC : 478696 184 : leSerLeuLeuLeuIleIleThrIlePheValAlaThrGluSerLeuMetIleLeuTr : 202 !:||||||:!!:!! ! !|||:!!!:!|||||||||||||||! !:!!|||:!!|| euSerLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMetTr 478697 : TGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTATGTG : 478753 203 : pLeuGlnHisAlaAlaSerLeuCysGluIleThrArgPhe : 215 |:!! !|||.!! !.!!|||! !.!.|||! !|||!:! pMetValHisThrIleGlyLeuTyrAsnIleIleArgTyr 478754 : GATGGTGCATACTATCGGCTTGTATAATATCATAAGGTAT : 478794 vulgar: AmOr175JOI 163 215 . KQ414815.1 478638 478794 + 121 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478639 478794 121 + . gene_id 7 ; sequence AmOr175JOI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478639 478794 . + . KQ414815.1 exonerate:protein2genome:local exon 478639 478794 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478639 478794 121 + . alignment_id 7 ; Query AmOr175JOI ; Align 478639 164 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr175JOI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 129 -> 214 Target range: 457162 -> 457417 130 : TyrSerSerIleIleIleIleValPheCysHisIleSerThrCysIleLeuAspLysI : 149 |||!!!.!! !:!::!!|||..! ! !!.:!!! ! !! :!!||||||! : TyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleV 457163 : TATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTG : 457220 150 : leLeuProLeuAsnGluThrArgLeuLysLysPheProIleLeuThrGluTyrSerIl : 168 !::!!||||||||||||:!!|||! ! :!!!!. !:!! !.!!||||||! !:! alValProLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheVa 457221 : TGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGT : 457277 169 : eLeuAspGluLysTyrPheSerLeuThrValIleTyrLeuTyrIleSerLeuLeuLeu : 187 ! ! :!!||||||.!. !! !! !:!! :!!:!! !! !!!||||||:!! lAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIle 457278 : CGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATC : 457334 188 : IleIleThrIlePheValAlaThrGluSerLeuMetIleLeuTrpLeuGlnHisAlaA : 207 !|||! !!...!|||!.!|||||||||:!:||| ! :!!! !|||!.!. AlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValC 457335 : GCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTT : 457394 208 : laSerLeuCysGluIleThrArg : 214 .!.!!|||! !:!!:!!|||||| ysGlyLeuPheLysLeuThrArg 457395 : GTGGATTGTTCAAGCTTACTAGG : 457417 vulgar: AmOr175JOI 129 214 . KQ414815.1 457162 457417 + 114 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457163 457417 114 + . gene_id 8 ; sequence AmOr175JOI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457163 457417 . + . KQ414815.1 exonerate:protein2genome:local exon 457163 457417 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457163 457417 114 + . alignment_id 8 ; Query AmOr175JOI ; Align 457163 130 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr175JOI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 116 -> 213 Target range: 464549 -> 464843 117 : LeuGlyLysHisTyrValIleArgPheAlaSerIlePheTyrSerSerIleIleIleI : 136 ||| !..!!..||| !!:!:!.!.!! !! ! !||| ! !! !|||:!:.!!| LeuIleSerArgTyrPheLeuAsnIleProValCysPheIleProValIleLeuPheI 464550 : TTGATTTCACGATACTTCCTGAATATTCCAGTGTGCTTCATTCCCGTTATACTGTTCA : 464607 137 : leValPheCysHisIleSerThrCysIleLeuAspLysIleLeuProLeuAsnGluTh : 155 || !!!. !.!.:!!! ! !! !||||||||| !:!! !||||||||||||:! leCysLeuLeuGluValLeuProAspIleLeuAspValValAlaProLeuAsnGluSe 464608 : TCTGTTTACTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATGAATC : 464664 156 : rArgLeuLysLysPheProIleLeuThrGluTyrSerIleLeuAspGluLys<->Tyr : 173 !|||! ! ! :!!!:! !||| !.!!|||!:!! !||| !|||.....! !! rArgSerHisGlnTyrLeuIleThrAlaGluPhePheIleThrAspSerSerProAsn 464665 : TCGTTCTCATCAATACTTAATTACCGCGGAATTTTTCATCACTGATAGTTCGCCGAAT : 464721 174 : PheSerLeuThrValIleTyrLeuTyrIleSerLeuLeuLeuIleIleThrIlePheV : 193 !:!! !:!!||| !:!! ! ! !!|||!!!|||:!!:!! !:!!|||! !.!.: TyrIleValThrCysValGlyThrAspIleThrLeuIleMetGlyValThrThrIleI 464722 : TATATCGTAACTTGTGTTGGTACGGATATTACTCTTATCATGGGAGTCACGACAATAA : 464781 194 : alAlaThrGluSerLeuMetIleLeuTrpLeuGlnHisAlaAlaSerLeuCysGluIl : 212 !!|||:!!|||!!!!!!! .!!|||! !||||||||| !..!:!!:!!! !:!!|| leAlaSerGluThrPheThrPheLeuLeuLeuGlnHisIleCysAlaMetPheLysIl 464782 : TTGCCTCCGAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAATGTTCAAAAT : 464838 213 : eThr : 213 |||| eThr 464839 : CACA : 464843 vulgar: AmOr175JOI 116 213 . KQ414815.1 464549 464843 + 109 M 56 168 G 0 3 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464550 464843 109 + . gene_id 9 ; sequence AmOr175JOI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464550 464843 . + . KQ414815.1 exonerate:protein2genome:local exon 464550 464843 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464550 464843 109 + . alignment_id 9 ; Query AmOr175JOI ; Align 464550 117 168 ; Align 464721 173 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr176 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 0 -> 49 Target range: 142348 -> 142201 1 : MetLeuAspAsnTyrTyrTyrArgTyrValArgPheTyrSerLysLeuValGlyLeuT : 20 .!.!!!!!:!:! !|||!:!!.!||||||||||||! !:!!!:!! !:!!||||||| PhePheGluSerArgTyrPheAsnTyrValArgPheCysAlaArgGlnIleGlyLeuT 142348 : TTCTTCGAGAGTCGTTACTTTAACTACGTACGTTTCTGTGCAAGGCAAATCGGTCTGT : 142291 21 : rpProPheAspAsnSerLysGlnGlnThrThrArgLysTrpPheIleGlnAlaMetPh : 39 |||||||||||:!!..!|||:!!|||! !! !!:!!:!!:: !!:!! !.!. rpProPheAspAspGluLysGluGlnArgIleLysArgTyrValValPheMetPheSe 142290 : GGCCGTTCGACGATGAGAAAGAACAAAGGATTAAGAGATACGTTGTTTTCATGTTCAG : 142234 40 : eValLeuIleIleValTyrGlnValArgIle : 49 !|||||| !! :!! |||||| !||| rValLeuTyrThrLeuLeuGlnValSerIle 142233 : CGTACTGTATACGCTGCTGCAGGTATCGATT : 142202 vulgar: AmOr176 0 49 . KQ414817.1 142348 142201 - 106 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 142202 142348 106 - . gene_id 1 ; sequence AmOr176 ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 142202 142348 . - . KQ414817.1 exonerate:protein2genome:local exon 142202 142348 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 142202 142348 106 - . alignment_id 1 ; Query AmOr176 ; Align 142349 1 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr177 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 161 -> 215 Target range: 130322 -> 130160 162 : IleIleLeuThrGluTyrPheIleAspArgGluLysTyrSerTyrProIleTyrIleH : 181 :!!:!!! !||||||||||||:!!||| !:!! ! |||! !|||! !||| |||| LeuValArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIleH 130322 : CTCGTTCGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCC : 130265 182 : isLeuAsnValAlaIleLeuLeuValCysSerMetGluIleGlyThrAspValLeuHi : 200 || !!.!:!!||||||:!!! ! ! !!!|||:!!|||.!!!:!|||:::|||:: isAlaThrIleAlaIleMetCysSerValThrMetGlnIleSerSerAspIleLeuAs 130264 : ACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaa : 130208 201 : sAlaIleIleIleThrHisIleIleGlyIlePheAspLysIleGly : 215 : |||...:::! !||||||! !|||!!:|||!!: !|||||| nAsnIlePheMetMetHisIleSerGlyMetPheGluValIleGly 130207 : taacatatttatGATGCACATCAGTGGAATGTTCGAGGTAATTGGG : 130161 vulgar: AmOr177 161 215 . KQ414817.1 130322 130160 - 126 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130161 130322 126 - . gene_id 1 ; sequence AmOr177 ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130161 130322 . - . KQ414817.1 exonerate:protein2genome:local exon 130161 130322 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 130161 130322 126 - . alignment_id 1 ; Query AmOr177 ; Align 130323 162 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr177 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 331 -> 377 Target range: 128560 -> 128422 332 : AlaTyrCysGlyHisTrpTyrSerThrSerAlaLysThrGlnLysLeuLeuLeuPheL : 351 ::!||||||!.! ! ||||||!.!.!! !!!..|||:::||||||:::|||||||||| SerTyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheL 128560 : AGCTATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCC : 128503 352 : euMetHisArgPheMetThrProTyrLysPheArgPheLysAsnValValIleValVa : 370 ||||||||||||||||| !|||! !!:!.!.!:!.!.|||::!:!!||| !!.!! euMetHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGl 128502 : TCATGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGG : 128446 371 : lAspGlnThrTyrLeuSerMet : 377 !:!!:!! !||| !!!!:!: yAsnGluLeuTyrAlaThrVal 128445 : TAACGAGTTGTACGCTACCGTA : 128423 vulgar: AmOr177 331 377 . KQ414817.1 128560 128422 - 123 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128423 128560 123 - . gene_id 2 ; sequence AmOr177 ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 128423 128560 . - . KQ414817.1 exonerate:protein2genome:local exon 128423 128560 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128423 128560 123 - . alignment_id 2 ; Query AmOr177 ; Align 128561 332 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr173JIP Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 287 -> 350 Target range: 128569 -> 128306 288 : LeuIleAspThrTyrAsnThrGluTrpTyrLysLeuProIleIleGluGlnLysLeuL : 307 |||! ! !!:!||| !.!!:!!||||||||| !|||::: ...||||||:::| LeuThrPheSerTyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetL 128569 : TTAACATTTAGCTATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgC : 128512 308 : euLeuPheIleMetGlnAsnAsnLeuLysAsnLeuAsnPheValLeuLeuGlyThrMe : 326 ||||||||:!!|||!!.!.. !:!!:!! ! !!...!. !||| !..! !:! euLeuPheLeuMetHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuVa 128511 : TACTGTTCCTCATGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGT : 128455 327 : tIleAlaSerTyrAsnValTyrValMet >>>> Target Intron 1 >>>> I : 336 : !|||.!! !!.!.:!!|||!.!! 74 bp : lAlaAlaGlyAsnGluLeuTyrAlaThr++ ++M 128454 : TGCCGCGGGTAACGAGTTGTACGCTACCgt.........................aga : 128351 337 : leLeuArgThrAlaPheSerTyrPheMetValIleTyrSerMet : 350 !::!!!:!|||!.!||||||||||||! !|||:!!||||||:!! etValGlnThrGlyPheSerTyrPheThrValLeuTyrSerLeu 128350 : TGGTGCAGACTGGTTTCTCCTACTTTACGGTTCTCTACTCGTTG : 128307 vulgar: AmOr173JIP 287 350 . KQ414817.1 128569 128306 - 108 M 48 144 5 0 2 I 0 70 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128307 128569 108 - . gene_id 1 ; sequence AmOr173JIP ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128569 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128569 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128307 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128307 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128307 128569 108 - . alignment_id 1 ; Query AmOr173JIP ; Align 128570 288 144 ; Align 128352 336 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr173JIP Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 134 -> 210 Target range: 1224270 -> 1224039 135 : LeuValPhePheLeuAsnValPheGlyAsnAsnIleLeuAspIleLeuIleProLe : 153 ||||||!:!.!. ! ! !!!. !||| :!!||||||:!!:!! ||||| LeuValTyrMetSerPheProLeuIleAsnProValLeuAspValValAlaProLe 1224270 : TTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTT : 1224216 154 : uAsnHisThrArgProArgThrValProIleGluIle<->TyrTyrPheIleAspG : 171 ||||.!.||||||||||||! !:!! !:!! !:!! ||| |||||||||: uAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleAspG 1224215 : AAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACG : 1224159 172 : lnGlnLysPhePhePhePhePheGlyMetHisLeuAsnIleIleThrSerPheGly : 189 !! ! :!! !|||!:! ! ! ..!.!.|||||| !!! !! !..!! !! ! !! luTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSerCys 1224158 : AGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGC : 1224105 190 : GlyLeuValTyrIleAlaIleGluThrIleTyrMetGlyMetIleGlnHisLeuCy : 208 |||:!!:!! ||||||:!:!!:! !:!!|||!!: !!!:||| |||||||| GlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCy 1224104 : GGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTG : 1224048 209 : sGlyLeu : 210 ||||||| sGlyLeu 1224047 : CGGATTG : 1224040 vulgar: AmOr173JIP 134 210 . KQ414851.1 1224270 1224039 - 132 M 31 93 G 0 3 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224040 1224270 132 - . gene_id 1 ; sequence AmOr173JIP ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224040 1224270 . - . KQ414851.1 exonerate:protein2genome:local exon 1224040 1224270 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224040 1224270 132 - . alignment_id 1 ; Query AmOr173JIP ; Align 1224271 135 93 ; Align 1224175 166 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr17 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1380 Query range: 2 -> 402 Target range: 204197 -> 207607 3 : AsnIleSerGlyIleAlaLysAlaGluGluAspLeuLysTyrAlaThrArgPheValL : 22 !!.!!:||||||||||||!:!|||||||||||||||!:!||||||||||||||||||| LysMetSerGlyIleAlaArgAlaGluGluAspLeuArgTyrAlaThrArgPheValL 204198 : AAAATGTCTGGAATCGCGAGGGCAGAAGAGGACCTGAGATACGCGACACGTTTCGTGA : 204255 23 : ysProIleMetGlyMetIleGlyAlaTrpProIleSerProSerThrSerPhePheSe : 41 ||||||||:!:|||!!::!!||||||||||||||| !! !!:!:!!||| |||!! ysProIleLeuGlyIleValGlyAlaTrpProIleProValAsnSerSerProPheTh 204256 : AGCCGATTTTAGGGATAGTCGGTGCGTGGCCGATTCCAGTGAACTCCTCTCCGTTCAC : 204312 42 : rLysValLeuGlnArgSerLysHisIlePheThrTyrPheLeuPhePheLeuIleMet : 60 !!:!:!!:!!!:!|||! !:!!|||:!! !!|||||||||||||||||||||:!:!!: rArgLeuValArgArgIleGluHisValValThrTyrPheLeuPhePheLeuMetIle 204313 : GAGGCTAGTACGGCGAATAGAACACGTAGTCACCtatttcctcttctttctgaTGATC : 204369 61 : IleProThrLeuMetTyrValPheLeuLysGluLysAsnAsnLysMetArgLeuLysL : 80 :!!||| !|||:!!||||||||||||||||||||||||..!|||!!:|||||||||: ValProGlyLeuLeuTyrValPheLeuLysGluLysAsnGlyLysIleArgLeuLysI 204370 : GTACCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGA : 204429 81 : euMetProProIleIleAsnCysSerIleGlnPhePheLysTyrThrIleIleLeuTr : 99 !!:!: !||||||:!:|||||||||||||||||||||||||||:!!:!!||||||!: leLeuGlyProIleValAsnCysSerIleGlnPhePheLysTyrSerValIleLeuTy 204430 : TTCTCGGGCCGATCGTGAACTGCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTA : 204486 100 : pArgArgLysGluIleGlnGluGlyLeuTyrAlaIleLysHisAspTrpIleLysAla : 118 :|||! ! ! :!!||||||:!!.!!||| !!.!!|||!:!!.!|||||||||:!!||| rArgIleAspLysIleGlnLysSerLeuAsnThrIleArgArgAspTrpIleGluAla 204487 : CCGGATCGACAAAATTCAGAAGAGTTTGAACACCATCAGACGCGACTGGATAGAGGCT : 204543 119 : ThrGluGluGluArgLeuIlePheArgSerLysThrLysIleGlyArgArgValValL : 138 |||!!:|||.!.|||||||||||||||||||||.!!||||||||||||||||||:!!| ThrAspGluAsnArgLeuIlePheArgSerLysAlaLysIleGlyArgArgValLeuL 204544 : ACGGATGAAAATCGGTTGATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGC : 204603 139 : euIleValAlaPheThrMetTyrGlyGlyGlyLeuCysTyrArgMetIleLeuProLe : 157 |||||!.!||| !||||||||||||||||||||||||||||||! !||||||||||| euIleAlaAlaAlaThrMetTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLe 204604 : TGATTGCAGCCGCCACTATGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTT : 204660 158 : uLeuLysGlyThrIleValThrAlaAsnAsnThrThrIleArgAlaLeuProCysPro : 176 ||||!:!||||||||||||||| !!:!!|||..!||||||||| !!|||||||||||| uLeuArgGlyThrIleValThrProAspAsnValThrIleArgProLeuProCysPro 204661 : GTTGAGAGGAACGATCGTAACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCG : 204717 177 : SerTyrPheLeuIleLeuAsnGluGlnGlnSerProIleTyrGluIleLeuPheValL : 196 !||||||:::......|||||||||!::||||||! !|||||||||:!!|||:!!| ValTyrPheValPhePheAsnGluGlnArgSerProAsnTyrGluIleValPheIleL 204718 : GTTtactttgttttctttaacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATAC : 204777 197 : euGlnIleIleAlaGlyIleAlaIleTyrAlaValIleCysGlyPheCysGlyIlePh : 215 ||||||||!!:||||||.!!!.!! !|||||||||||| !!||| ||||||!!:! euGlnIleMetAlaGlyPheValThrTyrAlaValIleSerGlyThrCysGlyMetCy 204778 : TGCAAATTATGGCTGGTTTTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTG : 204834 216 : eAlaLeuLeuValLeuHisAlaTrpSerMetLeuArgIleLeuValAsnLysIleLys : 234 !||||||!!!||||||||||||!! |||||||||||||||||||||||||||!!:!!. sAlaLeuPheValLeuHisAlaCysSerMetLeuArgIleLeuValAsnLysMetAsn 204835 : CGCGCTGTTCGTTCTCCACGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAAC : 204891 235 : LysLeuValAspLysSerAspMetSerGluValValLeuGlnArgLysIleMetAspI : 254 !||||||||||||:!!||||||!!!|||..!:!!:!!!!.||||||||| |||| AlaLeuValAspLysAlaAspMetThrGluThrLeuValHisArgLysIleAlaAspI 204892 : GCACTTGTGGATAAGGCGGACATGACCGAGACACTTGTGCACAGGAAGATCGCTGATA : 204951 255 : leValGluTyrGlnMetLysIleArgGly{Gl} >>>> Target Intron 1 >> : 264 ||||||||||||||! !||||||!:! {..} 905 bp leValGluTyrGlnThrLysIleLys---{Ar}++ 204952 : TTGTTGAATATCAGACGAAGATAAAG---{AG}gt....................... : 204982 265 : >> {u}PheLeuLysAsnIleGluThrIleThrGluTyrIleCysLeuIleGluMet : 281 {!}||||||||||||||||||||||||||||||||||||||||||! !|||||| ++{g}PheLeuLysAsnIleGluThrIleThrGluTyrIleCysLeuThrGluMet 204983 : ..ag{A}TTTTTAAAGAACATTGAAACAATTACAGAGTACATTTGTTTAACCGAAATG : 205934 282 : IleGlySerThrCysMetIleCysLeuValGlyTyrCysIleLeuMet >>>> Tar : 298 :!:|||.!!||| !!:!::!!||||||||| !|||! !||||||||| ValGlyGlyThrGlyLeuValCysLeuValTyrTyrTyrIleLeuMet++ 205935 : GTGGGCGGTACGGGTCTAGTATGTCTCGTGTATTATTACATTCTCATGgt........ : 205987 299 : get Intron 2 >>>> GluTrpGluAsnThrAsnThrMetAlaIleValIleTyr : 310 66 bp ||||||||||||!.!||||||! |||:!!:!!:!:||| ++GluTrpGluAsnAsnAsnThrThrAlaValIleValTyr 205988 : .................agGAATGGGAGAACAATAATACAACAGCGGTTATAGTGTAC : 206087 311 : IleThrIleGlnIleSerIleIlePheCysValPheIleLeuCysTyrIleGlyGlnM : 330 ||||||:!:||||||||| !! !|||||||||||||||||||||||||||||||||: IleThrLeuGlnIleSerCysThrPheCysValPheIleLeuCysTyrIleGlyGlnL 206088 : ATCACGTTGCAGATATCTTGTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGC : 206147 331 : etLeuValAspGlu >>>> Target Intron 3 >>>> AsnTyrIleValSer : 339 !:|||:!!|||:!! 81 bp |||:!!:!!|||.!! euLeuIleAspGln++ ++AsnHisValValGly 206148 : TTCTTATCGATCAAgt.........................agAACCACGTCGTGGGA : 206255 340 : GlnAlaSerSerThrValAsnTrpTyrArgLeuSerIleLysAsnMetArgCysLeuI : 359 !.!!|||!!!||||||||||||||||||||| !!! !!:!:!! !|||! !:!!| LeuThrSerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgSerMetI 206256 : TTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGA : 206315 360 : leLeuIleIleAlaMetSerAsnHisProMetLysLeuLysAlaAlaLysMetMetGl : 378 |||||||||||||||||||||||:!!|||!!:||||||! !|||!.!||||||.!.|| leLeuIleIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMetPheGl 206316 : TACTGATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGA : 206372 379 : uMetSerLeuIleThrPheThrAsp >>>> Target Intron 4 >>>> IleM : 388 |||||||||| !!:!||||||||| 1161 bp :!!| uMetSerLeuAlaSerPheThrAsp++ ++ValM 206373 : AATGTCTTTAGCTAGTTTCACCGATgt.........................agGTAA : 207563 389 : etLysValSerMetGlyTyrLeuAsnIleLeuArgGluIleIle : 402 ||||||||:!!|||||||||!!!|||||||||||||||:!!:!! etLysValAlaMetGlyTyrPheAsnIleLeuArgGluValVal 207564 : TGAAGGTGGCGATGGGATACTTCAACATACTCCGTGAAGTCGTA : 207607 vulgar: AfOr17 2 402 . KQ414889.1 204197 207607 + 1380 M 260 780 G 1 0 S 0 2 5 0 2 I 0 901 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 52 156 5 0 2 I 0 1157 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204198 207607 1380 + . gene_id 1 ; sequence AfOr17 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 204198 204979 . + . KQ414889.1 exonerate:protein2genome:local exon 204198 204979 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 204980 204981 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 204980 205884 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 205883 205884 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 205885 205984 . + . KQ414889.1 exonerate:protein2genome:local exon 205885 205984 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 205985 205986 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 205985 206050 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 206049 206050 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206398 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206398 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206399 206400 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206399 207559 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 207558 207559 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 207560 207607 . + . KQ414889.1 exonerate:protein2genome:local exon 207560 207607 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 204198 207607 1380 + . alignment_id 1 ; Query AfOr17 ; Align 204198 3 780 ; Align 205886 265 99 ; Align 206051 298 111 ; Align 206243 335 156 ; Align 207560 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr17 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 416 Query range: 28 -> 387 Target range: 212911 -> 215022 29 : GlyAlaTrpProIleSerProSerThrSerPhePheSerLysValLeuGlnArgSerL : 48 ||| !|||||| !!.! !!! !..!||| .!!..!||| !:!! |||! ! GlyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIleAlaArgLeuV 212912 : GGTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGG : 212969 49 : ysHisIlePheThrTyrPheLeuPhePheLeuIleMetIleProThrLeuMetTyrVa : 67 :!!! ! !! !||| !|||.!! !! !:!!:!:|||||| ! !:!!||||| alAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrVa 212970 : TCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGT : 213026 68 : lPheLeuLysGluLysAsnAsnLysMetArgLeuLysLeuMetProProIleIleAsn : 86 ||||||| ! ! !:::||| ...:!!:!!|||.!. ! !.!! ! ! lPheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPhe 213027 : GTTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTT : 213083 87 : CysSerIleGlnPhePheLysTyrThrIleIleLeuTrpArgArgLysGluIleGlnG : 106 ||| ! ! !.!.!::|||||| ! :!::!! !.! !! ! !!:|||!:: CysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgT 213084 : TGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTA : 213143 107 : luGlyLeuTyrAlaIleLysHisAspTrpIleLysAlaThr<->GluGluGluArgLe : 124 ! !!:!! ! !!!:|||:!!||||||! !!. !||| ||||||!!:!:! hrCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGl 213144 : CGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGA : 213200 125 : uIlePheArgSerLysThrLysIleGlyArgArgValValLeuIleValAlaPheThr : 143 !|||.!. !! !!!..!!!...!!|||!:!|||:!!||| !||| !|||||| ! uIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPhePhe 213201 : AATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTC : 213257 144 : MetTyrGlyGlyGlyLeuCysTyrArgMetIleLeuProLeuLeuLysGlyThrIleV : 163 |||||| !||| ! !! !||| !:!::!!:!!|||:!! ! !! !! !!!:| MetTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLysMetV 213258 : ATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGG : 213317 164 : alThrAlaAsn<->AsnThrThrIleArgAlaLeuProCysProSerTyrPheLeuIl : 181 ||.!!! !:!! |||..!|||.!!||| !:!! ! !||| !! !!!|| alAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSerArgPheIl 213318 : TAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTAT : 213374 182 : eLeuAsnGluGlnGlnSerProIleTyrGluIleLeuPheValLeuGlnIleIleAla : 200 |:!!:!!! !:! ! ||||||:!: !!||||||!!!|||:!!:!!|||||||||||| eValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleIleAla 213375 : CGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCT : 213431 201 : GlyIleAlaIleTyrAlaValIleCysGlyPheCysGlyIlePheAlaLeuLeuValL : 220 |||:!! !|||:!!|||:!! ! ! !|||.!!:!: |||:!!!!!!.!: GlyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPheAlaV 213432 : GGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGG : 213491 221 : euHisAlaTrpSerMetLeuArgIleLeuValAsnLysIleLysLysLeuValAspLy : 239 !!||||||!! .!!..!:!! !!||||||:!!!:! !:!::!! ! |||:!!||| alHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGl 213492 : TTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGG : 213548 240 : sSerAspMetSerGluValValLeuGlnArgLysIleMetAspIleValGluTyrGln : 258 !!!!!: ! !... ! !:!!.!. !!:!||| !! !||||||.!. ! !!. yArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleValAsnGlnHis 213549 : TAGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCAT : 213605 259 : MetLysIleArg{Gl} >>>> Target Intron 1 >>>> {y}GluPheLeuL : 267 :!!::!|||! !{ } 840 bp {!} ||||||: ValArgIleLeu{Ly}++ ++{s}---PheLeuG 213606 : GTGCGGATACTG{AA}gt.........................ag{A}---TTCTTAG : 214469 268 : ysAsnIleGluThrIleThrGluTyrIleCysLeuIleGluMetIleGlySerThrCy : 286 !! !:!:|||! ! ! !..! ! :!!! !!!! !|||:!::!!! !!!!||| luLeuValGluLysAlaLeuArgGlnValSerPheAlaGluLeuLeuValCysThrVa 214470 : AGCTCGTGGAGAAAGCACTTCGGCAAGTATCTTTCGCTGAATTATTAGTATGCACGGT : 214526 287 : sMetIleCysLeuValGlyTyrCysIleLeuMet >>>> Target Intron 2 > : 298 ! :!!|||||||||||||||! !|||:!!! ! 68 bp lAsnLeuCysLeuValGlyTyrTyrIleIleThr++ 214527 : GAATCTCTGTCTCGTTGGATATTACATAATAACGgt...................... : 214564 299 : >>> GluTrpGluAsnThrAsnThrMetAlaIleValIleTyrIleThrIleGlnIl : 315 ||||||.!.:::!.!||| !! .!!! !|||! !|||:!:..!:!: ! || ++GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValValLeuTyrIl 214565 : ...aggAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGGTGTTGTATAT : 214681 316 : eSerIleIlePheCysValPheIleLeuCysTyrIleGlyGlnMet{Le} >>>> T : 331 ||||::: ||| :::||||||...||||||||||||:!!:!:{:!} eSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeu{Va}++ 214682 : CTCTCtcactttcaatattttcatattttgttaCATAGGCGAGCTT{GT}gt...... : 214733 332 : arget Intron 3 >>>> {u}ValAspGluAsnTyrIleValSerGlnAlaSerS : 343 123 bp {!}:!!.!.:!! ! ! ! |||.!!:!!!.!|||! +-{l}LeuGlnGlnCysLysLysValGlyGluValSerT 214734 : ...................at{G}TTACAACAGTGCAAAAAGGTCGGAGAAGTATCGT : 214888 344 : erThrValAsnTrpTyrArgLeuSerIleLysAsnMetArgCysLeuIleLeuIleIl : 362 !! !:!!.!.|||||||||||| !! !!!.!!.! !! !|||! !|||||||||!! yrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMe 214889 : ACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCAT : 214945 363 : eAlaMetSerAsnHisProMetLysLeuLysAlaAlaLysMetMetGluMetSerLeu : 381 :|||||||||||| !!:!:|||!!!! !|||!.!!!.|||:!:|||:!!|||:!! tAlaMetSerAsnSerSerValLysPheThrAlaGlyAsnMetValGluLeuSerIle 214946 : GGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATC : 215002 382 : IleThrPheThrAspIle : 387 ! !||||||!:!..!:!! SerThrPheSerSerVal 215003 : AGCACTTTCAGCAGTGTA : 215022 vulgar: AfOr17 28 387 . KQ414889.1 212911 215022 + 416 M 91 273 G 0 3 M 47 141 G 0 3 M 96 288 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 G 1 0 M 33 99 5 0 2 I 0 64 3 0 2 M 33 99 S 0 2 5 0 2 I 0 119 3 0 2 S 1 1 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212912 215022 416 + . gene_id 2 ; sequence AfOr17 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212912 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 212912 213621 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214561 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214730 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214730 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214731 214732 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214731 214853 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 214852 214853 . + . intron_id 2 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 214854 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214854 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212912 215022 416 + . alignment_id 2 ; Query AfOr17 ; Align 212912 29 273 ; Align 213188 120 141 ; Align 213332 167 288 ; Align 214463 265 99 ; Align 214630 298 99 ; Align 214855 332 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr17 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 380 Query range: 10 -> 334 Target range: 217159 -> 219439 11 : GluGluAspLeuLysTyrAlaThrArgPheValLysProIleMetGlyMetIleGlyA : 30 |||:::::::::... ::!! !!:!!:: !::: !:!::!! ! !!!:||| GluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyL 217160 : gagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTC : 217217 31 : laTrpProIleSerProSerThrSerPhePheSerLysValLeuGlnArgSerLysHi : 49 !||||||! !|||! !!!!|||!!! ! ! !!|||:!!||| ! !:! !! !:! euTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAs 217218 : TTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAA : 217274 50 : sIlePheThrTyrPheLeuPhePheLeuIleMetIleProThrLeuMetTyrValPhe : 68 ! !!!. !||| !|||.!. !!!!:!!.!.:!!||| !! !|||||||||||| nAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPhe 217275 : CGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTC : 217331 69 : LeuLysGluLysAsnAsnLysMetArgLeuLysLeuMetProProIleIleAsnCysS : 88 |||:!!! :!!:!! ! ! !:!|||||||||.!. !|||:!:||| !||| LeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysV 217332 : CTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCG : 217391 89 : erIleGlnPhePheLysTyrThrIleIleLeuTrpArgArgLysGluIleGlnGluGl : 107 !!!: !||| !!|||||| ! !:!::!! !.!!:! !!!:|||!::||| ! alMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCy 217392 : TGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTG : 217448 108 : yLeuTyrAlaIleLysHisAspTrpIleLysAla<->ThrGluGluGluArgLeuIle : 125 !:!! !|||:!!!..||||||! !!.!.! !|||:!!!!:||| ! sValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArgGluAla 217449 : CGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCG : 217505 126 : PheArgSerLysThrLysIleGlyArgArgValValLeuIleValAlaPheThrMetT : 145 .!.! ! !!!..!!!!..!!||||||!:!:!!||||||:!! !.!!||| !|||| MetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetT 217506 : ATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGT : 217565 146 : yrGlyGlyGlyLeuCysTyrArgMetIleLeuProLeuLeuLysGlyThrIleValTh : 164 ||.!!||| ::: ||| ::: !:!!|||:!! ! !|||! !|||:!!:! yrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSe 217566 : ACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATC : 217622 165 : rAlaAsn<->AsnThrThrIleArgAlaLeuProCysProSerTyrPheLeuIleLeu : 182 !! !||| ||| !|||.!!! ! !!||| !! !|||! ! ! !|||:!! rGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyrIleIle 217623 : GGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATC : 217679 183 : AsnGluGlnGlnSerProIleTyrGluIleLeuPheValLeuGlnIleIleAlaGlyI : 202 :!! !:: ! !!!|||! !!||||||:!!||| !!||||||:!:||||||||| AspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyA 217680 : GATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAG : 217739 203 : leAlaIleTyrAlaValIleCysGlyPheCysGlyIlePheAlaLeuLeuValLeuHi : 221 ! !!!::!!!.!:!!! ! !.! !|||.!!:!: ||| !!!!!.!:!!|| laLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHi 217740 : CTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCA : 217796 222 : sAlaTrpSerMetLeuArgIleLeuValAsnLysIleLysLysLeuValAspLysSer : 240 ||||!! .!!..!:!!..!:!:|||:!!||| !:!::!! ! |||:!!||| !!! sAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArg 217797 : TGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGA : 217853 241 : AspMetSerGluValValLeuGlnArgLysIleMetAspIleValGluTyrGlnMetL : 260 ! ! !...! !..!:!!.!. !!!:!||| !..!||||||... ! !!.:!:: AlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnHisValA 217854 : GCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTC : 217913 261 : ysIleArgGlyGluPheLeuLysAsnIle{G} >>>> Target Intron 1 >>> : 270 :!||| ! ! ! ! !!! !:!!{|} 1226 bp rgIleLeuLysCysValArg***IleVal{G}++ 217914 : GGATATTAAAGTGTGTAAGATAGATCGTT{G}gt........................ : 217946 271 : > {lu}ThrIleThrGluTyrIleCysLeuIleGluMetIleGlySerThrCysMet : 287 {||}! !! ! !:!! ! |||! !!!! !|||.!.:!!|||!!!||| ++{lu}ArgThrLeuGlnGlnIleSerPheAlaGluPheLeuGlyCysThrMetAsp 217947 : .ag{AG}AGAACCCTCCAGCAAATCTCTTTCGCTGAATTTCTAGGATGCACCATGGAC : 219220 288 : IleCysLeuValGlyTyrCysIleLeuMet >>>> Target Intron 2 >>>> : 298 ||||||||||||||||||! !|||:!!:!! 76 bp IleCysLeuValGlyTyrTyrIleIleVal++ + 219221 : ATATGTCTCGTTGGATATTACATTATCGTGgt.........................a : 219327 299 : GluTrpGluAsnThrAsnThrMetAlaIleValIleTyrIleThrIleGlnIleSer : 316 ||||||:!!:::!.!:!!..!! !::! !|||! !||||||! !:!!! |||||| +GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSer 219328 : gGAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCC : 219383 317 : IleIlePheCysValPheIleLeuCysTyrIleGlyGlnMetLeuValAspGlu : 334 :!: ||| :::||||||...||||||||||||:!!!!::!!!.!!!::!: LeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln 219384 : CTcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: AfOr17 10 334 . KQ414889.1 217159 219439 + 380 M 108 324 G 0 3 M 48 144 G 0 3 M 103 309 S 0 1 5 0 2 I 0 1222 3 0 2 S 1 2 M 27 81 5 0 2 I 0 72 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217160 219439 380 + . gene_id 3 ; sequence AfOr17 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217160 217943 . + . KQ414889.1 exonerate:protein2genome:local exon 217160 217943 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217944 217945 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217944 219169 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219168 219169 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219170 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219170 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217160 219439 380 + . alignment_id 3 ; Query AfOr17 ; Align 217160 11 324 ; Align 217487 119 144 ; Align 217634 167 309 ; Align 219172 271 81 ; Align 219329 298 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr17 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 348 Query range: 8 -> 334 Target range: 232438 -> 234914 9 : LysAlaGluGluAspLeuLysTyrAlaThrArgPheValLysProIleMetGlyMetI : 28 !!.||| !..!|||! !:!!|||::!! !!:! ! !::: !.!!:!! ! !! AsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProM 232439 : AACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGA : 232496 29 : leGlyAlaTrpProIleSerProSerThrSerPhePheSerLysValLeuGlnArgSe : 47 !:|||||||||||| ! ! !!..!|||||| !..!:!!:!!||| !!:! etGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLe 232497 : TGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACT : 232553 48 : rLysHisIlePheThrTyrPheLeuPhePheLeuIleMetIleProThrLeuMetTyr : 66 ! !...:!! ! !:!!! !|||.!..!!! ! !!::!!||| !:!!:!!!:! uLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPhe 232554 : GTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTC : 232610 67 : ValPheLeuLysGluLysAsnAsnLysMetArgLeuLysLeuMetProProIleIleA : 86 :!!.!.!!!:!!!!:! !!:! :!! |||:!!|||! !!!: !|||!!:! !: IleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerH 232611 : ATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTC : 232670 87 : snCysSerIleGlnPhePheLysTyrThrIleIleLeuTrpArgArgLysGluIleGl : 105 !!! ! !!!: !!.!!.||| ! !:!:||| !:! !!!.!!:|||! isPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLe 232671 : ACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCT : 232727 106 : nGluGlyLeuTyrAlaIleLysHisAspTrpIleLysAlaThrGluGlu<->GluArg : 123 ! !!:!! ! !:!:|||!!.|||||| !!!.!.!! !:!! .!.||| uTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArg 232728 : CTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGT : 232784 124 : LeuIlePheArgSerLysThrLysIleGlyArgArgValValLeuIleValAlaPheT : 143 !:!:.!. !!.!!!..!!|||:!!|||||| !:!!!.!! !|||!.!|||||| AspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheC 232785 : GATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTT : 232844 144 : hrMetTyrGlyGlyGlyLeuCysTyrArgMetIleLeuProLeuLeuLysGlyThrIl : 162 !|||:!! !|||! ! !! ! !!..!!!::!! ! !|||! !! !.!!|||.! ysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPh 232845 : GCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTT : 232901 163 : eValThrAlaAsnAsnThr<->ThrIleArgAlaLeuProCysProSerTyrPheLeu : 180 ! !..!!.!|||.!.!:! :!!!!: ! !!||||||||| !!! !||| ! eTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLys 232902 : CTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAG : 232958 181 : IleLeuAsnGluGlnGlnSerProIleTyrGluIleLeuPheValLeuGlnIleIleA : 200 :!::!!:!! ::! ||||||! !!||||||:!!|||||||||||| !:!!: LeuMetAspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuS 232959 : CTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCT : 233018 201 : laGlyIleAlaIleTyrAlaValIleCysGlyPheCysGlyIlePheAlaLeuLeuVa : 219 !!|||.!! !:!: !!:!!|||! ! ||| !||||||:!! !|||:!!|||!. erGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAl 233019 : CCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGC : 233075 220 : lLeuHisAlaTrpSerMetLeuArgIleLeuValAsnLysIleLysLysLeuValAsp : 238 !:!!||||||!! .!!..!|||!.!:!::!!:!!:::|||:!: ! ! ||||||||| aMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAsp 233076 : GATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGAC : 233132 239 : LysSerAspMetSerGluValValLeuGlnArgLysIleMetAspIleValGluTyrG : 258 !!.!! ..!..!||| !||| !|||||||||:!! !|||||||||:!!! AlaLysGlyGlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisH 233133 : GCGAAAGGGCAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATC : 233192 259 : lnMetLysIleArgGly{Gl} >>>> Target Intron 1 >>>> {u}PheLe : 266 !.:!!:::! ! ! {..} 1315 bp {.}|||:! isLeuArgThrLeu---{Se}++ ++{r}PheIl 233193 : ATTTGCGTACATTA---{AG}gt.........................ag{T}TTTAT : 234528 267 : uLysAsnIleGluThrIleThrGluTyrIleCysLeuIleGluMetIleGlySerThr : 285 !::!|||||||||!.!:!!! !.!. |||||||||:!!|||:!!:!!|||!!!||| eArgAsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuValGlyCysThr 234529 : ACGGAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACG : 234585 286 : CysMetIleCysLeuValGlyTyrCysIleLeuMet >>>> Target Intron 2 : 298 ! ! !!:|||:!!:!!! !|||! !:!!|||! ! 189 bp LeuAsnMetCysMetLeuGluTyrTyrLeuLeuThr++ 234586 : TTGAACATGTGCATGCTCGAGTATTATTTACTCACGgt.................... : 234626 299 : >>>> GluTrpGluAsnThrAsnThrMetAlaIleValIleTyrIleThrIleGln : 314 ||| ! ::: :::..! !|||:!!! !:!: ! ++Glu---------LysSerLysGluLysLeuAlaSerTyrValIleValTyr 234627 : .....agGAA---------AAgtcgaaggaaaaattagCTTCATACGTCATCGTGTAC : 234852 315 : IleSerIleIlePheCysValPheIleLeuCysTyrIleGlyGlnMetLeuValAspG : 334 :!:|||!!:! !||| :::||||||...||||||||||||:!!! !|||..!!!:: ValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluG 234853 : GTGTCCATGACATTtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGC : 234912 335 : lu : 334 !! ln 234913 : AG : 234914 vulgar: AfOr17 8 334 . KQ414889.1 232438 234914 + 348 M 113 339 G 0 3 M 47 141 G 0 3 M 94 282 G 1 0 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 33 99 5 0 2 I 0 185 3 0 2 M 1 3 G 3 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232439 234914 348 + . gene_id 4 ; sequence AfOr17 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232439 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232439 233208 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 232439 234914 348 + . alignment_id 4 ; Query AfOr17 ; Align 232439 9 339 ; Align 232781 122 141 ; Align 232925 169 282 ; Align 234525 265 99 ; Align 234813 298 3 ; Align 234816 302 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr17 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 278 Query range: 10 -> 261 Target range: 221363 -> 222122 11 : GluGluAspLeuLysTyrAlaThrArgPheValLysProIleMetGlyMetIleGlyA : 30 :!! !:!!:!!|||! ::!..!!:!!!. !::: !|||:!! ! !||||||! LysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleGlyV 221364 : AAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTG : 221421 31 : laTrpProIleSerProSerThrSerPhePheSerLysValLeuGlnArgSerLysHi : 49 .!||||||! !||| !!!:!! !||| ! ..!!:! !||| ! !! !! !:! alTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLeuIleAs 221422 : TTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAA : 221478 50 : sIlePheThrTyrPheLeuPhePheLeuIleMetIleProThrLeuMetTyrValPhe : 68 !:!! !! !||| !|||.!! !!!:!!:!!:!!||| ! !:!:||||||.!! nValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyrValIle 221479 : CGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATC : 221535 69 : LeuLysGluLysAsnAsnLysMetArgLeuLysLeuMetProProIleIleAsnCysS : 88 |||:!!! !:!!:!! ! ! ! |||:!!||||||:!! !|||:!:! ! !||| LeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysV 221536 : CTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCG : 221595 89 : erIleGlnPhePheLysTyrThrIleIleLeuTrpArgArgLysGluIleGlnGluGl : 107 !!!: !|||.!.|||||| !:!::!::!! !..!!!.!!:|||!::||| ! alMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCy 221596 : TGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTG : 221652 108 : yLeuTyrAlaIleLysHisAspTrpIleLysAlaThr<->GluGluGluArgLeuIle : 125 !:!! ! !|||:!! ||||||! !!. !||| ...:!!!!:!:! !||| sIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLysAspIle 221653 : CATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAGGATATA : 221709 126 : PheArgSerLysThrLysIleGlyArgArgValValLeuIleValAlaPheThrMetT : 145 .!.! !..!!!..!!! .!!|||||||||:!!:!!:!!||| !.!!||| !|||| MetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheMetT 221710 : ATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGT : 221769 146 : yrGlyGlyGlyLeuCysTyrArgMetIleLeuProLeuLeuLysGlyThrIleValTh : 164 ||.!!||| ::: ||| ::: !:!!|||!!! ! !|||! !||| !.! yrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIleProAl 221770 : ACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGC : 221826 165 : rAlaAsn<->AsnThrThrIleArgAlaLeuProCysProSerTyrPheLeuIleLeu : 182 ! !:!! |||...|||... !!:!! !! !|||! !! !!!|||:!! aGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPheIleVal 221827 : GCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTC : 221883 183 : AsnGluGlnGlnSerProIleTyrGluIleLeuPheValLeuGlnIleIleAlaGlyI : 202 :!! !:! ! ||||||:!! !!|||||||||||| !|||||||||!!:|||||| AspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyA 221884 : GATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTG : 221943 203 : leAlaIleTyrAlaValIleCysGlyPheCysGlyIlePheAlaLeuLeuValLeuHi : 221 ! !!!::!!::!:!!! !! !.! !|||.!!:!: !!|||:!!!!!!.!:!!|| laLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaValHi 221944 : CTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCA : 222000 222 : sAlaTrpSerMetLeuArgIleLeuValAsnLysIleLysLysLeuValAspLysSer : 240 ||||!! .!!..!:!!!:!:!:|||:!!!:! !:!:||| ! |||:!!:!! !! sAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsnGlyArg 222001 : CGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGCCGG : 222057 241 : AspMetSerGluValValLeuGlnArgLysIleMetAspIleValGluTyrGlnMetL : 260 ! ! ! ! !:!!.!.|||!:!||| ! ! ||||||.!. ! !!.:!:: AlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnHisValA 222058 : GCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAACACGTTC : 222117 261 : ysIle : 261 :!||| rgIle 222118 : GAATA : 222122 vulgar: AfOr17 10 261 . KQ414889.1 221363 222122 + 278 M 109 327 G 0 3 M 47 141 G 0 3 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221364 222122 278 + . gene_id 5 ; sequence AfOr17 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221364 222122 . + . KQ414889.1 exonerate:protein2genome:local exon 221364 222122 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221364 222122 278 + . alignment_id 5 ; Query AfOr17 ; Align 221364 11 327 ; Align 221694 120 141 ; Align 221838 167 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr17 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 275 Query range: 15 -> 400 Target range: 262849 -> 265004 16 : TyrAlaThrArgPheValLysProIleMetGlyMetIleGlyAlaTrpProIleSerP : 35 |||::! !!:!.!. !::! !:!::!! ! !|||||||||||||||:!:||| TyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerA 262850 : TACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCG : 262907 36 : roSerThrSerPhePheSerLysValLeuGlnArgSerLysHisIlePheThrTyrPh : 54 !!|||! !||| .!...!::!:!!:!! ! ! ! ! !:!! !! !|||! laSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCy 262908 : CCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTG : 262964 55 : eLeuPhePheLeuIleMetIleProThrLeuMetTyrValPheLeuLysGluLysAsn : 73 !|||.!..!.! !! !:!:||||||:!!:!!:!::!!:!! !!|||:!!! :!!||| sLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsn 262965 : TCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAAT : 263021 74 : AsnLysMetArgLeuLysLeuMetProProIleIleAsnCysSerIleGlnPhePheL : 93 ! ! |||!:!|||:!!:!!:!: !|||:!! !.!.!! ! !:!! .!..!!! PheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleA 263022 : TTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCA : 263081 94 : ysTyrThrIleIleLeuTrpArgArgLysGluIleGlnGluGlyLeuTyrAlaIleLy : 112 !.|||||| :!:||| !.!!!!|||!!:||||||! !!:!! ! !:!::! snTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGl 263082 : ATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCA : 263138 113 : sHisAspTrpIleLysAlaThrGlu<->GluGluArgLeuIlePheArgSerLysThr : 130 !.!.|||||| !! !.!|||..! |||!!:!:!! !|||.!.! !!.!!!..!! nGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAla 263139 : GGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCG : 263195 131 : LysIleGlyArgArgValValLeuIleValAlaPheThrMetTyrGlyGlyGlyLeuC : 150 ||| !|||||| !|||!.! ! ! !|||.!! !||| ! !.!! !:!!| LysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetC 263196 : AAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGT : 263255 151 : ysTyrArgMetIleLeuProLeuLeuLysGlyThrIleValThrAlaAsnAsnThrTh : 169 || ! !!:!::!! ! !!!!! !! ! !..!|||! ! !!.!|||.!.|||! ysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrAr 263256 : GCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAG : 263312 170 : rIle<->ArgAlaLeuProCysProSerTyrPheLeuIleLeuAsnGluGlnGlnSer : 187 !||| ||| !|||||||||||| !||| !|||:!! ! .!. !!:! gIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThrAsn 263313 : AATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAAT : 263369 188 : ProIleTyrGluIleLeuPheValLeuGlnIleIleAlaGlyIleAlaIleTyrAlaV : 207 |||! !!||||||!!!.!!!.! !|||.!!:!::!!|||.!! !:!! !|||. ProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaT 263370 : CCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGA : 263429 208 : alIleCysGlyPheCysGlyIlePheAlaLeuLeuValLeuHisAlaTrpSerMetLe : 226 .!! ! !||| !! !|||!!: |||:!!!!!!.! !||||||!! .!!..!|| hrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLe 263430 : CAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTT : 263486 227 : uArgIleLeuValAsnLysIleLysLysLeuValAspLysSer<->AspMetSerGlu : 244 |!.!:!:|||:!!::! !|||! !:!!!!!|||:!!:!!||| ||| !!:!:!! uAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLys 263487 : GAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAG : 263543 245 : ValValLeuGlnArgLysIleMetAspIleValGluTyrGlnMetLysIleArg{Gl} : 263 !:!!! ! ! !:!!||| ! |||||||||:!!!!.:!!!:!:!!! !{.!} AsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeu{Se} 263544 : AATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTG{AG} : 263600 264 : >>>> Target Intron 1 >>>> {y}GluPheLeuLysAsnIleGluThrIl : 272 828 bp {!}.!.||||||...! ! !:!!! !:! ++ +-{r}AsnPheLeuSerIleAlaGlnIleVa 263601 : gt.........................at{T}AACTTTTTATCTATTGCACAAATTGT : 264455 273 : eThrGluTyrIle--CysLeuIleGluMetIleGly<->SerThrCysMetIleCysL : 290 :! !::: |||##||||||::::!! :!:..! ..!! ! .!.:!!!! lIleLysThrIle##CysLeuLeuGlnCysLeuSerArgAspIleIlePheVal***A 264456 : GATAAagacaatttttgtttacttcAGTGTTTGTCCAGGGATATAATATTTGTATGAA : 264514 291 : euValGlyTyrCysIleLeuMetGluTrpGluAsnThrAsnThrMetAlaIleValIl : 309 !:!! ! ! !:!!!!!..!|||||||||!:! ::: ... :::..!! snIleThrIleAspValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrTh 264515 : ATATAACAATTGACGTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTAC : 264571 310 : eTyrIleThrIleGlnIleSerIleIlePheCysValPheIleLeuCysTyrIleGly : 328 !|||.!!! !|||! !||||||!!: ! ! !:!!|||:!!:!!|||||||||||| rTyrPheMetIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGly 264572 : ATATTTCATGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGC : 264628 329 : GlnMetLeuValAspGlu >>>> Target Intron 2 >>>> AsnTyrIleVa : 338 :!!!!:|||..!!!:::: 158 bp :!!!:!! :! GluIleLeuThrGluGln++ +-HisPheLysIl 264629 : GAGATATTGACTGAGcaggt.........................atCATTTTAAGAT : 264816 339 : lSerGlnAlaSerSerThrValAsnTrpTyrArgLeuSerIleLysAsnMetArgCys : 357 !..!!::!.! !! !! ! !..!||| ! ! !||| ! :!!:!:!.! ! eGlnArgGlyVal***IleHisArgTrpLysAspThrSerHisValHisValHisIle 264817 : CCAGCGTGGTGTTTAAATTCACCGCTGGAAAGATACTTCACATGTCCATGTACACATT : 264873 358 : LeuIleLeuIleIleAlaMetSerAsnHisProMetLysLeuLysAlaAlaLysMetM : 377 ! ! !! !! .!! !:!:! ! !||| !! !||| !.. ::: : Gln***ArgThrPheArgLeuPheAlaHisLysLysLeuLeuLeuValArgArgLysI 264874 : CAGTGACGTACGTTCCGCTTATTCGCCCACAAAAAACTATTACTCGttcgtagaaaaa : 264933 378 : etGluMetSerLeuIleThrPheThrAspIleMetLysValSerMetGlyTyrLeuAs : 396 ::... ... ... ...:!!!!:||| !|||.!. !|||||||| leArgAspLysGluPheLeuGlnPheGlnValIleLysSerSerPheThrTyrLeuAs 264934 : ttcgtgacaaagaatttttacaatttcaggTAATCAAATCCTCTTTCACGTACTTAAA : 264990 397 : nIleLeuArgGlu : 400 |:!!||||||:!! nLeuLeuArgGln 264991 : CTTACTTCGCCAA : 265004 vulgar: AfOr17 15 400 . KQ414889.1 262849 265004 + 275 M 105 315 G 0 3 M 50 150 G 0 3 M 70 210 G 0 3 M 22 66 S 0 2 5 0 2 I 0 824 3 0 2 S 1 1 M 13 39 F 0 2 M 7 21 G 0 3 M 51 153 5 0 2 I 0 154 3 0 2 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262850 265004 275 + . gene_id 6 ; sequence AfOr17 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262850 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262850 263601 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 264429 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264428 264429 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 264430 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264430 264648 . + . insertions 3 ; deletions 0 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264806 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264805 264806 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 264807 265004 . + . KQ414889.1 exonerate:protein2genome:local exon 264807 265004 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262850 265004 275 + . alignment_id 6 ; Query AfOr17 ; Align 262850 16 315 ; Align 263168 121 150 ; Align 263321 171 210 ; Align 263534 241 66 ; Align 264431 264 39 ; Align 264472 277 21 ; Align 264496 284 153 ; Align 264807 335 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr17 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 260 Query range: 15 -> 261 Target range: 274383 -> 275130 16 : TyrAlaThrArgPheValLysProIleMetGlyMetIleGlyAlaTrpProIleSerP : 35 |||::! !!:!!!. !::! !.!!:!! ! |||||||||||||||:!!:!! TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaS 274384 : TACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCT : 274441 36 : roSerThrSerPhePheSerLysValLeuGlnArgSerLysHisIlePheThrTyrPh : 54 !! !!|||!!! |||..!::!:!!|||..!!.! ...... |||! erProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCy 274442 : CGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTG : 274498 55 : eLeuPhePheLeuIleMetIleProThrLeuMetTyrValPheLeuLysGluLysAsn : 73 !!!!.!..!!! !! !:!:||||||!:!:!!.!.:!!:!!.!.||| !!!::!!!:! sPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGluSer 274499 : CTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGT : 274555 74 : AsnLysMetArgLeuLysLeuMetProProIleIleAsnCysSerIleGlnPhePheL : 93 ! ! :!!!:!|||||||||:!: !|||:!! !:!!!! ! !||| ! .!!! LeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleA 274556 : CTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTA : 274615 94 : ysTyrThrIleIleLeuTrpArgArgLysGluIleGlnGluGlyLeuTyrAlaIleLy : 112 !.||||||! :!:||| |||!!!|||||||||!::! !!:!! ! !!!::! snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 274616 : ATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCA : 274672 113 : sHisAspTrp<->IleLysAlaThrGluGluGluArgLeuIlePheArgSerLysThr : 130 ! |||||| ||| !.!!! ! !|||!!:!:!! !:!:.!. !!.!!!..!! nThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsnAla 274673 : AACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCG : 274729 131 : LysIleGlyArgArgValValLeuIleValAlaPheThrMetTyrGlyGlyGlyLeuC : 150 |||||||||||| !|||!.!:!!.!! !||| !||| ! !!|||! !|||| LysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuC 274730 : AAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCT : 274789 151 : ysTyrArgMetIleLeuProLeuLeuLysGlyThrIleValThrAlaAsnAsnThr<- : 169 ||||| !!:!!||| ! !!!!! !! ! !|||:!! !..!!.!|||.!.||| ysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrAr 274790 : GTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAG : 274846 170 : >ThrIleArgAlaLeuProCysProSerTyrPheLeuIleLeuAsnGluGlnGlnSer : 187 |||:!:!.! !||||||||| !:!!||| !|||:!! ! !.!. !||| gThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThrSer 274847 : AACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGT : 274903 188 : ProIleTyrGluIleLeuPheValLeuGlnIleIleAlaGlyIleAlaIleTyrAlaV : 207 |||! !!||||||:!!.!!!.!! !|||.!!:!::!!|||.!! !:!: !!:!! ProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerS 274904 : CCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGA : 274963 208 : alIleCysGlyPheCysGlyIlePheAlaLeuLeuValLeuHisAlaTrpSerMetLe : 226 ! !||| ! !.!!:!! !|||:!!!!!!.! !||||||!::.!!..!|| erAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLe 274964 : GCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTT : 275020 227 : uArgIleLeuValAsnLysIleLysLysLeuValAspLysSer<->AspMetSerGlu : 244 |!!!:!:|||:!!! !|||! :!!!!!|||:!! ! ||| |||...:::::: uSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsnLys 275021 : GAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaa : 275077 245 : ValValLeuGlnArgLysIleMetAspIleValGluTyrGlnMetLysIle : 261 ||| !:!!||| ! :!!||||||:!!!!.:!!!:!:!! AsnValTyrPheSerGluIleGlyValValValGluHisHisLeuArgVal 275078 : aatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTA : 275130 vulgar: AfOr17 15 261 . KQ414889.1 274383 275130 + 260 M 100 300 G 0 3 M 53 159 G 0 3 M 72 216 G 0 3 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274384 275130 260 + . gene_id 7 ; sequence AfOr17 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274384 275130 . + . KQ414889.1 exonerate:protein2genome:local exon 274384 275130 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274384 275130 260 + . alignment_id 7 ; Query AfOr17 ; Align 274384 16 300 ; Align 274687 116 159 ; Align 274849 169 216 ; Align 275068 241 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr17 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 219 Query range: 12 -> 236 Target range: 194162 -> 194831 13 : AspLeuLysTyrAlaThrArgPheValLysProIleMetGlyMetIleGlyAlaTrpP : 32 ||| !:!!||||||..!||| ! !.!||| !!:!!:!: ! !|||||| !|||| AspThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpP 194163 : GACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGC : 194220 33 : roIleSerProSerThrSerPhePheSerLysValLeuGlnArgSerLysHisIlePh : 51 ||! ..! !||| ! !! ! !::!:!!!!! !:!!!! :!!|| roArgGluAspSerLeuArgAspArgValArgLeuPheAlaGlnThrGlyValValPh 194221 : CAAGGGAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTT : 194277 52 : eThrTyrPheLeuPhePheLeuIleMetIleProThrLeuMetTyrValPheLeuLys : 70 |.!!! .!.! !||| :!!:!!:!!||| !:!!!!:|||..!!:!!!! ! eAlaLeuMetCysPhe------LeuLeuValProHisValIleTyrThrTyrPheAsp 194278 : CGCTTTGATGTGCTTT------CTACTGGTACCTCACGTGATCTACACTTACTTCGAC : 194328 71 : GluLysAsnAsnLysMetArgLeuLysLeuMetProProIleIleAsnCysSerIleG : 90 :!!:!! ! !! ! !:!!|||:!!!!: !! !! !:!: ! !! !:!: CysGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuA 194329 : TGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGG : 194388 91 : lnPhePheLysTyrThrIleIleLeuTrpArgArgLysGluIleGlnGluGlyLeuTy : 109 !.!!.!!|||!:! !! !!::!! !!.!||||||||||||::! !!||| laIleIleLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLe 194389 : CGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCT : 194445 110 : rAlaIleLysHisAspTrpIleLysAla<->ThrGluGluGluArgLeuIlePheArg : 127 ! !!!::!! .!.!::! ! ! !.! !||||||!!:|||! !:!:.!.! ! uGluMetGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThr 194446 : GGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACG : 194502 128 : SerLysThrLysIleGlyArgArgValValLeuIleValAlaPheThrMetTyrGlyG : 147 !:! .!!|||||||||||| ! !!..! !:!: ! ! ! ||||||| AsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyG 194503 : AATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTG : 194562 148 : lyGlyLeuCysTyrArgMetIleLeuProLeuLeuLysGlyThrIleValThrAlaAs : 166 ||!.!||| |||!.!!!:||||||||||||:!!..!! !! !||||||! !! !:! lyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGluAs 194563 : GCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGA : 194619 167 : nAsnThrThrIleArgAlaLeuProCysProSerTyrPheLeuIleLeuAsnGluGln : 185 !|||!:!||| ! ! !!||||||! ! !||| !!!:!:!!.!!!!! :!! pAsnSerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGlu 194620 : TAACAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAA : 194676 186 : GlnSerProIleTyrGluIleLeuPheValLeuGlnIleIleAlaGlyIleAlaIleT : 205 .!.|||||||||||||||||| !||||||! !||||||:!: !.!!! ! !|||! AspSerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleL 194677 : GACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATAT : 194736 206 : yrAlaValIleCysGlyPheCysGlyIlePheAlaLeuLeuValLeuHisAlaTrpSe : 224 :!!..!! !||||||.!!! !.!!:!: !!||| !:!!:!!:!!|||..!!! .! euSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGl 194737 : TGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGG : 194793 225 : rMetLeuArgIleLeuValAsnLysIleLysLysLeu : 236 !:!!!!!..!:!: ! !!..!:!!!::!!! :!! yLeuPheGluValThrSerArgArgMetGluThrIle 194794 : CTTGTTCGAAGTGACCAGCAGAAGGATGGAGACTATT : 194831 vulgar: AfOr17 12 236 . KQ414889.1 194162 194831 + 219 M 44 132 G 2 0 M 60 180 G 0 3 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194163 194831 219 + . gene_id 8 ; sequence AfOr17 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194163 194831 . + . KQ414889.1 exonerate:protein2genome:local exon 194163 194831 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 194163 194831 219 + . alignment_id 8 ; Query AfOr17 ; Align 194163 13 132 ; Align 194295 59 180 ; Align 194478 119 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr17 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 213 Query range: 130 -> 261 Target range: 304476 -> 304863 131 : LysIleGlyArgArgValValLeuIleValAlaPheThrMetTyrGlyGlyGlyLeuC : 150 :!!!!:||||||!.!:!!..!:!!||| !|||.!. !|||||| !|||||| ! GlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrI 304477 : CAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCA : 304534 151 : ysTyrArgMetIleLeuProLeuLeuLysGlyThrIleValThrAlaAsnAsnThrTh : 169 !|||!.!! !:!!:!!! !!!! !! |||||| !||| !! ! !!||| !|| leTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgTh 304535 : TTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTAC : 304591 170 : rIleArgAlaLeuProCysProSerTyrPheLeuIleLeuAsnGluGlnGlnSerPro : 188 ||||!:! !!||| !! !|||!!!||| ! !:!!!!!:!!! ||| !|||||| rIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerPro 304592 : GATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCT : 304648 189 : IleTyrGluIleLeuPheValLeuGlnIleIleAlaGlyIleAlaIleTyrAlaValI : 208 |||||||||:!::!!!:! !!:!!!!. !!!:..!||| !!.!||||||:!!:!!! IleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleT 304649 : ATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAA : 304708 209 : leCysGlyPheCysGlyIlePheAlaLeuLeuValLeuHisAlaTrpSerMetLeuAr : 227 !..!||| !||||||:!! !||||||!!!!.! !||||||!! .!!...:!! hrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAs 304709 : CCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGA : 304765 228 : gIleLeuValAsnLysIleLysLysLeuValAspLysSerAspMetSerGluValVal : 246 !|||:!!:!!::!::!:!: ! ||||||:!!!..!.!!!: |||!!: pIleValMetSerArgLeuGlyAspLeuValAsnSerLysGluSerSerAsp------ 304766 : TATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCATCTGAT------ : 304819 247 : LeuGlnArgLysIleMetAspIleValGluTyrGlnMetLysIle : 261 |||.!.!:!::!:!!!!:!!:|||||||||:!!!!.:!!::!||| LeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIle 304820 : TTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATT : 304863 vulgar: AfOr17 130 261 . KQ414889.1 304476 304863 + 213 M 114 342 G 2 0 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304477 304863 213 + . gene_id 9 ; sequence AfOr17 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304477 304863 . + . KQ414889.1 exonerate:protein2genome:local exon 304477 304863 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 304477 304863 213 + . alignment_id 9 ; Query AfOr17 ; Align 304477 131 342 ; Align 304819 247 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr17 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 296 -> 398 Target range: 305097 -> 305816 297 : MetGluTrpGluAsnThrAsnThrMetAlaIleValIleTyrIleThrIleGlnIleS : 316 ..!!!:||||||!:!!:!||||||:!:::!:!!..!! !|||! !..!:!!! !|||| GlnAspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValLeuLeuIleS 305098 : caGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGTTACTGATAT : 305155 317 : erIleIlePheCysValPheIleLeuCysTyrIleGlyGlnMetLeuValAspGlu : 335 ||:!!! !||| !:!!|||||||||||||||||||||:!!!!:|||:!!!!::!! erValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMetGluLys++ 305156 : CTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTATGGAAAAGgt : 305212 336 : >>>> Target Intron 1 >>>> AsnTyrIleValSerGlnAlaSerSerThrV : 345 413 bp !:! !! !|||.!! !:!!!!!! !! !: ++SerSerSerValGlyLeuSerCysPheMetI 305213 : .........................agAGCAGTAGCGTTGGATTATCCTGTTTTATGA : 305655 346 : alAsnTrpTyrArgLeuSerIleLysAsnMetArgCysLeuIleLeuIleIleAlaMe : 364 !!!:!||||||!.!||| !!! !|||!..!!:!.! !!|||||||||||||||||||| leSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleLeuIleIleAlaMe 305656 : TCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTTTAATCATTGCCAT : 305712 365 : tSerAsnHisProMetLysLeuLysAlaAlaLysMetMetGluMetSerLeuIleThr : 383 ||||!:!:!!||| |||:!!!..|||!.!|||:!::!:!!::!:|||||| !||| tSerSerAsnProAlaLysIleSerAlaGlyLysValValAspLeuSerLeuSerThr 305713 : GTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTATCTTTATCCACA : 305769 384 : PheThrAspIleMetLysValSerMetGlyTyrLeuAsnIleLeu : 398 ||| !:!!:!:! ! !... ... ::::::|||::: PheGlyAsnValSerTyrTyrGlnTyrSerAsnIleSerIleVal 305770 : TTTGGAAACGTGAGTTACTATcaatattccaatatttcaattgtt : 305816 vulgar: AfOr17 296 398 . KQ414889.1 305097 305816 + 205 M 38 114 5 0 2 I 0 409 3 0 2 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305098 305816 205 + . gene_id 10 ; sequence AfOr17 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305098 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305098 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305816 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305816 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305098 305816 205 + . alignment_id 10 ; Query AfOr17 ; Align 305098 297 114 ; Align 305625 335 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr17 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 191 Query range: 10 -> 193 Target range: 294672 -> 295227 11 : GluGluAspLeuLysTyrAlaThrArgPheValLysProIleMetGlyMetIleGlyA : 30 ..!.!.|||:!! ! !!::! !!:!!:! !::! !:!::!! ! !|||||| ArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyL 294673 : AGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTC : 294730 31 : laTrpProIleSerProSer<->ThrSerPhePheSerLysValLeuGlnArgSerLy : 48 !||||||:!!! ! !||| |||||| .!.!:!|||||||||..!! !! ! euTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLe 294731 : TTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCT : 294787 49 : sHisIlePheThrTyrPheLeuPhePheLeuIleMetIleProThrLeuMetTyrVal : 67 ! ! !:: ! !!. ! ! .!.!!!:!!:!::!:||| ! ! !:! ! uIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCys 294788 : GATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGT : 294844 68 : PheLeuLysGluLysAsnAsnLysMetArgLeuLysLeuMetProProIleIleAsnC : 87 ! !!! ! ! |||||| |||:::::!:!!||||||:!! !|||:!!:!! !!! ValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrS 294845 : GTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACT : 294904 88 : ysSerIleGlnPhePheLysTyrThrIleIleLeuTrpArgArgLysGluIleGlnGl : 106 !! !:!!....!..!!!:!|||!:! !:!!:!!! !!:!! ! ! !.!!:!!.! erMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHi 294905 : CTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCA : 294961 107 : uGlyLeuTyrAlaIleLysHisAspTrp<->IleLysAlaThrGluGluGluArgLeu : 124 . !!:!! ! ! !|||:!!:!!|||||| :!:! ! !!.! !|||.!.||| ! sCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAla 294962 : TTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCG : 295018 125 : IlePheArgSerLysThrLysIleGlyArgArgValValLeuIleValAlaPheThrM : 144 |||.!.! !!.!!!..!!! !:!! !!:!|||:!!..!:!! ! !!.!!.!!! !! IleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleI 295019 : ATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAA : 295078 145 : etTyrGlyGlyGlyLeuCysTyrArgMetIleLeuProLeuLeuLysGlyThrIleVa : 163 !:|||.!!..!!.!:!!! |||!.! |||:::|||...............:!:! leTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGl 295079 : TCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGA : 295135 164 : lThrAlaAsnAsnThrThrIleArgAlaLeuProCysProSerTyrPheLeuIleLeu : 182 !!.! !!!.|||!.!|||||||||||||||||| !|||.!!||| |||.!!:!! uAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheVal 295136 : GAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTA : 295192 183 : AsnGluGlnGlnSerProIleTyrGluIleLeu : 193 :!!! ! ...||||||! !|||||||||:!! AspAlaTyrSerSerProThrTyrGluIleIle 295193 : GACGCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: AfOr17 10 193 . KQ414889.1 294672 295227 + 191 M 26 78 G 0 3 M 79 237 G 0 3 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294673 295227 191 + . gene_id 11 ; sequence AfOr17 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294673 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294673 295227 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294673 295227 191 + . alignment_id 11 ; Query AfOr17 ; Align 294673 11 78 ; Align 294754 37 237 ; Align 294994 116 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr17 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 189 Query range: 275 -> 397 Target range: 286812 -> 287252 276 : IleCysLeuIleGluMetIleGlySerThrCysMetIleCysLeuValGlyTyrCysI : 295 :!:|||! ! !.!.! :!! !:!!! ! ! .!! !:!! !..!! ! : LeuCysTyrTyrHisThrValMetAlaIleIleAlaPheValMetTyrSerLeuSerV 286813 : TTGTGTTATTACCATACTGTAATGGCAATAATTGCATTCGTCATGTACTCGTTGTCAG : 286870 296 : leLeuMetGluTrpGluAsnThrAsnThrMetAlaIleValIleTyrIleThrIleGl : 314 !!!!! !|||||||||.!.!:!.!.|||!!:!.!! :!!! ||| !|||:!:! alPhe***GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLe 286871 : TTTTCTAGGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCT : 286927 315 : nIleSerIleIlePheCysValPheIleLeuCysTyrIleGlyGlnMetLeuValAsp : 333 !:!!|||.!!! ||| !||||||||||||||||||||||||:!!!!:||| !!!: uValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGlu 286928 : GGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAA : 286984 334 : Glu >>>> Target Intron 1 >>>> AsnTyrIleValSerGlnAlaSerSe : 343 ::: 74 bp !! ! !|||.!! !:!!!!!! Gln++ ++CysLeuLysValGlyLeuSerThrTy 286985 : Caggt.........................agtGCTTAAAAGTCGGCTTGTCAACTTA : 287088 344 : rThrValAsnTrpTyrArgLeuSerIleLysAsnMetArgCysLeuIleLeuIleIle : 362 !! !:!!:!!|||||||||||| !! !|||!.. !:! !!||||||||||||.!! rMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePhe 287089 : CATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTC : 287145 363 : AlaMetSerAsnHisProMetLysLeuLysAlaAlaLysMetMetGluMetSerLeuI : 382 |||:!!|||||| ! !!!!:||||||! !|||!.!|||!!:!!:!!::!:||||||! AlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuS 287146 : GCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAA : 287205 383 : leThrPheThrAspIleMetLysValSerMetGlyTyrLeuAsnIle : 397 !!:!||| !..!:!:! ! :!!!:!:!:..!|||! !:!!:!: erSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 287206 : GCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 287252 vulgar: AfOr17 275 397 . KQ414889.1 286812 287252 + 189 M 59 177 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286813 287252 189 + . gene_id 12 ; sequence AfOr17 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286813 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286813 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286813 287252 189 + . alignment_id 12 ; Query AfOr17 ; Align 286813 276 177 ; Align 287064 335 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr17 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 184 Query range: 275 -> 397 Target range: 280025 -> 280465 276 : IleCysLeuIleGluMetIleGlySerThrCysMetIleCysLeuValGlyTyrCysI : 295 :!!|||! !.!!.!.!!::!! !:!!! ! ! .!! !:!! !..!! ! : LeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerLeuSerV 280026 : TTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGTTGTCAG : 280083 296 : leLeuMetGluTrpGluAsnThrAsnThrMetAlaIleValIleTyrIleThrIleGl : 314 !!!!! !|||||||||.!.!.!:!!.!!!!:!.!! !!! |||:!!! !.!!! alPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLe 280084 : TTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCT : 280140 315 : nIleSerIleIlePheCysValPheIleLeuCysTyrIleGlyGlnMetLeuValAsp : 333 ||||||:!!! ||| !||||||||||||||||||||||||:!!!!:||| !!!: uIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGlu 280141 : CATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAA : 280197 334 : Glu >>>> Target Intron 1 >>>> AsnTyrIleValSerGlnAlaSerSe : 343 ::: 74 bp !! ! !|||.!! !:!!!!!! Gln++ ++CysLeuLysValGlyValSerThrTy 280198 : Caggt.........................agTGCTTAAAAGTCGGCGTGTCAACTTA : 280301 344 : rThrValAsnTrpTyrArgLeuSerIleLysAsnMetArgCysLeuIleLeuIleIle : 362 !! !:!!:!!|||||||||||| !! |||!!. !:! !!||||||||||||.!! rMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePhe 280302 : CATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTC : 280358 363 : AlaMetSerAsnHisProMetLysLeuLysAlaAlaLysMetMetGluMetSerLeuI : 382 |||:!!|||||| ! !!!!:||||||! !|||!.!|||!!:!!:!!::!:||||||! AlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuS 280359 : GCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAA : 280418 383 : leThrPheThrAspIleMetLysValSerMetGlyTyrLeuAsnIle : 397 !!:!||| !..!:!:! ! :!!!:!:!:..!|||! !:!!:!: erSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280419 : GCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: AfOr17 275 397 . KQ414889.1 280025 280465 + 184 M 59 177 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280026 280465 184 + . gene_id 13 ; sequence AfOr17 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280026 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280026 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280026 280465 184 + . alignment_id 13 ; Query AfOr17 ; Align 280026 276 177 ; Align 280277 335 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr17 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 263 -> 363 Target range: 260779 -> 262012 264 : GluPheLeuLysAsnIleGluThrIleThrGluTyrIleCysLeuIleGluMetIleG : 283 ...|||:!!..!..!|||||| !:!:! !.!. ||||||!!!:!:|||:!!.!! SerPheIleSerArgIleGluAspValMetAsnArgIleCysPheLeuGluLeuPheA 260780 : AGCTTCATATCGCGTATCGAGGATGTGATGAACCGGATATGCTTCCTGGAGTTGTTCA : 260837 284 : lySerThrCysMetIleCysLeuValGlyTyrCysIleLeuMet >>>> Target : 298 !!!!!||| |||||||||:!!||||||! !||||||||| 85 rgCysThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeuMet++ 260838 : GGTGCACTCTGGATATATGTCTACTTGGCTACTATATTCTTATGgt............ : 260884 299 : Intron 1 >>>> GluTrpGluAsnThrAsnThrMetAlaIleValIleTyrIleT : 312 2 bp ||||||! .!. !:!!! !... !:!: !! |||.!!! ++GluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheM 260885 : .............agGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCA : 261776 313 : hrIleGlnIleSerIleIlePheCysValPheIleLeuCysTyrIleGlyGlnMetLe : 331 !!!:! !|||:!!||| !||| !|||||||||:!!||||||||||||:!!!!:|| etMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLe 261777 : TGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACT : 261833 332 : uValAspGlu >>>> Target Intron 2 >>>> AsnTyrIleValSerGlnA : 341 |..!!!::!! 81 bp !! ! !|||.!!.!.! uThrGluGln++ ++CysSerLysValGlyAspV 261834 : AACGGAACAGgt.........................agTGCTCGAAAGTTGGTGACG : 261944 342 : laSerSerThrValAsnTrpTyrArgLeuSerIleLysAsnMetArgCysLeuIleLe : 360 .! !! !! !..!||||||||| !||| !! !|||!:!!!:! ! !|||||||| alValTyrMetThrAsnTrpTyrTyrLeuProAspLysSerIleLeuAspLeuIleLe 261945 : TTGTTTACATGACAAACTGGTATTATTTACCTGATAAAAGTATCCTTGATTTGATTTT : 262001 361 : uIleIleAla : 363 |||||||||| uIleIleAla 262002 : GATCATTGCA : 262012 vulgar: AfOr17 263 363 . KQ414889.1 260779 262012 + 175 M 34 102 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 260780 262012 175 + . gene_id 14 ; sequence AfOr17 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 260780 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260780 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262012 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262012 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 260780 262012 175 + . alignment_id 14 ; Query AfOr17 ; Align 260780 264 102 ; Align 261734 298 111 ; Align 261926 335 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr17 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 169 Query range: 297 -> 396 Target range: 228247 -> 230433 298 : GluTrpGluAsnThrAsnThrMetAlaIleValIleTyrIleThrIleGlnIleSerI : 317 ||||||.!. ! !.!. !! ! !|||! !||| !.!!:!!! :!!|||. GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerP 228248 : GAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCT : 228305 318 : leIlePheCysValPheIleLeuCysTyrIleGlyGlnMetLeuValAspGlu >>> : 335 !!! ||| :::||||||...||||||||||||:!!!!::!!!.!!!:.!. heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluHis++ 228306 : TTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACgt... : 228361 336 : > Target Intron 1 >>>> AsnTyrIleValSerGlnAlaSerSerThrValA : 346 1889 bp ! ! !|||.!!:!! !|||! !! !:!!. ++CysArgLysValGlyGluLysSerTyrMetIleG 228362 : ......................agTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCG : 230281 347 : snTrpTyrArgLeuSerIleLysAsnMetArgCysLeuIleLeuIleIleAlaMetSe : 365 !.||||||||||||!!! !!!.!!.! !! !|||! !|||||||||||||||||||| luTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 230282 : AATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTC : 230338 366 : rAsnHisProMetLysLeuLysAlaAlaLysMetMetGluMetSerLeuIleThrPhe : 384 |||| ! !!! !|||!!!! !|||!.!!!.|||:!:|||:!:|||:!!! !|||||| rAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnThrPhe 230339 : CAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACACTTTC : 230395 385 : ThrAspIleMetLysValSerMetGlyTyrLeuAsn : 396 !:!|||:!!! ! :!!! ! ! !||| !||| SerAspValSerIleIlePheSerValTyrThrAsn 230396 : AGCGACGTAAGTATCATATTCTCTGTTTACACGAAT : 230433 vulgar: AfOr17 297 396 . KQ414889.1 228247 230433 + 169 M 37 111 5 0 2 I 0 1885 3 0 2 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228248 230433 169 + . gene_id 15 ; sequence AfOr17 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228248 230433 169 + . alignment_id 15 ; Query AfOr17 ; Align 228248 298 111 ; Align 230248 335 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr17 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 318 -> 387 Target range: 200176 -> 200452 319 : PheCysValPheIleLeuCysTyrIleGlyGlnMetLeuValAspGlu >>>> Tar : 335 ||||||:!!||||||||||||! !|||||||||:!:|||:!!|||||| PheCysIlePheIleLeuCysCysIleGlyGlnLeuLeuIleAspGlu++ 200177 : TTCTGCATTTTCATACTATGTTGCATCGGTCAACTTCTTATCGATGAAgt........ : 200227 336 : get Intron 1 >>>> AsnTyrIleValSerGlnAlaSerSerThrValAsnTrp : 347 68 bp ||||||:!:|||.!! !.!!|||!!!|||||||||||| ++AsnTyrValValGlyLeuThrSerCysThrValAsnTrp 200228 : .................agAATTACGTGGTTGGATTAACATCTTGCACGGTGAATTGG : 200329 348 : TyrArgLeuSerIleLysAsnMetArgCysLeuIle-LeuIleIleAlaMetSerAsn : 366 ! !|||! ! !!! !!:!:!!:!!|||! !|||! !#||||||||||||||||||||| CysArgProProAsnArgHisValArgTyrLeuThr#LeuIleIleAlaMetSerAsn 200330 : TGTCGTCCTCCAAACAGACATGTGCGCTATCTGACCGCTGATAATTGCCATGTCTAAT : 200387 367 : HisProMetLysLeuLysAlaAlaLysMetMetGluMetSerLeuIleThrPheThrA : 386 :!!! !!!:!:!||| !::!::!|||:!!:!:|||!!:!:!||| !|||||||||| TyrLeuIleArgLeuAlaSerSerLysValValGluIleAsnLeuAlaThrPheThrA 200388 : TACCTAATAAGATTAGCAAGTAGTAAAGTGGTCGAAATAAATTTAGCTACTTTCACAG : 200447 387 : spIle : 387 ||:!! spVal 200448 : ATGTA : 200452 vulgar: AfOr17 318 387 . KQ414889.1 200176 200452 + 165 M 16 48 5 0 2 I 0 64 3 0 2 M 25 75 F 0 1 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 200177 200452 165 + . gene_id 16 ; sequence AfOr17 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 200177 200224 . + . KQ414889.1 exonerate:protein2genome:local exon 200177 200224 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 200225 200226 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 200225 200292 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 200291 200292 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 200293 200452 . + . KQ414889.1 exonerate:protein2genome:local exon 200293 200452 . + . insertions 0 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local similarity 200177 200452 165 + . alignment_id 16 ; Query AfOr17 ; Align 200177 319 48 ; Align 200293 335 75 ; Align 200369 360 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr17 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 163 Query range: 290 -> 401 Target range: 258243 -> 258735 291 : ValGlyTyrCysIleLeuMetGluTrpGluAsnThrAsnThrMetAlaIleValIleT : 310 ||| ::: ......||||||...!.. ::: ... ::: | ValIlePheTyrTyrPheGlnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerT 258244 : gttattttttattattttcaggaATGGTCTACGCaagatattcaaaatttgagttcgt : 258301 311 : yrIleThrIleGlnIleSerIleIlePheCysValPheIleLeuCysTyrIleGlyGl : 329 ||.!!! !|||! ||||||::: ||| :::|||::::::||||||||||||:! yrPheMetIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGl 258302 : aCTTTATGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGA : 258358 330 : nMetLeuValAspGlu >>>> Target Intron 1 >>>> AsnTyrIleValS : 339 !!!:|||..!!!::!! 90 bp ! ! ! !|||. uIleLeuThrGluGln++ ++CysLysLysValG 258359 : AATATTAACAGAACAGgt.........................agTGCAAGAAAGTTG : 258478 340 : erGlnAlaSerSerThrValAsnTrpTyrArgLeuSerIleLysAsnMetArgCysLe : 358 !!.!.!.! !! !! !..!:!!|||||| !||| !! !|||!..!!:! ! !|| lyAspValValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLe 258479 : GCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTT : 258535 359 : uIleLeuIleIleAlaMetSerAsnHisProMetLysLeuLysAlaAlaLysMetMet : 377 |||||||:!!|||||| |||!:! !:!::!!:!!! |||...|||...... uIleLeuValIleAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePhe 258536 : AATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattcttt : 258592 378 : GluMetSerLeuIleThrPheThrAsp >>>> Target Intron 2 >>>> Il : 387 ...||||||:!! !||||||!:!||| 69 bp :! HisMetSerIleTyrThrPheSerAsp++ ++Va 258593 : cacatGTCCATTTACACATTCAGCGATgt.........................agGT : 258691 388 : eMetLysValSerMetGlyTyrLeuAsnIleLeuArgGluIle : 401 !!!:|||..!|||.!.!.!|||||||||:!!||||||:!!:!! lIleLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnVal 258692 : AATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGTA : 258735 vulgar: AfOr17 290 401 . KQ414889.1 258243 258735 + 163 M 44 132 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258244 258735 163 + . gene_id 17 ; sequence AfOr17 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 258244 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258244 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258735 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258735 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258244 258735 163 + . alignment_id 17 ; Query AfOr17 ; Align 258244 291 132 ; Align 258466 335 156 ; Align 258691 387 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr17 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 337 -> 387 Target range: 224508 -> 224658 338 : ValSerGlnAlaSerSerThrValAsnTrpTyrArgLeuSerIleLysAsnMetArgC : 357 :::...|||!.!|||! !! !:!!:!!||||||||||||!!! !!!.!!.! ! !| IleGlyGlnValSerTyrMetIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuC 224509 : attggacaAGTGTCGTACATGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTAT : 224566 358 : ysLeuIleLeuIleIleAlaMetSerAsnHisProMetLysLeuLysAlaAlaLysMe : 376 ||! !|||||||||||||||||||||||| ! !!!!:||||||! !|||!.!!!.|| ysCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMe 224567 : GCTGCATTCTGATAATCGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACAT : 224623 377 : tMetGluMetSerLeuIleThrPheThrAspIle : 387 |:!:|||:!!!!!|||! !|||||| !|||:!! tValGluLeuCysLeuThrThrPheGlyAspVal 224624 : GGTCGAACTGTGTCTAACCACTTTCGGTGACGTA : 224658 vulgar: AfOr17 337 387 . KQ414889.1 224508 224658 + 121 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224509 224658 121 + . gene_id 18 ; sequence AfOr17 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224509 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224509 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224509 224658 121 + . alignment_id 18 ; Query AfOr17 ; Align 224509 338 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr17 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 272 -> 348 Target range: 301611 -> 301839 273 : ThrGluTyrIleCysLeuIleGluMetIleGlySerThrCysMetIleCysLeuValG : 292 ||| :!!:!!||| ::: ... ||||||! ! ! !!!:!! ThrPheHisLeuCysAlaValIleLysPheGluSerThrLeuAsnAlaLysPheLeuA 301612 : ACTTTTCATCTCTGCgctgtaattaaatttgaatctACTTTAAATGCAAAGTTTTTAC : 301669 293 : lyTyrCysIleLeuMetGluTrpGluAsnThrAsnThrMetAlaIleValIleTyrIl : 311 !! ! !!!! !||||||:!!|||!:!:!!|||!!:|||!!::!!! !!:!.! rgValIle***Phe***GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePh 301670 : GAGTAATTTGATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTT : 301726 312 : eThrIleGlnIleSerIleIlePheCysValPheIleLeuCysTyrIleGlyGlnMet : 330 !|||:!: !! |||.!!! !||| !:!!||||||!!!||||||||||||:!!!!: eThrLeuLeuThrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIle 301727 : CACTCTGTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATT : 301783 331 : LeuValAspGluAsnTyrIleValSerGlnAlaSerSerThrValAsnTrpTyr : 348 ||| !!!::!! !! ! !|||::!::: ::: !||| LeuSerGluGlnValLeuThrTyrSerArgSerPheHisPhePheSerMetTyr 301784 : CTTTCCGAACAGGTACTTACTTACAGTAGAagtttccatttcttttcaatGTAT : 301839 vulgar: AfOr17 272 348 . KQ414889.1 301611 301839 + 101 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301612 301839 101 + . gene_id 19 ; sequence AfOr17 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301612 301839 . + . KQ414889.1 exonerate:protein2genome:local exon 301612 301839 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301612 301839 101 + . alignment_id 19 ; Query AfOr17 ; Align 301612 273 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr6/7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 540 Query range: 5 -> 258 Target range: 204218 -> 204980 6 : ValGluLysAspLeuLysGlnAlaPhe<->TyrAlaGlnProPheLeuLysIleIleG : 24 !.!|||:!!||||||!:! ! ||| !:!!.!:!!|||.!!||| !|||:!!| AlaGluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValG 204219 : GCAGAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCG : 204276 25 : lyAlaTrpProAsnAlaIleLysSerProLeuSerSerLysIleGlnLysTrpPheIl : 43 |||||||||||! ! !!:!:!!.||| !!! !! !!!!!:!:!! !::! ! .!. lyAlaTrpProIleProValAsnSerSerProPheThrArgLeuValArgArgIleGl 204277 : GTGCGTGGCCGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGA : 204333 44 : eIleSerPhePheLeuCysLeuGlnIleCysIleValThrProCysIlePheGluAla : 62 ! ! ! !! ! ||| ... :!::!!..!||| !!:!!!!. ! !.! uHisValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrVal 204334 : ACACGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTG : 204390 63 : LeuLeuLysGluLysAsnAlaLysArgLysIleHisLeuPheMetLeuAlaThrAsnT : 82 !!!|||||||||||||||!.!|||! !::::!: ! :!!.!! !! ! !..!||| PheLeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnC 204391 : TTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACT : 204450 83 : hrValAsnGlnValPheLysTyrValIleThrLeuAsnArgSerSerGluLeuLysIl : 101 ! !! ||| !!||||||||| !:!!! !||| !!|||! !..!:!!:!!:!!! ysSerIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLy 204451 : GCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAA : 204507 102 : eAlaIleArgGluMetLysAsnAspTrpLeuAsnAlaThrProGluAsnArgTyrIle : 120 ::!:!:!.! !!:!:!..!||||||:!!.!.|||||| !|||||||||! ||| sSerLeuAsnThrIleArgArgAspTrpIleGluAlaThrAspGluAsnArgLeuIle 204508 : GAGTTTGAACACCATCAGACGCGACTGGATAGAGGCTACGGATGAAAATCGGTTGATT : 204564 121 : PheIleThrAsnSerLysIleGlyGlnArgIleMetLeuIleIleValValThrMetT : 140 ||| !:!!!!.:!!|||||||||!:!|||:!::!!|||||| !!.!!.!||||||| PheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetT 204565 : TTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGT : 204624 141 : yrAlaSerGlyLeuGlyTyrArgMetValLeuProLeuLeuLysGlyLysIleIleLe : 159 ||!.!.!!|||||| !!||||||! !:!!||||||||||||!:!|||! !|||:!! yrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleValTh 204625 : ACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTAAC : 204681 160 : uProAsnAsnValThrIleArgLeuLeuProCysProThrTyrPheThrPhePheAsn : 178 !|||:!!|||||||||||||||! !||||||||||||..!||||||...||||||||| rProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePheAsn 204682 : ACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaac : 204738 179 : GluLeuValSerProTyrTyrGluMetIlePheIleLeuGlnLeuLeuAlaGlyCysP : 198 |||! ! !|||||| !!||||||!!::!!||||||||||||:!!:!!||||||! ! GluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheV 204739 : GAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTG : 204798 199 : heIleTyrThrValLeuSerGlyThrIleGlyIleSerLeuMetLeuSerLeuHisMe : 217 !!! !|||.!!|||:!!||||||||| !|||!!:!!! !:!!!!! !|||||| alThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAl 204799 : TTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGC : 204855 218 : tCysSerLeuLeuLysIleLeuSerLysLysLeuValAspLeuAlaAspGlySerIle : 236 !||||||:!!|||!:!|||||| !!!.|||:!! !! |||!.!||| !:!! ! aCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAlaAsp 204856 : GTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCGGAC : 204912 237 : ThrAsnGluAsnIleMetGlnGluLysPheValAspIleValGluTyrGlnThrLysI : 256 ! !!.!|||!..:!!:!!!!...!|||.!!!.!||||||||||||||||||||||||| MetThrGluThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrLysI 204913 : ATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGAAGA : 204972 257 : leLysArg : 258 |||||||| leLysArg 204973 : TAAAGAGG : 204980 vulgar: AfOr6/7 5 258 . KQ414889.1 204218 204980 + 540 M 9 27 G 0 3 M 244 732 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204219 204980 540 + . gene_id 1 ; sequence AfOr6/7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204219 204980 . + . KQ414889.1 exonerate:protein2genome:local exon 204219 204980 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 204219 204980 540 + . alignment_id 1 ; Query AfOr6/7 ; Align 204219 6 27 ; Align 204249 15 732 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr6/7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 282 Query range: 291 -> 395 Target range: 206050 -> 207604 292 : GluLeuGluAsnHisAsnIleValAlaIleValValHisPheMetLeuLeuGlyThrC : 311 |||! !||||||:!!|||! !..!|||:!!:!!|||:!!.!!! !|||! ! !:!!| GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 312 : ysIlePheValThrTyrIleValCysTyrIleGlyGlnLeuLeuLeuAspGlu >>> : 329 ||! !||| !..!!:!|||:!!|||||||||||||||||||||:!!|||:!! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 330 : > Target Intron 1 >>>> SerAsnAsnLeuAlaLysThrCysIleThrLeuA : 340 81 bp !:!:!! !:!!!.! !|||! ! !|||:!!| ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 341 : snTrpTyrHisPheProAlaArgLysAlaArgPheLeuIleLeuMetIleIleMetSe : 359 ||||||||!.!.!!||| !||| ! ||||||! !:!!||||||!!:||| !||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 360 : rAsnTyrProValLysLeuThrAlaAlaLysValValAspValSerLeuThrThrPhe : 378 ||||||||||:!!||||||||||||!.!|||:!! !!!!::!!||||||.!!!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 379 : ThrAsp >>>> Target Intron 2 >>>> IleMetLysAlaAlaMetGlyTy : 388 |||||| 1161 bp :!!||||||!.!||||||||||| ThrAsp++ ++ValMetLysValAlaMetGlyTy 206391 : ACCGATgt.........................agGTAATGAAGGTGGCGATGGGATA : 207581 389 : rLeuAsnMetLeuArgGluVal : 395 |!!!|||!!:|||||||||||| rPheAsnIleLeuArgGluVal 207582 : CTTCAACATACTCCGTGAAGTC : 207604 vulgar: AfOr6/7 291 395 . KQ414889.1 206050 207604 + 282 M 37 111 5 0 2 I 0 77 3 0 2 M 52 156 5 0 2 I 0 1157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 207604 282 + . gene_id 2 ; sequence AfOr6/7 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206398 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206398 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206399 206400 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206399 207559 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 207558 207559 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 207560 207604 . + . KQ414889.1 exonerate:protein2genome:local exon 207560 207604 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 207604 282 + . alignment_id 2 ; Query AfOr6/7 ; Align 206051 292 111 ; Align 206243 329 156 ; Align 207560 381 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr6/7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 228 Query range: 19 -> 256 Target range: 208239 -> 208956 20 : LeuLysIleIleGlyAlaTrpProAsnAlaIleLysSerProLeuSerSerLysIleG : 39 |||||||||||||||:!!||||||!..:!!||| ! !! !!! !! !..!!!.! !| LeuLysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerG 208240 : TTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCC : 208297 40 : lnLysTrpPheIleIleSerPhePheLeuCysLeuGlnIleCysIleValThrProCy : 58 || ! .!!:!!! ! !.!! !! !||||||! !! !||||||! !||| lnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProTh 208298 : AGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGAC : 208354 59 : sIlePheGluAlaLeuLeuLysGluLysAsnAlaLysArgLysIleHisLeuPheMet : 77 ! !.!. |||:!!||| !! :!!:!! ! ! !:!!:!! ! :!!! !! rGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSer 208355 : CGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGC : 208411 78 : LeuAlaThrAsnThrValAsnGlnValPheLysTyrValIleThrLeuAsnArgSerS : 97 ! !!:! ! !:!!! ! !! ||||||||||||! ! ! !|||..!. AlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluG 208412 : GCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGG : 208471 98 : erGluLeuLysIleAlaIleArgGluMetLysAsnAspTrpLeuAsnAlaThr<->Pr : 115 !!!!::!!::!! ..!:!!..! ! :!::!! !|||||| !|||!.! ! lyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGl 208472 : GTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGA : 208528 116 : oGluAsnArgTyrIlePheIleThrAsnSerLysIleGlyGlnArgIleMetLeuIle : 134 !|||:!!||| ! |||.!.:!: !|||:!!!...!!!.!::!!:!:!:!!::!!||| uGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIle 208529 : GGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATA : 208585 135 : IleValValThrMetTyrAlaSerGlyLeuGlyTyrArgMetValLeuProLeuLeuL : 154 !! !!.! !||||||!.!.!. ::: ||| :!:!.!||||||||| !: CysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrA 208586 : TGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTC : 208645 155 : ysGlyLysIleIleLeuPro<->AsnAsnValThrIleArgLeuLeuProCysProTh : 172 :!! !|||:!!:!! ! ! ..!|||:!!||| !||| !||| !! !|||.. rgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProVa 208646 : GAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGT : 208702 173 : rTyrPheThrPhePheAsnGluLeuValSerProTyrTyrGluMetIlePheIleLeu : 191 ! ! !.!!.!.:!!! ! ! !|||||| !!|||!!:.!!!:!! :!! lProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrVal 208703 : TCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTA : 208759 192 : GlnLeuLeuAlaGlyCysPheIleTyrThrValLeuSerGlyThrIleGlyIleSerL : 211 |||||||||:!!|||! ! !! !:!!!.!:!! ! !|||.!! !|||:!::!! GlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaA 208760 : CAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCG : 208819 212 : euMetLeuSerLeuHisMetCysSerLeuLeuLysIleLeuSerLysLysLeuValAs : 230 !:!!|||:!!:!!||| !|||.!!! !|||:!!||||||! !... !:!!! ! ! laLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLy 208820 : CGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAA : 208876 231 : pLeuAlaAspGlySerIleThrAsnGluAsnIleMetGlnGluLysPheValAspIle : 249 |||!.!|||||| !! !.!.|||!!.! !:!!.!.:!!!:!!!.!.!:!!||| sLeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIle 208877 : GTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATC : 208933 250 : ValGluTyrGlnThrLysIle : 256 |||||| ! !!...!::!:!: ValGluGlnHisValArgVal 208934 : GTGGAGCAGCATGTTCGAGTG : 208956 vulgar: AfOr6/7 19 256 . KQ414889.1 208239 208956 + 228 M 95 285 G 0 3 M 46 138 G 0 3 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208240 208956 228 + . gene_id 3 ; sequence AfOr6/7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208240 208956 . + . KQ414889.1 exonerate:protein2genome:local exon 208240 208956 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208240 208956 228 + . alignment_id 3 ; Query AfOr6/7 ; Align 208240 20 285 ; Align 208528 115 138 ; Align 208669 161 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr6/7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 217 Query range: 18 -> 256 Target range: 217198 -> 217918 19 : PheLeuLysIleIleGlyAlaTrpProAsnAlaIleLysSerProLeuSerSerLysI : 38 !!.|||||| !!:||| !|||||||||:!! !! !!! !! !||| !!|||| LeuLeuLysProMetGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysI 217199 : TTGTTGAAACCGATGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAA : 217256 39 : leGlnLysTrpPheIleIleSerPhePheLeuCysLeuGlnIleCysIleValThrPr : 57 ||! ! .!.|||! !:!!!!.! !! ! !!||| !! !! !:!! !!..!|| leLeuTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValPr 217257 : TCCTCTACAAACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACC : 217313 58 : oCysIlePheGluAlaLeuLeuLysGluLysAsnAlaLysArgLysIleHisLeuPhe : 76 |||| !.!. ! !.!!!!|||:!!! :!!:!! ! ! !|||:!: ! |||||| oCysSerMetTyrValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPhe 217314 : GTGCTCCATGTACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTC : 217370 77 : MetLeuAlaThrAsnThrValAsnGlnValPheLysTyrValIleThrLeuAsnArgS : 96 ! ! !! ! ! !|||! ! !! !!|||||| ! ! !:!! !!.!! GlyProLeuIlePheCysValMetAlaPheValLysTyrTyrSerLeuIleValHisL 217371 : GGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACA : 217430 97 : erSerGluLeuLysIleAlaIleArgGluMetLysAsnAspTrpLeuAsnAlaThrPr : 115 .!:!!!!::!!::: ..!:!:|||..!!!::!!...|||||| !|||!.!! ! ysAlaAspIleArgGluCysValArgArgIleGluArgAspTrpArgAsnValArgCy 217431 : AGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATG : 217487 116 : oGlu<->AsnArgTyrIlePheIleThrAsnSerLysIleGlyGlnArgIleMetLeu : 133 !||| :!!||| ! .!.|||..!|||:!!!!..!!|||!::!:!:!::!:||| sGluLysAspArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeu 217488 : CGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTA : 217544 134 : IleIleValValThrMetTyrAlaSerGlyLeuGlyTyrArgMetValLeuProLeuL : 153 :!! !..! !! !||||||::!... ::: ||| :::!.!:!!|||:!! LeuCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleS 217545 : CTCTGTACCTTCTTCATGTACAGCggtttcgttttttattacatCGCTATACCGATCA : 217604 154 : euLysGlyLysIleIleLeuProAsn<->AsnValThrIleArgLeuLeuProCysPr : 171 ! !|||!:!|||:!!! ! !||| |||:!!|||.!!! !! !||| !! !|| erValGlyArgIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPhePr 217605 : GCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCC : 217661 172 : oThrTyrPheThrPhePheAsnGluLeuValSerProTyrTyrGluMetIlePheIle : 190 | ! !.!!.!!:!! ! ! !!!!||| !!|||!!::!:|||.!! oPheThrLysTyrIleIleAspThrArgTyrThrProThrAsnGluIleValPhePhe 217662 : TTTTACGAAGTATATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTC : 217718 191 : LeuGlnLeuLeuAlaGlyCysPheIleTyrThrValLeuSerGlyThrIleGlyIleS : 210 |||||||||:!!||||||..!!!.!!::!! !:!! !|||!.!.!! !.!!:!:: LeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuA 217719 : CTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGG : 217778 211 : erLeuMetLeuSerLeuHisMetCysSerLeuLeuLysIleLeuSerLysLysLeuVa : 229 !! ! !!!:!!:!!||| |||.!!! !:!!:!!:!:|||! !!!. !||| laAlaAlaPheAlaValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGl 217779 : CGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCA : 217835 230 : lAspLeuAlaAspGlySerIleThrAsnGluAsnIleMetGlnGluLysPheValAsp : 248 ! !!||| !||||||!!! !! ...:!!! !:!!.!.! !:!.!!!.!..! nHisLeuIleAspGlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSer 217836 : ACATTTAATCGACGGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGC : 217892 249 : IleValGluTyrGlnThrLysIle : 256 ||||||... ! !!...!::!||| IleValSerGlnHisValArgIle 217893 : ATCGTCAGTCAACACGTTCGGATA : 217918 vulgar: AfOr6/7 18 256 . KQ414889.1 217198 217918 + 217 M 98 294 G 0 3 M 45 135 G 0 3 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217199 217918 217 + . gene_id 4 ; sequence AfOr6/7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217199 217918 . + . KQ414889.1 exonerate:protein2genome:local exon 217199 217918 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217199 217918 217 + . alignment_id 4 ; Query AfOr6/7 ; Align 217199 19 294 ; Align 217496 117 135 ; Align 217634 162 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr6/7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 215 Query range: 18 -> 260 Target range: 221402 -> 222134 19 : PheLeuLysIleIleGlyAlaTrpProAsnAlaIleLysSerProLeuSerSerLysI : 38 .!!|||||| ||||||!.!|||||||||:!! !!!.! ! !! ! !..!!:! IleLeuLysProIleGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgT 221403 : ATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGAT : 221460 39 : leGlnLysTrpPheIleIleSerPhePheLeuCysLeuGlnIleCysIleValThrPr : 57 !! ! |||.!.|||! ! ! !!! !! ! !!||| ! ! !:!!:!!..!|| yrLeuTyrTrpLeuIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValPr 221461 : ACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACC : 221517 58 : oCysIlePheGluAlaLeuLeuLysGluLysAsnAlaLysArgLysIleHisLeuPhe : 76 ||||! !.!! ! !.!:!!|||:!!! !:!!:!!!.! ! !.!!:!||| ! |||!!. oCysSerLeuTyrValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeu 221518 : TTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTG : 221574 77 : MetLeuAlaThrAsnThrValAsnGlnValPheLysTyrValIleThrLeuAsnArgS : 96 ! ! !!:! ! !|||! ! !!.!.|||||| !:!: !:!! ! !. GlyProLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrG 221575 : GGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACG : 221634 97 : erSerGluLeuLysIleAlaIleArgGluMetLysAsnAspTrpLeuAsnAlaThr<- : 115 .!!:!!!::!!::: ..!|||..!...!!::!! |||||| !||| !||| luAsnAspIleArgGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTy 221635 : AGAACGACATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTA : 221691 116 : >ProGluAsnArgTyrIlePheIleThrAsnSerLysIleGlyGlnArgIleMetLeu : 133 !!:!!:!!!:! !!|||.!.||| !|||:!!! .!!|||::!|||:!:!!::!! rSerLysAspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMet 221692 : CTCCAAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATG : 221748 134 : IleIleValValThrMetTyrAlaSerGlyLeuGlyTyrArgMetValLeuProLeuL : 153 ||| !..! !! !||||||::!... ::: ||| :::!.!:!!|||!!! IleCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheS 221749 : ATCTGCACATTTTTCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTA : 221808 154 : euLysGlyLysIleIleLeuProAsn<->AsnValThrIleArgLeuLeuProCysPr : 171 ! !||||||||| ! !! !:!! |||||||||... ! !:!! !! !|| erValGlyLysIleProAlaGlnAspValAsnValThrPheIleProMetValPhePr 221809 : GCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCC : 221865 172 : oThrTyrPheThrPhePheAsnGluLeuValSerProTyrTyrGluMetIlePheIle : 190 | !! !.!! !!:!! ! ! !|||||| !!|||!!::!:||| oPheSerArgPheIleValAspThrArgTyrSerProValAsnGluIleLeuPheSer 221866 : TTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCG : 221922 191 : LeuGlnLeuLeuAlaGlyCysPheIleTyrThrValLeuSerGlyThrIleGlyIleS : 210 ||||||:!!:!!||||||..!!!.!!::!!!:!:!! !|||!.!.!! !.!!:!: LeuGlnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuV 221923 : CTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGG : 221982 211 : erLeuMetLeuSerLeuHisMetCysSerLeuLeuLysIleLeuSerLysLysLeuVa : 229 ! !|||!!!:!!:!!||| |||.!!! !:!!:!!:!:|||! !!.. !||| alAlaMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLy 221983 : TTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAA : 222039 230 : lAspLeuAlaAspGlySerIleThrAsnGluAsnIleMetGlnGluLysPheValAsp : 248 ! !!||| !:!!||| !! !! |||! !:!!.!...!!:!.!.!.! ! sHisLeuIleAsnGlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLys 222040 : ACATTTGATCAACGGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAG : 222096 249 : IleValGluTyrGlnThrLysIleLysArgPheLeu : 260 ||||||.!. ! !!...!::!||| !!:!!:!:!! IleValAsnGlnHisValArgIleLeuGlnTyrVal 222097 : ATTGTGAATCAACACGTTCGAATATTGCAGTATGTA : 222134 vulgar: AfOr6/7 18 260 . KQ414889.1 221402 222134 + 215 M 96 288 G 0 3 M 47 141 G 0 3 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221403 222134 215 + . gene_id 5 ; sequence AfOr6/7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221403 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221403 222134 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221403 222134 215 + . alignment_id 5 ; Query AfOr6/7 ; Align 221403 19 288 ; Align 221694 115 141 ; Align 221838 162 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr6/7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 194 Query range: 291 -> 381 Target range: 305100 -> 305783 292 : GluLeuGluAsnHisAsnIleValAlaIleValValHisPheMetLeuLeuGlyThrC : 311 !!:! !|||!:! !|||! !|||::!:!!..!..!:!! :!!|||||| !:!! AspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValLeuLeuIleSerV 305101 : GATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGTTACTGATATCTG : 305158 312 : ysIlePheValThrTyrIleValCysTyrIleGlyGlnLeuLeuLeuAspGlu >>> : 329 ! !||| !! !!:!|||:!!||||||||||||:!!:!!|||:!!!!::!! alThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMetGluLys++ 305159 : TAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTATGGAAAAGgt... : 305214 330 : > Target Intron 1 >>>> SerAsnAsnLeuAlaLysThrCysIleThrLeuA : 340 413 bp |||!:!!:!:!!!.! !:!!|||.!!! !:!!! ++SerSerSerValGlyLeuSerCysPheMetIleS 305215 : ......................agAGCAGTAGCGTTGGATTATCCTGTTTTATGATCA : 305658 341 : snTrpTyrHisPheProAlaArgLysAlaArgPheLeuIleLeuMetIleIleMetSe : 359 :!|||||||||!!.|||.!!!:!! ! !!.! !|||||||||!!:||| !||||| erTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleLeuIleIleAlaMetSe 305659 : GTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTTTAATCATTGCCATGTC : 305715 360 : rAsnTyrProValLysLeuThrAlaAlaLysValValAspValSerLeuThrThrPhe : 378 |!:! !!|||!.!|||:!!!:!|||!.!||||||||||||:!!||||||:!!|||||| rSerAsnProAlaLysIleSerAlaGlyLysValValAspLeuSerLeuSerThrPhe 305716 : AAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTATCTTTATCCACATTT : 305772 379 : ThrAspIle : 381 !:!!:!: GlyAsnVal 305773 : GGAAACGTG : 305783 vulgar: AfOr6/7 291 381 . KQ414889.1 305100 305783 + 194 M 37 111 5 0 2 I 0 409 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305101 305783 194 + . gene_id 6 ; sequence AfOr6/7 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305101 305783 194 + . alignment_id 6 ; Query AfOr6/7 ; Align 305101 292 111 ; Align 305625 329 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr6/7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 188 Query range: 255 -> 391 Target range: 286690 -> 287252 256 : IleLysArgPheLeuAsnAsnThrGluLeuIleThrGlnTyrPheCysPheTyrAspI : 275 ||| !!!|||:!!:::.!.! !||| !:!! !.!. ! .!.|||||| !!!:: IlePheSerPheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluV 286691 : ATTTTCAGTTTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGG : 286748 276 : leSerPheAsnThrCysLeuIleCysPheValGlyTyrCysIleIleLeu >>>> T : 292 !:! ! ! !|||! !|||||||||:!!||||||! !:!!:!: ! alIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeuThr++ 286749 : TGATTGGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTACTGACGgt...... : 286801 293 : arget Intron 1 >>>> GluLeuGluAsnHisAsnIleValAlaIleValValH : 304 80 bp |||! !|||.!. !.!.! !:!!!.!! :!!..!: ++GluTrpGluGlnSerGluThrIleGlyThrIleThrT 286802 : ...................agGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGT : 286915 305 : isPheMetLeuLeuGlyThrCysIlePheValThrTyrIleValCysTyrIleGlyGl : 323 !!! !! !||||||! !:!!! !! ||| !..!!:!|||:!!||||||||||||:! yrCysThrLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGl 286916 : ATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGA : 286972 324 : nLeuLeuLeuAspGlu >>>> Target Intron 2 >>>> SerAsnAsnLeuA : 333 !:!!|||! !!!:::: 74 bp !! !!.:!!! uIleLeuSerGluGln++ ++CysLeuLysValG 286973 : AATTCTCTCCGAACaggt.........................agtGCTTAAAAGTCG : 287076 334 : laLysThrCysIleThrLeuAsnTrpTyrHisPheProAlaArgLysAlaArgPheLe : 352 .! !:!! ! !! !:!!:!!||||||!.!!!.|||!.!!:!! !|||!:! !|| lyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLe 287077 : GCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTT : 287133 353 : uIleLeuMetIleIleMetSerAsnTyrProValLysLeuThrAlaAlaLysValVal : 371 |||||||!!:.!! !:!!||||||! ! !!:!!||||||||||||!.!|||:!!:!! uIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIle 287134 : GATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATC : 287190 372 : AspValSerLeuThrThrPheThrAspIleMetLysAlaAlaMetGlyTyrLeuAsnM : 391 |||:!!||||||!:!!:!||| !..!:!:! ! ! !:!:..!|||! !:!!: AspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisL 287191 : GATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATT : 287250 392 : et : 391 !! eu 287251 : TG : 287252 vulgar: AfOr6/7 255 391 . KQ414889.1 286690 287252 + 188 M 36 108 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286691 287252 188 + . gene_id 7 ; sequence AfOr6/7 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286691 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286691 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286691 287252 188 + . alignment_id 7 ; Query AfOr6/7 ; Align 286691 256 108 ; Align 286879 292 111 ; Align 287064 329 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr6/7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 18 -> 258 Target range: 262873 -> 263602 19 : PheLeuLysIleIleGlyAlaTrpProAsnAlaIleLysSerProLeuSerSerLysI : 38 .!.|||||| ||||||||||||||| :!! !..!! ! !! !! !..!::!| LeuLeuLysProIleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgI 262874 : CTGCTGAAACCGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAA : 262931 39 : leGlnLysTrpPheIleIleSerPhePheLeuCysLeuGlnIleCysIleValThrPr : 57 || !!::.!!:!!||| ! !!! !! !|||||| !:!!! !! !|||! !|| leIleTrpPheLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIlePr 262932 : TTATCTGGTTTCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCC : 262988 58 : oCysIlePheGluAlaLeuLeuLysGluLysAsnAlaLysArgLysIleHisLeuPhe : 76 |! !|||.!!.!. !:!!|||:!!! :!!||| ! ! ! !|||:!:!!.:!!.!! oSerIleLeuHisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeu 262989 : TTCCATACTTCATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTC : 263045 77 : MetLeuAlaThrAsnThrValAsnGlnValPheLysTyrValIleThrLeuAsnArgS : 96 ! ! ! !.!. ! !! ! :!!.!!!!.|||..! !||| !!.!| GlyProLeuGlyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisS 263046 : GGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACA : 263105 97 : erSerGluLeuLysIleAlaIleArgGluMetLysAsnAspTrpLeuAsnAlaThrPr : 115 ||!.!!!::!!:!! !..!:!:!:!.!.:!!:!!.!.||||||! !! !!.!||| erLysAspIleGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrAr 263106 : GTAAAGATATACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAG : 263162 116 : o<->GluAsnArgTyrIlePheIleThrAsnSerLysIleGlyGlnArgIleMetLeu : 133 ! |||:!!!:! !|||.!.:!:! !|||:!!||| !|||!:: !:!: ! gLeuGluAspGlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAla 263163 : GTTGGAGGATCAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCT : 263219 134 : IleIleValValThrMetTyrAlaSerGlyLeuGlyTyrArgMetValLeuProLeuL : 153 ! !!.!:!! !||| ! .!!||| !:!! !! ! !!:!:||| ! !!!!! SerCysAlaIlePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheT 263220 : TCTTGCGCGATCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCA : 263279 154 : euLysGlyLysIleIleLeuProAsnAsnValThrIle<->ArgLeuLeuProCysPr : 171 !! ! ! !||| ! !|||.!...!! !||| |||:!!||||||||||| hrThrGlnValIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysPr 263280 : CTACACAGGTGATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCC : 263336 172 : oThrTyrPheThrPhePheAsnGluLeuValSerProTyrTyrGluMetIlePheIle : 190 |..!||| !.!!.!! ! !..!!:!||| !!|||!!:.!!.!! ! oValTyrLysGluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAla 263337 : AGTGTACAAAGAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCC : 263393 191 : LeuGlnLeuLeuAlaGlyCysPheIleTyrThrValLeuSerGlyThrIleGlyIleS : 210 !|||!!!|||:!!|||! !.!!:!! !.!!..! ! !|||.!!.!!|||!!:! ThrGlnPheLeuSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetT 263394 : ACGCAATTTCTGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGA : 263453 211 : erLeuMetLeuSerLeuHisMetCysSerLeuLeuLysIleLeuSerLysLysLeuVa : 229 !! !:!!!!!:!! !||| |||.!!! !|||!!.:!:|||! !... !:!!.. hrAlaValPheAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleTh 263454 : CAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCAC : 263510 230 : lAspLeuAlaAspGlySer<->IleThrAsnGluAsnIleMetGlnGluLysPheVal : 247 !!!:!!!!.!:!! !||| ! !|||:!!|||:!! :!!.!.! ! rGluPheValAsnGlnSerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGly 263511 : GGAATTCGTGAACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGC : 263567 248 : AspIleValGluTyrGlnThrLysIleLysArg : 258 ! |||||||||:!!!!. !!:!:!! !||| ValIleValGluHisHisLeuArgValLeuArg 263568 : GTGATCGTTGAACATCATCTGAGAGTTCTGAGG : 263602 vulgar: AfOr6/7 18 258 . KQ414889.1 262873 263602 + 165 M 97 291 G 0 3 M 50 150 G 0 3 M 70 210 G 0 3 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262874 263602 165 + . gene_id 8 ; sequence AfOr6/7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262874 263602 . + . KQ414889.1 exonerate:protein2genome:local exon 262874 263602 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262874 263602 165 + . alignment_id 8 ; Query AfOr6/7 ; Align 262874 19 291 ; Align 263168 116 150 ; Align 263321 166 210 ; Align 263534 236 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr6/7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 269 -> 391 Target range: 280025 -> 280465 270 : PheCysPheTyrAspIleSerPheAsnThrCysLeuIleCysPheValGlyTyrCysI : 289 !!.|||!:!!:! !!||| !.!. ! ! ! !.!! !.!. !..!! ! : LeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerLeuSerV 280026 : TTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGTTGTCAG : 280083 290 : leIleLeuGluLeuGluAsnHisAsnIleValAlaIleValValHisPheMetLeuLe : 308 !!.!!! !|||! !|||.!.:!!:!! !:!!!.!! !!..!:!!!!.|||!!!|| alPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLe 280084 : TTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCT : 280140 309 : uGlyThrCysIlePheValThrTyrIleValCysTyrIleGlyGlnLeuLeuLeuAsp : 327 | !:!!! ! ||| !..!!:!|||:!!||||||||||||:!!:!!|||! !!!: uIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGlu 280141 : CATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAA : 280197 328 : GluSerAsnAsnLeuAlaLysThrCysIle{Th} >>>> Target Intron 1 > : 338 ::: ::::::...||| ! !{ } 74 bp GlnValPhePheIleSerSerThrIleTyr{**}-+ 280198 : CaggtatttttcatttcttcaacGATCTAT{TA}tt...................... : 280234 339 : >>> {r}LeuAsnTrpTyrHisPheProAlaArgLysAlaArgPheLeuIleLeuMe : 355 {!}:!!:!!||||||!.!!!.|||!.!!:!||||||!:! !|||||||||!! +-{*}IleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIl 280235 : ...at{G}ATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGAT : 280355 356 : tIleIleMetSerAsnTyrProValLysLeuThrAlaAlaLysValValAspValSer : 374 :.!! !:!!||||||! ! !!:!!||||||||||||!.!|||:!!:!!|||:!!||| ePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSer 280356 : ATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCT : 280412 375 : LeuThrThrPheThrAspIleMetLysAlaAlaMetGlyTyrLeuAsnMet : 391 |||!:!!:!||| !..!:!:! ! ! !:!:..!|||! !:!!:!! LeuSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280413 : TTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: AfOr6/7 269 391 . KQ414889.1 280025 280465 + 143 M 68 204 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280026 280465 143 + . gene_id 9 ; sequence AfOr6/7 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280026 280231 . + . KQ414889.1 exonerate:protein2genome:local exon 280026 280231 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280232 280233 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 280232 280305 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280304 280305 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 280306 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280306 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280026 280465 143 + . alignment_id 9 ; Query AfOr6/7 ; Align 280026 270 204 ; Align 280307 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr6/7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 326 -> 396 Target range: 301871 -> 302163 327 : AspGluSerAsnAsnLeuAlaLysThrCysIleThrLeuAsnTrpTyrHisPheProA : 346 ||| !!!!!!:!.!.:!!!.!..!.!!! ! !:!!:!!||||||:!!!!.|||| Asp***CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProA 301872 : GATTAGTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAG : 301929 347 : laArgLysAlaArgPheLeuIleLeuMetIleIleMetSerAsnTyrProValLysLe : 365 ||!:!!:!||| ! !|||||||||:!:! !:!:!!:|||.!.|||||| !||||| laLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLe 301930 : CGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACT : 301986 366 : uThrAlaAlaLysValValAspValSerLeuThrThrPheThrAsp >>>> Targe : 381 |||||||!.!|||:!!:!!|||:!!||||||!.!||||||!:!..! uThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSer++ 301987 : TACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTgt.......... : 302036 382 : t Intron 1 >>>> IleMetLysAlaAlaMetGlyTyrLeuAsnMetLeuArgGl : 394 82 bp :!::!!|||.!!:!!:!!! !|||||||||:!:|||||| ++ValValLysThrSerValValTyrLeuAsnLeuLeuArgTh 302037 : ...............agGTGGTGAAAACATCGGTGGTGTACTTGAATTTACTGCGAAC : 302155 395 : uValThr : 396 !|||||| rValThr 302156 : AGTTACA : 302163 vulgar: AfOr6/7 326 396 . KQ414889.1 301871 302163 + 143 M 54 162 5 0 2 I 0 78 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301872 302163 143 + . gene_id 10 ; sequence AfOr6/7 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301872 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301872 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302163 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302163 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301872 302163 143 + . alignment_id 10 ; Query AfOr6/7 ; Align 301872 327 162 ; Align 302116 381 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr6/7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 324 -> 386 Target range: 292380 -> 292566 325 : LeuLeuAspGluSerAsnAsnLeuAlaLysThrCysIleThrLeuAsnTrpTyrHisP : 344 :!!||| !!:!!.!!!:!.!.:!!||| ! .!!! ! ! ! !.!.||||||:!!. ValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnL 292381 : GTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATC : 292438 345 : heProAlaArgLysAlaArgPheLeuIleLeuMetIleIleMetSerAsnTyrProVa : 363 !.||| !|||||||||||| !:!!:!!|||:!!:!! !!!:!!!!!.:!!|||:! euProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIl 292439 : TGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGAT : 292495 364 : lLysLeuThrAlaAlaLysValValAspValSerLeuThrThrPheThrAspIleMet : 382 !||||||||||||!.!|||:!! !!! !:!!||||||!.!|||||| !! !:!! eLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArg 292496 : CAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGT : 292552 383 : LysAlaAlaMet : 386 :!!:!! !:!: GluSerLysLeu 292553 : GAATCAAAACTA : 292566 vulgar: AfOr6/7 324 386 . KQ414889.1 292380 292566 + 115 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292381 292566 115 + . gene_id 11 ; sequence AfOr6/7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292381 292566 . + . KQ414889.1 exonerate:protein2genome:local exon 292381 292566 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292381 292566 115 + . alignment_id 11 ; Query AfOr6/7 ; Align 292381 325 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 575 Query range: 0 -> 257 Target range: 204200 -> 204977 1 : MetValGlnIleArgAsnAlaLysGluGlyLeuLysHisThrPheTrpLeuAlaTyrP : 20 ||| ! !||| !!..|||:!!|||! !|||!:!:!!.!! ! !!!!.! ! | MetSerGlyIleAlaArgAlaGluGluAspLeuArgTyrAlaThrArgPheValLysP 204201 : ATGTCTGGAATCGCGAGGGCAGAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGC : 204258 21 : roPheSerArgMetLeuGlyHisTrpProLeuSerValSerSerSerAlaPheSerLy : 39 ||.!!! ! !!!!::!!||| ||||||:!! !!|||!:!|||||| !!|||!!!!: roIleLeuGlyIleValGlyAlaTrpProIleProValAsnSerSerProPheThrAr 204259 : CGATTTTAGGGATAGTCGGTGCGTGGCCGATTCCAGTGAACTCCTCTCCGTTCACGAG : 204315 40 : sIleLeuAsnSerPheIleIlePheIleSerTyrLeuLeuGlnLeuIleValLeuIle : 58 !:!!:!!... !!.!. ! ! ! :!!!!!|||...||| ...::::!!:!!:!! gLeuValArgArgIleGluHisValValThrTyrPheLeuPhePheLeuMetIleVal 204316 : GCTAGTACGGCGAATAGAACACGTAGTCACCtatttcctcttctttctgaTGATCGTA : 204372 59 : ProSerLeuLeuTyrValPheLeuLysGluLysAsnProArgLysLysIleLysLeuL : 78 |||.!!|||||||||||||||||||||||||||||| !!:!! ::::!:|||:!!| ProGlyLeuLeuTyrValPheLeuLysGluLysAsnGlyLysIleArgLeuLysIleL 204373 : CCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTC : 204432 79 : euMetProHisValAsnIleIleAlaGlnMetIleLysTyrThrIleLeuLeuArgAr : 97 || !||| !|||||| !! ! !|||.!..!!||||||:!!:!!:!!||| !|| euGlyProIleValAsnCysSerIleGlnPhePheLysTyrSerValIleLeuTyrAr 204433 : TCGGGCCGATCGTGAACTGCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCG : 204489 98 : gMetLysGlnIleGlyLysLeuLeuAspGluIleArgLysAspTrpSerIleAlaThr : 116 |!!: ! :!!||| !||| !|||:!! ||||||:::||||||! ! |||||| gIleAspLysIleGlnLysSerLeuAsnThrIleArgArgAspTrpIleGluAlaThr 204490 : GATCGACAAAATTCAGAAGAGTTTGAACACCATCAGACGCGACTGGATAGAGGCTACG : 204546 117 : GluGluAsnArgGlnIlePheSerAlaThrAlaSerIleGluHisLysMetThrSerI : 136 !!:||||||||| !|||||| !!:!!! !|||!.!|||! !!..!:!:!! ! !| AspGluAsnArgLeuIlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuI 204547 : GATGAAAATCGGTTGATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGA : 204606 137 : leIleAlaValThrValTyrGlyGlyGlyPheLeuTyrArgThrIleLeuProPheSe : 155 || !|||!.!|||:!!||||||||||||!!.! !||||||||||||||||||!!.! leAlaAlaAlaThrMetTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLe 204607 : TTGCAGCCGCCACTATGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTT : 204663 156 : rLysGlyLysLeuValLeuSerAsnAsnValThrIleArgLeuLeuProCysProGly : 174 !!:!|||! !:!!||| ! !!:!!|||||||||||||||! !||||||||||||! ! uArgGlyThrIleValThrProAspAsnValThrIleArgProLeuProCysProVal 204664 : GAGAGGAACGATCGTAACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTT : 204720 175 : TyrPheGlySerLeuAsnGluGlnValThrProAsnTyrGluIleIlePheThrLeuG : 194 |||||| ...||||||||| !:!!|||||||||||||||:!!|||! !|||| TyrPheValPhePheAsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuG 204721 : tactttgttttctttaacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGC : 204780 195 : lnValLeuAlaGlyPheIleIleTyrThrAlaValCysSerThrLysSerIleCysLe : 213 ||:!!:!!|||||||||:!!! !|||.!!!.!:!! !!.!!||| .!!!!:||| lnIleMetAlaGlyPheValThrTyrAlaValIleSerGlyThrCysGlyMetCysAl 204781 : AAATTATGGCTGGTTTTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGC : 204837 214 : uMetLeuCysLeuHisMetCysGlyLeuLeuArgIleLeuThrAsnLysValMetGlu : 232 !:!!!!! !|||||| !|||.!!:!!||||||||||||..!||||||:!!! ! ! aLeuPheValLeuHisAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAla 204838 : GCTGTTCGTTCTCCACGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCA : 204894 233 : LeuThrAsn<-><->AspAsnAspGluArgValValGlnGluLysIleValHisIleV : 250 |||..!:!! |||! !|||! !:!!|||!!...!||||||!.! !!|||| LeuValAspLysAlaAspMetThrGluThrLeuValHisArgLysIleAlaAspIleV 204895 : CTTGTGGATAAGGCGGACATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTG : 204954 251 : alGluTyrGlnMetArgIleLys : 257 |||||||||||! !!:!|||||| alGluTyrGlnThrLysIleLys 204955 : TTGAATATCAGACGAAGATAAAG : 204977 vulgar: AfOr10 0 257 . KQ414889.1 204200 204977 + 575 M 235 705 G 0 6 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204201 204977 575 + . gene_id 1 ; sequence AfOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204201 204977 . + . KQ414889.1 exonerate:protein2genome:local exon 204201 204977 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 204201 204977 575 + . alignment_id 1 ; Query AfOr10 ; Align 204201 1 705 ; Align 204912 236 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 235 Query range: 291 -> 381 Target range: 206050 -> 206401 292 : GluTrpGlnGluAsnAsnGlyMetGlyIleIleThrTyrValLeuValGlnMetThrC : 311 ||||||:!!.!.|||||| !! !.!:!!|||..!|||:!! !:!!|||!!::!!| GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 312 : ysLeuIleGlyAlaPheSerValCysTyrValGlyGlnLeuLeuPheAspGlu >>> : 329 || !.!! !!!.!|||! !:!!||||||:!!||||||||||||.!!|||:!! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 330 : > Target Intron 1 >>>> SerGluAsnValArgGlnAlaTyrAsnThrLeuL : 340 81 bp !:!.!. !||| !! !.!!! ! !|||:!!! ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 341 : ysTrpTyrGluLeuProIleArgLysSerArgSerLeuIleLeuLeuIleIleMetSe : 359 !.||||||...||||||! !||| ! :!!||||||:!!||||||:!!||| !||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 360 : rAsnTyrProIleLysIleThrAlaGlyLysIleIleAspLeuSerLeuValThrPhe : 378 ||||||||||||||||:!!||||||||||||!!:.!!!!::!!||||||!.!!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 379 : ThrAsnIle : 381 |||:!!:!! ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: AfOr10 291 381 . KQ414889.1 206050 206401 + 235 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 235 + . gene_id 2 ; sequence AfOr10 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 235 + . alignment_id 2 ; Query AfOr10 ; Align 206051 292 111 ; Align 206243 329 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 232 Query range: 5 -> 290 Target range: 232438 -> 234620 6 : AsnAlaLysGluGlyLeuLysHisThrPheTrpLeuAlaTyrProPheSerArgMetL : 25 ||||||! !..!! !! !:!!:!!!:!.!! !:!! ! ! !||| !! ! !: AsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProM 232439 : AACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGA : 232496 26 : euGlyHisTrpProLeuSerValSerSerSerAlaPheSerLysIleLeuAsnSerPh : 44 !!||| ||||||! ! !..!..!!!!||| ! !..!:!!:!!||| !.!.! etGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLe 232497 : TGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACT : 232553 45 : eIleIlePheIleSerTyrLeuLeuGlnLeuIleValLeuIleProSerLeuLeuTyr : 63 .:!:! !.!!! !!!!:!!! !|||..!:!! ! !:!!:!!|||!!!:!!|||!:! uLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPhe 232554 : GTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTC : 232610 64 : ValPheLeuLysGluLysAsnProArgLysLysIleLysLeuLeuMetProHisValA : 83 :!!.!.!!!:!!!!:! !!:!! !..!:!!!:!!!:|||! !:!! ||| !: IleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerH 232611 : ATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTC : 232670 84 : snIleIleAlaGlnMetIleLysTyrThrIleLeuLeuArgArgMetLysGlnIleGl : 102 !!.!!:!: ! :!:!!.||| ! !|||||| !!:! !!!..!.||| isPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLe 232671 : ACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCT : 232727 103 : yLysLeuLeuAspGluIleArgLysAspTrp<->SerIleAlaThrGluGluAsnArg : 120 ! ! ! !:!!!!::!!:!:!:!:!!|||||| !:!:!! !! ! ! :!!||| uTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArg 232728 : CTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGT : 232784 121 : GlnIlePheSerAlaThrAlaSerIleGluHisLysMetThrSerIleIleAlaValT : 140 .!.:!:.!.! ! !!.!|||!.!:!!! !!.!..!!!:.!!!!!||| !||| !! AspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheC 232785 : GATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTT : 232844 141 : hrValTyrGlyGlyGlyPheLeuTyrArgThrIleLeuProPheSerLysGlyLysLe : 159 !:!!:!! !|||! ! !! ! !!..!! !:!! ! !.!! !!! !.!!! !!! ysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPh 232845 : GCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTT : 232901 160 : uValLeuSerAsn<->AsnValThrIleArgLeuLeuProCysProGlyTyrPheGly : 177 ! !:!!.!!||| !:! !:!!!!: !! !||||||||| !! !||| ! eTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLys 232902 : CTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAG : 232958 178 : SerLeuAsnGluGlnValThrProAsnTyrGluIleIlePheThrLeuGlnValLeuA : 197 !:!!:!! ::! !!!:!|||!.. !!||||||!!:|||..!|||||| !|||: LeuMetAspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuS 232959 : CTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCT : 233018 198 : laGlyPheIleIleTyrThrAlaValCysSerThrLysSerIleCysLeuMetLeuCy : 216 !!|||||||||:!: !!:!!!.!..! .!!.!! .!!:!! !! !:!:|||.. erGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAl 233019 : CCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGC : 233075 217 : sLeuHisMetCysGlyLeuLeuArgIleLeuThrAsnLysValMetGluLeuThrAsn : 235 .:!!||| !||||||! !|||!.!:!::!!! !:::|||:!! !!:|||..!:!! aMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAsp 233076 : GATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGAC : 233132 236 : <-><->AspAsnAspGluArgValValGlnGluLysIleValHisIleValGluTyrG : 253 ! .!.!!:|||||||||!.!|||..!|||:!!! ! !|||||||||:!!! AlaLysGlyGlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisH 233133 : GCGAAAGGGCAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATC : 233192 254 : lnMetArgIleLys{Gl} >>>> Target Intron 1 >>>> {u}PheLeuAs : 261 !.:!!|||! ! !{..} 1315 bp {.}|||:!!.. isLeuArgThrLeu{Se}++ ++{r}PheIleAr 233193 : ATTTGCGTACATTA{AG}gt.........................ag{T}TTTATACG : 234531 262 : nGlnLeuAspGlnPheIleProAlaIleCysLeuIleGluValPheIleGlnValLeu : 280 ..!.:!!!!:.!. !!!!: ! !|||||||||:!!|||:!! ! ! ..!||| gAsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuValGlyCysThrLeu 234532 : GAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACGTTG : 234588 281 : IleMetCysIleIleGlyTyrCysIleIle : 290 ! !||||||!!::!!! !|||! !:!!:!! AsnMetCysMetLeuGluTyrTyrLeuLeu 234589 : AACATGTGCATGCTCGAGTATTATTTACTC : 234620 vulgar: AfOr10 5 290 . KQ414889.1 232438 234620 + 232 M 107 321 G 0 3 M 51 153 G 0 3 M 72 216 G 0 6 M 22 66 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232439 234620 232 + . gene_id 3 ; sequence AfOr10 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232439 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232439 233208 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234620 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234620 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232439 234620 232 + . alignment_id 3 ; Query AfOr10 ; Align 232439 6 321 ; Align 232763 113 153 ; Align 232919 164 216 ; Align 233141 236 66 ; Align 234525 259 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 225 Query range: 7 -> 260 Target range: 221363 -> 222134 8 : LysGluGlyLeuLysHisThrPheTrpLeuAlaTyrProPheSerArgMetLeuGlyH : 27 ||| !..!:!!||| !:! ! |||::! ! !.!!! !!:! !:!!||| LysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleGlyV 221364 : AAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTG : 221421 28 : isTrpProLeuSerValSerSerSerAlaPheSerLysIleLeuAsnSerPheIleIl : 46 !|||||| !|||!.!!:!! !|||.!! ! ..!!:! !||| !!!!!.!.|||! alTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLeuIleAs 221422 : TTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAA : 221478 47 : ePheIleSerTyrLeuLeuGlnLeuIleValLeuIleProSerLeuLeuTyrValPhe : 65 ! !!:!!!!!||| !||| !.!!:!!|||:!!|||!!! !|||||||||.!! nValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyrValIle 221479 : CGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATC : 221535 66 : LeuLysGluLysAsnProArgLysLysIleLysLeuLeuMetProHisValAsnIleI : 85 |||:!!! !:!!:!! ! !!!.!:!|||||||||||| ||| ! ! !: LeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysV 221536 : CTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCG : 221595 86 : leAlaGlnMetIleLysTyrThrIleLeuLeuArgArgMetLysGlnIleGlyLysLe : 104 !: ! !.!.:!!|||||| !:!:|||:!!! ! ! !!!..!.||| !!:!!! alMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCy 221596 : TGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTG : 221652 105 : uLeuAspGluIleArgLysAspTrp<->SerIleAlaThrGluGluAsnArgGlnIle : 122 !:!!!!:...|||..! !|||||| !:!|||.!! !...:!!:!!!:!.!.||| sIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLysAspIle 221653 : CATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAGGATATA : 221709 123 : PheSerAlaThrAlaSerIleGluHisLysMetThrSerIleIleAlaValThrValT : 142 .!.! !! !!.!|||! !.!!! ...::!:!!! !! !||| !.!! !! !:!!| MetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheMetT 221710 : ATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGT : 221769 143 : yrGlyGlyGlyPheLeuTyrArgThrIleLeuProPheSerLysGlyLysLeuValLe : 161 ||.!!||| ...||| ! !:!!||||||||| !||||||:!! ! yrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIleProAl 221770 : ACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGC : 221826 162 : uSerAsn<->AsnValThrIleArgLeuLeuProCysProGlyTyrPheGlySerLeu : 179 !..!:!! |||||||||... ! !:!! !! !||| !! !! !:!! aGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPheIleVal 221827 : GCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTC : 221883 180 : AsnGluGlnValThrProAsnTyrGluIleIlePheThrLeuGlnValLeuAlaGlyP : 199 :!! !:! !!:!||| !!||||||:!:|||:!!||||||:!!:!!|||||| AspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyA 221884 : GATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTG : 221943 200 : heIleIleTyrThrAlaValCysSerThrLysSerIleCysLeuMetLeuCysLeuHi : 218 !:!:!!::!!!:! !..!! :!!.!! |||:!: ! !|||!!!..!:!!|| laLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaValHi 221944 : CTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCA : 222000 219 : sMetCysGlyLeuLeuArgIleLeuThrAsnLysValMetGluLeuThrAsnAspAsn : 237 | ||||||! !:!!!:!:!:|||! !!:! !:!!! .!.|||! !|||! !... sAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsnGlyArg 222001 : CGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGCCGG : 222057 238 : AspGluArgVal<-><->ValGlnGluLysIleValHisIleValGluTyrGlnMetA : 255 ! !!:! ! ! |||.!...!!:!|||!.! ! ||||||.!. ! !!.:!:| AlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnHisValA 222058 : GCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAACACGTTC : 222117 256 : rgIleLysGluPheLeu : 260 ||||| !:!!!:!:!! rgIleLeuGlnTyrVal 222118 : GAATATTGCAGTATGTA : 222134 vulgar: AfOr10 7 260 . KQ414889.1 221363 222134 + 225 M 105 315 G 0 3 M 51 153 G 0 3 M 78 234 G 0 6 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221364 222134 225 + . gene_id 4 ; sequence AfOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221364 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221364 222134 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221364 222134 225 + . alignment_id 4 ; Query AfOr10 ; Align 221364 8 315 ; Align 221682 113 153 ; Align 221838 164 234 ; Align 222078 242 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 224 Query range: 22 -> 237 Target range: 262879 -> 263530 23 : ArgMetLeuGlyHisTrpProLeuSerValSerSerSerAlaPheSerLysIleLeuA : 42 !:! !:!!||| ||||||||||||!.!|||! !||| !.!...!::!|||:!! LysProIleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleT 262880 : AAACCGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCT : 262937 43 : snSerPheIleIlePheIleSerTyrLeuLeuGlnLeuIleValLeuIleProSerLe : 61 ! !.!!:!!||| !!:!!!!!|||! !||| !||| !..!:!!|||||||||:! rpPheLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIl 262938 : GGTTTCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCAT : 262994 62 : uLeuTyrValPheLeuLysGluLysAsnProArgLysLysIleLysLeuLeuMetPro : 80 !|||:!!:!! !!|||:!!! :!!||| !!.!! !|||:!::!!:!!||| ||| eLeuHisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyPro 262995 : ACTTCATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCG : 263051 81 : HisValAsnIleIleAlaGlnMetIleLysTyrThrIleLeuLeuArgArgMetLysG : 100 ! !! !.!. .!!!.! ||||||!!.|||||| ||||||! !!.!! |||. LeuGlyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysA 263052 : CTCGGTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAG : 263111 101 : lnIleGlyLysLeuLeuAspGluIleArgLysAspTrpSerIleAlaThrGlu<->Gl : 118 !.||| ! ! !:!!.!..!.:!:!:!:!!||||||!!!|||!.!|||..! || spIleGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGl 263112 : ATATACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGA : 263168 119 : uAsnArgGlnIlePheSerAlaThrAlaSerIleGluHisLysMetThrSerIleIle : 137 |:!!!:!!::|||.!. ! !!.!|||!.! !! !.! ! :!!.!!:!! ! ! uAspGlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCys 263169 : GGATCAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGC : 263225 138 : AlaValThrValTyrGlyGlyGlyPheLeuTyrArgThrIleLeuProPheSerLysG : 157 |||:!! !:!! ! !.!! !.!.! ! ! !! !:!! ! !!|||!!!! ! AlaIlePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrG 263226 : GCGATCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACAC : 263285 158 : lyLysLeuValLeuSerAsnAsnValThrIle<->ArgLeuLeuProCysProGlyTy : 175 ! !:!!! ! !.!!|||.!...!! !||| |||:!!||||||||||||! !|| lnValIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTy 263286 : AGGTGATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTA : 263342 176 : rPheGlySerLeuAsnGluGlnValThrProAsnTyrGluIleIlePheThrLeuGln : 194 | ! !! !:!! ! .!...!!.!|||!.. !!||||||.!!.!!.!! !||| rLysGluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGln 263343 : CAAAGAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAA : 263399 195 : ValLeuAlaGlyPheIleIleTyrThrAlaValCysSerThrLysSerIleCysLeuM : 214 !!|||:!!|||||||||:!! !.!!.!!..! !.!!.!! .!!!!: !: PheLeuSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaV 263400 : TTTCTGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGG : 263459 215 : etLeuCysLeuHisMetCysGlyLeuLeuArgIleLeuThrAsnLysValMetGluLe : 233 !!!!!..! !||| ||||||! !|||!.!:!:|||! !::! !:!!! !|||!! alPheAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPh 263460 : TGTTCGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATT : 263516 234 : uThrAsnAspAsn : 237 !..!|||.!.::! eValAsnGlnSer 263517 : CGTGAACCAGTCC : 263530 vulgar: AfOr10 22 237 . KQ414889.1 262879 263530 + 224 M 95 285 G 0 3 M 50 150 G 0 3 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262880 263530 224 + . gene_id 5 ; sequence AfOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262880 263530 . + . KQ414889.1 exonerate:protein2genome:local exon 262880 263530 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262880 263530 224 + . alignment_id 5 ; Query AfOr10 ; Align 262880 23 285 ; Align 263168 118 150 ; Align 263321 168 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 211 Query range: 291 -> 396 Target range: 291368 -> 293248 292 : GluTrpGlnGluAsnAsnGlyMetGlyIleIleThrTyrValLeuValGlnMetThrC : 311 ||||||:!!...!:!:!!..!!!:||||||:!!||||||||| !:!!! ! :!!! GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 312 : ysLeuIleGlyAlaPheSerValCysTyrValGlyGlnLeuLeuPheAspGlu >>> : 329 ! !.!!..! !.!.! ! !!||||||||||||:!!||||||.!!! :!! heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln++ 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAGgt... : 291482 330 : > Target Intron 1 >>>> SerGluAsnValArgGlnAlaTyrAsnThrLeuL : 340 913 bp .!!....!.:!! !!!.|||! ! !! ! !: ++GlySerGluIleAlaHisAlaSerTyrAspThrG 291483 : ......................agGGTAGTGAAATCGCGCACGCTTCCTACGATACAG : 292426 341 : ysTrpTyrGluLeuProIleArgLysSerArgSerLeuIleLeuLeuIleIleMetSe : 359 !!||||||.!.||||||! !||||||:!!|||..!:!!:!!|||:!!:!! !!!:!! luTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIleTh 292427 : AATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAAC : 292483 360 : rAsnTyrProIleLysIleThrAlaGlyLysIleIleAspLeuSerLeuValThrPhe : 378 !!!.:!!|||||||||:!!|||||||||||||||.!!! !||||||||| !|||||| rLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPhe 292484 : GAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTT : 292540 379 : ThrAsn >>>> Target Intron 2 >>>> IleIleLysThrAlaAlaSerTy : 388 ! ! 652 bp :!::!:|||:!!:!!!.! !|| GlyAla++ ++ValLeuLysSerSerValValTy 292541 : GGCGCTgt.........................agGTGCTGAAATCGTCGGTAGTTTA : 293222 389 : rMetAsnMetLeuGlnGlnIleThr : 396 |||||||||||||!:! :!!||| rMetAsnMetLeuArgThrValThr 293223 : CATGAACATGCTACGAACCGTCACT : 293248 vulgar: AfOr10 291 396 . KQ414889.1 291368 293248 + 211 M 37 111 5 0 2 I 0 909 3 0 2 M 52 156 5 0 2 I 0 648 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 293248 211 + . gene_id 6 ; sequence AfOr10 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292548 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292548 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 292549 292550 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 292549 293200 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 293199 293200 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 293201 293248 . + . KQ414889.1 exonerate:protein2genome:local exon 293201 293248 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 293248 211 + . alignment_id 6 ; Query AfOr10 ; Align 291369 292 111 ; Align 292393 329 156 ; Align 293201 381 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 289 -> 381 Target range: 224317 -> 224658 290 : IleMetGluTrpGlnGluAsnAsnGlyMetGlyIleIleThrTyrValLeuValGlnM : 309 .!!...||||||......::::!! !! .!! :!:|||||| !!:!!:!!! | PheGlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuM 224318 : TTTCaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCA : 224375 310 : etThrCysLeuIleGlyAlaPheSerValCysTyrValGlyGlnLeuLeuPheAspGl : 328 ||:!: ...... ||| ||||||::!|||:!!|||:!! !!!::: etSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl 224376 : TGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAca : 224432 329 : u >>>> Target Intron 1 >>>> SerGluAsnValArgGlnAlaTyrAsnT : 338 : 65 bp |||...::: |||!.!! !!! n++ ++CysGluLysIleGlyGlnValSerTyrM 224433 : ggt.........................agtgtgaaaaaattggacaAGTGTCGTACA : 224527 339 : hrLeuLysTrpTyrGluLeuProIleArgLysSerArgSerLeuIleLeuLeuIleIl : 357 !:!! ! ||||||..!||| !! !!.!|||!.!! !!!!! !||||||:!!||| etIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAl 224528 : TGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGC : 224584 358 : eMetSerAsnTyrProIleLysIleThrAlaGlyLysIleIleAspLeuSerLeuVal : 376 |||||||||! ! !!||||||:!:|||||||||!!.!!::!!!!:|||!!!|||..! aMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThr 224585 : GATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACC : 224641 377 : ThrPheThrAsnIle : 381 |||||| !:!!:!! ThrPheGlyAspVal 224642 : ACTTTCGGTGACGTA : 224658 vulgar: AfOr10 289 381 . KQ414889.1 224317 224658 + 162 M 39 117 5 0 2 I 0 61 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224318 224658 162 + . gene_id 7 ; sequence AfOr10 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224318 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224318 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224318 224658 162 + . alignment_id 7 ; Query AfOr10 ; Align 224318 290 117 ; Align 224500 329 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 257 -> 381 Target range: 300614 -> 302036 258 : GluPheLeuAsnGlnLeuAspGlnPheIleProAlaIleCysLeuIleGluValPheI : 277 ..!||| !!!..!.:!!!!::!! !:!:! !! !.!!||||||:!:|||:!!||| ArgPheAlaLysAsnValGluGluThrLeuArgAspPheCysLeuValGluIlePheG 300615 : AGATTTGCAAAGAACGTTGAGGAAACTTTGCGTGACTTCTGCTTAGTGGAAATCTTCG : 300672 278 : leGlnValLeuIleMetCysIleIleGly<->TyrCysIleIle >>>> Target : 291 .....!||||||:!!|||:!::!!! ! ||||||:!::!: 104 luSerThrLeuIleLeuCysLeuLeuGluTyrTyrCysLeuVal++ 300673 : AGTCCACGCTGATTTTGTGTTTGCTCGAATACTACTGTTTGGTGgt............ : 300719 292 : Intron 1 >>>> MetGluTrpGlnGluAsnAsnGlyMetGlyIleIleThrTyrV : 305 7 bp !!: ! !!...!...:!!..!.!. !!! ! !||||||: +-IleLeuLeuHisArgArgAspSerPheArgThrGlyThrTyrL 300720 : .............atATTCTGCTACATCGGCGAGATTCTTTCCGAACAGGTACTTACT : 301806 306 : alLeuValGlnMetThrCysLeuIleGlyAlaPheSerValCysTyrValGlyGlnLe : 324 !!! ! !:::... |||......!.!||| !! !! !! !.!! :! euGln***LysPheProPheLeuPheAsnValPheProArgTyrLeuSerSerPheIl 301807 : TACAGTAGAagtttccatttcttttcaatGTATTTCCACGGTATTTAAGCAGCTTTAT : 301863 325 : uLeuPheAspGluSerGluAsnValArgGlnAlaTyrAsnThrLeuLysTrpTyrGlu : 343 ! ! !||| !!!!!....!.:!! !!..!|||! !! !:!! ! ||||||.!. eGlyArgAsp***CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsn 301864 : TGGTCGTGATTAGTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAAT : 301920 344 : LeuProIleArgLysSerArgSerLeuIleLeuLeuIleIleMetSerAsnTyrProI : 363 |||||| !:!!:!:!! !..!||||||||||||! !:!:!!:|||.!.|||||| LeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProP 301921 : TTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGC : 301980 364 : leLysIleThrAlaGlyLysIleIleAspLeuSerLeuValThrPheThrAsnIle : 381 |||:!!|||||||||||||||||||||||||||||| !||||||!:!::!:!! roLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301981 : CGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: AfOr10 257 381 . KQ414889.1 300614 302036 + 148 M 29 87 G 0 3 M 4 12 5 0 2 I 0 1043 3 0 2 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300615 302036 148 + . gene_id 8 ; sequence AfOr10 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300615 300716 . + . KQ414889.1 exonerate:protein2genome:local exon 300615 300716 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300717 300718 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300717 301763 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301762 301763 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 301764 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301764 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300615 302036 148 + . alignment_id 8 ; Query AfOr10 ; Align 300615 258 87 ; Align 300705 287 12 ; Align 301764 291 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 291 -> 381 Target range: 277371 -> 277713 292 : GluTrpGlnGluAsnAsnGlyMetGlyIleIleThrTyrValLeuValGlnMetThrC : 311 ||||||...!!:!:!:!!! !..! !!!:! !|||:!! !!:!!:!!! !!::!! GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 312 : ysLeuIleGlyAlaPheSerValCysTyrValGlyGlnLeuLeuPheAspGlu >>> : 329 ...... |||::!|||||||||:!!|||:!!:!!||| !!!::!! etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 330 : > Target Intron 1 >>>> SerGluAsnValArgGlnAlaTyrAsnThrLeuL : 340 72 bp !!!:!!!!.||| !!:!!!.! ! !!! ! !! ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 341 : ysTrpTyrGluLeuProIleArgLysSerArgSerLeuIleLeuLeuIleIleMetSe : 359 !.|||||| ! |||||| !!:! ! ! !! !!:!|||:!!|||:!!||| !! || snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 360 : rAsnTyrProIleLysIleThrAlaGlyLysIleIleAspLeuSerLeuValThrPhe : 378 |!:! |||||||||||||||||||||:::|||...:::|||:!! !|||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 379 : ThrAsnIle : 381 !:!!:!! GlyAspVal 277703 : GGCGATGTA : 277713 vulgar: AfOr10 291 381 . KQ414889.1 277371 277713 + 145 M 37 111 5 0 2 I 0 68 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277713 145 + . gene_id 9 ; sequence AfOr10 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277713 145 + . alignment_id 9 ; Query AfOr10 ; Align 277372 292 111 ; Align 277555 329 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 291 -> 381 Target range: 272836 -> 273176 292 : GluTrpGlnGluAsnAsnGlyMetGlyIleIleThrTyrValLeuValGlnMetThrC : 311 |||||| !!::!!:!! !..!.!!:!!! !|||||| !!:!!:!!! !!::!! GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 312 : ysLeuIleGlyAlaPheSerValCysTyrValGlyGlnLeuLeuPheAspGlu >>> : 329 ...... ||| |||||||||:!!|||:!!:!!||| !!:..! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 330 : > Target Intron 1 >>>> SerGluAsnValArgGlnAlaTyrAsnThrLeuL : 340 70 bp :::...::: :!!!.! ! !!! ! !! ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 341 : ysTrpTyrGluLeuProIleArgLysSerArgSerLeuIleLeuLeuIleIleMetSe : 359 !.|||||| ! |||||| !!:! ! ! !! !..!|||||||||:!!||| !! !! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 360 : rAsnTyrProIleLysIleThrAlaGlyLysIleIleAspLeuSerLeuValThrPhe : 378 !!:! ! !||||||||||||||||||!:!|||:!! !:!!|||:!! !|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 379 : ThrAsnIle : 381 !:!!:!! GlyAspVal 273166 : GGCGATGTA : 273176 vulgar: AfOr10 291 381 . KQ414889.1 272836 273176 + 133 M 37 111 5 0 2 I 0 66 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273176 133 + . gene_id 10 ; sequence AfOr10 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273176 133 + . alignment_id 10 ; Query AfOr10 ; Align 272837 292 111 ; Align 273018 329 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 338 -> 391 Target range: 280306 -> 280465 339 : LeuLysTrpTyrGluLeuProIleArgLysSerArgSerLeuIleLeuLeuIleIleM : 358 :!! ! ||||||...|||||| !:!|||:!!!:!.!!|||||||||:!!.!! !: IleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaV 280307 : ATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCG : 280364 359 : etSerAsnTyrProIleLysIleThrAlaGlyLysIleIleAspLeuSerLeuValTh : 377 !!||||||! ! !!||||||:!!|||||||||||||||||||||||||||||| !!: alSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSe 280365 : TGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAG : 280421 378 : rPheThrAsnIleIleLysThrAlaAlaSerTyrMetAsnMet : 391 !||| !!:!:!:! !! ! ! ! !|||||| :!!:!! rPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280422 : CTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: AfOr10 338 391 . KQ414889.1 280306 280465 + 125 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280307 280465 125 + . gene_id 11 ; sequence AfOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280307 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280307 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280307 280465 125 + . alignment_id 11 ; Query AfOr10 ; Align 280307 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 328 -> 381 Target range: 305624 -> 305783 329 : SerGluAsnValArgGlnAlaTyrAsnThrLeuLysTrpTyrGluLeuProIleArgL : 348 |||...!:!||| !! !:!!! ! !! !:!!!..||||||.!.||||||! !!:!! SerSerSerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysT 305625 : AGCAGTAGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGA : 305682 349 : ysSerArgSerLeuIleLeuLeuIleIleMetSerAsnTyrProIleLysIleThrAl : 367 !! !!.!.!!|||||||||:!!||| !||||||!:! !!||| !||||||!:!|| hrIleHisGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAl 305683 : CGATACATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGC : 305739 368 : aGlyLysIleIleAspLeuSerLeuValThrPheThrAsnIle : 381 |||||||:!!:!!|||||||||||| !|||||| !|||:!: aGlyLysValValAspLeuSerLeuSerThrPheGlyAsnVal 305740 : TGGTAAAGTAGTTGATTTATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: AfOr10 328 381 . KQ414889.1 305624 305783 + 125 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305625 305783 125 + . gene_id 12 ; sequence AfOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305625 305783 125 + . alignment_id 12 ; Query AfOr10 ; Align 305625 329 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 338 -> 391 Target range: 287093 -> 287252 339 : LeuLysTrpTyrGluLeuProIleArgLysSerArgSerLeuIleLeuLeuIleIleM : 358 :!! ! ||||||...|||||| !!:!! !:!!!:!.!!|||||||||:!!.!! !: IleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaV 287094 : ATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCG : 287151 359 : etSerAsnTyrProIleLysIleThrAlaGlyLysIleIleAspLeuSerLeuValTh : 377 !!||||||! ! !!||||||:!!|||||||||||||||||||||||||||||| !!: alSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSe 287152 : TGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAG : 287208 378 : rPheThrAsnIleIleLysThrAlaAlaSerTyrMetAsnMet : 391 !||| !!:!:!:! !! ! ! ! !|||||| :!!:!! rPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 287209 : CTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 287252 vulgar: AfOr10 338 391 . KQ414889.1 287093 287252 + 119 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287094 287252 119 + . gene_id 13 ; sequence AfOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287094 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287094 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287094 287252 119 + . alignment_id 13 ; Query AfOr10 ; Align 287094 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 340 -> 384 Target range: 238664 -> 238796 341 : TrpTyrGluLeuProIleArgLysSerArgSerLeuIleLeuLeuIleIleMetSerA : 360 |||||| ! |||||| |||!:!! !! !..!|||||||||:!!|||! ! |||| TrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSerA 238665 : TGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGA : 238722 361 : snTyrProIleLysIleThrAlaGlyLysIleIleAspLeuSerLeuValThrPheTh : 379 || !:!!|||:!!||||||||||||:!!:!! !!:!!|||||| !|||||| snValValValLysValThrAlaGlyLysValLeuHisMetSerLeuTyrThrPheGl 238723 : ACGTGGTCGTTAAAGTCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGG : 238779 380 : rAsnIleIleLysThr : 384 !:!!:!!! !:!!||| yAspValSerGluThr 238780 : CGATGTAAGTGAAACT : 238796 vulgar: AfOr10 340 384 . KQ414889.1 238664 238796 + 109 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238665 238796 109 + . gene_id 14 ; sequence AfOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238665 238796 . + . KQ414889.1 exonerate:protein2genome:local exon 238665 238796 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238665 238796 109 + . alignment_id 14 ; Query AfOr10 ; Align 238665 341 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 340 -> 384 Target range: 254310 -> 254442 341 : TrpTyrGluLeuProIleArgLysSerArgSerLeuIleLeuLeuIleIleMetSerA : 360 |||||| ! |||||| |||!:!! !! !..!|||||||||:!!|||! ! |||| TrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerA 254311 : TGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGA : 254368 361 : snTyrProIleLysIleThrAlaGlyLysIleIleAspLeuSerLeuValThrPheTh : 379 || !:!!:!!||||||||||||||||||... :::|||||| !|||||| snValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGl 254369 : ACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGG : 254425 380 : rAsnIleIleLysThr : 384 !:!!:!!! !:!!||| yAspValSerGluThr 254426 : CGATGTAAGTGAAACT : 254442 vulgar: AfOr10 340 384 . KQ414889.1 254310 254442 + 107 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254311 254442 107 + . gene_id 15 ; sequence AfOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254311 254442 . + . KQ414889.1 exonerate:protein2genome:local exon 254311 254442 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254311 254442 107 + . alignment_id 15 ; Query AfOr10 ; Align 254311 341 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 340 -> 384 Target range: 244694 -> 244826 341 : TrpTyrGluLeuProIleArgLysSerArgSerLeuIleLeuLeuIleIleMetSerA : 360 |||||| ! |||||| |||!:!! !! !..!|||||||||:!!|||! ! |||| TrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSerA 244695 : TGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGA : 244752 361 : snTyrProIleLysIleThrAlaGlyLysIleIleAspLeuSerLeuValThrPheTh : 379 || !:!!:!!|||||||||||||||:!!:!! !!:!!|||||| !|||||| snMetValValGluIleThrAlaGlyLysValLeuHisMetSerLeuTyrThrPheGl 244753 : ACATGGTCGTTGAAATCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGG : 244809 380 : rAsnIleIleLysThr : 384 !:!!:!!! !:!!||| yAspValSerGluThr 244810 : CGATGTAAGTGAAACT : 244826 vulgar: AfOr10 340 384 . KQ414889.1 244694 244826 + 106 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244695 244826 106 + . gene_id 16 ; sequence AfOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244695 244826 . + . KQ414889.1 exonerate:protein2genome:local exon 244695 244826 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244695 244826 106 + . alignment_id 16 ; Query AfOr10 ; Align 244695 341 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 338 -> 381 Target range: 219542 -> 219671 339 : LeuLysTrpTyrGluLeuProIleArgLysSerArgSerLeuIleLeuLeuIleIleM : 358 :!!:!!||||||..!||| !! !!:!|||!.!! !!!! !:!!||| !||| !| IleGluTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaM 219543 : ATCGAATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTA : 219600 359 : etSerAsnTyrProIleLysIleThrAlaGlyLysIleIleAspLeuSerLeuValTh : 377 ||||||||! ! !!||||||:!:|||||||||!!.!!::!!!!:||||||:!! !|| etSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerTh 219601 : TGTCGAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCAC : 219657 378 : rPheThrAsnIle : 381 |||||||:!!:!: rPheThrAspVal 219658 : TTTTACCGACGTG : 219671 vulgar: AfOr10 338 381 . KQ414889.1 219542 219671 + 101 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219543 219671 101 + . gene_id 17 ; sequence AfOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219543 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219543 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219543 219671 101 + . alignment_id 17 ; Query AfOr10 ; Align 219543 339 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 324 -> 381 Target range: 264714 -> 264885 325 : LeuPheAspGluSerGluAsnValArgGlnAlaTyrAsnThrLeuLysTrpTyrGluL : 344 :!!||| ! :!!!!!:!!!!.||| !!:!!!.! ! !!! !! !!!.|||||| ! | IlePhe***GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrL 264715 : ATTTTCTAACAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACT : 264772 345 : euProIleArgLysSerArgSerLeuIleLeuLeuIleIleMetSerAsnTyrProIl : 363 ||||| !!:! ! ! !! !..!|||||||||:!!|||:!!! |||!:! !.! euProTyrLysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPh 264773 : TACCCTACAAAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTT : 264829 364 : eLysIleThrAlaGlyLysIleIleAspLeuSerLeuValThrPheThrAsnIle : 381 !|||.!!|||||||||||||||:!! !!:!!|||:!! !||||||!:!:!!:!! eLysPheThrAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264830 : TAAATTCACCGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: AfOr10 324 381 . KQ414889.1 264714 264885 + 101 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264715 264885 101 + . gene_id 18 ; sequence AfOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264715 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264715 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264715 264885 101 + . alignment_id 18 ; Query AfOr10 ; Align 264715 325 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr1 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1499 Query range: 0 -> 403 Target range: 194108 -> 198627 1 : MetGlyGluGluIleGlyAsnThrThrAsnTyrArgAsnIleHisTyrLysSerAspA : 20 |||! !|||||||||...... :::||||||||||||:!!:!!||||||! !|||. MetValGluGluIleAlaLysLysSerAsnTyrArgAsnValAsnTyrLysLeuAspT 194109 : ATGGTCgaagaaatcgcgaagaaatcgAATTACCGCAACGTCAATTACAAATTGGACA : 194166 21 : laGluTyrThrValHisValAlaLysThrLeuLeuThrLeuIleGlyIleTrpProAr : 39 !!||||||.!!|||!..|||||||||.!!|||||||||! !||||||||||||||||| hrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProAr 194167 : CCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAAG : 194223 40 : gArgAsnThrPheValAspAsnValLysPheTyrValGlnIleGlyIleValPhePhe : 58 |..!:!!:!!.!! !|||!..|||::!.!.!:!!.!|||! !|||:!:|||||| ! gGluAspSerLeuArgAspArgValArgLeuPheAlaGlnThrGlyValValPheAla 194224 : GGAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTTCGCT : 194280 59 : LeuMetCysPheLeuLeuLeuProHisValIleTyrThrTyrPheAspCysGluAsnL : 78 ||||||||||||||||||:!!|||||||||||||||||||||||||||||||||:!!| LeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCysGluAspL 194281 : TTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAGGATC : 194340 79 : euThrLysTyrMetLysValIleAlaAlaGlnIlePheSerLeuLeuAlaIleIleLy : 97 |||||!:!||||||||||||||||||||||||:!:||||||||||||||||||||||| euThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleIleLy 194341 : TGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCATCAA : 194397 98 : sPheTrpThrIleIleIleAsnArgGluGluIleArgPheCysLeuMetGluMetGlu : 116 ||||||||||!!:|||:!:||||||:!!||||||||||||||||||:!!||||||||| sPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGluMetGlu 194398 : GTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGATGGAG : 194454 117 : IleGlnTyrArgAspValGluCysGluGluAspArgSerValMetMetAsnThrAlaL : 136 ! |||||||||||||||||||||||||||||||||..!||||||! !||| !|||| ThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsnCysAlaL 194455 : ACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGCGCGA : 194514 137 : ysIleGlyArgPhePheThrIleValTyrLeuSerLeuSerTyrThrGlyAlaLeuPr : 155 ||||||||||||||||||||! !:!!||||||.!!||||||||| !||||||||||| ysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaLeuPr 194515 : AAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTTTGCC : 194571 156 : oTyrHisIleIleLeuProLeuIleSerGluArgIleValLysGluAspAsnThrThr : 174 ||||||||||||||||||||||!!:|||||||||||||||||||||||||||!:!||| oTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGluAspAsnSerThr 194572 : GTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAACAGTACT : 194628 175 : ArgIleProLeuProTyrLeuSerAspTyrValPhePheValIleGluAspSerProI : 194 !:!|||||||||||||||||||||:!!||||||||||||!.!|||||||||||||||| GlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAspSerProI 194629 : CAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGACTCGCCGA : 194688 195 : leTyrGluMetThrPheValLeuGlnIlePheIleSerSerIleIleLeuSerThrAs : 213 ||||||||!!:|||||||||! !||||||.!.|||||||||||||||||||||||||| leTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuSerThrAs 194689 : TTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGTCGACGAA : 194745 214 : nCysGlyThrTyrSerLeuIleAlaSerIleThrMetHisCysCysGlyLeuPheGlu : 232 |||||||! !|||||||||:!!|||!!!|||! !|||||||||||||||||||||||| nCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGlyLeuPheGlu 194746 : TTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTTGTTCGAA : 194802 233 : ValThrAsnArgLysIleGluThrLeuCysLysTrpAspAsnArgAsnLeuHisAspA : 252 ||||||!:!|||!:!!!:||||||:!!! ! ! !...!:!:!!:!!!..! !| ValThrSerArgArgMetGluThrIleSerValProThrGlyLysAspIleArgGlyA 194803 : GTGACCAGCAGAAGGATGGAGACTATTTCTGTGCCCACTGGGAAGGATATTCGGGGTA : 194862 253 : rgValIleAspIleValGlnSerHisLeuLysAlaIle{Gl} >>>> Target In : 265 ||:!!! |||:!!||||||! !|||||||||||||||{:!} 1391 rgLeuArgAspValValGlnPheHisLeuLysAlaIle{Ly}++ 194863 : GACTTAGGGACGTCGTTCAGTTTCATCTGAAAGCAATT{AA}gt.............. : 194905 266 : tron 1 >>>> {u}TyrSerAlaArgValGlyGluSerLeuSerIleValPheLeu : 279 bp {!}::!:!!! !! !:!!! !:!!:!!|||!:!|||||||||||| ++{s}PheAlaGluMetIleGluLysAlaLeuAsnIleValPheLeu 194906 : ...........ag{a}tTCGCTGAAATGATCGAGAAAGCACTGAACATCGTGTTTCTA : 196334 280 : SerGluMetLeuGlyCysThrValIleIleCysPheLeuGluPheGlyValIleMet : 299 |||||||||||||||||||||:!!||||||||||||||||||!:!|||||||||:!! SerGluMetLeuGlyCysThrIleIleIleCysPheLeuGluTyrGlyValIleVal+ 196335 : TCAGAGATGCTTGGCTGCACTATCATCATATGTTTCCTGGAATACGGTGTAATCGTGg : 196394 300 : >>>> Target Intron 2 >>>> GluLeuGluAspHisLysThrLeuSerThr : 308 65 bp !!:! !! ||||||||||||||||||! ! + ++AspTrpAlaAspHisLysThrLeuSerMet 196395 : t.........................agGATTGGGCCGATCACAAGACACTCAGCATG : 196486 309 : ValThrTyrPheValLeuMetThrSerIlePheValAsnValPheIleIleSerPheI : 328 :!!||||||||||||||||||||||||||||||||||||||||||||||||||||||| MetThrTyrPheValLeuMetThrSerIlePheValAsnValPheIleIleSerPheI 196487 : ATGACGTACTTCGTTCTGATGACATCGATATTCGTGAACGTGTTCATAATCTCGTTCA : 196546 329 : leGlyAspArgLeuLysGlnGlu >>>> Target Intron 3 >>>> SerGlu : 337 ||||||||||||||||||||! 82 bp |||||| leGlyAspArgLeuLysGlnVal++ ++SerGlu 196547 : TCGGTGATCGTCTTAAACAAGTggt.........................agAGCGAA : 196655 338 : ArgIleArgGluThrSerTyrPheIleProTrpTyrAspPheProThrGluValAlaL : 357 |||:!! !!|||||||||||||||!!:||||||||||||.!!||| !!!::!!|||| ArgValGlyGluThrSerTyrPheMetProTrpTyrAspLeuProAspAspLeuAlaL 196656 : AGAGTAGGCGAAACGTCGTACTTCATGCCGTGGTACGATCTTCCGGACGATTTAGCCA : 196715 358 : ysAsnIleLysIleIleIleLeuArgAlaSerArgProSerSerLeuSerGlyAlaLy : 376 ||||||||!:!! ||||||||||||||||||!.!||||||||||||||||||||||| ysAsnIleArgThrIleIleLeuArgAlaSerHisProSerSerLeuSerGlyAlaLy 196716 : AGAATATAAGAACGATCATACTAAGAGCCAGTCATCCGTCAAGTTTGTCTGGCGCCAA : 196772 377 : sIleLeuAspLeuSerLeuGlnAlaPheCysAsp >>>> Target Intron 4 > : 388 |:!:!!!||||||||||||||||||||||||||| 1772 bp sLeuPheAspLeuSerLeuGlnAlaPheCysAsp++ 196773 : GTTGTTCGATCTTTCGCTTCAAGCATTTTGCGACgt...................... : 196810 389 : >>> ValCysLysThrSerAlaAlaTyrPheAsnPheLeuArgAlaMetThr : 403 ||||||||||||||||||||||||||||||||||||:::||||||||| ++ValCysLysThrSerAlaAlaTyrPheAsnPheLeuGlnAlaMetThr 196811 : ...agGTTTGCAAAACTTCTGCGGCctacttcaattttctacaagCAATGACA : 198627 vulgar: AfOr1 0 403 . KQ414889.1 194108 198627 + 1499 M 264 792 S 0 2 5 0 2 I 0 1387 3 0 2 S 1 1 M 33 99 5 0 2 I 0 61 3 0 2 M 37 111 5 0 2 I 0 78 3 0 2 M 52 156 5 0 2 I 0 1768 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194109 198627 1499 + . gene_id 1 ; sequence AfOr1 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 194109 194902 . + . KQ414889.1 exonerate:protein2genome:local exon 194109 194902 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 194903 194904 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 194903 196293 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 196292 196293 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 196294 196393 . + . KQ414889.1 exonerate:protein2genome:local exon 196294 196393 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 196394 196395 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 196394 196458 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 196457 196458 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 196459 196569 . + . KQ414889.1 exonerate:protein2genome:local exon 196459 196569 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 196570 196571 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 196570 196651 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 196650 196651 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 196652 196807 . + . KQ414889.1 exonerate:protein2genome:local exon 196652 196807 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 196808 196809 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 196808 198579 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 198578 198579 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 198580 198627 . + . KQ414889.1 exonerate:protein2genome:local exon 198580 198627 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194109 198627 1499 + . alignment_id 1 ; Query AfOr1 ; Align 194109 1 792 ; Align 196295 266 99 ; Align 196459 299 111 ; Align 196652 336 156 ; Align 198580 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr1 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 219 Query range: 15 -> 308 Target range: 226912 -> 228205 16 : TyrLysSerAspAlaGluTyrThrValHisValAlaLysThrLeuLeuThrLeuIleG : 35 |||:!!..! !! !.!. !:!:!!!!.:!! !::: !||||||! !! !:!!| TyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuG 226913 : TATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCG : 226970 36 : lyIleTrpPro<-><->ArgArgAsnThrPheValAspAsnValLysPheTyrValGl : 52 ||||||||||| |||!:!!:!:!! :!!! !.. ! ! !!:::!!.. lyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMe 226971 : GTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGAT : 227027 53 : nIleGlyIleValPhePheLeuMetCysPheLeuLeuLeuProHisValIleTyrThr : 71 ! ! !:!! !!:! |||||| !!||| !|||:!! !! !! !:!:|||..! tGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrVal 227028 : GGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTG : 227084 72 : TyrPheAspCysGluAsnLeuThrLysTyrMetLysValIleAlaAlaGlnIlePheS : 91 !.!.!!: :!!..! ! !!!. :!!|||:!!|||!.! !!..! !|||! ValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPheP 227085 : GTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCT : 227144 92 : erLeuLeuAlaIleIleLysPheTrpThrIleIleIleAsnArgGluGluIleArgPh : 110 ! !:!!:!!:!!:!!|||!:!! ! !:!:! .!!:!!..!!!:!!:|||! ! heAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGl 227145 : TCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGA : 227201 111 : eCysLeuMetGluMetGluIleGlnTyrArgAspValGluCysGluGluAspArgSer : 129 |||:!! ..!!!::!! .!.!::!:!:!!:!!..!! ! !|||||||||!:! uCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsn 227202 : GTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAAC : 227258 130 : ValMetMetAsnThrAlaLysIleGlyArgPhePheThrIleValTyrLeuSerLeuS : 149 ||||||:!!!.. !||| ! !|||||| !!.! !! !:!!! ! !! !!!! ValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheV 227259 : GTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCG : 227318 150 : erTyrThrGlyAlaLeuProTyrHisIleIleLeuProLeuIleSerGluArgIleVa : 168 !!:!!::... ::: ::::::|||:!!:!!|||:!!! !:!!! !!!!:!!!. alPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerValAl 227319 : TCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGC : 227375 169 : lLysGluAsp<->AsnThrThrArgIleProLeuProTyrLeuSerAspTyrValPhe : 186 !! !|||||| ||| !!:! !|||! !:!!|||!:!! !! ! ! :!!.!! aThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIleIle 227376 : AACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATC : 227432 187 : PheValIleGluAspSerProIleTyrGluMetThrPheValLeuGlnIlePheIleS : 206 !! !:!!... !!||||||.!! !!|||!!: !||| !:!!|||.!! ! ! !. AlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValThrG 227433 : GCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAG : 227492 207 : erSerIleIleLeuSerThrAsnCysGlyThrTyrSerLeuIleAlaSerIleThrMe : 225 !!! !:!::!:! !.!!..!!..! !.!.!!! !|||:!! !||| !:!!.!!:! lyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaVa 227493 : GTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGT : 227549 226 : tHisCysCysGlyLeuPheGluValThrAsnArgLysIleGluThrLeuCys<-><-> : 243 :|||..!||||||! !.!.|||||| ! ! !:!:! ! !||| ! lHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGly 227550 : TCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGC : 227606 244 : LysTrpAsp<->AsnArgAsnLeuHisAspArgValIleAspIleValGlnSerHisL : 261 !:! !||| !:!!:!!..||| !!||||||:!! !..!|||||| !|||: ArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValThrHisHisV 227607 : AGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACCACG : 227666 262 : euLysAlaIle{Gl} >>>> Target Intron 1 >>>> {u}TyrSerAlaAr : 269 !!::! !:!:{.!} 396 bp {.}!:! !|||! alArgIleLeu{As}++ ++{n}PheLeuAlaLe 227667 : TTCGAATATTG{AA}gt.........................ag{C}TTTCTGGCCCT : 228086 270 : gValGlyGluSerLeuSerIleValPheLeuSerGluMetLeuGlyCysThrValIle : 288 !:!!! !:!!!!!:!!..! !:!! !!!! !|||.!.||||||||||||:!!||| uIleGluLysThrMetGlnGlnIleAlaPheValGluPheLeuGlyCysThrIleIle 228087 : CATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGTACAATAATT : 228143 289 : IleCysPheLeuGluPheGlyValIleMetGluLeuGluAspHisLysThrLeuSerT : 308 :!:|||.!!:!!|||!:! !:!!|||! !! !! ::: |||||| | LeuCysLeuIleGluTyrTyrIleIleThrValArgThrAsnLysLysThrLysLeuT 228144 : CTGTGCCTCATCGAGTATTACATCATAACGGTACGcacgaataaaaaaacaaagttaa : 228203 309 : hr : 308 || hr 228204 : CG : 228205 vulgar: AfOr1 15 308 . KQ414889.1 226912 228205 + 219 M 23 69 G 0 6 M 133 399 G 0 3 M 71 213 G 0 6 M 3 9 G 0 3 M 19 57 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226913 228205 219 + . gene_id 2 ; sequence AfOr1 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226913 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226913 227679 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228205 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228205 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226913 228205 219 + . alignment_id 2 ; Query AfOr1 ; Align 226913 16 69 ; Align 226988 39 399 ; Align 227390 172 213 ; Align 227609 243 9 ; Align 227621 246 57 ; Align 228077 266 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr1 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 191 Query range: 113 -> 264 Target range: 304410 -> 304866 114 : GluMetGluIleGlnTyrArgAspValGluCysGluGluAspArgSerValMetMetA : 133 !!::!:...! ! !|||..!.!.||||||! ! ..!||||||..!:!!|||:!:! AspLeuSerThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuL 304411 : GATCTCTCTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAA : 304468 134 : snThrAlaLysIleGlyArgPhePheThrIleValTyrLeuSerLeuSerTyrThrGl : 152 !. !!.!:!!!!:|||||| !.!.||||||:!!! ! !! !!!!! !|||||||| ysTyrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGl 304469 : AATACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGG : 304525 153 : yAlaLeuProTyrHisIleIleLeuProLeuIleSerGluArgIleValLysGluAsp : 171 |!.! ! !||||||! :!!:!!! !!!! !!!! !! ! !||| ! ||| !! yGlyThrIleTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyr 304526 : CGGCACCATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTAT : 304582 172 : AsnThrThrArgIleProLeuProTyrLeuSerAspTyrValPhePheValIleGluA : 191 ||| !|||! !! !|||||| !|||! !!!! !! !!.!!!.|||! !:!!:!! AsnArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnT 304583 : AATCGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAA : 304642 192 : spSerProIleTyrGluMetThrPheValLeuGlnIlePheIleSerSerIleIleLe : 210 |||||||||||||||:!!..!!:! !!:!!!!. !.!. !.!!! !:!!|||! hrSerProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTy 304643 : CAAGCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTA : 304699 211 : uSerThrAsnCysGlyThrTyrSerLeuIleAlaSerIleThrMetHisCysCysGly : 229 !|||! !!.!..!|||.!!! !.!!||| !||| !.!!.!!! |||..!|||||| rSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGly 304700 : TTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGA : 304756 230 : LeuPheGluValThrAsnArgLysIleGluThrLeuCys<->LysTrpAspAsnArgA : 248 ! !.!!!!::!!..!! !::!:!:! !||| ! !.. !!:::: !: GlnIleAspIleValMetSerArgLeuGlyAspLeuValAsnSerLysGluSerSerA 304757 : CAAATTGATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCATCTG : 304816 249 : snLeuHisAspArgValIleAspIleValGlnSerHisLeuLysAlaIle : 264 !!||| !! ! |||:!!|||!!:||||||:!! !||||||::! !:!! spLeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIleLeu 304817 : ATTTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTA : 304866 vulgar: AfOr1 113 264 . KQ414889.1 304410 304866 + 191 M 129 387 G 0 3 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304411 304866 191 + . gene_id 3 ; sequence AfOr1 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304411 304866 . + . KQ414889.1 exonerate:protein2genome:local exon 304411 304866 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304411 304866 191 + . alignment_id 3 ; Query AfOr1 ; Align 304411 114 387 ; Align 304801 243 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr1 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 14 -> 233 Target range: 274362 -> 275028 15 : HisTyrLysSerAspAlaGluTyrThrValHisValAlaLysThrLeuLeuThrLeuI : 34 :!!!:! ! ||| !::!!!:|||!:!:!!!!.:!! !::! !!!!|||! !! !| AsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 274363 : AATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTA : 274420 35 : leGlyIleTrpProArgArgAsn<-><->ThrPheValAspAsnValLysPheTyrVa : 51 ||||| |||||| ! !::: ||| !!!!:...:!! ! :!!:: leGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLeuSerHisLe 274421 : TAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCt : 274477 52 : lGlnIleGlyIleValPhePheLeuMetCysPheLeuLeuLeuProHisValIleTyr : 70 : ||| ::: ::!! !!!!!!: !! ! !:!!:!!||| !:!!.!!:!! uLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIlePheHis 274478 : tttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCAC : 274534 71 : ThrTyrPheAspCysGluAsnLeuThrLysTyrMetLysValIleAlaAlaGlnIleP : 90 ! ! .!.! !|||!:!||| ! ! ! :!!|||:!!:!!!.! !!! ! IleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyH 274535 : ATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTC : 274594 91 : heSerLeuLeuAlaIleIleLysPheTrpThrIleIleIleAsnArgGluGluIleAr : 109 !!!!!!!:!!!.! !|||!!.!:! |||:!::!::!!..!!!!:!!|||||||| isTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleAr 274595 : ACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACG : 274651 110 : gPheCysLeuMetGluMetGluIleGlnTyrArgAspValGluCysGluGluAspArg : 128 | !|||:!! !.!.|||:!!! !.!.!::||| !||| ! !||||||!:! gGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAspGln 274652 : CGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAA : 274708 129 : SerValMetMetAsnThrAlaLysIleGlyArgPhePheThrIleValTyrLeuSerL : 148 ..!||||||:!!!!.!.!|||||||||||||||!:! !!.!!||| !!! ! !:!!! GlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaP 274709 : CAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGT : 274768 149 : euSerTyrThrGlyAlaLeuProTyrHisIleIleLeuProLeuIleSerGluArgIl : 167 !!! ! ! !|||!.!||| !||| !:!:||| ! !!!!!! !! !:!!! !:! heMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGlnThrVa 274769 : TCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGT : 274825 168 : e<->ValLysGluAspAsnThrThrArgIleProLeuProTyrLeuSerAspTyrVal : 185 ! ||| !.!.!!:!.!! !||| ! ! !||||||! ! !:!! !! ! ! lGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLysLys 274826 : TCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAG : 274882 186 : PhePheValIleGluAspSerProIleTyrGluMetThrPheValLeuGlnIlePheI : 205 .!! !!!.!:!:!!: ||||||! !!|||!!:..!.!!!.!! !|||.!! ! IleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnPheValS 274883 : ATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGT : 274942 206 : leSerSerIleIleLeuSerThrAsnCysGlyThrTyrSerLeuIleAlaSerIleTh : 224 .!!! !|||:!: !|||!:! !|||.!!!:!|||||| !||| !.!!.! erGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAl 274943 : CGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGC : 274999 225 : rMetHisCysCysGlyLeuPheGluVal : 233 ! |||..!! !|||! !!!....||| aAlaHisAlaTyrGlyGlnLeuSerVal 275000 : GGCACACGCTTACGGCCAGTTGAGCGTG : 275028 vulgar: AfOr1 14 233 . KQ414889.1 274362 275028 + 167 M 27 81 G 0 6 M 126 378 G 0 3 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274363 275028 167 + . gene_id 4 ; sequence AfOr1 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274363 275028 . + . KQ414889.1 exonerate:protein2genome:local exon 274363 275028 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274363 275028 167 + . alignment_id 4 ; Query AfOr1 ; Align 274363 15 81 ; Align 274450 42 378 ; Align 274831 168 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr1 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 273 -> 335 Target range: 210522 -> 210774 274 : LeuSerIleValPheLeuSerGluMetLeuGlyCysThrValIleIleCysPheLeuG : 293 ||| ! :!!! |||! !||||||:!!|||||||||:!!! !!!:|||||||||! LeuHisGluIleSerLeuIleGluMetValGlyCysThrLeuAsnMetCysPheLeuG 210523 : CTGCACGAGATATCATTGATAGAAATGGTGGGGTGCACTCTGAACATGTGTTTCCTTG : 210580 294 : luPheGlyValIleMet >>>> Target Intron 1 >>>> GluLeuGluAsp : 302 !:! !..!!!:!!: 66 bp |||! !!!:..! lyTyrTyrThrMetIle++ ++GluTrpAspSer 210581 : GCTATTACACGATGATTgt.........................agGAATGGGACTCT : 210673 303 : HisLysThrLeuSerThrValThrTyrPheValLeuMetThrSerIlePheValAsnV : 322 ! ! !!:!!|||!:!:!!||||||.!.||||||:!:||||||:!! !!|||: LysAspProIleSerSerLeuThrTyrIleValLeuLeuThrSerValThrPheAsnI 210674 : AAAGACCCTATCAGCAGTCTGACGTACATAGTACTCCTCACTTCTGTCACGTTTAACA : 210733 323 : alPheIleIleSerPheIleGlyAspArgLeuLysGlnGlu : 335 !!||||||.!!!!!!:!||||||!!: !||| :!!:!: lePheIlePheCysTyrIleGlyGluValLeuAlaGluGln 210734 : TCTTCATATTCTGTTACATCGGTGAAGTGTTGGCTGAACAg : 210774 vulgar: AfOr1 273 335 . KQ414889.1 210522 210774 + 114 M 25 75 5 0 2 I 0 62 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210523 210774 114 + . gene_id 5 ; sequence AfOr1 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 210523 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210523 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210523 210774 114 + . alignment_id 5 ; Query AfOr1 ; Align 210523 274 75 ; Align 210664 299 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1536 Query range: 2 -> 412 Target range: 217099 -> 219803 3 : LysSerLysAspLysAlaAsnThrAlaAsnGlnLysPheTyrSerThrAspTyrGluT : 22 ::!!!!! !.!.||| ! ||| !!!.:!!:!!! ! !!!!||||||||||||| ArgThrMetGlnLysLeuAlaThrAsnLysGluGlnSerProArgThrAspTyrGluT 217100 : CGAACGATGCAAAAACTTGCAACAAACAAGGAACAATCCCCCAGAACCGACTACGAgt : 217157 23 : yrGlnLysAsnValAsnLeuSerIleGluTyrAsnArgTrpLeuLeuLysProMetGl : 41 ||:::||||||:::||||||||||||:!!!::|||||||||||||||||||||||||| yrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGl 217158 : acgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGG : 217214 42 : yValTrpProAsnSer<->TyrThrLeuArgSerLysAspTyrLeuTyrTrpLeuIle : 59 |:!!|||||||||||| !||| !||||||::! ! !|||||| |||||| yLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIle 217215 : TCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATA : 217271 60 : AsnIleValCysTyrSerLeuIleSerPheLeuPheIleProCysThrLeuTyrLeuP : 79 ||| !:!!||||||.!!||||||||||||||||||:!!||||||:!!:!!|||:!!| AsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyrValP 217272 : AACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGT : 217331 80 : heLeuGluIleGluAspPheTyrGlyLysLeuLysGlnPheGlyProLeuIlePheCy : 98 ||||||||:!!||||||.!!|||! !|||||||||! !|||||||||||||||||||| heLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCy 217332 : TCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTG : 217388 99 : sMetMetAlaPheValLysTyrTyrTyrLeuIleAlaHisLysThrAspIleArgGlu : 117 |:!!|||||||||||||||||||||! !||||||!.!||||||.!!|||||||||||| sValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGlu 217389 : CGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAG : 217445 118 : CysValGluArgIleLysTrpAspTrpLysAsnIleThrTyrAlaLysAspLysGluI : 137 ||||||..!||||||:!! !!||||||!:!|||:!!! !! !! !||||||!:!||| CysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArgGluA 217446 : TGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGG : 217505 138 : leMetIleThrTyrAlaAsnPheGlyArgLysLeuValValValCysThrPhePheMe : 156 ||||||..! !!||||||||||||||||||||||||:!!:!!|||||||||||||| laMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMe 217506 : CGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCAT : 217562 157 : tTyrSerGlyPheAlaPheTyrTyrIleAlaIleProIleSerValGlyArgValLys : 175 |||||||||||||...||||||||||||||||||||||||||||||||||||:!! ! tTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeu 217563 : GTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTA : 217619 176 : ThrAsp<-><->AsnLeuThrPheIleProLeuValPheProPheSerArgPheIleV : 193 :!!!!: |||||||||||||||||||||||||||||||||!!!!:!!:!|||: SerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyrIleI 217620 : TCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCA : 217679 194 : alAspThrArgTyrSerProThrAsnGluIleValPheSerIleGlnLeuMetAlaGl : 212 !!||||||||||||!!!|||||||||||||||||||||! !:!!||||||!!:||||| leAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGl 217680 : TCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGG : 217736 213 : yAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuValAlaThrPheAlaVal : 231 ||||||||||||||||||||||||||||||||||||||||!.!|||.!!||||||||| yAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaVal 217737 : AGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTT : 217793 232 : HisAlaCysGlyGlnMetGlnValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyA : 251 |||||||||||||||!!::!!||||||||||||||||||||||||||||||||||||| HisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyA 217794 : CATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTA : 217853 252 : rgLeuAspMetAspGluArgLeuAspGlyArgIleAlaAspValIleCysGlnHisVa : 270 || !||||||..!!!:! !:!!|||||||||||||||..!:!!:!! !!|||||||| rgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnHisVa 217854 : GAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGT : 217910 271 : lArgValLeu{Ly} >>>> Target Intron 1 >>>> {s}PheLeuAlaLeu : 278 ||||:!!|||{||} 1229 bp {|}||||||.!!||| lArgIleLeu{Ly}++ ++{s}PheLeuThrLeu 217911 : TCGGATATTA{AA}gt.........................ag{a}tttttgaCGCTC : 219163 279 : ThrGluLysThrLeuGlnGlnIleSerPheThrGluPheLeuGlyCysThrLeuAspI : 298 ||||||!:!|||||||||||||||||||||.!!||||||||||||||||||:!!|||| ThrGluArgThrLeuGlnGlnIleSerPheAlaGluPheLeuGlyCysThrMetAspI 219164 : ACAGAGAGAACCCTCCAGCAAATCTCTTTCGCTGAATTTCTAGGATGCACCATGGACA : 219223 299 : leCysLeuValGlyTyrTyrValIleMet >>>> Target Intron 2 >>>> : 308 ||||||||||||||||||||:!!|||:!! 76 bp leCysLeuValGlyTyrTyrIleIleVal++ ++ 219224 : TATGTCTCGTTGGATATTACATTATCGTGgt.........................ag : 219327 309 : GluSerLysSerAsnAspValThrSerValIleThrTyrValIleLeuLeuIleSerL : 327 |||!!!|||||||||||||||||||||!.!:!:||||||:!!|||||||||||||||| GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219328 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 328 : euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGlu >>> : 345 ||||||||||||||||||||||||||||||||||||||||||||||||||:!: euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln++ 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAggt... : 219442 346 : > Target Intron 3 >>>> CysArgLysIleGlyGluIleSerTyrMetIleG : 356 73 bp ||||||||||||||||||:::||||||||||||| ++CysArgLysIleGlyGluMetSerTyrMetIleG 219443 : ......................agTGtaggaaaattggagaaatgtCGTACATGATCG : 219546 357 : luTrpTyrArgLeuMetGlyAsnLysLysLeuPheCysIleLeuIleIleAlaMetSe : 375 ||||||||||||||! |||!!.|||||||||!:: !!:!!|||! !||||||||||| luTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaMetSe 219547 : AATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTATGTC : 219603 376 : rAsnSerSerIleLysLeuThrAlaGlyAsnIleValAsnLeuSerIleSerThrPhe : 394 |||||||||||||||||||||||||||||||!!:|||.!.|||||||||||||||||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPhe 219604 : GAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCACTTTT : 219660 395 : ThrAsp >>>> Target Intron 4 >>>> ValValLysThrAlaValThrTy : 404 |||||| 87 bp |||||||||||||||||||||!: ThrAsp++ ++ValValLysThrAlaValThrPh 219661 : ACCGACgt.........................agGTCGTTAAGACTGCAGTCACGTT : 219777 405 : rLeuAsnValLeuGlnLysThrThr : 412 !||||||||||||!:!! ! !||| eLeuAsnValLeuArgThrLeuThr 219778 : TCTGAATGTACTACGAACATTGACT : 219803 vulgar: AfOr20 2 412 . KQ414889.1 217099 219803 + 1536 M 44 132 G 0 3 M 131 393 G 0 6 M 96 288 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 37 111 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 83 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217100 219803 1536 + . gene_id 1 ; sequence AfOr20 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217100 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217100 217923 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219668 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219668 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219669 219670 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219669 219755 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 219754 219755 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219756 219803 . + . KQ414889.1 exonerate:protein2genome:local exon 219756 219803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217100 219803 1536 + . alignment_id 1 ; Query AfOr20 ; Align 217100 3 132 ; Align 217235 47 393 ; Align 217634 178 288 ; Align 219154 275 99 ; Align 219329 308 111 ; Align 219513 345 156 ; Align 219756 397 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1191 Query range: 2 -> 397 Target range: 212797 -> 215022 3 : LysSerLysAspLysAlaAsnThrAlaAsnGlnLysPheTyrSerThrAspTyrGluT : 22 ..!!!!! !.!.||| !!... ! !:!!:!!|||!!. ! ! !|||! ! | SerThrMetGlnLysProGlyGlyLysAspGluLysLeuGlnValGluAspCysThrT 212798 : TCGACGATGCAAAAACCGGGAGGAAAAGATGAGAAATTGCAGGTCGAAGACTGTACCT : 212855 23 : yrGlnLysAsnValAsnLeuSerIleGluTyrAsnArgTrpLeuLeuLysProMetGl : 41 ||:!!|||...||||||||||||||| !!::|||||||||||||||||||||! !|| yrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrGl 212856 : ACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGG : 212912 42 : yValTrpProAsn<->SerTyrThrLeuArgSerLysAspTyrLeuTyrTrpLeuIle : 59 |:!!||||||:!! ||||||..!! !! !! !:!! ! !!:!! ! ! |||:!! yLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIleAlaArgLeuVal 212913 : TTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTC : 212969 60 : AsnIleValCysTyrSerLeuIleSerPheLeuPheIleProCysThrLeuTyrLeuP : 79 |||! !|||||||||.!!||||||.!!!:!||| ! |||||||||!:!||||||:!!| AsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrValP 212970 : AATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGT : 213029 80 : heLeuGluIleGluAspPheTyrGlyLysLeuLysGlnPheGlyProLeuIlePheCy : 98 |||||!!::!!|||:::...::: ::::!!:!! !|||||| !!!! !||||| heLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheCy 213030 : TCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTG : 213086 99 : sMetMetAlaPheValLysTyrTyrTyrLeuIleAlaHisLysThrAspIleArgGlu : 117 |:!! |||.!. !||||||:!!! |||||| !||| !||||||||| ! sValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgThr 213087 : CGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTACG : 213143 118 : CysValGluArgIleLysTrpAspTrpLysAsnIleThrTyrAlaLysAspLysGluI : 137 |||||||||!.!!!:|||!::||||||||||||||||||:!!! !:!!|||||||||| CysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGluI 213144 : TGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAA : 213203 138 : leMetIleThrTyrAlaAsnPheGlyArgLysLeuValValValCysThrPhePheMe : 156 ||||| ! !!|||!:!||||||!:!!:!:!!|||..!:!!|||.!!|||||||| leMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPhePheMe 213204 : TTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCAT : 213260 157 : tTyrSerGlyPheAlaPheTyrTyrIleAlaIleProIleSerValGlyArgValLys : 175 ||||!!!||||||.!!||||||!:!:!!!.!:!!|||||||||!.!! !!:!:!! ! tTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLysMetVal 213261 : GTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTA : 213317 176 : ThrAsp<-><->AsnLeuThrPheIleProLeuValPheProPheSerArgPheIleV : 193 .!!!!: |||:!!||||||! !! !:!!||| !!||| !!||||||||||||| AlaGluAspLeuAsnValThrPheArgGlnMetValValProValSerArgPheIleV 213318 : GCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCG : 213377 194 : alAspThrArgTyrSerProThrAsnGluIleValPheSerIleGlnLeuMetAlaGl : 212 |||||..!||||||||||||..!||||||||| !!|||! !||||||:!!!!:||||| alAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleIleAlaGl 213378 : TCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGG : 213434 213 : yAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuValAlaThrPheAlaVal : 231 |!.!|||!!:|||!.!|||.!! !!.!||||||||||||!.!|||..!||||||||| yValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPheAlaVal 213435 : AGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTT : 213491 232 : HisAlaCysGlyGlnMetGlnValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyA : 251 |||||||||||||||||| :!!||||||!:!||||||:!!|||||||||||||||| HisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGlyA 213492 : CACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGTA : 213551 252 : rgLeuAspMetAspGluArgLeuAspGlyArgIleAlaAspValIleCysGlnHisVa : 270 || !||||||..!:!!!.!:!!|||! !|||||||||! !:!!:!: !|||||||| rgGluAspMetSerLysAsnValAspAspArgIleAlaValIleValAsnGlnHisVa 213552 : GAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATGT : 213608 271 : lArgValLeu{Ly} >>>> Target Intron 1 >>>> {s}PheLeuAlaLeu : 278 ||||:!!|||{||} 840 bp {|}||||||! !||| lArgIleLeu{Ly}++ ++{s}PheLeuGluLeu 213609 : GCGGATACTG{AA}gt.........................ag{A}TTCTTAGAGCTC : 214472 279 : ThrGluLysThrLeuGlnGlnIleSerPheThrGluPheLeuGlyCysThrLeuAspI : 298 ..!||||||.!!|||!:!|||:!!||||||.!!|||!!.|||! !||||||:!!:!!: ValGluLysAlaLeuArgGlnValSerPheAlaGluLeuLeuValCysThrValAsnL 214473 : GTGGAGAAAGCACTTCGGCAAGTATCTTTCGCTGAATTATTAGTATGCACGGTGAATC : 214532 299 : leCysLeuValGlyTyrTyrValIleMet >>>> Target Intron 2 >>>> : 308 !!||||||||||||||||||:!!|||! ! 68 bp euCysLeuValGlyTyrTyrIleIleThr++ ++ 214533 : TCTGTCTCGTTGGATATTACATAATAACGgt.........................ag : 214628 309 : GluSerLysSerAsnAspValThrSerValIleThrTyrValIleLeuLeuIleSerL : 327 |||!!!!!.||||||:!!:!!|||!!!..!:!!|||||||||:!:|||! !||||||| GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValValLeuTyrIleSerL 214629 : gAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGGTGTTGTATATCTCTC : 214687 328 : euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGlu >>> : 345 ||||||||||||||||||||||||||||||||||||||:!!|||:!!|||:!! euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValSerGluGln++ 214688 : tcactttcaatattttcatattttgttaCATAGGCGAGCTTGTGTCTGAACAGgt... : 214743 346 : > Target Intron 3 >>>> CysArgLysIleGlyGluIleSerTyrMetIleG : 356 123 bp |||!:!|||:!!||||||:!!||||||||||||| ++CysLysLysValGlyGluValSerTyrMetIleG 214744 : ......................agTGCAAAAAGGTCGGAGAAGTATCGTACATGATCG : 214897 357 : luTrpTyrArgLeuMetGlyAsnLysLysLeuPheCysIleLeuIleIleAlaMetSe : 375 |||||||||||||| |||||||||||||||! !||||||||||||!!:|||||||| luTrpTyrArgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSe 214898 : AATGGTACCGATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTC : 214954 376 : rAsnSerSerIleLysLeuThrAlaGlyAsnIleValAsnLeuSerIleSerThrPhe : 394 ||||||||||:!!|||!!!||||||||||||!!:|||.!.|||||||||||||||||| rAsnSerSerValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPhe 214955 : CAATTCATCCGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTC : 215011 395 : ThrAspVal : 397 !:!..!||| SerSerVal 215012 : AGCAGTGTA : 215022 vulgar: AfOr20 2 397 . KQ414889.1 212797 215022 + 1191 M 43 129 G 0 3 M 132 396 G 0 6 M 96 288 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 M 33 99 5 0 2 I 0 64 3 0 2 M 37 111 5 0 2 I 0 119 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212798 215022 1191 + . gene_id 2 ; sequence AfOr20 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212798 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 212798 213621 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212798 215022 1191 + . alignment_id 2 ; Query AfOr20 ; Align 212798 3 129 ; Align 212930 46 396 ; Align 213332 178 288 ; Align 214463 275 99 ; Align 214630 308 111 ; Align 214864 345 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1177 Query range: 1 -> 406 Target range: 226852 -> 230433 2 : GlnLysSerLysAspLysAlaAsnThrAlaAsnGlnLysPheTyrSerThrAspTyrG : 21 !:::!!!!!! ! ! ||| !...:!!||||||! !! ! !:!!|||!!: !!! ArgGluThrMetLysLysGlnArgSerAlaAsnLeuAlaSerLeuAlaThrGluAsnA 226853 : CGTGAAACCATGAAAAAACAGCGATCGGCGAACCTCGCGTCTCTCGCGACAGAGAACG : 226910 22 : luTyrGlnLysAsnValAsnLeuSerIleGluTyrAsnArgTrpLeuLeuLysProMe : 40 !:||||||:!! !!:!!||||||||||||:!!! |||||||||||||||||||||:! spTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLe 226911 : ACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACT : 226967 41 : tGlyValTrpProAsnSer<->TyrThrLeuArgSerLysAspTyrLeuTyrTrpLeu : 58 :|||:!!||||||:::||| ! !:!! !|||! ! ! ! !!!!! !|||||| uGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLeu 226968 : CGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTG : 227024 59 : IleAsnIleValCysTyrSerLeuIleSerPheLeuPheIleProCysThrLeuTyrL : 78 !!:..!.!!:!!||||||:!!|||!!:|||||| !!!.:!! !! !! !||||||: MetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrV 227025 : ATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACG : 227084 79 : euPheLeuGluIleGluAspPheTyrGlyLysLeuLysGlnPheGlyProLeuIlePh : 97 !! !!||||||:!::!!! ! !|||..!! !||||||..!.!!||||||:!! !|| alValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPh 227085 : TGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTT : 227141 98 : eCysMetMetAlaPheValLysTyrTyrTyrLeuIleAlaHisLysThrAspIleArg : 116 |! ! !|||:!!.!!:!!||||||! ! |||! !|||:!! !||||||! ! ePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLeu 227142 : CTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTC : 227198 117 : GluCysValGluArgIleLysTrpAspTrpLysAsnIleThrTyrAlaLysAspLysG : 136 |||||||||||||||||||||||||||||||||||||||! !||| !:!!|||!:!. GluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgA 227199 : GAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAA : 227258 137 : luIleMetIleThrTyrAlaAsnPheGlyArgLysLeuValValValCysThrPhePh : 155 !.:!:|||:!:||||||||| !!!:!||||||||||||:!!..!:!!||||||||||| snValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePh 227259 : ACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTT : 227315 156 : eMetTyrSerGlyPheAlaPheTyrTyrIleAlaIleProIleSerValGlyArgVal : 174 |:!:!:!|||...|||...|||:::||||||!.!:!!||||||!:!!.!|||!!!||| eValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerVal 227316 : CGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTT : 227372 175 : LysThrAsp<-><->AsnLeuThrPheIleProLeuValPheProPheSerArgPheI : 192 !|||!!: |||! !!:!!:!|||! !:!! !||||||||| !!!:!.!!| AlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIleI 227373 : GCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCA : 227432 193 : leValAspThrArgTyrSerProThrAsnGluIleValPheSerIleGlnLeuMetAl : 211 ||!.!|||..!|||||||||||| !||||||||| !!||||||:!!|||!!!:!:.! leAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValTh 227433 : TCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAAC : 227489 212 : aGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuValAlaThrPheAla : 230 !||| !:!!:!!||||||:!!||||||||||||||||||:!!!.!||| !.!!||| rGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAla 227490 : AGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCG : 227546 231 : ValHisAlaCysGlyGlnMetGlnValLeuMetAsnTrpLeuGlnHisLeuIleAspG : 250 |||||||||||||||||||||:!!||||||:!!::!|||||| !||||||||||||| ValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAspG 227547 : GTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACG : 227606 251 : lyArgLeuAspMetAspGluArgLeuAspGlyArgIleAlaAspValIleCysGlnHi : 269 ||||| !||||||..!:!!! !||||||! !|||||||||..!:!!:!! !!!.|| lyArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValThrHisHi 227607 : GCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACCA : 227663 270 : sValArgValLeu{Ly} >>>> Target Intron 1 >>>> {s}PheLeuAla : 277 |||||||:!!|||{!!} 396 bp {.}||||||||| sValArgIleLeu{As}++ ++{n}PheLeuAla 227664 : CGTTCGAATATTG{AA}gt.........................ag{C}TTTCTGGCC : 228083 278 : LeuThrGluLysThrLeuGlnGlnIleSerPheThrGluPheLeuGlyCysThrLeuA : 297 |||! !|||||||||:!!|||||||||:!!|||..!||||||||||||||||||:!! LeuIleGluLysThrMetGlnGlnIleAlaPheValGluPheLeuGlyCysThrIleI 228084 : CTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGTACAATAA : 228143 298 : spIleCysLeuValGlyTyrTyrValIleMet >>>> Target Intron 2 >>> : 308 !:!:||||||:!!! !||||||:!!|||! ! 72 bp leLeuCysLeuIleGluTyrTyrIleIleThr++ 228144 : TTCTGTGCCTCATCGAGTATTACATCATAACGgt........................ : 228178 309 : > GluSerLysSerAsnAspValThrSerValIleThrTyrValIleLeuLeuIleS : 326 |||!!!!!. !!!!.!!::!!|||! !!.!:!!|||||| ! ||||||:!!| ++GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuS 228179 : .agGAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTAT : 228302 327 : erLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGlu : 345 ||!!!||||||||||||||||||||||||||||||||||||||||||||||||.!. erPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluHis++ 228303 : CCTTTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACgt : 228359 346 : >>>> Target Intron 3 >>>> CysArgLysIleGlyGluIleSerTyrMetI : 355 1889 bp |||||||||:!!||||||! |||||||||| ++CysArgLysValGlyGluLysSerTyrMetI 228360 : .........................agTGCAGAAAAGTCGGCGAAAAGTCGTACATGA : 230278 356 : leGluTrpTyrArgLeuMetGlyAsnLysLysLeuPheCysIleLeuIleIleAlaMe : 374 |||||||||||||||||! |||||||||||||||! !|||||||||||||||||||| leGluTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMe 230279 : TCGAATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCAT : 230335 375 : tSerAsnSerSerIleLysLeuThrAlaGlyAsnIleValAsnLeuSerIleSerThr : 393 |||||||!!!|||! |||!!!||||||||||||!!:|||.!.||||||:!!!:!||| tSerAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnThr 230336 : GTCCAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACACT : 230392 394 : PheThrAspValValLysThrAlaValThrTyrLeuAsn : 406 |||!:!|||||| !! ! ! ! !..!||| !||| PheSerAspValSerIleIlePheSerValTyrThrAsn 230393 : TTCAGCGACGTAAGTATCATATTCTCTGTTTACACGAAT : 230433 vulgar: AfOr20 1 406 . KQ414889.1 226852 230433 + 1177 M 45 135 G 0 3 M 131 393 G 0 6 M 96 288 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226853 230433 1177 + . gene_id 3 ; sequence AfOr20 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226853 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226853 227679 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226853 230433 1177 + . alignment_id 3 ; Query AfOr20 ; Align 226853 2 135 ; Align 226991 47 393 ; Align 227390 178 288 ; Align 228077 275 99 ; Align 228248 308 111 ; Align 230248 345 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 972 Query range: 17 -> 276 Target range: 221348 -> 222134 18 : ThrAspTyrGluTyrGlnLysAsnValAsnLeuSerIleGluTyrAsnArgTrpLeuL : 37 ..!!!:|||!!:|||:!!! !||||||!!.||||||:!::!!! !:!||||||:!!| ValGluTyrAspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleL 221349 : GTTGAATACGATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCT : 221406 38 : euLysProMetGlyValTrpProAsnSerTyrThrLeuArgSerLysAsp<->TyrLe : 55 ||||||||!!:|||||||||||||||||| !!.!:!! !!!! !!!: ||||| euLysProIleGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLe 221407 : TGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCT : 221463 56 : uTyrTrpLeuIleAsnIleValCysTyrSerLeuIleSerPheLeuPheIleProCys : 74 ||||||||||||||||:!!||||||||||||||||||!!!||||||!!.:!!|||||| uTyrTrpLeuIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCys 221464 : CTACTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGC : 221520 75 : ThrLeuTyrLeuPheLeuGluIleGluAspPheTyrGlyLysLeuLysGlnPheGlyP : 94 !:!||||||:!!.!!||||||:!!|||||| !!|||..!!:!:!!||| !!!.|||| SerLeuTyrValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyP 221521 : AGCCTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTC : 221580 95 : roLeuIlePheCysMetMetAlaPheValLysTyrTyrTyrLeuIleAlaHisLysTh : 113 |||||! !||||||:!!|||||||||:!!||||||:!! |||||| !:!!:!!!. roLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAs 221581 : CGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAA : 221637 114 : rAspIleArgGluCysValGluArgIleLysTrpAspTrpLysAsnIleThrTyrAla : 132 !|||||||||||||||:!!|||||||||:!!||||||||||||||||||||||||:!! nAspIleArgGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSer 221638 : CGACATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCC : 221694 133 : LysAspLysGluIleMetIleThrTyrAlaAsnPheGlyArgLysLeuValValValC : 152 |||||||||!!:||||||||| ! !!|||! !|||||||||::!|||:!!:!!:!!| LysAspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleC 221695 : AAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCT : 221754 153 : ysThrPhePheMetTyrSerGlyPheAlaPheTyrTyrIleAlaIleProIleSerVa : 171 ||||||||||||||||||||||||||...|||||||||||||||||||||.!!||||| ysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerVa 221755 : GCACATTTTTCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGT : 221811 172 : lGlyArgValLysThrAsp<-><->AsnLeuThrPheIleProLeuValPheProPhe : 188 ||||!:!:!! .!!.!. |||:::||||||||||||:!!|||||||||||| lGlyLysIleProAlaGlnAspValAsnValThrPheIleProMetValPheProPhe 221812 : GGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTC : 221868 189 : SerArgPheIleValAspThrArgTyrSerProThrAsnGluIleValPheSerIleG : 208 |||||||||||||||||||||||||||||||||..!|||||||||:!!||||||:!!| SerArgPheIleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuG 221869 : TCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTC : 221928 209 : lnLeuMetAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuValAl : 227 ||:!!|||||||||||||||||||||.!!||||||||||||||||||||||||||||| lnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAl 221929 : AAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGC : 221985 228 : aThrPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetAsnTrpLeuGlnHis : 246 |! !|||||||||||||||||||||||||||||||||||||||!:!||||||:!!||| aMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHis 221986 : TATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACAT : 222042 247 : LeuIleAspGlyArgLeuAspMetAspGluArgLeuAspGlyArgIleAlaAspValI : 266 ||||||:!!|||||| !|||||| !.!.!.!:!!||| !!||||||||| ! :!!: LeuIleAsnGlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleV 222043 : TTGATCAACGGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTG : 222102 267 : leCysGlnHisValArgValLeuLysPheLeu : 276 !: !||||||||||||:!!|||:!!!:!:!! alAsnGlnHisValArgIleLeuGlnTyrVal 222103 : TGAATCAACACGTTCGAATATTGCAGTATGTA : 222134 vulgar: AfOr20 17 276 . KQ414889.1 221348 222134 + 972 M 36 108 G 0 3 M 124 372 G 0 6 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221349 222134 972 + . gene_id 4 ; sequence AfOr20 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221349 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221349 222134 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221349 222134 972 + . alignment_id 4 ; Query AfOr20 ; Align 221349 18 108 ; Align 221460 54 372 ; Align 221838 178 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 957 Query range: 20 -> 412 Target range: 208191 -> 212081 21 : GluTyrGlnLysAsnValAsnLeuSerIleGluTyrAsnArgTrpLeuLeuLysProM : 40 .!.|||:!!!!.:!!:!!!:!!!!!:!:!!... ||| !||| !|||||| !! AsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuLysIleI 208192 : AACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGAAGATAA : 208249 41 : etGlyValTrpProAsnSerTyrThrLeuArg<->SerLysAspTyrLeuTyrTrpLe : 58 !:||| !||||||!..||| !! ! ! ! !:!!:!! !! !:!! || leGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHisIleLe 208250 : TCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCATATTCT : 208306 59 : uIleAsnIleValCysTyrSerLeuIleSerPheLeuPheIleProCysThrLeuTyr : 77 |:!!|||:!!:!! !!:!!!!!|||:!!.!!|||:!! ! |||||| ! !:!!!:! uLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGlyMetPhe 208307 : CTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATGTTC : 208363 78 : LeuPheLeuGluIleGluAspPheTyrGlyLysLeuLysGlnPheGlyProLeuIleP : 97 !.!!|||! !:!!||||||||||||! !:!!|||||| ! !.!! !!|||! !| AlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaLeuSerP 208364 : GCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTCTGAGCT : 208423 98 : heCysMetMetAlaPheValLysTyrTyrTyrLeuIleAlaHisLysThrAspIleAr : 116 ||! !||||||||||||..!|||||| !:!!! !!.!!.!:!! !|||||||| hePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAspIleAr 208424 : TCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGACATACG : 208480 117 : gGluCysValGluArgIleLysTrpAspTrpLysAsnIleThrTyrAlaLysAspLys : 135 |:!!||||||||| !:!!:!! ||||||!:!|||:!: !:!!! !:!!|||!:! gLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGluAspArg 208481 : GAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAGGACAGG : 208537 136 : GluIleMetIleThrTyrAlaAsnPheGlyArgLysLeuValValValCysThrPheP : 155 :!!||||||:!: ! !!|||!:!|||!.!|||||||||:!!|||:!!||| ! !| LysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysGlyAlaP 208538 : AAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCGGAGCTT : 208597 156 : heMetTyrSerGlyPheAlaPheTyrTyrIleAlaIleProIleSerValGlyArgVa : 174 ||||||||.!!||| |||||||||||||||:!:|||:!!!!! !! !!:!|| heMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAspLysVa 208598 : TCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGACAAGGT : 208654 175 : lLysThrAsp<-><->AsnLeuThrPheIleProLeuValPheProPheSerArgPhe : 191 | !!!: |||||||||!:!! ! !||||||!:!||| !! !!!:!||| lValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValProLysPhe 208655 : CGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCTAAGTTC : 208711 192 : IleValAspThrArgTyrSerProThrAsnGluIleValPheSerIleGlnLeuMetA : 211 |||:!!|||..!||||||||||||..!||||||||| !!!:!!!!:!!||||||:!!: IleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnLeuLeuS 208712 : ATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAATTGTTGT : 208771 212 : laGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuValAlaThrPheAl : 230 !!||| !:!! |||..!|||||| !!.!||||||.!!|||!.!||| !.!!|| erGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLeuLeuAl 208772 : CGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCTGCTCGC : 208828 231 : aValHisAlaCysGlyGlnMetGlnValLeuMetAsnTrpLeuGlnHisLeuIleAsp : 249 |:!!|||||||||||||||:!!|||:!!||||||::!|||:!!:!! ! |||:!!||| aMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeuValAsp 208829 : GATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTGGTCGAT : 208885 250 : GlyArgLeuAspMetAspGluArgLeuAspGlyArgIleAlaAspValIleCysGlnH : 269 |||||| !||| !!!::!!!.!|||||| !|||:!:|||:!!:!!:!: |||| GlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleValGluGlnH 208886 : GGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCGTGGAGCAGC : 208945 270 : isValArgValLeu{Ly} >>>> Target Intron 1 >>>> {s}PheLeuAl : 277 |||||||||||:!!{!!} 1536 bp {.}|||:!!|| isValArgValIle{As}++ ++{n}PheIleAl 208946 : ATGTTCGAGTGATC{AA}gt.........................ag{T}TTTATAGC : 210505 278 : aLeuThrGluLysThrLeuGlnGlnIleSerPheThrGluPheLeuGlyCysThrLeu : 296 ||||||||||!!. !|||!!.:!!||||||!!.! !|||.!.:!!|||||||||||| aLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGluMetValGlyCysThrLeu 210506 : TCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAATGGTGGGGTGCACTCTG : 210562 297 : AspIleCysLeuValGlyTyrTyrValIleMet >>>> Target Intron 2 >> : 308 :!!!!:|||!!!:!!|||||||||..!!!:!!: 66 bp AsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210563 : AACATGTGTTTCCTTGGCTATTACACGATGATTgt....................... : 210600 309 : >> GluSerLysSerAsnAspValThrSerValIleThrTyrValIleLeuLeuIle : 325 |||!!! ! |||!!.||| !! !||| !:!:||||||:!!:!!||||||! ! ++GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValLeuLeuThr 210601 : ..agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTACTCCTCACT : 210715 326 : SerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGlu : 345 |||:!!||||||||||||||||||||||||||||||||||||:!::!!||||||:!: SerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAlaGluGln+ 210716 : TCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGCTGAACAgg : 210775 346 : >>>> Target Intron 3 >>>> CysArgLysIleGlyGluIleSerTyrMet : 354 999 bp !|||:!!||||||! ||||||||| + ++ThrValLysValGlyGluLysSerTyrMet 210776 : t.........................agACAGTAAAAGTTGGAGAAAAGTCTTACATG : 211801 355 : IleGluTrpTyrArgLeuMetGlyAsnLysLysLeuPheCysIleLeuIleIleAlaM : 374 |||!!:|||||||||:!! |||!!.||| ||| !! !|||!!:|||:!!| IleAspTrpTyrArgMetProGlyLysLysGlyLeuValValProLeuMetIleSerM 211802 : ATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGATGATCTCCA : 211861 375 : etSerAsnSerSerIleLysLeuThrAlaGlyAsnIleValAsnLeuSerIleSerTh : 393 |||||:!!|||!!!! !|||:!!||||||||||||:!!:!! !||||||||||||!: etSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleValLeuSerIleSerSe 211862 : TGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTTCTTTCAATCAGTAG : 211918 394 : rPheThrAsp >>>> Target Intron 4 >>>> ValValLysThrAlaValT : 403 !||| !||| 104 bp |||:!!||||||:!!|||| rPheGlyAsp++ ++ValIleLysThrSerValT 211919 : TTTCGGTGACgt.........................agGTTATCAAGACTTCGGTAA : 212052 404 : hrTyrLeuAsnValLeuGlnLysThrThr : 412 |||||||||||:!!|||!:!! ! !||| hrTyrLeuAsnMetLeuArgThrPheThr 212053 : CATACTTGAACATGCTACGAACATTCACA : 212081 vulgar: AfOr20 20 412 . KQ414889.1 208191 212081 + 957 M 30 90 G 0 3 M 127 381 G 0 6 M 96 288 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 995 3 0 2 M 52 156 5 0 2 I 0 100 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208192 212081 957 + . gene_id 5 ; sequence AfOr20 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208192 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208192 208961 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211929 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 211930 211931 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 211930 212033 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 212032 212033 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 212034 212081 . + . KQ414889.1 exonerate:protein2genome:local exon 212034 212081 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208192 212081 957 + . alignment_id 5 ; Query AfOr20 ; Align 208192 21 90 ; Align 208285 51 381 ; Align 208672 178 288 ; Align 210499 275 99 ; Align 210664 308 111 ; Align 211774 345 156 ; Align 212034 397 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 581 Query range: 16 -> 407 Target range: 284490 -> 287252 17 : SerThrAspTyrGluTyrGlnLysAsnValAsnLeuSerIleGluTyrAsnArgTrpL : 36 |||||||||! !!::.!.! !:!! !! ! !|||:!!:!! |||||||||! SerThrAspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpP 284491 : TCAACCGATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGT : 284548 37 : euLeuLysProMetGlyValTrpProAsnSerTyrThrLeuArgSerLysAspTyrLe : 55 !!|||||||||!!:|||||||||||| !||| ! !:!!! !!!! !!!: ! :! heLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIl 284549 : TTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGAT : 284605 56 : uTyrTrpLeuIle<->AsnIleValCysTyrSerLeuIleSerPheLeuPheIlePro : 73 ! !! :!!:!! :!!:!! !!! !! !||||||.!!||||||!!.:!!||| eSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValPro 284606 : CAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCG : 284662 74 : CysThrLeuTyrLeuPheLeuGlu<->IleGluAspPheTyrGlyLysLeuLysGlnP : 92 |||.!!|||! ! ! ! |||!!: ! !! |||.!! !! !|||:!!|||..!. CysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetI 284663 : TGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGA : 284722 93 : heGlyProLeuIlePheCysMetMetAlaPheValLysTyrTyrTyrLeuIleAlaHi : 111 !!|||||||||! !||||||||||||||| :!!||||||||| !||||||:!!!. leGlyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerAr 284723 : TCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCG : 284779 112 : sLysThrAspIleArgGluCysValGluArgIleLysTrpAsp{Tr} >>>> Targ : 126 ! ! ! ||| !!:!!||||||:!! !|||::: !|||{||} gGlyGlyLysIleGlyGlnCysValLysAspIleArgAlaAsp{Tr}++ 284780 : CGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGAC{TG}gt......... : 284828 127 : et Intron 1 >>>> {p}LysAsnIleThrTyrAlaLysAspLysGluIleMetI : 139 1012 bp {|} ::: !!:: :::::::::|||||||||! +-{p}LeuSerHisSerGlnGluGluGluArgGluIleMetA 284829 : ................ac{G}CTTTCGCATAGtcaagaagaggagagagagatcaTGA : 285875 140 : leThrTyrAlaAsnPheGlyArgLysLeuValValValCysThrPhePheMetTyrSe : 158 ! !|||!...!!||||||...|||!.!:!! !!|||.!! !||||||||||| rgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSe 285876 : GGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTC : 285932 159 : rGlyPheAlaPheTyrTyrIleAlaIleProIleSerValGlyArgValLys<->Thr : 176 |||| !|||||| !! !.!!!:|||:!:!!!..!! !|||..!:!! ! ! rGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIle 285933 : CGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCATC : 285989 177 : AspAsnLeuThrPheIleProLeuValPheProPheSerArgPheIleValAspThrA : 196 |||||| !||| ! ! ! !!! !!.!||||||.!!! !||| !:!!:!!||| !!| AspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProA 285990 : GACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGC : 286049 197 : rgTyrSerProThrAsnGluIleValPheSerIleGlnLeuMetAlaGlyAlaLeuMe : 215 || !||||||:!! !||||||||| ! !!!:|||! !:!!|||!.! !:!!!! rgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIl 286050 : GTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTAT : 286106 216 : tHisGlyIleThrSerAlaAlaCysSerLeuValAlaThrPheAlaValHisAlaCys : 234 ::!!..!:!!||| !!.!||||||||||||!.!|||..!|||!.!:!!|||!.!||| eTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCys 286107 : ATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGT : 286163 235 : GlyGlnMetGlnValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgLeuAspM : 254 ||||||.!.::!:!!|||:!!!.. !|||.!. ! |||:!!|||||| ! !! ! GlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLysGlyA 286164 : GGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGA : 286223 255 : etAsp<-><->GluArgLeuAspGlyArgIleAlaAspValIleCysGlnHisValAr : 271 ! ! ...! !! !!!: !|||:!:!.!|||:!!||| !!.|||:!!!: rgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLy 286224 : GGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAA : 286280 272 : gValLeu{Ly} >>>> Target Intron 2 >>>> {s}PheLeuAlaLeuThr : 279 !:!!|||{ } 491 bp {!}.!.||| !!!||| sIleLeu{Gl}++ -+{y}IleLeu---PheThr 286281 : GATACTG{GG}gt.........................gg{G}ATATTA---TTTACT : 286792 280 : GluLysThrLeuGlnGlnIleSerPheThrGluPheLeuGlyCysThrLeuAspIleC : 299 !!: !.! !.!..!.:!:!!!!:! !.!. !:!! !...! !:!!! .!! AspGlyAsnArgAspAspLeuCysTyrTyrHisThrValMetAlaIleIleAlaPheV 286793 : GACGGTAACAGAGACGACTTGTGTTATTACCATACTGTAATGGCAATAATTGCATTCG : 286852 300 : ysLeuValGlyTyrTyrValIleMetGluSerLysSerAsnAspValThrSerValIl : 318 !:!! !..!! ! |||.!! !|||!!!:!!..!!:!!!:..!! !.!!..!|| alMetTyrSerLeuSerValPhe***GluTrpGluGlnSerGluThrIleGlyThrIl 286853 : TCATGTACTCGTTGTCAGTTTTCTAGGAATGGGAGCAAAGTGAAACTATAGGAACGAT : 286909 319 : eThrTyrValIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIle : 337 ||||||| !! ||||||:!!|||!!!|||||||||:!!||||||.!!||||||||| eThrTyrCysThrLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIle 286910 : CACGTATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATC : 286966 338 : GlyGluIleValAlaGluGlu >>>> Target Intron 3 >>>> CysArgLy : 347 |||||||||:!!:!!|||::: 74 bp ||| !|| GlyGluIleLeuSerGluGln++ ++CysLeuLy 286967 : GGTGAAATTCTCTCCGAACaggt.........................agtGCTTAAA : 287070 348 : sIleGlyGluIleSerTyrMetIleGluTrpTyrArgLeuMetGlyAsnLysLysLeu : 366 |:!!||| ! !!!!|||||||||!!:|||||||||||| |||!!.! ! ! ! sValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGln 287071 : AGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAA : 287127 367 : PheCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnI : 386 !! |||||||||.!!|||:!!||||||||||||||||||||||||||||||!!.| GlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysI 287128 : GGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGA : 287187 387 : leValAsnLeuSerIleSerThrPheThrAspValValLysThrAlaValThrTyrLe : 405 ||:!!:!!||||||:!!|||!:!||| !..!||| !! ! ! !:!!:!!|||! leIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyrTy 287188 : TCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTA : 287244 406 : uAsnVal : 407 !:!!:!! rHisLeu 287245 : TCATTTG : 287252 vulgar: AfOr20 16 407 . KQ414889.1 284490 287252 + 581 M 43 129 G 0 3 M 22 66 G 0 3 M 44 132 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 49 147 G 0 3 M 80 240 G 0 6 M 18 54 S 0 2 5 0 2 I 0 487 3 0 2 S 1 1 M 2 6 G 1 0 M 67 201 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284491 287252 581 + . gene_id 6 ; sequence AfOr20 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284491 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284491 284825 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286781 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286780 286781 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 286782 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286782 286989 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284491 287252 581 + . alignment_id 6 ; Query AfOr20 ; Align 284491 17 129 ; Align 284623 60 66 ; Align 284692 82 132 ; Align 285839 127 147 ; Align 285989 176 240 ; Align 286235 256 54 ; Align 286783 275 6 ; Align 286789 278 201 ; Align 287064 345 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 544 Query range: 9 -> 348 Target range: 259718 -> 261856 10 : ThrAlaAsnGlnLysPheTyrSerThrAspTyrGluTyrGlnLysAsnValAsnLeuS : 29 ||| !!...!.|||! ! !..!!!: ...!:! !..:!! !:!!! !| ThrMetThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrS 259719 : ACGATGACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATA : 259776 30 : erIleGluTyrAsnArgTrpLeuLeuLysProMetGlyValTrp<->ProAsnSerTy : 47 ||:!!:!!!:!|||||||||!!!|||||||||!!:|||!.!||| |||:::|||! erLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSe 259777 : GCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTC : 259833 48 : rThrLeuArgSerLysAspTyrLeuTyrTrpLeuIleAsnIleValCysTyrSerLeu : 66 !||| !||| !:!! ! !:!!! ! :!!:!:! !.!!:!!||||||||| ! rThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThr 259834 : CACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACC : 259890 67 : IleSerPheLeuPheIleProCysThrLeuTyrLeuPheLeuGluIleGluAspPheT : 86 ||| ! !! !.!.|||||||||..!|||:!!:!!.!.||||||! |||..!!!.| IleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuT 259891 : ATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGT : 259950 87 : yrGlyLysLeuLysGlnPheGlyProLeuIlePheCysMetMetAlaPheValLysTy : 105 || !||| !||| !.!!|||||||||! ! !!! .!.:!:!.!! !:!!!!.|| yrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTy 259951 : ACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTA : 260007 106 : rTyrTyrLeuIleAlaHisLysThrAspIleArgGluCysValGluArgIleLysTrp : 124 | |||:!: !... ! !||||||! !...|||||||||!.!:!::!! rThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsn 260008 : CACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAAC : 260064 125 : AspTrpLysAsnIleThrTyrAlaLysAspLysGluIleMetIleThrTyrAlaAsnP : 144 ||||||!:!! !|||||| ! !||||||:!!.!.:!:|||:!:! !||||||!!.| AspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysP 260065 : GATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAAT : 260124 145 : heGlyArgLysLeuValValValCysThrPhePheMetTyrSerGlyPheAlaPheTy : 163 |||||||| ! :!!!.!!.! !|||.!! !|||:!! ! .!!||| !! !! !!: heGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPh 260125 : TCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTT : 260181 164 : rTyrIleAlaIleProIleSerValGlyArgValLysThrAspAsnLeuThrPheIle : 182 !! !:!:!.!! !:!:|||..!! ! !:!!:!!..!! ||| !||| ||| eCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIle 260182 : CTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATC : 260238 183 : ProLeuValPheProPheSerArgPhe<-><->IleValAspThrArgTyrSerProT : 200 !! !:!!!!.|||! !:!! !!:! :!::!!:!!..!!.! !!||||||! ValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProM 260239 : GTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTA : 260298 201 : hrAsnGluIleValPheSerIleGlnLeuMetAlaGlyAlaLeuMetHisGlyIleTh : 219 !||||||||||||.!! !:!:|||!!!:!::!!||| !:!!:!!:!!..!! !|| etAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerTh 260299 : TGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCAC : 260355 220 : rSerAlaAlaCysSerLeuValAlaThrPheAlaValHisAlaCysGlyGlnMetGln : 238 | !!.! !! !||||||!.!|||..!.!..!!!.!|||||||||||||||:!!.!. rValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsn 260356 : CGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAAC : 260412 239 : ValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgLeuAspMetAspGluArgL : 258 |||||||||.!.|||:!! !.!.!!!:!:|||! ! ! !:!!! ! ! :!!!:! ValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysA 260413 : GTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGG : 260472 259 : euAspGlyArgIleAlaAspValIleCysGlnHisVal{Ar} >>>> Target In : 271 ! ! !!:! !! |||||| !:!!||| !{ } 260 laProPheLysGluIleGlyValIleValGluHisHis{Le}+- 260473 : CTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCAT{TT}ga.............. : 260515 272 : tron 1 >>>> {g}ValLeuLysPheLeuAlaLeuThrGluLysThrLeuGlnGln : 285 bp {!}:!!! !!..|||:!!:!!! !! !||| ! ..!:!!.!.!:! -+{u}LeuCysSerPheIleSerArgIleGluAspValMetAsnArg 260516 : ...........tg{A}TTGTGCAGCTTCATATCGCGTATCGAGGATGTGATGAACCGG : 260813 286 : IleSerPheThrGluPheLeuGlyCysThrLeuAspIleCysLeuValGlyTyrTyrV : 305 |||!!!||| !|||!!.!!! !!|||||||||||||||||||||:!!|||||||||: IleCysPheLeuGluLeuPheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrI 260814 : ATATGCTTCCTGGAGTTGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATA : 260873 306 : alIleMet >>>> Target Intron 2 >>>> GluSerLysSerAsnAspVal : 314 !!:!!||| 852 bp |||!!! ..!.!.|||:!! leLeuMet++ ++GluTrpAlaGluGlnAspIle 260874 : TTCTTATGgt.........................agGAATGGGCTGAGCAAGATATA : 261752 315 : ThrSerValIleThrTyrValIleLeuLeuIleSerLeuThrPheAsnIlePheIleP : 334 !!:!:!! !|||||| !!!!::!!||||||:!!:!! !||||||:!!||||||. GlnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheIleI 261753 : CAAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAA : 261812 335 : heCysTyrIleGlyGluIleValAlaGluGluCysArgLysIle : 348 !!||||||||||||||||||:!!.!!|||:!! !:! ! :!: leCysTyrIleGlyGluIleLeuThrGluGlnValGlnHisLeu 261813 : TCTGTTACATCGGTGAAATACTAACGGAACAGGTACAACATTTG : 261856 vulgar: AfOr20 9 348 . KQ414889.1 259718 261856 + 544 M 34 102 G 0 3 M 148 444 G 0 6 M 79 237 S 0 2 5 0 2 I 0 256 3 0 2 S 1 1 M 36 108 5 0 2 I 0 848 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259719 261856 544 + . gene_id 7 ; sequence AfOr20 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259719 260512 . + . KQ414889.1 exonerate:protein2genome:local exon 259719 260512 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260513 260514 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 260513 260772 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260771 260772 . + . intron_id 0 ; splice_site "TG" KQ414889.1 exonerate:protein2genome:local cds 260773 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260773 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261856 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261856 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259719 261856 544 + . alignment_id 7 ; Query AfOr20 ; Align 259719 10 102 ; Align 259824 44 444 ; Align 260274 192 237 ; Align 260774 272 108 ; Align 261734 308 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 463 Query range: 6 -> 348 Target range: 256589 -> 258387 7 : LysAlaAsnThrAlaAsnGlnLysPheTyrSerThrAspTyrGluTyrGlnLysAsnV : 26 ::: !!:!||| !!.!.!.:!!||| ! !..! ! .!.!:!:!!!.. !! ArgMetSerThrMetThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrS 256590 : CGCATGAGCACGATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACA : 256647 27 : alAsnLeuSerIleGluTyrAsnArgTrpLeuLeuLysProMetGlyValTrp<->Pr : 44 !:!!! !|||:!!:!!! |||||||||!!!|||||||||!!:|||!.!||| || erAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProPr 256648 : GCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACC : 256704 45 : oAsnSerTyrThrLeuArgSerLysAspTyrLeuTyrTrpLeuIleAsnIleValCys : 63 |:::|||! !||| !! ! !:!! !!:!!! :!!:!:|||||||||||| oSerSerSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCys 256705 : CTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGC : 256761 64 : TyrSerLeuIleSerPheLeuPheIleProCysThrLeuTyrLeuPheLeuGluIleG : 83 |||.!!! !|||! !||| !!!.||||||||| !|||:!!:!!||||||!!: !! TyrGlySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspA 256762 : TATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACG : 256821 84 : luAspPheTyrGlyLysLeuLysGlnPheGlyProLeuIlePheCysMetMetAlaPh : 102 !:..!|||||| |||:::|||...|||||||||:!!! ! !!! !!:!!:::!! spSerPheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCy 256822 : ACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTG : 256878 103 : eValLysTyrTyrTyrLeuIleAlaHisLysThrAspIleArgGluCysValGluArg : 121 !!.!!!.||| ! |||:!: !!!. !! !||||||||| ! |||||||||!.! sAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHis 256879 : TGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCAT : 256935 122 : IleLysTrpAspTrpLysAsnIleThrTyrAlaLysAspLysGluIleMetIleThrT : 141 |||:!! !||||||!:!! :!:! ! ! !||||||:!!:!!:!:|||!!:! ! IleGluThrAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysA 256936 : ATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGA : 256995 142 : yrAlaAsnPheGlyArgLysLeuValValValCysThrPhePheMetTyrSerGlyPh : 160 !!|||!..||||||||| ! :!!!.!..! !!|||.!! !.!!||| ! |||||| snAlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyVa 256996 : ACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgt : 257052 161 : eAlaPheTyrTyrIleAlaIleProIleSerValGlyArgValLysThrAspAsnLeu : 179 ::::::::::!! !!:!:!:!..!! !! !:!! ! ..!! ||| ! lPheCysPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGlu 257053 : tttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAA : 257109 180 : ThrPheIleProLeuValPheProPheSerArgPhe<-><->IleValAspThrArgT : 197 ||| ||| !! !|||.!.||| !!!!! !!:! :!::!!:!!..! ! ThrThrIleValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspG 257110 : ACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATC : 257169 198 : yrSerProThrAsnGluIleValPheSerIleGlnLeuMetAlaGlyAlaLeuMetHi : 216 ! ||||||||||||||||||||| !!! !!!:||| ! !:!!..! !:!! ! lnSerProThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaTh 257170 : AGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGAC : 257226 217 : sGlyIleThrSerAlaAlaCysSerLeuValAlaThrPheAlaValHisAlaCysGly : 235 ! !! !||| !::! !! !||||||!.!|||..!||||||..!||||||! !||| rThrSerThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGly 257227 : TACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGT : 257283 236 : GlnMetGlnValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgLeuAspMetA : 255 |||:!! |||||||||:::|||:!! !.!.!!!:!::!!! ! ! !:!! : GlnLeuThrValLeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgG 257284 : CAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGgg : 257343 256 : spGluArgLeuAspGlyArgIleAlaAspValIleCysGln<->HisValArgValLe : 273 ::::: ... !!:! ! !! !|||||| :!! |||:!!|||||||| luLysThrPheProPheLysGlnIleGlyValIleValGluHisHisLeuArgValLe 257344 : agaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCT : 257400 274 : u{Ly} >>>> Target Intron 1 >>>> {s}PheLeuAlaLeuThrGluLys : 281 |{!:} 760 bp {!}! !:!! !! ! !.!. ! u{Ar}++ +-{g}CysValMetTyrArgAsnLeu 257401 : G{AG}gt.........................ac{G}TGCGTTATGTACCGAAACCTG : 258184 282 : ThrLeuGlnGlnIleSerPheThrGluPheLeuGlyCysThrLeuAspIleCysLeuV : 301 !! !|||.!. !! ! ! ! !:! !..!! ! !!:!! !!! | LeuGlnGlnAsnGly***AsnArgThrTyrAsnAsnPheProIleHisSerTyrSerV 258185 : TTGCAACAAAATGGTTAAAATCGTACCTACAATAATTTTCCTATACACAGctattctg : 258244 302 : alGlyTyrTyrValIleMetGluSerLysSerAsnAspValThrSerValIleThrTy : 320 || :::||| ......|||!!!...!!!...|||::: :::::: :::|| alIlePheTyrTyrPheGlnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerTy 258245 : ttattttttattattttcaggaATGGTCTACGCaagatattcaaaatttgagttcgta : 258301 321 : rValIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGlu : 339 | !!!!::!!||||||||||||:::||||||||||||:::...||||||||||||||| rPheMetIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGlu 258302 : CTTTATGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAA : 258358 340 : IleValAlaGluGluCysArgLysIle : 348 |||:!!.!!|||:!! ! :::||| IleLeuThrGluGlnValProGluIle 258359 : ATATTAACAGAACAGGTACCagagatt : 258387 vulgar: AfOr20 6 348 . KQ414889.1 256589 258387 + 463 M 37 111 G 0 3 M 148 444 G 0 6 M 77 231 G 0 3 M 5 15 S 0 2 5 0 2 I 0 756 3 0 2 S 1 1 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256590 258387 463 + . gene_id 8 ; sequence AfOr20 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256590 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256590 257404 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 258164 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258163 258164 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 258165 258387 . + . KQ414889.1 exonerate:protein2genome:local exon 258165 258387 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256590 258387 463 + . alignment_id 8 ; Query AfOr20 ; Align 256590 7 111 ; Align 256704 44 444 ; Align 257154 192 231 ; Align 257388 269 15 ; Align 258166 275 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 455 Query range: 26 -> 347 Target range: 262846 -> 264657 27 : AsnLeuSerIleGluTyrAsnArgTrpLeuLeuLysProMetGlyValTrpProAsnS : 46 :!!! !|||:!::!! |||||||||||||||||||||!!:|||!.!|||||| | AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 47 : erTyrThrLeuArgSerLysAspTyrLeuTyrTrp<->LeuIleAsnIleValCysTy : 64 || !:!!:!! !!!!! !!!: :!! !||| |||:!!! !:!!|||||||| erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 65 : rSerLeuIleSerPheLeuPheIleProCysThrLeuTyrLeuPheLeuGluIleGlu : 83 |!!!|||||| !! ! ! !!||||||! !! !|||:!!:!! !!|||||| !||| rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 84 : AspPheTyrGlyLysLeuLysGlnPheGlyProLeuIlePheCysMetMetAlaPheV : 103 :!!|||:!! !||||||:!! .!!||||||||| ! !! .!.:!:!.!.!.: AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 104 : alLysTyrTyrTyrLeuIleAlaHisLysThrAspIleArgGluCysValGluArgIl : 122 !!!!.||| !!::|||:!: !|||!..! !||||||!:!! ||||||:!!!.!:! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 123 : eLysTrpAspTrpLysAsnIleThrTyrAlaLysAspLysGluIleMetIleThrTyr : 141 ::!! |||||| ! !:!:||| !:!!|||:!!...||||||:!:! ! !! lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 142 : AlaAsnPheGlyArgLysLeuValValValCysThrPhePheMetTyrSerGlyPheA : 161 |||!!.!:!|||||| ! :!!!.!!.! !|||.!!.!!|||||| ! !!!.!!.!! AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 162 : laPheTyrTyrIleAlaIleProIleSerValGlyArgValLysThrAspAsnLeuTh : 180 !! ! ! ! !:!!!.!! ! !!.!!!!!..! ! !:!!:!! !! !||| !|| etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 181 : rPheIle<-><->ProLeuValPheProPheSerArgPheIleValAspThrArgTyr : 197 | ||| !||| !! !||| ! ! !!:! |||:!! ..! ! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 198 : SerProThrAsnGluIleValPheSerIleGlnLeuMetAlaGlyAlaLeuMetHisG : 217 !:!||||||||||||||| !!.!!:!!! |||!!!:!!:!!||| !:!!:!: !! AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 218 : lyIleThrSerAlaAlaCysSerLeuValAlaThrPheAlaValHisAlaCysGlyGl : 236 .!! !||| !!.!|||! !.!!:!!..!|||..!||||||! !|||||||||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 237 : nMetGlnValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgLeuAspMetAsp : 255 |:!!.!.|||||||||::!|||:!! !.!.!!!:!::!! ! ! !||| !:!! nLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsn 263484 : GTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAAT : 263540 256 : GluArgLeu<->AspGlyArgIleAlaAspValIleCysGlnHisValArgValLeu{ : 274 :!!!.!||| ! !..!|||!.!! :!!:!! !!.|||:!!|||||||||{ LysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeu{ 263541 : AAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTG{ : 263600 275 : Ly} >>>> Target Intron 1 >>>> {s}PheLeuAlaLeuThrGluLysTh : 282 !.} 72 bp {.}|||:!!! !! !! !:!!!!... Se}++ ++{r}PheIleAspArgIleLysAsnVa 263601 : AG}gt.........................ag{T}TTCATAGATCGTATTAAGAATGT : 263696 283 : rLeuGlnGlnIleSerPheThrGluPheLeuGlyCysThrLeuAspIleCys{Le} : 300 !:!!... !|||!!!|||..!|||!!.!!! !..!|||||||||||||||{:!} lMetSerThrIleCysPheValGluLeuPheLysAlaThrLeuAspIleCys{Il}+- 263697 : GATGAGTACGATATGTTTCGTGGAGTTATTCAAGGCTACGCTGGATATATGC{AT}gc : 263752 301 : >>>> Target Intron 2 >>>> {u}ValGlyTyrTyrValIleMetGluSerL : 310 764 bp {!}:!! ! ! !!|||.!!..!|||!!!: +-{e}IleThrIleAspValPheGlnGluTrpG 263753 : .........................aa{T}ATAACAATTGACGTTTTTCAGGAATGGG : 264544 311 : ysSerAsnAspValThrSerValIleThrTyrValIleLeuLeuIleSerLeuThrPh : 329 !!|||:!:|||::: :::::: !|||||| !!!!::!!|||||||||:!! ! luSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerMetCysGl 264545 : AAAGTCAtgatattcaaaatttgacTACATATTTCATGATACTGATATCAATGTGCGG : 264601 330 : eAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGluCysArgLys : 347 !|||||||||:!!.!.||||||||||||||||||:!!.!!|||::: ||| yAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGlnValIleLys 264602 : CAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcaggtaattaaa : 264657 vulgar: AfOr20 26 347 . KQ414889.1 262846 264657 + 455 M 31 93 G 0 3 M 125 375 G 0 6 M 76 228 G 0 3 M 15 45 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 25 75 S 0 2 5 0 2 I 0 760 3 0 2 S 1 1 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 264657 455 + . gene_id 9 ; sequence AfOr20 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262847 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263601 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 263673 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263672 263673 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 263674 263751 . + . KQ414889.1 exonerate:protein2genome:local exon 263674 263751 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263752 263753 . + . intron_id 2 ; splice_site "GC" KQ414889.1 exonerate:protein2genome:local intron 263752 264515 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264514 264515 . + . intron_id 1 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 264516 264657 . + . KQ414889.1 exonerate:protein2genome:local exon 264516 264657 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262847 264657 455 + . alignment_id 9 ; Query AfOr20 ; Align 262847 27 93 ; Align 262943 58 375 ; Align 263324 183 228 ; Align 263555 259 45 ; Align 263675 275 75 ; Align 264517 301 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 450 Query range: 26 -> 306 Target range: 266634 -> 267555 27 : AsnLeuSerIleGluTyrAsnArgTrpLeuLeuLysProMetGlyValTrpProAsn< : 46 :!!! !|||:!::!!! |||||||||!!!|||||||||!!:|||!.!|||||| AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProL 266635 : GATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGT : 266692 47 : ->SerTyrThrLeuArgSerLysAspTyrLeuTyrTrpLeuIleAsnIleValCysTy : 64 ||| !|||! !!:! !:!! !:!!! !!:: !:!:! !:!!:!!||||| euSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266693 : TGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 65 : rSerLeuIleSerPheLeuPheIleProCysThrLeuTyrLeuPheLeuGluIleGlu : 83 |!!!! !||| !||| ! ! ||||||||| !!!!:!!||| !!|||||| !||| rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 84 : AspPheTyrGlyLysLeuLysGlnPheGlyProLeuIlePheCysMetMetAlaPheV : 103 ..!.!! ! !|||:!!||| !||||||||||||! ! !!! .!.:!:!.! : SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 104 : alLysTyrTyrTyrLeuIleAlaHisLysThrAspIleArgGluCysValGluArgIl : 122 !!!!.||| ! |||:!: !!.!!..! !!!:||||||! |||||||||!.!!! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 123 : eLysTrpAspTrpLysAsnIleThrTyrAlaLysAspLysGluIleMetIleThrTyr : 141 ::!! ||||||!:!! !:!:||| !!:!!||||||:!!:!:|||:!:! ! !! tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 142 : AlaAsnPheGlyArgLysLeuValValValCysThrPhePheMetTyrSerGlyPheA : 161 |||!...!!|||||| ! :!!!.!:!! !!|||.!! |||||| ! !!!||| !! AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 162 : laPheTyrTyrIleAlaIleProIleSerValGlyArgValLysThrAspAsnLeuTh : 180 ! !|||! !:!: !! !!.!!!!!:!! !! !|||:!!..!! !||| !|| euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 181 : rPheIleProLeuValPheProPheSerArgPhe<-><->IleValAspThrArgTyr : 197 | ||| !! !:!!!!.|||! !:!! !!:! !!::!!! ..! ! ! rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 198 : SerProThrAsnGluIleValPheSerIleGlnLeuMetAlaGlyAlaLeuMetHisG : 217 |||||||||||||||||||||.!! ! !|||!!!:!::!!||| !:!!:!!:!!. SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 218 : lyIleThrSerAlaAlaCysSerLeuValAlaThrPheAlaValHisAlaCysGlyGl : 236 .!! !..! !!.!|||! !||||||!.!|||..!||||||!.!|||||||||||||| erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 237 : nMetGlnValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgLeuAspMetAsp : 255 |:!!...|||||||||! |||:!!:!!.!.!!!:!::!! !! ! !|||! :!! nLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsn 267272 : GCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAAT : 267328 256 : GluArgLeu<->AspGlyArgIleAlaAspValIleCysGlnHisValArgValLeu{ : 274 :!!!.!:!! !! !!:!|||!.!! |||:!! !!.|||:!!|||||||||{ LysAsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{ 267329 : AAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{ : 267388 275 : Ly} >>>> Target Intron 1 >>>> {s}PheLeuAlaLeuThrGluLysTh : 282 !.} 69 bp {.}|||:!!|||! !! !|||!.... Se}++ ++{r}PheIleAlaArgIleGluSerVa 267389 : AG}gt.........................ag{C}TTCATAGCACGTATCGAAAGTGT : 267481 283 : rLeuGlnGlnIleSerPheThrGluPheLeuGlyCysThrLeuAspIleCysLeuVal : 301 !:!!...:!!|||!!!|||! !|||!!.!!! !||||||:!!|||||||||:!!:!! lMetSerGluIleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeu 267482 : AATGAGCGAAATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTT : 267538 302 : GlyTyrTyrValIle : 306 .!!||||||:!!:!! SerTyrTyrIleLeu 267539 : AGCTATTATATCCTT : 267555 vulgar: AfOr20 26 306 . KQ414889.1 266634 267555 + 450 M 19 57 G 0 3 M 146 438 G 0 6 M 67 201 G 0 3 M 15 45 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266635 267555 450 + . gene_id 10 ; sequence AfOr20 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266635 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266635 267389 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267555 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266635 267555 450 + . alignment_id 10 ; Query AfOr20 ; Align 266635 27 57 ; Align 266695 46 438 ; Align 267139 192 201 ; Align 267343 259 45 ; Align 267460 275 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 409 Query range: 26 -> 306 Target range: 274380 -> 275306 27 : AsnLeuSerIleGluTyrAsnArgTrpLeuLeuLysProMetGlyValTrpPro<->A : 45 :!!! !|||:!::!!! |||||||||!!!|||||||||!!:|||!.!|||||| AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuA 274381 : GACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAG : 274438 46 : snSerTyrThrLeuArgSerLysAspTyrLeuTyrTrpLeuIleAsnIleValCysTy : 64 !||| !||| !!:!! !:!! !|||! |||::: ...:::||||| laSerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTy 274439 : CCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctA : 274495 65 : rSerLeuIleSerPheLeuPheIleProCysThrLeuTyrLeuPheLeuGluIleGlu : 83 |!!!!!!||| !! ! ! !!|||||| !!! !!!!:!!:!!.!.|||! ! !||| rCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGlu 274496 : CTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAA : 274552 84 : AspPheTyrGlyLysLeuLysGlnPheGlyProLeuIlePheCysMetMetAlaPheV : 103 ..!.!!:!! !||||||||| !.!!||||||||| ! !!! .!.!!:!.! : SerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyI 274553 : AGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAA : 274612 104 : alLysTyrTyrTyrLeuIleAlaHisLysThrAspIleArgGluCysValGluArgIl : 122 !!!!.||| ! |||:!: !!.!!..! !!!:||||||! |||||||||!.!!! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 274613 : TTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACAT : 274669 123 : eLysTrpAspTrpLysAsnIleThrTyrAlaLysAspLysGluIleMetIleThrTyr : 141 ::!! ||||||!:!! !:!:||| !!:!!|||:!!:!!:!:|||:!:! ! !! tGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsn 274670 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAAC : 274726 142 : AlaAsnPheGlyArgLysLeuValValValCysThrPhePheMetTyrSerGlyPheA : 161 |||!!..!!|||||| ! :!!!.!:!! !!|||.!! |||||| ! !!!||| !! AlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 274727 : GCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTC : 274786 162 : laPheTyrTyrIleAlaIleProIleSerValGlyArgValLysThrAspAsnLeuTh : 180 !! !|||! !:!: !! ! !!.!!!!!:!! !! !|||:!!..!! ||| !|| euCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluTh 274787 : TCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGAC : 274843 181 : rPheIleProLeuValPheProPheSerArgPhe<-><->IleValAspThrArgTyr : 197 | ! ! !! !:!!!!.|||! !!.! !!:! ||||||! ..! ! rArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThr 274844 : CAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACG : 274900 198 : SerProThrAsnGluIleValPheSerIleGlnLeuMetAlaGlyAlaLeuMetHisG : 217 |||||||||||||||||||||.!!:!! |||!!!:!!:!!||| !:!!:!!:!!. SerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnS 274901 : AGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATT : 274960 218 : lyIleThrSerAlaAlaCysSerLeuValAlaThrPheAlaValHisAlaCysGlyGl : 236 .!! !.!! !!.!|||! !||||||!.!|||..!||||||!.!||||||! !||||| erSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGl 274961 : CGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCA : 275017 237 : nMetGlnValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgLeuAspMetAsp : 255 |:!!...|||||||||! |||:!! .!.!!!:!::!! ! ! !|||...::: nLeuSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsn 275018 : GTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaat : 275074 256 : GluArgLeu<->AspGlyArgIleAlaAspValIleCysGlnHisValArgValLeu{ : 274 :::...::: ..!..!|||!.!! |||:!! !!.|||:!!|||||||||{ LysAsnValTyrPheSerGluIleGlyValValValGluHisHisLeuArgValLeu{ 275075 : aaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTC{ : 275134 275 : Ly} >>>> Target Intron 1 >>>> {s}PheLeuAlaLeuThrGluLysTh : 282 !.} 74 bp {.}|||:!!|||! !! !||| ! .. Se}++ ++{r}PheIleAlaArgIleGluAspVa 275135 : AG}gt.........................ag{T}TTCATAGCACGTATCGAGGATGT : 275232 283 : rLeuGlnGlnIleSerPheThrGluPheLeuGlyCysThrLeuAspIleCysLeuVal : 301 !:!!.!.!:!|||!!!|||! !|||!!.!!! !||||||||||||!!:|||:!!:!! lMetAsnArgIleCysPheMetGluLeuPheLysCysThrLeuAspMetCysMetLeu 275233 : GATGAATCGAATATGCTTCATGGAATTGTTCAAGTGTACTCTGGATATGTGCATGCTT : 275289 302 : GlyTyrTyrValIle : 306 |||||||||:!!:!! GlyTyrTyrIleLeu 275290 : GGCTATTACATTCTC : 275306 vulgar: AfOr20 26 306 . KQ414889.1 274380 275306 + 409 M 18 54 G 0 3 M 147 441 G 0 6 M 67 201 G 0 3 M 15 45 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274381 275306 409 + . gene_id 11 ; sequence AfOr20 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274381 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274381 275135 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274381 275306 409 + . alignment_id 11 ; Query AfOr20 ; Align 274381 27 54 ; Align 274438 45 441 ; Align 274885 192 201 ; Align 275089 259 45 ; Align 275211 275 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 407 Query range: 18 -> 274 Target range: 303169 -> 304869 19 : AspTyrGluTyrGlnLysAsnValAsnLeuSerIleGluTyrAsnArgTrpLeuLeuL : 38 :!!! .!.|||:!!|||:!!:!! !! ! !! !:!!:!!!:!!:!|||:!!|||| AsnLeuAsnTyrLysLysAspIleValTyrValThrLysHisSerLysTrpIleLeuL 303170 : AATTTGAATTACAAGAAAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCCTGA : 303227 39 : ysProMetGlyValTrpProAsnSerTyrThrLeuArgSerLysAspTyrLeuTyrTr : 57 || !!:!:|||:!!|||||| :!! ! !..!!!! !! !:!||| ysSerLeuGlyIleTrpPro---AlaValLeuAspGluThrAlaGlyPheLeuProLy 303228 : AGTCCCTTGGTATTTGGCCA---GCCGTGTTGGACGAAACCGCAGGATTCCTACCAAA : 303281 58 : pLeuIleAsnIleValCysTyrSerLeuIleSerPheLeuPheIleProCysThrLeu : 76 :!!! !! ! !:!! !! !!! !:!!:!!! !||| ! ! |||||||||! !||| sIleThrIleGlyLeuSerAsnLeuValLeuLeuPheThrValIleProCysIleLeu 303282 : AATCACCATTGGACTCAGTAATTTGGTTCTATTATTCACCGTGATACCGTGTATTCTA : 303338 77 : TyrLeuPheLeuGluIleGluAspPheTyrGlyLysLeuLysGlnPheGlyProLeuI : 96 :!!:!!.!.!!!||| !:!!||| !!:!||||||! !||||||! !|||! HisIleIlePheGluGlnLysAspThrIleIleArgLeuLysLeuPheGlyLeuLeuS 303339 : CACATAATATTCGAACAAAAGGATACGATAATAAGATTGAAACTATTCGGTCTGCTGA : 303398 97 : lePheCysMetMetAlaPheValLysTyrTyrTyrLeuIleAlaHisLysThrAspIl : 115 !||||||:!!!!::!!!!.:!!||||||!:: !||| !.!!!..||| !! || erPheCysLeuIleSerLeuMetLysTyrTrpAlaLeuAlaThrArgLysProArgIl 303399 : GTTTCTGTTTGATCTCGTTGATGAAGTATTGGGCCCTCGCCACGCGGAAACCAAGGAT : 303455 116 : eArgGluCysValGluArgIleLysTrpAspTrpLysAsn >>>> Target Intr : 129 |!:!||||||:!!|||..!:!::!! ! |||||||||.!. 938 bp eLysGluCysIleGluGluValGlnSerAspTrpLysGlu++ 303456 : CAAAGAATGTATAGAAGAGGTGCAAAGTGATTGGAAAGAGgt................ : 303499 130 : on 1 >>>> IleThrTyrAlaLysAspLysGluIleMetIleThrTyrAlaAsnPh : 144 :!: !! ! !!:!|||:::|||!!:|||:!!! !|||!.!.!..! ++ValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMe 303500 : .........agGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAAT : 304480 145 : eGlyArgLysLeuValValValCysThrPhePheMetTyrSerGlyPheAlaPheTyr : 163 .||||||!!.|||..!:!!:!!|||.!!.!.|||||||||!!!||| !.!!.!!||| tGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIleTyr 304481 : GGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATTTAT : 304537 164 : TyrIleAlaIleProIleSerValGlyArg<->ValLysThrAspAsnLeuThrPheI : 182 :!!! !.!!!:! !.!!:!!..!|||! ! ||| ! ! !!|||! !|||.!!! HisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgThrIleL 304538 : CACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTACGATTA : 304597 183 : leProLeuValPheProPheSerArgPheIleValAspThrArgTyrSerProThrAs : 201 !|||||||||!:!||| !! !!!! !:!! !!|||..!!:! ||||||! ! ! ysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIleTy 304598 : AACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTA : 304654 202 : nGluIleValPheSerIleGlnLeuMetAlaGlyAlaLeuMetHisGlyIleThrSer : 220 !|||:!:|||!:!! !:!!!!.! !|||..!||| !:!!!!::!!..!||||||:!! rGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThrAla 304655 : CGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGCT : 304711 221 : AlaAlaCysSerLeuValAlaThrPheAlaValHisAlaCysGlyGlnMetGlnValL : 240 !.!||||||.!!|||!.!||| !||||||..!|||||||||||||||!!:.!.:!!: GlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleV 304712 : GGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCG : 304771 241 : euMetAsnTrpLeuGlnHisLeuIleAspGlyArgLeuAspMetAspGluArgLeuAs : 259 !!|||::! ! ||| !!|||:!!:!!.!!!:! !... ||| ||||| alMetSerArgLeuGlyAspLeuValAsnSerLysGluSerSerAsp------LeuAs 304772 : TTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCATCTGAT------TTAGA : 304822 260 : pGlyArgIleAlaAspValIleCysGlnHisValArgValLeuLys : 274 | !|||:!! !!!::!!:!! !!.|||:!!|||:!!|||!:! pLysArgLeuIleGluIleValGluHisHisLeuArgIleLeuArg 304823 : TAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTAAGG : 304869 vulgar: AfOr20 18 274 . KQ414889.1 303169 304869 + 407 M 26 78 G 1 0 M 83 249 5 0 2 I 0 934 3 0 2 M 45 135 G 0 3 M 82 246 G 2 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303170 304869 407 + . gene_id 12 ; sequence AfOr20 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303170 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303170 303496 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304869 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304869 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 303170 304869 407 + . alignment_id 12 ; Query AfOr20 ; Align 303170 19 78 ; Align 303248 46 249 ; Align 304435 129 135 ; Align 304573 174 246 ; Align 304819 258 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 406 Query range: 23 -> 278 Target range: 232447 -> 233221 24 : LysAsnValAsnLeuSerIleGluTyrAsnArgTrpLeuLeuLysProMetGlyValT : 43 ::!:!! !.!.! !||||||:!! |||||||||!!!|||! !|||||||||!.!| ArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaT 232448 : CGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCAT : 232505 44 : rpProAsn<->SerTyrThrLeuArgSerLysAspTyrLeuTyrTrpLeuIleAsnIl : 61 |||||..! !!! ! |||! !|||:!!:!!.!. ||| |||:!:!..:! rpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLe 232506 : GGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACT : 232562 62 : eValCysTyrSerLeuIleSerPheLeuPheIleProCysThrLeuTyrLeuPheLeu : 80 !..!|||:!!||||||!!:! !! !! !.!!:!!||||||! !|||!:!:!!.!.!!! uThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPhe 232563 : CACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTC : 232619 81 : GluIleGluAspPheTyrGlyLysLeuLysGlnPheGlyProLeuIlePheCysMetM : 100 ||| ! !..!.!. ! ! !!:!:!!|||....!!||||||:!!! ! !! !:!!| GluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuM 232620 : GAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGA : 232679 101 : etAlaPheValLysTyrTyrTyrLeuIleAlaHisLysThrAspIleArgGluCysVa : 119 ||!.! :!!!!.|||! !! !|||:!:||| ! !!.!||||||! ! ! ||||| etGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysVa 232680 : TGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGT : 232736 120 : lGluArgIleLysTrpAspTrpLysAsnIleThrTyrAlaLysAspLysGluIleMet : 138 ||||!:!:!:||| !||||||::!|||:!!! ! ! !! !!:::!!::!:||| lGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMet 232737 : GGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATG : 232793 139 : IleThrTyrAlaAsnPheGlyArgLysLeuValValValCysThrPhePheMetTyrS : 158 :!:! ! !!|||!!..!!||||||..!:!!!.! !:!!..!.!!|||! !|||:!!! LeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisT 232794 : TTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACA : 232853 159 : erGlyPheAlaPheTyrTyrIle<-><->AlaIleProIleSerValGlyArgValLy : 175 !!||| !!!.!! ! !! ! ||| !.!:!!! !!!:|||..! ! !||| hrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGl 232854 : CCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGG : 232910 176 : sThrAspAsnLeuThrPheIleProLeuValPheProPheSerArgPheIleValAsp : 194 !!.!!!:!:!! !:!!.!. !|||||| !! ! !!|||! !! ! :!::!!||| yAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAsp 232911 : GAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGAC : 232967 195 : ThrArgTyrSerProThrAsnGluIleValPheSerIleGlnLeuMetAlaGlyAlaL : 214 ||||||!:!||||||||||||||||||:!!||| !:!!|||! !:!::!!||| !: ThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheI 232968 : ACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCA : 233027 215 : euMetHisGlyIleThrSerAlaAlaCysSerLeuValAlaThrPheAlaValHisAl : 233 !!:!!:!!..!:!!||| !!.!||||||.!!|||! !|||..!.!.|||:!!||||| leValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAl 233028 : TCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGC : 233084 234 : aCysGlyGlnMetGlnValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgLeu : 252 ||||||||||:!!.!.|||:!!|||::: |||.!. !!|||:!:|||!.!!:! ! aCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGly 233085 : GTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGG : 233141 253 : AspMetAspGluArgLeuAspGlyArgIleAlaAspValIleCysGlnHisValArgV : 272 .!. !!!:..! ! !.!. !!!:!:!!!.! !:!!:!: !!.|||:!!|||. GlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgT 233142 : CAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTA : 233201 273 : alLeuLysPheLeuAlaLeu : 278 .!|||!:!!:!|||:!!:!! hrLeuArgTyrLeuSerVal 233202 : CATTAAGGTATTTGTCTGTG : 233221 vulgar: AfOr20 23 278 . KQ414889.1 232447 233221 + 406 M 22 66 G 0 3 M 120 360 G 0 6 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232448 233221 406 + . gene_id 13 ; sequence AfOr20 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232448 233221 . + . KQ414889.1 exonerate:protein2genome:local exon 232448 233221 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232448 233221 406 + . alignment_id 13 ; Query AfOr20 ; Align 232448 24 66 ; Align 232517 46 360 ; Align 232883 166 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 372 Query range: 16 -> 250 Target range: 278543 -> 279263 17 : SerThrAspTyrGluTyrGlnLysAsnValAsnLeuSerIleGluTyrAsnArgTrpL : 36 |||||||||! !!::.!.! !:!! !! ! !|||:!!:!! |||||||||! SerThrAspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpP 278544 : TCAACCGATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGT : 278601 37 : euLeuLysProMetGlyValTrpProAsnSerTyrThrLeuArgSerLysAspTyrLe : 55 !!|||||||||!!:|||||||||||| !||| ! !:!!! !!!! !!!: ! :! heLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIl 278602 : TTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGAT : 278658 56 : uTyrTrpLeuIle<->AsnIleValCysTyrSerLeuIleSerPheLeuPheIlePro : 73 ! !! :!!:!! :!!:!! !!! !! !||||||.!!||||||!!.:!!||| eSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValPro 278659 : CAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCG : 278715 74 : CysThrLeuTyrLeuPheLeuGlu<->IleGluAspPheTyrGlyLysLeuLysGlnP : 92 |||.!!|||! ! ! ! |||!!: ! !! |||.!! !! !|||:!!|||..!. CysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetI 278716 : TGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGA : 278775 93 : heGlyProLeuIlePheCysMetMetAlaPheValLysTyrTyrTyrLeuIleAlaHi : 111 !!|||||||||! !||||||! !|||||| :!!||||||||| !|||!!::!!!. leGlyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerAr 278776 : TCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCG : 278832 112 : sLysThrAspIleArgGluCysValGluArgIleLysTrpAspTrpLys<->AsnIle : 129 ! ! ! ||| !!:!!||||||.!. !|||::: !||||||... !..:!! gGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeu 278833 : CGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTT : 278889 130 : ThrTyr<-><->AlaLysAspLysGluIleMetIleThrTyrAlaAsnPheGlyArgL : 147 :!!||| :::::::::|||||||||! ! !|||!...!!||||||. SerTyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgS 278890 : TCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGAT : 278949 148 : ysLeuValValValCysThrPhePheMetTyrSerGlyPheAlaPheTyrTyrIleAl : 166 ..|||!.!:!! !! !!.!! !||||||||||||||| !.!|||||| ! !!. erLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaVa 278950 : CTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGT : 279006 167 : aIleProIleSerValGlyArgValLys<->ThrAspAsnLeuThrPheIleProLeu : 184 !!!:|||:!:! !!.!! !|||..!:!! ! !|||||| !||| ! ! ! !!! ! lMetProLeuPheAlaValArgThrGluIleIleAspAsnGluThrValArgSerGln 279007 : GATGCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAA : 279063 185 : ValPheProPheSerArgPheIleValAspThrArgTyrSerProThrAsnGluIleV : 204 !.!||||||.!!! !||| !:!!:!!||| !!||| !||||||:!! !||||||| AlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleV 279064 : GCGTTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCG : 279123 205 : alPheSerIleGlnLeuMetAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCy : 223 || ! !!!:|||! !:!!|||!.! !:!!:!::!!..!:!!||| !!.!||||| alGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCy 279124 : TGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTG : 279180 224 : sSerLeuValAlaThrPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetAsn : 242 |||||||:!!|||..!|||!.!:!!|||!.!|||||||||.!.::!:!!|||:!!!.. sSerLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThr 279181 : CAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACA : 279237 243 : TrpLeuGlnHisLeuIleAspGly : 250 !|||.!. ! |||||||||||| LysLeuAspLysLeuIleAspGly 279238 : AAGCTGGATAAGCTCATCGACGGA : 279263 vulgar: AfOr20 16 250 . KQ414889.1 278543 279263 + 372 M 43 129 G 0 3 M 22 66 G 0 3 M 46 138 G 0 3 M 4 12 G 0 6 M 44 132 G 0 3 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278544 279263 372 + . gene_id 14 ; sequence AfOr20 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278544 279263 . + . KQ414889.1 exonerate:protein2genome:local exon 278544 279263 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278544 279263 372 + . alignment_id 14 ; Query AfOr20 ; Align 278544 17 129 ; Align 278676 60 66 ; Align 278745 82 138 ; Align 278886 128 12 ; Align 278904 132 132 ; Align 279039 176 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 305 Query range: 10 -> 283 Target range: 236801 -> 237626 11 : AlaAsnGlnLysPheTyrSerThrAspTyrGluTyrGlnLysAsnValAsnLeuSerI : 30 ::!|||.!.||| ! !|||!!: !.!. !:! !:!!! !|||: SerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerL 236802 : AGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTC : 236859 31 : leGluTyrAsnArgTrpLeuLeuLysProMetGlyValTrpProAsnSerTyrThrLe : 49 !!:!!!::||||||||| !:!!||| !!!:|||..!|||||| ..!!:!:!!! euGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpPro---GlnPheSerSe 236860 : TCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCA---CAGTTCTCGTC : 236913 50 : uArgSerLysAspTyrLeuTyrTrpLeuIleAsnIleValCysTyrSerLeuIleSer : 68 !!.! !:!! !!:!!! ! ! :!!:!!|||:!::!!||||||!!! !||| ! rAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeu 236914 : GAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTA : 236970 69 : PheLeuPheIleProCysThrLeuTyrLeuPheLeuGluIleGluAspPheTyrGlyL : 88 |||! !.!.|||||||||:!!|||:!!|||.!.||||||! !! ! !|||||| !| PheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrL 236971 : TTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGA : 237030 89 : ysLeuLysGlnPheGlyProLeuIlePheCysMetMetAlaPheValLysTyrTyrTy : 107 ||:!!||| !.!!||| !!|||! ! !!! :!!.!...!.!!:!!!..||| ! ysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMe 237031 : AAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCAT : 237087 108 : rLeuIleAlaHisLysThrAspIleArgGluCysValGluArgIleLysTrpAspTrp : 126 |||:!: !!..:::! ! !||||||.!.! ! !!.!.!.!!!::!! |||||| tLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrp 237088 : GCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGG : 237144 127 : LysAsnIleThrTyrAlaLysAspLysGluIleMetIleThrTyrAlaAsnPheGlyA : 146 !:!!..! ||| ::: ||||||:::|||:!:! !||||||!!.|||.!!| ArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerA 237145 : AGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTC : 237204 147 : rgLysLeuValValValCysThrPhePheMetTyrSerGlyPheAlaPheTyrTyrIl : 165 || ! !!.!:!! !||||||.!!|||!!::!!.!!|||.!. ! |||! !:! rgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysVa 237205 : GATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGT : 237261 166 : eAlaIleProIleSerValGlyArgValLysThrAspAsnLeuThrPheIleProLeu : 184 ! !! ! !! !!!!..! ! !||| !..!! ||| !||| ||| !! ! lMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLeuArg 237262 : TATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGC : 237318 185 : ValPheProPheSerArgPhe<-><->IleValAspThrArgTyrSerProThrAsnG : 202 |||.!.|||!!. !!! !!:! :!!:!! ..! ! !:! !!! !|||! ValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnA 237319 : GTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACG : 237378 203 : luIleValPheSerIleGlnLeuMetAlaGlyAlaLeuMetHisGlyIleThrSerAl : 221 !:|||||| !!! ! !|||!!!:!::!!||| !:!! !:!!..!! !.!!! !:: spIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSe 237379 : ACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAG : 237435 222 : aAlaCysSerLeuValAlaThrPheAlaValHisAlaCysGlyGlnMetGlnValLeu : 240 !!.! ||||||..!::!.!!.!..!! !||||||! !||||||:!!...|||:!! rValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValVal 237436 : TGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTT : 237492 241 : MetAsnTrpLeuGlnHisLeuIle<->AspGlyArgLeuAspMetAspGluArgLeuA : 259 ||| ! !:!!:!! !!!!!:!: !!:!.!|||! ! ! ! !!: !! ! MetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAspHisP 237493 : ATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATCATT : 237552 260 : spGlyArgIleAlaAspValIleCysGlnHisValArgValLeuLysPheLeuAlaLe : 278 !! !..!||| !! :!!:!: :!!|||:!!||||||||||||! :!!..!|| heAspGluIleProThrIleValGluGluHisLeuArgValLeuLys***ValCysLe 237553 : TCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAGTATGTTT : 237609 279 : uThrGluLysThrLeu : 283 | !!!: !! !||| uLeuAspLeuIleLeu 237610 : GTTGGATTTGATTTTG : 237626 vulgar: AfOr20 10 283 . KQ414889.1 236801 237626 + 305 M 34 102 G 1 0 M 146 438 G 0 6 M 57 171 G 0 3 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236802 237626 305 + . gene_id 15 ; sequence AfOr20 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236802 237626 . + . KQ414889.1 exonerate:protein2genome:local exon 236802 237626 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 236802 237626 305 + . alignment_id 15 ; Query AfOr20 ; Align 236802 11 102 ; Align 236904 46 438 ; Align 237348 192 171 ; Align 237522 249 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 296 Query range: 305 -> 411 Target range: 224317 -> 224703 306 : IleMetGluSerLysSerAsnAspValThrSerValIleThrTyrValIleLeuLeuI : 325 .!!...||| ...|||::: !!:!!||||||!.!:!:|||||| !!|||||||||! PheGlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuM 224318 : TTTCaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCA : 224375 326 : leSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGl : 344 !:||||||||||||||||||||||||||||||||||||||||||:!:|||||||||:: etSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl 224376 : TGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAca : 224432 345 : uCysArg{L} >>>> Target Intron 1 >>>> {ys}IleGlyGluIleSer : 352 : :::{|} 65 bp {||}||||||::!:!:||| nValLys{L}-+ +-{ys}IleGlyGlnValSer 224433 : ggtgaaa{a}at.........................aa{aa}attggacaAGTGTCG : 224521 353 : TyrMetIleGluTrpTyrArgLeuMetGlyAsnLysLysLeuPheCysIleLeuIleI : 372 |||||||||!!:||||||||||||! |||||||||||||||! !||||||||||||| TyrMetIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleI 224522 : TACATGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAA : 224581 373 : leAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnIleValAsnLeuSerIl : 391 |||||||||||||||||||||||||||||||||||||||||!!:|||.!.|||!!!:! leAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLe 224582 : TCGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCT : 224638 392 : eSerThrPheThrAspVal<->ValLysThrAlaValThrTyrLeuAsnValLeuGln : 409 !!!!|||||| !|||||| :!!! !! !.!!|||||| :!!!!.! !||| uThrThrPheGlyAspValSerIleThrIleThrValThrIleValLysGluLeuPhe 224639 : AACCACTTTCGGTGACGTAAGTATCACAATCACCGTCACTATAGTCAAAGAACTGTTT : 224695 410 : LysThr : 411 |||||| LysThr 224696 : AAAACT : 224703 vulgar: AfOr20 305 411 . KQ414889.1 224317 224703 + 296 M 41 123 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 50 150 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224318 224703 296 + . gene_id 16 ; sequence AfOr20 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224318 224441 . + . KQ414889.1 exonerate:protein2genome:local exon 224318 224441 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224442 224443 . + . intron_id 1 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local intron 224442 224506 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224505 224506 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 224507 224703 . + . KQ414889.1 exonerate:protein2genome:local exon 224507 224703 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224318 224703 296 + . alignment_id 16 ; Query AfOr20 ; Align 224318 306 123 ; Align 224509 348 150 ; Align 224662 398 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 269 Query range: 59 -> 266 Target range: 204335 -> 204956 60 : AsnIleValCysTyrSerLeuIleSerPheLeuPheIleProCysThrLeuTyrLeuP : 79 :!!:!!||| !||| |||... ...:!!.!!:!!||| !! !||||||:!!| HisValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValP 204336 : CACGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGT : 204393 80 : heLeuGluIleGluAspPheTyrGlyLysLeuLysGlnPheGlyProLeuIlePheCy : 98 |||||:!! :!!:!! ! ! !:::|||||| .!!||||||:!!:!: !|| heLeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCy 204394 : TCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTG : 204450 99 : sMetMetAlaPheValLysTyrTyrTyrLeuIleAlaHisLysThrAspIleArgGlu : 117 |! !!: !||| !!||||||! ! !:!!:!! !!..! ! ! |||!:!:!! sSerIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLys 204451 : CAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAG : 204507 118 : CysValGluArgIleLysTrpAspTrpLysAsnIleThrTyrAlaLysAspLysGluI : 137 !!:!!.!.! !|||!:! ! ||||||! !.!. !||| ! !:!!:!!::! !| SerLeuAsnThrIleArgArgAspTrpIleGluAlaThr---AspGluAsnArgLeuI 204508 : AGTTTGAACACCATCAGACGCGACTGGATAGAGGCTACG---GATGAAAATCGGTTGA : 204564 138 : leMetIleThrTyrAlaAsnPheGlyArgLysLeuValValValCysThrPhePheMe : 156 ||.!. !:!! ! |||!!..!!||||||!:!:!!:!!:!!:!!....!! ! !|| lePheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMe 204565 : TTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTAT : 204621 157 : tTyrSerGlyPheAlaPheTyrTyrIleAlaIleProIleSerValGlyArgValLys : 175 ||||.!!||| ! !! !||| ! !:!!|||:!:! ! !|||! !:!! ! tTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleVal 204622 : GTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTA : 204678 176 : Thr<->AspAsnLeuThrPheIleProLeuValPheProPheSerArgPheIleValA : 194 ||| ||||||:!!|||.!.! |||||| !! !||| !! ... : ThrProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePheA 204679 : ACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttcttta : 204738 195 : spThrArgTyrSerProThrAsnGluIleValPheSerIleGlnLeuMetAlaGlyAl : 213 :: !!:! !||||||!.! !!||||||||||||! !:!:|||:!!||||||||| snGluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPh 204739 : acGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTT : 204795 214 : aLeuMetHisGlyIleThrSerAlaAlaCysSerLeuValAlaThrPheAlaValHis : 232 !:!!! :!!!.!:!!! !|||!.!.!!|||.!!:!! !||| !|||!.!:!!||| eValThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHis 204796 : TGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCAC : 204852 233 : AlaCysGlyGlnMetGlnValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgL : 252 ||||||.!!..!:!!::!:!!|||:!!||| !:!!.!. |||:!:||| ! ! AlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAlaA 204853 : GCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCGG : 204912 253 : euAspMetAspGluArgLeuAspGlyArgIleAlaAspValIle : 266 ! ! !!: !! !:!! !! !!!:!|||||||||:!!:!! spMetThrGluThrLeuValHisArgLysIleAlaAspIleVal 204913 : ACATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTGTT : 204956 vulgar: AfOr20 59 266 . KQ414889.1 204335 204956 + 269 M 71 213 G 1 0 M 45 135 G 0 3 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204336 204956 269 + . gene_id 17 ; sequence AfOr20 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204336 204956 . + . KQ414889.1 exonerate:protein2genome:local exon 204336 204956 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 204336 204956 269 + . alignment_id 17 ; Query AfOr20 ; Align 204336 60 213 ; Align 204549 132 135 ; Align 204687 177 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 266 Query range: 304 -> 407 Target range: 280082 -> 280465 305 : ValIleMetGluSerLysSerAsnAspValThrSerValIleThrTyrValIleLeuL : 324 |||.!! !|||!!!:!!..!||||||!.!! !.!!..!.!!||||||:!!!!:!!!| ValPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheL 280083 : GTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTC : 280140 325 : euIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGl : 343 ||||||||||||||||||||:!!||||||.!!||||||||||||||||||:!!:!!|| euIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGl 280141 : TCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGA : 280197 344 : uGlu >>>> Target Intron 1 >>>> CysArgLysIleGlyGluIleSerT : 353 |::: 74 bp ||| !|||:!!|||! ! !!!!| uGln++ ++CysLeuLysValGlyValSerThrT 280198 : ACaggt.........................agTGCTTAAAAGTCGGCGTGTCAACTT : 280301 354 : yrMetIleGluTrpTyrArgLeuMetGlyAsnLysLysLeuPheCysIleLeuIleIl : 372 ||||||||!!:|||||||||||| |||!!.||| !! ! !! |||||||||.! yrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePh 280302 : ACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATT : 280358 373 : eAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnIleValAsnLeuSerIle : 391 !|||:!!||||||||||||||||||||||||||||||!!.|||:!!:!!||||||:!! eAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeu 280359 : CGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTA : 280415 392 : SerThrPheThrAspValValLysThrAlaValThrTyrLeuAsnVal : 407 |||!:!||| !..!||| !! ! ! !:!!:!!|||! !:!!:!! SerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280416 : AGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: AfOr20 304 407 . KQ414889.1 280082 280465 + 266 M 40 120 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280083 280465 266 + . gene_id 18 ; sequence AfOr20 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280083 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280083 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280083 280465 266 + . alignment_id 18 ; Query AfOr20 ; Align 280083 305 120 ; Align 280277 345 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 254 Query range: 181 -> 274 Target range: 202682 -> 203155 182 : IleProLeuValPheProPheSerArgPheIleValAspThrArgTyrSerProThrA : 201 :!! !:!!..!||| !!|||||| !!||||||:!!|||..!||||||||||||..!| LeuSerValThrPheSerPheSerGlyPheIleIleAspValArgTyrSerProValA 202683 : CTTAGTGTGACGTTCTCCTTCTCAGGATTTATCATTGATGTTAGATACAGTCCTGTGA : 202740 202 : snGluIleValPheSerIleGlnLeuMetAlaGlyAlaLeuMetHisGlyIleThrSe : 220 |||||||| !!|||||||||!:!:!!:!:|||! ! !|||!!:||||||:!!||| snGluIlePhePheSerIleArgIleValAlaValIleLeuIleHisGlyValThrVa 202741 : ACGAGATCTTCTTCTCGATTCGAATCGTAGCTGTCATCCTAATTCACGGTGTCACTGT : 202797 221 : rAlaAlaCysSerLeuValAlaThrPheAlaValHisAlaCysGlyGlnMetGlnVal : 239 !!.!||||||!!!|||..!||| !||||||||||||! !||||||||||||.!.||| lGlyAlaCysCysLeuThrAlaLeuPheAlaValHisAspCysGlyGlnMetAspVal 202798 : AGGAGCTTGTTGCTTGACAGCGTTGTTTGCGGTTCACGATTGCGGCCAGATGGACGTT : 202854 240 : LeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgLeuAspMet{A} >>>> Tar : 255 |||||| !||||||:!!||||||!!:|||||||||! !||||||{ } LeuMetAlaTrpLeuGluHisLeuMetAspGlyArgSerAspMet{L}++ 202855 : TTGATGGCCTGGCTGGAACATTTGATGGATGGTCGTTCGGATATG{A}gt........ : 202905 256 : get Intron 1 >>>> {sp}GluArgLeuAspGlyArgIleAlaAspValIleCy : 267 194 bp {! }:!!!.!:!!:!!||||||!!:!.! !:!!:!: ! -+{ys}GlnAsnValAsnGlyArgMetValThrIleValSe 202906 : .................tg{AG}CAAAATGTGAATGGCAGAATGGTGACCATCGTGAG : 203132 268 : sGlnHisValArgValLeuLys : 274 !||||||:!!|||:!!|||||| rGlnHisIleArgIleLeuLys 203133 : CCAACACATACGGATACTGAAA : 203155 vulgar: AfOr20 181 274 . KQ414889.1 202682 203155 + 254 M 73 219 S 0 1 5 0 2 I 0 190 3 0 2 S 1 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202683 203155 254 + . gene_id 19 ; sequence AfOr20 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 202683 202902 . + . KQ414889.1 exonerate:protein2genome:local exon 202683 202902 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 202903 202904 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 202903 203096 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 203095 203096 . + . intron_id 0 ; splice_site "TG" KQ414889.1 exonerate:protein2genome:local cds 203097 203155 . + . KQ414889.1 exonerate:protein2genome:local exon 203097 203155 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202683 203155 254 + . alignment_id 19 ; Query AfOr20 ; Align 202683 182 219 ; Align 203099 256 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 219 Query range: 307 -> 397 Target range: 272836 -> 273176 308 : GluSerLysSerAsnAspValThrSerValIleThrTyrValIleLeuLeuIleSerL : 327 |||!!!! ..!:!!||| !! !|||:!!! !|||||| !!!!::!!|||||||||: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 328 : euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGlu >>> : 345 !:|||||||||||||||||| ||||||||||||||||||:!!.!!|||..! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 346 : > Target Intron 1 >>>> CysArgLysIleGlyGluIleSerTyrMetIleG : 356 70 bp |||:::||||||||||||:!! !||||||! . ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 357 : luTrpTyrArgLeuMetGlyAsnLysLysLeuPheCysIleLeuIleIleAlaMetSe : 375 !.|||||| !||| |||!!. ! ! ||| ! ||||||||||||:!!! !! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 376 : rAsnSerSerIleLysLeuThrAlaGlyAsnIleValAsnLeuSerIleSerThrPhe : 394 !!:! ! !||||||:!!|||||||||!..|||||| !:!!|||:!:! !|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 395 : ThrAspVal : 397 !|||||| GlyAspVal 273166 : GGCGATGTA : 273176 vulgar: AfOr20 307 397 . KQ414889.1 272836 273176 + 219 M 37 111 5 0 2 I 0 66 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273176 219 + . gene_id 20 ; sequence AfOr20 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273176 219 + . alignment_id 20 ; Query AfOr20 ; Align 272837 308 111 ; Align 273018 345 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 213 Query range: 303 -> 397 Target range: 305088 -> 305783 304 : TyrValIleMetGluSerLysSerAsnAspValThrSerValIleThrTyrValIleL : 323 |||::: ..!!!:!!!:!!|||!:!:!!..!..!|||:!!! !||||||..!:!:| TyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValL 305089 : tatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGT : 305146 324 : euLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAl : 342 |||||||||||:!!||||||||||||||||||!!.||||||||||||||||||:!! euLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMe 305147 : TACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTAT : 305203 343 : aGluGlu >>>> Target Intron 1 >>>> CysArgLysIleGlyGluIleS : 352 !|||:!! 413 bp !!!!!!..:!!||| ! !! tGluLys++ ++SerSerSerValGlyLeuSerC 305204 : GGAAAAGgt.........................agAGCAGTAGCGTTGGATTATCCT : 305646 353 : erTyrMetIleGluTrpTyrArgLeuMetGlyAsnLysLysLeuPheCysIleLeuIl : 371 !!!:!||||||...||||||!.!||| ! !!!.! !! !! ! ! !|||||||| ysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleLeuIl 305647 : GTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTTTAAT : 305703 372 : eIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnIleValAsnLeuSer : 390 |||||||||||||!:!!:! !! !|||:!!!:!||||||!!.:!!|||:!!|||||| eIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysValValAspLeuSer 305704 : CATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTATCT : 305760 391 : IleSerThrPheThrAspVal : 397 :!!||||||||| !:!!||| LeuSerThrPheGlyAsnVal 305761 : TTATCCACATTTGGAAACGTG : 305783 vulgar: AfOr20 303 397 . KQ414889.1 305088 305783 + 213 M 41 123 5 0 2 I 0 409 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305089 305783 213 + . gene_id 21 ; sequence AfOr20 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305089 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305089 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305089 305783 213 + . alignment_id 21 ; Query AfOr20 ; Align 305089 304 123 ; Align 305625 345 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 208 Query range: 16 -> 204 Target range: 294654 -> 295227 17 : SerThrAspTyrGluTyrGlnLysAsnValAsnLeuSerIleGluTyrAsnArgTrpL : 36 !!!! !||| !! !!::!!!.:!!||| !|||:!!:!!||| !||| !!| ThrMetAspAspThrAsnArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgL 294655 : ACCATGGACGATACTAACAGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGC : 294712 37 : euLeuLysProMetGlyValTrpProAsnSerTyrThrLeuArgSerLys<-><->As : 53 |||||||||||!!:|||:!!|||||| !! !|||!:!! !! !|||||| ! euLeuLysProIleGlyLeuTrpProLeuIleTyrSerHisThrSerLysLeuAsnLy 294713 : TGTTGAAACCGATCGGTCTTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAA : 294769 54 : pTyrLeuTyrTrpLeuIleAsnIleValCysTyrSerLeuIleSerPheLeuPheIle : 72 !|||! :!!:!:! ! !||| ! ! !:!! !|||:!!!!.:!: sValLeuSerIleIleLeuIleAlaTrpCysThrLeuThrValLeuPheValLeuVal 294770 : AGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTG : 294826 73 : ProCysThrLeuTyrLeuPheLeuGluIleGluAspPheTyrGlyLysLeuLysGlnP : 92 |||||| !! !!:!! ! ! !!!.!.:!::::::: |||:!!|||! . ProCysGlyTyrPheCysValPheHisValLysAsnValLysLeuLysMetLysLeuL 294827 : CCATGCGGATACTTCTGTGTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTC : 294886 93 : heGlyProLeuIlePheCysMetMetAlaPheValLysTyrTyrTyrLeuIleAlaHi : 111 !.||||||:!!:!!!:!! !|||:!::!!.!.:!!!:!||| !! !|||:!! ! ! euGlyProValLeuTyrSerMetLeuSerMetLeuArgTyrSerCysLeuValLeuLy 294887 : TGGGTCCGGTACTATACTCTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAA : 294943 112 : sLysThrAspIleArgGluCysValGluArgIleLysTrpAspTrpLysAsnIleThr : 130 ! ! !!! .!!!:!.!.|||:!!||| !|||:!! ||||||||| ||| ! sThrProAlaPheLysHisCysIleGluAspIleGluAsnAspTrpLysLeuIleAsp 294944 : AACGCCCGCGTTCAAGCATTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGAT : 295000 131 : TyrAlaLysAspLysGluIleMetIleThrTyrAlaAsnPheGlyArgLysLeuValV : 150 !! !!:!! !!::!! !|||||||||! ! !!|||! !! !!:!!:!:!!..!| AsnProGluHisArgAlaIleMetIleLysAsnAlaMetValThrGlnArgMetThrV 295001 : AATCCGGAACACCGAGCGATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCG : 295060 151 : alValCysThrPhePheMetTyrSerGlyPheAlaPheTyrTyrIleAlaIleProIl : 169 ||!.!! !|||.!!.!.!!:||||||..! !.!! |||:!! ! !:::|||.. alAlaPheThrIleIleIleTyrSerSerAlaValSerTyrHisAlaIleValProPh 295061 : TCGCTTTTACTATTATAATCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatt : 295117 170 : eSerValGlyArgValLysThr<->AspAsnLeuThrPheIleProLeuValPhePro : 187 . ... :!!:!!!.! ! ||| !|||.!! ! !!||| !.!!||| ePheSerAsnAlaLeuGluAsnLysLysAsnAsnThrIleArgAlaLeuProIlePro 295118 : tttttcaaacgctTTGGAGAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCT : 295174 188 : PheSerArgPheIleValAspThrArgTyrSerProThrAsnGluIleVal : 204 !! !..!!!..!!||||||.!! !! !||||||||| !!||||||:!! GlyTyrGluLeuPheValAspAlaTyrSerSerProThrTyrGluIleIle 295175 : GGCTACGAGTTATTCGTAGACGCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: AfOr20 16 204 . KQ414889.1 294654 295227 + 208 M 36 108 G 0 6 M 124 372 G 0 3 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294655 295227 208 + . gene_id 22 ; sequence AfOr20 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294655 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294655 295227 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294655 295227 208 + . alignment_id 22 ; Query AfOr20 ; Align 294655 17 108 ; Align 294769 53 372 ; Align 295144 177 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 179 Query range: 18 -> 164 Target range: 299662 -> 300105 19 : AspTyrGluTyrGlnLysAsnValAsnLeuSerIleGluTyrAsnArgTrpLeuLeuL : 38 :!!|||.!.||||||!!.:!!:!!:!!! !!!!:!::!! !!:!|||||||||| AsnTyrHisTyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuL 299663 : AATTACCATTACCAAAATGACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGA : 299720 39 : ysProMetGlyValTrpProAsnSerTyrThrLeuArgSerLys<->AspTyrLeuTy : 56 |||||!!:|||||||||! ! ! !! !! ! !|||||| !!::!!||| ysProIleGlyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuVa 299721 : AACCTATCGGAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGT : 299777 57 : rTrpLeuIleAsnIle<->ValCysTyrSerLeuIleSerPheLeuPheIleProCys : 74 !! !:!!:!! !!!: :!!|||!:!||| !:!:! !|||:!! !!:!:|||! ! lSerIleValLeuMetThrIleCysPheSerSerLeuPhePheIleValLeuProSer 299778 : CTCGATCGTTCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCC : 299834 75 : ThrLeuTyrLeuPheLeuGluIleGluAspPheTyrGlyLysLeuLysGlnPheGlyP : 94 !! !|||:!!|||!!!! ! :!!..!.!.:!!! !|||:!!||| !||||||| GlyHisTyrIlePhePheAlaGluLysSerIleHisValLysValLysValPheGlyP 299835 : GGTCATTACATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTC : 299894 95 : roLeuIlePheCysMetMetAlaPheValLysTyrTyrTyrLeuIleAlaHisLysTh : 113 ||:!! !||||||:!: :!!.!!|||||||||! !|||||| ! !:!! roValGlyPheCysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGl 299895 : CGGTTGGTTTTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGG : 299951 114 : rAspIleArgGluCysValGluArgIleLysTrpAspTrpLysAsnIleThrTyrAla : 132 !! .!!..!..!|||:!!:!!!.!:!!:!! ! ||| ... ..! yAlaPheGluArgCysIleGlnHisValGluArgAsp---UnkUnkUnkUnkUnkUnk 299952 : CGCGTTCGAACGATGCATCCAACACGTCGAGAGAGAC---NNNNNNNNNNNNNNNNTT : 300005 133 : Lys--AspLysGluIleMetIleThrTyrAlaAsnPheGlyArgLysLeuValValVa : 151 ::!## !!::: !||||||:!:! !|||!.!!.!.!..!!|||!!.|||..!..!|| Arg##HisArgThrIleMetLeuArgTyrValThrMetSerArgAsnLeuThrThrVa 300006 : CGAATCATCGTACGATCATGTTGAGATACGTGACTATGAGCAGAAATCTGACGACCGT : 300064 152 : lCysThrPhePheMetTyrSerGlyPheAlaPheTyrTyr : 164 ||||.!! ! |||:!:|||:!!||| ! !! |||:!! lCysAlaValPheLeuTyrAlaGlyGlyMetSerTyrHis 300065 : GTGCGCCGTGTTTCTTTACGCAGGTGGTATGTCGTATCAC : 300105 vulgar: AfOr20 18 164 . KQ414889.1 299662 300105 + 179 M 34 102 G 0 3 M 9 27 G 0 3 M 64 192 G 1 0 M 7 21 F 0 2 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299663 300105 179 + . gene_id 23 ; sequence AfOr20 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299663 300105 . + . KQ414889.1 exonerate:protein2genome:local exon 299663 300105 . + . insertions 6 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local similarity 299663 300105 179 + . alignment_id 23 ; Query AfOr20 ; Align 299663 19 102 ; Align 299768 53 27 ; Align 299798 62 192 ; Align 299990 127 21 ; Align 300013 134 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 19 -> 137 Target range: 200514 -> 200878 20 : TyrGluTyrGlnLysAsnValAsnLeuSerIleGluTyrAsnArgTrpLeuLeuLysP : 39 |||.!. ||| ! ::: ! :!!!!!|||:!!!::|||||||||:!!|||||| TyrAsnGlyGlnHisSerLysValValCysIleGlnTrpAsnArgTrpIleLeuLysS 200515 : TACAACGGACAACACTCGAAAGTAGTTTGCATACAGTGGAATCGTTGGATCTTGAAAT : 200572 40 : roMetGlyValTrp----ProAsnSerTyrThrLeuArgSerLysAspTyrLeuTyrT : 57 !!|||!.!:!!|||#### !!||| !! !! !||||||!:!:!! !!! ! ! erMetAlaLeuTrp####ThrAsnProThrPheHisArgSerArgAsnAsnTyrThrA 200573 : CAATGGCTTTGTGGTTTGACAAATCCAACATTTCACCGGTCGAGAAATAACTACACTC : 200630 58 : rpLeuIleAsnIleValCysTyrSerLeuIleSerPheLeuPheIleProCysThrLe : 76 !!||||||!:! !||||||!! .!!|||!!:...:::......||| |||!:!|| rgLeuIleSerAlaValCys***GlyLeuMetGlyTyrPheLeuIleLeuCysSerLe 200631 : GGCTAATCAGTGCCGTTTGTTAAGGATTGATGggttactttttaatattatgcAGTTT : 200687 77 : uTyrLeuPheLeuGluIleGluAspPheTyrGlyLysLeuLysGlnPheGlyProLeu : 95 |:!!:!!||||||!!::!!|||:!!.!. ! !|||:!!||| !|||! !|||||| uHisValPheLeuAspValGluAsnIleLeuLysLysIleLysLeuPheValProLeu 200688 : ACACGTGTTTCTTGACGTAGAAAATATACTTAAAAAGATTAAATTGTTTGTTCCCCTA : 200744 96 : Ile<->PheCysMetMetAlaPheValLysTyrTyrTyrLeuIleAlaHisLysThrA : 114 :!! .!!|||:!! .!!.!!:!!|||! !:!!! ! !:!! !||| ! !| ValLeuLeuCysLeuAlaThrIleLeuLysCysHisLeuSerValLeuHisAspAspA 200745 : GTACTACTTTGCTTGGCTACGATTTTGAAGTGTCATTTGTCGGTACTTCATGATGACG : 200804 115 : spIleArgGluCysValGluArgIleLysTrpAspTrpLysAsn<->IleThrTyrAl : 132 ||! ! ! !|||! !|||!.!|||||||||!!:|||!:! !! :!!|||:!!! spThrTyrThrCysGlyGluHisIleLysTrpGluTrpArgTyrCysValThrHisAs 200805 : ATACTTACACGTGTGGCGAGCATATAAAATGGGAGTGGAGGTATTGTGTCACGCACGA : 200861 133 : aLysAspLysGluIle : 137 !:::||||||:::||| pGluAspLysLysIle 200862 : Cgaggataaaaaaatt : 200878 vulgar: AfOr20 19 137 . KQ414889.1 200514 200878 + 178 M 24 72 F 0 4 M 53 159 G 0 3 M 32 96 G 0 3 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 200515 200878 178 + . gene_id 24 ; sequence AfOr20 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 200515 200878 . + . KQ414889.1 exonerate:protein2genome:local exon 200515 200878 . + . insertions 6 ; deletions 0 ; frameshifts 4 KQ414889.1 exonerate:protein2genome:local similarity 200515 200878 178 + . alignment_id 24 ; Query AfOr20 ; Align 200515 20 72 ; Align 200591 44 159 ; Align 200753 97 96 ; Align 200852 129 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 343 -> 400 Target range: 238625 -> 238796 344 : GluCysArgLysIleGlyGluIleSerTyrMetIleGluTrpTyrArgLeuMetGlyA : 363 :!!||| !|||:!!||||||:!: !||||||! !!!:|||||| !||| !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 364 : snLysLysLeuPheCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuTh : 382 ..!:!! ||| !! |||||||||||| ! |||||| ! !:!!|||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 383 : rAlaGlyAsnIleValAsnLeuSerIleSerThrPheThrAspValValLysThr : 400 |||||||!!.:!!:!!:!!:!!|||:!!! !|||||| !|||||| !:!!||| rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThr 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 238796 vulgar: AfOr20 343 400 . KQ414889.1 238625 238796 + 135 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238796 135 + . gene_id 25 ; sequence AfOr20 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238796 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238796 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238796 135 + . alignment_id 25 ; Query AfOr20 ; Align 238626 344 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 270 -> 310 Target range: 224128 -> 224248 271 : ArgValLeuLysPheLeuAlaLeuThrGluLysThrLeuGlnGlnIleSerPheThrG : 290 !:! !! !!:!||||||.!!! !|||||||||.!!|||||||||:!!||||||..!| LysCysCysArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValG 224129 : AAATGTTGCAGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGG : 224186 291 : luPheLeuGlyCysThrLeuAspIleCysLeuValGlyTyrTyrValIleMetGluSe : 309 ||||||||||||||! !|||:!!|||||||||:!!|||||||||||||||:!!! ! ! luPheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleValValAr 224187 : AATTTCTAGGCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTGGTACG : 224243 310 : rLys : 310 !||| gLys 224244 : AAAG : 224248 vulgar: AfOr20 270 310 . KQ414889.1 224128 224248 + 134 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224129 224248 134 + . gene_id 26 ; sequence AfOr20 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224129 224248 . + . KQ414889.1 exonerate:protein2genome:local exon 224129 224248 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224129 224248 134 + . alignment_id 26 ; Query AfOr20 ; Align 224129 271 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 341 -> 397 Target range: 234979 -> 235147 342 : AlaGluGluCysArgLysIleGlyGluIleSerTyrMetIleGluTrpTyrArgLeuM : 361 .!!:!!:!!|||! !|||:!!||||||! ! !||||||! !||||||||||||||| ThrGlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuP 234980 : ACTCAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTAC : 235037 362 : etGlyAsnLysLysLeuPheCysIleLeuIleIleAlaMetSerAsnSerSerIleLy : 380 !!!.! ||| !! :!!:!!||||||:!!! !|||!:!! ! !||||| roHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLy 235038 : CTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAA : 235094 381 : sLeuThrAlaGlyAsnIleValAsnLeuSerIleSerThrPheThrAspVal : 397 |:!!|||||||||!!..!!:!!.!.:!!|||:!!:!!|||||| !|||||| sIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235095 : AATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: AfOr20 341 397 . KQ414889.1 234979 235147 + 134 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234980 235147 134 + . gene_id 27 ; sequence AfOr20 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234980 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234980 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234980 235147 134 + . alignment_id 27 ; Query AfOr20 ; Align 234980 342 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 342 -> 397 Target range: 277548 -> 277713 343 : GluGluCysArgLysIleGlyGluIleSerTyrMetIleGluTrpTyrArgLeuMetG : 362 ..!:!!|||!:!|||:!!||||||:!: !||||||! .!.|||||| !||| ! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 363 : lyAsnLysLysLeuPheCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLe : 381 !!!. ! ! ||| !! :!!|||||||||:!!! |||!:! ||||||:: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 382 : uThrAlaGlyAsnIleValAsnLeuSerIleSerThrPheThrAspVal : 397 :|||||||||...::::::...:::|||:!:! !|||||| !|||||| eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspVal 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTA : 277713 vulgar: AfOr20 342 397 . KQ414889.1 277548 277713 + 129 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277713 129 + . gene_id 28 ; sequence AfOr20 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277549 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277713 129 + . alignment_id 28 ; Query AfOr20 ; Align 277549 343 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 343 -> 397 Target range: 264723 -> 264885 344 : GluCysArgLysIleGlyGluIleSerTyrMetIleGluTrpTyrArgLeuMetGlyA : 363 :!!|||!:!|||:!!||||||:!: !|||||| .!.|||||| !||| !! GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 364 : snLysLysLeuPheCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuTh : 382 !. ! ! ||| ! |||||||||||| !! |||!:! ! !.!!|||!!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 383 : rAlaGlyAsnIleValAsnLeuSerIleSerThrPheThrAspVal : 397 |||||||!!.|||:!!:!!:!!|||!!:! !||||||!:!|||||| rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: AfOr20 343 397 . KQ414889.1 264723 264885 + 122 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264885 122 + . gene_id 29 ; sequence AfOr20 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264885 122 + . alignment_id 29 ; Query AfOr20 ; Align 264724 344 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 347 -> 397 Target range: 206251 -> 206401 348 : IleGlyGluIleSerTyrMetIleGluTrpTyrArgLeuMetGlyAsnLysLysLeuP : 367 :!:||| !! !|||! !! !:!:.!.|||||||||||| ..!!.. ! !! !! ValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgS 206252 : GTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCT : 206309 368 : heCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnIl : 386 ! ||||||||||||||||||||||||! ! !!||||||||||||||||||!!.!! erMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMe 206310 : CTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAAT : 206366 387 : eValAsnLeuSerIleSerThrPheThrAspVal : 397 : !!.!.:!!|||:!!:!!!:!|||||||||||| tPheGluMetSerLeuAlaSerPheThrAspVal 206367 : GTTCGAAATGTCTTTAGCTAGTTTCACCGATGTA : 206401 vulgar: AfOr20 347 397 . KQ414889.1 206251 206401 + 118 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206252 206401 118 + . gene_id 30 ; sequence AfOr20 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206252 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206252 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206252 206401 118 + . alignment_id 30 ; Query AfOr20 ; Align 206252 348 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 307 -> 344 Target range: 301686 -> 301797 308 : GluSerLysSerAsnAspValThrSerValIleThrTyrValIleLeuLeuIleSerL : 327 |||!!!:!!!:!!:!|||..!! !:!!:!!:!:|||!:! !!! !||||||! |||! GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerP 301687 : GAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGT : 301744 328 : euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGlu : 344 !!|||||||||||||||||||||||||||||||||||||||:!!:!!|||:!! heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln 301745 : TCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAG : 301797 vulgar: AfOr20 307 344 . KQ414889.1 301686 301797 + 112 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301687 301797 112 + . gene_id 31 ; sequence AfOr20 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301687 301797 112 + . alignment_id 31 ; Query AfOr20 ; Align 301687 308 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 305 -> 344 Target range: 234797 -> 234914 306 : IleMetGluSerLysSerAsnAspValThrSerValIleThrTyrValIleLeuLeuI : 325 |||:!: |||:!!..!!!.... ...::: !:!!|||||||||:!!! !: IleLeuThrSerGlnGluLysSerLysGluLysLeuAlaSerTyrValIleValTyrV 234798 : ATTTTAACTTCTCAGGAAAAgtcgaaggaaaaattagCTTCATACGTCATCGTGTACG : 234855 326 : leSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGl : 344 !:|||:!!||||||||||||||||||||||||||||||||||||! :!!.!!|||:! alSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGl 234856 : TGTCCATGACATTtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGCA : 234912 345 : u : 344 ! n 234913 : G : 234914 vulgar: AfOr20 305 344 . KQ414889.1 234797 234914 + 107 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234798 234914 107 + . gene_id 32 ; sequence AfOr20 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234798 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234798 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234798 234914 107 + . alignment_id 32 ; Query AfOr20 ; Align 234798 306 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 307 -> 341 Target range: 291368 -> 291470 308 : GluSerLysSerAsnAspValThrSerValIleThrTyrValIleLeuLeuIleSerL : 327 |||!!!:!!|||!:!||| !! !.!!:!!:!!|||||||||! !||||||! !|||! GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 328 : euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleVal : 341 !!||||||||||||.!.||||||||||||:!!||||||:!!:!! heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeu 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTT : 291470 vulgar: AfOr20 307 341 . KQ414889.1 291368 291470 + 106 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 291470 106 + . gene_id 33 ; sequence AfOr20 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 291369 291470 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291470 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 291470 106 + . alignment_id 33 ; Query AfOr20 ; Align 291369 308 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 342 -> 397 Target range: 283273 -> 283438 343 : GluGluCysArgLysIleGlyGluIleSerTyrMetIleGluTrpTyrArgLeuMetG : 362 ..!:!!|||!:!|||:!!||||||:!: !||||||! .!.! !!:! !||| ! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 363 : lyAsnLysLysLeuPheCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLe : 381 !!!. ! ! ||| !! :!!|||||||||:!!! |||!:! ||||||:: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 382 : uThrAlaGlyAsnIleValAsnLeuSerIleSerThrPheThrAspVal : 397 :||||||......::::::...::!||| ! !|||||| !|||||| eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspVal 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTA : 283438 vulgar: AfOr20 342 397 . KQ414889.1 283273 283438 + 101 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283438 101 + . gene_id 34 ; sequence AfOr20 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283438 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283438 101 + . alignment_id 34 ; Query AfOr20 ; Align 283274 343 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1155 Query range: 0 -> 393 Target range: 303127 -> 305783 1 : MetHisPheSerIleArgAsnProIleAsn<->GluProArgAsnProAsnTyrGluL : 19 ||||||.!!|||!!:|||.!.! !|||:!! :!!||||||||| !||||||:!!| MetHisLeuSerMetArgGluGlnIleAspArgLysProArgAsnLeuAsnTyrLysL 303128 : ATGCATCTCTCTATGCGAGAGCAGATCGATCGGAAACCGCGGAATTTGAATTACAAGA : 303185 20 : ysAspIleAlaTyrValThrLysTyrAsnLysTrpValLeuSerCysIleGlyIleTr : 38 ||||||||!.!||||||||||||:!!!:!||||||:!!|||!.!! !:!!|||||||| ysAspIleValTyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTr 303186 : AAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTG : 303242 39 : pProIleValLeuLysAsnThrAsnLysIleLeuProLysIleValIleGlyIleAsn : 57 |||| !|||||| ! .!.||| !.!!||||||||||||..!||||||:!!!:! pProAlaValLeuAspGluThrAlaGlyPheLeuProLysIleThrIleGlyLeuSer 303243 : GCCAGCCGTGTTGGACGAAACCGCAGGATTCCTACCAAAAATCACCATTGGACTCAGT : 303299 58 : AsnLeuLeuCysSerPheIleLeuIleGlnSerAlaLeuHisIleIleTyrGluGluL : 77 ||||||:!! ! !|||! !:!!|||! !!!! !||||||||||||!:!|||:!!| AsnLeuValLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnL 303300 : AATTTGGTTCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAA : 303359 78 : ysAspValLeuLeuArgLeuLysIleLeuGlyLeuIlePhePheSerLeuIleSerLe : 96 |||||..!:!!:!!|||||||||:!!!!!||||||:!: !|||!!!||||||||||| ysAspThrIleIleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLe 303360 : AGGATACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTT : 303416 97 : uMetLysTyrTrpAlaLeuThrIleHisLysProGluIleLysTyrCysIleGluGln : 115 |||||||||||||||||||.!!! !..||||||..!|||||| ! |||||||||:!! uMetLysTyrTrpAlaLeuAlaThrArgLysProArgIleLysGluCysIleGluGlu 303417 : GATGAAGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAG : 303473 116 : ValGlnLeuAspTrpLysGln >>>> Target Intron 1 >>>> ValGluMe : 125 |||||| !|||||||||:!! 938 bp |||||| ValGlnSerAspTrpLysGlu++ ++ValGluSe 303474 : GTGCAAAGTGATTGGAAAGAGgt.........................agGTGGAATC : 304441 126 : tGluAsnAspArgGluLeuMetLeuLysTyrGlyMetLeuGlyArgAsnLeuThrIle : 144 !..|||||||||:!!|||||||||||||||...:!!|||||||||||||||||| rLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIle 304442 : TCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATA : 304498 145 : TyrSerIleLeuPheMetTyrIleGlySerIleThrTyrMetSerIleThrGlnTyrA : 164 !!!! !:!!|||||||||! !|||.!!! !! !||| !!!:!!! !|||!:!| IleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheA 304499 : ATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCG : 304558 165 : laMetGlyLeuGlnIleAsnGluHisGlnSerAsnGlnThrIleArgValLeuIleTy : 183 ||! ||| ! ! :!::!!|||:!! |||!::||||||!:! !|||:!!|| laThrGlyThrTyrValAspGluTyr------AsnArgThrIleLysProLeuValTy 304559 : CGACCGGAACGTATGTGGATGAGTAT------AATCGTACGATTAAACCGCTCGTCTA : 304609 184 : rProThrTyrGly<-><->TyrAsnIleGlnLysSerProIleTyrGluIleIleTyr : 200 ||||||||||.!! !:!:!!:!!|||! !|||||||||||||||:!::!!||| rProThrTyrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyr 304610 : TCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTAC : 304666 201 : GlyIleGlnPheMetCysGlyTyrValValAspThrIleThrSerGlyAlaCysGlyL : 220 !:!!!!.! !|||||||||||||||:!! !!:!!||||||:!!||||||||||||| PheValHisCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyL 304667 : TTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGAT : 304726 221 : euAlaAlaLeuPheValThrHisAlaCysGlyGlnIleAspIleIleThrSerArgLe : 239 ||||||||||||||!.!|||||||||||||||||||||||||||:!!! !|||||||| euAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLe 304727 : TAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATT : 304783 240 : uAspAspIleValAlaGlyGlnPheTyrAsnLysAsnLeuSerProAsnIleArgLeu : 258 |! !|||:!!||| !.!!:!! :!!:::! !..! !:!!! !|||||| uGlyAspLeuValAsnSerLys---------GluSerSerAspLeuAspLysArgLeu 304784 : GGGTGATCTTGTCAACAGCAAA---------GAATCATCTGATTTAGATAAACGATTA : 304831 259 : MetAlaIleIleLysHisHisIleArgIleLeu{Ly} >>>> Target Intron : 270 !!:! !|||:!!:!!||||||:!:|||||||||{!:} 70 bp IleGluIleValGluHisHisLeuArgIleLeu{Ar}++ 304832 : ATAGAAATTGTTGAGCATCATTTGCGAATTTTA{AG}gt................... : 304871 271 : 2 >>>> {s}PheSerAlaValValGluThrValLeuGlnGluValPhePheLeuGl : 286 {!}|||||||||:!!|||:!!||||||||||||||||||! !|||||||| ++{g}PheSerAlaIleValGlnThrValLeuGlnGluValCysPheLeuGl 304872 : ......ag{A}TTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTTCTTGGA : 304985 287 : uPheAlaGlySerThrPheValIleCysLeuLeuGluTyrTyrCysIleAla >>>> : 304 |||| !|||||||||!!.:!!|||||||||||||||||||||||||||.!! uPheIleGlySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysIleThr++ 304986 : ATTCATTGGTTCTACCTTACTGATATGTCTACTTGAATACTACTGTATAACGgt.... : 305041 305 : Target Intron 3 >>>> AspTrpGluGlnLysAsnIleIleSerLeuThrSe : 315 62 bp |||||||||...!..|||! !:!!|||||||||!! ++AspTrpGluSerSerAsnThrValSerLeuThrTh 305042 : .....................agGATTGGGAGAGCAGTAATACCGTTAGTCTTACAAC : 305134 316 : rTyrIleLeuLeuLeuIleSerLeuThrPheAsnMetPheLeuLeuCysTyrIleGly : 334 !|||! !:!!||||||||||||:!!|||||||||!!:|||:!!||||||||||||||| rTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGly 305135 : ATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGT : 305191 335 : AspLeuLeuIleGlnLys >>>> Target Intron 4 >>>> SerGlyAsnIl : 344 !!::!!|||!!::!!||| 413 bp |||.!!!:!:! GluIleLeuMetGluLys++ ++SerSerSerVa 305192 : GAGATTCTTATGGAAAAGgt.........................agAGCAGTAGCGT : 305634 345 : eGlyValValValPheMetIleAspTrpPheHisLeuProThrLysThrIleGlnAsn : 363 !|||:!! ! !|||||||||..!|||!:!|||||||||||||||||||||!!...! lGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGly 305635 : TGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGT : 305691 364 : LeuIleLeuIleMetAlaMetSerAsnAsnProAlaLysLeuThrValGlyArgIleV : 383 ||||||||||||!!:|||||||||!:!||||||||||||:!!!:!!.!|||!:!:!!| LeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysValV 305692 : CTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAG : 305751 384 : alAspLeuSerLeuSerThrPheGlyAsnVal : 393 |||||||||||||||||||||||||||||||| alAspLeuSerLeuSerThrPheGlyAsnVal 305752 : TTGATTTATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: AfOr56 0 393 . KQ414889.1 303127 305783 + 1155 M 10 30 G 0 3 M 112 336 5 0 2 I 0 934 3 0 2 M 50 150 G 2 0 M 13 39 G 0 6 M 59 177 G 3 0 M 20 60 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 37 111 5 0 2 I 0 409 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303128 305783 1155 + . gene_id 1 ; sequence AfOr56 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303128 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303128 303496 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304868 . + . insertions 6 ; deletions 5 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 2 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303128 305783 1155 + . alignment_id 1 ; Query AfOr56 ; Align 303128 1 30 ; Align 303161 11 336 ; Align 304435 123 150 ; Align 304585 175 39 ; Align 304630 188 177 ; Align 304807 250 60 ; Align 304940 271 99 ; Align 305101 304 111 ; Align 305625 341 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 521 Query range: 15 -> 393 Target range: 217153 -> 219671 16 : AsnTyrGluLysAspIleAlaTyrValThrLysTyrAsnLysTrpValLeuSerCysI : 35 .!.|||||||||:::||| !! !:!!!::|||:::|||:!!|||!.! ! GluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProM 217154 : GAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGA : 217211 36 : leGlyIleTrpProIleValLeuLysAsnThr<-><->AsnLysIleLeuProLysIl : 52 !:|||:!!||||||! ! !! !! !.!||| ...||||||||| !|||:! etGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLe 217212 : TGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACT : 217268 53 : eValIleGlyIleAsnAsnLeuLeuCysSerPheIleLeuIleGlnSerAlaLeuHis : 71 ::!!! !!.!:!! ! !! !||| ||||||:!!!!!:!!! !!!!:!!:!!:!! uIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyr 217269 : GATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTAC : 217325 72 : IleIleTyrGluGluLysAspValLeuLeuArgLeuLysIleLeuGlyLeuIlePheP : 91 :!:.!! !|||! :!!|||:!!! ! !!:!||||||:!:!!!|||! !:!:.!!| ValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIleP 217326 : GTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCT : 217385 92 : heSerLeuIleSerLeuMetLysTyrTrpAlaLeuThrIleHisLysProGluIleLy : 110 ||!!!:!!!!::!!!!!:!:||||||!:::!!|||! !:!!|||||| !!!!:|||:: heCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleAr 217386 : TCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCG : 217442 111 : sTyrCysIleGluGlnValGlnLeuAspTrpLysGlnValGluMetGluAsnAspArg : 129 : ! |||:!:..!::!:!!:!!! !||||||!:!.!.|||..! |||!!.|||||| gGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArg 217443 : CGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGG : 217499 130 : GluLeuMetLeuLysTyrGlyMetLeuGlyArgAsnLeuThrIleTyrSerIleLeuP : 149 ||| !|||:!! ! !!!.!! !!!||||||!!.|||..!:!! !!!!! !!!!| GluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPheP 217500 : GAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCT : 217559 150 : heMetTyrIleGlySerIleThrTyrMetSerIleThrGlnTyrAlaMetGlyLeuGl : 168 ||||||||! !||| ::: ||| ! !! !! ! !::!:!!||| ! heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIl 217560 : TCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAAT : 217616 169 : nIleAsnGluHisGlnSerAsnGlnThrIleArgValLeuIle<->TyrProThrTyr : 186 :!!:::|||:!! !!:! ! !|||! !:!!:!!.!! !:! !!! !||| eLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyr 217617 : TCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTAT : 217673 187 : GlyTyrAsnIleGlnLysSerProIleTyrGluIleIleTyrGlyIleGlnPheMetC : 206 ! !:!!! !!:: ! !!!|||! !!||||||:!:!:! !:!!|||!!.!!:. IleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleA 217674 : ATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCG : 217733 207 : ysGlyTyrValValAspThrIleThrSerGlyAlaCysGlyLeuAlaAlaLeuPheVa : 225 .!||| !:!!:!! !! !|||||||||!.!||||||.!!||||||||| !|||!. laGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAl 217734 : CTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGC : 217790 226 : lThrHisAlaCysGlyGlnIleAspIleIleThrSerArgLeuAspAspIleValAla : 244 !..!||||||||||||||||||!!::!::!:! !!:! !!|||.!. !!:!!:!!! ! aValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAsp 217791 : GGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGAC : 217847 245 : GlyGlnPheTyrAsnLysAsnLeuSerProAsnIleArgLeuMetAlaIleIleLysH : 264 |||::! :!!! !!:! !!!! !:!! !|||:!! !::!|||:!!!..! GlyArg---AlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerG 217848 : GGTAGA---GCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTC : 217904 265 : isHisIleArgIleLeuLysPheSerAlaValValGluThrValLeuGlnGluValPh : 283 !.|||:!!||||||||||||! ! ! ! !:!!! !! !! !..! !|| lnHisValArgIleLeuLysCysValArg***IleValGlyGluCysSerLeuCysPh 217905 : AACACGTTCGGATATTAAAGTGTGTAAGATAGATCGTTGGTGAATGCTCGCTTTGTTT : 217961 284 : ePheLeuGluPheAla{Gl} >>>> Target Intron 1 >>>> {y}SerThr : 291 |!::!!!:!! !{ } 1305 bp {!}... eTrpPheGlnGlyMet{Ly}-+ ++{s}LysTyr 217962 : TTGGTTTCAGGGGATG{AA}tt.........................ag{a}aaatat : 219290 292 : PheValIleCysLeuLeuGluTyrTyrCysIleAlaAspTrpGluGlnLysAsnIleI : 311 ... ::: ||| :::::: !!!:|||:!!..!!!.:!!:!!! IleTyrValAsnLeuTyrLysPheGluTyrGln***GluTrpLysSerAsnAspValT 219291 : atttacgttaatttgtataaatttgaatatcaatAGGAATGGAAATCGAATGATGTAA : 219350 312 : leSerLeuThrSerTyrIleLeuLeuLeuIleSerLeuThrPheAsnMetPheLeuLe : 330 ||| !..!!!!||||||:!!||||||||||||||||||||||||:::|||:::.. hrSerAlaValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePh 219351 : CGAGTGCAGTGACATACATCATTCTACTTATATCCCTcactttcaacattttcatatt : 219407 331 : uCysTyrIleGlyAspLeuLeuIleGlnLys >>>> Target Intron 2 >>>> : 341 .||||||||||||!!::!!:!! !:!!:!: 73 bp eCysTyrIleGlyGluIleValAlaGluGln++ 219408 : ttgctaCATAGGAGAGATCGTTGCTGAACAggt......................... : 219442 342 : SerGlyAsnIleGlyValValValPheMetIleAspTrpPheHisLeuProThrLy : 359 !! ...|||||| ::: !!:!||||||!!:|||!:!!..||| !! !|| ++CysArgLysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLy 219443 : agTGtaggaaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAA : 219567 360 : sThrIleGlnAsnLeuIleLeuIleMetAlaMetSerAsnAsnProAlaLysLeuThr : 378 |! !! ! !:!!|||! !!!:||||||||||||::! !! !||||||||| sLysLysLeuTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThr 219568 : GAAAAAGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACA : 219624 379 : ValGlyArgIleValAspLeuSerLeuSerThrPheGlyAsnVal : 393 !.!|||!.!!!:|||!!:||||||:!!||||||||| !:!!||| AlaGlyAsnMetValGluLeuSerIleSerThrPheThrAspVal 219625 : GCCGGAAATATGGTCGAATTGTCTATCAGCACTTTTACCGACGTG : 219671 vulgar: AfOr56 15 393 . KQ414889.1 217153 219671 + 521 M 30 90 G 0 6 M 137 411 G 0 3 M 64 192 G 1 0 M 41 123 S 0 2 5 0 2 I 0 1301 3 0 2 S 1 1 M 51 153 5 0 2 I 0 69 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217154 219671 521 + . gene_id 2 ; sequence AfOr56 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217154 217980 . + . KQ414889.1 exonerate:protein2genome:local exon 217154 217980 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 217981 217982 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 217981 219285 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219284 219285 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219286 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219286 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217154 219671 521 + . alignment_id 2 ; Query AfOr56 ; Align 217154 16 90 ; Align 217250 46 411 ; Align 217664 183 192 ; Align 217856 248 123 ; Align 219287 290 153 ; Align 219513 341 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 413 Query range: 15 -> 302 Target range: 226909 -> 228172 16 : AsnTyrGluLysAspIleAlaTyrValThrLysTyrAsnLysTrpValLeuSerCysI : 35 :!!|||:!!:!! !!:!: ! !! !:!!! |||:::|||:!!|||!.! : AspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProL 226910 : GACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCAC : 226967 36 : leGlyIleTrpProIleValLeuLysAsnThr<-><->AsnLysIleLeuProLysIl : 52 !!|||||||||||| !! !|||!:!:!! ...!:! !!!! !! !:! euGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLe 226968 : TCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTT : 227024 53 : eValIleGlyIleAsnAsnLeuLeuCysSerPheIleLeuIleGlnSerAlaLeuHis : 71 ::!! ! !:!! ! !! !||| |||||| |||:!!..!|||!.!|||:!! uMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyr 227025 : GATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTAC : 227081 72 : IleIleTyrGluGluLysAspValLeuLeuArgLeuLysIleLeuGlyLeuIlePheP : 91 :!::!! |||! !|||! !!.!! ! !! !||||||!!::!!|||! !!!:! !| ValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerP 227082 : GTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCT : 227141 92 : heSerLeuIleSerLeuMetLysTyrTrpAlaLeuThrIleHisLysProGluIleLy : 110 ||! ! !!!:||||||:!:||||||! !||||||.!!|||:!! !!!:||| hePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLe 227142 : TCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCT : 227198 111 : sTyrCysIleGluGlnValGlnLeuAspTrpLysGlnValGluMetGluAsnAspArg : 129 ! |||:!!|||!:!:!!:!!! !|||||||||.!.:!!..! !.!.|||||| uGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArg 227199 : CGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGA : 227255 130 : GluLeuMetLeuLysTyrGlyMetLeuGlyArgAsnLeuThrIleTyrSerIleLeuP : 149 .!.:!!|||:!!! !|||!.! ! !||||||!!.|||! !! ! !!!!! !!!| AsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPheP 227256 : AACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTT : 227315 150 : heMetTyrIleGlySerIleThrTyrMetSerIleThrGlnTyrAlaMetGlyLeuGl : 168 ||:!:!:!! ... ::: ::: ! !:!!..!! ! ! ||| ! heValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerVa 227316 : TCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGT : 227372 169 : nIleAsnGluHisGlnSerAsnGlnThrIleArgVal<->LeuIleTyrProThrTyr : 186 !!..||| !! !!:!:!!... !|||!:!:!! !!! !:!|||! ! ! lAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIle 227373 : TGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATC : 227429 187 : GlyTyrAsnIleGlnLysSerProIleTyrGluIleIleTyrGlyIleGlnPheMetC : 206 ! !:!!:!!!:: ! ||||||.!! !!||||||.!!!:!..!:!!||||||:!: IleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValT 227430 : ATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAA : 227489 207 : ysGlyTyrValValAspThrIleThrSerGlyAlaCysGlyLeuAlaAlaLeuPheVa : 225 ||| !|||:!! !! !:!!||||||!.!||||||.!!:!!|||||||||.!!!. hrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAl 227490 : CAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGC : 227546 226 : lThrHisAlaCysGlyGlnIleAspIleIleThrSerArgLeuAspAspIleValAla : 244 !..!|||||||||||||||!!:!!::!::!:..!||| !!|||! !!:!::!!! ! aValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAsp 227547 : GGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGAC : 227603 245 : GlyGlnPheTyrAsnLysAsnLeuSerProAsnIleArgLeuMetAlaIleIleLysH : 264 |||::! :!!! !!:! !!!!! !:!! !|||:!! ::!|||:!!! | GlyArg---AlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValThrH 227604 : GGCAGA---GCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTC : 227660 265 : isHisIleArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheSe : 272 |||||:!!|||||||||{!!} 396 bp {.}||| isHisValArgIleLeu{As}++ ++{n}PheLe 227661 : ACCACGTTCGAATATTG{AA}gt.........................ag{C}TTTCT : 228080 273 : rAlaValValGluThrValLeuGlnGluValPhePheLeuGluPheAlaGlySerThr : 291 !|||:!!:!!|||! !..!:!!|||:!!:!! !|||:!!|||||| !|||!!!||| uAlaLeuIleGluLysThrMetGlnGlnIleAlaPheValGluPheLeuGlyCysThr 228081 : GGCCCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGTACA : 228137 292 : PheValIleCysLeuLeuGluTyrTyrCysIle : 302 .!.:!!:!:||||||:!!||||||||| !||| IleIleLeuCysLeuIleGluTyrTyrIleIle 228138 : ATAATTCTGTGCCTCATCGAGTATTACATCATA : 228172 vulgar: AfOr56 15 302 . KQ414889.1 226909 228172 + 413 M 30 90 G 0 6 M 135 405 G 0 3 M 66 198 G 1 0 M 22 66 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226910 228172 413 + . gene_id 3 ; sequence AfOr56 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226910 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226910 227679 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228172 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228172 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226910 228172 413 + . alignment_id 3 ; Query AfOr56 ; Align 226910 16 90 ; Align 227006 46 405 ; Align 227414 181 198 ; Align 227612 248 66 ; Align 228077 271 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 378 Query range: 15 -> 343 Target range: 232438 -> 234923 16 : AsnTyrGluLysAspIleAlaTyrValThrLysTyrAsnLysTrpValLeuSerCysI : 35 ||| ! !::!||| !! !||| !! !:!! |||:::||| !!|||!!! ! AsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProM 232439 : AACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGA : 232496 36 : leGlyIleTrpProIleValLeuLysAsnThr<-><->AsnLysIleLeuProLysIl : 52 !:||| !|||||| !||| !:!!!.!:!! .!.:!!:!!||| !!|||:! etGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLe 232497 : TGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACT : 232553 53 : eValIleGlyIleAsnAsnLeuLeuCysSerPheIleLeuIleGlnSerAlaLeuHis : 71 ::!!! ! !! ! !:!!! !||| ! !! ! :!!:!!! !!!! !||| ! uLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPhe 232554 : GTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTC : 232610 72 : IleIleTyrGluGluLysAspValLeuLeuArgLeuLysIleLeuGlyLeuIlePheP : 91 |||:!:!:!|||!!:! !..!:!! ! !|||:!!||| !:!!|||! !!!: ! IleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerH 232611 : ATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTC : 232670 92 : heSerLeuIleSerLeuMetLysTyrTrpAlaLeuThrIleHisLysProGluIleLy : 110 !! !|||!!:.!! !:!!!!.|||!! ..!||| ! ! ! ! !!!:||| isPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLe 232671 : ACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCT : 232727 111 : sTyrCysIleGluGlnValGlnLeuAspTrpLysGlnValGluMetGluAsnAspArg : 129 ||||||:!:|||||||||:!!! !||||||::!.!.|||:!!! ! !!||| uTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArg 232728 : CTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGT : 232784 130 : GluLeuMetLeuLysTyrGlyMetLeuGlyArgAsnLeuThrIleTyrSerIleLeuP : 149 !!:|||||||||||| !!!.!! |||||||||::::!!.!! ! !:!! !!!! AspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheC 232785 : GATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTT : 232844 150 : heMetTyrIleGlySerIleThrTyrMetSerIleThrGlnTyrAlaMetGly<->Le : 167 !|||:!!! !||| ! !:!! !! ! !:!!||| ! ! !|||.!! !! ysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPh 232845 : GCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTT : 232901 168 : uGlnIleAsnGluHisGlnSerAsnGlnThrIleArgValLeuIleTyrProThrTyr : 186 ! ! :!:....!..!....! !:::..! ! ! !! !! !:! !||| ! eTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLys 232902 : CTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAG : 232958 187 : GlyTyrAsnIleGlnLysSerProIleTyrGluIleIleTyrGlyIleGlnPheMetC : 206 ! :!!! !::! ||||||! !!||||||!!:!:!! !:!!|||! !:!:! LeuMetAspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuS 232959 : CTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCT : 233018 207 : ysGlyTyrValValAspThrIleThrSerGlyAlaCysGlyLeuAlaAlaLeuPheVa : 225 !|||!:!:!!|||:!!:!!:!!||| !|||||||||||||||!.!|||:!!.!.!. erGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAl 233019 : CCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGC : 233075 226 : lThrHisAlaCysGlyGlnIleAspIleIleThrSerArgLeuAspAspIleValAla : 244 !! !|||||||||||||||:!::!!:!::!:! !|||!:!|||||||||:!:|||! ! aMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAsp 233076 : GATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGAC : 233132 245 : GlyGlnPheTyrAsnLysAsnLeuSerProAsnIleArgLeuMetAlaIleIleLysH : 264 !.!:!! ! .!.:!!!..:!!:!!! !!.. !:!||| !|||:!::!!| AlaLysGlyGlnGluGluArgValAlaGlnArg---LysLeuGlyPheIleValGluH 233133 : GCGAAAGGGCAGGAGGAGAGAGTCGCGCAGAGG---AAGTTAGGTTTCATCGTGGAGC : 233189 265 : isHisIleArgIleLeuLysPheSerAla >>>> Target Intron 1 >>>> : 274 |||||:!:|||! !|||!:!!:!! !:!! 1315 bp isHisLeuArgThrLeuArgTyrLeuSer++ -+ 233190 : ATCATTTGCGTACATTAAGGTATTTGTCTgt.........................gg : 234532 275 : ValValGluThrValLeuGlnGluValPhePheLeuGluPheAlaGlySerThrPheV : 293 !:!!|||!.!|||:!!.!. !:!!! !.!.:!!|||!!.!.!|||!!!|||!!. AsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuValGlyCysThrLeuA 234533 : AATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACGTTGA : 234591 294 : alIleCysLeuLeuGluTyr{Ty} >>>> Target Intron 2 >>>> {r}Cy : 301 !!!:|||:!!|||||||||{!!} 180 bp { }|| snMetCysMetLeuGluTyr{**}-+ +-{*}Cy 234592 : ACATGTGCATGCTCGAGTAT{TA}tt.........................aa{A}TG : 234795 302 : sIleAlaAspTrpGluGlnLysAsnIleIleSerLeuThrSerTyrIleLeuLeuLeu : 320 |||| ! !! :!!:!!|||::: ...|||.!!||||||:!!:!!:!!! ! sIleLeuThrSerGlnGluLysSerLysGluLysLeuAlaSerTyrValIleValTyr 234796 : TATTTTAACTTCTCAGGAAAAgtcgaaggaaaaattagCTTCATACGTCATCGTGTAC : 234852 321 : IleSerLeuThrPheAsnMetPheLeuLeuCysTyrIleGlyAspLeuLeuIleGlnL : 340 :!:|||:!!|||||||||:::|||:::...||||||||||||!!: !|||! !:!!: ValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluG 234853 : GTGTCCATGACATTtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGC : 234912 341 : ysSerGlyAsn : 343 !! !|||::: lnValGlySer 234913 : AGGTAGGATCA : 234923 vulgar: AfOr56 15 343 . KQ414889.1 232438 234923 + 378 M 30 90 G 0 6 M 121 363 G 0 3 M 89 267 G 1 0 M 17 51 5 0 2 I 0 1311 3 0 2 M 26 78 S 0 2 5 0 2 I 0 176 3 0 2 S 1 1 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232439 234923 378 + . gene_id 4 ; sequence AfOr56 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232439 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232439 233218 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233219 233220 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233219 234533 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234532 234533 . + . intron_id 0 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 234534 234613 . + . KQ414889.1 exonerate:protein2genome:local exon 234534 234613 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234614 234615 . + . intron_id 2 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 234614 234793 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234792 234793 . + . intron_id 1 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 234794 234923 . + . KQ414889.1 exonerate:protein2genome:local exon 234794 234923 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232439 234923 378 + . alignment_id 4 ; Query AfOr56 ; Align 232439 16 90 ; Align 232535 46 363 ; Align 232901 167 267 ; Align 233168 257 51 ; Align 234534 274 78 ; Align 234795 301 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 363 Query range: 9 -> 299 Target range: 289696 -> 291224 10 : AsnGluProArgAsnProAsnTyrGluLysAspIleAlaTyrValThrLysTyrAsnL : 29 :!!...||| !||| !..!||||||! !|||||| !|||..! !:!!! ! AspArgProSerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysH 289697 : GATCGTCCGTCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCC : 289754 30 : ysTrpValLeuSerCysIleGlyIleTrpProIleValLeuLysAsnThrAsnLysIl : 48 ! |||:!!|||!.! ||||||!!:!::|||.!!|||!!!!....!.!!!:!!:! isTrpIleLeuLysProIleGlyMetTyrProPheValPheSerArgAlaSerArgAr 289755 : ATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACG : 289811 49 : eLeuProLysIleValIleGlyIleAsnAsnLeuLeuCysSer<-><-><->PheIle : 64 ! !! !! ! !:!: !:!:! ! :!!! !|||||| |||||| gGluArgThrAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIle 289812 : CGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATC : 289868 65 : LeuIleGlnSerAlaLeuHisIleIleTyrGluGluLysAspValLeuLeuArgLeuL : 84 :!!:!!! !! !::!! !|||:!!:!!!:!...!!:!!.|||:!! ! ! !:!!| IleValProPheSerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValL 289869 : ATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTA : 289928 85 : ysIleLeuGlyLeuIlePhePheSerLeuIleSerLeuMetLysTyrTrpAlaLeuTh : 103 ||! !||||||! !:!: |||!!!|||! !!!!!!!.!.||||||!! !!!!!: ysAsnLeuGlyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSe 289929 : AGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAG : 289985 104 : rIleHisLysProGluIleLysTyrCysIleGluGlnValGlnLeuAspTrpLysGln : 122 !!!: ! !!! !||| !|||:!::!!!!.:!!:!! !|||||||||..! rMetLysGlySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMet 289986 : CATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATG : 290042 123 : ValGluMetGluAsnAspArgGluLeuMetLeuLysTyrGlyMetLeuGlyArgAsnL : 142 :!!... |||:!! !!|||! :!!||||||!:!|||! !! !:!!.!!||||||| LeuArgAspGluAspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnL 290043 : TTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATC : 290102 143 : euThrIleTyrSerIleLeuPheMetTyrIleGlySerIleThrTyrMetSerIleTh : 161 ||! !! ! !!! :!!|||:!!|||||||||.!!:!::!!|||! !!!:!!! euIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIl 290103 : TCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCAT : 290159 162 : rGlnTyrAlaMetGlyLeuGlnIleAsnGluHisGlnSerAsnGlnThrIleArgVal : 180 !! !! ! ! ! !...:!:|||! :!! !!!!! !::! !!:!!! ! ! eProLeuPheSerLysLysSerValAsnGlyAsnValThrIleArgProLeuThrTyr 290160 : ACCGTTGTTCTCGAAGAAGAGCGTGAACGGTAACGTGACTATCAGACCTCTAACTTAT : 290216 181 : LeuIleTyrProThrTyrGlyTyrAsnIleGlnLysSerProIleTyrGluIleIleT : 200 ! ! !||| ! !!:! !:!:!!:!!|||||||||||| |||||||||:!!! ProGlyTyrGluGluPhe---PheAspValGlnLysSerProAlaTyrGluIleValP 290217 : CCCGGTTACGAGGAGTTC---TTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCT : 290273 201 : yrGlyIleGlnPheMetCysGlyTyrValValAspThrIleThrSerGlyAlaCysGl : 219 :! !!!!:!!.! !:!:! !! ! :!!..!! !.!||||||! !!.!|||! !.! heCysMetHisCysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSe 290274 : TCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAG : 290330 220 : yLeuAlaAlaLeuPheValThrHisAlaCysGlyGlnIleAspIleIleThrSerArg : 238 !|||.!!.!!:!!|||!.!||||||.!!|||||||||||| ! ||| !|||!!!||| rLeuThrThrIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArg 290331 : TTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGG : 290387 239 : LeuAspAspIleValAlaGlyGlnPheTyrAsnLysAsnLeuSerProAsnIleArgL : 258 |||!!:|||:!:..! ! !! !.!. :!!!!. .!! !!:! !|||| LeuGluAspLeuThrLysArgGlyMetLeuLeuGluLys---GlyValSerAspArgL 290388 : CTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAGAAG---GGAGTGAGTGATCGTT : 290444 259 : euMetAlaIleIleLysHisHisIleArgIleLeu{Ly} >>>> Target Intro : 270 || !!.!:!!:!:!.. !|||:!:..!||||||{||} 655 bp euAlaValValValSerGlyHisValGluIleLeu{Ly}++ 290445 : TGGCGGTTGTTGTGAGCGGTCACGTGGAGATCTTG{AA}gt................. : 290484 271 : n 1 >>>> {s}PheSerAlaValValGluThrValLeuGlnGluValPhePheLeu : 285 {|}|||!!! !:!!:!!|||!:!!.!|||!!.|||:!!|||!!.:!! ++{s}PheThrArgMetIleGluSerAlaLeuHisGluIlePheLeuIle 290485 : ........ag{A}TTCACGAGGATGATCGAAAGCGCGTTGCATGAAATATTCTTGATA : 291180 286 : GluPheAlaGlySerThrPheValIleCysLeuLeuGluTyr : 299 ||| ! !! !|||||| ! :!!:!!||||||:!!|||||| GluValIleValSerThrValLeuLeuCysLeuIleGluTyr 291181 : GAAGTAATAGTATCCACTGTGTTACTATGCTTGATCGAATAT : 291224 vulgar: AfOr56 9 299 . KQ414889.1 289696 291224 + 363 M 53 159 G 0 9 M 124 372 G 1 0 M 64 192 G 1 0 M 17 51 S 0 2 5 0 2 I 0 651 3 0 2 S 1 1 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289697 291224 363 + . gene_id 5 ; sequence AfOr56 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 289697 290481 . + . KQ414889.1 exonerate:protein2genome:local exon 289697 290481 . + . insertions 9 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 290482 290483 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 290482 291136 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 291135 291136 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 291137 291224 . + . KQ414889.1 exonerate:protein2genome:local exon 291137 291224 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289697 291224 363 + . alignment_id 5 ; Query AfOr56 ; Align 289697 10 159 ; Align 289865 63 372 ; Align 290237 188 192 ; Align 290429 253 51 ; Align 291138 271 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 362 Query range: 22 -> 340 Target range: 259772 -> 261844 23 : TyrValThrLysTyrAsnLysTrpValLeuSerCysIleGlyIleTrpProIleValL : 42 ||| ! !:!!!:!|||::!||| !!|||!.! |||||| !|||||| ! !! TyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerS 259773 : TATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCAT : 259830 43 : euLysAsnThr<-><->AsnLysIleLeuProLysIleValIleGlyIleAsnAsnLe : 59 !...!..||| .!.||||||:!! !! |||:!!||| !||| ! !! erSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSe 259831 : CCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAG : 259887 60 : uLeuCysSerPheIleLeuIleGlnSerAlaLeuHisIleIleTyrGluGluLysAsp : 78 ! ! ! !!! !||||||! !!!!!.!||||||!!::!! !|||:!!:!!..! rThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSer 259888 : TACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGT : 259944 79 : ValLeuLeuArgLeuLysIleLeuGlyLeuIlePhePheSerLeuIleSerLeuMetL : 98 :!!! !:!!!:! !|||:!:||||||! !:!! ! !!!!!!!:!!.!!! !!!:! LeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleA 259945 : TTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTA : 260004 99 : ysTyrTrpAlaLeuThrIleHisLysProGluIleLysTyrCysIleGluGlnValGl : 117 !.||| .!!||| !:!:... !!!:||| !|||:!:|||!!.|||:! snTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGl 260005 : ATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGA : 260061 118 : nLeuAspTrpLysGlnValGluMetGluAsnAspArgGluLeuMetLeuLysTyrGly : 136 ! !||||||!:! :!! !! !|||!!.|||!:!.!.:!!||||||!:!|||!.! uAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAla 260062 : GAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCG : 260118 137 : MetLeuGlyArgAsnLeuThrIleTyrSerIleLeuPheMetTyrIleGlySerIleT : 156 ! !!!|||||| !!:!!.!! !! !!!! !|||:!! ! !||| !:!: LysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuC 260119 : AAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGT : 260178 157 : hrTyrMetSerIleThrGlnTyrAlaMetGly<->LeuGlnIleAsnGluHisGlnSe : 174 !!:! ! !:!!||| !! ::!! ! ! :!!|||:!:....!..!. !!! ysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrAr 260179 : GCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAG : 260235 175 : rAsnGlnThrIleArgValLeuIleTyrProThrTyrGlyTyrAsnIleGlnLysSer : 193 !! ! !:!: ! !! ! !! ! ! ! |||:!:.!. ! ||| gIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSer 260236 : GATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGT : 260292 194 : ProIleTyrGluIleIleTyrGlyIleGlnPheMetCysGlyTyrValValAspThrI : 213 |||!!: !!||||||:!! !! !:!:||||||:!:! |||!:!:!!|||:!!:!!! ProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerS 260293 : CCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGA : 260352 214 : leThrSerGlyAlaCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGlnIl : 232 !||| !||| !! !.!!|||||||||:!!.!...!.!!|||||||||||||||:! erThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLe 260353 : GCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTT : 260409 233 : eAspIleIleThrSerArgLeuAspAspIleValAlaGlyGlnPheTyrAsnLysAsn : 251 ::!!:!::!!! !..! !!:!! !!:.!!|||! !! !..! !!!..|||!!. uAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLys 260410 : GAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAA : 260466 252 : LeuSerProAsnIleArgLeuMetAlaIleIleLysHisHisIleArgIleLeuLysP : 271 !:!!||| !! ..!:!! !.!|||:!!:!!||||||:!:||| !|||! !! LysAlaProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeuThr* 260467 : AAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTCACGT : 260526 272 : heSerAlaValValGluThrValLeuGlnGluValPhePheLeuGluPheAlaGlySe : 290 ..! ! !!! ! ||| !!:!!!:! !! !.!!|||:!! !.!||||| **AspLeuPheAspIleThrPheValArg***ArgIlePheIleIleThrValGlySe 260527 : AAGATTTGTTTGATATTACTTTTGTACGATAAAGGATTTTTATAATTACGGTAGGATC : 260583 291 : rThrPheValIleCysLeu{Le} >>>> Target Intron 1 >>>> {u}Glu : 298 ||||...::: |||{:!} 1109 bp {!} rThrIleIle***LysLeu{Il}++ -+{e}Tyr 260584 : Tactataatttgaaaatta{at}gt.........................tg{a}tat : 261716 299 : TyrTyrCysIleAlaAspTrpGluGlnLysAsnIleIleSerLeuThrSerTyrIleL : 318 :::::: ::: !!:|||! :!!:!!:!!||| !!:!|||:!!!!!|||.!!: PhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheM 261717 : ttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCA : 261776 319 : euLeuLeuIleSerLeuThrPheAsnMetPheLeuLeuCysTyrIleGlyAspLeuLe : 337 !!:!!||||||:!!:!! !||||||:!:|||:!!:!!||||||||||||!!::!!|| etMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLe 261777 : TGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACT : 261833 338 : uIleGlnLys : 340 |! :!!:!! uThrGluGln 261834 : AACGGAACAG : 261844 vulgar: AfOr56 22 340 . KQ414889.1 259772 261844 + 362 M 23 69 G 0 6 M 121 363 G 0 3 M 130 390 S 0 2 5 0 2 I 0 1105 3 0 2 S 1 1 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259773 261844 362 + . gene_id 6 ; sequence AfOr56 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259773 260605 . + . KQ414889.1 exonerate:protein2genome:local exon 259773 260605 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260606 260607 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 260606 261714 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261713 261714 . + . intron_id 0 ; splice_site "tg" KQ414889.1 exonerate:protein2genome:local cds 261715 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261715 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259773 261844 362 + . alignment_id 6 ; Query AfOr56 ; Align 259773 23 69 ; Align 259848 46 363 ; Align 260214 167 390 ; Align 261716 298 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 346 Query range: 15 -> 271 Target range: 221357 -> 222131 16 : AsnTyrGluLysAspIleAlaTyrValThrLysTyrAsnLysTrpValLeuSerCysI : 35 :!!|||:!!! !:!!:!: !! !..!:!!! !:!:::|||:!!|||!.! | AspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProI 221358 : GATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGA : 221415 36 : leGlyIleTrpPro<-><->IleValLeuLysAsnThrAsnLysIleLeuProLysIl : 52 |||||:!!|||||| ! !:!!...!....!.!.!:! !||| ! !:! leGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLe 221416 : TCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 53 : eValIleGlyIleAsnAsnLeuLeuCysSerPheIleLeuIleGlnSerAlaLeuHis : 71 ::!!! !! !:!! ! !! !||| !!!!|||:!!|||:!!! !!!::!|||:!! uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 72 : IleIleTyrGluGluLysAspValLeuLeuArgLeuLysIleLeuGlyLeuIlePheP : 91 :!:||| !|||! !:!!||||||! ! !|||:!!|||:!:||||||! !:!: !| ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 92 : heSerLeuIleSerLeuMetLysTyrTrpAlaLeuThrIleHisLysProGluIleLy : 110 ||!!!:!!!!::!!!!!:!:|||||| !|||! !:!!:!!:!! !!!:|||:: heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 111 : sTyrCysIleGluGlnValGlnLeuAspTrpLysGlnValGluMetGluAsnAspArg : 129 : ! |||||||||!:::!!:!!! !|||||||||.!.:!! ...!!.|||!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 130 : GluLeuMetLeuLysTyrGlyMetLeuGlyArgAsnLeuThrIleTyrSerIleLeuP : 149 !!::!!|||:!!:!! !!!.!!!:!!!||||||...|||! !!!: !!!!! !!!!| AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 150 : heMetTyrIleGlySerIleThrTyrMetSerIleThrGlnTyrAlaMetGlyLeuGl : 168 ||||||||! !||| ::: ||| ! !! !! !!:!::!:!!||| :! heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGly---Ly 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGT---AA : 221817 169 : nIleAsnGluHisGlnSerAsnGlnThrIleArgValLeuIleTyrPro<-><->Thr : 185 !||| !! !!!..!. ||| |||... !:!!:!:!:!||| ! ! sIleProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArg 221818 : AATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGA : 221874 186 : TyrGlyTyrAsnIleGlnLysSerProIleTyrGluIleIleTyrGlyIleGlnPheM : 205 !:! ! !:!!! !!:! ! ||||||:!! !!||||||:!:!:!..!:!!|||.!!| PheIleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleM 221875 : TTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTA : 221934 206 : etCysGlyTyrValValAspThrIleThrSerGlyAlaCysGlyLeuAlaAlaLeuPh : 224 ||...||| !:!!:!! !!!:!|||||||||!.!||||||.!!|||!.!|||:!!|| etAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPh 221935 : TGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTT : 221991 225 : eValThrHisAlaCysGlyGlnIleAspIleIleThrSerArgLeuAspAspIleVal : 243 |!.!..!|||||||||||||||!!:.!.:!::!:! !||| !!||| ! !!:!::!! eAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIle 221992 : TGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATC : 222048 244 : AlaGlyGlnPheTyrAsnLysAsnLeuSerProAsnIleArgLeuMetAlaIleIleL : 263 !|||!:! !!! ||| !:! !:!!! |||:!! ! !|||:!:! AsnGlyArgAlaAspMetCysAsn---AsnValAspArgArgIleAlaLysIleValA 222049 : AACGGCCGGGCGGATATGTGTAAC---AACGTGGATAGGAGAATAGCGAAGATTGTGA : 222105 264 : ysHisHisIleArgIleLeuLysPhe : 271 !.!!.|||:!!|||||||||:!!!:! snGlnHisValArgIleLeuGlnTyr 222106 : ATCAACACGTTCGAATATTGCAGTAT : 222131 vulgar: AfOr56 15 271 . KQ414889.1 221357 222131 + 346 M 24 72 G 0 6 M 127 381 G 1 0 M 17 51 G 0 6 M 67 201 G 1 0 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221358 222131 346 + . gene_id 7 ; sequence AfOr56 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221358 222131 . + . KQ414889.1 exonerate:protein2genome:local exon 221358 222131 . + . insertions 12 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 221358 222131 346 + . alignment_id 7 ; Query AfOr56 ; Align 221358 16 72 ; Align 221436 40 381 ; Align 221817 168 51 ; Align 221874 185 201 ; Align 222075 253 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 345 Query range: 13 -> 270 Target range: 208185 -> 208962 14 : AsnProAsnTyrGluLysAspIleAlaTyrValThrLysTyrAsnLysTrpValLeuS : 33 ||| !||||||:!!!!.|||:!:::!!:! !..!::: ||| !|||..!|||! AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 34 : erCysIleGlyIleTrpPro<->IleValLeuLysAsnThrAsnLysIleLeuProLy : 51 .! |||||| !|||||| !:!! !:::::! ! :!!! ! !! ! ! ysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHi 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCA : 208300 52 : sIleValIleGlyIle<->AsnAsnLeuLeuCysSerPheIleLeuIleGlnSerAla : 69 |||:!!:!!..!:!! !:!:!!! !||| !.!!||||||:!!|||! !!!!!.! sIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGly 208301 : TATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGC : 208357 70 : LeuHisIleIleTyrGluGluLysAspValLeuLeuArgLeuLysIleLeuGlyLeuI : 89 :!! ! ||| !! !! :!!||| !!! ! !!:!|||||||||! !.!! !: MetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaL 208358 : ATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTC : 208417 90 : lePhePheSerLeuIleSerLeuMetLysTyrTrpAlaLeuThrIleHisLysProGl : 108 !: !|||! !:!!!!::!!!!!! !|||||| ! !:!!|||:!!!.!:!! !!! euSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAs 208418 : TGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGA : 208474 109 : uIleLysTyrCysIleGluGlnValGlnLeuAspTrpLysGlnValGluMetGluAsn : 127 :|||::! ! |||:!!||| ! |||:!! !||||||!:!.!.|||||| |||.!. pIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGlu 208475 : CATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAG : 208531 128 : AspArgGluLeuMetLeuLysTyrGlyMetLeuGlyArgAsnLeuThrIleTyrSerI : 147 ||||||:!!:!!|||||| ! !!!.!! !!!!.!|||!!.|||! !:!: !!! AspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysG 208532 : GACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCG : 208591 148 : leLeuPheMetTyrIleGlySerIleThrTyrMetSerIleThrGlnTyrAlaMetGl : 166 ! !||||||||| !||| ||| ||| ! ! !! ! !.!! ! lyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAs 208592 : GAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGA : 208648 167 : yLeuGlnIleAsnGluHisGlnSerAsnGlnThrIleArgValLeuIleTyrProThr : 185 ! :!!:!! !|||.!. .!!||| !||| !||| !|||:!!||||||..! p---LysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProVal 208649 : C---AAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTT : 208702 186 : <-><->TyrGlyTyrAsnIleGlnLysSerProIleTyrGluIleIleTyrGlyIleG : 203 !:! ! :!!:!!!:! ! ||||||:!: !!||||||.!!||| !:!!| ProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValG 208703 : CCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTAC : 208762 204 : lnPheMetCysGlyTyrValValAspThrIleThrSerGlyAlaCysGlyLeuAlaAl : 222 ||!!.:!!! |||!:!|||!.! !!!.!|||||| !|||||||||||||||||||| lnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAl 208763 : AATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGC : 208819 223 : aLeuPheValThrHisAlaCysGlyGlnIleAspIleIleThrSerArgLeuAspAsp : 241 ||||.!!!.!! !|||||||||||||||:!:.!.|||:!:! !||| !!:!!!!: ! aLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLys 208820 : GCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAG : 208876 242 : IleValAlaGlyGlnPheTyrAsnLysAsnLeuSerProAsnIleArgLeuMetAlaI : 261 :!:|||! !|||!:! ! :!!:!!.!. !!:! !:!! |||||| !| LeuValAspGlyArg---GluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnI 208877 : TTGGTCGATGGACGG---GAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATA : 208933 262 : leIleLysHisHisIleArgIleLeuLys : 270 ||:!::!!!!.|||:!!|||:!::!!||| leValGluGlnHisValArgValIleLys 208934 : TCGTGGAGCAGCATGTTCGAGTGATCAAG : 208962 vulgar: AfOr56 13 270 . KQ414889.1 208185 208962 + 345 M 26 78 G 0 3 M 17 51 G 0 3 M 110 330 G 1 0 M 18 54 G 0 6 M 61 183 G 1 0 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 208962 345 + . gene_id 8 ; sequence AfOr56 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208186 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208962 . + . insertions 12 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 208186 208962 345 + . alignment_id 8 ; Query AfOr56 ; Align 208186 14 78 ; Align 208267 40 51 ; Align 208321 57 330 ; Align 208651 168 54 ; Align 208711 186 183 ; Align 208894 248 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 310 Query range: 15 -> 271 Target range: 212851 -> 213625 16 : AsnTyrGluLysAspIleAlaTyrValThrLysTyrAsnLysTrpValLeuSerCysI : 35 !.!||||||||| ::: !!::|||:::|||:!!|||!.! ! ThrTyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProT 212852 : ACCTACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAA : 212909 36 : leGlyIleTrpPro<-><->IleValLeuLysAsnThrAsnLysIleLeuProLysIl : 52 |||:!:|||||| ! !:!!..! ! !.!.|||! !:!! !!::!:! hrGlyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIleAlaArgLe 212910 : CGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATT : 212966 53 : eValIleGlyIleAsnAsnLeuLeuCysSerPheIleLeuIleGlnSerAlaLeuHis : 71 :|||! ! !:!! ! !! !||| !.!!!:!:!!:!!|||! !!!!::!|||:!! uValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyr 212967 : GGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTAC : 213023 72 : IleIleTyrGluGluLysAspValLeuLeuArgLeuLysIleLeuGlyLeuIlePheP : 91 :!:.!! !!!:! !:::::::::... ...:!!:!!:!:!!!|||:!!.!! | ValPheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheAlaP 213024 : GTGTTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTGCAT : 213083 92 : heSerLeuIleSerLeuMetLysTyrTrpAlaLeuThrIleHisLysProGluIleLy : 110 ||!!!:!! !:!!||| !|||||| :!!|||! !:!!||| !!!:|||:: heCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleAr 213084 : TTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCG : 213140 111 : sTyrCysIleGluGlnValGlnLeuAspTrpLysGlnValGluMetGluAsnAspArg : 129 : |||:!!|||!!.:!!:!!! !|||||||||.!.:!! ! |||.!.|||!:! gThrCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLys 213141 : TACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAA : 213197 130 : GluLeuMetLeuLysTyrGlyMetLeuGlyArgAsnLeuThrIleTyrSerIleLeuP : 149 |||:!!||| ! ! !!!.!! !!!|||!:!!..:!!..!! ! !!!! !!!!| GluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPheP 213198 : GAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCT : 213257 150 : heMetTyrIleGlySerIleThrTyrMetSerIleThrGlnTyrAlaMetGlyLeuGl : 168 ||||||||! !|||! !! !|||.!. !:!!..!! ! !::! !! ! !.. heMetTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLysMe 213258 : TCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAAT : 213314 169 : nIleAsnGluHisGlnSerAsnGlnThrIleArgValLeuIleTyrProThrTyrGly : 187 !:!! ||| .!. !||| !|||.!!||| !:!!:!: !|||..!! !! tValAlaGlu---AspLeuAsnValThrPheArgGlnMetValValProValSerArg 213315 : GGTAGCGGAG---GATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGA : 213368 188 : Tyr<-><->AsnIleGlnLysSerProIleTyrGluIleIleTyrGlyIleGlnPheM : 205 !:! :!!:!!!:! ! ||||||:!: !!||||||.!!!:! !||||||.!!! PheIleValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleI 213369 : TTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTA : 213428 206 : etCysGlyTyrValValAspThrIleThrSerGlyAlaCysGlyLeuAlaAlaLeuPh : 224 !:..!||| :!!:!! !!.!!|||.!! !! !||||||.!!|||||||||:!!|| leAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPh 213429 : TAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTT : 213485 225 : eValThrHisAlaCysGlyGlnIleAspIleIleThrSerArgLeuAspAspIleVal : 243 |!.!..!|||||||||||||||!!:! !|||:!:! !||| !!|||!!: !!:!::!! eAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIle 213486 : TGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATA : 213542 244 : AlaGlyGlnPheTyrAsnLysAsnLeuSerProAsnIleArgLeuMetAlaIleIleL : 263 ! !|||::! ! :!!! !!:! !!:! !:!! !|||:!! !!.!|||:!:! AspGlyArg---GluAspMetSerLysAsnValAspAspArgIleAlaValIleValA 213543 : GACGGTAGA---GAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGA : 213599 264 : ysHisHisIleArgIleLeuLysPhe : 271 !.!!.|||:!:||||||||||||!:: snGlnHisValArgIleLeuLysTrp 213600 : ACCAGCATGTGCGGATACTGAAGTGG : 213625 vulgar: AfOr56 15 271 . KQ414889.1 212851 213625 + 310 M 24 72 G 0 6 M 132 396 G 1 0 M 16 48 G 0 6 M 58 174 G 1 0 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212852 213625 310 + . gene_id 9 ; sequence AfOr56 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212852 213625 . + . KQ414889.1 exonerate:protein2genome:local exon 212852 213625 . + . insertions 12 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 212852 213625 310 + . alignment_id 9 ; Query AfOr56 ; Align 212852 16 72 ; Align 212930 40 396 ; Align 213326 173 48 ; Align 213380 189 174 ; Align 213554 248 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 310 Query range: 15 -> 356 Target range: 256631 -> 258423 16 : AsnTyrGluLysAspIleAlaTyrValThrLysTyrAsnLysTrpValLeuSerCysI : 35 |||!:!:!!!.. !!! !! !||| ! !:!!! |||::!||| !!|||!.! !| AsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 256632 : AATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTA : 256689 36 : leGlyIleTrpProIleValLeuLysAsnThrAsn<->LysIleLeuProLysIleVa : 53 ||||| !|||||| ! !! !...!.!|||!.! :!! ! ! !..!||||| leGlyAlaTrpProProSerSerSerThrThrThrLeuGluArgAsnValSerIleVa 256690 : TAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGT : 256746 54 : lIleGlyIleAsnAsnLeu<->LeuCysSerPheIleLeuIleGlnSerAlaLeuHis : 71 |:!:..!||| ! !! ! ! ! ! !|||! !||||||! !!! !|||||| lLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIleProCysLeuLeuHis 256747 : TTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCAT : 256803 72 : IleIleTyrGluGluLysAspValLeuLeuArgLeuLysIleLeuGlyLeuIlePheP : 91 :!!.!! !!!:!!: ! ..! !!! :::::::::||| ...|||! !!!: ! ValPheLeuAspAspAspSerPheTyrMetLysValLysAsnPheGlyProMetSerH 256804 : GTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCC : 256863 92 : heSerLeuIleSerLeuMetLysTyrTrpAlaLeuThrIleHisLysProGluIleLy : 110 !!!!:!!||||||! ! !!.||| ! !||| !:!!!!. ! !!!:|||:: isTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleAr 256864 : ATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACG : 256920 111 : sTyrCysIleGluGlnValGlnLeuAspTrpLysGlnValGluMetGluAsnAspArg : 129 :||||||:!!|||!!.:!!:!! !||||||!:!..!|||..!! !|||!!.|||!:! gTyrCysValGluHisIleGluThrAspTrpArgMetValArgArgGluLysAspGln 256921 : CTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAA : 256977 130 : GluLeuMetLeuLysTyrGlyMetLeuGlyArgAsnLeuThrIleTyrSerIleLeuP : 149 :!!:!!|||:!!||| !!!.!! !!!|||||| !!:!!.!!! !!:!!!! ! !. GlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaI 256978 : CAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTA : 257037 150 : heMetTyrIleGlySerIleThrTyrMetSerIleThrGlnTyrAlaMetGlyLeuGl : 168 !!||| ! ! !||| ... :::... ! :!! ! !! !! !:!! leMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAsnThrGluIle-- 257038 : TCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATA-- : 257094 169 : nIleAsnGluHisGlnSerAsnGlnThrIleArgValLeuIleTyrProThrTyrGly : 187 |||:!!! ! .!...!!.. !! !:!:||||||||| ! ! !!..!||| ! -IleHisValGlyAsnGluThrThrIleValArgValLeuProValThrValTyrLys 257095 : -ATTCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAG : 257148 188 : <-><->TyrAsnIleGlnLysSerProIleTyrGluIleIleTyrGlyIleGlnPheM : 205 ! |||:!!.!.:!!||||||! !!||||||:!: ! !!!:||| ! LysLeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheMetGlnThrT 257149 : AAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTT : 257208 206 : etCysGlyTyrValValAspThrIleThrSerGlyAlaCysGlyLeuAlaAlaLeuPh : 224 !! ..! !:!!!.! !|||! !||| !.!! !! !.!!|||||||||:!!|| rpSerSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAlaAlaValPh 257209 : GGTCGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTT : 257265 225 : eValThrHisAlaCysGlyGlnIleAspIleIleThrSerArgLeuAspAspIleVal : 243 |!.!|||||||||! !||||||:!: !:!::!!! !||| !!:!! !!:.!!||| eAlaThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGluPheVal 257266 : TGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTG : 257322 244 : AlaGlyGlnPheTyrAsnLysAsnLeuSerProAsnIleArgLeuMetAlaIleIleL : 263 !! !..! !!...:::... ||| !! !:!:!! !.!|||:!:: AsnGluSerArgAsnArgGluLysThrPheProPheLysGlnIleGlyValIleValG 257323 : AATGAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGG : 257382 264 : ysHisHisIleArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}Ph : 271 !!||||||:!!|||:!:|||{!:} 760 bp {!}! luHisHisLeuArgValLeu{Ar}++ +-{g}Cy 257383 : AGCATCATTTAAGAGTGCTG{AG}gt.........................ac{G}TG : 258166 272 : eSerAlaValValGluThrValLeuGlnGluValPhePheLeuGluPheAlaGlySer : 290 ! ! ! ! !.!. !:!!! !|||.!.! !! !! ! !:! !..!! ! sValMetTyrArgAsnLeuLeuGlnGlnAsnGly***AsnArgThrTyrAsnAsnPhe 258167 : CGTTATGTACCGAAACCTGTTGCAACAAAATGGTTAAAATCGTACCTACAATAATTTT : 258223 291 : ThrPheValIleCysLeuLeuGluTyrTyrCysIleAlaAspTrpGluGlnLysAsnI : 310 !!.!. !! ::: :::||| ... :::|||... !::::::| ProIleHisSerTyrSerValIlePheTyrTyrPheGlnGluTrpSerThrGlnAspI 258224 : CCTATACACAGctattctgttattttttattattttcaggaATGGTCTACGCaagata : 258283 311 : leIleSerLeuThrSerTyrIleLeuLeuLeuIleSerLeuThrPheAsnMetPheLe : 329 || :::|||:::||||||.!!:!!:!!||||||||||||:::||||||:::|||:: leGlnAsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheVa 258284 : ttcaaaatttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgt : 258340 330 : uLeuCysTyrIleGlyAspLeuLeuIleGlnLysSerGlyAsnIleGlyValValVal : 348 ::::||||||||||||!!::!!|||! !:!!:!! ! ...||| ::::::||| lIleCysTyrIleGlyGluIleLeuThrGluGlnValProGluIle***LeuIleVal 258341 : aatatgttACATAGGTGAAATATTAACAGAACAGGTACCagagatttaattaattgtc : 258397 349 : PheMetIleAspTrpPheHisLeu : 356 :!! !! !:::::||| ThrTyrValHisLysTrpAsnLeu 258398 : aCATATGTACACAAATGGaacttg : 258423 vulgar: AfOr56 15 356 . KQ414889.1 256631 258423 + 310 M 31 93 G 0 3 M 13 39 G 0 3 M 108 324 G 1 0 M 19 57 G 0 6 M 82 246 S 0 2 5 0 2 I 0 756 3 0 2 S 1 1 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256632 258423 310 + . gene_id 10 ; sequence AfOr56 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256632 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256632 257404 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 258164 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258163 258164 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 258165 258423 . + . KQ414889.1 exonerate:protein2genome:local exon 258165 258423 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256632 258423 310 + . alignment_id 10 ; Query AfOr56 ; Align 256632 16 93 ; Align 256728 47 39 ; Align 256770 60 324 ; Align 257094 169 57 ; Align 257157 188 246 ; Align 258166 271 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 283 Query range: 12 -> 242 Target range: 194141 -> 194831 13 : ArgAsnProAsnTyrGluLysAspIleAlaTyrValThrLysTyrAsnLysTrpValL : 32 |||||| !||||||:!! !|||! !! !|||!.!..!::! ||| !:!!| ArgAsnValAsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuL 194142 : CGCAACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTC : 194199 33 : euSerCysIleGlyIleTrpProIleValLeuLysAsnThrAsnLysIleLeuProLy : 51 ||!!! |||||||||||||||! ! ! !... ! !:!!!:!:!!! !! ! euThrProIleGlyIleTrpProArgGluAspSerLeuArgAspArgValArgLeuPh 194200 : TAACACCGATCGGTATCTGGCCAAGGGAGGATTCTCTTCGCGACAGAGTCCGACTGTT : 194256 52 : sIleValIleGlyIleAsnAsnLeuLeuCysSerPheIleLeuIleGlnSerAlaLeu : 70 ! !! !|||:!: ! ! !||| !!!|||:!!|||:!!! !!.!:!! eAlaGlnThrGlyValValPheAlaLeuMetCysPheLeuLeuValProHisValIle 194257 : CGCTCAAACTGGCGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATC : 194313 71 : HisIleIleTyrGluGluLysAspValLeuLeuArgLeuLysIleLeuGlyLeuIleP : 90 :!!! ! !!:!!!: :!!|||:!! ! ! !:!!|||:!!:!!!.! ! ! TyrThrTyrPheAspCysGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnV 194314 : TACACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAG : 194373 91 : hePheSerLeuIleSerLeuMetLysTyrTrpAlaLeuThrIleHisLysProGluIl : 109 ! |||||||||:!::!!:!!!!:|||!:!|||.!!:!!! !:!::!!!:! !||||| alPheSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnArgLysGluIl 194374 : TGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGAT : 194430 110 : eLysTyrCysIleGluGlnValGlnLeuAspTrpLysGlnValGluMetGluAsnAsp : 128 |!:!!:!|||:!: !:!!:!!:!! !.!.!::!:!.!.|||||| |||.!.||| eArgPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCysGluGluAsp 194431 : CAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGAT : 194487 129 : ArgGluLeuMetLeuLysTyrGlyMetLeuGlyArgAsnLeuThrIleTyrSerIleL : 148 |||:!!:!!||| !!!.! !!.!! :!!|||||| !!!!|||! ! ! !:!: ArgGlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuG 194488 : CGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGG : 194547 149 : euPheMetTyrIleGlySerIleThrTyrMetSerIleThrGlnTyrAlaMetGlyLe : 167 !.!! ||| !|||:!!:!: !!||| ! !||| !! ! !! ! lyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluAr 194548 : GACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAG : 194604 168 : uGlnIleAsnGluHisGlnSerAsnGlnThrIleArgValLeuIleTyrProThrTyr : 186 ! :!!!!.||| !!.!.|||!.!|||! ! !! ! !! !:!: ! ! ! ! gIleValLysGluAspAsnSerThrGlnIleProLeuProTyrLeuSerAsnTyrVal 194605 : GATTGTCAAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTT : 194661 187 : GlyTyrAsnIleGlnLysSerProIleTyrGluIleIleTyrGlyIleGlnPheMetC : 206 !!:! |||:!! ! ||||||||||||||||||! !!:!! ! |||.!.:!! PhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerGlnIleLeuI 194662 : TTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGA : 194721 207 : ysGlyTyrValValAspThrIleThrSerGlyAlaCysGlyLeuAlaAlaLeuPheVa : 225 !.!! !:!!:!! :!!! !.!!!!||| !! !.!!|||!.!||| !.!!:! leSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIl 194722 : TTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTAT : 194778 226 : lThrHisAlaCysGlyGlnIleAspIleIleThrSerArgLeuAspAspIle : 242 !! !|||..!|||||| !.!!!!::!:! !!:!!!!|||:!!!!: !||| eMetHisCysCysGlyLeuPheGluValThrSerArgArgMetGluThrIle 194779 : TATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGATGGAGACTATT : 194831 vulgar: AfOr56 12 242 . KQ414889.1 194141 194831 + 283 M 230 690 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194142 194831 283 + . gene_id 11 ; sequence AfOr56 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194142 194831 . + . KQ414889.1 exonerate:protein2genome:local exon 194142 194831 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194142 194831 283 + . alignment_id 11 ; Query AfOr56 ; Align 194142 13 690 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 283 Query range: 172 -> 393 Target range: 300183 -> 302036 173 : GlnSerAsnGlnThrIleArgValLeuIleTyrProThrTyrGlyTyrAsnIle<->< : 191 ::!..!||| ! ||| !!:! !||| !|||||| !|||! !!:: !||| ArgGluAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspT 300184 : AGGGAGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATA : 300241 192 : ->GlnLysSerProIleTyrGluIleIleTyrGlyIleGlnPheMetCysGlyTyrVa : 209 |||! ||||||! !|||||||||:::::: ...... .!....!.! :! hrGlnThrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIl 300242 : CACAAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGAT : 300298 210 : lValAspThrIleThrSerGlyAlaCysGlyLeuAlaAlaLeuPheValThrHisAla : 228 !:!! !!!.!:!:|||!!!!.!|||! !.!!|||||||||:!!|||||||||||| ! eMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIle 300299 : CATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATC : 300355 229 : CysGlyGlnIleAspIleIleThrSerArgLeuAspAspIleValAlaGlyGlnPheT : 248 ||||||||||||.!.||| ! !:!!||||||!!:|||:!:|||! ! ::! CysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGlu---ArgThrG 300356 : TGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAG---AGGACGG : 300412 249 : yrAsnLysAsnLeuSerProAsnIleArgLeuMetAlaIleIleLysHisHisIleAr : 267 .!.|||:!! !.!!|||:!! ! !|||:!:!.!|||:!!::! !!|||:!:!: lyGluLysAspAspGlyProAsp---ProLeuValValIleValArgAspHisValLy 300413 : GAGAGAAGGACGACGGTCCTGAT---CCTTTGGTCGTTATCGTTCGAGATCACGTGAA : 300466 268 : gIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheSerAlaValVal : 275 !:!!|||{!:} 140 bp {!}|||:!! ! !||| sValLeu{Ar}++ ++{g}PheAlaLysAsnVal 300467 : GGTTTTA{AG}gt.........................ag{A}TTTGCAAAGAACGTT : 300630 276 : GluThrValLeuGlnGluValPhePheLeuGluPheAlaGlySerThrPheValIleC : 295 ||| !..!|||!::!!: !!! !!!.:!!|||.!! !! !||||||.!.:!!:!:| GluGluThrLeuArgAspPheCysLeuValGluIlePheGluSerThrLeuIleLeuC 300631 : GAGGAAACTTTGCGTGACTTCTGCTTAGTGGAAATCTTCGAGTCCACGCTGATTTTGT : 300690 296 : ysLeuLeuGluTyrTyrCysIle >>>> Target Intron 2 >>>> AlaAsp : 304 ||||||||||||||||||||:!: 1050 bp ! ysLeuLeuGluTyrTyrCysLeu++ +-IleLeu 300691 : GTTTGCTCGAATACTACTGTTTGgt.........................atATTCTG : 301767 305 : TrpGluGlnLysAsnIleIleSerLeuThrSerTyrIleLeuLeuLeuIleSerLeuT : 324 .!.!:!::!:!! !.!! !! ! !!!!|||:!!! !! ! ... ... LeuHisArgArgAspSerPheArgThrGlyThrTyrLeuGln***LysPheProPheL 301768 : CTACATCGGCGAGATTCTTTCCGAACAGGTACTTACTTACAGTAGAagtttccatttc : 301827 325 : hrPheAsnMetPheLeuLeuCysTyrIleGlyAspLeuLeuIleGlnLysSerGlyAs : 343 ||||||:!:|||! !! !! !! ! !.!! !:!! ! !.!. !!!!!.!!.! euPheAsnValPheProArgTyrLeuSerSerPheIleGlyArgAsp***CysSerGl 301828 : ttttcaatGTATTTCCACGGTATTTAAGCAGCTTTATTGGTCGTGATTAGTGTAGCCA : 301884 344 : nIleGlyValValValPheMetIleAspTrpPheHisLeuProThrLysThrIleGln : 362 .|||||| !!.! !!:! !|||||||||!:!:!!||||||.!!|||! ! ! ! nIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyr 301885 : AATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATAC : 301941 363 : AsnLeuIleLeuIleMetAlaMetSerAsnAsnProAlaLysLeuThrValGlyArgI : 382 :!!|||||||||:!!! !.!!!:|||.!. !!||| !!|||||||||!.!|||!:!| AspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGlyLysI 301942 : GATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAA : 302001 383 : leValAspLeuSerLeuSerThrPheGlyAsnVal : 393 ||:!!||||||||||||!:!||||||.!!::!||| leIleAspLeuSerLeuAsnThrPheSerSerVal 302002 : TAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: AfOr56 172 393 . KQ414889.1 300183 302036 + 283 M 18 54 G 0 6 M 54 162 G 1 0 M 10 30 G 1 0 M 13 39 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 32 96 5 0 2 I 0 1046 3 0 2 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300184 302036 283 + . gene_id 12 ; sequence AfOr56 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300184 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300184 300476 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 300616 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300615 300616 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300617 300713 . + . KQ414889.1 exonerate:protein2genome:local exon 300617 300713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300714 300715 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300714 301763 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301762 301763 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 301764 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301764 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300184 302036 283 + . alignment_id 12 ; Query AfOr56 ; Align 300184 173 54 ; Align 300244 191 162 ; Align 300406 246 30 ; Align 300436 257 39 ; Align 300618 271 96 ; Align 301764 303 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 278 Query range: 15 -> 270 Target range: 274362 -> 275136 16 : AsnTyrGluLysAspIleAlaTyrValThrLysTyrAsnLysTrpValLeuSerCysI : 35 |||!:!!!:!.. !! !! !||| ! !:!!! |||::!||| !!|||!.! !| AsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 274363 : AATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTA : 274420 36 : leGlyIleTrpProIleValLeuLysAsnThr<-><->AsnLysIleLeuProLysIl : 52 ||||| ||||||:!!!.!! ! !.!||| .!.::!|||||| !! ! :: leGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLeuSerHisLe 274421 : TAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCt : 274477 53 : eValIleGlyIleAsnAsnLeuLeuCysSerPheIleLeuIleGlnSerAlaLeuHis : 71 ::::||| ::: !!! !!!! !! !! !:!!|||! !||| !!!!||| uLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIlePheHis 274478 : tttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCAC : 274534 72 : IleIleTyrGluGluLysAspValLeuLeuArgLeuLysIleLeuGlyLeuIlePheP : 91 |||||| ! !!!::!!..!:!!! !|||!:!||||||:!:||||||! !:!! ! IleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyH 274535 : ATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTC : 274594 92 : heSerLeuIleSerLeuMetLysTyrTrpAlaLeuThrIleHisLysProGluIleLy : 110 !!!!!!!|||.!! !!!:!!.||| .!!||| !:!!!.!!.. !||||||:: isTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleAr 274595 : ACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACG : 274651 111 : sTyrCysIleGluGlnValGlnLeuAspTrpLysGlnValGluMetGluAsnAspArg : 129 : !|||:!:|||!!.:!!||| !||||||!:! ||| ! !.!.|||!:! gGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAspGln 274652 : CGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAA : 274708 130 : GluLeuMetLeuLysTyrGlyMetLeuGlyArgAsnLeuThrIleTyrSerIleLeuP : 149 :!!:!!||||||||| !!!.!! !:!!|||||| !!:!!.!!|||!:!!!! !| GlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaP 274709 : CAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGT : 274768 150 : heMetTyrIleGlySerIleThrTyrMetSerIleThrGlnTyrAlaMetGlyLeuGl : 168 ||||| ! !||| !:!! !||| !|||||| !!:!.!!||| ! ! heMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMet---GlnTh 274769 : TCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATG---CAGAC : 274822 169 : nIleAsnGluHisGlnSerAsnGlnThrIleArgValLeuIleTyrProThrTyrGly : 187 :!!.!.! ! .!...!!.!::!|||:!:!.!:!!||| ! ! !.!!||| ! rValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLys 274823 : CGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAG : 274879 188 : <-><->TyrAsnIleGlnLysSerProIleTyrGluIleIleTyrGlyIleGlnPheM : 205 ! :!:.!.! !||||||! !!||||||:!! !!.! ||||||: LysIleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnPheV 274880 : AAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCG : 274939 206 : etCysGlyTyrValValAspThrIleThrSerGlyAlaCysGlyLeuAlaAlaLeuPh : 224 !!! |||!:!:!!|||:!!:!!! !.!! !||||||! !.!!|||||||||:!!|| alSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPh 274940 : TGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTT : 274996 225 : eValThrHisAlaCysGlyGlnIleAspIleIleThrSerArgLeuAspAspIleVal : 243 |!.!.!!||||||! !||||||:!:..!:!::!:! !! ! !!:!! !!!:.!!||| eAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheVal 274997 : CGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTG : 275053 244 : AlaGlyGlnPheTyrAsnLysAsnLeuSerProAsnIleArgLeuMetAlaIleIleL : 263 ! !... ! ......... !..!:!! !.!:!!:!!: AsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValValValG 275054 : AATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCG : 275113 264 : ysHisHisIleArgIleLeuLys : 270 !!||||||:!:|||:!!|||!:! luHisHisLeuArgValLeuArg 275114 : AACATCATCTGAGGGTACTCAGG : 275136 vulgar: AfOr56 15 270 . KQ414889.1 274362 275136 + 278 M 30 90 G 0 6 M 120 360 G 1 0 M 21 63 G 0 6 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274363 275136 278 + . gene_id 13 ; sequence AfOr56 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274363 275136 . + . KQ414889.1 exonerate:protein2genome:local exon 274363 275136 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 274363 275136 278 + . alignment_id 13 ; Query AfOr56 ; Align 274363 16 90 ; Align 274459 46 360 ; Align 274819 167 63 ; Align 274888 188 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 276 Query range: 8 -> 269 Target range: 278534 -> 279338 9 : IleAsnGluProArgAsnProAsnTyrGluLysAspIleAlaTyrValThrLysTyrA : 28 :!!!.!..! !!! !:!! !!!..!::.!.! !||| !||| !..!:!! | ValThrSerSerThrAspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetA 278535 : GTCACTTCGTCAACCGATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGA : 278592 29 : snLysTrpValLeuSerCysIleGlyIleTrpProIleValLeuLysAsnThr<-><- : 46 ||:::||| !!|||!.! ||||||:!!||||||:!! !||| ||| snArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLe 278593 : ACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTT : 278649 47 : >AsnLysIleLeuProLysIleValIleGlyIleAsnAsnLeuLeuCysSerPheIle : 64 .!.|||||| ! !! !:!!:!! !|||!:! !!!!||| .!!|||:!! uGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeu 278650 : GGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTC : 278706 65 : LeuIleGlnSerAlaLeuHisIleIleTyrGluGluLys<->AspValLeuLeuArgL : 83 |||:!!! !!!!|||||| !! !:!: !!!::!!! |||:!! ! !!:!: LeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysI 278707 : TTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGA : 278766 84 : euLysIleLeuGlyLeuIlePhePheSerLeuIleSerLeuMetLysTyrTrpAlaLe : 102 !!|||!!::!!|||! !:!! !|||!!! !!!::!! !!!:||||||!:: !|| leLysMetIleGlyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLe 278767 : TCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCT : 278823 103 : uThrIleHisLysProGluIleLysTyrCysIleGluGlnValGlnLeuAspTrpLys : 121 |! ! !.! !:!!||| ! |||:!:.!..!.:!!!:: !||||||... uMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSer 278824 : AATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCT : 278880 122 : <-><-><->GlnValGluMetGluAsnAspArgGluLeuMetLeuLysTyrGlyMetL : 138 ..! !......|||...:::||||||:::||| ! ! !!.!! : LeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgI 278881 : CTTACACTTTCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAA : 278940 139 : euGlyArgAsnLeuThrIleTyrSerIleLeuPheMetTyrIleGlySerIleThrTy : 157 !!||||||::!|||.!!|||!:!||| ! !||||||||| !|||.!!:!! !|| leGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTy 278941 : TTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTA : 278997 158 : rMetSerIleThrGln<->TyrAlaMetGlyLeuGlnIleAsnGluHisGlnSerAsn : 175 |! :!!:!:! !! ! !:!|||:!: !! !:!!|||! !!!::!!:!!!!! rThrAlaValMetProLeuPheAlaValArgThrGluIleIleAspAsnGluThrVal 278998 : CACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTG : 279054 176 : GlnThrIleArgValLeuIleTyrProThrTyrGlyTyrAsnIleGlnLysSerProI : 195 ::!:!! ! ! !!! !||||||! ! ! ! !:!! !::! |||||| ArgSerGlnAlaPheProIleTyrArgGlyLeu---LeuAspProArgThrSerProS 279055 : AGATCTCAAGCGTTCCCGATCTATCGCGGCCTC---CTCGATCCGCGTACCAGCCCGT : 279111 196 : leTyrGluIleIleTyrGlyIleGlnPheMetCysGlyTyrValValAspThrIleTh : 214 !:!||||||:!: ! !!!:|||! !:!!..!!.!!:!|||:!! !!:!!:!!|| erPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValTh 279112 : CGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCAC : 279168 215 : rSerGlyAlaCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGlnIleAsp : 233 | !|||||||||.!!||| !|||:!!||||||! !|||!.!|||||||||.!! rValGlyAlaCysSerLeuIleAlaValPheValMetHisValCysGlyGlnPheArg 279169 : TGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGG : 279225 234 : IleIleThrSerArgLeuAspAspIleValAlaGlyGlnPheTyrAsnLysAsnLeuS : 253 |||:!!..!!!!!:!|||||| ! :!!:!!! !||| ! !..|||!:!|||| IleLeuValThrLysLeuAspLysLeuIleAspGlyValLysGlyArgLysSerLeuS 279226 : ATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGA : 279285 254 : erProAsn<->IleArgLeuMetAlaIleIleLysHisHisIleArgIleLeu : 269 || !!:!! !|||||| ! !||||||:!!||||||:!:!:!|||||| erThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu 279286 : GCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG : 279338 vulgar: AfOr56 8 269 . KQ414889.1 278534 279338 + 276 M 37 111 G 0 6 M 32 96 G 0 3 M 44 132 G 0 9 M 41 123 G 0 3 M 24 72 G 1 0 M 68 204 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278535 279338 276 + . gene_id 14 ; sequence AfOr56 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278535 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278535 279338 . + . insertions 24 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278535 279338 276 + . alignment_id 14 ; Query AfOr56 ; Align 278535 9 111 ; Align 278652 46 96 ; Align 278751 78 132 ; Align 278892 122 123 ; Align 279018 163 72 ; Align 279090 188 204 ; Align 279297 256 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 276 Query range: 8 -> 269 Target range: 284481 -> 285285 9 : IleAsnGluProArgAsnProAsnTyrGluLysAspIleAlaTyrValThrLysTyrA : 28 :!!!.!... !!! !:!! !!!..!::!!:! !||| !||| !..!:!! | ValThrSerSerThrAspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetA 284482 : GTCACTTCTTCAACCGATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGA : 284539 29 : snLysTrpValLeuSerCysIleGlyIleTrpProIleValLeuLysAsnThr<-><- : 46 ||:::||| !!|||!.! ||||||:!!||||||:!! !||| ||| snArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLe 284540 : ACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTT : 284596 47 : >AsnLysIleLeuProLysIleValIleGlyIleAsnAsnLeuLeuCysSerPheIle : 64 .!.|||||| ! !! !:!!:!! !|||!:! !!!!||| .!!|||:!! uGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeu 284597 : GGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTC : 284653 65 : LeuIleGlnSerAlaLeuHisIleIleTyrGluGluLys<->AspValLeuLeuArgL : 83 |||:!!! !!!!|||||| !! !:!: !!!::!!! |||:!! ! !!:!: LeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysI 284654 : TTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGA : 284713 84 : euLysIleLeuGlyLeuIlePhePheSerLeuIleSerLeuMetLysTyrTrpAlaLe : 102 !!|||!!::!!|||! !:!: !|||!!!:!!!!::!! !!!:||||||!:: !|| leLysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLe 284714 : TCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCT : 284770 103 : uThrIleHisLysProGluIleLysTyrCysIleGluGlnValGlnLeuAspTrpLys : 121 |! ! !.! !:!!||| ! |||:!::!!.!.:!!!:: !||||||... uIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIleArgAlaAspTrpSer 284771 : AATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGACTGGTCT : 284827 122 : GlnVal<-><-><->GluMetGluAsnAspArgGluLeuMetLeuLysTyrGlyMetL : 138 ! ..! ......|||...:::||||||:::||| ! ! !!.!! : LeuThrLeuSerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgI 284828 : CTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAA : 284887 139 : euGlyArgAsnLeuThrIleTyrSerIleLeuPheMetTyrIleGlySerIleThrTy : 157 !!||||||::!|||.!!|||!:!!!! ! !||||||||| !|||.!!.!! !|| leGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTy 284888 : TTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTA : 284944 158 : rMetSerIleThrGlnTyrAlaMetGlyLeuGlnIleAsnGluHisGlnSerAsnGln : 176 |! !!!:!: !!:!! !! ! ! !!..||| ! ..!|||:!! rThrThrVal------MetProLeuCysThrValArgThrGluIleIleAspAsnGlu 284945 : CACCACGGTG------ATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAG : 284995 177 : ThrIleArgValLeuIleTyrProThrTyrGly<-><->TyrAsnIleGlnLysSerP : 194 |||:!:||| !! ! !:!|||! !||| !! !:!! !::! |||| ThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerP 284996 : ACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCC : 285055 195 : roIleTyrGluIleIleTyrGlyIleGlnPheMetCysGlyTyrValValAspThrIl : 213 || !:!||||||:!: ! !!!:|||! !:!!..!!.!!:!|||:!! !!:!!:! roSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerVa 285056 : CGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGT : 285112 214 : eThrSerGlyAlaCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGlnIle : 232 !||| !|||||||||.!!|||||||||:!!||||||! !|||!.!|||||||||.!! lThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPhe 285113 : CACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTT : 285169 233 : AspIleIleThrSerArgLeuAspAspIleValAlaGlyGlnPheTyrAsnLysAsnL : 252 |||:!!..!!!!!:!|||||| ! :!!|||! !||| ! !..|||...| ArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLysGlyArgLysGlyL 285170 : AGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGT : 285229 253 : euSerProAsn<->IleArgLeuMetAlaIleIleLysHisHisIleArgIleLeu : 269 ||||| !!:!! !|||||| ! !||||||:!!||||||:!:!:!|||||| euSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu 285230 : TGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG : 285285 vulgar: AfOr56 8 269 . KQ414889.1 284481 285285 + 276 M 37 111 G 0 6 M 32 96 G 0 3 M 46 138 G 0 9 M 37 111 G 2 0 M 25 75 G 0 6 M 68 204 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284482 285285 276 + . gene_id 15 ; sequence AfOr56 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284482 285285 . + . KQ414889.1 exonerate:protein2genome:local exon 284482 285285 . + . insertions 27 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 284482 285285 276 + . alignment_id 15 ; Query AfOr56 ; Align 284482 9 111 ; Align 284599 46 96 ; Align 284698 78 138 ; Align 284845 124 111 ; Align 284956 163 75 ; Align 285037 188 204 ; Align 285244 256 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 270 Query range: 22 -> 270 Target range: 266637 -> 267390 23 : TyrValThrLysTyrAsnLysTrpValLeuSerCysIleGlyIleTrpPro<-><->I : 40 ||| ! !:!!! |||::!||| !!|||!.! !|||||| !|||||| TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuS 266638 : TACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGT : 266695 41 : leValLeuLysAsnThrAsnLysIleLeuProLysIleValIleGlyIleAsnAsnLe : 59 !:!! !...!!. !.!.::!|||:!! !! ! !:!!|||! !||| ! !!! erLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCy 266696 : CACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTG : 266752 60 : uLeuCysSerPheIleLeuIleGlnSerAlaLeuHisIleIleTyrGluGluLysAsp : 78 !! ! !|||! !:!!|||! !!! !!!!|||:!!:!! |||!!::!!..! sSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSer 266753 : CTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGT : 266809 79 : ValLeuLeuArgLeuLysIleLeuGlyLeuIlePhePheSerLeuIleSerLeuMetL : 98 :!!! ! !!:!:!!|||:!:!!!|||! !:!: ! !!!!!!!:!!.!! !!!:! IleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleA 266810 : ATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTA : 266869 99 : ysTyrTrpAlaLeuThrIleHisLysProGluIleLysTyrCysIleGluGlnValGl : 117 !.||| .!!||| !:!!!.!!.. !||||||::: !|||:!!|||!!.:!!|| snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 266870 : ACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCA : 266926 118 : nLeuAspTrpLysGlnValGluMetGluAsnAspArgGluLeuMetLeuLysTyrGly : 136 | !||||||!:! ||| ! !.!.|||!:!:!!:!!||||||||| !!!.! nThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAla 266927 : AACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCG : 266983 137 : MetLeuGlyArgAsnLeuThrIleTyrSerIleLeuPheMetTyrIleGlySerIleT : 156 ! !:!!|||||| !!:!!.!!|||!:!!!! !|||||| ! !||| !:!! ArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuG 266984 : AGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCG : 267043 157 : hrTyrMetSerIleThrGlnTyrAlaMet<->GlyLeuGlnIleAsnGluHisGlnSe : 174 !||| !|||||| !!:!.!!||| !:!!:!!:!!..!.!..!. !! lyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrAr 267044 : GCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAG : 267100 175 : rAsnGlnThrIleArgValLeuIleTyrProThrTyrGlyTyrAsnIleGlnLysSer : 193 !! ! ! !:!: ! !! ! ! ! !! ! ! ! ! :!!.!.! ||| gIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSer 267101 : GATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGC : 267157 194 : ProIleTyrGluIleIleTyrGlyIleGlnPheMetCysGlyTyrValValAspThrI : 213 |||! !!||||||:!! !! ! !||||||:!:! |||!:!:!!|||:!!:!!! ProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerS 267158 : CCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGA : 267217 214 : leThrSerGlyAlaCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGlnIl : 232 !..! !||||||! !.!!|||||||||:!!|||!.!.!!|||||||||||||||:! erValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLe 267218 : GCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCT : 267274 233 : eAspIleIleThrSerArgLeuAspAspIleValAlaGlyGlnPheTyrAsnLysAsn : 251 :..!:!::!:! !! ! !!:!! ! !!:.!!||| ! !!... !!!:!!!.!!. uSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLys 267275 : GAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAG : 267331 252 : LeuSerProAsnIleArgLeuMetAlaIleIleLysHisHisIleArgIleLeuLys : 270 ! ! ! ! !!:!:!! !.!:!!:!!:!!||||||:!:|||:!!|||!:! AsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeuArg 267332 : AACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGAGG : 267390 vulgar: AfOr56 22 270 . KQ414889.1 266637 267390 + 270 M 17 51 G 0 6 M 126 378 G 0 3 M 105 315 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266638 267390 270 + . gene_id 16 ; sequence AfOr56 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266638 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266638 267390 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266638 267390 270 + . alignment_id 16 ; Query AfOr56 ; Align 266638 23 51 ; Align 266695 40 378 ; Align 267076 166 315 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 264 Query range: 22 -> 270 Target range: 262849 -> 263602 23 : TyrValThrLysTyrAsnLysTrpValLeuSerCysIleGlyIleTrpProIle<->< : 41 ||| ! !:!! |||::!|||:!!|||!.! |||||| !||||||:!: TyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerA 262850 : TACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCG : 262907 42 : ->ValLeuLysAsnThrAsnLysIleLeuProLysIleValIleGlyIleAsnAsnLe : 59 !:!!..!!..! !.!.::!|||:!! ! :!!:!!|||! !:!! ! !!! laSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCy 262908 : CCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTG : 262964 60 : uLeuCysSerPheIleLeuIleGlnSerAlaLeuHisIleIleTyrGluGluLysAsp : 78 !||| !! !! !:!!|||! ||| !|||||||||:!! |||! :!!:!! sLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsn 262965 : TCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAAT : 263021 79 : ValLeuLeuArgLeuLysIleLeuGlyLeuIlePhePheSerLeuIleSerLeuMetL : 98 !!! !:!!!:!|||:!!:!!||||||! !:!! ! !!!!!!:!!.!!:!!!!:! PheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleA 263022 : TTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCA : 263081 99 : ysTyrTrpAlaLeuThrIleHisLysProGluIleLysTyrCysIleGluGlnValGl : 117 !.||| !||| !:!!|||!.. !!!:|||:!! !|||:!::!!!!.||||| snTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGl 263082 : ATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCA : 263138 118 : nLeuAspTrpLysGlnValGluMetGluAsnAspArgGluLeuMetLeuLysTyrGly : 136 | !|||||| ||| ! ! !.!.|||!:!...:!!||||||||| !!!.! nGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAla 263139 : GGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCG : 263195 137 : MetLeuGlyArgAsnLeuThrIleTyrSerIleLeuPheMetTyrIleGlySerIleT : 156 ! ! !|||||| !!:!!.!! !! !!!! :!!|||||| ! ! .!!! !!!: LysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetC 263196 : AAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGT : 263255 157 : hrTyrMetSerIleThrGlnTyrAlaMetGlyLeuGlnIleAsnGluHisGlnSerAs : 175 ! ! !:!!||| !!:!.!!! !:!! |||.!.!!: !.!...!!. ysLysCysLeuValThrAlaPheThrThrGlnVal---IleGluAspGlyAsnGluTh 263256 : GCAAGTGCCTAGTCACAGCGTTCACTACACAGGTG---ATCGAGGACGGTAACGAGAC : 263309 176 : nGlnThrIleArgValLeuIleTyrProThrTyrGly<-><->TyrAsnIleGlnLys : 192 !::!! !:!!|||:!!||| ! !|||..!||| ! ! :!!.!.! ! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 193 : SerProIleTyrGluIleIleTyrGlyIleGlnPheMetCysGlyTyrValValAspT : 212 !:!|||! !!||||||.!! !!.!! ||||||:!!! |||!:!:!!||| !. AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 213 : hrIleThrSerGlyAlaCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGl : 231 !!! !||| !||||||! !|||:!!.!!|||:!!|||!.! !|||||||||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 232 : nIleAspIleIleThrSerArgLeuAspAspIleValAlaGlyGlnPheTyrAsnLys : 250 |:!::!!:!::!:! !||| !!:!! !!:.!!||| ! !... !!.!.!!. nLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsn 263484 : GTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAAT : 263540 251 : AsnLeuSerProAsnIleArgLeuMetAlaIleIleLysHisHisIleArgIleLeuL : 270 !!. ! ! ! !! !..!:!! !.!|||:!!:!!||||||:!:|||:!!|||! LysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeuA 263541 : AAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTGA : 263600 271 : ys : 270 :! rg 263601 : GG : 263602 vulgar: AfOr56 22 270 . KQ414889.1 262849 263602 + 264 M 18 54 G 0 6 M 127 381 G 1 0 M 19 57 G 0 6 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262850 263602 264 + . gene_id 17 ; sequence AfOr56 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262850 263602 . + . KQ414889.1 exonerate:protein2genome:local exon 262850 263602 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 262850 263602 264 + . alignment_id 17 ; Query AfOr56 ; Align 262850 23 54 ; Align 262910 41 381 ; Align 263291 169 57 ; Align 263354 188 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 257 Query range: 17 -> 243 Target range: 204221 -> 204902 18 : GluLysAspIleAlaTyrValThrLysTyrAsnLysTrpValLeuSerCysIleGlyI : 37 |||:!!|||:!: !|||!.!|||:::!:! ||| !:!!|||.!! :!!||| GluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyA 204222 : GAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTG : 204279 38 : leTrpProIleValLeuLysAsnThr<-><->AsnLysIleLeuProLysIleValIl : 54 ||||||||| !:!!!!.::!:!! !..!:!:!!:!!! !::!|||! ! laTrpProIleProValAsnSerSerProPheThrArgLeuValArgArgIleGluHi 204280 : CGTGGCCGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACA : 204336 55 : eGlyIleAsnAsnLeuLeuCysSerPheIleLeuIleGlnSerAlaLeuHisIleIle : 73 !! !:!!!.! ...||| ...:!::!!:!!! .!! !|||:!!:!:.!! sValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPhe 204337 : CGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTC : 204393 74 : TyrGluGluLysAspValLeuLeuArgLeuLysIleLeuGlyLeuIlePhePheSerL : 93 :!!||||||:!!! ! !:!!||||||||||||||||||! !||| ! !!!! LeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysS 204394 : CTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCA : 204453 94 : euIleSerLeuMetLysTyrTrpAlaLeuThrIleHisLysProGluIleLysTyrCy : 112 !|||..!!!!.!.||||||! !.!:!! ! !!..! !:!!|||:!! ! ! erIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSe 204454 : GCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAG : 204510 113 : sIleGluGlnValGlnLeuAspTrpLysGlnValGluMetGluAsnAspArgGluLeu : 131 !:!:.!. :!!::!! !||||||! !:!!!.! ! |||||| ||| !:!! rLeuAsnThrIleArgArgAspTrpIleGluAlaThrAspGluAsn---ArgLeuIle 204511 : TTTGAACACCATCAGACGCGACTGGATAGAGGCTACGGATGAAAAT---CGGTTGATT : 204564 132 : MetLeuLysTyrGlyMetLeuGlyArgAsnLeuThrIleTyrSerIleLeuPheMetT : 151 .!.! !..! ! !.!! !:!!||||||!..:!! !:!: !:!! ! ! !|||| PheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetT 204565 : TTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGT : 204624 152 : yrIleGlySerIleThrTyrMetSerIleThrGlnTyrAlaMetGlyLeuGlnIleAs : 170 || !|||.!!:!: !|||! !!!!||| !! ! !! ||| ! :!!!. yrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleValTh 204625 : ACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTAAC : 204681 171 : nGluHisGlnSerAsnGlnThrIleArgValLeuIleTyrProThrTyr<-><->Gly : 187 . ! ..!||| ||||||||| !||| ! !|||..!||| r------ProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhe 204682 : A------CCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttc : 204732 188 : TyrAsnIleGlnLysSerProIleTyrGluIleIleTyrGlyIleGlnPheMetCysG : 207 :::||| |||:::||||||! !|||||||||:!!!:! !:!:|||.!!|||..!| PheAsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaG 204733 : tttaacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTG : 204792 208 : lyTyrValValAspThrIleThrSerGlyAlaCysGlyLeuAlaAlaLeuPheValTh : 226 ||!:!|||..! !!.!!:!!! !||||||.!!||||||:!!..!|||||||||||| lyPheValThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLe 204793 : GTTTTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCT : 204849 227 : rHisAlaCysGlyGlnIleAspIleIleThrSerArgLeuAspAspIleVal : 243 !|||||||||.!!..!:!: |||:!:..!!:!!:!:!!:!!! :!!||| uHisAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuVal 204850 : CCACGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTG : 204902 vulgar: AfOr56 17 243 . KQ414889.1 204221 204902 + 257 M 28 84 G 0 6 M 82 246 G 1 0 M 42 126 G 2 0 M 14 42 G 0 6 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204222 204902 257 + . gene_id 18 ; sequence AfOr56 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204222 204902 . + . KQ414889.1 exonerate:protein2genome:local exon 204222 204902 . + . insertions 12 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 204222 204902 257 + . alignment_id 18 ; Query AfOr56 ; Align 204222 18 84 ; Align 204312 46 246 ; Align 204558 129 126 ; Align 204684 173 42 ; Align 204732 187 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 248 Query range: 303 -> 393 Target range: 280091 -> 280435 304 : AspTrpGluGlnLysAsnIleIleSerLeuThrSerTyrIleLeuLeuLeuIleSerL : 323 !!:|||||||||!!.:!! !|||.!! ! !!!!|||:!!:!!!!!|||||||||| GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerL 280092 : GAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTT : 280149 324 : euThrPheAsnMetPheLeuLeuCysTyrIleGlyAspLeuLeuIleGlnLys >>> : 341 |||||||||||:!:|||:!!|||||||||||||||!!::!!||| !:!!::: euThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 280150 : TAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt... : 280205 342 : > Target Intron 1 >>>> SerGlyAsnIleGlyValValValPheMetIleA : 352 74 bp !!! !!!.:!!|||||| !..!!:!||||||| ++CysLeuLysValGlyValSerThrTyrMetIleA 280206 : ......................agTGCTTAAAAGTCGGCGTGTCAACTTACATGATCG : 280310 353 : spTrpPheHisLeuProThrLysThrIleGlnAsnLeuIleLeuIleMetAlaMetSe : 371 |||||!:!!.!|||||| !|||! ! !|||..!||||||||||||.!.|||:!!|| spTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaValSe 280311 : ACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCGTGTC : 280367 372 : rAsnAsnProAlaLysLeuThrValGlyArgIleValAspLeuSerLeuSerThrPhe : 390 ||||::! !! !|||||||||!.!|||!:!|||:!!|||||||||||||||!:!||| rAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPhe 280368 : GAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTC : 280424 391 : GlyAsnVal : 393 !!!:!||| CysSerVal 280425 : TGCAGCGTG : 280435 vulgar: AfOr56 303 393 . KQ414889.1 280091 280435 + 248 M 37 111 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280092 280435 248 + . gene_id 19 ; sequence AfOr56 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280435 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280435 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280092 280435 248 + . alignment_id 19 ; Query AfOr56 ; Align 280092 304 111 ; Align 280277 341 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 235 Query range: 8 -> 211 Target range: 294645 -> 295263 9 : IleAsnGluProArgAsnProAsnTyrGluLysAspIleAlaTyrValThrLysTyrA : 28 |||:!!..! !!! !:!! !!.! !!..!!!.|||:!:||| !! ! !|||||| IleAspArgThrMetAspAspThrAsnArgAsnAspValAlaAsnSerLeuLysTyrC 294646 : ATAGACAGAACCATGGACGATACTAACAGAAACGACGTGGCGAACAGCCTCAAGTATT : 294703 29 : snLysTrpValLeuSerCysIleGlyIleTrpProIleValLeuLysAsnThr<-><- : 46 !::! !!:!!|||!.! ||||||:!!||||||:!!:!!! !!..:!!||| ysArgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrSerHisThrSerLy 294704 : GTCGAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACAGTCACACCAGCAA : 294760 47 : ><->AsnLysIleLeuProLysIleValIleGlyIleAsnAsnLeuLeuCysSerPhe : 63 ||||||:!!||| !!! !|||:!!|||!.! !!..||| ! !||| sLeuAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLeuThrValLeuPhe 294761 : ACTGAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTTGACCGTACTGTTC : 294817 64 : IleLeuIleGlnSerAlaLeuHisIleIleTyrGluGluLysAspValLeuLeuArgL : 83 :!!|||:!:! !!!!!.!! ! ! !:!!!:!.!.! |||:::||| |||::!: ValLeuValProCysGlyTyrPheCysValPheHisValLysAsnValLysLeuLysM 294818 : GTTTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaacgtgaaattgaaGA : 294877 84 : euLysIleLeuGlyLeuIlePhePheSerLeuIleSerLeuMetLysTyrTrpAlaLe : 102 !!|||:!!||||||! !:!!.!.!:!|||:!!:!!|||:!!:!:!:!||| ! ..!|| etLysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuArgTyrSerCysLe 294878 : TGAAACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCAGGTACAGCTGTCT : 294934 103 : uThrIleHisLysProGluIleLysTyrCysIleGluGlnValGlnLeuAspTrpLys : 121 |..!:!: ! ! !|||! !.!!|||:!!|||||||||.!.:!!:!! !||||||||| uValLeuLysThrProAlaPheLysHisCysIleGluAspIleGluAsnAspTrpLys 294935 : AGTTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGAGAACGATTGGAAG : 294991 122 : GlnValGluMetGluAsnAspArgGluLeuMetLeuLysTyrGlyMetLeuGlyArgA : 141 !:!!!!:! !.!. !!|||! !:!!|||:!!||| !!!.!|||:!! !!:!! LeuIleAspAsnProGluHisArgAlaIleMetIleLysAsnAlaMetValThrGlnA 294992 : TTGATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCGATGGTCACGCAGA : 295051 142 : snLeuThrIleTyrSerIleLeuPheMetTyrIleGlySerIleThrTyrMetSerIl : 160 ..:!!|||:!! !! !! !:!!.!.!!:|||! !..!:!!:!::!!||| :!!|| rgMetThrValAlaPheThrIleIleIleTyrSerSerAlaValSerTyrHisAlaIl 295052 : GGATGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGTCGTATCACGCCAT : 295108 161 : eThrGlnTyrAlaMetGlyLeuGlnIleAsnGluHisGlnSerAsnGlnThrIleArg : 179 |... ::: ... ! |||:!!:!!!.!|||.!.||||||||| eValProPhePheSerAsnAlaLeu------GluAsnLysLysAsnAsnThrIleArg 295109 : TGtgccatttttttcaaacgctTTG------GAGAACAAGAAGAATAATACGATTCGT : 295159 180 : ValLeuIleTyrProThrTyrGlyTyrAsnIleGln<-><->LysSerProIleTyrG : 197 !.!||| ! !||| !|||! !! !:!!.!. ...||||||! !|||| AlaLeuProIleProGlyTyrGluLeuPheValAspAlaTyrSerSerProThrTyrG 295160 : GCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGTCCTACCTACG : 295219 198 : luIleIleTyrGlyIleGlnPheMetCysGlyTyrValValAsp : 211 |||||||| ! !! |||:!:! !..!!:! !!|||:!! luIleIleArgThrHisLeuPheValTyrSerPhePheValAsn 295220 : AGATCATAAGAACTCATCTCTTTGTTTACTCGTTCTTCGTCAAC : 295263 vulgar: AfOr56 8 211 . KQ414889.1 294645 295263 + 235 M 37 111 G 0 9 M 123 369 G 2 0 M 21 63 G 0 6 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294646 295263 235 + . gene_id 20 ; sequence AfOr56 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294646 295263 . + . KQ414889.1 exonerate:protein2genome:local exon 294646 295263 . + . insertions 15 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 294646 295263 235 + . alignment_id 20 ; Query AfOr56 ; Align 294646 9 111 ; Align 294766 46 369 ; Align 295135 171 63 ; Align 295204 192 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 229 Query range: 22 -> 285 Target range: 236852 -> 237644 23 : TyrValThrLysTyrAsnLysTrpValLeuSerCysIleGlyIleTrpProIleValL : 42 ||| ! !:!!!::|||::!|||!.!:!!!.! !!||||||! !|||||| !!! TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheS 236853 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCT : 236910 43 : euLysAsnThrAsnLysIleLeuProLysIleValIleGlyIleAsnAsnLeuLeuCy : 61 !..!||| !.!.!:!! !:!! !!::!|||:!!! !! !||| ! !! ! ! erSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIl 236911 : CGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAAT : 236967 62 : sSerPheIleLeuIleGlnSerAlaLeuHisIleIleTyrGluGluLysAspValLeu : 80 !||| :!!|||! !!!:!!||||||:!!!!: |||:!! ! ! !!! ! eLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyr 236968 : ACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTAC : 237024 81 : LeuArgLeuLysIleLeuGlyLeuIlePhePheSerLeuIleSerLeuMetLysTyrT : 100 !!:!:!!||||||||||||! !:!: ! !!!!:!!.!!!!!:!!!!:!..||| ThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrT 237025 : ACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACA : 237084 101 : rpAlaLeuThrIleHisLysProGluIleLysTyrCysIleGluGlnValGlnLeuAs : 119 !||| !:!:!..::: ! |||::::!!! !.!!.!.!!.:!!:!! !|| hrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAs 237085 : CCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGA : 237141 120 : pTrpLysGlnValGluMetGluAsnAspArgGluLeuMetLeuLysTyrGlyMetLeu : 138 ||||!:! !..! :::... :::|||:::||||||||||||!.!! !!! pTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPhe 237142 : TTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTT : 237198 139 : GlyArgAsnLeuThrIleTyrSerIleLeuPheMetTyrIleGlySerIleThrTyrM : 158 .!!||| !! !.!!|||! !!!!! :!!|||!!::!! !|||! !:!! !||| SerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrC 237199 : AGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATT : 237258 159 : etSerIleThrGlnTyrAlaMetGlyLeuGlnIleAsnGluHisGlnSerAsnGlnTh : 177 !!!:||| !! !.!!! ! !:!! :!: !! !:!!:!!!!!!.. ! ysValMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThr---Il 237259 : GTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACG---AT : 237312 178 : rIleArgValLeuIleTyrProThrTyrGly<-><->TyrAsnIleGlnLysSerPro : 194 !:!:||||||||| !! |||! !||| ! ! :!!.!.! !!:! !! eLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThr 237313 : CTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACT : 237369 195 : IleTyrGluIleIleTyrGlyIleGlnPheMetCysGlyTyrValValAspThrIleT : 214 !!: !!!!:|||:!! ! ! !||||||:!:! !|||!:!:!!!.!:!!!.!! !. MetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerA 237370 : ATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTG : 237429 215 : hrSerGlyAlaCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGlnIleAs : 233 !!! !.!!!.! .!!|||.!!::! !.!...!:!!||||||! !||||||:!:.. laIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSe 237430 : CGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAG : 237486 234 : pIleIleThrSerArgLeuAspAspIleValAlaGlyGlnPheTyrAsnLysAsnLeu : 252 !:!::!!! !! ! !:!!!!:|||.!!|||::!! ! ! !!.. !!!. ! rValValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAsp 237487 : CGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGAC : 237543 253 : SerProAsnIleArgLeuMetAlaIleIleLysHisHisIleArgIleLeuLysPheS : 272 ..!! ! ! !..!:!! !.!!|||:!::!!.!.|||:!:|||:!:||||||! AspHisPheAspGluIleProThrIleValGluGluHisLeuArgValLeuLys***V 237544 : GATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAG : 237603 273 : erAlaValValGluThrValLeuGlnGluValPhePheLeu : 285 !..!:!!:!!!!: !:!!|||! ! !! ! ! |||||| alCysLeuLeuAspLeuIleLeuLeuMetGlyValPheLeu 237604 : TATGTTTGTTGGATTTGATTTTGCTGATGGGTGTGTTTCTC : 237644 vulgar: AfOr56 22 285 . KQ414889.1 236852 237644 + 229 M 153 459 G 1 0 M 11 33 G 0 6 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236853 237644 229 + . gene_id 21 ; sequence AfOr56 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236853 237644 . + . KQ414889.1 exonerate:protein2genome:local exon 236853 237644 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 236853 237644 229 + . alignment_id 21 ; Query AfOr56 ; Align 236853 23 459 ; Align 237312 177 33 ; Align 237351 188 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 212 Query range: 295 -> 393 Target range: 214605 -> 215022 296 : LeuLeuGluTyrTyrCysIleAlaAspTrpGluGlnLysAsnIleIleSerLeuThrS : 315 :::::::::::: ::: :!:|||.!...!!!.|||:!!! !!!! !..!! IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 316 : erTyrIleLeuLeuLeuIleSerLeuThrPheAsnMetPheLeuLeuCysTyrIleGl : 334 !!|||:!::!!|||! !||||||||||||||||||:::|||:::...||||||||||| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 335 : yAspLeuLeuIleGlnLys >>>> Target Intron 1 >>>> SerGlyAsnI : 344 |!!:|||:!! !:!!:!! 123 bp !!! !!!.: yGluLeuValSerGluGln++ ++CysLysLysV 214721 : CGAGCTTGTGTCTGAACAGgt.........................agTGCAAAAAGG : 214873 345 : leGlyValValValPheMetIleAspTrpPheHisLeuProThrLysThrIleGlnAs : 363 !!|||! !||| !!:!||||||!!:|||!:!!..|||||| !!!.! !! ! alGlyGluValSerTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCy 214874 : TCGGAGAAGTATCGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTG : 214930 364 : nLeuIleLeuIleMetAlaMetSerAsnAsnProAlaLysLeuThrValGlyArgIle : 382 !! !||||||||||||||||||||||||::: !!!.!|||!!!|||!.!|||!.!!!: sCysIleLeuIleMetAlaMetSerAsnSerSerValLysPheThrAlaGlyAsnMet 214931 : TTGCATTTTGATCATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATG : 214987 383 : ValAspLeuSerLeuSerThrPheGlyAsnVal : 393 |||!!:||||||:!!|||||||||.!!!:!||| ValGluLeuSerIleSerThrPheSerSerVal 214988 : GTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215022 vulgar: AfOr56 295 393 . KQ414889.1 214605 215022 + 212 M 45 135 5 0 2 I 0 119 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 215022 212 + . gene_id 22 ; sequence AfOr56 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 215022 212 + . alignment_id 22 ; Query AfOr56 ; Align 214606 296 135 ; Align 214864 341 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 212 Query range: 303 -> 398 Target range: 272836 -> 273191 304 : AspTrpGluGlnLysAsnIleIleSerLeuThrSerTyrIleLeuLeuLeuIleSerL : 323 :!:||| .!. ! :!!.!! |||||||||!!!|||.!!:!!:!!|||||||||: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 324 : euThrPheAsnMetPheLeuLeuCysTyrIleGlyAspLeuLeuIleGlnLys >>> : 341 !:|||||||||:::|||:::::!||||||||||||!!::!!|||! :!!!:! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 342 : > Target Intron 1 >>>> SerGlyAsnIleGlyValValValPheMetIleA : 352 70 bp ...||||||! !||||||!:!|||! : ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 353 : spTrpPheHisLeuProThrLysThrIleGlnAsnLeuIleLeuIleMetAlaMetSe : 371 !!|||!:!:!!|||||| !||| !|||! :!!||||||||||||!!::!!! !! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 372 : rAsnAsnProAlaLysLeuThrValGlyArgIleValAspLeuSerLeuSerThrPhe : 390 !!:! ! ! !|||:!!|||!.!|||||||||||| !:!!|||:!!! !|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 391 : GlyAsnValLeuLysThrThrPhe : 398 |||:!!|||! ... ||| GlyAspValArgSerGlnLeuPhe 273166 : GGCGATGTACgttctcaattattt : 273191 vulgar: AfOr56 303 398 . KQ414889.1 272836 273191 + 212 M 37 111 5 0 2 I 0 66 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273191 212 + . gene_id 23 ; sequence AfOr56 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273191 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273191 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273191 212 + . alignment_id 23 ; Query AfOr56 ; Align 272837 304 111 ; Align 273018 341 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 303 -> 393 Target range: 286878 -> 287222 304 : AspTrpGluGlnLysAsnIleIleSerLeuThrSerTyrIleLeuLeuLeuIleSerL : 323 !!:|||||||||!...!.! !|||.!! !! !!!!||| ! !||||||:!!|||! GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerP 286879 : GAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTT : 286936 324 : euThrPheAsnMetPheLeuLeuCysTyrIleGlyAspLeuLeuIleGlnLysSerGl : 342 !!|||||||||:!:|||:!!|||||||||||||||!!::!!||| !:!!::: heThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGlnValPh 286937 : TCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggtatt : 286993 343 : yAsnIleGlyValValValPhe{Me} >>>> Target Intron 1 >>>> {t} : 350 ||| ..!:!!!:!{ } 74 bp {!} ePheIleThrSerThrIleTyr{**}-+ +-{*} 286994 : tttcattacttcaACGATCTAT{TA}tt.........................at{G} : 287093 351 : IleAspTrpPheHisLeuProThrLysThrIleGlnAsnLeuIleLeuIleMetAlaM : 370 |||||||||!:!!.!|||||| !|||||| !|||..!||||||||||||.!.|||: IleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaV 287094 : ATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCG : 287151 371 : etSerAsnAsnProAlaLysLeuThrValGlyArgIleValAspLeuSerLeuSerTh : 389 !!||||||::! !! !|||||||||!.!|||!:!|||:!!|||||||||||||||!: alSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSe 287152 : TGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAG : 287208 390 : rPheGlyAsnVal : 393 !||| !!!:!||| rPheCysSerVal 287209 : CTTCTGCAGCGTG : 287222 vulgar: AfOr56 303 393 . KQ414889.1 286878 287222 + 205 M 46 138 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286879 287222 205 + . gene_id 24 ; sequence AfOr56 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286879 287018 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 287018 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287019 287020 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 287019 287092 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287091 287092 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 287093 287222 . + . KQ414889.1 exonerate:protein2genome:local exon 287093 287222 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286879 287222 205 + . alignment_id 24 ; Query AfOr56 ; Align 286879 304 138 ; Align 287094 351 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 199 Query range: 303 -> 393 Target range: 206050 -> 206401 304 : AspTrpGluGlnLysAsnIleIleSerLeuThrSerTyrIleLeuLeuLeuIleSerL : 323 !!:||||||.!.!!.|||! !! !:!!:!!! ! !|||||| !|||! !||||||! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 324 : euThrPheAsnMetPheLeuLeuCysTyrIleGlyAspLeuLeuIleGlnLys >>> : 341 !|||||| !:!:|||:!!|||||||||||||||.!.|||||||||.!.:!! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 342 : > Target Intron 1 >>>> SerGlyAsnIleGlyValValValPheMetIleA : 352 81 bp !:! ! !:!:|||:!!..! !! !! !:!:: ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 353 : spTrpPheHisLeuProThrLysThrIleGlnAsnLeuIleLeuIleMetAlaMetSe : 371 !!|||!:!!.!||||||!.!!:! ! !::::!:!!|||||||||!!:|||||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 372 : rAsnAsnProAlaLysLeuThrValGlyArgIleValAspLeuSerLeuSerThrPhe : 390 |||| !!||| !|||||||||!.!|||!:!!!: !!!!::!!||||||:!!!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 391 : GlyAsnVal : 393 !:!!||| ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: AfOr56 303 393 . KQ414889.1 206050 206401 + 199 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 199 + . gene_id 25 ; sequence AfOr56 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 199 + . alignment_id 25 ; Query AfOr56 ; Align 206051 304 111 ; Align 206243 341 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 331 -> 399 Target range: 224472 -> 224676 332 : TyrIleGlyAspLeuLeuIleGlnLysSerGlyAsnIleGlyValValValPheMetI : 351 |||.!! !...|||!!!.!!! ::: ...|||||| !||| !!:!|||| TyrPheLeuSerLeuPhePheProGlnCysGluLysIleGlyGlnValSerTyrMetI 224473 : TATTTTTTATCGCTATTTTTTCCtcagtgtgaaaaaattggacaAGTGTCGTACATGA : 224530 352 : leAspTrpPheHisLeuProThrLysThrIleGlnAsnLeuIleLeuIleMetAlaMe : 370 ||||||||!:!!..||| !! !!!.! !! !! ! !! !|||||||||!!:||||| leAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMe 224531 : TCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGAT : 224587 371 : tSerAsnAsnProAlaLysLeuThrValGlyArgIleValAspLeuSerLeuSerThr : 389 |||||||::! !! !|||||||||!.!|||!.!!!:|||!!:|||!!!|||!!!||| tSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThr 224588 : GTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACT : 224644 390 : PheGlyAsnValLeuLysThrThrPheVal : 399 ||||||:!!||| !! |||! ! !||| PheGlyAspValSerIleThrIleThrVal 224645 : TTCGGTGACGTAAGTATCACAATCACCGTC : 224676 vulgar: AfOr56 331 399 . KQ414889.1 224472 224676 + 126 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224473 224676 126 + . gene_id 26 ; sequence AfOr56 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224473 224676 . + . KQ414889.1 exonerate:protein2genome:local exon 224473 224676 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224473 224676 126 + . alignment_id 26 ; Query AfOr56 ; Align 224473 332 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 188 -> 270 Target range: 202718 -> 202960 189 : AsnIleGlnLysSerProIleTyrGluIleIleTyrGlyIleGlnPheMetCysGlyT : 208 :!!:!!::! ! ||||||:!: !!||||||.!!!:!..!|||!:!.!!:!:..!! ! AspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleValAlaValI 202719 : GATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAGCTGTCA : 202776 209 : yrValValAspThrIleThrSerGlyAlaCysGlyLeuAlaAlaLeuPheValThrHi : 227 !:!!:!! !! !:!!||| !||||||||| !!|||.!!|||||||||!.!..!|| leLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAlaValHi 202777 : TCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGCGGTTCA : 202833 228 : sAlaCysGlyGlnIleAspIleIleThrSerArgLeuAspAspIleValAlaGlyGln : 246 |! !|||||||||!!:|||:!!:!:! !:!! !!|||!!: !!:!::!!! !|||!:: sAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMetAspGlyArg 202834 : CGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGATGGTCGT : 202890 247 : Phe--TyrAsnLysAsnLeuSerProAsnIleArgLeuMetAlaIleIleLysHisHi : 265 ! ##|||.!. !!|||:!! ||| !|||:!!:!!.!!|||:!:!..!!.|| Ser##TyrGlu***AsnVal------AsnGlyArgMetValThrIleValSerGlnHi 202891 : TCGGATATGAGTAAAATGTG------AATGGCAGAATGGTGACCATCGTGAGCCAACA : 202943 266 : sIleArgIleLeuLys : 270 |||||||||||||||| sIleArgIleLeuLys 202944 : CATACGGATACTGAAA : 202960 vulgar: AfOr56 188 270 . KQ414889.1 202718 202960 + 119 M 59 177 F 0 2 M 5 15 G 2 0 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202719 202960 119 + . gene_id 27 ; sequence AfOr56 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202719 202960 . + . KQ414889.1 exonerate:protein2genome:local exon 202719 202960 . + . insertions 0 ; deletions 2 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local similarity 202719 202960 119 + . alignment_id 27 ; Query AfOr56 ; Align 202719 189 177 ; Align 202898 248 15 ; Align 202913 255 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 336 -> 402 Target range: 292380 -> 292578 337 : LeuIleGlnLysSerGlyAsnIleGlyValValValPheMetIleAspTrpPheHisL : 356 :!!:!: ! :!!.!!.!!.!.|||!.! !!.! !!:! ! !!!:|||!:!:!!| ValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnL 292381 : GTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATC : 292438 357 : euProThrLysThrIleGlnAsnLeuIleLeuIleMetAlaMetSerAsnAsnProAl : 375 |||||! !::!! ! !!:::!!:!!:!!|||:!::!:|||!!:!!!!!.:!!||| euProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIl 292439 : TGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGAT : 292495 376 : aLysLeuThrValGlyArgIleValAspLeuSerLeuSerThrPheGlyAsnValLeu : 394 !|||||||||!.!|||!:!||| !!! !|||||||||!:!||||||||| !|||! ! eLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArg 292496 : CAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGT : 292552 395 : LysThrThrPheValTyrLeuAsn : 402 :!!:!!! !.!.|||! :!!:!! GluSerLysLeuValLeuIleHis 292553 : GAATCAAAACTAGTCTTGATACAC : 292578 vulgar: AfOr56 336 402 . KQ414889.1 292380 292578 + 116 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292381 292578 116 + . gene_id 28 ; sequence AfOr56 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292381 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292381 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292381 292578 116 + . alignment_id 28 ; Query AfOr56 ; Align 292381 337 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 303 -> 343 Target range: 224323 -> 224443 304 : AspTrpGluGlnLysAsnIleIleSerLeuThrSerTyrIleLeuLeuLeuIleSerL : 323 :::|||.........:!!:!!! !||| !..!!!!|||.!!:!!||||||!!:|||| GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 324 : euThrPheAsnMetPheLeuLeuCysTyrIleGlyAspLeuLeuIleGlnLysSerGl : 342 |||||||||||:::|||:::...||||||||||||!!:|||:!! !:!!::: euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlnValLy 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggtgaa : 224438 343 : yAsn : 343 ||| sAsn 224439 : aaat : 224443 vulgar: AfOr56 303 343 . KQ414889.1 224323 224443 + 108 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224443 108 + . gene_id 29 ; sequence AfOr56 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224324 224443 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224443 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224443 108 + . alignment_id 29 ; Query AfOr56 ; Align 224324 304 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 303 -> 340 Target range: 264537 -> 264648 304 : AspTrpGluGlnLysAsnIleIleSerLeuThrSerTyrIleLeuLeuLeuIleSerL : 323 !!:||||||... ! :::||| :::||||||!!!|||.!!:!!:!!|||||||||: GluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerM 264538 : GAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATACTGATATCAA : 264595 324 : euThrPheAsnMetPheLeuLeuCysTyrIleGlyAspLeuLeuIleGlnLys : 340 !! ! !|||!!:||||||:!!||||||||||||!!::!!|||! !:!!::: etCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGln 264596 : TGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcag : 264648 vulgar: AfOr56 303 340 . KQ414889.1 264537 264648 + 106 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264538 264648 106 + . gene_id 30 ; sequence AfOr56 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264538 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264538 264648 106 + . alignment_id 30 ; Query AfOr56 ; Align 264538 304 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 342 -> 402 Target range: 230253 -> 230433 343 : AsnIleGlyValValValPheMetIleAspTrpPheHisLeuProThrLysThrIleG : 362 !!.:!!|||! ! ! !!:!||||||!!:|||!:!!..||| !! !!!.! !! ! LysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyAsnLysLysL 230254 : AAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAAACAAGAAGC : 230311 363 : lnAsnLeuIleLeuIleMetAlaMetSerAsnAsnProAlaLysLeuThrValGlyAr : 381 !! !|||||||||!!:|||||||||||| ! !!.!!|||!!!|||!.!|||!. euCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheThrAlaGlyAs 230312 : TCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTACAGCAGGAAA : 230368 382 : gIleValAspLeuSerLeuSerThrPheGlyAsnValLeuLysThrThrPheValTyr : 400 !!!:|||!!:||||||:!!!:!||||||.!!:!!||| !! ! ! !! !|||||| nMetValGluLeuSerValAsnThrPheSerAspValSerIleIlePheSerValTyr 230369 : CATGGTTGAATTATCCGTAAACACTTTCAGCGACGTAAGTATCATATTCTCTGTTTAC : 230425 401 : LeuAsn : 402 !||| ThrAsn 230426 : ACGAAT : 230433 vulgar: AfOr56 342 402 . KQ414889.1 230253 230433 + 105 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230254 230433 105 + . gene_id 31 ; sequence AfOr56 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230254 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230254 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230254 230433 105 + . alignment_id 31 ; Query AfOr56 ; Align 230254 343 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1003 Query range: 0 -> 404 Target range: 256601 -> 258738 1 : MetSerAspAspLeuValGluIleGluLysLysPheGlySerLeuAsnGluTyrSerI : 20 |||!!!:!!!!:!!!!.!! !:!!:!!! !!!.||| !|||! !!:!!!:||||||: MetThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerL 256602 : ATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTC : 256659 21 : leGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProThrSerLeuCysTh : 39 !!|||!!.|||||||||.!!|||||||||||||||||||||||| !!|||! !! !|| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 256660 : TCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCAC : 256716 40 : rThrArgAsnGluLysIleIleSerLysIleLeuIleIleLeuCysTrpSerPheSer : 58 ||||! ! !|||::!! !:!!|||! :!!|||! !|||:!!|||!::.!!! !! ! rThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIle 256717 : TACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATA : 256773 59 : LeuPheThrLeuIleProGlyLeuLeuHisPheLeuLeuGluLysGluAspIleTyrL : 78 |||||||||||||||||| !!||||||||| ! !!!|||!!: ! !!:..!.!!|||: LeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrM 256774 : TTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAca : 256833 79 : euLysLeuLysThrValGlyProLeuSerHisTyrCysValGlyGlyPheAsnTyrAl : 97 ::|||:::|||... ||||||:!!||||||!:: !:!!.!! !! !||||||.! etLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrTh 256834 : tgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACAC : 256890 98 : aIleLeuLeuLeuArgGluAsnAspIleLeuHisCysIleGluHisIleArgValAsp : 116 !:!:|||||||||!:!! !!!.||||||! !:!!|||:!!|||||||||..!..!||| rLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAsp 256891 : GTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGAT : 256947 117 : TrpSerIleIleThrLysLysGlnAspGlnGlnValMetLeuLysTyrAlaLysIleG : 136 |||!!!!!::!:! !!:!:!!:!!|||||||||||||||:!!||| !!|||!:!.!!| TrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheG 256948 : TGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCG : 257007 137 : lyArgTyrIleAlaAlaPheCysThrAlaPheLeuGlnGlyGlyValLeuCysThrCy : 155 ||||||||:!:|||.!!||||||.!!|||.!!:!!|||.!!||||||...||| lyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePh 257008 : GTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttctt : 257064 156 : sLeuAlaLeuGlyAlaPheLysThrThrIleLysAsnGlyAsnGluThrIleGluIle : 174 ::!:!!! !!.! ! !! ! !! !||| ! ||||||||||||! :!: eValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleVal 257065 : cgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTG : 257121 175 : TyrSerLeuLeuCysProAlaTyrLys<-><->PheProValGlnThrAsnProThrH : 192 !|||! ! ! !!!.!|||||| !!. !|||.!. !!:!||||||: ArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrA 257122 : CGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGA : 257181 193 : isAspIleIleLeuGlyThrGlnLeuLeuSerAlaPheIleAsnSerSerSerAlaAl : 211 !!!!:|||:!::!! !! !||| !! !|||:!!.!!||| !!!!!!|||.!!!. snGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrVa 257182 : ACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGT : 257238 212 : aGlyAlaPheSerLeuAlaAlaValPheAlaSerHisAlaLeuGlyGlnLeuAsnIle : 230 !.!! !||||||||||||||||||||||||!!!||||||! !|||||||||!.!:!: lSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrVal 257239 : TAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTG : 257295 231 : MetValAlaTrpIleAsnGluPheValAsnArgProMetGluSerAsnAsnAspAlaT : 250 :!::!!:!!||||||!..||||||||||||..! !!! !.!. ! ...... LeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheP 257296 : CTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttc : 257355 251 : yrValAsnLysIleSerIleIleValGluHisHisLeuArgValLeu{Se} >>>> : 266 !!!.:!!|||.!!:!:|||||||||||||||||||||||||||{||} roPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Se}++ 257356 : ctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt..... : 257407 267 : Target Intron 1 >>>> {r}PheIleThrHisIleGluHisLeuMetAsnPro : 277 76 bp {|}||||||:!!:!!||||||.!.:!!||||||! ! ++{r}PheIleSerTyrIleGluGluValMetAsnArg 257408 : ....................ag{T}TTCATATCATATATCGAGGAAGTGATGAACCGA : 257512 278 : IleCysPheMetGluMetPheLysCysMetValGlyMetCysMetProSerTyrTyrI : 297 |||||||||:!:|||:!!|||!:!|||! !:!!!.!!!:||||||! !.!!||||||| IleCysPheLeuGluLeuPheArgCysThrLeuAlaIleCysMetLeuGlyTyrTyrI 257513 : ATATGTTTTTTAGAGTTGTTTAGATGCACGCTGGCTATATGCATGCTGGGATACTACA : 257572 298 : leLeuAla >>>> Target Intron 2 >>>> GluTrpSerGluHisAsnIle : 306 |||||||| 684 bp ||||||||| !!..:::||| leLeuAla++ ++GluTrpSerThrGlnAspIle 257573 : TTCTTGCGgt.........................aggaATGGTCTACGCaagatatt : 258283 307 : GlnAsnLeuAlaValTyrValMetIleIleIleSerMetThrCysAsnIlePheLeuI : 326 |||||||||::: ||| !!||||||:!!||||||:::::: |||||||||:::| GlnAsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValI 258284 : caaaatttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaa : 258343 327 : leAsnTyrIleGlyGluIleLeuThrGluGln >>>> Target Intron 3 >>> : 337 || ||||||||||||||||||||||||||| 90 bp leCysTyrIleGlyGluIleLeuThrGluGln++ 258344 : tatgttACATAGGTGAAATATTAACAGAACAGgt........................ : 258378 338 : > CysLysLysIleGlyGluIleValTyrMetThrAsnTrpTyrGluLeuSerAsnL : 355 |||||||||:!!|||!!::!:||||||||||||:!!|||||| ! ||| !!:!!| ++CysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspL 258379 : .agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACA : 258520 356 : ysAspIlePheAsnLeuMetMetIleIleSerArgSerSerValSerValAsnMetSe : 374 || |||.!!:!!|||!!::!!:!!|||:!!|||||||||||| !|||.!.!!:!! ysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleTh 258521 : AAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCAC : 258577 375 : rAlaGlyLysLeuIleAsnMetSerValLeuThrPheGlyAsn >>>> Target I : 389 !|||||||||......:::||||||:!!! !||||||.!!:!! 69 rAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAsp++ 258578 : CGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATgt............. : 258624 390 : ntron 4 >>>> IleValLysSerValPheValTyrLeuAsnMetLeuArgGlnMe : 403 bp :!!:!!|||!!! !|||!.!|||||||||:!:|||||||||:! ++ValIleLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnVa 258625 : ............agGTAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGT : 258733 404 : tThr : 404 ::!! lSer 258734 : ATCG : 258738 vulgar: AfOr46 0 404 . KQ414889.1 256601 258738 + 1003 M 183 549 G 0 6 M 82 246 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256602 258738 1003 + . gene_id 1 ; sequence AfOr46 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256602 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256602 257404 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256602 258738 1003 + . alignment_id 1 ; Query AfOr46 ; Align 256602 1 549 ; Align 257157 184 246 ; Align 257482 267 99 ; Align 258265 300 111 ; Align 258466 337 156 ; Align 258691 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 847 Query range: 5 -> 298 Target range: 274347 -> 275306 6 : ValGluIleGluLysLysPheGlySerLeuAsnGluTyrSerIleGlnPheAsnArgT : 25 :!!.!.:!! !!!.|||! !||||||!:!!!:||||||:!:|||!!.||||||| IleAsnValThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgT 274348 : ATAAACGTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGAT : 274405 26 : rpIleLeuLysProIleGlyAlaTrpProThrSerLeuCysThrThrArgAsnGluLy : 44 ||.!!|||||||||||||||||||||||| !:!!! ! !||||||!:! !|||:: rpPheLeuLysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGluAr 274406 : GGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACG : 274462 45 : sIleIleSerLysIleLeuIleIleLeuCysTrpSerPheSerLeuPheThrLeuIle : 63 !|||:!!||| ! :::||||||...||||||:::!!!|||! !|||! !|||:!!||| gIleLeuSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIle 274463 : AATCCTTTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATC : 274519 64 : ProGlyLeuLeuHisPheLeuLeuGluLysGluAspIleTyrLeuLysLeuLysThrV : 83 |||.!!:!!!!!|||.!!:!!|||! ! ! |||..!:!!:!!|||||||||||| !: ProSerIlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuL 274520 : CCAAGCATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGC : 274579 84 : alGlyProLeuSerHisTyrCysValGlyGlyPheAsnTyrAlaIleLeuLeuLeuAr : 102 !!|||||||||.!!|||!::! !:!!||||||.!!||||||.!!! ||||||||||| euGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuAr 274580 : TCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACG : 274636 103 : gGluAsnAspIleLeuHisCysIleGluHisIleArgValAspTrpSerIleIleThr : 121 |...!!.!!:|||! ! !|||:!:||||||!!:!:!..!||||||!!!|||:!:||| gSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThr 274637 : CAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACC : 274693 122 : LysLysGlnAspGlnGlnValMetLeuLysTyrAlaLysIleGlyArgTyrIleAlaA : 141 !:! !:!!||||||||||||||||||||| !!||||||||||||||||||:!!||| ArgProGluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaI 274694 : AGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGA : 274753 142 : laPheCysThrAlaPheLeuGlnGlyGlyValLeuCysThrCysLeuAlaLeuGlyAl : 160 !||||||.!!||||||:!!||| !!|||||||||||| !|||:!! ! !!.! lePheCysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPh 274754 : TCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTT : 274810 161 : aPheLysThrThrIleLysAsnGlyAsnGluThrIleGluIleTyrSerLeuLeuCys : 179 ! !! ! !|||:!!:!! ||||||||||||! ! :!::!!! !|||! !||| eThrMetGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCys 274811 : CACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGT : 274867 180 : ProAlaTyrLys<-><->PheProValGlnThrAsnProThrHisAspIleIleLeuG : 197 !||||||||| !! !!|||.!.|||!:!||||||:!!!!:|||:!!|||! LysAlaTyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValLeuA 274868 : AAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTG : 274927 198 : lyThrGlnLeuLeuSerAlaPheIleAsnSerSerSerAlaAlaGlyAlaPheSerLe : 216 .!:!!|||!!!:!!|||!.!|||||| !:!|||||||||!.!|||||||||||||| laSerGlnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLe 274928 : CCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCT : 274984 217 : uAlaAlaValPheAlaSerHisAlaLeuGlyGlnLeuAsnIleMetValAlaTrpIle : 235 ||||||||||||||||:!!||||||! !|||||||||!:!:!::!!:!! !|||||| uAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIle 274985 : TGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATC : 275041 236 : AsnGluPheValAsnArgProMetGluSerAsnAsnAspAlaTyrValAsnLysIleS : 255 !.!||||||||||||!.! !!! !!!:...|||...:::...||| ::!:!!|||. ThrGluPheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleG 275042 : ACCGAGTTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCG : 275101 256 : erIleIleValGluHisHisLeuArgValLeu{Se} >>>> Target Intron 1 : 266 !!:!::!!||||||||||||||||||||||||{||} 74 bp lyValValValGluHisHisLeuArgValLeu{Se}++ 275102 : GCGTGGTTGTCGAACATCATCTGAGGGTACTC{AG}gt.................... : 275138 267 : >>>> {r}PheIleThrHisIleGluHisLeuMetAsnProIleCysPheMetGlu : 282 {|}||||||.!!!.!|||||| !!:!!||||||! !||||||||||||||| ++{r}PheIleAlaArgIleGluAspValMetAsnArgIleCysPheMetGlu 275139 : .....ag{T}TTCATAGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAA : 275256 283 : MetPheLysCysMetValGlyMetCysMetProSerTyrTyrIleLeu : 298 :!!|||||||||! :!!! !|||||||||! !.!!|||||||||||| LeuPheLysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleLeu 275257 : TTGTTCAAGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTCTC : 275306 vulgar: AfOr46 5 298 . KQ414889.1 274347 275306 + 847 M 178 534 G 0 6 M 82 246 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274348 275306 847 + . gene_id 2 ; sequence AfOr46 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274348 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274348 275135 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274348 275306 847 + . alignment_id 2 ; Query AfOr46 ; Align 274348 6 534 ; Align 274888 184 246 ; Align 275211 267 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 810 Query range: 0 -> 298 Target range: 266586 -> 267555 1 : MetSerAspAspLeuValGluIleGluLysLysPheGlySerLeuAsnGluTyrSerI : 20 |||:!!:!!!!:! !:!!! !|||||| !!!..!...!||||||!:!!!:||||||: MetAlaAsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerL 266587 : ATGGCTAACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCC : 266644 21 : leGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProThrSerLeuCysTh : 39 !:|||!!.|||||||||.!!|||||||||||||||||||||||| !!! !! ! !|| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuTh 266645 : TGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCAC : 266701 40 : rThrArgAsnGluLysIleIleSerLysIleLeuIleIleLeuCysTrpSerPheSer : 58 |:!!!:! !|||::!|||:!!||| ! !||||||:!!:!!|||!::!!!! !! ! rSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIle 266702 : ATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATA : 266758 59 : LeuPheThrLeuIleProGlyLeuLeuHisPheLeuLeuGluLysGluAspIleTyrL : 78 |||||||||:!!|||||| !!|||!!!|||.!!:!!|||||| ! |||..!||| ! LeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgT 266759 : CTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTA : 266818 79 : euLysLeuLysThrValGlyProLeuSerHisTyrCysValGlyGlyPheAsnTyrAl : 97 !|||:!!|||..! !!|||||||||||||||!::! !|||||||||.!!||||||.! hrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrTh 266819 : CGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACAC : 266875 98 : aIleLeuLeuLeuArgGluAsnAspIleLeuHisCysIleGluHisIleArgValAsp : 116 !! !||||||||||||...!!.!!:|||! ! !|||:!!||||||!!:!:!..!||| rThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAsp 266876 : CACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGAT : 266932 117 : TrpSerIleIleThrLysLysGlnAspGlnGlnValMetLeuLysTyrAlaLysIleG : 136 |||!!!|||:!:|||!:! !:!!|||:!!||||||||||||||| !!|||!:!|||| TrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleG 266933 : TGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCG : 266992 137 : lyArgTyrIleAlaAlaPheCysThrAlaPheLeuGlnGlyGlyValLeuCysThrCy : 155 |||||||||||||| !||||||.!!||||||:!!||| !!||||||||| !! !|| lyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCy 266993 : GTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTG : 267049 156 : sLeuAlaLeuGlyAlaPheLysThrThrIleLysAsnGlyAsnGluThrIleGluIle : 174 |:!! ! !!.! ! !! ! !|||:!::!! !||||||||||||! :!! sValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleVal 267050 : TGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTA : 267106 175 : TyrSerLeuLeuCysProAlaTyrLys<-><->PheProValGlnThrAsnProThrH : 192 :!! !|||! !||| !!!.!|||||| .!! !!|||.!.|||!:!||||||: HisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrA 267107 : CATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGA : 267166 193 : isAspIleIleLeuGlyThrGlnLeuLeuSerAlaPheIleAsnSerSerSerAlaAl : 211 !!!!:|||:!!|||! !:!!|||!!!:!!|||!.!|||||| !:!||||||!.!!. snGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValVa 267167 : ACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGT : 267223 212 : aGlyAlaPheSerLeuAlaAlaValPheAlaSerHisAlaLeuGlyGlnLeuAsnIle : 230 !||||||||||||||||||||||||||||||:!!||||||! !|||||||||!:!:!: lGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerVal 267224 : CGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTG : 267280 231 : MetValAlaTrpIleAsnGluPheValAsnArgProMetGluSerAsnAsnAspAlaT : 250 :!!:!! !||||||!!.||||||||||||||| !!! !!:||||||!!.:!!!.!! LeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValC 267281 : CTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTT : 267340 251 : yrValAsnLysIleSerIleIleValGluHisHisLeuArgValLeu{Se} >>>> : 266 ! !!:!!||||||.!!:!::!!||||||||||||||||||||||||{||} ysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 267341 : GCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG}gt..... : 267392 267 : Target Intron 1 >>>> {r}PheIleThrHisIleGluHisLeuMetAsnPro : 277 69 bp {|}||||||.!!!.!|||||| !:!!|||!:! ! ++{r}PheIleAlaArgIleGluSerValMetSerGlu 267393 : ....................ag{C}TTCATAGCACGTATCGAAAGTGTAATGAGCGAA : 267490 278 : IleCysPheMetGluMetPheLysCysMetValGlyMetCysMetProSerTyrTyrI : 297 |||||||||||||||:!!|||||||||! :!!! !!!:|||:!!! !|||||||||| IleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSerTyrTyrI 267491 : ATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCTATTATA : 267550 298 : leLeu : 298 ||||| leLeu 267551 : TCCTT : 267555 vulgar: AfOr46 0 298 . KQ414889.1 266586 267555 + 810 M 183 549 G 0 6 M 82 246 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266587 267555 810 + . gene_id 3 ; sequence AfOr46 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266587 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266587 267389 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267555 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266587 267555 810 + . alignment_id 3 ; Query AfOr46 ; Align 266587 1 549 ; Align 267142 184 246 ; Align 267460 267 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 792 Query range: 0 -> 340 Target range: 259721 -> 261856 1 : MetSerAspAspLeuValGluIleGluLysLysPheGlySerLeuAsnGluTyrSerI : 20 |||!!!:!! ! ! !||| :!!|||! !!..||| !|||! !!:!!!:||||||: MetThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerL 259722 : ATGACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCC : 259779 21 : leGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProThrSerLeuCysTh : 39 !!|||||||||||||||.!!|||||||||||||||||||||||| !!|||! !! !|| euGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 259780 : TCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCAC : 259836 40 : rThrArgAsnGluLysIleIleSerLysIleLeuIleIleLeuCysTrpSerPheSer : 58 ||||||| !||||||||||||||| |||||||||.!!:!!|||!::||| !! ! rThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIle 259837 : GACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATA : 259893 59 : LeuPheThrLeuIleProGlyLeuLeuHisPheLeuLeuGluLysGluAspIleTyrL : 78 ||| !!|||||||||||| !!:!!||||||.!.|||||||||||||||..!:!:|||: LeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrM 259894 : CTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACA : 259953 79 : euLysLeuLysThrValGlyProLeuSerHisTyrCysValGlyGlyPheAsnTyrAl : 97 !!||| !|||..!:!!|||||||||!!!|||!::! !|||||| !!.!!||||||.! etLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrTh 259954 : TGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACAC : 260010 98 : aIleLeuLeuLeuArgGluAsnAspIleLeuHisCysIleGluHisIleArgValAsp : 116 !! ||||||||||||! !..||||||||| !|||:!:||||||:!:..! !||| rThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAsp 260011 : AACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGAT : 260067 117 : TrpSerIleIleThrLysLysGlnAspGlnGlnValMetLeuLysTyrAlaLysIleG : 136 |||!!!|||||||||!:!:!!:!!||||||.!.|||||||||!:!|||||||||.!!| TrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheG 260068 : TGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCG : 260127 137 : lyArgTyrIleAlaAlaPheCysThrAlaPheLeuGlnGlyGlyValLeuCysThrCy : 155 ||||||||:!!||||||! !|||.!!||||||:!!|||||||||||||||||| !|| lyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCy 260128 : GCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTG : 260184 156 : sLeuAlaLeuGlyAlaPheLysThrThrIleLysAsnGlyAsnGluThrIleGluIle : 174 ||||!.! !! ! ! !! ! !..!|||:!! ||||||||||||! :!! sLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal 260185 : TTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTT : 260241 175 : TyrSerLeuLeuCysProAlaTyrLysPheProValGlnThrAsn<-><->ProThrH : 192 :!! !|||! !||| !!!.!|||||| ! !:!!.!...!||| |||! !: HisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetA 260242 : CATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGA : 260301 193 : isAspIleIleLeuGlyThrGlnLeuLeuSerAlaPheIleAsnSerSerSerAlaAl : 211 !!!!:|||:!!|||! !..!|||!!!:!!|||!.!|||||| !:!||||||.!!!. snGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrVa 260302 : ACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGT : 260358 212 : aGlyAlaPheSerLeuAlaAlaValPheAlaSerHisAlaLeuGlyGlnLeuAsnIle : 230 !||| !||||||||||||||||||.!..!!:!!||||||! !||||||||||||:!: lGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnVal 260359 : TGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTG : 260415 231 : MetValAlaTrpIleAsnGluPheValAsnArgProMetGluSerAsnAsnAspAlaT : 250 :!::!!! !||||||!..|||||||||:!!..! !!! !.!.!!!!!.!!. ! ||| LeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaP 260416 : CTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTC : 260475 251 : yrValAsnLysIleSerIleIleValGluHisHisLeuArgValLeu{Se} >>>> : 266 ! !!!!.:!!|||.!!:!:|||||||||||||||||||||!.!|||{!!} roPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeu{Th}++ 260476 : CTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC{AC}gt..... : 260527 267 : Target Intron 1 >>>> {r}PheIleThrHisIleGlu<->HisLeuMetAsn : 276 1103 bp {!}!!. ! ! !:!!||| !.! !...!.. ++{r}LeuTyrArgAlaLeuGlu***ArgArgGlnArg 260528 : ....................ag{T}TTGTATCGGGCCTTAGAATAACGCAGGCAAAGG : 261659 277 : ProIleCysPheMetGluMetPheLysCysMetValGlyMetCysMetProSerTyrT : 296 |||! !! !!:! ! ! !:! ! |||! !! !!!: !.!. |||: ProThrPheTyrAspTyrSerTyrAspCysAsnCysValIleIlePhePhe***TyrP 261660 : CCAACATTTTACGATTACAGTTACGATTGCAATTGTGTAATAATCTTTTTctgatatt : 261719 297 : yr<->IleLeuAlaGluTrpSerGluHisAsnIleGlnAsnLeuAlaValTyrValMe : 314 :: :::||| ||||||:!!|||!!.:!!||||||||||||:!!..!||| !!|| hePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheMe 261720 : tctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCAT : 261776 315 : tIleIleIleSerMetThrCysAsnIlePheLeuIleAsnTyrIleGlyGluIleLeu : 333 |!!::!:|||:!!!!: !! !|||:!!|||:!!||| !|||||||||||||||||| tMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLeu 261777 : GATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACTA : 261833 334 : ThrGluGlnCysLysLysIle : 340 ||||||||| :!! ! :!: ThrGluGlnValGlnHisLeu 261834 : ACGGAACAGGTACAACATTTG : 261856 vulgar: AfOr46 0 340 . KQ414889.1 259721 261856 + 792 M 189 567 G 0 6 M 76 228 S 0 2 5 0 2 I 0 1099 3 0 2 S 1 1 M 6 18 G 0 3 M 24 72 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259722 261856 792 + . gene_id 4 ; sequence AfOr46 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259722 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259722 260524 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 261627 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261626 261627 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261628 261856 . + . KQ414889.1 exonerate:protein2genome:local exon 261628 261856 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259722 261856 792 + . alignment_id 4 ; Query AfOr46 ; Align 259722 1 567 ; Align 260295 190 228 ; Align 261629 267 18 ; Align 261650 273 72 ; Align 261725 297 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 693 Query range: 9 -> 265 Target range: 262825 -> 263599 10 : LysLysPheGlySerLeuAsnGluTyrSerIleGlnPheAsnArgTrpIleLeuLysP : 29 :!!!..||||||||||||!:!!!:||||||:!:|||.!.|||||||||:!:||||||| GluSerPheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysP 262826 : GAAAGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAAC : 262883 30 : roIleGlyAlaTrpProThrSerLeuCysThrThrArgAsnGluLysIleIleSerLy : 48 ||||||||||||||||| !||| !! ! !:!!|||! |||::!||||||!!! roIleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPh 262884 : CGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTT : 262940 49 : sIleLeuIleIleLeuCysTrpSerPheSerLeuPheThrLeuIleProGlyLeuLeu : 67 :!!||||||:!!:!!|||!::!!!.!!! !|||! !|||:!!||||||..!:!!||| eLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeu 262941 : TCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTT : 262997 68 : HisPheLeuLeuGluLysGluAspIleTyrLeuLysLeuLysThrValGlyProLeuS : 87 |||.!!:!!|||||| |||:!!.!!:!!:!!||||||:!!..!:!!|||||||||. HisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuG 262998 : CATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCG : 263057 88 : erHisTyrCysValGlyGlyPheAsnTyrAlaIleLeuLeuLeuArgGluAsnAspIl : 106 !!!!.!::! !|||||| !.!!||||||.!! |||||||||!.!...!!.||||| lyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIl 263058 : GTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATAT : 263114 107 : eLeuHisCysIleGluHisIleArgValAspTrpSerIleIleThrLysLysGlnAsp : 125 |! ! !|||:!::!!|||:!:!:!! !||||||!!!|||:!:|||!:! !:!!||| eGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAsp 263115 : ACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGAT : 263171 126 : GlnGlnValMetLeuLysTyrAlaLysIleGlyArgTyrIleAlaAlaPheCysThrA : 145 |||!:::!!||||||||| !!|||||| !|||||||||:!:||||||! !|||.!! GlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaI 263172 : CAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGA : 263231 146 : laPheLeuGlnGlyGlyValLeuCysThrCysLeuAlaLeuGlyAlaPheLysThrTh : 164 !|||:!!||| !.!!:!!:!!|||! !||||||!.! !!.! ! !! ! !.. lePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnVa 263232 : TCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGT : 263288 165 : rIleLysAsnGlyAsnGluThrIleGluIleTyrSerLeuLeuCysProAlaTyrLys : 183 !|||:!!:!!||||||||||||! ! :!! !! !|||! !||||||!.!|||||| lIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLys 263289 : GATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAA : 263345 184 : <-><->PheProValGlnThrAsnProThrHisAspIleIleLeuGlyThrGlnLeuL : 201 .!!||||||.!.||||||||||||:!!!!:|||.!!|||!.!||||||!!!| GluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheL 263346 : GAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTC : 263405 202 : euSerAlaPheIleAsnSerSerSerAlaAlaGlyAlaPheSerLeuAlaAlaValPh : 220 |||||!.!|||||| !!!!:!!!!!.!!!.!|||||||||.!!:!!.!!|||||||| euSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPh 263406 : TGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTT : 263462 221 : eAlaSerHisAlaLeuGlyGlnLeuAsnIleMetValAlaTrpIleAsnGluPheVal : 239 ||||.!!||||||! !||||||||||||:!::!!:!!:!!||||||!..||||||||| eAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheVal 263463 : CGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTG : 263519 240 : AsnArgProMetGluSerAsnAsnAspAlaTyrValAsnLysIleSerIleIleValG : 259 |||!:! !!! !!!:..!|||!!.:!! !||| !!!.!:!!|||.!!:!:||||||| AsnGlnSerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValG 263520 : AACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTG : 263579 260 : luHisHisLeuArgValLeu : 265 |||||||||||||||||||| luHisHisLeuArgValLeu 263580 : AACATCATCTGAGAGTTCTG : 263599 vulgar: AfOr46 9 265 . KQ414889.1 262825 263599 + 693 M 174 522 G 0 6 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262826 263599 693 + . gene_id 5 ; sequence AfOr46 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262826 263599 . + . KQ414889.1 exonerate:protein2genome:local exon 262826 263599 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262826 263599 693 + . alignment_id 5 ; Query AfOr46 ; Align 262826 10 522 ; Align 263354 184 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 495 Query range: 8 -> 404 Target range: 226903 -> 230518 9 : GluLysLysPheGlySerLeuAsnGluTyrSerIleGlnPheAsnArgTrpIleLeuL : 28 |||!!. ! !:! !..!! ! .!. |||||||||!!.|||||||||:!:|||| GluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuL 226904 : GAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGA : 226961 29 : ysProIleGlyAlaTrpProThrSerLeuCysThrThrArgAsnGluLysIleIleSe : 47 |||||:!!||| !||||||:!!|||! ! !:!:!!|||! ! !!:! !.!!|| ysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSe 226962 : AACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTC : 227018 48 : rLysIleLeuIleIleLeuCysTrpSerPheSerLeuPheThrLeuIleProGlyLeu : 66 | !:!::!! !.!!||||||!:::!!.!.! ! !||| !|||:!! !!.!! ! rTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGly 227019 : CTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGC : 227075 67 : LeuHisPheLeuLeuGluLysGluAspIleTyrLeuLysLeuLysThrValGlyProL : 86 |||:!! ! :!!|||||| !:!!! ! !||| !! !||||||! !:!!||||||: LeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProM 227076 : TTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGA : 227135 87 : euSerHisTyrCysValGlyGlyPheAsnTyrAlaIleLeuLeuLeuArgGluAsnAs : 105 !!||| !!:!...:!!..! !.!!!!.|||:!!!!:||| !!!!!.!|||:!!|| etSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAs 227136 : TGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGA : 227192 106 : pIleLeuHisCysIleGluHisIleArgValAspTrpSerIleIleThrLysLysGln : 124 |||||||.!.|||:!!|||!..|||!:! !||||||!.!! !|||! ! ! !:!! pIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGlu 227193 : CATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAG : 227249 125 : AspGlnGlnValMetLeuLysTyrAlaLysIleGlyArgTyrIleAlaAlaPheCysT : 144 |||::!.!.||||||:!!! !|||||| ! !|||||| ! :!: !.!!.!!|||| AspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysT 227250 : GACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCA : 227309 145 : hrAlaPheLeuGlnGlyGlyValLeu<-><->CysThrCysLeuAlaLeuGlyAlaPh : 161 || !|||:!! ...... ::: ! ! !:!! !!:!!..!||| hrPhePheValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGl 227310 : CGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGG : 227366 162 : eLysThrThrIleLysAsnGlyAsnGluThrIleGluIleTyrSerLeuLeuCysPro : 180 !....!.!!! :!!:!!||||||.!.!:! ! !!!!!! !! !||| ySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPhePro 227367 : AAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCA : 227423 181 : AlaTyrLysPheProValGlnThrAsnProThrHisAspIleIleLeuGlyThrGlnL : 200 ! !! ! !|||!:: !!:!||| !:!!!!:|||.!!!!!..!..!|||! LysIleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnP 227424 : AAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAAT : 227483 201 : euLeuSerAlaPheIleAsnSerSerSerAlaAlaGlyAlaPheSerLeuAlaAlaVa : 219 !!:!!!!!!.!.!!:!: !.!! !.!!:!!!.!|||! !|||:!!||||||:! heValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLe 227484 : TTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCT : 227540 220 : lPheAlaSerHisAlaLeuGlyGlnLeuAsnIleMetValAlaTrpIleAsnGluPhe : 238 !.!!||| !||||||! !||||||:!!.!.:!::!!|||:!!|||:!:....!.!!. uLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeu 227541 : GCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTG : 227597 239 : ValAsnArgProMetGluSerAsnAsnAspAlaTyrValAsnLysIleSerIleIleV : 258 :!!:!! !! ! !!!:! !!:!!!. .!! ! !:!!!:!|||:!!! !|||| IleAspGlyArgAlaAspMetSerLys---ThrLeuAspAspArgIleAlaSerIleV 227598 : ATCGACGGCAGAGCGGATATGAGCAAA---ACACTGGATGATAGAATCGCTAGCATCG : 227654 259 : alGluHisHisLeuArgValLeuSerPheIleThrHisIleGluHisLeuMetAsnPr : 277 || ||||||:!!|||:!!|||!.!! !:!!||| !||| :!!|||:!! !!! alThrHisHisValArgIleLeuLysCysValThrCysIle---TyrLeuLeuTyrAr 227655 : TCACTCACCACGTTCGAATATTGAAGTGTGTAACGTGTATC---TATTTGTTGTATCG : 227708 278 : oIleCysPheMetGluMetPheLysCysMetValGlyMetCysMetProSerTyrTyr : 296 ! !! |||:!: |||... ! !!:!:..! !:!!! ||| gAsp***PheLeuLeuAsnPheAsnGlnTyrSerArgLeuAlaTyrAsnAlaLeuTyr 227709 : TGATTAATTTCTcttgaattttaatcaatACAGCAGACTAGCTTATAACGCGTTGTAT : 227765 297 : IleLeuAla >>>> Target Intron 1 >>>> GluTrpSerGluHisAsnIl : 306 !!!!||| 471 bp ||||||!:! ! ! .!.:! GluPheAla-+ ++GluTrpAsnProLysGluLe 227766 : GAATTCGCGtt.........................agGAATGGAATCCGAAAGAGTT : 228266 307 : eGlnAsnLeuAlaValTyrValMetIleIleIleSerMetThrCysAsnIlePheLeu : 325 ! ! ! !!.!..!||| ! !:!!:!!:!!|||.!.||| |||||||||::: uThrPheAlaValThrTyrSerAlaLeuLeuLeuSerPheThrPheAsnIlePheIle 228267 : AACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCTTTAccttcaatattttcata : 228323 326 : IleAsnTyrIleGlyGluIleLeuThrGluGln >>>> Target Intron 2 >> : 337 ... |||||||||||||||:!!.!!|||!!. 1889 bp PheCysTyrIleGlyGluIleValAlaGluHis++ 228324 : ttttgttaTATAGGAGAAATTGTTGCCGAACACgt....................... : 228361 338 : >> CysLysLysIleGlyGluIleValTyrMetThrAsnTrpTyrGluLeuSerAsn : 354 |||!:!|||:!!||||||! !||||||! !.!.||||||..!|||!!!... ++CysArgLysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGly 228362 : ..agTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGA : 230299 355 : LysAspIlePheAsnLeuMetMetIleIleSerArgSerSerValSerValAsnMetS : 374 !!. ! ! .!! !! !!!::!!||||||:!!! !|||!:! !|||..!!!..!.! AsnLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheT 230300 : AACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTA : 230359 375 : erAlaGlyLysLeuIleAsnMetSerValLeuThrPheGlyAsn >>>> Target : 389 !!||||||!!.:!!:!!.!.:!:|||||| !||||||.!!:!! 67 hrAlaGlyAsnMetValGluLeuSerValAsnThrPheSerAsp++ 230360 : CAGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGACgt............ : 230406 390 : Intron 3 >>>> IleValLysSerValPheValTyrLeuAsnMetLeuArgGlnM : 403 bp :!!||||||!!! !.!.! !!:!||||||||||||||| !: ++ValValLysThrSerMetGlyPheLeuAsnMetLeuArgThrL 230407 : .............agGTCGTTAAAACGTCCATGGGTTTCTTAAACATGCTACGAACAC : 230513 404 : etThr : 404 !!||| euThr 230514 : TGACG : 230518 vulgar: AfOr46 8 404 . KQ414889.1 226903 230518 + 495 M 144 432 G 0 6 M 95 285 G 1 0 M 23 69 G 1 0 M 27 81 5 0 2 I 0 467 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226904 230518 495 + . gene_id 6 ; sequence AfOr46 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226904 227776 . + . KQ414889.1 exonerate:protein2genome:local exon 226904 227776 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 227777 227778 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 227777 228247 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230403 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230403 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 230404 230405 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 230404 230470 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230469 230470 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230471 230518 . + . KQ414889.1 exonerate:protein2genome:local exon 230471 230518 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226904 230518 495 + . alignment_id 6 ; Query AfOr46 ; Align 226904 9 432 ; Align 227342 153 285 ; Align 227627 249 69 ; Align 227696 273 81 ; Align 228248 300 111 ; Align 230248 337 156 ; Align 230471 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 482 Query range: 1 -> 265 Target range: 236804 -> 237596 2 : SerAspAspLeuValGluIleGluLysLysPheGlySerLeuAsnGluTyrSerIleG : 21 !:!||| ! !|||! ! !|||! !!..!. !:!! !!:!!!:||||||:!!| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuG 236805 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCC : 236862 22 : lnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProThrSerLeuCysThrTh : 40 ||!::||||||||| :!!||| !||||||.!!|||||| ! ! !:!!:! lnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGln------PheSerSe 236863 : AGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAG------TTCTCGTC : 236913 41 : rArgAsnGluLysIleIleSerLysIleLeuIleIleLeuCysTrpSerPheSerLeu : 59 !!.! !|||!:!! !||||||::!||||||! !:!::!!|||!::!!! ! !||| rAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeu 236914 : GAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTA : 236970 60 : PheThrLeuIleProGlyLeuLeuHisPheLeuLeuGluLysGluAspIleTyrLeuL : 79 |||:!!:!!|||||| !!! !||||||.!.:!!|||||||||! ! !.!!||| !| PheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrL 236971 : TTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGA : 237030 80 : ysLeuLysThrValGlyProLeuSerHisTyrCysValGlyGlyPheAsnTyrAlaIl : 98 ||:!!|||! !:!!||| !!|||||||||!:: !! !! !.!!!:!|||.!!!! ysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMe 237031 : AAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCAT : 237087 99 : eLeuLeuLeuArgGluAsnAspIleLeuHisCysIleGluHisIleArgValAspTrp : 117 :||||||||||||...!!. !|||! !|||! !.!!.!.|||!!:..!..!|||||| tLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrp 237088 : GCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGG : 237144 118 : SerIleIleThrLysLysGlnAspGlnGlnValMetLeuLysTyrAlaLysIleGlyA : 137 !!!! ! |||:::|||::: ::::::|||||||||||||||||||||.!!.!!| ArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerA 237145 : AGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTC : 237204 138 : rgTyrIleAlaAlaPheCysThrAlaPheLeuGlnGlyGlyValLeuCysThrCysLe : 156 ||||| ||| !! !|||||| !|||:!!!!.||||||:!!||| ! !|||:! rgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysVa 237205 : GATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGT : 237261 157 : uAlaLeuGlyAlaPheLysThrThrIleLysAsnGlyAsnGluThrIleGluIleTyr : 175 ! ! !!.!:!! !! !! !..!:!! ! !||||||:!!|||! :!: ! lMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLeuArg 237262 : TATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGC : 237318 176 : SerLeuLeuCysProAlaTyrLys<-><->PheProValGlnThrAsnProThrHisA : 193 !|||! !! ||| !|||||| .!!||||||.!.|||||| !!! !:!!| ValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnA 237319 : GTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACG : 237378 194 : spIleIleLeuGlyThrGlnLeuLeuSerAlaPheIleAsnSerSerSerAlaAlaGl : 212 |||||:!!:!! !:!!|||!!!||||||!.!|||||| !:!!:!|||||| !.! spIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSe 237379 : ACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAG : 237435 213 : yAlaPheSerLeuAlaAlaValPheAlaSerHisAlaLeuGlyGlnLeuAsnIleMet : 231 !!.!.!.||||||.!!::!!.!.!..!!|||||||||! !|||||||||!:!:!::!: rValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValVal 237436 : TGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTT : 237492 232 : ValAlaTrpIleAsnGluPheValAsnArgProMetGluSerAsnAsnAspAlaTyrV : 251 :!! !! !|||.!.!!:||||||!:!..! !!! ...!!!...!!.|||! !:!! MetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAspHisP 237493 : ATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATCATT : 237552 252 : alAsnLysIleSerIleIleValGluHisHisLeuArgValLeu : 265 !!:!!:!!||| !!! !|||||||||.!.||||||||||||||| heAspGluIleProThrIleValGluGluHisLeuArgValLeu 237553 : TCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTG : 237596 vulgar: AfOr46 1 265 . KQ414889.1 236804 237596 + 482 M 34 102 G 2 0 M 146 438 G 0 6 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236805 237596 482 + . gene_id 7 ; sequence AfOr46 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236805 237596 . + . KQ414889.1 exonerate:protein2genome:local exon 236805 237596 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236805 237596 482 + . alignment_id 7 ; Query AfOr46 ; Align 236805 2 102 ; Align 236907 38 438 ; Align 237351 184 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 449 Query range: 16 -> 269 Target range: 232456 -> 233218 17 : GluTyrSerIleGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProThrS : 36 ||||||||||||||| ! |||||||||.!!|||! !|||!!:|||||||||||| ! GluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgV 232457 : GAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTG : 232514 37 : erLeuCysThrThrArgAsnGluLysIleIleSerLysIleLeuIleIleLeuCysTr : 55 ! ! |||:!!||| !:!!:!!:!!:!!:!!|||:!:|||! !:!! !||| alThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHi 232515 : TTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCA : 232571 56 : pSerPheSerLeuPheThrLeuIleProGlyLeuLeuHisPheLeuLeuGluLysGlu : 74 |||.!.! !:!!! !:!!:!!:!!||| !!:!!||| !.!!|||!!!||| ! ! sSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThr 232572 : TTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACG : 232628 75 : AspIleTyrLeuLysLeuLysThrValGlyProLeuSerHisTyrCysValGlyGlyP : 94 ..!:!! ! !!:!:!!|||:!!:!!||||||:!!||||||!:! :!!|||! !! SerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluL 232629 : AGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAAT : 232688 95 : heAsnTyrAlaIleLeuLeuLeuArgGluAsnAspIleLeuHisCysIleGluHisIl : 113 !.||||||..! !|||||| !!:!! !||||||||||||:!!|||:!:|||!!.:! euAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnVa 232689 : TGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGT : 232745 114 : eArgValAspTrpSerIleIleThrLysLysGlnAspGlnGlnValMetLeuLysTyr : 132 :!:! !|||||| !!! !:!!! !||| !!!::.!.:!!||||||||| !! lLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsn 232746 : GAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAAC : 232802 133 : AlaLysIleGlyArgTyrIleAlaAlaPheCysThrAlaPheLeuGlnGlyGlyValL : 152 ||||||:!!||||||! ||||||..!.!!..!.!! !! !:!!!!. !|||||| AlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValG 232803 : GCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCG : 232862 153 : euCysThrCysLeuAlaLeuGlyAlaPheLysThrThrIleLysAsnGlyAsnGluTh : 171 !! ! ! :!!!.! !||| ! !! !!:!|||.!! ! |||||||||!: lySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSe 232863 : GCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAG : 232919 172 : rIleGluIleTyrSerLeuLeuCysProAlaTyrLysPheProValGlnThr<-><-> : 189 ! !..!!!:||| !!|||! !||| !! !|||! ! ! !:!!.!.||| rTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPhe 232920 : TTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTC : 232976 190 : AsnProThrHisAspIleIleLeuGlyThrGlnLeuLeuSerAlaPheIleAsnSerS : 208 !:!||||||:!!!!:|||!!:!!!! ! !|||! !||||||!.!|||||| !:!| SerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnS 232977 : AGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACT : 233036 209 : erSerAlaAlaGlyAlaPheSerLeuAlaAlaValPheAlaSerHisAlaLeuGlyGl : 227 || !.!!!.!||||||! !.!!|||!.!||||||.!.|||! !||||||! !||||| erValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGl 233037 : CCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACA : 233093 228 : nLeuAsnIleMetValAlaTrpIleAsnGluPheValAsnArgProMetGluSerAsn : 246 |||||||:!::!!:!!:!! :!::!!!!:!!.|||:!! ! ! !:!!..!.!. nLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGlyGlnGluGlu 233094 : GCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAGGAGGAG : 233150 247 : AsnAspAlaTyrValAsnLysIleSerIleIleValGluHisHisLeuArgValLeuS : 266 !..! !||| ! !..|||:!!.!!.!!|||||||||||||||||||||..!|||! ArgValAlaGln---ArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeuA 233151 : AGAGTCGCGCAG---AGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTAA : 233207 267 : erPheIleThr : 269 !!!:!:!::!! rgTyrLeuSer 233208 : GGTATTTGTCT : 233218 vulgar: AfOr46 16 269 . KQ414889.1 232456 233218 + 449 M 172 516 G 0 6 M 62 186 G 1 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232457 233218 449 + . gene_id 8 ; sequence AfOr46 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232457 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232457 233218 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 232457 233218 449 + . alignment_id 8 ; Query AfOr46 ; Align 232457 17 516 ; Align 232979 189 186 ; Align 233165 252 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 402 Query range: 17 -> 345 Target range: 278576 -> 280229 18 : TyrSerIleGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProThrSerL : 37 ||||||:!!|||.!.|||||||||.!!|||||||||||||||!.!|||||| !|||| TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 38 : euCysThrThrArgAsnGluLysIleIleSerLysIleLeuIleIleLeuCysTrpSe : 56 |||||..!|||! ! |||||||||! !||| !:!!||| :!!:!! !!!! ! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 57 : rPheSerLeuPheThrLeuIleProGlyLeuLeuHisPheLeuLeuGluLysGlu<-> : 75 !.!.! ! !||| !|||:!!||| !! !||| ! :!!|||!!:||| eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 76 : AspIleTyrLeuLysLeuLysThrValGlyProLeuSerHisTyrCysValGlyGlyP : 94 |||:!! !! !|||:!!|||! !:!!|||||||||||| !! ! :!!!.! !. AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 95 : heAsnTyrAlaIleLeuLeuLeuArgGluAsnAspIleLeuHisCysIleGluHisIl : 113 !!!!.||| !||||||:!!! !|||! ..! ! ||| ! ! |||:!:.!. !!|| leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 114 : eArgValAspTrpSerIle<-><-><->IleThrLysLysGlnAspGlnGlnValMet : 129 ||||..!|||||||||:!! ! :::::::::::::::::::::||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 130 : LeuLysTyrAlaLysIleGlyArgTyrIleAlaAlaPheCysThrAlaPheLeu<->G : 148 ! ! !|||!:!|||||||||! !:!:||| !||| !!.!!!.!|||:!! . ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 149 : lnGlyGlyValLeuCysThrCysLeuAlaLeuGlyAlaPheLysThrThrIleLysAs : 167 ..|||||||||!!!! !|||..!:!! !! ! ! ! ! !||| ! ! erGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIl 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCAT : 279039 168 : nGlyAsnGluThrIleGluIleTyrSerLeuLeuCysProAlaTyrLysPheProVal : 186 !! !|||||||||:!:..! ! ! :!!!!!! ! ! ! ! ! .!! ! ! eAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 279040 : CGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCG : 279096 187 : GlnThrAsnProThrHisAspIleIleLeuGlyThrGlnLeuLeuSerAlaPheIleA : 206 !::|||!:!|||:!! !!!:|||:!:! ! !! !|||! !|||:!!||||||:!! ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValL 279097 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTT : 279156 207 : snSerSerSerAlaAlaGlyAlaPheSerLeuAlaAlaValPheAlaSerHisAlaLe : 225 ! !||| !.!!!.!||||||! !|||||| !|||||||||!.!! !|||!.!! euTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCy 279157 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTG : 279213 226 : uGlyGlnLeuAsnIleMetValAlaTrpIleAsnGluPheValAsnArgProMet<-> : 244 !||||||!!!!..|||:!:|||.!! !:!::!!:!!.!!:!!:!! !! !! sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLysGly 279214 : TGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGG : 279270 245 : GluSerAsnAsnAspAlaTyrValAsnLysIleSerIleIleValGluHisHisLeuA : 263 ..!!.!!:! ..!.!!:!!! !.!.::!:!:.!! !|||:!!||||||||||||! ArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuL 279271 : AGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGA : 279330 264 : rgValLeu{Se} >>>> Target Intron 1 >>>> {r}PheIleThrHisIl : 271 :!:!!|||{.!} 657 bp {!}!!..!!|||||| ysIleLeu{Gl}++ +-{y}LeuPheThrHisGl 279331 : AGATACTG{GG}gt.........................at{A}TTATTTACTCACGG : 280011 272 : eGluHisLeuMetAsnProIleCysPheMetGluMetPheLysCysMetValGlyMet : 290 !.!.... :!! !:!!|||!:!.!..!.!!: ! ! !...! :!!!.!.!. yAsnArg------AspAspLeuCysTyrPheHisIleValMetAlaLysIleAlaPhe 280012 : TAACAGA------GACGACTTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTC : 280062 291 : CysMetProSerTyrTyrIleLeuAlaGluTrpSerGluHisAsnIleGlnAsnLeuA : 310 !||| !|||! ! :!!!!! !||||||..!:!!:!!:!! ! !... ! ValMetTyrSerLeuSerValPhe***GluTrpGluGlnAsnAspAlaIleGlyThrP 280063 : GTCATGTACTCGTTGTCAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGT : 280122 311 : laValTyrValMetIleIleIleSerMetThrCysAsnIlePheLeuIleAsnTyrIl : 329 !..!|||:!!|||.!!:!!||||||:!:|||! !|||:!!|||:!!:!! !||||| heThrTyrLeuMetPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIl 280123 : TCACGTATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACAT : 280179 330 : eGlyGluIleLeuThrGluGlnCysLysLysIleGlyGluIleValTyr : 345 |||||||||||||:!!|||||| |||...... :!!||| eGlyGluIleLeuSerGluGlnValPhePheIleSerSerThrIleTyr 280180 : CGGTGAAATTCTCTCCGAACaggtatttttcatttcttcaacGATCTAT : 280229 vulgar: AfOr46 17 345 . KQ414889.1 278576 280229 + 402 M 57 171 G 0 3 M 45 135 G 0 9 M 28 84 G 0 3 M 96 288 G 0 3 M 22 66 S 0 2 5 0 2 I 0 653 3 0 2 S 1 1 M 7 21 G 2 0 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 280229 402 + . gene_id 9 ; sequence AfOr46 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278577 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279340 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279997 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279996 279997 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 279998 280229 . + . KQ414889.1 exonerate:protein2genome:local exon 279998 280229 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 278577 280229 402 + . alignment_id 9 ; Query AfOr46 ; Align 278577 18 171 ; Align 278751 75 135 ; Align 278895 120 84 ; Align 278982 148 288 ; Align 279273 244 66 ; Align 279999 267 21 ; Align 280020 276 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 398 Query range: 17 -> 345 Target range: 284523 -> 287016 18 : TyrSerIleGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProThrSerL : 37 ||||||:!!|||.!.|||||||||.!!|||||||||||||||!.!|||||| !|||| TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 38 : euCysThrThrArgAsnGluLysIleIleSerLysIleLeuIleIleLeuCysTrpSe : 56 |||||..!|||! ! |||||||||! !||| !:!!||| :!!:!! !!!! ! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 57 : rPheSerLeuPheThrLeuIleProGlyLeuLeuHisPheLeuLeuGluLysGlu<-> : 75 !.!.! ! !||| !|||:!!||| !! !||| ! :!!|||!!:||| eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 76 : AspIleTyrLeuLysLeuLysThrValGlyProLeuSerHisTyrCysValGlyGlyP : 94 |||:!! !! !|||:!!|||! !:!!|||||||||||| !! ! :!!!.!!.!. AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 95 : heAsnTyrAlaIleLeuLeuLeuArgGluAsnAspIleLeuHisCysIleGluHisIl : 113 !!!!.||| !||||||:!!! !|||! ..! ! ||| !!!.|||:!::!! !!|| leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 114 : eArgValAspTrpSerIleIle<-><-><->ThrLysLysGlnAspGlnGlnValMet : 129 ||||!.!|||||||||:!!! !:::::::::::::::::::::::||| eArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMet 284813 : TCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTG : 284869 130 : LeuLysTyrAlaLysIleGlyArgTyrIleAlaAlaPheCysThrAlaPheLeu<->G : 148 ! ! !|||!:!|||||||||! !:!:||| !||||||.!!!.!|||:!! . ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrS 284870 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATT : 284929 149 : lnGlyGlyValLeuCysThrCysLeuAlaLeuGlyAlaPheLysThrThrIleLysAs : 167 ..|||||| !!!!!! !||| :!! !! ! !..! ! !||| ! ! erGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIl 284930 : CCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCAT : 284986 168 : nGlyAsnGluThrIleGluIleTyrSerLeuLeuCysProAlaTyrLysPheProVal : 186 !! !|||||||||:!:..! ! ! :!!!!!! ! ! ! ! ! .!! ! ! eAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 284987 : CGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCG : 285043 187 : GlnThrAsnProThrHisAspIleIleLeuGlyThrGlnLeuLeuSerAlaPheIleA : 206 !::|||!:!|||:!! !!!:|||:!:! ! !! !|||! !|||:!!||||||:!!! ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValI 285044 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTA : 285103 207 : snSerSerSerAlaAlaGlyAlaPheSerLeuAlaAlaValPheAlaSerHisAlaLe : 225 ! !||| !.!!!.!||||||! !||||||||||||||||||!.!! !|||!.!! leTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCy 285104 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTG : 285160 226 : uGlyGlnLeuAsnIleMetValAlaTrpIleAsnGluPheValAsnArgProMet<-> : 244 !||||||!!!!..|||:!:|||.!! !:!::!!:!!.!!|||:!! !! !! sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLysGly 285161 : TGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGG : 285217 245 : GluSerAsnAsnAspAlaTyrValAsnLysIleSerIleIleValGluHisHisLeuA : 263 ..!!.!... ..!.!!:!!! !.!.::!:!:.!! !|||:!!||||||||||||! ArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuL 285218 : AGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGA : 285277 264 : rgValLeu{Se} >>>> Target Intron 1 >>>> {r}PheIleThrHisIl : 271 :!:!!|||{.!} 1494 bp {!} ||| ! !! ysIleLeu{Gl}++ -+{y}---IleLeuPheTh 285278 : AGATACTG{GG}gt.........................gg{G}---ATATTATTTAC : 286792 272 : eGluHisLeuMetAsnProIleCysPheMetGluMetPheLysCysMetValGlyMet : 290 !!!: ! !! :!! !:!:|||!:! .!.! ! ! !...!!::!!!.!.!. rAspGlyAsnArgAspAspLeuCysTyrTyrHisThrValMetAlaIleIleAlaPhe 286793 : TGACGGTAACAGAGACGACTTGTGTTATTACCATACTGTAATGGCAATAATTGCATTC : 286849 291 : CysMetProSerTyrTyrIleLeuAlaGluTrpSerGluHisAsnIleGlnAsnLeuA : 310 !||| !|||! ! :!!!!! !||||||..!:!! !.!.! ! !... ! ValMetTyrSerLeuSerValPhe***GluTrpGluGlnSerGluThrIleGlyThrI 286850 : GTCATGTACTCGTTGTCAGTTTTCTAGGAATGGGAGCAAAGTGAAACTATAGGAACGA : 286909 311 : laValTyrValMetIleIleIleSerMetThrCysAsnIlePheLeuIleAsnTyrIl : 329 !..!||| !! !:!::!::!!|||.!.|||! !|||:!!|||:!!:!! !||||| leThrTyrCysThrLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIl 286910 : TCACGTATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACAT : 286966 330 : eGlyGluIleLeuThrGluGlnCysLysLysIleGlyGluIleValTyr : 345 |||||||||||||:!!|||||| ||| ...! :!!||| eGlyGluIleLeuSerGluGlnValPhePheIleThrSerThrIleTyr 286967 : CGGTGAAATTCTCTCCGAACaggtatttttcattacttcaACGATCTAT : 287016 vulgar: AfOr46 17 345 . KQ414889.1 284523 287016 + 398 M 57 171 G 0 3 M 46 138 G 0 9 M 27 81 G 0 3 M 96 288 G 0 3 M 22 66 S 0 2 5 0 2 I 0 1490 3 0 2 S 1 1 G 1 0 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 287016 398 + . gene_id 10 ; sequence AfOr46 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284524 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 285287 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286780 286781 . + . intron_id 0 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 286782 287016 . + . KQ414889.1 exonerate:protein2genome:local exon 286782 287016 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284524 287016 398 + . alignment_id 10 ; Query AfOr46 ; Align 284524 18 171 ; Align 284698 75 138 ; Align 284845 121 81 ; Align 284929 148 288 ; Align 285220 244 66 ; Align 286783 268 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 391 Query range: 5 -> 268 Target range: 221342 -> 222134 6 : ValGluIleGluLysLysPheGlySerLeuAsnGluTyrSerIleGlnPheAsnArgT : 25 ..!...:!!||| ! ! !:! !!!! ! :!!! |||:!:|||!!.!:!|||| ThrArgValGluTyrAspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgT 221343 : ACTCGTGTTGAATACGATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTT : 221400 26 : rpIleLeuLysProIleGlyAlaTrpProThrSerLeuCysThrThrArgAsnGluLy : 44 ||||||||||||||||||||!.!||||||!.!||| ! !! !:!!! ! |||!: rpIleLeuLysProIleGlyValTrpProAsnSerAlaAsnIleSerThrValGluAr 221401 : GGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAG : 221457 45 : sIleIleSerLysIleLeuIleIleLeuCysTrpSerPheSerLeuPheThrLeuIle : 63 ! !:!!! ! !:!::!!! !:!!:!!|||!::|||.!.! ! !||| !|||:!! gTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLeuIleThrPheLeuLeuVal 221458 : ATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTA : 221514 64 : ProGlyLeuLeuHisPheLeuLeuGluLysGluAspIleTyrLeuLysLeuLysThrV : 83 ||| !! !|||:!! ! :!!|||||| !||||||:!!||| !!:!:!!||| !: ProCysSerLeuTyrValIleLeuGluValGluAspValTyrAsnArgIleLysLeuL 221515 : CCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGT : 221574 84 : alGlyProLeuSerHisTyrCysValGlyGlyPheAsnTyrAlaIleLeuLeuLeuAr : 102 !!|||||||||||| !! ! :!!!.! !.!.!!.||| !:!:|||:!!||| euGlyProLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTy 221575 : TGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTA : 221631 103 : gGluAsnAspIleLeuHisCysIleGluHisIleArgValAspTrpSerIleIleThr : 121 !||||||||||||! !.!.|||||||||!.!|||..! !||||||!.!! !|||||| rGluAsnAspIleArgGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThr 221632 : CGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACT : 221688 122 : LysLysGlnAspGlnGlnValMetLeuLysTyrAlaLysIleGlyArgTyrIleAlaA : 141 ! ...:!!|||:!!.!.:!!|||:!!:!! !!|||! .!!|||||| :!: ! TyrSerLysAspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleM 221689 : TACTCCAAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCA : 221748 142 : laPheCysThrAlaPheLeuGlnGlyGlyValLeuCysThrCysLeuAlaLeuGlyAl : 160 !.!!|||||| !|||:!! ! .!!||| ::: ::!|||:!! ! etIleCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPh 221749 : TGATCTGCACATTTTTCATGTACAGTggtttcgttttttattacatAGCCATACCGTT : 221805 161 : aPheLysThrThrIleLysAsnGlyAsnGluThrIleGluIleTyrSerLeuLeuCys : 179 ! ! ! !! !||| !:!! ...::: ... !!:!!:!!! ! eSerValGlyLysIleProAlaGlnAspValAsnValThrPheIleProMetValPhe 221806 : TAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTT : 221862 180 : ProAlaTyrLysPheProValGlnThr<-><->AsnProThrHisAspIleIleLeuG : 197 ||| !! !:!||| !|||.!.||| !:!|||..!:!!!!:|||:!:!!!. ProPheSerArgPheIleValAspThrArgTyrSerProValAsnGluIleLeuPheS 221863 : CCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCT : 221922 198 : lyThrGlnLeuLeuSerAlaPheIleAsnSerSerSerAlaAlaGlyAlaPheSerLe : 216 .! !|||:!!:!!:!!!.! !:!:! !|||! !.!!:!!!.!|||! !||||| erLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLe 221923 : CGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTT : 221979 217 : uAlaAlaValPheAlaSerHisAlaLeuGlyGlnLeuAsnIleMetValAlaTrpIle : 235 |!.!|||:!!|||||| !||||||! !||||||:!!.!.:!::!!:!!::!|||:!: uValAlaMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeu 221980 : GGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTG : 222036 236 : AsnGluPheValAsnArgProMetGluSerAsnAsnAspAlaTyrValAsnLysIleS : 255 !!..!.!!.:!!||| !!! ! !!!:! ! !|||:!!!.! ! !!..!:!|||: LysHisLeuIleAsnGlyArgAlaAspMetCysAsnAsnVal---AspArgArgIleA 222037 : AAACATTTGATCAACGGCCGGGCGGATATGTGTAACAACGTG---GATAGGAGAATAG : 222093 256 : erIleIleValGluHisHisLeuArgValLeuSerPheIle : 268 !!! ||||||.!.!!.|||:!!|||:!!|||..!!:!:!! laLysIleValAsnGlnHisValArgIleLeuGlnTyrVal 222094 : CGAAGATTGTGAATCAACACGTTCGAATATTGCAGTATGTA : 222134 vulgar: AfOr46 5 268 . KQ414889.1 221342 222134 + 391 M 183 549 G 0 6 M 61 183 G 1 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221343 222134 391 + . gene_id 11 ; sequence AfOr46 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221343 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221343 222134 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221343 222134 391 + . alignment_id 11 ; Query AfOr46 ; Align 221343 6 549 ; Align 221898 189 183 ; Align 222081 251 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 373 Query range: 18 -> 268 Target range: 217177 -> 217930 19 : SerIleGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProThrSerLeuC : 38 |||||||||!::|||||||||:!:|||||||||!!:||| !||||||!.!|||! ! SerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnSerArgT 217178 : aGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACTCACGTA : 217235 39 : ysThrThrArgAsnGluLysIleIleSerLysIleLeuIleIleLeuCysTrpSerPh : 57 !|||||||||::!..!||||||:!!! !|||:!::!!! ! !||||||!::.!!!! hrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTyrGlyLe 217236 : CCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTACGGTTT : 217292 58 : eSerLeuPheThrLeuIleProGlyLeuLeuHisPheLeuLeuGluLysGluAspIle : 76 .! ! !||| !!!!:!!||| !!! !:!!:!! ! !!!|||||| ||||||:!! uIleSerPheLeuPheValProCysSerMetTyrValPheLeuGluValGluAspLeu 217293 : GATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAGATCTC : 217349 77 : TyrLeuLysLeuLysThrValGlyProLeuSerHisTyrCysValGlyGlyPheAsnT : 96 ||| !||||||||| ! !!|||||||||! ! !! ! :!!!.! ! !!!!.| TyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValMetAlaPheValLysT 217350 : TACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGT : 217409 97 : yrAlaIleLeuLeuLeuArgGluAsnAspIleLeuHisCysIleGluHisIleArgVa : 115 || ! !|||:!!:!!!.!:!! ||||||! !.!.|||:!:..!...|||..! yrTyrSerLeuIleValHisLysAlaAspIleArgGluCysValArgArgIleGluAr 217410 : ATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACG : 217466 116 : lAspTrpSerIleIleThrLysLysGlnAspGlnGlnValMetLeuLysTyrAlaLys : 134 !||||||!!!! !:!!! ! :!!:!!|||::!:!!!.!|||:!! ! !!|||!!. gAspTrpArgAsnValArgCysGluLysAspArgGluAlaMetIleValAsnAlaAsn 217467 : GGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAAT : 217523 135 : IleGlyArgTyrIleAlaAlaPheCysThrAlaPheLeuGlnGlyGlyValLeuCysT : 154 .!!|||||| ! :!:!.! !.!!|||||| !|||:!! ! .!!||| ::: PheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheValPheT 217524 : TTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcgtttttt : 217583 155 : hrCysLeuAlaLeuGlyAlaPheLysThrThrIleLysAsnGlyAsnGluThrIleGl : 173 ::!|||:!! ! ! ! ! !! !||| !:::! !|||! !!.!:!! yrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuTh 217584 : attacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTAC : 217640 174 : uIleTyrSerLeuLeuCysProAlaTyrLysPheProValGlnThr<-><->AsnPro : 190 .!! ! !!|||:!!! !||| ! |||!:! !:!!.!.||| !.!||| rPheIleProLeuValPheProPheThrLysTyrIleIleAspThrArgTyrThrPro 217641 : CTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCT : 217697 191 : ThrHisAspIleIleLeuGlyThrGlnLeuLeuSerAlaPheIleAsnSerSerSerA : 210 |||:!!!!:|||:!:!!! ! !||||||:!!:!!!.! !:!:! !.!!! !. ThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleT 217698 : ACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCA : 217757 211 : laAlaGlyAlaPheSerLeuAlaAlaValPheAlaSerHisAlaLeuGlyGlnLeuAs : 229 !!:!!!.!|||! !||||||||||||!.!|||||| !||||||! !||||||:!!.! hrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGl 217758 : CGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGA : 217814 230 : nIleMetValAlaTrpIleAsnGluPheValAsnArgProMetGluSerAsnAsnAsp : 248 .:!::!!:!! !|||:!:.!..!.!!.:!!:!! !! ! !!!:! ! !:!||| uValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgAlaAspMet---SerAsp 217815 : GGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGAGCGGATATG---AGCGAT : 217868 249 : AlaTyrValAsnLysIleSerIleIleValGluHisHisLeuArgValLeuSerPheI : 268 .!! ! !..!!:!|||:!!! !||||||...!!.|||:!!|||:!!|||!.!! !: ThrValAspGlyArgIleAlaSerIleValSerGlnHisValArgIleLeuLysCysV 217869 : ACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTAAAGTGTG : 217928 269 : le : 268 !! al 217929 : TA : 217930 vulgar: AfOr46 18 268 . KQ414889.1 217177 217930 + 373 M 170 510 G 0 6 M 57 171 G 1 0 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217178 217930 373 + . gene_id 12 ; sequence AfOr46 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217178 217930 . + . KQ414889.1 exonerate:protein2genome:local exon 217178 217930 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217178 217930 373 + . alignment_id 12 ; Query AfOr46 ; Align 217178 19 510 ; Align 217694 189 171 ; Align 217865 247 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 331 Query range: 299 -> 404 Target range: 277371 -> 277842 300 : GluTrpSerGluHisAsnIleGlnAsnLeuAlaValTyrValMetIleIleIleSerM : 319 |||||||||!!: !:!!:!!|||!..:!!.!!..!:!! !!||||||:!!||||||| GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 320 : etThrCysAsnIlePheLeuIleAsnTyrIleGlyGluIleLeuThrGluGln >>> : 337 || ||||||||| !:!! !||||||||||||||||||||||||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 338 : > Target Intron 1 >>>> CysLysLysIleGlyGluIleValTyrMetThrA : 348 72 bp |||||||||:!!||||||:!:||||||||||||| ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 349 : snTrpTyrGluLeuSerAsnLysAspIlePheAsnLeuMetMetIleIleSerArgSe : 367 |||||||| ! ||| !!:!!|||||||||.!!||||||:!::!:|||||||||||||| snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 368 : rSerValSerValAsnMetSerAlaGlyLysLeuIleAsnMetSerValLeuThrPhe : 386 ||||::: :::...::::::|||||||||||||||...|||||||||! !|||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 387 : GlyAsn >>>> Target Intron 2 >>>> IleValLysSerValPheValTy : 396 |||:!! 84 bp :!!:!!|||!!!..!|||...|| GlyAsp++ ++ValIleLysThrThrPheAlaTy 277703 : GGCGATgt.........................agGTAATAAAAACCACTTTCgcgta : 277816 397 : rLeuAsnMetLeuArgGlnMetThr : 404 |||||||:::|||||||||! !||| rLeuAsnIleLeuArgGlnThrThr 277817 : tttaaatattctacgCCAAACGACG : 277842 vulgar: AfOr46 299 404 . KQ414889.1 277371 277842 + 331 M 37 111 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277842 331 + . gene_id 13 ; sequence AfOr46 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277842 331 + . alignment_id 13 ; Query AfOr46 ; Align 277372 300 111 ; Align 277555 337 156 ; Align 277795 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 325 Query range: 16 -> 265 Target range: 208209 -> 208959 17 : GluTyrSerIleGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProThrS : 36 ...!:!!:!:!!!::.!.||| !|||! |||||| !||||||:!!||||||! !| SerPheAsnValArgLeuAsnValTrpThrLeuLysIleIleGlySerTrpProArgS 208210 : AGCTTCAACGTTCGTCTGAACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGAT : 208267 37 : erLeuCysThrThrArgAsnGluLysIleIleSerLysIleLeuIleIleLeuCysTr : 55 ||:!! ! !:!! !! |||!!.! ! !! :!!|||! !:!!||| !! erIleAspArgSerTrpLeuGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHi 208268 : CTATAGATCGTTCCTGGTTAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCA : 208324 56 : pSerPheSerLeuPheThrLeuIleProGlyLeuLeuHisPheLeuLeuGluLysGlu : 74 !!!!!. ! !|||! !:!!|||||| ! !:!! ! :!!|||! ! ||| sCysLeuLeuGlyPheIleValIleProThrGlyMetPheAlaIleLeuValValGlu 208325 : CTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAG : 208381 75 : AspIleTyrLeuLysLeuLysThrValGlyProLeuSerHisTyrCysValGlyGlyP : 94 |||.!!||| !:!!||||||! ! !.!! !!|||||| !!:! :!!!.! ! AspPheTyrAspGlnLeuLysIleCysSerAlaLeuSerPhePheMetMetAlaPheT 208382 : GATTTTTACGACCAATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCA : 208441 95 : heAsnTyrAlaIleLeuLeuLeuArgGluAsnAspIleLeuHisCysIleGluHisIl : 113 !!.|||!.!|||:!! !:!!||||||..!||||||! ! ! |||:!!|||:!!:! hrLysTyrValIleMetThrValArgGluGlyAspIleArgLysCysValGluTyrVa 208442 : CGAAGTACGTGATCATGACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGT : 208498 114 : eArgValAspTrpSerIleIleThrLysLysGlnAspGlnGlnValMetLeuLysTyr : 132 !..!!.!||||||!!!! !:!: ! ! :!!:!!|||::!:!!:!!|||||| ! !! lGluAlaAspTrpArgAsnValGluHisGluGluAspArgLysIleMetLeuAspAsn 208499 : CGAGGCTGATTGGAGAAACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAAC : 208555 133 : AlaLysIleGlyArgTyrIleAlaAlaPheCysThrAlaPheLeuGlnGlyGlyValL : 152 |||!...!!!.!||| ! :!: !!.!.!.||| !||||||:!! ! |||||||||: AlaSerPheAlaArgLysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyValI 208556 : GCGAGTTTCGCCAGGAAACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaa : 208615 153 : euCysThrCysLeuAlaLeuGlyAlaPheLysThrThrIle<-><->LysAsnGlyAs : 169 :: :!!|||||| ! ! !::! !! !:!! :!!..!||||| lePheTyrTyrIleAlaLeuProLeuThrArgAspLysValValGluGluGlyGlyAs 208616 : ttttctattacaTCGCTTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAA : 208672 170 : nGluThrIleGluIleTyrSerLeuLeuCysProAlaTyrLysPheProValGlnThr : 188 | !||| !..!! !! !! ! !||| !!:!! .!. !|||!:! ! nLeuThrTyrArgArgLeuValTyrProValProLysPheIleLeuAspValArgTyr 208673 : TTTGACGTACAGAAGGCTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATAC : 208729 189 : AsnProThrHisAspIleIleLeuGlyThrGlnLeuLeuSerAlaPheIleAsnSerS : 208 !:!|||..!:!!!!:|||.!!! ! !..!||||||||||||!.!|||:!! ! !! SerProValAsnGluIlePheTyrThrValGlnLeuLeuSerGlyPheValAlaHisA 208730 : AGTCCTGTGAATGAGATTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATA : 208789 209 : erSerAlaAlaGlyAlaPheSerLeuAlaAlaValPheAlaSerHisAlaLeuGlyGl : 227 :!! !.!!!.!||||||! !.!!|||||||||:!!.!!|||! !||||||! !||||| snIleThrValGlyAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGl 208790 : ATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACA : 208846 228 : nLeuAsnIleMetValAlaTrpIleAsnGluPheValAsnArgProMetGluSerAsn : 246 ||||.!.|||:!!:!!:!!|||!!:.!.:!!!!.|||:!! ! !|||..!.!. nLeuGlnIleLeuMetSerTrpMetGluLysLeuValAsp---GlyArgGluAspGlu 208847 : GCTGCAGATTTTGATGTCCTGGATGGAGAAGTTGGTCGAT---GGACGGGAGGACGAG : 208900 247 : AsnAspAlaTyrValAsnLysIleSerIleIleValGluHisHisLeuArgValLeu : 265 .!. ! !! ! !.!.!:!:!::!!! !|||||||||!!.|||:!!||||||:!! GluLysAsnLeuAspGlnArgLeuAlaAsnIleValGluGlnHisValArgValIle 208901 : GAGAAGAATTTGGATCAGAGGTTGGCTAATATCGTGGAGCAGCATGTTCGAGTGATC : 208959 vulgar: AfOr46 16 265 . KQ414889.1 208209 208959 + 325 M 149 447 G 0 6 M 75 225 G 1 0 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208210 208959 325 + . gene_id 14 ; sequence AfOr46 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208210 208959 . + . KQ414889.1 exonerate:protein2genome:local exon 208210 208959 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208210 208959 325 + . alignment_id 14 ; Query AfOr46 ; Align 208210 17 447 ; Align 208663 166 225 ; Align 208888 242 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 324 Query range: 296 -> 402 Target range: 264528 -> 265004 297 : IleLeuAlaGluTrpSerGluHisAsnIleGlnAsnLeuAlaValTyrValMetIleI : 316 :!!!!! !||||||..!...|||:::||||||||||||..!..!||| !!||||||: ValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleL 264529 : GTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATAC : 264586 317 : leIleSerMetThrCysAsnIlePheLeuIleAsnTyrIleGlyGluIleLeuThrGl : 335 !:||||||||| ! !!||||||||||||!!: !||||||||||||||||||||||| euIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGl 264587 : TGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGA : 264643 336 : uGln >>>> Target Intron 1 >>>> CysLysLysIleGlyGluIleValT : 345 |||| 78 bp |||||||||:!!||||||:!:|||| uGln++ ++CysLysLysValGlyGluValValT 264644 : Gcaggt.........................agTGTAAGAAAGTTGGTGAGGTGGTTT : 264751 346 : yrMetThrAsnTrpTyrGluLeuSerAsnLysAspIlePheAsnLeuMetMetIleIl : 364 |||||:!!||||||||| ! ||| !! !!|||||||||.!!:!!|||!!::!:||||| yrMetSerAsnTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLeuIleIl 264752 : ACATGTCGAATTGGTATTACTTACCCTACAAAGATATCCTTGATCTGATTCTCATCAT : 264808 365 : eSerArgSerSerValSerValAsnMetSerAlaGlyLysLeuIleAsnMetSerVal : 383 |! !|||||||||||| ! !!!!..!.!!!|||||||||:!!:!!:!!||||||:!! eLeuArgSerSerValValPheLysPheThrAlaGlyLysIleLeuHisMetSerMet 264809 : TTTAAGATCCAGCGTGGTGTTTAAATTCACCGCTGGAAAGATACTTCACATGTCCATG : 264865 384 : LeuThrPheGlyAsn >>>> Target Intron 2 >>>> IleValLysSerVa : 393 ! !||||||.!!:!! 80 bp :!!:!!|||||| TyrThrPheSerAsp++ ++ValIleLysSerSe 264866 : TACACATTCAGTGACgt.........................aggTAATCAAATCCTC : 264975 394 : lPheValTyrLeuAsnMetLeuArgGln : 402 !|||..!|||||||||:!:||||||||| rPheThrTyrLeuAsnLeuLeuArgGln 264976 : TTTCACGTACTTAAACTTACTTCGCCAA : 265004 vulgar: AfOr46 296 402 . KQ414889.1 264528 265004 + 324 M 40 120 5 0 2 I 0 74 3 0 2 M 52 156 5 0 2 I 0 76 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264529 265004 324 + . gene_id 15 ; sequence AfOr46 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264529 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264529 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264726 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265004 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265004 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264529 265004 324 + . alignment_id 15 ; Query AfOr46 ; Align 264529 297 120 ; Align 264727 337 156 ; Align 264963 389 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 311 Query range: 18 -> 268 Target range: 212875 -> 213628 19 : SerIleGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProThrSerLeuC : 38 |||||| !!::|||||||||:!!|||||||||! ||| !|||||| !!.!! !! SerIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspLysSerT 212876 : agtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCT : 212933 39 : ysThrThrArgAsnGluLysIleIleSerLysIleLeuIleIleLeuCysTrpSerPh : 57 !..!:!!! !! !||||||! !|||:!!::!:!::!!! !! !:!!|||!::.!!!! yrValSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLe 212934 : ACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTT : 212990 58 : eSerLeuPheThrLeuIleProGlyLeuLeuHisPheLeuLeuGluLysGluAspIle : 76 .! ! !!:! !:!!|||||| !! !|||:!! ! !!!|||!!: !|||:::||| uIleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGluAsnIle 212991 : GATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatata : 213047 77 : TyrLeuLysLeuLysThrValGlyProLeuSerHisTyrCysValGlyGlyPheAsnT : 96 ::: ::::!!:!! ! !!||| !!!!:!! !! ! !.!!.! !!::!!.| PheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysT 213048 : tttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGT : 213107 97 : yrAlaIleLeuLeuLeuArgGluAsnAspIleLeuHisCysIleGluHisIleArgVa : 115 || ! |||:!!|||!.!! :!!||||||! ! |||:!!||||||!!:!:! yrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMetLysTy 213108 : ATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATA : 213164 116 : lAspTrpSerIleIleThrLysLysGlnAspGlnGlnValMetLeuLysTyrAlaLys : 134 !||||||!.!! !|||||| ! :!!:!!|||:!!:!!:!!||| ! ! !!|||!.. rAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSer 213165 : TGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGC : 213221 135 : IleGlyArgTyrIleAlaAlaPheCysThrAlaPheLeuGlnGlyGlyValLeuCysT : 154 .!!|||!:! |||!.!.!!.!!|||.!! !|||:!! ! !||| !! !! ! PheGlyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheThrPheT 213222 : TTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTT : 213281 155 : hrCysLeuAla<-><->LeuGlyAlaPheLysThrThrIleLysAsnGlyAsnGluTh : 171 !! !|||!.! :!!.!!||| !|||! !..! :!!:!! !|||! !|| yrPheLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAsnValTh 213282 : ATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGAC : 213338 172 : rIleGluIleTyrSerLeuLeuCysProAlaTyrLysPheProValGlnThrAsnPro : 190 |.!!..! ! !:!!! ! ! !! !!:!! !! !|||!:! !!:!||| rPheArgGlnMetValValProValSerArgPheIleValAspValArgTyrSerPro 213339 : ATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCT : 213395 191 : ThrHisAspIleIleLeuGlyThrGlnLeuLeuSerAlaPheIleAsnSerSerSerA : 210 ..!:!!!!:|||.!!!!! !! !|||:!!:!!:!!!.! ! :!:! ! !:!!! !| ValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleA 213396 : GTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTG : 213455 211 : laAlaGlyAlaPheSerLeuAlaAlaValPheAlaSerHisAlaLeuGlyGlnLeuAs : 229 ||!.!! !|||! !||||||||||||||||||||| !||||||! !||||||:!!.. laValValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGl 213456 : CGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGG : 213512 230 : nIleMetValAlaTrpIleAsnGluPheValAsnArgProMetGluSerAsnAsnAsp : 248 !|||:!!:!!::!|||:!:.!..!.!!.:!!:!! !! |||..!! !:! ! yIleLeuMetSerTrpLeuGluHisLeuIleAsp---GlyArgGluAspMetSerLys 213513 : CATTTTGATGAGCTGGCTGGAACATTTGATAGAC---GGTAGAGAGGATATGAGCAAG : 213566 249 : AlaTyrValAsnLysIleSerIleIleValGluHisHisLeuArgValLeuSerPheI : 268 ! ! !:!!!:!|||:!!:!!||||||.!.!!.|||:!!|||:!!|||!.!!::: AsnValAspAspArgIleAlaValIleValAsnGlnHisValArgIleLeuLysTrpV 213567 : AATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTGAAGTGGG : 213626 269 : le : 268 !: al 213627 : TG : 213628 vulgar: AfOr46 18 268 . KQ414889.1 212875 213628 + 311 M 139 417 G 0 6 M 83 249 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212876 213628 311 + . gene_id 16 ; sequence AfOr46 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212876 213628 . + . KQ414889.1 exonerate:protein2genome:local exon 212876 213628 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212876 213628 311 + . alignment_id 16 ; Query AfOr46 ; Align 212876 19 417 ; Align 213299 158 249 ; Align 213548 242 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 302 Query range: 17 -> 265 Target range: 303196 -> 304866 18 : TyrSerIleGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProThrSerL : 37 ||| !! !:!! !!:!!:!|||||||||||| !!:!!||| !||||||.!! !| TyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTrpProAlaValL 303197 : TACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTGGCCAGCCGTGT : 303254 38 : euCysThrThrArgAsnGluLysIleIleSerLysIleLeuIleIleLeuCysTrpSe : 56 || ! !||| !... .!!:!! !!|||||| !||| !||| !! ! euAspGluThrAlaGly------PheLeuProLysIleThrIleGlyLeuSerAsnLe 303255 : TGGACGAAACCGCAGGA------TTCCTACCAAAAATCACCATTGGACTCAGTAATTT : 303305 57 : rPheSerLeuPheThrLeuIleProGlyLeuLeuHisPheLeuLeuGluLysGluAsp : 75 ! !! !|||||||||:!!|||||| !!:!!||||||.!.:!!!!!|||:!!:!!||| uValLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnLysAsp 303306 : GGTTCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAAAGGAT : 303362 76 : IleTyrLeuLysLeuLysThrValGlyProLeuSerHisTyrCysValGlyGlyPheA : 95 ! :!!!:!|||||| ! !!|||! !|||||| !! !! :!!..! !.!.! ThrIleIleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLeuMetL 303363 : ACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTTGATGA : 303422 96 : snTyrAlaIleLeuLeuLeuArgGluAsnAspIleLeuHisCysIleGluHisIleAr : 114 !.||| ! !||| ! !|||:!! ||| !.!.|||||||||.!.:!:!: ysTyrTrpAlaLeuAlaThrArgLysProArgIleLysGluCysIleGluGluValGl 303423 : AGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAGGTGCA : 303479 115 : gValAspTrpSerIle >>>> Target Intron 1 >>>> IleThrLysLysG : 124 ! !||||||!.! 938 bp :!: !... : nSerAspTrpLysGlu++ ++ValGluSerLeuA 303480 : AAGTGATTGGAAAGAGgt.........................agGTGGAATCTCTCA : 304447 125 : lnAspGlnGlnValMetLeuLysTyrAlaLysIleGlyArgTyrIleAlaAlaPheCy : 143 :!|||!:::!!:!!||||||||||||!.!:!!!!:|||||| !!:!:.!! !.!!|| rgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIleCy 304448 : GAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAATCTG : 304504 144 : sThrAlaPheLeu<->GlnGlyGlyValLeuCysThrCysLeuAlaLeuGlyAlaPhe : 161 |.!! !|||:!! ||||||..!:!!! ! ! :!! !! ! !||| ! sAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheAlaThr 304505 : CGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCGACC : 304561 162 : LysThrThrIleLysAsnGlyAsnGluThrIleGluIleTyrSerLeuLeuCysProA : 181 !||| !:!: ! .!. !|||...||||||:!! ! !! !! ! ! !: GlyThrTyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProThrTyrS 304562 : GGAACGTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACCTACA : 304621 182 : laTyrLysPheProValGlnThrAsnProThrHisAspIleIleLeuGlyThrGlnLe : 200 :! ! !||| !|||||||||!:!|||! !:!!!!::!::!!! ! !..!!!.! erAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheValHisCy 304622 : GTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCATTG : 304678 201 : uLeuSerAlaPheIleAsnSerSerSerAlaAlaGlyAlaPheSerLeuAlaAlaVal : 219 !:!!!!!!.!!:!:!!! !! !|||! !.!!|||||||||! !.!!|||||||||:!! sMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeu 304679 : CATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCTT : 304735 220 : PheAlaSerHisAlaLeuGlyGlnLeuAsnIleMetValAlaTrpIleAsnGluPheV : 239 ||||||!!!||||||! !||||||:!!:!!|||:!::!!:!! ! :!:..!!!:.!!| PheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAspLeuV 304736 : TTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGATCTTG : 304795 240 : alAsnArgProMetGluSerAsnAsnAspAlaTyrValAsnLysIleSerIleIleVa : 258 |||||!!! ! ..!|||:!! ||| !!.::!:!!! ! !||||| alAsnSerLysGluSerSerAspLeuAsp---------LysArgLeuIleGluIleVa 304796 : TCAACAGCAAAGAATCATCTGATTTAGAT---------AAACGATTAATAGAAATTGT : 304843 259 : lGluHisHisLeuArgValLeu : 265 ||||||||||||||||:!!||| lGluHisHisLeuArgIleLeu 304844 : TGAGCATCATTTGCGAATTTTA : 304866 vulgar: AfOr46 17 265 . KQ414889.1 303196 304866 + 302 M 25 75 G 2 0 M 75 225 5 0 2 I 0 934 3 0 2 M 28 84 G 0 3 M 101 303 G 3 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303197 304866 302 + . gene_id 17 ; sequence AfOr46 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303197 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303197 303496 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304866 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304866 . + . insertions 3 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 303197 304866 302 + . alignment_id 17 ; Query AfOr46 ; Align 303197 18 75 ; Align 303272 45 225 ; Align 304435 120 84 ; Align 304522 148 303 ; Align 304825 252 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 289 Query range: 16 -> 265 Target range: 289732 -> 290479 17 : GluTyrSerIleGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProThrS : 36 ...|||!!!.!!:!!!!. !!.!||||||||||||||||||||| !!::||| ! ArgTyrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrProPheV 289733 : CGTTACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCG : 289790 37 : erLeuCys<->ThrThrArgAsnGluLysIleIleSerLysIleLeuIleIleLeuCy : 54 !!!! !! .!!!:!|||..!|||::!! ||| !:!:||||||:!::!!|| alPheSerArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLeuValCy 289791 : TCTTTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATG : 289847 55 : sTrpSerPheSerLeuPheThrLeuIleProGlyLeuLeuHisPheLeuLeuGluLys : 73 |!! |||.!! !! !|||! !:!!:!!||| ! !! !||| !!|||!!!... ! sCysSerIleLeuGlnPheIleIleValProPheSerHisHisValLeuPheSerAsp 289848 : TTGCTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGAC : 289904 74 : GluAspIleTyrLeuLysLeuLysThrValGlyProLeuSerHisTyrCysValGlyG : 93 .!.|||!!: !! ! :!!|||!.!:!!|||||||||!!! !! !! ..! ! AsnAspMetAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuThrThrP 289905 : AACGACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGT : 289964 94 : lyPheAsnTyrAlaIleLeuLeuLeuArgGluAsnAspIleLeuHisCysIleGluHi : 112 !|||!!.|||..! !!!! !:!!!:!! :::! ||| !!.!|||:!::!!|| hePheLysTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysValLysHi 289965 : TCTTCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACA : 290021 113 : sIleArgValAspTrpSerIleIleThrLysLysGlnAspGlnGlnValMetLeuLys : 131 ||||..! !||||||!.!!!::!: ! ! :!!.!. !!!:: :!!||||||!:! sIleGluArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMetLeuArg 290022 : CATCGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGA : 290078 132 : TyrAlaLysIleGlyArgTyrIleAlaAlaPheCysThrAlaPheLeuGlnGlyGlyV : 151 |||!.!! !!!:.!!||| !!:!! ! !.!.|||.!! !|||||| ! !|||! TyrValThrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyG 290079 : TACGTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTG : 290138 152 : alLeuCysThrCysLeuAlaLeuGlyAlaPheLysThrThrIleLysAsnGlyAsnGl : 170 !|||! ! ! ! !!.!:!! ! !|||..!! !! !! ! !|||||||||! lyLeuSerTyrAsnThrValIleProLeuPheSerLysLysSerValAsnGlyAsnVa 290139 : GTCTGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGGTAACGT : 290195 171 : uThrIleGluIleTyrSerLeuLeuCysProAlaTyrLysPheProValGlnThrAsn : 189 !||||||..! ! !!!! !! ! !! !! ! ! ||| !||||||! !!:! lThrIleArgProLeuThrTyrProGlyTyrGluGluPhePheAspValGlnLysSer 290196 : GACTATCAGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGT : 290252 190 : ProThrHisAspIleIleLeuGlyThrGlnLeuLeuSerAlaPheIleAsnSerSerS : 209 |||.!!:!!!!:|||:!!!!! !!! !!!.! !:!!! !!.!.!.|||!..:!!!:!! ProAlaTyrGluIleValPheCysMetHisCysValTyrValMetIleThrAlaAsnI 290253 : CCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACA : 290312 210 : erAlaAlaGlyAlaPheSerLeuAlaAlaValPheAlaSerHisAlaLeuGlyGlnLe : 228 !.!! !!.!|||!:!||||||.!!.!!:!!||||||!!!|||.!!! !||||||:! leThrMetAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGlnIl 290313 : TCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGAT : 290369 229 : uAsnIleMetValAlaTrpIleAsnGluPheValAsnArgProMetGluSerAsnAsn : 247 !!!.|||.....!.!! !!:!:.!.!!:.!...!!!.||| !||| !! !.!.!!. eLysIleGlnThrThrArgLeuGluAspLeuThrLysArgGlyMetLeuLeuGluLys 290370 : TAAGATACAAACGACGCGGCTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAGAAG : 290426 248 : AspAlaTyrValAsnLysIleSerIleIleValGluHisHisLeuArgValLeu : 265 !.! !:!!::::!::!!:!!:!!|||... !|||:!!..!:!!||| ---GlyValSerAspArgLeuAlaValValValSerGlyHisValGluIleLeu 290427 : ---GGAGTGAGTGATCGTTTGGCGGTTGTTGTGAGCGGTCACGTGGAGATCTTG : 290479 vulgar: AfOr46 16 265 . KQ414889.1 289732 290479 + 289 M 22 66 G 0 3 M 209 627 G 1 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289733 290479 289 + . gene_id 18 ; sequence AfOr46 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289733 290479 . + . KQ414889.1 exonerate:protein2genome:local exon 289733 290479 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 289733 290479 289 + . alignment_id 18 ; Query AfOr46 ; Align 289733 17 66 ; Align 289802 39 627 ; Align 290429 249 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 250 Query range: 299 -> 394 Target range: 272836 -> 273191 300 : GluTrpSerGluHisAsnIleGlnAsnLeuAlaValTyrValMetIleIleIleSerM : 319 ||||||!!!!!:|||:!!.!!|||!:!|||.!!..!||| !!||||||:!!||||||| GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 320 : etThrCysAsnIlePheLeuIleAsnTyrIleGly >>>> Target Intron 1 : 331 ||||| |||||||||:::::! !||||||||| 70 bp etThrPheAsnIlePheIleValCysTyrIleGly+- 272895 : TgacttttaacatttttatagtATGTTACATCGGCga..................... : 272932 332 : >>>> GluIleLeuThrGluGlnCysLysLysIleGlyGluIleValTyrMetThrA : 348 ::: ::: |||||||||||||||||||||:!!||||||||||||| -+LysLysAsnSer***GlnCysLysLysIleGlyGluValValTyrMetThrA 272933 : ....cgaagaaaaattcttaacagtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 349 : snTrpTyrGluLeuSerAsnLysAspIlePheAsnLeuMetMetIleIleSerArgSe : 367 |||||||| ! ||| !!..!|||||||||.!!:!!|||!!::!!||||||||||||!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 368 : rSerValSerValAsnMetSerAlaGlyLysLeuIleAsnMetSerValLeuThrPhe : 386 !|||||| !:!!!!.!!:!!!||||||!:!:!!:!! !|||||||||! !|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 387 : GlyAsnIleValLysSerValPhe : 394 |||:!!:!! ......:::||| GlyAspValArgSerGlnLeuPhe 273166 : GGCGATGTACgttctcaattattt : 273191 vulgar: AfOr46 299 394 . KQ414889.1 272836 273191 + 250 M 31 93 5 0 2 I 0 66 3 0 2 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273191 250 + . gene_id 19 ; sequence AfOr46 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272929 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272930 272931 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 272930 272999 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 272998 272999 . + . intron_id 0 ; splice_site "cg" KQ414889.1 exonerate:protein2genome:local cds 273000 273191 . + . KQ414889.1 exonerate:protein2genome:local exon 273000 273191 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273191 250 + . alignment_id 19 ; Query AfOr46 ; Align 272837 300 93 ; Align 273000 331 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 236 Query range: 16 -> 264 Target range: 204233 -> 204974 17 : GluTyrSerIleGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProThrS : 36 ..!|||:!!! !!::||| !:! !|||||| ! !:!!||||||||||||! ! ArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaTrpProIleP 204234 : AGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGTGGCCGATTC : 204291 37 : erLeuCysThrThrArgAsnGluLysIleIleSerLysIleLeuIleIleLeuCysTr : 55 !!:!! !:!!:!!! ! ! !!:!:!!:!! !!::!||| ! !:!!:!! !:: roValAsnSerSerProPheThrArgLeuValArgArgIleGluHisValValThrTy 204292 : CAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGTAGTCACCta : 204348 56 : pSerPheSerLeuPheThrLeuIleProGlyLeuLeuHisPheLeuLeuGluLysGlu : 74 : ... ...... !:!!:!!||||||||||||:!! ! !!!|||:!!:!!:!! rPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheLeuLysGluLys 204349 : tttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAG : 204405 75 : AspIleTyrLeuLysLeuLysThrValGlyProLeuSerHisTyrCysValGlyGlyP : 94 :!! ! ! :!!:::||||||! !:!!||||||:!! !:!!! ! !!:!! ! !| AsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSerIleGlnPheP 204406 : AACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCATACAGTTCT : 204465 95 : heAsnTyrAlaIleLeuLeuLeuArgGluAsnAspIleLeuHisCysIleGluHisIl : 113 ||!!.|||:!!:!!:!!|||! !||| :!! ! |||! ! ! !!:!:.!. !|| heLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSerLeuAsnThrIl 204466 : TCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGTTTGAACACCAT : 204522 114 : eArgValAspTrpSerIleIleThrLysLysGlnAspGlnGlnValMetLeuLysTyr : 132 |||| !|||||| ||| .!!! ! ! :!!:!!!:! !:!!.!.! !..! ! eArgArgAspTrp---IleGluAlaThrAspGluAsnArgLeuIlePheArgSerLys 204523 : CAGACGCGACTGG---ATAGAGGCTACGGATGAAAATCGGTTGATTTTCCGCTCGAAA : 204576 133 : AlaLysIleGlyArgTyrIleAlaAlaPheCysThrAlaPheLeuGlnGlyGlyValL : 152 ||||||||||||||| :!: ! !.!!....!!||| !:!! ! ||||||! !| AlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetTyrGlyGlyGlyL 204577 : GCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGTACGGCGGTGGTT : 204636 153 : euCysThrCysLeuAlaLeuGlyAlaPheLysThrThrIleLysAsnGlyAsnGluTh : 171 ||||| ! ! ! !||| ! !!!.!:! !|||||| !!.. !!!:!. euCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleValThr---ProAspAs 204637 : TGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTAACA---CCTGATAA : 204690 172 : rIleGluIleTyrSerLeuLeuCysProAlaTyr<-><->LysPheProValGlnThr : 188 !:!! ||| !!|||! !||||||!.!||| ||| ! !||| ! nValThrIleArgProLeuProCysProValTyrPheValPhePheAsnGluGlnArg 204691 : CGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaacGAGCAACGT : 204747 189 : AsnProThrHisAspIleIleLeuGlyThrGlnLeuLeuSerAlaPheIleAsnSerS : 208 :::|||!.!:!!!!:|||:!!!!! ! !|||:!!:!!:!!!.!|||:!!!.!! !: SerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheValThrTyrA 204748 : TCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTGTTACTTACG : 204807 209 : erSerAlaAlaGlyAlaPheSerLeuAlaAlaValPheAlaSerHisAlaLeuGlyGl : 227 !! ! !::!|||.!!! !.!!:!!..!|||:!!|||!.! !||||||! !.!!.. laValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAlaCysSerMe 204808 : CTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGCGTGCAGCAT : 204864 228 : nLeuAsnIleMetValAlaTrpIleAsnGluPheValAsnArgProMetGluSerAsn : 246 !|||!..|||:!!||| ! !!!:|||! !.!!|||:!!!:! !!!:! !!.! tLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLys---AlaAspMetThr 204865 : GCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAG---GCGGACATGACC : 204918 247 : AsnAspAlaTyrValAsnLysIleSerIleIleValGluHisHisLeuArgVal : 264 .!. ! !!..||||||:!! !|||||||||:!!!!. !!:!:!! GluThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrLysIle 204919 : GAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGAAGATA : 204974 vulgar: AfOr46 16 264 . KQ414889.1 204233 204974 + 236 M 101 303 G 1 0 M 49 147 G 1 0 M 14 42 G 0 6 M 59 177 G 1 0 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204234 204974 236 + . gene_id 20 ; sequence AfOr46 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204234 204974 . + . KQ414889.1 exonerate:protein2genome:local exon 204234 204974 . + . insertions 6 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 204234 204974 236 + . alignment_id 20 ; Query AfOr46 ; Align 204234 17 303 ; Align 204537 119 147 ; Align 204684 169 42 ; Align 204732 183 177 ; Align 204909 243 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 335 -> 404 Target range: 254271 -> 254567 336 : GlnCysLysLysIleGlyGluIleValTyrMetThrAsnTrpTyrGluLeuSerAsnL : 355 |||||| !|||:!!||||||:!:||||||||||||:!!|||||| ! ||| !!.!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 356 : ysAspIlePheAsnLeuMetMetIleIleSerArgSerSerValSerValAsnMetSe : 374 :! |||.!!:!!|||!!::!!||||||!!!||||||!:!||| !|||.!.!!:!! rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 375 : rAlaGlyLysLeuIleAsnMetSerValLeuThrPheGlyAsn >>>> Target I : 389 !|||||||||:::...:::||||||:!!! !|||||||||:!! 89 rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt............. : 254433 390 : ntron 1 >>>> IleValLysSerValPheValTyrLeuAsnMetLeuArgGlnMe : 403 bp :!!||||||!!!! !|||!.!||||||||||||||| !!||||| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMe 254434 : ............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAAAT : 254562 404 : tThr : 404 |:!! tSer 254563 : GTCC : 254567 vulgar: AfOr46 335 404 . KQ414889.1 254271 254567 + 205 M 53 159 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254567 205 + . gene_id 21 ; sequence AfOr46 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254272 254430 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254430 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254431 254432 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254431 254519 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254518 254519 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254520 254567 . + . KQ414889.1 exonerate:protein2genome:local exon 254520 254567 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254567 205 + . alignment_id 21 ; Query AfOr46 ; Align 254272 336 159 ; Align 254520 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 189 Query range: 299 -> 394 Target range: 219328 -> 219686 300 : GluTrpSerGluHisAsnIleGlnAsnLeuAlaValTyrValMetIleIleIleSerM : 319 ||||||!.!..!:!!:!!:!! !!:! !!.!..!|||:!!!!::!!:!!||||||: GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 320 : etThrCysAsnIlePheLeuIleAsnTyrIleGlyGluIleLeuThrGluGln >>> : 337 !:||| |||||||||:::... |||||||||||||||:!!.!!|||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln++ 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAggt... : 219442 338 : > Target Intron 1 >>>> CysLysLysIleGlyGluIleValTyrMetThrA : 348 73 bp |||:::||||||||||||::: !||||||! !. ++CysArgLysIleGlyGluMetSerTyrMetIleG 219443 : ......................agTGtaggaaaattggagaaatgtCGTACATGATCG : 219546 349 : snTrpTyrGluLeuSerAsnLysAspIlePheAsnLeuMetMetIleIleSerArgSe : 367 !.||||||..!|||!!!...||| ! ! .!! !:!::!!! !|||:!!! !|| luTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaMetSe 219547 : AATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTATGTC : 219603 368 : rSerValSerValAsnMetSerAlaGlyLysLeuIleAsnMetSerValLeuThrPhe : 386 |!:! !|||:!!!!.:!!!!!||||||!!.:!!:!!.!.:!!|||:!! !|||||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPhe 219604 : GAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCACTTTT : 219660 387 : GlyAsnIleValLysSerValPhe : 394 !:!!:!: ...:::||| ThrAspValSerIleLysLeuPhe 219661 : ACCGACGTGAGtatcaaattattc : 219686 vulgar: AfOr46 299 394 . KQ414889.1 219328 219686 + 189 M 37 111 5 0 2 I 0 69 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219686 189 + . gene_id 22 ; sequence AfOr46 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219686 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219686 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219686 189 + . alignment_id 22 ; Query AfOr46 ; Align 219329 300 111 ; Align 219513 337 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 182 Query range: 18 -> 195 Target range: 294690 -> 295227 19 : SerIleGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProThrSerLeuC : 38 |||:!!:!!!:! !||| !!:!:||||||||||||||| !|||||| !! !! ! SerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrS 294691 : AGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACA : 294748 39 : ys<->ThrThrArgAsnGluLysIleIleSerLysIleLeuIleIleLeuCysTrpSe : 56 !! |||!:!!:! .!.|||:!!:!!|||! !||||||||| ! !||| !! erHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLe 294749 : GTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTT : 294805 57 : rPheSerLeuPheThrLeuIleProGlyLeuLeuHisPheLeuLeuGluLysGluAsp : 75 ! ! !||||||..!|||:!:||| !! !! ! !! !:!!!!!.!. :::::: uThrValLeuPheValLeuValProCysGlyTyrPheCysValPheHisValLysAsn 294806 : GACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaac : 294862 76 : IleTyrLeuLysLeuLysThrValGlyProLeuSerHisTyrCysValGlyGlyPheA : 95 ::: ||||||:!!||| !:!!||||||:!! !:!!! ! :!!..! !.!!! ValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuA 294863 : gtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCA : 294922 96 : snTyrAlaIleLeuLeuLeuArgGluAsnAspIleLeuHisCysIleGluHisIleAr : 114 ..|||::! !|||:!!|||!:! ! !! .!! !|||||||||||| !!|||.. rgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCysIleGluAspIleGl 294923 : GGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGA : 294979 115 : gValAspTrpSerIleIleThrLysLysGlnAspGlnGlnValMetLeuLysTyrAla : 133 ! !||||||!.!:!:||| !!!. !:!! !!!:! !:!!|||:!!||| !!||| uAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIleMetIleLysAsnAla 294980 : GAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCG : 295036 134 : LysIleGlyArgTyrIleAlaAlaPheCysThrAlaPheLeuGlnGlyGlyValLeuC : 153 ! !:!! !!:! !!:.!!!.! !! !||| !.!.:!! ! .!!..!!.!:!!! MetValThrGlnArgMetThrValAlaPheThrIleIleIleTyrSerSerAlaValS 295037 : ATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGT : 295096 154 : ysThrCysLeuAlaLeuGlyAlaPheLysThrThrIleLysAsn<->GlyAsnGluTh : 171 ! ! ! !::: |||.........:!::!!||| !|||.!.|| erTyrHisAlaIleValProPhePheSerAsnAlaLeuGluAsnLysLysAsnAsnTh 295097 : CGTATCACGCCATTGtgccatttttttcaaacgctTTGGAGAACAAGAAGAATAATAC : 295153 172 : rIleGluIleTyrSerLeuLeuCysProAlaTyrLysPheProValGlnThrAsnPro : 190 ||||... ! !!:!!! ! !! !! !! ! !!.! ! :!!!:!||| rIleArgAlaLeuProIleProGlyTyrGluLeuPheValAspAlaTyrSerSerPro 295154 : GATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGTCCT : 295210 191 : ThrHisAspIleIle : 195 |||:!!!!:|||||| ThrTyrGluIleIle 295211 : ACCTACGAGATCATA : 295227 vulgar: AfOr46 18 195 . KQ414889.1 294690 295227 + 182 M 20 60 G 0 3 M 129 387 G 0 3 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294691 295227 182 + . gene_id 23 ; sequence AfOr46 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294691 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294691 295227 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294691 295227 182 + . alignment_id 23 ; Query AfOr46 ; Align 294691 19 60 ; Align 294754 39 387 ; Align 295144 168 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 333 -> 389 Target range: 234979 -> 235147 334 : ThrGluGlnCysLysLysIleGlyGluIleValTyrMetThrAsnTrpTyrGluLeuS : 353 |||:!!||||||! |||:!!||||||! !||||||||||||.!.||||||..!||| ThrGlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuP 234980 : ACTCAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTAC : 235037 354 : erAsnLysAspIlePheAsnLeuMetMetIleIleSerArgSerSerValSerValAs : 372 !!:!!||| ! !.!!..!|||:!:|||||||||||||||||||||:!! !:!!!! roHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLy 235038 : CTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAA : 235094 373 : nMetSerAlaGlyLysLeuIleAsnMetSerValLeuThrPheGlyAsnIle : 389 .!!:!!!|||||||||!!!:!!.!.||||||||| !|||||||||:!!:!: sIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235095 : AATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: AfOr46 333 389 . KQ414889.1 234979 235147 + 171 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234980 235147 171 + . gene_id 24 ; sequence AfOr46 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234980 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234980 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234980 235147 171 + . alignment_id 24 ; Query AfOr46 ; Align 234980 334 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 169 Query range: 295 -> 389 Target range: 305088 -> 305783 296 : TyrIleLeuAlaGluTrpSerGluHisAsnIleGlnAsnLeuAlaValTyrValMetI : 315 |||::: !!!:|||..!... !|||! ! !:!|||.!!..!|||..!:!!: TyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValL 305089 : tatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGT : 305146 316 : leIleIleSerMetThrCysAsnIlePheLeuIleAsnTyrIleGlyGluIleLeuTh : 334 !!:!:||||||:!:|||! !|||||||||:!!:!! !||||||||||||||||||! euLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMe 305147 : TACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTAT : 305203 335 : rGluGlnCys{Ly} >>>> Target Intron 1 >>>> {s}LysIleGlyGlu : 342 !|||:!! {!.} 413 bp {.}!..:!!||| ! tGluLysVal{Se}-+ ++{r}SerValGlyLeu 305204 : GGAAAAGGTG{ag}tt.........................ag{T}AGCGTTGGATTA : 305640 343 : IleValTyrMetThrAsnTrpTyrGluLeuSerAsnLysAspIlePheAsnLeuMetM : 362 ! !!:!|||! !!:!||||||.!.||| !!!.!||| ||| !..!|||!!:: SerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleL 305641 : TCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTT : 305700 363 : etIleIleSerArgSerSerValSerValAsnMetSerAlaGlyLysLeuIleAsnMe : 381 !:||||||:!!! !|||||| ! !!!.!!!.!!:||||||||||||:!!:!!:!!:! euIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysValValAspLe 305701 : TAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTT : 305757 382 : tSerValLeuThrPheGlyAsnIle : 389 :|||:!!! !||||||||||||:!: uSerLeuSerThrPheGlyAsnVal 305758 : ATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: AfOr46 295 389 . KQ414889.1 305088 305783 + 169 M 42 126 S 0 2 5 0 2 I 0 409 3 0 2 S 1 1 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305089 305783 169 + . gene_id 25 ; sequence AfOr46 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305089 305216 . + . KQ414889.1 exonerate:protein2genome:local exon 305089 305216 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305217 305218 . + . intron_id 1 ; splice_site "tt" KQ414889.1 exonerate:protein2genome:local intron 305217 305629 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305628 305629 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305630 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305630 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305089 305783 169 + . alignment_id 25 ; Query AfOr46 ; Align 305089 296 126 ; Align 305631 339 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 168 Query range: 334 -> 394 Target range: 283273 -> 283453 335 : GluGlnCysLysLysIleGlyGluIleValTyrMetThrAsnTrpTyrGluLeuSerA : 354 ..!||||||||||||:!!||||||:!:|||||||||||||||! !!:! ! ||| !!: ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 355 : snLysAspIlePheAsnLeuMetMetIleIleSerArgSerSerValSerValAsnMe : 373 !!|||||||||.!!||||||:!::!:||||||||||||||||||::: :::...:: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 374 : tSerAlaGlyLysLeuIleAsnMetSerValLeuThrPheGlyAsnIleValLysSer : 392 ::::|||...|||||||||...||||||!.!! !||||||! !:!!:!! !..! ! eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspValArgSerLeu 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTACGTTCACTT : 283445 393 : ValPhe : 394 :!!||| LeuPhe 283446 : CTTTTT : 283453 vulgar: AfOr46 334 394 . KQ414889.1 283273 283453 + 168 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283453 168 + . gene_id 26 ; sequence AfOr46 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283453 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283453 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283453 168 + . alignment_id 26 ; Query AfOr46 ; Align 283274 335 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 335 -> 389 Target range: 238625 -> 238787 336 : GlnCysLysLysIleGlyGluIleValTyrMetThrAsnTrpTyrGluLeuSerAsnL : 355 |||||| !|||:!!||||||:!:||||||||||||:!!|||||| ! ||| !!.!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 356 : ysAspIlePheAsnLeuMetMetIleIleSerArgSerSerValSerValAsnMetSe : 374 :! |||.!!:!!|||!!::!!||||||!.!||||||!:!||| !|||!!.:!:!! rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 375 : rAlaGlyLysLeuIleAsnMetSerValLeuThrPheGlyAsnIle : 389 !|||||||||:!!:!!:!!||||||:!!! !|||||||||:!!:!! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspVal 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTA : 238787 vulgar: AfOr46 335 389 . KQ414889.1 238625 238787 + 162 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238787 162 + . gene_id 27 ; sequence AfOr46 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238787 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238787 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238787 162 + . alignment_id 27 ; Query AfOr46 ; Align 238626 336 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 335 -> 395 Target range: 244655 -> 244835 336 : GlnCysLysLysIleGlyGluIleValTyrMetThrAsnTrpTyrGluLeuSerAsnL : 355 |||||| !|||:!!||||||:!:||||||||||||:!!|||||| ! ||| !!.!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 356 : ysAspIlePheAsnLeuMetMetIleIleSerArgSerSerValSerValAsnMetSe : 374 :! |||.!!:!!|||!!::!!||||||!.!||||||!:!:!! !|||.!.!!:!! rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 375 : rAlaGlyLysLeuIleAsnMetSerValLeuThrPheGlyAsnIleValLysSerVal : 393 !|||||||||:!!:!!:!!||||||:!!! !|||||||||:!!:!! !:!!!!! ! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrLys 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAA : 244827 394 : PheVal : 395 .!!||| LeuVal 244828 : CTTGTT : 244835 vulgar: AfOr46 335 395 . KQ414889.1 244655 244835 + 161 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244835 161 + . gene_id 28 ; sequence AfOr46 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244835 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244835 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244835 161 + . alignment_id 28 ; Query AfOr46 ; Align 244656 336 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 15 -> 230 Target range: 194165 -> 194807 16 : AsnGluTyrSerIleGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpProT : 35 !.!||||||:!!:!!!:! ! !:! !:!!|||! !||||||||| !||||||! ThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProA 194166 : ACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAA : 194223 36 : hrSerLeuCysThrThrArgAsnGluLysIleIleSerLysIleLeuIleIleLeuCy : 54 !..! !! ! ! ! !!..! ::!:!:.!!:!!:!!! ! !:!::!! rgGluAspSerLeuArgAspArgValArgLeuPheAlaGlnThrGlyValVal----- 194224 : GGGAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTC----- : 194277 55 : sTrpSerPheSerLeuPheThrLeuIleProGlyLeuLeuHisPheLeuLeuGluLys : 73 !:::!!!!.! !! !||| !|||:!!||| !:!!:!!:!! !! !!!!!!: -PheAlaLeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCys 194278 : -TTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGC : 194331 74 : GluAspIleTyrLeuLysLeuLysThrValGlyProLeuSerHisTyrCysValGlyG : 93 ||||||:!: ! ! :!!|||..!:!!!.! !!! ! ! ! ! :!!!.! GluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaI 194332 : GAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGA : 194391 94 : lyPheAsnTyrAlaIleLeuLeuLeuArgGluAsnAspIleLeuHisCysIleGluHi : 112 !.!!!!.!:! !! :!!:!!:!!!.!..!!!.!!:||| ! !|||:!: !.! leIleLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGl 194392 : TCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGA : 194448 113 : sIleArgValAspTrpSerIleIleThrLysLysGlnAspGlnGlnValMetLeuLys : 131 .!!:..!..!.!.!::!!! !:!: ! :!!:!!|||!:!||||||||| !!!. uMetGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsn 194449 : GATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAAT : 194505 132 : TyrAlaLysIleGlyArgTyrIleAlaAlaPheCysThrAlaPheLeuGlnGlyGlyV : 151 ! !|||||||||||||||!:!.!!.!!.!!.!.! ! !!.!.!!! ! ! ||||||! CysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyA 194506 : TGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCG : 194565 152 : alLeuCysThrCysLeuAlaLeuGlyAlaPhe<->LysThrThrIleLysAsnGlyAs : 169 .!||| ! !:!! !||| ! !.!. :!!! !! !:!!|||.!.! !|| laLeuProTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGluAspAs 194566 : CTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAA : 194622 170 : nGluThrIleGluIleTyrSerLeuLeuCysProAlaTyrLysPheProValGlnThr : 188 |...||| ! ! !!! !||| !! ! ! ! ||| !!:!!:!! ! nSerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAsp 194623 : CAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGAC : 194679 189 : AsnProThrHisAspIleIleLeuGlyThrGlnLeuLeuSerAlaPheIleAsnSerS : 208 :::|||! !:!!!!:|||! !!!!! !:!!|||:!!|||! !::! !|||! ! !| SerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuS 194680 : TCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGT : 194739 209 : erSerAlaAlaGlyAlaPheSerLeuAlaAlaValPheAlaSerHisAlaLeuGlyGl : 227 ||!!! !..!||| !!:!||||||!.!|||..!.!! !! !|||..!! !||| erThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGlyLe 194740 : CGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTT : 194796 228 : nLeuAsnIle : 230 !!!!.!.:!: uPheGluVal 194797 : GTTCGAAGTG : 194807 vulgar: AfOr46 15 230 . KQ414889.1 194165 194807 + 154 M 37 111 G 2 0 M 107 321 G 0 3 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194166 194807 154 + . gene_id 29 ; sequence AfOr46 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194166 194807 . + . KQ414889.1 exonerate:protein2genome:local exon 194166 194807 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 194166 194807 154 + . alignment_id 29 ; Query AfOr46 ; Align 194166 16 111 ; Align 194277 55 321 ; Align 194601 162 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 185 -> 336 Target range: 300240 -> 301797 186 : ValGlnThrAsnProThrHisAspIleIleLeuGlyThrGlnLeuLeuSerAlaPheI : 205 ..!||||||!:!||||||:!!!!:|||:::... ... .!!:!!|||.!.| ThrGlnThrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetI 300241 : ACACAAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGA : 300298 206 : leAsnSerSerSerAlaAlaGlyAlaPheSerLeuAlaAlaValPheAlaSerHisAl : 224 ||! ! !!:! !.!!.!!!.!|||!:!||||||||||||:!!|||!.!!!!||| leMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIl 300299 : TCATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATAT : 300355 225 : aLeuGlyGlnLeuAsnIleMetValAlaTrpIleAsnGluPheValAsnArgProMet : 243 !! !||||||:!!.!.|||..!:!!||| ! :!:.!.!!:.!.|||.!.||| !! eCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrGly 300356 : CTGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGGGA : 300412 244 : GluSerAsnAsnAspAlaTyrValAsnLysIleSerIleIleValGluHisHisLeuA : 263 |||!.!:!!:!!! ! !! :!! :!: !:!!||||||..! !!|||:!!! GluLysAspAspGlyPro------AspProLeuValValIleValArgAspHisValL 300413 : GAGAAGGACGACGGTCCT------GATCCTTTGGTCGTTATCGTTCGAGATCACGTGA : 300466 264 : rgValLeu{Se} >>>> Target Intron 1 >>>> {r}PheIleThrHisIl : 271 :!||||||{!!} 1110 bp {!} ! ! !.! ysValLeu{Ar}++ ++{g}AspProCysSerPh 300467 : AGGTTTTA{AG}gt.........................ag{A}GACCCGTGTTCCTT : 301600 272 : eGluHisLeuMetAsnProIleCysPheMetGluMetPheLysCysMetValGlyMet : 290 !... ! ! !! !! !:!!||| ::: |||::: ! :!!..! eArg***ProThrPheHisLeuCysAlaValIleLysPheGluSerThrLeuAsnAla 301601 : CCGTTAGCCAACTTTTCATCTCTGCgctgtaattaaatttgaatctACTTTAAATGCA : 301657 291 : CysMetProSerTyrTyrIleLeuAlaGluTrpSerGluHisAsnIleGlnAsnLeuA : 310 .!. ! !! ! !!!! !||||||..!.!. !:!!! !:!! LysPheLeuArgValIle***Phe***GluTrpGlnAsnSerAspThrIleAlaMetL 301658 : AAGTTTTTACGAGTAATTTGATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGT : 301717 311 : laValTyrValMetIleIleIleSerMetThrCysAsnIlePheLeuIleAsnTyrIl : 329 !..!!:! !!! :!::!!! |||.!.|||! !|||||||||:!!.!! !||||| euThrPhePheThrLeuLeuThrSerPheThrPheAsnIlePheIlePheCysTyrIl 301718 : TGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACAT : 301774 330 : eGlyGluIleLeuThrGluGln : 336 |||||||||||||:!!|||||| eGlyGluIleLeuSerGluGln 301775 : CGGCGAGATTCTTTCCGAACAG : 301797 vulgar: AfOr46 185 336 . KQ414889.1 300240 301797 + 144 M 64 192 G 2 0 M 14 42 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300241 301797 144 + . gene_id 30 ; sequence AfOr46 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300241 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300241 300476 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300241 301797 144 + . alignment_id 30 ; Query AfOr46 ; Align 300241 186 192 ; Align 300433 252 42 ; Align 301588 267 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 16 -> 116 Target range: 299686 -> 299989 17 : GluTyrSerIleGlnPheAsnArgTrpIleLeuLysProIleGlyAlaTrpPro<->T : 35 .!.|||!!!:!:|||.!. !!:!|||:!:|||||||||||||||!.!|||! ! HisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpArgLeuL 299687 : CATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGCGATTGC : 299744 36 : hrSerLeuCysThrThrArgAsnGluLysIleIleSerLysIleLeuIleIleLeuCy : 54 !..!! ! !!:!!!:!!:! ||| ! :!!:!!|||! :!!|||!!:! !:!!|| euAspGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMetThrIleCy 299745 : TAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATGACAATATG : 299801 55 : sTrpSerPheSerLeuPheThrLeuIleProGlyLeuLeuHisPheLeuLeuGluLys : 73 |!::||| ! !!!!|||! !:!!:!:|||..! !! !:!!.!!!!!!!!! !:!! sPheSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePhePheAlaGlu 299802 : CTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCTTCGCGGAG : 299858 74 : GluAspIleTyrLeuLysLeuLysThrValGlyProLeuSerHisTyrCysValGlyG : 93 :!!..!|||:!!:!!|||:!!|||..! !!||||||:!!.!! !! ! ! !..! LysSerIleHisValLysValLysValPheGlyProValGlyPheCysLeuSerSerI 299859 : AAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCA : 299918 94 : lyPheAsnTyrAlaIleLeuLeuLeuArgGluAsnAspIleLeuHisCysIleGluHi : 112 ! !!!!.|||..! !|||! !|||!.!! ..!! .!! !!..||||||:!!|| leValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCysIleGlnHi 299919 : TCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGCATCCAACA : 299975 113 : sIleArgValAsp : 116 |:!!..! !||| sValGluArgAsp 299976 : CGTCGAGAGAGAC : 299989 vulgar: AfOr46 16 116 . KQ414889.1 299686 299989 + 133 M 18 54 G 0 3 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299687 299989 133 + . gene_id 31 ; sequence AfOr46 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299687 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299687 299989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299687 299989 133 + . alignment_id 31 ; Query AfOr46 ; Align 299687 17 54 ; Align 299744 35 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 331 -> 389 Target range: 214848 -> 215022 332 : IleLeuThrGluGlnCysLysLysIleGlyGluIleValTyrMetThrAsnTrpTyrG : 351 |||:!! !:!!||||||||||||:!!||||||:!! !||||||! !.!.||||||. IleMetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrA 214849 : ATTATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACC : 214906 352 : luLeuSerAsnLysAspIlePheAsnLeuMetMetIleIleSerArgSerSerValSe : 370 .!||| !!..!!!. ! ! .!! !! !!!::!!|||!!::!!! !|||!:! !|| rgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSe 214907 : GATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATC : 214963 371 : rValAsnMetSerAlaGlyLysLeuIleAsnMetSerValLeuThrPheGlyAsnIle : 389 ||||!!..!.!!!||||||!!.:!!:!!.!.:!!|||:!! !||||||.!!!:!:!! rValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214964 : CGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215020 vulgar: AfOr46 331 389 . KQ414889.1 214848 215022 + 127 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214849 215022 127 + . gene_id 32 ; sequence AfOr46 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214849 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214849 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214849 215022 127 + . alignment_id 32 ; Query AfOr46 ; Align 214849 332 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 335 -> 404 Target range: 261922 -> 262201 336 : GlnCysLysLysIleGlyGluIleValTyrMetThrAsnTrpTyrGluLeuSerAsnL : 355 ||||||..!|||:!!|||!!::!!||||||||||||||||||||| ! ||| !!:!!| GlnCysSerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuProAspL 261923 : CAGTGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACCTGATA : 261980 356 : ysAspIlePheAsnLeuMetMetIleIleSerArg-SerSerValSerValAsnMetS : 374 ||..!|||.!!:!!|||!!::!!||||||:!!|||#!:! !! !..!:!!!:! ! ysSerIleLeuAspLeuIleLeuIleIleAlaArg#AsnArgArgGluIleSerSerA 261981 : AAAGTATCCTTGATTTGATTTTGATCATTGCACGAAAACCGCCGGGAAATTAGTTCAA : 262038 375 : erAlaGlyLysLeuIleAsnMet{S} >>>> Target Intron 1 >>>> {er : 382 :!!.!||| !! !:!!... {|} 71 bp {|| snValGlyLeuHisValArgArg{S}++ +-{er 262039 : ATGTCGGTTTACACGTTCGGCGA{T}gt.........................ac{CA : 262134 383 : }ValLeuThrPheGlyAsnIleValLysSerValPheValTyrLeuAsnMetLeuArg : 401 } !! ! !.!. !.!.:!:||||||!!!!.!|||!.!|||||||||:!!|||||| }SerProLeuIlePheGlnValValLysThrAlaPheAlaTyrLeuAsnLeuLeuArg 262135 : }AGTCCGTTGATATTCCAGGTGGTTAAAACTGCTTTCGCGTATCTGAATCTGTTGCGT : 262190 402 : GlnMetThr : 404 ||||||||| GlnMetThr 262191 : CAAATGACG : 262201 vulgar: AfOr46 335 404 . KQ414889.1 261922 262201 + 126 M 31 93 F 0 1 M 15 45 S 0 1 5 0 2 I 0 67 3 0 2 S 1 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261923 262201 126 + . gene_id 33 ; sequence AfOr46 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 261923 262062 . + . KQ414889.1 exonerate:protein2genome:local exon 261923 262062 . + . insertions 0 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local splice5 262063 262064 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 262063 262133 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 262132 262133 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 262134 262201 . + . KQ414889.1 exonerate:protein2genome:local exon 262134 262201 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 261923 262201 126 + . alignment_id 33 ; Query AfOr46 ; Align 261923 336 93 ; Align 262017 367 45 ; Align 262136 383 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 326 -> 395 Target range: 224469 -> 224676 327 : AsnTyrIleGlyGluIleLeuThrGluGlnCysLysLysIleGlyGluIleValTyrM : 346 :!!|||.!! !..!:!!!!! ! ||||||:::|||||||||::!:!: !|||| HisTyrPheLeuSerLeuPhePheProGlnCysGluLysIleGlyGlnValSerTyrM 224470 : CACTATTTTTTATCGCTATTTTTTCCtcagtgtgaaaaaattggacaAGTGTCGTACA : 224527 347 : etThrAsnTrpTyrGluLeuSerAsnLysAspIlePheAsnLeuMetMetIleIleSe : 365 ||! !:!!||||||..!|||!!!...!!. ! ! !.!. !! !!!::!!||||||:! etIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAl 224528 : TGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGC : 224584 366 : rArgSerSerValSerValAsnMetSerAlaGlyLysLeuIleAsnMetSerValLeu : 384 !! !|||!:! !|||:!!!!.:!!!!!||||||!!.:!!:!!.!.:!!!!!:!! ! aMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThr 224585 : GATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACC : 224641 385 : ThrPheGlyAsnIleValLysSerValPheVal : 395 |||||||||:!!:!! !! !!!:!! !||| ThrPheGlyAspValSerIleThrIleThrVal 224642 : ACTTTCGGTGACGTAAGTATCACAATCACCGTC : 224676 vulgar: AfOr46 326 395 . KQ414889.1 224469 224676 + 125 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224470 224676 125 + . gene_id 34 ; sequence AfOr46 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224470 224676 . + . KQ414889.1 exonerate:protein2genome:local exon 224470 224676 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224470 224676 125 + . alignment_id 34 ; Query AfOr46 ; Align 224470 327 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 299 -> 336 Target range: 283096 -> 283207 300 : GluTrpSerGluHisAsnIleGlnAsnLeuAlaValTyrValMetIleIleIleSerM : 319 |||||||||!!: !:!!:!!|||!.!:!!.!!..!:!! !!||||||:!!||||||| GluTrpSerAspGlyAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 283097 : GAATGGTCTGACGGCGATGTTCAGACTATGACTACGCATTTCATGATCCTTATATCCA : 283154 320 : etThrCysAsnIlePheLeuIleAsnTyrIleGlyGluIleLeuThrGluGln : 336 || ||||||||| !:!! !!|||||||||:!!||||||||||||||| etCysPheAsnIlePheThrValTyrTyrIleGlyLysIleLeuThrGluGln 283155 : TgtgtttcaacatttttacAGTATACTATATCGGGAAAATACTAACTGAACAG : 283207 vulgar: AfOr46 299 336 . KQ414889.1 283096 283207 + 110 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283097 283207 110 + . gene_id 35 ; sequence AfOr46 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283097 283207 . + . KQ414889.1 exonerate:protein2genome:local exon 283097 283207 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283097 283207 110 + . alignment_id 35 ; Query AfOr46 ; Align 283097 300 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr65 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 328 -> 393 Target range: 280282 -> 280548 329 : SerValGlyAsnSerValTyrPheCysThrTrpTyrTyrMetProLysAsnIleSerL : 348 !.!|||||| |||..!|||.!. ! !|||||| !:!!||| !!!.! !:!!: LysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaG 280283 : AAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCAC : 280340 349 : ysAspIleIlePheIleIleMetLysAlaGlnArgProAlaLeuLeuThrAlaGlyAr : 367 !!! !:!:|||.!.|||.!! !:!!.!. ! !! ! !||||||||||||!: lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 280341 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 280397 368 : gIlePheValValAsnMetGluThrTyrLeuSer >>>> Target Intron 1 > : 379 !|||.!!! !:!!::!:!:...!:!!:!! !||| 71 bp sIleIleAspLeuSerLeuSerSerPheCysSer++ 280398 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt...................... : 280435 380 : >>> IleLeuLysThrSerMetSerTyrLeuSerValLeuArgValMet : 393 :!:|||||||||:!!.!.:!!|||||||||:!!||||||..!:!: ++ValLeuLysThrAlaPheAlaTyrLeuSerLeuLeuArgThrLeu 280436 : ...agGTGTTAAAAACGGCATTCGCATATCTGAGCTTATTACGTACGCTT : 280548 vulgar: AfOr65 328 393 . KQ414889.1 280282 280548 + 110 M 50 150 5 0 2 I 0 67 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280283 280548 110 + . gene_id 1 ; sequence AfOr65 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280283 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280283 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280548 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280548 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280283 280548 110 + . alignment_id 1 ; Query AfOr65 ; Align 280283 329 150 ; Align 280504 379 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr65 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 328 -> 393 Target range: 287069 -> 287335 329 : SerValGlyAsnSerValTyrPheCysThrTrpTyrTyrMetProLysAsnIleSerL : 348 !.!|||||| |||..!|||.!. ! !|||||| !:!!||| !!!.! !:!!: LysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaG 287070 : AAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTC : 287127 349 : ysAspIleIlePheIleIleMetLysAlaGlnArgProAlaLeuLeuThrAlaGlyAr : 367 !!! !:!:|||.!.|||.!! !:!!.!. ! !! ! !||||||||||||!: lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 287128 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 287184 368 : gIlePheValValAsnMetGluThrTyrLeuSer >>>> Target Intron 1 > : 379 !|||.!!! !:!!::!:!:...!:!!:!! !||| 71 bp sIleIleAspLeuSerLeuSerSerPheCysSer++ 287185 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt...................... : 287222 380 : >>> IleLeuLysThrSerMetSerTyrLeuSerValLeuArgValMet : 393 :!:||||||:!!:!!.!.:!!|||||||||:!!||||||..!:!: ++ValLeuLysSerAlaPheAlaTyrLeuSerLeuLeuArgThrLeu 287223 : ...agGTGTTGAAATCGGCATTCGCATATCTGAGCTTATTACGTACGCTA : 287335 vulgar: AfOr65 328 393 . KQ414889.1 287069 287335 + 106 M 50 150 5 0 2 I 0 67 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287070 287335 106 + . gene_id 2 ; sequence AfOr65 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 287070 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287070 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287220 287221 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 287220 287290 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287289 287290 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 287291 287335 . + . KQ414889.1 exonerate:protein2genome:local exon 287291 287335 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287070 287335 106 + . alignment_id 2 ; Query AfOr65 ; Align 287070 329 150 ; Align 287291 379 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr65 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 325 -> 396 Target range: 292389 -> 292602 326 : GlnThrGluSerValGlyAsnSerValTyrPheCysThrTrpTyrTyrMetProLysA : 345 ||| !.....!:!!!.!:!!:!! !||| ! !|||||| !!:!!|||!:!. GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 346 : snIleSerLysAspIleIlePheIleIleMetLysAlaGlnArgProAlaLeuLeuTh : 364 ..! :!!:::||||||:!!.!.:!::!! ! !.!!:!!!.!||| ! !||||| rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 365 : rAlaGlyArgIlePheValValAsnMetGluThrTyrLeuSerIleLeuLysThrSer : 383 |||||||!:!|||||||||:!!::::!!.!.|||!:! !:!!:!!! !:!!:!!!.! rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSerLys 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCAAAA : 292561 384 : MetSerTyrLeuSerValLeuArgValMetValAsnSer : 396 :!: !! :!! ! ! !|||:!!:!:! ...||| LeuValLeuIleHis***GluArgIleValAspGlySer 292562 : CTAGTCTTGATACACTAAGAACGTATAGTTGAtggaagc : 292602 vulgar: AfOr65 325 396 . KQ414889.1 292389 292602 + 104 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 292602 104 + . gene_id 3 ; sequence AfOr65 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292390 292602 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292602 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 292602 104 + . alignment_id 3 ; Query AfOr65 ; Align 292390 326 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr65 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 325 -> 384 Target range: 254271 -> 254448 326 : GlnThrGluSerValGlyAsnSerValTyrPheCysThrTrpTyrTyrMetProLysA : 345 ||| ! !!.!||||||.!. !||||||.!. !|||||||||:!!|||:!!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 346 : snIleSerLysAspIleIlePheIleIleMetLysAlaGlnArgProAlaLeuLeuTh : 364 ..! !! ! |||:!!|||.!.||||||! ::!:!!.!. ! !!.! !:!!|| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 365 : rAlaGlyArgIlePheValValAsnMetGluThrTyrLeuSerIleLeuLysThrSer : 383 |||||||:::|||||| :::::::!: ! |||!:! !..!:!! !:!!|||!:! rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 254443 384 : Met : 384 :!: Leu 254444 : CTT : 254448 vulgar: AfOr65 325 384 . KQ414889.1 254271 254448 + 102 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254448 102 + . gene_id 4 ; sequence AfOr65 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254448 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254448 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254448 102 + . alignment_id 4 ; Query AfOr65 ; Align 254272 326 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr64_2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 324 -> 392 Target range: 292395 -> 293251 325 : GluGluIleAlaGlnAlaAlaPheHisSerPheTrpTyrGlnSerArgGlyArgThrA : 344 ...|||||||||!!.|||:!!!:! !!!!! ||||||.!. !! ! !!|||! !| SerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgArgLysA 292396 : AGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGG : 292453 345 : laArgAspLeuIleLeuIleIleCysArgGlyAsnSerSerTyrHisValThrAlaGl : 363 ||||||||:!!:!!|||:!::!!..!! ! !!!. ! !! ! ! :!!|||||||| laArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuThrAlaGl 292454 : CTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGG : 292510 364 : yLysPheValPheMetAsnIlePheThrPheLysGlu >>>> Target Intron : 376 ||||.!. !! !!:!:::::!: !|||||| ! 652 bp yLysIlePheValLeuSerLeuAsnThrPheGlyAla++ 292511 : CAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTgt................... : 292551 377 : 1 >>>> IleLeuLysSerSerThrSerTyrLeuSerValLeuArgValMetMetAs : 392 :!:||||||||||||..! !|||:!!!:!:!!||||||..!:!:! !! ++ValLeuLysSerSerValValTyrMetAsnMetLeuArgThrValThrGl 292552 : ......agGTGCTGAAATCGTCGGTAGTTTACATGAACATGCTACGAACCGTCACTGA : 293249 393 : p : 392 : u 293250 : A : 293251 vulgar: AfOr64_2 324 392 . KQ414889.1 292395 293251 + 110 M 51 153 5 0 2 I 0 648 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292396 293251 110 + . gene_id 1 ; sequence AfOr64_2 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 292396 292548 . + . KQ414889.1 exonerate:protein2genome:local exon 292396 292548 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 292549 292550 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 292549 293200 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 293199 293200 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 293201 293251 . + . KQ414889.1 exonerate:protein2genome:local exon 293201 293251 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292396 293251 110 + . alignment_id 1 ; Query AfOr64_2 ; Align 292396 325 153 ; Align 293201 376 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr173JIP Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 144 -> 211 Target range: 1677 -> 1878 145 : AsnIleLeuAspIleLeuIleProLeuAsnHisThrArgProArgThrValProIleGluIl : 165 :!!|||||||||||||||:!!||| !|||.!.:!!||| ! !.!! ! ! ! ! HisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAl 1678 : CATATTTTGGACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGC : 1738 166 : eTyrTyrPheIleAspGlnGlnLysPhePhePhePhePheGlyMetHisLeuAsnIleIleT : 186 !|||||||||! !|||:!!!!.|||!:! ! ! !:!.!. !! !|||:!! !:!:! aTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValI 1739 : CTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGA : 1801 187 : hrSerPheGlyGlyLeuValTyrIleAlaIleGluThrIleTyrMetGlyMetIleGlnHis : 206 ! ! ! ! ! !! !||||||.!!||| !!!:|||! !|||!!: !:!::!:|||||| leLeuValValPheTyrValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHis 1802 : TCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACAC : 1861 207 : LeuCysGlyLeuLeu : 211 !|||||||||||| GlyCysGlyLeuLeu 1862 : GGCTGCGGATTGTTG : 1878 vulgar: AmOr173JIP 144 211 . KQ414921.1 1677 1878 + 118 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1678 1878 118 + . gene_id 1 ; sequence AmOr173JIP ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1678 1878 . + . KQ414921.1 exonerate:protein2genome:local exon 1678 1878 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1678 1878 118 + . alignment_id 1 ; Query AmOr173JIP ; Align 1678 145 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr64_2 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 387 Query range: 279 -> 392 Target range: 807254 -> 807593 280 : ThrGlyPheGluPheIleLeuAlaLeuSerIleGlyAsnIleValMetThrIleLysT : 299 |||||||||! |||:!::!!|||||||||! !:!!! !||| .!!:!:!:!! ThrGlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgS 807255 : ACAGGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGA : 807312 300 : hrPheIleValMetCysValLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs : 318 :!|||:!!:!!||| ..!||||||||||||||||||||||||||||||||||||:! erPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807313 : GCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 319 : pAlaLeuGluSerArgThrGluGluIleAlaGlnAlaAlaPheHisSerPheTrpTyr : 337 !.!!||||||||||||||||||||||||||||||||||||!:! !!|||.!!|||||| nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 338 : GlnSerArgGlyArgThrAlaArgAspLeuIleLeuIleIleCysArgGlyAsnSerS : 357 !::!!!!.!|||!.!.!!||||||||||||:!!||||||||| !|||||||||||| ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 358 : erTyrHisValThrAlaGlyLysPheValPheMetAsnIlePheThrPheLysGluIl : 376 !!|||!.!:!!|||||||||||||||||| ||||||:!!||||||||||||||||| roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 377 : eLeuLysSerSerThrSerTyrLeuSerValLeuArgValMetMetAsp : 392 |||||||:!!||| !|||||||||||||||:!!!:!|||||||||||| eLeuLysAlaSerGlySerTyrLeuSerValMetLysValMetMetAsp 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: AfOr64_2 279 392 . KQ414940.1 807254 807593 + 387 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807255 807593 387 + . gene_id 1 ; sequence AfOr64_2 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807255 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807255 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807255 807593 387 + . alignment_id 1 ; Query AfOr64_2 ; Align 807255 280 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr65 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 337 Query range: 178 -> 396 Target range: 806514 -> 807596 179 : MetProGluAsnMetTyrPheValIlePheIleValGluTyrSerMetLeuLeuLeuT : 198 :!:||| !.!. :!! !! !:!:!!.:!::!!:!! ! ! :!!!!!!!!! LeuProLeuGlnHisHisValCysValLeuLeuLeuGlnGlyMetHisIlePhePheA 806515 : TTACCGTTGCAGCATCACGTCTGCGTGTTACTGCTGCAAGGGATGCACATTTTCTTCA : 806572 199 : hrSerIleGlyAsnLeuGlySerAspSerValPhePheGlyIleValPheHisLeuCy : 217 .!:!!:!:!.!:!!! !|||!:!|||.!!:!!||||||.!!:!:..!.!.|||||||| snAlaValAlaHisCysGlyAsnAspGlyLeuPhePheSerLeuThrMetHisLeuCy 806573 : ACGCCGTGGCTCACTGCGGCAACGACGGCCTCTTCTTCAGCCTGACGATGCATCTGTG : 806629 218 : sGlyGlnValGluIleLeuLysLeuGluTyrSerLysLeuPheAsnLysAsnGluLys : 236 ||||||| !!||||||||||||:!!.!. :!!:!!:!! !:!! sGlyGlnPheGluIleLeuLysMetAsnLeuAlaGluIleGluPheGluAlaIleAla 806630 : CGGTCAGTTTGAAATTCTGAAGATGAATCTGGCGGAGATCGAGTTCGAGGCGATCGCT : 806686 237 : IleThrGluHisPheValLeuLeuIleLysArgHisIleTyrLeuLeuAsnLeuSerL : 256 ! !:!!!...!!! !:!!|||:!:||||||||| ! ! ||| ! |||!!!! CysArgLysArgIleGlyValLeuValLysArgHisCysLysLeuAlaValLeuThrA 806687 : TGTCGGAAGCGAATCGGCGTTCTCGTGAAACGACACTGCAAACTGGCGGTGTTGACCA : 806746 257 : ysMetLeuAsnGluThrIleGlyThrIleLeuLeuIleGlnLeuPheSerSerCysVa : 275 !. |||.!.:!!!:!.!!.!!! !|||:!!|||:!:||||||.!.! !|||...:! snAspLeuGluGlnSerPheSerMetIleIleLeuValGlnLeuMetMetSerAlaLe 806747 : ACGATCTCGAGCAGAGCTTCAGTATGATTATTCTGGTGCAACTCATGATGAGTGCGTT : 806803 276 : lLeuIleCysThrThr{G} >>>> Target Intron 1 >>>> {ly}GluTyr : 283 !|||||||||..! !{!} 428 bp {.!}||| uLeuIleCysValGlu{A}++ --{la}GluThr 806804 : GCTAATTTGCGTAGAA{G}gt.........................tc{CG}GAGACA : 807255 284 : SerPheGlnPheIleLeuAlaLeuAlaIleGlyAsnIleValLeuThrThrLysIleL : 303 .!!||| |||:!::!!||||||::!! !:!!! !||| !.!! !!:!! !! GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807256 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 304 : euLeuIleMetIleValLeuLeuIleGlnLeuPheAlaTyrSerTyrValGlyGluTy : 322 !!:!!:!:|||:!:..!|||||||||||||||!:! !|||:!!|||!.!|||.!. heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 323 : rLeuLysThrGlnThrGluSerValGlyAsnSerValTyrPheCysThrTrpTyrTyr : 341 |||:!!:!!!:!||||||..!:!!!.!.!.:!!!.!||| !! ! !|||||| ! rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 342 : MetProLysAsnIleSerLysAspIleIlePheIleIleMetLysAlaGlnArgProA : 361 ! ! !:!! !:!!!:!|||:!!:!!!!.|||||| ::!!.!.!. !||| CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 362 : laLeuLeuThrAlaGlyArgIlePheValValAsnMetGluThrTyrLeuSerIleLe : 380 !! !:!!|||||||||!:!.!! !! !:!!|||:!: |||!:! !..!||||| yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 381 : uLysThrSerMetSerTyrLeuSerValLeuArgValMetValAsnSer : 396 ||||.!!||| |||||||||||||||:!!!:!||||||:!!:!!:!! uLysAlaSerGlySerTyrLeuSerValMetLysValMetMetAspAla 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGACGCA : 807596 vulgar: AfOr65 178 396 . KQ414940.1 806514 807596 + 337 M 102 306 S 0 1 5 0 2 I 0 424 3 0 2 S 1 2 M 115 345 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806515 807596 337 + . gene_id 1 ; sequence AfOr65 ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 806515 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806515 806821 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807249 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 807248 807249 . + . intron_id 0 ; splice_site "TC" KQ414940.1 exonerate:protein2genome:local cds 807250 807596 . + . KQ414940.1 exonerate:protein2genome:local exon 807250 807596 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 806515 807596 337 + . alignment_id 1 ; Query AfOr65 ; Align 806515 179 306 ; Align 807252 282 345 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr65 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 324 -> 379 Target range: 117782 -> 117947 325 : ThrGlnThrGluSerValGlyAsnSerValTyrPheCysThrTrpTyrTyrMetProL : 344 ..!|||!:!|||:!!:!!|||..!:!!!.!||| !!|||:!!!:: |||: ValGlnSerGluAlaIleGlyArgAlaAlaTyrThrValProTrpHisTrpTyrProA 117783 : GTTCAGAGCGAAGCGATCGGTCGTGCAGCCTATACGGTGCCTTGGCATTGGTACCCTC : 117840 345 : ysAsnIleSerLysAspIleIlePheIleIleMetLysAlaGlnArgProAlaLeuLe : 363 :: !:!: !!||| ! !! !.!.:!:!!:!!:!:!!.!|||!:!|||!.!! !|| rgCysLeuArgLysProThrAsnMetLeuMetIleArgGlyGlnLysProValArgLe 117841 : GTTGCTTGCGAAAACCAACCAACATGCTGATGATCAGAGGTCAGAAACCGGTTCGTCT : 117897 364 : uThrAlaGlyArgIlePheValValAsnMetGluThrTyrLeuSerIle : 379 ||||||||||!:!||| !!! !:!!::!:!!||||||!:! !|||:!! uThrAlaGlyLysIleValGlyLeuSerLeuGluThrPheAlaSerVal 117898 : GACCGCCGGAAAAATCGTCGGACTCTCTCTGGAAACGTTTGCCTCTGTA : 117947 vulgar: AfOr65 324 379 . KQ414940.1 117782 117947 + 108 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 117783 117947 108 + . gene_id 2 ; sequence AfOr65 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 117783 117947 . + . KQ414940.1 exonerate:protein2genome:local exon 117783 117947 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 117783 117947 108 + . alignment_id 2 ; Query AfOr65 ; Align 117783 325 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr10 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 285 -> 393 Target range: 807257 -> 807581 286 : GlyTyrCysIleIleMetGluTrpGlnGluAsnAsnGlyMetGlyIleIleThrTyrV : 305 |||!:! !.!!:!::!:! !... !!!.:!!..!:!:!.! !:!:! ! ! GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 306 : alLeuValGlnMetThrCysLeuIleGlyAlaPheSerValCysTyrValGlyGlnLe : 324 !!:!!:!!..!:!!|||! |||||| ! !!:! ! !..!|||!.!|||.!. heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 325 : uLeuPheAspGluSerGluAsnValArgGlnAlaTyrAsnThrLeuLysTrpTyrGlu : 343 !||| .....!!!!|||.!.:!! !|||||| ! !! !! ! ||||||... rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 344 : LeuProIleArgLysSerArgSerLeuIleLeuLeuIleIleMetSerAsnTyrProI : 363 ! !! ! !.! !:!!|||..!|||:!!|||:!!||| ! .!!|||! ||| CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 364 : leLysIleThrAlaGlyLysIleIleAspLeuSerLeuValThrPheThrAsnIleIl : 382 !:::|||||||||||||||.!!:!! :!!!:!||| !!||||||! !.!.|||:! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 383 : eLysThrAlaAlaSerTyrMetAsnMetLeuGln : 393 :|||.!!:!!!.!||||||:!!::!:!::!!:!! uLysAlaSerGlySerTyrLeuSerValMetLys 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: AfOr10 285 393 . KQ414940.1 807257 807581 + 151 M 108 324 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807581 151 + . gene_id 1 ; sequence AfOr10 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807581 151 + . alignment_id 1 ; Query AfOr10 ; Align 807258 286 324 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr173JIP Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 145 -> 208 Target range: 32539 -> 32728 146 : IleLeuAspIleLeuIleProLeuAsnHisThrArgProArgThrValProIleGluIle : 165 |||:!!|||:!::!! |||||||||.!.:!!|||! !!.!..!:!!||| !! ! IleIleAspValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGly 32540 : ATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGC : 32597 166 : TyrTyrPheIleAspGlnGlnLysPhePhePhePhePheGlyMetHisLeuAsnIleIle : 185 ! ||||||:!!||||||||||||:::|||... .!!!.!:!!|||:!! ! ! ! GluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThr 32598 : GAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACC : 32657 186 : ThrSerPheGlyGlyLeuValTyrIleAlaIleGluThrIleTyrMetGlyMetIleGln : 205 ..!!!!.!!||| ! !||| !! |||:::::::::|||:::::: ...::: ValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPhe 32658 : GTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTC : 32717 206 : HisLeuCys : 208 |||:!!||| HisValCys 32718 : CACGTTTGC : 32728 vulgar: AmOr173JIP 145 208 . KQ415081.1 32539 32728 + 117 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32540 32728 117 + . gene_id 1 ; sequence AmOr173JIP ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32540 32728 . + . KQ415081.1 exonerate:protein2genome:local exon 32540 32728 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32540 32728 117 + . alignment_id 1 ; Query AmOr173JIP ; Align 32540 146 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr177 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 147 -> 215 Target range: 11304 -> 11508 148 : GluThrThrSerArgThrAsnArgThrAsnTyrPheAspArgIleIleLeuThrGluTyr : 167 .!.|||! !!!! ! !|||..!|||!.. ! !! ! !|||:!!|||||||||||| AsnThrIleThrSerArgAsnGluThrArgAlaAsnGlyLeuIleValLeuThrGluTyr 11305 : AATACGATCACATCTCGAAACGAGACCAGAGCTAATGGCTTGATAGTTTTAACCGAATAC : 11362 168 : PheIleAspArgGluLysTyrSerTyrProIleTyrIleHisLeuAsnValAlaIleLeu : 187 |||:!!||| !|||:!!|||! !||||||||| ! !|||:!! !|||!.!|||!!! PheValAspTyrGluGlnTyrIleTyrProIleThrThrHisValValValGlyIlePhe 11363 : TTCGTTGATTACGAGCAATACATTTATCCAATTACGACCCACGTGGTTGTAGGAATTTTT : 11422 188 : LeuValCysSerMetGluIleGlyThrAspValLeuHisAlaIleIleIleThrHisIle : 207 :!!! !! !:!!!!::!!||||||!:!|||:!!|||:!! !|||.!!!!:! !|||:!! MetGlyPheAlaIleGlnIleGlySerAspLeuLeuAsnMetIlePheMetMetHisVal 11423 : ATGGGTTTTGCTATTCAAATTGGCAGCGATCTTTTGAATATGATATTTATGATGCACGTC : 11482 208 : IleGlyIlePheAspLysIleGly : 215 ! !|||!!:|||||| !|||||| SerGlyMetPheAspAlaIleGly 11483 : AGTGGAATGTTCGACGCAATCGGG : 11508 vulgar: AmOr177 147 215 . KQ415081.1 11304 11508 + 151 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 11305 11508 151 + . gene_id 1 ; sequence AmOr177 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 11305 11508 . + . KQ415081.1 exonerate:protein2genome:local exon 11305 11508 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 11305 11508 151 + . alignment_id 1 ; Query AmOr177 ; Align 11305 148 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr177 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 331 -> 375 Target range: 6721 -> 6853 332 : AlaTyrCysGlyHisTrpTyrSerThrSerAlaLysThrGlnLysLeuLeuLeuPheLeuMe : 352 ::!||||||!.! ! ||||||!!!||||||!.!|||:!!||||||:!!|||||||||||||| SerTyrCysAlaLysTrpTyrThrThrSerValLysSerGlnLysMetLeuLeuPheLeuMe 6722 : AGCTATTGTGCAAAATGGTACACAACCTCGGTAAAATCCCAGAAAATGCTACTATTCCTCAT : 6782 353 : tHisArgPheMetThrProTyrLysPheArgPheLysAsnValValIleValValAspGlnT : 373 ||||||||||||| !|||! !!:!.!.!:!.!.|||||||||:!! !:!!! !:!!:!!! tHisArgPheMetGluProCysArgLeuGlnLeuLysAsnValLeuAlaMetGlyAsnGluM 6783 : GCACAGATTCATGGAACCGTGCAGGCTACAACTGAAAAACGTATTGGCCATGGGCAACGAGA : 6845 374 : hrTyrLeu : 375 !|||:!! etTyrVal 6846 : TGTATGTT : 6853 vulgar: AmOr177 331 375 . KQ415081.1 6721 6853 + 139 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 6722 6853 139 + . gene_id 2 ; sequence AmOr177 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 6722 6853 . + . KQ415081.1 exonerate:protein2genome:local exon 6722 6853 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 6722 6853 139 + . alignment_id 2 ; Query AmOr177 ; Align 6722 332 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr173JIP Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 144 -> 211 Target range: 253 -> 454 145 : AsnIleLeuAspIleLeuIleProLeuAsnHisThrArgProArgThrValProIleGluIleT : 166 :!!|||||||||||||||:!!||| !|||.!.:!!||| ! !.!! ! ! ! ! !| HisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaT 254 : CATATTTTGGACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCT : 317 167 : yrTyrPheIleAspGlnGlnLysPhePhePhePhePheGlyMetHisLeuAsnIleIleThrSe : 187 ||||||||! !|||:!!!!.|||!:! ! ! !:!.!. !! !|||:!! !:!:! ! yrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLe 318 : ATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCT : 380 188 : rPheGlyGlyLeuValTyrIleAlaIleGluThrIleTyrMetGlyMetIleGlnHisLeuCys : 208 ! ! ! ! !! !||||||.!!||| !!!:|||! !|||!!: !:!::!:|||||| !||| uValValPheTyrValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCys 381 : GGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGC : 443 209 : GlyLeuLeu : 211 ||||||||| GlyLeuLeu 444 : GGATTGTTG : 454 vulgar: AmOr173JIP 144 211 . LHQN01023902.1 253 454 + 118 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 254 454 118 + . gene_id 1 ; sequence AmOr173JIP ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 254 454 . + . LHQN01023902.1 exonerate:protein2genome:local exon 254 454 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 254 454 118 + . alignment_id 1 ; Query AmOr173JIP ; Align 254 145 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr173JIP Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 135 -> 211 Target range: 5002 -> 5230 136 : ValPhePheLeuAsnValPheGlyAsnAsnIleLeuAspIleLeuIleProLeuAsnHisTh : 156 :!!|||.!.! ! !|||! !::: |||||||||||||||!!:|||||||||.!.|| LeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluTh 5003 : CTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGAC : 5063 157 : rArgProArgThrValProIleGluIleTyrTyrPheIleAspGlnGlnLysPhePhePheP : 177 |||| !!||| ! !! ! ! ! !|||||||||:!!|||:!!.!.|||!:! !!:!! rArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrL 5064 : GCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACT : 5126 178 : hePheGlyMetHisLeuAsnIleIleThrSerPheGlyGlyLeuValTyrIleAlaIleGlu : 197 !..!!! ! !|||:!! !!:!!:!!..! !.!. ! !! !|||!:! !||| !!!: euIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAsp 5127 : TGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGAT : 5186 198 : ThrIleTyrMetGlyMetIleGlnHisLeuCysGlyLeuLeu : 211 .!!! !|||:!! ! :!:|||||| !|||||||||||| AlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeu 5187 : GCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTG : 5230 vulgar: AmOr173JIP 135 211 . LHQN01025741.1 5002 5230 + 136 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5003 5230 136 + . gene_id 1 ; sequence AmOr173JIP ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5003 5230 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5003 5230 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5003 5230 136 + . alignment_id 1 ; Query AmOr173JIP ; Align 5003 136 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr175JOI Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 144 -> 224 Target range: 5032 -> 5272 145 : IleLeuAspLysIleLeuProLeuAsnGluThrArgLeuLysLysPheProIleLeuThrGl : 165 |||||||||! :!!:!!|||||||||||||||||| !::! !||| ! !! !.!! ! IleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTy 5033 : ATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTA : 5093 166 : uTyrSerIleLeuAspGluLysTyrPheSerLeuThrValIleTyrLeuTyrIleSerLeuL : 186 |||! !:!! !!!:!!:|||||| !! !|||! !||| :!!:!!|||:!! !:!!: rTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValV 5094 : CTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGG : 5156 187 : euLeuIleIleThrIlePheValAlaThrGluSerLeuMetIleLeuTrpLeuGlnHisAla : 206 !!:!!:!!|||:!!:!!||| !||| !!!::!! ! :!:! ! :!!||||||||| alMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAla 5157 : TAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCT : 5216 207 : AlaSerLeuCysGluIleThrArgPhePheValGlnSerAlaThrLeuLysSer : 224 ..!.!!|||! ! |||.!! !!! !!.||||||.!! ! !:!!:!!!:! CysGlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGluAsn 5217 : TGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAAT : 5272 vulgar: AmOr175JOI 144 224 . LHQN01025741.1 5032 5272 + 124 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5033 5272 124 + . gene_id 1 ; sequence AmOr175JOI ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5033 5272 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5033 5272 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5033 5272 124 + . alignment_id 1 ; Query AmOr175JOI ; Align 5033 145 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr173JIP Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 153 -> 210 Target range: 1173 -> 1002 154 : AsnHisThrArgProArgThrValProIleGluIleTyrTyrPheIleAspGlnGlnLysPh : 174 ||| |||! ! ! ! !!||| !:!! !|||||||||:!!|||:!! !:!!!: AsnIleThrProSerLeuProValValValProGlyTyrTyrPheValAspGluValGluTy 1173 : AATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATA : 1113 175 : ePhePhePhePheGlyMetHisLeuAsnIleIleThrSerPheGlyGlyLeuValTyrIleA : 195 !!:!!:!!:!.!! !:!:||| !!.. !! !..!! !.!!! !! !:!!|||||| !| rTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeuIleValValValValTyrCysA 1112 : CTATTATTACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTG : 1050 196 : laIleGluThrIleTyrMetGlyMetIleGlnHisLeuCysGlyLeu : 210 || !!!:|||! !||||||! !:!!:!:|||||| !||||||||| laCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeu 1049 : CCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTG : 1003 vulgar: AmOr173JIP 153 210 . LHQN01027734.1 1173 1002 - 100 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 1003 1173 100 - . gene_id 1 ; sequence AmOr173JIP ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 1003 1173 . - . LHQN01027734.1 exonerate:protein2genome:local exon 1003 1173 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 1003 1173 100 - . alignment_id 1 ; Query AmOr173JIP ; Align 1174 154 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr17 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 297 -> 392 Target range: 4581 -> 4204 298 : GluTrpGluAsnThrAsnThrMetAlaIleValIleTyrIleThrIleGlnIleSerIleIl : 318 |||||| !.!.!:!:!!.!!... !:!! !!! ||||||..!! !! :!!:!!:!!:! GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValVa 4581 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTGT : 4521 319 : ePheCysValPheIleLeuCysTyrIleGlyGlnMetLeuValAspGlu >>>> Target : 335 ! ...|||::::::|||||||||.!!.!.! !|||..!!!::!! 9 lSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4520 : TtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt........... : 4468 336 : Intron 1 >>>> AsnTyrIleValSerGlnAlaSerSerThrValAsnTrpTyrArgL : 350 2 bp !! ! !|||.!!:!!!.! !! !! !..!:!!|||||| !| ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrL 4467 : ..............agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATC : 4333 351 : euSerIleLysAsnMetArgCysLeuIleLeuIleIleAlaMetSerAsnHisProMetLys : 370 || !! !:!!..!!:! ! !|||||||||||||||.!! |||||| !:!::!! euProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGlu 4332 : TGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAA : 4273 371 : LeuLysAlaAlaLysMetMetGluMetSerLeuIleThrPheThrAspIleMetLysValSe : 391 :!!! |||...|||:::......||||||||| !|||||| !|||:!!! :!!..!!: IleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAs 4272 : ATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAA : 4210 392 : rMet : 392 !:!: nLeu 4209 : TCTT : 4205 vulgar: AfOr17 297 392 . LHQN01027980.1 4581 4204 - 118 M 37 111 5 0 2 I 0 88 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4205 4581 118 - . gene_id 1 ; sequence AfOr17 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4581 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4581 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4205 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4205 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4205 4581 118 - . alignment_id 1 ; Query AfOr17 ; Align 4582 298 111 ; Align 4379 335 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 335 Query range: 1 -> 156 Target range: 489 -> 30 2 : SerAspAspLeuValGluIleGluLysLysPheGlySerLeuAsnGluTyrSerIleGlnPheA : 23 !:!||| ! !|||! ! !|||! !!..!. !:!! !!:!!!:||||||:!!|||!::| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpA 489 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGA : 426 24 : snArgTrpIleLeuLysProIleGlyAlaTrpProThrSerLeuCysThrThrArgAsnGluLy : 44 |||||||| :!!||| !||||||.!!|||||| ! ! !:!!:!!!.! !|||!: snArgTrpAlaMetLysSerIleGlyThrTrpProGln------PheSerSerAsnLeuGluAr 425 : ATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAG------TTCTCGTCGAACCTCGAGAG : 369 45 : sIleIleSerLysIleLeuIleIleLeuCysTrpSerPheSerLeuPheThrLeuIleProGly : 65 !! !||||||::!||||||! !:!::!!|||!::!!! ! !||||||:!!:!!|||||| !! gAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCys 368 : AAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGT : 306 66 : LeuLeuHisPheLeuLeuGluLysGluAspIleTyrLeuLysLeuLysThrValGlyProLeuS : 87 ! !||||||.!.:!!|||||||||! ! !.!!||| !|||:!!|||! !:!!|||||||||| SerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyProLeuS 305 : TCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGA : 240 88 : erHisTyrCysValGlyGlyPheAsnTyrAlaIleLeuLeuLeuArgGluAsnAspIleLeuHi : 108 |||||!:: !! !! !.!!!:!|||.!!!!:||||||||||||...!!. !|||! !|| erHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHi 239 : GCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCA : 177 109 : sCysIleGluHisIleArgValAspTrpSerIleIleThrLysLysGlnAspGlnGlnValMet : 129 |! !:!!.!.|||!!:..!..!||||||!!!! ! |||:::|||::: ::::::|||||| sPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMet 176 : CTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATG : 114 130 : LeuLysTyrAlaLysIleGlyArgTyrIleAlaAlaPheCysThrAlaPheLeuGlnGlyGlyV : 151 |||||||||||||||.!!.!!|||||| ||| !||||||.!! !|||:!!!!.||||||: LeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyI 113 : CTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTA : 48 152 : alLeuCysThrCysLeu : 156 !!||| ! !|||:!! leLeuGlyTyrCysVal 47 : TACTTGGATATTGTGTT : 31 vulgar: AfOr46 1 156 . LHQN01027980.1 489 30 - 335 M 34 102 G 2 0 M 119 357 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 31 489 335 - . gene_id 1 ; sequence AfOr46 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 31 489 . - . LHQN01027980.1 exonerate:protein2genome:local exon 31 489 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 31 489 335 - . alignment_id 1 ; Query AfOr46 ; Align 490 2 102 ; Align 388 38 357 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 205 Query range: 335 -> 404 Target range: 4381 -> 4085 336 : GlnCysLysLysIleGlyGluIleValTyrMetThrAsnTrpTyrGluLeuSerAsnLysAs : 356 |||||| !|||:!!||||||:!:||||||||||||:!!|||||| ! ||| !!.!.!:! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 357 : pIlePheAsnLeuMetMetIleIleSerArgSerSerValSerValAsnMetSerAlaGlyL : 377 |||.!!:!!|||!!::!!||||||!!!||||||!:!||| !|||.!.!!:!!!||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 378 : ysLeuIleAsnMetSerValLeuThrPheGlyAsn >>>> Target Intron 1 >>>> : 389 ||:::...:::||||||:!!! !|||||||||:!! 89 bp ysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATgt......................... : 4220 390 : IleValLysSerValPheValTyrLeuAsnMetLeuArgGlnMetThr : 404 :!!||||||!!!! !|||!.!||||||||||||||| !!||||||:!! ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMetSer 4219 : agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAAATGTCC : 4086 vulgar: AfOr46 335 404 . LHQN01027980.1 4381 4085 - 205 M 53 159 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4086 4381 205 - . gene_id 2 ; sequence AfOr46 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4223 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4086 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4086 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4086 4381 205 - . alignment_id 2 ; Query AfOr46 ; Align 4382 336 159 ; Align 4134 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 335 -> 389 Target range: 1990 -> 1822 336 : GlnCysLysLysIleGlyGluIleValTyrMetThrAsnTrpTyrGluLeuSerAsnLysAs : 356 :!! !! |||:!!|||! !! !||||||||||||.!.||||||..!||||||.!.||| GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysTh 1990 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAAC : 1930 357 : pIlePheAsnLeuMetMetIleIleSerArgSerSerValSerValAsnMetSerAlaGlyL : 377 ! !.!!..!!!!:!:|||||||||||||||||||||:!! !:!!!!.!!:!!!||||||| rAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyL 1929 : TGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAA : 1867 378 : ysLeuIle<-><->AsnMetSerValLeuThrPheGlyAsnIle : 389 ||!!!:!! !.. !|||||| !|||||||||:!!:!: ysPheValTyr***ThrSerSerValAlaThrPheGlyAspVal 1866 : AATTCGTATACTGAACATCGTCTGTCGCAACATTTGGCGATGTG : 1823 vulgar: AfOr46 335 389 . LHQN01027980.1 1990 1822 - 113 M 44 132 G 0 6 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1823 1990 113 - . gene_id 3 ; sequence AfOr46 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1823 1990 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1823 1990 . - . insertions 6 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1823 1990 113 - . alignment_id 3 ; Query AfOr46 ; Align 1991 336 132 ; Align 1853 380 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr10 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 340 -> 384 Target range: 4342 -> 4210 341 : TrpTyrGluLeuProIleArgLysSerArgSerLeuIleLeuLeuIleIleMetSerAsnTy : 361 |||||| ! |||||| |||!:!! !! !..!|||||||||:!!|||! ! |||||| TrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnVa 4342 : TGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGT : 4282 362 : rProIleLysIleThrAlaGlyLysIleIleAspLeuSerLeuValThrPheThrAsnIleI : 382 !:!!:!!||||||||||||||||||... :::|||||| !|||||| !:!!:!!! lValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValS 4281 : GGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAA : 4219 383 : leLysThr : 384 !:!!||| erGluThr 4218 : GTGAAACT : 4211 vulgar: AfOr10 340 384 . LHQN01027980.1 4342 4210 - 107 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4211 4342 107 - . gene_id 1 ; sequence AfOr10 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4211 4342 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4211 4342 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4211 4342 107 - . alignment_id 1 ; Query AfOr10 ; Align 4343 341 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr65 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 325 -> 384 Target range: 4381 -> 4204 326 : GlnThrGluSerValGlyAsnSerValTyrPheCysThrTrpTyrTyrMetProLysAsnIl : 346 ||| ! !!.!||||||.!. !||||||.!. !|||||||||:!!|||:!!!..! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 347 : eSerLysAspIleIlePheIleIleMetLysAlaGlnArgProAlaLeuLeuThrAlaGlyA : 367 !! ! |||:!!|||.!.||||||! ::!:!!.!. ! !!.! !:!!|||||||||: gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 368 : rgIlePheValValAsnMetGluThrTyrLeuSerIleLeuLysThrSerMet : 384 ::|||||| :::::::!: ! |||!:! !..!:!! !:!!|||!:!:!: ysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeu 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTT : 4205 vulgar: AfOr65 325 384 . LHQN01027980.1 4381 4204 - 102 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4205 4381 102 - . gene_id 1 ; sequence AfOr65 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4205 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4205 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4205 4381 102 - . alignment_id 1 ; Query AfOr65 ; Align 4382 326 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 178 Query range: 22 -> 161 Target range: 441 -> 24 23 : TyrValThrLysTyrAsnLysTrpValLeuSerCysIleGlyIleTrpProIleValLeuLysA : 44 ||| ! !:!!!::|||::!|||!.!:!!!.! !!||||||! !|||||| !!! !..!| TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerA 441 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGA : 378 45 : snThrAsnLysIleLeuProLysIleValIleGlyIleAsnAsnLeuLeuCysSerPheIleLe : 65 || !.!.!:!! !:!! !!::!|||:!!! !! !||| ! !! ! ! !||| :! snLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIl 377 : ACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGAT : 315 66 : uIleGlnSerAlaLeuHisIleIleTyrGluGluLysAspValLeuLeuArgLeuLysIleLeu : 86 !|||! !!!:!!||||||:!!!!: |||:!! ! ! !!! ! !!:!:!!||||||||| eIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeu 314 : AATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTC : 252 87 : GlyLeuIlePhePheSerLeuIleSerLeuMetLysTyrTrpAlaLeuThrIleHisLysProG : 108 |||! !:!: ! !!!!:!!.!!!!!:!!!!:!..||| !||| !:!:!..::: ! GlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysT 251 : GGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAA : 186 109 : luIleLysTyrCysIleGluGlnValGlnLeuAspTrpLysGlnValGluMetGluAsnAspAr : 129 ||| ! :!!! !:!!.!.!!.:!!:!! !||||||!:! !..! :::... :: hrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLy 185 : CCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaa : 123 130 : gGluLeuMetLeuLysTyrGlyMetLeuGlyArgAsnLeuThrIleTyrSerIleLeuPheMet : 150 :|||:::||||||||||||!.!! !!!.!!||| !! !.!!|||!:!!!! :!!|||!!: sGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIle 122 : agaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATA : 60 151 : TyrIleGlySerIleThrTyrMetSerIleThr : 161 :!! !|||! !:!! !||| !!!:||| HisGlyGlyIleLeuGlyTyrCysValMetThr 59 : CACGGTGGTATACTTGGATATTGTGTTATGACA : 25 vulgar: AfOr56 22 161 . LHQN01027980.1 441 24 - 178 M 139 417 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 25 441 178 - . gene_id 1 ; sequence AfOr56 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 25 441 . - . LHQN01027980.1 exonerate:protein2genome:local exon 25 441 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 25 441 178 - . alignment_id 1 ; Query AfOr56 ; Align 442 23 417 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 257 Query range: 10 -> 165 Target range: 492 -> 30 11 : AlaAsnGlnLysPheTyrSerThrAspTyrGluTyrGlnLysAsnValAsnLeuSerIleGluT : 32 ::!|||.!.||| ! !|||!!: !.!. !:! !:!!! !|||:!!:!!! SerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnT 492 : AGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGT : 429 33 : yrAsnArgTrpLeuLeuLysProMetGlyValTrpProAsnSerTyrThrLeuArgSerLysAs : 53 ::||||||||| !:!!||| !!!:|||..!|||||| ..!!:!:!!! !!.! !:!! rpAsnArgTrpAlaMetLysSerIleGlyThrTrpPro---GlnPheSerSerAsnLeuGluAr 428 : GGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCA---CAGTTCTCGTCGAACCTCGAGAG : 369 54 : pTyrLeuTyrTrpLeuIleAsnIleValCysTyrSerLeuIleSerPheLeuPheIleProCys : 74 !!:!!! ! ! :!!:!!|||:!::!!||||||!!! !||| !|||! !.!.||||||||| gAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCys 368 : AAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGT : 306 75 : ThrLeuTyrLeuPheLeuGluIleGluAspPheTyrGlyLysLeuLysGlnPheGlyProLeuI : 96 :!!|||:!!|||.!.||||||! !! ! !|||||| !|||:!!||| !.!!|||||||||! SerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyProLeuS 305 : TCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGA : 240 97 : lePheCysMetMetAlaPheValLysTyrTyrTyrLeuIleAlaHisLysThrAspIleArgGl : 117 ! !!! :!!.!...!.!!:!!!..||| ! |||:!: !!..:::! ! !|||!.!.! erHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHi 239 : GCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCA : 177 118 : uCysValGluArgIleLysTrpAspTrpLysAsnIleThrTyrAlaLysAspLysGluIleMet : 138 .! !|||.!.!.!!!::!! ||||||!:!!..! ||| ::: ||||||:::||| sPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMet 176 : CTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATG : 114 139 : IleThrTyrAlaAsnPheGlyArgLysLeuValValValCysThrPhePheMetTyrSerGlyP : 160 :!:! !||||||!!.|||.!!||| ! !!.!:!! !!|||.!!.!!|||!!::!!.!!|||. LeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyI 113 : CTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTA : 48 161 : heAlaPheTyrTyrIle : 165 !. ! |||! !:!! leLeuGlyTyrCysVal 47 : TACTTGGATATTGTGTT : 31 vulgar: AfOr20 10 165 . LHQN01027980.1 492 30 - 257 M 34 102 G 1 0 M 120 360 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 31 492 257 - . gene_id 1 ; sequence AfOr20 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 31 492 . - . LHQN01027980.1 exonerate:protein2genome:local exon 31 492 . - . insertions 0 ; deletions 1 LHQN01027980.1 exonerate:protein2genome:local similarity 31 492 257 - . alignment_id 1 ; Query AfOr20 ; Align 493 11 102 ; Align 391 46 360 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 508 Query range: 1 -> 265 Target range: 1118 -> 326 2 : SerAspAspLeuValGluIleGluLysLysPheGlySerLeuAsnGluTyrSerIleGlnPh : 22 !:!||| ! !|||! ! !|||! !!..!. !:!! !!:!!!:||||||:!!|||!: AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTr 1118 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTG : 1058 23 : eAsnArgTrpIleLeuLysProIleGlyAlaTrpProThrSerLeuCysThrThrArgAsnG : 43 :||||||||| :!!||| !||||||||||||||| !||| :!!:!!!.! !| pAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSer------SerSerAsnLeuG 1057 : GAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCC------TCGTCGAATCTCG : 1001 44 : luLysIleIleSerLysIleLeuIleIleLeuCysTrpSerPheSerLeuPheThrLeuIle : 63 ||!:!|||||||||::!||||||! !:!::!!|||!::!!! !|||||||||:!!||| luArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIle 1000 : AGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATC : 941 64 : ProGlyLeuLeuHisPheLeuLeuGluLysGluAspIleTyrLeuLysLeuLysThrValGl : 84 ||| !!! !|||||| ! :!!|||||||||||| !.!!||| !|||:!!|||! !:!!|| ProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGl 940 : CCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGG : 878 85 : yProLeuSerHisTyrCysValGlyGlyPheAsnTyrAlaIleLeuLeuLeuArgGluAsnA : 105 |||||||||||||!:: !! !! !.!!!:!|||.!!!!:||||||||||||...!!. yProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysT 877 : TCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAA : 815 106 : spIleLeuHisCysIleGluHisIleArgValAspTrpSerIleIleThrLysLysGlnAsp : 125 !|||! !|||! !.!!.!.|||!!:..!..!||||||!!!! ! ! :::|||::: hrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLys 814 : CCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaag : 755 126 : GlnGlnValMetLeuLysTyrAlaLysIleGlyArgTyrIleAlaAlaPheCysThrAlaPh : 146 :::::::::||||||||||||||||||.!!.!!|||||| ||| !! !|||||| !|| LysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePh 754 : aaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTT : 692 147 : eLeuGlnGlyGlyValLeuCysThrCysLeuAlaLeuGlyAlaPheLysThrThrIleLysA : 167 |:!!!!.||||||:!!||| ! !|||:!! ! !!.! ! !! !! !..!:!! ! eIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValV 691 : CATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGG : 629 168 : snGlyAsnGluThrIleGluIleTyrSerLeuLeuCysProAlaTyrLys<-><->PhePro : 185 !||||||||||||!!: :!: ! !|||! !! ||| !|||||| .!!||| alGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuPro 628 : TTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCA : 569 186 : ValGlnThrAsnProThrHisAspIleIleLeuGlyThrGlnLeuLeuSerAlaPheIleAs : 206 |||.!.|||||| !!! !:!!!!:|||:!!||| !:!!|||!!!||||||!.!|||||| ValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAl 568 : GTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGC : 506 207 : nSerSerSerAlaAlaGlyAlaPheSerLeuAlaAlaValPheAlaSerHisAlaLeuGlyG : 227 !:!!!!|||||| !.!!!.!.!.||||||.!!::!!.!.!..!!|||||||||! !|||| aAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyG 505 : GAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCC : 443 228 : lnLeuAsnIleMetValAlaTrpIleAsnGluPheValAsnArgProMetGluSerAsnAsn : 247 |||||..!:!::!::!! !! !|||.!.!!:||||||!:! ! !!! ...!!!...!!. lnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLys 442 : AGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAG : 383 248 : AspAlaTyrValAsnLysIleSerIleIleValGluHisHisLeuArgValLeu : 265 |||! !:!! !!:!!:!!||| !!! !||||||||| ! ||||||||||||||| AspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeu 382 : GACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG : 327 vulgar: AfOr46 1 265 . LHQN01028641.1 1118 326 - 508 M 35 105 G 2 0 M 145 435 G 0 6 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 327 1118 508 - . gene_id 1 ; sequence AfOr46 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 327 1118 . - . LHQN01028641.1 exonerate:protein2genome:local exon 327 1118 . - . insertions 6 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local similarity 327 1118 508 - . alignment_id 1 ; Query AfOr46 ; Align 1119 2 105 ; Align 1014 39 435 ; Align 573 184 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 320 Query range: 10 -> 283 Target range: 1121 -> 296 11 : AlaAsnGlnLysPheTyrSerThrAspTyrGluTyrGlnLysAsnValAsnLeuSerIleGl : 31 ::!|||.!.||| ! !|||!!: !.!. !:! !:!!! !|||:!!:! SerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGl 1121 : AGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCA : 1061 32 : uTyrAsnArgTrpLeuLeuLysProMetGlyValTrpProAsnSerTyrThrLeuArgSerL : 52 !!::||||||||| !:!!||| !!!:|||!.!||||||.!.||| :!!! !!.! !: nTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSer---SerSerAsnLeuG 1060 : GTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCC---TCGTCGAATCTCG : 1001 53 : ysAspTyrLeuTyrTrpLeuIleAsnIleValCysTyrSerLeuIleSerPheLeuPheIle : 72 !! !:!!! ! ! :!!:!:|||:!::!!||||||!!! !:!! !||| !.!.||| luArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIle 1000 : AGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATC : 941 73 : ProCysThrLeuTyrLeuPheLeuGluIleGluAspPheTyrGlyLysLeuLysGlnPheGl : 93 ||||||:!!|||:!!:!!.!.||||||! !||| !|||||| !|||:!!||| !.!!|| ProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGl 940 : CCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGG : 878 94 : yProLeuIlePheCysMetMetAlaPheValLysTyrTyrTyrLeuIleAlaHisLysThrA : 114 |||||||! ! !!! :!!.!...!.!!:!!!..||| ! |||:!: !!..:::! ! yProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysT 877 : TCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAA : 815 115 : spIleArgGluCysValGluArgIleLysTrpAspTrpLysAsnIleThrTyrAlaLysAsp : 134 !||||||.!.! ! !!.!.!.!!!::!! ||||||!:!!..! ! ::: hrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLys 814 : CCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaag : 755 135 : LysGluIleMetIleThrTyrAlaAsnPheGlyArgLysLeuValValValCysThrPhePh : 155 ||||||||||||:!:! !||||||!!.|||.!!||| ! !!.!:!! !||||||.!!|| LysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePh 754 : aaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTT : 692 156 : eMetTyrSerGlyPheAlaPheTyrTyrIleAlaIleProIleSerValGlyArgValLysT : 176 |!!::!!.!!|||.!. ! |||! !:!! !! ! !!.!!!!!..! ! !||| !. eIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValV 691 : CATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGG : 629 177 : hrAspAsnLeuThrPheIleProLeuValPheProPheSerArgPhe<-><->IleValAsp : 194 .!! ||| !|||.!.||| !! !|||.!.|||!!. !!! !!:! :!!:!! alGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuPro 628 : TTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCA : 569 195 : ThrArgTyrSerProThrAsnGluIleValPheSerIleGlnLeuMetAlaGlyAlaLeuMe : 215 ..! ! !:! !!! !||||||||||||.!!! ! !|||!!!:!::!!||| !:!! ValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAl 568 : GTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGC : 506 216 : tHisGlyIleThrSerAlaAlaCysSerLeuValAlaThrPheAlaValHisAlaCysGlyG : 236 !:!! !! !.!!! !::!!.! ||||||..!::!.!!.!..!! !||||||! !|||| aAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyG 505 : GAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCC : 443 237 : lnMetGlnValLeuMetAsnTrpLeuGlnHisLeuIle<->AspGlyArgLeuAspMetAsp : 255 ||:!! |||:!!||| ! !:!!:!! !!!!!:!: |||!.!|||! ! ! ! lnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLys 442 : AGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAG : 383 256 : GluArgLeuAspGlyArgIleAlaAspValIleCysGlnHisValArgValLeuLysPheLe : 276 !!: !! ! !! !..!||| !! :!!:!: :!!|||:!!||||||||||||! :! AspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeuLys***Va 382 : GACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTGAAGTAAGT : 320 277 : uAlaLeuThrGluLysThrLeu : 283 !..!||| !!!: !! !||| lCysLeuLeuAspLeuIleLeu 319 : ATGTTTGTTGGATTTGATTTTG : 297 vulgar: AfOr20 10 283 . LHQN01028641.1 1121 296 - 320 M 36 108 G 1 0 M 144 432 G 0 6 M 57 171 G 0 3 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 297 1121 320 - . gene_id 1 ; sequence AfOr20 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 297 1121 . - . LHQN01028641.1 exonerate:protein2genome:local exon 297 1121 . - . insertions 9 ; deletions 1 LHQN01028641.1 exonerate:protein2genome:local similarity 297 1121 320 - . alignment_id 1 ; Query AfOr20 ; Align 1122 11 108 ; Align 1014 48 432 ; Align 576 192 171 ; Align 402 249 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 253 Query range: 22 -> 285 Target range: 1070 -> 278 23 : TyrValThrLysTyrAsnLysTrpValLeuSerCysIleGlyIleTrpProIleValLeuLy : 43 ||| ! !:!!!::|||::!|||!.!:!!!.! !!|||||| !|||||| !! !.. TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSerSe 1070 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCGTC : 1010 44 : sAsnThrAsnLysIleLeuProLysIleValIleGlyIleAsnAsnLeuLeuCysSerPheI : 64 !||| !.!.!:!|||:!! !!::!|||:!!! !! !||| ! !! ! ! !|||! rAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheT 1009 : GAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCA : 947 65 : leLeuIleGlnSerAlaLeuHisIleIleTyrGluGluLysAspValLeuLeuArgLeuLys : 84 :!!|||! !!!:!!||||||:!!!!: |||:!!:!! ! !!! ! !!:!:!!||| hrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLys 946 : CGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAA : 887 85 : IleLeuGlyLeuIlePhePheSerLeuIleSerLeuMetLysTyrTrpAlaLeuThrIleHi : 105 |||||||||! !:!: ! !!!!:!!.!!!!!:!!!!:!..||| !||| !:!:!. IleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuAr 886 : ATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCG : 824 106 : sLysProGluIleLysTyrCysIleGluGlnValGlnLeuAspTrpLysGlnValGluMetG : 126 .::: ! |||::::!!! !.!!.!.!!.:!!:!! !||||||!:! !..! : gArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgL 823 : ACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaa : 761 127 : luAsnAspArgGluLeuMetLeuLysTyrGlyMetLeuGlyArgAsnLeuThrIleTyrSer : 146 ::... :::|||:::||||||||||||!.!! !!!.!!||| !! !.!!|||! !!!! ysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCys 760 : aggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGT : 701 147 : IleLeuPheMetTyrIleGlySerIleThrTyrMetSerIleThrGlnTyrAlaMetGlyLe : 167 ! :!!|||!!::!! !|||! !:!! !||| !!!:||| !!:!.!!! ! !:! ThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetVa 700 : ACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGT : 638 168 : uGlnIleAsnGluHisGlnSerAsnGlnThrIleArgValLeuIleTyrProThrTyrGly< : 188 ! :!: !! !:!!:!!!!! ..!! !:!:||||||||| ! |||! !||| ! lValValValGlyAsnGluThr---MetIleLeuArgValLeuProLeuProMetTyrLysG 637 : TGTCGTGGTTGGAAACGAGACT---ATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAG : 578 189 : -><->TyrAsnIleGlnLysSerProIleTyrGluIleIleTyrGlyIleGlnPheMetCys : 206 ! :!!.!.! !!:! !!!!: !!||||||:!! ! ! !||||||:!:! ! lyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSer 577 : GGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCC : 518 207 : GlyTyrValValAspThrIleThrSerGlyAlaCysGlyLeuAlaAlaLeuPheValThrHi : 227 |||!:!:!!!.!:!!|||! !.!!! !.!!!.! .!!|||.!!::! !.!...!:!!|| GlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHi 517 : GGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACA : 455 228 : sAlaCysGlyGlnIleAspIleIleThrSerArgLeuAspAspIleValAlaGlyGlnPheT : 248 ||||! !||||||:!:! !:!::!!! !! ! !:!!!!:|||.!!|||::!! ! ! sAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgA 454 : CGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGAC : 392 249 : yrAsnLysAsnLeuSerProAsnIleArgLeuMetAlaIleIleLysHisHisIleArgIle : 268 !!.. !!!. !..!! ! ! !..!:!! !.!!|||:!::!! ! |||:!:|||:!: rgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgVal 391 : GCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTG : 332 269 : LeuLysPheSerAlaValValGluThrValLeuGlnGluValPhePheLeu : 285 ||||||! !..!:!!:!!!!: !:!!|||! ! !! ! ! |||||| LeuLys***ValCysLeuLeuAspLeuIleLeuProMetGlyValPheLeu 331 : TTGAAGTAAGTATGTTTGTTGGATTTGATTTTGCCGATGGGTGTGTTTCTC : 279 vulgar: AfOr56 22 285 . LHQN01028641.1 1070 278 - 253 M 152 456 G 1 0 M 12 36 G 0 6 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 279 1070 253 - . gene_id 1 ; sequence AfOr56 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 279 1070 . - . LHQN01028641.1 exonerate:protein2genome:local exon 279 1070 . - . insertions 6 ; deletions 1 LHQN01028641.1 exonerate:protein2genome:local similarity 279 1070 253 - . alignment_id 1 ; Query AfOr56 ; Align 1071 23 456 ; Align 615 176 36 ; Align 573 188 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr173JIP Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 134 Query range: 135 -> 211 Target range: 5660 -> 5432 136 : ValPhePheLeuAsnValPheGlyAsnAsnIleLeuAspIleLeuIleProLeuAsnHisTh : 156 :!!|||.!.! ! !|||! !::: |||||||||||||||!!:|||||||||.!.|| LeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluTh 5660 : CTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGAC : 5600 157 : rArgProArgThrValProIleGluIleTyrTyrPheIleAspGlnGlnLysPhePhePheP : 177 |||| !!||| ! !! ! ! ! !|||||||||:!!|||:!!.!.|||!:! !!:!! rArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrL 5599 : GCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACT : 5537 178 : hePheGlyMetHisLeuAsnIleIleThrSerPheGlyGlyLeuValTyrIleAlaIleGlu : 197 !..!!! ! !|||:!! !!:!!:!!..! !.!. ! !! !|||!:! !||| !!!: euIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAsp 5536 : TGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGAT : 5477 198 : ThrIleTyrMetGlyMetIleGlnHisLeuCysGlyLeuLeu : 211 .!!! !|||:!! ! :!:|||||| !|||||||||||| AlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeu 5476 : GCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTG : 5433 vulgar: AmOr173JIP 135 211 . LHQN01028732.1 5660 5432 - 134 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5433 5660 134 - . gene_id 1 ; sequence AmOr173JIP ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5433 5660 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5433 5660 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5433 5660 134 - . alignment_id 1 ; Query AmOr173JIP ; Align 5661 136 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr175JOI Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 144 -> 224 Target range: 5630 -> 5390 145 : IleLeuAspLysIleLeuProLeuAsnGluThrArgLeuLysLysPheProIleLeuThrGl : 165 |||||||||! :!!:!!|||||||||||||||||| !::! !||| ! !! !.!! ! IleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTy 5630 : ATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTA : 5570 166 : uTyrSerIleLeuAspGluLysTyrPheSerLeuThrValIleTyrLeuTyrIleSerLeuL : 186 |||! !:!! !!!:!!:|||||| !! !|||! !||| :!!:!!|||:!! !:!!: rTyrPheValAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValV 5569 : CTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGG : 5507 187 : euLeuIleIleThrIlePheValAlaThrGluSerLeuMetIleLeuTrpLeuGlnHisAla : 206 !!:!!:!!|||:!!:!!||| !||| !!!::!! ! :!:! ! :!!||||||||| alMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAla 5506 : TAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCT : 5447 207 : AlaSerLeuCysGluIleThrArgPhePheValGlnSerAlaThrLeuLysSer : 224 ..!.!!|||! ! |||.!! !!! !!.||||||.!! ! !:!!:!!!:! CysGlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGluAsn 5446 : TGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAAT : 5391 vulgar: AmOr175JOI 144 224 . LHQN01028732.1 5630 5390 - 122 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5391 5630 122 - . gene_id 1 ; sequence AmOr175JOI ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5391 5630 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5391 5630 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5391 5630 122 - . alignment_id 1 ; Query AmOr175JOI ; Align 5631 145 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr20 Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 249 Query range: 10 -> 165 Target range: 378 -> 840 11 : AlaAsnGlnLysPheTyrSerThrAspTyrGluTyrGlnLysAsnValAsnLeuSerIleGluT : 32 ::!|||.!.||| ! !|||!!: !.!. !:! !:!!! !|||:!!:!!! SerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnT 379 : AGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGT : 442 33 : yrAsnArgTrpLeuLeuLysProMetGlyValTrpProAsnSerTyrThrLeuArgSerLysAs : 53 ::||||||||| !:!!||| !!!:|||..!|||||| ..!!:!:!!! !!.! !:!! rpAsnArgTrpAlaMetLysSerIleGlyThrTrpPro---GlnPheSerSerAsnLeuGluAr 443 : GGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCA---CAGTTCTCGTCGAACCTCGAGAG : 502 54 : pTyrLeuTyrTrpLeuIleAsnIleValCysTyrSerLeuIleSerPheLeuPheIleProCys : 74 !!:!!! ! ! :!!:!!|||:!::!!||||||!!! !||| !|||! !.!.||||||||| gAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCys 503 : AAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGT : 565 75 : ThrLeuTyrLeuPheLeuGluIleGluAspPheTyrGlyLysLeuLysGlnPheGlyProLeuI : 96 :!!|||:!!|||.!.||||||! !! ! !|||||| !|||:!!||| !.!!||| !!|||! SerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuS 566 : TCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGA : 631 97 : lePheCysMetMetAlaPheValLysTyrTyrTyrLeuIleAlaHisLysThrAspIleArgGl : 117 ! !!! :!!.!...!.!!:!!!..||| ! |||:!: !!..:::! ! !|||!.!.! erHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHi 632 : GCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCA : 694 118 : uCysValGluArgIleLysTrpAspTrpLysAsnIleThrTyrAlaLysAspLysGluIleMet : 138 .! !|||.!.!.!!!::!! ||||||!:!!..! ||| ::: ||||||:::||| sPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMet 695 : CTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATG : 757 139 : IleThrTyrAlaAsnPheGlyArgLysLeuValValValCysThrPhePheMetTyrSerGlyP : 160 :!:! !||||||!!.|||.!!||| ! !!.!:!! !!|||.!!.!!|||!!::!!.!!|||. LeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyI 758 : TTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACACGGTGGTA : 823 161 : heAlaPheTyrTyrIle : 165 !. ! |||! !:!! leLeuGlyTyrCysVal 824 : TACTTGGATATTGTGTT : 840 vulgar: AfOr20 10 165 . LHQN01028951.1 378 840 + 249 M 34 102 G 1 0 M 120 360 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 379 840 249 + . gene_id 1 ; sequence AfOr20 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 379 840 . + . LHQN01028951.1 exonerate:protein2genome:local exon 379 840 . + . insertions 0 ; deletions 1 LHQN01028951.1 exonerate:protein2genome:local similarity 379 840 249 + . alignment_id 1 ; Query AfOr20 ; Align 379 11 102 ; Align 481 46 360 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr56 Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 179 Query range: 22 -> 161 Target range: 429 -> 846 23 : TyrValThrLysTyrAsnLysTrpValLeuSerCysIleGlyIleTrpProIleValLeuLysA : 44 ||| ! !:!!!::|||::!|||!.!:!!!.! !!||||||! !|||||| !!! !..!| TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerA 430 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGA : 493 45 : snThrAsnLysIleLeuProLysIleValIleGlyIleAsnAsnLeuLeuCysSerPheIleLe : 65 || !.!.!:!! !:!! !!::!|||:!!! !! !||| ! !! ! ! !||| :! snLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIl 494 : ACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGAT : 556 66 : uIleGlnSerAlaLeuHisIleIleTyrGluGluLysAspValLeuLeuArgLeuLysIleLeu : 86 !|||! !!!:!!||||||:!!!!: |||:!! ! ! !!! ! !!:!:!!||||||||| eIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeu 557 : AATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTC : 619 87 : GlyLeuIlePhePheSerLeuIleSerLeuMetLysTyrTrpAlaLeuThrIleHisLysProG : 108 |||! !:!: ! !!!!:!!.!!!!!:!!!!:!..||| !||| !:!:!..::: ! GlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysT 620 : GGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAA : 685 109 : luIleLysTyrCysIleGluGlnValGlnLeuAspTrpLysGlnValGluMetGluAsnAspAr : 129 ||| ! :!!! !:!!.!.!!.:!!:!! !||||||!:! !..! :::... :: hrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLy 686 : CCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaa : 748 130 : gGluLeuMetLeuLysTyrGlyMetLeuGlyArgAsnLeuThrIleTyrSerIleLeuPheMet : 150 :|||:::||||||||||||!.!! !!!.!!||| !! !.!!|||!:!!!! :!!|||!!: sGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIle 749 : agaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATA : 811 151 : TyrIleGlySerIleThrTyrMetSerIleThr : 161 :!! !|||! !:!! !||| !!!:||| HisGlyGlyIleLeuGlyTyrCysValMetThr 812 : CACGGTGGTATACTTGGATATTGTGTTATGACA : 846 vulgar: AfOr56 22 161 . LHQN01028951.1 429 846 + 179 M 139 417 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 430 846 179 + . gene_id 1 ; sequence AfOr56 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 430 846 . + . LHQN01028951.1 exonerate:protein2genome:local exon 430 846 . + . insertions 0 ; deletions 0 LHQN01028951.1 exonerate:protein2genome:local similarity 430 846 179 + . alignment_id 1 ; Query AfOr56 ; Align 430 23 417 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 327 Query range: 1 -> 156 Target range: 381 -> 840 2 : SerAspAspLeuValGluIleGluLysLysPheGlySerLeuAsnGluTyrSerIleGlnPheA : 23 !:!||| ! !|||! ! !|||! !!..!. !:!! !!:!!!:||||||:!!|||!::| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpA 382 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGA : 445 24 : snArgTrpIleLeuLysProIleGlyAlaTrpProThrSerLeuCysThrThrArgAsnGluLy : 44 |||||||| :!!||| !||||||.!!|||||| ! ! !:!!:!!!.! !|||!: snArgTrpAlaMetLysSerIleGlyThrTrpProGln------PheSerSerAsnLeuGluAr 446 : ATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAG------TTCTCGTCGAACCTCGAGAG : 502 45 : sIleIleSerLysIleLeuIleIleLeuCysTrpSerPheSerLeuPheThrLeuIleProGly : 65 !! !||||||::!||||||! !:!::!!|||!::!!! ! !||||||:!!:!!|||||| !! gAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCys 503 : AAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGT : 565 66 : LeuLeuHisPheLeuLeuGluLysGluAspIleTyrLeuLysLeuLysThrValGlyProLeuS : 87 ! !||||||.!.:!!|||||||||! ! !.!!||| !|||:!!|||! !:!!||| !!|||| SerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuS 566 : TCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGA : 631 88 : erHisTyrCysValGlyGlyPheAsnTyrAlaIleLeuLeuLeuArgGluAsnAspIleLeuHi : 108 |||||!:: !! !! !.!!!:!|||.!!!!:||||||||||||...!!. !|||! !|| erHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHi 632 : GCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCA : 694 109 : sCysIleGluHisIleArgValAspTrpSerIleIleThrLysLysGlnAspGlnGlnValMet : 129 |! !:!!.!.|||!!:..!..!||||||!!!! ! |||:::|||::: ::::::|||||| sPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMet 695 : CTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATG : 757 130 : LeuLysTyrAlaLysIleGlyArgTyrIleAlaAlaPheCysThrAlaPheLeuGlnGlyGlyV : 151 |||||||||||||||.!!.!!|||||| ||| !||||||.!! !|||:!!!!.||||||: LeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyI 758 : TTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACACGGTGGTA : 823 152 : alLeuCysThrCysLeu : 156 !!||| ! !|||:!! leLeuGlyTyrCysVal 824 : TACTTGGATATTGTGTT : 840 vulgar: AfOr46 1 156 . LHQN01028951.1 381 840 + 327 M 34 102 G 2 0 M 119 357 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 382 840 327 + . gene_id 1 ; sequence AfOr46 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 382 840 . + . LHQN01028951.1 exonerate:protein2genome:local exon 382 840 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 382 840 327 + . alignment_id 1 ; Query AfOr46 ; Align 382 2 102 ; Align 484 38 357 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 334 -> 379 Target range: 212 -> 77 335 : GluGlnCysLysLysIleGlyGluIleValTyrMetThrAsnTrpTyrGluLeuSerAsnLysA : 356 |||:!! !! |||:!!|||! !! !||||||||||||.!.||||||..!||||||.!.||| GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 357 : spIlePheAsnLeuMetMetIleIleSerArgSerSerValSerValAsnMetSerAlaGlyLy : 377 ! !.!!..!!!!:!:|||||||||||||||||||||:!! !:!!!!.!!:!!!|||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 378 : sLeuIle : 379 |!!!:!! sPheVal 85 : ATTCGTA : 78 vulgar: AfOr46 334 379 . LHQN01029187.1 212 77 - 117 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 78 212 117 - . gene_id 1 ; sequence AfOr46 ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 78 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 78 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 78 212 117 - . alignment_id 1 ; Query AfOr46 ; Align 213 335 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr46 Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 335 -> 389 Target range: 112 -> 280 336 : GlnCysLysLysIleGlyGluIleValTyrMetThrAsnTrpTyrGluLeuSerAsnLysAspI : 357 :!! !! |||:!!|||! !! !||||||||||||.!.||||||..!||||||.!.||| ! GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrA 113 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTG : 176 358 : lePheAsnLeuMetMetIleIleSerArgSerSerValSerValAsnMetSerAlaGlyLysLe : 378 !.!!..!|||:!:|||||||||||||||||||||:!! !:!!!!.!!:!!!|||||||||!! laLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPh 177 : CTCTCGGTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATT : 239 379 : uIle<-><->AsnMetSerValLeuThrPheGlyAsnIle : 389 !:!! !.. !|||||| !|||||||||:!!:!: eValTyr***ThrSerSerValAlaThrPheGlyAspVal 240 : CGTATACTGAACATCGTCTGTCGCAACATTTGGCGATGTG : 280 vulgar: AfOr46 335 389 . LHQN01048470.1 112 280 + 117 M 44 132 G 0 6 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 113 280 117 + . gene_id 1 ; sequence AfOr46 ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 113 280 . + . LHQN01048470.1 exonerate:protein2genome:local exon 113 280 . + . insertions 6 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 113 280 117 + . alignment_id 1 ; Query AfOr46 ; Align 113 336 132 ; Align 251 380 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr69 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 152 Query range: 231 -> 312 Target range: 888 -> 648 232 : TyrArgLeuAlaThrThrIleAsnGluGlnPheLysMetValIlePheValGlnPheThrValS : 253 !:!|||!!!||| !! !||||||! !:!!|||!..!!:..!!!: !..!|||||| !|||! PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValT 888 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGA : 825 254 : erThrLeuThrIleCysValAsnLeuTyrIleLeuMetGlyThrGlnIleThrPheGluArgIl : 274 !!|||:!!|||!!:||| !!||||||!:! !|||! !|||:!!:!: !:!..!!:!:! hrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysVal---TyrSerGlnVa 824 : CCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGGTG---TATTCGCAAGT : 765 275 : eMetGlnLeuAlaIleTyrSerSerCysMetLeuThrGlnIleTyrIlePheCysTrpTyrGly : 295 !:!: !||| ! !:!! ! ! !!:!!!!!.!!||||||!:! !! !|||||||||||| lLeuAlaLeuIleProPheMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGly 764 : TTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGA : 702 296 : AsnGluValLysLeuLysSerLeuAspIleSerAspMetIlePheLysLeu : 312 ||||||..!|||:!!||| !! !||| !!!!|||.!.:::|||...::: AsnGluThrLysValLysValArgAspGlnThrAspPheLeuPheSerIle 701 : AACGAGACCAAAGTGAAGGTACGTGATCAAACAGACTTCttattctcaatt : 649 vulgar: AfOr69 231 312 . LHQN01050085.1 888 648 - 152 M 38 114 G 1 0 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 649 888 152 - . gene_id 1 ; sequence AfOr69 ; gene_orientation . LHQN01050085.1 exonerate:protein2genome:local cds 649 888 . - . LHQN01050085.1 exonerate:protein2genome:local exon 649 888 . - . insertions 0 ; deletions 1 LHQN01050085.1 exonerate:protein2genome:local similarity 649 888 152 - . alignment_id 1 ; Query AfOr69 ; Align 889 232 114 ; Align 775 271 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AmOr177 Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 161 -> 215 Target range: 547 -> 709 162 : IleIleLeuThrGluTyrPheIleAspArgGluLysTyrSerTyrProIleTyrIleHisLeuA : 183 :!!:!!! !||||||||||||:!!||| !:!! ! |||! !|||! !||| |||||| !! LeuValArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAlaT 548 : CTCGTTCGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCGA : 611 184 : snValAlaIleLeuLeuValCysSerMetGluIleGlyThrAspValLeuHisAlaIleIleIl : 204 .!:!!||||||:!!! ! ! !!!|||:!!|||.!!!:!|||:::|||::: |||...:: hrIleAlaIleMetCysSerValThrMetGlnIleSerSerAspIleLeuAsnAsnIlePheMe 612 : CTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaataacatatttat : 674 205 : eThrHisIleIleGlyIlePheAspLysIleGly : 215 :! !||||||! !|||!!:|||!!: !|||||| tMetHisIleSerGlyMetPheGluValIleGly 675 : GATGCACATCAGTGGAATGTTCGAGGTAATTGGG : 709 vulgar: AmOr177 161 215 . LHQN01050134.1 547 709 + 126 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 548 709 126 + . gene_id 1 ; sequence AmOr177 ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 548 709 . + . LHQN01050134.1 exonerate:protein2genome:local exon 548 709 . + . insertions 0 ; deletions 0 LHQN01050134.1 exonerate:protein2genome:local similarity 548 709 126 + . alignment_id 1 ; Query AmOr177 ; Align 548 162 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 217 Query range: 170 -> 391 Target range: 1307337 -> 1305891 171 : ValGlyLeuSerProTyrPheGluIleLeuPheThrIleGlnIleLeuCysValTy : 189 :!! ! !|||||| !||||||||| !|||..! !|||:!::!!...||| IleThrAlaSerProLeuPheGluIleAlaPheValCysGlnLeuIleAlaValAl 1307337 : ATCACAGCATCTCCTCTCTTCGAAATCGCTTTCGTTTGTCAACTGATTGCGGTTGC : 1307283 190 : rHisValGlyValCysTyrIleCysPheAspAsnLeuLeuCysIleValAsnLeuH : 208 !|||!.!!.!! ! ! !!!!.|||...! !! ! ! !..!! !|||| aPheValAlaAlaSerThrSerGlyLeuAspGlySerCysMetThrThrIleLeuH 1307282 : ATTTGTGGCCGCCTCAACCTCAGGCTTGGATGGATCATGTATGACCACGATTTTAC : 1307226 209 : isValAlaGlyGlnPheArgIleLeuGlnHisArgLeuArgSerLeuSerSerAla : 226 |||||:!!|||||||||!:!:!!:!!... !!:!!!!!!.!:!!.!! !! ! isValSerGlyGlnPheLysLeuIleSerThrTrpValSerLysMetGlyValGlu 1307225 : ACGTATCTGGACAATTCAAATTAATCAGTACGTGGGTCAGCAAAATGGGAGTAGAA : 1307172 227 : GluProGlyAspArgArgAspAlaArgLysLeuTyrAlaLysLeuLysSerCysVa : 245 ! !! ! ! ! ! ! !!:!!||||||||| ! !.! ! |||! !.!|||:! ThrAsnValLysProValTyrSerArgLysLeuGluValAspLeuIleLysCysIl 1307171 : ACAAATGTCAAACCTGTTTATTCGCGAAAATTAGAAGTGGACCTGATCAAATGCAT : 1307115 246 : lLeuHisHisGlnAlaLeuThr{Ly} >>>> Target Intron 1 >>>> { : 253 !! !||||||||| !:!!! !{!!} 169 bp { eArgHisHisGlnArgMetIle{As}++ ++{ 1307114 : TCGTCATCACCAACGAATGATA{AA}gt.........................ag{ : 1306920 254 : s}TyrCysLysGlnLeuGluAsnIlePheThrIleIleValLeuGlyGlnValLeu : 271 .} !!....:::...|||:::|||||| !||||||!!!! !|||:!!||| n}ValValAsnAspValAsnAsnLeuPheThrProIleValPheValGlnLeuLeu 1306919 : C}GTGGTGAATGatgtgaataatttatttactccCATCGTTTTCGTACAACTTCTT : 1306868 272 : PheLeuAlaValValIleCysLeuValGlyPheGlnLeuPheLeuMetAspThrPr : 290 !!.!:!!|||||||||||| !|||||| !:!!||| !! |||.!! ThrSerGlyIleValIleCysLeuSerGlyPheAlaValPheAspAsnAspAla-- 1306867 : ACAAGCGGAATAGTAATTTGTTTAAGTGGATTCGCGGTTTTCGATAACGACGCC-- : 1306811 291 : oAlaSerArgLysValSerLeuValLeuAsnPheAlaGlyThrLeuCysGlnLeuL : 309 !!!! !! :!!!.!! !|||! ! !!!!.:!!..!! !! !! ||||||| -ArgThrAspIleLeuLysTyrValSerTyrLeuSerSerIleTrpLeuGlnLeuL 1306810 : -CGTACCGATATTCTGAAATACGTATCTTATTTGTCCTCGATTTGGTTGCAACTTT : 1306757 310 : euMetPheThrTyrSerCysAspAspLeuIleGlnGluSerValLysValGlyAsn : 327 ||:!:!:: !! !! !!!!: !|||:!!|||||||||:!!:!!:!!|||:!! euLeuTrpCysLeuProGlyGluIleLeuValGlnGluSerLeuGluIleGlyHis 1306756 : TGTTATGGTGTTTGCCCGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGACAC : 1306703 328 : AlaIlePheSerGlyProTrpAlaSerLeuProMetAspGluValGlyArgValLe : 346 !.!:!!!:! !!:!:!!||| ! !!.!.:!! !! !:!!! ValValTyr------------LeuAsnValProTrpTyrAsnLeuProProIleTy 1306702 : GTAGTCTAC------------TTAAATGTACCATGGTACAATTTGCCGCCAATTTA : 1306658 347 : uArgLysAsnLeuValIleValIleMetArgSerHisArgValCysCysLeuThrA : 365 !!:!!:!!!.||| !!!::!!|||:!:|||:!!!!.!:! !||| !!:!!|||| rGlnArgLysLeuCysMetMetIleLeuArgAlaGlnGlnTyrCysSerIleThrA 1306657 : CCAGAGAAAACTTTGCATGATGATCCTTAGGGCACAACAATATTGCAGCATCACGG : 1306601 366 : laGlyLysPhePheProValSerLeuGluThrSerThrAla >>>> Target I : 379 || !! !||| !!:!!|||:!!.!.|||! !|||::! 629 laLeuThrPheArgThrLeuSerIleHisThrLeuThrSer++ 1306600 : CATTAACGTTTCGAACGTTGTCTATTCACACGTTAACGAGCgt............. : 1306557 380 : ntron 2 >>>> IleLeuSerThrAlaMetSerTyrPheThrLeuLeuLys : 391 bp :!!!!!!:!|||||| ||||||||||||||||||::! ++ValPheAsnThrAlaAlaSerTyrPheThrLeuLeuArg 1306556 : ............agGTATTCAATACAGCCGCTTCATATTTCACTTTGCTGCGA : 1305892 vulgar: AfOr84 170 391 . KQ414608.1 1307337 1305891 - 217 M 82 246 S 0 2 5 0 2 I 0 165 3 0 2 S 1 1 M 36 108 G 1 0 M 40 120 G 4 0 M 44 132 5 0 2 I 0 625 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1305892 1307337 217 - . gene_id 1 ; sequence AfOr84 ; gene_orientation + KQ414608.1 exonerate:protein2genome:local cds 1307090 1307337 . - . KQ414608.1 exonerate:protein2genome:local exon 1307090 1307337 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1307088 1307089 . - . intron_id 1 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1306921 1307089 . - . intron_id 1 KQ414608.1 exonerate:protein2genome:local splice3 1306921 1306922 . - . intron_id 0 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1306560 1306920 . - . KQ414608.1 exonerate:protein2genome:local exon 1306560 1306920 . - . insertions 0 ; deletions 5 KQ414608.1 exonerate:protein2genome:local splice5 1306558 1306559 . - . intron_id 2 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1305931 1306559 . - . intron_id 2 KQ414608.1 exonerate:protein2genome:local splice3 1305931 1305932 . - . intron_id 1 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1305892 1305930 . - . KQ414608.1 exonerate:protein2genome:local exon 1305892 1305930 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1305892 1307337 217 - . alignment_id 1 ; Query AfOr84 ; Align 1307338 171 246 ; Align 1306920 254 108 ; Align 1306812 291 120 ; Align 1306692 335 132 ; Align 1305931 379 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr83 Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 260 -> 400 Target range: 1306928 -> 1305894 261 : LeuIleAspTyrTyrGlnAsnLeuGluAsnValTyrThrMetIleThrLeuGlyGl : 279 ||| !..! .!.::::::...|||::::::||| |||..!!!!! !|| LeuTyrSerValValAsnAspValAsnAsnLeuPheThrProIleValPheValGl 1306928 : TTATACAGCGTGGTGAATGatgtgaataatttatttactccCATCGTTTTCGTACA : 1306874 280 : nValLeuValPheGlyValLeuIleCysLeuPheGlyTyrGlnValPheValAlaT : 298 |:!!|||..! !|||:!!:!!||||||||| !|||!:! !|||||| nLeuLeuThrSerGlyIleValIleCysLeuSerGlyPheAlaValPhe------- 1306873 : ACTTCTTACAAGCGGAATAGTAATTTGTTTAAGTGGATTCGCGGTTTTC------- : 1306823 299 : hrSerSerThrAlaArgArgPheIlePheValPheLeuLeuSerGlySerMetPhe : 316 ..!!:! !||||||! ! !|||.!. !!:!:!!! !! ! !||| !.!! --AspAsnAspAlaArgThrAspIleLeuLysTyrValSerTyrLeuSerSerIle 1306822 : --GATAACGACGCCCGTACCGATATTCTGAAATACGTATCTTATTTGTCCTCGATT : 1306772 317 : LeuLeuPheMetPheThrTyrSerCysAsnGlyValIleGluGlnSerAspAsnVa : 335 ! !||| :!:!!. !!::!!!! !|||! !||| ..!!!:!:!:! TrpLeuGlnLeuLeuLeuTrpCysLeuProGlyGluIleLeuValGlnGluSerLe 1306771 : TGGTTGCAACTTTTGTTATGGTGTTTGCCCGGTGAAATTCTCGTTCAAGAGAGTTT : 1306715 336 : lAlaValGlyAlaTyrSerAlaLeuTrpThrIleLeuProMetAspLysPheGlyA : 354 !! !:!!||| !!.!:!!!:: !! !:!!||| ! !!!!.!!. !! uGluIleGly------HisValValTyrLeuAsnValProTrpTyrAsnLeuProP 1306714 : AGAAATAGGA------CACGTAGTCTACTTAAATGTACCATGGTACAATTTGCCGC : 1306664 355 : rgMetLeuArgAsnAspLeuIleMetValMetLysArgSerArgArgValCysCys : 372 !!!:! !!:!!.. ! ||| !|||:!!!!: |||:!!!:!!:! !||| !! roIleTyrGlnArgLysLeuCysMetMetIleLeuArgAlaGlnGlnTyrCysSer 1306663 : CAATTTACCAGAGAAAACTTTGCATGATGATCCTTAGGGCACAACAATATTGCAGC : 1306610 373 : LeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrLys >>>> T : 389 :!!|||||| !||| !!:!!|||:!!.!.|||! |||!.. IleThrAlaLeuThrPheArgThrLeuSerIleHisThrLeuThrSer++ 1306609 : ATCACGGCATTAACGTTTCGAACGTTGTCTATTCACACGTTAACGAGCgt...... : 1306557 390 : arget Intron 1 >>>> IleLeuSerThrAlaValSerTyrPheThrLeuLe : 400 629 bp :!!!!!!:!||||||!.!||||||||||||||||| ++ValPheAsnThrAlaAlaSerTyrPheThrLeuLe 1306556 : ...................agGTATTCAATACAGCCGCTTCATATTTCACTTTGCT : 1305897 401 : u : 400 | u 1305896 : G : 1305895 vulgar: AfOr83 260 400 . KQ414608.1 1306928 1305894 - 100 M 35 105 G 3 0 M 40 120 G 2 0 M 48 144 5 0 2 I 0 625 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1305895 1306928 100 - . gene_id 1 ; sequence AfOr83 ; gene_orientation + KQ414608.1 exonerate:protein2genome:local cds 1306560 1306928 . - . KQ414608.1 exonerate:protein2genome:local exon 1306560 1306928 . - . insertions 0 ; deletions 5 KQ414608.1 exonerate:protein2genome:local splice5 1306558 1306559 . - . intron_id 1 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1305931 1306559 . - . intron_id 1 KQ414608.1 exonerate:protein2genome:local splice3 1305931 1305932 . - . intron_id 0 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1305895 1305930 . - . KQ414608.1 exonerate:protein2genome:local exon 1305895 1305930 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1305895 1306928 100 - . alignment_id 1 ; Query AfOr83 ; Align 1306929 261 105 ; Align 1306824 299 120 ; Align 1306704 341 144 ; Align 1305931 389 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414615.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold33, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 253 -> 381 Target range: 2576492 -> 2577016 254 : IleGluTyrCysLysArgLeuGluAsnIlePheThrValMetValLeuGlyGlnVa : 272 .!!..!!:!||| ! !..:::|||... ||| :!!|||:!!||| !|||.. PheArgPheCysAspAsnMetGluLysAsnPheHisLeuMetLeuLeuLeuGlnTh 2576493 : TTTAGGTTTTGTGATAAtatggaaaagaattttcaccTAATGCTCCTTTTACAAAC : 2576547 273 : lMetPheUnkAlaValValIleCysLeuValGlyPheGlnLeuPheLeu >>>> : 289 !||| !...::!:!!:!!||||||!!!||||||||||||:!!! ! rMetThrSerSerLeuMetIleCysPheValGlyPheGlnValSerThr++ 2576548 : TATGACCAGTAGTCTTATGATTTGTTTCGTCGGATTTCAAGTTTCGACCgt..... : 2576600 290 : Target Intron 1 >>>> AlaGluThrProAlaSerLysArgAlaSerLeuV : 300 86 bp .!! !||| ! !|||||| ....... ++ThrLeuThrGluGlnSerLysValIleLysPheA 2576601 : ....................agACACTAACAGAACAATctaaagtaattaaatttg : 2576717 301 : alValAsnLeuGlyGlyThrPhePheGlnLeuLeuIlePheThrTyrSerCysAsp : 318 .. !:!!||| !! !|||...||||||||||||:::||| !!:! !! ! ||| laSerHisLeuIleValThrLeuPheGlnLeuLeuLeuPheCysPheProGlyAsp 2576718 : cttcTCACTTAATCGTGAcgctttttcaattattactcTTTTGTTTCCCTGGGGAT : 2576771 319 : AsnLeuIleArgGln >>>> Target Intron 2 >>>> SerValAsnVal : 327 ! |||||||||||| 69 bp ||| !!!:!:!! MetLeuIleArgGln++ ++SerPheSerIle 2576772 : ATGCTAATCCGACAGgt.........................agAGTTTCAGTATA : 2576867 328 : GlyAsnAlaValPheSerGlyProTrpValAsnLeuProMetAsnLysAlaGlyAl : 346 .!!!..|||!.!!:!||| !! !||| !.!.|||||| .! SerThrAlaAlaTyrSerIleGlnTrpCysGlnLeuPro---------------Th 2576868 : AGTACAGCTGCATATTCAATACAGTGGTGTCAACTGCCA---------------AC : 2576909 347 : aLeuValArgLysAsnLeuIleIleValIleMetArgSerGlnLysValCysCysL : 365 !!!!:!!!:! ! .!.:!! !!!::!!|||:!:|||||||||!:! ! !!! !: rPheLeuLysAspGluValCysMetIleIleLeuArgSerGlnArgSerSerTyrI 2576910 : TTTTCTTAAAGACGAAGTATGCATGATTATACTACGTTCTCAAAGATCTAGCTACA : 2576966 366 : euThrAlaGlyLysPhePheProValSerLeuGluThrSerThrAlaVal : 381 !!||||||||||||.!.!:! !::: ||||||... ||||||||| leThrAlaGlyLysIleTyrValMetHisLeuGluAsnPheThrAlaVal 2576967 : TTACTGCGGGAAAGATATATGTGAtgcatttggaaaatttcaccgcggta : 2577016 vulgar: AfOr75P 253 381 . KQ414615.1 2576492 2577016 + 148 M 35 105 5 0 2 I 0 82 3 0 2 M 35 105 5 0 2 I 0 65 3 0 2 M 17 51 G 5 0 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414615.1 exonerate:protein2genome:local gene 2576493 2577016 148 + . gene_id 1 ; sequence AfOr75P ; gene_orientation + KQ414615.1 exonerate:protein2genome:local cds 2576493 2576597 . + . KQ414615.1 exonerate:protein2genome:local exon 2576493 2576597 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2576598 2576599 . + . intron_id 1 ; splice_site "GT" KQ414615.1 exonerate:protein2genome:local intron 2576598 2576683 . + . intron_id 1 KQ414615.1 exonerate:protein2genome:local splice3 2576682 2576683 . + . intron_id 0 ; splice_site "AG" KQ414615.1 exonerate:protein2genome:local cds 2576684 2576788 . + . KQ414615.1 exonerate:protein2genome:local exon 2576684 2576788 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2576789 2576790 . + . intron_id 2 ; splice_site "GT" KQ414615.1 exonerate:protein2genome:local intron 2576789 2576857 . + . intron_id 2 KQ414615.1 exonerate:protein2genome:local splice3 2576856 2576857 . + . intron_id 1 ; splice_site "AG" KQ414615.1 exonerate:protein2genome:local cds 2576858 2577016 . + . KQ414615.1 exonerate:protein2genome:local exon 2576858 2577016 . + . insertions 0 ; deletions 5 KQ414615.1 exonerate:protein2genome:local similarity 2576493 2577016 148 + . alignment_id 1 ; Query AfOr75P ; Align 2576493 254 105 ; Align 2576684 289 105 ; Align 2576858 324 51 ; Align 2576909 346 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr94 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 170 -> 232 Target range: 204059 -> 204245 171 : LeuSerMetSerProTyrPheGluIleThrTyrValIleGlnAlaLeuCysLeuTyrG : 190 :::||| !!!|||||||||||||||! !!:!:!!:!!||| ! ! !||| IleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAlaThrLeuValL 204060 : ataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGT : 204117 191 : lnValGlyIleCysTyrLeuCysValAspAsnMetPheCysIleMetCysLeuHisLe : 209 !:!!!.!:!!||||||:!! !!|||||||||.!.||| ! |||:!! !||||||:! euMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeuIleLeuHisIl 204118 : TAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATAT : 204174 210 : uAlaSerGlnPheArgIleLeuGlnTyrArgLeuValAsnLeuSerSerValGluAsn : 228 !..!.!!|||!!...!! !|||!:: ||||||!.!|||:!!!.! !:!!|||!.! eCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysHisLeuGluThr 204175 : TTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAACATTTGGAAACT : 204231 229 : LysGluGluVal : 232 !!:...:!! PheAspArgIle 204232 : TTTGATCGTATT : 204245 vulgar: AfOr94 170 232 . KQ414617.1 204059 204245 + 127 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204060 204245 127 + . gene_id 1 ; sequence AfOr94 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204060 204245 . + . KQ414617.1 exonerate:protein2genome:local exon 204060 204245 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204060 204245 127 + . alignment_id 1 ; Query AfOr94 ; Align 204060 171 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 160 -> 231 Target range: 204029 -> 204242 161 : LeuProPheAsnLeuTrpValAspPheProValGlyLeuSerProTyrPheGluIleL : 180 !!!||| ! ::: ::: :::..! !!!!|||||||||||||||: PheProValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleM 204030 : TTTCCGGTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTGAGATAA : 204087 181 : euPheThrIleGlnIleLeuCysValTyrHisValGlyValCysTyrIleCysPheAs : 199 !!||| !:!!|||!!: ! !:!! :!!!.!:!!||||||||| !! !!|| etPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAs 204088 : TGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGA : 204144 200 : pAsnLeuLeuCysIleValAsnLeuHisValAlaGlyGlnPheArgIleLeuGlnHis : 218 ||||!!!!!! ! |||:!!! !||||||:!!..!||||||!!...!! !|||!:: pAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThr 204145 : TAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACA : 204201 219 : ArgLeuArgSerLeuSerSerAlaGluProGlyAspArg : 231 |||||| !!:!:!!!.! ! !||| !! !|||||| ArgLeuAlaAsnIleLysHisLeuGluThrPheAspArg 204202 : CGACTTGCAAACATAAAACATTTGGAAACTTTTGATCGT : 204242 vulgar: AfOr84 160 231 . KQ414617.1 204029 204242 + 119 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204030 204242 119 + . gene_id 1 ; sequence AfOr84 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204030 204242 . + . KQ414617.1 exonerate:protein2genome:local exon 204030 204242 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204030 204242 119 + . alignment_id 1 ; Query AfOr84 ; Align 204030 161 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr83 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 171 -> 224 Target range: 204059 -> 204218 172 : ValThrArgThrProTyrTyrGluIleIlePhePheIleGlnGlyValSerLeuTyrT : 191 ::::!!..!|||||||||!:!||||||!!:|||.!!:!!||| !!.!!!!||| ! IleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAlaThrLeuValL 204060 : ataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGT : 204117 192 : yrIleGlyIleSerTyrPheCysPheAspAsnIlePheCysIleMetAlaValHisLe : 210 !!:!.!:!!!!!|||.!! !! !!||||||.!!||| ! |||:!! !:!!|||:! euMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeuIleLeuHisIl 204118 : TAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATAT : 204174 211 : uAlaGlyGlnPheArgIleLeuArgTyrArgLeuThrLysLeu : 224 !..!||||||!!...!! !|||||| ||||||.!!!!.:!! eCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIle 204175 : TTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATA : 204218 vulgar: AfOr83 171 224 . KQ414617.1 204059 204218 + 111 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204060 204218 111 + . gene_id 1 ; sequence AfOr83 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204060 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 204060 204218 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204060 204218 111 + . alignment_id 1 ; Query AfOr83 ; Align 204060 172 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr95 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 155 -> 223 Target range: 204023 -> 204227 156 : ArgAlaLeuProPheAsnIleTrpIleAspLeuProLeuThrIleThrProTyrTyrG : 175 !:! !!!!||| ! ::: ::::!! !|||||||||!:!| LysLeuPheProValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheG 204024 : AAGCTTTTTCCGGTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTG : 204081 176 : luIleThrPheValLeuGluValIleSerLeuTyrHisIleGlyValSerTyrPheCy : 194 |||||! !|||:!!|||:!!:!! !!!!||| !!:!.!:!!!!!|||.!! ! luIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGl 204082 : AGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGG : 204138 195 : sPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGlnPheGlnValLeu : 213 ! !!|||||||||!!! ! |||:!!! !||||||:!!..!||||||!!.:!! !||| yValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeu 204139 : TGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTT : 204195 214 : GlnHisArgIleSerAsnIleThrAspLeu : 223 !:: |||:!!:!!||||||! ! !!||| ArgThrArgLeuAlaAsnIleLysHisLeu 204196 : CGTACACGACTTGCAAACATAAAACATTTG : 204227 vulgar: AfOr95 155 223 . KQ414617.1 204023 204227 + 114 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204024 204227 114 + . gene_id 1 ; sequence AfOr95 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204024 204227 . + . KQ414617.1 exonerate:protein2genome:local exon 204024 204227 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204024 204227 114 + . alignment_id 1 ; Query AfOr95 ; Align 204024 156 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_1 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 159 -> 227 Target range: 204023 -> 204227 160 : ArgValLeuProPheAsnMetTrpValAsnLeuProLeuSerMetThrProTyrPheG : 179 !:!:!!!!!||| ! ::: :::||| ||||||||||||| LysLeuPheProValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheG 204024 : AAGCTTTTTCCGGTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTG : 204081 180 : luIleThrPheThrLeuGlnThrLeuSerLeuTyrGlnIleGlyValSerTyrPheCy : 198 |||||! !||| !||||||! ! !!!!||| !!!:!.!:!!!!!|||.!! ! luIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGl 204082 : AGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGG : 204138 199 : sPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGlnPheLysValLeu : 217 ! !!|||||||||!!! ! |||:!!! !||||||:!!..!||||||!!.:!! !||| yValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeu 204139 : TGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTT : 204195 218 : GlnTyrArgIleSerAsnIleAlaAspLeu : 227 !:: |||:!!:!!|||||| ! !!||| ArgThrArgLeuAlaAsnIleLysHisLeu 204196 : CGTACACGACTTGCAAACATAAAACATTTG : 204227 vulgar: AfOr91_1 159 227 . KQ414617.1 204023 204227 + 122 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204024 204227 122 + . gene_id 1 ; sequence AfOr91_1 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204024 204227 . + . KQ414617.1 exonerate:protein2genome:local exon 204024 204227 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204024 204227 122 + . alignment_id 1 ; Query AfOr91_1 ; Align 204024 160 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr80 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 171 -> 224 Target range: 204059 -> 204218 172 : IleSerValThrProTyrTyrGluIleLeuPheAlaAlaGluValLeuSerIleTyrC : 191 ||||||! !|||||||||!:!||||||:!!||| ! !:!!:!! !!!!:!! ! IleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAlaThrLeuValL 204060 : ataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGT : 204117 192 : ysValAlaLeuCysTyrPheCysPheAspAsnValPheCysIleLeuAlaValHisLe : 210 :!!||||||||||||.!! !! !!|||||| !!||| ! |||||| !:!!|||:! euMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeuIleLeuHisIl 204118 : TAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATAT : 204174 211 : uAlaGlyGlnPheAsnIleLeuLysHisLysPheAlaLysLeu : 224 !..!||||||!!..!.! !|||::: ::!.!!|||!!.:!! eCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIle 204175 : TTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATA : 204218 vulgar: AfOr80 171 224 . KQ414617.1 204059 204218 + 119 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204060 204218 119 + . gene_id 1 ; sequence AfOr80 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204060 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 204060 204218 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204060 204218 119 + . alignment_id 1 ; Query AfOr80 ; Align 204060 172 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 158 -> 223 Target range: 204023 -> 204218 159 : ArgAlaLeuProPheAsnLeuTrpIleAspPheProValGlyLeuSerProTyrPheG : 178 !:! !!!!||| ! ::: ::: :::..! !!!!|||||||||| LysLeuPheProValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheG 204024 : AAGCTTTTTCCGGTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTG : 204081 179 : luLeuLeuPheIleIleGlnIleLeuCysValTyrHisValAlaThrCysTyrIleCy : 197 ||:!!:!!|||:!!:!!|||!!: ! !:!! :!!||| !||||||||| ! luIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGl 204082 : AGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGG : 204138 198 : sPheAspAsnLeuLeuCysIleValAsnLeuHisValAlaGlyGlnPheArgIleLeu : 216 ! !!||||||!!!!!! ! |||:!!! !||||||:!!..!||||||!!...!! !||| yValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeu 204139 : TGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTT : 204195 217 : GlnHisArgLeuLysAsnLeu : 223 !:: |||||| !|||:!! ArgThrArgLeuAlaAsnIle 204196 : CGTACACGACTTGCAAACATA : 204218 vulgar: AfOr75P 158 223 . KQ414617.1 204023 204218 + 118 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204024 204218 118 + . gene_id 1 ; sequence AfOr75P ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204024 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 204024 204218 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204024 204218 118 + . alignment_id 1 ; Query AfOr75P ; Align 204024 159 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr70 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 773 Query range: 2 -> 304 Target range: 3163849 -> 3165184 3 : ValGlnThrLeuGlnTrpThrArgPheLeuLeuSerValCysGlyCysValProPr : 21 :!!.....!|||:!!! ||| !.!!||||||!.!:!!! !|||||| !! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 3163850 : ATGAGTGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTACCTGCC : 3163904 22 : oThrSerTrpLysSerSerPheLysLysSerLeuTyrAsnIleTyrThrLeuValI : 40 | !||||||! !!!! !!|||:!!!:!|||||||||||||||||| !:!! !! oHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheT 3163905 : CCATTCGTGGACAACGCCGTTCGAAAGGTCTTTGTACAATATCTACGGGGTGTTCT : 3163961 41 : leTrpLeuLeuIleLeuSerLeuValSerThrGlnIleLeuAspIleIleIleAsn : 58 !! !||||||:!! !||||||!.! !:!!||||||||||||:!! |||||| yrLeuLeuLeuLeuSerSerLeuAlaLeuSerGlnIleLeuAspValAlaIleAsn 3163962 : ACTTGCTTCTTCTAAGCAGCCTCGCCCTCTCGCAAATATTAGACGTAGCGATCAAC : 3164015 59 : ValLysAsnLysAsnGluPheIleGluAsnPheTyrIleThrLeuValValPheVa : 77 |||:!!!:!:!!:!!!!:||| :::|||||| |||||| !|||||||||:! ValGluSerGlnAspAspPheSerAspAsnPheSerIleThrAlaValValPheLe 3164016 : GTGGAGAGCCAGGATGACTTCagtgacaatttttctatcaccGCTGTGGTGTTTCT : 3164072 78 : lThrSerCysLysMetThrIleIleLeuArgTyrArgLysAsnIleLeuSerLeuI : 96 !|||!!!! !|||:!::!!|||:!!|||! ! ||| !|||.!!:!!! !|||| uThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuI 3164073 : CACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGA : 3164129 97 : leAspAspLeuGlnHisGluProPheSerProIleThrHisGluGluAsnGluIle : 114 ||||| ||||||:!!:!!||||||||||||:!: ! ||||||||||||||| leAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIle 3164130 : TCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATT : 3164183 115 : ArgThrLysPheAsnLysMetAsn{Gl} >>>> Target Intron 1 >>>> : 123 |||.!!||||||.!.|||!!:!.!{||} 107 bp ArgAlaLysPheGluLysIleThr{Gl}++ + 3164184 : AGAGCGAAATTCGAGAAGATCACC{GA}gt.........................a : 3164317 124 : {u}ArgThrSerIleCysTyrThrIleLeuValLeuValSerAlaThrTrpIleP : 141 {|} !!!.!!!!||| !!||| !! !|||:!!|||:!!!!!||| !||||||! +{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleCysAlaPheTrpIleT 3164318 : g{A}TGGAACACGATTGGCTACTGGAGTTTACTATTAATTTGTGCGTTCTGGATAT : 3164371 142 : heValArgSerPhePheThrAspPheLysLysArgLysLeuThrPheArgAlaTrp : 159 :!|||||||||.!!!!.|||||||||!..!..|||||||||! !|||||||||||| yrValArgSerLeuLeuThrAspPheSerSerArgLysLeuMetPheArgAlaTrp 3164372 : ACGTGAGATCGCTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGCATGG : 3164425 160 : LeuProTyrAspTyrSerGluLeuLeuProPheThrLeuSerTyrValHisGlnAl : 178 |||||||||||||||||| !! ! !|||! !|||!!!!:!||||||||||| LeuProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAl 3164426 : TTACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGC : 3164482 179 : aThrThrSerMetPheCysSerCysGlnAsnIleSerCysAspThrLeuPheAlaG : 197 |! !.!!:!!! !.!.|||!!! !..!!:!:!!!!! |||:!!|||!:!.!!| aIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrG 3164483 : TATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTG : 3164539 198 : lyPheLeuValGlnIleTyrCysGlnPheGluIleLeuGluGluArgLeuLysAsn : 215 ||!!.|||:!!.!.|||||||||||||||||||||||||||.!.||||||!:!||| lyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsn 3164540 : GCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAAC : 3164593 216 : ValGlnGlnAspGluSerAsnTyrSerAlaLysGlnCysValArgHisTyrHisGl : 234 |||:!! !!::!!..!:!! |||!.!|||||||||!.!!:!|||:!! !!!: ValLysThrGluGlnAspAsp---SerValLysGlnCysAlaGlnHisHisAspAr 3164594 : GTTAAAACTGAGCAGGATGAC---TCTGTGAAGCAATGTGCTCAACATCACGATCG : 3164647 235 : nIleTyr{Ly} >>>> Target Intron 2 >>>> {s}PheSerArgThrL : 242 :||||||{:!} 325 bp {!}||||||!:!! !: gIleTyr{Gl}++ ++{n}PheSerLysLysV 3164648 : TATATAC{CA}gt.........................ag{A}TTTTCGAAAAAGG : 3164996 243 : euAsnGluLysPheLysValIleLeuPheLeuGlnPheCysAlaIleSerPheIle : 260 !!||||||:!!||||||:!!||||||.!!! !||||||||| !! !! !! :!: alAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerVal 3164997 : TGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTG : 3165050 261 : LeuCysPheAsnLeuTyrArgMetThrThrIleThrMetIleProLysLeuLeuGl : 279 :!!|||||||||||||||||||||||| !|||! !||| |||...:::|| IleCysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGl 3165051 : ATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcga : 3165107 280 : uAlaSerLeuTyrLeuValArgValLeuValGlnIleLeuTyrTyrCysTrpPheS : 298 | !||||||! ! !! !!..!:!!..!||||||!!!||||||||||||!:!. uIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrG 3165108 : aatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACG : 3165164 299 : erAsnGluValLysLeuLys : 304 !!||||||||||||! !||| lyAsnGluValLysHisLys 3165165 : GCAACGAAGTGAAACATAAG : 3165184 vulgar: AfOr70 2 304 . KQ414646.1 3163849 3165184 + 773 M 120 360 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 99 297 G 1 0 M 13 39 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3163850 3165184 773 + . gene_id 1 ; sequence AfOr70 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3163850 3164211 . + . KQ414646.1 exonerate:protein2genome:local exon 3163850 3164211 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164212 3164213 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164212 3164318 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3164317 3164318 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164319 3164657 . + . KQ414646.1 exonerate:protein2genome:local exon 3164319 3164657 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3164658 3164659 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164658 3164982 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3164981 3164982 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164983 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164983 3165184 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3163850 3165184 773 + . alignment_id 1 ; Query AfOr70 ; Align 3163850 3 360 ; Align 3164320 124 297 ; Align 3164617 224 39 ; Align 3164984 238 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr70 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 761 Query range: 2 -> 304 Target range: 3157321 -> 3158656 3 : ValGlnThrLeuGlnTrpThrArgPheLeuLeuSerValCysGlyCysValProPr : 21 :!!.....!|||:!!! ||| !.!!||||||!.!:!!! !|||||| !! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 3157322 : ATGAGCGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTATCTGCC : 3157376 22 : oThrSerTrpLysSerSerPheLysLysSerLeuTyrAsnIleTyrThrLeuValI : 40 | !||||||! !!!! !!|||:!!!:!|||||||||||||||||| !::: oHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheS 3157377 : CCATTCGTGGACAACACCGTTCGAAAGGTCTTTGTACAATATCTACGGGGtgttct : 3157433 41 : leTrpLeuLeuIleLeuSerLeuValSerThrGlnIleLeuAspIleIleIleAsn : 58 :::||||||::: !||||||||| !:!!||||||||||||:!! |||||| erPheLeuLeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIleAsn 3157434 : cctttcttcttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCAAC : 3157487 59 : ValLysAsnLysAsnGluPheIleGluAsnPheTyrIleThrLeuValValPheVa : 77 |||:!!!:!:!!:!!!!:|||! :::|||||| :::||| !|||||||||:! ValGluSerGlnAspAspPheSerAspAsnPheSerValThrAlaValValPheLe 3157488 : GTGGAGAGCCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTTCT : 3157544 78 : lThrSerCysLysMetThrIleIleLeuArgTyrArgLysAsnIleLeuSerLeuI : 96 !|||!!!! !|||:!::!!|||:!!|||! ! ||| !|||.!!:!!! !|||| uThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuI 3157545 : CACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGA : 3157601 97 : leAspAspLeuGlnHisGluProPheSerProIleThrHisGluGluAsnGluIle : 114 ||||| ||||||:!!:!!||||||||||||:!: ! ||||||||||||||| leAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIle 3157602 : TCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATT : 3157655 115 : ArgThrLysPheAsnLysMetAsn{Gl} >>>> Target Intron 1 >>>> : 123 |||.!!||||||.!.|||!!:!.!{||} 107 bp ArgAlaLysPheGluLysIleThr{Gl}++ + 3157656 : AGAGCGAAATTCGAGAAGATCACC{GA}gt.........................a : 3157789 124 : {u}ArgThrSerIleCysTyrThrIleLeuValLeuValSerAlaThrTrpIleP : 141 {|} !!!.!!!!||| !!||| !! |||:::|||:::|||..! !!::|||! +{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleT 3157790 : g{A}TGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATAT : 3157843 142 : heValArgSerPhePheThrAspPheLysLysArgLysLeuThrPheArgAlaTrp : 159 :!|||||||||.!!!!.! !||||||!..!!.|||||||||! !|||||||||||| yrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrp 3157844 : ACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGG : 3157897 160 : LeuProTyrAspTyrSerGluLeuLeuProPheThrLeuSerTyrValHisGlnAl : 178 :!!||||||||||||||| !! ! !|||! !|||!!!! !||||||||||| IleProTyrAspTyrSerProAlaProIlePheIleLeuThrSerValHisGlnAl 3157898 : ATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTCCGTCCATCAAGC : 3157954 179 : aThrThrSerMetPheCysSerCysGlnAsnIleSerCysAspThrLeuPheAlaG : 197 |! !.!!|||! !.!.|||!!! !..!!.!:!!!!! |||||||||!:!.!!| aIleAlaSerThrIleCysCysThrSerThrValThrValAspThrLeuTyrThrG 3157955 : TATAGCCTCGACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTATACACTG : 3158011 198 : lyPheLeuValGlnIleTyrCysGlnPheGluIleLeuGluGluArgLeuLysAsn : 215 ||!!.|||:!!.!.|||||||||||||||||||||||||||.!.||||||!:!||| lyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsn 3158012 : GCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAAC : 3158065 216 : ValGlnGlnAspGluSerAsnTyrSerAlaLysGlnCysValArgHisTyrHisGl : 234 |||:!! !!::!!..!:!! |||!.!|||||||||!.!!:!|||:!! !!!: ValLysThrGluGlnAspAsp---SerValLysGlnCysAlaGlnHisHisAspAr 3158066 : GTTAAAACTGAGCAGGATGAC---TCTGTGAAGCAATGTGCTCAACATCACGATCG : 3158119 235 : nIleTyr{Ly} >>>> Target Intron 2 >>>> {s}PheSerArgThrL : 242 :||||||{:!} 325 bp {!}||||||!:!! !: gIleTyr{Gl}++ ++{n}PheSerLysLysV 3158120 : TATATAC{CA}gt.........................ag{A}TTTTCGAAAAAGG : 3158468 243 : euAsnGluLysPheLysValIleLeuPheLeuGlnPheCysAlaIleSerPheIle : 260 !!||||||:!!||||||:!!||||||.!!! !||||||||| !! !! !! :!: alAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerVal 3158469 : TGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTG : 3158522 261 : LeuCysPheAsnLeuTyrArgMetThrThrIleThrMetIleProLysLeuLeuGl : 279 :!!|||||||||||||||||||||||| !|||! !||| |||...:::|| IleCysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGl 3158523 : ATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcga : 3158579 280 : uAlaSerLeuTyrLeuValArgValLeuValGlnIleLeuTyrTyrCysTrpPheS : 298 | !||||||! ! !! !!..!:!!..!||||||!!!||||||||||||!:!. uIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrG 3158580 : aatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGTTGGTACG : 3158636 299 : erAsnGluValLysLeuLys : 304 !!|||||||||||| !||| lyAsnGluValLysAspLys 3158637 : GCAACGAAGTGAAAGATAAG : 3158656 vulgar: AfOr70 2 304 . KQ414646.1 3157321 3158656 + 761 M 120 360 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 99 297 G 1 0 M 13 39 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157322 3158656 761 + . gene_id 2 ; sequence AfOr70 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3157322 3157683 . + . KQ414646.1 exonerate:protein2genome:local exon 3157322 3157683 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3157684 3157685 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3157684 3157790 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3157789 3157790 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3157791 3158129 . + . KQ414646.1 exonerate:protein2genome:local exon 3157791 3158129 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3158130 3158131 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158130 3158454 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3158453 3158454 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158455 3158656 . + . KQ414646.1 exonerate:protein2genome:local exon 3158455 3158656 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157322 3158656 761 + . alignment_id 2 ; Query AfOr70 ; Align 3157322 3 360 ; Align 3157792 124 297 ; Align 3158089 224 39 ; Align 3158456 238 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr70 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 458 Query range: 2 -> 300 Target range: 3152421 -> 3153645 3 : ValGlnThrLeuGlnTrpThrArgPheLeuLeuSerValCysGlyCysValProPr : 21 :!!.!.||||||...|||||| ! ||||||!!!||| !||| !:!! !!|| MetAspThrLeuSerTrpThrPheLysLeuLeuThrValAsnGlyIleLeuAlaPr 3152422 : aTGGATACTCTAAGCTGGACGTTCAAGCTTCTGACGGTGAACGGTATTCTGGCACC : 3152476 22 : oThrSerTrpLysSerSerPheLysLysSerLeuTyrAsnIleTyrThrLeuValI : 40 |:!!:!!!::! !|||..!!:::!!! !! !||||||...!!:|||! !!!! !!! oSerAlaPheMetSerGlnTrpGlnThrIleLeuTyrGlyMetTyrMetPhePheM 3152477 : GTCCGCTTTCATGTCTCAGTGGCAGACGATTTTGTACGGGATGTACATGTTCTTCA : 3152533 41 : leTrpLeuLeuIleLeuSerLeuValSerThrGlnIleLeuAspIleIleIleAsn : 58 !: !! !:!!:!!! !:!!:!!! !!!! !! !||||||! !!!:|||.!!||| etValSerMetLeuTyrAlaMetGluCysCysLeuIleLeuGlyMetIlePheAsn 3152534 : TGGTGTCGATGCTCTACGCGATGGAGTGCTGCCTGATCTTGGGCATGATATTCAAC : 3152587 59 : ValLysAsnLysAsnGluPheIleGluAsnPheTyrIleThrLeuValValPheVa : 77 ||| ! !:!:!!.!.!!:|||! !||||||.!.||||||||||||:!!:!!.!. ValAspSerGlnGluAspPheSerGluAsnLeuTyrIleThrLeuIleLeuMetCy 3152588 : GTGGACAGTCAGGAGGATTTCAGCGAGAATCTGTATATCACGTTGATACTGATGTG : 3152644 78 : lThrSerCysLysMetThrIleIleLeuArgTyrArgLysAsnIleLeuSerLeuI : 96 !!:!!!!||||||!!: !!!::!::!!! !! ! !|||...||| ! !:!!: sSerCysCysLysIleTyrMetLeuValThrSerAlaLysGlyIleLysValMetV 3152645 : CAGCTGTTGCAAAATCTACATGCTGGTCACTTCTGCGAAGGGGATCAAAGTTATGG : 3152701 97 : leAspAspLeuGlnHisGluProPheSerProIleThrHisGluGluAsnGluIle : 114 !:|||! !|||!:!.!.||||||||| !|||!!:!.!...||||||||||||||| alAspValLeuArgGluGluProPheValProMetAsnArgGluGluAsnGluIle 3152702 : TGGACGTCCTTCGAGAGGAGCCTTTCGTGCCTATGAACAGAGAAGAGAACGAGATT : 3152755 115 : ArgThrLysPheAsnLysMetAsnGlu{A} >>>> Target Intron 1 >>> : 124 |||..!!:!|||.!.:!!! ! !|||{|} 330 bp ArgValArgPheGluGluLysIleGlu{A}++ 3152756 : AGAGTGAGATTCGAGGAGAAAATCGAG{A}gt........................ : 3152788 125 : > {rg}ThrSerIleCysTyrThrIleLeuValLeuValSerAlaThrTrpIleP : 141 {||}!.!:!!! ..!|||||| !!!!:!! !:!!! !!.!..! :!!! --{rg}AsnAlaLysAlaTyrThrTyrPheLeuAspIleLeuValValValLeuT 3152789 : .tt{GG}AACGCTAAGGCTTACACATATTTCCTGGACATCTTGGTAGTCGTTTTAT : 3153166 142 : heValArgSerPhePheThrAspPheLysLysArgLysLeuThrPheArgAlaTrp : 159 :::!!! !|||!:!|||||||||!:!!:!:::||||||... ||||||..!||| rpIleThrSerTyrPheThrAspTyrArgArgArgLysPheLysPheArgValTrp 3153167 : GGATAACATCGTACTTCACGGACTACAGGcgcagaaaattcaaatttcgcgtCTGG : 3153220 160 : LeuProTyrAspTyrSerGluLeuLeuProPheThrLeuSerTyrValHisGlnAl : 178 |||||||||||| !!!! !! !! ! !|||||||||! !||| !!!.||| LeuProTyrAspThrThrThrGlnProValPheThrLeuIleTyrCysGlnGlnIl 3153221 : TTACCTTACGACACTACTACACAACCTGTCTTCACTCTGATCTACTGTCAACAGAT : 3153277 179 : aThrThrSerMetPheCysSerCysGlnAsnIleSerCysAspThrLeuPheAlaG : 197 !..! !!!! !!:! !! ! ! |||:!!! !|||||| !||||||::!| eValCysThrTrpTyrSerValAsnIleAsnValIleCysAspCysLeuPheSerG 3153278 : CGTCTGCACGTGGTACAGCGTGAATATTAACGTCATTTGCGACTGCCTGTTCAGCG : 3153334 198 : lyPheLeuValGlnIleTyrCysGlnPheGluIleLeuGluGluArgLeuLysAsn : 215 ||.!.:!!:!!||||||! !! !!...!! :!!:!! ! !! !::!||| lyLeuMetIleGlnIleCysSerIleLeuArgLysMetLysProThrArgArgAsn 3153335 : GCCTGATGATACAGATTTGCTCAATCTTACGGAAGATGAAACCTACTCGGCGAAAC : 3153388 216 : ValGlnGlnAspGluSerAsnTyrSerAlaLysGlnCysValArgHisTyrHisGl : 234 ! !! ! ! ! !! ! ! !.!!!..|||! ! :::... :: CysValLeuValThrIleIleArgTyrThrSerGlnSerArgGlnGluIleLysAr 3153389 : TGTGTGCTCGTCACCATAATCAGATATACAAGCCAGTCTCGacaagaaattaaacg : 3153445 235 : nIleTyrLysPheSerArgThrLeuAsnGluLysPheLysValIleLeuPheLeuG : 253 : ! !!!.:!!!:!! !:!!|||||||||.!! ! !:!!! ! !:!!| gTyrVal***LeuAlaGlnIleValAsnGluLysLeuGlyAsnValSerSerIleG 3153446 : atacgTTTGATTGGCGCAAATAGTGAACGAGAAGCTTGGAAATGTCTCGAGTATAC : 3153502 254 : lnPheCysAlaIleSerPheIleLeuCysPheAsnLeuTyrArgMetThrThrIle : 271 |||||... !! !!!! :!!|||||||||||||||||||||:!!..!||| lnPheAlaIleSerThrGlyAlaIleCysPheAsnLeuTyrArgMetSerValIle 3153503 : AGTTCGCGATAAGCACAGGAGCGATATGCTTCAATCTCTATCGAATGTCGGTGATA : 3153556 272 : ThrMetIleProLysLeuLeuGluAlaSerLeuTyrLeuValArgValLeuValGl : 290 !:!: !||||||!!!:!!||||||! ! ! ! !||| !!:!!|||!.!|| GluLeuGlyProLysPheValGluAlaLeuThrIleThrValCysLeuLeuAlaGl 3153557 : GAACTCGGTCCAAAGTTTGTGGAAGCGTTAACTATCACAGTATGCTTACTCGCGCA : 3153613 291 : nIleLeuTyrTyrCysTrpPheSerAsnGlu : 300 ||||!!!||||||||||||!::...|||::: nIlePheTyrTyrCysTrpTyrGlyAsnAsp 3153614 : GATATTTTACTATTGTTGGTAcggtaacgat : 3153645 vulgar: AfOr70 2 300 . KQ414646.1 3152421 3153645 + 458 M 121 363 S 0 1 5 0 2 I 0 326 3 0 2 S 1 2 M 176 528 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3152422 3153645 458 + . gene_id 3 ; sequence AfOr70 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3152422 3152785 . + . KQ414646.1 exonerate:protein2genome:local exon 3152422 3152785 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3152786 3152787 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3152786 3153115 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3153114 3153115 . + . intron_id 0 ; splice_site "TT" KQ414646.1 exonerate:protein2genome:local cds 3153116 3153645 . + . KQ414646.1 exonerate:protein2genome:local exon 3153116 3153645 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3152422 3153645 458 + . alignment_id 3 ; Query AfOr70 ; Align 3152422 3 363 ; Align 3153118 125 528 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr70 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 412 Query range: 0 -> 238 Target range: 3159614 -> 3160401 1 : MetValValGlnThrLeuGlnTrpThrArgPheLeuLeuSerValCysGlyCysVa : 19 ||| !:!!!!.|||||||||! !:!! ! !|||!!!:!!||||||! !:! MetHisMetHisThrLeuGlnLeuSerLeuLysThrLeuThrIleCysGlyTyrIl 3159615 : ATGCATATGCACACGTTGCAATTGTCGTTGAAAACTTTGACGATTTGCGGCTACAT : 3159669 20 : lProProThrSerTrpLysSerSerPheLysLysSerLeuTyrAsnIleTyrThrL : 38 ! !|||||||||||||||||| !! !||| !|||||||||:!!:!!|||: eArgProThrSerTrpLysSerProGlyLeuLysLeuLeuTyrAsnValHisThrV 3159670 : AAGGCCAACATCGTGGAAGTCACCGGGGCTAAAGCTTCTCTATAACGTACACACGG : 3159726 39 : euValIleTrpLeuLeuIleLeuSerLeuValSerThrGlnIleLeuAspIleIle : 56 !!..!:!! !:!!:!!:!! !!!!!!! !! !.!!|||||||||||||||||| alThrValValValValLeuSerThrPhePheValAlaGlnIleLeuAspIleIle 3159727 : TTACTGTAGTGGTAGTTCTTAGCACGTTTTTCGTCGCCCAGATATTggacattatt : 3159780 57 : IleAsnValLysAsnLysAsnGluPheIleGluAsnPheTyrIleThrLeuValVa : 75 ...||||||:!!|||:!!:!!||||||! !!!:||||||! !||||||! ! !|| PheAsnValGluAsnGlnAspGluPheSerAspAsnPheCysIleThrCysCysVa 3159781 : ttcaacgtgGAGAATCAAGACGAGTTTAGCGACAATTTCTGCATAACGTGCTGCGT : 3159837 76 : lPheValThrSerCysLysMetThrIleIleLeuArgTyrArgLysAsnIleLeuS : 94 |.!. !!:! ! ! |||:!! !! !:!:|||! ! |||:!!! |||! !! lMetAsnSerLeuGlyLysLeuTyrSerLeuLeuIleGlyArgGluMetIleGlnA 3159838 : GATGAACAGCCTTGGAAAGTTGTACAGCTTGCTGATAGGACGAGAAATGATCCAAA : 3159894 95 : erLeuIleAspAspLeuGlnHisGluProPheSer{Pr} >>>> Target Int : 106 :!|||||||||...|||||| !!!:|||.!!!!!{||} 67 bp snLeuIleAspSerLeuGlnSerAspProLeuArg{Pr}++ 3159895 : ATTTAATAGACTCGCTACAAAGTGACCCTCTTAGG{CC}gt............... : 3159934 107 : ron 1 >>>> {o}IleThrHisGluGluAsnGluIleArgThrLysPheAsnLy : 120 {|}|||... ::: |||::: ::: ... ! || +-{o}IleVal***LysThrAsnAspGlyLysLeuAsnGlyMetLy 3159935 : ..........aa{a}attgtataaaaaacaaacgatggaaaattgaatggaATGAA : 3160039 121 : sMetAsn<-><->GluArgThrSerIleCysTyrThrIleLeuValLeuValSerA : 137 |!!:::! ..!!:! !|||!!:..!||||||:!!! !..!:!!:!!|||| sIleSerCysCysArgLysLeuSerMetAlaTyrThrValCysThrValLeuSerA 3160040 : AATATCCTGTTGTAGAAAGCTCTCGATGGCCTATACGGTTTGTACAGTACTGAGCG : 3160096 138 : laThrTrpIlePheValArgSerPhePheThrAspPheLysLysArgLysLeuThr : 155 ||||| ! :!!!:::!! !||| !.!.|||! |||!:!! |||:!!||| !! laThrGlyValTrpMetLeuSerAlaMetThrAlaPheArgIleArgGluLeuPro 3160097 : CGACTGGTGTATGGATGTTGTCGGCCATGACGGCATTCAGGATCAGAGAGTTACCC : 3160150 156 : PheArgAlaTrpLeuProTyrAspTyrSerGluLeuLeuPro<->PheThrLeuSe : 173 .!!|||!.!|||||||||!:!||||||!!!! !||| ! |||!:!|||!! LeuArgValTrpLeuProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuTh 3160151 : CTTCGAGTATGGTTACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTAC : 3160207 174 : rTyrValHisGlnAlaThrThrSerMetPheCysSerCysGlnAsnIleSerCysA : 192 !|||!.!:!!||| !..!||| !!!:||| !!!! ! !! !!!:.!! !| rTyrAlaTyrGlnPheValThrLeuIlePheIleThrThrAlaIleMetGlyThrA 3160208 : CTACGCTTATCAGTTTGTAACTCTGATATTCATTACTACCGCGATTATGGGTACTG : 3160264 193 : spThrLeuPheAlaGlyPheLeuValGlnIleTyrCysGlnPheGluIleLeuGlu : 210 ||!.!||||||::!|||.!.|||:!!!!.||||||||||||||||||||||||:!! spAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGln 3160265 : ACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAA : 3160318 211 : GluArgLeuLysAsnValGlnGlnAspGluSerAsnTyrSerAlaLysGlnCysVa : 229 .!.|||||||||!:!:!!:!!! |||..! .!.||||||||||||||||||!. HisArgLeuLysSerIleLysProAspArg---GluTyrSerAlaLysGlnCysAl 3160319 : CATCGTCTGAAGAGCATTAAACCTGACAGG---GAGTACTCTGCGAAACAGTGTGC : 3160372 230 : lArgHisTyrHisGlnIleTyrLysPhe : 238 ! !|||:!!:!!!::|||||||||||| aPheHisHisTyrArgIleTyrLysPhe 3160373 : TTTTCATCATTATCGCATATACAAGTTT : 3160401 vulgar: AfOr70 0 238 . KQ414646.1 3159614 3160401 + 412 M 105 315 S 0 2 5 0 2 I 0 63 3 0 2 S 1 1 M 16 48 G 0 6 M 47 141 G 0 3 M 51 153 G 1 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3159615 3160401 412 + . gene_id 4 ; sequence AfOr70 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3159615 3159931 . + . KQ414646.1 exonerate:protein2genome:local exon 3159615 3159931 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3159932 3159933 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3159932 3159998 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3159997 3159998 . + . intron_id 0 ; splice_site "aa" KQ414646.1 exonerate:protein2genome:local cds 3159999 3160401 . + . KQ414646.1 exonerate:protein2genome:local exon 3159999 3160401 . + . insertions 9 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3159615 3160401 412 + . alignment_id 4 ; Query AfOr70 ; Align 3159615 1 315 ; Align 3160000 107 48 ; Align 3160054 123 141 ; Align 3160198 170 153 ; Align 3160351 222 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr70 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 345 Query range: 11 -> 220 Target range: 3149050 -> 3150326 12 : LeuLeuSerValCysGlyCysValProProThrSerTrpLysSerSerPheLysLy : 30 :!!|||!!!:!!||||||||| ! !||| !|||!! ::!!!!!!! ! || IleLeuThrIleCysGlyCysTrpArgProCysSerCysArgThrThrArgAlaLy 3149051 : ATACTGACGATCTGCGGATGCTGGAGGCCGTGCTCGTGCCGAACGACACGCGCCAA : 3149105 31 : sSerLeuTyrAsnIleTyrThrLeuValIleTrpLeuLeuIleLeuSerLeuValS : 49 |:!! !|||! !:!!||||||:!! !!:!: ||||||:!:! !|||!!! !! sAlaAlaTyrIleValTyrThrMetPheValValLeuLeuLeuHisSerPheCysI 3149106 : GGCCGCGTACATCGTTTACACGATGTTCGTGGTACTTTTATTGCACAGCTTCTGCA : 3149162 50 : erThrGlnIleLeuAspIleIleIleAsnValLysAsnLysAsnGluPheIleGlu : 67 :::|||......::::::|||:!:|||:!!!:!!.. !:!!|||.!.! !||| leSerGlnPhePheAsnValIleLeuAsnLeuArgThrAlaAspGluLeuSerGlu 3149163 : TctcgcaatttttcaacgtgatACTGAACTTGAGAACGGCGGACGAGCTGAGCGAG : 3149216 68 : AsnPheTyrIleThrLeuValValPheValThrSerCysLysMetThrIleIleLe : 86 !:!||||||!!: !:!!!.! ! !!:!!:!!!!!||||||!!:..!! :!:|| SerPheTyrMetPheIleAlaSerValLeuSerCysCysLysIleValThrLeuLe 3149217 : AGTTTCTACATGTTCATCGCGTCCGTTCTGTCCTGCTGCAAGATCGTCACGCTGCT : 3149273 87 : uArgTyrArgLysAsnIleLeuSerLeuIleAspAspLeuGlnHisGluProPheS : 105 |! ! !!!.! !!:!||| !! !||| |||:!!.!.||||||! !! uThrAsnHisGlySerIleGluIleLeuArgArgArgLeuGluGluGluProCysL 3149274 : GACGAACCACGGAAGCATCGAGATCCTCCGGAGGAGACTGGAGGAGGAGCCGTGTA : 3149330 106 : erProIleThrHisGluGluAsnGluIleArgThrLysPheAsnLysMetAsn{Gl : 123 .!|||:!:!:! !|||||| !! |||!:!!:!||||||:!!!:!! ! !{! ysProValSerAlaGluGluAlaValIleGlnSerLysPheAspArgAsnIle{Gl 3149331 : AACCTGTGAGCGCCGAGGAGGCTGTCATACAGAGTAAATTCGACAGAAACATC{GG : 3149384 124 : } >>>> Target Intron 1 >>>> {u}ArgThrSerIleCysTyrThrIl : 131 } 649 bp {!} !..!!!!|||! !|||||||| }++ ++{y}SerValThrIleTyrTyrThrIl 3149385 : }gt.........................ag{G}TCGGTGACGATTTACTACACGAT : 3150057 132 : eLeuValLeuValSerAlaThrTrpIlePheValArgSerPhePheThrAspPheL : 150 ||||||| !:!!!!!!.! !!! !!:.!!:!! !|||!!..!! !||||||! eLeuValGluLeuThrValLeuCysMetIleLeuSerSerLeuLeuGlyAspPheA 3150058 : TCTGGTGGAACTCACGGTCCTCTGTATGATCCTCTCTTCGTTGCTCGGCGACTTTA : 3150114 151 : ysLysArgLysLeuThrPheArgAlaTrpLeuProTyrAspTyrSerGluLeuLeu : 168 !.:!!|||:!!|||.!!!:!|||||||||||||||!:!||||||||| !! ! ! snGluArgGluLeuAlaTyrArgAlaTrpLeuProPheAspTyrSerLeuProThr 3150115 : ACGAGCGGGAACTGGCGTACAGAGCCTGGCTGCCCTTCGATTACTCTCTGCCAACT : 3150168 169 : ProPheThrLeuSerTyrValHisGlnAlaThrThrSerMetPheCysSerCysGl : 187 !!:! !:!!:!!|||||||||||| !..!.!! !!!: ! ||| !.. TyrTyrTyrIleAlaTyrValHisGlnIleValAlaLeuIleGlyThrSerLeuSe 3150169 : TACTATTACATCGCGTACGTTCATCAGATCGTCGCGCTGATCGGTACGTCGCTTTC : 3150225 188 : nAsnIleSerCysAspThrLeuPheAlaGlyPheLeuValGlnIleTyrCysGlnP : 206 !|||:!!:!!||||||..!:!!.!!..!|||!!.||||||!!. !! ! !!||| rAsnValAlaCysAspValIleIleCysGlyLeuLeuValHisAlaCysGlyGlnG 3150226 : GAACGTCGCCTGCGACGTGATCATCTGCGGGTTGCTCGTTCACGCTTGCGGCCAAC : 3150282 207 : heGluIleLeuGluGluArgLeuLysAsnValGlnGlnAspGlu : 220 |||||||||:!!.!.|||:!!|||.!.:!! !|||!!::!! lnGluIleLeuLysHisArgMetLysGluMetThrGlnGluGln 3150283 : AGGAGATTCTCAAGCACAGAATGAAGGAGATGACGCAGGAACAG : 3150326 vulgar: AfOr70 11 220 . KQ414646.1 3149050 3150326 + 345 M 111 333 S 0 2 5 0 2 I 0 645 3 0 2 S 1 1 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3149051 3150326 345 + . gene_id 5 ; sequence AfOr70 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3149051 3149385 . + . KQ414646.1 exonerate:protein2genome:local exon 3149051 3149385 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3149386 3149387 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3149386 3150034 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150033 3150034 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150035 3150326 . + . KQ414646.1 exonerate:protein2genome:local exon 3150035 3150326 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3149051 3150326 345 + . alignment_id 5 ; Query AfOr70 ; Align 3149051 12 333 ; Align 3150036 124 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr70 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 345 Query range: 11 -> 237 Target range: 3179640 -> 3180389 12 : LeuLeuSerValCysGlyCysValProProThrSerTrpLysSerSerPheLysLy : 30 ...||||||:!! !!|||||| ! !|||! !||||||...|||!!!!:!|||! PheLeuSerIleGlyGlyCysTrpArgProIleSerTrpSerSerThrTyrLysTh 3179641 : tttctcaGTATCGGTGGCTGTTGGAGACCGATCTCGTGGTCTTCGACGTACAAAAC : 3179695 31 : sSerLeuTyrAsnIleTyrThrLeuValIleTrpLeuLeuIleLeuSerLeuValS : 49 !:!!:!!||||||:!!||||||:!!:!!:!!! :!!:!! !:!!!:!!!!:!! rAlaIleTyrAsnValTyrThrValLeuValLeuIleMetGlyValAsnPheMetV 3179696 : GGCAATCTACAATGTCTACACCGTTCTCGTATTAATCATGGGTGTTAATTTCATGG : 3179752 50 : erThrGlnIleLeuAspIleIleIleAsnValLysAsnLysAsnGluPheIleGlu : 67 !:!!||| !!!! !! !!!:.!!!.!:!!:!!!.! !.!.!!:|||:!!!!: alSerGln---PheGlySerMetPheThrIleGluThrValGlnAspPheValAsp 3179753 : TTTCGCAA---TTTGGCAGCATGTTCACCATAGAAACCGTACAAGATTTCGTCGAC : 3179803 68 : AsnPheTyrIleThrLeuValValPheValThrSerCysLysMetThrIleIleLe : 86 ! !|||||| !:!! !||||||||| !!!!||||||:!!:!!! !:!::! LeuThrTyrIleCysValSerValPheValGlyCysCysLysLeuSerAsnValVa 3179804 : CTTACTTACATATGCGTCTCCGTGTTCGTCGGTTGTTGCAAGCTGTCAAACGTGGT : 3179860 87 : uArgTyrArgLysAsnIleLeuSerLeuIleAspAspLeuGlnHisGluProPheS : 105 ! !|||||||||:!!|||:!!..!|||!!::!! !!!!..!.!.!!:|||! !: lPheTyrArgLysAspIleIleAspLeuMetAsnIlePheMetGluAspProCysA 3179861 : GTTCTATCGGAAAGATATCATAGACCTGATGAACATCTTCATGGAGGATCCTTGTG : 3179917 106 : erProIleThrHisGluGluAsnGluIleArgThrLysPheAsnLysMetAsn{Gl : 123 !! ! !.! ! ||||||:!!:!!:!:!:!.!!!:!!:!:!! ! ... {.. laCysSerAsnLysGluGluAspGlnValGlnAlaArgTyrAspAspGlnLeu{Ar 3179918 : CATGTTCGAACAAGGAGGAGGACCAGGTGCAAGCGAGATACGACGATCAATTA{CG : 3179971 124 : } >>>> Target Intron 1 >>>> {u}ArgThrSerIleCysTyrThrIl : 131 } 77 bp {!}!:!!.!:!!:!! ! ||||||!! }++ ++{g}LysAsnAlaValArgTyrThrMe 3179972 : }gt.........................ag{G}AAAAACGCTGTCAGATACACAAT : 3180072 132 : eLeuValLeuValSerAlaThrTrpIlePheValArgSerPhePheThrAspPheL : 150 ::!!||| !:!!|||!.!.!!! !! !.!!:!!!.!|||!!. ! |||:!!|||: tValValGluMetSerValAlaSerThrIleLeuAsnSerLeuValThrAsnPheG 3180073 : GGTAGTCGAGATGTCGGTCGCCTCGACTATTTTAAACTCGTTAGTGACCAACTTTC : 3180129 151 : ysLysArgLysLeuThrPheArgAlaTrpLeuProTyrAspTyrSerGluLeuLeu : 168 !! ! !!!:!||||||!:!|||!.!|||!!!||||||||||||!!! !:!! lnHisGlyArgLeuThrTyrArgGlyTrpPheProTyrAspTyrThrThrAlaVal 3180130 : AACACGGCAGACTAACCTACAGAGGCTGGTTCCCTTACGATTACACGACCGCCGTA : 3180183 169 : ProPheThrLeuSerTyrValHisGlnAlaThrThrSerMetPheCysSerCysGl : 187 ! !||| !!|||!!!|||!.!! ||| ! ! ! !:!: ! ! !|||!! LeuPheProLeuThrTyrAlaLeuGlnLeuLeuCysValLeuValTyrSerTrpIl 3180184 : CTTTTTCCATTGACATACGCTCTGCAGCTATTATGCGTGCTCGTATATTCCTGGAT : 3180240 188 : nAsnIleSerCysAspThrLeuPheAlaGlyPheLeuValGlnIleTyrCysGlnP : 206 :!!:!!||| |||! !|||||| !|||.!.|||:!!|||:!:! !||||||| eHisValSerValAspIleLeuPhePheGlyLeuLeuMetGlnLeuCysCysGlnP 3180241 : CCACGTTTCAGTGGATATTCTCTTCTTCGGACTGTTGATGCAACTGTGCTGTCAAT : 3180297 207 : heGluIleLeuGluGluArgLeuLysAsnValGlnGlnAspGluSerAsnTyrSer : 224 ||!!:|||||| ...|||...!..!:!:!! !...|||!:!!!. ! ! heAspIleLeuPheSerArgPheSerSerIle---ThrSerGluAsnLysGlyVal 3180298 : TCGAcattctcttctctcgtttcAGTAGCATA---ACGTCGGAGAACAAGGGTGTT : 3180348 225 : AlaLysGlnCysValArgHisTyrHisGlnIleTyrLys : 237 !::!::!|||:!!||||||:!! !!::!||||||::! LeuArgArgCysIleArgHisHisAspArgIleTyrArg 3180349 : TTACGAAGATGCATTCGTCATCACGACAGAATTTACCGG : 3180389 vulgar: AfOr70 11 237 . KQ414646.1 3179640 3180389 + 345 M 40 120 G 1 0 M 70 210 S 0 2 5 0 2 I 0 73 3 0 2 S 1 1 M 93 279 G 1 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3179641 3180389 345 + . gene_id 6 ; sequence AfOr70 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3179641 3179972 . + . KQ414646.1 exonerate:protein2genome:local exon 3179641 3179972 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3179973 3179974 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3179973 3180049 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3180048 3180049 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3180050 3180389 . + . KQ414646.1 exonerate:protein2genome:local exon 3180050 3180389 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3179641 3180389 345 + . alignment_id 6 ; Query AfOr70 ; Align 3179641 12 120 ; Align 3179761 53 210 ; Align 3180051 124 279 ; Align 3180330 218 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr70 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 321 Query range: 139 -> 313 Target range: 3174314 -> 3175165 140 : IlePheValArgSerPhePheThrAspPheLysLysArgLysLeuThrPheArgAl : 158 |||::: !! !|||.!!||||||! !||||||! |||:!!||| !!.!!|||!. IleTrpPheSerSerIlePheThrAlaPheLysIleArgGluLeuProLeuArgGl 3174315 : atatggTTCTCGTCGATCTTCACGGCTTTTAAGATCAGAGAGTTACCCCTTCGAGG : 3174369 159 : aTrpLeu-ProTyrAspTyrSerGluLeuLeuPro<->PheThrLeuSerTyrVal : 175 !||||||#|||!:!||||||!!!! !||| ! |||!:!|||!!!|||!.! yTrpLeu#ProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAla 3174370 : ATGGTTAACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCT : 3174424 176 : HisGlnAlaThrThrSerMetPheCysSerCysGlnAsnIleSerCysAspThrLe : 194 :!!||| !..!||| !!!:||| !!!!! ! ! !|||.!!! !|||!.!|| TyrGlnPheValThrLeuIlePheLeuThrSerAlaIleIleGlySerAspAsnLe 3174425 : TATCAGTTTGTAACTCTGATATTCCTTACTTCTGCTATTATCGGTTCTGACAATCT : 3174481 195 : uPheAlaGlyPheLeuValGlnIleTyrCysGlnPheGluIleLeuGluGluArgL : 213 ||||::!|||.!.|||:!!!!.||||||||||||||||||||||||:!!.!.|||| uPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgL 3174482 : ATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTC : 3174538 214 : euLysAsnValGlnGlnAspGluSerAsnTyrSerAlaLysGlnCysValArgHis : 231 |||||!:!:!!:!!! |||..! .!.||||||||||||||||||!.! !||| euLysSerIleLysProAspArg---GluTyrSerAlaLysGlnCysAlaPheHis 3174539 : TGAAGAGCATTAAACCTGACAGG---GAGTACTCTGCGAAACAGTGTGCTTTTCAT : 3174589 232 : TyrHisGlnIleTyr{Ly} >>>> Target Intron 1 >>>> {s}PheSe : 239 :!!:!!!::||||||{||} 328 bp {|}|||:! HisTyrArgIleTyr{Ly}++ ++{s}PheAl 3174590 : CATTATCGCATATAC{AA}gt.........................ag{A}TTCGC : 3174941 240 : rArgThrLeuAsnGluLysPheLysValIleLeuPheLeuGlnPheCysAlaIleS : 258 !..!! !:!!|||! !||||||!..:!!! :!! ! !|||||| !.!! !! aGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValThrT 3174942 : TGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCA : 3174998 259 : erPheIleLeuCysPheAsnLeuTyrArgMetThrThrIleThrMetIleProLys : 276 !!.!.! !:!!||||||||||||!:!|||:!!||| !! !! !:!! ! !!:!! hrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysValTyrSerGln 3174999 : CTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGGTGTATTCGCAA : 3175052 277 : LeuLeuGluAlaSerLeuTyrLeuValArgValLeuValGlnIleLeuTyrTyrCy : 295 :!!|||! ! !! !! !!:!:!!|||!!!|||!!!!.!||||||!!!|||! !|| ValLeuAlaLeuIleProPheMetValSerValPheAlaGlnIlePheTyrCysCy 3175053 : GTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTG : 3175109 296 : sTrpPheSerAsnGluValLysLeuLysSerLeuGluValProGlyMetIlePhe : 313 ||||!:!.!!||||||..!|||:!!||| !! !!!: ! !!! !.!.:::||| sTrpTyrGlyAsnGluThrLysValLysValArgAspGlnThrAspPheLeuPhe 3175110 : CTGGTATGGAAACGAGACCAAAGTGAAGGTACGTGATCAAACAGACTTCttattc : 3175165 vulgar: AfOr70 139 313 . KQ414646.1 3174314 3175165 + 321 M 21 63 F 0 1 M 9 27 G 0 3 M 51 153 G 1 0 M 15 45 S 0 2 5 0 2 I 0 324 3 0 2 S 1 1 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174315 3175165 321 + . gene_id 7 ; sequence AfOr70 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3174315 3174608 . + . KQ414646.1 exonerate:protein2genome:local exon 3174315 3174608 . + . insertions 3 ; deletions 1 ; frameshifts 1 KQ414646.1 exonerate:protein2genome:local splice5 3174609 3174610 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3174609 3174936 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3174935 3174936 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3174937 3175165 . + . KQ414646.1 exonerate:protein2genome:local exon 3174937 3175165 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3174315 3175165 321 + . alignment_id 7 ; Query AfOr70 ; Align 3174315 140 63 ; Align 3174379 161 27 ; Align 3174409 170 153 ; Align 3174562 222 45 ; Align 3174938 238 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr70 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 197 Query range: 1 -> 120 Target range: 3154918 -> 3155275 2 : ValValGlnThrLeuGlnTrpThrArgPheLeuLeuSerValCysGlyCysValPr : 20 :!!:!!!!. !|||||| !! ! !!!! !:!!:!!|||||| ! !|| MetMetHisLeuLeuGlnLysGlnLeuGlnPheCysAlaMetCysGlyLeuTrpPr 3154919 : ATGATGCATCTACTGCAAAAACAACTGCAATTTTGCGCAATGTGCGGTCTCTGGCC : 3154973 21 : oProThrSerTrpLysSerSerPheLysLysSerLeuTyrAsnIleTyrThrLeuV : 39 |||| !!|||! !! !||||||!:!! ! !|||::!:!!!:!:!!! ! oProProSerSerAlaProLeuPheLysArgPheAlaTyrSerValPheSerTrpT 3154974 : ACCGCCATCATCAGCTCCGCTGTTTAAAAGATTCGCCTACTCTGTATTCTCGTGGT : 3155030 40 : alIleTrpLeuLeuIleLeuSerLeuValSerThrGlnIleLeuAspIleIleIle : 57 !! ! :!!|||:!:! !! ! !|||! !!:!||||||:!!|||:!!|||:!: yrThrLeuIleLeuValTyrIleThrValPheSerGlnIleMetAspLeuIleVal 3155031 : ACACGTTAATACTGGTGTACATCACGGTTTTCAGCCAAATCATGGACCTAATCGTG : 3155084 58 : AsnValLysAsnLysAsnGluPheIleGluAsnPheTyrIleThrLeuValValPh : 76 ||||||! !!.!:!!:!!||||||! !!!:|||||||||||| !|||!.! ! AsnValThrThrGlnAspGluPheSerAspAsnPheTyrIleLeuLeuAlaCysAl 3155085 : AACGTGACGACTCAAGACGAGTTTAGCGACAATTTTTACATACTTCTGGCGTGTGC : 3155141 77 : eValThrSerCysLysMetThrIleIleLeuArgTyrArgLysAsnIleLeuSerL : 95 :!!:!!! ! ||| !! !:!:|||!.! !|||||||||:!!! ! !!: aIleSerLeuGlnLysAlaGlnSerValLeuAsnSerArgLysAsnValHisArgM 3155142 : GATATCCTTGCAGAAAGCACAGAGTGTGTTAAACAGTCGTAAGAATGTCCACCGTA : 3155198 96 : euIleAspAspLeuGlnHisGluProPheSerProIleThrHisGluGluAsnGlu : 113 !!|||||| !|||.!. !||||||||| !||| ! ! ! ||||||! !||| etIleAspLeuLeuAsnSerGluProPheHisProGluCysLysGluGluIleGlu 3155199 : TGATCGATCTTTTGAACAGCGAACCTTTTCATCCAGAATGTAAGGAGGAAATCGAG : 3155252 114 : IleArgThrLysPheAsnLys : 120 ||||||!:!!:!.!!::!:!! IleArgSerArgIleSerGlu 3155253 : ATAAGAAGTAGGATCTCCGAG : 3155275 vulgar: AfOr70 1 120 . KQ414646.1 3154918 3155275 + 197 M 119 357 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3154919 3155275 197 + . gene_id 8 ; sequence AfOr70 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3154919 3155275 . + . KQ414646.1 exonerate:protein2genome:local exon 3154919 3155275 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3154919 3155275 197 + . alignment_id 8 ; Query AfOr70 ; Align 3154919 2 357 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr70 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 235 -> 313 Target range: 3160720 -> 3160954 236 : TyrLysPheSerArgThrLeuAsnGluLysPheLysValIleLeuPheLeuGlnPh : 254 !:!!:!|||:!!..!! !:!!|||! !||||||!..:!!! :!! ! !||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3160721 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3160775 255 : eCysAlaIleSerPheIleLeuCysPheAsnLeuTyrArgMetThrThrIleThrM : 273 | !.!! !!!!.!.! !:!!||||||||||||!:!|||:!!||| !! !! !: eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3160776 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3160832 274 : etIleProLysLeuLeuGluAlaSerLeuTyrLeuValArgValLeuValGlnIle : 291 !! ! !!:!!:!!|||! ! !! !! !!:!:!!|||!!!|||!!!!.!|||||| alTyrSerGlnValLeuAlaLeuIleProPheMetValSerValPheAlaGlnIle 3160833 : TGTATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATA : 3160886 292 : LeuTyrTyrCysTrpPheSerAsnGluValLysLeuLysSerLeuGluValProGl : 310 !!!|||! !||||||!:!.!!||||||..!|||:!!||| !! !!!: ! !!! PheTyrCysCysTrpTyrGlyAsnGluThrLysValLysValArgAspGlnThrAs 3160887 : TTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGGTACGTGATCAAACAGA : 3160943 311 : yMetIlePhe : 313 !.!.:::||| pPheLeuPhe 3160944 : CTTCttattc : 3160954 vulgar: AfOr70 235 313 . KQ414646.1 3160720 3160954 + 149 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160721 3160954 149 + . gene_id 9 ; sequence AfOr70 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160721 3160954 . + . KQ414646.1 exonerate:protein2genome:local exon 3160721 3160954 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160721 3160954 149 + . alignment_id 9 ; Query AfOr70 ; Align 3160721 236 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr70 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 232 -> 304 Target range: 3155793 -> 3156012 233 : HisGlnIleTyrLysPheSerArgThrLeuAsnGluLysPheLysValIleLeuPh : 251 |||.!.! !! !!:!|||!!! !! !:!!||||||:!!|||:!!:!! :!!|| HisAspAsnCysArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePh 3155794 : cACGATAATTGCAGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTT : 3155848 252 : eLeuGlnPheCysAlaIleSerPheIleLeuCysPheAsnLeuTyrArgMetThrT : 270 | !||||||...!.!! !!!!.!. :!!|||||||||||||||! !:!:||| eThrGlnPheAlaValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrG 3155849 : CACTCAATTCGCGGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAG : 3155905 271 : hrIleThrMetIlePro<->LysLeuLeuGluAlaSerLeuTyrLeuValArgVal : 287 ! ! !:!!! ||| !:!! !:!!||| !! !:!!||| ! ! !!:!! lySerAspValThrProIleArgTyrValGluIleIleMetTyrSerSerCysMet 3155906 : GATCAGATGTGACGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATG : 3155959 288 : LeuValGlnIleLeuTyrTyrCysTrpPheSerAsnGluValLysLeuLys : 304 |||..!||||||!!! !|||||||||!:!.!!|||||||||||||||||| LeuThrGlnIlePheIleTyrCysTrpTyrGlyAsnGluValLysLeuLys 3155960 : CTCACGCAAATATTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAG : 3156012 vulgar: AfOr70 232 304 . KQ414646.1 3155793 3156012 + 148 M 43 129 G 0 3 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155794 3156012 148 + . gene_id 10 ; sequence AfOr70 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155794 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155794 3156012 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155794 3156012 148 + . alignment_id 10 ; Query AfOr70 ; Align 3155794 233 129 ; Align 3155926 276 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr70 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 234 -> 304 Target range: 3178378 -> 3178591 235 : IleTyrLysPheSerArgThrLeuAsnGluLysPheLysValIleLeuPheLeuGl : 253 ||| :::|||!!!!:!|||:!!||| !|||:!! !!!::!!|||||||| IleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLeuGl 3178379 : atttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCTGCA : 3178433 254 : nPheCysAlaIleSerPheIleLeuCysPheAsnLeuTyrArgMetThrThrIleT : 272 ||||! ! !! !||| :!:||||||!!.!:!:!!|||!:!|||:!!||||||! nPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrIleA 3178434 : ATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGATTA : 3178490 273 : hrMetIlePro<->LysLeuLeuGluAlaSerLeuTyrLeuValArgValLeuVal : 289 .! .!! ! !!.!!!:!! !..!:!!! !|||||| ! !!:!!|||..! snProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeuThr 3178491 : ATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACG : 3178544 290 : GlnIleLeuTyrTyrCysTrpPheSerAsnGluValLysLeuLys : 304 |||:!:! !! ||||||||||||.!!|||||||||! !|||||| GlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys 3178545 : CAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: AfOr70 234 304 . KQ414646.1 3178378 3178591 + 142 M 41 123 G 0 3 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178379 3178591 142 + . gene_id 11 ; sequence AfOr70 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178379 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178379 3178591 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178379 3178591 142 + . alignment_id 11 ; Query AfOr70 ; Align 3178379 235 123 ; Align 3178505 276 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 156 -> 227 Target range: 3164397 -> 3164610 157 : SerAspArgAlaLeuProPheAsnLeuTrpIleAspPheProValGlyLeuSerPr : 175 |||..!||| !||| !|||... !|||:!! !!:! ! !..!! !:!!|| SerSerArgLysLeuMetPheArgAlaTrpLeuProTyrAspTyrSerProAlaPr 3164398 : AGTAGTAGAAAACTGATGTTTCGAGCATGGTTACCCTACGATTACTCCCCTGCGCC : 3164452 176 : oTyrPheGluLeuLeuPheIleIleGlnIleLeuCysValTyrHisValAlaThrC : 194 | !||| ||| !|||:!! !||| !:!!..!!.! !..!|||! oIlePheIleLeuThrPheValHisGlnAlaIleAlaAlaThrIleCysCysThrS 3164453 : CATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCGACGATATGTTGCACTT : 3164509 195 : ysTyrIleCysPheAspAsnLeuLeuCysIleValAsnLeuHisValAlaGlyGln : 212 !:!! ! ! |||::!|||! ! ! !:!! :!!:!!:!! ! !!||| erSerValThrValAspSerLeuTyrThrGlyLeuLeuIleAsnIleTyrCysGln 3164510 : CGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTGATTAATATCTACTGCCAG : 3164563 213 : PheArgIleLeuGlnHisArgLeuLysAsnLeuValAlaAspGlu : 227 |||..!||||||:!!|||||||||!:!|||:!! !.!!!!::!! PheGluIleLeuGluHisArgLeuArgAsnValLysThrGluGln 3164564 : TTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAACTGAGCAG : 3164610 vulgar: AfOr75P 156 227 . KQ414646.1 3164397 3164610 + 100 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164398 3164610 100 + . gene_id 1 ; sequence AfOr75P ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164398 3164610 . + . KQ414646.1 exonerate:protein2genome:local exon 3164398 3164610 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164398 3164610 100 + . alignment_id 1 ; Query AfOr75P ; Align 3164398 157 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 156 -> 227 Target range: 1946834 -> 1946621 157 : SerAspArgAlaLeuProPheAsnLeuTrpIleAspPheProValGlyLeuSerPr : 175 |||:!!||| !||| !|||... !|||||| !!:! ! !..!! !:!!|| SerAsnArgLysLeuMetPheArgAlaTrpIleProTyrAspTyrSerProAlaPr 1946834 : AGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACGATTACTCCCCTGCGCC : 1946780 176 : oTyrPheGluLeuLeuPheIleIleGlnIleLeuCysValTyrHisValAlaThrC : 194 | !||| ||| !|||:!! !||| !:!!..!!.! !..!|||! oIlePheIleLeuThrPheValHisGlnAlaIleAlaAlaThrIleCysCysThrS 1946779 : CATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCGACGATATGTTGCACTT : 1946723 195 : ysTyrIleCysPheAspAsnLeuLeuCysIleValAsnLeuHisValAlaGlyGln : 212 !:!! ! ! |||::!|||! ! ! !:!! :!!:!!:!! ! !!||| erSerValThrValAspSerLeuTyrThrGlyLeuLeuIleAsnIleTyrCysGln 1946722 : CGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTGATTAATATCTACTGCCAG : 1946669 213 : PheArgIleLeuGlnHisArgLeuLysAsnLeuValAlaAspGlu : 227 |||..!||||||:!!|||||||||!:!|||:!! !.!!!!::!! PheGluIleLeuGluHisArgLeuArgAsnValLysThrGluGln 1946668 : TTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAACTGAGCAG : 1946622 vulgar: AfOr75P 156 227 . KQ414661.1 1946834 1946621 - 103 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946622 1946834 103 - . gene_id 1 ; sequence AfOr75P ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946622 1946834 . - . KQ414661.1 exonerate:protein2genome:local exon 1946622 1946834 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1946622 1946834 103 - . alignment_id 1 ; Query AfOr75P ; Align 1946835 157 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr70 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 760 Query range: 2 -> 304 Target range: 1947382 -> 1946047 3 : ValGlnThrLeuGlnTrpThrArgPheLeuLeuSerValCysGlyCysValProPr : 21 :!!.....!|||:!!! ||| !.!!||||||!.!:!!! !|||||| !! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 1947382 : ATGAGCGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTATCTGCC : 1947328 22 : oThrSerTrpLysSerSerPheLysLysSerLeuTyrAsnIleTyrThrLeuValI : 40 | !||||||! !!!! !!|||:!!!:!|||||||||||||||||| !::: oHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheS 1947327 : CCATTCGTGGACAACACCGTTCGAAAGGTCTTTGTACAATATCTACGGGGtgttct : 1947271 41 : leTrpLeuLeuIleLeuSerLeuValSerThrGlnIleLeuAspIleIleIleAsn : 58 :::||||||::: !||||||||| !:!!||||||||||||:!! |||||| erPheLeuLeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIleAsn 1947270 : cctttcttcttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCAAC : 1947217 59 : ValLysAsnLysAsnGluPheIleGluAsnPheTyrIleThrLeuValValPheVa : 77 |||:!!!:!:!!:!!!!:|||! :::|||||| :::||| !|||||||||:! ValGluSerGlnAspAspPheSerAspAsnPheSerValThrAlaValValPheLe 1947216 : GTGGAGAGCCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTTCT : 1947160 78 : lThrSerCysLysMetThrIleIleLeuArgTyrArgLysAsnIleLeuSerLeuI : 96 !|||!!!! !|||:!::!!|||:!!|||! ! ||| !|||.!!:!!! !|||| uThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuI 1947159 : CACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGA : 1947103 97 : leAspAspLeuGlnHisGluProPheSerProIleThrHisGluGluAsnGluIle : 114 ||||| ||||||:!!:!!||||||||||||:!: ! ||||||||||||||| leAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIle 1947102 : TCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATT : 1947049 115 : ArgThrLysPheAsnLysMetAsn{Gl} >>>> Target Intron 1 >>>> : 123 |||.!!||||||.!.|||!!:!.!{||} 107 bp ArgAlaLysPheGluLysIleThr{Gl}++ + 1947048 : AGAGCGAAATTCGAGAAGATCACC{GA}gt.........................a : 1946915 124 : {u}ArgThrSerIleCysTyrThrIleLeuValLeuValSerAlaThrTrpIleP : 141 {|} !!!.!!!!||| !!||| !! |||:::|||:::|||..! !!::|||! +{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleT 1946914 : g{A}TGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATAT : 1946861 142 : heValArgSerPhePheThrAspPheLysLysArgLysLeuThrPheArgAlaTrp : 159 :!|||||||||.!!!!.! !||||||!..!!.|||||||||! !|||||||||||| yrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrp 1946860 : ACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGG : 1946807 160 : LeuProTyrAspTyrSerGluLeuLeuProPheThrLeuSerTyrValHisGlnAl : 178 :!!||||||||||||||| !! ! !|||! !|||!!!!:!||||||||||| IleProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAl 1946806 : ATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGC : 1946750 179 : aThrThrSerMetPheCysSerCysGlnAsnIleSerCysAspThrLeuPheAlaG : 197 |! !.!!:!!! !.!.|||!!! !..!!:!:!!!!! |||:!!|||!:!.!!| aIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrG 1946749 : TATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTG : 1946693 198 : lyPheLeuValGlnIleTyrCysGlnPheGluIleLeuGluGluArgLeuLysAsn : 215 ||!!.|||:!!.!.|||||||||||||||||||||||||||.!.||||||!:!||| lyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsn 1946692 : GCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAAC : 1946639 216 : ValGlnGlnAspGluSerAsnTyrSerAlaLysGlnCysValArgHisTyrHisGl : 234 |||:!! !!::!!..!:!! |||!.!|||||||||!.!!:!|||:!! !!!: ValLysThrGluGlnAspAsp---SerValLysGlnCysAlaGlnHisHisAspAr 1946638 : GTTAAAACTGAGCAGGATGAC---TCTGTGAAGCAATGTGCTCAACATCACGATCG : 1946585 235 : nIleTyr{Ly} >>>> Target Intron 2 >>>> {s}PheSerArgThrL : 242 :||||||{:!} 325 bp {!}||||||!:!! !: gIleTyr{Gl}++ ++{n}PheSerLysLysV 1946584 : TATATAC{CA}gt.........................ag{A}TTTTCGAAAAAGG : 1946236 243 : euAsnGluLysPheLysValIleLeuPheLeuGlnPheCysAlaIleSerPheIle : 260 !!||||||:!!||||||:!!||||||.!!! !||||||||| !! !! !! :!: alAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerVal 1946235 : TGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTG : 1946182 261 : LeuCysPheAsnLeuTyrArgMetThrThrIleThrMetIleProLysLeuLeuGl : 279 :!!|||||||||||||||||||||||| !|||! !||| |||...:::|| IleCysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGl 1946181 : ATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcga : 1946125 280 : uAlaSerLeuTyrLeuValArgValLeuValGlnIleLeuTyrTyrCysTrpPheS : 298 | !||||||! ! !! !!..!:!!..!||||||!!!||||||||||||!:!. uIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrG 1946124 : aatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACG : 1946068 299 : erAsnGluValLysLeuLys : 304 !!|||||||||||| !||| lyAsnGluValLysAspLys 1946067 : GCAACGAAGTGAAAGATAAG : 1946048 vulgar: AfOr70 2 304 . KQ414661.1 1947382 1946047 - 760 M 120 360 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 99 297 G 1 0 M 13 39 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946048 1947382 760 - . gene_id 1 ; sequence AfOr70 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1947021 1947382 . - . KQ414661.1 exonerate:protein2genome:local exon 1947021 1947382 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1947019 1947020 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946914 1947020 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1946914 1946915 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946575 1946913 . - . KQ414661.1 exonerate:protein2genome:local exon 1946575 1946913 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local splice5 1946573 1946574 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946250 1946574 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1946250 1946251 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946048 1946249 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946249 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1946048 1947382 760 - . alignment_id 1 ; Query AfOr70 ; Align 1947383 3 360 ; Align 1946913 124 297 ; Align 1946616 224 39 ; Align 1946249 238 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr100 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 139 -> 190 Target range: 45964 -> 45814 140 : ThrLeuLeuValAlaMetValIlePhePheSerValProLeuIlePheProIleLeuAsp : 159 |||:!!! !:!!!.!:!! !:!:|||! !!!!!.!||||||||| !||||||||| ThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeuAsp 45964 : ACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTGGAC : 45907 160 : IleValTyrProLeuAsnGluThrArgProArgGlnGlnLeuTyrLysValAsnTyrLeu : 179 :!!:!!! ||||||||||||:!!||||||||| ! ! !||||||!.! |||! ! LeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAla---TyrCys 45906 : CTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCC---TACTGT : 45850 180 : IlePheAsnHisGluAspTyrTyrPheTyrVal : 190 !||||||! !!:|||||||||!:!|||||| TyrPheAsnProAspAspTyrTyrTyrTyrVal 45849 : TACTTCAATCCGGACGACTACTATTATTACGTC : 45815 vulgar: AfOr100 139 190 . KQ414772.1 45964 45814 - 121 M 37 111 G 1 0 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45815 45964 121 - . gene_id 1 ; sequence AfOr100 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45815 45964 . - . KQ414772.1 exonerate:protein2genome:local exon 45815 45964 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 45815 45964 121 - . alignment_id 1 ; Query AfOr100 ; Align 45965 140 111 ; Align 45854 178 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr97P Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 129 Query range: 153 -> 231 Target range: 20559 -> 20325 154 : LeuPheLeuLeuLeuProLeuPheProSerPheLeuAspValValPheProLeuAsnGlu : 173 :!!||||||! !:!!|||!!! |||! !.!!||||||:!! ! |||||||||:!! IlePheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsnLys 20559 : ATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAACAAA : 20502 174 : ThrArgGlnGlnLeuGlnIlePheLysMetLysTyrPheIleLysGluAspGlnTyrPhe : 193 ||||||:!!!:::!! :!!!:! ! ! |||!::!!: ! !!:||||||!:! ThrArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyr 20501 : ACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTAC : 20442 194 : TyrProIleTyrPheHisSerValTrpSerSerPheValIleIleMetIleThrValThr : 213 !!!: .!.|||! !:!!!:: ! !.!!:!!:!! !:!:||| ! !.!! MetIleMetIleIleHisIleMetPheValValIleMetValCysValIlePheCysAla 20441 : ATGATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGTGCT : 20382 214 : IleAspSerLeuTyrMetLeuIleIleHisHisAlaSerGlyLeuPheAlaIle : 231 !|||! ! !|||:!!! ! !:!:!!.||||||!!!||||||!!.|||:!! CysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaVal 20381 : TGCGACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: AfOr97P 153 231 . KQ414772.1 20559 20325 - 129 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20559 129 - . gene_id 1 ; sequence AfOr97P ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20559 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20559 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20326 20559 129 - . alignment_id 1 ; Query AfOr97P ; Align 20560 154 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr100 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 139 -> 190 Target range: 33711 -> 33561 140 : ThrLeuLeuValAlaMetValIlePhePheSerValProLeuIlePheProIleLeuAsp : 159 |||:!!! !:!!!.!:!! !:!:|||! !!!!!.!||||||||| !||||||||| ThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeuAsp 33711 : ACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTGGAC : 33654 160 : IleValTyrProLeuAsnGluThrArgProArgGlnGlnLeuTyrLysValAsnTyrLeu : 179 :!!:!!! ||||||||||||:!!||||||||| ! ! !||||||!.! |||! ! LeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAla---TyrCys 33653 : CTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCC---TACTGT : 33597 180 : IlePheAsnHisGluAspTyrTyrPheTyrVal : 190 !||||||! !!:|||||||||!:!|||||| TyrPheAsnProAspAspTyrTyrTyrTyrVal 33596 : TACTTCAATCCGGACGACTACTATTATTACGTC : 33562 vulgar: AfOr100 139 190 . LHQN01017803.1 33711 33561 - 121 M 37 111 G 1 0 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33562 33711 121 - . gene_id 1 ; sequence AfOr100 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33562 33711 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33562 33711 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 33562 33711 121 - . alignment_id 1 ; Query AfOr100 ; Align 33712 140 111 ; Align 33601 178 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr100 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 140 -> 239 Target range: 26246 -> 25952 141 : LeuLeuValAlaMetValIlePhePheSerValProLeuIlePheProIleLeuAspIle : 160 :!!! !:!!..! !.!:!!|||.!.!!!:!!|||!!!:!:! ||||||||||||||| IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIle 26246 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATC : 26189 161 : ValTyrProLeuAsnGluThrArgProArgGlnGlnLeuTyrLysValAsnTyrLeuIle : 180 :!! |||||||||||||||||| !!||| ! :!!||| !!.! !!|||!!!:!! LeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal 26188 : CTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC : 26129 181 : PheAsnHisGluAspTyrTyrPheTyrValTyrPheGlnLeuValTrpSerSerPheVal : 200 :!!.!.!!: ! |||:!!!:!! :!! !!.:!! ! ! ! ! :!! ---AspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMet 26128 : ---GACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATG : 26072 201 : CysValIleIleIleIleIlePheAspTrpLeuTyrIleLeuIleIleHisHisAsnSer : 220 !:!! !:!!.!! ! !! !||| !|||:!:! ! !:!:!!.||| !!!! LeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCys 26071 : CTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGC : 26012 221 : GlyMetPheThrValCysGlyTyrGlnIleGlnLysIlePheThrGluGluAlaPhe : 239 |||:!!!!..!!:!!...|||!! !:!!||| ! !!!.! !|||.!.!.!||| GlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGluAsnGlyPhe 26011 : GGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAATGGTTTT : 25953 vulgar: AfOr100 140 239 . LHQN01017803.1 26246 25952 - 115 M 40 120 G 1 0 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25953 26246 115 - . gene_id 2 ; sequence AfOr100 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25953 26246 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25953 26246 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25953 26246 115 - . alignment_id 2 ; Query AfOr100 ; Align 26247 141 120 ; Align 26127 182 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr97P Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 157 Query range: 153 -> 233 Target range: 26228 -> 25988 154 : LeuPheLeuLeuLeuProLeuPheProSerPheLeuAspValValPheProLeuAsnGlu : 173 ||||||:!!! !||||||!!! ! !! !!.!!||||||:!!:!!.!.|||||||||||| LeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGlu 26228 : CTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAG : 26171 174 : ThrArgGlnGlnLeuGlnIlePheLysMetLysTyrPheIleLysGluAspGlnTyrPhe : 193 |||||| !!:!||| :!!!:! ! ! ||||||:!! ! ||||||:!!||| ! ThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHis 26170 : ACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCAT : 26111 194 : TyrProIleTyrPheHisSerValTrpSerSerPheValIleIleMetIleThrValThr : 213 ||| !||| |||! ! ! ! ! ! :!!:!!||| :!! ! !.!! TyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 26110 : TACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 26051 214 : IleAspSerLeuTyrMetLeuIleIleHisHisAlaSerGlyLeuPheAlaIleCysGly : 233 !|||:!! !|||:!!! ! !:!:!!.||||||!!!||||||!!.||||||...||| CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 26050 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 25991 vulgar: AfOr97P 153 233 . LHQN01017803.1 26228 25988 - 157 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26228 157 - . gene_id 1 ; sequence AfOr97P ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26228 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26228 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26228 157 - . alignment_id 1 ; Query AfOr97P ; Align 26229 154 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 203 Query range: 173 -> 391 Target range: 4394627 -> 4395868 174 : SerProTyrPheGluIleLeuPheThrIleGlnIleLeuCysValTyrHisValGl : 192 |||||| !||||||||| !||| ! !||||||:!!... ! ! !!. SerProArgPheGluIleAlaPheLeuCysGlnIleValAlaSerMetIleCysAl 4394628 : TCTCCTCGCTTCGAGATCGCTTTCCTTTGTCAAATCGTAGCATCTATGATCTGCGC : 4394682 193 : yValCysTyrIleCysPheAspAsnLeuLeuCysIleValAsnLeuHisValAlaG : 211 !!.!... ! ! !!!!.||| !!!! ! !..!! !|||||||||:!!| aAlaAlaIleSerGlyLeuAspAlaThrPheMetThrThrIleLeuHisValSerG 4394683 : AGCCGCGATCTCAGGCTTGGACGCGACGTTTATGACCACGATTCTACACGTGTCTG : 4394739 212 : lyGlnPheArgIleLeuGlnHisArgLeuArgSerLeuSerSerAlaGluProGly : 229 ||||||||!:!:!::!!.!.... !!:!!!!!!.!:!!.!!! !! ! ! ! ! lyGlnPheLysLeuIleAsnArgTrpIleSerLysIleGlyIleGluIleAsnIle 4394740 : GTCAATTCAAATTGATCAACAGATGGATCAGTAAGATTGGAATAGAGATAAATATC : 4394793 230 : AspArgArgAspAlaArgLysLeuTyrAlaLysLeuLysSerCysValLeuHisHi : 248 !!:! ! ! !! !!||||||||| ! |||!!.|||! !.!|||:!!! !||||| GluProAspTyrProArgLysLeuLysAlaAsnLeuIleLysCysIleArgHisHi 4394794 : GAGCCCGATTATCCGCGAAAATTAAAAGCGAATCTGATCAAATGCATTCGCCATCA : 4394850 249 : sGlnAlaLeuThr{Ly} >>>> Target Intron 1 >>>> {s}TyrCysL : 256 |||| !:!!! !{!!} 131 bp {.} ! ! sGlnArgMetIle{As}++ ++{n}ValValA 4394851 : CCAACGAATGATA{AA}gt.........................ag{C}GTTGTGA : 4395005 257 : ysGlnLeuGluAsnIlePheThrIleIleValLeuGlyGlnValLeuPheLeuAla : 274 !....:::...|||:::...||| !|||:!!!!! !|||:!!||| !!.! snAspValAsnAsnLeuLeuThrProIleIlePheMetGlnLeuLeuThrSerGly 4395006 : ACGacgtgaataatttattaacaccCATCATTTTCATGCAACTTCTTACGAGCGGA : 4395059 275 : ValValIleCysLeuValGlyPheGlnLeuPheLeuMetAspThrProAlaSerAr : 293 :!!! !||||||||| !|||||| !:!!.!! !! ! !||| !.!!!! IleGluIleCysLeuSerGlyPheAlaValIleAspAsnGlyThr---GlyThrAs 4395060 : ATAGAGATTTGTTTGAGTGGATTCGCGGTGATCGATAACGGCACC---GGTACCGA : 4395113 294 : gLysValSerLeuValLeuAsnPheAlaGlyThrLeuCysGlnLeuLeuMetPheT : 312 ! :!!!.!!!!|||! ! !!!!..!!..!! ! ! |||||||||:!:!:: pLeuLeuLysPheValSerTyrLeuThrSerMetGlyValGlnLeuLeuLeuTrpC 4395114 : TCTTCTCAAATTTGTGTCTTATTTAACCTCGATGGGGGTGCAACTTTTGCTATGGT : 4395170 313 : hrTyrSerCysAspAspLeuIleGlnGluSerValLysValGlyAsnAlaIlePhe : 330 !!:: !! !!!!: !|||:!!|||||||||:!!:!!:!!|||:!!!.!:!!!:! ysTrpProGlyGluIleLeuValGlnGluSerLeuGluIleGlyHisValValTyr 4395171 : GTTGGCCTGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGTCATGTAGTCTAT : 4395224 331 : SerGlyProTrpAlaSerLeuProMetAspGluValGlyArgValLeuArgLysAs : 349 !!:!:!!||| ! !!.!.:!! !! !:!!! !!:!|||.! ------------LeuAsnIleProTrpTyrAsnLeuProProIleTyrGlnLysGl 4395225 : ------------CTAAATATACCATGGTACAATTTACCACCGATTTATCAGAAACA : 4395269 350 : nLeuValIleValIleMetArgSerHisArgValCysCysLeuThrAlaGlyLysP : 368 .||| !:!::!!|||!!:|||:!!!!.!:! !||| !!:!!|||||| !! !| nLeuCysLeuMetIleIleArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrP 4395270 : ACTTTGCCTGATGATCATTAGGGCCCAACAGTATTGCAGCATTACGGCATTAACGT : 4395326 369 : hePheProValSerLeuGluThrSerThrAla >>>> Target Intron 2 > : 379 || !!:!!|||:!!.!.|||! !|||||| 471 bp heGlnThrLeuSerIleHisThrLeuThrAla++ 4395327 : TTCAAACGTTGTCTATTCACACGTTAACAGCCgt...................... : 4395361 380 : >>> IleLeuSerThrAlaMetSerTyrPheThrLeuLeuLys : 391 :!!!!!!:!|||||| ||||||||||||||||||::! ++ValPheAsnThrAlaAlaSerTyrPheThrLeuLeuArg 4395362 : ...agGTATTCAATACAGCTGCTTCGTATTTTACTTTGCTGCGA : 4395868 vulgar: AfOr84 173 391 . KQ414784.1 4394627 4395868 + 203 M 79 237 S 0 2 5 0 2 I 0 127 3 0 2 S 1 1 M 36 108 G 1 0 M 40 120 G 4 0 M 44 132 5 0 2 I 0 467 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4394628 4395868 203 + . gene_id 1 ; sequence AfOr84 ; gene_orientation + KQ414784.1 exonerate:protein2genome:local cds 4394628 4394866 . + . KQ414784.1 exonerate:protein2genome:local exon 4394628 4394866 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4394867 4394868 . + . intron_id 1 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4394867 4394997 . + . intron_id 1 KQ414784.1 exonerate:protein2genome:local splice3 4394996 4394997 . + . intron_id 0 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394998 4395358 . + . KQ414784.1 exonerate:protein2genome:local exon 4394998 4395358 . + . insertions 0 ; deletions 5 KQ414784.1 exonerate:protein2genome:local splice5 4395359 4395360 . + . intron_id 2 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4395359 4395829 . + . intron_id 2 KQ414784.1 exonerate:protein2genome:local splice3 4395828 4395829 . + . intron_id 1 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4395830 4395868 . + . KQ414784.1 exonerate:protein2genome:local exon 4395830 4395868 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local similarity 4394628 4395868 203 + . alignment_id 1 ; Query AfOr84 ; Align 4394628 174 237 ; Align 4394999 254 108 ; Align 4395107 291 120 ; Align 4395227 335 132 ; Align 4395830 379 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr97P Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 146 -> 231 Target range: 481980 -> 482235 147 : ValLeuLeuSerAlaLeuLeuLeuPheLeuLeuLeuProLeuPheProSerPheLeuA : 166 :!!:!!! ! !!:!!:!!|||:!!.!.:!!|||! !! !:!!! !! ! !!|||| LeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuA 481981 : TTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAG : 482038 167 : spValValPheProLeuAsnGluThrArgGlnGlnLeuGlnIlePheLysMetLysTy : 185 |||||:!! !!|||||||||||||||||| !!!.! ! ! ! ..!|||:!!|| spValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMetGluTy 482039 : ACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTA : 482095 186 : rPheIleLysGluAspGlnTyrPheTyrProIleTyrPheHisSerValTrpSerSer : 204 ||||||| ! :!!.!.:!!|||! ! !||| ||||||..! !!::|||! ! rPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPhe 482096 : CTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTT : 482152 205 : PheValIleIleMetIleThrValThrIleAspSerLeuTyrMetLeuIleIleHisH : 224 .!!|||:!! !! !|||! !||| !|||!!:!!!||| !:!::!! :!!.!.| LeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluH 482153 : CTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAAC : 482212 225 : isAlaSerGlyLeuPheAlaIle : 231 |||||:!!.!!||||||.!!:!! isAlaAlaSerLeuPheThrLeu 482213 : ACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: AfOr97P 146 231 . KQ414815.1 481980 482235 + 134 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481981 482235 134 + . gene_id 1 ; sequence AfOr97P ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481981 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481981 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481981 482235 134 + . alignment_id 1 ; Query AfOr97P ; Align 481981 147 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr97P Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 146 -> 233 Target range: 485668 -> 485932 147 : ValLeuLeuSerAlaLeuLeuLeuPheLeuLeuLeuProLeuPhe<->ProSerPheL : 165 |||:!!:!!.!! !!! !|||||| ! |||:!!||| !:!!||| !|||.!!| ValIleIleGlyProSerLeuLeuValLeuIleLeuGlyIlePheAsnAsnSerIleL 485669 : GTAATTATCGGTCCATCGTTACTTGTGCTGATTCTTGGTATATTTAACAACAGTATTC : 485726 166 : euAspValValPheProLeuAsnGluThrArgGlnGlnLeuGlnIlePheLysMetLy : 184 |||||:!!:!!.!!||||||||| ! ||||||! !!:! ! !.!.!!. !:! euAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnSerGl 485727 : TGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACTCGGA : 485783 185 : sTyrPheIleLysGluAspGlnTyrPheTyrProIleTyrPheHisSerValTrpSer : 203 !:!!|||:!! ! :!!.!.:!!||||||||||||||| ||| !||| ! ! uHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLeuPhe 485784 : ACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCTCTTC : 485840 204 : SerPheValIleIleMetIleThrValThrIleAspSerLeuTyrMetLeuIleIleH : 223 !.!!:!! ! !!::!! !:!!!:! ::: ||| ||| !||||||! ValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIleIleG 485841 : GTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATAATAC : 485900 224 : isHisAlaSerGlyLeuPheAlaIleCysGly : 233 !.|||.!!!!!||||||!:!.!!||| !||| lnHisThrCysGlyLeuTyrThrIleValGly 485901 : AGCACACCTGTGGTTTGTATACAATCGTTGGG : 485932 vulgar: AfOr97P 146 233 . KQ414815.1 485668 485932 + 134 M 15 45 G 0 3 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485669 485932 134 + . gene_id 2 ; sequence AfOr97P ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485669 485932 . + . KQ414815.1 exonerate:protein2genome:local exon 485669 485932 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485669 485932 134 + . alignment_id 2 ; Query AfOr97P ; Align 485669 147 45 ; Align 485717 162 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr97P Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 152 -> 231 Target range: 457174 -> 457411 153 : LeuLeuPheLeuLeuLeuProLeuPheProSerPheLeuAspValValPheProLeuA : 172 |||:!!.!! ! !|||! !|||||||||! !!!.||||||:!!||| !!||||||| LeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuA 457175 : CTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGA : 457232 173 : snGluThrArgGlnGlnLeuGlnIlePheLysMetLysTyrPheIleLysGluAspGl : 191 |||||:!!|||! ! ! !.!!! ! !:!!||||||:!! ! ! ! :! snGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLy 457233 : ACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAA : 457289 192 : nTyrPheTyrProIleTyrPheHisSerValTrpSerSerPheValIleIleMetIle : 210 !|||.!.:!! !||| ! |||! !:!! !!!! !.!.:!! !! ! sTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThr 457290 : GTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACG : 457346 211 : ThrValThrIleAspSerLeuTyrMetLeuIleIleHisHisAlaSerGlyLeuPheA : 230 !..!.!!! !!!:|||||| !!!: !! !:!!! |||!.!!!!||||||||| LeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheL 457347 : TTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCA : 457406 231 : laIle : 231 !:!! ysLeu 457407 : AGCTT : 457411 vulgar: AfOr97P 152 231 . KQ414815.1 457174 457411 + 103 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457175 457411 103 + . gene_id 3 ; sequence AfOr97P ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457175 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457175 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457175 457411 103 + . alignment_id 3 ; Query AfOr97P ; Align 457175 153 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr97P Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 146 -> 231 Target range: 475515 -> 475770 147 : ValLeuLeuSerAlaLeuLeuLeuPheLeuLeuLeuProLeuPheProSerPheLeuA : 166 :!!:!!! ! !!.!!:!!!!! !.!.:!!||||||! !!!!! !!!.!.!!|||| LeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerSerLysIleLeuA 475516 : CTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGTCTAAGATCCTTG : 475573 167 : spValValPheProLeuAsnGluThrArgGlnGlnLeuGlnIlePheLysMetLysTy : 185 || !:!!!!.||||||||||||:!!|||! ...! !...:!:...:::::::::|| spSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleArgIleGluTy 475574 : ATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaatagaata : 475630 186 : rPheIleLysGluAspGlnTyrPheTyrProIleTyrPheHisSerValTrpSerSer : 204 |||||||...|||.!.:!!|||||||||! !! ! .!!:!!..!..! !!!! ! rPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrValThrIle 475631 : tttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGTAACGATC : 475687 205 : PheValIleIleMetIleThrValThrIleAspSerLeuTyrMetLeuIleIleHisH : 224 .!!:!!.!! !! ! !|||.!!! !!!::!!:!!!:!! :!! :!:!!.| LeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrpLeuGlnH 475688 : CTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGGTTGCAAC : 475747 225 : isAlaSerGlyLeuPheAlaIle : 231 ||..!! ...|||||| ||| isCysIleSerLeuPheGluIle 475748 : ATTGCATaagtttatttgaaatt : 475770 vulgar: AfOr97P 146 231 . KQ414815.1 475515 475770 + 103 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475516 475770 103 + . gene_id 4 ; sequence AfOr97P ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475516 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475516 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475516 475770 103 + . alignment_id 4 ; Query AfOr97P ; Align 475516 147 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr74/86like_1 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 536 Query range: 109 -> 363 Target range: 2873 -> 6477 110 : PheTyrValAsnTyrGlyLysAsnLysSerGluArgThrLeuProValArgMetTrpIleAs : 130 |||! !.!!:: |||||||||:::|||!!:||| !||| !|||!.!.!.|||||||| PheSerAlaSerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAs 2874 : TTCTCAGCAAgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGA : 2934 131 : pIleProLeuSerThrThrProTyrTyrGluLeuLeuPheAlaSerGln >>>> Target : 147 |:!:|||:!!!!!! !|||||||||||||||:::||||||... !||| 4 pLeuProIleThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2935 : CCTGCCGATAACCATCACACCATactatgaaatattatttacgaTACAGgt........... : 2987 148 : Intron 1 >>>> LeuIleAlaLeuGlnGlnIleGlyLeuThrTyrLeuSerAsnAspA : 162 06 bp :!!.!! !:!!..! ! :!! !!:!!!:!||||||!!!! !|||| ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspA 2988 : ..............agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACA : 3436 163 : snTyrLeuCysValLeuSerMetHisLeuAsnTyrGlnPheArgIleLeuGlnHisArgMet : 182 ||!:!||||||:!!:!!!:!:!:||| ! ! !||||||||||||||||||:!!|||:!! snPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeu 3437 : ATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTG : 3496 183 : LeuThrIleTrpSer<-><-><-><->AsnIleLysGluGlnLysAspIleValSerCysTh : 199 ! !!.!:!:!! .!! !:: ||| ...||| !||| !:! SerAsnValCysGlyAlaAsnGluArgSerAspLysIleSerLysLysThrProSerAsnSe 3497 : TCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTC : 3559 200 : rGluLysCysTyrLysAlaLeuLysLysCysIleLysGlnHisGlnSerLeuLeuLysTyrC : 220 !!!::!!|||||| !!!!|||!!.||||||:!!|||||||||:!!|||:!!:!!|||| rAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrC 3560 : GGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACT : 3622 221 : ysLysLysLeuAspTyrValTyrThrLeuThrIleLeuAsnHisValIleValPheSerLeu : 240 ||!!.||||||.!. ! |||!:! !:!! !:!:||| !!.|||:!::!!||||||||| ysAsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeu 3623 : GTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTG : 3682 241 : IleMetCysIleAlaPheTyrGluIleLeuIle >>>> Target Intron 2 >>>> : 252 :!!||||||:!!! ! ||| :!::!!!!: 457 bp LeuMetCysLeuAspGlyTyr---LeuValMet++ ++ 3683 : TTAATGTGCCTCGATGGATAT---TTGGTGATGgt.........................ag : 4170 253 : AlaAspValProLeuThrThrArgPheIlePheValPheSerGlyIleGlyIleLeuValHi : 272 ! !|||..!|||:!!! ! !|||.!!! !|||:!!||| ! !! ||| !||| !!! GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGl 4171 : GAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCA : 4232 273 : sIleLeuPhePheThrTyrIleCysGlyGluLeuIleGluGluSerGlyAsnValGlyLeuA : 293 .:!:|||.!.|||||||||! !|||! ! ||||||..!|||||| !||||||!.! !| nLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnA 4233 : ACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATG : 4295 294 : laThrTyrSerGlyTrpTrpThrThrLeuProMetAsnLysThrGlyLysMetLeuArgAsn : 313 ||! !|||..! !!! !|||! ! !|||||||||:!!!:!:!!|||::!|||||||||!!. laIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLys 4296 : CTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAA : 4355 314 : AspMetLysIleIleMetMetLysCysMetArgProCysTyrLeuSerAlaGlyGlyPhePh : 334 |||:!!! !.!!:!!!!: !:!! !! !||||||! !|||!!!||| !!|||||||| AspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePh 4356 : GATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTT : 4418 335 : eProValSerLeuGluThrSerThrSer >>>> Target Intron 3 >>>> LeuIl : 345 |||||||||||||||||||! !|||||| 1970 bp :!!|| eProValSerLeuGluThrTyrThrSer++ ++ValIl 4419 : CCCTGTGTCACTGGAAACGTACACTTCGgt.........................agGTTAT : 6421 346 : eSerSerThrValSerTyrPheThrLeuLeuArgAspAsnValGluGluSerAsn : 363 ||||!!!.!!||||||||||||||||||||||||.!...!:!!|||!!:|||||| eSerThrAlaValSerTyrPheThrLeuLeuArgGlnArgIleGluAspSerAsn 6422 : AAGTACAGCAGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAGGACAGCAAT : 6477 vulgar: AfOr74/86like_1 109 363 . KQ414828.1 2873 6477 + 536 M 37 111 5 0 2 I 0 402 3 0 2 M 41 123 G 0 12 M 60 180 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2874 6477 536 + . gene_id 1 ; sequence AfOr74/86like_1 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2874 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2874 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 12 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6477 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6477 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2874 6477 536 + . alignment_id 1 ; Query AfOr74/86like_1 ; Align 2874 110 111 ; Align 3391 147 123 ; Align 3526 188 180 ; Align 3706 249 9 ; Align 4172 252 276 ; Align 6418 344 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr74/86like_1 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 307 Query range: 25 -> 185 Target range: 21885 -> 22842 26 : PheAsnTyrCysMetPheIleIleSerAsnLeuLeuIleValIleLeuSerLeuSerLys : 45 |||... !||||||!:!!!: !!!!||| !||| !:!!:!!|||..!:!!! !||| PheGlnValCysMetTyrMetAlaCysAsnSerLeuAlaLeuValLeuAspIleIleLys 21886 : tttcaggTTTGCATGTACATGGCATGCAACAGTTTAGCCCTGGTTTTGGATATAATCAAG : 21943 46 : PheIleIleLeuSerPheArgArgArgGluPheValLysIleIleLeuTyrAlaGlnLys : 65 .!!.!!:!!||| ! ! |||!:!!:!:!!|||:!! :!:||| !||| !|||||| IlePheValLeuLeuValArgLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLys 21944 : ATTTTCGTCCTACTCGTACGGAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAG : 22003 66 : AsnPheTrpHisTyrLysTyrGluAsnTyrGluLysLeuLeuPheMetLysCysGlnThr : 85 ||||||||||||! !!.|||!!:.!. !!|||!!.! !:!!.!! ! ...:!! ! AsnPheTrpHisLeuAsnTyrAspGlnAspGluAsnSerIleIleAlaHisAlaLysArg 22004 : AATTTTTGGCATTTGAACTACGACCAGGACGAGAATTCTATTATCGCACACGCGAAACGA : 22063 86 : PheCysLysPheTrpThrIleIleAlaTyrPhePheValGlnSerCysIlePhePheTyr : 105 |||! !:!!::..! !:!! !! |||! ! !|||||| :!!|||! !||| ThrCysIleTyrPheValCysValPheSerPheCysSerGlnSerThrValPheSerTyr 22064 : ACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTAT : 22123 106 : ValIleThrProPheTyr{V} >>>> Target Intron 1 >>>> {al}AsnTyr : 114 :!!|||! !|||||| { } 170 bp { !}||| ! IleIleArgProPheVal{S}++ ++{er}AsnLeu 22124 : ATAATAAGGCCATTTGTA{T}gt.........................ag{ca}AATCTT : 22320 115 : GlyLysAsnLysSerGluArgThrLeuProValArgMetTrpIleAspIleProLeuSer : 134 |||||||||:!!|||!!:||| !! ! ! ! !||||||:!!|||:!!||||||||| GlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuProLeuSer 22321 : GGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCATTATCC : 22380 135 : ThrThrProTyrTyrGluLeuLeuPheAlaSerGln >>>> Target Intron 2 > : 147 ..!|||||||||||||||::: ::! !! !||| 307 bp ValThrProTyrTyrGluIleThrTyrIleIleGln++ 22381 : GTAACAccatattatgaaattacttACATAATACAGgt...................... : 22421 148 : >>> LeuIleAlaLeuGlnGlnIleGlyLeuThrTyrLeuSerAsnAspAsnTyrLeuC : 165 !:!!:!!:!! ! |||:!!.!! ! !||||||!!! ||| ... ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIlePheP 22422 : ...agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatttttt : 22780 166 : ysValLeuSerMetHisLeuAsnTyrGlnPheArgIleLeuGlnHisArgMetLeuThrI : 185 :::||| :!:|||:!! ! !||||||||||||||||||:!!|||!!: !!.!: heIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnV 22781 : tcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATG : 22840 186 : le : 185 !: al 22841 : TG : 22842 vulgar: AfOr74/86like_1 25 185 . KQ414828.1 21885 22842 + 307 M 86 258 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 34 102 5 0 2 I 0 303 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21886 22842 307 + . gene_id 2 ; sequence AfOr74/86like_1 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 21886 22144 . + . KQ414828.1 exonerate:protein2genome:local exon 21886 22144 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22145 22146 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22145 22314 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22313 22314 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 22315 22418 . + . KQ414828.1 exonerate:protein2genome:local exon 22315 22418 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22419 22420 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22419 22725 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 22842 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 22842 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21886 22842 307 + . alignment_id 2 ; Query AfOr74/86like_1 ; Align 21886 26 258 ; Align 22317 113 102 ; Align 22726 147 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr74/86like_1 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 234 Query range: 251 -> 346 Target range: 12469 -> 12754 252 : AlaAspValProLeuThrThrArgPheIlePheValPheSerGlyIleGlyIleLeuVal : 271 |||:!!..! !!|||.!!! !||| !||||||:!!||| ! ! !||| !:!!||| AlaAsnThrSerLeuAlaArgArgSerIlePheMetPheLeuIleCysGlyAlaMetVal 12470 : GCTAATACTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTT : 12527 272 : HisIleLeuPhePheThrTyrIleCysGlyGluLeuIleGluGluSerGlyAsnValGly : 291 :!:!!!.!.|||||||||! !|||..! !:!!||||||:!!|||! !|||:!!!.! LeuLeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAla 12528 : TTATTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCT : 12587 292 : LeuAlaThrTyrSerGlyTrpTrpThrThrLeuProMetAsnLysThrGlyLysMetLeu : 311 !!!|||.!!||||||!.! |||||| !:!!|||||||||||||||||||||! !||| PheAlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeu 12588 : TTTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTA : 12647 312 : ArgAsnAspMetLysIleIleMetMetLysCysMetArgProCysTyrLeuSerAlaGly : 331 |||:!!|||:!!! !!!::!!!!: !!:!! !! ||| !|||! !|||!!!|||..! ArgHisAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsn 12648 : CGGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAAT : 12707 332 : GlyPhePheProValSerLeuGluThrSerThrSerLeuIleSer : 346 |||||||||||||||||||||||||||! !|||!!!:!!! !||| GlyPhePheProValSerLeuGluThrTyrThrThrValSerSer 12708 : GGATTTTTCCCTGTGTCCTTAGAAACTTATACTACGGTGAGTTCA : 12754 vulgar: AfOr74/86like_1 251 346 . KQ414828.1 12469 12754 + 234 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 12470 12754 234 + . gene_id 3 ; sequence AfOr74/86like_1 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 12470 12754 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12754 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 12470 12754 234 + . alignment_id 3 ; Query AfOr74/86like_1 ; Align 12470 252 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr74/86like_1 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 202 Query range: 111 -> 182 Target range: 17824 -> 18147 112 : ValAsnTyrGlyLysAsnLysSerGluArgThrLeuProValArgMetTrpIleAspIle : 131 ...||| |||||||||:::|||||||||! !|||||| !!!.!||||||:!!:!!:!: AlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpValAsnLeu 17825 : gcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTCAACTTG : 17882 132 : ProLeuSerThrThrProTyrTyrGluLeuLeuPheAlaSerGln >>>> Target I : 147 |||||||||! !|||||||||||||||::: |||::: ||| 110 ProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln++ 17883 : CCATTATCAATGACGCCATATTACgaaataactttttcattaCAGgt............. : 17932 148 : ntron 1 >>>> LeuIleAlaLeuGlnGlnIleGlyLeuThrTyrLeuSerAsnAspA : 162 bp ::!:!::!!||| ! !!.||||||:!!!:!|||!!!! |||| ++ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysPheAspA 17933 : ............aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgcttcgaca : 18085 163 : snTyrLeuCysValLeuSerMetHisLeuAsnTyrGlnPheArgIleLeuGlnHisArgM : 182 ||:::||||||::!:!!!:!:!!||| ! ! !|||||||||:!!||||||:!!|||| snPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnTyrArgM 18086 : attttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAATACCGAA : 18145 183 : et : 182 || et 18146 : TG : 18147 vulgar: AfOr74/86like_1 111 182 . KQ414828.1 17824 18147 + 202 M 35 105 5 0 2 I 0 106 3 0 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17825 18147 202 + . gene_id 4 ; sequence AfOr74/86like_1 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17825 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17825 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18147 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18147 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17825 18147 202 + . alignment_id 4 ; Query AfOr74/86like_1 ; Align 17825 112 105 ; Align 18040 147 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr74/86like_1 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 28 -> 109 Target range: 26927 -> 27170 29 : CysMetPheIleIleSerAsnLeuLeuIleValIleLeuSerLeuSerLysPheIleIle : 48 ||||||!:!!!: !.!!||| !||| !:!!:!!|||..!:!!! !|||.!!.!!! ! CysMetTyrMetAlaGlyAsnGlyLeuAlaMetValLeuAspIleIleLysIlePheThr 26928 : TGCATGTACATGGCTGGCAACGGTTTAGCCATGGTTTTGGATATAATCAAGATTTTCACC : 26985 49 : LeuSerPheArgArgArgGluPheValLysIleIleLeuTyrAlaGlnLysAsnPheTrp : 68 ||| ! ! !.!!:!!:!:!!|||:!! :!:||| !||| !||||||||||||||| LeuValValHisLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheTrp 26986 : CTAGTCGTACACAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTTTGG : 27045 69 : HisTyrLysTyrGluAsnTyrGluLysLeuLeuPheMetLysCysGlnThrPheCysLys : 88 |||! !!.|||!!:.!.||||||!!.! !:!!!!. :!!...:!! !.!.|||! HisLeuAsnTyrAspGlnTyrGluAsnSerValLeuAlaGlnAlaLysArgMetCysIle 27046 : CATTTGAACTACGATCAGTACGAGAATTCTGTTTTGGCACAGGCGAAACGAATGTGCATT : 27105 89 : PheTrpThrIleIleAlaTyrPhePheValGlnSerCysIlePhePheTyrValIleThr : 108 !:!!::..! ::: |||||| ||||||! :!!.!!! !|||:!!|||! ! TyrPheValCysValLeuSerPhePheSerGlnSerSerValLeuSerTyrIleIleArg 27106 : TACTTCGTGTGcgttttgtcatttttttctcaatctTCAGTTCTTTCCTATATCATAAGG : 27165 109 : Pro : 109 ||| Pro 27166 : CCA : 27170 vulgar: AfOr74/86like_1 28 109 . KQ414828.1 26927 27170 + 162 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26928 27170 162 + . gene_id 5 ; sequence AfOr74/86like_1 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 26928 27170 . + . KQ414828.1 exonerate:protein2genome:local exon 26928 27170 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 26928 27170 162 + . alignment_id 5 ; Query AfOr74/86like_1 ; Align 26928 29 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr74/86like_1 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 198 -> 254 Target range: 32978 -> 33146 199 : ThrGluLysCysTyrLysAlaLeuLysLysCysIleLysGlnHisGlnSerLeuLeuLys : 218 :!!||||||||||||! !!!!|||!!.||||||:!!|||||||||:!!|||:::::: SerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGlu 32979 : TCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTaattgaa : 33036 219 : TyrCysLysLysLeuAspTyrValTyrThrLeuThrIleLeuAsnHisValIleValPhe : 238 :::|||::: |||!!: ! |||!:!|||:!!! !:!!|||...!!.|||:!!:!!||| PheCysGluIleLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMetPhe 33037 : ttttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTAATGTTT : 33096 239 : SerLeuIleMetCysIleAlaPheTyrGluIleLeuIleAlaAspVal : 254 |||:!!|||!!:|||.!!||| ||||||:!!|||:!:!.!..!:!! SerIleIleIleCysPheAlaGlyTyrGluValLeuLeuValSerIle 33097 : AGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGGTGAGTATC : 33146 vulgar: AfOr74/86like_1 198 254 . KQ414828.1 32978 33146 + 159 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32979 33146 159 + . gene_id 6 ; sequence AfOr74/86like_1 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 32979 33146 . + . KQ414828.1 exonerate:protein2genome:local exon 32979 33146 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32979 33146 159 + . alignment_id 6 ; Query AfOr74/86like_1 ; Align 32979 199 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr74/86like_1 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 111 -> 185 Target range: 37456 -> 37985 112 : ValAsnTyrGlyLysAsnLysSerGluArgThrLeuProValArgMetTrpIleAspIle : 131 ...||| !|||||||||:!!|||!!:||| !! ! ! ! !||||||:!!|||:!! AlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeu 37457 : gcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTA : 37514 132 : ProLeuSerThrThrProTyrTyrGluLeuLeuPheAlaSerGln >>>> Target I : 147 |||||||||! !|||||||||||||||::: ::! !! !||| 307 ProLeuSerIleThrProTyrTyrGluIleThrTyrIleIleGln++ 37515 : CCATTATCCATAACAccatattatgaaattacttACATAATACAGgt............. : 37564 148 : ntron 1 >>>> LeuIleAlaLeuGlnGlnIleGlyLeuThrTyrLeuSerAsnAspA : 162 bp !:!!:!!:!! ! |||:!!.!! ! !||||||!!! ||| ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspI 37565 : ............agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgata : 37914 163 : snTyrLeuCysValLeuSerMetHisLeuAsnTyrGlnPheArgIleLeuGlnHisArgM : 182 ... :::||| :!:|||:!! ! !||||||||||||||||||:!!|||! leIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgI 37915 : tcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAA : 37974 183 : etLeuThrIle : 185 !: !!.!:!: leAlaAsnVal 37975 : TTGCCAATGTG : 37985 vulgar: AfOr74/86like_1 111 185 . KQ414828.1 37456 37985 + 158 M 35 105 5 0 2 I 0 303 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37457 37985 158 + . gene_id 7 ; sequence AfOr74/86like_1 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37457 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37457 37561 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 37985 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 37985 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37457 37985 158 + . alignment_id 7 ; Query AfOr74/86like_1 ; Align 37457 112 105 ; Align 37869 147 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr74/86like_1 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 198 -> 254 Target range: 38042 -> 38210 199 : ThrGluLysCysTyrLysAlaLeuLysLysCysIleLysGlnHisGlnSerLeuLeuLys : 218 :!!||||||||||||! !!!!|||!!.||||||:!!|||||||||:!!|||:!!:!! SerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGlu 38043 : TCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAA : 38100 219 : TyrCysLysLysLeuAspTyrValTyrThrLeuThrIleLeuAsnHisValIleValPhe : 238 !:!||| !! !|||!!: ! |||!:!|||:!!! ! !|||...!!.|||:!!:!!||| PheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnValLeuMetPhe 38101 : TTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCTAATGTTT : 38160 239 : SerLeuIleMetCysIleAlaPheTyrGluIleLeuIleAlaAspVal : 254 |||:!!:!!!!:|||.!!!.! ! |||:!! !|||:!:!.!..!:!! SerIleLeuIleCysPheValValTyrGlnAlaLeuLeuValSerIle 38161 : AGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGGTGAGTATC : 38210 vulgar: AfOr74/86like_1 198 254 . KQ414828.1 38042 38210 + 144 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38043 38210 144 + . gene_id 8 ; sequence AfOr74/86like_1 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38043 38210 . + . KQ414828.1 exonerate:protein2genome:local exon 38043 38210 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38043 38210 144 + . alignment_id 8 ; Query AfOr74/86like_1 ; Align 38043 199 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr74/86like_1 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 198 -> 254 Target range: 22899 -> 23067 199 : ThrGluLysCysTyrLysAlaLeuLysLysCysIleLysGlnHisGlnSerLeuLeuLys : 218 :!!||||||||||||! !!!!|||!!.||||||:!!|||||||||:!!|||:!!:!! SerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGlu 22900 : TCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAA : 22957 219 : TyrCysLysLysLeuAspTyrValTyrThrLeuThrIleLeuAsnHisValIleValPhe : 238 !:!||| !! !|||!!: ! |||!:!|||:!!! !:!!|||...!!.|||:!!:!!! ! PheCysAlaThrLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMetSer 22958 : TTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCTAATGTCT : 23017 239 : SerLeuIleMetCysIleAlaPheTyrGluIleLeuIleAlaAspVal : 254 |||:!!:!!!!:|||.!! ! |||:!!:!!|||:!:!.!..!:!! SerIleLeuIleCysPheIleGlyTyrGlnValLeuLeuValSerIle 23018 : AGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGGTGAGTATC : 23067 vulgar: AfOr74/86like_1 198 254 . KQ414828.1 22899 23067 + 141 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22900 23067 141 + . gene_id 9 ; sequence AfOr74/86like_1 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 22900 23067 . + . KQ414828.1 exonerate:protein2genome:local exon 22900 23067 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22900 23067 141 + . alignment_id 9 ; Query AfOr74/86like_1 ; Align 22900 199 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr74/86like_1 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 111 -> 150 Target range: 32392 -> 32509 112 : ValAsnTyrGlyLysAsnLysSerGluArgThrLeuProValArgMetTrpIleAspIle : 131 ...||| !|||||||||:!!|||!!:||| !! ! ! ! !||||||:!!|||:!! AlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeu 32393 : gcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTA : 32450 132 : ProLeuSerThrThrProTyrTyrGluLeuLeuPheAlaSerGlnLeuIleAlaLeu : 150 |||||||||..!|||||||||||||||::: ::! !! !|||:!!:!! !!:!! ProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuProIle 32451 : CCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCAATT : 32509 vulgar: AfOr74/86like_1 111 150 . KQ414828.1 32392 32509 + 106 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32393 32509 106 + . gene_id 10 ; sequence AfOr74/86like_1 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 32393 32509 . + . KQ414828.1 exonerate:protein2genome:local exon 32393 32509 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32393 32509 106 + . alignment_id 10 ; Query AfOr74/86like_1 ; Align 32393 112 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr74/86like_1 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 111 -> 150 Target range: 27345 -> 27462 112 : ValAsnTyrGlyLysAsnLysSerGluArgThrLeuProValArgMetTrpIleAspIle : 131 ...||| !|||||||||:!!|||!!:||| !! ! ! !! !||||||.!!|||:!! AlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPheAspLeu 27346 : gcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTCGATCTA : 27403 132 : ProLeuSerThrThrProTyrTyrGluLeuLeuPheAlaSerGlnLeuIleAlaLeu : 150 |||||||||..!|||||||||||||||::: ::! !! !|||:!!:!! !!:!! ProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuProIle 27404 : CCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCAATT : 27462 vulgar: AfOr74/86like_1 111 150 . KQ414828.1 27345 27462 + 104 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27346 27462 104 + . gene_id 11 ; sequence AfOr74/86like_1 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27346 27462 . + . KQ414828.1 exonerate:protein2genome:local exon 27346 27462 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27346 27462 104 + . alignment_id 11 ; Query AfOr74/86like_1 ; Align 27346 112 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr94 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1362 Query range: 0 -> 399 Target range: 21030 -> 24181 1 : MetSerLeuLysHisArgArgAspValSerPheSerLeuAlaThrPhePheLeuArgVal : 20 ||||||||||||:!!|||!:!||||||||| !!!!!||||||!.!|||!:!||| !||| MetSerLeuLysTyrArgGlnAspValSerValArgLeuAlaAsnPheTyrLeuTyrVal 21031 : ATGAGCTTGAAATATCGCCAAGACGTTTCCGTTAGATTAGCCAATTTTTATCTGTATGTC : 21088 21 : ValGlyPheTrpLeuThrSerSerProLeuGluGluTrpLeuGlyAsnValThrValMet : 40 ||||||||||||!!!.!!:!!!:!! !:!!|||||||||!!!||||||!.!.!!:!!:!! ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheGlyAsnAlaAlaIleLeu 21089 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCGGAAACGCGGCGATTCTG : 21148 41 : TyrSerIleIleThrIleValPheSerMetTrpValGlnThrArgGlyLeuTyrPheSer : 60 |||!!!|||:!!|||:!! !!||| !||||||:!!||| !|||||||||||||||||| TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSer 21149 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGACTTTATTTCTCC : 21208 61 : TrpGlyAspPheGly >>>> Target Intron 1 >>>> ValCysThrPheIleA : 71 ||||||:!!|||! ! 666 bp ||||||! !!:!!!:| TrpGlyAsnPheGlu++ ++ValCysMetTyrMetA 21209 : TGGGGAAACTTTGAAgt.........................aggTTTGCATGTACATGG : 21907 72 : laCysAsnSerLeuGlyLeuIleMetAspLeuLeuLysValPheValValPheIleHisL : 91 ||||||||||||||!.!|||:!!:!!|||:!!:!!|||:!!||||||:!!.!!:!!!..| laCysAsnSerLeuAlaLeuValLeuAspIleIleLysIlePheValLeuLeuValArgL 21908 : CATGCAACAGTTTAGCCCTGGTTTTGGATATAATCAAGATTTTCGTCCTACTCGTACGGA : 21967 92 : ysLysLysPheLeuGlyLeuIleAlaTyrMetGlnLysAsnPheTrpHisPheAspTyrA : 111 |||||||||||||||||||||||! !||||||||||||||||||||||||!!.:!!|||| ysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheTrpHisLeuAsnTyrA 21968 : AGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTTTGGCATTTGAACTACG : 22027 112 : spGlnTyrGluAsnSerLeuIleAlaAspAlaLysGlnMetCysValTyrPheValCysV : 131 ||||| !!|||||||||:!!|||||| !!||||||!:!! !|||:!!||||||||||||| spGlnAspGluAsnSerIleIleAlaHisAlaLysArgThrCysIleTyrPheValCysV 22028 : ACCAGGACGAGAATTCTATTATCGCACACGCGAAACGAACGTGCATCTACTTCGTCTGCG : 22087 132 : alPheSerPhePheSerGlnSerThrValPheSerTyrMetPheMetProMetIle{S} : 150 |||||||||||! !||||||||||||||||||||||||!!:.!.! !|||.!.:!!{|} alPheSerPheCysSerGlnSerThrValPheSerTyrIleIleArgProPheVal{S}+ 22088 : TCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTATATAATAAGGCCATTTGTA{T}g : 22145 151 : >>>> Target Intron 2 >>>> {er}AsnIleGlyLysAsnGluSerAspArgM : 160 170 bp {||}|||:!!||||||||||||||||||||| + ++{er}AsnLeuGlyLysAsnGluSerAspArgG 22146 : t.........................ag{ca}AATCTTGGAAAGAATGAATCTGATAGAG : 22344 161 : etLeuIlePheAsnMetTrpLeuAspLeuProLeuSerMetSerProTyrPheGluIleT : 180 ! !|||!:!:!!||||||||||||||||||||||||:!:!!!||||||:::||||||| luHisIleTyrAspMetTrpLeuAspLeuProLeuSerValThrProTyrTyrGluIleT 22345 : AACATATATACGATATGTGGCTCGATCTACCATTATCCGTAACAccatattatgaaatta : 22404 181 : hrTyrValIleGln >>>> Target Intron 3 >>>> AlaLeuCysLeuTyrGl : 190 |||||:!!|||||| 307 bp ||||||! !:!!||||| hrTyrIleIleGln++ ++AlaLeuSerValTyrGl 22405 : cttACATAATACAGgt.........................agGCTTTATCTGTGTACCA : 22741 191 : nValGlyIleCysTyrLeuCysValAspAsnMetPheCysIleMetCysLeuHisLeuAl : 210 ||||.!! |||||||||||| ||| :::||| |||:::|||||||||:!!|| nValSerAlaCysTyrLeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAl 22742 : AGTTAGCGCGTGTTACCTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGC : 22801 211 : aSerGlnPheArgIleLeuGlnTyrArgLeuValAsnLeuSerSerValGluAsnLysGl : 230 |.!!||||||||||||||||||||||||:!!!.!|||:!!|||.!!:!!....!.! !! aGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleVa 22802 : TGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGT : 22861 231 : uGluValAspAsnGluGluAsnMetAspSer<-><->SerGlyArgCysTyrAlaIleLe : 248 !:!! !..!.!..!. !!:!! |||..! |||! !!:!|||||| !! !! lLysSerSerGluAsnProSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPh 22862 : GAAAAGCAGTGAAAATCCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTT : 22921 249 : uLysAsnCysIleArgGlnHisGlnAlaLeuIleGlnPheSerIleThrLeuGluGluIl : 268 !||||||||||||!:!||||||||||||||||||:!!|||!!! !||||||||||||:! eLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluVa 22922 : TAAGAATTGCATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGT : 22981 269 : ePheThrIleIleThrLeuGlyGlnValLeuIlePheSerThrLeuIleCysPheValGl : 288 !||||||:!!|||..!|||||||||||||||!!:! !|||! !||||||||||||:!!|| lPheThrValIleValLeuGlyGlnValLeuMetSerSerIleLeuIleCysPheIleGl 22982 : ATTCACGGTAATCGTACTCGGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGG : 23041 289 : yTyrGlnValLeuLeu >>>> Target Intron 4 >>>> ValAsnLeuThrPhe : 298 |||||||||||||||| 492 bp :!!!!.|||:!!||| yTyrGlnValLeuLeu++ ++IleLysLeuSerPhe 23042 : GTATCAAGTACTCCTGgt.........................agATAAAGTTATCATTT : 23563 299 : SerTrpArgIleSerPheLeuCysPheLeuIleThrAsnMetCysGlnLeuTrpMetPhe : 318 ..!! !|||:!!:!!||| !|||||||||!!:! !..!||| !!||||||||||||||| GluSerArgValAlaPheAlaCysPheLeuMetMetGlyMetSerGlnLeuTrpMetPhe 23564 : GAATCGCGCGTTGCTTTCGCGTGCTTCTTGATGATGGGCATGAGTCAACTATGGATGTTC : 23623 319 : ThrTyrSerCysAspCysMetThrArgGluSerValAsnValAlaSerAlaValTyrSer : 338 ||||||||||||||||||!!:|||! !||||||:!!|||:!!|||..!:!!||||||:!! ThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAla 23624 : ACGTATAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCT : 23683 339 : IleProTrpThrArgIleProMetAspLysPheGlyLysMetIleArgLysAspLeuGln : 358 !||||||! !!.!:!!|||||||||||||||||||||:!!:!!||||||!!:|||||| GlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysGluLeuGln 23684 : GGACCATGGATAAATTTACCAATGGACAAATTTGGAAAACTGCTAAGAAAAGAATTGCAA : 23743 359 : PheValValValArgSerArgArgAlaCysSerLeuThrGlyCysGlyPhePheAlaIle : 378 .!.:!!:!!:!!|||:!!|||||| !!! !:!!||||||!.!||||||||||||:!!||| MetLeuIleLeuArgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIle 23744 : ATGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATA : 23803 379 : SerLeuGluThrTyrThrLys >>>> Target Intron 5 >>>> IleMetSerT : 389 ||||||||||||!:!|||||| 313 bp |||||||||| SerLeuGluThrPheThrLys++ ++IleMetSerT 23804 : TCTCTCGAAACCTTTACTAAGgt.........................agATCATGAGTA : 24149 390 : hrAlaMetSerTyrPheThrIleLeuLysGln : 399 ||:!!|||||||||||||||:!!||||||||| hrSerMetSerTyrPheThrLeuLeuLysGln 24150 : CATCAATGTCGTATTTCACATTATTAAAACAA : 24181 vulgar: AfOr94 0 399 . KQ414828.1 21030 24181 + 1362 M 65 195 5 0 2 I 0 662 3 0 2 M 84 252 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 34 102 5 0 2 I 0 303 3 0 2 M 56 168 G 0 6 M 53 159 5 0 2 I 0 488 3 0 2 M 92 276 5 0 2 I 0 309 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21031 24181 1362 + . gene_id 1 ; sequence AfOr94 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 21031 21225 . + . KQ414828.1 exonerate:protein2genome:local exon 21031 21225 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 21226 21227 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 21226 21891 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 21890 21891 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 21892 22144 . + . KQ414828.1 exonerate:protein2genome:local exon 21892 22144 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22145 22146 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22145 22314 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 22313 22314 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 22315 22418 . + . KQ414828.1 exonerate:protein2genome:local exon 22315 22418 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22419 22420 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22419 22725 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 23058 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23059 23060 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23059 23550 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 23549 23550 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 23551 23826 . + . KQ414828.1 exonerate:protein2genome:local exon 23551 23826 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23827 23828 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23827 24139 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 24138 24139 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 24140 24181 . + . KQ414828.1 exonerate:protein2genome:local exon 24140 24181 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21031 24181 1362 + . alignment_id 1 ; Query AfOr94 ; Align 21031 1 195 ; Align 21892 66 252 ; Align 22317 151 102 ; Align 22726 185 168 ; Align 22900 241 159 ; Align 23551 294 276 ; Align 24140 386 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr94 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 988 Query range: 3 -> 400 Target range: 715 -> 6462 4 : LysHisArgArgAspValSerPheSerLeuAlaThrPhePheLeuArgValValGlyPheTr : 24 ..!:!!!.!||||||:!!:!! ! !!!:!!.!!.!!|||!:!|||!:!:!!:!!|||||||| SerAsnAsnArgAspIleAlaValThrValThrAlaPheTyrLeuLysIleIleGlyPheTr 716 : TCGAATAACAGGGACATAGCGGTGACCGTTACGGCTTTCTACTTGAAAATTATCGGCTTCTG : 776 25 : pLeuThrSerSerProLeuGluGluTrpLeuGlyAsnValThrValMetTyrSerIleIleT : 45 ||||.!!..!!!! ! !|||:!: ... ... !! !:!!!!|||.!!! pLeuAlaAspThrTyrGluGluLysArgArgArgLysPheAlaGlnAsnPheThrIlePheM 777 : GTTAGCTGACACTTACGAGGAGAAacgtcgaagaaaattcgcgcAGAATTTCACGATATTTA : 839 46 : hrIleValPheSerMetTrpValGlnThrArgGlyLeuTyrPheSerTrpGlyAspPheGly : 65 !:!:|||! !:!!:!! :!!:!!||||||! !:!!|||!:!!!!||||||||||||.!! etLeuValCysAlaValValIleGluThrArgAspIleTyrTyrThrTrpGlyAspPheSer 840 : TGCTGGTGTGCGCTGTGGTAATTGAGACGAGGGATATCTATTACACCTGGGGTGATTTCAGC : 899 66 : >>>> Target Intron 1 >>>> ValCysThrPheIleAlaCysAsnSerLeuGly : 76 1408 bp :!! !..!!:!||| !||||||! !||| ! ++ ++IleValValTyrIleMetCysAsnIleLeuThr 900 : gt.........................agATCGTTGTATACATAATGTGCAACATTCTAACA : 2340 77 : LeuIleMetAspLeuLeuLysValPheValValPheIleHisLysLysLysPheLeuGlyLe : 97 ||| !!!:..!|||!!!|||:!!|||:!! !.!. !|||||||||...||| || LeuGlyIleSerLeuPheLysIlePheLeuSerMetTrpSerLysLysLysLeuLeuGluLe 2341 : CTGGGCATAAGTTTGTTCAAGATCTTTCTCTCGATGTGGAGTAAGAAAAAACttttggaatt : 2403 98 : uIleAlaTyrMetGlnLysAsnPheTrpHisPheAspTyrAspGlnTyrGluAsnSerLeuI : 118 |||| ::: ::!! !||||||||||||! |||||||||..! ! |||.!.! !:!!: uIleLysPheAlaArgThrAsnPheTrpHisSerAspTyrAspSerGlnGluGlnIleIleV 2404 : aattaaattcgccAGAACGAATTTCTGGCATTCGGATTATGACTCGCAGGAGCAAATTATTG : 2466 119 : leAlaAspAlaLysGlnMetCysValTyrPheValCysValPheSerPhePheSerGlnSer : 138 !: !!!:..!|||!::! |||..!!:!.!!:!!|||||||||!:!||||||:!!.!..!! alAsnGluCysLysArgThrCysThrPheLeuIleCysValPheAsnPhePheAlaAsnGly 2467 : TGAACGAGTGTAAACGCACTTGTACATTCCTTATATGCGTGTTTAATTTCTTCGCTAATGGG : 2526 139 : ThrValPheSerTyrMetPheMetProMetIle{S} >>>> Target Intron 2 >>> : 150 ||||||! !.!!|||!!:.!!! !|||!!::!!{:} 318 bp ThrValSerGlyTyrIleIleArgProIleVal{A}++ 2527 : ACAGTGTCTGGATACATAATCAGGCCAATTGTA{G}gt........................ : 2565 151 : > {er}AsnIleGlyLysAsnGluSerAspArgMetLeuIlePheAsnMetTrpLeuAspL : 169 {!!}!::||||||||||||||||||||||||:!:|||||| !!|||.!.|||:!!|||| ++{la}SerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspL 2566 : .ag{CA}AgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACC : 2937 170 : euProLeuSerMetSerProTyrPheGluIleThrTyrValIleGln >>>> Target I : 185 |||||:!!!!!!!:!!!||||||:::|||||| :::...|||||| 406 euProIleThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2938 : TGCCGATAACCATCACACCATactatgaaatattatttacgaTACAGgt............. : 2987 186 : ntron 3 >>>> AlaLeuCysLeuTyrGlnValGlyIleCysTyrLeuCysValAspAsn : 200 bp !!!! !:!! ! ||| !!||| !!|||||||||:!!|||||| ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsn 2988 : ............agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAAT : 3436 201 : MetPheCysIleMetCysLeuHisLeuAlaSerGlnPheArgIleLeuGlnTyrArgLeuVa : 221 .!..!.|||!!:!!: !|||||| !|||!!!||||||||||||||||||||||||||| PheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSe 3437 : TTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTC : 3499 222 : lAsnLeuSerSerValGluAsnLysGluGluValAspAsnGluGluAsnMetAspSerSerG : 242 !|||:!!!!!.!!!.!.!..!.:::...::: :::::::::... !..!!:!|||! rAsnValCysGlyAlaAsnGluArgSerAspLysIleSerLysLysThrProSerAsnSerA 3500 : GAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTCGG : 3562 243 : lyArgCysTyrAlaIleLeuLysAsnCysIleArgGlnHisGlnAlaLeuIleGlnPheSer : 262 !..!|||||||||! !!!||||||||||||!:!||||||||||||||||||:!!!:!!!! spGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCys 3563 : ACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGT : 3622 263 : IleThrLeuGluGluIlePheThrIleIleThrLeuGlyGlnValLeuIlePheSerThrLe : 283 ! !! !|||:!!|||:!:||| !|||.!!..!|||!.!|||||||||:!!|||||| !|| AsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeuLe 3623 : AACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTT : 3685 284 : uIleCysPheValGlyTyrGlnValLeuLeu >>>> Target Intron 4 >>>> Va : 294 |!!:|||.!!! !|||||| :!!:!!:!! 457 bp ! uMetCysLeuAspGlyTyr---LeuValMet++ ++Gl 3686 : AATGTGCCTCGATGGATAT---TTGGTGATGgt.........................agGA : 4172 295 : lAsnLeuThrPheSerTrpArgIleSerPheLeuCysPheLeuIleThrAsnMetCysGlnL : 315 !:!! ! !!.!!! ! !|||:!!!!!||||||! ! !|||! ! !:!!||||||| uAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnL 4173 : AGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAAC : 4235 316 : euTrpMetPheThrTyrSerCysAspCysMetThrArgGluSerValAsnValAlaSerAla : 335 ||! !||||||||||||||||||||||||:!!! !|||||||||:!!|||||||||!:!||| euLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAla 4236 : TGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCT : 4295 336 : ValTyrSerIleProTrpThrArgIleProMetAspLysPheGlyLysMetIleArgLysAs : 356 :!!|||..! ! !!|||! !!.!:!:|||||||||!:!! !|||::!|||:!:|||||||| IleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAs 4296 : ATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGA : 4358 357 : pLeuGlnPheValValValArgSerArgArgAlaCysSerLeuThrGlyCysGlyPhePheA : 377 |||| !||||||:!!! !||||||||| ! !!|||!!!||||||!.!|||||||||||| pLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePheP 4359 : TTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCC : 4421 378 : laIleSerLeuGluThrTyrThrLys >>>> Target Intron 5 >>>> IleMetS : 388 !!:!:||||||||||||||||||..! 1970 bp :!!!!:| roValSerLeuGluThrTyrThrSer++ ++ValIleS 4422 : CTGTGTCACTGGAAACGTACACTTCGgt.........................agGTTATAA : 6424 389 : erThrAlaMetSerTyrPheThrIleLeuLysGlnArg : 400 ||||||||:!!||||||||||||:!:|||!:!|||||| erThrAlaValSerTyrPheThrLeuLeuArgGlnArg 6425 : GTACAGCAGTGTCGTACTTCACACTGTTAAGGCAACGT : 6462 vulgar: AfOr94 3 400 . KQ414828.1 715 6462 + 988 M 62 186 5 0 2 I 0 1404 3 0 2 M 84 252 S 0 1 5 0 2 I 0 314 3 0 2 S 1 2 M 34 102 5 0 2 I 0 402 3 0 2 M 105 315 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 716 6462 988 + . gene_id 2 ; sequence AfOr94 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 716 901 . + . KQ414828.1 exonerate:protein2genome:local exon 716 901 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 902 903 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 902 2309 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 2308 2309 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 2310 2562 . + . KQ414828.1 exonerate:protein2genome:local exon 2310 2562 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2563 2564 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 2563 2880 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 2879 2880 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 2881 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2881 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 3 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6462 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6462 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 716 6462 988 + . alignment_id 2 ; Query AfOr94 ; Align 716 4 186 ; Align 2310 66 252 ; Align 2883 151 102 ; Align 3391 185 315 ; Align 3706 291 9 ; Align 4172 294 276 ; Align 6418 386 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr94 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 763 Query range: 149 -> 399 Target range: 37456 -> 39205 150 : SerAsnIleGlyLysAsnGluSerAspArgMetLeuIlePheAsnMetTrpLeuAspLeu : 169 :::|||:!!||||||||||||||||||||| ! !|||!:!:!!||||||||||||||| AlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeu 37457 : gcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTA : 37514 170 : ProLeuSerMetSerProTyrPheGluIleThrTyrValIleGln >>>> Target I : 185 |||||||||!!:!!!||||||:::||||||||||||:!!|||||| 307 ProLeuSerIleThrProTyrTyrGluIleThrTyrIleIleGln++ 37515 : CCATTATCCATAACAccatattatgaaattacttACATAATACAGgt............. : 37564 186 : ntron 1 >>>> AlaLeuCysLeuTyrGlnValGlyIleCysTyrLeuCysValAspA : 200 bp ||||||! !:!!|||||||||.!! |||||||||||| ||| ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspI 37565 : ............agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgata : 37914 201 : snMetPheCysIleMetCysLeuHisLeuAlaSerGlnPheArgIleLeuGlnTyrArgL : 220 :::||| |||:::|||||||||:!!|||.!!||||||||||||||||||||||||: leIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgI 37915 : tcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAA : 37974 221 : euValAsnLeuSerSerValGluAsnLysGluGluValAspAsnGluGluAsnMetAspS : 240 !!!.!|||:!!|||.!!:!!....!.! !! !:!! !..!.!..!. !!:!! |||. leAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSerThrAspG 37975 : TTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATG : 38034 241 : er<-><->SerGlyArgCysTyrAlaIleLeuLysAsnCysIleArgGlnHisGlnAlaL : 258 .! |||! !!:!|||||| !! !!!||||||||||||!:!||||||||||||| luLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaL 38035 : AATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCAC : 38094 259 : euIleGlnPheSerIleThrLeuGluGluIlePheThrIleIleThrLeuGlyGlnValL : 278 |||||:!!|||!!! !||||||||||||:!!||||||:!!|||.!!||||||||||||| euIleGluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnValL 38095 : TAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCC : 38154 279 : euIlePheSerThrLeuIleCysPheValGlyTyrGlnValLeuLeuValAsnLeu >> : 297 ||!!:||||||! !|||||||||||||||! !||||||!.!|||||||||!:!:!! euMetPheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeuValSerIle++ 38155 : TAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGGTGAGTATCgt.. : 38213 298 : >> Target Intron 2 >>>> ThrPheSerTrpArgIleSerPheLeuCysPheLe : 308 280 bp ...||| ::: !:!! :!!! ! ++AsnPheTyrTyrLeuTrpAsn***MetPheAlaTh 38214 : .......................agaatttttattacctgTGGAATTAAATGTTCGCAAC : 38524 309 : uIleThrAsnMetCysGlnLeuTrpMetPheThrTyrSerCysAspCysMetThrArgGl : 328 !!!:|||..!:!! !!|||||||||||||||||||||||||||||||||!!:|||! !|| rMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGl 38525 : GATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGA : 38584 329 : uSerValAsnValAlaSerAlaValTyrSerIleProTrpThrArgIleProMetAspLy : 348 ||||:!!|||:!!|||..!:!!||||||:!! !||||||! !!.!:!!||||||||||| uSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLy 38585 : AAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataa : 38644 349 : sPheGlyLysMetIleArgLysAspLeuGlnPheValValValArgSerArgArgAlaCy : 368 ||||||||||::::!!||||||||||||||| ! :!!:!!:!!|||:!!|||||| !!! sPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSe 38645 : atttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTC : 38704 369 : sSerLeuThrGlyCysGlyPhePheAlaIleSerLeuGluThrTyrThrLys >>>> T : 386 !|||||||||!.!||||||||||||:!!|||||||||||||||!:!|||||| rSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 38705 : CTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt...... : 38760 387 : arget Intron 3 >>>> IleMetSerThrAlaMetSerTyrPheThrIleLeuLys : 398 406 bp ||||||||||||:!!|||||||||||||||:!!|||||| ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLys 38761 : ...................agATCATGAGTACATCAATGTCGTATTTCACATTATTAAAA : 39200 399 : Gln : 399 ||| Gln 39201 : CAA : 39205 vulgar: AfOr94 149 399 . KQ414828.1 37456 39205 + 763 M 35 105 5 0 2 I 0 303 3 0 2 M 56 168 G 0 6 M 56 168 5 0 2 I 0 276 3 0 2 M 89 267 5 0 2 I 0 402 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37457 39205 763 + . gene_id 3 ; sequence AfOr94 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37457 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37457 37561 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 38210 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 38210 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 38211 38212 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 38211 38490 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 38489 38490 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 38491 38757 . + . KQ414828.1 exonerate:protein2genome:local exon 38491 38757 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 38758 38759 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 38758 39163 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 39162 39163 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 39164 39205 . + . KQ414828.1 exonerate:protein2genome:local exon 39164 39205 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37457 39205 763 + . alignment_id 3 ; Query AfOr94 ; Align 37457 150 105 ; Align 37869 185 168 ; Align 38043 241 168 ; Align 38491 297 267 ; Align 39164 386 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr94 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 697 Query range: 181 -> 407 Target range: 32795 -> 34325 182 : ValIleGlnAlaLeuCysLeuTyrGlnValGlyIleCysTyrLeuCysValAspAsnMet : 201 ::!! |||||||||! !:!!||||||||||||:!:|||||||||||| ||||||::: LeuThrGlnAlaLeuSerValTyrGlnValGlyValCysTyrLeuCysPheAspAsnIle 32796 : ctCACGCAGGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCTttgataacatt : 32853 202 : PheCysIleMetCysLeuHisLeuAlaSerGlnPheArgIleLeuGlnTyrArgLeuVal : 221 ||| |||||||||||||||:!!|||.!!||||||||||||||||||||||||:!!!.! PhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAla 32854 : tttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCC : 32913 222 : AsnLeuSerSerVal<->GluAsnLysGluGluValAspAsnGluGluAsnMetAsp<-> : 240 |||:!!|||.!!:!! |||! !:!!... !|||||| !...!.. !!: AsnValSerGlyLeuSerGluIleValLysSerAsnAspAsnThrSerThrAlaGluLeu 32914 : AATGTGTCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACAAGCACGGCTGAATTA : 32973 241 : SerSerGlyArgCysTyrAlaIleLeuLysAsnCysIleArgGlnHisGlnAlaLeuIle : 259 ! !|||! !!:!|||||| !! !!!||||||||||||!:!|||||||||||||||||| TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 32974 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTaatt : 33033 260 : GlnPheSerIleThrLeuGluGluIlePheThrIleIleThrLeuGlyGlnValLeuIle : 279 :::||| |||||||||:!!||||||:!!|||..!|||||||||||||||!!: GluPheCysGluIleLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMet 33034 : gaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTAATG : 33093 280 : PheSerThrLeuIleCysPheValGlyTyrGlnValLeuLeu >>>> Target Intr : 294 ||||||! !:!!|||||||||!.!||||||:!!||||||||| 406 bp PheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeu++ 33094 : TTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGgt................ : 33140 295 : on 1 >>>> ValAsnLeuThrPheSerTrpArgIleSerPheLeuCysPheLeuIleT : 310 :!!!..||| !!|||..!! !|||:!!:!!||| !||||||||||||| ++IleThrLeuProPheGluSerArgValAlaPheThrCysPheLeuIleT 33141 : .........agATAACGTTACCATTTGAATCGCGCGTTGCTTTCACGTGCTTCTTGATTA : 33592 311 : hrAsnMetCysGlnLeuTrpMetPheThrTyrSerCysAspCysMetThrArgGluSerV : 330 ||..!:!! !!|||||||||||||||||||||||||||:!!|||!!:|||! !||||||: hrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAsnCysIleThrThrGluSerL 33593 : CGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCAATTGCATAACAACAGAAAGCC : 33652 331 : alAsnValAlaSerAlaValTyrSerIleProTrpThrArgIleProMetAspLysPheG : 350 !!|||:!!|||..!:!!||||||:!! !||||||! !!.!:!!|||||||||||||||| euAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheG 33653 : TGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATggataaatttg : 33712 351 : lyLysMetIleArgLysAspLeuGlnPheValValValArgSerArgArgAlaCysSerL : 370 |||||::::!!||||||||||||||| ! :!!:!!:!!|||:!!|||||| !!! !:!!| lyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerAlaL 33713 : gaaaactgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCGCTT : 33772 371 : euThrGlyCysGlyPhePheAlaIleSerLeuGluThrTyrThrLys >>>> Target : 386 |||||!.!||||||||||||:!!|||!!!|||||||||!:!|||||| 4 euThrAlaCysGlyPhePheSerIleThrLeuGluThrPheThrLys++ 33773 : TGACTGCCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTACTAAGgt........... : 33822 387 : Intron 2 >>>> IleMetSerThrAlaMetSerTyrPheThrIleLeuLysGlnAr : 400 40 bp ||||||||||||:!!|||||||||||||||:!!|||||||||!! ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnSe 33823 : ..............agATCATGAGTACATCAATGTCGTATTTCACCCTACTAAAACAAAG : 34302 401 : gThrIleGluIleGluAsnThr : 407 !.!! !!:! !! !|||:!! rAlaGluAspThrValAsnSer 34303 : TGCCGAGGACACAGTAAATTCG : 34325 vulgar: AfOr94 181 407 . KQ414828.1 32795 34325 + 697 M 45 135 G 0 3 M 13 39 G 0 3 M 54 162 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32796 34325 697 + . gene_id 4 ; sequence AfOr94 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32796 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32796 33137 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 2 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34325 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34325 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32796 34325 697 + . alignment_id 4 ; Query AfOr94 ; Align 32796 182 135 ; Align 32934 227 39 ; Align 32976 240 162 ; Align 33544 294 276 ; Align 34260 386 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr94 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 683 Query range: 0 -> 189 Target range: 31105 -> 32512 1 : MetSerLeuLysHisArgArgAspValSerPheSerLeuAlaThrPhePheLeuArgVal : 20 ||||||||||||:!!|||!:!||||||||||||!!!||||||!.!||||||||| !||| MetSerLeuLysTyrArgGlnAspValSerPheArgLeuAlaAsnPhePheLeuTyrVal 31106 : ATGAGCTTGAAATATCGTCAAGACGTTTCCTTTAGATTAGCCAACTTTTTTCTGTATGTT : 31163 21 : ValGlyPheTrpLeuThrSerSerProLeuGluGluTrpLeuGlyAsnValThrValMet : 40 ||||||||||||!!!.!!:!!!:!! !:!!|||||||||!!! !!|||!.!.!!:!!:!! ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeu 31164 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCTGCGATTCTG : 31223 41 : TyrSerIleIleThrIleValPheSerMetTrpValGlnThrArgGlyLeuTyrPheSer : 60 |||!!!|||:!!|||:!! !!||| !||||||:!!||| !|||||||||||||||||| TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSer 31224 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGGCTTTATTTCTCC : 31283 61 : TrpGlyAspPheGly >>>> Target Intron 1 >>>> ValCysThrPheIleA : 71 ||||||:!!|||! ! 670 bp ||||||! !!:!!!:| TrpGlyAsnPheGlu++ ++ValCysMetTyrMetA 31284 : TGGGGAAACTTTGAAgt.........................agGTTTGCATGTACATGG : 31986 72 : laCysAsnSerLeuGlyLeuIleMetAspLeuLeuLysValPheValValPheIleHisL : 91 |||||||||||:!!!.!|||:!!:!!|||:!!:!!|||:!!||||||:!! !!:!!!..| laCysAsnSerIleAlaLeuValLeuAspIleIleLysIlePheValLeuValValArgL 31987 : CATGCAACAGTATAGCCCTGGTTTTGGATATAATCAAGATTTTCGTCCTAGTCGTACGGA : 32046 92 : ysLysLysPheLeuGlyLeuIleAlaTyrMetGlnLysAsnPheTrpHisPheAspTyrA : 111 |||||||||||||||||||||||! !||||||||||||||||||:::|||...::!|||| ysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPhePheHisLeuAsnTyrA 32047 : AGAAAAAGTTTCTCGGTCTGATTGAGTACATgcagaagaatttctttcatttgaaCTACG : 32106 112 : spGlnTyrGluAsnSerLeuIleAlaAspAlaLysGlnMetCysValTyrPheValCysV : 131 ||||| !!|||||||||:!!|||||| !!||||||!:!! !|||:!!||||||||||||| spGlnAspGluAsnSerIleIleAlaHisAlaLysArgThrCysIleTyrPheValCysV 32107 : ATCAGGACGAGAATTCTATTATCGCACACGCGAAACGAACGTGCATCTACTTCGTCTGCG : 32166 132 : alPheSerPhePheSerGlnSerThrValPheSerTyrMetPheMetProMetIle{S} : 150 |||||||||||! !||||||||||||||||||||||||!!:.!.! !|||.!.:!!{|} alPheSerPheCysSerGlnSerThrValPheSerTyrIleIleArgProPheVal{S}+ 32167 : TCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTATATAATAAGGCCATTTGTA{T}g : 32224 151 : >>>> Target Intron 2 >>>> {er}AsnIleGlyLysAsnGluSerAspArgM : 160 170 bp {||}|||:!!||||||||||||||||||||| + ++{er}AsnLeuGlyLysAsnGluSerAspArgG 32225 : t.........................ag{ca}AATCTTGGAAAGAATGAATCTGATAGAG : 32423 161 : etLeuIlePheAsnMetTrpLeuAspLeuProLeuSerMetSerProTyrPheGluIleT : 180 ! !|||!:!:!!||||||||||||||||||||||||:!:!!!||||||:::||||||| luHisIleTyrAspMetTrpLeuAspLeuProLeuSerValThrProTyrTyrGluIleT 32424 : AACATATATACGATATGTGGCTCGATCTACCATTATCCGTAACAccatattatgaaatta : 32483 181 : hrTyrValIleGlnAlaLeuCysLeuTyr : 189 |||||:!!||||||!.!||| :!!!:! hrTyrIleIleGlnValLeuProIlePhe 32484 : cttACATAATACAGGTATTACCAATTTTC : 32512 vulgar: AfOr94 0 189 . KQ414828.1 31105 32512 + 683 M 65 195 5 0 2 I 0 666 3 0 2 M 84 252 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31106 32512 683 + . gene_id 5 ; sequence AfOr94 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 31106 31300 . + . KQ414828.1 exonerate:protein2genome:local exon 31106 31300 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 31301 31302 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 31301 31970 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 31969 31970 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 31971 32223 . + . KQ414828.1 exonerate:protein2genome:local exon 31971 32223 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32224 32225 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32224 32393 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 32392 32393 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 32394 32512 . + . KQ414828.1 exonerate:protein2genome:local exon 32394 32512 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31106 32512 683 + . alignment_id 5 ; Query AfOr94 ; Align 31106 1 195 ; Align 31971 66 252 ; Align 32396 151 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr94 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 655 Query range: 147 -> 401 Target range: 17818 -> 19903 148 : MetIleSerAsnIleGlyLysAsnGluSerAspArgMetLeuIlePheAsnMetTrpLeu : 167 !!::!::::|||||||||||||||||||||!!:|||!!:||| !||||||||||||:!! IleLeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpVal 17819 : ATTTTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTC : 17876 168 : AspLeuProLeuSerMetSerProTyrPheGluIleThrTyrValIleGln >>>> Ta : 185 :!!|||||||||||||||!!!||||||!:!|||||||||::: :::||| AsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln++ 17877 : AACTTGCCATTATCAATGACGCCATATTACgaaataactttttcattaCAGgt....... : 17932 186 : rget Intron 1 >>>> AlaLeuCysLeuTyrGlnValGlyIleCysTyrLeuCysV : 198 110 bp ..!|||! !||||||!!.:!!|||:!: !!|||!!!||| ++ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysP 17933 : ..................aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgct : 18079 199 : alAspAsnMetPheCysIleMetCysLeuHisLeuAlaSerGlnPheArgIleLeuGlnT : 218 ||||||......||||||||| !|||||| !|||!!!|||||||||:!!||||||| heAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnT 18080 : tcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAAT : 18139 219 : yrArgLeuValAsnLeuSerSerValGluAsnLysGluGluValAspAsnGluGluAsnM : 238 |||||:!!!.!|||:!!!!!..!:!!:!!:::||||||... :::...... .!.! yrArgMetAlaAsnMetThrAspLeuLysAspLysGluArgLysGluArgAsnMetLysT 18140 : ACCGAATGGCGAATATGACCGATTTAAAGGacaaagagaggaaagagagaaatatgaAGA : 18199 239 : etAspSerSerGlyArgCysTyrAla<-><-><-><-><->IleLeuLysAsnCysIleA : 253 ..! !|||..! !|||!:!||| :!!||||||:!!! !|||| hrSerValSerSerAlaCysPheAlaThrGluCysTyrAsnValLeuLysAspTyrIleA 18200 : CAAGTGTGAGTTCGGCGTGCTTTGCAACAGAATGTTACAACGTTCTCAAAGATTATATCA : 18259 254 : rgGlnHisGlnAlaLeuIleGlnPheSerIleThrLeuGluGluIlePheThrIleIleT : 273 ||||||||||| !|||||| !:!!!!! !! !||||||:!!:!:|||!.!||||||. rgGlnHisGlnAsnLeuIleAlaTyrCysAsnLysLeuGluLysValPheAsnIleIleV 18260 : GACAGCATCAGAACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGTTCAATATCATTG : 18319 274 : hrLeuGlyGlnValLeuIlePheSerThrLeuIleCysPheValGlyTyrGlnValLeuL : 293 .!|||||||||:!!|||!!:||||||! !|||||||||.!!! !|||!:!|||:!!|||: alLeuGlyGlnLeuLeuMetPheSerMetLeuIleCysLeuAspGlyPheGlnIleLeuM 18320 : TTCTGGGGCAATTGTTAATGTTCAGCATGTTGATCTGTCTCGATGGATTTCAGATACTTA : 18379 294 : eu >>>> Target Intron 2 >>>> ValAsnLeuThrPheSerTrpArgIleSe : 303 !! 975 bp !.!||| ! !! !!!! |||:!:! et++ ++AlaAsnThrProThrArgThrArgLeuIl 18380 : TGgt.........................agGCAAATACACCTACCAGAACCCGACTGAT : 19384 304 : rPheLeuCysPheLeuIleThrAsnMetCysGlnLeuTrpMetPheThrTyrSerCysAs : 323 !|||:!!! ! !:!! !.!! !|||||||||||| !|||||||||||||||||||| ePheIlePheHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSerCysAs 19385 : TTTCATCTTTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGCTGCGA : 19444 324 : pCysMetThrArgGluSerValAsnValAlaSerAlaValTyrSerIleProTrpThrAr : 343 ||||!!:! !|||||||||..!!:!..!|||..!|||||||||||| !|||||||||! pCysIleIleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyProTrpThrLe 19445 : CTGCATCATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGACACT : 19504 344 : gIleProMetAspLysPheGlyLysMetIleArgLysAspLeuGlnPheValValValAr : 363 !:!!||||||..! ! !||||||||||||||||||||||||..!.!!|||:!!:!!|| uLeuProMetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuValIleMetAr 19505 : TTTACCAATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCATGAG : 19564 364 : gSerArgArgAlaCysSerLeuThrGlyCysGlyPhePheAlaIleSerLeuGluThrTy : 383 ||||!!! ! !!|||!!!||||||!.! ! |||||||||!.!:!:|||||||||||||| gSerSerValProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGluThrTy 19565 : ATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAACGTA : 19624 384 : rThrLys >>>> Target Intron 3 >>>> IleMetSerThrAlaMetSerTyr : 393 |||| ! 223 bp :!!:!:||||||||| |||||| rThrGly++ ++ValLeuSerThrAlaAlaSerTyr 19625 : CACAGGGgt.........................agGTTTTAAGCACCGCAGCCTCATAC : 19877 394 : PheThrIleLeuLysGlnArgThr : 401 ||||||:!:||||||||||||:!! PheThrLeuLeuLysGlnArgSer 19878 : TTTACGTTGCTGAAGCAAAGATCA : 19903 vulgar: AfOr94 147 401 . KQ414828.1 17818 19903 + 655 M 37 111 5 0 2 I 0 106 3 0 2 M 62 186 G 0 15 M 47 141 5 0 2 I 0 971 3 0 2 M 92 276 5 0 2 I 0 219 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17819 19903 655 + . gene_id 6 ; sequence AfOr94 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17819 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17819 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18381 . + . insertions 15 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19903 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19903 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17819 19903 655 + . alignment_id 6 ; Query AfOr94 ; Align 17819 148 111 ; Align 18040 185 186 ; Align 18241 247 141 ; Align 19357 294 276 ; Align 19856 386 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr94 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 496 Query range: 187 -> 404 Target range: 10840 -> 13161 188 : LeuTyrGlnValGlyIleCysTyrLeuCysValAspAsnMetPheCysIleMetCysLeu : 207 |||||| ..!||||||||||||!!!||| !!||||||!!:|||||||||||| !!:!! LeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerVal 10841 : CTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTG : 10898 208 : HisLeuAlaSerGlnPheArgIleLeuGlnTyrArgLeuValAsnLeuSerSerValGlu : 227 ||||||::!.!!|||||||||||||||||||||||||||..!!!.||||||..!|||:!! HisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGln 10899 : CATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAA : 10958 228 : AsnLysGluGluValAspAsnGluGluAsnMet<-><->AspSerSerGlyArgCysTyr : 245 !!:!! !... ||| |||::!:!: |||!!!!!! !!|||! !||| TyrGlnIleSerGluLysAsnMetGluSerValLeuGluAspCysThrArgArgSerTyr 10959 : TATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGTAGATCTTAC : 11018 246 : AlaIleLeuLysAsnCysIleArgGlnHisGlnAlaLeuIleGlnPheSerIleThrLeu : 265 ! !! !!!!|||!:!! !:!!||||||||||||.!!||||||.!.!:!! ! ! !||| GluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLysLeu 11019 : GAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAGCTT : 11078 266 : GluGluIlePheThrIleIleThrLeuGlyGlnValLeuIlePheSerThrLeuIleCys : 285 |||.!.:!!!:!|||! !|||! !|||||||||||||||:!:||||||..!||||||||| GluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIleCys 11079 : GAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATTTGC : 11138 286 : PheValGlyTyrGlnValLeuLeuValAsnLeuThrPheSerTrp{Ar} >>>> Targ : 301 .!! !!|||||||||:!!|||||||||!:!:!!:!!.!! !! {! } LeuPheGlyTyrGlnIleLeuLeuValSerIleSerLeuProPro{Th}-- 11139 : CTCTTTGGTTATCAGATATTATTGGTTAGTATTTCACTTCCTCCA{AC}tg......... : 11190 302 : et Intron 1 >>>> {g}IleSerPheLeuCysPheLeuIleThrAsn<->MetCys : 313 1302 bp {!} !|||.!!!!! ||||||||| !..! ||| ! ++{r}ArgSerIlePheMetPheLeuIleCysGlyAlaMetVal 11191 : ................ag{G}CGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTT : 12527 314 : GlnLeuTrpMetPheThrTyrSerCysAspCysMetThrArgGluSerValAsnValAla : 333 !|||!::||||||||||||||||||:!! :!!! !..!:!!|||! !|||:!!||| LeuLeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAla 12528 : TTATTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCT : 12587 334 : SerAlaValTyrSerIleProTrpThrArgIleProMetAspLysPheGlyLysMetIle : 353 ! !|||!.!|||||| !! !|||||| !!!!:||||||:!!||| !||||||! !:!! PheAlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeu 12588 : TTTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTA : 12647 354 : ArgLysAspLeuGlnPheValValValArgSerArgArgAlaCysSerLeuThrGlyCys : 373 ||| ! |||||| !.!.|||:!!! !||||||||||||!.!|||!!!||||||!.! ! ArgHisAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsn 12648 : CGGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAAT : 12707 374 : GlyPhePheAlaIleSerLeuGluThrTyrThrLys >>>> Target Intron 2 > : 386 ||||||||| !!:!:||||||||||||||||||! ! 359 bp GlyPhePheProValSerLeuGluThrTyrThrThr++ 12708 : GGATTTTTCCCTGTGTCCTTAGAAACTTATACTACGgt...................... : 12748 387 : >>> IleMetSerThrAlaMetSerTyrPheThrIleLeuLysGlnArgThrIleGluI : 404 |||:::||||||||| !||||||||||||:!!|||!:!.!.!.!..! !!!:: ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnValGluAspV 12749 : ...agattttgAGTACCGCGGCGTCGTACTTCACATTATTGAGAAATAACGTAGAAGATG : 13159 405 : le : 404 !! al 13160 : TA : 13161 vulgar: AfOr94 187 404 . KQ414828.1 10840 13161 + 496 M 51 153 G 0 6 M 62 186 S 0 2 5 0 2 I 0 1298 3 0 2 S 1 1 M 10 30 G 0 3 M 74 222 5 0 2 I 0 355 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10841 13161 496 + . gene_id 7 ; sequence AfOr94 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 10841 11187 . + . KQ414828.1 exonerate:protein2genome:local exon 10841 11187 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 11188 11189 . + . intron_id 1 ; splice_site "TG" KQ414828.1 exonerate:protein2genome:local intron 11188 12489 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12488 12489 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 12490 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12490 12745 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13104 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13103 13104 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 13105 13161 . + . KQ414828.1 exonerate:protein2genome:local exon 13105 13161 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10841 13161 496 + . alignment_id 7 ; Query AfOr94 ; Align 10841 188 153 ; Align 11000 239 186 ; Align 12491 302 30 ; Align 12524 312 222 ; Align 13105 386 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr94 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 452 Query range: 0 -> 149 Target range: 26060 -> 27176 1 : MetSerLeuLysHisArgArgAspValSerPheSerLeuAlaThrPhePheLeuArgVal : 20 ||||||||||||:!!|||!:!||||||||| !!!!!||||||!.!||||||||| !||| MetSerLeuLysTyrArgGlnAspValSerValArgLeuAlaAsnPhePheLeuTyrVal 26061 : ATGAGCTTGAAATATCGTCAAGACGTTTCCGTTAGATTAGCCAACTTTTTTCTGTATGTC : 26118 21 : ValGlyPheTrpLeuThrSerSerProLeuGluGluTrpLeuGlyAsnValThrValMet : 40 ||||||||||||!!!.!!:!!!:!! !:!!|||||||||!!! !!|||!.!.!!:!!:!! ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeu 26119 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCGGCGATTCTG : 26178 41 : TyrSerIleIleThrIleValPheSerMetTrpValGlnThr >>>> Target Intr : 55 |||!!!|||:!!|||:!! !!||| !||||||:!!||| ! 669 bp TyrThrIleValThrValPhePheValMetTrpLeuGlnLeu+- 26179 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGgg................ : 26225 56 : on 1 >>>> ArgGlyLeuTyrPheSerTrpGlyAspPheGlyValCysThrPheIleA : 71 ... |||||| ::: ... !||||||! !!:!!!:| +-AsnLysLeuTyrVal***PheLeuPheLeuGlnValCysMetTyrMetA 26226 : .........aaaacaaattatacgtctaatttctatttctacaGGTTTGCATGTACATGG : 26940 72 : laCysAsnSerLeuGlyLeuIleMetAspLeuLeuLysValPheValValPheIleHisL : 91 || !!|||.!!|||!.!:!!:!!:!!|||:!!:!!|||:!!|||..!:!! !!:!!|||| laGlyAsnGlyLeuAlaMetValLeuAspIleIleLysIlePheThrLeuValValHisL 26941 : CTGGCAACGGTTTAGCCATGGTTTTGGATATAATCAAGATTTTCACCCTAGTCGTACACA : 27000 92 : ysLysLysPheLeuGlyLeuIleAlaTyrMetGlnLysAsnPheTrpHisPheAspTyrA : 111 |||||||||||||||||||||||! !||||||||||||||||||||||||!!.:!!|||| ysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheTrpHisLeuAsnTyrA 27001 : AGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTTTGGCATTTGAACTACG : 27060 112 : spGlnTyrGluAsnSerLeuIleAlaAspAlaLysGlnMetCysValTyrPheValCysV : 131 |||||||||||||||||:!!:!:|||.!.||||||!:!||||||:!!||||||||||||| spGlnTyrGluAsnSerValLeuAlaGlnAlaLysArgMetCysIleTyrPheValCysV 27061 : ATCAGTACGAGAATTCTGTTTTGGCACAGGCGAAACGAATGTGCATTTACTTCGTGTGcg : 27120 132 : alPheSerPhePheSerGlnSerThrValPheSerTyrMetPheMetProMetIle : 149 ||...||||||||||||||||||:!!|||.!!||||||!!:.!.! !|||:!::!! alLeuSerPhePheSerGlnSerSerValLeuSerTyrIleIleArgProLeuVal 27121 : ttttgtcatttttttctcaatctTCAGTTCTTTCCTATATCATAAGGCCACTTGTA : 27176 vulgar: AfOr94 0 149 . KQ414828.1 26060 27176 + 452 M 54 162 5 0 2 I 0 665 3 0 2 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26061 27176 452 + . gene_id 8 ; sequence AfOr94 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 26061 26222 . + . KQ414828.1 exonerate:protein2genome:local exon 26061 26222 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 26223 26224 . + . intron_id 1 ; splice_site "GG" KQ414828.1 exonerate:protein2genome:local intron 26223 26891 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 26890 26891 . + . intron_id 0 ; splice_site "aa" KQ414828.1 exonerate:protein2genome:local cds 26892 27176 . + . KQ414828.1 exonerate:protein2genome:local exon 26892 27176 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 26061 27176 452 + . alignment_id 8 ; Query AfOr94 ; Align 26061 1 162 ; Align 26892 55 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr94 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 431 Query range: 0 -> 149 Target range: 36171 -> 37287 1 : MetSerLeuLysHisArgArgAspValSerPheSerLeuAlaThrPhePheLeuArgVal : 20 ||||||||||||:!!|||!:!|||||||||.!!!.!||||||!.!||||||||| !||| MetSerLeuLysTyrArgGlnAspValSerIleLysLeuAlaAsnPhePheLeuTyrVal 36172 : ATGAGCTTGAAATATCGTCAAGACGTTTCCATTAAATTAGCCAACTTTTTTCTGTATGTC : 36229 21 : ValGlyPheTrpLeuThrSerSerProLeuGluGluTrpLeuGlyAsnValThrValMet : 40 ||||||||||||!!!.!!:!!!:!! !:!!|||||||||!!! !!|||!.!.!!:!!:!! ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeu 36230 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCGGCGATTCTG : 36289 41 : TyrSerIleIleThrIleValPheSerMetTrpValGlnThr >>>> Target Intr : 55 |||!!!|||:!!|||:!! !!||| !||||||:!!||| ! 669 bp TyrThrIleValThrValPhePheValMetTrpLeuGlnLeu-- 36290 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGag................ : 36336 56 : on 1 >>>> ArgGlyLeuTyrPheSerTrpGlyAspPheGlyValCysThrPheIleA : 71 ... |||||| ::: ... !||||||! !!:!!!:| +-AsnLysLeuTyrVal***PheLeuPheLeuGlnValCysMetTyrMetA 36337 : .........aaaacaaattatacgtctaatttctatttctacaGGTTTGCATGTACATGG : 37051 72 : laCysAsnSerLeuGlyLeuIleMetAspLeuLeuLysValPheValValPheIleHisL : 91 || !!|||.!!|||!.!:!!:!!:!!|||:!!:!!|||:!!||| !:!! !!:!!|||| laGlyAsnGlyLeuAlaMetValLeuAspIleIleLysIlePheSerLeuValValHisL 37052 : CAGGCAACGGTTTAGCCATGGTTTTGGATATAATCAAGATTTTCTCCCTAGTCGTACACA : 37111 92 : ysLysLysPheLeuGlyLeuIleAlaTyrMetGlnLysAsnPheTrpHisPheAspTyrA : 111 |||||||||||||||||||||||! !||||||||||||||||||! !|||!!.:!!|||| ysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheLeuHisLeuAsnTyrA 37112 : AGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTCTTGCATTTGAACTACG : 37171 112 : spGlnTyrGluAsnSerLeuIleAlaAspAlaLysGlnMetCysValTyrPheValCysV : 131 |||||||||||||||||:!!||||||.!.||||||!:!||||||:!!||||||||||||| spGlnTyrGluAsnSerValIleAlaGlnAlaLysArgMetCysIleTyrPheValCysV 37172 : ATCAGTACGAGAATTCTGTTATCGCACAGGCGAAACGAATGTGCATTTACTTCGTGTGcg : 37231 132 : alPheSerPhePheSerGlnSerThrValPheSerTyrMetPheMetProMetIle : 149 ||...||||||||||||||||||:!!|||.!!||||||!!: ! ! !|||:!::!! alLeuSerPhePheSerGlnSerSerValLeuSerTyrIleValArgProLeuVal 37232 : ttttgtcatttttttctcaatctTCAGTTCTTTCCTATATAGTAAGGCCACTTGTA : 37287 vulgar: AfOr94 0 149 . KQ414828.1 36171 37287 + 431 M 54 162 5 0 2 I 0 665 3 0 2 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 36172 37287 431 + . gene_id 9 ; sequence AfOr94 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 36172 36333 . + . KQ414828.1 exonerate:protein2genome:local exon 36172 36333 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 36334 36335 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local intron 36334 37002 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37001 37002 . + . intron_id 0 ; splice_site "aa" KQ414828.1 exonerate:protein2genome:local cds 37003 37287 . + . KQ414828.1 exonerate:protein2genome:local exon 37003 37287 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 36172 37287 431 + . alignment_id 9 ; Query AfOr94 ; Align 36172 1 162 ; Align 37003 55 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr94 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 342 Query range: 294 -> 386 Target range: 28508 -> 28784 295 : AsnLeuThrPheSerTrpArgIleSerPheLeuCysPheLeuIleThrAsnMetCysGln : 314 !!.|||:!!|||..!||||||:!!:!!!!. !||||||! !!!:|||..!:!! !!||| LysLeuSerPheGluTrpArgValAlaLeuAlaCysPheSerMetThrGlyValSerGln 28509 : AAGTTATCATTTGAATGGCGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAA : 28566 315 : LeuTrpMetPheThrTyrSerCysAspCysMetThrArgGluSerValAsnValAlaSer : 334 ||||||||||||||||||||||||||||||!!:|||! !||||||:!!|||:!!|||..! LeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGlu 28567 : CTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAA : 28626 335 : AlaValTyrSerIleProTrpThrArgIleProMetAspLysPheGlyLysMetIleArg : 354 :!!||||||:!! !||||||! !!.!:!!|||||||||||||||||||||::::!!||| SerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArg 28627 : TCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaactgCTAAGA : 28686 355 : LysAspLeuGlnPheValValValArgSerArgArgAlaCysSerLeuThrGlyCysGly : 374 |||||||||||| ! :!!:!!:!!|||:!!|||||| !!! !|||||||||!.!|||||| LysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThrAlaCysGly 28687 : AAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGA : 28746 375 : PhePheAlaIleSerLeuGluThrTyrThrLysIle : 386 ||||||:!!|||||||||||||||!:!||||||:!! PhePheSerIleSerLeuGluThrPheThrLysVal 28747 : TTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 28784 vulgar: AfOr94 294 386 . KQ414828.1 28508 28784 + 342 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28509 28784 342 + . gene_id 10 ; sequence AfOr94 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28509 28784 . + . KQ414828.1 exonerate:protein2genome:local exon 28509 28784 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28509 28784 342 + . alignment_id 10 ; Query AfOr94 ; Align 28509 295 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr94 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 7 -> 66 Target range: 15121 -> 15298 8 : AspValSerPheSerLeuAlaThrPhePheLeuArgValValGlyPheTrpLeuThrSer : 27 |||:!!|||.!!||||||.!!:!! !!|||:!!!:!:!!||||||.!.|||:!!.!!||| AspIleSerIleSerLeuThrSerValPheMetLysIleValGlyLeuTrpMetAlaSer 15122 : GACATATCAATCAGCCTGACGTCCGTTTTCATGAAGATCGTTGGACTGTGGATGGCGTCG : 15179 28 : SerProLeuGluGluTrpLeuGlyAsnValThrValMetTyrSerIleIleThrIleVal : 47 !:!! !!!!|||:!! ! :!! !!|||:!!|||:!! |||!!!:!:|||.!!|||:!! AsnArgPheGluGlnArgValArgAsnIleThrLeuCysTyrThrLeuIleAlaIleLeu 15180 : AACCGTTTCGAGCAACGAGTACGAAATATCACGCTGTGTTACACGCTGATCGCGATTCTC : 15239 48 : PheSerMetTrpValGlnThrArgGlyLeuTyrPheSerTrpGlyAspPheGlyVal : 66 |||:!!:!!|||:!!|||! !! !! !||||||!:!||||||||||||||||||||| PheAlaLeuTrpIleGlnMetThrAspLeuTyrTyrSerTrpGlyAspPheGlyVal 15240 : TTCGCCCTGTGGATACAAATGACGGATTTGTATTACTCGTGGGGAGATTTTGGTGTA : 15298 vulgar: AfOr94 7 66 . KQ414828.1 15121 15298 + 178 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15122 15298 178 + . gene_id 11 ; sequence AfOr94 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 15122 15298 . + . KQ414828.1 exonerate:protein2genome:local exon 15122 15298 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15122 15298 178 + . alignment_id 11 ; Query AfOr94 ; Align 15122 8 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr94 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 147 -> 189 Target range: 27339 -> 27465 148 : MetIleSerAsnIleGlyLysAsnGluSerAspArgMetLeuIlePheAsnMetTrpLeu : 167 :::::::::|||:!!||||||||||||||||||||| ! !||||||:!!||||||!!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPhe 27340 : attttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTC : 27397 168 : AspLeuProLeuSerMetSerProTyrPheGluIleThrTyrValIleGlnAlaLeuCys : 187 |||||||||||||||:!:!!!||||||:::||||||||||||:!!||||||!.!||| AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 27398 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 27457 188 : LeuTyr : 189 :!!!:! IlePhe 27458 : ATTTTC : 27465 vulgar: AfOr94 147 189 . KQ414828.1 27339 27465 + 154 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27340 27465 154 + . gene_id 12 ; sequence AfOr94 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27340 27465 . + . KQ414828.1 exonerate:protein2genome:local exon 27340 27465 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27340 27465 154 + . alignment_id 12 ; Query AfOr94 ; Align 27340 148 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 621 Query range: 150 -> 401 Target range: 2882 -> 6480 151 : AsnIleGlyLysAsnGluSerAspArgAlaLeuProPheAsnLeuTrpIleAspPheProVa : 171 !::|||||||||||||||||||||||| !||| ! !!|||!!!|||||||||.!.|||:! SerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuProIl 2883 : AgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCCGAT : 2943 172 : lGlyLeuSerProTyrPheGluLeuLeuPheIleIleGln >>>> Target Intron 1 : 185 ! !:!!!!!||||||:::|||:::|||||| |||||| 406 bp eThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2944 : AACCATCACACCATactatgaaatattatttacgaTACAGgt.................... : 2987 186 : >>>> IleLeuCysValTyrHisValAlaThrCysTyrIleCysPheAspAsnLeuLeuC : 203 |||!!! !:!! :!!|||..!! ! !!|||:!!|||.!!||||||!!!|||| ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheLeuC 2988 : .....agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTCTGT : 3445 204 : ysIleValAsnLeuHisValAlaGlyGlnPheArgIleLeuGlnHisArgLeuLysAsnLeu : 223 ||!!::!!|||||||||..!||| !||||||||||||||||||:!!||||||..!|||:!! ysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnVal 3446 : GCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAATGTG : 3505 224 : ValAlaAspGluGlyArgGlyAsp<-><-><-><-><->ThrProArgTyrGluAsnCysCy : 239 !!.!! .!.! !|||...||| |||||| ! !!..!:!! || CysGlyAlaAsnGluArgSerAspLysIleSerLysLysThrProSerAsnSerAspGluCy 3506 : TGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATG : 3568 240 : sTyrGluLysLeuArgAspCysValGluGlnHisGlnThrLeuIleGluTyrCysLysArgL : 260 ||||! |||!!!!:!:!!|||:!!:!!|||||||||.!!|||||||||||||||!!.!:!| sTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnLysL 3569 : CTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACAAAC : 3631 261 : euGluAsnIlePheThrValMetValLeuGlyGlnValMetPheUnkAlaValValIleCys : 280 ||:!!.!.:!:||| !:!!.!.||||||!.!||||||:!!.!! ::!:!!:!!!!:||| euGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCys 3632 : TTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGC : 3691 281 : LeuValGlyPheGlnLeuPheLeu >>>> Target Intron 2 >>>> AlaGluThr : 291 |||! !|||!:! ||| ! :!! 457 bp ! !!!:||| LeuAspGlyTyr---LeuValMet++ ++GluAspThr 3692 : CTCGATGGATAT---TTGGTGATGgt.........................agGAAGATACT : 4178 292 : ProAlaSerLysArgAlaSerLeuValValAsnLeuGlyGlyThrPhePheGlnLeuLeuIl : 312 ||| !! !:!!||| !!!!!!!:!! !!:!!||| !||| !.!.! !|||||||||!! ProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuMe 4179 : CCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGAT : 4241 313 : ePheThrTyrSerCysAspAsnLeuIleArgGlnSerValAsnValGlyAsnAlaValPheS : 333 :|||||||||||||||||| !|||||||||:!!|||:!!||||||!.!||||||:!!!:!. tPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIleTyrA 4242 : GTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATATACG : 4304 334 : erGlyProTrpValAsnLeuProMetAsnLysAlaGlyAlaLeuValArgLysAsnLeuIle : 353 .! !! !!|||:!!:!!|||||||||:!!!:!:!!||| !:!!:!!||||||:!!|||! ! spCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAspLeuThr 4305 : ACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGACA : 4364 354 : IleValIleMetArgSerGlnLysValCysCysLeuThrAlaGlyLysPhePheProValSe : 374 .!!|||||| ||||||::! ! !||||||||||||||| !! !|||||||||||||| PheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePheProValSe 4365 : TTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTC : 4427 375 : rLeuGluThrSerThrAla >>>> Target Intron 3 >>>> ValLeuSerThrAl : 385 ||||||||||! !|||:!! 1970 bp |||:!!|||||||| rLeuGluThrTyrThrSer++ ++ValIleSerThrAl 4428 : ACTGGAAACGTACACTTCGgt.........................agGTTATAAGTACAGC : 6430 386 : aMetSerTyrPheThrLeuLeuLysGlnSerSerLeuAspAlaAspAsn : 401 |:!!||||||||||||||||||!:!||| !!! ! !|||::!:!!!:! aValSerTyrPheThrLeuLeuArgGlnArgIleGluAspSerAsnSer 6431 : AGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAGGACAGCAATAGT : 6480 vulgar: AfOr75P 150 401 . KQ414828.1 2882 6480 + 621 M 34 102 5 0 2 I 0 402 3 0 2 M 47 141 G 0 15 M 53 159 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2883 6480 621 + . gene_id 1 ; sequence AfOr75P ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2883 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2883 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 15 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6480 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6480 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2883 6480 621 + . alignment_id 1 ; Query AfOr75P ; Align 2883 151 102 ; Align 3391 185 141 ; Align 3547 232 159 ; Align 3706 286 9 ; Align 4172 289 276 ; Align 6418 381 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 525 Query range: 147 -> 401 Target range: 17818 -> 19918 148 : LeuIleGluAsnIleGlyLysAsnGluSerAspArgAlaLeuProPheAsnLeuTrpIle : 167 :!!:!: |||||||||||||||||||||!!:||| !||||||||||||:!!|||:!! IleLeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpVal 17819 : ATTTTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTC : 17876 168 : AspPheProValGlyLeuSerProTyrPheGluLeuLeuPheIleIleGln >>>> Ta : 185 :!!!!.|||:!!..!:!!!!!||||||!:!|||::: ||| :::||| AsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln++ 17877 : AACTTGCCATTATCAATGACGCCATATTACgaaataactttttcattaCAGgt....... : 17932 186 : rget Intron 1 >>>> IleLeuCysValTyrHisValAlaThrCysTyrIleCysP : 198 110 bp ::!|||! !:!!||||||:!!!.!..! !!|||.!!|||| ++ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysP 17933 : ..................aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgct : 18079 199 : heAspAsnLeuLeuCysIleValAsnLeuHisValAlaGlyGlnPheArgIleLeuGlnH : 218 ||||||||...|||||||||:!!|||||||||!.!||| !|||||||||:!!||||||: heAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnT 18080 : tcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAAT : 18139 219 : isArgLeuLysAsnLeuValAlaAspGluGlyArgGlyAspThrProArgTyrGluAsnC : 238 !!|||:!! !|||:!!..!! ! :!!! ::: ||| .!. yrArgMetAlaAsnMetThrAspLeuLysAspLysGluArgLysGluArgAsnMetLysT 18140 : ACCGAATGGCGAATATGACCGATTTAAAGGacaaagagaggaaagagagaaatatgaAGA : 18199 239 : ysCysTyrGluLysLeuArgAspCysValGluGlnHisGlnThrLeuIleGluTyrCysL : 258 !! .....! ! !! !.....!||| :!!.!...!|||! !!!:||| !! hrSerValSerSerAlaCysPheAlaThrGluCysTyrAsnValLeuLysAspTyrIleA 18200 : CAAGTGTGAGTTCGGCGTGCTTTGCAACAGAATGTTACAACGTTCTCAAAGATTATATCA : 18259 259 : ysArgLeuGluAsnIlePheThrValMetValLeuGlyGlnValMetPheUnkAlaValV : 278 :!!:!! !:!!|||:!:.!!.!! ! ! ! !:!! !:!!||| !:!!| rgGlnHisGlnAsnLeuIleAlaTyrCysAsnLysLeuGluLysValPheAsnIleIleV 18260 : GACAGCATCAGAACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGTTCAATATCATTG : 18319 279 : alIleCysLeuValGlyPheGlnLeuPheLeu >>>> Target Intron 2 >>>> : 289 ||:!: ! ! !:!! !.!. !.!.||| 1005 bp alLeuGlyGlnLeuLeuMetPheSerMetLeu-+ + 18320 : TTCTGGGGCAATTGTTAATGTTCAGCATGTTGat.........................a : 19355 290 : AlaGluThrProAlaSerLysArgAlaSerLeuValValAsnLeuGlyGlyThrPhePh : 308 |||.!.||||||.!!!!!! ||| !! !!!!:!! !!:!!:!!|||!.! !.!.! +AlaAsnThrProThrArgThrArgLeuIlePheIlePheHisIleGlyAlaCysMetCy 19356 : gGCAAATACACCTACCAGAACCCGACTGATTTTCATCTTTCACATAGGAGCATGCATGTG : 19414 309 : eGlnLeuLeuIlePheThrTyrSerCysAspAsnLeuIleArgGlnSerValAsnValGl : 328 !|||||||||!!:|||||||||||||||||| !:!!||||||:!!|||..!!:!..!!. sGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSerThrSerThrAl 19415 : TCAATTGCTGATGTTTACCTACAGCTGCGACTGCATCATAAGAGAAAGCACGAGCACCGC : 19474 329 : yAsnAlaValPheSerGlyProTrpValAsnLeuProMetAsnLysAlaGlyAlaLeuVa : 348 !.!.||||||!:!||||||||||||..! !|||||||||!:! !! !||| !:!!:! aGluAlaValTyrSerGlyProTrpThrLeuLeuProMetSerAlaAspGlyLysMetIl 19475 : CGAGGCGGTGTACAGCGGTCCCTGGACACTTTTACCAATGAGCGCAGACGGAAAAATGAT : 19534 349 : lArgLysAsnLeuIleIleValIleMetArgSerGlnLysValCysCysLeuThrAlaGl : 368 !||||||:!!|||!!::!!|||||||||||||||... ! !||||||||||||||| ! eArgLysAspLeuMetLeuValIleMetArgSerSerValProCysCysLeuThrAlaAr 19535 : AAGGAAAGATTTGATGCTCGTTATCATGAGATCGAGCGTACCTTGTTGCTTGACAGCCAG : 19594 369 : yLysPhePheProValSerLeuGluThrSerThrAla >>>> Target Intron 3 : 381 ! !|||||| !|||||||||||||||! !|||!.! 223 bp gGlyPhePheValValSerLeuGluThrTyrThrGly++ 19595 : AGGATTCTTCGTCGTGTCTTTAGAAACGTACACAGGGgt..................... : 19635 382 : >>>> ValLeuSerThrAlaMetSerTyrPheThrLeuLeuLysGlnSerSerLeuAsp : 398 ||||||||||||||| ||||||||||||||||||||||||!!!||| !:!! ++ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuLysGlnArgSerGluAsn 19636 : ....agGTTTTAAGCACCGCAGCCTCATACTTTACGTTGCTGAAGCAAAGATCAGAGAAT : 19907 399 : AlaAspAsn : 401 ||||||!:! AlaAspSer 19908 : GCCGACAGT : 19918 vulgar: AfOr75P 147 401 . KQ414828.1 17818 19918 + 525 M 37 111 5 0 2 I 0 106 3 0 2 M 104 312 5 0 2 I 0 1001 3 0 2 M 92 276 5 0 2 I 0 219 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17819 19918 525 + . gene_id 2 ; sequence AfOr75P ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17819 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17819 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18351 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18351 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18352 18353 . + . intron_id 2 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 18352 19356 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19918 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19918 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17819 19918 525 + . alignment_id 2 ; Query AfOr75P ; Align 17819 148 111 ; Align 18040 185 312 ; Align 19357 289 276 ; Align 19856 381 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 396 Query range: 234 -> 401 Target range: 32975 -> 34322 235 : TyrGluAsnCysCysTyrGluLysLeuArgAspCysValGluGlnHisGlnThrLeuIle : 254 |||..!.!. |||||| |||!!!!:!:!!|||:!!:!!|||||||||.!!|||||| TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 32976 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTaatt : 33033 255 : GluTyrCysLysArgLeuGluAsnIlePheThrValMetValLeuGlyGlnValMetPhe : 274 |||:::|||::: ||||||.!.:!!|||||||||!!:|||||||||||||||:!:.!. GluPheCysGluIleLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMet 33034 : gaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTAATG : 33093 275 : UnkAlaValValIleCysLeuValGlyPheGlnLeuPheLeu >>>> Target Intr : 289 ::!:!!:!!||||||!!!!.!|||!:!:!!:!!.!!||| 406 bp PheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeu++ 33094 : TTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGgt................ : 33140 290 : on 1 >>>> AlaGluThrProAlaSerLysArgAlaSerLeuValValAsnLeuGlyG : 305 ! ! !||| !..!..!|||!.!:!!!!!..! ! !||| ! ++IleThrLeuProPheGluSerArgValAlaPheThrCysPheLeuIleT 33141 : .........agATAACGTTACCATTTGAATCGCGCGTTGCTTTCACGTGCTTCTTGATTA : 33592 306 : lyThrPhePheGlnLeuLeuIlePheThrTyrSerCysAspAsnLeuIleArgGlnSerV : 325 ! ! ! !||||||! !!!:|||||||||||||||:!! !:!!! !! !:!!|||: hrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAsnCysIleThrThrGluSerL 33593 : CGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCAATTGCATAACAACAGAAAGCC : 33652 326 : alAsnValGlyAsnAlaValPheSerGlyProTrpValAsnLeuProMetAsnLysAlaG : 345 !!|||:!!!.!.!.:!!|||!:!:!!|||||||||:!!||||||||||||:::||| | euAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheG 33653 : TGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATggataaatttg : 33712 346 : lyAlaLeuValArgLysAsnLeuIleIleValIleMetArgSerGlnLysValCysCysL : 365 || |||:!!||||||:!!||| !:!::!!|||:!!|||:!!::!::! !! !..!| lyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerAlaL 33713 : gaaaactgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCGCTT : 33772 366 : euThrAlaGlyLysPhePheProValSerLeuGluThrSerThrAla >>>> Target : 381 |||||||| !! !|||||| !!:!!!!!|||||||||! !||| ! 4 euThrAlaCysGlyPhePheSerIleThrLeuGluThrPheThrLys++ 33773 : TGACTGCCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTACTAAGgt........... : 33822 382 : Intron 2 >>>> ValLeuSerThrAlaMetSerTyrPheThrLeuLeuLysGlnSe : 395 40 bp :!!:!!||||||:!!||||||||||||||||||||||||||||| ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnSe 33823 : ..............agATCATGAGTACATCAATGTCGTATTTCACCCTACTAAAACAAAG : 34302 396 : rSerLeuAspAlaAspAsn : 401 |:!! !|||.!!! ||| rAlaGluAspThrValAsn 34303 : TGCCGAGGACACAGTAAAT : 34322 vulgar: AfOr75P 234 401 . KQ414828.1 32975 34322 + 396 M 54 162 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32976 34322 396 + . gene_id 3 ; sequence AfOr75P ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32976 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32976 33137 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 2 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34322 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34322 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32976 34322 396 + . alignment_id 3 ; Query AfOr75P ; Align 32976 235 162 ; Align 33544 289 276 ; Align 34260 381 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 327 Query range: 234 -> 381 Target range: 22896 -> 23829 235 : TyrGluAsnCysCysTyrGluLysLeuArgAspCysValGluGlnHisGlnThrLeuIle : 254 |||..!.!. |||||| |||!!!!:!:!!|||:!!:!!|||||||||.!!|||||| TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 22897 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATT : 22954 255 : GluTyrCysLysArgLeuGluAsnIlePheThrValMetValLeuGlyGlnValMetPhe : 274 |||!:!||| !! !||||||.!.:!!|||||||||!!:|||||||||||||||:!:.!. GluPheCysAlaThrLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMet 22955 : GAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCTAATG : 23014 275 : UnkAlaValValIleCysLeuValGlyPheGlnLeuPheLeuAlaGluThrProAlaSer : 294 ...::!:!!:!!||||||!!!:!!|||!:!|||:!!.!!|||!.!...! ! !::!! ! SerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeuValSerIleGluSerTyr 23015 : TCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGGTGAGTATCGAAAGCTAT : 23074 295 : LysArgAla{S} >>>> Target Intron 1 >>>> {er}LeuValValAsnLeu : 303 !!.!:! !{|} 492 bp {||}!!!!.! ! !||| AsnLysTyr{S}++ -+{er}PheAlaCysPheLeu 23075 : AATAAATAC{T}gt.........................tg{CT}TTCGCGTGCTTCTTG : 23593 304 : GlyGlyThrPhePheGlnLeuLeuIlePheThrTyrSerCysAspAsnLeuIleArgGln : 323 ! ! !.!. !||||||! !!!:|||||||||||||||||| !:!!! !! !:!! MetMetGlyMetSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGlu 23594 : ATGATGGGCATGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCATAACAACAGAA : 23653 324 : SerValAsnValGlyAsnAlaValPheSerGlyProTrpValAsnLeuProMetAsnLys : 343 |||:!!|||:!!!.!.!.:!!|||!:!:!!|||||||||:!!||||||||||||:!!||| SerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLys 23654 : AGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATGGACAAA : 23713 344 : AlaGlyAlaLeuValArgLysAsnLeuIleIleValIleMetArgSerGlnLysValCys : 363 !||| !|||:!!||||||.!.||| !!!::!!|||:!!|||:!!::!::! !! ! PheGlyLysLeuLeuArgLysGluLeuGlnMetLeuIleLeuArgAlaArgArgProSer 23714 : TTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGGGCGAGACGACCTTCC : 23773 364 : CysLeuThrAlaGlyLysPhePheProValSerLeuGluThrSerThrAlaVal : 381 ..!||||||||| !! !|||||| !!:!!||||||||||||! !||| !||| AlaLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 23774 : GCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 23829 vulgar: AfOr75P 234 381 . KQ414828.1 22896 23829 + 327 M 63 189 S 0 1 5 0 2 I 0 488 3 0 2 S 1 2 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22897 23829 327 + . gene_id 4 ; sequence AfOr75P ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22897 23086 . + . KQ414828.1 exonerate:protein2genome:local exon 22897 23086 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23087 23088 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23087 23578 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 23577 23578 . + . intron_id 0 ; splice_site "TG" KQ414828.1 exonerate:protein2genome:local cds 23579 23829 . + . KQ414828.1 exonerate:protein2genome:local exon 23579 23829 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22897 23829 327 + . alignment_id 4 ; Query AfOr75P ; Align 22897 235 189 ; Align 23581 299 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 251 Query range: 308 -> 401 Target range: 28565 -> 29254 309 : GlnLeuLeuIlePheThrTyrSerCysAspAsnLeuIleArgGlnSerValAsnValGly : 328 ||||||! !!!:|||||||||||||||||| !:!!! !! !:!!|||:!!|||:!!!.! GlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAla 28566 : CAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCT : 28623 329 : AsnAlaValPheSerGlyProTrpValAsnLeuProMetAsnLysAlaGlyAlaLeuVal : 348 .!.:!!|||!:!:!!|||||||||:!!||||||||||||:::||| ||| |||:!! GluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeu 28624 : GAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaactgCTA : 28683 349 : ArgLysAsnLeuIleIleValIleMetArgSerGlnLysValCysCysLeuThrAlaGly : 368 ||||||:!!||| !:!::!!|||:!!|||:!!::!::! !! !! !||||||||| !! ArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThrAlaCys 28684 : AGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGT : 28743 369 : LysPhePheProValSerLeuGluThrSerThrAla >>>> Target Intron 1 > : 381 !|||||| !!:!!||||||||||||! !||| ! 410 bp GlyPhePheSerIleSerLeuGluThrPheThrLys++ 28744 : GGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt...................... : 28784 382 : >>> ValLeuSerThrAlaMetSerTyrPheThrLeuLeuLysGlnSerSerLeuAspA : 399 :!!:!!||||||:!!|||||||||||||||||||||||||||!!!! ! !|||. ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnCysIleGluAspT 28785 : ...agATCATGAGTACATCAATGTCGTATTTCACATTATTAAAACAATGTATCGAGGACA : 29246 400 : laAspAsn : 401 !!! !||| hrValAsn 29247 : CGGTTAAT : 29254 vulgar: AfOr75P 308 401 . KQ414828.1 28565 29254 + 251 M 72 216 5 0 2 I 0 406 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28566 29254 251 + . gene_id 5 ; sequence AfOr75P ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 28566 28781 . + . KQ414828.1 exonerate:protein2genome:local exon 28566 28781 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 28782 28783 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 28782 29191 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 29190 29191 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 29192 29254 . + . KQ414828.1 exonerate:protein2genome:local exon 29192 29254 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28566 29254 251 + . alignment_id 5 ; Query AfOr75P ; Align 28566 309 216 ; Align 29192 381 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 230 Query range: 150 -> 223 Target range: 37459 -> 37985 151 : AsnIleGlyLysAsnGluSerAspArgAlaLeuProPheAsnLeuTrpIleAspPhePro : 170 |||:!!|||||||||||||||||||||! !! ! !!:!:!!:!!|||:!!|||.!.||| AsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuPro 37460 : AATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCA : 37517 171 : ValGlyLeuSerProTyrPheGluLeuLeuPheIleIleGln >>>> Target Intr : 185 :!!..!:!!!!!||||||:::|||::: ::!||||||||| 307 bp LeuSerIleThrProTyrTyrGluIleThrTyrIleIleGln++ 37518 : TTATCCATAACAccatattatgaaattacttACATAATACAGgt................ : 37564 186 : on 1 >>>> IleLeuCysValTyrHisValAlaThrCysTyrIleCysPheAspAsnL : 201 !|||! !||||||!!.|||::!.!!||||||:!!||||||||| : ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleI 37565 : .........agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatca : 37917 202 : euLeuCysIleValAsnLeuHisValAlaGlyGlnPheArgIleLeuGlnHisArgLeuL : 221 ::... |||::: |||||||||||||||||||||||||||||||||:!!|||:!! lePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleA 37918 : tttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTG : 37977 222 : ysAsnLeu : 223 |||:!! laAsnVal 37978 : CCAATGTG : 37985 vulgar: AfOr75P 150 223 . KQ414828.1 37459 37985 + 230 M 34 102 5 0 2 I 0 303 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37460 37985 230 + . gene_id 6 ; sequence AfOr75P ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37460 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37460 37561 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 37985 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 37985 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37460 37985 230 + . alignment_id 6 ; Query AfOr75P ; Align 37460 151 102 ; Align 37869 185 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 229 Query range: 286 -> 383 Target range: 12463 -> 12754 287 : PheLeuAlaGluThrProAlaSerLysArgAlaSerLeuValValAsnLeuGlyGlyThr : 306 ||| |||.!.||| !! !:!!!:!|||::!! !!!!:!! !! !:!! !!|||.!! Phe***AlaAsnThrSerLeuAlaArgArgSerIlePheMetPheLeuIleCysGlyAla 12464 : ttttagGCTAATACTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCC : 12521 307 : PhePheGlnLeuLeuIlePheThrTyrSerCysAspAsnLeuIleArgGlnSerValAsn : 326 .!. !! !|||!!!!!:|||||||||||||||:!!! :!!|||..!||||||! !||| MetValLeuLeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsn 12522 : ATGGTTTTATTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAAT : 12581 327 : ValGlyAsnAlaValPheSerGlyProTrpValAsnLeuProMetAsnLysAlaGlyAla : 346 :!!!.! !|||!.!!:!|||!.!! !|||..!..!:!!||||||||||||.!!||| ! IleAlaPheAlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLys 12582 : ATTGCTTTTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAA : 12641 347 : LeuValArgLysAsnLeuIleIleValIleMetArgSerGlnLysValCysCysLeuThr : 366 !:!!||| ! :!!||||||!!:|||||| !||||||::!::!||||||||||||||| LysLeuArgHisAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThr 12642 : AAGCTACGGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACT : 12701 367 : AlaGlyLysPhePheProValSerLeuGluThrSerThrAlaValLeuSer : 383 |||..! !||||||||||||||||||||||||! !|||.!!||| !||| AlaAsnGlyPhePheProValSerLeuGluThrTyrThrThrValSerSer 12702 : GCGAATGGATTTTTCCCTGTGTCCTTAGAAACTTATACTACGGTGAGTTCA : 12754 vulgar: AfOr75P 286 383 . KQ414828.1 12463 12754 + 229 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 12464 12754 229 + . gene_id 7 ; sequence AfOr75P ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 12464 12754 . + . KQ414828.1 exonerate:protein2genome:local exon 12464 12754 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 12464 12754 229 + . alignment_id 7 ; Query AfOr75P ; Align 12464 287 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 203 Query range: 308 -> 381 Target range: 38541 -> 38760 309 : GlnLeuLeuIlePheThrTyrSerCysAspAsnLeuIleArgGlnSerValAsnValGly : 328 ||||||! !!!:|||||||||||||||||| !:!!! !! !:!!|||:!!|||:!!!.! GlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAla 38542 : CAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCT : 38599 329 : AsnAlaValPheSerGlyProTrpValAsnLeuProMetAsnLysAlaGlyAlaLeuVal : 348 .!.:!!|||!:!:!!|||||||||:!!||||||||||||:::||| ||| |||:!! GluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeu 38600 : GAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaactgCTA : 38659 349 : ArgLysAsnLeuIleIleValIleMetArgSerGlnLysValCysCysLeuThrAlaGly : 368 ||||||:!!||| !:!::!!|||:!!|||:!!::!::! !! !! !||||||||| !! ArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThrAlaCys 38660 : AGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGT : 38719 369 : LysPhePheProValSerLeuGluThrSerThrAlaVal : 381 !|||||| !!:!!||||||||||||! !||| !||| GlyPhePheSerIleSerLeuGluThrPheThrLysVal 38720 : GGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 38760 vulgar: AfOr75P 308 381 . KQ414828.1 38541 38760 + 203 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38542 38760 203 + . gene_id 8 ; sequence AfOr75P ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38542 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38542 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38542 38760 203 + . alignment_id 8 ; Query AfOr75P ; Align 38542 309 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 194 Query range: 147 -> 223 Target range: 32386 -> 32921 148 : LeuIleGluAsnIleGlyLysAsnGluSerAspArgAlaLeuProPheAsnLeuTrpIle : 167 :::::: |||:!!|||||||||||||||||||||! !! ! !!:!:!!:!!|||:!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 32387 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 32444 168 : AspPheProValGlyLeuSerProTyrPheGluLeuLeuPheIleIleGlnIleLeuCys : 187 |||.!.|||:!!..!:!!!!!||||||:::|||::: ::!|||||||||:!!||| AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 32445 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 32504 188 : ValTyrHisValAla{T} >>>> Target Intron 1 >>>> {hr}CysTyrIle : 196 :!!!:! ! {!} 307 bp { !}||||||:!! IlePheSerArgGln{M}-+ ++{et}CysTyrLeu 32505 : ATTTTCTCAAGGCaa{a}ct.........................ag{TG}TGTTACCTT : 32838 197 : CysPheAspAsnLeuLeuCysIleValAsnLeuHisValAlaGlyGlnPheArgIleLeu : 216 ||||||||||||:::... |||::: !|||||||||||||||||||||||||||||| CysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeu 32839 : TGCTttgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTA : 32898 217 : GlnHisArgLeuLysAsnLeu : 223 |||:!!|||:!! |||:!! GlnTyrArgIleAlaAsnVal 32899 : CAATACAGAATTGCCAATGTG : 32921 vulgar: AfOr75P 147 223 . KQ414828.1 32386 32921 + 194 M 45 135 S 0 1 5 0 2 I 0 303 3 0 2 S 1 2 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32387 32921 194 + . gene_id 9 ; sequence AfOr75P ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32387 32522 . + . KQ414828.1 exonerate:protein2genome:local exon 32387 32522 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32523 32524 . + . intron_id 1 ; splice_site "ct" KQ414828.1 exonerate:protein2genome:local intron 32523 32829 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32828 32829 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32830 32921 . + . KQ414828.1 exonerate:protein2genome:local exon 32830 32921 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32387 32921 194 + . alignment_id 9 ; Query AfOr75P ; Align 32387 148 135 ; Align 32832 194 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 234 -> 300 Target range: 38039 -> 38237 235 : TyrGluAsnCysCysTyrGluLysLeuArgAspCysValGluGlnHisGlnThrLeuIle : 254 |||..!.!. |||||| |||!!!!:!:!!|||:!!:!!|||||||||.!!|||||| TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 38040 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATT : 38097 255 : GluTyrCysLysArgLeuGluAsnIlePheThrValMetValLeuGlyGlnValMetPhe : 274 |||!:!||| !! !||||||.!.:!!|||||||||!!:!.!||||||||||||:!:.!. GluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnValLeuMet 38098 : GAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCTAATG : 38157 275 : UnkAlaValValIleCysLeuValGlyPheGlnLeuPheLeuAlaGluThrProAlaSer : 294 ::!:!!:!!||||||!!!|||! !!:!||| !.!!|||!.!...! ! ! !! ! PheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeuValSerIleValArgTyr 38158 : TTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGGTGAGTATCGTTCGCTAT : 38217 295 : LysArgAlaSerLeuVal : 300 !!.!:! !|||:::::: AsnLysTyrSerMetIle 38218 : AATAAATACTCTatgata : 38237 vulgar: AfOr75P 234 300 . KQ414828.1 38039 38237 + 161 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38040 38237 161 + . gene_id 10 ; sequence AfOr75P ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38040 38237 . + . KQ414828.1 exonerate:protein2genome:local exon 38040 38237 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38040 38237 161 + . alignment_id 10 ; Query AfOr75P ; Align 38040 235 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 7 -> 72 Target range: 15121 -> 15316 8 : AspIleSerIleIleTrpThrSerPheLeuMetLysIleValGlyLeuTrpLeuAlaAla : 27 ||||||||||||! ! !|||||| !!!!!|||||||||||||||||||||:!!|||:!! AspIleSerIleSerLeuThrSerValPheMetLysIleValGlyLeuTrpMetAlaSer 15122 : GACATATCAATCAGCCTGACGTCCGTTTTCATGAAGATCGTTGGACTGTGGATGGCGTCG : 15179 28 : AspArgAsnGluGlnArgCysArgAspPheAlaLeuIleTyrThrValGlyThrLeuPhe : 47 :!!||| !||||||||| |||:!!.!!.!!||| !||||||:!! !.!!:!!.!! AsnArgPheGluGlnArgValArgAsnIleThrLeuCysTyrThrLeuIleAlaIleLeu 15180 : AACCGTTTCGAGCAACGAGTACGAAATATCACGCTGTGTTACACGCTGATCGCGATTCTC : 15239 48 : IleSerValCysIleAlaPheArgAspIleTyrHisSerTrpGlyAsnPheSerAspSer : 67 .!!:!!:!!!! ||| !.!.! !|||:!:|||:!!|||||||||:!!|||.!!! ||| PheAlaLeuTrpIleGlnMetThrAspLeuTyrTyrSerTrpGlyAspPheGlyValSer 15240 : TTCGCCCTGTGGATACAAATGACGGATTTGTATTACTCGTGGGGAGATTTTGGTGTAAGT : 15299 68 : ValPheIleCysCys : 72 !.! ! !||| AlaArgGlyIleCys 15300 : GCGAGGGGAATTTGT : 15316 vulgar: AfOr75P 7 72 . KQ414828.1 15121 15316 + 154 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15122 15316 154 + . gene_id 11 ; sequence AfOr75P ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 15122 15316 . + . KQ414828.1 exonerate:protein2genome:local exon 15122 15316 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15122 15316 154 + . alignment_id 11 ; Query AfOr75P ; Align 15122 8 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 239 -> 288 Target range: 11017 -> 11164 240 : TyrGluLysLeuArgAspCysValGluGlnHisGlnThrLeuIleGluTyrCysLysArg : 259 |||||||||!!!!:!..!! !|||..!||||||||||||||||||!!:|||! !:!!!:! TyrGluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLys 11018 : TACGAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAG : 11075 260 : LeuGluAsnIlePheThrValMetValLeuGlyGlnValMetPheUnkAlaValValIle : 279 ||||||:!!:!!!:!||| !!!::!!||||||||||||:!:.!. ::!|||:!!||| LeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIle 11076 : CTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATT : 11135 280 : CysLeuValGlyPheGlnLeuPheLeu : 288 |||||| !!|||!:!|||:!!!!.||| CysLeuPheGlyTyrGlnIleLeuLeu 11136 : TGCCTCTTTGGTTATCAGATATTATTG : 11164 vulgar: AfOr75P 239 288 . KQ414828.1 11017 11164 + 147 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 11018 11164 147 + . gene_id 12 ; sequence AfOr75P ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 11018 11164 . + . KQ414828.1 exonerate:protein2genome:local exon 11018 11164 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 11018 11164 147 + . alignment_id 12 ; Query AfOr75P ; Align 11018 240 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 6 -> 67 Target range: 31123 -> 31306 7 : LysAspIleSerIleIleTrpThrSerPheLeuMetLysIleValGlyLeuTrpLeuAla : 26 :!!|||:!!|||.!!! !! .!!!:!|||!!!:!! ! :!!||||||!!!|||!!!||| GlnAspValSerPheArgLeuAlaAsnPhePheLeuTyrValValGlyPheTrpPheAla 31124 : CAAGACGTTTCCTTTAGATTAGCCAACTTTTTTCTGTATGTTGTCGGCTTCTGGTTCGCC : 31181 27 : AlaAspArgAsnGluGlnArgCysArgAspPheAlaLeuIleTyrThrValGlyThrLeu : 46 |||:!!|||! |||:!! !!! !|||:!! !|||:!!:!:||||||:!!! !|||:!! AlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeuTyrThrIleValThrVal 31182 : GCTAATCGTATAGAGGAATGGTTCAGAAACGCTGCGATTCTGTATACCATTGTCACGGTC : 31241 47 : PheIleSerValCysIleAlaPheArgAspIleTyrHisSerTrpGlyAsnPheSerAsp : 66 |||.!! !:!!!! :!! !.!.|||! :!!||| !|||||||||||||||..!! PhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSerTrpGlyAsnPheGluVal 31242 : TTCTTTGTCATGTGGCTTCAGCTGAGAGGGCTTTATTTCTCCTGGGGAAACTTTGAAGTA : 31301 67 : Ser : 67 ||| Ser 31302 : AGT : 31306 vulgar: AfOr75P 6 67 . KQ414828.1 31123 31306 + 133 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31124 31306 133 + . gene_id 13 ; sequence AfOr75P ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 31124 31306 . + . KQ414828.1 exonerate:protein2genome:local exon 31124 31306 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31124 31306 133 + . alignment_id 13 ; Query AfOr75P ; Align 31124 7 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 179 -> 223 Target range: 22710 -> 22842 180 : LeuPheIleIleGlnIleLeuCysValTyrHisValAlaThrCysTyrIleCysPheAsp : 199 ::: ::!! ||| !|||! !||||||!!.|||::!.!!||||||:!!||||||||| IleSerLeuThrGlnAlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAsp 22711 : atttctctCACGCAGGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgat : 22768 200 : AsnLeuLeuCysIleValAsnLeuHisValAlaGlyGlnPheArgIleLeuGlnHisArg : 219 :::... |||::: |||||||||||||||||||||||||||||||||:!!||| IleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 22769 : atcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 22828 220 : LeuLysAsnLeu : 223 :!! |||:!! IleAlaAsnVal 22829 : ATTGCCAATGTG : 22842 vulgar: AfOr75P 179 223 . KQ414828.1 22710 22842 + 132 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22711 22842 132 + . gene_id 14 ; sequence AfOr75P ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 22711 22842 . + . KQ414828.1 exonerate:protein2genome:local exon 22711 22842 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22711 22842 132 + . alignment_id 14 ; Query AfOr75P ; Align 22711 180 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 147 -> 196 Target range: 27339 -> 27486 148 : LeuIleGluAsnIleGlyLysAsnGluSerAspArgAlaLeuProPheAsnLeuTrpIle : 167 :::::: |||:!!|||||||||||||||||||||! !! ! !|||:!!:!!|||.!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPhe 27340 : attttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTC : 27397 168 : AspPheProValGlyLeuSerProTyrPheGluLeuLeuPheIleIleGlnIleLeuCys : 187 |||.!.|||:!!..!:!!!!!||||||:::|||::: ::!|||||||||:!!||| AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 27398 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 27457 188 : ValTyrHisValAlaThrCysTyrIle : 196 :!!!:! ||| :::||| IlePheSerArgGluThrIlePheIle 27458 : ATTTTCTCAAGggaaacaatatttata : 27486 vulgar: AfOr75P 147 196 . KQ414828.1 27339 27486 + 132 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27340 27486 132 + . gene_id 15 ; sequence AfOr75P ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27340 27486 . + . KQ414828.1 exonerate:protein2genome:local exon 27340 27486 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27340 27486 132 + . alignment_id 15 ; Query AfOr75P ; Align 27340 148 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 147 -> 196 Target range: 22307 -> 22454 148 : LeuIleGluAsnIleGlyLysAsnGluSerAspArgAlaLeuProPheAsnLeuTrpIle : 167 :::::: |||:!!|||||||||||||||||||||! !! ! !!:!:!!:!!|||:!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 22308 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 22365 168 : AspPheProValGlyLeuSerProTyrPheGluLeuLeuPheIleIleGlnIleLeuCys : 187 |||.!.|||:!!..!:!!!!!||||||:::|||::: ::!|||||||||:!!||| AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 22366 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 22425 188 : ValTyrHisValAlaThrCysTyrIle : 196 :!!!:! ! ||| :::||| IlePheSerArgGlnThrIlePheIle 22426 : ATTTTCTCAAGGCaaactatatttata : 22454 vulgar: AfOr75P 147 196 . KQ414828.1 22307 22454 + 131 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22308 22454 131 + . gene_id 16 ; sequence AfOr75P ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 22308 22454 . + . KQ414828.1 exonerate:protein2genome:local exon 22308 22454 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22308 22454 131 + . alignment_id 16 ; Query AfOr75P ; Align 22308 148 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 6 -> 67 Target range: 21048 -> 21231 7 : LysAspIleSerIleIleTrpThrSerPheLeuMetLysIleValGlyLeuTrpLeuAla : 26 :!!|||:!!|||:!!! !! .!!!:!|||! !:!! ! :!!||||||!!!|||!!!||| GlnAspValSerValArgLeuAlaAsnPheTyrLeuTyrValValGlyPheTrpPheAla 21049 : CAAGACGTTTCCGTTAGATTAGCCAATTTTTATCTGTATGTCGTCGGCTTCTGGTTCGCC : 21106 27 : AlaAspArgAsnGluGlnArgCysArgAspPheAlaLeuIleTyrThrValGlyThrLeu : 46 |||:!!|||! |||:!! !!! ! !!:!! |||:!!:!:||||||:!!! !|||:!! AlaAsnArgIleGluGluTrpPheGlyAsnAlaAlaIleLeuTyrThrIleValThrVal 21107 : GCTAATCGTATAGAGGAATGGTTCGGAAACGCGGCGATTCTGTATACCATTGTCACGGTC : 21166 47 : PheIleSerValCysIleAlaPheArgAspIleTyrHisSerTrpGlyAsnPheSerAsp : 66 |||.!! !:!!!! :!! !.!.|||! :!!||| !|||||||||||||||..!! PhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSerTrpGlyAsnPheGluVal 21167 : TTCTTTGTCATGTGGCTTCAGCTGAGAGGACTTTATTTCTCCTGGGGAAACTTTGAAGTA : 21226 67 : Ser : 67 ||| Ser 21227 : AGT : 21231 vulgar: AfOr75P 6 67 . KQ414828.1 21048 21231 + 128 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21049 21231 128 + . gene_id 17 ; sequence AfOr75P ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 21049 21231 . + . KQ414828.1 exonerate:protein2genome:local exon 21049 21231 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21049 21231 128 + . alignment_id 17 ; Query AfOr75P ; Align 21049 7 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 187 -> 223 Target range: 10840 -> 10948 188 : ValTyrHisValAlaThrCysTyrIleCysPheAspAsnLeuLeuCysIleValAsnLeu : 207 :!!||| !..!!.!! !||||||.!!||||||||||||:!!!!!||||||:!!!:!:!! LeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerVal 10841 : CTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTG : 10898 208 : HisValAlaGlyGlnPheArgIleLeuGlnHisArgLeuLysAsnLeu : 223 |||:!!::!|||||||||||||||||||||:!!||||||! !!!.||| HisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeu 10899 : CATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTG : 10948 vulgar: AfOr75P 187 223 . KQ414828.1 10840 10948 + 126 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10841 10948 126 + . gene_id 18 ; sequence AfOr75P ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 10841 10948 . + . KQ414828.1 exonerate:protein2genome:local exon 10841 10948 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10841 10948 126 + . alignment_id 18 ; Query AfOr75P ; Align 10841 188 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr77 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1284 Query range: 0 -> 401 Target range: 15100 -> 19897 1 : MetGlyPheLeuAsnThrAspAspIleSerMetIleMetThrAlaThrPheMetLysLeu : 20 |||.!! !!!!!.!|||||||||||||||!!:! !:!!|||:!!..!|||||||||:!! MetSerSerPheThrThrAspAspIleSerIleSerLeuThrSerValPheMetLysIle 15101 : ATGAGTAGTTTCACCACCGATGACATATCAATCAGCCTGACGTCCGTTTTCATGAAGATC : 15158 21 : ValGlyLeuTrpThrAlaLysAspArgHisGluGlnArgAlaArgLysPheAlaLeuIle : 40 ||||||||||||! !|||..!:!!||| !|||||||||!.!|||!!..!!.!!||| ! ValGlyLeuTrpMetAlaSerAsnArgPheGluGlnArgValArgAsnIleThrLeuCys 15159 : GTTGGACTGTGGATGGCGTCGAACCGTTTCGAGCAACGAGTACGAAATATCACGCTGTGT : 15218 41 : TyrThrLeuAlaThrIleLeuPheAlaLeuTrpIleGluPheThrAspPheTyrTyrSer : 60 ||||||||| !.!!|||||||||||||||||||||:!!.!.||||||!!.||||||||| TyrThrLeuIleAlaIleLeuPheAlaLeuTrpIleGlnMetThrAspLeuTyrTyrSer 15219 : TACACGCTGATCGCGATTCTCTTCGCCCTGTGGATACAAATGACGGATTTGTATTACTCG : 15278 61 : PheGlyAspPheSer >>>> Target Intron 1 >>>> ThrCysLeuPheAsnV : 71 !::|||||||||.!! 891 bp .!!||||||!:!!.!! TrpGlyAspPheGly++ ++AlaCysLeuTyrThrA 15279 : TGGGGAGATTTTGGTgt.........................agGCCTGTTTATATACTG : 16202 72 : alCysAsnIleMetTyrIleThrMetProLeuLeuLysIlePheIleIleValSerAsnL : 91 .!|||||||||:!:! :!!|||!!:|||!!!|||||||||.!!:!!:!::!!:!!:::| laCysAsnIleLeuSerLeuThrIleProPheLeuLysIleLeuValLeuLeuAlaHisL 16203 : CATGCAACATTTTATCGTTAACAATACCGTTTCTCAAGATACTCGTCTTGCTTGCAcaca : 16262 92 : ysLysAspPhePheTyrLeuIlePheTyrThrGlnAsnAsnPheTyrLysAspAsnTyrA : 111 ||...|||||||||:::||||||.!.:!! !|||....!.|||! ! ! :!!|||: ysAsnAspPhePheHisLeuIleLeuHisLeuGlnArgGluPheLeuHisAlaAspTyrA 16263 : aaaatgatttttttcatttgattcTGCACCTACAACGAGAATTCTTGCATGCAGATTACG : 16322 112 : snAsnLysArgGluGlnGlnIlePheThrAsnCysArgArgGlnCysThrIlePheValC : 131 !!:!! !|||:!!:!!|||!!. !..!|||!:!||||||||||||.!!||||||| spAsp---TyrGluLysLysIleLeuLeuGlyCysGlnArgGlnCysThrPhePheValC 16323 : ACGAC---TACGAGAAAAAGATTTTGCTCGGTTGCCAACGTCAATGTACCTTCTTCGTTT : 16379 132 : ysPheLeuThrPheSerThrLysGlyThrLeuValCysTyrIleIleSerProLeuVal{ : 151 |||||!!!|||.!!! !||||||||||||:!!:!!! ||||||:!!!:!||||||:!!{ ysPhePheThrLeuPheThrLysGlyThrValIleSerTyrIleValAsnProLeuIle{ 16380 : GTTTCTTCACACTTTTCACTAAAGGAACTGTTATCTCGTACATCGTTAATCCGCTTATT{ : 16439 152 : G} >>>> Target Intron 2 >>>> {lu}AsnIleGlyLysAsnGluSerGluA : 160 !} 1386 bp { !}||||||||||||||||||||||||| A}++ ++{la}AsnIleGlyLysAsnGluSerGluA 16440 : G}gt.........................ag{ca}aatattggaaaaaatgagTCAGAGA : 17852 161 : rgValLeuProPheAsnMetTrpValAsnLeuProLeuSerThrSerProTyrTyrGluI : 180 ||:!!||||||||||||||||||||||||||||||||||||! !!!!||||||||||||| rgIleLeuProPheAsnMetTrpValAsnLeuProLeuSerMetThrProTyrTyrGluI 17853 : GGATACTTCCATTTAATATGTGGGTCAACTTGCCATTATCAATGACGCCATATTACgaaa : 17912 181 : leValPheThrIleGln >>>> Target Intron 3 >>>> AlaLeuSerLeuTy : 190 ||...|||::::::||| 110 bp ..!||||||||||| leThrPheSerLeuGln++ ++ValLeuSerLeuTy 17913 : taactttttcattaCAGgt.........................aggtTCTGTCTCTGTA : 18052 191 : rHisValGlyIleGlyTyrPheCysPheAspAsnLeuLeuCysValPheAsnLeuGlnLe : 210 ||||:!!|||:!:.!!||||||||||||||||||...||||||::!.!.||||||!!. rHisIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisAl 18053 : CCATATTGGCGTGAGTTATTTCTgcttcgacaattttttatgcatCATGAACTTGCACGC : 18112 211 : uAlaGlyGlnPheGlnIleLeuGlnTyrLysMetAlaAsnIleAlaAspLeuIleGlu<- : 230 !||| !||||||!:!:!!|||||||||::!|||||||||!!:.!!||||||! !:: aAlaThrGlnPheArgValLeuGlnTyrArgMetAlaAsnMetThrAspLeuLysAspLy 18113 : GGCTACTCAGTTTCGAGTATTGCAATACCGAATGGCGAATATGACCGATTTAAAGGacaa : 18172 231 : ><-><-><->GluLysAsnGluLysGlyIleValSerSerProArgPheAlaLysLysCy : 246 |||:::||| ||| !! !||||||||| !! !!||||||! !:!!|| sGluArgLysGluArgAsnMetLysThrSerValSerSerAlaCysPheAlaThrGluCy 18173 : agagaggaaagagagaaatatgaAGACAAGTGTGAGTTCGGCGTGCTTTGCAACAGAATG : 18232 247 : sTyrAlaAlaPheLysAsnTyrValArgGluHisGlnAlaLeuIleAlaPheCysGluLy : 266 |||| !!.!.!!|||:!!|||:!!|||:!!|||||| !|||||||||!:!|||.!.|| sTyrAsnValLeuLysAspTyrIleArgGlnHisGlnAsnLeuIleAlaTyrCysAsnLy 18233 : TTACAACGTTCTCAAAGATTATATCAGACAGCATCAGAACCTGATTGCTTATTGCAACAA : 18292 267 : sLeuGluLysValPheSerLeuIleIleLeuTrpGlnValLeuMetPheSerLeuIleIl : 286 ||||||||||||||||!:!:!!|||:!!||| !!|||:!!||||||||||||:!!:!:|| sLeuGluLysValPheAsnIleIleValLeuGlyGlnLeuLeuMetPheSerMetLeuIl 18293 : ACTCGAGAAAGTGTTCAATATCATTGTTCTGGGGCAATTGTTAATGTTCAGCATGTTGAT : 18352 287 : eCysLeuAspGlyTyrGlnIleLeuLeu >>>> Target Intron 4 >>>> Pro : 296 |||||||||||||!:!|||||||||:!! 975 bp !! eCysLeuAspGlyPheGlnIleLeuMet++ ++Ala 18353 : CTGTCTCGATGGATTTCAGATACTTATGgt.........................agGCA : 19357 297 : GluSerProValArgArgArgLeuIlePheAlaPheHisLeuAlaAlaCysMetCysGln : 316 .!.!!!|||..!|||! !|||||||||||| !||||||:!!!.!||||||||||||||| AsnThrProThrArgThrArgLeuIlePheIlePheHisIleGlyAlaCysMetCysGln 19358 : AATACACCTACCAGAACCCGACTGATTTTCATCTTTCACATAGGAGCATGCATGTGTCAA : 19417 317 : LeuLeuMetPheThrTyrSerCysAspCysIleIleGlnGluSerSerSerIleAlaSer : 336 ||||||||||||||||||||||||||||||||||||::!||||||!!!|||! !|||..! LeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSerThrSerThrAlaGlu 19418 : TTGCTGATGTTTACCTACAGCTGCGACTGCATCATAAGAGAAAGCACGAGCACCGCCGAG : 19477 337 : AlaValTyrAspGlyProTrpProPheLeuPheGluThrThrSerGlyArgThrMetArg : 356 |||||||||..!||||||||| !!.!!||| !!:!.!!..!|||!:!! !!!:||| AlaValTyrSerGlyProTrpThrLeuLeuProMetSerAlaAspGlyLysMetIleArg 19478 : GCGGTGTACAGCGGTCCCTGGACACTTTTACCAATGAGCGCAGACGGAAAAATGATAAGG : 19537 357 : LysAspLeuThrLeuValIleLeuArgSerAlaValProCysCysLeuThrAlaArgGly : 376 |||||||||! !|||||||||:!!||||||::!||||||||||||||||||||||||||| LysAspLeuMetLeuValIleMetArgSerSerValProCysCysLeuThrAlaArgGly 19538 : AAAGATTTGATGCTCGTTATCATGAGATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGA : 19597 377 : PhePheValValSerLeuGluThrTyrThrArg >>>> Target Intron 5 >>>> : 388 |||||||||||||||||||||||||||||| !! 223 bp PhePheValValSerLeuGluThrTyrThrGly++ 19598 : TTCTTCGTCGTGTCTTTAGAAACGTACACAGGGgt......................... : 19635 389 : ValLeuSerThrAlaValSerTyrPheThrLeuLeuArgGln : 401 |||||||||||||||!.!||||||||||||||||||!:!||| ++ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuLysGln 19636 : agGTTTTAAGCACCGCAGCCTCATACTTTACGTTGCTGAAGCAA : 19897 vulgar: AfOr77 0 401 . KQ414828.1 15100 19897 + 1284 M 65 195 5 0 2 I 0 887 3 0 2 M 47 141 G 1 0 M 37 111 S 0 1 5 0 2 I 0 1382 3 0 2 S 1 2 M 34 102 5 0 2 I 0 106 3 0 2 M 44 132 G 0 12 M 66 198 5 0 2 I 0 971 3 0 2 M 92 276 5 0 2 I 0 219 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15101 19897 1284 + . gene_id 1 ; sequence AfOr77 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 15101 15295 . + . KQ414828.1 exonerate:protein2genome:local exon 15101 15295 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 15296 15297 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 15296 16186 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 16185 16186 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 16187 16439 . + . KQ414828.1 exonerate:protein2genome:local exon 16187 16439 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 16440 16441 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 16440 17825 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 17824 17825 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 17826 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17826 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 2 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18381 . + . insertions 12 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19897 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19897 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15101 19897 1284 + . alignment_id 1 ; Query AfOr77 ; Align 15101 1 195 ; Align 16187 66 141 ; Align 16328 114 111 ; Align 17828 152 102 ; Align 18040 186 132 ; Align 18184 230 198 ; Align 19357 296 276 ; Align 19856 388 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr77 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 784 Query range: 54 -> 402 Target range: 31937 -> 34304 55 : ThrAspPheTyrTyrSerPheGlyAspPheSerThrCysLeuPheAsnValCysAsnIle : 74 !:! ! !!.||| ||| ........!|||:!!!:!! !.!||||||! ! SerLysLeuTyrVal***PheLeuPheLeuGlnValCysMetTyrMetAlaCysAsnSer 31938 : AGCAAATTATACGtctaatttctatttcttcagGTTTGCATGTACATGGCATGCAACAGT : 31995 75 : MetTyrIleThrMetProLeuLeuLysIlePheIleIleValSerAsnLysLysAspPhe : 94 !!: !:!:..!:!! !:!!:!!|||||||||:!!:!!||| !...|||||| ! ||| IleAlaLeuValLeuAspIleIleLysIlePheValLeuValValArgLysLysLysPhe 31996 : ATAGCCCTGGTTTTGGATATAATCAAGATTTTCGTCCTAGTCGTACGGAAGAAAAAGTTT : 32055 95 : PheTyrLeuIlePheTyrThrGlnAsnAsnPheTyrLysAspAsnTyrAsnAsnLysArg : 114 .!! !|||||| |||! |||...||||||::: |||||| :!!:!! ! LeuGlyLeuIleGluTyrMetGlnLysAsnPhePheHisLeuAsnTyr---AspGlnAsp 32056 : CTCGGTCTGATTGAGTACATgcagaagaatttctttcatttgaaCTAC---GATCAGGAC : 32112 115 : GluGlnGlnIlePheThrAsnCysArgArgGlnCysThrIlePheValCysPheLeuThr : 134 |||.!....|||.!!.!!:!!...!:!||| !|||! ! !||||||||| !!!!!:!! GluAsnSerIleIleAlaHisAlaLysArgThrCysIleTyrPheValCysValPheSer 32113 : GAGAATTCTATTATCGCACACGCGAAACGAACGTGCATCTACTTCGTCTGCGTCTTTTCA : 32172 135 : PheSerThrLysGlyThrLeuValCysTyrIleIleSerProLeuVal{G} >>>> Ta : 151 |||!!!:!!:!!..!|||:!! !!! !|||||||||!!!|||!!!|||{.} PheCysSerGlnSerThrValPheSerTyrIleIleArgProPheVal{S}++ 32173 : TTTTGTTCTCAATCTACAGTTTTTTCCTATATAATAAGGCCATTTGTA{T}gt....... : 32226 152 : rget Intron 1 >>>> {lu}AsnIleGlyLysAsnGluSerGluArgValLeuPro : 163 170 bp {.!}|||:!!|||||||||||||||!!:|||! !! ! ! ++{er}AsnLeuGlyLysAsnGluSerAspArgGluHisIle 32227 : ..................ag{ca}AATCTTGGAAAGAATGAATCTGATAGAGAACATATA : 32429 164 : PheAsnMetTrpValAsnLeuProLeuSerThrSerProTyrTyrGluIleValPheThr : 183 !:!:!!||||||:!!:!!||||||||||||..!!!!|||||||||||||||...::!! ! TyrAspMetTrpLeuAspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIle 32430 : TACGATATGTGGCTCGATCTACCATTATCCGTAACAccatattatgaaattacttACATA : 32489 184 : IleGln >>>> Target Intron 2 >>>> AlaLeuSerLeuTyrHisValGlyI : 194 |||||| 307 bp |||||||||:!!|||!!.||||||: IleGln++ ++AlaLeuSerValTyrGlnValGlyV 32490 : ATACAGgt.........................agGCTTTATCTGTGTACCAAGTTGGAG : 32829 195 : leGlyTyrPheCysPheAspAsnLeuLeuCysValPheAsnLeuGlnLeuAlaGlyGlnP : 214 !: !!|||.!!||||||||||||:::... :::... !|||!!.:!!|||||||||| alCysTyrLeuCysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnP 32830 : TGTGTTACCTTTGCTttgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGT : 32889 215 : heGlnIleLeuGlnTyrLysMetAlaAsnIleAlaAspLeuIleGlu<->GluLysAsnG : 233 ||!::||||||||||||!:!!!:||||||:!::!!! !|||! !||| ! !|||!:!. heArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerA 32890 : TTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAGAGCA : 32949 234 : luLysGlyIleValSerSerProArgPheAlaLysLysCysTyrAlaAlaPheLysAsnT : 253 !. ! ..!! ! !!!!:!! ! !!:!:!!:!!||||||||| ! !|||||||||! snAspAsnThrSerThrAlaGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnC 32950 : ATGATAATACAAGCACGGCTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATT : 33009 254 : yrValArgGluHisGlnAlaLeuIleAlaPheCysGluLysLeuGluLysValPheSerL : 273 !:!!!:!:!!||||||||||||||| ||||||||| ||||||:!!||||||!!!: ysIleGlnGlnHisGlnAlaLeuIleGluPheCysGluIleLeuGluGluValPheThrV 33010 : GCATTCAACAACATCAGGCACTaattgaattttgtgaaatactCGAAGAGGTATTCACGG : 33069 274 : euIleIleLeuTrpGlnValLeuMetPheSerLeuIleIleCysLeuAspGlyTyrGlnI : 293 !!|||:!!||| ! ||||||||||||||||||:!!|||||||||!!!! !||||||:!!: alIleValLeuGlyGlnValLeuMetPheSerIleIleIleCysPheAlaGlyTyrGluV 33070 : TAATCGTACTCGGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAAG : 33129 294 : leLeuLeu >>>> Target Intron 3 >>>> ProGluSerProValArgArgAr : 303 !!|||||| 406 bp ! !! !||| !!..! !|| alLeuLeu++ ++IleThrLeuProPheGluSerAr 33130 : TACTCCTGgt.........................agATAACGTTACCATTTGAATCGCG : 33565 304 : gLeuIlePheAlaPheHisLeuAlaAlaCysMetCysGlnLeuLeuMetPheThrTyrSe : 323 |:!! !|||.!!! ! !||| !.!! !!:!! !!||||||! !|||||||||||||| gValAlaPheThrCysPheLeuIleThrGlyValSerGlnLeuTrpMetPheThrTyrSe 33566 : CGTTGCTTTCACGTGCTTCTTGATTACGGGCGTGAGTCAACTATGGATGTTCACGTACAG : 33625 324 : rCysAspCysIleIleGlnGluSerSerSerIleAlaSerAlaValTyrAspGlyProTr : 343 ||||:!!||||||! ! !|||||| !!:!||||||..!:!!||||||! !|||||||| rCysAsnCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTr 33626 : TTGCAATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATG : 33685 344 : pProPheLeuPheGluThrThrSerGlyArgThrMetArgLysAspLeuThrLeuValIl : 363 | ! !||| |||::: :!:|||||||||||| !:!!:!!|| pIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIl 33686 : GATAAATTTACCAATggataaatttggaaaactgCTAAGAAAGGATTTACAAGTGCTCAT : 33745 364 : eLeuArgSerAlaValProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGl : 383 |||||||:!! ! !|||! !..!||||||||| !!||||||||| !:!!!!!||||| eLeuArgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleThrLeuGl 33746 : CTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATAACTCTCGA : 33805 384 : uThrTyrThrArg >>>> Target Intron 4 >>>> ValLeuSerThrAlaVal : 393 ||||!:!|||!:! 440 bp :!!:!!||||||:!!:!! uThrPheThrLys++ ++IleMetSerThrSerMet 33806 : AACCTTTACTAAGgt.........................agATCATGAGTACATCAATG : 34275 394 : SerTyrPheThrLeuLeuArgGlnSer : 402 ||||||||||||||||||!:!|||||| SerTyrPheThrLeuLeuLysGlnSer 34276 : TCGTATTTCACCCTACTAAAACAAAGT : 34304 vulgar: AfOr77 54 402 . KQ414828.1 31937 34304 + 784 M 56 168 G 1 0 M 39 117 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 34 102 5 0 2 I 0 303 3 0 2 M 44 132 G 0 3 M 66 198 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31938 34304 784 + . gene_id 2 ; sequence AfOr77 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 31938 32223 . + . KQ414828.1 exonerate:protein2genome:local exon 31938 32223 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 32224 32225 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32224 32393 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32392 32393 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 32394 32497 . + . KQ414828.1 exonerate:protein2genome:local exon 32394 32497 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32498 32499 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32498 32804 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 32803 32804 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32805 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32805 33137 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 4 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34304 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34304 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31938 34304 784 + . alignment_id 2 ; Query AfOr77 ; Align 31938 55 168 ; Align 32106 112 117 ; Align 32396 152 102 ; Align 32805 186 132 ; Align 32940 230 198 ; Align 33544 296 276 ; Align 34260 388 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr77 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 722 Query range: 151 -> 401 Target range: 2882 -> 6459 152 : AsnIleGlyLysAsnGluSerGluArgValLeuProPheAsnMetTrpValAsnLeuProLe : 172 !::||||||||||||||||||!!:|||:!!||| ! !!|||.!.|||:!!:!!||||||:! SerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuProIl 2883 : AgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCCGAT : 2943 173 : uSerThrSerProTyrTyrGluIleValPheThrIleGln >>>> Target Intron 1 : 186 !!!!! !!!!|||||||||||||||:::|||||||||||| 406 bp eThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2944 : AACCATCACACCATactatgaaatattatttacgaTACAGgt.................... : 2987 187 : >>>> AlaLeuSerLeuTyrHisValGlyIleGlyTyrPheCysPheAspAsnLeuLeuC : 204 !!!!! !:!! :!!||| !!|||.!!|||.!!|||.!!||||||!!!|||| ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheLeuC 2988 : .....agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTCTGT : 3445 205 : ysValPheAsnLeuGlnLeuAlaGlyGlnPheGlnIleLeuGlnTyrLysMetAlaAsnIle : 224 ||:!!.!!||||||!!. !||| !||||||!:!||||||||||||!:!:!!:!!|||:!: ysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnVal 3446 : GCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAATGTG : 3505 225 : AlaAspLeuIleGluGluLysAsnGluLysGlyIleValSerSerProArgPheAlaLysLy : 245 ..!! ! !.!.|||:::!:::::||| ...:::||| ! !:!! ! :! CysGly---AlaAsnGluArgSerAspLysIleSerLysLysThrProSerAsnSerAspGl 3506 : TGCGGT---GCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTCGGACGA : 3565 246 : sCysTyrAlaAlaPheLysAsnTyrValArgGluHisGlnAlaLeuIleAlaPheCysGluL : 266 !||||||||| !|||||||||! !:!!!:!:!!|||||||||||||||! !!:!|||.!.| uCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnL 3566 : ATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACA : 3628 267 : ysLeuGluLysValPheSerLeuIleIleLeuTrpGlnValLeuMetPheSerLeuIleIle : 286 |||||:!!:!!||||||.!!:!!.!!:!:||| |||||||||:!:|||||||||:!!!!: ysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeuLeuMet 3629 : AACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATG : 3688 287 : CysLeuAspGlyTyrGlnIleLeuLeu >>>> Target Intron 2 >>>> ProGlu : 297 ||||||||||||||| :!::!!:!! 457 bp !!!: CysLeuAspGlyTyr---LeuValMet++ ++GluAsp 3689 : TGCCTCGATGGATAT---TTGGTGATGgt.........................agGAAGAT : 4175 298 : SerProValArgArgArgLeuIlePheAlaPheHisLeuAlaAlaCysMetCysGlnLeuLe : 318 !!!|||:!!! !!:!||||||! !||| !|||||||||.!!!.!|||:!!||||||||||| ThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLe 4176 : ACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTT : 4238 319 : uMetPheThrTyrSerCysAspCysIleIleGlnGluSerSerSerIleAlaSerAlaValT : 339 |||||||||||||||||||||||||:!:|||!:!||||||! !!:!:!:|||!:!|||:!!| uMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIleT 4239 : GATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATAT : 4301 340 : yrAspGlyProTrpProPheLeuPheGluThrThrSerGlyArgThrMetArgLysAspLeu : 359 ||||| !! !!||| ! !||| ! !! !|||||||||! !:!!|||||||||||| yrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAspLeu 4302 : ACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTG : 4361 360 : ThrLeuValIleLeuArgSerAlaValProCysCysLeuThrAlaArgGlyPhePheValVa : 380 |||!!!|||||| !|||||| !||||||||||||||||||||| !!||||||||| !|| ThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePheProVa 4362 : ACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGT : 4424 381 : lSerLeuGluThrTyrThrArg >>>> Target Intron 3 >>>> ValLeuSerTh : 391 ||||||||||||||||||| ! 1970 bp |||:!!||||| lSerLeuGluThrTyrThrSer++ ++ValIleSerTh 4425 : GTCACTGGAAACGTACACTTCGgt.........................agGTTATAAGTAC : 6427 392 : rAlaValSerTyrPheThrLeuLeuArgGln : 401 ||||||||||||||||||||||||||||||| rAlaValSerTyrPheThrLeuLeuArgGln 6428 : AGCAGTGTCGTACTTCACACTGTTAAGGCAA : 6459 vulgar: AfOr77 151 401 . KQ414828.1 2882 6459 + 722 M 34 102 5 0 2 I 0 402 3 0 2 M 41 123 G 1 0 M 64 192 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2883 6459 722 + . gene_id 3 ; sequence AfOr77 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2883 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2883 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 0 ; deletions 2 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6459 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6459 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2883 6459 722 + . alignment_id 3 ; Query AfOr77 ; Align 2883 152 102 ; Align 3391 186 123 ; Align 3514 228 192 ; Align 3706 293 9 ; Align 4172 296 276 ; Align 6418 388 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr77 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 469 Query range: 184 -> 388 Target range: 22722 -> 23829 185 : GlnAlaLeuSerLeuTyrHisValGlyIleGlyTyrPheCysPheAspAsnLeuLeuCys : 204 ||||||||||||:!!|||!!.|||.!! !!|||.!!||||||||| :::... GlnAlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIlePhePhe 22723 : CAGGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatttttttc : 22780 205 : ValPheAsnLeuGlnLeuAlaGlyGlnPheGlnIleLeuGlnTyrLysMetAlaAsnIle : 224 :::... |||!!.:!!||||||||||||!::||||||||||||!:!!!:||||||:!: IleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnVal 22781 : attttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTG : 22840 225 : AlaAspLeuIleGlu<->GluLysAsnGluLysGlyIleValSerSerProArgPheAla : 243 :!!! !|||! !||| ! !|||!:!...:!!..! ! !!!!..! ! !!:!:!! SerGlyLeuSerGluIleValLysSerSerGluAsnProSerThrAspGluLeuTyrSer 22841 : TCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAATTATACTCA : 22900 244 : LysLysCysTyrAlaAlaPheLysAsnTyrValArgGluHisGlnAlaLeuIleAlaPhe : 263 :!!||||||||| ! !|||||||||! !:!!!:!:!!|||||||||||||||! !||| GluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPhe 22901 : GAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAATTT : 22960 264 : CysGluLysLeuGluLysValPheSerLeuIleIleLeuTrpGlnValLeuMetPheSer : 283 |||! !! !||||||:!!||||||!!!:!!|||:!!||| ! ||||||||||||! !||| CysAlaThrLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMetSerSer 22961 : TGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCTAATGTCTAGC : 23020 284 : LeuIleIleCysLeuAspGlyTyrGlnIleLeuLeu >>>> Target Intron 1 > : 296 :!!:!!||||||!!! !|||||||||:!!|||||| 492 bp IleLeuIleCysPheIleGlyTyrGlnValLeuLeu++ 23021 : ATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGgt...................... : 23061 297 : >>> ProGluSerProValArgArgArgLeuIlePheAlaPheHisLeuAlaAlaCysM : 314 !:!!! ! !! !!..! !|||:!! !||||||! ! !||| ! ! !!| ++IleLysLeuSerPheGluSerArgValAlaPheAlaCysPheLeuMetMetGlyM 23062 : ...agATAAAGTTATCATTTGAATCGCGCGTTGCTTTCGCGTGCTTCTTGATGATGGGCA : 23605 315 : etCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleGlnGluSerSerSerI : 334 || !!||||||! !|||||||||||||||||||||||||||! ! !|||||| !!:!| etSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnI 23606 : TGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCATAACAACAGAAAGCCTGAACA : 23665 335 : leAlaSerAlaValTyrAspGlyProTrpProPheLeuPheGluThrThrSerGlyArgT : 354 |||||..!:!!||||||! !||||||||| ! !||| ! !! !! !|||!:! leAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysL 23666 : TCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATGGACAAATTTGGAAAAC : 23725 355 : hrMetArgLysAspLeuThrLeuValIleLeuArgSerAlaValProCysCysLeuThrA : 374 !:!:||||||!!:||| !:!!:!!|||||||||:!! ! !|||! !..!||||||| euLeuArgLysGluLeuGlnMetLeuIleLeuArgAlaArgArgProSerAlaLeuThrA 23726 : TGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACTG : 23785 375 : laArgGlyPhePheValValSerLeuGluThrTyrThrArgVal : 388 || !!||||||||| !:!!||||||||||||!:!|||!:!||| laCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 23786 : CCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 23829 vulgar: AfOr77 184 388 . KQ414828.1 22722 23829 + 469 M 45 135 G 0 3 M 66 198 5 0 2 I 0 488 3 0 2 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22723 23829 469 + . gene_id 4 ; sequence AfOr77 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22723 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22723 23058 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23059 23060 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23059 23550 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 23549 23550 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 23551 23829 . + . KQ414828.1 exonerate:protein2genome:local exon 23551 23829 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22723 23829 469 + . alignment_id 4 ; Query AfOr77 ; Align 22723 185 135 ; Align 22861 230 198 ; Align 23551 296 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr77 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 277 Query range: 187 -> 295 Target range: 10837 -> 11164 188 : SerLeuTyrHisValGlyIleGlyTyrPheCysPheAspAsnLeuLeuCysValPheAsn : 207 .!!|||||| !..!|||||| !!||||||||||||||||||:!!!!!|||:!!.!.!:! GlyLeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSer 10838 : GGACTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGC : 10895 208 : LeuGlnLeuAlaGlyGlnPheGlnIleLeuGlnTyrLysMetAlaAsnIleAlaAspLeu : 227 :!!!!.|||::!|||||||||!::||||||||||||!:!:!!.!!!!.:!::!!|||:!! ValHisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspVal 10896 : GTGCATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTA : 10955 228 : IleGluGluLysAsnGluLysGlyIleValSer<->SerProArgPheAlaLysLysCys : 246 ! ! :!!! !!::||||||...::: ||| ! ! ! !! !.!!:::!:!! ! GlnTyrGlnIleSerGluLysAsnMetGluSerValLeuGluAspCysThrArgArgSer 10956 : CAATATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGTAGATCT : 11015 247 : TyrAlaAlaPheLysAsnTyrValArgGluHisGlnAlaLeuIleAlaPheCysGluLys : 266 |||! ! !||||||!:!|||||||||:!!||||||.!!||||||! !!:!! !|||||| TyrGluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLys 11016 : TACGAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAG : 11075 267 : LeuGluLysValPheSerLeuIleIleLeuTrpGlnValLeuMetPheSerLeuIleIle : 286 |||||| ! |||!:!!!! !||||||||| !!|||||||||:!!||||||:!!:!!||| LeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIle 11076 : CTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATT : 11135 287 : CysLeuAspGlyTyrGlnIleLeuLeu : 295 |||||| !|||||||||||||||||| CysLeuPheGlyTyrGlnIleLeuLeu 11136 : TGCCTCTTTGGTTATCAGATATTATTG : 11164 vulgar: AfOr77 187 295 . KQ414828.1 10837 11164 + 277 M 51 153 G 0 3 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10838 11164 277 + . gene_id 5 ; sequence AfOr77 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 10838 11164 . + . KQ414828.1 exonerate:protein2genome:local exon 10838 11164 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10838 11164 277 + . alignment_id 5 ; Query AfOr77 ; Align 10838 188 153 ; Align 10994 239 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr77 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 267 Query range: 184 -> 295 Target range: 37865 -> 38201 185 : GlnAlaLeuSerLeuTyrHisValGlyIleGlyTyrPheCysPheAspAsnLeuLeuCys : 204 ||||||||||||:!!|||!!.|||.!! !!|||.!!||||||||| :::... GlnAlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIlePhePhe 37866 : CAGGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatttttttc : 37923 205 : ValPheAsnLeuGlnLeuAlaGlyGlnPheGlnIleLeuGlnTyrLysMetAlaAsnIle : 224 :::... |||!!.:!!||||||||||||!::||||||||||||!:!!!:||||||:!: IleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnVal 37924 : attttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTG : 37983 225 : AlaAspLeuIleGlu<->GluLysAsnGluLysGlyIleValSerSerProArgPheAla : 243 :!!! !|||! !||| ! !|||!:!...:!!..! ! !!!!..! ! !!:!:!! SerGlyLeuSerGluIleValLysSerSerGluAsnProSerThrAspGluLeuTyrSer 37984 : TCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAATTATACTCA : 38043 244 : LysLysCysTyrAlaAlaPheLysAsnTyrValArgGluHisGlnAlaLeuIleAlaPhe : 263 :!!||||||||| ! !|||||||||! !:!!!:!:!!|||||||||||||||! !||| GluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPhe 38044 : GAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAATTT : 38103 264 : CysGluLysLeuGluLysValPheSerLeuIleIleLeuTrpGlnValLeuMetPheSer : 283 |||! !! !||||||:!!||||||!!!:!!||| !||| ! |||||||||||||||||| CysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnValLeuMetPheSer 38104 : TGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCTAATGTTTAGC : 38163 284 : LeuIleIleCysLeuAspGlyTyrGlnIleLeuLeu : 295 :!!:!!||||||!!!! !! !|||||| !|||||| IleLeuIleCysPheValValTyrGlnAlaLeuLeu 38164 : ATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTG : 38201 vulgar: AfOr77 184 295 . KQ414828.1 37865 38201 + 267 M 45 135 G 0 3 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37866 38201 267 + . gene_id 6 ; sequence AfOr77 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37866 38201 . + . KQ414828.1 exonerate:protein2genome:local exon 37866 38201 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37866 38201 267 + . alignment_id 6 ; Query AfOr77 ; Align 37866 185 135 ; Align 38004 230 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr77 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 266 Query range: 296 -> 402 Target range: 12472 -> 13149 297 : GluSerProValArgArgArgLeuIlePheAlaPheHisLeuAlaAlaCysMetCysGln : 316 .!.!!! !!:!! !|||||| !|||||| !|||! !:!!..!!.!..!||| ! ! AsnThrSerLeuAlaArgArgSerIlePheMetPheLeuIleCysGlyAlaMetValLeu 12473 : AATACTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTTTTA : 12530 317 : LeuLeuMetPheThrTyrSerCysAspCysIleIleGlnGluSerSerSerIleAlaSer : 336 |||!!!||||||||||||||||||:!! :!:|||:!!:!!|||..!!:!||||||! ! LeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAlaPhe 12531 : TTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCTTTT : 12590 337 : AlaValTyrAspGlyProTrpProPheLeuPheGluThrThrSerGlyArgThrMetArg : 356 |||!.!|||...!.!! !||| !! !:!! !!.!! !!!!|||!:!! !:!:||| AlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeuArg 12591 : GCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTACGG : 12650 357 : LysAspLeuThrLeuValIleLeuArgSerAlaValProCysCysLeuThrAlaArgGly : 376 ! ||||||! !:!!|||||| !|||||| ! ! !|||||||||||||||!.!||| HisAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsnGly 12651 : CATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATGGA : 12710 377 : PhePheValValSerLeuGluThrTyrThrArg >>>> Target Intron 1 >>>> : 388 |||||| !|||||||||||||||||||||! ! 359 bp PhePheProValSerLeuGluThrTyrThrThr++ 12711 : TTTTTCCCTGTGTCCTTAGAAACTTATACTACGgt......................... : 12748 389 : ValLeuSerThrAlaValSerTyrPheThrLeuLeuArgGlnSer : 402 :::||||||||||||!.!|||||||||||||||||||||.!.!:! ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsn 12749 : agattttgAGTACCGCGGCGTCGTACTTCACATTATTGAGAAATAAC : 13149 vulgar: AfOr77 296 402 . KQ414828.1 12472 13149 + 266 M 91 273 5 0 2 I 0 355 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 12473 13149 266 + . gene_id 7 ; sequence AfOr77 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 12473 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12473 12745 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13104 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 13103 13104 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 13105 13149 . + . KQ414828.1 exonerate:protein2genome:local exon 13105 13149 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 12473 13149 266 + . alignment_id 7 ; Query AfOr77 ; Align 12473 297 273 ; Align 13105 388 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr77 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 242 Query range: 302 -> 401 Target range: 28526 -> 29233 303 : ArgLeuIlePheAlaPheHisLeuAlaAlaCysMetCysGlnLeuLeuMetPheThrTyr : 322 |||:!! !!!.|||! ! !! ! !.!! !!:!! !!||||||! !|||||||||||| ArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuTrpMetPheThrTyr 28527 : CGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTATGGATGTTCACGTAC : 28584 323 : SerCysAspCysIleIleGlnGluSerSerSerIleAlaSerAlaValTyrAspGlyPro : 342 |||||||||||||||! ! !|||||| !!:!||||||..!:!!||||||! !|||||| SerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyPro 28585 : AGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCA : 28644 343 : TrpProPheLeuPheGluThrThrSerGlyArgThrMetArgLysAspLeuThrLeuVal : 362 ||| ! !||| |||::: :!:|||||||||||| !:!!:!! TrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeu 28645 : TGGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTC : 28704 363 : IleLeuArgSerAlaValProCysCysLeuThrAlaArgGlyPhePheValValSerLeu : 382 |||||||||:!! ! !|||! !! !||||||||| !!||||||||| !:!!|||||| IleLeuArgAlaArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeu 28705 : ATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTC : 28764 383 : GluThrTyrThrArg >>>> Target Intron 1 >>>> ValLeuSerThrAlaV : 393 ||||||!:!|||!:! 410 bp :!!:!!||||||:!!: GluThrPheThrLys++ ++IleMetSerThrSerM 28765 : GAAACCTTTACTAAGgt.........................agATCATGAGTACATCAA : 29207 394 : alSerTyrPheThrLeuLeuArgGln : 401 !!||||||||||||||||||!:!||| etSerTyrPheThrLeuLeuLysGln 29208 : TGTCGTATTTCACATTATTAAAACAA : 29233 vulgar: AfOr77 302 401 . KQ414828.1 28526 29233 + 242 M 85 255 5 0 2 I 0 406 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28527 29233 242 + . gene_id 8 ; sequence AfOr77 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 28527 28781 . + . KQ414828.1 exonerate:protein2genome:local exon 28527 28781 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 28782 28783 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 28782 29191 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 29190 29191 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 29192 29233 . + . KQ414828.1 exonerate:protein2genome:local exon 29192 29233 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28527 29233 242 + . alignment_id 8 ; Query AfOr77 ; Align 28527 303 255 ; Align 29192 388 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr77 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 313 -> 388 Target range: 38535 -> 38760 314 : MetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleGlnGluSerSerSer : 333 :!! !!||||||! !|||||||||||||||||||||||||||! ! !|||||| !!:! ValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsn 38536 : GTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAAC : 38593 334 : IleAlaSerAlaValTyrAspGlyProTrpProPheLeuPheGluThrThrSerGlyArg : 353 ||||||..!:!!||||||! !||||||||| ! !||| |||::: IleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLys 38594 : ATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaa : 38653 354 : ThrMetArgLysAspLeuThrLeuValIleLeuArgSerAlaValProCysCysLeuThr : 373 :!:|||||||||||| !:!!:!!|||||||||:!! ! !|||! !! !|||||| LeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThr 38654 : ctgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACT : 38713 374 : AlaArgGlyPhePheValValSerLeuGluThrTyrThrArgVal : 388 ||| !!||||||||| !:!!||||||||||||!:!|||!:!||| AlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 38714 : GCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 38760 vulgar: AfOr77 313 388 . KQ414828.1 38535 38760 + 204 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38536 38760 204 + . gene_id 9 ; sequence AfOr77 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38536 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38536 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38536 38760 204 + . alignment_id 9 ; Query AfOr77 ; Align 38536 314 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr77 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 148 -> 190 Target range: 27339 -> 27465 149 : LeuValGluAsnIleGlyLysAsnGluSerGluArgValLeuProPheAsnMetTrpVal : 168 :::::: |||:!!|||||||||||||||!!:|||! !! ! !|||:!!|||||| !! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPhe 27340 : attttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTC : 27397 169 : AsnLeuProLeuSerThrSerProTyrTyrGluIleValPheThrIleGlnAlaLeuSer : 188 :!!||||||||||||..!!!!|||||||||||||||...::!! !||||||!.!||| !! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 27398 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 27457 189 : LeuTyr : 190 :!!!:! IlePhe 27458 : ATTTTC : 27465 vulgar: AfOr77 148 190 . KQ414828.1 27339 27465 + 127 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27340 27465 127 + . gene_id 10 ; sequence AfOr77 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27340 27465 . + . KQ414828.1 exonerate:protein2genome:local exon 27340 27465 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27340 27465 127 + . alignment_id 10 ; Query AfOr77 ; Align 27340 149 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr77 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 148 -> 190 Target range: 22307 -> 22433 149 : LeuValGluAsnIleGlyLysAsnGluSerGluArgValLeuProPheAsnMetTrpVal : 168 :::::: |||:!!|||||||||||||||!!:|||! !! ! !!:!:!!||||||:!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 22308 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 22365 169 : AsnLeuProLeuSerThrSerProTyrTyrGluIleValPheThrIleGlnAlaLeuSer : 188 :!!||||||||||||..!!!!|||||||||||||||...::!! !||||||!.!||| !! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 22366 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 22425 189 : LeuTyr : 190 :!!!:! IlePhe 22426 : ATTTTC : 22433 vulgar: AfOr77 148 190 . KQ414828.1 22307 22433 + 126 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22308 22433 126 + . gene_id 11 ; sequence AfOr77 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 22308 22433 . + . KQ414828.1 exonerate:protein2genome:local exon 22308 22433 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22308 22433 126 + . alignment_id 11 ; Query AfOr77 ; Align 22308 149 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr77 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 151 -> 190 Target range: 37459 -> 37576 152 : AsnIleGlyLysAsnGluSerGluArgValLeuProPheAsnMetTrpValAsnLeuPro : 171 |||:!!|||||||||||||||!!:|||! !! ! !!:!:!!||||||:!!:!!|||||| AsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuPro 37460 : AATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCA : 37517 172 : LeuSerThrSerProTyrTyrGluIleValPheThrIleGlnAlaLeuSerLeuTyr : 190 ||||||! !!!!|||||||||||||||...::!! !||||||!.!||| !!:!!!:! LeuSerIleThrProTyrTyrGluIleThrTyrIleIleGlnValLeuProIlePhe 37518 : TTATCCATAACAccatattatgaaattacttACATAATACAGGTATTACCAATTTTC : 37576 vulgar: AfOr77 151 190 . KQ414828.1 37459 37576 + 123 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37460 37576 123 + . gene_id 12 ; sequence AfOr77 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37460 37576 . + . KQ414828.1 exonerate:protein2genome:local exon 37460 37576 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37460 37576 123 + . alignment_id 12 ; Query AfOr77 ; Align 37460 152 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr77 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 154 -> 192 Target range: 9337 -> 9451 155 : LysAsnGluSerGluArgValLeuProPheAsnMetTrpValAsnLeuProLeuSerThrSe : 175 !..|||:!!|||||||||!.!!!!! !|||:!!||||||:!!||||||||||||!!!..!|| SerAsnLysSerGluArgAlaPheLeuPheAspMetTrpLeuAsnLeuProLeuThrValSe 9338 : AGCAACAAATCTGAAAGAGCGTTTCTGTTCGACATGTGGCTCAATTTACCTCTGACTGTTTC : 9398 176 : rProTyrTyrGluIleValPheThrIleGlnAlaLeuSerLeuTyrHisVal : 192 ||||||||||||| !:!!!!..!!:!!|||!.!!!! :::::: ::: rProTyrTyrGluGlyMetLeuAlaValGlnValPheProValPheThrIle 9399 : GCCTTACTACGAAGGAATGTTGGCTGTACAGGTATTTCcagttttcacaatt : 9451 vulgar: AfOr77 154 192 . KQ414828.1 9337 9451 + 103 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 9338 9451 103 + . gene_id 13 ; sequence AfOr77 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 9338 9451 . + . KQ414828.1 exonerate:protein2genome:local exon 9338 9451 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 9338 9451 103 + . alignment_id 13 ; Query AfOr77 ; Align 9338 155 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1066 Query range: 18 -> 427 Target range: 15103 -> 19909 19 : SerSerSerArgGlyLysAspPheAlaLeuLeuMetThrAlaPheLeuMetLysIleVal : 38 ||||||! !! ! ! ! |||.!.:!!:!! !:!!|||:!! !!!!!|||||||||||| SerSerPheThrThrAspAspIleSerIleSerLeuThrSerValPheMetLysIleVal 15104 : AGTAGTTTCACCACCGATGACATATCAATCAGCCTGACGTCCGTTTTCATGAAGATCGTT : 15161 39 : GlyLeuTrpLeuAlaGluSerLysGluGluGlnArgArgArgHisLeuThrLeuMetTyr : 58 |||||||||:!!|||..!!:!::: ||||||||| !|||:!!:!!|||||| ||| GlyLeuTrpMetAlaSerAsnArgPheGluGlnArgValArgAsnIleThrLeuCysTyr 15162 : GGACTGTGGATGGCGTCGAACCGTTTCGAGCAACGAGTACGAAATATCACGCTGTGTTAC : 15221 59 : ThrValValAlaIleLeuPheGlyValTrpValGlnPheArgAspPheTyrTyrSerTrp : 78 |||:!!:!!||||||||||||!.!:!!|||:!!|||.!.! !|||!!.|||||||||||| ThrLeuIleAlaIleLeuPheAlaLeuTrpIleGlnMetThrAspLeuTyrTyrSerTrp 15222 : ACGCTGATCGCGATTCTCTTCGCCCTGTGGATACAAATGACGGATTTGTATTACTCGTGG : 15281 79 : ProAsnPheGly >>>> Target Intron 1 >>>> AsnCysAlaTyrThrAlaC : 89 !:!!|||||| 891 bp !||| !|||||||||| GlyAspPheGly++ ++AlaCysLeuTyrThrAlaC 15282 : GGAGATTTTGGTgt.........................agGCCTGTTTATATACTGCAT : 16205 90 : ysAsnIleLeuCysLeuIleMetValLeuLeuLysLeuPheValLeuPheValHisArgL : 109 |||||||||||! |||! !!!: !!!!||||||:!!.!!||||||.!!!.!|||:::. ysAsnIleLeuSerLeuThrIleProPheLeuLysIleLeuValLeuLeuAlaHisLysA 16206 : GCAACATTTTATCGTTAACAATACCGTTTCTCAAGATACTCGTCTTGCTTGCAcacaaaa : 16265 110 : ysGluPheIleAspLeuLeuValTyrThrHisGluHisPheTrpHisThrAsnTyrThrT : 129 ..:::|||... |||::::!!:!! !!!...!.!.|||! !|||.!!:!!||| ! snAspPhePheHisLeuIleLeuHisLeuGlnArgGluPheLeuHisAlaAspTyrAspA 16266 : atgatttttttcatttgattcTGCACCTACAACGAGAATTCTTGCATGCAGATTACGACG : 16325 130 : yrAsnGluLeuLeuLeuValGluLysCysLysArgIleCysMetLeuCysIleThrLeuI : 149 !! !!||| ! !:!!:!! |||:!!||| !|||! !!!! !:!! !!!!. spTyrGluLysLysIleLeuLeuGlyCysGlnArgGlnCysThrPhePheValCysPheP 16326 : ACTACGAGAAAAAGATTTTGCTCGGTTGCCAACGTCAATGTACCTTCTTCGTTTGTTTCT : 16385 150 : leAsnValCysAlaGlnGlyThrIleValSerTyrValLeuThrProIleVal{G} >> : 167 !!!..:!!! !.!!:!!||||||:!!:!!||||||:!!:!!!.!|||:!!:!!{!} heThrLeuPheThrLysGlyThrValIleSerTyrIleValAsnProLeuIle{A}++ 16386 : TCACACTTTTCACTAAAGGAACTGTTATCTCGTACATCGTTAATCCGCTTATT{G}gt.. : 16442 168 : >> Target Intron 2 >>>> {lu}AsnIleGlyArgAsnHisSerAspArgValL : 178 1386 bp { !}|||||||||:::|||...|||!!:|||:!!| ++{la}AsnIleGlyLysAsnGluSerGluArgIleL 16443 : .......................ag{ca}aatattggaaaaaatgagTCAGAGAGGATAC : 17858 179 : euProPheAsnMetTrpValAspLeuProLysLeuSerValSerProTyrTyrGluIleL : 198 ||||||||||||||||||||:!!|||||| ||||||:!!!!!||||||||||||||| euProPheAsnMetTrpValAsnLeuPro---LeuSerMetThrProTyrTyrGluIleT 17859 : TTCCATTTAATATGTGGGTCAACTTGCCA---TTATCAATGACGCCATATTACgaaataa : 17915 199 : euPheValLeuGln >>>> Target Intron 3 >>>> ValLeuSerLeuTyrHi : 208 ||| |||||| 110 bp ||||||||||||||||| hrPheSerLeuGln++ ++ValLeuSerLeuTyrHi 17916 : ctttttcattaCAGgt.........................aggtTCTGTCTCTGTACCA : 18055 209 : sValGlyValCysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAl : 228 |:!!|||||| !!|||.!!||||||||||||...||||||::!||||||||||||||||| sIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisAlaAl 18056 : TATTGGCGTGAGTTATTTCTgcttcgacaattttttatgcatCATGAACTTGCACGCGGC : 18115 229 : aThrGlnPheArgIleLeuGlnHisArgLeuSerSerLeuGlySerSerGlyTrpAspTh : 248 |||||||||||||:!!||||||:!!|||:!!:!!!:!:!! !!!! !! ! aThrGlnPheArgValLeuGlnTyrArgMetAlaAsnMet------ThrAspLeuLysAs 18116 : TACTCAGTTTCGAGTATTGCAATACCGAATGGCGAATATG------ACCGATTTAAAGGa : 18169 249 : rGlyGlyArgAlaPheAspAsnArgAspThrSerArgTrpSerSerCysIle<->GluAs : 267 ||| ||| ! |||||| ! ! |||:!!|||.!! !.! pLysGluArgLysGluArgAsnMetLysThrSerValSerSerAlaCysPheAlaThrGl 18170 : caaagagaggaaagagagaaatatgaAGACAAGTGTGAGTTCGGCGTGCTTTGCAACAGA : 18229 268 : nCysTyrAlaThrPheLysLeuCysValLysGlnHisGlnAspArgIleThrTyrCysGl : 287 .|||||| !..!.!!||| !! !:!!!:!|||||||||:!!! !|||.!!||||||.! uCysTyrAsnValLeuLysAspTyrIleArgGlnHisGlnAsnLeuIleAlaTyrCysAs 18230 : ATGTTACAACGTTCTCAAAGATTATATCAGACAGCATCAGAACCTGATTGCTTATTGCAA : 18289 288 : nArgLeuAsnAspIlePheThrIleIleValLeuGlyHisIleLeuValPheSerLeuLe : 307 .!:!|||.!. ! :!:|||!.!|||||||||||||||!!.:!:|||:!!||||||:!!|| nLysLeuGluLysValPheAsnIleIleValLeuGlyGlnLeuLeuMetPheSerMetLe 18290 : CAAACTCGAGAAAGTGTTCAATATCATTGTTCTGGGGCAATTGTTAATGTTCAGCATGTT : 18349 308 : uMetCysLeuValGlyPheGlnValLeuMet >>>> Target Intron 4 >>>> : 318 |!!:||||||! !|||||||||:!!|||||| 975 bp uIleCysLeuAspGlyPheGlnIleLeuMet++ ++ 18350 : GATCTGTCTCGATGGATTTCAGATACTTATGgt.........................ag : 19355 319 : AlaAsnSerProProThrArgArgLeuIlePheValPheHisIleThrGlySerLeuCys : 337 ||||||!!!||| !!! !! !||||||||||||:!!||||||||| !!.!!!!:!!||| AlaAsnThrProThrArgThrArgLeuIlePheIlePheHisIleGlyAlaCysMetCys 19356 : GCAAATACACCTACCAGAACCCGACTGATTTTCATCTTTCACATAGGAGCATGCATGTGT : 19414 338 : GlnLeuLeuLeuPheThrTyrSerCysAspSerLeuIleGlnGluSerThrAsnValGly : 357 |||||||||:!!||||||||||||||||||!!!:!!|||::!|||||||||!:!..!!.! GlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSerThrSerThrAla 19415 : CAATTGCTGATGTTTACCTACAGCTGCGACTGCATCATAAGAGAAAGCACGAGCACCGCC : 19474 358 : SerAlaValTyrSerGlyProTrpIleCysLeuProMetAsnArgThrGlyArgThrLeu : 377 ..!|||||||||||||||||||||! ! !|||||||||!:! ! !|||!:!! !:!! GluAlaValTyrSerGlyProTrpThrLeuLeuProMetSerAlaAspGlyLysMetIle 19475 : GAGGCGGTGTACAGCGGTCCCTGGACACTTTTACCAATGAGCGCAGACGGAAAAATGATA : 19534 378 : ArgArgAspLeuLysMetValIleIleArgSerArgLysProCysCysLeuThrAlaSer : 397 |||!:!||||||! !:!:||||||!!:||||||!!! !||||||||||||||||||!!! ArgLysAspLeuMetLeuValIleMetArgSerSerValProCysCysLeuThrAlaArg 19535 : AGGAAAGATTTGATGCTCGTTATCATGAGATCGAGCGTACCTTGTTGCTTGACAGCCAGA : 19594 398 : ArgPhePheProValSerLeuGluThrCysThrThr >>>> Target Intron 5 > : 410 !!|||||| !|||||||||||||||! !||| ! 223 bp GlyPhePheValValSerLeuGluThrTyrThrGly++ 19595 : GGATTCTTCGTCGTGTCTTTAGAAACGTACACAGGGgt...................... : 19635 411 : >>> ValLeuSerThrAlaMetSerTyrPheThrLeuMetArgGlnSerPheAlaAsn : 427 ||||||||||||||| |||||||||||||||:!!!:!|||!!!! ! !||| ++ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuLysGlnArgSerGluAsn 19636 : ...agGTTTTAAGCACCGCAGCCTCATACTTTACGTTGCTGAAGCAAAGATCAGAGAAT : 19909 vulgar: AfOr87 18 427 . KQ414828.1 15103 19909 + 1066 M 64 192 5 0 2 I 0 887 3 0 2 M 84 252 S 0 1 5 0 2 I 0 1382 3 0 2 S 1 2 M 20 60 G 1 0 M 14 42 5 0 2 I 0 106 3 0 2 M 39 117 G 2 0 M 22 66 G 0 3 M 52 156 5 0 2 I 0 971 3 0 2 M 92 276 5 0 2 I 0 219 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15104 19909 1066 + . gene_id 1 ; sequence AfOr87 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 15104 15295 . + . KQ414828.1 exonerate:protein2genome:local exon 15104 15295 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 15296 15297 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 15296 16186 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 16185 16186 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 16187 16439 . + . KQ414828.1 exonerate:protein2genome:local exon 16187 16439 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 16440 16441 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 16440 17825 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 17824 17825 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 17826 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17826 17929 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 2 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18381 . + . insertions 3 ; deletions 2 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19909 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19909 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15104 19909 1066 + . alignment_id 1 ; Query AfOr87 ; Align 15104 19 192 ; Align 16187 83 252 ; Align 17828 168 60 ; Align 17888 189 42 ; Align 18040 203 117 ; Align 18157 244 66 ; Align 18226 266 156 ; Align 19357 318 276 ; Align 19856 410 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 771 Query range: 83 -> 424 Target range: 31973 -> 34304 84 : CysAlaTyrThrAlaCysAsnIleLeuCysLeuIleMetValLeuLeuLysLeuPheVal : 103 ||| !|||! !|||||||||! !:!!..!|||:!!:!!! !:!!:!!|||:!!|||||| CysMetTyrMetAlaCysAsnSerIleAlaLeuValLeuAspIleIleLysIlePheVal 31974 : TGCATGTACATGGCATGCAACAGTATAGCCCTGGTTTTGGATATAATCAAGATTTTCGTC : 32031 104 : LeuPheValHisArgLysGluPheIleAspLeuLeuValTyrThrHisGluHisPheTrp : 123 ||| !!|||!..!:!|||:!!|||:!!! !|||:!!! !|||! ...::::::|||::: LeuValValArgLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPhePhe 32032 : CTAGTCGTACGGAAGAAAAAGTTTCTCGGTCTGATTGAGTACATgcagaagaatttcttt : 32091 124 : HisThrAsnTyrThrTyrAsnGluLeuLeuLeuValGluLysCysLysArgIleCysMet : 143 ||| |||||| ! ! :!!||| !! !:!!:!!! ! ! ...||||||! |||!!: HisLeuAsnTyrAspGlnAspGluAsnSerIleIleAlaHisAlaLysArgThrCysIle 32092 : catttgaaCTACGATCAGGACGAGAATTCTATTATCGCACACGCGAAACGAACGTGCATC : 32151 144 : LeuCysIleThrLeuIleAsnValCysAlaGlnGlyThrIleValSerTyrValLeuThr : 163 ! !! !:!! !:!!.!!::: !!|||:!!|||..!|||:!! !!||||||:!!:!!! ! TyrPheValCysValPheSerPheCysSerGlnSerThrValPheSerTyrIleIleArg 32152 : TACTTCGTCTGCGTCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTATATAATAAGG : 32211 164 : ProIleVal{G} >>>> Target Intron 1 >>>> {lu}AsnIleGlyArgAsn : 172 |||.!!|||{.} 170 bp {.!}|||:!!|||!:!||| ProPheVal{S}++ ++{er}AsnLeuGlyLysAsn 32212 : CCATTTGTA{T}gt.........................ag{ca}AATCTTGGAAAGAAT : 32408 173 : HisSerAspArgValLeuProPheAsnMetTrpValAspLeuProLysLeuSerValSer : 192 .!.|||||||||! !! ! !!:!:!!||||||:!!||||||||| |||||||||!!! GluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuPro---LeuSerValThr 32409 : GAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCA---TTATCCGTAACA : 32465 193 : ProTyrTyrGluIleLeuPheValLeuGln >>>> Target Intron 2 >>>> V : 203 ||||||||||||||| ::!:!!:!!||| 307 bp ! ProTyrTyrGluIleThrTyrIleIleGln++ ++A 32466 : ccatattatgaaattacttACATAATACAGgt.........................agG : 32805 204 : alLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLeuCysLeuM : 223 .!||||||:!!|||!!.|||||||||||||||:!!||||||||||||:::... :::| laLeuSerValTyrGlnValGlyValCysTyrLeuCysPheAspAsnIlePhePheIleM 32806 : CTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCTttgataacatttttttcatta : 32865 224 : etAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnHisArgLeuSerSerLeuGlyS : 243 || !||||||!.!||| !||||||||||||||||||:!!|||:!!:!!!:!:!! etCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnVal---- 32866 : tgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTG---- : 32922 244 : erSerGlyTrpAspThrGlyGlyArgAlaPheAspAsnArgAspThrSerArgTrpSerS : 263 |||||| ..! ! !! !!:!::! !||||||! !..!|||:!!..!! ! !| --SerGlyLeuSerGluIleValLysSerAsnAspAsnThrSerThrAlaGluLeuTyrS 32923 : --TCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACAAGCACGGCTGAATTATACT : 32979 264 : erCysIleGluAsnCysTyrAlaThrPheLysLeuCysValLysGlnHisGlnAspArgI : 283 || |||!!.|||||| !! !|||||| !|||:!!:!!|||||||||! ! | er------GluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuI 32980 : CA------GAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTaa : 33033 284 : leThrTyrCysGlnArgLeuAsnAspIlePheThrIleIleValLeuGlyHisIleLeuV : 303 || :::|||::: |||.!.!!::!!||||||:!!||||||||||||!!.:!!|||: leGluPheCysGluIleLeuGluGluValPheThrValIleValLeuGlyGlnValLeuM 33034 : ttgaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTAA : 33093 304 : alPheSerLeuLeuMetCysLeuValGlyPheGlnValLeuMet >>>> Target In : 318 !!||||||:!!:!!!!:|||!!!!.!|||!:!:!!||||||:!! 406 etPheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeu++ 33094 : TGTTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGgt.............. : 33140 319 : tron 3 >>>> AlaAsnSerProProThrArgArgLeuIlePheValPheHisIleTh : 333 bp !!..! !||| ! ! !|||:!! !|||..!! ! !:!:! ++IleThrLeuProPheGluSerArgValAlaPheThrCysPheLeuIl 33141 : ...........agATAACGTTACCATTTGAATCGCGCGTTGCTTTCACGTGCTTCTTGAT : 33589 334 : rGlySerLeuCysGlnLeuLeuLeuPheThrTyrSerCysAspSerLeuIleGlnGluSe : 353 ! !.!!:!! !!||||||! !:!!|||||||||||||||:!!!!!:!!! ! !||||| eThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAsnCysIleThrThrGluSe 33590 : TACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCAATTGCATAACAACAGAAAG : 33649 354 : rThrAsnValGlySerAlaValTyrSerGlyProTrpIleCysLeuProMetAsnArgTh : 373 | !|||:!!!.!..!:!!||||||:!!|||||||||||| !|||||||||:::::: rLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPh 33650 : CCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATggataaatt : 33709 374 : rGlyArgThrLeuArgArgAspLeuLysMetValIleIleArgSerArgLysProCysCy : 393 |||::: ||||||!:!||||||:!!:!!:!!|||:!:|||:!!|||::!|||! !.. eGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerAl 33710 : tggaaaactgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCGC : 33769 394 : sLeuThrAlaSerArgPhePheProValSerLeuGluThrCysThrThr >>>> Targ : 410 !|||||||||!!! !!|||||| !!:!!!!!|||||||||! !|||! ! aLeuThrAlaCysGlyPhePheSerIleThrLeuGluThrPheThrLys++ 33770 : TTTGACTGCCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTACTAAGgt......... : 33822 411 : et Intron 4 >>>> ValLeuSerThrAlaMetSerTyrPheThrLeuMetArgGln : 423 440 bp :!!:!!||||||:!!||||||||||||||||||:!:!:!||| ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGln 33823 : ................agATCATGAGTACATCAATGTCGTATTTCACCCTACTAAAACAA : 34299 424 : Ser : 424 ||| Ser 34300 : AGT : 34304 vulgar: AfOr87 83 424 . KQ414828.1 31973 34304 + 771 M 83 249 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 20 60 G 1 0 M 14 42 5 0 2 I 0 303 3 0 2 M 39 117 G 2 0 M 20 60 G 2 0 M 52 156 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31974 34304 771 + . gene_id 2 ; sequence AfOr87 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 31974 32223 . + . KQ414828.1 exonerate:protein2genome:local exon 31974 32223 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32224 32225 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32224 32393 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32392 32393 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 32394 32497 . + . KQ414828.1 exonerate:protein2genome:local exon 32394 32497 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 32498 32499 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32498 32804 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 32803 32804 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32805 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32805 33137 . + . insertions 0 ; deletions 4 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 4 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34304 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34304 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31974 34304 771 + . alignment_id 2 ; Query AfOr87 ; Align 31974 84 249 ; Align 32396 168 60 ; Align 32456 189 42 ; Align 32805 203 117 ; Align 32922 244 60 ; Align 32982 266 156 ; Align 33544 318 276 ; Align 34260 410 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 548 Query range: 167 -> 423 Target range: 2882 -> 6459 168 : AsnIleGlyArgAsnHisSerAspArgValLeuProPheAsnMetTrpValAspLeuProLy : 188 !::||||||:::|||...|||||||||:!!||| ! !!|||.!.|||:!!||||||||| SerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuPro-- 2883 : AgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCCG-- : 2943 189 : sLeuSerValSerProTyrTyrGluIleLeuPheValLeuGlnValLeuSerLeuTyrHis : 209 :!!!!!:!!!!!|||||||||||||||||||||...:!!|||||| :::::: -IleThrIleThrProTyrTyrGluIleLeuPheThrIleGlnValThr***IlePheSer- 2944 : -ATAACCATCACACCATactatgaaatattatttacgaTACAGgtaacgtgaattttttctt : 3003 210 : >>>> Target Intron 1 >>>> ValGlyValCysTyrIleCysPheAspAsnLeuL : 220 388 bp :!! !:!! ! !! ! !:!! !| + ++IlePheIleIleMetTyrValCysIleSerTyrL 3004 : t.........................agATTTTTATCATAATGTACGTTTGCATAAGCTACC : 3424 221 : euCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnHisArgLeuSerSer : 240 |||||:!! |||!!!! ..! !! !.!..!.!.!! ! ! !!. !! !! !! ! euCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeu 3425 : TTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTG : 3484 241 : LeuGlySerSerGlyTrpAspThrGlyGlyArgAlaPheAspAsnArgAspThrSerArgTr : 261 ! ! !!!! !..! ! !|||!.!!.!! ! !...:::::: :::...::: GlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAspLysIleSerLysLysTh 3485 : CAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaaac : 3547 262 : pSerSerCysIleGluAsnCysTyrAlaThrPheLysLeuCysValLysGlnHisGlnAspA : 282 !!||| ! !!:.!.|||||||||! !|||||| !|||:!!:!!|||||||||! ! rProSerAsnSerAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaL 3548 : aCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCAC : 3610 283 : rgIleThrTyrCysGlnArgLeuAsnAspIlePheThrIleIleValLeuGlyHisIleLeu : 302 !||| !||||||.!.!:!|||.!.!!::!:||| !|||.!!||||||!.!!!.:!:||| euIleGluTyrCysAsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeu 3611 : TCATAGAATACTGTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTG : 3670 303 : ValPheSerLeuLeuMetCysLeuValGlyPheGlnValLeuMet >>>> Target Int : 318 :!!|||||||||||||||||||||! !|||!:! :!!:!!||| 457 b LeuPheSerLeuLeuMetCysLeuAspGlyTyr---LeuValMet++ 3671 : CTCTTCAGTTTGTTAATGTGCCTCGATGGATAT---TTGGTGATGgt............... : 3717 319 : ron 2 >>>> AlaAsnSerProProThrArgArgLeuIlePheValPheHisIleThrGl : 334 p ! !:!!!!!||| !! !!:!||||||! !|||:!!||||||:!!||||| ++GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGl 3718 : ..........agGAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGG : 4220 335 : ySerLeuCysGlnLeuLeuLeuPheThrTyrSerCysAspSerLeuIleGlnGluSerThrA : 355 |!!!|||||||||||||||:!!||||||||||||||||||!!!||||||!:!|||||| !| yCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuA 4221 : ATGCCTGTGCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGA : 4283 356 : snValGlySerAlaValTyrSerGlyProTrpIleCysLeuProMetAsnArgThrGlyArg : 375 |||||!.!!:!|||:!!|||..! !! !!|||||| !|||||||||:!!|||:!!|||||| snValAlaAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArg 4284 : ACGTGGCCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGA : 4343 376 : ThrLeuArgArgAspLeuLysMetValIleIleArgSerArgLysProCysCysLeuThrAl : 396 ! !||||||!:!||||||! !.!.|||||| !||||||||| !||||||||||||||||| MetLeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAl 4344 : ATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGC : 4406 397 : aSerArgPhePheProValSerLeuGluThrCysThrThr >>>> Target Intron 3 : 410 |!!! !!||||||||||||||||||||||||! !|||:!! 1970 bp aCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 4407 : TTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt.................... : 4450 411 : >>>> ValLeuSerThrAlaMetSerTyrPheThrLeuMetArgGln : 423 |||:!!|||||||||:!!|||||||||||||||:!:|||||| ++ValIleSerThrAlaValSerTyrPheThrLeuLeuArgGln 4451 : .....agGTTATAAGTACAGCAGTGTCGTACTTCACACTGTTAAGGCAA : 6459 vulgar: AfOr87 167 423 . KQ414828.1 2882 6459 + 548 M 20 60 G 1 0 M 20 60 5 0 2 I 0 384 3 0 2 M 105 315 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2883 6459 548 + . gene_id 3 ; sequence AfOr87 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2883 3002 . + . KQ414828.1 exonerate:protein2genome:local exon 2883 3002 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 3003 3004 . + . intron_id 1 ; splice_site "tt" KQ414828.1 exonerate:protein2genome:local intron 3003 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6459 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6459 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2883 6459 548 + . alignment_id 3 ; Query AfOr87 ; Align 2883 168 60 ; Align 2943 189 60 ; Align 3391 209 315 ; Align 3706 315 9 ; Align 4172 318 276 ; Align 6418 410 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 483 Query range: 202 -> 424 Target range: 10831 -> 13149 203 : ValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLeuCysLeu : 222 :!!! !.!!|||||| !..!|||:!!||||||.!!||||||||||||:!!!!!|||:!! IleSerGlyLeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIle 10832 : ATTTCAGGACTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATC : 10889 223 : MetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnHisArgLeuSerSerLeuGly : 242 |||!:!:!!||| !::! !||||||||||||||||||:!!||||||!!!!.!|||..! MetSerValHisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSer 10890 : ATGAGCGTGCATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCC : 10949 243 : SerSerGlyTrpAspThrGlyGlyArgAlaPheAspAsnArgAspThrSerArgTrpSer : 262 |||..! ! !!:! ! :::...... ||| !! !..! ------------AspValGlnTyrGlnIleSerGluLysAsnMetGluSerValLeuGlu 10950 : ------------GACGTACAATATCAGATAAgcgagaaaaatatggaatcTGTATTGGAA : 10997 263 : SerCysIleGluAsnCysTyrAlaThrPheLysLeuCysValLysGlnHisGlnAspArg : 282 ..!|||! !...!..! !|||! !! !|||||| !! !|||::!||||||||| ! AspCysThrArgArgSerTyrGluLysPheLysSerTyrValArgGlnHisGlnThrLeu 10998 : GACTGTACACGTAGATCTTACGAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTG : 11057 283 : IleThrTyrCysGlnArgLeuAsnAspIlePheThrIleIleValLeuGlyHisIleLeu : 302 ||| !|||! !:!!!:!|||.!. !!:!!!:!|||! !|||:!!||||||!!.:!:||| IleAspTyrTyrGluLysLeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeu 11058 : ATCGATTATTACGAGAAGCTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTA : 11117 303 : ValPheSerLeuLeuMetCysLeuValGlyPheGlnValLeuMet >>>> Target I : 318 :!!||||||:!!|||!!:|||||| !!|||!:!|||:!!|||:!! 1305 LeuPheSerValLeuIleCysLeuPheGlyTyrGlnIleLeuLeu++ 11118 : CTGTTCAGTGTGTTAATTTGCCTCTTTGGTTATCAGATATTATTGgt............. : 11167 319 : ntron 1 >>>> AlaAsnSerProProThrArgArgLeuIlePheValPheHisIleT : 333 bp ||||||!!! !!! !.!!|||||| !||||||:!!|||! !||| ++AlaAsnThrSerLeuAlaArgArgSerIlePheMetPheLeuIleC 11168 : ............agGCTAATACTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATAT : 12515 334 : hrGlySerLeuCysGlnLeuLeuLeuPheThrTyrSerCysAspSerLeuIleGlnGluS : 353 !|||:!!:!! ! !|||!!!:!!|||||||||||||||:!!! !:!!|||:!!:!!| ysGlyAlaMetValLeuLeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnS 12516 : GTGGCGCCATGGTTTTATTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAA : 12575 354 : erThrAsnValGlySerAlaValTyrSerGlyProTrpIleCysLeuProMetAsnArgT : 373 || !|||:!!!.!! !|||!.!||||||!.!! !|||! !!:!!|||||||||!:!| erAspAsnIleAlaPheAlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysT 12576 : GCGATAATATTGCTTTTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAA : 12635 374 : hrGlyArgThrLeuArgArgAspLeuLysMetValIleIleArgSerArgLysProCysC : 393 |||||!:!! !||||||!.!||||||! !||||||||| |||||||||::! !|||| hrGlyLysLysLeuArgHisAspLeuIleMetValIleGlyArgSerArgArgValCysC 12636 : CTGGCAAAAAGCTACGGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTT : 12695 394 : ysLeuThrAlaSerArgPhePheProValSerLeuGluThrCysThr--{T} >>>> T : 409 |||||||||||!:! !!||||||||||||||||||||||||! !|||##{ } ysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThr##{G}++ 12696 : GTCTGACTGCGAATGGATTTTTCCCTGTGTCCTTAGAAACTTATACTAC{G}gt...... : 12748 410 : arget Intron 2 >>>> {hr}ValLeuSerThrAlaMetSerTyrPheThrLeuMe : 421 357 bp { !}:::|||||||||||| !|||||||||||||||:! +-{lu}IleLeuSerThrAlaAlaSerTyrPheThrLeuLe 12749 : ...................ac{ag}attttgAGTACCGCGGCGTCGTACTTCACATTATT : 13138 422 : tArgGlnSer : 424 !|||.!.!:! uArgAsnAsn 13139 : GAGAAATAAC : 13149 vulgar: AfOr87 202 424 . KQ414828.1 10831 13149 + 483 M 40 120 G 4 0 M 71 213 5 0 2 I 0 1301 3 0 2 M 91 273 F 0 2 S 0 1 5 0 2 I 0 353 3 0 2 S 1 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10832 13149 483 + . gene_id 4 ; sequence AfOr87 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 10832 11164 . + . KQ414828.1 exonerate:protein2genome:local exon 10832 11164 . + . insertions 0 ; deletions 4 KQ414828.1 exonerate:protein2genome:local splice5 11165 11166 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 11165 12469 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12468 12469 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 12470 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12745 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13102 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13101 13102 . + . intron_id 1 ; splice_site "ac" KQ414828.1 exonerate:protein2genome:local cds 13103 13149 . + . KQ414828.1 exonerate:protein2genome:local exon 13103 13149 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10832 13149 483 + . alignment_id 4 ; Query AfOr87 ; Align 10832 203 120 ; Align 10952 247 213 ; Align 12470 318 273 ; Align 13105 410 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 275 Query range: 164 -> 319 Target range: 22307 -> 23064 165 : IleValGluAsnIleGlyArgAsnHisSerAspArgValLeuProPheAsnMetTrpVal : 184 |||::: |||:!!|||!:!|||.!.|||||||||! !! ! !!:!:!!||||||:!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 22308 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 22365 185 : AspLeuProLysLeuSerValSerProTyrTyrGluIleLeuPhe >>>> Target I : 200 ||||||||| |||||||||!!!||||||||||||||| ::! 316 AspLeuPro---LeuSerValThrProTyrTyrGluIleThrTyr-+ 22366 : GATCTACCA---TTATCCGTAACAccatattatgaaattacttACat............. : 22412 201 : ntron 1 >>>> ValLeuGlnValLeuSerLeuTyrHisValGlyValCysTyrIleC : 215 bp !.!|||...||| |||!!.|||.!!!.!||||||:!!| ++AlaLeuSerVal---------TyrGlnValSerAlaCysTyrLeuC 22413 : ............agGCTTTATCTGTG---------TACCAAGTTAGCGCGTGTTACCTTT : 22762 216 : ysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuG : 235 |||||||| :::... :::::: ||||||!.!||| !|||||||||||||||| ysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuG 22763 : GCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTAC : 22822 236 : lnHisArgLeuSerSerLeuGlySerSerGlyTrpAspThrGlyGlyArgAlaPheAspA : 255 ||:!!|||:!!:!!!:!:!! |||||| ..! ! !! !!:!::! !!!:| lnTyrArgIleAlaAsnVal------SerGlyLeuSerGluIleValLysSerSerGluA 22823 : AATACAGAATTGCCAATGTG------TCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAA : 22876 256 : snArgAspThrSerArgTrpSerSerCysIleGluAsnCysTyrAlaThrPheLysLeuC : 275 ||! !..!|||..!..!! ! !||| |||!!.|||||| !! !|||||| !| snProSerThrAspGluLeuTyrSer------GluLysCysTyrIleLysPheLysAsnC 22877 : ATCCAAGCACAGATGAATTATACTCA------GAGAAATGTTACATCAAGTTTAAGAATT : 22930 276 : ysValLysGlnHisGlnAspArgIleThrTyrCysGlnArgLeuAsnAspIlePheThrI : 295 ||:!!:!!|||||||||! ! !||| !!:!||| !! !|||.!.!!::!!||||||: ysIleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrV 22931 : GCATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGG : 22990 296 : leIleValLeuGlyHisIleLeuValPheSerLeuLeuMetCysLeuValGlyPheGlnV : 315 !!||||||||||||!!.:!!|||:!!! !|||:!!|||!!:|||!!!:!!|||!:!|||| alIleValLeuGlyGlnValLeuMetSerSerIleLeuIleCysPheIleGlyTyrGlnV 22991 : TAATCGTACTCGGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAG : 23050 316 : alLeuMetAlaAsn : 319 |||||:!!!.!!:! alLeuLeuValSer 23051 : TACTCCTGGTGAGT : 23064 vulgar: AfOr87 164 319 . KQ414828.1 22307 23064 + 275 M 23 69 G 1 0 M 11 33 5 0 2 I 0 312 3 0 2 M 4 12 G 3 0 M 35 105 G 2 0 M 20 60 G 2 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22308 23064 275 + . gene_id 5 ; sequence AfOr87 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22308 22409 . + . KQ414828.1 exonerate:protein2genome:local exon 22308 22409 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 22410 22411 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 22410 22725 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 23064 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 23064 . + . insertions 0 ; deletions 7 KQ414828.1 exonerate:protein2genome:local similarity 22308 23064 275 + . alignment_id 5 ; Query AfOr87 ; Align 22308 165 69 ; Align 22377 189 33 ; Align 22726 200 12 ; Align 22738 207 105 ; Align 22843 244 60 ; Align 22903 266 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 261 Query range: 164 -> 319 Target range: 37450 -> 38207 165 : IleValGluAsnIleGlyArgAsnHisSerAspArgValLeuProPheAsnMetTrpVal : 184 ||| |||:!!|||!:!|||.!.|||||||||! !! ! !!:!:!!||||||:!! IleSerAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 37451 : atttcagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 37508 185 : AspLeuPro >>>> Target Intron 1 >>>> LysLeuSerValSerProTyrT : 195 ||||||||| 304 bp ||| ..!:!!! !||| AspLeuPro-+ ++LysSerGlnMetIleProGlyA 37509 : GATCTACCAtt.........................agaaatcaCAAATGATTCCAGgta : 37845 196 : yrGluIleLeuPheValLeuGlnValLeuSerLeuTyrHisValGlyValCysTyrIleC : 215 ::: ::: ::! !|||!.!||||||:!!|||!!.|||.!!!.!||||||:!!| snLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValSerAlaCysTyrLeuC 37846 : ataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTT : 37905 216 : ysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuG : 235 |||||||| :::... :::::: ||||||!.!||| !|||||||||||||||| ysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuG 37906 : GCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTAC : 37965 236 : lnHisArgLeuSerSerLeuGlySerSerGlyTrpAspThrGlyGlyArgAlaPheAspA : 255 ||:!!|||:!!:!!!:!:!! |||||| ..! ! !! !!:!::! !!!:| lnTyrArgIleAlaAsnVal------SerGlyLeuSerGluIleValLysSerSerGluA 37966 : AATACAGAATTGCCAATGTG------TCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAA : 38019 256 : snArgAspThrSerArgTrpSerSerCysIleGluAsnCysTyrAlaThrPheLysLeuC : 275 ||! !..!|||..!..!! ! !||| |||!!.|||||| !! !|||||| !| snProSerThrAspGluLeuTyrSer------GluLysCysTyrIleLysPheLysAsnC 38020 : ATCCAAGCACAGATGAATTATACTCA------GAGAAATGTTACATCAAGTTTAAGAATT : 38073 276 : ysValLysGlnHisGlnAspArgIleThrTyrCysGlnArgLeuAsnAspIlePheThrI : 295 ||:!!:!!|||||||||! ! !||| !!:!||| !! !|||.!.!!::!!||||||: ysIleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrV 38074 : GCATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGG : 38133 296 : leIleValLeuGlyHisIleLeuValPheSerLeuLeuMetCysLeuValGlyPheGlnV : 315 !!|||!.!||||||!!.:!!|||:!!||||||:!!|||!!:|||!!!|||! !!:!|||! alIleAlaLeuGlyGlnValLeuMetPheSerIleLeuIleCysPheValValTyrGlnA 38134 : TAATTGCACTCGGACAAGTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAG : 38193 316 : alLeuMetAlaAsn : 319 .!|||:!!!.!!:! laLeuLeuValSer 38194 : CACTCCTGGTGAGT : 38207 vulgar: AfOr87 164 319 . KQ414828.1 37450 38207 + 261 M 23 69 5 0 2 I 0 300 3 0 2 M 54 162 G 2 0 M 20 60 G 2 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37451 38207 261 + . gene_id 6 ; sequence AfOr87 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37451 37519 . + . KQ414828.1 exonerate:protein2genome:local exon 37451 37519 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37520 37521 . + . intron_id 1 ; splice_site "TT" KQ414828.1 exonerate:protein2genome:local intron 37520 37823 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37822 37823 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 37824 38207 . + . KQ414828.1 exonerate:protein2genome:local exon 37824 38207 . + . insertions 0 ; deletions 4 KQ414828.1 exonerate:protein2genome:local similarity 37451 38207 261 + . alignment_id 6 ; Query AfOr87 ; Align 37451 165 69 ; Align 37824 188 162 ; Align 37986 244 60 ; Align 38046 266 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 260 Query range: 334 -> 423 Target range: 28556 -> 29233 335 : SerLeuCysGlnLeuLeuLeuPheThrTyrSerCysAspSerLeuIleGlnGluSerThr : 354 .!!:!! !!||||||! !:!!||||||||||||||||||!!!:!!! ! !|||||| ! GlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeu 28557 : GGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTG : 28614 355 : AsnValGlySerAlaValTyrSerGlyProTrpIleCysLeuProMetAsnArgThrGly : 374 |||:!!!.!..!:!!||||||:!!|||||||||||| !|||||||||:::::: ||| AsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGly 28615 : AACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttgga : 28674 375 : ArgThrLeuArgArgAspLeuLysMetValIleIleArgSerArgLysProCysCysLeu : 394 ::: ||||||!:!||||||:!!:!!:!!|||:!:|||:!!|||::!|||! !! !||| LysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeu 28675 : aaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTG : 28734 395 : ThrAlaSerArgPhePheProValSerLeuGluThrCysThrThr >>>> Target I : 410 ||||||!!! !!|||||| !!:!!||||||||||||! !|||! ! 410 ThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 28735 : ACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt............. : 28784 411 : ntron 1 >>>> ValLeuSerThrAlaMetSerTyrPheThrLeuMetArgGln : 423 bp :!!:!!||||||:!!||||||||||||||||||:!:!:!||| ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGln 28785 : ............agATCATGAGTACATCAATGTCGTATTTCACATTATTAAAACAA : 29233 vulgar: AfOr87 334 423 . KQ414828.1 28556 29233 + 260 M 75 225 5 0 2 I 0 406 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28557 29233 260 + . gene_id 7 ; sequence AfOr87 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 28557 28781 . + . KQ414828.1 exonerate:protein2genome:local exon 28557 28781 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 28782 28783 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 28782 29191 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 29190 29191 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 29192 29233 . + . KQ414828.1 exonerate:protein2genome:local exon 29192 29233 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28557 29233 260 + . alignment_id 7 ; Query AfOr87 ; Align 28557 335 225 ; Align 29192 410 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 228 Query range: 324 -> 410 Target range: 23571 -> 23829 325 : ArgLeuIlePheValPheHisIleThrGlySerLeuCysGlnLeuLeuLeuPheThrTyr : 344 |||:!! !|||!.!! ! !:!:! ! !.!!:!! !!||||||! !:!!||||||||| ArgValAlaPheAlaCysPheLeuMetMetGlyMetSerGlnLeuTrpMetPheThrTyr 23572 : CGCGTTGCTTTCGCGTGCTTCTTGATGATGGGCATGAGTCAACTATGGATGTTCACGTAT : 23629 345 : SerCysAspSerLeuIleGlnGluSerThrAsnValGlySerAlaValTyrSerGlyPro : 364 |||||||||!!!:!!! ! !|||||| !|||:!!!.!..!:!!||||||:!!|||||| SerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyPro 23630 : AGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCA : 23689 365 : TrpIleCysLeuProMetAsnArgThrGlyArgThrLeuArgArgAspLeuLysMetVal : 384 |||||| !|||||||||:!!!:! !|||!:! !||||||!:!!!:|||:!!|||:!! TrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysGluLeuGlnMetLeu 23690 : TGGATAAATTTACCAATGGACAAATTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTC : 23749 385 : IleIleArgSerArgLysProCysCysLeuThrAlaSerArgPhePheProValSerLeu : 404 |||:!:|||:!!|||::!|||! !..!|||||||||!!! !!|||||| !!:!!|||||| IleLeuArgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleSerLeu 23750 : ATCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTC : 23809 405 : GluThrCysThrThrVal : 410 ||||||! !|||! !||| GluThrPheThrLysVal 23810 : GAAACCTTTACTAAGGTA : 23829 vulgar: AfOr87 324 410 . KQ414828.1 23571 23829 + 228 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 23572 23829 228 + . gene_id 8 ; sequence AfOr87 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 23572 23829 . + . KQ414828.1 exonerate:protein2genome:local exon 23572 23829 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 23572 23829 228 + . alignment_id 8 ; Query AfOr87 ; Align 23572 325 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 221 Query range: 328 -> 410 Target range: 38514 -> 38760 329 : ValPheHisIleThrGlySerLeuCysGlnLeuLeuLeuPheThrTyrSerCysAspSer : 348 :!!||| ! ! ! !.!!:!! !!||||||! !:!!||||||||||||||||||!!! MetPheAlaThrMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCys 38515 : ATGTTCGCAACGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGC : 38572 349 : LeuIleGlnGluSerThrAsnValGlySerAlaValTyrSerGlyProTrpIleCysLeu : 368 :!!! ! !|||||| !|||:!!!.!..!:!!||||||:!!|||||||||||| !||| IleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeu 38573 : ATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTA : 38632 369 : ProMetAsnArgThrGlyArgThrLeuArgArgAspLeuLysMetValIleIleArgSer : 388 ||||||:::::: |||::: ||||||!:!||||||:!!:!!:!!|||:!:|||:!! ProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAla 38633 : CCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCG : 38692 389 : ArgLysProCysCysLeuThrAlaSerArgPhePheProValSerLeuGluThrCysThr : 408 |||::!|||! !! !|||||||||!!! !!|||||| !!:!!||||||||||||! !||| ArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThr 38693 : AGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACT : 38752 409 : ThrVal : 410 ! !||| LysVal 38753 : AAGGTA : 38760 vulgar: AfOr87 328 410 . KQ414828.1 38514 38760 + 221 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38515 38760 221 + . gene_id 9 ; sequence AfOr87 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38515 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38515 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38515 38760 221 + . alignment_id 9 ; Query AfOr87 ; Align 38515 329 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 80 -> 166 Target range: 21885 -> 22143 81 : PheGlyAsnCysAlaTyrThrAlaCysAsnIleLeuCysLeuIleMetValLeuLeuLys : 100 ||| !||| !|||! !|||||||||! !|||..!|||:!!:!!! !:!!:!!||| PheGlnValCysMetTyrMetAlaCysAsnSerLeuAlaLeuValLeuAspIleIleLys 21886 : tttcaggTTTGCATGTACATGGCATGCAACAGTTTAGCCCTGGTTTTGGATATAATCAAG : 21943 101 : LeuPheValLeuPheValHisArgLysGluPheIleAspLeuLeuValTyrThrHisGlu : 120 :!!|||||||||.!!|||!..!:!|||:!!|||:!!! !|||:!!! !|||! !!!.:!! IlePheValLeuLeuValArgLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLys 21944 : ATTTTCGTCCTACTCGTACGGAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAG : 22003 121 : HisPheTrpHisThrAsnTyrThrTyrAsnGluLeuLeuLeuValGluLysCysLysArg : 140 :!!||||||||| !|||||| ! ! :!!||| !! !:!!:!!! ! ! ...|||||| AsnPheTrpHisLeuAsnTyrAspGlnAspGluAsnSerIleIleAlaHisAlaLysArg 22004 : AATTTTTGGCATTTGAACTACGACCAGGACGAGAATTCTATTATCGCACACGCGAAACGA : 22063 141 : IleCysMetLeuCysIleThrLeuIleAsnValCysAlaGlnGlyThrIleValSerTyr : 160 ! |||!!:! !! !:!! !:!!.!!::: !!|||:!!|||..!|||:!! !!|||||| ThrCysIleTyrPheValCysValPheSerPheCysSerGlnSerThrValPheSerTyr 22064 : ACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTAT : 22123 161 : ValLeuThrProIleVal : 166 :!!:!!! !|||.!!||| IleIleArgProPheVal 22124 : ATAATAAGGCCATTTGTA : 22143 vulgar: AfOr87 80 166 . KQ414828.1 21885 22143 + 204 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21886 22143 204 + . gene_id 10 ; sequence AfOr87 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 21886 22143 . + . KQ414828.1 exonerate:protein2genome:local exon 21886 22143 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21886 22143 204 + . alignment_id 10 ; Query AfOr87 ; Align 21886 81 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 19 -> 81 Target range: 712 -> 898 20 : SerSerArgGlyLysAspPheAlaLeuLeuMetThrAlaPheLeuMetLysIleValGlyLeuT : 41 !!!|||!.!..!!:!|||.!.|||:!! !:!:|||||||||! !:!!||||||:!!|||!!!| ThrSerAsnAsnArgAspIleAlaValThrValThrAlaPheTyrLeuLysIleIleGlyPheT 713 : ACTTCGAATAACAGGGACATAGCGGTGACCGTTACGGCTTTCTACTTGAAAATTATCGGCTTCT : 776 42 : rpLeuAlaGluSerLysGluGluGlnArgArgArgHisLeuThrLeuMetTyrThrValValAl : 62 ||||||||!!:!!! ! ||||||:!:||||||||| ...... !! !:!|||:!! !! rpLeuAlaAspThrTyrGluGluLysArgArgArgLysPheAlaGlnAsnPheThrIlePheMe 777 : GGTTAGCTGACACTTACGAGGAGAAacgtcgaagaaaattcgcgcAGAATTTCACGATATTTAT : 839 63 : aIleLeuPheGlyValTrpValGlnPheArgAspPheTyrTyrSerTrpProAsnPhe : 81 !:!::!!! !!.!||| :!!:!! ||||||.!!||||||!!!||| !:!!||| tLeuValCysAlaValValIleGluThrArgAspIleTyrTyrThrTrpGlyAspPhe 840 : GCTGGTGTGCGCTGTGGTAATTGAGACGAGGGATATCTATTACACCTGGGGTGATTTC : 898 vulgar: AfOr87 19 81 . KQ414828.1 712 898 + 149 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 713 898 149 + . gene_id 11 ; sequence AfOr87 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 713 898 . + . KQ414828.1 exonerate:protein2genome:local exon 713 898 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 713 898 149 + . alignment_id 11 ; Query AfOr87 ; Align 713 20 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 164 -> 207 Target range: 27339 -> 27465 165 : IleValGluAsnIleGlyArgAsnHisSerAspArgValLeuProPheAsnMetTrpVal : 184 |||::: |||:!!|||!:!|||.!.|||||||||! !! ! !|||:!!|||||| !! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPhe 27340 : attttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTC : 27397 185 : AspLeuProLysLeuSerValSerProTyrTyrGluIleLeuPheValLeuGlnValLeu : 204 ||||||||| |||||||||!!!||||||||||||||| ::!:!!:!!||||||||| AspLeuPro---LeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeu 27398 : GATCTACCA---TTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTA : 27454 205 : SerLeuTyr : 207 !!:!!!:! ProIlePhe 27455 : CCAATTTTC : 27465 vulgar: AfOr87 164 207 . KQ414828.1 27339 27465 + 121 M 23 69 G 1 0 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27340 27465 121 + . gene_id 12 ; sequence AfOr87 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27340 27465 . + . KQ414828.1 exonerate:protein2genome:local exon 27340 27465 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 27340 27465 121 + . alignment_id 12 ; Query AfOr87 ; Align 27340 165 69 ; Align 27409 189 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1475 Query range: 1 -> 410 Target range: 15106 -> 19906 2 : SerPheLeuGluSerAspIleSerValAsnLeuThrSerIlePheMetLysIleIleGly : 21 |||||| ! ..!|||||||||:!!!:!|||||||||:!!||||||||||||:!!||| SerPheThrThrAspAspIleSerIleSerLeuThrSerValPheMetLysIleValGly 15107 : AGTTTCACCACCGATGACATATCAATCAGCCTGACGTCCGTTTTCATGAAGATCGTTGGA : 15164 22 : LeuTrpMetAlaThrAsnArgHisGluLysArgIleArgAsnIleThrIleIleTyrSer : 41 ||||||||||||:!!|||||| !|||:!!|||:!!||||||||||||:!: !|||!!! LeuTrpMetAlaSerAsnArgPheGluGlnArgValArgAsnIleThrLeuCysTyrThr 15165 : CTGTGGATGGCGTCGAACCGTTTCGAGCAACGAGTACGAAATATCACGCTGTGTTACACG : 15224 42 : LeuIleAlaIleLeuPheAlaLeuTrpIleGlnSerMetAsnIleTyrTyrSerTrpGly : 61 |||||||||||||||||||||||||||||||||! !! !:!!:!:||||||||||||||| LeuIleAlaIleLeuPheAlaLeuTrpIleGlnMetThrAspLeuTyrTyrSerTrpGly 15225 : CTGATCGCGATTCTCTTCGCCCTGTGGATACAAATGACGGATTTGTATTACTCGTGGGGA : 15284 62 : AspPheSer >>>> Target Intron 1 >>>> AlaCysLeuPheSerThrSerA : 72 ||||||.!! 891 bp |||||||||!:!!!!.!!!!!| AspPheGly++ ++AlaCysLeuTyrThrAlaCysA 15285 : GATTTTGGTgt.........................agGCCTGTTTATATACTGCATGCA : 16208 73 : snIleLeuSerLeuThrMetProLeuLeuLysIlePheIleLeuLeuThrHisLysLysA : 92 |||||||||||||||||!!:|||!!!|||||||||.!!:!!||||||.!!||||||...| snIleLeuSerLeuThrIleProPheLeuLysIleLeuValLeuLeuAlaHisLysAsnA 16209 : ACATTTTATCGTTAACAATACCGTTTCTCAAGATACTCGTCTTGCTTGCAcacaaaaatg : 16268 93 : spPhePheHisLeuIleSerTyrMetGlnArgAsnPheLeuHisGlyAsnTyrAspAspT : 112 ||||||||||||||||| !:!!:!:||||||.!.|||||||||!.!:!!|||||||||| spPhePheHisLeuIleLeuHisLeuGlnArgGluPheLeuHisAlaAspTyrAspAspT 16269 : atttttttcatttgattcTGCACCTACAACGAGAATTCTTGCATGCAGATTACGACGACT : 16328 113 : yrGluArgGluValValPheGlyCysLysArgLysCysThrPhePheIleCysPhePheT : 132 |||||!:!:!!:!!:!!.!!||||||:!!|||:!!||||||||||||:!!|||||||||| yrGluLysLysIleLeuLeuGlyCysGlnArgGlnCysThrPhePheValCysPhePheT 16329 : ACGAGAAAAAGATTTTGCTCGGTTGCCAACGTCAATGTACCTTCTTCGTTTGTTTCTTCA : 16388 133 : hrPheLeuThrMetAlaThrValAlaSerTyrIlePheSerProLeuIle{G} >>>> : 149 ||.!!!!!|||! !.!|||||| !||||||||| !!!:!|||||||||{!} hrLeuPheThrLysGlyThrValIleSerTyrIleValAsnProLeuIle{A}++ 16389 : CACTTTTCACTAAAGGAACTGTTATCTCGTACATCGTTAATCCGCTTATT{G}gt..... : 16442 150 : Target Intron 2 >>>> {lu}AsnIleGlyLysAsnGluSerSerArgMetLeuP : 161 1386 bp { !}|||||||||||||||||||||..!|||!!:|||| ++{la}AsnIleGlyLysAsnGluSerGluArgIleLeuP 16443 : ....................ag{ca}aatattggaaaaaatgagTCAGAGAGGATACTTC : 17861 162 : roPheAsnMetTrpValAsnLeuProLeuAsnValThrProTyrPheGluIleThrTyrT : 181 |||||||||||||||||||||||||||||::::!!|||||||||!:!|||||||||:::: roPheAsnMetTrpValAsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheS 17862 : CATTTAATATGTGGGTCAACTTGCCATTATCAATGACGCCATATTACgaaataacttttt : 17921 182 : hrLeuGln >>>> Target Intron 3 >>>> ValLeuSerLeuAlaLeuSerLe : 191 ::|||||| 98 bp ::: ..!|||||||| erLeuGln++ -+LysIlePhe***ValLeuSerLe 17922 : cattaCAGgt.........................tgaaaattttttaggtTCTGTCTCT : 18049 192 : uTyrHisIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHi : 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| uTyrHisIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHi 18050 : GTACCATATTGGCGTGAGTTATTTCTgcttcgacaattttttatgcatCATGAACTTGCA : 18109 212 : sValAlaGlyGlnPheGlnValLeuGlnHisArgIleSerAsnIleIleAspSerMetAs : 231 |!.!||| !||||||!:!|||||||||:!!|||!!::!!|||!!:! !|||! !! !:: sAlaAlaThrGlnPheArgValLeuGlnTyrArgMetAlaAsnMetThrAspLeuLysAs 18110 : CGCGGCTACTCAGTTTCGAGTATTGCAATACCGAATGGCGAATATGACCGATTTAAAGGa : 18169 232 : nLysGluLysGluGluLysArgGluLysLeuThrValAspSerSerTyrLeuAlaSerLy : 251 :||||||::::::|||:::... ||| !!:!|||..!|||:!!! !!!!|||!!!:! pLysGluArgLysGluArgAsnMetLysThrSerValSerSerAlaCysPheAlaThrGl 18170 : caaagagaggaaagagagaaatatgaAGACAAGTGTGAGTTCGGCGTGCTTTGCAACAGA : 18229 252 : sCysTyrAlaIlePheLysLysCysIleArgGlnHisGlnAlaLeuIleAlaTyrCysAr : 271 !|||||| !:!!.!!||| ! ! !||||||||||||||| !|||||||||||||||!. uCysTyrAsnValLeuLysAspTyrIleArgGlnHisGlnAsnLeuIleAlaTyrCysAs 18230 : ATGTTACAACGTTCTCAAAGATTATATCAGACAGCATCAGAACCTGATTGCTTATTGCAA : 18289 272 : gLysLeuGluGlnValPheAsnLeuIleValLeuGluGlnValLeuMetPheSerLeuLe : 291 !|||||||||:!!|||||||||:!!|||||||||! !|||:!!||||||||||||:!!|| nLysLeuGluLysValPheAsnIleIleValLeuGlyGlnLeuLeuMetPheSerMetLe 18290 : CAAACTCGAGAAAGTGTTCAATATCATTGTTCTGGGGCAATTGTTAATGTTCAGCATGTT : 18349 292 : uIleCysLeuAspGlyTyrGlnIleLeuLeu >>>> Target Intron 4 >>>> : 302 ||||||||||||||||!:!|||||||||:!! 975 bp uIleCysLeuAspGlyPheGlnIleLeuMet++ ++ 18350 : GATCTGTCTCGATGGATTTCAGATACTTATGgt.........................ag : 19355 303 : AlaAsnGlyAspValLysThrArgLeuIlePheSerPheHisIleLeuGlyCysLeuCys : 321 |||||| ! !..!!:!|||||||||||||||! !||||||||| !!.!|||:!!||| AlaAsnThrProThrArgThrArgLeuIlePheIlePheHisIleGlyAlaCysMetCys 19356 : GCAAATACACCTACCAGAACCCGACTGATTTTCATCTTTCACATAGGAGCATGCATGTGT : 19414 322 : GlnLeuLeuMetPheSerTyrSerCysAspCysIleIleArgLysSerValAsnValAla : 341 |||||||||||||||!!!||||||||||||||||||||||||:!!|||..!!:!..!||| GlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSerThrSerThrAla 19415 : CAATTGCTGATGTTTACCTACAGCTGCGACTGCATCATAAGAGAAAGCACGAGCACCGCC : 19474 342 : ThrAlaAlaTyrGlyGlyProTrpProLeuLeuSerMetThrThrSerGlyArgMetIle : 361 !|||!.!|||.!!||||||||| !!|||||| !!|||!:!.!!..!|||!:!|||||| GluAlaValTyrSerGlyProTrpThrLeuLeuProMetSerAlaAspGlyLysMetIle 19475 : GAGGCGGTGTACAGCGGTCCCTGGACACTTTTACCAATGAGCGCAGACGGAAAAATGATA : 19534 362 : ArgLysAspLeuIleLeuValIleMetArgSerSerValProCysCysLeuThrGlyLys : 381 ||||||||||||!!:|||||||||||||||||||||||||||||||||||||||!.!!:! ArgLysAspLeuMetLeuValIleMetArgSerSerValProCysCysLeuThrAlaArg 19535 : AGGAAAGATTTGATGCTCGTTATCATGAGATCGAGCGTACCTTGTTGCTTGACAGCCAGA : 19594 382 : GlyPhePheMetValSerLeuGluThrTyrThrSer >>>> Target Intron 5 > : 394 |||||||||:!:|||||||||||||||||||||.!! 223 bp GlyPhePheValValSerLeuGluThrTyrThrGly++ 19595 : GGATTCTTCGTCGTGTCTTTAGAAACGTACACAGGGgt...................... : 19635 395 : >>> ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuLysGlnArgAlaGlu : 410 |||||||||||||||||||||||||||||||||||||||||||||:!!||| ++ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuLysGlnArgSerGlu 19636 : ...agGTTTTAAGCACCGCAGCCTCATACTTTACGTTGCTGAAGCAAAGATCAGAG : 19906 vulgar: AfOr91_2 1 410 . KQ414828.1 15106 19906 + 1475 M 63 189 5 0 2 I 0 887 3 0 2 M 84 252 S 0 1 5 0 2 I 0 1382 3 0 2 S 1 2 M 34 102 5 0 2 I 0 94 3 0 2 M 118 354 5 0 2 I 0 971 3 0 2 M 92 276 5 0 2 I 0 219 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15107 19906 1475 + . gene_id 1 ; sequence AfOr91_2 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 15107 15295 . + . KQ414828.1 exonerate:protein2genome:local exon 15107 15295 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 15296 15297 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 15296 16186 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 16185 16186 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 16187 16439 . + . KQ414828.1 exonerate:protein2genome:local exon 16187 16439 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 16440 16441 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 16440 17825 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 17824 17825 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 17826 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17826 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18027 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 18026 18027 . + . intron_id 2 ; splice_site "tg" KQ414828.1 exonerate:protein2genome:local cds 18028 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18028 18381 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19906 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19906 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15107 19906 1475 + . alignment_id 1 ; Query AfOr91_2 ; Align 15107 2 189 ; Align 16187 65 252 ; Align 17828 150 102 ; Align 18028 184 354 ; Align 19357 302 276 ; Align 19856 394 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 698 Query range: 62 -> 394 Target range: 21885 -> 23829 63 : PheSerAlaCysLeuPheSerThrSerAsnIleLeuSerLeuThrMetProLeuLeuLys : 82 |||.....!|||:!!!:!! !.!!!!!|||! !|||:!!|||..!:!! !:!!:!!||| PheGlnValCysMetTyrMetAlaCysAsnSerLeuAlaLeuValLeuAspIleIleLys 21886 : tttcaggTTTGCATGTACATGGCATGCAACAGTTTAGCCCTGGTTTTGGATATAATCAAG : 21943 83 : IlePheIleLeuLeuThrHisLysLysAspPhePheHisLeuIleSerTyrMetGlnArg : 102 ||||||:!!||||||..!!..|||||| ! |||.!! !||||||..!|||||||||!:! IlePheValLeuLeuValArgLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLys 21944 : ATTTTCGTCCTACTCGTACGGAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAG : 22003 103 : AsnPheLeuHisGlyAsnTyrAspAspTyrGluArgGluValValPheGlyCysLysArg : 122 ||||||! !||| !|||||||||.!. !!|||!.!...:!!:!! !...|||||| AsnPheTrpHisLeuAsnTyrAspGlnAspGluAsnSerIleIleAlaHisAlaLysArg 22004 : AATTTTTGGCATTTGAACTACGACCAGGACGAGAATTCTATTATCGCACACGCGAAACGA : 22063 123 : LysCysThrPhePheIleCysPhePheThrPheLeuThrMetAlaThrValAlaSerTyr : 142 ! !|||! !!:!|||:!!||| !!|||:!!|||! !:!!...:!!|||||| !|||||| ThrCysIleTyrPheValCysValPheSerPheCysSerGlnSerThrValPheSerTyr 22064 : ACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTAT : 22123 143 : IlePhe{Se} >>>> Target Intron 1 >>>> {r}ProLeuIleGluAsnIle : 151 |||.!.{||} 170 bp {|} :::::: |||:!! IleIle{Se}+- +-{r}PheIleLeuAlaAsnLeu 22124 : ATAATA{AG}gc.........................aa{t}tttattttagcaAATCTT : 22320 152 : GlyLysAsnGluSerSerArgMetLeuProPheAsnMetTrpValAsnLeuProLeuAsn : 171 |||||||||||||||..!||| ! ! !!:!:!!||||||:!!:!!|||||||||::! GlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuProLeuSer 22321 : GGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCATTATCC : 22380 172 : ValThrProTyrPheGluIleThrTyrThrLeuGlnValLeuSerLeu >>>> Targe : 188 ||||||||||||:::||||||||||||! !:!!||||||||| !!:!! ValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuProIle-+ 22381 : GTAACAccatattatgaaattacttACATAATACAGGTATTACCAATTtt.......... : 22433 189 : t Intron 2 >>>> AlaLeuSerLeuTyrHisIleGlyValSerTyrPheCysPheA : 202 295 bp |||||||||:!!|||!!.:!!.!!!.!!!!|||.!!||||||| ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheA 22434 : ...............agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttg : 22768 203 : spAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGlnPheGlnValLeuGlnHisA : 222 || ...... |||::: |||||||||||||||||||||!:::!!||||||:!!| spIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrA 22769 : atatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACA : 22828 223 : rgIleSerAsnIleIleAspSerMetAsnLysGluLysGluGluLysArgGluLysLeuT : 242 |||||:!!|||:!: ||| !..|||! !! !:!!!..!!!|||!!.! !! rgIleAlaAsnVal------SerGlyLeuSerGluIleValLysSerSerGluAsnProS 22829 : GAATTGCCAATGTG------TCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAA : 22882 243 : hrValAspSerSerTyrLeuAlaSerLysCysTyrAlaIlePheLysLysCysIleArgG : 262 :!..!|||..!! !||| :!!..!||||||||| !! ||||||!!.||||||!:!| erThrAspGluLeuTyr---SerGluLysCysTyrIleLysPheLysAsnCysIleGlnG 22883 : GCACAGATGAATTATAC---TCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAAC : 22939 263 : lnHisGlnAlaLeuIleAlaTyrCysArgLysLeuGluGlnValPheAsnLeuIleValL : 282 |||||||||||||||||! !!:!||| !! !||||||:!!||||||!..:!!||||||| lnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleValL 22940 : AGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTAC : 22999 283 : euGluGlnValLeuMetPheSerLeuLeuIleCysLeuAspGlyTyrGlnIleLeuLeuA : 302 ||! !||||||||||||! !|||:!!|||||||||!!! !|||||||||:!!||||||! euGlyGlnValLeuMetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeuV 23000 : TCGGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGG : 23059 303 : laAsnGlyAspValLys{T} >>>> Target Intron 3 >>>> {hr}ArgLeuI : 311 .!!:! !!!: ! ! {|} 492 bp {||}|||:!! alSerIleGluSerTyr{T}-+ +-{hr}ArgValA 23060 : TGAGTATCGAAAGCTAT{A}at.........................at{CG}CGCGTTG : 23578 312 : lePheSerPheHisIleLeuGlyCysLeuCysGlnLeuLeuMetPheSerTyrSerCysA : 331 !|||:!!! ! !:!::!! ! !!:!! !!||||||! !||||||!!!|||||||||| laPheAlaCysPheLeuMetMetGlyMetSerGlnLeuTrpMetPheThrTyrSerCysA 23579 : CTTTCGCGTGCTTCTTGATGATGGGCATGAGTCAACTATGGATGTTCACGTATAGTTGCG : 23638 332 : spCysIleIleArgLysSerValAsnValAlaThrAlaAlaTyrGlyGlyProTrpProL : 351 ||||||||! !! !:!!|||:!!|||:!!||| !:!!!.!|||!.!||||||||| ! spCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleA 23639 : ATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAA : 23698 352 : euLeuSerMetThrThrSerGlyArgMetIleArgLysAspLeuIleLeuValIleMetA : 371 !||| !!||| !! !! !|||!:!:!!:!!||||||!!:||| !:!!:!!|||:!!| snLeuProMetAspLysPheGlyLysLeuLeuArgLysGluLeuGlnMetLeuIleLeuA 23699 : ATTTACCAATGGACAAATTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGA : 23758 372 : rgSerSerValProCysCysLeuThrGlyLysGlyPhePheMetValSerLeuGluThrT : 391 ||:!!!!! !|||! !..!||||||!.! ||||||||| :!!||||||||||||! rgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrP 23759 : GGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCT : 23818 392 : yrThrSerVal : 394 :!|||!.!||| heThrLysVal 23819 : TTACTAAGGTA : 23829 vulgar: AfOr91_2 62 394 . KQ414828.1 21885 23829 + 698 M 82 246 S 0 2 5 0 2 I 0 166 3 0 2 S 1 1 M 42 126 5 0 2 I 0 291 3 0 2 M 39 117 G 2 0 M 19 57 G 1 0 M 59 177 S 0 1 5 0 2 I 0 488 3 0 2 S 1 2 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21886 23829 698 + . gene_id 2 ; sequence AfOr91_2 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 21886 22133 . + . KQ414828.1 exonerate:protein2genome:local exon 21886 22133 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22134 22135 . + . intron_id 1 ; splice_site "GC" KQ414828.1 exonerate:protein2genome:local intron 22134 22303 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22302 22303 . + . intron_id 0 ; splice_site "aa" KQ414828.1 exonerate:protein2genome:local cds 22304 22430 . + . KQ414828.1 exonerate:protein2genome:local exon 22304 22430 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22431 22432 . + . intron_id 2 ; splice_site "TT" KQ414828.1 exonerate:protein2genome:local intron 22431 22725 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 23077 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 23077 . + . insertions 0 ; deletions 3 KQ414828.1 exonerate:protein2genome:local splice5 23078 23079 . + . intron_id 3 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 23078 23569 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 23568 23569 . + . intron_id 2 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local cds 23570 23829 . + . KQ414828.1 exonerate:protein2genome:local exon 23570 23829 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21886 23829 698 + . alignment_id 2 ; Query AfOr91_2 ; Align 21886 63 246 ; Align 22305 146 126 ; Align 22726 188 117 ; Align 22843 229 57 ; Align 22900 249 177 ; Align 23572 309 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 692 Query range: 149 -> 410 Target range: 2882 -> 6468 150 : AsnIleGlyLysAsnGluSerSerArgMetLeuProPheAsnMetTrpValAsnLeuProLe : 170 !::||||||||||||||||||..!|||:!:||| ! !!|||.!.|||:!!:!!||||||:! SerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuProIl 2883 : AgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCCGAT : 2943 171 : uAsnValThrProTyrPheGluIleThrTyrThrLeuGlnValLeuSerLeu >>>> Tar : 188 !!.!:!!|||||||||:::|||||| :::|||:!!|||||| ::: eThrIleThrProTyrTyrGluIleLeuPheThrIleGlnValThr***Ile-+ 2944 : AACCATCACACCATactatgaaatattatttacgaTACAGgtaacgtgaatttt........ : 2999 189 : get Intron 1 >>>> AlaLeuSerLeuTyrHisIleGlyValSerTyrPheCysPheA : 202 394 bp !!!!! !:!! :!!:!! !!:!!||||||.!!|||.!!| ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleA 3000 : .................agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCG : 3433 203 : spAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGlnPheGlnValLeuGlnHisArg : 222 ||||||||||||||!!:!!:|||||||||..!||| !||||||!:!:!!||||||:!!||| spAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArg 3434 : ACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGA : 3493 223 : IleSerAsnIleIleAspSerMetAsnLysGluLysGluGluLysArgGluLysLeuThrVa : 243 :!:||||||:!: !! !:!! !!.|||:::...:::||| ...||| ||| LeuSerAsnValCysGlyAla------AsnGluArgSerAspLysIleSerLysLysThrPr 3494 : CTGTCGAATGTGTGCGGTGCA------AACGAACGTAgcgataaaatttcgaaaaaaacaCC : 3550 244 : lAspSerSerTyrLeuAlaSerLysCysTyrAlaIlePheLysLysCysIleArgGlnHisG : 264 !..!!:!||| ..!:!!|||||||||! ||||||!!.||||||!:!||||||| oSerAsnSer---------AspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisG 3551 : GTCCAATTCG---------GACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATC : 3604 265 : lnAlaLeuIleAlaTyrCysArgLysLeuGluGlnValPheAsnLeuIleValLeuGluGln : 284 |||||||||||! !||||||!.!||||||:!!:!!||||||..!:!!.!!||||||! !||| lnAlaLeuIleGluTyrCysAsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGln 3605 : AAGCACTCATAGAATACTGTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAA : 3664 285 : ValLeuMetPheSerLeuLeuIleCysLeuAspGlyTyrGlnIleLeuLeu >>>> Targ : 302 ||||||:!:||||||||||||!!:||||||||||||||| :!::!!:!! ValLeuLeuPheSerLeuLeuMetCysLeuAspGlyTyr---LeuValMet++ 3665 : GTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGGATAT---TTGGTGATGgt......... : 3717 303 : et Intron 2 >>>> AlaAsnGlyAspValLysThrArgLeuIlePheSerPheHisIl : 316 457 bp ! !:!! ! !:!!! ! !||||||! !|||! !||||||:! ++GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLe 3718 : ................agGAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCT : 4214 317 : eLeuGlyCysLeuCysGlnLeuLeuMetPheSerTyrSerCysAspCysIleIleArgLysS : 337 ! !|||||||||||||||||||||||||||!!!|||||||||||||||:!:||||||:!!| uThrGlyCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluS 4215 : AACGGGATGCCTGTGCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAA : 4277 338 : erValAsnValAlaThrAlaAlaTyrGlyGlyProTrpProLeuLeuSerMetThrThrSer : 357 ||:!!|||||||||!.!||| !|||! ! !! !!||| !! !||| !!||| !! !||| erLeuAsnValAlaAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSer 4278 : GCTTGAACGTGGCCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCT : 4337 358 : GlyArgMetIleArgLysAspLeuIleLeuValIleMetArgSerSerValProCysCysLe : 378 |||||||||:!:||||||||||||! !!!!|||||| ||||||!!!|||||||||||||| GlyArgMetLeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLe 4338 : GGGCGAATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCT : 4400 379 : uThrGlyLysGlyPhePheMetValSerLeuGluThrTyrThrSer >>>> Target In : 394 ||||!.! ||||||||| |||||||||||||||||||||||| 1970 uThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 4401 : CACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt.............. : 4450 395 : tron 3 >>>> ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuLysGlnArgAlaG : 410 bp |||:!!|||||||||!.!||||||||||||||||||!:!|||||| !| ++ValIleSerThrAlaValSerTyrPheThrLeuLeuArgGlnArgIleG 4451 : ...........agGTTATAAGTACAGCAGTGTCGTACTTCACACTGTTAAGGCAACGTATAG : 6466 411 : lu : 410 || lu 6467 : AG : 6468 vulgar: AfOr91_2 149 410 . KQ414828.1 2882 6468 + 692 M 38 114 5 0 2 I 0 390 3 0 2 M 42 126 G 2 0 M 15 45 G 3 0 M 48 144 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2883 6468 692 + . gene_id 3 ; sequence AfOr91_2 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2883 2996 . + . KQ414828.1 exonerate:protein2genome:local exon 2883 2996 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2997 2998 . + . intron_id 1 ; splice_site "tt" KQ414828.1 exonerate:protein2genome:local intron 2997 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 0 ; deletions 6 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6468 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6468 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2883 6468 692 + . alignment_id 3 ; Query AfOr91_2 ; Align 2883 150 114 ; Align 3391 188 126 ; Align 3517 232 45 ; Align 3562 250 144 ; Align 3706 299 9 ; Align 4172 302 276 ; Align 6418 394 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 682 Query range: 62 -> 410 Target range: 31964 -> 34310 63 : PheSerAlaCysLeuPheSerThrSerAsnIleLeuSerLeuThrMetProLeuLeuLys : 82 ......!.!|||:!!!:!! !.!!!!!|||! !:!!:!!|||..!:!! !:!!:!!||| LeuGlnValCysMetTyrMetAlaCysAsnSerIleAlaLeuValLeuAspIleIleLys 31965 : cttcagGTTTGCATGTACATGGCATGCAACAGTATAGCCCTGGTTTTGGATATAATCAAG : 32022 83 : IlePheIleLeuLeuThrHisLysLysAspPhePheHisLeuIleSerTyrMetGlnArg : 102 ||||||:!!|||:!!..!!..|||||| ! |||.!! !||||||..!|||||||||::: IlePheValLeuValValArgLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLys 32023 : ATTTTCGTCCTAGTCGTACGGAAGAAAAAGTTTCTCGGTCTGATTGAGTACATgcagaag : 32082 103 : AsnPheLeuHisGlyAsnTyrAspAspTyrGluArgGluValValPheGlyCysLysArg : 122 ||||||...||| |||||||||.!. !!|||!.!...:!!:!! !...|||||| AsnPhePheHisLeuAsnTyrAspGlnAspGluAsnSerIleIleAlaHisAlaLysArg 32083 : aatttctttcatttgaaCTACGATCAGGACGAGAATTCTATTATCGCACACGCGAAACGA : 32142 123 : LysCysThrPhePheIleCysPhePheThrPheLeuThrMetAlaThrValAlaSerTyr : 142 ! !|||! !!:!|||:!!||| !!|||:!!|||! !:!!...:!!|||||| !|||||| ThrCysIleTyrPheValCysValPheSerPheCysSerGlnSerThrValPheSerTyr 32143 : ACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTAT : 32202 143 : IlePhe{Se} >>>> Target Intron 1 >>>> {r}ProLeuIleGluAsnIle : 151 |||.!.{||} 170 bp {|} :::::: |||:!! IleIle{Se}+- +-{r}PheIleLeuAlaAsnLeu 32203 : ATAATA{AG}gc.........................aa{t}tttattttagcaAATCTT : 32399 152 : GlyLysAsnGluSerSerArgMetLeuProPheAsnMetTrpValAsnLeuProLeuAsn : 171 |||||||||||||||..!||| ! ! !!:!:!!||||||:!!:!!|||||||||::! GlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuProLeuSer 32400 : GGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCATTATCC : 32459 172 : ValThrProTyrPheGluIleThrTyrThrLeuGlnValLeuSerLeu<->AlaLeuSer : 190 ||||||||||||:::||||||||||||! !:!!||||||||| !!:!! :!! !... ValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuProIlePheSerArgGln 32460 : GTAACAccatattatgaaattacttACATAATACAGGTATTACCAATTTTCTCAAGGCaa : 32519 191 : LeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPheLeuCys{Il} >>>> T : 207 ||| |||::: |||||| |||{ } ThrIlePheIleTyr***HisTyrTyrArgGlnLysAsnPhe***Cys{As}-+ 32520 : actatatttatatattaacattattatagacagaaaaatttttaatgc{gA}at...... : 32574 208 : arget Intron 2 >>>> {e}MetAsnLeuHisValAlaGlyGlnPheGlnValLeu : 219 292 bp {!}||| !|||||||||||||||||||||!:::!!||| +-{p}MetCysLeuHisValAlaGlyGlnPheArgIleLeu 32575 : ...................at{t}atgtgTCTACACGTGGCTGGTCAGTTTCGTATACTA : 32898 220 : GlnHisArgIleSerAsnIleIleAspSerMetAsnLysGluLysGluGluLysArgGlu : 239 |||:!!||||||:!!|||:!: ..! !...:!! !! !|||!!!.!. GlnTyrArgIleAlaAsnVal---------SerGlyLeuSerGluIleValLysSerAsn 32899 : CAATACAGAATTGCCAATGTG---------TCAGGTCTAAGCGAGATAGTGAAGAGCAAT : 32949 240 : LysLeuThrValAspSerSerTyrLeuAlaSerLysCysTyrAlaIlePheLysLysCys : 259 ! !||| ! :!!..!! ! !:!!..!||||||||| !! ||||||!!.||| AspAsnThrSerThrAlaGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCys 32950 : GATAATACAAGCACGGCTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGC : 33009 260 : IleArgGlnHisGlnAlaLeuIleAlaTyrCysArgLysLeuGluGlnValPheAsnLeu : 279 |||!:!|||||||||||||||||| :::|||... ||||||:!!||||||!..:!! IleGlnGlnHisGlnAlaLeuIleGluPheCysGluIleLeuGluGluValPheThrVal 33010 : ATTCAACAACATCAGGCACTaattgaattttgtgaaatactCGAAGAGGTATTCACGGTA : 33069 280 : IleValLeuGluGlnValLeuMetPheSerLeuLeuIleCysLeuAspGlyTyrGlnIle : 299 |||||||||! !||||||||||||||||||:!!:!!||||||!!!! !||||||:!!:!! IleValLeuGlyGlnValLeuMetPheSerIleIleIleCysPheAlaGlyTyrGluVal 33070 : ATCGTACTCGGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTA : 33129 300 : LeuLeu >>>> Target Intron 3 >>>> AlaAsnGlyAspValLysThrArgL : 310 |||||| 406 bp !!.. ! !!:!!:!!|||: LeuLeu++ ++IleThrLeuProPheGluSerArgV 33130 : CTCCTGgt.........................agATAACGTTACCATTTGAATCGCGCG : 33568 311 : euIlePheSerPheHisIleLeuGlyCysLeuCysGlnLeuLeuMetPheSerTyrSerC : 330 !! !|||!!!! ! !:!::!! ! !!:!! !!||||||! !||||||!!!||||||| alAlaPheThrCysPheLeuIleThrGlyValSerGlnLeuTrpMetPheThrTyrSerC 33569 : TTGCTTTCACGTGCTTCTTGATTACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTT : 33628 331 : ysAspCysIleIleArgLysSerValAsnValAlaThrAlaAlaTyrGlyGlyProTrpP : 350 ||:!!||||||! !! !:!!|||:!!|||:!!||| !:!!!.!|||!.!||||||||| ysAsnCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpI 33629 : GCAATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGA : 33688 351 : roLeuLeuSerMetThrThrSerGlyArgMetIleArgLysAspLeuIleLeuValIleM : 370 ! !||| !!||| |||:::::::!!|||||||||||| !:!!:!!|||: leAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleL 33689 : TAAATTTACCAATggataaatttggaaaactgCTAAGAAAGGATTTACAAGTGCTCATCT : 33748 371 : etArgSerSerValProCysCysLeuThrGlyLysGlyPhePheMetValSerLeuGluT : 390 !!|||:!!!!! !|||! !..!||||||!.! ||||||||| :!!!!!||||||| euArgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleThrLeuGluT 33749 : TGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATAACTCTCGAAA : 33808 391 : hrTyrThrSer >>>> Target Intron 4 >>>> ValLeuSerThrAlaAlaSe : 400 ||!:!|||!.! 440 bp :!!:!!||||||:!! !|| hrPheThrLys++ ++IleMetSerThrSerMetSe 33809 : CCTTTACTAAGgt.........................agATCATGAGTACATCAATGTC : 34278 401 : rTyrPheThrLeuLeuLysGlnArgAlaGlu : 410 ||||||||||||||||||||||!!!|||||| rTyrPheThrLeuLeuLysGlnSerAlaGlu 34279 : GTATTTCACCCTACTAAAACAAAGTGCCGAG : 34310 vulgar: AfOr91_2 62 410 . KQ414828.1 31964 34310 + 682 M 82 246 S 0 2 5 0 2 I 0 166 3 0 2 S 1 1 M 42 126 G 0 3 M 19 57 S 0 2 5 0 2 I 0 288 3 0 2 S 1 1 M 19 57 G 3 0 M 72 216 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31965 34310 682 + . gene_id 4 ; sequence AfOr91_2 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 31965 32212 . + . KQ414828.1 exonerate:protein2genome:local exon 31965 32212 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32213 32214 . + . intron_id 1 ; splice_site "GC" KQ414828.1 exonerate:protein2genome:local intron 32213 32382 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32381 32382 . + . intron_id 0 ; splice_site "aa" KQ414828.1 exonerate:protein2genome:local cds 32383 32571 . + . KQ414828.1 exonerate:protein2genome:local exon 32383 32571 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32572 32573 . + . intron_id 2 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 32572 32863 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 32862 32863 . + . intron_id 1 ; splice_site "at" KQ414828.1 exonerate:protein2genome:local cds 32864 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32864 33137 . + . insertions 0 ; deletions 3 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 4 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34310 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34310 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31965 34310 682 + . alignment_id 4 ; Query AfOr91_2 ; Align 31965 63 246 ; Align 32384 146 126 ; Align 32513 188 57 ; Align 32865 208 57 ; Align 32922 230 216 ; Align 33544 302 276 ; Align 34260 394 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 567 Query range: 62 -> 303 Target range: 37029 -> 38207 63 : PheSerAlaCysLeuPheSerThrSerAsnIleLeuSerLeuThrMetProLeuLeuLys : 82 .....!!.!|||:!!!:!! !.!!.!!||| !|||:!!:!!..!:!! !:!!:!!||| LeuGlnValCysMetTyrMetAlaGlyAsnGlyLeuAlaMetValLeuAspIleIleLys 37030 : ctacaGGTTTGCATGTACATGGCAGGCAACGGTTTAGCCATGGTTTTGGATATAATCAAG : 37087 83 : IlePheIleLeuLeuThrHisLysLysAspPhePheHisLeuIleSerTyrMetGlnArg : 102 |||||| !|||:!!..!||||||||| ! |||.!! !||||||..!|||||||||!:! IlePheSerLeuValValHisLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLys 37088 : ATTTTCTCCCTAGTCGTACACAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAG : 37147 103 : AsnPheLeuHisGlyAsnTyrAspAspTyrGluArgGluValValPheGlyCysLysArg : 122 |||||||||||| !|||||||||.!.||||||!.!...|||:!! !...|||||| AsnPheLeuHisLeuAsnTyrAspGlnTyrGluAsnSerValIleAlaGlnAlaLysArg 37148 : AATTTCTTGCATTTGAACTACGATCAGTACGAGAATTCTGTTATCGCACAGGCGAAACGA : 37207 123 : LysCysThrPhePheIleCysPhePheThrPheLeuThrMetAlaThrValAlaSerTyr : 142 ! !|||! !!:!|||:!:||| ...:::|||...:::...::::!!||| !|||||| MetCysIleTyrPheValCysValLeuSerPhePheSerGlnSerSerValLeuSerTyr 37208 : ATGTGCATTTACTTCGTGTGcgttttgtcatttttttctcaatctTCAGTTCTTTCCTAT : 37267 143 : IlePheSerProLeuIle{G} >>>> Target Intron 1 >>>> {lu}AsnIle : 151 ||| ! !!!||||||:!!{.} 169 bp {.!}|||:!! IleValArgProLeuVal{S}++ ++{er}AsnLeu 37268 : ATAGTAAGGCCACTTGTA{T}gt.........................ag{ca}AATCTT : 37463 152 : GlyLysAsnGluSerSerArgMetLeuProPheAsnMetTrpValAsnLeuProLeuAsn : 171 |||||||||||||||..!||| ! ! !!:!:!!||||||:!!:!!|||||||||::! GlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuProLeuSer 37464 : GGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCATTATCC : 37523 172 : ValThrProTyrPheGluIleThrTyrThrLeuGlnValLeuSerLeu >>>> Targe : 188 :!!|||||||||:::||||||||||||! !:!!||||||||| !!:!! IleThrProTyrTyrGluIleThrTyrIleIleGlnValLeuProIle-+ 37524 : ATAACAccatattatgaaattacttACATAATACAGGTATTACCAATTtt.......... : 37576 189 : t Intron 2 >>>> AlaLeuSerLeuTyrHisIleGlyValSerTyrPheCysPheA : 202 295 bp |||||||||:!!|||!!.:!!.!!!.!!!!|||.!!||||||| ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheA 37577 : ...............agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttg : 37911 203 : spAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGlnPheGlnValLeuGlnHisA : 222 || ...... |||::: |||||||||||||||||||||!:::!!||||||:!!| spIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrA 37912 : atatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACA : 37971 223 : rgIleSerAsnIleIleAspSerMetAsnLysGluLysGluGluLysArgGluLysLeuT : 242 |||||:!!|||:!: ||| !..|||! !! !:!!!..!!!|||!!.! !! rgIleAlaAsnVal------SerGlyLeuSerGluIleValLysSerSerGluAsnProS 37972 : GAATTGCCAATGTG------TCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAA : 38025 243 : hrValAspSerSerTyrLeuAlaSerLysCysTyrAlaIlePheLysLysCysIleArgG : 262 :!..!|||..!! !||| :!!..!||||||||| !! ||||||!!.||||||!:!| erThrAspGluLeuTyr---SerGluLysCysTyrIleLysPheLysAsnCysIleGlnG 38026 : GCACAGATGAATTATAC---TCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAAC : 38082 263 : lnHisGlnAlaLeuIleAlaTyrCysArgLysLeuGluGlnValPheAsnLeuIleValL : 282 |||||||||||||||||! !!:!||| !! !||||||:!!||||||!..:!!|||!.!| lnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleAlaL 38083 : AGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCAC : 38142 283 : euGluGlnValLeuMetPheSerLeuLeuIleCysLeuAspGlyTyrGlnIleLeuLeuA : 302 ||! !||||||||||||||||||:!!|||||||||!!!! !! !|||||| !||||||! euGlyGlnValLeuMetPheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeuV 38143 : TCGGACAAGTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGG : 38202 303 : laAsn : 303 .!!:! alSer 38203 : TGAGT : 38207 vulgar: AfOr91_2 62 303 . KQ414828.1 37029 38207 + 567 M 86 258 S 0 1 5 0 2 I 0 165 3 0 2 S 1 2 M 38 114 5 0 2 I 0 291 3 0 2 M 39 117 G 2 0 M 19 57 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37030 38207 567 + . gene_id 5 ; sequence AfOr91_2 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37030 37288 . + . KQ414828.1 exonerate:protein2genome:local exon 37030 37288 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37289 37290 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37289 37457 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37456 37457 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 37458 37573 . + . KQ414828.1 exonerate:protein2genome:local exon 37458 37573 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37574 37575 . + . intron_id 2 ; splice_site "TT" KQ414828.1 exonerate:protein2genome:local intron 37574 37868 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 38207 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 38207 . + . insertions 0 ; deletions 3 KQ414828.1 exonerate:protein2genome:local similarity 37030 38207 567 + . alignment_id 5 ; Query AfOr91_2 ; Align 37030 63 258 ; Align 37460 150 114 ; Align 37869 188 117 ; Align 37986 229 57 ; Align 38043 249 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 394 Query range: 189 -> 410 Target range: 10837 -> 13155 190 : SerLeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIleMetAsn : 209 .!!|||||| !! !|||:!!!!!||||||||||||||||||.!!!!!|||||||||!:! GlyLeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSer 10838 : GGACTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGC : 10895 210 : LeuHisValAlaGlyGlnPheGlnValLeuGlnHisArgIleSerAsnIleIleAspSer : 229 :!!|||:!!::!|||||||||!:::!!||||||:!!|||:!:!!!!!.:!: !||| ! ValHisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspVal 10896 : GTGCATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTA : 10955 230 : MetAsnLysGluLysGluGluLysArgGluLysLeuThrValAspSerSerTyrLeuAla : 249 ... !!:!! !!..|||:::... |||...:!! !! !|||!!!!!! GlnTyrGlnIleSerGluLysAsnMetGluSerValLeuGluAspCysThr--------- 10956 : CAATATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACA--------- : 11009 250 : SerLysCysTyrAlaIlePheLysLysCysIleArgGlnHisGlnAlaLeuIleAlaTyr : 269 !!!:!! !|||! !! !||||||!..! !:!!||||||||||||.!!||||||! !||| ArgArgSerTyrGluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyr 11010 : CGTAGATCTTACGAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTAT : 11066 270 : CysArgLysLeuGluGlnValPheAsnLeuIleValLeuGluGlnValLeuMetPheSer : 289 ! !..!|||||||||!!.|||!:!!.. !|||:!!|||! !|||||||||:!!|||||| TyrGluLysLeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSer 11067 : TACGAGAAGCTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGT : 11126 290 : LeuLeuIleCysLeuAspGlyTyrGlnIleLeuLeuAlaAsn >>>> Target Intr : 304 :!!|||||||||||| !||||||||||||||||||!.!!:! 1299 bp ValLeuIleCysLeuPheGlyTyrGlnIleLeuLeuValSer-+ 11127 : GTGTTAATTTGCCTCTTTGGTTATCAGATATTATTGGTTAGTat................ : 11173 305 : on 1 >>>> GlyAspValLysThrArgLeuIlePheSerPheHisIleLeuGlyCysL : 320 !.!:!!..!... ! ! ! ! !! !||| .!!||| !||| ++AlaAsnThrSerLeuAlaArgArgSerIlePheMetPheLeuIleCysG 11174 : .........agGCTAATACTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGTG : 12518 321 : euCysGlnLeuLeuMetPheSerTyrSerCysAspCys<-><->IleIleArgLysSerV : 338 !..!..!:!!|||:!!|||! !!:!!!!! !..!||| :!:|||..!:!!|||! lyAlaMetValLeuLeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerA 12519 : GCGCCATGGTTTTATTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCG : 12578 339 : alAsnValAlaThrAlaAlaTyrGlyGlyProTrpProLeuLeuSerMetThrThrSerG : 358 !|||:!!||| !|||||||||..!!.!! !||| !! !:!! !!|||!.!! !!!!| spAsnIleAlaPheAlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrG 12579 : ATAATATTGCTTTTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTG : 12638 359 : lyArgMetIleArgLysAspLeuIleLeuValIleMetArgSerSerValProCysCysL : 378 ||!:!! !:!!||| ! |||||||||:!!|||||| !||||||!!! ! !||||||| lyLysLysLeuArgHisAspLeuIleMetValIleGlyArgSerArgArgValCysCysL 12639 : GCAAAAAGCTACGGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTC : 12698 379 : euThrGlyLysGlyPhePheMetValSerLeuGluThrTyrThr--{S} >>>> Targ : 393 |||||!.!!!.||||||||| |||||||||||||||||||||##{.} euThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThr##{G}++ 12699 : TGACTGCGAATGGATTTTTCCCTGTGTCCTTAGAAACTTATACTAC{G}gt......... : 12748 394 : et Intron 2 >>>> {er}ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuLy : 406 357 bp {.!}:::|||||||||||||||||||||||||||||||||!: +-{lu}IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuAr 12749 : ................ac{ag}attttgAGTACCGCGGCGTCGTACTTCACATTATTGAG : 13141 407 : sGlnArgAlaGlu : 410 !.!.!.!!.!||| gAsnAsnValGlu 13142 : AAATAACGTAGAA : 13155 vulgar: AfOr91_2 189 410 . KQ414828.1 10837 13155 + 394 M 57 171 G 3 0 M 54 162 5 0 2 I 0 1295 3 0 2 M 29 87 G 0 6 M 60 180 F 0 2 S 0 1 5 0 2 I 0 353 3 0 2 S 1 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10838 13155 394 + . gene_id 6 ; sequence AfOr91_2 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 10838 11170 . + . KQ414828.1 exonerate:protein2genome:local exon 10838 11170 . + . insertions 0 ; deletions 3 KQ414828.1 exonerate:protein2genome:local splice5 11171 11172 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 11171 12469 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12468 12469 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 12470 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12745 . + . insertions 6 ; deletions 0 ; frameshifts 2 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13102 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13101 13102 . + . intron_id 1 ; splice_site "ac" KQ414828.1 exonerate:protein2genome:local cds 13103 13155 . + . KQ414828.1 exonerate:protein2genome:local exon 13103 13155 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10838 13155 394 + . alignment_id 6 ; Query AfOr91_2 ; Align 10838 190 171 ; Align 11009 250 162 ; Align 12470 304 87 ; Align 12563 333 180 ; Align 13105 394 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 334 Query range: 62 -> 187 Target range: 26918 -> 27462 63 : PheSerAlaCysLeuPheSerThrSerAsnIleLeuSerLeuThrMetProLeuLeuLys : 82 .....!!.!|||:!!!:!! !.!!.!!||| !|||:!!:!!..!:!! !:!!:!!||| LeuGlnValCysMetTyrMetAlaGlyAsnGlyLeuAlaMetValLeuAspIleIleLys 26919 : ctacaGGTTTGCATGTACATGGCTGGCAACGGTTTAGCCATGGTTTTGGATATAATCAAG : 26976 83 : IlePheIleLeuLeuThrHisLysLysAspPhePheHisLeuIleSerTyrMetGlnArg : 102 ||||||! !|||:!!..!||||||||| ! |||.!! !||||||..!|||||||||!:! IlePheThrLeuValValHisLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLys 26977 : ATTTTCACCCTAGTCGTACACAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAG : 27036 103 : AsnPheLeuHisGlyAsnTyrAspAspTyrGluArgGluValValPheGlyCysLysArg : 122 ||||||! !||| !|||||||||.!.||||||!.!...|||:!! !...|||||| AsnPheTrpHisLeuAsnTyrAspGlnTyrGluAsnSerValLeuAlaGlnAlaLysArg 27037 : AATTTTTGGCATTTGAACTACGATCAGTACGAGAATTCTGTTTTGGCACAGGCGAAACGA : 27096 123 : LysCysThrPhePheIleCysPhePheThrPheLeuThrMetAlaThrValAlaSerTyr : 142 ! !|||! !!:!|||:!:||| ...:::|||...:::...::::!!||| !|||||| MetCysIleTyrPheValCysValLeuSerPhePheSerGlnSerSerValLeuSerTyr 27097 : ATGTGCATTTACTTCGTGTGcgttttgtcatttttttctcaatctTCAGTTCTTTCCTAT : 27156 143 : IlePheSerProLeuIle{G} >>>> Target Intron 1 >>>> {lu}AsnIle : 151 |||.!.!!!||||||:!!{.} 169 bp {.!}|||:!! IleIleArgProLeuVal{S}++ ++{er}AsnLeu 27157 : ATCATAAGGCCACTTGTA{T}gt.........................ag{ca}AATCTT : 27352 152 : GlyLysAsnGluSerSerArgMetLeuProPheAsnMetTrpValAsnLeuProLeuAsn : 171 |||||||||||||||..!||| ! ! !|||:!!|||||| !!:!!|||||||||::! GlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPheAspLeuProLeuSer 27353 : GGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTCGATCTACCATTATCC : 27412 172 : ValThrProTyrPheGluIleThrTyrThrLeuGlnValLeuSerLeu : 187 ||||||||||||:::||||||||||||! !:!!||||||||| !!:!! ValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuProIle 27413 : GTAACAccatattatgaaattacttACATAATACAGGTATTACCAATT : 27462 vulgar: AfOr91_2 62 187 . KQ414828.1 26918 27462 + 334 M 86 258 S 0 1 5 0 2 I 0 165 3 0 2 S 1 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26919 27462 334 + . gene_id 7 ; sequence AfOr91_2 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 26919 27177 . + . KQ414828.1 exonerate:protein2genome:local exon 26919 27177 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 27178 27179 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 27178 27346 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 27345 27346 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 27347 27462 . + . KQ414828.1 exonerate:protein2genome:local exon 27347 27462 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 26919 27462 334 + . alignment_id 7 ; Query AfOr91_2 ; Align 26919 63 258 ; Align 27349 150 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 244 Query range: 319 -> 410 Target range: 28559 -> 29242 320 : LeuCysGlnLeuLeuMetPheSerTyrSerCysAspCysIleIleArgLysSerValAsn : 339 :!! !!||||||! !||||||!!!||||||||||||||||||! !! !:!!|||:!!||| ValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsn 28560 : GTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAAC : 28617 340 : ValAlaThrAlaAlaTyrGlyGlyProTrpProLeuLeuSerMetThrThrSerGlyArg : 359 :!!||| !:!!!.!|||!.!||||||||| ! !||| !!||| |||::: IleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLys 28618 : ATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaa : 28677 360 : MetIleArgLysAspLeuIleLeuValIleMetArgSerSerValProCysCysLeuThr : 379 ::::!!|||||||||||| !:!!:!!|||:!!|||:!!!!! !|||! !! !|||||| LeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThr 28678 : ctgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACT : 28737 380 : GlyLysGlyPhePheMetValSerLeuGluThrTyrThrSer >>>> Target Intr : 394 !.! ||||||||| :!!||||||||||||!:!|||!.! 410 bp AlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 28738 : GCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt................ : 28784 395 : on 1 >>>> ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuLysGlnArgAlaG : 410 :!!:!!||||||:!! !|||||||||||||||||||||||| !! !| ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnCysIleG 28785 : .........agATCATGAGTACATCAATGTCGTATTTCACATTATTAAAACAATGTATCG : 29240 411 : lu : 410 || lu 29241 : AG : 29242 vulgar: AfOr91_2 319 410 . KQ414828.1 28559 29242 + 244 M 74 222 5 0 2 I 0 406 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28560 29242 244 + . gene_id 8 ; sequence AfOr91_2 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 28560 28781 . + . KQ414828.1 exonerate:protein2genome:local exon 28560 28781 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 28782 28783 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 28782 29191 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 29190 29191 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 29192 29242 . + . KQ414828.1 exonerate:protein2genome:local exon 29192 29242 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28560 29242 244 + . alignment_id 8 ; Query AfOr91_2 ; Align 28560 320 222 ; Align 29192 394 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 313 -> 394 Target range: 38517 -> 38760 314 : PheHisIleLeuGlyCysLeuCysGlnLeuLeuMetPheSerTyrSerCysAspCysIle : 333 ||| ! :!! ! !!:!! !!||||||! !||||||!!!|||||||||||||||||| PheAlaThrMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIle 38518 : TTCGCAACGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATA : 38575 334 : IleArgLysSerValAsnValAlaThrAlaAlaTyrGlyGlyProTrpProLeuLeuSer : 353 ! !! !:!!|||:!!|||:!!||| !:!!!.!|||!.!||||||||| ! !||| !! ThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuPro 38576 : ACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCA : 38635 354 : MetThrThrSerGlyArgMetIleArgLysAspLeuIleLeuValIleMetArgSerSer : 373 ||| |||:::::::!!|||||||||||| !:!!:!!|||:!!|||:!!!!! MetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArg 38636 : ATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGA : 38695 374 : ValProCysCysLeuThrGlyLysGlyPhePheMetValSerLeuGluThrTyrThrSer : 393 !|||! !! !||||||!.! ||||||||| :!!||||||||||||!:!|||!.! ArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys 38696 : CGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAG : 38755 394 : Val : 394 ||| Val 38756 : GTA : 38760 vulgar: AfOr91_2 313 394 . KQ414828.1 38517 38760 + 204 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38518 38760 204 + . gene_id 9 ; sequence AfOr91_2 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38518 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38518 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38518 38760 204 + . alignment_id 9 ; Query AfOr91_2 ; Align 38518 314 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 0 -> 69 Target range: 709 -> 916 1 : MetSerPheLeuGluSerAspIleSerValAsnLeuThrSerIlePheMetLysIleIleGlyL : 22 |||!!!! !.!.!!!||||||:!!|||!.!:!!|||:!!.!!!:!:!!||||||||||||! MetThrSerAsnAsnArgAspIleAlaValThrValThrAlaPheTyrLeuLysIleIleGlyP 710 : ATGACTTCGAATAACAGGGACATAGCGGTGACCGTTACGGCTTTCTACTTGAAAATTATCGGCT : 773 23 : euTrpMetAlaThrAsnArgHisGluLysArgIleArgAsnIleThrIleIleTyrSerLeuIl : 43 !!|||:!:||| !!.! !.!.||||||||| |||......... ! !!:!!!!:!!.! heTrpLeuAlaAspThrTyrGluGluLysArgArgArgLysPheAlaGlnAsnPheThrIlePh 774 : TCTGGTTAGCTGACACTTACGAGGAGAAacgtcgaagaaaattcgcgcAGAATTTCACGATATT : 836 44 : eAlaIleLeuPheAlaLeuTrpIleGlnSerMetAsnIleTyrTyrSerTrpGlyAspPheSer : 64 ! !:!::!!! !|||:!! |||:!!!!!! !:!!|||||||||!!!||||||||||||||| eMetLeuValCysAlaValValIleGluThrArgAspIleTyrTyrThrTrpGlyAspPheSer 837 : TATGCTGGTGTGCGCTGTGGTAATTGAGACGAGGGATATCTATTACACCTGGGGTGATTTCAGC : 899 65 : AlaCysLeuPheSer : 69 !.! !!:!! !!||| ValSerIleValSer 900 : GTAAGTATAGTTTCA : 916 vulgar: AfOr91_2 0 69 . KQ414828.1 709 916 + 142 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 710 916 142 + . gene_id 10 ; sequence AfOr91_2 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 710 916 . + . KQ414828.1 exonerate:protein2genome:local exon 710 916 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 710 916 142 + . alignment_id 10 ; Query AfOr91_2 ; Align 710 1 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 4 -> 60 Target range: 7905 -> 8073 5 : GluSerAspIleSerValAsnLeuThrSerIlePheMetLysIleIleGlyLeuTrpMetAl : 25 !!:||||||||||||:!!||||||:!!!.!.!!|||:!!:::! !:!!|||||||||! !|| AspSerAspIleSerIleAsnLeuSerLysPhePheLeuArgAsnValGlyLeuTrpArgAl 7906 : GATTCGGACATATCGATCAACTTGTCGAAATTCTTCTTGCGCAATGTCGGCCTGTGGAGGGC : 7966 26 : aThrAsnArgHisGluLysArgIleArgAsnIleThrIleIleTyrSerLeuIleAlaIleL : 46 | !|||!.! |||!!.|||! !|||!!. !:!! !|||!!!:!! !!!:! aGluAsnHisAlaGluAsnArgLysArgLysAlaLeuValAlaTyrThrIleTrpAsnMetP 7967 : TGAGAATCACGCGGAGAATCGTAAAAGGAAAGCGTTGGTCGCCTACACGATTTGGAACATGT : 8029 47 : euPheAlaLeuTrpIleGlnSerMetAsnIleTyrTyrSerTrp : 60 !!!!.|||:!! !:!!:!!!!!! :!!!!:|||!:!!!!||| heLeuAlaIleValValGluThrArgAspMetTyrPheThrTrp 8030 : TTTTGGCCATAGTGGTTGAAACGAGAGATATGTATTTCACCTGG : 8073 vulgar: AfOr91_2 4 60 . KQ414828.1 7905 8073 + 121 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 7906 8073 121 + . gene_id 11 ; sequence AfOr91_2 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 7906 8073 . + . KQ414828.1 exonerate:protein2genome:local exon 7906 8073 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 7906 8073 121 + . alignment_id 11 ; Query AfOr91_2 ; Align 7906 5 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_1 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1389 Query range: 1 -> 411 Target range: 15106 -> 19921 2 : GlyPheLeuGluSerAspIleSerValArgLeuThrSerIlePheMetLysLeuValGly : 21 .!!||| ! ..!|||||||||:!!!!!|||||||||:!!|||||||||:!!|||||| SerPheThrThrAspAspIleSerIleSerLeuThrSerValPheMetLysIleValGly 15107 : AGTTTCACCACCGATGACATATCAATCAGCCTGACGTCCGTTTTCATGAAGATCGTTGGA : 15164 22 : LeuTrpMetAlaAlaAsnGlnTyrGluGlnArgMetArgAsnAlaMetIleThrTyrAsn : 41 ||||||||||||:!!|||!::!:!|||||||||:!:|||||| !! !:!: !|||!.. LeuTrpMetAlaSerAsnArgPheGluGlnArgValArgAsnIleThrLeuCysTyrThr 15165 : CTGTGGATGGCGTCGAACCGTTTCGAGCAACGAGTACGAAATATCACGCTGTGTTACACG : 15224 42 : ValValAlaIleLeuPheAlaLeuTrpIleGlnThrMetAspIleTyrTyrSerTrpGly : 61 :!!:!!|||||||||||||||||||||||||||! !! !|||:!:||||||||||||||| LeuIleAlaIleLeuPheAlaLeuTrpIleGlnMetThrAspLeuTyrTyrSerTrpGly 15225 : CTGATCGCGATTCTCTTCGCCCTGTGGATACAAATGACGGATTTGTATTACTCGTGGGGA : 15284 62 : AsnLeuSer >>>> Target Intron 1 >>>> AlaCysIlePheSerThrSerA : 72 :!!!!!.!! 891 bp ||||||:!!!:!!!!.!!!!!| AspPheGly++ ++AlaCysLeuTyrThrAlaCysA 15285 : GATTTTGGTgt.........................agGCCTGTTTATATACTGCATGCA : 16208 73 : snThrLeuSerLeuIleLeuProLeuLeuLysIlePheIleLeuLeuSerHisLysGluG : 92 ||! !|||||||||! !:!!|||!!!|||||||||.!!:!!||||||:!!||||||...: snIleLeuSerLeuThrIleProPheLeuLysIleLeuValLeuLeuAlaHisLysAsnA 16209 : ACATTTTATCGTTAACAATACCGTTTCTCAAGATACTCGTCTTGCTTGCAcacaaaaatg : 16268 93 : luPhePheArgLeuIleValTyrMetGlnArgAsnPheLeuArgGlyAsnTyrAspAspT : 112 ::||||||...||||||:!!:!!:!:||||||.!.||||||!.!!.!:!!|||||||||| spPhePheHisLeuIleLeuHisLeuGlnArgGluPheLeuHisAlaAspTyrAspAspT 16269 : atttttttcatttgattcTGCACCTACAACGAGAATTCTTGCATGCAGATTACGACGACT : 16328 113 : yrGluArgGluValValPheGlyCysLysArgLysCysThrPhePheIleCysPhePheT : 132 |||||!:!:!!:!!:!!.!!||||||:!!|||:!!||||||||||||:!!|||||||||| yrGluLysLysIleLeuLeuGlyCysGlnArgGlnCysThrPhePheValCysPhePheT 16329 : ACGAGAAAAAGATTTTGCTCGGTTGCCAACGTCAATGTACCTTCTTCGTTTGTTTCTTCA : 16388 133 : hrPhePheThrMetAlaThrIleValSerTyrIleAlaSerProIleVal{G} >>>> : 149 ||.!!||||||! !.!|||:!!:!!|||||||||!.!!:!|||:!!:!!{!} hrLeuPheThrLysGlyThrValIleSerTyrIleValAsnProLeuIle{V}++ 16389 : CACTTTTCACTAAAGGAACTGTTATCTCGTACATCGTTAATCCGCTTATT{G}gt..... : 16442 150 : Target Intron 2 >>>> {ly}LeuAlaAsnIleGlyLysAsnGluSerAspArgV : 161 1380 bp { !}|||||||||||||||||||||||||||!!:|||: --{al}LeuAlaAsnIleGlyLysAsnGluSerGluArgI 16443 : ....................ca{TT}TTagcaaatattggaaaaaatgagTCAGAGAGGA : 17855 162 : alLeuProPheAsnMetTrpValAsnLeuProLeuSerMetThrProTyrPheGluIleT : 181 !!||||||||||||||||||||||||||||||||||||||||||||||||!:!||||||| leLeuProPheAsnMetTrpValAsnLeuProLeuSerMetThrProTyrTyrGluIleT 17856 : TACTTCCATTTAATATGTGGGTCAACTTGCCATTATCAATGACGCCATATTACgaaataa : 17915 182 : hrPheThrLeuGln >>>> Target Intron 3 >>>> ThrLeuSerLeuTyrGl : 191 |||||:::|||||| 110 bp ..!||||||||||||!! hrPheSerLeuGln++ ++ValLeuSerLeuTyrHi 17916 : ctttttcattaCAGgt.........................aggtTCTGTCTCTGTACCA : 18055 192 : nIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAl : 211 .||||||||||||||||||||||||||||||||||||||||||||||||||||||!.!|| sIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisAlaAl 18056 : TATTGGCGTGAGTTATTTCTgcttcgacaattttttatgcatCATGAACTTGCACGCGGC : 18115 212 : aGlyGlnPheLysValLeuGlnTyrArgIleSerAsnIleAlaAspLeuIleIleLysTh : 231 | !||||||::!|||||||||||||||!!::!!|||!!:.!!||||||! ||| aThrGlnPheArgValLeuGlnTyrArgMetAlaAsnMetThrAspLeuLysAspLysGl 18116 : TACTCAGTTTCGAGTATTGCAATACCGAATGGCGAATATGACCGATTTAAAGGacaaaga : 18175 232 : rGluGluLysArgGlu<->LysLeuIleValAspSerSerTyrPheSerSerLysCysTy : 250 ...::::::|||... ||| !! !|||..!|||:!!! !|||:!!!!!:!!||||| uArgLysGluArgAsnMetLysThrSerValSerSerAlaCysPheAlaThrGluCysTy 18176 : gaggaaagagagaaatatgaAGACAAGTGTGAGTTCGGCGTGCTTTGCAACAGAATGTTA : 18235 251 : rThrThrPheLysLysCysIleArgGlnHisGlnThrLeuIleThrTyrCysArgLysLe : 270 |!.!..!.!!||| ! ! !|||||||||||||||!.!||||||.!!||||||!.!||||| rAsnValLeuLysAspTyrIleArgGlnHisGlnAsnLeuIleAlaTyrCysAsnLysLe 18236 : CAACGTTCTCAAAGATTATATCAGACAGCATCAGAACCTGATTGCTTATTGCAACAAACT : 18295 271 : uGluAlaValPheAsnLeuIleValLeuGluGlnValLeuMetPheSerLeuLeuIleCy : 290 |||| !|||||||||:!!|||||||||! !|||:!!||||||||||||:!!|||||||| uGluLysValPheAsnIleIleValLeuGlyGlnLeuLeuMetPheSerMetLeuIleCy 18296 : CGAGAAAGTGTTCAATATCATTGTTCTGGGGCAATTGTTAATGTTCAGCATGTTGATCTG : 18355 291 : sLeuAspGlyTyrGlnIleLeuMet >>>> Target Intron 4 >>>> AlaAsp : 300 ||||||||||!:!|||||||||||| 975 bp |||:!! sLeuAspGlyPheGlnIleLeuMet++ ++AlaAsn 18356 : TCTCGATGGATTTCAGATACTTATGgt.........................agGCAAAT : 19360 301 : GlyAspIleLysThrArgLeuIlePheSerLeuHisValLeuAlaCysLeuCysGlnLeu : 320 ! !! !!:!|||||||||||||||! !!!!|||:!! !||||||:!!||||||||| ThrProThrArgThrArgLeuIlePheIlePheHisIleGlyAlaCysMetCysGlnLeu 19361 : ACACCTACCAGAACCCGACTGATTTTCATCTTTCACATAGGAGCATGCATGTGTCAATTG : 19420 321 : LeuMetPheSerTyrSerCysAspCysIleIleArgGluSerValAsnValAlaThrAla : 340 |||||||||!!!||||||||||||||||||||||||||||||..!!:!..!||| !||| LeuMetPheThrTyrSerCysAspCysIleIleArgGluSerThrSerThrAlaGluAla 19421 : CTGATGTTTACCTACAGCTGCGACTGCATCATAAGAGAAAGCACGAGCACCGCCGAGGCG : 19480 341 : AlaTyrGlyGlyProTrpThrLeuLeuProMetThrThrAsnGlyLysMetMetArgLys : 360 !.!|||.!!||||||||||||||||||||||||!:!.!!:!!|||||||||!!:|||||| ValTyrSerGlyProTrpThrLeuLeuProMetSerAlaAspGlyLysMetIleArgLys 19481 : GTGTACAGCGGTCCCTGGACACTTTTACCAATGAGCGCAGACGGAAAAATGATAAGGAAA : 19540 361 : AspLeuIleValValIleMetArgSerSerIleProCysCysLeuThrGlyLys<->Phe : 379 ||||||!!::!!||||||||||||||||||:!!|||||||||||||||!.!!:! ||| AspLeuMetLeuValIleMetArgSerSerValProCysCysLeuThrAlaArgGlyPhe 19541 : GATTTGATGCTCGTTATCATGAGATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTC : 19600 380 : PheIleValSerLeuGluThrTyrThrSer >>>> Target Intron 5 >>>> V : 390 |||:!!|||||||||||||||||||||.!! 223 bp | PheValValSerLeuGluThrTyrThrGly++ ++V 19601 : TTCGTCGTGTCTTTAGAAACGTACACAGGGgt.........................agG : 19856 391 : alLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnIleGlySerAlaAspG : 410 |||||||||||||||||||||||||||||||||||!:!.!.!.. !! !!:!||||||. alLeuSerThrAlaAlaSerTyrPheThrLeuLeuLysGlnArgSerGluAsnAlaAspS 19857 : TTTTAAGCACCGCAGCCTCATACTTTACGTTGCTGAAGCAAAGATCAGAGAATGCCGACA : 19916 411 : luThr : 411 ..:!! erSer 19917 : GTTCG : 19921 vulgar: AfOr91_1 1 411 . KQ414828.1 15106 19921 + 1389 M 63 189 5 0 2 I 0 887 3 0 2 M 84 252 S 0 1 5 0 2 I 0 1376 3 0 2 S 1 2 M 36 108 5 0 2 I 0 106 3 0 2 M 51 153 G 0 3 M 62 186 5 0 2 I 0 971 3 0 2 M 80 240 G 0 3 M 11 33 5 0 2 I 0 219 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15107 19921 1389 + . gene_id 1 ; sequence AfOr91_1 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 15107 15295 . + . KQ414828.1 exonerate:protein2genome:local exon 15107 15295 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 15296 15297 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 15296 16186 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 16185 16186 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 16187 16439 . + . KQ414828.1 exonerate:protein2genome:local exon 16187 16439 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 16440 16441 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 16440 17819 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 17818 17819 . + . intron_id 1 ; splice_site "CA" KQ414828.1 exonerate:protein2genome:local cds 17820 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17820 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 2 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18381 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19921 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19921 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15107 19921 1389 + . alignment_id 1 ; Query AfOr91_1 ; Align 15107 2 189 ; Align 16187 65 252 ; Align 17822 150 108 ; Align 18040 186 153 ; Align 18196 237 186 ; Align 19357 299 240 ; Align 19600 379 33 ; Align 19856 390 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_1 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 872 Query range: 4 -> 404 Target range: 31120 -> 34304 5 : GluSerAspIleSerValArgLeuThrSerIlePheMetLysLeuValGlyLeuTrpMet : 24 .....!|||:!!||| !!||||||.!!!:!.!!|||:!! ! :!!||||||!!!|||.!. ArgGlnAspValSerPheArgLeuAlaAsnPhePheLeuTyrValValGlyPheTrpPhe 31121 : CGTCAAGACGTTTCCTTTAGATTAGCCAACTTTTTTCTGTATGTTGTCGGCTTCTGGTTC : 31178 25 : AlaAlaAsnGlnTyrGluGlnArgMetArgAsnAlaMetIleThrTyrAsnValValAla : 44 |||||||||!:: |||:!! !!.!.||||||||| !||| !|||!.!:!!|||.!! AlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeuTyrThrIleValThr 31179 : GCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCTGCGATTCTGTATACCATTGTCACG : 31238 45 : IleLeuPheAlaLeuTrpIleGlnThrMetAspIleTyrTyrSerTrpGlyAsnLeuSer : 64 :!!!!!|||!.!:!!|||:!!||| !! ! :!!|||!:!||||||||||||!!!..! ValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSerTrpGlyAsnPheGlu 31239 : GTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGGCTTTATTTCTCCTGGGGAAACTTTGAA : 31298 65 : >>>> Target Intron 1 >>>> AlaCysIlePheSerThrSerAsnThrLeuS : 75 670 bp !.!|||!!:!:!! !.!!!!!|||!:!:!!: ++ ++ValCysMetTyrMetAlaCysAsnSerIleA 31299 : gt.........................agGTTTGCATGTACATGGCATGCAACAGTATAG : 32001 76 : erLeuIleLeuProLeuLeuLysIlePheIleLeuLeuSerHisLysGluGluPhePheA : 95 !!|||:!!||| !:!!:!!|||||||||:!!|||:!! !!..|||:!!:!!|||.!! laLeuValLeuAspIleIleLysIlePheValLeuValValArgLysLysLysPheLeuG 32002 : CCCTGGTTTTGGATATAATCAAGATTTTCGTCCTAGTCGTACGGAAGAAAAAGTTTCTCG : 32061 96 : rgLeuIleValTyrMetGlnArgAsnPheLeuArgGlyAsnTyrAspAspTyrGluArgG : 115 !!||||||! !|||||||||:::||||||...... |||||||||.!. !!|||!.!. lyLeuIleGluTyrMetGlnLysAsnPhePheHisLeuAsnTyrAspGlnAspGluAsnS 32062 : GTCTGATTGAGTACATgcagaagaatttctttcatttgaaCTACGATCAGGACGAGAATT : 32121 116 : luValValPheGlyCysLysArgLysCysThrPhePheIleCysPhePheThrPhePheT : 135 ..:!!:!! !...||||||! !|||! !!:!|||:!!||| !!|||:!!|||! !: erIleIleAlaHisAlaLysArgThrCysIleTyrPheValCysValPheSerPheCysS 32122 : CTATTATCGCACACGCGAAACGAACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTT : 32181 136 : hrMetAlaThrIleValSerTyrIleAlaSer{Pr} >>>> Target Intron 2 > : 146 !!...:!!|||:!! !!||||||||| !!!!{||} 164 bp erGlnSerThrValPheSerTyrIleIleArg{Pr}-+ 32182 : CTCAATCTACAGTTTTTTCCTATATAATAAGG{CC}at...................... : 32218 147 : >>> {o}IleValGlyLeuAlaAsnIleGlyLysAsnGluSerAspArgValLeuProP : 164 {|} |||||||||:!!|||||||||||||||||||||! !! ! !! -+{o}AsnPheIleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleT 32219 : ...gg{g}aattttattttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATAT : 32432 165 : heAsnMetTrpValAsnLeuProLeuSerMetThrProTyrPheGluIleThrPheThrL : 184 :!:!!||||||:!!:!!||||||||||||:!:|||||||||:::|||||||||::!! !: yrAspMetTrpLeuAspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleI 32433 : ACGATATGTGGCTCGATCTACCATTATCCGTAACAccatattatgaaattacttACATAA : 32492 185 : euGlnThrLeuSerLeuTyrGlnIleGly{V} >>>> Target Intron 3 >>>> : 194 !!|||..!||| !!:!!!:!..!! {:} 307 bp leGlnValLeuProIlePheSerArgGln{M}-+ + 32493 : TACAGGTATTACCAATTTTCTCAAGGCaa{a}ct.........................a : 32828 195 : {al}SerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyG : 213 {!!}!!!|||.!!||||||||||||...... |||||| !|||||||||||||||| +{et}CysTyrLeuCysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyG 32829 : g{TG}TGTTACCTTTGCTttgataacatttttttcattatgtgTCTACACGTGGCTGGTC : 32886 214 : lnPheLysValLeuGlnTyrArgIleSerAsnIleAlaAspLeuIleIleLysThrGluG : 233 |||||::::!!|||||||||||||||:!!|||:!::!!! !||| !.. ! !! lnPheArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeu------SerGluIleV 32887 : AGTTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTA------AGCGAGATAG : 32940 234 : luLysArgGluLysLeuIleValAspSerSerTyrPheSerSerLysCysTyrThrThrP : 253 !|||!!!.!. ! !! ! ! :!!..!! !:!|||..!|||||||||! !! !| alLysSerAsnAspAsnThrSerThrAlaGluLeuTyrSerGluLysCysTyrIleLysP 32941 : TGAAGAGCAATGATAATACAAGCACGGCTGAATTATACTCAGAGAAATGTTACATCAAGT : 33000 254 : heLysLysCysIleArgGlnHisGlnThrLeuIleThrTyrCysArgLysLeuGluAlaV : 273 |||||!!.||||||!:!|||||||||.!!|||||| :::|||... ||||||! !| heLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysGluIleLeuGluGluV 33001 : TTAAGAATTGCATTCAACAACATCAGGCACTaattgaattttgtgaaatactCGAAGAGG : 33060 274 : alPheAsnLeuIleValLeuGluGlnValLeuMetPheSerLeuLeuIleCysLeuAspG : 293 |||||!..:!!|||||||||! !||||||||||||||||||:!!:!!||||||!!!! !| alPheThrValIleValLeuGlyGlnValLeuMetPheSerIleIleIleCysPheAlaG 33061 : TATTCACGGTAATCGTACTCGGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCG : 33120 294 : lyTyrGlnIleLeuMet >>>> Target Intron 4 >>>> AlaAspGlyAspIl : 303 |||||:!!:!!|||:!! 406 bp ! ! .! lyTyrGluValLeuLeu++ ++IleThrLeuProPh 33121 : GGTATGAAGTACTCCTGgt.........................agATAACGTTACCATT : 33556 304 : eLysThrArgLeuIlePheSerLeuHisValLeuAlaCysLeuCysGlnLeuLeuMetPh : 323 !:!!:!!|||:!! !|||!!!! ! !:!!:!!.!! !!:!! !!||||||! !||||| eGluSerArgValAlaPheThrCysPheLeuIleThrGlyValSerGlnLeuTrpMetPh 33557 : TGAATCGCGCGTTGCTTTCACGTGCTTCTTGATTACGGGCGTGAGTCAACTATGGATGTT : 33616 324 : eSerTyrSerCysAspCysIleIleArgGluSerValAsnValAlaThrAlaAlaTyrGl : 343 |!!!|||||||||:!!||||||! !! !||||||:!!|||:!!||| !:!!!.!|||!. eThrTyrSerCysAsnCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAl 33617 : CACGTACAGTTGCAATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGC : 33676 344 : yGlyProTrpThrLeuLeuProMetThrThrAsnGlyLysMetMetArgLysAspLeuIl : 363 !|||||||||! ! !||||||||| ||||||::::!:|||||||||||| aGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGl 33677 : TGGACCATGGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAGGATTTACA : 33736 364 : eValValIleMetArgSerSerIleProCysCysLeuThrGly<->LysPhePheIleVa : 382 !|||:!!|||:!!|||:!!!!! !|||! !..!||||||!.! !|||||| !:! nValLeuIleLeuArgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIl 33737 : AGTGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTAT : 33796 383 : lSerLeuGluThrTyrThrSer >>>> Target Intron 5 >>>> ValLeuSer : 392 !!!!|||||||||!:!|||!.! 440 bp :!!:!!||| eThrLeuGluThrPheThrLys++ ++IleMetSer 33797 : AACTCTCGAAACCTTTACTAAGgt.........................agATCATGAGT : 34266 393 : ThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsn : 404 |||:!! !||||||||||||||||||!:!.!.!:! ThrSerMetSerTyrPheThrLeuLeuLysGlnSer 34267 : ACATCAATGTCGTATTTCACCCTACTAAAACAAAGT : 34304 vulgar: AfOr91_1 4 404 . KQ414828.1 31120 34304 + 872 M 60 180 5 0 2 I 0 666 3 0 2 M 81 243 S 0 2 5 0 2 I 0 160 3 0 2 S 1 1 M 47 141 S 0 1 5 0 2 I 0 303 3 0 2 S 1 2 M 33 99 G 2 0 M 69 207 5 0 2 I 0 402 3 0 2 M 79 237 G 0 3 M 12 36 5 0 2 I 0 436 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31121 34304 872 + . gene_id 2 ; sequence AfOr91_1 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 31121 31300 . + . KQ414828.1 exonerate:protein2genome:local exon 31121 31300 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 31301 31302 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 31301 31970 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 31969 31970 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 31971 32215 . + . KQ414828.1 exonerate:protein2genome:local exon 31971 32215 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32216 32217 . + . intron_id 2 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 32216 32379 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 32378 32379 . + . intron_id 1 ; splice_site "gg" KQ414828.1 exonerate:protein2genome:local cds 32380 32522 . + . KQ414828.1 exonerate:protein2genome:local exon 32380 32522 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32523 32524 . + . intron_id 3 ; splice_site "ct" KQ414828.1 exonerate:protein2genome:local intron 32523 32829 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 32828 32829 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32830 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32830 33137 . + . insertions 0 ; deletions 2 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 5 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34304 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34304 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31121 34304 872 + . alignment_id 2 ; Query AfOr91_1 ; Align 31121 5 180 ; Align 31971 65 243 ; Align 32381 147 141 ; Align 32832 195 99 ; Align 32931 230 207 ; Align 33544 299 237 ; Align 33784 378 36 ; Align 34260 390 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_1 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 836 Query range: 4 -> 405 Target range: 7905 -> 13152 5 : GluSerAspIleSerValArgLeuThrSerIlePheMetLysLeuValGlyLeuTrpMet : 24 !!:||||||||||||:!!!.!|||:!!!.!.!!|||:!!::: !||||||||||||! ! AspSerAspIleSerIleAsnLeuSerLysPhePheLeuArgAsnValGlyLeuTrpArg 7906 : GATTCGGACATATCGATCAACTTGTCGAAATTCTTCTTGCGCAATGTCGGCCTGTGGAGG : 7963 25 : AlaAlaAsnGlnTyrGluGlnArgMetArgAsnAlaMetIleThrTyrAsnValValAla : 44 |||! !|||!!. |||.!.|||! |||!!.|||:!!:!!.!!|||!..:!! ! ! AlaGluAsnHisAlaGluAsnArgLysArgLysAlaLeuValAlaTyrThrIleTrpAsn 7964 : GCTGAGAATCACGCGGAGAATCGTAAAAGGAAAGCGTTGGTCGCCTACACGATTTGGAAC : 8023 45 : IleLeuPheAlaLeuTrpIleGlnThrMetAspIleTyrTyrSerTrpGlyAsnLeuSer : 64 !!:!!!!!.|||:!! !:!!:!!|||! |||!!:|||!:!!!!||| ! !! !.!! MetPheLeuAlaIleValValGluThrArgAspMetTyrPheThrTrpPheTyrLysGly 8024 : ATGTTTTTGGCCATAGTGGTTGAAACGAGAGATATGTATTTCACCTGGTTCTATAAAGGC : 8083 65 : >>>> Target Intron 1 >>>> AlaCysIlePheSerThrSerAsnThrLeuS : 75 796 bp ! ! !:!!!:! !!:!!!!||| !|||| ++ ++AspIleLeuTyrValSerThrAsnLeuLeuS 8084 : gt.........................agGATATTCTTTACGTTAGTACCAACTTACTGA : 8912 76 : erLeuIleLeuProLeuLeuLysIlePheIleLeuLeuSerHisLysGluGluPhePheA : 95 ||:!!|||||| !! !:!!|||:!! !:!!:!!|||! !||||||! !||||||.!.! erValIleLeuThrThrIleLysLeuThrValValLeuIleHisLysValGluPheMetS 8913 : GCGTGATCTTAACTACGATCAAGCTAACTGTCGTACTAATACACAAAGTGGAATTCATGA : 8972 96 : rgLeuIleValTyrMetGlnArgAsnPheLeuArgGlyAsnTyrAspAspTyrGluArgG : 115 !!||||||! !|||||| ! ..!:!!|||! !!.!! !:!!|||||| !:!!|||!:!. erLeuIleAspTyrMetTyrGluHisPheTrpAsnValAspTyrAspLeuHisGluLysA 8973 : GTCTGATTGATTACATGTACGAACATTTCTGGAACGTGGATTACGATCTTCACGAGAAAA : 9032 116 : luValValPheGlyCysLysArgLysCysThrPhePheIleCysPhePheThrPhePheT : 135 .!:!!:!: ...||||||::: |||! !.!!|||! !! ! !!||| !.!! rgIleMetAspAsnCysLysLysThrCysIleIlePheThrSerSerValThrThrIleG 9033 : GAATTATggataattgtaaaaaaactTGCATCATCTTCACTTCAAGCGTCACTACCATTG : 9092 136 : hrMetAlaThrIleValSerTyrIleAlaSerProIleVal{G} >>>> Target In : 149 !!!:..!.!!|||:!!||||||||||||!!!|||.!!:!!{ } 186 lyIleCysAlaIleIleSerTyrIleAlaThrProPheIle{I}++ 9093 : GCATATGCGCTATAATATCTTACATAGCGACACCGTTTATC{A}gt.............. : 9137 150 : tron 2 >>>> {ly}LeuAlaAsnIleGlyLysAsnGluSerAspArgValLeuProP : 164 bp { !} ...:!!! ! !!..|||:!!|||!!:|||!.!!!!! !| -+{le}SerValHisSerGlnSerAsnLysSerGluArgAlaPheLeuP 9138 : ...........tg{TT}TCAGTGCACAGTCAAAGCAACAAATCTGAAAGAGCGTTTCTGT : 9365 165 : heAsnMetTrpValAsnLeuProLeuSerMetThrProTyrPheGluIleThrPheThrL : 184 ||:!!||||||:!!||||||||||||!!!:!::!!||||||!:!||| !! !!!..!!: heAspMetTrpLeuAsnLeuProLeuThrValSerProTyrTyrGluGlyMetLeuAlaV 9366 : TCGACATGTGGCTCAATTTACCTCTGACTGTTTCGCCTTACTACGAAGGAATGTTGGCTG : 9425 185 : euGln >>>> Target Intron 3 >>>> ThrLeuSerLeuTyrGlnIleGlyVa : 194 !!||| 1401 bp ! !! !.!!|||||| ! !|||:! alGln++ ++IleSerGlyLeuTyrPheThrGlyIl 9426 : TACAGgt.........................agATTTCAGGACTGTATTTCACAGGAAT : 10856 195 : lSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGlnPh : 214 !!!!||||||||||||||||||.!!!!!|||||||||!:!:!!|||:!!::!|||||||| eCysTyrPheCysPheAspAsnIlePheCysIleMetSerValHisLeuSerGlyGlnPh 10857 : CTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTGCATTTGAGTGGCCAGTT : 10916 215 : eLysValLeuGlnTyrArgIleSerAsnIleAlaAspLeuIleIleLysThrGluGluLy : 234 |::::!!||||||||||||:!:!!!!!.:!::!!|||:!! ! !:!!! !...||||| eArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGlnTyrGlnIleSerGluLy 10917 : TCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAATATCAGATAAgcgagaa : 10976 235 : sArgGluLysLeuIleValAspSerSerTyrPheSerSerLysCysTyrThrThrPheLy : 254 |... ::: !:!!:!!!!:..!!!! !!! !!!:!! !||| !! !||||| sAsnMetGluSerValLeuGluAspCys------ThrArgArgSerTyrGluLysPheLy 10977 : aaatatggaatcTGTATTGGAAGACTGT------ACACGTAGATCTTACGAGAAATTTAA : 11030 255 : sLysCysIleArgGlnHisGlnThrLeuIleThrTyrCysArgLysLeuGluAlaValPh : 274 |!..! !:!!||||||||||||||||||||| !|||! !..!||||||||| !|||!: sSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLysLeuGluHisValTy 11031 : GAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAGCTTGAACACGTTTA : 11090 275 : eAsnLeuIleValLeuGluGlnValLeuMetPheSerLeuLeuIleCysLeuAspGlyTy : 294 !!.. !|||:!!|||! !|||||||||:!!||||||:!!|||||||||||| !||||| rThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIleCysLeuPheGlyTy 11091 : CACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATTTGCCTCTTTGGTTA : 11150 295 : rGlnIleLeuMet >>>> Target Intron 4 >>>> AlaAspGlyAspIleLys : 304 ||||||||||:!! 1305 bp |||:!! !..!:!! ! rGlnIleLeuLeu++ ++AlaAsnThrSerLeuAla 11151 : TCAGATATTATTGgt.........................agGCTAATACTTCTCTTGCA : 12485 305 : ThrArgLeuIlePheSerLeuHisValLeuAlaCysLeuCysGlnLeuLeuMetPheSer : 324 ! !||| !||||||! !!!!! !:!!! !!.!..!:!! ! !|||!!!||||||!!! ArgArgSerIlePheMetPheLeuIleCysGlyAlaMetValLeuLeuPheMetPheThr 12486 : AGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTTTTATTGTTTATGTTCACC : 12545 325 : TyrSerCysAspCysIleIleArgGluSerValAsnValAlaThrAlaAlaTyrGlyGly : 344 |||||||||:!! :!:|||..!:!!|||! !|||:!!||| !|||||||||..!!.! TyrSerCysAsnMetValIleGluGlnSerAspAsnIleAlaPheAlaAlaTyrSerAla 12546 : TACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCTTTTGCGGCGTATTCGGCA : 12605 345 : ProTrpThrLeuLeuProMetThrThrAsnGlyLysMetMetArgLysAspLeuIleVal : 364 ! !|||||| !:!!||||||!.!! !!.!||||||! !:!:||| ! |||||||||:!! LeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeuArgHisAspLeuIleMet 12606 : CTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTACGGCATGATTTGATAATG : 12665 365 : ValIleMetArgSerSerIleProCysCysLeuThrGlyLys<->PhePheIleValSer : 383 |||||| !||||||!!! ! !||||||||||||!.!!!. |||||| !|||||| ValIleGlyArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePheProValSer 12666 : GTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATGGATTTTTCCCTGTGTCC : 12725 384 : LeuGluThrTyrThrSer >>>> Target Intron 5 >>>> ValLeuSerThrA : 394 |||||||||||||||!!! 359 bp :::|||||||||| LeuGluThrTyrThrThr++ ++IleLeuSerThrA 12726 : TTAGAAACTTATACTACGgt.........................agattttgAGTACCG : 13117 395 : laAlaSerTyrPheThrLeuLeuArgAsnAsnIle : 405 ||||||||||||||||||||||||||||||||:!! laAlaSerTyrPheThrLeuLeuArgAsnAsnVal 13118 : CGGCGTCGTACTTCACATTATTGAGAAATAACGTA : 13152 vulgar: AfOr91_1 4 405 . KQ414828.1 7905 13152 + 836 M 60 180 5 0 2 I 0 792 3 0 2 M 84 252 S 0 1 5 0 2 I 0 182 3 0 2 S 1 2 M 36 108 5 0 2 I 0 1397 3 0 2 M 58 174 G 2 0 M 53 159 5 0 2 I 0 1301 3 0 2 M 80 240 G 0 3 M 11 33 5 0 2 I 0 355 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 7906 13152 836 + . gene_id 3 ; sequence AfOr91_1 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 7906 8085 . + . KQ414828.1 exonerate:protein2genome:local exon 7906 8085 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 8086 8087 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 8086 8881 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 8880 8881 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 8882 9134 . + . KQ414828.1 exonerate:protein2genome:local exon 8882 9134 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 9135 9136 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 9135 9320 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 9319 9320 . + . intron_id 1 ; splice_site "TG" KQ414828.1 exonerate:protein2genome:local cds 9321 9430 . + . KQ414828.1 exonerate:protein2genome:local exon 9321 9430 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 9431 9432 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 9431 10831 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 10830 10831 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 10832 11164 . + . KQ414828.1 exonerate:protein2genome:local exon 10832 11164 . + . insertions 0 ; deletions 2 KQ414828.1 exonerate:protein2genome:local splice5 11165 11166 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 11165 12469 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 12468 12469 . + . intron_id 3 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 12470 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12745 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13104 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 13103 13104 . + . intron_id 4 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 13105 13152 . + . KQ414828.1 exonerate:protein2genome:local exon 13105 13152 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 7906 13152 836 + . alignment_id 3 ; Query AfOr91_1 ; Align 7906 5 180 ; Align 8882 65 252 ; Align 9323 150 108 ; Align 10832 186 174 ; Align 11006 246 159 ; Align 12470 299 240 ; Align 12713 379 33 ; Align 13105 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_1 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 734 Query range: 4 -> 298 Target range: 36186 -> 38201 5 : GluSerAspIleSerValArgLeuThrSerIlePheMetLysLeuValGlyLeuTrpMet : 24 .....!|||:!!|||:!!!:!|||.!!!:!.!!|||:!! ! :!!||||||!!!|||.!. ArgGlnAspValSerIleLysLeuAlaAsnPhePheLeuTyrValValGlyPheTrpPhe 36187 : CGTCAAGACGTTTCCATTAAATTAGCCAACTTTTTTCTGTATGTCGTCGGCTTCTGGTTC : 36244 25 : AlaAlaAsnGlnTyrGluGlnArgMetArgAsnAlaMetIleThrTyrAsnValValAla : 44 |||||||||!:: |||:!! !!.!.||||||||| !||| !|||!.!:!!|||.!! AlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeuTyrThrIleValThr 36245 : GCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCGGCGATTCTGTATACCATTGTCACG : 36304 45 : IleLeuPheAlaLeuTrpIleGlnThrMetAspIleTyrTyrSerTrpGlyAsnLeuSer : 64 :!!!!!|||!.!:!!|||:!!||| !! ! :!!||||||:!!||||||||||||..! ValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrTyrAlaTrpGlyAsnLeuGlu 36305 : GTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGGCTTTATTACGCCTGGGGAAACCTTGAA : 36364 65 : >>>> Target Intron 1 >>>> AlaCysIlePheSerThrSerAsnThrLeuS : 75 669 bp !.!|||!!:!:!! !.!!.!!||| !|||: ++ ++ValCysMetTyrMetAlaGlyAsnGlyLeuA 36365 : gt.........................agGTTTGCATGTACATGGCAGGCAACGGTTTAG : 37066 76 : erLeuIleLeuProLeuLeuLysIlePheIleLeuLeuSerHisLysGluGluPhePheA : 95 !!:!!:!!||| !:!!:!!||||||||| !|||:!! !||||||:!!:!!|||.!! laMetValLeuAspIleIleLysIlePheSerLeuValValHisLysLysLysPheLeuG 37067 : CCATGGTTTTGGATATAATCAAGATTTTCTCCCTAGTCGTACACAAGAAAAAGTTTCTCG : 37126 96 : rgLeuIleValTyrMetGlnArgAsnPheLeuArgGlyAsnTyrAspAspTyrGluArgG : 115 !!||||||! !|||||||||!:!|||||||||!.! !|||||||||.!.||||||!.!. lyLeuIleGluTyrMetGlnLysAsnPheLeuHisLeuAsnTyrAspGlnTyrGluAsnS 37127 : GTCTGATTGAGTACATGCAGAAGAATTTCTTGCATTTGAACTACGATCAGTACGAGAATT : 37186 116 : luValValPheGlyCysLysArgLysCysThrPhePheIleCysPhePheThrPhePheT : 135 ..|||:!! !...||||||! !|||! !!:!|||:!:||| ...:::||||||: erValIleAlaGlnAlaLysArgMetCysIleTyrPheValCysValLeuSerPhePheS 37187 : CTGTTATCGCACAGGCGAAACGAATGTGCATTTACTTCGTGTGcgttttgtcattttttt : 37246 136 : hrMetAlaThrIleValSerTyrIleAlaSerProIleValGlyLeu{A} >>>> Tar : 151 ::...::::!!:!!:!!|||||||||!.!!!!|||:!!||| {:} erGlnSerSerValLeuSerTyrIleValArgProLeuVal------{S}++ 37247 : ctcaatctTCAGTTCTTTCCTATATAGTAAGGCCACTTGTA------{T}gt........ : 37291 152 : get Intron 2 >>>> {la}AsnIleGlyLysAsnGluSerAspArgValLeuProP : 164 169 bp {::}|||:!!|||||||||||||||||||||! !! ! !! ++{er}AsnLeuGlyLysAsnGluSerAspArgGluHisIleT 37292 : .................ag{ca}AATCTTGGAAAGAATGAATCTGATAGAGAACATATAT : 37496 165 : heAsnMetTrpValAsnLeuProLeuSerMetThrProTyrPheGluIleThrPheThrL : 184 :!:!!||||||:!!:!!||||||||||||!!:|||||||||:::|||||||||::!! !: yrAspMetTrpLeuAspLeuProLeuSerIleThrProTyrTyrGluIleThrTyrIleI 37497 : ACGATATGTGGCTCGATCTACCATTATCCATAACAccatattatgaaattacttACATAA : 37556 185 : euGln >>>> Target Intron 3 >>>> ThrLeuSerLeuTyrGlnIleGlyVa : 194 !!||| 307 bp .!!||||||:!!||||||:!!.!!!. leGln++ ++AlaLeuSerValTyrGlnValSerAl 37557 : TACAGgt.........................agGCTTTATCTGTGTACCAAGTTAGCGC : 37893 195 : lSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGlnPh : 214 !!!!|||.!!||||||||| ...... |||::: |||||||||||||||||||| aCysTyrLeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPh 37894 : GTGTTACCTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTT : 37953 215 : eLysValLeuGlnTyrArgIleSerAsnIleAlaAspLeuIleIleLysThrGluGluLy : 234 |::::!!|||||||||||||||:!!|||:!::!!! !||| ! !:!!! !! !:!!!. eArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeu---SerGluIleValLysSe 37954 : TCGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTA---AGCGAGATAGTGAAAAG : 38010 235 : sArgGluLysLeuIleValAspSerSerTyrPheSerSerLysCysTyrThrThrPheLy : 254 .!!!|||!!.! !! !..!|||..!! !||| |||..!|||||||||! !! !||||| rSerGluAsnProSerThrAspGluLeuTyr---SerGluLysCysTyrIleLysPheLy 38011 : CAGTGAAAATCCAAGCACAGATGAATTATAC---TCAGAGAAATGTTACATCAAGTTTAA : 38067 255 : sLysCysIleArgGlnHisGlnThrLeuIleThrTyrCysArgLysLeuGluAlaValPh : 274 |!!.||||||!:!|||||||||.!!|||||| !!:!||| !! !||||||! !||||| sAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPh 38068 : GAATTGCATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATT : 38127 275 : eAsnLeuIleValLeuGluGlnValLeuMetPheSerLeuLeuIleCysLeuAspGlyTy : 294 |!..:!!|||!.!|||! !||||||||||||||||||:!!|||||||||!!!! !! !|| eThrValIleAlaLeuGlyGlnValLeuMetPheSerIleLeuIleCysPheValValTy 38128 : CACGGTAATTGCACTCGGACAAGTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTA : 38187 295 : rGlnIleLeuMet : 298 |||| !|||:!! rGlnAlaLeuLeu 38188 : TCAAGCACTCCTG : 38201 vulgar: AfOr91_1 4 298 . KQ414828.1 36186 38201 + 734 M 60 180 5 0 2 I 0 665 3 0 2 M 84 252 G 2 0 S 0 1 5 0 2 I 0 165 3 0 2 S 1 2 M 34 102 5 0 2 I 0 303 3 0 2 M 42 126 G 1 0 M 16 48 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 36187 38201 734 + . gene_id 4 ; sequence AfOr91_1 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 36187 36366 . + . KQ414828.1 exonerate:protein2genome:local exon 36187 36366 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 36367 36368 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 36367 37035 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37034 37035 . + . intron_id 0 ; splice_site "aG" KQ414828.1 exonerate:protein2genome:local cds 37036 37288 . + . KQ414828.1 exonerate:protein2genome:local exon 37036 37288 . + . insertions 0 ; deletions 2 KQ414828.1 exonerate:protein2genome:local splice5 37289 37290 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37289 37457 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 37456 37457 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 37458 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37458 37561 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 38201 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 38201 . + . insertions 0 ; deletions 2 KQ414828.1 exonerate:protein2genome:local similarity 36187 38201 734 + . alignment_id 4 ; Query AfOr91_1 ; Align 36187 5 180 ; Align 37036 65 252 ; Align 37460 152 102 ; Align 37869 186 126 ; Align 37995 229 48 ; Align 38043 246 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_1 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 704 Query range: 150 -> 411 Target range: 2879 -> 5274 151 : AlaAsnIleGlyLysAsnGluSerAspArgValLeuProPheAsnMetTrpValAsnLeuPr : 171 |||!::||||||||||||||||||||||||:!!||| ! !!|||.!.|||:!!:!!||||| AlaSerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuPr 2880 : GCAAgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCC : 2940 172 : oLeuSerMetThrProTyrPheGluIleThrPheThrLeuGln >>>> Target Intro : 186 |:!!!!!!!:|||||||||:::|||||| ||||||:!!||| 406 bp oIleThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2941 : GATAACCATCACACCATactatgaaatattatttacgaTACAGgt................. : 2987 187 : n 1 >>>> ThrLeuSerLeuTyrGlnIleGlyValSerTyrPheCysPheAspAsnPheL : 203 ! !!!!! !:!! ! :!! !!:!!||||||.!!|||.!!|||||||||| ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheL 2988 : ........agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTC : 3442 204 : euCysIleMetAsnLeuHisValAlaGlyGlnPheLysValLeuGlnTyrArgIleSerAsn : 223 |||||!!:!!:|||||||||..!||| !||||||::!:!!||||||||||||:!:|||||| euCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsn 3443 : TGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAAT : 3502 224 : IleAlaAspLeuIleIleLysThrGluGluLysArgGluLysLeuIleValAspSerSerTy : 244 :!:..!! ! .!!.!.|||:::! :::|||::: ::: !!! ValCysGly------------AlaAsnGluArgSerAspLysIleSerLysLysThrProSe 3503 : GTGTGCGGT------------GCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTC : 3553 245 : rPheSerSerLysCysTyrThrThrPheLysLysCysIleArgGlnHisGlnThrLeuIleT : 265 ! !|||..!:!!||||||.!!! !||||||!!.||||||!:!|||||||||.!!|||||| rAsnSerAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleG 3554 : CAATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAG : 3616 266 : hrTyrCysArgLysLeuGluAlaValPheAsnLeuIleValLeuGluGlnValLeuMetPhe : 285 !||||||!.!||||||:!!! !||||||..!:!!.!!||||||! !|||||||||:!:||| luTyrCysAsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPhe 3617 : AATACTGTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTC : 3676 286 : SerLeuLeuIleCysLeuAspGlyTyrGlnIleLeuMet >>>> Target Intron 2 : 299 |||||||||!!:||||||||||||||| :!::!!||| 457 bp SerLeuLeuMetCysLeuAspGlyTyr---LeuValMet++ 3677 : AGTTTGTTAATGTGCCTCGATGGATAT---TTGGTGATGgt..................... : 3717 300 : >>>> AlaAspGlyAspIleLysThrArgLeuIlePheSerLeuHisValLeuAlaCysLe : 317 ! !||| ! !|||! ! !||||||! !|||! !!!!|||:!! !!.!||||| ++GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLe 3718 : ....agGAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCT : 4226 318 : uCysGlnLeuLeuMetPheSerTyrSerCysAspCysIleIleArgGluSerValAsnValA : 338 |||||||||||||||||||!!!|||||||||||||||:!:||||||||||||:!!||||||| uCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValA 4227 : GTGCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGG : 4289 339 : laThrAlaAlaTyrGlyGlyProTrpThrLeuLeuProMetThrThrAsnGlyLysMetMet : 358 ||!.!||| !|||! ! !! !!|||! !! !||||||||| !! !::!|||::!|||:!! laAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeu 4290 : CCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTG : 4349 359 : ArgLysAspLeuIleValValIleMetArgSerSerIleProCysCysLeuThrGly<->Ly : 378 ||||||||||||! ! !!|||||| ||||||!!!:!!|||||||||||||||!.! ArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGl 4350 : CGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGG : 4412 379 : sPhePheIleValSerLeuGluThrTyrThrSer >>>> Target Intron 3 >>>> : 390 !|||||| !|||||||||||||||||||||||| 761 bp yPhePheProValSerLeuGluThrTyrThrSer++ + 4413 : ATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt.........................a : 5207 391 : ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnIleGlySerAlaAspG : 410 :!!|||||||||||||||||||||||||||||||||||||||.!. !!.!..! !! !| +IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnGlnGluAlaGluIleValG 5208 : gATTTTAAGTACCGCAGCGTCATACTTCACACTGCTACGAAACCAAGAAGCAGAAATAGTTG : 5269 411 : luThr : 411 ||||| luThr 5270 : AAACA : 5274 vulgar: AfOr91_1 150 411 . KQ414828.1 2879 5274 + 704 M 35 105 5 0 2 I 0 402 3 0 2 M 41 123 G 4 0 M 64 192 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 79 237 G 0 3 M 12 36 5 0 2 I 0 757 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2880 5274 704 + . gene_id 5 ; sequence AfOr91_1 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2880 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2880 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 0 ; deletions 5 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 5208 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 5207 5208 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 5209 5274 . + . KQ414828.1 exonerate:protein2genome:local exon 5209 5274 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2880 5274 704 + . alignment_id 5 ; Query AfOr91_1 ; Align 2880 151 105 ; Align 3391 186 123 ; Align 3514 231 192 ; Align 3706 296 9 ; Align 4172 299 237 ; Align 4412 378 36 ; Align 5209 390 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_1 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 469 Query range: 4 -> 190 Target range: 26075 -> 27465 5 : GluSerAspIleSerValArgLeuThrSerIlePheMetLysLeuValGlyLeuTrpMet : 24 .....!|||:!!||||||||||||.!!!:!.!!|||:!! ! :!!||||||!!!|||.!. ArgGlnAspValSerValArgLeuAlaAsnPhePheLeuTyrValValGlyPheTrpPhe 26076 : CGTCAAGACGTTTCCGTTAGATTAGCCAACTTTTTTCTGTATGTCGTCGGCTTCTGGTTC : 26133 25 : AlaAlaAsnGlnTyrGluGlnArgMetArgAsnAlaMetIleThrTyrAsnValValAla : 44 |||||||||!:: |||:!! !!.!.||||||||| !||| !|||!.!:!!|||.!! AlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeuTyrThrIleValThr 26134 : GCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCGGCGATTCTGTATACCATTGTCACG : 26193 45 : IleLeuPheAlaLeuTrpIleGlnThrMetAspIleTyrTyrSerTrpGlyAsnLeuSer : 64 :!!!!!|||!.!:!!|||:!!||| ! ! :!!|||!:!:!!|||||||||!!!..! ValPhePheValMetTrpLeuGlnLeuGlyGlyLeuTyrPheAlaTrpGlyAsnPheGlu 26194 : GTCTTCTTTGTCATGTGGCTTCAGCTGGGAGGGCTTTATTTCGCCTGGGGAAACTTTGAA : 26253 65 : >>>> Target Intron 1 >>>> AlaCysIlePheSerThrSerAsnThrLeuS : 75 669 bp !.!|||!!:!:!! !.!!.!!||| !|||: ++ ++ValCysMetTyrMetAlaGlyAsnGlyLeuA 26254 : gt.........................agGTTTGCATGTACATGGCTGGCAACGGTTTAG : 26955 76 : erLeuIleLeuProLeuLeuLysIlePheIleLeuLeuSerHisLysGluGluPhePheA : 95 !!:!!:!!||| !:!!:!!|||||||||! !|||:!! !||||||:!!:!!|||.!! laMetValLeuAspIleIleLysIlePheThrLeuValValHisLysLysLysPheLeuG 26956 : CCATGGTTTTGGATATAATCAAGATTTTCACCCTAGTCGTACACAAGAAAAAGTTTCTCG : 27015 96 : rgLeuIleValTyrMetGlnArgAsnPheLeuArgGlyAsnTyrAspAspTyrGluArgG : 115 !!||||||! !|||||||||!:!||||||! !!.! !|||||||||.!.||||||!.!. lyLeuIleGluTyrMetGlnLysAsnPheTrpHisLeuAsnTyrAspGlnTyrGluAsnS 27016 : GTCTGATTGAGTACATGCAGAAGAATTTTTGGCATTTGAACTACGATCAGTACGAGAATT : 27075 116 : luValValPheGlyCysLysArgLysCysThrPhePheIleCysPhePheThrPhePheT : 135 ..|||:!! !...||||||! !|||! !!:!|||:!:||| ...:::||||||: erValLeuAlaGlnAlaLysArgMetCysIleTyrPheValCysValLeuSerPhePheS 27076 : CTGTTTTGGCACAGGCGAAACGAATGTGCATTTACTTCGTGTGcgttttgtcattttttt : 27135 136 : hrMetAlaThrIleValSerTyrIleAlaSerProIleVal{G} >>>> Target In : 149 ::...::::!!:!!:!!||||||||| !!!!|||:!!|||{ } 163 erGlnSerSerValLeuSerTyrIleIleArgProLeuVal{P}++ 27136 : ctcaatctTCAGTTCTTTCCTATATCATAAGGCCACTTGTA{T}gt.............. : 27180 150 : tron 2 >>>> {ly}LeuAlaAsnIleGlyLysAsnGluSerAspArgValLeuProP : 164 bp { !}|||||||||:!!|||||||||||||||||||||! !! ! !| --{he}LeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleP 27181 : ...........ta{tt}ttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATAT : 27385 165 : heAsnMetTrpValAsnLeuProLeuSerMetThrProTyrPheGluIleThrPheThrL : 184 ||:!!|||||| !!:!!||||||||||||:!:|||||||||:::|||||||||::!! !: heAspMetTrpPheAspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleI 27386 : TCGATATGTGGTTCGATCTACCATTATCCGTAACAccatattatgaaattacttACATAA : 27445 185 : euGlnThrLeuSerLeuTyr : 190 !!|||..!||| !!:!!!:! leGlnValLeuProIlePhe 27446 : TACAGGTATTACCAATTTTC : 27465 vulgar: AfOr91_1 4 190 . KQ414828.1 26075 27465 + 469 M 60 180 5 0 2 I 0 665 3 0 2 M 84 252 S 0 1 5 0 2 I 0 159 3 0 2 S 1 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26076 27465 469 + . gene_id 6 ; sequence AfOr91_1 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 26076 26255 . + . KQ414828.1 exonerate:protein2genome:local exon 26076 26255 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 26256 26257 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 26256 26924 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 26923 26924 . + . intron_id 0 ; splice_site "aG" KQ414828.1 exonerate:protein2genome:local cds 26925 27177 . + . KQ414828.1 exonerate:protein2genome:local exon 26925 27177 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 27178 27179 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 27178 27340 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 27339 27340 . + . intron_id 1 ; splice_site "ta" KQ414828.1 exonerate:protein2genome:local cds 27341 27465 . + . KQ414828.1 exonerate:protein2genome:local exon 27341 27465 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 26076 27465 469 + . alignment_id 6 ; Query AfOr91_1 ; Align 26076 5 180 ; Align 26925 65 252 ; Align 27343 150 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_1 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 441 Query range: 184 -> 390 Target range: 22722 -> 23829 185 : GlnThrLeuSerLeuTyrGlnIleGlyValSerTyrPheCysPheAspAsnPheLeuCys : 204 |||.!!||||||:!!||||||:!!.!!!.!!!!|||.!!||||||||| ...... GlnAlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIlePhePhe 22723 : CAGGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatttttttc : 22780 205 : IleMetAsnLeuHisValAlaGlyGlnPheLysValLeuGlnTyrArgIleSerAsnIle : 224 |||::: |||||||||||||||||||||::::!!|||||||||||||||:!!|||:!: IleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnVal 22781 : attttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTG : 22840 225 : AlaAspLeuIleIleLysThrGluGluLysArgGluLysLeuIleValAspSerSerTyr : 244 :!!! !||| ! !:!!! !! !:!!!..!!!|||!!.! !! !..!|||..!! !||| SerGlyLeu---SerGluIleValLysSerSerGluAsnProSerThrAspGluLeuTyr 22841 : TCAGGTCTA---AGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAATTATAC : 22897 245 : PheSerSerLysCysTyrThrThrPheLysLysCysIleArgGlnHisGlnThrLeuIle : 264 |||..!|||||||||! !! !||||||!!.||||||!:!|||||||||.!!|||||| ---SerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 22898 : ---TCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATT : 22954 265 : ThrTyrCysArgLysLeuGluAlaValPheAsnLeuIleValLeuGluGlnValLeuMet : 284 !!:!||| !! !||||||! !||||||!..:!!|||||||||! !|||||||||||| GluPheCysAlaThrLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMet 22955 : GAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCTAATG : 23014 285 : PheSerLeuLeuIleCysLeuAspGlyTyrGlnIleLeuMetAlaAspGlyAspIleLys : 304 ! !|||:!!|||||||||!!! !|||||||||:!!|||:!!!.!..! !!!:! ! ! SerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeuValSerIleGluSerTyr 23015 : TCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGGTGAGTATCGAAAGCTAT : 23074 305 : {T} >>>> Target Intron 1 >>>> {hr}ArgLeuIlePheSerLeuHisVal : 313 {|} 492 bp {||}|||:!! !|||:!!! ! !:!! {T}-+ +-{hr}ArgValAlaPheAlaCysPheLeu 23075 : {A}at.........................at{CG}CGCGTTGCTTTCGCGTGCTTCTTG : 23593 314 : LeuAlaCysLeuCysGlnLeuLeuMetPheSerTyrSerCysAspCysIleIleArgGlu : 333 :!! ! !!:!! !!||||||! !||||||!!!||||||||||||||||||! !! !||| MetMetGlyMetSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGlu 23594 : ATGATGGGCATGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCATAACAACAGAA : 23653 334 : SerValAsnValAlaThrAlaAlaTyrGlyGlyProTrpThrLeuLeuProMetThrThr : 353 |||:!!|||:!!||| !:!!!.!|||!.!|||||||||! ! !||||||||| !! ! SerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLys 23654 : AGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATGGACAAA : 23713 354 : AsnGlyLysMetMetArgLysAspLeuIleValValIleMetArgSerSerIleProCys : 373 !||||||:!!:!:||||||!!:||| !:!!:!!|||:!!|||:!!!!! !|||! ! PheGlyLysLeuLeuArgLysGluLeuGlnMetLeuIleLeuArgAlaArgArgProSer 23714 : TTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGGGCGAGACGACCTTCC : 23773 374 : CysLeuThrGly<->LysPhePheIleValSerLeuGluThrTyrThrSerVal : 390 ..!||||||!.! !|||||| !:!!||||||||||||!:!|||!.!||| AlaLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 23774 : GCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 23829 vulgar: AfOr91_1 184 390 . KQ414828.1 22722 23829 + 441 M 43 129 G 1 0 M 16 48 G 1 0 M 59 177 S 0 1 5 0 2 I 0 488 3 0 2 S 1 2 M 72 216 G 0 3 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22723 23829 441 + . gene_id 7 ; sequence AfOr91_1 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22723 23077 . + . KQ414828.1 exonerate:protein2genome:local exon 22723 23077 . + . insertions 0 ; deletions 2 KQ414828.1 exonerate:protein2genome:local splice5 23078 23079 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 23078 23569 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 23568 23569 . + . intron_id 0 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local cds 23570 23829 . + . KQ414828.1 exonerate:protein2genome:local exon 23570 23829 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22723 23829 441 + . alignment_id 7 ; Query AfOr91_1 ; Align 22723 185 129 ; Align 22852 229 48 ; Align 22900 246 177 ; Align 23572 306 216 ; Align 23791 378 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_1 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 295 Query range: 62 -> 190 Target range: 21885 -> 22433 63 : LeuSerAlaCysIlePheSerThrSerAsnThrLeuSerLeuIleLeuProLeuLeuLys : 82 ........!|||!!:!:!! !.!!!!!|||!:!|||:!!|||:!!||| !:!!:!!||| PheGlnValCysMetTyrMetAlaCysAsnSerLeuAlaLeuValLeuAspIleIleLys 21886 : tttcaggTTTGCATGTACATGGCATGCAACAGTTTAGCCCTGGTTTTGGATATAATCAAG : 21943 83 : IlePheIleLeuLeuSerHisLysGluGluPhePheArgLeuIleValTyrMetGlnArg : 102 ||||||:!!|||||| !!..|||:!!:!!|||.!! !!||||||! !|||||||||!:! IlePheValLeuLeuValArgLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLys 21944 : ATTTTCGTCCTACTCGTACGGAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAG : 22003 103 : AsnPheLeuArgGlyAsnTyrAspAspTyrGluArgGluValValPheGlyCysLysArg : 122 ||||||! !!.! !|||||||||.!. !!|||!.!...:!!:!! !...|||||| AsnPheTrpHisLeuAsnTyrAspGlnAspGluAsnSerIleIleAlaHisAlaLysArg 22004 : AATTTTTGGCATTTGAACTACGACCAGGACGAGAATTCTATTATCGCACACGCGAAACGA : 22063 123 : LysCysThrPhePheIleCysPhePheThrPhePheThrMetAlaThrIleValSerTyr : 142 ! !|||! !!:!|||:!!||| !!|||:!!|||! !:!!...:!!|||:!! !!|||||| ThrCysIleTyrPheValCysValPheSerPheCysSerGlnSerThrValPheSerTyr 22064 : ACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTAT : 22123 143 : IleAlaSerProIleValGlyLeuAlaAsn >>>> Target Intron 1 >>>> I : 153 ||| !!!!|||.!!||| !! :::... 164 bp : IleIleArgProPheValCysLysSerGln++ +-L 22124 : ATAATAAGGCCATTTGTATGTAAGTCTcaagt.........................atC : 22320 154 : leGlyLysAsnGluSerAspArgValLeuProPheAsnMetTrpValAsnLeuProLeuS : 173 !!|||||||||||||||||||||! !! ! !!:!:!!||||||:!!:!!|||||||||| euGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuProLeuS 22321 : TTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCATTAT : 22380 174 : erMetThrProTyrPheGluIleThrPheThrLeuGlnThrLeuSerLeuTyr : 190 ||:!:|||||||||:::|||||||||::!! !:!!|||..!||| !!:!!!:! erValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuProIlePhe 22381 : CCGTAACAccatattatgaaattacttACATAATACAGGTATTACCAATTTTC : 22433 vulgar: AfOr91_1 62 190 . KQ414828.1 21885 22433 + 295 M 90 270 5 0 2 I 0 160 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21886 22433 295 + . gene_id 8 ; sequence AfOr91_1 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 21886 22155 . + . KQ414828.1 exonerate:protein2genome:local exon 21886 22155 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22156 22157 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 22156 22319 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22318 22319 . + . intron_id 0 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local cds 22320 22433 . + . KQ414828.1 exonerate:protein2genome:local exon 22320 22433 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21886 22433 295 + . alignment_id 8 ; Query AfOr91_1 ; Align 21886 63 270 ; Align 22320 153 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_1 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 232 Query range: 305 -> 405 Target range: 28526 -> 29239 306 : ArgLeuIlePheSerLeuHisValLeuAlaCysLeuCysGlnLeuLeuMetPheSerTyr : 325 |||:!! !!!.:!!! ! ! !:!!.!! !!:!! !!||||||! !||||||!!!||| ArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuTrpMetPheThrTyr 28527 : CGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTATGGATGTTCACGTAC : 28584 326 : SerCysAspCysIleIleArgGluSerValAsnValAlaThrAlaAlaTyrGlyGlyPro : 345 |||||||||||||||! !! !||||||:!!|||:!!||| !:!!!.!|||!.!|||||| SerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyPro 28585 : AGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCA : 28644 346 : TrpThrLeuLeuProMetThrThrAsnGlyLysMetMetArgLysAspLeuIleValVal : 365 |||! ! !||||||||| ||||||::::!:|||||||||||| !|||:!! TrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeu 28645 : TGGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTC : 28704 366 : IleMetArgSerSerIleProCysCysLeuThrGly<->LysPhePheIleValSerLeu : 384 |||:!!|||:!!!!! !|||! !! !||||||!.! !|||||| !:!!|||||| IleLeuArgAlaArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeu 28705 : ATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTC : 28764 385 : GluThrTyrThrSer >>>> Target Intron 1 >>>> ValLeuSerThrAlaA : 395 ||||||!:!|||!.! 410 bp :!!:!!||||||:!! GluThrPheThrLys++ ++IleMetSerThrSerM 28765 : GAAACCTTTACTAAGgt.........................agATCATGAGTACATCAA : 29207 396 : laSerTyrPheThrLeuLeuArgAsnAsnIle : 405 !||||||||||||||||||!:!.!. !||| etSerTyrPheThrLeuLeuLysGlnCysIle 29208 : TGTCGTATTTCACATTATTAAAACAATGTATC : 29239 vulgar: AfOr91_1 305 405 . KQ414828.1 28526 29239 + 232 M 72 216 G 0 3 M 12 36 5 0 2 I 0 406 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28527 29239 232 + . gene_id 9 ; sequence AfOr91_1 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 28527 28781 . + . KQ414828.1 exonerate:protein2genome:local exon 28527 28781 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 28782 28783 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 28782 29191 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 29190 29191 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 29192 29239 . + . KQ414828.1 exonerate:protein2genome:local exon 29192 29239 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28527 29239 232 + . alignment_id 9 ; Query AfOr91_1 ; Align 28527 306 216 ; Align 28746 378 36 ; Align 29192 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_1 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 199 Query range: 316 -> 390 Target range: 38535 -> 38760 317 : LeuCysGlnLeuLeuMetPheSerTyrSerCysAspCysIleIleArgGluSerValAsn : 336 :!! !!||||||! !||||||!!!||||||||||||||||||! !! !||||||:!!||| ValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsn 38536 : GTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAAC : 38593 337 : ValAlaThrAlaAlaTyrGlyGlyProTrpThrLeuLeuProMetThrThrAsnGlyLys : 356 :!!||| !:!!!.!|||!.!|||||||||! ! !||||||||| |||||| IleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLys 38594 : ATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaa : 38653 357 : MetMetArgLysAspLeuIleValValIleMetArgSerSerIleProCysCysLeuThr : 376 ::::!:|||||||||||| !|||:!!|||:!!|||:!!!!! !|||! !! !|||||| LeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThr 38654 : ctgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACT : 38713 377 : Gly<->LysPhePheIleValSerLeuGluThrTyrThrSerVal : 390 !.! !|||||| !:!!||||||||||||!:!|||!.!||| AlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 38714 : GCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 38760 vulgar: AfOr91_1 316 390 . KQ414828.1 38535 38760 + 199 M 61 183 G 0 3 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38536 38760 199 + . gene_id 10 ; sequence AfOr91_1 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38536 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38536 38760 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38536 38760 199 + . alignment_id 10 ; Query AfOr91_1 ; Align 38536 317 183 ; Align 38722 378 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_1 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 4 -> 62 Target range: 21045 -> 21219 5 : GluSerAspIleSerValArgLeuThrSerIlePheMetLysLeuValGlyLeuTrpMet : 24 .....!|||:!!||||||||||||.!!!:!.!!!:!:!! ! :!!||||||!!!|||.!. ArgGlnAspValSerValArgLeuAlaAsnPheTyrLeuTyrValValGlyPheTrpPhe 21046 : CGCCAAGACGTTTCCGTTAGATTAGCCAATTTTTATCTGTATGTCGTCGGCTTCTGGTTC : 21103 25 : AlaAlaAsnGlnTyrGluGlnArgMetArgAsnAlaMetIleThrTyrAsnValValAla : 44 |||||||||!:: |||:!! !!.!. !!|||||| !||| !|||!.!:!!|||.!! AlaAlaAsnArgIleGluGluTrpPheGlyAsnAlaAlaIleLeuTyrThrIleValThr 21104 : GCCGCTAATCGTATAGAGGAATGGTTCGGAAACGCGGCGATTCTGTATACCATTGTCACG : 21163 45 : IleLeuPheAlaLeuTrpIleGlnThrMetAspIleTyrTyrSerTrpGlyAsn : 62 :!!!!!|||!.!:!!|||:!!||| !! ! :!!|||!:!|||||||||||| ValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSerTrpGlyAsn 21164 : GTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGACTTTATTTCTCCTGGGGAAAC : 21219 vulgar: AfOr91_1 4 62 . KQ414828.1 21045 21219 + 159 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21046 21219 159 + . gene_id 11 ; sequence AfOr91_1 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 21046 21219 . + . KQ414828.1 exonerate:protein2genome:local exon 21046 21219 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21046 21219 159 + . alignment_id 11 ; Query AfOr91_1 ; Align 21046 5 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_1 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 6 -> 82 Target range: 727 -> 955 7 : AspIleSerValArgLeuThrSerIlePheMetLysLeuValGlyLeuTrpMetAlaAlaAsnG : 28 ||||||:!!|||! !:!!|||:!!.!!!:!:!!|||:!!:!!|||!!!|||:!:|||! !!.! AspIleAlaValThrValThrAlaPheTyrLeuLysIleIleGlyPheTrpLeuAlaAspThrT 728 : GACATAGCGGTGACCGTTACGGCTTTCTACTTGAAAATTATCGGCTTCTGGTTAGCTGACACTT : 791 29 : lnTyrGluGlnArgMetArgAsnAlaMetIleThrTyrAsnValValAlaIleLeuPheAlaLe : 49 ! ! |||:!:||| |||... !.!!:!!..:!! !! !:!::!!! !|||:! yrGluGluLysArgArgArgLysPheAlaGlnAsnPheThrIlePheMetLeuValCysAlaVa 792 : ACGAGGAGAAacgtcgaagaaaattcgcgcAGAATTTCACGATATTTATGCTGGTGTGCGCTGT : 854 50 : uTrpIleGlnThrMetAspIleTyrTyrSerTrpGlyAsnLeuSerAlaCysIlePheSerThr : 70 ! |||:!!|||! !||||||||||||!!!||||||:!!!!!|||!.! !!||| !!|||! ! lValIleGluThrArgAspIleTyrTyrThrTrpGlyAspPheSerValSerIleValSerIle 855 : GGTAATTGAGACGAGGGATATCTATTACACCTGGGGTGATTTCAGCGTAAGTATAGTTTCAATT : 917 71 : SerAsnThrLeuSerLeuIleLeuProLeuLeuLys : 82 ! !.!. !! !||| !|||! ! !:!!:!!!:! IleGluHisHisSerArgIleArgGluMetIleArg 918 : ATCGAACACCATTCGAGGATACGTGAGATGATTAGG : 955 vulgar: AfOr91_1 6 82 . KQ414828.1 727 955 + 134 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 728 955 134 + . gene_id 12 ; sequence AfOr91_1 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 728 955 . + . KQ414828.1 exonerate:protein2genome:local exon 728 955 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 728 955 134 + . alignment_id 12 ; Query AfOr91_1 ; Align 728 7 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr95 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1409 Query range: 3 -> 403 Target range: 15118 -> 19906 4 : AspAspPheSerIleAsnLeuSerSerIlePheIleLysLeuMetGlyIleTrpMetAla : 23 ||||||.!.||||||!:!|||!!!|||:!!|||!!:|||:!!:!:|||:!:||||||||| AspAspIleSerIleSerLeuThrSerValPheMetLysIleValGlyLeuTrpMetAla 15119 : GATGACATATCAATCAGCCTGACGTCCGTTTTCATGAAGATCGTTGGACTGTGGATGGCG : 15176 24 : AsnGlyArgSerGluLysCysValArgAsnValThrIleValTyrSerIleIleAlaLeu : 43 :::..!|||! !|||:!! ! |||||||||:!!|||:!: !|||!!!:!:||||||:!! SerAsnArgPheGluGlnArgValArgAsnIleThrLeuCysTyrThrLeuIleAlaIle 15177 : TCGAACCGTTTCGAGCAACGAGTACGAAATATCACGCTGTGTTACACGCTGATCGCGATT : 15236 44 : LeuPheGlyLeuTrpLeuGlnIleThrAspMetTyrTyrSerTrpGlyAspPheSer > : 63 ||||||!.!||||||:!!|||!!:||||||:!!|||||||||||||||||||||.!! LeuPheAlaLeuTrpIleGlnMetThrAspLeuTyrTyrSerTrpGlyAspPheGly++ 15237 : CTCTTCGCCCTGTGGATACAAATGACGGATTTGTATTACTCGTGGGGAGATTTTGGTgt. : 15298 64 : >>> Target Intron 1 >>>> GluCysIlePheSerMetCysAsnMetLeuSerI : 74 891 bp ! |||:!!!:!!!! ||||||!!:||||||: ++AlaCysLeuTyrThrAlaCysAsnIleLeuSerL 15299 : ........................agGCCTGTTTATATACTGCATGCAACATTTTATCGT : 16220 75 : leAlaAlaProLeuLeuLysLeuIleThrLeuIleValHisArgLysAspPhePheTyrL : 94 !!.!! !|||!!!||||||:!!:!!..!|||:!!!.!|||:::...|||||||||:::| euThrIleProPheLeuLysIleLeuValLeuLeuAlaHisLysAsnAspPhePheHisL 16221 : TAACAATACCGTTTCTCAAGATACTCGTCTTGCTTGCAcacaaaaatgatttttttcatt : 16280 95 : euIleLeuTyrLeuGlnArgLysPheLeuHisGlyAspTyrAspAspTyrGluArgAsnI : 114 ||||||||:!!|||||||||:!!|||||||||!.!||||||||||||||||||!:!!!.| euIleLeuHisLeuGlnArgGluPheLeuHisAlaAspTyrAspAspTyrGluLysLysI 16281 : tgattcTGCACCTACAACGAGAATTCTTGCATGCAGATTACGACGACTACGAGAAAAAGA : 16340 115 : leValLeuAsnCysLysArgLysCysThrPhePheThrCysSerLeuThrPheThrThrL : 134 ||:!!|||..!|||:!!|||:!!||||||||||||..!|||! !!!!|||.!! !||| leLeuLeuGlyCysGlnArgGlnCysThrPhePheValCysPhePheThrLeuPheThrL 16341 : TTTTGCTCGGTTGCCAACGTCAATGTACCTTCTTCGTTTGTTTCTTCACACTTTTCACTA : 16400 135 : euAlaThrValValSerTyrIleIleAsnProLeuVal{A} >>>> Target Intro : 147 !!.!||||||:!!|||||||||:!!|||||||||:!!{|} 1386 bp ysGlyThrValIleSerTyrIleValAsnProLeuIle{A}++ 16401 : AAGGAACTGTTATCTCGTACATCGTTAATCCGCTTATT{G}gt................. : 16442 148 : n 2 >>>> {la}AsnIleGlyArgAsnGluSerAspArgAlaLeuProPheAsnIleT : 163 {||}|||||||||:::|||||||||!!:||| !||||||||||||!!:| ++{la}AsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetT 16443 : ........ag{ca}aatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGT : 17873 164 : rpIleAspLeuProLeuThrIleThrProTyrTyrGluIleThrPheValLeuGlu >> : 182 ||:!!:!!|||||||||:!!!!:|||||||||||||||||||||||| |||:!! rpValAsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln++ 17874 : GGGTCAACTTGCCATTATCAATGACGCCATATTACgaaataactttttcattaCAGgt.. : 17932 183 : >> Target Intron 3 >>>> ValIleSerLeuTyrHisIleGlyValSerTyrPh : 193 110 bp |||:!:||||||||||||||||||||||||||||| ++ValLeuSerLeuTyrHisIleGlyValSerTyrPh 17933 : .......................aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTT : 18073 194 : eCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGlnPheGlnValLe : 213 |||||||||||||||||||||||||||||||||||||!.!||| !||||||!:!||||| eCysPheAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLe 18074 : CTgcttcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATT : 18133 214 : uGlnHisArgIleSerAsnIleThrAspLeu<->IleIleGluLysGluGluLysArgGl : 232 ||||:!!|||!!::!!|||!!:||||||||| |||::::::|||:::... uGlnTyrArgMetAlaAsnMetThrAspLeuLysAspLysGluArgLysGluArgAsnMe 18134 : GCAATACCGAATGGCGAATATGACCGATTTAAAGGacaaagagaggaaagagagaaatat : 18193 233 : uLysLeuIleMetAspSerSerTyrPheAlaSerLysCysTyrAlaIlePheLysLysCy : 252 ||| !! !:!!..!|||:!!! !||||||!!!:!!|||||| !:!!.!!||| ! ! tLysThrSerValSerSerAlaCysPheAlaThrGluCysTyrAsnValLeuLysAspTy 18194 : gaAGACAAGTGTGAGTTCGGCGTGCTTTGCAACAGAATGTTACAACGTTCTCAAAGATTA : 18253 253 : sIleArgGlnHisGlnAlaLeuIleAlaTyrCysArgLysLeuGluGluValPheAsnLe : 272 !||||||||||||||| !|||||||||||||||!.!|||||||||:!!|||||||||:! rIleArgGlnHisGlnAsnLeuIleAlaTyrCysAsnLysLeuGluLysValPheAsnIl 18254 : TATCAGACAGCATCAGAACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGTTCAATAT : 18313 273 : uIleValLeuGluGlnValLeuMetPheSerLeuLeuIleCysLeuAspGlyTyrLeuVa : 292 !|||||||||! !|||:!!||||||||||||:!!||||||||||||||||||!:!! !:! eIleValLeuGlyGlnLeuLeuMetPheSerMetLeuIleCysLeuAspGlyPheGlnIl 18314 : CATTGTTCTGGGGCAATTGTTAATGTTCAGCATGTTGATCTGTCTCGATGGATTTCAGAT : 18373 293 : lLeuMet >>>> Target Intron 4 >>>> AlaAspThrSerThrThrThrArg : 302 !|||||| 975 bp |||:!!||| !!|||! !|||||| eLeuMet++ ++AlaAsnThrProThrArgThrArg 18374 : ACTTATGgt.........................agGCAAATACACCTACCAGAACCCGA : 19378 303 : LeuIlePheGlyLeuHisIleThrValCysLeuCysGlnLeuLeuMetPheThrTyrSer : 322 ||||||||| !!!!|||||| !!.!|||:!!||||||||||||||||||||||||||| LeuIlePheIlePheHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSer 19379 : CTGATTTTCATCTTTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGC : 19438 323 : CysAspCysIleIleArgGluSerSerSerIleAlaThrAlaAlaAsnArgGlyProTrp : 342 ||||||||||||||||||||||||!!!|||! !||| !|||!.! !!!!!||||||||| CysAspCysIleIleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyProTrp 19439 : TGCGACTGCATCATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGG : 19498 343 : ProMetIleProMetThrThrSerGlyArgMetMetLysLysAspLeuIleLeuValIle : 362 !!:!::!!||||||!:!.!!..!|||!:!|||!!:!:!|||||||||!!:||||||||| ThrLeuLeuProMetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuValIle 19499 : ACACTTTTACCAATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATC : 19558 363 : MetArgSerGlyThrProCysCysLeuThrGlyArgGlyPhePheValValSerLeuGlu : 382 |||||||||.!!..!|||||||||||||||!.!||||||||||||||||||||||||||| MetArgSerSerValProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGlu 19559 : ATGAGATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAA : 19618 383 : ThrTyrThrSer >>>> Target Intron 5 >>>> ValLeuSerThrAlaAlaS : 393 |||||||||.!! 223 bp ||||||||||||||||||| ThrTyrThrGly++ ++ValLeuSerThrAlaAlaS 19619 : ACGTACACAGGGgt.........................agGTTTTAAGCACCGCAGCCT : 19874 394 : erTyrPheThrLeuLeuLysGlnHisSerGlu : 403 |||||||||||||||||||||||...|||||| erTyrPheThrLeuLeuLysGlnArgSerGlu 19875 : CATACTTTACGTTGCTGAAGCAAAGATCAGAG : 19906 vulgar: AfOr95 3 403 . KQ414828.1 15118 19906 + 1409 M 59 177 5 0 2 I 0 887 3 0 2 M 84 252 S 0 1 5 0 2 I 0 1382 3 0 2 S 1 2 M 34 102 5 0 2 I 0 106 3 0 2 M 42 126 G 0 3 M 71 213 5 0 2 I 0 971 3 0 2 M 92 276 5 0 2 I 0 219 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15119 19906 1409 + . gene_id 1 ; sequence AfOr95 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 15119 15295 . + . KQ414828.1 exonerate:protein2genome:local exon 15119 15295 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 15296 15297 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 15296 16186 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 16185 16186 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 16187 16439 . + . KQ414828.1 exonerate:protein2genome:local exon 16187 16439 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 16440 16441 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 16440 17825 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 17824 17825 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 17826 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17826 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 2 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18381 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19906 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19906 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15119 19906 1409 + . alignment_id 1 ; Query AfOr95 ; Align 15119 4 177 ; Align 16187 63 252 ; Align 17828 148 102 ; Align 18040 182 126 ; Align 18169 224 213 ; Align 19357 295 276 ; Align 19856 387 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr95 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 727 Query range: 146 -> 403 Target range: 2879 -> 6468 147 : AlaAsnIleGlyArgAsnGluSerAspArgAlaLeuProPheAsnIleTrpIleAspLeuPr : 167 |||!::||||||:::||||||||||||||| !||| ! !!|||.!!|||||||||||||| AlaSerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuPr 2880 : GCAAgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCC : 2940 168 : oLeuThrIleThrProTyrTyrGluIleThrPheValLeuGlu >>>> Target Intro : 182 |:!!|||||||||||||||||||||||| |||...:!!:!! 406 bp oIleThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2941 : GATAACCATCACACCATactatgaaatattatttacgaTACAGgt................. : 2987 183 : n 1 >>>> ValIleSerLeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPheL : 199 :!!.!!! !:!! :!!:!! !!:!!||||||.!!|||.!!|||||||||| ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheL 2988 : ........agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTC : 3442 200 : euCysIleMetAsnLeuHisValAlaGlyGlnPheGlnValLeuGlnHisArgIleSerAsn : 219 |||||!!:!!:|||||||||..!||| !||||||!:!:!!||||||:!!|||:!:|||||| euCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsn 3443 : TGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAAT : 3502 220 : IleThrAspLeuIleIleGluLysGluGluLysArgGluLysLeuIleMetAspSerSerTy : 240 :!: !! ! !.!.|||:::! :::|||::: ::: !!! ValCysGly------------AlaAsnGluArgSerAspLysIleSerLysLysThrProSe 3503 : GTGTGCGGT------------GCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTC : 3553 241 : rPheAlaSerLysCysTyrAlaIlePheLysLysCysIleArgGlnHisGlnAlaLeuIleA : 261 ! !:!!..!:!!|||||||||! ||||||!!.||||||!:!||||||||||||||||||! rAsnSerAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleG 3554 : CAATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAG : 3616 262 : laTyrCysArgLysLeuGluGluValPheAsnLeuIleValLeuGluGlnValLeuMetPhe : 281 !||||||!.!||||||:!!|||||||||..!:!!.!!||||||! !|||||||||:!:||| luTyrCysAsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPhe 3617 : AATACTGTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTC : 3676 282 : SerLeuLeuIleCysLeuAspGlyTyrLeuValLeuMet >>>> Target Intron 2 : 295 |||||||||!!:||||||||||||||||||||| ||| 457 bp SerLeuLeuMetCysLeuAspGlyTyrLeuVal---Met++ 3677 : AGTTTGTTAATGTGCCTCGATGGATATTTGGTG---ATGgt..................... : 3717 296 : >>>> AlaAspThrSerThrThrThrArgLeuIlePheGlyLeuHisIleThrValCysLe : 313 ! !|||||| !!! !! ! !||||||! !||| !!!!|||:!!|||! !||||| ++GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLe 3718 : ....agGAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCT : 4226 314 : uCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSerSerSerIleA : 334 |||||||||||||||||||||||||||||||||||||:!:||||||||||||! !!:!:!:| uCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValA 4227 : GTGCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGG : 4289 335 : laThrAlaAlaAsnArgGlyProTrpProMetIleProMetThrThrSerGlyArgMetMet : 354 ||!.!||| ! !! ! !! !!||| ! :!:|||||| !! !||||||||||||:!! laAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeu 4290 : CCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTG : 4349 355 : LysLysAspLeuIleLeuValIleMetArgSerGlyThrProCysCysLeuThrGlyArgGl : 375 ::!|||||||||! !!!!|||||| |||||| !!..!|||||||||||||||!.! !!|| ArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGl 4350 : CGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGG : 4412 376 : yPhePheValValSerLeuGluThrTyrThrSer >>>> Target Intron 3 >>>> : 387 ||||||| !|||||||||||||||||||||||| 1970 bp yPhePheProValSerLeuGluThrTyrThrSer++ + 4413 : ATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt.........................a : 6416 388 : ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuLysGlnHisSerGlu : 403 |||:!!|||||||||!.!||||||||||||||||||!:!|||!.!! !||| +ValIleSerThrAlaValSerTyrPheThrLeuLeuArgGlnArgIleGlu 6417 : gGTTATAAGTACAGCAGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAG : 6468 vulgar: AfOr95 146 403 . KQ414828.1 2879 6468 + 727 M 35 105 5 0 2 I 0 402 3 0 2 M 41 123 G 4 0 M 66 198 G 1 0 M 1 3 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2880 6468 727 + . gene_id 2 ; sequence AfOr95 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2880 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2880 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 0 ; deletions 5 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6468 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6468 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2880 6468 727 + . alignment_id 2 ; Query AfOr95 ; Align 2880 147 105 ; Align 3391 182 123 ; Align 3514 227 198 ; Align 3712 294 3 ; Align 4172 295 276 ; Align 6418 387 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr95 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 575 Query range: 142 -> 403 Target range: 32380 -> 34310 143 : AsnProLeuValAlaAsnIleGlyArgAsnGluSerAspArgAlaLeuProPheAsnIle : 162 ||| ::::::||||||:!!|||!:!|||||||||||||||! !! ! !!:!:!!!!: AsnPheIleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMet 32381 : aattttattttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATG : 32438 163 : TrpIleAspLeuProLeuThrIleThrProTyrTyrGluIleThrPheValLeuGluVal : 182 |||:!!||||||||||||:!!:!!|||||||||||||||||||||::!:!!:!!:!!||| TrpLeuAspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnVal 32439 : TGGCTCGATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTA : 32498 183 : IleSerLeuTyrHisIleGly{V} >>>> Target Intron 1 >>>> {al}Ser : 191 :!! !!:!!!:! ! {:} 307 bp {!!}!!! LeuProIlePheSerArgGln{M}-+ ++{et}Cys 32499 : TTACCAATTTTCTCAAGGCaa{a}ct.........................ag{TG}TGT : 32832 192 : TyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGlnPheGln : 211 |||.!!||||||||||||...... |||||| !|||||||||||||||||||||!:: TyrLeuCysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArg 32833 : TACCTTTGCTttgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGT : 32892 212 : ValLeuGlnHisArgIleSerAsnIleThrAspLeuIleIleGluLysGluGluLysArg : 231 :!!||||||:!!||||||:!!|||:!::!!! !||| ...:!! !! !|||!!! IleLeuGlnTyrArgIleAlaAsnValSerGlyLeu------SerGluIleValLysSer 32893 : ATACTACAATACAGAATTGCCAATGTGTCAGGTCTA------AGCGAGATAGTGAAGAGC : 32946 232 : GluLysLeuIleMetAspSerSerTyrPheAlaSerLysCysTyrAlaIlePheLysLys : 251 .!. ! !! !! :!!..!! !:!:!!..!||||||||| !! ||||||!!. AsnAspAsnThrSerThrAlaGluLeuTyrSerGluLysCysTyrIleLysPheLysAsn 32947 : AATGATAATACAAGCACGGCTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAAT : 33006 252 : CysIleArgGlnHisGlnAlaLeuIleAlaTyrCysArgLysLeuGluGluValPheAsn : 271 ||||||!:!|||||||||||||||||| :::|||... |||||||||||||||!.. CysIleGlnGlnHisGlnAlaLeuIleGluPheCysGluIleLeuGluGluValPheThr 33007 : TGCATTCAACAACATCAGGCACTaattgaattttgtgaaatactCGAAGAGGTATTCACG : 33066 272 : LeuIleValLeuGluGlnValLeuMetPheSerLeuLeuIleCysLeuAspGlyTyrLeu : 291 :!!|||||||||! !||||||||||||||||||:!!:!!||||||!!!! !|||||| ! ValIleValLeuGlyGlnValLeuMetPheSerIleIleIleCysPheAlaGlyTyrGlu 33067 : GTAATCGTACTCGGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAA : 33126 292 : ValLeuMet >>>> Target Intron 2 >>>> AlaAspThrSerThrThrThrA : 302 ||||||:!! 406 bp ! ! !! ! !:!!| ValLeuLeu++ ++IleThrLeuProPheGluSerA 33127 : GTACTCCTGgt.........................agATAACGTTACCATTTGAATCGC : 33565 303 : rgLeuIlePheGlyLeuHisIleThrValCysLeuCysGlnLeuLeuMetPheThrTyrS : 322 ||:!! !||| !! ! !:!:! !..! !!:!! !!||||||! !||||||||||||| rgValAlaPheThrCysPheLeuIleThrGlyValSerGlnLeuTrpMetPheThrTyrS 33566 : GCGTTGCTTTCACGTGCTTCTTGATTACGGGCGTGAGTCAACTATGGATGTTCACGTACA : 33625 323 : erCysAspCysIleIleArgGluSerSerSerIleAlaThrAlaAlaAsnArgGlyProT : 342 |||||:!!||||||! !! !|||||| !!:!|||||| !:!!!.! !! !||||||| erCysAsnCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProT 33626 : GTTGCAATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCAT : 33685 343 : rpProMetIleProMetThrThrSerGlyArgMetMetLysLysAspLeuIleLeuValI : 362 || !! :!!|||||| |||:::::::!:!:!||||||||| !:!!:!!| rpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuI 33686 : GGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAGGATTTACAAGTGCTCA : 33745 363 : leMetArgSerGlyThrProCysCysLeuThrGlyArgGlyPhePheValValSerLeuG : 382 ||:!!|||:!! !! !|||! !..!||||||!.! !!||||||||| !:!!!!!|||| leLeuArgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleThrLeuG 33746 : TCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATAACTCTCG : 33805 383 : luThrTyrThrSer >>>> Target Intron 3 >>>> ValLeuSerThrAlaAl : 392 |||||!:!|||!.! 440 bp :!!:!!||||||:!! luThrPheThrLys++ ++IleMetSerThrSerMe 33806 : AAACCTTTACTAAGgt.........................agATCATGAGTACATCAAT : 34275 393 : aSerTyrPheThrLeuLeuLysGlnHisSerGlu : 403 !|||||||||||||||||||||||| !:!!||| tSerTyrPheThrLeuLeuLysGlnSerAlaGlu 34276 : GTCGTATTTCACCCTACTAAAACAAAGTGCCGAG : 34310 vulgar: AfOr95 142 403 . KQ414828.1 32380 34310 + 575 M 47 141 S 0 1 5 0 2 I 0 303 3 0 2 S 1 2 M 33 99 G 2 0 M 69 207 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32381 34310 575 + . gene_id 3 ; sequence AfOr95 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32381 32522 . + . KQ414828.1 exonerate:protein2genome:local exon 32381 32522 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32523 32524 . + . intron_id 1 ; splice_site "ct" KQ414828.1 exonerate:protein2genome:local intron 32523 32829 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32828 32829 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32830 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32830 33137 . + . insertions 0 ; deletions 2 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 3 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34310 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34310 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32381 34310 575 + . alignment_id 3 ; Query AfOr95 ; Align 32381 143 141 ; Align 32832 191 99 ; Align 32931 226 207 ; Align 33544 295 276 ; Align 34260 387 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr95 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 565 Query range: 63 -> 294 Target range: 37038 -> 38201 64 : CysIlePheSerMetCysAsnMetLeuSerIleAlaAlaProLeuLeuLysLeuIleThr : 83 |||!!:!:!! ! !!||| |||:!!!!:!.! ! !:!!:!!|||:!!.!!:!! CysMetTyrMetAlaGlyAsnGlyLeuAlaMetValLeuAspIleIleLysIlePheSer 37039 : TGCATGTACATGGCAGGCAACGGTTTAGCCATGGTTTTGGATATAATCAAGATTTTCTCC : 37096 84 : LeuIleValHisArgLysAspPhePheTyrLeuIleLeuTyrLeuGlnArgLysPheLeu : 103 |||:!!||||||!:!||| ! |||.!! !|||||| !|||:!!|||!:!!!.|||||| LeuValValHisLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheLeu 37097 : CTAGTCGTACACAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTCTTG : 37156 104 : HisGlyAspTyrAspAspTyrGluArgAsnIleValLeuAsnCysLysArgLysCysThr : 123 ||| !:!!||||||.!.||||||!.!::!:!!:!! !.!....||||||! !|||! ! HisLeuAsnTyrAspGlnTyrGluAsnSerValIleAlaGlnAlaLysArgMetCysIle 37157 : CATTTGAACTACGATCAGTACGAGAATTCTGTTATCGCACAGGCGAAACGAATGTGCATT : 37216 124 : PhePheThrCysSerLeuThrPheThrThrLeuAlaThrValValSerTyrIleIleAsn : 143 !:!|||..!||| |||:::||| ::: ::::!!|||:!!|||||||||:!!!.. TyrPheValCysValLeuSerPhePheSerGlnSerSerValLeuSerTyrIleValArg 37217 : TACTTCGTGTGcgttttgtcatttttttctcaatctTCAGTTCTTTCCTATATAGTAAGG : 37276 144 : ProLeuVal{A} >>>> Target Intron 1 >>>> {la}AsnIleGlyArgAsn : 152 |||||||||{:} 169 bp {!!}|||:!!|||!:!||| ProLeuVal{S}++ ++{er}AsnLeuGlyLysAsn 37277 : CCACTTGTA{T}gt.........................ag{ca}AATCTTGGAAAGAAT : 37472 153 : GluSerAspArgAlaLeuProPheAsnIleTrpIleAspLeuProLeuThrIleThrPro : 172 ||||||||||||! !! ! !!:!:!!!!:|||:!!||||||||||||:!!||||||||| GluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuProLeuSerIleThrPro 37473 : GAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCATTATCCATAACAcca : 37532 173 : TyrTyrGluIleThrPheValLeuGlu >>>> Target Intron 2 >>>> ValI : 183 |||||||||||||||::!:!!:!!:!! 307 bp !.!: TyrTyrGluIleThrTyrIleIleGln++ ++AlaL 37533 : tattatgaaattacttACATAATACAGgt.........................agGCTT : 37872 184 : leSerLeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIleMetA : 203 !!|||:!!|||!!.:!!.!!!.!!!!|||.!!||||||||| ...... |||::: euSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIlePhePheIleLeuC 37873 : TATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatttttttcattttgt : 37932 204 : snLeuHisValAlaGlyGlnPheGlnValLeuGlnHisArgIleSerAsnIleThrAspL : 223 |||||||||||||||||||||!:::!!||||||:!!||||||:!!|||:!::!!! !| ysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnValSerGlyL 37933 : gtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTC : 37992 224 : euIleIleGluLysGluGluLysArgGluLysLeuIleMetAspSerSerTyrPheAlaS : 243 || ! !|||! !! !:!!!..!!!|||!!.! !! !! |||..!! !||| :!!. eu---SerGluIleValLysSerSerGluAsnProSerThrAspGluLeuTyr---SerG 37993 : TA---AGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAATTATAC---TCAG : 38046 244 : erLysCysTyrAlaIlePheLysLysCysIleArgGlnHisGlnAlaLeuIleAlaTyrC : 263 .!||||||||| !! ||||||!!.||||||!:!||||||||||||||||||! !!:!| luLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheC 38047 : AGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAATTTT : 38106 264 : ysArgLysLeuGluGluValPheAsnLeuIleValLeuGluGlnValLeuMetPheSerL : 283 || !! !|||||||||||||||!..:!!|||!.!|||! !||||||||||||||||||: ysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnValLeuMetPheSerI 38107 : GTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCTAATGTTTAGCA : 38166 284 : euLeuIleCysLeuAspGlyTyrLeuValLeuMet : 294 !!|||||||||!!!! !! !|||! !!.!|||:!! leLeuIleCysPheValValTyrGlnAlaLeuLeu 38167 : TACTAATTTGCTTCGTCGTGTATCAAGCACTCCTG : 38201 vulgar: AfOr95 63 294 . KQ414828.1 37038 38201 + 565 M 83 249 S 0 1 5 0 2 I 0 165 3 0 2 S 1 2 M 34 102 5 0 2 I 0 303 3 0 2 M 42 126 G 1 0 M 16 48 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37039 38201 565 + . gene_id 4 ; sequence AfOr95 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37039 37288 . + . KQ414828.1 exonerate:protein2genome:local exon 37039 37288 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37289 37290 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37289 37457 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37456 37457 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 37458 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37458 37561 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 38201 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 38201 . + . insertions 0 ; deletions 2 KQ414828.1 exonerate:protein2genome:local similarity 37039 38201 565 + . alignment_id 4 ; Query AfOr95 ; Align 37039 64 249 ; Align 37460 148 102 ; Align 37869 182 126 ; Align 37995 225 48 ; Align 38043 242 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr95 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 505 Query range: 142 -> 387 Target range: 22301 -> 23829 143 : AsnProLeuValAlaAsnIleGlyArgAsnGluSerAspArgAlaLeuProPheAsnIle : 162 ||| ::::::||||||:!!|||!:!|||||||||||||||! !! ! !!:!:!!!!: AsnPheIleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMet 22302 : aattttattttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATG : 22359 163 : TrpIleAspLeuProLeuThrIleThrProTyrTyrGluIleThrPhe >>>> Targe : 179 |||:!!||||||||||||:!!:!!|||||||||||||||||||||::! TrpLeuAspLeuProLeuSerValThrProTyrTyrGluIleThrTyr-+ 22360 : TGGCTCGATCTACCATTATCCGTAACAccatattatgaaattacttACat.......... : 22412 180 : t Intron 1 >>>> ValLeuGluValIleSerLeuTyrHisIleGlyValSerTyrP : 193 316 bp !.!|||...||| |||!!.:!!.!!!.!!!!|||. ++AlaLeuSerVal---------TyrGlnValSerAlaCysTyrL 22413 : ...............agGCTTTATCTGTG---------TACCAAGTTAGCGCGTGTTACC : 22759 194 : heCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGlnPheGlnValL : 213 !!||||||||| ...... |||::: |||||||||||||||||||||!:::!!| euCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleL 22760 : TTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATAC : 22819 214 : euGlnHisArgIleSerAsnIleThrAspLeuIleIleGluLysGluGluLysArgGluL : 233 |||||:!!||||||:!!|||:!::!!! !||| ! !|||! !! !:!!!..!!!|||! euGlnTyrArgIleAlaAsnValSerGlyLeu---SerGluIleValLysSerSerGluA 22820 : TACAATACAGAATTGCCAATGTGTCAGGTCTA---AGCGAGATAGTGAAAAGCAGTGAAA : 22876 234 : ysLeuIleMetAspSerSerTyrPheAlaSerLysCysTyrAlaIlePheLysLysCysI : 253 !.! !! !! |||..!! !||| :!!..!||||||||| !! ||||||!!.|||| snProSerThrAspGluLeuTyr---SerGluLysCysTyrIleLysPheLysAsnCysI 22877 : ATCCAAGCACAGATGAATTATAC---TCAGAGAAATGTTACATCAAGTTTAAGAATTGCA : 22933 254 : leArgGlnHisGlnAlaLeuIleAlaTyrCysArgLysLeuGluGluValPheAsnLeuI : 273 ||!:!||||||||||||||||||! !!:!||| !! !|||||||||||||||!..:!!| leGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValI 22934 : TTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAA : 22993 274 : leValLeuGluGlnValLeuMetPheSerLeuLeuIleCysLeuAspGlyTyrLeuValL : 293 ||||||||! !||||||||||||! !|||:!!|||||||||!!! !||||||! !|||| leValLeuGlyGlnValLeuMetSerSerIleLeuIleCysPheIleGlyTyrGlnValL 22994 : TCGTACTCGGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTAC : 23053 294 : euMetAlaAspThrSerThrThr{T} >>>> Target Intron 2 >>>> {hr}A : 302 ||:!!!.!..!! !..!!:! !{|} 492 bp {||}| euLeuValSerIleGluSerTyr{T}-+ +-{hr}A 23054 : TCCTGGTGAGTATCGAAAGCTAT{A}at.........................at{CG}C : 23572 303 : rgLeuIlePheGlyLeuHisIleThrValCysLeuCysGlnLeuLeuMetPheThrTyrS : 322 ||:!! !|||!.!! ! !:!:! !:!! !!:!! !!||||||! !||||||||||||| rgValAlaPheAlaCysPheLeuMetMetGlyMetSerGlnLeuTrpMetPheThrTyrS 23573 : GCGTTGCTTTCGCGTGCTTCTTGATGATGGGCATGAGTCAACTATGGATGTTCACGTATA : 23632 323 : erCysAspCysIleIleArgGluSerSerSerIleAlaThrAlaAlaAsnArgGlyProT : 342 ||||||||||||||! !! !|||||| !!:!|||||| !:!!!.! !! !||||||| erCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProT 23633 : GTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCAT : 23692 343 : rpProMetIleProMetThrThrSerGlyArgMetMetLysLysAspLeuIleLeuValI : 362 || !! :!!|||||| !! !! !|||!:!:!!:!:!:!|||!!:||| !:!!:!!| rpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysGluLeuGlnMetLeuI 23693 : GGATAAATTTACCAATGGACAAATTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTCA : 23752 363 : leMetArgSerGlyThrProCysCysLeuThrGlyArgGlyPhePheValValSerLeuG : 382 ||:!!|||:!! !! !|||! !..!||||||!.! !!||||||||| !:!!||||||| leLeuArgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleSerLeuG 23753 : TCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCG : 23812 383 : luThrTyrThrSerVal : 387 |||||!:!|||!.!||| luThrPheThrLysVal 23813 : AAACCTTTACTAAGGTA : 23829 vulgar: AfOr95 142 387 . KQ414828.1 22301 23829 + 505 M 36 108 5 0 2 I 0 312 3 0 2 M 4 12 G 3 0 M 38 114 G 1 0 M 16 48 G 1 0 M 59 177 S 0 1 5 0 2 I 0 488 3 0 2 S 1 2 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22302 23829 505 + . gene_id 5 ; sequence AfOr95 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22302 22409 . + . KQ414828.1 exonerate:protein2genome:local exon 22302 22409 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22410 22411 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 22410 22725 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 23077 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 23077 . + . insertions 0 ; deletions 5 KQ414828.1 exonerate:protein2genome:local splice5 23078 23079 . + . intron_id 2 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 23078 23569 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 23568 23569 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local cds 23570 23829 . + . KQ414828.1 exonerate:protein2genome:local exon 23570 23829 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22302 23829 505 + . alignment_id 5 ; Query AfOr95 ; Align 22302 143 108 ; Align 22726 179 12 ; Align 22738 186 114 ; Align 22852 225 48 ; Align 22900 242 177 ; Align 23572 302 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr95 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 391 Query range: 181 -> 403 Target range: 10831 -> 13155 182 : ValIleSerLeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIle : 201 :!! !.!!|||||| !! !|||:!!!!!||||||||||||||||||.!!!!!|||||| IleSerGlyLeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIle 10832 : ATTTCAGGACTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATC : 10889 202 : MetAsnLeuHisValAlaGlyGlnPheGlnValLeuGlnHisArgIleSerAsnIleThr : 221 |||!:!:!!|||:!!::!|||||||||!:::!!||||||:!!|||:!:!!!!!.:!::!! MetSerValHisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSer 10890 : ATGAGCGTGCATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCC : 10949 222 : AspLeuIleIleGluLysGluGluLysArgGluLysLeuIleMetAspSerSerTyrPhe : 241 |||:!! ! !:!!! !...||||||... ::: !:!!:!!!!:..!!!! AspValGlnTyrGlnIleSerGluLysAsnMetGluSerValLeuGluAspCys------ 10950 : GACGTACAATATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGT------ : 11006 242 : AlaSerLysCysTyrAlaIlePheLysLysCysIleArgGlnHisGlnAlaLeuIleAla : 261 .!! !!!:!! !|||! !! !||||||!..! !:!!||||||||||||.!!||||||! ! ThrArgArgSerTyrGluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAsp 11007 : ACACGTAGATCTTACGAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGAT : 11063 262 : TyrCysArgLysLeuGluGluValPheAsnLeuIleValLeuGluGlnValLeuMetPhe : 281 |||! !..!|||||||||.!.|||!:!!.. !|||:!!|||! !|||||||||:!!||| TyrTyrGluLysLeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPhe 11064 : TATTACGAGAAGCTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTC : 11123 282 : SerLeuLeuIleCysLeuAspGlyTyrLeuValLeuMetAlaAsp >>>> Target I : 297 |||:!!|||||||||||| !||||||! !:!!|||:!!!.!..! 1299 SerValLeuIleCysLeuPheGlyTyrGlnIleLeuLeuValSer-+ 11124 : AGTGTGTTAATTTGCCTCTTTGGTTATCAGATATTATTGGTTAGTat............. : 11173 298 : ntron 1 >>>> ThrSerThrThrThrArgLeuIlePheGlyLeuHisIleThrValC : 312 bp .!!!:!|||:!! ! ! ! ! ! !!!! .!! !:!!| ++AlaAsnThrSerLeuAlaArgArgSerIlePheMetPheLeuIleC 11174 : ............agGCTAATACTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATAT : 12515 313 : ysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCys<-><->IleIleArgGluS : 330 || !..!..!:!!|||:!!|||! !!:!!!!! !..!||| :!:|||..!:!!| ysGlyAlaMetValLeuLeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnS 12516 : GTGGCGCCATGGTTTTATTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAA : 12575 331 : erSerSerIleAlaThrAlaAlaAsnArgGlyProTrpProMetIleProMetThrThrS : 350 ||..!!:!|||||| !|||||| !! !!.!! !||| !! !!:||||||!.!! !! erAspAsnIleAlaPheAlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysT 12576 : GCGATAATATTGCTTTTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAA : 12635 351 : erGlyArgMetMetLysLysAspLeuIleLeuValIleMetArgSerGlyThrProCysC : 370 !!|||!:!! !:!:::! ! |||||||||:!!|||||| !|||||| !! ! !|||| hrGlyLysLysLeuArgHisAspLeuIleMetValIleGlyArgSerArgArgValCysC 12636 : CTGGCAAAAAGCTACGGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTT : 12695 371 : ysLeuThrGlyArgGlyPhePheValValSerLeuGluThrTyrThr--{S} >>>> T : 386 ||||||||!.!!.!||||||||| !|||||||||||||||||||||##{.} ysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThr##{G}++ 12696 : GTCTGACTGCGAATGGATTTTTCCCTGTGTCCTTAGAAACTTATACTAC{G}gt...... : 12748 387 : arget Intron 2 >>>> {er}ValLeuSerThrAlaAlaSerTyrPheThrLeuLe : 398 357 bp {.!}:::|||||||||||||||||||||||||||||||| +-{lu}IleLeuSerThrAlaAlaSerTyrPheThrLeuLe 12749 : ...................ac{ag}attttgAGTACCGCGGCGTCGTACTTCACATTATT : 13138 399 : uLysGlnHisSerGlu : 403 |!:!.!.:!! !||| uArgAsnAsnValGlu 13139 : GAGAAATAACGTAGAA : 13155 vulgar: AfOr95 181 403 . KQ414828.1 10831 13155 + 391 M 58 174 G 2 0 M 55 165 5 0 2 I 0 1295 3 0 2 M 29 87 G 0 6 M 60 180 F 0 2 S 0 1 5 0 2 I 0 353 3 0 2 S 1 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10832 13155 391 + . gene_id 6 ; sequence AfOr95 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 10832 11170 . + . KQ414828.1 exonerate:protein2genome:local exon 10832 11170 . + . insertions 0 ; deletions 2 KQ414828.1 exonerate:protein2genome:local splice5 11171 11172 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 11171 12469 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12468 12469 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 12470 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12745 . + . insertions 6 ; deletions 0 ; frameshifts 2 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13102 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13101 13102 . + . intron_id 1 ; splice_site "ac" KQ414828.1 exonerate:protein2genome:local cds 13103 13155 . + . KQ414828.1 exonerate:protein2genome:local exon 13103 13155 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10832 13155 391 + . alignment_id 6 ; Query AfOr95 ; Align 10832 182 174 ; Align 11006 242 165 ; Align 12470 297 87 ; Align 12563 326 180 ; Align 13105 387 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr95 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 324 Query range: 63 -> 186 Target range: 26927 -> 27465 64 : CysIlePheSerMetCysAsnMetLeuSerIleAlaAlaProLeuLeuLysLeuIleThr : 83 |||!!:!:!! ! !!||| |||:!!!!:!.! ! !:!!:!!|||:!!.!!||| CysMetTyrMetAlaGlyAsnGlyLeuAlaMetValLeuAspIleIleLysIlePheThr 26928 : TGCATGTACATGGCTGGCAACGGTTTAGCCATGGTTTTGGATATAATCAAGATTTTCACC : 26985 84 : LeuIleValHisArgLysAspPhePheTyrLeuIleLeuTyrLeuGlnArgLysPheLeu : 103 |||:!!||||||!:!||| ! |||.!! !|||||| !|||:!!|||!:!!!.|||! ! LeuValValHisLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheTrp 26986 : CTAGTCGTACACAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTTTGG : 27045 104 : HisGlyAspTyrAspAspTyrGluArgAsnIleValLeuAsnCysLysArgLysCysThr : 123 ||| !:!!||||||.!.||||||!.!::!:!!:!! !.!....||||||! !|||! ! HisLeuAsnTyrAspGlnTyrGluAsnSerValLeuAlaGlnAlaLysArgMetCysIle 27046 : CATTTGAACTACGATCAGTACGAGAATTCTGTTTTGGCACAGGCGAAACGAATGTGCATT : 27105 124 : PhePheThrCysSerLeuThrPheThrThrLeuAlaThrValValSerTyrIleIleAsn : 143 !:!|||..!||| |||:::||| ::: ::::!!|||:!!||||||||||||!.. TyrPheValCysValLeuSerPhePheSerGlnSerSerValLeuSerTyrIleIleArg 27106 : TACTTCGTGTGcgttttgtcatttttttctcaatctTCAGTTCTTTCCTATATCATAAGG : 27165 144 : ProLeuVal{A} >>>> Target Intron 1 >>>> {la}AsnIleGlyArgAsn : 152 |||||||||{:} 169 bp {!!}|||:!!|||!:!||| ProLeuVal{S}++ ++{er}AsnLeuGlyLysAsn 27166 : CCACTTGTA{T}gt.........................ag{ca}AATCTTGGAAAGAAT : 27361 153 : GluSerAspArgAlaLeuProPheAsnIleTrpIleAspLeuProLeuThrIleThrPro : 172 ||||||||||||! !! ! !|||:!!!!:|||.!!||||||||||||:!!:!!|||||| GluSerAspArgGluHisIlePheAspMetTrpPheAspLeuProLeuSerValThrPro 27362 : GAATCGGATAGAGAACATATATTCGATATGTGGTTCGATCTACCATTATCCGTAACAcca : 27421 173 : TyrTyrGluIleThrPheValLeuGluValIleSerLeuTyr : 186 |||||||||||||||::!:!!:!!:!!|||:!! !!:!!!:! TyrTyrGluIleThrTyrIleIleGlnValLeuProIlePhe 27422 : tattatgaaattacttACATAATACAGGTATTACCAATTTTC : 27465 vulgar: AfOr95 63 186 . KQ414828.1 26927 27465 + 324 M 83 249 S 0 1 5 0 2 I 0 165 3 0 2 S 1 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26928 27465 324 + . gene_id 7 ; sequence AfOr95 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 26928 27177 . + . KQ414828.1 exonerate:protein2genome:local exon 26928 27177 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 27178 27179 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 27178 27346 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 27345 27346 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 27347 27465 . + . KQ414828.1 exonerate:protein2genome:local exon 27347 27465 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 26928 27465 324 + . alignment_id 7 ; Query AfOr95 ; Align 26928 64 249 ; Align 27349 148 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr95 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 238 Query range: 312 -> 400 Target range: 28559 -> 29233 313 : LeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSerSerSer : 332 :!! !!||||||! !|||||||||||||||||||||||||||! !! !|||||| !!:! ValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsn 28560 : GTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAAC : 28617 333 : IleAlaThrAlaAlaAsnArgGlyProTrpProMetIleProMetThrThrSerGlyArg : 352 |||||| !:!!!.! !! !||||||||| !! :!!|||||| |||::: IleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLys 28618 : ATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaa : 28677 353 : MetMetLysLysAspLeuIleLeuValIleMetArgSerGlyThrProCysCysLeuThr : 372 ::::!:!:!||||||||| !:!!:!!|||:!!|||:!! !! !|||! !! !|||||| LeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThr 28678 : ctgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACT : 28737 373 : GlyArgGlyPhePheValValSerLeuGluThrTyrThrSer >>>> Target Intr : 387 !.! !!||||||||| !:!!||||||||||||!:!|||!.! 410 bp AlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 28738 : GCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt................ : 28784 388 : on 1 >>>> ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuLysGln : 400 :!!:!!||||||:!! !|||||||||||||||||||||||| ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGln 28785 : .........agATCATGAGTACATCAATGTCGTATTTCACATTATTAAAACAA : 29233 vulgar: AfOr95 312 400 . KQ414828.1 28559 29233 + 238 M 74 222 5 0 2 I 0 406 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28560 29233 238 + . gene_id 8 ; sequence AfOr95 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 28560 28781 . + . KQ414828.1 exonerate:protein2genome:local exon 28560 28781 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 28782 28783 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 28782 29191 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 29190 29191 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 29192 29233 . + . KQ414828.1 exonerate:protein2genome:local exon 29192 29233 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28560 29233 238 + . alignment_id 8 ; Query AfOr95 ; Align 28560 313 222 ; Align 29192 387 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr95 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 199 Query range: 312 -> 387 Target range: 38535 -> 38760 313 : LeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSerSerSer : 332 :!! !!||||||! !|||||||||||||||||||||||||||! !! !|||||| !!:! ValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsn 38536 : GTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAAC : 38593 333 : IleAlaThrAlaAlaAsnArgGlyProTrpProMetIleProMetThrThrSerGlyArg : 352 |||||| !:!!!.! !! !||||||||| !! :!!|||||| |||::: IleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLys 38594 : ATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaa : 38653 353 : MetMetLysLysAspLeuIleLeuValIleMetArgSerGlyThrProCysCysLeuThr : 372 ::::!:!:!||||||||| !:!!:!!|||:!!|||:!! !! !|||! !! !|||||| LeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThr 38654 : ctgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACT : 38713 373 : GlyArgGlyPhePheValValSerLeuGluThrTyrThrSerVal : 387 !.! !!||||||||| !:!!||||||||||||!:!|||!.!||| AlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 38714 : GCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 38760 vulgar: AfOr95 312 387 . KQ414828.1 38535 38760 + 199 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38536 38760 199 + . gene_id 9 ; sequence AfOr95 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38536 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38536 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38536 38760 199 + . alignment_id 9 ; Query AfOr95 ; Align 38536 313 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr95 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 4 -> 68 Target range: 727 -> 919 5 : AspPheSerIleAsnLeuSerSerIlePheIleLysLeuMetGlyIleTrpMetAlaAsnGlyA : 26 |||.!.:!!:!:!.!:!!!!!:!!.!!!:!:!:|||:!!!!:|||.!!|||:!:|||:!! ! AspIleAlaValThrValThrAlaPheTyrLeuLysIleIleGlyPheTrpLeuAlaAspThrT 728 : GACATAGCGGTGACCGTTACGGCTTTCTACTTGAAAATTATCGGCTTCTGGTTAGCTGACACTT : 791 27 : rgSerGluLysCysValArgAsnValThrIleValTyrSerIleIleAlaLeuLeuPheGlyLe : 47 !..!|||||| |||... ... !!:!!!!|||.!! !|||:!!! !!.!:! yrGluGluLysArgArgArgLysPheAlaGlnAsnPheThrIlePheMetLeuValCysAlaVa 792 : ACGAGGAGAAacgtcgaagaaaattcgcgcAGAATTTCACGATATTTATGCTGGTGTGCGCTGT : 854 48 : uTrpLeuGlnIleThrAspMetTyrTyrSerTrpGlyAspPheSerGluCysIlePheSerMet : 68 ! :!!:!!! ! !|||!!:||||||!!!|||||||||||||||! ! !!||| !!|||!!: lValIleGluThrArgAspIleTyrTyrThrTrpGlyAspPheSerValSerIleValSerIle 855 : GGTAATTGAGACGAGGGATATCTATTACACCTGGGGTGATTTCAGCGTAAGTATAGTTTCAATT : 917 vulgar: AfOr95 4 68 . KQ414828.1 727 919 + 118 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 728 919 118 + . gene_id 10 ; sequence AfOr95 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 728 919 . + . KQ414828.1 exonerate:protein2genome:local exon 728 919 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 728 919 118 + . alignment_id 10 ; Query AfOr95 ; Align 728 5 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr95 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 1 -> 58 Target range: 7902 -> 8073 2 : GluLysAspAspPheSerIleAsnLeuSerSerIlePheIleLysLeuMetGlyIleTrpMe : 22 :!! ! ...|||.!.|||||||||||||||!.!.!!|||:!:::: !:!:|||:!:|||! LysAspSerAspIleSerIleAsnLeuSerLysPhePheLeuArgAsnValGlyLeuTrpAr 7903 : AAGGATTCGGACATATCGATCAACTTGTCGAAATTCTTCTTGCGCAATGTCGGCCTGTGGAG : 7963 23 : tAlaAsnGlyArgSerGluLysCysValArgAsnValThrIleValTyrSerIleIleAlaL : 43 !|||.!...!!.!:!!|||!!. !! !|||!!.!.! !:!!!.!|||!!!||| !: gAlaGluAsnHisAlaGluAsnArgLysArgLysAlaLeuValAlaTyrThrIleTrpAsnM 7964 : GGCTGAGAATCACGCGGAGAATCGTAAAAGGAAAGCGTTGGTCGCCTACACGATTTGGAACA : 8026 44 : euLeuPheGlyLeuTrpLeuGlnIleThrAspMetTyrTyrSerTrp : 58 !!!!!!!.!.!:!! !:!!:!!! ! !|||||||||!:!!!!||| etPheLeuAlaIleValValGluThrArgAspMetTyrPheThrTrp 8027 : TGTTTTTGGCCATAGTGGTTGAAACGAGAGATATGTATTTCACCTGG : 8073 vulgar: AfOr95 1 58 . KQ414828.1 7902 8073 + 108 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 7903 8073 108 + . gene_id 11 ; sequence AfOr95 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 7903 8073 . + . KQ414828.1 exonerate:protein2genome:local exon 7903 8073 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 7903 8073 108 + . alignment_id 11 ; Query AfOr95 ; Align 7903 2 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 644 Query range: 147 -> 394 Target range: 17818 -> 19903 148 : IleIleAlaAsnIleGlyLysAsnGluSerAsnArgGluLeuProPheAsnLeuTrpVal : 167 |||:!:||||||||||||||||||||||||.!.||| !||||||||||||:!!|||||| IleLeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpVal 17819 : ATTTTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTC : 17876 168 : AspPheProValGlyLeuSerProTyrPheGluIleLeuPheThrIleGln >>>> Ta : 185 :!!!!.|||:!!..!:!!!!!||||||!:!|||||| |||::::::||| AsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln++ 17877 : AACTTGCCATTATCAATGACGCCATATTACgaaataactttttcattaCAGgt....... : 17932 186 : rget Intron 1 >>>> IleLeuCysValTyrHisValGlyValCysTyrIleCysP : 198 110 bp ::!|||! !:!!||||||:!!|||||| !!|||.!!|||| ++ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysP 17933 : ..................aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgct : 18079 199 : heAspAsnLeuLeuCysIleValAsnLeuHisValAlaGlyGlnPheArgIleLeuGlnH : 218 ||||||||...|||||||||:!!|||||||||!.!||| !|||||||||:!!||||||: heAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnT 18080 : tcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAAT : 18139 219 : isArgLeuArgSerLeuSerSerAlaGluProGlyAspArgArgAspAlaArg{L} >> : 236 !!|||:!! !!:!:!!!!!..! !:!! :::|||:::::: ...{|} yrArgMetAlaAsnMetThrAspLeuLysAspLysGluArgLysGluArgAsn{L}-- 18140 : ACCGAATGGCGAATATGACCGATTTAAAGGacaaagagaggaaagagagaaat{a}tg.. : 18196 237 : >> Target Intron 2 >>>> {ys}LeuTyrAlaLysLeuLysSerCysValLeuH : 247 36 bp {||}! !||| ! ||||||..!! !:!! !! ++{ys}CysTyrAsnValLeuLysAspTyrIleArgG 18197 : .......................ag{AA}TGTTACAACGTTCTCAAAGATTATATCAGAC : 18262 248 : isHisGlnAlaLeuThrLysTyrCysLysGlnLeuGluAsnIlePheThrIleIleValL : 267 !.|||||| !|||! ! ||||||!!.:!!||||||!!.:!:|||!.!|||||||||| lnHisGlnAsnLeuIleAlaTyrCysAsnLysLeuGluLysValPheAsnIleIleValL 18263 : AGCATCAGAACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGTTCAATATCATTGTTC : 18322 268 : euGlyGlnValLeuPheLeuAlaValValIleCysLeuValGlyPheGlnLeuPheLeu : 287 ||||||||:!!|||.!.!!!::!:!!:!!|||||||||! !|||||||||:!!.!!:!! euGlyGlnLeuLeuMetPheSerMetLeuIleCysLeuAspGlyPheGlnIleLeuMet+ 18323 : TGGGGCAATTGTTAATGTTCAGCATGTTGATCTGTCTCGATGGATTTCAGATACTTATGg : 18382 288 : >>>> Target Intron 3 >>>> MetAspThrProAlaSerArgLysValSerLe : 297 975 bp :!!||||||.!!!!!! !::!:!!! !!! + ++AlaAsnThrProThrArgThrArgLeuIlePh 18383 : t.........................agGCAAATACACCTACCAGAACCCGACTGATTTT : 19387 298 : uValLeuAsnPheAlaGlyThrLeuCysGlnLeuLeuMetPheThrTyrSerCysAspAs : 317 !:!!!!!:!!.!.!.!!.! !:!!||||||||||||||||||||||||||||||||| eIlePheHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCy 19388 : CATCTTTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGCTGCGACTG : 19447 318 : pLeuIleGlnGluSerValLysValGlyAsnAlaIlePheSerGlyProTrpAlaSerLe : 337 !:!!|||::!||||||..!!....!!.!.!.|||:!:!:!||||||||||||.!! !|| sIleIleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyProTrpThrLeuLe 19448 : CATCATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGACACTTTT : 19507 338 : uProMetAspGluValGlyArgValLeuArgLysAsnLeuValIleValIleMetArgSe : 357 |||||||..!! !! !|||!:!:!!:!!||||||:!!|||:!!:!!|||||||||||||| uProMetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuValIleMetArgSe 19508 : ACCAATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCATGAGATC : 19567 358 : rHisArgValCysCysLeuThrAlaGlyLysPhePheProValSerLeuGluThrSerTh : 377 | ! ! !||||||||||||||| !! !|||||| !|||||||||||||||! !|| rSerValProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGluThrTyrTh 19568 : GAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAACGTACAC : 19627 378 : rAla >>>> Target Intron 4 >>>> IleLeuSerThrAlaMetSerTyrPhe : 387 |!.! 223 bp :!!|||||||||||| ||||||||| rGly++ ++ValLeuSerThrAlaAlaSerTyrPhe 19628 : AGGGgt.........................agGTTTTAAGCACCGCAGCCTCATACTTT : 19880 388 : ThrLeuLeuLysHisSerSer : 394 ||||||||||||!!.!!!||| ThrLeuLeuLysGlnArgSer 19881 : ACGTTGCTGAAGCAAAGATCA : 19903 vulgar: AfOr84 147 394 . KQ414828.1 17818 19903 + 644 M 37 111 5 0 2 I 0 106 3 0 2 M 51 153 S 0 1 5 0 2 I 0 32 3 0 2 S 1 2 M 50 150 5 0 2 I 0 971 3 0 2 M 92 276 5 0 2 I 0 219 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17819 19903 644 + . gene_id 1 ; sequence AfOr84 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17819 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17819 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18193 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18193 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18194 18195 . + . intron_id 2 ; splice_site "tg" KQ414828.1 exonerate:protein2genome:local intron 18194 18229 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 18228 18229 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 18230 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18230 18381 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19903 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19903 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17819 19903 644 + . alignment_id 1 ; Query AfOr84 ; Align 17819 148 111 ; Align 18040 185 153 ; Align 18232 237 150 ; Align 19357 287 276 ; Align 19856 379 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 495 Query range: 149 -> 399 Target range: 2879 -> 5271 150 : AlaAsnIleGlyLysAsnGluSerAsnArgGluLeuProPheAsnLeuTrpValAspPhePr : 170 |||!::||||||||||||||||||:!!||| !||| ! !!|||!!!|||:!!|||.!.|| AlaSerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuPr 2880 : GCAAgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCC : 2940 171 : oValGlyLeuSerProTyrPheGluIleLeuPheThrIleGln >>>> Target Intro : 185 |:!! !:!!!!!||||||:::||||||||||||||||||||| 406 bp oIleThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2941 : GATAACCATCACACCATactatgaaatattatttacgaTACAGgt................. : 2987 186 : n 1 >>>> IleLeuCysValTyrHisValGlyValCysTyrIleCysPheAspAsnLeuL : 202 |||!!! !:!! :!!||| !!:!! !!|||:!!|||.!!||||||!!!| ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheL 2988 : ........agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTC : 3442 203 : euCysIleValAsnLeuHisValAlaGlyGlnPheArgIleLeuGlnHisArgLeuArgSer : 222 |||||!!::!!|||||||||..!||| !||||||||||||||||||:!!|||||| !!:! euCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsn 3443 : TGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAAT : 3502 223 : LeuSerSerAlaGluProGlyAspArgArgAspAlaArgLysLeuTyrAlaLysLeuLysSe : 243 :!!!!!.!!|||.!. ! !!... ::: ::::::||| :!!!!.! ! ! .. ValCysGlyAlaAsnGluArgSerAspLysIleSerLysLysThrProSerAsnSerAspGl 3503 : GTGTGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTCGGACGA : 3565 244 : rCysValLeuHisHisGlnAlaLeuThrLysTyrCysLysGlnLeuGluAsnIlePheThrI : 264 !||| ! ! ! !:!! !! !! !:!! ! !:!! !||| !.!. !! !!.!! uCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnL 3566 : ATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACA : 3628 265 : leIleValLeuGlyGlnValLeuPheLeuAlaValValIleCysLeuValGlyPheGlnLeu : 284 !:!! ! !! ! ! !:!!|||:!! !!.! !:!:! ||| !!.!!!!. !:!! ysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeuLeuMet 3629 : AACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATG : 3688 285 : PheLeuMetAspThrProAlaSer >>>> Target Intron 2 >>>> ArgLysVal : 295 ! !||| ! ! !!.!! ! 478 bp ||| :!! CysLeuAspGlyTyrLeuValMet++ ++Arg---Leu 3689 : TGCCTCGATGGATATTTGGTGATGgt.........................agCGC---CTT : 4196 296 : SerLeuValLeuAsnPheAlaGlyThrLeuCysGlnLeuLeuMetPheThrTyrSerCysAs : 316 !!!!!!:!!!!!:!!.!..!!||| !||||||||||||||||||||||||||||||||||| ThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAs 4197 : ACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGATGTTCACCTACAGCTGCGA : 4259 317 : pAspLeuIleGlnGluSerValLysValGlyAsnAlaIlePheSerGlyProTrpAlaSerL : 337 | !||||||!:!||||||:!!!!.|||!.!|||||||||!:!..! !! !!||| ! !| pCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIleTyrAspCysSerTrpIleHisL 4260 : TTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATATACGACTGCTCGTGGATTCACT : 4322 338 : euProMetAspGluValGlyArgValLeuArgLysAsnLeuValIleValIleMetArgSer : 357 |||||||||||..! !||||||:!!|||||||||:!!|||..!.!!|||||| |||||| euProMetAspArgSerGlyArgMetLeuArgLysAspLeuThrPheValIleGlyArgSer 4323 : TGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCT : 4382 358 : HisArgValCysCysLeuThrAlaGlyLysPhePheProValSerLeuGluThrSerThrAl : 378 ... ! !||||||||||||||| !! !||||||||||||||||||||||||! !|||:! ArgValProCysCysLeuThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSe 4383 : AGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTC : 4445 379 : a >>>> Target Intron 3 >>>> IleLeuSerThrAlaMetSerTyrPheThrLe : 389 ! 761 bp ||||||||||||||| !|||||||||||||| r++ ++IleLeuSerThrAlaAlaSerTyrPheThrLe 4446 : Ggt.........................agATTTTAAGTACCGCAGCGTCATACTTCACACT : 5239 390 : uLeuLysHisSerSerLeuGluLysMetGlu : 399 ||||::!:!!..!..! !|||! !:!:||| uLeuArgAsnGlnGluAlaGluIleValGlu 5240 : GCTACGAAACCAAGAAGCAGAAATAGTTGAA : 5271 vulgar: AfOr84 149 399 . KQ414828.1 2879 5271 + 495 M 35 105 5 0 2 I 0 402 3 0 2 M 108 324 5 0 2 I 0 474 3 0 2 M 1 3 G 1 0 M 84 252 5 0 2 I 0 757 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2880 5271 495 + . gene_id 2 ; sequence AfOr84 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2880 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2880 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4192 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4191 4192 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4193 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4193 4447 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 5208 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 5207 5208 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 5209 5271 . + . KQ414828.1 exonerate:protein2genome:local exon 5209 5271 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2880 5271 495 + . alignment_id 2 ; Query AfOr84 ; Align 2880 150 105 ; Align 3391 185 324 ; Align 4193 293 3 ; Align 4196 295 252 ; Align 5209 379 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 377 Query range: 233 -> 394 Target range: 32978 -> 34307 234 : AlaArgLysLeuTyrAlaLysLeuLysSerCysValLeuHisHisGlnAlaLeuThrLys : 253 :!!..!|||! !||| !|||!!!|||!:!|||:!!! !!!.|||||||||||| ::: SerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGlu 32979 : TCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTaattgaa : 33036 254 : TyrCysLysGlnLeuGluAsnIlePheThrIleIleValLeuGlyGlnValLeuPheLeu : 273 :::|||::: ||||||.!.:!!||||||:!!|||||||||||||||||||||.!.!!! PheCysGluIleLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMetPhe 33037 : ttttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTAATGTTT : 33096 274 : AlaValValIleCysLeuValGlyPheGlnLeuPheLeu >>>> Target Intron : 287 ::!:!!:!!||||||!!!!.!|||!:!:!!:!!.!!||| 406 bp SerIleIleIleCysPheAlaGlyTyrGluValLeuLeu++ 33097 : AGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGgt................... : 33140 288 : 1 >>>> MetAspThrProAlaSerArgLysValSerLeuValLeuAsnPheAlaGlyT : 304 !!: !||| !..! !:::|||:!!!!!..!! ! !!!. ! ! ++IleThrLeuProPheGluSerArgValAlaPheThrCysPheLeuIleThrG 33141 : ......agATAACGTTACCATTTGAATCGCGCGTTGCTTTCACGTGCTTCTTGATTACGG : 33595 305 : hrLeuCysGlnLeuLeuMetPheThrTyrSerCysAspAspLeuIleGlnGluSerValL : 324 !:!! !!||||||! !||||||||||||||||||:!! !:!!! ! !||||||:!!! lyValSerGlnLeuTrpMetPheThrTyrSerCysAsnCysIleThrThrGluSerLeuA 33596 : GCGTGAGTCAACTATGGATGTTCACGTACAGTTGCAATTGCATAACAACAGAAAGCCTGA : 33655 325 : ysValGlyAsnAlaIlePheSerGlyProTrpAlaSerLeuProMetAspGluValGlyA : 344 !.:!!!.!.!.:!!:!:!:!:!!||||||||| !!:!||||||||||||::: |||: snIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyL 33656 : ACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATggataaatttggaa : 33715 345 : rgValLeuArgLysAsnLeuValIleValIleMetArgSerHisArgValCysCysLeuT : 364 :::::|||||||||:!!||| !:!::!!|||:!!|||:!!...||| !! !..!|||| ysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerAlaLeuT 33716 : aactgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGA : 33775 365 : hrAlaGlyLysPhePheProValSerLeuGluThrSerThrAla >>>> Target In : 379 ||||| !! !|||||| !!:!!!!!|||||||||! !||| ! 440 hrAlaCysGlyPhePheSerIleThrLeuGluThrPheThrLys++ 33776 : CTGCCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTACTAAGgt.............. : 33822 380 : tron 2 >>>> IleLeuSerThrAlaMetSerTyrPheThrLeuLeuLysHisSerSe : 394 bp |||:!!||||||:!!||||||||||||||||||||||||!!.|||:! ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnSerAl 33823 : ...........agATCATGAGTACATCAATGTCGTATTTCACCCTACTAAAACAAAGTGC : 34305 395 : r : 394 ! a 34306 : C : 34307 vulgar: AfOr84 233 394 . KQ414828.1 32978 34307 + 377 M 53 159 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32979 34307 377 + . gene_id 3 ; sequence AfOr84 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32979 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32979 33137 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 2 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34307 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34307 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32979 34307 377 + . alignment_id 3 ; Query AfOr84 ; Align 32979 234 159 ; Align 33544 287 276 ; Align 34260 379 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 345 Query range: 233 -> 393 Target range: 11005 -> 13149 234 : AlaArgLysLeuTyrAlaLysLeuLysSerCysValLeuHisHisGlnAlaLeuThrLys : 253 .!!|||!:!! !|||! !|||!!!||||||! !|||! !!!.||||||.!!|||! ! ! ThrArgArgSerTyrGluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAsp 11006 : ACACGTAGATCTTACGAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGAT : 11063 254 : TyrCysLysGlnLeuGluAsnIlePheThrIleIleValLeuGlyGlnValLeuPheLeu : 273 |||! !:!!:!!||||||:!!:!!!:!|||! !|||:!!|||||||||||||||.!.!!! TyrTyrGluLysLeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPhe 11064 : TATTACGAGAAGCTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTC : 11123 274 : AlaValValIleCysLeuValGlyPheGlnLeuPheLeu >>>> Target Intron : 287 ::!|||:!!||||||||| !!|||!:!|||:!!!!.||| 1305 bp SerValLeuIleCysLeuPheGlyTyrGlnIleLeuLeu++ 11124 : AGTGTGTTAATTTGCCTCTTTGGTTATCAGATATTATTGgt................... : 11167 288 : 1 >>>> MetAspThrProAlaSerArgLysValSerLeuValLeuAsnPheAlaGlyT : 304 :!!||| !! !:!!|||::: !! !!!!:!!!!! !.!...!|||. ++AlaAsnThrSerLeuAlaArgArgSerIlePheMetPheLeuIleCysGlyA 11168 : ......agGCTAATACTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCG : 12521 305 : hrLeuCysGlnLeuLeuMetPheThrTyrSerCysAspAspLeuIleGlnGluSerValL : 324 !!:!! ! !|||!!!||||||||||||||||||:!! :!!|||:!!:!!|||! !! laMetValLeuLeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspA 12522 : CCATGGTTTTATTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATA : 12581 325 : ysValGlyAsnAlaIlePheSerGlyProTrpAlaSerLeuProMetAspGluValGlyA : 344 !.:!!!.! !||| !:!|||!.!! !|||.!!.!!:!!||||||:!!:!!..!|||! snIleAlaPheAlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyL 12582 : ATATTGCTTTTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCA : 12641 345 : rgValLeuArgLysAsnLeuValIleValIleMetArgSerHisArgValCysCysLeuT : 364 :! !|||||| ! :!!|||:!!!!:|||||| !||||||...|||||||||||||||| ysLysLeuArgHisAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuT 12642 : AAAAGCTACGGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGA : 12701 365 : hrAlaGlyLysPhePheProValSerLeuGluThrSerThr--{A} >>>> Target : 378 |||||..! !||||||||||||||||||||||||! !|||##{!} 35 hrAlaAsnGlyPhePheProValSerLeuGluThrTyrThr##{G}++ 12702 : CTGCGAATGGATTTTTCCCTGTGTCCTTAGAAACTTATACTAC{G}gt............ : 12748 379 : Intron 2 >>>> {la}IleLeuSerThrAlaMetSerTyrPheThrLeuLeuLysHi : 392 7 bp { !}||||||||||||||| !||||||||||||||||||!:!:! +-{lu}IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAs 12749 : .............ac{ag}attttgAGTACCGCGGCGTCGTACTTCACATTATTGAGAAA : 13144 393 : sSer : 393 !!:! nAsn 13145 : TAAC : 13149 vulgar: AfOr84 233 393 . KQ414828.1 11005 13149 + 345 M 53 159 5 0 2 I 0 1301 3 0 2 M 91 273 F 0 2 S 0 1 5 0 2 I 0 353 3 0 2 S 1 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 11006 13149 345 + . gene_id 4 ; sequence AfOr84 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 11006 11164 . + . KQ414828.1 exonerate:protein2genome:local exon 11006 11164 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 11165 11166 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 11165 12469 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12468 12469 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 12470 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12745 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13102 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13101 13102 . + . intron_id 1 ; splice_site "ac" KQ414828.1 exonerate:protein2genome:local cds 13103 13149 . + . KQ414828.1 exonerate:protein2genome:local exon 13103 13149 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 11006 13149 345 + . alignment_id 4 ; Query AfOr84 ; Align 11006 234 159 ; Align 12470 287 273 ; Align 13105 379 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 311 Query range: 229 -> 379 Target range: 22887 -> 23829 230 : AspArgArgAspAlaArgLysLeuTyrAlaLysLeuLysSerCysValLeuHisHisGln : 249 |||..! ! !!:!!..!|||! !||| !|||!!!|||!:!|||:!!! !!!.|||||| AspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGln 22888 : GATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAG : 22945 250 : AlaLeuThrLysTyrCysLysGlnLeuGluAsnIlePheThrIleIleValLeuGlyGln : 269 ||||||! !:!!!:!||| ! !||||||.!.:!!||||||:!!||||||||||||||| AlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleValLeuGlyGln 22946 : GCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAA : 23005 270 : ValLeuPheLeuAlaValValIleCysLeuValGlyPheGlnLeuPheLeuMetAspThr : 289 ||||||.!.! !::!:!!:!!||||||!!!:!!|||!:!|||:!!.!!|||:!!..!! ! ValLeuMetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeuValSerIle 23006 : GTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGGTGAGTATC : 23065 290 : ProAlaSer{A} >>>> Target Intron 1 >>>> {rg}LysValSerLeuVal : 298 !::!! !{!} 492 bp { !}:::|||:!!!!!!.! GluSerTyr{T}-+ +-{hr}ArgValAlaPheAla 23066 : GAAAGCTAT{A}at.........................at{CG}CGCGTTGCTTTCGCG : 23584 299 : LeuAsnPheAlaGlyThrLeuCysGlnLeuLeuMetPheThrTyrSerCysAspAspLeu : 318 ! ! !!!. ! ! !:!! !!||||||! !||||||||||||||||||||| !:!! CysPheLeuMetMetGlyMetSerGlnLeuTrpMetPheThrTyrSerCysAspCysIle 23585 : TGCTTCTTGATGATGGGCATGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCATA : 23644 319 : IleGlnGluSerValLysValGlyAsnAlaIlePheSerGlyProTrpAlaSerLeuPro : 338 ! ! !||||||:!!!!.:!!!.!.!.:!!:!:!:!:!!||||||||| !!:!|||||| ThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuPro 23645 : ACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCA : 23704 339 : MetAspGluValGlyArgValLeuArgLysAsnLeuValIleValIleMetArgSerHis : 358 ||||||:!! !!|||!:!:!!|||||||||.!.||| !!!::!!|||:!!|||:!!... MetAspLysPheGlyLysLeuLeuArgLysGluLeuGlnMetLeuIleLeuArgAlaArg 23705 : ATGGACAAATTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGGGCGAGA : 23764 359 : ArgValCysCysLeuThrAlaGlyLysPhePheProValSerLeuGluThrSerThrAla : 378 ||| !! !..!||||||||| !! !|||||| !!:!!||||||||||||! !||| ! ArgProSerAlaLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys 23765 : CGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAG : 23824 379 : Ile : 379 :!! Val 23825 : GTA : 23829 vulgar: AfOr84 229 379 . KQ414828.1 22887 23829 + 311 M 63 189 S 0 1 5 0 2 I 0 488 3 0 2 S 1 2 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22888 23829 311 + . gene_id 5 ; sequence AfOr84 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22888 23077 . + . KQ414828.1 exonerate:protein2genome:local exon 22888 23077 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23078 23079 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 23078 23569 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 23568 23569 . + . intron_id 0 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local cds 23570 23829 . + . KQ414828.1 exonerate:protein2genome:local exon 23570 23829 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22888 23829 311 + . alignment_id 5 ; Query AfOr84 ; Align 22888 230 189 ; Align 23572 294 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 243 Query range: 293 -> 391 Target range: 28526 -> 29230 294 : LysValSerLeuValLeuAsnPheAlaGlyThrLeuCysGlnLeuLeuMetPheThrTyr : 313 :::|||:!!|||!.!! ! !! ! ! !:!! !!||||||! !|||||||||||| ArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuTrpMetPheThrTyr 28527 : CGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTATGGATGTTCACGTAC : 28584 314 : SerCysAspAspLeuIleGlnGluSerValLysValGlyAsnAlaIlePheSerGlyPro : 333 ||||||||| !:!!! ! !||||||:!!!!.:!!!.!.!.:!!:!!!:!:!!|||||| SerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyPro 28585 : AGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCA : 28644 334 : TrpAlaSerLeuProMetAspGluValGlyArgValLeuArgLysAsnLeuValIleVal : 353 ||| !!:!||||||||||||::: |||::::::|||||||||:!!||| !:!::!! TrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeu 28645 : TGGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTC : 28704 354 : IleMetArgSerHisArgValCysCysLeuThrAlaGlyLysPhePheProValSerLeu : 373 |||:!!|||:!!...||| !! !! !||||||||| !! !|||||| !!:!!|||||| IleLeuArgAlaArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeu 28705 : ATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTC : 28764 374 : GluThrSerThrAla >>>> Target Intron 1 >>>> IleLeuSerThrAlaM : 384 ||||||! !||| ! 410 bp |||:!!||||||:!!| GluThrPheThrLys++ ++IleMetSerThrSerM 28765 : GAAACCTTTACTAAGgt.........................agATCATGAGTACATCAA : 29207 385 : etSerTyrPheThrLeuLeuLys : 391 ||||||||||||||||||||||| etSerTyrPheThrLeuLeuLys 29208 : TGTCGTATTTCACATTATTAAAA : 29230 vulgar: AfOr84 293 391 . KQ414828.1 28526 29230 + 243 M 85 255 5 0 2 I 0 406 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28527 29230 243 + . gene_id 6 ; sequence AfOr84 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 28527 28781 . + . KQ414828.1 exonerate:protein2genome:local exon 28527 28781 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 28782 28783 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 28782 29191 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 29190 29191 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 29192 29230 . + . KQ414828.1 exonerate:protein2genome:local exon 29192 29230 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28527 29230 243 + . alignment_id 6 ; Query AfOr84 ; Align 28527 294 255 ; Align 29192 379 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 231 Query range: 147 -> 224 Target range: 37450 -> 37988 148 : IleIleAlaAsnIleGlyLysAsnGluSerAsnArgGluLeuProPheAsnLeuTrpVal : 167 ||| ||||||:!!|||||||||||||||:!!||||||! ! !!:!:!!:!!|||:!! IleSerAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 37451 : atttcagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 37508 168 : AspPheProValGlyLeuSerProTyrPheGluIleLeuPheThrIleGln >>>> Ta : 185 |||.!.|||:!!..!:!!!!!||||||:::|||||| ::!! !|||||| AspLeuProLeuSerIleThrProTyrTyrGluIleThrTyrIleIleGln++ 37509 : GATCTACCATTATCCATAACAccatattatgaaattacttACATAATACAGgt....... : 37564 186 : rget Intron 1 >>>> IleLeuCysValTyrHisValGlyValCysTyrIleCysP : 198 307 bp !|||! !||||||!!.|||.!!!.!||||||:!!|||| ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysP 37565 : ..................agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCt : 37908 199 : heAspAsnLeuLeuCysIleValAsnLeuHisValAlaGlyGlnPheArgIleLeuGlnH : 218 ||||| :::... |||::: |||||||||||||||||||||||||||||||||: heAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnT 37909 : ttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAAT : 37968 219 : isArgLeuArgSerLeuSer : 224 !!|||:!! !!:!:!!||| yrArgIleAlaAsnValSer 37969 : ACAGAATTGCCAATGTGTCA : 37988 vulgar: AfOr84 147 224 . KQ414828.1 37450 37988 + 231 M 37 111 5 0 2 I 0 303 3 0 2 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37451 37988 231 + . gene_id 7 ; sequence AfOr84 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37451 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37451 37561 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 37988 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 37988 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37451 37988 231 + . alignment_id 7 ; Query AfOr84 ; Align 37451 148 111 ; Align 37869 185 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 201 Query range: 304 -> 379 Target range: 38535 -> 38760 305 : LeuCysGlnLeuLeuMetPheThrTyrSerCysAspAspLeuIleGlnGluSerValLys : 324 :!! !!||||||! !||||||||||||||||||||| !:!!! ! !||||||:!!!!. ValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsn 38536 : GTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAAC : 38593 325 : ValGlyAsnAlaIlePheSerGlyProTrpAlaSerLeuProMetAspGluValGlyArg : 344 :!!!.!.!.:!!:!!!:!:!!||||||||| !!:!||||||||||||::: |||::: IleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLys 38594 : ATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaa : 38653 345 : ValLeuArgLysAsnLeuValIleValIleMetArgSerHisArgValCysCysLeuThr : 364 :::|||||||||:!!||| !:!::!!|||:!!|||:!!...||| !! !! !|||||| LeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThr 38654 : ctgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACT : 38713 365 : AlaGlyLysPhePheProValSerLeuGluThrSerThrAlaIle : 379 ||| !! !|||||| !!:!!||||||||||||! !||| !:!! AlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 38714 : GCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 38760 vulgar: AfOr84 304 379 . KQ414828.1 38535 38760 + 201 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38536 38760 201 + . gene_id 8 ; sequence AfOr84 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38536 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38536 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38536 38760 201 + . alignment_id 8 ; Query AfOr84 ; Align 38536 305 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 198 Query range: 147 -> 224 Target range: 32386 -> 32924 148 : IleIleAlaAsnIleGlyLysAsnGluSerAsnArgGluLeuProPheAsnLeuTrpVal : 167 |||:::||||||:!!|||||||||||||||:!!||||||! ! !!:!:!!:!!|||:!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 32387 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 32444 168 : AspPheProValGlyLeuSerProTyrPheGluIleLeuPheThrIleGlnIleLeuCys : 187 |||.!.|||:!!..!:!!!!!||||||:::|||||| ::!! !||||||:!!||| AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 32445 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 32504 188 : ValTyrHisValGly{V} >>>> Target Intron 1 >>>> {al}CysTyrIle : 196 :!!!:! ! {:} 307 bp {!!}||||||:!! IlePheSerArgGln{M}-+ ++{et}CysTyrLeu 32505 : ATTTTCTCAAGGCaa{a}ct.........................ag{TG}TGTTACCTT : 32838 197 : CysPheAspAsnLeuLeuCysIleValAsnLeuHisValAlaGlyGlnPheArgIleLeu : 216 ||||||||||||:::... |||::: !|||||||||||||||||||||||||||||| CysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeu 32839 : TGCTttgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTA : 32898 217 : GlnHisArgLeuArgSerLeuSer : 224 |||:!!|||:!! !!:!:!!||| GlnTyrArgIleAlaAsnValSer 32899 : CAATACAGAATTGCCAATGTGTCA : 32924 vulgar: AfOr84 147 224 . KQ414828.1 32386 32924 + 198 M 45 135 S 0 1 5 0 2 I 0 303 3 0 2 S 1 2 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32387 32924 198 + . gene_id 9 ; sequence AfOr84 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32387 32522 . + . KQ414828.1 exonerate:protein2genome:local exon 32387 32522 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32523 32524 . + . intron_id 1 ; splice_site "ct" KQ414828.1 exonerate:protein2genome:local intron 32523 32829 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32828 32829 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32830 32924 . + . KQ414828.1 exonerate:protein2genome:local exon 32830 32924 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32387 32924 198 + . alignment_id 9 ; Query AfOr84 ; Align 32387 148 135 ; Align 32832 194 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 3 -> 68 Target range: 715 -> 910 4 : ThrGlySerArgAspIleSerIleIleTrpThrSerPheLeuMetLysIleValGlyLeuTrpL : 25 :!!..!!:!|||||||||:!!:!:! ! |||:!!|||! !:!!||||||:!!|||!!!|||| SerAsnAsnArgAspIleAlaValThrValThrAlaPheTyrLeuLysIleIleGlyPheTrpL 716 : TCGAATAACAGGGACATAGCGGTGACCGTTACGGCTTTCTACTTGAAAATTATCGGCTTCTGGT : 779 26 : euAlaAlaAspArgCysGluGlnArgArgArgAspPheAlaLeuIleTyrThrValGlyAlaLe : 46 |||||! ! ! ! |||:!:||||||||| |||||| !! !!:!|||:!! ! !|| euAlaAspThrTyrGluGluLysArgArgArgLysPheAlaGlnAsnPheThrIlePheMetLe 780 : TAGCTGACACTTACGAGGAGAAacgtcgaagaaaattcgcgcAGAATTTCACGATATTTATGCT : 842 47 : uPheIleIleValCysIleGlyPheArgAspIleTyrPheThrTrpGlyAsnPheSerAspSer : 67 | ! ! !||| |||! ! ||||||||||||!:!|||||||||:!!||||||! ||| uValCysAlaValValIleGluThrArgAspIleTyrTyrThrTrpGlyAspPheSerValSer 843 : GGTGTGCGCTGTGGTAATTGAGACGAGGGATATCTATTACACCTGGGGTGATTTCAGCGTAAGT : 905 68 : Val : 68 :!! Ile 906 : ATA : 910 vulgar: AfOr84 3 68 . KQ414828.1 715 910 + 156 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 716 910 156 + . gene_id 10 ; sequence AfOr84 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 716 910 . + . KQ414828.1 exonerate:protein2genome:local exon 716 910 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 716 910 156 + . alignment_id 10 ; Query AfOr84 ; Align 716 4 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 229 -> 298 Target range: 38030 -> 38237 230 : AspArgArgAspAlaArgLysLeuTyrAlaLysLeuLysSerCysValLeuHisHisGln : 249 |||..! ! !!:!!..!|||! !||| !|||!!!|||!:!|||:!!! !!!.|||||| AspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGln 38031 : GATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAG : 38088 250 : AlaLeuThrLysTyrCysLysGlnLeuGluAsnIlePheThrIleIleValLeuGlyGln : 269 ||||||! !:!!!:!||| ! !||||||.!.:!!||||||:!!|||!.!||||||||| AlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGln 38089 : GCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAA : 38148 270 : ValLeuPheLeuAlaValValIleCysLeuValGlyPheGlnLeuPheLeuMetAspThr : 289 ||||||.!.!!!::!:!!:!!||||||!!!|||! !!:!||| !.!!|||:!!..!! ! ValLeuMetPheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeuValSerIle 38149 : GTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGGTGAGTATC : 38208 290 : ProAlaSerArgLysValSerLeuVal : 298 ! !! !!.!||| !|||:::::: ValArgTyrAsnLysTyrSerMetIle 38209 : GTTCGCTATAATAAATACTCTatgata : 38237 vulgar: AfOr84 229 298 . KQ414828.1 38030 38237 + 155 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38031 38237 155 + . gene_id 11 ; sequence AfOr84 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38031 38237 . + . KQ414828.1 exonerate:protein2genome:local exon 38031 38237 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38031 38237 155 + . alignment_id 11 ; Query AfOr84 ; Align 38031 230 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 7 -> 72 Target range: 15121 -> 15316 8 : AspIleSerIleIleTrpThrSerPheLeuMetLysIleValGlyLeuTrpLeuAlaAla : 27 ||||||||||||! ! !|||||| !!!!!|||||||||||||||||||||:!!|||:!! AspIleSerIleSerLeuThrSerValPheMetLysIleValGlyLeuTrpMetAlaSer 15122 : GACATATCAATCAGCCTGACGTCCGTTTTCATGAAGATCGTTGGACTGTGGATGGCGTCG : 15179 28 : AspArgCysGluGlnArgArgArgAspPheAlaLeuIleTyrThrValGlyAlaLeuPhe : 47 :!!|||! !||||||||| !|||:!!.!!.!!||| !||||||:!! !|||:!!.!! AsnArgPheGluGlnArgValArgAsnIleThrLeuCysTyrThrLeuIleAlaIleLeu 15180 : AACCGTTTCGAGCAACGAGTACGAAATATCACGCTGTGTTACACGCTGATCGCGATTCTC : 15239 48 : IleIleValCysIleGlyPheArgAspIleTyrPheThrTrpGlyAsnPheSerAspSer : 67 .!! !:!!!! ||| !.!.! !|||:!:|||!:!:!!||||||:!!|||.!!! ||| PheAlaLeuTrpIleGlnMetThrAspLeuTyrTyrSerTrpGlyAspPheGlyValSer 15240 : TTCGCCCTGTGGATACAAATGACGGATTTGTATTACTCGTGGGGAGATTTTGGTGTAAGT : 15299 68 : ValTyrIleSerCys : 72 !.! !! !||| AlaArgGlyIleCys 15300 : GCGAGGGGAATTTGT : 15316 vulgar: AfOr84 7 72 . KQ414828.1 15121 15316 + 152 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15122 15316 152 + . gene_id 12 ; sequence AfOr84 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 15122 15316 . + . KQ414828.1 exonerate:protein2genome:local exon 15122 15316 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15122 15316 152 + . alignment_id 12 ; Query AfOr84 ; Align 15122 8 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 187 -> 227 Target range: 10840 -> 10960 188 : ValTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLeuCysIleValAsnLeu : 207 :!!||| !..!|||:!!||||||.!!||||||||||||:!!!!!||||||:!!!:!:!! LeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerVal 10841 : CTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTG : 10898 208 : HisValAlaGlyGlnPheArgIleLeuGlnHisArgLeuArgSerLeuSerSerAlaGlu : 227 |||:!!::!|||||||||||||||||||||:!!||||||! !!.!||||||..!!.!:!! HisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGln 10899 : CATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAA : 10958 vulgar: AfOr84 187 227 . KQ414828.1 10840 10960 + 142 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10841 10960 142 + . gene_id 13 ; sequence AfOr84 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 10841 10960 . + . KQ414828.1 exonerate:protein2genome:local exon 10841 10960 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10841 10960 142 + . alignment_id 13 ; Query AfOr84 ; Align 10841 188 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 147 -> 224 Target range: 22307 -> 22845 148 : IleIleAlaAsnIleGlyLysAsnGluSerAsnArgGluLeuProPheAsnLeuTrpVal : 167 |||:::||||||:!!|||||||||||||||:!!||||||! ! !!:!:!!:!!|||:!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 22308 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 22365 168 : AspPheProValGlyLeuSerProTyrPheGluIleLeuPhe >>>> Target Intr : 182 |||.!.|||:!!..!:!!!!!||||||:::|||||| ::! 316 bp AspLeuProLeuSerValThrProTyrTyrGluIleThrTyr-+ 22366 : GATCTACCATTATCCGTAACAccatattatgaaattacttACat................ : 22412 183 : on 1 >>>> ThrIleGlnIleLeuCysValTyrHisValGlyValCysTyrIleCysP : 198 .!!:!!...:!:! ! ||| ! ! !:!!||| | ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCys---------P 22413 : .........agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGC---------t : 22765 199 : heAspAsnLeuLeuCysIleValAsnLeuHisValAlaGlyGlnPheArgIleLeuGlnH : 218 ||||| :::... |||::: |||||||||||||||||||||||||||||||||: heAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnT 22766 : ttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAAT : 22825 219 : isArgLeuArgSerLeuSer : 224 !!|||:!! !!:!:!!||| yrArgIleAlaAsnValSer 22826 : ACAGAATTGCCAATGTGTCA : 22845 vulgar: AfOr84 147 224 . KQ414828.1 22307 22845 + 142 M 34 102 5 0 2 I 0 312 3 0 2 M 13 39 G 3 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22308 22845 142 + . gene_id 14 ; sequence AfOr84 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22308 22409 . + . KQ414828.1 exonerate:protein2genome:local exon 22308 22409 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22410 22411 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 22410 22725 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 22845 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 22845 . + . insertions 0 ; deletions 3 KQ414828.1 exonerate:protein2genome:local similarity 22308 22845 142 + . alignment_id 14 ; Query AfOr84 ; Align 22308 148 102 ; Align 22726 182 39 ; Align 22765 198 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 6 -> 67 Target range: 31123 -> 31306 7 : ArgAspIleSerIleIleTrpThrSerPheLeuMetLysIleValGlyLeuTrpLeuAla : 26 !:!|||:!!|||.!!! !! .!!!:!|||!!!:!! ! :!!||||||!!!|||!!!||| GlnAspValSerPheArgLeuAlaAsnPhePheLeuTyrValValGlyPheTrpPheAla 31124 : CAAGACGTTTCCTTTAGATTAGCCAACTTTTTTCTGTATGTTGTCGGCTTCTGGTTCGCC : 31181 27 : AlaAspArgCysGluGlnArgArgArgAspPheAlaLeuIleTyrThrValGlyAlaLeu : 46 |||:!!||| |||:!! !! !|||:!! !|||:!!:!:||||||:!!! !.!!:!! AlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeuTyrThrIleValThrVal 31182 : GCTAATCGTATAGAGGAATGGTTCAGAAACGCTGCGATTCTGTATACCATTGTCACGGTC : 31241 47 : PheIleIleValCysIleGlyPheArgAspIleTyrPheThrTrpGlyAsnPheSerAsp : 66 |||.!!:!!:!!!! :!! !.!.|||! :!!||||||:!!||||||||||||..!! PhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSerTrpGlyAsnPheGluVal 31242 : TTCTTTGTCATGTGGCTTCAGCTGAGAGGGCTTTATTTCTCCTGGGGAAACTTTGAAGTA : 31301 67 : Ser : 67 ||| Ser 31302 : AGT : 31306 vulgar: AfOr84 6 67 . KQ414828.1 31123 31306 + 137 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31124 31306 137 + . gene_id 15 ; sequence AfOr84 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 31124 31306 . + . KQ414828.1 exonerate:protein2genome:local exon 31124 31306 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31124 31306 137 + . alignment_id 15 ; Query AfOr84 ; Align 31124 7 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 6 -> 67 Target range: 21048 -> 21231 7 : ArgAspIleSerIleIleTrpThrSerPheLeuMetLysIleValGlyLeuTrpLeuAla : 26 !:!|||:!!|||:!!! !! .!!!:!|||! !:!! ! :!!||||||!!!|||!!!||| GlnAspValSerValArgLeuAlaAsnPheTyrLeuTyrValValGlyPheTrpPheAla 21049 : CAAGACGTTTCCGTTAGATTAGCCAATTTTTATCTGTATGTCGTCGGCTTCTGGTTCGCC : 21106 27 : AlaAspArgCysGluGlnArgArgArgAspPheAlaLeuIleTyrThrValGlyAlaLeu : 46 |||:!!||| |||:!! !! ! !!:!! |||:!!:!:||||||:!!! !.!!:!! AlaAsnArgIleGluGluTrpPheGlyAsnAlaAlaIleLeuTyrThrIleValThrVal 21107 : GCTAATCGTATAGAGGAATGGTTCGGAAACGCGGCGATTCTGTATACCATTGTCACGGTC : 21166 47 : PheIleIleValCysIleGlyPheArgAspIleTyrPheThrTrpGlyAsnPheSerAsp : 66 |||.!!:!!:!!!! :!! !.!.|||! :!!||||||:!!||||||||||||..!! PhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSerTrpGlyAsnPheGluVal 21167 : TTCTTTGTCATGTGGCTTCAGCTGAGAGGACTTTATTTCTCCTGGGGAAACTTTGAAGTA : 21226 67 : Ser : 67 ||| Ser 21227 : AGT : 21231 vulgar: AfOr84 6 67 . KQ414828.1 21048 21231 + 132 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21049 21231 132 + . gene_id 16 ; sequence AfOr84 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 21049 21231 . + . KQ414828.1 exonerate:protein2genome:local exon 21049 21231 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21049 21231 132 + . alignment_id 16 ; Query AfOr84 ; Align 21049 7 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 147 -> 189 Target range: 27339 -> 27465 148 : IleIleAlaAsnIleGlyLysAsnGluSerAsnArgGluLeuProPheAsnLeuTrpVal : 167 |||:::||||||:!!|||||||||||||||:!!||||||! ! !|||:!!:!!||| !! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPhe 27340 : attttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTC : 27397 168 : AspPheProValGlyLeuSerProTyrPheGluIleLeuPheThrIleGlnIleLeuCys : 187 |||.!.|||:!!..!:!!!!!||||||:::|||||| ::!! !||||||:!!||| AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 27398 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 27457 188 : ValTyr : 189 :!!!:! IlePhe 27458 : ATTTTC : 27465 vulgar: AfOr84 147 189 . KQ414828.1 27339 27465 + 130 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27340 27465 130 + . gene_id 17 ; sequence AfOr84 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27340 27465 . + . KQ414828.1 exonerate:protein2genome:local exon 27340 27465 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27340 27465 130 + . alignment_id 17 ; Query AfOr84 ; Align 27340 148 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 0 -> 61 Target range: 7890 -> 8073 1 : MetArgProThrGlySerArgAspIleSerIleIleTrpThrSerPheLeuMetLysIleVa : 21 |||!:! !! ! !..! !||||||||||||! !! !:!!!.!|||!!!:!!:::! !|| MetGlnThrGluLysAspSerAspIleSerIleAsnLeuSerLysPhePheLeuArgAsnVa 7891 : ATGCAAACGGAGAAGGATTCGGACATATCGATCAACTTGTCGAAATTCTTCTTGCGCAATGT : 7951 22 : lGlyLeuTrpLeuAlaAlaAspArgCysGluGlnArgArgArgAspPheAlaLeuIleTyrT : 42 |||||||||| !|||! !:!!!.!...|||.!.|||!:!||| ! !:!! !|||| lGlyLeuTrpArgAlaGluAsnHisAlaGluAsnArgLysArgLysAlaLeuValAlaTyrT 7952 : CGGCCTGTGGAGGGCTGAGAATCACGCGGAGAATCGTAAAAGGAAAGCGTTGGTCGCCTACA : 8014 43 : hrValGlyAlaLeuPheIleIleValCysIleGlyPheArgAspIleTyrPheThrTrp : 61 ||:!! !! !:!!|||:!: !:!! :!!! ! ||||||!!:|||||||||||| hrIleTrpAsnMetPheLeuAlaIleValValGluThrArgAspMetTyrPheThrTrp 8015 : CGATTTGGAACATGTTTTTGGCCATAGTGGTTGAAACGAGAGATATGTATTTCACCTGG : 8073 vulgar: AfOr84 0 61 . KQ414828.1 7890 8073 + 124 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 7891 8073 124 + . gene_id 18 ; sequence AfOr84 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 7891 8073 . + . KQ414828.1 exonerate:protein2genome:local exon 7891 8073 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 7891 8073 124 + . alignment_id 18 ; Query AfOr84 ; Align 7891 1 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1230 Query range: 0 -> 405 Target range: 21030 -> 24205 1 : MetAsnLeuLysTyrArgLysAspLeuAlaPheThrValAlaSerPheTyrLeuArgVal : 20 |||!:!||||||||||||:!!|||:!!:!! !!! !:!!|||!:!||||||||| !||| MetSerLeuLysTyrArgGlnAspValSerValArgLeuAlaAsnPheTyrLeuTyrVal 21031 : ATGAGCTTGAAATATCGCCAAGACGTTTCCGTTAGATTAGCCAATTTTTATCTGTATGTC : 21088 21 : ValGlyPheTrpLeuThrThrSerArgLeuGluGluCysPheArgIleGlyValValGly : 40 ||||||||||||!!!.!!.!!!:!|||:!!||||||!! ||| !!! !!.!!.!:!! ! ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheGlyAsnAlaAlaIleLeu 21089 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCGGAAACGCGGCGATTCTG : 21148 41 : TyrThrIleLeuAlaIleThrPheSerAlaTrpValGlnIleArgGlyLeuTyrPheAsn : 60 |||||||||:!!.!!:!! !||| ! !|||:!!|||:!:|||||||||||||||::! TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSer 21149 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGACTTTATTTCTCC : 21208 61 : TrpGlyAspPheSer >>>> Target Intron 1 >>>> AlaCysThrTyrIleA : 71 ||||||:!!|||..! 666 bp ..!|||! !|||!!:| TrpGlyAsnPheGlu++ ++ValCysMetTyrMetA 21209 : TGGGGAAACTTTGAAgt.........................aggTTTGCATGTACATGG : 21907 72 : laCysAspGlyLeuGlyLeuValMetAspPhePheLysIlePheSerLeuPheIleHisG : 91 |||||:!!.!!|||!.!||||||:!!|||.!..!!||||||||| !|||.!!:!!!..: laCysAsnSerLeuAlaLeuValLeuAspIleIleLysIlePheValLeuLeuValArgL 21908 : CATGCAACAGTTTAGCCCTGGTTTTGGATATAATCAAGATTTTCGTCCTACTCGTACGGA : 21967 92 : lnLysLysPheLeuGlyLeuMetAlaTyrMetGlnLysAsnPheTrpHisTyrAspTyrA : 111 !!||||||||||||||||||!!:! !||||||||||||||||||||||||! :!!|||| ysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheTrpHisLeuAsnTyrA 21968 : AGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTTTGGCATTTGAACTACG : 22027 112 : spGluGluGluAsnLeuIleValLysAspThrLysLysThrThrAlaTyrPheValCysI : 131 ||:!!!!:||||||! !|||:!! ! !!.!!|||::!||| ! !||||||||||||: spGlnAspGluAsnSerIleIleAlaHisAlaLysArgThrCysIleTyrPheValCysV 22028 : ACCAGGACGAGAATTCTATTATCGCACACGCGAAACGAACGTGCATCTACTTCGTCTGCG : 22087 132 : leLeuThrPheSerSerLeuSerSerIlePheMetTyrMetPheArgProLeuLeu{T} : 150 !!!!!:!!|||!!!|||! !|||!!!:!!||| |||!!:.!.||||||!!!:!!{:} alPheSerPheCysSerGlnSerThrValPheSerTyrIleIleArgProPheVal{S}+ 22088 : TCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTATATAATAAGGCCATTTGTA{T}g : 22145 151 : >>>> Target Intron 2 >>>> {hr}AsnIleGlyArgAsnGluThrAspArgI : 160 170 bp {!!}|||:!!|||!:!||||||:!!|||||| + ++{er}AsnLeuGlyLysAsnGluSerAspArgG 22146 : t.........................ag{ca}AATCTTGGAAAGAATGAATCTGATAGAG : 22344 161 : leLeuIlePheAsnMetTyrLeuAspLeuProLeuSerIleSerProTyrTyrGluIleA : 180 !! !|||!:!:!!|||!::||||||||||||||||||:!!!!!|||||||||||||||. luHisIleTyrAspMetTrpLeuAspLeuProLeuSerValThrProTyrTyrGluIleT 22345 : AACATATATACGATATGTGGCTCGATCTACCATTATCCGTAACAccatattatgaaatta : 22404 181 : laTyrThrIleGln >>>> Target Intron 3 >>>> IleAlaAlaLeuAsnGl : 190 ..|||! !|||||| 307 bp ! !:!!:!! !!|| hrTyrIleIleGln++ ++AlaLeuSerValTyrGl 22405 : cttACATAATACAGgt.........................agGCTTTATCTGTGTACCA : 22741 191 : nAlaGlySerCysTyrPheCysPheAspAsnIlePheCysIleLeuCysLeuAsnValAl : 210 |!.!.!!:!!||||||.!!||||||||| |||||| ||||||||||||:!!||||| nValSerAlaCysTyrLeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAl 22742 : AGTTAGCGCGTGTTACCTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGC : 22801 211 : aCysGlnPheArgIleLeuGlnTyrArgIleAlaAsn<-><-><-><->AlaProIleLe : 226 | !!||||||||||||||||||||||||||||||||| ::! !|||:! aGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleVa 22802 : TGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGT : 22861 227 : uLysLysLysGluAsnLeuAspSerSerLysTyrProSerAspGluCysTyrAsnAlaPh : 246 !|||!..!..||||||! !..!!!!..!:!!! !|||!!::!!||||||! ! !|| lLysSerSerGluAsnProSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPh 22862 : GAAAAGCAGTGAAAATCCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTT : 22921 247 : eLysAsnTyrIleGlnGlnHisGlnAlaLeuLeuHisPheCysGluThrLeuGluGlnIl : 266 |||||||! !|||||||||||||||||||||:!!.!.||||||! !|||||||||:!!:! eLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluVa 22922 : TAAGAATTGCATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGT : 22981 267 : ePheThrIleIleValValGlyGlnIleLeuMetPheSerIleLeuPheCysPheLeuGl : 286 !||||||:!!||||||:!!||||||:!!||||||! !|||||||||.!!||||||:!!|| lPheThrValIleValLeuGlyGlnValLeuMetSerSerIleLeuIleCysPheIleGl 22982 : ATTCACGGTAATCGTACTCGGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGG : 23041 287 : yTyrGlnValIleLeu >>>> Target Intron 4 >>>> AlaAspLeuThrThr : 296 ||||||||||:!!||| 492 bp ! ! |||:!! ! yTyrGlnValLeuLeu++ ++IleLysLeuSerPhe 23042 : GTATCAAGTACTCCTGgt.........................agATAAAGTTATCATTT : 23563 297 : SerTyrArgValSerPheIleSerTyrLeuPheAlaGlyMetCysGlnLeuTrpMetPhe : 316 ..!! ||||||:!!||| !!!!:!|||.!. !|||||| !!||||||||||||||| GluSerArgValAlaPheAlaCysPheLeuMetMetGlyMetSerGlnLeuTrpMetPhe 23564 : GAATCGCGCGTTGCTTTCGCGTGCTTCTTGATGATGGGCATGAGTCAACTATGGATGTTC : 23623 317 : ThrTyrSerCysAspCysIleThrGlnGluSerAlaGluIleAlaSerAlaAlaTyrThr : 336 |||||||||||||||||||||||| !|||||| !.!.||||||..!:!!!.!|||.!! ThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAla 23624 : ACGTATAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCT : 23683 337 : SerProTrpIleAspLeuProMetAspLysPheGlyLysMetLeuArgLysAspLeuGln : 356 .!!|||||||||:!!||||||||||||||||||||||||:!!|||||||||!!:|||||| GlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysGluLeuGln 23684 : GGACCATGGATAAATTTACCAATGGACAAATTTGGAAAACTGCTAAGAAAAGAATTGCAA : 23743 357 : IleValValMetArgSerArgArgAlaCysCysLeuThrAlaCysGlyPhePheProIle : 376 !!::!!:!!:!!|||:!!|||||| !!! !..!||||||||||||||||||||| !!||| MetLeuIleLeuArgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIle 23744 : ATGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATA : 23803 377 : SerLeuGluThrTyrThrLys >>>> Target Intron 5 >>>> IleMetSerT : 387 ||||||||||||!:!|||||| 313 bp |||||||||| SerLeuGluThrPheThrLys++ ++IleMetSerT 23804 : TCTCTCGAAACCTTTACTAAGgt.........................agATCATGAGTA : 24149 388 : hrThrMetSerTyrPheThrLeuLeuLysGlnArgThrValAspAlaValAspThr : 405 ||:!!||||||||||||||||||||||||||| !!! !! !|||.!!|||:!!:!! hrSerMetSerTyrPheThrLeuLeuLysGlnCysIleGluAspThrValAsnSer 24150 : CATCAATGTCGTATTTCACATTATTAAAACAATGTATCGAGGACACGGTAAATTCG : 24205 vulgar: AfOr96 0 405 . KQ414828.1 21030 24205 + 1230 M 65 195 5 0 2 I 0 662 3 0 2 M 84 252 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 34 102 5 0 2 I 0 303 3 0 2 M 38 114 G 0 12 M 69 207 5 0 2 I 0 488 3 0 2 M 92 276 5 0 2 I 0 309 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21031 24205 1230 + . gene_id 1 ; sequence AfOr96 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 21031 21225 . + . KQ414828.1 exonerate:protein2genome:local exon 21031 21225 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 21226 21227 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 21226 21891 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 21890 21891 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 21892 22144 . + . KQ414828.1 exonerate:protein2genome:local exon 21892 22144 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22145 22146 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22145 22314 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 22313 22314 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 22315 22418 . + . KQ414828.1 exonerate:protein2genome:local exon 22315 22418 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22419 22420 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22419 22725 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 23058 . + . insertions 12 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23059 23060 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23059 23550 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 23549 23550 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 23551 23826 . + . KQ414828.1 exonerate:protein2genome:local exon 23551 23826 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23827 23828 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23827 24139 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 24138 24139 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 24140 24205 . + . KQ414828.1 exonerate:protein2genome:local exon 24140 24205 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21031 24205 1230 + . alignment_id 1 ; Query AfOr96 ; Align 21031 1 195 ; Align 21892 66 252 ; Align 22317 151 102 ; Align 22726 185 114 ; Align 22852 223 207 ; Align 23551 292 276 ; Align 24140 384 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 733 Query range: 147 -> 403 Target range: 37450 -> 39223 148 : LeuLeuThrAsnIleGlyArgAsnGluThrAspArgIleLeuIlePheAsnMetTyrLeu : 167 ::: ...|||:!!|||!:!||||||:!!|||||| !! !|||!:!:!!|||!::||| IleSerAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 37451 : atttcagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 37508 168 : AspLeuProLeuSerIleSerProTyrTyrGluIleAlaTyrThrIleGln >>>> Ta : 185 ||||||||||||||||||!!!|||||||||||||||...|||! !|||||| AspLeuProLeuSerIleThrProTyrTyrGluIleThrTyrIleIleGln++ 37509 : GATCTACCATTATCCATAACAccatattatgaaattacttACATAATACAGgt....... : 37564 186 : rget Intron 1 >>>> IleAlaAlaLeuAsnGlnAlaGlySerCysTyrPheCysP : 198 307 bp ! !:!!:!! !!|||!.!.!!:!!||||||.!!|||| ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysP 37565 : ..................agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCt : 37908 199 : heAspAsnIlePheCysIleLeuCysLeuAsnValAlaCysGlnPheArgIleLeuGlnT : 218 ||||| |||||| ||||||||||||:!!|||||| !!||||||||||||||||||| heAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnT 37909 : ttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAAT : 37968 219 : yrArgIleAlaAsn<-><-><-><->AlaProIleLeuLysLysLysGluAsnLeuAspS : 234 |||||||||||||| ::! !|||:!!|||!..!..||||||! !..!! yrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSerT 37969 : ACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCA : 38028 235 : erSerLysTyrProSerAspGluCysTyrAsnAlaPheLysAsnTyrIleGlnGlnHisG : 254 !!..!:!!! !|||!!::!!||||||! ! !|||||||||! !||||||||||||| hrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisG 38029 : CAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATC : 38088 255 : lnAlaLeuLeuHisPheCysGluThrLeuGluGlnIlePheThrIleIleValValGlyG : 274 ||||||||:!!.!.||||||! !|||||||||:!!:!!||||||:!!|||!.!:!!|||| lnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyG 38089 : AGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGAC : 38148 275 : lnIleLeuMetPheSerIleLeuPheCysPheLeuGlyTyrGlnValIleLeuAlaAspL : 294 ||:!!||||||||||||||||||.!!||||||:!!! !||||||!.!:!!|||!.!..!: lnValLeuMetPheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeuValSerI 38149 : AAGTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGGTGAGTA : 38208 295 : eu >>>> Target Intron 2 >>>> ThrThrSerTyrArgValSerPheIleSe : 304 !! 280 bp ... ||| !!:!! !!:! le++ ++AsnPheTyrTyrLeuTrpAsn***MetPh 38209 : TCgt.........................agaatttttattacctgTGGAATTAAATGTT : 38518 305 : rTyrLeuPheAlaGlyMetCysGlnLeuTrpMetPheThrTyrSerCysAspCysIleTh : 324 ! !.!..!!|||:!! !!|||||||||||||||||||||||||||||||||||||| eAlaThrMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleTh 38519 : CGCAACGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAAC : 38578 325 : rGlnGluSerAlaGluIleAlaSerAlaAlaTyrThrSerProTrpIleAspLeuProMe : 344 | !|||||| !.!.||||||..!:!!!.!|||.!!.!!|||||||||:!!|||||||| rThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMe 38579 : AACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAAT : 38638 345 : tAspLysPheGlyLysMetLeuArgLysAspLeuGlnIleValValMetArgSerArgAr : 364 ||||||||||||||||:::||||||||||||||||||:!::!!:!!:!!|||:!!||||| tAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgAr 38639 : ggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACG : 38698 365 : gAlaCysCysLeuThrAlaCysGlyPhePheProIleSerLeuGluThrTyrThrLys : 384 | !!! !! !||||||||||||||||||||| !!|||||||||||||||!:!|||||| gProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 38699 : ACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt : 38758 385 : >>>> Target Intron 3 >>>> IleMetSerThrThrMetSerTyrPheThrLeu : 394 406 bp ||||||||||||:!!|||||||||||||||||| ++IleMetSerThrSerMetSerTyrPheThrLeu 38759 : .........................agATCATGAGTACATCAATGTCGTATTTCACATTA : 39194 395 : LeuLysGlnArgThrValAspAlaVal : 403 |||||||||!!!! !! !|||.!!||| LeuLysGlnSerIleAspAspThrVal 39195 : TTAAAACAAAGTATCGACGACACGGTA : 39223 vulgar: AfOr96 147 403 . KQ414828.1 37450 39223 + 733 M 37 111 5 0 2 I 0 303 3 0 2 M 38 114 G 0 12 M 72 216 5 0 2 I 0 276 3 0 2 M 89 267 5 0 2 I 0 402 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37451 39223 733 + . gene_id 2 ; sequence AfOr96 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37451 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37451 37561 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 38210 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 38210 . + . insertions 12 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 38211 38212 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 38211 38490 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 38489 38490 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 38491 38757 . + . KQ414828.1 exonerate:protein2genome:local exon 38491 38757 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 38758 38759 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 38758 39163 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 39162 39163 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 39164 39223 . + . KQ414828.1 exonerate:protein2genome:local exon 39164 39223 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37451 39223 733 + . alignment_id 2 ; Query AfOr96 ; Align 37451 148 111 ; Align 37869 185 114 ; Align 37995 223 216 ; Align 38491 295 267 ; Align 39164 384 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 677 Query range: 183 -> 405 Target range: 32801 -> 34325 184 : GlnIleAlaAlaLeuAsnGlnAlaGlySerCysTyrPheCysPheAspAsnIlePheCys : 203 ||| ! !:!!:!! !!|||!.!||| !||||||.!!|||||||||||||||||| GlnAlaLeuSerValTyrGlnValGlyValCysTyrLeuCysPheAspAsnIlePhePhe 32802 : CAGGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCTttgataacatttttttc : 32859 204 : IleLeuCysLeuAsnValAlaCysGlnPheArgIleLeuGlnTyrArgIleAlaAsn<-> : 223 |||:::||||||:!!|||||| !!||||||||||||||||||||||||||||||||| IleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnVal 32860 : attatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTG : 32919 224 : <-><-><->AlaProIleLeuLysLysLysGluAsnLeuAspSerSerLysTyrProSer : 239 ::! !|||:!!|||!..!!.!!:||| !..!!!!:!!:!!! !||| SerGlyLeuSerGluIleValLysSerAsnAspAsnThrSerThrAlaGluLeuTyrSer 32920 : TCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACAAGCACGGCTGAATTATACTCA : 32979 240 : AspGluCysTyrAsnAlaPheLysAsnTyrIleGlnGlnHisGlnAlaLeuLeuHisPhe : 259 !!::!!||||||! ! !|||||||||! !|||||||||||||||||||||:::...||| GluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPhe 32980 : GAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTaattgaattt : 33039 260 : CysGluThrLeuGluGlnIlePheThrIleIleValValGlyGlnIleLeuMetPheSer : 279 |||||| ||||||:!!:!!||||||:!!||||||:!!||||||:!!|||||||||||| CysGluIleLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMetPheSer 33040 : tgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTAATGTTTAGC : 33099 280 : IleLeuPheCysPheLeuGlyTyrGlnValIleLeu >>>> Target Intron 1 > : 292 |||:!!.!!|||||| !||||||:!!|||:!!||| 406 bp IleIleIleCysPheAlaGlyTyrGluValLeuLeu++ 33100 : ATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGgt...................... : 33140 293 : >>> AlaAspLeuThrThrSerTyrArgValSerPheIleSerTyrLeuPheAlaGlyM : 310 ! ||| !! !..!! ||||||:!!|||! !!!!:!|||.!!.!!|||: ++IleThrLeuProPheGluSerArgValAlaPheThrCysPheLeuIleThrGlyV 33141 : ...agATAACGTTACCATTTGAATCGCGCGTTGCTTTCACGTGCTTCTTGATTACGGGCG : 33598 311 : etCysGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrGlnGluSerAlaGluI : 330 !! !!|||||||||||||||||||||||||||:!!||||||||| !|||||| !.!.| alSerGlnLeuTrpMetPheThrTyrSerCysAsnCysIleThrThrGluSerLeuAsnI 33599 : TGAGTCAACTATGGATGTTCACGTACAGTTGCAATTGCATAACAACAGAAAGCCTGAACA : 33658 331 : leAlaSerAlaAlaTyrThrSerProTrpIleAspLeuProMetAspLysPheGlyLysM : 350 |||||..!:!!!.!|||.!!.!!|||||||||:!!||||||||||||||||||||||||: leAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysL 33659 : TCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaac : 33718 351 : etLeuArgLysAspLeuGlnIleValValMetArgSerArgArgAlaCysCysLeuThrA : 370 ::||||||||||||||||||:!::!!:!!:!!|||:!!|||||| !!! !..!||||||| euLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerAlaLeuThrA 33719 : tgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACTG : 33778 371 : laCysGlyPhePheProIleSerLeuGluThrTyrThrLys >>>> Target Intro : 384 |||||||||||||| !!|||!!!|||||||||!:!|||||| 440 bp laCysGlyPhePheSerIleThrLeuGluThrPheThrLys++ 33779 : CCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTACTAAGgt................. : 33822 385 : n 2 >>>> IleMetSerThrThrMetSerTyrPheThrLeuLeuLysGlnArgThrVa : 400 ||||||||||||:!!|||||||||||||||||||||||||||!!!.!!! ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnSerAlaGl 33823 : ........agATCATGAGTACATCAATGTCGTATTTCACCCTACTAAAACAAAGTGCCGA : 34308 401 : lAspAlaValAspThr : 405 !|||.!!|||:!!:!! uAspThrValAsnSer 34309 : GGACACAGTAAATTCG : 34325 vulgar: AfOr96 183 405 . KQ414828.1 32801 34325 + 677 M 39 117 G 0 12 M 69 207 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32802 34325 677 + . gene_id 3 ; sequence AfOr96 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32802 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32802 33137 . + . insertions 12 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 2 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34325 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34325 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32802 34325 677 + . alignment_id 3 ; Query AfOr96 ; Align 32802 184 117 ; Align 32931 223 207 ; Align 33544 292 276 ; Align 34260 384 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 670 Query range: 149 -> 402 Target range: 2879 -> 6474 150 : ThrAsnIleGlyArgAsnGluThrAspArgIleLeuIlePheAsnMetTyrLeuAspLeuPr : 170 .!!!::||||||:::||||||:::||||||:!!|||||| !!|||.!.!:::!!|||||||| AlaSerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuPr 2880 : GCAAgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCC : 2940 171 : oLeuSerIleSerProTyrTyrGluIleAlaTyrThrIleGln >>>> Target Intro : 185 |:!!!!!|||!!!||||||||||||||| :::||||||||| 406 bp oIleThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2941 : GATAACCATCACACCATactatgaaatattatttacgaTACAGgt................. : 2987 186 : n 1 >>>> IleAlaAlaLeuAsnGlnAlaGlySerCysTyrPheCysPheAspAsnIleP : 202 ||| ! !:!!! ! !.! !!! ! !!|||.!!|||.!!||||||.!!. ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheL 2988 : ........agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTC : 3442 203 : heCysIleLeuCysLeuAsnValAlaCysGlnPheArgIleLeuGlnTyrArgIleAlaAsn : 222 !.|||!!::!! !|||:!!..!||| !||||||||||||||||||||||||:!::!!||| euCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsn 3443 : TGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAAT : 3502 223 : AlaProIleLeuLysLysLysGluAsnLeuAspSerSerLysTyrPro<-><->SerAspGl : 241 !.! ! ! !!!.:!!:::...::: |||...||| ||| |||||||| ValCysGlyAlaAsnGluArgSerAspLysIleSerLysLysThrProSerAsnSerAspGl 3503 : GTGTGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTCGGACGA : 3565 242 : uCysTyrAsnAlaPheLysAsnTyrIleGlnGlnHisGlnAlaLeuLeuHisPheCysGluT : 262 ||||||| ! !|||||||||! !|||||||||||||||||||||:!!.!.!:!|||.!.! uCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnL 3566 : ATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACA : 3628 263 : hrLeuGluGlnIlePheThrIleIleValValGlyGlnIleLeuMetPheSerIleLeuPhe : 282 !|||:!!:!!:!:||| !|||.!!|||:!!!.!|||:!:|||:!:||||||:!:|||.!. ysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeuLeuMet 3629 : AACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATG : 3688 283 : CysPheLeuGlyTyrGlnValIleLeu >>>> Target Intron 2 >>>> AlaAsp : 293 |||.!! !|||||| :!!:!::!! 457 bp ! !||| CysLeuAspGlyTyr---LeuValMet++ ++GluAsp 3689 : TGCCTCGATGGATAT---TTGGTGATGgt.........................agGAAGAT : 4175 294 : LeuThrThrSerTyrArgValSerPheIleSerTyrLeuPheAlaGlyMetCysGlnLeuTr : 314 ! !!! !! ! ! |||:!!!!!|||:!:! !:!!||| !.! !!:!!|||||||||! ThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLe 4176 : ACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTT : 4238 315 : pMetPheThrTyrSerCysAspCysIleThrGlnGluSerAlaGluIleAlaSerAlaAlaT : 335 !||||||||||||||||||||||||:!:! !!:!|||||| !.!.:!:|||!:!||| !| uMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIleT 4239 : GATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATAT : 4301 336 : yrThrSerProTrpIleAspLeuProMetAspLysPheGlyLysMetLeuArgLysAspLeu : 355 || !!!! !!|||||| !!||||||||||||!:!! !|||::!|||||||||||||||||| yrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAspLeu 4302 : ACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTG : 4361 356 : GlnIleValValMetArgSerArgArgAlaCysCysLeuThrAlaCysGlyPhePheProIl : 376 !.!!|||:!! ||||||||| ! !!||||||||||||||||||||||||||||||:! ThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePheProVa 4362 : ACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGT : 4424 377 : eSerLeuGluThrTyrThrLys >>>> Target Intron 3 >>>> IleMetSerTh : 387 :||||||||||||||||||..! 1970 bp :!!!!:||||| lSerLeuGluThrTyrThrSer++ ++ValIleSerTh 4425 : GTCACTGGAAACGTACACTTCGgt.........................agGTTATAAGTAC : 6427 388 : rThrMetSerTyrPheThrLeuLeuLysGlnArgThrValAspAla : 402 |.!!:!!||||||||||||||||||!:!||||||! !! !|||::! rAlaValSerTyrPheThrLeuLeuArgGlnArgIleGluAspSer 6428 : AGCAGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAGGACAGC : 6474 vulgar: AfOr96 149 402 . KQ414828.1 2879 6474 + 670 M 35 105 5 0 2 I 0 402 3 0 2 M 54 162 G 0 6 M 49 147 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2880 6474 670 + . gene_id 4 ; sequence AfOr96 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2880 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2880 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 6 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6474 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6474 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2880 6474 670 + . alignment_id 4 ; Query AfOr96 ; Align 2880 150 105 ; Align 3391 185 162 ; Align 3559 239 147 ; Align 3706 289 9 ; Align 4172 292 276 ; Align 6418 384 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 569 Query range: 0 -> 185 Target range: 31105 -> 32500 1 : MetAsnLeuLysTyrArgLysAspLeuAlaPheThrValAlaSerPheTyrLeuArgVal : 20 |||!:!||||||||||||:!!|||:!!:!!|||! !:!!|||!:!|||!:!||| !||| MetSerLeuLysTyrArgGlnAspValSerPheArgLeuAlaAsnPhePheLeuTyrVal 31106 : ATGAGCTTGAAATATCGTCAAGACGTTTCCTTTAGATTAGCCAACTTTTTTCTGTATGTT : 31163 21 : ValGlyPheTrpLeuThrThrSerArgLeuGluGluCysPheArgIleGlyValValGly : 40 ||||||||||||!!!.!!.!!!:!|||:!!||||||!! ||||||! !!.!!.!:!! ! ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeu 31164 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCTGCGATTCTG : 31223 41 : TyrThrIleLeuAlaIleThrPheSerAlaTrpValGlnIleArgGlyLeuTyrPheAsn : 60 |||||||||:!!.!!:!! !||| ! !|||:!!|||:!:|||||||||||||||::! TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSer 31224 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGGCTTTATTTCTCC : 31283 61 : TrpGlyAspPheSer >>>> Target Intron 1 >>>> AlaCysThrTyrIleA : 71 ||||||:!!|||..! 670 bp !.!|||! !|||!!:| TrpGlyAsnPheGlu++ ++ValCysMetTyrMetA 31284 : TGGGGAAACTTTGAAgt.........................agGTTTGCATGTACATGG : 31986 72 : laCysAspGlyLeuGlyLeuValMetAspPhePheLysIlePheSerLeuPheIleHisG : 91 |||||:!!.!!:!!!.!||||||:!!|||.!..!!||||||||| !||| !!:!!!..: laCysAsnSerIleAlaLeuValLeuAspIleIleLysIlePheValLeuValValArgL 31987 : CATGCAACAGTATAGCCCTGGTTTTGGATATAATCAAGATTTTCGTCCTAGTCGTACGGA : 32046 92 : lnLysLysPheLeuGlyLeuMetAlaTyrMetGlnLysAsnPheTrpHisTyrAspTyrA : 111 !!||||||||||||||||||!!:! !||||||||||||||||||:::||| ::!|||| ysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPhePheHisLeuAsnTyrA 32047 : AGAAAAAGTTTCTCGGTCTGATTGAGTACATgcagaagaatttctttcatttgaaCTACG : 32106 112 : spGluGluGluAsnLeuIleValLysAspThrLysLysThrThrAlaTyrPheValCysI : 131 ||:!!!!:||||||! !|||:!! ! !!.!!|||::!||| ! !||||||||||||: spGlnAspGluAsnSerIleIleAlaHisAlaLysArgThrCysIleTyrPheValCysV 32107 : ATCAGGACGAGAATTCTATTATCGCACACGCGAAACGAACGTGCATCTACTTCGTCTGCG : 32166 132 : leLeuThrPheSerSerLeuSerSerIlePheMetTyrMetPheArgProLeuLeu{T} : 150 !!!!!:!!|||!!!|||! !|||!!!:!!||| |||!!:.!.||||||!!!:!!{:} alPheSerPheCysSerGlnSerThrValPheSerTyrIleIleArgProPheVal{S}+ 32167 : TCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTATATAATAAGGCCATTTGTA{T}g : 32224 151 : >>>> Target Intron 2 >>>> {hr}AsnIleGlyArgAsnGluThrAspArgI : 160 170 bp {!!}|||:!!|||!:!||||||:!!|||||| + ++{er}AsnLeuGlyLysAsnGluSerAspArgG 32225 : t.........................ag{ca}AATCTTGGAAAGAATGAATCTGATAGAG : 32423 161 : leLeuIlePheAsnMetTyrLeuAspLeuProLeuSerIleSerProTyrTyrGluIleA : 180 !! !|||!:!:!!|||!::||||||||||||||||||:!!!!!|||||||||||||||. luHisIleTyrAspMetTrpLeuAspLeuProLeuSerValThrProTyrTyrGluIleT 32424 : AACATATATACGATATGTGGCTCGATCTACCATTATCCGTAACAccatattatgaaatta : 32483 181 : laTyrThrIleGlnIle : 185 ..|||! !||||||:!! hrTyrIleIleGlnVal 32484 : cttACATAATACAGGTA : 32500 vulgar: AfOr96 0 185 . KQ414828.1 31105 32500 + 569 M 65 195 5 0 2 I 0 666 3 0 2 M 84 252 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31106 32500 569 + . gene_id 5 ; sequence AfOr96 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 31106 31300 . + . KQ414828.1 exonerate:protein2genome:local exon 31106 31300 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 31301 31302 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 31301 31970 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 31969 31970 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 31971 32223 . + . KQ414828.1 exonerate:protein2genome:local exon 31971 32223 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32224 32225 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32224 32393 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 32392 32393 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 32394 32500 . + . KQ414828.1 exonerate:protein2genome:local exon 32394 32500 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31106 32500 569 + . alignment_id 5 ; Query AfOr96 ; Align 31106 1 195 ; Align 31971 66 252 ; Align 32396 151 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 476 Query range: 184 -> 403 Target range: 10831 -> 13164 185 : IleAlaAlaLeuAsnGlnAlaGlySerCysTyrPheCysPheAspAsnIlePheCysIle : 204 |||:!!!.!||| !! .!!|||! !||||||||||||||||||||||||||||||||| IleSerGlyLeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIle 10832 : ATTTCAGGACTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATC : 10889 205 : LeuCysLeuAsnValAlaCysGlnPheArgIleLeuGlnTyrArgIleAlaAsnAlaPro : 224 :!! !!:!!:!!:!!::! !!||||||||||||||||||||||||:!:.!!!!. ! !! MetSerValHisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSer 10890 : ATGAGCGTGCATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCC : 10949 225 : IleLeuLysLysLysGluAsnLeuAspSerSerLysTyrProSerAspGluCys<-><-> : 243 !:!!:!! ! :!! !!:: ::: ::: ! !! !!!:!!:||| AspValGlnTyrGlnIleSerGluLysAsnMetGluSerValLeuGluAspCysThrArg 10950 : GACGTACAATATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGT : 11009 244 : <-><->TyrAsnAlaPheLysAsnTyrIleGlnGlnHisGlnAlaLeuLeuHisPheCys : 260 |||.!. !||||||!:!|||:!!!:!|||||||||.!!|||:!! !!!:!! ! ArgSerTyrGluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyr 11010 : AGATCTTACGAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTAC : 11069 261 : GluThrLeuGluGlnIlePheThrIleIleValValGlyGlnIleLeuMetPheSerIle : 280 |||! !||||||!!.:!!!:!|||! !|||:!!:!!||||||:!:|||:!!||||||:!: GluLysLeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerVal 11070 : GAGAAGCTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTG : 11129 281 : LeuPheCysPheLeuGlyTyrGlnValIleLeu >>>> Target Intron 1 >>>> : 292 |||.!!|||.!!!!!|||||||||:!!:!!||| 1305 bp LeuIleCysLeuPheGlyTyrGlnIleLeuLeu++ 11130 : TTAATTTGCCTCTTTGGTTATCAGATATTATTGgt......................... : 11167 293 : AlaAspLeuThrThrSerTyrArgValSerPheIleSerTyrLeuPheAlaGlyMetC : 311 |||:!! !:!! !:!! ||| !! !|||!!:! ! !:!!! !!.!!.!||| ++AlaAsnThrSerLeuAlaArgArgSerIlePheMetPheLeuIleCysGlyAlaMetV 11168 : agGCTAATACTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGG : 12527 312 : ysGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrGlnGluSerAlaGluIleA : 331 ! !|||!::||||||||||||||||||:!! :!:! !:!!:!!|||! !.!.|||| alLeuLeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleA 12528 : TTTTATTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTG : 12587 332 : laSerAlaAlaTyrThrSerProTrpIleAspLeuProMetAspLysPheGlyLysMetL : 351 ||! !|||||||||:!!:!!! !|||! ! !:!!||||||:!!||| !||||||! !| laPheAlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysL 12588 : CTTTTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGC : 12647 352 : euArgLysAspLeuGlnIleValValMetArgSerArgArgAlaCysCysLeuThrAlaC : 371 ||||| ! |||||| !!!:|||:!! !||||||||||||!.!||||||||||||||| euArgHisAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaA 12648 : TACGGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGA : 12707 372 : ysGlyPhePheProIleSerLeuGluThrTyrThr--{L} >>>> Target Intron : 383 !||||||||||||:!:||||||||||||||||||##{:} 357 bp snGlyPhePheProValSerLeuGluThrTyrThr##{G}++ 12708 : ATGGATTTTTCCCTGTGTCCTTAGAAACTTATACTAC{G}gt.................. : 12748 384 : 2 >>>> {ys}IleMetSerThrThrMetSerTyrPheThrLeuLeuLysGlnArgTh : 399 {!!}|||:::||||||.!! !||||||||||||||||||!:!.!.!.!.. +-{lu}IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnVa 12749 : .......ac{ag}attttgAGTACCGCGGCGTCGTACTTCACATTATTGAGAAATAACGT : 13150 400 : rValAspAlaVal : 403 !! !|||!.!||| lGluAspValVal 13151 : AGAAGATGTAGTT : 13164 vulgar: AfOr96 184 403 . KQ414828.1 10831 13164 + 476 M 58 174 G 0 12 M 49 147 5 0 2 I 0 1301 3 0 2 M 91 273 F 0 2 S 0 1 5 0 2 I 0 353 3 0 2 S 1 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10832 13164 476 + . gene_id 6 ; sequence AfOr96 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 10832 11164 . + . KQ414828.1 exonerate:protein2genome:local exon 10832 11164 . + . insertions 12 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 11165 11166 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 11165 12469 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12468 12469 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 12470 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12745 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13102 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13101 13102 . + . intron_id 1 ; splice_site "ac" KQ414828.1 exonerate:protein2genome:local cds 13103 13164 . + . KQ414828.1 exonerate:protein2genome:local exon 13103 13164 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10832 13164 476 + . alignment_id 6 ; Query AfOr96 ; Align 10832 185 174 ; Align 11018 243 147 ; Align 12470 292 273 ; Align 13105 384 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 414 Query range: 233 -> 402 Target range: 18207 -> 19912 234 : SerSerLysTyrProSerAspGluCysTyrAsnAlaPheLysAsnTyrIleGlnGlnHis : 253 |||||| !! ! !:!! ||||||||||||!.!.!!|||:!!||||||::!|||||| SerSerAlaCysPheAlaThrGluCysTyrAsnValLeuLysAspTyrIleArgGlnHis 18208 : AGTTCGGCGTGCTTTGCAACAGAATGTTACAACGTTCTCAAAGATTATATCAGACAGCAT : 18265 254 : GlnAlaLeuLeuHisPheCysGluThrLeuGluGlnIlePheThrIleIleValValGly : 273 ||| !|||:!! !!:!|||.!.! !||||||:!!:!:|||!.!|||||||||:!!||| GlnAsnLeuIleAlaTyrCysAsnLysLeuGluLysValPheAsnIleIleValLeuGly 18266 : CAGAACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGTTCAATATCATTGTTCTGGGG : 18325 274 : GlnIleLeuMetPheSerIleLeuPheCysPheLeuGlyTyrGlnValIleLeuAlaAsp : 293 |||:!:||||||||||||!!:|||.!!|||.!! !|||!:!|||:!!:!!:!!!.!! ! GlnLeuLeuMetPheSerMetLeuIleCysLeuAspGlyPheGlnIleLeuMetValGly 18326 : CAATTGTTAATGTTCAGCATGTTGATCTGTCTCGATGGATTTCAGATACTTATGGTTGGT : 18385 294 : Leu{T} >>>> Target Intron 1 >>>> {hr}ThrSerTyrArgValSerPhe : 302 :!!{!} 969 bp {.!}||| !! !|||..! !!.!. Met{A}+- +-{sn}ThrProThrArgThrArgLeu 18386 : ATG{A}ga.........................aa{AT}ACACCTACCAGAACCCGACTG : 19381 303 : IleSerTyrLeuPheAlaGlyMetCys<-><->GlnLeuTrpMetPheThrTyrSerCys : 320 |||! ! !!!! ! !||| ||| |||||| !|||||||||||||||||| IlePheIlePheHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSerCys 19382 : ATTTTCATCTTTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGCTGC : 19441 321 : AspCysIleThrGlnGluSerAlaGluIleAlaSerAlaAlaTyrThrSerProTrpIle : 340 |||||||||! !::!||||||.!!...! !|||..!|||!.!|||!:!.!!||||||! ! AspCysIleIleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyProTrpThr 19442 : GACTGCATCATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGACA : 19501 341 : AspLeuProMetAspLysPheGlyLysMetLeuArgLysAspLeuGlnIleValValMet : 360 !|||||||||..! ! !|||||||||:!!||||||||||||..!:!!|||:!!||| LeuLeuProMetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuValIleMet 19502 : CTTTTACCAATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCATG : 19561 361 : ArgSerArgArgAlaCysCysLeuThrAlaCysGlyPhePheProIleSerLeuGluThr : 380 ||||||!!! ! !!||||||||||||||| ! ||||||||| !:!:|||||||||||| ArgSerSerValProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGluThr 19562 : AGATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAACG : 19621 381 : TyrThrLys >>>> Target Intron 2 >>>> IleMetSerThrThrMetSerT : 391 |||||| ! 223 bp :!!:!:||||||.!! |||| TyrThrGly++ ++ValLeuSerThrAlaAlaSerT 19622 : TACACAGGGgt.........................agGTTTTAAGCACCGCAGCCTCAT : 19877 392 : yrPheThrLeuLeuLysGlnArgThrValAspAla : 402 |||||||||||||||||||||||:!!! !:!!||| yrPheThrLeuLeuLysGlnArgSerGluAsnAla 19878 : ACTTTACGTTGCTGAAGCAAAGATCAGAGAATGCC : 19912 vulgar: AfOr96 233 402 . KQ414828.1 18207 19912 + 414 M 61 183 S 0 1 5 0 2 I 0 965 3 0 2 S 1 2 M 16 48 G 0 6 M 72 216 5 0 2 I 0 219 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 18208 19912 414 + . gene_id 7 ; sequence AfOr96 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 18208 18391 . + . KQ414828.1 exonerate:protein2genome:local exon 18208 18391 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18392 18393 . + . intron_id 1 ; splice_site "GA" KQ414828.1 exonerate:protein2genome:local intron 18392 19360 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 19359 19360 . + . intron_id 0 ; splice_site "AA" KQ414828.1 exonerate:protein2genome:local cds 19361 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19361 19632 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19912 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19912 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 18208 19912 414 + . alignment_id 7 ; Query AfOr96 ; Align 18208 234 183 ; Align 19363 296 48 ; Align 19417 312 216 ; Align 19856 384 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 367 Query range: 0 -> 149 Target range: 26060 -> 27176 1 : MetAsnLeuLysTyrArgLysAspLeuAlaPheThrValAlaSerPheTyrLeuArgVal : 20 |||!:!||||||||||||:!!|||:!!:!! !!! !:!!|||!:!|||!:!||| !||| MetSerLeuLysTyrArgGlnAspValSerValArgLeuAlaAsnPhePheLeuTyrVal 26061 : ATGAGCTTGAAATATCGTCAAGACGTTTCCGTTAGATTAGCCAACTTTTTTCTGTATGTC : 26118 21 : ValGlyPheTrpLeuThrThrSerArgLeuGluGluCysPheArgIleGlyValValGly : 40 ||||||||||||!!!.!!.!!!:!|||:!!||||||!! ||||||! !!.!!.!:!! ! ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeu 26119 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCGGCGATTCTG : 26178 41 : TyrThrIleLeuAlaIleThrPheSerAlaTrpValGlnIle >>>> Target Intr : 55 |||||||||:!!.!!:!! !||| ! !|||:!!|||:!: 669 bp TyrThrIleValThrValPhePheValMetTrpLeuGlnLeu+- 26179 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGgg................ : 26225 56 : on 1 >>>> ArgGlyLeuTyrPheAsnTrpGlyAspPheSerAlaCysThrTyrIleA : 71 ... |||||| ::: .....!!.!|||! !|||!!:| +-AsnLysLeuTyrVal***PheLeuPheLeuGlnValCysMetTyrMetA 26226 : .........aaaacaaattatacgtctaatttctatttctacaGGTTTGCATGTACATGG : 26940 72 : laCysAspGlyLeuGlyLeuValMetAspPhePheLysIlePheSerLeuPheIleHisG : 91 || !!:!!||||||!.!:!!|||:!!|||.!..!!|||||||||!!!||| !!:!!|||: laGlyAsnGlyLeuAlaMetValLeuAspIleIleLysIlePheThrLeuValValHisL 26941 : CTGGCAACGGTTTAGCCATGGTTTTGGATATAATCAAGATTTTCACCCTAGTCGTACACA : 27000 92 : lnLysLysPheLeuGlyLeuMetAlaTyrMetGlnLysAsnPheTrpHisTyrAspTyrA : 111 !!||||||||||||||||||!!:! !||||||||||||||||||||||||! :!!|||| ysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheTrpHisLeuAsnTyrA 27001 : AGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTTTGGCATTTGAACTACG : 27060 112 : spGluGluGluAsnLeuIleValLysAspThrLysLysThrThrAlaTyrPheValCysI : 131 ||:!! ! ||||||! !:!!:!! !.!..!!|||::!! ! ! !||||||||||||: spGlnTyrGluAsnSerValLeuAlaGlnAlaLysArgMetCysIleTyrPheValCysV 27061 : ATCAGTACGAGAATTCTGTTTTGGCACAGGCGAAACGAATGTGCATTTACTTCGTGTGcg : 27120 132 : leLeuThrPheSerSerLeuSerSerIlePheMetTyrMetPheArgProLeuLeu : 149 ::|||:::||| ||| ||||||:!!.!! |||!!:.!.|||||||||:!! alLeuSerPhePheSerGlnSerSerValLeuSerTyrIleIleArgProLeuVal 27121 : ttttgtcatttttttctcaatctTCAGTTCTTTCCTATATCATAAGGCCACTTGTA : 27176 vulgar: AfOr96 0 149 . KQ414828.1 26060 27176 + 367 M 54 162 5 0 2 I 0 665 3 0 2 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26061 27176 367 + . gene_id 8 ; sequence AfOr96 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 26061 26222 . + . KQ414828.1 exonerate:protein2genome:local exon 26061 26222 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 26223 26224 . + . intron_id 1 ; splice_site "GG" KQ414828.1 exonerate:protein2genome:local intron 26223 26891 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 26890 26891 . + . intron_id 0 ; splice_site "aa" KQ414828.1 exonerate:protein2genome:local cds 26892 27176 . + . KQ414828.1 exonerate:protein2genome:local exon 26892 27176 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 26061 27176 367 + . alignment_id 8 ; Query AfOr96 ; Align 26061 1 162 ; Align 26892 55 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 350 Query range: 0 -> 149 Target range: 36171 -> 37287 1 : MetAsnLeuLysTyrArgLysAspLeuAlaPheThrValAlaSerPheTyrLeuArgVal : 20 |||!:!||||||||||||:!!|||:!!:!!.!!! !:!!|||!:!|||!:!||| !||| MetSerLeuLysTyrArgGlnAspValSerIleLysLeuAlaAsnPhePheLeuTyrVal 36172 : ATGAGCTTGAAATATCGTCAAGACGTTTCCATTAAATTAGCCAACTTTTTTCTGTATGTC : 36229 21 : ValGlyPheTrpLeuThrThrSerArgLeuGluGluCysPheArgIleGlyValValGly : 40 ||||||||||||!!!.!!.!!!:!|||:!!||||||!! ||||||! !!.!!.!:!! ! ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeu 36230 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCGGCGATTCTG : 36289 41 : TyrThrIleLeuAlaIleThrPheSerAlaTrpValGlnIle >>>> Target Intr : 55 |||||||||:!!.!!:!! !||| ! !|||:!!|||:!: 669 bp TyrThrIleValThrValPhePheValMetTrpLeuGlnLeu-- 36290 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGag................ : 36336 56 : on 1 >>>> ArgGlyLeuTyrPheAsnTrpGlyAspPheSerAlaCysThrTyrIleA : 71 ... |||||| ::: .....!!.!|||! !|||!!:| +-AsnLysLeuTyrVal***PheLeuPheLeuGlnValCysMetTyrMetA 36337 : .........aaaacaaattatacgtctaatttctatttctacaGGTTTGCATGTACATGG : 37051 72 : laCysAspGlyLeuGlyLeuValMetAspPhePheLysIlePheSerLeuPheIleHisG : 91 || !!:!!||||||!.!:!!|||:!!|||.!..!!||||||||||||||| !!:!!|||: laGlyAsnGlyLeuAlaMetValLeuAspIleIleLysIlePheSerLeuValValHisL 37052 : CAGGCAACGGTTTAGCCATGGTTTTGGATATAATCAAGATTTTCTCCCTAGTCGTACACA : 37111 92 : lnLysLysPheLeuGlyLeuMetAlaTyrMetGlnLysAsnPheTrpHisTyrAspTyrA : 111 !!||||||||||||||||||!!:! !||||||||||||||||||! !|||! :!!|||| ysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheLeuHisLeuAsnTyrA 37112 : AGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTCTTGCATTTGAACTACG : 37171 112 : spGluGluGluAsnLeuIleValLysAspThrLysLysThrThrAlaTyrPheValCysI : 131 ||:!! ! ||||||! !:!!:!! !.!..!!|||::!! ! ! !||||||||||||: spGlnTyrGluAsnSerValIleAlaGlnAlaLysArgMetCysIleTyrPheValCysV 37172 : ATCAGTACGAGAATTCTGTTATCGCACAGGCGAAACGAATGTGCATTTACTTCGTGTGcg : 37231 132 : leLeuThrPheSerSerLeuSerSerIlePheMetTyrMetPheArgProLeuLeu : 149 ::|||:::||| ||| ||||||:!!.!! |||!!: ! |||||||||:!! alLeuSerPhePheSerGlnSerSerValLeuSerTyrIleValArgProLeuVal 37232 : ttttgtcatttttttctcaatctTCAGTTCTTTCCTATATAGTAAGGCCACTTGTA : 37287 vulgar: AfOr96 0 149 . KQ414828.1 36171 37287 + 350 M 54 162 5 0 2 I 0 665 3 0 2 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 36172 37287 350 + . gene_id 9 ; sequence AfOr96 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 36172 36333 . + . KQ414828.1 exonerate:protein2genome:local exon 36172 36333 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 36334 36335 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local intron 36334 37002 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37001 37002 . + . intron_id 0 ; splice_site "aa" KQ414828.1 exonerate:protein2genome:local cds 37003 37287 . + . KQ414828.1 exonerate:protein2genome:local exon 37003 37287 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 36172 37287 350 + . alignment_id 9 ; Query AfOr96 ; Align 36172 1 162 ; Align 37003 55 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 320 Query range: 293 -> 384 Target range: 28511 -> 28784 294 : LeuThrThrSerTyrArgValSerPheIleSerTyrLeuPheAlaGlyMetCysGlnLeu : 313 |||:!! !..!!::||||||:!!!!. !!!!:!! !.!..!!|||:!! !!|||||| LeuSerPheGluTrpArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeu 28512 : TTATCATTTGAATGGCGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTA : 28569 314 : TrpMetPheThrTyrSerCysAspCysIleThrGlnGluSerAlaGluIleAlaSerAla : 333 ||||||||||||||||||||||||||||||||| !|||||| !.!.||||||..!:!! TrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSer 28570 : TGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCT : 28629 334 : AlaTyrThrSerProTrpIleAspLeuProMetAspLysPheGlyLysMetLeuArgLys : 353 !.!|||.!!.!!|||||||||:!!||||||||||||||||||||||||:::||||||||| ValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLys 28630 : GTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAA : 28689 354 : AspLeuGlnIleValValMetArgSerArgArgAlaCysCysLeuThrAlaCysGlyPhe : 373 |||||||||:!::!!:!!:!!|||:!!|||||| !!! !! !|||||||||||||||||| AspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThrAlaCysGlyPhe 28690 : GATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGATTC : 28749 374 : PheProIleSerLeuGluThrTyrThrLysIle : 384 ||| !!|||||||||||||||!:!||||||:!! PheSerIleSerLeuGluThrPheThrLysVal 28750 : TTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 28784 vulgar: AfOr96 293 384 . KQ414828.1 28511 28784 + 320 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28512 28784 320 + . gene_id 10 ; sequence AfOr96 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28512 28784 . + . KQ414828.1 exonerate:protein2genome:local exon 28512 28784 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28512 28784 320 + . alignment_id 10 ; Query AfOr96 ; Align 28512 294 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 239 Query range: 147 -> 230 Target range: 17818 -> 18177 148 : LeuLeuThrAsnIleGlyArgAsnGluThrAspArgIleLeuIlePheAsnMetTyrLeu : 167 :!!|||...|||||||||:::||||||:!!!!:||||||||| !|||||||||!:::!! IleLeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpVal 17819 : ATTTTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTC : 17876 168 : AspLeuProLeuSerIleSerProTyrTyrGluIleAlaTyrThrIleGln >>>> Ta : 185 :!!||||||||||||!!:!!!|||||||||||||||...:::::::::||| AsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln++ 17877 : AACTTGCCATTATCAATGACGCCATATTACgaaataactttttcattaCAGgt....... : 17932 186 : rget Intron 1 >>>> IleAlaAlaLeuAsnGlnAlaGlySerCysTyrPheCysP : 198 110 bp ::! !:!!||| !!!!. !||| ! !!|||||||||| ++ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysP 17933 : ..................aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgct : 18079 199 : heAspAsnIlePheCysIleLeuCysLeuAsnValAlaCysGlnPheArgIleLeuGlnT : 218 ||||||||......||||||:!! !|||:!!!.!||| !|||||||||:!!||||||| heAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnT 18080 : tcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAAT : 18139 219 : yrArgIleAlaAsnAlaProIleLeuLysLysLysGlu : 230 |||||!!:|||||| ! !! !|||||| |||||| yrArgMetAlaAsnMetThrAspLeuLysAspLysGlu 18140 : ACCGAATGGCGAATATGACCGATTTAAAGGacaaagag : 18177 vulgar: AfOr96 147 230 . KQ414828.1 17818 18177 + 239 M 37 111 5 0 2 I 0 106 3 0 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17819 18177 239 + . gene_id 11 ; sequence AfOr96 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17819 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17819 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18177 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18177 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17819 18177 239 + . alignment_id 11 ; Query AfOr96 ; Align 17819 148 111 ; Align 18040 185 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 7 -> 72 Target range: 15121 -> 15316 8 : AspLeuAlaPheThrValAlaSerPheTyrLeuArgValValGlyPheTrpLeuThrThr : 27 |||:!!:!!.!!!:!:!!.!!||| !!!:!:!!!:!:!!||||||.!.|||:!!.!!:!! AspIleSerIleSerLeuThrSerValPheMetLysIleValGlyLeuTrpMetAlaSer 15122 : GACATATCAATCAGCCTGACGTCCGTTTTCATGAAGATCGTTGGACTGTGGATGGCGTCG : 15179 28 : SerArgLeuGluGluCysPheArgIleGlyValValGlyTyrThrIleLeuAlaIleThr : 47 !:!|||!!!|||:!! ! ! |||! ! !..!:!! !!||||||:!::!!|||||| ! AsnArgPheGluGlnArgValArgAsnIleThrLeuCysTyrThrLeuIleAlaIleLeu 15180 : AACCGTTTCGAGCAACGAGTACGAAATATCACGCTGTGTTACACGCTGATCGCGATTCTC : 15239 48 : PheSerAlaTrpValGlnIleArgGlyLeuTyrPheAsnTrpGlyAspPheSerAlaCys : 67 |||:!! !|||:!!|||!!:! !! !||||||!:!:::||||||||||||.!!!.! !! PheAlaLeuTrpIleGlnMetThrAspLeuTyrTyrSerTrpGlyAspPheGlyValSer 15240 : TTCGCCCTGTGGATACAAATGACGGATTTGTATTACTCGTGGGGAGATTTTGGTGTAAGT : 15299 68 : ThrTyrIleAlaCys : 72 .!! ! !||| AlaArgGlyIleCys 15300 : GCGAGGGGAATTTGT : 15316 vulgar: AfOr96 7 72 . KQ414828.1 15121 15316 + 145 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15122 15316 145 + . gene_id 12 ; sequence AfOr96 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 15122 15316 . + . KQ414828.1 exonerate:protein2genome:local exon 15122 15316 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15122 15316 145 + . alignment_id 12 ; Query AfOr96 ; Align 15122 8 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 147 -> 185 Target range: 27339 -> 27453 148 : LeuLeuThrAsnIleGlyArgAsnGluThrAspArgIleLeuIlePheAsnMetTyrLeu : 167 :::|||...|||:!!|||!:!||||||:!!|||||| !! !||||||:!!|||!::!!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPhe 27340 : attttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTC : 27397 168 : AspLeuProLeuSerIleSerProTyrTyrGluIleAlaTyrThrIleGlnIle : 185 |||||||||||||||:!!!!!|||||||||||||||...|||! !||||||:!! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnVal 27398 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTA : 27453 vulgar: AfOr96 147 185 . KQ414828.1 27339 27453 + 134 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27340 27453 134 + . gene_id 13 ; sequence AfOr96 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27340 27453 . + . KQ414828.1 exonerate:protein2genome:local exon 27340 27453 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27340 27453 134 + . alignment_id 13 ; Query AfOr96 ; Align 27340 148 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 5 -> 65 Target range: 721 -> 901 6 : ArgLysAspLeuAlaPheThrValAlaSerPheTyrLeuArgValValGlyPheTrpLeuThrT : 27 !.!!:!|||:!!||| ! ||||||.!!:!!|||||||||!:!:!!:!!||||||||||||.!! AsnArgAspIleAlaValThrValThrAlaPheTyrLeuLysIleIleGlyPheTrpLeuAlaA 722 : AACAGGGACATAGCGGTGACCGTTACGGCTTTCTACTTGAAAATTATCGGCTTCTGGTTAGCTG : 785 28 : hrSerArgLeuGluGluCysPheArgIleGlyValValGlyTyrThrIleLeuAlaIleThrPh : 48 !!!! ! !|||:!: ||| ... !..!!:!||||||!!! !:!:..!! spThrTyrGluGluLysArgArgArgLysPheAlaGlnAsnPheThrIlePheMetLeuValCy 786 : ACACTTACGAGGAGAAacgtcgaagaaaattcgcgcAGAATTTCACGATATTTATGCTGGTGTG : 848 49 : eSerAlaTrpValGlnIleArgGlyLeuTyrPheAsnTrpGlyAspPheSer : 65 !:!!!.! :!!:!!! |||! !:!!|||!:!!.!||||||||||||||| sAlaValValIleGluThrArgAspIleTyrTyrThrTrpGlyAspPheSer 849 : CGCTGTGGTAATTGAGACGAGGGATATCTATTACACCTGGGGTGATTTCAGC : 901 vulgar: AfOr96 5 65 . KQ414828.1 721 901 + 129 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 722 901 129 + . gene_id 14 ; sequence AfOr96 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 722 901 . + . KQ414828.1 exonerate:protein2genome:local exon 722 901 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 722 901 129 + . alignment_id 14 ; Query AfOr96 ; Align 722 6 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr83 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1262 Query range: 0 -> 406 Target range: 7890 -> 13158 1 : MetHisThrLysSerGluLeuAspIleSerIleSerLeuSerThrPhePheLeuLysAsn : 20 |||!!.|||:!!!.!!!:! !||||||||||||!:!||||||! !|||||||||:::||| MetGlnThrGluLysAspSerAspIleSerIleAsnLeuSerLysPhePheLeuArgAsn 7891 : ATGCAAACGGAGAAGGATTCGGACATATCGATCAACTTGTCGAAATTCTTCTTGCGCAAT : 7948 21 : ValGlyValTrpMetSerAspAsnSerGlyGluGlnArgArgMetLysMetLeuPheVal : 40 ||||||:!!|||! !:!!!!:||| !!.!|||.!.|||!:!! !||| !||| !!!.! ValGlyLeuTrpArgAlaGluAsnHisAlaGluAsnArgLysArgLysAlaLeuValAla 7949 : GTCGGCCTGTGGAGGGCTGAGAATCACGCGGAGAATCGTAAAAGGAAAGCGTTGGTCGCC : 8008 41 : TyrThrIleTrpMetLeuPheCysGlyThrIleIleSerThrArgAspLeuTyrPheThr : 60 ||||||||||||! :!!|||! !.!! !:!::!!..!|||||||||:!!||||||||| TyrThrIleTrpAsnMetPheLeuAlaIleValValGluThrArgAspMetTyrPheThr 8009 : TACACGATTTGGAACATGTTTTTGGCCATAGTGGTTGAAACGAGAGATATGTATTTCACC : 8068 61 : LeuLeuTyrAsnGly >>>> Target Intron 1 >>>> AspIleLeuTyrAlaM : 71 ! !!!!|||!!.||| 796 bp ||||||||||||!.!! TrpPheTyrLysGly++ ++AspIleLeuTyrValS 8069 : TGGTTCTATAAAGGCgt.........................agGATATTCTTTACGTTA : 8897 72 : etThrAsnThrIleThrThrIleMetAlaLeuIleLysIleCysIleIleLeuMetTyrL : 91 |||||| !:!:!:!..!|||:!:.!! !||||||:!! !:!!:!!|||!!::!!| erThrAsnLeuLeuSerValIleLeuThrThrIleLysLeuThrValValLeuIleHisL 8898 : GTACCAACTTACTGAGCGTGATCTTAACTACGATCAAGCTAACTGTCGTACTAATACACA : 8957 92 : ysGlyLysPheLeuAsnLeuIleValTyrMetGlnGlnAsnPheTrpAsnValThrTyrA : 111 ||! !:!!|||:!!!:!||||||! !|||||| ! :!!:!!|||||||||||| !|||| ysValGluPheMetSerLeuIleAspTyrMetTyrGluHisPheTrpAsnValAspTyrA 8958 : AAGTGGAATTCATGAGTCTGATTGATTACATGTACGAACATTTCTGGAACGTGGATTACG : 9017 112 : spTyrArgGluLysGluIleLeuAspAspCysArgLysIleCysIlePhePheIleThrS : 131 || !!.!||||||..!|||:!:|||:::|||:::||| ||||||.!!|||! !:!!| spLeuHisGluLysArgIleMetAspAsnCysLysLysThrCysIleIlePheThrSerS 9018 : ATCTTCACGAGAAAAGAATTATggataattgtaaaaaaactTGCATCATCTTCACTTCAA : 9077 132 : erValThrThrIleGlyMetCysThrValIleSerTyrLeuThrThrProValIle{T} : 150 |||||||||||||||||!!:|||.!!:!!|||||||||:!!.!!|||||| !!|||{!} erValThrThrIleGlyIleCysAlaIleIleSerTyrIleAlaThrProPheIle{M}+ 9078 : GCGTCACTACCATTGGCATATGCGCTATAATATCTTACATAGCGACACCGTTTATC{A}g : 9135 151 : >>>> Target Intron 2 >>>> {hr}GlnSerGlySerAsnGluSerGluArgM : 160 192 bp { !}!!.||| !||||||:!!||||||||| + ++{et}HisSerGlnSerAsnLysSerGluArgA 9136 : t.........................ag{TG}CACAGTCAAAGCAACAAATCTGAAAGAG : 9356 161 : etPheProPheAsnIleTrpIleAsnLeuProLeuValThrArgThrProTyrTyrGluI : 180 !|||! !|||:!!!!:|||:!!|||||||||||| ||| !:!!|||||||||||| laPheLeuPheAspMetTrpLeuAsnLeuProLeu---ThrValSerProTyrTyrGluG 9357 : CGTTTCTGTTCGACATGTGGCTCAATTTACCTCTG---ACTGTTTCGCCTTACTACGAAG : 9413 181 : leIlePhePheIleGln >>>> Target Intron 3 >>>> GlyValSerLeuTy : 190 !!!:!!. !:!!||| 1401 bp ! !.!!||||| lyMetLeuAlaValGln++ ++IleSerGlyLeuTy 9414 : GAATGTTGGCTGTACAGgt.........................agATTTCAGGACTGTA : 10844 191 : rTyrIleGlyIleSerTyrPheCysPheAspAsnIlePheCysIleMetAlaValHisLe : 210 |!:!! !||||||!!!|||||||||||||||||||||||||||||||||::!|||||||| rPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerValHisLe 10845 : TTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTGCATTT : 10904 211 : uAlaGlyGlnPheArgIleLeuArgTyrArgLeuThrLysLeuCysAspThrGluAsnGl : 230 |::!||||||||||||||||||!:!||||||||||||||||||! !|||..!:!! !!:! uSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGlnTyrGl 10905 : GAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAATATCA : 10964 231 : uIleArgLysLysAspSerGlnSerThrLeuAlaLysGlnMetTyrLysPheTyrGluGl : 250 !|||! :::|||::: :::|||..!|||! ! ! ! !!:!! !||||||:! nIleSerGluLysAsnMetGluSerValLeuGluAspCysThrArgArgSerTyrGluLy 10965 : GATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGTAGATCTTACGAGAA : 11024 251 : nPheLysLysCysValArgTyrHisGlnAlaLeuIleAspTyrTyrGlnAsnLeuGluAs : 270 !||||||!..! !|||||| ! ||||||.!!|||||||||||||||:!!!!.||||||:! sPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLysLeuGluHi 11025 : ATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAGCTTGAACA : 11084 271 : nValTyrThrMetIleThrLeuGlyGlnValLeuValPheGlyValLeuIleCysLeuPh : 290 !|||||||||! |||! !|||||||||||||||:!!|||.!!||||||||||||||||| sValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIleCysLeuPh 11085 : CGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATTTGCCTCTT : 11144 291 : eGlyTyrGlnValPheVal >>>> Target Intron 4 >>>> AlaThrSerSer : 300 ||||||||||:!!!!.:!! 1305 bp |||!.!!!!||| eGlyTyrGlnIleLeuLeu++ ++AlaAsnThrSer 11145 : TGGTTATCAGATATTATTGgt.........................agGCTAATACTTCT : 12479 301 : ThrAlaArgArgPheIlePheValPheLeuLeuSerGlySerMetPheLeuLeuPheMet : 320 !||||||||| !||||||:!!||||||:!!!!!|||:!!||| !!|||||||||||| LeuAlaArgArgSerIlePheMetPheLeuIleCysGlyAlaMetValLeuLeuPheMet 12480 : CTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTTTTATTGTTTATG : 12539 321 : PheThrTyrSerCysAsnGlyValIleGluGlnSerAspAsnValAlaValGlyAlaTyr : 340 |||||||||||||||||| !|||||||||||||||||||||:!!||| !!!.!|||||| PheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAlaPheAlaAlaTyr 12540 : TTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCTTTTGCGGCGTAT : 12599 341 : SerAlaLeuTrpThrIleLeuProMetAspLysPheGlyArgMetLeuArgAsnAspLeu : 360 ||||||||||||||| !:!!||||||:!!||| !|||!:!! !||||||:!!|||||| SerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeuArgHisAspLeu 12600 : TCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTACGGCATGATTTG : 12659 361 : IleMetValMetLysArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePhePro : 380 |||||||||!!: !||||||||||||||||||||||||||||||||||||||||||||| IleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePhePro 12660 : ATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATGGATTTTTCCCT : 12719 381 : ValSerLeuGluThrTyrThrLys >>>> Target Intron 5 >>>> IleLeuS : 391 |||||||||||||||||||||! ! 359 bp ||||||| ValSerLeuGluThrTyrThrThr++ ++IleLeuS 12720 : GTGTCCTTAGAAACTTATACTACGgt.........................agattttgA : 13111 392 : erThrAlaValSerTyrPheThrLeuLeuAsnAsnArgValGluAsn : 406 ||||||||!.!||||||||||||||||||!..|||!.!||||||:!! erThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnValGluAsp 13112 : GTACCGCGGCGTCGTACTTCACATTATTGAGAAATAACGTAGAAGAT : 13158 vulgar: AfOr83 0 406 . KQ414828.1 7890 13158 + 1262 M 65 195 5 0 2 I 0 792 3 0 2 M 84 252 S 0 1 5 0 2 I 0 188 3 0 2 S 1 2 M 21 63 G 1 0 M 13 39 5 0 2 I 0 1397 3 0 2 M 111 333 5 0 2 I 0 1301 3 0 2 M 92 276 5 0 2 I 0 355 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 7891 13158 1262 + . gene_id 1 ; sequence AfOr83 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 7891 8085 . + . KQ414828.1 exonerate:protein2genome:local exon 7891 8085 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 8086 8087 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 8086 8881 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 8880 8881 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 8882 9134 . + . KQ414828.1 exonerate:protein2genome:local exon 8882 9134 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 9135 9136 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 9135 9326 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 9325 9326 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 9327 9430 . + . KQ414828.1 exonerate:protein2genome:local exon 9327 9430 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 9431 9432 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 9431 10831 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 10830 10831 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 10832 11164 . + . KQ414828.1 exonerate:protein2genome:local exon 10832 11164 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 11165 11166 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 11165 12469 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 12468 12469 . + . intron_id 3 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 12470 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12745 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13104 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 13103 13104 . + . intron_id 4 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 13105 13158 . + . KQ414828.1 exonerate:protein2genome:local exon 13105 13158 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 7891 13158 1262 + . alignment_id 1 ; Query AfOr83 ; Align 7891 1 195 ; Align 8882 66 252 ; Align 9329 151 63 ; Align 9392 173 39 ; Align 10832 186 333 ; Align 12470 297 276 ; Align 13105 389 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr83 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 718 Query range: 60 -> 410 Target range: 21876 -> 24205 61 : LeuLeuTyrAsnGlyAspIleLeuTyrAlaMetThrAsnThrIleThrThrIleMetAla : 80 :::|||::: ! !:!!||| ! !|||!:!:!!.!! !:!!:!!! ! IleLeuPhePheGlnValCysMetTyrMetAlaCysAsnSerLeuAlaLeuValLeuAsp 21877 : attttgttttttcaggTTTGCATGTACATGGCATGCAACAGTTTAGCCCTGGTTTTGGAT : 21934 81 : LeuIleLysIleCysIleIleLeuMetTyrLysGlyLysPheLeuAsnLeuIleValTyr : 100 :!!|||||||||! !:!!:!!|||:!: ||| !|||||||||..!||||||! !||| IleIleLysIlePheValLeuLeuValArgLysLysLysPheLeuGlyLeuIleGluTyr 21935 : ATAATCAAGATTTTCGTCCTACTCGTACGGAAGAAAAAGTTTCTCGGTCTGATTGAGTAC : 21994 101 : MetGlnGlnAsnPheTrpAsnValThrTyrAspTyrArgGluLysGluIleLeuAspAsp : 120 ||||||:!!|||||||||:!!:!!!.!|||||| ! !|||!!....|||:!!! !! MetGlnLysAsnPheTrpHisLeuAsnTyrAspGlnAspGluAsnSerIleIleAlaHis 21995 : ATGCAGAAGAATTTTTGGCATTTGAACTACGACCAGGACGAGAATTCTATTATCGCACAC : 22054 121 : CysArgLysIleCysIlePhePheIleThrSerValThrThrIleGlyMetCysThrVal : 140 ...!:!::!! ||||||!:!|||:!! ! ! !!:!! ! !..!...! !|||||| AlaLysArgThrCysIleTyrPheValCysValPheSerPheCysSerGlnSerThrVal 22055 : GCGAAACGAACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTTCTCAATCTACAGTT : 22114 141 : IleSerTyrLeuThrThrProValIle{T} >>>> Target Intron 1 >>>> { : 150 .!!||||||:!!! !! !||| !!:!!{:} 170 bp { PheSerTyrIleIleArgProPheVal{S}++ ++{ 22115 : TTTTCCTATATAATAAGGCCATTTGTA{T}gt.........................ag{ : 22315 151 : hr}GlnSerGlySerAsnGluSerGluArgMetPheProPheAsnIleTrpIleAsnLeu : 169 !!}.!. !|||!.!|||||||||!!:||| ! !!:!:!!!!:|||:!!:!!||| er}AsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeu 22316 : ca}AATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTA : 22371 170 : ProLeuValThrArgThrProTyrTyrGluIleIlePhePheIleGln >>>> Targe : 186 |||||| :!! !|||||||||||||||||| ::!.!.|||||| ProLeu---SerValThrProTyrTyrGluIleThrTyrIleIleGln++ 22372 : CCATTA---TCCGTAACAccatattatgaaattacttACATAATACAGgt.......... : 22421 187 : t Intron 2 >>>> GlyValSerLeuTyrTyrIleGlyIleSerTyrPheCysPheA : 200 307 bp !.!:!!|||:!!||| ! :!!.!! !!!|||.!!||||||| ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheA 22422 : ...............agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttg : 22768 201 : spAsnIlePheCysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeuArgTyrA : 220 || |||||| |||:::...:!!|||:!!|||||||||||||||||||||!:!|||| spIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrA 22769 : atatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACA : 22828 221 : rgLeuThrLysLeuCysAspThrGluAsnGluIleArgLysLysAspSerGlnSerThrL : 240 ||:!!.!!!!.:!!! ! ! !....!. !:!:!:!!..!..!!:!:!! !|||||| rgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSerThrA 22829 : GAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAG : 22888 241 : euAlaLysGlnMetTyrLysPheTyrGluGlnPheLysLysCysValArgTyrHisGlnA : 260 !! ! ! ! ! |||! !||| :!!||||||!!.|||:!!!:! ! ||||||| spGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnA 22889 : ATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGG : 22948 261 : laLeuIleAspTyrTyrGlnAsnLeuGluAsnValTyrThrMetIleThrLeuGlyGlnV : 280 ||||||||!!:!:!! ! !!..||||||.!.|||!:!|||:!:|||..!|||||||||| laLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleValLeuGlyGlnV 22949 : CACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAG : 23008 281 : alLeuValPheGlyValLeuIleCysLeuPheGlyTyrGlnValPheVal >>>> Tar : 297 |||||:!!! !.!!:!!|||||||||!!!.!!||||||||||||.!!:!! alLeuMetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeu++ 23009 : TCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGgt........ : 23061 298 : get Intron 3 >>>> AlaThrSerSerThrAlaArgArgPheIlePheValPheLe : 310 492 bp !! !! !||| !! ! !||| !! !|||!.!! !!! ++IleLysLeuSerPheGluSerArgValAlaPheAlaCysPh 23062 : .................agATAAAGTTATCATTTGAATCGCGCGTTGCTTTCGCGTGCTT : 23590 311 : uLeuSerGlySerMetPheLeuLeuPheMetPheThrTyrSerCysAsnGlyValIleGl : 330 !|||! ! !.!!||| !! !|||!::||||||||||||||||||:!! !!:!!! ! eLeuMetMetGlyMetSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrTh 23591 : CTTGATGATGGGCATGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCATAACAAC : 23650 331 : uGlnSerAspAsnValAlaValGlyAlaTyrSerAlaLeuTrpThrIleLeuProMetAs : 350 !:!!||| |||:!!|||! !..!!.!|||:!!!.!! !|||! !! !||||||||||| rGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAs 23651 : AGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATGGA : 23710 351 : pLysPheGlyArgMetLeuArgAsnAspLeuIleMetValMetLysArgSerArgArgVa : 370 ||||||||||!:!:!!||||||!!.!!:||| !|||:!!!!: !|||:!!|||||| pLysPheGlyLysLeuLeuArgLysGluLeuGlnMetLeuIleLeuArgAlaArgArgPr 23711 : CAAATTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGGGCGAGACGACC : 23770 371 : lCysCysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrLys >>> : 389 !! !..!||||||||| !||||||||| !!:!!||||||||||||!:!|||||| oSerAlaLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 23771 : TTCCGCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt... : 23829 390 : > Target Intron 4 >>>> IleLeuSerThrAlaValSerTyrPheThrLeuLeu : 400 313 bp |||:!!||||||:!!:!!|||||||||||||||||| ++IleMetSerThrSerMetSerTyrPheThrLeuLeu 23830 : ......................agATCATGAGTACATCAATGTCGTATTTCACATTATTA : 24173 401 : AsnAsnArgValGluAsnAlaSerGlySer : 410 !!..!. !!:!!|||:!!.!! !..!||| LysGlnCysIleGluAspThrValAsnSer 24174 : AAACAATGTATCGAGGACACGGTAAATTCG : 24205 vulgar: AfOr83 60 410 . KQ414828.1 21876 24205 + 718 M 89 267 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 21 63 G 1 0 M 13 39 5 0 2 I 0 303 3 0 2 M 111 333 5 0 2 I 0 488 3 0 2 M 92 276 5 0 2 I 0 309 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21877 24205 718 + . gene_id 2 ; sequence AfOr83 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 21877 22144 . + . KQ414828.1 exonerate:protein2genome:local exon 21877 22144 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22145 22146 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22145 22314 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22313 22314 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 22315 22418 . + . KQ414828.1 exonerate:protein2genome:local exon 22315 22418 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 22419 22420 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22419 22725 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 23058 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23059 23060 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23059 23550 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 23549 23550 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 23551 23826 . + . KQ414828.1 exonerate:protein2genome:local exon 23551 23826 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23827 23828 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23827 24139 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 24138 24139 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 24140 24205 . + . KQ414828.1 exonerate:protein2genome:local exon 24140 24205 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21877 24205 718 + . alignment_id 2 ; Query AfOr83 ; Align 21877 61 267 ; Align 22317 151 63 ; Align 22380 173 39 ; Align 22726 186 333 ; Align 23551 297 276 ; Align 24140 389 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr83 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 576 Query range: 152 -> 408 Target range: 2888 -> 6477 153 : GlySerAsnGluSerGluArgMetPheProPheAsnIleTrpIleAsnLeuProLeuValTh : 173 |||...|||||||||!!:|||:!:.!! ! !!|||.!!||||||:!!|||||| :!!|| GlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuPro---IleTh 2889 : ggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCCG---ATAAC : 2946 174 : rArgThrProTyrTyrGluIleIlePhePheIleGln >>>> Target Intron 1 >> : 186 |! !||||||||||||||||||:::||| |||||| 406 bp rIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2947 : CATCACACCATactatgaaatattatttacgaTACAGgt....................... : 2987 187 : >> GlyValSerLeuTyrTyrIleGlyIleSerTyrPheCysPheAspAsnIlePheCysI : 205 ! !!! !:!! |||:!! !!|||||||||.!!|||.!!||||||.!!.!.|||! ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheLeuCysM 2988 : ..agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTCTGTGCA : 3448 206 : leMetAlaValHisLeuAlaGlyGlnPheArgIleLeuArgTyrArgLeuThrLysLeuCys : 225 !:!!: !:!!||| !||| !|||||||||||||||!:!|||||||||:!!!!.:!!||| etIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnValCys 3449 : TGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAATGTGTGC : 3508 226 : AspThrGluAsnGluIleArgLysLysAspSerGlnSerThrLeuAlaLysGlnMetTyrLy : 246 ! !.!! |||||| !! ||| |||:::...||| !!....!. ! !!:! GlyAla---AsnGluArgSerAspLysIleSerLysLysThr---ProSerAsnSerAspGl 3509 : GGTGCA---AACGAACGTAgcgataaaatttcgaaaaaaaca---CCGTCCAATTCGGACGA : 3565 247 : sPheTyrGluGlnPheLysLysCysValArgTyrHisGlnAlaLeuIleAspTyrTyrGlnA : 267 !! !|||! :!!||||||!!.|||:!!!:! ! |||||||||||||||!!:|||! !.!.! uCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnL 3566 : ATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACA : 3628 268 : snLeuGluAsnValTyrThrMetIleThrLeuGlyGlnValLeuValPheGlyValLeuIle : 287 !.|||:!!.!.|||!:! !!!:.!!..!|||!.!|||||||||:!!|||.!!:!!|||!!: ysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeuLeuMet 3629 : AACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATG : 3688 288 : CysLeuPheGlyTyrGlnValPheValAlaThrSerSerThrAlaArgArgPheIlePheVa : 308 |||||| !|||||| !|||.!.|||::!! !! !! !! ! !!:!||| !|||...|| CysLeuAspGlyTyrLeuValMetValSerArgTyrTyrLysIleGlnArgAsnIleIleVa 3689 : TGCCTCGATGGATATTTGGTGATGGTTAGTAGGTATTACAAAATTCAACGCAATATCAtagt : 3751 309 : lPheLeuLeuSer{G} >>>> Target Intron 2 >>>> {ly}SerMetPheLeuL : 318 |||||||...|||{|} 454 bp {||}!!!:!!! !! !| lPheLeuPheSer{G}-+ -+{ly}CysLeuCysGlnL 3752 : tttcttattttct{g}at.........................gg{GA}TGCCTGTGCCAAC : 4235 319 : euPheMetPheThrTyrSerCysAsnGlyValIleGluGlnSerAspAsnValAlaValGly : 338 ||!!.||||||||||||||||||:!! !!:!!|||..!:!!||| ||||||||| !!.! euLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAla 4236 : TGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCT : 4295 339 : AlaTyrSerAlaLeuTrpThrIleLeuProMetAspLysPheGlyArgMetLeuArgAsnAs : 359 !|||..!..!! !|||! ! !||||||||||||!:!! !|||||||||||||||!!.|| IleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAs 4296 : ATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGA : 4358 360 : pLeuIleMetValMetLysArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePheP : 380 ||||! !.!.|||!!: !||||||||| ! !||||||||||||||| !|||||||||| pLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePheP 4359 : TTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCC : 4421 381 : roValSerLeuGluThrTyrThrLys >>>> Target Intron 3 >>>> IleLeuS : 391 |||||||||||||||||||||||..! 1970 bp :!!:!!| roValSerLeuGluThrTyrThrSer++ ++ValIleS 4422 : CTGTGTCACTGGAAACGTACACTTCGgt.........................agGTTATAA : 6424 392 : erThrAlaValSerTyrPheThrLeuLeuAsnAsnArgValGluAsnAlaSer : 408 |||||||||||||||||||||||||||||!...!.|||:!!|||:!!::!!:! erThrAlaValSerTyrPheThrLeuLeuArgGlnArgIleGluAspSerAsn 6425 : GTACAGCAGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAGGACAGCAAT : 6477 vulgar: AfOr83 152 408 . KQ414828.1 2888 6477 + 576 M 18 54 G 1 0 M 14 42 5 0 2 I 0 402 3 0 2 M 42 126 G 1 0 M 11 33 G 1 0 M 72 216 S 0 1 5 0 2 I 0 450 3 0 2 S 1 2 M 75 225 5 0 2 I 0 1966 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2889 6477 576 + . gene_id 3 ; sequence AfOr83 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2889 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2889 2984 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3766 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3766 . + . insertions 0 ; deletions 2 KQ414828.1 exonerate:protein2genome:local splice5 3767 3768 . + . intron_id 2 ; splice_site "at" KQ414828.1 exonerate:protein2genome:local intron 3767 4220 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4219 4220 . + . intron_id 1 ; splice_site "GG" KQ414828.1 exonerate:protein2genome:local cds 4221 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4221 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6477 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6477 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2889 6477 576 + . alignment_id 3 ; Query AfOr83 ; Align 2889 153 54 ; Align 2943 172 42 ; Align 3391 186 126 ; Align 3517 229 33 ; Align 3550 241 216 ; Align 4223 314 225 ; Align 6418 389 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr83 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 537 Query range: 52 -> 392 Target range: 16147 -> 19644 53 : SerThrArgAspLeuTyrPheThrLeuLeuTyrAsnGlyAspIleLeuTyrAlaMetThr : 72 :::......:::|||:!!!!. !|||!!! ! !! ! !||||||.!! ! AsnAsnAsnAsnLeuHisLeuPheLeuPheArgLeuGlnAlaCysLeuTyrThrAlaCys 16148 : aataataataacttgCACTTATTCCTTTTCCGTTTGCAGGCCTGTTTATATACTGCATGC : 16205 73 : AsnThrIleThrThrIleMetAlaLeuIleLysIleCysIleIleLeuMetTyrLysGly : 92 |||! !:!!:!! !! !!!: !!!!!:!!|||||| !:!!:!:||| :::|||... AsnIleLeuSerLeuThrIleProPheLeuLysIleLeuValLeuLeuAlaHisLysAsn 16206 : AACATTTTATCGTTAACAATACCGTTTCTCAAGATACTCGTCTTGCTTGCAcacaaaaat : 16265 93 : LysPheLeuAsnLeuIleValTyrMetGlnGlnAsnPheTrpAsnValThrTyrAspTyr : 112 |||...:::||||||:!!:!!:!:|||!:!.!.|||! !:!!!.! !|||||| !! AspPhePheHisLeuIleLeuHisLeuGlnArgGluPheLeuHisAlaAspTyrAspAsp 16266 : gatttttttcatttgattcTGCACCTACAACGAGAATTCTTGCATGCAGATTACGACGAC : 16325 113 : ArgGluLysGluIleLeuAspAspCysArgLysIleCysIlePhePheIleThrSerVal : 132 !||||||:!!|||||| !! !|||!:!::: !|||! !||||||:!! !! ! !! TyrGluLysLysIleLeuLeuGlyCysGlnArgGlnCysThrPhePheValCysPhePhe 16326 : TACGAGAAAAAGATTTTGCTCGGTTGCCAACGTCAATGTACCTTCTTCGTTTGTTTCTTC : 16385 133 : ThrThrIleGlyMetCysThrValIleSerTyrLeuThrThrProValIleThrGlnSer : 152 ||| !.!! !! ! |||||||||||||||:!!..!!.!|||:!!||| !:!!||| ThrLeuPheThrLysGlyThrValIleSerTyrIleValAsnProLeuIleGlyLysSer 16386 : ACACTTTTCACTAAAGGAACTGTTATCTCGTACATCGTTAATCCGCTTATTGGTAAGTCG : 16445 153 : GlySerAsnGluSerGluArgMetPheProPheAsnIleTrpIle-AsnLeuProLeuVa : 172 !..!::: !!:! ! !! !!. !.!. !.!!||||||#|||:!!|||! ! IleAspSerLeuAsnThrSerSerLeuIleLeuCysPheTrpIle#AsnValProGlnAr 16446 : ATTGATTCGTTGAATACATCGAGCTTGATCCTATGCTTCTGGATTGAATGTTCCTCAGAG : 16506 173 : lThrArgThrProTyrTyrGluIleIlePhePheIleGln{G} >>>> Target Int : 186 !|||:::... |||:::... ! ! !||| !..!{!} 1492 b gThrGlnAsnLeuTyrPheArgHisAlaHisPheSerSer{V}-+ 16507 : AAcgcaaaatttatattttcgtcATGCACACTTTTCTTCA{G}tt............... : 16551 187 : ron 1 >>>> {ly}ValSerLeuTyrTyrIleGlyIleSerTyrPheCysPheAspAs : 201 p { !}:!!|||||||||:!!||||||:!:|||||||||||||||||||| -+{al}LeuSerLeuTyrHisIleGlyValSerTyrPheCysPheAspAs 16552 : ..........gg{tT}CTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgcttcgacaa : 18085 202 : nIlePheCysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeuArgTyrArgLe : 221 |......||||||||| !:!!||| !||| !|||||||||:!!|||!:!||||||:! nPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnTyrArgMe 18086 : ttttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAATACCGAAT : 18145 222 : uThrLysLeuCysAspThrGluAsnGluIleArgLysLysAspSerGlnSerThrLeuAl : 241 !.!!!!.:!! !||| !:!!:::::: ||||||::: :::.....!||| !!. tAlaAsnMetThrAspLeuLysAspLysGluArgLysGluArgAsnMetLysThrSerVa 18146 : GGCGAATATGACCGATTTAAAGGacaaagagaggaaagagagaaatatgaAGACAAGTGT : 18205 242 : aLysGln<-><-><->MetTyrLysPheTyrGluGlnPheLysLysCysValArgTyrHi : 258 !!....! :!!! !|||.!. .!!||| ! ! !:!!||| ! || lSerSerAlaCysPheAlaThrGluCysTyrAsnValLeuLysAspTyrIleArgGlnHi 18206 : GAGTTCGGCGTGCTTTGCAACAGAATGTTACAACGTTCTCAAAGATTATATCAGACAGCA : 18265 259 : sGlnAlaLeuIleAspTyrTyrGlnAsnLeuGluAsnValTyrThrMetIleThrLeuGl : 278 |||| !||||||! !|||! !.!.!!.||||||!!.|||!:!!.!!!:|||..!||||| sGlnAsnLeuIleAlaTyrCysAsnLysLeuGluLysValPheAsnIleIleValLeuGl 18266 : TCAGAACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGTTCAATATCATTGTTCTGGG : 18325 279 : yGlnValLeuValPheGlyValLeuIleCysLeuPheGlyTyrGlnValPheValAlaTh : 298 ||||:!!|||:!!|||.!!:!!|||||||||||| !|||!:!|||:!!.!!:!!!.! yGlnLeuLeuMetPheSerMetLeuIleCysLeuAspGlyPheGlnIleLeuMetValGl 18326 : GCAATTGTTAATGTTCAGCATGTTGATCTGTCTCGATGGATTTCAGATACTTATGGTTGG : 18385 299 : rSerSer{Th} >>>> Target Intron 2 >>>> {r}AlaArgArgPheIlePh : 307 !! !!!!{! } 978 bp {!}.!!||| .!.||||| yMetArg{Ar}-+ ++{g}ThrArg---LeuIlePh 18386 : TATGAGA{AG}tt.........................ag{A}ACCCGA---CTGATTTT : 19387 308 : eValPheLeuLeuSerGlySerMetPheLeuLeuPheMetPheThrTyrSerCysAsnGl : 327 |:!!|||! !:!!.!!!.!!!!|||! !! !|||.!.||||||||||||||||||:!! ! eIlePheHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCy 19388 : CATCTTTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGCTGCGACTG : 19447 328 : yValIleGluGlnSerAspAsnValAlaValGlyAlaTyrSerAlaLeuTrpThrIleLe : 347 !:!!|||..!:!!||| !:!..!|||! !!.!!.!||||||!.!! !||||||:!!|| sIleIleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyProTrpThrLeuLe 19448 : CATCATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGACACTTTT : 19507 348 : uProMetAspLysPheGlyArgMetLeuArgAsnAspLeuIleMetValMetLysArgSe : 367 |||||||..! ! !|||!:!|||:!!|||!!.||||||!!::!:|||!!:! !||||| uProMetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuValIleMetArgSe 19508 : ACCAATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCATGAGATC : 19567 368 : rArgArgValCysCysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrTh : 387 |!!! ! !|||||||||||||||!..||||||||| !|||||||||||||||||||| rSerValProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGluThrTyrTh 19568 : GAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAACGTACAC : 19627 388 : rLysIleLeuSerThr : 392 | !:!!:!! !||| rGlyValIleValThr 19628 : AGGGGTAATCGTCACC : 19644 vulgar: AfOr83 52 392 . KQ414828.1 16147 19644 + 537 M 115 345 F 0 1 M 18 54 S 0 1 5 0 2 I 0 1488 3 0 2 S 1 2 M 57 171 G 0 9 M 57 171 S 0 2 5 0 2 I 0 974 3 0 2 S 1 1 M 2 6 G 1 0 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 16148 19644 537 + . gene_id 4 ; sequence AfOr83 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 16148 16548 . + . KQ414828.1 exonerate:protein2genome:local exon 16148 16548 . + . insertions 0 ; deletions 0 ; frameshifts 1 KQ414828.1 exonerate:protein2genome:local splice5 16549 16550 . + . intron_id 1 ; splice_site "TT" KQ414828.1 exonerate:protein2genome:local intron 16549 18040 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18039 18040 . + . intron_id 0 ; splice_site "gg" KQ414828.1 exonerate:protein2genome:local cds 18041 18395 . + . KQ414828.1 exonerate:protein2genome:local exon 18041 18395 . + . insertions 9 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18396 18397 . + . intron_id 2 ; splice_site "TT" KQ414828.1 exonerate:protein2genome:local intron 18396 19373 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 19372 19373 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19374 19644 . + . KQ414828.1 exonerate:protein2genome:local exon 19374 19644 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 16148 19644 537 + . alignment_id 4 ; Query AfOr83 ; Align 16148 53 345 ; Align 16494 168 54 ; Align 18043 187 171 ; Align 18223 244 171 ; Align 19375 302 6 ; Align 19381 305 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr83 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 529 Query range: 147 -> 410 Target range: 32386 -> 34325 148 : ValIleThrGlnSerGlySerAsnGluSerGluArgMetPheProPheAsnIleTrpIle : 167 ::::::....!. !|||!.!|||||||||!!:||| ! !!:!:!!!!:|||:!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 32387 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 32444 168 : AsnLeuProLeuValThrArgThrPro{T} >>>> Target Intron 1 >>>> { : 177 :!!||||||||| !..!! ! {!} 304 bp { AspLeuProLeuSerValThrProTyr{C}-+ ++{ 32445 : GATCTACCATTATCCGTAACAccatat{t}at.........................ag{ : 32779 178 : yr}TyrGluIleIlePhePheIleGlnGlyValSerLeuTyrTyrIleGlyIleSerTyr : 196 !} ::: ||| ..!! |||!.!:!!|||:!!||| ! :!!|||:!:!!!||| ys}AsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValGlyValCysTyr 32780 : gt}aataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTGGAGTGTGTTAC : 32835 197 : PheCysPheAspAsnIlePheCysIleMetAlaValHisLeuAlaGlyGlnPheArgIle : 216 .!!|||||||||||||||||| ||||||..!:!!|||:!!|||||||||||||||||| LeuCysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArgIle 32836 : CTTTGCTttgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATA : 32895 217 : LeuArgTyrArgLeuThrLysLeuCysAspThrGluAsnGluIleArgLysLysAspSer : 236 |||!:!||||||:!!.!!!!.:!!! ! ! !....!. !:!:!:!!..!!.|||!:! LeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerAsnAspAsn 32896 : CTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAAT : 32955 237 : GlnSerThrLeuAlaLysGlnMetTyrLysPheTyrGluGlnPheLysLysCysValArg : 256 !|||||| !! ! ! ! ! |||! !||| :!!||||||!!.|||:!!!:! ThrSerThrAlaGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGln 32956 : ACAAGCACGGCTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAA : 33015 257 : TyrHisGlnAlaLeuIleAspTyrTyrGlnAsnLeuGluAsnValTyrThrMetIleThr : 276 ! |||||||||||||||:::::: ::: ||||||.!.|||!:!|||:!:|||..! GlnHisGlnAlaLeuIleGluPheCysGluIleLeuGluGluValPheThrValIleVal 33016 : CAACATCAGGCACTaattgaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTA : 33075 277 : LeuGlyGlnValLeuValPheGlyValLeuIleCysLeuPheGlyTyrGlnValPheVal : 296 |||||||||||||||:!!|||.!!:!!:!!||||||!!! !||||||:!!|||.!!:!! LeuGlyGlnValLeuMetPheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeu 33076 : CTCGGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTG : 33135 297 : >>>> Target Intron 2 >>>> AlaThrSerSerThrAlaArgArgPheIleP : 307 406 bp !|||! ! !! !! ! !||| !! !| ++ ++IleThrLeuProPheGluSerArgValAlaP 33136 : gt.........................agATAACGTTACCATTTGAATCGCGCGTTGCTT : 33574 308 : heValPheLeuLeuSerGlySerMetPheLeuLeuPheMetPheThrTyrSerCysAsnG : 327 ||..!! !!!!|||! ! !.!!:!! !! !|||!::||||||||||||||||||||| heThrCysPheLeuIleThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAsnC 33575 : TCACGTGCTTCTTGATTACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCAATT : 33634 328 : lyValIleGluGlnSerAspAsnValAlaValGlyAlaTyrSerAlaLeuTrpThrIleL : 347 !!:!!! ! !:!!||| |||:!!|||! !..!!.!|||:!!!.!! !|||! !! !| ysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnL 33635 : GCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATT : 33694 348 : euProMetAspLysPheGlyArgMetLeuArgAsnAspLeuIleMetValMetLysArgS : 367 ||||||||||||||||||||::::::||||||!!.|||||| !:!!:!!!!: !|||: euProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgA 33695 : TACCAATggataaatttggaaaactgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGG : 33754 368 : erArgArgValCysCysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrT : 387 !!|||||| !! !..!||||||||| !||||||||| !!:!!!!!|||||||||!:!| laArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleThrLeuGluThrPheT 33755 : CGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTA : 33814 388 : hrLys >>>> Target Intron 3 >>>> IleLeuSerThrAlaValSerTyrPh : 397 ||||| 440 bp |||:!!||||||:!!:!!|||||||| hrLys++ ++IleMetSerThrSerMetSerTyrPh 33815 : CTAAGgt.........................agATCATGAGTACATCAATGTCGTATTT : 34284 398 : eThrLeuLeuAsnAsnArgValGluAsnAlaSerGlySer : 410 ||||||||||!!..!.!!!!.!|||:!!.!! !..!||| eThrLeuLeuLysGlnSerAlaGluAspThrValAsnSer 34285 : CACCCTACTAAAACAAAGTGCCGAGGACACAGTAAATTCG : 34325 vulgar: AfOr83 147 410 . KQ414828.1 32386 34325 + 529 M 29 87 S 0 1 5 0 2 I 0 300 3 0 2 S 1 2 M 119 357 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32387 34325 529 + . gene_id 5 ; sequence AfOr83 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32387 32474 . + . KQ414828.1 exonerate:protein2genome:local exon 32387 32474 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32475 32476 . + . intron_id 1 ; splice_site "at" KQ414828.1 exonerate:protein2genome:local intron 32475 32778 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32777 32778 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32779 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32779 33137 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 3 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34325 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34325 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32387 34325 529 + . alignment_id 5 ; Query AfOr83 ; Align 32387 148 87 ; Align 32781 178 357 ; Align 33544 297 276 ; Align 34260 389 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr83 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 476 Query range: 56 -> 298 Target range: 37008 -> 38207 57 : LeuTyrPheThrLeuLeuTyrAsnGlyAspIleLeuTyrAlaMetThrAsnThrIleThr : 76 |||||| ...|||::: !! ! !:!!||| ! !||| !:!!.!! LeuTyrVal***PheLeuPheLeuGlnValCysMetTyrMetAlaGlyAsnGlyLeuAla 37009 : ttatacgtctaatttctatttctacaGGTTTGCATGTACATGGCAGGCAACGGTTTAGCC : 37066 77 : ThrIleMetAlaLeuIleLysIleCysIleIleLeuMetTyrLysGlyLysPheLeuAsn : 96 ! !:!!:!!! !:!!|||||||||! ! !:!!:!!:!::!!||| !|||||||||..! MetValLeuAspIleIleLysIlePheSerLeuValValHisLysLysLysPheLeuGly 37067 : ATGGTTTTGGATATAATCAAGATTTTCTCCCTAGTCGTACACAAGAAAAAGTTTCTCGGT : 37126 97 : LeuIleValTyrMetGlnGlnAsnPheTrpAsnValThrTyrAspTyrArgGluLysGlu : 116 ||||||! !|||||||||:!!||||||! !:!!:!!!.!|||||| ! !|||!!.... LeuIleGluTyrMetGlnLysAsnPheLeuHisLeuAsnTyrAspGlnTyrGluAsnSer 37127 : CTGATTGAGTACATGCAGAAGAATTTCTTGCATTTGAACTACGATCAGTACGAGAATTCT : 37186 117 : IleLeuAspAspCysArgLysIleCysIlePhePheIleThrSerValThrThrIleGly : 136 :!!:!!! .!....!:!::!!!:||||||!:!|||:!: :::::: ...... ValIleAlaGlnAlaLysArgMetCysIleTyrPheValCysValLeuSerPhePheSer 37187 : GTTATCGCACAGGCGAAACGAATGTGCATTTACTTCGTGTGcgttttgtcatttttttct : 37246 137 : MetCysThrValIleSerTyrLeuThrThrProValIle{T} >>>> Target Intr : 150 ... :!!|||:!!||||||:!!..!! !|||:!!:!!{:} 169 bp GlnSerSerValLeuSerTyrIleValArgProLeuVal{S}++ 37247 : caatctTCAGTTCTTTCCTATATAGTAAGGCCACTTGTA{T}gt................ : 37291 151 : on 1 >>>> {hr}GlnSerGlySerAsnGluSerGluArgMetPheProPheAsnIle : 165 {!!}.!. !|||!.!|||||||||!!:||| ! !!:!:!!!!: ++{er}AsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMet 37292 : .........ag{ca}AATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATG : 37502 166 : TrpIleAsnLeuProLeuValThrArgThrProTyrTyrGluIleIlePhePheIleGln : 185 |||:!!:!!||||||||| :!!! !|||||||||||||||||| ::!.!.|||||| TrpLeuAspLeuProLeu---SerIleThrProTyrTyrGluIleThrTyrIleIleGln 37503 : TGGCTCGATCTACCATTA---TCCATAACAccatattatgaaattacttACATAATACAG : 37559 186 : >>>> Target Intron 2 >>>> GlyValSerLeuTyrTyrIleGlyIleSerT : 196 307 bp !.!:!!|||:!!||| ! :!!.!! !!!| ++ ++AlaLeuSerValTyrGlnValSerAlaCysT 37560 : gt.........................agGCTTTATCTGTGTACCAAGTTAGCGCGTGTT : 37899 197 : yrPheCysPheAspAsnIlePheCysIleMetAlaValHisLeuAlaGlyGlnPheArgI : 216 ||.!!||||||||| |||||| |||:::...:!!|||:!!|||||||||||||||| yrLeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgI 37900 : ACCTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTA : 37959 217 : leLeuArgTyrArgLeuThrLysLeuCysAspThrGluAsnGluIleArgLysLysAspS : 236 |||||!:!||||||:!!.!!!!.:!!! ! ! !....!. !:!:!:!!..!..!!:! leLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluA 37960 : TACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAA : 38019 237 : erGlnSerThrLeuAlaLysGlnMetTyrLysPheTyrGluGlnPheLysLysCysValA : 256 :!! !|||||| !! ! ! ! ! |||! !||| :!!||||||!!.|||:!!! snProSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleG 38020 : ATCCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTC : 38079 257 : rgTyrHisGlnAlaLeuIleAspTyrTyrGlnAsnLeuGluAsnValTyrThrMetIleT : 276 :! ! |||||||||||||||!!:!:!! ! !!..||||||.!.|||!:!|||:!:|||. lnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleA 38080 : AACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTG : 38139 277 : hrLeuGlyGlnValLeuValPheGlyValLeuIleCysLeuPheGlyTyrGlnValPheV : 296 !!|||||||||||||||:!!|||.!!:!!|||||||||!!! !!! !||||||!.!.!!: laLeuGlyGlnValLeuMetPheSerIleLeuIleCysPheValValTyrGlnAlaLeuL 38140 : CACTCGGACAAGTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCC : 38199 297 : alAlaThr : 298 !!!.!!:! euValSer 38200 : TGGTGAGT : 38207 vulgar: AfOr83 56 298 . KQ414828.1 37008 38207 + 476 M 93 279 S 0 1 5 0 2 I 0 165 3 0 2 S 1 2 M 21 63 G 1 0 M 13 39 5 0 2 I 0 303 3 0 2 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37009 38207 476 + . gene_id 6 ; sequence AfOr83 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37009 37288 . + . KQ414828.1 exonerate:protein2genome:local exon 37009 37288 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37289 37290 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37289 37457 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37456 37457 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 37458 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37458 37561 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 38207 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 38207 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37009 38207 476 + . alignment_id 6 ; Query AfOr83 ; Align 37009 57 279 ; Align 37460 151 63 ; Align 37523 173 39 ; Align 37869 186 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr83 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 245 Query range: 56 -> 190 Target range: 26897 -> 27465 57 : LeuTyrPheThrLeuLeuTyrAsnGlyAspIleLeuTyrAlaMetThrAsnThrIleThr : 76 |||||| ...|||::: !! ! !:!!||| ! !||| !:!!.!! LeuTyrVal***PheLeuPheLeuGlnValCysMetTyrMetAlaGlyAsnGlyLeuAla 26898 : ttatacgtctaatttctatttctacaGGTTTGCATGTACATGGCTGGCAACGGTTTAGCC : 26955 77 : ThrIleMetAlaLeuIleLysIleCysIleIleLeuMetTyrLysGlyLysPheLeuAsn : 96 ! !:!!:!!! !:!!|||||||||! !! !:!!:!!:!::!!||| !|||||||||..! MetValLeuAspIleIleLysIlePheThrLeuValValHisLysLysLysPheLeuGly 26956 : ATGGTTTTGGATATAATCAAGATTTTCACCCTAGTCGTACACAAGAAAAAGTTTCTCGGT : 27015 97 : LeuIleValTyrMetGlnGlnAsnPheTrpAsnValThrTyrAspTyrArgGluLysGlu : 116 ||||||! !|||||||||:!!|||||||||:!!:!!!.!|||||| ! !|||!!.... LeuIleGluTyrMetGlnLysAsnPheTrpHisLeuAsnTyrAspGlnTyrGluAsnSer 27016 : CTGATTGAGTACATGCAGAAGAATTTTTGGCATTTGAACTACGATCAGTACGAGAATTCT : 27075 117 : IleLeuAspAspCysArgLysIleCysIlePhePheIleThrSerValThrThrIleGly : 136 :!!|||! .!....!:!::!!!:||||||!:!|||:!: :::::: ...... ValLeuAlaGlnAlaLysArgMetCysIleTyrPheValCysValLeuSerPhePheSer 27076 : GTTTTGGCACAGGCGAAACGAATGTGCATTTACTTCGTGTGcgttttgtcatttttttct : 27135 137 : MetCysThrValIleSerTyrLeuThrThrProValIle{T} >>>> Target Intr : 150 ... :!!|||:!!||||||:!!! !! !|||:!!:!!{:} 169 bp GlnSerSerValLeuSerTyrIleIleArgProLeuVal{S}++ 27136 : caatctTCAGTTCTTTCCTATATCATAAGGCCACTTGTA{T}gt................ : 27180 151 : on 1 >>>> {hr}GlnSerGlySerAsnGluSerGluArgMetPheProPheAsnIle : 165 {!!}.!. !|||!.!|||||||||!!:||| ! !|||:!!!!: ++{er}AsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMet 27181 : .........ag{ca}AATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATG : 27391 166 : TrpIleAsnLeuProLeuValThrArgThrProTyrTyrGluIleIlePhePheIleGln : 185 |||.!!:!!||||||||| :!! !|||||||||||||||||| ::!.!.|||||| TrpPheAspLeuProLeu---SerValThrProTyrTyrGluIleThrTyrIleIleGln 27392 : TGGTTCGATCTACCATTA---TCCGTAACAccatattatgaaattacttACATAATACAG : 27448 186 : GlyValSerLeuTyr : 190 ! !:!! !!:!!!:! ValLeuProIlePhe 27449 : GTATTACCAATTTTC : 27465 vulgar: AfOr83 56 190 . KQ414828.1 26897 27465 + 245 M 93 279 S 0 1 5 0 2 I 0 165 3 0 2 S 1 2 M 21 63 G 1 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26898 27465 245 + . gene_id 7 ; sequence AfOr83 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 26898 27177 . + . KQ414828.1 exonerate:protein2genome:local exon 26898 27177 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 27178 27179 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 27178 27346 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 27345 27346 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 27347 27465 . + . KQ414828.1 exonerate:protein2genome:local exon 27347 27465 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 26898 27465 245 + . alignment_id 7 ; Query AfOr83 ; Align 26898 57 279 ; Align 27349 151 63 ; Align 27412 173 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr83 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 201 Query range: 317 -> 389 Target range: 28568 -> 28784 318 : LeuPheMetPheThrTyrSerCysAsnGlyValIleGluGlnSerAspAsnValAlaVal : 337 |||!::||||||||||||||||||:!! !!:!!! ! !:!!||| |||:!!|||! ! LeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGlu 28569 : CTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAA : 28626 338 : GlyAlaTyrSerAlaLeuTrpThrIleLeuProMetAspLysPheGlyArgMetLeuArg : 357 ..!!.!|||:!!!.!! !|||! !! !|||||||||||||||||||||::::::|||||| SerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArg 28627 : TCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaactgCTAAGA : 28686 358 : AsnAspLeuIleMetValMetLysArgSerArgArgValCysCysLeuThrAlaAsnGly : 377 !!.|||||| !:!!:!!!!: !|||:!!|||||| !! !! !||||||||| !||| LysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThrAlaCysGly 28687 : AAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGA : 28746 378 : PhePheProValSerLeuGluThrTyrThrLysIle : 389 |||||| !!:!!||||||||||||!:!||||||:!! PhePheSerIleSerLeuGluThrPheThrLysVal 28747 : TTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 28784 vulgar: AfOr83 317 389 . KQ414828.1 28568 28784 + 201 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28569 28784 201 + . gene_id 8 ; sequence AfOr83 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28569 28784 . + . KQ414828.1 exonerate:protein2genome:local exon 28569 28784 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28569 28784 201 + . alignment_id 8 ; Query AfOr83 ; Align 28569 318 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr83 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 201 Query range: 317 -> 389 Target range: 38544 -> 38760 318 : LeuPheMetPheThrTyrSerCysAsnGlyValIleGluGlnSerAspAsnValAlaVal : 337 |||!::||||||||||||||||||:!! !!:!!! ! !:!!||| |||:!!|||! ! LeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGlu 38545 : CTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAA : 38602 338 : GlyAlaTyrSerAlaLeuTrpThrIleLeuProMetAspLysPheGlyArgMetLeuArg : 357 ..!!.!|||:!!!.!! !|||! !! !|||||||||||||||||||||::::::|||||| SerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArg 38603 : TCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaactgCTAAGA : 38662 358 : AsnAspLeuIleMetValMetLysArgSerArgArgValCysCysLeuThrAlaAsnGly : 377 !!.|||||| !:!!:!!!!: !|||:!!|||||| !! !! !||||||||| !||| LysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThrAlaCysGly 38663 : AAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGA : 38722 378 : PhePheProValSerLeuGluThrTyrThrLysIle : 389 |||||| !!:!!||||||||||||!:!||||||:!! PhePheSerIleSerLeuGluThrPheThrLysVal 38723 : TTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 38760 vulgar: AfOr83 317 389 . KQ414828.1 38544 38760 + 201 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38545 38760 201 + . gene_id 9 ; sequence AfOr83 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38545 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38545 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38545 38760 201 + . alignment_id 9 ; Query AfOr83 ; Align 38545 318 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr83 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 56 -> 152 Target range: 31943 -> 32231 57 : LeuTyrPheThrLeuLeuTyrAsnGlyAspIleLeuTyrAlaMetThrAsnThrIleThr : 76 |||||| ...|||::: ! ! !:!!||| ! !|||!:!|||.!! LeuTyrVal***PheLeuPheLeuGlnValCysMetTyrMetAlaCysAsnSerIleAla 31944 : TTATACGtctaatttctatttcttcagGTTTGCATGTACATGGCATGCAACAGTATAGCC : 32001 77 : ThrIleMetAlaLeuIleLysIleCysIleIleLeuMetTyrLysGlyLysPheLeuAsn : 96 !:!!:!!! !:!!|||||||||! !:!!:!!:!!:!: ||| !|||||||||..! LeuValLeuAspIleIleLysIlePheValLeuValValArgLysLysLysPheLeuGly 32002 : CTGGTTTTGGATATAATCAAGATTTTCGTCCTAGTCGTACGGAAGAAAAAGTTTCTCGGT : 32061 97 : LeuIleValTyrMetGlnGlnAsnPheTrpAsnValThrTyrAspTyrArgGluLysGlu : 116 ||||||! !|||||||||:::||||||:::::::::..!|||||| ! !|||!!.... LeuIleGluTyrMetGlnLysAsnPhePheHisLeuAsnTyrAspGlnAspGluAsnSer 32062 : CTGATTGAGTACATgcagaagaatttctttcatttgaaCTACGATCAGGACGAGAATTCT : 32121 117 : IleLeuAspAspCysArgLysIleCysIlePhePheIleThrSerValThrThrIleGly : 136 |||:!!! !!...!:!::!! ||||||!:!|||:!! ! ! !!:!! ! !..! IleIleAlaHisAlaLysArgThrCysIleTyrPheValCysValPheSerPheCysSer 32122 : ATTATCGCACACGCGAAACGAACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTTCT : 32181 137 : MetCysThrValIleSerTyrLeuThrThrProValIleThrGlnSer : 152 ...! !||||||.!!||||||:!!! !! !||| !!:!! !:!!||| GlnSerThrValPheSerTyrIleIleArgProPheValCysLysSer 32182 : CAATCTACAGTTTTTTCCTATATAATAAGGCCATTTGTATGTAAGTCT : 32231 vulgar: AfOr83 56 152 . KQ414828.1 31943 32231 + 170 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31944 32231 170 + . gene_id 10 ; sequence AfOr83 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 31944 32231 . + . KQ414828.1 exonerate:protein2genome:local exon 31944 32231 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31944 32231 170 + . alignment_id 10 ; Query AfOr83 ; Align 31944 57 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr83 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 147 -> 185 Target range: 17818 -> 17929 148 : ValIleThrGlnSerGlySerAsnGluSerGluArgMetPheProPheAsnIleTrpIle : 167 :!!:!:...... |||...|||||||||||||||!!:.!!|||||||||!!:|||:!! IleLeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpVal 17819 : ATTTTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTC : 17876 168 : AsnLeuProLeuValThrArgThrProTyrTyrGluIleIlePhePheIleGln : 185 |||||||||||| :!!! !|||||||||||||||||| ||| :::||| AsnLeuProLeu---SerMetThrProTyrTyrGluIleThrPheSerLeuGln 17877 : AACTTGCCATTA---TCAATGACGCCATATTACgaaataactttttcattaCAG : 17929 vulgar: AfOr83 147 185 . KQ414828.1 17818 17929 + 117 M 24 72 G 1 0 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17819 17929 117 + . gene_id 11 ; sequence AfOr83 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 17819 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17819 17929 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 17819 17929 117 + . alignment_id 11 ; Query AfOr83 ; Align 17819 148 72 ; Align 17891 173 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr83 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 7 -> 60 Target range: 15121 -> 15280 8 : AspIleSerIleSerLeuSerThrPhePheLeuLysAsnValGlyValTrpMetSerAsp : 27 ||||||||||||||||||!!!:!! !!|||:!!|||! !||||||:!!||||||:!!... AspIleSerIleSerLeuThrSerValPheMetLysIleValGlyLeuTrpMetAlaSer 15122 : GACATATCAATCAGCCTGACGTCCGTTTTCATGAAGATCGTTGGACTGTGGATGGCGTCG : 15179 28 : AsnSerGlyGluGlnArgArgMetLysMetLeuPheValTyrThrIleTrpMetLeuPhe : 47 ||| !! !||||||||| ! !!.!!: !.!. !||||||:!: !:!!.!! AsnArgPheGluGlnArgValArgAsnIleThrLeuCysTyrThrLeuIleAlaIleLeu 15180 : AACCGTTTCGAGCAACGAGTACGAAATATCACGCTGTGTTACACGCTGATCGCGATTCTC : 15239 48 : CysGlyThrIleIleSerThrArgAspLeuTyrPheThr : 60 ! !!.! ! |||..!! !! !|||||||||!:!:!! PheAlaLeuTrpIleGlnMetThrAspLeuTyrTyrSer 15240 : TTCGCCCTGTGGATACAAATGACGGATTTGTATTACTCG : 15280 vulgar: AfOr83 7 60 . KQ414828.1 15121 15280 + 106 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15122 15280 106 + . gene_id 12 ; sequence AfOr83 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 15122 15280 . + . KQ414828.1 exonerate:protein2genome:local exon 15122 15280 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15122 15280 106 + . alignment_id 12 ; Query AfOr83 ; Align 15122 8 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr80 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1211 Query range: 0 -> 407 Target range: 7890 -> 13158 1 : MetGluAlaGluThrGlnLeuAspValSerMetSerLeuSerIlePhePheLeuLysAsn : 20 |||:!!.!!|||! !.!.! !|||:!!|||!!:!:!||||||! !|||||||||:::||| MetGlnThrGluLysAspSerAspIleSerIleAsnLeuSerLysPhePheLeuArgAsn 7891 : ATGCAAACGGAGAAGGATTCGGACATATCGATCAACTTGTCGAAATTCTTCTTGCGCAAT : 7948 21 : ValGlyValTrpIleSerAsnAspProAlaGluLysArgArgMetLysIleLeuValLeu : 40 ||||||:!!|||! :!!.!.:!!! !||||||!!.|||!:!! !||| |||||| ! ValGlyLeuTrpArgAlaGluAsnHisAlaGluAsnArgLysArgLysAlaLeuValAla 7949 : GTCGGCCTGTGGAGGGCTGAGAATCACGCGGAGAATCGTAAAAGGAAAGCGTTGGTCGCC : 8008 41 : IleThrLeuTrpAsnThrMetLeuGlyAlaValValIlePheArgAspIleTyrPheThr : 60 !|||:!!||||||! !.!.|||!.! !|||||| ! ||||||!!:||||||||| TyrThrIleTrpAsnMetPheLeuAlaIleValValGluThrArgAspMetTyrPheThr 8009 : TACACGATTTGGAACATGTTTTTGGCCATAGTGGTTGAAACGAGAGATATGTATTTCACC : 8068 61 : PheMetTyrAsnGly >>>> Target Intron 1 >>>> AspIleLeuTyrValI : 71 !::.!.|||!!.||| 796 bp |||||||||||||||! TrpPheTyrLysGly++ ++AspIleLeuTyrValS 8069 : TGGTTCTATAAAGGCgt.........................agGATATTCTTTACGTTA : 8897 72 : leThrAsnPheLeuThrValMetIleSerPheValLysIleIleIleIleMetIleTyrL : 91 !||||||!!.|||!:!|||!!::!!!!! :!!|||:!!! !:!!:!!:!:|||:!!| erThrAsnLeuLeuSerValIleLeuThrThrIleLysLeuThrValValLeuIleHisL 8898 : GTACCAACTTACTGAGCGTGATCTTAACTACGATCAAGCTAACTGTCGTACTAATACACA : 8957 92 : ysLysGluPheIleAspMetIleLeuTyrMetGluLysAsnPheTrpAsnValLysTyrA : 111 || !||||||!!:..!:!!||| !|||||| ! :!!:!!|||||||||||| ! |||| ysValGluPheMetSerLeuIleAspTyrMetTyrGluHisPheTrpAsnValAspTyrA 8958 : AAGTGGAATTCATGAGTCTGATTGATTACATGTACGAACATTTCTGGAACGTGGATTACG : 9017 112 : spPheGlnGluGluGluIleLeuAsnAsnCysArgLysThrCysIlePhePheValThrS : 131 ||.!!!!.|||:!!..!|||:!::::||||||:::||||||||||||.!!|||..!:!!| spLeuHisGluLysArgIleMetAspAsnCysLysLysThrCysIleIlePheThrSerS 9018 : ATCTTCACGAGAAAAGAATTATggataattgtaaaaaaactTGCATCATCTTCACTTCAA : 9077 132 : erValSerThrIleGlyIleCysAlaMetIleSerTyrAlaIleThrProIleIle{G} : 150 |||||!!!||||||||||||||||||!!:||||||||| ! ||||||.!!|||{ } erValThrThrIleGlyIleCysAlaIleIleSerTyrIleAlaThrProPheIle{M}+ 9078 : GCGTCACTACCATTGGCATATGCGCTATAATATCTTACATAGCGACACCGTTTATC{A}g : 9135 151 : >>>> Target Intron 2 >>>> {lu}TyrTyrThrGluAsnLeuSerGluArgI : 160 192 bp { !}:!! ! !...||| !||||||||| + ++{et}HisSerGlnSerAsnLysSerGluArgA 9136 : t.........................ag{TG}CACAGTCAAAGCAACAAATCTGAAAGAG : 9356 161 : leLeuProPheHisValTrpLeuAsnLeuProIleIleSerValThrProTyrTyrGluI : 180 !!!! !||| !!:!!||||||||||||||| :!:!!!|||:!!|||||||||||| laPheLeuPheAspMetTrpLeuAsnLeuPro---LeuThrValSerProTyrTyrGluG 9357 : CGTTTCTGTTCGACATGTGGCTCAATTTACCT---CTGACTGTTTCGCCTTACTACGAAG : 9413 181 : leLeuPheAlaAlaGlu >>>> Target Intron 3 >>>> ValLeuSerIleTy : 190 !:!!!!.|||!.!:!! 1401 bp :!!! !.!!:!:|| lyMetLeuAlaValGln++ ++IleSerGlyLeuTy 9414 : GAATGTTGGCTGTACAGgt.........................agATTTCAGGACTGTA : 10844 191 : rCysValAlaLeuCysTyrPheCysPheAspAsnValPheCysIleLeuAlaValHisLe : 210 |! !..!!.!:!!|||||||||||||||||||||:!!|||||||||:!!::!|||||||| rPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerValHisLe 10845 : TTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTGCATTT : 10904 211 : uAlaGlyGlnPheAsnIleLeuLysHisLysPheAlaLysLeuCysAspThrAspSerLy : 230 |::!|||||||||..!||||||:!!:!!!:!!!..!!||||||! !|||..!.!.! !:! uSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGlnTyrGl 10905 : GAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAATATCA : 10964 231 : sIleSerLysLysAspGluGluSerArgLeuAlaIleGluHisValGlnValLeuTyrGl : 250 !||||||:::|||::: |||||| !|||! ! !!: !..!!:: !! !||||| nIleSerGluLysAsnMetGluSerValLeuGlu---AspCysThrArgArgSerTyrGl 10965 : GATAAgcgagaaaaatatggaatcTGTATTGGAA---GACTGTACACGTAGATCTTACGA : 11021 251 : uArgPheLysGluTyrValArgArgHisGlnSerLeuIleAsnTyrCysGluArgLeuGl : 270 |!:!||||||...|||||||||!:!||||||!!!||||||:!!|||! !|||!:!||||| uLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLysLeuGl 11022 : GAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAGCTTGA : 11081 271 : uAsnValTyrThrValIleIleLeuGlyGlnValValIleSerSerValLeuIleCysLe : 290 |:!!||||||||| !||||||||||||||||||:!!:!:! !||||||||||||||||| uHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIleCysLe 11082 : ACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATTTGCCT : 11141 291 : uPheGlyTyrGlnIleLeuVal >>>> Target Intron 4 >>>> AsnAspVal : 300 |||||||||||||||||||:!! 1305 bp !:!!..! uPheGlyTyrGlnIleLeuLeu++ ++AlaAsnThr 11142 : CTTTGGTTATCAGATATTATTGgt.........................agGCTAATACT : 12476 301 : SerIleGlyArgArgSerIlePheValPheLeuLeuLeuGlySerMetCysLeuLeuPhe : 320 |||:!!!.!|||||||||||||||:!!||||||:!!! !|||:!!||| !||||||||| SerLeuAlaArgArgSerIlePheMetPheLeuIleCysGlyAlaMetValLeuLeuPhe 12477 : TCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTTTTATTGTTT : 12536 321 : MetPheThrTyrSerCysAsnSerValIleValHisSerGluAsnIleAlaThrGlyAla : 340 |||||||||||||||||||||! !||||||! !!!.|||!!:||||||||| !!.!||| MetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAlaPheAlaAla 12537 : ATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCTTTTGCGGCG : 12596 341 : TyrSerAlaLeuTrpThrThrMetProMetAsnLysPheGlyArgMetLeuArgAsnAsp : 360 |||||||||||||||||| !||||||||||||||| !|||!:!! !||||||:!!||| TyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeuArgHisAsp 12597 : TATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTACGGCATGAT : 12656 361 : LeuIleLeuValIleGluArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePhe : 380 ||||||:!!||||||! !|||||||||||||||||||||||||||||||||||||||||| LeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePhe 12657 : TTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATGGATTTTTC : 12716 381 : ProValSerLeuGluThrTyrThrThr >>>> Target Intron 5 >>>> IleL : 391 ||||||||||||||||||||||||||| 359 bp |||| ProValSerLeuGluThrTyrThrThr++ ++IleL 12717 : CCTGTGTCCTTAGAAACTTATACTACGgt.........................agattt : 13108 392 : euSerThrAlaValSerTyrPheThrLeuLeuArgAsnAsnLeuGluGlu : 407 |||||||||||!.!|||||||||||||||||||||||||||:!!|||!!: euSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnValGluAsp 13109 : tgAGTACCGCGGCGTCGTACTTCACATTATTGAGAAATAACGTAGAAGAT : 13158 vulgar: AfOr80 0 407 . KQ414828.1 7890 13158 + 1211 M 65 195 5 0 2 I 0 792 3 0 2 M 84 252 S 0 1 5 0 2 I 0 188 3 0 2 S 1 2 M 20 60 G 1 0 M 14 42 5 0 2 I 0 1397 3 0 2 M 56 168 G 1 0 M 55 165 5 0 2 I 0 1301 3 0 2 M 92 276 5 0 2 I 0 355 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 7891 13158 1211 + . gene_id 1 ; sequence AfOr80 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 7891 8085 . + . KQ414828.1 exonerate:protein2genome:local exon 7891 8085 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 8086 8087 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 8086 8881 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 8880 8881 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 8882 9134 . + . KQ414828.1 exonerate:protein2genome:local exon 8882 9134 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 9135 9136 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 9135 9326 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 9325 9326 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 9327 9430 . + . KQ414828.1 exonerate:protein2genome:local exon 9327 9430 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 9431 9432 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 9431 10831 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 10830 10831 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 10832 11164 . + . KQ414828.1 exonerate:protein2genome:local exon 10832 11164 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 11165 11166 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 11165 12469 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 12468 12469 . + . intron_id 3 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 12470 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12745 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13104 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 13103 13104 . + . intron_id 4 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 13105 13158 . + . KQ414828.1 exonerate:protein2genome:local exon 13105 13158 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 7891 13158 1211 + . alignment_id 1 ; Query AfOr80 ; Align 7891 1 195 ; Align 8882 66 252 ; Align 9329 151 60 ; Align 9389 172 42 ; Align 10832 186 168 ; Align 11000 243 165 ; Align 12470 298 276 ; Align 13105 390 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr80 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 700 Query range: 49 -> 407 Target range: 21843 -> 24193 50 : AlaValValIlePheArgAspIleTyrPheThrPheMetTyrAsnGlyAspIleLeuTyr : 69 ||| !|||:!! ..!.!.||| ...:::::: ! !:!!||| AlaTyrValLeuLysGluGlnIleIleArgIleIleLeuPhePheGlnValCysMetTyr 21844 : GCATATGTTCTTAAAGAGCAAATTATAcgtataattttgttttttcaggTTTGCATGTAC : 21901 70 : ValIleThrAsnPheLeuThrValMetIleSerPheValLysIleIleIleIleMetIle : 89 :!! ! !||| !|||.!!:!!:!::!:..!.!.:!!||||||.!!:!!:!!:!::!! MetAlaCysAsnSerLeuAlaLeuValLeuAspIleIleLysIlePheValLeuLeuVal 21902 : ATGGCATGCAACAGTTTAGCCCTGGTTTTGGATATAATCAAGATTTTCGTCCTACTCGTA : 21961 90 : TyrLysLysGluPheIleAspMetIleLeuTyrMetGluLysAsnPheTrpAsnValLys : 109 ||||||:!!|||:!!! !:!!||| !||||||:!!||||||||||||:!!:!!!!. ArgLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheTrpHisLeuAsn 21962 : CGGAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTTTGGCATTTGAAC : 22021 110 : TyrAspPheGlnGluGluGluIleLeuAsnAsnCysArgLysThrCysIlePhePheVal : 129 |||||| .!.|||.!....|||:!! :!!...!:!::!|||||||||!:!|||||| TyrAspGlnAspGluAsnSerIleIleAlaHisAlaLysArgThrCysIleTyrPheVal 22022 : TACGACCAGGACGAGAATTCTATTATCGCACACGCGAAACGAACGTGCATCTACTTCGTC : 22081 130 : ThrSerValSerThrIleGlyIleCysAlaMetIleSerTyrAlaIleThrProIleIle : 149 ! ! !!||| ! !..! !! !.!!:!:.!!|||||| !|||! !|||.!!:!! CysValPheSerPheCysSerGlnSerThrValPheSerTyrIleIleArgProPheVal 22082 : TGCGTCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTATATAATAAGGCCATTTGTA : 22141 150 : {G} >>>> Target Intron 1 >>>> {lu}TyrTyrThrGluAsnLeuSerGlu : 158 {.} 170 bp {.!} !! ! !:!!||| !|||!!: {S}++ ++{er}AsnLeuGlyLysAsnGluSerAsp 22142 : {T}gt.........................ag{ca}AATCTTGGAAAGAATGAATCTGAT : 22338 159 : ArgIleLeuProPheHisValTrpLeuAsnLeuProIleIleSerValThrProTyrTyr : 178 ||| !! ! !!:! !!:!!||||||:!!|||||| :!!|||||||||||||||||| ArgGluHisIleTyrAspMetTrpLeuAspLeuPro---LeuSerValThrProTyrTyr 22339 : AGAGAACATATATACGATATGTGGCTCGATCTACCA---TTATCCGTAACAccatattat : 22395 179 : GluIleLeuPheAlaAlaGlu >>>> Target Intron 2 >>>> ValLeuSerI : 189 |||||| ::! ! !:!! 307 bp !.!||||||: GluIleThrTyrIleIleGln++ ++AlaLeuSerV 22396 : gaaattacttACATAATACAGgt.........................agGCTTTATCTG : 22735 190 : leTyrCysValAlaLeuCysTyrPheCysPheAspAsnValPheCysIleLeuAlaValH : 209 !:||| |||::! !||||||.!!||||||||| :::||| ||||||...:!!| alTyrGlnValSerAlaCysTyrLeuCysPheAspIleIlePhePheIleLeuCysLeuH 22736 : TGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatttttttcattttgtgtCTAC : 22795 210 : isLeuAlaGlyGlnPheAsnIleLeuLysHisLysPheAlaLysLeuCysAspThrAspS : 229 ||:!!||||||||||||..!||||||:!!:!!!:!.!!|||!!.:!!! ! ! ! | isValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeu---S 22796 : ACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTA---A : 22852 230 : erLysIleSerLysLysAspGluGluSerArgLeuAlaIleGluHisValGlnValLeuT : 249 ||:!!||| !|||!....!|||.!. !!!!! !! ! ! !:!! !:!! !! !| erGluIleValLysSerSerGluAsnProSerThrAspGluLeuTyrSerGluLysCysT 22853 : GCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAATTATACTCAGAGAAATGTT : 22912 250 : yrGluArgPheLysGluTyrValArgArgHisGlnSerLeuIleAsnTyrCysGluArgL : 269 || !:!||||||.!.! !:!!!:!!:!||||||:!!||||||.!.!:!|||! !! !| yrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrL 22913 : ACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACAC : 22972 270 : euGluAsnValTyrThrValIleIleLeuGlyGlnValValIleSerSerValLeuIleC : 289 |||||.!.|||!:!|||||||||:!!||||||||||||:!!!!:||||||:!!||||||| euGluGluValPheThrValIleValLeuGlyGlnValLeuMetSerSerIleLeuIleC 22973 : TCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCTAATGTCTAGCATATTAATTT : 23032 290 : ysLeuPheGlyTyrGlnIleLeuVal >>>> Target Intron 3 >>>> AsnAs : 299 ||!!!.!!|||||||||:!!|||:!! 492 bp ! ! ysPheIleGlyTyrGlnValLeuLeu++ ++IleLy 23033 : GCTTCATCGGGTATCAAGTACTCCTGgt.........................agATAAA : 23554 300 : pValSerIleGlyArgArgSerIlePheValPheLeuLeuLeuGlySerMetCysLeuLe : 319 :!!|||.!!! ! !||| ! !|||!.!! !!!!|||:!! !.!!||| !!! !|| sLeuSerPheGluSerArgValAlaPheAlaCysPheLeuMetMetGlyMetSerGlnLe 23555 : GTTATCATTTGAATCGCGCGTTGCTTTCGCGTGCTTCTTGATGATGGGCATGAGTCAACT : 23614 320 : uPheMetPheThrTyrSerCysAsnSerValIleValHisSerGluAsnIleAlaThrGl : 339 |!::||||||||||||||||||:!!!!!:!!! !..!.!.||| !||||||||| !.. uTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSe 23615 : ATGGATGTTCACGTATAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATC : 23674 340 : yAlaTyrSerAlaLeuTrpThrThrMetProMetAsnLysPheGlyArgMetLeuArgAs : 359 !!.!|||:!!!.!! !|||! !!.!:!:||||||:!!|||||||||!:!:!!||||||!! rValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLy 23675 : TGTGTACGCTGGACCATGGATAAATTTACCAATGGACAAATTTGGAAAACTGCTAAGAAA : 23734 360 : nAspLeuIleLeuValIleGluArgSerArgArgValCysCysLeuThrAlaAsnGlyPh : 379 .!!:||| !:!!:!!||| !|||:!!|||||| !! !..!||||||||| !||||| sGluLeuGlnMetLeuIleLeuArgAlaArgArgProSerAlaLeuThrAlaCysGlyPh 23735 : AGAATTGCAAATGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATT : 23794 380 : ePheProValSerLeuGluThrTyrThrThr >>>> Target Intron 4 >>>> : 390 |||| !!:!!||||||||||||!:!|||! ! 313 bp ePheSerIleSerLeuGluThrPheThrLys++ ++ 23795 : CTTTTCTATATCTCTCGAAACCTTTACTAAGgt.........................ag : 24138 391 : IleLeuSerThrAlaValSerTyrPheThrLeuLeuArgAsnAsnLeuGluGlu : 407 |||:!!||||||:!!:!!||||||||||||||||||!:!.!. !:!!|||!!: IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnCysIleGluAsp 24139 : ATCATGAGTACATCAATGTCGTATTTCACATTATTAAAACAATGTATCGAGGAC : 24193 vulgar: AfOr80 49 407 . KQ414828.1 21843 24193 + 700 M 100 300 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 20 60 G 1 0 M 14 42 5 0 2 I 0 303 3 0 2 M 42 126 G 1 0 M 69 207 5 0 2 I 0 488 3 0 2 M 92 276 5 0 2 I 0 309 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21844 24193 700 + . gene_id 2 ; sequence AfOr80 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 21844 22144 . + . KQ414828.1 exonerate:protein2genome:local exon 21844 22144 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22145 22146 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22145 22314 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22313 22314 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 22315 22418 . + . KQ414828.1 exonerate:protein2genome:local exon 22315 22418 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 22419 22420 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22419 22725 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 23058 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 23059 23060 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23059 23550 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 23549 23550 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 23551 23826 . + . KQ414828.1 exonerate:protein2genome:local exon 23551 23826 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23827 23828 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23827 24139 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 24138 24139 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 24140 24193 . + . KQ414828.1 exonerate:protein2genome:local exon 24140 24193 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21844 24193 700 + . alignment_id 2 ; Query AfOr80 ; Align 21844 50 300 ; Align 22317 151 60 ; Align 22377 172 42 ; Align 22726 186 126 ; Align 22852 229 207 ; Align 23551 298 276 ; Align 24140 390 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr80 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 586 Query range: 56 -> 407 Target range: 37008 -> 39217 57 : IleTyrPheThrPheMetTyrAsnGlyAspIleLeuTyrValIleThrAsnPheLeuThr : 76 :::||| |||:::::: !! ! !:!!|||:!! ! !||| !|||.!! LeuTyrVal***PheLeuPheLeuGlnValCysMetTyrMetAlaGlyAsnGlyLeuAla 37009 : ttatacgtctaatttctatttctacaGGTTTGCATGTACATGGCAGGCAACGGTTTAGCC : 37066 77 : ValMetIleSerPheValLysIleIleIleIleMetIleTyrLysLysGluPheIleAsp : 96 :!!:!::!:..!.!.:!!||||||.!! !:!!:!::!!:!!||||||:!!|||:!!! ! MetValLeuAspIleIleLysIlePheSerLeuValValHisLysLysLysPheLeuGly 37067 : ATGGTTTTGGATATAATCAAGATTTTCTCCCTAGTCGTACACAAGAAAAAGTTTCTCGGT : 37126 97 : MetIleLeuTyrMetGluLysAsnPheTrpAsnValLysTyrAspPheGlnGluGluGlu : 116 :!!||| !||||||:!!|||||||||! !:!!:!!!!.|||||| ! |||.!.... LeuIleGluTyrMetGlnLysAsnPheLeuHisLeuAsnTyrAspGlnTyrGluAsnSer 37127 : CTGATTGAGTACATGCAGAAGAATTTCTTGCATTTGAACTACGATCAGTACGAGAATTCT : 37186 117 : IleLeuAsnAsnCysArgLysThrCysIlePhePheValThrSerValSerThrIleGly : 136 :!!:!! .!....!:!::!! !||||||!:!|||||| :::||| ...... ValIleAlaGlnAlaLysArgMetCysIleTyrPheValCysValLeuSerPhePheSer 37187 : GTTATCGCACAGGCGAAACGAATGTGCATTTACTTCGTGTGcgttttgtcatttttttct : 37246 137 : IleCysAlaMetIleSerTyrAlaIleThrProIleIle{G} >>>> Target Intr : 150 :!!:!::!!|||||| !:!!! !|||:!!:!!{.} 169 bp GlnSerSerValLeuSerTyrIleValArgProLeuVal{S}++ 37247 : caatctTCAGTTCTTTCCTATATAGTAAGGCCACTTGTA{T}gt................ : 37291 151 : on 1 >>>> {lu}TyrTyrThrGluAsnLeuSerGluArgIleLeuProPheHisVal : 165 {.!} !! ! !:!!||| !|||!!:||| !! ! !!:! !!:!! ++{er}AsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMet 37292 : .........ag{ca}AATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATG : 37502 166 : TrpLeuAsnLeuProIleIleSerValThrProTyrTyrGluIleLeuPheAlaAlaGlu : 185 ||||||:!!|||||| :!!|||:!!|||||||||||||||||| ::! ! !:!! TrpLeuAspLeuPro---LeuSerIleThrProTyrTyrGluIleThrTyrIleIleGln 37503 : TGGCTCGATCTACCA---TTATCCATAACAccatattatgaaattacttACATAATACAG : 37559 186 : >>>> Target Intron 2 >>>> ValLeuSerIleTyrCysValAlaLeuCysT : 196 307 bp !.!||||||:!:||| |||::! !|||| ++ ++AlaLeuSerValTyrGlnValSerAlaCysT 37560 : gt.........................agGCTTTATCTGTGTACCAAGTTAGCGCGTGTT : 37899 197 : yrPheCysPheAspAsnValPheCysIleLeuAlaValHisLeuAlaGlyGlnPheAsnI : 216 ||.!!||||||||| :::||| ||||||...:!!|||:!!||||||||||||..!| yrLeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgI 37900 : ACCTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTA : 37959 217 : leLeuLysHisLysPheAlaLysLeuCysAspThrAspSerLysIleSerLysLysAspG : 236 |||||:!!:!!!:!.!!|||!!.:!!! ! ! ! |||:!!||| !|||!....!| leLeuGlnTyrArgIleAlaAsnValSerGlyLeu---SerGluIleValLysSerSerG 37960 : TACTACAATACAGAATTGCCAATGTGTCAGGTCTA---AGCGAGATAGTGAAAAGCAGTG : 38016 237 : luGluSerArgLeuAlaIleGluHisValGlnValLeuTyrGluArgPheLysGluTyrV : 256 ||.!. !!!!! !! ! ! !:!! !:!! !! !||| !:!||||||.!.! !: luAsnProSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysI 38017 : AAAATCCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCA : 38076 257 : alArgArgHisGlnSerLeuIleAsnTyrCysGluArgLeuGluAsnValTyrThrValI : 276 !!!:!!:!||||||:!!||||||.!.!:!|||! !! !||||||.!.|||!:!||||||| leGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValI 38077 : TTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAA : 38136 277 : leIleLeuGlyGlnValValIleSerSerValLeuIleCysLeuPheGlyTyrGlnIleL : 296 || !||||||||||||:!!!!:! !|||:!!|||||||||!!! !!! !|||||| !| leAlaLeuGlyGlnValLeuMetPheSerIleLeuIleCysPheValValTyrGlnAlaL 38137 : TTGCACTCGGACAAGTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCAC : 38196 297 : euVal >>>> Target Intron 3 >>>> AsnAspValSerIleGlyArgArgSe : 306 ||:!! 289 bp ||| ::: !! !.!! euLeu++ ++AsnPheTyrTyrLeuTrp---Asn** 38197 : TCCTGgt.........................agaatttttattacctgTGG---AATTA : 38512 307 : rIlePheValPheLeuLeuLeuGlySerMetCysLeuLeuPheMetPheThrTyrSerCy : 326 !!!:|||!.! :!! ! !! !|||... ! !:!!|||! !!:!!:!! !..!|| *MetPheAlaThrMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCy 38513 : AATGTTCGCAACGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTG : 38572 327 : sAsnSerValIleValHisSerGluAsnIleAlaThrGlyAlaTyrSerAlaLeuTrpTh : 346 | :!!! !..!.!.||| !||||||||| !..!!.!|||:!!!.!! !|||! s------IleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIl 38573 : C------ATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGAT : 38626 347 : rThrMetProMetAsnLysPheGlyArgMetLeuArgAsnAspLeuIleLeuValIleGl : 366 !!.!:!:||||||:::|||||||||::::::||||||!!.|||||| !:!!:!!||| eAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLe 38627 : AAATTTACCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTT : 38686 367 : uArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePheProValSerLeuGluTh : 386 !|||:!!|||||| !! !! !||||||||| !||||||||| !!:!!||||||||||| uArgAlaArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluTh 38687 : GAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAAC : 38746 387 : rTyrThrThr >>>> Target Intron 4 >>>> IleLeuSerThrAlaValSer : 396 |!:!|||! ! 406 bp |||:!!||||||:!!:!!||| rPheThrLys++ ++IleMetSerThrSerMetSer 38747 : CTTTACTAAGgt.........................agATCATGAGTACATCAATGTCG : 39182 397 : TyrPheThrLeuLeuArgAsnAsnLeuGluGlu : 407 |||||||||||||||!:!.!.!:!:!!!!:!!: TyrPheThrLeuLeuLysGlnSerIleAspAsp 39183 : TATTTCACATTATTAAAACAAAGTATCGACGAC : 39217 vulgar: AfOr80 56 407 . KQ414828.1 37008 39217 + 586 M 93 279 S 0 1 5 0 2 I 0 165 3 0 2 S 1 2 M 20 60 G 1 0 M 14 42 5 0 2 I 0 303 3 0 2 M 42 126 G 1 0 M 69 207 5 0 2 I 0 285 3 0 2 M 6 18 G 1 0 M 22 66 G 2 0 M 61 183 5 0 2 I 0 402 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37009 39217 586 + . gene_id 3 ; sequence AfOr80 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37009 37288 . + . KQ414828.1 exonerate:protein2genome:local exon 37009 37288 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37289 37290 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37289 37457 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37456 37457 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 37458 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37458 37561 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 38201 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 38201 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 38202 38203 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 38202 38490 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 38489 38490 . + . intron_id 2 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 38491 38757 . + . KQ414828.1 exonerate:protein2genome:local exon 38491 38757 . + . insertions 0 ; deletions 3 KQ414828.1 exonerate:protein2genome:local splice5 38758 38759 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 38758 39163 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 39162 39163 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 39164 39217 . + . KQ414828.1 exonerate:protein2genome:local exon 39164 39217 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37009 39217 586 + . alignment_id 3 ; Query AfOr80 ; Align 37009 57 279 ; Align 37460 151 60 ; Align 37520 172 42 ; Align 37869 186 126 ; Align 37995 229 207 ; Align 38491 298 18 ; Align 38509 305 66 ; Align 38575 329 183 ; Align 39164 390 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr80 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 489 Query range: 183 -> 407 Target range: 32798 -> 34313 184 : AlaGluValLeuSerIleTyrCysValAlaLeuCysTyrPheCysPheAspAsnValPhe : 203 .!!:!!!.!||||||:!:||| |||!.!:!!||||||.!!||||||||||||:::||| ThrGlnAlaLeuSerValTyrGlnValGlyValCysTyrLeuCysPheAspAsnIlePhe 32799 : ACGCAGGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCTttgataacattttt : 32856 204 : CysIleLeuAlaValHisLeuAlaGlyGlnPheAsnIleLeuLysHisLysPheAlaLys : 223 |||:::..!:!!|||:!!||||||||||||..!||||||:!!:!!!:!.!!|||!!. PheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsn 32857 : ttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAAT : 32916 224 : LeuCysAspThrAspSerLysIleSerLysLysAspGluGluSerArgLeuAlaIleGlu : 243 :!!! ! ! ! |||:!!||| !|||!..:!!!!:.!.!!!!!! !||| ! ! ValSerGlyLeu---SerGluIleValLysSerAsnAspAsnThrSerThrAlaGluLeu 32917 : GTGTCAGGTCTA---AGCGAGATAGTGAAGAGCAATGATAATACAAGCACGGCTGAATTA : 32973 244 : HisValGlnValLeuTyrGluArgPheLysGluTyrValArgArgHisGlnSerLeuIle : 263 :!! !:!! !! !||| !:!||||||.!.! !:!!!:!!:!||||||:!!|||||| TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 32974 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTaatt : 33033 264 : AsnTyrCysGluArgLeuGluAsnValTyrThrValIleIleLeuGlyGlnValValIle : 283 ...:::|||||| ||||||.!.|||!:!|||||||||:!!||||||||||||:!!!!: GluPheCysGluIleLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMet 33034 : gaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTAATG : 33093 284 : SerSerValLeuIleCysLeuPheGlyTyrGlnIleLeuVal >>>> Target Intr : 298 ! !|||:!!:!!||||||!!! !||||||:!!:!!|||:!! 406 bp PheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeu++ 33094 : TTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGgt................ : 33140 299 : on 1 >>>> AsnAspValSerIleGlyArgArgSerIlePheValPheLeuLeuLeuG : 314 ! :!! !!.!!! ! !||| ! !|||..!! !!!!|||:!! ++IleThrLeuProPheGluSerArgValAlaPheThrCysPheLeuIleT 33141 : .........agATAACGTTACCATTTGAATCGCGCGTTGCTTTCACGTGCTTCTTGATTA : 33592 315 : lySerMetCysLeuLeuPheMetPheThrTyrSerCysAsnSerValIleValHisSerG : 334 !.!!:!! !!! !|||!::|||||||||||||||||||||!!!:!!! !..!.!.||| hrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAsnCysIleThrThrGluSerL 33593 : CGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCAATTGCATAACAACAGAAAGCC : 33652 335 : luAsnIleAlaThrGlyAlaTyrSerAlaLeuTrpThrThrMetProMetAsnLysPheG : 354 !||||||||| !..!!.!|||:!!!.!! !|||! !!.!:!:||||||:::||||||| euAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheG 33653 : TGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATggataaatttg : 33712 355 : lyArgMetLeuArgAsnAspLeuIleLeuValIleGluArgSerArgArgValCysCysL : 374 ||::::::||||||!!.|||||| !:!!:!!||| !|||:!!|||||| !! !..!| lyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerAlaL 33713 : gaaaactgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCGCTT : 33772 375 : euThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrThr >>>> Target : 390 |||||||| !||||||||| !!:!!!!!|||||||||!:!|||! ! 4 euThrAlaCysGlyPhePheSerIleThrLeuGluThrPheThrLys++ 33773 : TGACTGCCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTACTAAGgt........... : 33822 391 : Intron 2 >>>> IleLeuSerThrAlaValSerTyrPheThrLeuLeuArgAsnAs : 404 40 bp |||:!!||||||:!!:!!||||||||||||||||||!:!.!.!: ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnSe 33823 : ..............agATCATGAGTACATCAATGTCGTATTTCACCCTACTAAAACAAAG : 34302 405 : nLeuGluGlu : 407 ! !|||!!: rAlaGluAsp 34303 : TGCCGAGGAC : 34313 vulgar: AfOr80 183 407 . KQ414828.1 32798 34313 + 489 M 44 132 G 1 0 M 69 207 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32799 34313 489 + . gene_id 4 ; sequence AfOr80 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32799 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32799 33137 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 2 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34313 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34313 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32799 34313 489 + . alignment_id 4 ; Query AfOr80 ; Align 32799 184 132 ; Align 32931 229 207 ; Align 33544 298 276 ; Align 34260 390 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr80 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 389 Query range: 147 -> 393 Target range: 17818 -> 19644 148 : IleIleGluTyrTyrThrGluAsnLeuSerGluArgIleLeuProPheHisValTrpLeu : 167 |||:!: :::||| |||||||||||||||||||||:!!:!!|||:!! IleLeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpVal 17819 : ATTTTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTC : 17876 168 : AsnLeuProIleIleSerValThrProTyr >>>> Target Intron 1 >>>> T : 178 |||||||||:!! !! !..! !! !||| 107 bp AsnLeuProLeuSerMetThrProTyrTyr+- ++I 17877 : AACTTGCCATTATCAATGACGCCATATTACga.........................aga : 18016 179 : yrGluIleLeuPheAlaAlaGluValLeuSerIleTyrCysValAlaLeuCysTyrPheC : 198 ...|||||| |||||||||:!:||| !:!!!.!:!! !!||||||| leArgIleLeuLysIlePhe***ValLeuSerLeuTyrHisIleGlyValSerTyrPheC 18017 : ttcgaattttgaaaattttttaggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCT : 18076 199 : ysPheAspAsnValPheCysIleLeuAlaValHisLeuAlaGlyGlnPheAsnIleLeuL : 218 ||||||||||| ...||||||:!! !:!!||| !||| !||||||...:!!|||: ysPheAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuG 18077 : gcttcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGC : 18136 219 : ysHisLysPheAlaLysLeuCysAspThrAspSerLysIleSerLysLysAsp<-><->G : 236 !!:!!::!.!.|||!!.:!! !||| ! ! ...||| |||::: : lnTyrArgMetAlaAsnMetThrAspLeuLysAspLysGluArgLysGluArgAsnMetL 18137 : AATACCGAATGGCGAATATGACCGATTTAAAGGacaaagagaggaaagagagaaatatga : 18196 237 : luGluSerArgLeuAlaIleGluHisValGlnValLeuTyrGluArgPheLysGluTyrV : 256 !! !||| ! !:!! !!.! !! !! !|||.!. !.!!|||!!:|||: ysThrSerValSerSerAlaCysPheAlaThrGluCysTyrAsnValLeuLysAspTyrI 18197 : AGACAAGTGTGAGTTCGGCGTGCTTTGCAACAGAATGTTACAACGTTCTCAAAGATTATA : 18256 257 : alArgArgHisGlnSerLeuIleAsnTyrCysGluArgLeuGluAsn >>>> Target : 272 !!|||!:!||||||!:!|||||| !||||||.!.!:!||||||!!. 9 leArgGlnHisGlnAsnLeuIleAlaTyrCysAsnLysLeuGluLys++ 18257 : TCAGACAGCATCAGAACCTGATTGCTTATTGCAACAAACTCGAGAAAgt........... : 18306 273 : Intron 2 >>>> ValTyrThrValIleIleLeuGlyGlnValValIleSerSerVa : 286 75 bp :!! !||| ! !:!!:!! !...:!!:!! !..!!!! -+LeuLeuThrProTyrLeuIlePheSerIleIle***GlnCysAr 18307 : ..............tgTTACTTACACCCTACCTAATATTTAGTATTATCTGACAGTGTCG : 19321 287 : lLeuIleCysLeuPheGlyTyrGlnIleLeuValAsnAspValSerIleGlyArgArgSe : 306 !! !! !! :!! !! !||| ! :!!||| ! :!!..! !!! ! !!! !||| g***Asn***MetThrValTyrTyrValLeuGlnAlaAsnThrProThrArgThrArgLe 19322 : TTAAAACTAAATGACTGTATATTACGTTTTACAGGCAAATACACCTACCAGAACCCGACT : 19381 307 : rIlePheValPheLeuLeuLeuGlySerMetCysLeuLeuPheMetPheThrTyrSerCy : 326 !||||||:!!|||! !:!! !!.!!!!||||||! !|||.!.||||||||||||||||| uIlePheIlePheHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSerCy 19382 : GATTTTCATCTTTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGCTG : 19441 327 : sAsnSerValIleValHisSerGluAsnIleAlaThrGlyAlaTyrSerAlaLeuTrpTh : 346 |:!!!!!:!!||| !.!.||| !!:!! !||| !!.!!.!||||||!.!! !||||| sAspCysIleIleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyProTrpTh 19442 : CGACTGCATCATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGAC : 19501 347 : rThrMetProMetAsnLysPheGlyArgMetLeuArgAsnAspLeuIleLeuValIleGl : 366 | !:!:||||||!:! ! !|||!:!|||:!!|||!!.||||||!!:||||||||| rLeuLeuProMetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuValIleMe 19502 : ACTTTTACCAATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCAT : 19561 367 : uArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePheProValSerLeuGluTh : 386 !||||||!!! ! !|||||||||||||||!..||||||||| !|||||||||||||| tArgSerSerValProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGluTh 19562 : GAGATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAAC : 19621 387 : rTyrThrThrIleLeuSerThr : 393 ||||||| !:!!:!! !||| rTyrThrGlyValIleValThr 19622 : GTACACAGGGGTAATCGTCACC : 19644 vulgar: AfOr80 147 393 . KQ414828.1 17818 19644 + 389 M 30 90 5 0 2 I 0 103 3 0 2 M 58 174 G 0 6 M 36 108 5 0 2 I 0 971 3 0 2 M 122 366 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17819 19644 389 + . gene_id 5 ; sequence AfOr80 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17819 17908 . + . KQ414828.1 exonerate:protein2genome:local exon 17819 17908 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17909 17910 . + . intron_id 1 ; splice_site "ga" KQ414828.1 exonerate:protein2genome:local intron 17909 18015 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18014 18015 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18016 18303 . + . KQ414828.1 exonerate:protein2genome:local exon 18016 18303 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18304 18305 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18304 19278 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 19277 19278 . + . intron_id 1 ; splice_site "TG" KQ414828.1 exonerate:protein2genome:local cds 19279 19644 . + . KQ414828.1 exonerate:protein2genome:local exon 19279 19644 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17819 19644 389 + . alignment_id 5 ; Query AfOr80 ; Align 17819 148 90 ; Align 18016 178 174 ; Align 18196 236 108 ; Align 19279 272 366 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr80 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 313 Query range: 297 -> 407 Target range: 4171 -> 6471 298 : AsnAspValSerIleGlyArgArgSerIlePheValPheLeuLeuLeuGlySerMetCysLe : 318 .!.|||..! !!||| !!:!||| !! !|||:!!|||! !||| !|||!!!:!!|||! GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGl 4172 : GAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCA : 4232 319 : uLeuPheMetPheThrTyrSerCysAsnSerValIleValHisSerGluAsnIleAlaThrG : 339 !|||!!.||||||||||||||||||:!!!!!:!!||| !.!.||| !|||:!:|||!.!! nLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnA 4233 : ACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATG : 4295 340 : lyAlaTyrSerAlaLeuTrpThrThrMetProMetAsnLysPheGlyArgMetLeuArgAsn : 359 .! !|||..!..!! !|||! ! !:!!||||||:!!!:!! !|||||||||||||||!!. laIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLys 4296 : CTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAA : 4355 360 : AspLeuIleLeuValIleGluArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePh : 380 ||||||! !!!!||||||! !||||||||| ! !||||||||||||||| !|||||||| AspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePh 4356 : GATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTT : 4418 381 : eProValSerLeuGluThrTyrThrThr >>>> Target Intron 1 >>>> IleLe : 391 |||||||||||||||||||||||||:!! 1970 bp :!!:! eProValSerLeuGluThrTyrThrSer++ ++ValIl 4419 : CCCTGTGTCACTGGAAACGTACACTTCGgt.........................agGTTAT : 6421 392 : uSerThrAlaValSerTyrPheThrLeuLeuArgAsnAsnLeuGluGlu : 407 !|||||||||||||||||||||||||||||||||.!...!:!!|||!!: eSerThrAlaValSerTyrPheThrLeuLeuArgGlnArgIleGluAsp 6422 : AAGTACAGCAGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAGGAC : 6471 vulgar: AfOr80 297 407 . KQ414828.1 4171 6471 + 313 M 92 276 5 0 2 I 0 1966 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 4172 6471 313 + . gene_id 6 ; sequence AfOr80 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6471 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6471 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 4172 6471 313 + . alignment_id 6 ; Query AfOr80 ; Align 4172 298 276 ; Align 6418 390 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr80 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 238 Query range: 56 -> 190 Target range: 26897 -> 27465 57 : IleTyrPheThrPheMetTyrAsnGlyAspIleLeuTyrValIleThrAsnPheLeuThr : 76 :::||| |||:::::: !! ! !:!!|||:!! ! !||| !|||.!! LeuTyrVal***PheLeuPheLeuGlnValCysMetTyrMetAlaGlyAsnGlyLeuAla 26898 : ttatacgtctaatttctatttctacaGGTTTGCATGTACATGGCTGGCAACGGTTTAGCC : 26955 77 : ValMetIleSerPheValLysIleIleIleIleMetIleTyrLysLysGluPheIleAsp : 96 :!!:!::!:..!.!.:!!||||||.!!! !:!!:!::!!:!!||||||:!!|||:!!! ! MetValLeuAspIleIleLysIlePheThrLeuValValHisLysLysLysPheLeuGly 26956 : ATGGTTTTGGATATAATCAAGATTTTCACCCTAGTCGTACACAAGAAAAAGTTTCTCGGT : 27015 97 : MetIleLeuTyrMetGluLysAsnPheTrpAsnValLysTyrAspPheGlnGluGluGlu : 116 :!!||| !||||||:!!||||||||||||:!!:!!!!.|||||| ! |||.!.... LeuIleGluTyrMetGlnLysAsnPheTrpHisLeuAsnTyrAspGlnTyrGluAsnSer 27016 : CTGATTGAGTACATGCAGAAGAATTTTTGGCATTTGAACTACGATCAGTACGAGAATTCT : 27075 117 : IleLeuAsnAsnCysArgLysThrCysIlePhePheValThrSerValSerThrIleGly : 136 :!!||| .!....!:!::!! !||||||!:!|||||| :::||| ...... ValLeuAlaGlnAlaLysArgMetCysIleTyrPheValCysValLeuSerPhePheSer 27076 : GTTTTGGCACAGGCGAAACGAATGTGCATTTACTTCGTGTGcgttttgtcatttttttct : 27135 137 : IleCysAlaMetIleSerTyrAlaIleThrProIleIle{G} >>>> Target Intr : 150 :!!:!::!!|||||| !|||! !|||:!!:!!{.} 169 bp GlnSerSerValLeuSerTyrIleIleArgProLeuVal{S}++ 27136 : caatctTCAGTTCTTTCCTATATCATAAGGCCACTTGTA{T}gt................ : 27180 151 : on 1 >>>> {lu}TyrTyrThrGluAsnLeuSerGluArgIleLeuProPheHisVal : 165 {.!} !! ! !:!!||| !|||!!:||| !! ! !||| !!:!! ++{er}AsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMet 27181 : .........ag{ca}AATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATG : 27391 166 : TrpLeuAsnLeuProIleIleSerValThrProTyrTyrGluIleLeuPheAlaAlaGlu : 185 |||!!!:!!|||||| :!!|||||||||||||||||||||||| ::! ! !:!! TrpPheAspLeuPro---LeuSerValThrProTyrTyrGluIleThrTyrIleIleGln 27392 : TGGTTCGATCTACCA---TTATCCGTAACAccatattatgaaattacttACATAATACAG : 27448 186 : ValLeuSerIleTyr : 190 |||||| !!|||!:! ValLeuProIlePhe 27449 : GTATTACCAATTTTC : 27465 vulgar: AfOr80 56 190 . KQ414828.1 26897 27465 + 238 M 93 279 S 0 1 5 0 2 I 0 165 3 0 2 S 1 2 M 20 60 G 1 0 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26898 27465 238 + . gene_id 7 ; sequence AfOr80 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 26898 27177 . + . KQ414828.1 exonerate:protein2genome:local exon 26898 27177 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 27178 27179 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 27178 27346 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 27345 27346 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 27347 27465 . + . KQ414828.1 exonerate:protein2genome:local exon 27347 27465 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 26898 27465 238 + . alignment_id 7 ; Query AfOr80 ; Align 26898 57 279 ; Align 27349 151 60 ; Align 27409 172 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr80 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 198 Query range: 292 -> 390 Target range: 28490 -> 28784 293 : TyrGlnIleLeuValAsnAspValSerIleGlyArgArgSerIlePheValPheLeuLeu : 312 |||.!. ! ! !||| ! :!!|||.!!! ! !!||| ! !!!.!.!! !!!!! ! TyrAsnGlyThrGlnAsnLysLeuSerPheGluTrpArgValAlaLeuAlaCysPheSer 28491 : TATAATGGCACACAGAATAAGTTATCATTTGAATGGCGCGTTGCTTTGGCGTGCTTCTCG : 28548 313 : LeuGlySerMetCysLeuLeuPheMetPheThrTyrSerCysAsnSerValIleValHis : 332 :!! !.!!:!! !!! !|||!::||||||||||||||||||:!!!!!:!!! !..!.!. MetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGlu 28549 : ATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAA : 28608 333 : SerGluAsnIleAlaThrGlyAlaTyrSerAlaLeuTrpThrThrMetProMetAsnLys : 352 ||| !||||||||| !..!!.!|||:!!!.!! !|||! !!.!:!:||||||:::||| SerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLys 28609 : AGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaa : 28668 353 : PheGlyArgMetLeuArgAsnAspLeuIleLeuValIleGluArgSerArgArgValCys : 372 ||||||::::::||||||!!.|||||| !:!!:!!||| !|||:!!|||||| !! ! PheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSer 28669 : tttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCC : 28728 373 : CysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrThrIle : 390 ! !||||||||| !||||||||| !!:!!||||||||||||!:!|||! !:!! SerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 28729 : TCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 28784 vulgar: AfOr80 292 390 . KQ414828.1 28490 28784 + 198 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28491 28784 198 + . gene_id 8 ; sequence AfOr80 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28491 28784 . + . KQ414828.1 exonerate:protein2genome:local exon 28491 28784 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28491 28784 198 + . alignment_id 8 ; Query AfOr80 ; Align 28491 293 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr80 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 56 -> 149 Target range: 31943 -> 32222 57 : IleTyrPheThrPheMetTyrAsnGlyAspIleLeuTyrValIleThrAsnPheLeuThr : 76 :!!||| |||:::::: ! ! !:!!|||:!! ! !||| !:!!.!! LeuTyrVal***PheLeuPheLeuGlnValCysMetTyrMetAlaCysAsnSerIleAla 31944 : TTATACGtctaatttctatttcttcagGTTTGCATGTACATGGCATGCAACAGTATAGCC : 32001 77 : ValMetIleSerPheValLysIleIleIleIleMetIleTyrLysLysGluPheIleAsp : 96 :!!:!::!:..!.!.:!!||||||.!!:!!:!!:!::!! ||||||:!!|||:!!! ! LeuValLeuAspIleIleLysIlePheValLeuValValArgLysLysLysPheLeuGly 32002 : CTGGTTTTGGATATAATCAAGATTTTCGTCCTAGTCGTACGGAAGAAAAAGTTTCTCGGT : 32061 97 : MetIleLeuTyrMetGluLysAsnPheTrpAsnValLysTyrAspPheGlnGluGluGlu : 116 :!!||| !||||||:::|||||||||:::::::::...|||||| .!.|||.!.... LeuIleGluTyrMetGlnLysAsnPhePheHisLeuAsnTyrAspGlnAspGluAsnSer 32062 : CTGATTGAGTACATgcagaagaatttctttcatttgaaCTACGATCAGGACGAGAATTCT : 32121 117 : IleLeuAsnAsnCysArgLysThrCysIlePhePheValThrSerValSerThrIleGly : 136 |||:!! :!!...!:!::!|||||||||!:!|||||| ! ! !!||| ! !..! IleIleAlaHisAlaLysArgThrCysIleTyrPheValCysValPheSerPheCysSer 32122 : ATTATCGCACACGCGAAACGAACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTTCT : 32181 137 : IleCysAlaMetIleSerTyrAlaIleThrProIleIle : 149 !! !.!!:!:.!!|||||| !|||! !|||.!!:!! GlnSerThrValPheSerTyrIleIleArgProPheVal 32182 : CAATCTACAGTTTTTTCCTATATAATAAGGCCATTTGTA : 32222 vulgar: AfOr80 56 149 . KQ414828.1 31943 32222 + 170 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31944 32222 170 + . gene_id 9 ; sequence AfOr80 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 31944 32222 . + . KQ414828.1 exonerate:protein2genome:local exon 31944 32222 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31944 32222 170 + . alignment_id 9 ; Query AfOr80 ; Align 31944 57 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr80 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 7 -> 61 Target range: 727 -> 889 8 : AspValSerMetSerLeuSerIlePhePheLeuLysAsnValGlyValTrpIleSerAsnAspP : 29 |||:!!:!!:!!!!!:!!!!! !|||!:!||||||! !:!!||| !!|||:!!:!!:!! ! AspIleAlaValThrValThrAlaPheTyrLeuLysIleIleGlyPheTrpLeuAlaAspThrT 728 : GACATAGCGGTGACCGTTACGGCTTTCTACTTGAAAATTATCGGCTTCTGGTTAGCTGACACTT : 791 30 : roAlaGluLysArgArgMetLysIleLeuValLeuIleThrLeuTrpAsnThrMetLeuGlyAl : 50 !! !|||||||||||| |||... ! !.!!|||:!!!::! !:!!! !!.!!. yrGluGluLysArgArgArgLysPheAlaGlnAsnPheThrIlePheMetLeuValCysAlaVa 792 : ACGAGGAGAAacgtcgaagaaaattcgcgcAGAATTTCACGATATTTATGCTGGTGTGCGCTGT : 854 51 : aValValIlePheArgAspIleTyrPheThrPhe : 61 !|||:!! ||||||||||||!:!|||!:: lValIleGluThrArgAspIleTyrTyrThrTrp 855 : GGTAATTGAGACGAGGGATATCTATTACACCTGG : 889 vulgar: AfOr80 7 61 . KQ414828.1 727 889 + 102 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 728 889 102 + . gene_id 10 ; sequence AfOr80 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 728 889 . + . KQ414828.1 exonerate:protein2genome:local exon 728 889 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 728 889 102 + . alignment_id 10 ; Query AfOr80 ; Align 728 8 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr90 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1288 Query range: 1 -> 401 Target range: 7899 -> 13158 2 : GluLysGluLeuAspIleSerValAsnLeuSerSerPhePheLeuLysSerIleGlyLeu : 21 ||||||!!:! !|||||||||:!!|||||||||!.!|||||||||:::!:!:!!|||||| GluLysAspSerAspIleSerIleAsnLeuSerLysPhePheLeuArgAsnValGlyLeu 7900 : GAGAAGGATTCGGACATATCGATCAACTTGTCGAAATTCTTCTTGCGCAATGTCGGCCTG : 7957 22 : TrpIleAlaAspAspSerThrAspGluArgArgArgLysGlyMetLeuAlaTyrThrVal : 41 |||! |||!!::!! !.!!!!:.!.|||!:!||||||!.!:!!:!!|||||||||:!! TrpArgAlaGluAsnHisAlaGluAsnArgLysArgLysAlaLeuValAlaTyrThrIle 7958 : TGGAGGGCTGAGAATCACGCGGAGAATCGTAAAAGGAAAGCGTTGGTCGCCTACACGATT : 8017 42 : TrpCysThrPhePheSerThrValIleThrSerArgAspLeuTyrPheThrTrpIleTyr : 61 ||| !! !|||!!.:!!! !|||:!! !!!!||||||:!!||||||||||||.!!||| TrpAsnMetPheLeuAlaIleValValGluThrArgAspMetTyrPheThrTrpPheTyr 8018 : TGGAACATGTTTTTGGCCATAGTGGTTGAAACGAGAGATATGTATTTCACCTGGTTCTAT : 8077 62 : AsnGly >>>> Target Intron 1 >>>> AspIleLeuTyrAlaLeuThrAsnT : 72 !!.||| 796 bp ||||||||||||!.! !||||||! LysGly++ ++AspIleLeuTyrValSerThrAsnL 8078 : AAAGGCgt.........................agGATATTCTTTACGTTAGTACCAACT : 8906 73 : yrThrSerValMetMetIleLeuLeuLysIleCysValIleValValHisLysGlyGluP : 92 !||||||!!::!:! ! !:!!|||:!! !|||:!!:!!:!!||||||! !|||| euLeuSerValIleLeuThrThrIleLysLeuThrValValLeuIleHisLysValGluP 8907 : TACTGAGCGTGATCTTAACTACGATCAAGCTAACTGTCGTACTAATACACAAAGTGGAAT : 8966 93 : heIleAsnLeuIleValHisMetGlnGlnTyrPheTrpAsnValAsnTyrAspSerArgG : 112 ||!!:!:!||||||! !:!!||| ! :!!:!!||||||||||||:!!|||||| !!.!| heMetSerLeuIleAspTyrMetTyrGluHisPheTrpAsnValAspTyrAspLeuHisG 8967 : TCATGAGTCTGATTGATTACATGTACGAACATTTCTGGAACGTGGATTACGATCTTCACG : 9026 113 : luLysGluIleLeuAsnSerCysLysLysThrCysAlaPhePheValSerSerValThrP : 132 |||||..!|||:!:::::::||||||||||||||| !.!!|||..!|||||||||||| luLysArgIleMetAspAsnCysLysLysThrCysIleIlePheThrSerSerValThrT 9027 : AGAAAAGAATTATggataattgtaaaaaaactTGCATCATCTTCACTTCAAGCGTCACTA : 9086 133 : heIleGlyIleCysAlaIleLeuSerTyrLeuThrThrProPheThr{A} >>>> Tar : 148 !||||||||||||||||||:!!||||||:!!.!!|||||||||! !{ } hrIleGlyIleCysAlaIleIleSerTyrIleAlaThrProPheIle{M}++ 9087 : CCATTGGCATATGCGCTATAATATCTTACATAGCGACACCGTTTATC{A}gt........ : 9137 149 : get Intron 2 >>>> {la}ArgIleGlyAsnAsnGluSerGluArgIleLeuProP : 161 192 bp { !}!.!! ! !!:!|||:!!||||||||| !!!! !| ++{et}HisSerGlnSerAsnLysSerGluArgAlaPheLeuP 9138 : .................ag{TG}CACAGTCAAAGCAACAAATCTGAAAGAGCGTTTCTGT : 9365 162 : heAsnMetTrpLeuAsnLeuProLeuSerGlnThrProTyrTyrGluLeuSerPheIleI : 181 ||:!!|||||||||||||||||||||!!! :!!|||||||||||| !! !!!. !: heAspMetTrpLeuAsnLeuProLeuThrValSerProTyrTyrGluGlyMetLeuAlaV 9366 : TCGACATGTGGCTCAATTTACCTCTGACTGTTTCGCCTTACTACGAAGGAATGTTGGCTG : 9425 182 : leGln >>>> Target Intron 3 >>>> IleValThrLeuTyrCysIleGlyIl : 191 !!||| 1401 bp ||| ! !||||||! !! !||||| alGln++ ++IleSerGlyLeuTyrPheThrGlyIl 9426 : TACAGgt.........................agATTTCAGGACTGTATTTCACAGGAAT : 10856 192 : eCysTyrPheCysPheAspAsnValPheCysIleMetAlaIleHisLeuThrGlyGlnPh : 211 ||||||||||||||||||||||:!!||||||||||||::!:!:||||||!:!|||||||| eCysTyrPheCysPheAspAsnIlePheCysIleMetSerValHisLeuSerGlyGlnPh 10857 : CTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTGCATTTGAGTGGCCAGTT : 10916 212 : eArgIleLeuGlyTyrArgPheThrLysLeuCysAspThr<-><->GluIleCysGluLy : 229 |||||||||| !||||||!!.|||||||||! !|||..! :!!||| ||||| eArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGlnTyrGlnIleSerGluLy 10917 : TCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAATATCAGATAAgcgagaa : 10976 230 : sGlyAlaGluSerGlyLeuAlaLysArgValHisThrCysTyrGluLysPheLysGluHi : 249 |... ||||||! !|||! ! ! !!..!!.!! !! !|||||||||||||||...:! sAsnMetGluSerValLeuGluAspCysThrArgArgSerTyrGluLysPheLysSerTy 10977 : aaatatggaatcTGTATTGGAAGACTGTACACGTAGATCTTACGAGAAATTTAAGAGTTA : 11036 250 : sValArgTyrHisGlnAlaLeuIleAsnPheTyrThrLysLeuGluAsnValTyrThrMe : 269 !|||||| ! ||||||.!!||||||:!!!:!||| !|||||||||:!!|||||||||! rValArgGlnHisGlnThrLeuIleAspTyrTyrGluLysLeuGluHisValTyrThrLy 11037 : CGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAGCTTGAACACGTTTACACGAA : 11096 270 : tIleIleLeuGlyGlnValIleLeuPheSerValLeuIleCysLeuPheCysTyrGlnVa : 289 ||||||||||||||||||:!!||||||||||||||||||||||||||| !!||||||:! sIleIleLeuGlyGlnValLeuLeuPheSerValLeuIleCysLeuPheGlyTyrGlnIl 11097 : AATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATTTGCCTCTTTGGTTATCAGAT : 11156 290 : lLeuLeu >>>> Target Intron 4 >>>> AlaAsnAlaProSerAlaArgArg : 299 !|||||| 1305 bp ||||||.!! !! !||||||||| eLeuLeu++ ++AlaAsnThrSerLeuAlaArgArg 11157 : ATTATTGgt.........................agGCTAATACTTCTCTTGCAAGGCGC : 12491 300 : SerIlePheIlePheLeuLeuIleGlyAlaMetSerLeuLeuPheMetPheThrTyrSer : 319 |||||||||!!:||||||:!! !||||||||| !|||||||||||||||||||||||| SerIlePheMetPheLeuIleCysGlyAlaMetValLeuLeuPheMetPheThrTyrSer 12492 : AGTATTTTCATGTTCCTCATATGTGGCGCCATGGTTTTATTGTTTATGTTCACCTACAGC : 12551 320 : CysAspGlyValIleGluGlnSerAspAsnValAlaValGluAlaTyrSerAlaLeuTrp : 339 |||:!! !|||||||||||||||||||||:!!||| !!! !|||||||||||||||||| CysAsnMetValIleGluGlnSerAspAsnIleAlaPheAlaAlaTyrSerAlaLeuTrp 12552 : TGCAATATGGTGATAGAACAAAGCGATAATATTGCTTTTGCGGCGTATTCGGCACTATGG : 12611 340 : ThrIleLeuProMetAspLysPheGlyArgMetIleArgLysAspLeuIleMetValMet : 359 ||| !:!!||||||:!!||| !|||!:!! !:!!||| ! |||||||||||||||!!: ThrGlyMetProMetAsnLysThrGlyLysLysLeuArgHisAspLeuIleMetValIle 12612 : ACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTACGGCATGATTTGATAATGGTCATT : 12671 360 : GluArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePheProValSerLeuGlu : 379 ! !||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GlyArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePheProValSerLeuGlu 12672 : GGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATGGATTTTTCCCTGTGTCCTTAGAA : 12731 380 : ThrTyrThrThr >>>> Target Intron 5 >>>> IleLeuSerThrAlaValS : 390 |||||||||||| 359 bp |||||||||||||||!.!| ThrTyrThrThr++ ++IleLeuSerThrAlaAlaS 12732 : ACTTATACTACGgt.........................agattttgAGTACCGCGGCGT : 13123 391 : erTyrPheThrLeuLeuArgAsnAsnValGluAsn : 401 ||||||||||||||||||||||||||||||||:!! erTyrPheThrLeuLeuArgAsnAsnValGluAsp 13124 : CGTACTTCACATTATTGAGAAATAACGTAGAAGAT : 13158 vulgar: AfOr90 1 401 . KQ414828.1 7899 13158 + 1288 M 62 186 5 0 2 I 0 792 3 0 2 M 84 252 S 0 1 5 0 2 I 0 188 3 0 2 S 1 2 M 34 102 5 0 2 I 0 1397 3 0 2 M 42 126 G 0 6 M 67 201 5 0 2 I 0 1301 3 0 2 M 92 276 5 0 2 I 0 355 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 7900 13158 1288 + . gene_id 1 ; sequence AfOr90 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 7900 8085 . + . KQ414828.1 exonerate:protein2genome:local exon 7900 8085 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 8086 8087 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 8086 8881 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 8880 8881 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 8882 9134 . + . KQ414828.1 exonerate:protein2genome:local exon 8882 9134 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 9135 9136 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 9135 9326 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 9325 9326 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 9327 9430 . + . KQ414828.1 exonerate:protein2genome:local exon 9327 9430 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 9431 9432 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 9431 10831 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 10830 10831 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 10832 11164 . + . KQ414828.1 exonerate:protein2genome:local exon 10832 11164 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 11165 11166 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 11165 12469 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 12468 12469 . + . intron_id 3 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 12470 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12745 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13104 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 13103 13104 . + . intron_id 4 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 13105 13158 . + . KQ414828.1 exonerate:protein2genome:local exon 13105 13158 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 7900 13158 1288 + . alignment_id 1 ; Query AfOr90 ; Align 7900 2 186 ; Align 8882 64 252 ; Align 9329 149 102 ; Align 10832 183 126 ; Align 10964 225 201 ; Align 12470 292 276 ; Align 13105 384 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr90 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 601 Query range: 145 -> 404 Target range: 2873 -> 6480 146 : PheThrAlaArgIleGlyAsnAsnGluSerGluArgIleLeuProPheAsnMetTrpLeuAs : 166 |||:!!|||! ||||||...|||||||||!!:|||:!!||| ! !!|||.!.|||:!!:! PheSerAlaSerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAs 2874 : TTCTCAGCAAgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGA : 2934 167 : nLeuProLeuSerGlnThrProTyrTyrGluLeuSerPheIleIleGln >>>> Target : 183 !||||||:!!!!! |||||||||||||||::: ||| |||||| 4 pLeuProIleThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2935 : CCTGCCGATAACCATCACACCATactatgaaatattatttacgaTACAGgt........... : 2987 184 : Intron 1 >>>> IleValThrLeuTyrCysIleGlyIleCysTyrPheCysPheAspA : 198 06 bp ||| !!! !:!! ! !:!! !!||| !!|||.!!|||.!!|||| ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspA 2988 : ..............agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACA : 3436 199 : snValPheCysIleMetAlaIleHisLeuThrGlyGlnPheArgIleLeuGlyTyrArgPhe : 218 || !!.!.|||!!:!!: !:!!||| !.!! !||||||||||||||| !||||||.!. snPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeu 3437 : ATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTG : 3496 219 : ThrLysLeuCysAspThrGluIleCysGluLysGlyAlaGluSerGlyLeuAlaLysArgVa : 239 :!!!!.:!!|||! !.!!.!. ! !!... ...... !!...!.! SerAsnValCysGlyAlaAsnGluArgSerAspLysIleSerLysLysThrProSerAsnSe 3497 : TCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTC : 3559 240 : lHisThrCysTyrGluLysPheLysGluHisValArgTyrHisGlnAlaLeuIleAsnPheT : 260 ! !! !||||||! |||||||||.!. !:!!!:! ! |||||||||||||||.!.!:!! rAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrC 3560 : GGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACT : 3622 261 : yrThrLysLeuGluAsnValTyrThrMetIleIleLeuGlyGlnValIleLeuPheSerVal : 280 !!.!||||||:!!.!.|||!:! !!!:.!!:!:|||!.!||||||:!:|||||||||:!! ysAsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeu 3623 : GTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTG : 3682 281 : LeuIleCysLeuPheCysTyrGlnValLeuLeu >>>> Target Intron 2 >>>> : 292 |||!!:|||||| ! ! ||| :!!:!!:!! 457 bp LeuMetCysLeuAspGlyTyr---LeuValMet++ ++ 3683 : TTAATGTGCCTCGATGGATAT---TTGGTGATGgt.........................ag : 4170 293 : AlaAsnAlaProSerAlaArgArgSerIlePheIlePheLeuLeuIleGlyAlaMetSerLe : 312 ! !:!!.!!|||! ! !!:!||| !! !|||:!:|||! !|||! |||..!:!!!!!! GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGl 4171 : GAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCA : 4232 313 : uLeuPheMetPheThrTyrSerCysAspGlyValIleGluGlnSerAspAsnValAlaValG : 333 !|||!!.||||||||||||||||||||| !!:!!|||..!:!!||| ||||||||| !! nLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnA 4233 : ACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATG : 4295 334 : luAlaTyrSerAlaLeuTrpThrIleLeuProMetAspLysPheGlyArgMetIleArgLys : 353 !|||..!..!! !|||! ! !||||||||||||!:!! !|||||||||:!:|||||| laIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLys 4296 : CTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAA : 4355 354 : AspLeuIleMetValMetGluArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePh : 374 ||||||! !.!.|||!!:! !||||||||| ! !||||||||||||||| !|||||||| AspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePh 4356 : GATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTT : 4418 375 : eProValSerLeuGluThrTyrThrThr >>>> Target Intron 3 >>>> IleLe : 385 |||||||||||||||||||||||||:!! 1970 bp :!!:! eProValSerLeuGluThrTyrThrSer++ ++ValIl 4419 : CCCTGTGTCACTGGAAACGTACACTTCGgt.........................agGTTAT : 6421 386 : uSerThrAlaValSerTyrPheThrLeuLeuArgAsnAsnValGluAsnAspLysAsn : 404 !|||||||||||||||||||||||||||||||||.!...!:!!|||:!!..!!!.!:! eSerThrAlaValSerTyrPheThrLeuLeuArgGlnArgIleGluAspSerAsnSer 6422 : AAGTACAGCAGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAGGACAGCAATAGT : 6480 vulgar: AfOr90 145 404 . KQ414828.1 2873 6480 + 601 M 37 111 5 0 2 I 0 402 3 0 2 M 105 315 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2874 6480 601 + . gene_id 2 ; sequence AfOr90 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2874 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2874 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6480 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6480 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2874 6480 601 + . alignment_id 2 ; Query AfOr90 ; Align 2874 146 111 ; Align 3391 183 315 ; Align 3706 289 9 ; Align 4172 292 276 ; Align 6418 384 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr90 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 592 Query range: 147 -> 404 Target range: 32392 -> 34322 148 : AlaArgIleGlyAsnAsnGluSerGluArgIleLeuProPheAsnMetTrpLeuAsnLeu : 167 |||!.!:!!|||!!.|||||||||!!:||| !! ! !!:!:!!|||||||||:!!||| AlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeu 32393 : gcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTA : 32450 168 : ProLeuSerGlnThrProTyrTyrGluLeuSerPheIleIleGln >>>> Target I : 183 ||||||||| !|||||||||||||||::::::::!||||||||| 307 ProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGln++ 32451 : CCATTATCCGTAACAccatattatgaaattacttACATAATACAGgt............. : 32500 184 : ntron 1 >>>> IleValThrLeuTyrCysIleGlyIleCysTyrPheCysPheAspA : 198 bp !:!!:!!:!!||| :!!|||:!:||||||.!!|||||||||| ++AlaLeuSerValTyrGlnValGlyValCysTyrLeuCysPheAspA 32501 : ............agGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCTttgata : 32850 199 : snValPheCysIleMetAlaIleHisLeuThrGlyGlnPheArgIleLeuGlyTyrArgP : 218 ||:::||| ||||||..!:!!|||:!!.!!|||||||||||||||||| !||||||. snIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgI 32851 : acatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAA : 32910 219 : heThrLysLeuCysAsp<->ThrGluIleCysGluLysGlyAlaGluSerGlyLeuAlaL : 237 !!.!!!!.:!!! ! ! !:!|||||| :!!!....!! !.!.!!!.!! !|||: leAlaAsnValSerGlyLeuSerGluIleValLysSerAsnAspAsnThrSerThrAlaG 32911 : TTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACAAGCACGGCTG : 32970 238 : ysArgVal<->HisThrCysTyrGluLysPheLysGluHisValArgTyrHisGlnAlaL : 256 !! ! ! .!.! !|||||| |||||||||.!. !:!!!:! ! |||||||||| luLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaL 32971 : AATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCAC : 33030 257 : euIleAsnPheTyrThrLysLeuGluAsnValTyrThrMetIleIleLeuGlyGlnValI : 276 |||||...||| ||||||.!.|||!:!|||:!:|||:!!||||||||||||: euIleGluPheCysGluIleLeuGluGluValPheThrValIleValLeuGlyGlnValL 33031 : TaattgaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTAC : 33090 277 : leLeuPheSerValLeuIleCysLeuPheCysTyrGlnValLeuLeu >>>> Target : 292 !!:!!||||||:!!:!!||||||!!! ! ! |||:!!||||||||| 4 euMetPheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeu++ 33091 : TAATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGgt........... : 33140 293 : Intron 2 >>>> AlaAsnAlaProSerAlaArgArgSerIlePheIlePheLeuLe : 306 06 bp !!.. !|||! !! ! !||| ! !|||! ! !!!!|| ++IleThrLeuProPheGluSerArgValAlaPheThrCysPheLe 33141 : ..............agATAACGTTACCATTTGAATCGCGCGTTGCTTTCACGTGCTTCTT : 33586 307 : uIleGlyAlaMetSerLeuLeuPheMetPheThrTyrSerCysAspGlyValIleGluGl : 326 |||| !!.!:!!|||! !|||!::||||||||||||||||||:!! !!:!!! ! !:! uIleThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAsnCysIleThrThrGl 33587 : GATTACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCAATTGCATAACAACAGA : 33646 327 : nSerAspAsnValAlaValGluAlaTyrSerAlaLeuTrpThrIleLeuProMetAspLy : 346 !||| |||:!!|||! !...!.!|||:!!!.!! !|||! !! !|||||||||||||| uSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLy 33647 : AAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATggataa : 33706 347 : sPheGlyArgMetIleArgLysAspLeuIleMetValMetGluArgSerArgArgValCy : 366 |||||||:::::::!!|||||||||||| !:!!:!!!!: !|||:!!|||||| !! sPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSe 33707 : atttggaaaactgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGAGACGACCTTC : 33766 367 : sCysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrThr >>>> T : 384 !..!||||||||| !||||||||| !!:!!!!!|||||||||!:!|||! ! rAlaLeuThrAlaCysGlyPhePheSerIleThrLeuGluThrPheThrLys++ 33767 : CGCTTTGACTGCCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTACTAAGgt...... : 33822 385 : arget Intron 3 >>>> IleLeuSerThrAlaValSerTyrPheThrLeuLeuArg : 396 440 bp |||:!!||||||:!!:!!||||||||||||||||||!:! ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLys 33823 : ...................agATCATGAGTACATCAATGTCGTATTTCACCCTACTAAAA : 34296 397 : AsnAsnValGluAsnAspLysAsn : 404 .!.!:!!.!|||:!! !||| GlnSerAlaGluAspThrValAsn 34297 : CAAAGTGCCGAGGACACAGTAAAT : 34322 vulgar: AfOr90 147 404 . KQ414828.1 32392 34322 + 592 M 35 105 5 0 2 I 0 303 3 0 2 M 41 123 G 0 3 M 16 48 G 0 3 M 52 156 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32393 34322 592 + . gene_id 3 ; sequence AfOr90 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32393 32497 . + . KQ414828.1 exonerate:protein2genome:local exon 32393 32497 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32498 32499 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32498 32804 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32803 32804 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32805 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32805 33137 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 3 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34322 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34322 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32393 34322 592 + . alignment_id 3 ; Query AfOr90 ; Align 32393 148 105 ; Align 32805 183 123 ; Align 32931 224 48 ; Align 32982 240 156 ; Align 33544 292 276 ; Align 34260 384 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr90 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 579 Query range: 147 -> 404 Target range: 22313 -> 24202 148 : AlaArgIleGlyAsnAsnGluSerGluArgIleLeuProPheAsnMetTrpLeuAsnLeu : 167 |||!.!:!!|||!!.|||||||||!!:||| !! ! !!:!:!!|||||||||:!!||| AlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeu 22314 : gcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTA : 22371 168 : ProLeuSerGlnThrProTyrTyrGluLeuSerPheIleIleGln >>>> Target I : 183 ||||||||| !|||||||||||||||::::::::!||||||||| 307 ProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGln++ 22372 : CCATTATCCGTAACAccatattatgaaattacttACATAATACAGgt............. : 22421 184 : ntron 1 >>>> IleValThrLeuTyrCysIleGlyIleCysTyrPheCysPheAspA : 198 bp !:!!:!!:!!||| :!!.!! ||||||.!!||||||||| ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspI 22422 : ............agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgata : 22771 199 : snValPheCysIleMetAlaIleHisLeuThrGlyGlnPheArgIleLeuGlyTyrArgP : 218 :::||| |||:::...:!!|||:!!.!!|||||||||||||||||| !||||||. leIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgI 22772 : tcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAA : 22831 219 : heThrLysLeuCysAspThrGluIleCysGluLysGlyAlaGluSerGlyLeuAlaLysA : 238 !!.!!!!.:!!! ! ! !... ! !|||.!!::!|||!:! ! !.!! ! . leAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSerThrAspG 22832 : TTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATG : 22891 239 : rgValHisThr<-><->CysTyrGluLysPheLysGluHisValArgTyrHisGlnAlaL : 256 .!:!!:!!:!! |||||| |||||||||.!. !:!!!:! ! |||||||||| luLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaL 22892 : AATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCAC : 22951 257 : euIleAsnPheTyrThrLysLeuGluAsnValTyrThrMetIleIleLeuGlyGlnValI : 276 |||||.!.|||! !.!!! !||||||.!.|||!:!|||:!:|||:!!||||||||||||: euIleGluPheCysAlaThrLeuGluGluValPheThrValIleValLeuGlyGlnValL 22952 : TAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCC : 23011 277 : leLeuPheSerValLeuIleCysLeuPheCysTyrGlnValLeuLeu >>>> Target : 292 !!:!!! !|||:!!|||||||||!!!.!! ! ||||||||||||||| 4 euMetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeu++ 23012 : TAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGgt........... : 23061 293 : Intron 2 >>>> AlaAsnAlaProSerAlaArgArgSerIlePheIlePheLeuLe : 306 92 bp !!!. ! !!! !! ! !||| ! !||| ! !!!!|| ++IleLysLeuSerPheGluSerArgValAlaPheAlaCysPheLe 23062 : ..............agATAAAGTTATCATTTGAATCGCGCGTTGCTTTCGCGTGCTTCTT : 23593 307 : uIleGlyAlaMetSerLeuLeuPheMetPheThrTyrSerCysAspGlyValIleGluGl : 326 |!!: !!.!||||||! !|||!::||||||||||||||||||||| !!:!!! ! !:! uMetMetGlyMetSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGl 23594 : GATGATGGGCATGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCATAACAACAGA : 23653 327 : nSerAspAsnValAlaValGluAlaTyrSerAlaLeuTrpThrIleLeuProMetAspLy : 346 !||| |||:!!|||! !...!.!|||:!!!.!! !|||! !! !|||||||||||||| uSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLy 23654 : AAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATGGACAA : 23713 347 : sPheGlyArgMetIleArgLysAspLeuIleMetValMetGluArgSerArgArgValCy : 366 |||||||!:!:!!:!!||||||!!:||| !|||:!!!!: !|||:!!|||||| !! sPheGlyLysLeuLeuArgLysGluLeuGlnMetLeuIleLeuArgAlaArgArgProSe 23714 : ATTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGGGCGAGACGACCTTC : 23773 367 : sCysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrThr >>>> T : 384 !..!||||||||| !||||||||| !!:!!||||||||||||!:!|||! ! rAlaLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 23774 : CGCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt...... : 23829 385 : arget Intron 3 >>>> IleLeuSerThrAlaValSerTyrPheThrLeuLeuArg : 396 313 bp |||:!!||||||:!!:!!||||||||||||||||||!:! ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLys 23830 : ...................agATCATGAGTACATCAATGTCGTATTTCACATTATTAAAA : 24176 397 : AsnAsnValGluAsnAspLysAsn : 404 .!. !:!!|||:!! !||| GlnCysIleGluAspThrValAsn 24177 : CAATGTATCGAGGACACGGTAAAT : 24202 vulgar: AfOr90 147 404 . KQ414828.1 22313 24202 + 579 M 35 105 5 0 2 I 0 303 3 0 2 M 59 177 G 0 6 M 50 150 5 0 2 I 0 488 3 0 2 M 92 276 5 0 2 I 0 309 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22314 24202 579 + . gene_id 4 ; sequence AfOr90 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22314 22418 . + . KQ414828.1 exonerate:protein2genome:local exon 22314 22418 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22419 22420 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22419 22725 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 23058 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23059 23060 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23059 23550 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 23549 23550 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 23551 23826 . + . KQ414828.1 exonerate:protein2genome:local exon 23551 23826 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23827 23828 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23827 24139 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 24138 24139 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 24140 24202 . + . KQ414828.1 exonerate:protein2genome:local exon 24140 24202 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22314 24202 579 + . alignment_id 4 ; Query AfOr90 ; Align 22314 148 105 ; Align 22726 183 177 ; Align 22909 242 150 ; Align 23551 292 276 ; Align 24140 384 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr90 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 415 Query range: 179 -> 387 Target range: 18030 -> 19644 180 : IleIleGlnIleValThrLeuTyrCysIleGlyIleCysTyrPheCysPheAspAsnVal : 199 |||... ::!:!!:!!|||||| !||||||:!: !!|||||||||||||||||| IlePhe***ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPhe 18031 : attttttaggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgcttcgacaatttt : 18088 200 : PheCysIleMetAlaIleHisLeuThrGlyGlnPheArgIleLeuGlyTyrArg<-><-> : 218 ...||||||||| !:!:||| !.!! !|||||||||:!!||| !|||||| LeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnTyrArgMetAla 18089 : ttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAATACCGAATGGCG : 18148 219 : <->PheThrLysLeuCysAspThrGluIleCysGluLysGlyAlaGluSerGlyLeuAla : 236 .!.||| ! ||| ||| ||| |||:::... :!!!!!.!!:!!::! AsnMetThrAspLeuLysAspLysGluArgLysGluArgAsnMetLysThrSerValSer 18149 : AATATGACCGATTTAAAGGacaaagagaggaaagagagaaatatgaAGACAAGTGTGAGT : 18208 237 : LysArgValHisThr<-><->CysTyrGluLysPheLysGluHisValArgTyrHisGln : 254 ..! ! ! !.!! ||||||.!. .!!|||!!::!!:!!||| ! |||||| SerAlaCysPheAlaThrGluCysTyrAsnValLeuLysAspTyrIleArgGlnHisGln 18209 : TCGGCGTGCTTTGCAACAGAATGTTACAACGTTCTCAAAGATTATATCAGACAGCATCAG : 18268 255 : AlaLeuIleAsnPheTyrThrLysLeuGluAsnValTyrThrMetIleIleLeuGlyGln : 274 !|||||| !!:!! !!.!|||||||||!!.|||!:!!.!!!:|||:!!||||||||| AsnLeuIleAlaTyrCysAsnLysLeuGluLysValPheAsnIleIleValLeuGlyGln 18269 : AACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGTTCAATATCATTGTTCTGGGGCAA : 18328 275 : ValIleLeuPheSerValLeuIleCysLeuPheCysTyrGlnValLeuLeuAlaAsnAla : 294 :!!:!!:!!||||||:!!|||||||||||| ! ! !:!|||:!!|||:!!!.!..! ! LeuLeuMetPheSerMetLeuIleCysLeuAspGlyPheGlnIleLeuMetValGlyMet 18329 : TTGTTAATGTTCAGCATGTTGATCTGTCTCGATGGATTTCAGATACTTATGGTTGGTATG : 18388 295 : ProSer{Al} >>>> Target Intron 1 >>>> {a}ArgArgSerIlePheIle : 303 !|||{ } 975 bp {!}! !||| !||||||||| ArgSer{**}-+ ++{*}ThrArgLeuIlePheIle 18389 : AGAAGT{TA}tt.........................ag{A}ACCCGACTGATTTTCATC : 19390 304 : PheLeuLeuIleGlyAlaMetSerLeuLeuPheMetPheThrTyrSerCysAspGlyVal : 323 |||! !:!! !!.!..!|||!!!! !|||.!.||||||||||||||||||||| !!:!! PheHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIle 19391 : TTTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGCTGCGACTGCATC : 19450 324 : IleGluGlnSerAspAsnValAlaValGluAlaTyrSerAlaLeuTrpThrIleLeuPro : 343 |||..!:!!||| !:!..!|||! !! !!.!||||||!.!! !||||||:!!|||||| IleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyProTrpThrLeuLeuPro 19451 : ATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGACACTTTTACCA : 19510 344 : MetAspLysPheGlyArgMetIleArgLysAspLeuIleMetValMetGluArgSerArg : 363 |||..! ! !|||!:!||||||||||||||||||!!::!:|||!!: !||||||!!! MetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuValIleMetArgSerSer 19511 : ATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCATGAGATCGAGC : 19570 364 : ArgValCysCysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrThr : 383 ! !|||||||||||||||!..||||||||| !||||||||||||||||||||| ! ValProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGluThrTyrThrGly 19571 : GTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAACGTACACAGGG : 19630 384 : IleLeuSerThr : 387 :!!:!! !||| ValIleValThr 19631 : GTAATCGTCACC : 19644 vulgar: AfOr90 179 387 . KQ414828.1 18030 19644 + 415 M 38 114 G 0 9 M 24 72 G 0 6 M 55 165 S 0 2 5 0 2 I 0 971 3 0 2 S 1 1 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 18031 19644 415 + . gene_id 5 ; sequence AfOr90 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 18031 18398 . + . KQ414828.1 exonerate:protein2genome:local exon 18031 18398 . + . insertions 15 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18399 18400 . + . intron_id 1 ; splice_site "TT" KQ414828.1 exonerate:protein2genome:local intron 18399 19373 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 19372 19373 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19374 19644 . + . KQ414828.1 exonerate:protein2genome:local exon 19374 19644 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 18031 19644 415 + . alignment_id 5 ; Query AfOr90 ; Align 18031 180 114 ; Align 18154 218 72 ; Align 18232 242 165 ; Align 19375 298 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr90 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 345 Query range: 145 -> 293 Target range: 37450 -> 38207 146 : PheThrAlaArgIleGlyAsnAsnGluSerGluArgIleLeuProPheAsnMetTrpLeu : 165 ...:::|||!.!:!!|||!!.|||||||||!!:||| !! ! !!:!:!!||||||||| IleSerAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 37451 : atttcagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 37508 166 : AsnLeuProLeuSerGlnThrProTyrTyrGluLeuSerPheIleIleGln >>>> Ta : 183 :!!|||||||||||| !|||||||||||||||::::::::!||||||||| AspLeuProLeuSerIleThrProTyrTyrGluIleThrTyrIleIleGln++ 37509 : GATCTACCATTATCCATAACAccatattatgaaattacttACATAATACAGgt....... : 37564 184 : rget Intron 1 >>>> IleValThrLeuTyrCysIleGlyIleCysTyrPheCysP : 196 307 bp !:!!:!!:!!||| :!!.!! ||||||.!!|||| ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysP 37565 : ..................agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCt : 37908 197 : heAspAsnValPheCysIleMetAlaIleHisLeuThrGlyGlnPheArgIleLeuGlyT : 216 ||||| :::||| |||:::...:!!|||:!!.!!|||||||||||||||||| !| heAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnT 37909 : ttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAAT : 37968 217 : yrArgPheThrLysLeuCysAspThrGluIleCysGluLysGlyAlaGluSerGlyLeuA : 236 |||||.!!.!!!!.:!!! ! ! !... ! !|||.!!::!|||!:! ! !. yrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSerT 37969 : ACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCA : 38028 237 : laLysArgValHisThr<-><->CysTyrGluLysPheLysGluHisValArgTyrHisG : 254 !! ! ..!:!!:!!:!! |||||| |||||||||.!. !:!!!:! ! |||| hrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisG 38029 : CAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATC : 38088 255 : lnAlaLeuIleAsnPheTyrThrLysLeuGluAsnValTyrThrMetIleIleLeuGlyG : 274 |||||||||||.!.|||! !.!!! !||||||.!.|||!:!|||:!:||| !||||||| lnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyG 38089 : AGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGAC : 38148 275 : lnValIleLeuPheSerValLeuIleCysLeuPheCysTyrGlnValLeuLeuAlaAsn : 293 |||||:!!:!!||||||:!!|||||||||!!! !! ||||||!.!||||||!.!!:! lnValLeuMetPheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeuValSer 38149 : AAGTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGGTGAGT : 38207 vulgar: AfOr90 145 293 . KQ414828.1 37450 38207 + 345 M 37 111 5 0 2 I 0 303 3 0 2 M 59 177 G 0 6 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37451 38207 345 + . gene_id 6 ; sequence AfOr90 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37451 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37451 37561 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 38207 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 38207 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37451 38207 345 + . alignment_id 6 ; Query AfOr90 ; Align 37451 146 111 ; Align 37869 183 177 ; Align 38052 242 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr90 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 209 Query range: 302 -> 384 Target range: 38514 -> 38760 303 : IlePheLeuLeuIleGlyAlaMetSerLeuLeuPheMetPheThrTyrSerCysAspGly : 322 !!:||| ! !!!: !!.!:!!|||! !|||!::||||||||||||||||||||| !! MetPheAlaThrMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCys 38515 : ATGTTCGCAACGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGC : 38572 323 : ValIleGluGlnSerAspAsnValAlaValGluAlaTyrSerAlaLeuTrpThrIleLeu : 342 :!!! ! !:!!||| |||:!!|||! !...!.!|||:!!!.!! !|||! !! !||| IleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeu 38573 : ATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTA : 38632 343 : ProMetAspLysPheGlyArgMetIleArgLysAspLeuIleMetValMetGluArgSer : 362 ||||||||||||||||||:::::::!!|||||||||||| !:!!:!!!!: !|||:!! ProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAla 38633 : CCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCG : 38692 363 : ArgArgValCysCysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThr : 382 |||||| !! !! !||||||||| !||||||||| !!:!!||||||||||||!:!||| ArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThr 38693 : AGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACT : 38752 383 : ThrIle : 384 ! !:!! LysVal 38753 : AAGGTA : 38760 vulgar: AfOr90 302 384 . KQ414828.1 38514 38760 + 209 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38515 38760 209 + . gene_id 7 ; sequence AfOr90 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38515 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38515 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38515 38760 209 + . alignment_id 7 ; Query AfOr90 ; Align 38515 303 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr90 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 308 -> 384 Target range: 28556 -> 28784 309 : AlaMetSerLeuLeuPheMetPheThrTyrSerCysAspGlyValIleGluGlnSerAsp : 328 !.!:!!|||! !|||!::||||||||||||||||||||| !!:!!! ! !:!!||| GlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeu 28557 : GGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTG : 28614 329 : AsnValAlaValGluAlaTyrSerAlaLeuTrpThrIleLeuProMetAspLysPheGly : 348 |||:!!|||! !...!.!|||:!!!.!! !|||! !! !||||||||||||||||||||| AsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGly 28615 : AACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttgga : 28674 349 : ArgMetIleArgLysAspLeuIleMetValMetGluArgSerArgArgValCysCysLeu : 368 :::::::!!|||||||||||| !:!!:!!!!: !|||:!!|||||| !! !! !||| LysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeu 28675 : aaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTG : 28734 369 : ThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrThrIle : 384 |||||| !||||||||| !!:!!||||||||||||!:!|||! !:!! ThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 28735 : ACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 28784 vulgar: AfOr90 308 384 . KQ414828.1 28556 28784 + 205 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28557 28784 205 + . gene_id 8 ; sequence AfOr90 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28557 28784 . + . KQ414828.1 exonerate:protein2genome:local exon 28557 28784 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28557 28784 205 + . alignment_id 8 ; Query AfOr90 ; Align 28557 309 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr90 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 147 -> 184 Target range: 17824 -> 17935 148 : AlaArgIleGlyAsnAsnGluSerGluArgIleLeuProPheAsnMetTrpLeuAsnLeu : 167 |||...||||||...||||||||||||||||||||||||||||||||||||:!!|||||| AlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpValAsnLeu 17825 : gcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTCAACTTG : 17882 168 : ProLeuSerGlnThrProTyrTyrGluLeuSerPheIleIleGlnIleVal : 184 |||||||||..!|||||||||||||||::::::||| :::|||:!!::: ProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGlnValLeu 17883 : CCATTATCAATGACGCCATATTACgaaataactttttcattaCAGGTAttg : 17935 vulgar: AfOr90 147 184 . KQ414828.1 17824 17935 + 157 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17825 17935 157 + . gene_id 9 ; sequence AfOr90 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 17825 17935 . + . KQ414828.1 exonerate:protein2genome:local exon 17825 17935 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17825 17935 157 + . alignment_id 9 ; Query AfOr90 ; Align 17825 148 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr90 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 147 -> 187 Target range: 27345 -> 27465 148 : AlaArgIleGlyAsnAsnGluSerGluArgIleLeuProPheAsnMetTrpLeuAsnLeu : 167 |||!.!:!!|||!!.|||||||||!!:||| !! ! !|||:!!||||||!!!:!!||| AlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPheAspLeu 27346 : gcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTCGATCTA : 27403 168 : ProLeuSerGlnThrProTyrTyrGluLeuSerPheIleIleGlnIleValThrLeuTyr : 187 ||||||||| !|||||||||||||||::::::::!|||||||||:!!:!! !!:!!!:! ProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuProIlePhe 27404 : CCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCAATTTTC : 27463 vulgar: AfOr90 147 187 . KQ414828.1 27345 27465 + 124 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27346 27465 124 + . gene_id 10 ; sequence AfOr90 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27346 27465 . + . KQ414828.1 exonerate:protein2genome:local exon 27346 27465 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27346 27465 124 + . alignment_id 10 ; Query AfOr90 ; Align 27346 148 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr90 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 5 -> 59 Target range: 15121 -> 15283 6 : AspIleSerValAsnLeuSerSerPhePheLeuLysSerIleGlyLeuTrpIleAlaAsp : 25 |||||||||:!!!:!|||!!!||| !!|||:!!|||! !:!!|||||||||!!:|||... AspIleSerIleSerLeuThrSerValPheMetLysIleValGlyLeuTrpMetAlaSer 15122 : GACATATCAATCAGCCTGACGTCCGTTTTCATGAAGATCGTTGGACTGTGGATGGCGTCG : 15179 26 : AspSerThrAspGluArgArgArgLysGlyMetLeuAlaTyrThrValTrpCysThrPhe : 45 :!! !! !!!::!!||| !|||!!. !! !|||..!||||||:!! ...! !.!! AsnArgPheGluGlnArgValArgAsnIleThrLeuCysTyrThrLeuIleAlaIleLeu 15180 : AACCGTTTCGAGCAACGAGTACGAAATATCACGCTGTGTTACACGCTGATCGCGATTCTC : 15239 46 : PheSerThrValIleThrSerArgAspLeuTyrPheThrTrp : 59 |||:!! ! !||| !! !! !|||||||||!:!:!!||| PheAlaLeuTrpIleGlnMetThrAspLeuTyrTyrSerTrp 15240 : TTCGCCCTGTGGATACAAATGACGGATTTGTATTACTCGTGG : 15283 vulgar: AfOr90 5 59 . KQ414828.1 15121 15283 + 119 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15122 15283 119 + . gene_id 11 ; sequence AfOr90 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 15122 15283 . + . KQ414828.1 exonerate:protein2genome:local exon 15122 15283 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15122 15283 119 + . alignment_id 11 ; Query AfOr90 ; Align 15122 6 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr97P Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 575 Query range: 142 -> 402 Target range: 1234335 -> 1233123 143 : IleTyrLysAsnValLeuLeuSerAlaLeuLeuLeuPheLeuLeuLeuProLeuPh : 161 .!!!:!..!:!!..!||||||||| !:!!:!!:!!|||||||||:!!|||||| ! PhePheSerAspThrLeuLeuSerPheMetValValPheLeuLeuValProLeuVa 1234335 : TTCTTCTCAGATACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGT : 1234281 162 : eProSerPheLeuAspValValPheProLeuAsnGluThrArgGlnGlnLeuGlnI : 180 ! ! !!|||||||||||||||.!!||||||||||||||||||! !!:!! !||| lPheProPheLeuAspValValLeuProLeuAsnGluThrArgProArgGlnGlnG 1234280 : TTTTCCATTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAG : 1234224 181 : lePheLysMetLysTyr<->PheIleLysGluAspGlnTyrPheTyrProIleTyr : 197 !|||!:!:!:!!.||| !:!.!! ! |||! .!.||||||!:! !:!:||| lyPheArgValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyr 1234223 : GATTCAGAGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTAC : 1234170 198 : PheHisSerValTrpSerSerPheValIleIleMetIleThrValThrIleAspSe : 216 |||!!.! !!.!|||.!!:!! !!|||:!!:!!||||||! !:!!|||:!!||||| PheGlnLeuAlaTrpGlyAlaValValValValMetIleIleIleThrValAspSe 1234169 : TTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTC : 1234113 217 : rLeuTyrMetLeuIleIleHisHisAlaSerGlyLeuPheAlaIleCys{Gl} > : 233 ||||||||||:!!|||||||||||||||||||||:!!||||||:!:|||{||} rLeuTyrMetIleIleIleHisHisAlaSerGlyMetPheAlaValCys{Gl}++ 1234112 : GTTGTACATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTGTGC{GG}gt. : 1234058 234 : >>> Target Intron 1 >>>> {y}TyrGlnIleAlaLysAlaThrGluCys : 242 198 bp {|}|||!:!:!!..!! ! ! ! ! ++{y}TyrArgValCysThrAspGlnIleMet 1234057 : ........................ag{C}TATCGAGTTTGTACTGATCAAATAATG : 1233837 243 : AsnAspIleAsnIleAsnGlu<-><->AsnGluLeuPheArgGlnCysValIleTh : 259 !.. |||!!. !|||||| !..!|||!!.!:!! ! ! !:!: ThrIleIleLysTyrAsnGlu***LeuAlaArgLeuLeuLysProThrAsnLeuCy 1233836 : ACAATAATAAAGTATAATGAATAATTAGCCCGATTATTGAAACCGACTAACTTGTG : 1233780 260 : rHisAsnLysAlaTyrLysPhePheGluIleMetAsnLysSerSerArgAsnAsnT : 278 ! ! ! ! !! !!:!|||!:!!!:|||:!:|||:!!||||||||||||!:!| sPheCysTyrIleSerArgPheTyrAspIleLeuAsnGluSerSerArgAsnSerT 1233779 : CTTTTGTTACATTTCCAGGTTTTACGATATTCTAAACGAGAGCAGTCGAAATAGCT : 1233723 279 : yrUnkLeuSerIleLeuLeuSerIleIleGlyIleSerIleThrAlaValGln > : 296 || :!!..!:!! !|||!:!!!:!!:|||||||||:!:|||||||||||| yrLeuIleGlnValGlyLeuAsnMetMetGlyIleSerValThrAlaValGln+- 1233722 : ACTTGATTCAGGTTGGATTGAACATGATGGGCATTAGCGTGACCGCTGTCCAGgc. : 1233667 297 : >>> Target Intron 2 >>>> IleValMetTyrLeuHisLysProGluGlu : 305 80 bp ! !|||:!: ||| !!!:!|||! !||| ++ThrValLeuThrLeuAspArgProAlaGlu 1233666 : ........................agACAGTCCTCACACTGGACAGGCCGGCAGAA : 1233562 306 : AlaPheArgIleSerLeuPheLeuMetAlaIleGlnPheHisLeuPheIleIleTh : 324 |||.!!||| !:!!:!!||||||:!:||| |||||||||||||||||||||!: AlaLeuArgCysAlaValPheLeuValAlaGluGlnPheHisLeuPheIleIleSe 1233561 : GCTCTTAGATGTGCTGTGTTCCTTGTAGCGGAGCAATTTCATTTGTTCATCATTAG : 1233505 325 : rLeuThrGlyGlnValIleAlaAspGlnSerSerLysLeuAlaSerAsn{Il} > : 341 !||| !!||||||..!:!!!.!|||!!.!!!!!!||||||:!!!.!:!!{||} rLeuProGlyGlnThrLeuValAspHisCysThrLysLeuSerLysAsp{Il}++ 1233504 : CTTACCTGGACAGACACTCGTGGATCATTGTACGAAACTATCGAAGGAT{AT}gt. : 1233450 342 : >>> Target Intron 3 >>>> {e}TyrCysThrThrTrpTyrArgMetPro : 350 70 bp {|}|||! !:!!|||||||||!:!:!:||| ++{e}TyrSerSerThrTrpTyrLysValPro 1233449 : ........................ag{A}TACTCTTCCACGTGGTATAAAGTACCG : 1233357 351 : ProAsnIleGlnLysIlePheHisIleIleGlnIleLysSerSerLysProCysLy : 369 !!!!..!!|||::!:!!.!!:!!! !!:||||||!:!:!! !||||||||| AlaLysPheGlnArgValIleTyrThrMetGlnIleArgAlaLeuLysProCysVa 1233356 : GCAAAATTTCAGCGAGTAATTTACACGATGCAAATAAGGGCTCTAAAGCCGTGTGT : 1233300 370 : sLeuThrAlaGlyGlyIleLeuGluLeuAsnIleGluAsnPheGlyIle >>>> : 386 |||||||||||||||:!:! !|||:!!|||!!:|||||||||!.!! ! lLeuThrAlaGlyGlyLeuTyrGluMetAsnMetGluAsnPheAlaAsn++ 1233299 : TTTGACTGCAGGTGGATTGTATGAAATGAACATGGAGAACTTTGCAAACgt..... : 1233247 387 : Target Intron 4 >>>> AlaLeuLysThrCysMetSerTyrPheThrIleP : 397 75 bp .!!!!!||||||||||||||||||||||||!!:. ++ThrPheLysThrCysMetSerTyrPheThrMetL 1233246 : ....................agaCATTCAAAACGTGCATGTCATACTTCACAATGC : 1233141 398 : heLeuSerLeuGlnAsp : 402 !.:!!||||||::!!!: euMetSerLeuArgGlu 1233140 : TGATGTCACTTAGAGAA : 1233124 vulgar: AfOr97P 142 402 . KQ414851.1 1234335 1233123 - 575 M 43 129 G 0 3 M 47 141 S 0 2 5 0 2 I 0 194 3 0 2 S 1 1 M 16 48 G 0 6 M 46 138 5 0 2 I 0 76 3 0 2 M 45 135 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 44 132 5 0 2 I 0 71 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233124 1234335 575 - . gene_id 1 ; sequence AfOr97P ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1234061 1234335 . - . KQ414851.1 exonerate:protein2genome:local exon 1234061 1234335 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234059 1234060 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233863 1234060 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233863 1233864 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233670 1233862 . - . KQ414851.1 exonerate:protein2genome:local exon 1233670 1233862 . - . insertions 6 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233668 1233669 . - . intron_id 2 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1233590 1233669 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1233590 1233591 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233453 1233589 . - . KQ414851.1 exonerate:protein2genome:local exon 1233453 1233589 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233451 1233452 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233383 1233452 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1233383 1233384 . - . intron_id 2 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233250 1233382 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233382 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 4 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 4 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 3 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233124 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233124 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233124 1234335 575 - . alignment_id 1 ; Query AfOr97P ; Align 1234336 143 129 ; Align 1234204 186 141 ; Align 1233862 234 48 ; Align 1233808 250 138 ; Align 1233590 296 135 ; Align 1233382 342 132 ; Align 1233175 386 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr97P Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 511 Query range: 8 -> 233 Target range: 1246729 -> 1243599 9 : TyrGlyLysAsnGlyLysTyrLysSerThrValPheAspIleSerTyrTyrLysTh : 27 !:! !|||!..! !!:!:!!:!!.!!:!!:!!||||||.!! !!|||||| :: PheGlnLysArgGluArgHisGluGlySerIlePheAspPheProTyrTyrGlySe 1246729 : TTTCAGAAAAGGGAAAGACACGAAGGTTCTATATTTGACTTTCCTTATTACggatc : 1246675 28 : rPheLysLysTyrLeuLysPheLeuGlyGlnTyrProAsnGlnSerArgTrpAsnL : 46 :||||||... ::: !|||||||||||||||||| !!||||||!:!! ...: rPheLysAsnAsnMetLeuPheLeuGlyGlnTyrProTyrGlnSerLysLeuThrG 1246674 : gtttaaaaataatatgctATTCTTGGGACAATATCCATATCAATCGAAATtgactg : 1246618 47 : ysGluPheAsnThrAsnValMetIleCysSerLeuIleSerPheLeuIleProGly : 64 :: |||||| ..!:!!|||:!!|||!!!! !! |||.!!:!!||| ! ! luIlePheAsnGluThrLeuMetValCysThrTyrThrSerLeuIleIleLeuGln 1246617 : aaatatttaatgaaacCCTGATGGTATGCACCTATACGAGTCTCATAATTTTACAG : 1246564 65 : >>>> Target Intron 1 >>>> LeuLeuGlnValTyrThrSerIleVal : 73 111 bp :!!:!!|||:!!!:! !:!!|||:!! ++ ++ValIleGlnMetPheGluAlaIleIle 1246563 : gt.........................agGTTATACAAATGTTCGAAGCGATAATT : 1246426 74 : GluLysAsnLeuAsnAlaLeuMetGluIleIleProIleValPheAlaThrIleSe : 92 ! !|||:!!:!!:!!||| !||||||! !:!!|||:!!:!! !!.!! !:!: ValLysAspIleAspAlaThrMetGluThrValProValIleValThrGluLeuVa 1246425 : GTAAAGGACATCGATGCAACGATGGAAACCGTACCTGTAATAGTCACCGAATTGgt : 1246369 93 : rCysAlaIleLysLeuLeuAsnHisArgIleAsnLysLysAsn >>>> Target : 107 |||...||||||||||||||||||! !||||||||| !!!. 12 lCysValIleLysLeuLeuAsnHisIleIleAsnLysGlyLys++ 1246368 : ttgtgtaataaaattgctGAATCATATCATCAATAAAGGAAAGgt........... : 1246322 108 : Intron 2 >>>> PheAspLysLeuPheAspPheMetSerGluGluTrpGluM : 120 70 bp ||||||||||||!:!|||.!!|||!.!:!!||||||!!:| ++PheAspLysLeuTyrAspIleMetLysLysGluTrpAspM 1246321 : ..............agTTCGACAAGTTGTACGATATCATGAAGAAAGAATGGGATA : 1245015 121 : etGluAsnAspArgAsnGlnThrCysIleLeuAspGluPheThrLysGlnGlyAsn : 138 || !!:! ! !.!.||| ! ||||||!!:|||.!!||||||!:!|||!:! etLeuSerLeuAspGluGlnGln---IleLeuGluGluIleThrLysArgGlySer 1245014 : TGTTAAGTCTCGACGAGCAGCAG---ATTCTCGAAGAAATCACTAAACGAGGAAGT : 1244964 139 : LysPheAlaGluIleTyrLys{A} >>>> Target Intron 3 >>>> {sn : 146 |||!!..!!.!.||||||!:!{!} 1077 bp {:! LysLeuThrAsnIleTyrArg{S}++ ++{er 1244963 : AAATTAACCAATATATACAGA{A}gt.........................ag{GT : 1243862 147 : }ValLeuLeuSerAlaLeuLeuLeuPheLeuLeuLeuProLeuPheProSerPheL : 165 }..!|||!!!! ! !! !:!!:!!|||:!!|||!!!||||||.!!||| !!.!.| }ThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleL 1243861 : }ACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATAT : 1243806 166 : euAspValValPheProLeuAsnGluThrArgGlnGlnLeuGlnIlePheLysMet : 183 |||||||||||! ||||||||||||||||||...!:!:!!::::::...|||::: euAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeu 1243805 : TGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattg : 1243752 184 : LysTyrPheIleLysGluAspGlnTyrPheTyrProIleTyrPheHisSerValTr : 202 :::|||.!..!! ! :::::: |||||| :::||| !!:!!!!!! !|| GlnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTr 1243751 : caataccTGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGCTG : 1243695 203 : pSerSerPheValIleIleMetIleThrValThrIleAspSerLeuTyrMetLeuI : 221 |!!!||||||:!!! !!!:|||:!!! !:!!|||||||||:!!||||||:!!:!!| pCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValValI 1243694 : GTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAA : 1243638 222 : leIleHisHisAlaSerGlyLeuPheAlaIleCysGly : 233 |||||||||||.!!!!!||||||||||||:!!|||||| leIleHisHisThrCysGlyLeuPheAlaValCysGly 1243637 : TCATTCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: AfOr97P 8 233 . KQ414851.1 1246729 1243599 - 511 M 56 168 5 0 2 I 0 107 3 0 2 M 42 126 5 0 2 I 0 1266 3 0 2 M 21 63 G 1 0 M 17 51 S 0 1 5 0 2 I 0 1073 3 0 2 S 1 2 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1246729 511 - . gene_id 2 ; sequence AfOr97P ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1246562 1246729 . - . KQ414851.1 exonerate:protein2genome:local exon 1246562 1246729 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1246560 1246561 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1246451 1246561 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1246451 1246452 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1246325 1246450 . - . KQ414851.1 exonerate:protein2genome:local exon 1246325 1246450 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1246323 1246324 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1245055 1246324 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1245055 1245056 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1244940 1245054 . - . KQ414851.1 exonerate:protein2genome:local exon 1244940 1245054 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local splice5 1244938 1244939 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243863 1244939 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1243863 1243864 . - . intron_id 2 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1243600 1243862 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243862 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1246729 511 - . alignment_id 2 ; Query AfOr97P ; Align 1246730 9 168 ; Align 1246451 65 126 ; Align 1245055 107 63 ; Align 1244992 129 51 ; Align 1243861 147 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr97P Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 325 Query range: 263 -> 402 Target range: 1243179 -> 1242521 264 : TyrLysPhePheGluIleMetAsnLysSerSerArgAsnAsnTyrUnkLeuSerIl : 282 !:!!..! !|||!!:! !!!:|||:!!! !!!!!!!!.. !||| !!!..!:! PheSerSerPheAspThrIleAsnGluIleThrSerThrCysTyrLeuPheGlnVa 1243179 : TTCAGCTCTTTCGATACCATAAACGAAATCACTAGCACATGTTACTTGTTTCAAGT : 1243125 283 : eLeuLeuSerIleIleGlyIleSerIleThrAlaValGln >>>> Target In : 296 ! !|||!:!!!:||||||||||||:!:|||:!!|||! ! 77 b lGlyLeuAsnMetIleGlyIleSerValThrSerValLeu++ 1243124 : CGGACTTAATATGATCGGTATTAGCGTGACGTCTGTTCTAgt.............. : 1243081 297 : tron 1 >>>> IleValMetTyrLeuHisLysProGluGluAlaPheArgIleS : 310 p ! !!!!: !!||| !!::!||||||||| ! !||||||: ++AlaPheIleAsnLeuAspArgProGluGluPheAlaArgIleA 1243080 : ...........agGCCTTTATAAATCTAGATCGGCCTGAAGAATTTGCCAGAATTG : 1242964 311 : erLeuPheLeuMetAlaIleGlnPheHisLeuPheIleIleThrLeuThrGlyGln : 328 !!! !||||||!!:||| |||.!!||||||!!.:!!|||!:!:!! !!|||||| laCysPheLeuIleAlaGlnGlnLeuHisLeuLeuValIleSerValProGlyGln 1242963 : CTTGTTTCCTTATAGCTCAGCAACTCCACTTGTTAGTCATTAGTGTACCAGGGCAG : 1242910 329 : ValIleAlaAspGlnSerSerLysLeuAlaSerAsn{Il} >>>> Target In : 341 :!!|||.!!||||||||||||||||||.!!! !:!!{||} 72 b IleIleThrAspGlnSerSerLysLeuThrIleAsp{Il}++ 1242909 : ATCATCACGGATCAAAGTTCAAAGTTGACCATTGAC{AT}gt.............. : 1242867 342 : tron 2 >>>> {e}TyrCysThrThrTrpTyrArgMetProProAsnIleGlnL : 355 p {|}||| !:!!! !||||||!:!! ||| ! ||||||| ++{e}TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnL 1242866 : ...........ag{A}TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAA : 1242757 356 : ysIlePheHisIleIleGlnIleLysSerSerLysProCysLysLeuThrAlaGly : 373 |||||.!!||||||:!!||||||!:!|||.!!|||||||||||||||..!|||||| ysIleLeuHisIleValGlnIleArgSerGlyLysProCysLysLeuValAlaGly 1242756 : AAATACTTCATATAGTACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGA : 1242703 374 : GlyIleLeuGluLeuAsnIleGluAsnPheGlyIle >>>> Target Intron : 386 |||:!!! !|||:!!|||||||||||||||||| ! 92 bp GlyLeuTyrGluMetAsnIleGluAsnPheGlySer++ 1242702 : GGATTATACGAAATGAACATTGAGAATTTTGGATCAgt.................. : 1242662 387 : 3 >>>> AlaLeuLysThrCysMetSerTyrPheThrIlePheLeuSerLeuGl : 401 ..!!!!|||||||||!!:||||||||||||!!:.!!||||||!!!:! ++ThrPheLysThrCysIleSerTyrPheThrMetLeuLeuSerPheLy 1242661 : .......agacTTTCAAAACCTGCATATCGTACTTTACGATGCTCTTATCATTCAA : 1242527 402 : nAsp : 402 !||| sAsp 1242526 : AGAC : 1242522 vulgar: AfOr97P 263 402 . KQ414851.1 1243179 1242521 - 325 M 32 96 5 0 2 I 0 73 3 0 2 M 45 135 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 44 132 5 0 2 I 0 88 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242522 1243179 325 - . gene_id 3 ; sequence AfOr97P ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1243084 1243179 . - . KQ414851.1 exonerate:protein2genome:local exon 1243084 1243179 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1243082 1243083 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243007 1243083 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1243007 1243008 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242870 1243006 . - . KQ414851.1 exonerate:protein2genome:local exon 1242870 1243006 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242868 1242869 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242798 1242869 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1242798 1242799 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242665 1242797 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242797 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 2 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242522 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242522 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242522 1243179 325 - . alignment_id 3 ; Query AfOr97P ; Align 1243180 264 96 ; Align 1243007 296 135 ; Align 1242797 342 132 ; Align 1242573 386 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr97P Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 234 Query range: 145 -> 233 Target range: 1229491 -> 1229224 146 : AsnValLeuLeuSerAlaLeuLeuLeuPheLeuLeuLeuProLeuPheProSerPh : 164 :!!!.!||||||! !|||:!!! !:!!|||||||||:!!||||||||| ! !! AspAlaLeuLeuPheAlaMetCysValPheLeuLeuValProLeuPheGlyProAl 1229491 : GATGCTTTACTCTTCGCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGC : 1229437 165 : eLeuAspValValPheProLeuAsnGluThrArgGlnGlnLeuGlnIlePheLysM : 183 !||||||:!!|||.!!|||! !||||||||||||! !!:!! !|||:!:|||!:!: aLeuAspIleValLeuProSerAsnGluThrArgProArgGlnGlnLeuPheArgV 1229436 : CCTGGACATCGTCCTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAG : 1229380 184 : etLysTyrPheIle<->LysGluAspGlnTyrPheTyrProIleTyrPheHisSer : 200 !:!!.|||.!.||| ! :!!! .!.||||||!:! !:!:|||.!!!!.! ! alAsnTyrIleIlePheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeu 1229379 : TTAACTATATAATTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTG : 1229326 201 : ValTrpSerSerPheValIleIleMetIleThrValThrIleAspSerLeuTyrMe : 219 !!|||!!!!!!.!!|||:!!:!!||| !! !:!!|||:!!|||||||||||||| PheTrpCysThrIleValLeuValMetAlaIleIleThrValAspSerLeuTyrMe 1229325 : TTTTGGTGTACAATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACAT : 1229269 220 : tLeuIleIleHisHisAlaSerGlyLeuPheAlaIleCysGly : 233 |:!!||||||:!!||||||||||||:!!||||||||||||||| tIleIleIleTyrHisAlaSerGlyMetPheAlaIleCysGly 1229268 : GATCATAATTTACCATGCCAGCGGAATGTTCGCTATATGCGGG : 1229225 vulgar: AfOr97P 145 233 . KQ414851.1 1229491 1229224 - 234 M 42 126 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229491 234 - . gene_id 4 ; sequence AfOr97P ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229225 1229491 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229491 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229491 234 - . alignment_id 4 ; Query AfOr97P ; Align 1229492 146 126 ; Align 1229363 188 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr97P Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 201 Query range: 146 -> 247 Target range: 1240085 -> 1239779 147 : ValLeuLeuSerAlaLeuLeuLeuPheLeuLeuLeuProLeuPheProSerPheLe : 165 ||||||!!!|||...|||...:::||||||:!!:!!|||:::|||||| ...|| ValLeuPheSerValLeuPheIlePheLeuValValProIlePheProProLeuLe 1240085 : GTTTTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcctcctcttct : 1240031 166 : uAspValValPheProLeuAsnGluThrArgGlnGlnLeuGlnIlePheLysMetL : 184 ||||:!!:!! |||||||||||||||||| !!:: :::|||||||||:::. uAspIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIlePheLysValA 1240030 : ggACATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatattcaaagtta : 1239974 185 : ysTyr<->PheIleLysGluAspGlnTyrPheTyrProIleTyrPheHisSerVal : 201 ..||| .!!||| ! ..!|||:!! ! ! !! !|||||||||! ! ! snTyrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPheHisLeuSer 1239973 : aTTACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTTCACTTGTCT : 1239920 202 : TrpSerSerPheValIleIleMetIleThrValThrIleAspSerLeuTyrMetLe : 220 |||!!!!!!.!!..!:!! !!: !..!:!!!:! !!!:! !:!!|||:!:|| TrpThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIleTyrValLe 1239919 : TGGACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGTCCT : 1239863 221 : uIleIleHisHisAlaSerGlyLeuPheAlaIleCysGlyTyrGlnIleAlaLysA : 239 |:!!|||||||||.!!|||||||||||||||:!:..!||| ... . uLeuIleHisHisThrSerGlyLeuPheAlaValAlaGly***IlePheLysHisT 1239862 : TCTTATTCATCATACCAGCGGTCTGTTTGCTGTGGCTGggtaaatattcaaacata : 1239806 240 : laThrGluCysAsnAspIleAsnIle : 247 !! !... |||::: |||||| hrCysAsnIleAsnGluGluAsnIle 1239805 : CCTGTAacataaacgaagaaaatata : 1239780 vulgar: AfOr97P 146 247 . KQ414851.1 1240085 1239779 - 201 M 39 117 G 0 3 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239780 1240085 201 - . gene_id 5 ; sequence AfOr97P ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239780 1240085 . - . KQ414851.1 exonerate:protein2genome:local exon 1239780 1240085 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239780 1240085 201 - . alignment_id 5 ; Query AfOr97P ; Align 1240086 147 117 ; Align 1239966 186 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr97P Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 170 Query range: 142 -> 233 Target range: 1224300 -> 1224024 143 : IleTyrLysAsnValLeuLeuSerAlaLeuLeuLeuPheLeuLeuLeuProLeuPh : 161 |||:::...::: !|||! !! !!.!||||||:!!!:!:!! !!!!||||||.! IlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLeuIl 1224300 : attttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGAT : 1224246 162 : eProSerPheLeuAspValValPheProLeuAsnGluThrArgGlnGlnLeuGlnI : 180 . ! !! !!|||||||||||| ||||||||||||||||||! !:: !! : eAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLeuL 1224245 : AAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTT : 1224189 181 : lePheLysMetLysTyr<->PheIleLysGluAspGlnTyrPheTyrProIleTyr : 197 !:.!! !:!:!..||| |||||| ! ||| !!:!!:!!|||||| !:!: !! euLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValAsn 1224188 : TGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAAT : 1224135 198 : PheHisSerValTrpSerSerPheValIleIleMetIleThrValThrIleAspSe : 216 |||||| ! ! ||| !.!! ! ! |||!!:! !:!!.!!:!:|||! PheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAspMe 1224134 : TTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATAT : 1224078 217 : rLeuTyrMetLeuIleIleHisHisAlaSerGlyLeuPheAlaIleCysGly : 233 !||||||!!: !|||||| !||| !!!!||||||||||||:!:|||||| tLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaValCysGly 1224077 : GTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: AfOr97P 142 233 . KQ414851.1 1224300 1224024 - 170 M 43 129 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224300 170 - . gene_id 6 ; sequence AfOr97P ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224300 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224300 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224300 170 - . alignment_id 6 ; Query AfOr97P ; Align 1224301 143 129 ; Align 1224169 186 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr97P Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 330 -> 385 Target range: 1222538 -> 1222373 331 : AlaAspGlnSerSerLysLeuAlaSerAsnIleTyrCysThrThrTrpTyrArgMe : 349 ::!..!|||!:!! ! !!:!!..!!!!:!!! !|||..!:!!! !||||||..!:! SerSerGlnAsnLeu***IleCysCysAspSerTyrAlaSerLysTrpTyrGluLe 1222538 : AGTAGCCAAAACTTATAGATTTGTTGCGACAGTTACGCTTCTAAATGGTACGAACT : 1222484 350 : tProProAsnIleGlnLysIlePheHisIleIleGlnIleLysSerSerLysProC : 368 :||| !!!. ||||||:!:.!!:!!! !!:|||!!:!:!|||! !::!|||| uProValLysGlyGlnLysLeuIleTyrThrMetGlnMetArgSerIleArgProC 1222483 : ACCGGTAAAAGGGCAAAAGTTGATTTACACGATGCAAATGAGGTCCATACGGCCAT : 1222427 369 : ysLysLeuThrAlaGlyGlyIleLeuGluLeuAsnIleGluAsnPheGlyIle : 385 ||! !|||||||||||||||:!:! !|||:!!|||||||||!:!||||||||| ysIleLeuThrAlaGlyGlyValHisGluMetAsnIleGluSerPheGlyIle 1222426 : GTATATTAACAGCAGGAGGAGTGCATGAGATGAACATCGAGAGTTTCGGAATA : 1222374 vulgar: AfOr97P 330 385 . KQ414851.1 1222538 1222373 - 132 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222374 1222538 132 - . gene_id 7 ; sequence AfOr97P ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1222374 1222538 . - . KQ414851.1 exonerate:protein2genome:local exon 1222374 1222538 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222374 1222538 132 - . alignment_id 7 ; Query AfOr97P ; Align 1222539 331 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr97P Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 341 -> 383 Target range: 1228545 -> 1228419 342 : TyrCysThrThrTrpTyrArgMetProProAsnIleGlnLysIlePheHisIleIl : 360 |||! !:!!|||||||||!:!:!: !! !!!!..!!|||::!:!!.!!:!!!!:!! TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 361 : eGlnIleLysSerSerLysProCysLysLeuThrAlaGlyGlyIleLeuGluLeuA : 379 :||||||!:!:!! !|||||||||! |||||||||||||||:!:! !|||:!!| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 380 : snIleGluAsnPhe : 383 ||!!:||||||||| snMetGluAsnPhe 1228433 : ACATGGAGAACTTT : 1228420 vulgar: AfOr97P 341 383 . KQ414851.1 1228545 1228419 - 130 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228420 1228545 130 - . gene_id 8 ; sequence AfOr97P ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228420 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228420 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228420 1228545 130 - . alignment_id 8 ; Query AfOr97P ; Align 1228546 342 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr97P Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 262 -> 341 Target range: 1239468 -> 1238684 263 : AlaTyrLysPhePheGluIleMetAsnLysSerSerArgAsnAsnTyrUnkLeuSe : 281 |||!:!!:!! !!:!.!.:!!:!!.!.||||||||| ! !!:!||| !!!.. AlaPheArgCysTyrAsnValLeuGlnLysSerSerValLeuSerTyrLeuPheGl 1239468 : GCTTTCAGGTGTTACAATGTTCTGCAGAAAAGCAGTGTGCTCAGTTACTTGTTTCA : 1239414 282 : rIleLeuLeuSerIleIleGlyIleSerIleThrAlaValGln >>>> Target : 296 !:!! !|||!:!|||:!:|||:!!|||:!::!!||||||||| 5 nValGlyLeuAsnIleValGlyLeuSerValSerAlaValGln++ 1239413 : AGTTGGATTAAACATAGTGGGCCTTAGTGTGTCAGCTGTTCAAgt........... : 1239367 297 : Intron 1 >>>> IleValMetTyrLeuHisLysProGluGluAlaPheArgI : 309 47 bp ! !||| ! !!:!! !! ! ||| !! !|||!!.|||! ++ThrValGlyAsnIleAspAspProThrValAlaLeuArgA 1239366 : ..............agACAGTGGGGAATATAGACGATCCGACAGTAGCTTTGAGAA : 1238783 310 : leSerLeuPheLeuMetAlaIleGlnPheHisLeuPheIleIleThrLeuThrGly : 327 !:!! ! !!! ! !|||! |||.!!|||||||||||||||!:!:!! !!||| snAlaThrValTrpGlyAlaLysGlnIleHisLeuPheIleIleSerIleProGly 1238782 : ACGCTACGGTCTGGGGGGCTAAGCAAATTCACCTGTTCATCATCAGTATACCTGGA : 1238729 328 : GlnValIleAlaAspGlnSerSerLysLeuAlaSerAsnIle : 341 ||||||:!! !|||!!.!!! !:!!|||:!!!:!:!!!!: GlnValLeuIleAspHisCysValGluLeuSerAsnAspMet 1238728 : CAGGTGCTTATAGATCATTGTGTGGAGCTGTCAAACGACATG : 1238685 vulgar: AfOr97P 262 341 . KQ414851.1 1239468 1238684 - 127 M 33 99 5 0 2 I 0 543 3 0 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1238685 1239468 127 - . gene_id 9 ; sequence AfOr97P ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1239370 1239468 . - . KQ414851.1 exonerate:protein2genome:local exon 1239370 1239468 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1239368 1239369 . - . intron_id 1 ; splice_site "gt" KQ414851.1 exonerate:protein2genome:local intron 1238823 1239369 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1238823 1238824 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1238685 1238822 . - . KQ414851.1 exonerate:protein2genome:local exon 1238685 1238822 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1238685 1239468 127 - . alignment_id 9 ; Query AfOr97P ; Align 1239469 263 99 ; Align 1238823 296 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr97P Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 292 -> 342 Target range: 1228764 -> 1228614 293 : AlaValGlnIleValMetTyrLeuHisLysProGluGluAlaPheArgIleSerLe : 311 :!! !!||||||:!!:!: !||| !!!:!|||...||||||.!!||| !|||:! SerPheGlnIleMetLeuAlaLeuAspArgProSerGluAlaIleArgTyrSerVa 1228764 : TCTTTCCAGATAATGCTCGCCCTGGATAGACCGAGCGAAGCTATTAGATATTCTGT : 1228710 312 : uPheLeuMetAlaIleGlnPheHisLeuPheIleIleThrLeuThrGlyGlnValI : 330 ! !!||| !.! |||||||||||||||||||||!:!||| !!||||||..!: lValLeuGlyGlyAlaGlnPheHisLeuPheIleIleSerLeuProGlyGlnThrL 1228709 : GGTTCTTGGAGGTGCGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACAC : 1228653 331 : leAlaAspGlnSerSerLysLeuAlaSerAsnIleTyr : 342 !!!.!|||!!.!!!!!!! !|||.!!!:!:!!!!:||| euValAspHisCysThrMetLeuThrAsnAspMetTyr 1228652 : TCGTGGATCATTGTACCATGCTAACGAACGATATGTAC : 1228615 vulgar: AfOr97P 292 342 . KQ414851.1 1228764 1228614 - 112 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228615 1228764 112 - . gene_id 10 ; sequence AfOr97P ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228615 1228764 . - . KQ414851.1 exonerate:protein2genome:local exon 1228615 1228764 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228615 1228764 112 - . alignment_id 10 ; Query AfOr97P ; Align 1228765 293 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr100 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 373 Query range: 139 -> 336 Target range: 1240085 -> 1238684 140 : ThrLeuLeuValAlaMetValIlePhePheSerValProLeuIlePheProIleLe : 158 ..!|||!!! ...::: ||||||... !||||||:::... |||:::|| ValLeuPheSerValLeuPheIlePheLeuValValProIlePheProProLeuLe 1240085 : GTTTTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcctcctcttct : 1240031 159 : uAspIleValTyrProLeuAsnGluThrArgProArgGlnGlnLeuTyrLysValA : 177 |||||||:!! ! |||||||||||||||||| !!||||||:::::::::||||||| uAspIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIlePheLysValA 1240030 : ggACATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatattcaaagtta : 1239974 178 : snTyrLeuIlePheAsnHisGluAspTyrTyrPheTyrValTyrPheGlnLeuVal : 195 |||||||||||.!!:!!...!!:!!: ! !.!. !..!||||||!!.||| ! snTyrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPheHisLeuSer 1239973 : aTTACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTTCACTTGTCT : 1239920 196 : TrpSerSerPheValCysValIleIleIleIleIlePheAspTrpLeuTyrIleLe : 214 |||!!!!!!.!!..! !! !||| !:!::!!! !! !!:! !:!!|||:!!|| TrpThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIleTyrValLe 1239919 : TGGACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGTCCT : 1239863 215 : uIleIleHisHisAsnSerGlyMetPheThrValCys{Gl} >>>> Target I : 227 |:!!|||||||||!.!||||||:!!|||.!!|||..!{||} 175 uLeuIleHisHisThrSerGlyLeuPheAlaValAla{Gl}++ 1239862 : TCTTATTCATCATACCAGCGGTCTGTTTGCTGTGGCT{Gg}gt............. : 1239820 228 : ntron 1 >>>> {y}TyrGlnIleGlnLysIlePheThrGluGluAlaPheSer : 240 bp {|}!! ! ...!!. !!!.! !! !! ! ! !! ! +-{y}***IleGlnSerAsnAspLeuIleValGlyLysAsnLeu 1239819 : ............aa{A}TAGATACAGAGTAATGATTTAATTGTGGGAAAGAATTTA : 1239610 241 : AsnIleArgIleTyrGluGlnPheLysAsnCysLeuIleValHisAsnGluAlaIl : 259 .!. ...|||||||||:::||||||...|||:!! !..!|||||||||||||| GluAspGluIleTyrGluLysPheLysArgCysValAspThrHisAsnGluAlaIl 1239609 : GAAgacgaaatttacgaaaaattcaaacgatgCGTCGACACACACAACGAAGCTAT : 1239553 260 : e{Gl} >>>> Target Intron 2 >>>> {n}PhePheAspIleLeuAspG : 267 |{:!} 88 bp {!}! !!:!:!!:!!|||.!.: e{Gl}++ ++{u}CysTyrAsnValLeuGlnL 1239552 : T{GA}gt.........................ag{G}TGTTACAATGTTCTGCAGA : 1239441 268 : luSerSerArgAsnThrTyrPhePheLeuValGlySerAsnIleIleGlyThrSer : 285 !!|||||| ! !!:!|||!!.|||! !||||||! !||||||:!:||| !||| ysSerSerValLeuSerTyrLeuPheGlnValGlyLeuAsnIleValGlyLeuSer 1239440 : AAAGCAGTGTGCTCAGTTACTTGTTTCAAGTTGGATTAAACATAGTGGGCCTTAGT : 1239387 286 : MetSerAlaValGln >>>> Target Intron 3 >>>> IleValLeuAsn : 294 :!!|||||||||||| 547 bp ! !||| !||| ValSerAlaValGln++ ++ThrValGlyAsn 1239386 : GTGTCAGCTGTTCAAgt.........................agACAGTGGGGAAT : 1238813 295 : LeuAspLysLeuGluValAlaIleLysSerThrValPheLeuIleAlaAlaGlnPh : 313 :!!||| ! ! ! !||||||:!:!:!!:!.!!..! !!! ! ||| !|||.! IleAspAspProThrValAlaLeuArgAsnAlaThrValTrpGlyAlaLysGlnIl 1238812 : ATAGACGATCCGACAGTAGCTTTGAGAAACGCTACGGTCTGGGGGGCTAAGCAAAT : 1238756 314 : eHisLeuPheIleLeuSerIleProGlyGlnIleLeuLeuAsnHisTyrSerAsnL : 332 !||||||||||||:!!|||||||||||||||:!:|||:!!:!!|||! ! !.!.| eHisLeuPheIleIleSerIleProGlyGlnValLeuIleAspHisCysValGluL 1238755 : TCACCTGTTCATCATCAGTATACCTGGACAGGTGCTTATAGATCATTGTGTGGAGC : 1238699 333 : euThrAsnAsnIle : 336 ||:!!|||:!!!!: euSerAsnAspMet 1238698 : TGTCAAACGACATG : 1238685 vulgar: AfOr100 139 336 . KQ414851.1 1240085 1238684 - 373 M 87 261 S 0 2 5 0 2 I 0 171 3 0 2 S 1 1 M 32 96 S 0 2 5 0 2 I 0 84 3 0 2 S 1 1 M 30 90 5 0 2 I 0 543 3 0 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1238685 1240085 373 - . gene_id 1 ; sequence AfOr100 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1239823 1240085 . - . KQ414851.1 exonerate:protein2genome:local exon 1239823 1240085 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1239821 1239822 . - . intron_id 1 ; splice_site "gt" KQ414851.1 exonerate:protein2genome:local intron 1239648 1239822 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1239648 1239649 . - . intron_id 0 ; splice_site "AA" KQ414851.1 exonerate:protein2genome:local cds 1239549 1239647 . - . KQ414851.1 exonerate:protein2genome:local exon 1239549 1239647 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1239547 1239548 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1239461 1239548 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1239461 1239462 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1239370 1239460 . - . KQ414851.1 exonerate:protein2genome:local exon 1239370 1239460 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1239368 1239369 . - . intron_id 3 ; splice_site "gt" KQ414851.1 exonerate:protein2genome:local intron 1238823 1239369 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1238823 1238824 . - . intron_id 2 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1238685 1238822 . - . KQ414851.1 exonerate:protein2genome:local exon 1238685 1238822 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1238685 1240085 373 - . alignment_id 1 ; Query AfOr100 ; Align 1240086 140 261 ; Align 1239647 228 96 ; Align 1239460 261 90 ; Align 1238823 291 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr100 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 358 Query range: 259 -> 396 Target range: 1228927 -> 1228290 260 : GlnPhePheAspIleLeuAspGluSerSerArgAsnThrTyrPhePheLeuValGl : 278 ::!|||!:!|||||||||:!!|||||||||||||||!:!|||!!..!!! !||||| ArgPheTyrAspIleLeuAsnGluSerSerArgAsnSerTyrLeuLeuGlnValGl 1228927 : AGGTTTTACGATATTCTAAACGAGAGCAGTCGAAACAGCTACTTGCTTCAGGTTGG : 1228873 279 : ySerAsnIleIleGlyThrSerMetSerAlaValGln >>>> Target Intro : 291 |! !!:!!!:!!:.!!! !|||:!!!!!||||||||| 79 bp yLeuSerMetMetSerIleSerValThrAlaValGln+- 1228872 : ATTGAGCATGATGAGCATCAGCGTGACTGCTGTGCAGgc................. : 1228832 292 : n 1 >>>> IleValLeuAsnLeuAspLysLeuGluValAlaIleLysSerThrV : 306 |||:!!||| !||||||!:!! !...! !||||||!:!! !:!!| ++IleMetLeuAlaLeuAspArgProSerGluAlaIleArgTyrSerV 1228831 : ........agATAATGCTCGCCCTGGATAGACCGAGCGAAGCTATTAGATATTCTG : 1228710 307 : alPheLeuIleAlaAlaGlnPheHisLeuPheIleLeuSerIleProGlyGlnIle : 324 || !!||| !!.!|||||||||||||||||||||:!!|||:!!|||||||||! ! alValLeuGlyGlyAlaGlnPheHisLeuPheIleIleSerLeuProGlyGlnThr 1228709 : TGGTTCTTGGAGGTGCGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACA : 1228656 325 : LeuLeuAsnHisTyrSerAsnLeuThrAsnAsn{Il} >>>> Target Intro : 336 |||:!!:!!|||! !!!!! |||||||||:!!{||} 72 bp LeuValAspHisCysThrMetLeuThrAsnAsp{Il}++ 1228655 : CTCGTGGATCATTGTACCATGCTAACGAACGAT{AT}gt................. : 1228616 337 : n 2 >>>> {e}PheMetSerAlaTrpTyrAsnMetProIleGluValGlnLysM : 351 {|}!:! |||.!!||||||!!.:!: !! !:!! !!|||::!: ++{e}TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgV 1228615 : ........ag{A}TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAG : 1228503 352 : etPheTyrValMetGlnIleArgCysAsnLysProCysSerLeuThrAlaCysGly : 369 !:.!!|||:!!||||||||||||..! |||||||||! !||||||||| !!||| alIleTyrMetMetGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGly 1228502 : TAATTTACATGATGCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGA : 1228449 370 : LeuTyrGluMetAsnMetGluAsnPheGlyThr >>>> Target Intron 3 : 381 |||||||||||||||||||||||||||!.!!.! 75 bp LeuTyrGluMetAsnMetGluAsnPheAlaAsn++ 1228448 : TTGTACGAAATGAACATGGAGAACTTTGCAAACgt..................... : 1228411 382 : >>>> AlaLeuLysThrCysMetSerTyrIleThrMetIleLeuSerLeuLys : 396 .!!!!!||||||||||||||||||.!!||||||:!::!!|||!!!!:! ++ThrPheLysThrCysMetSerTyrPheThrMetLeuMetSerPheArg 1228410 : ....agACATTCAAAACGTGCATGTCGTACTTCACAATGCTGATGTCATTTAGG : 1228291 vulgar: AfOr100 259 396 . KQ414851.1 1228927 1228290 - 358 M 31 93 5 0 2 I 0 75 3 0 2 M 45 135 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 44 132 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228291 1228927 358 - . gene_id 2 ; sequence AfOr100 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1228835 1228927 . - . KQ414851.1 exonerate:protein2genome:local exon 1228835 1228927 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228833 1228834 . - . intron_id 1 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1228756 1228834 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1228756 1228757 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228619 1228755 . - . KQ414851.1 exonerate:protein2genome:local exon 1228619 1228755 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228617 1228618 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1228547 1228618 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1228547 1228548 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228414 1228546 . - . KQ414851.1 exonerate:protein2genome:local exon 1228414 1228546 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228412 1228413 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1228339 1228413 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1228339 1228340 . - . intron_id 2 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228291 1228338 . - . KQ414851.1 exonerate:protein2genome:local exon 1228291 1228338 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228291 1228927 358 - . alignment_id 2 ; Query AfOr100 ; Align 1228928 260 93 ; Align 1228756 291 135 ; Align 1228546 337 132 ; Align 1228339 381 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr100 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 310 Query range: 135 -> 227 Target range: 1234335 -> 1234059 136 : IleTyrArgAsnThrLeuLeuValAlaMetValIlePhePheSerValProLeuIl : 154 .!!!:! !:!!||||||||| ! !||||||:!!|||.!. !|||||||||:! PhePheSerAspThrLeuLeuSerPheMetValValPheLeuLeuValProLeuVa 1234335 : TTCTTCTCAGATACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGT : 1234281 155 : ePheProIleLeuAspIleValTyrProLeuAsnGluThrArgProArgGlnGlnL : 173 !||||||.!!||||||:!!||| !|||||||||||||||||||||||||||||| lPheProPheLeuAspValValLeuProLeuAsnGluThrArgProArgGlnGlnG 1234280 : TTTTCCATTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAG : 1234224 174 : euTyrLysValAsnTyrLeuIlePheAsnHisGluAspTyrTyrPheTyrValTyr : 191 !!:!!:!|||||||||||| !|||:!!.!.! !||||||!:!||| !|||||| lyPheArgValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyr 1234223 : GATTCAGAGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTAC : 1234170 192 : PheGlnLeuValTrpSerSerPheValCysValIleIleIleIleIlePheAspTr : 210 |||||||||!.!|||.!!:!! !!||| !|||!!:|||||||||! ! ! |||! PheGlnLeuAlaTrpGlyAlaValValValValMetIleIleIleThrValAspSe 1234169 : TTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTC : 1234113 211 : pLeuTyrIleLeuIleIleHisHisAsnSerGlyMetPheThrValCysGly : 227 !||||||!!::!!|||||||||||| !||||||||||||.!!||||||||| rLeuTyrMetIleIleIleHisHisAlaSerGlyMetPheAlaValCysGly 1234112 : GTTGTACATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTGTGCGGG : 1234060 vulgar: AfOr100 135 227 . KQ414851.1 1234335 1234059 - 310 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234335 310 - . gene_id 3 ; sequence AfOr100 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234335 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234335 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234335 310 - . alignment_id 3 ; Query AfOr100 ; Align 1234336 136 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr100 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 288 Query range: 138 -> 227 Target range: 1229491 -> 1229224 139 : AsnThrLeuLeuValAlaMetValIlePhePheSerValProLeuIlePheProIl : 157 :!!.!!|||||| !!|||||| !:!!|||!!. !|||||||||.!! !||| AspAlaLeuLeuPheAlaMetCysValPheLeuLeuValProLeuPheGlyProAl 1229491 : GATGCTTTACTCTTCGCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGC : 1229437 158 : eLeuAspIleValTyrProLeuAsnGluThrArgProArgGlnGlnLeuTyrLysV : 176 !|||||||||||| !|||! !|||||||||||||||||||||||||||!:!!:!| aLeuAspIleValLeuProSerAsnGluThrArgProArgGlnGlnLeuPheArgV 1229436 : CCTGGACATCGTCCTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAG : 1229380 177 : alAsnTyrLeuIlePheAsnHisGluAspTyrTyrPheTyrValTyrPheGlnLeu : 194 ||||||||:!!||||||:!!!!.! !||||||!:!||||||||||||.!!|||||| alAsnTyrIleIlePheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeu 1229379 : TTAACTATATAATTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTG : 1229326 195 : ValTrpSerSerPheValCysValIleIleIleIleIlePheAspTrpLeuTyrIl : 213 !!|||!!!!!!.!!||| !|||!!: !||||||! ! ! |||! ||||||!! PheTrpCysThrIleValLeuValMetAlaIleIleThrValAspSerLeuTyrMe 1229325 : TTTTGGTGTACAATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACAT : 1229269 214 : eLeuIleIleHisHisAsnSerGlyMetPheThrValCysGly : 227 ::!!||||||:!!||| !||||||||||||.!!:!!|||||| tIleIleIleTyrHisAlaSerGlyMetPheAlaIleCysGly 1229268 : GATCATAATTTACCATGCCAGCGGAATGTTCGCTATATGCGGG : 1229225 vulgar: AfOr100 138 227 . KQ414851.1 1229491 1229224 - 288 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229491 288 - . gene_id 4 ; sequence AfOr100 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229225 1229491 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229491 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229491 288 - . alignment_id 4 ; Query AfOr100 ; Align 1229492 139 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr100 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 266 Query range: 292 -> 396 Target range: 1243000 -> 1242524 293 : LeuAsnLeuAspLysLeuGluValAlaIleLysSerThrValPheLeuIleAlaAl : 311 :!!|||||||||::!! !|||! ! ! !!:!! !.!! !|||||||||||| IleAsnLeuAspArgProGluGluPheAlaArgIleAlaCysPheLeuIleAlaGl 1243000 : ATAAATCTAGATCGGCCTGAAGAATTTGCCAGAATTGCTTGTTTCCTTATAGCTCA : 1242946 312 : aGlnPheHisLeuPheIleLeuSerIleProGlyGlnIleLeuLeuAsnHisTyrS : 330 !|||.!!||||||!!.:!!:!!|||:!!||||||||||||:!! !:!!!!. !| nGlnLeuHisLeuLeuValIleSerValProGlyGlnIleIleThrAspGlnSerS 1242945 : GCAACTCCACTTGTTAGTCATTAGTGTACCAGGGCAGATCATCACGGATCAAAGTT : 1242889 331 : erAsnLeuThrAsnAsn{Il} >>>> Target Intron 1 >>>> {e}Phe : 337 ||!!.||||||! !:!!{||} 72 bp {|}!:! erLysLeuThrIleAsp{Il}++ ++{e}Tyr 1242888 : CAAAGTTGACCATTGAC{AT}gt.........................ag{A}TAT : 1242796 338 : MetSerAlaTrpTyrAsnMetProIleGluValGlnLysMetPheTyrValMetGl : 356 ! ||| !||||||.!.! |||:!: !:!!||||||!!:.!!:!!:!!:!:|| AsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIleValGl 1242795 : AACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATATAGTACA : 1242739 357 : nIleArgCysAsnLysProCysSerLeuThrAlaCysGlyLeuTyrGluMetAsnM : 375 |||||||! !..!|||||||||!.!|||..!||| ! ||||||||||||||||||! nIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluMetAsnI 1242738 : AATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAATGAACA : 1242682 376 : etGluAsnPheGlyThr >>>> Target Intron 2 >>>> AlaLeuLysT : 384 !:||||||||||||:!! 92 bp ..!!!!|||| leGluAsnPheGlySer++ ++ThrPheLysT 1242681 : TTGAGAATTTTGGATCAgt.........................agacTTTCAAAA : 1242563 385 : hrCysMetSerTyrIleThrMetIleLeuSerLeuLys : 396 |||||!!:||||||.!!||||||:!!||||||!!!||| hrCysIleSerTyrPheThrMetLeuLeuSerPheLys 1242562 : CCTGCATATCGTACTTTACGATGCTCTTATCATTCAAA : 1242525 vulgar: AfOr100 292 396 . KQ414851.1 1243000 1242524 - 266 M 43 129 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 44 132 5 0 2 I 0 88 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242525 1243000 266 - . gene_id 5 ; sequence AfOr100 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1242870 1243000 . - . KQ414851.1 exonerate:protein2genome:local exon 1242870 1243000 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242868 1242869 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242798 1242869 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1242798 1242799 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242665 1242797 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242797 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 1 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242525 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242525 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242525 1243000 266 - . alignment_id 5 ; Query AfOr100 ; Align 1243001 293 129 ; Align 1242797 337 132 ; Align 1242573 381 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr100 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 251 Query range: 287 -> 396 Target range: 1233598 -> 1233126 288 : AlaValGlnIleValLeuAsnLeuAspLysLeuGluValAlaIleLysSerThrVa : 306 :!! !!|||! !||||||!..||||||!:!! !! !! !|||:!!!:!!!!.!!|| SerPheGlnThrValLeuThrLeuAspArgProAlaGluAlaLeuArgCysAlaVa 1233598 : TCCTTCCAGACAGTCCTCACACTGGACAGGCCGGCAGAAGCTCTTAGATGTGCTGT : 1233544 307 : lPheLeuIleAlaAlaGlnPheHisLeuPheIleLeuSerIleProGlyGlnIleL : 325 |||||||:!!|||! !||||||||||||||||||:!!|||:!!|||||||||! !| lPheLeuValAlaGluGlnPheHisLeuPheIleIleSerLeuProGlyGlnThrL 1233543 : GTTCCTTGTAGCGGAGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACAC : 1233487 326 : euLeuAsnHisTyrSerAsnLeuThrAsnAsnIlePheMetSerAla{T} >>>> : 341 ||:!!:!!|||! !!!!!!.|||:!!!!.:!!!!:!:!:!:! ! !{ } euValAspHisCysThrLysLeuSerLysAspMetTyrVal******{A}++ 1233486 : TCGTGGATCATTGTACGAAACTATCGAAGGATATGTACGTTTAATAA{C}gt.... : 1233436 342 : Target Intron 1 >>>> {rp}TyrAsnMetProIleGluValGlnLysMe : 351 70 bp {!!}|||!!.:!:||| !:!! !!|||::!:! --{rg}TyrLysValProAlaLysPheGlnArgVa 1233435 : .....................gt{GG}TATAAAGTACCGGCAAAATTTCAGCGAGT : 1233339 352 : tPheTyrValMetGlnIleArgCysAsnLysProCysSerLeuThrAlaCysGlyL : 370 :.!!|||..!||||||||||||..! ||||||||| !||||||||| !!|||| lIleTyrThrMetGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyL 1233338 : AATTTACACGATGCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGAT : 1233282 371 : euTyrGluMetAsnMetGluAsnPheGlyThr >>>> Target Intron 2 > : 381 ||||||||||||||||||||||||||!.!!.! 75 bp euTyrGluMetAsnMetGluAsnPheAlaAsn++ 1233281 : TGTATGAAATGAACATGGAGAACTTTGCAAACgt...................... : 1233247 382 : >>> AlaLeuLysThrCysMetSerTyrIleThrMetIleLeuSerLeuLys : 396 .!!!!!||||||||||||||||||.!!||||||:!::!!||||||!:! ++ThrPheLysThrCysMetSerTyrPheThrMetLeuMetSerLeuArg 1233246 : ...agaCATTCAAAACGTGCATGTCATACTTCACAATGCTGATGTCACTTAGA : 1233127 vulgar: AfOr100 287 396 . KQ414851.1 1233598 1233126 - 251 M 53 159 S 0 1 5 0 2 I 0 66 3 0 2 S 1 2 M 39 117 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233127 1233598 251 - . gene_id 6 ; sequence AfOr100 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233439 1233598 . - . KQ414851.1 exonerate:protein2genome:local exon 1233439 1233598 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233437 1233438 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233369 1233438 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233369 1233370 . - . intron_id 0 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local cds 1233250 1233368 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233368 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 1 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233127 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233127 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233127 1233598 251 - . alignment_id 6 ; Query AfOr100 ; Align 1233599 288 159 ; Align 1233367 342 117 ; Align 1233175 381 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr100 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 214 Query range: 135 -> 227 Target range: 1224300 -> 1224024 136 : IleTyrArgAsnThrLeuLeuValAlaMetValIlePhePheSerValProLeuIl : 154 |||::: ::::!!|||! !:!!!.!:!!:!!:!!!:!.!.||| !!|||||||| IlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLeuIl 1224300 : attttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGAT : 1224246 155 : ePheProIleLeuAspIleValTyrProLeuAsnGluThrArgProArgGlnGlnL : 173 | !|||:!!||||||:!!||| ||||||||||||||||||||||||::!! | eAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLeuL 1224245 : AAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTT : 1224189 174 : euTyrLysValAsnTyrLeuIlePheAsnHisGluAspTyrTyrPheTyrValTyr : 191 || ! !|||!:!|||:!!.!!.!.:!!.!. ! !!::!!!:!!:! !||| !! euLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValAsn 1224188 : TGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAAT : 1224135 192 : PheGlnLeuValTrpSerSerPheValCysValIleIleIleIleIlePheAspTr : 210 |||!!.||| ! ||| !.!! !|||! !!!:!!:|||||| ! ! ||| PheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAspMe 1224134 : TTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATAT : 1224078 211 : pLeuTyrIleLeuIleIleHisHisAsnSerGlyMetPheThrValCysGly : 227 !||||||||| !|||||| !||| !!!!|||:!!|||.!!||||||||| tLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaValCysGly 1224077 : GTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: AfOr100 135 227 . KQ414851.1 1224300 1224024 - 214 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224300 214 - . gene_id 7 ; sequence AfOr100 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224300 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224300 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224300 214 - . alignment_id 7 ; Query AfOr100 ; Align 1224301 136 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr100 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 204 Query range: 138 -> 227 Target range: 1243863 -> 1243599 139 : AsnThrLeuLeuValAlaMetValIlePhePheSerValProLeuIlePheProIl : 157 ..!||||||!!! ! ! !:!!|||||| ! ! ! !!||||||||| ||||| GlyThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIl 1243863 : GGTACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAAT : 1243809 158 : eLeuAspIleValTyrProLeuAsnGluThrArgProArgGlnGlnLeuTyrLysV : 176 |||||||:!!|||! |||||||||||||||||| !!||| !:::::: |||: eLeuAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysL 1243808 : ATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaat : 1243752 177 : alAsnTyrLeuIlePheAsnHisGluAspTyrTyrPheTyrValTyrPheGlnLeu : 194 ::...|||||| |||:!! ||| :::::: :::||| !! ! ! euGlnTyrLeu---PheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThr 1243751 : tgcaataccTG---TTCGACAtggagaagaatttttattcattatacGTCTACACT : 1243701 195 : ValTrpSerSerPheValCysValIleIleIleIleIlePheAspTrpLeuTyrIl : 213 ! !|||!!!||||||:!! !:!!!!::!!||||||! !.!.||| !||||||:! GlyTrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrVa 1243700 : GGCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGT : 1243644 214 : eLeuIleIleHisHisAsnSerGlyMetPheThrValCysGly : 227 ::!!||||||||||||!..!!!|||:!:|||.!!||||||||| lValIleIleHisHisThrCysGlyLeuPheAlaValCysGly 1243643 : GGTAATCATTCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: AfOr100 138 227 . KQ414851.1 1243863 1243599 - 204 M 41 123 G 1 0 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243863 204 - . gene_id 8 ; sequence AfOr100 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243863 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243863 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243863 204 - . alignment_id 8 ; Query AfOr100 ; Align 1243864 139 123 ; Align 1243741 181 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr100 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 289 -> 334 Target range: 1222717 -> 1222582 290 : GlnIleValLeuAsnLeuAspLysLeuGluValAlaIleLysSerThrValPheLe : 308 ||| !:!!:!!|||:!!|||::!! !!!:! ! !|||!:! !.!!:!!|||:! GlnCysIleMetAsnIleAspArgProAspGluLeuIleArgLeuAlaMetPheVa 1222717 : CAGTGCATTATGAACATCGACCGACCTGACGAACTCATCAGGCTTGCGATGTTTGT : 1222663 309 : uIleAlaAlaGlnPheHisLeuPheIleLeuSerIleProGlyGlnIleLeuLeuA : 327 !:!!||| :::|||||||||...|||||||||:!!|||||||||!!:||||||: lValAlaGlnLysPheHisLeuLeuIleLeuSerLeuProGlyGlnMetLeuLeuA 1222662 : CGTAGctcagaaatttcatttgctcATCCTTAGTTTACCTGGGCAAATGTTGTTAG : 1222606 328 : snHisTyrSerAsnLeuThrAsn : 334 !!||| !! !...|||.!!:!! spHisSerLeuGlyLeuAlaAsp 1222605 : ATCATAGTTTAGGATTGGCCGAT : 1222583 vulgar: AfOr100 289 334 . KQ414851.1 1222717 1222582 - 109 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222583 1222717 109 - . gene_id 9 ; sequence AfOr100 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1222583 1222717 . - . KQ414851.1 exonerate:protein2genome:local exon 1222583 1222717 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222583 1222717 109 - . alignment_id 9 ; Query AfOr100 ; Align 1222718 290 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 1325 Query range: 0 -> 395 Target range: 1692073 -> 1696263 1 : MetArgProThrGlySerArgAspIleSerIleIleTrpThrSerPheLeuMetLy : 19 |||!.! !..! !|||!:!||||||||||||:!!|||:!!! !||||||||||| MetHisLeuValGlnSerLysAspIleSerIleValTrpSerPhePheLeuMetLy 1692074 : ATGCATTTAGTGCAGAGTAAAGATATCTCGATCGTTTGGTCGTTCTTTTTGATGAA : 1692128 20 : sIleValGlyLeuTrpLeuAlaAlaAspArgCysGluGlnArgArgArgAspPheA : 38 ||||||||||||||||||||||||||||..!..!|||||||||||||||:!!|||| sIleValGlyLeuTrpLeuAlaAlaAspGluAlaGluGlnArgArgArgAsnPheA 1692129 : AATCGTAGGTCTGTGGCTAGCCGCCGACGAGGCTGAACAACGTCGGAGAAATTTCG : 1692185 39 : laLeuIleTyrThrValGlyAlaLeuPheIleIleValCysIleGlyPheArgAsp : 56 ||||||||||||||:!!..!|||:!!|||||| ! !||||||!.!.!.|||||| laLeuIleTyrThrLeuAsnAlaIlePheIleAlaSerCysIleAlaMetArgAsp 1692186 : CGCTGATTTACACGCTGAACGCGATTTTTATCGCTTCGTGTATAGCAATGAGAGAT : 1692239 57 : IleTyrPheThrTrpGlyAsnPheSer >>>> Target Intron 1 >>>> : 66 ||||||!:!:!!||||||||| ! !:! 1732 bp IleTyrTyrSerTrpGlyAsnValAsn++ ++ 1692240 : ATATACTATTCCTGGGGAAACGTGAACgt.........................ag : 1693999 67 : AspSerValTyrIleSerCysAsnAsnLeuTyrLeuMetIleValValLeuLysVa : 84 |||!!!:!!|||:!!.!!||||||! !||||||||| !|||||| !!!!!|||:! AspCysIleTyrValGlyCysAsnIleLeuTyrLeuAlaIleValPhePheLysIl 1694000 : GACTGCATTTACGTCGGGTGCAACATTTTATACCTAGCGATCGTTTTCTTCAAGAT : 1694055 85 : lSerValLeuTyrAlaHisLysMetGluPhePheAsnLeuValThrPheThrArgL : 103 ! !||||||||| !|||!:!!!:||||||!:!...|||:!!! !||||||!:!: eLeuValLeuTyrLysHisArgIleGluPheTyrGlyLeuIleArgPheThrGlnG 1694056 : CCTCGTTTTGTACAAGCACAGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAG : 1694112 104 : ysAsnPheTrpArgProTyrArgAspProGluGluLysLeuIleLeuAlaGluCys : 121 !!!!.||||||!.! ! !! !:!! !!..!|||||||||||||||:!!|||||| luLysPheTrpHisPheAspTyrAsnSerArgGluLysLeuIleLeuSerGluCys 1694113 : AGAAATTCTGGCATTTCGACTATAATTCACGGGAGAAGTTAATTTTATCCGAGTGC : 1694166 122 : LysArgIleCysThrIlePheValValValIleSerPheCysAlaGlnGlyThrCy : 140 |||!:!|||||||||:!!|||:!!|||!.!.!!|||||||||.!!||||||||||| LysLysIleCysThrValPheIleValAlaPheSerPheCysThrGlnGlyThrCy 1694167 : AAGAAGATATGTACCGTTTTCATCGTTGCCTTCAGCTTCTGTACTCAGGGCACGTG : 1694223 141 : sThrGlyTyrMetValThrProIleIle{A} >>>> Target Intron 2 >> : 150 |.!!||||||:!:||||||||||||:!!{|} 100 bp sAlaGlyTyrValValThrProIleLeu{A}++ 1694224 : TGCTGGTTACGTAGTGACACCTATTTTA{g}gt....................... : 1694256 151 : >> {la}AsnIleGlyLysAsnGluSerAsnArgGluLeuProPheAsnLeuTrp : 166 {||}|||:!!|||||||||:!!|||.!.||| !||||||||||||:!!||| ++{la}AsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTrp 1694257 : ..ag{CA}AATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTGG : 1694401 167 : ValAspPheProValGlyLeuSerProTyrPheGluIleLeuPheThrIleGln : 185 ||||||||||||..!|||||||||||||||!:!|||:!!||||||! !|||||| ValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGln++ 1694402 : GTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGgt : 1694458 186 : >>>> Target Intron 3 >>>> IleLeuCysValTyrHisValGlyValCy : 194 409 bp ! !|||||||||||||||||||||:!!|| ++ThrLeuCysValTyrHisValGlyIleCy 1694459 : .........................agACACTTTGCGTGTACCATGTCGGTATATG : 1694894 195 : sTyrIleCysPheAspAsnLeuLeuCysIleValAsnLeuHisValAlaGlyGlnP : 213 ||||!!:||||||||||||:!!||| !!:!!:!!||||||||||||||| !|||| sTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGlnP 1694895 : TTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAAT : 1694951 214 : heArgIleLeuGlnHisArgLeuArgSerLeuSerSerAlaGluProGlyAspArg : 231 ||||||||||||||:!!|||!!!! !!:!||||||!:!!.! ! ! !:! heArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGlu---LysGln 1694952 : TTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAG---AAGCAA : 1695002 232 : ArgAspAlaArgLys{Le} >>>> Target Intron 4 >>>> {u}TyrAl : 239 ! !|||!.!|||:::{!!} 33 bp {!}||| ThrAspGlyArgGlu{Ph}+- ++{e}TyrLe 1695003 : ACAGACGGTcgagaa{tt}gg.........................ag{T}TACTT : 1695059 240 : aLysLeuLysSerCysValLeuHisHisGlnAlaLeuThrLysTyrCysLysGlnL : 258 !:!!|||||||||||||||! !:!!||||||||||||||| |||||||||:!!| uGlnLeuLysSerCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysL 1695060 : ACAATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGT : 1695116 259 : euGluAsnIlePheThrIleIleValLeuGlyGlnValLeuPheLeuAlaValVal : 276 ||||||||||||||:!!:!::!!|||||||||||||||||||||||||||:!!||| euGluAsnIlePheSerLeuLeuValLeuGlyGlnValLeuPheLeuAlaMetVal 1695117 : TGGAGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTA : 1695170 277 : IleCysLeuValGlyPheGlnLeuPheLeu >>>> Target Intron 5 >>> : 287 :!!||||||||||||!:!|||||||||||| 415 bp LeuCysLeuValGlyTyrGlnLeuPheLeu++ 1695171 : CTTTGCCTCGTGGGATATCAGCTATTTCTGgt........................ : 1695205 288 : > MetAspThrProAlaSerArgLysValSerLeuValLeuAsnPheAlaGlyTh : 304 ! |||:!!||| !!||||||!!.|||.!!||||||||||||.!.|||||||| ++ThrAspSerProProSerArgAsnValGlyLeuValLeuAsnLeuAlaGlyTh 1695206 : .agACAGACTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCAC : 1695669 305 : rLeuCysGlnLeuLeuMetPheThrTyrSerCysAspAspLeuIleGlnGluSerV : 323 |||||||||||||!!!|||||||||||||||||||||! !|||! !::!||||||: rLeuCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGluSerM 1695670 : TTTGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCA : 1695726 324 : alLysValGlyAsnAlaIlePheSerGlyProTrpAlaSerLeuProMetAspGlu : 341 !! ! |||.!!!..|||:!!|||:!! !!|||||||||!:!||||||||||||..! etAspValSerArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAspArg 1695727 : TGGACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGA : 1695780 342 : ValGlyArgValLeuArgLysAsnLeuValIleValIleMetArgSerHisArgVa : 360 !|||!:! !:!!|||:!!!:!:!!:!!!!:|||||||||||||||:!!||| AsnGlyLysSerValArgGlnSerMetLeuMetValIleMetArgSerAsnArgCy 1695781 : AATGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTG : 1695837 361 : lCysCysLeuThrAlaGlyLysPhePheProValSerLeuGluThrSerThrAla : 379 !|||||||||||||||.!! !||||||||||||||||||||||||! !|||!.! sCysCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrGly+ 1695838 : TTGCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGg : 1695894 380 : >>>> Target Intron 6 >>>> IleLeuSerThrAlaMetSerTyrPheT : 388 319 bp :!!||||||||||||||||||||||||| + ++ValLeuSerThrAlaMetSerTyrPheT 1695895 : t.........................agGTCCTCAGCACTGCAATGTCATACTTTA : 1696240 389 : hrLeuLeuLysHisSerSerLeu : 395 ||||||||!:!!!.|||!!!:!! hrLeuLeuArgGlnSerThrMet 1696241 : CACTACTGAGACAATCGACTATG : 1696263 vulgar: AfOr84 0 395 . KQ414915.1 1692073 1696263 + 1325 M 65 195 5 0 2 I 0 1728 3 0 2 M 84 252 S 0 1 5 0 2 I 0 96 3 0 2 S 1 2 M 34 102 5 0 2 I 0 405 3 0 2 M 44 132 G 1 0 M 7 21 S 0 2 5 0 2 I 0 29 3 0 2 S 1 1 M 49 147 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1692074 1696263 1325 + . gene_id 1 ; sequence AfOr84 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1692074 1692268 . + . KQ414915.1 exonerate:protein2genome:local exon 1692074 1692268 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1692269 1692270 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1692269 1694000 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1693999 1694000 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694001 1694253 . + . KQ414915.1 exonerate:protein2genome:local exon 1694001 1694253 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694254 1694255 . + . intron_id 2 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1694254 1694353 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1694352 1694353 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694354 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694354 1694457 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695021 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695021 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1695022 1695023 . + . intron_id 4 ; splice_site "gg" KQ414915.1 exonerate:protein2genome:local intron 1695022 1695054 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1695053 1695054 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695055 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1695055 1695202 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 5 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 5 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 4 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 6 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 6 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 5 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696263 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696263 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1692074 1696263 1325 + . alignment_id 1 ; Query AfOr84 ; Align 1692074 1 195 ; Align 1694001 66 252 ; Align 1694356 151 102 ; Align 1694867 185 132 ; Align 1694999 230 21 ; Align 1695056 238 147 ; Align 1695618 287 276 ; Align 1696213 379 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 812 Query range: 7 -> 391 Target range: 1710221 -> 1713318 8 : AspIleSerIleIleTrpThrSerPheLeuMetLysIleValGlyLeuTrpLeuAl : 26 |||:!!.!!.!!! ! !||||||.!.!!!:!!|||!!::!!|||||||||:!!|| AspLeuGlyPheSerValThrSerMetPheValLysMetIleGlyLeuTrpMetAl 1710222 : GACTTAGGTTTCAGCGTGACTTCGATGTTCGTGAAAATGATCGGATTGTGGATGGC : 1710276 27 : aAlaAspArgCysGluGlnArgArgArgAspPheAlaLeuIleTyrThrValGlyA : 45 | !:!!!:!! !||||||!.! !|||:!! ! .!!|||.!!|||||| aLysAsnGlnPheGluGlnHisValArgAsnValThrLeuPheTyrThrPhePheP 1710277 : GAAAAATCAGTTCGAGCAACATGTCAGAAACGTGACGTTGTTCTACacattcttct : 1710333 46 : laLeuPheIleIleValCysIleGlyPheArgAspIleTyrPheThrTrpGlyAsn : 63 ::: ... ! !!! !:!:! ! !! !:!!:!:||| !:!!||||||:!! heValSerPheGlyPheTyrValGluAlaThrAsnLeuTyrHisSerTrpGlyAsp 1710334 : tcgtttccttcGGATTCTACGTGGAAGCTACGAACCTGTACCACTCGTGGGGCGAT : 1710387 64 : PheSer >>>> Target Intron 1 >>>> AspSerValTyrIleSerCys : 72 .!!||| 468 bp |||!!!:!!!:! !! !||| LeuSer++ ++AspThrLeuPheAspIleCys 1710388 : CTCAGCgt.........................agGACACACTGTTCGACATATGC : 1710882 73 : AsnAsnLeuTyrLeuMetIleValValLeuLysValSerValLeuTyrAlaHisLy : 91 !.! !|||! :!!!!:!!: !!.!:!!|||:!!! !:!!|||!:! !:!!|| ThrLeuLeuSerValIleMetProAlaIleLysIleIleIleLeuPheIleAsnLy 1710883 : ACTCTTCTGTCGGTGATAATGCCCGCTATCAAAATAATCATCCTGTTTATCAACAA : 1710939 92 : sMetGluPhePheAsnLeuValThrPheThrArgLysAsnPheTrpArgProTyrA : 110 | !|||||||||..!|||:!!..!!:!|||..!::!.!.||| !!.! ! !! sGluGluPhePheArgLeuIleValTyrThrGluArgGlnPheMetAsnGlyAspT 1710940 : GGAGGAGTTTTTCCGTTTGATCGTGTACACAGAGCGACAATTCATGAACGGGGATT : 1710996 111 : rgAspProGluGluLysLeuIleLeuAlaGluCysLysArgIleCysThrIlePhe : 128 !:!! !!!:|||!:! !|||:!! !!!:|||||||||:!:||||||.!!||| yrAsnGluAspGluArgLysIleValPheAspCysLysArgLeuCysThrPhePhe 1710997 : ACAACGAGGACGAGAGGAAGATTGTGTTCGATTGTAAACGCCTGTGTACATTCTTC : 1711050 129 : ValValValIleSerPheCysAlaGlnGlyThrCysThrGlyTyrMetValThrPr : 147 ..! ! !!:!!|||! ! .!! !..! ! ! !..!|||:!:|||||||| ThrCysPheLeuSerSerValThrLeuSerCysValLeuSerTyrValValThrPr 1711051 : ACTTGTTTCCTCTCATCTGTGACTTTATCGTGCGTTCTCTCTTACGTCGTCACTCC : 1711107 148 : oIleIle{A} >>>> Target Intron 2 >>>> {la}AsnIleGlyLysA : 155 |||| !{ } 119 bp { !}|||||||||!:!| oIleTyr{M}++ ++{et}AsnIleGlyArgA 1711108 : AATTTAC{A}gt.........................ag{TG}AATATTGGAAGAA : 1711250 156 : snGluSerAsnArgGluLeuProPheAsnLeuTrpValAspPheProValGlyLeu : 173 ||||||||:!!||| !|||||||||!!.:!!|||:!!|||.!.|||..!..!:!! snGluSerAspArgIleLeuProPheLysMetTrpIleAspIleProThrSerMet 1711251 : ACGAATCCGACAGAATACTGCCGTTTAAAATGTGGATTGATATACCGACATCGATG : 1711304 174 : SerProTyrPheGluIleLeuPheThrIleGln >>>> Target Intron 3 : 185 !!!|||||||||||||||...||||||:!!||| 546 bp ThrProTyrPheGluIlePhePheThrLeuGln++ 1711305 : ACACcgtattttgaaatattcttcaccTTACAGgt..................... : 1711342 186 : >>>> IleLeuCysValTyrHisValGlyValCysTyrIleCysPheAspAsnLe : 201 :!!|||! !!.!|||!!.:!!|||||| !!||| !||||||||||||:! ++ValLeuSerAlaTyrGlnIleGlyValSerTyrGlyCysPheAspAsnVa 1711343 : ....agGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGGTTGCTTCGACAACGT : 1711934 202 : uLeuCysIleValAsnLeuHisValAlaGlyGlnPheArgIleLeuGlnHisArgL : 220 !|||||||||:!!|||||||||:!!||| !||||||||||||||||||||||||| lLeuCysIleMetAsnLeuHisLeuAlaThrGlnPheArgIleLeuGlnHisArgL 1711935 : TCTATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAATACTGCAACATAGAC : 1711991 221 : euArgSerLeuSerSerAlaGluProGlyAspArgArgAspAla{A} >>>> Ta : 235 || !!:!:!!!:!.!! !:!! ! !.!.! !! !!!: !{ } euValAsnIleAsnGlyLeuLysSerLysGlnThrProGluLys{A}++ 1711992 : TGGTGAATATAAACGGTCTGAAGAGCAAACAGACACCGGAGAAA{G}gt....... : 1712039 236 : rget Intron 4 >>>> {rg}LysLeuTyrAlaLysLeuLysSerCysValLe : 246 36 bp { !}!!.! !|||! ! !!!|||!!!||||||! -+{sp}AsnSerTyrAspValPheLysArgCysValAr 1712040 : ..................gg{AT}AACTCTTACGACGTTTTCAAAAGATGCGTTCG : 1712105 247 : uHisHisGlnAlaLeuThrLysTyrCysLysGlnLeuGluAsnIlePheThrIleI : 265 !!!.||||||:!!|||! ! !:!|||::::::||||||...:::|||!:!!!:| gGlnHisGlnSerLeuMetAlaPheCysGluLysLeuGluGluMetPheSerMetI 1712106 : TCAACATCAATCTCTGATGGCTTTCTgcgagaaactcgaagaaatgTTCAGTATGA : 1712162 266 : leValLeuGlyGlnValLeuPheLeuAlaValValIleCysLeuValGlyPheGln : 283 ||:!!|||||||||:!!||| ! !!!::!:!! !!!!:||||||! !! !! !||| leIleLeuGlyGlnLeuLeuValPheSerIlePheMetCysLeuAspValCysGln 1712163 : TTATACTGGGGCAATTGTTAGTGTTCAGTATTTTTATGTGTCTCGACGTGTGCCAA : 1712216 284 : LeuPheLeu >>>> Target Intron 5 >>>> MetAspThrProAlaSer : 292 :!!.!!||| 142 bp ! !.!! !!!.!.!! ValLeuLeu++ ++ProGlyAlaSerValGly 1712217 : GTACTTCTGgt.........................agCCAGGTGCATCTGTGGGT : 1712385 293 : ArgLysValSerLeuValLeuAsnPheAlaGlyThrLeuCysGlnLeuLeuMetPh : 311 !:!:!!::: .........:::...|||||| !:!!||||||||||||||||| LysGlnMetIlePheThrPheHisLeuAlaGlyCysMetCysGlnLeuLeuMetPh 1712386 : AAACAGAtgattttcacgtttcacctAGCGGGATGTATGTGTCAATTGCTGATGTT : 1712442 312 : eThrTyrSerCysAspAspLeuIleGlnGluSerValLysValGlyAsnAlaIleP : 330 |||||||||||||||| !:!!||| !||||||:!!!!.||| !.!.|||:!:! eThrTyrSerCysAspCysIleIleThrGluSerLeuAsnValThrGluAlaValT 1712443 : TACGTACAGCTGCGATTGTATAATAACGGAAAGTTTGAACGTGACGGAAGCGGTGT : 1712499 331 : heSerGlyProTrpAlaSerLeuProMetAspGluValGlyArgValLeuArgLys : 348 :!..!||||||||| !! !!|||||||||..! ! !||||||:!!:!!|||||| yrAspGlyProTrpProArgLeuProMetSerThrArgGlyArgMetIleArgLys 1712500 : ACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGAAGAATGATAAGGAAG : 1712553 349 : AsnLeuValIleValIleMetArgSerHisArgValCysCysLeuThrAlaGlyLy : 367 :!!|||:!!:!!||||||!!:||||||... ! !||||||||||||||| !! AspLeuIleLeuValIleIleArgSerArgValProCysCysLeuThrAlaArgGl 1712554 : GATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTGCTTGACCGCCAGAGG : 1712610 368 : sPhePheProValSerLeuGluThrSerThrAla >>>> Target Intron 6 : 379 !|||||| !:!!||||||||||||! !||| ! 634 bp yPhePheValIleSerLeuGluThrTyrThrLys++ 1712611 : ATTCTTCGTAATATCTTTGGAAACGTATACGAAGgt.................... : 1712648 380 : >>>> IleLeuSerThrAlaMetSerTyrPheThrLeuLeuLys : 391 :!!:!!|||||||||:!!||||||||||||||||||!:! ++ValIleSerThrAlaValSerTyrPheThrLeuLeuArg 1712649 : .....agGTTATAAGTACAGCAGTGTCGTACTTCACACTGTTAAGG : 1713318 vulgar: AfOr84 7 391 . KQ414915.1 1710221 1713318 + 812 M 58 174 5 0 2 I 0 464 3 0 2 M 84 252 S 0 1 5 0 2 I 0 115 3 0 2 S 1 2 M 34 102 5 0 2 I 0 542 3 0 2 M 50 150 S 0 1 5 0 2 I 0 32 3 0 2 S 1 2 M 51 153 5 0 2 I 0 138 3 0 2 M 92 276 5 0 2 I 0 630 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1710222 1713318 812 + . gene_id 2 ; sequence AfOr84 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1710222 1710395 . + . KQ414915.1 exonerate:protein2genome:local exon 1710222 1710395 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1710396 1710397 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1710396 1710863 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1710862 1710863 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1710864 1711116 . + . KQ414915.1 exonerate:protein2genome:local exon 1710864 1711116 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711117 1711118 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711117 1711235 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1711234 1711235 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711236 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711236 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712036 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712036 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712037 1712038 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712037 1712072 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1712071 1712072 . + . intron_id 3 ; splice_site "GG" KQ414915.1 exonerate:protein2genome:local cds 1712073 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1712073 1712227 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712228 1712229 . + . intron_id 5 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712228 1712369 . + . intron_id 5 KQ414915.1 exonerate:protein2genome:local splice3 1712368 1712369 . + . intron_id 4 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1712370 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712370 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 6 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 6 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 5 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713318 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713318 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1710222 1713318 812 + . alignment_id 2 ; Query AfOr84 ; Align 1710222 8 174 ; Align 1710864 66 252 ; Align 1711238 151 102 ; Align 1711886 185 150 ; Align 1712075 236 153 ; Align 1712370 287 276 ; Align 1713280 379 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 483 Query range: 150 -> 399 Target range: 1707001 -> 1709258 151 : AsnIleGlyLysAsnGluSerAsnArgGluLeuProPheAsnLeuTrpValAspPh : 169 !::||||||||||||||||||:!!||| !||| ! !!|||!!!|||:!!||||| SerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAspPh 1707002 : AgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGACTT : 1707056 170 : eProValGlyLeuSerProTyrPheGluIleLeuPheThrIleGln >>>> Tar : 185 ||||..! !:!!!!!||||||!:!||||||||||||||| ||| eProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707057 : TCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt........ : 1707106 186 : get Intron 1 >>>> IleLeuCysValTyrHisValGlyValCysTyrIleC : 197 276 bp :!!!!! !||| :!!||| !!:!! !!|||:!!| ++ValPheIleValMetTyrValCysIleSerTyrLeuC 1707107 : .................agGTTTTTATCGTAATGTACGTTTGCATAAGCTACCTTT : 1707416 198 : ysPheAspAsnLeuLeuCysIleValAsnLeuHisValAlaGlyGlnPheArgIle : 215 ||.!!||||||!!!||||||!!::!!|||||||||..!||| !|||||||||||| ysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIle 1707417 : GTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATA : 1707470 216 : LeuGlnHisArgLeuArgSerLeuSerSerAlaGluProGlyAspArgArgAspAl : 234 ||||||:!!|||||| !!:!:!!!!!.!!|||.!. ! !!... ::: :: LeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAspLysIleSe 1707471 : TTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttc : 1707527 235 : aArgLysLeuTyrAlaLysLeuLysSerCysValLeuHisHisGlnAlaLeuThrL : 253 ::::||| :!!!!.! ! ! ..!||| ! ! ! !:!! !! !! !: rLysLysThrProSerAsnSerAspGluCysTyrAlaLysPheLysAsnCysIleG 1707528 : gaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTC : 1707584 254 : ysTyrCysLysGlnLeuGluAsnIlePheThrIleIleValLeuGlyGlnValLeu : 271 !! ! !:!! !||| !.!. !! !!.! !:!! ! !! ! ! !||| lnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluValPheGlyLeu 1707585 : AACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGGTGTTCGGTTTA : 1707638 272 : PheLeuAlaValValIleCysLeuValGlyPheGlnLeuPheLeuMetAspThrPr : 290 |||:!! !!.! !:!:! ||| !!.!!!!. !:!!! !||| ! ! PheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAspGlyTyrLe 1707639 : TTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGGATATTT : 1707695 291 : oAlaSer >>>> Target Intron 2 >>>> ArgLysValSerLeuValLe : 299 !!.!! ! 478 bp ||| :!!!!!!!!:!!!! uValMet++ ++Arg---LeuThrPheLeuPh 1707696 : GGTGATGgt.........................agCGC---CTTACTTTCTTGTT : 1708197 300 : uAsnPheAlaGlyThrLeuCysGlnLeuLeuMetPheThrTyrSerCysAspAspL : 318 !:!!.!..!!||| !|||||||||||||||||||||||||||||||||||| !| eHisLeuThrGlyCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysL 1708198 : TCACCTAACGGGATGCCTGTGCCAACTGTTGATGTTCACCTACAGCTGCGATTGCC : 1708254 319 : euIleGlnGluSerValLysValGlyAsnAlaIlePheSerGlyProTrpAlaSer : 336 |||||!:!||||||:!!!!.|||!.!|||||||||!:!..! !! !!||| ! ! euIleArgGluSerLeuAsnValAlaAsnAlaIleTyrAspCysSerTrpIleHis 1708255 : TGATACGAGAAAGCTTGAACGTGGCCAATGCTATATACGACTGCTCGTGGATTCAC : 1708308 337 : LeuProMetAspGluValGlyArgValLeuArgLysAsnLeuValIleValIleMe : 355 ||||||||||||..! !||||||:!!|||||||||:!!|||..!.!!|||||| LeuProMetAspArgSerGlyArgMetLeuArgLysAspLeuThrPheValIleGl 1708309 : TTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGACATTCGTCATTGG : 1708365 356 : tArgSerHisArgValCysCysLeuThrAlaGlyLysPhePheProValSerLeuG : 374 ||||||... ! !||||||||||||||| !! !||||||||||||||||||| yArgSerArgValProCysCysLeuThrAlaCysGlyPhePheProValSerLeuG 1708366 : AAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGG : 1708422 375 : luThrSerThrAla >>>> Target Intron 3 >>>> IleLeuSerThrA : 383 |||||! !|||:!! 759 bp ||||||||||||| luThrTyrThrSer++ ++IleLeuSerThrA 1708423 : AAACGTACACTTCGgt.........................agATTTTAAGTACCG : 1709208 384 : laMetSerTyrPheThrLeuLeuLysHisSerSerLeuGluLysMetGlu : 399 || !||||||||||||||||||::! ! ..!..! !|||! !:!:||| laAlaSerTyrPheThrLeuLeuArgLysGlnGluAlaGluIleValGlu 1709209 : CAGCGTCATACTTCACACTGCTACGAAAACAAGAAGCAGAAATAGTTGAA : 1709258 vulgar: AfOr84 150 399 . KQ414915.1 1707001 1709258 + 483 M 34 102 5 0 2 I 0 272 3 0 2 M 108 324 5 0 2 I 0 474 3 0 2 M 1 3 G 1 0 M 84 252 5 0 2 I 0 755 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707002 1709258 483 + . gene_id 3 ; sequence AfOr84 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1707002 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707002 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708181 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708180 1708181 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708182 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708182 1708436 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709258 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709258 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1707002 1709258 483 + . alignment_id 3 ; Query AfOr84 ; Align 1707002 151 102 ; Align 1707380 185 324 ; Align 1708182 293 3 ; Align 1708185 295 252 ; Align 1709196 379 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 455 Query range: 150 -> 399 Target range: 1681725 -> 1683075 151 : AsnIleGlyLysAsnGluSerAsnArgGluLeuProPheAsnLeuTrpVal<->As : 168 ||||||||||||!:!!!:..!.!.||| ||||||||| !!! ! ||| :! AsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAs 1681726 : AACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAA : 1681780 169 : pPheProValGlyLeuSerProTyrPheGluIleLeuPheThrIleGln >>>> : 185 !!!.|||..!..!|||!!!||||||:::||||||||||||..!|||:!! nLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681781 : CTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt..... : 1681833 186 : Target Intron 1 >>>> IleLeuCysValTyrHisValGlyValCysTyrI : 196 120 bp ! !|||! !||| ||| !|||:!!|||!:! ++ThrLeuSerValValHisSerGlyIleCysPheC 1681834 : ....................agACATTATCTGTGGTGCATTCGGGAATTTGTTTCT : 1681984 197 : leCysPheAspAsnLeuLeuCysIleValAsnLeuHisValAlaGlyGlnPheArg : 214 !||||||||||||!!!|||||||||:!!!:!:!!||||||!.!|||||||||!:! ysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLys 1681985 : GTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAG : 1682038 215 : IleLeuGlnHisArgLeuArgSerLeuSerSerAlaGluProGlyAspArgArgAs : 233 |||||||||:!!!:!|||!:!!!!:!!! !||| ||| ......:::... IleLeuGlnAsnLysLeuGlnThrValLeuSer---GluLysSerSerLysGluLy 1682039 : ATTTTACAAAACAAACTCCAAACAGTATTGAGT---GAGAAatcttcgaaagaaaa : 1682092 234 : pAlaArgLysLeuTyrAlaLysLeuLysSerCysValLeuHisHisGlnAlaLeuT : 252 ::: !|||||| !:!!!!!|||..!||||||! !:!!|||!!. !||| sSerAlaGlyLeuTyrLysGluPheLysGluCysValGlnTyrHisHisLeuLeuL 1682093 : atcagctGGACTGTATAAAGAGTTCAAGGAGTGCGTACAGTATCATCATTTGCTTC : 1682149 253 : hrLysTyrCysLysGlnLeuGluAsnIlePheThrIleIleValLeuGlyGlnVal : 270 !..!||| ::::::|||||| :!!||| !:!! :!!:!! !|||:!! euSerTyrValGluLysLeuGluTyrValPheCysValProLeuMetIleGlnLeu 1682150 : TTTCGtacgtggaaaaattggaatacgTATTTTGTGTCCCGTTGATGATTCAATTG : 1682203 271 : LeuPheLeuAlaValValIleCysLeuValGlyPheGlnLeuPheLeu >>>> T : 287 ||| ! ! !::!:!!|||:!:|||:!! !||||||||||||! ||| LeuValSerSerIleValLeuCysValSerGlyPheGlnLeuSerLeu++ 1682204 : CTGGTGTCTAGCATAGTTCTGTGCGTCTCGGGGTTTCAACTATCATTGgt...... : 1682256 288 : arget Intron 2 >>>> MetAspThrProAlaSerArgLysValSerLeuVa : 298 285 bp :!!:!! ! ! !! !!:!::!:!!! !!!!:! ++ValAsnGlyValLeuMetLysArgLeuLeuPheLe 1682257 : ...................agGTGAACGGTGTATTGATGAAACGATTGTTGTTCCT : 1682572 299 : lLeuAsnPheAlaGlyThrLeuCysGlnLeuLeuMetPheThrTyrSerCysAspA : 317 ! ! !!||| !||| !:!! |||:::...:::...||| !:!|||:!!| uAsnTyrPheLeuGlyGlyValIleGlnIlePheLeuIleThrLeuAsnCysAsnA 1682573 : AAATTACTTTCTCGGTGGAGTGATacagatatttttaataacccTAAATTGCAACG : 1682629 318 : spLeuIleGlnGluSerValLysValGlyAsnAlaIlePheSerGlyProTrpAla : 335 ||:!!!!::!!:!!|||! ! :!!|||!..||||||!:!||| !! !|||! ! spIleMetGluGlnSerGlyAlaIleGlyThrAlaIleTyrSerCysAsnTrpGlu 1682630 : ACATAATGGAGCAAAGTGGCGCTATAGGAACAGCGATCTACAGTTGTAATTGGGAG : 1682683 336 : SerLeuProMetAspGluValGlyArgValLeuArgLysAsnLeuValIleValIl : 354 !!! :::... ::! !!!||||||:!!:!!:!!||||||!! ArgAsnValTyrAsnHisPheTyrGln---PheArgLysAspMetMetIleValMe 1682684 : AGGAAtgtttataatcatttttaccAG---TTCAGAAAGGATATGATGATTGTAAT : 1682737 355 : eMetArgSerHisArgValCysCysLeuThrAlaGlyLysPhePheProValSerL : 373 ::!:|||:!! ! ||| !|||! !:!!:!!|||!.!||||||||||||:!!|||| tValArgAlaLysArgProCysTyrIleSerAlaAlaLysPhePheProIleSerL 1682738 : GGTACGAGCGAAACGTCCTTGCTACATTTCAGCAGCGAAATTCTTTCCAATCTCCC : 1682794 374 : euGluThrSerThrAla >>>> Target Intron 3 >>>> IleLeuSerT : 382 |||||:!!! !||| 201 bp :!:||||||. euGluSerPheThrLys++ ++ValLeuSerA 1682795 : TTGAATCGTTCACGAaggt.........................agGTGTTAAGTG : 1683022 383 : hrAlaMetSerTyrPheThrLeuLeuLysHisSerSerLeuGluLysMetGlu : 399 !!.!! ||||||!:!|||||||||::: ! !..!:!!!!: !!:||| laThrAlaSerTyrTyrThrLeuLeuArgThrMetGluMetAspValIleGlu 1683023 : CAACAGCATCTTATTATACACTGCTGCGTACAATGGAAATGGACGTCATAGAG : 1683075 vulgar: AfOr84 150 399 . KQ414915.1 1681725 1683075 + 455 M 17 51 G 0 3 M 17 51 5 0 2 I 0 116 3 0 2 M 41 123 G 1 0 M 60 180 5 0 2 I 0 281 3 0 2 M 58 174 G 1 0 M 33 99 5 0 2 I 0 197 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681726 1683075 455 + . gene_id 4 ; sequence AfOr84 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681726 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681726 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682253 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682253 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1682254 1682255 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1682254 1682538 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1682537 1682538 . + . intron_id 1 ; splice_site "aG" KQ414915.1 exonerate:protein2genome:local cds 1682539 1682811 . + . KQ414915.1 exonerate:protein2genome:local exon 1682539 1682811 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1682812 1682813 . + . intron_id 3 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1682812 1683012 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1683011 1683012 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1683013 1683075 . + . KQ414915.1 exonerate:protein2genome:local exon 1683013 1683075 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681726 1683075 455 + . alignment_id 4 ; Query AfOr84 ; Align 1681726 151 51 ; Align 1681780 168 51 ; Align 1681951 185 123 ; Align 1682074 227 180 ; Align 1682539 287 174 ; Align 1682713 346 99 ; Align 1683013 379 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 336 Query range: 147 -> 286 Target range: 1699025 -> 1699971 148 : IleIleAlaAsnIleGlyLysAsnGluSerAsnArgGluLeuProPheAsnLeuTr : 166 |||:!!||||||||||||:::|||...|||:!!|||! !||||||||||||:!!|| IleLeuAlaAsnIleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTr 1699026 : ATTTTAgcaaatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTG : 1699080 167 : pValAspPheProValGlyLeuSerProTyrPhe{Gl} >>>> Target Intr : 178 |||||||!!.|||:!!..!:!!|||||| !:!{||} 499 bp pValAspLeuProLeuSerValSerProThrTyr{Gl}-- 1699081 : GGTTGATTTGCCGCTGTCTGTGTCACCAACGTAC{GA}aa................ : 1699120 179 : on 1 >>>> {u}IleLeuPheThrIleGlnIleLeuCysValTyrHisValGly : 192 {|} !!!! ! ! !|||:!!|||! !:!!|||||||||||| ++{u}AspPheValPheAlaGlnValLeuSerLeuTyrHisValGly 1699121 : .........ag{A}GATTTTGTGTTTGCACAGGTTCTGTCTTTGTACCACGTTGGT : 1699657 193 : ValCysTyrIleCysPheAspAsnLeuLeuCysIleValAsnLeuHisValAlaGl : 211 |||||||||||||||||||||||||||||||||:!::!!|||||||||!.!||| ValCysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaTh 1699658 : GTATGTTACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTAC : 1699714 212 : yGlnPheArgIleLeuGlnHisArgLeuArgSerLeuSerSerAlaGluProGlyA : 230 !||||||||||||||||||:!!|||||| !!:!|||.!!..!.!!.!. ! !. rGlnPheArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysG 1699715 : TCAATTTCGTATACTGCAATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGC : 1699771 231 : sp >>>> Target Intron 2 >>>> ArgArgAspAlaArgLysLeuTyrA : 239 !. 30 bp !||| !|||..!!!.! !||| ln++ -+SerArgPheAlaGluAsnCysTyrL 1699772 : AAgt.........................tgTCTCGTTTCGCGGAGAACTGTTATA : 1699828 240 : laLysLeuLysSerCysValLeuHisHisGlnAlaLeuThrLysTyrCysLysGln : 257 ! !!!!|||!:!||||||! !!!.|||||| !! !! !! !|||||| ! ::! ysAlaPheLysAsnCysValArgGlnHisGlnAsnHisIleThrTyrCysHisArg 1699829 : AGGCGTTTAAAAATTGCGTACGACAACATCAGAATCATATCACGTACTGTCACAGA : 1699882 258 : LeuGluAsnIlePheThrIleIleValLeuGlyGlnValLeuPheLeuAlaValVa : 276 |||.!..!.|||||||||:!!||||||||||||!!.:!!||| !!!!!::!:!!:! LeuAsnGluIlePheThrValIleValLeuGlyHisIleLeuValPheSerLeuLe 1699883 : TTGAACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGCCTTCT : 1699939 277 : lIleCysLeuValGlyPheGlnLeuPheLeu : 286 !|||||||||||||||||||||:!!.!!:!! uIleCysLeuValGlyPheGlnValLeuVal 1699940 : GATATGTCTGGTTGGATTCCAAGTGCTCGTA : 1699971 vulgar: AfOr84 147 286 . KQ414915.1 1699025 1699971 + 336 M 30 90 S 0 2 5 0 2 I 0 495 3 0 2 S 1 1 M 52 156 5 0 2 I 0 26 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699026 1699971 336 + . gene_id 5 ; sequence AfOr84 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1699026 1699117 . + . KQ414915.1 exonerate:protein2genome:local exon 1699026 1699117 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699118 1699119 . + . intron_id 1 ; splice_site "AA" KQ414915.1 exonerate:protein2genome:local intron 1699118 1699616 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699615 1699616 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699617 1699773 . + . KQ414915.1 exonerate:protein2genome:local exon 1699617 1699773 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699774 1699775 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699774 1699803 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1699802 1699803 . + . intron_id 1 ; splice_site "TG" KQ414915.1 exonerate:protein2genome:local cds 1699804 1699971 . + . KQ414915.1 exonerate:protein2genome:local exon 1699804 1699971 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699026 1699971 336 + . alignment_id 5 ; Query AfOr84 ; Align 1699026 148 90 ; Align 1699618 179 156 ; Align 1699804 231 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 282 Query range: 291 -> 385 Target range: 1702974 -> 1703256 292 : SerArgLysValSerLeuValLeuAsnPheAlaGlyThrLeuCysGlnLeuLeuMe : 310 :!!|||::!:!!!!!!!!|||!!!:!!.!.!.!|||!:!|||||||||||||||:! AlaArgArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLeuLe 1702975 : GCGAGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATTGCT : 1703029 311 : tPheThrTyrSerCysAspAspLeuIleGlnGluSerValLysValGlyAsnAlaI : 329 :||||||||||||||||||! !||||||:!!||||||..!!!.:!!|||!.!|||| uPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaI 1703030 : ATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGA : 1703086 330 : lePheSerGlyProTrpAlaSerLeuProMetAspGluValGlyArgValLeuArg : 347 ||!:! !||||||||| ! !||||||||||||:!!!.!|||||| !|||||| leTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArg 1703087 : TATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGA : 1703140 348 : LysAsnLeuValIleValIleMetArgSerHisArgValCysCysLeuThrAlaGl : 366 !:!:!!|||..!!!:||||||:!:||||||...!:! ! !!||||||||||||.! ArgAspLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSe 1703141 : AGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAG : 1703197 367 : yLysPhePheProValSerLeuGluThrSerThrAlaIleLeuSerThrAlaMetS : 385 ! !||||||||||||||||||||||||!!!|||.!!:!!!!!!:! !:!!.!.| rGlyPhePheProValSerLeuGluThrCysThrThrValPheAsnPheSerPheS 1703198 : CGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATTTCTCATTCT : 1703254 386 : er : 385 || er 1703255 : CT : 1703256 vulgar: AfOr84 291 385 . KQ414915.1 1702974 1703256 + 282 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702975 1703256 282 + . gene_id 6 ; sequence AfOr84 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702975 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1702975 1703256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702975 1703256 282 + . alignment_id 6 ; Query AfOr84 ; Align 1702975 292 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 265 Query range: 183 -> 287 Target range: 1702013 -> 1702355 184 : GlnIleLeuCysValTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe : 202 |||:!!|||! !:!!||||||||||||||||||||||||||||||||||||||||| GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 203 : uCysIleValAsnLeuHisValAlaGlyGlnPheArgIleLeuGlnHisArgLeuA : 221 ||||:!::!!|||||||||!.!||| !||||||||||||||||||:!!|||||| uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 222 : rgSerLeuSerSerAlaGluProGlyAspArgArgAsp{A} >>>> Target I : 234 !!:!|||.!!..!.!!.!. ! !.!. ! !|||{.} 30 erAsnLeuGlyAspThrAsnArgLysGlnValAspAsp{T}-+ 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGAC{A}at............. : 1702167 235 : ntron 1 >>>> {la}ArgLysLeuTyrAlaLysLeuLysSerCysValLeuHi : 247 bp {!!}..!!!.! !||| ! !!!!|||!:!||||||! !!! -+{hr}GluAsnCysTyrLysAlaPheLysAsnCysValArgGl 1702168 : ............cg{CG}GAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACA : 1702233 248 : sHisGlnAlaLeuThrLysTyrCysLysGlnLeuGluAsnIlePheThrIleIleV : 266 .|||||| !! !! !! !|||||| ! ::!|||.!..!.|||||||||:!!|||| nHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleV 1702234 : ACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTG : 1702290 267 : alLeuGlyGlnValLeuPheLeuAlaValValIleCysLeuValGlyPheGlnLeu : 284 ||||||||!!.:!!||| !!!!!::!:!!:!!|||||||||||||||||||||:!! alLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnVal 1702291 : TACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTG : 1702344 285 : PheLeuMet : 287 .!!:!!:!: LeuValVal 1702345 : CTCGTGGTA : 1702355 vulgar: AfOr84 183 287 . KQ414915.1 1702013 1702355 + 265 M 50 150 S 0 1 5 0 2 I 0 26 3 0 2 S 1 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1702355 265 + . gene_id 7 ; sequence AfOr84 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702014 1702164 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702164 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1702165 1702166 . + . intron_id 1 ; splice_site "AT" KQ414915.1 exonerate:protein2genome:local intron 1702165 1702194 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702193 1702194 . + . intron_id 0 ; splice_site "CG" KQ414915.1 exonerate:protein2genome:local cds 1702195 1702355 . + . KQ414915.1 exonerate:protein2genome:local exon 1702195 1702355 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1702355 265 + . alignment_id 7 ; Query AfOr84 ; Align 1702014 184 150 ; Align 1702197 235 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 228 Query range: 288 -> 396 Target range: 1689474 -> 1690091 289 : ThrProAlaSerArgLysValSerLeuValLeuAsnPheAlaGlyThrLeuCysGl : 307 ..!|||.!!!!!! !::::!!! !!!!:!!!!!:!!.!. !|||!:!!!! !!. ValProThrThrThrArgLeuIlePheLeuPheHisMetIleGlySerPheIleHi 1689475 : GTACCTACCACGACGCGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCa : 1689529 308 : nLeuLeuMetPheThrTyrSerCysAspAspLeuIleGlnGluSerValLysValG : 326 .::::::...|||||||||||||||! !! !||||||:!!||||||:!! ! :!!! sIleIlePhePheThrTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleA 1689530 : cataattttcttcacgtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTG : 1689586 327 : lyAsnAlaIlePheSerGlyProTrpAlaSerLeuProMetAspGluValGlyArg : 344 .!!..|||! !:!:!!||| !|||.!! !|||||||||:!!:!!||||||!:! laThrAlaThrTyrAlaGlyMetTrpThrValLeuProMetAsnLysValGlyLys 1689587 : CAACAGCAACGTATGCAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAA : 1689640 345 : ValLeuArgLysAsnLeuValIleValIleMetArgSerHisArgValCysCysLe : 363 :!!:!!||| !|||:!! !:!!:!!! !:!:|||||| !:! !||||||:! MetIleArgGlyAsnMetLysLeuMetThrValArgSerLeuGlnProCysCysIl 1689641 : ATGATACGAGGAAATATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCAT : 1689697 364 : uThrAlaGlyLysPhePheProValSerLeuGluThrSerThrAlaIle{Le} > : 380 !||||||||| !||||||||||||||||||:!!|||:!!||||||:!!{! } eThrAlaGlyGlyPhePheProValSerLeuLysThrAlaThrAlaVal{Tr}-+ 1689698 : AACTGCTGGTGGATTCTTTCCTGTCTCCTTGAAAACTGCTACCGCGGTA{TG}ct. : 1689752 381 : >>> Target Intron 1 >>>> {u}SerThrAlaMetSerTyrPheThrLeu : 389 293 bp {!}|||:!!.!!|||||||||||||||||| +-{p}SerSerThrMetSerTyrPheThrLeu 1689753 : ........................at{G}AGTTCCACAATGTCGTATTTCACGCTC : 1690068 390 : LeuLysHisSerSerLeuGlu : 396 :!!!:!.!.!!!||| !||| MetArgGluArgSerAlaGlu 1690069 : ATGAGAGAGAGATCGGCTGAA : 1690091 vulgar: AfOr84 288 396 . KQ414915.1 1689474 1690091 + 228 M 91 273 S 0 2 5 0 2 I 0 289 3 0 2 S 1 1 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1689475 1690091 228 + . gene_id 8 ; sequence AfOr84 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1689475 1689749 . + . KQ414915.1 exonerate:protein2genome:local exon 1689475 1689749 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689750 1689751 . + . intron_id 1 ; splice_site "ct" KQ414915.1 exonerate:protein2genome:local intron 1689750 1690042 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1690041 1690042 . + . intron_id 0 ; splice_site "AT" KQ414915.1 exonerate:protein2genome:local cds 1690043 1690091 . + . KQ414915.1 exonerate:protein2genome:local exon 1690043 1690091 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1689475 1690091 228 + . alignment_id 8 ; Query AfOr84 ; Align 1689475 289 273 ; Align 1690044 381 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 213 Query range: 65 -> 149 Target range: 1698547 -> 1698799 66 : AspSerValTyrIleSerCysAsnAsnLeuTyrLeuMetIleValValLeuLysVa : 84 |||!!!!.!|||! !:!!||||||! !|||! !|||!!:!!:|||:!!||||||:! AspCysAlaTyrThrAlaCysAsnIleLeuCysLeuIleMetValLeuLeuLysLe 1698548 : gACTGTGCTTACACCGCTTGTAACATTCTCTGCCTGATTATGGTACTGTTAAAGCT : 1698602 85 : lSerValLeuTyrAlaHisLysMetGluPhePheAsnLeuValThrPheThrArgL : 103 !! !|||:!!!:! !|||!:!! ||||||.!!.!.|||:::...::: | uPheValValPheIleHisArgLysGluPheIleGluLeuLeuValTyrMetTyrL 1698603 : GTTCGTTGTATTCATACACAGGAAAGAATTCATCGAACTgcttgtatatatgtaca : 1698659 104 : ysAsnPheTrpArgProTyrArgAspProGluGluLysLeuIleLeuAlaGluCys : 121 |||||||||||..!! ! !! !||| !.!.||| !|||:!:||| !!!:||| ysAsnPheTrpHisLeuAsnTyrAspCysAsnGluLeuLeuLeuLeuGlnAspCys 1698660 : aaaatttttggcACCTCAATTACGATTGCAACGAACTACTACTGCTGCAAGACTGC : 1698713 122 : LysArgIleCysThrIlePheValValValIleSerPheCysAlaGlnGlyThrCy : 140 !:!|||||| !!||||||! !:!!..!:!!|||!:!|||||||||||||||||| ArgArgIleSerThrIleCysIleThrLeuIleAsnPheCysAlaGlnGlyThrIl 1698714 : AGAAGAATTAGCACTATATGTATCACGTTGATTAACTTCTGTGCTCAAGGCACAAT : 1698770 141 : sThrGlyTyrMetValThrProIleIle : 149 !..!.!!|||:!!:!!|||||||||||| eValSerTyrValLeuThrProIleIle 1698771 : TGTCAGCTACGTGCTAACACCTATTATA : 1698799 vulgar: AfOr84 65 149 . KQ414915.1 1698547 1698799 + 213 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1698548 1698799 213 + . gene_id 9 ; sequence AfOr84 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1698548 1698799 . + . KQ414915.1 exonerate:protein2genome:local exon 1698548 1698799 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1698548 1698799 213 + . alignment_id 9 ; Query AfOr84 ; Align 1698548 66 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 198 Query range: 179 -> 287 Target range: 1688322 -> 1688655 180 : LeuPheThrIleGlnIleLeuCysValTyrHisValGlyValCysTyrIleCysPh : 198 |||.!. !! !||| ||||||||||||!!.:!!|||!.!..!|||||||||! LeuLeuPheThrGlnAlaLeuCysValTyrGlnIleGlyAlaAlaTyrIleCysSe 1688323 : TTGCTATTTACACAGGCGCTGTGCGTGTATCAAATCGGCGCCGCCTATATCTGCTC : 1688377 199 : eAspAsnLeuLeuCysIleValAsnLeuHisValAlaGlyGlnPheArgIleLeuG : 217 !|||!..!!!!!!|||!!::!!|||:!!|||||| ! !!|||||||||||||||. rAspThrPhePheCysMetLeuAsnMetHisValIleCysGlnPheArgIleLeuA 1688378 : CGACACGTTTTTCTGCATGCTGAACATGCACGTGATCTGCCAGTTCCGTATACTAA : 1688434 218 : lnHisArgLeuArgSerLeu<-><-><->SerSerAlaGluProGlyAspArgArg : 232 !.:!!|||||| !!:!:!! ! !..!! !..! !!..! ! !..! snTyrArgLeuLeuAsnMetTrpProValIleAspGluArgThrAsnMetThrGlu 1688435 : ATTACAGACTGTTGAACATGTGGCCGGTCATCGACGAGCGAACGAACATGACCGAA : 1688488 233 : AspAlaArgLysLeuTyrAlaLysLeuLysSerCysValLeuHisHisGlnAlaLe : 251 !!.!!!.!|||! !|||.!!||||||! !..!|||:!! !:!!||||||:!!|| TyrThrAsnLysCysTyrThrLysLeuIleAspCysIleLysAsnHisGlnSerLe 1688489 : TACACGAACAAATGTTACACCAAGCTGATAGATTGCATCAAAAATCATCAGTCGTT : 1688545 252 : uThrLysTyrCysLysGlnLeuGluAsnIlePheThrIleIleValLeuGlyGlnV : 270 |! !:!!!:!||| !:!!|||||||||:!:!:!|||:!:! !:!!||||||!!.: uIleGluPheCysValLysLeuGluAsnValTyrThrLeuThrIleLeuGlyHisI 1688546 : GATCGAGTTCTGCGTGAAACTCGAGAACGTGTACACGTTGACTATACTCGGCCACA : 1688602 271 : alLeuPheLeuAlaValValIleCysLeuValGlyPheGlnLeuPheLeuMet : 287 !!:!! !!!!!::!:!!:!!!!:|||!!!! ! !!:!:!!:!! !!|||:!: leValValPheSerLeuLeuMetCysPheAspThrTyrGluValValLeuVal 1688603 : TAGTGGTCTTCAGCTTGTTGATGTGCTTCGACACGTACGAGGTAGTTCTGGTA : 1688655 vulgar: AfOr84 179 287 . KQ414915.1 1688322 1688655 + 198 M 44 132 G 0 9 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688323 1688655 198 + . gene_id 10 ; sequence AfOr84 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1688323 1688655 . + . KQ414915.1 exonerate:protein2genome:local exon 1688323 1688655 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688323 1688655 198 + . alignment_id 10 ; Query AfOr84 ; Align 1688323 180 132 ; Align 1688464 224 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 5 -> 68 Target range: 1697518 -> 1697707 6 : SerArgAspIleSerIleIleTrpThrSerPheLeuMetLysIleValGlyLeuTr : 24 !!!!:!|||.!!:!!:!::!! !|||||||||||||||||||||||||||||||| ThrLysAspPheAlaLeuLeuMetThrSerPheLeuMetLysIleValGlyLeuTr 1697519 : ACCAAAGATTTTGCTCTGTTAATGACGTCGTTTTTAATGAAGATCGTCGGTCTTTG : 1697573 25 : pLeuAlaAlaAspArgCysGluGlnArgArgArgAspPheAlaLeuIleTyrThrV : 43 ||||||| !|||!!! |||:!!|||!:!||| !:!.!!||||||||||||| pLeuAlaLysAspSerLysGluGluArgLysArgArgTyrThrLeuIleTyrThrV 1697574 : GTTAGCGAAAGACAGCAAGGAGGAACGCAAGCGTCGGTACACTTTGATCTATACGG : 1697630 44 : alGlyAlaLeuPheIleIleValCysIleGlyPheArgAspIleTyrPheThrTrp : 61 ||! !|||:!!!!..!! !|||!! :!: !|||||||||.!!|||!:!:!!||| alValAlaIleLeuPheGlyValTrpValGlnPheArgAspPheTyrTyrSerTrp 1697631 : TGGTCGCGATTTTGTTTGGAGTGTGGGTGCAGTTCAGAGACTTCTATTACTCCTGG : 1697684 62 : GlyAsnPheSerAspSerVal : 68 !||||||.!!! |||:!! ProAsnPheGlyValSerLeu 1697685 : CCGAATTTTGGCGTGAGTTTG : 1697707 vulgar: AfOr84 5 68 . KQ414915.1 1697518 1697707 + 177 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1697519 1697707 177 + . gene_id 11 ; sequence AfOr84 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1697519 1697707 . + . KQ414915.1 exonerate:protein2genome:local exon 1697519 1697707 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1697519 1697707 177 + . alignment_id 11 ; Query AfOr84 ; Align 1697519 6 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 0 -> 86 Target range: 1685751 -> 1686009 1 : MetArgProThrGlySerArgAspIleSerIleIleTrpThrSerPheLeuMetLy : 19 |||!:! !!||| !! !||||||||||||:!!! ||||||:::|| MetGlnAlaThrLysTyrArgAspIleSerLeuLysCysGlyIlePheLeuLeuLy 1685752 : ATGCAGGCGACAAAATACAGGGATATTTCCCTCAAgtgtggaatttttcttttgaa : 1685806 20 : sIleValGlyLeuTrpLeuAlaAlaAspArgCysGluGlnArgArgArgAspPheA : 38 |:::||||||||||||:!!:!! !:!!!!! !|||:!!||||||||| |||. sLeuValGlyLeuTrpMetSerMetAsnSerValGluGluArgArgArgArgPheT 1685807 : attagtCGGCCTCTGGATGTCCATGAACAGCGTCGAGGAGCGTCGAAGGAGGTTCA : 1685863 39 : laLeuIleTyrThrValGlyAlaLeuPheIleIleValCysIleGlyPheArgAsp : 56 !!|||.!! :!!||| !||||||! ! ! !|||! !:!:..! ! !.!||| hrLeuPheGlySerValPheAlaLeuSerTyrGlyValTyrValAsnValAsnAsp 1685864 : CGTTGTTCGGATCAGTTTTCGCCCTTTCTTACGGCGTTTACGTGAACGTAAACGAT : 1685917 57 : IleTyrPheThrTrpGlyAsnPheSerAspSerValTyrIleSerCysAsnAsnLe : 75 ||| ! !!:!!::! !:!!.!.|||! |||:!! |||!.!!! ..!:::!! IleLeuHisSerPheAspAspLeuSerValSerMetArgIleLys***ArgSerPh 1685918 : ATTCTTCACAGCTTCGATGATCTGAGCGTGAGTATGAGAATTAAGTGACGTTCGTT : 1685974 76 : uTyrLeuMetIleValValLeuLysValSerVal : 86 ! ! :!!!!: !:!!:!! ||| !:!! eLysValIleAlaGlnIleMetPheValValIle 1685975 : CAAAGTAATTGCGCAAATCATGTTTGTCGTGATT : 1686009 vulgar: AfOr84 0 86 . KQ414915.1 1685751 1686009 + 116 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1685752 1686009 116 + . gene_id 12 ; sequence AfOr84 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1685752 1686009 . + . KQ414915.1 exonerate:protein2genome:local exon 1685752 1686009 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1685752 1686009 116 + . alignment_id 12 ; Query AfOr84 ; Align 1685752 1 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 788 Query range: 0 -> 223 Target range: 1692073 -> 1694983 1 : MetArgArgProGlnAspLysAspIleSerIleIleTrpThrSerPheLeuMetLy : 19 |||!.! ! !|||..!|||||||||||||||:!!|||:!!! !||||||||||| MetHisLeuValGlnSerLysAspIleSerIleValTrpSerPhePheLeuMetLy 1692074 : ATGCATTTAGTGCAGAGTAAAGATATCTCGATCGTTTGGTCGTTCTTTTTGATGAA : 1692128 20 : sIleValGlyLeuTrpLeuAlaAlaAspArgAsnGluGlnArgCysArgAspPheA : 38 ||||||||||||||||||||||||||||..! !||||||||| ! |||:!!|||| sIleValGlyLeuTrpLeuAlaAlaAspGluAlaGluGlnArgArgArgAsnPheA 1692129 : AATCGTAGGTCTGTGGCTAGCCGCCGACGAGGCTGAACAACGTCGGAGAAATTTCG : 1692185 39 : laLeuIleTyrThrValGlyThrLeuPheIleSerValCysIleAlaPheArgAsp : 56 ||||||||||||||:!!..!.!!:!!||||||:!! !|||||||||.!.|||||| laLeuIleTyrThrLeuAsnAlaIlePheIleAlaSerCysIleAlaMetArgAsp 1692186 : CGCTGATTTACACGCTGAACGCGATTTTTATCGCTTCGTGTATAGCAATGAGAGAT : 1692239 57 : IleTyrHisSerTrpGlyAsnPheSer >>>> Target Intron 1 >>>> : 66 ||||||:!!|||||||||||| ! !:! 1732 bp IleTyrTyrSerTrpGlyAsnValAsn++ ++ 1692240 : ATATACTATTCCTGGGGAAACGTGAACgt.........................ag : 1693999 67 : AspSerValPheIleCysCysAsnIleLeuTyrValAlaIleValLeuLeuLysIl : 84 |||!!!:!!!:!:!! ! |||||||||||||||:!!|||||||||!!!!!!||||| AspCysIleTyrValGlyCysAsnIleLeuTyrLeuAlaIleValPhePheLysIl 1694000 : GACTGCATTTACGTCGGGTGCAACATTTTATACCTAGCGATCGTTTTCTTCAAGAT : 1694055 85 : eSerValLeuTyrThrHisLysValGluPhePheAsnLeuIleThrPheThrGlnA : 103 | !|||||||||! !|||!:!:!!||||||!:!...||||||! !|||||||||. eLeuValLeuTyrLysHisArgIleGluPheTyrGlyLeuIleArgPheThrGlnG 1694056 : CCTCGTTTTGTACAAGCACAGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAG : 1694112 104 : rgAsnPheTrpArgPheTyrAsnAspProGlnGluValLeuIleIleAlaGlyCys : 121 .!!!.||||||!.!||| !! !!:!! !!!:!||| !||||||:!!:!!! !||| luLysPheTrpHisPheAspTyrAsnSerArgGluLysLeuIleLeuSerGluCys 1694113 : AGAAATTCTGGCATTTCGACTATAATTCACGGGAGAAGTTAATTTTATCCGAGTGC : 1694166 122 : LysArgIleCysAsnPheSerIleValLeuIleValPheCysAlaGlnGlyThrCy : 140 |||!:!||||||!.! !!! !|||||| !.!! !||||||.!!||||||||||| LysLysIleCysThrValPheIleValAlaPheSerPheCysThrGlnGlyThrCy 1694167 : AAGAAGATATGTACCGTTTTCATCGTTGCCTTCAGCTTCTGTACTCAGGGCACGTG : 1694223 141 : sAlaGlyTyrMetValThrProLeuIle{G} >>>> Target Intron 2 >> : 150 ||||||||||:!:|||||||||:!!:!!{!} 100 bp sAlaGlyTyrValValThrProIleLeu{A}++ 1694224 : TGCTGGTTACGTAGTGACACCTATTTTA{g}gt....................... : 1694256 151 : >> {lu}AsnIleGlyLysAsnGluSerAspArgAlaLeuProPheAsnLeuTrp : 166 { !}|||:!!|||||||||:!!|||!!:||| !||||||||||||:!!||| ++{la}AsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTrp 1694257 : ..ag{CA}AATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTGG : 1694401 167 : IleAspPheProValGlyLeuSerProTyrPheGluLeuLeuPheIleIleGln : 185 :!!|||||||||..!|||||||||||||||!:!|||:!!||||||||||||||| ValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGln++ 1694402 : GTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGgt : 1694458 186 : >>>> Target Intron 3 >>>> IleLeuCysValTyrHisValAlaThrCy : 194 409 bp ! !||||||||||||||||||!.!! !|| ++ThrLeuCysValTyrHisValGlyIleCy 1694459 : .........................agACACTTTGCGTGTACCATGTCGGTATATG : 1694894 195 : sTyrIleCysPheAspAsnLeuLeuCysIleValAsnLeuHisValAlaGlyGlnP : 213 ||||!!:||||||||||||:!!||| !!:!!:!!||||||||||||||| !|||| sTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGlnP 1694895 : TTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAAT : 1694951 214 : heArgIleLeuGlnHisArgLeuLysAsnLeu : 223 ||||||||||||||:!!|||!!!! !|||||| heArgIleLeuGlnTyrArgPheMetAsnLeu 1694952 : TTCGTATCCTTCAATACCGATTCATGAATTTG : 1694983 vulgar: AfOr75P 0 223 . KQ414915.1 1692073 1694983 + 788 M 65 195 5 0 2 I 0 1728 3 0 2 M 84 252 S 0 1 5 0 2 I 0 96 3 0 2 S 1 2 M 34 102 5 0 2 I 0 405 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1692074 1694983 788 + . gene_id 1 ; sequence AfOr75P ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1692074 1692268 . + . KQ414915.1 exonerate:protein2genome:local exon 1692074 1692268 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1692269 1692270 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1692269 1694000 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1693999 1694000 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694001 1694253 . + . KQ414915.1 exonerate:protein2genome:local exon 1694001 1694253 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694254 1694255 . + . intron_id 2 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1694254 1694353 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1694352 1694353 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694354 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694354 1694457 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1694983 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1694983 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1692074 1694983 788 + . alignment_id 1 ; Query AfOr75P ; Align 1692074 1 195 ; Align 1694001 66 252 ; Align 1694356 151 102 ; Align 1694867 185 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 603 Query range: 149 -> 398 Target range: 1706998 -> 1709249 150 : GluAsnIleGlyLysAsnGluSerAspArgAlaLeuProPheAsnLeuTrpIleAs : 168 |||!::|||||||||||||||||||||||| !||| ! !!|||!!!|||||||| GluSerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAs 1706999 : GAAAgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGA : 1707053 169 : pPheProValGlyLeuSerProTyrPheGluLeuLeuPheIleIleGln >>>> : 185 |||||||..! !:!!!!!||||||!:!|||:!!||||||! ||| pPheProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707054 : CTTTCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt..... : 1707106 186 : Target Intron 1 >>>> IleLeuCysValTyrHisValAlaThrCysTyrI : 196 276 bp :!!!!! !||| :!!|||..!! ! !!|||: ++ValPheIleValMetTyrValCysIleSerTyrL 1707107 : ....................agGTTTTTATCGTAATGTACGTTTGCATAAGCTACC : 1707413 197 : leCysPheAspAsnLeuLeuCysIleValAsnLeuHisValAlaGlyGlnPheArg : 214 !!|||.!!||||||!!!||||||!!::!!|||||||||..!||| !||||||||| euCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArg 1707414 : TTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGA : 1707467 215 : IleLeuGlnHisArgLeuLysAsnLeuValAlaAspGluGlyArgGlyAsp<-><- : 232 |||||||||:!!||||||..!|||:!! !!.!! .!.! !|||...||| IleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAspLysIl 1707468 : ATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaat : 1707524 233 : ><-><-><->ThrProArgTyrGluAsnCysCysTyrGluLysLeuArgAspCysV : 247 |||||| ! !!..!:!! ||||||! |||!!!!:!:!!|||: eSerLysLysThrProSerAsnSerAspGluCysTyrAlaLysPheLysAsnCysI 1707525 : ttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCA : 1707581 248 : alGluGlnHisGlnThrLeuIleGluTyrCysLysArgLeuGluAsnIlePheThr : 265 !!:!!|||||||||.!!|||||||||||||||!!...!|||:!!.!.:!:||| ! leGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluValPheGly 1707582 : TTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGGTGTTCGGT : 1707635 266 : ValMetValLeuGlyGlnValMetPheUnkAlaValValIleCysLeuValGlyPh : 284 :!!.!.||||||!.!||||||:!!.!! ::!:!!:!!!!:||||||! !|||!: LeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAspGlyTy 1707636 : TTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGGATA : 1707692 285 : eGlnLeuPheLeu >>>> Target Intron 2 >>>> AlaGluThrProAl : 293 ! ||| ! :!! 457 bp ! !!!:|||||| r---LeuValMet++ ++GluAspThrProIl 1707693 : T---TTGGTGATGgt.........................agGAAGATACTCCCAT : 1708173 294 : aSerLysArgAlaSerLeuValValAsnLeuGlyGlyThrPhePheGlnLeuLeuI : 312 !! !:!!||| !!!!!!!:!! !!:!!||| !||| !.!.! !|||||||||! eMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuM 1708174 : TATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGA : 1708230 313 : lePheThrTyrSerCysAspAsnLeuIleArgGlnSerValAsnValGlyAsnAla : 330 !:|||||||||||||||||| !|||||||||:!!|||:!!||||||!.!|||||| etPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAla 1708231 : TGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCT : 1708284 331 : ValPheSerGlyProTrpValAsnLeuProMetAsnLysAlaGlyAlaLeuValAr : 349 :!!!:!..! !! !!|||:!!:!!|||||||||:!!!:!:!!||| !:!!:!!|| IleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuAr 1708285 : ATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCG : 1708341 350 : gLysAsnLeuIleIleValIleMetArgSerGlnLysValCysCysLeuThrAlaG : 368 ||||:!!|||! !.!!|||||| ||||||::! ! !||||||||||||||| gLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaC 1708342 : AAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTT : 1708398 369 : lyLysPhePheProValSerLeuGluThrSerThrAla >>>> Target Intr : 381 !! !||||||||||||||||||||||||! !|||:!! 759 bp ysGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708399 : GTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt................ : 1708439 382 : on 3 >>>> ValLeuSerThrAlaMetSerTyrPheThrLeuLeuLysGlnSer : 395 :!!|||||||||||| !||||||||||||||||||::!:!!..! ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgLysGln 1708440 : .........agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTACGAAAACAA : 1709238 396 : SerLeuAsp : 398 ..! !!!: GluAlaGlu 1709239 : GAAGCAGAA : 1709249 vulgar: AfOr75P 149 398 . KQ414915.1 1706998 1709249 + 603 M 35 105 5 0 2 I 0 272 3 0 2 M 47 141 G 0 15 M 53 159 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1706999 1709249 603 + . gene_id 2 ; sequence AfOr75P ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1706999 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1706999 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 15 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709249 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709249 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1706999 1709249 603 + . alignment_id 2 ; Query AfOr75P ; Align 1706999 150 105 ; Align 1707380 185 141 ; Align 1707536 232 159 ; Align 1707695 286 9 ; Align 1708161 289 276 ; Align 1709196 381 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 596 Query range: 150 -> 398 Target range: 1688056 -> 1690091 151 : AsnIleGlyLysAsnGluSerAspArgAlaLeuProPheAsnLeuTrpIleAspPh : 169 |||!!:.!!::!|||:!!|||||||||!.!|||||||||!!.:!!|||:!!|||!: AsnMetSerArgAsnLysSerAspArgValLeuProPheLysMetTrpValAspTr 1688057 : AATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTGGGTCGATTG : 1688111 170 : eProValGlyLeuSerProTyrPheGluLeuLeuPheIleIleGln >>>> Tar : 185 :|||:!!..! !!!!||||||!:!||||||:!!|||! !.!!||| pProLeuSerAspThrProTyrTyrGluLeuMetPheThrPheGln++ 1688112 : GCCGCTATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAGgt........ : 1688161 186 : get Intron 1 >>>> IleLeuCysValTyrHisValAlaThrCysTyrIleC : 197 179 bp ||||||||||||!!.:!!!.!.!!..!||||||| ++AlaLeuCysValTyrGlnIleGlyAlaAlaTyrIleC 1688162 : .................agGCGCTGTGCGTGTATCAAATCGGCGCCGCCTATATCT : 1688374 198 : ysPheAspAsnLeuLeuCysIleValAsnLeuHisValAlaGlyGlnPheArgIle : 215 ||! !|||!..!!!!!!|||!!::!!|||:!!|||||| ! !!|||||||||||| ysSerAspThrPhePheCysMetLeuAsnMetHisValIleCysGlnPheArgIle 1688375 : GCTCCGACACGTTTTTCTGCATGCTGAACATGCACGTGATCTGCCAGTTCCGTATA : 1688428 216 : LeuGlnHisArgLeuLysAsnLeu<->ValAlaAspGluGlyArgGlyAspThrPr : 233 |||.!.:!!|||||| !|||:!! !!.! !!!:! !||| !:!!! ! ! LeuAsnTyrArgLeuLeuAsnMetTrpProValIleAspGluArgThrAsnMetTh 1688429 : CTAAATTACAGACTGTTGAACATGTGGCCGGTCATCGACGAGCGAACGAACATGAC : 1688485 234 : oArgTyrGluAsnCysCysTyrGluLysLeuArgAspCysValGluGlnHisGlnT : 252 !..!||| !||| |||||| ||||||! !||||||:!!:!!.!.||||||: rGluTyrThrAsnLysCysTyrThrLysLeuIleAspCysIleLysAsnHisGlnS 1688486 : CGAATACACGAACAAATGTTACACCAAGCTGATAGATTGCATCAAAAATCATCAGT : 1688542 253 : hrLeuIleGluTyrCysLysArgLeuGluAsnIlePheThrValMetValLeuGly : 270 !!|||||||||!:!||| !!:!|||||||||:!:!:!|||:!!! :!!|||||| erLeuIleGluPheCysValLysLeuGluAsnValTyrThrLeuThrIleLeuGly 1688543 : CGTTGATCGAGTTCTGCGTGAAACTCGAGAACGTGTACACGTTGACTATACTCGGC : 1688596 271 : GlnValMetPheUnkAlaValValIleCysLeuValGlyPheGlnLeuPheLeu : 289 !!.:!!:!! !! ::!:!!:!!!!:|||!!!! ! !!:!:!!:!! !!||| HisIleValValPheSerLeuLeuMetCysPheAspThrTyrGluValValLeu++ 1688597 : CACATAGTGGTCTTCAGCTTGTTGATGTGCTTCGACACGTACGAGGTAGTTCTGgt : 1688653 290 : >>>> Target Intron 2 >>>> AlaGluThrProAlaSerLysArgAlaSe : 298 816 bp |||:!!..!|||.!!!!!! !||| !! ++AlaLysValProThrThrThrArgLeuIl 1688654 : .........................agGCAAAGGTACCTACCACGACGCGCCTCAT : 1689496 299 : rLeuValValAsnLeuGlyGlyThrPhePheGlnLeuLeuIlePheThrTyrSerC : 317 !!!!:!! !!:!!:!! !|||!:!|||.!!!..::::::...||||||||||||| ePheLeuPheHisMetIleGlySerPheIleHisIleIlePhePheThrTyrSerC 1689497 : ATTCTTATTCCACATGATCGGTAGCTTCATCCacataattttcttcacgtACAGTT : 1689553 318 : ysAspAsnLeuIleArgGlnSerValAsnValGlyAsnAlaValPheSerGlyPro : 335 ||! !..!||||||..!:!!|||:!!:!!:!!!.!!..|||..!!:!:!!||| ! ysGlyGlyLeuIleGluGluSerMetAspIleAlaThrAlaThrTyrAlaGlyMet 1689554 : GTGGTGGTTTGATAGAAGAGAGTATGGATATTGCAACAGCAACGTATGCAGGAATG : 1689607 336 : TrpValAsnLeuProMetAsnLysAlaGlyAlaLeuValArgLysAsnLeuIleIl : 354 |||..! !|||||||||||||||!.!||| !:!!:!!||| !|||:!!! :! TrpThrValLeuProMetAsnLysValGlyLysMetIleArgGlyAsnMetLysLe 1689608 : TGGACGGTTTTGCCAATGAATAAAGTTGGCAAAATGATACGAGGAAATATGAAGTT : 1689664 355 : eValIleMetArgSerGlnLysValCysCysLeuThrAlaGlyLysPhePheProV : 373 !:!!! !:!:|||||| !:!! !||||||:!!||||||||| !|||||||||| uMetThrValArgSerLeuGlnProCysCysIleThrAlaGlyGlyPhePheProV 1689665 : AATGACCGTAAGGTCGTTGCAACCGTGTTGCATAACTGCTGGTGGATTCTTTCCTG : 1689721 374 : alSerLeuGluThrSerThrAla >>>> Target Intron 3 >>>> ValL : 382 ||||||||:!!|||:!!|||||| 293 bp :!!: alSerLeuLysThrAlaThrAla++ ++LeuM 1689722 : TCTCCTTGAAAACTGCTACCGCGgt.........................agCTAA : 1690041 383 : euSerThrAlaMetSerTyrPheThrLeuLeuLysGlnSerSerLeuAsp : 398 !!|||:!!.!!||||||||||||||||||:!!!:!:!!!!!||| !!!: etSerSerThrMetSerTyrPheThrLeuMetArgGluArgSerAlaGlu 1690042 : TGAGTTCCACAATGTCGTATTTCACGCTCATGAGAGAGAGATCGGCTGAA : 1690091 vulgar: AfOr75P 150 398 . KQ414915.1 1688056 1690091 + 596 M 34 102 5 0 2 I 0 175 3 0 2 M 39 117 G 0 3 M 65 195 5 0 2 I 0 812 3 0 2 M 92 276 5 0 2 I 0 289 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688057 1690091 596 + . gene_id 3 ; sequence AfOr75P ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688057 1688158 . + . KQ414915.1 exonerate:protein2genome:local exon 1688057 1688158 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688159 1688160 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688159 1688337 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1688336 1688337 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1688338 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688338 1688652 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690091 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690091 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688057 1690091 596 + . alignment_id 3 ; Query AfOr75P ; Align 1688057 151 102 ; Align 1688338 185 117 ; Align 1688458 224 195 ; Align 1689469 289 276 ; Align 1690038 381 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 431 Query range: 220 -> 395 Target range: 1702148 -> 1703653 221 : LysAsnLeuValAlaAspGluGlyArgGlyAspThrProArgTyrGluAsnCysCy : 239 |||.!.:!!! !! !:!!|||..!!!!!.!! ! ! !!|||!:!! !.!. !|| LysGlnValAspAspAsnGluSerSerAlaAlaLeuSerArgPheAlaGluAsnCy 1702149 : AAGCAAGTAGATGACAATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTG : 1702203 240 : sTyrGluLysLeuArgAspCysValGluGlnHisGlnThrLeuIleGluTyrCysL : 258 ||||:!! !!!!!:!:!!||||||..!|||||||||!.!! !||| !|||||| sTyrLysAlaPheLysAsnCysValArgGlnHisGlnAsnHisIleThrTyrCysH 1702204 : TTATAAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCATATCACGTACTGTC : 1702260 259 : ysArgLeuGluAsnIlePheThrValMetValLeuGlyGlnValMetPheUnkAla : 276 ! ||||||.!..!.||||||||||||!!:|||||||||!!.:!!:!: !! ::! isArgLeuAsnGluIlePheThrValIleValLeuGlyHisIleLeuValPheSer 1702261 : ACAGATTGAACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGC : 1702314 277 : ValValIleCysLeuValGlyPheGlnLeuPheLeu >>>> Target Intron : 289 :!!:!!|||||||||||||||||||||:!!.!!:!! 607 bp LeuLeuIleCysLeuValGlyPheGlnValLeuVal++ 1702315 : CTTCTGATATGTCTGGTTGGATTCCAAGTGCTCGTGgt.................. : 1702355 290 : 1 >>>> AlaGluThrProAlaSerLysArgAlaSerLeuValValAsnLeuGl : 304 .!! ..! !! !!:!!!:!||| !!!!!!!||| !!:!!:!!! -+ThrProValThrProAlaArgArgLeuThrPheValPheHisIleVa 1702356 : .......ggACACCTGTGACTCCAGCGAGGCGGCTTACTTTCGTATTTCACATAGT : 1703005 305 : yGlyThrPhePheGlnLeuLeuIlePheThrTyrSerCysAspAsnLeuIleArgG : 323 !|||!:!.!.! !|||||||||:!!||||||||||||||||||..!||||||..!: lGlySerLeuCysGlnLeuLeuLeuPheThrTyrSerCysAspGlyLeuIleGluG 1703006 : CGGTAGTCTATGCCAACTATTGCTATTTACCTATAGCTGCGACGGTCTGATAGAGG : 1703062 324 : lnSerValAsnValGlyAsnAlaValPheSerGlyProTrpValAsnLeuProMet : 341 !!|||..!|||:!!|||!.!|||:!!!:! !|||||||||:!!:!!||||||||| luSerThrAsnIleGlyThrAlaIleTyrLeuGlyProTrpIleHisLeuProMet 1703063 : AAAGTACGAACATCGGGACTGCGATATACCTCGGGCCTTGGATACATCTGCCAATG : 1703116 342 : AsnLysAlaGlyAlaLeuValArgLysAsnLeuIleIleValIleMetArgSerGl : 360 :!!||||||||| ! !:!!|||!:!:!!|||! !!!:||||||:!:||||||:: AspLysAlaGlyArgArgLeuArgArgAspLeuThrMetValIleValArgSerAr 1703117 : GACAAAGCCGGCAGAAGGTTGAGAAGAGACTTGACAATGGTCATCGTAAGATCGAG : 1703173 361 : nLysValCysCysLeuThrAlaGlyLysPhePheProValSerLeuGluThrSerT : 379 !||| ! !!||||||||||||.!! !||||||||||||||||||||||||!!!| gLysSerSerCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrCysT 1703174 : AAAATCGAGCTGTTTAACTGCCAGCGGATTCTTTCCTGTTTCGCTGGAAACTTGTA : 1703230 380 : hrAla >>>> Target Intron 2 >>>> ValLeuSerThrAlaMetSerT : 388 ||.!! 373 bp |||||||||||||||||||||| hrThr++ ++ValLeuSerThrAlaMetSerT 1703231 : CCACGgt.........................agGTGCTCAGTACAGCGATGTCAT : 1703630 389 : yrPheThrLeuLeuLysGlnSer : 395 ||||||||||||||!:!!!.||| yrPheThrLeuLeuArgHisSer 1703631 : ACTTCACTTTATTAAGGCACTCT : 1703653 vulgar: AfOr75P 220 395 . KQ414915.1 1702148 1703653 + 431 M 68 204 5 0 2 I 0 603 3 0 2 M 92 276 5 0 2 I 0 369 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702149 1703653 431 + . gene_id 4 ; sequence AfOr75P ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702149 1702352 . + . KQ414915.1 exonerate:protein2genome:local exon 1702149 1702352 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1702353 1702354 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1702353 1702959 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702958 1702959 . + . intron_id 0 ; splice_site "GG" KQ414915.1 exonerate:protein2genome:local cds 1702960 1703235 . + . KQ414915.1 exonerate:protein2genome:local exon 1702960 1703235 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1703236 1703237 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1703236 1703608 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1703607 1703608 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1703609 1703653 . + . KQ414915.1 exonerate:protein2genome:local exon 1703609 1703653 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702149 1703653 431 + . alignment_id 4 ; Query AfOr75P ; Align 1702149 221 204 ; Align 1702960 289 276 ; Align 1703609 381 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 421 Query range: 149 -> 398 Target range: 1681722 -> 1683066 150 : GluAsnIleGlyLysAsnGluSerAspArgAlaLeuProPheAsnLeuTrpIle<- : 168 |||||||||||||||!:!!!:..!!!:||| !||||||||| !!! ! :!: GluAsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPh 1681723 : gaGAACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTT : 1681777 169 : >AspPheProValGlyLeuSerProTyrPheGluLeuLeuPheIleIleGln >> : 185 :!!!!.|||..!..!|||!!!||||||:::|||:::||||||:!:|||:!! eAsnLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681778 : TAACTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt.. : 1681833 186 : >> Target Intron 1 >>>> IleLeuCysValTyrHisValAlaThrCysT : 195 120 bp ! !|||! !||| ||| !!.!! !|||! ++ThrLeuSerValValHisSerGlyIleCysP 1681834 : .......................agACATTATCTGTGGTGCATTCGGGAATTTGTT : 1681981 196 : yrIleCysPheAspAsnLeuLeuCysIleValAsnLeuHisValAlaGlyGlnPhe : 213 :! !||||||||||||!!!|||||||||:!!!:!:!!||||||!.!||||||||| heCysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPhe 1681982 : TCTGTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTT : 1682035 214 : ArgIleLeuGlnHisArgLeuLysAsnLeuValAlaAspGluGlyArgGlyAspTh : 232 !:!|||||||||:!!!:!|||:!!!..:!!:!!::!!!::!: ...:: LysIleLeuGlnAsnLysLeuGlnThrValLeuSerGluLys---------SerSe 1682036 : AAGATTTTACAAAACAAACTCCAAACAGTATTGAGTGAGAAa---------tcttc : 1682083 233 : rProArgTyrGluAsnCysCysTyrGluLysLeuArgAspCysValGluGlnHisG : 251 : ... ... ! |||:!!:!!!!!!:!!!:||||||:!! ! |||! rLysGluLysSerAlaGlyLeuTyrLysGluPheLysGluCysValGlnTyrHisH 1682084 : gaaagaaaaatcagctGGACTGTATAAAGAGTTCAAGGAGTGCGTACAGTATCATC : 1682140 252 : lnThrLeuIleGluTyrCysLysArgLeuGluAsnIlePheThrValMetValLeu : 269 !. !|||:!!..!||| ::::::|||||| :!!||| !||| !:!!:!! isLeuLeuLeuSerTyrValGluLysLeuGluTyrValPheCysValProLeuMet 1682141 : ATTTGCTTCTTTCGtacgtggaaaaattggaatacgTATTTTGTGTCCCGTTGATG : 1682194 270 : GlyGlnValMetPheUnkAlaValValIleCysLeuValGlyPheGlnLeuPheLe : 288 !|||:!!:!! ! ...::!:!!|||:!:|||:!! !||||||||||||! || IleGlnLeuLeuValSerSerIleValLeuCysValSerGlyPheGlnLeuSerLe 1682195 : ATTCAATTGCTGGTGTCTAGCATAGTTCTGTGCGTCTCGGGGTTTCAACTATCATT : 1682251 289 : u >>>> Target Intron 2 >>>> AlaGluThrProAlaSerLysArgAl : 297 | 285 bp !.!.!. ! ! !! !|||||| u++ ++ValAsnGlyValLeuMetLysArgLe 1682252 : Ggt.........................agGTGAACGGTGTATTGATGAAACGATT : 1682563 298 : aSerLeuValValAsnLeuGlyGlyThrPhePheGlnLeuLeuIlePheThrTyrS : 316 !! !!!!:!! ! !!!!! !||| ! ! .!.|||:::...:::...||| ! uLeuPheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePheLeuIleThrLeuA 1682564 : GTTGTTCCTAAATTACTTTCTCGGTGGAGTGATacagatatttttaataacccTAA : 1682620 317 : erCysAspAsnLeuIleArgGlnSerValAsnValGlyAsnAlaValPheSerGly : 334 :!|||:!!:!!:!!!!:..!||||||! ! !:!!|||!..|||:!!!:!||| !! snCysAsnAspIleMetGluGlnSerGlyAlaIleGlyThrAlaIleTyrSerCys 1682621 : ATTGCAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAGCGATCTACAGTTGT : 1682674 335 : ProTrpValAsnLeuProMetAsnLysAlaGlyAlaLeuValArgLysAsnLeuIl : 353 !|||! !!.. ||| !!!! ||||||:!!:!!!! AsnTrpGluArgAsnValTyrAsnHisPheTyrGlnPhe---ArgLysAspMetMe 1682675 : AATTGGGAGAGGAAtgtttataatcatttttaccAGTTC---AGAAAGGATATGAT : 1682728 354 : eIleValIleMetArgSerGlnLysValCysCysLeuThrAlaGlyLysPhePheP : 372 :||||||!!::!:|||:!!:!!::: !|||! !:!!:!!|||!.!|||||||||| tIleValMetValArgAlaLysArgProCysTyrIleSerAlaAlaLysPhePheP 1682729 : GATTGTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGCAGCGAAATTCTTTC : 1682785 373 : roValSerLeuGluThrSerThrAla >>>> Target Intron 3 >>>> V : 381 ||:!!|||||||||:!!! !||| 201 bp | roIleSerLeuGluSerPheThrLys++ ++V 1682786 : CAATCTCCCTTGAATCGTTCACGAaggt.........................agG : 1683013 382 : alLeuSerThrAlaMetSerTyrPheThrLeuLeuLysGlnSerSerLeuAsp : 398 ||||||||.!!.!! ||||||!:!|||||||||::: !! !..!:!!||| alLeuSerAlaThrAlaSerTyrTyrThrLeuLeuArgThrMetGluMetAsp 1683014 : TGTTAAGTGCAACAGCATCTTATTATACACTGCTGCGTACAATGGAAATGGAC : 1683066 vulgar: AfOr75P 149 398 . KQ414915.1 1681722 1683066 + 421 M 18 54 G 0 3 M 17 51 5 0 2 I 0 116 3 0 2 M 43 129 G 3 0 M 58 174 5 0 2 I 0 281 3 0 2 M 59 177 G 1 0 M 32 96 5 0 2 I 0 197 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681723 1683066 421 + . gene_id 5 ; sequence AfOr75P ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681723 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681723 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682253 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682253 . + . insertions 0 ; deletions 3 KQ414915.1 exonerate:protein2genome:local splice5 1682254 1682255 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1682254 1682538 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1682537 1682538 . + . intron_id 1 ; splice_site "aG" KQ414915.1 exonerate:protein2genome:local cds 1682539 1682811 . + . KQ414915.1 exonerate:protein2genome:local exon 1682539 1682811 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1682812 1682813 . + . intron_id 3 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1682812 1683012 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1683011 1683012 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1683013 1683066 . + . KQ414915.1 exonerate:protein2genome:local exon 1683013 1683066 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681723 1683066 421 + . alignment_id 5 ; Query AfOr75P ; Align 1681723 150 54 ; Align 1681780 168 51 ; Align 1681951 185 129 ; Align 1682080 231 174 ; Align 1682539 289 177 ; Align 1682716 349 96 ; Align 1683013 381 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 402 Query range: 239 -> 389 Target range: 1695055 -> 1695920 240 : TyrGluLysLeuArgAspCysValGluGlnHisGlnThrLeuIleGluTyrCysLy : 258 ||| !:!!|||!:!..!||||||:!! ! ||||||.!!|||! !! |||||||| TyrLeuGlnLeuLysSerCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLy 1695056 : TACTTACAATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAA : 1695110 259 : sArgLeuGluAsnIlePheThrValMetValLeuGlyGlnValMetPheUnkAlaV : 277 |!:!|||||||||||||||:!!:!!:!:|||||||||||||||:!:||| |||: sLysLeuGluAsnIlePheSerLeuLeuValLeuGlyGlnValLeuPheLeuAlaM 1695111 : AAAGTTGGAGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCA : 1695167 278 : alValIleCysLeuValGlyPheGlnLeuPheLeuAlaGluThrProAlaSer{L} : 295 !!|||:!!||||||||||||!:!||||||||||||!.!... ! ! !!!!{:} etValLeuCysLeuValGlyTyrGlnLeuPheLeuValSerLeuGluArgThr{A} 1695168 : TGGTACTTTGCCTCGTGGGATATCAGCTATTTCTGGTAAGTTTGGAACGTACT{C} : 1695221 296 : >>>> Target Intron 1 >>>> {ys}ArgAlaSerLeuValValAsnLe : 303 415 bp {:!}!.!!.!.!!||||||:!!||||| +- --{rg}AsnValGlyLeuValLeuAsnLe 1695222 : ga.........................ga{GA}AACGTCGGATTGGTACTCAACCT : 1695660 304 : uGlyGlyThrPhePheGlnLeuLeuIlePheThrTyrSerCysAspAsnLeuIleA : 322 |!.!||||||!!.! !||||||!!!!!:||||||||||||||||||..!|||! !| uAlaGlyThrLeuCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrA 1695661 : GGCAGGCACTTTGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAA : 1695717 323 : rgGlnSerValAsnValGlyAsnAlaValPheSerGlyProTrpValAsnLeuPro : 340 ||:!!|||:!!:!!|||.!!!..|||||||||:!! !!||||||!.!||||||||| rgGluSerMetAspValSerArgAlaValPheAlaArgProTrpAlaAsnLeuPro 1695718 : GAGAGAGCATGGACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCA : 1695771 341 : MetAsnLysAlaGlyAlaLeuValArgLysAsnLeuIleIleValIleMetArgSe : 359 |||:!!!:! !||| ! !||||||:!!!:!:!!:!!!!:|||||||||||||| MetAspArgAsnGlyLysSerValArgGlnSerMetLeuMetValIleMetArgSe 1695772 : ATGGATAGAAATGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTC : 1695828 360 : rGlnLysValCysCysLeuThrAlaGlyLysPhePheProValSerLeuGluThrS : 378 |.!.!:! !|||||||||||||||.!! !||||||||||||||||||||||||! rAsnArgCysCysCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrT 1695829 : GAACAGGTGTTGCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTT : 1695885 379 : erThrAlaValLeuSerThrAlaMetSerTyrPhe : 389 !|||!.!|||:!!!:! !! !! !||| !||| yrThrGlyValIleAsn***AspThrSerIlePhe 1695886 : ACACTGGGGTAATTAATTAAGATACGTCCATTTTT : 1695920 vulgar: AfOr75P 239 389 . KQ414915.1 1695055 1695920 + 402 M 55 165 S 0 1 5 0 2 I 0 411 3 0 2 S 1 2 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1695056 1695920 402 + . gene_id 6 ; sequence AfOr75P ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1695056 1695221 . + . KQ414915.1 exonerate:protein2genome:local exon 1695056 1695221 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695222 1695223 . + . intron_id 1 ; splice_site "GA" KQ414915.1 exonerate:protein2genome:local intron 1695222 1695636 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1695635 1695636 . + . intron_id 0 ; splice_site "GA" KQ414915.1 exonerate:protein2genome:local cds 1695637 1695920 . + . KQ414915.1 exonerate:protein2genome:local exon 1695637 1695920 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1695056 1695920 402 + . alignment_id 6 ; Query AfOr75P ; Align 1695056 240 165 ; Align 1695639 296 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 251 Query range: 145 -> 223 Target range: 1711222 -> 1712002 146 : ThrProLeuIleGluAsnIleGlyLysAsnGluSerAspArgAlaLeuProPheAs : 164 |||! !:!! !! !|||||||||!:!||||||||||||||| !|||||||||!! ThrArgValSerValAsnIleGlyArgAsnGluSerAspArgIleLeuProPheLy 1711223 : ACTCGTGTTTCAGTGAATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAA : 1711277 165 : nLeuTrpIleAspPheProValGlyLeuSerProTyrPheGluLeuLeuPheIleI : 183 .:!!|||||||||.!.|||..!..!:!!!!!||||||||||||:::...||| : sMetTrpIleAspIleProThrSerMetThrProTyrPheGluIlePhePheThrL 1711278 : AATGTGGATTGATATACCGACATCGATGACACcgtattttgaaatattcttcaccT : 1711334 184 : leGln >>>> Target Intron 1 >>>> IleLeuCysValTyrHisValA : 192 !!||| 546 bp :!!|||! !!.!|||!!.:!!! euGln++ ++ValLeuSerAlaTyrGlnIleG 1711335 : TACAGgt.........................agGTTTTATCCGCGTATCAAATTG : 1711907 193 : laThrCysTyrIleCysPheAspAsnLeuLeuCysIleValAsnLeuHisValAla : 210 .!..! !!||| !||||||||||||:!!|||||||||:!!|||||||||:!!||| lyValSerTyrGlyCysPheAspAsnValLeuCysIleMetAsnLeuHisLeuAla 1711908 : GCGTGAGTTACGGTTGCTTCGACAACGTTCTATGCATCATGAACCTACACTTGGCC : 1711961 211 : GlyGlnPheArgIleLeuGlnHisArgLeuLysAsnLeu : 223 !||||||||||||||||||||||||||| !|||:!! ThrGlnPheArgIleLeuGlnHisArgLeuValAsnIle 1711962 : ACTCAGTTTCGAATACTGCAACATAGACTGGTGAATATA : 1712002 vulgar: AfOr75P 145 223 . KQ414915.1 1711222 1712002 + 251 M 39 117 5 0 2 I 0 542 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711223 1712002 251 + . gene_id 7 ; sequence AfOr75P ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1711223 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711223 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712002 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712002 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711223 1712002 251 + . alignment_id 7 ; Query AfOr75P ; Align 1711223 146 117 ; Align 1711886 185 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 244 Query range: 292 -> 401 Target range: 1712381 -> 1712708 293 : AlaSerLysArgAlaSerLeuValValAsnLeuGlyGlyThrPhePheGlnLeuLe : 311 !.!.!!|||!:! ...... :::|||!.!||| !.!.! !|||||||| ValGlyLysGlnMetIlePheThrPheHisLeuAlaGlyCysMetCysGlnLeuLe 1712382 : GTGGGTAAACAGAtgattttcacgtttcacctAGCGGGATGTATGTGTCAATTGCT : 1712436 312 : uIlePheThrTyrSerCysAspAsnLeuIleArgGlnSerValAsnValGlyAsnA : 330 |!!:|||||||||||||||||| !:!!|||! !:!!|||:!!|||||| !.!.| uMetPheThrTyrSerCysAspCysIleIleThrGluSerLeuAsnValThrGluA 1712437 : GATGTTTACGTACAGCTGCGATTGTATAATAACGGAAAGTTTGAACGTGACGGAAG : 1712493 331 : laValPheSerGlyProTrpValAsnLeuProMetAsnLysAlaGlyAlaLeuVal : 348 |||||!:!..!||||||||| !..!|||||||||!:!! ! !||| !:!!:!! laValTyrAspGlyProTrpProArgLeuProMetSerThrArgGlyArgMetIle 1712494 : CGGTGTACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGAAGAATGATA : 1712547 349 : ArgLysAsnLeuIleIleValIleMetArgSerGlnLysValCysCysLeuThrAl : 367 ||||||:!!||||||:!!||||||!!:||||||::! ! !|||||||||||||| ArgLysAspLeuIleLeuValIleIleArgSerArgValProCysCysLeuThrAl 1712548 : AGGAAGGATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTGCTTGACCGC : 1712604 368 : aGlyLysPhePheProValSerLeuGluThrSerThrAlaValLeuSerThrAlaM : 386 | !! !|||||| !:!!||||||||||||! !||| !|||:!!..!:!! ! aArgGlyPhePheValIleSerLeuGluThrTyrThrLysValIleAspSerLeuS 1712605 : CAGAGGATTCTTCGTAATATCTTTGGAAACGTATACGAAGGTAATTGACTCTCTGT : 1712661 387 : etSerTyrPheThrLeuLeuLysGlnSerSerLeuAspAlaAspAsn : 401 :!!! .!! !! !! !|||!::.!!!.!:!! |||!!:!:! erAlaLeuLeuCysArgCysLysArgGlyLysIle***AlaGluSer 1712662 : CTGCGTTGCTTTGTCGTTGTAAACGCGGAAAGATATGAGCTGAGAGT : 1712708 vulgar: AfOr75P 292 401 . KQ414915.1 1712381 1712708 + 244 M 109 327 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712382 1712708 244 + . gene_id 8 ; sequence AfOr75P ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1712382 1712708 . + . KQ414915.1 exonerate:protein2genome:local exon 1712382 1712708 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712382 1712708 244 + . alignment_id 8 ; Query AfOr75P ; Align 1712382 293 327 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 235 Query range: 147 -> 223 Target range: 1699025 -> 1699752 148 : LeuIleGluAsnIleGlyLysAsnGluSerAspArgAlaLeuProPheAsnLeuTr : 166 :!!:!! |||||||||:::|||...|||||||||!.!||||||||||||:!!|| IleLeuAlaAsnIleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTr 1699026 : ATTTTAgcaaatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTG : 1699080 167 : pIleAspPheProValGlyLeuSerProTyrPhe{Gl} >>>> Target Intr : 178 |:!!|||!!.|||:!!..!:!!|||||| !:!{||} 499 bp pValAspLeuProLeuSerValSerProThrTyr{Gl}-- 1699081 : GGTTGATTTGCCGCTGTCTGTGTCACCAACGTAC{GA}aa................ : 1699120 179 : on 1 >>>> {u}LeuLeuPheIleIleGlnIleLeuCysValTyrHisValAla : 192 {|} !!!! ! .!! !|||:!!|||! !:!!|||||||||!.! ++{u}AspPheValPheAlaGlnValLeuSerLeuTyrHisValGly 1699121 : .........ag{A}GATTTTGTGTTTGCACAGGTTCTGTCTTTGTACCACGTTGGT : 1699657 193 : ThrCysTyrIleCysPheAspAsnLeuLeuCysIleValAsnLeuHisValAlaGl : 211 ..!||||||||||||||||||||||||||||||:!::!!|||||||||!.!||| ValCysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaTh 1699658 : GTATGTTACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTAC : 1699714 212 : yGlnPheArgIleLeuGlnHisArgLeuLysAsnLeu : 223 !||||||||||||||||||:!!||||||..!|||||| rGlnPheArgIleLeuGlnTyrArgLeuSerAsnLeu 1699715 : TCAATTTCGTATACTGCAATACAGGTTATCGAACTTG : 1699752 vulgar: AfOr75P 147 223 . KQ414915.1 1699025 1699752 + 235 M 30 90 S 0 2 5 0 2 I 0 495 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699026 1699752 235 + . gene_id 9 ; sequence AfOr75P ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1699026 1699117 . + . KQ414915.1 exonerate:protein2genome:local exon 1699026 1699117 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699118 1699119 . + . intron_id 1 ; splice_site "AA" KQ414915.1 exonerate:protein2genome:local intron 1699118 1699616 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699615 1699616 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699617 1699752 . + . KQ414915.1 exonerate:protein2genome:local exon 1699617 1699752 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699026 1699752 235 + . alignment_id 9 ; Query AfOr75P ; Align 1699026 148 90 ; Align 1699618 179 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 203 Query range: 65 -> 149 Target range: 1698547 -> 1698799 66 : AspSerValPheIleCysCysAsnIleLeuTyrValAlaIleValLeuLeuLysIl : 84 |||!!!!.!!:!! !..!||||||||||||! !:!! !!!:||||||||||||:! AspCysAlaTyrThrAlaCysAsnIleLeuCysLeuIleMetValLeuLeuLysLe 1698548 : gACTGTGCTTACACCGCTTGTAACATTCTCTGCCTGATTATGGTACTGTTAAAGCT : 1698602 85 : eSerValLeuTyrThrHisLysValGluPhePheAsnLeuIleThrPheThrGlnA : 103 :! !|||:!!!:!! !|||!:! !||||||.!!.!.|||:::...::: : uPheValValPheIleHisArgLysGluPheIleGluLeuLeuValTyrMetTyrL 1698603 : GTTCGTTGTATTCATACACAGGAAAGAATTCATCGAACTgcttgtatatatgtaca : 1698659 104 : rgAsnPheTrpArgPheTyrAsnAspProGlnGluValLeuIleIleAlaGlyCys : 121 ::|||||||||..!.!! !! !!||| !.!.|||:!!|||:!::!: !! !||| ysAsnPheTrpHisLeuAsnTyrAspCysAsnGluLeuLeuLeuLeuGlnAspCys 1698660 : aaaatttttggcACCTCAATTACGATTGCAACGAACTACTACTGCTGCAAGACTGC : 1698713 122 : LysArgIleCysAsnPheSerIleValLeuIleValPheCysAlaGlnGlyThrCy : 140 !:!|||||| !!!.!.!.!!!|||..!|||||| !|||||||||||||||||| ArgArgIleSerThrIleCysIleThrLeuIleAsnPheCysAlaGlnGlyThrIl 1698714 : AGAAGAATTAGCACTATATGTATCACGTTGATTAACTTCTGTGCTCAAGGCACAAT : 1698770 141 : sAlaGlyTyrMetValThrProLeuIle : 149 !!.!.!!|||:!!:!!||||||:!!||| eValSerTyrValLeuThrProIleIle 1698771 : TGTCAGCTACGTGCTAACACCTATTATA : 1698799 vulgar: AfOr75P 65 149 . KQ414915.1 1698547 1698799 + 203 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1698548 1698799 203 + . gene_id 10 ; sequence AfOr75P ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1698548 1698799 . + . KQ414915.1 exonerate:protein2genome:local exon 1698548 1698799 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1698548 1698799 203 + . alignment_id 10 ; Query AfOr75P ; Align 1698548 66 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 6 -> 68 Target range: 1697521 -> 1697707 7 : LysAspIleSerIleIleTrpThrSerPheLeuMetLysIleValGlyLeuTrpLe : 25 ||||||.!!:!!:!::!! !||||||||||||||||||||||||||||||||||| LysAspPheAlaLeuLeuMetThrSerPheLeuMetLysIleValGlyLeuTrpLe 1697522 : AAAGATTTTGCTCTGTTAATGACGTCGTTTTTAATGAAGATCGTCGGTCTTTGGTT : 1697576 26 : uAlaAlaAspArgAsnGluGlnArgCysArgAspPheAlaLeuIleTyrThrValG : 44 |||| !|||!!!!!.|||:!!||| ||| !:!.!!|||||||||||||||! uAlaLysAspSerLysGluGluArgLysArgArgTyrThrLeuIleTyrThrValV 1697577 : AGCGAAAGACAGCAAGGAGGAACGCAAGCGTCGGTACACTTTGATCTATACGGTGG : 1697633 45 : lyThrLeuPheIleSerValCysIleAlaPheArgAspIleTyrHisSerTrpGly : 62 !.!!:!!!!..!!.!!|||!! :!: !|||||||||.!!|||:!!|||||| ! alAlaIleLeuPheGlyValTrpValGlnPheArgAspPheTyrTyrSerTrpPro 1697634 : TCGCGATTTTGTTTGGAGTGTGGGTGCAGTTCAGAGACTTCTATTACTCCTGGCCG : 1697687 63 : AsnPheSerAspSerVal : 68 ||||||.!!! |||:!! AsnPheGlyValSerLeu 1697688 : AATTTTGGCGTGAGTTTG : 1697707 vulgar: AfOr75P 6 68 . KQ414915.1 1697521 1697707 + 180 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1697522 1697707 180 + . gene_id 11 ; sequence AfOr75P ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1697522 1697707 . + . KQ414915.1 exonerate:protein2genome:local exon 1697522 1697707 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1697522 1697707 180 + . alignment_id 11 ; Query AfOr75P ; Align 1697522 7 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 168 Query range: 183 -> 223 Target range: 1702013 -> 1702133 184 : GlnIleLeuCysValTyrHisValAlaThrCysTyrIleCysPheAspAsnLeuLe : 202 |||:!!|||! !:!!|||||||||!.!..!|||||||||||||||||||||||||| GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 203 : uCysIleValAsnLeuHisValAlaGlyGlnPheArgIleLeuGlnHisArgLeuL : 221 ||||:!::!!|||||||||!.!||| !||||||||||||||||||:!!||||||. uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 222 : ysAsnLeu : 223 .!|||||| erAsnLeu 1702126 : CGAACTTG : 1702133 vulgar: AfOr75P 183 223 . KQ414915.1 1702013 1702133 + 168 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1702133 168 + . gene_id 12 ; sequence AfOr75P ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702014 1702133 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702133 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1702133 168 + . alignment_id 12 ; Query AfOr75P ; Align 1702014 184 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 220 -> 288 Target range: 1699767 -> 1699971 221 : LysAsnLeuValAlaAspGluGlyArgGlyAspThrProArgTyrGluAsnCysCy : 239 |||.!.:!!! !! !:!!|||..!!!!!.!! ! ! !!|||!:!! !.!. !|| LysGlnValAspAspAsnGluSerSerAlaAlaLeuSerArgPheAlaGluAsnCy 1699768 : AAGCAAGTAGATGACAATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTG : 1699822 240 : sTyrGluLysLeuArgAspCysValGluGlnHisGlnThrLeuIleGluTyrCysL : 258 ||||:!! !!!!!:!:!!||||||..!|||||||||!.!! !||| !|||||| sTyrLysAlaPheLysAsnCysValArgGlnHisGlnAsnHisIleThrTyrCysH 1699823 : TTATAAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCATATCACGTACTGTC : 1699879 259 : ysArgLeuGluAsnIlePheThrValMetValLeuGlyGlnValMetPheUnkAla : 276 ! ||||||.!..!.||||||||||||!!:|||||||||!!.:!!:!: !! ::! isArgLeuAsnGluIlePheThrValIleValLeuGlyHisIleLeuValPheSer 1699880 : ACAGATTGAACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGC : 1699933 277 : ValValIleCysLeuValGlyPheGlnLeuPheLeu : 288 :!!:!!|||||||||||||||||||||:!!.!!:!! LeuLeuIleCysLeuValGlyPheGlnValLeuVal 1699934 : CTTCTGATATGTCTGGTTGGATTCCAAGTGCTCGTA : 1699971 vulgar: AfOr75P 220 288 . KQ414915.1 1699767 1699971 + 160 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699768 1699971 160 + . gene_id 13 ; sequence AfOr75P ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1699768 1699971 . + . KQ414915.1 exonerate:protein2genome:local exon 1699768 1699971 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699768 1699971 160 + . alignment_id 13 ; Query AfOr75P ; Align 1699768 221 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 0 -> 67 Target range: 1710200 -> 1710401 1 : MetArgArgProGlnAspLysAspIleSerIleIleTrpThrSerPheLeuMetLy : 19 |||!:! ! !:!! ! ! |||:!!.!!.!!! ! !||||||.!.!!!:!!|| MetLysLeuPheLysThrAspAspLeuGlyPheSerValThrSerMetPheValLy 1710201 : ATGAAATTGTTCAAGACTGACGACTTAGGTTTCAGCGTGACTTCGATGTTCGTGAA : 1710255 20 : sIleValGlyLeuTrpLeuAlaAlaAspArgAsnGluGlnArgCysArgAspPheA : 38 |!!::!!|||||||||:!!||| !:!!!:! !||||||!.! !|||:!! ! . sMetIleGlyLeuTrpMetAlaLysAsnGlnPheGluGlnHisValArgAsnValT 1710256 : AATGATCGGATTGTGGATGGCGAAAAATCAGTTCGAGCAACATGTCAGAAACGTGA : 1710312 39 : laLeuIleTyrThrValGlyThrLeuPheIleSerValCysIleAlaPheArgAsp : 56 !!|||.!!|||||| ::: ....!! !!! !:!:! ! !! !:!! hrLeuPheTyrThrPhePhePheValSerPheGlyPheTyrValGluAlaThrAsn 1710313 : CGTTGTTCTACacattcttcttcgtttccttcGGATTCTACGTGGAAGCTACGAAC : 1710366 57 : IleTyrHisSerTrpGlyAsnPheSerAspSer : 67 :!:|||||||||||||||:!!.!!|||! ||| LeuTyrHisSerTrpGlyAspLeuSerValSer 1710367 : CTGTACCACTCGTGGGGCGATCTCAGCGTGAGT : 1710401 vulgar: AfOr75P 0 67 . KQ414915.1 1710200 1710401 + 111 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1710201 1710401 111 + . gene_id 14 ; sequence AfOr75P ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1710201 1710401 . + . KQ414915.1 exonerate:protein2genome:local exon 1710201 1710401 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1710201 1710401 111 + . alignment_id 14 ; Query AfOr75P ; Align 1710201 1 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 0 -> 70 Target range: 1685751 -> 1685961 1 : MetArgArgProGlnAspLysAspIleSerIleIleTrpThrSerPheLeuMetLy : 19 |||!:! ! !!:!! !!!:!|||||||||:!!! ||||||:::|| MetGlnAlaThrLysTyrArgAspIleSerLeuLysCysGlyIlePheLeuLeuLy 1685752 : ATGCAGGCGACAAAATACAGGGATATTTCCCTCAAgtgtggaatttttcttttgaa : 1685806 20 : sIleValGlyLeuTrpLeuAlaAlaAspArgAsnGluGlnArgCysArgAspPheA : 38 |:::||||||||||||:!!:!! !:!!!!! !|||:!!||| ! ||| |||. sLeuValGlyLeuTrpMetSerMetAsnSerValGluGluArgArgArgArgPheT 1685807 : attagtCGGCCTCTGGATGTCCATGAACAGCGTCGAGGAGCGTCGAAGGAGGTTCA : 1685863 39 : laLeuIleTyrThrValGlyThrLeuPheIleSerValCysIleAlaPheArgAsp : 56 !!|||.!! :!!||| !.!!|||! ! !.!!|||! !:!: ! ! !.!||| hrLeuPheGlySerValPheAlaLeuSerTyrGlyValTyrValAsnValAsnAsp 1685864 : CGTTGTTCGGATCAGTTTTCGCCCTTTCTTACGGCGTTTACGTGAACGTAAACGAT : 1685917 57 : IleTyrHisSerTrpGlyAsnPheSerAspSerValPheIle : 70 ||| !||||||!::! !:!!.!.|||! |||:!! ||| IleLeuHisSerPheAspAspLeuSerValSerMetArgIle 1685918 : ATTCTTCACAGCTTCGATGATCTGAGCGTGAGTATGAGAATT : 1685961 vulgar: AfOr75P 0 70 . KQ414915.1 1685751 1685961 + 107 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1685752 1685961 107 + . gene_id 15 ; sequence AfOr75P ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1685752 1685961 . + . KQ414915.1 exonerate:protein2genome:local exon 1685752 1685961 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1685752 1685961 107 + . alignment_id 15 ; Query AfOr75P ; Align 1685752 1 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 642 Query range: 150 -> 405 Target range: 1707001 -> 1709261 151 : AsnIleGlyArgAsnGluThrAspArgIleLeuIlePheAsnMetTyrLeuAspLe : 169 !::||||||:::||||||:::||||||||||||||| !!|||.!.!:::!!|||!! SerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAspPh 1707002 : AgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGACTT : 1707056 170 : uProLeuSerIleSerProTyrTyrGluIleAlaTyrThrIleGln >>>> Tar : 185 !||| !!!!!!:!!!||||||||||||||| !!:!||| ||| eProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707057 : TCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt........ : 1707106 186 : get Intron 1 >>>> IleAlaAlaLeuAsnGlnAlaGlySerCysTyrPheC : 197 276 bp :!! ! !:!!! ! !.! !!! ! !!|||.!!| ++ValPheIleValMetTyrValCysIleSerTyrLeuC 1707107 : .................agGTTTTTATCGTAATGTACGTTTGCATAAGCTACCTTT : 1707416 198 : ysPheAspAsnIlePheCysIleLeuCysLeuAsnValAlaCysGlnPheArgIle : 215 ||.!!||||||.!!.!.|||!!::!! !|||:!!..!||| !|||||||||||| ysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIle 1707417 : GTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATA : 1707470 216 : LeuGlnTyrArgIleAlaAsnAlaProIleLeuLysLysLysGluAsnLeuAspSe : 234 ||||||||||||:!::!!|||!.! ! ! !!!.:!!:::...::: || LeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAspLysIleSe 1707471 : TTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttc : 1707527 235 : rSerLysTyrPro<-><->SerAspGluCysTyrAsnAlaPheLysAsnTyrIleG : 251 |...||| ||| ||||||||||||||| ! !|||||||||! !|||| rLysLysThrProSerAsnSerAspGluCysTyrAlaLysPheLysAsnCysIleG 1707528 : gaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTC : 1707584 252 : lnGlnHisGlnAlaLeuLeuHisPheCysGluThrLeuGluGlnIlePheThrIle : 269 |||||||||||||||||:!!.!.!:!|||.!. !|||:!!:!!:!:||| !:!! lnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluValPheGlyLeu 1707585 : AACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGGTGTTCGGTTTA : 1707638 270 : IleValValGlyGlnIleLeuMetPheSerIleLeuPheCysPheLeuGlyTyrGl : 288 .!!|||:!!!.!|||:!:|||:!:||||||:!:|||.!.|||.!! !|||||| PheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAspGlyTyr-- 1707639 : TTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGGATAT-- : 1707695 289 : nValIleLeu >>>> Target Intron 2 >>>> AlaAspLeuThrThrSe : 297 :!!:!::!! 457 bp ! !||| ! !!! !! -LeuValMet++ ++GluAspThrProIleMe 1707696 : -TTGGTGATGgt.........................agGAAGATACTCCCATTAT : 1708176 298 : rTyrArgValSerPheIleSerTyrLeuPheAlaGlyMetCysGlnLeuTrpMetP : 316 ! ! |||:!!!!!|||:!:! !:!!||| !.! !!:!!|||||||||! !|||| tGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuMetP 1708177 : GCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGATGT : 1708233 317 : heThrTyrSerCysAspCysIleThrGlnGluSerAlaGluIleAlaSerAlaAla : 334 ||||||||||||||||||||:!:! !!:!|||||| !.!.:!:|||!:!||| ! heThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIle 1708234 : TCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATA : 1708287 335 : TyrThrSerProTrpIleAspLeuProMetAspLysPheGlyLysMetLeuArgLy : 353 ||| !!!! !!|||||| !!||||||||||||!:!! !|||::!||||||||||| TyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLy 1708288 : TACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAA : 1708344 354 : sAspLeuGlnIleValValMetArgSerArgArgAlaCysCysLeuThrAlaCysG : 372 ||||||| !.!!|||:!! ||||||||| ! !!||||||||||||||||||| sAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysG 1708345 : AGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTG : 1708401 373 : lyPhePheProIleSerLeuGluThrTyrThrLys >>>> Target Intron : 384 |||||||||||:!:||||||||||||||||||..! 759 bp lyPhePheProValSerLeuGluThrTyrThrSer++ 1708402 : GATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt................... : 1708439 385 : 3 >>>> IleMetSerThrThrMetSerTyrPheThrLeuLeuLysGlnArgThr : 399 |||:!:||||||.!! !||||||||||||||||||::!:!!!:! ! ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgLysGlnGlu 1708440 : ......agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTACGAAAACAAGAA : 1709241 400 : ValAspAlaValAspThr : 405 !.!!!: !|||!!:||| AlaGluIleValGluThr 1709242 : GCAGAAATAGTTGAAACA : 1709261 vulgar: AfOr96 150 405 . KQ414915.1 1707001 1709261 + 642 M 34 102 5 0 2 I 0 272 3 0 2 M 54 162 G 0 6 M 49 147 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707002 1709261 642 + . gene_id 1 ; sequence AfOr96 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1707002 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707002 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 6 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709261 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709261 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1707002 1709261 642 + . alignment_id 1 ; Query AfOr96 ; Align 1707002 151 102 ; Align 1707380 185 162 ; Align 1707548 239 147 ; Align 1707695 289 9 ; Align 1708161 292 276 ; Align 1709196 384 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 469 Query range: 183 -> 400 Target range: 1702013 -> 1703659 184 : GlnIleAlaAlaLeuAsnGlnAlaGlySerCysTyrPheCysPheAspAsnIlePh : 202 |||:!! !:!!||| !!!!.!.!||| !||||||.!!||||||||||||:!!!! GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 203 : eCysIleLeuCysLeuAsnValAlaCysGlnPheArgIleLeuGlnTyrArgIleA : 221 .|||:!::!! !|||:!!!.!||| !||||||||||||||||||||||||:!!: uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 222 : laAsnAlaProIleLeuLysLysLys<-><->GluAsnLeuAspSerSerLysTyr : 237 !!||| ! ! ! !!!.!:!||| !!::!! !!!:|||||| ! ! erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1702179 238 : ProSerAspGluCysTyrAsnAlaPhe<-><-><->LysAsnTyrIleGlnGlnHi : 253 ! !||| ! ... ! |||..!!:! ||||||! !:!!!:!||||| LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHi 1702180 : CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACA : 1702236 254 : sGlnAlaLeuLeuHisPheCysGluThrLeuGluGlnIlePheThrIleIleValV : 272 |||| !! !:!! !:!|||.!.! !|||.!.:!!|||||||||:!!||||||: sGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValL 1702237 : TCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTAC : 1702293 273 : alGlyGlnIleLeuMetPheSerIleLeuPheCysPheLeuGlyTyrGlnValIle : 290 !!|||!!.||||||:!:||||||:!!|||.!.|||.!.:!!|||!:!||||||:!! euGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeu 1702294 : TCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTC : 1702347 291 : LeuAlaAspLeuThrThr{S} >>>> Target Intron 1 >>>> {er}Ty : 298 :!!!.! !!!!..! !{ } 607 bp {!!} ValValArgPheValGlu{P}-+ ++{ro}Ar 1702348 : GTGGTACGTTTCGTTGAA{C}ct.........................ag{CG}AG : 1702978 299 : rArgValSerPheIleSerTyrLeuPheAlaGlyMetCysGlnLeuTrpMetPheT : 317 |||:!!!!!|||:!!! !:!!:!! !!!.!.!!:!:|||||||||! !:!:|||| gArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLeuLeuPheT 1702979 : GCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATTGCTATTTA : 1703035 318 : hrTyrSerCysAspCysIleThrGlnGluSerAlaGluIleAlaSerAlaAlaTyr : 335 |||||||||||||| !!:!:! !:!!||||||.!!.!.|||!.!!!!||| !||| hrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaIleTyr 1703036 : CCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGATATAC : 1703089 336 : ThrSerProTrpIleAspLeuProMetAspLysPheGlyLysMetLeuArgLysAs : 354 !.!!||||||||| !!||||||||||||||| !|||!:!! !||||||!:!|| LeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArgArgAs 1703090 : CTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGAAGAGA : 1703146 355 : pLeuGlnIleValValMetArgSerArgArgAlaCysCysLeuThrAlaCysGlyP : 373 |||| !!!:|||:!!:!:|||||||||!:!:!! !!|||||||||||| !!|||| pLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSerGlyP 1703147 : CTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAGCGGAT : 1703203 374 : hePheProIleSerLeuGluThrTyrThrLys >>>> Target Intron 2 > : 384 ||||||||:!!||||||||||||! !|||! ! 373 bp hePheProValSerLeuGluThrCysThrThr++ 1703204 : TCTTTCCTGTTTCGCTGGAAACTTGTACCACGgt...................... : 1703238 385 : >>> IleMetSerThrThrMetSerTyrPheThrLeuLeuLysGlnArgThrVal : 400 :!::!:||||||.!!|||||||||||||||||||||!:!!!. ! !||| ++ValLeuSerThrAlaMetSerTyrPheThrLeuLeuArgHisSerPheVal 1703239 : ...agGTGCTCAGTACAGCGATGTCATACTTCACTTTATTAAGGCACTCTTTTGTA : 1703657 vulgar: AfOr96 183 400 . KQ414915.1 1702013 1703659 + 469 M 46 138 G 0 6 M 17 51 G 0 9 M 50 150 S 0 1 5 0 2 I 0 603 3 0 2 S 1 2 M 86 258 5 0 2 I 0 369 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1703659 469 + . gene_id 2 ; sequence AfOr96 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702014 1702368 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702368 . + . insertions 15 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1702369 1702370 . + . intron_id 1 ; splice_site "CT" KQ414915.1 exonerate:protein2genome:local intron 1702369 1702975 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702974 1702975 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1702976 1703235 . + . KQ414915.1 exonerate:protein2genome:local exon 1702976 1703235 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1703236 1703237 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1703236 1703608 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1703607 1703608 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1703609 1703659 . + . KQ414915.1 exonerate:protein2genome:local exon 1703609 1703659 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1703659 469 + . alignment_id 2 ; Query AfOr96 ; Align 1702014 184 138 ; Align 1702158 230 51 ; Align 1702218 247 150 ; Align 1702978 298 258 ; Align 1703609 384 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 451 Query range: 183 -> 401 Target range: 1688334 -> 1690091 184 : GlnIleAlaAlaLeuAsnGlnAlaGlySerCysTyrPheCysPheAspAsnIlePh : 202 ||| !..!:!! !!||| !|||:!!..!|||.!!|||! !|||!...!!|| GlnAlaLeuCysValTyrGlnIleGlyAlaAlaTyrIleCysSerAspThrPhePh 1688335 : CAGGCGCTGTGCGTGTATCAAATCGGCGCCGCCTATATCTGCTCCGACACGTTTTT : 1688389 203 : eCysIleLeuCysLeuAsnValAlaCysGlnPheArgIleLeuGlnTyrArgIleA : 221 ||||!!:||| !:!!:!!||| !||||||||||||||||||.!.||||||:!: eCysMetLeuAsnMetHisValIleCysGlnPheArgIleLeuAsnTyrArgLeuL 1688390 : CTGCATGCTGAACATGCACGTGATCTGCCAGTTCCGTATACTAAATTACAGACTGT : 1688446 222 : laAsnAla<->ProIleLeuLysLysLysGluAsnLeuAspSerSerLysTyrPro : 238 !||| ! |||:!!:!! ! :!!::! !|||:!! !!!:!!||| euAsnMetTrpProValIleAspGluArgThrAsnMet------ThrGluTyr--- 1688447 : TGAACATGTGGCCGGTCATCGACGAGCGAACGAACATG------ACCGAATAC--- : 1688494 239 : SerAspGluCysTyrAsnAlaPheLysAsnTyrIleGlnGlnHisGlnAlaLeuLe : 257 !!!:!!:!!||||||!.! !.!.! !:!!! !|||:!!.!.||||||:!!|||:! ThrAsnLysCysTyrThrLysLeuIleAspCysIleLysAsnHisGlnSerLeuIl 1688495 : ACGAACAAATGTTACACCAAGCTGATAGATTGCATCAAAAATCATCAGTCGTTGAT : 1688548 258 : uHisPheCysGluThrLeuGluGlnIlePheThrIleIleValValGlyGlnIleL : 276 !.!.||||||! !! !||||||.!.:!:!:!|||:!:! !:!!:!!|||!!.|||: eGluPheCysValLysLeuGluAsnValTyrThrLeuThrIleLeuGlyHisIleV 1688549 : CGAGTTCTGCGTGAAACTCGAGAACGTGTACACGTTGACTATACTCGGCCACATAG : 1688605 277 : euMetPheSerIleLeuPheCysPheLeuGlyTyrGlnValIleLeu >>>> Ta : 292 !!:!:||||||:!:|||.!.|||||| ! !|||:!!|||:!!||| alValPheSerLeuLeuMetCysPheAspThrTyrGluValValLeu++ 1688606 : TGGTCTTCAGCTTGTTGATGTGCTTCGACACGTACGAGGTAGTTCTGgt....... : 1688655 293 : rget Intron 1 >>>> AlaAspLeuThrThrSerTyrArgValSerPheIle : 303 816 bp ||| ! :!! !!|||!!! |||:!!! !|||:!! ++AlaLysValProThrThrThrArgLeuIlePheLeu 1688656 : ..................agGCAAAGGTACCTACCACGACGCGCCTCATATTCTTA : 1689502 304 : SerTyrLeuPheAlaGlyMetCysGlnLeuTrpMetPheThrTyrSerCysAspCy : 322 ! !:!!:!!.!!!.!.!!.!. !!..::: ...|||||||||||||||! ! ! PheHisMetIleGlySerPheIleHisIleIlePhePheThrTyrSerCysGlyGl 1689503 : TTCCACATGATCGGTAGCTTCATCCacataattttcttcacgtACAGTTGTGGTGG : 1689559 323 : sIleThrGlnGluSerAlaGluIleAlaSerAlaAlaTyrThrSerProTrpIleA : 341 !:!:! !:!!|||||| !!!:||||||!!!|||.!!|||.!!.!! !|||! ! yLeuIleGluGluSerMetAspIleAlaThrAlaThrTyrAlaGlyMetTrpThrV 1689560 : TTTGATAGAAGAGAGTATGGATATTGCAACAGCAACGTATGCAGGAATGTGGACGG : 1689616 342 : spLeuProMetAspLysPheGlyLysMetLeuArgLysAspLeuGlnIleValVal : 359 !|||||||||:!!||| !!|||||||||:!!||| !:!!:!!:!!:!!:!!..! alLeuProMetAsnLysValGlyLysMetIleArgGlyAsnMetLysLeuMetThr 1689617 : TTTTGCCAATGAATAAAGTTGGCAAAATGATACGAGGAAATATGAAGTTAATGACC : 1689670 360 : MetArgSerArgArgAlaCysCysLeuThrAlaCysGlyPhePheProIleSerLe : 378 :!:|||||| !!:! !!||||||:!!|||||| !!||||||||||||:!!||||| ValArgSerLeuGlnProCysCysIleThrAlaGlyGlyPhePheProValSerLe 1689671 : GTAAGGTCGTTGCAACCGTGTTGCATAACTGCTGGTGGATTCTTTCCTGTCTCCTT : 1689727 379 : uGluThrTyrThrLys >>>> Target Intron 2 >>>> IleMetSerTh : 387 |:!!||| !||| ! 293 bp :!!||||||:! uLysThrAlaThrAla++ ++LeuMetSerSe 1689728 : GAAAACTGCTACCGCGgt.........................agCTAATGAGTTC : 1690047 388 : rThrMetSerTyrPheThrLeuLeuLysGlnArgThrValAsp : 401 !|||||||||||||||||||||:!!!:!:!!|||:!!!.!!!: rThrMetSerTyrPheThrLeuMetArgGluArgSerAlaGlu 1690048 : CACAATGTCGTATTTCACGCTCATGAGAGAGAGATCGGCTGAA : 1690091 vulgar: AfOr96 183 401 . KQ414915.1 1688334 1690091 + 451 M 40 120 G 0 3 M 9 27 G 2 0 M 3 9 G 1 0 M 53 159 5 0 2 I 0 812 3 0 2 M 92 276 5 0 2 I 0 289 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688335 1690091 451 + . gene_id 3 ; sequence AfOr96 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688335 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688335 1688652 . + . insertions 3 ; deletions 3 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690091 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690091 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688335 1690091 451 + . alignment_id 3 ; Query AfOr96 ; Align 1688335 184 120 ; Align 1688458 224 27 ; Align 1688485 235 9 ; Align 1688494 239 159 ; Align 1689469 292 276 ; Align 1690038 384 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 382 Query range: 63 -> 230 Target range: 1693994 -> 1695004 64 : PheSerAlaCysThrTyrIleAlaCysAspGlyLeuGlyLeuValMetAspPhePh : 82 |||..!! !|||! !|||:!!!.!|||:!! !||| !|||!.!!!:! !||||| PheGlnAspCysIleTyrValGlyCysAsnIleLeuTyrLeuAlaIleValPhePh 1693995 : TTCCAGGACTGCATTTACGTCGGGTGCAACATTTTATACCTAGCGATCGTTTTCTT : 1694049 83 : eLysIlePheSerLeuPheIleHisGlnLysLysPheLeuGlyLeuMetAlaTyrM : 101 |||||||.!! !|||!:!! |||::!! !:!!|||! !||||||!!: !!:!! eLysIleLeuValLeuTyrLysHisArgIleGluPheTyrGlyLeuIleArgPheT 1694050 : CAAGATCCTCGTTTTGTACAAGCACAGAATAGAATTCTACGGGTTAATCAGGTTCA : 1694106 102 : etGlnLysAsnPheTrpHisTyrAspTyrAspGluGluGluAsnLeuIleValLys : 119 !|||:!!!!.|||||||||!:!||||||:!!..!..!|||!!.||||||:!!... hrGlnGluLysPheTrpHisPheAspTyrAsnSerArgGluLysLeuIleLeuSer 1694107 : CGCAAGAGAAATTCTGGCATTTCGACTATAATTCACGGGAGAAGTTAATTTTATCC : 1694160 120 : AspThrLysLysThrThrAlaTyrPheValCysIleLeuThrPheSerSerLeuSe : 138 !!: !||||||! ! !.!! !|||:!! ! !!!!!:!|||!!!!!!! !.! GluCysLysLysIleCysThrValPheIleValAlaPheSerPheCysThrGlnGl 1694161 : GAGTGCAAGAAGATATGTACCGTTTTCATCGTTGCCTTCAGCTTCTGTACTCAGGG : 1694217 139 : rSerIlePheMetTyrMetPheArgProLeuLeu{T} >>>> Target Intro : 150 !!!! ! ! |||:!: ! ! !|||:!!|||{.} 100 bp yThrCysAlaGlyTyrValValThrProIleLeu{A}++ 1694218 : CACGTGTGCTGGTTACGTAGTGACACCTATTTTA{g}gt................. : 1694256 151 : n 1 >>>> {hr}AsnIleGlyArgAsnGluThrAspArgIleLeuIlePheAsn : 164 {!!}|||:!!|||!:!|||:!!:!!!!:|||!!:||| !|||||| ++{la}AsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsn 1694257 : ........ag{CA}AATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAAC : 1694395 165 : MetTyrLeuAspLeuProLeuSerIleSerProTyrTyrGluIleAlaTyrThrIl : 183 |||!:::!!|||!!!||| !.!!:!:|||||||||||||||:!! !!:!! !|| MetTrpValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIl 1694396 : ATGTGGGTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCAT : 1694452 184 : eGln >>>> Target Intron 2 >>>> IleAlaAlaLeuAsnGlnAlaGl : 192 |||| 409 bp ! ! !..!:!! !!!!.!.!|| eGln++ ++ThrLeuCysValTyrHisValGl 1694453 : ACAGgt.........................agACACTTTGCGTGTACCATGTCGG : 1694888 193 : ySerCysTyrPheCysPheAspAsnIlePheCysIleLeuCysLeuAsnValAlaC : 211 |! !||||||.!.|||||||||||||||.!! !!:!!||| !|||:!!|||||| yIleCysTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaT 1694889 : TATATGTTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCA : 1694945 212 : ysGlnPheArgIleLeuGlnTyrArgIleAlaAsnAlaProIleLeuLysLysLys : 229 !||||||||||||||||||||||||.!! !||| ! !! !:!!! :!!||| hrGlnPheArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLys 1694946 : CTCAATTTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAG : 1694999 230 : Glu : 230 :!! Gln 1695000 : CAA : 1695004 vulgar: AfOr96 63 230 . KQ414915.1 1693994 1695004 + 382 M 86 258 S 0 1 5 0 2 I 0 96 3 0 2 S 1 2 M 34 102 5 0 2 I 0 405 3 0 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1693995 1695004 382 + . gene_id 4 ; sequence AfOr96 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1693995 1694253 . + . KQ414915.1 exonerate:protein2genome:local exon 1693995 1694253 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694254 1694255 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1694254 1694353 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694352 1694353 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694354 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694354 1694457 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695004 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695004 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1693995 1695004 382 + . alignment_id 4 ; Query AfOr96 ; Align 1693995 64 258 ; Align 1694356 151 102 ; Align 1694867 185 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 284 Query range: 147 -> 296 Target range: 1699025 -> 1699986 148 : LeuLeuThrAsnIleGlyArgAsnGluThrAspArgIleLeuIlePheAsnMetTy : 166 :!!|||...|||||||||||||||...:!!||||||:!:||| !|||||||||!: IleLeuAlaAsnIleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTr 1699026 : ATTTTAgcaaatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTG : 1699080 167 : rLeuAspLeuProLeuSerIleSerProTyrTyr{Gl} >>>> Target Intr : 178 ::!!|||||||||||||||:!:|||||| |||{||} 499 bp pValAspLeuProLeuSerValSerProThrTyr{Gl}-- 1699081 : GGTTGATTTGCCGCTGTCTGTGTCACCAACGTAC{GA}aa................ : 1699120 179 : on 1 >>>> {u}IleAlaTyrThrIleGlnIleAlaAlaLeuAsnGlnAlaGly : 192 {|} ! ! ! !|||:!! !:!!||| !!!!.!.!||| ++{u}AspPheValPheAlaGlnValLeuSerLeuTyrHisValGly 1699121 : .........ag{A}GATTTTGTGTTTGCACAGGTTCTGTCTTTGTACCACGTTGGT : 1699657 193 : SerCysTyrPheCysPheAspAsnIlePheCysIleLeuCysLeuAsnValAlaCy : 211 !||||||.!!||||||||||||:!!!!.|||:!::!! !|||:!!!.!||| ValCysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaTh 1699658 : GTATGTTACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTAC : 1699714 212 : sGlnPheArgIleLeuGlnTyrArgIleAlaAsnAlaProIleLeuLysLysLys< : 230 !||||||||||||||||||||||||:!!:!!||| ! ! ! !!!.!:!||| rGlnPheArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysG 1699715 : TCAATTTCGTATACTGCAATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGC : 1699771 231 : -><->GluAsnLeuAspSerSerLysTyrProSerAspGluCysTyrAsnAlaPhe : 246 !!::!! !!!:|||||| ! !! !||| ! ... ! |||..!!:! lnValAspAspAsnGluSerSerAlaAlaLeuSerArgPheAlaGluAsnCysTyr 1699772 : AAGTAGATGACAATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTAT : 1699825 247 : <-><-><->LysAsnTyrIleGlnGlnHisGlnAlaLeuLeuHisPheCysGluTh : 262 ||||||! !:!!!:!||||||||| !! !:!! !:!|||.!.! LysAlaPheLysAsnCysValArgGlnHisGlnAsnHisIleThrTyrCysHisAr 1699826 : AAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCATATCACGTACTGTCACAG : 1699882 263 : rLeuGluGlnIlePheThrIleIleValValGlyGlnIleLeuMetPheSerIleL : 281 !|||.!.:!!|||||||||:!!||||||:!!|||!!.||||||:!:||||||:!!| gLeuAsnGluIlePheThrValIleValLeuGlyHisIleLeuValPheSerLeuL 1699883 : ATTGAACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGCCTTC : 1699939 282 : euPheCysPheLeuGlyTyrGlnValIleLeuAlaAspLeuThrThr : 296 ||.!.|||.!.:!!|||!:!||||||:!!:!!! !:!!:!!! !||| euIleCysLeuValGlyPheGlnValLeuValGluAsnIleIleThr 1699940 : TGATATGTCTGGTTGGATTCCAAGTGCTCGTAGAAAACATCATCACC : 1699986 vulgar: AfOr96 147 296 . KQ414915.1 1699025 1699986 + 284 M 30 90 S 0 2 5 0 2 I 0 495 3 0 2 S 1 1 M 51 153 G 0 6 M 17 51 G 0 9 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699026 1699986 284 + . gene_id 5 ; sequence AfOr96 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1699026 1699117 . + . KQ414915.1 exonerate:protein2genome:local exon 1699026 1699117 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699118 1699119 . + . intron_id 1 ; splice_site "AA" KQ414915.1 exonerate:protein2genome:local intron 1699118 1699616 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699615 1699616 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699617 1699986 . + . KQ414915.1 exonerate:protein2genome:local exon 1699617 1699986 . + . insertions 15 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699026 1699986 284 + . alignment_id 5 ; Query AfOr96 ; Align 1699026 148 90 ; Align 1699618 179 153 ; Align 1699777 230 51 ; Align 1699837 247 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 272 Query range: 289 -> 392 Target range: 1695611 -> 1695920 290 : IleLeuAlaAspLeuThrThrSerTyrArgValSerPheIleSerTyrLeuPheAl : 308 :!!! !.!!|||! ! !! !!||| !.!|||.!!!!.:!! ! !!||| !. ValGlnThrAspSerProProSerArgAsnValGlyLeuValLeuAsnLeuAlaGl 1695612 : GTACAGACAGACTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGG : 1695666 309 : aGlyMetCysGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrGlnGluS : 327 ! !:!!|||||||||!::||||||||||||||||||||| !!:!:|||::!|||| yThrLeuCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGluS 1695667 : CACTTTGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGA : 1695723 328 : erAlaGluIleAlaSerAlaAlaTyrThrSerProTrpIleAspLeuProMetAsp : 345 || !!!::!!::!!!!|||!.!!:!.!!!!!|||||| !:!!|||||||||||| erMetAspValSerArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAsp 1695724 : GCATGGACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGAT : 1695777 346 : LysPheGlyLysMetLeuArgLysAspLeuGlnIleValValMetArgSerArgAr : 364 !:! !||||||! :!!|||:!!..!:!!! !!!:|||:!!|||||||||!.!|| ArgAsnGlyLysSerValArgGlnSerMetLeuMetValIleMetArgSerAsnAr 1695778 : AGAAATGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAG : 1695834 365 : gAlaCysCysLeuThrAlaCysGlyPhePheProIleSerLeuGluThrTyrThrL : 383 |..!||||||||||||||| !!||||||||||||:!!|||||||||||||||||| gCysCysCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrG 1695835 : GTGTTGCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTG : 1695891 384 : ysIleMetSerThrThrMetSerTyrPhe : 392 !:!!!!:!:! ! !! !||| !||| lyValIleAsn***AspThrSerIlePhe 1695892 : GGGTAATTAATTAAGATACGTCCATTTTT : 1695920 vulgar: AfOr96 289 392 . KQ414915.1 1695611 1695920 + 272 M 103 309 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1695612 1695920 272 + . gene_id 6 ; sequence AfOr96 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1695612 1695920 . + . KQ414915.1 exonerate:protein2genome:local exon 1695612 1695920 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1695612 1695920 272 + . alignment_id 6 ; Query AfOr96 ; Align 1695612 290 309 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 264 Query range: 298 -> 387 Target range: 1712390 -> 1712657 299 : ArgValSerPheIleSerTyrLeuPheAlaGlyMetCysGlnLeuTrpMetPheTh : 317 !:!::: ||| :::||| !.! !!|||||||||||| !|||||||| GlnMetIlePheThrPheHisLeuAlaGlyCysMetCysGlnLeuLeuMetPheTh 1712391 : CAGAtgattttcacgtttcacctAGCGGGATGTATGTGTCAATTGCTGATGTTTAC : 1712445 318 : rTyrSerCysAspCysIleThrGlnGluSerAlaGluIleAlaSerAlaAlaTyrT : 336 |||||||||||||||||||! ! !|||||| !.!.:!:.!!..!|||!.!||| rTyrSerCysAspCysIleIleThrGluSerLeuAsnValThrGluAlaValTyrA 1712446 : GTACAGCTGCGATTGTATAATAACGGAAAGTTTGAACGTGACGGAAGCGGTGTACG : 1712502 337 : hrSerProTrpIleAspLeuProMetAspLysPheGlyLysMetLeuArgLysAsp : 354 !.!!|||||| ! !|||||||||..!! ! |||!:!|||:!!||||||||| spGlyProTrpProArgLeuProMetSerThrArgGlyArgMetIleArgLysAsp 1712503 : ATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGAAGAATGATAAGGAAGGAT : 1712556 355 : LeuGlnIleValValMetArgSerArgArgAlaCysCysLeuThrAlaCysGlyPh : 373 ||| !:!!|||:!!!!:||||||||| ! !!||||||||||||||| ! ||||| LeuIleLeuValIleIleArgSerArgValProCysCysLeuThrAlaArgGlyPh 1712557 : TTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTGCTTGACCGCCAGAGGATT : 1712613 374 : ePheProIleSerLeuGluThrTyrThrLysIleMetSerThr : 387 |||| !||||||||||||||||||||||||:!!!!:..!:!! ePheValIleSerLeuGluThrTyrThrLysValIleAspSer 1712614 : CTTCGTAATATCTTTGGAAACGTATACGAAGGTAATTGACTCT : 1712657 vulgar: AfOr96 298 387 . KQ414915.1 1712390 1712657 + 264 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712391 1712657 264 + . gene_id 7 ; sequence AfOr96 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1712391 1712657 . + . KQ414915.1 exonerate:protein2genome:local exon 1712391 1712657 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712391 1712657 264 + . alignment_id 7 ; Query AfOr96 ; Align 1712391 299 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 220 Query range: 149 -> 230 Target range: 1711234 -> 1712023 150 : ThrAsnIleGlyArgAsnGluThrAspArgIleLeuIlePheAsnMetTyrLeuAs : 168 ..!||||||||||||||||||:!!|||||||||||| |||!!.|||!:::!!|| ValAsnIleGlyArgAsnGluSerAspArgIleLeuProPheLysMetTrpIleAs 1711235 : GTGAATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTGGATTGA : 1711289 169 : pLeuProLeuSerIleSerProTyrTyrGluIleAlaTyrThrIleGln >>>> : 185 |:!!||| !|||!!:!!!||||||:::|||||| :::|||:!!||| pIleProThrSerMetThrProTyrPheGluIlePhePheThrLeuGln++ 1711290 : TATACCGACATCGATGACACcgtattttgaaatattcttcaccTTACAGgt..... : 1711342 186 : Target Intron 1 >>>> IleAlaAlaLeuAsnGlnAlaGlySerCysTyrP : 196 546 bp :!! !:!! ! !!||| !||| ! !!||| ++ValLeuSerAlaTyrGlnIleGlyValSerTyrG 1711343 : ....................agGTTTTATCCGCGTATCAAATTGGCGTGAGTTACG : 1711919 197 : heCysPheAspAsnIlePheCysIleLeuCysLeuAsnValAlaCysGlnPheArg : 214 !||||||||||||:!!.!.||||||:!! !|||:!!:!!||| !||||||||| lyCysPheAspAsnValLeuCysIleMetAsnLeuHisLeuAlaThrGlnPheArg 1711920 : GTTGCTTCGACAACGTTCTATGCATCATGAACCTACACTTGGCCACTCAGTTTCGA : 1711973 215 : IleLeuGlnTyrArgIleAlaAsnAlaProIleLeuLysLysLysGlu : 230 |||||||||:!!|||:!:!.!||| ! ! !||||||!..|||:!! IleLeuGlnHisArgLeuValAsnIleAsnGlyLeuLysSerLysGln 1711974 : ATACTGCAACATAGACTGGTGAATATAAACGGTCTGAAGAGCAAACAG : 1712023 vulgar: AfOr96 149 230 . KQ414915.1 1711234 1712023 + 220 M 35 105 5 0 2 I 0 542 3 0 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711235 1712023 220 + . gene_id 8 ; sequence AfOr96 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1711235 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711235 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712023 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712023 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711235 1712023 220 + . alignment_id 8 ; Query AfOr96 ; Align 1711235 150 105 ; Align 1711886 185 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 199 Query range: 298 -> 404 Target range: 1682559 -> 1683075 299 : ArgValSerPheIleSerTyrLeuPheAlaGlyMetCysGlnLeuTrpMetPheTh : 317 |||:!!! !|||:!!!:!|||!!!.!!!.!|||:!! |||:::::::::...|| ArgLeuLeuPheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePheLeuIleTh 1682560 : CGATTGTTGTTCCTAAATTACTTTCTCGGTGGAGTGATacagatatttttaataac : 1682614 318 : rTyrSerCysAspCysIleThrGlnGluSerAlaGluIleAlaSerAlaAlaTyrT : 336 | !:!|||:!! !|||! !:!!:!!|||!.!! |||!.!!!!||| !|||! rLeuAsnCysAsnAspIleMetGluGlnSerGlyAlaIleGlyThrAlaIleTyrS 1682615 : ccTAAATTGCAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAGCGATCTACA : 1682671 337 : hrSerProTrpIleAspLeuProMetAspLysPheGlyLysMetLeuArgLysAsp : 354 :!!!! !||| ::: ||| ..!!!!||||||||| erCysAsnTrpGluArgAsnValTyrAsnHisPhe---TyrGlnPheArgLysAsp 1682672 : GTTGTAATTGGGAGAGGAAtgtttataatcatttt---taccAGTTCAGAAAGGAT : 1682722 355 : LeuGlnIleValValMetArgSerArgArgAlaCysCysLeuThrAlaCysGlyPh : 373 :!!..!||||||:!!:!:|||:!!!:!||| !!|||! !:!!:!!|||... !|| MetMetIleValMetValArgAlaLysArgProCysTyrIleSerAlaAlaLysPh 1682723 : ATGATGATTGTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGCAGCGAAATT : 1682779 374 : ePheProIleSerLeuGluThrTyrThrLys >>>> Target Intron 1 >> : 384 |||||||||||||||||||:!!!:!|||||| 201 bp ePheProIleSerLeuGluSerPheThrLys++ 1682780 : CTTTCCAATCTCCCTTGAATCGTTCACGAaggt....................... : 1682814 385 : >> IleMetSerThrThrMetSerTyrPheThrLeuLeuLysGlnArgThrValA : 401 :!::!:|||.!!||| ||||||!:!|||||||||::: !! ! !:!!| ++ValLeuSerAlaThrAlaSerTyrTyrThrLeuLeuArgThrMetGluMetA 1682815 : ..agGTGTTAAGTGCAACAGCATCTTATTATACACTGCTGCGTACAATGGAAATGG : 1683064 402 : spAlaValAsp : 404 ||!.!:!!!!: spValIleGlu 1683065 : ACGTCATAGAG : 1683075 vulgar: AfOr96 298 404 . KQ414915.1 1682559 1683075 + 199 M 49 147 G 1 0 M 35 105 5 0 2 I 0 197 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682560 1683075 199 + . gene_id 9 ; sequence AfOr96 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1682560 1682811 . + . KQ414915.1 exonerate:protein2genome:local exon 1682560 1682811 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1682812 1682813 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1682812 1683012 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1683011 1683012 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1683013 1683075 . + . KQ414915.1 exonerate:protein2genome:local exon 1683013 1683075 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1682560 1683075 199 + . alignment_id 9 ; Query AfOr96 ; Align 1682560 299 147 ; Align 1682707 349 105 ; Align 1683013 384 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 150 -> 319 Target range: 1681725 -> 1683451 151 : AsnIleGlyArgAsnGluThrAspArgIleLeuIlePheAsnMet<->TyrLeuAs : 168 |||||||||!:!!:!!!: !!!:||||||||| ||| .!. !!!:! AsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAs 1681726 : AACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAA : 1681780 169 : pLeuProLeuSerIleSerProTyrTyrGluIleAlaTyrThrIleGln >>>> : 185 !|||||| !|||:!:!!!||||||||||||||| :::..!|||:!! nLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681781 : CTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt..... : 1681833 186 : Target Intron 1 >>>> IleAlaAlaLeuAsnGlnAlaGlySerCysTyrP : 196 120 bp ! ! !:!!:!! !!.:!!|||! !|||!:!! ++ThrLeuSerValValHisSerGlyIleCysPheC 1681834 : ....................agACATTATCTGTGGTGCATTCGGGAATTTGTTTCT : 1681984 197 : heCysPheAspAsnIlePheCysIleLeuCysLeuAsnValAlaCysGlnPheArg : 214 !||||||||||||.!!.!.||||||||| !!:!!:!!|||!.! ! ||||||!:! ysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLys 1681985 : GTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAG : 1682038 215 : IleLeuGlnTyrArgIleAlaAsnAlaProIleLeuLysLysLysGluAsnLeuAs : 233 ||||||||| !!!:!:!! !!..!.! !! ! !|||......:::... .. IleLeuGlnAsnLysLeuGlnThrValLeuSerGluLysSerSerLysGluLysSe 1682039 : ATTTTACAAAACAAACTCCAAACAGTATTGAGTGAGAAatcttcgaaagaaaaatc : 1682095 234 : pSerSerLysTyrProSerAspGluCysTyrAsnAlaPheLysAsnTyrIleGlnG : 252 .:::.!! !||| !..! !:!! ! ! !!:! ! :!!! :!!! . rAlaGlyLeuTyrLysGluPheLysGluCysValGlnTyrHisHisLeuLeuLeuS 1682096 : agctGGACTGTATAAAGAGTTCAAGGAGTGCGTACAGTATCATCATTTGCTTCTTT : 1682152 253 : lnHisGlnAlaLeuLeuHisPheCysGluThrLeuGluGlnIlePheThrIleIle : 270 .!::: |||...::: !:!! ! !!!:.!! !:!::!: erTyrValGluLysLeuGluTyrValPheCysValProLeuMetIleGlnLeuLeu 1682153 : CGtacgtggaaaaattggaatacgTATTTTGTGTCCCGTTGATGATTCAATTGCTG : 1682206 271 : ValValGlyGlnIleLeuMetPheSerIleLeuPheCysPheLeu >>>> Targ : 286 ||| !.!! !:!!||| !!||| !!! ! ||| ValSerSerIleValLeuCysValSerGlyPheGlnLeuSerLeu++ 1682207 : GTGTCTAGCATAGTTCTGTGCGTCTCGGGGTTTCAACTATCATTGgt......... : 1682256 287 : et Intron 2 >>>> GlyTyrGlnValIleLeuAlaAspLeuThrThrSerTy : 298 1096 bp ||| ! :!!|||:!! !:!! ! ! !||||| --GlyIleGlyIleIleIleArgAsnThrLeuHisSerTy 1682257 : ................taGGAATCGGTATAATTATTCGAAACACTTTGCATTCGTA : 1683386 299 : rArgValSerPheIleSerTyrLeuPheAlaGlyMetCysGlnLeuTrpMetPheT : 317 ||||..!||||||.!!!:! ! !!! !:!! ! ! .!.|||!:::!!||| rArgThrSerPhePheAsnGlnPheAsnSerPheTrpLeuAsnLeuTyrValPheL 1683387 : CCGCACGTCCTTTTTCAATCAATTCAATTCTTTCTGGCTAAATCTATACGTGTTTT : 1683443 318 : hrTyrSer : 319 ! ||| euMetSer 1683444 : TAATGTCT : 1683451 vulgar: AfOr96 150 319 . KQ414915.1 1681725 1683451 + 160 M 15 45 G 0 3 M 19 57 5 0 2 I 0 116 3 0 2 M 101 303 5 0 2 I 0 1092 3 0 2 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681726 1683451 160 + . gene_id 10 ; sequence AfOr96 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681726 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681726 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682253 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682253 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1682254 1682255 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1682254 1683349 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1683348 1683349 . + . intron_id 1 ; splice_site "TA" KQ414915.1 exonerate:protein2genome:local cds 1683350 1683451 . + . KQ414915.1 exonerate:protein2genome:local exon 1683350 1683451 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681726 1683451 160 + . alignment_id 10 ; Query AfOr96 ; Align 1681726 151 45 ; Align 1681774 166 57 ; Align 1681951 185 303 ; Align 1683350 286 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 3 -> 64 Target range: 1697512 -> 1697695 4 : LysTyrArgLysAspLeuAlaPheThrValAlaSerPheTyrLeuArgValValGl : 22 ..!:!!! !||||||!!!|||.!. !:!!.!!||||||! :!!!:!:!!||||| SerHisThrLysAspPheAlaLeuLeuMetThrSerPheLeuMetLysIleValGl 1697513 : TCGCACACCAAAGATTTTGCTCTGTTAATGACGTCGTTTTTAATGAAGATCGTCGG : 1697567 23 : yPheTrpLeuThrThrSerArgLeuGluGluCysPheArgIleGlyValValGlyT : 41 |.!!||||||.!!! !..!!!! !|||||| !! ||| !..!:!! !| yLeuTrpLeuAlaLysAspSerLysGluGluArgLysArgArgTyrThrLeuIleT 1697568 : TCTTTGGTTAGCGAAAGACAGCAAGGAGGAACGCAAGCGTCGGTACACTTTGATCT : 1697624 42 : yrThrIleLeuAlaIleThrPheSerAlaTrpValGlnIleArgGlyLeuTyrPhe : 59 |||||:!::!!|||||| !|||.!!!.!|||||||||.!!|||! !!!!|||!:! yrThrValValAlaIleLeuPheGlyValTrpValGlnPheArgAspPheTyrTyr 1697625 : ATACGGTGGTCGCGATTTTGTTTGGAGTGTGGGTGCAGTTCAGAGACTTCTATTAC : 1697678 60 : AsnTrpGlyAspPhe : 64 ::!||| !:!!||| SerTrpProAsnPhe 1697679 : TCCTGGCCGAATTTT : 1697695 vulgar: AfOr96 3 64 . KQ414915.1 1697512 1697695 + 133 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1697513 1697695 133 + . gene_id 11 ; sequence AfOr96 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1697513 1697695 . + . KQ414915.1 exonerate:protein2genome:local exon 1697513 1697695 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1697513 1697695 133 + . alignment_id 11 ; Query AfOr96 ; Align 1697513 4 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 240 -> 294 Target range: 1695049 -> 1695211 241 : GluCysTyrAsnAlaPheLysAsnTyrIleGlnGlnHisGlnAlaLeuLeuHisPh : 259 !!: !!||| !!!.|||!:!! !:!:||| ! |||||||||||| ! !!: AspSerTyrLeuGlnLeuLysSerCysValGlnTyrHisGlnAlaLeuThrGlyTy 1695050 : GATAGTTACTTACAATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTA : 1695104 260 : eCysGluThrLeuGluGlnIlePheThrIleIleValValGlyGlnIleLeuMetP : 278 !|||:!!! !||||||.!.||||||:!!:!::!!|||:!!||||||:!:|||.!.. rCysLysLysLeuGluAsnIlePheSerLeuLeuValLeuGlyGlnValLeuPheL 1695105 : TTGCAAAAAGTTGGAGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCC : 1695161 279 : heSerIleLeuPheCysPheLeuGlyTyrGlnValIleLeuAlaAspLeu : 294 !.:!!!!::!!.!!|||.!!:!!|||||||||:!!.!!|||!.!..!||| euAlaMetValLeuCysLeuValGlyTyrGlnLeuPheLeuValSerLeu 1695162 : TAGCCATGGTACTTTGCCTCGTGGGATATCAGCTATTTCTGGTAAGTTTG : 1695211 vulgar: AfOr96 240 294 . KQ414915.1 1695049 1695211 + 132 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1695050 1695211 132 + . gene_id 12 ; sequence AfOr96 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1695050 1695211 . + . KQ414915.1 exonerate:protein2genome:local exon 1695050 1695211 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1695050 1695211 132 + . alignment_id 12 ; Query AfOr96 ; Align 1695050 241 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 0 -> 68 Target range: 1700446 -> 1700650 1 : MetAsnLeuLysTyrArgLysAspLeuAlaPheThrValAlaSerPheTyrLeuAr : 19 |||!.!! !||| ! !.!!:!|||:!!:!! ! !:!|||.!!:!!|||||||||!: MetThrSerLysLysAsnArgAspValSerValSerValThrAlaPheTyrLeuLy 1700447 : ATGACTTCGAAGAAGAACAGGGACGTATCAGTGAGCGTCACAGCTTTCTACTTGAA : 1700501 20 : gValValGlyPheTrpLeuThrThrSerArgLeuGluGluCysPheArgIleGlyV : 38 !:!!:!!||||||||||||.!! !!!! ! !|||:!! !! |||! !! sIleIleGlyPheTrpLeuAlaAspThrTyrGluGluLysArgArgArgLysPheA 1700502 : AATCATCGGCTTCTGGTTAGCTGACACTTACGAGGAGAAACGTCGAAGAAAGTTCG : 1700558 39 : alValGlyTyrThrIleLeuAlaIleThrPheSerAlaTrpValGlnIleArgGly : 56 .! !..!! !||||||||| !:!!! !! !:!!!.! !:!!:!!:!:|||! ! laGlnAsnCysThrIleLeuMetLeuMetCysAlaValLeuLeuGluValArgAsp 1700559 : CGCAGAATTGCACGATACTTATGCTTATGTGCGCTGTGCTGCTTGAGGTGAGGGAT : 1700612 57 : LeuTyrPheAsnTrpGlyAspPheSerAlaCysThr : 68 :!!||| !! !||||||||||||.!!!.! !!||| IleTyrHisIleTrpGlyAspPheGlyValSerThr 1700613 : ATCTATCACATCTGGGGAGATTTCGGCGTAAGTACA : 1700650 vulgar: AfOr96 0 68 . KQ414915.1 1700446 1700650 + 121 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1700447 1700650 121 + . gene_id 13 ; sequence AfOr96 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1700447 1700650 . + . KQ414915.1 exonerate:protein2genome:local exon 1700447 1700650 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1700447 1700650 121 + . alignment_id 13 ; Query AfOr96 ; Align 1700447 1 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 0 -> 68 Target range: 1704894 -> 1705098 1 : MetAsnLeuLysTyrArgLysAspLeuAlaPheThrValAlaSerPheTyrLeuAr : 19 |||!.!! !||| ! !.!!:!|||:!!:!! ! !:!|||.!!:!!|||||||||!: MetThrSerLysLysAsnArgAspValSerValSerValThrAlaPheTyrLeuLy 1704895 : ATGACTTCGAAGAAGAACAGGGACGTATCAGTGAGCGTCACAGCTTTCTACTTGAA : 1704949 20 : gValValGlyPheTrpLeuThrThrSerArgLeuGluGluCysPheArgIleGlyV : 38 !:!!:!!||||||||||||.!! !!!! ! !|||:!! !! |||! !! sIleIleGlyPheTrpLeuAlaAspThrTyrGluGluLysArgArgArgLysPheA 1704950 : AATCATCGGCTTCTGGTTAGCTGACACTTACGAGGAGAAACGTCGAAGAAAGTTCG : 1705006 39 : alValGlyTyrThrIleLeuAlaIleThrPheSerAlaTrpValGlnIleArgGly : 56 .! !..!! !||||||||| !:!!! !! !:!!!.! !:!!:!!:!:|||! ! laGlnAsnCysThrIleLeuMetLeuMetCysAlaValLeuLeuGluValArgAsp 1705007 : CGCAGAATTGCACGATACTTATGCTTATGTGCGCTGTGCTGCTTGAGGTGAGGGAT : 1705060 57 : LeuTyrPheAsnTrpGlyAspPheSerAlaCysThr : 68 :!!||| !! !||||||||||||.!!!.! !!||| IleTyrHisIleTrpGlyAspPheGlyValSerThr 1705061 : ATCTATCACATCTGGGGAGATTTCGGCGTAAGTACA : 1705098 vulgar: AfOr96 0 68 . KQ414915.1 1704894 1705098 + 121 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1704895 1705098 121 + . gene_id 14 ; sequence AfOr96 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1704895 1705098 . + . KQ414915.1 exonerate:protein2genome:local exon 1704895 1705098 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1704895 1705098 121 + . alignment_id 14 ; Query AfOr96 ; Align 1704895 1 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr83 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 594 Query range: 148 -> 400 Target range: 1694349 -> 1696248 149 : IleThrGlnSerGlySerAsnGluSerGluArgMetPheProPheAsnIleTrpIl : 167 :!!.!!.!. !|||!.!|||:!!||||||||||||!!.|||||||||!!:|||:! LeuAlaAsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTrpVa 1694350 : TTAGCAAATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTGGGT : 1694404 168 : eAsnLeuProLeuValThrArgThrProTyrTyrGluIleIlePhePheIleGln : 186 !:!!!!!||| ..! ! !:!!||||||||||||:!!:!!|||.!!|||||| lAspPhePro---ThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGln+ 1694405 : TGACTTTCCT---ACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGg : 1694458 187 : >>>> Target Intron 1 >>>> GlyValSerLeuTyrTyrIleGlyIleS : 195 409 bp !:!!!!!:!!|||:!!:!!||||||! + ++ThrLeuCysValTyrHisValGlyIleC 1694459 : t.........................agACACTTTGCGTGTACCATGTCGGTATAT : 1694894 196 : erTyrPheCysPheAspAsnIlePheCysIleMetAlaValHisLeuAlaGlyGln : 213 !!|||.!.|||||||||||||||.!! !!:!!:!! !:!!|||:!!||| !||| ysTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGln 1694895 : GTTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAA : 1694948 214 : PheArgIleLeuArgTyrArgLeuThrLysLeuCysAspThr<->GluAsnGluIl : 231 ||||||||||||!:!||||||!!!! !!!.||| !!:!!..! |||!!.:!!! PheArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLysGlnTh 1694949 : TTTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAAC : 1695005 232 : eArgLysLysAspSerGlnSerThrLeuAlaLysGlnMetTyrLysPheTyrGluG : 250 ! ! :::::: ::: ! !.!!!!. ! ! ! !||| !| rAspGlyArgGluLeuGluIleGlyTyrThrAsnPheThrValAspSerTyrLeuG 1695006 : AGACGGTcgagaattggaaattggtTACACAAATTTCACAGTCGATAGTTACTTAC : 1695062 251 : lnPheLysLysCysValArgTyrHisGlnAlaLeuIleAspTyrTyrGlnAsnLeu : 268 ||!!.|||!..||||||!:!|||||||||||||||! !! !|||! !:!!!!.||| lnLeuLysSerCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeu 1695063 : AATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTG : 1695116 269 : GluAsnValTyrThrMetIleThrLeuGlyGlnValLeuValPheGlyValLeuIl : 287 ||||||:!!!:!:!!:!!:!!..!||||||||||||||| !!.!.!.!:!!:!!:! GluAsnIlePheSerLeuLeuValLeuGlyGlnValLeuPheLeuAlaMetValLe 1695117 : GAGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTACT : 1695173 288 : eCysLeuPheGlyTyrGlnValPheVal >>>> Target Intron 2 >>>> : 297 !|||||| ! |||||||||:!!|||:!! 415 bp uCysLeuValGlyTyrGlnLeuPheLeu++ + 1695174 : TTGCCTCGTGGGATATCAGCTATTTCTGgt.........................a : 1695616 298 : AlaThrSerSerThrAlaArgArgPheIlePheValPheLeuLeuSerGlySerM : 315 .!! !||| !! !!:!!|||!.! !! !!!.|||.!! !|||:!!|||!!!: +ThrAspSerProProSerArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrL 1695617 : gACAGACTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTT : 1695672 316 : etPheLeuLeuPheMetPheThrTyrSerCysAsnGlyValIleGluGlnSerAsp : 333 !!! !! !||||||||||||||||||||||||:!!|||:!!! !..!:!!||| euCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGluSerMet 1695673 : TGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATG : 1695726 334 : AsnValAlaValGlyAlaTyrSerAlaLeuTrpThrIleLeuProMetAspLysPh : 352 :!!|||::! !!.!!.!!:!:!! !! !|||.!!! !||||||||||||!:! AspValSerArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAspArgAs 1695727 : GACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAA : 1695783 353 : eGlyArgMetLeuArgAsnAspLeuIleMetValMetLysArgSerArgArgValC : 371 !|||!:!! :!!|||.!...!:!!:!!||||||!!:! !||||||!.!||| !| nGlyLysSerValArgGlnSerMetLeuMetValIleMetArgSerAsnArgCysC 1695784 : TGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTT : 1695840 372 : ysCysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrLys > : 389 ||||||||||||||!:!||||||||||||||||||||||||||||||||| ! ysCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrGly++ 1695841 : GCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGgt. : 1695896 390 : >>> Target Intron 3 >>>> IleLeuSerThrAlaValSerTyrPheThr : 398 319 bp :!!||||||||||||:!!|||||||||||| ++ValLeuSerThrAlaMetSerTyrPheThr 1695897 : ........................agGTCCTCAGCACTGCAATGTCATACTTTACA : 1696240 399 : LeuLeu : 400 |||||| LeuLeu 1696241 : CTACTG : 1696248 vulgar: AfOr83 148 400 . KQ414915.1 1694349 1696248 + 594 M 22 66 G 1 0 M 14 42 5 0 2 I 0 405 3 0 2 M 42 126 G 0 3 M 69 207 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694350 1696248 594 + . gene_id 1 ; sequence AfOr83 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694350 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694350 1694457 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 2 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696248 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696248 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694350 1696248 594 + . alignment_id 1 ; Query AfOr83 ; Align 1694350 149 66 ; Align 1694416 172 42 ; Align 1694867 186 126 ; Align 1694996 228 207 ; Align 1695618 297 276 ; Align 1696213 389 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr83 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 580 Query range: 143 -> 408 Target range: 1711216 -> 1713339 144 : LeuThrThrProValIleThrGlnSerGlySerAsnGluSerGluArgMetPhePr : 162 ||| !|||! !||| !..!.!.! !|||!!!|||||||||!!:|||!!:.!.|| LeuAspThrArgValSerValAsnIleGlyArgAsnGluSerAspArgIleLeuPr 1711217 : CTCGATACTCGTGTTTCAGTGAATATTGGAAGAAACGAATCCGACAGAATACTGCC : 1711271 163 : oPheAsnIleTrpIleAsnLeuProLeuValThrArgThrProTyrTyrGluIleI : 181 ||||!!.!!:||||||:!!:!!||| ..!:!!! !|||||||||:::||||||. oPheLysMetTrpIleAspIlePro---ThrSerMetThrProTyrPheGluIleP 1711272 : GTTTAAAATGTGGATTGATATACCG---ACATCGATGACACcgtattttgaaatat : 1711325 182 : lePhePheIleGln >>>> Target Intron 1 >>>> GlyValSerLeuT : 190 ..||| :!!||| 546 bp ! !:!!||| !| hePheThrLeuGln++ ++ValLeuSerAlaT 1711326 : tcttcaccTTACAGgt.........................agGTTTTATCCGCGT : 1711898 191 : yrTyrIleGlyIleSerTyrPheCysPheAspAsnIlePheCysIleMetAlaVal : 208 || ! ||||||:!:|||||| !||||||||||||:!!.!.||||||||| !:!! yrGlnIleGlyValSerTyrGlyCysPheAspAsnValLeuCysIleMetAsnLeu 1711899 : ATCAAATTGGCGTGAGTTACGGTTGCTTCGACAACGTTCTATGCATCATGAACCTA : 1711952 209 : HisLeuAlaGlyGlnPheArgIleLeuArgTyrArgLeuThrLysLeuCysAspTh : 227 ||||||||| !|||||||||||||||!:!:!!||||||..!!!.:!! !! ! HisLeuAlaThrGlnPheArgIleLeuGlnHisArgLeuValAsnIleAsnGlyLe 1711953 : CACTTGGCCACTCAGTTTCGAATACTGCAACATAGACTGGTGAATATAAACGGTCT : 1712009 228 : rGluAsnGluIleArgLysLysAspSerGlnSerThrLeuAlaLysGlnMetTyr< : 246 !:!!!:!:!! ! ! !:!! ! .!!:!!!!!:!!:!! ! ! ..!! ! uLysSerLysGlnThrProGluLysGlyGluThrSerIleIleAspSerThrGluP 1712010 : GAAGAGCAAACAGACACCGGAGAAAGGTGAAACGTCGATTATAGATTCGACAGAAT : 1712066 247 : -><-><->LysPheTyrGluGlnPheLysLysCysValArgTyrHisGlnAlaLeu : 261 !!.! !|||!!: ||||||!:!||||||||| ! ||||||:!!||| heAlaAspAsnSerTyrAspValPheLysArgCysValArgGlnHisGlnSerLeu 1712067 : TTGCGGATAACTCTTACGACGTTTTCAAAAGATGCGTTCGTCAACATCAATCTCTG : 1712120 262 : IleAspTyrTyrGlnAsnLeuGluAsnValTyrThrMetIleThrLeuGlyGlnVa : 280 !!:! !!:!! :::...||||||...:::!:!!:!||||||! !|||||||||:! MetAlaPheCysGluLysLeuGluGluMetPheSerMetIleIleLeuGlyGlnLe 1712121 : ATGGCTTTCTgcgagaaactcgaagaaatgTTCAGTATGATTATACTGGGGCAATT : 1712177 281 : lLeuValPheGlyValLeuIleCysLeuPheGlyTyrGlnValPheVal >>>> : 297 !|||||||||.!!:!!!!!!!:|||||| !! !! !||||||.!!:!! uLeuValPheSerIlePheMetCysLeuAspValCysGlnValLeuLeu++ 1712178 : GTTAGTGTTCAGTATTTTTATGTGTCTCGACGTGTGCCAAGTACTTCTGgt..... : 1712230 298 : Target Intron 2 >>>> AlaThrSerSerThrAlaArgArgPheIlePheV : 308 142 bp !! !:!!|||..!!.!!:!!:!...||||||. ++ProGlyAlaSerValGlyLysGlnMetIlePheT 1712231 : ....................agCCAGGTGCATCTGTGGGTAAACAGAtgattttca : 1712403 309 : alPheLeuLeuSerGlySerMetPheLeuLeuPheMetPheThrTyrSerCysAsn : 326 ..||| |||:!!|||!!!|||! !! !|||.!.||||||||||||||||||:!! hrPheHisLeuAlaGlyCysMetCysGlnLeuLeuMetPheThrTyrSerCysAsp 1712404 : cgtttcacctAGCGGGATGTATGTGTCAATTGCTGATGTTTACGTACAGCTGCGAT : 1712457 327 : GlyValIleGluGlnSerAspAsnValAlaValGlyAlaTyrSerAlaLeuTrpTh : 345 !!:!!||| !:!!||| ||||||.!!! !!.!!.!|||..!!.!! !||| ! CysIleIleThrGluSerLeuAsnValThrGluAlaValTyrAspGlyProTrpPr 1712458 : TGTATAATAACGGAAAGTTTGAACGTGACGGAAGCGGTGTACGATGGACCATGGCC : 1712514 346 : rIleLeuProMetAspLysPheGlyArgMetLeuArgAsnAspLeuIleMetValM : 364 ! !|||||||||..!! ! |||||||||:!!|||!!.|||||||||:!:|||! oArgLeuProMetSerThrArgGlyArgMetIleArgLysAspLeuIleLeuValI 1712515 : ACGTTTGCCAATGAGCACGAGAGGAAGAATGATAAGGAAGGATTTGATACTCGTTA : 1712571 365 : etLysArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePheProValSer : 382 !:! !||||||||| ! !|||||||||||||||!..||||||||| !:!!||| leIleArgSerArgValProCysCysLeuThrAlaArgGlyPhePheValIleSer 1712572 : TCATAAGATCGAGAGTACCTTGTTGCTTGACCGCCAGAGGATTCTTCGTAATATCT : 1712625 383 : LeuGluThrTyrThrLys >>>> Target Intron 3 >>>> IleLeuSer : 391 |||||||||||||||||| 634 bp :!!:!!||| LeuGluThrTyrThrLys++ ++ValIleSer 1712626 : TTGGAAACGTATACGAAGgt.........................agGTTATAAGT : 1713286 392 : ThrAlaValSerTyrPheThrLeuLeuAsnAsnArgValGluAsnAlaSer : 408 |||||||||||||||||||||||||||!...!.|||:!!|||.!.::!!:! ThrAlaValSerTyrPheThrLeuLeuArgGlnArgIleGluGluSerAsn 1713287 : ACAGCAGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAGGAAAGCAAT : 1713339 vulgar: AfOr83 143 408 . KQ414915.1 1711216 1713339 + 580 M 27 81 G 1 0 M 14 42 5 0 2 I 0 542 3 0 2 M 60 180 G 0 9 M 51 153 5 0 2 I 0 138 3 0 2 M 92 276 5 0 2 I 0 630 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711217 1713339 580 + . gene_id 2 ; sequence AfOr83 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1711217 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711217 1711339 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712227 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712228 1712229 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712228 1712369 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1712368 1712369 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1712370 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712370 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713339 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711217 1713339 580 + . alignment_id 2 ; Query AfOr83 ; Align 1711217 144 81 ; Align 1711298 172 42 ; Align 1711886 186 180 ; Align 1712075 246 153 ; Align 1712370 297 276 ; Align 1713280 389 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr83 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 538 Query range: 152 -> 403 Target range: 1707007 -> 1709240 153 : GlySerAsnGluSerGluArgMetPheProPheAsnIleTrpIleAsnLeuProLe : 171 |||...|||||||||:!:|||!!:.!! ! !!|||.!!||||||:!!!!!||| GlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAspPhePro-- 1707008 : ggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGACTTTCCG-- : 1707062 172 : uValThrArgThrProTyrTyrGluIleIlePhePheIleGln >>>> Target : 186 ..!|||! !||||||||||||||||||:!!||| ||| 2 -ThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707063 : -ACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt........... : 1707106 187 : Intron 1 >>>> GlyValSerLeuTyrTyrIleGlyIleSerTyrPheCysP : 199 76 bp ! ! !!! !:!! |||:!! !!|||||||||.!!|||. ++ValPheIleValMetTyrValCysIleSerTyrLeuCysI 1707107 : ..............agGTTTTTATCGTAATGTACGTTTGCATAAGCTACCTTTGTA : 1707419 200 : heAspAsnIlePheCysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeu : 217 !!||||||.!!.!.|||!!:!!: !:!!||| !||| !||||||||||||||| leAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeu 1707420 : TCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTG : 1707473 218 : ArgTyrArgLeuThrLysLeuCysAspThrGluAsnGluIleArgLysLysAspSe : 236 !:!|||||||||:!!!!.:!!|||! !.!! |||||| !! ||| || GlnTyrArgLeuSerAsnValCysGlyAla---AsnGluArgSerAspLysIleSe 1707474 : CAATACAGACTGTCGAATGTGTGCGGTGCA---AACGAACGTAgcgataaaatttc : 1707527 237 : rGlnSerThrLeuAlaLysGlnMetTyrLysPheTyrGluGlnPheLysLysCysV : 255 |:::...||| !!....!. ! !!:!!! !|||! :!!||||||!!.|||: rLysLysThr---ProSerAsnSerAspGluCysTyrAlaLysPheLysAsnCysI 1707528 : gaaaaaaaca---CCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCA : 1707581 256 : alArgTyrHisGlnAlaLeuIleAspTyrTyrGlnAsnLeuGluAsnValTyrThr : 273 !!!:! ! |||||||||||||||!!:|||! !.!..!.|||:!!.!.|||!:! ! leGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluValPheGly 1707582 : TTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGGTGTTCGGT : 1707635 274 : MetIleThrLeuGlyGlnValLeuValPheGlyValLeuIleCysLeuPheGlyTy : 292 :!:.!!..!|||!.!|||||||||:!!|||.!!:!!|||!!:|||||| !||||| LeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAspGlyTy 1707636 : TTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGGATA : 1707692 293 : rGlnValPhe >>>> Target Intron 2 >>>> ValAlaThrSerSerTh : 301 | !|||.!. 457 bp ! !! !||| !!! rLeuValMet++ ++GluAspThr---ProIl 1707693 : TTTGGTGATGgt.........................agGAAGATACT---CCCAT : 1708173 302 : rAlaArgArgPheIlePheValPheLeuLeuSerGlySerMetPheLeuLeuPheM : 320 ! !!:!|||.!!! !|||:!!|||! !|||!!!|||!!!:!!! !! !|||!!.| eMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuM 1708174 : TATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGA : 1708230 321 : etPheThrTyrSerCysAsnGlyValIleGluGlnSerAspAsnValAlaValGly : 338 |||||||||||||||||:!! !!:!!|||..!:!!||| ||||||||| !!.! etPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAla 1708231 : TGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCT : 1708284 339 : AlaTyrSerAlaLeuTrpThrIleLeuProMetAspLysPheGlyArgMetLeuAr : 357 !|||..!..!! !|||! ! !||||||||||||!:!! !|||||||||||||| IleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuAr 1708285 : ATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCG : 1708341 358 : gAsnAspLeuIleMetValMetLysArgSerArgArgValCysCysLeuThrAlaA : 376 |!!.||||||! !.!.|||!!: !||||||||| ! !||||||||||||||| gLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaC 1708342 : AAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTT : 1708398 377 : snGlyPhePheProValSerLeuGluThrTyrThrLys >>>> Target Intr : 389 !|||||||||||||||||||||||||||||||||..! 759 bp ysGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708399 : GTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt................ : 1708439 390 : on 3 >>>> IleLeuSerThrAlaValSerTyrPheThrLeuLeuAsnAsnArg : 403 |||||||||||||||!.!||||||||||||||||||...!!.!:! ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgLysGln 1708440 : .........agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTACGAAAACAA : 1709238 vulgar: AfOr83 152 403 . KQ414915.1 1707007 1709240 + 538 M 18 54 G 1 0 M 14 42 5 0 2 I 0 272 3 0 2 M 42 126 G 1 0 M 11 33 G 1 0 M 55 165 5 0 2 I 0 453 3 0 2 M 3 9 G 1 0 M 89 267 5 0 2 I 0 755 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707008 1709240 538 + . gene_id 3 ; sequence AfOr83 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1707008 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707008 1707103 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709240 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709240 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1707008 1709240 538 + . alignment_id 3 ; Query AfOr83 ; Align 1707008 153 54 ; Align 1707062 172 42 ; Align 1707380 186 126 ; Align 1707506 229 33 ; Align 1707539 241 165 ; Align 1708161 296 9 ; Align 1708170 300 267 ; Align 1709196 389 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr83 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 379 Query range: 234 -> 403 Target range: 1688466 -> 1690082 235 : AspSerGlnSerThrLeuAlaLysGlnMetTyrLysPheTyrGluGlnPheLysLy : 253 |||..!!:!!!!!.!:!!.!!:!! ! ! ! !!|||! !||| :!!.!.! ! ! AspGluArgThrAsnMetThrGluTyrThrAsnLysCysTyrThrLysLeuIleAs 1688467 : GACGAGCGAACGAACATGACCGAATACACGAACAAATGTTACACCAAGCTGATAGA : 1688521 254 : sCysValArgTyrHisGlnAlaLeuIleAspTyrTyrGlnAsnLeuGluAsnValT : 272 |||:!!!:! !!||||||:!!||||||!!:!:!! ! !!!.||||||||||||| pCysIleLysAsnHisGlnSerLeuIleGluPheCysValLysLeuGluAsnValT 1688522 : TTGCATCAAAAATCATCAGTCGTTGATCGAGTTCTGCGTGAAACTCGAGAACGTGT : 1688578 273 : yrThrMetIleThrLeuGlyGlnValLeuValPheGlyValLeuIleCysLeuPhe : 290 |||||:!!! !! !||||||!!.:!!:!!||||||.!!:!!|||!!:|||!!! ! yrThrLeuThrIleLeuGlyHisIleValValPheSerLeuLeuMetCysPheAsp 1688579 : ACACGTTGACTATACTCGGCCACATAGTGGTCTTCAGCTTGTTGATGTGCTTCGAC : 1688632 291 : GlyTyrGlnValPheVal >>>> Target Intron 1 >>>> AlaThrSer : 299 !|||:!!||| !!:!! 816 bp |||! ! ! ThrTyrGluValValLeu++ ++AlaLysVal 1688633 : ACGTACGAGGTAGTTCTGgt.........................agGCAAAGGTA : 1689475 300 : SerThrAlaArgArgPheIlePheValPheLeuLeuSerGlySerMetPheLeuLe : 318 !!|||.!!! !|||.!!||||||:!!|||! !:!!! !||||||.!..!!! :: ProThrThrThrArgLeuIlePheLeuPheHisMetIleGlySerPheIleHisIl 1689476 : CCTACCACGACGCGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCacat : 1689532 319 : uPheMetPheThrTyrSerCysAsnGlyValIleGluGlnSerAspAsnValAlaV : 337 :......|||||||||||||||..!|||:!!||||||:!!||| :!!:!!|||. eIlePhePheThrTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleAlaT 1689533 : aattttcttcacgtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCAA : 1689589 338 : alGlyAlaTyrSerAlaLeuTrpThrIleLeuProMetAspLysPheGlyArgMet : 355 .!!.!.!!|||:!!!.!:!!||||||:!!|||||||||:!!||| !!|||!:!||| hrAlaThrTyrAlaGlyMetTrpThrValLeuProMetAsnLysValGlyLysMet 1689590 : CAGCAACGTATGCAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAATG : 1689643 356 : LeuArgAsnAspLeuIleMetValMetLysArgSerArgArgValCysCysLeuTh : 374 :!!|||...:!!:!!! :!::!!! !|||||| !!:! !||||||:!!|| IleArgGlyAsnMetLysLeuMetThrValArgSerLeuGlnProCysCysIleTh 1689644 : ATACGAGGAAATATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAAC : 1689700 375 : rAlaAsnGlyPhePheProValSerLeuGluThrTyrThrLys >>>> Target : 389 ||||..!|||||||||||||||||||||:!!||| !||| ! 2 rAlaGlyGlyPhePheProValSerLeuLysThrAlaThrAla++ 1689701 : TGCTGGTGGATTCTTTCCTGTCTCCTTGAAAACTGCTACCGCGgt........... : 1689747 390 : Intron 2 >>>> IleLeuSerThrAlaValSerTyrPheThrLeuLeuAsnA : 402 93 bp :!!:!!|||:!!.!!:!!|||||||||||||||:!!!... ++LeuMetSerSerThrMetSerTyrPheThrLeuMetArgG 1689748 : ..............agCTAATGAGTTCCACAATGTCGTATTTCACGCTCATGAGAG : 1690077 403 : snArg : 403 !.||| luArg 1690078 : AGAGA : 1690082 vulgar: AfOr83 234 403 . KQ414915.1 1688466 1690082 + 379 M 62 186 5 0 2 I 0 812 3 0 2 M 92 276 5 0 2 I 0 289 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688467 1690082 379 + . gene_id 4 ; sequence AfOr83 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688467 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688467 1688652 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690082 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690082 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688467 1690082 379 + . alignment_id 4 ; Query AfOr83 ; Align 1688467 235 186 ; Align 1689469 297 276 ; Align 1690038 389 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr83 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 315 Query range: 147 -> 296 Target range: 1699025 -> 1699971 148 : ValIleThrGlnSerGlySerAsnGluSerGluArgMetPheProPheAsnIleTr : 166 :!!:!!...... ||| |||...|||!!:|||:!!.!!|||||||||!!:|| IleLeuAlaAsnIleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTr 1699026 : ATTTTAgcaaatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTG : 1699080 167 : pIleAsnLeuProLeuValThrArgThrProTyrTyrGlu{Il} >>>> Targe : 180 |:!!:!!||||||||| !..! ! !! !!||| ! !{:!} pValAspLeuProLeuSerValSerProThrTyrGluIle{Va}++ 1699081 : GGTTGATTTGCCGCTGTCTGTGTCACCAACGTACGAAATA{GT}gt.......... : 1699126 181 : t Intron 1 >>>> {e}IlePhe<->PheIleGlnGlyValSerLeuTyrTyr : 191 493 bp {!} !||| ||| !|||! !:!!|||||||||:!! ++{l}AspPheValPheAlaGlnValLeuSerLeuTyrHis 1699127 : ...............ag{A}GATTTTGTGTTTGCACAGGTTCTGTCTTTGTACCAC : 1699651 192 : IleGlyIleSerTyrPheCysPheAspAsnIlePheCysIleMetAlaValHisLe : 210 :!!|||:!!!!!|||.!!||||||||||||:!!!!.|||:!:||| !:!!||| ValGlyValCysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAl 1699652 : GTTGGTGTATGTTACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGC : 1699708 211 : uAlaGlyGlnPheArgIleLeuArgTyrArgLeuThrLysLeuCysAspThr<->G : 228 !||| !|||||||||||||||!:!|||||||||:!!!!.||| !!|||||| . aAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsnA 1699709 : GGCTACTCAATTTCGTATACTGCAATACAGGTTATCGAACTTGGGTGATACGAACA : 1699765 229 : luAsnGluIleArgLysLysAspSerGlnSerThrLeuAlaLysGlnMetTyrLys : 246 .!!!.:!!:!! ! ! !!.!!:|||...:!!.!!|||:!!::: ! ! !!. rgLysGlnValAspAspAsnGluSerSerAlaAlaLeuSerArgPheAlaGluAsn 1699766 : GGAAGCAAGTAGATGACAATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAAC : 1699819 247 : PheTyrGluGlnPheLysLysCysValArgTyrHisGlnAlaLeuIleAspTyrTy : 265 ! !|||:!! !||||||!!.||||||||| ! |||||| !! !||| |||! CysTyrLysAlaPheLysAsnCysValArgGlnHisGlnAsnHisIleThrTyrCy 1699820 : TGTTATAAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCATATCACGTACTG : 1699876 266 : rGlnAsnLeuGluAsnValTyrThrMetIleThrLeuGlyGlnValLeuValPheG : 284 !!!.!..|||.!..!.:!!!:!|||:!:|||..!||||||!!.:!!|||||||||. sHisArgLeuAsnGluIlePheThrValIleValLeuGlyHisIleLeuValPheS 1699877 : TCACAGATTGAACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCA : 1699933 285 : lyValLeuIleCysLeuPheGlyTyrGlnValPheVal : 296 !!:!!|||||||||||| !!|||!:!||||||.!!||| erLeuLeuIleCysLeuValGlyPheGlnValLeuVal 1699934 : GCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTCGTA : 1699971 vulgar: AfOr83 147 296 . KQ414915.1 1699025 1699971 + 315 M 32 96 S 0 2 5 0 2 I 0 489 3 0 2 S 1 1 M 2 6 G 0 3 M 45 135 G 0 3 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699026 1699971 315 + . gene_id 5 ; sequence AfOr83 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1699026 1699123 . + . KQ414915.1 exonerate:protein2genome:local exon 1699026 1699123 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699124 1699125 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699124 1699616 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699615 1699616 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699617 1699971 . + . KQ414915.1 exonerate:protein2genome:local exon 1699617 1699971 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699026 1699971 315 + . alignment_id 5 ; Query AfOr83 ; Align 1699026 148 96 ; Align 1699618 181 6 ; Align 1699627 183 135 ; Align 1699765 228 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr83 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 281 Query range: 182 -> 296 Target range: 1702007 -> 1702352 183 : PheIleGlnGlyValSerLeuTyrTyrIleGlyIleSerTyrPheCysPheAspAs : 201 ||| !|||! !:!!|||||||||:!!:!!|||:!!!!!|||.!!||||||||||| PheAlaGlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAs 1702008 : TTTGCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAA : 1702062 202 : nIlePheCysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeuArgTyrA : 220 |:!!!!.|||:!:||| !:!!||| !||| !|||||||||||||||!:!|||| nLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrA 1702063 : CCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACA : 1702119 221 : rgLeuThrLysLeuCysAspThr<->GluAsnGluIleArgLysLysAspSerGln : 237 |||||:!!!!.||| !!|||||| ..!!!.:!!:!! ! ! !!.!!:|||... rgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSer 1702120 : GGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGC : 1702173 238 : SerThrLeuAlaLysGlnMetTyrLysPheTyrGluGlnPheLysLysCysValAr : 256 :!!.!!|||:!!::: ! ! !!.! !|||:!! !||||||!!.|||||||| AlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValAr 1702174 : GCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACG : 1702230 257 : gTyrHisGlnAlaLeuIleAspTyrTyrGlnAsnLeuGluAsnValTyrThrMetI : 275 | ! |||||| !! !||| |||! !!!.!..|||.!..!.:!!!:!|||:!:| gGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValI 1702231 : ACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCA : 1702287 276 : leThrLeuGlyGlnValLeuValPheGlyValLeuIleCysLeuPheGlyTyrGln : 293 ||..!||||||!!.:!!|||||||||.!!:!!|||||||||||| !!|||!:!||| leValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGln 1702288 : TTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAA : 1702341 294 : ValPheVal : 296 |||.!!||| ValLeuVal 1702342 : GTGCTCGTG : 1702352 vulgar: AfOr83 182 296 . KQ414915.1 1702007 1702352 + 281 M 45 135 G 0 3 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702008 1702352 281 + . gene_id 6 ; sequence AfOr83 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702008 1702352 . + . KQ414915.1 exonerate:protein2genome:local exon 1702008 1702352 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702008 1702352 281 + . alignment_id 6 ; Query AfOr83 ; Align 1702008 183 135 ; Align 1702146 228 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr83 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 262 Query range: 299 -> 395 Target range: 1702968 -> 1703256 300 : SerThrAlaArgArgPheIlePheValPheLeuLeuSerGlySerMetPheLeuLe : 318 !!! !!|||||||||.!!! !|||||||||! !:!! !||||||:!:! !! !|| ThrProAlaArgArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLe 1702969 : ACTCCAGCGAGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACT : 1703023 319 : uPheMetPheThrTyrSerCysAsnGlyValIleGluGlnSerAspAsnValAlaV : 337 |!!.:!:|||||||||||||||:!!|||:!!||||||:!!||| |||:!!!.!. uLeuLeuPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyT 1703024 : ATTGCTATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGA : 1703080 338 : alGlyAlaTyrSerAlaLeuTrpThrIleLeuProMetAspLysPheGlyArgMet : 355 .!!.! !||| !!.!! !|||! ! !||||||||||||||| !||||||! ! hrAlaIleTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArg 1703081 : CTGCGATATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGG : 1703134 356 : LeuArgAsnAspLeuIleMetValMetLysArgSerArgArgValCysCysLeuTh : 374 ||||||!..||||||! !||||||!!: !|||||||||!:! ! !!|||||||| LeuArgArgAspLeuThrMetValIleValArgSerArgLysSerSerCysLeuTh 1703135 : TTGAGAAGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAAC : 1703191 375 : rAlaAsnGlyPhePheProValSerLeuGluThrTyrThrLysIleLeuSerThrA : 393 ||||!:!|||||||||||||||||||||||||||! !|||! !:!!!!!!:! !: rAlaSerGlyPhePheProValSerLeuGluThrCysThrThrValPheAsnPheS 1703192 : TGCCAGCGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATTTCT : 1703248 394 : laValSer : 395 !! !!||| erPheSer 1703249 : CATTCTCT : 1703256 vulgar: AfOr83 299 395 . KQ414915.1 1702968 1703256 + 262 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702969 1703256 262 + . gene_id 7 ; sequence AfOr83 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702969 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1702969 1703256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702969 1703256 262 + . alignment_id 7 ; Query AfOr83 ; Align 1702969 300 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr83 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 302 -> 400 Target range: 1682556 -> 1683048 303 : ArgArgPheIlePheValPheLeuLeuSerGlySerMetPheLeuLeuPheMetPh : 321 !:!|||!!.:!:|||:!! !! !!!! !|||.!!:!!.!. :::|||:::.. LysArgLeuLeuPheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePheLeuIl 1682557 : AAACGATTGTTGTTCCTAAATTACTTTCTCGGTGGAGTGATacagatatttttaat : 1682611 322 : eThrTyrSerCysAsnGlyValIleGluGlnSerAspAsnValAlaValGlyAlaT : 340 .||| !:!||||||! !:!!!!:|||||||||! ! !:!!!.!..!!.! !| eThrLeuAsnCysAsnAspIleMetGluGlnSerGlyAlaIleGlyThrAlaIleT 1682612 : aacccTAAATTGCAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAGCGATCT : 1682668 341 : yrSerAlaLeuTrpThrIleLeuProMetAspLysPheGlyArgMetLeuArgAsn : 358 |||||..! !||| !! ::: ||| ..!!!!|||!!. yrSerCysAsnTrpGluArgAsnValTyrAsnHisPhe---TyrGlnPheArgLys 1682669 : ACAGTTGTAATTGGGAGAGGAAtgtttataatcatttt---taccAGTTCAGAAAG : 1682719 359 : AspLeuIleMetValMetLysArgSerArgArgValCysCysLeuThrAlaAsnGl : 377 |||:!!!!:!!:|||||| !|||:!!!:!||| !|||! !:!!:!!||| AspMetMetIleValMetValArgAlaLysArgProCysTyrIleSerAlaAlaLy 1682720 : GATATGATGATTGTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGCAGCGAA : 1682776 378 : yPhePheProValSerLeuGluThrTyrThrLys >>>> Target Intron 1 : 389 !|||||||||:!!|||||||||:!!!:!|||||| 201 bp sPhePheProIleSerLeuGluSerPheThrLys++ 1682777 : ATTCTTTCCAATCTCCCTTGAATCGTTCACGAaggt.................... : 1682814 390 : >>>> IleLeuSerThrAlaValSerTyrPheThrLeuLeu : 400 :!:||||||.!!.!!!.!||||||!:!||||||||| ++ValLeuSerAlaThrAlaSerTyrTyrThrLeuLeu 1682815 : .....agGTGTTAAGTGCAACAGCATCTTATTATACACTGCTG : 1683048 vulgar: AfOr83 302 400 . KQ414915.1 1682556 1683048 + 175 M 50 150 G 1 0 M 35 105 5 0 2 I 0 197 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682557 1683048 175 + . gene_id 8 ; sequence AfOr83 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1682557 1682811 . + . KQ414915.1 exonerate:protein2genome:local exon 1682557 1682811 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1682812 1682813 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1682812 1683012 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1683011 1683012 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1683013 1683048 . + . KQ414915.1 exonerate:protein2genome:local exon 1683013 1683048 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1682557 1683048 175 + . alignment_id 8 ; Query AfOr83 ; Align 1682557 303 150 ; Align 1682707 354 105 ; Align 1683013 389 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr83 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 152 -> 233 Target range: 1681731 -> 1682094 153 : GlySerAsnGluSerGluArgMetPheProPheAsnIleTrpIleAsnLeuProLe : 171 |||!.!!:!!!:..!||||||!!:.!!|||||| .!! ! :!: ! ! !! GlyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAsnLeuPr 1681732 : GGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAACTTGCC : 1681786 172 : uValThrArgThrProTyrTyrGluIleIlePhePheIleGln >>>> Target : 186 !..!:!! !||||||||||||||||||:::||| ! |||:!! 1 oThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681787 : TACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt........... : 1681833 187 : Intron 1 >>>> GlyValSerLeuTyrTyrIleGlyIleSerTyrPheCysP : 199 20 bp !:!!|||:!! :!! ||||||!!!!:!! !|||| ++ThrLeuSerValValHisSerGlyIleCysPheCysCysP 1681834 : ..............agACATTATCTGTGGTGCATTCGGGAATTTGTTTCTGTTGTT : 1681990 200 : heAspAsnIlePheCysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeu : 217 ||||||||.!!.!.||||||:!!::!:!!|||:!!!.!|||||||||!:!|||||| heAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLysIleLeu 1681991 : TCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAGATTTTA : 1682044 218 : ArgTyrArgLeuThrLysLeuCysAspThrGluAsnGluIleArgLys : 233 !:! !!!:!||| !! !:!!! ..! !:!::::... ...||| GlnAsnLysLeuGlnThrValLeuSerGluLysSerSerLysGluLys 1682045 : CAAAACAAACTCCAAACAGTATTGAGTGAGAAatcttcgaaagaaaaa : 1682094 vulgar: AfOr83 152 233 . KQ414915.1 1681731 1682094 + 161 M 33 99 5 0 2 I 0 116 3 0 2 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681732 1682094 161 + . gene_id 9 ; sequence AfOr83 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681732 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681732 1681830 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682094 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682094 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681732 1682094 161 + . alignment_id 9 ; Query AfOr83 ; Align 1681732 153 99 ; Align 1681951 186 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr80 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 743 Query range: 50 -> 407 Target range: 1710818 -> 1713333 51 : ValValIlePheArgAspIleTyrPheThrPheMetTyrAsnGlyAspIleLeuTy : 69 ..!!.!|||.!!..! ||| .!! !.!!:!: !::: !|||! !|||!: ThrAlaIleLeuGluIleIleThrIleAspIleLeuIleSerGlnAspThrLeuPh 1710819 : ACAGCAATTCTTGAGATAATAACAATTGATATTCTCATTTCACAGGACACACTGTT : 1710873 70 : rValIleThrAsnPheLeuThrValMetIleSerPheValLysIleIleIleIleM : 88 !! !||| !!.!.!!|||:!!|||!!:!!: !! !:!!||||||||||||:!:. eAspIleCysThrLeuLeuSerValIleMetProAlaIleLysIleIleIleLeuP 1710874 : CGACATATGCACTCTTCTGTCGGTGATAATGCCCGCTATCAAAATAATCATCCTGT : 1710930 89 : etIleTyrLysLysGluPheIleAspMetIleLeuTyrMetGluLysAsnPheTrp : 106 !.||| !!|||:!!||||||.!! !:!!|||:!!|||! |||::!.!.||| ! heIleAsnLysGluGluPhePheArgLeuIleValTyrThrGluArgGlnPheMet 1710931 : TTATCAACAAGGAGGAGTTTTTCCGTTTGATCGTGTACACAGAGCGACAATTCATG : 1710984 107 : AsnValLysTyrAspPheGlnGluGluGluIleLeuAsnAsnCysArgLysThrCy : 125 |||! ! ! |||:!! .!.|||..!:!!|||:!! !:!!|||!:!::: !|| AsnGlyAspTyrAsnGluAspGluArgLysIleValPheAspCysLysArgLeuCy 1710985 : AACGGGGATTACAACGAGGACGAGAGGAAGATTGTGTTCGATTGTAAACGCCTGTG : 1711041 126 : sIlePhePheValThrSerValSerThrIleGlyIleCysAlaMetIleSerTyrA : 144 |! !||||||..! !! !:!!|||:!!:!: !:!!! ..!:!::!!||||||! sThrPhePheThrCysPheLeuSerSerValThrLeuSerCysValLeuSerTyrV 1711042 : TACATTCTTCACTTGTTTCCTCTCATCTGTGACTTTATCGTGCGTTCTCTCTTACG : 1711098 145 : laIleThrProIleIle{G} >>>> Target Intron 1 >>>> {lu}Tyr : 151 .!:!!||||||||| !{ } 119 bp { !} !! alValThrProIleTyr{M}++ ++{et}Asn 1711099 : TCGTCACTCCAATTTAC{A}gt.........................ag{TG}AAT : 1711238 152 : TyrThrGluAsnLeuSerGluArgIleLeuProPheHisValTrpLeuAsnLeuPr : 170 ! !..!||| !|||!!:||||||||||||||| ! :!!|||:!!:!!:!!|| IleGlyArgAsnGluSerAspArgIleLeuProPheLysMetTrpIleAspIlePr 1711239 : ATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTGGATTGATATACC : 1711295 171 : oIleIleSerValThrProTyrTyrGluIleLeuPheAlaAlaGlu >>>> Tar : 186 | ! !|||:!!|||||||||:::||||||...|||... !:!! o---ThrSerMetThrProTyrPheGluIlePhePheThrLeuGln++ 1711296 : G---ACATCGATGACACcgtattttgaaatattcttcaccTTACAGgt........ : 1711342 187 : get Intron 2 >>>> ValLeuSerIleTyrCysValAlaLeuCysTyrPheC : 198 546 bp ||||||||| ||| :!!!.!:!! !!||| !| ++ValLeuSerAlaTyrGlnIleGlyValSerTyrGlyC 1711343 : .................agGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGGTT : 1711922 199 : ysPheAspAsnValPheCysIleLeuAlaValHisLeuAlaGlyGlnPheAsnIle : 216 ||||||||||||||.!.||||||:!! !:!!||||||||| !||||||...||| ysPheAspAsnValLeuCysIleMetAsnLeuHisLeuAlaThrGlnPheArgIle 1711923 : GCTTCGACAACGTTCTATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAATA : 1711976 217 : LeuLysHisLysPheAlaLysLeuCysAspThrAspSerLysIleSerLysLysAs : 235 |||:!!|||!:!.!.!.!!!.:!! !! ! ! ! |||||| !!! !:!! ! LeuGlnHisArgLeuValAsnIleAsnGlyLeuLysSerLysGlnThrProGluLy 1711977 : CTGCAACATAGACTGGTGAATATAAACGGTCTGAAGAGCAAACAGACACCGGAGAA : 1712033 236 : pGluGluSerArgLeu<-><->AlaIleGluHisValGlnValLeuTyrGluArgP : 252 ! |||!!! !:!! :!!! !||| !!.!.!. !! !|||!!: !| sGlyGluThrSerIleIleAspSerThrGluPheAlaAspAsnSerTyrAspValP 1712034 : AGGTGAAACGTCGATTATAGATTCGACAGAATTTGCGGATAACTCTTACGACGTTT : 1712090 253 : heLysGluTyrValArgArgHisGlnSerLeuIleAsnTyrCysGluArgLeuGlu : 270 |||||..!! !||||||!:!||||||||||||!!: !!:!||||||:::|||||| heLysArgCysValArgGlnHisGlnSerLeuMetAlaPheCysGluLysLeuGlu 1712091 : TCAAAAGATGCGTTCGTCAACATCAATCTCTGATGGCTTTCTgcgagaaactcgaa : 1712144 271 : AsnValTyrThrValIleIleLeuGlyGlnValValIleSerSerValLeuIleCy : 289 ...:::!:!!:!:!!|||||||||||||||:!!:!!:!:! !|||:!!!!!!!:|| GluMetPheSerMetIleIleLeuGlyGlnLeuLeuValPheSerIlePheMetCy 1712145 : gaaatgTTCAGTATGATTATACTGGGGCAATTGTTAGTGTTCAGTATTTTTATGTG : 1712201 290 : sLeuPheGlyTyrGlnIleLeuVal >>>> Target Intron 3 >>>> As : 298 |||| !! !! !|||:!!|||:!! 142 bp sLeuAspValCysGlnValLeuLeu++ ++Pr 1712202 : TCTCGACGTGTGCCAAGTACTTCTGgt.........................agCC : 1712370 299 : nAspValSerIleGlyArgArgSerIlePheValPheLeuLeuLeuGlySerMetC : 317 ! !!.!|||:!:|||!:!!:!! ||||||...||| ||| !|||!!!|||| oGlyAlaSerValGlyLysGlnMetIlePheThrPheHisLeuAlaGlyCysMetC 1712371 : AGGTGCATCTGTGGGTAAACAGAtgattttcacgtttcacctAGCGGGATGTATGT : 1712427 318 : ysLeuLeuPheMetPheThrTyrSerCysAsnSerValIleValHisSerGluAsn : 335 ||! !|||.!.||||||||||||||||||:!!!!!:!!|||..!.!.||| !||| ysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleThrGluSerLeuAsn 1712428 : GTCAATTGCTGATGTTTACGTACAGCTGCGATTGTATAATAACGGAAAGTTTGAAC : 1712481 336 : IleAlaThrGlyAlaTyrSerAlaLeuTrpThrThrMetProMetAsnLysPheGl : 354 :!:.!! !!.!!.!|||..!!.!! !||| !! !:!!||||||!:!! ! || ValThrGluAlaValTyrAspGlyProTrpProArgLeuProMetSerThrArgGl 1712482 : GTGACGGAAGCGGTGTACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGG : 1712538 355 : yArgMetLeuArgAsnAspLeuIleLeuValIleGluArgSerArgArgValCysC : 373 |||||||:!!|||!!.|||||||||||||||||| !||||||||| ! !|||| yArgMetIleArgLysAspLeuIleLeuValIleIleArgSerArgValProCysC 1712539 : AAGAATGATAAGGAAGGATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTT : 1712595 374 : ysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrThr >>>> : 390 |||||||||||!..||||||||| !:!!||||||||||||||||||! ! ysLeuThrAlaArgGlyPhePheValIleSerLeuGluThrTyrThrLys++ 1712596 : GCTTGACCGCCAGAGGATTCTTCGTAATATCTTTGGAAACGTATACGAAGgt.... : 1712648 391 : Target Intron 4 >>>> IleLeuSerThrAlaValSerTyrPheThrLeu : 400 634 bp :!!:!!||||||||||||||||||||||||||| ++ValIleSerThrAlaValSerTyrPheThrLeu 1712649 : .....................agGTTATAAGTACAGCAGTGTCGTACTTCACACTG : 1713310 401 : LeuArgAsnAsnLeuGluGlu : 407 ||||||.!...!:!!|||||| LeuArgGlnArgIleGluGlu 1713311 : TTAAGGCAACGTATAGAGGAA : 1713333 vulgar: AfOr80 50 407 . KQ414915.1 1710818 1713333 + 743 M 99 297 S 0 1 5 0 2 I 0 115 3 0 2 S 1 2 M 20 60 G 1 0 M 14 42 5 0 2 I 0 542 3 0 2 M 55 165 G 0 6 M 57 171 5 0 2 I 0 138 3 0 2 M 92 276 5 0 2 I 0 630 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1710819 1713333 743 + . gene_id 1 ; sequence AfOr80 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1710819 1711116 . + . KQ414915.1 exonerate:protein2genome:local exon 1710819 1711116 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711117 1711118 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711117 1711235 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711234 1711235 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711236 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711236 1711339 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712227 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712228 1712229 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712228 1712369 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1712368 1712369 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1712370 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712370 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713333 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713333 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1710819 1713333 743 + . alignment_id 1 ; Query AfOr80 ; Align 1710819 51 297 ; Align 1711238 151 60 ; Align 1711298 172 42 ; Align 1711886 186 165 ; Align 1712057 241 171 ; Align 1712370 298 276 ; Align 1713280 390 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr80 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 557 Query range: 153 -> 404 Target range: 1694364 -> 1696257 154 : GluAsnLeuSerGluArgIleLeuProPheHisValTrpLeuAsnLeuProIleIl : 172 :!!|||! !|||||||||!!:|||||||||:!!:!!|||:!!:!!!!!||| ! LysAsnGlnSerGluArgMetLeuProPheAsnMetTrpValAspPhePro---Th 1694365 : AAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTGGGTTGACTTTCCT---AC : 1694416 173 : eSerValThrProTyrTyrGluIleLeuPheAlaAlaGlu >>>> Target In : 186 !.!!:!!:!!||||||||||||:!!|||||| ! !:!! 409 rGlyLeuSerProTyrTyrGluValLeuPheIleIleGln++ 1694417 : AGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGgt.............. : 1694460 187 : tron 1 >>>> ValLeuSerIleTyrCysValAlaLeuCysTyrPheCysPheA : 200 bp ..!|||!!!:!:||| !|||!.!:!!||||||.!.||||||| ++ThrLeuCysValTyrHisValGlyIleCysTyrMetCysPheA 1694461 : ...........agACACTTTGCGTGTACCATGTCGGTATATGTTACATGTGCTTCG : 1694909 201 : spAsnValPheCysIleLeuAlaValHisLeuAlaGlyGlnPheAsnIleLeuLys : 218 |||||:!!.!! !!:!!||| !:!!|||:!!||| !||||||..!||||||:!! spAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGlnPheArgIleLeuGln 1694910 : ACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAATTTCGTATCCTTCAA : 1694963 219 : HisLysPheAlaLysLeuCysAspThrAspSerLysIleSerLysLysAspGluGl : 237 :!!::!||| !!!.||| !!:!!..! !..!||| !!!! ! ||| TyrArgPheMetAsnLeuSerAsnValIleGluLysGlnThrAspGlyArgGluLe 1694964 : TACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAACAGACGGTcgagaatt : 1695020 238 : uSerArgLeuAlaIleGluHisValGlnValLeuTyrGluArgPheLysGluTyrV : 256 ... !! !.!. !..! ! ! !||| !!:!!!.|||...! !| uGluIleGlyTyrThrAsnPheThrValAspSerTyrLeuGlnLeuLysSerCysV 1695021 : ggaaattggtTACACAAATTTCACAGTCGATAGTTACTTACAATTGAAGAGTTGCG : 1695077 257 : alArgArgHisGlnSerLeuIleAsnTyrCysGluArgLeuGluAsnValTyrThr : 274 ||!:! !||||||:!!|||! !..!||||||:!!!:!|||||||||:!!!:!:!! alGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeuGluAsnIlePheSer 1695078 : TGCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTGGAGAACATATTTTCG : 1695131 275 : ValIleIleLeuGlyGlnValValIleSerSerValLeuIleCysLeuPheGlyTy : 293 :!!:!!:!:||||||||||||:!!.!! !:!!:!!:!!:!!|||||| ! ||||| LeuLeuValLeuGlyGlnValLeuPheLeuAlaMetValLeuCysLeuValGlyTy 1695132 : TTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTACTTTGCCTCGTGGGATA : 1695188 294 : rGlnIleLeuVal >>>> Target Intron 2 >>>> AsnAspValSerIl : 302 ||||:!!!!!:!! 415 bp !..||| ! !! rGlnLeuPheLeu++ ++ThrAspSerProPr 1695189 : TCAGCTATTTCTGgt.........................agACAGACTCACCACC : 1695630 303 : eGlyArgArgSerIlePheValPheLeuLeuLeuGlySerMetCysLeuLeuPheM : 321 !..!|||!.! ! !!!.|||.!! !||| !|||!!!:!!|||! !||||||| oSerArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrLeuCysGlnLeuPheM 1695631 : TTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTTTGTGTCAACTTTTTA : 1695687 322 : etPheThrTyrSerCysAsnSerValIleValHisSerGluAsnIleAlaThrGly : 339 |||||||||||||||||:!!.!!:!!! ! !.!.||| !:!!:!!::!! !!.! etPheThrTyrSerCysAspGlyLeuThrArgGluSerMetAspValSerArgAla 1695688 : TGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATGGACGTTAGCAGAGCT : 1695741 340 : AlaTyrSerAlaLeuTrpThrThrMetProMetAsnLysPheGlyArgMetLeuAr : 358 !.!!:!:!! !! !|||.!!!.!:!!||||||:!!!:! !|||!:!! :!!|| ValPheAlaArgProTrpAlaAsnLeuProMetAspArgAsnGlyLysSerValAr 1695742 : GTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAATGGGAAAAGTGTGCG : 1695798 359 : gAsnAspLeuIleLeuValIleGluArgSerArgArgValCysCysLeuThrAlaA : 377 |.!...!:!!:!!:!!|||||| !||||||!.!||| !|||||||||||||||! gGlnSerMetLeuMetValIleMetArgSerAsnArgCysCysCysLeuThrAlaS 1695799 : ACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTTGCTGCTTAACAGCCA : 1695855 378 : snGlyPhePheProValSerLeuGluThrTyrThrThr >>>> Target Intr : 390 :!||||||||||||||||||||||||||||||||| ! 319 bp erGlyPhePheProValSerLeuGluThrTyrThrGly++ 1695856 : GCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGgt................ : 1695896 391 : on 3 >>>> IleLeuSerThrAlaValSerTyrPheThrLeuLeuArgAsnAsn : 404 :!!||||||||||||:!!|||||||||||||||||||||.!.::: ++ValLeuSerThrAlaMetSerTyrPheThrLeuLeuArgGlnSer 1695897 : .........agGTCCTCAGCACTGCAATGTCATACTTTACACTACTGAGACAATCG : 1696255 vulgar: AfOr80 153 404 . KQ414915.1 1694364 1696257 + 557 M 17 51 G 1 0 M 14 42 5 0 2 I 0 405 3 0 2 M 112 336 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694365 1696257 557 + . gene_id 2 ; sequence AfOr80 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694365 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694365 1694457 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 2 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696257 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696257 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694365 1696257 557 + . alignment_id 2 ; Query AfOr80 ; Align 1694365 154 51 ; Align 1694416 172 42 ; Align 1694867 186 336 ; Align 1695618 298 276 ; Align 1696213 390 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr80 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 375 Query range: 235 -> 407 Target range: 1688466 -> 1690091 236 : GluGluSerArgLeuAlaIleGluHisValGlnValLeuTyrGluArgPheLysGl : 254 !!:||| !!! ! ! !! !|||:!!..!.!. !! !||| !:!.!.! !!! AspGluArgThrAsnMetThrGluTyrThrAsnLysCysTyrThrLysLeuIleAs 1688467 : GACGAGCGAACGAACATGACCGAATACACGAACAAATGTTACACCAAGCTGATAGA : 1688521 255 : uTyrValArgArgHisGlnSerLeuIleAsnTyrCysGluArgLeuGluAsnValT : 273 :! !:!!!:!!.!|||||||||||||||.!.!:!|||! !!:!||||||||||||| pCysIleLysAsnHisGlnSerLeuIleGluPheCysValLysLeuGluAsnValT 1688522 : TTGCATCAAAAATCATCAGTCGTTGATCGAGTTCTGCGTGAAACTCGAGAACGTGT : 1688578 274 : yrThrValIleIleLeuGlyGlnValValIleSerSerValLeuIleCysLeuPhe : 291 |||||:!!! !|||||||||!!.:!!|||:!!! !|||:!!|||!!:|||!!! ! yrThrLeuThrIleLeuGlyHisIleValValPheSerLeuLeuMetCysPheAsp 1688579 : ACACGTTGACTATACTCGGCCACATAGTGGTCTTCAGCTTGTTGATGTGCTTCGAC : 1688632 292 : GlyTyrGlnIleLeuVal >>>> Target Intron 1 >>>> AsnAspVal : 300 !|||:!!:!!:!!:!! 816 bp ! ||| ThrTyrGluValValLeu++ ++AlaLysVal 1688633 : ACGTACGAGGTAGTTCTGgt.........................agGCAAAGGTA : 1689475 301 : SerIleGlyArgArgSerIlePheValPheLeuLeuLeuGlySerMetCysLeuLe : 319 !!! ! !! !||| !||||||:!!|||! !:!!:!!||||||.!. !! :: ProThrThrThrArgLeuIlePheLeuPheHisMetIleGlySerPheIleHisIl 1689476 : CCTACCACGACGCGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCacat : 1689532 320 : uPheMetPheThrTyrSerCysAsnSerValIleValHisSerGluAsnIleAlaT : 338 :......|||||||||||||||..!.!!:!!|||! !.!.||| !:!!||||||| eIlePhePheThrTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleAlaT 1689533 : aattttcttcacgtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCAA : 1689589 339 : hrGlyAlaTyrSerAlaLeuTrpThrThrMetProMetAsnLysPheGlyArgMet : 356 ||!.!.!!|||:!!!.!:!!||||||..!:!!|||||||||||| !!|||!:!||| hrAlaThrTyrAlaGlyMetTrpThrValLeuProMetAsnLysValGlyLysMet 1689590 : CAGCAACGTATGCAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAATG : 1689643 357 : LeuArgAsnAspLeuIleLeuValIleGluArgSerArgArgValCysCysLeuTh : 375 :!!|||...:!!:!!! |||:!!! !! !|||||| !!:! !||||||:!!|| IleArgGlyAsnMetLysLeuMetThrValArgSerLeuGlnProCysCysIleTh 1689644 : ATACGAGGAAATATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAAC : 1689700 376 : rAlaAsnGlyPhePheProValSerLeuGluThrTyrThrThr >>>> Target : 390 ||||..!|||||||||||||||||||||:!!||| !|||.!! 2 rAlaGlyGlyPhePheProValSerLeuLysThrAlaThrAla++ 1689701 : TGCTGGTGGATTCTTTCCTGTCTCCTTGAAAACTGCTACCGCGgt........... : 1689747 391 : Intron 2 >>>> IleLeuSerThrAlaValSerTyrPheThrLeuLeuArgA : 403 93 bp :!!:!!|||:!!.!!:!!|||||||||||||||:!!|||. ++LeuMetSerSerThrMetSerTyrPheThrLeuMetArgG 1689748 : ..............agCTAATGAGTTCCACAATGTCGTATTTCACGCTCATGAGAG : 1690077 404 : snAsnLeuGluGlu : 407 !.!..! !! ||| luArgSerAlaGlu 1690078 : AGAGATCGGCTGAA : 1690091 vulgar: AfOr80 235 407 . KQ414915.1 1688466 1690091 + 375 M 62 186 5 0 2 I 0 812 3 0 2 M 92 276 5 0 2 I 0 289 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688467 1690091 375 + . gene_id 3 ; sequence AfOr80 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688467 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688467 1688652 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690091 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690091 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688467 1690091 375 + . alignment_id 3 ; Query AfOr80 ; Align 1688467 236 186 ; Align 1689469 298 276 ; Align 1690038 390 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr80 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 333 Query range: 147 -> 300 Target range: 1699025 -> 1699980 148 : IleIleGluTyrTyrThrGluAsnLeuSerGluArgIleLeuProPheHisValTr : 166 |||:!! ...||| !|||!!:|||:!:|||||||||:!!:!!|| IleLeuAlaAsnIleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTr 1699026 : ATTTTAgcaaatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTG : 1699080 167 : pLeuAsnLeuProIleIleSerValThrProTyrTyrGluIleLeuPhe--AlaAl : 184 |:!!:!!|||||| :!:||||||:!!||| |||||||||:!!|||##|||:! pValAspLeuPro---LeuSerValSerProThrTyrGluIleValPhe##AlaSe 1699081 : GGTTGATTTGCCG---CTGTCTGTGTCACCAACGTACGAAATAGTGTTCGTGCTTC : 1699133 185 : a{G} >>>> Target Intron 1 >>>> {lu}ValLeuSerIleTyrCysV : 192 !{|} 497 bp {||}|||||||||:!:||| !| r{G}++ +-{lu}ValLeuSerLeuTyrHisV 1699134 : A{G}gt.........................ac{AG}GTTCTGTCTTTGTACCACG : 1699654 193 : alAlaLeuCysTyrPheCysPheAspAsnValPheCysIleLeuAlaValHisLeu : 210 ||!.!:!!||||||.!!||||||||||||:!!!!.|||:!::!! !:!!||| ! alGlyValCysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAla 1699655 : TTGGTGTATGTTACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCG : 1699708 211 : AlaGlyGlnPheAsnIleLeuLysHisLysPheAlaLysLeuCysAspThrAspSe : 229 ||| !||||||..!||||||:!!:!!!:!!!.:!!!!.||| !!||||||:!!!! AlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsnAr 1699709 : GCTACTCAATTTCGTATACTGCAATACAGGTTATCGAACTTGGGTGATACGAACAG : 1699765 230 : rLysIleSerLysLysAspGluGluSerArgLeuAlaIleGluHisValGlnValL : 248 !||| ! ! ! ! :!!|||...||| ! ! ! !... !!.!:!! !! gLysGlnValAspAspAsnGluSerSerAlaAlaLeuSerArgPheAlaGluAsnC 1699766 : GAAGCAAGTAGATGACAATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACT : 1699822 249 : euTyrGluArgPheLysGluTyrValArgArgHisGlnSerLeuIleAsnTyrCys : 266 !|||:!! !||||||.!.! !||||||!:!||||||!:!! !|||!..|||||| ysTyrLysAlaPheLysAsnCysValArgGlnHisGlnAsnHisIleThrTyrCys 1699823 : GTTATAAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCATATCACGTACTGT : 1699876 267 : GluArgLeuGluAsnValTyrThrValIleIleLeuGlyGlnValValIleSerSe : 285 .!.||||||.!..!.:!!!:!|||||||||:!!||||||!!.:!!:!!:!!! !|| HisArgLeuAsnGluIlePheThrValIleValLeuGlyHisIleLeuValPheSe 1699877 : CACAGATTGAACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAG : 1699933 286 : rValLeuIleCysLeuPheGlyTyrGlnIleLeuValAsnAspVal : 300 |:!!|||||||||||| !!|||!:!|||:!:||||||.!.:!!:!! rLeuLeuIleCysLeuValGlyPheGlnValLeuValGluAsnIle 1699934 : CCTTCTGATATGTCTGGTTGGATTCCAAGTGCTCGTAGAAAACATC : 1699980 vulgar: AfOr80 147 300 . KQ414915.1 1699025 1699980 + 333 M 23 69 G 1 0 M 11 33 F 0 2 M 2 6 S 0 1 5 0 2 I 0 493 3 0 2 S 1 2 M 115 345 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699026 1699980 333 + . gene_id 4 ; sequence AfOr80 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1699026 1699136 . + . KQ414915.1 exonerate:protein2genome:local exon 1699026 1699136 . + . insertions 0 ; deletions 1 ; frameshifts 2 KQ414915.1 exonerate:protein2genome:local splice5 1699137 1699138 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699137 1699633 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699632 1699633 . + . intron_id 0 ; splice_site "AC" KQ414915.1 exonerate:protein2genome:local cds 1699634 1699980 . + . KQ414915.1 exonerate:protein2genome:local exon 1699634 1699980 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699026 1699980 333 + . alignment_id 4 ; Query AfOr80 ; Align 1699026 148 69 ; Align 1699095 172 33 ; Align 1699130 183 6 ; Align 1699636 186 345 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr80 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 300 Query range: 297 -> 407 Target range: 1708160 -> 1709249 298 : AsnAspValSerIleGlyArgArgSerIlePheValPheLeuLeuLeuGlySerMe : 316 .!.|||..! !!||| !!:!||| !! !|||:!!|||! !||| !|||!!!:! GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLe 1708161 : GAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCT : 1708215 317 : tCysLeuLeuPheMetPheThrTyrSerCysAsnSerValIleValHisSerGluA : 335 !|||! !|||!!.||||||||||||||||||:!!!!!:!!||| !.!.||| !| uCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuA 1708216 : GTGCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGA : 1708272 336 : snIleAlaThrGlyAlaTyrSerAlaLeuTrpThrThrMetProMetAsnLysPhe : 353 ||:!:|||!.!!.! !|||..!..!! !|||! ! !:!!||||||:!!!:!! ! snValAlaAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSer 1708273 : ACGTGGCCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCT : 1708326 354 : GlyArgMetLeuArgAsnAspLeuIleLeuValIleGluArgSerArgArgValCy : 372 |||||||||||||||!!.||||||! !!!!||||||! !||||||||| ! !|| GlyArgMetLeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCy 1708327 : GGGCGAATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTG : 1708383 373 : sCysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrThr >> : 390 ||||||||||||| !|||||||||||||||||||||||||||||||||:!! sCysLeuThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708384 : CTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt.. : 1708439 391 : >> Target Intron 1 >>>> IleLeuSerThrAlaValSerTyrPheThrL : 400 759 bp |||||||||||||||!.!||||||||||||| ++IleLeuSerThrAlaAlaSerTyrPheThrL 1708440 : .......................agATTTTAAGTACCGCAGCGTCATACTTCACAC : 1709226 401 : euLeuArgAsnAsnLeuGluGlu : 407 ||||||||!!..!. !! !||| euLeuArgLysGlnGluAlaGlu 1709227 : TGCTACGAAAACAAGAAGCAGAA : 1709249 vulgar: AfOr80 297 407 . KQ414915.1 1708160 1709249 + 300 M 92 276 5 0 2 I 0 755 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1708161 1709249 300 + . gene_id 5 ; sequence AfOr80 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709249 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709249 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1708161 1709249 300 + . alignment_id 5 ; Query AfOr80 ; Align 1708161 298 276 ; Align 1709196 390 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr80 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 284 Query range: 183 -> 297 Target range: 1702010 -> 1702352 184 : AlaGluValLeuSerIleTyrCysValAlaLeuCysTyrPheCysPheAspAsnVa : 202 |||:!!|||||||||:!:||| !|||!.!:!!||||||.!!||||||||||||:! AlaGlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLe 1702011 : GCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCT : 1702065 203 : lPheCysIleLeuAlaValHisLeuAlaGlyGlnPheAsnIleLeuLysHisLysP : 221 !!!.|||:!::!! !:!!||| !||| !||||||..!||||||:!!:!!!:!! uLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgL 1702066 : TTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGT : 1702122 222 : heAlaLysLeuCysAspThrAspSerLysIleSerLysLysAspGluGluSerArg : 239 !.:!!!!.||| !!||||||:!!!!!||| ! ! ! ! :!!|||...||| ! euSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAla 1702123 : TATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCA : 1702176 240 : LeuAlaIleGluHisValGlnValLeuTyrGluArgPheLysGluTyrValArgAr : 258 ! ! !... !!.!:!! !! !|||:!! !||||||.!.! !||||||!: AlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGl 1702177 : GCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACA : 1702233 259 : gHisGlnSerLeuIleAsnTyrCysGluArgLeuGluAsnValTyrThrValIleI : 277 !||||||!:!! !|||!..||||||.!.||||||.!..!.:!!!:!|||||||||: nHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleV 1702234 : ACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTG : 1702290 278 : leLeuGlyGlnValValIleSerSerValLeuIleCysLeuPheGlyTyrGlnIle : 295 !!||||||!!.:!!:!!:!!! !|||:!!|||||||||||| !!|||!:!|||:!: alLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnVal 1702291 : TACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTG : 1702344 296 : LeuVal : 297 |||||| LeuVal 1702345 : CTCGTG : 1702352 vulgar: AfOr80 183 297 . KQ414915.1 1702010 1702352 + 284 M 114 342 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702011 1702352 284 + . gene_id 6 ; sequence AfOr80 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702011 1702352 . + . KQ414915.1 exonerate:protein2genome:local exon 1702011 1702352 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702011 1702352 284 + . alignment_id 6 ; Query AfOr80 ; Align 1702011 184 342 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr80 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 263 Query range: 299 -> 396 Target range: 1702965 -> 1703256 300 : ValSerIleGlyArgArgSerIlePheValPheLeuLeuLeuGlySerMetCysLe : 318 |||!!! !!.!|||||| !! !|||||||||! !:!!:!!||||||:!:|||! ValThrProAlaArgArgLeuThrPheValPheHisIleValGlySerLeuCysGl 1702966 : GTGACTCCAGCGAGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCA : 1703020 319 : uLeuPheMetPheThrTyrSerCysAsnSerValIleValHisSerGluAsnIleA : 337 !|||!!.:!:|||||||||||||||:!!.!!:!!|||! !.!.||| !||||||! nLeuLeuLeuPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleG 1703021 : ACTATTGCTATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCG : 1703077 338 : laThrGlyAlaTyrSerAlaLeuTrpThrThrMetProMetAsnLysPheGlyArg : 355 .!|||!.! !||| !!.!! !|||! ! !:!!||||||:!!||| !|||||| lyThrAlaIleTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArg 1703078 : GGACTGCGATATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGA : 1703131 356 : MetLeuArgAsnAspLeuIleLeuValIleGluArgSerArgArgValCysCysLe : 374 ! !||||||!..||||||! !:!!||||||! !|||||||||!:! ! !!||||| ArgLeuArgArgAspLeuThrMetValIleValArgSerArgLysSerSerCysLe 1703132 : AGGTTGAGAAGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTT : 1703188 375 : uThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrThrIleLeuSerT : 393 |||||||!:!|||||||||||||||||||||||||||! !||||||:!!!!!!:! uThrAlaSerGlyPhePheProValSerLeuGluThrCysThrThrValPheAsnP 1703189 : AACTGCCAGCGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATT : 1703245 394 : hrAlaValSer : 396 !:!! !!||| heSerPheSer 1703246 : TCTCATTCTCT : 1703256 vulgar: AfOr80 299 396 . KQ414915.1 1702965 1703256 + 263 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702966 1703256 263 + . gene_id 7 ; sequence AfOr80 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702966 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1702966 1703256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702966 1703256 263 + . alignment_id 7 ; Query AfOr80 ; Align 1702966 300 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr80 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 176 Query range: 303 -> 402 Target range: 1682556 -> 1683051 304 : ArgArgSerIlePheValPheLeuLeuLeuGlySerMetCysLeuLeuPheMetPh : 322 !:!|||! !:!:|||:!! !! !!!!||||||.!!:!! :::|||:::.. LysArgLeuLeuPheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePheLeuIl 1682557 : AAACGATTGTTGTTCCTAAATTACTTTCTCGGTGGAGTGATacagatatttttaat : 1682611 323 : eThrTyrSerCysAsnSerValIleValHisSerGluAsnIleAlaThrGlyAlaT : 341 .||| !:!||||||..!:!!!!:! !!!.|||! !|||!.!|||!.! !| eThrLeuAsnCysAsnAspIleMetGluGlnSerGlyAlaIleGlyThrAlaIleT 1682612 : aacccTAAATTGCAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAGCGATCT : 1682668 342 : yrSerAlaLeuTrpThrThrMetProMetAsnLysPheGlyArgMetLeuArgAsn : 359 |||||..! !||| !! !! ||| ||| ..!!!!|||!!. yrSerCysAsnTrpGluArgAsnValTyrAsnHisPhe---TyrGlnPheArgLys 1682669 : ACAGTTGTAATTGGGAGAGGAAtgtttataatcatttt---taccAGTTCAGAAAG : 1682719 360 : AspLeuIleLeuValIleGluArgSerArgArgValCysCysLeuThrAlaAsnGl : 378 |||:!!!!::!!|||!!:! !|||:!!!:!||| !|||! !:!!:!!||| AspMetMetIleValMetValArgAlaLysArgProCysTyrIleSerAlaAlaLy 1682720 : GATATGATGATTGTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGCAGCGAA : 1682776 379 : yPhePheProValSerLeuGluThrTyrThrThr >>>> Target Intron 1 : 390 !|||||||||:!!|||||||||:!!!:!|||! 201 bp sPhePheProIleSerLeuGluSerPheThrLys++ 1682777 : ATTCTTTCCAATCTCCCTTGAATCGTTCACGAaggt.................... : 1682814 391 : >>>> IleLeuSerThrAlaValSerTyrPheThrLeuLeuArg : 402 :!:||||||.!!.!!!.!||||||!:!|||||||||||| ++ValLeuSerAlaThrAlaSerTyrTyrThrLeuLeuArg 1682815 : .....agGTGTTAAGTGCAACAGCATCTTATTATACACTGCTGCGT : 1683051 vulgar: AfOr80 303 402 . KQ414915.1 1682556 1683051 + 176 M 50 150 G 1 0 M 35 105 5 0 2 I 0 197 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682557 1683051 176 + . gene_id 8 ; sequence AfOr80 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1682557 1682811 . + . KQ414915.1 exonerate:protein2genome:local exon 1682557 1682811 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1682812 1682813 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1682812 1683012 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1683011 1683012 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1683013 1683051 . + . KQ414915.1 exonerate:protein2genome:local exon 1683013 1683051 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1682557 1683051 176 + . alignment_id 8 ; Query AfOr80 ; Align 1682557 304 150 ; Align 1682707 355 105 ; Align 1683013 390 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr80 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 247 -> 297 Target range: 1677740 -> 1677890 248 : LeuTyrGluArgPheLysGluTyrValArgArgHisGlnSerLeuIleAsnTyrCy : 266 :!!! ::::::|||:::::: :!!||||||||| ! ! !||||||:!!||| MetSerGlnLysPheGluLysCysLeuArgArgHisTyrLeuLeuIleAspTyrVa 1677741 : ATGTCGcagaaattcgagaaatgcTTGCGTCGACACTATTTGCTCATTGACTACGT : 1677795 267 : sGluArgLeuGluAsnValTyrThrValIleIleLeuGlyGlnValValIleSerS : 285 |||...|||...|||:::::!! ! !! !:!!||| !|||:!!:!!! !|||| lGluGluLeuAsnAsnLeuPheLysTyrThrLeuLeuLeuGlnMetMetThrSerS 1677796 : AGAGgaattgaataatttgttCAAATACACCCTTCTGTTACAGATGATGACCTCGA : 1677852 286 : erValLeuIleCysLeuPheGlyTyrGlnIleLeuVal : 297 ||:!!|||||||||:!!! !||||||:!! !|||||| erLeuLeuIleCysMetSerGlyTyrGluCysLeuVal 1677853 : GTTTGTTAATCTGTATGTCTGGTTACGAATGTTTAGTG : 1677890 vulgar: AfOr80 247 297 . KQ414915.1 1677740 1677890 + 113 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1677741 1677890 113 + . gene_id 9 ; sequence AfOr80 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1677741 1677890 . + . KQ414915.1 exonerate:protein2genome:local exon 1677741 1677890 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1677741 1677890 113 + . alignment_id 9 ; Query AfOr80 ; Align 1677741 248 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr95 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 1183 Query range: 0 -> 403 Target range: 1710209 -> 1713330 1 : MetGluLysAspAspPheSerIleAsnLeuSerSerIlePheIleLysLeuMetGl : 19 .!.:!!! ||||||!!..!!.!!!:!:!!!!!|||!!:|||:!:|||:!!!!:|| PheLysThrAspAspLeuGlyPheSerValThrSerMetPheValLysMetIleGl 1710210 : TTCAAGACTGACGACTTAGGTTTCAGCGTGACTTCGATGTTCGTGAAAATGATCGG : 1710264 20 : yIleTrpMetAlaAsnGlyArgSerGluLysCysValArgAsnValThrIleValT : 38 |:!:|||||||||!!...!!:!! !|||:!! !|||||||||||||||:!: !!| yLeuTrpMetAlaLysAsnGlnPheGluGlnHisValArgAsnValThrLeuPheT 1710265 : ATTGTGGATGGCGAAAAATCAGTTCGAGCAACATGTCAGAAACGTGACGTTGTTCT : 1710321 39 : yrSerIleIleAlaLeuLeuPheGlyLeuTrpLeuGlnIleThrAspMetTyrTyr : 56 ||:::...... ::: ||||||!!!!:::!!:!! !|||:!!:!!|||:!! yrThrPhePhePheValSerPheGlyPheTyrValGluAlaThrAsnLeuTyrHis 1710322 : ACacattcttcttcgtttccttcGGATTCTACGTGGAAGCTACGAACCTGTACCAC : 1710375 57 : SerTrpGlyAspPheSer >>>> Target Intron 1 >>>> GluCysIle : 65 ||||||||||||.!!||| 468 bp !!: :!: SerTrpGlyAspLeuSer++ ++AspThrLeu 1710376 : TCGTGGGGCGATCTCAGCgt.........................agGACACACTG : 1710870 66 : PheSerMetCysAsnMetLeuSerIleAlaAlaProLeuLeuLysLeuIleThrLe : 84 |||..!!!:|||!.!:!:||||||:!: ! !||| !:!!|||:!!|||! !|| PheAspIleCysThrLeuLeuSerValIleMetProAlaIleLysIleIleIleLe 1710871 : TTCGACATATGCACTCTTCTGTCGGTGATAATGCCCGCTATCAAAATAATCATCCT : 1710927 85 : uIleValHisArgLysAspPhePheTyrLeuIleLeuTyrLeuGlnArgLysPheL : 103 |.!!:!!:!!!:!:!!!!:|||||| !||||||:!!||| !:!!|||:!!|||: uPheIleAsnLysGluGluPhePheArgLeuIleValTyrThrGluArgGlnPheM 1710928 : GTTTATCAACAAGGAGGAGTTTTTCCGTTTGATCGTGTACACAGAGCGACAATTCA : 1710984 104 : euHisGlyAspTyrAspAspTyrGluArgAsnIleValLeuAsnCysLysArgLys : 121 !!:!!|||||||||:!!!!: !!||||||!!.||||||!!!:!!||||||||| ! etAsnGlyAspTyrAsnGluAspGluArgLysIleValPheAspCysLysArgLeu 1710985 : TGAACGGGGATTACAACGAGGACGAGAGGAAGATTGTGTTCGATTGTAAACGCCTG : 1711038 122 : CysThrPhePheThrCysSerLeuThrPheThrThrLeuAlaThrValValSerTy : 140 ||||||||||||||||||! !|||:!!! !..!||||||:!! !|||:!!||||| CysThrPhePheThrCysPheLeuSerSerValThrLeuSerCysValLeuSerTy 1711039 : TGTACATTCTTCACTTGTTTCCTCTCATCTGTGACTTTATCGTGCGTTCTCTCTTA : 1711095 141 : rIleIleAsnProLeuVal{A} >>>> Target Intron 2 >>>> {la}A : 148 |:!!:!!!.!|||:!! !{ } 119 bp { !}| rValValThrProIleTyr{M}++ ++{et}A 1711096 : CGTCGTCACTCCAATTTAC{A}gt.........................ag{TG}A : 1711238 149 : snIleGlyArgAsnGluSerAspArgAlaLeuProPheAsnIleTrpIleAspLeu : 166 |||||||||||||||||||||||||| !|||||||||!!.!!:|||||||||:!! snIleGlyArgAsnGluSerAspArgIleLeuProPheLysMetTrpIleAspIle 1711239 : ATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTGGATTGATATA : 1711292 167 : ProLeuThrIleThrProTyrTyrGluIleThrPheValLeuGlu >>>> Targ : 182 ||| !:!!!!:|||||||||:::|||||| |||...|||:!! ProThrSerMetThrProTyrPheGluIlePhePheThrLeuGln++ 1711293 : CCGACATCGATGACACcgtattttgaaatattcttcaccTTACAGgt......... : 1711342 183 : et Intron 3 >>>> ValIleSerLeuTyrHisIleGlyValSerTyrPheCy : 194 546 bp |||:!!||| !|||!!.||||||||||||||| !|| ++ValLeuSerAlaTyrGlnIleGlyValSerTyrGlyCy 1711343 : ................agGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGGTTG : 1711922 195 : sPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGlnPheGlnValL : 213 |||||||||| !!|||||||||||||||||||||:!!||| !||||||!:!:!!| sPheAspAsnValLeuCysIleMetAsnLeuHisLeuAlaThrGlnPheArgIleL 1711923 : CTTCGACAACGTTCTATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAATAC : 1711979 214 : euGlnHisArgIleSerAsnIleThrAspLeuIleIleGluLys<->GluGluLys : 230 |||||||||||:!: !||||||!.!! !|||! ! !:!!:!! !|||||| euGlnHisArgLeuValAsnIleAsnGlyLeuLysSerLysGlnThrProGluLys 1711980 : TGCAACATAGACTGGTGAATATAAACGGTCTGAAGAGCAAACAGACACCGGAGAAA : 1712033 231 : ArgGluLysLeuIleMetAspSerSerTyrPheAlaSerLysCysTyrAlaIlePh : 249 !!|||! !! !|||!!:||||||!!! ! ||||||..!!!.! !|||! !:!!|| GlyGluThrSerIleIleAspSerThrGluPheAlaAspAsnSerTyrAspValPh 1712034 : GGTGAAACGTCGATTATAGATTCGACAGAATTTGCGGATAACTCTTACGACGTTTT : 1712090 250 : eLysLysCysIleArgGlnHisGlnAlaLeuIleAlaTyrCysArgLysLeuGluG : 268 ||||!:!|||:!!||||||||||||:!!|||!!:|||!:!|||...|||||||||| eLysArgCysValArgGlnHisGlnSerLeuMetAlaPheCysGluLysLeuGluG 1712091 : CAAAAGATGCGTTCGTCAACATCAATCTCTGATGGCTTTCTgcgagaaactcgaag : 1712147 269 : luValPheAsnLeuIleValLeuGluGlnValLeuMetPheSerLeuLeuIleCys : 286 ||:::|||!:!:!!|||:!!|||! !|||:!!|||:!!||||||:!!!!!!!:||| luMetPheSerMetIleIleLeuGlyGlnLeuLeuValPheSerIlePheMetCys 1712148 : aaatgTTCAGTATGATTATACTGGGGCAATTGTTAGTGTTCAGTATTTTTATGTGT : 1712201 287 : LeuAspGlyTyrLeuValLeuMet >>>> Target Intron 4 >>>> Ala : 295 ||||||! !! !! !||||||:!! 142 bp !! LeuAspValCysGlnValLeuLeu++ ++Pro 1712202 : CTCGACGTGTGCCAAGTACTTCTGgt.........................agCCA : 1712370 296 : AspThrSerThrThrThrArgLeuIlePheGlyLeuHisIleThrValCysLeuCy : 314 ! !.!!|||..! !! !!:!:::|||||| ...|||::!.!!! !|||:!!|| GlyAlaSerValGlyLysGlnMetIlePheThrPheHisLeuAlaGlyCysMetCy 1712371 : GGTGCATCTGTGGGTAAACAGAtgattttcacgtttcacctAGCGGGATGTATGTG : 1712427 315 : sGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSerSerSerI : 333 ||||||||||||||||||||||||||||||||||||||||! !||||||! !!:!: sGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleThrGluSerLeuAsnV 1712428 : TCAATTGCTGATGTTTACGTACAGCTGCGATTGTATAATAACGGAAAGTTTGAACG : 1712484 334 : leAlaThrAlaAlaAsnArgGlyProTrpProMetIleProMetThrThrSerGly : 351 !:.!! !|||!.! !! !|||||||||||| :!:||||||!:!|||!!!||| alThrGluAlaValTyrAspGlyProTrpProArgLeuProMetSerThrArgGly 1712485 : TGACGGAAGCGGTGTACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGA : 1712538 352 : ArgMetMetLysLysAspLeuIleLeuValIleMetArgSerGlyThrProCysCy : 370 ||||||!!:!:!|||||||||||||||||||||!!:|||||| !!..!|||||||| ArgMetIleArgLysAspLeuIleLeuValIleIleArgSerArgValProCysCy 1712539 : AGAATGATAAGGAAGGATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTG : 1712595 371 : sLeuThrGlyArgGlyPhePheValValSerLeuGluThrTyrThrSer >>>> : 387 |||||||!.!|||||||||||||||:!!||||||||||||||||||!.! sLeuThrAlaArgGlyPhePheValIleSerLeuGluThrTyrThrLys++ 1712596 : CTTGACCGCCAGAGGATTCTTCGTAATATCTTTGGAAACGTATACGAAGgt..... : 1712648 388 : Target Intron 5 >>>> ValLeuSerThrAlaAlaSerTyrPheThrLeuL : 398 634 bp |||:!!|||||||||!.!|||||||||||||||| ++ValIleSerThrAlaValSerTyrPheThrLeuL 1712649 : ....................agGTTATAAGTACAGCAGTGTCGTACTTCACACTGT : 1713313 399 : euLysGlnHisSerGlu : 403 ||!:!|||!.!! !||| euArgGlnArgIleGlu 1713314 : TAAGGCAACGTATAGAG : 1713330 vulgar: AfOr95 0 403 . KQ414915.1 1710209 1713330 + 1183 M 62 186 5 0 2 I 0 464 3 0 2 M 84 252 S 0 1 5 0 2 I 0 115 3 0 2 S 1 2 M 34 102 5 0 2 I 0 542 3 0 2 M 46 138 G 0 3 M 67 201 5 0 2 I 0 138 3 0 2 M 92 276 5 0 2 I 0 630 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1710210 1713330 1183 + . gene_id 1 ; sequence AfOr95 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1710210 1710395 . + . KQ414915.1 exonerate:protein2genome:local exon 1710210 1710395 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1710396 1710397 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1710396 1710863 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1710862 1710863 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1710864 1711116 . + . KQ414915.1 exonerate:protein2genome:local exon 1710864 1711116 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711117 1711118 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711117 1711235 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1711234 1711235 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711236 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711236 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712227 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712228 1712229 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712228 1712369 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1712368 1712369 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1712370 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712370 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 5 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 5 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 4 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713330 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713330 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1710210 1713330 1183 + . alignment_id 1 ; Query AfOr95 ; Align 1710210 1 186 ; Align 1710864 63 252 ; Align 1711238 148 102 ; Align 1711886 182 138 ; Align 1712027 228 201 ; Align 1712370 295 276 ; Align 1713280 387 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr95 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 760 Query range: 4 -> 299 Target range: 1697524 -> 1699986 5 : AspPheSerIleAsnLeuSerSerIlePheIleLysLeuMetGlyIleTrpMetAl : 23 ||||||:!!:!: :!!!!!|||.!!!!.!!:|||:!!:!:|||:!!|||:!:|| AspPheAlaLeuLeuMetThrSerPheLeuMetLysIleValGlyLeuTrpLeuAl 1697525 : GATTTTGCTCTGTTAATGACGTCGTTTTTAATGAAGATCGTCGGTCTTTGGTTAGC : 1697579 24 : aAsnGlyArgSerGluLysCysValArgAsnValThrIleValTyrSerIleIleA : 42 |!!.! !!!!!.!|||:!! !! !|||... !|||:!::!!|||!!!:!::!!| aLysAspSerLysGluGluArgLysArgArgTyrThrLeuIleTyrThrValValA 1697580 : GAAAGACAGCAAGGAGGAACGCAAGCGTCGGTACACTTTGATCTATACGGTGGTCG : 1697636 43 : laLeuLeuPheGlyLeuTrpLeuGlnIleThrAspMetTyrTyrSerTrpGlyAsp : 60 ||:!!|||||||||:!!|||:!!|||.!!! !|||.!.|||||||||||| !:!! laIleLeuPheGlyValTrpValGlnPheArgAspPheTyrTyrSerTrpProAsn 1697637 : CGATTTTGTTTGGAGTGTGGGTGCAGTTCAGAGACTTCTATTACTCCTGGCCGAAT : 1697690 61 : PheSer >>>> Target Intron 1 >>>> GluCysIlePheSerMetCys : 69 |||.!! 849 bp :!:||| !!:!!!! ||| PheGly++ ++AspCysAlaTyrThrAlaCys 1697691 : TTTGGCgt.........................aggACTGTGCTTACACCGCTTGT : 1698566 70 : AsnMetLeuSerIleAlaAlaProLeuLeuLysLeuIleThrLeuIleValHisAr : 88 |||!!:|||!!!:!: ! ! !||||||||||||.!!..!:!!.!!:!!||||| AsnIleLeuCysLeuIleMetValLeuLeuLysLeuPheValValPheIleHisAr 1698567 : AACATTCTCTGCCTGATTATGGTACTGTTAAAGCTGTTCGTTGTATTCATACACAG : 1698623 89 : gLysAspPhePheTyrLeuIleLeuTyrLeuGlnArgLysPheLeuHisGlyAspT : 107 ||||!!:|||.!! ! |||::::::|||::: :::...||| ||| !:!!| gLysGluPheIleGluLeuLeuValTyrMetTyrLysAsnPheTrpHisLeuAsnT 1698624 : GAAAGAATTCATCGAACTgcttgtatatatgtacaaaaatttttggcACCTCAATT : 1698680 108 : yrAspAspTyrGluArgAsnIleValLeuAsnCysLysArgLysCysThrPhePhe : 125 ||||| ! !!|||! ! :!::!!! !:!!|||!:!|||! !!|||.!.! ! yrAspCysAsnGluLeuLeuLeuLeuGlnAspCysArgArgIleSerThrIleCys 1698681 : ACGATTGCAACGAACTACTACTGCTGCAAGACTGCAGAAGAATTAGCACTATATGT : 1698734 126 : ThrCysSerLeuThrPheThrThrLeuAlaThrValValSerTyrIleIleAsnPr : 144 ! ! ! !:!!!.!||| !.!!! !!.!|||:!!|||||||||:!::!!!..|| IleThrLeuIleAsnPheCysAlaGlnGlyThrIleValSerTyrValLeuThrPr 1698735 : ATCACGTTGATTAACTTCTGTGCTCAAGGCACAATTGTCAGCTACGTGCTAACACC : 1698791 145 : oLeuVal{A} >>>> Target Intron 2 >>>> {la}AsnIleGlyArgA : 152 |:!!:!!{|} 232 bp {||}||||||||||||| oIleIle{A}++ ++{la}AsnIleGlyArgA 1698792 : TATTATA{G}gt.........................ag{ca}aatattggaagaa : 1699047 153 : snGluSerAspArgAlaLeuProPheAsnIleTrpIleAspLeuProLeuThrIle : 170 ||...|||||||||!.!||||||||||||!!:|||:!!||||||||||||:!!:!: snSerSerAspArgValLeuProPheAsnMetTrpValAspLeuProLeuSerVal 1699048 : aCAGTTCCGATAGAGTGCTCCCATTCAACATGTGGGTTGATTTGCCGCTGTCTGTG : 1699101 171 : ThrProTyrTyrGluIleThrPheValLeuGlu >>>> Target Intron 3 : 182 :!!||| |||||||||..!|||||||||:!! 499 bp SerProThrTyrGluIleValPheValLeuGln++ 1699102 : TCACCAACGTACGAAATAGTGTTCGTGCTTCAGgt..................... : 1699139 183 : >>>> ValIleSerLeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPh : 198 |||:!:||||||||||||:!!||||||!!!|||.!!||||||||||||.! ++ValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLe 1699140 : ....agGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCT : 1699684 199 : eLeuCysIleMetAsnLeuHisValAlaGlyGlnPheGlnValLeuGlnHisArgI : 217 !||||||:!:||||||||||||!.!||| !||||||!:::!!||||||:!!|||: uLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgL 1699685 : TTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGT : 1699741 218 : leSerAsnIleThrAspLeuIleIleGluLysGluGluLysArgGluLysLeuIle : 235 !!||||||:!: !||| !! !! :!!:!!! !!!: ! !.!|||... ! ! euSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAla 1699742 : TATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCA : 1699795 236 : MetAspSerSerTyrPheAlaSerLysCysTyrAlaIlePheLysLysCysIleAr : 254 !||| !||||||..!!!.|||||| ! ||||||!!.|||:!!|| Ala---LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValAr 1699796 : GCT---CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACG : 1699849 255 : gGlnHisGlnAlaLeuIleAlaTyrCysArgLysLeuGluGluValPheAsnLeuI : 273 |||||||||| !! !|||.!!||||||!.!!:!|||.!.|||:!!|||!..:!!| gGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValI 1699850 : ACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCA : 1699906 274 : leValLeuGluGlnValLeuMetPheSerLeuLeuIleCysLeuAspGlyTyrLeu : 291 ||||||||! !!!.:!!|||:!:|||||||||||||||||||||! !|||!:!! ! leValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGln 1699907 : TTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAA : 1699960 292 : ValLeuMetAlaAspThrSerThr : 299 ||||||:!:! !:!!! !! !||| ValLeuValGluAsnIleIleThr 1699961 : GTGCTCGTAGAAAACATCATCACC : 1699986 vulgar: AfOr95 4 299 . KQ414915.1 1697524 1699986 + 760 M 58 174 5 0 2 I 0 845 3 0 2 M 84 252 S 0 1 5 0 2 I 0 228 3 0 2 S 1 2 M 34 102 5 0 2 I 0 495 3 0 2 M 55 165 G 1 0 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1697525 1699986 760 + . gene_id 2 ; sequence AfOr95 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1697525 1697698 . + . KQ414915.1 exonerate:protein2genome:local exon 1697525 1697698 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1697699 1697700 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1697699 1698547 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1698546 1698547 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1698548 1698800 . + . KQ414915.1 exonerate:protein2genome:local exon 1698548 1698800 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1698801 1698802 . + . intron_id 2 ; splice_site "Gt" KQ414915.1 exonerate:protein2genome:local intron 1698801 1699032 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1699031 1699032 . + . intron_id 1 ; splice_site "Ag" KQ414915.1 exonerate:protein2genome:local cds 1699033 1699136 . + . KQ414915.1 exonerate:protein2genome:local exon 1699033 1699136 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699137 1699138 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699137 1699635 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1699634 1699635 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699636 1699986 . + . KQ414915.1 exonerate:protein2genome:local exon 1699636 1699986 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1697525 1699986 760 + . alignment_id 2 ; Query AfOr95 ; Align 1697525 5 174 ; Align 1698548 63 252 ; Align 1699035 148 102 ; Align 1699636 182 165 ; Align 1699801 238 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr95 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 696 Query range: 147 -> 400 Target range: 1707001 -> 1709237 148 : AsnIleGlyArgAsnGluSerAspArgAlaLeuProPheAsnIleTrpIleAspLe : 166 !::||||||:::||||||||||||||| !||| ! !!|||.!!|||||||||!! SerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAspPh 1707002 : AgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGACTT : 1707056 167 : uProLeuThrIleThrProTyrTyrGluIleThrPheValLeuGlu >>>> Tar : 182 !||| !|||!!:|||||||||||||||||| !|||..!! !:!! eProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707057 : TCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt........ : 1707106 183 : get Intron 1 >>>> ValIleSerLeuTyrHisIleGlyValSerTyrPheC : 194 276 bp |||.!!! !:!! :!!:!! !!:!!||||||.!!| ++ValPheIleValMetTyrValCysIleSerTyrLeuC 1707107 : .................agGTTTTTATCGTAATGTACGTTTGCATAAGCTACCTTT : 1707416 195 : ysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGlnPheGlnVal : 212 ||.!!|||||||||||||||!!:!!:|||||||||..!||| !||||||!:!:!! ysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIle 1707417 : GTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATA : 1707470 213 : LeuGlnHisArgIleSerAsnIleThrAspLeuIleIleGluLysGluGluLysAr : 231 ||||||:!!|||:!:||||||:!: !! ! !.!.|||:::! LeuGlnTyrArgLeuSerAsnValCysGly------------AlaAsnGluArgSe 1707471 : TTGCAATACAGACTGTCGAATGTGTGCGGT------------GCAAACGAACGTAg : 1707515 232 : gGluLysLeuIleMetAspSerSerTyrPheAlaSerLysCysTyrAlaIlePheL : 250 :::|||::: ::: !!! ! !:!!..!:!!|||||||||! |||| rAspLysIleSerLysLysThrProSerAsnSerAspGluCysTyrAlaLysPheL 1707516 : cgataaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCA : 1707572 251 : ysLysCysIleArgGlnHisGlnAlaLeuIleAlaTyrCysArgLysLeuGluGlu : 268 ||!!.||||||!:!||||||||||||||||||! !||||||!.!:!!|||:!!||| ysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGlu 1707573 : AAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAG : 1707626 269 : ValPheAsnLeuIleValLeuGluGlnValLeuMetPheSerLeuLeuIleCysLe : 287 ||||||..!|||.!!||||||! !|||||||||:!:||||||||||||!!:||||| ValPheGlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLe 1707627 : GTGTTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCT : 1707683 288 : uAspGlyTyrLeuValLeuMet >>>> Target Intron 2 >>>> AlaAs : 296 |||||||||||||||| ||| 457 bp ! !|| uAspGlyTyrLeuVal---Met++ ++GluAs 1707684 : CGATGGATATTTGGTG---ATGgt.........................agGAAGA : 1708164 297 : pThrSerThrThrThrArgLeuIlePheGlyLeuHisIleThrValCysLeuCysG : 315 |||| !!! !! ! !||||||! !||| !!!!|||:!!|||! !|||||||||| pThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysG 1708165 : TACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCC : 1708221 316 : lnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSerSerSerIle : 333 ||||||||||||||||||||||||||||||||:!:||||||||||||! !!:!:!: lnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnVal 1708222 : AACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTG : 1708275 334 : AlaThrAlaAlaAsnArgGlyProTrpProMetIleProMetThrThrSerGlyAr : 352 |||!.!||| ! !! ! !! !!||| ! :!:|||||| !! !|||||||| AlaAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyAr 1708276 : GCCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCG : 1708332 353 : gMetMetLysLysAspLeuIleLeuValIleMetArgSerGlyThrProCysCysL : 371 ||||:!!::!|||||||||! !!!!|||||| |||||| !!..!|||||||||| gMetLeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysL 1708333 : AATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTC : 1708389 372 : euThrGlyArgGlyPhePheValValSerLeuGluThrTyrThrSer >>>> Ta : 387 |||||!.! !!||||||||| !|||||||||||||||||||||||| euThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708390 : TCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt....... : 1708439 388 : rget Intron 3 >>>> ValLeuSerThrAlaAlaSerTyrPheThrLeuLeu : 398 759 bp :!!||||||||||||||||||||||||||||||||| ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeu 1708440 : ..................agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTA : 1709229 399 : LysGln : 400 ::!:!! ArgLys 1709230 : CGAAAA : 1709237 vulgar: AfOr95 147 400 . KQ414915.1 1707001 1709237 + 696 M 34 102 5 0 2 I 0 272 3 0 2 M 41 123 G 4 0 M 66 198 G 1 0 M 1 3 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707002 1709237 696 + . gene_id 3 ; sequence AfOr95 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1707002 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707002 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 5 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709237 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709237 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1707002 1709237 696 + . alignment_id 3 ; Query AfOr95 ; Align 1707002 148 102 ; Align 1707380 182 123 ; Align 1707503 227 198 ; Align 1707701 294 3 ; Align 1708161 295 276 ; Align 1709196 387 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr95 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 652 Query range: 144 -> 400 Target range: 1694346 -> 1696254 145 : LeuValAlaAsnIleGlyArgAsnGluSerAspArgAlaLeuProPheAsnIleTr : 163 !!!:!!||||||:!!|||!:!|||:!!|||!!:||| !||||||||||||!!:|| PheLeuAlaAsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTr 1694347 : TTTTTAGCAAATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTG : 1694401 164 : pIleAspLeuProLeuThrIleThrProTyrTyrGluIleThrPheValLeuGlu : 182 |:!!|||!!!||| ! !:!::!!||||||||||||:!! !|||:!!:!!:!! pValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGln+ 1694402 : GGTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGg : 1694458 183 : >>>> Target Intron 1 >>>> ValIleSerLeuTyrHisIleGlyValS : 191 409 bp ..!:!!!!!:!!||||||:!!|||:!!! + ++ThrLeuCysValTyrHisValGlyIleC 1694459 : t.........................agACACTTTGCGTGTACCATGTCGGTATAT : 1694894 192 : erTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGln : 209 !!|||.!.||||||||||||.!!||| !!:!!:!!||||||||||||||| !||| ysTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGln 1694895 : GTTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAA : 1694948 210 : PheGlnValLeuGlnHisArgIleSerAsnIleThrAspLeuIleIleGluLysGl : 228 |||!:::!!||||||:!!|||.!!! !|||:!:!:!:!! :!!|||||||||:! PheArgIleLeuGlnTyrArgPheMetAsnLeuSerAsn---ValIleGluLysGl 1694949 : TTTCGTATCCTTCAATACCGATTCATGAATTTGAGTAAT---GTAATTGAGAAGCA : 1695002 229 : uGluLysArgGluLysLeuIleMetAspSerSerTyrPheAlaSerLysCysTyrA : 247 ! ! ! !!...:::||| ::: ! !!!! !!|||.!! ! ! !!||| nThrAspGlyArgGluLeuGluIleGlyTyrThrAsnPheThrValAspSerTyrL 1695003 : AACAGACGGTcgagaattggaaattggtTACACAAATTTCACAGTCGATAGTTACT : 1695059 248 : laIlePheLysLysCysIleArgGlnHisGlnAlaLeuIleAlaTyrCysArgLys : 265 ! !!!.|||!..|||:!:!:! ! ||||||||||||! !!.!||||||!:!||| euGlnLeuLysSerCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLys 1695060 : TACAATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAAAG : 1695113 266 : LeuGluGluValPheAsnLeuIleValLeuGluGlnValLeuMetPheSerLeuLe : 284 ||||||.!.:!!|||:::|||:!!||||||! !|||||||||.!..!.:!!:!!:! LeuGluAsnIlePheSerLeuLeuValLeuGlyGlnValLeuPheLeuAlaMetVa 1695114 : TTGGAGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGT : 1695170 285 : uIleCysLeuAspGlyTyrLeuValLeuMet >>>> Target Intron 2 >> : 295 !:!!||||||! ||||||! !:!!!!!:!! 415 bp lLeuCysLeuValGlyTyrGlnLeuPheLeu++ 1695171 : ACTTTGCCTCGTGGGATATCAGCTATTTCTGgt....................... : 1695205 296 : >> AlaAspThrSerThrThrThrArgLeuIlePheGlyLeuHisIleThrValC : 312 .!!|||:!! !! !!:!!! !!.!:!! !!!.! !|||:!!:!:.!!! ! ++ThrAspSerProProSerArgAsnValGlyLeuValLeuAsnLeuAlaGlyT 1695206 : ..agACAGACTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCA : 1695669 313 : ysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSer : 330 !||||||||||||!!!||||||||||||||||||||| !!:!:! !||||||||| hrLeuCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGluSer 1695670 : CTTTGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGC : 1695723 331 : SerSerIleAlaThrAlaAlaAsnArgGlyProTrpProMetIleProMetThrTh : 349 ! !..!:!!::!! !|||!.! ! ! !!|||||| !!! :!:|||||| !! MetAspValSerArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAspAr 1695724 : ATGGACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAG : 1695780 350 : rSerGlyArgMetMetLysLysAspLeuIleLeuValIleMetArgSerGlyThrP : 368 !!:!|||!:!! :!!::!:!!..!:!!:!!:!!|||||||||||||||..!! ! gAsnGlyLysSerValArgGlnSerMetLeuMetValIleMetArgSerAsnArgC 1695781 : AAATGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGT : 1695837 369 : roCysCysLeuThrGlyArgGlyPhePheValValSerLeuGluThrTyrThrSer : 386 !||||||||||||!.!!!!||||||||| !|||||||||||||||||||||.!! ysCysCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrGly 1695838 : GTTGCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGG : 1695891 387 : >>>> Target Intron 3 >>>> ValLeuSerThrAlaAlaSerTyrPhe : 395 319 bp ||||||||||||||| !||||||||| ++ ++ValLeuSerThrAlaMetSerTyrPhe 1695892 : gt.........................agGTCCTCAGCACTGCAATGTCATACTTT : 1696237 396 : ThrLeuLeuLysGln : 400 |||||||||!:!||| ThrLeuLeuArgGln 1696238 : ACACTACTGAGACAA : 1696254 vulgar: AfOr95 144 400 . KQ414915.1 1694346 1696254 + 652 M 37 111 5 0 2 I 0 405 3 0 2 M 41 123 G 1 0 M 71 213 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694347 1696254 652 + . gene_id 4 ; sequence AfOr95 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694347 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694347 1694457 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 2 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696254 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696254 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694347 1696254 652 + . alignment_id 4 ; Query AfOr95 ; Align 1694347 145 111 ; Align 1694867 182 123 ; Align 1694990 224 213 ; Align 1695618 295 276 ; Align 1696213 387 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr95 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 364 Query range: 240 -> 402 Target range: 1688490 -> 1690085 241 : PheAlaSerLysCysTyrAlaIlePheLysLysCysIleArgGlnHisGlnAlaLe : 259 !:!.!!!:!|||||||||.!!! .!.! ! ! ||||||!:!.!.||||||:!!|| TyrThrAsnLysCysTyrThrLysLeuIleAspCysIleLysAsnHisGlnSerLe 1688491 : TACACGAACAAATGTTACACCAAGCTGATAGATTGCATCAAAAATCATCAGTCGTT : 1688545 260 : uIleAlaTyrCysArgLysLeuGluGluValPheAsnLeuIleValLeuGluGlnV : 278 ||||! !!:!||| !|||||||||.!.|||!:!!..|||! !:!!|||! !!.: uIleGluPheCysValLysLeuGluAsnValTyrThrLeuThrIleLeuGlyHisI 1688546 : GATCGAGTTCTGCGTGAAACTCGAGAACGTGTACACGTTGACTATACTCGGCCACA : 1688602 279 : alLeuMetPheSerLeuLeuIleCysLeuAspGlyTyrLeuValLeuMet >>>> : 295 !!:!!:!:||||||||||||!!:|||!!!||| !||| !|||:!!:!! leValValPheSerLeuLeuMetCysPheAspThrTyrGluValValLeu++ 1688603 : TAGTGGTCTTCAGCTTGTTGATGTGCTTCGACACGTACGAGGTAGTTCTGgt.... : 1688655 296 : Target Intron 1 >>>> AlaAspThrSerThrThrThrArgLeuIlePhe : 305 816 bp ||| ! ..! !!||||||||||||||||||||| ++AlaLysValProThrThrThrArgLeuIlePhe 1688656 : .....................agGCAAAGGTACCTACCACGACGCGCCTCATATTC : 1689499 306 : GlyLeuHisIleThrValCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAs : 324 !!!!|||!!:! !! ! !!!!! !!..::::::...|||||||||||||||! LeuPheHisMetIleGlySerPheIleHisIleIlePhePheThrTyrSerCysGl 1689500 : TTATTCCACATGATCGGTAGCTTCATCCacataattttcttcacgtACAGTTGTGG : 1689556 325 : pCysIleIleArgGluSerSerSerIleAlaThrAlaAlaAsnArgGlyProTrpP : 343 ! !!:!:|||..!||||||! !..!||||||||||||.!! !! !||| !||| yGlyLeuIleGluGluSerMetAspIleAlaThrAlaThrTyrAlaGlyMetTrpT 1689557 : TGGTTTGATAGAAGAGAGTATGGATATTGCAACAGCAACGTATGCAGGAATGTGGA : 1689613 344 : roMetIleProMetThrThrSerGlyArgMetMetLysLysAspLeuIleLeuVal : 361 !!:!::!:||||||!.!! ! !|||!:!|||!!:::! !:!!:!!! |||:!! hrValLeuProMetAsnLysValGlyLysMetIleArgGlyAsnMetLysLeuMet 1689614 : CGGTTTTGCCAATGAATAAAGTTGGCAAAATGATACGAGGAAATATGAAGTTAATG : 1689667 362 : IleMetArgSerGlyThrProCysCysLeuThrGlyArgGlyPhePheValValSe : 380 ! !:!:|||||| ! !|||||||||:!!|||!.! !!||||||||| !||||| ThrValArgSerLeuGlnProCysCysIleThrAlaGlyGlyPhePheProValSe 1689668 : ACCGTAAGGTCGTTGCAACCGTGTTGCATAACTGCTGGTGGATTCTTTCCTGTCTC : 1689724 381 : rLeuGluThrTyrThrSer >>>> Target Intron 2 >>>> ValLeuSe : 389 ||||:!!||| !|||:!! 293 bp :!!:!!|| rLeuLysThrAlaThrAla++ ++LeuMetSe 1689725 : CTTGAAAACTGCTACCGCGgt.........................agCTAATGAG : 1690044 390 : rThrAlaAlaSerTyrPheThrLeuLeuLysGlnHisSer : 402 |:!!.!! !|||||||||||||||:!!!:!:!!...||| rSerThrMetSerTyrPheThrLeuMetArgGluArgSer 1690045 : TTCCACAATGTCGTATTTCACGCTCATGAGAGAGAGATCG : 1690085 vulgar: AfOr95 240 402 . KQ414915.1 1688490 1690085 + 364 M 54 162 5 0 2 I 0 812 3 0 2 M 92 276 5 0 2 I 0 289 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688491 1690085 364 + . gene_id 5 ; sequence AfOr95 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688491 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688491 1688652 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690085 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690085 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688491 1690085 364 + . alignment_id 5 ; Query AfOr95 ; Align 1688491 241 162 ; Align 1689469 295 276 ; Align 1690038 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr95 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 315 Query range: 180 -> 294 Target range: 1702013 -> 1702352 181 : GluValIleSerLeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPheLe : 199 :!!|||:!:||||||||||||:!!||||||!!!|||.!!||||||||||||.!!|| GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 200 : uCysIleMetAsnLeuHisValAlaGlyGlnPheGlnValLeuGlnHisArgIleS : 218 ||||:!:||||||||||||!.!||| !||||||!:::!!||||||:!!|||:!!| uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 219 : erAsnIleThrAspLeuIleIleGluLysGluGluLysArgGluLysLeuIleMet : 236 |||||:!: !||| !! !! :!!:!!! !!!: ! !.!|||... ! ! erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1702179 237 : AspSerSerTyrPheAlaSerLysCysTyrAlaIlePheLysLysCysIleArgGl : 255 !||| !||||||..!!!.|||||| ! ||||||!!.|||:!!||||| ---LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGl 1702180 : ---CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACA : 1702233 256 : nHisGlnAlaLeuIleAlaTyrCysArgLysLeuGluGluValPheAsnLeuIleV : 274 ||||||| !! !|||.!!||||||!.!!:!|||.!.|||:!!|||!..:!!|||| nHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleV 1702234 : ACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTG : 1702290 275 : alLeuGluGlnValLeuMetPheSerLeuLeuIleCysLeuAspGlyTyrLeuVal : 292 |||||! !!!.:!!|||:!:|||||||||||||||||||||! !|||!:!! !||| alLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnVal 1702291 : TACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTG : 1702344 293 : LeuMet : 294 |||:!! LeuVal 1702345 : CTCGTG : 1702352 vulgar: AfOr95 180 294 . KQ414915.1 1702013 1702352 + 315 M 56 168 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1702352 315 + . gene_id 6 ; sequence AfOr95 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702014 1702352 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702352 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1702352 315 + . alignment_id 6 ; Query AfOr95 ; Align 1702014 181 168 ; Align 1702182 238 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr95 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 243 Query range: 301 -> 393 Target range: 1702980 -> 1703256 302 : ArgLeuIlePheGlyLeuHisIleThrValCysLeuCysGlnLeuLeuMetPheTh : 320 ||||||! !|||! !!!!||||||..!! ! !!|||||||||||||||:!:||||| ArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLeuLeuPheTh 1702981 : CGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATTGCTATTTAC : 1703035 321 : rTyrSerCysAspCysIleIleArgGluSerSerSerIleAlaThrAlaAlaAsnA : 339 ||||||||||||| !!:!:|||..!||||||!!!!:!|||!.!|||||| ! !!! rTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaIleTyrL 1703036 : CTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGATATACC : 1703092 340 : rgGlyProTrpProMetIleProMetThrThrSerGlyArgMetMetLysLysAsp : 357 !||||||||| ! :!:|||||| !! !:!!||||||! !:!!!:!!:!||| euGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArgArgAsp 1703093 : TCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGAAGAGAC : 1703146 358 : LeuIleLeuValIleMetArgSerGlyThrProCysCysLeuThrGlyArgGlyPh : 376 |||! !:!!||||||:!:|||||| !!! ! !! !!|||||||||!.!!!!||||| LeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSerGlyPh 1703147 : TTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAGCGGATT : 1703203 377 : ePheValValSerLeuGluThrTyrThrSerValLeuSerThrAlaAlaSer : 393 |||| !|||||||||||||||! !|||!!!|||!!!!:! !:!! !||| ePheProValSerLeuGluThrCysThrThrValPheAsnPheSerPheSer 1703204 : CTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATTTCTCATTCTCT : 1703256 vulgar: AfOr95 301 393 . KQ414915.1 1702980 1703256 + 243 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702981 1703256 243 + . gene_id 7 ; sequence AfOr95 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702981 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1702981 1703256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702981 1703256 243 + . alignment_id 7 ; Query AfOr95 ; Align 1702981 302 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr95 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 213 Query range: 147 -> 229 Target range: 1681725 -> 1682094 148 : AsnIleGlyArgAsnGluSerAspArgAlaLeuProPheAsnIleTrpIle<->As : 165 |||||||||!:!!:!!!:..!!!:||| !||||||||| .!! ! :!: :! AsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAs 1681726 : AACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAA : 1681780 166 : pLeuProLeuThrIleThrProTyrTyrGluIleThrPheValLeuGlu >>>> : 182 !|||||| !:!!:!:|||||||||||||||||| ||||||:!!||| nLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681781 : CTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt..... : 1681833 183 : Target Intron 1 >>>> ValIleSerLeuTyrHisIleGlyValSerTyrP : 193 120 bp ..!:!!|||:!! ||| |||:!!!!!!:!! ++ThrLeuSerValValHisSerGlyIleCysPheC 1681834 : ....................agACATTATCTGTGGTGCATTCGGGAATTTGTTTCT : 1681984 194 : heCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGlnPheGln : 211 !||||||||||||||||||||||||:!!!:!:!!||||||!.!|||||||||:!! ysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLys 1681985 : GTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAG : 1682038 212 : ValLeuGlnHisArgIleSerAsnIleThrAspLeuIleIleGluLysGluGlu : 229 :!!||||||:!!!:!:!!..!!..:!! !..! !! ...||||||::: IleLeuGlnAsnLysLeuGlnThrValLeuSerGluLysSerSerLysGluLys 1682039 : ATTTTACAAAACAAACTCCAAACAGTATTGAGTGAGAAatcttcgaaagaaaaa : 1682094 vulgar: AfOr95 147 229 . KQ414915.1 1681725 1682094 + 213 M 17 51 G 0 3 M 17 51 5 0 2 I 0 116 3 0 2 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681726 1682094 213 + . gene_id 8 ; sequence AfOr95 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681726 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681726 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682094 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682094 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681726 1682094 213 + . alignment_id 8 ; Query AfOr95 ; Align 1681726 148 51 ; Align 1681780 165 51 ; Align 1681951 182 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr95 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 248 -> 388 Target range: 1677752 -> 1678746 249 : PheLysLysCysIleArgGlnHisGlnAlaLeuIleAlaTyrCysArgLysLeuGl : 267 |||:::||||||:!:|||!:!||| ! !||||||! !||| ..!:::|||.. PheGluLysCysLeuArgArgHisTyrLeuLeuIleAspTyrValGluGluLeuAs 1677753 : ttcgagaaatgcTTGCGTCGACACTATTTGCTCATTGACTACGTAGAGgaattgaa : 1677807 268 : uGluValPheAsnLeuIleValLeuGluGlnValLeuMetPheSerLeuLeuIleC : 286 ....:::|||!!.! !! !:!!||| !|||:!!:!!! ! ||||||||||||| nAsnLeuPheLysTyrThrLeuLeuLeuGlnMetMetThrSerSerLeuLeuIleC 1677808 : taatttgttCAAATACACCCTTCTGTTACAGATGATGACCTCGAGTTTGTTAATCT : 1677864 287 : ysLeuAspGlyTyrLeuValLeuMet >>>> Target Intron 1 >>>> A : 295 ||:!!..!|||||| ! !|||:!! 580 bp ysMetSerGlyTyrGluCysLeuVal++ ++T 1677865 : GTATGTCTGGTTACGAATGTTTAGTGgt.........................agT : 1678471 296 : laAspThrSerThrThrThrArgLeuIlePheGlyLeuHisIleThrValCysLeu : 313 !.!..!!||| ! !! !|||:!!:!!!:! !:!!:!!!!:..!!.!! :!! yrGlnAlaSerLeuLeuLysArgMetValTyrIleMetTyrMetValAlaSerVal 1678472 : ACCAGGCATCCTTGCTAAAACGCATGGTCTACATCATGTACATGGTTGCCTCAGTG : 1678525 314 : CysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSerSerSe : 332 ! :!!|||! !:!!.!...! !!! ||| :!:! !! !.!.|||!.!:! SerGluLeuTrpLeuIleValArgThrValAspGluLeuThrThrHisSerLysAl 1678526 : TCAGAATTATGGTTGATAGTCCGAACCGTAGACGAACTGACCACTCATAGCAAAGC : 1678582 333 : rIleAlaThrAlaAlaAsnArgGlyProTrpProMetIleProMetThrThrSerG : 351 !|||!.! !||| ! !! !..! !||| !:!:||| ... aIleGlyAspAlaMetTyrSerSerAspTrpGlyValIle---PheGlyLysLeuG 1678583 : GATCGGCGATGCGATGTATTCCTCGGATTGGGGAGTgatc---tttggaaaattgg : 1678636 352 : lyArgMetMetLysLysAspLeuIleLeuValIleMetArgSerGlyThrProCys : 369 ::: :::||| |||! !:!!:!!!!:|||||| ! ! !!||| luLysLysLeuLysPheAlaLeuThrThrMetValIleArgSerIleGluThrCys 1678637 : agaagaaattaaaatttgcctTGACGACGATGGTTATCAGATCGATCGAGACGTGT : 1678690 370 : CysLeuThrGlyArgGlyPhePheValValSerLeuGluThrTyrThrSerValLe : 388 ! !:!!! !!.! |||||||||!.!|||||| !||||||!:!|||||||||:! SerMetLysAla---GlyPhePheAlaValSerSerGluThrPheThrSerValIl 1678691 : TCTATGAAAGCT---GGCTTCTTTGCGGTCTCCAGTGAGACGTTTACATCGGTAAT : 1678744 389 : u : 388 ! e 1678745 : T : 1678746 vulgar: AfOr95 248 388 . KQ414915.1 1677752 1678746 + 147 M 46 138 5 0 2 I 0 576 3 0 2 M 51 153 G 1 0 M 27 81 G 1 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1677753 1678746 147 + . gene_id 9 ; sequence AfOr95 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1677753 1677890 . + . KQ414915.1 exonerate:protein2genome:local exon 1677753 1677890 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1677891 1677892 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1677891 1678470 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1678469 1678470 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1678471 1678746 . + . KQ414915.1 exonerate:protein2genome:local exon 1678471 1678746 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local similarity 1677753 1678746 147 + . alignment_id 9 ; Query AfOr95 ; Align 1677753 249 138 ; Align 1678471 295 153 ; Align 1678624 347 81 ; Align 1678705 375 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr95 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 146 -> 204 Target range: 1688053 -> 1689994 147 : AlaAsnIleGlyArgAsnGluSerAspArgAlaLeuProPheAsnIleTrpIleAs : 165 ||||||!!:.!!||||||:!!|||||||||!.!|||||||||!!.!!:|||:!!|| AlaAsnMetSerArgAsnLysSerAspArgValLeuProPheLysMetTrpValAs 1688054 : GCAAATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTGGGTCGA : 1688108 166 : pLeuProLeuThrIleThrProTyrTyrGluIleThrPheValLeuGluVal{Il} : 183 |! !||||||:!! !|||||||||||||||:!:! !|||..!!!!:!!|||{ } pTrpProLeuSerAspThrProTyrTyrGluLeuMetPheThrPheGlnVal{Se} 1688109 : TTGGCCGCTATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAGGTA{TC} : 1688162 184 : >>>> Target Intron 1 >>>> {e}SerLeuTyrHisIleGlyValSer : 191 1767 bp {!} ...::: ... ++ ++{r}PhePhePheAlaGluLeuArgLys 1688163 : gt.........................ag{t}ttttttttcgcggagctacgcaaa : 1689953 192 : TyrPheCysPheAspAsnPheLeuCysIleMetAsnLeu : 204 |||||| ... !..!||||||||||||:!:|||:!! TyrPhe***MetIleArgPheLeuCysIleLeuAsnVal 1689954 : tatttttgaatgatTCGCTTTTTGTGCATCCTTAACGTA : 1689994 vulgar: AfOr95 146 204 . KQ414915.1 1688053 1689994 + 130 M 36 108 S 0 2 5 0 2 I 0 1763 3 0 2 S 1 1 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688054 1689994 130 + . gene_id 10 ; sequence AfOr95 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688054 1688163 . + . KQ414915.1 exonerate:protein2genome:local exon 1688054 1688163 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688164 1688165 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688164 1689930 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1689929 1689930 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1689931 1689994 . + . KQ414915.1 exonerate:protein2genome:local exon 1689931 1689994 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688054 1689994 130 + . alignment_id 10 ; Query AfOr95 ; Align 1688054 147 108 ; Align 1689932 184 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr95 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 0 -> 60 Target range: 1692082 -> 1692262 1 : MetGluLysAspAspPheSerIleAsnLeuSerSerIlePheIleLysLeuMetGl : 19 :!!:!!!.. ! |||.!!|||||| !! !|||! !.!!!!.!!:|||:!!:!:|| ValGlnSerLysAspIleSerIleValTrpSerPhePheLeuMetLysIleValGl 1692083 : GTGCAGAGTAAAGATATCTCGATCGTTTGGTCGTTCTTTTTGATGAAAATCGTAGG : 1692137 20 : yIleTrpMetAlaAsnGlyArgSerGluLysCysValArgAsnValThrIleValT : 38 |:!:|||:!:||| !! !..!:!!|||:!! !! !|||||| !!.!!:!::!!| yLeuTrpLeuAlaAlaAspGluAlaGluGlnArgArgArgAsnPheAlaLeuIleT 1692138 : TCTGTGGCTAGCCGCCGACGAGGCTGAACAACGTCGGAGAAATTTCGCGCTGATTT : 1692194 39 : yrSerIleIleAlaLeuLeuPheGlyLeuTrpLeuGlnIleThrAspMetTyrTyr : 56 ||!!!:!:! !|||:!!!!!.!!!.!! !!! :!! !!!:! !|||!!:|||||| yrThrLeuAsnAlaIlePheIleAlaSerCysIleAlaMetArgAspIleTyrTyr 1692195 : ACACGCTGAACGCGATTTTTATCGCTTCGTGTATAGCAATGAGAGATATATACTAT : 1692248 57 : SerTrpGlyAsp : 60 |||||||||:!! SerTrpGlyAsn 1692249 : TCCTGGGGAAAC : 1692262 vulgar: AfOr95 0 60 . KQ414915.1 1692082 1692262 + 113 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1692083 1692262 113 + . gene_id 11 ; sequence AfOr95 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1692083 1692262 . + . KQ414915.1 exonerate:protein2genome:local exon 1692083 1692262 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1692083 1692262 113 + . alignment_id 11 ; Query AfOr95 ; Align 1692083 1 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 833 Query range: 149 -> 410 Target range: 1711237 -> 1713330 150 : AsnIleGlyLysAsnGluSerSerArgMetLeuProPheAsnMetTrpValAsnLe : 168 |||||||||!:!|||||||||..!|||!!:|||||||||!!.||||||:!!:!!:! AsnIleGlyArgAsnGluSerAspArgIleLeuProPheLysMetTrpIleAspIl 1711238 : AATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTGGATTGATAT : 1711292 169 : uProLeuAsnValThrProTyrPheGluIleThrTyrThrLeuGlnValLeuSerL : 187 !||| !::::!!|||||||||||||||||| :::||||||||||||! !!!!! eProThrSerMetThrProTyrPheGluIlePhePheThrLeuGlnValHisCysA 1711293 : ACCGACATCGATGACACcgtattttgaaatattcttcaccTTACAGGTACATTGTC : 1711349 188 : eu >>>> Target Intron 1 >>>> AlaLeuSerLeuTyrHisIleGlyV : 196 ! 534 bp !.!|||||| !|||!!.||||||| rg-+ ++ValLeuSerAlaTyrGlnIleGlyV 1711350 : GTtt.........................agGTTTTATCCGCGTATCAAATTGGCG : 1711910 197 : alSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGly : 214 |||||||| !|||||||||||| !!|||||||||||||||||||||:!!||| ! alSerTyrGlyCysPheAspAsnValLeuCysIleMetAsnLeuHisLeuAlaThr 1711911 : TGAGTTACGGTTGCTTCGACAACGTTCTATGCATCATGAACCTACACTTGGCCACT : 1711964 215 : GlnPheGlnValLeuGlnHisArgIleSerAsnIleIleAspSerMetAsnLysGl : 233 ||||||!:!:!!||||||||||||:!: !||||||! !! ! !! !!:!|||:! GlnPheArgIleLeuGlnHisArgLeuValAsnIleAsnGlyLeuLysSerLysGl 1711965 : CAGTTTCGAATACTGCAACATAGACTGGTGAATATAAACGGTCTGAAGAGCAAACA : 1712021 234 : uLysGluGluLysArgGluLysLeuThrValAspSerSerTyrLeuAlaSerLysC : 252 !! ! !|||||| !!|||! !! !! !:!!||||||!!! ! !!!|||..!!!.! nThrProGluLysGlyGluThrSerIleIleAspSerThrGluPheAlaAspAsnS 1712022 : GACACCGGAGAAAGGTGAAACGTCGATTATAGATTCGACAGAATTTGCGGATAACT : 1712078 253 : ysTyrAlaIlePheLysLysCysIleArgGlnHisGlnAlaLeuIleAlaTyrCys : 270 !|||! !:!!||||||!:!|||:!!||||||||||||:!!|||!!:|||!:!||| erTyrAspValPheLysArgCysValArgGlnHisGlnSerLeuMetAlaPheCys 1712079 : CTTACGACGTTTTCAAAAGATGCGTTCGTCAACATCAATCTCTGATGGCTTTCTgc : 1712132 271 : ArgLysLeuGluGlnValPheAsnLeuIleValLeuGluGlnValLeuMetPheSe : 289 ...|||||||||::::::|||!:!:!!|||:!!|||! !|||:!!|||:!!||||| GluLysLeuGluGluMetPheSerMetIleIleLeuGlyGlnLeuLeuValPheSe 1712133 : gagaaactcgaagaaatgTTCAGTATGATTATACTGGGGCAATTGTTAGTGTTCAG : 1712189 290 : rLeuLeuIleCysLeuAspGlyTyrGlnIleLeuLeu >>>> Target Intro : 302 |:!!!!!!!:|||||||||! !! !|||:!!|||||| 142 bp rIlePheMetCysLeuAspValCysGlnValLeuLeu++ 1712190 : TATTTTTATGTGTCTCGACGTGTGCCAAGTACTTCTGgt................. : 1712230 303 : n 2 >>>> AlaAsnGlyAspValLysThrArgLeuIlePheSerPheHisIleL : 317 !!..!!.!..!||| ! !!:!:::||||||:::||||||::! ++ProGlyAlaSerValGlyLysGlnMetIlePheThrPheHisLeuA 1712231 : ........agCCAGGTGCATCTGTGGGTAAACAGAtgattttcacgtttcacctAG : 1712415 318 : euGlyCysLeuCysGlnLeuLeuMetPheSerTyrSerCysAspCysIleIleArg : 335 !||||||:!!||||||||||||||||||!!!|||||||||||||||||||||! ! laGlyCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleThr 1712416 : CGGGATGTATGTGTCAATTGCTGATGTTTACGTACAGCTGCGATTGTATAATAACG : 1712469 336 : LysSerValAsnValAlaThrAlaAlaTyrGlyGlyProTrpProLeuLeuSerMe : 354 :!!|||:!!||||||.!! !|||!.!|||! !||||||||||||! !||| !!|| GluSerLeuAsnValThrGluAlaValTyrAspGlyProTrpProArgLeuProMe 1712470 : GAAAGTTTGAACGTGACGGAAGCGGTGTACGATGGACCATGGCCACGTTTGCCAAT : 1712526 355 : tThrThrSerGlyArgMetIleArgLysAspLeuIleLeuValIleMetArgSerS : 373 |!:!|||!!!||||||||||||||||||||||||||||||||||||!!:||||||! tSerThrArgGlyArgMetIleArgLysAspLeuIleLeuValIleIleArgSerA 1712527 : GAGCACGAGAGGAAGAATGATAAGGAAGGATTTGATACTCGTTATCATAAGATCGA : 1712583 374 : erValProCysCysLeuThrGlyLysGlyPhePheMetValSerLeuGluThrTyr : 391 !!||||||||||||||||||!.!!:!|||||||||:!::!!||||||||||||||| rgValProCysCysLeuThrAlaArgGlyPhePheValIleSerLeuGluThrTyr 1712584 : GAGTACCTTGTTGCTTGACCGCCAGAGGATTCTTCGTAATATCTTTGGAAACGTAT : 1712637 392 : ThrSer >>>> Target Intron 3 >>>> ValLeuSerThrAlaAlaSer : 400 |||!.! 634 bp |||:!!|||||||||!.!||| ThrLys++ ++ValIleSerThrAlaValSer 1712638 : ACGAAGgt.........................agGTTATAAGTACAGCAGTGTCG : 1713298 401 : TyrPheThrLeuLeuLysGlnArgAlaGlu : 410 |||||||||||||||!:!|||||| !||| TyrPheThrLeuLeuArgGlnArgIleGlu 1713299 : TACTTCACACTGTTAAGGCAACGTATAGAG : 1713330 vulgar: AfOr91_2 149 410 . KQ414915.1 1711237 1713330 + 833 M 38 114 5 0 2 I 0 530 3 0 2 M 114 342 5 0 2 I 0 138 3 0 2 M 92 276 5 0 2 I 0 630 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711238 1713330 833 + . gene_id 1 ; sequence AfOr91_2 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1711238 1711351 . + . KQ414915.1 exonerate:protein2genome:local exon 1711238 1711351 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711352 1711353 . + . intron_id 1 ; splice_site "TT" KQ414915.1 exonerate:protein2genome:local intron 1711352 1711885 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712227 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712228 1712229 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712228 1712369 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1712368 1712369 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1712370 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712370 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713330 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713330 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711238 1713330 833 + . alignment_id 1 ; Query AfOr91_2 ; Align 1711238 150 114 ; Align 1711886 188 342 ; Align 1712370 302 276 ; Align 1713280 394 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 729 Query range: 5 -> 303 Target range: 1697521 -> 1699977 6 : SerAspIleSerValAsnLeuThrSerIlePheMetLysIleIleGlyLeuTrpMe : 24 !.!|||.!!:!!:!! :!!||||||.!!!!.|||||||||:!!|||||||||:! LysAspPheAlaLeuLeuMetThrSerPheLeuMetLysIleValGlyLeuTrpLe 1697522 : AAAGATTTTGCTCTGTTAATGACGTCGTTTTTAATGAAGATCGTCGGTCTTTGGTT : 1697576 25 : tAlaThrAsnArgHisGluLysArgIleArgAsnIleThrIleIleTyrSerLeuI : 43 :|||! !:!!!!! ! |||:!!|||! |||... !|||:!:||||||!!!:!!: uAlaLysAspSerLysGluGluArgLysArgArgTyrThrLeuIleTyrThrValV 1697577 : AGCGAAAGACAGCAAGGAGGAACGCAAGCGTCGGTACACTTTGATCTATACGGTGG : 1697633 44 : leAlaIleLeuPheAlaLeuTrpIleGlnSerMetAsnIleTyrTyrSerTrpGly : 61 !!||||||||||||!.!:!!|||:!:|||! !! :!!.!!|||||||||||| ! alAlaIleLeuPheGlyValTrpValGlnPheArgAspPheTyrTyrSerTrpPro 1697634 : TCGCGATTTTGTTTGGAGTGTGGGTGCAGTTCAGAGACTTCTATTACTCCTGGCCG : 1697687 62 : AspPheSer >>>> Target Intron 1 >>>> AlaCysLeuPheSerThr : 70 :!!|||.!! 849 bp !||| !!:!!!!.!! AsnPheGly++ ++AspCysAlaTyrThrAla 1697688 : AATTTTGGCgt.........................aggACTGTGCTTACACCGCT : 1698563 71 : SerAsnIleLeuSerLeuThrMetProLeuLeuLysIlePheIleLeuLeuThrHi : 89 !!!|||||||||!!!|||! !||| !|||||||||:!:|||:!!:!!!!!! !|| CysAsnIleLeuCysLeuIleMetValLeuLeuLysLeuPheValValPheIleHi 1698564 : TGTAACATTCTCTGCCTGATTATGGTACTGTTAAAGCTGTTCGTTGTATTCATACA : 1698620 90 : sLysLysAspPhePheHisLeuIleSerTyrMetGlnArgAsnPheLeuHisGlyA : 108 |!:!|||!!:|||.!!.!.|||::: |||||| :::|||||| ||| !| sArgLysGluPheIleGluLeuLeuValTyrMetTyrLysAsnPheTrpHisLeuA 1698621 : CAGGAAAGAATTCATCGAACTgcttgtatatatgtacaaaaatttttggcACCTCA : 1698677 109 : snTyrAspAspTyrGluArgGluValValPheGlyCysLysArgLysCysThrPhe : 126 |||||||| ! !!|||! ! !:!!:!! ! !|||!:!|||! !!|||.!. snTyrAspCysAsnGluLeuLeuLeuLeuGlnAspCysArgArgIleSerThrIle 1698678 : ATTACGATTGCAACGAACTACTACTGCTGCAAGACTGCAGAAGAATTAGCACTATA : 1698731 127 : PheIleCysPhePheThrPheLeuThrMetAlaThrValAlaSerTyrIlePheSe : 145 ! !||| !!..!!!.!|||! !.!!...!.!|||:!!!.!||||||:!:.!.!! CysIleThrLeuIleAsnPheCysAlaGlnGlyThrIleValSerTyrValLeuTh 1698732 : TGTATCACGTTGATTAACTTCTGTGCTCAAGGCACAATTGTCAGCTACGTGCTAAC : 1698788 146 : rProLeuIle{G} >>>> Target Intron 2 >>>> {lu}AsnIleGlyL : 153 !|||:!!|||{!} 232 bp { !}|||||||||: rProIleIle{A}++ ++{la}AsnIleGlyA 1698789 : ACCTATTATA{G}gt.........................ag{ca}aatattggaa : 1699044 154 : ysAsnGluSerSerArgMetLeuProPheAsnMetTrpValAsnLeuProLeuAsn : 171 ::|||...|||..!|||:!!|||||||||||||||||||||:!!|||||||||::! rgAsnSerSerAspArgValLeuProPheAsnMetTrpValAspLeuProLeuSer 1699045 : gaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTGGGTTGATTTGCCGCTGTCT : 1699098 172 : ValThrProTyrPheGluIleThrTyrThrLeuGln >>>> Target Intron : 184 |||:!!||| !:!||||||..!!:!..!|||||| 482 bp ValSerProThrTyrGluIleValPheValLeuGln++ 1699099 : GTGTCACCAACGTACGAAATAGTGTTCGTGCTTCAGgt.................. : 1699139 185 : 3 >>>> ValLeuSerLeu-----AlaLeuSerLeuTyrHisIleGlyValSer : 197 :!!|||!!!|||#####!.!|||||||||||||||:!!||||||!!! ++IleLeuCysLeu#####ValLeuSerLeuTyrHisValGlyValCys 1699140 : .......agATTTTGTGTTTGCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGT : 1699663 198 : TyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGlnPh : 216 |||.!!||||||||||||.!!||||||:!:||||||||||||!.!||| !||||| TyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPh 1699664 : TACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATT : 1699720 217 : eGlnValLeuGlnHisArgIleSerAsnIleIleAspSerMetAsnLysGluLysG : 235 |!:::!!||||||:!!|||:!!||||||:!: !|||!!!! !..|||:!! !! eArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValA 1699721 : TCGTATACTGCAATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAG : 1699777 236 : luGluLysArgGluLysLeuThrValAspSerSerTyrLeuAlaSerLysCysTyr : 253 !:!!:!!...!...!.. !.!!:!! ||| !!!!|||..!!!.|||||| spAspAsnGluSerSerAlaAlaLeu------SerArgPheAlaGluAsnCysTyr 1699778 : ATGACAATGAATCCAGCGCAGCTCTG------TCTCGTTTCGCGGAGAACTGTTAT : 1699825 254 : AlaIlePheLysLysCysIleArgGlnHisGlnAlaLeuIleAlaTyrCysArgLy : 272 ! ||||||!!.|||:!!|||||||||||| !! !|||.!!||||||!.!!: LysAlaPheLysAsnCysValArgGlnHisGlnAsnHisIleThrTyrCysHisAr 1699826 : AAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCATATCACGTACTGTCACAG : 1699882 273 : sLeuGluGlnValPheAsnLeuIleValLeuGluGlnValLeuMetPheSerLeuL : 291 !|||.!.:!!:!!|||!..:!!|||||||||! !!!.:!!|||:!:|||||||||| gLeuAsnGluIlePheThrValIleValLeuGlyHisIleLeuValPheSerLeuL 1699883 : ATTGAACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGCCTTC : 1699939 292 : euIleCysLeuAspGlyTyrGlnIleLeuLeuAlaAsn : 303 |||||||||||! !|||!:!|||:!:|||:!!! !||| euIleCysLeuValGlyPheGlnValLeuValGluAsn 1699940 : TGATATGTCTGGTTGGATTCCAAGTGCTCGTAGAAAAC : 1699977 vulgar: AfOr91_2 5 303 . KQ414915.1 1697521 1699977 + 729 M 59 177 5 0 2 I 0 845 3 0 2 M 84 252 S 0 1 5 0 2 I 0 228 3 0 2 S 1 2 M 34 102 5 0 2 I 0 478 3 0 2 M 4 12 F 0 5 M 56 168 G 2 0 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1697522 1699977 729 + . gene_id 2 ; sequence AfOr91_2 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1697522 1697698 . + . KQ414915.1 exonerate:protein2genome:local exon 1697522 1697698 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1697699 1697700 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1697699 1698547 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1698546 1698547 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1698548 1698800 . + . KQ414915.1 exonerate:protein2genome:local exon 1698548 1698800 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1698801 1698802 . + . intron_id 2 ; splice_site "Gt" KQ414915.1 exonerate:protein2genome:local intron 1698801 1699032 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1699031 1699032 . + . intron_id 1 ; splice_site "Ag" KQ414915.1 exonerate:protein2genome:local cds 1699033 1699136 . + . KQ414915.1 exonerate:protein2genome:local exon 1699033 1699136 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699137 1699138 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699137 1699618 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1699617 1699618 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699619 1699977 . + . KQ414915.1 exonerate:protein2genome:local exon 1699619 1699977 . + . insertions 0 ; deletions 2 ; frameshifts 5 KQ414915.1 exonerate:protein2genome:local similarity 1697522 1699977 729 + . alignment_id 2 ; Query AfOr91_2 ; Align 1697522 6 177 ; Align 1698548 65 252 ; Align 1699035 150 102 ; Align 1699619 184 12 ; Align 1699636 188 168 ; Align 1699804 246 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 669 Query range: 148 -> 412 Target range: 1706998 -> 1709255 149 : GluAsnIleGlyLysAsnGluSerSerArgMetLeuProPheAsnMetTrpValAs : 167 |||!::||||||||||||||||||..!|||!!:||| ! !!|||.!.|||:!!:! GluSerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAs 1706999 : GAAAgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGA : 1707053 168 : nLeuProLeuAsnValThrProTyrPheGluIleThrTyrThrLeuGln >>>> : 184 !!!!||| !!.!:!!|||||||||!:!|||||| !!:!|||! !||| pPheProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707054 : CTTTCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt..... : 1707106 185 : Target Intron 1 >>>> ValLeuSerLeuAlaLeuSerLeuTyrHisIleG : 195 264 bp :!!! ! !! !!.!!!!! !:!! :!!:!! -+LeuSerLeuGlnValPheIleValMetTyrValC 1707107 : ....................tgTTATCGCTACAGGTTTTTATCGTAATGTACGTTT : 1707401 196 : lyValSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAla : 213 !!:!!||||||.!!|||.!!|||||||||||||||!!:!!:|||||||||..!||| ysIleSerTyrLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAla 1707402 : GCATAAGCTACCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCT : 1707455 214 : GlyGlnPheGlnValLeuGlnHisArgIleSerAsnIleIleAspSerMetAsnLy : 232 !||||||!:!:!!||||||:!!|||:!:||||||:!: !! !:!! !! ThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnValCysGlyAla------As 1707456 : ACTCAATTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGTGCA------AA : 1707506 233 : sGluLysGluGluLysArgGluLysLeuThrValAspSerSerTyrLeuAlaSerL : 251 .|||:::...:::||| ...||| ||| !..!!:!||| ..!: nGluArgSerAspLysIleSerLysLysThrProSerAsnSer---------AspG 1707507 : CGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTCG---------GACG : 1707554 252 : ysCysTyrAlaIlePheLysLysCysIleArgGlnHisGlnAlaLeuIleAlaTyr : 269 !!|||||||||! ||||||!!.||||||!:!||||||||||||||||||! !||| luCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyr 1707555 : AATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATAC : 1707608 270 : CysArgLysLeuGluGlnValPheAsnLeuIleValLeuGluGlnValLeuMetPh : 288 |||!.!:!!|||:!!:!!||||||..!|||.!!||||||! !|||||||||:!:|| CysAsnGluLeuGlnGluValPheGlyLeuPheValLeuAlaGlnValLeuLeuPh 1707609 : TGTAACGAACTTCAAGAGGTGTTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTT : 1707665 289 : eSerLeuLeuIleCysLeuAspGlyTyrGlnIleLeuLeu >>>> Target In : 302 ||||||||||!!:||||||||||||||| :!::!!:!! 457 eSerLeuLeuMetCysLeuAspGlyTyr---LeuValMet++ 1707666 : CAGTTTGTTAATGTGCCTCGATGGATAT---TTGGTGATGgt.............. : 1707706 303 : tron 2 >>>> AlaAsnGlyAspValLysThrArgLeuIlePheSerPheHisI : 316 bp ! !:!! ! !:!!! ! !||||||! !|||! !||||||: ++GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisL 1707707 : ...........agGAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACC : 1708203 317 : leLeuGlyCysLeuCysGlnLeuLeuMetPheSerTyrSerCysAspCysIleIle : 334 !! !|||||||||||||||||||||||||||!!!|||||||||||||||:!:||| euThrGlyCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIle 1708204 : TAACGGGATGCCTGTGCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATA : 1708257 335 : ArgLysSerValAsnValAlaThrAlaAlaTyrGlyGlyProTrpProLeuLeuSe : 353 |||:!!|||:!!|||||||||!.!||| !|||! ! !! !!||| !! !||| ! ArgGluSerLeuAsnValAlaAsnAlaIleTyrAspCysSerTrpIleHisLeuPr 1708258 : CGAGAAAGCTTGAACGTGGCCAATGCTATATACGACTGCTCGTGGATTCACTTGCC : 1708314 354 : rMetThrThrSerGlyArgMetIleArgLysAspLeuIleLeuValIleMetArgS : 372 !||| !! !||||||||||||:!:||||||||||||! !!!!|||||| |||| oMetAspArgSerGlyArgMetLeuArgLysAspLeuThrPheValIleGlyArgS 1708315 : AATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGAT : 1708371 373 : erSerValProCysCysLeuThrGlyLysGlyPhePheMetValSerLeuGluThr : 390 ||!!!||||||||||||||||||!.! ||||||||| ||||||||||||||| erArgValProCysCysLeuThrAlaCysGlyPhePheProValSerLeuGluThr 1708372 : CTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACG : 1708425 391 : TyrThrSer >>>> Target Intron 3 >>>> ValLeuSerThrAlaAla : 399 ||||||||| 759 bp :!!||||||||||||||| TyrThrSer++ ++IleLeuSerThrAlaAla 1708426 : TACACTTCGgt.........................agATTTTAAGTACCGCAGCG : 1709211 400 : SerTyrPheThrLeuLeu<->LysGlnArgAlaGluValIle : 412 |||||||||||||||||| ||||||..!||||||:!!:!! SerTyrPheThrLeuLeuArgLysGlnGluAlaGluIleVal 1709212 : TCATACTTCACACTGCTACGAAAACAAGAAGCAGAAATAGTT : 1709255 vulgar: AfOr91_2 148 412 . KQ414915.1 1706998 1709255 + 669 M 35 105 5 0 2 I 0 260 3 0 2 M 46 138 G 2 0 M 15 45 G 3 0 M 48 144 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 12 36 G 0 3 M 7 21 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1706999 1709255 669 + . gene_id 3 ; sequence AfOr91_2 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1706999 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1706999 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707367 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707366 1707367 . + . intron_id 0 ; splice_site "TG" KQ414915.1 exonerate:protein2genome:local cds 1707368 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707368 1707703 . + . insertions 0 ; deletions 6 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709255 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709255 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1706999 1709255 669 + . alignment_id 3 ; Query AfOr91_2 ; Align 1706999 149 105 ; Align 1707368 184 138 ; Align 1707506 232 45 ; Align 1707551 250 144 ; Align 1707695 299 9 ; Align 1708161 302 276 ; Align 1709196 394 36 ; Align 1709235 406 21 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 608 Query range: 146 -> 407 Target range: 1694346 -> 1696254 147 : LeuIleGluAsnIleGlyLysAsnGluSerSerArgMetLeuProPheAsnMetTr : 165 !!!:!!! !|||:!!|||||||||:!!|||..!||||||||||||||||||||||| PheLeuAlaAsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTr 1694347 : TTTTTAGCAAATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTG : 1694401 166 : pValAsnLeuProLeuAsnValThrProTyrPheGluIleThrTyrThrLeuGln : 184 ||||:!!!!!||| !...:!!:!!||||||!:!|||:!! !!:!! !:!!||| pValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGln+ 1694402 : GGTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGg : 1694458 185 : >>>> Target Intron 1 >>>> ValLeuSerLeuAlaLeuSerLeuTyrH : 193 397 bp :!!!!! !! !.!!|||!!!:!!|||| + +-LeuPheLeuGlnThrLeuCysValTyrH 1694459 : t.........................acCTATTTCTGCAGACACTTTGCGTGTACC : 1694882 194 : isIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHis : 211 ||:!!|||:!!!!!|||.!.||||||||||||.!!||| !!:!!:!!||||||||| isValGlyIleCysTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHis 1694883 : ATGTCGGTATATGTTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCAC : 1694936 212 : ValAlaGlyGlnPheGlnValLeuGlnHisArgIleSerAsnIleIleAspSerMe : 230 |||||| !||||||!:::!!||||||:!!|||.!!! !|||:!:! !:!! !!! ValAlaThrGlnPheArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIl 1694937 : GTGGCCACTCAATTTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAAT : 1694993 231 : tAsnLysGluLysGluGluLysArgGluLysLeuThrValAspSerSerTyrLeuA : 249 : ||||||:!! ! ! !!...:::||| ::: ! !!!! !!!!!. e------GluLysGlnThrAspGlyArgGluLeuGluIleGlyTyrThrAsnPheT 1694994 : T------GAGAAGCAAACAGACGGTcgagaattggaaattggtTACACAAATTTCA : 1695044 250 : laSerLysCysTyrAlaIlePheLysLysCysIleArgGlnHisGlnAlaLeuIle : 267 !! ! ! !!||| ! !!!.|||!..|||:!:!:! ! ||||||||||||! ! hrValAspSerTyrLeuGlnLeuLysSerCysValGlnTyrHisGlnAlaLeuThr 1695045 : CAGTCGATAGTTACTTACAATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACA : 1695098 268 : AlaTyrCysArgLysLeuGluGlnValPheAsnLeuIleValLeuGluGlnValLe : 286 !.!||||||!:!|||||||||.!.:!!|||:::|||:!!||||||! !|||||||| GlyTyrCysLysLysLeuGluAsnIlePheSerLeuLeuValLeuGlyGlnValLe 1695099 : GGCTATTGCAAAAAGTTGGAGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGCT : 1695155 287 : uMetPheSerLeuLeuIleCysLeuAspGlyTyrGlnIleLeuLeu >>>> Tar : 302 |.!..!.:!!:!!:!!:!!||||||! |||||||||:!!!!!||| uPheLeuAlaMetValLeuCysLeuValGlyTyrGlnLeuPheLeu++ 1695156 : TTTCCTAGCCATGGTACTTTGCCTCGTGGGATATCAGCTATTTCTGgt........ : 1695205 303 : get Intron 2 >>>> AlaAsnGlyAspValLysThrArgLeuIlePheSerP : 314 415 bp .!!:!!..! !..!! !!.!:!! !!!. !. ++ThrAspSerProProSerArgAsnValGlyLeuValL 1695206 : .................agACAGACTCACCACCTTCGAGAAACGTCGGATTGGTAC : 1695654 315 : heHisIleLeuGlyCysLeuCysGlnLeuLeuMetPheSerTyrSerCysAspCys : 332 !!:!!:!: !||| !||||||||||||!!!||||||!!!|||||||||||| !! euAsnLeuAlaGlyThrLeuCysGlnLeuPheMetPheThrTyrSerCysAspGly 1695655 : TCAACCTGGCAGGCACTTTGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGT : 1695708 333 : IleIleArgLysSerValAsnValAlaThrAlaAlaTyrGlyGlyProTrpProLe : 351 :!:! !|||:!!|||:!!:!!|||::!! !|||!.!!:!!.! !!|||||| !! LeuThrArgGluSerMetAspValSerArgAlaValPheAlaArgProTrpAlaAs 1695709 : TTGACAAGAGAGAGCATGGACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAA : 1695765 352 : uLeuSerMetThrThrSerGlyArgMetIleArgLysAspLeuIleLeuValIleM : 370 !||| !!||| !! !!:!|||!:!! :!:|||:!!..!:!!:!!:!!||||||| nLeuProMetAspArgAsnGlyLysSerValArgGlnSerMetLeuMetValIleM 1695766 : TCTGCCAATGGATAGAAATGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCA : 1695822 371 : etArgSerSerValProCysCysLeuThrGlyLysGlyPhePheMetValSerLeu : 388 ||||||||!:! ! !||||||||||||!.!!..||||||||| ||||||||| etArgSerAsnArgCysCysCysLeuThrAlaSerGlyPhePheProValSerLeu 1695823 : TGAGGTCGAACAGGTGTTGCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTC : 1695876 389 : GluThrTyrThrSer >>>> Target Intron 3 >>>> ValLeuSerThr : 397 ||||||||||||.!! 319 bp |||||||||||| GluThrTyrThrGly++ ++ValLeuSerThr 1695877 : GAGACTTACACTGGGgt.........................agGTCCTCAGCACT : 1696222 398 : AlaAlaSerTyrPheThrLeuLeuLysGln : 407 ||| !||||||||||||||||||!:!||| AlaMetSerTyrPheThrLeuLeuArgGln 1696223 : GCAATGTCATACTTTACACTACTGAGACAA : 1696254 vulgar: AfOr91_2 146 407 . KQ414915.1 1694346 1696254 + 608 M 37 111 5 0 2 I 0 393 3 0 2 M 47 141 G 2 0 M 69 207 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694347 1696254 608 + . gene_id 4 ; sequence AfOr91_2 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694347 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694347 1694457 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694854 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694853 1694854 . + . intron_id 0 ; splice_site "AC" KQ414915.1 exonerate:protein2genome:local cds 1694855 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694855 1695202 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 2 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696254 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696254 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694347 1696254 608 + . alignment_id 4 ; Query AfOr91_2 ; Align 1694347 147 111 ; Align 1694855 184 141 ; Align 1694996 233 207 ; Align 1695618 302 276 ; Align 1696213 394 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 513 Query range: 183 -> 400 Target range: 1702004 -> 1703256 184 : ValLeuSerLeuAlaLeuSerLeuTyrHisIleGlyValSerTyrPheCysPheAs : 202 |||!!!:!!! !!.!|||||||||||||||:!!||||||!!!|||.!!|||||||| ValPheAlaGlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAs 1702005 : GTGTTTGCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGA : 1702059 203 : pAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGlnPheGlnValLeuGlnH : 221 ||||.!!||||||:!:||||||||||||!.!||| !||||||!:::!!||||||: pAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnT 1702060 : CAACCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAAT : 1702116 222 : isArgIleSerAsnIleIleAspSerMetAsnLysGluLysGluGluLysArgGlu : 239 !!|||:!!||||||:!: !|||!!!! !..|||:!! !!!:!!:!!...!... yrArgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSer 1702117 : ACAGGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCC : 1702170 240 : LysLeuThrValAspSerSerTyrLeuAlaSerLysCysTyrAlaIlePheLysLy : 258 !.. !.!!:!! ||| !!!!|||..!!!.|||||| ! ||||||!! SerAlaAlaLeu------SerArgPheAlaGluAsnCysTyrLysAlaPheLysAs 1702171 : AGCGCAGCTCTG------TCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAA : 1702221 259 : sCysIleArgGlnHisGlnAlaLeuIleAlaTyrCysArgLysLeuGluGlnValP : 277 .|||:!!|||||||||||| !! !|||.!!||||||!.!!:!|||.!.:!!:!!| nCysValArgGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIleP 1702222 : TTGCGTACGACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATAT : 1702278 278 : heAsnLeuIleValLeuGluGlnValLeuMetPheSerLeuLeuIleCysLeuAsp : 295 ||!..:!!|||||||||! !!!.:!!|||:!:|||||||||||||||||||||! ! heThrValIleValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuVal 1702279 : TCACGGTCATTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTT : 1702332 296 : GlyTyrGlnIleLeuLeuAlaAsnGlyAspValLysThrArgLeuIlePheSer{P : 314 |||!:!|||:!:|||:!!!.!..! !! !! ! ::: ||| {. GlyPheGlnValLeuValValArgPheValGluProLeuIleIleLysPheHis{I 1702333 : GGATTCCAAGTGCTCGTGGTACGTTTCGTTGAACCTttgattattaaatttcat{a : 1702389 315 : } >>>> Target Intron 1 >>>> {he}HisIleLeuGlyCysLeuCysG : 322 } 607 bp {!!}||||||:!!||| !!||||||| }++ +-{le}HisIleValGlySerLeuCysG 1702390 : }gt.........................at{TT}CACATAGTCGGTAGTCTATGCC : 1703020 323 : lnLeuLeuMetPheSerTyrSerCysAspCysIleIleArgLysSerValAsnVal : 340 ||||||||:!:|||!!!|||||||||||| !!:!:|||..!:!!|||..!|||:!! lnLeuLeuLeuPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIle 1703021 : AACTATTGCTATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATC : 1703074 341 : AlaThrAlaAlaTyrGlyGlyProTrpProLeuLeuSerMetThrThrSerGlyAr : 359 !.!|||||| !||| !||||||||| !! !||| !!||| !! !:!!||||| GlyThrAlaIleTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyAr 1703075 : GGGACTGCGATATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAG : 1703131 360 : gMetIleArgLysAspLeuIleLeuValIleMetArgSerSerValProCysCysL : 378 |! !:!:|||!:!||||||! !:!!||||||:!:||||||!!! ! !! !!|||| gArgLeuArgArgAspLeuThrMetValIleValArgSerArgLysSerSerCysL 1703132 : AAGGTTGAGAAGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTT : 1703188 379 : euThrGlyLysGlyPhePheMetValSerLeuGluThrTyrThrSerValLeuSer : 396 |||||!.!!..||||||||| |||||||||||||||! !|||!!!|||!!!!:! euThrAlaSerGlyPhePheProValSerLeuGluThrCysThrThrValPheAsn 1703189 : TAACTGCCAGCGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAAT : 1703242 397 : ThrAlaAlaSer : 400 !:!! !||| PheSerPheSer 1703243 : TTCTCATTCTCT : 1703256 vulgar: AfOr91_2 183 400 . KQ414915.1 1702004 1703256 + 513 M 60 180 G 2 0 M 68 204 S 0 1 5 0 2 I 0 603 3 0 2 S 1 2 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702005 1703256 513 + . gene_id 5 ; sequence AfOr91_2 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702005 1702389 . + . KQ414915.1 exonerate:protein2genome:local exon 1702005 1702389 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local splice5 1702390 1702391 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1702390 1702996 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702995 1702996 . + . intron_id 0 ; splice_site "AT" KQ414915.1 exonerate:protein2genome:local cds 1702997 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1702997 1703256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702005 1703256 513 + . alignment_id 5 ; Query AfOr91_2 ; Align 1702005 184 180 ; Align 1702185 246 204 ; Align 1702999 315 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 252 Query range: 6 -> 147 Target range: 1685772 -> 1687626 7 : AspIleSerValAsnLeuThrSerIlePheMetLysIleIleGlyLeuTrpMetAl : 25 |||||||||:!!!!. ......:::|||:::::!||||||||||||:! AspIleSerLeuLysCysGlyIlePheLeuLeuLysLeuValGlyLeuTrpMetSe 1685773 : GATATTTCCCTCAAgtgtggaatttttcttttgaaattagtCGGCCTCTGGATGTC : 1685827 26 : aThrAsnArgHisGluLysArgIleArgAsnIleThrIleIleTyrSerLeuIleA : 44 !! !|||!!! !|||:!!||| !|||!...!!|||:!:.!! |||:!!.!!| rMetAsnSerValGluGluArgArgArgArgPheThrLeuPheGlySerValPheA 1685828 : CATGAACAGCGTCGAGGAGCGTCGAAGGAGGTTCACGTTGTTCGGATCAGTTTTCG : 1685884 45 : laIleLeuPheAlaLeuTrpIleGlnSerMetAsnIleTyrTyrSerTrpGlyAsp : 62 ||:!!! !!:!!.!:!!!:::!:.!. !! :!!||| !:!!|||!::! !||| laLeuSerTyrGlyValTyrValAsnValAsnAspIleLeuHisSerPheAspAsp 1685885 : CCCTTTCTTACGGCGTTTACGTGAACGTAAACGATATTCTTCACAGCTTCGATGAT : 1685938 63 : PheSer >>>> Target Intron 1 >>>> AlaCysLeuPheSerThrSer : 71 .!.||| 1431 bp !|||:!!||| !|||!!! LeuSer++ ++HisCysIlePheLeuThrCys 1685939 : CTGAGCgt.........................agcATTGCATCTTTCTGACTTGC : 1687396 72 : AsnIleLeuSerLeuThrMetProLeuLeuLysIlePheIleLeuLeuThrHisLy : 90 |||! !|||!!!:!! !:!! !!:!!!!!||||||||||||||| !!.!|||!: AsnThrLeuCysIleLeuLeuAlaIlePheLysIlePheIleLeuSerAsnHisAr 1687397 : AACACACTGTGCATTCTTCTGGCGATATTTAAGATTTTCATACTAAGCAATCACAG : 1687453 91 : sLysAspPhePheHisLeuIleSerTyrMetGlnArgAsnPheLeuHisGlyAsnT : 109 !! !!!:||| .!.:!!:!!! !||| !|||!:!:!!|||! !|||! !|||| gThrGluPheLysGluIleValLeuTyrAlaGlnLysHisPheTrpHisAspAsnT 1687454 : AACGGAATTCAAGGAGATAGTCTTGTACGCGCAGAAGCATTTTTGGCATGATAATT : 1687510 110 : yrAspAspTyrGluArgGluValValPheGlyCysLysArgLysCysThrPhePhe : 127 ||..! ! ! ||||||! !:!! ! ! !|||:!!||| |||! !.!.!:: yrSerLysGluGluArgValLeuTyrGlyAspCysGlnArgPheCysLysLeuTrp 1687511 : ACAGCAAAGAGGAGAGGGTGCTTTATGGAGATTGCCAGAGGTTCTGCAAACTATGG : 1687564 128 : IleCysPhePheThrPheLeuThrMetAlaThrValAlaSerTyrIlePheSerPr : 146 :!! .!..!. !|||||||||...|||:!!:!!!.!! !|||.!! !!!!!|| ValIleLeuIleCysPheLeuThrGlnAlaSerLeuValPheTyrPheValThrPr 1687565 : GTCATACTAATATGTTTCCTTACGCAAGCCTCTTTAGTGTTCTACTTTGTCACACC : 1687621 147 : oLeu : 147 |||| oLeu 1687622 : ACTC : 1687626 vulgar: AfOr91_2 6 147 . KQ414915.1 1685772 1687626 + 252 M 58 174 5 0 2 I 0 1427 3 0 2 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1685773 1687626 252 + . gene_id 6 ; sequence AfOr91_2 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1685773 1685946 . + . KQ414915.1 exonerate:protein2genome:local exon 1685773 1685946 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1685947 1685948 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1685947 1687377 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1687376 1687377 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1687378 1687626 . + . KQ414915.1 exonerate:protein2genome:local exon 1687378 1687626 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1685773 1687626 252 + . alignment_id 6 ; Query AfOr91_2 ; Align 1685773 7 174 ; Align 1687378 65 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 196 Query range: 148 -> 235 Target range: 1681722 -> 1682094 149 : GluAsnIleGlyLysAsnGluSerSerArgMetLeuProPheAsnMetTrpVal<- : 167 |||||||||||||||!:!!!:..!..!|||!!:||||||||| .!. ! ||| GluAsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPh 1681723 : gaGAACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTT : 1681777 168 : >AsnLeuProLeuAsnValThrProTyrPheGluIleThrTyrThrLeuGlnValL : 185 ||||||||| !::!:!!|||||||||:::|||||| :::..!:!!:!!||| eAsnLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGluValA 1681778 : TAACTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGGTGA : 1681834 186 : euSerLeu >>>> Target Intron 1 >>>> AlaLeuSerLeuTyrHisI : 194 !!:! ! 108 bp .!!||||||:!! ||| rgAsnLys-- ++ThrLeuSerValValHisS 1681835 : GAAACAAGta.........................agACATTATCTGTGGTGCATT : 1681969 195 : leGlyValSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisVal : 212 |||:!!!!!!:!! !||||||||||||||||||||||||:!!!:!:!!|||||| erGlyIleCysPheCysCysPheAspAsnPheLeuCysIleLeuSerMetHisVal 1681970 : CGGGAATTTGTTTCTGTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTC : 1682023 213 : AlaGlyGlnPheGlnValLeuGlnHisArgIleSerAsnIleIleAspSerMetAs : 231 !.!|||||||||:!!:!!||||||:!!!:!:!!..!!..:!!:!:..!..!! :: GlyGlyGlnPheLysIleLeuGlnAsnLysLeuGlnThrValLeuSerGluLysSe 1682024 : GGTGGACAGTTTAAGATTTTACAAAACAAACTCCAAACAGTATTGAGTGAGAAatc : 1682080 232 : nLysGluLysGlu : 235 :...::::::::: rSerLysGluLys 1682081 : ttcgaaagaaaaa : 1682094 vulgar: AfOr91_2 148 235 . KQ414915.1 1681722 1682094 + 196 M 18 54 G 0 3 M 21 63 5 0 2 I 0 104 3 0 2 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681723 1682094 196 + . gene_id 7 ; sequence AfOr91_2 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681723 1681842 . + . KQ414915.1 exonerate:protein2genome:local exon 1681723 1681842 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681843 1681844 . + . intron_id 1 ; splice_site "Ta" KQ414915.1 exonerate:protein2genome:local intron 1681843 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682094 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682094 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681723 1682094 196 + . alignment_id 7 ; Query AfOr91_2 ; Align 1681723 149 54 ; Align 1681780 167 63 ; Align 1681951 188 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 2 -> 64 Target range: 1710209 -> 1710395 3 : PheLeuGluSerAspIleSerValAsnLeuThrSerIlePheMetLysIleIleGl : 21 ||| ! ..!|||:!!.!! !!!:!:!!||||||!!:|||:!!|||!!:||||| PheLysThrAspAspLeuGlyPheSerValThrSerMetPheValLysMetIleGl 1710210 : TTCAAGACTGACGACTTAGGTTTCAGCGTGACTTCGATGTTCGTGAAAATGATCGG : 1710264 22 : yLeuTrpMetAlaThrAsnArgHisGluLysArgIleArgAsnIleThrIleIleT : 40 |||||||||||||! !|||!:! !|||:!!!.!:!!||||||:!:|||:!:.!!| yLeuTrpMetAlaLysAsnGlnPheGluGlnHisValArgAsnValThrLeuPheT 1710265 : ATTGTGGATGGCGAAAAATCAGTTCGAGCAACATGTCAGAAACGTGACGTTGTTCT : 1710321 41 : yrSerLeuIleAlaIleLeuPheAlaLeuTrpIleGlnSerMetAsnIleTyrTyr : 58 ||:::...... ::: |||!.!!!!!:::!::!!:!!! !|||:!:|||:!! yrThrPhePhePheValSerPheGlyPheTyrValGluAlaThrAsnLeuTyrHis 1710322 : ACacattcttcttcgtttccttcGGATTCTACGTGGAAGCTACGAACCTGTACCAC : 1710375 59 : SerTrpGlyAspPheSer : 64 ||||||||||||.!!||| SerTrpGlyAspLeuSer 1710376 : TCGTGGGGCGATCTCAGC : 1710395 vulgar: AfOr91_2 2 64 . KQ414915.1 1710209 1710395 + 172 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1710210 1710395 172 + . gene_id 8 ; sequence AfOr91_2 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1710210 1710395 . + . KQ414915.1 exonerate:protein2genome:local exon 1710210 1710395 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1710210 1710395 172 + . alignment_id 8 ; Query AfOr91_2 ; Align 1710210 3 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 255 -> 395 Target range: 1677752 -> 1678746 256 : PheLysLysCysIleArgGlnHisGlnAlaLeuIleAlaTyrCysArgLysLeuGl : 274 |||:::||||||:!:|||!:!||| ! !||||||! !||| ..!:::|||.. PheGluLysCysLeuArgArgHisTyrLeuLeuIleAspTyrValGluGluLeuAs 1677753 : ttcgagaaatgcTTGCGTCGACACTATTTGCTCATTGACTACGTAGAGgaattgaa : 1677807 275 : uGlnValPheAsnLeuIleValLeuGluGlnValLeuMetPheSerLeuLeuIleC : 293 ....:::|||!!.! !! !:!!||| !|||:!!:!!! ! ||||||||||||| nAsnLeuPheLysTyrThrLeuLeuLeuGlnMetMetThrSerSerLeuLeuIleC 1677808 : taatttgttCAAATACACCCTTCTGTTACAGATGATGACCTCGAGTTTGTTAATCT : 1677864 294 : ysLeuAspGlyTyrGlnIleLeuLeu >>>> Target Intron 1 >>>> A : 302 ||:!!..!||||||:!! !|||:!! 580 bp ysMetSerGlyTyrGluCysLeuVal++ ++T 1677865 : GTATGTCTGGTTACGAATGTTTAGTGgt.........................agT : 1678471 303 : laAsnGlyAspValLysThrArgLeuIlePheSerPheHisIleLeuGlyCysLeu : 320 !.!.!.!..!:!! !! !|||:!!:!!!:!! !.!.:!!!!::!!!.!! :!! yrGlnAlaSerLeuLeuLysArgMetValTyrIleMetTyrMetValAlaSerVal 1678472 : ACCAGGCATCCTTGCTAAAACGCATGGTCTACATCATGTACATGGTTGCCTCAGTG : 1678525 321 : CysGlnLeuLeuMetPheSerTyrSerCysAspCysIleIleArgLysSerValAs : 339 ! :!!|||! !:!!.!. ! !!! ||| :!:! !! ! ! ||| ! SerGluLeuTrpLeuIleValArgThrValAspGluLeuThrThrHisSerLysAl 1678526 : TCAGAATTATGGTTGATAGTCCGAACCGTAGACGAACTGACCACTCATAGCAAAGC : 1678582 340 : nValAlaThrAlaAlaTyrGlyGlyProTrpProLeuLeuSerMetThrThrSerG : 358 :!!!.! !||| !|||..!..! !||| !:!:::: ... aIleGlyAspAlaMetTyrSerSerAspTrpGlyValIlePheGlyLysLeuGluL 1678583 : GATCGGCGATGCGATGTATTCCTCGGATTGGGGAGTgatctttggaaaattggaga : 1678639 359 : lyArgMetIleArgLysAspLeuIleLeuValIleMetArgSerSerValProCys : 376 :::::: ||| :!: !..!!!::!:! !!!!|||:!! ! ysLysLeu------LysPheAlaLeuThrThrMetValIleArgSerIleGluThr 1678640 : agaaatta------aaatttgcctTGACGACGATGGTTATCAGATCGATCGAGACG : 1678687 377 : CysLeuThrGlyLysGlyPhePheMetValSerLeuGluThrTyrThrSerValLe : 395 |||! !! ! ! ||||||||| !|||||| !||||||!:!|||||||||:! CysSerMetLysAlaGlyPhePheAlaValSerSerGluThrPheThrSerValIl 1678688 : TGTTCTATGAAAGCTGGCTTCTTTGCGGTCTCCAGTGAGACGTTTACATCGGTAAT : 1678744 396 : u : 395 ! e 1678745 : T : 1678746 vulgar: AfOr91_2 255 395 . KQ414915.1 1677752 1678746 + 146 M 46 138 5 0 2 I 0 576 3 0 2 M 59 177 G 2 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1677753 1678746 146 + . gene_id 9 ; sequence AfOr91_2 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1677753 1677890 . + . KQ414915.1 exonerate:protein2genome:local exon 1677753 1677890 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1677891 1677892 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1677891 1678470 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1678469 1678470 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1678471 1678746 . + . KQ414915.1 exonerate:protein2genome:local exon 1678471 1678746 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local similarity 1677753 1678746 146 + . alignment_id 9 ; Query AfOr91_2 ; Align 1677753 256 138 ; Align 1678471 302 177 ; Align 1678648 363 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 248 -> 301 Target range: 1688493 -> 1688652 249 : AlaSerLysCysTyrAlaIlePheLysLysCysIleArgGlnHisGlnAlaLeuIl : 267 .!!!:!|||||||||.!!! .!.! ! ! ||||||!:!.!.||||||:!!||||| ThrAsnLysCysTyrThrLysLeuIleAspCysIleLysAsnHisGlnSerLeuIl 1688494 : ACGAACAAATGTTACACCAAGCTGATAGATTGCATCAAAAATCATCAGTCGTTGAT : 1688548 268 : eAlaTyrCysArgLysLeuGluGlnValPheAsnLeuIleValLeuGluGlnValL : 286 |! !!:!||| !|||||||||.!.|||!:!!..|||! !:!!|||! !!.:!!: eGluPheCysValLysLeuGluAsnValTyrThrLeuThrIleLeuGlyHisIleV 1688549 : CGAGTTCTGCGTGAAACTCGAGAACGTGTACACGTTGACTATACTCGGCCACATAG : 1688605 287 : euMetPheSerLeuLeuIleCysLeuAspGlyTyrGlnIleLeuLeu : 301 !!:!:||||||||||||!!:|||!!!||| !|||:!!:!!:!!||| alValPheSerLeuLeuMetCysPheAspThrTyrGluValValLeu 1688606 : TGGTCTTCAGCTTGTTGATGTGCTTCGACACGTACGAGGTAGTTCTG : 1688652 vulgar: AfOr91_2 248 301 . KQ414915.1 1688493 1688652 + 143 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688494 1688652 143 + . gene_id 10 ; sequence AfOr91_2 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1688494 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688494 1688652 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688494 1688652 143 + . alignment_id 10 ; Query AfOr91_2 ; Align 1688494 249 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 4 -> 62 Target range: 1692088 -> 1692262 5 : GluSerAspIleSerValAsnLeuThrSerIlePheMetLysIleIleGlyLeuTr : 23 ...!.!|||||||||:!! !! !:!!! !.!!!!.|||||||||:!!|||||||| SerLysAspIleSerIleValTrpSerPhePheLeuMetLysIleValGlyLeuTr 1692089 : AGTAAAGATATCTCGATCGTTTGGTCGTTCTTTTTGATGAAAATCGTAGGTCTGTG : 1692143 24 : pMetAlaThrAsnArgHisGluLysArgIleArgAsnIleThrIleIleTyrSerL : 42 |:!:|||.!!:!!..! !|||:!!||| ||||||.!!.!!:!:||||||!!!| pLeuAlaAlaAspGluAlaGluGlnArgArgArgAsnPheAlaLeuIleTyrThrL 1692144 : GCTAGCCGCCGACGAGGCTGAACAACGTCGGAGAAATTTCGCGCTGATTTACACGC : 1692200 43 : euIleAlaIleLeuPheAlaLeuTrpIleGlnSerMetAsnIleTyrTyrSerTrp : 60 ||! !||||||!!!.!!|||! !!! ||| !! !! :!!||||||||||||||| euAsnAlaIlePheIleAlaSerCysIleAlaMetArgAspIleTyrTyrSerTrp 1692201 : TGAACGCGATTTTTATCGCTTCGTGTATAGCAATGAGAGATATATACTATTCCTGG : 1692254 61 : GlyAsp : 62 |||:!! GlyAsn 1692255 : GGAAAC : 1692262 vulgar: AfOr91_2 4 62 . KQ414915.1 1692088 1692262 + 138 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1692089 1692262 138 + . gene_id 11 ; sequence AfOr91_2 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1692089 1692262 . + . KQ414915.1 exonerate:protein2genome:local exon 1692089 1692262 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1692089 1692262 138 + . alignment_id 11 ; Query AfOr91_2 ; Align 1692089 5 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 6 -> 69 Target range: 1700467 -> 1700656 7 : AspIleSerValAsnLeuThrSerIlePheMetLysIleIleGlyLeuTrpMetAl : 25 |||:!!||||||!:!:!!|||:!!.!!!:!:!!||||||||||||!!!|||:!:|| AspValSerValSerValThrAlaPheTyrLeuLysIleIleGlyPheTrpLeuAl 1700468 : GACGTATCAGTGAGCGTCACAGCTTTCTACTTGAAAATCATCGGCTTCTGGTTAGC : 1700522 26 : aThrAsnArgHisGluLysArgIleArgAsnIleThrIleIleTyrSerLeuIleA : 44 | !!.! !.!.||||||||| !|||!!..!!.!! ! !! !!!!:!!:!! aAspThrTyrGluGluLysArgArgArgLysPheAlaGlnAsnCysThrIleLeuM 1700523 : TGACACTTACGAGGAGAAACGTCGAAGAAAGTTCGCGCAGAATTGCACGATACTTA : 1700579 45 : laIleLeuPheAlaLeuTrpIleGlnSerMetAsnIleTyrTyrSerTrpGlyAsp : 62 !:!!:!!! !|||:!! !:!!:!! !! !:!!||||||:!!! !||||||||| etLeuMetCysAlaValLeuLeuGluValArgAspIleTyrHisIleTrpGlyAsp 1700580 : TGCTTATGTGCGCTGTGCTGCTTGAGGTGAGGGATATCTATCACATCTGGGGAGAT : 1700633 63 : PheSerAlaCysLeuPheSer : 69 |||.!!!.! !! ! !!||| PheGlyValSerThrValSer 1700634 : TTCGGCGTAAGTACAGTTTCA : 1700656 vulgar: AfOr91_2 6 69 . KQ414915.1 1700467 1700656 + 124 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1700468 1700656 124 + . gene_id 12 ; sequence AfOr91_2 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1700468 1700656 . + . KQ414915.1 exonerate:protein2genome:local exon 1700468 1700656 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1700468 1700656 124 + . alignment_id 12 ; Query AfOr91_2 ; Align 1700468 7 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 6 -> 69 Target range: 1704915 -> 1705104 7 : AspIleSerValAsnLeuThrSerIlePheMetLysIleIleGlyLeuTrpMetAl : 25 |||:!!||||||!:!:!!|||:!!.!!!:!:!!||||||||||||!!!|||:!:|| AspValSerValSerValThrAlaPheTyrLeuLysIleIleGlyPheTrpLeuAl 1704916 : GACGTATCAGTGAGCGTCACAGCTTTCTACTTGAAAATCATCGGCTTCTGGTTAGC : 1704970 26 : aThrAsnArgHisGluLysArgIleArgAsnIleThrIleIleTyrSerLeuIleA : 44 | !!.! !.!.||||||||| !|||!!..!!.!! ! !! !!!!:!!:!! aAspThrTyrGluGluLysArgArgArgLysPheAlaGlnAsnCysThrIleLeuM 1704971 : TGACACTTACGAGGAGAAACGTCGAAGAAAGTTCGCGCAGAATTGCACGATACTTA : 1705027 45 : laIleLeuPheAlaLeuTrpIleGlnSerMetAsnIleTyrTyrSerTrpGlyAsp : 62 !:!!:!!! !|||:!! !:!!:!! !! !:!!||||||:!!! !||||||||| etLeuMetCysAlaValLeuLeuGluValArgAspIleTyrHisIleTrpGlyAsp 1705028 : TGCTTATGTGCGCTGTGCTGCTTGAGGTGAGGGATATCTATCACATCTGGGGAGAT : 1705081 63 : PheSerAlaCysLeuPheSer : 69 |||.!!!.! !! ! !!||| PheGlyValSerThrValSer 1705082 : TTCGGCGTAAGTACAGTTTCA : 1705104 vulgar: AfOr91_2 6 69 . KQ414915.1 1704915 1705104 + 124 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1704916 1705104 124 + . gene_id 13 ; sequence AfOr91_2 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1704916 1705104 . + . KQ414915.1 exonerate:protein2genome:local exon 1704916 1705104 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1704916 1705104 124 + . alignment_id 13 ; Query AfOr91_2 ; Align 1704916 7 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 7 -> 66 Target range: 1680289 -> 1680466 8 : IleSerValAsnLeuThrSerIlePheMetLysIleIleGlyLeuTrpMetAlaTh : 26 .!!|||:!!...|||||| !!|||.!!|||||||||||||||!!!|||! !.! PheSerIleArgLeuThrArgIleLeuMetLysIleIleGlyPheTrpAsnValGl 1680290 : TTTTCCATTCGACTCACACGGATACTCATGAAAATCATAGGCTTCTGGAATGTTCA : 1680344 27 : rAsnArgHisGluLysArgIleArgAsnIleThrIleIleTyrSerLeuIleAlaI : 45 !!..|||...|||:!!! !||| !...:!!!.! !:!:|||! !|||:!!!.!: nThrArgArgGluGlnLeuIleLeuArgValAsnTyrLeuTyrMetLeuLeuValL 1680345 : GACAAGAAGGGAACAGCTGATATTGCGAGTCAACTATCTGTACATGTTGCTCGTTC : 1680401 46 : leLeuPheAlaLeuTrpIleGlnSerMetAsnIleTyrTyrSerTrpGlyAspPhe : 63 !!! ! ! :!!:!! |||:!!! !:!::!!:!!||||||!!! !! !|||!!. euSerValSerIleThrIleGluLeuLeuAspLeuTyrTyrCysArgHisAspLeu 1680402 : TTTCTGTATCTATAACAATCGAATTGTTAGATCTTTATTATTGCCGGCATGATTTA : 1680455 64 : SerAlaCys : 66 ! !!.!||| TyrValCys 1680456 : TATGTGTGT : 1680466 vulgar: AfOr91_2 7 66 . KQ414915.1 1680289 1680466 + 108 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1680290 1680466 108 + . gene_id 14 ; sequence AfOr91_2 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1680290 1680466 . + . KQ414915.1 exonerate:protein2genome:local exon 1680290 1680466 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1680290 1680466 108 + . alignment_id 14 ; Query AfOr91_2 ; Align 1680290 8 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_1 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 1119 Query range: 2 -> 405 Target range: 1710209 -> 1713327 3 : PheLeuGluSerAspIleSerValArgLeuThrSerIlePheMetLysLeuValGl : 21 ||| ! ..!|||:!!.!! !!!!!:!!||||||!!:|||:!!|||:!!:!!|| PheLysThrAspAspLeuGlyPheSerValThrSerMetPheValLysMetIleGl 1710210 : TTCAAGACTGACGACTTAGGTTTCAGCGTGACTTCGATGTTCGTGAAAATGATCGG : 1710264 22 : yLeuTrpMetAlaAlaAsnGlnTyrGluGlnArgMetArgAsnAlaMetIleThrT : 40 ||||||||||||| !||||||!:!||||||!.!:!:||||||!.!! !:!: !| yLeuTrpMetAlaLysAsnGlnPheGluGlnHisValArgAsnValThrLeuPheT 1710265 : ATTGTGGATGGCGAAAAATCAGTTCGAGCAACATGTCAGAAACGTGACGTTGTTCT : 1710321 41 : yrAsnValValAlaIleLeuPheAlaLeuTrpIleGlnThrMetAspIleTyrTyr : 58 ||... ::: |||!.!!!!!:::!::!!.!!! !:!!:!:|||:!! yrThrPhePhePheValSerPheGlyPheTyrValGluAlaThrAsnLeuTyrHis 1710322 : ACacattcttcttcgtttccttcGGATTCTACGTGGAAGCTACGAACCTGTACCAC : 1710375 59 : SerTrpGlyAsnLeuSerAla{C} >>>> Target Intron 1 >>>> {ys : 66 |||||||||:!!||||||!.!{ } 464 bp {! SerTrpGlyAspLeuSerVal{A}++ ++{rg 1710376 : TCGTGGGGCGATCTCAGCGTG{A}gt.........................ag{GA : 1710864 67 : }----IlePheSerThrSerAsnThrLeuSerLeuIleLeuProLeuLeuLysIle : 83 }####:!:|||..!! !!!!!.! !||||||:!!|||:!!||| !:!!|||||| }####LeuPheAspIleCysThrLeuLeuSerValIleMetProAlaIleLysIle 1710865 : }CACACTGTTCGACATATGCACTCTTCTGTCGGTGATAATGCCCGCTATCAAAATA : 1710918 84 : PheIleLeuLeuSerHisLysGluGluPhePheArgLeuIleValTyrMetGlnAr : 102 .!!||||||!!!! !:!!||||||||||||||||||||||||||||||! :!!|| IleIleLeuPheIleAsnLysGluGluPhePheArgLeuIleValTyrThrGluAr 1710919 : ATCATCCTGTTTATCAACAAGGAGGAGTTTTTCCGTTTGATCGTGTACACAGAGCG : 1710975 103 : gAsnPheLeuArgGlyAsnTyrAspAspTyrGluArgGluValValPheGlyCysL : 121 |.!.|||:!!!.!|||:!!|||:!!!!: !!||||||:!!:!!||||||! !|||| gGlnPheMetAsnGlyAspTyrAsnGluAspGluArgLysIleValPheAspCysL 1710976 : ACAATTCATGAACGGGGATTACAACGAGGACGAGAGGAAGATTGTGTTCGATTGTA : 1711032 122 : ysArgLysCysThrPhePheIleCysPhePheThrPhePheThrMetAlaThrIle : 139 ||||| !||||||||||||! !||||||.!!:!!! ! ! |||:!::!! !:!! ysArgLeuCysThrPhePheThrCysPheLeuSerSerValThrLeuSerCysVal 1711033 : AACGCCTGTGTACATTCTTCACTTGTTTCCTCTCATCTGTGACTTTATCGTGCGTT : 1711086 140 : ValSerTyrIleAlaSerProIleVal{G} >>>> Target Intron 2 >>> : 149 :!!||||||:!!!.!!!!|||||| !{ } 113 bp LeuSerTyrValValThrProIleTyr{I}++ 1711087 : CTCTCTTACGTCGTCACTCCAATTTAC{A}gt........................ : 1711119 150 : > {ly}LeuAlaAsnIleGlyLysAsnGluSerAspArgValLeuProPheAsnM : 166 { !} ...|||||||||!:!|||||||||||||||:!!|||||||||!!.| -+{le}SerValAsnIleGlyArgAsnGluSerAspArgIleLeuProPheLysM 1711120 : .tg{TT}TCAGTGAATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAA : 1711280 167 : etTrpValAsnLeuProLeuSerMetThrProTyrPheGluIleThrPheThrLeu : 184 |||||:!!:!!:!!||| !|||||||||||||||||||||||| ||||||||| etTrpIleAspIleProThrSerMetThrProTyrPheGluIlePhePheThrLeu 1711281 : TGTGGATTGATATACCGACATCGATGACACcgtattttgaaatattcttcaccTTA : 1711334 185 : Gln >>>> Target Intron 3 >>>> ThrLeuSerLeuTyrGlnIleGly : 193 ||| 546 bp ..!|||||| !|||||||||||| Gln++ ++ValLeuSerAlaTyrGlnIleGly 1711335 : CAGgt.........................agGTTTTATCCGCGTATCAAATTGGC : 1711907 194 : ValSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGl : 212 ||||||||| !|||||||||||| !!|||||||||||||||||||||:!!||| ValSerTyrGlyCysPheAspAsnValLeuCysIleMetAsnLeuHisLeuAlaTh 1711908 : GTGAGTTACGGTTGCTTCGACAACGTTCTATGCATCATGAACCTACACTTGGCCAC : 1711964 213 : yGlnPheLysValLeuGlnTyrArgIleSerAsnIleAlaAspLeuIleIleLys< : 231 !||||||::!:!!||||||:!!|||:!: !|||||| !! !|||! ! !||| rGlnPheArgIleLeuGlnHisArgLeuValAsnIleAsnGlyLeuLysSerLysG 1711965 : TCAGTTTCGAATACTGCAACATAGACTGGTGAATATAAACGGTCTGAAGAGCAAAC : 1712021 232 : ->ThrGluGluLysArgGluLysLeuIleValAspSerSerTyrPheSerSerLys : 248 ||| !|||||| !!|||! !! !|||:!!||||||!!! ! |||:!!..!!!. lnThrProGluLysGlyGluThrSerIleIleAspSerThrGluPheAlaAspAsn 1712022 : AGACACCGGAGAAAGGTGAAACGTCGATTATAGATTCGACAGAATTTGCGGATAAC : 1712075 249 : CysTyrThrThrPheLysLysCysIleArgGlnHisGlnThrLeuIleThrTyrCy : 267 ! !||| !..!||||||!:!|||:!!||||||||||||:!!|||!!:.!!!:!|| SerTyrAspValPheLysArgCysValArgGlnHisGlnSerLeuMetAlaPheCy 1712076 : TCTTACGACGTTTTCAAAAGATGCGTTCGTCAACATCAATCTCTGATGGCTTTCTg : 1712132 268 : sArgLysLeuGluAlaValPheAsnLeuIleValLeuGluGlnValLeuMetPheS : 286 |...||||||||| :::|||!:!:!!|||:!!|||! !|||:!!|||:!!|||| sGluLysLeuGluGluMetPheSerMetIleIleLeuGlyGlnLeuLeuValPheS 1712133 : cgagaaactcgaagaaatgTTCAGTATGATTATACTGGGGCAATTGTTAGTGTTCA : 1712189 287 : erLeuLeuIleCysLeuAspGlyTyrGlnIleLeuMet >>>> Target Intr : 299 ||:!!!!!!!:|||||||||! !! !|||:!!|||:!! 142 bp erIlePheMetCysLeuAspValCysGlnValLeuLeu++ 1712190 : GTATTTTTATGTGTCTCGACGTGTGCCAAGTACTTCTGgt................ : 1712230 300 : on 4 >>>> AlaAspGlyAspIleLysThrArgLeuIlePheSerLeuHisVal : 313 !!! !!.!..!:!: ! !!:!:::||||||:::...|||::! ++ProGlyAlaSerValGlyLysGlnMetIlePheThrPheHisLeu 1712231 : .........agCCAGGTGCATCTGTGGGTAAACAGAtgattttcacgtttcacctA : 1712412 314 : LeuAlaCysLeuCysGlnLeuLeuMetPheSerTyrSerCysAspCysIleIleAr : 332 !!.!|||:!!||||||||||||||||||!!!|||||||||||||||||||||! AlaGlyCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleTh 1712413 : GCGGGATGTATGTGTCAATTGCTGATGTTTACGTACAGCTGCGATTGTATAATAAC : 1712469 333 : gGluSerValAsnValAlaThrAlaAlaTyrGlyGlyProTrpThrLeuLeuProM : 351 !||||||:!!||||||.!! !|||!.!|||! !||||||||| !!! !||||||| rGluSerLeuAsnValThrGluAlaValTyrAspGlyProTrpProArgLeuProM 1712470 : GGAAAGTTTGAACGTGACGGAAGCGGTGTACGATGGACCATGGCCACGTTTGCCAA : 1712526 352 : etThrThrAsnGlyLysMetMetArgLysAspLeuIleValValIleMetArgSer : 369 ||!:!|||!..|||!:!|||!!:|||||||||||||||:!!||||||!!:|||||| etSerThrArgGlyArgMetIleArgLysAspLeuIleLeuValIleIleArgSer 1712527 : TGAGCACGAGAGGAAGAATGATAAGGAAGGATTTGATACTCGTTATCATAAGATCG : 1712580 370 : SerIleProCysCysLeuThrGlyLys<->PhePheIleValSerLeuGluThrTy : 387 !!!:!!|||||||||||||||!.!!:! ||||||:!!:!!|||||||||||||| ArgValProCysCysLeuThrAlaArgGlyPhePheValIleSerLeuGluThrTy 1712581 : AGAGTACCTTGTTGCTTGACCGCCAGAGGATTCTTCGTAATATCTTTGGAAACGTA : 1712637 388 : rThrSer >>>> Target Intron 5 >>>> ValLeuSerThrAlaAlaSe : 396 ||||!.! 634 bp |||:!!|||||||||!.!|| rThrLys++ ++ValIleSerThrAlaValSe 1712638 : TACGAAGgt.........................agGTTATAAGTACAGCAGTGTC : 1713298 397 : rTyrPheThrLeuLeuArgAsnAsnIle : 405 |||||||||||||||||||.!...!||| rTyrPheThrLeuLeuArgGlnArgIle 1713299 : GTACTTCACACTGTTAAGGCAACGTATA : 1713327 vulgar: AfOr91_1 2 405 . KQ414915.1 1710209 1713327 + 1119 M 63 189 S 0 1 5 0 2 I 0 460 3 0 2 S 1 2 F 0 4 M 82 246 S 0 1 5 0 2 I 0 109 3 0 2 S 1 2 M 36 108 5 0 2 I 0 542 3 0 2 M 45 135 G 0 3 M 68 204 5 0 2 I 0 138 3 0 2 M 80 240 G 0 3 M 11 33 5 0 2 I 0 630 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1710210 1713327 1119 + . gene_id 1 ; sequence AfOr91_1 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1710210 1710399 . + . KQ414915.1 exonerate:protein2genome:local exon 1710210 1710399 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1710400 1710401 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1710400 1710863 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1710862 1710863 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1710864 1711116 . + . KQ414915.1 exonerate:protein2genome:local exon 1710864 1711116 . + . insertions 0 ; deletions 0 ; frameshifts 4 KQ414915.1 exonerate:protein2genome:local splice5 1711117 1711118 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711117 1711229 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1711228 1711229 . + . intron_id 1 ; splice_site "TG" KQ414915.1 exonerate:protein2genome:local cds 1711230 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711230 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712227 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712228 1712229 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712228 1712369 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1712368 1712369 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1712370 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712370 1712645 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 5 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 5 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 4 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713327 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713327 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1710210 1713327 1119 + . alignment_id 1 ; Query AfOr91_1 ; Align 1710210 3 189 ; Align 1710870 67 246 ; Align 1711232 150 108 ; Align 1711886 186 135 ; Align 1712024 231 204 ; Align 1712370 299 240 ; Align 1712613 379 33 ; Align 1713280 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_1 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 745 Query range: 1 -> 298 Target range: 1697509 -> 1699971 2 : GlyPheLeuGluSerAspIleSerValArgLeuThrSerIlePheMetLysLeuVa : 20 |||! ! ! !.!|||.!!:!!:!! !:!!||||||.!!!!.||||||:!!|| GlySerHisThrLysAspPheAlaLeuLeuMetThrSerPheLeuMetLysIleVa 1697510 : GGGTCGCACACCAAAGATTTTGCTCTGTTAATGACGTCGTTTTTAATGAAGATCGT : 1697564 21 : lGlyLeuTrpMetAlaAlaAsnGlnTyrGluGlnArgMetArgAsnAlaMetIleT : 39 ||||||||||:!:||| !:!!... ! |||:!!|||! !|||... !! :!:! lGlyLeuTrpLeuAlaLysAspSerLysGluGluArgLysArgArgTyrThrLeuI 1697565 : CGGTCTTTGGTTAGCGAAAGACAGCAAGGAGGAACGCAAGCGTCGGTACACTTTGA : 1697621 40 : hrTyrAsnValValAlaIleLeuPheAlaLeuTrpIleGlnThrMetAspIleTyr : 57 !|||!..||||||||||||||||||!.!:!!|||:!:||| !! |||.!!||| leTyrThrValValAlaIleLeuPheGlyValTrpValGlnPheArgAspPheTyr 1697622 : TCTATACGGTGGTCGCGATTTTGTTTGGAGTGTGGGTGCAGTTCAGAGACTTCTAT : 1697675 58 : TyrSerTrpGlyAsnLeuSer >>>> Target Intron 1 >>>> AlaCys : 66 ||||||||| !|||!!!.!! 849 bp !||| TyrSerTrpProAsnPheGly++ ++AspCys 1697676 : TACTCCTGGCCGAATTTTGGCgt.........................aggACTGT : 1698551 67 : IlePheSerThrSerAsnThrLeuSerLeuIleLeuProLeuLeuLysIlePheIl : 85 !!:!!!!.!!!!!|||! !|||!!!||||||:!! !|||||||||:!:|||:! AlaTyrThrAlaCysAsnIleLeuCysLeuIleMetValLeuLeuLysLeuPheVa 1698552 : GCTTACACCGCTTGTAACATTCTCTGCCTGATTATGGTACTGTTAAAGCTGTTCGT : 1698608 86 : eLeuLeuSerHisLysGluGluPhePheArgLeuIleValTyrMetGlnArgAsnP : 104 !:!!!!!! !|||!:!:!!||||||.!!..!|||:::||||||||| :::|||| lValPheIleHisArgLysGluPheIleGluLeuLeuValTyrMetTyrLysAsnP 1698609 : TGTATTCATACACAGGAAAGAATTCATCGAACTgcttgtatatatgtacaaaaatt : 1698665 105 : heLeuArgGlyAsnTyrAspAspTyrGluArgGluValValPheGlyCysLysArg : 122 || ..! !||||||||| ! !!|||! ! !:!!:!! ! !|||!:!||| heTrpHisLeuAsnTyrAspCysAsnGluLeuLeuLeuLeuGlnAspCysArgArg 1698666 : tttggcACCTCAATTACGATTGCAACGAACTACTACTGCTGCAAGACTGCAGAAGA : 1698719 123 : LysCysThrPhePheIleCysPhePheThrPhePheThrMetAlaThrIleValSe : 141 ! !!|||.!.! !||| !!..!!!.!|||! !.!!...!.!||||||||||| IleSerThrIleCysIleThrLeuIleAsnPheCysAlaGlnGlyThrIleValSe 1698720 : ATTAGCACTATATGTATCACGTTGATTAACTTCTGTGCTCAAGGCACAATTGTCAG : 1698776 142 : rTyrIleAlaSerProIleValGlyLeu{A} >>>> Target Intron 2 >> : 151 ||||:!: !!!!||||||:!!||| {:} 226 bp rTyrValLeuThrProIleIleGlyGlu{S}-+ 1698777 : CTACGTGCTAACACCTATTATAGGtgag{t}tt....................... : 1698809 152 : >> {la}AsnIleGlyLysAsnGluSerAspArgValLeuProPheAsnMetTrp : 167 {::}|||||||||:::|||...|||||||||||||||||||||||||||||| ++{er}AsnIleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTrp 1698810 : ..ag{ca}aatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTGG : 1699080 168 : ValAsnLeuProLeuSerMetThrProTyrPheGluIleThrPheThrLeuGln : 186 |||:!!||||||||||||:!!:!!||| !:!||||||..!|||..!|||||| ValAspLeuProLeuSerValSerProThrTyrGluIleValPheValLeuGln++ 1699081 : GTTGATTTGCCGCTGTCTGTGTCACCAACGTACGAAATAGTGTTCGTGCTTCAGgt : 1699137 187 : >>>> Target Intron 3 >>>> ThrLeuSerLeuTyrGlnIleGlyValSe : 195 499 bp ..!||||||||||||!!.:!!||||||!! ++ValLeuSerLeuTyrHisValGlyValCy 1699138 : .........................agGTTCTGTCTTTGTACCACGTTGGTGTATG : 1699663 196 : rTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGlnP : 214 !|||.!!||||||||||||.!!||||||:!:||||||||||||!.!||| !|||| sTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnP 1699664 : TTACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAAT : 1699720 215 : heLysValLeuGlnTyrArgIleSerAsnIleAlaAspLeuIleIleLysThrGlu : 232 ||::::!!||||||||||||:!!||||||:!:!.!||| !! !! ||| !! ! heArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysGlnVal 1699721 : TTCGTATACTGCAATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTA : 1699774 233 : GluLysArgGluLysLeuIleValAspSerSerTyrPheSerSerLysCysTyrTh : 251 !!: ! !.!|||... ! !!.! !||| !|||:!!..!!!.||||||! AspAspAsnGluSerSerAlaAla---LeuSerArgPheAlaGluAsnCysTyrLy 1699775 : GATGACAATGAATCCAGCGCAGCT---CTGTCTCGTTTCGCGGAGAACTGTTATAA : 1699828 252 : rThrPheLysLysCysIleArgGlnHisGlnThrLeuIleThrTyrCysArgLysL : 270 !.!!||||||!!.|||:!!||||||||||||!.!! !||||||||||||!.!!:!| sAlaPheLysAsnCysValArgGlnHisGlnAsnHisIleThrTyrCysHisArgL 1699829 : GGCGTTTAAAAATTGCGTACGACAACATCAGAATCATATCACGTACTGTCACAGAT : 1699885 271 : euGluAlaValPheAsnLeuIleValLeuGluGlnValLeuMetPheSerLeuLeu : 288 ||.!.! !:!!|||!..:!!|||||||||! !!!.:!!|||:!:|||||||||||| euAsnGluIlePheThrValIleValLeuGlyHisIleLeuValPheSerLeuLeu 1699886 : TGAACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGCCTTCTG : 1699939 289 : IleCysLeuAspGlyTyrGlnIleLeuMet : 298 |||||||||! !|||!:!|||:!:|||:!: IleCysLeuValGlyPheGlnValLeuVal 1699940 : ATATGTCTGGTTGGATTCCAAGTGCTCGTA : 1699971 vulgar: AfOr91_1 1 298 . KQ414915.1 1697509 1699971 + 745 M 63 189 5 0 2 I 0 845 3 0 2 M 86 258 S 0 1 5 0 2 I 0 222 3 0 2 S 1 2 M 34 102 5 0 2 I 0 495 3 0 2 M 55 165 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1697510 1699971 745 + . gene_id 2 ; sequence AfOr91_1 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1697510 1697698 . + . KQ414915.1 exonerate:protein2genome:local exon 1697510 1697698 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1697699 1697700 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1697699 1698547 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1698546 1698547 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1698548 1698806 . + . KQ414915.1 exonerate:protein2genome:local exon 1698548 1698806 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1698807 1698808 . + . intron_id 2 ; splice_site "tt" KQ414915.1 exonerate:protein2genome:local intron 1698807 1699032 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1699031 1699032 . + . intron_id 1 ; splice_site "Ag" KQ414915.1 exonerate:protein2genome:local cds 1699033 1699136 . + . KQ414915.1 exonerate:protein2genome:local exon 1699033 1699136 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699137 1699138 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699137 1699635 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1699634 1699635 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699636 1699971 . + . KQ414915.1 exonerate:protein2genome:local exon 1699636 1699971 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1697510 1699971 745 + . alignment_id 2 ; Query AfOr91_1 ; Align 1697510 2 189 ; Align 1698548 65 258 ; Align 1699035 152 102 ; Align 1699636 186 165 ; Align 1699801 242 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_1 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 682 Query range: 151 -> 411 Target range: 1707001 -> 1709261 152 : AsnIleGlyLysAsnGluSerAspArgValLeuProPheAsnMetTrpValAsnLe : 170 !::||||||||||||||||||||||||:!!||| ! !!|||.!.|||:!!:!!!! SerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAspPh 1707002 : AgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGACTT : 1707056 171 : uProLeuSerMetThrProTyrPheGluIleThrPheThrLeuGln >>>> Tar : 186 !||| !!!!||||||||||||!:!|||||| !||||||! !||| eProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707057 : TCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt........ : 1707106 187 : get Intron 1 >>>> ThrLeuSerLeuTyrGlnIleGlyValSerTyrPheC : 198 276 bp ..!!!!! !:!! ! :!! !!:!!||||||.!!| ++ValPheIleValMetTyrValCysIleSerTyrLeuC 1707107 : .................agGTTTTTATCGTAATGTACGTTTGCATAAGCTACCTTT : 1707416 199 : ysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGlnPheLysVal : 216 ||.!!|||||||||||||||!!:!!:|||||||||..!||| !||||||::!:!! ysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIle 1707417 : GTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATA : 1707470 217 : LeuGlnTyrArgIleSerAsnIleAlaAspLeuIleIleLysThrGluGluLysAr : 235 ||||||||||||:!:||||||:!:..!! ! .!!.!.|||:::! LeuGlnTyrArgLeuSerAsnValCysGly------------AlaAsnGluArgSe 1707471 : TTGCAATACAGACTGTCGAATGTGTGCGGT------------GCAAACGAACGTAg : 1707515 236 : gGluLysLeuIleValAspSerSerTyrPheSerSerLysCysTyrThrThrPheL : 254 :::|||::: ::: !!! ! !|||..!:!!||||||.!!! !|||| rAspLysIleSerLysLysThrProSerAsnSerAspGluCysTyrAlaLysPheL 1707516 : cgataaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCA : 1707572 255 : ysLysCysIleArgGlnHisGlnThrLeuIleThrTyrCysArgLysLeuGluAla : 272 ||!!.||||||!:!|||||||||.!!|||||| !||||||!.!:!!|||:!!! ! ysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGlu 1707573 : AAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAG : 1707626 273 : ValPheAsnLeuIleValLeuGluGlnValLeuMetPheSerLeuLeuIleCysLe : 291 ||||||..!|||.!!||||||! !|||||||||:!:||||||||||||!!:||||| ValPheGlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLe 1707627 : GTGTTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCT : 1707683 292 : uAspGlyTyrGlnIleLeuMet >>>> Target Intron 2 >>>> AlaAs : 300 |||||||||| :!::!!||| 457 bp ! !|| uAspGlyTyr---LeuValMet++ ++GluAs 1707684 : CGATGGATAT---TTGGTGATGgt.........................agGAAGA : 1708164 301 : pGlyAspIleLysThrArgLeuIlePheSerLeuHisValLeuAlaCysLeuCysG : 319 | ! !|||! ! !||||||! !|||! !!!!|||:!! !!.!|||||||||| pThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysG 1708165 : TACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCC : 1708221 320 : lnLeuLeuMetPheSerTyrSerCysAspCysIleIleArgGluSerValAsnVal : 337 ||||||||||||||!!!|||||||||||||||:!:||||||||||||:!!|||||| lnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnVal 1708222 : AACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTG : 1708275 338 : AlaThrAlaAlaTyrGlyGlyProTrpThrLeuLeuProMetThrThrAsnGlyLy : 356 |||!.!||| !|||! ! !! !!|||! !! !||||||||| !! !::!|||:: AlaAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyAr 1708276 : GCCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCG : 1708332 357 : sMetMetArgLysAspLeuIleValValIleMetArgSerSerIleProCysCysL : 375 !|||:!!||||||||||||! ! !!|||||| ||||||!!!:!!|||||||||| gMetLeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysL 1708333 : AATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTC : 1708389 376 : euThrGly<->LysPhePheIleValSerLeuGluThrTyrThrSer >>>> Ta : 390 |||||!.! !|||||| !|||||||||||||||||||||||| euThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708390 : TCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt....... : 1708439 391 : rget Intron 3 >>>> ValLeuSerThrAlaAlaSerTyrPheThrLeuLeu : 401 759 bp :!!||||||||||||||||||||||||||||||||| ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeu 1708440 : ..................agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTA : 1709229 402 : ArgAsnAsnIleGlySerAlaAspGluThr : 411 |||!!..!. !!.!..! !! !|||||| ArgLysGlnGluAlaGluIleValGluThr 1709230 : CGAAAACAAGAAGCAGAAATAGTTGAAACA : 1709261 vulgar: AfOr91_1 151 411 . KQ414915.1 1707001 1709261 + 682 M 34 102 5 0 2 I 0 272 3 0 2 M 41 123 G 4 0 M 64 192 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 79 237 G 0 3 M 12 36 5 0 2 I 0 755 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707002 1709261 682 + . gene_id 3 ; sequence AfOr91_1 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1707002 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707002 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 5 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709261 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709261 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1707002 1709261 682 + . alignment_id 3 ; Query AfOr91_1 ; Align 1707002 152 102 ; Align 1707380 186 123 ; Align 1707503 231 192 ; Align 1707695 296 9 ; Align 1708161 299 237 ; Align 1708401 378 36 ; Align 1709196 390 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_1 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 611 Query range: 149 -> 404 Target range: 1694349 -> 1696257 150 : LeuAlaAsnIleGlyLysAsnGluSerAspArgValLeuProPheAsnMetTrpVa : 168 |||||||||:!!|||||||||:!!|||!!:|||:!!|||||||||||||||||||| LeuAlaAsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTrpVa 1694350 : TTAGCAAATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTGGGT : 1694404 169 : lAsnLeuProLeuSerMetThrProTyrPheGluIleThrPheThrLeuGlnThr{ : 187 |:!!!!!||| !.!!:!!:!!||||||!:!|||:!! !|||! !:!!|||..!{ lAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGlnVal{ 1694405 : TGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGGTA{ : 1694461 188 : L} >>>> Target Intron 1 >>>> {eu}SerLeuTyrGlnIleGlyVal : 194 :} 409 bp {!!}!!!:!!|||!!.:!!|||:!! I}+- +-{le}CysValTyrHisValGlyIle 1694462 : A}gc.........................ac{TT}TGCGTGTACCATGTCGGTATA : 1694891 195 : SerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGl : 213 !!!|||.!.||||||||||||.!!||| !!:!!:!!||||||||||||||| !|| CysTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGl 1694892 : TGTTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCA : 1694948 214 : nPheLysValLeuGlnTyrArgIleSerAsnIleAlaAspLeuIleIleLysThrG : 232 ||||::::!!||||||||||||.!!! !|||:!:::!:!!:!!||| ||| ! nPheArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLysGlnT 1694949 : ATTTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAA : 1695005 233 : luGluLysArgGluLysLeuIleValAspSerSerTyrPheSerSerLysCysTyr : 250 !!!: |||||| ||| ::: ! !!!! !!|||!!! ! ! !!||| hrAspGlyArgGlu---LeuGluIleGlyTyrThrAsnPheThrValAspSerTyr 1695006 : CAGACGGTcgagaa---ttggaaattggtTACACAAATTTCACAGTCGATAGTTAC : 1695056 251 : ThrThrPheLysLysCysIleArgGlnHisGlnThrLeuIleThrTyrCysArgLy : 269 ! !!!.|||!..|||:!:!:! ! ||||||.!!|||! ! !||||||!:!|| LeuGlnLeuLysSerCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLy 1695057 : TTACAATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAAA : 1695113 270 : sLeuGluAlaValPheAsnLeuIleValLeuGluGlnValLeuMetPheSerLeuL : 288 ||||||| !:!!|||:::|||:!!||||||! !|||||||||.!..!.:!!:!!: sLeuGluAsnIlePheSerLeuLeuValLeuGlyGlnValLeuPheLeuAlaMetV 1695114 : GTTGGAGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGG : 1695170 289 : euIleCysLeuAspGlyTyrGlnIleLeuMet >>>> Target Intron 2 > : 299 !!:!!||||||! |||||||||:!!!!!:!! 415 bp alLeuCysLeuValGlyTyrGlnLeuPheLeu++ 1695171 : TACTTTGCCTCGTGGGATATCAGCTATTTCTGgt...................... : 1695205 300 : >>> AlaAspGlyAspIleLysThrArgLeuIlePheSerLeuHisValLeuAla : 315 .!!|||..! !..!! !!.!:!! !!!. !|||:!!:!! !!.! ++ThrAspSerProProSerArgAsnValGlyLeuValLeuAsnLeuAlaGly 1695206 : ...agACAGACTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGC : 1695666 316 : CysLeuCysGlnLeuLeuMetPheSerTyrSerCysAspCysIleIleArgGluSe : 334 !||||||||||||!!!||||||!!!|||||||||||| !!:!:! !|||||||| ThrLeuCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGluSe 1695667 : ACTTTGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAG : 1695723 335 : rValAsnValAlaThrAlaAlaTyrGlyGlyProTrpThrLeuLeuProMetThrT : 353 |:!!:!!|||::!! !|||!.!!:!!.! !!||||||.!! !||||||||| !! rMetAspValSerArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAspA 1695724 : CATGGACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATA : 1695780 354 : hrAsnGlyLysMetMetArgLysAspLeuIleValValIleMetArgSerSerIle : 371 !|||||||||! :!!|||:!!..!:!!:!!:!!|||||||||||||||!:!! rgAsnGlyLysSerValArgGlnSerMetLeuMetValIleMetArgSerAsnArg 1695781 : GAAATGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGG : 1695834 372 : ProCysCysLeuThrGlyLys<->PhePheIleValSerLeuGluThrTyrThrSe : 389 !||||||||||||!.!!.. |||||| !|||||||||||||||||||||.! CysCysCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrGl 1695835 : TGTTGCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGG : 1695891 390 : r >>>> Target Intron 3 >>>> ValLeuSerThrAlaAlaSerTyrPh : 398 ! 319 bp ||||||||||||||| !|||||||| y++ ++ValLeuSerThrAlaMetSerTyrPh 1695892 : Ggt.........................agGTCCTCAGCACTGCAATGTCATACTT : 1696237 399 : eThrLeuLeuArgAsnAsn : 404 |||||||||||||.!.::: eThrLeuLeuArgGlnSer 1696238 : TACACTACTGAGACAATCG : 1696257 vulgar: AfOr91_1 149 404 . KQ414915.1 1694349 1696257 + 611 M 37 111 S 0 1 5 0 2 I 0 405 3 0 2 S 1 2 M 49 147 G 1 0 M 61 183 5 0 2 I 0 411 3 0 2 M 80 240 G 0 3 M 11 33 5 0 2 I 0 315 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694350 1696257 611 + . gene_id 4 ; sequence AfOr91_1 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694350 1694461 . + . KQ414915.1 exonerate:protein2genome:local exon 1694350 1694461 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694462 1694463 . + . intron_id 1 ; splice_site "GC" KQ414915.1 exonerate:protein2genome:local intron 1694462 1694870 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694869 1694870 . + . intron_id 0 ; splice_site "AC" KQ414915.1 exonerate:protein2genome:local cds 1694871 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694871 1695202 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 2 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696257 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696257 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694350 1696257 611 + . alignment_id 4 ; Query AfOr91_1 ; Align 1694350 150 111 ; Align 1694873 188 147 ; Align 1695020 238 183 ; Align 1695618 299 240 ; Align 1695861 379 33 ; Align 1696213 390 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_1 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 494 Query range: 184 -> 396 Target range: 1702013 -> 1703256 185 : GlnThrLeuSerLeuTyrGlnIleGlyValSerTyrPheCysPheAspAsnPheLe : 203 |||..!||||||||||||!!.:!!||||||!!!|||.!!||||||||||||.!!|| GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 204 : uCysIleMetAsnLeuHisValAlaGlyGlnPheLysValLeuGlnTyrArgIleS : 222 ||||:!:||||||||||||!.!||| !||||||::::!!||||||||||||:!!| uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 223 : erAsnIleAlaAspLeuIleIleLysThrGluGluLysArgGluLysLeuIleVal : 240 |||||:!:!.!||| !! !! ||| !! !!!: ! !.!|||... ! !!.! erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1702179 241 : AspSerSerTyrPheSerSerLysCysTyrThrThrPheLysLysCysIleArgGl : 259 !||| !|||:!!..!!!.||||||! !.!!||||||!!.|||:!!||||| ---LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGl 1702180 : ---CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACA : 1702233 260 : nHisGlnThrLeuIleThrTyrCysArgLysLeuGluAlaValPheAsnLeuIleV : 278 |||||||!.!! !||||||||||||!.!!:!|||.!.! !:!!|||!..:!!|||| nHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleV 1702234 : ACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTG : 1702290 279 : alLeuGluGlnValLeuMetPheSerLeuLeuIleCysLeuAspGlyTyrGlnIle : 296 |||||! !!!.:!!|||:!:|||||||||||||||||||||! !|||!:!|||:!: alLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnVal 1702291 : TACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTG : 1702344 297 : LeuMetAlaAspGlyAspIleLysThrArgLeuIlePheSer{L} >>>> Targ : 311 |||:!!!.! ! !! ! ! ::: ||| {:} LeuValValArgPheValGluProLeuIleIleLysPheHis{I}++ 1702345 : CTCGTGGTACGTTTCGTTGAACCTttgattattaaatttcat{a}gt......... : 1702392 312 : et Intron 1 >>>> {eu}HisValLeuAlaCysLeuCysGlnLeuLeuMetP : 323 607 bp {!!}|||:!!:!!!.! !!|||||||||||||||:!:| +-{le}HisIleValGlySerLeuCysGlnLeuLeuLeuP 1702393 : ................at{TT}CACATAGTCGGTAGTCTATGCCAACTATTGCTAT : 1703032 324 : heSerTyrSerCysAspCysIleIleArgGluSerValAsnValAlaThrAlaAla : 341 ||!!!|||||||||||| !!:!:|||..!||||||..!|||:!!!.!|||||| ! heThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaIle 1703033 : TTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGATA : 1703086 342 : TyrGlyGlyProTrpThrLeuLeuProMetThrThrAsnGlyLysMetMetArgLy : 360 ||| !|||||||||! !! !||||||||| !! ! !|||!:!! !:!!|||!: TyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArgAr 1703087 : TACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGAAG : 1703143 361 : sAspLeuIleValValIleMetArgSerSerIleProCysCysLeuThrGlyLys< : 379 !||||||! !:!!||||||:!:||||||!!!! ! !! !!|||||||||!.!!.. gAspLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSerG 1703144 : AGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAGCG : 1703200 380 : ->PhePheIleValSerLeuGluThrTyrThrSerValLeuSerThrAlaAlaSer : 396 |||||| !|||||||||||||||! !|||!!!|||!!!!:! !:!! !||| lyPhePheProValSerLeuGluThrCysThrThrValPheAsnPheSerPheSer 1703201 : GATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATTTCTCATTCTCT : 1703254 vulgar: AfOr91_1 184 396 . KQ414915.1 1702013 1703256 + 494 M 56 168 G 1 0 M 69 207 S 0 1 5 0 2 I 0 603 3 0 2 S 1 2 M 67 201 G 0 3 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1703256 494 + . gene_id 5 ; sequence AfOr91_1 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702014 1702389 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702389 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1702390 1702391 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1702390 1702996 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702995 1702996 . + . intron_id 0 ; splice_site "AT" KQ414915.1 exonerate:protein2genome:local cds 1702997 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1702997 1703256 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1703256 494 + . alignment_id 5 ; Query AfOr91_1 ; Align 1702014 185 168 ; Align 1702182 242 207 ; Align 1702999 312 201 ; Align 1703203 379 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_1 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 371 Query range: 6 -> 208 Target range: 1685772 -> 1689994 7 : AspIleSerValArgLeuThrSerIlePheMetLysLeuValGlyLeuTrpMetAl : 25 |||||||||:!!!:: ......:::|||||||||||||||||||||:! AspIleSerLeuLysCysGlyIlePheLeuLeuLysLeuValGlyLeuTrpMetSe 1685773 : GATATTTCCCTCAAgtgtggaatttttcttttgaaattagtCGGCCTCTGGATGTC : 1685827 26 : aAlaAsnGlnTyrGluGlnArgMetArgAsnAlaMetIleThrTyrAsnValValA : 44 ! !|||... !|||:!!||| |||!.. !! !:!: ! :::||| !!| rMetAsnSerValGluGluArgArgArgArgPheThrLeuPheGlySerValPheA 1685828 : CATGAACAGCGTCGAGGAGCGTCGAAGGAGGTTCACGTTGTTCGGATCAGTTTTCG : 1685884 45 : laIleLeuPheAlaLeuTrpIleGlnThrMetAspIleTyrTyrSerTrpGlyAsn : 62 ||:!!! !!:!!.!:!!!:::!:.!...!! |||||| !:!!|||!::! !:!! laLeuSerTyrGlyValTyrValAsnValAsnAspIleLeuHisSerPheAspAsp 1685885 : CCCTTTCTTACGGCGTTTACGTGAACGTAAACGATATTCTTCACAGCTTCGATGAT : 1685938 63 : LeuSer >>>> Target Intron 1 >>>> AlaCysIlePheSerThrSer : 71 |||||| 1431 bp !||||||||| !|||!!! LeuSer++ ++HisCysIlePheLeuThrCys 1685939 : CTGAGCgt.........................agcATTGCATCTTTCTGACTTGC : 1687396 72 : AsnThrLeuSerLeuIleLeuProLeuLeuLysIlePheIleLeuLeuSerHisLy : 90 |||||||||!!!:!!:!!||| !!:!!!!!||||||||||||||| !!:!|||!: AsnThrLeuCysIleLeuLeuAlaIlePheLysIlePheIleLeuSerAsnHisAr 1687397 : AACACACTGTGCATTCTTCTGGCGATATTTAAGATTTTCATACTAAGCAATCACAG : 1687453 91 : sGluGluPhePheArgLeuIleValTyrMetGlnArgAsnPheLeuArgGlyAsnT : 109 ! !|||||| ..!:!!:!!:!!||| !|||!:!:!!|||! !!.!! !|||| gThrGluPheLysGluIleValLeuTyrAlaGlnLysHisPheTrpHisAspAsnT 1687454 : AACGGAATTCAAGGAGATAGTCTTGTACGCGCAGAAGCATTTTTGGCATGATAATT : 1687510 110 : yrAspAspTyrGluArgGluValValPheGlyCysLysArgLysCysThrPhePhe : 127 ||..! ! ! ||||||! !:!! ! ! !|||:!!||| |||! !.!.!:: yrSerLysGluGluArgValLeuTyrGlyAspCysGlnArgPheCysLysLeuTrp 1687511 : ACAGCAAAGAGGAGAGGGTGCTTTATGGAGATTGCCAGAGGTTCTGCAAACTATGG : 1687564 128 : IleCysPhePheThrPhePheThrMetAlaThrIleValSerTyrIleAlaSerPr : 146 :!! .!..!. !|||.!!|||...|||:!!:!!|||! !|||.!!!.!!!!|| ValIleLeuIleCysPheLeuThrGlnAlaSerLeuValPheTyrPheValThrPr 1687565 : GTCATACTAATATGTTTCCTTACGCAAGCCTCTTTAGTGTTCTACTTTGTCACACC : 1687621 147 : oIleVal{G} >>>> Target Intron 2 >>>> {ly}LeuAlaAsnIleG : 154 |:!!..!{!} 418 bp { !} ||||||!!:. oLeuThr{V}++ --{al}ProAlaAsnMetS 1687622 : ACTCACT{G}gt.........................gt{TT}CCAGCAAATATGA : 1688063 155 : lyLysAsnGluSerAspArgValLeuProPheAsnMetTrpValAsnLeuProLeu : 172 !!::!|||:!!|||||||||||||||||||||!!.|||||||||:!!! !|||||| erArgAsnLysSerAspArgValLeuProPheLysMetTrpValAspTrpProLeu 1688064 : GCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTGGGTCGATTGGCCGCTA : 1688117 173 : SerMetThrProTyrPheGluIleThrPheThrLeuGlnThr{Le} >>>> Tar : 187 ||| |||||||||!:!|||:!:! !||||||!!!|||..!{! } SerAspThrProTyrTyrGluLeuMetPheThrPheGlnVal{Se}++ 1688118 : TCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAGGTA{TC}gt........ : 1688166 188 : get Intron 3 >>>> {u}SerLeuTyrGlnIleGlyValSerTyrPheCysP : 199 1767 bp {!} ...::: ...|||||| . ++{r}PhePhePheAlaGluLeuArgLysTyrPhe***M 1688167 : .................ag{t}ttttttttcgcggagctacgcaaatatttttgaa : 1689965 200 : heAspAsnPheLeuCysIleMetAsnLeu : 208 .. !..!||||||||||||:!:|||:!! etIleArgPheLeuCysIleLeuAsnVal 1689966 : tgatTCGCTTTTTGTGCATCCTTAACGTA : 1689994 vulgar: AfOr91_1 6 208 . KQ414915.1 1685772 1689994 + 371 M 58 174 5 0 2 I 0 1427 3 0 2 M 84 252 S 0 1 5 0 2 I 0 414 3 0 2 S 1 2 M 37 111 S 0 2 5 0 2 I 0 1763 3 0 2 S 1 1 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1685773 1689994 371 + . gene_id 6 ; sequence AfOr91_1 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1685773 1685946 . + . KQ414915.1 exonerate:protein2genome:local exon 1685773 1685946 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1685947 1685948 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1685947 1687377 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1687376 1687377 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1687378 1687630 . + . KQ414915.1 exonerate:protein2genome:local exon 1687378 1687630 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1687631 1687632 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1687631 1688048 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1688047 1688048 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local cds 1688049 1688163 . + . KQ414915.1 exonerate:protein2genome:local exon 1688049 1688163 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688164 1688165 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688164 1689930 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1689929 1689930 . + . intron_id 2 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1689931 1689994 . + . KQ414915.1 exonerate:protein2genome:local exon 1689931 1689994 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1685773 1689994 371 + . alignment_id 6 ; Query AfOr91_1 ; Align 1685773 7 174 ; Align 1687378 65 252 ; Align 1688051 150 111 ; Align 1689932 188 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_1 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 363 Query range: 244 -> 402 Target range: 1688490 -> 1690076 245 : PheSerSerLysCysTyrThrThrPheLysLysCysIleArgGlnHisGlnThrLe : 263 !:!!!!!:!||||||||||||! !.!.! ! ! ||||||!:!.!.||||||:!!|| TyrThrAsnLysCysTyrThrLysLeuIleAspCysIleLysAsnHisGlnSerLe 1688491 : TACACGAACAAATGTTACACCAAGCTGATAGATTGCATCAAAAATCATCAGTCGTT : 1688545 264 : uIleThrTyrCysArgLysLeuGluAlaValPheAsnLeuIleValLeuGluGlnV : 282 |||| !!:!||| !||||||||| !|||!:!!..|||! !:!!|||! !!.: uIleGluPheCysValLysLeuGluAsnValTyrThrLeuThrIleLeuGlyHisI 1688546 : GATCGAGTTCTGCGTGAAACTCGAGAACGTGTACACGTTGACTATACTCGGCCACA : 1688602 283 : alLeuMetPheSerLeuLeuIleCysLeuAspGlyTyrGlnIleLeuMet >>>> : 299 !!:!!:!:||||||||||||!!:|||!!!||| !|||:!!:!!:!!:!! leValValPheSerLeuLeuMetCysPheAspThrTyrGluValValLeu++ 1688603 : TAGTGGTCTTCAGCTTGTTGATGTGCTTCGACACGTACGAGGTAGTTCTGgt.... : 1688655 300 : Target Intron 1 >>>> AlaAspGlyAspIleLysThrArgLeuIlePhe : 309 816 bp ||| ! ! ! !! !! !||||||||||||||| ++AlaLysValProThrThrThrArgLeuIlePhe 1688656 : .....................agGCAAAGGTACCTACCACGACGCGCCTCATATTC : 1689499 310 : SerLeuHisValLeuAlaCysLeuCysGlnLeuLeuMetPheSerTyrSerCysAs : 328 ! !!!!|||:!!:!!!.! !!!!! !!..::::::...|||:::|||||||||! LeuPheHisMetIleGlySerPheIleHisIleIlePhePheThrTyrSerCysGl 1689500 : TTATTCCACATGATCGGTAGCTTCATCCacataattttcttcacgtACAGTTGTGG : 1689556 329 : pCysIleIleArgGluSerValAsnValAlaThrAlaAlaTyrGlyGlyProTrpT : 347 ! !!:!:|||..!||||||:!!:!!:!!|||||||||.!!|||!.!||| !|||| yGlyLeuIleGluGluSerMetAspIleAlaThrAlaThrTyrAlaGlyMetTrpT 1689557 : TGGTTTGATAGAAGAGAGTATGGATATTGCAACAGCAACGTATGCAGGAATGTGGA : 1689613 348 : hrLeuLeuProMetThrThrAsnGlyLysMetMetArgLysAspLeuIleValVal : 365 ||:!!|||||||||!.!! ! !|||||||||!!:||| !:!!:!!! :!!:!! hrValLeuProMetAsnLysValGlyLysMetIleArgGlyAsnMetLysLeuMet 1689614 : CGGTTTTGCCAATGAATAAAGTTGGCAAAATGATACGAGGAAATATGAAGTTAATG : 1689667 366 : IleMetArgSerSerIleProCysCysLeuThr<->GlyLysPhePheIleValSe : 383 ! !:!:||||||! ! !|||||||||:!!||| ||| !|||||| !||||| ThrValArgSerLeuGlnProCysCysIleThrAlaGlyGlyPhePheProValSe 1689668 : ACCGTAAGGTCGTTGCAACCGTGTTGCATAACTGCTGGTGGATTCTTTCCTGTCTC : 1689724 384 : rLeuGluThrTyrThrSer >>>> Target Intron 2 >>>> ValLeuSe : 392 ||||:!!||| !|||:!! 293 bp :!!:!!|| rLeuLysThrAlaThrAla++ ++LeuMetSe 1689725 : CTTGAAAACTGCTACCGCGgt.........................agCTAATGAG : 1690044 393 : rThrAlaAlaSerTyrPheThrLeuLeuArg : 402 |:!!.!! !|||||||||||||||:!!||| rSerThrMetSerTyrPheThrLeuMetArg 1690045 : TTCCACAATGTCGTATTTCACGCTCATGAGA : 1690076 vulgar: AfOr91_1 244 402 . KQ414915.1 1688490 1690076 + 363 M 54 162 5 0 2 I 0 812 3 0 2 M 78 234 G 0 3 M 13 39 5 0 2 I 0 289 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688491 1690076 363 + . gene_id 7 ; sequence AfOr91_1 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688491 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688491 1688652 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689744 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690076 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690076 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688491 1690076 363 + . alignment_id 7 ; Query AfOr91_1 ; Align 1688491 245 162 ; Align 1689469 299 234 ; Align 1689706 377 39 ; Align 1690038 390 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_1 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 216 Query range: 151 -> 224 Target range: 1681725 -> 1682067 152 : AsnIleGlyLysAsnGluSerAspArgValLeuProPheAsnMetTrpVal<->As : 169 ||||||||||||!:!!!:..!!!:|||:!!||||||||| .!. ! ||| || AsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAs 1681726 : AACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAA : 1681780 170 : nLeuProLeuSerMetThrProTyrPheGluIleThrPheThrLeuGln >>>> : 186 ||||||| !|||:!!|||||||||:::|||||| |||..!:!!:!! nLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681781 : CTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt..... : 1681833 187 : Target Intron 1 >>>> ThrLeuSerLeuTyrGlnIleGlyValSerTyrP : 197 120 bp |||||||||:!! !!. |||:!!!!!!:!! ++ThrLeuSerValValHisSerGlyIleCysPheC 1681834 : ....................agACATTATCTGTGGTGCATTCGGGAATTTGTTTCT : 1681984 198 : heCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGlnPheLys : 215 !||||||||||||||||||||||||:!!!:!:!!||||||!.!|||||||||||| ysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLys 1681985 : GTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAG : 1682038 216 : ValLeuGlnTyrArgIleSerAsnIle : 224 :!!|||||| !!!:!:!!..!!..:!! IleLeuGlnAsnLysLeuGlnThrVal 1682039 : ATTTTACAAAACAAACTCCAAACAGTA : 1682067 vulgar: AfOr91_1 151 224 . KQ414915.1 1681725 1682067 + 216 M 17 51 G 0 3 M 17 51 5 0 2 I 0 116 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681726 1682067 216 + . gene_id 8 ; sequence AfOr91_1 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681726 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681726 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682067 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682067 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681726 1682067 216 + . alignment_id 8 ; Query AfOr91_1 ; Align 1681726 152 51 ; Align 1681780 169 51 ; Align 1681951 186 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_1 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 252 -> 391 Target range: 1677752 -> 1678746 253 : PheLysLysCysIleArgGlnHisGlnThrLeuIleThrTyrCysArgLysLeuGl : 271 |||:::||||||:!:|||!:!||| ! !|||||| !||| ..!:::|||.. PheGluLysCysLeuArgArgHisTyrLeuLeuIleAspTyrValGluGluLeuAs 1677753 : ttcgagaaatgcTTGCGTCGACACTATTTGCTCATTGACTACGTAGAGgaattgaa : 1677807 272 : uAlaValPheAsnLeuIleValLeuGluGlnValLeuMetPheSerLeuLeuIleC : 290 . :::|||!!.! !! !:!!||| !|||:!!:!!! ! ||||||||||||| nAsnLeuPheLysTyrThrLeuLeuLeuGlnMetMetThrSerSerLeuLeuIleC 1677808 : taatttgttCAAATACACCCTTCTGTTACAGATGATGACCTCGAGTTTGTTAATCT : 1677864 291 : ysLeuAspGlyTyrGlnIleLeuMet >>>> Target Intron 1 >>>> A : 299 ||:!!..!||||||:!! !|||:!! 580 bp ysMetSerGlyTyrGluCysLeuVal++ ++T 1677865 : GTATGTCTGGTTACGAATGTTTAGTGgt.........................agT : 1678471 300 : laAspGlyAspIleLysThrArgLeuIlePheSerLeuHisValLeuAlaCysLeu : 317 !.!.!.!..!:!: !! !|||:!!:!!!:!! !:!!:!!:!!:!!|||! :!! yrGlnAlaSerLeuLeuLysArgMetValTyrIleMetTyrMetValAlaSerVal 1678472 : ACCAGGCATCCTTGCTAAAACGCATGGTCTACATCATGTACATGGTTGCCTCAGTG : 1678525 318 : CysGlnLeuLeuMetPheSerTyrSerCysAspCysIleIleArgGluSerValAs : 336 ! :!!|||! !:!!.!. ! !!! ||| :!:! !! !.!.||| ! SerGluLeuTrpLeuIleValArgThrValAspGluLeuThrThrHisSerLysAl 1678526 : TCAGAATTATGGTTGATAGTCCGAACCGTAGACGAACTGACCACTCATAGCAAAGC : 1678582 337 : nValAlaThrAlaAlaTyrGlyGlyProTrpThrLeuLeuProMetThrThrAsnG : 355 :!!!.! !||| !|||..!..! !||| !:!:::: ... aIleGlyAspAlaMetTyrSerSerAspTrpGlyValIle---PheGlyLysLeuG 1678583 : GATCGGCGATGCGATGTATTCCTCGGATTGGGGAGTgatc---tttggaaaattgg : 1678636 356 : lyLysMetMetArgLysAspLeuIleValValIleMetArgSerSerIleProCys : 373 ||| :::::: |||! ..!:!!:!!!!:||||||! ! !!||| luLysLysLeuLysPheAlaLeuThrThrMetValIleArgSerIleGluThrCys 1678637 : agaagaaattaaaatttgcctTGACGACGATGGTTATCAGATCGATCGAGACGTGT : 1678690 374 : CysLeuThrGlyLysPhePheIleValSerLeuGluThrTyrThrSerValLeu : 391 ! !:!!! !!.! |||||| |||||| !||||||!:!|||||||||:!! SerMetLysAlaGlyPhePheAlaValSerSerGluThrPheThrSerValIle 1678691 : TCTATGAAAGCTGGCTTCTTTGCGGTCTCCAGTGAGACGTTTACATCGGTAATT : 1678746 vulgar: AfOr91_1 252 391 . KQ414915.1 1677752 1678746 + 165 M 46 138 5 0 2 I 0 576 3 0 2 M 51 153 G 1 0 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1677753 1678746 165 + . gene_id 9 ; sequence AfOr91_1 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1677753 1677890 . + . KQ414915.1 exonerate:protein2genome:local exon 1677753 1677890 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1677891 1677892 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1677891 1678470 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1678469 1678470 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1678471 1678746 . + . KQ414915.1 exonerate:protein2genome:local exon 1678471 1678746 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1677753 1678746 165 + . alignment_id 9 ; Query AfOr91_1 ; Align 1677753 253 138 ; Align 1678471 299 153 ; Align 1678624 351 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_1 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 4 -> 64 Target range: 1692088 -> 1692268 5 : GluSerAspIleSerValArgLeuThrSerIlePheMetLysLeuValGlyLeuTr : 23 ...!.!|||||||||:!! !! !:!!! !.!!!!.||||||:!!||||||||||| SerLysAspIleSerIleValTrpSerPhePheLeuMetLysIleValGlyLeuTr 1692089 : AGTAAAGATATCTCGATCGTTTGGTCGTTCTTTTTGATGAAAATCGTAGGTCTGTG : 1692143 24 : pMetAlaAlaAsnGlnTyrGluGlnArgMetArgAsnAlaMetIleThrTyrAsnV : 42 |:!:||||||:!!:!! !||||||||| !|||||| ! !:!:! !|||!..: pLeuAlaAlaAspGluAlaGluGlnArgArgArgAsnPheAlaLeuIleTyrThrL 1692144 : GCTAGCCGCCGACGAGGCTGAACAACGTCGGAGAAATTTCGCGCTGATTTACACGC : 1692200 43 : alValAlaIleLeuPheAlaLeuTrpIleGlnThrMetAspIleTyrTyrSerTrp : 60 !! !||||||!!!.!!|||! !!! ||| !! !! |||||||||||||||||| euAsnAlaIlePheIleAlaSerCysIleAlaMetArgAspIleTyrTyrSerTrp 1692201 : TGAACGCGATTTTTATCGCTTCGTGTATAGCAATGAGAGATATATACTATTCCTGG : 1692254 61 : GlyAsnLeuSer : 64 ||||||:!!!:! GlyAsnValAsn 1692255 : GGAAACGTGAAC : 1692268 vulgar: AfOr91_1 4 64 . KQ414915.1 1692088 1692268 + 149 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1692089 1692268 149 + . gene_id 10 ; sequence AfOr91_1 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1692089 1692268 . + . KQ414915.1 exonerate:protein2genome:local exon 1692089 1692268 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1692089 1692268 149 + . alignment_id 10 ; Query AfOr91_1 ; Align 1692089 5 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr94 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 967 Query range: 0 -> 407 Target range: 1704894 -> 1709261 1 : MetSerLeuLysHisArgArgAspValSerPheSerLeuAlaThrPhePheLeuAr : 19 |||!!!! !||| ! !.!|||||||||||| ! |||:!!.!!.!!|||!:!|||!: MetThrSerLysLysAsnArgAspValSerValSerValThrAlaPheTyrLeuLy 1704895 : ATGACTTCGAAGAAGAACAGGGACGTATCAGTGAGCGTCACAGCTTTCTACTTGAA : 1704949 20 : gValValGlyPheTrpLeuThrSerSerProLeuGluGluTrpLeuGlyAsnValT : 38 !:!!:!!||||||||||||.!!..!!!! ! !|||:!! ! ! ! !!!!. !!. sIleIleGlyPheTrpLeuAlaAspThrTyrGluGluLysArgArgArgLysPheA 1704950 : AATCATCGGCTTCTGGTTAGCTGACACTTACGAGGAGAAACGTCGAAGAAAGTTCG : 1705006 39 : hrValMetTyrSerIleIleThrIleValPheSerMetTrpValGlnThrArgGly : 56 !! !! ! !!!!|||:!!! !:!!:!!! !:!!:!! !:!!:!!..!|||! ! laGlnAsnCysThrIleLeuMetLeuMetCysAlaValLeuLeuGluValArgAsp 1705007 : CGCAGAATTGCACGATACTTATGCTTATGTGCGCTGTGCTGCTTGAGGTGAGGGAT : 1705060 57 : LeuTyrPheSerTrpGlyAspPheGly >>>> Target Intron 1 >>>> : 66 :!!||| !! !||||||||||||||| 1391 bp IleTyrHisIleTrpGlyAspPheGly++ ++ 1705061 : ATCTATCACATCTGGGGAGATTTCGGCgt.........................ag : 1706479 67 : ValCysThrPheIleAlaCysAsnSerLeuGlyLeuIleMetAspLeuLeuLysVa : 84 !.! !..!!:!:!! !||||||! !||| !:!! !!!:..!|||!!!|||:! AlaValValTyrValMetCysAsnIleLeuThrValGlyIleSerLeuPheLysIl 1706480 : GCCGTTGTTTACGTAATGTGCAACATTCTAACAGTGGGCATAAGTTTGTTCAAGAT : 1706535 85 : lPheValValPheIleHisLysLysLysPheLeuGlyLeuIleAlaTyrMetGlnL : 103 !!!.||| !.!.! |||:::||||||||| |||||| ||| ::!! eLeuValSerMetArgSerLysGluLysPheLeuGluLeuIleLysTyrAlaArgT 1706536 : CTTGGTCTCGATGAGGagtaaggaaaaatttttggaattaattaaatacgcCAGAA : 1706592 104 : ysAsnPheTrpHisPheAspTyrAspGlnTyrGluAsnSerLeuIleAlaAspAla : 121 !||||||||||||! |||||||||..! ! |||.!.! !:!!:!: !!!:..! hrAsnPheTrpHisSerAspTyrAspSerGlnGluGlnMetIleValAsnGluCys 1706593 : CGAATTTCTGGCACTCGGATTATGACTCGCAGGAGCAAATGATTGTGAACGAGTGT : 1706646 122 : LysGlnMetCysValTyrPheValCysValPheSerPhePheSerGlnSerThrVa : 140 |||!:: |||..!!:!.!!:!!|||||||||!:!||||||:!!.!..!!||||| LysArgSerCysThrPheLeuIleCysValPheAsnPhePheAlaAsnGlyThrVa 1706647 : AAACGTTCTTGTACATTCCTCATATGCGTGTTTAATTTCTTCGCTAATGGGACAGT : 1706703 141 : lPheSerTyrMetPheMetProMetIle{S} >>>> Target Intron 2 >> : 150 |! !.!!|||!!:.!!! !|||!!::!!{.} 266 bp lSerGlyTyrIleIleArgProIleVal{G}++ 1706704 : GTCTGGATACATAATCAGGCCAATTGTA{G}gt....................... : 1706736 151 : >> {er}AsnIleGlyLysAsnGluSerAspArgMetLeuIlePheAsnMetTrp : 166 {.!}!::||||||||||||||||||||||||!!:|||||| !!|||.!.||| ++{lu}SerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrp 1706737 : ..ag{AA}AgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGG : 1707047 167 : LeuAspLeuProLeuSerMetSerProTyrPheGluIleThrTyrValIleGln : 185 :!!|||!!!||| !!!!|||!!!||||||!:!|||||| !!:!..! ||| IleAspPheProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707048 : ATTGACTTTCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt : 1707104 186 : >>>> Target Intron 3 >>>> AlaLeuCysLeuTyrGlnValGlyIleCy : 194 276 bp !.!!!! !:!! ! ||| !!||| ! ++ValPheIleValMetTyrValCysIleSe 1707105 : .........................agGTTTTTATCGTAATGTACGTTTGCATAAG : 1707407 195 : sTyrLeuCysValAspAsnMetPheCysIleMetCysLeuHisLeuAlaSerGlnP : 213 !|||||||||:!!||||||.!..!.|||!!:!!: !|||||| !|||!!!|||| rTyrLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnP 1707408 : CTACCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAAT : 1707464 214 : heArgIleLeuGlnTyrArgLeuValAsnLeuSerSerValGluAsnLysGluGlu : 231 ||||||||||||||||||||||| !|||:!!!!!.!!!.!.!..!.:::...::: heArgIleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAsp 1707465 : TTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcgat : 1707518 232 : ValAspAsnGluGluAsnMetAspSerSerGlyArgCysTyrAlaIleLeuLysAs : 250 :::::::::... !..!!:!|||! !..!|||||||||! !!!||||| LysIleSerLysLysThrProSerAsnSerAspGluCysTyrAlaLysPheLysAs 1707519 : aaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAAA : 1707575 251 : nCysIleArgGlnHisGlnAlaLeuIleGlnPheSerIleThrLeuGluGluIleP : 269 |||||||!:!||||||||||||||||||:!!!:!!!!! ! !|||:!!|||:!:| nCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluValP 1707576 : TTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGGTGT : 1707632 270 : heThrIleIleThrLeuGlyGlnValLeuIlePheSerThrLeuIleCysPheVal : 287 || !:!!.!!..!|||!.!|||||||||:!!|||||| !|||!!:|||.!!! ! heGlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAsp 1707633 : TCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGAT : 1707686 288 : GlyTyrGlnValLeuLeu >>>> Target Intron 4 >>>> ValAsnLeu : 296 |||||| :!!:!!:!! 457 bp ! !:!! ! GlyTyr---LeuValMet++ ++GluAspThr 1707687 : GGATAT---TTGGTGATGgt.........................agGAAGATACT : 1708167 297 : ThrPheSerTrpArgIleSerPheLeuCysPheLeuIleThrAsnMetCysGlnLe : 315 !!.!!! ! !|||:!!!!!||||||! ! !|||! ! !:!!|||||||| ProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLe 1708168 : CCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACT : 1708224 316 : uTrpMetPheThrTyrSerCysAspCysMetThrArgGluSerValAsnValAlaS : 334 |! !||||||||||||||||||||||||:!!! !|||||||||:!!|||||||||! uLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaA 1708225 : GTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCA : 1708281 335 : erAlaValTyrSerIleProTrpThrArgIleProMetAspLysPheGlyLysMet : 352 :!|||:!!|||..! ! !!|||! !!.!:!:|||||||||!:!! !|||::!||| snAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMet 1708282 : ATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATG : 1708335 353 : IleArgLysAspLeuGlnPheValValValArgSerArgArgAlaCysSerLeuTh : 371 :!:|||||||||||| !||||||:!!! !||||||||| ! !!|||!!!||||| LeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuTh 1708336 : CTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCAC : 1708392 372 : rGlyCysGlyPhePheAlaIleSerLeuGluThrTyrThrLys >>>> Target : 386 |!.!|||||||||||| !!:!:||||||||||||||||||..! 7 rAlaCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708393 : TGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt........... : 1708439 387 : Intron 5 >>>> IleMetSerThrAlaMetSerTyrPheThrIleLeuLysG : 399 59 bp |||:!:||||||||| !||||||||||||:!:|||::!: ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgL 1708440 : ..............agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTACGAA : 1709235 400 : lnArgThrIleGluIleGluAsnThr : 407 !!!:! ! !||||||! .!.||| ysGlnGluAlaGluIleValGluThr 1709236 : AACAAGAAGCAGAAATAGTTGAAACA : 1709261 vulgar: AfOr94 0 407 . KQ414915.1 1704894 1709261 + 967 M 65 195 5 0 2 I 0 1387 3 0 2 M 84 252 S 0 1 5 0 2 I 0 262 3 0 2 S 1 2 M 34 102 5 0 2 I 0 272 3 0 2 M 105 315 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1704895 1709261 967 + . gene_id 1 ; sequence AfOr94 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1704895 1705089 . + . KQ414915.1 exonerate:protein2genome:local exon 1704895 1705089 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1705090 1705091 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1705090 1706480 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1706479 1706480 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1706481 1706733 . + . KQ414915.1 exonerate:protein2genome:local exon 1706481 1706733 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1706734 1706735 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1706734 1706999 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1706998 1706999 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707000 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707000 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 5 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 5 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 4 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709261 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709261 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1704895 1709261 967 + . alignment_id 1 ; Query AfOr94 ; Align 1704895 1 195 ; Align 1706481 66 252 ; Align 1707002 151 102 ; Align 1707380 185 315 ; Align 1707695 291 9 ; Align 1708161 294 276 ; Align 1709196 386 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr94 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 834 Query range: 63 -> 404 Target range: 1693994 -> 1696269 64 : PheGlyValCysThrPheIleAlaCysAsnSerLeuGlyLeuIleMetAspLeuLe : 82 ||| !! !|||! !!:!:!!!.!||||||! !||| !||| !!:! !!!!!! PheGlnAspCysIleTyrValGlyCysAsnIleLeuTyrLeuAlaIleValPhePh 1693995 : TTCCAGGACTGCATTTACGTCGGGTGCAACATTTTATACCTAGCGATCGTTTTCTT : 1694049 83 : uLysValPheValValPheIleHisLysLysLysPheLeuGlyLeuIleAlaTyrM : 101 !|||:!!.!!|||:!!!:!! |||!:!! !:!!|||! !||||||||| !!:!! eLysIleLeuValLeuTyrLysHisArgIleGluPheTyrGlyLeuIleArgPheT 1694050 : CAAGATCCTCGTTTTGTACAAGCACAGAATAGAATTCTACGGGTTAATCAGGTTCA : 1694106 102 : etGlnLysAsnPheTrpHisPheAspTyrAspGlnTyrGluAsnSerLeuIleAla : 119 !|||:!!!!.||||||||||||||||||:!!..! |||!!.! !:!!:!!:!! hrGlnGluLysPheTrpHisPheAspTyrAsnSerArgGluLysLeuIleLeuSer 1694107 : CGCAAGAGAAATTCTGGCATTTCGACTATAATTCACGGGAGAAGTTAATTTTATCC : 1694160 120 : AspAlaLysGlnMetCysValTyrPheValCysValPheSerPhePheSerGlnSe : 138 !!:..!|||:!!!!:|||..! !|||:!! !!.!|||||||||! !!!!|||.! GluCysLysLysIleCysThrValPheIleValAlaPheSerPheCysThrGlnGl 1694161 : GAGTGCAAGAAGATATGTACCGTTTTCATCGTTGCCTTCAGCTTCTGTACTCAGGG : 1694217 139 : rThrValPheSerTyrMetPheMetProMetIle{S} >>>> Target Intro : 150 !||| ! !.!!|||:!: ! ! |||!!::!!{:} 100 bp yThrCysAlaGlyTyrValValThrProIleLeu{A}++ 1694218 : CACGTGTGCTGGTTACGTAGTGACACCTATTTTA{g}gt................. : 1694256 151 : n 1 >>>> {er}AsnIleGlyLysAsnGluSerAspArgMetLeuIlePheAsn : 164 {!!}|||:!!|||||||||:!!|||!!:||||||||| !|||||| ++{la}AsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsn 1694257 : ........ag{CA}AATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAAC : 1694395 165 : MetTrpLeuAspLeuProLeuSerMetSerProTyrPheGluIleThrTyrValIl : 183 ||||||:!!|||!!!||| !.!!:!!|||||||||!:!|||:!! !!:!:!!|| MetTrpValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIl 1694396 : ATGTGGGTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCAT : 1694452 184 : eGln >>>> Target Intron 2 >>>> AlaLeuCysLeuTyrGlnValGl : 192 |||| 409 bp .!!||||||:!!|||!!.||||| eGln++ ++ThrLeuCysValTyrHisValGl 1694453 : ACAGgt.........................agACACTTTGCGTGTACCATGTCGG : 1694888 193 : yIleCysTyrLeuCysValAspAsnMetPheCysIleMetCysLeuHisLeuAlaS : 211 ||||||||||:!!||| !!||||||!!:.!! !!:!!:!! !||||||:!!|||! yIleCysTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaT 1694889 : TATATGTTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCA : 1694945 212 : erGlnPheArgIleLeuGlnTyrArgLeuValAsnLeuSerSerValGluAsnLys : 229 !!||||||||||||||||||||||||!!!:!!|||||||||!:!||| .!.||| hrGlnPheArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLys 1694946 : CTCAATTTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAG : 1694999 230 : GluGluValAspAsnGluGluAsnMetAspSerSerGly<-><-><->ArgCysTy : 245 :!! !! !! !...||| ...::: ! !!!!..! ! !!|| GlnThrAspGlyArgGluLeuGluIleGlyTyrThrAsnPheThrValAspSerTy 1695000 : CAAACAGACGGTcgagaattggaaattggtTACACAAATTTCACAGTCGATAGTTA : 1695056 246 : rAlaIleLeuLysAsnCysIleArgGlnHisGlnAlaLeuIleGlnPheSerIleT : 264 | ! !||||||!:!|||:!:!:! ! ||||||||||||! ! !:!!!!! !! rLeuGlnLeuLysSerCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysL 1695057 : CTTACAATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAA : 1695113 265 : hrLeuGluGluIlePheThrIleIleThrLeuGlyGlnValLeuIlePheSerThr : 282 !||||||.!.||||||:!!:!::!!..!|||||||||||||||.!!.!.:!!! ! ysLeuGluAsnIlePheSerLeuLeuValLeuGlyGlnValLeuPheLeuAlaMet 1695114 : AGTTGGAGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATG : 1695167 283 : LeuIleCysPheValGlyTyrGlnValLeuLeu >>>> Target Intron 3 : 294 :!!:!!|||.!!||||||||||||:!!!!!||| 415 bp ValLeuCysLeuValGlyTyrGlnLeuPheLeu++ 1695168 : GTACTTTGCCTCGTGGGATATCAGCTATTTCTGgt..................... : 1695205 295 : >>>> ValAsnLeuThrPheSerTrpArgIleSerPheLeuCysPheLeuIleTh : 310 ..!:!!! ! !! !||| ! !.!:!!.!!!!.:!! ! !||| ! ++ThrAspSerProProSerArgAsnValGlyLeuValLeuAsnLeuAlaGl 1695206 : ....agACAGACTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGG : 1695666 311 : rAsnMetCysGlnLeuTrpMetPheThrTyrSerCysAspCysMetThrArgGluS : 329 !!.!:!!|||||||||!::||||||||||||||||||||| !!:!!|||||||||| yThrLeuCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGluS 1695667 : CACTTTGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGA : 1695723 330 : erValAsnValAlaSerAlaValTyrSerIleProTrpThrArgIleProMetAsp : 347 ||:!!:!!|||::!!!!||||||!:!:!!! !||||||.!!!.!:!:||||||||| erMetAspValSerArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAsp 1695724 : GCATGGACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGAT : 1695777 348 : LysPheGlyLysMetIleArgLysAspLeuGlnPheValValValArgSerArgAr : 366 !:! !||||||! :!:|||:!!..!:!!! !.!.|||:!!:!!||||||!.!|| ArgAsnGlyLysSerValArgGlnSerMetLeuMetValIleMetArgSerAsnAr 1695778 : AGAAATGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAG : 1695834 367 : gAlaCysSerLeuThrGlyCysGlyPhePheAlaIleSerLeuGluThrTyrThrL : 385 |..!|||!!!||||||!.! !!||||||||| !!:!!|||||||||||||||||| gCysCysCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrG 1695835 : GTGTTGCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTG : 1695891 386 : ys >>>> Target Intron 4 >>>> IleMetSerThrAlaMetSerTyrP : 394 ! 319 bp :!!:!:||||||||||||||||||| ly++ ++ValLeuSerThrAlaMetSerTyrP 1695892 : GGgt.........................agGTCCTCAGCACTGCAATGTCATACT : 1696237 395 : heThrIleLeuLysGlnArgThrIleGluIle : 404 |||||:!!|||!:!||| !|||!!:...||| heThrLeuLeuArgGlnSerThrMetSerIle 1696238 : TTACACTACTGAGACAATCGACTATGAGCATA : 1696269 vulgar: AfOr94 63 404 . KQ414915.1 1693994 1696269 + 834 M 86 258 S 0 1 5 0 2 I 0 96 3 0 2 S 1 2 M 34 102 5 0 2 I 0 405 3 0 2 M 58 174 G 0 9 M 51 153 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1693995 1696269 834 + . gene_id 2 ; sequence AfOr94 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1693995 1694253 . + . KQ414915.1 exonerate:protein2genome:local exon 1693995 1694253 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694254 1694255 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1694254 1694353 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694352 1694353 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694354 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694354 1694457 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 3 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696269 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696269 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1693995 1696269 834 + . alignment_id 2 ; Query AfOr94 ; Align 1693995 64 258 ; Align 1694356 151 102 ; Align 1694867 185 174 ; Align 1695050 243 153 ; Align 1695618 294 276 ; Align 1696213 386 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr94 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 630 Query range: 66 -> 296 Target range: 1698550 -> 1699980 67 : CysThrPheIleAlaCysAsnSerLeuGlyLeuIleMetAspLeuLeuLysValPh : 85 |||.!!!:!! !|||||||||! !||| !!|||||||||! |||||||||:!!|| CysAlaTyrThrAlaCysAsnIleLeuCysLeuIleMetValLeuLeuLysLeuPh 1698551 : TGTGCTTACACCGCTTGTAACATTCTCTGCCTGATTATGGTACTGTTAAAGCTGTT : 1698605 86 : eValValPheIleHisLysLysLysPheLeuGlyLeuIleAlaTyrMetGlnLysA : 104 ||||||||||||||||!:!|||:!!|||:!!! !|||:::...|||||| |||| eValValPheIleHisArgLysGluPheIleGluLeuLeuValTyrMetTyrLysA 1698606 : CGTTGTATTCATACACAGGAAAGAATTCATCGAACTgcttgtatatatgtacaaaa : 1698662 105 : snPheTrpHisPheAspTyrAspGlnTyrGluAsnSerLeuIleAlaAspAlaLys : 122 |||||||||||.!!:!!|||||| !!||| !|||:!: !|||..!!:! snPheTrpHisLeuAsnTyrAspCysAsnGluLeuLeuLeuLeuGlnAspCysArg 1698663 : atttttggcACCTCAATTACGATTGCAACGAACTACTACTGCTGCAAGACTGCAGA : 1698716 123 : GlnMetCysValTyrPheValCysValPheSerPhePheSerGlnSerThrValPh : 141 ::!!!: !!..! ! !:!! :!!.!!!:!|||! !:!!|||.!!|||:!! ! ArgIleSerThrIleCysIleThrLeuIleAsnPheCysAlaGlnGlyThrIleVa 1698717 : AGAATTAGCACTATATGTATCACGTTGATTAACTTCTGTGCTCAAGGCACAATTGT : 1698773 142 : eSerTyrMetPheMetProMetIle{S} >>>> Target Intron 1 >>>> : 150 !||||||:!!.!.! |||!!:|||{:} 232 bp lSerTyrValLeuThrProIleIle{A}++ + 1698774 : CAGCTACGTGCTAACACCTATTATA{G}gt.........................a : 1699031 151 : {er}AsnIleGlyLysAsnGluSerAspArgMetLeuIlePheAsnMetTrpLeu : 167 {!!}|||||||||:::|||...|||||||||:!!||| !||||||||||||:!! +{la}AsnIleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTrpVal 1699032 : g{ca}aatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTGGGTT : 1699083 168 : AspLeuProLeuSerMetSerProTyrPheGluIleThrTyrValIleGln >>> : 185 |||||||||||||||:!!|||||| !:!||||||..!!:!|||:!!||| AspLeuProLeuSerValSerProThrTyrGluIleValPheValLeuGln++ 1699084 : GATTTGCCGCTGTCTGTGTCACCAACGTACGAAATAGTGTTCGTGCTTCAGgt... : 1699139 186 : > Target Intron 2 >>>> AlaLeuCysLeuTyrGlnValGlyIleCysTy : 195 499 bp !.!|||! !||||||!!.||||||:!!||||| ++ValLeuSerLeuTyrHisValGlyValCysTy 1699140 : ......................agGTTCTGTCTTTGTACCACGTTGGTGTATGTTA : 1699666 196 : rLeuCysValAspAsnMetPheCysIleMetCysLeuHisLeuAlaSerGlnPheA : 214 |:!!||| !!||||||:!:!!.|||:!:||| !|||||| !|||!!!||||||| rIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheA 1699667 : CATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTC : 1699723 215 : rgIleLeuGlnTyrArgLeuValAsnLeuSerSerValGluAsnLysGluGluVal : 232 |||||||||||||||||||| !||||||.!!..!..!.!.!..|||:!!! !! ! rgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAsp 1699724 : GTATACTGCAATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGAT : 1699777 233 : AspAsnGluGluAsnMetAspSerSer<-><-><->GlyArgCysTyrAlaIleLe : 248 |||||||||...!:! ! ! !||| ! !!.!|||||| ! !! AspAsnGluSerSerAlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPh 1699778 : GACAATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTT : 1699834 249 : uLysAsnCysIleArgGlnHisGlnAlaLeuIleGlnPheSerIleThrLeuGluG : 267 !|||||||||:!!|||||||||||| !! !||| !!:!!!! !! !|||.!.| eLysAsnCysValArgGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnG 1699835 : TAAAAATTGCGTACGACAACATCAGAATCATATCACGTACTGTCACAGATTGAACG : 1699891 268 : luIlePheThrIleIleThrLeuGlyGlnValLeuIlePheSerThrLeuIleCys : 285 |||||||||||:!!|||..!||||||!!.:!!|||:!!|||||| !||||||||| luIlePheThrValIleValLeuGlyHisIleLeuValPheSerLeuLeuIleCys 1699892 : AAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGT : 1699945 286 : PheValGlyTyrGlnValLeuLeuValAsnLeu : 296 .!.||||||!:!|||||||||:!!! !|||:!! LeuValGlyPheGlnValLeuValGluAsnIle 1699946 : CTGGTTGGATTCCAAGTGCTCGTAGAAAACATC : 1699980 vulgar: AfOr94 66 296 . KQ414915.1 1698550 1699980 + 630 M 83 249 S 0 1 5 0 2 I 0 228 3 0 2 S 1 2 M 34 102 5 0 2 I 0 495 3 0 2 M 57 171 G 0 9 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1698551 1699980 630 + . gene_id 3 ; sequence AfOr94 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1698551 1698800 . + . KQ414915.1 exonerate:protein2genome:local exon 1698551 1698800 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1698801 1698802 . + . intron_id 1 ; splice_site "Gt" KQ414915.1 exonerate:protein2genome:local intron 1698801 1699032 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699031 1699032 . + . intron_id 0 ; splice_site "Ag" KQ414915.1 exonerate:protein2genome:local cds 1699033 1699136 . + . KQ414915.1 exonerate:protein2genome:local exon 1699033 1699136 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699137 1699138 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699137 1699635 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1699634 1699635 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699636 1699980 . + . KQ414915.1 exonerate:protein2genome:local exon 1699636 1699980 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1698551 1699980 630 + . alignment_id 3 ; Query AfOr94 ; Align 1698551 67 249 ; Align 1699035 151 102 ; Align 1699636 185 171 ; Align 1699816 242 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr94 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 494 Query range: 183 -> 392 Target range: 1702013 -> 1703256 184 : GlnAlaLeuCysLeuTyrGlnValGlyIleCysTyrLeuCysValAspAsnMetPh : 202 |||!.!|||! !||||||!!.||||||:!!||||||:!!||| !!||||||:!:!! GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 203 : eCysIleMetCysLeuHisLeuAlaSerGlnPheArgIleLeuGlnTyrArgLeuV : 221 .|||:!:||| !|||||| !|||!!!||||||||||||||||||||||||||| uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 222 : alAsnLeuSerSerValGluAsnLysGluGluValAspAsnGluGluAsnMetAsp : 239 !||||||.!!..!..!.!.!..|||:!!! !! !|||||||||...!:! ! ! erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1702179 240 : SerSer<-><-><->GlyArgCysTyrAlaIleLeuLysAsnCysIleArgGlnHi : 255 !||| ! !!.!|||||| ! !!!|||||||||:!!|||||||| LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHi 1702180 : CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACA : 1702236 256 : sGlnAlaLeuIleGlnPheSerIleThrLeuGluGluIlePheThrIleIleThrL : 274 |||| !! !||| !!:!!!! !! !|||.!.||||||||||||:!!|||..!| sGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValL 1702237 : TCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTAC : 1702293 275 : euGlyGlnValLeuIlePheSerThrLeuIleCysPheValGlyTyrGlnValLeu : 292 |||||!!.:!!|||:!!|||||| !|||||||||.!.||||||!:!||||||||| euGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeu 1702294 : TCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTC : 1702347 293 : LeuValAsnLeuThrPheSerTrpArgIleSerPheLeu{C} >>>> Target : 306 :!!|||..!!!!..! !! |||...||| { } 60 ValValArgPheValGluProLeuIleIleLysPheHis{I}++ 1702348 : GTGGTACGTTTCGTTGAACCTttgattattaaatttcat{a}gt............ : 1702392 307 : Intron 1 >>>> {ys}PheLeuIleThrAsnMetCysGlnLeuTrpMetPheT : 319 7 bp { !} !:!!:!! !!:!:!:|||||||||! !:!:|||| +-{le}HisIleValGlySerLeuCysGlnLeuLeuLeuPheT 1702393 : .............at{TT}CACATAGTCGGTAGTCTATGCCAACTATTGCTATTTA : 1703035 320 : hrTyrSerCysAspCysMetThrArgGluSerValAsnValAlaSerAlaValTyr : 337 |||||||||||||| !!:!!! !..!||||||..!|||:!!!.!!!!|||:!!||| hrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaIleTyr 1703036 : CCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGATATAC : 1703089 338 : SerIleProTrpThrArgIleProMetAspLysPheGlyLysMetIleArgLysAs : 356 ! ||||||! !!.!:!:|||||||||||| !|||!:!! !:!:|||!:!|| LeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArgArgAs 1703090 : CTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGAAGAGA : 1703146 357 : pLeuGlnPheValValValArgSerArgArgAlaCysSerLeuThrGlyCysGlyP : 375 |||| !.!.|||:!!||||||||||||!:!:!! !!!!!||||||!.! !!|||| pLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSerGlyP 1703147 : CTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAGCGGAT : 1703203 376 : hePheAlaIleSerLeuGluThrTyrThrLysIleMetSerThrAlaMetSer : 392 ||||| !!:!!||||||||||||! !|||! !:!!.!.!:! !:!!.!.||| hePheProValSerLeuGluThrCysThrThrValPheAsnPheSerPheSer 1703204 : TCTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATTTCTCATTCTCT : 1703256 vulgar: AfOr94 183 392 . KQ414915.1 1702013 1703256 + 494 M 58 174 G 0 9 M 64 192 S 0 1 5 0 2 I 0 603 3 0 2 S 1 2 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1703256 494 + . gene_id 4 ; sequence AfOr94 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702014 1702389 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702389 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1702390 1702391 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1702390 1702996 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702995 1702996 . + . intron_id 0 ; splice_site "AT" KQ414915.1 exonerate:protein2genome:local cds 1702997 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1702997 1703256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1703256 494 + . alignment_id 4 ; Query AfOr94 ; Align 1702014 184 174 ; Align 1702197 242 192 ; Align 1702999 307 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr94 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 265 Query range: 300 -> 406 Target range: 1712390 -> 1712708 301 : ArgIleSerPheLeuCysPheLeuIleThrAsnMetCysGlnLeuTrpMetPheTh : 319 !:!!:: ||| ||| ! !|||||||||||| !|||||||| GlnMetIlePheThrPheHisLeuAlaGlyCysMetCysGlnLeuLeuMetPheTh 1712391 : CAGAtgattttcacgtttcacctAGCGGGATGTATGTGTCAATTGCTGATGTTTAC : 1712445 320 : rTyrSerCysAspCysMetThrArgGluSerValAsnValAlaSerAlaValTyrS : 338 ||||||||||||||||!!:! !! !||||||:!!||||||.!!..!|||||||||. rTyrSerCysAspCysIleIleThrGluSerLeuAsnValThrGluAlaValTyrA 1712446 : GTACAGCTGCGATTGTATAATAACGGAAAGTTTGAACGTGACGGAAGCGGTGTACG : 1712502 339 : erIleProTrpThrArgIleProMetAspLysPheGlyLysMetIleArgLysAsp : 356 .! !|||||| !!|||:!:||||||..!! ! |||!:!||||||||||||||| spGlyProTrpProArgLeuProMetSerThrArgGlyArgMetIleArgLysAsp 1712503 : ATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGAAGAATGATAAGGAAGGAT : 1712556 357 : LeuGlnPheValValValArgSerArgArgAlaCysSerLeuThrGlyCysGlyPh : 375 ||| !.!!|||:!!:!!||||||||| ! !!|||!!!||||||!.! ! ||||| LeuIleLeuValIleIleArgSerArgValProCysCysLeuThrAlaArgGlyPh 1712557 : TTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTGCTTGACCGCCAGAGGATT : 1712613 376 : ePheAlaIleSerLeuGluThrTyrThrLysIleMetSerThrAlaMetSerTyrP : 394 ||||!.!||||||||||||||||||||||||:!!!!:..!:!! ! :!!! . ePheValIleSerLeuGluThrTyrThrLysValIleAspSerLeuSerAlaLeuL 1712614 : CTTCGTAATATCTTTGGAAACGTATACGAAGGTAATTGACTCTCTGTCTGCGTTGC : 1712670 395 : heThrIleLeuLysGlnArgThrIleGluIleGluAsn : 406 !! ! !! !|||!:: !!! !||| ! !|||!:! euCysArgCysLysArgGlyLysIle***AlaGluSer 1712671 : TTTGTCGTTGTAAACGCGGAAAGATATGAGCTGAGAGT : 1712708 vulgar: AfOr94 300 406 . KQ414915.1 1712390 1712708 + 265 M 106 318 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712391 1712708 265 + . gene_id 5 ; sequence AfOr94 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1712391 1712708 . + . KQ414915.1 exonerate:protein2genome:local exon 1712391 1712708 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712391 1712708 265 + . alignment_id 5 ; Query AfOr94 ; Align 1712391 301 318 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr94 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 244 Query range: 183 -> 300 Target range: 1688334 -> 1688673 184 : GlnAlaLeuCysLeuTyrGlnValGlyIleCysTyrLeuCysValAspAsnMetPh : 202 ||||||||||||:!!||||||:!!||| !..!|||:!!||| !|||!...!.|| GlnAlaLeuCysValTyrGlnIleGlyAlaAlaTyrIleCysSerAspThrPhePh 1688335 : CAGGCGCTGTGCGTGTATCAAATCGGCGCCGCCTATATCTGCTCCGACACGTTTTT : 1688389 203 : eCysIleMetCysLeuHisLeuAlaSerGlnPheArgIleLeuGlnTyrArgLeuV : 221 ||||!!::!! !:!!|||:!! !!!!|||||||||||||||.!.|||||||||: eCysMetLeuAsnMetHisValIleCysGlnPheArgIleLeuAsnTyrArgLeuL 1688390 : CTGCATGCTGAACATGCACGTGATCTGCCAGTTCCGTATACTAAATTACAGACTGT : 1688446 222 : alAsnLeuSerSerValGluAsnLysGluGluValAspAsnGluGluAsnMetAsp : 239 !!|||:!!!!! !!||| :!! !!:... !.!.! ! !!: euAsnMetTrpProValIleAsp------------GluArgThrAsnMetThrGlu 1688447 : TGAACATGTGGCCGGTCATCGAC------------GAGCGAACGAACATGACCGAA : 1688488 240 : SerSerGlyArgCysTyrAlaIleLeuLysAsnCysIleArgGlnHisGlnAlaLe : 258 ! !!!!..!!:!||||||.!!! |||! !:!!||||||!:!.!.||||||:!!|| TyrThrAsnLysCysTyrThrLysLeuIleAspCysIleLysAsnHisGlnSerLe 1688489 : TACACGAACAAATGTTACACCAAGCTGATAGATTGCATCAAAAATCATCAGTCGTT : 1688545 259 : uIleGlnPheSerIleThrLeuGluGluIlePheThrIleIleThrLeuGlyGlnV : 277 ||||:!!|||!!!:!:! !||||||.!.:!:!:!|||:!:! !! !||||||!!.: uIleGluPheCysValLysLeuGluAsnValTyrThrLeuThrIleLeuGlyHisI 1688546 : GATCGAGTTCTGCGTGAAACTCGAGAACGTGTACACGTTGACTATACTCGGCCACA : 1688602 278 : alLeuIlePheSerThrLeuIleCysPheValGlyTyrGlnValLeuLeuValAsn : 295 !!:!!:!!|||||| !|||!!:||||||! ! !|||:!!|||:!!||||||..! leValValPheSerLeuLeuMetCysPheAspThrTyrGluValValLeuValGly 1688603 : TAGTGGTCTTCAGCTTGTTGATGTGCTTCGACACGTACGAGGTAGTTCTGGTAGGT : 1688656 296 : LeuThrPheSerTrp : 300 :!!!.!!:!...::: ValAsnTyrGlyPhe 1688657 : GTGAATTATGgtttt : 1688673 vulgar: AfOr94 183 300 . KQ414915.1 1688334 1688673 + 244 M 45 135 G 4 0 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688335 1688673 244 + . gene_id 6 ; sequence AfOr94 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1688335 1688673 . + . KQ414915.1 exonerate:protein2genome:local exon 1688335 1688673 . + . insertions 0 ; deletions 4 KQ414915.1 exonerate:protein2genome:local similarity 1688335 1688673 244 + . alignment_id 6 ; Query AfOr94 ; Align 1688335 184 135 ; Align 1688470 233 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr94 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 242 Query range: 179 -> 295 Target range: 1711870 -> 1712233 180 : ThrTyrValIleGlnAlaLeuCysLeuTyrGlnValGlyIleCysTyrLeuCysVa : 198 ||| !! !|||!.!|||! ! !||||||:!!|||:!: !!||| !||| ! ThrThrPheAlaGlnValLeuSerAlaTyrGlnIleGlyValSerTyrGlyCysPh 1711871 : ACAACATTTGCACAGGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGGTTGCTT : 1711925 199 : lAspAsnMetPheCysIleMetCysLeuHisLeuAlaSerGlnPheArgIleLeuG : 217 !||||||:!:.!.||||||||| !||||||||||||!!!|||||||||||||||| eAspAsnValLeuCysIleMetAsnLeuHisLeuAlaThrGlnPheArgIleLeuG 1711926 : CGACAACGTTCTATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAATACTGC : 1711982 218 : lnTyrArgLeuValAsnLeuSerSerValGluAsnLysGluGluValAspAsnGlu : 235 ||:!!||||||||||||:!!!:!.!!:!!:!!!:!|||:!! ! !!!:!!.! lnHisArgLeuValAsnIleAsnGlyLeuLysSerLysGlnThrProGluLysGly 1711983 : AACATAGACTGGTGAATATAAACGGTCTGAAGAGCAAACAGACACCGGAGAAAGGT : 1712036 236 : GluAsn<-><->MetAspSer<-><-><->SerGlyArgCysTyrAlaIleLeuLy : 249 |||!.. !!:|||||| :!!! !!.!! !|||! !:!!!!!|| GluThrSerIleIleAspSerThrGluPheAlaAspAsnSerTyrAspValPheLy 1712037 : GAAACGTCGATTATAGATTCGACAGAATTTGCGGATAACTCTTACGACGTTTTCAA : 1712093 250 : sAsnCysIleArgGlnHisGlnAlaLeuIleGlnPheSerIleThrLeuGluGluI : 268 |!..|||:!!||||||||||||:!!|||!!: |||! |||||||||: sArgCysValArgGlnHisGlnSerLeuMetAlaPheCysGluLysLeuGluGluM 1712094 : AAGATGCGTTCGTCAACATCAATCTCTGATGGCTTTCTgcgagaaactcgaagaaa : 1712150 269 : lePheThrIleIleThrLeuGlyGlnValLeuIlePheSerThrLeuIleCysPhe : 286 ::|||!:!!!:|||! !|||||||||:!!|||:!:||||||! !!!!!!:|||.!! etPheSerMetIleIleLeuGlyGlnLeuLeuValPheSerIlePheMetCysLeu 1712151 : tgTTCAGTATGATTATACTGGGGCAATTGTTAGTGTTCAGTATTTTTATGTGTCTC : 1712204 287 : ValGlyTyrGlnValLeuLeuValAsn : 295 ! !! !! !|||||||||||||||!:! AspValCysGlnValLeuLeuValSer 1712205 : GACGTGTGCCAAGTACTTCTGGTTAGT : 1712233 vulgar: AfOr94 179 295 . KQ414915.1 1711870 1712233 + 242 M 58 174 G 0 6 M 3 9 G 0 9 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711871 1712233 242 + . gene_id 7 ; sequence AfOr94 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1711871 1712233 . + . KQ414915.1 exonerate:protein2genome:local exon 1711871 1712233 . + . insertions 15 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711871 1712233 242 + . alignment_id 7 ; Query AfOr94 ; Align 1711871 180 174 ; Align 1712051 238 9 ; Align 1712069 241 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr94 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 150 -> 187 Target range: 1711237 -> 1711348 151 : AsnIleGlyLysAsnGluSerAspArgMetLeuIlePheAsnMetTrpLeuAspLe : 169 |||||||||!:!|||||||||||||||!!:||| |||!!.||||||:!!|||:! AsnIleGlyArgAsnGluSerAspArgIleLeuProPheLysMetTrpIleAspIl 1711238 : AATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTGGATTGATAT : 1711292 170 : uProLeuSerMetSerProTyrPheGluIleThrTyrValIleGlnAlaLeuCys : 187 !||| !||||||!!!||||||||||||||| :::...:!!|||!.!! !||| eProThrSerMetThrProTyrPheGluIlePhePheThrLeuGlnValHisCys 1711293 : ACCGACATCGATGACACcgtattttgaaatattcttcaccTTACAGGTACATTGT : 1711348 vulgar: AfOr94 150 187 . KQ414915.1 1711237 1711348 + 137 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711238 1711348 137 + . gene_id 8 ; sequence AfOr94 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1711238 1711348 . + . KQ414915.1 exonerate:protein2genome:local exon 1711238 1711348 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711238 1711348 137 + . alignment_id 8 ; Query AfOr94 ; Align 1711238 151 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr94 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 0 -> 68 Target range: 1700446 -> 1700650 1 : MetSerLeuLysHisArgArgAspValSerPheSerLeuAlaThrPhePheLeuAr : 19 |||!!!! !||| ! !.!|||||||||||| ! |||:!!.!!.!!|||!:!|||!: MetThrSerLysLysAsnArgAspValSerValSerValThrAlaPheTyrLeuLy 1700447 : ATGACTTCGAAGAAGAACAGGGACGTATCAGTGAGCGTCACAGCTTTCTACTTGAA : 1700501 20 : gValValGlyPheTrpLeuThrSerSerProLeuGluGluTrpLeuGlyAsnValT : 38 !:!!:!!||||||||||||.!!..!!!! ! !|||:!! ! ! ! !!!!. !!. sIleIleGlyPheTrpLeuAlaAspThrTyrGluGluLysArgArgArgLysPheA 1700502 : AATCATCGGCTTCTGGTTAGCTGACACTTACGAGGAGAAACGTCGAAGAAAGTTCG : 1700558 39 : hrValMetTyrSerIleIleThrIleValPheSerMetTrpValGlnThrArgGly : 56 !! !! ! !!!!|||:!!! !:!!:!!! !:!!:!! !:!!:!!..!|||! ! laGlnAsnCysThrIleLeuMetLeuMetCysAlaValLeuLeuGluValArgAsp 1700559 : CGCAGAATTGCACGATACTTATGCTTATGTGCGCTGTGCTGCTTGAGGTGAGGGAT : 1700612 57 : LeuTyrPheSerTrpGlyAspPheGlyValCysThr : 68 :!!||| !! !|||||||||||||||||| !!||| IleTyrHisIleTrpGlyAspPheGlyValSerThr 1700613 : ATCTATCACATCTGGGGAGATTTCGGCGTAAGTACA : 1700650 vulgar: AfOr94 0 68 . KQ414915.1 1700446 1700650 + 129 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1700447 1700650 129 + . gene_id 9 ; sequence AfOr94 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1700447 1700650 . + . KQ414915.1 exonerate:protein2genome:local exon 1700447 1700650 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1700447 1700650 129 + . alignment_id 9 ; Query AfOr94 ; Align 1700447 1 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr94 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 300 -> 387 Target range: 1678491 -> 1678746 301 : ArgIleSerPheLeuCysPheLeuIleThrAsnMetCysGlnLeuTrpMetPheTh : 319 |||!!: !!:!:!! !:!:!!:!!.!!::::!!! :!!||||||:!!.!... ArgMetValTyrIleMetTyrMetValAlaSerValSerGluLeuTrpLeuIleVa 1678492 : CGCATGGTCTACATCATGTACATGGTTGCCTCAGTGTCAGAATTATGGTTGATAGT : 1678546 320 : rTyrSerCysAspCysMetThrArgGluSerValAsnValAlaSerAlaValTyrS : 338 ! !!! ||| :!!|||! !.!.||| ! :!!!.!..!|||:!!|||| lArgThrValAspGluLeuThrThrHisSerLysAlaIleGlyAspAlaMetTyrS 1678547 : CCGAACCGTAGACGAACTGACCACTCATAGCAAAGCGATCGGCGATGCGATGTATT : 1678603 339 : erIleProTrpThrArgIleProMetAspLysPheGlyLysMetIleArgLysAsp : 356 || !||| ! ||| ... |||... ||| :::::: erSerAspTrpGlyValIle---PheGlyLysLeuGluLysLysLeuLysPheAla 1678604 : CCTCGGATTGGGGAGTgatc---tttggaaaattggagaagaaattaaaatttgcc : 1678654 357 : LeuGlnPheValValValArgSerArgArgAlaCysSerLeuThrGlyCysGlyPh : 375 ||| ! :!!|||:!!||||||! !..!.!!||||||:!!! ! ..!||||| LeuThrThrMetValIleArgSerIleGluThrCysSerMetLys---AlaGlyPh 1678655 : tTGACGACGATGGTTATCAGATCGATCGAGACGTGTTCTATGAAA---GCTGGCTT : 1678708 376 : ePheAlaIleSerLeuGluThrTyrThrLysIleMet : 387 |||||||:!!||| !||||||!:!|||..!:!!!!: ePheAlaValSerSerGluThrPheThrSerValIle 1678709 : CTTTGCGGTCTCCAGTGAGACGTTTACATCGGTAATT : 1678746 vulgar: AfOr94 300 387 . KQ414915.1 1678491 1678746 + 115 M 44 132 G 1 0 M 26 78 G 1 0 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1678492 1678746 115 + . gene_id 10 ; sequence AfOr94 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1678492 1678746 . + . KQ414915.1 exonerate:protein2genome:local exon 1678492 1678746 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local similarity 1678492 1678746 115 + . alignment_id 10 ; Query AfOr94 ; Align 1678492 301 132 ; Align 1678624 346 78 ; Align 1678702 373 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr94 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 180 -> 231 Target range: 1681938 -> 1682091 181 : TyrValIleGlnAlaLeuCysLeuTyrGlnValGlyIleCysTyrLeuCysValAs : 199 :::..!:!:|||.!!|||! !:!! !!. !|||||||||!:!! !||| !!|| PheThrLeuGlnThrLeuSerValValHisSerGlyIleCysPheCysCysPheAs 1681939 : ttcaCTTTGCAGACATTATCTGTGGTGCATTCGGGAATTTGTTTCTGTTGTTTCGA : 1681993 200 : pAsnMetPheCysIleMetCysLeuHisLeuAlaSerGlnPheArgIleLeuGlnT : 218 ||||.!..!.||||||:!! !!:!!|||:!!!.!.!!||||||!:!||||||||| pAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLysIleLeuGlnA 1681994 : CAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAGATTTTACAAA : 1682050 219 : yrArgLeuValAsnLeuSerSerValGluAsnLysGluGlu : 231 !!!:!||| !!..:!!! !|||! !:!::::...:::||| snLysLeuGlnThrValLeuSerGluLysSerSerLysGlu 1682051 : ACAAACTCCAAACAGTATTGAGTGAGAAatcttcgaaagaa : 1682091 vulgar: AfOr94 180 231 . KQ414915.1 1681938 1682091 + 114 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681939 1682091 114 + . gene_id 11 ; sequence AfOr94 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1681939 1682091 . + . KQ414915.1 exonerate:protein2genome:local exon 1681939 1682091 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681939 1682091 114 + . alignment_id 11 ; Query AfOr94 ; Align 1681939 181 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr90 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 635 Query range: 5 -> 293 Target range: 1697524 -> 1699977 6 : AspIleSerValAsnLeuSerSerPhePheLeuLysSerIleGlyLeuTrpIleAl : 24 |||.!!:!!:!! :!!!!!||||||!!.:!!|||! !:!!|||||||||:!!|| AspPheAlaLeuLeuMetThrSerPheLeuMetLysIleValGlyLeuTrpLeuAl 1697525 : GATTTTGCTCTGTTAATGACGTCGTTTTTAATGAAGATCGTCGGTCTTTGGTTAGC : 1697579 25 : aAspAspSerThrAspGluArgArgArgLysGlyMetLeuAlaTyrThrValTrpC : 43 | ! ||||||! !!!:||||||!:!|||::! !! ||| !||||||||| . aLysAspSerLysGluGluArgLysArgArgTyrThrLeuIleTyrThrValValA 1697580 : GAAAGACAGCAAGGAGGAACGCAAGCGTCGGTACACTTTGATCTATACGGTGGTCG : 1697636 44 : ysThrPhePheSerThrValIleThrSerArgAspLeuTyrPheThrTrpIleTyr : 61 ..! !!!.|||.!!..! !:!: !! !||||||!!!|||!:!:!!||| !! laIleLeuPheGlyValTrpValGlnPheArgAspPheTyrTyrSerTrpProAsn 1697637 : CGATTTTGTTTGGAGTGTGGGTGCAGTTCAGAGACTTCTATTACTCCTGGCCGAAT : 1697690 62 : AsnGly >>>> Target Intron 1 >>>> AspIleLeuTyrAlaLeuThr : 70 !||| 849 bp ||| ! !|||.!! ! ! PheGly++ ++AspCysAlaTyrThrAlaCys 1697691 : TTTGGCgt.........................aggACTGTGCTTACACCGCTTGT : 1698566 71 : AsnTyrThrSerValMetMetIleLeuLeuLysIleCysValIleValValHisLy : 89 ||| ! !!!!:!!!!:|||:!!|||||||||:!:! !|||:!! !!:!!|||!: AsnIleLeuCysLeuIleMetValLeuLeuLysLeuPheValValPheIleHisAr 1698567 : AACATTCTCTGCCTGATTATGGTACTGTTAAAGCTGTTCGTTGTATTCATACACAG : 1698623 90 : sGlyGluPheIleAsnLeuIleValHisMetGlnGlnTyrPheTrpAsnValAsnT : 108 ! !|||||||||.!.|||:::|||:::||| ::: ||||||:!!:!!|||| gLysGluPheIleGluLeuLeuValTyrMetTyrLysAsnPheTrpHisLeuAsnT 1698624 : GAAAGAATTCATCGAACTgcttgtatatatgtacaaaaatttttggcACCTCAATT : 1698680 109 : yrAspSerArgGluLysGluIleLeuAsnSerCysLysLysThrCysAlaPhePhe : 126 |||||!!!!.!||| ! !:!:|||.!...!|||!:!!:!! ! !!.!!.!.! ! yrAspCysAsnGluLeuLeuLeuLeuGlnAspCysArgArgIleSerThrIleCys 1698681 : ACGATTGCAACGAACTACTACTGCTGCAAGACTGCAGAAGAATTAGCACTATATGT : 1698734 127 : ValSerSerValThrPheIleGlyIleCysAlaIleLeuSerTyrLeuThrThrPr : 145 :!!!!!! !:!!!.!||| !!.! ! !!.!!|||:!!||||||:!! !||||| IleThrLeuIleAsnPheCysAlaGlnGlyThrIleValSerTyrValLeuThrPr 1698735 : ATCACGTTGATTAACTTCTGTGCTCAAGGCACAATTGTCAGCTACGTGCTAACACC : 1698791 146 : oPheThr{A} >>>> Target Intron 2 >>>> {la}ArgIleGlyAsnA : 153 |.!!! !{|} 232 bp {||}...||||||...| oIleIle{A}++ ++{la}AsnIleGlyArgA 1698792 : TATTATA{G}gt.........................ag{ca}aatattggaagaa : 1699047 154 : snGluSerGluArgIleLeuProPheAsnMetTrpLeuAsnLeuProLeuSerGln : 171 ||...|||!!:|||:!:||||||||||||||||||:!!:!!|||||||||||| ! snSerSerAspArgValLeuProPheAsnMetTrpValAspLeuProLeuSerVal 1699048 : aCAGTTCCGATAGAGTGCTCCCATTCAACATGTGGGTTGATTTGCCGCTGTCTGTG : 1699101 172 : ThrProTyrTyrGluLeuSerPheIleIleGln >>>> Target Intron 3 : 183 :!!||| ||||||:!! !|||:!::!!||| 499 bp SerProThrTyrGluIleValPheValLeuGln++ 1699102 : TCACCAACGTACGAAATAGTGTTCGTGCTTCAGgt..................... : 1699139 184 : >>>> IleValThrLeuTyrCysIleGlyIleCysTyrPheCysPheAspAsnVa : 199 :!!:!!:!!|||||| !:!!|||:!!||||||.!!||||||||||||:! ++ValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLe 1699140 : ....agGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCT : 1699684 200 : lPheCysIleMetAlaIleHisLeuThrGlyGlnPheArgIleLeuGlyTyrArgP : 218 !!!.|||:!:||| !:!:||| !.!! !||||||||||||||| !||||||! uLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgL 1699685 : TTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGT : 1699741 219 : heThrLysLeuCysAspThr<-><-><->GluIleCysGluLysGlyAlaGluSer : 233 !.:!!!!.||| !!|||||| :!!:!! !!!:!!.! !:!!...:!! euSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAla 1699742 : TATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCA : 1699795 234 : GlyLeuAlaLysArgValHisThrCysTyrGluLysPheLysGluHisValArgTy : 252 !.!|||:!!::: !!.!.!.!.!||||||:!! !||||||.!. !|||||| ! AlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGl 1699796 : GCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACA : 1699852 253 : rHisGlnAlaLeuIleAsnPheTyrThrLysLeuGluAsnValTyrThrMetIleI : 271 |||||| !! !|||!..!:!! ! !!:!|||.!..!.:!!!:!|||:!:|||: nHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleV 1699853 : ACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTG : 1699909 272 : leLeuGlyGlnValIleLeuPheSerValLeuIleCysLeuPheCysTyrGlnVal : 289 !!||||||!!.:!!:!!:!!||||||:!!|||||||||||| !! ! !:!|||||| alLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnVal 1699910 : TACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTG : 1699963 290 : LeuLeuAlaAsn : 293 |||:!!! !||| LeuValGluAsn 1699964 : CTCGTAGAAAAC : 1699977 vulgar: AfOr90 5 293 . KQ414915.1 1697524 1699977 + 635 M 58 174 5 0 2 I 0 845 3 0 2 M 84 252 S 0 1 5 0 2 I 0 228 3 0 2 S 1 2 M 34 102 5 0 2 I 0 495 3 0 2 M 42 126 G 0 9 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1697525 1699977 635 + . gene_id 1 ; sequence AfOr90 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1697525 1697698 . + . KQ414915.1 exonerate:protein2genome:local exon 1697525 1697698 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1697699 1697700 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1697699 1698547 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1698546 1698547 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1698548 1698800 . + . KQ414915.1 exonerate:protein2genome:local exon 1698548 1698800 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1698801 1698802 . + . intron_id 2 ; splice_site "Gt" KQ414915.1 exonerate:protein2genome:local intron 1698801 1699032 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1699031 1699032 . + . intron_id 1 ; splice_site "Ag" KQ414915.1 exonerate:protein2genome:local cds 1699033 1699136 . + . KQ414915.1 exonerate:protein2genome:local exon 1699033 1699136 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699137 1699138 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699137 1699635 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1699634 1699635 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699636 1699977 . + . KQ414915.1 exonerate:protein2genome:local exon 1699636 1699977 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1697525 1699977 635 + . alignment_id 1 ; Query AfOr90 ; Align 1697525 6 174 ; Align 1698548 64 252 ; Align 1699035 149 102 ; Align 1699636 183 126 ; Align 1699771 225 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr90 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 606 Query range: 145 -> 398 Target range: 1694346 -> 1696257 146 : PheThrAlaArgIleGlyAsnAsnGluSerGluArgIleLeuProPheAsnMetTr : 164 ||| !|||!.!:!!|||!!.|||:!!|||||||||!!:||||||||||||||||| PheLeuAlaAsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTr 1694347 : TTTTTAGCAAATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTG : 1694401 165 : pLeuAsnLeuProLeuSerGlnThrProTyrTyrGluLeuSerPheIleIleGln : 183 |:!!:!!!!!||| !.!! !:!!||||||||||||:!! !|||||||||||| pValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGln+ 1694402 : GGTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGg : 1694458 184 : >>>> Target Intron 1 >>>> IleValThrLeuTyrCysIleGlyIleC : 192 409 bp ! !:!! !:!!||| !:!!||||||| + ++ThrLeuCysValTyrHisValGlyIleC 1694459 : t.........................agACACTTTGCGTGTACCATGTCGGTATAT : 1694894 193 : ysTyrPheCysPheAspAsnValPheCysIleMetAlaIleHisLeuThrGlyGln : 210 |||||.!.||||||||||||:!!.!! !!:!!:!! !:!!|||:!!.!! !||| ysTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGln 1694895 : GTTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAA : 1694948 211 : PheArgIleLeuGlyTyrArgPheThrLysLeu<-><-><->CysAspThrGluIl : 226 |||||||||||| !|||||||||! !!!.||| !!!:! !:!!! PheArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLysGlnTh 1694949 : TTTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAAC : 1695005 227 : eCysGluLysGlyAlaGluSerGlyLeuAlaLysArgValHisThrCysTyrGluL : 245 ! !! ::: ||| |||! !.!!!!. !..! ! ! !!||| !: rAspGlyArgGluLeuGluIleGlyTyrThrAsnPheThrValAspSerTyrLeuG 1695006 : AGACGGTcgagaattggaaattggtTACACAAATTTCACAGTCGATAGTTACTTAC : 1695062 246 : ysPheLysGluHisValArgTyrHisGlnAlaLeuIleAsnPheTyrThrLysLeu : 263 !!!!.|||... !|||!:!|||||||||||||||! !..!!:!! !! !|||||| lnLeuLysSerCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeu 1695063 : AATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTG : 1695116 264 : GluAsnValTyrThrMetIleIleLeuGlyGlnValIleLeuPheSerValLeuIl : 282 ||||||:!!!:!:!!:!!:!!:!:||||||||||||:!!!!!.!.:!!:!!:!!:! GluAsnIlePheSerLeuLeuValLeuGlyGlnValLeuPheLeuAlaMetValLe 1695117 : GAGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTACT : 1695173 283 : eCysLeuPheCysTyrGlnValLeuLeu >>>> Target Intron 2 >>>> : 292 !|||||| ! ! ||||||:!!!!!||| 415 bp uCysLeuValGlyTyrGlnLeuPheLeu++ + 1695174 : TTGCCTCGTGGGATATCAGCTATTTCTGgt.........................a : 1695616 293 : AlaAsnAlaProSerAlaArgArgSerIlePheIlePheLeuLeuIleGlyAlaM : 310 .!!:!!:!!||| !!:!!|||!.! ! !!!.:!!.!! !||| !|||.!!: +ThrAspSerProProSerArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrL 1695617 : gACAGACTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTT : 1695672 311 : etSerLeuLeuPheMetPheThrTyrSerCysAspGlyValIleGluGlnSerAsp : 328 !!!!!! !||||||||||||||||||||||||||||||:!!! !..!:!!||| euCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGluSerMet 1695673 : TGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATG : 1695726 329 : AsnValAlaValGluAlaTyrSerAlaLeuTrpThrIleLeuProMetAspLysPh : 347 :!!|||::! !! !.!!:!:!! !! !|||.!!! !||||||||||||!:! AspValSerArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAspArgAs 1695727 : GACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAA : 1695783 348 : eGlyArgMetIleArgLysAspLeuIleMetValMetGluArgSerArgArgValC : 366 !|||!:!! :!:|||:!!..!:!!:!!||||||!!: !||||||!.!||| !| nGlyLysSerValArgGlnSerMetLeuMetValIleMetArgSerAsnArgCysC 1695784 : TGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTT : 1695840 367 : ysCysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrThr > : 384 ||||||||||||||!:!||||||||||||||||||||||||||||||||| ! ysCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrGly++ 1695841 : GCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGgt. : 1695896 385 : >>> Target Intron 3 >>>> IleLeuSerThrAlaValSerTyrPheThr : 393 319 bp :!!||||||||||||:!!|||||||||||| ++ValLeuSerThrAlaMetSerTyrPheThr 1695897 : ........................agGTCCTCAGCACTGCAATGTCATACTTTACA : 1696240 394 : LeuLeuArgAsnAsn : 398 |||||||||.!.::: LeuLeuArgGlnSer 1696241 : CTACTGAGACAATCG : 1696257 vulgar: AfOr90 145 398 . KQ414915.1 1694346 1696257 + 606 M 37 111 5 0 2 I 0 405 3 0 2 M 39 117 G 0 9 M 70 210 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694347 1696257 606 + . gene_id 2 ; sequence AfOr90 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694347 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694347 1694457 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 2 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696257 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696257 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694347 1696257 606 + . alignment_id 2 ; Query AfOr90 ; Align 1694347 146 111 ; Align 1694867 183 117 ; Align 1694993 222 210 ; Align 1695618 292 276 ; Align 1696213 384 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr90 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 593 Query range: 141 -> 404 Target range: 1711216 -> 1713342 142 : LeuThrThrProPheThrAlaArgIleGlyAsnAsnGluSerGluArgIleLeuPr : 160 ||| !|||! ! !!:!!!.!!.!||||||!..|||||||||!!:||||||||||| LeuAspThrArgValSerValAsnIleGlyArgAsnGluSerAspArgIleLeuPr 1711217 : CTCGATACTCGTGTTTCAGTGAATATTGGAAGAAACGAATCCGACAGAATACTGCC : 1711271 161 : oPheAsnMetTrpLeuAsnLeuProLeuSerGlnThrProTyrTyrGluLeuSerP : 179 ||||!!.||||||:!!:!!:!!||| !|||..!|||||||||:::|||::: | oPheLysMetTrpIleAspIleProThrSerMetThrProTyrPheGluIlePheP 1711272 : GTTTAAAATGTGGATTGATATACCGACATCGATGACACcgtattttgaaatattct : 1711328 180 : heIleIleGln >>>> Target Intron 1 >>>> IleValThrLeuTyrC : 188 || :!!||| 546 bp :!!:!!:!! !||| heThrLeuGln++ ++ValLeuSerAlaTyrG 1711329 : tcaccTTACAGgt.........................agGTTTTATCCGCGTATC : 1711901 189 : ysIleGlyIleCysTyrPheCysPheAspAsnValPheCysIleMetAlaIleHis : 206 ||||||:!: !!||| !|||||||||||||||.!.||||||||| !:!!||| lnIleGlyValSerTyrGlyCysPheAspAsnValLeuCysIleMetAsnLeuHis 1711902 : AAATTGGCGTGAGTTACGGTTGCTTCGACAACGTTCTATGCATCATGAACCTACAC : 1711955 207 : LeuThrGlyGlnPheArgIleLeuGlyTyrArgPheThrLys<-><-><->LeuCy : 222 |||.!! !||||||||||||||| !:!!|||.!...!!!. ||| LeuAlaThrGlnPheArgIleLeuGlnHisArgLeuValAsnIleAsnGlyLeuLy 1711956 : TTGGCCACTCAGTTTCGAATACTGCAACATAGACTGGTGAATATAAACGGTCTGAA : 1712012 223 : sAspThrGluIleCysGluLysGlyAlaGluSerGlyLeu<-><->AlaLysArgV : 239 ..!! !:!!! ! |||||||||! ! !||| !:!! .!!:!! !! sSerLysGlnThrProGluLysGlyGluThrSerIleIleAspSerThrGluPheA 1712013 : GAGCAAACAGACACCGGAGAAAGGTGAAACGTCGATTATAGATTCGACAGAATTTG : 1712069 240 : alHisThrCysTyrGluLysPheLysGluHisValArgTyrHisGlnAlaLeuIle : 257 .! !!!.!! !|||!!: ||||||..! !|||||| ! ||||||:!!|||!!: laAspAsnSerTyrAspValPheLysArgCysValArgGlnHisGlnSerLeuMet 1712070 : CGGATAACTCTTACGACGTTTTCAAAAGATGCGTTCGTCAACATCAATCTCTGATG : 1712123 258 : AsnPheTyrThrLysLeuGluAsnValTyrThrMetIleIleLeuGlyGlnValIl : 276 !|||! |||||||||...:::!:!!:!||||||||||||||||||:!!:! AlaPheCysGluLysLeuGluGluMetPheSerMetIleIleLeuGlyGlnLeuLe 1712124 : GCTTTCTgcgagaaactcgaagaaatgTTCAGTATGATTATACTGGGGCAATTGTT : 1712180 277 : eLeuPheSerValLeuIleCysLeuPheCysTyrGlnValLeuLeu >>>> Tar : 292 !:!!||||||:!!!!!!!:|||||| ! ! !|||||||||||| uValPheSerIlePheMetCysLeuAspValCysGlnValLeuLeu++ 1712181 : AGTGTTCAGTATTTTTATGTGTCTCGACGTGTGCCAAGTACTTCTGgt........ : 1712230 293 : get Intron 2 >>>> AlaAsnAlaProSerAlaArgArgSerIlePheIleP : 304 142 bp !!..!||| !! !!.!!:!!:!! |||||| | ++ProGlyAlaSerValGlyLysGlnMetIlePheThrP 1712231 : .................agCCAGGTGCATCTGTGGGTAAACAGAtgattttcacgt : 1712406 305 : heLeuLeuIleGlyAlaMetSerLeuLeuPheMetPheThrTyrSerCysAspGly : 322 || ||| |||..!|||!!!! !|||.!.||||||||||||||||||||| !! heHisLeuAlaGlyCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCys 1712407 : ttcacctAGCGGGATGTATGTGTCAATTGCTGATGTTTACGTACAGCTGCGATTGT : 1712460 323 : ValIleGluGlnSerAspAsnValAlaValGluAlaTyrSerAlaLeuTrpThrIl : 341 :!!||| !:!!||| ||||||.!!! !! !!.!|||..!!.!! !||| !! IleIleThrGluSerLeuAsnValThrGluAlaValTyrAspGlyProTrpProAr 1712461 : ATAATAACGGAAAGTTTGAACGTGACGGAAGCGGTGTACGATGGACCATGGCCACG : 1712517 342 : eLeuProMetAspLysPheGlyArgMetIleArgLysAspLeuIleMetValMetG : 360 !|||||||||..!! ! |||||||||||||||||||||||||||:!:|||!!: gLeuProMetSerThrArgGlyArgMetIleArgLysAspLeuIleLeuValIleI 1712518 : TTTGCCAATGAGCACGAGAGGAAGAATGATAAGGAAGGATTTGATACTCGTTATCA : 1712574 361 : luArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePheProValSerLeu : 378 !||||||||| ! !|||||||||||||||!..||||||||| !:!!|||||| leArgSerArgValProCysCysLeuThrAlaArgGlyPhePheValIleSerLeu 1712575 : TAAGATCGAGAGTACCTTGTTGCTTGACCGCCAGAGGATTCTTCGTAATATCTTTG : 1712628 379 : GluThrTyrThrThr >>>> Target Intron 3 >>>> IleLeuSerThr : 387 ||||||||||||! ! 634 bp :!!:!!|||||| GluThrTyrThrLys++ ++ValIleSerThr 1712629 : GAAACGTATACGAAGgt.........................agGTTATAAGTACA : 1713289 388 : AlaValSerTyrPheThrLeuLeuArgAsnAsnValGluAsnAspLysAsn : 404 |||||||||||||||||||||||||||.!...!:!!|||.!...!!!.!:! AlaValSerTyrPheThrLeuLeuArgGlnArgIleGluGluSerAsnSer 1713290 : GCAGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAGGAAAGCAATAGT : 1713342 vulgar: AfOr90 141 404 . KQ414915.1 1711216 1713342 + 593 M 41 123 5 0 2 I 0 542 3 0 2 M 38 114 G 0 9 M 15 45 G 0 6 M 56 168 5 0 2 I 0 138 3 0 2 M 92 276 5 0 2 I 0 630 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711217 1713342 593 + . gene_id 3 ; sequence AfOr90 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1711217 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711217 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712227 . + . insertions 15 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712228 1712229 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712228 1712369 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1712368 1712369 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1712370 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712370 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713342 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713342 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711217 1713342 593 + . alignment_id 3 ; Query AfOr90 ; Align 1711217 142 123 ; Align 1711886 183 114 ; Align 1712009 221 45 ; Align 1712060 236 168 ; Align 1712370 292 276 ; Align 1713280 384 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr90 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 563 Query range: 145 -> 396 Target range: 1706992 -> 1709234 146 : PheThrAlaArgIleGlyAsnAsnGluSerGluArgIleLeuProPheAsnMetTr : 164 |||:!!! !! ||||||...|||||||||:!:||||||||| ! !!|||.!.|| PheSerGluSerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTr 1706993 : TTTTCAGAAAgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTG : 1707047 165 : pLeuAsnLeuProLeuSerGlnThrProTyrTyrGluLeuSerPheIleIleGln : 183 |:!!:!!!!!||| !!!!..!|||||||||||||||:!!! !|||! ||| pIleAspPheProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln+ 1707048 : GATTGACTTTCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGg : 1707104 184 : >>>> Target Intron 1 >>>> IleValThrLeuTyrCysIleGlyIleC : 192 276 bp :!! !!! !:!! ! !:!! !!||| + ++ValPheIleValMetTyrValCysIleS 1707105 : t.........................agGTTTTTATCGTAATGTACGTTTGCATAA : 1707407 193 : ysTyrPheCysPheAspAsnValPheCysIleMetAlaIleHisLeuThrGlyGln : 210 !!|||.!!|||.!!|||||| !!.!.|||!!:!!: !:!!||| !.!! !||| erTyrLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGln 1707408 : GCTACCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAA : 1707461 211 : PheArgIleLeuGlyTyrArgPheThrLysLeuCysAspThrGluIleCysGluLy : 229 |||||||||||| !||||||.!.:!!!!.:!!|||! !.!!.!. ! !!... PheArgIleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAs 1707462 : TTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcga : 1707518 230 : sGlyAlaGluSerGlyLeuAlaLysArgValHisThrCysTyrGluLysPheLysG : 248 ...... !!...!.! ! !! !||||||! |||||||||. pLysIleSerLysLysThrProSerAsnSerAspGluCysTyrAlaLysPheLysA 1707519 : taaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAA : 1707575 249 : luHisValArgTyrHisGlnAlaLeuIleAsnPheTyrThrLysLeuGluAsnVal : 266 !. !:!!!:! ! |||||||||||||||.!.!:!! !!.!:!!|||:!!.!.||| snCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluVal 1707576 : ATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGGTG : 1707629 267 : TyrThrMetIleIleLeuGlyGlnValIleLeuPheSerValLeuIleCysLeuPh : 285 !:! !:!:.!!:!:|||!.!||||||:!:|||||||||:!!|||!!:|||||| PheGlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAs 1707630 : TTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGA : 1707686 286 : eCysTyrGlnValLeuLeu >>>> Target Intron 2 >>>> AlaAsnAl : 294 ! ! ||| :!!:!!:!! 457 bp ! !:!!.! pGlyTyr---LeuValMet++ ++GluAspTh 1707687 : TGGATAT---TTGGTGATGgt.........................agGAAGATAC : 1708167 295 : aProSerAlaArgArgSerIlePheIlePheLeuLeuIleGlyAlaMetSerLeuL : 313 !|||! ! !!:!||| !! !|||:!:|||! !|||! |||..!:!!!!!! !| rProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnL 1708168 : TCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAAC : 1708224 314 : euPheMetPheThrTyrSerCysAspGlyValIleGluGlnSerAspAsnValAla : 331 ||!!.||||||||||||||||||||| !!:!!|||..!:!!||| ||||||||| euLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAla 1708225 : TGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCC : 1708278 332 : ValGluAlaTyrSerAlaLeuTrpThrIleLeuProMetAspLysPheGlyArgMe : 350 !! !|||..!..!! !|||! ! !||||||||||||!:!! !|||||||| AsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMe 1708279 : AATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAAT : 1708335 351 : tIleArgLysAspLeuIleMetValMetGluArgSerArgArgValCysCysLeuT : 369 |:!:||||||||||||! !.!.|||!!:! !||||||||| ! !|||||||||| tLeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuT 1708336 : GCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCA : 1708392 370 : hrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrThr >>>> Targe : 384 ||||| !|||||||||||||||||||||||||||||||||:!! hrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708393 : CTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt.......... : 1708439 385 : t Intron 3 >>>> IleLeuSerThrAlaValSerTyrPheThrLeuLeuArg : 396 759 bp |||||||||||||||!.!||||||||||||||||||||| ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArg 1708440 : ...............agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTACGA : 1709232 vulgar: AfOr90 145 396 . KQ414915.1 1706992 1709234 + 563 M 37 111 5 0 2 I 0 272 3 0 2 M 105 315 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1706993 1709234 563 + . gene_id 4 ; sequence AfOr90 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1706993 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1706993 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709234 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709234 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1706993 1709234 563 + . alignment_id 4 ; Query AfOr90 ; Align 1706993 146 111 ; Align 1707380 183 315 ; Align 1707695 289 9 ; Align 1708161 292 276 ; Align 1709196 384 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr90 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 557 Query range: 145 -> 396 Target range: 1688047 -> 1690076 146 : PheThrAlaArgIleGlyAsnAsnGluSerGluArgIleLeuProPheAsnMetTr : 164 ||| !!|||!.!!!:.!!...|||:!!|||!!:|||:!!|||||||||!!.||||| PheProAlaAsnMetSerArgAsnLysSerAspArgValLeuProPheLysMetTr 1688048 : TTTCCAGCAAATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTG : 1688102 165 : pLeuAsnLeuProLeuSerGlnThrProTyrTyrGluLeuSerPheIleIleGln : 183 |:!!:!!! !|||||||||.!.||||||||||||||||||! !|||! !.!!||| pValAspTrpProLeuSerAspThrProTyrTyrGluLeuMetPheThrPheGln+ 1688103 : GGTCGATTGGCCGCTATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAGg : 1688159 184 : >>>> Target Intron 1 >>>> IleValThrLeuTyrCysIleGlyIleC : 192 179 bp :!! !:!!||| |||||| !. + ++AlaLeuCysValTyrGlnIleGlyAlaA 1688160 : t.........................agGCGCTGTGCGTGTATCAAATCGGCGCCG : 1688365 193 : ysTyrPheCysPheAspAsnValPheCysIleMetAlaIleHisLeuThrGlyGln : 210 .!|||.!!|||! !|||!.. !!||||||!!::!! !!!:|||:!!! ! !!||| laTyrIleCysSerAspThrPhePheCysMetLeuAsnMetHisValIleCysGln 1688366 : CCTATATCTGCTCCGACACGTTTTTCTGCATGCTGAACATGCACGTGATCTGCCAG : 1688419 211 : PheArgIleLeuGlyTyrArgPheThrLysLeuCysAspThrGluIleCysGluLy : 229 ||||||||||||..!||||||.!. !!!.:!!!! ..! ||| !|||:: PheArgIleLeuAsnTyrArgLeuLeuAsnMetTrpProVal---IleAspGluAr 1688420 : TTCCGTATACTAAATTACAGACTGTTGAACATGTGGCCGGTC---ATCGACGAGCG : 1688473 230 : sGlyAlaGluSerGlyLeuAlaLysArgValHisThrCysTyrGluLysPheLysG : 248 ! !!!..!:!!.!!:!! !..!:!!! !|||||| |||.!.! !! g---------ThrAsnMetThrGluTyrThrAsnLysCysTyrThrLysLeuIleA 1688474 : A---------ACGAACATGACCGAATACACGAACAAATGTTACACCAAGCTGATAG : 1688521 249 : luHisValArgTyrHisGlnAlaLeuIleAsnPheTyrThrLysLeuGluAsnVal : 266 !: !:!!!:! !!||||||:!!||||||.!.|||! !..!||||||||||||||| spCysIleLysAsnHisGlnSerLeuIleGluPheCysValLysLeuGluAsnVal 1688522 : ATTGCATCAAAAATCATCAGTCGTTGATCGAGTTCTGCGTGAAACTCGAGAACGTG : 1688575 267 : TyrThrMetIleIleLeuGlyGlnValIleLeuPheSerValLeuIleCysLeuPh : 285 ||||||:!!! !|||||||||!!.:!!:!::!!||||||:!!|||!!:|||!!! TyrThrLeuThrIleLeuGlyHisIleValValPheSerLeuLeuMetCysPheAs 1688576 : TACACGTTGACTATACTCGGCCACATAGTGGTCTTCAGCTTGTTGATGTGCTTCGA : 1688632 286 : eCysTyrGlnValLeuLeu >>>> Target Intron 2 >>>> AlaAsnAl : 294 ! |||:!!|||:!!||| 816 bp |||!!.!. pThrTyrGluValValLeu++ ++AlaLysVa 1688633 : CACGTACGAGGTAGTTCTGgt.........................agGCAAAGGT : 1689475 295 : aProSerAlaArgArgSerIlePheIlePheLeuLeuIleGlyAlaMetSerLeuL : 313 !|||!!!.!!! !||| !||||||:!!|||! !:!!||||||::!.!.! !! : lProThrThrThrArgLeuIlePheLeuPheHisMetIleGlySerPheIleHisI 1689476 : ACCTACCACGACGCGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCaca : 1689532 314 : euPheMetPheThrTyrSerCysAspGlyValIleGluGlnSerAspAsnValAla : 331 ::......|||||||||||||||! !|||:!!||||||:!!||| :!!:!!||| leIlePhePheThrTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleAla 1689533 : taattttcttcacgtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCA : 1689586 332 : ValGluAlaTyrSerAlaLeuTrpThrIleLeuProMetAspLysPheGlyArgMe : 350 ..!! !.!!|||:!!!.!:!!||||||:!!|||||||||:!!||| !!|||!:!|| ThrAlaThrTyrAlaGlyMetTrpThrValLeuProMetAsnLysValGlyLysMe 1689587 : ACAGCAACGTATGCAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAAT : 1689643 351 : tIleArgLysAspLeuIleMetValMetGluArgSerArgArgValCysCysLeuT : 369 ||||||| !:!!:!!! :!::!!! ! !|||||| !!:! !||||||:!!| tIleArgGlyAsnMetLysLeuMetThrValArgSerLeuGlnProCysCysIleT 1689644 : GATACGAGGAAATATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAA : 1689700 370 : hrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrThr >>>> Targe : 384 |||||..!|||||||||||||||||||||:!!||| !|||.!! hrAlaGlyGlyPhePheProValSerLeuLysThrAlaThrAla++ 1689701 : CTGCTGGTGGATTCTTTCCTGTCTCCTTGAAAACTGCTACCGCGgt.......... : 1689747 385 : t Intron 3 >>>> IleLeuSerThrAlaValSerTyrPheThrLeuLeuArg : 396 293 bp :!!:!!|||:!!.!!:!!|||||||||||||||:!!||| ++LeuMetSerSerThrMetSerTyrPheThrLeuMetArg 1689748 : ...............agCTAATGAGTTCCACAATGTCGTATTTCACGCTCATGAGA : 1690074 vulgar: AfOr90 145 396 . KQ414915.1 1688047 1690076 + 557 M 37 111 5 0 2 I 0 175 3 0 2 M 42 126 G 1 0 M 4 12 G 3 0 M 59 177 5 0 2 I 0 812 3 0 2 M 92 276 5 0 2 I 0 289 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688048 1690076 557 + . gene_id 5 ; sequence AfOr90 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688048 1688158 . + . KQ414915.1 exonerate:protein2genome:local exon 1688048 1688158 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688159 1688160 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688159 1688337 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1688336 1688337 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1688338 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688338 1688652 . + . insertions 0 ; deletions 4 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690076 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690076 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688048 1690076 557 + . alignment_id 5 ; Query AfOr90 ; Align 1688048 146 111 ; Align 1688338 183 126 ; Align 1688464 226 12 ; Align 1688476 233 177 ; Align 1689469 292 276 ; Align 1690038 384 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr90 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 272 Query range: 296 -> 390 Target range: 1702974 -> 1703256 297 : AlaArgArgSerIlePheIlePheLeuLeuIleGlyAlaMetSerLeuLeuPheMe : 315 ||||||||| !! !|||:!!|||! !:!!:!!|||::!:!:!!!! !|||!!.:! AlaArgArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLeuLe 1702975 : GCGAGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATTGCT : 1703029 316 : tPheThrTyrSerCysAspGlyValIleGluGlnSerAspAsnValAlaValGluA : 334 :|||||||||||||||||||||:!!||||||:!!||| |||:!!!.!..!! ! uPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaI 1703030 : ATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGA : 1703086 335 : laTyrSerAlaLeuTrpThrIleLeuProMetAspLysPheGlyArgMetIleArg : 352 !||| !!.!! !|||! ! !||||||||||||||| !||||||! !:!:||| leTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArg 1703087 : TATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGA : 1703140 353 : LysAspLeuIleMetValMetGluArgSerArgArgValCysCysLeuThrAlaAs : 371 !:!||||||! !||||||!!:! !|||||||||!:! ! !!||||||||||||!: ArgAspLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSe 1703141 : AGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAG : 1703197 372 : nGlyPhePheProValSerLeuGluThrTyrThrThrIleLeuSerThrAlaValS : 390 !|||||||||||||||||||||||||||! !||||||:!!!!!!:! !:!! !!| rGlyPhePheProValSerLeuGluThrCysThrThrValPheAsnPheSerPheS 1703198 : CGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATTTCTCATTCT : 1703254 391 : er : 390 || er 1703255 : CT : 1703256 vulgar: AfOr90 296 390 . KQ414915.1 1702974 1703256 + 272 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702975 1703256 272 + . gene_id 6 ; sequence AfOr90 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702975 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1702975 1703256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702975 1703256 272 + . alignment_id 6 ; Query AfOr90 ; Align 1702975 297 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr90 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 245 Query range: 181 -> 291 Target range: 1702013 -> 1702352 182 : GlnIleValThrLeuTyrCysIleGlyIleCysTyrPheCysPheAspAsnValPh : 200 |||:!!:!!:!!|||||| !:!!|||:!!||||||.!!||||||||||||:!!!! GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 201 : eCysIleMetAlaIleHisLeuThrGlyGlnPheArgIleLeuGlyTyrArgPheT : 219 .|||:!:||| !:!:||| !.!! !||||||||||||||| !||||||!!.: uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 220 : hrLysLeuCysAspThr<-><-><->GluIleCysGluLysGlyAlaGluSerGly : 234 !!!!.||| !!|||||| :!!:!! !!!:!!.! !:!!...:!!!.! erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1702179 235 : LeuAlaLysArgValHisThrCysTyrGluLysPheLysGluHisValArgTyrHi : 253 |||:!!::: !!.!.!.!.!||||||:!! !||||||.!. !|||||| ! || LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHi 1702180 : CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACA : 1702236 254 : sGlnAlaLeuIleAsnPheTyrThrLysLeuGluAsnValTyrThrMetIleIleL : 272 |||| !! !|||!..!:!! ! !!:!|||.!..!.:!!!:!|||:!:|||:!!| sGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValL 1702237 : TCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTAC : 1702293 273 : euGlyGlnValIleLeuPheSerValLeuIleCysLeuPheCysTyrGlnValLeu : 290 |||||!!.:!!:!!:!!||||||:!!|||||||||||| !! ! !:!||||||||| euGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeu 1702294 : TCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTC : 1702347 291 : Leu : 291 :!! Val 1702348 : GTG : 1702352 vulgar: AfOr90 181 291 . KQ414915.1 1702013 1702352 + 245 M 43 129 G 0 9 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1702352 245 + . gene_id 7 ; sequence AfOr90 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702014 1702352 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702352 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1702352 245 + . alignment_id 7 ; Query AfOr90 ; Align 1702014 182 129 ; Align 1702152 225 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr90 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 182 Query range: 146 -> 244 Target range: 1681719 -> 1682133 147 : ThrAlaArgIleGlyAsnAsnGluSerGluArgIleLeuProPheAsnMetTrpLe : 165 ||| !!.!||||||!!.!:!!!:..!|||||||||||||||||| .!. ! :! ThrGluAsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgVa 1681720 : acagaGAACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGT : 1681774 166 : u<->AsnLeuProLeuSerGlnThrProTyrTyrGluLeuSerPheIleIleGln : 183 ! ||||||||| !||| !|||||||||||||||::: |||:!:|||:!! lPheAsnLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu+ 1681775 : GTTTAACTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGg : 1681831 184 : >>>> Target Intron 1 >>>> IleValThrLeuTyrCysIleGlyIleC : 192 120 bp ! !:!!:!!:!! ! ||||||| + ++ThrLeuSerValValHisSerGlyIleC 1681832 : t.........................agACATTATCTGTGGTGCATTCGGGAATTT : 1681978 193 : ysTyrPheCysPheAspAsnValPheCysIleMetAlaIleHisLeuThrGlyGln : 210 ||!:!! !|||||||||||| !!.!.||||||:!!::!!!:|||:!! !|||||| ysPheCysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGln 1681979 : GTTTCTGTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAG : 1682032 211 : PheArgIleLeuGlyTyrArgPheThrLysLeuCysAspThrGluIleCysGluLy : 229 |||!:!|||||| ! !!!:!.!! !! !:!!! !:!|||! ...|| PheLysIleLeuGlnAsnLysLeuGlnThrValLeu---SerGluLysSerSerLy 1682033 : TTTAAGATTTTACAAAACAAACTCCAAACAGTATTG---AGTGAGAAatcttcgaa : 1682086 230 : sGlyAlaGluSerGlyLeuAlaLysArgValHisThrCysTyrGlu : 244 | ...:::|||||| !|||..! !! ! !||| :!! sGluLysSerAlaGlyLeuTyrLysGluPheLysGluCysValGln 1682087 : agaaaaatcagctGGACTGTATAAAGAGTTCAAGGAGTGCGTACAG : 1682133 vulgar: AfOr90 146 244 . KQ414915.1 1681719 1682133 + 182 M 19 57 G 0 3 M 17 51 5 0 2 I 0 116 3 0 2 M 40 120 G 1 0 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681720 1682133 182 + . gene_id 8 ; sequence AfOr90 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681720 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681720 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682133 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682133 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1681720 1682133 182 + . alignment_id 8 ; Query AfOr90 ; Align 1681720 147 57 ; Align 1681780 166 51 ; Align 1681951 183 120 ; Align 1682071 224 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr90 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 284 -> 396 Target range: 1682517 -> 1683051 285 : PheCysTyrGlnValLeuLeuAlaAsnAlaProSerAlaArgArgSerIlePheIl : 303 ||| ::: ||| !!.!|||!.! !! ! !!:!|||! !:!:|||:! PheLeuPhePheVal***LysValAsnGlyValLeuMetLysArgLeuLeuPheLe 1682518 : tttcttttctttgtttaaaaGGTGAACGGTGTATTGATGAAACGATTGTTGTTCCT : 1682572 304 : ePheLeuLeuIleGlyAlaMetSerLeuLeuPheMetPheThrTyrSerCysAspG : 322 ! !! !!!!:!!|||!.!:!!! :::|||:::...||| !:!|||:!!! uAsnTyrPheLeuGlyGlyValIleGlnIlePheLeuIleThrLeuAsnCysAsnA 1682573 : AAATTACTTTCTCGGTGGAGTGATacagatatttttaataacccTAAATTGCAACG : 1682629 323 : lyValIleGluGlnSerAspAsnValAlaValGluAlaTyrSerAlaLeuTrpThr : 340 !:!!!!:|||||||||! ! !:!!!.!..!! ! !||||||..! !||| ! spIleMetGluGlnSerGlyAlaIleGlyThrAlaIleTyrSerCysAsnTrpGlu 1682630 : ACATAATGGAGCAAAGTGGCGCTATAGGAACAGCGATCTACAGTTGTAATTGGGAG : 1682683 341 : IleLeuProMetAspLysPheGlyArgMetIleArgLysAspLeuIleMetValMe : 359 ! ::: ||| ..!.!!|||||||||:!!!!:!!:||||| ArgAsnValTyrAsnHisPhe---TyrGlnPheArgLysAspMetMetIleValMe 1682684 : AGGAAtgtttataatcatttt---taccAGTTCAGAAAGGATATGATGATTGTAAT : 1682737 360 : tGluArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePheProValSerL : 378 |! !|||:!!!:!||| !|||! !:!!:!!||| !|||||||||:!!|||| tValArgAlaLysArgProCysTyrIleSerAlaAlaLysPhePheProIleSerL 1682738 : GGTACGAGCGAAACGTCCTTGCTACATTTCAGCAGCGAAATTCTTTCCAATCTCCC : 1682794 379 : euGluThrTyrThrThr >>>> Target Intron 1 >>>> IleLeuSerT : 387 |||||:!!!:!|||! 201 bp :!:||||||. euGluSerPheThrLys++ ++ValLeuSerA 1682795 : TTGAATCGTTCACGAaggt.........................agGTGTTAAGTG : 1683022 388 : hrAlaValSerTyrPheThrLeuLeuArg : 396 !!.!!!.!||||||!:!|||||||||||| laThrAlaSerTyrTyrThrLeuLeuArg 1683023 : CAACAGCATCTTATTATACACTGCTGCGT : 1683051 vulgar: AfOr90 284 396 . KQ414915.1 1682517 1683051 + 178 M 63 189 G 1 0 M 35 105 5 0 2 I 0 197 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682518 1683051 178 + . gene_id 9 ; sequence AfOr90 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1682518 1682811 . + . KQ414915.1 exonerate:protein2genome:local exon 1682518 1682811 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1682812 1682813 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1682812 1683012 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1683011 1683012 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1683013 1683051 . + . KQ414915.1 exonerate:protein2genome:local exon 1683013 1683051 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1682518 1683051 178 + . alignment_id 9 ; Query AfOr90 ; Align 1682518 285 189 ; Align 1682707 349 105 ; Align 1683013 384 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr90 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 5 -> 59 Target range: 1692094 -> 1692256 6 : AspIleSerValAsnLeuSerSerPhePheLeuLysSerIleGlyLeuTrpIleAl : 24 |||||||||:!! !! !|||! !|||!!.:!!|||! !:!!|||||||||:!!|| AspIleSerIleValTrpSerPhePheLeuMetLysIleValGlyLeuTrpLeuAl 1692095 : GATATCTCGATCGTTTGGTCGTTCTTTTTGATGAAAATCGTAGGTCTGTGGCTAGC : 1692149 25 : aAspAspSerThrAspGluArgArgArgLysGlyMetLeuAlaTyrThrValTrpC : 43 |! !|||..!.!!!!::!!|||||||||!!. ! !||| !||||||:!! . aAlaAspGluAlaGluGlnArgArgArgAsnPheAlaLeuIleTyrThrLeuAsnA 1692150 : CGCCGACGAGGCTGAACAACGTCGGAGAAATTTCGCGCTGATTTACACGCTGAACG : 1692206 44 : ysThrPhePheSerThrValIleThrSerArgAspLeuTyrPheThrTrp : 59 ..! !|||.!!:!!:!! !|||.!!! !||||||:!!|||!:!:!!||| laIlePheIleAlaSerCysIleAlaMetArgAspIleTyrTyrSerTrp 1692207 : CGATTTTTATCGCTTCGTGTATAGCAATGAGAGATATATACTATTCCTGG : 1692256 vulgar: AfOr90 5 59 . KQ414915.1 1692094 1692256 + 130 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1692095 1692256 130 + . gene_id 10 ; sequence AfOr90 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1692095 1692256 . + . KQ414915.1 exonerate:protein2genome:local exon 1692095 1692256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1692095 1692256 130 + . alignment_id 10 ; Query AfOr90 ; Align 1692095 6 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr74/86like_1 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 949 Query range: 25 -> 361 Target range: 1687371 -> 1690091 26 : PheAsnTyrCysMetPheIleIleSerAsnLeuLeuIleValIleLeuSerLeuSe : 44 |||...:!!|||!!:|||:!:! !!!!||| !||| !:!!:!!|||:!!:!!! PheGlnHisCysIlePheLeuThrCysAsnThrLeuCysIleLeuLeuAlaIlePh 1687372 : tttcagcATTGCATCTTTCTGACTTGCAACACACTGTGCATTCTTCTGGCGATATT : 1687426 45 : rLysPheIleIleLeuSerPheArgArgArgGluPheValLysIleIleLeuTyrA : 63 !|||.!!.!!||||||||| !!.!|||! !|||||| !:!!|||:!!||||||| eLysIlePheIleLeuSerAsnHisArgThrGluPheLysGluIleValLeuTyrA 1687427 : TAAGATTTTCATACTAAGCAATCACAGAACGGAATTCAAGGAGATAGTCTTGTACG : 1687483 64 : laGlnLysAsnPheTrpHisTyrLysTyrGluAsnTyrGluLysLeuLeuPheMet : 81 ||||||||:!!||||||||| !!!!.|||...!!. ! |||!:!:!!|||!:! laGlnLysHisPheTrpHisAspAsnTyrSerLysGluGluArgValLeuTyrGly 1687484 : CGCAGAAGCATTTTTGGCATGATAATTACAGCAAAGAGGAGAGGGTGCTTTATGGA : 1687537 82 : LysCysGlnThrPheCysLysPheTrpThrIleIleAlaTyrPhePheValGlnSe : 100 ! ||||||! !|||||||||.!.|||..!|||:!! !! !|||.!!..!|||:! AspCysGlnArgPheCysLysLeuTrpValIleLeuIleCysPheLeuThrGlnAl 1687538 : GATTGCCAGAGGTTCTGCAAACTATGGGTCATACTAATATGTTTCCTTACGCAAGC : 1687594 101 : rCysIlePhePheTyrValIleThrProPheTyr{V} >>>> Target Intro : 112 !! !:!! ! |||||| !!:!!||||||.!! !{!} 424 bp aSerLeuValPheTyrPheValThrProLeuThr{A}++ 1687595 : CTCTTTAGTGTTCTACTTTGTCACACCACTCACT{G}gt................. : 1687633 113 : n 1 >>>> {al}AsnTyrGlyLysAsnLysSerGluArgThrLeuProValArg : 126 {.!}||| .!!::!|||||||||!!:|||..!|||||| !!!:! ++{la}AsnMetSerArgAsnLysSerAspArgValLeuProPheLys 1687634 : ........ag{CA}AATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTCAAA : 1688096 127 : MetTrpIleAspIleProLeuSerThrThrProTyrTyrGluLeuLeuPheAlaSe : 145 ||||||:!!||| ||||||||| !||||||||||||||||||:!!|||.!!! MetTrpValAspTrpProLeuSerAspThrProTyrTyrGluLeuMetPheThrPh 1688097 : ATGTGGGTCGATTGGCCGCTATCCGACACACCGTATTACGAGTTGATGTTCACTTT : 1688153 146 : rGln >>>> Target Intron 2 >>>> LeuIleAlaLeuGlnGlnIleGl : 154 !||| 179 bp !:!:..!:!! ! |||||||| eGln++ ++AlaLeuCysValTyrGlnIleGl 1688154 : TCAGgt.........................agGCGCTGTGCGTGTATCAAATCGG : 1688359 155 : yLeuThrTyrLeuSerAsnAspAsnTyrLeuCysValLeuSerMetHisLeuAsnT : 173 | !.!!|||:!!!!!::!|||!..!:!!!!|||:!!|||!:!||||||:!!! !! yAlaAlaTyrIleCysSerAspThrPhePheCysMetLeuAsnMetHisValIleC 1688360 : CGCCGCCTATATCTGCTCCGACACGTTTTTCTGCATGCTGAACATGCACGTGATCT : 1688416 174 : yrGlnPheArgIleLeuGlnHisArgMetLeuThrIleTrpSerAsnIleLysGlu : 191 !|||||||||||||||.!.:!!|||:!!|||!.!!!:||| !! !||| ! ||| ysGlnPheArgIleLeuAsnTyrArgLeuLeuAsnMetTrpProValIleAspGlu 1688417 : GCCAGTTCCGTATACTAAATTACAGACTGTTGAACATGTGGCCGGTCATCGACGAG : 1688470 192 : GlnLysAspIleValSerCysThrGluLysCysTyrLysAlaLeuLysLysCysIl : 210 !:!! !:!!!!:..!..!! !|||.!.|||||||||! !|||! ! ! ||||| ArgThrAsnMetThrGluTyrThrAsnLysCysTyrThrLysLeuIleAspCysIl 1688471 : CGAACGAACATGACCGAATACACGAACAAATGTTACACCAAGCTGATAGATTGCAT : 1688527 211 : eLysGlnHisGlnSerLeuLeuLysTyrCysLysLysLeuAspTyrValTyrThrL : 229 ||||.!.||||||||||||:!!:!!!:!||| !||||||!!: !!|||||||||| eLysAsnHisGlnSerLeuIleGluPheCysValLysLeuGluAsnValTyrThrL 1688528 : CAAAAATCATCAGTCGTTGATCGAGTTCTGCGTGAAACTCGAGAACGTGTACACGT : 1688584 230 : euThrIleLeuAsnHisValIleValPheSerLeuIleMetCysIleAlaPheTyr : 247 |||||||||||..!|||:!!:!:||||||||||||:!:||||||.!!! ! ||| euThrIleLeuGlyHisIleValValPheSerLeuLeuMetCysPheAspThrTyr 1688585 : TGACTATACTCGGCCACATAGTGGTCTTCAGCTTGTTGATGTGCTTCGACACGTAC : 1688638 248 : GluIleLeuIle >>>> Target Intron 3 >>>> AlaAspValProLeu : 256 |||:!!:!!:!: 816 bp ||| ! |||||| ! GluValValLeu++ ++AlaLysValProThr 1688639 : GAGGTAGTTCTGgt.........................agGCAAAGGTACCTACC : 1689481 257 : ThrThrArgPheIlePheValPheSerGlyIleGlyIleLeuValHisIleLeuPh : 275 |||||||||.!!||||||:!!||| ! !||||||! !!!!:!!||||||:::|| ThrThrArgLeuIlePheLeuPheHisMetIleGlySerPheIleHisIleIlePh 1689482 : ACGACGCGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCacataatttt : 1689538 276 : ePheThrTyrIleCysGlyGluLeuIleGluGluSerGlyAsnValGlyLeuAlaT : 294 ||||||||||! !||||||! ||||||||||||||| !:!!:!!!.! !|||| ePheThrTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleAlaThrAlaT 1689539 : cttcacgtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCAACAGCAA : 1689595 295 : hrTyrSerGlyTrpTrpThrThrLeuProMetAsnLysThrGlyLysMetLeuArg : 312 |||||:!!||| !||||||..!|||||||||||||||..!|||||||||:!!||| hrTyrAlaGlyMetTrpThrValLeuProMetAsnLysValGlyLysMetIleArg 1689596 : CGTATGCAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAATGATACGA : 1689649 313 : AsnAspMetLysIleIleMetMetLysCysMetArgProCysTyrLeuSerAlaGl : 331 ...:!!||||||:!!!!:! :!:!:!! :!!!:!||||||! !:!!!!!||||| GlyAsnMetLysLeuMetThrValArgSerLeuGlnProCysCysIleThrAlaGl 1689650 : GGAAATATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAACTGCTGG : 1689706 332 : yGlyPhePheProValSerLeuGluThrSerThrSer >>>> Target Intro : 344 ||||||||||||||||||||||:!!|||:!!|||:!! 293 bp yGlyPhePheProValSerLeuLysThrAlaThrAla++ 1689707 : TGGATTCTTTCCTGTCTCCTTGAAAACTGCTACCGCGgt................. : 1689747 345 : n 4 >>>> LeuIleSerSerThrValSerTyrPheThrLeuLeuArgAspAsnV : 359 |||!!:|||||||||:!!|||||||||||||||:!!|||!!:!.. ++LeuMetSerSerThrMetSerTyrPheThrLeuMetArgGluArgS 1689748 : ........agCTAATGAGTTCCACAATGTCGTATTTCACGCTCATGAGAGAGAGAT : 1690083 360 : alGluGlu : 361 !! ||| erAlaGlu 1690084 : CGGCTGAA : 1690091 vulgar: AfOr74/86like_1 25 361 . KQ414915.1 1687371 1690091 + 949 M 86 258 S 0 1 5 0 2 I 0 420 3 0 2 S 1 2 M 34 102 5 0 2 I 0 175 3 0 2 M 105 315 5 0 2 I 0 812 3 0 2 M 92 276 5 0 2 I 0 289 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1687372 1690091 949 + . gene_id 1 ; sequence AfOr74/86like_1 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1687372 1687630 . + . KQ414915.1 exonerate:protein2genome:local exon 1687372 1687630 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1687631 1687632 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1687631 1688054 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1688053 1688054 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1688055 1688158 . + . KQ414915.1 exonerate:protein2genome:local exon 1688055 1688158 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688159 1688160 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688159 1688337 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1688336 1688337 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1688338 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688338 1688652 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690091 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690091 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1687372 1690091 949 + . alignment_id 1 ; Query AfOr74/86like_1 ; Align 1687372 26 258 ; Align 1688057 113 102 ; Align 1688338 147 315 ; Align 1689469 252 276 ; Align 1690038 344 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr74/86like_1 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 498 Query range: 109 -> 361 Target range: 1706992 -> 1709249 110 : PheTyrValAsnTyrGlyLysAsnLysSerGluArgThrLeuProValArgMetTr : 128 |||! ! !!:: |||||||||:::|||:!:|||! !||| !|||!.!.!.|| PheSerGluSerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTr 1706993 : TTTTCAGAAAgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTG : 1707047 129 : pIleAspIleProLeuSerThrThrProTyrTyrGluLeuLeuPheAlaSerGln : 147 |||||||.!!||| !!!!! !|||||||||||||||:!!||||||.!!|||||| pIleAspPheProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln+ 1707048 : GATTGACTTTCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGg : 1707104 148 : >>>> Target Intron 1 >>>> LeuIleAlaLeuGlnGlnIleGlyLeuT : 156 276 bp :!!.!! !:!!..! ! :!! !!:!!! + ++ValPheIleValMetTyrValCysIleS 1707105 : t.........................agGTTTTTATCGTAATGTACGTTTGCATAA : 1707407 157 : hrTyrLeuSerAsnAspAsnTyrLeuCysValLeuSerMetHisLeuAsnTyrGln : 174 :!||||||!!!! !||||||!:!||||||:!!:!!!:!:!:||| ! ! !||| erTyrLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGln 1707408 : GCTACCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAA : 1707461 175 : PheArgIleLeuGlnHisArgMetLeuThrIleTrpSer<-><-><-><->AsnIl : 189 |||||||||||||||:!!|||:!!! !!.!:!:!! .!! !:: PheArgIleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAs 1707462 : TTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcga : 1707518 190 : eLysGluGlnLysAspIleValSerCysThrGluLysCysTyrLysAlaLeuLysL : 208 ||| ...||| !||| !:!!!!::!!|||||| !!!!|||! pLysIleSerLysLysThrProSerAsnSerAspGluCysTyrAlaLysPheLysA 1707519 : taaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAA : 1707575 209 : ysCysIleLysGlnHisGlnSerLeuLeuLysTyrCysLysLysLeuAspTyrVal : 226 !.||||||:!!|||||||||:!!|||:!!:!!||||||!!.:!!|||.!. ! ||| snCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluVal 1707576 : ATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGGTG : 1707629 227 : TyrThrLeuThrIleLeuAsnHisValIleValPheSerLeuIleMetCysIleAl : 245 !:! !||| !:!:||| !!.|||:!::!!|||||||||:!!||||||:!!! PheGlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAs 1707630 : TTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGA : 1707686 246 : aPheTyrGluIleLeuIle >>>> Target Intron 2 >>>> AlaAspVa : 254 ! ||| :!::!!!!: 457 bp ! !|||.. pGlyTyr---LeuValMet++ ++GluAspTh 1707687 : TGGATAT---TTGGTGATGgt.........................agGAAGATAC : 1708167 255 : lProLeuThrThrArgPheIlePheValPheSerGlyIleGlyIleLeuValHisI : 273 !|||:!!! ! !|||.!!! !|||:!!||| ! !! ||| !||| !!!.: rProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnL 1708168 : TCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAAC : 1708224 274 : leLeuPhePheThrTyrIleCysGlyGluLeuIleGluGluSerGlyAsnValGly : 291 !:|||.!.|||||||||! !|||! ! ||||||..!|||||| !||||||!.! euLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAla 1708225 : TGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCC : 1708278 292 : LeuAlaThrTyrSerGlyTrpTrpThrThrLeuProMetAsnLysThrGlyLysMe : 310 !|||! !|||..! !!! !|||! ! !|||||||||:!!!:!:!!|||::!|| AsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMe 1708279 : AATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAAT : 1708335 311 : tLeuArgAsnAspMetLysIleIleMetMetLysCysMetArgProCysTyrLeuS : 329 |||||||!!.|||:!!! !.!!:!!!!: !:!! !! !||||||! !|||! tLeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuT 1708336 : GCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCA : 1708392 330 : erAlaGlyGlyPhePheProValSerLeuGluThrSerThrSer >>>> Targe : 344 !!||| !!|||||||||||||||||||||||||||! !|||||| hrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708393 : CTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt.......... : 1708439 345 : t Intron 3 >>>> LeuIleSerSerThrValSerTyrPheThrLeuLeuArg : 356 759 bp :!!:!!|||!!!.!!!.!||||||||||||||||||||| ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArg 1708440 : ...............agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTACGA : 1709232 357 : AspAsnValGluGlu : 361 ! .!.! !! !||| LysGlnGluAlaGlu 1709233 : AAACAAGAAGCAGAA : 1709249 vulgar: AfOr74/86like_1 109 361 . KQ414915.1 1706992 1709249 + 498 M 37 111 5 0 2 I 0 272 3 0 2 M 41 123 G 0 12 M 60 180 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1706993 1709249 498 + . gene_id 2 ; sequence AfOr74/86like_1 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1706993 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1706993 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 12 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709249 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709249 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1706993 1709249 498 + . alignment_id 2 ; Query AfOr74/86like_1 ; Align 1706993 110 111 ; Align 1707380 147 123 ; Align 1707515 188 180 ; Align 1707695 249 9 ; Align 1708161 252 276 ; Align 1709196 344 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr74/86like_1 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 393 Query range: 112 -> 356 Target range: 1681725 -> 1683051 113 : AsnTyrGlyLysAsnLysSerGluArgThrLeuProValArgMetTrpIle<->As : 130 ||| !||||||!:! ! ..!||||||! !|||||| !!! !.!. ! :!: :! AsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAs 1681726 : AACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAA : 1681780 131 : pIleProLeuSerThrThrProTyrTyrGluLeuLeuPheAlaSerGln >>>> : 147 !:!:||| !||| !|||||||||||||||:::||||||!.!! !:!! nLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681781 : CTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt..... : 1681833 148 : Target Intron 1 >>>> LeuIleAlaLeuGlnGlnIleGlyLeuThrTyrL : 158 120 bp !:!!:!!:!! !!!. |||:!! !!:!! ++ThrLeuSerValValHisSerGlyIleCysPheC 1681834 : ....................agACATTATCTGTGGTGCATTCGGGAATTTGTTTCT : 1681984 159 : euSerAsnAspAsnTyrLeuCysValLeuSerMetHisLeuAsnTyrGlnPheArg : 176 !!!! !||||||!:!||||||:!!||||||||||||:!!..! ||||||!:! ysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLys 1681985 : GTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAG : 1682038 177 : IleLeuGlnHisArgMetLeuThrIleTrpSerAsnIleLysGluGlnLysAspIl : 195 |||||||||:!!!:!:!:! !|||:!!! !||| :!!|||... IleLeuGlnAsnLysLeuGlnThrValLeuSer------------GluLysSerSe 1682039 : ATTTTACAAAACAAACTCCAAACAGTATTGAGT------------GAGAAatcttc : 1682083 196 : eValSerCysThrGluLysCysTyrLysAlaLeuLysLysCysIleLysGlnHisG : 214 ... ::: ! ||||||! !!!!|||:!!|||:!!:!! ! |||! rLysGluLysSerAlaGlyLeuTyrLysGluPheLysGluCysValGlnTyrHisH 1682084 : gaaagaaaaatcagctGGACTGTATAAAGAGTTCAAGGAGTGCGTACAGTATCATC : 1682140 215 : lnSerLeuLeuLysTyrCysLysLysLeuAspTyrValTyrThrLeuThrIleLeu : 232 !.! !||||||..!||| :::||||||:::||||||!:! !:!! !!:!::!! isLeuLeuLeuSerTyrValGluLysLeuGluTyrValPheCysValProLeuMet 1682141 : ATTTGCTTCTTTCGtacgtggaaaaattggaatacgTATTTTGTGTCCCGTTGATG : 1682194 233 : AsnHisValIleValPheSerLeuIleMetCysIleAlaPheTyrGluIleLeuIl : 251 ! !!!.:!!:!:|||! !|||:!!:!!:!!|||:!!:!! !:!:!!:!!! !:! IleGlnLeuLeuValSerSerIleValLeuCysValSerGlyPheGlnLeuSerLe 1682195 : ATTCAATTGCTGGTGTCTAGCATAGTTCTGTGCGTCTCGGGGTTTCAACTATCATT : 1682251 252 : e >>>> Target Intron 2 >>>> AlaAspValProLeuThrThrArgPh : 260 : 285 bp !.!:!!! ! !|||! !! !|||!! u++ ++ValAsnGlyValLeuMetLysArgLe 1682252 : Ggt.........................agGTGAACGGTGTATTGATGAAACGATT : 1682563 261 : eIlePheValPheSerGlyIleGlyIleLeuValHisIleLeuPhePheThrTyrI : 279 .:!:|||:!! !! ! !:!!||| !:!!:!:...|||.........||| ! uLeuPheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePheLeuIleThrLeuA 1682564 : GTTGTTCCTAAATTACTTTCTCGGTGGAGTGATacagatatttttaataacccTAA : 1682620 280 : leCysGlyGluLeuIleGluGluSerGlyAsnValGlyLeuAlaThrTyrSerGly : 297 !|||..!!!::!!!!:|||:!!|||||| !:!!||| !|||! !|||||| !! snCysAsnAspIleMetGluGlnSerGlyAlaIleGlyThrAlaIleTyrSerCys 1682621 : ATTGCAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAGCGATCTACAGTTGT : 1682674 298 : TrpTrpThrThrLeuProMetAsnLysThrGlyLysMetLeuArgAsnAspMetLy : 316 ||| !! ! ||| ..!!!!|||!!.||||||! AsnTrpGluArgAsnValTyrAsnHisPhe---TyrGlnPheArgLysAspMetMe 1682675 : AATTGGGAGAGGAAtgtttataatcatttt---taccAGTTCAGAAAGGATATGAT : 1682728 317 : sIleIleMetMetLysCysMetArgProCysTyrLeuSerAlaGlyGlyPhePheP : 335 !|||:!!|||:!:::!...! ||||||||||||:!!||||||!.! !||||||| tIleValMetValArgAlaLysArgProCysTyrIleSerAlaAlaLysPhePheP 1682729 : GATTGTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGCAGCGAAATTCTTTC : 1682785 336 : roValSerLeuGluThrSerThrSer >>>> Target Intron 3 >>>> L : 344 ||:!!|||||||||:!!! !|||!.. 201 bp : roIleSerLeuGluSerPheThrLys++ ++V 1682786 : CAATCTCCCTTGAATCGTTCACGAaggt.........................agG : 1683013 345 : euIleSerSerThrValSerTyrPheThrLeuLeuArg : 356 !!:!!|||:!!|||!.!||||||!:!|||||||||||| alLeuSerAlaThrAlaSerTyrTyrThrLeuLeuArg 1683014 : TGTTAAGTGCAACAGCATCTTATTATACACTGCTGCGT : 1683051 vulgar: AfOr74/86like_1 112 356 . KQ414915.1 1681725 1683051 + 393 M 17 51 G 0 3 M 17 51 5 0 2 I 0 116 3 0 2 M 41 123 G 4 0 M 60 180 5 0 2 I 0 281 3 0 2 M 56 168 G 1 0 M 35 105 5 0 2 I 0 197 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681726 1683051 393 + . gene_id 3 ; sequence AfOr74/86like_1 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681726 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681726 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682253 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682253 . + . insertions 0 ; deletions 4 KQ414915.1 exonerate:protein2genome:local splice5 1682254 1682255 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1682254 1682538 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1682537 1682538 . + . intron_id 1 ; splice_site "aG" KQ414915.1 exonerate:protein2genome:local cds 1682539 1682811 . + . KQ414915.1 exonerate:protein2genome:local exon 1682539 1682811 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1682812 1682813 . + . intron_id 3 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1682812 1683012 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1683011 1683012 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1683013 1683051 . + . KQ414915.1 exonerate:protein2genome:local exon 1683013 1683051 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681726 1683051 393 + . alignment_id 3 ; Query AfOr74/86like_1 ; Align 1681726 113 51 ; Align 1681780 130 51 ; Align 1681951 147 123 ; Align 1682074 192 180 ; Align 1682539 252 168 ; Align 1682707 309 105 ; Align 1683013 344 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr74/86like_1 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 333 Query range: 198 -> 356 Target range: 1702193 -> 1703647 199 : ThrGluLysCysTyrLysAlaLeuLysLysCysIleLysGlnHisGlnSerLeuLe : 217 .!!|||!!.||||||||||||!!!|||!!.|||:!!::!|||||||||!:!! !:! AlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHisGlnAsnHisIl 1702194 : GCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCATAT : 1702248 218 : uLysTyrCysLysLysLeuAspTyrValTyrThrLeuThrIleLeuAsnHisValI : 236 !! !|||||| ! !:!|||:!! ! :!!!:!|||:!!! !:!!|||...|||:!!: eThrTyrCysHisArgLeuAsnGluIlePheThrValIleValLeuGlyHisIleL 1702249 : CACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTACTCGGACACATAC : 1702305 237 : leValPheSerLeuIleMetCysIleAlaPheTyrGluIleLeuIleAlaAspVal : 254 !!||||||||||||:!:!!:|||:!:!.! !:!:!!:!:|||:!:!.! ! !! euValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeuValValArgPhe 1702306 : TTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTCGTGGTACGTTTC : 1702359 255 : {P} >>>> Target Intron 1 >>>> {ro}LeuThrThrArgPheIlePh : 262 { } 613 bp {!!} ! ! !! !|||:!!|| {A}-+ ++{la}ArgArgLeuThrPheValPh 1702360 : {G}tt.........................ag{CG}AGGCGGCTTACTTTCGTATT : 1702996 263 : eValPheSerGlyIleGlyIleLeuValHisIleLeuPhePheThrTyrIleCysG : 281 | !.!. !||| ! !||| !!!.:!!|||.!.|||||||||! !|||! eHisIleValGly------SerLeuCysGlnLeuLeuLeuPheThrTyrSerCysA 1702997 : TCACATAGTCGGT------AGTCTATGCCAACTATTGCTATTTACCTATAGCTGCG : 1703047 282 : lyGluLeuIleGluGluSerGlyAsnValGlyLeuAlaThrTyrSerGlyTrpTrp : 299 !! ||||||||||||||| !|||:!!||| !|||! !||| !||| ||| spGlyLeuIleGluGluSerThrAsnIleGlyThrAlaIleTyrLeuGlyProTrp 1703048 : ACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGATATACCTCGGGCCTTGG : 1703101 300 : ThrThrLeuProMetAsnLysThrGlyLysMetLeuArgAsnAspMetLysIleIl : 318 ! ! !|||||||||:!!|||.!!|||!:!! !||||||!..|||:!!! !!!::! IleHisLeuProMetAspLysAlaGlyArgArgLeuArgArgAspLeuThrMetVa 1703102 : ATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGAAGAGACTTGACAATGGT : 1703158 319 : eMetMetLysCysMetArgProCysTyrLeuSerAlaGlyGlyPhePheProValS : 337 !!!::!:!:!! ! !:! !! !!! !|||!!!|||.!!|||||||||||||||| lIleValArgSerArgLysSerSerCysLeuThrAlaSerGlyPhePheProValS 1703159 : CATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAGCGGATTCTTTCCTGTTT : 1703215 338 : erLeuGluThrSerThrSer >>>> Target Intron 2 >>>> LeuIleS : 346 |||||||||||!!!|||!!! 373 bp :!!:!!| erLeuGluThrCysThrThr++ ++ValLeuS 1703216 : CGCTGGAAACTTGTACCACGgt.........................agGTGCTCA : 1703615 347 : erSerThrValSerTyrPheThrLeuLeuArg : 356 ||!!!.!!:!!||||||||||||||||||||| erThrAlaMetSerTyrPheThrLeuLeuArg 1703616 : GTACAGCGATGTCATACTTCACTTTATTAAGG : 1703647 vulgar: AfOr74/86like_1 198 356 . KQ414915.1 1702193 1703647 + 333 M 56 168 S 0 1 5 0 2 I 0 609 3 0 2 S 1 2 M 11 33 G 2 0 M 75 225 5 0 2 I 0 369 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702194 1703647 333 + . gene_id 4 ; sequence AfOr74/86like_1 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702194 1702362 . + . KQ414915.1 exonerate:protein2genome:local exon 1702194 1702362 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1702363 1702364 . + . intron_id 1 ; splice_site "TT" KQ414915.1 exonerate:protein2genome:local intron 1702363 1702975 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702974 1702975 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1702976 1703235 . + . KQ414915.1 exonerate:protein2genome:local exon 1702976 1703235 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local splice5 1703236 1703237 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1703236 1703608 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1703607 1703608 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1703609 1703647 . + . KQ414915.1 exonerate:protein2genome:local exon 1703609 1703647 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702194 1703647 333 + . alignment_id 4 ; Query AfOr74/86like_1 ; Align 1702194 199 168 ; Align 1702978 256 33 ; Align 1703011 269 225 ; Align 1703609 344 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr74/86like_1 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 214 Query range: 103 -> 185 Target range: 1711210 -> 1712002 104 : PheTyrValIleThrProPheTyrValAsnTyrGlyLysAsnLysSerGluArgTh : 122 ||| !:!! !|||! ! !!! |||||| !|||!:!|||:!!|||!!:|||! PheArgLeuAspThrArgValSerValAsnIleGlyArgAsnGluSerAspArgIl 1711211 : TTTCGTCTCGATACTCGTGTTTCAGTGAATATTGGAAGAAACGAATCCGACAGAAT : 1711265 123 : rLeuProValArgMetTrpIleAspIleProLeuSerThrThrProTyrTyrGluL : 141 !|||||| !!!:!|||||||||||||||||| !|||! !|||||||||:::|||: eLeuProPheLysMetTrpIleAspIleProThrSerMetThrProTyrPheGluI 1711266 : ACTGCCGTTTAAAATGTGGATTGATATACCGACATCGATGACACcgtattttgaaa : 1711322 142 : euLeuPheAlaSerGln >>>> Target Intron 1 >>>> LeuIleAlaL : 150 ::...|||...! !||| 546 bp :!!:!!:!! lePhePheThrLeuGln++ ++ValLeuSerA 1711323 : tattcttcaccTTACAGgt.........................agGTTTTATCCG : 1711895 151 : euGlnGlnIleGlyLeuThrTyrLeuSerAsnAspAsnTyrLeuCysValLeuSer : 168 ! ! |||||||||:!!!:!||| !!!! !|||||| !||||||:!!:!!!:! laTyrGlnIleGlyValSerTyrGlyCysPheAspAsnValLeuCysIleMetAsn 1711896 : CGTATCAAATTGGCGTGAGTTACGGTTGCTTCGACAACGTTCTATGCATCATGAAC : 1711949 169 : MetHisLeuAsnTyrGlnPheArgIleLeuGlnHisArgMetLeuThrIle : 185 :!:|||||| ! !||||||||||||||||||||||||:!!:!!!.!||| LeuHisLeuAlaThrGlnPheArgIleLeuGlnHisArgLeuValAsnIle 1711950 : CTACACTTGGCCACTCAGTTTCGAATACTGCAACATAGACTGGTGAATATA : 1712002 vulgar: AfOr74/86like_1 103 185 . KQ414915.1 1711210 1712002 + 214 M 43 129 5 0 2 I 0 542 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711211 1712002 214 + . gene_id 5 ; sequence AfOr74/86like_1 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1711211 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711211 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712002 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712002 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711211 1712002 214 + . alignment_id 5 ; Query AfOr74/86like_1 ; Align 1711211 104 129 ; Align 1711886 147 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr74/86like_1 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 211 Query range: 111 -> 251 Target range: 1699031 -> 1699953 112 : ValAsnTyrGlyLysAsnLysSerGluArgThrLeuProValArgMetTrpIleAs : 130 ...||| |||:::|||!..|||!!:|||..!|||||| !!!.!||||||:!!|| AlaAsnIleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTrpValAs 1699032 : gcaaatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTGGGTTGA : 1699086 131 : pIleProLeuSerThrThrProTyrTyrGluLeuLeuPheAlaSerGln >>>> : 147 |:!:|||||||||..!:!!||| ||||||:!!:!!|||!.! !||| pLeuProLeuSerValSerProThrTyrGluIleValPheValLeuGln++ 1699087 : TTTGCCGCTGTCTGTGTCACCAACGTACGAAATAGTGTTCGTGCTTCAGgt..... : 1699139 148 : Target Intron 1 >>>> LeuIleAlaLeuGlnGlnIleGlyLeuThrTyrL : 158 499 bp :!!:!::!!||| ! !!.:!!|||:!! !|||: ++ValLeuSerLeuTyrHisValGlyValCysTyrI 1699140 : ....................agGTTCTGTCTTTGTACCACGTTGGTGTATGTTACA : 1699669 159 : euSerAsnAspAsnTyrLeuCysValLeuSerMetHisLeuAsnTyrGlnPheArg : 176 !!!!! !|||||| !||||||:!!:!!!:!:!!||| ! ! !||||||||| leCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArg 1699670 : TTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGT : 1699723 177 : IleLeuGlnHisArgMetLeuThrIleTrpSerAsnIleLysGluGlnLysAspIl : 195 |||||||||:!!|||:!:! !!.!:!: ! ..!!..! !!:!:!!||| !||| IleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAspAs 1699724 : ATACTGCAATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGA : 1699780 196 : eValSerCysThrGluLysCysTyrLysAlaLeuLysLysCysIleLysGlnHisG : 214 ! !..!! !!:!! ! ! !::: ! !:!!!!.||| !||| ! !: pAsnGluSerSerAlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheL 1699781 : CAATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTA : 1699837 215 : lnSerLeuLeuLys<->TyrCysLysLysLeuAspTyrValTyrThrLeuThrIle : 231 !!!:!! !:!!::! :!! !!. ! :!! ||| !:!!! !|||!.! ! ysAsnCysValArgGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGlu 1699838 : AAAATTGCGTACGACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAA : 1699891 232 : LeuAsnHisValIleValPheSerLeuIleMetCysIleAlaPheTyrGluIleLe : 250 :!! ! |||||||||.!!.!!! !|||:!: !.!!::!.!! ! !|| IlePheThrValIleValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLe 1699892 : ATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCT : 1699948 251 : uIle : 251 |:!! uVal 1699949 : GGTT : 1699953 vulgar: AfOr74/86like_1 111 251 . KQ414915.1 1699031 1699953 + 211 M 35 105 5 0 2 I 0 495 3 0 2 M 72 216 G 0 3 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699032 1699953 211 + . gene_id 6 ; sequence AfOr74/86like_1 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1699032 1699136 . + . KQ414915.1 exonerate:protein2genome:local exon 1699032 1699136 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699137 1699138 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699137 1699635 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699634 1699635 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699636 1699953 . + . KQ414915.1 exonerate:protein2genome:local exon 1699636 1699953 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699032 1699953 211 + . alignment_id 6 ; Query AfOr74/86like_1 ; Align 1699032 112 105 ; Align 1699636 147 216 ; Align 1699855 219 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr74/86like_1 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 182 Query range: 261 -> 352 Target range: 1695647 -> 1695920 262 : PheValPheSerGlyIleGlyIleLeuValHisIleLeuPhePheThrTyrIleCy : 280 !!.|||.!!!:! ! !|||! !||| !!!.:!!!!!.!.|||||||||! !|| LeuValLeuAsnLeuAlaGlyThrLeuCysGlnLeuPheMetPheThrTyrSerCy 1695648 : TTGGTACTCAACCTGGCAGGCACTTTGTGTCAACTTTTTATGTTCACGTACAGTTG : 1695702 281 : sGlyGluLeuIleGluGluSerGlyAsnValGlyLeuAlaThrTyrSerGlyTrpT : 299 |! !! |||! !..!|||||| !:!!|||.!! !|||..!!:!:!! !! !| sAspGlyLeuThrArgGluSerMetAspValSerArgAlaValPheAlaArgProT 1695703 : CGATGGTTTGACAAGAGAGAGCATGGACGTTAGCAGAGCTGTATTTGCAAGACCGT : 1695759 300 : rpThrThrLeuProMetAsnLysThrGlyLysMetLeuArgAsnAspMetLysIle : 317 ||.!!!.!|||||||||:!!!:!!.!||||||! :!!|||.!...!||| !!!: rpAlaAsnLeuProMetAspArgAsnGlyLysSerValArgGlnSerMetLeuMet 1695760 : GGGCAAATCTGCCAATGGATAGAAATGGGAAAAGTGTGCGACAAAGCATGCTAATG : 1695813 318 : IleMetMetLysCysMetArgProCysTyrLeuSerAlaGlyGlyPhePheProVa : 336 :!:!!:|||!:!! ! ||| !|||! !|||!!!|||.!!|||||||||||||| ValIleMetArgSerAsnArgCysCysCysLeuThrAlaSerGlyPhePheProVa 1695814 : GTGATCATGAGGTCGAACAGGTGTTGCTGCTTAACAGCCAGCGGGTTCTTTCCAGT : 1695870 337 : lSerLeuGluThrSerThrSerLeuIleSerSerThrValSerTyrPhe : 352 |||||||||||||! !|||.!!:!!|||!:!! ! !..!||| !||| lSerLeuGluThrTyrThrGlyValIleAsn***AspThrSerIlePhe 1695871 : TTCTCTCGAGACTTACACTGGGGTAATTAATTAAGATACGTCCATTTTT : 1695920 vulgar: AfOr74/86like_1 261 352 . KQ414915.1 1695647 1695920 + 182 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1695648 1695920 182 + . gene_id 7 ; sequence AfOr74/86like_1 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1695648 1695920 . + . KQ414915.1 exonerate:protein2genome:local exon 1695648 1695920 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1695648 1695920 182 + . alignment_id 7 ; Query AfOr74/86like_1 ; Align 1695648 262 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr74/86like_1 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 109 -> 194 Target range: 1694346 -> 1695010 110 : PheTyrValAsnTyrGlyLysAsnLysSerGluArgThrLeuProValArgMetTr : 128 |||! !.!||| !|||||||||:!!|||||||||! !|||||| !!!.!||||| PheLeuAlaAsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTr 1694347 : TTTTTAGCAAATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTG : 1694401 129 : pIleAspIleProLeuSerThrThrProTyrTyrGluLeuLeuPheAlaSerGlnL : 147 |:!!|||.!!||| !.!! !:!!||||||||||||:!!|||||| !! !|||: pValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGlnV 1694402 : GGTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGG : 1694458 148 : eu{I} >>>> Target Intron 1 >>>> {le}AlaLeuGlnGlnIleGly : 154 !!{|} 409 bp {||}..!:!! ! !!.:!!||| al{I}+- +-{le}CysValTyrHisValGly 1694459 : TA{A}gc.........................ac{TT}TGCGTGTACCATGTCGGT : 1694888 155 : LeuThrTyrLeuSerAsnAspAsnTyrLeuCysValLeuSerMetHisLeuAsnTy : 173 :!! !|||:!!!!! !|||||| !||| !!:!!|||!:!:!:|||:!! ! IleCysTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaTh 1694889 : ATATGTTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCAC : 1694945 174 : rGlnPheArgIleLeuGlnHisArgMetLeuThrIleTrpSerAsnIleLysGluG : 192 !||||||||||||||||||:!!|||.!.:!!!.!:!: ! !:! |||:!!:!!| rGlnPheArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLysG 1694946 : TCAATTTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGC : 1695002 193 : lnLysAsp : 194 ||! !||| lnThrAsp 1695003 : AAACAGAC : 1695010 vulgar: AfOr74/86like_1 109 194 . KQ414915.1 1694346 1695010 + 178 M 38 114 S 0 1 5 0 2 I 0 405 3 0 2 S 1 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694347 1695010 178 + . gene_id 8 ; sequence AfOr74/86like_1 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694347 1694461 . + . KQ414915.1 exonerate:protein2genome:local exon 1694347 1694461 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694462 1694463 . + . intron_id 1 ; splice_site "GC" KQ414915.1 exonerate:protein2genome:local intron 1694462 1694870 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694869 1694870 . + . intron_id 0 ; splice_site "AC" KQ414915.1 exonerate:protein2genome:local cds 1694871 1695010 . + . KQ414915.1 exonerate:protein2genome:local exon 1694871 1695010 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694347 1695010 178 + . alignment_id 8 ; Query AfOr74/86like_1 ; Align 1694347 110 114 ; Align 1694873 149 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr74/86like_1 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 198 -> 254 Target range: 1699812 -> 1699980 199 : ThrGluLysCysTyrLysAlaLeuLysLysCysIleLysGlnHisGlnSerLeuLe : 217 .!!|||!!.||||||||||||!!!|||!!.|||:!!::!|||||||||!:!! !:! AlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHisGlnAsnHisIl 1699813 : GCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCATAT : 1699867 218 : uLysTyrCysLysLysLeuAspTyrValTyrThrLeuThrIleLeuAsnHisValI : 236 !! !|||||| ! !:!|||:!! ! :!!!:!|||:!!! !:!!|||...|||:!!: eThrTyrCysHisArgLeuAsnGluIlePheThrValIleValLeuGlyHisIleL 1699868 : CACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTACTCGGACACATAC : 1699924 237 : leValPheSerLeuIleMetCysIleAlaPheTyrGluIleLeuIleAlaAspVal : 254 !!||||||||||||:!:!!:|||:!:!.! !:!:!!:!:|||:!!! !:!!:!! euValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeuValGluAsnIle 1699925 : TTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTCGTAGAAAACATC : 1699978 vulgar: AfOr74/86like_1 198 254 . KQ414915.1 1699812 1699980 + 164 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699813 1699980 164 + . gene_id 9 ; sequence AfOr74/86like_1 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1699813 1699980 . + . KQ414915.1 exonerate:protein2genome:local exon 1699813 1699980 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699813 1699980 164 + . alignment_id 9 ; Query AfOr74/86like_1 ; Align 1699813 199 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr74/86like_1 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 193 -> 251 Target range: 1712053 -> 1712227 194 : AspIleValSerCysThrGluLysCysTyrLysAlaLeuLysLysCysIleLysGl : 212 ||| ..!..!! !.!!!!:!!.! !||| ! !.!!!!|||!:!|||:!!:::|| AspSerThrGluPheAlaAspAsnSerTyrAspValPheLysArgCysValArgGl 1712054 : GATTCGACAGAATTTGCGGATAACTCTTACGACGTTTTCAAAAGATGCGTTCGTCA : 1712108 213 : nHisGlnSerLeuLeuLysTyrCysLysLysLeuAspTyrValTyrThrLeuThrI : 231 |||||||||||||:!! !:!|||:::||||||::: :::!:!!:!:!!! !| nHisGlnSerLeuMetAlaPheCysGluLysLeuGluGluMetPheSerMetIleI 1712109 : ACATCAATCTCTGATGGCTTTCTgcgagaaactcgaagaaatgTTCAGTATGATTA : 1712165 232 : leLeuAsnHisValIleValPheSerLeuIleMetCysIleAlaPheTyrGluIle : 249 |||||...!!.:!!:!!|||||||||:!!.!!||||||:!!! ! ! ! !:!!:!! leLeuGlyGlnLeuLeuValPheSerIlePheMetCysLeuAspValCysGlnVal 1712166 : TACTGGGGCAATTGTTAGTGTTCAGTATTTTTATGTGTCTCGACGTGTGCCAAGTA : 1712219 250 : LeuIle : 251 |||:!: LeuLeu 1712220 : CTTCTG : 1712227 vulgar: AfOr74/86like_1 193 251 . KQ414915.1 1712053 1712227 + 134 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712054 1712227 134 + . gene_id 10 ; sequence AfOr74/86like_1 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1712054 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1712054 1712227 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712054 1712227 134 + . alignment_id 10 ; Query AfOr74/86like_1 ; Align 1712054 194 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr74/86like_1 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 198 -> 264 Target range: 1695043 -> 1695241 199 : ThrGluLysCysTyrLysAlaLeuLysLysCysIleLysGlnHisGlnSerLeuLe : 217 |||! ! !!||| ! !||||||!..|||:!::!! ! ||||||:!!||| ThrValAspSerTyrLeuGlnLeuLysSerCysValGlnTyrHisGlnAlaLeuTh 1695044 : ACAGTCGATAGTTACTTACAATTGAAGAGTTGCGTGCAATACCATCAGGCACTTAC : 1695098 218 : uLysTyrCysLysLysLeuAspTyrValTyrThrLeuThrIleLeuAsnHisValI : 236 ! |||||||||||||||!!: !!:!!!:!:!!||| !:!:|||...!!.|||: rGlyTyrCysLysLysLeuGluAsnIlePheSerLeuLeuValLeuGlyGlnValL 1695099 : AGGCTATTGCAAAAAGTTGGAGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGC : 1695155 237 : leValPheSerLeuIleMetCysIleAlaPheTyrGluIleLeuIleAlaAspVal : 254 !! !!.!.:!!:!!:!!:!:|||:!!!.! |||:!!:!!!!!:!:!.!..!:!! euPheLeuAlaMetValLeuCysLeuValGlyTyrGlnLeuPheLeuValSerLeu 1695156 : TTTTCCTAGCCATGGTACTTTGCCTCGTGGGATATCAGCTATTTCTGGTAAGTTTG : 1695209 255 : ProLeuThrThrArgPheIlePheValPhe : 264 !! !||| !!! ||| ||| GluArgThrArgSerSerIle***PhePhe 1695210 : GAACGTACTCGAAGcagtatataatttttt : 1695241 vulgar: AfOr74/86like_1 198 264 . KQ414915.1 1695043 1695241 + 126 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1695044 1695241 126 + . gene_id 11 ; sequence AfOr74/86like_1 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1695044 1695241 . + . KQ414915.1 exonerate:protein2genome:local exon 1695044 1695241 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1695044 1695241 126 + . alignment_id 11 ; Query AfOr74/86like_1 ; Align 1695044 199 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr74/86like_1 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 144 -> 261 Target range: 1702010 -> 1702364 145 : SerGlnLeuIleAlaLeuGlnGlnIleGlyLeuThrTyrLeuSerAsnAspAsnTy : 163 :!!|||:!!:!::!!||| ! !!.:!!|||:!! !|||:!!!!! !|||||| AlaGlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLe 1702011 : GCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCT : 1702065 164 : rLeuCysValLeuSerMetHisLeuAsnTyrGlnPheArgIleLeuGlnHisArgM : 182 !||||||:!!:!!!:!:!!||| ! ! !||||||||||||||||||:!!|||: uLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgL 1702066 : TTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGT : 1702122 183 : etLeuThrIleTrpSerAsnIleLysGluGlnLysAspIleValSerCysThrGlu : 200 !:! !!.!:!: ! ..!!..! !!:!:!!||| !||| ! !..!! !!:!! ! euSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAla 1702123 : TATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCA : 1702176 201 : LysCysTyrLysAlaLeuLysLysCysIleLysGlnHisGlnSerLeuLeuLys<- : 219 ! !::: ! !:!!!!.||| !||| ! !:!!!:!! !:!!::! AlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGl 1702177 : GCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACA : 1702233 220 : >TyrCysLysLysLeuAspTyrValTyrThrLeuThrIleLeuAsnHisValIleV : 237 :!! !!. ! :!! ||| !:!!! !|||!.! !:!! ! ||||||| nHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleV 1702234 : ACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTG : 1702290 238 : alPheSerLeuIleMetCysIleAlaPheTyrGluIleLeuIleAlaAspValPro : 255 ||.!!.!!! !|||:!: !.!!::!.!! ! !|||:!!!.! ! ! ! alLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnVal 1702291 : TACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTG : 1702344 256 : LeuThrThrArgPheIle : 261 |||..!..!||||||:!! LeuValValArgPheVal 1702345 : CTCGTGGTACGTTTCGTT : 1702364 vulgar: AfOr74/86like_1 144 261 . KQ414915.1 1702010 1702364 + 123 M 74 222 G 0 3 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702011 1702364 123 + . gene_id 12 ; sequence AfOr74/86like_1 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702011 1702364 . + . KQ414915.1 exonerate:protein2genome:local exon 1702011 1702364 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702011 1702364 123 + . alignment_id 12 ; Query AfOr74/86like_1 ; Align 1702011 145 222 ; Align 1702236 219 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 1156 Query range: 15 -> 319 Target range: 1697497 -> 1699977 16 : AlaArgAspSerSerSerArgGlyLysAspPheAlaLeuLeuMetThrAlaPheLe : 34 ||| ! ! !.!.!!|||!.! !||||||||||||||||||||||||:!!||||| AlaValLysLysGlySerHisThrLysAspPheAlaLeuLeuMetThrSerPheLe 1697498 : GCGGTGAAAAAAGGGTCGCACACCAAAGATTTTGCTCTGTTAATGACGTCGTTTTT : 1697552 35 : uMetLysIleValGlyLeuTrpLeuAlaGluSerLysGluGluGlnArgArgArgH : 53 ||||||||||||||||||||||||||||:!!..!!..:!!|||:!!|||!:!|||! uMetLysIleValGlyLeuTrpLeuAlaLysAspSerLysGluGluArgLysArgA 1697553 : AATGAAGATCGTCGGTCTTTGGTTAGCGAAAGACAGCAAGGAGGAACGCAAGCGTC : 1697609 54 : isLeuThrLeuMetTyrThrValValAlaIleLeuPheGlyValTrpValGlnPhe : 71 ..! !||||||!!:|||||||||||||||||||||||||||||||||||||||||| rgTyrThrLeuIleTyrThrValValAlaIleLeuPheGlyValTrpValGlnPhe 1697610 : GGTACACTTTGATCTATACGGTGGTCGCGATTTTGTTTGGAGTGTGGGTGCAGTTC : 1697663 72 : ArgAspPheTyrTyrSerTrpProAsnPheGly >>>> Target Intron 1 : 83 ||||||||||||||||||||||||||||||||| 849 bp ArgAspPheTyrTyrSerTrpProAsnPheGly++ 1697664 : AGAGACTTCTATTACTCCTGGCCGAATTTTGGCgt..................... : 1697701 84 : >>>> AsnCysAlaTyrThrAlaCysAsnIleLeuCysLeuIleMetValLeuLe : 99 :!!||||||||||||||||||||||||||||||||||||||||||||||| ++AspCysAlaTyrThrAlaCysAsnIleLeuCysLeuIleMetValLeuLe 1697702 : ....aggACTGTGCTTACACCGCTTGTAACATTCTCTGCCTGATTATGGTACTGTT : 1698596 100 : uLysLeuPheValLeuPheValHisArgLysGluPheIleAspLeuLeuValTyrT : 118 |||||||||||||:!!|||:!!||||||||||||||||||!!:|||||||||||| uLysLeuPheValValPheIleHisArgLysGluPheIleGluLeuLeuValTyrM 1698597 : AAAGCTGTTCGTTGTATTCATACACAGGAAAGAATTCATCGAACTgcttgtatata : 1698653 119 : hrHisGluHisPheTrpHisThrAsnTyrThrTyrAsnGluLeuLeuLeuValGlu : 136 :::::::::||||||||| !|||||| !! !|||||||||||||||:!!:!! etTyrLysAsnPheTrpHisLeuAsnTyrAspCysAsnGluLeuLeuLeuLeuGln 1698654 : tgtacaaaaatttttggcACCTCAATTACGATTGCAACGAACTACTACTGCTGCAA : 1698707 137 : LysCysLysArgIleCysMetLeuCysIleThrLeuIleAsnValCysAlaGlnGl : 155 ! |||!:!|||||| !!! :!!|||||||||||||||||| !!||||||||||| AspCysArgArgIleSerThrIleCysIleThrLeuIleAsnPheCysAlaGlnGl 1698708 : GACTGCAGAAGAATTAGCACTATATGTATCACGTTGATTAACTTCTGTGCTCAAGG : 1698764 156 : yThrIleValSerTyrValLeuThrProIleVal{G} >>>> Target Intro : 167 |||||||||||||||||||||||||||||||:!!{!} 232 bp yThrIleValSerTyrValLeuThrProIleIle{A}++ 1698765 : CACAATTGTCAGCTACGTGCTAACACCTATTATA{G}gt................. : 1698803 168 : n 2 >>>> {lu}AsnIleGlyArgAsnHisSerAspArgValLeuProPheAsn : 181 { !}||||||||||||||| !|||||||||||||||||||||||| ++{la}AsnIleGlyArgAsnSerSerAspArgValLeuProPheAsn 1698804 : ........ag{ca}aatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAAC : 1699074 182 : MetTrpValAspLeuProLysLeuSerValSerProTyrTyrGluIleLeuPheVa : 200 |||||||||||||||||| ||||||||||||||| |||||||||:!!||||| MetTrpValAspLeuPro---LeuSerValSerProThrTyrGluIleValPheVa 1699075 : ATGTGGGTTGATTTGCCG---CTGTCTGTGTCACCAACGTACGAAATAGTGTTCGT : 1699128 201 : lLeuGln >>>> Target Intron 3 >>>> ValLeuSerLeuTyrHisVa : 209 ||||||| 499 bp |||||||||||||||||||| lLeuGln++ ++ValLeuSerLeuTyrHisVa 1699129 : GCTTCAGgt.........................agGTTCTGTCTTTGTACCACGT : 1699654 210 : lGlyValCysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaA : 228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| lGlyValCysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaA 1699655 : TGGTGTATGTTACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGG : 1699711 229 : laThrGlnPheArgIleLeuGlnHisArgLeuSerSerLeuGlySerSerGlyTrp : 246 |||||||||||||||||||||||:!!|||||||||!:!||||||..!!!! laThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThr------ 1699712 : CTACTCAATTTCGTATACTGCAATACAGGTTATCGAACTTGGGTGATACG------ : 1699762 247 : AspThrGlyGlyArgAlaPheAspAsnArgAspThrSerArgTrpSerSerCysIl : 265 !.! !! !!:!!.! !||||||..!..!!:!:!! ! !||| !!! ! ---AsnArgLysGlnValAspAspAsnGluSerSerAlaAlaLeuSerArgPheAl 1699763 : ---AACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCTCTGTCTCGTTTCGC : 1699813 266 : eGluAsnCysTyrAlaThrPheLysLeuCysValLysGlnHisGlnAspArgIleT : 284 |||||||||||| !.!!|||||| !||||||::!|||||||||:!!!.!|||| aGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHisGlnAsnHisIleT 1699814 : GGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCATATCA : 1699870 285 : hrTyrCysGlnArgLeuAsnAspIlePheThrIleIleValLeuGlyHisIleLeu : 302 ||||||||!!.|||||||||!!:|||||||||:!!||||||||||||||||||||| hrTyrCysHisArgLeuAsnGluIlePheThrValIleValLeuGlyHisIleLeu 1699871 : CGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTACTCGGACACATACTT : 1699924 303 : ValPheSerLeuLeuMetCysLeuValGlyPheGlnValLeuMetAlaAsn : 319 |||||||||||||||!!:||||||||||||||||||||||||:!:! !||| ValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeuValGluAsn 1699925 : GTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTCGTAGAAAAC : 1699977 vulgar: AfOr87 15 319 . KQ414915.1 1697497 1699977 + 1156 M 67 201 5 0 2 I 0 845 3 0 2 M 84 252 S 0 1 5 0 2 I 0 228 3 0 2 S 1 2 M 20 60 G 1 0 M 14 42 5 0 2 I 0 495 3 0 2 M 42 126 G 3 0 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1697498 1699977 1156 + . gene_id 1 ; sequence AfOr87 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1697498 1697698 . + . KQ414915.1 exonerate:protein2genome:local exon 1697498 1697698 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1697699 1697700 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1697699 1698547 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1698546 1698547 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1698548 1698800 . + . KQ414915.1 exonerate:protein2genome:local exon 1698548 1698800 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1698801 1698802 . + . intron_id 2 ; splice_site "Gt" KQ414915.1 exonerate:protein2genome:local intron 1698801 1699032 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1699031 1699032 . + . intron_id 1 ; splice_site "Ag" KQ414915.1 exonerate:protein2genome:local cds 1699033 1699136 . + . KQ414915.1 exonerate:protein2genome:local exon 1699033 1699136 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1699137 1699138 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699137 1699635 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1699634 1699635 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699636 1699977 . + . KQ414915.1 exonerate:protein2genome:local exon 1699636 1699977 . + . insertions 0 ; deletions 3 KQ414915.1 exonerate:protein2genome:local similarity 1697498 1699977 1156 + . alignment_id 1 ; Query AfOr87 ; Align 1697498 16 201 ; Align 1698548 83 252 ; Align 1699035 168 60 ; Align 1699095 189 42 ; Align 1699636 203 126 ; Align 1699762 248 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 823 Query range: 85 -> 423 Target range: 1710872 -> 1713321 86 : TyrThrAlaCysAsnIleLeuCysLeuIleMetValLeuLeuLysLeuPheValLe : 104 !:! ! !|||!.!:!!|||! :!!|||||| ! !:!!|||:!!.!!:!!|| PheAspIleCysThrLeuLeuSerValIleMetProAlaIleLysIleIleIleLe 1710873 : TTCGACATATGCACTCTTCTGTCGGTGATAATGCCCGCTATCAAAATAATCATCCT : 1710927 105 : uPheValHisArgLysGluPheIleAspLeuLeuValTyrThrHisGluHisPheT : 123 ||||:!!:!!!:!:!!||||||.!! !|||:!!|||||||||.!...!!!.||| uPheIleAsnLysGluGluPhePheArgLeuIleValTyrThrGluArgGlnPheM 1710928 : GTTTATCAACAAGGAGGAGTTTTTCCGTTTGATCGTGTACACAGAGCGACAATTCA : 1710984 124 : rpHisThrAsnTyrThrTyrAsnGluLeuLeuLeuValGluLysCysLysArgIle : 141 !:!! !:!!|||!.! ! :!!||| ! !:!!||| ! |||||||||:!: etAsnGlyAspTyrAsnGluAspGluArgLysIleValPheAspCysLysArgLeu 1710985 : TGAACGGGGATTACAACGAGGACGAGAGGAAGATTGTGTTCGATTGTAAACGCCTG : 1711038 142 : CysMetLeuCysIleThrLeuIleAsnValCysAlaGlnGlyThrIleValSerTy : 160 |||! !!!! !! ! !!!!:!!::: ! .!! !..! !:!!:!!||||| CysThrPhePheThrCysPheLeuSerSerValThrLeuSerCysValLeuSerTy 1711039 : TGTACATTCTTCACTTGTTTCCTCTCATCTGTGACTTTATCGTGCGTTCTCTCTTA : 1711095 161 : rValLeuThrProIleVal{G} >>>> Target Intron 1 >>>> {lu}A : 168 ||||:!!||||||||| !{ } 119 bp { !}| rValValThrProIleTyr{M}++ ++{et}A 1711096 : CGTCGTCACTCCAATTTAC{A}gt.........................ag{TG}A : 1711238 169 : snIleGlyArgAsnHisSerAspArgValLeuProPheAsnMetTrpValAspLeu : 186 ||||||||||||||.!.|||||||||:!!|||||||||!!.||||||:!!|||:!! snIleGlyArgAsnGluSerAspArgIleLeuProPheLysMetTrpIleAspIle 1711239 : ATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTGGATTGATATA : 1711292 187 : ProLysLeuSerValSerProTyrTyrGluIleLeuPheValLeuGln >>>> T : 203 ||| !|||:!!!!!||||||:::||||||...|||...|||||| Pro---ThrSerMetThrProTyrPheGluIlePhePheThrLeuGln++ 1711293 : CCG---ACATCGATGACACcgtattttgaaatattcttcaccTTACAGgt...... : 1711342 204 : arget Intron 2 >>>> ValLeuSerLeuTyrHisValGlyValCysTyrIl : 214 546 bp ||||||||| !|||!!.:!!|||||| !!||| ++ValLeuSerAlaTyrGlnIleGlyValSerTyrGl 1711343 : ...................agGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGG : 1711919 215 : eCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgI : 233 !||||||||||||:!!||||||:!!|||||||||||| !|||||||||||||||| yCysPheAspAsnValLeuCysIleMetAsnLeuHisLeuAlaThrGlnPheArgI 1711920 : TTGCTTCGACAACGTTCTATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAA : 1711976 234 : leLeuGlnHisArgLeuSerSerLeuGlySerSerGlyTrpAspThrGlyGlyArg : 251 ||||||||||||||||| !!:!:!!..!.!! ! ! ! ! ! ! !..! leLeuGlnHisArgLeuValAsnIleAsnGlyLeuLysSerLysGlnThrProGlu 1711977 : TACTGCAACATAGACTGGTGAATATAAACGGTCTGAAGAGCAAACAGACACCGGAG : 1712030 252 : AlaPheAspAsnArgAspThrSerArgTrpSerSerCysIleGluAsnCysTyrAl : 270 ! !!!:!.. ! !! !..! ! !!!..!! ! !!:|||! !|||! LysGlyGluThrSerIleIleAspSer---ThrGluPheAlaAspAsnSerTyrAs 1712031 : AAAGGTGAAACGTCGATTATAGATTCG---ACAGAATTTGCGGATAACTCTTACGA : 1712084 271 : aThrPheLysLeuCysValLysGlnHisGlnAspArgIleThrTyrCysGlnArgL : 289 !..!|||||| !||||||:::|||||||||..!! !!!:.!!!:!|||::::::| pValPheLysArgCysValArgGlnHisGlnSerLeuMetAlaPheCysGluLysL 1712085 : CGTTTTCAAAAGATGCGTTCGTCAACATCAATCTCTGATGGCTTTCTgcgagaaac : 1712141 290 : euAsnAspIlePheThrIleIleValLeuGlyHisIleLeuValPheSerLeuLeu : 307 ||...::::::|||!:!!!:|||:!!||||||!!.:!:||||||||||||:!!!!! euGluGluMetPheSerMetIleIleLeuGlyGlnLeuLeuValPheSerIlePhe 1712142 : tcgaagaaatgTTCAGTATGATTATACTGGGGCAATTGTTAGTGTTCAGTATTTTT : 1712195 308 : MetCysLeuValGlyPheGlnValLeuMet >>>> Target Intron 3 >>> : 318 |||||||||! !! !! !|||||||||:!! 142 bp MetCysLeuAspValCysGlnValLeuLeu++ 1712196 : ATGTGTCTCGACGTGTGCCAAGTACTTCTGgt........................ : 1712230 319 : > AlaAsnSerProProThrArgArgLeuIlePheValPheHisIleThrGlySe : 335 !!..!:!! !! ! !!:!!:!:::||||||...||||||::!.!!|||!! ++ProGlyAlaSerValGlyLysGlnMetIlePheThrPheHisLeuAlaGlyCy 1712231 : .agCCAGGTGCATCTGTGGGTAAACAGAtgattttcacgtttcacctAGCGGGATG : 1712421 336 : rLeuCysGlnLeuLeuLeuPheThrTyrSerCysAspSerLeuIleGlnGluSerT : 354 !:!!||||||||||||:!!||||||||||||||||||!!!:!!||| !|||||| sMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleThrGluSerL 1712422 : TATGTGTCAATTGCTGATGTTTACGTACAGCTGCGATTGTATAATAACGGAAAGTT : 1712478 355 : hrAsnValGlySerAlaValTyrSerGlyProTrpIleCysLeuProMetAsnArg : 372 !|||||| !..!|||||||||..!||||||||| ! !!|||||||||!:!! ! euAsnValThrGluAlaValTyrAspGlyProTrpProArgLeuProMetSerThr 1712479 : TGAACGTGACGGAAGCGGTGTACGATGGACCATGGCCACGTTTGCCAATGAGCACG : 1712532 373 : ThrGlyArgThrLeuArgArgAspLeuLysMetValIleIleArgSerArgLysPr : 391 ! !||||||! !:!!|||!:!||||||! !:!:|||||||||||||||||| !|| ArgGlyArgMetIleArgLysAspLeuIleLeuValIleIleArgSerArgValPr 1712533 : AGAGGAAGAATGATAAGGAAGGATTTGATACTCGTTATCATAAGATCGAGAGTACC : 1712589 392 : oCysCysLeuThrAlaSerArgPhePheProValSerLeuGluThrCysThrThr : 410 ||||||||||||||||!!! !!|||||| !:!!||||||||||||! !|||! ! oCysCysLeuThrAlaArgGlyPhePheValIleSerLeuGluThrTyrThrLys+ 1712590 : TTGTTGCTTGACCGCCAGAGGATTCTTCGTAATATCTTTGGAAACGTATACGAAGg : 1712646 411 : >>>> Target Intron 4 >>>> ValLeuSerThrAlaMetSerTyrPheT : 419 634 bp |||:!!|||||||||:!!|||||||||| + ++ValIleSerThrAlaValSerTyrPheT 1712647 : t.........................agGTTATAAGTACAGCAGTGTCGTACTTCA : 1713307 420 : hrLeuMetArgGln : 423 |||||:!:|||||| hrLeuLeuArgGln 1713308 : CACTGTTAAGGCAA : 1713321 vulgar: AfOr87 85 423 . KQ414915.1 1710872 1713321 + 823 M 81 243 S 0 1 5 0 2 I 0 115 3 0 2 S 1 2 M 20 60 G 1 0 M 14 42 5 0 2 I 0 542 3 0 2 M 58 174 G 1 0 M 56 168 5 0 2 I 0 138 3 0 2 M 92 276 5 0 2 I 0 630 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1710873 1713321 823 + . gene_id 2 ; sequence AfOr87 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1710873 1711116 . + . KQ414915.1 exonerate:protein2genome:local exon 1710873 1711116 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711117 1711118 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711117 1711235 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711234 1711235 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711236 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711236 1711339 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712227 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1712228 1712229 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712228 1712369 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1712368 1712369 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1712370 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712370 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713321 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713321 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1710873 1713321 823 + . alignment_id 2 ; Query AfOr87 ; Align 1710873 86 243 ; Align 1711238 168 60 ; Align 1711298 189 42 ; Align 1711886 203 174 ; Align 1712060 262 168 ; Align 1712370 318 276 ; Align 1713280 410 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 786 Query range: 201 -> 425 Target range: 1702013 -> 1703656 202 : GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe : 220 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 221 : uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnHisArgLeuS : 239 ||||||||||||||||||||||||||||||||||||||||||||||:!!||||||| uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 240 : erSerLeuGlySerSerGlyTrpAspThrGlyGlyArgAlaPheAspAsnArgAsp : 257 ||!:!||||||..!!!! !.! !! !!:!!.! !||||||..!..! erAsnLeuGlyAspThr---------AsnArgLysGlnValAspAspAsnGluSer 1702126 : CGAACTTGGGTGATACG---------AACAGGAAGCAAGTAGATGACAATGAATCC : 1702170 258 : ThrSerArgTrpSerSerCysIleGluAsnCysTyrAlaThrPheLysLeuCysVa : 276 !:!:!! ! !||| !!! ! |||||||||||| !.!!|||||| !||||| SerAlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysVa 1702171 : AGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGT : 1702227 277 : lLysGlnHisGlnAspArgIleThrTyrCysGlnArgLeuAsnAspIlePheThrI : 295 |::!|||||||||:!!!.!||||||||||||!!.|||||||||!!:|||||||||: lArgGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrV 1702228 : ACGACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGG : 1702284 296 : leIleValLeuGlyHisIleLeuValPheSerLeuLeuMetCysLeuValGlyPhe : 313 !!||||||||||||||||||||||||||||||||||||!!:||||||||||||||| alIleValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPhe 1702285 : TCATTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTC : 1702338 314 : GlnValLeuMetAlaAsnSerProPro{T} >>>> Target Intron 1 >>> : 323 |||||||||:!!!.!..!! ! ! !{ } 607 bp GlnValLeuValValArgPheValGlu{P}-+ 1702339 : CAAGTGCTCGTGGTACGTTTCGTTGAA{C}ct........................ : 1702371 324 : > {hr}ArgArgLeuIlePheValPheHisIleThrGlySerLeuCysGlnLeuL : 340 {!!}|||||||||! !|||||||||||||||..!||||||||||||||||||| ++{ro}ArgArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuL 1702372 : .ag{CG}AGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTAT : 1703026 341 : euLeuPheThrTyrSerCysAspSerLeuIleGlnGluSerThrAsnValGlySer : 358 |||||||||||||||||||||||.!!||||||:!!||||||||||||:!!|||!!! euLeuPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThr 1703027 : TGCTATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACT : 1703080 359 : AlaValTyrSerGlyProTrpIleCysLeuProMetAsnArgThrGlyArgThrLe : 377 |||:!!||| !|||||||||||| !|||||||||:!!!:!.!!||||||! !|| AlaIleTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLe 1703081 : GCGATATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTT : 1703137 378 : uArgArgAspLeuLysMetValIleIleArgSerArgLysProCysCysLeuThrA : 396 |||||||||||||! !|||||||||:!!|||||||||||| !! !!|||||||||| uArgArgAspLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrA 1703138 : GAGAAGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTG : 1703194 397 : laSerArgPhePheProValSerLeuGluThrCysThrThr >>>> Target I : 410 ||||| !!||||||||||||||||||||||||||||||||| 373 laSerGlyPhePheProValSerLeuGluThrCysThrThr++ 1703195 : CCAGCGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGgt............. : 1703238 411 : ntron 2 >>>> ValLeuSerThrAlaMetSerTyrPheThrLeuMetArgGln : 423 bp |||||||||||||||||||||||||||||||||:!:|||!!. ++ValLeuSerThrAlaMetSerTyrPheThrLeuLeuArgHis 1703239 : ............agGTGCTCAGTACAGCGATGTCATACTTCACTTTATTAAGGCAC : 1703648 424 : SerPhe : 425 |||||| SerPhe 1703649 : TCTTTT : 1703656 vulgar: AfOr87 201 425 . KQ414915.1 1702013 1703656 + 786 M 43 129 G 3 0 M 75 225 S 0 1 5 0 2 I 0 603 3 0 2 S 1 2 M 86 258 5 0 2 I 0 369 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1703656 786 + . gene_id 3 ; sequence AfOr87 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702014 1702368 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702368 . + . insertions 0 ; deletions 3 KQ414915.1 exonerate:protein2genome:local splice5 1702369 1702370 . + . intron_id 1 ; splice_site "CT" KQ414915.1 exonerate:protein2genome:local intron 1702369 1702975 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702974 1702975 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1702976 1703235 . + . KQ414915.1 exonerate:protein2genome:local exon 1702976 1703235 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1703236 1703237 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1703236 1703608 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1703607 1703608 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1703609 1703656 . + . KQ414915.1 exonerate:protein2genome:local exon 1703609 1703656 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1703656 786 + . alignment_id 3 ; Query AfOr87 ; Align 1702014 202 129 ; Align 1702143 248 225 ; Align 1702978 324 258 ; Align 1703609 410 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 636 Query range: 21 -> 243 Target range: 1692085 -> 1694989 22 : ArgGlyLysAspPheAlaLeuLeuMetThrAlaPheLeuMetLysIleValGlyLe : 40 !:!.!!||||||.!!:!!:!!:!! !:!! !||||||||||||||||||||||| GlnSerLysAspIleSerIleValTrpSerPhePheLeuMetLysIleValGlyLe 1692086 : CAGAGTAAAGATATCTCGATCGTTTGGTCGTTCTTTTTGATGAAAATCGTAGGTCT : 1692140 41 : uTrpLeuAlaGluSerLysGluGluGlnArgArgArgHisLeuThrLeuMetTyrT : 59 ||||||||||! ..!:!!! |||||||||||||||:!!!!!.!!|||!!:|||| uTrpLeuAlaAlaAspGluAlaGluGlnArgArgArgAsnPheAlaLeuIleTyrT 1692141 : GTGGCTAGCCGCCGACGAGGCTGAACAACGTCGGAGAAATTTCGCGCTGATTTACA : 1692197 60 : hrValValAlaIleLeuPheGlyValTrpValGlnPheArgAspPheTyrTyrSer : 77 ||:!! !||||||!!!.!!!.! !!! :!! !.!.||||||.!.||||||||| hrLeuAsnAlaIlePheIleAlaSerCysIleAlaMetArgAspIleTyrTyrSer 1692198 : CGCTGAACGCGATTTTTATCGCTTCGTGTATAGCAATGAGAGATATATACTATTCC : 1692251 78 : TrpProAsnPheGly >>>> Target Intron 1 >>>> AsnCysAlaTyr : 86 ||| !||| ! ..! 1732 bp :!!||| !||| TrpGlyAsnValAsn++ ++AspCysIleTyr 1692252 : TGGGGAAACGTGAACgt.........................agGACTGCATTTAC : 1694010 87 : ThrAlaCysAsnIleLeuCysLeuIleMetValLeuLeuLysLeuPheValLeuPh : 105 ..!!.!||||||||||||! !||| !!:|||!!!!!!|||:!!.!!||||||!: ValGlyCysAsnIleLeuTyrLeuAlaIleValPhePheLysIleLeuValLeuTy 1694011 : GTCGGGTGCAACATTTTATACCTAGCGATCGTTTTCTTCAAGATCCTCGTTTTGTA : 1694067 106 : eValHisArgLysGluPheIleAspLeuLeuValTyrThrHisGluHisPheTrpH : 124 ! !||||||! !|||||| !! |||:!! !!:!|||!!.||| ! ||||||| rLysHisArgIleGluPheTyrGlyLeuIleArgPheThrGlnGluLysPheTrpH 1694068 : CAAGCACAGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAGAGAAATTCTGGC : 1694124 125 : isThrAsnTyrThrTyrAsnGluLeuLeuLeuValGluLysCysLysArgIleCys : 142 || !:!!|||!.!! ...||| !|||:!!:!!...:!!||||||!:!|||||| isPheAspTyrAsnSerArgGluLysLeuIleLeuSerGluCysLysLysIleCys 1694125 : ATTTCGACTATAATTCACGGGAGAAGTTAATTTTATCCGAGTGCAAGAAGATATGT : 1694178 143 : MetLeuCysIleThrLeuIleAsnValCysAlaGlnGlyThrIleValSerTyrVa : 161 ! :!!! !|||..! !.!!!:! !!|||.!!||||||||| !!.!.!!||||| ThrValPheIleValAlaPheSerPheCysThrGlnGlyThrCysAlaGlyTyrVa 1694179 : ACCGTTTTCATCGTTGCCTTCAGCTTCTGTACTCAGGGCACGTGTGCTGGTTACGT : 1694235 162 : lLeuThrProIleVal{G} >>>> Target Intron 2 >>>> {lu}AsnI : 169 |:!!|||||||||:!!{!} 100 bp { !}|||: lValThrProIleLeu{A}++ ++{la}AsnV 1694236 : AGTGACACCTATTTTA{g}gt.........................ag{CA}AATG : 1694359 170 : leGlyArgAsnHisSerAspArgValLeuProPheAsnMetTrpValAspLeuPro : 187 !!|||!:!|||!!.|||!!:|||:!!||||||||||||||||||||||||!!!||| alGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTrpValAspPhePro 1694360 : TTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTGGGTTGACTTTCCT : 1694413 188 : LysLeuSerValSerProTyrTyrGluIleLeuPheValLeuGln >>>> Targ : 203 !.!!:!!|||||||||||||||:!!||||||:!!:!!||| ---ThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGln++ 1694414 : ---ACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGgt......... : 1694460 204 : et Intron 3 >>>> ValLeuSerLeuTyrHisValGlyValCysTyrIleCy : 215 409 bp ..!|||!!!:!!||||||||||||:!!||||||!!:|| ++ThrLeuCysValTyrHisValGlyIleCysTyrMetCy 1694461 : ................agACACTTTGCGTGTACCATGTCGGTATATGTTACATGTG : 1694903 216 : sPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleL : 234 ||||||||||:!!||| !!|||:!!|||||||||!.!||||||||||||||||||| sPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGlnPheArgIleL 1694904 : CTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAATTTCGTATCC : 1694960 235 : euGlnHisArgLeuSerSerLeuGlySer : 243 |||||:!!|||!!!! !!:!|||.!!!:! euGlnTyrArgPheMetAsnLeuSerAsn 1694961 : TTCAATACCGATTCATGAATTTGAGTAAT : 1694989 vulgar: AfOr87 21 243 . KQ414915.1 1692085 1694989 + 636 M 61 183 5 0 2 I 0 1728 3 0 2 M 84 252 S 0 1 5 0 2 I 0 96 3 0 2 S 1 2 M 20 60 G 1 0 M 14 42 5 0 2 I 0 405 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1692086 1694989 636 + . gene_id 4 ; sequence AfOr87 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1692086 1692268 . + . KQ414915.1 exonerate:protein2genome:local exon 1692086 1692268 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1692269 1692270 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1692269 1694000 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1693999 1694000 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694001 1694253 . + . KQ414915.1 exonerate:protein2genome:local exon 1694001 1694253 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694254 1694255 . + . intron_id 2 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1694254 1694353 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1694352 1694353 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694354 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694354 1694457 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1694989 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1694989 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1692086 1694989 636 + . alignment_id 4 ; Query AfOr87 ; Align 1692086 22 183 ; Align 1694001 83 252 ; Align 1694356 168 60 ; Align 1694416 189 42 ; Align 1694867 203 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 501 Query range: 166 -> 421 Target range: 1706998 -> 1708472 167 : GluAsnIleGlyArgAsnHisSerAspArgValLeuProPheAsnMetTrpValAs : 185 |||!::||||||:::|||...|||||||||:!!||| ! !!|||.!.|||:!!|| GluSerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAs 1706999 : GAAAgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGA : 1707053 186 : pLeuProLysLeuSerValSerProTyrTyrGluIleLeuPhe{Va} >>>> Ta : 200 |!!!||| !!!!:!!!!!|||||||||||||||||||||{..} pPhePro---ThrThrMetThrProTyrTyrGluIleLeuPhe{Th}++ 1707054 : CTTTCCG---ACAACCATGACACCATACTATGAGATATTATTT{AC}gt....... : 1707099 201 : rget Intron 1 >>>> {l}LeuGlnValLeuSerLeuTyrHisValGlyVal : 211 261 bp {!}||| :!!||||||||| ! ! !! !||| ++{r}LeuCysLeuLeuSerLeuGlnValPheIleVal 1707100 : ..................ag{T}TTATGTCTGTTATCGCTACAGGTTTTTATCGTA : 1707389 212 : CysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGl : 230 |||:!!|||.!. !:!! !||||||:!! |||!!!! ..! !! !.! MetTyrValCysIle---SerTyrLeuCysIleAspAsnPheLeuCysMetIleAs 1707390 : ATGTACGTTTGCATA---AGCTACCTTTGTATCGACAATTTTCTGTGCATGATCAA : 1707443 231 : nPheArgIleLeuGlnHisArgLeuSerSerLeuGlySerSerGlyTrpAspThrG : 249 ..!.!.!! ! ! !!. !! !! !! !! ! !!!! !..! ! !| nLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnValCysG 1707444 : TCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAATGTGTGCG : 1707500 250 : lyGlyArgAlaPheAspAsnArgAspThrSerArgTrpSerSerCysIleGluAsn : 267 ||!.!!.!! ! !...:::::: :::...::: !!||| ! !!:.!. lyAlaAsnGluArgSerAspLysIleSerLysLysThrProSerAsnSerAspGlu 1707501 : GTGCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTCGGACGAA : 1707554 268 : CysTyrAlaThrPheLysLeuCysValLysGlnHisGlnAspArgIleThrTyrCy : 286 |||||||||! !|||||| !|||:!!:!!|||||||||! ! !||| !||||| CysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCy 1707555 : TGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTG : 1707611 287 : sGlnArgLeuAsnAspIlePheThrIleIleValLeuGlyHisIleLeuValPheS : 305 |.!...!|||.!.!!::!:||| !:!!.!!||||||!.!!!.:!:|||:!!|||| sAsnGluLeuGlnGluValPheGlyLeuPheValLeuAlaGlnValLeuLeuPheS 1707612 : TAACGAACTTCAAGAGGTGTTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCA : 1707668 306 : erLeuLeuMetCysLeuValGlyPheGlnValLeuMet >>>> Target Intr : 318 |||||||||||||||||! !|||!:! :!!:!!||| 457 bp erLeuLeuMetCysLeuAspGlyTyr---LeuValMet++ 1707669 : GTTTGTTAATGTGCCTCGATGGATAT---TTGGTGATGgt................ : 1707706 319 : on 2 >>>> AlaAsnSerProProThrArgArgLeuIlePheValPheHisIle : 332 ! !:!!!!!||| !! !!:!||||||! !|||:!!||||||:!! ++GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeu 1707707 : .........agGAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTA : 1708203 333 : ThrGlySerLeuCysGlnLeuLeuLeuPheThrTyrSerCysAspSerLeuIleGl : 351 ||||||!!!|||||||||||||||:!!||||||||||||||||||!!!||||||!: ThrGlyCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleAr 1708204 : ACGGGATGCCTGTGCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACG : 1708260 352 : nGluSerThrAsnValGlySerAlaValTyrSerGlyProTrpIleCysLeuProM : 370 !|||||| !||||||!.!!:!|||:!!|||..! !! !!|||||| !||||||| gGluSerLeuAsnValAlaAsnAlaIleTyrAspCysSerTrpIleHisLeuProM 1708261 : AGAAAGCTTGAACGTGGCCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAA : 1708317 371 : etAsnArgThrGlyArgThrLeuArgArgAspLeuLysMetValIleIleArgSer : 388 ||:!!|||:!!||||||! !||||||!:!||||||! !.!.|||||| !|||||| etAspArgSerGlyArgMetLeuArgLysAspLeuThrPheValIleGlyArgSer 1708318 : TGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCT : 1708371 389 : ArgLysProCysCysLeuThrAlaSerArgPhePheProValSerLeuGluThrCy : 407 ||| !||||||||||||||||||!!! !!||||||||||||||||||||||||! ArgValProCysCysLeuThrAlaCysGlyPhePheProValSerLeuGluThrTy 1708372 : AGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTA : 1708428 408 : sThrThrValLeuSerThrAlaMetSerTyrPheThrLeuMet : 421 !|||:!!|||:!! !:!!.!!.!. ! .!.:!!:!!:!: rThrSerValIleHisSerThrPheHisThrIleSerMetLeu 1708429 : CACTTCGGTAATTCATTCAACATTTCACACGATATCGATGTTA : 1708472 vulgar: AfOr87 166 421 . KQ414915.1 1706998 1708472 + 501 M 21 63 G 1 0 M 11 33 S 0 2 5 0 2 I 0 257 3 0 2 S 1 1 M 16 48 G 1 0 M 96 288 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 104 312 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1706999 1708472 501 + . gene_id 5 ; sequence AfOr87 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1706999 1707096 . + . KQ414915.1 exonerate:protein2genome:local exon 1706999 1707096 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1707097 1707098 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707097 1707357 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707356 1707357 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707358 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707358 1707703 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708472 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708472 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1706999 1708472 501 + . alignment_id 5 ; Query AfOr87 ; Align 1706999 167 63 ; Align 1707062 189 33 ; Align 1707359 201 48 ; Align 1707407 218 288 ; Align 1707695 315 9 ; Align 1708161 318 312 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 429 Query range: 265 -> 426 Target range: 1688496 -> 1690088 266 : GluAsnCysTyrAlaThrPheLysLeuCysValLysGlnHisGlnAspArgIleTh : 284 .!.!!.||||||.!!! !.!.! ! !|||:!!|||.!.||||||... !||| AsnLysCysTyrThrLysLeuIleAspCysIleLysAsnHisGlnSerLeuIleGl 1688497 : AACAAATGTTACACCAAGCTGATAGATTGCATCAAAAATCATCAGTCGTTGATCGA : 1688551 285 : rTyrCysGlnArgLeuAsnAspIlePheThrIleIleValLeuGlyHisIleLeuV : 303 !!:!||| !!:!|||.!.:!!:!:!:!|||:!:! !:!!||||||||||||:!!| uPheCysValLysLeuGluAsnValTyrThrLeuThrIleLeuGlyHisIleValV 1688552 : GTTCTGCGTGAAACTCGAGAACGTGTACACGTTGACTATACTCGGCCACATAGTGG : 1688608 304 : alPheSerLeuLeuMetCysLeuValGlyPheGlnValLeuMet >>>> Targe : 318 ||||||||||||||||||||!!!! ! !!:!:!!|||:!!:!! alPheSerLeuLeuMetCysPheAspThrTyrGluValValLeu++ 1688609 : TCTTCAGCTTGTTGATGTGCTTCGACACGTACGAGGTAGTTCTGgt.......... : 1688655 319 : t Intron 1 >>>> AlaAsnSerProProThrArgArgLeuIlePheValPhe : 330 816 bp |||!!. !||| !!|||! !||||||||||||:!!||| ++AlaLysValProThrThrThrArgLeuIlePheLeuPhe 1688656 : ...............agGCAAAGGTACCTACCACGACGCGCCTCATATTCTTATTC : 1689505 331 : HisIleThrGlySerLeuCysGlnLeuLeuLeuPheThrTyrSerCysAspSerLe : 349 |||!!:! !||||||!!! !!..::::::...|||||||||||||||! !.!!|| HisMetIleGlySerPheIleHisIleIlePhePheThrTyrSerCysGlyGlyLe 1689506 : CACATGATCGGTAGCTTCATCCacataattttcttcacgtACAGTTGTGGTGGTTT : 1689562 350 : uIleGlnGluSerThrAsnValGlySerAlaValTyrSerGlyProTrpIleCysL : 368 ||||:!!||||||! !:!!:!!!.!!!!|||..!|||:!!||| !|||! !| uIleGluGluSerMetAspIleAlaThrAlaThrTyrAlaGlyMetTrpThrValL 1689563 : GATAGAAGAGAGTATGGATATTGCAACAGCAACGTATGCAGGAATGTGGACGGTTT : 1689619 369 : euProMetAsnArgThrGlyArgThrLeuArgArgAspLeuLysMetValIleIle : 386 |||||||||||!:!..!|||!:!! !:!!||| !!:!!:!!|||:!::!!! !:!! euProMetAsnLysValGlyLysMetIleArgGlyAsnMetLysLeuMetThrVal 1689620 : TGCCAATGAATAAAGTTGGCAAAATGATACGAGGAAATATGAAGTTAATGACCGTA : 1689673 387 : ArgSerArgLysProCysCysLeuThrAlaSerArgPhePheProValSerLeuGl : 405 |||||| !:!!|||||||||:!!||||||.!! !!||||||||||||||||||:! ArgSerLeuGlnProCysCysIleThrAlaGlyGlyPhePheProValSerLeuLy 1689674 : AGGTCGTTGCAACCGTGTTGCATAACTGCTGGTGGATTCTTTCCTGTCTCCTTGAA : 1689730 406 : uThrCysThrThr >>>> Target Intron 2 >>>> ValLeuSerThrAl : 414 !|||..!|||.!! 293 bp :!!:!!|||:!!.! sThrAlaThrAla++ ++LeuMetSerSerTh 1689731 : AACTGCTACCGCGgt.........................agCTAATGAGTTCCAC : 1690050 415 : aMetSerTyrPheThrLeuMetArgGlnSerPheAla : 426 !||||||||||||||||||||||||:!!!!!! ||| rMetSerTyrPheThrLeuMetArgGluArgSerAla 1690051 : AATGTCGTATTTCACGCTCATGAGAGAGAGATCGGCT : 1690088 vulgar: AfOr87 265 426 . KQ414915.1 1688496 1690088 + 429 M 52 156 5 0 2 I 0 812 3 0 2 M 92 276 5 0 2 I 0 289 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688497 1690088 429 + . gene_id 6 ; sequence AfOr87 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688497 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688497 1688652 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690088 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690088 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688497 1690088 429 + . alignment_id 6 ; Query AfOr87 ; Align 1688497 266 156 ; Align 1689469 318 276 ; Align 1690038 410 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 393 Query range: 23 -> 241 Target range: 1680283 -> 1682067 24 : LysAspPheAlaLeuLeuMetThrAlaPheLeuMetLysIleValGlyLeuTrpLe : 42 ||| !!|||:!!:!!! !:!:||| !.!.||||||||||||:!!|||!!!||| LysTyrPheSerIleArgLeuThrArgIleLeuMetLysIleIleGlyPheTrpAs 1680284 : AAATACTTTTCCATTCGACTCACACGGATACTCATGAAAATCATAGGCTTCTGGAA : 1680338 43 : uAlaGluSerLysGluGluGlnArgArgArgHisLeuThrLeuMetTyrThrValV : 61 !!.!:!!!!!!:!..!||||||! !! ! !!..:!!!.!! !:!!|||! !:!!: nValGlnThrArgArgGluGlnLeuIleLeuArgValAsnTyrLeuTyrMetLeuL 1680339 : TGTTCAGACAAGAAGGGAACAGCTGATATTGCGAGTCAACTATCTGTACATGTTGC : 1680395 62 : alAlaIleLeuPheGlyValTrpValGlnPheArgAspPheTyrTyrSerTrpPro : 79 !!!.!:!!! ! ! ..!:!! :!!:!!!!. !|||.!!||||||!!! !!! ! euValLeuSerValSerIleThrIleGluLeuLeuAspLeuTyrTyrCysArgHis 1680396 : TCGTTCTTTCTGTATCTATAACAATCGAATTGTTAGATCTTTATTATTGCCGGCAT : 1680449 80 : AsnPheGly >>>> Target Intron 1 >>>> AsnCysAlaTyrThrAla : 88 :!!!!. ! 849 bp ....!!||||||||| AspLeuTyr++ ++AlaAlaThrTyrThrAla 1680450 : GATTTATATgt.........................aggcAGCGACGTACACTGCT : 1681325 89 : CysAsnIleLeuCysLeuIleMetValLeuLeuLysLeuPheValLeuPheValHi : 107 ||||||! :!! |||.!!:!::!!|||:!!||| ! !!|||!!! :!!!. CysAsnThrIleProLeuPheValIleLeuMetLysThrValValPheThrIleAr 1681326 : TGCAACACGATACCACTTTTCGTAATACTAATGAAGACTGTTGTATTCACGATTCG : 1681382 108 : sArgLysGluPheIleAspLeuLeuValTyrThrHisGluHisPheTrpHisThrA : 126 .|||||||||.!.:!: |||:!!! !!:!.!!!!.:!!:!!||||||||| !! gArgLysGluIleLeuTrpLeuIleGluPheAlaGlnLysTyrPheTrpHisAspL 1681383 : ACGAAAAGAAATACTGTGGCTGATCGAATTTGCCCAAAAATACTTTTGGCACGACA : 1681439 127 : snTyrThrTyrAsnGluLeuLeuLeuValGluLysCysLysArgIleCysMetLeu : 144 !.:!!!:! ! !! ! ! ! !:!!!!:!!. ! ! !:!! !..!:!::!! ysHisSerSerPheGlyLysLysAlaMetAspAsnLeuAspLysArgAlaLeuIle 1681440 : AGCACAGCAGCTTTGGAAAAAAGGCCATGGACAACCTTGACAAGAGAGCCCTAATA : 1681493 145 : CysIleThrLeuIleAsnValCysAlaGlnGlyThrIleValSerTyrValLeuTh : 163 ! !!!::!!! !.!!!.!:!! ! ! !.!|||:!!|||! !|||||||||:! TyrMetSerSerPheThrIleLeuIleTyrAlaThrValValIleTyrValLeuSe 1681494 : TATATGTCCTCTTTCACTATCCTAATTTATGCAACAGTCGTTATATACGTGTTGTC : 1681550 164 : rProIleVal{G} >>>> Target Intron 2 >>>> {lu}AsnIleGlyA : 171 !||||||:!!{|} 161 bp {||}|||||||||! rProIleLeu{G}++ ++{lu}AsnIleGlyL 1681551 : TCCAATTCTT{G}gt.........................ag{aG}AACATCGGGA : 1681735 172 : rgAsnHisSerAspArgValLeuProPheAsnMetTrpValAspLeuProLysLeu : 189 :!!:! !!..!!!:|||:!!||||||||| .!. ! ||| ! ! ! ! ysSerAspGluGluArgIleLeuProPheProPheArgValPheAsnLeuProThr 1681736 : AAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAACTTGCCTACG : 1681789 190 : SerValSerProTyrTyrGluIleLeuPheValLeuGln >>>> Target Int : 203 |||:!!!!!||||||||||||||||||||||||:!!:!! 120 b SerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681790 : TCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt............... : 1681833 204 : ron 3 >>>> ValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAs : 217 p ..!||||||:!! ||| !|||:!!|||!:! !|||||||| ++ThrLeuSerValValHisSerGlyIleCysPheCysCysPheAs 1681834 : ..........agACATTATCTGTGGTGCATTCGGGAATTTGTTTCTGTTGTTTCGA : 1681993 218 : pAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnH : 236 ||||!!!||||||:!!:!!!:!:!!|||!.!!.! !||||||!:!|||||||||: pAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLysIleLeuGlnA 1681994 : CAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAGATTTTACAAA : 1682050 237 : isArgLeuSerSerLeu : 241 !!!:!|||..!!!!:!! snLysLeuGlnThrVal 1682051 : ACAAACTCCAAACAGTA : 1682067 vulgar: AfOr87 23 241 . KQ414915.1 1680283 1682067 + 393 M 59 177 5 0 2 I 0 845 3 0 2 M 84 252 S 0 1 5 0 2 I 0 157 3 0 2 S 1 2 M 35 105 5 0 2 I 0 116 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1680284 1682067 393 + . gene_id 7 ; sequence AfOr87 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1680284 1680460 . + . KQ414915.1 exonerate:protein2genome:local exon 1680284 1680460 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1680461 1680462 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1680461 1681309 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681308 1681309 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1681310 1681562 . + . KQ414915.1 exonerate:protein2genome:local exon 1681310 1681562 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681563 1681564 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681563 1681723 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1681722 1681723 . + . intron_id 1 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1681724 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681724 1681830 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682067 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682067 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1680284 1682067 393 + . alignment_id 7 ; Query AfOr87 ; Align 1680284 24 177 ; Align 1681310 83 252 ; Align 1681726 168 105 ; Align 1681951 203 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 352 Query range: 266 -> 418 Target range: 1695049 -> 1695920 267 : AsnCysTyrAlaThrPheLysLeuCysValLysGlnHisGlnAspArgIleThrTy : 285 :!! !!||| ! !!!.||| !||||||:!! ! ||||||! ! !! ! !|| AspSerTyrLeuGlnLeuLysSerCysValGlnTyrHisGlnAlaLeuThrGlyTy 1695050 : GATAGTTACTTACAATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTA : 1695104 286 : rCysGlnArgLeuAsnAspIlePheThrIleIleValLeuGlyHisIleLeuValP : 304 ||||:!!!:!|||.!.:!!||||||:!!:!::!!|||||||||!!.:!:||| !!. rCysLysLysLeuGluAsnIlePheSerLeuLeuValLeuGlyGlnValLeuPheL 1695105 : TTGCAAAAAGTTGGAGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCC : 1695161 305 : heSerLeuLeuMetCysLeuValGlyPheGlnValLeuMetAlaAsnSerPro{P} : 322 !.:!!:!!:!!:!:||||||||||||!:!|||:!!!!!:!!!.!!:!! ! !{|} euAlaMetValLeuCysLeuValGlyTyrGlnLeuPheLeuValSerLeuGlu{P} 1695162 : TAGCCATGGTACTTTGCCTCGTGGGATATCAGCTATTTCTGGTAAGTTTGGAA{C} : 1695215 323 : >>>> Target Intron 1 >>>> {ro}ThrArgArgLeuIlePheValPh : 330 415 bp {||}:!!|||!.!:!! !!!.|||.! ++ +-{ro}SerArgAsnValGlyLeuValLe 1695216 : gt.........................ac{CT}TCGAGAAACGTCGGATTGGTACT : 1695654 331 : eHisIleThrGlySerLeuCysGlnLeuLeuLeuPheThrTyrSerCysAspSerL : 349 !:!!:!:.!!|||!!!||||||||||||!!!:!!||||||||||||||||||.!!| uAsnLeuAlaGlyThrLeuCysGlnLeuPheMetPheThrTyrSerCysAspGlyL 1695655 : CAACCTGGCAGGCACTTTGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTT : 1695711 350 : euIleGlnGluSerThrAsnValGlySerAlaValTyrSerGlyProTrpIleCys : 367 ||! !::!||||||! !:!!|||.!!!!!||||||!:!:!! !!|||||| ! ! euThrArgGluSerMetAspValSerArgAlaValPheAlaArgProTrpAlaAsn 1695712 : TGACAAGAGAGAGCATGGACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAAT : 1695765 368 : LeuProMetAsnArgThrGlyArgThrLeuArgArgAspLeuLysMetValIleIl : 386 |||||||||:!!|||!.!|||!:!!:!:!!|||!:!..!:!! !|||||||||!! LeuProMetAspArgAsnGlyLysSerValArgGlnSerMetLeuMetValIleMe 1695766 : CTGCCAATGGATAGAAATGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCAT : 1695822 387 : eArgSerArgLysProCysCysLeuThrAlaSerArgPhePheProValSerLeuG : 405 :||||||!.!!:! !|||||||||||||||||| !!||||||||||||||||||| tArgSerAsnArgCysCysCysLeuThrAlaSerGlyPhePheProValSerLeuG 1695823 : GAGGTCGAACAGGTGTTGCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCG : 1695879 406 : luThrCysThrThrValLeuSerThrAlaMetSerTyrPhe : 418 |||||! !||| !|||:!!!:! !! !! !||| !||| luThrTyrThrGlyValIleAsn***AspThrSerIlePhe 1695880 : AGACTTACACTGGGGTAATTAATTAAGATACGTCCATTTTT : 1695920 vulgar: AfOr87 266 418 . KQ414915.1 1695049 1695920 + 352 M 55 165 S 0 1 5 0 2 I 0 411 3 0 2 S 1 2 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1695050 1695920 352 + . gene_id 8 ; sequence AfOr87 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1695050 1695215 . + . KQ414915.1 exonerate:protein2genome:local exon 1695050 1695215 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695216 1695217 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695216 1695630 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1695629 1695630 . + . intron_id 0 ; splice_site "AC" KQ414915.1 exonerate:protein2genome:local cds 1695631 1695920 . + . KQ414915.1 exonerate:protein2genome:local exon 1695631 1695920 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1695050 1695920 352 + . alignment_id 8 ; Query AfOr87 ; Align 1695050 267 165 ; Align 1695633 323 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 312 -> 410 Target range: 1682523 -> 1682814 313 : PheGlnValLeuMetAlaAsnSerProProThrArgArgLeuIlePheValPheHi : 331 ||| ||| !!.!|||.!! ! !! !!:!||||||:!:|||:!! !:! PhePheVal***LysValAsnGlyValLeuMetLysArgLeuLeuPheLeuAsnTy 1682524 : ttctttgtttaaaaGGTGAACGGTGTATTGATGAAACGATTGTTGTTCCTAAATTA : 1682578 332 : sIleThrGlySerLeuCysGlnLeuLeuLeuPheThrTyrSerCysAspSerLeuI : 350 !.!! !|||.!!:!! |||:::...|||...||| !:!|||:!!..!:!!! rPheLeuGlyGlyValIleGlnIlePheLeuIleThrLeuAsnCysAsnAspIleM 1682579 : CTTTCTCGGTGGAGTGATacagatatttttaataacccTAAATTGCAACGACATAA : 1682635 351 : leGlnGluSerThrAsnValGlySerAlaValTyrSerGlyProTrpIleCysLeu : 368 !::!!:!!||| ! !:!!|||!!!|||:!!|||||| !! !||| ! etGluGlnSerGlyAlaIleGlyThrAlaIleTyrSerCysAsnTrpGluArgAsn 1682636 : TGGAGCAAAGTGGCGCTATAGGAACAGCGATCTACAGTTGTAATTGGGAGAGGAAt : 1682689 369 : ProMetAsnArgThrGlyArgThrLeuArgArgAspLeuLysMetValIleIleAr : 387 |||... ::! !!!|||!:!|||:!!! !!!:|||!!::!!|| ValTyrAsnHisPheTyrGln---PheArgLysAspMetMetIleValMetValAr 1682690 : gtttataatcatttttaccAG---TTCAGAAAGGATATGATGATTGTAATGGTACG : 1682743 388 : gSerArgLysProCysCysLeuThrAlaSerArgPhePheProValSerLeuGluT : 406 |:!!!:!:::||||||! !:!!:!!|||:!!!:!|||||||||:!!|||||||||: gAlaLysArgProCysTyrIleSerAlaAlaLysPhePheProIleSerLeuGluS 1682744 : AGCGAAACGTCCTTGCTACATTTCAGCAGCGAAATTCTTTCCAATCTCCCTTGAAT : 1682800 407 : hrCysThrThrVal : 410 !!! !|||! ||| erPheThrLysVal 1682801 : CGTTCACGAaggta : 1682814 vulgar: AfOr87 312 410 . KQ414915.1 1682523 1682814 + 164 M 63 189 G 1 0 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682524 1682814 164 + . gene_id 9 ; sequence AfOr87 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1682524 1682814 . + . KQ414915.1 exonerate:protein2genome:local exon 1682524 1682814 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1682524 1682814 164 + . alignment_id 9 ; Query AfOr87 ; Align 1682524 313 189 ; Align 1682713 377 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 15 -> 82 Target range: 1700440 -> 1700641 16 : AlaArgAspSerSerSerArgGlyLysAspPheAlaLeuLeuMetThrAlaPheLe : 34 !.!||| !!!|||!.!!:!..!!:!||| ! :!!:!! !:!:|||||||||! ValArgMetThrSerLysLysAsnArgAspValSerValSerValThrAlaPheTy 1700441 : GTCAGAATGACTTCGAAGAAGAACAGGGACGTATCAGTGAGCGTCACAGCTTTCTA : 1700495 35 : uMetLysIleValGlyLeuTrpLeuAlaGluSerLysGluGluGlnArgArgArgH : 53 !:!!||||||:!!|||!!!|||||||||!!:!!! ! ||||||:!!||||||||| rLeuLysIleIleGlyPheTrpLeuAlaAspThrTyrGluGluLysArgArgArgL 1700496 : CTTGAAAATCATCGGCTTCTGGTTAGCTGACACTTACGAGGAGAAACGTCGAAGAA : 1700552 54 : isLeuThrLeuMetTyrThrValValAlaIleLeuPheGlyValTrpValGlnPhe : 71 ! !!!.!!! !! ! !|||:!!:!! !:!!:!!! !!.!||| !:!!:!! ! ysPheAlaGlnAsnCysThrIleLeuMetLeuMetCysAlaValLeuLeuGluVal 1700553 : AGTTCGCGCAGAATTGCACGATACTTATGCTTATGTGCGCTGTGCTGCTTGAGGTG : 1700606 72 : ArgAspPheTyrTyrSerTrpProAsnPheGly : 82 ||||||.!!|||:!!! !||| !:!!|||||| ArgAspIleTyrHisIleTrpGlyAspPheGly 1700607 : AGGGATATCTATCACATCTGGGGAGATTTCGGC : 1700641 vulgar: AfOr87 15 82 . KQ414915.1 1700440 1700641 + 144 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1700441 1700641 144 + . gene_id 10 ; sequence AfOr87 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1700441 1700641 . + . KQ414915.1 exonerate:protein2genome:local exon 1700441 1700641 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1700441 1700641 144 + . alignment_id 10 ; Query AfOr87 ; Align 1700441 16 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 15 -> 82 Target range: 1704888 -> 1705089 16 : AlaArgAspSerSerSerArgGlyLysAspPheAlaLeuLeuMetThrAlaPheLe : 34 !.!||| !!!|||!.!!:!..!!:!||| ! :!!:!! !:!:|||||||||! ValArgMetThrSerLysLysAsnArgAspValSerValSerValThrAlaPheTy 1704889 : GTCAGAATGACTTCGAAGAAGAACAGGGACGTATCAGTGAGCGTCACAGCTTTCTA : 1704943 35 : uMetLysIleValGlyLeuTrpLeuAlaGluSerLysGluGluGlnArgArgArgH : 53 !:!!||||||:!!|||!!!|||||||||!!:!!! ! ||||||:!!||||||||| rLeuLysIleIleGlyPheTrpLeuAlaAspThrTyrGluGluLysArgArgArgL 1704944 : CTTGAAAATCATCGGCTTCTGGTTAGCTGACACTTACGAGGAGAAACGTCGAAGAA : 1705000 54 : isLeuThrLeuMetTyrThrValValAlaIleLeuPheGlyValTrpValGlnPhe : 71 ! !!!.!!! !! ! !|||:!!:!! !:!!:!!! !!.!||| !:!!:!! ! ysPheAlaGlnAsnCysThrIleLeuMetLeuMetCysAlaValLeuLeuGluVal 1705001 : AGTTCGCGCAGAATTGCACGATACTTATGCTTATGTGCGCTGTGCTGCTTGAGGTG : 1705054 72 : ArgAspPheTyrTyrSerTrpProAsnPheGly : 82 ||||||.!!|||:!!! !||| !:!!|||||| ArgAspIleTyrHisIleTrpGlyAspPheGly 1705055 : AGGGATATCTATCACATCTGGGGAGATTTCGGC : 1705089 vulgar: AfOr87 15 82 . KQ414915.1 1704888 1705089 + 144 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1704889 1705089 144 + . gene_id 11 ; sequence AfOr87 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1704889 1705089 . + . KQ414915.1 exonerate:protein2genome:local exon 1704889 1705089 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1704889 1705089 144 + . alignment_id 11 ; Query AfOr87 ; Align 1704889 16 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 24 -> 78 Target range: 1710221 -> 1710383 25 : AspPheAlaLeuLeuMetThrAlaPheLeuMetLysIleValGlyLeuTrpLeuAl : 43 |||!!.!.!!!! !:!!|||:!!.!.!!!:!!|||!!::!!|||||||||:!!|| AspLeuGlyPheSerValThrSerMetPheValLysMetIleGlyLeuTrpMetAl 1710222 : GACTTAGGTTTCAGCGTGACTTCGATGTTCGTGAAAATGATCGGATTGTGGATGGC : 1710276 44 : aGluSerLysGluGluGlnArgArgArgHisLeuThrLeuMetTyrThrValValA : 62 |:!!!:!:!! ||||||!.! !|||:!!:!!||||||.!.|||||| aLysAsnGlnPheGluGlnHisValArgAsnValThrLeuPheTyrThrPhePheP 1710277 : GAAAAATCAGTTCGAGCAACATGTCAGAAACGTGACGTTGTTCTACacattcttct : 1710333 63 : laIleLeuPheGlyValTrpValGlnPheArgAspPheTyrTyrSerTrp : 78 ::: |||||| !!!::|||:!! !! !:!!.!.|||:!!|||||| heValSerPheGlyPheTyrValGluAlaThrAsnLeuTyrHisSerTrp 1710334 : tcgtttccttcGGATTCTACGTGGAAGCTACGAACCTGTACCACTCGTGG : 1710383 vulgar: AfOr87 24 78 . KQ414915.1 1710221 1710383 + 121 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1710222 1710383 121 + . gene_id 12 ; sequence AfOr87 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1710222 1710383 . + . KQ414915.1 exonerate:protein2genome:local exon 1710222 1710383 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1710222 1710383 121 + . alignment_id 12 ; Query AfOr87 ; Align 1710222 25 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 18 -> 78 Target range: 1685754 -> 1685934 19 : SerSerSerArgGlyLysAspPheAlaLeuLeuMetThrAlaPheLeuMetLysIl : 37 ..!:!!!!!!:! !!:!|||.!!:!!||| ||||||:::|||:: GlnAlaThrLysTyrArgAspIleSerLeuLysCysGlyIlePheLeuLeuLysLe 1685755 : CAGGCGACAAAATACAGGGATATTTCCCTCAAgtgtggaatttttcttttgaaatt : 1685809 38 : eValGlyLeuTrpLeuAlaGluSerLysGluGluGlnArgArgArgHisLeuThrL : 56 :||||||||||||:!!:!! !!:!!..! |||:!!|||||||||...!!!|||| uValGlyLeuTrpMetSerMetAsnSerValGluGluArgArgArgArgPheThrL 1685810 : agtCGGCCTCTGGATGTCCATGAACAGCGTCGAGGAGCGTCGAAGGAGGTTCACGT : 1685866 57 : euMetTyrThrValValAlaIleLeuPheGlyValTrpValGlnPheArgAspPhe : 74 ||.!. :!!||| !!|||:!!! !!:!||||||!::|||.!. ! !.!|||.!! euPheGlySerValPheAlaLeuSerTyrGlyValTyrValAsnValAsnAspIle 1685867 : TGTTCGGATCAGTTTTCGCCCTTTCTTACGGCGTTTACGTGAACGTAAACGATATT : 1685920 75 : TyrTyrSerTrp : 78 !:!!|||!:: LeuHisSerPhe 1685921 : CTTCACAGCTTC : 1685934 vulgar: AfOr87 18 78 . KQ414915.1 1685754 1685934 + 118 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1685755 1685934 118 + . gene_id 13 ; sequence AfOr87 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1685755 1685934 . + . KQ414915.1 exonerate:protein2genome:local exon 1685755 1685934 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1685755 1685934 118 + . alignment_id 13 ; Query AfOr87 ; Align 1685755 19 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 167 -> 203 Target range: 1688056 -> 1688161 168 : AsnIleGlyArgAsnHisSerAspArgValLeuProPheAsnMetTrpValAspLe : 186 |||!!:.!!|||||| ! |||||||||||||||||||||!!.||||||||||||! AsnMetSerArgAsnLysSerAspArgValLeuProPheLysMetTrpValAspTr 1688057 : AATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTGGGTCGATTG : 1688111 187 : uProLysLeuSerValSerProTyrTyrGluIleLeuPheValLeuGlnVal : 203 !||| ||||||! !!!!||||||||||||:!::!!|||..!!!!|||||| pPro---LeuSerAspThrProTyrTyrGluLeuMetPheThrPheGlnVal 1688112 : GCCG---CTATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAGGTA : 1688161 vulgar: AfOr87 167 203 . KQ414915.1 1688056 1688161 + 117 M 20 60 G 1 0 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688057 1688161 117 + . gene_id 14 ; sequence AfOr87 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1688057 1688161 . + . KQ414915.1 exonerate:protein2genome:local exon 1688057 1688161 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1688057 1688161 117 + . alignment_id 14 ; Query AfOr87 ; Align 1688057 168 60 ; Align 1688117 189 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr77 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 797 Query range: 151 -> 401 Target range: 1711237 -> 1713321 152 : AsnIleGlyLysAsnGluSerGluArgValLeuProPheAsnMetTrpValAsnLe : 170 |||||||||!:!|||||||||!!:|||:!!|||||||||!!.||||||:!!:!!:! AsnIleGlyArgAsnGluSerAspArgIleLeuProPheLysMetTrpIleAspIl 1711238 : AATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTGGATTGATAT : 1711292 171 : uProLeuSerThrSerProTyrTyrGluIleValPheThrIleGln >>>> Tar : 186 !||| !|||! !!!!||||||:::|||||| ||||||:!!||| eProThrSerMetThrProTyrPheGluIlePhePheThrLeuGln++ 1711293 : ACCGACATCGATGACACcgtattttgaaatattcttcaccTTACAGgt........ : 1711342 187 : get Intron 1 >>>> AlaLeuSerLeuTyrHisValGlyIleGlyTyrPheC : 198 546 bp !.!|||||| !|||!!.:!!|||:!:.!!||| !| ++ValLeuSerAlaTyrGlnIleGlyValSerTyrGlyC 1711343 : .................agGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGGTT : 1711922 199 : ysPheAspAsnLeuLeuCysValPheAsnLeuGlnLeuAlaGlyGlnPheGlnIle : 216 |||||||||||:!!||||||:!!.!.||||||!!.|||||| !||||||!:!||| ysPheAspAsnValLeuCysIleMetAsnLeuHisLeuAlaThrGlnPheArgIle 1711923 : GCTTCGACAACGTTCTATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAATA : 1711976 217 : LeuGlnTyrLysMetAlaAsnIleAlaAspLeu<-><-><-><->IleGluGluLy : 231 ||||||:!!!:!:!!!.!|||||| !! !||| ! ! !||||| LeuGlnHisArgLeuValAsnIleAsnGlyLeuLysSerLysGlnThrProGluLy 1711977 : CTGCAACATAGACTGGTGAATATAAACGGTCTGAAGAGCAAACAGACACCGGAGAA : 1712033 232 : sAsnGluLysGlyIleValSerSerProArgPheAlaLysLysCysTyrAlaAlaP : 250 |..!|||! !..!|||:!!..!||| !!..!|||||| ! !!.! !|||! !!.!| sGlyGluThrSerIleIleAspSerThrGluPheAlaAspAsnSerTyrAspValP 1712034 : AGGTGAAACGTCGATTATAGATTCGACAGAATTTGCGGATAACTCTTACGACGTTT : 1712090 251 : heLysAsnTyrValArgGluHisGlnAlaLeuIleAlaPheCysGluLysLeuGlu : 268 |||||!..! !||||||:!!||||||:!!|||!!:||||||||||||||||||||| heLysArgCysValArgGlnHisGlnSerLeuMetAlaPheCysGluLysLeuGlu 1712091 : TCAAAAGATGCGTTCGTCAACATCAATCTCTGATGGCTTTCTgcgagaaactcgaa : 1712144 269 : LysValPheSerLeuIleIleLeuTrpGlnValLeuMetPheSerLeuIleIleCy : 287 ::::::||||||:!!||||||||| !!|||:!!|||:!!||||||:!!.!!!!:|| GluMetPheSerMetIleIleLeuGlyGlnLeuLeuValPheSerIlePheMetCy 1712145 : gaaatgTTCAGTATGATTATACTGGGGCAATTGTTAGTGTTCAGTATTTTTATGTG : 1712201 288 : sLeuAspGlyTyrGlnIleLeuLeu >>>> Target Intron 2 >>>> Pr : 296 |||||||! !! !|||:!!|||||| 142 bp || sLeuAspValCysGlnValLeuLeu++ ++Pr 1712202 : TCTCGACGTGTGCCAAGTACTTCTGgt.........................agCC : 1712370 297 : oGluSerProValArgArgArgLeuIlePheAlaPheHisLeuAlaAlaCysMetC : 315 |! :!! !!||| !!!:!!:!:::||||||...||||||||||||!.!||||||| oGlyAlaSerValGlyLysGlnMetIlePheThrPheHisLeuAlaGlyCysMetC 1712371 : AGGTGCATCTGTGGGTAAACAGAtgattttcacgtttcacctAGCGGGATGTATGT : 1712427 316 : ysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleGlnGluSerSerSer : 333 ||||||||||||||||||||||||||||||||||||||||| !||||||! !!:! ysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleThrGluSerLeuAsn 1712428 : GTCAATTGCTGATGTTTACGTACAGCTGCGATTGTATAATAACGGAAAGTTTGAAC : 1712481 334 : IleAlaSerAlaValTyrAspGlyProTrpProPheLeuPheGluThrThrSerGl : 352 :!:.!!..!|||||||||||||||||||||||| !||| !!:!|||!!!|| ValThrGluAlaValTyrAspGlyProTrpProArgLeuProMetSerThrArgGl 1712482 : GTGACGGAAGCGGTGTACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGG : 1712538 353 : yArgThrMetArgLysAspLeuThrLeuValIleLeuArgSerAlaValProCysC : 371 ||||! !!!:||||||||||||! !|||||||||:!!|||||| !|||||||||| yArgMetIleArgLysAspLeuIleLeuValIleIleArgSerArgValProCysC 1712539 : AAGAATGATAAGGAAGGATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTT : 1712595 372 : ysLeuThrAlaArgGlyPhePheValValSerLeuGluThrTyrThrArg >>>> : 388 ||||||||||||||||||||||||||:!!||||||||||||||||||!:! ysLeuThrAlaArgGlyPhePheValIleSerLeuGluThrTyrThrLys++ 1712596 : GCTTGACCGCCAGAGGATTCTTCGTAATATCTTTGGAAACGTATACGAAGgt.... : 1712648 389 : Target Intron 3 >>>> ValLeuSerThrAlaValSerTyrPheThrLeu : 398 634 bp |||:!!||||||||||||||||||||||||||| ++ValIleSerThrAlaValSerTyrPheThrLeu 1712649 : .....................agGTTATAAGTACAGCAGTGTCGTACTTCACACTG : 1713310 399 : LeuArgGln : 401 ||||||||| LeuArgGln 1713311 : TTAAGGCAA : 1713321 vulgar: AfOr77 151 401 . KQ414915.1 1711237 1713321 + 797 M 34 102 5 0 2 I 0 542 3 0 2 M 42 126 G 0 12 M 68 204 5 0 2 I 0 138 3 0 2 M 92 276 5 0 2 I 0 630 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711238 1713321 797 + . gene_id 1 ; sequence AfOr77 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1711238 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711238 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712227 . + . insertions 12 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712228 1712229 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712228 1712369 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1712368 1712369 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1712370 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712370 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713321 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713321 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711238 1713321 797 + . alignment_id 1 ; Query AfOr77 ; Align 1711238 152 102 ; Align 1711886 186 126 ; Align 1712024 228 204 ; Align 1712370 296 276 ; Align 1713280 388 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr77 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 755 Query range: 4 -> 295 Target range: 1697515 -> 1699971 5 : AsnThrAspAspIleSerMetIleMetThrAlaThrPheMetLysLeuValGlyLe : 23 :!!||| ! |||.!!:!!:!!:!!||||||:!! !!!.||||||:!!|||||||| HisThrLysAspPheAlaLeuLeuMetThrSerPheLeuMetLysIleValGlyLe 1697516 : CACACCAAAGATTTTGCTCTGTTAATGACGTCGTTTTTAATGAAGATCGTCGGTCT : 1697570 24 : uTrpThrAlaLysAspArgHisGluGlnArgAlaArgLysPheAlaLeuIleTyrT : 42 |||| !|||||||||!!! ! |||:!!||| !|||::!!:!.!!|||||||||| uTrpLeuAlaLysAspSerLysGluGluArgLysArgArgTyrThrLeuIleTyrT 1697571 : TTGGTTAGCGAAAGACAGCAAGGAGGAACGCAAGCGTCGGTACACTTTGATCTATA : 1697627 43 : hrLeuAlaThrIleLeuPheAlaLeuTrpIleGluPheThrAspPheTyrTyrSer : 60 ||:!!!.!.!!|||||||||!.!:!!|||:!::!!|||! !||||||||||||||| hrValValAlaIleLeuPheGlyValTrpValGlnPheArgAspPheTyrTyrSer 1697628 : CGGTGGTCGCGATTTTGTTTGGAGTGTGGGTGCAGTTCAGAGACTTCTATTACTCC : 1697681 61 : PheGlyAspPheSer >>>> Target Intron 1 >>>> ThrCysLeuPhe : 69 !:: !:!!|||.!! 849 bp !||| !!:! TrpProAsnPheGly++ ++AspCysAlaTyr 1697682 : TGGCCGAATTTTGGCgt.........................aggACTGTGCTTAC : 1698557 70 : AsnValCysAsnIleMetTyrIleThrMetProLeuLeuLysIlePheIleIleVa : 88 !.!!.!|||||||||:!:! !:!:! !||| !|||||||||:!:|||:!!:!! ! ThrAlaCysAsnIleLeuCysLeuIleMetValLeuLeuLysLeuPheValValPh 1698558 : ACCGCTTGTAACATTCTCTGCCTGATTATGGTACTGTTAAAGCTGTTCGTTGTATT : 1698614 89 : lSerAsnLysLysAspPhePheTyrLeuIlePheTyrThrGlnAsnAsnPheTyrL : 107 !! !:!!!:!|||!!:|||.!! ! |||::: ||| ...||||||::: eIleHisArgLysGluPheIleGluLeuLeuValTyrMetTyrLysAsnPheTrpH 1698615 : CATACACAGGAAAGAATTCATCGAACTgcttgtatatatgtacaaaaatttttggc : 1698671 108 : ysAspAsnTyrAsnAsnLysArgGluGlnGlnIlePheThrAsnCysArgArgGln : 125 ! !|||||| :!! !.!|||! !! !:!:.!. !:!!||||||||| isLeuAsnTyr---AspCysAsnGluLeuLeuLeuLeuGlnAspCysArgArgIle 1698672 : ACCTCAATTAC---GATTGCAACGAACTACTACTGCTGCAAGACTGCAGAAGAATT : 1698722 126 : CysThrIlePheValCysPheLeuThrPheSerThrLysGlyThrLeuValCysTy : 144 !!||||||! !:!! !!.:!!!.!|||!!!.!!:!!||||||:!!||| !!|| SerThrIleCysIleThrLeuIleAsnPheCysAlaGlnGlyThrIleValSerTy 1698723 : AGCACTATATGTATCACGTTGATTAACTTCTGTGCTCAAGGCACAATTGTCAGCTA : 1698779 145 : rIleIleSerProLeuVal{G} >>>> Target Intron 2 >>>> {lu}A : 152 |:!::!!!!!|||:!!:!!{!} 232 bp { !}| rValLeuThrProIleIle{A}++ ++{la}A 1698780 : CGTGCTAACACCTATTATA{G}gt.........................ag{ca}a : 1699035 153 : snIleGlyLysAsnGluSerGluArgValLeuProPheAsnMetTrpValAsnLeu : 170 ||||||||:::|||...|||!!:|||||||||||||||||||||||||||:!!||| snIleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTrpValAspLeu 1699036 : atattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTGGGTTGATTTG : 1699089 171 : ProLeuSerThrSerProTyrTyrGluIleValPheThrIleGln >>>> Targ : 186 |||||||||..!|||||| |||||||||||||||..!:!!||| ProLeuSerValSerProThrTyrGluIleValPheValLeuGln++ 1699090 : CCGCTGTCTGTGTCACCAACGTACGAAATAGTGTTCGTGCTTCAGgt......... : 1699139 187 : et Intron 3 >>>> AlaLeuSerLeuTyrHisValGlyIleGlyTyrPheCy : 198 499 bp !.!|||||||||||||||||||||:!! !!|||.!!|| ++ValLeuSerLeuTyrHisValGlyValCysTyrIleCy 1699140 : ................agGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTG : 1699672 199 : sPheAspAsnLeuLeuCysValPheAsnLeuGlnLeuAlaGlyGlnPheGlnIleL : 217 |||||||||||||||||||:!!.!.||||||!!. !||| !||||||!::|||| sPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleL 1699673 : CTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATAC : 1699729 218 : euGlnTyrLysMetAlaAsnIleAlaAspLeuIleGluGluLys<-><->AsnGlu : 233 ||||||||!:!:!::!!|||:!:!.!||| !! !..!:!!:!! :!!.!. euGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsn 1699730 : TGCAATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAAT : 1699783 234 : LysGlyIleValSerSerProArgPheAlaLysLysCysTyrAlaAlaPheLysAs : 252 :!!..!! !!.!:!! ! !!|||||||||:!!!!.|||||| !||||||||||| GluSerSerAlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAs 1699784 : GAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAA : 1699840 253 : nTyrValArgGluHisGlnAlaLeuIleAlaPheCysGluLysLeuGluLysValP : 271 |! !||||||:!!|||||| !! !|||.!!!:!|||.!.!:!|||.!.:!!:!!| nCysValArgGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIleP 1699841 : TTGCGTACGACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATAT : 1699897 272 : heSerLeuIleIleLeuTrpGlnValLeuMetPheSerLeuIleIleCysLeuAsp : 289 ||!!!:!!|||:!!||| ! !!.:!!|||:!:|||||||||:!:|||||||||! ! heThrValIleValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuVal 1699898 : TCACGGTCATTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTT : 1699951 290 : GlyTyrGlnIleLeuLeu : 295 |||!:!|||:!:|||:!! GlyPheGlnValLeuVal 1699952 : GGATTCCAAGTGCTCGTA : 1699971 vulgar: AfOr77 4 295 . KQ414915.1 1697515 1699971 + 755 M 61 183 5 0 2 I 0 845 3 0 2 M 45 135 G 1 0 M 39 117 S 0 1 5 0 2 I 0 228 3 0 2 S 1 2 M 34 102 5 0 2 I 0 495 3 0 2 M 46 138 G 0 6 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1697516 1699971 755 + . gene_id 2 ; sequence AfOr77 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1697516 1697698 . + . KQ414915.1 exonerate:protein2genome:local exon 1697516 1697698 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1697699 1697700 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1697699 1698547 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1698546 1698547 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1698548 1698800 . + . KQ414915.1 exonerate:protein2genome:local exon 1698548 1698800 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1698801 1698802 . + . intron_id 2 ; splice_site "Gt" KQ414915.1 exonerate:protein2genome:local intron 1698801 1699032 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1699031 1699032 . + . intron_id 1 ; splice_site "Ag" KQ414915.1 exonerate:protein2genome:local cds 1699033 1699136 . + . KQ414915.1 exonerate:protein2genome:local exon 1699033 1699136 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699137 1699138 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699137 1699635 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1699634 1699635 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699636 1699971 . + . KQ414915.1 exonerate:protein2genome:local exon 1699636 1699971 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1697516 1699971 755 + . alignment_id 2 ; Query AfOr77 ; Align 1697516 5 183 ; Align 1698548 66 135 ; Align 1698683 112 117 ; Align 1699035 152 102 ; Align 1699636 186 138 ; Align 1699780 232 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr77 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 701 Query range: 150 -> 405 Target range: 1706998 -> 1709249 151 : GluAsnIleGlyLysAsnGluSerGluArgValLeuProPheAsnMetTrpValAs : 169 |||!::||||||||||||||||||:!:|||:!!||| ! !!|||.!.|||:!!:! GluSerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAs 1706999 : GAAAgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGA : 1707053 170 : nLeuProLeuSerThrSerProTyrTyrGluIleValPheThrIleGln >>>> : 186 !!!!||| !!!!! !!!!|||||||||||||||:!!|||||| ||| pPheProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707054 : CTTTCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt..... : 1707106 187 : Target Intron 1 >>>> AlaLeuSerLeuTyrHisValGlyIleGlyTyrP : 197 276 bp !.!!!!! !:!! :!!||| !!|||.!!|||. ++ValPheIleValMetTyrValCysIleSerTyrL 1707107 : ....................agGTTTTTATCGTAATGTACGTTTGCATAAGCTACC : 1707413 198 : heCysPheAspAsnLeuLeuCysValPheAsnLeuGlnLeuAlaGlyGlnPheGln : 215 !!|||.!!||||||!!!||||||:!!.!!||||||!!. !||| !||||||!:! euCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArg 1707414 : TTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGA : 1707467 216 : IleLeuGlnTyrLysMetAlaAsnIleAlaAspLeuIleGluGluLysAsnGluLy : 234 ||||||||||||!:!:!!:!!|||:!:..!! ! !.!.|||:::!:::::|| IleLeuGlnTyrArgLeuSerAsnValCysGly---AlaAsnGluArgSerAspLy 1707468 : ATATTGCAATACAGACTGTCGAATGTGTGCGGT---GCAAACGAACGTAgcgataa : 1707521 235 : sGlyIleValSerSerProArgPheAlaLysLysCysTyrAlaAlaPheLysAsnT : 253 | ...:::||| ! !:!! ! :!!||||||||| !|||||||||! sIleSerLysLysThrProSerAsnSerAspGluCysTyrAlaLysPheLysAsnC 1707522 : aatttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAAATT : 1707578 254 : yrValArgGluHisGlnAlaLeuIleAlaPheCysGluLysLeuGluLysValPhe : 271 !:!!!:!:!!|||||||||||||||! !!:!|||.!.:!!|||:!!:!!|||||| ysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluValPhe 1707579 : GCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGGTGTTC : 1707632 272 : SerLeuIleIleLeuTrpGlnValLeuMetPheSerLeuIleIleCysLeuAspGl : 290 .!!|||.!!:!:||| |||||||||:!:|||||||||:!!!!:||||||||||| GlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAspGl 1707633 : GGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGG : 1707689 291 : yTyrGlnIleLeuLeu >>>> Target Intron 2 >>>> ProGluSerPr : 299 |||| :!::!!:!! 457 bp !!!:!!!|| yTyr---LeuValMet++ ++GluAspThrPr 1707690 : ATAT---TTGGTGATGgt.........................agGAAGATACTCC : 1708170 300 : oValArgArgArgLeuIlePheAlaPheHisLeuAlaAlaCysMetCysGlnLeuL : 318 |:!!! !!:!||||||! !||| !|||||||||.!!!.!|||:!!|||||||||| oIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuL 1708171 : CATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGT : 1708227 319 : euMetPheThrTyrSerCysAspCysIleIleGlnGluSerSerSerIleAlaSer : 336 ||||||||||||||||||||||||||:!:|||!:!||||||! !!:!:!:|||!:! euMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsn 1708228 : TGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAAT : 1708281 337 : AlaValTyrAspGlyProTrpProPheLeuPheGluThrThrSerGlyArgThrMe : 355 |||:!!|||||| !! !!||| ! !||| ! !! !|||||||||! !:! AlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLe 1708282 : GCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCT : 1708338 356 : tArgLysAspLeuThrLeuValIleLeuArgSerAlaValProCysCysLeuThrA : 374 !|||||||||||||||!!!|||||| !|||||| !||||||||||||||||||| uArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrA 1708339 : GCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTG : 1708395 375 : laArgGlyPhePheValValSerLeuGluThrTyrThrArg >>>> Target I : 388 || !!||||||||| !||||||||||||||||||||| ! 759 laCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708396 : CTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt............. : 1708439 389 : ntron 3 >>>> ValLeuSerThrAlaValSerTyrPheThrLeuLeuArgGln : 401 bp :!!||||||||||||!.!|||||||||||||||||||||:!! ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgLys 1708440 : ............agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTACGAAAA : 1709235 402 : SerThrLeuGlu : 405 ..! ! !||| GlnGluAlaGlu 1709236 : CAAGAAGCAGAA : 1709249 vulgar: AfOr77 150 405 . KQ414915.1 1706998 1709249 + 701 M 35 105 5 0 2 I 0 272 3 0 2 M 41 123 G 1 0 M 64 192 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1706999 1709249 701 + . gene_id 3 ; sequence AfOr77 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1706999 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1706999 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709249 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709249 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1706999 1709249 701 + . alignment_id 3 ; Query AfOr77 ; Align 1706999 151 105 ; Align 1707380 186 123 ; Align 1707503 228 192 ; Align 1707695 293 9 ; Align 1708161 296 276 ; Align 1709196 388 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr77 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 656 Query range: 148 -> 404 Target range: 1694346 -> 1696263 149 : LeuValGluAsnIleGlyLysAsnGluSerGluArgValLeuProPheAsnMetTr : 167 !!!:!!! !|||:!!|||||||||:!!|||||||||:!!||||||||||||||||| PheLeuAlaAsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTr 1694347 : TTTTTAGCAAATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTG : 1694401 168 : pValAsnLeuProLeuSerThrSerProTyrTyrGluIleValPheThrIleGln : 186 ||||:!!!!!||| !.!! !|||||||||||||||:!!:!!|||! !|||||| pValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGln+ 1694402 : GGTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGg : 1694458 187 : >>>> Target Intron 1 >>>> AlaLeuSerLeuTyrHisValGlyIleG : 195 409 bp .!!|||!!!:!!||||||||||||||| + ++ThrLeuCysValTyrHisValGlyIleC 1694459 : t.........................agACACTTTGCGTGTACCATGTCGGTATAT : 1694894 196 : lyTyrPheCysPheAspAsnLeuLeuCysValPheAsnLeuGlnLeuAlaGlyGln : 213 !!|||.!.||||||||||||:!!||| !!:!!.!.||||||!!.:!!||| !||| ysTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGln 1694895 : GTTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAA : 1694948 214 : PheGlnIleLeuGlnTyrLysMetAlaAsnIleAlaAspLeuIleGluGluLysAs : 232 |||!::||||||||||||::!.!. !|||:!:::!:!!:!!||||||:!!:!!!. PheArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLysGlnTh 1694949 : TTTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAAC : 1695005 233 : nGlu<-><->LysGlyIleValSerSerProArgPheAlaLysLysCysTyrAlaA : 249 .!!: ::: :::...! ! !!!.!|||.!! ! !!||| ! rAspGlyArgGluLeuGluIleGlyTyrThrAsnPheThrValAspSerTyrLeuG 1695006 : AGACGGTcgagaattggaaattggtTACACAAATTTCACAGTCGATAGTTACTTAC : 1695062 250 : laPheLysAsnTyrValArgGluHisGlnAlaLeuIleAlaPheCysGluLysLeu : 267 !!!.|||!:!! !|||!:! ! ||||||||||||! !!.!!:!|||:!!|||||| lnLeuLysSerCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeu 1695063 : AATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTG : 1695116 268 : GluLysValPheSerLeuIleIleLeuTrpGlnValLeuMetPheSerLeuIleIl : 286 |||!!.:!!|||||||||:!!:!:||| ! |||||||||.!..!.:!!:!!:!!:! GluAsnIlePheSerLeuLeuValLeuGlyGlnValLeuPheLeuAlaMetValLe 1695117 : GAGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTACT : 1695173 287 : eCysLeuAspGlyTyrGlnIleLeuLeu >>>> Target Intron 2 >>>> : 296 !||||||! |||||||||:!!!!!||| 415 bp uCysLeuValGlyTyrGlnLeuPheLeu++ + 1695174 : TTGCCTCGTGGGATATCAGCTATTTCTGgt.........................a : 1695616 297 : ProGluSerProValArgArgArgLeuIlePheAlaPheHisLeuAlaAlaCysM : 314 !!!!:|||||| ! !|||!.!:!! !!!.!.!.!!:!!||||||!.! !: +ThrAspSerProProSerArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrL 1695617 : gACAGACTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTT : 1695672 315 : etCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleGlnGluSerSer : 332 !!|||||||||!!!||||||||||||||||||||| !!:!:! !::!||||||! ! euCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGluSerMet 1695673 : TGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATG : 1695726 333 : SerIleAlaSerAlaValTyrAspGlyProTrpProPheLeuPheGluThrThrSe : 351 ..!:!!::!!!!||||||!:!! !!|||||| !! !||| ! !! !!: AspValSerArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAspArgAs 1695727 : GACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAA : 1695783 352 : rGlyArgThrMetArgLysAspLeuThrLeuValIleLeuArgSerAlaValProC : 370 !|||!:!!:!:!!|||:!!..!:!! !:!!||||||:!!|||||| ! ! !| nGlyLysSerValArgGlnSerMetLeuMetValIleMetArgSerAsnArgCysC 1695784 : TGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTT : 1695840 371 : ysCysLeuThrAlaArgGlyPhePheValValSerLeuGluThrTyrThrArg > : 388 ||||||||||||||!!!||||||||| !||||||||||||||||||||| !! ysCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrGly++ 1695841 : GCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGgt. : 1695896 389 : >>> Target Intron 3 >>>> ValLeuSerThrAlaValSerTyrPheThr : 397 319 bp |||||||||||||||:!!|||||||||||| ++ValLeuSerThrAlaMetSerTyrPheThr 1695897 : ........................agGTCCTCAGCACTGCAATGTCATACTTTACA : 1696240 398 : LeuLeuArgGlnSerThrLeu : 404 ||||||||||||||||||:!! LeuLeuArgGlnSerThrMet 1696241 : CTACTGAGACAATCGACTATG : 1696263 vulgar: AfOr77 148 404 . KQ414915.1 1694346 1696263 + 656 M 37 111 5 0 2 I 0 405 3 0 2 M 48 144 G 0 6 M 62 186 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694347 1696263 656 + . gene_id 4 ; sequence AfOr77 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694347 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694347 1694457 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 2 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696263 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696263 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694347 1696263 656 + . alignment_id 4 ; Query AfOr77 ; Align 1694347 149 111 ; Align 1694867 186 144 ; Align 1695017 234 186 ; Align 1695618 296 276 ; Align 1696213 388 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr77 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 516 Query range: 184 -> 394 Target range: 1702013 -> 1703256 185 : GlnAlaLeuSerLeuTyrHisValGlyIleGlyTyrPheCysPheAspAsnLeuLe : 203 |||!.!|||||||||||||||||||||:!! !!|||.!!||||||||||||||||| GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 204 : uCysValPheAsnLeuGlnLeuAlaGlyGlnPheGlnIleLeuGlnTyrLysMetA : 222 ||||:!!.!.||||||!!. !||| !||||||!::||||||||||||!:!:!:: uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 223 : laAsnIleAlaAspLeuIleGluGluLys<-><->AsnGluLysGlyIleValSer : 238 !!|||:!:!.!||| !! !..!:!!:!! :!!.!.:!!..!! !!.!:!! erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1702179 239 : SerProArgPheAlaLysLysCysTyrAlaAlaPheLysAsnTyrValArgGluHi : 257 ! !!|||||||||:!!!!.|||||| !||||||||||||! !||||||:!!|| LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHi 1702180 : CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACA : 1702236 258 : sGlnAlaLeuIleAlaPheCysGluLysLeuGluLysValPheSerLeuIleIleL : 276 |||| !! !|||.!!!:!|||.!.!:!|||.!.:!!:!!|||!!!:!!|||:!!| sGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValL 1702237 : TCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTAC : 1702293 277 : euTrpGlnValLeuMetPheSerLeuIleIleCysLeuAspGlyTyrGlnIleLeu : 294 || ! !!.:!!|||:!:|||||||||:!:|||||||||! !|||!:!|||:!:||| euGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeu 1702294 : TCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTC : 1702347 295 : LeuProGluSerProVal{A} >>>> Target Intron 1 >>>> {rg}Ar : 302 :!! !...! ! !! !{!} 607 bp { !}|| ValValArgPheValGlu{P}-+ ++{ro}Ar 1702348 : GTGGTACGTTTCGTTGAA{C}ct.........................ag{CG}AG : 1702978 303 : gArgLeuIlePheAlaPheHisLeuAlaAlaCysMetCysGlnLeuLeuMetPheT : 321 |||||||! !|||!.!||||||:!!!.!!.! !!:!:||||||||||||:!:|||| gArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLeuLeuPheT 1702979 : GCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATTGCTATTTA : 1703035 322 : hrTyrSerCysAspCysIleIleGlnGluSerSerSerIleAlaSerAlaValTyr : 339 |||||||||||||| !!:!:|||:!!||||||!!!!:!|||!.!!!!|||:!!||| hrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaIleTyr 1703036 : CCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGATATAC : 1703089 340 : AspGlyProTrpProPheLeuPheGluThrThrSerGlyArgThrMetArgLysAs : 358 !||||||||| ! !||| ! !! !:!!||||||! !:!!|||!:!|| LeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArgArgAs 1703090 : CTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGAAGAGA : 1703146 359 : pLeuThrLeuValIleLeuArgSerAlaValProCysCysLeuThrAlaArgGlyP : 377 |||||||:!!||||||:!!|||||| ! ! !! !!||||||||||||!!!|||| pLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSerGlyP 1703147 : CTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAGCGGAT : 1703203 378 : hePheValValSerLeuGluThrTyrThrArgValLeuSerThrAlaValSer : 394 ||||| !|||||||||||||||! !|||! !|||!!!!:! !:!! !!||| hePheProValSerLeuGluThrCysThrThrValPheAsnPheSerPheSer 1703204 : TCTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATTTCTCATTCTCT : 1703256 vulgar: AfOr77 184 394 . KQ414915.1 1702013 1703256 + 516 M 47 141 G 0 6 M 69 207 S 0 1 5 0 2 I 0 603 3 0 2 S 1 2 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1703256 516 + . gene_id 5 ; sequence AfOr77 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702014 1702368 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702368 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1702369 1702370 . + . intron_id 1 ; splice_site "CT" KQ414915.1 exonerate:protein2genome:local intron 1702369 1702975 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702974 1702975 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1702976 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1702976 1703256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1703256 516 + . alignment_id 5 ; Query AfOr77 ; Align 1702014 185 141 ; Align 1702161 232 207 ; Align 1702978 302 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr77 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 236 Query range: 298 -> 405 Target range: 1689477 -> 1690091 299 : ProValArgArgArgLeuIlePheAlaPheHisLeuAlaAlaCysMetCysGlnLe : 317 |||..!! !! !|||||||||||| !||||||:!! !!.! !!.!. !!..:: ProThrThrThrArgLeuIlePheLeuPheHisMetIleGlySerPheIleHisIl 1689478 : CCTACCACGACGCGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCacat : 1689532 318 : uLeuMetPheThrTyrSerCysAspCysIleIleGlnGluSerSerSerIleAlaS : 336 ::::...|||||||||||||||! ! !!:!:|||:!!||||||! !..!||||||! eIlePhePheThrTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleAlaT 1689533 : aattttcttcacgtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCAA : 1689589 337 : erAlaValTyrAspGlyProTrpProPheLeuPheGluThrThrSerGlyArgThr : 354 !!|||..!|||! ||| !||| !! !!||| !!.!! ! !|||!:!! ! hrAlaThrTyrAlaGlyMetTrpThrValLeuProMetAsnLysValGlyLysMet 1689590 : CAGCAACGTATGCAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAATG : 1689643 355 : MetArgLysAspLeuThrLeuValIleLeuArgSerAlaValProCysCysLeuTh : 373 !!:||| !:!!:!!! !|||:!!! !:!!|||||| ! !|||||||||:!!|| IleArgGlyAsnMetLysLeuMetThrValArgSerLeuGlnProCysCysIleTh 1689644 : ATACGAGGAAATATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAAC : 1689700 374 : rAlaArgGlyPhePheValValSerLeuGluThrTyrThrArg >>>> Target : 388 |||| !!||||||||| !|||||||||:!!||| !||| ! 2 rAlaGlyGlyPhePheProValSerLeuLysThrAlaThrAla++ 1689701 : TGCTGGTGGATTCTTTCCTGTCTCCTTGAAAACTGCTACCGCGgt........... : 1689747 389 : Intron 1 >>>> ValLeuSerThrAlaValSerTyrPheThrLeuLeuArgG : 401 93 bp :!!:!!|||:!!.!!:!!|||||||||||||||:!!|||: ++LeuMetSerSerThrMetSerTyrPheThrLeuMetArgG 1689748 : ..............agCTAATGAGTTCCACAATGTCGTATTTCACGCTCATGAGAG : 1690077 402 : lnSerThrLeuGlu : 405 !!!!!:!! !||| luArgSerAlaGlu 1690078 : AGAGATCGGCTGAA : 1690091 vulgar: AfOr77 298 405 . KQ414915.1 1689477 1690091 + 236 M 89 267 5 0 2 I 0 289 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1689478 1690091 236 + . gene_id 6 ; sequence AfOr77 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1689478 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689478 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690091 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690091 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1689478 1690091 236 + . alignment_id 6 ; Query AfOr77 ; Align 1689478 299 267 ; Align 1690038 388 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr77 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 206 Query range: 149 -> 224 Target range: 1681719 -> 1682067 150 : ValGluAsnIleGlyLysAsnGluSerGluArgValLeuProPheAsnMetTrpVa : 168 ...|||||||||||||||!:!!!:..!||||||:!!||||||||| .!. ! || ThrGluAsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgVa 1681720 : acagaGAACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGT : 1681774 169 : l<->AsnLeuProLeuSerThrSerProTyrTyrGluIleValPheThrIleGln : 186 | ||||||||| !||| !!!!|||||||||||||||:::|||..!|||:!! lPheAsnLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu+ 1681775 : GTTTAACTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGg : 1681831 187 : >>>> Target Intron 1 >>>> AlaLeuSerLeuTyrHisValGlyIleG : 195 120 bp .!!||||||:!! ||| !|||||| + ++ThrLeuSerValValHisSerGlyIleC 1681832 : t.........................agACATTATCTGTGGTGCATTCGGGAATTT : 1681978 196 : lyTyrPheCysPheAspAsnLeuLeuCysValPheAsnLeuGlnLeuAlaGlyGln : 213 !!!:!! !||||||||||||!!!||||||:!!.!.!:!:!!!!.:!!!.!|||||| ysPheCysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGln 1681979 : GTTTCTGTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAG : 1682032 214 : PheGlnIleLeuGlnTyrLysMetAlaAsnIle : 224 |||:!!||||||||| !!|||:!: !!..:!! PheLysIleLeuGlnAsnLysLeuGlnThrVal 1682033 : TTTAAGATTTTACAAAACAAACTCCAAACAGTA : 1682067 vulgar: AfOr77 149 224 . KQ414915.1 1681719 1682067 + 206 M 19 57 G 0 3 M 17 51 5 0 2 I 0 116 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681720 1682067 206 + . gene_id 7 ; sequence AfOr77 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681720 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681720 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682067 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682067 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681720 1682067 206 + . alignment_id 7 ; Query AfOr77 ; Align 1681720 150 57 ; Align 1681780 169 51 ; Align 1681951 186 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr77 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 243 -> 389 Target range: 1677734 -> 1678746 244 : LysLysCysTyrAlaAlaPheLysAsnTyrValArgGluHisGlnAlaLeuIleAl : 262 |||:!! ! |||:::... :!!|||..!||| ! !||||||! LysGlnMetSerGlnLysPheGluLysCysLeuArgArgHisTyrLeuLeuIleAs 1677735 : AAGCAAATGTCGcagaaattcgagaaatgcTTGCGTCGACACTATTTGCTCATTGA : 1677789 263 : aPheCysGluLysLeuGluLysValPheSerLeuIleIleLeuTrpGlnValLeuM : 281 !!:! |||:::|||......:::|||!.!! !! !:!!|||! |||:!!:!!! pTyrValGluGluLeuAsnAsnLeuPheLysTyrThrLeuLeuLeuGlnMetMetT 1677790 : CTACGTAGAGgaattgaataatttgttCAAATACACCCTTCTGTTACAGATGATGA : 1677846 282 : etPheSerLeuIleIleCysLeuAspGlyTyrGlnIleLeuLeu >>>> Targe : 296 ! ||||||:!!||||||:!!..!||||||:!! !|||:!! hrSerSerLeuLeuIleCysMetSerGlyTyrGluCysLeuVal++ 1677847 : CCTCGAGTTTGTTAATCTGTATGTCTGGTTACGAATGTTTAGTGgt.......... : 1677893 297 : t Intron 1 >>>> ProGluSerProValArgArgArgLeuIlePheAlaPhe : 308 580 bp !:!!:!! !!:!!! !!:!|||:!!:!!!:! !.!. ++TyrGlnAlaSerLeuLeuLysArgMetValTyrIleMet 1677894 : ...............agTACCAGGCATCCTTGCTAAAACGCATGGTCTACATCATG : 1678507 309 : HisLeuAlaAlaCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIl : 327 :!!:!!!.!|||! :!!! :!!|||! !:!!.!...! !!! ||| :! TyrMetValAlaSerValSerGluLeuTrpLeuIleValArgThrValAspGluLe 1678508 : TACATGGTTGCCTCAGTGTCAGAATTATGGTTGATAGTCCGAACCGTAGACGAACT : 1678564 328 : eIleGlnGluSerSerSerIleAlaSerAlaValTyrAspGlyProTrpProPheL : 346 :! ! .!.|||!.!:!!|||!.!..!|||:!!|||..!..! !||| ! ! : uThrThrHisSerLysAlaIleGlyAspAlaMetTyrSerSerAspTrpGlyValI 1678565 : GACCACTCATAGCAAAGCGATCGGCGATGCGATGTATTCCTCGGATTGGGGAGTga : 1678621 347 : euPheGluThrThrSerGlyArgThrMetArgLysAspLeuThrLeuValIleLeu : 364 ::||| ... ::: :::::: |||||| !:!!:!!:!! lePheGlyLysLeuGlu---LysLysLeuLysPheAlaLeuThrThrMetValIle 1678622 : tctttggaaaattggag---aagaaattaaaatttgcctTGACGACGATGGTTATC : 1678672 365 : ArgSerAlaValProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGl : 383 |||||| !! ! !!|||! !:!!! !||| |||||||||!.!|||||| !|| ArgSerIleGluThrCysSerMetLysAla---GlyPhePheAlaValSerSerGl 1678673 : AGATCGATCGAGACGTGTTCTATGAAAGCT---GGCTTCTTTGCGGTCTCCAGTGA : 1678726 384 : uThrTyrThrArgValLeu : 389 ||||!:!||| !|||:!! uThrPheThrSerValIle 1678727 : GACGTTTACATCGGTAATT : 1678746 vulgar: AfOr77 243 389 . KQ414915.1 1677734 1678746 + 166 M 52 156 5 0 2 I 0 576 3 0 2 M 56 168 G 1 0 M 22 66 G 1 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1677735 1678746 166 + . gene_id 8 ; sequence AfOr77 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1677735 1677890 . + . KQ414915.1 exonerate:protein2genome:local exon 1677735 1677890 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1677891 1677892 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1677891 1678470 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1678469 1678470 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1678471 1678746 . + . KQ414915.1 exonerate:protein2genome:local exon 1678471 1678746 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local similarity 1677735 1678746 166 + . alignment_id 8 ; Query AfOr77 ; Align 1677735 244 156 ; Align 1678471 296 168 ; Align 1678639 353 66 ; Align 1678705 376 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr77 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 0 -> 63 Target range: 1692073 -> 1692262 1 : MetGlyPheLeuAsnThrAspAspIleSerMetIleMetThrAlaThrPheMetLy : 19 ||| !!!.:!!.!.!:! ! |||||||||!!::!! !:!! ! !!!.||||| MetHisLeuValGlnSerLysAspIleSerIleValTrpSerPhePheLeuMetLy 1692074 : ATGCATTTAGTGCAGAGTAAAGATATCTCGATCGTTTGGTCGTTCTTTTTGATGAA : 1692128 20 : sLeuValGlyLeuTrpThrAlaLysAspArgHisGluGlnArgAlaArgLysPheA : 38 |:!!|||||||||||| !||| |||..! !||||||||| !|||!!.|||| sIleValGlyLeuTrpLeuAlaAlaAspGluAlaGluGlnArgArgArgAsnPheA 1692129 : AATCGTAGGTCTGTGGCTAGCCGCCGACGAGGCTGAACAACGTCGGAGAAATTTCG : 1692185 39 : laLeuIleTyrThrLeuAlaThrIleLeuPheAlaLeuTrpIleGluPheThrAsp : 56 ||||||||||||||||| !.!!|||!!!.!!|||! !!! |||! !.!.! !||| laLeuIleTyrThrLeuAsnAlaIlePheIleAlaSerCysIleAlaMetArgAsp 1692186 : CGCTGATTTACACGCTGAACGCGATTTTTATCGCTTCGTGTATAGCAATGAGAGAT : 1692239 57 : PheTyrTyrSerPheGlyAsp : 63 .!.|||||||||!::|||:!! IleTyrTyrSerTrpGlyAsn 1692240 : ATATACTATTCCTGGGGAAAC : 1692262 vulgar: AfOr77 0 63 . KQ414915.1 1692073 1692262 + 150 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1692074 1692262 150 + . gene_id 9 ; sequence AfOr77 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1692074 1692262 . + . KQ414915.1 exonerate:protein2genome:local exon 1692074 1692262 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1692074 1692262 150 + . alignment_id 9 ; Query AfOr77 ; Align 1692074 1 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr77 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 0 -> 65 Target range: 1710200 -> 1710395 1 : MetGlyPheLeuAsnThrAspAspIleSerMetIleMetThrAlaThrPheMetLy : 19 ||| !!!.!!!!!.|||||||||:!!.!!.!.! !:!!|||:!!! !|||:!!|| MetLysLeuPheLysThrAspAspLeuGlyPheSerValThrSerMetPheValLy 1710201 : ATGAAATTGTTCAAGACTGACGACTTAGGTTTCAGCGTGACTTCGATGTTCGTGAA : 1710255 20 : sLeuValGlyLeuTrpThrAlaLysAspArgHisGluGlnArgAlaArgLysPheA : 38 |:!!:!!|||||||||! !||||||:!!!:! !||||||!.!!.!|||!!. ! . sMetIleGlyLeuTrpMetAlaLysAsnGlnPheGluGlnHisValArgAsnValT 1710256 : AATGATCGGATTGTGGATGGCGAAAAATCAGTTCGAGCAACATGTCAGAAACGTGA : 1710312 39 : laLeuIleTyrThrLeuAlaThrIleLeuPheAlaLeuTrpIleGluPheThrAsp : 56 !!|||.!!||||||... ::: |||!.!!!!!:::!:||| !|||:!! hrLeuPheTyrThrPhePhePheValSerPheGlyPheTyrValGluAlaThrAsn 1710313 : CGTTGTTCTACacattcttcttcgtttccttcGGATTCTACGTGGAAGCTACGAAC : 1710366 57 : PheTyrTyrSerPheGlyAspPheSer : 65 .!.|||:!!|||!::||||||.!!||| LeuTyrHisSerTrpGlyAspLeuSer 1710367 : CTGTACCACTCGTGGGGCGATCTCAGC : 1710395 vulgar: AfOr77 0 65 . KQ414915.1 1710200 1710395 + 150 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1710201 1710395 150 + . gene_id 10 ; sequence AfOr77 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1710201 1710395 . + . KQ414915.1 exonerate:protein2genome:local exon 1710201 1710395 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1710201 1710395 150 + . alignment_id 10 ; Query AfOr77 ; Align 1710201 1 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr77 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 151 -> 185 Target range: 1688056 -> 1688158 152 : AsnIleGlyLysAsnGluSerGluArgValLeuProPheAsnMetTrpValAsnLe : 170 |||!!:.!!::!|||:!!|||!!:|||||||||||||||!!.|||||||||:!!! AsnMetSerArgAsnLysSerAspArgValLeuProPheLysMetTrpValAspTr 1688057 : AATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTGGGTCGATTG : 1688111 171 : uProLeuSerThrSerProTyrTyrGluIleValPheThrIleGln : 185 !||||||||| !!!!||||||||||||:!::!!||||||.!!||| pProLeuSerAspThrProTyrTyrGluLeuMetPheThrPheGln 1688112 : GCCGCTATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAG : 1688158 vulgar: AfOr77 151 185 . KQ414915.1 1688056 1688158 + 127 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688057 1688158 127 + . gene_id 11 ; sequence AfOr77 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1688057 1688158 . + . KQ414915.1 exonerate:protein2genome:local exon 1688057 1688158 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688057 1688158 127 + . alignment_id 11 ; Query AfOr77 ; Align 1688057 152 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr97P Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 150 -> 233 Target range: 32500 -> 32749 151 : AlaLeuLeuLeuPheLeuLeuLeuProLeuPheProSerPheLeuAspValValPhePro : 170 !.!:!!!!!! !!:! !:!!:!!! !!!!.!.|||! !.!!:!!||||||:!! ||| GlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaPro 32501 : GGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCT : 32558 171 : LeuAsnGluThrArgGlnGlnLeuGlnIlePheLysMetLysTyrPheIleLysGluAsp : 190 |||||||||:!!|||!!.!!.:!!! ! !:! :!!||||||:!! ! :::... LeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGln 32559 : CTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaa : 32618 191 : GlnTyrPheTyrProIleTyrPheHisSerValTrpSerSerPheValIleIleMetIle : 210 :::|||||| |||||| !!.|||! !:!! !!!!! ! !:!! !:!:! !:!! LysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrVal 32619 : aaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTC : 32678 211 : ThrValThrIleAspSerLeuTyrMetLeuIleIleHisHisAlaSerGlyLeuPheAla : 230 .!!..!.!!:::||||||:::::::::......::: !|||!.!!!!!.! !||| ! AlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsn 32679 : GCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAAT : 32738 231 : IleCysGly : 233 ||| !||| IleLeuGly 32739 : ATTCTCGGG : 32749 vulgar: AfOr97P 150 233 . KQ415081.1 32500 32749 + 126 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32501 32749 126 + . gene_id 1 ; sequence AfOr97P ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32501 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32501 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32501 32749 126 + . alignment_id 1 ; Query AfOr97P ; Align 32501 151 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr97P Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 153 -> 233 Target range: 5002 -> 5242 154 : LeuPheLeuLeuLeuProLeuPheProSerPheLeuAspValValPheProLeuAsnGluTh : 174 ||||||:!!! !||||||!!! ! !! !!.!!||||||:!!:!!.!.|||||||||||||| LeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluTh 5003 : CTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGAC : 5063 175 : rArgGlnGlnLeuGlnIlePheLysMetLysTyrPheIleLysGluAspGlnTyrPheTyrP : 195 |||| !!:!||| :!!!:! ! ! ||||||:!! ! ||||||:!!||| !||| rArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrL 5064 : GCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACT : 5126 196 : roIleTyrPheHisSerValTrpSerSerPheValIleIleMetIleThrValThrIleAsp : 215 !||| |||! ! ! ! ! ! :!!:!!||| :!! ! !.!! !||| euIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAsp 5127 : TGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGAT : 5186 216 : SerLeuTyrMetLeuIleIleHisHisAlaSerGlyLeuPheAlaIleCysGly : 233 :!! !|||:!!! ! !:!:!!.||||||!!!||||||!!.||||||...||| AlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5187 : GCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5242 vulgar: AfOr97P 153 233 . LHQN01025741.1 5002 5242 + 157 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5003 5242 157 + . gene_id 1 ; sequence AfOr97P ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5003 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5003 5242 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5003 5242 157 + . alignment_id 1 ; Query AfOr97P ; Align 5003 154 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr100 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 140 -> 239 Target range: 4984 -> 5278 141 : LeuLeuValAlaMetValIlePhePheSerValProLeuIlePheProIleLeuAspIleVa : 161 :!!! !:!!..! !.!:!!|||.!.!!!:!!|||!!!:!:! |||||||||||||||:! IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLe 4985 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCT : 5045 162 : lTyrProLeuAsnGluThrArgProArgGlnGlnLeuTyrLysValAsnTyrLeuIlePheA : 182 ! |||||||||||||||||| !!||| ! :!!||| !!.! !!|||!!!:!! : uMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal---A 5046 : TATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC---G : 5105 183 : snHisGluAspTyrTyrPheTyrValTyrPheGlnLeuValTrpSerSerPheValCysVal : 202 !!.!.!!: ! |||:!!!:!! :!! !!.:!! ! ! ! ! :!! !:!! spGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIle 5106 : ACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATC : 5165 203 : IleIleIleIleIlePheAspTrpLeuTyrIleLeuIleIleHisHisAsnSerGlyMetPh : 223 !:!!.!! ! !! !||| !|||:!:! ! !:!:!!.||| !!!!|||:!!!! SerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLe 5166 : TCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTT : 5228 224 : eThrValCysGlyTyrGlnIleGlnLysIlePheThrGluGluAlaPhe : 239 ..!!:!!...|||!! !:!!||| ! !!!.! !|||.!.!.!||| uAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGluAsnGlyPhe 5229 : GGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAATGGTTTT : 5278 vulgar: AfOr100 140 239 . LHQN01025741.1 4984 5278 + 115 M 40 120 G 1 0 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4985 5278 115 + . gene_id 1 ; sequence AfOr100 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4985 5278 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4985 5278 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 4985 5278 115 + . alignment_id 1 ; Query AfOr100 ; Align 4985 141 120 ; Align 5105 182 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr97P Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 155 Query range: 153 -> 233 Target range: 5660 -> 5420 154 : LeuPheLeuLeuLeuProLeuPheProSerPheLeuAspValValPheProLeuAsnGluTh : 174 ||||||:!!! !||||||!!! ! !! !!.!!||||||:!!:!!.!.|||||||||||||| LeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluTh 5660 : CTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGAC : 5600 175 : rArgGlnGlnLeuGlnIlePheLysMetLysTyrPheIleLysGluAspGlnTyrPheTyrP : 195 |||| !!:!||| :!!!:! ! ! ||||||:!! ! ||||||:!!||| !||| rArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrL 5599 : GCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACT : 5537 196 : roIleTyrPheHisSerValTrpSerSerPheValIleIleMetIleThrValThrIleAsp : 215 !||| |||! ! ! ! ! ! :!!:!!||| :!! ! !.!! !||| euIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAsp 5536 : TGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGAT : 5477 216 : SerLeuTyrMetLeuIleIleHisHisAlaSerGlyLeuPheAlaIleCysGly : 233 :!! !|||:!!! ! !:!:!!.||||||!!!||||||!!.||||||...||| AlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5476 : GCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5421 vulgar: AfOr97P 153 233 . LHQN01028732.1 5660 5420 - 155 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5660 155 - . gene_id 1 ; sequence AfOr97P ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5660 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5660 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5660 155 - . alignment_id 1 ; Query AfOr97P ; Align 5661 154 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr100 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 140 -> 239 Target range: 5678 -> 5384 141 : LeuLeuValAlaMetValIlePhePheSerValProLeuIlePheProIleLeuAspIleVa : 161 :!!! !:!!..! !.!:!!|||.!.!!!:!!|||!!!:!:! |||||||||||||||:! IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLe 5678 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCT : 5618 162 : lTyrProLeuAsnGluThrArgProArgGlnGlnLeuTyrLysValAsnTyrLeuIlePheA : 182 ! |||||||||||||||||| !!||| ! :!!||| !!.! !!|||!!!:!! : uMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal---A 5617 : TATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC---G : 5558 183 : snHisGluAspTyrTyrPheTyrValTyrPheGlnLeuValTrpSerSerPheValCysVal : 202 !!.!.!!: ! ||| !!:!! :!! !!.:!! ! ! ! ! :!! !:!! spGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIle 5557 : ACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATC : 5498 203 : IleIleIleIleIlePheAspTrpLeuTyrIleLeuIleIleHisHisAsnSerGlyMetPh : 223 !:!!.!! ! !! !||| !|||:!:! ! !:!:!!.||| !!!!|||:!!!! SerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLe 5497 : TCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTT : 5435 224 : eThrValCysGlyTyrGlnIleGlnLysIlePheThrGluGluAlaPhe : 239 ..!!:!!...|||!! !:!!||| ! !!!.! !|||.!.!.!||| uAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGluAsnGlyPhe 5434 : GGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAATGGTTTT : 5385 vulgar: AfOr100 140 239 . LHQN01028732.1 5678 5384 - 111 M 40 120 G 1 0 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5385 5678 111 - . gene_id 1 ; sequence AfOr100 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5385 5678 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5385 5678 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5385 5678 111 - . alignment_id 1 ; Query AfOr100 ; Align 5679 141 120 ; Align 5559 182 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: LHQN01036086.1 Habropoda laboriosa contig36086, whole genome shotgun sequence Model: protein2genome:local Raw score: 223 Query range: 87 -> 151 Target range: 0 -> 192 88 : TyrAlaHisLysMetGluPhePheAsnLeuValThrPheThrArgLysAsnPheTrpArgProT : 109 ||| !|||!:!!!:||||||!:!...|||:!!! !||||||!:!:!!!!.||||||!.! ! TyrLysHisArgIleGluPheTyrGlyLeuIleArgPheThrGlnGluLysPheTrpHisPheA 1 : TACAAGCACAGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAGAGAAATTCTGGCATTTCA : 64 110 : yrArgAspProGluGluLysLeuIleLeuAlaGluCysLysArgIleCysThrIlePheValVa : 130 !! !:!! !!..!|||||||||||||||:!!|||||||||!:!|||||||||:!!|||:!!|| snTyrAsnSerArgGluLysLeuIleLeuSerGluCysLysLysIleCysThrValPheIleVa 65 : ACTATAATTCACGGGAGAAGTTAATTTTATCCGAGTGCAAGAAGATATGTACCGTTTTCATCGT : 127 131 : lValIleSerPheCysAlaGlnGlyThrCysThrGlyTyrMetValThrProIleIleAlaAsn : 151 |!.!.!!|||||||||.!!||||||||||||.!!||||||:!:||||||||||||:!!...||| lAlaPheSerPheCysThrGlnGlyThrCysAlaGlyTyrValValThrProIleLeuGlyAsn 128 : TGCCTTCAGCTTCTGTACACAGGGCACGTGTGCTGGTTACGTAGTGACACCTATTTTAggtaat : 190 vulgar: AfOr84 87 151 . LHQN01036086.1 0 192 + 223 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01036086.1 exonerate:protein2genome:local gene 1 192 223 + . gene_id 1 ; sequence AfOr84 ; gene_orientation . LHQN01036086.1 exonerate:protein2genome:local cds 1 192 . + . LHQN01036086.1 exonerate:protein2genome:local exon 1 192 . + . insertions 0 ; deletions 0 LHQN01036086.1 exonerate:protein2genome:local similarity 1 192 223 + . alignment_id 1 ; Query AfOr84 ; Align 1 88 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: LHQN01036086.1 Habropoda laboriosa contig36086, whole genome shotgun sequence Model: protein2genome:local Raw score: 201 Query range: 87 -> 151 Target range: 0 -> 192 88 : TyrThrHisLysValGluPhePheAsnLeuIleThrPheThrGlnArgAsnPheTrpArgPheT : 109 |||! !|||!:!:!!||||||!:!...||||||! !|||||||||..!!!.||||||!.!||| TyrLysHisArgIleGluPheTyrGlyLeuIleArgPheThrGlnGluLysPheTrpHisPheA 1 : TACAAGCACAGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAGAGAAATTCTGGCATTTCA : 64 110 : yrAsnAspProGlnGluValLeuIleIleAlaGlyCysLysArgIleCysAsnPheSerIleVa : 130 !! !!:!! !!!:!||| !||||||:!!:!!! !||||||!:!||||||!.! !!! !||||| snTyrAsnSerArgGluLysLeuIleLeuSerGluCysLysLysIleCysThrValPheIleVa 65 : ACTATAATTCACGGGAGAAGTTAATTTTATCCGAGTGCAAGAAGATATGTACCGTTTTCATCGT : 127 131 : lLeuIleValPheCysAlaGlnGlyThrCysAlaGlyTyrMetValThrProLeuIleGluAsn : 151 | !.!! !||||||.!!|||||||||||||||||||||:!:|||||||||:!!:!! ||| lAlaPheSerPheCysThrGlnGlyThrCysAlaGlyTyrValValThrProIleLeuGlyAsn 128 : TGCCTTCAGCTTCTGTACACAGGGCACGTGTGCTGGTTACGTAGTGACACCTATTTTAggtaat : 190 vulgar: AfOr75P 87 151 . LHQN01036086.1 0 192 + 201 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01036086.1 exonerate:protein2genome:local gene 1 192 201 + . gene_id 1 ; sequence AfOr75P ; gene_orientation . LHQN01036086.1 exonerate:protein2genome:local cds 1 192 . + . LHQN01036086.1 exonerate:protein2genome:local exon 1 192 . + . insertions 0 ; deletions 0 LHQN01036086.1 exonerate:protein2genome:local similarity 1 192 201 + . alignment_id 1 ; Query AfOr75P ; Align 1 88 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: LHQN01036086.1 Habropoda laboriosa contig36086, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 104 -> 168 Target range: 0 -> 192 105 : PheValHisArgLysGluPheIleAspLeuLeuValTyrThrHisGluHisPheTrpHisThrA : 126 !:! !||||||! !|||||| !! |||:!! !!:!|||!!.||| ! ||||||||| !| TyrLysHisArgIleGluPheTyrGlyLeuIleArgPheThrGlnGluLysPheTrpHisPheA 1 : TACAAGCACAGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAGAGAAATTCTGGCATTTCA : 64 127 : snTyrThrTyrAsnGluLeuLeuLeuValGluLysCysLysArgIleCysMetLeuCysIleTh : 147 |||||!.!! ...||| !|||:!!:!!...:!!||||||!:!||||||! :!!! !|||.. snTyrAsnSerArgGluLysLeuIleLeuSerGluCysLysLysIleCysThrValPheIleVa 65 : ACTATAATTCACGGGAGAAGTTAATTTTATCCGAGTGCAAGAAGATATGTACCGTTTTCATCGT : 127 148 : rLeuIleAsnValCysAlaGlnGlyThrIleValSerTyrValLeuThrProIleValGluAsn : 168 ! !.!!!:! !!|||.!!||||||||| !!.!.!!||||||:!!|||||||||:!! ||| lAlaPheSerPheCysThrGlnGlyThrCysAlaGlyTyrValValThrProIleLeuGlyAsn 128 : TGCCTTCAGCTTCTGTACACAGGGCACGTGTGCTGGTTACGTAGTGACACCTATTTTAggtaat : 190 vulgar: AfOr87 104 168 . LHQN01036086.1 0 192 + 167 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01036086.1 exonerate:protein2genome:local gene 1 192 167 + . gene_id 1 ; sequence AfOr87 ; gene_orientation . LHQN01036086.1 exonerate:protein2genome:local cds 1 192 . + . LHQN01036086.1 exonerate:protein2genome:local exon 1 192 . + . insertions 0 ; deletions 0 LHQN01036086.1 exonerate:protein2genome:local similarity 1 192 167 + . alignment_id 1 ; Query AfOr87 ; Align 1 105 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: LHQN01040768.1 Habropoda laboriosa contig40768, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 292 -> 343 Target range: 75 -> 228 293 : AspLeuThrThrSerTyrArgValSerPheIleSerTyrLeuPheAlaGlyMetCysGlnLeuT : 314 !!:|||:!! !..!!::||||||:!!!!. !!!!:!! !.!..!!|||:!! !!||||||| GluLeuSerPheGluTrpArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuT 76 : GAGTTATCATTTGAATGGCGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTAT : 139 315 : rpMetPheThrTyrSerCysAspCysIleThrGlnGluSerAlaGluIleAlaSerAlaAlaTy : 335 |||||||||||||||||||||||||||||||| !|||||| !.!.||||||..!:!!!.!|| rpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTy 140 : GGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATA : 202 336 : rThrSerProTrpIleAspLeuPro : 343 |.!!.!!|||||||||:!!|||||| rAlaGlyProTrpIleAsnLeuPro 203 : CGCTGGACCATGGATAAATTTACCA : 228 vulgar: AfOr96 292 343 . LHQN01040768.1 75 228 + 159 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01040768.1 exonerate:protein2genome:local gene 76 228 159 + . gene_id 1 ; sequence AfOr96 ; gene_orientation . LHQN01040768.1 exonerate:protein2genome:local cds 76 228 . + . LHQN01040768.1 exonerate:protein2genome:local exon 76 228 . + . insertions 0 ; deletions 0 LHQN01040768.1 exonerate:protein2genome:local similarity 76 228 159 + . alignment_id 1 ; Query AfOr96 ; Align 76 293 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr94 Target: LHQN01040768.1 Habropoda laboriosa contig40768, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 294 -> 345 Target range: 75 -> 228 295 : AsnLeuThrPheSerTrpArgIleSerPheLeuCysPheLeuIleThrAsnMetCysGlnLeuT : 316 .!.|||:!!|||..!||||||:!!:!!!!. !||||||! !!!:|||..!:!! !!||||||| GluLeuSerPheGluTrpArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuT 76 : GAGTTATCATTTGAATGGCGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTAT : 139 317 : rpMetPheThrTyrSerCysAspCysMetThrArgGluSerValAsnValAlaSerAlaValTy : 337 ||||||||||||||||||||||||||!!:|||! !||||||:!!|||:!!|||..!:!!||||| rpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTy 140 : GGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATA : 202 338 : rSerIleProTrpThrArgIlePro : 345 |:!! !||||||! !!.!:!!||| rAlaGlyProTrpIleAsnLeuPro 203 : CGCTGGACCATGGATAAATTTACCA : 228 vulgar: AfOr94 294 345 . LHQN01040768.1 75 228 + 183 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01040768.1 exonerate:protein2genome:local gene 76 228 183 + . gene_id 1 ; sequence AfOr94 ; gene_orientation . LHQN01040768.1 exonerate:protein2genome:local cds 76 228 . + . LHQN01040768.1 exonerate:protein2genome:local exon 76 228 . + . insertions 0 ; deletions 0 LHQN01040768.1 exonerate:protein2genome:local similarity 76 228 183 + . alignment_id 1 ; Query AfOr94 ; Align 76 295 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr95 Target: LHQN01040768.1 Habropoda laboriosa contig40768, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 312 -> 346 Target range: 126 -> 228 313 : LeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSerSerSerIleA : 334 :!! !!||||||! !|||||||||||||||||||||||||||! !! !|||||| !!:!|||| ValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleA 127 : GTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCG : 190 335 : laThrAlaAlaAsnArgGlyProTrpProMetIlePro : 346 || !:!!!.! !! !||||||||| !! :!!||| laGluSerValTyrAlaGlyProTrpIleAsnLeuPro 191 : CTGAATCTGTATACGCTGGACCATGGATAAATTTACCA : 228 vulgar: AfOr95 312 346 . LHQN01040768.1 126 228 + 101 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01040768.1 exonerate:protein2genome:local gene 127 228 101 + . gene_id 1 ; sequence AfOr95 ; gene_orientation . LHQN01040768.1 exonerate:protein2genome:local cds 127 228 . + . LHQN01040768.1 exonerate:protein2genome:local exon 127 228 . + . insertions 0 ; deletions 0 LHQN01040768.1 exonerate:protein2genome:local similarity 127 228 101 + . alignment_id 1 ; Query AfOr95 ; Align 127 313 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: LHQN01040768.1 Habropoda laboriosa contig40768, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 293 -> 338 Target range: 93 -> 228 294 : LysValSerLeuValLeuAsnPheAlaGlyThrLeuCysGlnLeuLeuMetPheThrTyrSerC : 315 :::|||:!!|||!.!! ! !! ! ! !:!! !!||||||! !|||||||||||||||| ArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerC 94 : CGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTT : 157 316 : ysAspAspLeuIleGlnGluSerValLysValGlyAsnAlaIlePheSerGlyProTrpAlaSe : 336 ||||| !:!!! ! !||||||:!!!!.:!!!.!.!.:!!:!!!:!:!!||||||||| !!: ysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAs 158 : GCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAA : 220 337 : rLeuPro : 338 !|||||| nLeuPro 221 : TTTACCA : 228 vulgar: AfOr84 293 338 . LHQN01040768.1 93 228 + 102 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01040768.1 exonerate:protein2genome:local gene 94 228 102 + . gene_id 1 ; sequence AfOr84 ; gene_orientation . LHQN01040768.1 exonerate:protein2genome:local cds 94 228 . + . LHQN01040768.1 exonerate:protein2genome:local exon 94 228 . + . insertions 0 ; deletions 0 LHQN01040768.1 exonerate:protein2genome:local similarity 94 228 102 + . alignment_id 1 ; Query AfOr84 ; Align 94 294 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr77 Target: LHQN01040768.1 Habropoda laboriosa contig40768, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 302 -> 343 Target range: 93 -> 216 303 : ArgLeuIlePheAlaPheHisLeuAlaAlaCysMetCysGlnLeuLeuMetPheThrTyrSerC : 324 |||:!! !!!.|||! ! !! ! !.!! !!:!! !!||||||! !|||||||||||||||| ArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerC 94 : CGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTT : 157 325 : ysAspCysIleIleGlnGluSerSerSerIleAlaSerAlaValTyrAspGlyProTrp : 343 |||||||||||! ! !|||||| !!:!||||||..!:!!||||||! !||||||||| ysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrp 158 : GCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGG : 216 vulgar: AfOr77 302 343 . LHQN01040768.1 93 216 + 110 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01040768.1 exonerate:protein2genome:local gene 94 216 110 + . gene_id 1 ; sequence AfOr77 ; gene_orientation . LHQN01040768.1 exonerate:protein2genome:local cds 94 216 . + . LHQN01040768.1 exonerate:protein2genome:local exon 94 216 . + . insertions 0 ; deletions 0 LHQN01040768.1 exonerate:protein2genome:local similarity 94 216 110 + . alignment_id 1 ; Query AfOr77 ; Align 94 303 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: LHQN01040768.1 Habropoda laboriosa contig40768, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 319 -> 349 Target range: 126 -> 216 320 : LeuCysGlnLeuLeuMetPheSerTyrSerCysAspCysIleIleArgLysSerValAsnValA : 341 :!! !!||||||! !||||||!!!||||||||||||||||||! !! !:!!|||:!!|||:!!| ValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleA 127 : GTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCG : 190 342 : laThrAlaAlaTyrGlyGlyProTrp : 349 || !:!!!.!|||!.!||||||||| laGluSerValTyrAlaGlyProTrp 191 : CTGAATCTGTATACGCTGGACCATGG : 216 vulgar: AfOr91_2 319 349 . LHQN01040768.1 126 216 + 106 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01040768.1 exonerate:protein2genome:local gene 127 216 106 + . gene_id 1 ; sequence AfOr91_2 ; gene_orientation . LHQN01040768.1 exonerate:protein2genome:local cds 127 216 . + . LHQN01040768.1 exonerate:protein2genome:local exon 127 216 . + . insertions 0 ; deletions 0 LHQN01040768.1 exonerate:protein2genome:local similarity 127 216 106 + . alignment_id 1 ; Query AfOr91_2 ; Align 127 320 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_1 Target: LHQN01040768.1 Habropoda laboriosa contig40768, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 305 -> 350 Target range: 93 -> 228 306 : ArgLeuIlePheSerLeuHisValLeuAlaCysLeuCysGlnLeuLeuMetPheSerTyrSerC : 327 |||:!! !!!.:!!! ! ! !:!!.!! !!:!! !!||||||! !||||||!!!||||||| ArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerC 94 : CGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTT : 157 328 : ysAspCysIleIleArgGluSerValAsnValAlaThrAlaAlaTyrGlyGlyProTrpThrLe : 348 |||||||||||! !! !||||||:!!|||:!!||| !:!!!.!|||!.!|||||||||! ! ysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAs 158 : GCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAA : 220 349 : uLeuPro : 350 !|||||| nLeuPro 221 : TTTACCA : 228 vulgar: AfOr91_1 305 350 . LHQN01040768.1 93 228 + 118 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01040768.1 exonerate:protein2genome:local gene 94 228 118 + . gene_id 1 ; sequence AfOr91_1 ; gene_orientation . LHQN01040768.1 exonerate:protein2genome:local cds 94 228 . + . LHQN01040768.1 exonerate:protein2genome:local exon 94 228 . + . insertions 0 ; deletions 0 LHQN01040768.1 exonerate:protein2genome:local similarity 94 228 118 + . alignment_id 1 ; Query AfOr91_1 ; Align 94 306 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: LHQN01040768.1 Habropoda laboriosa contig40768, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 334 -> 369 Target range: 123 -> 228 335 : SerLeuCysGlnLeuLeuLeuPheThrTyrSerCysAspSerLeuIleGlnGluSerThrAsnV : 356 .!!:!! !!||||||! !:!!||||||||||||||||||!!!:!!! ! !|||||| !|||: GlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnI 124 : GGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACA : 187 357 : alGlySerAlaValTyrSerGlyProTrpIleCysLeuPro : 369 !!!.!..!:!!||||||:!!|||||||||||| !|||||| leAlaGluSerValTyrAlaGlyProTrpIleAsnLeuPro 188 : TCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCA : 228 vulgar: AfOr87 334 369 . LHQN01040768.1 123 228 + 111 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01040768.1 exonerate:protein2genome:local gene 124 228 111 + . gene_id 1 ; sequence AfOr87 ; gene_orientation . LHQN01040768.1 exonerate:protein2genome:local cds 124 228 . + . LHQN01040768.1 exonerate:protein2genome:local exon 124 228 . + . insertions 0 ; deletions 0 LHQN01040768.1 exonerate:protein2genome:local similarity 124 228 111 + . alignment_id 1 ; Query AfOr87 ; Align 124 335 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: LHQN01040768.1 Habropoda laboriosa contig40768, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 308 -> 340 Target range: 132 -> 228 309 : GlnLeuLeuIlePheThrTyrSerCysAspAsnLeuIleArgGlnSerValAsnValGlyAsnA : 330 ||||||! !!!:|||||||||||||||||| !:!!! !! !:!!|||:!!|||:!!!.!.!.: GlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluS 133 : CAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAAT : 196 331 : laValPheSerGlyProTrpValAsnLeuPro : 340 !!|||!:!:!!|||||||||:!!||||||||| erValTyrAlaGlyProTrpIleAsnLeuPro 197 : CTGTATACGCTGGACCATGGATAAATTTACCA : 228 vulgar: AfOr75P 308 340 . LHQN01040768.1 132 228 + 111 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01040768.1 exonerate:protein2genome:local gene 133 228 111 + . gene_id 1 ; sequence AfOr75P ; gene_orientation . LHQN01040768.1 exonerate:protein2genome:local cds 133 228 . + . LHQN01040768.1 exonerate:protein2genome:local exon 133 228 . + . insertions 0 ; deletions 0 LHQN01040768.1 exonerate:protein2genome:local similarity 133 228 111 + . alignment_id 1 ; Query AfOr75P ; Align 133 309 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: LHQN01044749.1 Habropoda laboriosa contig44749, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 161 Query range: 293 -> 343 Target range: 151 -> 1 294 : LeuThrThrSerTyrArgValSerPheIleSerTyrLeuPheAlaGlyMetCysGlnLeuTrpM : 315 |||:!! !..!!::||||||:!!!!. !!!!:!|||.!..!!|||:!! !!|||||||||| LeuSerPheGluTrpArgValAlaLeuAlaCysPheLeuMetThrGlyValSerGlnLeuTrpM 151 : TTATCATTTGAATGGCGCGTTGCTTTGGCGTGCTTCTTGATGACGGGCGTGAGTCAACTATGGA : 88 316 : etPheThrTyrSerCysAspCysIleThrGlnGluSerAlaGluIleAlaSerAlaAlaTyrTh : 336 |||||||||||||||||||||||:!!||| !|||||| !.!.||||||..!:!!!.!|||.! etPheThrTyrSerCysAspCysLeuThrThrGluSerLeuAsnIleAlaGluSerValTyrAl 87 : TGTTCACGTATAGTTGCGATTGCCTAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGC : 25 337 : rSerProTrpIleAspLeuPro : 343 !.!!|||||||||:!!|||||| aGlyProTrpIleAsnLeuPro 24 : TGGACCATGGATAAATTTACCA : 2 vulgar: AfOr96 293 343 . LHQN01044749.1 151 1 - 161 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01044749.1 exonerate:protein2genome:local gene 2 151 161 - . gene_id 1 ; sequence AfOr96 ; gene_orientation . LHQN01044749.1 exonerate:protein2genome:local cds 2 151 . - . LHQN01044749.1 exonerate:protein2genome:local exon 2 151 . - . insertions 0 ; deletions 0 LHQN01044749.1 exonerate:protein2genome:local similarity 2 151 161 - . alignment_id 1 ; Query AfOr96 ; Align 152 294 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr94 Target: LHQN01044749.1 Habropoda laboriosa contig44749, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 190 Query range: 294 -> 345 Target range: 154 -> 1 295 : AsnLeuThrPheSerTrpArgIleSerPheLeuCysPheLeuIleThrAsnMetCysGlnLeuT : 316 !!.|||:!!|||..!||||||:!!:!!!!. !|||||||||!!:|||..!:!! !!||||||| LysLeuSerPheGluTrpArgValAlaLeuAlaCysPheLeuMetThrGlyValSerGlnLeuT 154 : AAGTTATCATTTGAATGGCGCGTTGCTTTGGCGTGCTTCTTGATGACGGGCGTGAGTCAACTAT : 91 317 : rpMetPheThrTyrSerCysAspCysMetThrArgGluSerValAsnValAlaSerAlaValTy : 337 ||||||||||||||||||||||||||:!:|||! !||||||:!!|||:!!|||..!:!!||||| rpMetPheThrTyrSerCysAspCysLeuThrThrGluSerLeuAsnIleAlaGluSerValTy 90 : GGATGTTCACGTATAGTTGCGATTGCCTAACAACAGAAAGCCTGAACATCGCTGAATCTGTATA : 28 338 : rSerIleProTrpThrArgIlePro : 345 |:!! !||||||! !!.!:!!||| rAlaGlyProTrpIleAsnLeuPro 27 : CGCTGGACCATGGATAAATTTACCA : 2 vulgar: AfOr94 294 345 . LHQN01044749.1 154 1 - 190 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01044749.1 exonerate:protein2genome:local gene 2 154 190 - . gene_id 1 ; sequence AfOr94 ; gene_orientation . LHQN01044749.1 exonerate:protein2genome:local cds 2 154 . - . LHQN01044749.1 exonerate:protein2genome:local exon 2 154 . - . insertions 0 ; deletions 0 LHQN01044749.1 exonerate:protein2genome:local similarity 2 154 190 - . alignment_id 1 ; Query AfOr94 ; Align 155 295 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr95 Target: LHQN01044749.1 Habropoda laboriosa contig44749, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 301 -> 346 Target range: 136 -> 1 302 : ArgLeuIlePheGlyLeuHisIleThrValCysLeuCysGlnLeuLeuMetPheThrTyrSerC : 323 |||:!! !!!.!.!! ! !:!:! !..! !!:!! !!||||||! !|||||||||||||||| ArgValAlaLeuAlaCysPheLeuMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerC 136 : CGCGTTGCTTTGGCGTGCTTCTTGATGACGGGCGTGAGTCAACTATGGATGTTCACGTATAGTT : 73 324 : ysAspCysIleIleArgGluSerSerSerIleAlaThrAlaAlaAsnArgGlyProTrpProMe : 344 ||||||||:!!! !! !|||||| !!:!|||||| !:!!!.! !! !||||||||| !! ysAspCysLeuThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAs 72 : GCGATTGCCTAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAA : 10 345 : tIlePro : 346 :!!||| nLeuPro 9 : TTTACCA : 2 vulgar: AfOr95 301 346 . LHQN01044749.1 136 1 - 100 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01044749.1 exonerate:protein2genome:local gene 2 136 100 - . gene_id 1 ; sequence AfOr95 ; gene_orientation . LHQN01044749.1 exonerate:protein2genome:local cds 2 136 . - . LHQN01044749.1 exonerate:protein2genome:local exon 2 136 . - . insertions 0 ; deletions 0 LHQN01044749.1 exonerate:protein2genome:local similarity 2 136 100 - . alignment_id 1 ; Query AfOr95 ; Align 137 302 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: LHQN01044749.1 Habropoda laboriosa contig44749, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 293 -> 338 Target range: 136 -> 1 294 : LysValSerLeuValLeuAsnPheAlaGlyThrLeuCysGlnLeuLeuMetPheThrTyrSerC : 315 :::|||:!!|||!.!! ! !!!. ! ! !:!! !!||||||! !|||||||||||||||| ArgValAlaLeuAlaCysPheLeuMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerC 136 : CGCGTTGCTTTGGCGTGCTTCTTGATGACGGGCGTGAGTCAACTATGGATGTTCACGTATAGTT : 73 316 : ysAspAspLeuIleGlnGluSerValLysValGlyAsnAlaIlePheSerGlyProTrpAlaSe : 336 ||||| !|||! ! !||||||:!!!!.:!!!.!.!.:!!:!!!:!:!!||||||||| !!: ysAspCysLeuThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAs 72 : GCGATTGCCTAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAA : 10 337 : rLeuPro : 338 !|||||| nLeuPro 9 : TTTACCA : 2 vulgar: AfOr84 293 338 . LHQN01044749.1 136 1 - 106 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01044749.1 exonerate:protein2genome:local gene 2 136 106 - . gene_id 1 ; sequence AfOr84 ; gene_orientation . LHQN01044749.1 exonerate:protein2genome:local cds 2 136 . - . LHQN01044749.1 exonerate:protein2genome:local exon 2 136 . - . insertions 0 ; deletions 0 LHQN01044749.1 exonerate:protein2genome:local similarity 2 136 106 - . alignment_id 1 ; Query AfOr84 ; Align 137 294 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr77 Target: LHQN01044749.1 Habropoda laboriosa contig44749, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 302 -> 343 Target range: 136 -> 13 303 : ArgLeuIlePheAlaPheHisLeuAlaAlaCysMetCysGlnLeuLeuMetPheThrTyrSerC : 324 |||:!! !!!.|||! ! !||| !.!! !!:!! !!||||||! !|||||||||||||||| ArgValAlaLeuAlaCysPheLeuMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerC 136 : CGCGTTGCTTTGGCGTGCTTCTTGATGACGGGCGTGAGTCAACTATGGATGTTCACGTATAGTT : 73 325 : ysAspCysIleIleGlnGluSerSerSerIleAlaSerAlaValTyrAspGlyProTrp : 343 ||||||||:!!! ! !|||||| !!:!||||||..!:!!||||||! !||||||||| ysAspCysLeuThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrp 72 : GCGATTGCCTAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGG : 14 vulgar: AfOr77 302 343 . LHQN01044749.1 136 13 - 114 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01044749.1 exonerate:protein2genome:local gene 14 136 114 - . gene_id 1 ; sequence AfOr77 ; gene_orientation . LHQN01044749.1 exonerate:protein2genome:local cds 14 136 . - . LHQN01044749.1 exonerate:protein2genome:local exon 14 136 . - . insertions 0 ; deletions 0 LHQN01044749.1 exonerate:protein2genome:local similarity 14 136 114 - . alignment_id 1 ; Query AfOr77 ; Align 137 303 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: LHQN01044749.1 Habropoda laboriosa contig44749, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 308 -> 349 Target range: 136 -> 13 309 : ArgLeuIlePheSerPheHisIleLeuGlyCysLeuCysGlnLeuLeuMetPheSerTyrSerC : 330 |||:!! !!!.:!!! ! !:!::!! ! !!:!! !!||||||! !||||||!!!||||||| ArgValAlaLeuAlaCysPheLeuMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerC 136 : CGCGTTGCTTTGGCGTGCTTCTTGATGACGGGCGTGAGTCAACTATGGATGTTCACGTATAGTT : 73 331 : ysAspCysIleIleArgLysSerValAsnValAlaThrAlaAlaTyrGlyGlyProTrp : 349 ||||||||:!!! !! !:!!|||:!!|||:!!||| !:!!!.!|||!.!||||||||| ysAspCysLeuThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrp 72 : GCGATTGCCTAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGG : 14 vulgar: AfOr91_2 308 349 . LHQN01044749.1 136 13 - 106 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01044749.1 exonerate:protein2genome:local gene 14 136 106 - . gene_id 1 ; sequence AfOr91_2 ; gene_orientation . LHQN01044749.1 exonerate:protein2genome:local cds 14 136 . - . LHQN01044749.1 exonerate:protein2genome:local exon 14 136 . - . insertions 0 ; deletions 0 LHQN01044749.1 exonerate:protein2genome:local similarity 14 136 106 - . alignment_id 1 ; Query AfOr91_2 ; Align 137 309 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_1 Target: LHQN01044749.1 Habropoda laboriosa contig44749, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 305 -> 350 Target range: 136 -> 1 306 : ArgLeuIlePheSerLeuHisValLeuAlaCysLeuCysGlnLeuLeuMetPheSerTyrSerC : 327 |||:!! !!!.:!!! ! !:!!:!!.!! !!:!! !!||||||! !||||||!!!||||||| ArgValAlaLeuAlaCysPheLeuMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerC 136 : CGCGTTGCTTTGGCGTGCTTCTTGATGACGGGCGTGAGTCAACTATGGATGTTCACGTATAGTT : 73 328 : ysAspCysIleIleArgGluSerValAsnValAlaThrAlaAlaTyrGlyGlyProTrpThrLe : 348 ||||||||:!!! !! !||||||:!!|||:!!||| !:!!!.!|||!.!|||||||||! ! ysAspCysLeuThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAs 72 : GCGATTGCCTAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAA : 10 349 : uLeuPro : 350 !|||||| nLeuPro 9 : TTTACCA : 2 vulgar: AfOr91_1 305 350 . LHQN01044749.1 136 1 - 119 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01044749.1 exonerate:protein2genome:local gene 2 136 119 - . gene_id 1 ; sequence AfOr91_1 ; gene_orientation . LHQN01044749.1 exonerate:protein2genome:local cds 2 136 . - . LHQN01044749.1 exonerate:protein2genome:local exon 2 136 . - . insertions 0 ; deletions 0 LHQN01044749.1 exonerate:protein2genome:local similarity 2 136 119 - . alignment_id 1 ; Query AfOr91_1 ; Align 137 306 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: LHQN01044749.1 Habropoda laboriosa contig44749, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 324 -> 369 Target range: 136 -> 1 325 : ArgLeuIlePheValPheHisIleThrGlySerLeuCysGlnLeuLeuLeuPheThrTyrSerC : 346 |||:!! !!!.!.!! ! !:!:! ! !.!!:!! !!||||||! !:!!||||||||||||| ArgValAlaLeuAlaCysPheLeuMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerC 136 : CGCGTTGCTTTGGCGTGCTTCTTGATGACGGGCGTGAGTCAACTATGGATGTTCACGTATAGTT : 73 347 : ysAspSerLeuIleGlnGluSerThrAsnValGlySerAlaValTyrSerGlyProTrpIleCy : 367 |||||!!!|||! ! !|||||| !|||:!!!.!..!:!!||||||:!!|||||||||||| ysAspCysLeuThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAs 72 : GCGATTGCCTAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAA : 10 368 : sLeuPro : 369 !|||||| nLeuPro 9 : TTTACCA : 2 vulgar: AfOr87 324 369 . LHQN01044749.1 136 1 - 114 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01044749.1 exonerate:protein2genome:local gene 2 136 114 - . gene_id 1 ; sequence AfOr87 ; gene_orientation . LHQN01044749.1 exonerate:protein2genome:local cds 2 136 . - . LHQN01044749.1 exonerate:protein2genome:local exon 2 136 . - . insertions 0 ; deletions 0 LHQN01044749.1 exonerate:protein2genome:local similarity 2 136 114 - . alignment_id 1 ; Query AfOr87 ; Align 137 325 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: LHQN01044749.1 Habropoda laboriosa contig44749, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 295 -> 340 Target range: 136 -> 1 296 : ArgAlaSerLeuValValAsnLeuGlyGlyThrPhePheGlnLeuLeuIlePheThrTyrSerC : 317 |||!.!:!!|||!.! ! !||| ! ! ! ! !||||||! !!!:||||||||||||| ArgValAlaLeuAlaCysPheLeuMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerC 136 : CGCGTTGCTTTGGCGTGCTTCTTGATGACGGGCGTGAGTCAACTATGGATGTTCACGTATAGTT : 73 318 : ysAspAsnLeuIleArgGlnSerValAsnValGlyAsnAlaValPheSerGlyProTrpValAs : 338 ||||| !|||! !! !:!!|||:!!|||:!!!.!.!.:!!|||!:!:!!|||||||||:!!|| ysAspCysLeuThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAs 72 : GCGATTGCCTAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAA : 10 339 : nLeuPro : 340 ||||||| nLeuPro 9 : TTTACCA : 2 vulgar: AfOr75P 295 340 . LHQN01044749.1 136 1 - 113 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01044749.1 exonerate:protein2genome:local gene 2 136 113 - . gene_id 1 ; sequence AfOr75P ; gene_orientation . LHQN01044749.1 exonerate:protein2genome:local cds 2 136 . - . LHQN01044749.1 exonerate:protein2genome:local exon 2 136 . - . insertions 0 ; deletions 0 LHQN01044749.1 exonerate:protein2genome:local similarity 2 136 113 - . alignment_id 1 ; Query AfOr75P ; Align 137 296 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr77 Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 184 -> 220 Target range: 312 -> 420 185 : GlnAlaLeuSerLeuTyrHisValGlyIleGlyTyrPheCysPheAspAsnLeuLeuCysValP : 206 ||||||||||||:!!|||!!.|||..!:!: !!|||.!!||||||||||||:::... :::. GlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePhePheIleM 313 : CAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttttcatta : 376 207 : heAsnLeuGlnLeuAlaGlyGlnPheGlnIleLeuGlnTyrLys : 220 .. !|||!!.:!!||||||||||||!::||||||||||||!:! etCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 377 : tgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: AfOr77 184 220 . LHQN01049471.1 312 420 + 112 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 313 420 112 + . gene_id 1 ; sequence AfOr77 ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 313 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 313 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 313 420 112 + . alignment_id 1 ; Query AfOr77 ; Align 313 185 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_1 Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 184 -> 220 Target range: 312 -> 420 185 : GlnThrLeuSerLeuTyrGlnIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIleM : 206 |||.!!||||||:!!||||||:!!..!|||!!!|||.!!||||||||||||...... |||| GlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePhePheIleM 313 : CAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttttcatta : 376 207 : etAsnLeuHisValAlaGlyGlnPheLysValLeuGlnTyrArg : 220 || !|||||||||||||||||||||::::!!|||||||||||| etCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 377 : tgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: AfOr91_1 184 220 . LHQN01049471.1 312 420 + 133 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 313 420 133 + . gene_id 1 ; sequence AfOr91_1 ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 313 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 313 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 313 420 133 + . alignment_id 1 ; Query AfOr91_1 ; Align 313 185 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr87 Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 187 -> 237 Target range: 270 -> 420 188 : LysLeuSerValSerProTyrTyrGluIleLeuPheValLeuGlnValLeuSerLeuTyrHisV : 209 ||| ...:!!! !||| ::: ::: ::! !|||!.!||||||:!!|||!!.| Lys***GlnMetIleProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnV 271 : aaataacaaATGATTCCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAG : 334 210 : alGlyValCysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGl : 230 ||..!|||||||||:!!||||||||||||:::... :::||| !||||||!.!||| !|| alAsnValCysTyrLeuCysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGl 335 : TTAACGTGTGTTACCTTTGCTtcgataacatttttttcattatgtgTCTACACGTGGCTGGTCA : 397 231 : nPheArgIleLeuGlnHisArg : 237 ||||||||||||||||:!!||| nPheArgIleLeuGlnTyrArg 398 : GTTTCGTATACTACAATACAGA : 420 vulgar: AfOr87 187 237 . LHQN01049471.1 270 420 + 128 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 271 420 128 + . gene_id 1 ; sequence AfOr87 ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 271 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 271 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 271 420 128 + . alignment_id 1 ; Query AfOr87 ; Align 271 188 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr84 Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 183 -> 219 Target range: 312 -> 420 184 : GlnIleLeuCysValTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLeuCysIleV : 205 ||| !|||! !||||||!!.|||..!|||||||||:!!||||||||||||:::... |||: GlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePhePheIleM 313 : CAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttttcatta : 376 206 : alAsnLeuHisValAlaGlyGlnPheArgIleLeuGlnHisArg : 219 :: !|||||||||||||||||||||||||||||||||:!!||| etCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 377 : tgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: AfOr84 183 219 . LHQN01049471.1 312 420 + 135 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 313 420 135 + . gene_id 1 ; sequence AfOr84 ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 313 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 313 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 313 420 135 + . alignment_id 1 ; Query AfOr84 ; Align 313 184 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr75P Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 179 -> 219 Target range: 300 -> 420 180 : LeuPheIleIleGlnIleLeuCysValTyrHisValAlaThrCysTyrIleCysPheAspAsnL : 201 ::: ::!! ||| !|||! !||||||!!.||| !..!||||||:!!||||||||||||: IleSerLeuThrGlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnI 301 : atttctctCACGCAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataaca : 364 202 : euLeuCysIleValAsnLeuHisValAlaGlyGlnPheArgIleLeuGlnHisArg : 219 ::... |||::: !|||||||||||||||||||||||||||||||||:!!||| lePhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 365 : tttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: AfOr75P 179 219 . LHQN01049471.1 300 420 + 130 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 301 420 130 + . gene_id 1 ; sequence AfOr75P ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 301 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 301 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 301 420 130 + . alignment_id 1 ; Query AfOr75P ; Align 301 180 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr96 Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 183 -> 219 Target range: 312 -> 420 184 : GlnIleAlaAlaLeuAsnGlnAlaGlySerCysTyrPheCysPheAspAsnIlePheCysIleL : 205 ||| ! !:!!:!! !!|||!.!..! !||||||.!!|||||||||||||||||| |||: GlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePhePheIleM 313 : CAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttttcatta : 376 206 : euCysLeuAsnValAlaCysGlnPheArgIleLeuGlnTyrArg : 219 ::||||||:!!|||||| !!|||||||||||||||||||||||| etCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 377 : tgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: AfOr96 183 219 . LHQN01049471.1 312 420 + 123 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 313 420 123 + . gene_id 1 ; sequence AfOr96 ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 313 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 313 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 313 420 123 + . alignment_id 1 ; Query AfOr96 ; Align 313 184 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr83 Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 175 -> 220 Target range: 285 -> 420 176 : ProTyrTyrGluIleIlePhePheIleGlnGlyValSerLeuTyrTyrIleGlyIleSerTyrP : 197 ||| ::: ||| ..!! |||!.!:!!|||:!!||| ! :!!..!:!:!!!|||. ProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValAsnValCysTyrL 286 : CCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACC : 349 198 : heCysPheAspAsnIlePheCysIleMetAlaValHisLeuAlaGlyGlnPheArgIleLeuAr : 218 !!|||||||||||||||||| ||||||..!:!!|||:!!|||||||||||||||||||||!: euCysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGl 350 : TTTGCTtcgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACA : 412 219 : gTyrArg : 220 !|||||| nTyrArg 413 : ATACAGA : 420 vulgar: AfOr83 175 220 . LHQN01049471.1 285 420 + 131 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 286 420 131 + . gene_id 1 ; sequence AfOr83 ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 286 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 286 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 286 420 131 + . alignment_id 1 ; Query AfOr83 ; Align 286 176 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr90 Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 179 -> 217 Target range: 306 -> 420 180 : IleIleGlnIleValThrLeuTyrCysIleGlyIleCysTyrPheCysPheAspAsnValPheC : 201 ::!! ||| !:!!:!!:!!||| :!!..!:!:||||||.!!||||||||||||:::||| LeuThrGlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePheP 307 : ctCACGCAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttt : 370 202 : ysIleMetAlaIleHisLeuThrGlyGlnPheArgIleLeuGlyTyrArg : 217 ||||||..!:!!|||:!!.!!|||||||||||||||||| !|||||| heIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 371 : tcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: AfOr90 179 217 . LHQN01049471.1 306 420 + 128 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 307 420 128 + . gene_id 1 ; sequence AfOr90 ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 307 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 307 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 307 420 128 + . alignment_id 1 ; Query AfOr90 ; Align 307 180 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr80 Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 183 -> 220 Target range: 309 -> 420 184 : AlaGluValLeuSerIleTyrCysValAlaLeuCysTyrPheCysPheAspAsnValPheCysI : 205 .!!:!!!.!||||||:!:||| ||| !:!!||||||.!!||||||||||||:::||| | ThrGlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePhePheI 310 : ACGCAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttttca : 373 206 : leLeuAlaValHisLeuAlaGlyGlnPheAsnIleLeuLysHisLys : 220 ||:::..!:!!|||:!!||||||||||||..!||||||:!!:!!!:! leMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 374 : ttatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: AfOr80 183 220 . LHQN01049471.1 309 420 + 120 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 310 420 120 + . gene_id 1 ; sequence AfOr80 ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 310 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 310 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 310 420 120 + . alignment_id 1 ; Query AfOr80 ; Align 310 184 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr94 Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 181 -> 219 Target range: 306 -> 420 182 : ValIleGlnAlaLeuCysLeuTyrGlnValGlyIleCysTyrLeuCysValAspAsnMetPheC : 203 ::!! |||||||||! !:!!|||||||||..!:!:|||||||||||| ||||||:::||| LeuThrGlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePheP 307 : ctCACGCAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttt : 370 204 : ysIleMetCysLeuHisLeuAlaSerGlnPheArgIleLeuGlnTyrArg : 219 |||||||||||||||:!!|||.!!|||||||||||||||||||||||| heIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 371 : tcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: AfOr94 181 219 . LHQN01049471.1 306 420 + 153 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 307 420 153 + . gene_id 1 ; sequence AfOr94 ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 307 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 307 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 307 420 153 + . alignment_id 1 ; Query AfOr94 ; Align 307 182 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr95 Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 178 -> 216 Target range: 306 -> 420 179 : ValLeuGluValIleSerLeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPheLeuC : 200 ::! !:!!!.!:!!|||:!!|||!!.:!!..!|||!!!|||.!!||||||||||||...... LeuThrGlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePheP 307 : ctCACGCAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttt : 370 201 : ysIleMetAsnLeuHisValAlaGlyGlnPheGlnValLeuGlnHisArg : 216 |||||| !|||||||||||||||||||||!:::!!||||||:!!||| heIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 371 : tcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: AfOr95 178 216 . LHQN01049471.1 306 420 + 117 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 307 420 117 + . gene_id 1 ; sequence AfOr95 ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 307 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 307 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 307 420 117 + . alignment_id 1 ; Query AfOr95 ; Align 307 179 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr91_2 Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 184 -> 222 Target range: 306 -> 420 185 : LeuSerLeuAlaLeuSerLeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPheLeuC : 206 |||!!!! !|||||||||:!!|||!!.:!!..!|||!!!|||.!!||||||||||||...... LeuThrGlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePheP 307 : ctCACGCAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttt : 370 207 : ysIleMetAsnLeuHisValAlaGlyGlnPheGlnValLeuGlnHisArg : 222 |||||| !|||||||||||||||||||||!:::!!||||||:!!||| heIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 371 : tcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: AfOr91_2 184 222 . LHQN01049471.1 306 420 + 124 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 307 420 124 + . gene_id 1 ; sequence AfOr91_2 ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 307 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 307 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 307 420 124 + . alignment_id 1 ; Query AfOr91_2 ; Align 307 185 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr70 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 260 Query range: 191 -> 313 Target range: 1345 -> 654 192 : AspThrLeuPheAlaGlyPheLeuValGlnIleTyrCysGlnPheGluIleLeuGluGluAr : 212 |||!.!||||||::!|||.!.|||:!!!!.||||||||||||||||||||||||:!!.!.|| AspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisAr 1345 : GACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCG : 1285 213 : gLeuLysAsnValGlnGlnAspGluSerAsnTyrSerAlaLysGlnCysValArgHisTyrH : 233 |||||||!:!:!!:!!! |||..! .!.||||||||||||||||||!.! !|||:!!: gLeuLysSerIleLysProAspArg---GluTyrSerAlaLysGlnCysAlaPheHisHisT 1284 : TCTGAAGAGCATTAAACCTGACAGG---GAGTACTCTGCGAAACAGTGTGCTTTTCATCATT : 1225 234 : isGlnIleTyr{Ly} >>>> Target Intron 1 >>>> {s}PheSerArgThrLeu : 242 !!!::||||||{||} 328 bp {|}|||:!!..!! !:!! yrArgIleTyr{Ly}++ ++{s}PheAlaGluIleIle 1224 : ATCGCATATAC{AA}gt.........................ag{A}TTCGCTGAAATTATA : 870 243 : AsnGluLysPheLysValIleLeuPheLeuGlnPheCysAlaIleSerPheIleLeuCysPh : 263 |||! !||||||!..:!!! :!! ! !|||||| !.!! !!!!.!.! !:!!||||| AsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThrMetCysPh 869 : AACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACAATGTGCTT : 807 264 : eAsnLeuTyrArgMetThrThrIleThrMetIleProLysLeuLeuGluAlaSerLeuTyrL : 284 |||||||!:!|||:!!||| !! !! !:!! ! !!:!!:!!|||! ! !! !! !!:!: eAsnLeuPheArgLeuThrGlnThrLysValTyrSerGlnValLeuAlaLeuIleProPheM 806 : CAACCTCTTTCGACTGACACAGACCAAGGTGTATTCGCAAGTTTTAGCATTGATACCGTTCA : 744 285 : euValArgValLeuValGlnIleLeuTyrTyrCysTrpPheSerAsnGluValLysLeuLys : 304 !!|||!!!|||!!!!.!||||||!!!|||! !||||||!:!.!!||||||..!|||:!!||| etValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys 743 : TGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG : 684 305 : SerLeuGluValProGlyMetIlePhe : 313 !! !!!: ! !!! !.!.:::||| ValArgAspGlnThrAspPheLeuPhe 683 : GTACGTGATCAAACAGACTTCttattc : 655 vulgar: AfOr70 191 313 . LHQN01050085.1 1345 654 - 260 M 29 87 G 1 0 M 15 45 S 0 2 5 0 2 I 0 324 3 0 2 S 1 1 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 655 1345 260 - . gene_id 1 ; sequence AfOr70 ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 1212 1345 . - . LHQN01050085.1 exonerate:protein2genome:local exon 1212 1345 . - . insertions 0 ; deletions 1 LHQN01050085.1 exonerate:protein2genome:local splice5 1210 1211 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 884 1211 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 884 885 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 655 883 . - . LHQN01050085.1 exonerate:protein2genome:local exon 655 883 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 655 1345 260 - . alignment_id 1 ; Query AfOr70 ; Align 1346 192 87 ; Align 1259 222 45 ; Align 883 238 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr116P Target: KQ414583.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold34, whole genome shotgun sequence Model: protein2genome:local Raw score: 1047 Query range: 1 -> 403 Target range: 618937 -> 620811 2 : PheArgLysMetIleAsnTyrLeuLysLysGluThrLysLeuLysLysIleAsnProA : 21 !:! !!!:!||| !.!.!:! ! |||:::||||||||||||||||||!!.|||| TyrGlyArgMetAspGluPheAlaGlyLysGlnThrLysLeuLysLysIleLysProA 618938 : TACGGTAGAATGGACGAGTTTGCGggaaaacaaacgaaattgaaaaagatcAAACCTA : 618995 22 : snLysHisLeuGlnAsnSerLeuSerIleIleTyrTyrValGlyLeuTrpProAspAr : 40 |||||||||||:::||| ::: :::...||||||!.!|||:!!||||||! !: snLysHisLeuLysAsnCysMetLeuLeuPheTyrTyrAlaGlyIleTrpProGlyGl 618996 : acaaacatttgaaaaattgtatgttattattttactatGCGGGAATATGGCCTGGACA : 619052 41 : gValLysTyrLysTyrLeuTyrAsnLeuTyrAlaIleCysSerLeuIlePheLeuVal : 59 !:!!||||||||| !|||||| !!||||||!.!||| !!|||!!!:!:.!!|||:!! nMetLysTyrLysArgLeuTyrTyrLeuTyrGlyIleSerSerPheValIleLeuLeu 619053 : GATGAAATATAAGCGTCTCTATTATCTGTATGGAATTAGCAGTTTTGTGATTTTATTG : 619109 60 : GlyIleIleIleValSerGluIleIleTyrIleIleIleAsnTrpGlyLysIleGluL : 79 !.!.!!! !:!!|||!!!|||.!! |||:!! !:!!:!!|||||| ! !! AlaPheThrLeuValThrGluPheAlaTyrLeuCysValHisTrpGlyAspTyrAlaG 619110 : GCATTTACTCTTGTTACCGAATTCGCGTATCTTTGTGTACATTGGGGAGACTATGCCG : 619169 80 : euMetMetIleGlyLeuThrIleLeuMetThrAsnSerThrTyrAlaAlaLys >>> : 97 !!!:||| !||| !||||||!!!|||||||||! !:!!|||..! !||| luIleMetSerGlyAlaThrIlePheMetThrAsnTyrSerTyrCysLeuLys++ 619170 : AAATAATGTCCGGTGCAACTATTTTTATGACAAATTATTCATATTGTCTGAAGgt... : 619225 98 : > Target Intron 1 >>>> ValIleTyrIleIleCysGlnTyrLysArgIleL : 108 312 bp |||||| !|||:!! !:! !|||||||||| ++ValIleValIleValLeuArgArgLysArgIleL 619226 : ......................agGTAATTGTTATCGTTCTACGACGTAAACGTATCA : 619568 109 : ysAsnLeuValAspIleThrAsnSerGluIlePheAsnArgAspAsnAspLysTyrLy : 127 ||:!!|||:!!:!!||||||.!..!!:!!:!:|||! !|||:!!||||||||||||:! ysAspLeuIleAsnIleThrGluGlyLysLeuPheIleArgAsnAsnAspLysTyrGl 619569 : AAGATCTTATAAATATAACCGAGGGAAAACTGTTTATCCGCAATAACGATAAATACGA : 619625 128 : sHisIleIleSerTyrTyrAsnTrpGlnGlyIlePheHisTyrIleAlaTyrGlnGly : 146 !!.!|||:!!!!!||||||!.!||||||||||||||||||:!!|||.!!||||||.!! uArgIleValThrTyrTyrThrTrpGlnGlyIlePheHisHisIleThrTyrGlnSer 619626 : ACGTATCGTAACGTATTACACTTGGCAAGGAATTTTCCATCATATCACTTATCAAAGC : 619682 147 : PheAlaSerIleSerIlePhePheTyrSerCysIleProLeuGlnSerValPheSerG : 166 |||!.!! !|||:!!:!!.!!|||!::||||||! ! !!:!! !!:!:!!.!.!.!. PheGlyIleIleAlaValIlePheTrpSerCysThrAlaValValAsnLeuMetLysA 619683 : TTCGGTATCATAGCTGTAATCTTCTGGTCATGCACAGCAGTTGTAAATCTGATGAAAC : 619742 167 : luLysSerLysGlnLeuProLeuAlaGlyTrpTyrProTyrAsnValThrSerThrPr : 185 .!! !! !:!!! ||| !:!! !!.!|||||||||||||||||||||! !:!!|| rgThrTyrGlnLeuLeuLeuIleLysAlaTrpTyrProTyrAsnValThrIleSerPr 619743 : GGACGTATCAACTTTTATTGATAAAAGCATGGTATCCTTATAATGTAACAATTTCGCC : 619799 186 : oIlePheGluIleThrTrpLeuHisGlnValLeuValIleLeuIleAsnCysIleAsn : 204 | !!::|||...||| ||||||||||||:!!! !:!! !:::|||||||||||| oAlaTyrGluPheThrIleLeuHisGlnValValGlyValThrValAsnCysIleAsn 619800 : AGCTTAtgaatttactattttacatCAAGTCGTGGGTGTCACTGtaaattgtattaat : 619856 205 : AsnIleAlaIleAspThrLeuIleThrGlyPheIleIleIleThrCysCysGlnLeuT : 224 |||:!!||||||||||||!!!||||||||||||||||||! !.!!||||||||||||| AsnValAlaIleAspThrPheIleThrGlyPheIleIleThrAlaCysCysGlnLeuT 619857 : aatGTAGCAATAGATACTTTTATAACAGGTTTTATAATAACTGCTTGTTGCCAATTGA : 619916 225 : hrIleLeuLysLysCysIleAlaArgAsnAsnAsnValAsn{Il} >>>> Target : 238 ||:!!|||!.. ! !|||:!! !! :!! !!! ! { } 1 hrLeuLeuSerTyrAsnIleSerSerIleHisTyrGluAla{Gl}+- 619917 : CACTCTTAAGTTATAACATCTCTTCGATACACTATGAAGCG{GA}ga........... : 619962 239 : Intron 2 >>>> {e}GluLysSerLeuSerLysIleTyrAsnLysPheTyrGlu : 251 41 bp {!} !|||! !! ...... ::: ::: -+{u}ValLysIleGlnAspAsnLysLysIleArgHisPheLeu 619963 : ..............cg{a}gtAAAAATACAggataataagaaaattcgtcacttttta : 620138 252 : SerLeuLysTyrCysValGluHisSerIleIleIlePheAspPheThrLysGlnIleG : 271 :::|||::: ::: ... |||!:!..!|||.!!::!:!!|||| PheValLysPheMetTyrLysLeuLeuPheAspIleTyrSerPheAlaArgLysIleG 620139 : ttcgtcaaatttatgtataaattattattcgatATTTACAGTTTCGCACGAAAGATTC : 620198 272 : lnAspIlePheGlyIleIleIlePhePheGlnLeuPheValAsnCysIleIleValCy : 290 |||||! !||||||! !:!:|||||||||||||||.!.||||||||||||! !||||| lnAspThrPheGlyThrValIlePhePheGlnLeuLeuValAsnCysIleThrValCy 620199 : AAGATACATTCGGTACTGTGATATTTTTTCAACTGCTGGTAAATTGTATAACCGTTTG : 620255 291 : sLeuAlaAlaPheAsnValSerGln >>>> Target Intron 3 >>>> IleL : 300 |||| !|||!:!|||:!!|||||| 81 bp :!:| sLeuLeuAlaTyrAsnIleSerGln++ ++LeuL 620256 : TTTACTTGCATACAATATATCACAGgt.........................agCTGA : 620366 301 : ysAsnTyrIleThrProGluPhePheGlySerLeuLeuTyrMetCysCysMetIleTy : 319 || !!|||:!! ! !!!!:!!.||||||! !!!!:!!:!!||||||||||||! !|| ysTyrTyrValLeuSerAspLeuPheGlyMetPheMetHisMetCysCysMetThrTy 620367 : AATATTACGTTCTATCCGATTTGTTTGGTATGTTTATGCATATGTGCTGTATGACATA : 620423 320 : rGlnIlePheIleTyrCysTrpHisGlyAsnGluLeuTyrLeuHis >>>> Targe : 335 |||||||||||||||||||||||||||||||||||||||||||||| rGlnIlePheIleTyrCysTrpHisGlyAsnGluLeuTyrLeuHis++ 620424 : TCAAATCTTTATATATTGCTGGCACGGGAACGAACTGTATCTTCATgt.......... : 620473 336 : t Intron 4 >>>> SerMetLysIleCysLeuSerAlaTyrLysAsnAsnTrpTr : 348 68 bp ||||||!!.||||||!!!:!!||||||! !||||||||||| ++SerMetAsnIleCysPheAlaAlaTyrMetAsnAsnTrpTr 620474 : ...............agAGCATGAATATATGTTTTGCCGCTTATATGAATAATTGGTG : 620578 349 : pAsnAsnAsnLysAsnPheAsnTyrAlaLeuLeuIleIleMetIleArgThrGlnIle : 367 |:!!|||!.!|||:!!|||!!. |||||||||:!!:!!||| !!:!.!!||| ! pHisAsnThrLysAspPheLysArgAlaLeuLeuValValMetSerLysAlaGlnArg 620579 : GCATAATACCAAGGATTTTAAACGAGCCTTGCTCGTTGTAATGTCAAAAGCTCAACGA : 620635 368 : ProLeuIleIleIleValGlyLysValUnkMetGluLeuSerLeuGlnAsnPheLeuL : 387 |||:!!|||:!!! !||||||!!.:!! |||||||||||||||:!!||||||:!!| ProIleIleLeuThrValGlyAsnIle---MetGluLeuSerLeuGluAsnPheValL 620636 : CCTATTATTTTAACTGTTGGAAATATT---ATGGAATTATCTTTAGAGAATTTCGTTC : 620692 388 : eu >>>> Target Intron 5 >>>> IleLeuArgThrSerTyrSerIlePhe : 396 || 69 bp ||||||||||||||||||||||||||| eu++ ++IleLeuArgThrSerTyrSerIlePhe 620693 : TAgt.........................agATTCTACGTACATCGTATTCCATTTTT : 620788 397 : ThrLeuLeuLysThrPheThr : 403 |||:!!|||||||||! !||| ThrValLeuLysThrSerThr 620789 : ACCGTTTTAAAAACTTCTACA : 620811 vulgar: AfOr116P 1 403 . KQ414583.1 618937 620811 + 1047 M 95 285 5 0 2 I 0 308 3 0 2 M 141 423 S 0 2 5 0 2 I 0 137 3 0 2 S 1 1 M 60 180 5 0 2 I 0 77 3 0 2 M 36 108 5 0 2 I 0 64 3 0 2 M 42 126 G 1 0 M 10 30 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414583.1 exonerate:protein2genome:local gene 618938 620811 1047 + . gene_id 1 ; sequence AfOr116P ; gene_orientation + KQ414583.1 exonerate:protein2genome:local cds 618938 619222 . + . KQ414583.1 exonerate:protein2genome:local exon 618938 619222 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local splice5 619223 619224 . + . intron_id 1 ; splice_site "GT" KQ414583.1 exonerate:protein2genome:local intron 619223 619534 . + . intron_id 1 KQ414583.1 exonerate:protein2genome:local splice3 619533 619534 . + . intron_id 0 ; splice_site "AG" KQ414583.1 exonerate:protein2genome:local cds 619535 619959 . + . KQ414583.1 exonerate:protein2genome:local exon 619535 619959 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local splice5 619960 619961 . + . intron_id 2 ; splice_site "GA" KQ414583.1 exonerate:protein2genome:local intron 619960 620100 . + . intron_id 2 KQ414583.1 exonerate:protein2genome:local splice3 620099 620100 . + . intron_id 1 ; splice_site "cg" KQ414583.1 exonerate:protein2genome:local cds 620101 620281 . + . KQ414583.1 exonerate:protein2genome:local exon 620101 620281 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local splice5 620282 620283 . + . intron_id 3 ; splice_site "GT" KQ414583.1 exonerate:protein2genome:local intron 620282 620362 . + . intron_id 3 KQ414583.1 exonerate:protein2genome:local splice3 620361 620362 . + . intron_id 2 ; splice_site "AG" KQ414583.1 exonerate:protein2genome:local cds 620363 620470 . + . KQ414583.1 exonerate:protein2genome:local exon 620363 620470 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local splice5 620471 620472 . + . intron_id 4 ; splice_site "GT" KQ414583.1 exonerate:protein2genome:local intron 620471 620538 . + . intron_id 4 KQ414583.1 exonerate:protein2genome:local splice3 620537 620538 . + . intron_id 3 ; splice_site "AG" KQ414583.1 exonerate:protein2genome:local cds 620539 620694 . + . KQ414583.1 exonerate:protein2genome:local exon 620539 620694 . + . insertions 0 ; deletions 1 KQ414583.1 exonerate:protein2genome:local splice5 620695 620696 . + . intron_id 5 ; splice_site "GT" KQ414583.1 exonerate:protein2genome:local intron 620695 620763 . + . intron_id 5 KQ414583.1 exonerate:protein2genome:local splice3 620762 620763 . + . intron_id 4 ; splice_site "AG" KQ414583.1 exonerate:protein2genome:local cds 620764 620811 . + . KQ414583.1 exonerate:protein2genome:local exon 620764 620811 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local similarity 618938 620811 1047 + . alignment_id 1 ; Query AfOr116P ; Align 618938 2 285 ; Align 619535 97 423 ; Align 620102 239 180 ; Align 620363 299 108 ; Align 620539 335 126 ; Align 620665 378 30 ; Align 620764 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: KQ414588.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold11, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 322 -> 380 Target range: 776517 -> 776691 323 : GluLeuGlnAspValTyrGluSerIleTyrGluSerProTrpTyrThrPheSerProA : 342 :::::::!! !|||:!! |||! !|||...:!! !||||||!.! !..! !| LysIleLysIleValHisPheSerArgTyrSerAlaLeuTrpTyrAsnSerAspLysA 776518 : aaaatcaAAATTGTCCATTTTTCTAGATACAGCGCTTTGTGGTATAACAGCGACAAGA : 776575 343 : rgIleArgSerLeuTyrValLeuSerLeuArgSerCysLeuAsnPheProIleLeuTh : 361 ||! !:!||||||!:!||||||:!!||||||!:!||||||::! !||| !:!!|| rgThrGlnSerLeuPheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleTh 776576 : GAACGCAATCGTTGTTTGTATTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAAC : 776632 362 : rAlaGlyGlyLeuIleValLeuAsnLeuGlnSerPheAlaGluIleIleLysAlaAla : 380 ||||||||||||||||..!:!!|||||||||||||||:!!|||:!!! !::::!!:!! rAlaGlyGlyLeuIleThrMetAsnLeuGlnSerPheSerGluValThrArgSerSer 776633 : AGCCGGTGGACTAATTACAATGAACTTGCAAAGTTTCTCAGAGGTAACACGTTCATCG : 776689 vulgar: AfOr112_1 322 380 . KQ414588.1 776517 776691 + 146 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414588.1 exonerate:protein2genome:local gene 776518 776691 146 + . gene_id 1 ; sequence AfOr112_1 ; gene_orientation . KQ414588.1 exonerate:protein2genome:local cds 776518 776691 . + . KQ414588.1 exonerate:protein2genome:local exon 776518 776691 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local similarity 776518 776691 146 + . alignment_id 1 ; Query AfOr112_1 ; Align 776518 323 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414588.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold11, whole genome shotgun sequence Model: protein2genome:local Raw score: 233 Query range: 299 -> 388 Target range: 776393 -> 776799 300 : TyrValIleAlaGlnValValHisIlePhePheLeuThrAlaGlnGlyGlnPheValI : 319 !:!:!!!!: !|||:!!||||||:!!.!!!:!|||||| !! !||||||||||||| PheIleMetIleGlnLeuValHisValLeuTyrLeuThrLeuProGlyGlnPheValI 776394 : TTTATCATGATTCAATTGGTACACGTACTTTATCTAACTCTTCCAGGACAATTCGTGA : 776451 320 : leAspSerHisGluAsnValTyrTrpAsp{Me} >>>> Target Intron 1 >> : 329 |||||:!!:!!|||.!.:!!! ! ...{!!} 61 bp leAspAlaAsnGluGluIleSerGluSer{Il}++ 776452 : TCGACGCGAACGAGGAAATCTCCGAATCG{AT}gt....................... : 776485 330 : >> {t}TyrGluProTyrTrpTyrAsnLeuGlnSerLysMetGlnAlaMetPheVal : 346 {:}|||... !!! ||||||||| !.!.!.!!:!! !|||:!!:!!|||||| ++{e}TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheVal 776486 : ..ag{A}TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTA : 776593 347 : LeuIleLeuArgArgAsnLeuAsnProProLeuLeuThrAlaGlyGlyLeuValGlnL : 366 ||| ||||||!.! !|||::! !!|||! !:!!|||||||||||||||:!! !: LeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrM 776594 : TTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAA : 776653 367 : euAsnLeuAsnThrPheAlaLys >>>> Target Intron 2 >>>> ValVal : 375 !!||||||.!.!:!|||:!!:!! 78 bp :!!||| etAsnLeuGlnSerPheSerGlu++ ++IleVal 776654 : TGAACTTGCAAAGTTTCTCAGAGgt.........................agATTGTA : 776758 376 : LysThrSerValSerTyrPheThrValLeuLysSerVal : 388 ||||||||||||||||||!:!! !||||||||||||||| LysThrSerValSerTyrTyrMetValLeuLysSerVal 776759 : AAGACGTCTGTCTCGTACTACATGGTACTGAAATCCGTA : 776799 vulgar: AfOr106 299 388 . KQ414588.1 776393 776799 + 233 M 29 87 S 0 2 5 0 2 I 0 57 3 0 2 S 1 1 M 44 132 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414588.1 exonerate:protein2genome:local gene 776394 776799 233 + . gene_id 1 ; sequence AfOr106 ; gene_orientation + KQ414588.1 exonerate:protein2genome:local cds 776394 776482 . + . KQ414588.1 exonerate:protein2genome:local exon 776394 776482 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local splice5 776483 776484 . + . intron_id 1 ; splice_site "GT" KQ414588.1 exonerate:protein2genome:local intron 776483 776543 . + . intron_id 1 KQ414588.1 exonerate:protein2genome:local splice3 776542 776543 . + . intron_id 0 ; splice_site "AG" KQ414588.1 exonerate:protein2genome:local cds 776544 776676 . + . KQ414588.1 exonerate:protein2genome:local exon 776544 776676 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local splice5 776677 776678 . + . intron_id 2 ; splice_site "GT" KQ414588.1 exonerate:protein2genome:local intron 776677 776754 . + . intron_id 2 KQ414588.1 exonerate:protein2genome:local splice3 776753 776754 . + . intron_id 1 ; splice_site "AG" KQ414588.1 exonerate:protein2genome:local cds 776755 776799 . + . KQ414588.1 exonerate:protein2genome:local exon 776755 776799 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local similarity 776394 776799 233 + . alignment_id 1 ; Query AfOr106 ; Align 776394 300 87 ; Align 776545 330 132 ; Align 776755 374 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: KQ414588.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold11, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 340 -> 389 Target range: 776544 -> 776691 341 : TyrGluAlaTyrTrpTyrAsnGlySerSerArgThrGlnSerLeuTyrIleLeuValL : 360 |||...|||! |||||||||.!!..!!.!|||||||||||||||!:!:!!|||!.!| TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaL 776545 : TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGT : 776602 361 : euArgLysCysLeuSerProProLysLeuThrGlyGlyGlyLeuValAlaLeuAsnLe : 379 |||||!!.||||||||| !!|||:!!:!!|||!.!|||||||||:!!.!!:!!||||| euArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLe 776603 : TAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTT : 776659 380 : uAspSerPheLeuGlnIleLeuLysAlaSer : 389 |.!.||||||! !:!!:!! !::::!!||| uGlnSerPheSerGluValThrArgSerSer 776660 : GCAAAGTTTCTCAGAGGTAACACGTTCATCG : 776691 vulgar: AfOr111 340 389 . KQ414588.1 776544 776691 + 157 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414588.1 exonerate:protein2genome:local gene 776545 776691 157 + . gene_id 1 ; sequence AfOr111 ; gene_orientation . KQ414588.1 exonerate:protein2genome:local cds 776545 776691 . + . KQ414588.1 exonerate:protein2genome:local exon 776545 776691 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local similarity 776545 776691 157 + . alignment_id 1 ; Query AfOr111 ; Align 776545 341 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr117 Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1357 Query range: 0 -> 404 Target range: 1308263 -> 1305879 1 : MetLysLysProPheAsnLysSerIleAspTyrTyrIleLeuProAsnLysIlePh : 19 ||||||:!!|||! !!!.! !|||||||||||||||||||||||||||||||||.! MetLysGluProSerLysThrSerIleAspTyrTyrIleLeuProAsnLysIleLe 1308263 : ATGAAAGAACCCTCTAAAACGTCGATCGACTATTATATACTACCGAATAAAATCCT : 1308209 20 : eCysSerIleAlaGlyMetTrpProIleAspGluLysSerSerMetPheSerLysI : 38 .|||.!!!!:||||||:!:||||||||||||||||||||||||! ! !!!!|||: uCysGlyMetAlaGlyValTrpProIleAspGluLysSerSerThrArgThrLysL 1308208 : GTGCGGTATGGCCGGTGTCTGGCCTATCGACGAGAAAAGTTCAACGCGTACCAAAC : 1308152 39 : lePheAlaTyrValArgLeuIlePheGlyLeuIleValValSerSerPhePheIle : 56 !!||||||||| !!||||||||||||||||||:!:!.!:!!!:!|||.!.!!.:!: euPheAlaTyrPheArgLeuIlePheGlyLeuValAlaLeuAsnSerMetLeuVal 1308151 : TATTCGCATACTTTCGGCTGATATTCGGATTAGTGGCACTCAATAGCATGTTAGTG : 1308098 57 : ProGluIleIleIleIleAlaMetAsnTrpLysAsnIleLysIleIleAla{G} : 74 |||||||||!!:!!::!! ! !|||||| |||:!!!:!|||:!!|||{|} ProGluIleMetMetValIleSerAsnTrpGlyAsnLeuArgIleLeuAla{G}+- 1308097 : CCAGAAATTATGATGGTAATATCGAATTGGGGCAACTTAAGGATCCTAGCA{G}gc : 1308043 75 : >>>> Target Intron 1 >>>> {ly}IleGlyCysValLeuThrThrIleT : 83 82 bp {||}:!!||||||||||||||||||:!! ++{ly}ValGlyCysValLeuThrThrLeuG 1308042 : .........................ag{GA}GTAGGATGCGTTTTAACAACACTCG : 1307935 84 : hrGlnValLeuPheLysMetLeuTyrLeuIleValArgArgGluLysThrTyrSer : 101 !||| !|||||||||! !:!!|||||||||:!!||||||!!:|||||||||!!! lyGlnSerLeuPheLysThrIleTyrLeuIleMetArgArgAspLysThrTyrArg 1307934 : GGCAATCGTTATTCAAAACGATTTACCTAATAATGAGAAGGGATAAAACCTACAGA : 1307881 102 : LeuTyrTyrLysIleArgSerLeuTrpAsnSerSerAsnAspSerLysGluArgPr : 120 |||||||||:!!||||||..!||||||:!!|||!!!:!!||| !!|||||||||! LeuTyrTyrGluIleArgAspLeuTrpHisSerThrAspAspProLysGluArgGl 1307880 : CTTTACTACGAAATACGTGATCTGTGGCATTCTACCGACGATCCCAAAGAGAGACA : 1307824 121 : o<->TyrGluGluPheAlaTyrTrpAlaArgIlePheSerIleIlePheTyrSerS : 138 ! !:!|||.!..!!|||||||||||||||! !.!!!!!|||:!!|||||||||: nAsnPheGluAsnLeuAlaTyrTrpAlaArgThrIleThrIleValPheTyrSerA 1307823 : GAACTTCGAAAATCTCGCTTATTGGGCAAGAACAATTACAATAGTCTTTTACTCGG : 1307767 139 : erCysMetCysAsnValPheThrPheSerIleAlaAlaAlaIleAspTyrPheLys : 156 !!||||||!! |||||||||||||||!!!.!!||||||.!! !|||||||||! ! laCysMetTrpAsnValPheThrPheThrPheAlaAlaThrHisAspTyrPheMet 1307766 : CCTGCATGTGGAACGTGTTCACATTCACGTTTGCTGCGACCCACGATTATTTCATG : 1307713 157 : PheGluTyrAsnAlaAsnAsnThrGluAsnAsnArgHisLeuProPheIleVal{C : 175 .!!||||||||| !!:!|||.!!|||!!.!:!!:!|||||||||||| !|||{| IleGluTyrAsnIleSerAsnAlaGluLysSerLysHisLeuProPheGluVal{C 1307712 : ATCGAATACAACATCAGCAACGCTGAAAAGAGCAAACACTTGCCCTTCGAAGTC{T : 1307656 176 : y} >>>> Target Intron 2 >>>> {s}IleIleThrArgTyrGlyThrA : 183 |} 295 bp {|} !.!!||||||||||||| y}++ +-{s}---AlaAlaArgTyrGlyThrA 1307655 : G}gt.........................aa{T}---GCTGCTAGGTATGGAACAG : 1307340 184 : spIleSerAlaSerProAsnPheGluIleAlaPhePheTyrGlnIleIleSerAla : 201 |||||!!!||||||||| !||||||||||||||| !!! !|||:!:|||:!!!.! spIleThrAlaSerProLeuPheGluIleAlaPheValCysGlnLeuIleAlaVal 1307339 : ATATCACAGCATCTCCTCTCTTCGAAATCGCTTTCGTTTGTCAACTGATTGCGGTT : 1307286 202 : SerIleCysAlaAlaValIleSerGlyLeuAspThrSerLeuMetThrIleIleLe : 220 :!!.!! |||||| !! !|||||||||||| !|||! !||||||! ||||| AlaPheValAlaAlaSerThrSerGlyLeuAspGlySerCysMetThrThrIleLe 1307285 : GCATTTGTGGCCGCCTCAACCTCAGGCTTGGATGGATCATGTATGACCACGATTTT : 1307229 221 : uHisIleSerGlyGlnPheLysLeuIleAsnIleTrpIleAsnAsnIleGlyIleG : 239 ||||:!!|||||||||||||||||||||!:!! |||:!!!:!!!.!!:|||:!!| uHisValSerGlyGlnPheLysLeuIleSerThrTrpValSerLysMetGlyValG 1307228 : ACACGTATCTGGACAATTCAAATTAATCAGTACGTGGGTCAGCAAAATGGGAGTAG : 1307172 240 : luIleAsnCysAsnProAsnTyrIleArgLysLeuLysIleAspLeuIleLysCys : 257 ||! !||| !!!.||| !||| |||||||||:!!:!:||||||||||||||| luThrAsnValLysProValTyrSerArgLysLeuGluValAspLeuIleLysCys 1307171 : AAACAAATGTCAAACCTGTTTATTCGCGAAAATTAGAAGTGGACCTGATCAAATGC : 1307118 258 : IleArgHisHisGlnGlnIleIle{Hi} >>>> Target Intron 3 >>>> : 266 |||||||||||||||!:!!!:|||{:!} 169 bp IleArgHisHisGlnArgMetIle{As}++ + 1307117 : ATTCGTCATCACCAACGAATGATA{AA}gt.........................a : 1306922 267 : {s}ValValAsnAsnValAsnAsnLeuPheThrProIleIlePheIleGlnLeuL : 284 {!}|||||||||:::||||||||||||||||||||||||:!!|||:!!||||||| +{n}ValValAsnAspValAsnAsnLeuPheThrProIleValPheValGlnLeuL 1306921 : g{C}GTGGTGAATGatgtgaataatttatttactccCATCGTTTTCGTACAACTTC : 1306868 285 : euThrSerGlyIleGluIleCysLeuSerGlyTyrAlaValLeuAspSerAspSer : 302 ||||||||||||||! !|||||||||||||||!:!||||||!!!|||!:!||| euThrSerGlyIleValIleCysLeuSerGlyPheAlaValPheAspAsnAsp--- 1306867 : TTACAAGCGGAATAGTAATTTGTTTAAGTGGATTCGCGGTTTTCGATAACGAC--- : 1306814 303 : AlaAsnAlaAspLeuLeuLysPheIleSerTyrPheIleSerMetGlyIleGlnLe : 321 |||..!.!!|||:!!||||||!:!:!!||||||!!. !|||!!: !!:!:||||| AlaArgThrAspIleLeuLysTyrValSerTyrLeuSerSerIleTrpLeuGlnLe 1306813 : GCCCGTACCGATATTCTGAAATACGTATCTTATTTGTCCTCGATTTGGTTGCAACT : 1306760 322 : uLeuLeuTrpCysTrpProGlyGluIleLeuIleGlnGluSerGlnGluIleGlyH : 340 |||||||||||||! !|||||||||||||||:!!||||||||| !|||||||||| uLeuLeuTrpCysLeuProGlyGluIleLeuValGlnGluSerLeuGluIleGlyH 1306759 : TTTGTTATGGTGTTTGCCCGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGAC : 1306703 341 : isValIleTyrLeuAsnIleProTrpTyrAsnLeuProProIleTyrGlnLysTyr : 358 |||||:!!|||||||||:!!||||||||||||||||||||||||||||||!:! ! isValValTyrLeuAsnValProTrpTyrAsnLeuProProIleTyrGlnArgLys 1306702 : ACGTAGTCTACTTAAATGTACCATGGTACAATTTGCCGCCAATTTACCAGAGAAAA : 1306649 359 : PheCysLeuMetIleValArgThrGlnGlnTyrCysArgIleThrAlaLeuThrPh : 377 .!!|||:!!||||||:!!|||.!!||||||||||||!!!||||||||||||||||| LeuCysMetMetIleLeuArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPh 1306648 : CTTTGCATGATGATCCTTAGGGCACAACAATATTGCAGCATCACGGCATTAACGTT : 1306592 378 : eGlnThrLeuSerIleCysThrLeuThrSer >>>> Target Intron 4 >> : 388 |!:!|||||||||||| !|||||||||||| 629 bp eArgThrLeuSerIleHisThrLeuThrSer++ 1306591 : TCGAACGTTGTCTATTCACACGTTAACGAGCgt....................... : 1306557 389 : >> ValPheAsnThrSerIleSerTyrPheThrLeuLeuArgGlnIleGlnGln : 404 ||||||||||||:!! !||||||||||||||||||||||||!!:|||||| ++ValPheAsnThrAlaAlaSerTyrPheThrLeuLeuArgGlnMetGlnGln 1306556 : ..agGTATTCAATACAGCCGCTTCATATTTCACTTTGCTGCGACAAATGCAACAA : 1305880 vulgar: AfOr117 0 404 . KQ414608.1 1308263 1305879 - 1357 M 73 219 S 0 1 5 0 2 I 0 78 3 0 2 S 1 2 M 46 138 G 0 3 M 54 162 S 0 2 5 0 2 I 0 291 3 0 2 S 1 1 G 1 0 M 89 267 S 0 2 5 0 2 I 0 165 3 0 2 S 1 1 M 35 105 G 1 0 M 85 255 5 0 2 I 0 625 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1305880 1308263 1357 - . gene_id 1 ; sequence AfOr117 ; gene_orientation + KQ414608.1 exonerate:protein2genome:local cds 1308044 1308263 . - . KQ414608.1 exonerate:protein2genome:local exon 1308044 1308263 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1308042 1308043 . - . intron_id 1 ; splice_site "GC" KQ414608.1 exonerate:protein2genome:local intron 1307962 1308043 . - . intron_id 1 KQ414608.1 exonerate:protein2genome:local splice3 1307962 1307963 . - . intron_id 0 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1307655 1307961 . - . KQ414608.1 exonerate:protein2genome:local exon 1307655 1307961 . - . insertions 3 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1307653 1307654 . - . intron_id 2 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1307360 1307654 . - . intron_id 2 KQ414608.1 exonerate:protein2genome:local splice3 1307360 1307361 . - . intron_id 1 ; splice_site "AA" KQ414608.1 exonerate:protein2genome:local cds 1307090 1307359 . - . KQ414608.1 exonerate:protein2genome:local exon 1307090 1307359 . - . insertions 0 ; deletions 1 KQ414608.1 exonerate:protein2genome:local splice5 1307088 1307089 . - . intron_id 3 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1306921 1307089 . - . intron_id 3 KQ414608.1 exonerate:protein2genome:local splice3 1306921 1306922 . - . intron_id 2 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1306560 1306920 . - . KQ414608.1 exonerate:protein2genome:local exon 1306560 1306920 . - . insertions 0 ; deletions 1 KQ414608.1 exonerate:protein2genome:local splice5 1306558 1306559 . - . intron_id 4 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1305931 1306559 . - . intron_id 4 KQ414608.1 exonerate:protein2genome:local splice3 1305931 1305932 . - . intron_id 3 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1305880 1305930 . - . KQ414608.1 exonerate:protein2genome:local exon 1305880 1305930 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1305880 1308263 1357 - . alignment_id 1 ; Query AfOr117 ; Align 1308264 1 219 ; Align 1307960 75 138 ; Align 1307819 121 162 ; Align 1307359 177 267 ; Align 1306920 267 105 ; Align 1306815 303 255 ; Align 1305931 388 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr121 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 740 Query range: 3 -> 257 Target range: 203426 -> 204284 4 : SerGluSerLysLysTyrSerLysAspTyrGluTrpAlaValArgLeuAsnArgPheS : 23 ||| ||| ! !:!!!! !|||!:!|||||||||||||||:!!||||||! !| SerIleSerLeuLeuPheCysProAspPheGluTrpAlaValArgMetAsnArgSerS 203427 : TCGATTTCGTTGCTCTTTTGCCCAGACTTCGAATGGGCAGTTCGGATGAATCGCTCTA : 203484 24 : erLeuAsnLeuIleCysLeuTrpProValGluGluGlnAsnIleArgLysGlnSerTr : 42 |||||!..:!!||| !!|||||| !! !|||!!:!!. ! ::: erLeuArgIleIleGlyLeuTrpPheGluGluAspHisAlaGlyThrMetLysPheLe 203485 : GTTTGAGAATAATTGGTCTTTGGTTTGAAGAAGATCACGCTggaacgatgaaattttt : 203541 43 : pThrLysLeuHisIleIleAlaCysPheMetLeuIleThrPheValCysThrIlePro : 61 ||||||...! !!!:!.! ! ! :!!:!!||| !|||||||||..!:!!||| uArgLysLeuArgAsnMetGlyIleValLeuIleIleLeuPheValCysValLeuPro 203542 : aagaaaattacgcAATATGGGGATCGTGCTGATAATCCTCTTCGTTTGTGTACTTCCT : 203598 62 : CysLeuCysAlaLeu<->LysGlnCysAsnThrLeuMetGluValThrAspAsnLeuA : 80 ||||||! !:!!||| |||||||||:!!!:!||||||! !|||! !|||||||||: CysLeuTyrSerLeuIleLysGlnCysAspSerLeuMetAlaValIleAspAsnLeuS 203599 : TGCCTCTACTCTTTGATCAAACAATGTGACAGTTTAATGGCGGTGATAGATAATCTTT : 203658 81 : laTyrSerIleProLeuIleIleThrThrIleLysPheIleValIleSerSerLysLy : 99 !!|||!!!|||||||||! !|||||| !!!:|||!:!|||||||||! !|||||||| erTyrThrIleProLeuThrIleThrLeuMetLysTyrIleValIleLeuSerLysLy 203659 : CATATACTATTCCTTTGACAATAACACTGATGAAGTATATCGTTATATTGAGTAAAAa : 203715 100 : sLys{V} >>>> Target Intron 1 >>>> {al}LeuSerProIleValAsn : 107 |:::{|} 93 bp {||}|||! !|||:!!|||||| sGlu{V}++ ++{al}LeuLeuProLeuValAsn 203716 : ggaa{g}gt.........................ag{TT}CTCTTGCCACTCGTAAAC : 203832 108 : MetIleAlaLysAspTrpLeuLysLeuLysThrAspTyrGluLysAspValMetIleG : 127 |||||||||:!!|||||| !|||||||||||||||!:!|||!:!||||||||||||| MetIleAlaGluAspTrpAlaLysLeuLysThrAspPheGluArgAspValMetIleG 203833 : ATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATTTCGAAAGAGACGTGATGATAC : 203892 128 : lnArgAlaArgIleAlaArgIleIleAsnIlePheGlyTyrIleLeuMetCysIleLe : 146 |||||.!!||||||.!!||| !! !!:!|||.!..!!||| |||!!:! !! ! lnArgThrArgIleThrArgAlaThrSerIleLeuSerTyrAlaLeuIlePheThrAl 203893 : AACGAACACGAATTACCCGAGCAACCAGTATACTGAGTTATGCGTTAATATTTACTGC : 203949 147 : uIleTrpLeuLeuMetIleLeuProArgPheGlyIleThrIleArgTyrValMetAsn : 165 !:!! !!!!:!!!!::!!||||||||| !|||||||||! !|||||||||! ||| aValMetPheMetIleValLeuProArgThrGlyIleThrThrArgTyrValThrAsn 203950 : AGTAATGTTCATGATAGTCCTACCAAGAACCGGTATTACCACTAGATACGTAACAAAC : 204006 166 : GlyThrAspAlaLysLysLeuPheProLeuProThrTyrTyrIlePheAspValSerG : 185 ! !|||:!! !|||||||||||||||:!!|||||||||||||||:::|||:::|||| GluThrAsnIleLysLysLeuPheProValProThrTyrTyrIleTyrAspIleSerG 204007 : GAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttattatatttacgatataTCTG : 204066 186 : luThrProTyrPheGluIleThrTyrThrLeuGlnSerIleSerLeuLeuIleAlaAl : 204 ||||||||||||||||||||! !!:! !||||||! ! !!!!|||:!!:!! !|| luThrProTyrPheGluIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAl 204067 : AAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGC : 204123 205 : aPheCysTyrAlaGlyValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGly : 223 |.!!|||||| !||||||||||||||||||||||||||||||||||||||||||||| aLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGly 204124 : ACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGC : 204180 224 : GlnLeuThrAsnLeuArgPheGlnLeuAlaAsnMetLysGluSerGluThrSerAsnP : 243 |||||| !||||||||| !:!|||||||||!!:|||.!.! !||||||! !:!! GlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysHisLeuGluThrPheAspA 204181 : CAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAACATTTGGAAACTTTTGATC : 204240 244 : heValLeuIleAlaIleValLysAspHisIleArgLeuIleArg : 257 !:!!|||:!:.!!! |||:!!||||||:!:|||||||||||| rgIleLeuValThrThrValGluAspHisValArgLeuIleArg 204241 : GTATTTTAGTGACCACGGTAGAAGATCATGTGCGACTTATTAGG : 204284 vulgar: AfOr121 3 257 . KQ414617.1 203426 204284 + 740 M 63 189 G 0 3 M 34 102 S 0 1 5 0 2 I 0 89 3 0 2 S 1 2 M 156 468 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203427 204284 740 + . gene_id 1 ; sequence AfOr121 ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203427 203721 . + . KQ414617.1 exonerate:protein2genome:local exon 203427 203721 . + . insertions 3 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 203722 203723 . + . intron_id 1 ; splice_site "gt" KQ414617.1 exonerate:protein2genome:local intron 203722 203814 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 203813 203814 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 203815 204284 . + . KQ414617.1 exonerate:protein2genome:local exon 203815 204284 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203427 204284 740 + . alignment_id 1 ; Query AfOr121 ; Align 203427 4 189 ; Align 203619 67 102 ; Align 203817 102 468 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr121 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 330 Query range: 290 -> 386 Target range: 204585 -> 204943 291 : IleTyrIleGluGluGluGlnPheSerLeuLeuArgIleIleTyrLeuIleCysAsnP : 310 ||| !! !:!!|||||||||||||||:!!|||||||||! !|||||| !|||! !| IleLeuThrGlnGluGluGlnPheSerValLeuArgIleThrTyrLeuAlaCysIleP 204586 : ATACTCACCCAGGAAGAGCAATTTTCCGTATTACGAATAACCTATTTAGCCTGTATTT : 204643 311 : heThrAsnThrPheLeuGlnThrPheLeuTyrPheMetAlaGlyGlnMetLeuValTh : 329 || !||||||||||||||||||! !||||||! !!!:.!!||||||!!:||||||!. heLeuAsnThrPheLeuGlnThrSerLeuTyrCysIleThrGlyGlnIleLeuValAs 204644 : TTCTGAATACATTTCTTCAAACGTCTCTCTACTGTATCACAGGACAAATTTTAGTAAA : 204700 330 : rGln >>>> Target Intron 1 >>>> SerGluGluIleHisAsnAlaAlaT : 339 !||| 70 bp |||||||||:!!:!! !||||||| nGln++ ++SerGluGluValTyrValAlaAlaT 204701 : TCAGgt.........................agTCCGAAGAAGTATACGTTGCTGCGT : 204800 340 : yrGluCysGluTrpValSerLeuLysTyrThrLysAlaLysSerLeuIleIleIleMe : 358 ||||||||||||||:!!!:!||||||! !.!||||||||||||||||||:!!||||| yrGluCysGluTrpLeuAsnLeuLysSerAsnLysAlaLysSerLeuIleLeuIleMe 204801 : ACGAATGCGAATGGTTGAATTTGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCAT : 204857 359 : tAlaArgSerLysLysProLeuTyrLeuThrAlaGlyLysLeuPheProValThrMet : 377 |||||||:!!:!!!:!||||||! !||||||||||||||||||||||||::!|||||| tAlaArgAlaGlnArgProLeuCysLeuThrAlaGlyLysLeuPheProMetThrMet 204858 : GGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGcaggaaaattatttcctatGACGATG : 204914 378 : LeuThrPheCysAsnIleLeuLysIle : 386 |||||||||||||||:!! !:!!:!! LeuThrPheCysAsnValThrGlnLeu 204915 : CTAACGTTTTGCAACGTCACTCAGCTA : 204943 vulgar: AfOr121 290 386 . KQ414617.1 204585 204943 + 330 M 40 120 5 0 2 I 0 66 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204586 204943 330 + . gene_id 2 ; sequence AfOr121 ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 204586 204705 . + . KQ414617.1 exonerate:protein2genome:local exon 204586 204705 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 204706 204707 . + . intron_id 1 ; splice_site "GT" KQ414617.1 exonerate:protein2genome:local intron 204706 204775 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 204774 204775 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 204776 204943 . + . KQ414617.1 exonerate:protein2genome:local exon 204776 204943 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204586 204943 330 + . alignment_id 2 ; Query AfOr121 ; Align 204586 291 120 ; Align 204776 331 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr121 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 328 -> 387 Target range: 3178740 -> 3178917 329 : ThrGlnSerGluGluIleHisAsnAlaAlaTyrGluCysGluTrpValSerLeuLy : 347 :!!|||||||||:!!:!! !.!.||| !|||||| !!:|||..!:!!||| SerGlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuPr 3178741 : TCCCAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCC : 3178795 348 : sTyrThrLysAlaLysSerLeuIleIleIleMetAlaArgSerLysLysProLeuT : 366 ! !! ! !|||..!|||:!::!:||||||||||||||||||::!|||:!! oThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValL 3178796 : CACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTA : 3178852 367 : yrLeuThrAlaGlyLysLeuPheProValThrMetLeuThrPheCysAsnIleLeu : 384 ! :!!|||::!||| ! :!! !! !:!!:!! !:!!||| ::!:!! ! ysMetThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerValSer 3178853 : AAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTTAGT : 3178906 385 : LysIleSer : 387 !:!|||||| ArgIleSer 3178907 : AGAATTTCC : 3178917 vulgar: AfOr121 328 387 . KQ414646.1 3178740 3178917 + 116 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178741 3178917 116 + . gene_id 1 ; sequence AfOr121 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178741 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178741 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178741 3178917 116 + . alignment_id 1 ; Query AfOr121 ; Align 3178741 329 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr116P Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 265 -> 333 Target range: 3155808 -> 3156009 266 : PheThrLysGlnIleGlnAspIlePheGlyIleIleIlePhePheGlnLeuPheVa : 284 |||||| ..!|||.!.!!: !|||! !!!: |||||| !|||!!! || PheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAlaVa 3155809 : TTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGT : 3155863 285 : lAsnCysIleIleValCysLeuAlaAlaPheAsnValSerGlnIleLysAsnTyrI : 303 |!:! :!: :!!|||!!! ! !!:! :!!!!! ! ..!:!! ! lSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGly---SerAspValT 3155864 : GAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGA---TCAGATGTGA : 3155917 304 : leThrProGluPhePheGlySerLeuLeuTyrMetCysCysMetIleTyrGlnIle : 321 !! !..!!:! ! ! !! !:!!:!!|||! !!||||||:!! |||||| hrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIle 3155918 : CGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATA : 3155971 322 : PheIleTyrCysTrpHisGlyAsnGluLeuTyrLeu : 333 |||||||||||||||:!!|||||||||:!! ! ||| PheIleTyrCysTrpTyrGlyAsnGluValLysLeu 3155972 : TTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTG : 3156009 vulgar: AfOr116P 265 333 . KQ414646.1 3155808 3156009 + 108 M 33 99 G 1 0 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155809 3156009 108 + . gene_id 1 ; sequence AfOr116P ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155809 3156009 . + . KQ414646.1 exonerate:protein2genome:local exon 3155809 3156009 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3155809 3156009 108 + . alignment_id 1 ; Query AfOr116P ; Align 3155809 266 99 ; Align 3155908 300 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr116P Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 269 -> 333 Target range: 3150616 -> 3150805 270 : IleGlnAspIlePheGlyIleIleIlePhePheGlnLeuPheValAsnCysIleIl : 288 !!:|||!!:! ||| !! |||||| ! ! ||||||!!. !!:! :!::! MetGlnGluLysPheArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuVa 3150617 : ATGCAAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGGT : 3150671 289 : eValCysLeuAlaAlaPheAsnValSerGlnIleLysAsnTyrIleThrProGluP : 307 !||||||!!! ! !!:!.!.:!!:!!.!.! |||!:! !!:!!! lValCysPheIleLeuTyrGluLeuAlaAsnThrProPro---IleSerSerLysT 3150672 : AGTGTGTTTCATCCTGTACGAATTGGCGAACACGCCTCCA---ATCAGCTCCAAGT : 3150725 308 : hePheGlySerLeuLeuTyrMetCysCysMetIleTyrGlnIlePheIleTyrCys : 325 :!.!. !! !:!!||||||:!!..!||||||!!: |||||||||.!!|||||| yrLeuGlnPheValLeuTyrLeuAlaCysMetMetThrGlnIlePhePheTyrCys 3150726 : ACCTGCAATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATCTTCTTTTACTGC : 3150779 326 : TrpHisGlyAsnGluLeuTyrLeu : 333 |||:!!|||.!.:!!||| ! ||| TrpTyrGlyGluGlnLeuLysLeu 3150780 : TGGTACGGCGAGCAGTTGAAACTG : 3150805 vulgar: AfOr116P 269 333 . KQ414646.1 3150616 3150805 + 105 M 32 96 G 1 0 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150617 3150805 105 + . gene_id 2 ; sequence AfOr116P ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150617 3150805 . + . KQ414646.1 exonerate:protein2genome:local exon 3150617 3150805 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3150617 3150805 105 + . alignment_id 2 ; Query AfOr116P ; Align 3150617 270 96 ; Align 3150713 303 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr121 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 330 -> 390 Target range: 1387619 -> 1387799 331 : SerGluGluIleHisAsnAlaAlaTyrGluCysGluTrpValSerLeuLysTyrTh : 349 ||||||...||| .!.:!:...|||... ||| !..!|||||| ! SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 350 : rLysAlaLysSerLeuIleIleIleMetAlaArgSerLysLysProLeuTyrLeuT : 368 !:!!|||::: :::::::::|||::: ||||||:!!||| !||| |||| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 369 : hrAlaGlyLysLeuPheProValThrMetLeuThrPheCysAsnIleLeuLysIle : 386 |||||||||||!!! ! !:!!:!!:!! !.!!|||..!|||::: ... hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnValArgAsn*** 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgtaagaaattga : 1387785 387 : SerLeuSerTyr : 390 :::... ||| AsnPheArgTyr 1387786 : aattttcggtaT : 1387799 vulgar: AfOr121 330 390 . KQ414716.1 1387619 1387799 + 100 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387799 100 + . gene_id 1 ; sequence AfOr121 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387799 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387799 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387799 100 + . alignment_id 1 ; Query AfOr121 ; Align 1387620 331 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 162 -> 224 Target range: 887588 -> 887774 163 : AsnValSerArgGlyArgGluLeuIleTyrProSerTyrTyrPheValAspGluGluL : 182 ||| !!!!..! !|||:!! !:!!|||||| ! ! ||| !:!!|||...|||| AsnArgThrGluProArgGlnThrLeuTyrProValGluTyrHisIleAspSerGluL 887589 : AACCGGACCGAACCCAGACAGACTCTATACCCAGTGGAGTACCACATCgacagtgaaa : 887646 183 : ysTyrTyrTyrProIleLeuMetHisMetIleAlaValAlaLeuIleLeuThrSerVa : 201 |||||:::||| ||| ! ||| !||| !.!!:!!:!!||| ! ! ysTyrPheTyrLeuIleThrAlaHisCysTyrAlaSerThrValLeuLeuLeuLeuGl 887647 : aatatttttacctgATTACAGCTCATTGTTACGCCTCGACAGTACTTCTTCTGCTTCA : 887703 202 : lTyrValAlaCysAspThrTyrLeuValTyrIleValHisHisGlyCysAlaLeuLeu : 220 ! !|||!.! !|||||| ! !:!! !:!:|||!!.|||||||||||||||!!! nThrValValHisAspThrMetTyrIleValLeuValGlnHisGlyCysAlaLeuPhe 887704 : AACTGTCGTACACGACACAATGTACATTGTTCTGGTCCAACATGGCTGCGCTTTATTC : 887760 221 : AlaIleSerGly : 224 |||:!!!!!||| AlaValThrGly 887761 : GCAGTTACGGGG : 887774 vulgar: AfOr111 162 224 . KQ414735.1 887588 887774 + 132 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 887589 887774 132 + . gene_id 1 ; sequence AfOr111 ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 887589 887774 . + . KQ414735.1 exonerate:protein2genome:local exon 887589 887774 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 887589 887774 132 + . alignment_id 1 ; Query AfOr111 ; Align 887589 163 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 452 Query range: 141 -> 380 Target range: 14118 -> 12496 142 : ProMetValProProIleLeuAspIleIleMetProLeuAsnValSerArgLysArgIle : 161 |||:!!..!|||! !||||||||||||:!!:!:||| !|||! !|||||| ! ! ProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAla 14118 : CCGGTGACACCGCATATTTTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCG : 14061 162 : LeuLeuTyrProAlaTyrPheTrpLeuAspAspGluLysTyrTyrValLeuLeuLeuGly : 181 ! !:!!||||||||||||!:!!:: !|||!!:.!.|||||| !!|||! !:!!:!! ! TyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThr 14060 : TACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACG : 14001 182 : HisMetIleIleThrIleLeuMetIleCysPheIlePheCysAlaCysAspMetAsnTyr : 201 |||||| !..!||||||:!!:!:! !!:!:!:!:! !|||||||||! !:!||| HisMetAlaSerValIleLeuValValPheTyrValTyrValAlaCysAspThrSerTyr 14000 : CACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTAC : 13941 202 : ValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla{Ly} >>>> Target : 216 :!!|||!.!|||||||||!.!|||||||||||||||:!::!!{ } 26 IleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSer{Gl}++ 13940 : ATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCC{GG}gt............ : 13892 217 : Intron 1 >>>> {s}TyrArgPheLysAsnValCysLysAspLeuAsnAspLysGlu : 230 5 bp {!}||||||!:!||| !!.! ! !!!:|||::!..!::!:!! ++{y}TyrArgTyrLysCysAlaIleValGluLeuSerSerArgLys 13891 : .............ag{A}TATCGTTACAAATGTGCGATCGTGGAATTGTCCAGTCGGAAA : 13589 231 : AspHisAlaMetProLeuGluLysIleLysTyrLysSerIleCysGluSerIleLysAla : 250 :!!::!:!: !!! !!!::!!||| |||!:!!!!:!:|||.!.||||||:!!!.! ArgAsnSerValThrGlnAspGluIle---TyrArgArgValCysHisSerIleGlnGly 13588 : AGGAACAGTGTCACGCAGGATGAAATT---TATAGAAGAGTGTGTCATTCGATTCAAGGA : 13532 251 : HisGlnHisAlaLeuLys<->TyrLeuArgLeuIleGluAsnSerTyrHisThrTyrLeu : 269 ||||||||||||:!!||| |||::: |||...... ... ||| HisGlnHisAlaIleLysSerValLeuLysLysIleArgGlnIleValLeuAsnValLeu 13531 : CACCAGCATGCTATAAAGtcggtattaaaaaagatacgtcaaattgttttaaatgttCTT : 13472 270 : PheValSerMetGlyLeuLeuIleMetAla{Il} >>>> Target Intron 2 >>> : 280 ! ! !!! ! .!!:!!||| !:!! !{ } 578 bp CysPheLeuSerSerMetLeuGlnLeuArg{Se}++ 13471 : TGCTTTTTGTCTAGCATGTTACAATTGCGC{TC}gt........................ : 13435 281 : > {e}SerValSerLeuLeuGluValAlaAsnGlyLysAsnGlySerArgLysLeuVal : 298 {!}!!!:!!|||! ! !:!!|||:!!|||..!:!!! !..!:!!..! ! ! ++{r}ThrIleSerTrpLysGlnValSerAsnSerGluIleAsnAlaGluPheAlaLys 13434 : .ag{A}ACAATTTCTTGGAAACAGGTGTCGAACTCGGAGATTAATGCGGAGTTTGCCAAG : 12807 299 : GlnAlaThrPheLeuPheAlaGlnLeuPheHisThrPheIleLeuThrValGlnGlyGln : 318 .!...!||||||:!! ! !|||||| ! |||! !.!! !||||||:!!||||||||| AspCysThrPheIleValIleGlnLeuValHisIleLeuTyrLeuThrLeuGlnGlyGln 12806 : GATTGCACATTTATCGTGATTCAATTGGTACACATACTTTACCTAACTCTTCAAGGACAA : 12747 319 : PheValIleAsnGluLeuGlnAspValTyrGluSer{Il} >>>> Target Intron : 331 |||||||||:!!! ! !:!!!!::!!!:!||||||{||} 62 bp PheValIleAspAlaAsnGluGluIlePheGluSer{Il}++ 12746 : TTCGTGATCGACGCGAACGAGGAAATCTTCGAATCG{AT}gt.................. : 12704 332 : 3 >>>> {e}TyrGluSerProTrpTyrThrPheSerProArgIleArgSerLeuTyr : 347 {|}|||...:!! !||||||!.! !..! !|||! !:!||||||!:! ++{e}TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPhe 12703 : .......ag{A}TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTT : 12598 348 : ValLeuSerLeuArgSerCysLeuAsnPheProIleLeuThrAlaGlyGlyLeuIleVal : 367 ||||||:!!||||||!:!||||||::! !||| !:!!||||||||||||||||||..! ValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThr 12597 : GTATTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACA : 12538 368 : LeuAsnLeuGlnSerPheAlaGluIleIleLysAlaAla : 380 :!!|||||||||||||||:!!|||:!!! !!..:!!:!! MetAsnLeuGlnSerPheSerGluValThrSerSerSer 12537 : ATGAACTTGCAAAGTTTCTCAGAGGTAACAAGTTCATCG : 12497 vulgar: AfOr112_1 141 380 . KQ414772.1 14118 12496 - 452 M 74 222 S 0 2 5 0 2 I 0 261 3 0 2 S 1 1 M 23 69 G 1 0 M 16 48 G 0 3 M 23 69 S 0 2 5 0 2 I 0 574 3 0 2 S 1 1 M 50 150 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 12497 14118 452 - . gene_id 1 ; sequence AfOr112_1 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 13895 14118 . - . KQ414772.1 exonerate:protein2genome:local exon 13895 14118 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 13893 13894 . - . intron_id 1 ; splice_site "gt" KQ414772.1 exonerate:protein2genome:local intron 13630 13894 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 13630 13631 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 13438 13629 . - . KQ414772.1 exonerate:protein2genome:local exon 13438 13629 . - . insertions 3 ; deletions 1 KQ414772.1 exonerate:protein2genome:local splice5 13436 13437 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 12860 13437 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 12860 12861 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 12707 12859 . - . KQ414772.1 exonerate:protein2genome:local exon 12707 12859 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 12705 12706 . - . intron_id 3 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 12645 12706 . - . intron_id 3 KQ414772.1 exonerate:protein2genome:local splice3 12645 12646 . - . intron_id 2 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 12497 12644 . - . KQ414772.1 exonerate:protein2genome:local exon 12497 12644 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 12497 14118 452 - . alignment_id 1 ; Query AfOr112_1 ; Align 14119 142 222 ; Align 13629 217 69 ; Align 13560 241 48 ; Align 13509 257 69 ; Align 12859 281 150 ; Align 12644 332 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 369 Query range: 255 -> 389 Target range: 20050 -> 19369 256 : LysTyrLeuArgLeuIleGluAsnSerTyrHisThrTyrLeuPheValSerMetGlyLeu : 275 !:!||||||!:!! !||||||:!!|||:!!!.!! !|||||||||:!!|||||||||:!! ArgTyrLeuLysHisIleGluAspSerHisArgIleTyrLeuPheIleSerMetGlyMet 20050 : AGATATCTGAAACATATCGAGGACAGCCATCGTATTTACCTGTTCATCTCGATGGGAATG : 19993 276 : LeuIleMetAlaIleSerValSerLeuLeuGluValAlaAsnGlyLysAsnGlySerArg : 295 |||!!:!!:||||||||||||||||||||| ||| ! ! LeuMetIleAlaIleSerValSerLeuLeuThrValGluTyrPheLeuValThrValPhe 19992 : CTGATGATAGCTATCAGCGTGTCTTTGTTAAcggtagaatattttttagtcACAGTCTTc : 19933 296 : LysLeuValGlnAlaThrPheLeuPhe{A} >>>> Target Intron 1 >>>> { : 305 ::: ||| :::{!} 81 bp { LeuIleSerLeuPheLeuPheCysTyr{G}++ -+{ 19932 : ttaatttctctctttcttttttgttac{g}gt.........................cg{ : 19821 306 : la}GlnLeuPheHisThrPheIleLeuThrValGlnGlyGlnPheValIleAsnGluLeu : 324 .!}||| !||||||..!|||.!!|||!.!||||||||||||||||||||||||! !!!! ly}GlnAlaPheHisValPhePheLeuAsnValGlnGlyGlnPheValIleAsnAlaPhe 19820 : GC}CAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGGACAATTTGTGATAAACGCATTC : 19765 325 : GlnAspValTyrGluSer{Il} >>>> Target Intron 2 >>>> {e}TyrGlu : 333 .!.!!::!!|||!!:!.!{||} 113 bp {|}|||||| AspGluLeuTyrAspLys{Il}++ ++{e}TyrGlu 19764 : GACGAACTGTACGACAAG{AT}gt.........................ag{A}TACGAA : 19625 334 : SerProTrpTyrThrPheSerProArgIleArgSerLeuTyrValLeuSerLeuArgSer : 353 |||! !||||||!.!|||!!!||||||! !!:!:!!||||||||||||:!!||||||||| SerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeuArgSer 19624 : TCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTGAGAAGC : 19565 354 : CysLeuAsnPheProIleLeuThrAlaGlyGlyLeuIleValLeuAsnLeuGlnSerPhe : 373 ||||||||| |||:!:|||||||||||||||:!!! ..!|||||||||!:!|||||| CysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSerPhe 19564 : TGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATCGTTC : 19505 374 : AlaGlu >>>> Target Intron 3 >>>> IleIleLysAlaAlaValSerTyrT : 384 |||||| 85 bp ||||||||||||:!!|||||||||| AlaGlu++ ++IleIleLysAlaSerValSerTyrT 19504 : GCAGAGgt.........................agATCATCAAAGCATCTGTTTCCTACT : 19387 385 : yrThrValMetGlnThr : 389 ||||||||||||||||| yrThrValMetGlnThr 19386 : ACACGGTGATGCAGACC : 19370 vulgar: AfOr112_1 255 389 . KQ414772.1 20050 19369 - 369 M 49 147 S 0 1 5 0 2 I 0 77 3 0 2 S 1 2 M 25 75 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 44 132 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 19370 20050 369 - . gene_id 2 ; sequence AfOr112_1 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 19903 20050 . - . KQ414772.1 exonerate:protein2genome:local exon 19903 20050 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 19901 19902 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 19822 19902 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 19822 19823 . - . intron_id 0 ; splice_site "CG" KQ414772.1 exonerate:protein2genome:local cds 19743 19821 . - . KQ414772.1 exonerate:protein2genome:local exon 19743 19821 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 19741 19742 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 19630 19742 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 19630 19631 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 19497 19629 . - . KQ414772.1 exonerate:protein2genome:local exon 19497 19629 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 19495 19496 . - . intron_id 3 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 19412 19496 . - . intron_id 3 KQ414772.1 exonerate:protein2genome:local splice3 19412 19413 . - . intron_id 2 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 19370 19411 . - . KQ414772.1 exonerate:protein2genome:local exon 19370 19411 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 19370 20050 369 - . alignment_id 2 ; Query AfOr112_1 ; Align 20051 256 147 ; Align 19820 306 75 ; Align 19629 332 132 ; Align 19412 376 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 367 Query range: 83 -> 376 Target range: 33964 -> 31763 84 : PheLeuAspGluThrLysLeuIleThrIleLeuAsnHisIlePheGluAspTrpAlaAla : 103 !:!! ! :!! !:!!|||! |||:!!!!!.!. !||||||.!.|||||| !.!! TyrArgThrLysLeuGlnLeuLysThrLeuPheGluCysIlePheAsnAspTrpIleThr 33964 : TATCGTACGAAATTGCAGCTAAAGACACTATTCGAATGCATATTCAACGATTGGATAACG : 33907 104 : IleLysThrLysGluGluTyrGluIleMetTyrLysTyrSerArgArgGlyLeuPheIle : 123 ! !::! !!|||...||| ||||||||| !!||||||:!!|||||||||||||||.!! ArgArgProLysSerGluMetGluIleMetAspLysTyrAlaArgArgGlyLeuPhePhe 33906 : AGACGACCGAAAAGCGAGATGGAAATAATGGACAAGTATGCGAGGAGGGGCCTGTTTTTC : 33847 124 : ThrIleSerTyrPhe{L} >>>> Target Intron 1 >>>> {eu}HisIleGly : 132 !.! !! !||| !!{ } 153 bp { !}:!! !! ! AsnArgLeuTyrVal{A}++ ++{la}AsnGlyVal 33846 : AATCGCTTGTACGTC{G}gt.........................ag{CA}AACGGAGTG : 33667 133 : IleThrGluThrPheMetLeuMetTrpProMetValProProIleLeuAspIleIleMet : 152 .!! ! ! ! !.!..!. ! ! !|||.!.:!!|||! !.!!:!!|||:!! :!! PheCysTyrIleMetPheSerSerAlaProPheIleProHisPheIleAspValAlaLeu 33666 : TTTTGCTACATCATGTTCAGCTCGGCGCCTTTTATACCGCATTTTATCGATGTTGCGTTG : 33607 153 : ProLeuAsnValSerArgLysArgIleLeuLeuTyrProAlaTyrPheTrpLeuAspAsp : 172 !! !|||! !||||||||| !! !|||:!!||||||||||||!:! ! :!!|||.!. SerLysAsnGluSerArgLysLeuSerLeuMetTyrProAlaTyrTyrGlyIleAspGln 33606 : TCGAAAAACGAGTCACGAAAATTAAGTTTGATGTACCCTGCCTATTACGGCATTGACCAG : 33547 173 : GluLysTyrTyrValLeuLeuLeuGlyHisMetIleIleThrIleLeuMetIleCysPhe : 192 !::||||||||| |||:::!.!||||||!!:! !.!! ! !:!:! !||| AspLysTyrTyrTyrTyrLeuMetAlaHisMetMetSerAlaGlyAlaAlaValPhePhe 33546 : GacaagtattattattatctaatgGCTCACATGATGAGCGCAGGGGCAGCGGTGTTTTTC : 33487 193 : IlePheCysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeu : 212 :!!||| :!!||||||! !! !|||:!! !! !|||||||||||||||||||||||| ValPheMetSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeu 33486 : GTATTTATGTCCTGCGACACGATTTATATGAATATCGTTCAACACGCGTGCGGATTGTTG : 33427 213 : AlaIleAla{Ly} >>>> Target Intron 2 >>>> {s}TyrArgPheLysAsn : 221 !|||:!!{ } 79 bp {!}:!!||||||||| ! PheIleSer{Gl}++ ++{y}HisArgPheLysCys 33426 : TTCATTTCC{GG}gt.........................ag{G}CATCGTTTTAAGTGC : 33321 222 : ValCysLysAspLeuAsnAspLysGluAspHisAlaMetPro<->LeuGluLysIleLys : 240 !.! !:!!||| !...! ! ! !!:!!: ! !.!! ||| :!! !:!! !! ! AlaIleGluAspAspGlyAlaAspAspGluLysValAsnProThrMetLeuGluAspMet 33320 : GCAATCGAAGATGACGGGGCTGACGATGAAAAAGTGAATCCCACGATGCTGGAGGATATG : 33261 241 : TyrLysSerIleCysGluSerIleLysAlaHisGlnHisAlaLeuLysTyrLeuArgLeu : 260 :!! !!!!:!: !!.!.|||:!!||||||||||||||||||:!!|||! :!! !!! ! HisGlyArgValArgHisSerValLysAlaHisGlnHisAlaIleLysSerVal***Ser 33260 : CACGGAAGAGTGCGCCACTCAGTTAAGGCACATCAGCACGCCATAAAGTCAGTATGATCG : 33201 261 : IleGluAsnSerTyrHisThr{T} >>>> Target Intron 3 >>>> {yr}Leu : 269 .!!..!||||||!:! !! !{ } 906 bp {!!}||| PheArgAsnSerPheAspHis{A}-+ +-{sp}Leu 33200 : TTTAGAAATTCTTTTGACCAC{G}tt.........................at{AC}CTG : 32268 270 : PheValSerMetGlyLeuLeuIleMetAlaIleSerValSerLeuLeuGluVal{Al} : 288 |||:!! !:!!|||:!!:!!!!:.!.|||.!!|||:!!!!!||||||..!|||{::} PheIleValValGlyMetValMetPheAlaPheSerIleThrLeuLeuArgVal{Se}-- 32267 : TTCATAGTAGTGGGAATGGTTATGTTCGCCTTCAGTATCACGCTGCTAAGGGTT{Ag}ac : 32209 289 : >>>> Target Intron 4 >>>> {a}AsnGlyLysAsnGlySerArgLysLeuVal : 298 181 bp {!} !!.! !:::|||! !||| !!! !||| ++{r}LeuAla***SerGlyLeuArg***TyrVal 32208 : .........................ag{T}CTCGCATGATCAGGTTTACGATAGTATGTA : 32000 299 : GlnAlaThrPheLeuPheAlaGlnLeuPheHisThrPheIleLeuThrValGlnGlyGln : 318 ...::: |||:::||| ||| ! ! !!:!:!!!||| ... SerSerCysPheIlePhePheLeuLeuThrLysPheValValPheThrLysCysAsnLeu 31999 : AGtagttgttttattttctttcttcttacgAAATTTGTCGTGTTCAcgaaatgcaattta : 31940 319 : PheValIleAsnGluLeuGlnAspValTyrGluSerIleTyrGluSerProTrpTyrThr : 338 ...:!!:!! !! !! ! :!! !! !!! !|||...:!! !!||||||! ! IleLeuLeuTyrLeuTyrPheProLeuLeuValArgArgTyrSerAlaThrTrpTyrLys 31939 : attcTACTATACTTGTATTTTCCGTTGCTCGTTCGCAGATACAGTGCAACGTGGTACAAG : 31880 339 : PheSerProArgIleArgSerLeuTyrValLeuSerLeuArgSerCysLeuAsnPhePro : 358 !!!!||||||! !:!!!!||||||! !|||:!!||||||!!! !!|||!.! ||| SerThrProArgThrGlnThrLeuTyrGlyLeuAlaLeuArgArgGlyLeuThrProPro 31879 : AGTACGCCGAGAACGCAAACTTTGTACGGGCTAGCTTTGAGAAGAGGCTTGACTCCACCG : 31820 359 : IleLeuThrAlaGlyGlyLeuIleValLeuAsnLeuGlnSerPheAlaGluIle : 376 :!:||||||||||||||||||||| !|||||||||:!!!!!|||||||||:!: ValLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGluVal 31819 : GTGCTCACAGCTGGAGGATTGATTTCGTTGAATCTGGAGACTTTTGCTGAGGTG : 31764 vulgar: AfOr112_1 83 376 . KQ414772.1 33964 31763 - 367 M 45 135 S 0 1 5 0 2 I 0 149 3 0 2 S 1 2 M 86 258 S 0 2 5 0 2 I 0 75 3 0 2 S 1 1 M 19 57 G 0 3 M 32 96 S 0 1 5 0 2 I 0 902 3 0 2 S 1 2 M 19 57 S 0 2 5 0 2 I 0 177 3 0 2 S 1 1 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 31764 33964 367 - . gene_id 3 ; sequence AfOr112_1 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 33829 33964 . - . KQ414772.1 exonerate:protein2genome:local exon 33829 33964 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 33827 33828 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 33676 33828 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 33676 33677 . - . intron_id 0 ; splice_site "ag" KQ414772.1 exonerate:protein2genome:local cds 33414 33675 . - . KQ414772.1 exonerate:protein2genome:local exon 33414 33675 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 33412 33413 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 33335 33413 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 33335 33336 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 33177 33334 . - . KQ414772.1 exonerate:protein2genome:local exon 33177 33334 . - . insertions 3 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 33175 33176 . - . intron_id 3 ; splice_site "TT" KQ414772.1 exonerate:protein2genome:local intron 32271 33176 . - . intron_id 3 KQ414772.1 exonerate:protein2genome:local splice3 32271 32272 . - . intron_id 2 ; splice_site "AT" KQ414772.1 exonerate:protein2genome:local cds 32210 32270 . - . KQ414772.1 exonerate:protein2genome:local exon 32210 32270 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 32208 32209 . - . intron_id 4 ; splice_site "ac" KQ414772.1 exonerate:protein2genome:local intron 32029 32209 . - . intron_id 4 KQ414772.1 exonerate:protein2genome:local splice3 32029 32030 . - . intron_id 3 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 31764 32028 . - . KQ414772.1 exonerate:protein2genome:local exon 31764 32028 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 31764 33964 367 - . alignment_id 3 ; Query AfOr112_1 ; Align 33965 84 135 ; Align 33674 130 258 ; Align 33334 217 57 ; Align 33274 236 96 ; Align 32269 269 57 ; Align 32028 289 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 323 Query range: 83 -> 288 Target range: 43003 -> 41706 84 : PheLeuAspGluThrLysLeuIleThrIleLeuAsnHisIlePheGluAspTrpAlaAla : 103 !:!! ! :!! !:!!|||! !|||:!!!!!.!. !! !|||.!.|||||| !.!! TyrArgThrLysLeuGlnLeuLysThrLeuPheGluCysThrPheAsnAspTrpIleThr 43003 : TATCGTACGAAATTACAGCTGAAAACACTATTCGAATGCACATTCAACGATTGGATAACG : 42946 104 : IleLysThrLysGluGluTyrGluIleMetTyrLysTyrSerArgArgGlyLeuPheIle : 123 ! !::! !!|||...||| !!:|||||| !!||||||:!!|||||||||||||||.!! SerArgProLysSerGluMetAspIleMetAsnLysTyrAlaArgArgGlyLeuPhePhe 42945 : AGCCGACCGAAAAGCGAAATGGACATTATGAACAAGTATGCGAGAAGAGGATTGTTTTTC : 42886 124 : ThrIleSerTyrPhe{L} >>>> Target Intron 1 >>>> {eu}HisIleGly : 132 !.! !! !||| !!{:} 132 bp {!!} ! ! ! AsnArgLeuTyrVal{V}++ ++{al}ThrGlyIle 42885 : AATCGTTTGTACGTC{G}gt.........................ag{TA}ACTGGAATA : 42727 133 : IleThrGluThrPheMetLeuMetTrpProMetValProProIleLeuAspIleIleMet : 152 ! ! |||.!..!.:!! !||| :!!|||! !:!!! !|||:!!!!::!: CysCysPheThrMetPheIleSerAlaProTyrIleProHisValTyrAspValMetLeu 42726 : TGTTGCTTCACAATGTTTATCTCTGCGCCTTATATACCGCATGTATATGATGTTATGTTA : 42667 153 : ProLeuAsnValSerArgLysArgIleLeuLeuTyrProAlaTyrPheTrpLeuAspAsp : 172 !! !|||! !||||||||| ! !!!!:!!||||||||||||!:! ! :!!|||.!. SerLysAsnGluSerArgLysLeuGlyPheIleTyrProAlaTyrTyrGlyValAspGln 42666 : TCGAAAAACGAGTCACGAAAGTTGGGTTTCATTTACCCTGCCTATTATGGCGTTGATCAA : 42607 173 : GluLysTyrTyrValLeuLeuLeuGlyHisMetIleIleThrIleLeuMetIleCysPhe : 192 !!:||||||||| !! !:!!:!!!.!||||||! ! ! ! !|||:!!:!:! !||| AspLysTyrTyrTyrTyrIleIleAlaHisMetThrSerGlyGlyLeuValValPhePhe 42606 : GACAAGTATTATTACTATATAATAGCTCACATGACATCTGGGGGCTTAGTGGTGTTTTTC : 42547 193 : IlePheCysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeu : 212 ! !||| !:!!||||||! !! !|||:!! !! !|||||||||||||||||||||||| ThrPheIleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeu 42546 : ACCTTTATCTCCTGCGACACGATTTACATGAATATCGTGCAACACGCGTGCGGATTGTTG : 42487 213 : AlaIleAla{Ly} >>>> Target Intron 2 >>>> {s}TyrArgPheLysAsn : 221 !|||:!!{ } 79 bp { }:!!||||||||| LeuIleSer{Gl}++ ++{y}HisArgPheLysTrp 42486 : TTGATTTCT{GG}gt.........................ag{C}CACCGTTTCAAGTGG : 42381 222 : ValCysLysAspLeuAsnAspLysGluAspHisAlaMetPro<->LeuGluLysIleLys : 240 !.! !:!!!!::!!..! ......::: ||| :!! !:!! !! ! AlaIleGluGluMetGlyGlyAsnAsnGluLysLeuAsnProThrMetLeuGluGlyIle 42380 : GCAATCGAAGAGATGGGTggtaacaatgaaaaattgaatcccACGATGCTAGAGGGTATA : 42321 241 : TyrLysSerIleCysGluSerIleLysAlaHisGlnHisAlaLeu{Ly} >>>> Targ : 256 :!!!:!!!!:!:|||:!!|||:!!||||||||||||||||||:!!{!!} HisArgArgValCysGlnSerValLysAlaHisGlnHisAlaIle{As}++ 42320 : CACAGAAGAGTGTGTCAATCGGTTAAGGCACATCAGCACGCCATA{AA}gt......... : 42269 257 : et Intron 3 >>>> {s}TyrLeuArgLeuIleGluAsnSerTyrHisThrTyrLeu : 269 468 bp {.}|||:!!..! !||||||.!.! !:!!|||||||||||| ++{n}TyrIleGluArgIleGluGluMetHisHisThrTyrLeu 42268 : ................ag{T}TACATTGAGAGGATTGAAGAAATGCACCATACATACCTG : 41766 270 : PheValSerMetGlyLeuLeuIleMetAlaIleSerValSerLeuLeuGluValAla : 288 |||:!! !:!! !:!!:!!:!!:!!|||.!!|||:!!!!!||||||..!|||::: PheIleValValLeuValValValLeuAlaPheSerIleThrLeuLeuArgValSer 41765 : TTCATAGTGGTGCTAGTGGTTGTACTGGCGTTCAGTATCACCCTACTAAGGGTTagt : 41707 vulgar: AfOr112_1 83 288 . KQ414772.1 43003 41706 - 323 M 45 135 S 0 1 5 0 2 I 0 128 3 0 2 S 1 2 M 86 258 S 0 2 5 0 2 I 0 75 3 0 2 S 1 1 M 19 57 G 0 3 M 20 60 S 0 2 5 0 2 I 0 464 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 41707 43003 323 - . gene_id 4 ; sequence AfOr112_1 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 42868 43003 . - . KQ414772.1 exonerate:protein2genome:local exon 42868 43003 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 42866 42867 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 42736 42867 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 42736 42737 . - . intron_id 0 ; splice_site "ag" KQ414772.1 exonerate:protein2genome:local cds 42474 42735 . - . KQ414772.1 exonerate:protein2genome:local exon 42474 42735 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 42472 42473 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 42395 42473 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 42395 42396 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 42272 42394 . - . KQ414772.1 exonerate:protein2genome:local exon 42272 42394 . - . insertions 3 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 42270 42271 . - . intron_id 3 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 41804 42271 . - . intron_id 3 KQ414772.1 exonerate:protein2genome:local splice3 41804 41805 . - . intron_id 2 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 41707 41803 . - . KQ414772.1 exonerate:protein2genome:local exon 41707 41803 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 41707 43003 323 - . alignment_id 4 ; Query AfOr112_1 ; Align 43004 84 135 ; Align 42734 130 258 ; Align 42394 217 57 ; Align 42334 236 60 ; Align 41803 257 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 293 Query range: 129 -> 216 Target range: 20580 -> 20319 130 : HisIleGlyIleThrGluThrPheMetLeuMetTrpProMetValProProIleLeuAsp : 149 |||:!: !:!! !!! !.!!.!..!.||| !|||.!.!.!||| !||||||||| HisLeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAsp 20580 : CATTTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGAC : 20523 150 : IleIleMetProLeuAsnValSerArgLysArgIleLeuLeuTyrProAlaTyrPheTrp : 169 ||| ! !||||||||| !!!!|||||||||:!:!!!:!!||||||||||||!:!||| IleTyrAlaProLeuAsnLysThrArgLysArgValPheValTyrProAlaTyrTyrTrp 20522 : ATTTACGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGG : 20463 170 : LeuAspAspGluLysTyrTyrValLeuLeuLeuGlyHisMetIleIleThrIleLeuMet : 189 :!!||| !|||:!!||||||:!!:!!:!!:!! !|||!!:!!:.!!..!:!::!!||| MetAspProGluGlnTyrTyrMetIleMetIleIleHisIleMetPheValValIleMet 20462 : ATGGATCCTGAGCAATACTACATGATAATGATAATACACATAATGTTCGTGGTGATCATG : 20403 190 : IleCysPheIlePheCysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCys : 209 :!!||| !!||||||||||||||||||||||||||||||||||||||||||||||||||| ValCysValIlePheCysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCys 20402 : GTCTGTGTCATATTCTGTGCTTGCGACATGAACTACGTGTACGCTGTGCAGCACGCATGC : 20343 210 : GlyLeuLeuAlaIleAlaLys : 216 ||||||||||||:!!.!!!:! GlyLeuLeuAlaValThrArg 20342 : GGCTTATTGGCTGTCACCAGG : 20320 vulgar: AfOr112_1 129 216 . KQ414772.1 20580 20319 - 293 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20320 20580 293 - . gene_id 5 ; sequence AfOr112_1 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20320 20580 . - . KQ414772.1 exonerate:protein2genome:local exon 20320 20580 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20320 20580 293 - . alignment_id 5 ; Query AfOr112_1 ; Align 20581 130 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 281 Query range: 142 -> 288 Target range: 24398 -> 23517 143 : MetValProProIleLeuAspIleIleMetProLeuAsnValSerArgLysArgIleLeu : 162 !!:..!|||! !:!!||||||:!!||| !||| !|||! !|||||| ! ! !!!! IleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValGlyPhe 24398 : ATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTGGGCTTC : 24341 163 : LeuTyrProAlaTyrPheTrpLeuAspAspGluLysTyrTyrValLeuLeuLeuGlyHis : 182 :!!||||||||| !!!:! ! :!!|||!!:|||:!!:!!||| !! !|||:!!|||||| IleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyrTyrTyrLeuMetGlyHis 24340 : ATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTACTACTATCTGATGGGTCAC : 24281 183 : MetIleIleThrIleLeuMetIleCysPheIlePheCysAlaCysAspMetAsnTyrVal : 202 |||:!! !..!||| !:!::!:! !|||:!!!:! !:!!||||||! !! !|||:!! MetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMet 24280 : ATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATCTACATG : 24221 203 : TyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla{Ly} >>>> Target Int : 216 !! !|||||||||||||||||||||||| !:!!:!!{ } 355 b AsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSer{Gl}++ 24220 : AATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCT{GG}gt............... : 24175 217 : ron 1 >>>> {s}TyrArgPheLysAsnValCysLysAspLeuAsnAspLysGluAsp : 231 p {!}:!!||||||||| !.! ! !! !!!...!!!.! ! ! ++{y}HisArgPheLysTrpAlaIleAlaAlaGluLysSerAsnAlaLys 24174 : ..........ag{A}CATCGCTTCAAGTGGGCAATTGCAGCAGAGAAGAGTAACGCGAAA : 23779 232 : HisAlaMetProLeuGluLysIleLysTyrLysSerIleCysGluSerIleLysAlaHis : 251 ||||||.!. !:!!|||:!! !||| !!!!:!!|||.!.|||:!!||||||||| HisAlaPheValMetGluGlu---AlaTyrAlaArgValCysHisSerValLysAlaHis 23778 : CATGCCTTCGTGATGGAAGAA---GCGTATGCAAGGGTATGCCACTCGGTTAAGGCACAC : 23722 252 : GlnHisAlaLeu{Ly} >>>> Target Intron 2 >>>> {s}TyrLeuArgLeu : 260 |||||||||:!!{!!} 91 bp {.}|||:!!! ! ! GlnHisAlaIle{As}++ ++{n}TyrIleThrGlu 23721 : CAGCACGCCATA{AA}gt.........................ag{T}TATATTACAGAA : 23604 261 : IleGluAsnSerTyrHisThrTyrLeuPheValSerMetGlyLeuLeuIleMetAlaIle : 280 ||||||.!. !:!! !||||||||||||:!!:!!:!!|||:!!:!!!!:|||:!!.!! IleGluGlnValHisGlyThrTyrLeuPheIleAlaValGlyMetValMetMetSerPhe 23603 : ATTGAACAAGTTCATGGCACGTACCTCTTCATAGCAGTGGGAATGGTTATGATGTCATTC : 23544 281 : SerValSerLeuLeuGluValAla : 288 |||:!!!!!|||:!!..!|||::! SerIleThrLeuValArgValSer 23543 : AGTATCACGTTAGTCAGGGTTAGT : 23518 vulgar: AfOr112_1 142 288 . KQ414772.1 24398 23517 - 281 M 73 219 S 0 2 5 0 2 I 0 351 3 0 2 S 1 1 M 22 66 G 1 0 M 16 48 S 0 2 5 0 2 I 0 87 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 23518 24398 281 - . gene_id 6 ; sequence AfOr112_1 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 24178 24398 . - . KQ414772.1 exonerate:protein2genome:local exon 24178 24398 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 24176 24177 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 23823 24177 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 23823 23824 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 23706 23822 . - . KQ414772.1 exonerate:protein2genome:local exon 23706 23822 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local splice5 23704 23705 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 23615 23705 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 23615 23616 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 23518 23614 . - . KQ414772.1 exonerate:protein2genome:local exon 23518 23614 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 23518 24398 281 - . alignment_id 6 ; Query AfOr112_1 ; Align 24399 143 219 ; Align 23822 217 66 ; Align 23756 240 48 ; Align 23614 257 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 233 Query range: 142 -> 268 Target range: 37991 -> 37538 143 : MetValProProIleLeuAspIleIleMetProLeuAsnValSerArgLysArgIleLeu : 162 !!:..!|||! !:!!||||||:!!||| ||| !|||! !|||||| ! ! !!!! IleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValAspPhe 37991 : ATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTC : 37934 163 : LeuTyrProAlaTyrPheTrpLeuAspAspGluLysTyrTyrValLeuLeuLeuGlyHis : 182 :!!||||||||||||!:! ! ||||||!!:|||:!!:!!||| !:!!|||:!!|||||| IleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHis 37933 : ATTTATCCTGCATACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCAC : 37874 183 : MetIleIleThrIleLeuMetIleCysPheIlePheCysAlaCysAspMetAsnTyrVal : 202 |||:!! !..!||| !:!::!:! !|||:!:!:! !:!!||||||! !! !|||:!! MetLeuCysValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMet 37873 : ATGCTCTGCGTGATAACTGTAGTGTTTTTCGTGTACATCTCCTGTGACACGATCTACATG : 37814 203 : TyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla{Ly} >>>> Target Int : 216 ! !|||||||||||||||||||||||| !:!!:!!{ } 75 bp SerIleValGlnHisAlaCysGlyLeuLeuAsnValSer{Gl}++ 37813 : AGCATCGTTCAACACGCGTGCGGATTACTGAACGTCTCT{GG}gt............... : 37768 217 : ron 1 >>>> {s}TyrArgPheLysAsnValCysLysAspLeuAsnAspLysGluAsp : 231 {!}:!! !!|||||| !.! :!! !:!!! ! !|||.!.!!: ++{y}HisCysPheLysTrpAlaValGluThrValIleThrLysAsnGlu 37767 : ..........ag{G}CATTGCTTCAAGTGGGCAGTGGAAACTGTGATTACCAAGAACGAG : 37652 232 : HisAlaMetProLeuGluLysIleLysTyrLysSerIleCysGluSerIleLysAlaHis : 251 ! ! !! !! ! ! !! !|||!:!!.!:!: !!.!.||||||||||||||| LysMetHisThrGluValAspAspThrTyrArgLysValArgHisSerIleLysAlaHis 37651 : AAGATGCACACCGAAGTGGACGACACGTATAGAAAAGTGCGCCATTCGATCAAGGCTCAT : 37592 252 : GlnHisAlaLeuLysTyrLeuArgLeuIleGluAsnSerTyrHisThrTyr : 268 |||||||||:!!:!!!! :!!||||||......|||...::: !!:! GlnHisAlaMetGlu***ValArgLeuPheArgAsnLysPheAspLeuPhe 37591 : CAACACGCTATGGAGTAAGTAcgattatttagaaataaattcgacCTGTTT : 37539 vulgar: AfOr112_1 142 268 . KQ414772.1 37991 37538 - 233 M 73 219 S 0 2 5 0 2 I 0 71 3 0 2 S 1 1 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37539 37991 233 - . gene_id 7 ; sequence AfOr112_1 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 37771 37991 . - . KQ414772.1 exonerate:protein2genome:local exon 37771 37991 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 37769 37770 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 37696 37770 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 37696 37697 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 37539 37695 . - . KQ414772.1 exonerate:protein2genome:local exon 37539 37695 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 37539 37991 233 - . alignment_id 7 ; Query AfOr112_1 ; Align 37992 143 219 ; Align 37695 217 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 191 Query range: 142 -> 215 Target range: 29577 -> 29358 143 : MetValProProIleLeuAspIleIleMetProLeuAsnValSerArgLysArgIleLeu : 162 !!:..!|||! !:!!||||||:!!||| !||| !|||! !|||||| ! ! !!!! IleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValGlyPhe 29577 : ATAACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTGGGCTTC : 29520 163 : LeuTyrProAlaTyrPheTrpLeuAspAspGluLysTyrTyrValLeuLeuLeuGlyHis : 182 :!!||||||||||||!:! ! ||||||!!:|||:!!:!!||| !! !|||:!!|||||| IleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrTyrLeuMetGlyHis 29519 : ATTTATCCTGCATACTACGGTCTTGACGAAGAGGAGCATTACTACTATCTGATGGGTCAC : 29460 183 : MetIleIleThrIleLeuMetIleCysPheIlePheCysAlaCysAspMetAsnTyrVal : 202 |||:!! !..!||| !:!::!:! !|||:!!!:! !:!!||||||! !! !|||:!! MetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMet 29459 : ATGCTTTCCGTGATAACCGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATCTATATG : 29400 203 : TyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla : 215 !!!.!|||||||||||||||||||||||| !:!!:!! AsnValValGlnHisAlaCysGlyLeuLeuAsnValSer 29399 : AATGTCGTGCAACACGCGTGTGGATTATTGAACGTCTCT : 29359 vulgar: AfOr112_1 142 215 . KQ414772.1 29577 29358 - 191 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29359 29577 191 - . gene_id 8 ; sequence AfOr112_1 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29359 29577 . - . KQ414772.1 exonerate:protein2genome:local exon 29359 29577 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 29359 29577 191 - . alignment_id 8 ; Query AfOr112_1 ; Align 29578 143 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 187 Query range: 299 -> 388 Target range: 45128 -> 44733 300 : AlaThrPheLeuPheAlaGlnLeuPheHisThrPheIleLeuThrValGlnGlyGlnPhe : 319 ..!|||||||||.!!|||||| ! ! |||! !.!..!!||||||:!!|||||||||||| CysThrPheLeuIleAlaGlnThrValHisMetLeuPheLeuThrIleGlnGlyGlnPhe 45128 : TGCACGTTCCTGATCGCACAAACTGTACACATGCTGTTTTTGACGATTCAGGGACAGTTC : 45071 320 : ValIleAsnGluLeuGlnAspValTyrGluSerIleTyr >>>> Target Intron : 333 ||||||:!!..!! !.!. ||||||.!. ! ! 30 bp ValIleAspSerHisAspThrValTyrAsnValCysMet++ 45070 : GTGATCGATTCGCATGATACAGTGTACAATGTGTGTATGgt................... : 45027 334 : 1 >>>> GluSerProTrpTyrThrPheSerProArgIleArgSerLeuTyrValLeuS : 350 |||:!! !||||||! !.!. !!|||!:!:!!!:!! !||| !!|||:!!: +-GluAlaIleTrpTyrLysMetProProLysLeuGlnLeuLeuAspValValA 45026 : ......acGAGGCAATTTGGTATAAGATGCCACCTAAACTTCAGTTGCTAGACGTTGTAG : 44948 351 : erLeuArgSerCysLeuAsnPheProIleLeuThrAlaGlyGlyLeuIleValLeuAsnL : 370 !!||||||!.! !!|||!.! !||||||||||||||||||||||||!!: !|||:!!| laLeuArgLysSerLeuThrProProIleLeuThrAlaGlyGlyLeuMetArgLeuAspL 44947 : CGCTTAGAAAAAGCCTAACTCCTCCTATACTGACGGCGGGAGGGTTGATGCGGTTAGATT : 44888 371 : euGlnSerPheAlaGlu >>>> Target Intron 2 >>>> IleIleLysAlaAl : 380 ||.!.|||||||||:!! 98 bp ::::!:||||||.. euAsnSerPheAlaGln++ ++LeuLeuLysAlaCy 44887 : TGAATTCTTTCGCACAGgt.........................agctgCTGAAAGCTTG : 44760 381 : aValSerTyrTyrThrValMetGln : 388 !|||||||||||||||!.!:!!!:! sValSerTyrTyrThrAlaLeuArg 44759 : CGTCTCGTATTATACGGCACTGCGA : 44734 vulgar: AfOr112_1 299 388 . KQ414772.1 45128 44733 - 187 M 33 99 5 0 2 I 0 26 3 0 2 M 43 129 5 0 2 I 0 94 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 44734 45128 187 - . gene_id 9 ; sequence AfOr112_1 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 45030 45128 . - . KQ414772.1 exonerate:protein2genome:local exon 45030 45128 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 45028 45029 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 45000 45029 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 45000 45001 . - . intron_id 0 ; splice_site "AC" KQ414772.1 exonerate:protein2genome:local cds 44871 44999 . - . KQ414772.1 exonerate:protein2genome:local exon 44871 44999 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 44869 44870 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 44773 44870 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 44773 44774 . - . intron_id 1 ; splice_site "ag" KQ414772.1 exonerate:protein2genome:local cds 44734 44772 . - . KQ414772.1 exonerate:protein2genome:local exon 44734 44772 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 44734 45128 187 - . alignment_id 9 ; Query AfOr112_1 ; Align 45129 300 99 ; Align 45000 333 129 ; Align 44773 376 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 159 Query range: 213 -> 376 Target range: 17732 -> 16644 214 : IleAlaLysTyrArgPheLysAsnValCysLysAspLeuAsnAsp<->LysGluAspHis : 232 :!! !!:!||||||||||||||| ! !:::!!: !|||..! |||! ! ! :!! ValArgArgTyrArgPheLysAsnSerIleArgGluAspAsnSerValLysGlyLysTyr 17732 : GTTCGCAGATACCGCTTCAAGAATTCAATTCGCGAGGACAATAGCGTGAAGGGGAAGTAT : 17675 233 : AlaMetProLeuGluLysIleLysTyrLysSerIleCysGluSerIleLysAlaHisGln : 252 ! ! !! ! !||| !||||||!:! ||| ||||||:!!!.!|||||| PheAspHisTrpThrLysGluAlaTyrLysAsnAlaCysPheSerIleGlnGlyHisGln 17674 : TTCGACCACTGGACGAAAGAGGCGTACAAGAACGCGTGTTTCTCCATTCAGGGACATCAA : 17615 253 : HisAlaLeuLysTyrLeuArgLeuIleGluAsnSerTyrHisThrTyrLeu >>>> Ta : 270 !.!|||:!!|||! :!! ! !||| ...:::... ArgAlaIleLysSerValPheThrIlePheValCysLeuPheValPhePhe++ 17614 : CGTGCTATAAAGTCAGTATTCACGAtctttgtttgtttgtttgtttttttcgt....... : 17559 271 : rget Intron 1 >>>> PheValSerMetGlyLeuLeuIleMetAlaIleSerValS : 283 194 bp !:!:!!||| !!|||::: ...|||::: +-TyrIleSerArgCysLeuIleCysGlyAsnPheSerLeuP 17558 : ..................acTACATTTCGCGTTGTTTAAtctgtggaaatttttcactgt : 17328 284 : erLeuLeuGluValAlaAsnGlyLysAsnGlySerArgLysLeuValGlnAlaThrPheL : 303 !:!!:!!::!!....! ! !! !! ! ! ! ! ! ! ..!!:!||| heSerAsnGlnLeuSerThrSerAspPheAspIleAspPheTyrArgTyrCysSerPheT 17327 : tttcaaATCAGCTGAGTACGTCGGATTTCGACATAGACTTCTACAGATATTGCAGTTTTA : 17268 304 : euPheAlaGlnLeuPheHisThrPheIleLeuThrValGlnGlyGlnPheValIleAsnG : 323 !!!...!||||||.!.||| !|||:!!:!!! !:!!|||||||||||||||:!::!!. hrLeuCysGlnLeuMetHisLeuPheValIleMetLeuGlnGlyGlnPheValLeuAspS 17267 : CGTTGTGTCAACTGATGCACCTGTTCGTTATCATGCTTCAGGGACAGTTCGTGCTGGATT : 17208 324 : luLeuGln >>>> Target Intron 2 >>>> AspValTyrGluSerIleTyrGl : 333 .!! !:!! 402 bp ||| ! ! |||! !||||| erCysGlu-- +-AspAsnGluThrSerArgTyrGl 17207 : CGTGCGAGag.........................atGATAATGAAACTTCCAGATACGA : 16776 334 : uSerProTrpTyrThrPheSerProArgIleArgSerLeuTyrValLeuSerLeuArgSe : 353 |||| !||||||||| !||| !!!:!! !!:!:!!|||||||||:!!:!!||||||!! uSerLeuTrpTyrThrSerSerSerLysThrGlnAlaLeuTyrValValAlaLeuArgAr 16775 : ATCATTATGGTACACAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCGTTACGAAG : 16716 354 : rCysLeuAsnPheProIleLeuThrAlaGlyGlyLeuIleValLeuAsnLeuGlnSerPh : 373 ! !|||!.. ! !! !||||||||||||||||||:!: !||||||:!!|||||||| gAsnLeuThrProThrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMetGlnSerPh 16715 : AAACCTAACACCTACCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATGCAAAGCTT : 16656 374 : eAlaGluIle : 376 |||||||:!! eAlaGluVal 16655 : CGCAGAGGTA : 16645 vulgar: AfOr112_1 213 376 . KQ414772.1 17732 16644 - 159 M 15 45 G 0 3 M 41 123 5 0 2 I 0 190 3 0 2 M 56 168 5 0 2 I 0 398 3 0 2 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 16645 17732 159 - . gene_id 10 ; sequence AfOr112_1 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 17562 17732 . - . KQ414772.1 exonerate:protein2genome:local exon 17562 17732 . - . insertions 3 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 17560 17561 . - . intron_id 1 ; splice_site "gt" KQ414772.1 exonerate:protein2genome:local intron 17368 17561 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 17368 17369 . - . intron_id 0 ; splice_site "AC" KQ414772.1 exonerate:protein2genome:local cds 17200 17367 . - . KQ414772.1 exonerate:protein2genome:local exon 17200 17367 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 17198 17199 . - . intron_id 2 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local intron 16798 17199 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 16798 16799 . - . intron_id 1 ; splice_site "AT" KQ414772.1 exonerate:protein2genome:local cds 16645 16797 . - . KQ414772.1 exonerate:protein2genome:local exon 16645 16797 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 16645 17732 159 - . alignment_id 10 ; Query AfOr112_1 ; Align 17733 214 45 ; Align 17685 229 123 ; Align 17368 270 168 ; Align 16798 326 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 148 Query range: 313 -> 376 Target range: 37097 -> 36908 314 : ThrValGlnGlyGlnPheValIleAsnGluLeuGlnAspValTyrGluSerIleTyrGlu : 333 ...::: .!!....!!||| !.....!!!!|||!!::!!!:!! !!! !|||... AlaIleIleSerSerIleValProArgArgPheGlnGluLeuPheValArgArgTyrSer 37097 : gcaattATCAGTTCTATCGTACCTCGAAGATTTCAGGAGTTGTTCGTTCGCAGATATAGC : 37040 334 : SerProTrpTyrThrPheSerProArgIleArgSerLeuTyrValLeuSerLeuArgSer : 353 :!! !||||||!.! !|||||||||! !:!!!!||||||||||||:!!||||||!!! AlaLysTrpTyrAsnSerSerProArgThrGlnThrLeuTyrValLeuAlaLeuArgArg 37039 : GCAAAATGGTACAACAGTTCGCCGAGAACGCAAACTCTGTACGTGCTAGCTTTGAGGAGG : 36980 354 : CysLeuAsnPheProIleLeuThrAlaGlyGlyLeuIleValLeuAsnLeuGlnSerPhe : 373 !!|||!.! |||:!:||||||||||||||||||||| !|||||||||:!!!!!||| SerLeuThrProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPhe 36979 : AGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGATTTCCTTGAATTTGGAGACTTTT : 36920 374 : AlaGluIle : 376 ||||||::: AlaGluVal 36919 : GCCGaggta : 36909 vulgar: AfOr112_1 313 376 . KQ414772.1 37097 36908 - 148 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 36909 37097 148 - . gene_id 11 ; sequence AfOr112_1 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 36909 37097 . - . KQ414772.1 exonerate:protein2genome:local exon 36909 37097 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 36909 37097 148 - . alignment_id 11 ; Query AfOr112_1 ; Align 37098 314 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 148 Query range: 313 -> 376 Target range: 35663 -> 35474 314 : ThrValGlnGlyGlnPheValIleAsnGluLeuGlnAspValTyrGluSerIleTyrGlu : 333 ...::: .!!....!!||| !.....!!!!|||!!::!!!:!! !!! !|||... AlaIleIleSerSerIleValProArgArgPheGlnGluLeuPheValArgArgTyrSer 35663 : gcaattATCAGTTCTATCGTACCTCGAAGATTTCAGGAGTTGTTCGTTCGCAGATATAGC : 35606 334 : SerProTrpTyrThrPheSerProArgIleArgSerLeuTyrValLeuSerLeuArgSer : 353 :!! !||||||!.! !|||||||||! !:!!!!||||||||||||:!!||||||!!! AlaLysTrpTyrAsnSerSerProArgThrGlnThrLeuTyrValLeuAlaLeuArgArg 35605 : GCAAAATGGTACAACAGTTCGCCGAGAACGCAAACTCTGTACGTGCTAGCTTTGAGGAGG : 35546 354 : CysLeuAsnPheProIleLeuThrAlaGlyGlyLeuIleValLeuAsnLeuGlnSerPhe : 373 !!|||!.! |||:!:||||||||||||||||||||| !|||||||||:!!!!!||| SerLeuThrProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPhe 35545 : AGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGATTTCCTTGAATTTGGAGACTTTT : 35486 374 : AlaGluIle : 376 ||||||:!! AlaGluVal 35485 : GCCGAGGTA : 35475 vulgar: AfOr112_1 313 376 . KQ414772.1 35663 35474 - 148 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 35475 35663 148 - . gene_id 12 ; sequence AfOr112_1 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 35475 35663 . - . KQ414772.1 exonerate:protein2genome:local exon 35475 35663 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 35475 35663 148 - . alignment_id 12 ; Query AfOr112_1 ; Align 35664 314 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 146 Query range: 154 -> 215 Target range: 17988 -> 17805 155 : AsnValSerArgLysArgIleLeuLeuTyrProAlaTyrPheTrpLeuAspAspGluLys : 174 |||:!!!!!! !!.. ! !!!!:!! |||!.!|||!:!!:::!!|||!!:! !:!! AsnIleThrProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGluValGlu 17988 : AATATAACGCCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAA : 17931 175 : TyrTyrValLeuLeuLeuGlyHisMetIleIleThrIleLeuMetIleCysPheIlePhe : 194 |||||| !! !:!!:!! !||| ! !|||||||||!!::!! ! :!:!:! TyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyr 17930 : TACTATTATTACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTAC : 17871 195 : CysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle : 214 ||||||||||||! !:!|||:!! !|||||||||.!!|||||||||!!!|||:!: CysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaVal 17870 : TGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTG : 17811 215 : Ala : 215 ||| Ala 17810 : GCC : 17806 vulgar: AfOr112_1 154 215 . KQ414772.1 17988 17805 - 146 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17806 17988 146 - . gene_id 13 ; sequence AfOr112_1 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17806 17988 . - . KQ414772.1 exonerate:protein2genome:local exon 17806 17988 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17806 17988 146 - . alignment_id 13 ; Query AfOr112_1 ; Align 17989 155 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 331 -> 376 Target range: 41380 -> 41245 332 : TyrGluSerProTrpTyrThrPheSerProArgIleArgSerLeuTyrValLeuSerLeu : 351 |||!!::!! !||||||!.! !!!!||||||! !:!!!!||||||:!!|||:!!||| TyrAspAlaValTrpTyrAsnSerThrProArgThrGlnThrLeuTyrMetLeuAlaLeu 41380 : TACGATGCAGTATGGTACAACAGTACGCCAAGAACGCAAACTTTGTACATGCTAGCTTTG : 41323 352 : ArgSerCysLeuAsnPheProIleLeuThrAlaGlyGlyLeuIleValLeuAsnLeuGln : 371 |||!!! !|||!.! |||:!:||||||||||||||||||||| |||||||||::: ArgArgThrLeuThrProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGlu 41322 : AGGAGGACTTTAACTCCACCACTGCTCACTGCAGGAGGACtgatttcgttgaatttggaa : 41263 372 : SerPheAlaGluIle : 376 :::|||::!:!!:!! ThrPheSerLysVal 41262 : actttttcGAAGGTA : 41246 vulgar: AfOr112_1 331 376 . KQ414772.1 41380 41245 - 130 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 41246 41380 130 - . gene_id 14 ; sequence AfOr112_1 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 41246 41380 . - . KQ414772.1 exonerate:protein2genome:local exon 41246 41380 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 41246 41380 130 - . alignment_id 14 ; Query AfOr112_1 ; Align 41381 332 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 320 -> 376 Target range: 28149 -> 27981 321 : IleAsnGluLeuGlnAspValTyrGluSerIleTyrGluSerProTrpTyrThrPheSer : 340 :!!.!..!.:!!||| ! :!!!:!! !!! !! !! :!! !!||||||!.! !!!! LeuGlnAsnIleGlnLysLeuPheValArgArgCysAlaAlaThrTrpTyrAsnSerThr 28149 : CTTCAAAACATTCAGAAGTTGTTCGTTCGCAGATGCGCTGCAACATGGTACAACAGTACA : 28092 341 : ProArgIleArgSerLeuTyrValLeuSerLeuArgSerCysLeuAsnPheProIleLeu : 360 !!|||! !:!:!!||||||:!!|||:!!||||||!!! !|||!.. |||:!::!! SerArgThrGlnAlaLeuTyrMetLeuAlaLeuArgArgAsnLeuThrProProLeuIle 28091 : TCTAGAACGCAAGCTTTGTACATGCTAGCTTTGAGAAGGAACTTGACACCACCACTGATC : 28032 361 : ThrAlaGlyGlyLeuIleValLeuAsnLeuGlnSerPheAlaGluIle : 376 |||||||||||||||||| !|||||||||:!!!!!|||||||||:!! ThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGluVal 28031 : ACCGCCGGAGGACTGATTTCCTTGAATTTGGAGACCTTCGCGGAGGTA : 27982 vulgar: AfOr112_1 320 376 . KQ414772.1 28149 27981 - 120 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 27982 28149 120 - . gene_id 15 ; sequence AfOr112_1 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 27982 28149 . - . KQ414772.1 exonerate:protein2genome:local exon 27982 28149 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 27982 28149 120 - . alignment_id 15 ; Query AfOr112_1 ; Align 28150 321 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 213 -> 288 Target range: 28709 -> 28397 214 : IleAlaLysTyrArgPheLysAsnValCysLysAspLeuAsnAspLysGluAspHisAla : 233 ::: ::!:!!||||||||| !.! ! !! !!!...!!!.! ! ! |||||| ValHisArgHisArgPheLysTrpAlaIleAlaAlaGluLysSerAsnAlaLysHisAla 28709 : gttcacaGACATCGCTTCAAGTGGGCAATTGCAGCAGAGAAGAGTAACGCGAAGCATGCC : 28652 234 : MetProLeuGluLysIleLysTyrLysSerIleCysGluSerIleLysAlaHisGlnHis : 253 .!. !:!!|||:!! !||| !!!!:!!|||.!.|||:!!||||||||||||||| PheMetMetGluGlu---AlaTyrAlaArgValCysHisSerValLysAlaHisGlnHis 28651 : TTCATGATGGAAGAA---GCGTATGCAAGGGTATGCCACTCGGTTAAGGCACACCAGCAC : 28595 254 : AlaLeu{Ly} >>>> Target Intron 1 >>>> {s}TyrLeuArgLeuIleGlu : 262 |||:!!{!!} 90 bp {.}|||:!!! |||||| AlaIle{As}++ ++{n}TyrIleThrGluIleGlu 28594 : GCCATA{AA}gt.........................ag{T}TATATTAcagaaattgaa : 28478 263 : AsnSerTyrHisThrTyrLeuPheValSerMetGlyLeuLeuIleMetAlaIleSerVal : 282 ... ::! !||||||||||||:!!:!!:!!|||:!!:!!!!:|||:!!.!!|||:!! GlnIleHisGlyThrTyrLeuPheIleAlaValGlyMetIleMetMetSerPheSerIle 28477 : caaattcaCGGCACGTACCTCTTCATAGCAGTGGGAATGATTATGATGTCATTCAGTATC : 28418 283 : SerLeuLeuGluValAla : 288 !!!|||:!!..!|||::! ThrLeuValArgValSer 28417 : ACGCTAGTCAGGGTTAGT : 28398 vulgar: AfOr112_1 213 288 . KQ414772.1 28709 28397 - 112 M 25 75 G 1 0 M 16 48 S 0 2 5 0 2 I 0 86 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 28398 28709 112 - . gene_id 16 ; sequence AfOr112_1 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 28585 28709 . - . KQ414772.1 exonerate:protein2genome:local exon 28585 28709 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local splice5 28583 28584 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 28495 28584 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 28495 28496 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 28398 28494 . - . KQ414772.1 exonerate:protein2genome:local exon 28398 28494 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 28398 28709 112 - . alignment_id 16 ; Query AfOr112_1 ; Align 28710 214 75 ; Align 28635 240 48 ; Align 28494 257 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 463 Query range: 118 -> 388 Target range: 14181 -> 12388 119 : ValPhePheIleLeuIleTyrValValAsnAlaTyrPheCysSerIleLeuPheLeuLeu : 138 ..!!:!.!!:!! ! !! :!!||||||||| ! !!||| !|||||||||:!! ! ThrTyrIleValLysTyrSerIleValAsnAlaIleValCysValIleLeuPheValThr 14181 : ACGTACATTGTCAAATATTCGATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGACC : 14124 139 : LeuProPheThrProIleLeuLeuAspIlePheIleProLeuAsnGluSerArgProArg : 158 !||| ! |||||| !:!!|||||||||!!.:!!||| !|||||||||||| ! ! ThrProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspVal 14123 : ACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTA : 14064 159 : ValGlnMetTyrProAlaTyrTyrTyrIleGluAsnGluAlaAspTyrTyrTyrProIle : 178 !.! ! !!:|||||||||||||||!:!! !!!: ||| ! ! ||| !! !||| AlaTyrIleTyrProAlaTyrTyrPheThrAsp---GluHisLysTyrAspValTyrIle 14063 : GCGTACATTTACCCGGCCTATTATTTCACCGAC---GAGCATAAGTACGACGTGTACATA : 14007 179 : LeuIlePheSerIleValSerLeuLeuThrAlaMetCysValPheIleAlaThrAspThr : 198 :!!! !! ! ! !:!!|||..!!.!.!.! !|||!:!:!!||| !|||||| IleThrHisMetAlaSerValIleLeuValValPheTyrValTyrValAlaCysAspThr 14006 : ATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACC : 13947 199 : MetLeuIleTyrIleValGlnHisAlaCysGlyLeuLeuAlaLeuAla{Gl} >>>> T : 215 ! ! !||||||:!!|||||||||!.!|||||||||||||||:!!:!!{||} SerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSer{Gl}++ 13946 : AGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCC{GG}gt...... : 13892 216 : arget Intron 1 >>>> {y}HisArgPheArgAsnSerLeuAsnAspLeuTyrSer : 227 265 bp {|}:!!|||!:!!:! !:!!:!! !!:|||! !||| ++{y}TyrArgTyrLysCysAlaIleValGluLeuSerSer 13891 : ...................ag{A}TATCGTTACAAATGTGCGATCGTGGAATTGTCCAGT : 13595 228 : SerArgLysAspSerLysValAspGlyLysIleTyrArgArgLeuCysTyrAlaIleLys : 247 !!!:!!:!:!!||| ..!.!.! !:!!||||||||||||:!!|||:!!:!!|||:!! ArgLysArgAsnSerValThrGlnAspGluIleTyrArgArgValCysHisSerIleGln 13594 : CGGAAAAGGAACAGTGTCACGCAGGATGAAATTTATAGAAGAGTGTGTCATTCGATTCAA : 13535 248 : ThrHisLysArgAlaLeuAlaTyrLeuAlaGluIleGluAspPheTyrSerValAsnIle : 267 !|||:!!!.!|||:!! ! ::: ::: :::|||::: GlyHisGlnHisAlaIleLysSerValLeuLysLysIleArgGlnIleValLeuAsnVal 13534 : GGACACCAGCATGCTATAAAGtcggtattaaaaaagatacgtcaaattgttttaaatgtt : 13475 268 : PheMetGlnValGlyAlaSerIle<->LeuCys{Le} >>>> Target Intron 2 : 278 .!! :!!..!::!! !:!! ||| !!{! } 578 bp LeuCysPheLeuSerSerMetLeuGlnLeuArg{Se}++ 13474 : CTTTGCTTTTTGTCTAGCATGTTACAATTGCGC{TC}gt..................... : 13435 279 : >>>> {u}ThrValThrMetMetLysIleAlaThrIleThrTrpSerMetGluThrAsn : 295 {!}|||:!!:!! !! :!!:!::!!!.! ! !:! !||| ! ! ++{r}ThrIleSerTrpLysGlnValSerAsnSerGluIleAsnAlaGluPheAla 13434 : ....ag{A}ACAATTTCTTGGAAACAGGTGTCGAACTCGGAGATTAATGCGGAGTTTGCC : 12810 296 : GlnTyrTyrGlyTyrValIleAlaGlnValValHisIlePhePheLeuThrAlaGlnGly : 315 :!! !!! ! !!:!:!!:!: !|||:!!|||||||||.!!!:!|||||| !|||||| LysAspCysThrPheIleValIleGlnLeuValHisIleLeuTyrLeuThrLeuGlnGly 12809 : AAGGATTGCACATTTATCGTGATTCAATTGGTACACATACTTTACCTAACTCTTCAAGGA : 12750 316 : GlnPheValIleAspSerHisGluAsnValTyrTrpAsp{Me} >>>> Target Int : 329 |||||||||||||||:!!:!!|||.!.:!!!:! ...{!!} 62 bp GlnPheValIleAspAlaAsnGluGluIlePheGluSer{Il}++ 12749 : CAATTCGTGATCGACGCGAACGAGGAAATCTTCGAATCG{AT}gt............... : 12704 330 : ron 3 >>>> {t}TyrGluProTyrTrpTyrAsnLeuGlnSerLysMetGlnAlaMet : 344 {:}|||... !!! ||||||||| !.!.!.!!:!! !|||:!!:!! ++{e}TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeu 12703 : ..........ag{A}TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTG : 12601 345 : PheValLeuIleLeuArgArgAsnLeuAsnProProLeuLeuThrAlaGlyGlyLeuVal : 364 ||||||||| ||||||!.! !|||::! !!|||! !:!!|||||||||||||||:!! PheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIle 12600 : TTTGTATTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATT : 12541 365 : GlnLeuAsnLeuAsnThrPheAlaLys >>>> Target Intron 4 >>>> ValV : 375 !:!!||||||.!.!:!|||:!!:!! 78 bp :!!| ThrMetAsnLeuGlnSerPheSerGlu++ ++IleV 12540 : ACAATGAACTTGCAAAGTTTCTCAGAGgt.........................agATTG : 12430 376 : alLysThrSerValSerTyrPheThrValLeuLysSerVal : 388 ||||||||||||||||||||!:!! !||||||||||||||| alLysThrSerValSerTyrTyrMetValLeuLysSerVal 12429 : TAAAGACGTCTGTCTCGTACTACATGGTACTGAAATCCGTA : 12389 vulgar: AfOr106 118 388 . KQ414772.1 14181 12388 - 463 M 51 153 G 1 0 M 44 132 S 0 2 5 0 2 I 0 261 3 0 2 S 1 1 M 60 180 G 0 3 M 2 6 S 0 2 5 0 2 I 0 574 3 0 2 S 1 1 M 50 150 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 44 132 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 12389 14181 463 - . gene_id 1 ; sequence AfOr106 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 13895 14181 . - . KQ414772.1 exonerate:protein2genome:local exon 13895 14181 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local splice5 13893 13894 . - . intron_id 1 ; splice_site "gt" KQ414772.1 exonerate:protein2genome:local intron 13630 13894 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 13630 13631 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 13438 13629 . - . KQ414772.1 exonerate:protein2genome:local exon 13438 13629 . - . insertions 3 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 13436 13437 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 12860 13437 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 12860 12861 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 12707 12859 . - . KQ414772.1 exonerate:protein2genome:local exon 12707 12859 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 12705 12706 . - . intron_id 3 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 12645 12706 . - . intron_id 3 KQ414772.1 exonerate:protein2genome:local splice3 12645 12646 . - . intron_id 2 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 12512 12644 . - . KQ414772.1 exonerate:protein2genome:local exon 12512 12644 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 12510 12511 . - . intron_id 4 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 12434 12511 . - . intron_id 4 KQ414772.1 exonerate:protein2genome:local splice3 12434 12435 . - . intron_id 3 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 12389 12433 . - . KQ414772.1 exonerate:protein2genome:local exon 12389 12433 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 12389 14181 463 - . alignment_id 1 ; Query AfOr106 ; Align 14182 119 153 ; Align 14029 171 132 ; Align 13629 216 180 ; Align 13446 276 6 ; Align 12859 279 150 ; Align 12644 330 132 ; Align 12434 374 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 268 Query range: 49 -> 215 Target range: 30115 -> 29355 50 : SerAsnIleIleLeuPhePheSerLeuSerValAlaMetAspGlnValProPheLeuVal : 69 :!!:!!|||:!!:!! ! !:! !..!|||!.!!!:!!:||| !|||||||||:!! AlaHisIleLeuValAsnArgAsnThrAspValValIleGluGlnCysProPheLeuMet 30115 : GCACACATCTTAGTGAATCGGAACACGGATGTTGTAATAGAGCAATGCCCATTTTTGATG : 30058 70 : ValAlaThrLeuLeuMetIleLysTyrAsnPhePheIleIleAsnGluGlnLys >>>> : 88 |||||| :::::::::||| ! !!:!||||||:!!|||:!!:!! ValAlaIleGlyIleIleLeuLysGluAlaAsnTyrIleIleHisGluLysGlu++ 30057 : GTCGCGataggaataattttaaaggAGGCGAATTACATCATACACGAGAAAGAGgt.... : 29999 89 : Target Intron 1 >>>> PheLysGluLeuPheThrSerIleLeuAsnAspTrpG : 100 74 bp .!.||||||:!!.!. !!!!:!!!!!||||||||| ++LeuLysGluMetIleGluCysLeuPheAsnAspTrpV 29998 : .....................agCTAAAGGAGATGATAGAGTGCTTATTCAACGATTGGG : 29891 101 : lnLysLysLysThrHisGluGluGluMetIleMetGluLysTyrAlaAspLysSerValP : 120 !! !! !::! ...||| ||||||:!:||||||||| !:!.!!:!!| alThrThrArgProLysSerGluIleGluIleMetAspLysTyrAlaArgArgGlyLeuP 29890 : TAACGACACGGCcgaaaagtgaaattgaaattatggACAAGTATGCGAGAAGAGGCCTGT : 29831 121 : hePheIleLeuIleTyrVal{V} >>>> Target Intron 2 >>>> {al}AsnA : 129 |||||! !! !:!:||||||{!} 191 bp {.!}|||! hePheAsnArgLeuTyrVal{A}++ ++{la}AsnG 29830 : TTTTCAATCGTTTGTACGTC{G}gt.........................ag{CA}AATG : 29613 130 : laTyrPheCysSerIleLeuPheLeuLeuLeuProPheThrProIleLeuLeuAspIleP : 149 .! !||||||! !:!!:!!||| !! !:!! !!.!.|||||| !:!!||||||:!!. lyIlePheCysTyrValIlePheThrSerValAlaIleThrProArgValLeuAspLeuI 29612 : GAATCTTCTGCTACGTTATATTCACCTCAGTGGCGATAACCCCTCGTGTTCTCGACCTTA : 29553 150 : heIleProLeuAsnGluSerArgProArgValGlnMetTyrProAlaTyrTyrTyrIleG : 169 !! ||| !|||||||||||| ! !! ! !!:||||||||||||||| !:!!! leSerProLysAsnGluSerArgGlyValGlyPheIleTyrProAlaTyrTyrGlyLeuA 29552 : TTTCGCCGAAAAACGAATCGCGCGGAGTGGGCTTCATTTATCCTGCATACTACGGTCTTG : 29493 170 : luAsnGluAlaAspTyrTyrTyrProIleLeuIlePheSerIleValSerLeuLeuThrA : 189 !:.!.|||! ! !!||||||||| :!::!! ! !! !:!! ! !:!! !..!! spGluGluGluHisTyrTyrTyr---LeuMetGlyHisMetLeuSerValIleThrValV 29492 : ACGAAGAGGAGCATTACTACTAT---CTGATGGGTCACATGCTTTCCGTGATAACCGTCG : 29436 190 : laMetCysValPheIleAlaThrAspThrMetLeuIleTyrIleValGlnHisAlaCysG : 209 .!.!.! !|||!:!|||:!! !||||||!!:! !!!: !!:!!|||||||||||||||| alPhePheValTyrIleSerCysAspThrIleTyrMetAsnValValGlnHisAlaCysG 29435 : TGTTTTTCGTCTACATCTCCTGTGACACGATCTATATGAATGTCGTGCAACACGCGTGTG : 29376 210 : lyLeuLeuAlaLeuAlaGly : 215 |||||||| !:!!:!!||| lyLeuLeuAsnValSerGly 29375 : GATTATTGAACGTCTCTGGG : 29356 vulgar: AfOr106 49 215 . KQ414772.1 30115 29355 - 268 M 38 114 5 0 2 I 0 70 3 0 2 M 39 117 S 0 1 5 0 2 I 0 187 3 0 2 S 1 2 M 49 147 G 1 0 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29356 30115 268 - . gene_id 2 ; sequence AfOr106 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 30002 30115 . - . KQ414772.1 exonerate:protein2genome:local exon 30002 30115 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 30000 30001 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 29928 30001 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 29928 29929 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 29810 29927 . - . KQ414772.1 exonerate:protein2genome:local exon 29810 29927 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 29808 29809 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 29619 29809 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 29619 29620 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 29356 29618 . - . KQ414772.1 exonerate:protein2genome:local exon 29356 29618 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 29356 30115 268 - . alignment_id 2 ; Query AfOr106 ; Align 30116 50 114 ; Align 29928 88 117 ; Align 29617 128 147 ; Align 29470 178 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 263 Query range: 86 -> 296 Target range: 33949 -> 32178 87 : LysPheLysGluLeuPheThrSerIleLeuAsnAspTrpGlnLysLysLysThrHisGlu : 106 :!!.!.||| !|||||| !!!!|||!!!||||||||| !! !!:!::! !! ! ... GlnLeuLysThrLeuPheGluCysIlePheAsnAspTrpIleThrArgArgProLysSer 33949 : CAGCTAAAGACACTATTCGAATGCATATTCAACGATTGGATAACGAGACGACCGAAAAGC : 33892 107 : GluGluMetIleMetGluLysTyrAlaAspLysSerValPhePheIleLeuIleTyrVal : 126 ||| ! ||||||!!:||||||||| !:!.!!:!!||||||! !! !:!:|||||| GluMetGluIleMetAspLysTyrAlaArgArgGlyLeuPhePheAsnArgLeuTyrVal 33891 : GAGATGGAAATAATGGACAAGTATGCGAGGAGGGGCCTGTTTTTCAATCGCTTGTACGTC : 33832 127 : {V} >>>> Target Intron 1 >>>> {al}AsnAlaTyrPheCysSerIleLeu : 135 {!} 153 bp {.!}|||!.! ||||||! !|||:!! {A}++ ++{la}AsnGlyValPheCysTyrIleMet 33831 : {G}gt.........................ag{CA}AACGGAGTGTTTTGCTACATCATG : 33652 136 : PheLeuLeuLeuProPheThrProIleLeuLeuAspIlePheIleProLeuAsnGluSer : 155 ||| !! ! !||||||! !||| !!!!:!!|||:!! :!: !! !||||||||| PheSerSerAlaProPheIleProHisPheIleAspValAlaLeuSerLysAsnGluSer 33651 : TTCAGCTCGGCGCCTTTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAACGAGTCA : 33592 156 : ArgProArgValGlnMetTyrProAlaTyrTyrTyrIleGluAsnGluAlaAspTyrTyr : 175 ||| ! ! ! !|||||||||||||||||| !|||!!:.!.!:: |||||| ArgLysLeuSerLeuMetTyrProAlaTyrTyrGlyIleAspGlnAsp---LysTyrTyr 33591 : CGAAAATTAAGTTTGATGTACCCTGCCTATTACGGCATTGACCAGGac---aagtattat : 33535 176 : TyrProIleLeuIlePheSerIleValSerLeuLeuThrAlaMetCysValPheIleAla : 195 ||| :::::: ! !! !!!: !:!! ! !.!!!.!.!.! !||||||!!::!! TyrTyrLeuMetAlaHisMetMetSerAlaGlyAlaAlaValPhePheValPheMetSer 33534 : tattatctaatgGCTCACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATGTCC : 33475 196 : ThrAspThrMetLeuIleTyrIleValGlnHisAlaCysGlyLeuLeuAlaLeuAla{Gl : 215 !||||||!!:! !!!: !!||||||||||||||||||||||||||| !:!!:!!{|| CysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuPheIleSer{Gl 33474 : TGCGACACGATTTATATGAATATCGTTCAACACGCGTGCGGATTGTTGTTCATTTCC{GG : 33415 216 : } >>>> Target Intron 2 >>>> {y}HisArgPheArgAsnSerLeuAsnAsp : 224 } 991 bp {|} !..!! ! !.!.!.!||| ... }++ --{y}PheGlu***LeuGlnLysLeuProSer 33414 : }gt.........................ga{C}TTCGAATGACTTCAAAAATTACCATCt : 32397 225 : LeuTyrSerSerArgLysAspSerLysValAspGlyLysIleTyrArgArgLeuCysTyr : 244 :::|||...:::||| !|||||| !..!:::|||::: ...... GlnPheSerLysLysLys***LeuLysValIleSerArgIlePheLeuHisPhePheIle 32396 : caatttagtaaaaaaaagtagCTGAAAGTTATTTCACGaatctttttacatttttttatc : 32337 245 : AlaIleLysThrHisLysArgAlaLeuAlaTyrLeuAlaGluIleGluAspPheTyrSer : 264 ::: !.! ! ! ! !::!||||||!.!|||||||||! .!.:!! ! IleLeuCysAsnValHisValArgAsnSerTyrLeuGlyGluIleGluAlaMetHisHis 32336 : attttgtgCAATGTACATGTCCGGAACAGTTATCTTGGAGAGATCGAAGCAATGCACCAT : 32277 265 : ValAsnIlePheMetGlnValGlyAlaSerIleLeuCysLeuThrValThrMetMetLys : 284 ..! !!:!:|||!!: !|||||| ! !!!:!!!..!!!!!:!:!!|||:!!:!:!:! ThrTyrLeuPheIleValValGlyMetValMetPheAlaPheSerIleThrLeuLeuArg 32276 : ACATACCTGTTCATAGTAGTGGGAATGGTTATGTTCGCCTTCAGTATCACGCTGCTAAGG : 32217 285 : IleAlaThrIleThrTrpSerMetGluThrAsnGln : 296 :!! ...::: :!: :!!|||::! ValArgGlnPheSerIleHisValLeuSerAsnArg 32216 : GTTAgacaattttccattcacGTTCTTTCAAATAGA : 32179 vulgar: AfOr106 86 296 . KQ414772.1 33949 32178 - 263 M 40 120 S 0 1 5 0 2 I 0 149 3 0 2 S 1 2 M 44 132 G 1 0 M 42 126 S 0 2 5 0 2 I 0 987 3 0 2 S 1 1 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 32179 33949 263 - . gene_id 3 ; sequence AfOr106 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 33829 33949 . - . KQ414772.1 exonerate:protein2genome:local exon 33829 33949 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 33827 33828 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 33676 33828 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 33676 33677 . - . intron_id 0 ; splice_site "ag" KQ414772.1 exonerate:protein2genome:local cds 33414 33675 . - . KQ414772.1 exonerate:protein2genome:local exon 33414 33675 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local splice5 33412 33413 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 32423 33413 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 32423 32424 . - . intron_id 1 ; splice_site "GA" KQ414772.1 exonerate:protein2genome:local cds 32179 32422 . - . KQ414772.1 exonerate:protein2genome:local exon 32179 32422 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 32179 33949 263 - . alignment_id 3 ; Query AfOr106 ; Align 33950 87 120 ; Align 33674 128 132 ; Align 33542 173 126 ; Align 32422 216 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 244 Query range: 299 -> 387 Target range: 19831 -> 19369 300 : TyrValIleAlaGlnValValHisIlePhePheLeuThrAlaGlnGlyGlnPheValIle : 319 !:! !!:!!!.!|||!.! !!|||:!!|||||||||!.!!.!|||||||||||||||||| PhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGlnGlyGlnPheValIle 19831 : TTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGGACAATTTGTGATA : 19774 320 : AspSerHisGluAsnValTyrTrpAsp{Me} >>>> Target Intron 1 >>>> : 329 :!!:!! !!!:.!.:!!||| ! {!!} 113 bp AsnAlaPheAspGluLeuTyrAspLys{Il}++ ++ 19773 : AACGCATTCGACGAACTGTACGACAAG{AT}gt.........................ag : 19631 330 : {t}TyrGluProTyrTrpTyrAsnLeuGlnSerLysMetGlnAlaMetPheValLeuIle : 348 {:}|||||| !! ! |||||||||!!! !!!:!! ||||||:!!!:!|||||| ! {e}TyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAla 19630 : {A}TACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCA : 19574 349 : LeuArgArgAsnLeuAsnProProLeuLeuThrAlaGlyGlyLeuValGlnLeuAsnLeu : 368 ||||||!!! !||||||||||||||||||||||||||||||:!!..! !||||||||| LeuArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeu 19573 : TTGAGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTA : 19514 369 : AsnThrPheAlaLys >>>> Target Intron 2 >>>> ValValLysThrSerV : 379 ...:!!||||||:!! 85 bp :!!:!!|||.!!|||| ArgSerPheAlaGlu++ ++IleIleLysAlaSerV 19513 : CGATCGTTCGCAGAGgt.........................agATCATCAAAGCATCTG : 19396 380 : alSerTyrPheThrValLeuLysSer : 387 ||||||||!:!||||||:!!:!!!!! alSerTyrTyrThrValMetGlnThr 19395 : TTTCCTACTACACGGTGATGCAGACC : 19370 vulgar: AfOr106 299 387 . KQ414772.1 19831 19369 - 244 M 29 87 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 44 132 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 19370 19831 244 - . gene_id 4 ; sequence AfOr106 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 19743 19831 . - . KQ414772.1 exonerate:protein2genome:local exon 19743 19831 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 19741 19742 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 19630 19742 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 19630 19631 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 19497 19629 . - . KQ414772.1 exonerate:protein2genome:local exon 19497 19629 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 19495 19496 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 19412 19496 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 19412 19413 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 19370 19411 . - . KQ414772.1 exonerate:protein2genome:local exon 19370 19411 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 19370 19831 244 - . alignment_id 4 ; Query AfOr106 ; Align 19832 300 87 ; Align 19629 330 132 ; Align 19412 374 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 230 Query range: 66 -> 215 Target range: 38401 -> 37769 67 : PheLeuValValAlaThrLeuLeuMetIleLysTyrAsnPhePheIleIleAsnGluGln : 86 !:!! !!.!:!! ! !|||! ! |||::!! ||| !! :!:! !...:!! ! TyrSerAlaIleArgTyrLeuArgHisIleArg***AsnAsn***LeuArgArgLysLeu 38401 : TACTCTGCTATCCGTTATCTCCGACACATACGGTGAAATAACTAATTGAGACGAAAATTA : 38344 87 : LysPheLysGluLeuPheThrSerIleLeuAsnAspTrpGlnLysLysLysThrHisGlu : 106 :!!.!.!:!..!|||!!. !!!!|||!!!:!!|||||| !! !|||::! !! ! GlnLeuArgSerLeuLeuGlyCysIlePheAspAspTrpLeuIleLysArgProLysThr 38343 : CAGCTAAGATCGCTTTTGGGGTGCATATTCGATGATTGGTTAATAAAGCGGCCGAAAACC : 38284 107 : GluGluMetIleMetGluLysTyrAlaAspLysSerValPhePheIleLeuIleTyrVal : 126 ||| ! ||||||!!:||||||||| ! !:!.!! !||||||! !! !:!:|||||| GluMetAspIleMetAspLysTyrAlaLysArgGlyArgPhePheSerArgLeuTyrVal 38283 : GAAATGGACATTATGGACAAGTACGCTAAAAGAGGCCGGTTTTTCAGTCGTTTGTACGTT : 38224 127 : {V} >>>> Target Intron 1 >>>> {al}AsnAlaTyrPheCysSerIleLeu : 135 {|} 188 bp {||}|||!.! ||||||! !:!!:!! {V}++ ++{al}AsnGlyLeuPheCysTyrValIle 38223 : {G}gt.........................ag{TA}AACGGACTGTTTTGCTACGTTATA : 38009 136 : PheLeuLeuLeuProPheThrProIleLeuLeuAspIlePheIleProLeuAsnGluSer : 155 ||| !! !:!! !!.!!|||||| !:!!||||||:!!.!! !||| !||||||||| PheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSer 38008 : TTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCG : 37949 156 : ArgProArgValGlnMetTyrProAlaTyrTyrTyrIleGluAsnGluAlaAspTyrTyr : 175 ||| ! !! ! !!:||||||||||||||| !:!!!!:.!.||| !!::!!||| ArgGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAspGluGlu---GluHisTyr 37948 : CGTGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAG---GAACATTAT : 37892 176 : TyrProIleLeuIlePheSerIleValSerLeuLeuThrAlaMetCysValPheIleAla : 195 ||| !:!::!! ! !! !:!! ! !:!! !..!!.!.!.! !|||!:!|||:!! TyrIleLeuMetGlyHisMetLeuCysValIleThrValValPhePheValTyrIleSer 37891 : TACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTGTACATCTCC : 37832 196 : ThrAspThrMetLeuIleTyrIleValGlnHisAlaCysGlyLeuLeuAlaLeuAlaGly : 215 !||||||!!:! !!!: !||||||||||||||||||||||||||| !:!!:!!||| CysAspThrIleTyrMetSerIleValGlnHisAlaCysGlyLeuLeuAsnValSerGly 37831 : TGTGACACGATCTACATGAGCATCGTTCAACACGCGTGCGGATTACTGAACGTCTCTGGG : 37772 vulgar: AfOr106 66 215 . KQ414772.1 38401 37769 - 230 M 60 180 S 0 1 5 0 2 I 0 184 3 0 2 S 1 2 M 44 132 G 1 0 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37770 38401 230 - . gene_id 5 ; sequence AfOr106 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 38221 38401 . - . KQ414772.1 exonerate:protein2genome:local exon 38221 38401 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 38219 38220 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 38033 38220 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 38033 38034 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 37770 38032 . - . KQ414772.1 exonerate:protein2genome:local exon 37770 38032 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 37770 38401 230 - . alignment_id 5 ; Query AfOr106 ; Align 38402 67 180 ; Align 38031 128 132 ; Align 37899 173 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 221 Query range: 47 -> 213 Target range: 21488 -> 20325 48 : GlnGlySerAsnIleIleLeuPhePheSerLeuSerValAlaMetAspGlnValProPhe : 67 ||| !:!!|||! !:!:||||||||||||:!!..! ! !:!!||| :!!|||||| GlnIleAlaAsnThrValLeuPhePheSerMetAspAsnLeuValAspGlyIleProPhe 21488 : CAGATAGCAAACACCGTGCTATTCTTCAGCATGGACAATCTCGTGGATGGCATACCTTTC : 21431 68 : LeuValValAlaThrLeuLeuMetIleLysTyrAsnPhePheIleIleAsnGluGlnLys : 87 !|||!.!|||..! ! !.!.:!:||| ..! !!:!|||||||||||| ||| AsnValAlaAlaValGlyThrPheValLysLeuGlyAsnTyrIleIleAsnGluThrLys 21430 : AACGTGGCAGCGGTTGGGACGTTCGTGAAACTGGGTAATTACattataaacgaaacgaag : 21371 88 : >>>> Target Intron 1 >>>> PheLysGluLeuPheThrSerIleLeuAsnA : 98 668 bp ! !||| :!! ! |||! ! !! !!!.! ++ +-CysLysIleMetValThrTyrAlaArgLysG 21370 : gt.........................aaTGCAAGATCATGGTGACCTATGCTCGAAAAG : 20670 99 : spTrpGlnLysLysLysThrHisGluGluGluMetIleMetGluLysTyrAlaAspLysS : 118 ! !! ! ! !:!!! !! |||||| ! |||! ! ! !!.! lyGlnLeuIleAlaLeuCysTyrAlaGlyGluMetGluAsnGluIleThrGlnArgAsnT 20669 : GACAACTGATCGCGTTGTGTTACGCAGGTGAGATGGAGAATGAAATTACCCAGAGAAATT : 20610 119 : erValPhePheIleLeuIleTyrValValAsnAlaTyrPheCysSerIleLeuPheLeuL : 138 !:!!.!!! ! !|||! ! !..!!.!:!! !!:!.!! !:!! !:!!||||||! yrLeuIleSerProLeuThrSerThrAlaHisLeuPheLeuProAlaAlaIlePheLeuC 20609 : ACCTTATTTCTCCTTTGACGTCTACAGCGCATTTGTTCCTTCCCGCGGCCATATTCTTAT : 20550 139 : euLeuProPheThrProIleLeuLeuAspIlePheIleProLeuAsnGluSerArgProA : 158 !:!!||||||.!!||||||:!!|||||||||!:! |||||||||:!!!!!||| !| ysValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsnLysThrArgLysA 20549 : GCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAACAAAACGAGAAAAC : 20490 159 : rgValGlnMetTyrProAlaTyrTyrTyrIleGluAsnGluAlaAspTyrTyrTyrProI : 178 ||||| :!:|||||||||||||||!::!!:!!: !||| .!.|||||| !! rgValPheValTyrProAlaTyrTyrTrpMetAspProGlu---GlnTyrTyrMetIleM 20489 : GTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAG---CAATACTACATGATAA : 20433 179 : leLeuIlePheSerIleValSerLeuLeuThrAlaMetCysValPheIleAlaThrAspT : 198 !::!!||| !! !!!: !! !:!!:!!! !!.! !:!!||| !||| !|||! etIleIleHisIleMetPheValValIleMetValCysValIlePheCysAlaCysAspM 20432 : TGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGTGCTTGCGACA : 20373 199 : hrMetLeuIleTyrIleValGlnHisAlaCysGlyLeuLeuAlaLeu : 213 !! ! !:!:||| !|||||||||||||||||||||||||||:!! etAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaVal 20372 : TGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: AfOr106 47 213 . KQ414772.1 21488 20325 - 221 M 40 120 5 0 2 I 0 664 3 0 2 M 84 252 G 1 0 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 21488 221 - . gene_id 6 ; sequence AfOr106 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 21369 21488 . - . KQ414772.1 exonerate:protein2genome:local exon 21369 21488 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 21367 21368 . - . intron_id 1 ; splice_site "gt" KQ414772.1 exonerate:protein2genome:local intron 20701 21368 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 20701 20702 . - . intron_id 0 ; splice_site "AA" KQ414772.1 exonerate:protein2genome:local cds 20326 20700 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20700 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 20326 21488 221 - . alignment_id 6 ; Query AfOr106 ; Align 21489 48 120 ; Align 20701 88 252 ; Align 20449 173 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 210 Query range: 283 -> 379 Target range: 17319 -> 16629 284 : LysIleAlaThrIleThrTrpSerMetGluThrAsnGlnTyrTyrGlyTyrValIleAla : 303 :!!:!:::!||| !!::..!!!:!!: ! !!::!|||! !.!!!:!..!:!:..! GlnLeuSerThrSerAspPheAspIleAspPheTyrArgTyrCysSerPheThrLeuCys 17319 : CAGCTGAGTACGTCGGATTTCGACATAGACTTCTACAGATATTGCAGTTTTACGTTGTGT : 17262 304 : GlnValValHisIlePhePheLeuThrAlaGlnGlyGlnPheValIleAspSerHisGlu : 323 |||:!!:!!|||:!:||| !!:!!! ! !|||||||||||||||:!:|||||| !||| GlnLeuMetHisLeuPheValIleMetLeuGlnGlyGlnPheValLeuAspSerCysGlu 17261 : CAACTGATGCACCTGTTCGTTATCATGCTTCAGGGACAGTTCGTGCTGGATTCGTGCGAG : 17202 324 : AsnValTyrTrpAsp{Me} >>>> Target Intron 1 >>>> {t}TyrGluPro : 332 !..:!!:!! !! {!!} 402 bp {:}|||||| !! ArgIleHisGluAla{Il}++ ++{e}TyrGluSer 17201 : AGAATTCACGAGGCG{AT}gt.........................ag{A}TACGAATCA : 16773 333 : TyrTrpTyrAsnLeuGlnSerLysMetGlnAlaMetPheValLeuIleLeuArgArgAsn : 352 ! ||||||!.. !...||||||! ||||||:!:!:!|||:!! |||||||||||| LeuTrpTyrThrSerSerSerLysThrGlnAlaLeuTyrValValAlaLeuArgArgAsn 16772 : TTATGGTACACAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCGTTACGAAGAAAC : 16713 353 : LeuAsnProProLeuLeuThrAlaGlyGlyLeuValGlnLeuAsnLeuAsnThrPheAla : 372 |||!..||| !!! !||||||||||||||||||||||||||||||:!!.!.!:!|||||| LeuThrProThrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMetGlnSerPheAla 16712 : CTAACACCTACCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATGCAAAGCTTCGCA : 16653 373 : LysValValLysThrSerVal : 379 :!!||| !! |||!.!:!! GluValAsnIleThrLysIle 16652 : GAGGTAAACATCACCAAAATT : 16630 vulgar: AfOr106 283 379 . KQ414772.1 17319 16629 - 210 M 45 135 S 0 2 5 0 2 I 0 398 3 0 2 S 1 1 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 16630 17319 210 - . gene_id 7 ; sequence AfOr106 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 17183 17319 . - . KQ414772.1 exonerate:protein2genome:local exon 17183 17319 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 17181 17182 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 16781 17182 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 16781 16782 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 16630 16780 . - . KQ414772.1 exonerate:protein2genome:local exon 16630 16780 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 16630 17319 210 - . alignment_id 7 ; Query AfOr106 ; Align 17320 284 135 ; Align 16780 330 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 202 Query range: 284 -> 374 Target range: 45167 -> 44867 285 : IleAlaThrIleThrTrpSerMetGluThrAsnGlnTyrTyrGlyTyrValIleAlaGln : 304 ||||||..!! ! ! |||.!.!!:! ! !::!! ! ! !!:!:!!||||||||| IleAlaValThrGluIleSerPheAspIleCysArgLeuCysThrPheLeuIleAlaGln 45167 : ATAGCCGTGACAGAAATTAGCTTCGATATATGCAGATTGTGCACGTTCCTGATCGCACAA : 45110 305 : ValValHisIlePhePheLeuThrAlaGlnGlyGlnPheValIleAspSerHisGluAsn : 324 ..!||||||!!:.!.||||||||| !|||||||||||||||||||||||||||!!:!.. ThrValHisMetLeuPheLeuThrIleGlnGlyGlnPheValIleAspSerHisAspThr 45109 : ACTGTACACATGCTGTTTTTGACGATTCAGGGACAGTTCGTGATCGATTCGCATGATACA : 45050 325 : ValTyrTrpAsp{Me} >>>> Target Intron 1 >>>> {t}TyrGluProTyr : 333 |||||| :!!{:!} 33 bp {:}|||||| !! ! ValTyr---Asn{Va}++ ++{l}TyrGluAlaIle 45049 : GTGTAC---AAT{GT}gt.........................ag{A}TACGAGGCAATT : 44993 334 : TrpTyrAsnLeuGlnSerLysMetGlnAlaMetPheValLeuIleLeuArgArgAsnLeu : 353 ||||||!!.:!!! ! !!|||:!:||| !:!: !|||:!! ||||||!:!!:!||| TrpTyrLysMetProProLysLeuGlnLeuLeuAspValValAlaLeuArgLysSerLeu 44992 : TGGTATAAGATGCCACCTAAACTTCAGTTGCTAGACGTTGTAGCGCTTAGAAAAAGCCTA : 44933 354 : AsnProProLeuLeuThrAlaGlyGlyLeuValGlnLeuAsnLeuAsnThrPheAlaLys : 373 !.!||||||:!!||||||||||||||||||:!!!:!|||:!!||||||:!!||||||:!! ThrProProIleLeuThrAlaGlyGlyLeuMetArgLeuAspLeuAsnSerPheAlaGln 44932 : ACTCCTCCTATACTGACGGCGGGAGGGTTGATGCGGTTAGATTTGAATTCTTTCGCACAG : 44873 374 : Val : 374 ||| Val 44872 : GTG : 44868 vulgar: AfOr106 284 374 . KQ414772.1 45167 44867 - 202 M 42 126 G 1 0 M 1 3 S 0 2 5 0 2 I 0 29 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 44868 45167 202 - . gene_id 8 ; sequence AfOr106 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 45037 45167 . - . KQ414772.1 exonerate:protein2genome:local exon 45037 45167 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local splice5 45035 45036 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 45004 45036 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 45004 45005 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 44868 45003 . - . KQ414772.1 exonerate:protein2genome:local exon 44868 45003 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 44868 45167 202 - . alignment_id 8 ; Query AfOr106 ; Align 45168 285 126 ; Align 45042 328 3 ; Align 45003 330 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 176 Query range: 333 -> 387 Target range: 28104 -> 27882 334 : TrpTyrAsnLeuGlnSerLysMetGlnAlaMetPheValLeuIleLeuArgArgAsnLeu : 353 ||||||||| ! !|||!:!! !||||||:!!!:!:!!||| !||||||||||||||| TrpTyrAsnSerThrSerArgThrGlnAlaLeuTyrMetLeuAlaLeuArgArgAsnLeu 28104 : TGGTACAACAGTACATCTAGAACGCAAGCTTTGTACATGCTAGCTTTGAGAAGGAACTTG : 28047 354 : AsnProProLeuLeuThrAlaGlyGlyLeuValGlnLeuAsnLeuAsnThrPheAlaLys : 373 !..|||||||||:!!|||||||||||||||:!!...|||||||||.!.|||||||||:!! ThrProProLeuIleThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGlu 28046 : ACACCACCACTGATCACCGCCGGAGGACTGATTTCCTTGAATTTGGAGACCTTCGCGGAG : 27987 374 : >>>> Target Intron 1 >>>> ValValLysThrSerValSerTyrPheThrV : 384 60 bp :!!:!!|||.!!|||||||||!::||||||| ++ ++IleLeuLysAlaSerValSerTrpPheThrV 27986 : gt.........................agaTATTAAAAGCATCTGTTTCCTGGTTCACGG : 27894 385 : alLeuLysSer : 387 ||:!!|||||| alMetLysSer 27893 : TAATGAAATCG : 27883 vulgar: AfOr106 333 387 . KQ414772.1 28104 27882 - 176 M 40 120 5 0 2 I 0 56 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 27883 28104 176 - . gene_id 9 ; sequence AfOr106 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 27985 28104 . - . KQ414772.1 exonerate:protein2genome:local exon 27985 28104 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 27983 27984 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 27925 27984 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 27925 27926 . - . intron_id 0 ; splice_site "ag" KQ414772.1 exonerate:protein2genome:local cds 27883 27924 . - . KQ414772.1 exonerate:protein2genome:local exon 27883 27924 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 27883 28104 176 - . alignment_id 9 ; Query AfOr106 ; Align 28105 334 120 ; Align 27925 374 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 172 Query range: 118 -> 215 Target range: 24464 -> 24176 119 : ValPhePheIleLeuIleTyrValValAsnAlaTyrPheCysSerIleLeuPheLeuLeu : 138 ...||| ||| ! !!.!!.!|||!.! !||||||! !:!!|||||| ! ! ThrPheSerSerLeuTyrValAlaAlaAsnGlyIlePheCysTyrValLeuPheThrAla 24464 : acattttcttctctataTGTCGCAGCAAATGGAATCTTCTGCTACGTTCTCTTCACCGCA : 24407 139 : LeuProPheThrProIleLeuLeuAspIlePheIleProLeuAsnGluSerArgProArg : 158 :!! !!.!!|||||| !:!!||||||:!!.!! ||| !|||||||||||| ! ! ValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyVal 24406 : GTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTG : 24347 159 : ValGlnMetTyrProAlaTyrTyrTyrIleGluAsnGluAlaAspTyrTyrTyrProIle : 178 ! ! !!:||||||||| !!||| !:!!!!:.!.|||! ! !!||||||||| :!: GlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyrTyrTyr---Leu 24346 : GGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTACTACTAT---CTG : 24290 179 : LeuIlePheSerIleValSerLeuLeuThrAlaMetCysValPheIleAlaThrAspThr : 198 :!! ! !! !:!! ! !:!! !..!!.!.!.! !|||!:!|||:!! !|||||| MetGlyHisMetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThr 24289 : ATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGTGACACG : 24230 199 : MetLeuIleTyrIleValGlnHisAlaCysGlyLeuLeuAlaLeuAlaGly : 215 !!:! !!!: !!||||||||||||||||||||||||||| !|||:!!||| IleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSerGly 24229 : ATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCTGGG : 24177 vulgar: AfOr106 118 215 . KQ414772.1 24464 24176 - 172 M 58 174 G 1 0 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24177 24464 172 - . gene_id 10 ; sequence AfOr106 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24177 24464 . - . KQ414772.1 exonerate:protein2genome:local exon 24177 24464 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 24177 24464 172 - . alignment_id 10 ; Query AfOr106 ; Align 24465 119 174 ; Align 24291 178 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 168 Query range: 322 -> 387 Target range: 37064 -> 36630 323 : GluAsnValTyrTrpAspMetTyrGluProTyrTrpTyrAsnLeuGlnSerLysMetGln : 342 :!!.!.:!!!:! !! |||... !! ! ||||||||| !..! !!!:!! !||| GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 37064 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 37007 343 : AlaMetPheValLeuIleLeuArgArgAsnLeuAsnProProLeuLeuThrAlaGlyGly : 362 .!!:!!!:!|||||| !|||||||||!:!|||!.!|||||||||||||||||||||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 37006 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 36947 363 : LeuValGlnLeuAsnLeuAsnThrPheAlaLys >>>> Target Intron 1 >>>> : 374 |||:!!...|||||||||.!.|||||||||::: 239 bp LeuIleSerLeuAsnLeuGluThrPheAlaGlu++ 36946 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGaggt......................... : 36909 375 : ValValLysThrSerValSerTyrPheThrValLeuLysSer : 387 :!!:!!||| !|||||||||:::|||||||||:!!|||||| ++IleLeuLysGlySerValSerPhePheThrValMetLysSer 36908 : agaTCTTAAAAGGGtccgtttcctttttcacgGTAATGAAATCG : 36631 vulgar: AfOr106 322 387 . KQ414772.1 37064 36630 - 168 M 51 153 5 0 2 I 0 235 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 36631 37064 168 - . gene_id 11 ; sequence AfOr106 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 36912 37064 . - . KQ414772.1 exonerate:protein2genome:local exon 36912 37064 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 36910 36911 . - . intron_id 1 ; splice_site "gt" KQ414772.1 exonerate:protein2genome:local intron 36673 36911 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 36673 36674 . - . intron_id 0 ; splice_site "ag" KQ414772.1 exonerate:protein2genome:local cds 36631 36672 . - . KQ414772.1 exonerate:protein2genome:local exon 36631 36672 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 36631 37064 168 - . alignment_id 11 ; Query AfOr106 ; Align 37065 323 153 ; Align 36673 374 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 168 Query range: 322 -> 387 Target range: 35630 -> 35196 323 : GluAsnValTyrTrpAspMetTyrGluProTyrTrpTyrAsnLeuGlnSerLysMetGln : 342 :!!.!.:!!!:! !! |||... !! ! ||||||||| !..! !!!:!! !||| GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 35630 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 35573 343 : AlaMetPheValLeuIleLeuArgArgAsnLeuAsnProProLeuLeuThrAlaGlyGly : 362 .!!:!!!:!|||||| !|||||||||!:!|||!.!|||||||||||||||||||||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 35572 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 35513 363 : LeuValGlnLeuAsnLeuAsnThrPheAlaLys >>>> Target Intron 1 >>>> : 374 |||:!!...|||||||||.!.|||||||||:!! 239 bp LeuIleSerLeuAsnLeuGluThrPheAlaGlu++ 35512 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGAGgt......................... : 35475 375 : ValValLysThrSerValSerTyrPheThrValLeuLysSer : 387 :!!:!!||| !|||||||||:::|||||||||:!!|||||| ++IleLeuLysGlySerValSerPhePheThrValMetLysSer 35474 : agaTCTTAAAAGGGtccgtttcctttttcacgGTAATGAAATCG : 35197 vulgar: AfOr106 322 387 . KQ414772.1 35630 35196 - 168 M 51 153 5 0 2 I 0 235 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 35197 35630 168 - . gene_id 12 ; sequence AfOr106 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 35478 35630 . - . KQ414772.1 exonerate:protein2genome:local exon 35478 35630 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 35476 35477 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 35239 35477 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 35239 35240 . - . intron_id 0 ; splice_site "ag" KQ414772.1 exonerate:protein2genome:local cds 35197 35238 . - . KQ414772.1 exonerate:protein2genome:local exon 35197 35238 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 35197 35630 168 - . alignment_id 12 ; Query AfOr106 ; Align 35631 323 153 ; Align 35239 374 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 168 Query range: 123 -> 215 Target range: 18075 -> 17802 124 : IleTyrValValAsnAlaTyrPheCysSerIleLeuPheLeuLeuLeuProPheThrPro : 143 |||!:! !||||||||||||.!!||||||.!!||||||:!!! !:!!|||!:::!! !! IlePheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpSerThr 18075 : ATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGTCGACC : 18018 144 : IleLeuLeuAspIlePheIleProLeuAsnGluSerArgProArgValGlnMetTyrPro : 163 !|||:!!:!! !:!! !!! !||| !!!!! ! ! ! ! :!: ||| ArgLeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuGlnPheValIlePro 18017 : CGATTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCC : 17958 164 : AlaTyrTyrTyrIleGluAsnGluAlaAspTyrTyrTyrProIleLeuIlePheSerIle : 183 !.!||||||!:!:!!!!: |||!.!!!:||||||||| !|||:!!:!! !.!!! GlyTyrTyrPheValAsp---GluValGluTyrTyrTyrTyrIleIleLeuHisGlyThr 17957 : GGATATTACTTCGTCGAC---GAAGTAGAATACTATTATTACATCATACTTCACGGAACG : 17901 184 : ValSerLeuLeuThrAlaMetCysValPheIleAlaThrAspThrMetLeuIleTyrIle : 203 !!!!:!!|||! !!.!:!! |||!:! !||| !||||||! ! !!!: :!: CysThrIleLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeu 17900 : TGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTG : 17841 204 : ValGlnHisAlaCysGlyLeuLeuAlaLeuAlaGly : 215 |||||||||.!!|||||||||!!!|||:!!|||||| ValGlnHisThrCysGlyLeuPheAlaValAlaGly 17840 : GTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 17803 vulgar: AfOr106 123 215 . KQ414772.1 18075 17802 - 168 M 46 138 G 1 0 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17803 18075 168 - . gene_id 13 ; sequence AfOr106 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17803 18075 . - . KQ414772.1 exonerate:protein2genome:local exon 17803 18075 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 17803 18075 168 - . alignment_id 13 ; Query AfOr106 ; Align 18076 124 138 ; Align 17938 171 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 163 Query range: 122 -> 215 Target range: 42748 -> 42472 123 : LeuIleTyrValValAsnAlaTyrPheCysSerIleLeuPheLeuLeuLeuProPheThr : 142 ...|||:::...|||!.!!.! ! !|||! !! !:!!|||:!!! ! !|||!:!! ! PheIlePheThrValThrGlyIleCysCysPheThrMetPheIleSerAlaProTyrIle 42748 : ttcattttcacagTAACTGGAATATGTTGCTTCACAATGTTTATCTCTGCGCCTTATATA : 42691 143 : ProIleLeuLeuAspIlePheIleProLeuAsnGluSerArgProArgValGlnMetTyr : 162 ||| !:!!! !|||:!!.!.:!! !! !|||||||||||| ! !! ! !!:||| ProHisValTyrAspValMetLeuSerLysAsnGluSerArgLysLeuGlyPheIleTyr 42690 : CCGCATGTATATGATGTTATGTTATCGAAAAACGAGTCACGAAAGTTGGGTTTCATTTAC : 42631 163 : ProAlaTyrTyrTyrIleGluAsnGluAlaAspTyrTyrTyrProIleLeuIlePheSer : 182 |||||||||||| !:!!!!:.!.!!: ! ||||||||| !|||:!! ! !! ! ProAlaTyrTyrGlyValAspGlnAsp---LysTyrTyrTyrTyrIleIleAlaHisMet 42630 : CCTGCCTATTATGGCGTTGATCAAGAC---AAGTATTATTACTATATAATAGCTCACATG : 42574 183 : IleValSerLeuLeuThrAlaMetCysValPheIleAlaThrAspThrMetLeuIleTyr : 202 ! ! !.!! !|||..!!.!.!.! !..!||||||:!! !||||||!!:! !!!: !! ThrSerGlyGlyLeuValValPhePheThrPheIleSerCysAspThrIleTyrMetAsn 42573 : ACATCTGGGGGCTTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTACATGAAT : 42514 203 : IleValGlnHisAlaCysGlyLeuLeuAlaLeuAlaGly : 215 ||||||||||||||||||||||||||| !:!!:!!||| IleValGlnHisAlaCysGlyLeuLeuLeuIleSerGly 42513 : ATCGTGCAACACGCGTGCGGATTGTTGTTGATTTCTGGG : 42473 vulgar: AfOr106 122 215 . KQ414772.1 42748 42472 - 163 M 49 147 G 1 0 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42473 42748 163 - . gene_id 14 ; sequence AfOr106 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42473 42748 . - . KQ414772.1 exonerate:protein2genome:local exon 42473 42748 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 42473 42748 163 - . alignment_id 14 ; Query AfOr106 ; Align 42749 123 147 ; Align 42602 173 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 145 Query range: 329 -> 374 Target range: 41380 -> 41245 330 : TyrGluProTyrTrpTyrAsnLeuGlnSerLysMetGlnAlaMetPheValLeuIleLeu : 349 |||!!: !! ||||||||| ! ! !!!:!! !|||.!!:!!!:!:!!||| !||| TyrAspAlaValTrpTyrAsnSerThrProArgThrGlnThrLeuTyrMetLeuAlaLeu 41380 : TACGATGCAGTATGGTACAACAGTACGCCAAGAACGCAAACTTTGTACATGCTAGCTTTG : 41323 350 : ArgArgAsnLeuAsnProProLeuLeuThrAlaGlyGlyLeuValGlnLeuAsnLeuAsn : 369 ||||||!.!|||!.!|||||||||||||||||||||||||||:::...|||||||||... ArgArgThrLeuThrProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGlu 41322 : AGGAGGACTTTAACTCCACCACTGCTCACTGCAGGAGGACtgatttcgttgaatttggaa : 41263 370 : ThrPheAlaLysVal : 374 ||||||::!|||||| ThrPheSerLysVal 41262 : actttttcGAAGGTA : 41246 vulgar: AfOr106 329 374 . KQ414772.1 41380 41245 - 145 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 41246 41380 145 - . gene_id 15 ; sequence AfOr106 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 41246 41380 . - . KQ414772.1 exonerate:protein2genome:local exon 41246 41380 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 41246 41380 145 - . alignment_id 15 ; Query AfOr106 ; Align 41381 330 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 126 -> 205 Target range: 45967 -> 45733 127 : ValAsnAlaTyrPheCysSerIleLeuPheLeuLeuLeuProPheThrProIleLeuLeu : 146 |||!.! !|||.!! ! ! !:!!|||! ! ! !|||.!!! !|||.!!:!!||| ValThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeu 45967 : GTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTG : 45910 147 : AspIlePheIleProLeuAsnGluSerArgProArgValGlnMetTyrProAlaTyrTyr : 166 |||:!!.!! !||||||||||||||||||||||||:!! ! ||| !||||||! ! AspLeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyrCys 45909 : GACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTACTGT : 45850 167 : TyrIleGluAsnGluAlaAspTyrTyrTyrProIleLeuIlePheSerIleValSerLeu : 186 |||.!! ||| !! !|||||||||||| !:!!:!! !:!!!!! !!.!!!!:!! TyrPhe---AsnProAspAspTyrTyrTyrTyrValValGlyTyrThrSerAlaCysIle 45849 : TACTTC---AATCCGGACGACTACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATA : 45793 187 : LeuThrAlaMetCysValPheIleAlaThrAspThrMetLeuIleTyrIleValGln : 205 !! !||| !|||.!!:!!!.!.!!|||! !!!::!!|||:!!:!!|||!:: GlyMetAlaGlyLeuValLeuValGlyAlaAspIleIleMetIleHisLeuValArg 45792 : GGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATTATGATACATCTTGTACGT : 45734 vulgar: AfOr106 126 205 . KQ414772.1 45967 45733 - 130 M 42 126 G 1 0 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45734 45967 130 - . gene_id 16 ; sequence AfOr106 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45734 45967 . - . KQ414772.1 exonerate:protein2genome:local exon 45734 45967 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 45734 45967 130 - . alignment_id 16 ; Query AfOr106 ; Align 45968 127 126 ; Align 45842 170 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 329 -> 374 Target range: 31898 -> 31763 330 : TyrGluProTyrTrpTyrAsnLeuGlnSerLysMetGlnAlaMetPheValLeuIleLeu : 349 |||... !! ||||||!!. ! ! !!!:!! !|||.!!:!!!:!! !||| !||| TyrSerAlaThrTrpTyrLysSerThrProArgThrGlnThrLeuTyrGlyLeuAlaLeu 31898 : TACAGTGCAACGTGGTACAAGAGTACGCCGAGAACGCAAACTTTGTACGGGCTAGCTTTG : 31841 350 : ArgArgAsnLeuAsnProProLeuLeuThrAlaGlyGlyLeuValGlnLeuAsnLeuAsn : 369 ||||||..!|||!.!||||||:!!||||||||||||||||||:!!..!|||||||||.!. ArgArgGlyLeuThrProProValLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGlu 31840 : AGAAGAGGCTTGACTCCACCGGTGCTCACAGCTGGAGGATTGATTTCGTTGAATCTGGAG : 31781 370 : ThrPheAlaLysVal : 374 |||||||||:!!||| ThrPheAlaGluVal 31780 : ACTTTTGCTGAGGTG : 31764 vulgar: AfOr106 329 374 . KQ414772.1 31898 31763 - 128 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 31764 31898 128 - . gene_id 17 ; sequence AfOr106 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 31764 31898 . - . KQ414772.1 exonerate:protein2genome:local exon 31764 31898 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 31764 31898 128 - . alignment_id 17 ; Query AfOr106 ; Align 31899 330 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 329 -> 361 Target range: 23236 -> 23140 330 : TyrGluProTyrTrpTyrAsnLeuGlnSerLysMetGlnAlaMetPheValLeuIleLeu : 349 |||... !! ||||||||| ! ! !!|||:!!||||||:!!!:!|||||| !||| TyrSerAlaThrTrpTyrAsnGlyThrProLysValGlnAlaLeuTyrValLeuAlaLeu 23236 : TACAGCGCTACATGGTACAACGGTACACCGAAAGTGCAAGCTTTGTACGTGCTAGCTTTG : 23179 350 : ArgArgAsnLeuAsnProProLeuLeuThrAlaGly : 361 ||||||||||||!.!|||||||||:!!||||||||| ArgArgAsnLeuThrProProLeuIleThrAlaGly 23178 : AGAAGGAACTTGACTCCACCGCTGATCACTGCCGGA : 23141 vulgar: AfOr106 329 361 . KQ414772.1 23236 23140 - 108 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 23141 23236 108 - . gene_id 18 ; sequence AfOr106 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 23141 23236 . - . KQ414772.1 exonerate:protein2genome:local exon 23141 23236 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 23141 23236 108 - . alignment_id 18 ; Query AfOr106 ; Align 23237 330 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 285 Query range: 286 -> 398 Target range: 21425 -> 19369 287 : LeuAlaPheThrGlyThrPheValLysLeuSerSerMetGluValAsnValArgPhe > : 306 :!!||| ..!||||||||||||||||||.!!!:! :::||| ValAlaAlaValGlyThrPheValLysLeuGlyAsnTyrIleIleAsnGluThrLys++ 21425 : GTGGCAGCGGTTGGGACGTTCGTGAAACTGGGTAATTACattataaacgaaacgaaggt. : 21366 307 : >>> Target Intron 1 >>>> PheThrPheCysAlaPheThrValGlyGlnLeuT : 317 1522 bp !!..! ! ! .!!||| !||||||||| ! ++ValValHisGlyThrPhePheValGlyGlnAlaP 21365 : ........................agGTTGTGCACGGAACGTTTTTCGTCGGCCAAGCGT : 19813 318 : hrHisLeuPhePheLeuThrIleMetGlyGlnPheLeuIleAsnAlaAsnAspGluIleP : 337 !|||:!!|||||||||!.!:!!..!|||||||||:!!||||||||| !||||||:!:! heHisValPhePheLeuAsnValGlnGlyGlnPheValIleAsnAlaPheAspGluLeuT 19812 : TTCACGTTTTCTTTTTGAACGTCCAGGGACAATTTGTGATAAACGCATTCGACGAACTGT : 19753 338 : heLysThr{Va} >>>> Target Intron 2 >>>> {l}TyrGluAlaTyrTrpT : 346 :! ! ! !{:!} 113 bp {!}||||||:!! ! |||| yrAspLys{Il}++ ++{e}TyrGluSerGlnTrpT 19752 : ACGACAAG{AT}gt.........................ag{A}TACGAATCGCAGTGGT : 19613 347 : yrAsnGlySerSerArgThrGlnSerLeuTyrIleLeuValLeuArgLysCysLeuSerP : 366 ||||| !!!! !!|||||||||:!!||||||:!!|||!.!||||||!..||||||!:!| yrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeuArgSerCysLeuAsnP 19612 : ATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTGAGAAGCTGCCTAAACC : 19553 367 : roProLysLeuThrGlyGlyGlyLeuValAlaLeuAsnLeuAspSerPheLeuGln >> : 385 ||||| !||||||!.!||||||:!!..!.!!||||||||| |||||| !:!! roProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSerPheAlaGlu++ 19552 : CACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATCGTTCGCAGAGgt.. : 19494 386 : >> Target Intron 3 >>>> IleLeuLysAlaSerPheSerTyrTyrThrValPh : 396 85 bp |||:!!||||||||| !!|||||||||||||||.! ++IleIleLysAlaSerValSerTyrTyrThrValMe 19493 : .......................agATCATCAAAGCATCTGTTTCCTACTACACGGTGAT : 19378 397 : eArgSer : 398 .!:!!!! tGlnThr 19377 : GCAGACC : 19370 vulgar: AfOr111 286 398 . KQ414772.1 21425 19369 - 285 M 19 57 5 0 2 I 0 1518 3 0 2 M 34 102 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 44 132 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 19370 21425 285 - . gene_id 1 ; sequence AfOr111 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 21369 21425 . - . KQ414772.1 exonerate:protein2genome:local exon 21369 21425 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 21367 21368 . - . intron_id 1 ; splice_site "gt" KQ414772.1 exonerate:protein2genome:local intron 19847 21368 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 19847 19848 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 19743 19846 . - . KQ414772.1 exonerate:protein2genome:local exon 19743 19846 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 19741 19742 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 19630 19742 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 19630 19631 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 19497 19629 . - . KQ414772.1 exonerate:protein2genome:local exon 19497 19629 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 19495 19496 . - . intron_id 3 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 19412 19496 . - . intron_id 3 KQ414772.1 exonerate:protein2genome:local splice3 19412 19413 . - . intron_id 2 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 19370 19411 . - . KQ414772.1 exonerate:protein2genome:local exon 19370 19411 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 19370 21425 285 - . alignment_id 1 ; Query AfOr111 ; Align 21426 287 57 ; Align 19847 306 102 ; Align 19629 341 132 ; Align 19412 385 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 270 Query range: 284 -> 389 Target range: 12873 -> 12496 285 : IleValLeuAlaPheThrGlyThrPheValLysLeuSerSerMetGluValAsnValArg : 304 :!::!!:!! ! ||| !:!!!:: !:!!:!!|||!:! !|||:!!|||!.!..! LeuIleIleLeuArgThrIleSerTrpLysGlnValSerAsnSerGluIleAsnAlaGlu 12873 : CTGATCATCCTCAGAACAATTTCTTGGAAACAGGTGTCGAACTCGGAGATTAATGCGGAG : 12816 305 : PhePheThrPheCysAlaPheThrValGlyGlnLeuThrHisLeuPhePheLeuThrIle : 324 ||| !! ! !|||.!!|||! !||| !||||||..!|||:!!.!!!:!||||||:!! PheAlaLysAspCysThrPheIleValIleGlnLeuValHisIleLeuTyrLeuThrLeu 12815 : TTTGCCAAGGATTGCACATTTATCGTGATTCAATTGGTACACATACTTTACCTAACTCTT : 12756 325 : MetGlyGlnPheLeuIleAsnAlaAsnAspGluIlePheLysThr{Va} >>>> Targ : 340 ...|||||||||:!!|||:!!||||||!!:|||||||||:!!:!!{:!} GlnGlyGlnPheValIleAspAlaAsnGluGluIlePheGluSer{Il}++ 12755 : CAAGGACAATTCGTGATCGACGCGAACGAGGAAATCTTCGAATCG{AT}gt......... : 12704 341 : et Intron 1 >>>> {l}TyrGluAlaTyrTrpTyrAsnGlySerSerArgThrGln : 353 62 bp {!}|||...|||! |||||||||.!!..!!.!||||||||| ++{e}TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGln 12703 : ................ag{A}TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAA : 12607 354 : SerLeuTyrIleLeuValLeuArgLysCysLeuSerProProLysLeuThrGlyGlyGly : 373 ||||||!:!:!!|||!.!||||||!!.||||||||| !!|||:!!:!!|||!.!|||||| SerLeuPheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGly 12606 : TCGTTGTTTGTATTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGA : 12547 374 : LeuValAlaLeuAsnLeuAspSerPheLeuGlnIleLeuLysAlaSer : 389 |||:!!.!!:!!||||||.!.||||||! !:!!:!! !!..:!!||| LeuIleThrMetAsnLeuGlnSerPheSerGluValThrSerSerSer 12546 : CTAATTACAATGAACTTGCAAAGTTTCTCAGAGGTAACAAGTTCATCG : 12497 vulgar: AfOr111 284 389 . KQ414772.1 12873 12496 - 270 M 55 165 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 12497 12873 270 - . gene_id 2 ; sequence AfOr111 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 12707 12873 . - . KQ414772.1 exonerate:protein2genome:local exon 12707 12873 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 12705 12706 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 12645 12706 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 12645 12646 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 12497 12644 . - . KQ414772.1 exonerate:protein2genome:local exon 12497 12644 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 12497 12873 270 - . alignment_id 2 ; Query AfOr111 ; Align 12874 285 165 ; Align 12644 341 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 263 Query range: 131 -> 265 Target range: 38048 -> 37574 132 : SerThrValTyrGluValSerIlePhePheCysGlyPheMetPheLeuLeuIleProSer : 151 ||| ! !!:! !|||!:! !.!.|||||| ! !!!!:||| !! !:!: !!! ! SerLeuTyrPheThrValAsnGlyLeuPheCysTyrValIlePheThrSerValAlaIle 38048 : TCTCTGTATTTCACAGTAAACGGACTGTTTTGCTACGTTATATTCACCTCAGTGGCGATT : 37991 152 : IleProProIleLeuAsnIleIleSerProLeuAsnValSerArgGlyArgGluLeuIle : 171 ! |||! !:!!|||:!!:!!||||||||| !|||! !||||||||| !!!:!!!||| ThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValAspPheIle 37990 : ACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTCATT : 37931 172 : TyrProSerTyrTyrPheValAspGluGluLysTyrTyrTyrProIleLeuMetHisMet : 191 ||||||:!!|||||| !:!!|||||||||:!!:!!|||||| !:!::!! |||||| TyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHisMet 37930 : TATCCTGCATACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCACATG : 37871 192 : IleAlaValAlaLeuIleLeuThrSerValTyrValAlaCysAspThrTyrLeuValTyr : 211 :!!..!||| ! !:!!:!! !! !||||||:!!:!!||||||||| !! !:!! ! LeuCysValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMetSer 37870 : CTCTGCGTGATAACTGTAGTGTTTTTCGTGTACATCTCCTGTGACACGATCTACATGAGC : 37811 212 : IleValHisHisGlyCysAlaLeuLeuAlaIleSer{Gl} >>>> Target Intron : 224 ||||||!!.|||!.!|||!.!|||||| !:!!|||{||} 75 bp IleValGlnHisAlaCysGlyLeuLeuAsnValSer{Gl}++ 37810 : ATCGTTCAACACGCGTGCGGATTACTGAACGTCTCT{GG}gt.................. : 37768 225 : 1 >>>> {y}TyrArgPheLysHisAlaValAspAspIleLysLeuCysGlyGluAsp : 240 {|}:!! !!|||||| ||||||!!: !:!: :!! ! !.!.!!: ++{y}HisCysPheLysTrpAlaValGluThrVal---IleThrLysAsnGlu 37767 : .......ag{G}CATTGCTTCAAGTGGGCAGTGGAAACTGTG---ATTACCAAGAACGAG : 37652 241 : TyrIleAspSerLeuMetAspGluThrTyrThrLysValArgGlnSerIleLysAlaHis : 260 ! !!: !!!!! !:!!|||!!:||||||! !|||||||||!!.||||||||||||||| LysMetHisThrGluValAspAspThrTyrArgLysValArgHisSerIleLysAlaHis 37651 : AAGATGCACACCGAAGTGGACGACACGTATAGAAAAGTGCGCCATTCGATCAAGGCTCAT : 37592 261 : LysThrAlaValGlu : 265 :!! !|||:!!||| GlnHisAlaMetGlu 37591 : CAACACGCTATGGAG : 37575 vulgar: AfOr111 131 265 . KQ414772.1 38048 37574 - 263 M 92 276 S 0 2 5 0 2 I 0 71 3 0 2 S 1 1 M 10 30 G 1 0 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37575 38048 263 - . gene_id 3 ; sequence AfOr111 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 37771 38048 . - . KQ414772.1 exonerate:protein2genome:local exon 37771 38048 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 37769 37770 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 37696 37770 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 37696 37697 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 37575 37695 . - . KQ414772.1 exonerate:protein2genome:local exon 37575 37695 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 37575 38048 263 - . alignment_id 3 ; Query AfOr111 ; Align 38049 132 276 ; Align 37695 225 30 ; Align 37665 236 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 238 Query range: 130 -> 267 Target range: 42754 -> 42264 131 : LeuSerThrValTyrGluValSerIlePhePheCysGlyPheMetPheLeuLeuIlePro : 150 :::||| :::::: |||!!! !.!.! !||| ! ||||||:!!! ! ||| ValSerPheIlePheThrValThrGlyIleCysCysPheThrMetPheIleSerAlaPro 42754 : gtttctttcattttcacagTAACTGGAATATGTTGCTTCACAATGTTTATCTCTGCGCCT : 42697 151 : SerIleProProIleLeuAsnIleIleSerProLeuAsnValSerArgGlyArgGluLeu : 170 ! !||||||! !:!!! !:!!:!!!!:! ! !! !|||! !|||||| ! !! !!! TyrIleProHisValTyrAspValMetLeuSerLysAsnGluSerArgLysLeuGlyPhe 42696 : TATATACCGCATGTATATGATGTTATGTTATCGAAAAACGAGTCACGAAAGTTGGGTTTC : 42637 171 : IleTyrProSerTyrTyrPheValAspGluGluLysTyrTyrTyrProIleLeuMetHis : 190 |||||||||:!!|||||| !||||||:!!!!:|||||||||||| !|||:!! ||| IleTyrProAlaTyrTyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAlaHis 42636 : ATTTACCCTGCCTATTATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCTCAC : 42577 191 : MetIleAlaValAlaLeuIleLeuThrSerValTyrValAlaCysAspThrTyrLeuVal : 210 |||! !:!!! !!.!|||:!::!! !! !..!!:!:!!:!!||||||||| !! !:!! MetThrSerGlyGlyLeuValValPhePheThrPheIleSerCysAspThrIleTyrMet 42576 : ATGACATCTGGGGGCTTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTACATG : 42517 211 : TyrIleValHisHisGlyCysAlaLeuLeuAlaIleSer{Gl} >>>> Target Int : 224 !!||||||!!.|||!.!|||!.!|||||| !||||||{||} 79 bp AsnIleValGlnHisAlaCysGlyLeuLeuLeuIleSer{Gl}++ 42516 : AATATCGTGCAACACGCGTGCGGATTGTTGTTGATTTCT{GG}gt............... : 42471 225 : ron 1 >>>> {y}TyrArgPheLysHisAlaValAspAspIleLysLeuCysGlyGlu : 239 {|}:!!||||||||| |||:!!!!:!!:!!: ...||| ++{y}HisArgPheLysTrpAlaIleGluGluMetGlyGlyAsnAsnGlu 42470 : ..........ag{C}CACCGTTTCAAGTGGGCAATCGAAGAGATGGGTggtaacaatgaa : 42351 240 : AspTyrIleAspSerLeuMetAspGluThrTyrThrLysValArgGlnSerIleLysAla : 259 !!!:!!:!:!!:! ! !:!!! !!:!||| !!||||||:!!|||||| LysLeuAsnProThrMetLeuGluGlyIleHisArgArgValCysGlnSerValLysAla 42350 : aaattgaatcccACGATGCTAGAGGGTATACACAGAAGAGTGTGTCAATCGGTTAAGGCA : 42291 260 : HisLysThrAlaValGluTyrVal : 267 |||:!! !|||:!!:!!! ||| HisGlnHisAlaIleLysSerVal 42290 : CATCAGCACGCCATAAAGTCAGTA : 42265 vulgar: AfOr111 130 267 . KQ414772.1 42754 42264 - 238 M 93 279 S 0 2 5 0 2 I 0 75 3 0 2 S 1 1 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42265 42754 238 - . gene_id 4 ; sequence AfOr111 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 42474 42754 . - . KQ414772.1 exonerate:protein2genome:local exon 42474 42754 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 42472 42473 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 42395 42473 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 42395 42396 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 42265 42394 . - . KQ414772.1 exonerate:protein2genome:local exon 42265 42394 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42265 42754 238 - . alignment_id 4 ; Query AfOr111 ; Align 42755 131 279 ; Align 42394 225 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 233 Query range: 136 -> 246 Target range: 14157 -> 13827 137 : ValSerIlePhePheCysGlyPheMetPheLeuLeuIleProSerIleProProIleLeu : 156 |||!:! .!! !!|||! !.!!:!!|||:!! !! ||| !! !|||! !|||||| ValAsnAlaIleValCysValIleLeuPheValThrThrProValThrProHisIleLeu 14157 : GTGAACGCGATCGTTTGTGTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATTTTG : 14100 157 : AsnIleIleSerProLeuAsnValSerArgGlyArgGluLeuIleTyrProSerTyrTyr : 176 :!!|||:!! !||| !|||! !||||||! ! !! !! !|||||||||:!!|||||| AspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyr 14099 : GACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTAT : 14040 177 : PheValAspGluGluLysTyrTyrTyrProIleLeuMetHisMetIleAlaValAlaLeu : 196 |||..!||||||.!.|||||| !! !|||:!!! !|||||| :!!||| !||| PheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeu 14039 : TTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTT : 13980 197 : IleLeuThrSerValTyrValAlaCysAspThrTyrLeuValTyrIleValHisHisGly : 216 :!::!! !! !||||||||||||||||||||| !! !:!!|||:!!|||!!.|||||| ValValPheTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGly 13979 : GTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGC : 13920 217 : CysAlaLeuLeuAlaIleSerGlyTyrArgPheLysHisAlaValAspAspIleLysLeu : 236 |||!.!|||||||||:!:|||||| :::...::: ... :::... CysGlyLeuLeuAlaValSerGly***LysIleArgSerLysAsnSer***LeuAsnPro 13919 : TGCGGATTGTTGGCCGTGTCCGGgtaaaaaattcgatcgaaaaattcgtagcttaaccct : 13860 237 : CysGlyGluAspTyrIleAspSerLeuMet : 246 ... :!! ! ||||||!!!|||!!: PheSerAlaAsnLysIleAspThrLeuIle 13859 : ttcagtgcCAACAAAATCGATACGCTAATT : 13828 vulgar: AfOr111 136 246 . KQ414772.1 14157 13827 - 233 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13828 14157 233 - . gene_id 5 ; sequence AfOr111 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13828 14157 . - . KQ414772.1 exonerate:protein2genome:local exon 13828 14157 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13828 14157 233 - . alignment_id 5 ; Query AfOr111 ; Align 14158 137 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 212 Query range: 130 -> 224 Target range: 29637 -> 29355 131 : LeuSerThrValTyrGluValSerIlePhePheCysGlyPheMetPheLeuLeuIlePro : 150 ...|||::: ::! !!.!!:! !.!!|||||| ! !!!!:||| !! !:!: !! PheSerSerArgPheThrAlaAsnGlyIlePheCysTyrValIlePheThrSerValAla 29637 : ttttcttcacgttTCACAGCAAATGGAATCTTCTGCTACGTTATATTCACCTCAGTGGCG : 29580 151 : SerIleProProIleLeuAsnIleIleSerProLeuAsnValSerArgGlyArgGluLeu : 170 ! !! !|||! !:!!|||:!!:!!||||||||| !|||! !||||||||| !! !!! IleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValGlyPhe 29579 : ATAACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTGGGCTTC : 29520 171 : IleTyrProSerTyrTyrPheValAspGluGluLysTyrTyrTyrProIleLeuMetHis : 190 |||||||||:!!|||||| !:!!|||||||||:!!:!!|||||| !:!::!! ||| IleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrTyrLeuMetGlyHis 29519 : ATTTATCCTGCATACTACGGTCTTGACGAAGAGGAGCATTACTACTATCTGATGGGTCAC : 29460 191 : MetIleAlaValAlaLeuIleLeuThrSerValTyrValAlaCysAspThrTyrLeuVal : 210 |||:!!:!!||| ! !:!!:!! !! !||||||:!!:!!||||||||| !! !:!! MetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMet 29459 : ATGCTTTCCGTGATAACCGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATCTATATG : 29400 211 : TyrIleValHisHisGlyCysAlaLeuLeuAlaIleSerGly : 224 !!:!!|||!!.|||!.!|||!.!|||||| !:!!|||||| AsnValValGlnHisAlaCysGlyLeuLeuAsnValSerGly 29399 : AATGTCGTGCAACACGCGTGTGGATTATTGAACGTCTCTGGG : 29356 vulgar: AfOr111 130 224 . KQ414772.1 29637 29355 - 212 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29356 29637 212 - . gene_id 6 ; sequence AfOr111 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29356 29637 . - . KQ414772.1 exonerate:protein2genome:local exon 29356 29637 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 29356 29637 212 - . alignment_id 6 ; Query AfOr111 ; Align 29638 131 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 207 Query range: 139 -> 224 Target range: 24431 -> 24176 140 : PhePheCysGlyPheMetPheLeuLeuIleProSerIleProProIleLeuAsnIleIle : 159 .!!|||||| ! !!:!:||| ! !:!: !!! !! !|||! !:!!|||:!!:!!||| IlePheCysTyrValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIle 24431 : ATCTTCTGCTACGTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATT : 24374 160 : SerProLeuAsnValSerArgGlyArgGluLeuIleTyrProSerTyrTyrPheValAsp : 179 |||||| !|||! !||||||||| !! !!!|||||||||:!! !!||| !|||||| SerProLysAsnGluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAsp 24373 : TCGCCGAAAAACGAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGAC : 24314 180 : GluGluLysTyrTyrTyrProIleLeuMetHisMetIleAlaValAlaLeuIleLeuThr : 199 ||||||:!!:!!|||||| !:!::!! ||||||:!!:!!||| ! !:!!:!! ! GluGluGluHisTyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhe 24313 : GAAGAGGAGCATTACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTT : 24254 200 : SerValTyrValAlaCysAspThrTyrLeuValTyrIleValHisHisGlyCysAlaLeu : 219 ! !||||||:!!:!!||||||||| !! !:!! !!||||||!!.|||!.!|||!.!||| PheValTyrIleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeu 24253 : TTCGTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTA : 24194 220 : LeuAlaIleSerGly : 224 ||| !:!!|||||| LeuAsnLeuSerGly 24193 : TTGAACCTCTCTGGG : 24177 vulgar: AfOr111 139 224 . KQ414772.1 24431 24176 - 207 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24177 24431 207 - . gene_id 7 ; sequence AfOr111 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24177 24431 . - . KQ414772.1 exonerate:protein2genome:local exon 24177 24431 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 24177 24431 207 - . alignment_id 7 ; Query AfOr111 ; Align 24432 140 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 204 Query range: 125 -> 224 Target range: 18099 -> 17802 126 : LysArgAlaLysValLeuSerThrValTyrGluValSerIlePhePheCysGlyPheMet : 145 |||::: ! !..!|||..! !:!!!:! !|||!:! !:!.!!|||..!|||:!! LysGlnLeuAlaThrLeuAspArgIlePheProValAsnAlaTyrIleCysSerPheLeu 18099 : aaacaattAGCAACTCTCGATCGGATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTG : 18042 146 : PheLeuLeuIleProSerIleProProIleLeuAsnIleIleSerProLeuAsnValSer : 165 |||:!!! !:!:|||!!! !!! !:!::!!||| !!.! !!! !|||:!!!!! PheIleGlnValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIleThr 18041 : TTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACG : 17982 166 : ArgGlyArgGluLeuIleTyrProSerTyrTyrPheValAspGluGluLysTyrTyrTyr : 185 ! !.!! !:!!!!!:!! |||.!!||||||||||||||||||! !:!!||||||||| ProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyrTyr 17981 : CCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTAT : 17922 186 : ProIleLeuMetHisMetIleAlaValAlaLeuIleLeuThrSerValTyrValAlaCys : 205 !|||:!!:!:||| ! ..!..! !||||||:!!..! !|||||| !|||||| TyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCys 17921 : TACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 17862 206 : AspThrTyrLeuValTyrIleValHisHisGlyCysAlaLeuLeuAlaIleSerGly : 224 |||||| !! !:!! :!:|||!!.||| !|||!.!|||!!!|||:!::!!||| AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly 17861 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 17803 vulgar: AfOr111 125 224 . KQ414772.1 18099 17802 - 204 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17803 18099 204 - . gene_id 8 ; sequence AfOr111 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17803 18099 . - . KQ414772.1 exonerate:protein2genome:local exon 17803 18099 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17803 18099 204 - . alignment_id 8 ; Query AfOr111 ; Align 18100 126 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 198 Query range: 138 -> 223 Target range: 20577 -> 20322 139 : IlePhePheCysGlyPheMetPheLeuLeuIleProSerIleProProIleLeuAsnIle : 158 :!:|||.!! !!.! !!!:||||||! !:!:|||! ! !||| !||||||:!!||| LeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAspIle 20577 : TTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATT : 20520 159 : IleSerProLeuAsnValSerArgGlyArgGluLeuIleTyrProSerTyrTyrPheVal : 178 !:!!||||||||| !!!!||| !|||! !!!!:!!||||||:!!||||||!:::!! TyrAlaProLeuAsnLysThrArgLysArgValPheValTyrProAlaTyrTyrTrpMet 20519 : TACGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATG : 20460 179 : AspGluGluLysTyrTyrTyrProIleLeuMetHisMetIleAlaValAlaLeuIleLeu : 198 ||| |||:!!|||||| !!!::!!!!:|||!!:!!: !|||!.!:!!!!::!! AspProGluGlnTyrTyrMetIleMetIleIleHisIleMetPheValValIleMetVal 20459 : GATCCTGAGCAATACTACATGATAATGATAATACACATAATGTTCGTGGTGATCATGGTC : 20400 199 : ThrSerValTyrValAlaCysAspThrTyrLeuValTyrIleValHisHisGlyCysAla : 218 ! !:!!!:! !|||||||||! ! !!! !|||||| !|||!!.|||!.!|||!.! CysValIlePheCysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGly 20399 : TGTGTCATATTCTGTGCTTGCGACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGC : 20340 219 : LeuLeuAlaIleSer : 223 |||||||||:!!!!! LeuLeuAlaValThr 20339 : TTATTGGCTGTCACC : 20323 vulgar: AfOr111 138 223 . KQ414772.1 20577 20322 - 198 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20323 20577 198 - . gene_id 9 ; sequence AfOr111 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20323 20577 . - . KQ414772.1 exonerate:protein2genome:local exon 20323 20577 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20323 20577 198 - . alignment_id 9 ; Query AfOr111 ; Align 20578 139 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 160 Query range: 333 -> 385 Target range: 37064 -> 36908 334 : AspGluIlePheLysThrValTyrGluAlaTyrTrpTyrAsnGlySerSerArgThrGln : 353 .!.|||:!:||| ! !|||...||| ! |||||||||.!!||| !!||||||||| GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 37064 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 37007 354 : SerLeuTyrIleLeuValLeuArgLysCysLeuSerProProLysLeuThrGlyGlyGly : 373 !!!||||||:!:|||!.!||||||!:! !!|||!!!|||||| !||||||!.!|||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 37006 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 36947 374 : LeuValAlaLeuAsnLeuAspSerPheLeuGlnIle : 385 |||:!!:!!|||||||||!!:!!!||| !:::::: LeuIleSerLeuAsnLeuGluThrPheAlaGluVal 36946 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGaggta : 36909 vulgar: AfOr111 333 385 . KQ414772.1 37064 36908 - 160 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 36909 37064 160 - . gene_id 10 ; sequence AfOr111 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 36909 37064 . - . KQ414772.1 exonerate:protein2genome:local exon 36909 37064 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 36909 37064 160 - . alignment_id 10 ; Query AfOr111 ; Align 37065 334 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 160 Query range: 333 -> 385 Target range: 35630 -> 35474 334 : AspGluIlePheLysThrValTyrGluAlaTyrTrpTyrAsnGlySerSerArgThrGln : 353 .!.|||:!:||| ! !|||...||| ! |||||||||.!!||| !!||||||||| GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 35630 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 35573 354 : SerLeuTyrIleLeuValLeuArgLysCysLeuSerProProLysLeuThrGlyGlyGly : 373 !!!||||||:!:|||!.!||||||!:! !!|||!!!|||||| !||||||!.!|||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 35572 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 35513 374 : LeuValAlaLeuAsnLeuAspSerPheLeuGlnIle : 385 |||:!!:!!|||||||||!!:!!!||| !:!!:!! LeuIleSerLeuAsnLeuGluThrPheAlaGluVal 35512 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGAGGTA : 35475 vulgar: AfOr111 333 385 . KQ414772.1 35630 35474 - 160 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 35475 35630 160 - . gene_id 11 ; sequence AfOr111 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 35475 35630 . - . KQ414772.1 exonerate:protein2genome:local exon 35475 35630 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 35475 35630 160 - . alignment_id 11 ; Query AfOr111 ; Align 35631 334 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 149 Query range: 340 -> 385 Target range: 41380 -> 41245 341 : TyrGluAlaTyrTrpTyrAsnGlySerSerArgThrGlnSerLeuTyrIleLeuValLeu : 360 |||!!:||| |||||||||.!!!!! !!|||||||||!!!||||||!!:|||!.!||| TyrAspAlaValTrpTyrAsnSerThrProArgThrGlnThrLeuTyrMetLeuAlaLeu 41380 : TACGATGCAGTATGGTACAACAGTACGCCAAGAACGCAAACTTTGTACATGCTAGCTTTG : 41323 361 : ArgLysCysLeuSerProProLysLeuThrGlyGlyGlyLeuValAlaLeuAsnLeuAsp : 380 |||!:! !|||!!!|||||| !||||||!.!|||||||||::::::|||||||||::: ArgArgThrLeuThrProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGlu 41322 : AGGAGGACTTTAACTCCACCACTGCTCACTGCAGGAGGACtgatttcgttgaatttggaa : 41263 381 : SerPheLeuGlnIle : 385 :::||| !:!!:!! ThrPheSerLysVal 41262 : actttttcGAAGGTA : 41246 vulgar: AfOr111 340 385 . KQ414772.1 41380 41245 - 149 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 41246 41380 149 - . gene_id 12 ; sequence AfOr111 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 41246 41380 . - . KQ414772.1 exonerate:protein2genome:local exon 41246 41380 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 41246 41380 149 - . alignment_id 12 ; Query AfOr111 ; Align 41381 341 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 142 Query range: 333 -> 385 Target range: 28137 -> 27981 334 : AspGluIlePheLysThrValTyrGluAlaTyrTrpTyrAsnGlySerSerArgThrGln : 353 .!.:!!:!:||| ! !! !! ||| |||||||||.!!!!!|||||||||||| GlnLysLeuPheValArgArgCysAlaAlaThrTrpTyrAsnSerThrSerArgThrGln 28137 : CAGAAGTTGTTCGTTCGCAGATGCGCTGCAACATGGTACAACAGTACATCTAGAACGCAA : 28080 354 : SerLeuTyrIleLeuValLeuArgLysCysLeuSerProProLysLeuThrGlyGlyGly : 373 :!!||||||!!:|||!.!||||||!:! !|||!!!|||||| !:!!|||!.!|||||| AlaLeuTyrMetLeuAlaLeuArgArgAsnLeuThrProProLeuIleThrAlaGlyGly 28079 : GCTTTGTACATGCTAGCTTTGAGAAGGAACTTGACACCACCACTGATCACCGCCGGAGGA : 28020 374 : LeuValAlaLeuAsnLeuAspSerPheLeuGlnIle : 385 |||:!!:!!|||||||||!!:!!!||| !:!!:!! LeuIleSerLeuAsnLeuGluThrPheAlaGluVal 28019 : CTGATTTCCTTGAATTTGGAGACCTTCGCGGAGGTA : 27982 vulgar: AfOr111 333 385 . KQ414772.1 28137 27981 - 142 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 27982 28137 142 - . gene_id 13 ; sequence AfOr111 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 27982 28137 . - . KQ414772.1 exonerate:protein2genome:local exon 27982 28137 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 27982 28137 142 - . alignment_id 13 ; Query AfOr111 ; Align 28138 334 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 136 Query range: 340 -> 385 Target range: 16779 -> 16644 341 : TyrGluAlaTyrTrpTyrAsnGlySerSerArgThrGlnSerLeuTyrIleLeuValLeu : 360 ||||||:!!! ||||||!...!!||||||!:!||||||:!!||||||:!::!!!.!||| TyrGluSerLeuTrpTyrThrSerSerSerLysThrGlnAlaLeuTyrValValAlaLeu 16779 : TACGAATCATTATGGTACACAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCGTTA : 16722 361 : ArgLysCysLeuSerProProLysLeuThrGlyGlyGlyLeuValAlaLeuAsnLeuAsp : 380 |||!:! !|||!!!||| !! ||||||!.!|||||||||||| !||||||:!!.!. ArgArgAsnLeuThrProThrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMetGln 16721 : CGAAGAAACCTAACACCTACCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATGCAA : 16662 381 : SerPheLeuGlnIle : 385 |||||| !:!!:!! SerPheAlaGluVal 16661 : AGCTTCGCAGAGGTA : 16645 vulgar: AfOr111 340 385 . KQ414772.1 16779 16644 - 136 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 16645 16779 136 - . gene_id 14 ; sequence AfOr111 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 16645 16779 . - . KQ414772.1 exonerate:protein2genome:local exon 16645 16779 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 16645 16779 136 - . alignment_id 14 ; Query AfOr111 ; Align 16780 341 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 340 -> 385 Target range: 31898 -> 31763 341 : TyrGluAlaTyrTrpTyrAsnGlySerSerArgThrGlnSerLeuTyrIleLeuValLeu : 360 |||...||| ||||||!!..!!!!! !!|||||||||!!!|||||| |||!.!||| TyrSerAlaThrTrpTyrLysSerThrProArgThrGlnThrLeuTyrGlyLeuAlaLeu 31898 : TACAGTGCAACGTGGTACAAGAGTACGCCGAGAACGCAAACTTTGTACGGGCTAGCTTTG : 31841 361 : ArgLysCysLeuSerProProLysLeuThrGlyGlyGlyLeuValAlaLeuAsnLeuAsp : 380 |||!:! !!|||!!!|||||| !||||||!.!|||||||||:!!:!!|||||||||!!: ArgArgGlyLeuThrProProValLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGlu 31840 : AGAAGAGGCTTGACTCCACCGGTGCTCACAGCTGGAGGATTGATTTCGTTGAATCTGGAG : 31781 381 : SerPheLeuGlnIle : 385 !!!||| !:!!:!: ThrPheAlaGluVal 31780 : ACTTTTGCTGAGGTG : 31764 vulgar: AfOr111 340 385 . KQ414772.1 31898 31763 - 135 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 31764 31898 135 - . gene_id 15 ; sequence AfOr111 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 31764 31898 . - . KQ414772.1 exonerate:protein2genome:local exon 31764 31898 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 31764 31898 135 - . alignment_id 15 ; Query AfOr111 ; Align 31899 341 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 128 -> 213 Target range: 45991 -> 45736 129 : LysValLeuSerThrValTyrGluValSerIlePhePheCysGlyPheMetPheLeuLeu : 148 ...|||||||||! ! ! !..!|||!!!|||!:!.!! ! ! !! !:!!|||! ! ! SerValLeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThr 45991 : TCCGTTTTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACC : 45934 149 : IleProSerIleProProIleLeuAsnIleIleSerProLeuAsnValSerArgGlyArg : 168 ||| !|||||| !||||||:!!:!!|||||||||||||||! !|||||| !||| AlaProLeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArg 45933 : GCGCCCCTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGT : 45874 169 : GluLeuIleTyrProSerTyrTyrPheValAspGluGluLysTyrTyrTyrProIleLeu : 188 !! ! !||| !:!!|||! !!:! !!:!! !!!: ! ||||||||| !:!!:!! LeuTyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValVal 45873 : TTGTACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTG : 45814 189 : MetHisMetIleAlaValAlaLeuIleLeuThrSerValTyrValAlaCysAspThrTyr : 208 !:!!! ! !||| ! ! !!!: ! ! !||| !|||!.!..!|||! ! ! GlyTyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAlaAspIleIle 45813 : GGGTACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATT : 45754 209 : LeuValTyrIleVal : 213 :!!:!!:!!:!!||| MetIleHisLeuVal 45753 : ATGATACATCTTGTA : 45737 vulgar: AfOr111 128 213 . KQ414772.1 45991 45736 - 117 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45737 45991 117 - . gene_id 16 ; sequence AfOr111 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45737 45991 . - . KQ414772.1 exonerate:protein2genome:local exon 45737 45991 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45737 45991 117 - . alignment_id 16 ; Query AfOr111 ; Align 45992 129 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 340 -> 372 Target range: 23236 -> 23140 341 : TyrGluAlaTyrTrpTyrAsnGlySerSerArgThrGlnSerLeuTyrIleLeuValLeu : 360 |||...||| ||||||||||||!!! !!!:!..!|||:!!||||||:!:|||!.!||| TyrSerAlaThrTrpTyrAsnGlyThrProLysValGlnAlaLeuTyrValLeuAlaLeu 23236 : TACAGCGCTACATGGTACAACGGTACACCGAAAGTGCAAGCTTTGTACGTGCTAGCTTTG : 23179 361 : ArgLysCysLeuSerProProLysLeuThrGlyGly : 372 |||!:! !|||!!!|||||| !:!!|||!.!||| ArgArgAsnLeuThrProProLeuIleThrAlaGly 23178 : AGAAGGAACTTGACTCCACCGCTGATCACTGCCGGA : 23141 vulgar: AfOr111 340 372 . KQ414772.1 23236 23140 - 103 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 23141 23236 103 - . gene_id 17 ; sequence AfOr111 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 23141 23236 . - . KQ414772.1 exonerate:protein2genome:local exon 23141 23236 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 23141 23236 103 - . alignment_id 17 ; Query AfOr111 ; Align 23237 341 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr105 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 150 -> 242 Target range: 14154 -> 13881 151 : SerLeuLeuThrPheLeuValIlePheLeuSerLeuProLeuCysAsnProIleLeuAsp : 170 !:! !:!!..!! !:!!:!!:!:|||:!!!!! !|||:!! ! !||||||||| AsnAlaIleValCysValIleLeuPheValThrThrProValThrProHisIleLeuAsp 14154 : AACGCGATCGTTTGTGTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATTTTGGAC : 14097 171 : IleIleLeuProLeuAsnGluThrArgProArgGlnAsnIlePheAsnValAsnTyrIle : 190 |||:!!|||||| !||||||:!!||| ! ! ! !!|||!:! !.! ||| ! IleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAla---TyrTyr 14096 : ATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCC---TATTAT : 14040 191 : IleLeuAspAsnTyrGluTyrPheTyrIleValTyrValHisLeuSerCysSerAlaAla : 210 .!! !|||.!.:!!:!!||| ! !:!! !..!|||:!!:!!! ! ! ! ! PheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeu 14039 : TTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTT : 13980 211 : IleIleValIleIleIleIleSerValAspSerLeuTyrIleSerIleIleTyrHisAla : 230 :!::!: !! !:!: !:!!:!! !|||!!! !||||||! !:!!:!: ! |||!.! ValValPheTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGly 13979 : GTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGC : 13920 231 : CysGlyLeuPheAlaAlaCysGlyTyrGlnIleGln : 242 |||||||||!!.|||!.!! !||| :::|||::: CysGlyLeuLeuAlaValSerGly***LysIleArg 13919 : TGCGGATTGTTGGCCGTGTCCGGgtaaaaaattcga : 13882 vulgar: AfOr105 150 242 . KQ414772.1 14154 13881 - 132 M 37 111 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13882 14154 132 - . gene_id 1 ; sequence AfOr105 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13882 14154 . - . KQ414772.1 exonerate:protein2genome:local exon 13882 14154 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 13882 14154 132 - . alignment_id 1 ; Query AfOr105 ; Align 14155 151 111 ; Align 14044 189 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr105 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 129 Query range: 156 -> 235 Target range: 20562 -> 20328 157 : ValIlePheLeuSerLeuProLeuCysAsnProIleLeuAspIleIleLeuProLeuAsn : 176 !.!|||||||||!!!:!!|||!!!... !|||||||||||| ! !||||||||| AlaIlePheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsn 20562 : GCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAAC : 20505 177 : GluThrArgProArgGlnAsnIlePheAsnValAsnTyrIleIleLeuAspAsnTyrGlu : 196 :!!|||||| !||| ! !:!!!:! !.! ||| ! :!!||| ! ! :!! LysThrArgLysArgValPheValTyrProAla---TyrTyrTrpMetAspProGluGln 20504 : AAAACGAGAAAACGTGTGTTCGTTTATCCAGCC---TATTACTGGATGGATCCTGAGCAA : 20448 197 : TyrPheTyrIleValTyrValHisLeuSerCysSerAlaAlaIleIleValIleIleIle : 216 |||!:! |||:!! :!!|||:!!! !! ! !!.! !!!::!! !:!!|||.!! TyrTyrMetIleMetIleIleHisIleMetPheValValIleMetValCysValIlePhe 20447 : TACTACATGATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTC : 20388 217 : IleSerValAspSerLeuTyrIleSerIleIleTyrHisAlaCysGlyLeuPheAla : 235 !:!! !|||! ! !|||:!:! ! !:!: ! |||||||||||||||!!.||| CysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAla 20387 : TGTGCTTGCGACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCT : 20329 vulgar: AfOr105 156 235 . KQ414772.1 20562 20328 - 129 M 31 93 G 1 0 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20329 20562 129 - . gene_id 2 ; sequence AfOr105 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20329 20562 . - . KQ414772.1 exonerate:protein2genome:local exon 20329 20562 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 20329 20562 129 - . alignment_id 2 ; Query AfOr105 ; Align 20563 157 93 ; Align 20470 189 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr105 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 187 -> 238 Target range: 17955 -> 17802 188 : AsnTyrIleIleLeuAspAsnTyrGluTyrPheTyrIleValTyrValHisLeuSerCys : 207 ...||| !.!!:!!|||.!. ||||||!:!||| !:!! :!!||| !!!!||| GlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCys 17955 : GGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGC : 17898 208 : SerAlaAlaIleIleValIleIleIleIleSerValAspSerLeuTyrIleSerIleIle : 227 !!! ! !|||:!!|||:!::!: ! !:!! !|||!!! !|||!!: !:!::!: ThrIleLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuVal 17897 : ACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTG : 17838 228 : TyrHisAlaCysGlyLeuPheAlaAlaCysGly : 238 ! |||.!!|||||||||||||||!.!..!||| GlnHisThrCysGlyLeuPheAlaValAlaGly 17837 : CAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 17803 vulgar: AfOr105 187 238 . KQ414772.1 17955 17802 - 122 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17803 17955 122 - . gene_id 3 ; sequence AfOr105 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17803 17955 . - . KQ414772.1 exonerate:protein2genome:local exon 17803 17955 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17803 17955 122 - . alignment_id 3 ; Query AfOr105 ; Align 17956 188 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr121 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 330 -> 380 Target range: 1345564 -> 1345714 331 : SerGluGluIleHisAsnAlaAlaTyrGluCysGluTrpValSerLeuLysTyrTh : 349 |||...|||!!:!!..!.|||..!||| !!.!.||| !..!||| ! !!! SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 350 : rLysAlaLysSerLeuIleIleIleMetAlaArgSerLysLysProLeuTyrLeuT : 368 ! ! .!!::!|||||||||.!! !!!:|||||||||:!!||||||! !||||||| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 369 : hrAlaGlyLysLeuPheProValThrMetLeuThrPhe : 380 |||||||||||!!!!:! ! !!:!!:!: !|||||| hrAlaGlyLysPheTyrValPheSerLeuGluThrPhe 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTC : 1345714 vulgar: AfOr121 330 380 . KQ414782.1 1345564 1345714 + 104 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345714 104 + . gene_id 1 ; sequence AfOr121 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345714 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345714 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345714 104 + . alignment_id 1 ; Query AfOr121 ; Align 1345565 331 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 458 Query range: 118 -> 388 Target range: 14218 -> 12391 119 : ValPhePheIleLeuIleTyrValValAsnAlaTyrPheCysSerIleLeuPheLeuLeu : 138 ..!!:!.!!:!! ! !! :!!!.!|||||| ! !!||| !|||||||||:!!! ! ThrTyrIleValLysTyrSerIleAlaAsnAlaIleValCysValIleLeuPheValSer 14218 : ACGTACATTGTCAAATATTCGATAGCGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCG : 14161 139 : LeuProPheThrProIleLeuLeuAspIlePheIleProLeuAsnGluSerArgProArg : 158 !||| ! |||||| !:!!|||||||||!!.:!!||| !|||||||||||| ! ! ThrProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspVal 14160 : ACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTA : 14101 159 : ValGlnMetTyrProAlaTyrTyrTyrIleGluAsnGluAlaAspTyrTyrTyrProIle : 178 !.! ! !!:|||||||||||||||!:!! !!!: ||| ! ! ||| !! !||| AlaTyrIleTyrProAlaTyrTyrPheThrAsp---GluHisLysTyrAspValTyrIle 14100 : GCGTACATTTATCCGGCCTATTATTTCACCGAC---GAGCATAAGTACGACGTGTACATA : 14044 179 : LeuIlePheSerIleValSerLeuLeuThrAlaMetCysValPheIleAlaThrAspThr : 198 :!!! !! ! ! !:!!|||..!!.!.!.! !|||!:!:!!||| !|||||| IleThrHisMetAlaSerValIleLeuValValPheTyrValTyrValAlaCysAspThr 14043 : ATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACC : 13984 199 : MetLeuIleTyrIleValGlnHisAlaCysGlyLeuLeuAlaLeuAla{Gl} >>>> T : 215 ! ! !||||||:!!|||||||||!.!|||||||||||||||:!!:!!{||} SerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSer{Gl}++ 13983 : AGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCC{GG}gt...... : 13929 216 : arget Intron 1 >>>> {y}HisArgPheArgAsnSerLeuAsnAspLeuTyrSer : 227 266 bp {|}:!!|||!:!!:! !:!!:!! !!:|||! !||| ++{y}TyrArgTyrLysCysAlaIleValGluLeuSerSer 13928 : ...................ag{A}TATCGTTACAAATGTGCGATCGTGGAATTGTCCAGT : 13631 228 : SerArgLysAspSerLysValAspGlyLysIleTyrArgArgLeuCysTyrAlaIleLys : 247 !!!:!!:!:!!||| ..!.!.! !:!!||||||||||||:!!|||:!!:!!|||:!! ArgLysArgAsnSerValThrGlnAspGluIleTyrArgArgValCysHisSerIleGln 13630 : CGGAAAAGGAACAGTGTCACGCAGGATGAAATTTATAGAAGAGTGTGTCATTCGATTCAA : 13571 248 : ThrHisLysArgAlaLeu<->AlaTyrLeuAlaGluIleGluAspPheTyrSerValAsn : 266 !|||:!!!.!|||:!! ::: ||| :::|||......... GlyHisGlnHisAlaIleLysSerValLeuLysLysIleArgGlnIleValLeuAsnVal 13570 : GGACACCAGCATGCTATAAAGtcggtattaaaaaagatacgtcaaattgttttaaatgtt : 13511 267 : IlePheMetGlnValGlyAlaSerIleLeuCys{Le} >>>> Target Intron 2 : 278 ::: ... .!! !! !:!!||| !!{! } 611 bp LeuCysPhePheSerSerMetLeuLeuLeuArg{Pr}++ 13510 : ctttgctttttttctAGCATGTTACTATTACGC{CC}gt..................... : 13471 279 : >>>> {u}ThrValThrMetMetLysIleAlaThrIleThrTrpSerMetGluThrAsn : 295 {!}|||:!!..! !! :!!:!::!!!.! ! !:! !||| ! ! ++{o}ThrIleValTrpLysGlnValSerAsnSerGluIleAsnAlaGluPheAla 13470 : ....ag{A}ACAATTGTTTGGAAACAGGTGTCGAACTCGGAGATTAACGCGGAGTTTGCC : 12813 296 : GlnTyrTyrGlyTyrValIleAlaGlnValValHisIlePhePheLeuThrAlaGlnGly : 315 :!! !!! ! !!:!:!!:!: !|||:!!|||||||||.!!!:!|||||| !|||||| LysAspCysThrPheIleValIleGlnLeuValHisIleLeuTyrLeuThrLeuGlnGly 12812 : AAGGATTGCACATTTATCGTGATTCAATTGGTACACATACTTTACCTAACTCTTCAAGGA : 12753 316 : GlnPheValIleAspSerHisGluAsnValTyrTrpAsp{Me} >>>> Target Int : 329 |||||||||||||||:!!:!!|||.!.:!!!:! ...{!!} 62 bp GlnPheValIleAspAlaAsnGluGluIlePheGluSer{Il}++ 12752 : CAATTCGTGATCGACGCGAACGAGGAAATCTTCGAATCG{AT}gt............... : 12707 330 : ron 3 >>>> {t}TyrGluProTyrTrpTyrAsnLeuGlnSerLysMetGlnAlaMet : 344 {:}|||.!. !!! ||||||||| !.!.!.!!:!! !|||:!!:!! ++{e}TyrAsnAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeu 12706 : ..........ag{A}TACAACGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTG : 12604 345 : PheValLeuIleLeuArgArgAsnLeuAsnProProLeuLeuThrAlaGlyGlyLeuVal : 364 ||||||||| !||||||!.! !|||::! !!|||! !:!!|||||||||||||||:!! PheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIle 12603 : TTTGTATTAGCATTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATT : 12544 365 : GlnLeuAsnLeuAsnThrPheAlaLys >>>> Target Intron 4 >>>> ValV : 375 !:!!||||||.!.!:!|||:!!:!! 78 bp :!!| ThrMetAsnLeuGlnSerPheSerGlu++ ++IleV 12543 : ACAATGAACTTGCAAAGTTTCTCAGAGgt.........................agATTG : 12433 376 : alLysThrSerValSerTyrPheThrValLeuLysSerVal : 388 ||||||||||||||||||||!:!! !||||||||||||||| alLysThrSerValSerTyrTyrMetValLeuLysSerVal 12432 : TAAAGACGTCTGTCTCGTACTACATGGTACTGAAATCCGTA : 12392 vulgar: AfOr106 118 388 . LHQN01017803.1 14218 12391 - 458 M 51 153 G 1 0 M 44 132 S 0 2 5 0 2 I 0 262 3 0 2 S 1 1 M 38 114 G 0 3 M 24 72 S 0 2 5 0 2 I 0 607 3 0 2 S 1 1 M 50 150 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 44 132 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 12392 14218 458 - . gene_id 1 ; sequence AfOr106 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 13932 14218 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13932 14218 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local splice5 13930 13931 . - . intron_id 1 ; splice_site "gt" LHQN01017803.1 exonerate:protein2genome:local intron 13666 13931 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 13666 13667 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 13474 13665 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13474 13665 . - . insertions 3 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 13472 13473 . - . intron_id 2 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 12863 13473 . - . intron_id 2 LHQN01017803.1 exonerate:protein2genome:local splice3 12863 12864 . - . intron_id 1 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 12710 12862 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12710 12862 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 12708 12709 . - . intron_id 3 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 12648 12709 . - . intron_id 3 LHQN01017803.1 exonerate:protein2genome:local splice3 12648 12649 . - . intron_id 2 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 12515 12647 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12515 12647 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 12513 12514 . - . intron_id 4 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 12437 12514 . - . intron_id 4 LHQN01017803.1 exonerate:protein2genome:local splice3 12437 12438 . - . intron_id 3 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 12392 12436 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12392 12436 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 12392 14218 458 - . alignment_id 1 ; Query AfOr106 ; Align 14219 119 153 ; Align 14066 171 132 ; Align 13665 216 114 ; Align 13548 254 72 ; Align 12862 279 150 ; Align 12647 330 132 ; Align 12437 374 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 262 Query range: 292 -> 387 Target range: 25468 -> 24792 293 : GluThrAsnGlnTyrTyrGlyTyrValIleAlaGlnValValHisIlePhePheLeuThr : 312 ||| !!.. !|||! ! !!:! !!! ||||||:!!:!!|||!!:.!.||||||..! GluTrpThrLeuTyrCysThrPhePheThrAlaGlnLeuLeuHisMetLeuPheLeuVal 25468 : GAATGGACATTGTACTGCACGTTCTTCACGGCCCAGTTGTTACACATGCTGTTCTTAGTC : 25411 313 : AlaGlnGlyGlnPheValIleAspSerHisGluAsnValTyrTrpAsp{Me} >>>> T : 329 !.!|||||||||||||||:!:|||:!!:!!!!::!!|||||| {!!} ValGlnGlyGlnPheValLeuAspAlaTyrAspAspValTyrAsnThr{Il}++ 25410 : GTTCAGGGGCAGTTCGTGTTGGACGCGTACGACGATGTTTATAATACG{AT}gt...... : 25356 330 : arget Intron 1 >>>> {t}TyrGluProTyrTrpTyrAsnLeuGlnSerLysMet : 341 314 bp {:}|||||| !! |||||||||! !..!!!!|||! ! ++{e}TyrGluSerThrTrpTyrAsnSerSerCysLysThr 25355 : ...................ag{A}TACGAATCGACATGGTACAATTCTTCGTGCAAAACG : 25010 342 : GlnAlaMetPheValLeuIleLeuArgArgAsnLeuAsnProProLeuLeuThrAlaGly : 361 ||||||:!:!:!:!!||| ||||||!!!!:!||||||||||||||||||||||||||| GlnAlaLeuTyrIleLeuAlaLeuArgSerSerLeuAsnProProLeuLeuThrAlaGly 25009 : CAAGCGTTATACATATTAGCGTTACGGAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGT : 24950 362 : GlyLeuValGlnLeuAsnLeuAsnThrPheAlaLys >>>> Target Intron 2 > : 374 |||!!!:!! !|||||||||!!.||||||:!!:!! 77 bp GlyPheIleThrLeuAsnLeuLysThrPheSerGlu++ 24949 : GGATTTATAACGTTGAATTTAAAGACCTTCTCAGAGgt...................... : 24909 375 : >>> ValValLysThrSerValSerTyrPheThrValLeuLysSer : 387 :!!:!!|||:!!||||||||||||!:!||||||:!!:!!||| ++IleIleLysSerSerValSerTyrTyrThrValMetGlnSer 24908 : ...agATTATAAAATCATCCGTGTCTTACTATACGGTGATGCAATCG : 24793 vulgar: AfOr106 292 387 . LHQN01017803.1 25468 24792 - 262 M 36 108 S 0 2 5 0 2 I 0 310 3 0 2 S 1 1 M 44 132 5 0 2 I 0 73 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 24793 25468 262 - . gene_id 2 ; sequence AfOr106 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 25359 25468 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25359 25468 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 25357 25358 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 25045 25358 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 25045 25046 . - . intron_id 0 ; splice_site "aG" LHQN01017803.1 exonerate:protein2genome:local cds 24912 25044 . - . LHQN01017803.1 exonerate:protein2genome:local exon 24912 25044 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 24910 24911 . - . intron_id 2 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 24835 24911 . - . intron_id 2 LHQN01017803.1 exonerate:protein2genome:local splice3 24835 24836 . - . intron_id 1 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 24793 24834 . - . LHQN01017803.1 exonerate:protein2genome:local exon 24793 24834 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 24793 25468 262 - . alignment_id 2 ; Query AfOr106 ; Align 25469 293 108 ; Align 25044 330 132 ; Align 24835 374 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 240 Query range: 283 -> 387 Target range: 17703 -> 16906 284 : LysIleAlaThrIleThrTrpSerMetGluThrAsnGlnTyrTyrGlyTyrValIleAla : 303 :!!:!:::!||| !!::..!!!:!!: ! !!::!|||! !.!!!:!..!:!:..! GlnLeuSerThrSerAspPheAspIleAspPheTyrArgTyrCysSerPheThrLeuCys 17703 : CAGCTGAGTACGTCGGATTTCGACATAGACTTCTACAGATATTGCAGTTTTACGTTGTGT : 17646 304 : GlnValValHisIlePhePheLeuThrAlaGlnGlyGlnPheValIleAspSerHisGlu : 323 |||:!!:!!|||:!:||| !!:!!! ! !|||||||||||||||:!:|||||| !||| GlnLeuMetHisLeuPheValIleMetLeuGlnGlyGlnPheValLeuAspSerCysGlu 17645 : CAACTGATGCACCTGTTCGTTATCATGCTTCAGGGACAGTTCGTGCTGGATTCGTGCGAG : 17586 324 : AsnValTyrTrpAsp{Me} >>>> Target Intron 1 >>>> {t}TyrGluPro : 332 !..:!!:!! !! {!!} 402 bp {:}|||||| !! ArgIleHisGluAla{Il}++ ++{e}TyrGluSer 17585 : AGAATTCACGAGGCG{AT}gt.........................ag{A}TACGAATCA : 17157 333 : TyrTrpTyrAsnLeuGlnSerLysMetGlnAlaMetPheValLeuIleLeuArgArgAsn : 352 ! ||||||!.. !...||||||! ||||||:!:!:!|||:!! |||||||||||| LeuTrpTyrThrSerSerSerLysThrGlnAlaLeuTyrValValAlaLeuArgArgAsn 17156 : TTATGGTACACAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCGTTACGAAGAAAC : 17097 353 : LeuAsnProProLeuLeuThrAlaGlyGlyLeuValGlnLeuAsnLeuAsnThrPheAla : 372 |||!..||| !!! !||||||||||||||||||||||||||||||:!!.!.!:!|||||| LeuThrProThrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMetGlnSerPheAla 17096 : CTAACACCTACCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATGCAAAGCTTCGCA : 17037 373 : Lys >>>> Target Intron 2 >>>> ValValLysThrSerValSerTyrPheT : 383 :!! 83 bp |||||||||! !||||||||||||!:!| Glu++ ++ValValLysMetSerValSerTyrTyrT 17036 : GAGgt.........................agGTGGTAAAAATGTCCGTTTCCTATTATA : 16921 384 : hrValLeuLysSer : 387 |||||||||||!!! hrValLeuLysThr 16920 : CGGTGTTGAAGACA : 16907 vulgar: AfOr106 283 387 . LHQN01017803.1 17703 16906 - 240 M 45 135 S 0 2 5 0 2 I 0 398 3 0 2 S 1 1 M 44 132 5 0 2 I 0 79 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 16907 17703 240 - . gene_id 3 ; sequence AfOr106 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 17567 17703 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17567 17703 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 17565 17566 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 17165 17566 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 17165 17166 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 17032 17164 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17032 17164 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 17030 17031 . - . intron_id 2 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 16949 17031 . - . intron_id 2 LHQN01017803.1 exonerate:protein2genome:local splice3 16949 16950 . - . intron_id 1 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 16907 16948 . - . LHQN01017803.1 exonerate:protein2genome:local exon 16907 16948 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 16907 17703 240 - . alignment_id 3 ; Query AfOr106 ; Align 17704 284 135 ; Align 17164 330 132 ; Align 16949 374 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 234 Query range: 80 -> 215 Target range: 29946 -> 29370 81 : PheIleIleAsnGluGlnLysPheLysGluLeuPheThrSerIleLeuAsnAspTrpGln : 100 |||||| :::::: ::!.!.!:!:!!|||!!. !!!!:!!!!! |||||| ! PheIleAsnSerLysLeuGlnLeuArgLysLeuLeuGlyCysValPheAlaAspTrpIle 29946 : ttcattaattcgaaattacaGCTAAGGAAGCTTTTGGGGTGCGTATTCGCAGATTGGATA : 29889 101 : LysLysLysThrHisGluGluGluMetIleMetGluLysTyrAlaAspLysSerValPhe : 120 !|||::! !! ! ||| ! ||||||!!:||||||||| ! !:!.!!:!!||| ValLysArgProLysProGluMetAspIleMetAspLysTyrAlaLysArgGlyLeuPhe 29888 : GTAAAGCGGCCAAAACCCGAAATGGACATTATGGACAAGTACGCGAAAAGAGGCCTGTTT : 29829 121 : PheIleLeuIleTyrVal{V} >>>> Target Intron 1 >>>> {al}AsnAla : 129 |||! !! !:!:||||||{!} 174 bp {.!}|||!.! PheSerArgLeuTyrVal{A}++ ++{la}AsnGly 29828 : TTCAGTCGTTTGTACGTA{G}gt.........................ag{CA}AATGGA : 29628 130 : TyrPheCysSerIleLeuPheLeuLeuLeuProPheThrProIleLeuLeuAspIlePhe : 149 !||||||! !:!!|||||| ! !:!! !!.!!|||||| !:!!||||||:!!.!! IlePheCysTyrValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIle 29627 : ATCTTCTGCTACGTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATT : 29568 150 : IleProLeuAsnGluSerArgProArgValGlnMetTyrProAlaTyrTyrTyrIleGlu : 169 ||| !|||||||||||| ! !! ! !!:||||||||| !!||| !:!!!!: SerProLysAsnGluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAsp 29567 : TCGCCGAAAAACGAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGAC : 29508 170 : AsnGluAlaAspTyrTyrTyrProIleLeuIlePheSerIleValSerLeuLeuThrAla : 189 .!.|||! ! !!||||||||| :!::!! ! !! !:!! ! !:!! !..!!.! GluGluGluHisTyrTyrTyr---LeuMetGlyHisMetLeuSerValIleThrValVal 29507 : GAAGAGGAGCATTACTACTAT---CTGATGGGTCACATGCTTTCCGTGATAACTGTCGTG : 29451 190 : MetCysValPheIleAlaThrAspThrMetLeuIleTyrIleValGlnHisAlaCysGly : 209 .!.! !|||!:!|||:!! !||||||!!:! !!!: !!||||||||||||||||||||| PhePheValTyrIleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGly 29450 : TTTTTCGTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGA : 29391 210 : LeuLeuAlaLeuAlaGly : 215 |||||| !|||:!!||| LeuLeuAsnLeuSerGly 29390 : TTATTGAACCTCTCTGGG : 29371 vulgar: AfOr106 80 215 . LHQN01017803.1 29946 29370 - 234 M 46 138 S 0 1 5 0 2 I 0 170 3 0 2 S 1 2 M 49 147 G 1 0 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29371 29946 234 - . gene_id 4 ; sequence AfOr106 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 29808 29946 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29808 29946 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 29806 29807 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 29634 29807 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 29634 29635 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 29371 29633 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29371 29633 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 29371 29946 234 - . alignment_id 4 ; Query AfOr106 ; Align 29947 81 138 ; Align 29632 128 147 ; Align 29485 178 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 207 Query range: 119 -> 215 Target range: 26273 -> 25988 120 : PhePheIleLeuIleTyrValValAsnAlaTyrPheCysSerIleLeuPheLeuLeuLeu : 139 |||!:!.!! !.!! ! ..!|||:!! !! !!.|||:!! !||||||:!!! !||| PheTyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeu 26273 : TTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTG : 26216 140 : ProPheThrProIleLeuLeuAspIlePheIleProLeuAsnGluSerArgProArgVal : 159 ||||||..! !! :!!|||||||||.!!!!:||||||||||||!!!||| !!|||:!! ProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeu 26215 : CCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTG : 26156 160 : GlnMetTyrProAlaTyrTyrTyrIleGluAsnGluAlaAspTyrTyrTyrProIleLeu : 179 :!:|||||||||||||||!:!:!!!!: |||! ! ! |||:!!||| !|||:!! PheValTyrProAlaTyrTyrPheValAsp---GluAspLysTyrHisTyrLeuIleVal 26155 : TTCGTCTATCCAGCTTACTATTTCGTCGAC---GAGGACAAATATCATTACTTGATCGTA : 26099 180 : IlePheSerIleValSerLeuLeuThrAlaMetCysValPheIleAlaThrAspThrMet : 199 !! ! !:!! !:!!:!!! ! !!!:! !|||||| !||| !|||.!!! GlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsn 26098 : GGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAAT : 26039 200 : LeuIleTyrIleValGlnHisAlaCysGlyLeuLeuAlaLeuAlaGly : 215 ! !:!:||| !|||||||||||||||||||||||||||:!!|||||| TyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 26038 : TACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 25989 vulgar: AfOr106 119 215 . LHQN01017803.1 26273 25988 - 207 M 50 150 G 1 0 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26273 207 - . gene_id 5 ; sequence AfOr106 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26273 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26273 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26273 207 - . alignment_id 5 ; Query AfOr106 ; Align 26274 120 150 ; Align 26124 171 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 201 Query range: 299 -> 374 Target range: 32966 -> 32711 300 : TyrValIleAlaGlnValValHisIlePhePheLeuThrAlaGlnGlyGlnPheValIle : 319 !:!:!!|||||||||..!||||||!!:.!.||||||||| !|||||||||||||||||| PheLeuIleAlaGlnThrValHisMetLeuPheLeuThrIleGlnGlyGlnPheValIle 32966 : TTCCTGATCGCACAAACTGTACACATGCTGTTTTTGACGATTCAGGGACAGTTCGTGATC : 32909 320 : AspSerHisGluAsnValTyrTrpAsp{Me} >>>> Target Intron 1 >>>> : 329 |||||||||!!:!..|||||| :!!{:!} 33 bp AspSerHisAspThrValTyr---Asn{Va}++ ++ 32908 : GATTCGCATGATACAGTGTAC---AAT{GT}gt.........................ag : 32849 330 : {t}TyrGluProTyrTrpTyrAsnLeuGlnSerLysMetGlnAlaMetPheValLeuIle : 348 {:}|||||| !! !||||||!!.:!!! ! !!|||:!:||| !:!: !|||:!! {l}TyrGluAlaIleTrpTyrLysMetProProLysLeuGlnLeuLeuAspValValAla 32848 : {A}TACGAGGCAATTTGGTATAAGATGCCACCTAAACTTCAGTTGCTAGACGTTGTAGCG : 32792 349 : LeuArgArgAsnLeuAsnProProLeuLeuThrAlaGlyGlyLeuValGlnLeuAsnLeu : 368 ||||||!:!!:!|||!.!||||||:!!||||||||||||||||||:!!!:!|||:!!||| LeuArgLysSerLeuThrProProIleLeuThrAlaGlyGlyLeuMetArgLeuAspLeu 32791 : CTTAGAAAAAGCCTAACTCCTCCTATACTGACGGCGGGAGGGTTGATGCGGTTAGATTTG : 32732 369 : AsnThrPheAlaLysVal : 374 |||:!!||||||:!!||| AsnSerPheAlaGlnVal 32731 : AATTCTTTCGCACAGGTG : 32712 vulgar: AfOr106 299 374 . LHQN01017803.1 32966 32711 - 201 M 27 81 G 1 0 M 1 3 S 0 2 5 0 2 I 0 29 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 32712 32966 201 - . gene_id 6 ; sequence AfOr106 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 32881 32966 . - . LHQN01017803.1 exonerate:protein2genome:local exon 32881 32966 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local splice5 32879 32880 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 32848 32880 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 32848 32849 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 32712 32847 . - . LHQN01017803.1 exonerate:protein2genome:local exon 32712 32847 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 32712 32966 201 - . alignment_id 6 ; Query AfOr106 ; Align 32967 300 81 ; Align 32886 328 3 ; Align 32847 330 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 169 Query range: 123 -> 215 Target range: 18459 -> 18186 124 : IleTyrValValAsnAlaTyrPheCysSerIleLeuPheLeuLeuLeuProPheThrPro : 143 |||!:! !||||||||||||.!!||||||.!!||||||:!!! !:!!|||!:::!! !! IlePheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpSerThr 18459 : ATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGTCGACC : 18402 144 : IleLeuLeuAspIlePheIleProLeuAsnGluSerArgProArgValGlnMetTyrPro : 163 !|||:!!:!! !:!! !!! !||| !!!!! ! ! ! ! :!: ||| ArgLeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuProValValValPro 18401 : CGATTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCC : 18342 164 : AlaTyrTyrTyrIleGluAsnGluAlaAspTyrTyrTyrProIleLeuIlePheSerIle : 183 !.!||||||!:!:!!!!: |||!.!!!:||||||||| !|||:!!:!! !.!!! GlyTyrTyrPheValAsp---GluValGluTyrTyrTyrTyrIleIleLeuHisGlyThr 18341 : GGATATTACTTCGTCGAC---GAAGTAGAATACTATTATTACATCATACTTCACGGAACG : 18285 184 : ValSerLeuLeuThrAlaMetCysValPheIleAlaThrAspThrMetLeuIleTyrIle : 203 !!!!:!!|||! !!.!:!! |||!:! !||| !||||||! ! !!!: :!: CysThrIleLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeu 18284 : TGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTG : 18225 204 : ValGlnHisAlaCysGlyLeuLeuAlaLeuAlaGly : 215 |||||||||.!!|||||||||!!!|||:!!|||||| ValGlnHisThrCysGlyLeuPheAlaValAlaGly 18224 : GTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 18187 vulgar: AfOr106 123 215 . LHQN01017803.1 18459 18186 - 169 M 46 138 G 1 0 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18187 18459 169 - . gene_id 7 ; sequence AfOr106 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18187 18459 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18187 18459 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 18187 18459 169 - . alignment_id 7 ; Query AfOr106 ; Align 18460 124 138 ; Align 18322 171 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 167 Query range: 329 -> 387 Target range: 475 -> 207 330 : TyrGluProTyrTrpTyrAsnLeuGlnSerLysMetGlnAlaMetPheValLeuIleLeuArgA : 351 |||!!: !! ||||||||| ! !..!::! !||| !:!!!:!:!!||| !||||||| TyrAspAlaValTrpTyrAsnSerThrGlnArgSerGlnIleLeuTyrLeuLeuAlaLeuArgA 475 : TACGATGCAGTATGGTACAACAGTACGCAGCGATCGCAAATTTTGTACCTGTTAGCTTTAAGGA : 412 352 : rgAsnLeuAsnProProLeuLeuThrAlaGlyGlyLeuValGlnLeuAsnLeuAsnThrPheAl : 372 ||::!|||!.!||||||||||||:!!||||||||||||:!!..!||||||:!!.!.||||||:! rgSerLeuThrProProLeuLeuSerAlaGlyGlyLeuIleSerLeuAsnMetGluThrPheSe 411 : GGTCTTTAACTCCACCACTGCTTTCTGCAGGAGGACTGATTTCGTTGAATATGGAAACTTTTTC : 349 373 : aLys >>>> Target Intron 1 >>>> ValValLysThrSerValSerTyrPheThrV : 384 !||| 94 bp :!!:!!|||||||||||||||!::||||||| rLys++ ++IleLeuLysThrSerValSerTrpPheThrV 348 : GAAGgt.........................agATATTAAAAACTTCTGTTTCCTGGTTCACGG : 219 385 : alLeuLysSer : 387 ||:!!|||||| alIleLysSer 218 : TAATAAAATCG : 208 vulgar: AfOr106 329 387 . LHQN01017803.1 475 207 - 167 M 44 132 5 0 2 I 0 90 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 208 475 167 - . gene_id 8 ; sequence AfOr106 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 344 475 . - . LHQN01017803.1 exonerate:protein2genome:local exon 344 475 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 342 343 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 250 343 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 250 251 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 208 249 . - . LHQN01017803.1 exonerate:protein2genome:local exon 208 249 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 208 475 167 - . alignment_id 8 ; Query AfOr106 ; Align 476 330 132 ; Align 250 374 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 149 Query range: 329 -> 374 Target range: 22422 -> 22287 330 : TyrGluProTyrTrpTyrAsnLeuGlnSerLysMetGlnAlaMetPheValLeuIleLeu : 349 |||||| !! |||||||||! !..!!!!|||! !||||||:!:!:!:!!||| ||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeu 22422 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTA : 22365 350 : ArgArgAsnLeuAsnProProLeuLeuThrAlaGlyGlyLeuValGlnLeuAsnLeuAsn : 369 |||!!!!:!||||||||||||||||||||||||||||||!!!:!! !|||||||||!!. ArgSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLys 22364 : CGGAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAG : 22305 370 : ThrPheAlaLysVal : 374 ||||||:!!:!!||| ThrPheSerGluVal 22304 : ACCTTCTCAGAGGTA : 22288 vulgar: AfOr106 329 374 . LHQN01017803.1 22422 22287 - 149 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 22288 22422 149 - . gene_id 9 ; sequence AfOr106 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 22288 22422 . - . LHQN01017803.1 exonerate:protein2genome:local exon 22288 22422 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 22288 22422 149 - . alignment_id 9 ; Query AfOr106 ; Align 22423 330 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 146 Query range: 322 -> 374 Target range: 28677 -> 28521 323 : GluAsnValTyrTrpAspMetTyrGluProTyrTrpTyrAsnLeuGlnSerLysMetGln : 342 :!!.!.:!!!:! !! |||... !! ! ||||||||| !..! !!!:!! !||| GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 28677 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 28620 343 : AlaMetPheValLeuIleLeuArgArgAsnLeuAsnProProLeuLeuThrAlaGlyGly : 362 .!!:!!!:!|||||| !|||||||||!:!|||!.!|||||||||||||||||||||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 28619 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 28560 363 : LeuValGlnLeuAsnLeuAsnThrPheAlaLysVal : 374 |||:!!...|||||||||.!.|||||||||:::||| LeuIleSerLeuAsnLeuGluThrPheAlaGluVal 28559 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGaggta : 28522 vulgar: AfOr106 322 374 . LHQN01017803.1 28677 28521 - 146 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 28522 28677 146 - . gene_id 10 ; sequence AfOr106 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 28522 28677 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28522 28677 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 28522 28677 146 - . alignment_id 10 ; Query AfOr106 ; Align 28678 323 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 126 -> 205 Target range: 33714 -> 33480 127 : ValAsnAlaTyrPheCysSerIleLeuPheLeuLeuLeuProPheThrProIleLeuLeu : 146 |||!.! !|||.!! ! ! !:!!|||! ! ! !|||.!!! !|||.!!:!!||| ValThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeu 33714 : GTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTG : 33657 147 : AspIlePheIleProLeuAsnGluSerArgProArgValGlnMetTyrProAlaTyrTyr : 166 |||:!!.!! !||||||||||||||||||||||||:!! ! ||| !||||||! ! AspLeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyrCys 33656 : GACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTACTGT : 33597 167 : TyrIleGluAsnGluAlaAspTyrTyrTyrProIleLeuIlePheSerIleValSerLeu : 186 |||.!! ||| !! !|||||||||||| !:!!:!! !:!!!!! !!.!!!!:!! TyrPhe---AsnProAspAspTyrTyrTyrTyrValValGlyTyrThrSerAlaCysIle 33596 : TACTTC---AATCCGGACGACTACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATA : 33540 187 : LeuThrAlaMetCysValPheIleAlaThrAspThrMetLeuIleTyrIleValGln : 205 !! !||| !|||.!!:!!!.!.!!|||! !!!::!!|||:!!:!!|||!:: GlyMetAlaGlyLeuValLeuValGlyAlaAspIleIleMetIleHisLeuValArg 33539 : GGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATTATGATACATCTTGTACGT : 33481 vulgar: AfOr106 126 205 . LHQN01017803.1 33714 33480 - 130 M 42 126 G 1 0 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33481 33714 130 - . gene_id 11 ; sequence AfOr106 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33481 33714 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33481 33714 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 33481 33714 130 - . alignment_id 11 ; Query AfOr106 ; Align 33715 127 126 ; Align 33589 170 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 271 Query range: 284 -> 389 Target range: 12876 -> 12499 285 : IleValLeuAlaPheThrGlyThrPheValLysLeuSerSerMetGluValAsnValArg : 304 :!::!!:!! ! ||| !..!!:: !:!!:!!|||!:! !|||:!!|||!.!..! LeuIleIleLeuArgThrIleValTrpLysGlnValSerAsnSerGluIleAsnAlaGlu 12876 : CTGATCATCCTCAGAACAATTGTTTGGAAACAGGTGTCGAACTCGGAGATTAACGCGGAG : 12819 305 : PhePheThrPheCysAlaPheThrValGlyGlnLeuThrHisLeuPhePheLeuThrIle : 324 ||| !! ! !|||.!!|||! !||| !||||||..!|||:!!.!!!:!||||||:!! PheAlaLysAspCysThrPheIleValIleGlnLeuValHisIleLeuTyrLeuThrLeu 12818 : TTTGCCAAGGATTGCACATTTATCGTGATTCAATTGGTACACATACTTTACCTAACTCTT : 12759 325 : MetGlyGlnPheLeuIleAsnAlaAsnAspGluIlePheLysThr{Va} >>>> Targ : 340 ...|||||||||:!!|||:!!||||||!!:|||||||||:!!:!!{:!} GlnGlyGlnPheValIleAspAlaAsnGluGluIlePheGluSer{Il}++ 12758 : CAAGGACAATTCGTGATCGACGCGAACGAGGAAATCTTCGAATCG{AT}gt......... : 12707 341 : et Intron 1 >>>> {l}TyrGluAlaTyrTrpTyrAsnGlySerSerArgThrGln : 353 62 bp {!}|||.!.|||! |||||||||.!!..!!.!||||||||| ++{e}TyrAsnAlaLeuTrpTyrAsnSerAspLysArgThrGln 12706 : ................ag{A}TACAACGCTTTGTGGTATAACAGCGACAAGAGAACGCAA : 12610 354 : SerLeuTyrIleLeuValLeuArgLysCysLeuSerProProLysLeuThrGlyGlyGly : 373 ||||||!:!:!!|||!.!||||||!!.||||||||| !!|||:!!:!!|||!.!|||||| SerLeuPheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGly 12609 : TCGTTGTTTGTATTAGCATTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGA : 12550 374 : LeuValAlaLeuAsnLeuAspSerPheLeuGlnIleLeuLysAlaSer : 389 |||:!!.!!:!!||||||.!.||||||! !:!!:!! !::::!!||| LeuIleThrMetAsnLeuGlnSerPheSerGluValThrArgSerSer 12549 : CTAATTACAATGAACTTGCAAAGTTTCTCAGAGGTAACTCGTTCATCG : 12500 vulgar: AfOr111 284 389 . LHQN01017803.1 12876 12499 - 271 M 55 165 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 12500 12876 271 - . gene_id 1 ; sequence AfOr111 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 12710 12876 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12710 12876 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 12708 12709 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 12648 12709 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 12648 12649 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 12500 12647 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12500 12647 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 12500 12876 271 - . alignment_id 1 ; Query AfOr111 ; Align 12877 285 165 ; Align 12647 341 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 250 Query range: 132 -> 224 Target range: 26264 -> 25988 133 : ThrValTyrGluValSerIlePhePheCysGlyPheMetPheLeuLeuIleProSerIle : 152 ||| !! ! !||| !|||! !!.|||!.! !:!:|||:!!! !:!:|||! !:!: ThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheVal 26264 : ACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTG : 26207 153 : ProProIleLeuAsnIleIleSerProLeuAsnValSerArgGlyArgGluLeuIleTyr : 172 !!|||||||||:!!|||:!!! !|||||||||! !!!!|||!.!||| !!!!:!!||| SerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyr 26206 : TCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTAT : 26147 173 : ProSerTyrTyrPheValAspGluGluLysTyrTyrTyrProIleLeuMetHisMetIle : 192 |||:!!||||||||||||||||||!!:||||||:!!||| !|||:!! !|||||| ! ProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyr 26146 : CCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTAT : 26087 193 : AlaValAlaLeuIleLeuThrSerValTyrValAlaCysAspThrTyrLeuValTyrIle : 212 !|||!.!:!!!!:|||! !||||||!:! !|||||||||.!! !!! !|||||| ! LeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAla 26086 : CTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCC : 26027 213 : ValHisHisGlyCysAlaLeuLeuAlaIleSerGly : 224 |||!!.|||!.!|||!.!||||||||||||:!!||| ValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 26026 : GTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 25989 vulgar: AfOr111 132 224 . LHQN01017803.1 26264 25988 - 250 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26264 250 - . gene_id 2 ; sequence AfOr111 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26264 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26264 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26264 250 - . alignment_id 2 ; Query AfOr111 ; Align 26265 133 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 228 Query range: 141 -> 246 Target range: 14179 -> 13864 142 : CysGlyPheMetPheLeuLeuIleProSerIleProProIleLeuAsnIleIleSerPro : 161 |||! !.!!:!!|||:!!! !! ||| !! !|||! !||||||:!!|||:!! !||| CysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuPro 14179 : TGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCG : 14122 162 : LeuAsnValSerArgGlyArgGluLeuIleTyrProSerTyrTyrPheValAspGluGlu : 181 !|||! !||||||! ! !! !! !|||||||||:!!|||||||||..!||||||.!. LysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHis 14121 : AAGAACGAGTCACGAGACGTAGCGTACATTTATCCGGCCTATTATTTCACCGACGAGCAT : 14062 182 : LysTyrTyrTyrProIleLeuMetHisMetIleAlaValAlaLeuIleLeuThrSerVal : 201 |||||| !! !|||:!!! !|||||| :!!||| !|||:!::!! !! !||| LysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrVal 14061 : AAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTG : 14002 202 : TyrValAlaCysAspThrTyrLeuValTyrIleValHisHisGlyCysAlaLeuLeuAla : 221 |||||||||||||||||| !! !:!!|||:!!|||!!.|||||||||!.!||||||||| TyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAla 14001 : TACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCC : 13942 222 : IleSerGlyTyrArgPheLysHisAlaValAspAspIleLysLeuCysGlyGluAspTyr : 241 :!:|||||| :::...::: ... ! :!!!!.! !! !.!!! :!! ! ValSerGly***LysIleArgSerAsnAspSer***LeuAsnProPheSerAlaAsnLys 13941 : GTGTCCGGgtaaaaaattcgatcgaacgattCGTAGCTCAACCCTTTCAGTGCCAACAAA : 13882 242 : IleAspSerLeuMet : 246 ||||||!!!|||!!: IleAspThrLeuIle 13881 : ATCGATACGTTAATT : 13865 vulgar: AfOr111 141 246 . LHQN01017803.1 14179 13864 - 228 M 105 315 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13865 14179 228 - . gene_id 3 ; sequence AfOr111 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13865 14179 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13865 14179 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13865 14179 228 - . alignment_id 3 ; Query AfOr111 ; Align 14180 142 315 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 225 Query range: 139 -> 265 Target range: 29625 -> 29187 140 : PhePheCysGlyPheMetPheLeuLeuIleProSerIleProProIleLeuAsnIleIle : 159 .!!|||||| ! !!:!:||| ! !:!: !!! !! !|||! !:!!|||:!!:!!||| IlePheCysTyrValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIle 29625 : ATCTTCTGCTACGTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATT : 29568 160 : SerProLeuAsnValSerArgGlyArgGluLeuIleTyrProSerTyrTyrPheValAsp : 179 |||||| !|||! !||||||||| !! !!!|||||||||:!! !!||| !|||||| SerProLysAsnGluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAsp 29567 : TCGCCGAAAAACGAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGAC : 29508 180 : GluGluLysTyrTyrTyrProIleLeuMetHisMetIleAlaValAlaLeuIleLeuThr : 199 ||||||:!!:!!|||||| !:!::!! ||||||:!!:!!||| ! !:!!:!! ! GluGluGluHisTyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhe 29507 : GAAGAGGAGCATTACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTT : 29448 200 : SerValTyrValAlaCysAspThrTyrLeuValTyrIleValHisHisGlyCysAlaLeu : 219 ! !||||||:!!:!!||||||||| !! !:!! !!||||||!!.|||!.!|||!.!||| PheValTyrIleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeu 29447 : TTCGTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTA : 29388 220 : LeuAlaIleSerGlyTyrArgPheLysHisAlaValAspAspIle{Ly} >>>> Targ : 235 ||| !:!!||||||!! !.!! .....! !.....!|||{ } LeuAsnLeuSerGly***AlaIlePheArgCysTyrSerSerIle{Gl}+- 29387 : TTGAACCTCTCTGGGTAAGCAATTTTCAGATGTTACTCGAGTATC{GG}gc......... : 29336 236 : et Intron 1 >>>> {s}LeuCysGlyGluAspTyrIleAspSerLeuMetAspGlu : 248 60 bp { } ! ! ..! !! ! !!!!! !:!!|||!!: ++{y}ThrArgSerPheMetIleAsnTyrThrGluValAspAsp 29335 : ................ag{C}ACACGATCATTTATGATTAATTACACCGAAGTGGACGAC : 29241 249 : ThrTyrThrLysValArgGlnSerIleLysAlaHisLysThrAlaValGlu : 265 ||||||! !|||||||||!!.|||||||||||||||:!! !|||:!!||| ThrTyrArgLysValArgHisSerIleLysAlaHisGlnHisAlaMetGlu 29240 : ACGTATAGAAAAGTGCGCCATTCGATCAAGGCTCATCAACACGCTATGGAG : 29188 vulgar: AfOr111 139 265 . LHQN01017803.1 29625 29187 - 225 M 95 285 S 0 2 5 0 2 I 0 56 3 0 2 S 1 1 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29188 29625 225 - . gene_id 4 ; sequence AfOr111 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 29339 29625 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29339 29625 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 29337 29338 . - . intron_id 1 ; splice_site "GC" LHQN01017803.1 exonerate:protein2genome:local intron 29279 29338 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 29279 29280 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 29188 29278 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29188 29278 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 29188 29625 225 - . alignment_id 4 ; Query AfOr111 ; Align 29626 140 285 ; Align 29278 236 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 202 Query range: 125 -> 224 Target range: 18483 -> 18186 126 : LysArgAlaLysValLeuSerThrValTyrGluValSerIlePhePheCysGlyPheMet : 145 |||::: ! !..!|||..! !:!!!:! !|||!:! !:!.!!|||..!|||:!! LysGlnLeuAlaThrLeuAspArgIlePheProValAsnAlaTyrIleCysSerPheLeu 18483 : aaacaattAGCAACTCTCGATCGGATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTG : 18426 146 : PheLeuLeuIleProSerIleProProIleLeuAsnIleIleSerProLeuAsnValSer : 165 |||:!!! !:!:|||!!! !!! !:!::!!||| !!.! !!! !|||:!!!!! PheIleGlnValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIleThr 18425 : TTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACG : 18366 166 : ArgGlyArgGluLeuIleTyrProSerTyrTyrPheValAspGluGluLysTyrTyrTyr : 185 ! !.!! ! !:!!:!! |||.!!||||||||||||||||||! !:!!||||||||| ProSerLeuProValValValProGlyTyrTyrPheValAspGluValGluTyrTyrTyr 18365 : CCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTAT : 18306 186 : ProIleLeuMetHisMetIleAlaValAlaLeuIleLeuThrSerValTyrValAlaCys : 205 !|||:!!:!:||| ! ..!..! !||||||:!!..! !|||||| !|||||| TyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCys 18305 : TACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 18246 206 : AspThrTyrLeuValTyrIleValHisHisGlyCysAlaLeuLeuAlaIleSerGly : 224 |||||| !! !:!! :!:|||!!.||| !|||!.!|||!!!|||:!::!!||| AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly 18245 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 18187 vulgar: AfOr111 125 224 . LHQN01017803.1 18483 18186 - 202 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18187 18483 202 - . gene_id 5 ; sequence AfOr111 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18187 18483 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18187 18483 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18187 18483 202 - . alignment_id 5 ; Query AfOr111 ; Align 18484 126 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 160 Query range: 333 -> 385 Target range: 28677 -> 28521 334 : AspGluIlePheLysThrValTyrGluAlaTyrTrpTyrAsnGlySerSerArgThrGln : 353 .!.|||:!:||| ! !|||...||| ! |||||||||.!!||| !!||||||||| GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 28677 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 28620 354 : SerLeuTyrIleLeuValLeuArgLysCysLeuSerProProLysLeuThrGlyGlyGly : 373 !!!||||||:!:|||!.!||||||!:! !!|||!!!|||||| !||||||!.!|||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 28619 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 28560 374 : LeuValAlaLeuAsnLeuAspSerPheLeuGlnIle : 385 |||:!!:!!|||||||||!!:!!!||| !:::::: LeuIleSerLeuAsnLeuGluThrPheAlaGluVal 28559 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGaggta : 28522 vulgar: AfOr111 333 385 . LHQN01017803.1 28677 28521 - 160 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 28522 28677 160 - . gene_id 6 ; sequence AfOr111 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 28522 28677 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28522 28677 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 28522 28677 160 - . alignment_id 6 ; Query AfOr111 ; Align 28678 334 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 145 Query range: 340 -> 394 Target range: 25043 -> 24881 341 : TyrGluAlaTyrTrpTyrAsnGlySerSerArgThrGlnSerLeuTyrIleLeuValLeu : 360 ||||||:!! |||||||||..!|||!!!!:!||||||:!!||||||||||||!.!||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeu 25043 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTA : 24986 361 : ArgLysCysLeuSerProProLysLeuThrGlyGlyGlyLeuValAlaLeuAsnLeuAsp : 380 |||!.. !!|||!:!|||||| !||||||!.!||||||!!!:!!.!!||||||||| ! ArgSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLys 24985 : CGGAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAG : 24926 381 : SerPheLeuGlnIleLeuLysAlaSerPheSerTyrTyrThr : 394 !!!|||! !:!!:!! !!:! ! !.!...! !!|||:!! ThrPheSerGluValThrArgArgLeuIleGlnAspTyrSer 24925 : ACCTTCTCAGAGGTAACGAGGCGACTAATACAAGATTACTCG : 24882 vulgar: AfOr111 340 394 . LHQN01017803.1 25043 24881 - 145 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 24882 25043 145 - . gene_id 7 ; sequence AfOr111 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 24882 25043 . - . LHQN01017803.1 exonerate:protein2genome:local exon 24882 25043 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 24882 25043 145 - . alignment_id 7 ; Query AfOr111 ; Align 25044 341 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 142 Query range: 340 -> 385 Target range: 22422 -> 22287 341 : TyrGluAlaTyrTrpTyrAsnGlySerSerArgThrGlnSerLeuTyrIleLeuValLeu : 360 ||||||:!! |||||||||..!|||!!!!:!||||||:!!||||||||||||!.!||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeu 22422 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTA : 22365 361 : ArgLysCysLeuSerProProLysLeuThrGlyGlyGlyLeuValAlaLeuAsnLeuAsp : 380 |||!.. !!|||!:!|||||| !||||||!.!||||||!!!:!!.!!||||||||| ! ArgSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLys 22364 : CGGAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAG : 22305 381 : SerPheLeuGlnIle : 385 !!!|||! !:!!:!! ThrPheSerGluVal 22304 : ACCTTCTCAGAGGTA : 22288 vulgar: AfOr111 340 385 . LHQN01017803.1 22422 22287 - 142 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 22288 22422 142 - . gene_id 8 ; sequence AfOr111 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 22288 22422 . - . LHQN01017803.1 exonerate:protein2genome:local exon 22288 22422 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 22288 22422 142 - . alignment_id 8 ; Query AfOr111 ; Align 22423 341 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 138 Query range: 340 -> 385 Target range: 475 -> 340 341 : TyrGluAlaTyrTrpTyrAsnGlySerSerArgThrGlnSerLeuTyrIleLeuValLeuArgL : 362 |||!!:||| |||||||||.!!!!!..!|||:!!|||! !||||||:!:|||!.!||||||! TyrAspAlaValTrpTyrAsnSerThrGlnArgSerGlnIleLeuTyrLeuLeuAlaLeuArgA 475 : TACGATGCAGTATGGTACAACAGTACGCAGCGATCGCAAATTTTGTACCTGTTAGCTTTAAGGA : 412 363 : ysCysLeuSerProProLysLeuThrGlyGlyGlyLeuValAlaLeuAsnLeuAspSerPheLe : 383 :!! !|||!!!|||||| !|||:!!!.!|||||||||:!!:!!||||||:!!!!:!!!|||! rgSerLeuThrProProLeuLeuSerAlaGlyGlyLeuIleSerLeuAsnMetGluThrPheSe 411 : GGTCTTTAACTCCACCACTGCTTTCTGCAGGAGGACTGATTTCGTTGAATATGGAAACTTTTTC : 349 384 : uGlnIle : 385 !:!!:!! rLysVal 348 : GAAGGTA : 341 vulgar: AfOr111 340 385 . LHQN01017803.1 475 340 - 138 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 341 475 138 - . gene_id 9 ; sequence AfOr111 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 341 475 . - . LHQN01017803.1 exonerate:protein2genome:local exon 341 475 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 341 475 138 - . alignment_id 9 ; Query AfOr111 ; Align 476 341 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 136 Query range: 340 -> 385 Target range: 17163 -> 17028 341 : TyrGluAlaTyrTrpTyrAsnGlySerSerArgThrGlnSerLeuTyrIleLeuValLeu : 360 ||||||:!!! ||||||!...!!||||||!:!||||||:!!||||||:!::!!!.!||| TyrGluSerLeuTrpTyrThrSerSerSerLysThrGlnAlaLeuTyrValValAlaLeu 17163 : TACGAATCATTATGGTACACAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCGTTA : 17106 361 : ArgLysCysLeuSerProProLysLeuThrGlyGlyGlyLeuValAlaLeuAsnLeuAsp : 380 |||!:! !|||!!!||| !! ||||||!.!|||||||||||| !||||||:!!.!. ArgArgAsnLeuThrProThrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMetGln 17105 : CGAAGAAACCTAACACCTACCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATGCAA : 17046 381 : SerPheLeuGlnIle : 385 |||||| !:!!:!! SerPheAlaGluVal 17045 : AGCTTCGCAGAGGTA : 17029 vulgar: AfOr111 340 385 . LHQN01017803.1 17163 17028 - 136 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 17029 17163 136 - . gene_id 10 ; sequence AfOr111 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 17029 17163 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17029 17163 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 17029 17163 136 - . alignment_id 10 ; Query AfOr111 ; Align 17164 341 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 128 -> 213 Target range: 33738 -> 33483 129 : LysValLeuSerThrValTyrGluValSerIlePhePheCysGlyPheMetPheLeuLeu : 148 ...|||||||||! ! ! !..!|||!!!|||!:!.!! ! ! !! !:!!|||! ! ! SerValLeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThr 33738 : TCCGTTTTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACC : 33681 149 : IleProSerIleProProIleLeuAsnIleIleSerProLeuAsnValSerArgGlyArg : 168 ||| !|||||| !||||||:!!:!!|||||||||||||||! !|||||| !||| AlaProLeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArg 33680 : GCGCCCCTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGT : 33621 169 : GluLeuIleTyrProSerTyrTyrPheValAspGluGluLysTyrTyrTyrProIleLeu : 188 !! ! !||| !:!!|||! !!:! !!:!! !!!: ! ||||||||| !:!!:!! LeuTyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValVal 33620 : TTGTACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTG : 33561 189 : MetHisMetIleAlaValAlaLeuIleLeuThrSerValTyrValAlaCysAspThrTyr : 208 !:!!! ! !||| ! ! !!!: ! ! !||| !|||!.!..!|||! ! ! GlyTyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAlaAspIleIle 33560 : GGGTACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATT : 33501 209 : LeuValTyrIleVal : 213 :!!:!!:!!:!!||| MetIleHisLeuVal 33500 : ATGATACATCTTGTA : 33484 vulgar: AfOr111 128 213 . LHQN01017803.1 33738 33483 - 117 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33484 33738 117 - . gene_id 11 ; sequence AfOr111 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33484 33738 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33484 33738 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33484 33738 117 - . alignment_id 11 ; Query AfOr111 ; Align 33739 129 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 5 -> 66 Target range: 26868 -> 26685 6 : LeuLeuAsnMetAspLysArgIleIleGluAspGlnTyrLeuLysIleAsnLysPhePhe : 25 :!!|||!..|||||| !! !! :!!||| ! !::||||||!:!||||||||| .!! IleLeuThrMetAspAlaIleThrLeuGluLysArgTyrLeuArgIleAsnLysLysLeu 26868 : ATTTTGACAATGGACGCGATCACGTTAGAGAAACGTTACTTGAGAATCAACAAGAAGCTC : 26811 26 : GlyGlnLeuValGlyValTrpProTyrGlnGlnArgPheThrLysPheCysIleArgPhe : 45 |||..!|||..!||||||||||||||||||:!!!!!! !!|||!:: !! !||| ! GlyMetLeuThrGlyValTrpProTyrGlnLysSerSerProLysTrpIleSerArgThr 26810 : GGTATGCTAACCGGTGTGTGGCCCTATCAAAAGAGCTCGCCAAAATGGATCAGTCGAACC : 26751 46 : IleThrSerValIleValValLeuThrLeuAlaAlaGlnIleSerArgValIleMetPhe : 65 :!!..! ! !!:!!:!!:!!! ! !! !!.!.!!|||:!!...:::::: :::..! ValValLeuPheValIleIleProCysTyrValThrGlnValGluLysIleArgIleIle 26750 : GTAGTGCTCTTTGTAATAATACCTTGTTACGTTACACAGGTAgaaaaaataaggattatC : 26691 66 : Tyr : 66 !:! Phe 26690 : TTT : 26686 vulgar: AfOr111 5 66 . LHQN01017803.1 26868 26685 - 115 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 26686 26868 115 - . gene_id 12 ; sequence AfOr111 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 26686 26868 . - . LHQN01017803.1 exonerate:protein2genome:local exon 26686 26868 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 26686 26868 115 - . alignment_id 12 ; Query AfOr111 ; Align 26869 6 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 452 Query range: 141 -> 380 Target range: 14155 -> 12499 142 : ProMetValProProIleLeuAspIleIleMetProLeuAsnValSerArgLysArgIle : 161 |||:!!..!|||! !||||||||||||:!!:!:||| !|||! !|||||| ! ! ProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAla 14155 : CCGGTGACACCGCATATTTTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCG : 14098 162 : LeuLeuTyrProAlaTyrPheTrpLeuAspAspGluLysTyrTyrValLeuLeuLeuGly : 181 ! !:!!||||||||||||!:!!:: !|||!!:.!.|||||| !!|||! !:!!:!! ! TyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThr 14097 : TACATTTATCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACG : 14038 182 : HisMetIleIleThrIleLeuMetIleCysPheIlePheCysAlaCysAspMetAsnTyr : 201 |||||| !..!||||||:!!:!:! !!:!:!:!:! !|||||||||! !:!||| HisMetAlaSerValIleLeuValValPheTyrValTyrValAlaCysAspThrSerTyr 14037 : CACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTAC : 13978 202 : ValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla{Ly} >>>> Target : 216 :!!|||!.!|||||||||!.!|||||||||||||||:!::!!{ } 26 IleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSer{Gl}++ 13977 : ATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCC{GG}gt............ : 13929 217 : Intron 1 >>>> {s}TyrArgPheLysAsnValCysLysAspLeuAsnAspLysGlu : 230 6 bp {!}||||||!:!||| !!.! ! !!!:|||::!..!::!:!! ++{y}TyrArgTyrLysCysAlaIleValGluLeuSerSerArgLys 13928 : .............ag{A}TATCGTTACAAATGTGCGATCGTGGAATTGTCCAGTCGGAAA : 13625 231 : AspHisAlaMetProLeuGluLysIleLysTyrLysSerIleCysGluSerIleLysAla : 250 :!!::!:!: !!! !!!::!!||| |||!:!!!!:!:|||.!.||||||:!!!.! ArgAsnSerValThrGlnAspGluIle---TyrArgArgValCysHisSerIleGlnGly 13624 : AGGAACAGTGTCACGCAGGATGAAATT---TATAGAAGAGTGTGTCATTCGATTCAAGGA : 13568 251 : HisGlnHisAlaLeuLys<->TyrLeuArgLeuIleGluAsnSerTyrHisThrTyrLeu : 269 ||||||||||||:!!||| |||::: |||...... ... ||| HisGlnHisAlaIleLysSerValLeuLysLysIleArgGlnIleValLeuAsnValLeu 13567 : CACCAGCATGCTATAAAGtcggtattaaaaaagatacgtcaaattgttttaaatgttctt : 13508 270 : PheValSerMetGlyLeuLeuIleMetAla{Il} >>>> Target Intron 2 >>> : 280 .!!:!!|||:!!:!: !{ } 611 bp CysPhePheSerSerMetLeuLeuLeuArg{Pr}++ 13507 : tgctttttttctAGCATGTTACTATTACGC{CC}gt........................ : 13471 281 : > {e}SerValSerLeuLeuGluValAlaAsnGlyLysAsnGlySerArgLysLeuVal : 298 {!}!!!:!! !! ! !:!!|||:!!|||..!:!!! !..!:!!..! ! ! ++{o}ThrIleValTrpLysGlnValSerAsnSerGluIleAsnAlaGluPheAlaLys 13470 : .ag{A}ACAATTGTTTGGAAACAGGTGTCGAACTCGGAGATTAACGCGGAGTTTGCCAAG : 12810 299 : GlnAlaThrPheLeuPheAlaGlnLeuPheHisThrPheIleLeuThrValGlnGlyGln : 318 .!...!||||||:!! ! !|||||| ! |||! !.!! !||||||:!!||||||||| AspCysThrPheIleValIleGlnLeuValHisIleLeuTyrLeuThrLeuGlnGlyGln 12809 : GATTGCACATTTATCGTGATTCAATTGGTACACATACTTTACCTAACTCTTCAAGGACAA : 12750 319 : PheValIleAsnGluLeuGlnAspValTyrGluSer{Il} >>>> Target Intron : 331 |||||||||:!!! ! !:!!!!::!!!:!||||||{||} 62 bp PheValIleAspAlaAsnGluGluIlePheGluSer{Il}++ 12749 : TTCGTGATCGACGCGAACGAGGAAATCTTCGAATCG{AT}gt.................. : 12707 332 : 3 >>>> {e}TyrGluSerProTrpTyrThrPheSerProArgIleArgSerLeuTyr : 347 {|}|||.!.:!! !||||||!.! !..! !|||! !:!||||||!:! ++{e}TyrAsnAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPhe 12706 : .......ag{A}TACAACGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTT : 12601 348 : ValLeuSerLeuArgSerCysLeuAsnPheProIleLeuThrAlaGlyGlyLeuIleVal : 367 ||||||:!!||||||!:!||||||::! !||| !:!!||||||||||||||||||..! ValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThr 12600 : GTATTAGCATTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACA : 12541 368 : LeuAsnLeuGlnSerPheAlaGluIleIleLysAlaAla : 380 :!!|||||||||||||||:!!|||:!!! !::::!!:!! MetAsnLeuGlnSerPheSerGluValThrArgSerSer 12540 : ATGAACTTGCAAAGTTTCTCAGAGGTAACTCGTTCATCG : 12500 vulgar: AfOr112_1 141 380 . LHQN01017803.1 14155 12499 - 452 M 74 222 S 0 2 5 0 2 I 0 262 3 0 2 S 1 1 M 23 69 G 1 0 M 16 48 G 0 3 M 23 69 S 0 2 5 0 2 I 0 607 3 0 2 S 1 1 M 50 150 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 12500 14155 452 - . gene_id 1 ; sequence AfOr112_1 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 13932 14155 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13932 14155 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 13930 13931 . - . intron_id 1 ; splice_site "gt" LHQN01017803.1 exonerate:protein2genome:local intron 13666 13931 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 13666 13667 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 13474 13665 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13474 13665 . - . insertions 3 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local splice5 13472 13473 . - . intron_id 2 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 12863 13473 . - . intron_id 2 LHQN01017803.1 exonerate:protein2genome:local splice3 12863 12864 . - . intron_id 1 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 12710 12862 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12710 12862 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 12708 12709 . - . intron_id 3 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 12648 12709 . - . intron_id 3 LHQN01017803.1 exonerate:protein2genome:local splice3 12648 12649 . - . intron_id 2 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 12500 12647 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12500 12647 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 12500 14155 452 - . alignment_id 1 ; Query AfOr112_1 ; Align 14156 142 222 ; Align 13665 217 69 ; Align 13596 241 48 ; Align 13545 257 69 ; Align 12862 281 150 ; Align 12647 332 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 321 Query range: 254 -> 389 Target range: 25680 -> 24792 255 : LeuLysTyrLeuArgLeuIleGluAsnSerTyrHisThrTyrLeuPheValSerMetGly : 274 !!!!:!|||:!!!:! !||| ! !:!!:!! !!|||! !:!!|||:!!|||:!!||| PheArgTyrValLysGluIleThrAlaAlaHisAspThrCysMetPheIleSerValGly 25680 : TTCAGATACGTGAAAGAGATCACGGCCGCTCACGATACTTGCATGTTCATCTCGGTGGGA : 25623 275 : LeuLeuIleMetAlaIleSerValSerLeuLeuGlu >>>> Target Intron 1 > : 287 ||||||!!:|||::!||||||..!|||||||||:!! 92 bp LeuLeuMetMetSerIleSerThrSerLeuLeuGln++ 25622 : CTGCTGATGATGAGCATCAGCACTTCGTTGTTGCAGgt...................... : 25582 288 : >>> ValAlaAsnGlyLysAsnGlySerArgLysLeuValGlnAlaThrPheLeuPheA : 305 :!!:!!.!. !:!!:!!! !:!!..! ! !:!! ! ..!||||||!!! | ++IleSerGluHisGluHisAspAlaGluTrpThrLeuTyrCysThrPhePheThrA 25581 : ...agATATCAGAACACGAACACGACGCAGAATGGACATTGTACTGCACGTTCTTCACGG : 25438 306 : laGlnLeuPheHisThrPheIleLeuThrValGlnGlyGlnPheValIleAsnGluLeuG : 325 ||||||||!!.|||! !.!..!!|||..!||||||||||||||||||:!::!!! !! !. laGlnLeuLeuHisMetLeuPheLeuValValGlnGlyGlnPheValLeuAspAlaTyrA 25437 : CCCAGTTGTTACACATGCTGTTCTTAGTCGTTCAGGGGCAGTTCGTGTTGGACGCGTACG : 25378 326 : lnAspValTyrGluSer{Il} >>>> Target Intron 2 >>>> {e}TyrGluS : 334 !.|||||||||.!.!!!{||} 314 bp {|}||||||| spAspValTyrAsnThr{Il}++ ++{e}TyrGluS 25377 : ACGATGTTTATAATACG{AT}gt.........................ag{A}TACGAAT : 25037 335 : erProTrpTyrThrPheSerProArgIleArgSerLeuTyrValLeuSerLeuArgSerC : 354 || !!||||||!.!! !||| !!:!! !:!:!!||||||:!!|||:!!||||||||| erThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeuArgSerS 25036 : CGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTACGGAGTA : 24977 355 : ysLeuAsnPheProIleLeuThrAlaGlyGlyLeuIleValLeuAsnLeuGlnSerPheA : 374 !!|||||| !|||:!:|||||||||||||||!!!|||..!|||||||||:!!!!!|||: erLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLysThrPheS 24976 : GCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAGACCTTCT : 24917 375 : laGlu >>>> Target Intron 3 >>>> IleIleLysAlaAlaValSerTyrTy : 384 !!||| 77 bp |||||||||:!!:!!||||||||||| erGlu++ ++IleIleLysSerSerValSerTyrTy 24916 : CAGAGgt.........................agATTATAAAATCATCCGTGTCTTACTA : 24810 385 : rThrValMetGlnThr : 389 |||||||||||||:!! rThrValMetGlnSer 24809 : TACGGTGATGCAATCG : 24793 vulgar: AfOr112_1 254 389 . LHQN01017803.1 25680 24792 - 321 M 32 96 5 0 2 I 0 88 3 0 2 M 44 132 S 0 2 5 0 2 I 0 310 3 0 2 S 1 1 M 44 132 5 0 2 I 0 73 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 24793 25680 321 - . gene_id 2 ; sequence AfOr112_1 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 25585 25680 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25585 25680 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 25583 25584 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 25493 25584 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 25493 25494 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 25359 25492 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25359 25492 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 25357 25358 . - . intron_id 2 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 25045 25358 . - . intron_id 2 LHQN01017803.1 exonerate:protein2genome:local splice3 25045 25046 . - . intron_id 1 ; splice_site "aG" LHQN01017803.1 exonerate:protein2genome:local cds 24912 25044 . - . LHQN01017803.1 exonerate:protein2genome:local exon 24912 25044 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 24910 24911 . - . intron_id 3 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 24835 24911 . - . intron_id 3 LHQN01017803.1 exonerate:protein2genome:local splice3 24835 24836 . - . intron_id 2 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 24793 24834 . - . LHQN01017803.1 exonerate:protein2genome:local exon 24793 24834 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 24793 25680 321 - . alignment_id 2 ; Query AfOr112_1 ; Align 25681 255 96 ; Align 25493 287 132 ; Align 25044 332 132 ; Align 24835 376 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 290 Query range: 128 -> 215 Target range: 26252 -> 25991 129 : LeuHisIleGlyIleThrGluThrPheMetLeuMetTrpProMetValProProIleLeu : 148 :!!||||||..!:!! !! .!!.!..!.:!! ! !|||.!.||| !!||||||||| ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeu 26252 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTG : 26195 149 : AspIleIleMetProLeuAsnValSerArgLysArgIleLeuLeuTyrProAlaTyrPhe : 168 ||||||:!!||||||||||||! !!!!||| !|||:!:!!!:!!||||||||||||!:! AspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyr 26194 : GACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTAT : 26135 169 : TrpLeuAspAspGluLysTyrTyrValLeuLeuLeuGlyHisMetIleIleThrIleLeu : 188 !:::!!|||!!:!!:||||||:!! !|||:!!:!!||||||||| !:!!..!:!::!! PheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValVal 26134 : TTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTA : 26075 189 : MetIleCysPheIlePheCysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAla : 208 |||:!! !! !:!!||||||||||||||| ||||||||||||||||||||||||||| MetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAla 26074 : ATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCT : 26015 209 : CysGlyLeuLeuAlaIleAla : 215 ||||||||||||||||||||| CysGlyLeuLeuAlaIleAla 26014 : TGCGGATTGTTGGCCATTGCA : 25992 vulgar: AfOr112_1 128 215 . LHQN01017803.1 26252 25991 - 290 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25992 26252 290 - . gene_id 3 ; sequence AfOr112_1 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25992 26252 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25992 26252 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25992 26252 290 - . alignment_id 3 ; Query AfOr112_1 ; Align 26253 129 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 237 Query range: 213 -> 390 Target range: 18116 -> 16903 214 : IleAlaLysTyrArgPheLysAsnValCysLysAspLeuAsnAsp<->LysGluAspHis : 232 :!! !!:!||||||||||||||| ! !:::!!: !|||..! |||! ! ! :!! ValArgArgTyrArgPheLysAsnSerIleArgGluAspAsnSerValLysGlyLysTyr 18116 : GTTCGCAGATACCGCTTCAAGAATTCAATTCGCGAGGACAATAGCGTGAAGGGGAAGTAT : 18059 233 : AlaMetProLeuGluLysIleLysTyrLysSerIleCysGluSerIleLysAlaHisGln : 252 ! ! !! ! !||| !||||||!:! ||| ||||||:!!!.!|||||| PheAspHisTrpThrLysGluAlaTyrLysAsnAlaCysPheSerIleGlnGlyHisGln 18058 : TTCGACCACTGGACGAAAGAGGCGTACAAGAACGCGTGTTTCTCCATTCAGGGACATCAA : 17999 253 : HisAlaLeuLysTyrLeuArgLeuIleGluAsnSerTyrHisThrTyrLeu >>>> Ta : 270 !.!|||:!!|||! :!! ! !||| ...:::... ArgAlaIleLysSerValPheThrIlePheValCysLeuPheValPhePhe++ 17998 : CGTGCTATAAAGTCAGTATTCACGAtctttgtttgtttgtttgtttttttcgt....... : 17943 271 : rget Intron 1 >>>> PheValSerMetGlyLeuLeuIleMetAlaIleSerValS : 283 194 bp !:!:!!||| !!|||::: ...|||::: +-TyrIleSerArgCysLeuIleCysGlyAsnPheSerLeuP 17942 : ..................acTACATTTCGCGTTGTTTAAtctgtggaaatttttcactgt : 17712 284 : erLeuLeuGluValAlaAsnGlyLysAsnGlySerArgLysLeuValGlnAlaThrPheL : 303 !:!!:!!::!!....! ! !! !! ! ! ! ! ! ! ..!!:!||| heSerAsnGlnLeuSerThrSerAspPheAspIleAspPheTyrArgTyrCysSerPheT 17711 : tttcaaATCAGCTGAGTACGTCGGATTTCGACATAGACTTCTACAGATATTGCAGTTTTA : 17652 304 : euPheAlaGlnLeuPheHisThrPheIleLeuThrValGlnGlyGlnPheValIleAsnG : 323 !!!...!||||||.!.||| !|||:!!:!!! !:!!|||||||||||||||:!::!!. hrLeuCysGlnLeuMetHisLeuPheValIleMetLeuGlnGlyGlnPheValLeuAspS 17651 : CGTTGTGTCAACTGATGCACCTGTTCGTTATCATGCTTCAGGGACAGTTCGTGCTGGATT : 17592 324 : luLeuGlnAspValTyrGluSer{Il} >>>> Target Intron 2 >>>> {e}T : 332 .!! !:!! :!!:!!|||:!!{||} 402 bp {|}| erCysGluArgIleHisGluAla{Il}++ ++{e}T 17591 : CGTGCGAGAGAATTCACGAGGCG{AT}gt.........................ag{A}T : 17163 333 : yrGluSerProTrpTyrThrPheSerProArgIleArgSerLeuTyrValLeuSerLeuA : 352 |||||||| !||||||||| !||| !!!:!! !!:!:!!|||||||||:!!:!!|||| yrGluSerLeuTrpTyrThrSerSerSerLysThrGlnAlaLeuTyrValValAlaLeuA 17162 : ACGAATCATTATGGTACACAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCGTTAC : 17103 353 : rgSerCysLeuAsnPheProIleLeuThrAlaGlyGlyLeuIleValLeuAsnLeuGlnS : 372 ||!!! !|||!.. ! !! !||||||||||||||||||:!: !||||||:!!|||| rgArgAsnLeuThrProThrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMetGlnS 17102 : GAAGAAACCTAACACCTACCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATGCAAA : 17043 373 : erPheAlaGlu >>>> Target Intron 3 >>>> IleIleLysAlaAlaValSe : 382 ||||||||||| 83 bp :!::!!||| !:!!||||| erPheAlaGlu++ ++ValValLysMetSerValSe 17042 : GCTTCGCAGAGgt.........................agGTGGTAAAAATGTCCGTTTC : 16930 383 : rTyrTyrThrValMetGlnThrThr : 390 |||||||||||||:!!:!!|||||| rTyrTyrThrValLeuLysThrThr 16929 : CTATTATACGGTGTTGAAGACAACG : 16904 vulgar: AfOr112_1 213 390 . LHQN01017803.1 18116 16903 - 237 M 15 45 G 0 3 M 41 123 5 0 2 I 0 190 3 0 2 M 61 183 S 0 2 5 0 2 I 0 398 3 0 2 S 1 1 M 44 132 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 16904 18116 237 - . gene_id 4 ; sequence AfOr112_1 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 17946 18116 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17946 18116 . - . insertions 3 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 17944 17945 . - . intron_id 1 ; splice_site "gt" LHQN01017803.1 exonerate:protein2genome:local intron 17752 17945 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 17752 17753 . - . intron_id 0 ; splice_site "AC" LHQN01017803.1 exonerate:protein2genome:local cds 17567 17751 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17567 17751 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 17565 17566 . - . intron_id 2 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 17165 17566 . - . intron_id 2 LHQN01017803.1 exonerate:protein2genome:local splice3 17165 17166 . - . intron_id 1 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 17032 17164 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17032 17164 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 17030 17031 . - . intron_id 3 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 16949 17031 . - . intron_id 3 LHQN01017803.1 exonerate:protein2genome:local splice3 16949 16950 . - . intron_id 2 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 16904 16948 . - . LHQN01017803.1 exonerate:protein2genome:local exon 16904 16948 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 16904 18116 237 - . alignment_id 4 ; Query AfOr112_1 ; Align 18117 214 45 ; Align 18069 229 123 ; Align 17752 270 183 ; Align 17164 332 132 ; Align 16949 376 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 187 Query range: 299 -> 388 Target range: 32972 -> 32577 300 : AlaThrPheLeuPheAlaGlnLeuPheHisThrPheIleLeuThrValGlnGlyGlnPhe : 319 ..!|||||||||.!!|||||| ! ! |||! !.!..!!||||||:!!|||||||||||| CysThrPheLeuIleAlaGlnThrValHisMetLeuPheLeuThrIleGlnGlyGlnPhe 32972 : TGCACGTTCCTGATCGCACAAACTGTACACATGCTGTTTTTGACGATTCAGGGACAGTTC : 32915 320 : ValIleAsnGluLeuGlnAspValTyrGluSerIleTyr >>>> Target Intron : 333 ||||||:!!..!! !.!. ||||||.!. ! ! 30 bp ValIleAspSerHisAspThrValTyrAsnValCysMet++ 32914 : GTGATCGATTCGCATGATACAGTGTACAATGTGTGTATGgt................... : 32871 334 : 1 >>>> GluSerProTrpTyrThrPheSerProArgIleArgSerLeuTyrValLeuS : 350 |||:!! !||||||! !.!. !!|||!:!:!!!:!! !||| !!|||:!!: +-GluAlaIleTrpTyrLysMetProProLysLeuGlnLeuLeuAspValValA 32870 : ......acGAGGCAATTTGGTATAAGATGCCACCTAAACTTCAGTTGCTAGACGTTGTAG : 32792 351 : erLeuArgSerCysLeuAsnPheProIleLeuThrAlaGlyGlyLeuIleValLeuAsnL : 370 !!||||||!.! !!|||!.! !||||||||||||||||||||||||!!: !|||:!!| laLeuArgLysSerLeuThrProProIleLeuThrAlaGlyGlyLeuMetArgLeuAspL 32791 : CGCTTAGAAAAAGCCTAACTCCTCCTATACTGACGGCGGGAGGGTTGATGCGGTTAGATT : 32732 371 : euGlnSerPheAlaGlu >>>> Target Intron 2 >>>> IleIleLysAlaAl : 380 ||.!.|||||||||:!! 98 bp ::::!:||||||.. euAsnSerPheAlaGln++ ++LeuLeuLysAlaCy 32731 : TGAATTCTTTCGCACAGgt.........................agctaCTGAAAGCTTG : 32604 381 : aValSerTyrTyrThrValMetGln : 388 !|||||||||||||||!.!:!!!:! sValSerTyrTyrThrAlaLeuArg 32603 : CGTCTCGTATTATACGGCACTGCGA : 32578 vulgar: AfOr112_1 299 388 . LHQN01017803.1 32972 32577 - 187 M 33 99 5 0 2 I 0 26 3 0 2 M 43 129 5 0 2 I 0 94 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 32578 32972 187 - . gene_id 5 ; sequence AfOr112_1 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 32874 32972 . - . LHQN01017803.1 exonerate:protein2genome:local exon 32874 32972 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 32872 32873 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 32844 32873 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 32844 32845 . - . intron_id 0 ; splice_site "AC" LHQN01017803.1 exonerate:protein2genome:local cds 32715 32843 . - . LHQN01017803.1 exonerate:protein2genome:local exon 32715 32843 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 32713 32714 . - . intron_id 2 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 32617 32714 . - . intron_id 2 LHQN01017803.1 exonerate:protein2genome:local splice3 32617 32618 . - . intron_id 1 ; splice_site "ag" LHQN01017803.1 exonerate:protein2genome:local cds 32578 32616 . - . LHQN01017803.1 exonerate:protein2genome:local exon 32578 32616 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 32578 32972 187 - . alignment_id 5 ; Query AfOr112_1 ; Align 32973 300 99 ; Align 32844 333 129 ; Align 32617 376 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 177 Query range: 142 -> 215 Target range: 29592 -> 29373 143 : MetValProProIleLeuAspIleIleMetProLeuAsnValSerArgLysArgIleLeu : 162 !!:..!|||! !:!!||||||:!!||| !||| !|||! !|||||| ! ! !!!! IleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValGlyPhe 29592 : ATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTGGGCTTC : 29535 163 : LeuTyrProAlaTyrPheTrpLeuAspAspGluLysTyrTyrValLeuLeuLeuGlyHis : 182 :!!||||||||| !!!:! ! :!!|||!!:|||:!!:!!||| !! !|||:!!|||||| IleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyrTyrTyrLeuMetGlyHis 29534 : ATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTACTACTATCTGATGGGTCAC : 29475 183 : MetIleIleThrIleLeuMetIleCysPheIlePheCysAlaCysAspMetAsnTyrVal : 202 |||:!! !..!||| !:!::!:! !|||:!!!:! !:!!||||||! !! !|||:!! MetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMet 29474 : ATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATCTACATG : 29415 203 : TyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla : 215 !! !|||||||||||||||||||||||| !:!!:!! AsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSer 29414 : AATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCT : 29374 vulgar: AfOr112_1 142 215 . LHQN01017803.1 29592 29373 - 177 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29374 29592 177 - . gene_id 6 ; sequence AfOr112_1 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29374 29592 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29374 29592 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 29374 29592 177 - . alignment_id 6 ; Query AfOr112_1 ; Align 29593 143 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 148 Query range: 313 -> 376 Target range: 28710 -> 28521 314 : ThrValGlnGlyGlnPheValIleAsnGluLeuGlnAspValTyrGluSerIleTyrGlu : 333 ...::: .!!....!!||| !.....!!!!|||!!::!!!:!! !!! !|||... AlaIleIleSerSerIleValProArgArgPheGlnGluLeuPheValArgArgTyrSer 28710 : gcaattATCAGTTCTATCGTACCTCGAAGATTTCAGGAGTTGTTCGTTCGCAGATATAGC : 28653 334 : SerProTrpTyrThrPheSerProArgIleArgSerLeuTyrValLeuSerLeuArgSer : 353 :!! !||||||!.! !|||||||||! !:!!!!||||||||||||:!!||||||!!! AlaLysTrpTyrAsnSerSerProArgThrGlnThrLeuTyrValLeuAlaLeuArgArg 28652 : GCAAAATGGTACAACAGTTCGCCGAGAACGCAAACTCTGTACGTGCTAGCTTTGAGGAGG : 28593 354 : CysLeuAsnPheProIleLeuThrAlaGlyGlyLeuIleValLeuAsnLeuGlnSerPhe : 373 !!|||!.! |||:!:||||||||||||||||||||| !|||||||||:!!!!!||| SerLeuThrProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPhe 28592 : AGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGATTTCCTTGAATTTGGAGACTTTT : 28533 374 : AlaGluIle : 376 ||||||::: AlaGluVal 28532 : GCCGaggta : 28522 vulgar: AfOr112_1 313 376 . LHQN01017803.1 28710 28521 - 148 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 28522 28710 148 - . gene_id 7 ; sequence AfOr112_1 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 28522 28710 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28522 28710 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 28522 28710 148 - . alignment_id 7 ; Query AfOr112_1 ; Align 28711 314 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 147 Query range: 154 -> 215 Target range: 18372 -> 18189 155 : AsnValSerArgLysArgIleLeuLeuTyrProAlaTyrPheTrpLeuAspAspGluLys : 174 |||:!!!!!! !!.. ! !:!!:!! |||!.!|||!:!!:::!!|||!!:! !:!! AsnIleThrProSerLeuProValValValProGlyTyrTyrPheValAspGluValGlu 18372 : AATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAA : 18315 175 : TyrTyrValLeuLeuLeuGlyHisMetIleIleThrIleLeuMetIleCysPheIlePhe : 194 |||||| !! !:!!:!! !||| ! !|||||||||!!::!! ! :!:!:! TyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyr 18314 : TACTATTATTACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTAC : 18255 195 : CysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle : 214 ||||||||||||! !:!|||:!! !|||||||||.!!|||||||||!!!|||:!: CysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaVal 18254 : TGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTG : 18195 215 : Ala : 215 ||| Ala 18194 : GCC : 18190 vulgar: AfOr112_1 154 215 . LHQN01017803.1 18372 18189 - 147 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18190 18372 147 - . gene_id 8 ; sequence AfOr112_1 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18190 18372 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18190 18372 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18190 18372 147 - . alignment_id 8 ; Query AfOr112_1 ; Align 18373 155 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 143 Query range: 331 -> 385 Target range: 22422 -> 22260 332 : TyrGluSerProTrpTyrThrPheSerProArgIleArgSerLeuTyrValLeuSerLeu : 351 ||||||||| !!||||||!.!! !||| !!:!! !:!:!!||||||:!!|||:!!||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeu 22422 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTA : 22365 352 : ArgSerCysLeuAsnPheProIleLeuThrAlaGlyGlyLeuIleValLeuAsnLeuGln : 371 |||||| !!|||||| !|||:!:|||||||||||||||!!!|||..!|||||||||:!! ArgSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLys 22364 : CGGAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAG : 22305 372 : SerPheAlaGluIleIleLysAlaAlaValSerTyrTyrThr : 385 !!!|||:!!|||:!!! ! ! !:!!..! !!|||:!! ThrPheSerGluValThrTrpArgGlnIleGlnAspTyrSer 22304 : ACCTTCTCAGAGGTAACGTGGCGACAAATACAAGATTACTCG : 22261 vulgar: AfOr112_1 331 385 . LHQN01017803.1 22422 22260 - 143 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 22261 22422 143 - . gene_id 9 ; sequence AfOr112_1 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 22261 22422 . - . LHQN01017803.1 exonerate:protein2genome:local exon 22261 22422 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 22261 22422 143 - . alignment_id 9 ; Query AfOr112_1 ; Align 22423 332 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 0 -> 50 Target range: 26859 -> 26709 1 : MetAspAlaArgThrValGluLysAsnPheLeuLysValAsnLysIlePheGlyLeuIle : 20 |||||||||! !|||:!!||||||..!!:!|||!:!:!!||||||! .!!|||:!!:!! MetAspAlaIleThrLeuGluLysArgTyrLeuArgIleAsnLysLysLeuGlyMetLeu 26859 : ATGGACGCGATCACGTTAGAGAAACGTTACTTGAGAATCAACAAGAAGCTCGGTATGCTA : 26802 21 : ThrGlyValTrpProTyrGlnAsnTyrArgMetLysMetAlaGluArgPheLeuSerVal : 40 |||||||||||||||||||||!!. ! ! ||| ! !...||| !:!! !:!! ThrGlyValTrpProTyrGlnLysSerSerProLysTrpIleSerArgThrValValLeu 26801 : ACCGGTGTGTGGCCCTATCAAAAGAGCTCGCCAAAATGGATCAGTCGAACCGTAGTGCTC : 26742 41 : ThrValMetMetSerGlyPheValThrGln : 50 !|||!!:!!: !! !!!:!||||||||| PheValIleIleProCysTyrValThrGln 26741 : TTTGTAATAATACCTTGTTACGTTACACAG : 26710 vulgar: AfOr112_1 0 50 . LHQN01017803.1 26859 26709 - 121 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 26710 26859 121 - . gene_id 10 ; sequence AfOr112_1 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 26710 26859 . - . LHQN01017803.1 exonerate:protein2genome:local exon 26710 26859 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 26710 26859 121 - . alignment_id 10 ; Query AfOr112_1 ; Align 26860 1 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 331 -> 376 Target range: 475 -> 340 332 : TyrGluSerProTrpTyrThrPheSerProArgIleArgSerLeuTyrValLeuSerLeuArgS : 353 |||!!::!! !||||||!.! !!!!! !||| !:!! !||||||:!!|||:!!||||||! TyrAspAlaValTrpTyrAsnSerThrGlnArgSerGlnIleLeuTyrLeuLeuAlaLeuArgA 475 : TACGATGCAGTATGGTACAACAGTACGCAGCGATCGCAAATTTTGTACCTGTTAGCTTTAAGGA : 412 354 : erCysLeuAsnPheProIleLeuThrAlaGlyGlyLeuIleValLeuAsnLeuGlnSerPheAl : 374 !!! !|||!.! |||:!:|||:!!||||||||||||||| !||||||:!!:!!!!!|||:! rgSerLeuThrProProLeuLeuSerAlaGlyGlyLeuIleSerLeuAsnMetGluThrPheSe 411 : GGTCTTTAACTCCACCACTGCTTTCTGCAGGAGGACTGATTTCGTTGAATATGGAAACTTTTTC : 349 375 : aGluIle : 376 !:!!:!! rLysVal 348 : GAAGGTA : 341 vulgar: AfOr112_1 331 376 . LHQN01017803.1 475 340 - 112 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 341 475 112 - . gene_id 11 ; sequence AfOr112_1 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 341 475 . - . LHQN01017803.1 exonerate:protein2genome:local exon 341 475 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 341 475 112 - . alignment_id 11 ; Query AfOr112_1 ; Align 476 332 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr105 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 158 Query range: 156 -> 242 Target range: 26231 -> 25976 157 : ValIlePheLeuSerLeuProLeuCysAsnProIleLeuAspIleIleLeuProLeuAsn : 176 !.!:!!|||:!!!!!||||||!!! :::|||||||||||||||:!!:!!||||||||| AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsn 26231 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAAC : 26174 177 : GluThrArgProArgGlnAsnIlePheAsnValAsnTyrIleIleLeuAspAsnTyrGlu : 196 ||||||||| !!||| ! !:!!!:! !.! !!|||.!!:!! |||.!. !!:!! GluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal---AspGluAspLys 26173 : GAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC---GACGAGGACAAA : 26117 197 : TyrPheTyrIleValTyrValHisLeuSerCysSerAlaAlaIleIleValIleIleIle : 216 ||| !|||:!::!! ! !|||:!!! ! ! !!.!!.!!!::!!:!! !:!!.!! TyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPhe 26116 : TATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTC : 26057 217 : IleSerValAspSerLeuTyrIleSerIleIleTyrHisAlaCysGlyLeuPheAlaAla : 236 !:!! !|||:!! !|||:!:! ! !:!: ! |||||||||||||||!!.||| ! CysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 26056 : TGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 25997 237 : CysGlyTyrGlnIleGln : 242 ...|||!! !:!!||| AlaGly***LeuValGln 25996 : GCAGGGTAATTAGTTCAA : 25977 vulgar: AfOr105 156 242 . LHQN01017803.1 26231 25976 - 158 M 35 105 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25977 26231 158 - . gene_id 1 ; sequence AfOr105 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25977 26231 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25977 26231 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25977 26231 158 - . alignment_id 1 ; Query AfOr105 ; Align 26232 157 105 ; Align 26127 193 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr105 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 133 -> 242 Target range: 14242 -> 13918 134 : LeuAspLysPheThrGlnTyrGlySerLysLeuAlaLeuLeuTyrArgLysSerLeuLeu : 153 |||:!! ! ||| ||| !!!! ! :!!!.! !! !! ! ! !!:! !:!! LeuAsnAspGlnThrValTyrPheThrTyrIleValLysTyrSerIleAlaAsnAlaIle 14242 : TTAAACGACCAAACTGTTTATTTTACGTACATTGTCAAATATTCGATAGCGAACGCGATC : 14185 154 : ThrPheLeuValIlePheLeuSerLeuProLeuCysAsnProIleLeuAspIleIleLeu : 173 ..!! !:!!:!!:!:|||:!!||| !|||:!! ! !||||||||||||:!!||| ValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeu 14184 : GTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTA : 14125 174 : ProLeuAsnGluThrArgProArgGlnAsnIlePheAsnValAsnTyrIleIleLeuAsp : 193 ||| !||||||:!!||| ! ! ! !!|||!:! !.! ||| !.!! !||| ProLysAsnGluSerArgAspValAlaTyrIleTyrProAla---TyrTyrPheThrAsp 14124 : CCGAAGAACGAGTCACGAGACGTAGCGTACATTTATCCGGCC---TATTATTTCACCGAC : 14068 194 : AsnTyrGluTyrPheTyrIleValTyrValHisLeuSerCysSerAlaAlaIleIleVal : 213 .!.:!!:!!||| ! !:!! !..!|||:!!:!!! ! ! ! !:!::!: !! GluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPhe 14067 : GAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTT : 14008 214 : IleIleIleIleSerValAspSerLeuTyrIleSerIleIleTyrHisAlaCysGlyLeu : 233 !:!: !:!!:!! !|||!!! !||||||! !:!!:!: ! |||!.!||||||||| TyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeu 14007 : TACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTG : 13948 234 : PheAlaAlaCysGlyTyrGlnIleGln : 242 !!.|||!.!! !||| :::|||::: LeuAlaValSerGly***LysIleArg 13947 : TTGGCCGTGTCCGGgtaaaaaattcga : 13919 vulgar: AfOr105 133 242 . LHQN01017803.1 14242 13918 - 135 M 54 162 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13919 14242 135 - . gene_id 2 ; sequence AfOr105 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13919 14242 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13919 14242 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 13919 14242 135 - . alignment_id 2 ; Query AfOr105 ; Align 14243 134 162 ; Align 14081 189 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr105 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 187 -> 238 Target range: 18339 -> 18186 188 : AsnTyrIleIleLeuAspAsnTyrGluTyrPheTyrIleValTyrValHisLeuSerCys : 207 ...||| !.!!:!!|||.!. ||||||!:!||| !:!! :!!||| !!!!||| GlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCys 18339 : GGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGC : 18282 208 : SerAlaAlaIleIleValIleIleIleIleSerValAspSerLeuTyrIleSerIleIle : 227 !!! ! !|||:!!|||:!::!: ! !:!! !|||!!! !|||!!: !:!::!: ThrIleLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuVal 18281 : ACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTG : 18222 228 : TyrHisAlaCysGlyLeuPheAlaAlaCysGly : 238 ! |||.!!|||||||||||||||!.!..!||| GlnHisThrCysGlyLeuPheAlaValAlaGly 18221 : CAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 18187 vulgar: AfOr105 187 238 . LHQN01017803.1 18339 18186 - 122 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18187 18339 122 - . gene_id 3 ; sequence AfOr105 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18187 18339 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18187 18339 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18187 18339 122 - . alignment_id 3 ; Query AfOr105 ; Align 18340 188 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr117 Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 1438 Query range: 0 -> 404 Target range: 4393578 -> 4395880 1 : MetLysLysProPheAsnLysSerIleAspTyrTyrIleLeuProAsnLysIlePh : 19 ||||||:!!! !! !!!. !||||||||||||||||||||||||||||||||||| MetLysGluLeuSerLysAlaSerIleAspTyrTyrIleLeuProAsnLysIlePh 4393579 : ATGAAAGAACTCTCTAAAGCGTCGATCGATTATTATATACTACCGAACAAGATCTT : 4393633 20 : eCysSerIleAlaGlyMetTrpProIleAspGluLysSerSerMetPheSerLysI : 38 |||||||||||||||||||||||||||||||||||||||||||! ! !||||||: eCysSerIleAlaGlyMetTrpProIleAspGluLysSerSerThrArgSerLysL 4393634 : TTGTAGTATAGCTGGAATGTGGCCTATCGACGAGAAAAGTTCAACGCGTAGCAAAC : 4393690 39 : lePheAlaTyrValArgLeuIlePheGlyLeuIleValValSerSerPhePheIle : 56 !!||||||||| !!||||||||||||||||||! !.!:!!|||||| !!|||:!: euPheAlaTyrPheArgLeuIlePheGlyLeuThrAlaIleSerSerValPheVal 4393691 : TATTCGCATACTTCCGTCTGATATTCGGATTAACGGCAATCAGTAGTGTCTTCGTG : 4393744 57 : ProGluIleIleIleIleAlaMetAsnTrpLysAsnIleLysIleIleAla{G} : 74 |||||||||!!: |||!.! !|||||| :!!|||!:!|||:!:|||{|} ProGluIleMetAlaIleValTrpAsnTrpGlyAspIleArgIleLeuAla{G}+- 4393745 : CCAGAAATTATGGCGATAGTGTGGAATTGGGGTGACATAAGAATCTTGGCA{G}gc : 4393799 75 : >>>> Target Intron 1 >>>> {ly}IleGlyCysValLeuThrThrIleT : 83 311 bp {||}:!!||||||||||||||||||:!! ++{ly}ValGlyCysValLeuThrThrValG 4393800 : .........................ag{GA}GTAGGATGCGTTTTAACAACAGTCG : 4394136 84 : hrGlnValLeuPheLysMetLeuTyrLeuIleValArgArgGluLysThrTyrSer : 101 !|||:::||||||||||||:!!|||||||||!.!||||||!!:|||||||||!.! lyGlnLeuLeuPheLysMetIleTyrLeuIleAlaArgArgAspLysThrTyrLys 4394137 : GACagttattattcaaaatgATTTACCTAATAGCGAGAAGGGACAAAACGTACAAG : 4394190 102 : LeuTyrTyrLysIleArgSerLeuTrpAsnSerSerAsnAspSerLysGluArg<- : 120 |||! ! !!:!!||||||..!||||||:!!||||||:!!||| !!||||||||| LeuCysAsnGluIleArgAspLeuTrpAspSerSerAspAspProLysGluArgGl 4394191 : CTTTGCAACGAAATACGTGATCTATGGGATTCATCCGATGATCCAAAAGAAAGACA : 4394247 121 : >ProTyrGluGluPheAlaTyrTrpAlaArgIlePheSerIleIlePheTyrSerS : 138 !!|||||||||.!!|||:!!|||||||||! !.!!!!!|||||||||||||||| nSerTyrGluGluLeuAlaHisTrpAlaArgAsnLeuThrIleIlePheTyrSerS 4394248 : GTCCTACGAAGAGCTCGCTCATTGGGCAAGAAACCTTACGATAATCTTTTACTCGT : 4394304 139 : erCysMetCysAsnValPheThrPheSerIleAlaAlaAlaIleAspTyrPheLys : 156 ||||||||||||||||||||||||||!!!||||||||||||.!!|||||||||! ! erCysMetCysAsnValPheThrPheThrIleAlaAlaAlaPheAspTyrPheThr 4394305 : CCTGCATGTGCAACGTGTTCACATTCACGATTGCCGCAGCCTTCGATTATTTCACG : 4394358 157 : PheGluTyrAsnAlaAsnAsnThrGluAsnAsnArgHisLeuProPheIle >>> : 174 .!!||||||!:!!.!!:!:!!.!!!!:!!.!:!||||||||||||||| ! IleGluTyrSerValSerAspAlaAspLysSerArgHisLeuProPheGlu++ 4394359 : ATCGAATACAGCGTCAGCGATGCTGATAAAAGTCGACACTTGCCCTTCGAAgt... : 4394414 175 : > Target Intron 2 >>>> ValCysIleIleThrArgTyrGlyThrAspIl : 184 177 bp ! ! !!: !|||||||||! !||||| -+TyrLeuThrMetPheArgTyrGlyIleAspIl 4394415 : ......................ggTATCTAACGATGTTTAGGTATGGAATAGACAT : 4394619 185 : eSerAlaSerProAsnPheGluIleAlaPhePheTyrGlnIleIleSerAlaSerI : 203 |!!! !!||||||..!|||||||||||||||.!!! !||||||:!!:!!:!!! !| eThrProSerProArgPheGluIleAlaPheLeuCysGlnIleValAlaSerMetI 4394620 : CACACCGTCTCCTCGCTTCGAGATCGCTTTCCTTTGTCAAATCGTAGCATCTATGA : 4394676 204 : leCysAlaAlaValIleSerGlyLeuAspThrSerLeuMetThrIleIleLeuHis : 221 |||||||||||!.!|||||||||||||||.!!!!!!!!||||||! ||||||||| leCysAlaAlaAlaIleSerGlyLeuAspAlaThrPheMetThrThrIleLeuHis 4394677 : TCTGCGCAGCCGCGATCTCAGGCTTGGACGCGACGTTTATGACCACGATTCTACAC : 4394730 222 : IleSerGlyGlnPheLysLeuIleAsnIleTrpIleAsnAsnIleGlyIleGluIl : 240 :!:||||||||||||||||||||||||! !||||||!:!!!.|||||||||||||| ValSerGlyGlnPheLysLeuIleAsnArgTrpIleSerLysIleGlyIleGluIl 4394731 : GTGTCTGGTCAATTCAAATTGATCAACAGATGGATCAGTAAGATTGGAATAGAGAT : 4394787 241 : eAsnCysAsnProAsnTyrIleArgLysLeuLysIleAspLeuIleLysCysIleA : 259 |||| !.!.|||:!!||| |||||||||||| :!!|||||||||||||||| eAsnIleGluProAspTyrProArgLysLeuLysAlaAsnLeuIleLysCysIleA 4394788 : AAATATCGAGCCCGATTATCCGCGAAAATTAAAAGCGAATCTGATCAAATGCATTC : 4394844 260 : rgHisHisGlnGlnIleIle{Hi} >>>> Target Intron 3 >>>> {s} : 266 |||||||||||!:!!!:|||{:!} 131 bp {!} rgHisHisGlnArgMetIle{As}++ ++{n} 4394845 : GCCATCACCAACGAATGATA{AA}gt.........................ag{C} : 4394998 267 : ValValAsnAsnValAsnAsnLeuPheThrProIleIlePheIleGlnLeuLeuTh : 285 |||||||||:::||||||||||||...|||||||||||||||!!:||||||||||| ValValAsnAspValAsnAsnLeuLeuThrProIleIlePheMetGlnLeuLeuTh 4394999 : GTTGTGAACGacgtgaataatttattaacaccCATCATTTTCATGCAACTTCTTAC : 4395053 286 : rSerGlyIleGluIleCysLeuSerGlyTyrAlaValLeuAspSerAspSerAlaA : 304 ||||||||||||||||||||||||||||!:!||||||:!!||| :!!.!!.!!. rSerGlyIleGluIleCysLeuSerGlyPheAlaValIleAsp---AsnGlyThrG 4395054 : GAGCGGAATAGAGATTTGTTTGAGTGGATTCGCGGTGATCGAT---AACGGCACCG : 4395107 305 : snAlaAspLeuLeuLysPheIleSerTyrPheIleSerMetGlyIleGlnLeuLeu : 322 .!.!!|||||||||||||||:!:||||||!!.! !|||||||||:!:||||||||| lyThrAspLeuLeuLysPheValSerTyrLeuThrSerMetGlyValGlnLeuLeu 4395108 : GTACCGATCTTCTCAAATTTGTGTCTTATTTAACCTCGATGGGGGTGCAACTTTTG : 4395161 323 : LeuTrpCysTrpProGlyGluIleLeuIleGlnGluSerGlnGluIleGlyHisVa : 341 |||||||||||||||||||||||||||:!!||||||||| !|||||||||||||| LeuTrpCysTrpProGlyGluIleLeuValGlnGluSerLeuGluIleGlyHisVa 4395162 : CTATGGTGTTGGCCTGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGTCATGT : 4395218 342 : lIleTyrLeuAsnIleProTrpTyrAsnLeuProProIleTyrGlnLysTyrPheC : 360 |:!!||||||||||||||||||||||||||||||||||||||||||||| ! .!!| lValTyrLeuAsnIleProTrpTyrAsnLeuProProIleTyrGlnLysGlnLeuC 4395219 : AGTCTATCTAAATATACCATGGTACAATTTACCACCGATTTATCAGAAACAACTTT : 4395275 361 : ysLeuMetIleValArgThrGlnGlnTyrCysArgIleThrAlaLeuThrPheGln : 378 |||||||||||:!!|||.!!||||||||||||!!!||||||||||||||||||||| ysLeuMetIleIleArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPheGln 4395276 : GCCTGATGATCATTAGGGCCCAACAGTATTGCAGCATTACGGCATTAACGTTTCAA : 4395329 379 : ThrLeuSerIleCysThrLeuThrSer >>>> Target Intron 4 >>>> : 388 |||||||||||| !|||||||||:!! 471 bp ThrLeuSerIleHisThrLeuThrAla++ ++ 4395330 : ACGTTGTCTATTCACACGTTAACAGCCgt.........................ag : 4395828 389 : ValPheAsnThrSerIleSerTyrPheThrLeuLeuArgGlnIleGlnGln : 404 ||||||||||||:!! !||||||||||||||||||||||||!!:|||||| ValPheAsnThrAlaAlaSerTyrPheThrLeuLeuArgGlnMetGlnGln 4395829 : GTATTCAATACAGCTGCTTCGTATTTTACTTTGCTGCGACAAATGCAGCAA : 4395880 vulgar: AfOr117 0 404 . KQ414784.1 4393578 4395880 + 1438 M 73 219 S 0 1 5 0 2 I 0 307 3 0 2 S 1 2 M 45 135 G 0 3 M 54 162 5 0 2 I 0 173 3 0 2 M 92 276 S 0 2 5 0 2 I 0 127 3 0 2 S 1 1 M 33 99 G 1 0 M 87 261 5 0 2 I 0 467 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4393579 4395880 1438 + . gene_id 1 ; sequence AfOr117 ; gene_orientation + KQ414784.1 exonerate:protein2genome:local cds 4393579 4393798 . + . KQ414784.1 exonerate:protein2genome:local exon 4393579 4393798 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4393799 4393800 . + . intron_id 1 ; splice_site "GC" KQ414784.1 exonerate:protein2genome:local intron 4393799 4394109 . + . intron_id 1 KQ414784.1 exonerate:protein2genome:local splice3 4394108 4394109 . + . intron_id 0 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394110 4394411 . + . KQ414784.1 exonerate:protein2genome:local exon 4394110 4394411 . + . insertions 3 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4394412 4394413 . + . intron_id 2 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4394412 4394588 . + . intron_id 2 KQ414784.1 exonerate:protein2genome:local splice3 4394587 4394588 . + . intron_id 1 ; splice_site "GG" KQ414784.1 exonerate:protein2genome:local cds 4394589 4394866 . + . KQ414784.1 exonerate:protein2genome:local exon 4394589 4394866 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4394867 4394868 . + . intron_id 3 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4394867 4394997 . + . intron_id 3 KQ414784.1 exonerate:protein2genome:local splice3 4394996 4394997 . + . intron_id 2 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394998 4395358 . + . KQ414784.1 exonerate:protein2genome:local exon 4394998 4395358 . + . insertions 0 ; deletions 1 KQ414784.1 exonerate:protein2genome:local splice5 4395359 4395360 . + . intron_id 4 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4395359 4395829 . + . intron_id 4 KQ414784.1 exonerate:protein2genome:local splice3 4395828 4395829 . + . intron_id 3 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4395830 4395880 . + . KQ414784.1 exonerate:protein2genome:local exon 4395830 4395880 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local similarity 4393579 4395880 1438 + . alignment_id 1 ; Query AfOr117 ; Align 4393579 1 219 ; Align 4394112 75 135 ; Align 4394250 120 162 ; Align 4394589 174 276 ; Align 4394999 267 99 ; Align 4395098 301 261 ; Align 4395830 388 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr121 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 98 -> 256 Target range: 31113 -> 31584 99 : LysLysValLeuSerProIleValAsnMetIleAlaLysAspTrpLeuLysLeuLysThr : 118 ...|||....!!!.!|||:!!:!!!!. .!! ! ! |||||| !! ! !!:!||| AsnLysAlaPheLysProValIleLysSerPheTyrAspAspTrpLysThrSerArgThr 31114 : aacaaagcttTCAAGCCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACc : 31171 119 : AspTyrGluLysAspValMetIleGlnArgAlaArgIleAlaArgIleIleAsnIlePhe : 138 ||||||:::..!|||:!::!!||||||!:!.!!|||!:! !|||::!|||!:: LysGluGluLysGluThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIleTrp 31172 : aaggaggagaaggagacCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGG : 31231 139 : GlyTyrIleLeuMetCysIleLeuIleTrpLeuLeuMetIleLeuProArgPheGlyIle : 158 !!! :!!|||! ! ! !:!!:!! :!!! !:!:! !||| ||| !!||| CysSerValLeuThrLeuThrMetValThrValTyrLeuSerLeu---ArgAlaTrpIle 31232 : TGCTCAGTATTAACCTTGACCATGGTCACTGTTTATCTAAGTCTT---CGAGCGTGGATC : 31288 159 : ThrIleArgTyrValMetAsnGlyThrAspAlaLysLysLeuPheProLeuProThrTyr : 178 ! ! !!:! !! !! ! ..! ! ! ! ! :::|||.!!! !! !||| !||| IleTyrGlnLeuAspArgAlaAsnGlnLysGlnAspArgLeuLeuLeuTyrProGlyTyr 31289 : ATCTACCAGCTTGATAGGGCAAACCAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTAT : 31348 179 : TyrIlePheAspValSerGluThrProTyrPheGluIleThrTyrThrLeuGlnSerIle : 198 !:! !||||||:!! !! !! ! ! .!. ! ||| !! ! !||| !:!! PheProPheAspIleArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeu 31349 : TTTCCCTTCGATATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTC : 31408 199 : SerLeuLeuIleAlaAlaPheCysTyrAlaGlyValAspAsnPhePheGlyIleLeuIle : 218 :!! !! ! !|||!.!.!! !!|||.!! !||||||!..|||.!!!.!!!:|||||| AlaAlaTyrSerAlaValIleSerTyrThrThrValAspThrPheIleAlaMetLeuIle 31409 : GCAGCGTATTCCGCTGTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATA : 31468 219 : LeuHisIleCysGlyGlnLeuThrAsnLeuArgPheGlnLeuAlaAsnMetLysGluSer : 238 :!!|||||||||||||||!!! !! |||||| :!!||| !!..:!!! !!!:..! MetHisIleCysGlyGlnPheGluIleLeuArgGlnLysLeuArgArgLeuMetAspAsp 31469 : ATGCACATATGCGGACAATTTGAGATACTGAGACAGAAATTACGAAGGCTGATGGATGAC : 31528 239 : GluThrSerAsnPheValLeuIleAlaIleValLysAspHisIleArgLeuIle : 256 |||! !!.!!.! !:!! !! !||| !|||!!:! :!! !:!!||| GluLysLysThrArgSerValAspGluIleGlnLysGluLeuValLeuIleIle 31529 : GAGAAGAAGACCAGAAGCGTGGATGAGATTCAGAAGGAGCTGGTTTTGATCATA : 31584 vulgar: AfOr121 98 256 . KQ414804.1 31113 31584 + 157 M 55 165 G 1 0 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31114 31584 157 + . gene_id 1 ; sequence AfOr121 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31114 31584 . + . KQ414804.1 exonerate:protein2genome:local exon 31114 31584 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 31114 31584 157 + . alignment_id 1 ; Query AfOr121 ; Align 31114 99 165 ; Align 31279 155 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr121 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 174 -> 235 Target range: 36770 -> 36953 175 : LeuProThrTyrTyrIlePheAspValSerGluThrProTyrPheGluIleThrTyrThr : 194 :!!|||.!! !:! !!:!|||..!!:!:!!!:!||| !!!:!|||||||||!:: ! IleProAlaThrPheProTyrAspThrAsnLysSerProAsnTyrGluIleThrTrpLeu 36771 : ATCCCGGCCACATTTCCATACGACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTT : 36828 195 : LeuGlnSerIleSerLeuLeuIleAlaAlaPheCysTyrAlaGlyValAspAsnPhePhe : 214 !|||! !:!:.!! !:!!:!:::!|||.!.||||||:!! !! !!|||!..||| !! GlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSerCysPheAspThrPheVal 36829 : GGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTC : 36888 215 : GlyIleLeuIleLeuHisIleCysGlyGlnLeuThrAsnLeuArgPheGlnLeuAlaAsn : 234 !.!:!!|||:!:|||||||||||||||||||||||| !||||||.!! |||! !||| AlaValLeuValLeuHisIleCysGlyGlnLeuThrValLeuArgIleAlaLeuGluAsn 36889 : GCTGTTCTCGTGTTACACATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTCGAGAAT : 36948 235 : Met : 235 :!: Leu 36949 : CTT : 36953 vulgar: AfOr121 174 235 . KQ414804.1 36770 36953 + 146 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36771 36953 146 + . gene_id 2 ; sequence AfOr121 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36771 36953 . + . KQ414804.1 exonerate:protein2genome:local exon 36771 36953 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36771 36953 146 + . alignment_id 2 ; Query AfOr121 ; Align 36771 175 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr121 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 176 -> 236 Target range: 44886 -> 45066 177 : ThrTyrTyrIlePheAspValSerGluThrProTyrPheGluIleThrTyrThrLeuGln : 196 .!!|||!:! !!:!||| !..!! !:!||| !!!:!|||.!!||| ! ! !||| AlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThrValIleAlaGln 44887 : GCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACAGTGATTGCTCAA : 44944 197 : SerIleSerLeuLeuIleAlaAlaPheCysTyrAlaGlyValAspAsnPhePheGlyIle : 216 ! !|||:!! !!!! !|||||| ! |||.!!!.!||||||!.!|||.!!! !!!: IleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThrPheIleValMet 44945 : ATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACTTTCATTGTAATG : 45004 217 : LeuIleLeuHisIleCysGlyGlnLeuThrAsnLeuArgPheGlnLeuAlaAsnMetLys : 236 ||||||||||||:!!||||||||||||:!!||||||||| !:!!!!!!.!!!.:!::!! LeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArgAsnGluPheGlyLysLeuGln 45005 : TTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGAAACGAATTCGGTAAGCTTCAA : 45064 vulgar: AfOr121 176 236 . KQ414804.1 44886 45066 + 125 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44887 45066 125 + . gene_id 3 ; sequence AfOr121 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44887 45066 . + . KQ414804.1 exonerate:protein2genome:local exon 44887 45066 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44887 45066 125 + . alignment_id 3 ; Query AfOr121 ; Align 44887 177 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr121 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 327 -> 390 Target range: 34375 -> 34564 328 : ValThrGlnSerGluGluIleHisAsnAlaAlaTyrGluCysGluTrpValSerLeuLys : 347 :!! !||||||..!|||!!: !|||:!!|||||||||! .!.||| !!:!:!!..! IlePheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSer 34376 : ATATTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCA : 34433 348 : TyrThrLysAlaLysSerLeuIleIleIleMetAlaArgSerLysLysProLeuTyrLeu : 367 ! !!:!!||||||!!!|||:!!.!!|||||| !|||!!! :::||||||! !||| ProProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeu 34434 : CCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTG : 34493 368 : ThrAlaGlyLysLeuPheProValThrMetLeuThrPheCysAsnIleLeuLysIleSer : 387 ||||||||||||!!! ! !! !!:!!||| !! !||| !!!.!:!! ! |||::: ThrAlaGlyLysPheSerThrPheSerMetGluMetPheSerThrValSerProIleAsn 34494 : ACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTGTAAGCccgataaat : 34553 388 : LeuSerTyr : 390 ::: ::: IleHisPhe 34554 : attcatttt : 34564 vulgar: AfOr121 327 390 . KQ414804.1 34375 34564 + 119 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34376 34564 119 + . gene_id 4 ; sequence AfOr121 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 34376 34564 . + . KQ414804.1 exonerate:protein2genome:local exon 34376 34564 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34376 34564 119 + . alignment_id 4 ; Query AfOr121 ; Align 34376 328 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr116P Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 170 -> 248 Target range: 36764 -> 36998 171 : LeuProLeuAlaGlyTrpTyrProTyrAsnValThrSerThrProIlePheGluIleThr : 190 |||! !:!! !!!.! !:!||||||:!!..!!.!!.!!:!|||! !!:!||||||||| LeuLeuIleProAlaThrPheProTyrAspThrAsnLysSerProAsnTyrGluIleThr 36765 : CTACTTATCCCGGCCACATTTCCATACGACACGAATAAAAGTCCTAATTACGAAATTACT : 36822 191 : TrpLeuHisGlnValLeuValIleLeuIleAsnCysIleAsnAsnIleAlaIleAspThr : 210 |||||| ||| !!:!!! !! !:!!:!:!:!...||| ! !! !..!.!!|||||| TrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSerCysPheAspThr 36823 : TGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGATACG : 36882 211 : LeuIleThrGlyPheIleIleIleThrCysCysGlnLeuThrIleLeuLysLysCysIle : 230 !!!:!!.!!! !.!!:!::!! !! !||| !!|||||||||:!!|||:::! ..!:!! PheValAlaValLeuValLeuHisIleCysGlyGlnLeuThrValLeuArgIleAlaLeu 36883 : TTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTC : 36942 231 : AlaArgAsnAsnAsnValAsnIleGluLysSerLeuSerLysIleTyrAsnLys : 248 ! !!.! ! !|||..!!..|||:!! ! !:!! !||||||.!! ! .!.::! GluAsnLeuAlaAsnThrThrIleLysAspAsnTyrSerLysPheGlnGluArg 36943 : GAGAATCTTGCTAACACGACAATAAAAGACAACTACAGCAAGTTCCAAGAACGA : 36998 vulgar: AfOr116P 170 248 . KQ414804.1 36764 36998 + 109 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36765 36998 109 + . gene_id 1 ; sequence AfOr116P ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36765 36998 . + . KQ414804.1 exonerate:protein2genome:local exon 36765 36998 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36765 36998 109 + . alignment_id 1 ; Query AfOr116P ; Align 36765 171 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr131like_3 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 0 -> 88 Target range: 443381 -> 444040 1 : MetAspValPheAspLysHisTyrHisThrTyrArgThrValLeuLysIleValGlyL : 20 ||||||||||||:!!|||!!.|||...||||||||| !:!!|||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 443382 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGTTAGGAC : 443439 21 : euTrpProTyrAsnAsnSerValTyrValTrpIleGlnArgLeuLeuLeuLeuThrLe : 39 |||||||||||::!.!.|||:!!||| ! |||!!.|||:!!! !!!! !|||:! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 443440 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 443496 40 : uTyrLeuGlyAsnValIlePheGln >>>> Target Intron 1 >>>> IleV : 49 ! |||..! !:!!||||||:!! 395 bp |||! eIleLeuSerCysIleIlePheGlu++ ++IleA 443497 : TATACTTTCGTGTATTATATTTGAGgt.........................agATAG : 443921 50 : alSerLeuLeuArgSerGluIleThrLeuArgAsnCysIleLeuIleLeuSerThrTh : 68 .!!!!|||:!! !! !|||! !.!!! ...||| ::: !! !! !..! laThrLeuValSerPheGluArgAlaSerGluAsnIleLeuGlnThrCysPheValCy 443922 : CGACACTCGTTTCTTTTGAAAGAGCATCggaaaatattcttcagaCTTGTTTCGTATG : 443978 69 : rCysProPheIleIleValLeuLeuArgTyrValSerPheIleIlePhePheProMet : 87 ! ! !.!!:!::!! !!!!! !|||||||||||||||||| ! !||||||.!. sProLeuLeuValLeuPhePheGluArgTyrValSerPheIleCysAsnPheProPhe 443979 : TCCTTTGCTCGTGTTATTCTTCGAGCGATACGTTTCATTCATCTGTAACTTTCCATTT : 444035 88 : Leu : 88 :!! Val 444036 : GTA : 444040 vulgar: AfOr131like_3 0 88 . KQ414815.1 443381 444040 + 154 M 47 141 5 0 2 I 0 391 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 443382 444040 154 + . gene_id 1 ; sequence AfOr131like_3 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 443382 443522 . + . KQ414815.1 exonerate:protein2genome:local exon 443382 443522 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 443523 443524 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 443523 443917 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 443916 443917 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 443918 444040 . + . KQ414815.1 exonerate:protein2genome:local exon 443918 444040 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 443382 444040 154 + . alignment_id 1 ; Query AfOr131like_3 ; Align 443382 1 141 ; Align 443918 48 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr131like_3 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 0 -> 85 Target range: 439271 -> 439921 1 : MetAspValPheAspLysHisTyrHisThrTyrArgThrValLeuLysIleValGlyL : 20 ||||||||||||:!!|||!!.|||...||||||||| !:!!|||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 439272 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGCTAGGAC : 439329 21 : euTrpProTyrAsnAsnSerValTyrValTrpIleGlnArgLeuLeuLeuLeuThrLe : 39 |||||||||||::!.!.|||:!!||| ! |||!!.|||:!!! !!!! !|||:! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 439330 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 439386 40 : uTyrLeuGlyAsnValIlePheGln >>>> Target Intron 1 >>>> IleV : 49 ! |||..! !:!!||||||:!! 395 bp |||! eMetLeuSerCysIleIlePheGlu++ ++IleA 439387 : TATGCTTTCGTGTATTATATTTGAGgt.........................agATAG : 439811 50 : alSerLeuLeuArgSerGluIleThrLeuArgAsnCysIleLeuIleLeuSerThrTh : 68 .!!!!|||:!! !! !|||! !.!!! ...||| ::: !! !! !..! laThrLeuValSerPheGluArgAlaSerGluAsnIleLeuGlnThrCysPheValCy 439812 : CGACACTCGTTTCTTTTGAAAGAGCATCggaaaatattcttcagaCTTGTTTCGTATG : 439868 69 : rCysProPheIleIleValLeuLeuArgTyrValSerPheIleIlePhePhe : 85 ! ! !.!!:!::!! !!!!! !|||||||||||||||||| ! !||| sProLeuLeuValLeuPhePheGluArgTyrValSerPheIleCysAsnPhe 439869 : TCCTTTGCTCGTGTTATTCTTCGAGCGATACGTTTCATTCATCTGTAACTTT : 439921 vulgar: AfOr131like_3 0 85 . KQ414815.1 439271 439921 + 146 M 47 141 5 0 2 I 0 391 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439272 439921 146 + . gene_id 2 ; sequence AfOr131like_3 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 439272 439412 . + . KQ414815.1 exonerate:protein2genome:local exon 439272 439412 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 439413 439414 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 439413 439807 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 439806 439807 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 439808 439921 . + . KQ414815.1 exonerate:protein2genome:local exon 439808 439921 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 439272 439921 146 + . alignment_id 2 ; Query AfOr131like_3 ; Align 439272 1 141 ; Align 439808 48 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr131like_3 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 139 -> 215 Target range: 440483 -> 440711 140 : LeuLeuTyrLeuIleThrSerAspPheIleMetProLeuAsnGluPheHisThrArgV : 159 |||||||||! !:!!:!!! !|||.!.:!!:!:|||||||||:!!! !... !!||| LeuLeuTyrProValSerMetAspLeuLeuValProLeuAsnLysSerArgProArgT 440484 : TTATTATACCCAGTATCAATGGATCTGTTAGTACCATTGAACAAATCCAGACCTCGTT : 440541 160 : alLeuHisTyrPheThrLeuPheSerValAsnArgThrValTyrPheTyrIleLeuCy : 178 !||| |||||| :::... !|||!:!! ! !|||.!! !!.!!:!! yrLeuGlyTyrPhePheIleLeuProSerAsnGlnIleGlnTyrIleAspPheMetTh 440542 : ATCTTGGctacttttttattcttccctCTAATCAAATACAGTATATTGATTTTATGAC : 440598 179 : sLeuAspPheLeuPheValValThrPheGlyLeuLeuSerIleIleCysThrGluSer : 197 !!! !! !!!.||| ! ! ! |||||||||!!!:!!! !|||||||||||| rPheTyrGlyThrLeuValProPheValGlyLeuLeuThrValThrCysThrGluSer 440599 : ATTTTATGGGACATTAGTTCCCTTTGTGGGATTATTAACTGTAACATGCACGGAATCG : 440655 198 : IleIleGlyLeuCysSerTyrHisValGlyIleLeuPheLysIleIleSerHis : 215 :!!:!!.!!:!! !:!! :!!|||.!!! !|||!:!||||||! !.!!:!! LeuLeuSerIleIleAlaMetTyrValSerSerLeuTyrLysIleThrGlyTyr 440656 : CTTCTTAGTATTATCGCAATGTATGTGAGCAGTTTATATAAGATTACTGGGTAC : 440711 vulgar: AfOr131like_3 139 215 . KQ414815.1 440483 440711 + 122 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 440484 440711 122 + . gene_id 3 ; sequence AfOr131like_3 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 440484 440711 . + . KQ414815.1 exonerate:protein2genome:local exon 440484 440711 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 440484 440711 122 + . alignment_id 3 ; Query AfOr131like_3 ; Align 440484 140 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr131like_3 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 279 -> 331 Target range: 441440 -> 441596 280 : AsnLeuHisArgLeuValSerAlaIleIleAlaAsnLysAspGlnLeuGluIleLeuI : 299 ::!:!! !:!:!!|||!.!||||||:!:.!!! !!.||||||||||||||||||: HisValSerGlnIleValLysAlaIleValThrMetAsnAspGlnLeuGluIleLeuL 441441 : caTGTTTCACAGATAGTAAAAGCAATAGTGACAATGAATGATCAATTGGAGATACTGT : 441498 300 : leSerLeuIlePhePheThrAsnGlnLeuValValValPheLeuAsnAsnHisAsnSe : 318 !!|||:!!!!:.!! !!!:!|||!!.:!!||| !!:!!|||!!!||||||:!! .! euSerIleMetIleValSerAsnHisIleValPheLeuPhePheAsnAsnTyrAlaGl 441499 : TAAGTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGG : 441555 319 : rGlnIlePheIleAsnAsnAsnGluGluPhePheHisGlu : 331 !|||:!!.!.||||||:!!!:!|||||| !!||| !||| yGlnLeuLeuIleAsnHisSerGluGluValPheValGlu 441556 : ACAGTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA : 441596 vulgar: AfOr131like_3 279 331 . KQ414815.1 441440 441596 + 120 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441441 441596 120 + . gene_id 4 ; sequence AfOr131like_3 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441441 441596 . + . KQ414815.1 exonerate:protein2genome:local exon 441441 441596 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441441 441596 120 + . alignment_id 4 ; Query AfOr131like_3 ; Align 441441 280 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr131like_3 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 279 -> 331 Target range: 445552 -> 445708 280 : AsnLeuHisArgLeuValSerAlaIleIleAlaAsnLysAspGlnLeuGluIleLeuI : 299 ::!:!! !:!:!!|||!.!||||||:!:.!!! !!.||||||||||||||||||: HisValSerGlnIleValLysAlaIleValThrMetAsnAspGlnLeuGluIleLeuL 445553 : caTGTTTCACAGATAGTAAAAGCAATAGTGACAATGAATGATCAATTGGAGATACTGT : 445610 300 : leSerLeuIlePhePheThrAsnGlnLeuValValValPheLeuAsnAsnHisAsnSe : 318 !!|||:!!!!:.!! !!!:!|||!!.:!!||| !!:!!|||!!!||||||:!! .! euSerIleMetIleValSerAsnHisIleValPheLeuPhePheAsnAsnTyrAlaGl 445611 : TAAGTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGG : 445667 319 : rGlnIlePheIleAsnAsnAsnGluGluPhePheHisGlu : 331 !|||:!!.!.||||||:!!!:!|||||| !!||| !||| yGlnLeuLeuIleAsnHisSerGluGluValPheValGlu 445668 : ACAGTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA : 445708 vulgar: AfOr131like_3 279 331 . KQ414815.1 445552 445708 + 120 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445553 445708 120 + . gene_id 5 ; sequence AfOr131like_3 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445553 445708 . + . KQ414815.1 exonerate:protein2genome:local exon 445553 445708 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445553 445708 120 + . alignment_id 5 ; Query AfOr131like_3 ; Align 445553 280 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr131like_3 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 139 -> 221 Target range: 444595 -> 444841 140 : LeuLeuTyrLeuIleThrSerAspPheIleMetProLeuAsnGluPheHisThrArgV : 159 |||||||||! !:!!:!!! !|||.!.:!!:!:|||||||||.!.! !... !!||| LeuLeuTyrProValSerMetAspLeuLeuValProLeuAsnAsnSerArgProArgT 444596 : TTATTATACCCAGTATCAATGGATCTGTTAGTACCTTTGAACAATTCCAGACCTCGTT : 444653 160 : alLeuHisTyrPheThrLeuPheSerValAsnArgThrValTyrPheTyrIleLeuCy : 178 !||| !||||||..!:!!.!! !! !|||!:!! ! !|||.!! !!.!!:!! yrLeuGlyTyrPheValIleLeuProSerAsnGlnIleGlnTyrIleAspPheMetTh 444654 : ATCTTGGCTACTTTGTTATTCTTCCCTCTAATCAAATACAGTATATTGATTTTATGAC : 444710 179 : sLeuAspPheLeuPheValValThrPheGlyLeuLeuSerIleIleCysThrGluSer : 197 !!! !! !!!.||| ! ! ! |||||||||!!!:!! !|||||||||||| rPheTyrGlyThrLeuValProPheValGlyLeuLeuThrValAlaCysThrGluSer 444711 : ATTTTATGGGACATTAGTTCCCTTTGTGGGATTATTAACTGTAGCATGCACGGAATCG : 444767 198 : IleIleGlyLeuCysSerTyrHisValGlyIleLeuPheLysIleIleSerHisArgI : 217 :!!:!!.!!:!! !!:!! :!!:!! !!! !|||!:!||||||! !.!!:!! ! LeuLeuSerIleSerAlaMetTyrLeuCysSerLeuTyrLysIleThrGlyTyrValS 444768 : CTTCTTAGTATTAGCGCAATGTATCTGTGCAGTTTATATAAGATTACTGGGTACGTAT : 444827 218 : leGlnLysIleIle : 221 !||| ! !||| erGlnTyrTyrIle 444828 : CTCAATACTATatc : 444841 vulgar: AfOr131like_3 139 221 . KQ414815.1 444595 444841 + 118 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 444596 444841 118 + . gene_id 6 ; sequence AfOr131like_3 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 444596 444841 . + . KQ414815.1 exonerate:protein2genome:local exon 444596 444841 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 444596 444841 118 + . alignment_id 6 ; Query AfOr131like_3 ; Align 444596 140 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr130_2 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 189 Query range: 128 -> 215 Target range: 444562 -> 444823 129 : SerTyrAlaThrIleAlaPheTyrSerLeuTyrLeuLeuTyrProValThrLeuAspL : 148 :!!||| ! !|||.!!.!! ! ! ! |||||||||||||||:!!:!!|||| AlaTyrPheGlyIleThrIleIleValThrThrLeuLeuTyrProValSerMetAspL 444563 : GCTTACTTTGGGATCACAATTATCGTGACGACATTATTATACCCAGTATCAATGGATC : 444620 149 : euIleIleProLeuAsnGluSerArgIleArgLeuIleTyrTyrPheThrThrPheSe : 167 ||:!!:!!|||||||||.!.|||||| !|||! !:!! !||||||..!! !.!! ! euLeuValProLeuAsnAsnSerArgProArgTyrLeuGlyTyrPheValIleLeuPr 444621 : TGTTAGTACCTTTGAACAATTCCAGACCTCGTTATCTTGGCTACTTTGTTATTCTTCC : 444677 168 : rHisAspArgIleMetTyrLeuAspIleLeuCysPheAsnIleThrPheLeuIleIle : 186 ! !:!!!:!|||..!|||:!!|||.!!:!! ||| !! |||!!.:!! !.!! oSerAsnGlnIleGlnTyrIleAspPheMetThrPheTyrGlyThrLeuValProPhe 444678 : CTCTAATCAAATACAGTATATTGATTTTATGACATTTTATGGGACATTAGTTCCCTTT : 444734 187 : LeuGlyValLeuSerIleAlaCysThrGluThrLeuIleGlyValCysSerTyrTyrI : 206 :!!|||:!!|||!!!:!!||||||||||||:!!|||:!!.!!:!! !!:!! |||: ValGlyLeuLeuThrValAlaCysThrGluSerLeuLeuSerIleSerAlaMetTyrL 444735 : GTGGGATTATTAACTGTAGCATGCACGGAATCGCTTCTTAGTATTAGCGCAATGTATC : 444794 207 : leCysIleLeuLeuLysIleIleSerTyr : 215 !:|||! !|||! !||||||! !.!!||| euCysSerLeuTyrLysIleThrGlyTyr 444795 : TGTGCAGTTTATATAAGATTACTGGGTAC : 444823 vulgar: AfOr130_2 128 215 . KQ414815.1 444562 444823 + 189 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 444563 444823 189 + . gene_id 1 ; sequence AfOr130_2 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 444563 444823 . + . KQ414815.1 exonerate:protein2genome:local exon 444563 444823 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 444563 444823 189 + . alignment_id 1 ; Query AfOr130_2 ; Align 444563 129 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr130_2 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 187 Query range: 332 -> 390 Target range: 445817 -> 446064 333 : TyrValSerLeuTrpTyrSerIleProLeuLysAlaGlnLysIleLeuLeuLeuIleM : 352 ||| !||| !||||||!!!:!!||||||!..|||||||||:!:||||||!!!|||| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 353 : etLeuArgSerSerThrValCysAlaPheAsnLeuPheGlyLeuPheThrProCysTy : 371 ||:!!!:!|||!!!! ! !||| !.!!||||||! !|||:!!|||.!!|||||||| etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 372 : rThrGlyPheSerThr >>>> Target Intron 1 >>>> MetLeuSerSerS : 381 |! !|||||||||:!! 73 bp |||:!!|||!!!| rLysGlyPheSerSer++ ++MetIleSerThrS 445933 : CAAAGGTTTTTCCTCGgt.........................agATGATAAGCACTT : 446035 382 : erPheSerTyrPheThrLeuIleTyrSer : 390 ||||||||||| !!||| !||||||||| erPheSerTyrValThrAlaIleTyrSer 446036 : CTTTCTCGTATGTCACAGCGATATATTCG : 446064 vulgar: AfOr130_2 332 390 . KQ414815.1 445817 446064 + 187 M 44 132 5 0 2 I 0 69 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 446064 187 + . gene_id 2 ; sequence AfOr130_2 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 445818 445949 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445949 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445950 445951 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445950 446022 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 446021 446022 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 446023 446064 . + . KQ414815.1 exonerate:protein2genome:local exon 446023 446064 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 446064 187 + . alignment_id 2 ; Query AfOr130_2 ; Align 445818 333 132 ; Align 446023 377 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr130_2 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 182 Query range: 332 -> 390 Target range: 441705 -> 441952 333 : TyrValSerLeuTrpTyrSerIleProLeuLysAlaGlnLysIleLeuLeuLeuIleM : 352 ||| !||| !||||||!!!:!!||||||!..|||||||||:!:||||||!!!|||| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 353 : etLeuArgSerSerThrValCysAlaPheAsnLeuPheGlyLeuPheThrProCysTy : 371 ||:!!!:!|||!!!! ! !||| !.!.||||||! !|||:!!|||.!!|||||||| etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 372 : rThrGlyPheSerThr >>>> Target Intron 1 >>>> MetLeuSerSerS : 381 |! !|||||||||:!! 73 bp |||:!!|||!!!| rLysGlyPheSerSer++ ++MetIleSerThrS 441821 : CAAAGGTTTTTCCTCGgt.........................agATGATAAGCACTT : 441923 382 : erPheSerTyrPheThrLeuIleTyrSer : 390 ||||||||||| !!.!! !||||||||| erPheSerTyrValAlaAlaIleTyrSer 441924 : CCTTCTCGTATGTCGCAGCGATATATTCG : 441952 vulgar: AfOr130_2 332 390 . KQ414815.1 441705 441952 + 182 M 44 132 5 0 2 I 0 69 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441952 182 + . gene_id 3 ; sequence AfOr130_2 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 441706 441837 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441837 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 441838 441839 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 441838 441910 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 441909 441910 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 441911 441952 . + . KQ414815.1 exonerate:protein2genome:local exon 441911 441952 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441952 182 + . alignment_id 3 ; Query AfOr130_2 ; Align 441706 333 132 ; Align 441911 377 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr130_2 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 128 -> 215 Target range: 440450 -> 440711 129 : SerTyrAlaThrIleAlaPheTyrSerLeuTyrLeuLeuTyrProValThrLeuAspL : 148 :!!||| ! !|||.!!.!! ! ! ! |||||||||||||||:!!:!!|||| AlaTyrPheGlyIleThrIleThrValThrThrLeuLeuTyrProValSerMetAspL 440451 : GCTTACTTTGGGATCACAATTACCGTGACGACATTATTATACCCAGTATCAATGGATC : 440508 149 : euIleIleProLeuAsnGluSerArgIleArgLeuIleTyrTyrPheThrThrPheSe : 167 ||:!!:!!|||||||||:!!|||||| !|||! !:!! |||||| ... euLeuValProLeuAsnLysSerArgProArgTyrLeuGlyTyrPhePheIleLeuPr 440509 : TGTTAGTACCATTGAACAAATCCAGACCTCGTTATCTTGGctacttttttattcttcc : 440565 168 : rHisAspArgIleMetTyrLeuAspIleLeuCysPheAsnIleThrPheLeuIleIle : 186 !:!!!:!|||..!|||:!!|||.!!:!! ||| !! |||!!.:!! !.!! oSerAsnGlnIleGlnTyrIleAspPheMetThrPheTyrGlyThrLeuValProPhe 440566 : ctCTAATCAAATACAGTATATTGATTTTATGACATTTTATGGGACATTAGTTCCCTTT : 440622 187 : LeuGlyValLeuSerIleAlaCysThrGluThrLeuIleGlyValCysSerTyrTyrI : 206 :!!|||:!!|||!!!:!!.!!|||||||||:!!|||:!!.!!:!! !:!! |||: ValGlyLeuLeuThrValThrCysThrGluSerLeuLeuSerIleIleAlaMetTyrV 440623 : GTGGGATTATTAACTGTAACATGCACGGAATCGCTTCTTAGTATTATCGCAATGTATG : 440682 207 : leCysIleLeuLeuLysIleIleSerTyr : 215 !: !!! !|||! !||||||! !.!!||| alSerSerLeuTyrLysIleThrGlyTyr 440683 : TGAGCAGTTTATATAAGATTACTGGGTAC : 440711 vulgar: AfOr130_2 128 215 . KQ414815.1 440450 440711 + 174 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 440451 440711 174 + . gene_id 4 ; sequence AfOr130_2 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 440451 440711 . + . KQ414815.1 exonerate:protein2genome:local exon 440451 440711 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 440451 440711 174 + . alignment_id 4 ; Query AfOr130_2 ; Align 440451 129 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr130_2 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 173 Query range: 0 -> 88 Target range: 443381 -> 444040 1 : MetAspValPheAspLysGlnTyrArgThrTyrArgIleLeuLeuLysIleValGlyL : 20 ||||||||||||:!!|||||||||||||||||||||:!!:!!|||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 443382 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGTTAGGAC : 443439 21 : euTrpProTyrAspAsnSerIleCysIleTrpIleGlnArgLeuCysLeuLeuThrTy : 39 |||||||||||..!.!.||||||! !! ! |||!!.|||:!!! !!! !||| euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 443440 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 443496 40 : rPheLeuGlySerIleIlePheGln >>>> Target Intron 1 >>>> ValL : 49 !.!.|||..!!!!|||||||||:!! 395 bp :!! eIleLeuSerCysIleIlePheGlu++ ++IleA 443497 : TATACTTTCGTGTATTATATTTGAGgt.........................agATAG : 443921 50 : euSerLeuLeuLysSerLysIleThrLeuGlnAsnPheIleLeuThrSerSerMetTh : 68 !!!!|||:!!...! !:!!! !.!!! :::|||...::: |||!!!! !:!: laThrLeuValSerPheGluArgAlaSerGluAsnIleLeuGlnThrCysPheValCy 443922 : CGACACTCGTTTCTTTTGAAAGAGCATCggaaaatattcttcagaCTTGTTTCGTATG : 443978 69 : rCysProPheValLeuPheLeuLeuArgTyrValSerPheMetIleLeuPheProThr : 87 ! ! !.!!|||||||||!!! !|||||||||||||||!!: ! !|||||| ! sProLeuLeuValLeuPhePheGluArgTyrValSerPheIleCysAsnPheProPhe 443979 : TCCTTTGCTCGTGTTATTCTTCGAGCGATACGTTTCATTCATCTGTAACTTTCCATTT : 444035 88 : Ile : 88 :!! Val 444036 : GTA : 444040 vulgar: AfOr130_2 0 88 . KQ414815.1 443381 444040 + 173 M 47 141 5 0 2 I 0 391 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 443382 444040 173 + . gene_id 5 ; sequence AfOr130_2 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 443382 443522 . + . KQ414815.1 exonerate:protein2genome:local exon 443382 443522 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 443523 443524 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 443523 443917 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 443916 443917 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 443918 444040 . + . KQ414815.1 exonerate:protein2genome:local exon 443918 444040 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 443382 444040 173 + . alignment_id 5 ; Query AfOr130_2 ; Align 443382 1 141 ; Align 443918 48 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr130_2 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 169 Query range: 0 -> 100 Target range: 439271 -> 439966 1 : MetAspValPheAspLysGlnTyrArgThrTyrArgIleLeuLeuLysIleValGlyL : 20 ||||||||||||:!!|||||||||||||||||||||:!!:!!|||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 439272 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGCTAGGAC : 439329 21 : euTrpProTyrAspAsnSerIleCysIleTrpIleGlnArgLeuCysLeuLeuThrTy : 39 |||||||||||..!.!.||||||! !! ! |||!!.|||:!!! !!! !||| euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 439330 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 439386 40 : rPheLeuGlySerIleIlePheGln >>>> Target Intron 1 >>>> ValL : 49 !.!.|||..!!!!|||||||||:!! 395 bp :!! eMetLeuSerCysIleIlePheGlu++ ++IleA 439387 : TATGCTTTCGTGTATTATATTTGAGgt.........................agATAG : 439811 50 : euSerLeuLeuLysSerLysIleThrLeuGlnAsnPheIleLeuThrSerSerMetTh : 68 !!!!|||:!!...! !:!!! !.!!! :::|||...::: |||!!!! !:!: laThrLeuValSerPheGluArgAlaSerGluAsnIleLeuGlnThrCysPheValCy 439812 : CGACACTCGTTTCTTTTGAAAGAGCATCggaaaatattcttcagaCTTGTTTCGTATG : 439868 69 : rCysProPheValLeuPheLeuLeuArgTyrValSerPheMetIleLeuPheProThr : 87 ! ! !.!!|||||||||!!! !|||||||||||||||!!: ! !|||! ! ! sProLeuLeuValLeuPhePheGluArgTyrValSerPheIleCysAsnPheGlnPhe 439869 : TCCTTTGCTCGTGTTATTCTTCGAGCGATACGTTTCATTCATCTGTAACTTTCAATTT : 439925 88 : IleLysIleValPheAsnTyrIleArgValGluGluCys : 100 :!!!..! !..! ! ! :!! !|||...:!!||| ValSerAsnThrGly***LeuValTyrValSerLysCys 439926 : GTAAGTAACACTGGATAATTAGTATATGTATCTAAATGT : 439966 vulgar: AfOr130_2 0 100 . KQ414815.1 439271 439966 + 169 M 47 141 5 0 2 I 0 391 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439272 439966 169 + . gene_id 6 ; sequence AfOr130_2 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 439272 439412 . + . KQ414815.1 exonerate:protein2genome:local exon 439272 439412 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 439413 439414 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 439413 439807 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 439806 439807 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 439808 439966 . + . KQ414815.1 exonerate:protein2genome:local exon 439808 439966 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 439272 439966 169 + . alignment_id 6 ; Query AfOr130_2 ; Align 439272 1 141 ; Align 439808 48 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr130_2 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 332 -> 377 Target range: 483211 -> 483346 333 : TyrValSerLeuTrpTyrSerIleProLeuLysAlaGlnLysIleLeuLeuLeuIleM : 352 ||| !!:! !||||||..!! !!:!! !||||||:!!||||||:!!|||| TyrSerAsnAsnTrpTyrGluThrSerIleProLeuGlnLysLeuLeuLeuIleIleM 483212 : TACAGCAATAATTGGTACGAAACGTCCATACCCCTGCAGAAATTACTGTTGATCATCA : 483269 353 : etLeuArgSerSerThrValCysAlaPheAsnLeuPheGlyLeuPheThrProCysTy : 371 ||:!!||||||! ! ! !|||::!!:!:!!!!!||||||!!!!:!||| !!! etMetArgSerIleAspSerCysSerTyrAspPhePheGlyPheTyrThrAlaSerIl 483270 : TGATGAGGAGCATCGATAGTTGCAGTTATGATTTCTTCGGTTTCTACACCGCTTCGAT : 483326 372 : rThrGlyPheSerThrMet : 377 ! !||||||||||||:!: eGlnGlyPheSerThrVal 483327 : CCAAGGTTTCTCAACGGTA : 483346 vulgar: AfOr130_2 332 377 . KQ414815.1 483211 483346 + 108 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 483212 483346 108 + . gene_id 7 ; sequence AfOr130_2 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 483212 483346 . + . KQ414815.1 exonerate:protein2genome:local exon 483212 483346 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 483212 483346 108 + . alignment_id 7 ; Query AfOr130_2 ; Align 483212 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr122/130like_1 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 252 Query range: 263 -> 362 Target range: 445552 -> 445955 264 : AsnLeuGlnArgLeuPheLysAlaIleLysSerMetAspAspProLeuGluThrPheT : 283 ::!:!!..!!:!:!! ! ||||||||| !!!!|||:!!|||! !||||||! !.!. HisValSerGlnIleValLysAlaIleValThrMetAsnAspGlnLeuGluIleLeuL 445553 : caTGTTTCACAGATAGTAAAAGCAATAGTGACAATGAATGATCAATTGGAGATACTGT : 445610 284 : hrCysIleIleLeuValLeuTyrHisLeuValPheIlePheIleAsnAsnTyrAsnGl : 302 ! !!|||!!::!!||| ! !!|||:!!||||||:!:|||.!!||||||||| || euSerIleMetIleValSerAsnHisIleValPheLeuPhePheAsnAsnTyrAlaGl 445611 : TAAGTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGG : 445667 303 : yGlnLeuValIleAspSerSerLeuAsnMetPheAsnGlu{Il} >>>> Target : 316 |||||||:!!|||:!! !||| !.!.:!:||| !|||{ } 10 yGlnLeuLeuIleAsnHisSerGluGluValPheValGlu{Se}++ 445668 : ACAGTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA{TC}gt............ : 445713 317 : Intron 1 >>>> {e}TyrIleSerThrTrpTyrSerIleProLeuLysAlaGlnL : 330 6 bp {!}|||! !||||||||||||!!!:!!||||||!..||||||| ++{r}TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnL 445714 : .............ag{A}TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAA : 445857 331 : ysLeuLeuLeuPheIleMetLeuArgSerSerIleGluCysAlaPheArgLeuSerAs : 349 ||||||||||||||||||||:!!!:!|||!!!||| !||| !.!!!.!||||||.. ysLeuLeuLeuPheIleMetMetLysSerThrIleProCysLysIleAsnLeuSerGl 445858 : AGTTGTTATTGTTCATCATGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGG : 445914 350 : nLeuPheThrProCysTyrValGlyPheSerThrMetIle : 362 !:!!|||.!!||||||||| !|||||||||:!!:!:||| yIlePheAlaProCysTyrLysGlyPheSerSerValIle 445915 : TATATTTGCTCCGTGTTACAAAGGTTTTTCCTCGGTAATT : 445955 vulgar: AfOr122/130like_1 263 362 . KQ414815.1 445552 445955 + 252 M 52 156 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445553 445955 252 + . gene_id 1 ; sequence AfOr122/130like_1 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 445553 445710 . + . KQ414815.1 exonerate:protein2genome:local exon 445553 445710 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445711 445712 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445711 445816 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 445815 445816 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 445817 445955 . + . KQ414815.1 exonerate:protein2genome:local exon 445817 445955 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445553 445955 252 + . alignment_id 1 ; Query AfOr122/130like_1 ; Align 445553 264 156 ; Align 445818 317 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr122/130like_1 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 251 Query range: 263 -> 362 Target range: 441440 -> 441843 264 : AsnLeuGlnArgLeuPheLysAlaIleLysSerMetAspAspProLeuGluThrPheT : 283 ::!:!!..!!:!:!! ! ||||||||| !!!!|||:!!|||! !||||||! !.!. HisValSerGlnIleValLysAlaIleValThrMetAsnAspGlnLeuGluIleLeuL 441441 : caTGTTTCACAGATAGTAAAAGCAATAGTGACAATGAATGATCAATTGGAGATACTGT : 441498 284 : hrCysIleIleLeuValLeuTyrHisLeuValPheIlePheIleAsnAsnTyrAsnGl : 302 ! !!|||!!::!!||| ! !!|||:!!||||||:!:|||.!!||||||||| || euSerIleMetIleValSerAsnHisIleValPheLeuPhePheAsnAsnTyrAlaGl 441499 : TAAGTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGG : 441555 303 : yGlnLeuValIleAspSerSerLeuAsnMetPheAsnGlu{Il} >>>> Target : 316 |||||||:!!|||:!! !||| !.!.:!:||| !|||{ } 10 yGlnLeuLeuIleAsnHisSerGluGluValPheValGlu{Se}++ 441556 : ACAGTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA{TC}gt............ : 441601 317 : Intron 1 >>>> {e}TyrIleSerThrTrpTyrSerIleProLeuLysAlaGlnL : 330 6 bp {!}|||! !||||||||||||!!!:!!||||||!..||||||| ++{r}TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnL 441602 : .............ag{A}TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGA : 441745 331 : ysLeuLeuLeuPheIleMetLeuArgSerSerIleGluCysAlaPheArgLeuSerAs : 349 ||||||||||||||||||||:!!!:!|||!!!||| !||| !.!.!.!||||||.. ysLeuLeuLeuPheIleMetMetLysSerThrIleProCysLysMetAsnLeuSerGl 441746 : AGTTGTTATTGTTCATCATGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGG : 441802 350 : nLeuPheThrProCysTyrValGlyPheSerThrMetIle : 362 !:!!|||.!!||||||||| !|||||||||:!!:!:||| yIlePheAlaProCysTyrLysGlyPheSerSerValIle 441803 : TATATTTGCTCCGTGTTACAAAGGTTTTTCCTCGGTAATT : 441843 vulgar: AfOr122/130like_1 263 362 . KQ414815.1 441440 441843 + 251 M 52 156 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441441 441843 251 + . gene_id 2 ; sequence AfOr122/130like_1 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 441441 441598 . + . KQ414815.1 exonerate:protein2genome:local exon 441441 441598 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 441599 441600 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 441599 441704 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 441703 441704 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 441705 441843 . + . KQ414815.1 exonerate:protein2genome:local exon 441705 441843 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441441 441843 251 + . alignment_id 2 ; Query AfOr122/130like_1 ; Align 441441 264 156 ; Align 441706 317 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr122/130like_1 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 0 -> 78 Target range: 439271 -> 439505 1 : MetAspValPheHisLysGlnTyrArgThrTyrArgIleLeuSerLysIleValGlyL : 20 ||||||||||||:!!|||||||||||||||||||||:!!:!!! !...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 439272 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGCTAGGAC : 439329 21 : euTrpProTyrAspAspSerIleTyrArgTrpIleGlnArgLeuLeuLeuLeuMetLe : 39 |||||||||||..!.!.|||||||||!!! |||!!.|||:!!! !!!! !! !:! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 439330 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 439386 40 : uPheLeuCysGlyIleIlePheGlnIleMetAlaPheValLysSerLysIleLeuThr : 58 !.!.|||! !!|||||||||:!!:!:||| !.!. |||||| ! eMetLeuSerCysIleIlePheGluValMetGlnIleArgPheLeuPheIleLeuTrp 439387 : TATGCTTTCGTGTATTATATTTGAGGTGATGCAAATAcggtttctttttatcttatGG : 439443 59 : LeuArgSerCysIleLeuIlePheSerThrIleCysProCysValIlePhePheLeuA : 78 :!! !!!!|||.!! ! !!:!! ! !|||!! !||| ! !|||.!!:!!! ValSer***CysPheGluHisTyrPheGluIle***LysCys******PheLeuValL 439444 : GTATCATGATGCTTTGAACATTATTTCGAGATATGAAAGTGTTAATAATTCCTCGTTA : 439503 79 : rg : 78 :! ys 439504 : AA : 439505 vulgar: AfOr122/130like_1 0 78 . KQ414815.1 439271 439505 + 148 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439272 439505 148 + . gene_id 3 ; sequence AfOr122/130like_1 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 439272 439505 . + . KQ414815.1 exonerate:protein2genome:local exon 439272 439505 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 439272 439505 148 + . alignment_id 3 ; Query AfOr122/130like_1 ; Align 439272 1 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr122/130like_1 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 0 -> 49 Target range: 443381 -> 443528 1 : MetAspValPheHisLysGlnTyrArgThrTyrArgIleLeuSerLysIleValGlyL : 20 ||||||||||||:!!|||||||||||||||||||||:!!:!!! !...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 443382 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGTTAGGAC : 443439 21 : euTrpProTyrAspAspSerIleTyrArgTrpIleGlnArgLeuLeuLeuLeuMetLe : 39 |||||||||||..!.!.|||||||||!!! |||!!.|||:!!! !!!! !! !:! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 443440 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 443496 40 : uPheLeuCysGlyIleIlePheGlnIleMet : 49 !.!.|||! !!|||||||||:!!:!:||| eIleLeuSerCysIleIlePheGluValMet 443497 : TATACTTTCGTGTATTATATTTGAGGTGATG : 443528 vulgar: AfOr122/130like_1 0 49 . KQ414815.1 443381 443528 + 146 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 443382 443528 146 + . gene_id 4 ; sequence AfOr122/130like_1 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 443382 443528 . + . KQ414815.1 exonerate:protein2genome:local exon 443382 443528 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 443382 443528 146 + . alignment_id 4 ; Query AfOr122/130like_1 ; Align 443382 1 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr122/130like_1 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 127 -> 199 Target range: 440495 -> 440711 128 : IleLeuLeuAsnLeuMetIleSerLeuAsnGluSerHisIleAsnTyrValIleTyrI : 147 :!!! !:!!:!!|||:!::!! !!||||||:!!|||... !..!|||:!! |||. ValSerMetAspLeuLeuValProLeuAsnLysSerArgProArgTyrLeuGlyTyrP 440496 : GTATCAATGGATCTGTTAGTACCATTGAACAAATCCAGACCTCGTTATCTTGGctact : 440553 148 : leThrMetPheCysAspAspArgIleValCysIleTyrMetValTyrLeuThrLeuIl : 166 .. :::... ..!:!!!:!||| !! !||| !!.!.:!! !!! ! !! hePheIleLeuProSerAsnGlnIleGlnTyrIleAspPheMetThrPheTyrGlyTh 440554 : tttttattcttccctCTAATCAAATACAGTATATTGATTTTATGACATTTTATGGGAC : 440610 167 : eLeuIleIlePhePheGlyLeuLeuSerLeuThrCysThrGluSerLeuPheAsnIle : 185 !|||:!! !||| ! |||||||||!!!:!!||||||||||||||||||.!!!:!||| rLeuValProPheValGlyLeuLeuThrValThrCysThrGluSerLeuLeuSerIle 440611 : ATTAGTTCCCTTTGTGGGATTATTAACTGTAACATGCACGGAATCGCTTCTTAGTATT : 440667 186 : LeuSerHisHisLeuCysGlyLeuPheAsnIleMetSerTyr : 199 :!!:!! :!!:!! !!.!!|||!:!!!.|||! .!!||| IleAlaMetTyrValSerSerLeuTyrLysIleThrGlyTyr 440668 : ATCGCAATGTATGTGAGCAGTTTATATAAGATTACTGGGTAC : 440711 vulgar: AfOr122/130like_1 127 199 . KQ414815.1 440495 440711 + 108 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 440496 440711 108 + . gene_id 5 ; sequence AfOr122/130like_1 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 440496 440711 . + . KQ414815.1 exonerate:protein2genome:local exon 440496 440711 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 440496 440711 108 + . alignment_id 5 ; Query AfOr122/130like_1 ; Align 440496 128 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 154 -> 224 Target range: 485722 -> 485932 155 : IleLeuAsnIleIleSerProLeuAsnValSerArgGlyArgGluLeuIleTyrProS : 174 ||||||:!!|||:!:! !||||||||| !!!!||| !||| !:!! ! !| IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 175 : erTyrTyrPheValAspGluGluLysTyrTyrTyrProIleLeuMetHisMetIleAl : 193 || ! :!!|||||||||:!!:!!||||||!:!||||||||| ! |||:!::!! erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 194 : aValAlaLeuIleLeuThrSerValTyrValAlaCysAspThrTyrLeuValTyrIle : 212 ! !!!.!:!!||| !.!!! !|||! :!!::! ::: :::::: ||| uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 213 : ValHisHisGlyCysAlaLeuLeuAlaIleSerGly : 224 :!!!!.||| !|||!.!|||! !.!!||| !||| IleGlnHisThrCysGlyLeuTyrThrIleValGly 485895 : ATACAGCACACCTGTGGTTTGTATACAATCGTTGGG : 485932 vulgar: AfOr111 154 224 . KQ414815.1 485722 485932 + 136 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485932 136 + . gene_id 1 ; sequence AfOr111 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485932 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485932 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485932 136 + . alignment_id 1 ; Query AfOr111 ; Align 485723 155 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr122like_1 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 188 Query range: 329 -> 387 Target range: 441705 -> 441952 330 : TyrAlaSerThrTrpTyrArgIleProLeuLysAlaGlnLysLeuLeuLeuPheMetI : 349 ||| !|||||||||||| !!:!!||||||!..|||||||||||||||||||||!!:! TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 350 : leLeuArgSerSerMetGlyCysGluLeuGlyLeuSerGlyLeuPheThrProSerTy : 368 !::!!!:!|||!!!!!: !|||:!!:!!..!|||||||||:!!|||.!!|||!!!|| etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 369 : rAlaGlyPheThrSer >>>> Target Intron 1 >>>> MetMetSerSerS : 378 | !||||||:!!||| 73 bp |||!!:|||!!!| rLysGlyPheSerSer++ ++MetIleSerThrS 441821 : CAAAGGTTTTTCCTCGgt.........................agATGATAAGCACTT : 441923 379 : erPheSerTyrCysAlaValIleTyrSer : 387 ||||||||||| !|||!.!||||||||| erPheSerTyrValAlaAlaIleTyrSer 441924 : CCTTCTCGTATGTCGCAGCGATATATTCG : 441952 vulgar: AfOr122like_1 329 387 . KQ414815.1 441705 441952 + 188 M 44 132 5 0 2 I 0 69 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441952 188 + . gene_id 1 ; sequence AfOr122like_1 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 441706 441837 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441837 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 441838 441839 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 441838 441910 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 441909 441910 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 441911 441952 . + . KQ414815.1 exonerate:protein2genome:local exon 441911 441952 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441952 188 + . alignment_id 1 ; Query AfOr122like_1 ; Align 441706 330 132 ; Align 441911 374 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr122like_1 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 184 Query range: 329 -> 387 Target range: 445817 -> 446064 330 : TyrAlaSerThrTrpTyrArgIleProLeuLysAlaGlnLysLeuLeuLeuPheMetI : 349 ||| !|||||||||||| !!:!!||||||!..|||||||||||||||||||||!!:! TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 350 : leLeuArgSerSerMetGlyCysGluLeuGlyLeuSerGlyLeuPheThrProSerTy : 368 !::!!!:!|||!!!!!: !|||:!!:!!..!|||||||||:!!|||.!!|||!!!|| etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 369 : rAlaGlyPheThrSer >>>> Target Intron 1 >>>> MetMetSerSerS : 378 | !||||||:!!||| 73 bp |||!!:|||!!!| rLysGlyPheSerSer++ ++MetIleSerThrS 445933 : CAAAGGTTTTTCCTCGgt.........................agATGATAAGCACTT : 446035 379 : erPheSerTyrCysAlaValIleTyrSer : 387 ||||||||||| !.!!!.!||||||||| erPheSerTyrValThrAlaIleTyrSer 446036 : CTTTCTCGTATGTCACAGCGATATATTCG : 446064 vulgar: AfOr122like_1 329 387 . KQ414815.1 445817 446064 + 184 M 44 132 5 0 2 I 0 69 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 446064 184 + . gene_id 2 ; sequence AfOr122like_1 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 445818 445949 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445949 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445950 445951 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445950 446022 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 446021 446022 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 446023 446064 . + . KQ414815.1 exonerate:protein2genome:local exon 446023 446064 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 446064 184 + . alignment_id 2 ; Query AfOr122like_1 ; Align 445818 330 132 ; Align 446023 374 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr122like_1 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 0 -> 49 Target range: 439271 -> 439418 1 : MetAspValPheAspLysGlnTyrArgIleTyrArgMetValLeuLysIleIleGlyL : 20 ||||||||||||:!!||||||||||||! !||||||:!::!!|||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 439272 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGCTAGGAC : 439329 21 : euTrpProTyrAspAsnSerIleTyrValTrpIleGlnArgIleCysLeuLeuLeuTy : 39 |||||||||||..!.!.||||||||| ! |||!!.||||||! !!! ! ! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 439330 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 439386 40 : rPheLeuSerGlyValIlePheGlnIleIle : 49 !.!.|||||| !!:!!||||||:!!:!:!!: eMetLeuSerCysIleIlePheGluValMet 439387 : TATGCTTTCGTGTATTATATTTGAGGTGATG : 439418 vulgar: AfOr122like_1 0 49 . KQ414815.1 439271 439418 + 145 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439272 439418 145 + . gene_id 3 ; sequence AfOr122like_1 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 439272 439418 . + . KQ414815.1 exonerate:protein2genome:local exon 439272 439418 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 439272 439418 145 + . alignment_id 3 ; Query AfOr122like_1 ; Align 439272 1 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr122like_1 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 0 -> 49 Target range: 443381 -> 443528 1 : MetAspValPheAspLysGlnTyrArgIleTyrArgMetValLeuLysIleIleGlyL : 20 ||||||||||||:!!||||||||||||! !||||||:!::!!|||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 443382 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGTTAGGAC : 443439 21 : euTrpProTyrAspAsnSerIleTyrValTrpIleGlnArgIleCysLeuLeuLeuTy : 39 |||||||||||..!.!.||||||||| ! |||!!.||||||! !!! ! ! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 443440 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 443496 40 : rPheLeuSerGlyValIlePheGlnIleIle : 49 !.!.|||||| !!:!!||||||:!!:!:!!: eIleLeuSerCysIleIlePheGluValMet 443497 : TATACTTTCGTGTATTATATTTGAGGTGATG : 443528 vulgar: AfOr122like_1 0 49 . KQ414815.1 443381 443528 + 145 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 443382 443528 145 + . gene_id 4 ; sequence AfOr122like_1 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 443382 443528 . + . KQ414815.1 exonerate:protein2genome:local exon 443382 443528 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 443382 443528 145 + . alignment_id 4 ; Query AfOr122like_1 ; Align 443382 1 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr122like_3 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 330 -> 388 Target range: 441705 -> 441952 331 : HisSerSerThrTrpTyrArgIleProLeuLysAlaGlnLysLeuLeuLeuPheMetI : 350 :!!!:!|||||||||||| !!:!!||||||!..|||||||||||||||||||||!!:! TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 351 : leValArgSerSerMetGlyCysGluLeuCysLeuSerGlyLeuPheThrProSerTy : 369 !::!!!:!|||!!!!!: !|||:!!:!! !|||||||||:!!|||.!!|||!!!|| etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 370 : rAlaGlyPheMetSer >>>> Target Intron 1 >>>> MetIleSerSerS : 379 | !|||||| ||| 73 bp |||||||||!!!| rLysGlyPheSerSer++ ++MetIleSerThrS 441821 : CAAAGGTTTTTCCTCGgt.........................agATGATAAGCACTT : 441923 380 : erPheSerTyrCysAlaValIleTyrSer : 388 ||||||||||| !|||!.!||||||||| erPheSerTyrValAlaAlaIleTyrSer 441924 : CCTTCTCGTATGTCGCAGCGATATATTCG : 441952 vulgar: AfOr122like_3 330 388 . KQ414815.1 441705 441952 + 183 M 44 132 5 0 2 I 0 69 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441952 183 + . gene_id 1 ; sequence AfOr122like_3 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 441706 441837 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441837 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 441838 441839 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 441838 441910 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 441909 441910 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 441911 441952 . + . KQ414815.1 exonerate:protein2genome:local exon 441911 441952 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441952 183 + . alignment_id 1 ; Query AfOr122like_3 ; Align 441706 331 132 ; Align 441911 375 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr122like_3 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 179 Query range: 330 -> 388 Target range: 445817 -> 446064 331 : HisSerSerThrTrpTyrArgIleProLeuLysAlaGlnLysLeuLeuLeuPheMetI : 350 :!!!:!|||||||||||| !!:!!||||||!..|||||||||||||||||||||!!:! TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 351 : leValArgSerSerMetGlyCysGluLeuCysLeuSerGlyLeuPheThrProSerTy : 369 !::!!!:!|||!!!!!: !|||:!!:!! !|||||||||:!!|||.!!|||!!!|| etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 370 : rAlaGlyPheMetSer >>>> Target Intron 1 >>>> MetIleSerSerS : 379 | !|||||| ||| 73 bp |||||||||!!!| rLysGlyPheSerSer++ ++MetIleSerThrS 445933 : CAAAGGTTTTTCCTCGgt.........................agATGATAAGCACTT : 446035 380 : erPheSerTyrCysAlaValIleTyrSer : 388 ||||||||||| !.!!!.!||||||||| erPheSerTyrValThrAlaIleTyrSer 446036 : CTTTCTCGTATGTCACAGCGATATATTCG : 446064 vulgar: AfOr122like_3 330 388 . KQ414815.1 445817 446064 + 179 M 44 132 5 0 2 I 0 69 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 446064 179 + . gene_id 2 ; sequence AfOr122like_3 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 445818 445949 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445949 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445950 445951 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445950 446022 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 446021 446022 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 446023 446064 . + . KQ414815.1 exonerate:protein2genome:local exon 446023 446064 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 446064 179 + . alignment_id 2 ; Query AfOr122like_3 ; Align 445818 331 132 ; Align 446023 375 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr122like_3 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 0 -> 49 Target range: 439271 -> 439418 1 : MetAsnValPheAspAsnHisTyrHisThrTyrArgThrValLeuLysIleValGlyL : 20 |||:!!||||||:!!!!.!!.|||...||||||||| !:!!|||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 439272 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGCTAGGAC : 439329 21 : euTrpProTyrAspAsnSerIleTyrValTrpIleGlnArgIleCysLeuLeuIlePh : 39 |||||||||||..!.!.||||||||| ! |||!!.||||||! !!! !! .! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 439330 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 439386 40 : ePheLeuIleIleIleLeuPheGlnIleIle : 49 !.!.||| !|||:!!|||:!!:!:!!: eMetLeuSerCysIleIlePheGluValMet 439387 : TATGCTTTCGTGTATTATATTTGAGGTGATG : 439418 vulgar: AfOr122like_3 0 49 . KQ414815.1 439271 439418 + 123 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439272 439418 123 + . gene_id 3 ; sequence AfOr122like_3 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 439272 439418 . + . KQ414815.1 exonerate:protein2genome:local exon 439272 439418 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 439272 439418 123 + . alignment_id 3 ; Query AfOr122like_3 ; Align 439272 1 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr122like_3 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 0 -> 49 Target range: 443381 -> 443528 1 : MetAsnValPheAspAsnHisTyrHisThrTyrArgThrValLeuLysIleValGlyL : 20 |||:!!||||||:!!!!.!!.|||...||||||||| !:!!|||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 443382 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGTTAGGAC : 443439 21 : euTrpProTyrAspAsnSerIleTyrValTrpIleGlnArgIleCysLeuLeuIlePh : 39 |||||||||||..!.!.||||||||| ! |||!!.||||||! !!! !! .! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 443440 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 443496 40 : ePheLeuIleIleIleLeuPheGlnIleIle : 49 !.!.||| !|||:!!|||:!!:!:!!: eIleLeuSerCysIleIlePheGluValMet 443497 : TATACTTTCGTGTATTATATTTGAGGTGATG : 443528 vulgar: AfOr122like_3 0 49 . KQ414815.1 443381 443528 + 123 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 443382 443528 123 + . gene_id 4 ; sequence AfOr122like_3 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 443382 443528 . + . KQ414815.1 exonerate:protein2genome:local exon 443382 443528 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 443382 443528 123 + . alignment_id 4 ; Query AfOr122like_3 ; Align 443382 1 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr122like_3 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 128 -> 253 Target range: 440450 -> 440913 129 : SerPhePheGlyIleAlaAlaValIleIlePheLeuLeuAsnProValThrLeuAspI : 148 :!!!:!|||||||||.!! !..!:!:! |||||| !!||||||:!!:!!|||: AlaTyrPheGlyIleThrIleThrValThrThrLeuLeuTyrProValSerMetAspL 440451 : GCTTACTTTGGGATCACAATTACCGTGACGACATTATTATACCCAGTATCAATGGATC : 440508 149 : leIleMetProLeuAsnGluSerArgThrHisPhe<->AsnValLeuPheLeuPheAs : 166 !::!!:!:|||||||||:!!|||||| !!!.!!:! ... ...|||:::... euLeuValProLeuAsnLysSerArgProArgTyrLeuGlyTyrPhePheIleLeuPr 440509 : TGTTAGTACCATTGAACAAATCCAGACCTCGTTATCTTGGctacttttttattcttcc : 440565 167 : pAspGlnSerProCysIleLysIlePheLeuIleLeuAsnPheMetLeuIleMetLeu : 185 ..!.!...! ! !! !|||:!!! !!!! !! ! |||:!! !!! oSerAsnGlnIleGlnTyrIleAspPheMetThrPheTyrGlyThrLeuValProPhe 440566 : ctCTAATCAAATACAGTATATTGATTTTATGACATTTTATGGGACATTAGTTCCCTTT : 440622 186 : PheGlyLeuLeuSerLeuIleGlyThrGluSerLeuThrAsnIlePheSerTyrTyrI : 205 ! |||||||||!!!:!!! ! !!|||||||||||| !!:!|||.!!:!! |||: ValGlyLeuLeuThrValThrCysThrGluSerLeuLeuSerIleIleAlaMetTyrV 440623 : GTGGGATTATTAACTGTAACATGCACGGAATCGCTTCTTAGTATTATCGCAATGTATG : 440682 206 : leCysArgLysPheTyrIleAla{Se} >>>> Target Intron 1 >>>> {r : 213 !: !!!!! !!:! ! |||.!!{.!} 91 bp {! alSerSerLeuTyrLysIleThr{Gl}++ ++{y 440683 : TGAGCAGTTTATATAAGATTACT{GG}gt.........................ag{C : 440799 214 : }TyrArgIleArgLysIleIleGluAspLeuGlyIleIleThrMetProLysGlnIle : 232 }||||||:!! !!||| !|||..!:!! ! !! ! :!!.!. !... ! }TyrArgLeuGlyLysAlaIleSerAsnAlaThrLysThrSerPheMetSerVal--- 440800 : }TATCGCTTAGGAAAAGCTATTTCGAACGCGACGAAGACGTCTTTCATGTCCGTA--- : 440854 233 : AspLeuLysLeuThrAspIleHisArgValValAspIleHisAsnGlnAlaIleGluL : 252 ! !!!.! !||||||.!!:!! !!!.!||||||||||||!..::! !|||:!!| ---GlnAsnTyrThrAspPheTyrCysAlaValAspIleHisThrArgIleIleLysL 440855 : ---CAGAATTACACCGACTTCTACTGTGCCGTGGACATTCACACAAGAATTATAAAGT : 440908 253 : euIle : 253 ||:!! euVal 440909 : TGGTA : 440913 vulgar: AfOr122like_3 128 253 . KQ414815.1 440450 440913 + 116 M 31 93 G 0 3 M 53 159 S 0 2 5 0 2 I 0 87 3 0 2 S 1 1 M 18 54 G 2 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 440451 440913 116 + . gene_id 5 ; sequence AfOr122like_3 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 440451 440707 . + . KQ414815.1 exonerate:protein2genome:local exon 440451 440707 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 440708 440709 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 440708 440798 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 440797 440798 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 440799 440913 . + . KQ414815.1 exonerate:protein2genome:local exon 440799 440913 . + . insertions 0 ; deletions 2 KQ414815.1 exonerate:protein2genome:local similarity 440451 440913 116 + . alignment_id 5 ; Query AfOr122like_3 ; Align 440451 129 93 ; Align 440547 160 159 ; Align 440800 214 54 ; Align 440854 234 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr105 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 110 -> 234 Target range: 456822 -> 457405 111 : PheLysLysLeuPheTyrSerLeuAlaGlnAspTrpLysSerLeuGluSerLysGluG : 130 .!.::!:!!:!!!:! !!!:!:!!|||.!.|||||||||||||||:!!!:!! !|||| IleArgGluIleTyrAspAsnIleAlaAspAspTrpLysSerLeuLysAsnMetGluG 456823 : ATACGGGAGATTTACGACAATATCGCTGACGATTGGAAATCATTGAAGAACATGGAAG : 456880 131 : luLeuIleMetLeuAspLysPheThrGlnTyrGlySerLysLeuAlaLeuLeuTyrAr : 149 ||:!! :::::: |||:::..!.!. !|||!!!!:!!!!.!!||| ! luIleGluIleIleArgLysTyrAlaAsnGlyGlyArgArgPheThrLeuAlaIleAl 456881 : AAATCGagattattcgaaaatatgcGAACGGTGGCAGGAGATTTACACTTGCAATAGC : 456937 150 : g{L} >>>> Target Intron 1 >>>> {ys}SerLeuLeuThrPheLeuVal : 157 !{!} 214 bp { }||| !! ! ! ! !:!! a{I}++ ++{le}SerThrTyrCysGlyAlaLeu 456938 : A{A}gt.........................ag{TT}TCTACTTATTGTGGCGCACTG : 457175 158 : IlePheLeuSerLeuProLeuCysAsnProIleLeuAspIleIleLeuProLeuAsnG : 177 :!!.!! !!!!|||! !|||! ! !:!!|||||||||:!::!!|||||||||| ValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnG 457176 : GTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACG : 457235 178 : luThrArgProArgGlnAsnIlePheAsnValAsnTyrIleIleLeuAspAsnTyrGl : 196 ||:!!|||||| !!:!! !.!!!..!.!.!.|||.!!:!! |||! ! :! luSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheVal---AspMetLysLy 457236 : AATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTC---GACATGAAAAA : 457289 197 : uTyrPheTyrIleValTyrValHisLeuSerCysSerAlaAlaIleIleValIleIle : 215 !|||.!.:!! !:!! !!.!|||:!!! ! !!! ! !||| !.!! !! sTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThr 457290 : GTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACG : 457346 216 : IleIleSerValAspSerLeuTyrIleSerIleIleTyrHisAlaCysGlyLeuPhe : 234 :!!! !:!! !!!:|||||| !|||!!!! !:!! |||!.!|||||||||||| LeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPhe 457347 : TTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTC : 457405 vulgar: AfOr105 110 234 . KQ414815.1 456822 457405 + 149 M 39 117 S 0 1 5 0 2 I 0 210 3 0 2 S 1 2 M 41 123 G 1 0 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 456823 457405 149 + . gene_id 1 ; sequence AfOr105 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 456823 456940 . + . KQ414815.1 exonerate:protein2genome:local exon 456823 456940 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 456941 456942 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 456941 457154 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457153 457154 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457155 457405 . + . KQ414815.1 exonerate:protein2genome:local exon 457155 457405 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 456823 457405 149 + . alignment_id 1 ; Query AfOr105 ; Align 456823 111 117 ; Align 457157 151 123 ; Align 457280 193 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr105 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 165 -> 238 Target range: 485716 -> 485932 166 : AsnProIleLeuAspIleIleLeuProLeuAsnGluThrArgProArgGlnAsnIleP : 185 ||| !||||||||||||:!::!!||||||||| ! |||||||||||| !! ! !. AsnSerIleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProI 485717 : AACAGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTA : 485774 186 : heAsnValAsnTyrIleIleLeuAspAsnTyrGluTyrPheTyrIleValTyrValHi : 204 !.||| !.!.:!!.!!:!! |||.!. ! :!!||||||||| !:!! !.!|| leAsnSerGluHisPheVal---AspGlnGlnLysTyrPheTyrProIleAlaAlaHi 485775 : TAAACTCGGAACATTTTGTC---GATCAGCAAAAGTATTTCTACCCTATTGCAGCACA : 485828 205 : sLeuSerCysSerAlaAlaIleIleValIleIleIleIleSerValAspSerLeuTyr : 223 |:!! ! !! !!.! !||| !!.!|||:!!:!!:!!|||...::: ||| sValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIle 485829 : TGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaatt : 485885 224 : IleSerIleIleTyrHisAlaCysGlyLeuPheAlaAlaCysGly : 238 ::::!!|||||| ! |||.!!|||||||||!:!.!! ! !||| MetAlaIleIleGlnHisThrCysGlyLeuTyrThrIleValGly 485886 : atggCGATAATACAGCACACCTGTGGTTTGTATACAATCGTTGGG : 485932 vulgar: AfOr105 165 238 . KQ414815.1 485716 485932 + 136 M 26 78 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485717 485932 136 + . gene_id 2 ; sequence AfOr105 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485717 485932 . + . KQ414815.1 exonerate:protein2genome:local exon 485717 485932 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 485717 485932 136 + . alignment_id 2 ; Query AfOr105 ; Align 485717 166 78 ; Align 485795 193 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr105 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 155 -> 234 Target range: 481995 -> 482229 156 : LeuValIlePheLeuSerLeuProLeuCysAsnProIleLeuAspIleIleLeuProL : 175 :!!:!!|||.!.:!! !! !! !:!!! !:! !:!!||||||:!!|||:!!|||| ValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValProL 481996 : GTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTCCTC : 482053 176 : euAsnGluThrArgProArgGlnAsnIlePheAsnValAsnTyrIleIleLeuAspAs : 194 |||||||||||||| !!!.!||| ! ! ! ::::!!.!.|||.!!||| |||.! euAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPheIle---AspGl 482054 : TAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATT---GACCA : 482107 195 : nTyrGluTyrPheTyrIleValTyrValHisLeuSerCysSerAlaAlaIleIleVal : 213 . ! :!!|||! !.!!:!! !!|||! !!!!! !||| ! !:!!:!!!.! nGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAla 482108 : GCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCA : 482164 214 : IleIleIleIleSerValAspSerLeuTyrIleSerIleIleTyrHisAlaCysGlyL : 233 ! ||||||:!!.!!:!!!!:!!!||| !:!!! ! :!! ! ||||||....!!| ThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerL 482165 : ACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCT : 482224 234 : euPhe : 234 ||||| euPhe 482225 : TGTTC : 482229 vulgar: AfOr105 155 234 . KQ414815.1 481995 482229 + 104 M 36 108 G 1 0 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481996 482229 104 + . gene_id 3 ; sequence AfOr105 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481996 482229 . + . KQ414815.1 exonerate:protein2genome:local exon 481996 482229 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 481996 482229 104 + . alignment_id 3 ; Query AfOr105 ; Align 481996 156 108 ; Align 482104 193 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr132like_1 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 5 -> 89 Target range: 443393 -> 444040 6 : SerLysHisTyrArgThrTyrArgThrIleMetLysIleValGlyLeuTrpProTyrA : 25 !:!|||!!.||||||||||||||| !!!::!:...:!::!!|||||||||||||||: AsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyLeuTrpProTyrS 443394 : AACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGTTAGGACTCTGGCCTTATT : 443451 26 : snAsnSerIleTyrValTrpIleGlnArgLeuLeuLeuLeuAlaPheTyrLeuGlyAs : 44 :!.!.||||||||| ! |||!!.|||:!!! !!!! !.!!.!! |||..! erGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIleIleLeuSerCy 443452 : CTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGATTATACTTTCGTG : 443508 45 : nValValPheGln >>>> Target Intron 1 >>>> IleValSerLeuLeuT : 54 !:!!:!!|||:!! 395 bp |||!.!!!!|||:!!: sIleIlePheGlu++ ++IleAlaThrLeuValS 443509 : TATTATATTTGAGgt.........................agATAGCGACACTCGTTT : 443933 55 : hrSerGluIleThrLeuGlnAsnCysIleLeuIleLeuSerThrThrCysProLeuVa : 73 !!! !|||! !.!!! :::||| ::: !! !! !..! ! ! !||||| erPheGluArgAlaSerGluAsnIleLeuGlnThrCysPheValCysProLeuLeuVa 443934 : CTTTTGAAAGAGCATCggaaaatattcttcagaCTTGTTTCGTATGTCCTTTGCTCGT : 443990 74 : lIleValSerLeuArgTyrValSerLeuIleLeuPhePheProThrIle : 89 |:!! !!! ! !||||||||||||!!!|||! ! !|||||| !:!! lLeuPhePheGluArgTyrValSerPheIleCysAsnPheProPheVal 443991 : GTTATTCTTCGAGCGATACGTTTCATTCATCTGTAACTTTCCATTTGTA : 444040 vulgar: AfOr132like_1 5 89 . KQ414815.1 443393 444040 + 130 M 43 129 5 0 2 I 0 391 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 443394 444040 130 + . gene_id 1 ; sequence AfOr132like_1 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 443394 443522 . + . KQ414815.1 exonerate:protein2genome:local exon 443394 443522 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 443523 443524 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 443523 443917 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 443916 443917 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 443918 444040 . + . KQ414815.1 exonerate:protein2genome:local exon 443918 444040 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 443394 444040 130 + . alignment_id 1 ; Query AfOr132like_1 ; Align 443394 6 129 ; Align 443918 49 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr132like_1 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 5 -> 86 Target range: 439283 -> 439921 6 : SerLysHisTyrArgThrTyrArgThrIleMetLysIleValGlyLeuTrpProTyrA : 25 !:!|||!!.||||||||||||||| !!!::!:...:!::!!|||||||||||||||: AsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyLeuTrpProTyrS 439284 : AACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGCTAGGACTCTGGCCTTATT : 439341 26 : snAsnSerIleTyrValTrpIleGlnArgLeuLeuLeuLeuAlaPheTyrLeuGlyAs : 44 :!.!.||||||||| ! |||!!.|||:!!! !!!! !.!!.!! |||..! erGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIleMetLeuSerCy 439342 : CTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGATTATGCTTTCGTG : 439398 45 : nValValPheGln >>>> Target Intron 1 >>>> IleValSerLeuLeuT : 54 !:!!:!!|||:!! 395 bp |||!.!!!!|||:!!: sIleIlePheGlu++ ++IleAlaThrLeuValS 439399 : TATTATATTTGAGgt.........................agATAGCGACACTCGTTT : 439823 55 : hrSerGluIleThrLeuGlnAsnCysIleLeuIleLeuSerThrThrCysProLeuVa : 73 !!! !|||! !.!!! :::||| ::: !! !! !..! ! ! !||||| erPheGluArgAlaSerGluAsnIleLeuGlnThrCysPheValCysProLeuLeuVa 439824 : CTTTTGAAAGAGCATCggaaaatattcttcagaCTTGTTTCGTATGTCCTTTGCTCGT : 439880 74 : lIleValSerLeuArgTyrValSerLeuIleLeuPhePhe : 86 |:!! !!! ! !||||||||||||!!!|||! ! !||| lLeuPhePheGluArgTyrValSerPheIleCysAsnPhe 439881 : GTTATTCTTCGAGCGATACGTTTCATTCATCTGTAACTTT : 439921 vulgar: AfOr132like_1 5 86 . KQ414815.1 439283 439921 + 122 M 43 129 5 0 2 I 0 391 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439284 439921 122 + . gene_id 2 ; sequence AfOr132like_1 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 439284 439412 . + . KQ414815.1 exonerate:protein2genome:local exon 439284 439412 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 439413 439414 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 439413 439807 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 439806 439807 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 439808 439921 . + . KQ414815.1 exonerate:protein2genome:local exon 439808 439921 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 439284 439921 122 + . alignment_id 2 ; Query AfOr132like_1 ; Align 439284 6 129 ; Align 439808 49 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr130_1P Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 330 -> 388 Target range: 445817 -> 446064 331 : TyrAsnSerMetTrpTyrSerMetProLeuLysAlaGlnLysIleLeuLeuMetIleI : 350 |||||||||! ||||||!!!:!:||||||!..|||||||||:!:||||||.!.|||! TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 351 : leLeuGlnSerSerThrThrTyrGlyPheAsnIleLeuAspLeuPheIleProCysHi : 369 !::!!:!!|||!!!! ! !!! ! !.!!|||:!!! !! !:!!||| !||||||:! etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 370 : sSerGlyPheSerThr >>>> Target Intron 1 >>>> MetLeuSerSerS : 379 !!.!|||||||||:!! 73 bp |||:!!|||!!!| rLysGlyPheSerSer++ ++MetIleSerThrS 445933 : CAAAGGTTTTTCCTCGgt.........................agATGATAAGCACTT : 446035 380 : erPheSerTyrPheThrLeuIleTyrSer : 388 ||||||||||| !!||| !||||||||| erPheSerTyrValThrAlaIleTyrSer 446036 : CTTTCTCGTATGTCACAGCGATATATTCG : 446064 vulgar: AfOr130_1P 330 388 . KQ414815.1 445817 446064 + 164 M 44 132 5 0 2 I 0 69 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 446064 164 + . gene_id 1 ; sequence AfOr130_1P ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 445818 445949 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445949 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445950 445951 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445950 446022 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 446021 446022 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 446023 446064 . + . KQ414815.1 exonerate:protein2genome:local exon 446023 446064 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 446064 164 + . alignment_id 1 ; Query AfOr130_1P ; Align 445818 331 132 ; Align 446023 375 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr130_1P Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 330 -> 388 Target range: 441705 -> 441952 331 : TyrAsnSerMetTrpTyrSerMetProLeuLysAlaGlnLysIleLeuLeuMetIleI : 350 |||||||||! ||||||!!!:!:||||||!..|||||||||:!:||||||.!.|||! TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 351 : leLeuGlnSerSerThrThrTyrGlyPheAsnIleLeuAspLeuPheIleProCysHi : 369 !::!!:!!|||!!!! ! !!! ! !.!.|||:!!! !! !:!!||| !||||||:! etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 370 : sSerGlyPheSerThr >>>> Target Intron 1 >>>> MetLeuSerSerS : 379 !!.!|||||||||:!! 73 bp |||:!!|||!!!| rLysGlyPheSerSer++ ++MetIleSerThrS 441821 : CAAAGGTTTTTCCTCGgt.........................agATGATAAGCACTT : 441923 380 : erPheSerTyrPheThrLeuIleTyrSer : 388 ||||||||||| !!.!! !||||||||| erPheSerTyrValAlaAlaIleTyrSer 441924 : CCTTCTCGTATGTCGCAGCGATATATTCG : 441952 vulgar: AfOr130_1P 330 388 . KQ414815.1 441705 441952 + 159 M 44 132 5 0 2 I 0 69 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441952 159 + . gene_id 2 ; sequence AfOr130_1P ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 441706 441837 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441837 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 441838 441839 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 441838 441910 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 441909 441910 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 441911 441952 . + . KQ414815.1 exonerate:protein2genome:local exon 441911 441952 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441952 159 + . alignment_id 2 ; Query AfOr130_1P ; Align 441706 331 132 ; Align 441911 375 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr130_1P Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 128 -> 213 Target range: 444562 -> 444823 129 : ThrTyrThrThrIleThrPheTyrSerAlaCysLeuPheTyrProAlaIleLeuAspL : 148 .!!||| ! !||||||.!! ! !.!! |||!!.||||||!.! !:!!|||| AlaTyrPheGlyIleThrIleIleValThrThrLeuLeuTyrProValSerMetAspL 444563 : GCTTACTTTGGGATCACAATTATCGTGACGACATTATTATACCCAGTATCAATGGATC : 444620 149 : euIleIleProLeuAsnGluSer<-><->UnkTyrSerSerTyrPheThrThrPheSe : 165 ||:!!:!!|||||||||.!.||| ||| !.!!||||||..!! !.!! ! euLeuValProLeuAsnAsnSerArgProArgTyrLeuGlyTyrPheValIleLeuPr 444621 : TGTTAGTACCTTTGAACAATTCCAGACCTCGTTATCTTGGCTACTTTGTTATTCTTCC : 444677 166 : rHisAspGlnThrIleTyrLeuAspIleLeuCysPheAspValThrPheIleThrThr : 184 ! !:!!|||! ! |||:!!|||.!!:!! ||| !!! !|||!!.:!! !! ! oSerAsnGlnIleGlnTyrIleAspPheMetThrPheTyrGlyThrLeuValProPhe 444678 : CTCTAATCAAATACAGTATATTGATTTTATGACATTTTATGGGACATTAGTTCCCTTT : 444734 185 : PheGlyLeuLeuSerIleThrCysSerGluSerIleThrGlyIleCysThrTyrTyrI : 204 ! |||||||||!!!:!!.!!|||!!!||||||:!! !.!!||| !!.!! |||: ValGlyLeuLeuThrValAlaCysThrGluSerLeuLeuSerIleSerAlaMetTyrL 444735 : GTGGGATTATTAACTGTAGCATGCACGGAATCGCTTCTTAGTATTAGCGCAATGTATC : 444794 205 : leCysMetLeuLeuLysIleLeuSerTyr : 213 !:|||! |||! !|||||| !.!!||| euCysSerLeuTyrLysIleThrGlyTyr 444795 : TGTGCAGTTTATATAAGATTACTGGGTAC : 444823 vulgar: AfOr130_1P 128 213 . KQ414815.1 444562 444823 + 147 M 27 81 G 0 6 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 444563 444823 147 + . gene_id 3 ; sequence AfOr130_1P ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 444563 444823 . + . KQ414815.1 exonerate:protein2genome:local exon 444563 444823 . + . insertions 6 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 444563 444823 147 + . alignment_id 3 ; Query AfOr130_1P ; Align 444563 129 81 ; Align 444650 156 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr130_1P Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 128 -> 213 Target range: 440450 -> 440711 129 : ThrTyrThrThrIleThrPheTyrSerAlaCysLeuPheTyrProAlaIleLeuAspL : 148 .!!||| ! !||||||.!! ! !.!! |||!!.||||||!.! !:!!|||| AlaTyrPheGlyIleThrIleThrValThrThrLeuLeuTyrProValSerMetAspL 440451 : GCTTACTTTGGGATCACAATTACCGTGACGACATTATTATACCCAGTATCAATGGATC : 440508 149 : euIleIleProLeuAsnGluSer<-><->UnkTyrSerSerTyrPheThrThrPheSe : 165 ||:!!:!!|||||||||:!!||| ||| !.!.|||||| ... euLeuValProLeuAsnLysSerArgProArgTyrLeuGlyTyrPhePheIleLeuPr 440509 : TGTTAGTACCATTGAACAAATCCAGACCTCGTTATCTTGGctacttttttattcttcc : 440565 166 : rHisAspGlnThrIleTyrLeuAspIleLeuCysPheAspValThrPheIleThrThr : 184 !:!!|||! ! |||:!!|||.!!:!! ||| !!! !|||!!.:!! !! ! oSerAsnGlnIleGlnTyrIleAspPheMetThrPheTyrGlyThrLeuValProPhe 440566 : ctCTAATCAAATACAGTATATTGATTTTATGACATTTTATGGGACATTAGTTCCCTTT : 440622 185 : PheGlyLeuLeuSerIleThrCysSerGluSerIleThrGlyIleCysThrTyrTyrI : 204 ! |||||||||!!!:!!||||||!!!||||||:!! !.!!||| !.!! |||: ValGlyLeuLeuThrValThrCysThrGluSerLeuLeuSerIleIleAlaMetTyrV 440623 : GTGGGATTATTAACTGTAACATGCACGGAATCGCTTCTTAGTATTATCGCAATGTATG : 440682 205 : leCysMetLeuLeuLysIleLeuSerTyr : 213 !: !!! |||! !|||||| !.!!||| alSerSerLeuTyrLysIleThrGlyTyr 440683 : TGAGCAGTTTATATAAGATTACTGGGTAC : 440711 vulgar: AfOr130_1P 128 213 . KQ414815.1 440450 440711 + 141 M 27 81 G 0 6 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 440451 440711 141 + . gene_id 4 ; sequence AfOr130_1P ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 440451 440711 . + . KQ414815.1 exonerate:protein2genome:local exon 440451 440711 . + . insertions 6 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 440451 440711 141 + . alignment_id 4 ; Query AfOr130_1P ; Align 440451 129 81 ; Align 440538 156 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr130_1P Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 0 -> 51 Target range: 439271 -> 439424 1 : MetAspValPheAspLysGlnTyrArgIlePheArgIleValLeuLysIleValGlyL : 20 ||||||||||||:!!||||||||||||! !!:!|||:!!:!!|||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 439272 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGCTAGGAC : 439329 21 : euTrpProTyrAspAsnSerPheTyrValTrpIleGlnArgLeuTrpLeuIleAsnLe : 39 |||||||||||..!.!.|||.!!||| ! |||!!.|||:!!! !!!! !!..:! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 439330 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 439386 40 : uLeuSerSerLysTyrAsnIleSerValMetSerLeu : 51 !:!! !||| !! .!!..!||||||..!:!! eMetLeuSerCysIleIlePheGluValMetGlnIle 439387 : TATGCTTTCGTGTATTATATTTGAGGTGATGCAAATA : 439424 vulgar: AfOr130_1P 0 51 . KQ414815.1 439271 439424 + 120 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439272 439424 120 + . gene_id 5 ; sequence AfOr130_1P ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 439272 439424 . + . KQ414815.1 exonerate:protein2genome:local exon 439272 439424 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 439272 439424 120 + . alignment_id 5 ; Query AfOr130_1P ; Align 439272 1 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr130_1P Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 0 -> 51 Target range: 443381 -> 443534 1 : MetAspValPheAspLysGlnTyrArgIlePheArgIleValLeuLysIleValGlyL : 20 ||||||||||||:!!||||||||||||! !!:!|||:!!:!!|||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 443382 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGTTAGGAC : 443439 21 : euTrpProTyrAspAsnSerPheTyrValTrpIleGlnArgLeuTrpLeuIleAsnLe : 39 |||||||||||..!.!.|||.!!||| ! |||!!.|||:!!! !!!! !!..:! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 443440 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 443496 40 : uLeuSerSerLysTyrAsnIleSerValMetSerLeu : 51 !:!! !||| !! .!!..!||||||..!:!! eIleLeuSerCysIleIlePheGluValMetGlnIle 443497 : TATACTTTCGTGTATTATATTTGAGGTGATGCAAATA : 443534 vulgar: AfOr130_1P 0 51 . KQ414815.1 443381 443534 + 120 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 443382 443534 120 + . gene_id 6 ; sequence AfOr130_1P ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 443382 443534 . + . KQ414815.1 exonerate:protein2genome:local exon 443382 443534 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 443382 443534 120 + . alignment_id 6 ; Query AfOr130_1P ; Align 443382 1 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 118 -> 253 Target range: 448013 -> 448662 119 : ValPhePheIleLeuIleTyrValValAsnAlaTyrPheCysSerIleLeuPheLeuL : 138 :::|||...|||... ||| ! !!!.! !! !||| !||| !| IlePheLeuIlePheThrIleSerValValPheAlaLeuSerLeuIleSerPheThrL 448014 : atctttctcattttcacaatttcagtGGTGTTTGCCTTGTCTTTAATTAGCTTTACCT : 448071 139 : euLeuProPheThrProIleLeuLeuAspIlePheIleProLeuAsnGluSerArgPr : 157 ||:!! !|||..! ! ...|||||||||...!!:|||:!!|||! !|||! !! euValGluPheValValHisPheLeuAspIleLeuMetProMetAsnValSerThrAr 448072 : TGGTTGAGTTCGTGGTAcattttctcgatattttaATGCCAATGAACGTATCTACACG : 448128 158 : oArgValGlnMetTyrProAlaTyrTyrTyrIleGluAsnGluAlaAspTyrTyrTyr : 176 !!.!! !! ! !:!! ! ! ! ! !!:! !!!:.!.!!: ! !!:!:!!||| gHisGluLeuProPheLeuIleGlnCysPheCysAspGlnAspLysPhePheHisTyr 448129 : GCACGAGCTACCCTTCCTAATTCAATGTTTCTGTGATCAAGATAAATTCTTCCACTAT : 448185 177 : ProIleLeuIlePheSerIleValSerLeuLeuThrAlaMetCysValPheIleAlaT : 196 ||||||:!!|||! !|||||| ! !:!! !!.! !!||| ! :!!|||| ---IleLeuValPheLeuIleValLeuThrIleLeuGlyGlySerValValLeuAlaT 448186 : ---ATATTAGTTTTCTTGATCGTTCTCACTATTTTGGGTGGAAGTGTGGTATTAGCCA : 448242 197 : hrAspThrMetLeuIleTyrIleValGlnHisAlaCysGlyLeuLeuAlaLeuAla{G : 215 || |||! ! !:!: .!! !||||||..!|||||||||!!! !:!!|||{| hrThrThrThrTyrLeuIlePheSerGlnHisCysCysGlyLeuPheLysIleAla{G 448243 : CTACAACGACTTACTTGATATTCAGTCAACATTGTTGTGGATTGTTCAAAATTGCA{G : 448299 216 : l} >>>> Target Intron 1 >>>> {y}HisArgPheArgAsnSerLeuAsn : 223 |} 247 bp {|}:!!!:!.!.!:!:!!! !|||:!! l}++ ++{y}TyrLysIleGlnHisLeuLeuAsp 448300 : G}gt.........................ag{t}TACAAAATACAACATTTATTAGAC : 448570 224 : AspLeuTyrSerSerArgLysAspSerLysValAspGlyLysIleTyrArgArgLeuC : 243 :!! ! ! ! !..! !...|||! ! ! !:!! !! !:!!|||! !|||:!! AsnAspGluPheGluValSerAspIleAspGlnAsnLeuThrValTyrLeuArgIleI 448571 : AACGACGAGTTTGAAGTTTCTGATATCGATCAAAATCTCACAGTTTACCTGAGGATAA : 448630 244 : ysTyrAlaIleLysThrHisLysArgAlaLeu : 253 ! !!|||:!:|||! !||||||||||||||| leAsnAlaValLysMetHisLysArgAlaLeu 448631 : TTAATGCTGTGAAAATGCATAAGCGAGCTCTC : 448662 vulgar: AfOr106 118 253 . KQ414815.1 448013 448662 + 145 M 58 174 G 1 0 M 37 111 S 0 2 5 0 2 I 0 243 3 0 2 S 1 1 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448014 448662 145 + . gene_id 1 ; sequence AfOr106 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 448014 448300 . + . KQ414815.1 exonerate:protein2genome:local exon 448014 448300 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local splice5 448301 448302 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 448301 448547 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 448546 448547 . + . intron_id 0 ; splice_site "ag" KQ414815.1 exonerate:protein2genome:local cds 448548 448662 . + . KQ414815.1 exonerate:protein2genome:local exon 448548 448662 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448014 448662 145 + . alignment_id 1 ; Query AfOr106 ; Align 448014 119 174 ; Align 448188 178 111 ; Align 448549 216 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 124 -> 215 Target range: 485491 -> 485932 125 : TyrValValAsnAlaTyrPheCysSerIleLeuPhe >>>> Target Intron 1 : 137 !:!|||:!!|||||||||||| !!:!:!:||| 171 bp PheValLeuAsnAlaTyrPheValAsnLeuLeuHis+- 485492 : TTTGTTCTCAATGCATACTTCGTTAATCTGTTGcatga.................... : 485530 138 : >>>> LeuLeuLeuProPheThrProIleLeuLeuAspIlePheIleProLeuAsn : 153 :!!||| ! !|||!.! !! !:!!|||||||||!!.|||||||||||| -+IleLeuGlyIlePheAsnAsnSerIleLeuAspIleLeuIleProLeuAsn 485531 : .....tgATTCTTGGTATATTTAACAACAGTATTCTGGACATTTTGATTCCTTTGAAT : 485747 154 : GluSerArgProArgValGlnMetTyrProAlaTyrTyrTyrIleGluAsnGluAlaA : 173 ! !!!|||||||||..! !:!! ! :!!!:!:!!!!:.!.:!! TyrThrArgProArgThrIleProIleAsnSerGluHisPheValAspGlnGln---L 485748 : TACACTCGTCCGCGGACGATTCCTATAAACTCGGAACATTTTGTCGATCAGCAA---A : 485804 174 : spTyrTyrTyrProIleLeuIlePheSerIleValSerLeuLeuThrAlaMetCysVa : 192 ! |||!:!||||||||| ! ! ! !:!!:!!! !:!!:!!! !!.! ! || ysTyrPheTyrProIleAlaAlaHisValValLeuPheValIleIleGlyAlaIleVa 485805 : AGTATTTCTACCCTATTGCAGCACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGT : 485861 193 : lPheIleAlaThrAspThrMetLeuIleTyrIleValGlnHisAlaCysGlyLeuLeu : 211 |!!.:!!::!|||::: ::::::::: |||:!!||||||.!!|||||||||! ! lLeuLeuSerThrGluIleLeuIleMetAlaIleIleGlnHisThrCysGlyLeuTyr 485862 : ATTACTCAGCaccgaaatattaattatggCGATAATACAGCACACCTGTGGTTTGTAT : 485918 212 : AlaLeuAlaGly : 215 .!!:!!!.!||| ThrIleValGly 485919 : ACAATCGTTGGG : 485932 vulgar: AfOr106 124 215 . KQ414815.1 485491 485932 + 132 M 12 36 5 0 2 I 0 167 3 0 2 M 35 105 G 1 0 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485492 485932 132 + . gene_id 2 ; sequence AfOr106 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 485492 485527 . + . KQ414815.1 exonerate:protein2genome:local exon 485492 485527 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 485528 485529 . + . intron_id 1 ; splice_site "ga" KQ414815.1 exonerate:protein2genome:local intron 485528 485698 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 485697 485698 . + . intron_id 0 ; splice_site "TG" KQ414815.1 exonerate:protein2genome:local cds 485699 485932 . + . KQ414815.1 exonerate:protein2genome:local exon 485699 485932 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 485492 485932 132 + . alignment_id 2 ; Query AfOr106 ; Align 485492 125 36 ; Align 485699 137 105 ; Align 485804 173 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 123 -> 213 Target range: 457144 -> 457411 124 : IleTyrValValAsnAlaTyrPheCysSerIleLeuPheLeuLeuLeuProPheThrP : 143 !!: !..!|||::!.!!|||! ! !!:!!:!::!!.!! ! !|||! !.!! !| MetIleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheP 457145 : ATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTC : 457202 144 : roIleLeuLeuAspIlePheIleProLeuAsnGluSerArgProArgValGlnMetTy : 162 ||||||||||||||||| ! :!!||||||||||||||||||||| !:!!:!:|| roIleLeuLeuAspIleValValProLeuAsnGluSerArgPro---CysGluLeuTy 457203 : CGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCC---TGTGAGTTATA : 457256 163 : rProAlaTyrTyrTyrIleGluAsnGluAlaAspTyrTyrTyrProIleLeuIlePhe : 181 |! !.!! ! |||.!!! :!! ! ! ! ||| :!! !|||:!! ! rLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHis 457257 : CCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCAC : 457313 182 : SerIleValSerLeuLeuThrAlaMetCysValPheIleAlaThrAspThrMetLeuI : 201 ! !|||..!!!!||||||! !||| !..!!!.! !|||!.!!!::!!:!:|||| IleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuI 457314 : ATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTA : 457373 202 : leTyrIleValGlnHisAlaCysGlyLeuLeuAlaLeu : 213 || ! !|||! !|||!.!|||||||||!!! !||| leThrAsnValLeuHisValCysGlyLeuPheLysLeu 457374 : TAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: AfOr106 123 213 . KQ414815.1 457144 457411 + 128 M 34 102 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457145 457411 128 + . gene_id 3 ; sequence AfOr106 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457145 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457145 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457145 457411 128 + . alignment_id 3 ; Query AfOr106 ; Align 457145 124 102 ; Align 457247 159 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 133 -> 214 Target range: 471573 -> 471813 134 : IleLeuPheLeuLeuLeuProPheThrProIleLeuLeuAspIlePheIleProLeuA : 153 ||| ! !:!!:!!||| !!.!.:!!|||:!!:!!|||||||||.!.|||||||||| IleThrSerValIleLeuSerMetSerProLeuIleLeuAspIleIleIleProLeuA 471574 : ATTACTAGTGTAATACTGTCCATGTCGCCTCTTATTCTCGATATTATAATACCTCTGA : 471631 154 : snGluSerArgProArgValGlnMetTyrProAlaTyrTyrTyrIleGluAsnGluAl : 172 || !|||||||||||| ! !:! .!!!:! !!!:!||| |||:!!! snThrSerArgProArgTyrPheProPhe---ThrPheAspPheIleProAsnGlnGl 471632 : ACACGTCACGTCCACGTTACTTTCCATTT---ACGTTCGATTTCATTCCCAATCAAGA : 471685 173 : aAspTyrTyrTyrProIleLeuIlePheSerIleValSerLeuLeuThrAlaMetCys : 191 !!!:|||!:!!! |||||| !||||||||| !:!!! !! !:!! !!.!:!:... uGluTyrPhe***ProIleThrIlePheSerGlyIleLeuCysIleCysGlyLeuAla 471686 : GGAATACTTCTAACCGATTACTATCTTTTCTGGCATATTGTGCATTTGTGGATTAGCA : 471742 192 : ValPheIleAlaThrAspThrMetLeuIleTyrIleValGlnHisAlaCysGlyLeuL : 211 !.!.!.|||::!!:!!!: !:!!|||!!: ! !||| !|||!.! !!||||||! AlaMetIleSerSerGluGlyLeuLeuMetMetAsnValLeuHisValArgGlyLeuT 471743 : GCAATGATAAGTAGCGAGGGTCTGCTTATGATGAATGTTTTACACGTACGTGGATTGT : 471802 212 : euAlaLeuAla : 214 ! !:!!||| yrAsnIleAla 471803 : ATAACATCGCT : 471813 vulgar: AfOr106 133 214 . KQ414815.1 471573 471813 + 126 M 29 87 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471574 471813 126 + . gene_id 4 ; sequence AfOr106 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471574 471813 . + . KQ414815.1 exonerate:protein2genome:local exon 471574 471813 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 471574 471813 126 + . alignment_id 4 ; Query AfOr106 ; Align 471574 134 87 ; Align 471661 164 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 123 -> 213 Target range: 475503 -> 475770 124 : IleTyrValValAsnAlaTyrPheCysSerIleLeuPheLeuLeuLeuProPheThrP : 143 ||| !..!||| !.!||| ! !.!! !.!.:!!||||||! !|||:!! IleValThrValLeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerS 475504 : attgtTACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGT : 475561 144 : roIleLeuLeuAspIlePheIleProLeuAsnGluSerArgProArgValGlnMetTy : 162 !!! :!!|||||| !!!.:!!|||||||||||||||||||||!!! !...:!! erLysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIl 475562 : CTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAt : 475618 163 : rProAlaTyrTyrTyrIleGluAsnGluAlaAspTyrTyrTyrProIleLeuIlePhe : 181 |||:::||| |||||| ! ! |||!:!|||! !! !:!!|||!:! eArgIleGluTyrPheIle---AsnGluGlnLysTyrPheTyrLeuSerValIleTyr 475619 : acgaatagaatatttcata---aacGAACAGAAATACTTTTATCTGAGCGTGATCTAT : 475672 182 : SerIleValSerLeuLeuThrAlaMetCysValPheIleAlaThrAspThrMetLeuI : 201 ..!! !|||!!!:!!||| ! ! !..!!:!:!!||||||!!:.!!!!:!!!! GlnThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheT 475673 : CAGACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTA : 475732 202 : leTyrIleValGlnHisAlaCysGlyLeuLeuAlaLeu : 213 ! :!!||||||..! ...|||... ::: hrMetTrpLeuGlnHisCysIleSerLeuPheGluIle 475733 : CCATGTGGTTGCAACATTGCATaagtttatttgaaatt : 475770 vulgar: AfOr106 123 213 . KQ414815.1 475503 475770 + 114 M 45 135 G 1 0 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475504 475770 114 + . gene_id 5 ; sequence AfOr106 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475504 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475504 475770 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 475504 475770 114 + . alignment_id 5 ; Query AfOr106 ; Align 475504 124 135 ; Align 475639 170 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 133 -> 213 Target range: 464600 -> 464840 134 : IleLeuPheLeuLeuLeuProPheThrProIleLeuLeuAspIlePheIleProLeuA : 153 :!:!!!.!!! !|||||| ! ! !||| !:!!||||||:!: !! ||||||| LeuPheIleCysLeuLeuGluValLeuProAspIleLeuAspValValAlaProLeuA 464601 : CTGTTCATCTGTTTACTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCA : 464658 154 : snGluSerArgProArgValGlnMetTyrProAlaTyrTyrTyrIleGluAsnGluAl : 172 ||||||||||| !!!.! ! ! :!: ! !!||| ! !:!!:!||| :!!...:! snGluSerArgSerHisGlnTyrLeuIleThrAlaGluPhePheIleThrAspSerSe 464659 : ATGAATCTCGTTCTCATCAATACTTAATTACCGCGGAATTTTTCATCACTGATAGTTC : 464715 173 : aAspTyrTyrTyrProIleLeuIlePheSerIleValSerLeuLeuThrAlaMetCys : 191 ! !!||| ! !! !! !:!! !!!! !:!!!!!|||:!!! !!.!:!: rProAsnTyrIleValThrCysValGlyThrAspIleThrLeuIleMetGlyValThr 464716 : GCCGAATTATATCGTAACTTGTGTTGGTACGGATATTACTCTTATCATGGGAGTCACG : 464772 192 : ValPheIleAlaThrAspThrMetLeuIleTyrIleValGlnHisAlaCysGlyLeuL : 211 ..!.!.||||||:!!!!:|||.!. !.!!! :!::!!|||||| !|||!.!:!!! ThrIleIleAlaSerGluThrPheThrPheLeuLeuLeuGlnHisIleCysAlaMetP 464773 : ACAATAATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAATGT : 464832 212 : euAlaLeu : 213 !! !:!! heLysIle 464833 : TCAAAATC : 464840 vulgar: AfOr106 133 213 . KQ414815.1 464600 464840 + 110 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464601 464840 110 + . gene_id 6 ; sequence AfOr106 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464601 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464601 464840 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464601 464840 110 + . alignment_id 6 ; Query AfOr106 ; Align 464601 134 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 146 -> 214 Target range: 485722 -> 485926 147 : IleLeuAspIleIleMetProLeuAsnValSerArgLysArgIleLeuLeuTyrProA : 166 ||||||||||||:!:!!:||||||||| !!!!||| !|||! :!!! ! !: IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 167 : laTyrPheTrpLeuAspAspGluLysTyrTyrValLeuLeuLeuGlyHisMetIleIl : 185 !! ! !!:::!!|||.!.:!!||||||!:! !! !:!! !!.!|||:!::!!:! erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 186 : eThrIleLeuMetIleCysPheIlePheCysAlaCysAspMetAsnTyrValTyrAla : 204 ! !:!!:!!!!: !....!.:!!!!. !::! :::::: ::: ! uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 205 : ValGlnHisAlaCysGlyLeuLeuAlaIle : 214 :!!||||||.!!|||||||||! !.!!||| IleGlnHisThrCysGlyLeuTyrThrIle 485895 : ATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: AfOr112_1 146 214 . KQ414815.1 485722 485926 + 113 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485926 113 + . gene_id 1 ; sequence AfOr112_1 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485926 113 + . alignment_id 1 ; Query AfOr112_1 ; Align 485723 147 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 142 -> 215 Target range: 448079 -> 448298 143 : MetValProProIleLeuAspIleIleMetProLeuAsnValSerArgLysArgIleL : 162 .!.||| ! ...|||||||||:::||||||:!!|||||||||! !::!!.! | PheValValHisPheLeuAspIleLeuMetProMetAsnValSerThrArgHisGluL 448080 : TTCGTGGTAcattttctcgatattttaATGCCAATGAACGTATCTACACGGCACGAGC : 448137 163 : euLeuTyrProAlaTyrPheTrpLeuAspAspGluLysTyrTyrValLeuLeuLeuGl : 181 ||! !!:!! ! ! ! ! !!::! !|||.!.!!:|||!:!!:! !! !:!!|||! euProPheLeuIleGlnCysPheCysAspGlnAspLysPhePheHisTyrIleLeuVa 448138 : TACCCTTCCTAATTCAATGTTTCTGTGATCAAGATAAATTCTTCCACTATATATTAGT : 448194 182 : yHisMetIleIleThrIleLeuMetIleCysPheIlePheCysAlaCysAspMetAsn : 200 ! !:!!|||:!! !! !:!!:!! ! ! !:!: ! ! ||| ! ! !!.! lPheLeuIleValLeuThrIleLeuGlyGlySerValValLeuAlaThrThrThrThr 448195 : TTTCTTGATCGTTCTCACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAACGACT : 448251 201 : TyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla : 215 |||:!! ! !||||||..!|||||||||!!! !|||||| TyrLeuIlePheSerGlnHisCysCysGlyLeuPheLysIleAla 448252 : TACTTGATATTCAGTCAACATTGTTGTGGATTGTTCAAAATTGCA : 448298 vulgar: AfOr112_1 142 215 . KQ414815.1 448079 448298 + 102 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448080 448298 102 + . gene_id 2 ; sequence AfOr112_1 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448080 448298 . + . KQ414815.1 exonerate:protein2genome:local exon 448080 448298 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448080 448298 102 + . alignment_id 2 ; Query AfOr112_1 ; Align 448080 143 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr131like_2 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 0 -> 51 Target range: 439271 -> 439424 1 : MetAspValPheAspLysHisTyrArgThrTyrHisIleValLeuLysIleIleGlyL : 20 ||||||||||||:!!|||!!.||||||||||||!.!:!!:!!|||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 439272 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGCTAGGAC : 439329 21 : euTrpProTyrAsnAsnSerValTyrAlaTrpIleGlnArgLeuLeuLeuLeuThrLe : 39 |||||||||||::!.!.|||:!!|||::! |||!!.|||:!!! !!!! !|||:! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 439330 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 439386 40 : uTyrLeuGlyAsnValIlePheGlnIleValSerLeu : 51 ! |||..! !:!!||||||:!!:!::!!..!:!! eMetLeuSerCysIleIlePheGluValMetGlnIle 439387 : TATGCTTTCGTGTATTATATTTGAGGTGATGCAAATA : 439424 vulgar: AfOr131like_2 0 51 . KQ414815.1 439271 439424 + 147 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439272 439424 147 + . gene_id 1 ; sequence AfOr131like_2 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 439272 439424 . + . KQ414815.1 exonerate:protein2genome:local exon 439272 439424 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 439272 439424 147 + . alignment_id 1 ; Query AfOr131like_2 ; Align 439272 1 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr131like_2 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 0 -> 51 Target range: 443381 -> 443534 1 : MetAspValPheAspLysHisTyrArgThrTyrHisIleValLeuLysIleIleGlyL : 20 ||||||||||||:!!|||!!.||||||||||||!.!:!!:!!|||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 443382 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGTTAGGAC : 443439 21 : euTrpProTyrAsnAsnSerValTyrAlaTrpIleGlnArgLeuLeuLeuLeuThrLe : 39 |||||||||||::!.!.|||:!!|||::! |||!!.|||:!!! !!!! !|||:! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 443440 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 443496 40 : uTyrLeuGlyAsnValIlePheGlnIleValSerLeu : 51 ! |||..! !:!!||||||:!!:!::!!..!:!! eIleLeuSerCysIleIlePheGluValMetGlnIle 443497 : TATACTTTCGTGTATTATATTTGAGGTGATGCAAATA : 443534 vulgar: AfOr131like_2 0 51 . KQ414815.1 443381 443534 + 147 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 443382 443534 147 + . gene_id 2 ; sequence AfOr131like_2 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 443382 443534 . + . KQ414815.1 exonerate:protein2genome:local exon 443382 443534 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 443382 443534 147 + . alignment_id 2 ; Query AfOr131like_2 ; Align 443382 1 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr131like_2 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 280 -> 331 Target range: 441443 -> 441596 281 : LeuHisArgLeuValAsnAlaIleThrIleLysLysAspGlnLeuGluIleLeuIleS : 300 :!! !:!:!!|||!!.||||||..!! !! !!!.||||||||||||||||||:!!| ValSerGlnIleValLysAlaIleValThrMetAsnAspGlnLeuGluIleLeuLeuS 441444 : GTTTCACAGATAGTAAAAGCAATAGTGACAATGAATGATCAATTGGAGATACTGTTAA : 441501 301 : erLeuIleIlePheAlaAsnHisLeuMetIleMetPheLeuCysAsnHisSerGlyGl : 319 ||:!!!!:||| !!::!||||||:!!:!!.!!:!!|||!!! !|||:!!:!!||||| erIleMetIleValSerAsnHisIleValPheLeuPhePheAsnAsnTyrAlaGlyGl 441502 : GTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGGACA : 441558 320 : nIleLeuIleAspAsnSerGluGluPhePheHisGlu : 331 |:!!||||||:!!:!!||||||||| !!||| !||| nLeuLeuIleAsnHisSerGluGluValPheValGlu 441559 : GTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA : 441596 vulgar: AfOr131like_2 280 331 . KQ414815.1 441443 441596 + 129 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441444 441596 129 + . gene_id 3 ; sequence AfOr131like_2 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441444 441596 . + . KQ414815.1 exonerate:protein2genome:local exon 441444 441596 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441444 441596 129 + . alignment_id 3 ; Query AfOr131like_2 ; Align 441444 281 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr131like_2 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 280 -> 331 Target range: 445555 -> 445708 281 : LeuHisArgLeuValAsnAlaIleThrIleLysLysAspGlnLeuGluIleLeuIleS : 300 :!! !:!:!!|||!!.||||||..!! !! !!!.||||||||||||||||||:!!| ValSerGlnIleValLysAlaIleValThrMetAsnAspGlnLeuGluIleLeuLeuS 445556 : GTTTCACAGATAGTAAAAGCAATAGTGACAATGAATGATCAATTGGAGATACTGTTAA : 445613 301 : erLeuIleIlePheAlaAsnHisLeuMetIleMetPheLeuCysAsnHisSerGlyGl : 319 ||:!!!!:||| !!::!||||||:!!:!!.!!:!!|||!!! !|||:!!:!!||||| erIleMetIleValSerAsnHisIleValPheLeuPhePheAsnAsnTyrAlaGlyGl 445614 : GTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGGACA : 445670 320 : nIleLeuIleAspAsnSerGluGluPhePheHisGlu : 331 |:!!||||||:!!:!!||||||||| !!||| !||| nLeuLeuIleAsnHisSerGluGluValPheValGlu 445671 : GTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA : 445708 vulgar: AfOr131like_2 280 331 . KQ414815.1 445555 445708 + 129 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445556 445708 129 + . gene_id 4 ; sequence AfOr131like_2 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445556 445708 . + . KQ414815.1 exonerate:protein2genome:local exon 445556 445708 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445556 445708 129 + . alignment_id 4 ; Query AfOr131like_2 ; Align 445556 281 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr131like_2 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 132 -> 215 Target range: 440462 -> 440711 133 : IleThrLeuPheAsnIleSerLeuLeuTyrPheIleThrMetAsnPheIleMetProV : 152 ||||||:!! ! ! !!!||||||||| :!!:!!|||:!!.!.:!!:!:|||: IleThrIleThrValThrThrLeuLeuTyrProValSerMetAspLeuLeuValProL 440463 : ATCACAATTACCGTGACGACATTATTATACCCAGTATCAATGGATCTGTTAGTACCAT : 440520 153 : alAsnGlnTyrGlyIleLeuIleLeuArgTyrIleThrLeuPheSerValAsnArgAs : 171 !!|||:!!! ! !! !! ! !||| ! |||... :::... !|||!:!! euAsnLysSerArgProArgTyrLeuGlyTyrPhePheIleLeuProSerAsnGlnIl 440521 : TGAACAAATCCAGACCTCGTTATCTTGGctacttttttattcttccctCTAATCAAAT : 440577 172 : nIleTyrPheTyrIleLeuCysLeuAspValMetPheValValThrPheGlyLeuLeu : 190 |||.!! !!.!!:!! !!! !!! !! !!.||| ! ! ! ||||||||| eGlnTyrIleAspPheMetThrPheTyrGlyThrLeuValProPheValGlyLeuLeu 440578 : ACAGTATATTGATTTTATGACATTTTATGGGACATTAGTTCCCTTTGTGGGATTATTA : 440634 191 : SerIleIleCysThrGluSerIleIleIleValTyrSerTyrHisThrGlyMetLeuP : 210 !!!:!!! !||||||||||||:!!:!!! !:!! !:!! :!!..!.!!! |||! ThrValThrCysThrGluSerLeuLeuSerIleIleAlaMetTyrValSerSerLeuT 440635 : ACTGTAACATGCACGGAATCGCTTCTTAGTATTATCGCAATGTATGTGAGCAGTTTAT : 440694 211 : heLysIleIleSerHis : 215 :!||||||! !.!!:!! yrLysIleThrGlyTyr 440695 : ATAAGATTACTGGGTAC : 440711 vulgar: AfOr131like_2 132 215 . KQ414815.1 440462 440711 + 101 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 440463 440711 101 + . gene_id 5 ; sequence AfOr131like_2 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 440463 440711 . + . KQ414815.1 exonerate:protein2genome:local exon 440463 440711 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 440463 440711 101 + . alignment_id 5 ; Query AfOr131like_2 ; Align 440463 133 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr122like_3 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 330 -> 390 Target range: 128557 -> 128303 331 : HisSerSerThrTrpTyrArgIleProLeuLysAlaGlnLysLeuLeuLeuPheMetI : 350 :!!!!!:!!! !||||||!:! !|||:::|||:::||||||:::|||||||||:!:! TyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheLeuM 128557 : TATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCCTCA : 128500 351 : leValArgSerSerMetGlyCysGluLeuCysLeuSerGlyLeuPheThrProSerTy : 369 !: !|||! !! ! !|||..!||| |||!.!..!||| !!.!! !!.!! ! etHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGlyAs 128499 : TGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGGTAA : 128443 370 : rAlaGlyPheMetSer >>>> Target Intron 1 >>>> MetIleSerSerS : 379 !! ! !!:! !!! 74 bp |||:!:..!!!!. nGluLeuTyrAlaThr++ ++MetValGlnThrG 128442 : CGAGTTGTACGCTACCgt.........................agaTGGTGCAGACTG : 128339 380 : erPheSerTyrCysAlaValIleTyrSerLeuGln : 390 !!|||||||||! !.!!|||:!!|||||||||||| lyPheSerTyrPheThrValLeuTyrSerLeuGln 128338 : GTTTCTCCTACTTTACGGTTCTCTACTCGTTGCAA : 128304 vulgar: AfOr122like_3 330 390 . KQ414817.1 128557 128303 - 106 M 44 132 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128304 128557 106 - . gene_id 1 ; sequence AfOr122like_3 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128557 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128557 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128304 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128304 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128304 128557 106 - . alignment_id 1 ; Query AfOr122like_3 ; Align 128558 331 132 ; Align 128352 375 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr122like_1 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 329 -> 389 Target range: 128557 -> 128303 330 : TyrAlaSerThrTrpTyrArgIleProLeuLysAlaGlnLysLeuLeuLeuPheMetI : 349 |||..!:!!! !||||||!:! !|||:::|||:::||||||:::|||||||||:!:! TyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheLeuM 128557 : TATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCCTCA : 128500 350 : leLeuArgSerSerMetGlyCysGluLeuGlyLeuSerGlyLeuPheThrProSerTy : 368 !:! !|||! !! ! !|||..!||| !|||!.!..!||| !!.!! !!.!! ! etHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGlyAs 128499 : TGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGGTAA : 128443 369 : rAlaGlyPheThrSer >>>> Target Intron 1 >>>> MetMetSerSerS : 378 !! ! !!:!.!!!!! 74 bp |||:!!..!!!!. nGluLeuTyrAlaThr++ ++MetValGlnThrG 128442 : CGAGTTGTACGCTACCgt.........................agaTGGTGCAGACTG : 128339 379 : erPheSerTyrCysAlaValIleTyrSerIleGln : 389 !!|||||||||! !.!!|||:!!||||||:!:||| lyPheSerTyrPheThrValLeuTyrSerLeuGln 128338 : GTTTCTCCTACTTTACGGTTCTCTACTCGTTGCAA : 128304 vulgar: AfOr122like_1 329 389 . KQ414817.1 128557 128303 - 110 M 44 132 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128304 128557 110 - . gene_id 1 ; sequence AfOr122like_1 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128557 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128557 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128304 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128304 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128304 128557 110 - . alignment_id 1 ; Query AfOr122like_1 ; Align 128558 330 132 ; Align 128352 374 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr105 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 834 Query range: 6 -> 414 Target range: 1226426 -> 1222002 7 : IleProIlePheTyrValLeuGlnLysAsnAsnGluGlnGluTyrAsnAlaPheAs : 25 ||| !!!!:!:!! |||!!!||||||!!.!:!:!!|||! ||||||!.!|||.. IleAlaMetTyrSerValPheGlnLysLysSerLysGlnAlaTyrAsnValPheSe 1226426 : ATTGCAATGTATTCAGTGTTTCAGAAGAAGAGCAAGCAAGCCTATAACGTATTCAG : 1226372 26 : pIleAlaTyrTyrLysThrLeuLysLeuTyrLeuThrIleCysGlyIleAsnProT : 44 !!!: !|||||||||:!!:!!||| !|||:!!!.!||| !||||||||||||| rMetIleTyrTyrLysSerMetLysSerTyrMetAsnIleLeuGlyIleAsnProT 1226371 : TATGATCTACTATAAATCAATGAAAAGTTATATGAACATCCTTGGCATAAATCCGT : 1226315 45 : yrGlnAsnAsnAsnIleSerIleIleIleIleIleMetIleIleSerValCysMet : 62 |||||:!!!!.... !.!!||| !:!: !! !!!:! !:!!|||:!! yrGlnAspLysArgAlaGlyIleAlaLeuGlnSerThrAlaMetPheLeuCysVal 1226314 : ATCAAGATAAACGAGCTGGTATTGCCCTGCAGTCCACTGCAATGTTCCTTTGCGTG : 1226261 63 : SerPheLeuCysProThr >>>> Target Intron 1 >>>> SerIleGln : 71 ||| ! :!! !!|||! ! 163 bp ! !:!!:!! SerValMetSerProMet++ ++PheLeuLys 1226260 : TCCGTAATGAGTCCAATGgt.........................agTTTCTAAAG : 1226071 72 : LeuTrpGluAlaIleSerAsnLysAspPheAspAsnIleIleGlnAsnIleProGl : 90 :!!!::! !||| !!.!.||||||||||||...:!!!!:||| :!!|||.! IleTyrValAlaGlnArgGluLysAspPheAspGlyValMetGlnValLeuProAs 1226070 : ATCTACGTGGCCCAGCGCGAGAAGGATTTCGATGGGGTCATGCAGGTACTCCCGAA : 1226014 91 : nValIleThrValIleIleSerMetIleLysIleLeuAsnIleTyrSerAsnLysM : 109 .:!!|||.!! !! ! !:!!:!::!!|||:!!:!!|||||| !! !|||||| nIleIleAlaGlnThrGlyAlaLeuValLysValMetAsnIleArgIleAsnLysA 1226013 : CATTATCGCCCAGACTGGCGCCCTCGTTAAAGTAATGAACATCCGTATCAACAAAG : 1225957 110 : etGlnPheLysLysLeuPheTyrSerLeuAlaGlnAspTrpLysSerLeuGluSer : 127 ... ...||| :::|||::: |||...::: ! laAsnVal------CysIleTyrIleValAlaLysLysGluLysGlyIlePheVal 1225956 : Cgaacgta------tgtatatacattgttgcaaaaaaagaaaagggaatcTTCGTT : 1225909 128 : LysGluGluLeuIleMetLeuAspLysPheThrGlnTyrGlySerLysLeuAlaLe : 146 |||:!!:!!:!!|||:!!!!::::.!!!::...::: ::: ! CysGluLysIleValMetIleGluArgIleSerSerPheGluAsnTyrSerIleSe 1225908 : TGTGAAAAAATCGTAATGATCGAACGTATTAgtagtttcgaaaattattcgatcTC : 1225852 147 : uLeuTyrArg{L} >>>> Target Intron 2 >>>> {ys}SerLeuLeuT : 154 !! !|||..!{ } 1549 bp {! }||||||! !! rTrpTyrGlu{A}-+ ++{sp}SerLeuTrpI 1225851 : ATGGTACGAA{G}at.........................ag{ac}tCGTTGTGGA : 1224279 155 : hrPheLeuValIlePheLeuSerLeuProLeuCysAsnProIleLeuAspIleIle : 172 ! !!|||:!!:!!!:!:!!|||!!!|||||| ||||||:!!||||||:!!:!! leValLeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAspValVal 1224278 : TAGTTCTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTT : 1224225 173 : LeuProLeuAsnGluThrArgProArgGlnAsnIlePheAsnValAsnTyrIleIl : 191 !||||||||||||||||||||||||::! !:!:.!! |||!:!||||||.! AlaProLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePh 1224224 : GCGCCGTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATT : 1224168 192 : eLeuAspAsnTyrGluTyrPheTyrIleValTyrValHisLeuSerCysSerAlaA : 210 !:!!|||.!.||||||:!!||||||! !||| !! !!||||||! ! !|||!.! eIleAspGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValI 1224167 : CATAGACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGA : 1224111 211 : laIleIleValIleIleIleIleSerValAspSerLeuTyrIleSerIleIleTyr : 228 ! ! !! !!!:!!:||||||:!!||||||! !|||||||||!!!||||||!:! leSerCysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePhe 1224110 : TTTCCTGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTT : 1224057 229 : HisAlaCysGlyLeuPheAlaAlaCys{Gl} >>>> Target Intron 3 >> : 238 ||| !|||||||||||||||!.!|||{||} 104 bp HisLeuCysGlyLeuPheAlaValCys{Gl}++ 1224056 : CACCTTTGCGGATTGTTCGCAGTGTGT{GG}gt....................... : 1224023 239 : >> {y}TyrGlnIleGlnLysLeuThrLysIleHisThrIleGluLysAsnGlyP : 255 {|}:!!!:!|||||| ! !|||:!!!!::!!! !:!:.!.|||:!!! ! ++{y}HisArgIleGlnValThrThrGluMetAsnIleValAsnLysAspGluT 1224022 : ..ag{a}CATCGAATTCAAGTAACAACAGAGATGAACATCGTGAACAAAGACGAAA : 1223872 256 : roAsnIleSerSerIleGluTyrGluGluPheLysGlnCysValIleMetHisTyr : 273 !!!!.! !|||..! !! |||:!!:!!|||||||||||||||! !||||||:!! hrLysLysSerGluAlaGlyTyrLysGlnPheLysGlnCysValThrMetHisHis 1223871 : CCAAGAAAAGCGAGGCTGGTTACAAACAGTTCAAACAATGTGTGACAATGCATCAC : 1223818 274 : LysCysLeu{Gl} >>>> Target Intron 4 >>>> {n}LeuTyrAspVa : 281 :!!..!|||{||} 343 bp {|}! !! !.!.:! GluAlaLeu{Gl}++ ++{n}TyrCysGlnIl 1223817 : GAAGCCCTT{CA}gt.........................ag{A}TACTGCCAGAT : 1223451 282 : lLeuGluLysCysCysArgAsnLeuTyrLeuIleGlnMetGlyLeuAsnIleMetI : 300 !||||||!:! !! !!!:!:!!:!!||||||||||||:!:||||||!:!:!:.!.| eLeuGluArgSerSerGlnHisMetTyrLeuIleGlnValGlyLeuSerValPheI 1223450 : TCTGGAAAGAAGTAGCCAACATATGTACCTGATTCAAGTAGGATTAAGCGTGTTCA : 1223394 301 : leIleSerValThrCysValGlu >>>> Target Intron 5 >>>> IleV : 309 ||||||||||||||..!!.!! ! 656 bp !: leIleSerValThrAlaAlaAla++ ++CysI 1223393 : TCATCAGCGTGACGGCTGCCGCAgt.........................agTGCA : 1222711 310 : alValPheLeuAspArgProGluGluAlaIleArgAlaIleIleTyrValMetAla : 327 !!:!! !:!!|||||||||!!:||| !|||||| ! !!:!:!|||:!:||| leMetAsnIleAspArgProAspGluLeuIleArgLeuAlaMetPheValValAla 1222710 : TTATGAACATCGACCGACCTGACGAACTCATCAGGCTTGCGATGTTTGTCGTAGct : 1222657 328 : GlnGlnPheHisLeuTyrAlaIleSerLeuProGlyGluMetLeuLeuAsnGlnSe : 346 |||:::||||||||| !:!!||||||||||||:!!|||||||||:!!!!.|| GlnLysPheHisLeuLeuIleLeuSerLeuProGlyGlnMetLeuLeuAspHisSe 1222656 : cagaaatttcatttgctcATCCTTAGTTTACCTGGGCAAATGTTGTTAGATCATAG : 1222600 347 : rSerLysLeuAlaAspLys{Il} >>>> Target Intron 6 >>>> {e}T : 354 |! ! !|||||||||! !{||} 71 bp {|}| rLeuGlyLeuAlaAspIle{Il}++ ++{e}T 1222599 : TTTAGGATTGGCCGATATA{AT}gt.........................ag{T}T : 1222505 355 : yrAspSerGluTrpTyrLysIleProMetLysValGlnLysValLeuHisIleMet : 372 ||! !|||:!!||||||:!!:!!|||:!:|||! !||||||:!!:!!:!!! ||| yrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTyrThrMet 1222504 : ACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTACACGATG : 1222451 373 : GlnIleArgSerAsnLysProCysIleLeuThrAlaAlaGlyLeuTyrGluMetLy : 391 |||!!:||||||! ::!||||||||||||||||||!.!|||:!!:!!||||||!! GlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisGluMetAs 1222450 : CAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATGAGATGAA : 1222394 392 : sIleGluSerPheGlyIle >>>> Target Intron 7 >>>> ThrIleLy : 400 .|||||||||||||||||| 320 bp .!!||||| nIleGluSerPheGlyIle++ ++AlaIleLy 1222393 : CATCGAGAGTTTCGGAATAgt.........................aggCTATTAA : 1222047 401 : sThrCysMetSerTyrPheMetMetPheLeuSerLeuArgGlu : 414 |.!!|||||||||||||||||||||||||||||||||!:!||| sAlaCysMetSerTyrPheMetMetPheLeuSerLeuLysGlu 1222046 : AGCGTGCATGTCCTATTTCATGATGTTCCTGTCGTTGAAAGAA : 1222003 vulgar: AfOr105 6 414 . KQ414851.1 1226426 1222002 - 834 M 62 186 5 0 2 I 0 159 3 0 2 M 43 129 G 2 0 M 36 108 S 0 1 5 0 2 I 0 1545 3 0 2 S 1 2 M 87 261 S 0 2 5 0 2 I 0 100 3 0 2 S 1 1 M 38 114 S 0 2 5 0 2 I 0 339 3 0 2 S 1 1 M 30 90 5 0 2 I 0 652 3 0 2 M 45 135 S 0 2 5 0 2 I 0 67 3 0 2 S 1 1 M 44 132 5 0 2 I 0 316 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222003 1226426 834 - . gene_id 1 ; sequence AfOr105 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1226241 1226426 . - . KQ414851.1 exonerate:protein2genome:local exon 1226241 1226426 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1226239 1226240 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1226078 1226240 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1226078 1226079 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1225840 1226077 . - . KQ414851.1 exonerate:protein2genome:local exon 1225840 1226077 . - . insertions 0 ; deletions 2 KQ414851.1 exonerate:protein2genome:local splice5 1225838 1225839 . - . intron_id 2 ; splice_site "AT" KQ414851.1 exonerate:protein2genome:local intron 1224291 1225839 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1224291 1224292 . - . intron_id 1 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1224026 1224290 . - . KQ414851.1 exonerate:protein2genome:local exon 1224026 1224290 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1224024 1224025 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1223922 1224025 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1223922 1223923 . - . intron_id 2 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1223805 1223921 . - . KQ414851.1 exonerate:protein2genome:local exon 1223805 1223921 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1223803 1223804 . - . intron_id 4 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1223462 1223804 . - . intron_id 4 KQ414851.1 exonerate:protein2genome:local splice3 1223462 1223463 . - . intron_id 3 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1223371 1223461 . - . KQ414851.1 exonerate:protein2genome:local exon 1223371 1223461 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1223369 1223370 . - . intron_id 5 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222715 1223370 . - . intron_id 5 KQ414851.1 exonerate:protein2genome:local splice3 1222715 1222716 . - . intron_id 4 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222578 1222714 . - . KQ414851.1 exonerate:protein2genome:local exon 1222578 1222714 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1222576 1222577 . - . intron_id 6 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222507 1222577 . - . intron_id 6 KQ414851.1 exonerate:protein2genome:local splice3 1222507 1222508 . - . intron_id 5 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222374 1222506 . - . KQ414851.1 exonerate:protein2genome:local exon 1222374 1222506 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1222372 1222373 . - . intron_id 7 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222054 1222373 . - . intron_id 7 KQ414851.1 exonerate:protein2genome:local splice3 1222054 1222055 . - . intron_id 6 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1222003 1222053 . - . KQ414851.1 exonerate:protein2genome:local exon 1222003 1222053 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222003 1226426 834 - . alignment_id 1 ; Query AfOr105 ; Align 1226427 7 186 ; Align 1226078 69 129 ; Align 1225949 114 108 ; Align 1224289 151 261 ; Align 1223921 239 114 ; Align 1223461 278 90 ; Align 1222715 308 135 ; Align 1222506 354 132 ; Align 1222054 398 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr105 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 643 Query range: 69 -> 414 Target range: 1234767 -> 1233123 70 : IleGlnLeuTrpGluAlaIleSerAsnLysAspPheAspAsnIleIleGlnAsnIl : 88 |||:!!:!!!::! ! !:!!!!!.!.|||:!!.!.||| :!:|||:!! !:! IleGluIleTyrValGlnLeuCysGluLysAsnMetAspAlaValIleGluCysLe 1234767 : ATCGAGATATATGTACAACTTTGTGAGAAGAATATGGACGCAGTGATCGAGTGTTT : 1234713 89 : eProGlnValIleThrValIleIleSerMetIleLysIleLeuAsnIleTyrSerA : 107 :|||.!.! !|||.!!!.! ! !|||:!!:!:|||:!:||||||:!!|||! !| uProAsnGlyIleAlaAlaAlaThrSerValValLysLeuLeuAsnValTyrLeuA 1234712 : GCCGAATGGTATCGCAGCCGCGACCAGCGTGGTGAAATTGTTGAACGTTTACTTAA : 1234656 108 : snLysMetGlnPheLysLysLeuPheTyrSerLeuAlaGlnAspTrpLysSerLeu : 125 ||!:! .!. ! ::: !!!||| !! ! ! !..!! !!::...! !||| snArgGluAsnValArgAlaPhePheIleIleGluAsnMetValPheSerTyrLeu 1234655 : ACAGGGAAAATGTACGTGCCTTCTTTATTATAGAAAACATGGTTTTCTCTTATTTA : 1234602 126 : GluSerLysGluGluLeuIleMetLeuAspLysPheThrGlnTyrGlySerLysLe : 144 :!!..!..! !!:!!! !:!!!!:||| ||| ::: ..! :! GlnGlnSer***LysArgValIleLeu---***PheGlnLysMetTyrAspLeuVa 1234601 : CAACAATCGTAAAAACGTGTCATATTa---tagtttcaaaaaatgtatgaTCTTGT : 1234548 145 : uAlaLeuLeuTyrArgLys >>>> Target Intron 1 >>>> SerLeuLe : 153 !.!! ! !!::..!:!! 204 bp !!!||||| lThrArgGluTrpGluGln-+ +-ThrLeuLe 1234547 : GACAAGAGAGTGGGAGCAGtt.........................atACATTACT : 1234317 154 : uThrPheLeuValIlePheLeuSerLeuProLeuCysAsnProIleLeuAspIleI : 172 |:!!|||:!!|||:!!|||||| !:!!|||||| ! !|||.!!||||||:!!: uSerPheMetValValPheLeuLeuValProLeuValPheProPheLeuAspValV 1234316 : GTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGTCG : 1234260 173 : leLeuProLeuAsnGluThrArgProArgGlnAsnIlePheAsnValAsnTyrIle : 190 !!||||||||||||||||||||||||||||||.!. !|||!..|||||||||:!! alLeuProLeuAsnGluThrArgProArgGlnGlnGlyPheArgValAsnTyrLeu 1234259 : TCCTTCCGTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTA : 1234206 191 : IleLeuAspAsnTyrGluTyrPheTyrIleValTyrValHisLeuSerCysSerAl : 209 !!!!|||.!. !!:||||||!:!! !|||||| !!!!.|||:!!!! .!!|| TyrPheAspGluAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAl 1234205 : TATTTCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGC : 1234149 210 : aAlaIleIleValIleIleIleIleSerValAspSerLeuTyrIleSerIleIleT : 228 |!.!:!!:!!|||!!:|||||||||!!!|||||||||||||||!!:! !||||||: aValValValValMetIleIleIleThrValAspSerLeuTyrMetIleIleIleH 1234148 : AGTCGTTGTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGATAATAATTC : 1234092 229 : yrHisAlaCysGlyLeuPheAlaAlaCysGlyTyrGlnIleGlnLysLeuThrLys : 246 !!|||||| !!|||:!!||||||!.!||||||!! ..! !!:! ! ! ! !||| isHisAlaSerGlyMetPheAlaValCysGly***Met***ArgTyrGlnGlyLys 1234091 : ACCATGCCAGCGGAATGTTCGCCGTGTGCGGGTAAATGTAACGATATCAAGGAAAA : 1234038 247 : <->IleHisThrIleGluLysAsnGlyProAsnIleSerSerIleGluTyrGluGl : 264 :!!:!!! !||| !|||||| !||||||..!! !|||.!. !! HisLeuTyrIleIlePhe***AsnGlyTrpAsnIleGlnTyrIleHisLeuLeuAs 1234037 : CATTTATACATCATTTTTTGAAACGGTTGGAATATTCAGTACATTCATCTGCTTGA : 1233981 265 : uPheLysGlnCysValIleMetHisTyrLys{Cy} >>>> Target Intron : 275 :!!.:!!! ! ! !! ! !!!:!{ } 180 bp pLeuGlnLeuProSerGluAsnSerAsnArg{Il}-+ 1233980 : TTTGCAGCTACCAAGTGAAAACAGCAACAGA{AT}at................... : 1233944 276 : 2 >>>> {s}LeuGlnLeuTyrAspValLeuGluLysCysCysArgAsnLeuTyr : 290 {!}! !::!!!!||||||:!!|||.!.:!! !! !!|||||| !||| +-{e}SerArgPheTyrAspIleLeuAsnGluSerSerArgAsnSerTyr 1233943 : ......at{T}TCCAGGTTTTACGATATTCTAAACGAGAGCAGTCGAAATAGCTAC : 1233723 291 : LeuIleGlnMetGlyLeuAsnIleMetIleIleSerValThrCysValGlu >>> : 308 |||||||||:!:|||||||||!!:||| !||||||||||||..!|||:!! LeuIleGlnValGlyLeuAsnMetMetGlyIleSerValThrAlaValGln+- 1233722 : TTGATTCAGGTTGGATTGAACATGATGGGCATTAGCGTGACCGCTGTCCAGgc... : 1233667 309 : > Target Intron 3 >>>> IleValValPheLeuAspArgProGluGluAl : 318 80 bp ! !|||:!! ||||||||||||! !||||| ++ThrValLeuThrLeuAspArgProAlaGluAl 1233666 : ......................agACAGTCCTCACACTGGACAGGCCGGCAGAAGC : 1233559 319 : aIleArgAlaIleIleTyrValMetAlaGlnGlnPheHisLeuTyrAlaIleSerL : 337 |:!!|||..! !:!:!:!:!!:!:|||:!!||||||||||||!:! !||||||| aLeuArgCysAlaValPheLeuValAlaGluGlnPheHisLeuPheIleIleSerL 1233558 : TCTTAGATGTGCTGTGTTCCTTGTAGCGGAGCAATTTCATTTGTTCATCATTAGCT : 1233502 338 : euProGlyGluMetLeuLeuAsnGlnSerSerLysLeuAlaAspLys{Il} >>> : 353 ||||||||:!!! |||:!!:!!!!.!!!!!!||||||:!! ! ! {||} euProGlyGlnThrLeuValAspHisCysThrLysLeuSerLysAsp{Il}++ 1233501 : TACCTGGACAGACACTCGTGGATCATTGTACGAAACTATCGAAGGAT{AT}gt... : 1233450 354 : > Target Intron 4 >>>> {e}TyrAspSerGluTrpTyrLysIleProMe : 363 70 bp {|}|||..!||| !|||||||||:!!||| ++{e}TyrSerSerThrTrpTyrLysValProAl 1233449 : ......................ag{A}TACTCTTCCACGTGGTATAAAGTACCGGC : 1233354 364 : tLysValGlnLysValLeuHisIleMetGlnIleArgSerAsnLysProCysIleL : 382 ||| !!|||::!|||:!!:!!! ||||||||||||:!! |||||||||:!!| aLysPheGlnArgValIleTyrThrMetGlnIleArgAlaLeuLysProCysValL 1233353 : AAAATTTCAGCGAGTAATTTACACGATGCAAATAAGGGCTCTAAAGCCGTGTGTTT : 1233297 383 : euThrAlaAlaGlyLeuTyrGluMetLysIleGluSerPheGlyIle >>>> Ta : 398 ||||||||!.!|||||||||||||||!!.!!:|||!:!|||!.!! ! euThrAlaGlyGlyLeuTyrGluMetAsnMetGluAsnPheAlaAsn++ 1233296 : TGACTGCAGGTGGATTGTATGAAATGAACATGGAGAACTTTGCAAACgt....... : 1233247 399 : rget Intron 5 >>>> ThrIleLysThrCysMetSerTyrPheMetMetPhe : 409 75 bp |||.!!|||||||||||||||||||||! |||.!. ++ThrPheLysThrCysMetSerTyrPheThrMetLeu 1233246 : ..................agaCATTCAAAACGTGCATGTCATACTTCACAATGCTG : 1233141 410 : LeuSerLeuArgGlu : 414 :!!|||||||||||| MetSerLeuArgGlu 1233140 : ATGTCACTTAGAGAA : 1233124 vulgar: AfOr105 69 414 . KQ414851.1 1234767 1233123 - 643 M 65 195 G 1 0 M 15 45 5 0 2 I 0 200 3 0 2 M 96 288 G 0 3 M 28 84 S 0 2 5 0 2 I 0 176 3 0 2 S 1 1 M 32 96 5 0 2 I 0 76 3 0 2 M 45 135 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 44 132 5 0 2 I 0 71 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233124 1234767 643 - . gene_id 2 ; sequence AfOr105 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1234528 1234767 . - . KQ414851.1 exonerate:protein2genome:local exon 1234528 1234767 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local splice5 1234526 1234527 . - . intron_id 1 ; splice_site "TT" KQ414851.1 exonerate:protein2genome:local intron 1234324 1234527 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1234324 1234325 . - . intron_id 0 ; splice_site "AT" KQ414851.1 exonerate:protein2genome:local cds 1233947 1234323 . - . KQ414851.1 exonerate:protein2genome:local exon 1233947 1234323 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233945 1233946 . - . intron_id 2 ; splice_site "AT" KQ414851.1 exonerate:protein2genome:local intron 1233767 1233946 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1233767 1233768 . - . intron_id 1 ; splice_site "AT" KQ414851.1 exonerate:protein2genome:local cds 1233670 1233766 . - . KQ414851.1 exonerate:protein2genome:local exon 1233670 1233766 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233668 1233669 . - . intron_id 3 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1233590 1233669 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1233590 1233591 . - . intron_id 2 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233453 1233589 . - . KQ414851.1 exonerate:protein2genome:local exon 1233453 1233589 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233451 1233452 . - . intron_id 4 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233383 1233452 . - . intron_id 4 KQ414851.1 exonerate:protein2genome:local splice3 1233383 1233384 . - . intron_id 3 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233250 1233382 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233382 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 5 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 5 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 4 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233124 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233124 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233124 1234767 643 - . alignment_id 2 ; Query AfOr105 ; Align 1234768 70 195 ; Align 1234573 136 45 ; Align 1234324 151 288 ; Align 1234033 247 84 ; Align 1233766 276 96 ; Align 1233590 308 135 ; Align 1233382 354 132 ; Align 1233175 398 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr105 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 292 Query range: 69 -> 238 Target range: 1229932 -> 1229224 70 : IleGlnLeuTrpGluAlaIleSerAsnLysAspPheAspAsnIleIleGlnAsnIl : 88 |||:!!:!!!::! ! !:!: !!!!.|||:!!.!.|||:!!!!:!!::!!!:!.! IleGluMetTyrValGlnLeuArgLysLysAsnMetAspAspMetMetGluSerPh 1229932 : ATCGAGATGTATGTGCAATTGCGTAAGAAGAATATGGACGATATGATGGAGAGTTT : 1229878 89 : eProGlnValIleThrValIleIleSerMetIleLysIleLeuAsnIleTyrSerA : 107 ! !!.!...!|||.!!!.! ! !|||:!!:!:|||:!:||||||:!!|||! !| eAlaAsnThrIleAlaAlaAlaThrSerLeuValLysLeuLeuAsnValTyrLeuA 1229877 : TGCGAATACTATTGCTGCCGCGACCAGCCTGGTGAAATTGTTGAACGTTTACTTAA : 1229821 108 : snLysMetGlnPheLysLysLeuPheTyrSerLeuAlaGlnAspTrpLysSerLeu : 125 ||!:! .!. ! ::: !!!||| !! ! ! !..!! !!::...! !||| snArgGluAsnValArgAlaPhePheIleIleGluAsnMetValPheSerTyrLeu 1229820 : ACAGGGAAAATGTACGTGCCTTCTTTATTATAGAAAACATGGTTTTCTCTTATTTA : 1229767 126 : GluSerLysGluGluLeuIleMetLeuAspLysPheThrGlnTyrGlySerLysLe : 144 :!!..!..! !!:!!! !:!!!!:||| ||| ::: ::: :! GlnGlnSer***LysArgValIleLeu---***PheArgLysMetTyrAsnLeuVa 1229766 : CAACAATCGTAAAAACGTGTCATATTA---TagtttagaaaaatgtataatctCGT : 1229713 145 : uAlaLeuLeuTyrArgLys >>>> Target Intron 1 >>>> SerLeuLe : 153 !.!!:!! !!::..!:!! 204 bp :!!||||| lThrIleGluTrpGluGln-+ +-AlaLeuLe 1229712 : GACAATAGAGTGGGAGCAGtt.........................atGCTTTACT : 1229482 154 : uThrPheLeuValIlePheLeuSerLeuProLeuCysAsnProIleLeuAspIleI : 172 | ! :!! !:!!|||||| !:!!||||||! !..!||| !|||||||||: uPheAlaMetCysValPheLeuLeuValProLeuPheGlyProAlaLeuAspIleV 1229481 : CTTCGCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCG : 1229425 173 : leLeuProLeuAsnGluThrArgProArgGlnAsnIlePheAsnValAsnTyrIle : 190 !!||||||! !|||||||||||||||||||||.!.:!:|||!..|||||||||||| alLeuProSerAsnGluThrArgProArgGlnGlnLeuPheArgValAsnTyrIle 1229424 : TCCTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATA : 1229371 191 : IleLeuAspAsnTyrGluTyrPheTyrIleValTyrValHisLeuSerCysSerAl : 209 |||!!!|||.!. !!:||||||!:! !||||||:!!!!.|||! !!! !!!.! IlePheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPheTrpCysTh 1229370 : ATTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTAC : 1229314 210 : aAlaIleIleValIleIleIleIleSerValAspSerLeuTyrIleSerIleIleT : 228 ! !:!!:!!|||!!: !||||||!!!|||||||||||||||!!:! !||||||| rIleValLeuValMetAlaIleIleThrValAspSerLeuTyrMetIleIleIleT 1229313 : AATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGATCATAATTT : 1229257 229 : yrHisAlaCysGlyLeuPheAlaAlaCysGly : 238 |||||||| !!|||:!!|||||| !|||||| yrHisAlaSerGlyMetPheAlaIleCysGly 1229256 : ACCATGCCAGCGGAATGTTCGCTATATGCGGG : 1229225 vulgar: AfOr105 69 238 . KQ414851.1 1229932 1229224 - 292 M 65 195 G 1 0 M 15 45 5 0 2 I 0 200 3 0 2 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229932 292 - . gene_id 3 ; sequence AfOr105 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1229693 1229932 . - . KQ414851.1 exonerate:protein2genome:local exon 1229693 1229932 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local splice5 1229691 1229692 . - . intron_id 1 ; splice_site "TT" KQ414851.1 exonerate:protein2genome:local intron 1229489 1229692 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1229489 1229490 . - . intron_id 0 ; splice_site "AT" KQ414851.1 exonerate:protein2genome:local cds 1229225 1229488 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229488 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229932 292 - . alignment_id 3 ; Query AfOr105 ; Align 1229933 70 195 ; Align 1229738 136 45 ; Align 1229489 151 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr105 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 291 Query range: 309 -> 414 Target range: 1243000 -> 1242521 310 : ValPheLeuAspArgProGluGluAlaIleArgAlaIleIleTyrValMetAlaGl : 328 :!! !|||||||||||||||||| ! !||| ! ! !!:!:!!!!:||||| IleAsnLeuAspArgProGluGluPheAlaArgIleAlaCysPheLeuIleAlaGl 1243000 : ATAAATCTAGATCGGCCTGAAGAATTTGCCAGAATTGCTTGTTTCCTTATAGCTCA : 1242946 329 : nGlnPheHisLeuTyrAlaIleSerLeuProGlyGluMetLeuLeuAsnGlnSerS : 347 ||||.!!||||||! !.!||||||:!!||||||:!!!!::!! !:!!||||||| nGlnLeuHisLeuLeuValIleSerValProGlyGlnIleIleThrAspGlnSerS 1242945 : GCAACTCCACTTGTTAGTCATTAGTGTACCAGGGCAGATCATCACGGATCAAAGTT : 1242889 348 : erLysLeuAlaAspLys{Il} >>>> Target Intron 1 >>>> {e}Tyr : 354 ||||||||.!! ! ! {||} 72 bp {|}||| erLysLeuThrIleAsp{Il}++ ++{e}Tyr 1242888 : CAAAGTTGACCATTGAC{AT}gt.........................ag{A}TAT : 1242796 355 : AspSerGluTrpTyrLysIleProMetLysValGlnLysValLeuHisIleMetGl : 373 :!!||| !||||||:!!! !|||:!! !:!!||||||:!!|||||||||:!:|| AsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIleValGl 1242795 : AACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATATAGTACA : 1242739 374 : nIleArgSerAsnLysProCysIleLeuThrAlaAlaGlyLeuTyrGluMetLysI : 392 ||||||||||..!|||||||||! !|||..!|||!.!|||||||||||||||!!.| nIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluMetAsnI 1242738 : AATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAATGAACA : 1242682 393 : leGluSerPheGlyIle >>>> Target Intron 2 >>>> ThrIleLysT : 401 |||||!:!|||||| ! 92 bp |||.!!|||| leGluAsnPheGlySer++ ++ThrPheLysT 1242681 : TTGAGAATTTTGGATCAgt.........................agacTTTCAAAA : 1242563 402 : hrCysMetSerTyrPheMetMetPheLeuSerLeuArgGlu : 414 |||||!!:|||||||||! !|||.!!||||||!!!!:!!!: hrCysIleSerTyrPheThrMetLeuLeuSerPheLysAsp 1242562 : CCTGCATATCGTACTTTACGATGCTCTTATCATTCAAAGAC : 1242522 vulgar: AfOr105 309 414 . KQ414851.1 1243000 1242521 - 291 M 43 129 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 44 132 5 0 2 I 0 88 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242522 1243000 291 - . gene_id 4 ; sequence AfOr105 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1242870 1243000 . - . KQ414851.1 exonerate:protein2genome:local exon 1242870 1243000 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242868 1242869 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242798 1242869 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1242798 1242799 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242665 1242797 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242797 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 1 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242522 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242522 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242522 1243000 291 - . alignment_id 4 ; Query AfOr105 ; Align 1243001 310 129 ; Align 1242797 354 132 ; Align 1242573 398 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr105 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 210 Query range: 151 -> 238 Target range: 1240082 -> 1239821 152 : LeuLeuThrPheLeuValIlePheLeuSerLeuProLeuCysAsnProIleLeuAs : 170 |||!!!:!: ||| ||||||||| !:!!|||::: |||:::||||| LeuPheSerValLeuPheIlePheLeuValValProIlePheProProLeuLeuAs 1240082 : TTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcctcctcttctggA : 1240028 171 : pIleIleLeuProLeuAsnGluThrArgProArgGlnAsnIlePheAsnValAsnT : 189 ||||:!! !|||||||||||||||||| !!||||||...||||||...||||||| pIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIlePheLysValAsnT 1240027 : CATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatattcaaagttaaTT : 1239971 190 : yrIleIleLeuAspAsnTyrGluTyrPheTyrIleValTyrValHisLeuSerCys : 207 ||:!:|||:!!|||!.. !!||| ! ! |||..!||| !!|||||||||!! yrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPheHisLeuSerTrp 1239970 : ACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTTCACTTGTCTTGG : 1239917 208 : SerAlaAlaIleIleValIleIleIleIleSerValAspSerLeuTyrIleSerIl : 226 !!!.!! !! !:!!! !||| !:!::!!||| !!!:! !:!!|||:!! !:! ThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIleTyrValLeuLe 1239916 : ACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGTCCTTCT : 1239860 227 : eIleTyrHisAlaCysGlyLeuPheAlaAlaCysGly : 238 !|||:!!|||.!! !!||||||||||||!.!..!||| uIleHisHisThrSerGlyLeuPheAlaValAlaGly 1239859 : TATTCATCATACCAGCGGTCTGTTTGCTGTGGCTGgg : 1239822 vulgar: AfOr105 151 238 . KQ414851.1 1240082 1239821 - 210 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240082 210 - . gene_id 5 ; sequence AfOr105 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239822 1240082 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240082 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240082 210 - . alignment_id 5 ; Query AfOr105 ; Align 1240083 152 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr105 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 199 Query range: 150 -> 238 Target range: 1243860 -> 1243599 151 : SerLeuLeuThrPheLeuValIlePheLeuSerLeuProLeuCysAsnProIleLe : 169 !!!|||!!! !|||! !:!!||||||:!!! !!!!|||||| ! |||||||| ThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleLe 1243860 : ACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATT : 1243806 170 : uAspIleIleLeuProLeuAsnGluThrArgProArgGlnAsnIlePheAsnValA : 188 ||||:!!:!!! !|||||||||||||||||| !!||| !...:::......:::. uAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuG 1243805 : GGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgc : 1243749 189 : snTyrIleIleLeuAspAsnTyrGluTyrPheTyrIleValTyrValHisLeuSer : 206 ..||| :!:!!!|||! ::: |||||| :::||||||:!! !.!! lnTyr---LeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGly 1243748 : aatac---cTGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGC : 1243698 207 : CysSerAlaAlaIleIleValIleIleIleIleSerValAspSerLeuTyrIleSe : 225 !! !!!:!! !!!:! !:!!!!::!!||||||!!!:!!|||:!!||||||:!: TrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValVa 1243697 : TGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGT : 1243641 226 : rIleIleTyrHisAlaCysGlyLeuPheAlaAlaCysGly : 238 !||||||:!!|||.!!|||||||||||||||!.!|||||| lIleIleHisHisThrCysGlyLeuPheAlaValCysGly 1243640 : AATCATTCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: AfOr105 150 238 . KQ414851.1 1243860 1243599 - 199 M 39 117 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243860 199 - . gene_id 6 ; sequence AfOr105 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243860 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243860 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243860 199 - . alignment_id 6 ; Query AfOr105 ; Align 1243861 151 117 ; Align 1243744 191 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr105 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 149 Query range: 353 -> 395 Target range: 1228545 -> 1228419 354 : TyrAspSerGluTrpTyrLysIleProMetLysValGlnLysValLeuHisIleMe : 372 |||..!||| !|||||||||:!! !! ||| !!|||::!|||:!!:!!!!:|| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 373 : tGlnIleArgSerAsnLysProCysIleLeuThrAlaAlaGlyLeuTyrGluMetL : 391 ||||||||||:!! |||||||||||||||||||||!.!|||||||||||||||! tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 392 : ysIleGluSerPhe : 395 !.!!:|||!:!||| snMetGluAsnPhe 1228433 : ACATGGAGAACTTT : 1228420 vulgar: AfOr105 353 395 . KQ414851.1 1228545 1228419 - 149 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228420 1228545 149 - . gene_id 7 ; sequence AfOr105 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228420 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228420 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228420 1228545 149 - . alignment_id 7 ; Query AfOr105 ; Align 1228546 354 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr105 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 306 -> 354 Target range: 1228758 -> 1228614 307 : GluIleValValPheLeuAspArgProGluGluAlaIleArgAlaIleIleTyrVa : 325 :!!|||:!!:!! !||||||||||||...|||||||||||| ! !:!: !:! GlnIleMetLeuAlaLeuAspArgProSerGluAlaIleArgTyrSerValValLe 1228758 : CAGATAATGCTCGCCCTGGATAGACCGAGCGAAGCTATTAGATATTCTGTGGTTCT : 1228704 326 : lMetAlaGlnGlnPheHisLeuTyrAlaIleSerLeuProGlyGluMetLeuLeuA : 344 ! !.! !||||||||||||!:! !|||||||||||||||:!!! |||:!!: uGlyGlyAlaGlnPheHisLeuPheIleIleSerLeuProGlyGlnThrLeuValA 1228703 : TGGAGGTGCGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACACTCGTGG : 1228647 345 : snGlnSerSerLysLeuAlaAspLysIleTyr : 354 !!!!.!!!!!!! !|||.!!:!! ! !!:||| spHisCysThrMetLeuThrAsnAspMetTyr 1228646 : ATCATTGTACCATGCTAACGAACGATATGTAC : 1228615 vulgar: AfOr105 306 354 . KQ414851.1 1228758 1228614 - 109 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228615 1228758 109 - . gene_id 8 ; sequence AfOr105 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228615 1228758 . - . KQ414851.1 exonerate:protein2genome:local exon 1228615 1228758 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228615 1228758 109 - . alignment_id 8 ; Query AfOr105 ; Align 1228759 307 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 161 Query range: 137 -> 224 Target range: 1243860 -> 1243599 138 : SerIlePhePheCysGlyPheMetPheLeuLeuIleProSerIleProProIleLe : 156 !!!:!:|||!:!! !..!.!.!!:|||:!!|||.!!|||! !|||||||||||||| ThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleLe 1243860 : ACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATT : 1243806 157 : uAsnIleIleSerProLeuAsnValSerArgGlyArgGluLeuIleTyrProSerT : 175 |:!!:!!:!!||||||||||||! !!!!|||..!||| ! ::: uAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuG 1243805 : GGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgc : 1243749 176 : yrTyrPheValAspGluGluLysTyrTyrTyrProIleLeuMetHisMetIleAla : 193 |||.!. !!||| |||||| :::||| ::: :!::!!! ! ! lnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrp 1243748 : aataccTGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGCTGG : 1243695 194 : ValAlaLeuIleLeuThrSerValTyrValAlaCysAspThrTyrLeuValTyrIl : 212 !:!!!!!!!: !! !! !||| :!!.!! |||.!!! ! !||| || CysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValValIl 1243694 : TGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAAT : 1243638 213 : eValHisHisGlyCysAlaLeuLeuAlaIleSerGly : 224 |:!!|||||| !|||!.!|||!!!|||:!!!!!||| eIleHisHisThrCysGlyLeuPheAlaValCysGly 1243637 : CATTCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: AfOr111 137 224 . KQ414851.1 1243860 1243599 - 161 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243860 161 - . gene_id 1 ; sequence AfOr111 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243860 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243860 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243860 161 - . alignment_id 1 ; Query AfOr111 ; Align 1243861 138 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 148 Query range: 129 -> 215 Target range: 1243854 -> 1243599 130 : TyrPheCysSerIleLeuPheLeuLeuLeuProPheThrProIleLeuLeuAspIl : 148 !:!!:!! !||||||:!!|||:!!|||!!!|||!!.! !||| !:!!||||||:! PheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleLeuAspVa 1243854 : TTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGT : 1243800 149 : ePheIleProLeuAsnGluSerArgProArgValGlnMetTyrProAlaTyrTyrT : 167 ! !! !||||||||||||!!!||| !!|||:!!:::::: ||| lValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuGlnTyrL 1243799 : TGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgcaatacc : 1243743 168 : yrIleGluAsnGluAlaAspTyrTyrTyrProIleLeuIlePheSerIleValSer : 185 .!!!!:! ||| ::::::||| :!! ! !.!! !||| euPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSer 1243742 : TGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGCTGGTGCTCG : 1243689 186 : LeuLeuThrAlaMetCysValPheIleAlaThrAspThrMetLeuIleTyrIleVa : 204 !!!:!!||| ||| |||.!.|||.!!! !|||.!!:!:! !:!: |||:! PheMetThr---MetMetValIleIleThrIleAspAlaLeuTyrValValIleIl 1243688 : TTCATGACC---ATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCAT : 1243635 205 : lGlnHisAlaCysGlyLeuLeuAlaLeuAlaGly : 215 !!!.|||.!!|||||||||!!!|||:!!..!||| eHisHisThrCysGlyLeuPheAlaValCysGly 1243634 : TCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: AfOr106 129 215 . KQ414851.1 1243854 1243599 - 148 M 59 177 G 1 0 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243854 148 - . gene_id 1 ; sequence AfOr106 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243854 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243854 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243854 148 - . alignment_id 1 ; Query AfOr106 ; Align 1243855 130 177 ; Align 1243678 190 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 148 Query range: 130 -> 215 Target range: 1229479 -> 1229224 131 : PheCysSerIleLeuPheLeuLeuLeuProPheThrProIleLeuLeuAspIlePh : 149 |||...! ! !:!!|||||||||:!!|||!!. ! ! ! !||||||||| ! PheAlaMetCysValPheLeuLeuValProLeuPheGlyProAlaLeuAspIleVa 1229479 : TTCGCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCGT : 1229425 150 : eIleProLeuAsnGluSerArgProArgValGlnMetTyrProAlaTyrTyrTyrI : 168 !:!!|||! !||||||!!!||||||||| !|||:!!!:! !!.! !!||| | lLeuProSerAsnGluThrArgProArgGlnGlnLeuPheArgValAsnTyrIleI 1229424 : CCTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAA : 1229368 169 : leGluAsnGluAlaAspTyrTyrTyrProIleLeuIlePheSerIleValSerLeu : 186 || :!!:!!|||||||||!:!!:! !:!:! !||| ! !.!! !!!! ! lePheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPheTrpCysThr 1229367 : TTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACA : 1229314 187 : LeuThrAlaMetCysValPheIleAlaThrAspThrMetLeuIleTyrIleValGl : 205 :!!..! !:!: !.!.!!|||.!!..!|||:!!:!!! !!!: !|||:!! ! IleValLeuValMetAlaIleIleThrValAspSerLeuTyrMetIleIleIleTy 1229313 : ATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGATCATAATTTA : 1229257 206 : nHisAlaCysGlyLeuLeuAlaLeuAlaGly : 215 |||||| !!|||:!!!!!|||:!!..!||| rHisAlaSerGlyMetPheAlaIleCysGly 1229256 : CCATGCCAGCGGAATGTTCGCTATATGCGGG : 1229225 vulgar: AfOr106 130 215 . KQ414851.1 1229479 1229224 - 148 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229479 148 - . gene_id 2 ; sequence AfOr106 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229225 1229479 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229479 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229479 148 - . alignment_id 2 ; Query AfOr106 ; Align 1229480 131 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 147 Query range: 133 -> 215 Target range: 1234305 -> 1234059 134 : IleLeuPheLeuLeuLeuProPheThrProIleLeuLeuAspIlePheIleProLe : 152 :!!:!!|||||||||:!!|||!!...! ! !!!!||||||:!! !!:!!||||| ValValPheLeuLeuValProLeuValPheProPheLeuAspValValLeuProLe 1234305 : GTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGTCGTCCTTCCGTT : 1234251 153 : uAsnGluSerArgProArgValGlnMetTyrProAlaTyrTyrTyrIleGluAsnG : 171 |||||||!!!||||||||| !||| !:! !!.! !!||| ! :!!| uAsnGluThrArgProArgGlnGlnGlyPheArgValAsnTyrLeuTyrPheAspG 1234250 : AAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTATATTTCGACG : 1234194 172 : luAlaAspTyrTyrTyrProIleLeuIlePheSerIleValSerLeuLeuThrAla : 189 |||||||||||!:!!:! !:!:! !.!! ! ! ! !.!! !:!!..!!.! luAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaValValVal 1234193 : AAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAGTCGTTGTT : 1234140 190 : MetCysValPheIleAlaThrAspThrMetLeuIleTyrIleValGlnHisAlaCy : 208 :!: :!!.!.|||.!!..!|||:!!:!!! !!!: |||:!!!!.|||||| ! ValMetIleIleIleThrValAspSerLeuTyrMetIleIleIleHisHisAlaSe 1234139 : GTCATGATCATAATCACCGTAGACTCGTTGTACATGATAATAATTCACCATGCCAG : 1234083 209 : sGlyLeuLeuAlaLeuAlaGly : 215 !|||:!!!!!|||:!!..!||| rGlyMetPheAlaValCysGly 1234082 : CGGAATGTTCGCCGTGTGCGGG : 1234060 vulgar: AfOr106 133 215 . KQ414851.1 1234305 1234059 - 147 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234305 147 - . gene_id 3 ; sequence AfOr106 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234305 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234305 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234305 147 - . alignment_id 3 ; Query AfOr106 ; Align 1234306 134 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 143 Query range: 122 -> 215 Target range: 1224303 -> 1224024 123 : LeuIleTyrValValAsnAlaTyrPheCysSerIleLeuPheLeuLeuLeuProPh : 141 ||||||::: ::: !!::.!. ! !:!!:!!!:!:!! !!!!|||!! LeuIlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLe 1224303 : ttaattttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATT : 1224249 142 : eThrProIleLeuLeuAspIlePheIleProLeuAsnGluSerArgProArgValG : 160 .! ! ! :!!||||||:!! !! ||||||||||||!!!||||||||| !! uIleAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgL 1224248 : GATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGC : 1224192 161 : lnMetTyrProAlaTyrTyrTyrIleGluAsnGluAlaAspTyrTyrTyrProIle : 178 :!! !|||!.! !||| .!! !:!!||| !!!::!!!:!||| !:!: euLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerVal 1224191 : TTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTG : 1224138 179 : LeuIlePheSerIleValSerLeuLeuThrAlaMetCysValPheIleAlaThrAs : 197 !.!! ! ! !..!|||:!!:!!:!!..! ! :!!.!.||||||..!|| AsnPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAs 1224137 : AATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGA : 1224081 198 : pThrMetLeuIleTyrIleValGlnHisAlaCysGlyLeuLeuAlaLeuAlaGly : 215 |! !:!:! !||| !|||:!! ||| !|||||||||!!!|||:!!..!||| pMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaValCysGly 1224080 : TATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: AfOr106 122 215 . KQ414851.1 1224303 1224024 - 143 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224303 143 - . gene_id 4 ; sequence AfOr106 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224303 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224303 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224303 143 - . alignment_id 4 ; Query AfOr106 ; Align 1224304 123 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 329 -> 387 Target range: 1228545 -> 1228296 330 : TyrGluProTyrTrpTyrAsnLeuGlnSerLysMetGlnAlaMetPheValLeuIl : 348 |||... !! ||||||!!.:!!..!:!!|||.!.||| !:!:.!! !:!!!! TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 349 : eLeuArgArgAsnLeuAsnProProLeuLeuThrAlaGlyGlyLeuValGlnLeuA : 367 :! !! !||| !|||!!.||| !:!!|||||||||||||||||| !:!!:!!| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 368 : snLeuAsnThrPheAlaLys >>>> Target Intron 1 >>>> ValValL : 376 ||:!!.!.!.!||||||!!. 75 bp ..! !!| snMetGluAsnPheAlaAsn++ ++ThrPheL 1228433 : ACATGGAGAACTTTGCAAACgt.........................agACATTCA : 1228332 377 : ysThrSerValSerTyrPheThrValLeuLysSer : 387 |||||!!!:!!||||||||||||:!!|||! !||| ysThrCysMetSerTyrPheThrMetLeuMetSer 1228331 : AAACGTGCATGTCGTACTTCACAATGCTGATGTCA : 1228297 vulgar: AfOr106 329 387 . KQ414851.1 1228545 1228296 - 116 M 44 132 5 0 2 I 0 71 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228297 1228545 116 - . gene_id 5 ; sequence AfOr106 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1228414 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228414 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228412 1228413 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1228339 1228413 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1228339 1228340 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228297 1228338 . - . KQ414851.1 exonerate:protein2genome:local exon 1228297 1228338 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228297 1228545 116 - . alignment_id 5 ; Query AfOr106 ; Align 1228546 330 132 ; Align 1228339 374 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 329 -> 388 Target range: 1233381 -> 1233129 330 : TyrGluProTyrTrpTyrAsnLeuGlnSerLysMetGlnAlaMetPheValLeuIl : 348 |||... !! ||||||!!.:!!! !:!!|||.!.||| !:!:.!! ! !!! TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMe 1233381 : TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGAT : 1233327 349 : eLeuArgArgAsnLeuAsnProProLeuLeuThrAlaGlyGlyLeuValGlnLeuA : 367 :! !! !||| !|||!!.||| !:!!|||||||||||||||||| !:!!:!!| tGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetA 1233326 : GCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGA : 1233270 368 : snLeuAsnThrPheAlaLys >>>> Target Intron 1 >>>> ValValL : 376 ||:!!.!.!.!||||||!!. 75 bp ..! !!| snMetGluAsnPheAlaAsn++ ++ThrPheL 1233269 : ACATGGAGAACTTTGCAAACgt.........................agaCATTCA : 1233168 377 : ysThrSerValSerTyrPheThrValLeuLysSerVal : 388 |||||!!!:!!||||||||||||:!!|||! !|||:!! ysThrCysMetSerTyrPheThrMetLeuMetSerLeu 1233167 : AAACGTGCATGTCATACTTCACAATGCTGATGTCACTT : 1233130 vulgar: AfOr106 329 388 . KQ414851.1 1233381 1233129 - 113 M 44 132 5 0 2 I 0 71 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233130 1233381 113 - . gene_id 6 ; sequence AfOr106 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233250 1233381 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233381 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233130 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233130 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233130 1233381 113 - . alignment_id 6 ; Query AfOr106 ; Align 1233382 330 132 ; Align 1233175 374 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 118 -> 223 Target range: 1240112 -> 1239797 119 : ValPhePheIleLeuIleTyrValValAsnAlaTyrPheCysSerIleLeuPheLe : 137 ::! !!:!|||! ! ! ! !||| ! !!:!! ...:::||||| IleAspTyrIleTyrTyrIleSerValValLeuPheSerValLeuPheIlePheLe 1240112 : atCGATTACATATATTACATTTCAGTCGTTTTATTTTCcgttttgttcatttttct : 1240058 138 : uLeuLeuProPheThrProIleLeuLeuAspIlePheIleProLeuAsnGluSerA : 156 |:!!:!!|||... ||| ||||||||||||!!.! !||||||||||||!!!| uValValProIlePheProProLeuLeuAspIleLeuLysProLeuAsnGluThrA 1240057 : ggTGGTTCcgatttttcctcctcttctggACATTTTAAAACCTTTAAACGAAACCC : 1240001 157 : rgProArgValGlnMetTyrProAlaTyrTyrTyrIleGluAsnGluAlaAspTyr : 174 || !!||| ::::::::: ... !||| ||| :!!..!! !!!: ! rgAlaArgGlnLysIlePheLysValAsnTyrLeuIleIleAspArgAspGluGln 1240000 : GAGCACgccagaaaatattcaaagttaaTTACCTGATCATTGACAGGGATGAACAA : 1239947 175 : TyrTyrProIleLeuIlePheSerIleValSerLeuLeuThrAlaMetCysValPh : 193 ! !! !! !.!! !! ! ! !!!! !:!!||| ! ! ! ! AlaLeuIleThrTyrPheHisLeuSerTrpThrThrIleThrLeuGlyIleSerVa 1239946 : GCTCTGATCACATATTTTCACTTGTCTTGGACAACTATCACTCTTGGGATATCTGT : 1239890 194 : eIleAlaThrAspThrMetLeuIleTyrIleValGlnHisAlaCysGlyLeuLeuA : 212 :!!::!:!!!!: !!!:! !:!! !:!!:!!!!.|||.!! !!||||||!!!| lLeuSerSerGluLeuIleTyrValLeuLeuIleHisHisThrSerGlyLeuPheA 1239889 : GCTTAGCTCAGAATTGATATACGTCCTTCTTATTCATCATACCAGCGGTCTGTTTG : 1239833 213 : laLeuAlaGlyHisArgPheArgAsnSerLeuAsn : 223 ||:!!|||||| |||:::::::!!! !||| laValAlaGly***IlePheLysHisThrCysAsn 1239832 : CTGTGGCTGggtaaatattcaaacataCCTGTAac : 1239798 vulgar: AfOr106 118 223 . KQ414851.1 1240112 1239797 - 112 M 105 315 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239798 1240112 112 - . gene_id 7 ; sequence AfOr106 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239798 1240112 . - . KQ414851.1 exonerate:protein2genome:local exon 1239798 1240112 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239798 1240112 112 - . alignment_id 7 ; Query AfOr106 ; Align 1240113 119 315 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 138 -> 214 Target range: 1224261 -> 1224030 139 : LeuMetTrpProMetValProProIleLeuAspIleIleMetProLeuAsnValSe : 157 :!!! !::|||:!!:!! !|||:!!||||||:!!:!! !|||||||||! !!! MetSerPheProLeuIleAsnProValLeuAspValValAlaProLeuAsnGluTh 1224261 : ATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGAC : 1224207 158 : rArgLysArgIleLeuLeuTyrPro<->AlaTyrPheTrpLeuAspAspGluLysT : 175 !||| |||! |||||| !||| ::!|||.!.!:::!!|||!!: ! :!!: rArgProArgArgLeuLeuLeuProValSerTyrIlePheIleAspGluTyrGluH 1224206 : CCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGC : 1224150 176 : yrTyrValLeuLeuLeuGlyHisMetIleIleThrIleLeuMetIleCysPheIle : 193 !!!:! ! !:!! ! !|||:!: !! !!:!:!::!! ! ! .!.!!: isPheTyrSerValAsnPheHisLeuTyrThrSerValIleSerCysGlyMetMet 1224149 : ATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATG : 1224096 194 : PheCysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLe : 212 .!. !||| |||||| |||:!! ! !:!! ||| !|||||||||!! IleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPh 1224095 : ATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTT : 1224039 213 : uAlaIle : 214 !|||:!: eAlaVal 1224038 : CGCAGTG : 1224031 vulgar: AfOr112_1 138 214 . KQ414851.1 1224261 1224030 - 130 M 27 81 G 0 3 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224261 130 - . gene_id 1 ; sequence AfOr112_1 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224261 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224261 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224261 130 - . alignment_id 1 ; Query AfOr112_1 ; Align 1224262 139 81 ; Align 1224178 166 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 136 -> 214 Target range: 1243839 -> 1243605 137 : PheMetLeuMetTrpProMetValProProIleLeuAspIleIleMetProLeuAs : 155 .!..!.:!!:!:!::|||:!::!!|||||||||||||||:!!:!! |||||||| IlePheValLeuPheProLeuIleProProIleLeuAspValValSerProLeuAs 1243839 : ATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAA : 1243785 156 : nValSerArgLysArgIleLeuLeuTyrProAlaTyrPheTrpLeuAspAspGluL : 174 |! !!!!|||...|||||| ::: ::: !!!!||| |||| nGluThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspMetGluL 1243784 : TGAGACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACAtggaga : 1243728 175 : ysTyrTyrValLeuLeuLeuGlyHisMetIleIleThrIleLeuMetIleCysPhe : 192 || ::: ||| ! !:!!! ! ! !!!|||! ! .!. ysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMet 1243727 : agaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATG : 1243674 193 : IlePheCysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLe : 211 :!!.!. !.!! ||| ! |||||| !:!!!!.|||.!!|||||||| ValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGlyLe 1243673 : GTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTT : 1243617 212 : uLeuAlaIle : 214 |!!!|||:!! uPheAlaVal 1243616 : ATTCGCTGTT : 1243606 vulgar: AfOr112_1 136 214 . KQ414851.1 1243839 1243605 - 128 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243839 128 - . gene_id 2 ; sequence AfOr112_1 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243839 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243839 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243839 128 - . alignment_id 2 ; Query AfOr112_1 ; Align 1243840 137 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 136 -> 223 Target range: 1240064 -> 1239800 137 : PheMetLeuMetTrpProMetValProProIleLeuAspIleIleMetProLeuAs : 155 ......|||:!! |||::: ||||||:::|||||||||:!!! |||||||| IlePheLeuValValProIlePheProProLeuLeuAspIleLeuLysProLeuAs 1240064 : atttttctggTGGTTCcgatttttcctcctcttctggACATTTTAAAACCTTTAAA : 1240010 156 : nValSerArgLysArgIleLeuLeuTyrProAla<->TyrPheTrpLeuAspAspG : 173 |! !!!!||| !||| :::::: ... |||.!. :!!||| ! nGluThrArgAlaArgGlnLysIlePheLysValAsnTyrLeuIleIleAspArgA 1240009 : CGAAACCCGAGCACgccagaaaatattcaaagttaaTTACCTGATCATTGACAGGG : 1239953 174 : luLysTyrTyrValLeuLeuLeuGlyHisMetIleIleThrIleLeuMetIleCys : 191 !::!! ! !:!!:!! !! ! !|||:!! ! |||! !:!!! :!! ! spGluGlnAlaLeuIleThrTyrPheHisLeuSerTrpThrThrIleThrLeuGly 1239952 : ATGAACAAGCTCTGATCACATATTTTCACTTGTCTTGGACAACTATCACTCTTGGG : 1239899 192 : PheIlePheCysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGl : 210 .!. ! ! !::!! !!::!!! |||||| ! !:!!!!.|||.!! !!|| IleSerValLeuSerSerGluLeuIleTyrValLeuLeuIleHisHisThrSerGl 1239898 : ATATCTGTGCTTAGCTCAGAATTGATATACGTCCTTCTTATTCATCATACCAGCGG : 1239842 211 : yLeuLeuAlaIleAlaLysTyrArgPheLysAsnValCys : 223 ||||!!!|||:!:||| ||||||:::..!||| yLeuPheAlaValAlaGly***IlePheLysHisThrCys 1239841 : TCTGTTTGCTGTGGCTGggtaaatattcaaacataCCTGT : 1239801 vulgar: AfOr112_1 136 223 . KQ414851.1 1240064 1239800 - 112 M 30 90 G 0 3 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239801 1240064 112 - . gene_id 3 ; sequence AfOr112_1 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239801 1240064 . - . KQ414851.1 exonerate:protein2genome:local exon 1239801 1240064 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239801 1240064 112 - . alignment_id 3 ; Query AfOr112_1 ; Align 1240065 137 90 ; Align 1239972 167 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr121 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 0 -> 224 Target range: 278534 -> 279221 1 : MetValThrSerGluSerLysLysTyrSerLysAspTyrGluTrpAlaValArgLeuA : 20 :!:..!:!!||| ..!..!! !!::!:!! !|||!:: !!::::!|||!:!:!!| ValThrSerSerThrAspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetA 278535 : GTCACTTCGTCAACCGATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGA : 278592 21 : snArgPheSerLeuAsnLeuIleCysLeuTrpProValGlu<-><->GluGlnAsnIl : 37 |||||!::! !|||!!.! !||| !!:!!||||||:!!... ! ! !.!:! snArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLe 278593 : ACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTT : 278649 38 : eArgLysGlnSerTrpThrLysLeuHisIleIleAlaCysPheMetLeuIleThrPhe : 56 :..!||| |||! ..! ||| :!!|||::!||||||:!!:!! ! !.!! uGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeu 278650 : GGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTC : 278706 57 : ValCysThrIleProCysLeuCysAlaLeuLysGlnCysAsnThrLeuMetGluValT : 76 :!! !! ! !! ! ! !.!||| ! :!! !..! !||| ! !! LeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysI 278707 : TTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGA : 278766 77 : hrAspAsnLeuAlaTyrSerIleProLeuIleIleThrThrIleLysPheIleValIl : 95 ! ! ! :!!!.! ! !! ! !! !! !!:.!!|||||||||!:! !:!!:! leLysMetIleGlyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLe 278767 : TCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCT : 278823 96 : eSerSerLysLysLysValLeuSerProIleValAsnMetIleAlaLysAspTrp<-> : 114 !! !|||::: !:!!.!! ! !|||||| ||| !! !|||||| uMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSer 278824 : AATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCT : 278880 115 : <-><->LeuLysLeuLysThrAspTyrGluLysAspValMetIleGlnArgAlaArgI : 131 |||..!! !::: ::: |||:::::::::|||! .!.!!!||||||| LeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgI 278881 : CTTACACTTTCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAA : 278940 132 : leAlaArgIleIleAsnIlePheGlyTyrIleLeuMetCysIle<->LeuIleTrpLe : 149 ||!.!||| !:!: ||||||.!! ! !!!!|||! ! ! !:!!!::! leGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTy 278941 : TTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTA : 278997 150 : uLeuMetIleLeuProArgPheGlyIleThrIleArgTyrValMetAsnGlyThrAsp : 168 ! ! :!::!!||| !|||!.!:!! !! ..! !:!! |||! !|||! rThrAlaValMetProLeuPheAlaValArgThrGluIleIleAspAsnGluThrVal 278998 : CACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTG : 279054 169 : AlaLysLysLeuPheProLeuProThrTyrTyrIlePheAspValSerGluThrProT : 188 !...:!! !||||||:!! ! ! !:!!.!!||| ! !! !:!|||! ArgSerGlnAlaPheProIle---TyrArgGlyLeuLeuAspProArgThrSerProS 279055 : AGATCTCAAGCGTTCCCGATC---TATCGCGGCCTCCTCGATCCGCGTACCAGCCCGT : 279111 189 : yrPheGluIleThrTyrThrLeuGlnSerIleSerLeuLeuIleAlaAlaPheCysTy : 207 |||||||||..! ! !:!!|||!!!:!::!! !!!!:!! ! !! ! erPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValTh 279112 : CGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCAC : 279168 208 : rAlaGlyValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGln : 224 !!.!|||!.! !!:!!!..!!!.!:!:!!!:!!:!!|||:!!||||||||| rValGlyAlaCysSerLeuIleAlaValPheValMetHisValCysGlyGln 279169 : TGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAA : 279221 vulgar: AfOr121 0 224 . KQ414889.1 278534 279221 + 138 M 33 99 G 0 6 M 80 240 G 0 9 M 32 96 G 0 3 M 30 90 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278535 279221 138 + . gene_id 1 ; sequence AfOr121 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278535 279221 . + . KQ414889.1 exonerate:protein2genome:local exon 278535 279221 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278535 279221 138 + . alignment_id 1 ; Query AfOr121 ; Align 278535 1 99 ; Align 278640 34 240 ; Align 278889 114 96 ; Align 278988 146 90 ; Align 279078 177 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr121 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 326 -> 380 Target range: 292380 -> 292542 327 : LeuValThrGlnSerGluGluIleHisAsnAlaAlaTyrGluCysGluTrpValSerL : 346 :!!:!! !|||.!!...|||||| :!!|||:!!|||!!: |||||| !!:!| ValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnL 292381 : GTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATC : 292438 347 : euLysTyrThrLysAlaLysSerLeuIleIleIleMetAlaArgSerLysLysProLe : 365 || ! !||||||:::..!:!!:!!:!::!::!:|||! !!!!||| ! |||:! euProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIl 292439 : TGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGAT : 292495 366 : uTyrLeuThrAlaGlyLysLeuPheProValThrMetLeuThrPhe : 380 ! ! |||||||||||||||:!!||| !:!!:!!:!! !|||||| eLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPhe 292496 : CAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTT : 292542 vulgar: AfOr121 326 380 . KQ414889.1 292380 292542 + 120 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292381 292542 120 + . gene_id 2 ; sequence AfOr121 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292381 292542 . + . KQ414889.1 exonerate:protein2genome:local exon 292381 292542 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292381 292542 120 + . alignment_id 2 ; Query AfOr121 ; Align 292381 327 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr121 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 0 -> 224 Target range: 284481 -> 286171 1 : MetValThrSerGluSerLysLysTyrSerLysAspTyrGluTrpAlaValArgLeuA : 20 :!:..!:!!||| ..!..!! !!::..!! !|||!:: !!::::!|||!:!:!!| ValThrSerSerThrAspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetA 284482 : GTCACTTCTTCAACCGATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGA : 284539 21 : snArgPheSerLeuAsnLeuIleCysLeuTrpProValGlu<-><->GluGlnAsnIl : 37 |||||!::! !|||!!.! !||| !!:!!||||||:!!... ! ! !.!:! snArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLe 284540 : ACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTT : 284596 38 : eArgLysGlnSerTrpThrLysLeuHisIleIleAlaCysPheMetLeuIleThrPhe : 56 :..!||| |||! ..! ||| :!!|||::!||||||:!!:!! ! !.!! uGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeu 284597 : GGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTC : 284653 57 : ValCysThrIleProCysLeuCysAlaLeuLysGlnCysAsnThrLeuMetGluValT : 76 :!! !! ! !! ! ! !.!||| ! :!! !..! !||| ! !! LeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysI 284654 : TTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGA : 284713 77 : hrAspAsnLeuAlaTyrSerIleProLeuIleIleThrThrIleLysPheIleValIl : 95 ! ! ! :!!!.! ! !! ! !! !!!:!!:.!!.!!||||||!:! !:!!:! leLysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLe 284714 : TCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCT : 284770 96 : eSerSerLysLysLysValLeuSerProIleValAsnMetIleAlaLysAsp{Tr} : 113 !! !|||::: !:!!.!!! ! !|||!!. ||| ! !|||{||} uIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIleArgAlaAsp{Tr}++ 284771 : AATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGAC{TG}gt : 284826 114 : >>>> Target Intron 1 >>>> {p}LeuLysLeuLysThrAspTyrGluLysA : 123 1012 bp {|}|||..!! !!.. ::: |||:::: +-{p}LeuSerHisSerGlnGluGluGluArgG 284827 : .........................ac{G}CTTTCGCATAGtcaagaagaggagagag : 285866 124 : spValMetIleGlnArgAlaArgIleAlaArgIleIleAsnIlePhe<->GlyTyrIl : 141 :::::|||! .!.!!!|||||||||!.!||| !:!: |||||| !.! !.! luIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPh 285867 : agatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTT : 285923 142 : eLeuMetCysIleLeuIleTrpLeuLeuMetIleLeuProArgPheGlyIleThrIle : 160 !:!! ! ! ! !.!!!::! ! !! !:!::!!||| !! ! !:!! !! eMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThr 285924 : CATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACG : 285980 161 : ArgTyrValMetAsnGlyThrAspAlaLysLysLeuPheProLeuProThrTyrTyrI : 180 ..! !:!! |||! !|||! !...:!! !||||||:!! ! ! !: GluIleIleAspAsnGluThrValArgSerGlnAlaPheProIle---TyrArgGlyL 285981 : GAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATC---TATCGCGGCC : 286037 181 : lePheAspValSerGluThrProTyrPheGluIleThrTyrThrLeuGlnSerIleSe : 199 !!.!!||| ! !! !:!|||! |||||||||..! ! !:!!|||!!!:!::! euLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAl 286038 : TTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGC : 286094 200 : rLeuLeuIleAlaAlaPheCysTyrAlaGlyValAspAsnPhePheGlyIleLeuIle : 218 ! !!!!:!! ! !! ! !!.!|||!.! !!:!!!. !!.!:!:!!!:!! aAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheVal 286095 : CGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTC : 286151 219 : LeuHisIleCysGlyGln : 224 :!!|||:!!||||||||| MetHisValCysGlyGln 286152 : ATGCACGTCTGTGGACAA : 286171 vulgar: AfOr121 0 224 . KQ414889.1 284481 286171 + 109 M 33 99 G 0 6 M 79 237 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 25 75 G 0 3 M 37 111 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284482 286171 109 + . gene_id 3 ; sequence AfOr121 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284482 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284482 284825 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286171 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286171 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284482 286171 109 + . alignment_id 3 ; Query AfOr121 ; Align 284482 1 99 ; Align 284587 34 237 ; Align 285839 114 75 ; Align 285917 139 111 ; Align 286028 177 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr121 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 336 -> 390 Target range: 280294 -> 280456 337 : AlaAlaTyrGluCysGluTrpValSerLeuLysTyrThrLysAlaLysSerLeuIleI : 356 :!!.!!||| ! !!!:||| ! !!||| ! ! !||||||:!!.!!||||||: SerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleL 280295 : TCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATAC : 280352 357 : leIleMetAlaArgSerLysLysProLeuTyrLeuThrAlaGlyLysLeuPheProVa : 375 !:|||.!.||| !|||!!.... !!:!! ! |||||||||||||||:!!.!! !:! euIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLe 280353 : TGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCT : 280409 376 : lThrMetLeuThrPheCysAsnIleLeuLysIleSerLeuSerTyr : 390 !:!!:!: !!:!||||||!:!:!: !! |||!:!||||||||| uSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 280410 : CTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 280456 vulgar: AfOr121 336 390 . KQ414889.1 280294 280456 + 105 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280295 280456 105 + . gene_id 4 ; sequence AfOr121 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280295 280456 . + . KQ414889.1 exonerate:protein2genome:local exon 280295 280456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280295 280456 105 + . alignment_id 4 ; Query AfOr121 ; Align 280295 337 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr117 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 193 -> 298 Target range: 1677566 -> 1677887 194 : PhePheTyrGlnIleIleSerAlaSerIleCysAlaAlaValIleSerGlyLeuAs : 212 ...||| ||||||.!! !..!! ! !! ! ! ! !! !|||!!!|| IlePheProGlnIlePheLeuCysMetTyrLeuLeuLeuCysTyrIleGlyPheAs 1677567 : atttttccacaGATTTTCCTCTGCATGTACTTGTTGCTATGCTACATCGGTTTCGA : 1677621 213 : pThrSerLeuMetThrIleIleLeuHisIleSerGlyGlnPheLysLeuIleAsnI : 231 |.!!||| ! ..!:!:|||:!!||| :!!!.! !!|||!:!:!!:!!..! pAlaSerAlaCysValLeuIleIleHisAlaAlaAla***PheArgIleLeuGlyA 1677622 : CGCGTCAGCGTGTGTGCTGATAATACACGCGGCCGCATAATTCAGAATACTTGGCC : 1677678 232 : leTrpIleAsnAsnIleGlyIleGlu<-><->IleAsnCysAsnProAsnTyrIle : 247 ! !:!:::: !!||| !! !||| !:!! .!. !!:! rgLeuLeuSerTyrIlePheThrGluGluLeuTyrAspLysGluIleSerIleGln 1677679 : GACTGCTGTCATATATTTTCACCGAGGAACTTTACGATAAAGAGATTAGCATACAG : 1677732 248 : ArgLysLeuLysIleAspLeuIleLysCysIleArgHisHisGlnGlnIleIleHi : 266 !:!:!!:!!..! ... ||||||:!:|||!..||| ! !:!!||| ! LysGlnMetSerGlnLysPheGluLysCysLeuArgArgHisTyrLeuLeuIleAs 1677733 : AAGCAAATGTCGcagaaattcgagaaatgcTTGCGTCGACACTATTTGCTCATTGA : 1677789 267 : sValValAsnAsnValAsnAsnLeuPheThrProIleIlePheIleGlnLeuLeuT : 285 ! !|||.!....:::||||||||||||! ! !! !:!!.!.:!!|||:!!:!!| pTyrValGluGluLeuAsnAsnLeuPheLysTyrThrLeuLeuLeuGlnMetMetT 1677790 : CTACGTAGAGgaattgaataatttgttCAAATACACCCTTCTGTTACAGATGATGA : 1677846 286 : hrSerGlyIleGluIleCysLeuSerGlyTyrAlaValLeu : 298 |||||.!!:!: !||||||:!!|||||||||! ! !||| hrSerSerLeuLeuIleCysMetSerGlyTyrGluCysLeu 1677847 : CCTCGAGTTTGTTAATCTGTATGTCTGGTTACGAATGTTTA : 1677887 vulgar: AfOr117 193 298 . KQ414915.1 1677566 1677887 + 110 M 46 138 G 0 6 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1677567 1677887 110 + . gene_id 1 ; sequence AfOr117 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1677567 1677887 . + . KQ414915.1 exonerate:protein2genome:local exon 1677567 1677887 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1677567 1677887 110 + . alignment_id 1 ; Query AfOr117 ; Align 1677567 194 138 ; Align 1677711 240 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr105 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 150 -> 242 Target range: 1629 -> 1902 151 : SerLeuLeuThrPheLeuValIlePheLeuSerLeuProLeuCysAsnProIleLeuAspIl : 171 !:! !:!!..!! !:!!:!!:!:|||:!!||| !|||:!! ! !||||||||||| AsnAlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIl 1630 : AACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACAT : 1690 172 : eIleLeuProLeuAsnGluThrArgProArgGlnAsnIlePheAsnValAsnTyrIleIleL : 192 |:!!|||||| !||||||:!!||| ! ! ! !!|||!:! !.! ||| !.!! eLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAla---TyrTyrPheT 1691 : TTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCC---TATTATTTCA : 1750 193 : euAspAsnTyrGluTyrPheTyrIleValTyrValHisLeuSerCysSerAlaAlaIleIle : 212 !|||.!.:!!:!!||| ! !:!! !..!|||:!!:!!! ! ! ! !:!::!: hrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValVal 1751 : CCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTG : 1810 213 : ValIleIleIleIleSerValAspSerLeuTyrIleSerIleIleTyrHisAlaCysGlyLe : 233 !! !:!: !.!!:!! !|||!!! !||||||! !:!!:!: ! |||!.!|||||||| PheTyrValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLe 1811 : TTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATT : 1873 234 : uPheAlaAlaCysGlyTyrGlnIleGln : 242 |!!.|||!.!! !||| :::|||::: uLeuAlaValSerGly***LysIleArg 1874 : GTTGGCCGTGTCCGGgtaaaaaattcga : 1902 vulgar: AfOr105 150 242 . KQ414921.1 1629 1902 + 132 M 37 111 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1630 1902 132 + . gene_id 1 ; sequence AfOr105 ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1630 1902 . + . KQ414921.1 exonerate:protein2genome:local exon 1630 1902 . + . insertions 0 ; deletions 1 KQ414921.1 exonerate:protein2genome:local similarity 1630 1902 132 + . alignment_id 1 ; Query AfOr105 ; Align 1630 151 111 ; Align 1741 189 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 271 Query range: 284 -> 389 Target range: 2943 -> 3320 285 : IleValLeuAlaPheThrGlyThrPheValLysLeuSerSerMetGluValAsnValArgPh : 305 :!::!!:!! ! ||| !.!!!:: !:!!:!!|||!:! !|||:!!|||!.!..!|| LeuIleIleLeuArgThrIleAlaTrpLysGlnValSerAsnSerGluIleAsnAlaGluPh 2944 : CTGATCATCCTCAGAACAATTGCTTGGAAACAGGTGTCGAACTCGGAGATTAACGCGGAGTT : 3004 306 : ePheThrPheCysAlaPheThrValGlyGlnLeuThrHisLeuPhePheLeuThrIleMetG : 326 | !! ! !|||.!!|||! !||| !||||||..!|||:!!.!!!:!||||||:!!...| eAlaLysAspCysThrPheIleValIleGlnLeuValHisIleLeuTyrLeuThrLeuGlnG 3005 : TGCCAAGGATTGCACATTTATCGTGATTCAATTGGTACACATACTTTACCTAACTCTTCAAG : 3067 327 : lyGlnPheLeuIleAsnAlaAsnAspGluIlePheLysThr{Va} >>>> Target Int : 340 ||||||||:!!|||:!!||||||!!:|||||||||:!!:!!{:!} 62 bp lyGlnPheValIleAspAlaAsnGluGluIlePheGluSer{Il}++ 3068 : GACAATTCGTGATCGACGCGAACGAGGAAATCTTCGAATCG{AT}gt............... : 3113 341 : ron 1 >>>> {l}TyrGluAlaTyrTrpTyrAsnGlySerSerArgThrGlnSerLeuTy : 356 {!}|||...|||! |||||||||.!!..!!.!|||||||||||||||!: ++{e}TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPh 3114 : ..........ag{A}TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTT : 3219 357 : rIleLeuValLeuArgLysCysLeuSerProProLysLeuThrGlyGlyGlyLeuValAlaL : 377 !:!!|||!.!||||||!!.||||||||| !!|||:!!:!!|||!.!|||||||||:!!.!!: eValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrM 3220 : TGTATTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAA : 3282 378 : euAsnLeuAspSerPheLeuGlnIleLeuLysAlaSer : 389 !!||||||.!.||||||! !:!!:!! !::::!!||| etAsnLeuGlnSerPheSerGluValThrArgSerSer 3283 : TGAACTTGCAAAGTTTCTCAGAGGTAACACGTTCATCG : 3320 vulgar: AfOr111 284 389 . KQ414921.1 2943 3320 + 271 M 55 165 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 2944 3320 271 + . gene_id 1 ; sequence AfOr111 ; gene_orientation + KQ414921.1 exonerate:protein2genome:local cds 2944 3110 . + . KQ414921.1 exonerate:protein2genome:local exon 2944 3110 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 3111 3112 . + . intron_id 1 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 3111 3172 . + . intron_id 1 KQ414921.1 exonerate:protein2genome:local splice3 3171 3172 . + . intron_id 0 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 3173 3320 . + . KQ414921.1 exonerate:protein2genome:local exon 3173 3320 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 2944 3320 271 + . alignment_id 1 ; Query AfOr111 ; Align 2944 285 165 ; Align 3174 341 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 226 Query range: 136 -> 246 Target range: 1626 -> 1956 137 : ValSerIlePhePheCysGlyPheMetPheLeuLeuIleProSerIleProProIleLeuAs : 157 |||!:! .!! !!|||! !.!!:!!|||:!!! !! ||| !! !|||! !||||||:! ValAsnAlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAs 1627 : GTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGA : 1687 158 : nIleIleSerProLeuAsnValSerArgGlyArgGluLeuIleTyrProSerTyrTyrPheV : 178 !|||:!! !||| !|||! !||||||! ! !! !! !|||||||||:!!|||||||||. pIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheT 1688 : CATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCA : 1750 179 : alAspGluGluLysTyrTyrTyrProIleLeuMetHisMetIleAlaValAlaLeuIleLeu : 198 .!||||||.!.|||||| !! !|||:!!! !|||||| :!!||| !|||:!::!! hrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValVal 1751 : CCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTG : 1810 199 : ThrSerValTyrValAlaCysAspThrTyrLeuValTyrIleValHisHisGlyCysAlaLe : 219 !! !|||||| !!|||||||||||| !! !:!!|||:!!|||!!.|||||||||!.!|| PheTyrValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLe 1811 : TTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATT : 1873 220 : uLeuAlaIleSerGlyTyrArgPheLysHisAlaValAspAspIleLysLeuCysGlyGluA : 240 |||||||:!:|||||| :::...::: ... ! :!!!!.! !! !.!!! : uLeuAlaValSerGly***LysIleArgSerAsnAspSer***LeuAsnProPheSerAlaA 1874 : GTTGGCCGTGTCCGGgtaaaaaattcgatcgaacgattCGTAGCTCAACCCTTTCAGTGCCA : 1936 241 : spTyrIleAspSerLeuMet : 246 !! ! ||||||!!!|||!!: snLysIleAspThrLeuIle 1937 : ACAAAATCGATACGCTAATT : 1956 vulgar: AfOr111 136 246 . KQ414921.1 1626 1956 + 226 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1627 1956 226 + . gene_id 2 ; sequence AfOr111 ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1627 1956 . + . KQ414921.1 exonerate:protein2genome:local exon 1627 1956 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1627 1956 226 + . alignment_id 2 ; Query AfOr111 ; Align 1627 137 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 457 Query range: 118 -> 388 Target range: 1602 -> 3428 119 : ValPhePheIleLeuIleTyrValValAsnAlaTyrPheCysSerIleLeuPheLeuLeuLe : 139 ..!!:!.!!:!! ! !! :!!||||||||| ! !!||| !|||||||||:!!! ! ThrTyrIleValLysTyrSerIleValAsnAlaIleValCysValIleLeuPheValSerTh 1603 : ACGTACATTGTCAAATATTCGATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGAC : 1663 140 : uProPheThrProIleLeuLeuAspIlePheIleProLeuAsnGluSerArgProArgValG : 160 !||| ! |||||| !:!!|||||||||!!.:!!||| !|||||||||||| ! !!.! rProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaT 1664 : GCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGT : 1726 161 : lnMetTyrProAlaTyrTyrTyrIleGluAsnGluAlaAspTyrTyrTyrProIleLeuIle : 180 ! !!:|||||||||||||||!:!! !!!: ||| ! ! ||| !! !|||:!!! yrIleTyrProAlaTyrTyrPheThrAsp---GluHisLysTyrAspValTyrIleIleThr 1727 : ACATTTACCCGGCCTATTATTTCACCGAC---GAGCATAAGTACGACGTGTACATAATTACG : 1783 181 : PheSerIleValSerLeuLeuThrAlaMetCysValPheIleAlaThrAspThrMetLeuIl : 201 !! ! ! !:!!|||..!!.!.!.! !|||!:!.!!||| !||||||! ! !|| HisMetAlaSerValIleLeuValValPheTyrValTyrPheAlaCysAspThrSerTyrIl 1784 : CACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACAT : 1846 202 : eTyrIleValGlnHisAlaCysGlyLeuLeuAlaLeuAla{Gl} >>>> Target Intr : 215 ||||:!!|||||||||!.!|||||||||||||||:!!:!!{||} 265 bp eTyrValValGlnHisGlyCysGlyLeuLeuAlaValSer{Gl}++ 1847 : ATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCC{GG}gt................ : 1892 216 : on 1 >>>> {y}HisArgPheArgAsnSerLeuAsnAspLeuTyrSerSerArgLysAsp : 231 {|}:!!|||!:!!:! !:!!:!! !!:|||! !||| !!!:!!:!:!! ++{y}TyrArgTyrLysCysAlaIleValGluLeuSerSerArgLysArgAsn 1893 : .........ag{A}TATCGTTACAAATGTGCGATCGTGGAATTGTCCAGTCGGAAAAGGAAC : 2201 232 : SerLysValAspGlyLysIleTyrArgArgLeuCysTyrAlaIleLysThrHisLysArgAl : 252 ||| ..!.!.! !:!!||||||||||||:!!|||:!!:!!|||:!! !|||:!!!.!|| SerValThrGlnAspGluIleTyrArgArgValCysHisSerIleGlnGlyHisGlnHisAl 2202 : AGTGTCACGCAGGATGAAATTTATAGAAGAGTGTGTCATTCGATTCAAGGACACCAGCATGC : 2264 253 : aLeu<->AlaTyrLeuAlaGluIleGluAspPheTyrSerValAsnIlePheMetGlnValG : 272 |:!! ::: ||| :::|||......... ::: ... . aIleLysSerValLeuLysLysIleArgGlnIleValLeuAsnValLeuCysPhePheSerS 2265 : TATAAAGtcggtattaaaaaagatacgtcaaattgttttaaatgttctttgctttttttctA : 2327 273 : lyAlaSerIleLeuCys{Le} >>>> Target Intron 2 >>>> {u}ThrValThr : 281 !! !! !:!!||| !!{! } 611 bp {!}|||:!!.!! erMetLeuLeuLeuArg{Pr}++ ++{o}ThrIleAla 2328 : GCATGTTACTATTACGC{CC}gt.........................ag{A}ACAATTGCT : 2965 282 : MetMetLysIleAlaThrIleThrTrpSerMetGluThrAsnGlnTyrTyrGlyTyrValIl : 302 !! :!!:!::!!!.! ! !:! !||| ! !:!! !!! ! !!:!:!!:! TrpLysGlnValSerAsnSerGluIleAsnAlaGluPheAlaLysAspCysThrPheIleVa 2966 : TGGAAACAGGTGTCGAACTCGGAGATTAACGCGGAGTTTGCCAAGGATTGCACATTTATCGT : 3028 303 : eAlaGlnValValHisIlePhePheLeuThrAlaGlnGlyGlnPheValIleAspSerHisG : 323 : !|||:!!|||||||||.!!!:!|||||| !|||||||||||||||||||||:!!:!!| lIleGlnLeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAspAlaAsnG 3029 : GATTCAATTGGTACACATACTTTACCTAACTCTTCAAGGACAATTCGTGATCGACGCGAACG : 3091 324 : luAsnValTyrTrpAsp{Me} >>>> Target Intron 3 >>>> {t}TyrGluPro : 332 ||.!.:!!!:! ...{!!} 62 bp {:}|||... !! luGluIlePheGluSer{Il}++ ++{e}TyrSerAla 3092 : AGGAAATCTTCGAATCG{AT}gt.........................ag{A}TACAGCGCT : 3180 333 : TyrTrpTyrAsnLeuGlnSerLysMetGlnAlaMetPheValLeuIleLeuArgArgAsnLe : 353 ! ||||||||| !.!.!.!!:!! !|||:!!:!!||||||||| ||||||!.! !|| LeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeuArgAsnCysLe 3181 : TTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGTTAAGAAATTGTCT : 3243 354 : uAsnProProLeuLeuThrAlaGlyGlyLeuValGlnLeuAsnLeuAsnThrPheAlaLys : 374 |::! !!|||! !:!!|||||||||||||||:!! !:!!||||||.!.!:!|||:!!:!! uSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGlnSerPheSerGlu+ 3244 : ATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAAAGTTTCTCAGAGg : 3306 375 : >>>> Target Intron 4 >>>> ValValLysThrSerValSerTyrPheThrValL : 385 78 bp :!!|||||||||||||||||||||!:!! !|||| + ++IleValLysThrSerValSerTyrTyrMetValL 3307 : t.........................agATTGTAAAGACGTCTGTCTCGTACTACATGGTAC : 3417 386 : euLysSerVal : 388 ||||||||||| euLysSerVal 3418 : TGAAATCCGTA : 3428 vulgar: AfOr106 118 388 . KQ414921.1 1602 3428 + 457 M 51 153 G 1 0 M 44 132 S 0 2 5 0 2 I 0 261 3 0 2 S 1 1 M 38 114 G 0 3 M 24 72 S 0 2 5 0 2 I 0 607 3 0 2 S 1 1 M 50 150 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 44 132 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1603 3428 457 + . gene_id 1 ; sequence AfOr106 ; gene_orientation + KQ414921.1 exonerate:protein2genome:local cds 1603 1889 . + . KQ414921.1 exonerate:protein2genome:local exon 1603 1889 . + . insertions 0 ; deletions 1 KQ414921.1 exonerate:protein2genome:local splice5 1890 1891 . + . intron_id 1 ; splice_site "gt" KQ414921.1 exonerate:protein2genome:local intron 1890 2154 . + . intron_id 1 KQ414921.1 exonerate:protein2genome:local splice3 2153 2154 . + . intron_id 0 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 2155 2346 . + . KQ414921.1 exonerate:protein2genome:local exon 2155 2346 . + . insertions 3 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 2347 2348 . + . intron_id 2 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 2347 2957 . + . intron_id 2 KQ414921.1 exonerate:protein2genome:local splice3 2956 2957 . + . intron_id 1 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 2958 3110 . + . KQ414921.1 exonerate:protein2genome:local exon 2958 3110 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 3111 3112 . + . intron_id 3 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 3111 3172 . + . intron_id 3 KQ414921.1 exonerate:protein2genome:local splice3 3171 3172 . + . intron_id 2 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 3173 3305 . + . KQ414921.1 exonerate:protein2genome:local exon 3173 3305 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 3306 3307 . + . intron_id 4 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 3306 3383 . + . intron_id 4 KQ414921.1 exonerate:protein2genome:local splice3 3382 3383 . + . intron_id 3 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 3384 3428 . + . KQ414921.1 exonerate:protein2genome:local exon 3384 3428 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1603 3428 457 + . alignment_id 1 ; Query AfOr106 ; Align 1603 119 153 ; Align 1756 171 132 ; Align 2156 216 114 ; Align 2273 254 72 ; Align 2959 279 150 ; Align 3174 330 132 ; Align 3384 374 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 454 Query range: 141 -> 380 Target range: 1665 -> 3320 142 : ProMetValProProIleLeuAspIleIleMetProLeuAsnValSerArgLysArgIleLe : 162 |||:!!..!|||! !||||||||||||:!!:!:||| !|||! !|||||| ! ! ! ProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTy 1666 : CCGGTGACACCGCATATTTTGGACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTA : 1726 163 : uLeuTyrProAlaTyrPheTrpLeuAspAspGluLysTyrTyrValLeuLeuLeuGlyHisM : 183 !:!!||||||||||||!:!!:: !|||!!:.!.|||||| !!|||! !:!!:!! !|||| rIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisM 1727 : CATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACA : 1789 184 : etIleIleThrIleLeuMetIleCysPheIlePheCysAlaCysAspMetAsnTyrValTyr : 203 || !..!||||||:!!:!:! !!:!:!:!:!! !|||||||||! !:!|||:!!||| etAlaSerValIleLeuValValPheTyrValTyrPheAlaCysAspThrSerTyrIleTyr 1790 : TGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACATATAC : 1849 204 : AlaValGlnHisAlaCysGlyLeuLeuAlaIleAla{Ly} >>>> Target Intron 1 : 216 !.!|||||||||!.!|||||||||||||||:!::!!{ } 265 bp ValValGlnHisGlyCysGlyLeuLeuAlaValSer{Gl}++ 1850 : GTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCC{GG}gt.................... : 1892 217 : >>>> {s}TyrArgPheLysAsnValCysLysAspLeuAsnAspLysGluAspHisAlaM : 234 {!}||||||!:!||| !!.! ! !!!:|||::!..!::!:!! :!!::!: ++{y}TyrArgTyrLysCysAlaIleValGluLeuSerSerArgLysArgAsnSerV 1893 : .....ag{A}TATCGTTACAAATGTGCGATCGTGGAATTGTCCAGTCGGAAAAGGAACAGTG : 2207 235 : etProLeuGluLysIleLysTyrLysSerIleCysGluSerIleLysAlaHisGlnHisAla : 254 !: !!! !!!::!!||| |||!:!!!!:!:|||.!.||||||:!!!.!|||||||||||| alThrGlnAspGluIle---TyrArgArgValCysHisSerIleGlnGlyHisGlnHisAla 2208 : TCACGCAGGATGAAATT---TATAGAAGAGTGTGTCATTCGATTCAAGGACACCAGCATGCT : 2264 255 : LeuLys<->TyrLeuArgLeuIleGluAsnSerTyrHisThrTyrLeuPheValSerMetGl : 274 :!!||| |||::: |||...... ... ||| .! IleLysSerValLeuLysLysIleArgGlnIleValLeuAsnValLeuCysPhePheSerSe 2265 : ATAAAGtcggtattaaaaaagatacgtcaaattgttttaaatgttctttgctttttttctAG : 2327 275 : yLeuLeuIleMetAla{Il} >>>> Target Intron 2 >>>> {e}SerValSerL : 284 !:!!|||:!!:!: !{ } 611 bp {!}!!!:!!:!!! rMetLeuLeuLeuArg{Pr}++ ++{o}ThrIleAlaT 2328 : CATGTTACTATTACGC{CC}gt.........................ag{A}ACAATTGCTT : 2968 285 : euLeuGluValAlaAsnGlyLysAsnGlySerArgLysLeuValGlnAlaThrPheLeuPhe : 304 ! !:!!|||:!!|||..!:!!! !..!:!!..! ! !.!...!||||||:!! ! rpLysGlnValSerAsnSerGluIleAsnAlaGluPheAlaLysAspCysThrPheIleVal 2969 : GGAAACAGGTGTCGAACTCGGAGATTAACGCGGAGTTTGCCAAGGATTGCACATTTATCGTG : 3028 305 : AlaGlnLeuPheHisThrPheIleLeuThrValGlnGlyGlnPheValIleAsnGluLeuGl : 325 !|||||| ! |||! !.!! !||||||:!!||||||||||||||||||:!!! ! !:! IleGlnLeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAspAlaAsnGl 3029 : ATTCAATTGGTACACATACTTTACCTAACTCTTCAAGGACAATTCGTGATCGACGCGAACGA : 3091 326 : nAspValTyrGluSer{Il} >>>> Target Intron 3 >>>> {e}TyrGluSerP : 335 !!!::!!!:!||||||{||} 62 bp {|}|||...:!! uGluIlePheGluSer{Il}++ ++{e}TyrSerAlaL 3092 : GGAAATCTTCGAATCG{AT}gt.........................ag{A}TACAGCGCTT : 3183 336 : roTrpTyrThrPheSerProArgIleArgSerLeuTyrValLeuSerLeuArgSerCysLeu : 355 !||||||!.! !..! !|||! !:!||||||!:!||||||:!!||||||!:!|||||| euTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeuArgAsnCysLeu 3184 : TGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGTTAAGAAATTGTCTA : 3243 356 : AsnPheProIleLeuThrAlaGlyGlyLeuIleValLeuAsnLeuGlnSerPheAlaGluIl : 376 ::! !||| !:!!||||||||||||||||||..!:!!|||||||||||||||:!!|||:! SerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGlnSerPheSerGluVa 3244 : TCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAAAGTTTCTCAGAGGT : 3306 377 : eIleLysAlaAla : 380 !! !::::!!:!! lThrArgSerSer 3307 : AACACGTTCATCG : 3320 vulgar: AfOr112_1 141 380 . KQ414921.1 1665 3320 + 454 M 74 222 S 0 2 5 0 2 I 0 261 3 0 2 S 1 1 M 23 69 G 1 0 M 16 48 G 0 3 M 23 69 S 0 2 5 0 2 I 0 607 3 0 2 S 1 1 M 50 150 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1666 3320 454 + . gene_id 1 ; sequence AfOr112_1 ; gene_orientation + KQ414921.1 exonerate:protein2genome:local cds 1666 1889 . + . KQ414921.1 exonerate:protein2genome:local exon 1666 1889 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 1890 1891 . + . intron_id 1 ; splice_site "gt" KQ414921.1 exonerate:protein2genome:local intron 1890 2154 . + . intron_id 1 KQ414921.1 exonerate:protein2genome:local splice3 2153 2154 . + . intron_id 0 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 2155 2346 . + . KQ414921.1 exonerate:protein2genome:local exon 2155 2346 . + . insertions 3 ; deletions 1 KQ414921.1 exonerate:protein2genome:local splice5 2347 2348 . + . intron_id 2 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 2347 2957 . + . intron_id 2 KQ414921.1 exonerate:protein2genome:local splice3 2956 2957 . + . intron_id 1 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 2958 3110 . + . KQ414921.1 exonerate:protein2genome:local exon 2958 3110 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 3111 3112 . + . intron_id 3 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 3111 3172 . + . intron_id 3 KQ414921.1 exonerate:protein2genome:local splice3 3171 3172 . + . intron_id 2 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 3173 3320 . + . KQ414921.1 exonerate:protein2genome:local exon 3173 3320 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1666 3320 454 + . alignment_id 1 ; Query AfOr112_1 ; Align 1666 142 222 ; Align 2156 217 69 ; Align 2225 241 48 ; Align 2276 257 69 ; Align 2959 281 150 ; Align 3174 332 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr121 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 162 -> 285 Target range: 806451 -> 806823 163 : ValMetAsnGlyThrAspAlaLysLysLeuPheProLeuProThrTyrTyrIlePheA : 182 |||! !....! ! |||::: ::: ||| !!|||:!!! !:!:|||! ValAsnThrAsnAspThrAlaArgLeuAsnTyrPheLeuAlaThrHisCysValPheG 806452 : GTGAACACGAACGATACAGCGagattgaattatttcttgGCCACGCACTGCGTGTTCG : 806509 183 : spValSerGluThrProTyrPheGluIleThrTyrThrLeuGlnSerIleSerLeuLe : 201 ! !! ! ! !! !:!! !! !..!! !||||||.!!!!: !:!!!! lyProLeuProLeuGlnHisHisValCysValLeuLeuLeuGlnGlyMetHisIlePh 806510 : GCCCTTTACCGTTGCAGCATCACGTCTGCGTGTTACTGCTGCAAGGGATGCACATTTT : 806566 202 : uIleAlaAlaPheCysTyrAlaGlyValAspAsnPhePheGlyIleLeuIleLeuHis : 220 !.!! !||| ! ..!:!!..!||| !|||..!.!!||| !! !|||! :!!||| ePheAsnAlaValAlaHisCysGlyAsnAspGlyLeuPhePheSerLeuThrMetHis 806567 : CTTCAACGCCGTGGCTCACTGCGGCAACGACGGCCTCTTCTTCAGCCTGACGATGCAT : 806623 221 : IleCysGlyGlnLeuThrAsnLeuArgPheGlnLeuAlaAsnMetLys<->GluSerG : 239 :!:|||||||||!!! !! !|||!:!.!..!.||||||.!.!!::!! |||:!! LeuCysGlyGlnPheGluIleLeuLysMetAsnLeuAlaGluIleGluPheGluAlaI 806624 : CTGTGCGGTCAGTTTGAAATTCTGAAGATGAATCTGGCGGAGATCGAGTTCGAGGCGA : 806683 240 : luThrSerAsnPheValLeuIleAlaIleValLysAspHisIleArgLeuIleArgAl : 258 .!!!!!... !:!! !!.!:!!|||||| ||| !!:!||| ! leAlaCysArgLysArgIleGlyValLeuValLysArgHisCysLysLeuAlaValLe 806684 : TCGCTTGTCGGAAGCGAATCGGCGTTCTCGTGAAACGACACTGCAAACTGGCGGTGTT : 806740 259 : aAlaAsnValIleGluAsnThrSerThrLeuLeuPheLeuIleLeuLeuLeuAsnPhe : 277 !.!!|||! !:!!|||.!.!:!! !!:!:!!:!!.!!|||:!:! !|||:!!! ! uThrAsnAspLeuGluGlnSerPheSerMetIleIleLeuValGlnLeuMetMetSer 806741 : GACCAACGATCTCGAGCAGAGCTTCAGTATGATTATTCTGGTGCAACTCATGATGAGT : 806797 278 : GlyIleCysThrCysIleTyrGly : 285 !.!:!: ! !|||:!! ! ||| AlaLeuLeuIleCysValGluGly 806798 : GCGTTGCTAATTTGCGTAGAAGGT : 806823 vulgar: AfOr121 162 285 . KQ414940.1 806451 806823 + 106 M 74 222 G 0 3 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806452 806823 106 + . gene_id 1 ; sequence AfOr121 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 806452 806823 . + . KQ414940.1 exonerate:protein2genome:local exon 806452 806823 . + . insertions 3 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 806452 806823 106 + . alignment_id 1 ; Query AfOr121 ; Align 806452 163 222 ; Align 806677 237 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 291 -> 397 Target range: 807263 -> 807581 292 : ThrPheValLysLeuSerSerMetGluValAsnValArgPhePheThrPheCysAlaP : 311 ..!|||:!! ! !|||! !:!!! !|||||| ! !!.! ! !! !!.!. ValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValL 807264 : GTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTC : 807321 312 : heThrValGlyGlnLeuThrHisLeuPhePheLeuThrIleMetGlyGlnPheLeuIl : 330 !.! !||| ! !|||! !!!.|||!:!.!!! !.!! ! !|||.!. ||| euMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGl 807322 : TGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGA : 807378 331 : eAsnAlaAsnAspGluIlePheLysThrValTyrGluAlaTyrTrpTyrAsnGlySer : 349 ::: !!.!!!:|||||| :!!.!!!.!|||!!::!! !||||||..! !! ! uSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHis 807379 : GTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCAC : 807435 350 : SerArgThrGlnSerLeuTyrIleLeuValLeuArgLysCysLeuSerProProLysL : 369 .!!!.!.!! !!! ! !:!!|||:!!:!!!.!::! ! !|||||| !:::: GlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgI 807436 : GGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTA : 807495 370 : euThrGlyGlyGlyLeuValAlaLeuAsnLeuAspSerPheLeuGlnIleLeuLysAl : 388 !!|||!.!||| !!!!||| !!:!!|||||| !!!!||| !:!!||||||||||| leThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAl 807496 : TAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGC : 807552 389 : aSerPheSerTyrTyrThrValPheArg : 397 |||| !|||||| :!!|||.!.!:! aSerGlySerTyrLeuSerValMetLys 807553 : TTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: AfOr111 291 397 . KQ414940.1 807263 807581 + 124 M 106 318 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807264 807581 124 + . gene_id 1 ; sequence AfOr111 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807264 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807264 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807264 807581 124 + . alignment_id 1 ; Query AfOr111 ; Align 807264 292 318 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 119 -> 215 Target range: 32464 -> 32749 120 : PhePheIleLeuIleTyrValValAsnAlaTyrPheCysSerIleLeuPheLeuLeuLeu : 139 ||||||...|||||| !..!! ! !!.!|||.!! ! ! !.!!! !!:! !:!!:!! PhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIleVal 32465 : ttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATAGTG : 32522 140 : ProPheThrProIleLeuLeuAspIlePheIleProLeuAsnGluSerArgProArgVal : 159 ! !||| !||| !:!!:!!|||:!:.!. ||||||||||||||||||! !!.!||| GlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHisVal 32523 : CAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTA : 32582 160 : GlnMetTyrProAlaTyrTyrTyrIleGluAsnGluAlaAspTyrTyrTyrProIleLeu : 179 ! ! !||| !!!.! ! |||!:!:!!!!:...::: |||::: |||||| ! LeuProTyrAlaGlyGluTyrPheValAspGlnGln---LysTyrPheLeuProIleAla 32583 : CTGCCGTACGCCGGCGAATATTTCGTCGACcagcaa---aaatatttcctaccAATCGCG : 32639 180 : IlePheSerIleValSerLeuLeuThrAlaMetCysValPheIleAlaThrAspThrMet : 199 :!: !! !:!!! !!!!:!! ! !!.!:!! ||| !! |||...|||:::::: LeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIle 32640 : TTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaatt : 32699 200 : LeuIleTyrIleValGlnHisAlaCysGlyLeuLeuAlaLeuAlaGly : 215 ...|||:::...::! |||!.!|||!.! !!!! !:!! !||| PheIlePhePheMetPheHisValCysAlaLysPheAsnIleLeuGly 32700 : ttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATTCTCGGG : 32749 vulgar: AfOr106 119 215 . KQ415081.1 32464 32749 + 127 M 52 156 G 1 0 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32465 32749 127 + . gene_id 1 ; sequence AfOr106 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32465 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32465 32749 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32465 32749 127 + . alignment_id 1 ; Query AfOr106 ; Align 32465 120 156 ; Align 32621 173 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 143 -> 224 Target range: 32506 -> 32749 144 : PheMetPheLeuLeuIleProSerIleProProIleLeuAsnIleIleSerProLeuAsn : 163 ||| !:! !:!!:!:! !! !:!:||| !|||:!!:!!:!:|||:!!||||||||| PheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsn 32507 : TTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAAC : 32564 164 : ValSerArgGlyArgGluLeuIleTyrProSerTyrTyrPheValAspGluGluLysTyr : 183 ! !|||||| !!.!! !||| ||| !!.!! ! ||||||||||||::::::|||||| GluSerArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyr 32565 : GAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatat : 32624 184 : TyrTyrProIleLeuMetHisMetIleAlaValAlaLeuIleLeuThrSerValTyrVal : 203 ::: |||||| !:!!||||||:!!!.!..!!.! !:!! ! !!!!||| !..! PheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThr 32625 : ttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACG : 32684 204 : AlaCysAspThrTyrLeuValTyrIleValHisHisGlyCysAlaLeuLeuAlaIleSer : 223 ||| |||::: ...::::::...::! !|||! !|||||| !!!! !||| ! AlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIleLeu 32685 : GCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATTCTC : 32744 224 : Gly : 224 ||| Gly 32745 : GGG : 32749 vulgar: AfOr111 143 224 . KQ415081.1 32506 32749 + 159 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32507 32749 159 + . gene_id 1 ; sequence AfOr111 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32507 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32507 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32507 32749 159 + . alignment_id 1 ; Query AfOr111 ; Align 32507 144 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr131like_3 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 282 -> 359 Target range: 24969 -> 26827 283 : ArgLeuValSerAlaIleIleAlaAsnLysAspGlnLeuGluIleLeuIleSerLeuIle : 302 !:!||| !!..! !:!!!!: !! |||..! ! !|||:!!:!!||| !!|||.!! GlnLeuPheAspLysLeuMetProLeuLysSerValAsnGluValValIleProLeuPhe 24970 : CAGCTCTTCGACAAATTAATGCCATTGAAAAGTGTGAACGAGGTTGTCATTCCGCTGTTT : 25027 303 : PhePheThrAsnGlnLeuValValValPheLeuAsnAsnHisAsnSerGlnIlePheIle : 322 ! !! ! |||||||||||||||||||||! :!! :!!|||!!: ! !!: HisValTrpAlaPheLeuValValValPheLeuAsnIleTyrProAlaGlnMetValMet 25028 : CACGTCTGGGCGTTTCTGGTGGTAGTGTTTTTGAACATATATCCGGCACAGATGGTGATG : 25087 323 : AsnAsnAsnGluGluPhePheHisGlu{Le} >>>> Target Intron 1 >>>> : 332 :!!!..!:!|||! .!.|||:!!:!!{ } 1627 bp AspThrSerGluValIlePheTyrGln{Al}++ ++ 25088 : GACACAAGCGAGGTCATATTCTATCAA{GC}gt.........................ag : 26744 333 : {u}TyrIleSerValTrpTyrPheValProLeuLysValGlnLysIleLeuLeuLeuIle : 351 {!}||| !.!! !|||||| !.!||| !::!!.!||||||:!:|||||||||:!: {a}TyrTyrGlySerTrpTyrAlaAlaProThrArgAlaGlnLysLeuLeuLeuLeuVal 26745 : {G}TATTACGGAAGCTGGTACGCGGCGCCAACGCGGGCACAAAAATTGCTGCTGCTGGTG : 26801 352 : MetThrArgSerSerThrThrCys : 359 :!! !!:!!!!! !..! !!||| LeuGlnLysCysMetValProCys 26802 : TTGCAGAAATGCATGGTGCCTTGT : 26827 vulgar: AfOr131like_3 282 359 . KQ415081.1 24969 26827 + 111 M 49 147 S 0 2 5 0 2 I 0 1623 3 0 2 S 1 1 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 24970 26827 111 + . gene_id 1 ; sequence AfOr131like_3 ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 24970 25118 . + . KQ415081.1 exonerate:protein2genome:local exon 24970 25118 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 25119 25120 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 25119 26745 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 26744 26745 . + . intron_id 0 ; splice_site "AG" KQ415081.1 exonerate:protein2genome:local cds 26746 26827 . + . KQ415081.1 exonerate:protein2genome:local exon 26746 26827 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 24970 26827 111 + . alignment_id 1 ; Query AfOr131like_3 ; Align 24970 283 147 ; Align 26747 333 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 304 Query range: 118 -> 331 Target range: 178 -> 1693 119 : ValPhePheIleLeuIleTyrValValAsnAlaTyrPheCysSerIleLeuPheLeuLeuLe : 139 ..!!:!.!!:!! ! !! :!!||||||||| ! !!||| !|||||||||:!!! ! ThrTyrIleValLysTyrSerIleValAsnAlaIleValCysValIleLeuPheValSerTh 179 : ACGTACATTGTCAAATATTCGATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGAC : 239 140 : uProPheThrProIleLeuLeuAspIlePheIleProLeuAsnGluSerArgProArgValG : 160 !||| ! |||||| !:!!|||||||||!!.:!!||| !|||||||||||| ! !!.! rProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaT 240 : GCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGT : 302 161 : lnMetTyrProAlaTyrTyrTyrIleGluAsnGluAlaAspTyrTyrTyrProIleLeuIle : 180 ! !!:|||||||||||||||!:!! !!!: ||| ! ! ||| !! !|||:!!! yrIleTyrProAlaTyrTyrPheThrAsp---GluHisLysTyrAspValTyrIleIleThr 303 : ACATTTACCCGGCCTATTATTTCACCGAC---GAGCATAAGTACGACGTGTACATAATTACG : 359 181 : PheSerIleValSerLeuLeuThrAlaMetCysValPheIleAlaThrAspThrMetLeuIl : 201 !! ! ! !:!!|||..!!.!.!.! !|||!:!.!!||| !||||||! ! !|| HisMetAlaSerValIleLeuValValPheTyrValTyrPheAlaCysAspThrSerTyrIl 360 : CACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACAT : 422 202 : eTyrIleValGlnHisAlaCysGlyLeuLeuAlaLeuAla{Gl} >>>> Target Intr : 215 ||||:!!|||||||||!.!|||||||||||||||:!!:!!{||} 265 bp eTyrValValGlnHisGlyCysGlyLeuLeuAlaValSer{Gl}++ 423 : ATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCC{GG}gt................ : 468 216 : on 1 >>>> {y}HisArgPheArgAsnSerLeuAsnAspLeuTyrSerSerArgLysAsp : 231 {|}:!!|||!:!!:! !:!!:!! !!:|||! !||| !!!:!!:!:!! ++{y}TyrArgTyrLysCysAlaIleValGluLeuSerSerArgLysArgAsn 469 : .........ag{A}TATCGTTACAAATGTGCGATCGTGGAATTGTCCAGTCGGAAAAGGAAC : 777 232 : SerLysValAspGlyLysIleTyrArgArgLeuCysTyrAlaIleLysThrHisLysArgAl : 252 ||| ..!.!.! !:!!||||||||||||:!!|||:!!:!!|||:!! !|||:!!!.!|| SerValThrGlnAspGluIleTyrArgArgValCysHisSerIleGlnGlyHisGlnHisAl 778 : AGTGTCACGCAGGATGAAATTTATAGAAGAGTGTGTCATTCGATTCAAGGACACCAGCATGC : 840 253 : aLeu{Al} >>>> Target Intron 2 >>>> {a}TyrLeuAlaGluIleGluAspP : 262 |:!!{ } 614 bp {!} :!! !! !! ! !..!! aIle{As}++ ++{n}ValIleLeuValLysValSerS 841 : TATA{AA}gt.........................ag{C}GTGATACTGGTGAAGGTGAGCT : 1484 263 : heTyrSerValAsnIlePheMetGlnValGlyAlaSerIleLeuCysLeuThrValThrMet : 282 !! ..! !.!.:!!!:! !.! !.!! !|||:!! ! !|||:!!:!! ! erSerGluTrpGlnLeuTyrArgValAlaIleThrLeuIleIleLeuLysThrIleSerTrp 1485 : CTTCAGAGTGGCAATTATATCGCGTTGCGATAACGCTGATCATCCTCAAAACAATTTCTTGG : 1544 283 : MetLysIleAlaThrIleThrTrpSerMetGluThrAsnGlnTyrTyrGlyTyrValIleAl : 303 ! :!!:!::!!!.! ! !:! !||| !!.!:!! !!! ! !!:!:!!!!: LysGlnValSerAsnSerGluIleAsnAlaGluPheThrLysAspCysThrPheIleMetIl 1545 : AAACAGGTGTCGAACTCGGAGATTAACGCGGAGTTTACCAAGGATTGCACATTTATCATGAT : 1607 304 : aGlnValValHisIlePhePheLeuThrAlaGlnGlyGlnPheValIleAspSerHisGluA : 324 !|||:!!|||||||||.!!!:!|||||| !|||||||||||||||||||||:!!:!!|||. eGlnLeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAspAlaAsnGluG 1608 : TCAATTGGTACACATACTTTATCTAACTCTTCAAGGACAATTCGTGATCGACGCGAACGAGG : 1670 325 : snValTyrTrpAspMetTyrGlu : 331 !.:!!!:! ...|||!! ||| luIlePheGluSerMet***Glu 1671 : AAATCTTCGAATCGATGTAAGAA : 1693 vulgar: AfOr106 118 331 . LHQN01023902.1 178 1693 + 304 M 51 153 G 1 0 M 44 132 S 0 2 5 0 2 I 0 261 3 0 2 S 1 1 M 38 114 S 0 2 5 0 2 I 0 610 3 0 2 S 1 1 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 179 1693 304 + . gene_id 1 ; sequence AfOr106 ; gene_orientation + LHQN01023902.1 exonerate:protein2genome:local cds 179 465 . + . LHQN01023902.1 exonerate:protein2genome:local exon 179 465 . + . insertions 0 ; deletions 1 LHQN01023902.1 exonerate:protein2genome:local splice5 466 467 . + . intron_id 1 ; splice_site "gt" LHQN01023902.1 exonerate:protein2genome:local intron 466 730 . + . intron_id 1 LHQN01023902.1 exonerate:protein2genome:local splice3 729 730 . + . intron_id 0 ; splice_site "AG" LHQN01023902.1 exonerate:protein2genome:local cds 731 847 . + . LHQN01023902.1 exonerate:protein2genome:local exon 731 847 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local splice5 848 849 . + . intron_id 2 ; splice_site "Gt" LHQN01023902.1 exonerate:protein2genome:local intron 848 1461 . + . intron_id 2 LHQN01023902.1 exonerate:protein2genome:local splice3 1460 1461 . + . intron_id 1 ; splice_site "AG" LHQN01023902.1 exonerate:protein2genome:local cds 1462 1693 . + . LHQN01023902.1 exonerate:protein2genome:local exon 1462 1693 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 179 1693 304 + . alignment_id 1 ; Query AfOr106 ; Align 179 119 153 ; Align 332 171 132 ; Align 732 216 114 ; Align 1463 255 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr105 Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 150 -> 242 Target range: 205 -> 478 151 : SerLeuLeuThrPheLeuValIlePheLeuSerLeuProLeuCysAsnProIleLeuAspIleI : 172 !:! !:!!..!! !:!!:!!:!:|||:!!||| !|||:!! ! !||||||||||||: AsnAlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleL 206 : AACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTT : 269 173 : leLeuProLeuAsnGluThrArgProArgGlnAsnIlePheAsnValAsnTyrIleIleLeuAs : 193 !!|||||| !||||||:!!||| ! ! ! !!|||!:! !.! ||| !.!! !|| euLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAla---TyrTyrPheThrAs 270 : TACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCC---TATTATTTCACCGA : 329 194 : pAsnTyrGluTyrPheTyrIleValTyrValHisLeuSerCysSerAlaAlaIleIleValIle : 214 |.!.:!!:!!||| ! !:!! !..!|||:!!:!!! ! ! ! !:!::!: !! ! pGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyr 330 : CGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTAC : 392 215 : IleIleIleSerValAspSerLeuTyrIleSerIleIleTyrHisAlaCysGlyLeuPheAlaA : 236 :!: !.!!:!! !|||!!! !||||||! !:!!:!: ! |||!.!|||||||||!!.|||! ValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaV 393 : GTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCG : 458 237 : laCysGlyTyrGlnIleGln : 242 .!! !||| :::|||::: alSerGly***LysIleArg 459 : TGTCCGGgtaaaaaattcga : 478 vulgar: AfOr105 150 242 . LHQN01023902.1 205 478 + 132 M 37 111 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 206 478 132 + . gene_id 1 ; sequence AfOr105 ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 206 478 . + . LHQN01023902.1 exonerate:protein2genome:local exon 206 478 . + . insertions 0 ; deletions 1 LHQN01023902.1 exonerate:protein2genome:local similarity 206 478 132 + . alignment_id 1 ; Query AfOr105 ; Align 206 151 111 ; Align 317 189 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 226 Query range: 136 -> 246 Target range: 202 -> 532 137 : ValSerIlePhePheCysGlyPheMetPheLeuLeuIleProSerIleProProIleLeuAsnI : 158 |||!:! .!! !!|||! !.!!:!!|||:!!! !! ||| !! !|||! !||||||:!!| ValAsnAlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspI 203 : GTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACA : 266 159 : leIleSerProLeuAsnValSerArgGlyArgGluLeuIleTyrProSerTyrTyrPheValAs : 179 ||:!! !||| !|||! !||||||! ! !! !! !|||||||||:!!|||||||||..!|| leLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAs 267 : TTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGA : 329 180 : pGluGluLysTyrTyrTyrProIleLeuMetHisMetIleAlaValAlaLeuIleLeuThrSer : 200 ||||.!.|||||| !! !|||:!!! !|||||| :!!||| !|||:!::!! !! ! pGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyr 330 : CGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTAC : 392 201 : ValTyrValAlaCysAspThrTyrLeuValTyrIleValHisHisGlyCysAlaLeuLeuAlaI : 222 |||||| !!|||||||||||| !! !:!!|||:!!|||!!.|||||||||!.!|||||||||: ValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaV 393 : GTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCG : 458 223 : leSerGlyTyrArgPheLysHisAlaValAspAspIleLysLeuCysGlyGluAspTyrIleAs : 243 !:|||||| :::...::: ... ! :!!!!.! !! !.!!! :!! ! ||||| alSerGly***LysIleArgSerAsnAspSer***LeuAsnProPheSerAlaAsnLysIleAs 459 : TGTCCGGgtaaaaaattcgatcgaacgattCGTAGCTCAACCCTTTCAGTGCCAACAAAATCGA : 521 244 : pSerLeuMet : 246 |!!!|||!!: pThrLeuIle 522 : TACGCTAATT : 532 vulgar: AfOr111 136 246 . LHQN01023902.1 202 532 + 226 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 203 532 226 + . gene_id 1 ; sequence AfOr111 ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 203 532 . + . LHQN01023902.1 exonerate:protein2genome:local exon 203 532 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 203 532 226 + . alignment_id 1 ; Query AfOr111 ; Align 203 137 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 284 -> 342 Target range: 1519 -> 1693 285 : IleValLeuAlaPheThrGlyThrPheValLysLeuSerSerMetGluValAsnValArgPh : 305 :!::!!:!! ! ||| !:!!!:: !:!!:!!|||!:! !|||:!!|||!.!..!|| LeuIleIleLeuLysThrIleSerTrpLysGlnValSerAsnSerGluIleAsnAlaGluPh 1520 : CTGATCATCCTCAAAACAATTTCTTGGAAACAGGTGTCGAACTCGGAGATTAACGCGGAGTT : 1580 306 : ePheThrPheCysAlaPheThrValGlyGlnLeuThrHisLeuPhePheLeuThrIleMetG : 326 | !! ! !|||.!!|||! !:!! !||||||..!|||:!!.!!!:!||||||:!!...| eThrLysAspCysThrPheIleMetIleGlnLeuValHisIleLeuTyrLeuThrLeuGlnG 1581 : TACCAAGGATTGCACATTTATCATGATTCAATTGGTACACATACTTTATCTAACTCTTCAAG : 1643 327 : lyGlnPheLeuIleAsnAlaAsnAspGluIlePheLysThrValTyrGlu : 342 ||||||||:!!|||:!!||||||!!:|||||||||:!!:!!:!!!! ||| lyGlnPheValIleAspAlaAsnGluGluIlePheGluSerMet***Glu 1644 : GACAATTCGTGATCGACGCGAACGAGGAAATCTTCGAATCGATGTAAGAA : 1693 vulgar: AfOr111 284 342 . LHQN01023902.1 1519 1693 + 122 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 1520 1693 122 + . gene_id 2 ; sequence AfOr111 ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 1520 1693 . + . LHQN01023902.1 exonerate:protein2genome:local exon 1520 1693 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 1520 1693 122 + . alignment_id 2 ; Query AfOr111 ; Align 1520 285 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 321 Query range: 141 -> 333 Target range: 241 -> 1693 142 : ProMetValProProIleLeuAspIleIleMetProLeuAsnValSerArgLysArgIleLe : 162 |||:!!..!|||! !||||||||||||:!!:!:||| !|||! !|||||| ! ! ! ProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTy 242 : CCGGTGACACCGCATATTTTGGACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTA : 302 163 : uLeuTyrProAlaTyrPheTrpLeuAspAspGluLysTyrTyrValLeuLeuLeuGlyHisM : 183 !:!!||||||||||||!:!!:: !|||!!:.!.|||||| !!|||! !:!!:!! !|||| rIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisM 303 : CATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACA : 365 184 : etIleIleThrIleLeuMetIleCysPheIlePheCysAlaCysAspMetAsnTyrValTyr : 203 || !..!||||||:!!:!:! !!:!:!:!:!! !|||||||||! !:!|||:!!||| etAlaSerValIleLeuValValPheTyrValTyrPheAlaCysAspThrSerTyrIleTyr 366 : TGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACATATAC : 425 204 : AlaValGlnHisAlaCysGlyLeuLeuAlaIleAla{Ly} >>>> Target Intron 1 : 216 !.!|||||||||!.!|||||||||||||||:!::!!{ } 265 bp ValValGlnHisGlyCysGlyLeuLeuAlaValSer{Gl}++ 426 : GTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCC{GG}gt.................... : 468 217 : >>>> {s}TyrArgPheLysAsnValCysLysAspLeuAsnAspLysGluAspHisAlaM : 234 {!}||||||!:!||| !!.! ! !!!:|||::!..!::!:!! :!!::!: ++{y}TyrArgTyrLysCysAlaIleValGluLeuSerSerArgLysArgAsnSerV 469 : .....ag{A}TATCGTTACAAATGTGCGATCGTGGAATTGTCCAGTCGGAAAAGGAACAGTG : 783 235 : etProLeuGluLysIleLysTyrLysSerIleCysGluSerIleLysAlaHisGlnHisAla : 254 !: !!! !!!::!!||| |||!:!!!!:!:|||.!.||||||:!!!.!|||||||||||| alThrGlnAspGluIle---TyrArgArgValCysHisSerIleGlnGlyHisGlnHisAla 784 : TCACGCAGGATGAAATT---TATAGAAGAGTGTGTCATTCGATTCAAGGACACCAGCATGCT : 840 255 : Leu{Ly} >>>> Target Intron 2 >>>> {s}TyrLeuArgLeuIleGluAsnSe : 264 :!!{!!} 614 bp {.} :!!! !:!!! ! !!:!|| Ile{As}++ ++{n}ValIleLeuValLysValSerSe 841 : ATA{AA}gt.........................ag{C}GTGATACTGGTGAAGGTGAGCTC : 1484 265 : rTyrHisThrTyrLeuPheValSerMetGlyLeuLeuIleMetAlaIleSerValSerLeuL : 285 |! .!. ! ! |||!:! ! ! ! ! !||||||!!: !! !!!!:!!|||! ! rSerGluTrpGlnLeuTyrArgValAlaIleThrLeuIleIleLeuLysThrIleSerTrpL 1485 : TTCAGAGTGGCAATTATATCGCGTTGCGATAACGCTGATCATCCTCAAAACAATTTCTTGGA : 1547 286 : euGluValAlaAsnGlyLysAsnGlySerArgLysLeuValGlnAlaThrPheLeuPheAla : 305 !:!!|||:!!|||..!:!!! !..!:!!..! ! !.!...!||||||:!!.!. ! ysGlnValSerAsnSerGluIleAsnAlaGluPheThrLysAspCysThrPheIleMetIle 1548 : AACAGGTGTCGAACTCGGAGATTAACGCGGAGTTTACCAAGGATTGCACATTTATCATGATT : 1607 306 : GlnLeuPheHisThrPheIleLeuThrValGlnGlyGlnPheValIleAsnGluLeuGlnAs : 326 |||||| ! |||! !.!! !||||||:!!||||||||||||||||||:!!! ! !:!!!! GlnLeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAspAlaAsnGluGl 1608 : CAATTGGTACACATACTTTATCTAACTCTTCAAGGACAATTCGTGATCGACGCGAACGAGGA : 1670 327 : pValTyrGluSerIleTyrGlu : 333 ::!!!:!||||||!!:!! ||| uIlePheGluSerMet***Glu 1671 : AATCTTCGAATCGATGTAAGAA : 1693 vulgar: AfOr112_1 141 333 . LHQN01023902.1 241 1693 + 321 M 74 222 S 0 2 5 0 2 I 0 261 3 0 2 S 1 1 M 23 69 G 1 0 M 15 45 S 0 2 5 0 2 I 0 610 3 0 2 S 1 1 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 242 1693 321 + . gene_id 1 ; sequence AfOr112_1 ; gene_orientation + LHQN01023902.1 exonerate:protein2genome:local cds 242 465 . + . LHQN01023902.1 exonerate:protein2genome:local exon 242 465 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local splice5 466 467 . + . intron_id 1 ; splice_site "gt" LHQN01023902.1 exonerate:protein2genome:local intron 466 730 . + . intron_id 1 LHQN01023902.1 exonerate:protein2genome:local splice3 729 730 . + . intron_id 0 ; splice_site "AG" LHQN01023902.1 exonerate:protein2genome:local cds 731 847 . + . LHQN01023902.1 exonerate:protein2genome:local exon 731 847 . + . insertions 0 ; deletions 1 LHQN01023902.1 exonerate:protein2genome:local splice5 848 849 . + . intron_id 2 ; splice_site "Gt" LHQN01023902.1 exonerate:protein2genome:local intron 848 1461 . + . intron_id 2 LHQN01023902.1 exonerate:protein2genome:local splice3 1460 1461 . + . intron_id 1 ; splice_site "AG" LHQN01023902.1 exonerate:protein2genome:local cds 1462 1693 . + . LHQN01023902.1 exonerate:protein2genome:local exon 1462 1693 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 242 1693 321 + . alignment_id 1 ; Query AfOr112_1 ; Align 242 142 222 ; Align 732 217 69 ; Align 801 241 45 ; Align 1463 257 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 282 Query range: 286 -> 398 Target range: 8047 -> 9540 287 : LeuAlaPheThrGlyThrPheValLysLeuSerSerMetGluValAsnValArgPhe >>> : 306 :!!||| ..!||||||||||||||||||.!!!:! :::||| ValAlaAlaValGlyThrPheValLysLeuGlyAsnTyrIleIleAsnGluThrLys++ 8048 : GTGGCAGCGGTTGGGACGTTCGTGAAACTGGGTAATTACattataaacgaaacgaaggt... : 8107 307 : > Target Intron 1 >>>> PheThrPheCysAlaPheThrValGlyGlnLeuThrHi : 318 959 bp !!..! ! ! .!!||| !||||||||| ! !|| ++ValValHisGlyThrPhePheValGlyGlnAlaPheHi 8108 : ......................agGTTGTGCACGGAACGTTTTTCGTCGGCCAAGCGTTTCA : 9100 319 : sLeuPhePheLeuThrIleMetGlyGlnPheLeuIleAsnAlaAsnAspGluIlePheLysT : 339 |:!!|||||||||!.!:!!..!|||||||||:!!||||||||| !||||||:!:!:! ! ! sValPhePheLeuAsnValGlnGlyGlnPheValIleAsnAlaPheAspGluLeuTyrAspL 9101 : CGTTTTCTTTTTGAACGTCCAGGGACAATTTGTGATAAACGCGTTCGACGAACTGTACGACA : 9163 340 : hr{Va} >>>> Target Intron 2 >>>> {l}TyrGluAlaTyrTrpTyrAsnGly : 348 !{:!} 113 bp {!}||||||:!! ! ||||||||| ! ys{Il}++ ++{e}TyrGluSerGlnTrpTyrAsnPhe 9164 : AG{AT}gt.........................ag{A}TACGAATCGCAGTGGTATAATTTC : 9303 349 : SerSerArgThrGlnSerLeuTyrIleLeuValLeuArgLysCysLeuSerProProLysLe : 369 !!! !!|||||||||:!!||||||:!!|||!.!||||||!..||||||!:!|||||| !|| ThrProArgThrGlnAlaLeuTyrValLeuAlaLeuArgSerCysLeuAsnProProLeuLe 9304 : ACTCCTAGAACACAAGCGTTGTATGTATTGGCATTGAGAAGCTGCCTAAACCCACCTCTGTT : 9366 370 : uThrGlyGlyGlyLeuValAlaLeuAsnLeuAspSerPheLeuGln >>>> Target In : 385 ||||!.!||||||:!!..!.!!||||||||| |||||| !:!! 85 b uThrAlaGlyGlyMetThrThrLeuAsnLeuArgSerPheAlaGlu++ 9367 : AACAGCTGGTGGGATGACGACGTTGAATCTACGATCGTTCGCAGAGgt.............. : 9416 386 : tron 3 >>>> IleLeuLysAlaSerPheSerTyrTyrThrValPheArgSer : 398 p |||:!!||||||||| !!|||||||||||||||.!.!:!!!! ++IleIleLysAlaSerValSerTyrTyrThrValMetGlnThr 9417 : ...........agATCATCAAAGCATCTGTTTCCTACTACACGGTGATGCAGACC : 9540 vulgar: AfOr111 286 398 . LHQN01025741.1 8047 9540 + 282 M 19 57 5 0 2 I 0 955 3 0 2 M 34 102 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 44 132 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 8048 9540 282 + . gene_id 1 ; sequence AfOr111 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 8048 8104 . + . LHQN01025741.1 exonerate:protein2genome:local exon 8048 8104 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 8105 8106 . + . intron_id 1 ; splice_site "gt" LHQN01025741.1 exonerate:protein2genome:local intron 8105 9063 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 9062 9063 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 9064 9167 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9064 9167 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 9168 9169 . + . intron_id 2 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 9168 9280 . + . intron_id 2 LHQN01025741.1 exonerate:protein2genome:local splice3 9279 9280 . + . intron_id 1 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 9281 9413 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9281 9413 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 9414 9415 . + . intron_id 3 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 9414 9498 . + . intron_id 3 LHQN01025741.1 exonerate:protein2genome:local splice3 9497 9498 . + . intron_id 2 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 9499 9540 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9499 9540 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 8048 9540 282 + . alignment_id 1 ; Query AfOr111 ; Align 8048 287 57 ; Align 9064 306 102 ; Align 9282 341 132 ; Align 9499 385 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 263 Query range: 131 -> 265 Target range: 1552 -> 2026 132 : SerThrValTyrGluValSerIlePhePheCysGlyPheMetPheLeuLeuIleProSerIl : 152 ||| ! !!:! !|||!:! !.!.|||||| ! !!!!:||| !! !:!: !!! !! SerLeuTyrPheThrValAsnGlyLeuPheCysTyrValIlePheThrSerValAlaIleTh 1553 : TCTCTGTATTTCACAGTAAACGGACTGTTTTGCTACGTTATATTCACCTCAGTGGCGATTAC : 1613 153 : eProProIleLeuAsnIleIleSerProLeuAsnValSerArgGlyArgGluLeuIleTyrP : 173 |||! !:!!|||:!!:!!||||||||| !|||! !||||||||| !!!:!!!||||||| rProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValAspPheIleTyrP 1614 : GCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTCATTTATC : 1676 174 : roSerTyrTyrPheValAspGluGluLysTyrTyrTyrProIleLeuMetHisMetIleAla : 193 ||:!!|||||| !:!!|||||||||:!!:!!|||||| !:!::!! ||||||:!!..! roAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHisMetLeuCys 1677 : CTGCATACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCACATGCTCTGC : 1736 194 : ValAlaLeuIleLeuThrSerValTyrValAlaCysAspThrTyrLeuValTyrIleValHi : 214 ||| ! !:!!:!! !! !||||||:!!:!!||||||||| !! !:!! !!||||||!! ValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMetAsnIleValGl 1737 : GTGATAACTGTAGTGTTTTTCGTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCA : 1799 215 : sHisGlyCysAlaLeuLeuAlaIleSer{Gl} >>>> Target Intron 1 >>>> { : 224 .|||!.!|||!.!|||||| !:!!|||{||} 75 bp { nHisAlaCysGlyLeuLeuAsnValSer{Gl}++ ++{ 1800 : ACACGCGTGCGGATTACTGAACGTCTCT{GG}gt.........................ag{ : 1906 225 : y}TyrArgPheLysHisAlaValAspAspIleLysLeuCysGlyGluAspTyrIleAspSer : 244 |}:!! !!|||||| ||||||!!: !:!: :!! ! !.!.!!: ! !!: !!!!! y}HisCysPheLysTrpAlaValGluThrVal---IleThrLysAsnGluLysMetHisThr 1907 : G}CATTGCTTCAAGTGGGCAGTGGAAACTGTG---ATTACCAAGAACGAGAAGATGCACACC : 1961 245 : LeuMetAspGluThrTyrThrLysValArgGlnSerIleLysAlaHisLysThrAlaValGl : 265 !:!!|||!!:||||||! !|||||||||!!.|||||||||||||||:!! !|||:!!|| GluValAspAspThrTyrArgLysValArgHisSerIleLysAlaHisGlnHisAlaMetGl 1962 : GAAGTGGACGACACGTATAGAAAAGTGCGCCATTCGATCAAGGCTCATCAACACGCTATGGA : 2024 266 : u : 265 | u 2025 : G : 2026 vulgar: AfOr111 131 265 . LHQN01025741.1 1552 2026 + 263 M 92 276 S 0 2 5 0 2 I 0 71 3 0 2 S 1 1 M 10 30 G 1 0 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1553 2026 263 + . gene_id 2 ; sequence AfOr111 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 1553 1830 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1553 1830 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 1831 1832 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 1831 1905 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 1904 1905 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 1906 2026 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1906 2026 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 1553 2026 263 + . alignment_id 2 ; Query AfOr111 ; Align 1553 132 276 ; Align 1907 225 30 ; Align 1937 236 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 250 Query range: 132 -> 224 Target range: 4966 -> 5242 133 : ThrValTyrGluValSerIlePhePheCysGlyPheMetPheLeuLeuIleProSerIlePr : 153 ||| !! ! !||| !|||! !!.|||!.! !:!:|||:!!! !:!:|||! !:!: ! ThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSe 4967 : ACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTC : 5027 154 : oProIleLeuAsnIleIleSerProLeuAsnValSerArgGlyArgGluLeuIleTyrProS : 174 !|||||||||:!!|||:!!! !|||||||||! !!!!|||!.!||| !!!!:!!||||||: rProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProA 5028 : GCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAG : 5090 175 : erTyrTyrPheValAspGluGluLysTyrTyrTyrProIleLeuMetHisMetIleAlaVal : 194 !!||||||||||||||||||!!:||||||:!!||| !|||:!! !|||||| ! !||| laTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuVal 5091 : CTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTA : 5150 195 : AlaLeuIleLeuThrSerValTyrValAlaCysAspThrTyrLeuValTyrIleValHisHi : 215 !.!:!!!!:|||! !||||||!:! !|||||||||.!! !!! !|||||| !|||!!.|| ValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHi 5151 : GTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACA : 5213 216 : sGlyCysAlaLeuLeuAlaIleSerGly : 224 |!.!|||!.!||||||||||||:!!||| sAlaCysGlyLeuLeuAlaIleAlaGly 5214 : CGCTTGCGGATTGTTGGCCATTGCAGGG : 5242 vulgar: AfOr111 132 224 . LHQN01025741.1 4966 5242 + 250 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4967 5242 250 + . gene_id 3 ; sequence AfOr111 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4967 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4967 5242 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4967 5242 250 + . alignment_id 3 ; Query AfOr111 ; Align 4967 133 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 202 Query range: 125 -> 224 Target range: 11438 -> 11735 126 : LysArgAlaLysValLeuSerThrValTyrGluValSerIlePhePheCysGlyPheMet : 145 |||::: ! !..!|||..! !..!!:! !|||!:! !:!.!!|||..!|||:!! LysGlnLeuAlaThrLeuAspTrpThrPheProValAsnAlaTyrIleCysSerPheLeu 11439 : aaacaattAGCAACTCTCGATTGGACATTTCCAGTGAACGCGTACATTTGCTCGTTCTTG : 11496 146 : PheLeuLeuIleProSerIleProProIleLeuAsnIleIleSerProLeuAsnValSer : 165 |||:!!! !:!:|||!!!! !!! !:!::!!||| !!.! !!! !|||:!!!!! PheIleGlnValProTrpThrThrArgLeuValAsnSerTyrLysThrGlnAsnIleThr 11497 : TTCATACAAGTGCCATGGACGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACG : 11556 166 : ArgGlyArgGluLeuIleTyrProSerTyrTyrPheValAspGluGluLysTyrTyrTyr : 185 ! !.!! !:!!!!!:!! |||.!!||||||||||||||||||! !:!!||||||||| ProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyrTyr 11557 : CCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTAT : 11616 186 : ProIleLeuMetHisMetIleAlaValAlaLeuIleLeuThrSerValTyrValAlaCys : 205 !|||:!!:!:||| ! ..!..!!.!||||||:!!..! !|||||| !|||||| TyrIleIleLeuHisGlyThrCysThrValLeuIleValValValValTyrCysAlaCys 11617 : TACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 11676 206 : AspThrTyrLeuValTyrIleValHisHisGlyCysAlaLeuLeuAlaIleSerGly : 224 |||||| !! !:!! :!:|||!!.||| !|||!.!|||!!!|||:!::!!||| AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly 11677 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 11735 vulgar: AfOr111 125 224 . LHQN01025741.1 11438 11735 + 202 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11439 11735 202 + . gene_id 4 ; sequence AfOr111 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11439 11735 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11439 11735 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11439 11735 202 + . alignment_id 4 ; Query AfOr111 ; Align 11439 126 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 333 -> 385 Target range: 2536 -> 2692 334 : AspGluIlePheLysThrValTyrGluAlaTyrTrpTyrAsnGlySerSerArgThrGlnSe : 354 .!.|||:!:||| ! !|||...||| ! |||||||||.!!||| !!|||||||||!! GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGlnTh 2537 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAAAC : 2597 355 : rLeuTyrIleLeuValLeuArgLysCysLeuSerProProLysLeuThrGlyGlyGlyLeuV : 375 !||||||:!:|||!.!||||||!:! !!|||!!!|||||| !||||||!.!|||||||||: rLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGlyLeuI 2598 : TCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGA : 2660 376 : alAlaLeuAsnLeuAspSerPheLeuGlnIle : 385 !!:!!|||||||||!!:!!!||| !:!!:!! leSerLeuAsnLeuGluThrPheAlaGluVal 2661 : TTTCCTTGAATTTGGAGACTTTTGCCGAGGTA : 2692 vulgar: AfOr111 333 385 . LHQN01025741.1 2536 2692 + 160 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 2537 2692 160 + . gene_id 5 ; sequence AfOr111 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 2537 2692 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2537 2692 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 2537 2692 160 + . alignment_id 5 ; Query AfOr111 ; Align 2537 334 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 340 -> 385 Target range: 6187 -> 6322 341 : TyrGluAlaTyrTrpTyrAsnGlySerSerArgThrGlnSerLeuTyrIleLeuValLeuAr : 361 ||||||:!! |||||||||..!|||!!!!:!||||||:!!||||||||||||!.!||||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeuAr 6188 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTACG : 6248 362 : gLysCysLeuSerProProLysLeuThrGlyGlyGlyLeuValAlaLeuAsnLeuAspSerP : 382 |!.. !!|||!:!|||||| !||||||!.!||||||!!!:!!.!!||||||||| ! !!!| gSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLysThrP 6249 : GAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAGACCT : 6311 383 : heLeuGlnIle : 385 ||! !:!!:!! heSerGluVal 6312 : TCTCAGAGGTA : 6322 vulgar: AfOr111 340 385 . LHQN01025741.1 6187 6322 + 142 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 6188 6322 142 + . gene_id 6 ; sequence AfOr111 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 6188 6322 . + . LHQN01025741.1 exonerate:protein2genome:local exon 6188 6322 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 6188 6322 142 + . alignment_id 6 ; Query AfOr111 ; Align 6188 341 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 340 -> 385 Target range: 12802 -> 12937 341 : TyrGluAlaTyrTrpTyrAsnGlySerSerArgThrGlnSerLeuTyrIleLeuValLeu : 360 ||||||:!!! ||||||!...!!||||||!:!||||||:!!||||||:!::!!!.!||| TyrGluSerLeuTrpTyrThrSerSerSerLysThrGlnAlaLeuTyrValValAlaLeu 12803 : TACGAATCATTATGGTACACAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCGTTA : 12860 361 : ArgLysCysLeuSerProProLysLeuThrGlyGlyGlyLeuValAlaLeuAsnLeuAsp : 380 |||!:! !|||!!!||| !! ||||||!.!|||||||||||| !||||||:!!! ArgArgAsnLeuThrProThrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMetAla 12861 : CGAAGAAACCTAACACCTACCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATGGCA : 12920 381 : SerPheLeuGlnIle : 385 |||||||||:!!:!! SerPheLeuGluVal 12921 : AGTTTCTTGGAGGTA : 12937 vulgar: AfOr111 340 385 . LHQN01025741.1 12802 12937 + 139 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 12803 12937 139 + . gene_id 7 ; sequence AfOr111 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 12803 12937 . + . LHQN01025741.1 exonerate:protein2genome:local exon 12803 12937 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 12803 12937 139 + . alignment_id 7 ; Query AfOr111 ; Align 12803 341 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 133 -> 191 Target range: 8880 -> 9054 134 : ValTyrGluValSerIlePhePheCysGlyPheMetPheLeuLeuIleProSerIleProPr : 154 ..!!:! !!.! !:!:|||.!! !!.! !!!:||||||! !:!:|||! ! !||| ThrPheThrAlaHisLeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIl 8881 : ACGTTTACAGCACATTTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGAT : 8941 155 : oIleLeuAsnIleIleSerProLeuAsnValSerArgGlyArgGluLeuIleTyrProSerT : 175 !||||||:!!||| !:!!||||||||| !!!!||| !|||! !!!!:!!||||||:!!| eIleLeuAspIleCysAlaProLeuAsnLysThrArgLysArgAlaPheValTyrProAlaT 8942 : CATCTTGGACATTTGCGCGCCACTGAACAAAACGAGAAAACGTGCGTTCGTTTATCCAGCCT : 9004 176 : yrTyrPheValAspGluGluLysTyrTyrTyrProIleLeuMetHisMet : 191 |||||!:::!!||| |||:!!|||||| !!!::!!!!:|||!!: yrTyrTrpMetAspProGluGlnTyrTyrMetIleMetIleIleHisIle 9005 : ATTACTGGATGGATCCTGAGCAATACTACATGATAATGATAATACACATA : 9054 vulgar: AfOr111 133 191 . LHQN01025741.1 8880 9054 + 129 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 8881 9054 129 + . gene_id 8 ; sequence AfOr111 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 8881 9054 . + . LHQN01025741.1 exonerate:protein2genome:local exon 8881 9054 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 8881 9054 129 + . alignment_id 8 ; Query AfOr111 ; Align 8881 134 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 5 -> 62 Target range: 4347 -> 4518 6 : LeuLeuAsnMetAspLysArgIleIleGluAspGlnTyrLeuLysIleAsnLysPhePheGl : 26 :!!|||!..|||||| !! !! :!!||| ! !::||||||!:!||||||||| .!!|| IleLeuThrMetAspAlaIleThrLeuGluLysArgTyrLeuArgIleAsnLysLysLeuGl 4348 : ATTTTGACAATGGATGCGATCACGTTAGAGAAACGTTACTTGAGAATCAACAAGAAGCTCGG : 4408 27 : yGlnLeuValGlyValTrpProTyrGlnGlnArgPheThrLysPheCysIleArgPheIleT : 47 |..!|||..!||||||||||||||||||:!!!!!! !!|||!:: !! !||| :!!. yMetLeuThrGlyValTrpProTyrGlnLysSerSerProLysTrpIleSerArgThrValV 4409 : CATGCTAACCGGTGTGTGGCCCTATCAAAAGAGCTCGCCAAAATGGATCAGTCGAACGGTAG : 4471 48 : hrSerValIleValValLeuThrLeuAlaAlaGlnIleSerArgVal : 62 .! ! !!:!::!!:!!! ! !! !!.!.!!|||:!!..!!:!:!! alLeuPheValIleIleProCysTyrValThrGlnValGluLysIle 4472 : TGCTCTTTGTGATAATACCTTGTTATGTTACACAGGTAGAAAAAATA : 4518 vulgar: AfOr111 5 62 . LHQN01025741.1 4347 4518 + 114 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4348 4518 114 + . gene_id 9 ; sequence AfOr111 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4348 4518 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4348 4518 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4348 4518 114 + . alignment_id 9 ; Query AfOr111 ; Align 4348 6 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 268 Query range: 49 -> 215 Target range: 1074 -> 1831 50 : SerAsnIleIleLeuPhePheSerLeuSerValAlaMetAspGlnValProPheLeuValVa : 70 :!!:!!|||:!!:!! !.!.!:! !..!|||!.!!!:!!:||| !|||||||||:!!|| AlaHisIleLeuValAsnLeuAsnThrAspValValIleGluGlnCysProPheLeuMetVa 1075 : GCACACATCTTAGTGAATCTGAACACGGATGTTGTAATAGAGCAATGCCCATTTTTGATGGT : 1135 71 : lAlaThrLeuLeuMetIleLysTyrAsnPhePheIleIleAsnGluGlnLys >>>> Tar : 88 ||||! ! ! !!!::!!||| ! !!:!||||||:!!|||:!!:!! lAlaIleGlyThrIleLeuLysGluValAsnTyrIleIleHisGluLysGlu++ 1136 : CGCGATAGGAACAATTTTAAAGGAGGTGAATTACATCATACACGAGAAAGAGgt........ : 1191 89 : get Intron 1 >>>> PheLysGluLeuPheThrSerIleLeuAsnAspTrpGlnLysL : 102 74 bp .!.||||||:!!.!. !!!!:!!!!!||||||||| !! !! ++LeuLysGluMetIleGluCysLeuPheAsnAspTrpValThrT 1192 : .................agCTAAAGGAGATGATAGAGTGCTTATTCAACGATTGGGTAACGA : 1305 103 : ysLysThrHisGluGluGluMetIleMetGluLysTyrAlaAspLysSerValPhePheIle : 122 !::! !! ! ...||| ! ||||||!!:||||||||| ! !:!.!! !||||||! ! hrArgProLysSerGluMetAspIleMetAspLysTyrAlaLysArgGlyArgPhePheSer 1306 : CACGGCCGAAAAGTGAAATGGACATTATGGACAAGTACGCTAAAAGAGGCCGGTTTTTCAGT : 1365 123 : LeuIleTyrVal{V} >>>> Target Intron 2 >>>> {al}AsnAlaTyrPheCy : 132 ! !:!:||||||{|} 188 bp {||}|||!.! ||||| ArgLeuTyrVal{V}++ ++{al}AsnGlyLeuPheCy 1366 : CGTTTGTACGTC{G}gt.........................ag{TA}AACGGACTGTTTTG : 1583 133 : sSerIleLeuPheLeuLeuLeuProPheThrProIleLeuLeuAspIlePheIleProLeuA : 153 |! !:!!:!!||| !! !:!! !!.!!|||||| !:!!||||||:!!.!! !||| !| sTyrValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysA 1584 : CTACGTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAA : 1646 154 : snGluSerArgProArgValGlnMetTyrProAlaTyrTyrTyrIleGluAsnGluAlaAsp : 173 ||||||||||| ! !! ! !!:||||||||||||||| !:!!!!:.!.||| !!: snGluSerArgGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAspGluGlu---Glu 1647 : ACGAATCGCGTGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAG---GAA : 1703 174 : TyrTyrTyrProIleLeuIlePheSerIleValSerLeuLeuThrAlaMetCysValPheIl : 194 :!!|||||| !:!::!! ! !! !:!! ! !:!! !..!!.!.!.! !|||!:!|| HisTyrTyrIleLeuMetGlyHisMetLeuCysValIleThrValValPhePheValTyrIl 1704 : CATTATTACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTCTACAT : 1766 195 : eAlaThrAspThrMetLeuIleTyrIleValGlnHisAlaCysGlyLeuLeuAlaLeuAlaG : 215 |:!! !||||||!!:! !!!: !!||||||||||||||||||||||||||| !:!!:!!| eSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnValSerG 1767 : CTCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGCGGATTACTGAACGTCTCTG : 1829 216 : ly : 215 || ly 1830 : GG : 1831 vulgar: AfOr106 49 215 . LHQN01025741.1 1074 1831 + 268 M 38 114 5 0 2 I 0 70 3 0 2 M 39 117 S 0 1 5 0 2 I 0 184 3 0 2 S 1 2 M 44 132 G 1 0 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1075 1831 268 + . gene_id 1 ; sequence AfOr106 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 1075 1188 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1075 1188 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 1189 1190 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 1189 1262 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 1261 1262 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 1263 1380 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1263 1380 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 1381 1382 . + . intron_id 2 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 1381 1568 . + . intron_id 2 LHQN01025741.1 exonerate:protein2genome:local splice3 1567 1568 . + . intron_id 1 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 1569 1831 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1569 1831 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 1075 1831 268 + . alignment_id 1 ; Query AfOr106 ; Align 1075 50 114 ; Align 1263 88 117 ; Align 1571 128 132 ; Align 1703 173 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 262 Query range: 292 -> 387 Target range: 5762 -> 6438 293 : GluThrAsnGlnTyrTyrGlyTyrValIleAlaGlnValValHisIlePhePheLeuThrAl : 313 ||| !!.. !|||! ! !!:! !!! ||||||:!!:!!|||!!:.!.||||||..!!. GluTrpThrLeuTyrCysThrPhePheThrAlaGlnLeuLeuHisMetLeuPheLeuValVa 5763 : GAATGGACATTGTACTGCACGTTCTTCACGGCCCAGTTGTTACACATGCTGTTCTTAGTCGT : 5823 314 : aGlnGlyGlnPheValIleAspSerHisGluAsnValTyrTrpAsp{Me} >>>> Targe : 329 !|||||||||||||||:!:|||:!!:!!!!::!!|||||| {!!} lGlnGlyGlnPheValLeuAspAlaTyrAspAspValTyrAsnThr{Il}++ 5824 : TCAGGGGCAGTTCGTGTTGGACGCGTACGACGATGTTTATAATACG{AT}gt.......... : 5875 330 : t Intron 1 >>>> {t}TyrGluProTyrTrpTyrAsnLeuGlnSerLysMetGlnAla : 343 314 bp {:}|||||| !! |||||||||! !..!!!!|||! !|||||| ++{e}TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAla 5876 : ...............ag{A}TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCG : 6227 344 : MetPheValLeuIleLeuArgArgAsnLeuAsnProProLeuLeuThrAlaGlyGlyLeuVa : 364 :!:!:!:!!||| ||||||!!!!:!||||||||||||||||||||||||||||||!!!:! LeuTyrIleLeuAlaLeuArgSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIl 6228 : TTATACATATTAGCGTTACGGAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTAT : 6290 365 : lGlnLeuAsnLeuAsnThrPheAlaLys >>>> Target Intron 2 >>>> ValVa : 375 ! !|||||||||!!.||||||:!!:!! 77 bp :!!:! eThrLeuAsnLeuLysThrPheSerGlu++ ++IleIl 6291 : AACGTTGAATTTAAAGACCTTCTCAGAGgt.........................agATTAT : 6400 376 : lLysThrSerValSerTyrPheThrValLeuLysSer : 387 !|||:!!||||||||||||!:!||||||:!!:!!||| eLysSerSerValSerTyrTyrThrValMetGlnSer 6401 : AAAATCATCCGTGTCTTACTATACGGTGATGCAATCG : 6438 vulgar: AfOr106 292 387 . LHQN01025741.1 5762 6438 + 262 M 36 108 S 0 2 5 0 2 I 0 310 3 0 2 S 1 1 M 44 132 5 0 2 I 0 73 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5763 6438 262 + . gene_id 2 ; sequence AfOr106 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 5763 5872 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5763 5872 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 5873 5874 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 5873 6186 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 6185 6186 . + . intron_id 0 ; splice_site "aG" LHQN01025741.1 exonerate:protein2genome:local cds 6187 6319 . + . LHQN01025741.1 exonerate:protein2genome:local exon 6187 6319 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 6320 6321 . + . intron_id 2 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 6320 6396 . + . intron_id 2 LHQN01025741.1 exonerate:protein2genome:local splice3 6395 6396 . + . intron_id 1 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 6397 6438 . + . LHQN01025741.1 exonerate:protein2genome:local exon 6397 6438 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5763 6438 262 + . alignment_id 2 ; Query AfOr106 ; Align 5763 293 108 ; Align 6188 330 132 ; Align 6397 374 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 219 Query range: 298 -> 387 Target range: 12239 -> 13059 299 : GlyTyrValIleAlaGlnValValHisIlePhePheLeuThrAlaGlnGlyGlnPheVal : 318 .!!!:!:!!:!:..!|||:!!:!!|||:!!||| !!:!!! ! !||||||||||||||| SerPheMetLeuCysGlnLeuMetHisLeuPheValIleMetLeuGlnGlyGlnPheVal 12240 : AGTTTCATGTTGTGTCAACTGATGCATCTATTTGTCATCATGCTTCAGGGACAGTTCGTG : 12297 319 : IleAspSerHisGluAsnValTyrTrpAsp{Me} >>>> Target Intron 1 >>> : 329 :!:|||||| !!!:!..:!!:!! !! {!!} 470 bp LeuAspSerCysAspArgIleHisAlaAla{Il}++ 12298 : CTGGATTCGTGCGACAGAATTCACGCGGCG{AT}gt........................ : 12334 330 : > {t}TyrGluProTyrTrpTyrAsnLeuGlnSerLysMetGlnAlaMetPheValLeu : 347 {:}|||||| !!! ||||||!.. !...||||||! ||||||:!:!:!|||:!! ++{e}TyrGluSerLeuTrpTyrThrSerSerSerLysThrGlnAlaLeuTyrValVal 12335 : .ag{A}TACGAATCATTATGGTACACAAGTTCTTCGAAAACACAAGCATTATACGTGGTA : 12854 348 : IleLeuArgArgAsnLeuAsnProProLeuLeuThrAlaGlyGlyLeuValGlnLeuAsn : 367 |||||||||||||||!..||| !!! !|||||||||||||||||||||||||||||| AlaLeuArgArgAsnLeuThrProThrCysLeuThrAlaGlyGlyLeuValGlnLeuAsn 12855 : GCGTTACGAAGAAACCTAACACCTACCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAAC : 12914 368 : LeuAsnThrPheAlaLys >>>> Target Intron 2 >>>> ValValLysThrS : 378 :!! !:!||| !:!! 83 bp |||||||||! !| MetAlaSerPheLeuGlu++ ++ValValLysMetS 12915 : ATGGCAAGTTTCTTGGAGgt.........................agGTGGTAAAAATGT : 13030 379 : erValSerTyrPheThrValLeuLysSer : 387 |||||||||||!:!||||||||||||!!! erValSerTyrTyrThrValLeuLysThr 13031 : CCGTATCCTATTATACGGTGTTGAAGACA : 13059 vulgar: AfOr106 298 387 . LHQN01025741.1 12239 13059 + 219 M 30 90 S 0 2 5 0 2 I 0 466 3 0 2 S 1 1 M 44 132 5 0 2 I 0 79 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 12240 13059 219 + . gene_id 3 ; sequence AfOr106 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 12240 12331 . + . LHQN01025741.1 exonerate:protein2genome:local exon 12240 12331 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 12332 12333 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 12332 12801 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 12800 12801 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 12802 12934 . + . LHQN01025741.1 exonerate:protein2genome:local exon 12802 12934 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 12935 12936 . + . intron_id 2 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 12935 13017 . + . intron_id 2 LHQN01025741.1 exonerate:protein2genome:local splice3 13016 13017 . + . intron_id 1 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 13018 13059 . + . LHQN01025741.1 exonerate:protein2genome:local exon 13018 13059 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 12240 13059 219 + . alignment_id 3 ; Query AfOr106 ; Align 12240 299 90 ; Align 12803 330 132 ; Align 13018 374 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 207 Query range: 119 -> 215 Target range: 4957 -> 5242 120 : PhePheIleLeuIleTyrValValAsnAlaTyrPheCysSerIleLeuPheLeuLeuLeuPr : 140 |||!:!.!! !.!! ! ..!|||:!! !! !!.|||:!! !||||||:!!! !||||| PheTyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuPr 4958 : TTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCC : 5018 141 : oPheThrProIleLeuLeuAspIlePheIleProLeuAsnGluSerArgProArgValGlnM : 161 ||||..! !! :!!|||||||||.!!!!:||||||||||||!!!||| !!|||:!! : oPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheV 5019 : GTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCG : 5081 162 : etTyrProAlaTyrTyrTyrIleGluAsnGluAlaAspTyrTyrTyrProIleLeuIlePhe : 181 !:|||||||||||||||!:!:!!!!: |||! ! ! |||:!!||| !|||:!! ! alTyrProAlaTyrTyrPheValAsp---GluAspLysTyrHisTyrLeuIleValGlyHis 5082 : TCTATCCAGCTTACTATTTCGTCGAC---GAGGACAAATATCATTACTTGATCGTAGGGCAT : 5138 182 : SerIleValSerLeuLeuThrAlaMetCysValPheIleAlaThrAspThrMetLeuIleTy : 202 ! ! !:!! !:!!:!!! ! !!!:! !|||||| !||| !|||.!!! ! !:!:|| MetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTy 5139 : ATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTA : 5201 203 : rIleValGlnHisAlaCysGlyLeuLeuAlaLeuAlaGly : 215 | !|||||||||||||||||||||||||||:!!|||||| rAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5202 : CGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5242 vulgar: AfOr106 119 215 . LHQN01025741.1 4957 5242 + 207 M 50 150 G 1 0 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4958 5242 207 + . gene_id 4 ; sequence AfOr106 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4958 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4958 5242 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 4958 5242 207 + . alignment_id 4 ; Query AfOr106 ; Align 4958 120 150 ; Align 5108 171 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 299 -> 375 Target range: 9078 -> 9419 300 : TyrValIleAlaGlnValValHisIlePhePheLeuThrAlaGlnGlyGlnPheValIleAs : 320 !:! !!:!!!.!|||!.! !!|||:!!|||||||||!.!!.!||||||||||||||||||:! PhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGlnGlyGlnPheValIleAs 9079 : TTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGGACAATTTGTGATAAA : 9139 321 : pSerHisGluAsn{Va} >>>> Target Intron 1 >>>> {l}TyrTrpAspMetT : 330 !:!! !!!:.!.{:!} 113 bp {!} ! !! | nAlaPheAspGlu{Le}++ --{u}ValLeuCysArgT 9140 : CGCGTTCGACGAA{CT}gt.........................ct{T}GTCCTTTGCAGAT : 9282 331 : yrGluProTyrTrpTyrAsnLeuGlnSerLysMetGlnAlaMetPheValLeuIleLeuArg : 350 ||||| !! ! |||||||||!!! !!!:!! ||||||:!!!:!|||||| !|||||| yrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeuArg 9283 : ACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTGAGA : 9342 351 : ArgAsnLeuAsnProProLeuLeuThrAlaGlyGlyLeuValGlnLeuAsnLeuAsnThrPh : 371 !!! !||||||||||||||||||||||||||||||:!!..! !|||||||||...:!!|| SerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSerPh 9343 : AGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATCGTT : 9405 372 : eAlaLysValVal : 375 ||||:!!|||:!! eAlaGluValIle 9406 : CGCAGAGGTGATT : 9419 vulgar: AfOr106 299 375 . LHQN01025741.1 9078 9419 + 174 M 25 75 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 9079 9419 174 + . gene_id 5 ; sequence AfOr106 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 9079 9155 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9079 9155 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 9156 9157 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 9156 9268 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 9267 9268 . + . intron_id 0 ; splice_site "CT" LHQN01025741.1 exonerate:protein2genome:local cds 9269 9419 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9269 9419 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 9079 9419 174 + . alignment_id 5 ; Query AfOr106 ; Align 9079 300 75 ; Align 9270 326 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 322 -> 387 Target range: 2536 -> 2970 323 : GluAsnValTyrTrpAspMetTyrGluProTyrTrpTyrAsnLeuGlnSerLysMetGlnAl : 343 :!!.!.:!!!:! !! |||... !! ! ||||||||| !..! !!!:!! !|||.! GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGlnTh 2537 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAAAC : 2597 344 : aMetPheValLeuIleLeuArgArgAsnLeuAsnProProLeuLeuThrAlaGlyGlyLeuV : 364 !:!!!:!|||||| !|||||||||!:!|||!.!|||||||||||||||||||||||||||: rLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGlyLeuI 2598 : TCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGA : 2660 365 : alGlnLeuAsnLeuAsnThrPheAlaLys >>>> Target Intron 1 >>>> ValV : 375 !!...|||||||||.!.|||||||||:!! 239 bp :!!: leSerLeuAsnLeuGluThrPheAlaGlu++ ++IleL 2661 : TTTCCTTGAATTTGGAGACTTTTGCCGAGgt.........................agaTCT : 2932 376 : alLysThrSerValSerTyrPheThrValLeuLysSer : 387 !!|||.!!|||||||||:::|||||||||:!!|||||| euLysAlaSerValSerPhePheThrValMetLysSer 2933 : TAAAAGCAtccgtttcctttttcacgGTAATGAAATCG : 2970 vulgar: AfOr106 322 387 . LHQN01025741.1 2536 2970 + 170 M 51 153 5 0 2 I 0 235 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 2537 2970 170 + . gene_id 6 ; sequence AfOr106 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 2537 2689 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2537 2689 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 2690 2691 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 2690 2928 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 2927 2928 . + . intron_id 0 ; splice_site "ag" LHQN01025741.1 exonerate:protein2genome:local cds 2929 2970 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2929 2970 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 2537 2970 170 + . alignment_id 6 ; Query AfOr106 ; Align 2537 323 153 ; Align 2929 374 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 124 -> 215 Target range: 11465 -> 11735 125 : TyrValValAsnAlaTyrPheCysSerIleLeuPheLeuLeuLeuProPheThrProIle : 144 !:! !||||||||||||.!!||||||.!!||||||:!!! !:!!|||!::||| !! ! PheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArg 11466 : TTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGA : 11523 145 : LeuLeuAspIlePheIleProLeuAsnGluSerArgProArgValGlnMetTyrProAla : 164 |||:!!:!! !:!! !!! !||| !!!!! ! ! ! ! :!: |||!.! LeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuGlnPheValIleProGly 11524 : TTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGA : 11583 165 : TyrTyrTyrIleGluAsnGluAlaAspTyrTyrTyrProIleLeuIlePheSerIleVal : 184 ||||||!:!:!!!!: |||!.!!!:||||||||| !|||:!!:!! !.!!! ! TyrTyrPheValAsp---GluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCys 11584 : TATTACTTCGTCGAC---GAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGC : 11640 185 : SerLeuLeuThrAlaMetCysValPheIleAlaThrAspThrMetLeuIleTyrIleVal : 204 !!!:!!|||! !!.!:!! |||!:! !||| !||||||! ! !!!: :!:||| ThrValLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuVal 11641 : ACAGTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTG : 11700 205 : GlnHisAlaCysGlyLeuLeuAlaLeuAlaGly : 215 ||||||.!!|||||||||!!!|||:!!|||||| GlnHisThrCysGlyLeuPheAlaValAlaGly 11701 : CAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 11735 vulgar: AfOr106 124 215 . LHQN01025741.1 11465 11735 + 167 M 45 135 G 1 0 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11466 11735 167 + . gene_id 7 ; sequence AfOr106 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11466 11735 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11466 11735 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 11466 11735 167 + . alignment_id 7 ; Query AfOr106 ; Align 11466 125 135 ; Align 11601 171 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 47 -> 179 Target range: 7984 -> 9048 48 : GlnGlySerAsnIleIleLeuPhePheSerLeuSerValAlaMetAspGlnValProPheLe : 68 ||| !:!!|||! !:!:||||||||||||:!!..! ! !:!!||| :!!|||||| GlnIleAlaAsnThrValLeuPhePheSerMetAspAsnLeuValAspGlyIleProPheAs 7985 : CAGATAGCAAACACCGTGCTATTCTTCAGCATGGACAATCTCGTGGATGGCATACCTTTCAA : 8045 69 : uValValAlaThrLeuLeuMetIleLysTyrAsnPhePheIleIleAsnGluGlnLys >> : 88 !|||!.!|||..! ! !.!.:!:||| ..! !!:!|||||||||||| ||| nValAlaAlaValGlyThrPheValLysLeuGlyAsnTyrIleIleAsnGluThrLys++ 8046 : CGTGGCAGCGGTTGGGACGTTCGTGAAACTGGGTAATTACattataaacgaaacgaaggt.. : 8107 89 : >> Target Intron 1 >>>> PheLysGluLeuPheThrSerIleLeuAsnAspTrpG : 100 668 bp ! !||| :!! ! |||! ! !! !!!.! ! +-CysLysIleMetValThrTyrAlaArgLysGlyGlnL 8108 : .......................aaTGCAAAATCATGGTAACCTATGCTCGAAAAGGACAAC : 8809 101 : lnLysLysLysThrHisGluGluGluMetIleMetGluLysTyrAlaAspLysSerValPhe : 120 !! ! ! !:!!! !! |||||| ! |||! ! !! !!.! !:!!.!! euIleAlaLeuCysTyrAlaGlyGluMetGluAsnGluIleThrProArgAsnTyrLeuIle 8810 : TGATCGCGTTGTGTTACGCAGGTGAGATGGAGAATGAAATTACCCCGAGAAATTACCTTATT : 8869 121 : PheIleLeuIleTyrValValAsnAlaTyrPheCysSerIleLeuPheLeuLeuLeuProPh : 141 ! ! !|||! !:!..!!.!:!! !!:!.!! !:!! !:!!||||||! !:!!||||| SerProLeuThrPheThrAlaHisLeuPheLeuProAlaAlaIlePheLeuCysValProPh 8870 : TCTCCTTTGACGTTTACAGCACATTTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTT : 8932 142 : eThrProIleLeuLeuAspIlePheIleProLeuAsnGluSerArgProArgValGlnMetT : 162 |.!!||||||:!!|||||||||! ! |||||||||:!!!!!||| !|||!.! :!:| eAlaProIleIleLeuAspIleCysAlaProLeuAsnLysThrArgLysArgAlaPheValT 8933 : CGCACCGATCATCTTGGACATTTGCGCGCCACTGAACAAAACGAGAAAACGTGCGTTCGTTT : 8995 163 : yrProAlaTyrTyrTyrIleGluAsnGluAlaAspTyrTyrTyrProIleLeu : 179 ||||||||||||||!::!!:!!: !||| ! !!||| !|||:!! yrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMetIleMetIleIle 8996 : ATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATGATAATGATAATA : 9048 vulgar: AfOr106 47 179 . LHQN01025741.1 7984 9048 + 155 M 40 120 5 0 2 I 0 664 3 0 2 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 7985 9048 155 + . gene_id 8 ; sequence AfOr106 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 7985 8104 . + . LHQN01025741.1 exonerate:protein2genome:local exon 7985 8104 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 8105 8106 . + . intron_id 1 ; splice_site "gt" LHQN01025741.1 exonerate:protein2genome:local intron 8105 8772 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 8771 8772 . + . intron_id 0 ; splice_site "AA" LHQN01025741.1 exonerate:protein2genome:local cds 8773 9048 . + . LHQN01025741.1 exonerate:protein2genome:local exon 8773 9048 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 7985 9048 155 + . alignment_id 8 ; Query AfOr106 ; Align 7985 48 120 ; Align 8773 88 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 321 Query range: 254 -> 389 Target range: 5550 -> 6438 255 : LeuLysTyrLeuArgLeuIleGluAsnSerTyrHisThrTyrLeuPheValSerMetGlyLe : 275 !!!!:!|||:!!!:! !||| ! !:!!:!! !!|||! !:!!|||:!!|||:!!||||| PheArgTyrValLysGluIleThrAlaAlaHisAspThrCysMetPheIleSerValGlyLe 5551 : TTCAGATACGTGAAAGAGATCACGGCCGCTCACGATACTTGCATGTTCATCTCGGTGGGACT : 5611 276 : uLeuIleMetAlaIleSerValSerLeuLeuGlu >>>> Target Intron 1 >>>> : 287 ||||!!:|||::!||||||..!|||||||||:!! 92 bp uLeuMetMetSerIleSerThrSerLeuLeuGln++ + 5612 : GCTGATGATGAGCATCAGCACTTCGTTGTTGCAGgt.........................a : 5737 288 : ValAlaAsnGlyLysAsnGlySerArgLysLeuValGlnAlaThrPheLeuPheAlaGlnL : 307 :!!:!!.!. !:!!:!!! !:!!..! ! !:!! ! ..!||||||!!! ||||||| +IleSerGluHisGluHisAspAlaGluTrpThrLeuTyrCysThrPhePheThrAlaGlnL 5738 : gATATCAGAACACGAACACGACGCAGAATGGACATTGTACTGCACGTTCTTCACGGCCCAGT : 5799 308 : euPheHisThrPheIleLeuThrValGlnGlyGlnPheValIleAsnGluLeuGlnAspVal : 327 ||!!.|||! !.!..!!|||..!||||||||||||||||||:!::!!! !! !.!.|||||| euLeuHisMetLeuPheLeuValValGlnGlyGlnPheValLeuAspAlaTyrAspAspVal 5800 : TGTTACACATGCTGTTCTTAGTCGTTCAGGGGCAGTTCGTGTTGGACGCGTACGACGATGTT : 5859 328 : TyrGluSer{Il} >>>> Target Intron 2 >>>> {e}TyrGluSerProTrpTy : 337 |||.!.!!!{||} 314 bp {|}||||||||| !!||||| TyrAsnThr{Il}++ ++{e}TyrGluSerThrTrpTy 5860 : TATAATACG{AT}gt.........................ag{A}TACGAATCGACATGGTA : 6203 338 : rThrPheSerProArgIleArgSerLeuTyrValLeuSerLeuArgSerCysLeuAsnPheP : 358 |!.!! !||| !!:!! !:!:!!||||||:!!|||:!!||||||||| !!|||||| !| rAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeuArgSerSerLeuAsnProP 6204 : CAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTACGGAGTAGCCTAAACCCTC : 6266 359 : roIleLeuThrAlaGlyGlyLeuIleValLeuAsnLeuGlnSerPheAlaGlu >>>> Ta : 376 ||:!:|||||||||||||||!!!|||..!|||||||||:!!!!!|||:!!||| roLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLysThrPheSerGlu++ 6267 : CCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAGACCTTCTCAGAGgt....... : 6322 377 : rget Intron 3 >>>> IleIleLysAlaAlaValSerTyrTyrThrValMetGlnThr : 389 77 bp |||||||||:!!:!!||||||||||||||||||||||||:!! ++IleIleLysSerSerValSerTyrTyrThrValMetGlnSer 6323 : ..................agATTATAAAATCATCCGTGTCTTACTATACGGTGATGCAATCG : 6436 vulgar: AfOr112_1 254 389 . LHQN01025741.1 5550 6438 + 321 M 32 96 5 0 2 I 0 88 3 0 2 M 44 132 S 0 2 5 0 2 I 0 310 3 0 2 S 1 1 M 44 132 5 0 2 I 0 73 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5551 6438 321 + . gene_id 1 ; sequence AfOr112_1 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 5551 5646 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5551 5646 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 5647 5648 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 5647 5738 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 5737 5738 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 5739 5872 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5739 5872 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 5873 5874 . + . intron_id 2 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 5873 6186 . + . intron_id 2 LHQN01025741.1 exonerate:protein2genome:local splice3 6185 6186 . + . intron_id 1 ; splice_site "aG" LHQN01025741.1 exonerate:protein2genome:local cds 6187 6319 . + . LHQN01025741.1 exonerate:protein2genome:local exon 6187 6319 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 6320 6321 . + . intron_id 3 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 6320 6396 . + . intron_id 3 LHQN01025741.1 exonerate:protein2genome:local splice3 6395 6396 . + . intron_id 2 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 6397 6438 . + . LHQN01025741.1 exonerate:protein2genome:local exon 6397 6438 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5551 6438 321 + . alignment_id 1 ; Query AfOr112_1 ; Align 5551 255 96 ; Align 5739 287 132 ; Align 6188 332 132 ; Align 6397 376 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 290 Query range: 128 -> 215 Target range: 4978 -> 5239 129 : LeuHisIleGlyIleThrGluThrPheMetLeuMetTrpProMetValProProIleLeuAs : 149 :!!||||||..!:!! !! .!!.!..!.:!! ! !|||.!.||| !!||||||||||| ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAs 4979 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGA : 5039 150 : pIleIleMetProLeuAsnValSerArgLysArgIleLeuLeuTyrProAlaTyrPheTrpL : 170 ||||:!!||||||||||||! !!!!||| !|||:!:!!!:!!||||||||||||!:!!::: pIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheV 5040 : CATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCG : 5102 171 : euAspAspGluLysTyrTyrValLeuLeuLeuGlyHisMetIleIleThrIleLeuMetIle : 190 !!|||!!:!!:||||||:!! !|||:!!:!!||||||||| !:!!..!:!::!!|||:!! alAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeu 5103 : TCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTT : 5162 191 : CysPheIlePheCysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLe : 211 !! !:!!||||||||||||||| ||||||||||||||||||||||||||||||||||| IleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLe 5163 : ATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATT : 5225 212 : uLeuAlaIleAla : 215 ||||||||||||| uLeuAlaIleAla 5226 : GTTGGCCATTGCA : 5239 vulgar: AfOr112_1 128 215 . LHQN01025741.1 4978 5239 + 290 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4979 5239 290 + . gene_id 2 ; sequence AfOr112_1 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4979 5239 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4979 5239 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4979 5239 290 + . alignment_id 2 ; Query AfOr112_1 ; Align 4979 129 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 233 Query range: 142 -> 268 Target range: 1609 -> 2062 143 : MetValProProIleLeuAspIleIleMetProLeuAsnValSerArgLysArgIleLeuLe : 163 !!:..!|||! !:!!||||||:!!||| ||| !|||! !|||||| ! ! !!!!:! IleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValAspPheIl 1610 : ATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTCAT : 1670 164 : uTyrProAlaTyrPheTrpLeuAspAspGluLysTyrTyrValLeuLeuLeuGlyHisMetI : 184 !||||||||||||!:! ! ||||||!!:|||:!!:!!||| !:!!|||:!!|||||||||: eTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHisMetL 1671 : TTATCCTGCATACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCACATGC : 1733 185 : leIleThrIleLeuMetIleCysPheIlePheCysAlaCysAspMetAsnTyrValTyrAla : 204 !! !..!||| !:!::!:! !|||:!!!:! !:!!||||||! !! !|||:!! !! ! euCysValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMetAsnIle 1734 : TCTGCGTGATAACTGTAGTGTTTTTCGTCTACATCTCCTGTGACACGATCTACATGAATATC : 1793 205 : ValGlnHisAlaCysGlyLeuLeuAlaIleAla{Ly} >>>> Target Intron 1 >> : 216 |||||||||||||||||||||||| !:!!:!!{ } 75 bp ValGlnHisAlaCysGlyLeuLeuAsnValSer{Gl}++ 1794 : GTGCAACACGCGTGCGGATTACTGAACGTCTCT{GG}gt....................... : 1833 217 : >> {s}TyrArgPheLysAsnValCysLysAspLeuAsnAspLysGluAspHisAlaMetP : 235 {!}:!! !!|||||| !.! :!! !:!!! ! !|||.!.!!: ! ! ++{y}HisCysPheLysTrpAlaValGluThrValIleThrLysAsnGluLysMetHisT 1834 : ..ag{G}CATTGCTTCAAGTGGGCAGTGGAAACTGTGATTACCAAGAACGAGAAGATGCACA : 1961 236 : roLeuGluLysIleLysTyrLysSerIleCysGluSerIleLysAlaHisGlnHisAlaLeu : 255 !! !! ! ! !! !|||!:!!.!:!: !!.!.||||||||||||||||||||||||:!! hrGluValAspAspThrTyrArgLysValArgHisSerIleLysAlaHisGlnHisAlaMet 1962 : CCGAAGTGGACGACACGTATAGAAAAGTGCGCCATTCGATCAAGGCTCATCAACACGCTATG : 2021 256 : LysTyrLeuArgLeuIleGluAsnSerTyrHisThrTyr : 268 :!!!! :!!||||||......|||...::: !!:! Glu***ValArgLeuPheArgAsnLysPheAspLeuPhe 2022 : GAGTAAGTAcgattatttagaaataaattcgacCTGTTT : 2062 vulgar: AfOr112_1 142 268 . LHQN01025741.1 1609 2062 + 233 M 73 219 S 0 2 5 0 2 I 0 71 3 0 2 S 1 1 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1610 2062 233 + . gene_id 3 ; sequence AfOr112_1 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 1610 1830 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1610 1830 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 1831 1832 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 1831 1905 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 1904 1905 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 1906 2062 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1906 2062 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1610 2062 233 + . alignment_id 3 ; Query AfOr112_1 ; Align 1610 143 219 ; Align 1907 217 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 218 Query range: 213 -> 390 Target range: 11805 -> 13062 214 : IleAlaLysTyrArgPheLysAsn<->ValCysLysAspLeuAsnAspLysGluAspHis : 232 :!! !!:!||||||||||||||| ||| !!:!!||| !!:!! |||! ! ! :!! ValHisArgTyrArgPheLysAsnSerValArgGluAspAsnSerValLysGlyLysTyr 11806 : GTTCACAGATACCGCTTCAAAAATTCAGTTCGCGAGGACAATAGCGTGAAGGGGAAGTAT : 11863 233 : AlaMetProLeuGluLysIleLysTyrLysSerIleCysGluSerIleLysAlaHisGln : 252 ! ! !! ! !||| !||||||!:! ||| ||||||:!!!.!|||||| PheAspHisTrpThrLysGluAlaTyrLysAsnAlaCysPheSerIleGlnGlyHisGln 11864 : TTCGACCACTGGACGAAAGAGGCGTACAAGAACGCGTGTTTCTCCATTCAGGGACATCAA : 11923 253 : HisAlaLeu{Ly} >>>> Target Intron 1 >>>> {s}TyrLeuArgLeuIle : 261 !.!|||:!!{!!} 170 bp {.} :!!!:!:!: ArgAlaIle{As}++ +-{n}LeuIleGlnValSer 11924 : CGTGCTATA{AA}gt.........................ac{T}CTGATCCAGGTgagc : 12120 262 : GluAsnSerTyrHisThrTyrLeuPheValSerMetGlyLeuLeuIleMetAlaIleSer : 281 :::||| !!:!:!!||| !!|||::: ...||| PheLeuPheSerLeuSerTyrAspTyrIleSerArgCysLeuIleCysGlyAsnPheSer 12121 : ttccttttttctctttcctacGATTACATTTCGCGTTGTTTAAtctgtggaaatttttca : 12180 282 : ValSerLeuLeuGluValAlaAsnGlyLysAsnGlySerArgLysLeuValGlnAlaThr : 301 ::: !:!!:!!::!!..!.! ! ! !! !!.! ! ! !.!...!!:! LeuPheSerAsnGlnLeuSerThrAlaAspLeuAspIleAsnPheTyrArgAsnCysSer 12181 : ctgttttcaaATCAGCTGAGTACGGCGGATTTAGATATAAACTTCTACAGAAACTGCAGT : 12240 302 : PheLeuPheAlaGlnLeuPheHisThrPheIleLeuThrValGlnGlyGlnPheValIle : 321 |||:!!!!...!||||||.!.||| !|||:!!:!!! !:!!|||||||||||||||:!: PheMetLeuCysGlnLeuMetHisLeuPheValIleMetLeuGlnGlyGlnPheValLeu 12241 : TTCATGTTGTGTCAACTGATGCATCTATTTGTCATCATGCTTCAGGGACAGTTCGTGCTG : 12300 322 : AsnGluLeuGlnAspValTyrGluSer{Il} >>>> Target Intron 2 >>>> : 331 :!!..!! !.!. :!!:!!! !:!!{||} 470 bp AspSerCysAspArgIleHisAlaAla{Il}++ ++ 12301 : GATTCGTGCGACAGAATTCACGCGGCG{AT}gt.........................ag : 12800 332 : {e}TyrGluSerProTrpTyrThrPheSerProArgIleArgSerLeuTyrValLeuSer : 350 {|}||||||||| !||||||||| !||| !!!:!! !!:!:!!|||||||||:!!:!! {e}TyrGluSerLeuTrpTyrThrSerSerSerLysThrGlnAlaLeuTyrValValAla 12801 : {A}TACGAATCATTATGGTACACAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCG : 12857 351 : LeuArgSerCysLeuAsnPheProIleLeuThrAlaGlyGlyLeuIleValLeuAsnLeu : 370 ||||||!!! !|||!.. ! !! !||||||||||||||||||:!: !||||||:!! LeuArgArgAsnLeuThrProThrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMet 12858 : TTACGAAGAAACCTAACACCTACCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATG : 12917 371 : GlnSerPheAlaGlu >>>> Target Intron 3 >>>> IleIleLysAlaAlaV : 381 !|||||| !||| 83 bp :!::!!||| !:!!| AlaSerPheLeuGlu++ ++ValValLysMetSerV 12918 : GCAAGTTTCTTGGAGgt.........................agGTGGTAAAAATGTCCG : 13033 382 : alSerTyrTyrThrValMetGlnThrThr : 390 |||||||||||||||||:!!:!!|||||| alSerTyrTyrThrValLeuLysThrThr 13034 : TATCCTATTATACGGTGTTGAAGACAACG : 13062 vulgar: AfOr112_1 213 390 . LHQN01025741.1 11805 13062 + 218 M 8 24 G 0 3 M 34 102 S 0 2 5 0 2 I 0 166 3 0 2 S 1 1 M 74 222 S 0 2 5 0 2 I 0 466 3 0 2 S 1 1 M 44 132 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11806 13062 218 + . gene_id 4 ; sequence AfOr112_1 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 11806 11936 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11806 11936 . + . insertions 3 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 11937 11938 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 11937 12106 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 12105 12106 . + . intron_id 0 ; splice_site "AC" LHQN01025741.1 exonerate:protein2genome:local cds 12107 12331 . + . LHQN01025741.1 exonerate:protein2genome:local exon 12107 12331 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 12332 12333 . + . intron_id 2 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 12332 12801 . + . intron_id 2 LHQN01025741.1 exonerate:protein2genome:local splice3 12800 12801 . + . intron_id 1 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 12802 12934 . + . LHQN01025741.1 exonerate:protein2genome:local exon 12802 12934 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 12935 12936 . + . intron_id 3 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 12935 13017 . + . intron_id 3 LHQN01025741.1 exonerate:protein2genome:local splice3 13016 13017 . + . intron_id 2 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 13018 13062 . + . LHQN01025741.1 exonerate:protein2genome:local exon 13018 13062 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11806 13062 218 + . alignment_id 4 ; Query AfOr112_1 ; Align 11806 214 24 ; Align 11833 222 102 ; Align 12108 257 222 ; Align 12803 332 132 ; Align 13018 376 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 331 -> 377 Target range: 9281 -> 9419 332 : TyrGluSerProTrpTyrThrPheSerProArgIleArgSerLeuTyrValLeuSerLeuAr : 352 |||||||||! !||||||!.!|||!!!||||||! !!:!:!!||||||||||||:!!||||| TyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeuAr 9282 : TACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTGAG : 9342 353 : gSerCysLeuAsnPheProIleLeuThrAlaGlyGlyLeuIleValLeuAsnLeuGlnSerP : 373 ||||||||||||| |||:!:|||||||||||||||:!!! ..!|||||||||!:!|||| gSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSerP 9343 : AAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATCGT : 9405 374 : heAlaGluIleIle : 377 ||||||||:!:||| heAlaGluValIle 9406 : TCGCAGAGGTGATT : 9419 vulgar: AfOr112_1 331 377 . LHQN01025741.1 9281 9419 + 177 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 9282 9419 177 + . gene_id 5 ; sequence AfOr112_1 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 9282 9419 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9282 9419 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 9282 9419 177 + . alignment_id 5 ; Query AfOr112_1 ; Align 9282 332 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 117 -> 188 Target range: 8856 -> 9069 118 : ArgArgGlyLeuPheIleThrIleSerTyrPheLeuHisIleGlyIleThrGluThrPheMe : 138 |||!.! !|||.!! ! !!:!:!!!!:! !|||:!: !:!! !!! !.!!.!..! ArgAsnTyrLeuIleSerProLeuThrPheThrAlaHisLeuPheLeuProAlaAlaIlePh 8857 : AGAAATTACCTTATTTCTCCTTTGACGTTTACAGCACATTTGTTCCTTCCCGCGGCCATATT : 8917 139 : tLeuMetTrpProMetValProProIleLeuAspIleIleMetProLeuAsnValSerArgL : 159 .||| !|||.!.!.!||| !|||||||||||| ! !||||||||| !!!!|||| eLeuCysValProPheAlaProIleIleLeuAspIleCysAlaProLeuAsnLysThrArgL 8918 : CTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTGCGCGCCACTGAACAAAACGAGAA : 8980 160 : ysArgIleLeuLeuTyrProAlaTyrPheTrpLeuAspAspGluLysTyrTyrValLeuLeu : 179 ||||| !!!:!!||||||||||||!:!|||:!!||| !|||:!!||||||:!!:!!:!! ysArgAlaPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMetIleMet 8981 : AACGTGCGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATGATAATG : 9040 180 : LeuGlyHisMetIleIleThrIleLeu : 188 :!! !|||!!:! :!:! !:!!:!! IleIleHisIleLysLeuLysValVal 9041 : ATAATACACATAAAGTTGAAGGTTGTG : 9069 vulgar: AfOr112_1 117 188 . LHQN01025741.1 8856 9069 + 151 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 8857 9069 151 + . gene_id 6 ; sequence AfOr112_1 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 8857 9069 . + . LHQN01025741.1 exonerate:protein2genome:local exon 8857 9069 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 8857 9069 151 + . alignment_id 6 ; Query AfOr112_1 ; Align 8857 118 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 313 -> 376 Target range: 2503 -> 2692 314 : ThrValGlnGlyGlnPheValIleAsnGluLeuGlnAspValTyrGluSerIleTyrGluSe : 334 ...::: .!!....!!||| !.....!!!!|||!!::!!!:!! !!! !|||...:! AlaIleIleSerSerIleValProArgArgPheGlnGluLeuPheValArgArgTyrSerAl 2504 : gcaattATCAGTTCTATCGTACCTCGAAGATTTCAGGAGTTGTTCGTTCGCAGATATAGCGC : 2564 335 : rProTrpTyrThrPheSerProArgIleArgSerLeuTyrValLeuSerLeuArgSerCysL : 355 ! !||||||!.! !|||||||||! !:!!!!||||||||||||:!!||||||!!! !!| aLysTrpTyrAsnSerSerProArgThrGlnThrLeuTyrValLeuAlaLeuArgArgSerL 2565 : AAAATGGTACAACAGTTCGCCGAGAACGCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCT : 2627 356 : euAsnPheProIleLeuThrAlaGlyGlyLeuIleValLeuAsnLeuGlnSerPheAlaGlu : 375 ||!.! |||:!:||||||||||||||||||||| !|||||||||:!!!!!||||||||| euThrProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGlu 2628 : TGACTCCGCCATTGCTCACTGCGGGAGGACTGATTTCCTTGAATTTGGAGACTTTTGCCGAG : 2687 376 : Ile : 376 :!! Val 2688 : GTA : 2692 vulgar: AfOr112_1 313 376 . LHQN01025741.1 2503 2692 + 148 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 2504 2692 148 + . gene_id 7 ; sequence AfOr112_1 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 2504 2692 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2504 2692 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 2504 2692 148 + . alignment_id 7 ; Query AfOr112_1 ; Align 2504 314 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 132 -> 215 Target range: 11483 -> 11732 133 : IleThrGluThrPheMetLeuMetTrpProMetValProProIleLeuAspIleIleMet : 152 ||| !..! !!!..!.:!!... !||| !..! !!! !:!::!!:!! !! ! IleCysSerPheLeuPheIleGlnValProTrpThrThrArgLeuValAsnSerTyrLys 11484 : ATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGATTGGTGAACTCGTACAAG : 11541 153 : ProLeuAsnValSerArgLysArgIleLeuLeuTyrProAlaTyrPheTrpLeuAspAsp : 172 !!! !|||:!!!!!! !!.. ! !!!!:!! |||!.!|||!:!!:::!!|||!!: ThrGlnAsnIleThrProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGlu 11542 : ACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAA : 11601 173 : GluLysTyrTyrValLeuLeuLeuGlyHisMetIleIleThrIleLeuMetIleCysPhe : 192 ! !:!!|||||| !! !:!!:!! !||| ! !|||:!!|||!!::!! ! ValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeuIleValValVal 11602 : GTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTG : 11661 193 : IlePheCysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeu : 212 :!:!:!||||||||||||! !:!|||:!! !|||||||||.!!|||||||||!!! ValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPhe 11662 : GTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTC : 11721 213 : AlaIleAla : 215 |||:!:||| AlaValAla 11722 : GCCGTGGCC : 11732 vulgar: AfOr112_1 132 215 . LHQN01025741.1 11483 11732 + 145 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11484 11732 145 + . gene_id 8 ; sequence AfOr112_1 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11484 11732 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11484 11732 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11484 11732 145 + . alignment_id 8 ; Query AfOr112_1 ; Align 11484 133 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 0 -> 50 Target range: 4356 -> 4506 1 : MetAspAlaArgThrValGluLysAsnPheLeuLysValAsnLysIlePheGlyLeuIleTh : 21 |||||||||! !|||:!!||||||..!!:!|||!:!:!!||||||! .!!|||:!!:!!|| MetAspAlaIleThrLeuGluLysArgTyrLeuArgIleAsnLysLysLeuGlyMetLeuTh 4357 : ATGGATGCGATCACGTTAGAGAAACGTTACTTGAGAATCAACAAGAAGCTCGGCATGCTAAC : 4417 22 : rGlyValTrpProTyrGlnAsnTyrArgMetLysMetAlaGluArgPheLeuSerValThrV : 42 |||||||||||||||||||!!. ! ! ||| ! !...||| :!! !:!! !| rGlyValTrpProTyrGlnLysSerSerProLysTrpIleSerArgThrValValLeuPheV 4418 : CGGTGTGTGGCCCTATCAAAAGAGCTCGCCAAAATGGATCAGTCGAACGGTAGTGCTCTTTG : 4480 43 : alMetMetSerGlyPheValThrGln : 50 ||!!:!!: !! !!!:!||||||||| alIleIleProCysTyrValThrGln 4481 : TGATAATACCTTGTTATGTTACACAG : 4506 vulgar: AfOr112_1 0 50 . LHQN01025741.1 4356 4506 + 121 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4357 4506 121 + . gene_id 9 ; sequence AfOr112_1 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4357 4506 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4357 4506 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4357 4506 121 + . alignment_id 9 ; Query AfOr112_1 ; Align 4357 1 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 295 -> 331 Target range: 9060 -> 9168 296 : LysLeuValGlnAlaThrPheLeuPheAlaGlnLeuPheHisThrPheIleLeuThrValGl : 316 |||:!!|||!!.!.!||||||!!! !!!.!||| !||||||..!|||.!!|||!.!||||| LysValValHisGlyThrPhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGl 9061 : AAGGTTGTGCACGGAACGTTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCA : 9121 317 : nGlyGlnPheValIleAsnGluLeuGlnAspValTyrGluSerIle : 331 |||||||||||||||||||! !!!!.!.!!::!!|||!!:!.!!!: nGlyGlnPheValIleAsnAlaPheAspGluLeuTyrAspLysMet 9122 : GGGACAATTTGTGATAAACGCGTTCGACGAACTGTACGACAAGATG : 9168 vulgar: AfOr112_1 295 331 . LHQN01025741.1 9060 9168 + 100 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 9061 9168 100 + . gene_id 10 ; sequence AfOr112_1 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 9061 9168 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9061 9168 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 9061 9168 100 + . alignment_id 10 ; Query AfOr112_1 ; Align 9061 296 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr105 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 156 -> 242 Target range: 4999 -> 5254 157 : ValIlePheLeuSerLeuProLeuCysAsnProIleLeuAspIleIleLeuProLeuAsnGl : 177 !.!:!!|||:!!!!!||||||!!! :::|||||||||||||||:!!:!!||||||||||| AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGl 5000 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGA : 5060 178 : uThrArgProArgGlnAsnIlePheAsnValAsnTyrIleIleLeuAspAsnTyrGluTyrP : 198 ||||||| !!||| ! !:!!!:! !.! !!|||.!!:!! |||.!. !!:!!||| uThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal---AspGluAspLysTyrH 5061 : GACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC---GACGAGGACAAATATC : 5120 199 : heTyrIleValTyrValHisLeuSerCysSerAlaAlaIleIleValIleIleIleIleSer : 218 !|||:!::!! ! !|||:!!! ! ! !!.!!.!!!::!!:!! !:!!.!! !:!! isTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 5121 : ATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 5180 219 : ValAspSerLeuTyrIleSerIleIleTyrHisAlaCysGlyLeuPheAlaAlaCysGlyTy : 239 !|||:!! !|||:!:! ! !:!: ! |||||||||||||||!!.||| !...|||!! CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly** 5181 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTA : 5243 240 : rGlnIleGln : 242 !:!!||| *LeuValGln 5244 : ATTAGTTCAA : 5254 vulgar: AfOr105 156 242 . LHQN01025741.1 4999 5254 + 158 M 35 105 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5000 5254 158 + . gene_id 1 ; sequence AfOr105 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5000 5254 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5000 5254 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 5000 5254 158 + . alignment_id 1 ; Query AfOr105 ; Align 5000 157 105 ; Align 5105 193 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr105 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 187 -> 238 Target range: 11582 -> 11735 188 : AsnTyrIleIleLeuAspAsnTyrGluTyrPheTyrIleValTyrValHisLeuSerCys : 207 ...||| !.!!:!!|||.!. ||||||!:!||| !:!! :!!||| !!!!||| GlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCys 11583 : GGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGC : 11640 208 : SerAlaAlaIleIleValIleIleIleIleSerValAspSerLeuTyrIleSerIleIle : 227 !!!!.! !|||:!!|||:!::!: ! !:!! !|||!!! !|||!!: !:!::!: ThrValLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuVal 11641 : ACAGTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTG : 11700 228 : TyrHisAlaCysGlyLeuPheAlaAlaCysGly : 238 ! |||.!!|||||||||||||||!.!..!||| GlnHisThrCysGlyLeuPheAlaValAlaGly 11701 : CAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 11735 vulgar: AfOr105 187 238 . LHQN01025741.1 11582 11735 + 123 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11583 11735 123 + . gene_id 2 ; sequence AfOr105 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11583 11735 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11583 11735 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11583 11735 123 + . alignment_id 2 ; Query AfOr105 ; Align 11583 188 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr105 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 187 -> 238 Target range: 1140 -> 987 188 : AsnTyrIleIleLeuAspAsnTyrGluTyrPheTyrIleValTyrValHisLeuSerCysSe : 208 ...||| !.!!:!!|||.!. ||||||!:!||| !:!! :!!||| !!!!|||!! GlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysTh 1140 : GGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCAC : 1080 209 : rAlaAlaIleIleValIleIleIleIleSerValAspSerLeuTyrIleSerIleIleTyrH : 229 !!.! !|||:!!|||:!::!: ! !:!! !|||!!! !|||!!: !:!::!: ! | rValLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnH 1079 : AGTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAAC : 1017 230 : isAlaCysGlyLeuPheAlaAlaCysGly : 238 ||.!!|||||||||||||||!.!..!||| isThrCysGlyLeuPheAlaValAlaGly 1016 : ACACTTGCGGACTGTTCGCCGTGGCCGGG : 988 vulgar: AfOr105 187 238 . LHQN01027734.1 1140 987 - 123 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 988 1140 123 - . gene_id 1 ; sequence AfOr105 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 988 1140 . - . LHQN01027734.1 exonerate:protein2genome:local exon 988 1140 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 988 1140 123 - . alignment_id 1 ; Query AfOr105 ; Align 1141 188 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 247 Query range: 299 -> 387 Target range: 3017 -> 2555 300 : TyrValIleAlaGlnValValHisIlePhePheLeuThrAlaGlnGlyGlnPheValIleAs : 320 !:! !!:!!!.!|||!.! !!|||:!!|||||||||!.!!.!||||||||||||||||||:! PhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGlnGlyGlnPheValIleAs 3017 : TTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGGACAATTTGTGATAAA : 2957 321 : pSerHisGluAsnValTyrTrpAsp{Me} >>>> Target Intron 1 >>>> {t}T : 330 !:!! !!!:.!.:!!||| ! {!!} 113 bp {:}| nAlaPheAspGluLeuTyrAspLys{Il}++ ++{e}T 2956 : CGCGTTCGACGAACTGTACGACAAG{AT}gt.........................ag{A}T : 2814 331 : yrGluProTyrTrpTyrAsnLeuGlnSerLysMetGlnAlaMetPheValLeuIleLeuArg : 350 ||||| !! ! |||||||||!!! !!!:!! ||||||:!!!:!|||||| !|||||| yrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeuArg 2813 : ACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTGAGA : 2754 351 : ArgAsnLeuAsnProProLeuLeuThrAlaGlyGlyLeuValGlnLeuAsnLeuAsnThrPh : 371 !!! !||||||||||||||||||||||||||||||:!!..! !|||||||||...:!!|| SerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSerPh 2753 : AGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATCGTT : 2691 372 : eAlaLys >>>> Target Intron 2 >>>> ValValLysThrSerValSerTyrPh : 382 ||||:!! 85 bp :!!:!!|||.!!||||||||||||!: eAlaGlu++ ++IleIleLysAlaSerValSerTyrTy 2690 : CGCAGAGgt.........................agATCATCAAAGCATCTGTTTCCTACTA : 2573 383 : eThrValLeuLysSer : 387 !||||||:!!:!!!!! rThrValMetGlnThr 2572 : CACGGTGATGCAGACC : 2556 vulgar: AfOr106 299 387 . LHQN01027734.1 3017 2555 - 247 M 29 87 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 44 132 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 2556 3017 247 - . gene_id 1 ; sequence AfOr106 ; gene_orientation + LHQN01027734.1 exonerate:protein2genome:local cds 2929 3017 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2929 3017 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 2927 2928 . - . intron_id 1 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 2816 2928 . - . intron_id 1 LHQN01027734.1 exonerate:protein2genome:local splice3 2816 2817 . - . intron_id 0 ; splice_site "AG" LHQN01027734.1 exonerate:protein2genome:local cds 2683 2815 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2683 2815 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 2681 2682 . - . intron_id 2 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 2598 2682 . - . intron_id 2 LHQN01027734.1 exonerate:protein2genome:local splice3 2598 2599 . - . intron_id 1 ; splice_site "AG" LHQN01027734.1 exonerate:protein2genome:local cds 2556 2597 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2556 2597 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 2556 3017 247 - . alignment_id 1 ; Query AfOr106 ; Align 3018 300 87 ; Align 2815 330 132 ; Align 2598 374 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 166 Query range: 124 -> 215 Target range: 1257 -> 987 125 : TyrValValAsnAlaTyrPheCysSerIleLeuPheLeuLeuLeuProPheThrProIleLe : 145 !:! !||||||||||||.!!||||||.!!||||||:!!! !:!!|||!::||| !! !:! PheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArgMe 1257 : TTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGAAT : 1197 146 : uLeuAspIlePheIleProLeuAsnGluSerArgProArgValGlnMetTyrProAlaTyrT : 166 !:!!:!! !:!! !!! !||| !!!!! ! ! ! ! :!: |||!.!|||| tValAsnSerTyrLysThrGlnAsnIleThrProSerLeuProValValValProGlyTyrT 1196 : GGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGATATT : 1134 167 : yrTyrIleGluAsnGluAlaAspTyrTyrTyrProIleLeuIlePheSerIleValSerLeu : 186 ||!:!:!!!!: |||!.!!!:||||||||| !|||:!!:!! !.!!! !!!!:!! yrPheValAsp---GluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrVal 1133 : ACTTCGTCGAC---GAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTT : 1077 187 : LeuThrAlaMetCysValPheIleAlaThrAspThrMetLeuIleTyrIleValGlnHisAl : 207 |||! !!.!:!! |||!:! !||| !||||||! ! !!!: :!:|||||||||.! LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisTh 1076 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACAC : 1014 208 : aCysGlyLeuLeuAlaLeuAlaGly : 215 !|||||||||!!!|||:!!|||||| rCysGlyLeuPheAlaValAlaGly 1013 : TTGCGGACTGTTCGCCGTGGCCGGG : 988 vulgar: AfOr106 124 215 . LHQN01027734.1 1257 987 - 166 M 45 135 G 1 0 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 988 1257 166 - . gene_id 2 ; sequence AfOr106 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 988 1257 . - . LHQN01027734.1 exonerate:protein2genome:local exon 988 1257 . - . insertions 0 ; deletions 1 LHQN01027734.1 exonerate:protein2genome:local similarity 988 1257 166 - . alignment_id 2 ; Query AfOr106 ; Align 1258 125 135 ; Align 1123 171 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 274 Query range: 309 -> 398 Target range: 3020 -> 2555 310 : AlaPheThrValGlyGlnLeuThrHisLeuPhePheLeuThrIleMetGlyGlnPheLeuIl : 330 .!!||| !||||||||| ! !|||:!!|||||||||!.!:!!..!|||||||||:!!|| ThrPhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGlnGlyGlnPheValIl 3020 : ACGTTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGGACAATTTGTGAT : 2960 331 : eAsnAlaAsnAspGluIlePheLysThr{Va} >>>> Target Intron 1 >>>> { : 340 ||||||| !||||||:!:!:! ! ! !{:!} 113 bp { eAsnAlaPheAspGluLeuTyrAspLys{Il}++ ++{ 2959 : AAACGCGTTCGACGAACTGTACGACAAG{AT}gt.........................ag{ : 2815 341 : l}TyrGluAlaTyrTrpTyrAsnGlySerSerArgThrGlnSerLeuTyrIleLeuValLeu : 360 !}||||||:!! ! ||||||||| !!!! !!|||||||||:!!||||||:!!|||!.!||| e}TyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeu 2814 : A}TACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTG : 2757 361 : ArgLysCysLeuSerProProLysLeuThrGlyGlyGlyLeuValAlaLeuAsnLeuAspSe : 381 |||!..||||||!:!|||||| !||||||!.!||||||:!!..!.!!||||||||| || ArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSe 2756 : AGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATC : 2694 382 : rPheLeuGln >>>> Target Intron 2 >>>> IleLeuLysAlaSerPheSerTy : 392 |||| !:!! 85 bp |||:!!||||||||| !!||||| rPheAlaGlu++ ++IleIleLysAlaSerValSerTy 2693 : GTTCGCAGAGgt.........................agATCATCAAAGCATCTGTTTCCTA : 2576 393 : rTyrThrValPheArgSer : 398 ||||||||||.!.!:!!!! rTyrThrValMetGlnThr 2575 : CTACACGGTGATGCAGACC : 2556 vulgar: AfOr111 309 398 . LHQN01027734.1 3020 2555 - 274 M 30 90 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 44 132 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 2556 3020 274 - . gene_id 1 ; sequence AfOr111 ; gene_orientation + LHQN01027734.1 exonerate:protein2genome:local cds 2929 3020 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2929 3020 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 2927 2928 . - . intron_id 1 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 2816 2928 . - . intron_id 1 LHQN01027734.1 exonerate:protein2genome:local splice3 2816 2817 . - . intron_id 0 ; splice_site "AG" LHQN01027734.1 exonerate:protein2genome:local cds 2683 2815 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2683 2815 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 2681 2682 . - . intron_id 2 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 2598 2682 . - . intron_id 2 LHQN01027734.1 exonerate:protein2genome:local splice3 2598 2599 . - . intron_id 1 ; splice_site "AG" LHQN01027734.1 exonerate:protein2genome:local cds 2556 2597 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2556 2597 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 2556 3020 274 - . alignment_id 1 ; Query AfOr111 ; Align 3021 310 90 ; Align 2815 341 132 ; Align 2598 385 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 199 Query range: 125 -> 224 Target range: 1284 -> 987 126 : LysArgAlaLysValLeuSerThrValTyrGluValSerIlePhePheCysGlyPheMetPh : 146 |||::: ! !..!|||..! !..!!:! !|||!:! !:!.!!|||..!|||:!!|| LysGlnLeuAlaThrLeuAspTrpThrPheProValAsnAlaTyrIleCysSerPheLeuPh 1284 : aaacaattAGCAACTCTGGATTGGACATTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTT : 1224 147 : eLeuLeuIleProSerIleProProIleLeuAsnIleIleSerProLeuAsnValSerArgG : 167 |:!!! !:!:|||!!!! !!! !!!::!!||| !!.! !!! !|||:!!!!!! !. eIleGlnValProTrpThrThrArgMetValAsnSerTyrLysThrGlnAsnIleThrProS 1223 : CATACAAGTGCCATGGACGACCCGAATGGTGAACTCGTACAAGACACAGAATATAACGCCAA : 1161 168 : lyArgGluLeuIleTyrProSerTyrTyrPheValAspGluGluLysTyrTyrTyrProIle : 187 !! ! !:!!:!! |||.!!||||||||||||||||||! !:!!||||||||| !||| erLeuProValValValProGlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIle 1160 : GTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATC : 1101 188 : LeuMetHisMetIleAlaValAlaLeuIleLeuThrSerValTyrValAlaCysAspThrTy : 208 :!!:!:||| ! ..!..!!.!||||||:!!..! !|||||| !|||||||||||| IleLeuHisGlyThrCysThrValLeuIleValValValValTyrCysAlaCysAspThrSe 1100 : ATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAG : 1038 209 : rLeuValTyrIleValHisHisGlyCysAlaLeuLeuAlaIleSerGly : 224 !! !:!! :!:|||!!.||| !|||!.!|||!!!|||:!::!!||| rTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly 1037 : TTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 988 vulgar: AfOr111 125 224 . LHQN01027734.1 1284 987 - 199 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 988 1284 199 - . gene_id 2 ; sequence AfOr111 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 988 1284 . - . LHQN01027734.1 exonerate:protein2genome:local exon 988 1284 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 988 1284 199 - . alignment_id 2 ; Query AfOr111 ; Align 1285 126 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 326 Query range: 295 -> 389 Target range: 3035 -> 2555 296 : LysLeuValGlnAlaThrPheLeuPheAlaGlnLeuPheHisThrPheIleLeuThrValGl : 316 |||:!!|||!!.!.!||||||!!! !!!.!||| !||||||..!|||.!!|||!.!||||| LysValValHisGlyThrPhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGl 3035 : AAGGTTGTGCACGGAACGTTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCA : 2975 317 : nGlyGlnPheValIleAsnGluLeuGlnAspValTyrGluSer{Il} >>>> Target I : 331 |||||||||||||||||||! !!!!.!.!!::!!|||!!:!.!{||} 113 nGlyGlnPheValIleAsnAlaPheAspGluLeuTyrAspLys{Il}++ 2974 : GGGACAATTTGTGATAAACGCGTTCGACGAACTGTACGACAAG{AT}gt............. : 2926 332 : ntron 1 >>>> {e}TyrGluSerProTrpTyrThrPheSerProArgIleArgSerLeu : 346 bp {|}|||||||||! !||||||!.!|||!!!||||||! !!:!:!!||| ++{e}TyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeu 2925 : ............ag{A}TACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTG : 2772 347 : TyrValLeuSerLeuArgSerCysLeuAsnPheProIleLeuThrAlaGlyGlyLeuIleVa : 367 |||||||||:!!|||||||||||||||||| |||:!:|||||||||||||||:!!! .. TyrValLeuAlaLeuArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrTh 2771 : TATGTATTGGCATTGAGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGAC : 2709 368 : lLeuAsnLeuGlnSerPheAlaGlu >>>> Target Intron 2 >>>> IleIleLy : 378 !|||||||||!:!|||||||||||| 85 bp |||||||| rLeuAsnLeuArgSerPheAlaGlu++ ++IleIleLy 2708 : GTTGAATCTACGATCGTTCGCAGAGgt.........................agATCATCAA : 2591 379 : sAlaAlaValSerTyrTyrThrValMetGlnThr : 389 ||||:!!||||||||||||||||||||||||||| sAlaSerValSerTyrTyrThrValMetGlnThr 2590 : AGCATCTGTTTCCTACTACACGGTGATGCAGACC : 2556 vulgar: AfOr112_1 295 389 . LHQN01027734.1 3035 2555 - 326 M 35 105 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 44 132 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 2556 3035 326 - . gene_id 1 ; sequence AfOr112_1 ; gene_orientation + LHQN01027734.1 exonerate:protein2genome:local cds 2929 3035 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2929 3035 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 2927 2928 . - . intron_id 1 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 2816 2928 . - . intron_id 1 LHQN01027734.1 exonerate:protein2genome:local splice3 2816 2817 . - . intron_id 0 ; splice_site "AG" LHQN01027734.1 exonerate:protein2genome:local cds 2683 2815 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2683 2815 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 2681 2682 . - . intron_id 2 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 2598 2682 . - . intron_id 2 LHQN01027734.1 exonerate:protein2genome:local splice3 2598 2599 . - . intron_id 1 ; splice_site "AG" LHQN01027734.1 exonerate:protein2genome:local cds 2556 2597 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2556 2597 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 2556 3035 326 - . alignment_id 1 ; Query AfOr112_1 ; Align 3036 296 105 ; Align 2815 332 132 ; Align 2598 376 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 227 Query range: 154 -> 331 Target range: 1173 -> 366 155 : AsnValSerArgLysArgIleLeuLeuTyrProAlaTyrPheTrpLeuAspAspGluLysTy : 175 |||:!!!!!! !!.. ! !:!!:!! |||!.!|||!:!!:::!!|||!!:! !:!!|| AsnIleThrProSerLeuProValValValProGlyTyrTyrPheValAspGluValGluTy 1173 : AATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATA : 1113 176 : rTyrValLeuLeuLeuGlyHisMetIleIleThrIleLeuMetIleCysPheIlePheCysA : 196 |||| !! !:!!:!! !||| ! !|||:!!|||!!::!! ! :!:!:!|||| rTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeuIleValValValValTyrCysA 1112 : CTATTATTACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTG : 1050 197 : laCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla{Ly : 216 ||||||||! !:!|||:!! !|||||||||.!!|||||||||!!!|||:!:|||{ laCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAla{Gl 1049 : CCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCC{GG : 990 217 : } >>>> Target Intron 1 >>>> {s}TyrArgPheLysAsn<->ValCysLysAs : 225 } 79 bp {!}||||||||||||||| :!!|||:!!|| }++ ++{y}TyrArgPheLysAsnSerIleCysGluAs 989 : }gt.........................ag{A}TACCGCTTCAAGAATTCAATTTGCGAGGA : 881 226 : pLeuAsnAspLysGluAspHisAlaMetProLeuGluLysIleLysTyrLysSerIleCysG : 246 | !!:!! |||! ! ! :!! ! ! !! ! !||| !||||||!:! ||| pAsnSerValLysGlyLysTyrPheAspHisTrpThrLysGluAlaTyrLysAsnAlaCysP 880 : CAATAGCGTGAAGGGGAAGTATTTCGACCACTGGACGAAAGAGGCGTACAAGAACGCGTGTT : 818 247 : luSerIleLysAlaHisGlnHisAlaLeuLysTyrLeuArgLeuIleGluAsnSerTyrHis : 266 ||||||:!!!.!||||||!.!|||:!!|||! :!! ! !||| heSerIleGlnGlyHisGlnArgAlaIleLysSerValLeuThrIlePheValCysLeuPhe 817 : TCTCCATTCAGGGACATCAACGTGCTATAAAGTCAGTATTGACGAtctttgtttgtttgttc : 758 267 : ThrTyrLeu >>>> Target Intron 2 >>>> PheValSerMetGlyLeuLeuIle : 277 ...:::... 194 bp !:!:!!||| !!|||::: ValPhePhe++ +-TyrIleSerArgCysLeuIleCys 757 : gtttttttcgt.........................acTACATTTCGCGTTGTTTAAtctgt : 531 278 : MetAlaIleSerValSerLeuLeuGluValAlaAsnGlyLysAsnGlySerArgLysLeuVa : 298 ...|||::: !:!!:!!::!!....! ! !! !! ! ! ! ! GlyAsnPheSerLeuPheSerAsnGlnLeuSerThrSerAspPheAspIleAspPheTyrAr 530 : ggaaatttttcactgttttcaaATCAGCTGAGTACGTCGGATTTCGACATAGACTTCTACAG : 468 299 : lGlnAlaThrPheLeuPheAlaGlnLeuPheHisThrPheIleLeuThrValGlnGlyGlnP : 319 ! ! ..!!:!||| !!!...!||||||.!.||| !|||:!!:!!! !:!!|||||||||| gTyrCysSerPheThrLeuCysGlnLeuMetHisLeuPheValIleMetLeuGlnGlyGlnP 467 : ATATTGCAGTTTTACGTTGTGTCAACTGATGCACCTGTTCGTTATCATGCTTCAGGGACAGT : 405 320 : heValIleAsnGluLeuGlnAspValTyrGluSerIle : 331 |||||:!::!!..!! !:!! :!!:!!|||:!!!!: heValLeuAspSerCysGluArgIleHisGluAlaMet 404 : TCGTGCTGGATTCGTGCGAGAGAATTCACGAGGCGATG : 367 vulgar: AfOr112_1 154 331 . LHQN01027734.1 1173 366 - 227 M 61 183 S 0 2 5 0 2 I 0 75 3 0 2 S 1 1 M 5 15 G 0 3 M 48 144 5 0 2 I 0 190 3 0 2 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 367 1173 227 - . gene_id 2 ; sequence AfOr112_1 ; gene_orientation + LHQN01027734.1 exonerate:protein2genome:local cds 989 1173 . - . LHQN01027734.1 exonerate:protein2genome:local exon 989 1173 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 987 988 . - . intron_id 1 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 910 988 . - . intron_id 1 LHQN01027734.1 exonerate:protein2genome:local splice3 910 911 . - . intron_id 0 ; splice_site "AG" LHQN01027734.1 exonerate:protein2genome:local cds 747 909 . - . LHQN01027734.1 exonerate:protein2genome:local exon 747 909 . - . insertions 3 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 745 746 . - . intron_id 2 ; splice_site "gT" LHQN01027734.1 exonerate:protein2genome:local intron 553 746 . - . intron_id 2 LHQN01027734.1 exonerate:protein2genome:local splice3 553 554 . - . intron_id 1 ; splice_site "AC" LHQN01027734.1 exonerate:protein2genome:local cds 367 552 . - . LHQN01027734.1 exonerate:protein2genome:local exon 367 552 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 367 1173 227 - . alignment_id 2 ; Query AfOr112_1 ; Align 1174 155 183 ; Align 909 217 15 ; Align 891 222 144 ; Align 553 270 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 262 Query range: 292 -> 387 Target range: 4900 -> 4224 293 : GluThrAsnGlnTyrTyrGlyTyrValIleAlaGlnValValHisIlePhePheLeuThrAl : 313 ||| !!.. !|||! ! !!:! !!! ||||||:!!:!!|||!!:.!.||||||..!!. GluTrpThrLeuTyrCysThrPhePheThrAlaGlnLeuLeuHisMetLeuPheLeuValVa 4900 : GAATGGACATTGTACTGCACGTTCTTCACGGCCCAGTTGTTACACATGCTGTTCTTAGTCGT : 4840 314 : aGlnGlyGlnPheValIleAspSerHisGluAsnValTyrTrpAsp{Me} >>>> Targe : 329 !|||||||||||||||:!:|||:!!:!!!!::!!|||||| {!!} lGlnGlyGlnPheValLeuAspAlaTyrAspAspValTyrAsnThr{Il}++ 4839 : TCAGGGGCAGTTCGTGTTGGACGCGTACGACGATGTTTATAATACG{AT}gt.......... : 4788 330 : t Intron 1 >>>> {t}TyrGluProTyrTrpTyrAsnLeuGlnSerLysMetGlnAla : 343 314 bp {:}|||||| !! |||||||||! !..!!!!|||! !|||||| ++{e}TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAla 4787 : ...............ag{A}TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCG : 4436 344 : MetPheValLeuIleLeuArgArgAsnLeuAsnProProLeuLeuThrAlaGlyGlyLeuVa : 364 :!:!:!:!!||| ||||||!!!!:!||||||||||||||||||||||||||||||!!!:! LeuTyrIleLeuAlaLeuArgSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIl 4435 : TTATACATATTAGCGTTACGGAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTAT : 4373 365 : lGlnLeuAsnLeuAsnThrPheAlaLys >>>> Target Intron 2 >>>> ValVa : 375 ! !|||||||||!!.||||||:!!:!! 77 bp :!!:! eThrLeuAsnLeuLysThrPheSerGlu++ ++IleIl 4372 : AACGTTGAATTTAAAGACCTTCTCAGAGgt.........................agATTAT : 4263 376 : lLysThrSerValSerTyrPheThrValLeuLysSer : 387 !|||:!!||||||||||||!:!||||||:!!:!!||| eLysSerSerValSerTyrTyrThrValMetGlnSer 4262 : AAAATCATCCGTGTCTTACTATACGGTGATGCAATCG : 4225 vulgar: AfOr106 292 387 . LHQN01028732.1 4900 4224 - 262 M 36 108 S 0 2 5 0 2 I 0 310 3 0 2 S 1 1 M 44 132 5 0 2 I 0 73 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 4225 4900 262 - . gene_id 1 ; sequence AfOr106 ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 4791 4900 . - . LHQN01028732.1 exonerate:protein2genome:local exon 4791 4900 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 4789 4790 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 4477 4790 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 4477 4478 . - . intron_id 0 ; splice_site "aG" LHQN01028732.1 exonerate:protein2genome:local cds 4344 4476 . - . LHQN01028732.1 exonerate:protein2genome:local exon 4344 4476 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 4342 4343 . - . intron_id 2 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 4267 4343 . - . intron_id 2 LHQN01028732.1 exonerate:protein2genome:local splice3 4267 4268 . - . intron_id 1 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 4225 4266 . - . LHQN01028732.1 exonerate:protein2genome:local exon 4225 4266 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 4225 4900 262 - . alignment_id 1 ; Query AfOr106 ; Align 4901 293 108 ; Align 4476 330 132 ; Align 4267 374 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 197 Query range: 126 -> 215 Target range: 5684 -> 5420 127 : ValAsnAlaTyrPheCysSerIleLeuPheLeuLeuLeuProPheThrProIleLeuLeuAs : 147 |||:!! !! !!.|||:!! !||||||:!!! !|||||||||..! !! :!!||||| ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAs 5684 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGA : 5624 148 : pIlePheIleProLeuAsnGluSerArgProArgValGlnMetTyrProAlaTyrTyrTyrI : 168 ||||.!!!!:||||||||||||!!!||| !!|||:!! :!:|||||||||||||||!:!: pIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheV 5623 : CATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCG : 5561 169 : leGluAsnGluAlaAspTyrTyrTyrProIleLeuIlePheSerIleValSerLeuLeuThr : 188 !!!!: |||! ! ! ||| !||| !|||:!! !! ! !:!! !:!!:!!! ! alAsp---GluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMet 5560 : TCGAC---GAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATG : 5504 189 : AlaMetCysValPheIleAlaThrAspThrMetLeuIleTyrIleValGlnHisAlaCysGl : 209 !!!:! !|||||| !||| !|||.!!! ! !:!:||| !||||||||||||||||| LeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGl 5503 : CTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGG : 5441 210 : yLeuLeuAlaLeuAlaGly : 215 ||||||||||:!!|||||| yLeuLeuAlaIleAlaGly 5440 : ATTGTTGGCCATTGCAGGG : 5421 vulgar: AfOr106 126 215 . LHQN01028732.1 5684 5420 - 197 M 43 129 G 1 0 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5684 197 - . gene_id 2 ; sequence AfOr106 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5684 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5684 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5684 197 - . alignment_id 2 ; Query AfOr106 ; Align 5685 127 129 ; Align 5556 171 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 179 Query range: 329 -> 387 Target range: 7764 -> 7511 330 : TyrGluProTyrTrpTyrAsnLeuGlnSerLysMetGlnAlaMetPheValLeuIleLeuAr : 350 |||... !! ||||||||| ! ! !!|||:!!||||||:!:!:!|||||| !||||| TyrSerAlaThrTrpTyrAsnGlyThrProLysValGlnAlaLeuTyrValLeuAlaLeuAr 7764 : TACAGCGCTACATGGTACAACGGTACACCGAAAGTGCAAGCTTTATACGTGCTAGCTTTGAG : 7704 351 : gArgAsnLeuAsnProProLeuLeuThrAlaGlyGlyLeuValGlnLeuAsnLeuAsnThrP : 371 ||||||||||!.!|||||||||:!!|||||||||||||||:!!...|||||||||.!.|||| gArgAsnLeuThrProProLeuIleThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrP 7703 : AAGGAACTTGACTCCACCGCTGATTACTGCCGGAGGACTGATCTCCTTGAATTTGGAGACTT : 7641 372 : heAlaLys >>>> Target Intron 1 >>>> ValValLysThrSerValSerTyrP : 382 |||||:!! 79 bp :!!:!!||| !|||||||||:::| heAlaGlu++ ++IleLeuLysGlySerValSerPheP 7640 : TCGCGGAGgt.........................agATATTAAAAGGGtccgtttcctttt : 7529 383 : heThrValLeuLysSer : 387 ||||||||:!!|||||| heThrValMetLysSer 7528 : tcacgGTCATGAAATCG : 7512 vulgar: AfOr106 329 387 . LHQN01028732.1 7764 7511 - 179 M 44 132 5 0 2 I 0 75 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 7512 7764 179 - . gene_id 3 ; sequence AfOr106 ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 7633 7764 . - . LHQN01028732.1 exonerate:protein2genome:local exon 7633 7764 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 7631 7632 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 7554 7632 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 7554 7555 . - . intron_id 0 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 7512 7553 . - . LHQN01028732.1 exonerate:protein2genome:local exon 7512 7553 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 7512 7764 179 - . alignment_id 3 ; Query AfOr106 ; Align 7765 330 132 ; Align 7554 374 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 173 Query range: 299 -> 375 Target range: 1695 -> 1354 300 : TyrValIleAlaGlnValValHisIlePhePheLeuThrAlaGlnGlyGlnPheValIleAs : 320 !:! !!:!!!.!|||!.! !!|||:!!|||||||||!.!!.!||||||||||||||||||:! PhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGlnGlyGlnPheValIleAs 1695 : TTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGGACAATTTGTGATAAA : 1635 321 : pSerHisGluAsn{Va} >>>> Target Intron 1 >>>> {l}TyrTrpAspMetT : 330 !:!! !!!:.!.{:!} 113 bp {!} ! !! | nAlaPheAspGlu{Le}++ --{u}ValLeuCysArgT 1634 : CGCGTTCGACGAA{CT}gt.........................ct{T}GTCCTTTGCAGAT : 1492 331 : yrGluProTyrTrpTyrAsnLeuGlnSerLysMetGlnAlaMetPheValLeuIleLeuArg : 350 ||||| !! ! |||||||||!!! !!!:!! ||||||:!!!:!|||||| !|||||| yrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeuArg 1491 : ACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTGAGA : 1432 351 : ArgAsnLeuAsnProProLeuLeuThrAlaGlyGlyLeuValGlnLeuAsnLeuAsnThrPh : 371 !!! !||||||||||||||||||||||||||||||:!!..! !|||||||||...:!!|| SerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSerPh 1431 : AGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATCGTT : 1369 372 : eAlaLysValVal : 375 ||||:!!|||:!! eAlaGluValIle 1368 : CGCAGAGGTGATT : 1355 vulgar: AfOr106 299 375 . LHQN01028732.1 1695 1354 - 173 M 25 75 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1355 1695 173 - . gene_id 4 ; sequence AfOr106 ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 1619 1695 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1619 1695 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 1617 1618 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 1506 1618 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 1506 1507 . - . intron_id 0 ; splice_site "CT" LHQN01028732.1 exonerate:protein2genome:local cds 1355 1505 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1355 1505 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1355 1695 173 - . alignment_id 4 ; Query AfOr106 ; Align 1696 300 75 ; Align 1505 326 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr106 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 156 Query range: 47 -> 179 Target range: 2787 -> 1725 48 : GlnGlySerAsnIleIleLeuPhePheSerLeuSerValAlaMetAspGlnValProPheLe : 68 ||| !:!!|||! !:!:||||||||||||:!!..! ! !:!!||| :!!|||||| GlnIleAlaAsnThrValLeuPhePheSerMetAspAsnLeuValAspGlyIleProPheAs 2787 : CAGATAGCAAACACCGTGCTATTCTTCAGCATGGACAATCTCGTGGATGGCATACCTTTCAA : 2727 69 : uValValAlaThrLeuLeuMetIleLysTyrAsnPhePheIleIleAsnGluGlnLys >> : 88 !|||!.!|||..! ! !.!.:!:||| ..! !!:!|||||||||||| ||| nValAlaAlaValGlyThrPheValLysLeuGlyAsnTyrIleIleAsnGluThrLys++ 2726 : CGTGGCAGCGGTTGGGACGTTCGTGAAACTGGGTAATTACattataaacgaaacgaaggt.. : 2665 89 : >> Target Intron 1 >>>> PheLysGluLeuPheThrSerIleLeuAsnAspTrpG : 100 666 bp ! !||| :!! ! |||! ! !! !!!.! ! +-CysLysIleMetValThrTyrAlaArgLysGlyGlnL 2664 : .......................aaTGCAAGATCATGGTGACCTATGCTCGAAAAGGACAAC : 1965 101 : lnLysLysLysThrHisGluGluGluMetIleMetGluLysTyrAlaAspLysSerValPhe : 120 !! ! ! !:!!! !! |||||| ! |||! ! ! !!.! !:!!.!! euIleAlaLeuCysTyrAlaGlyGluMetGluAsnGluIleThrGlnArgAsnTyrLeuIle 1964 : TGATCGCGTTGTGTTACGCAGGTGAGATGGAGAATGAAATTACCCAGAGAAATTACCTTATT : 1905 121 : PheIleLeuIleTyrValValAsnAlaTyrPheCysSerIleLeuPheLeuLeuLeuProPh : 141 ! ! !|||! ! !..!!.!:!! !!:!.!! !:!! !:!!||||||! !:!!||||| SerProLeuThrSerThrAlaHisLeuPheLeuProAlaAlaIlePheLeuCysValProPh 1904 : TCTCCTTTGACGTCTACAGCGCATTTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTT : 1842 142 : eThrProIleLeuLeuAspIlePheIleProLeuAsnGluSerArgProArgValGlnMetT : 162 |.!!||||||:!!|||||||||! ! |||||||||:!!!!!||| !|||||| :!:| eAlaProIleIleLeuAspIleCysAlaProLeuAsnLysThrArgLysArgValPheValT 1841 : CGCACCGATCATCTTGGACATTTGCGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTT : 1779 163 : yrProAlaTyrTyrTyrIleGluAsnGluAlaAspTyrTyrTyrProIleLeu : 179 ||||||||||||||!::!!:!!: !||| ! !!||| !|||:!! yrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMetIleMetIleIle 1778 : ATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATGATAATGATAATA : 1726 vulgar: AfOr106 47 179 . LHQN01028732.1 2787 1725 - 156 M 40 120 5 0 2 I 0 662 3 0 2 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1726 2787 156 - . gene_id 5 ; sequence AfOr106 ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 2668 2787 . - . LHQN01028732.1 exonerate:protein2genome:local exon 2668 2787 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 2666 2667 . - . intron_id 1 ; splice_site "gt" LHQN01028732.1 exonerate:protein2genome:local intron 2002 2667 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 2002 2003 . - . intron_id 0 ; splice_site "AA" LHQN01028732.1 exonerate:protein2genome:local cds 1726 2001 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1726 2001 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1726 2787 156 - . alignment_id 5 ; Query AfOr106 ; Align 2788 48 120 ; Align 2002 88 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 282 Query range: 286 -> 398 Target range: 2724 -> 1233 287 : LeuAlaPheThrGlyThrPheValLysLeuSerSerMetGluValAsnValArgPhe >>> : 306 :!!||| ..!||||||||||||||||||.!!!:! :::||| ValAlaAlaValGlyThrPheValLysLeuGlyAsnTyrIleIleAsnGluThrLys++ 2724 : GTGGCAGCGGTTGGGACGTTCGTGAAACTGGGTAATTACattataaacgaaacgaaggt... : 2665 307 : > Target Intron 1 >>>> PheThrPheCysAlaPheThrValGlyGlnLeuThrHi : 318 957 bp !!..! ! ! .!!||| !||||||||| ! !|| ++ValValHisGlyThrPhePheValGlyGlnAlaPheHi 2664 : ......................agGTTGTGCACGGAACGTTTTTCGTCGGCCAAGCGTTTCA : 1674 319 : sLeuPhePheLeuThrIleMetGlyGlnPheLeuIleAsnAlaAsnAspGluIlePheLysT : 339 |:!!|||||||||!.!:!!..!|||||||||:!!||||||||| !||||||:!:!:! ! ! sValPhePheLeuAsnValGlnGlyGlnPheValIleAsnAlaPheAspGluLeuTyrAspL 1673 : CGTTTTCTTTTTGAACGTCCAGGGACAATTTGTGATAAACGCGTTCGACGAACTGTACGACA : 1611 340 : hr{Va} >>>> Target Intron 2 >>>> {l}TyrGluAlaTyrTrpTyrAsnGly : 348 !{:!} 113 bp {!}||||||:!! ! ||||||||| ! ys{Il}++ ++{e}TyrGluSerGlnTrpTyrAsnPhe 1610 : AG{AT}gt.........................ag{A}TACGAATCGCAGTGGTATAATTTC : 1471 349 : SerSerArgThrGlnSerLeuTyrIleLeuValLeuArgLysCysLeuSerProProLysLe : 369 !!! !!|||||||||:!!||||||:!!|||!.!||||||!..||||||!:!|||||| !|| ThrProArgThrGlnAlaLeuTyrValLeuAlaLeuArgSerCysLeuAsnProProLeuLe 1470 : ACTCCTAGAACACAAGCGTTGTATGTATTGGCATTGAGAAGCTGCCTAAACCCACCTCTGTT : 1408 370 : uThrGlyGlyGlyLeuValAlaLeuAsnLeuAspSerPheLeuGln >>>> Target In : 385 ||||!.!||||||:!!..!.!!||||||||| |||||| !:!! 85 b uThrAlaGlyGlyMetThrThrLeuAsnLeuArgSerPheAlaGlu++ 1407 : AACAGCTGGTGGGATGACGACGTTGAATCTACGATCGTTCGCAGAGgt.............. : 1358 386 : tron 3 >>>> IleLeuLysAlaSerPheSerTyrTyrThrValPheArgSer : 398 p |||:!!||||||||| !!|||||||||||||||.!.!:!!!! ++IleIleLysAlaSerValSerTyrTyrThrValMetGlnThr 1357 : ...........agATCATCAAAGCATCTGTTTCCTACTACACGGTGATGCAGACC : 1234 vulgar: AfOr111 286 398 . LHQN01028732.1 2724 1233 - 282 M 19 57 5 0 2 I 0 953 3 0 2 M 34 102 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 44 132 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1234 2724 282 - . gene_id 1 ; sequence AfOr111 ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 2668 2724 . - . LHQN01028732.1 exonerate:protein2genome:local exon 2668 2724 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 2666 2667 . - . intron_id 1 ; splice_site "gt" LHQN01028732.1 exonerate:protein2genome:local intron 1711 2667 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 1711 1712 . - . intron_id 0 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 1607 1710 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1607 1710 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 1605 1606 . - . intron_id 2 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 1494 1606 . - . intron_id 2 LHQN01028732.1 exonerate:protein2genome:local splice3 1494 1495 . - . intron_id 1 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 1361 1493 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1361 1493 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 1359 1360 . - . intron_id 3 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 1276 1360 . - . intron_id 3 LHQN01028732.1 exonerate:protein2genome:local splice3 1276 1277 . - . intron_id 2 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 1234 1275 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1234 1275 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1234 2724 282 - . alignment_id 1 ; Query AfOr111 ; Align 2725 287 57 ; Align 1711 306 102 ; Align 1493 341 132 ; Align 1276 385 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 248 Query range: 132 -> 224 Target range: 5696 -> 5420 133 : ThrValTyrGluValSerIlePhePheCysGlyPheMetPheLeuLeuIleProSerIlePr : 153 ||| !! ! :!!||| !|||! !!.|||!.! !:!:|||:!!! !:!:|||! !:!: ! ThrPheGluLysValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSe 5696 : ACGTTTGAAAAAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTC : 5636 154 : oProIleLeuAsnIleIleSerProLeuAsnValSerArgGlyArgGluLeuIleTyrProS : 174 !|||||||||:!!|||:!!! !|||||||||! !!!!|||!.!||| !!!!:!!||||||: rProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProA 5635 : GCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAG : 5573 175 : erTyrTyrPheValAspGluGluLysTyrTyrTyrProIleLeuMetHisMetIleAlaVal : 194 !!||||||||||||||||||!!:|||||| !||| !|||:!! !|||||| ! !||| laTyrTyrPheValAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuVal 5572 : CTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTA : 5513 195 : AlaLeuIleLeuThrSerValTyrValAlaCysAspThrTyrLeuValTyrIleValHisHi : 215 !.!:!!!!:|||! !||||||!:! !|||||||||.!! !!! !|||||| !|||!!.|| ValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHi 5512 : GTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACA : 5450 216 : sGlyCysAlaLeuLeuAlaIleSerGly : 224 |!.!|||!.!||||||||||||:!!||| sAlaCysGlyLeuLeuAlaIleAlaGly 5449 : CGCTTGCGGATTGTTGGCCATTGCAGGG : 5421 vulgar: AfOr111 132 224 . LHQN01028732.1 5696 5420 - 248 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5696 248 - . gene_id 2 ; sequence AfOr111 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5696 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5696 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5696 248 - . alignment_id 2 ; Query AfOr111 ; Align 5697 133 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 145 Query range: 340 -> 393 Target range: 7764 -> 7605 341 : TyrGluAlaTyrTrpTyrAsnGlySerSerArgThrGlnSerLeuTyrIleLeuValLeuAr : 361 |||...||| ||||||||||||!!! !!!:!..!|||:!!||||||:!:|||!.!||||| TyrSerAlaThrTrpTyrAsnGlyThrProLysValGlnAlaLeuTyrValLeuAlaLeuAr 7764 : TACAGCGCTACATGGTACAACGGTACACCGAAAGTGCAAGCTTTATACGTGCTAGCTTTGAG : 7704 362 : gLysCysLeuSerProProLysLeuThrGlyGlyGlyLeuValAlaLeuAsnLeuAspSerP : 382 |!:! !|||!!!|||||| !:!!|||!.!|||||||||:!!:!!|||||||||!!:!!!| gArgAsnLeuThrProProLeuIleThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrP 7703 : AAGGAACTTGACTCCACCGCTGATTACTGCCGGAGGACTGATCTCCTTGAATTTGGAGACTT : 7641 383 : heLeuGlnIleLeuLysAlaSerPheSerTyrTyr : 393 || !:!!:!! ! !|||! ! !:!! ||| heAlaGluValGlyAlaAlaIleAsnAlaIleTyr 7640 : TCGCGGAGGTAGGTGCAGCAATTAACGCTATATAC : 7606 vulgar: AfOr111 340 393 . LHQN01028732.1 7764 7605 - 145 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 7606 7764 145 - . gene_id 3 ; sequence AfOr111 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 7606 7764 . - . LHQN01028732.1 exonerate:protein2genome:local exon 7606 7764 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 7606 7764 145 - . alignment_id 3 ; Query AfOr111 ; Align 7765 341 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 142 Query range: 340 -> 385 Target range: 4475 -> 4340 341 : TyrGluAlaTyrTrpTyrAsnGlySerSerArgThrGlnSerLeuTyrIleLeuValLeuAr : 361 ||||||:!! |||||||||..!|||!!!!:!||||||:!!||||||||||||!.!||||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeuAr 4475 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTACG : 4415 362 : gLysCysLeuSerProProLysLeuThrGlyGlyGlyLeuValAlaLeuAsnLeuAspSerP : 382 |!.. !!|||!:!|||||| !||||||!.!||||||!!!:!!.!!||||||||| ! !!!| gSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLysThrP 4414 : GAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAGACCT : 4352 383 : heLeuGlnIle : 385 ||! !:!!:!! heSerGluVal 4351 : TCTCAGAGGTA : 4341 vulgar: AfOr111 340 385 . LHQN01028732.1 4475 4340 - 142 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 4341 4475 142 - . gene_id 4 ; sequence AfOr111 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 4341 4475 . - . LHQN01028732.1 exonerate:protein2genome:local exon 4341 4475 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 4341 4475 142 - . alignment_id 4 ; Query AfOr111 ; Align 4476 341 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 138 -> 191 Target range: 1878 -> 1719 139 : IlePhePheCysGlyPheMetPheLeuLeuIleProSerIleProProIleLeuAsnIleIl : 159 :!:|||.!! !!.! !!!:||||||! !:!:|||! ! !||| !||||||:!!||| LeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAspIleCy 1878 : TTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTG : 1818 160 : eSerProLeuAsnValSerArgGlyArgGluLeuIleTyrProSerTyrTyrPheValAspG : 180 !:!!||||||||| !!!!||| !|||! !!!!:!!||||||:!!||||||!:::!!||| sAlaProLeuAsnLysThrArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspP 1817 : CGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATC : 1755 181 : luGluLysTyrTyrTyrProIleLeuMetHisMet : 191 |||:!!|||||| !!!::!!!!:|||!!: roGluGlnTyrTyrMetIleMetIleIleHisIle 1754 : CTGAGCAATACTACATGATAATGATAATACACATA : 1720 vulgar: AfOr111 138 191 . LHQN01028732.1 1878 1719 - 127 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1720 1878 127 - . gene_id 5 ; sequence AfOr111 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 1720 1878 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1720 1878 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1720 1878 127 - . alignment_id 5 ; Query AfOr111 ; Align 1879 139 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr111 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 5 -> 66 Target range: 6300 -> 6117 6 : LeuLeuAsnMetAspLysArgIleIleGluAspGlnTyrLeuLysIleAsnLysPhePheGl : 26 :!!|||!..|||||| !! !! :!!||| ! !::||||||!:!||||||||| .!!|| IleLeuThrMetAspAlaIleThrLeuGluLysArgTyrLeuArgIleAsnLysLysLeuGl 6300 : ATTTTGACAATGGATGCGATCACGTTAGAGAAACGTTACTTGAGAATCAACAAGAAGCTCGG : 6240 27 : yGlnLeuValGlyValTrpProTyrGlnGlnArgPheThrLysPheCysIleArgPheIleT : 47 |..!|||..!||||||||||||||||||:!!!!!! !!|||!:: !! !||| !:!!. yMetLeuThrGlyValTrpProTyrGlnLysSerSerProLysTrpIleSerArgThrValV 6239 : CATGCTAACCGGTGTGTGGCCCTATCAAAAGAGCTCGCCAAAATGGATCAGTCGAACCGTAG : 6177 48 : hrSerValIleValValLeuThrLeuAlaAlaGlnIleSerArgValIleMetPheTyr : 66 .! ! !!:!!:!!:!!! ! !! !!.!.!!|||:!!...:::::: :::..!!:! alLeuPheValIleIleProCysTyrValThrGlnValGluLysIleArgIleIlePhe 6176 : TGCTCTTTGTAATAATACCTTGTTACGTTACACAGGTAgaaaaaataaggattatCTTT : 6118 vulgar: AfOr111 5 66 . LHQN01028732.1 6300 6117 - 115 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 6118 6300 115 - . gene_id 6 ; sequence AfOr111 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 6118 6300 . - . LHQN01028732.1 exonerate:protein2genome:local exon 6118 6300 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 6118 6300 115 - . alignment_id 6 ; Query AfOr111 ; Align 6301 6 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr105 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 156 Query range: 156 -> 242 Target range: 5663 -> 5408 157 : ValIlePheLeuSerLeuProLeuCysAsnProIleLeuAspIleIleLeuProLeuAsnGl : 177 !.!:!!|||:!!!!!||||||!!! :::|||||||||||||||:!!:!!||||||||||| AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGl 5663 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGA : 5603 178 : uThrArgProArgGlnAsnIlePheAsnValAsnTyrIleIleLeuAspAsnTyrGluTyrP : 198 ||||||| !!||| ! !:!!!:! !.! !!|||.!!:!! |||.!. !!:!!||| uThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal---AspGluAspLysTyrA 5602 : GACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC---GACGAGGACAAATATC : 5543 199 : heTyrIleValTyrValHisLeuSerCysSerAlaAlaIleIleValIleIleIleIleSer : 218 !|||:!::!! ! !|||:!!! ! ! !!.!!.!!!::!!:!! !:!!.!! !:!! rgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 5542 : GTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 5483 219 : ValAspSerLeuTyrIleSerIleIleTyrHisAlaCysGlyLeuPheAlaAlaCysGlyTy : 239 !|||:!! !|||:!:! ! !:!: ! |||||||||||||||!!.||| !...|||!! CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly** 5482 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTA : 5420 240 : rGlnIleGln : 242 !:!!||| *LeuValGln 5419 : ATTAGTTCAA : 5409 vulgar: AfOr105 156 242 . LHQN01028732.1 5663 5408 - 156 M 35 105 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5409 5663 156 - . gene_id 1 ; sequence AfOr105 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5409 5663 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5409 5663 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5409 5663 156 - . alignment_id 1 ; Query AfOr105 ; Align 5664 157 105 ; Align 5559 193 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 564 Query range: 128 -> 389 Target range: 5684 -> 4224 129 : LeuHisIleGlyIleThrGluThrPheMetLeuMetTrpProMetValProProIleLeuAs : 149 :!!||||||..!:!! !! .!!.!..!.:!! ! !|||.!.||| !!||||||||||| ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAs 5684 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGA : 5624 150 : pIleIleMetProLeuAsnValSerArgLysArgIleLeuLeuTyrProAlaTyrPheTrpL : 170 ||||:!!||||||||||||! !!!!||| !|||:!:!!!:!!||||||||||||!:!!::: pIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheV 5623 : CATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCG : 5561 171 : euAspAspGluLysTyrTyrValLeuLeuLeuGlyHisMetIleIleThrIleLeuMetIle : 190 !!|||!!:!!:|||||| ! !|||:!!:!!||||||||| !:!!..!:!::!!|||:!! alAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeu 5560 : TCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTT : 5501 191 : CysPheIlePheCysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLe : 211 !! !:!!||||||||||||||| ||||||||||||||||||||||||||||||||||| IleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLe 5500 : ATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATT : 5438 212 : uLeuAlaIleAlaLysTyrArgPheLysAsnValCysLysAspLeuAsnAspLysGluAspH : 232 ||||||||||||| !!! ! !!:!!... !! ! !!!: !..! ! ! : uLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGluAsnGlyPheLeuTyrArgA 5437 : GTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAATGGTTTTCTTTATAGAA : 5375 233 : isAlaMetProLeuGluLysIleLysTyrLysSerIleCysGluSerIleLysAlaHisGln : 252 !! !:!: !!!! ! !:!! !!!!.!!!:!!! ! !..!||| !:!! ! snPheValGlyPheCysLeuAlaGluAsnAsnCysLeuLeuValAspIleValLeuAsnThr 5374 : ATTTCGTTGGCTTTTGTTTAGCTGAAAACAATTGTCTTTTGGTAGATATCGTTTTAAATACG : 5315 253 : HisAlaLeu{Ly} >>>> Target Intron 1 >>>> {s}TyrLeuArgLeuIleGl : 262 !.!|||:!!{!:} 194 bp {!}|||:!!!:! !||| ArgAlaMet{Ar}++ ++{g}TyrValLysGluIleTh 5314 : CGTGCTATG{AG}gt.........................ag{A}TACGTGAAAGAGATCAC : 5091 263 : uAsnSerTyrHisThrTyrLeuPheValSerMetGlyLeuLeuIleMetAlaIleSerValS : 283 ! !:!!:!! !!|||! !:!!|||:!!|||:!!|||||||||!!:|||::!||||||..!| rAlaAlaHisAspThrCysMetPheIleSerValGlyLeuLeuMetMetSerIleSerThrS 5090 : GGCCGCTCACGATACTTGCATGTTCATCTCGGTGGGACTGCTGATGATGAGCATCAGCACTT : 5028 284 : erLeuLeuGlu >>>> Target Intron 2 >>>> ValAlaAsnGlyLysAsnGlyS : 294 ||||||||:!! 92 bp :!!:!!.!. !:!!:!!! !: erLeuLeuGln++ ++IleSerGluHisGluHisAspA 5027 : CGTTGTTGCAGgt.........................agATATCAGAACACGAACACGACG : 4903 295 : erArgLysLeuValGlnAlaThrPheLeuPheAlaGlnLeuPheHisThrPheIleLeuThr : 314 !!..! ! !:!! ! ..!||||||!!! |||||||||!!.|||! !.!..!!|||..! laGluTrpThrLeuTyrCysThrPhePheThrAlaGlnLeuLeuHisMetLeuPheLeuVal 4902 : CAGAATGGACATTGTACTGCACGTTCTTCACGGCCCAGTTGTTACACATGCTGTTCTTAGTC : 4843 315 : ValGlnGlyGlnPheValIleAsnGluLeuGlnAspValTyrGluSer{Il} >>>> Tar : 331 ||||||||||||||||||:!::!!! !! !.!.|||||||||.!.!!!{||} ValGlnGlyGlnPheValLeuAspAlaTyrAspAspValTyrAsnThr{Il}++ 4842 : GTTCAGGGGCAGTTCGTGTTGGACGCGTACGACGATGTTTATAATACG{AT}gt........ : 4788 332 : get Intron 3 >>>> {e}TyrGluSerProTrpTyrThrPheSerProArgIleArgS : 345 314 bp {|}||||||||| !!||||||!.!! !||| !!:!! !:!: ++{e}TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnA 4787 : .................ag{A}TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAG : 4436 346 : erLeuTyrValLeuSerLeuArgSerCysLeuAsnPheProIleLeuThrAlaGlyGlyLeu : 365 !!||||||:!!|||:!!||||||||| !!|||||| !|||:!:|||||||||||||||!!! laLeuTyrIleLeuAlaLeuArgSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPhe 4435 : CGTTATACATATTAGCGTTACGGAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTT : 4376 366 : IleValLeuAsnLeuGlnSerPheAlaGlu >>>> Target Intron 4 >>>> Ile : 376 |||..!|||||||||:!!!!!|||:!!||| 77 bp ||| IleThrLeuAsnLeuLysThrPheSerGlu++ ++Ile 4375 : ATAACGTTGAATTTAAAGACCTTCTCAGAGgt.........................agATT : 4266 377 : IleLysAlaAlaValSerTyrTyrThrValMetGlnThr : 389 ||||||:!!:!!||||||||||||||||||||||||:!! IleLysSerSerValSerTyrTyrThrValMetGlnSer 4265 : ATAAAATCATCCGTGTCTTACTATACGGTGATGCAATCG : 4225 vulgar: AfOr112_1 128 389 . LHQN01028732.1 5684 4224 - 564 M 127 381 S 0 2 5 0 2 I 0 190 3 0 2 S 1 1 M 30 90 5 0 2 I 0 88 3 0 2 M 44 132 S 0 2 5 0 2 I 0 310 3 0 2 S 1 1 M 44 132 5 0 2 I 0 73 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 4225 5684 564 - . gene_id 1 ; sequence AfOr112_1 ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 5302 5684 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5302 5684 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 5300 5301 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 5108 5301 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 5108 5109 . - . intron_id 0 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 5017 5107 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5017 5107 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 5015 5016 . - . intron_id 2 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 4925 5016 . - . intron_id 2 LHQN01028732.1 exonerate:protein2genome:local splice3 4925 4926 . - . intron_id 1 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 4791 4924 . - . LHQN01028732.1 exonerate:protein2genome:local exon 4791 4924 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 4789 4790 . - . intron_id 3 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 4477 4790 . - . intron_id 3 LHQN01028732.1 exonerate:protein2genome:local splice3 4477 4478 . - . intron_id 2 ; splice_site "aG" LHQN01028732.1 exonerate:protein2genome:local cds 4344 4476 . - . LHQN01028732.1 exonerate:protein2genome:local exon 4344 4476 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 4342 4343 . - . intron_id 4 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 4267 4343 . - . intron_id 4 LHQN01028732.1 exonerate:protein2genome:local splice3 4267 4268 . - . intron_id 3 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 4225 4266 . - . LHQN01028732.1 exonerate:protein2genome:local exon 4225 4266 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 4225 5684 564 - . alignment_id 1 ; Query AfOr112_1 ; Align 5685 129 381 ; Align 5107 257 90 ; Align 4925 287 132 ; Align 4476 332 132 ; Align 4267 376 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 177 Query range: 331 -> 377 Target range: 1492 -> 1354 332 : TyrGluSerProTrpTyrThrPheSerProArgIleArgSerLeuTyrValLeuSerLeuAr : 352 |||||||||! !||||||!.!|||!!!||||||! !!:!:!!||||||||||||:!!||||| TyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeuAr 1492 : TACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTGAG : 1432 353 : gSerCysLeuAsnPheProIleLeuThrAlaGlyGlyLeuIleValLeuAsnLeuGlnSerP : 373 ||||||||||||| |||:!:|||||||||||||||:!!! ..!|||||||||!:!|||| gSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSerP 1431 : AAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATCGT : 1369 374 : heAlaGluIleIle : 377 ||||||||:!:||| heAlaGluValIle 1368 : TCGCAGAGGTGATT : 1355 vulgar: AfOr112_1 331 377 . LHQN01028732.1 1492 1354 - 177 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1355 1492 177 - . gene_id 2 ; sequence AfOr112_1 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 1355 1492 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1355 1492 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1355 1492 177 - . alignment_id 2 ; Query AfOr112_1 ; Align 1493 332 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 149 Query range: 129 -> 188 Target range: 1881 -> 1704 130 : HisIleGlyIleThrGluThrPheMetLeuMetTrpProMetValProProIleLeuAspIl : 150 |||:!: !:!! !!! !.!!.!..!.||| !|||.!.!.!||| !||||||||||| HisLeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAspIl 1881 : CATTTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACAT : 1821 151 : eIleMetProLeuAsnValSerArgLysArgIleLeuLeuTyrProAlaTyrPheTrpLeuA : 171 | ! !||||||||| !!!!|||||||||:!:!!!:!!||||||||||||!:!|||:!!| eCysAlaProLeuAsnLysThrArgLysArgValPheValTyrProAlaTyrTyrTrpMetA 1820 : TTGCGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGG : 1758 172 : spAspGluLysTyrTyrValLeuLeuLeuGlyHisMetIleIleThrIleLeu : 188 || !|||:!!||||||:!!:!!:!!:!! !|||!!:! :!:! !:!!:!! spProGluGlnTyrTyrMetIleMetIleIleHisIleLysLeuLysValVal 1757 : ATCCTGAGCAATACTACATGATAATGATAATACACATAAAGTTGAAGGTTGTG : 1705 vulgar: AfOr112_1 129 188 . LHQN01028732.1 1881 1704 - 149 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1705 1881 149 - . gene_id 3 ; sequence AfOr112_1 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 1705 1881 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1705 1881 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1705 1881 149 - . alignment_id 3 ; Query AfOr112_1 ; Align 1882 130 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 138 Query range: 320 -> 384 Target range: 7797 -> 7605 321 : IleAsnGluLeuGlnAspValTyrGluSerIleTyrGluSerProTrpTyrThrPheSerPr : 341 :!!.!..!.:!!||| ! :!! !! !!! !|||...:!! !!||||||!.! !!!!|| LeuGlnAsnValGlnLysLeuLeuValArgArgTyrSerAlaThrTrpTyrAsnGlyThrPr 7797 : CTTCAAAACGTTCAGAAGTTGCTCGTTCGCAGATACAGCGCTACATGGTACAACGGTACACC : 7737 342 : oArgIleArgSerLeuTyrValLeuSerLeuArgSerCysLeuAsnPheProIleLeuThrA : 362 |!:!:!:!:!:!!||||||||||||:!!||||||!!! !|||!.! |||:!::!!|||| oLysValGlnAlaLeuTyrValLeuAlaLeuArgArgAsnLeuThrProProLeuIleThrA 7736 : GAAAGTGCAAGCTTTATACGTGCTAGCTTTGAGAAGGAACTTGACTCCACCGCTGATTACTG : 7674 363 : laGlyGlyLeuIleValLeuAsnLeuGlnSerPheAlaGluIleIleLysAlaAlaValSer : 382 |||||||||||||| !|||||||||:!!!!!|||||||||:!! ! !||| ! !:!! laGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGluValGlyAlaAlaIleAsnAla 7673 : CCGGAGGACTGATCTCCTTGAATTTGGAGACTTTCGCGGAGGTAGGTGCAGCAATTAACGCT : 7614 383 : TyrTyr : 384 ||| IleTyr 7613 : ATATAC : 7606 vulgar: AfOr112_1 320 384 . LHQN01028732.1 7797 7605 - 138 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 7606 7797 138 - . gene_id 4 ; sequence AfOr112_1 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 7606 7797 . - . LHQN01028732.1 exonerate:protein2genome:local exon 7606 7797 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 7606 7797 138 - . alignment_id 4 ; Query AfOr112_1 ; Align 7798 321 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 0 -> 50 Target range: 6291 -> 6141 1 : MetAspAlaArgThrValGluLysAsnPheLeuLysValAsnLysIlePheGlyLeuIleTh : 21 |||||||||! !|||:!!||||||..!!:!|||!:!:!!||||||! .!!|||:!!:!!|| MetAspAlaIleThrLeuGluLysArgTyrLeuArgIleAsnLysLysLeuGlyMetLeuTh 6291 : ATGGATGCGATCACGTTAGAGAAACGTTACTTGAGAATCAACAAGAAGCTCGGCATGCTAAC : 6231 22 : rGlyValTrpProTyrGlnAsnTyrArgMetLysMetAlaGluArgPheLeuSerValThrV : 42 |||||||||||||||||||!!. ! ! ||| ! !...||| !:!! !:!! !| rGlyValTrpProTyrGlnLysSerSerProLysTrpIleSerArgThrValValLeuPheV 6230 : CGGTGTGTGGCCCTATCAAAAGAGCTCGCCAAAATGGATCAGTCGAACCGTAGTGCTCTTTG : 6168 43 : alMetMetSerGlyPheValThrGln : 50 ||!!:!!: !! !!!:!||||||||| alIleIleProCysTyrValThrGln 6167 : TAATAATACCTTGTTACGTTACACAG : 6142 vulgar: AfOr112_1 0 50 . LHQN01028732.1 6291 6141 - 121 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 6142 6291 121 - . gene_id 5 ; sequence AfOr112_1 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 6142 6291 . - . LHQN01028732.1 exonerate:protein2genome:local exon 6142 6291 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 6142 6291 121 - . alignment_id 5 ; Query AfOr112_1 ; Align 6292 1 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 215 -> 288 Target range: 8343 -> 8036 216 : LysTyrArgPheLysAsnValCysLysAspLeuAsnAspLysGluAspHisAlaMetProLe : 236 !:!:!!||||||||| !.! ! !! !!!...!!!.! ! ! ||||||.!. !:! ArgHisArgPheLysTrpAlaIleAlaAlaGluLysSerAsnAlaLysHisAlaPheValMe 8343 : AGACATCGCTTCAAGTGGGCAATTGCAGCAGAGAAGAGTAACGCGAAACATGCCTTCGTGAT : 8283 237 : uGluLysIleLysTyrLysSerIleCysGluSerIleLysAlaHisGlnHisAlaLeu{Ly} : 256 !|||:!! !||| !!!!:!!|||.!.|||:!!||||||||||||||||||:!!{!!} tGluGlu---AlaTyrAlaArgValCysHisSerValLysAlaHisGlnHisAlaIle{As} 8282 : GGAAGAA---GCGTATGCAAGGGTATGCCACTCGGTTAAGGCACACCAGCACGCCATA{AA} : 8226 257 : >>>> Target Intron 1 >>>> {s}TyrLeuArgLeuIleGluAsnSerTyrHis : 266 91 bp {.}|||:!!! ! !||||||.!. !:!! ! ++ ++{n}TyrIleThrGluIleGluGlnValHisGly 8225 : gt.........................ag{T}TATATTACAGAAATTGAACAAGTTCATGGC : 8105 267 : ThrTyrLeuPheValSerMetGlyLeuLeuIleMetAlaIleSerValSerLeuLeuGluVa : 287 ||||||||||||:!!:!!:!!|||:!!:!!!!:|||:!!.!!|||:!!!!!|||:!!..!|| ThrTyrLeuPheIleAlaValGlyMetValMetMetSerPheSerIleThrLeuValArgVa 8104 : ACGTACCTCTTCATAGCAGTGGGAATGGTTATGATGTCATTCAGTATCACGTTAGTCAGGGT : 8042 288 : lAla : 288 |::! lSer 8041 : TAGT : 8037 vulgar: AfOr112_1 215 288 . LHQN01028732.1 8343 8036 - 115 M 23 69 G 1 0 M 16 48 S 0 2 5 0 2 I 0 87 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 8037 8343 115 - . gene_id 6 ; sequence AfOr112_1 ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 8225 8343 . - . LHQN01028732.1 exonerate:protein2genome:local exon 8225 8343 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local splice5 8223 8224 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 8134 8224 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 8134 8135 . - . intron_id 0 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 8037 8133 . - . LHQN01028732.1 exonerate:protein2genome:local exon 8037 8133 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 8037 8343 115 - . alignment_id 6 ; Query AfOr112_1 ; Align 8344 216 69 ; Align 8275 240 48 ; Align 8133 257 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr112_1 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 295 -> 331 Target range: 1713 -> 1605 296 : LysLeuValGlnAlaThrPheLeuPheAlaGlnLeuPheHisThrPheIleLeuThrValGl : 316 |||:!!|||!!.!.!||||||!!! !!!.!||| !||||||..!|||.!!|||!.!||||| LysValValHisGlyThrPhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGl 1713 : AAGGTTGTGCACGGAACGTTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCA : 1653 317 : nGlyGlnPheValIleAsnGluLeuGlnAspValTyrGluSerIle : 331 |||||||||||||||||||! !!!!.!.!!::!!|||!!:!.!!!: nGlyGlnPheValIleAsnAlaPheAspGluLeuTyrAspLysMet 1652 : GGGACAATTTGTGATAAACGCGTTCGACGAACTGTACGACAAGATG : 1606 vulgar: AfOr112_1 295 331 . LHQN01028732.1 1713 1605 - 100 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1606 1713 100 - . gene_id 7 ; sequence AfOr112_1 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 1606 1713 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1606 1713 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1606 1713 100 - . alignment_id 7 ; Query AfOr112_1 ; Align 1714 296 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr149 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 985 Query range: 0 -> 371 Target range: 1053857 -> 1051862 1 : MetLeuLysGlnValThrPheGluLysValIleHisIleIleTrpPheSerValAl : 19 ||||||||||||:!!||| |||||||||||| !!|||||||||||||||||||| MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : aLeuThrPheCysTrpProLeuProAlaAsnSerThrLysAsnGlnValPheValP : 38 ||||.!! !!|||||||||||| !!::!::!:!!!:!||| !|||||| ...| aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 39 : heArgIleLeuGlnIleIleSerIleIleAsnAlaPheMetLeuIleLeuProLeu : 56 ||:::|||||||||||| ||| |||!:!|||.!!!!:|||:!!||||||||| heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 57 : LeuTyrSerIleTyrLeuHisPheAsnAspIleAlaIleValPheGlnSerLeuSe : 75 |||||||||! !||||||||||||:!!|||:!! !:!!:!!! !||||||:!!!! LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 76 : rIleLeuValGlyLeuSerGlnMetIleIleGlnThrValIleLeuCysPheValL : 94 !:!:! !:!!|||:!!! !|||||||||!!:|||||||||||| ||||||..!! sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIle---CysPheThrA 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATA---TGTTTCACCA : 1053581 95 : ysTyrAsnSerLeuGln >>>> Target Intron 1 >>>> ArgValIleG : 103 !.|||:!! !|||||| 613 bp |||:!!||| snTyrAspLeuLeuGln++ ++ArgIleIleT 1053580 : ACTACGACCTTCTGCAGgt.........................agCGAATAATTA : 1052941 104 : luGluMetIleThrCysValLysGluAlaGlnGlnTyrGluArgLysIlePheCys : 121 !||||||||||||! !||||||||||||||||||!:!||||||:!!|||.!! ! hrGluMetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLeuHis 1052940 : CAGAAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCAC : 1052887 122 : LysTyrIleAspLysCysAsnIlePheTyrGlySerSerLeuIlePheThrTyrMe : 140 !!.||||||.!.||||||!!.:!!|||||||||.!!|||||||||!::||||||:! AsnTyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrTyrLe 1052886 : AACTATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACATACCT : 1052830 141 : tValValIleValTyrIleMetGlyProIleValLeuProAlaProPheProIleA : 159 : !!.!! ! !!:!:!!:!:||||||:!!||||||||| !|||||||||! !. uCysAlaThrCysPheValLeuGlyProValValLeuProAsnProPheProSerS 1052829 : CTGTGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGCA : 1052773 160 : spThrGluTyrProPheHisValAsnTyrThrIleThrArgIleIleIleTyrLeu : 177 .!.!!||||||||||||!.!|||||| !||| !! !!.! !|||:!!|||||| erAlaGluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyrLeu 1052772 : GTGCAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTACCTG : 1052719 178 : GlnGlnSerLeuLeuIleValGlnCysAlaGlyHisValCysLeuSerValPheGl : 196 !!.||||||!!!:!!! ! !!|||! !::!!.!|||:!!|||:!!|||:!!||||| HisGlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePheGl 1052718 : CACCAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTTCGG : 1052662 197 : yAlaLeuLeuLeuTrpPheThrAlaAlaArgPheGluCysLeuIleValGluLeuG : 215 ||||||||||||||||.!!|||||||||||||||.!.||||||! !:!!|||:!!| yAlaLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluValG 1052661 : AGCTCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTTC : 1052605 216 : lnLysIleThrAsnIleGlyMetLeuIleIleCysIleGluLysGlnLeuArgLeu : 233 ||:!!! !:!!!:!||| !|||||||||||||||:!!:!!|||||||||! !||| lnGlnSerSerSerIleHisMetLeuIleIleCysValLysLysGlnLeuLeuLeu 1052604 : AACAAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCTACTACTG : 1052551 234 : ArgArgTyrAlaArgAsnValValAsnSerPheArgPheMetIle-----ValTyr : 250 ||||||! !...::: ... !|||!!::!!#####:!!!:! ArgArg******GluAspPheAlaIleTyrAspTyrPheIleVal#####LeuPhe 1052550 : AGGAGGTGATAAGaagattttgcaatttatgatTACTTTATCGTAACTGATTGTTT : 1052495 251 : AlaIleGlyValSerThrPheAlaLeuThrLeuTyrGlyIleIleMetIleValLy : 269 |||||| ! !!!!! ! ! ! !..!:!! !!|||.!! :!:|||||| AlaIleIlePheArgTyrAlaLysGluValValAspGlyPheArgLeuIleValLe 1052494 : GCCATAATTTTTAGGTACGCCAAAGAAGTGGTTGACGGTTTTCGGCTTATAGTACT : 1052438 270 : sAlaProLeuIleMetLysIleGluAlaIleThrLeuSerPheValLeuLeuLeuG : 288 ! !!:!! !|||!..||| !|||:!!||||||||| !:!! !|||:!!. uAsnAlaIleAlaMetSerIleLeuAlaLeuThrLeuSerSerIleThrLeuIleM 1052437 : CAACGCTATAGCAATGAGCATTTTGGCTCTTACTCTAAGTAGTATTACATTAATAA : 1052381 289 : ln >>>> Target Intron 2 >>>> IleTyrIleTyrAlaTrpProAlaA : 297 .! 122 bp ||||||!!:||||||||| !!|||| et++ +-IleTyrMetTyrAlaTrpSerAlaA 1052380 : TGgt.........................aaATTTATATGTACGCATGGTCAGCTG : 1052232 298 : spTyrMetLysAspMet >>>> Target Intron 3 >>>> SerIleAsnV : 306 ||||||||||||||||| 80 bp ||| !!!.| spTyrMetLysAspMet++ ++SerAlaLysV 1052231 : ACTACATGAAAGACATGgt.........................agAGTGCAAAGG : 1052125 307 : alSerLysSerValTyrAsnIleIleTrpTyrLysGlnThrLeuArgMetGlnLys : 324 |||||:!!|||||||||:!!:!!! |||||| !|||||||||...||||||||| alSerGlnSerValTyrAspLeuThrTrpTyrGlyGlnThrLeuGluMetGlnLys 1052124 : TTTCACAAAGTGTGTATGATTTAACGTGGTACGGACAAACATtggaaatgcagaaa : 1052071 325 : AsnLeuLeuAsnValLeuValTyrGlnGlnProIleIlePheSerIleSerCysIl : 343 |||:::||| :::||||||:!!|||:!!|||:!!|||.!.|||:!!|||||||| AsnValLeuTyrIleLeuValHisGlnGluProValIleLeuSerValSerCysIl 1052070 : aatgtattatacatattgGTACACCAAGAACCGGTAATTCTGTCAGTTAGTTGCAT : 1052014 344 : eLeuProGluLeuSerLeuArgTyrPheCysSer >>>> Target Intron 4 : 355 |:!!|||||||||||||||||||||!:!|||||| 65 bp eValProGluLeuSerLeuArgTyrTyrCysSer++ 1052013 : CGTGCCGGAGCTTTCTCTTCGTTATTATTGCTCGgt.................... : 1051976 356 : >>>> TyrValSerAsnIlePheSerIlePheThrAlaValArgValIleIleG : 371 |||:!!|||||| ||||||:!!|||||||||:!!||||||:!::!:! ++TyrLeuSerAsnAlaPheSerValPheThrAlaLeuArgValValLeuA 1051975 : .....agTACCTGTCAAATGCGTTCTCGGTTTTCACCGCTTTGCGCGTCGTGCTGG : 1051865 372 : lu : 371 !: sp 1051864 : AT : 1051863 vulgar: AfOr149 0 371 . KQ414618.1 1053857 1051862 - 985 M 89 267 G 1 0 M 9 27 5 0 2 I 0 609 3 0 2 M 149 447 F 0 5 M 40 120 5 0 2 I 0 118 3 0 2 M 14 42 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 61 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1051863 1053857 985 - . gene_id 1 ; sequence AfOr149 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1053564 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053564 1053857 . - . insertions 0 ; deletions 1 KQ414618.1 exonerate:protein2genome:local splice5 1053562 1053563 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052951 1053563 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052951 1052952 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052379 1052950 . - . KQ414618.1 exonerate:protein2genome:local exon 1052379 1052950 . - . insertions 0 ; deletions 0 ; frameshifts 5 KQ414618.1 exonerate:protein2genome:local splice5 1052377 1052378 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052257 1052378 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1052257 1052258 . - . intron_id 1 ; splice_site "AA" KQ414618.1 exonerate:protein2genome:local cds 1052215 1052256 . - . KQ414618.1 exonerate:protein2genome:local exon 1052215 1052256 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052213 1052214 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052135 1052214 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1052135 1052136 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051979 1052134 . - . KQ414618.1 exonerate:protein2genome:local exon 1051979 1052134 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1051977 1051978 . - . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1051914 1051978 . - . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 1051914 1051915 . - . intron_id 3 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051863 1051913 . - . KQ414618.1 exonerate:protein2genome:local exon 1051863 1051913 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1051863 1053857 985 - . alignment_id 1 ; Query AfOr149 ; Align 1053858 1 267 ; Align 1053591 91 27 ; Align 1052951 100 447 ; Align 1052499 249 120 ; Align 1052257 289 42 ; Align 1052135 303 156 ; Align 1051914 355 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr149 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 295 Query range: 95 -> 235 Target range: 1038352 -> 1037932 96 : AsnSerLeuGlnArgValIleGluGluMetIleThrCysValLysGluAlaGlnGl : 114 :!!!!!||||||!:!:!!||||||||||||! ! !||| !:!! !|||:!!! AspThrLeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysPr 1038352 : GACACGTTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACC : 1038298 115 : nTyrGluArgLysIlePheCysLysTyrIleAspLysCysAsnIlePheTyrGlyS : 133 !||||||||| ! :!!||| ::!|||:!!:!!||| ::::::|||||| : oTyrGluArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleT 1038297 : ATACGAAAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataa : 1038241 134 : erSerLeuIlePheThrTyrMetValValIleValTyrIleMetGlyProIleVal : 151 :: !!! ! !!:: !|||:!:..!!.!|||:!! :!!:!:||| !:!::!! hrCysSerSerTrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeu 1038240 : catGTTCGTCATGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTT : 1038187 152 : LeuProAlaProPheProIleAspThrGluTyrProPheHisValAsnTyrThrIl : 170 :!! !!! !|||||||||! !:!!.!!! !|||||||||! !||||||!:! ! IleSerAspProPheProThrAsnAlaValTyrProPheProValAsnPheGluPr 1038186 : ATATCCGATCCTTTTCCAACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACC : 1038130 171 : eThrArgIleIleIleTyrLeuGlnGlnSerLeuLeuIleValGlnCysAlaGlyH : 189 ! !|||! !||||||!:!:!!!!.||||||!!!:!! !:!!|||||||||!.!| oLeuArgSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaH 1038129 : CTTGAGAAGCATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCAC : 1038073 190 : isValCysLeuSerValPheGlyAlaLeuLeuLeuTrpPheThrAlaAlaArgPhe : 207 ||!.! !!:!!!:!|||.!!..!|||||||||||| ||||||.!!||||||||| isAlaSerMetAsnValLeuSerAlaLeuLeuLeuLeuPheThrThrAlaArgPhe 1038072 : ACGCTAGTATGAATGTGCTTTCTGCACTGTTATTGCTATTCACTACAGCtcgtttc : 1038019 208 : GluCysLeuIleValGluLeuGlnLysIleThrAsnIleGlyMetLeuIleIleCy : 226 ||| |||:!:..!||||||::!!!.:!!!.!:!!|||! !! ||||||! ! GluIleLeuMetThrGluLeuArgAsnValAsnAspIleGluThrLeuIleLysSe 1038018 : gaaatattgaTGACGGAGTTGAGGAATGTCAATGATATCGAAACACTGATTAAGAG : 1037962 227 : sIleGluLysGlnLeuArgLeuArgArg : 235 !!!::!!||| ! ! !! !:!!|||||| rMetLysLysTyrSerThrValArgArg 1037961 : TATGAAAAAGTATTCGACTGTGCGGAGG : 1037933 vulgar: AfOr149 95 235 . KQ414618.1 1038352 1037932 - 295 M 140 420 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037933 1038352 295 - . gene_id 2 ; sequence AfOr149 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1037933 1038352 . - . KQ414618.1 exonerate:protein2genome:local exon 1037933 1038352 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037933 1038352 295 - . alignment_id 2 ; Query AfOr149 ; Align 1038353 96 420 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr149 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 177 Query range: 0 -> 99 Target range: 1039184 -> 1038890 1 : MetLeuLysGlnValThrPheGluLysValIleHisIleIleTrpPheSerValAl : 19 ||||||||| ! !!:! |||!:!!.!||| !:!!:!! !!! !..!|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1039184 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1039130 20 : aLeuThrPheCysTrpProLeuProAlaAsnSerThrLysAsnGlnValPheValP : 38 |!!!|||! !|||||||||||||||:!!!..:!!||||||::!! !|||.!! !| aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1039129 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1039073 39 : heArgIleLeuGlnIleIleSerIleIleAsnAlaPheMetLeuIleLeuProLeu : 56 ||!:!||||||::! !.!! !:!!:!!||||||!!.:!!|||.!!||||||||| heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1039072 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1039019 57 : LeuTyrSerIleTyrLeuHisPheAsnAspIleAlaIleValPheGlnSerLeuSe : 75 ||||||:!!:!::!!:!!||| |||||| !! !! !||| :!!:!! !!! LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1039018 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1038962 76 : rIleLeuValGlyLeuSerGlnMetIleIleGlnThrValIleLeuCysPheValL : 94 !:!: !:!!!.!||| |||:::......|||||| ::: |||.!!! !: sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheVal---CysIleGlyG 1038961 : CCTGACGCTTGCTctcgtgcaaatatttttccaaactttcgtt---TGCATCGGTC : 1038908 95 : ysTyrAsnSerLeuGln : 99 !!|||:!! !!!!||| lnTyrAspHisPheGln 1038907 : AATACGATCATTTTCAG : 1038891 vulgar: AfOr149 0 99 . KQ414618.1 1039184 1038890 - 177 M 89 267 G 1 0 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1038891 1039184 177 - . gene_id 3 ; sequence AfOr149 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1038891 1039184 . - . KQ414618.1 exonerate:protein2genome:local exon 1038891 1039184 . - . insertions 0 ; deletions 1 KQ414618.1 exonerate:protein2genome:local similarity 1038891 1039184 177 - . alignment_id 3 ; Query AfOr149 ; Align 1039185 1 267 ; Align 1038918 91 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr149 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 177 Query range: 0 -> 99 Target range: 1030017 -> 1029723 1 : MetLeuLysGlnValThrPheGluLysValIleHisIleIleTrpPheSerValAl : 19 ||||||||| ! !!:! |||!:!!.!||| !:!!:!! !!! !..!|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1030017 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1029963 20 : aLeuThrPheCysTrpProLeuProAlaAsnSerThrLysAsnGlnValPheValP : 38 |!!!|||! !|||||||||||||||:!!!..:!!||||||::!! !|||.!! !| aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1029962 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1029906 39 : heArgIleLeuGlnIleIleSerIleIleAsnAlaPheMetLeuIleLeuProLeu : 56 ||!:!||||||::! !.!! !:!!:!!||||||!!.:!!|||.!!||||||||| heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1029905 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1029852 57 : LeuTyrSerIleTyrLeuHisPheAsnAspIleAlaIleValPheGlnSerLeuSe : 75 ||||||:!!:!::!!:!!||| |||||| !! !! !||| :!!:!! !!! LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1029851 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1029795 76 : rIleLeuValGlyLeuSerGlnMetIleIleGlnThrValIleLeuCysPheValL : 94 !:!: !:!!!.!||| |||:::......|||||| !!:!! |||.!!! !: sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheVal---CysIleGlyG 1029794 : CCTGACGCTTGCCctcgtgcaaatatttttccagacTTTCGTT---TGCATCGGCC : 1029741 95 : ysTyrAsnSerLeuGln : 99 !!|||:!! !!!!||| lnTyrAspHisPheGln 1029740 : AATACGATCATTTTCAG : 1029724 vulgar: AfOr149 0 99 . KQ414618.1 1030017 1029723 - 177 M 89 267 G 1 0 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1029724 1030017 177 - . gene_id 4 ; sequence AfOr149 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1029724 1030017 . - . KQ414618.1 exonerate:protein2genome:local exon 1029724 1030017 . - . insertions 0 ; deletions 1 KQ414618.1 exonerate:protein2genome:local similarity 1029724 1030017 177 - . alignment_id 4 ; Query AfOr149 ; Align 1030018 1 267 ; Align 1029751 91 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr149 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 0 -> 92 Target range: 1058517 -> 1058241 1 : MetLeuLysGlnValThrPheGluLysValIleHisIleIleTrpPheSerValAl : 19 ||| !|||...:!!||| |||:!!!.!||| .!!! .!.|||||||| MetArgLysSerIleThrProGluGlnAlaIleSerPheThrLysLeuSerValAl 1058517 : ATGAGGAAAAGTATAACGCCGGAACAAGCGATCTCGTTCACGAAACTGAGCGTCGC : 1058463 20 : aLeuThrPheCysTrpProLeuProAlaAsnSerThrLysAsnGlnValPheValP : 38 |:!!|||! !! ||||||! ! !! !! :!!|||!:!!.!||||||!!.:!!| aValThrCysSerTrpProProSerProLeuAlaThrArgThrGlnValLeuLeuP 1058462 : TGTAACTTGTTCGTGGCCACCGTCACCTCTGGCGACCAGAACTCAAGTTTTGCTCT : 1058406 39 : heArgIleLeuGlnIleIleSerIleIleAsnAlaPheMetLeuIleLeuProLeu : 56 ||!.!! ||| !! !! !:!!.!!:!!!:!.!!.!! !|||:!!||||||||| heAsnThrLeuTrpSerThrAlaPheValSerThrIleAlaLeuLeuLeuProLeu 1058405 : TTAATACGTTGTGGAGCACAGCATTCGTTAGCACCATCGCGCTGCTTTTGCCGCTA : 1058352 57 : LeuTyrSerIleTyrLeuHisPheAsnAspIleAlaIleValPheGlnSerLeuSe : 75 ||| !.!!|||||| !:!! !!!.||| ! !|||:!! :!!!!!:!!|| LeuSerGlyIleTyrGluTyrArgLysAspProIleIleLeuGlyLysThrValSe 1058351 : TTGAGCGGAATTTACGAGTACCGTAAAGACCCCATCATTCTTGGGAAAACAGTCAG : 1058295 76 : rIleLeuValGlyLeuSerGlnMetIleIleGlnThrValIleLeuCysPhe : 92 |:!! ! !!.!:!!:!!|||:!! !|||:!!! !:!!!!:! ! !!||| rLeuAlaSerAlaValAlaGlnValAlaIleLysMetIleMetCysArgPhe 1058294 : CCTCGCCTCGGCTGTCGCCCAGGTGGCAATCAAAATGATAATGTGCCGTTTC : 1058242 vulgar: AfOr149 0 92 . KQ414618.1 1058517 1058241 - 125 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1058242 1058517 125 - . gene_id 5 ; sequence AfOr149 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1058242 1058517 . - . KQ414618.1 exonerate:protein2genome:local exon 1058242 1058517 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1058242 1058517 125 - . alignment_id 5 ; Query AfOr149 ; Align 1058518 1 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr151_2PN Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 933 Query range: 0 -> 371 Target range: 1053857 -> 1051862 1 : MetLeuLysGlnLeuThrProGluLysUnkLeuSerThrLeu<->LeuGluLeuAl : 18 ||||||||||||||||||||||||||| :!!..!! !:!! !!!...:!!|| MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 19 : aSerThrLeuCysTrpProLeuSerAlaAsnSerSerLysThrGlnValPheIleP : 37 | !.!!:!!|||||||||||||||::!::!:!!||||||.!!|||||| | aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 38 : heLysAlaLeuGlnIleIleSerIleIleAsnAlaPheIleLeuLeuLeuProLeu : 55 ||||| ||||||||| ||| |||!:!|||.!!|||||||||||||||||| heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 56 : LeuTyrSerValTyrLeuHisPheAspAspValIleIleValSerLysCysValAl : 74 |||||||||..!||||||||||||||||||||||||:!!:!!|||:!! !!:!!.. LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 75 : aLeuSerIleGlyLeuThrGlnLeuIleThrGlnThrAlaIleCysIleAlaLysT : 93 !||||||!!:|||:!! !|||:!!|||! !||||||!.!||||||.!!.!!!!.| sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCysPheThrAsnT 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGTTTCACCAACT : 1053578 94 : yrAspSerLeuGln >>>> Target Intron 1 >>>> HisValIleGluG : 102 ||||| !|||||| 613 bp !..:!!||| !| yrAspLeuLeuGln++ ++ArgIleIleThrG 1053577 : ACGACCTTCTGCAGgt.........................agCGAATAATTACAG : 1052938 103 : luMetIleIleCysIleLysAlaAlaGlnGlnTyrGluArgLysIlePheHisLys : 120 ||||||||! ! !:!!|||! !|||||||||!:!||||||:!!|||.!!|||!!. luMetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLeuHisAsn 1052937 : AAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCACAAC : 1052884 121 : TyrIleGluLysCysTyrThrPheTyrAlaCysSerIleThrCysThrTyrLeuTh : 139 ||||||:!!|||||| ! !||||||!.! !!|||:!!! !!! ||||||||| TyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrTyrLeuCy 1052883 : TATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACATACCTCTG : 1052827 140 : rThrThrValPheIleIleGlyProAlaPheSerProSerSerPheProIleAspA : 158 !.!!||| !|||:!!:!!||||||!.! !! !|||!:! !!||||||! !..!| sAlaThrCysPheValLeuGlyProValValLeuProAsnProPheProSerSerA 1052826 : TGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGCAGTG : 1052770 159 : laGluTyrProPheGlnIleAsnTyrThrProValLysThrIleIleTyrLeuGln : 176 ||||||||||||||!:::!!||| !||||||:!!!!..!!|||:!!||||||!!. laGluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyrLeuHis 1052769 : CAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTACCTGCAC : 1052716 177 : GlnThrLeuValSerPheGlnCysAlaGlyHisIleCysIleSerIlePheGlyAl : 195 |||:!!!!!:!!|||||||||! !::!!.!|||||||||:!!|||||||||||||| GlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePheGlyAl 1052715 : CAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTTCGGAGC : 1052659 196 : aLeuLeuLeuTrpPheThrAlaAlaArgPheGluCysLeuAlaValGluLeuGlnA : 214 |||||||||||||.!!|||||||||||||||.!.||||||.!!:!!|||:!!|||! aLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluValGlnG 1052658 : TCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTTCAAC : 1052602 215 : rgIleThrAsnIleGlyMetLeuUnkAlaCysValLysLysGlnLeuArgIleArg : 232 :!! !:!!!:!||| !|||||| !||||||||||||||||||! !:!:||| lnSerSerSerIleHisMetLeuIleIleCysValLysLysGlnLeuLeuLeuArg 1052601 : AAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCTACTACTGAGG : 1052548 233 : LysTyrThrGlnLysLysValIleIleSerPheArgPheIleIle--ValTyrAla : 250 !:!! !::: ...||| ...!:! !.!!:!!! !##:!!!:!||| Arg******GluAspPheAlaIleTyrAspTyrPheIleValThr##LeuPheAla 1052547 : AGGTGATAAGaagattttgcaatttatgatTACTTTATCGTAACTGATTGTTTGCC : 1052492 251 : IleGlyValSerThrPheValLeuIleLeuAspAspIleIleIleIleMetLysAl : 269 ||| ! !!!!! ! ! ! !:!::!!|||! !.!! :!!|||:!: IleIlePheArgTyrAlaLysGluValValAspGlyPheArgLeuIleValLeuAs 1052491 : ATAATTTTTAGGTACGCCAAAGAAGTGGTTGACGGTTTTCGGCTTATAGTACTCAA : 1052435 270 : aSerLeuIleValLysIleGlnPheIleThrLeu<->SerLeuThrValLeuThrG : 287 !:!!:!! !:!!!..||| ! !:!!|||||| |||:!!|||:!!:!!! !! nAlaIleAlaMetSerIleLeuAlaLeuThrLeuSerSerIleThrLeuIleMetV 1052434 : CGCTATAGCAATGAGCATTTTGGCTCTTACTCTAAGTAGTATTACATTAATAATGG : 1052378 288 : lu{U} >>>> Target Intron 2 >>>> {nk}IleTyrIleTyrAlaTrp : 294 !{ } 116 bp { }||||||!!:||||||||| al{L}++ ++{ys}IleTyrMetTyrAlaTrp 1052377 : TG{a}gt.........................ag{AA}ATTTATATGTACGCATGG : 1052241 295 : ProAlaAspTyrMetLysAspMet >>>> Target Intron 3 >>>> Val : 303 !!||||||||||||||||||||| 80 bp ! SerAlaAspTyrMetLysAspMet++ ++Ser 1052240 : TCAGCTGACTACATGAAAGACATGgt.........................agAGT : 1052134 304 : ThrAsnValSerLysSerValTyrAsnIleThrTrpTyrLysGlnAlaLeuSerMe : 322 .!!!!.||||||:!!|||||||||:!!:!!||||||||| !|||.!!|||...|| AlaLysValSerGlnSerValTyrAspLeuThrTrpTyrGlyGlnThrLeuGluMe 1052133 : GCAAAGGTTTCACAAAGTGTGTATGATTTAACGTGGTACGGACAAACATtggaaat : 1052077 323 : tGlnLysAsnLeuLeuAsnValLeuMetTyrGlnGlnProIleIleLeuSerValA : 341 ||||||||||:::||| :::|||:!::!!|||:!!|||:!!||||||||||||! tGlnLysAsnValLeuTyrIleLeuValHisGlnGluProValIleLeuSerValS 1052076 : gcagaaaaatgtattatacatattgGTACACCAAGAACCGGTAATTCTGTCAGTTA : 1052020 342 : snCysIleLeuSerGluLeuSerLeuHisTyrTyrCysSer >>>> Target I : 355 :!||||||:!! !!||||||||||||!.!|||||||||||| 65 erCysIleValProGluLeuSerLeuArgTyrTyrCysSer++ 1052019 : GTTGCATCGTGCCGGAGCTTTCTCTTCGTTATTATTGCTCGgt............. : 1051976 356 : ntron 4 >>>> TyrProSerAsnAlaPheSerIlePheThrAlaIleArgVal : 368 bp |||! !|||||||||||||||:!!|||||||||:!:|||||| ++TyrLeuSerAsnAlaPheSerValPheThrAlaLeuArgVal 1051975 : ............agTACCTGTCAAATGCGTTCTCGGTTTTCACCGCTTTGCGCGTC : 1051874 369 : MetIleGlu : 371 :!!:!:!!: ValLeuAsp 1051873 : GTGCTGGAT : 1051863 vulgar: AfOr151_2PN 0 371 . KQ414618.1 1053857 1051862 - 933 M 14 42 G 0 3 M 83 249 5 0 2 I 0 609 3 0 2 M 150 450 F 0 2 M 33 99 G 0 3 M 7 21 S 0 1 5 0 2 I 0 112 3 0 2 S 1 2 M 14 42 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 61 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1051863 1053857 933 - . gene_id 1 ; sequence AfOr151_2PN ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1053564 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053564 1053857 . - . insertions 3 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1053562 1053563 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052951 1053563 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052951 1052952 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052375 1052950 . - . KQ414618.1 exonerate:protein2genome:local exon 1052375 1052950 . - . insertions 3 ; deletions 0 ; frameshifts 2 KQ414618.1 exonerate:protein2genome:local splice5 1052373 1052374 . - . intron_id 2 ; splice_site "gt" KQ414618.1 exonerate:protein2genome:local intron 1052259 1052374 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1052259 1052260 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052215 1052258 . - . KQ414618.1 exonerate:protein2genome:local exon 1052215 1052258 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052213 1052214 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052135 1052214 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1052135 1052136 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051979 1052134 . - . KQ414618.1 exonerate:protein2genome:local exon 1051979 1052134 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1051977 1051978 . - . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1051914 1051978 . - . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 1051914 1051915 . - . intron_id 3 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051863 1051913 . - . KQ414618.1 exonerate:protein2genome:local exon 1051863 1051913 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1051863 1053857 933 - . alignment_id 1 ; Query AfOr151_2PN ; Align 1053858 1 42 ; Align 1053813 15 249 ; Align 1052951 98 450 ; Align 1052499 248 99 ; Align 1052397 281 21 ; Align 1052257 289 42 ; Align 1052135 303 156 ; Align 1051914 355 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr151_2PN Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 436 Query range: 0 -> 233 Target range: 1039184 -> 1037932 1 : MetLeuLysGlnLeuThrProGluLysUnkLeuSerThrLeuLeuGluLeu<->Al : 18 ||||||||| ! ! !!:!||||||!:!...:!!||| !:!!! !! :!! || MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1039184 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1039130 19 : aSerThrLeuCysTrpProLeuSerAlaAsnSerSerLysThrGlnValPheIleP : 37 |! !|||! !|||||||||||| !!:!!!..:!!!!!|||:!!! !|||.!! !| aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1039129 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1039073 38 : heLysAlaLeuGlnIleIleSerIleIleAsnAlaPheIleLeuLeuLeuProLeu : 55 ||||| !|||::! !.!! !:!!:!!||||||!!.:!:|||!!!||||||||| heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1039072 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1039019 56 : LeuTyrSerValTyrLeuHisPheAspAspValIleIleValSerLysCysValAl : 74 ||||||:!!:!!:!!:!!||| :!!|||!.! ! !|||:!!|||..!!.!.. LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1039018 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1038962 75 : aLeuSerIleGlyLeuThrGlnLeuIleThrGlnThrAlaIleCysIleAlaLysT : 93 !|||!!!:!!!.!|||...|||:::... |||||| :::||||||!.!:!!| sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1038961 : CCTGACGCTTGCTctcgtgcaaatatttttccaaactttcgttTGCATCGGTCAAT : 1038905 94 : yr{A} >>>> Target Intron 1 >>>> {sp}SerLeuGlnHisValIle : 100 ||{|} 550 bp {||}!!!|||||| ! :!!||| yr{A}-+ -+{sp}ThrLeuGlnLysLeuIle 1038904 : AC{G}at.........................tg{AC}ACGTTGCAGAAACTAATC : 1038334 101 : GluGluMetIleIleCysIleLysAlaAlaGlnGlnTyrGluArgLysIlePheHi : 119 |||||||||! |||||| !:!!.!!|||:!!! !||||||||| ! :!!|||!! GluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheGl 1038333 : GAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGACGTCTTCCA : 1038277 120 : sLysTyrIleGluLysCysTyrThrPheTyrAlaCysSerIleThrCysThrTyrL : 138 .::!|||:!!.!.||| |||||| !! :!!!! !|||| nArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheTyrL 1038276 : ACGATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTTACT : 1038220 139 : euThrThrThrValPheIleIleGlyProAlaPheSerProSerSerPheProIle : 156 |||||.!!! !:!!.!.:!!:!!||| ! !.!!! ! !!..! !!||||||! ! euThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPheProThr 1038219 : TAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACC : 1038166 157 : AspAlaGluTyrProPheGlnIleAsnTyrThrProValLysThrIleIleTyrLe : 175 :!!|||! !|||||||||! :!!|||!:! !|||:!!!:!!:!||||||!:!:! AsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMe 1038165 : AACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTAT : 1038109 176 : uGlnGlnThrLeuValSerPheGlnCysAlaGlyHisIleCysIleSerIlePheG : 194 !!!.|||:!!!!!|||.!!.!.|||||||||!.!||| ! !!!!:!:!:!:.!!. tHisGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuS 1038108 : GCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTT : 1038052 195 : lyAlaLeuLeuLeuTrpPheThrAlaAlaArgPheGluCysLeuAlaValGluLeu : 212 .!|||||||||||| ||||||.!!|||||||||||| ||| !..!|||||| erAlaLeuLeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeu 1038051 : CTGCACTGTTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTG : 1037998 213 : GlnArgIleThrAsnIleGlyMetLeuUnkAlaCysValLysLysGlnLeuArgIl : 231 ::!!.!:!!!.!:!!|||! !! ||| ! !!:!!|||||| ! ! !! !:! ArgAsnValAsnAspIleGluThrLeuIleLysSerMetLysLysTyrSerThrVa 1037997 : AGGAATGTCAATGATATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGT : 1037941 232 : eArgLys : 233 :|||!:! lArgArg 1037940 : GCGGAGG : 1037933 vulgar: AfOr151_2PN 0 233 . KQ414618.1 1039184 1037932 - 436 M 17 51 G 0 3 M 76 228 S 0 1 5 0 2 I 0 546 3 0 2 S 1 2 M 139 417 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037933 1039184 436 - . gene_id 2 ; sequence AfOr151_2PN ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1038902 1039184 . - . KQ414618.1 exonerate:protein2genome:local exon 1038902 1039184 . - . insertions 3 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1038900 1038901 . - . intron_id 1 ; splice_site "AT" KQ414618.1 exonerate:protein2genome:local intron 1038352 1038901 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1038352 1038353 . - . intron_id 0 ; splice_site "TG" KQ414618.1 exonerate:protein2genome:local cds 1037933 1038351 . - . KQ414618.1 exonerate:protein2genome:local exon 1037933 1038351 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037933 1039184 436 - . alignment_id 2 ; Query AfOr151_2PN ; Align 1039185 1 51 ; Align 1039131 18 228 ; Align 1038350 95 417 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr151_2PN Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 192 Query range: 0 -> 97 Target range: 1030017 -> 1029723 1 : MetLeuLysGlnLeuThrProGluLysUnkLeuSerThrLeuLeuGluLeu<->Al : 18 ||||||||| ! ! !!:!||||||!:!...:!!||| !:!!! !! :!! || MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1030017 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1029963 19 : aSerThrLeuCysTrpProLeuSerAlaAsnSerSerLysThrGlnValPheIleP : 37 |! !|||! !|||||||||||| !!:!!!..:!!!!!|||:!!! !|||.!! !| aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1029962 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1029906 38 : heLysAlaLeuGlnIleIleSerIleIleAsnAlaPheIleLeuLeuLeuProLeu : 55 ||||| !|||::! !.!! !:!!:!!||||||!!.:!:|||!!!||||||||| heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1029905 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1029852 56 : LeuTyrSerValTyrLeuHisPheAspAspValIleIleValSerLysCysValAl : 74 ||||||:!!:!!:!!:!!||| :!!|||!.! ! !|||:!!|||..!!.!.. LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1029851 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1029795 75 : aLeuSerIleGlyLeuThrGlnLeuIleThrGlnThrAlaIleCysIleAlaLysT : 93 !|||!!!:!!!.!|||...|||:::... |||||| !:!!||||||!.!:!!| sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1029794 : CCTGACGCTTGCCctcgtgcaaatatttttccagacTTTCGTTTGCATCGGCCAAT : 1029738 94 : yrAspSerLeuGln : 97 ||||| !!!!||| yrAspHisPheGln 1029737 : ACGATCATTTTCAG : 1029724 vulgar: AfOr151_2PN 0 97 . KQ414618.1 1030017 1029723 - 192 M 17 51 G 0 3 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1029724 1030017 192 - . gene_id 3 ; sequence AfOr151_2PN ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1029724 1030017 . - . KQ414618.1 exonerate:protein2genome:local exon 1029724 1030017 . - . insertions 3 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1029724 1030017 192 - . alignment_id 3 ; Query AfOr151_2PN ; Align 1030018 1 51 ; Align 1029964 18 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr151_2PN Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 142 Query range: 0 -> 89 Target range: 1058517 -> 1058247 1 : MetLeuLysGlnLeuThrProGluLysUnkLeuSer<->ThrLeuLeuGluLeuAl : 18 ||| !|||...:!!|||||||||:!!...:!!||| ||| !|||...:!!|| MetArgLysSerIleThrProGluGlnAlaIleSerPheThrLysLeuSerValAl 1058517 : ATGAGGAAAAGTATAACGCCGGAACAAGCGATCTCGTTCACGAAACTGAGCGTCGC : 1058463 19 : aSerThrLeuCysTrpProLeuSerAlaAsnSerSerLysThrGlnValPheIleP : 37 | !|||! !! ||||||! !||| !! :!!!!!!:!|||||||||!!.:!!| aValThrCysSerTrpProProSerProLeuAlaThrArgThrGlnValLeuLeuP 1058462 : TGTAACTTGTTCGTGGCCACCGTCACCTCTGGCGACCAGAACTCAAGTTTTGCTCT : 1058406 38 : heLysAlaLeuGlnIleIleSerIleIleAsnAlaPheIleLeuLeuLeuProLeu : 55 ||!!..!!||| !! !! !:!!.!!:!!!:!.!!.!! ||||||||||||||| heAsnThrLeuTrpSerThrAlaPheValSerThrIleAlaLeuLeuLeuProLeu 1058405 : TTAATACGTTGTGGAGCACAGCATTCGTTAGCACCATCGCGCTGCTTTTGCCGCTA : 1058352 56 : LeuTyrSerValTyrLeuHisPheAspAspValIleIleValSerLysCysValAl : 74 ||| !.!!:!!||| !:!! ! ! ||| !||||||:!!.!!||| |||:: LeuSerGlyIleTyrGluTyrArgLysAspProIleIleLeuGlyLysThrValSe 1058351 : TTGAGCGGAATTTACGAGTACCGTAAAGACCCCATCATTCTTGGGAAAACAGTCAG : 1058295 75 : aLeuSerIleGlyLeuThrGlnLeuIleThrGlnThrAlaIleCys : 89 !|||:!! !.!:!!.!!|||:!! !! !:!!! ! !!!:||| rLeuAlaSerAlaValAlaGlnValAlaIleLysMetIleMetCys 1058294 : CCTCGCCTCGGCTGTCGCCCAGGTGGCAATCAAAATGATAATGTGC : 1058248 vulgar: AfOr151_2PN 0 89 . KQ414618.1 1058517 1058247 - 142 M 12 36 G 0 3 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1058248 1058517 142 - . gene_id 4 ; sequence AfOr151_2PN ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1058248 1058517 . - . KQ414618.1 exonerate:protein2genome:local exon 1058248 1058517 . - . insertions 3 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1058248 1058517 142 - . alignment_id 4 ; Query AfOr151_2PN ; Align 1058518 1 36 ; Align 1058479 13 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr150 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1010 Query range: 0 -> 370 Target range: 1053857 -> 1051862 1 : MetLeuLysGlnLeuThrProGluLysAlaIleHisIleThrTrpLeuSerValAl : 19 |||||||||||||||||||||||||||!.!||| !!|||! !|||!!!|||||||| MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : aIleThrPheCysTrpProLeuProAlaAsnSerSerLysIleGlnValPheMetP : 38 |:!:.!! !!|||||||||||| !!::!::!:!!|||||| !|||||| | aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 39 : heLysAlaLeuGlnIleIleSerIleIleAsnAlaPheValLeuLeuLeuProLeu : 56 ||||| ||||||||| ||| |||!:!|||.!!:!!||||||||||||||| heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 57 : LeuTyrSerIleTyrLeuHisPheAspAspIleValValValPheLysSerIleAl : 75 |||||||||! !||||||||||||||||||:!!:!!|||:!!! !:!!||||||.. LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 76 : aLeuCysValGlyLeuSerGlnMetIleIleGlnThrAlaIleCysPheValLysT : 94 !|||! :!!|||:!!! !|||||||||!!:||||||!.!|||||||||..!!!.| sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCysPheThrAsnT 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGTTTCACCAACT : 1053578 95 : yrAspSerLeuGln >>>> Target Intron 1 >>>> ArgValIleGluG : 103 ||||| !|||||| 613 bp |||:!!||| !| yrAspLeuLeuGln++ ++ArgIleIleThrG 1053577 : ACGACCTTCTGCAGgt.........................agCGAATAATTACAG : 1052938 104 : luMetIleThrTyrValLysGluAlaGlnGlnTyrGluArgLysIlePheHisLys : 121 ||||||||||||||||||||||||||||||||!:!||||||:!!|||.!!|||!!. luMetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLeuHisAsn 1052937 : AAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCACAAC : 1052884 122 : TyrIleGluLysCysHisIlePheTyrGlyCysSerIleIleCysMetTyrLeuTh : 140 ||||||:!!|||||| ! :!!||||||||| !!|||:!!|||!! ! |||||| TyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrTyrLeuCy 1052883 : TATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACATACCTCTG : 1052827 141 : rGlyValAlaPheIleIleGlyProAlaPheSerProAlaSerPheProAlaAspA : 159 !!.!..!..!|||:!!:!!||||||!.! !! !||| ! !!||||||::!..!| sAlaThrCysPheValLeuGlyProValValLeuProAsnProPheProSerSerA 1052826 : TGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGCAGTG : 1052770 160 : laGluTyrProPheGlnIleAsnTyrLysProValLysValIleIleTyrLeuGln : 177 ||||||||||||||!:::!!||| !! !|||:!!!!.!.!|||:!!||||||!!. laGluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyrLeuHis 1052769 : CAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTACCTGCAC : 1052716 178 : GlnThrLeuValGlyPheGlnCysThrAlaHisIleCysLeuSerValPheGlyAl : 196 |||:!!!!!:!!.!!||||||! !!:!||||||||||||:!!|||:!!|||||||| GlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePheGlyAl 1052715 : CAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTTCGGAGC : 1052659 197 : aLeuLeuLeuTrpPheThrAlaAlaArgPheGluCysLeuAlaValGluLeuLysL : 215 |||||||||||||.!!|||||||||||||||.!.||||||.!!:!!|||:!!:!!: aLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluValGlnG 1052658 : TCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTTCAAC : 1052602 216 : ysIleThrAsnIleGlyMetLeuIleValCysValLysLysGlnLeuHisValArg : 233 !!! !:!!!:!||| !|||||||||:!!||||||||||||||||||! :!!||| lnSerSerSerIleHisMetLeuIleIleCysValLysLysGlnLeuLeuLeuArg 1052601 : AAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCTACTACTGAGG : 1052548 234 : ArgTyrAlaLysArgValValIleSerPheArgPheIleIle-----LeuCysAla : 250 |||! !::: ...||| !||||||:!!#####|||! !||| Arg******GluAspPheAlaIleTyrAspTyrPheIleVal#####LeuPheAla 1052547 : AGGTGATAAGaagattttgcaatttatgatTACTTTATCGTAACTGATTGTTTGCC : 1052492 251 : IleGlyValSerThrPheAlaLeuThrLeuGlyGlyValIleMetIleLysLysAl : 269 ||| ! !!!!! ! ! ! !..!:!!! !||| !! :!:||| ! IleIlePheArgTyrAlaLysGluValValAspGlyPheArgLeuIleValLeuAs 1052491 : ATAATTTTTAGGTACGCCAAAGAAGTGGTTGACGGTTTTCGGCTTATAGTACTCAA : 1052435 270 : aProPheIleValLysValGlnPheIleThrLeuIleLeuThrLeuLeuThrGlu : 288 ! !!.!. !:!!!..:!! ! !:!!||||||! ! !! ! !|||! ! ! nAlaIleAlaMetSerIleLeuAlaLeuThrLeuSerSerIleThrLeuIleMet+ 1052434 : CGCTATAGCAATGAGCATTTTGGCTCTTACTCTAAGTAGTATTACATTAATAATGg : 1052378 289 : >>>> Target Intron 2 >>>> IleTyrMetTyrThrTrpProAlaAspH : 297 122 bp ||||||||||||.!!||| !!||||||: + +-IleTyrMetTyrAlaTrpSerAlaAspT 1052377 : t.........................aaATTTATATGTACGCATGGTCAGCTGACT : 1052229 298 : isMetLysAspMet >>>> Target Intron 3 >>>> SerMetAsnValS : 306 !!|||||||||||| 80 bp ||| !!.|||| yrMetLysAspMet++ ++SerAlaLysValS 1052228 : ACATGAAAGACATGgt.........................agAGTGCAAAGGTTT : 1052122 307 : erGlnSerValTyrAsnIleThrTrpTyrLysGlnThrLeuArgMetGlnLysAsp : 324 ||||||||||||||:!!:!!||||||||| !|||||||||...|||||||||::: erGlnSerValTyrAspLeuThrTrpTyrGlyGlnThrLeuGluMetGlnLysAsn 1052121 : CACAAAGTGTGTATGATTTAACGTGGTACGGACAAACATtggaaatgcagaaaaat : 1052068 325 : LeuLeuAsnValLeuMetTyrGlnGlnProIleIleLeuSerIleAsnCysIleLe : 343 :::||| :::|||:!::!!|||:!!|||:!!|||||||||:!!!:!||||||:! ValLeuTyrIleLeuValHisGlnGluProValIleLeuSerValSerCysIleVa 1052067 : gtattatacatattgGTACACCAAGAACCGGTAATTCTGTCAGTTAGTTGCATCGT : 1052011 344 : uProGluLeuThrLeuHisTyrTyrCysSer >>>> Target Intron 4 >> : 354 !|||||||||:!!|||!.!|||||||||||| 65 bp lProGluLeuSerLeuArgTyrTyrCysSer++ 1052010 : GCCGGAGCTTTCTCTTCGTTATTATTGCTCGgt....................... : 1051976 355 : >> TyrLeuSerAsnAlaPheSerIlePheThrAlaIleArgValIleIleGlu : 370 |||||||||||||||||||||:!!|||||||||:!:||||||:!::!:!!: ++TyrLeuSerAsnAlaPheSerValPheThrAlaLeuArgValValLeuAsp 1051975 : ..agTACCTGTCAAATGCGTTCTCGGTTTTCACCGCTTTGCGCGTCGTGCTGGAT : 1051863 vulgar: AfOr150 0 370 . KQ414618.1 1053857 1051862 - 1010 M 98 294 5 0 2 I 0 609 3 0 2 M 149 447 F 0 5 M 40 120 5 0 2 I 0 118 3 0 2 M 14 42 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 61 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1051863 1053857 1010 - . gene_id 1 ; sequence AfOr150 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1053564 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053564 1053857 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1053562 1053563 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052951 1053563 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052951 1052952 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052379 1052950 . - . KQ414618.1 exonerate:protein2genome:local exon 1052379 1052950 . - . insertions 0 ; deletions 0 ; frameshifts 5 KQ414618.1 exonerate:protein2genome:local splice5 1052377 1052378 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052257 1052378 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1052257 1052258 . - . intron_id 1 ; splice_site "AA" KQ414618.1 exonerate:protein2genome:local cds 1052215 1052256 . - . KQ414618.1 exonerate:protein2genome:local exon 1052215 1052256 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052213 1052214 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052135 1052214 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1052135 1052136 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051979 1052134 . - . KQ414618.1 exonerate:protein2genome:local exon 1051979 1052134 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1051977 1051978 . - . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1051914 1051978 . - . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 1051914 1051915 . - . intron_id 3 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051863 1051913 . - . KQ414618.1 exonerate:protein2genome:local exon 1051863 1051913 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1051863 1053857 1010 - . alignment_id 1 ; Query AfOr150 ; Align 1053858 1 294 ; Align 1052951 99 447 ; Align 1052499 248 120 ; Align 1052257 288 42 ; Align 1052135 302 156 ; Align 1051914 354 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr150 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 453 Query range: 0 -> 234 Target range: 1039184 -> 1037932 1 : MetLeuLysGlnLeuThrProGluLysAlaIleHisIleThrTrpLeuSerValAl : 19 ||||||||| ! ! !!:!||||||!:!|||||| !:!!..! :!!! !..!|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1039184 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1039130 20 : aIleThrPheCysTrpProLeuProAlaAsnSerSerLysIleGlnValPheMetP : 38 |.!!|||! !|||||||||||||||:!!!..:!!!!!||| !! !|||.!!...| aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1039129 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1039073 39 : heLysAlaLeuGlnIleIleSerIleIleAsnAlaPheValLeuLeuLeuProLeu : 56 ||||| !|||::! !.!! !:!!:!!||||||!!.||||||!!!||||||||| heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1039072 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1039019 57 : LeuTyrSerIleTyrLeuHisPheAspAspIleValValValPheLysSerIleAl : 75 ||||||:!!:!::!!:!!||| :!!||| !! ! !||| |||:!! !.. LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1039018 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1038962 76 : aLeuCysValGlyLeuSerGlnMetIleIleGlnThrAlaIleCysPheValLysT : 94 !||| :!!!.!||| |||:::......|||||| :::|||.!!! !:!!| sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1038961 : CCTGACGCTTGCTctcgtgcaaatatttttccaaactttcgttTGCATCGGTCAAT : 1038905 95 : yr{A} >>>> Target Intron 1 >>>> {sp}SerLeuGlnArgValIle : 101 ||{|} 550 bp {||}!!!||||||!:!:!!||| yr{A}-+ -+{sp}ThrLeuGlnLysLeuIle 1038904 : AC{G}at.........................tg{AC}ACGTTGCAGAAACTAATC : 1038334 102 : GluGluMetIleThrTyrValLysGluAlaGlnGlnTyrGluArgLysIlePheHi : 120 |||||||||! ! !! ! !:!! !|||:!!! !||||||||| ! :!!|||!! GluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheGl 1038333 : GAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGACGTCTTCCA : 1038277 121 : sLysTyrIleGluLysCysHisIlePheTyrGlyCysSerIleIleCysMetTyrL : 139 .::!|||:!!.!.||| :::|||||| !! !!! .!.|||| nArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheTyrL 1038276 : ACGATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTTACT : 1038220 140 : euThrGlyValAlaPheIleIleGlyProAlaPheSerProAlaSerPheProAla : 157 |||||!.!:!! !.!.:!!:!!||| ! !.!!! ! !!! ! !!||||||.!! euThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPheProThr 1038219 : TAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACC : 1038166 158 : AspAlaGluTyrProPheGlnIleAsnTyrLysProValLysValIleIleTyrLe : 176 :!!|||! !|||||||||! :!!|||!:!:!!|||:!!!:! !||||||!:!:! AsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMe 1038165 : AACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTAT : 1038109 177 : uGlnGlnThrLeuValGlyPheGlnCysThrAlaHisIleCysLeuSerValPheG : 195 !!!.|||:!!!!!||||||.!.||||||.!!|||||| ! !!:!!!:!|||.!!. tHisGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuS 1038108 : GCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTT : 1038052 196 : lyAlaLeuLeuLeuTrpPheThrAlaAlaArgPheGluCysLeuAlaValGluLeu : 213 .!|||||||||||| ||||||.!!|||||||||||| ||| !..!|||||| erAlaLeuLeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeu 1038051 : CTGCACTGTTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTG : 1037998 214 : LysLysIleThrAsnIleGlyMetLeuIleValCysValLysLysGlnLeuHisVa : 232 !:!!!.:!!!.!:!!|||! !! |||||| ! !!:!!|||||| ! ! ! !|| ArgAsnValAsnAspIleGluThrLeuIleLysSerMetLysLysTyrSerThrVa 1037997 : AGGAATGTCAATGATATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGT : 1037941 233 : lArgArg : 234 ||||||| lArgArg 1037940 : GCGGAGG : 1037933 vulgar: AfOr150 0 234 . KQ414618.1 1039184 1037932 - 453 M 94 282 S 0 1 5 0 2 I 0 546 3 0 2 S 1 2 M 139 417 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037933 1039184 453 - . gene_id 2 ; sequence AfOr150 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1038902 1039184 . - . KQ414618.1 exonerate:protein2genome:local exon 1038902 1039184 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1038900 1038901 . - . intron_id 1 ; splice_site "AT" KQ414618.1 exonerate:protein2genome:local intron 1038352 1038901 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1038352 1038353 . - . intron_id 0 ; splice_site "TG" KQ414618.1 exonerate:protein2genome:local cds 1037933 1038351 . - . KQ414618.1 exonerate:protein2genome:local exon 1037933 1038351 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037933 1039184 453 - . alignment_id 2 ; Query AfOr150 ; Align 1039185 1 282 ; Align 1038350 96 417 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr150 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 375 Query range: 0 -> 234 Target range: 1058517 -> 1057732 1 : MetLeuLysGlnLeuThrProGluLysAlaIleHisIleThrTrpLeuSerValAl : 19 ||| !|||...:!!|||||||||:!!|||||| .!!||| ||||||||||| MetArgLysSerIleThrProGluGlnAlaIleSerPheThrLysLeuSerValAl 1058517 : ATGAGGAAAAGTATAACGCCGGAACAAGCGATCTCGTTCACGAAACTGAGCGTCGC : 1058463 20 : aIleThrPheCysTrpProLeuProAlaAsnSerSerLysIleGlnValPheMetP : 38 |:!!|||! !! ||||||! ! !! !! :!!!!!!:!! !||||||!!.:!:| aValThrCysSerTrpProProSerProLeuAlaThrArgThrGlnValLeuLeuP 1058462 : TGTAACTTGTTCGTGGCCACCGTCACCTCTGGCGACCAGAACTCAAGTTTTGCTCT : 1058406 39 : heLysAlaLeuGlnIleIleSerIleIleAsnAlaPheValLeuLeuLeuProLeu : 56 ||!!..!!||| !! !! !:!!.!!:!!!:!.!!.!!!.!||||||||||||||| heAsnThrLeuTrpSerThrAlaPheValSerThrIleAlaLeuLeuLeuProLeu 1058405 : TTAATACGTTGTGGAGCACAGCATTCGTTAGCACCATCGCGCTGCTTTTGCCGCTA : 1058352 57 : LeuTyrSerIleTyrLeuHisPheAspAspIleValValValPheLysSerIleAl : 75 ||| !.!!|||||| !:!! ! ! ||| !:!!:!!:!! |||!!!:!!:: LeuSerGlyIleTyrGluTyrArgLysAspProIleIleLeuGlyLysThrValSe 1058351 : TTGAGCGGAATTTACGAGTACCGTAAAGACCCCATCATTCTTGGGAAAACAGTCAG : 1058295 76 : aLeuCysValGlyLeuSerGlnMetIleIleGlnThrAlaIleCysPheValLysT : 94 !|||..! !!.!:!!:!!|||:!! !|||:!!! ! !!!:||| ! !!:!! rLeuAlaSerAlaValAlaGlnValAlaIleLysMetIleMetCysArgPheGlnG 1058294 : CCTCGCCTCGGCTGTCGCCCAGGTGGCAATCAAAATGATAATGTGCCGTTTCCAGC : 1058238 95 : yrAspSerLeuGln >>>> Target Intron 1 >>>> ArgValIleGluG : 103 ! ! ..!!!!||| 83 bp !:!! ! ! lnLysGlnPheGln++ ++ValLeuTyrPheA 1058237 : AGAAGCAATTCCAGgt.........................agGTATTGTACTTCG : 1058128 104 : luMetIleThrTyrValLysGluAlaGlnGlnTyrGluArgLysIlePheHisLys : 121 !:||| !.!!:! !!:! ! ||| ... |||::: :::.!.!!.::! spMetGluAsnPheCysArgTyrAlaThrSerLysGluLysValValLeuGlnArg 1058127 : ACATGGAGAATTTCTGCAGATACGCCACCtcgaaggaaaaagttgtcCTGCAACGA : 1058074 122 : TyrIleGluLysCysHisIlePheTyrGlyCysSerIleIleCysMetTyrLeuTh : 140 |||:!:!!:!:!! ! ! !|||:!!||| !! !|||:!!!! !:!||||| TyrValAspArgTyrLysTyrPheHisGlyIleTyrIleLeuTrpCysPheLeuTh 1058073 : TACGTGGACAGATACAAATACTTTCATGGGATTTATATATTATGGTGCTTCCTCAC : 1058017 141 : rGlyValAlaPheIleIleGlyProAlaPheSerProAlaSerPheProAlaAspA : 159 | !:!! ! !!|||! !|||||| !!:!|||||| !!!!||||||.!! !!| rThrIlePheValIleSerGlyProLeuTyrSerProGlnThrPheProThrHisA 1058016 : GACCATCTTCGTCATAAGTGGTCCATTGTACTCACCACAGACGTTCCCCACTCATG : 1057960 160 : laGluTyrProPheGlnIleAsnTyrLysProValLysValIleIleTyrLeuGln : 177 || !||||||||||||:!:.!.:!!! !! ! !!|||::::::||||||...... laIleTyrProPheGlnValGluHisThrLeuPheLysIleValIleTyrPheHis 1057959 : CGATATATCCTTTCCAAGTGGAACATACACTGTTCAagattgttatttatttccat : 1057906 178 : GlnThrLeuValGlyPheGlnCysThrAlaHisIleCysLeuSerValPheGlyAl : 196 |||:!!|||||||||||||||...:!!||| !!!:..!:!!..!..! !|| GlnSerLeuValGlyPheGlnAlaSerAlaGlyMetAlaIleAspThrGlnIleAl 1057905 : CAGTCGTTAGTTGGTTTTCAGGCGTCCGCTGGTATGGCCATCGACACTCAAATTGC : 1057849 197 : aLeuLeuLeuTrpPheThrAlaAlaArgPheGluCysLeuAlaValGluLeuLysL : 215 |||||||||| ! !:!.!!||||||||||||||| |||!.! !|||:!!::!! aLeuLeuLeuArgTyrAlaAlaAlaArgPheGluLeuLeuGlyAsnGluMetArgA 1057848 : TCTTCTTCTGCGATACGCGGCTGCCAGGTTCGAGCTATTGGGAAACGAGATGCGAA : 1057792 216 : ysIleThrAsnIleGlyMetLeuIleValCysValLysLysGlnLeuHisValArg : 233 !. !!.!!.! ! !! !!!! !!.!|||:!!:!!|||!!. !.!.:!!! ! snAlaAsnThrHisCysGluPheAsnAlaCysIleGluLysHisSerGluLeuLeu 1057791 : ATGCAAATACTCACTGTGAATTCAATGCCTGCATAGAGAAGCACAGTGAACTTCTC : 1057738 234 : Arg : 234 ||| Arg 1057737 : AGg : 1057733 vulgar: AfOr150 0 234 . KQ414618.1 1058517 1057732 - 375 M 98 294 5 0 2 I 0 79 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057733 1058517 375 - . gene_id 3 ; sequence AfOr150 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1058224 1058517 . - . KQ414618.1 exonerate:protein2genome:local exon 1058224 1058517 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1058222 1058223 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1058141 1058223 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1058141 1058142 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1057733 1058140 . - . KQ414618.1 exonerate:protein2genome:local exon 1057733 1058140 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057733 1058517 375 - . alignment_id 3 ; Query AfOr150 ; Align 1058518 1 294 ; Align 1058141 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr150 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 209 Query range: 0 -> 98 Target range: 1030017 -> 1029723 1 : MetLeuLysGlnLeuThrProGluLysAlaIleHisIleThrTrpLeuSerValAl : 19 ||||||||| ! ! !!:!||||||!:!|||||| !:!!..! :!!! !..!|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1030017 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1029963 20 : aIleThrPheCysTrpProLeuProAlaAsnSerSerLysIleGlnValPheMetP : 38 |.!!|||! !|||||||||||||||:!!!..:!!!!!||| !! !|||.!!...| aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1029962 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1029906 39 : heLysAlaLeuGlnIleIleSerIleIleAsnAlaPheValLeuLeuLeuProLeu : 56 ||||| !|||::! !.!! !:!!:!!||||||!!.||||||!!!||||||||| heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1029905 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1029852 57 : LeuTyrSerIleTyrLeuHisPheAspAspIleValValValPheLysSerIleAl : 75 ||||||:!!:!::!!:!!||| :!!||| !! ! !||| |||:!! !.. LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1029851 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1029795 76 : aLeuCysValGlyLeuSerGlnMetIleIleGlnThrAlaIleCysPheValLysT : 94 !||| :!!!.!||| |||:::......|||||| !:!!|||.!!! !:!!| sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1029794 : CCTGACGCTTGCCctcgtgcaaatatttttccagacTTTCGTTTGCATCGGCCAAT : 1029738 95 : yrAspSerLeuGln : 98 ||||| !!!!||| yrAspHisPheGln 1029737 : ACGATCATTTTCAG : 1029724 vulgar: AfOr150 0 98 . KQ414618.1 1030017 1029723 - 209 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1029724 1030017 209 - . gene_id 4 ; sequence AfOr150 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1029724 1030017 . - . KQ414618.1 exonerate:protein2genome:local exon 1029724 1030017 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1029724 1030017 209 - . alignment_id 4 ; Query AfOr150 ; Align 1030018 1 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr153 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1075 Query range: 0 -> 370 Target range: 1053857 -> 1051862 1 : MetValLysGlyIleThrProGluLysAlaIleHisIleThrTrpLeuSerValAl : 19 |||:!!||| !:!:||||||||||||!.!||| !!|||! !|||!!!|||||||| MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : aLeuThrLeuCysTrpProLeuSerValAsnSerGlyLysThrGlnValPheValP : 38 ||||.!!:!!||||||||||||||| !::!:!!.!!|||.!!|||||| ...| aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 39 : heArgValLeuGlnIleIleSerIleValSerAlaCysMetLeuLeuLeuProLeu : 56 ||::::::||||||||| ||| :!!|||||| !!!:||||||||||||||| heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 57 : SerTyrSerIleTyrLeuHisThrAspAspValIleValPheLeuArgThrIleIl : 75 ! !||||||! !||||||||| !|||||||||||||||.!!! !!:!!:!||| LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 76 : eValPheValGlyValAlaGlnAsnIleIleGlnThrValIleCysPheValLysT : 94 !:!!! :!!|||||| !|||! |||!!:||||||||||||||||||..!!!.| sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCysPheThrAsnT 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGTTTCACCAACT : 1053578 95 : yrTyrProLeuGln >>>> Target Intron 1 >>>> HisValIleGluG : 103 || !!! !|||||| 613 bp !..:!!||| !| yrAspLeuLeuGln++ ++ArgIleIleThrG 1053577 : ACGACCTTCTGCAGgt.........................agCGAATAATTACAG : 1052938 104 : luMetLysIleCysValLysGluAlaGlnLysTyrGluIleGluIlePheGlnLys : 121 |||||! ! ! !|||||||||||||||:!!!:!|||! ||||||.!!!!.!!. luMetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLeuHisAsn 1052937 : AAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCACAAC : 1052884 122 : TyrIleAlaLysLeuLysThrValTrpGlyCysSerIleThrCysMetTyrLeuTh : 140 |||||| !|||! !||| ! !!!::||| !!|||:!!! !!! ! |||||| TyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrTyrLeuCy 1052883 : TATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACATACCTCTG : 1052827 141 : rAlaLeuAlaPheThrIleGlyProValPheMetSerThrProLeuProCysAspA : 159 !||| !..!|||..!:!!||||||||| !!:!: !!!.!|||!!!||| !!..!| sAlaThrCysPheValLeuGlyProValValLeuProAsnProPheProSerSerA 1052826 : TGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGCAGTG : 1052770 160 : laGluTyrProPheGlnLeuAsnTyrThrProValPheAlaIleValTyrPheHis : 177 ||||||||||||||!:::!!||| !||||||:!! !||||||||||||.!.||| laGluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyrLeuHis 1052769 : CAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTACCTGCAC : 1052716 178 : GlnSerPheLeuSerTyrGlnCysLeuAlaHisMetCysIleSerMetPheGlySe : 196 |||||||||:!!|||!:!|||! ! !||||||!!:|||:!!|||!!:||||||:! GlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePheGlyAl 1052715 : CAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTTCGGAGC : 1052659 197 : rLeuLeuLeuTrpPheThrAlaAlaArgPheGluCysLeuCysValGluLeuGlnA : 215 !||||||||||||.!!|||||||||||||||.!.|||||| !:!!|||:!!|||. aLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluValGlnG 1052658 : TCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTTCAAC : 1052602 216 : snAlaThrAspIleAspMetLeuIleValCysIleLysLysGlnLeuHisLeuArg : 233 !.::!:!!..!||| !!|||||||||:!!|||:!!||||||||||||! |||||| lnSerSerSerIleHisMetLeuIleIleCysValLysLysGlnLeuLeuLeuArg 1052601 : AAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCTACTACTGAGG : 1052548 234 : {Ar} >>>> Target Intron 2 >>>> {g}TyrAlaLysLysValIleAs : 241 {||} 65 bp {|}|||||||||:!!|||:!!:! {Ar}++ ++{g}TyrAlaLysGluValValAs 1052547 : {AG}gt.........................ag{G}TACGCCAAAGAAGTGGTTGA : 1052459 242 : nGlyPheArgPheIleIlePheAsnAlaIleGlyLeuSerThrLeuValLeuThrL : 260 !|||||||||.!!|||:!!.!!|||||||||!.!:!!|||! !|||!.!||||||| pGlyPheArgLeuIleValLeuAsnAlaIleAlaMetSerIleLeuAlaLeuThrL 1052458 : CGGTTTTCGGCTTATAGTACTCAACGCTATAGCAATGAGCATTTTGGCTCTTACTC : 1052402 261 : euAlaGlyIleIleLeuIleThr >>>> Target Intron 3 >>>> AsnV : 269 ||::!.!!|||! !||||||! ! 62 bp .!.: euSerSerIleThrLeuIleMet++ ++GluI 1052401 : TAAGTAGTATTACATTAATAATGgt.........................agGAAA : 1052313 270 : alProLysIleLeuLysTyrGlnPheValIleValCysMetThrLeuLeuAlaGlu : 287 !!||| !|||:!!||| |||||||||! !||| !!.!.|||:!!||||||||| leProLeuIleValLysValGlnPheValThrValSerPheThrValLeuAlaGlu 1052312 : TACCGTTAATTGTGAAAGTGCAATTCGTAACTGTAAGCTTCACTGTACTCGCAGAA : 1052259 288 : IleTyrMetTyrThrTrpProAlaAspTyrMetThrAspMet >>>> Target : 302 ||||||||||||.!!||| !!||||||||||||! !|||||| 80 IleTyrMetTyrAlaTrpSerAlaAspTyrMetLysAspMet++ 1052258 : ATTTATATGTACGCATGGTCAGCTGACTACATGAAAGACATGgt............ : 1052212 303 : Intron 4 >>>> SerValAsnValSerArgLysValTyrAspSerMetTrpTy : 315 bp |||!.!!!.||||||!:!!..|||||||||! !! !||||| ++SerAlaLysValSerGlnSerValTyrAspLeuThrTrpTy 1052211 : .............agAGTGCAAAGGTTTCACAAAGTGTGTATGATTTAACGTGGTA : 1052095 316 : rLysGlnThrLeuLysMetGlnLysAsnLeuLeuLysValLeuIlePheGlnArgP : 334 | !|||||||||:::||||||||||||:::||| :::|||:!! !|||..!| rGlyGlnThrLeuGluMetGlnLysAsnValLeuTyrIleLeuValHisGlnGluP 1052094 : CGGACAAACATtggaaatgcagaaaaatgtattatacatattgGTACACCAAGAAC : 1052038 335 : roValSerLeuSerIleSerCysIleLeuProGluLeuThrLeuArgTyrTyrCys : 352 |||||! !||||||:!!|||||||||:!!|||||||||:!!||||||||||||||| roValIleLeuSerValSerCysIleValProGluLeuSerLeuArgTyrTyrCys 1052037 : CGGTAATTCTGTCAGTTAGTTGCATCGTGCCGGAGCTTTCTCTTCGTTATTATTGC : 1051984 353 : Ser >>>> Target Intron 5 >>>> TyrLeuSerAsnValPheSerIle : 361 ||| 65 bp ||||||||||||!.!||||||:!! Ser++ ++TyrLeuSerAsnAlaPheSerVal 1051983 : TCGgt.........................agTACCTGTCAAATGCGTTCTCGGTT : 1051892 362 : PheAlaAlaLeuArgValValIleGlu : 370 |||.!!|||||||||||||||:!:!!: PheThrAlaLeuArgValValLeuAsp 1051891 : TTCACCGCTTTGCGCGTCGTGCTGGAT : 1051863 vulgar: AfOr153 0 370 . KQ414618.1 1053857 1051862 - 1075 M 98 294 5 0 2 I 0 609 3 0 2 M 135 405 S 0 2 5 0 2 I 0 61 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 34 102 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 61 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1051863 1053857 1075 - . gene_id 1 ; sequence AfOr153 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1053564 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053564 1053857 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1053562 1053563 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052951 1053563 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052951 1052952 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052544 1052950 . - . KQ414618.1 exonerate:protein2genome:local exon 1052544 1052950 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052542 1052543 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052479 1052543 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1052479 1052480 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052379 1052478 . - . KQ414618.1 exonerate:protein2genome:local exon 1052379 1052478 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052377 1052378 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052317 1052378 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1052317 1052318 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052215 1052316 . - . KQ414618.1 exonerate:protein2genome:local exon 1052215 1052316 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052213 1052214 . - . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052135 1052214 . - . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 1052135 1052136 . - . intron_id 3 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051979 1052134 . - . KQ414618.1 exonerate:protein2genome:local exon 1051979 1052134 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1051977 1051978 . - . intron_id 5 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1051914 1051978 . - . intron_id 5 KQ414618.1 exonerate:protein2genome:local splice3 1051914 1051915 . - . intron_id 4 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051863 1051913 . - . KQ414618.1 exonerate:protein2genome:local exon 1051863 1051913 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1051863 1053857 1075 - . alignment_id 1 ; Query AfOr153 ; Align 1053858 1 294 ; Align 1052951 99 405 ; Align 1052478 235 99 ; Align 1052317 268 102 ; Align 1052135 302 156 ; Align 1051914 354 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr153 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 337 Query range: 0 -> 234 Target range: 1058517 -> 1057732 1 : MetValLysGlyIleThrProGluLysAlaIleHisIleThrTrpLeuSerValAl : 19 ||| !|||.!!||||||||||||:!!|||||| .!!||| ||||||||||| MetArgLysSerIleThrProGluGlnAlaIleSerPheThrLysLeuSerValAl 1058517 : ATGAGGAAAAGTATAACGCCGGAACAAGCGATCTCGTTCACGAAACTGAGCGTCGC : 1058463 20 : aLeuThrLeuCysTrpProLeuSerValAsnSerGlyLysThrGlnValPheValP : 38 |:!!|||! !! ||||||! !||| ! :!! !!:!|||||||||!!.:!!| aValThrCysSerTrpProProSerProLeuAlaThrArgThrGlnValLeuLeuP 1058462 : TGTAACTTGTTCGTGGCCACCGTCACCTCTGGCGACCAGAACTCAAGTTTTGCTCT : 1058406 39 : heArgValLeuGlnIleIleSerIleValSerAlaCysMetLeuLeuLeuProLeu : 56 ||!.!..!||| !! !! !:!!.!!||||||.!! ! !||||||||||||||| heAsnThrLeuTrpSerThrAlaPheValSerThrIleAlaLeuLeuLeuProLeu 1058405 : TTAATACGTTGTGGAGCACAGCATTCGTTAGCACCATCGCGCTGCTTTTGCCGCTA : 1058352 57 : SerTyrSerIleTyrLeuHisThrAspAspValIleValPheLeuArgThrIleIl : 75 ! ! !.!!|||||| !:!! ! ! ||| !|||:!!.!! !!:!|||:!!! LeuSerGlyIleTyrGluTyrArgLysAspProIleIleLeuGlyLysThrValSe 1058351 : TTGAGCGGAATTTACGAGTACCGTAAAGACCCCATCATTCTTGGGAAAACAGTCAG : 1058295 76 : eValPheValGlyValAlaGlnAsnIleIleGlnThrValIleCysPheValLysT : 94 !:!! ! !!.!||||||||| !|||:!!! !:!!!!:||| ! !!:!! rLeuAlaSerAlaValAlaGlnValAlaIleLysMetIleMetCysArgPheGlnG 1058294 : CCTCGCCTCGGCTGTCGCCCAGGTGGCAATCAAAATGATAATGTGCCGTTTCCAGC : 1058238 95 : yrTyrProLeuGln >>>> Target Intron 1 >>>> HisValIleGluG : 103 ! ! ! !!!!||| 83 bp :!! ! ! lnLysGlnPheGln++ ++ValLeuTyrPheA 1058237 : AGAAGCAATTCCAGgt.........................agGTATTGTACTTCG : 1058128 104 : luMetLysIleCysValLysGluAlaGlnLysTyrGluIleGluIlePheGlnLys : 121 !:|||:!!! !! ! !!:! ! ||| ... ||| :::.!.|||::! spMetGluAsnPheCysArgTyrAlaThrSerLysGluLysValValLeuGlnArg 1058127 : ACATGGAGAATTTCTGCAGATACGCCACCtcgaaggaaaaagttgtcCTGCAACGA : 1058074 122 : TyrIleAlaLysLeuLysThrValTrpGlyCysSerIleThrCysMetTyrLeuTh : 140 |||:!:! !!:!! !||| ! !! ||| !! !||| !!! !:!||||| TyrValAspArgTyrLysTyrPheHisGlyIleTyrIleLeuTrpCysPheLeuTh 1058073 : TACGTGGACAGATACAAATACTTTCATGGGATTTATATATTATGGTGCTTCCTCAC : 1058017 141 : rAlaLeuAlaPheThrIleGlyProValPheMetSerThrProLeuProCysAspA : 159 |.!!:!! ! !!! !! !||||||:!!!:! !! ! !!!!!||| ! !!| rThrIlePheValIleSerGlyProLeuTyrSerProGlnThrPheProThrHisA 1058016 : GACCATCTTCGTCATAAGTGGTCCATTGTACTCACCACAGACGTTCCCCACTCATG : 1057960 160 : laGluTyrProPheGlnLeuAsnTyrThrProValPheAlaIleValTyrPheHis : 177 || !||||||||||||:!!.!.:!!|||! ! !! ::::::||||||||| laIleTyrProPheGlnValGluHisThrLeuPheLysIleValIleTyrPheHis 1057959 : CGATATATCCTTTCCAAGTGGAACATACACTGTTCAagattgttatttatttccat : 1057906 178 : GlnSerPheLeuSerTyrGlnCysLeuAlaHisMetCysIleSerMetPheGlySe : 196 ||||||!!.:!!.!!!:!|||...! !||| !|||..!|||..!! !:! GlnSerLeuValGlyPheGlnAlaSerAlaGlyMetAlaIleAspThrGlnIleAl 1057905 : CAGTCGTTAGTTGGTTTTCAGGCGTCCGCTGGTATGGCCATCGACACTCAAATTGC : 1057849 197 : rLeuLeuLeuTrpPheThrAlaAlaArgPheGluCysLeuCysValGluLeuGlnA : 215 !||||||||| ! !:!.!!||||||||||||||| ||| ! !|||:!!!:!| aLeuLeuLeuArgTyrAlaAlaAlaArgPheGluLeuLeuGlyAsnGluMetArgA 1057848 : TCTTCTTCTGCGATACGCGGCTGCCAGGTTCGAGCTATTGGGAAACGAGATGCGAA : 1057792 216 : snAlaThrAspIleAspMetLeuIleValCysIleLysLysGlnLeuHisLeuArg : 233 |||||!.! ! ! ! !!!! !!.!||||||:!!|||!!. !.!.|||! ! snAlaAsnThrHisCysGluPheAsnAlaCysIleGluLysHisSerGluLeuLeu 1057791 : ATGCAAATACTCACTGTGAATTCAATGCCTGCATAGAGAAGCACAGTGAACTTCTC : 1057738 234 : Arg : 234 ||| Arg 1057737 : AGg : 1057733 vulgar: AfOr153 0 234 . KQ414618.1 1058517 1057732 - 337 M 98 294 5 0 2 I 0 79 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057733 1058517 337 - . gene_id 2 ; sequence AfOr153 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1058224 1058517 . - . KQ414618.1 exonerate:protein2genome:local exon 1058224 1058517 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1058222 1058223 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1058141 1058223 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1058141 1058142 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1057733 1058140 . - . KQ414618.1 exonerate:protein2genome:local exon 1057733 1058140 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057733 1058517 337 - . alignment_id 2 ; Query AfOr153 ; Align 1058518 1 294 ; Align 1058141 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr153 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 318 Query range: 96 -> 234 Target range: 1029179 -> 1028765 97 : LeuGlnHisValIleGluGluMetLysIleCysValLysGluAlaGlnLysTyrGl : 115 |||||| ! :!!||||||||||||||||||||| !:!! !|||:!! !||||| LeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGl 1029179 : TTGCAGAAACTAATCGAAGAAATGAAGATTTGCTGTGAAACAGCGAAACCATACGA : 1029125 116 : uIleGluIlePheGlnLysTyrIleAlaLysLeuLysThrValTrpGlyCysSerI : 134 |! !!!::!!||||||::!|||:!!! !|||! !... ! !!!::! ! !!! uArgAspValPheGlnArgTyrValAspLysTyrSerLeuPheTyrValThrCysS 1029124 : AAGAGACGTCTTTCAACGATACGTCGATAAATACTCTTTATTTTACGTAACATGTT : 1029068 135 : leThrCysMetTyrLeuThrAlaLeuAlaPheThrIleGlyProValPheMetSer : 152 :!!!! .!.||||||||||||:!! !.!...!:!:||| ! !.!!!!:||| erSerTrpPheTyrLeuThrAlaValIleMetValLeuGlySerArgIleIleSer 1029067 : CGTCGTGGTTTTACTTAACAGCAGTTATTATGGTTCTGGGAAGTCGGATTATATCT : 1029014 153 : ThrProLeuProCysAspAlaGluTyrProPheGlnLeuAsnTyrThrProValPh : 171 !|||!!!||| !:!!|||! !|||||||||! :!!|||!:! !|||:!! AspProPheProThrAsnAlaValTyrProPheProValAsnPheGluProLeuAr 1029013 : GATCCTTTTCCAACCAACGCCGTATATCCATTCCCTGTTAACTTTGAACCCTTGAG : 1028957 172 : eAlaIleValTyrPheHisGlnSerPheLeuSerTyrGlnCysLeuAlaHisMetC : 190 ::!|||:!!!:!.!.||||||||||||:!!.!! |||||| !||||||! gSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisThrS 1028956 : AAGTATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACACTA : 1028900 191 : ysIleSerMetPheGlySerLeuLeuLeuTrpPheThrAlaAlaArgPheGluCys : 208 !!!!:!:!:!!.!. !:!!||||||||| |||.!!||||||||||||||| erMetAsnValLeuThrAlaLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIle 1028899 : GTATGAATGTGCTAACTGCATTGTTATTACTATTTGCTGCAGCTCGTTTCGAGATA : 1028846 209 : LeuCysValGluLeuGlnAsnAlaThrAspIleAspMetLeuIleValCysIleLy : 227 ||| :!!||||||::!|||!.!!:!||||||!!:! |||||| !|||!!:|| LeuMetMetGluLeuArgAsnValSerAspIleGluThrLeuIleLysCysMetLy 1028845 : CTGATGATGGAGCTGAGGAATGTCAGTGACATTGAAACACTGATTAAATGTATGAA : 1028789 228 : sLysGlnLeuHisLeuArgArg : 234 |||| ! ! ! !:!!|||||| sLysTyrSerIleValArgArg 1028788 : AAAGTATTCGATCGTACGGAGG : 1028766 vulgar: AfOr153 96 234 . KQ414618.1 1029179 1028765 - 318 M 138 414 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028766 1029179 318 - . gene_id 3 ; sequence AfOr153 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028766 1029179 . - . KQ414618.1 exonerate:protein2genome:local exon 1028766 1029179 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028766 1029179 318 - . alignment_id 3 ; Query AfOr153 ; Align 1029180 97 414 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr153 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 312 Query range: 96 -> 234 Target range: 1038346 -> 1037932 97 : LeuGlnHisValIleGluGluMetLysIleCysValLysGluAlaGlnLysTyrGl : 115 |||||| ! :!!||||||||||||||||||||| !:!! !|||:!! !||||| LeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGl 1038346 : TTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGA : 1038292 116 : uIleGluIlePheGlnLysTyrIleAlaLysLeuLysThrValTrpGlyCysSerI : 134 |! !!!::!!||||||::!|||:!! !|||! ... ::: !! uArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysS 1038291 : AAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTT : 1038235 135 : leThrCysMetTyrLeuThrAlaLeuAlaPheThrIleGlyProValPheMetSer : 152 :!!!! .!.||||||||||||:!! !.!...!:!!||| !:!!.!!!!:||| erSerTrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSer 1038234 : CGTCATGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCC : 1038181 153 : ThrProLeuProCysAspAlaGluTyrProPheGlnLeuAsnTyrThrProValPh : 171 !|||!!!||| !:!!|||! !|||||||||! :!!|||!:! !|||:!! AspProPheProThrAsnAlaValTyrProPheProValAsnPheGluProLeuAr 1038180 : GATCCTTTTCCAACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAG : 1038124 172 : eAlaIleValTyrPheHisGlnSerPheLeuSerTyrGlnCysLeuAlaHisMetC : 190 ::!|||:!!!:!.!.||||||||||||:!!.!! |||||| !|||||| gSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisAlaS 1038123 : AAGCATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTA : 1038067 191 : ysIleSerMetPheGlySerLeuLeuLeuTrpPheThrAlaAlaArgPheGluCys : 208 !!!!:!:!:!!.!!..!:!!||||||||| ||||||.!!|||||||||||| erMetAsnValLeuSerAlaLeuLeuLeuLeuPheThrThrAlaArgPheGluIle 1038066 : GTATGAATGTGCTTTCTGCACTGTTATTGCTATTCACTACAGCtcgtttcgaaata : 1038013 209 : LeuCysValGluLeuGlnAsnAlaThrAspIleAspMetLeuIleValCysIleLy : 227 ||| ..!||||||::!|||!.!!.!||||||!!:! |||||| ! !!!!:|| LeuMetThrGluLeuArgAsnValAsnAspIleGluThrLeuIleLysSerMetLy 1038012 : ttgaTGACGGAGTTGAGGAATGTCAATGATATCGAAACACTGATTAAGAGTATGAA : 1037956 228 : sLysGlnLeuHisLeuArgArg : 234 |||| ! ! ! !:!!|||||| sLysTyrSerThrValArgArg 1037955 : AAAGTATTCGACTGTGCGGAGG : 1037933 vulgar: AfOr153 96 234 . KQ414618.1 1038346 1037932 - 312 M 138 414 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037933 1038346 312 - . gene_id 4 ; sequence AfOr153 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1037933 1038346 . - . KQ414618.1 exonerate:protein2genome:local exon 1037933 1038346 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037933 1038346 312 - . alignment_id 4 ; Query AfOr153 ; Align 1038347 97 414 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr157 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 798 Query range: 0 -> 351 Target range: 1053857 -> 1051978 1 : MetSerArgGlnValThrProGluLysSerValTyrLeuValTrpLeuSerValAl : 19 |||! !!:!|||:!!|||||||||||| !:!! !!:!!:!!|||!!!|||||||| MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : aIleThrPheCysTrpProLeuProAlaAsnThrAlaArgLysLysIleValGlyM : 38 |:!:.!! !!|||||||||||| !!::!::!.!!::!!:! :!!:!!|||.... aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 39 : etLysValLeuLeuIleAlaSerIleIleAsnGlyCysValValIleLeuAlaMet : 56 ..|||:::||| |||...||| |||!:!!.! !:!!:!!:!!||| !!:!! heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 57 : PheTyrTrpIleArgLeuHisLeuAspAspIleIleSerLeuPheLysCysValCy : 75 !!.|||! ! ! !||||||!!!||||||:!!||| !|||! !:!! !!:!!|| LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 76 : sValValLeuCysLeuLeuGlnTyrValValGlnThrIleValCysPheValLysT : 94 |:!! !:!! !!:!!!!!||| :!!:!!||||||:!!:!!||||||..!!!.| sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCysPheThrAsnT 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGTTTCACCAACT : 1053578 95 : yrAspThrLeuGln >>>> Target Intron 1 >>>> ArgValValAspG : 103 ||||| !|||||| 613 bp |||:!!:!! | yrAspLeuLeuGln++ ++ArgIleIleThrG 1053577 : ACGACCTTCTGCAGgt.........................agCGAATAATTACAG : 1052938 104 : luMetMetGlyCysIleAsnGluAlaLys<-><->ThrAspGluIleLeuArgAla : 119 |||||!!: !! !:!!!!.||||||:!! ! |||||||||!.! ! luMetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLeuHisAsn 1052937 : AAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCACAAC : 1052884 120 : TyrAlaSerArgCysAsnThrLeuTyrGlyMetSerLeuLeuSerIleTyrIleCy : 138 ||| !..!!:!|||!!. !!!!|||||| ||||||:!!!!!! !|||:!!|| TyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrTyrLeuCy 1052883 : TATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACATACCTCTG : 1052827 139 : sGlyThrSerPheValPheThrProLeuPheLeuProAsnProPheProPheGluT : 157 |!.!|||!!!||||||!!. !|||:!! !!|||||||||||||||||| !.... sAlaThrCysPheValLeuGlyProValValLeuProAsnProPheProSerSerA 1052826 : TGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGCAGTG : 1052770 158 : hrGluTyrProPheAspValAsnThrThrSerArgSerPheIleIleTyrAlaSer : 175 !!|||||||||||| !|||||| !||| !!! !!:! !|||:!!||| ! ! laGluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyrLeuHis 1052769 : CAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTACCTGCAC : 1052716 176 : HisValLeuAlaIlePheGlnSerThrGlyHisMetCysLeuCysThrPheGlyAl : 194 !!. !!!! !! !||||||! !!:!!.!|||!!:|||:!! !!! !|||||||| GlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePheGlyAl 1052715 : CAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTTCGGAGC : 1052659 195 : aValLeuLeuTrpPheThrAlaAlaArgPheGluCysLeuIleGlyGluLeuArgS : 213 |:!!|||||||||.!!|||||||||||||||.!.||||||! ! !|||:!!!:!. aLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluValGlnG 1052658 : TCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTTCAAC : 1052602 214 : erValThrSerIleAspAlaLeuValValCysLeuLysLysHisSerArgLeuLys : 231 .! !:!!|||||| !! !|||:!!:!!|||:!!||||||!!. !! !|||!:! lnSerSerSerIleHisMetLeuIleIleCysValLysLysGlnLeuLeuLeuArg 1052601 : AAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCTACTACTGAGG : 1052548 232 : {Ar} >>>> Target Intron 2 >>>> {g}TyrAlaGluGluValValSe : 239 {||} 65 bp {|}||||||:!!|||||||||.. {Ar}++ ++{g}TyrAlaLysGluValValAs 1052547 : {AG}gt.........................ag{G}TACGCCAAAGAAGTGGTTGA : 1052459 240 : rCysIleArgPheLeuValPheHisAlaIleLeuLeuGlyThrPheValLeuThrL : 258 ! !!.!!|||.!!:!!|||.!!:!!|||||| !:!!.!!! !!!.!.!||||||| pGlyPheArgLeuIleValLeuAsnAlaIleAlaMetSerIleLeuAlaLeuThrL 1052458 : CGGTTTTCGGCTTATAGTACTCAACGCTATAGCAATGAGCATTTTGGCTCTTACTC : 1052402 259 : euCysGlyIleValLeuIleIle >>>> Target Intron 3 >>>> AsnS : 267 || !!.!!|||..!||||||!!: 62 bp .!.! euSerSerIleThrLeuIleMet++ ++GluI 1052401 : TAAGTAGTATTACATTAATAATGgt.........................agGAAA : 1052313 268 : erProLeuIleValLysAlaGlnPheIleIleIleCysValCysIleLeuLeuGlu : 285 !|||||||||||||||!.!||||||:!!! !:!! !! !! !:!!||| !||| leProLeuIleValLysValGlnPheValThrValSerPheThrValLeuAlaGlu 1052312 : TACCGTTAATTGTGAAAGTGCAATTCGTAACTGTAAGCTTCACTGTACTCGCAGAA : 1052259 286 : IleTyrLeuTyrAlaLeuProAlaAspTyrMetTyrAspMet >>>> Target : 300 ||||||:!!||||||! ! !!|||||||||||| ! |||||| 80 IleTyrMetTyrAlaTrpSerAlaAspTyrMetLysAspMet++ 1052258 : ATTTATATGTACGCATGGTCAGCTGACTACATGAAAGACATGgt............ : 1052212 301 : Intron 4 >>>> SerMetAsnIleSerArgSerValTyrAspSerMetTrpTy : 313 bp ||| !!.:!!|||!:!||||||||||||! !! !||||| ++SerAlaLysValSerGlnSerValTyrAspLeuThrTrpTy 1052211 : .............agAGTGCAAAGGTTTCACAAAGTGTGTATGATTTAACGTGGTA : 1052095 314 : rGluGlnLysLeuAspLeuGlnLysAlaLeuLeuThrValLeuAlaPheGlnLysP : 332 |! !|||! !|||::::::|||||| :::||| :::|||!.! !|||:!!| rGlyGlnThrLeuGluMetGlnLysAsnValLeuTyrIleLeuValHisGlnGluP 1052094 : CGGACAAACATtggaaatgcagaaaaatgtattatacatattgGTACACCAAGAAC : 1052038 333 : roIleProValSerIleAsnValLeuLeuProGluLeuThrIleArgTyrTyrCys : 350 ||:!! !:!!|||:!!!:! !:!!:!!|||||||||:!!:!!|||||||||||| roValIleLeuSerValSerCysIleValProGluLeuSerLeuArgTyrTyrCys 1052037 : CGGTAATTCTGTCAGTTAGTTGCATCGTGCCGGAGCTTTCTCTTCGTTATTATTGC : 1051984 351 : Ser : 351 ||| Ser 1051983 : TCG : 1051979 vulgar: AfOr157 0 351 . KQ414618.1 1053857 1051978 - 798 M 98 294 5 0 2 I 0 609 3 0 2 M 14 42 G 0 6 M 119 357 S 0 2 5 0 2 I 0 61 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 34 102 5 0 2 I 0 76 3 0 2 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1051979 1053857 798 - . gene_id 1 ; sequence AfOr157 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1053564 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053564 1053857 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1053562 1053563 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052951 1053563 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052951 1052952 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052544 1052950 . - . KQ414618.1 exonerate:protein2genome:local exon 1052544 1052950 . - . insertions 6 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052542 1052543 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052479 1052543 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1052479 1052480 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052379 1052478 . - . KQ414618.1 exonerate:protein2genome:local exon 1052379 1052478 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052377 1052378 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052317 1052378 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1052317 1052318 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052215 1052316 . - . KQ414618.1 exonerate:protein2genome:local exon 1052215 1052316 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052213 1052214 . - . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052135 1052214 . - . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 1052135 1052136 . - . intron_id 3 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051979 1052134 . - . KQ414618.1 exonerate:protein2genome:local exon 1051979 1052134 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1051979 1053857 798 - . alignment_id 1 ; Query AfOr157 ; Align 1053858 1 294 ; Align 1052951 99 42 ; Align 1052903 113 357 ; Align 1052478 233 99 ; Align 1052317 266 102 ; Align 1052135 300 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr157 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 304 Query range: 0 -> 232 Target range: 1039184 -> 1037932 1 : MetSerArgGlnValThrProGluLysSerValTyrLeuValTrpLeuSerValAl : 19 |||! !!:! ! !!:!||||||!:!:!!:!!! !|||||| :!!! !..!|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1039184 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1039130 20 : aIleThrPheCysTrpProLeuProAlaAsnThrAlaArgLysLysIleValGlyM : 38 |.!!|||! !|||||||||||||||:!!!...!!.!!!:!... !:!::!! !. aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1039129 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1039073 39 : etLysValLeuLeuIleAlaSerIleIleAsnGlyCysValValIleLeuAlaMet : 56 !.|||:!!||| ! ! ! !:!!:!!|||!.!! |||:!!.!!||| !!:!! heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1039072 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1039019 57 : PheTyrTrpIleArgLeuHisLeuAspAspIleIleSerLeuPheLysCysValCy : 75 !!.||| :!:!.!:!!|||! !:!!||| ! !:!:!! |||..!!.!|| LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1039018 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1038962 76 : sValValLeuCysLeuLeuGlnTyrValValGlnThrIleValCysPheValLysT : 94 |:!!..!|||..!|||:::||| ||||||...||||||.!!! !:!!| sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1038961 : CCTGACGCTTGCTctcgtgcaaatatttttccaaactttcgttTGCATCGGTCAAT : 1038905 95 : yr{A} >>>> Target Intron 1 >>>> {sp}ThrLeuGlnArgValVal : 101 ||{|} 550 bp {||}|||||||||!:!:!!:!! yr{A}-+ -+{sp}ThrLeuGlnLysLeuIle 1038904 : AC{G}at.........................tg{AC}ACGTTGCAGAAACTAATC : 1038334 102 : AspGluMetMetGlyCysIleAsnGluAlaLysThrAspGlu<-><->IleLeuAr : 118 !!:||||||! ! !||| !.!. !|||||| !! !!||| :!!!!!!: GluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheGl 1038333 : GAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGACGTCTTCCA : 1038277 119 : gAlaTyrAlaSerArgCysAsnThrLeuTyrGlyMetSerLeuLeuSerIleTyrI : 137 ! !|||!.!!:!!:! ::: ...||| !!! !! !!!!.!!|||: nArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheTyrL 1038276 : ACGATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTTACT : 1038220 138 : leCysGlyThrSerPheValPheThrProLeuPheLeuProAsnProPheProPhe : 155 !! !.!! !! !.!.|||.!! ! !|||.!!:!! !!:!!||||||||| ! euThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPheProThr 1038219 : TAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACC : 1038166 156 : GluThrGluTyrProPheAspValAsnThrThrSerArgSerPheIleIleTyrAl : 174 .!..!!! !||||||||| !|||||| ! ! !! !!!! !||||||!:! AsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMe 1038165 : AACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTAT : 1038109 175 : aSerHisValLeuAlaIlePheGlnSerThrGlyHisMetCysLeuCysThrPheG : 193 ! !!!. !!!!!.! !.!.|||!!!.!!!.!||| !!:!! !..!.!!. tHisGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuS 1038108 : GCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTT : 1038052 194 : lyAlaValLeuLeuTrpPheThrAlaAlaArgPheGluCysLeuIleGlyGluLeu : 211 .!|||:!!|||||| ||||||.!!|||||||||||| |||:!: !|||||| erAlaLeuLeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeu 1038051 : CTGCACTGTTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTG : 1037998 212 : ArgSerValThrSerIleAspAlaLeuValValCysLeuLysLysHisSerArgLe : 230 |||!:!|||!.!..!|||!!:.!!|||:!! ! !!:!!||||||:!!|||! !:! ArgAsnValAsnAspIleGluThrLeuIleLysSerMetLysLysTyrSerThrVa 1037997 : AGGAATGTCAATGATATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGT : 1037941 231 : uLysArg : 232 !::!||| lArgArg 1037940 : GCGGAGG : 1037933 vulgar: AfOr157 0 232 . KQ414618.1 1039184 1037932 - 304 M 94 282 S 0 1 5 0 2 I 0 546 3 0 2 S 1 2 M 20 60 G 0 6 M 117 351 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037933 1039184 304 - . gene_id 2 ; sequence AfOr157 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1038902 1039184 . - . KQ414618.1 exonerate:protein2genome:local exon 1038902 1039184 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1038900 1038901 . - . intron_id 1 ; splice_site "AT" KQ414618.1 exonerate:protein2genome:local intron 1038352 1038901 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1038352 1038353 . - . intron_id 0 ; splice_site "TG" KQ414618.1 exonerate:protein2genome:local cds 1037933 1038351 . - . KQ414618.1 exonerate:protein2genome:local exon 1037933 1038351 . - . insertions 6 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037933 1039184 304 - . alignment_id 2 ; Query AfOr157 ; Align 1039185 1 282 ; Align 1038350 96 60 ; Align 1038284 116 351 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr157 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 174 Query range: 0 -> 98 Target range: 1030017 -> 1029723 1 : MetSerArgGlnValThrProGluLysSerValTyrLeuValTrpLeuSerValAl : 19 |||! !!:! ! !!:!||||||!:!:!!:!!! !|||||| :!!! !..!|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1030017 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1029963 20 : aIleThrPheCysTrpProLeuProAlaAsnThrAlaArgLysLysIleValGlyM : 38 |.!!|||! !|||||||||||||||:!!!...!!.!!!:!... !:!::!! !. aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1029962 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1029906 39 : etLysValLeuLeuIleAlaSerIleIleAsnGlyCysValValIleLeuAlaMet : 56 !.|||:!!||| ! ! ! !:!!:!!|||!.!! |||:!!.!!||| !!:!! heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1029905 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1029852 57 : PheTyrTrpIleArgLeuHisLeuAspAspIleIleSerLeuPheLysCysValCy : 75 !!.||| :!:!.!:!!|||! !:!!||| ! !:!:!! |||..!!.!|| LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1029851 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1029795 76 : sValValLeuCysLeuLeuGlnTyrValValGlnThrIleValCysPheValLysT : 94 |:!!..!|||..!|||:::||| ||||||.!!||||||.!!! !:!!| sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1029794 : CCTGACGCTTGCCctcgtgcaaatatttttccagacTTTCGTTTGCATCGGCCAAT : 1029738 95 : yrAspThrLeuGln : 98 ||||| !!!!||| yrAspHisPheGln 1029737 : ACGATCATTTTCAG : 1029724 vulgar: AfOr157 0 98 . KQ414618.1 1030017 1029723 - 174 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1029724 1030017 174 - . gene_id 3 ; sequence AfOr157 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1029724 1030017 . - . KQ414618.1 exonerate:protein2genome:local exon 1029724 1030017 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1029724 1030017 174 - . alignment_id 3 ; Query AfOr157 ; Align 1030018 1 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr151_1 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 996 Query range: 0 -> 370 Target range: 1053857 -> 1051862 1 : MetThrLysGlnValThrProGluLysAlaIleGlnIleIleTrpLeuSerValAl : 19 ||| !||||||:!!||||||||||||!.!|||.!.|||||||||!!!|||||||| MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : aSerThrPheCysTrpProLeuSerIleAsnSerSerLysThrGlnValPheValP : 38 | !.!! !!|||||||||||||||! !::!:!!||||||.!!|||||| ...| aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 39 : heArgValLeuGlnIleThrSerIleIleAsnAlaCysMetLeuLeuLeuProLeu : 56 ||::::::||||||||| ||| |||!:!||| !!!:||||||||||||||| heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 57 : LeuTyrSerAlaTyrLeuHisPheAspAspIleIleThrValSerLysCysAlaGl : 75 |||||||||.!!||||||||||||||||||:!!|||..!:!!|||:!! !! ! ! LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 76 : yLeuAlaIleAlaLeuThrGlnIleIleValGlnThrSerIleCysPheValLysT : 94 !|||:!!!!:!.!:!! !|||!!:|||:!!|||||| !|||||||||..!!!.| sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCysPheThrAsnT 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGTTTCACCAACT : 1053578 95 : yrAspValLeuGln >>>> Target Intron 1 >>>> HisValIleGluG : 103 |||||:!!|||||| 613 bp !..:!!||| !| yrAspLeuLeuGln++ ++ArgIleIleThrG 1053577 : ACGACCTTCTGCAGgt.........................agCGAATAATTACAG : 1052938 104 : luMetIleThrTyrValLysGluAlaGlnGlnTyrGluArgLysIleIleCysLys : 121 ||||||||||||||||||||||||||||||||!:!||||||:!!|||:!! !!!. luMetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLeuHisAsn 1052937 : AAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCACAAC : 1052884 122 : TyrIleLysLysCysHisIlePheTyrGlyCysSerIleValCysValTyrLeuTh : 140 ||||||:!!|||||| ! :!!||||||||| !!|||:!!:!!!! ..!|||||| TyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrTyrLeuCy 1052883 : TATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACATACCTCTG : 1052827 141 : rAlaIleAlaPheIleIleGlyProValPheLeuSerThrSerPheProAlaAspA : 159 !|||! !..!|||:!!:!!||||||||| !!||| !!!.! !!||||||::!..!| sAlaThrCysPheValLeuGlyProValValLeuProAsnProPheProSerSerA 1052826 : TGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGCAGTG : 1052770 160 : laGluTyrProPheGlnIleAsnTyrThrProValLysValIleIleTyrLeuGln : 177 ||||||||||||||!:::!!||| !||||||:!!!!.!.!|||:!!||||||!!. laGluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyrLeuHis 1052769 : CAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTACCTGCAC : 1052716 178 : GlnSerLeuValAlaPheGlnCysThrGlyHisValCysIleSerIlePheGlyAl : 196 ||||||!!!:!!::!||||||! !!:!!.!|||:!!|||:!!|||||||||||||| GlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePheGlyAl 1052715 : CAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTTCGGAGC : 1052659 197 : aLeuLeuLeuTrpIleThrAlaAlaArgPheGluCysLeuAlaValGluLeuGlnL : 215 |||||||||||||||||||||||||||||||.!.||||||.!!:!!|||:!!|||: aLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluValGlnG 1052658 : TCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTTCAAC : 1052602 216 : ysIleThrAsnIleSerMetLeuIleAlaCysValLysLysGlnLeuHisIleArg : 233 !!! !:!!!:!||| !||||||||| !||||||||||||||||||! :!:||| lnSerSerSerIleHisMetLeuIleIleCysValLysLysGlnLeuLeuLeuArg 1052601 : AAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCTACTACTGAGG : 1052548 234 : ArgTyrAlaLysArgValValAsnSerLeuArgPheMetIle-----ValTyrThr : 250 |||! !::: ... !|||!!::!!#####:!!!:!.!! Arg******GluAspPheAlaIleTyrAspTyrPheIleVal#####LeuPheAla 1052547 : AGGTGATAAGaagattttgcaatttatgatTACTTTATCGTAACTGATTGTTTGCC : 1052492 251 : IleGlyIleSerIleValIleLeuValLeuAspGlyIleIleMetIleMetLysAl : 269 ||| !.!!!!! !!.!! ! !|||:!!||||||.!! :!:|||:!: IleIlePheArgTyrAlaLysGluValValAspGlyPheArgLeuIleValLeuAs 1052491 : ATAATTTTTAGGTACGCCAAAGAAGTGGTTGACGGTTTTCGGCTTATAGTACTCAA : 1052435 270 : aSerLeuIleValLysIleGlnPheIleGlyIleSerLeuThrAlaLeuValGlu : 288 !:!!:!! !:!!!..||| ! !:!! !:!!||| !! !.!!|||:!! ! nAlaIleAlaMetSerIleLeuAlaLeuThrLeuSerSerIleThrLeuIleMet+ 1052434 : CGCTATAGCAATGAGCATTTTGGCTCTTACTCTAAGTAGTATTACATTAATAATGg : 1052378 289 : >>>> Target Intron 2 >>>> IleTyrIleTyrThrTrpProAlaAspH : 297 122 bp ||||||!!:|||.!!||| !!||||||: + +-IleTyrMetTyrAlaTrpSerAlaAspT 1052377 : t.........................aaATTTATATGTACGCATGGTCAGCTGACT : 1052229 298 : isMetLysAspMet >>>> Target Intron 3 >>>> SerIleAspValS : 306 !!|||||||||||| 80 bp ||| ! ! |||| yrMetLysAspMet++ ++SerAlaLysValS 1052228 : ACATGAAAGACATGgt.........................agAGTGCAAAGGTTT : 1052122 307 : erGlnSerAlaTyrAsnValThrTrpTyrLysGlnThrLeuLysMetGlnLysAsn : 324 ||||||||!.!|||:!!:!!||||||||| !|||||||||:::|||||||||||| erGlnSerValTyrAspLeuThrTrpTyrGlyGlnThrLeuGluMetGlnLysAsn 1052121 : CACAAAGTGTGTATGATTTAACGTGGTACGGACAAACATtggaaatgcagaaaaat : 1052068 325 : LeuLeuAsnValLeuValTyrGlnGlnProIleIleLeuSerValAsnCysIleLe : 343 :::||| :::||||||:!!|||:!!|||:!!||||||||||||!:!||||||:! ValLeuTyrIleLeuValHisGlnGluProValIleLeuSerValSerCysIleVa 1052067 : gtattatacatattgGTACACCAAGAACCGGTAATTCTGTCAGTTAGTTGCATCGT : 1052011 344 : uSerGluLeuSerLeuArgTyrTyrCysSer >>>> Target Intron 4 >> : 354 ! !!||||||||||||||||||||||||||| 65 bp lProGluLeuSerLeuArgTyrTyrCysSer++ 1052010 : GCCGGAGCTTTCTCTTCGTTATTATTGCTCGgt....................... : 1051976 355 : >> TyrLeuSerAsnValPheSerIlePheThrThrIleArgValMetValGlu : 370 ||||||||||||!.!||||||:!!||||||.!!:!:||||||:!!:!!!!: ++TyrLeuSerAsnAlaPheSerValPheThrAlaLeuArgValValLeuAsp 1051975 : ..agTACCTGTCAAATGCGTTCTCGGTTTTCACCGCTTTGCGCGTCGTGCTGGAT : 1051863 vulgar: AfOr151_1 0 370 . KQ414618.1 1053857 1051862 - 996 M 98 294 5 0 2 I 0 609 3 0 2 M 149 447 F 0 5 M 40 120 5 0 2 I 0 118 3 0 2 M 14 42 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 61 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1051863 1053857 996 - . gene_id 1 ; sequence AfOr151_1 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1053564 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053564 1053857 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1053562 1053563 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052951 1053563 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052951 1052952 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052379 1052950 . - . KQ414618.1 exonerate:protein2genome:local exon 1052379 1052950 . - . insertions 0 ; deletions 0 ; frameshifts 5 KQ414618.1 exonerate:protein2genome:local splice5 1052377 1052378 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052257 1052378 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1052257 1052258 . - . intron_id 1 ; splice_site "AA" KQ414618.1 exonerate:protein2genome:local cds 1052215 1052256 . - . KQ414618.1 exonerate:protein2genome:local exon 1052215 1052256 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052213 1052214 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052135 1052214 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1052135 1052136 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051979 1052134 . - . KQ414618.1 exonerate:protein2genome:local exon 1051979 1052134 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1051977 1051978 . - . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1051914 1051978 . - . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 1051914 1051915 . - . intron_id 3 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051863 1051913 . - . KQ414618.1 exonerate:protein2genome:local exon 1051863 1051913 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1051863 1053857 996 - . alignment_id 1 ; Query AfOr151_1 ; Align 1053858 1 294 ; Align 1052951 99 447 ; Align 1052499 248 120 ; Align 1052257 288 42 ; Align 1052135 302 156 ; Align 1051914 354 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr151_1 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 437 Query range: 0 -> 234 Target range: 1039184 -> 1037932 1 : MetThrLysGlnValThrProGluLysAlaIleGlnIleIleTrpLeuSerValAl : 19 ||| !||| ! !!:!||||||!:!||||||...:!!:!! :!!! !..!|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1039184 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1039130 20 : aSerThrPheCysTrpProLeuSerIleAsnSerSerLysThrGlnValPheValP : 38 |! !|||! !|||||||||||| !! !..:!!!!!|||:!!! !|||.!! !| aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1039129 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1039073 39 : heArgValLeuGlnIleThrSerIleIleAsnAlaCysMetLeuLeuLeuProLeu : 56 ||!:!:!!|||::! ! ! !:!!:!!||||||! :!!|||!!!||||||||| heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1039072 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1039019 57 : LeuTyrSerAlaTyrLeuHisPheAspAspIleIleThrValSerLysCysAlaGl : 75 ||||||:!! !:!!:!!||| :!!||| ! !.!|||:!!|||..!||| ! LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1039018 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1038962 76 : yLeuAlaIleAlaLeuThrGlnIleIleValGlnThrSerIleCysPheValLysT : 94 !|||.!!:!!||||||...||||||... |||||| :::|||.!!! !:!!| sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1038961 : CCTGACGCTTGCTctcgtgcaaatatttttccaaactttcgttTGCATCGGTCAAT : 1038905 95 : yr{A} >>>> Target Intron 1 >>>> {sp}ValLeuGlnHisValIle : 101 ||{|} 550 bp {||}..!|||||| ! :!!||| yr{A}-+ -+{sp}ThrLeuGlnLysLeuIle 1038904 : AC{G}at.........................tg{AC}ACGTTGCAGAAACTAATC : 1038334 102 : GluGluMetIleThrTyrValLysGluAlaGlnGlnTyrGluArgLysIleIleCy : 120 |||||||||! ! !! ! !:!! !|||:!!! !||||||||| ! :!!.!! GluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheGl 1038333 : GAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGACGTCTTCCA : 1038277 121 : sLysTyrIleLysLysCysHisIlePheTyrGlyCysSerIleValCysValTyrL : 139 ::!|||:!!!!.||| :::|||||| !! !!! !!|||| nArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheTyrL 1038276 : ACGATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTTACT : 1038220 140 : euThrAlaIleAlaPheIleIleGlyProValPheLeuSerThrSerPheProAla : 157 ||||||||||| !.!.:!!:!!||| !:!!.!!:!!||| ! !!||||||.!! euThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPheProThr 1038219 : TAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACC : 1038166 158 : AspAlaGluTyrProPheGlnIleAsnTyrThrProValLysValIleIleTyrLe : 176 :!!|||! !|||||||||! :!!|||!:! !|||:!!!:! !||||||!:!:! AsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMe 1038165 : AACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTAT : 1038109 177 : uGlnGlnSerLeuValAlaPheGlnCysThrGlyHisValCysIleSerIlePheG : 195 !!!.||||||!!!|||!.!.!.||||||.!!!.!|||!.! !!!!:!:!:!:.!!. tHisGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuS 1038108 : GCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTT : 1038052 196 : lyAlaLeuLeuLeuTrpIleThrAlaAlaArgPheGluCysLeuAlaValGluLeu : 213 .!|||||||||||| .!!|||.!!|||||||||||| ||| !..!|||||| erAlaLeuLeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeu 1038051 : CTGCACTGTTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTG : 1037998 214 : GlnLysIleThrAsnIleSerMetLeuIleAlaCysValLysLysGlnLeuHisIl : 232 ::!!!.:!!!.!:!!|||..!! |||||| ! !!:!!|||||| ! ! ! !:! ArgAsnValAsnAspIleGluThrLeuIleLysSerMetLysLysTyrSerThrVa 1037997 : AGGAATGTCAATGATATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGT : 1037941 233 : eArgArg : 234 :|||||| lArgArg 1037940 : GCGGAGG : 1037933 vulgar: AfOr151_1 0 234 . KQ414618.1 1039184 1037932 - 437 M 94 282 S 0 1 5 0 2 I 0 546 3 0 2 S 1 2 M 139 417 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037933 1039184 437 - . gene_id 2 ; sequence AfOr151_1 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1038902 1039184 . - . KQ414618.1 exonerate:protein2genome:local exon 1038902 1039184 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1038900 1038901 . - . intron_id 1 ; splice_site "AT" KQ414618.1 exonerate:protein2genome:local intron 1038352 1038901 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1038352 1038353 . - . intron_id 0 ; splice_site "TG" KQ414618.1 exonerate:protein2genome:local cds 1037933 1038351 . - . KQ414618.1 exonerate:protein2genome:local exon 1037933 1038351 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037933 1039184 437 - . alignment_id 2 ; Query AfOr151_1 ; Align 1039185 1 282 ; Align 1038350 96 417 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr151_1 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 361 Query range: 0 -> 234 Target range: 1058517 -> 1057732 1 : MetThrLysGlnValThrProGluLysAlaIleGlnIleIleTrpLeuSerValAl : 19 |||! !|||...:!!|||||||||:!!||||||..!.!!! ||||||||||| MetArgLysSerIleThrProGluGlnAlaIleSerPheThrLysLeuSerValAl 1058517 : ATGAGGAAAAGTATAACGCCGGAACAAGCGATCTCGTTCACGAAACTGAGCGTCGC : 1058463 20 : aSerThrPheCysTrpProLeuSerIleAsnSerSerLysThrGlnValPheValP : 38 | !|||! !! ||||||! !||| ! :!!!!!!:!|||||||||!!.:!!| aValThrCysSerTrpProProSerProLeuAlaThrArgThrGlnValLeuLeuP 1058462 : TGTAACTTGTTCGTGGCCACCGTCACCTCTGGCGACCAGAACTCAAGTTTTGCTCT : 1058406 39 : heArgValLeuGlnIleThrSerIleIleAsnAlaCysMetLeuLeuLeuProLeu : 56 ||!.!..!||| !! !|||:!!.!!:!!!:!.!! ! !||||||||||||||| heAsnThrLeuTrpSerThrAlaPheValSerThrIleAlaLeuLeuLeuProLeu 1058405 : TTAATACGTTGTGGAGCACAGCATTCGTTAGCACCATCGCGCTGCTTTTGCCGCTA : 1058352 57 : LeuTyrSerAlaTyrLeuHisPheAspAspIleIleThrValSerLysCysAlaGl : 75 ||| !.!! !||| !:!! ! ! ||| !|||! !:!!.!!||| !.!.! LeuSerGlyIleTyrGluTyrArgLysAspProIleIleLeuGlyLysThrValSe 1058351 : TTGAGCGGAATTTACGAGTACCGTAAAGACCCCATCATTCTTGGGAAAACAGTCAG : 1058295 76 : yLeuAlaIleAlaLeuThrGlnIleIleValGlnThrSerIleCysPheValLysT : 94 !|||||| |||:!!.!!|||:!: !:!!:!!! !! !!!:||| ! !!:!! rLeuAlaSerAlaValAlaGlnValAlaIleLysMetIleMetCysArgPheGlnG 1058294 : CCTCGCCTCGGCTGTCGCCCAGGTGGCAATCAAAATGATAATGTGCCGTTTCCAGC : 1058238 95 : yrAspValLeuGln >>>> Target Intron 1 >>>> HisValIleGluG : 103 ! ! !!!!||| 83 bp :!! ! ! lnLysGlnPheGln++ ++ValLeuTyrPheA 1058237 : AGAAGCAATTCCAGgt.........................agGTATTGTACTTCG : 1058128 104 : luMetIleThrTyrValLysGluAlaGlnGlnTyrGluArgLysIleIleCysLys : 121 !:||| !.!!:! !!:! ! ||| ... |||::: ::::!: ::! spMetGluAsnPheCysArgTyrAlaThrSerLysGluLysValValLeuGlnArg 1058127 : ACATGGAGAATTTCTGCAGATACGCCACCtcgaaggaaaaagttgtcCTGCAACGA : 1058074 122 : TyrIleLysLysCysHisIlePheTyrGlyCysSerIleValCysValTyrLeuTh : 140 |||:!: ! !:!! ! ! !|||:!!||| !! !|||:!!!! !!:!||||| TyrValAspArgTyrLysTyrPheHisGlyIleTyrIleLeuTrpCysPheLeuTh 1058073 : TACGTGGACAGATACAAATACTTTCATGGGATTTATATATTATGGTGCTTCCTCAC : 1058017 141 : rAlaIleAlaPheIleIleGlyProValPheLeuSerThrSerPheProAlaAspA : 159 |.!!||| ! !!|||! !||||||:!!!:!! ! !! !!!!||||||.!! !!| rThrIlePheValIleSerGlyProLeuTyrSerProGlnThrPheProThrHisA 1058016 : GACCATCTTCGTCATAAGTGGTCCATTGTACTCACCACAGACGTTCCCCACTCATG : 1057960 160 : laGluTyrProPheGlnIleAsnTyrThrProValLysValIleIleTyrLeuGln : 177 || !||||||||||||:!:.!.:!!|||! ! !!|||::::::||||||...... laIleTyrProPheGlnValGluHisThrLeuPheLysIleValIleTyrPheHis 1057959 : CGATATATCCTTTCCAAGTGGAACATACACTGTTCAagattgttatttatttccat : 1057906 178 : GlnSerLeuValAlaPheGlnCysThrGlyHisValCysIleSerIlePheGlyAl : 196 ||||||||||||!.!||||||...:!!!.! !:!!..!|||..!! ! !|| GlnSerLeuValGlyPheGlnAlaSerAlaGlyMetAlaIleAspThrGlnIleAl 1057905 : CAGTCGTTAGTTGGTTTTCAGGCGTCCGCTGGTATGGCCATCGACACTCAAATTGC : 1057849 197 : aLeuLeuLeuTrpIleThrAlaAlaArgPheGluCysLeuAlaValGluLeuGlnL : 215 |||||||||| ! !.!!||||||||||||||| |||!.! !|||:!!!:!! aLeuLeuLeuArgTyrAlaAlaAlaArgPheGluLeuLeuGlyAsnGluMetArgA 1057848 : TCTTCTTCTGCGATACGCGGCTGCCAGGTTCGAGCTATTGGGAAACGAGATGCGAA : 1057792 216 : ysIleThrAsnIleSerMetLeuIleAlaCysValLysLysGlnLeuHisIleArg : 233 !. !!.!!.! !!!! !!!! !||||||:!!:!!|||!!. !.!.:!!! ! snAlaAsnThrHisCysGluPheAsnAlaCysIleGluLysHisSerGluLeuLeu 1057791 : ATGCAAATACTCACTGTGAATTCAATGCCTGCATAGAGAAGCACAGTGAACTTCTC : 1057738 234 : Arg : 234 ||| Arg 1057737 : AGg : 1057733 vulgar: AfOr151_1 0 234 . KQ414618.1 1058517 1057732 - 361 M 98 294 5 0 2 I 0 79 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057733 1058517 361 - . gene_id 3 ; sequence AfOr151_1 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1058224 1058517 . - . KQ414618.1 exonerate:protein2genome:local exon 1058224 1058517 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1058222 1058223 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1058141 1058223 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1058141 1058142 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1057733 1058140 . - . KQ414618.1 exonerate:protein2genome:local exon 1057733 1058140 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057733 1058517 361 - . alignment_id 3 ; Query AfOr151_1 ; Align 1058518 1 294 ; Align 1058141 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr151_1 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 203 Query range: 0 -> 98 Target range: 1030017 -> 1029723 1 : MetThrLysGlnValThrProGluLysAlaIleGlnIleIleTrpLeuSerValAl : 19 ||| !||| ! !!:!||||||!:!||||||...:!!:!! :!!! !..!|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1030017 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1029963 20 : aSerThrPheCysTrpProLeuSerIleAsnSerSerLysThrGlnValPheValP : 38 |! !|||! !|||||||||||| !! !..:!!!!!|||:!!! !|||.!! !| aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1029962 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1029906 39 : heArgValLeuGlnIleThrSerIleIleAsnAlaCysMetLeuLeuLeuProLeu : 56 ||!:!:!!|||::! ! ! !:!!:!!||||||! :!!|||!!!||||||||| heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1029905 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1029852 57 : LeuTyrSerAlaTyrLeuHisPheAspAspIleIleThrValSerLysCysAlaGl : 75 ||||||:!! !:!!:!!||| :!!||| ! !.!|||:!!|||..!||| ! LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1029851 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1029795 76 : yLeuAlaIleAlaLeuThrGlnIleIleValGlnThrSerIleCysPheValLysT : 94 !|||.!!:!!||||||...||||||... ||||||! !:!!|||.!!! !:!!| sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1029794 : CCTGACGCTTGCCctcgtgcaaatatttttccagacTTTCGTTTGCATCGGCCAAT : 1029738 95 : yrAspValLeuGln : 98 ||||| !!!!||| yrAspHisPheGln 1029737 : ACGATCATTTTCAG : 1029724 vulgar: AfOr151_1 0 98 . KQ414618.1 1030017 1029723 - 203 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1029724 1030017 203 - . gene_id 4 ; sequence AfOr151_1 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1029724 1030017 . - . KQ414618.1 exonerate:protein2genome:local exon 1029724 1030017 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1029724 1030017 203 - . alignment_id 4 ; Query AfOr151_1 ; Align 1030018 1 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr151_1 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 165 Query range: 96 -> 232 Target range: 1062772 -> 1062364 97 : LeuGlnHisValIleGluGluMetIleThrTyrValLysGluAlaGlnGlnTyrGl : 115 :!!||| :!!:!!! !:!!:!:! .!!!:!||||||! !|||.!.:!! !!|| IleGlnValLeuValGlyLysValLysAlaPheValLysValAlaAsnLysAsnGl 1062772 : ATTCAGGTGTTGGTAGGAAAAGTAAAGGCGTTTGTAAAAGTGGCAAACAAGAACGA : 1062718 116 : uArgLysIleIleCysLysTyrIleLysLysCysHisIlePheTyrGlyCysSerI : 134 |! !||||||||| !|||:!: ! ::!! ! ! !|||!:!||| ! ! uIleLysIleIleGlnGlyTyrValAspArgTyrLysArgPhePheGlyThrIleA 1062717 : GATTAAGATAATACAAGGATACGTGGATCGATATAAACGATTTTTCGGAACAATAG : 1062661 135 : leValCysValTyrLeuThrAlaIleAlaPheIleIleGlyProValPheLeuSer : 152 !:!! ! ! :!!|||!.!|||.!!|||! !:!:!.!|||:!!|||! ! ! laMetGlyTyrValMetThrGlyIleThrPheSerLeuAlaProLeuPheSerVal 1062660 : CAATGGGATACGTAATGACTGGAATCACGTTCAGTTTGGCGCCTCTGTTTTCCGTA : 1062607 153 : ThrSerPheProAlaAspAlaGluTyrProPheGlnIleAsnTyrThrProValLy : 171 !..!!!.|||||||||!.! ! !||||||...|||!!. ! !||| ! GlnGluLeuProAlaAspGlyTrpIleProPheSerIleLysProLeuGlyValTy 1062606 : CAAGAATTGCCAGCAGACGGATGGATCCCGTTTTCCATTAAACCACTGGGAGTATA : 1062550 172 : sValIleIleTyrLeuGlnGlnSerLeuValAlaPheGlnCysThrGlyHisValC : 190 !:!!:!!|||!!! !||| !! ! ! !.!!||| .!! ! !:!! rCysLeuValTyrPheValGlnValTyrCysIleLeuGlnThrAlaPheCysIleS 1062549 : TTGCCTCGTATACTTTGTGCAGGTTTACTGCATTCTCCAAACAGCGTTCTGCATTA : 1062493 191 : ysIleSerIlePheGlyAlaLeuLeuLeuTrpIleThrAlaAlaArgPheGluCys : 208 !!:!:..!.!!.!. !|||||||||:!! ! .!!:!!||||||!:!!!.!!: erValAspPheMetIleAlaLeuLeuIleSerPheSerAlaAlaLysLeuAspIle 1062492 : GCGTGGATTTCATGATCGCTCTTCTAATCAGCTTCTCCGCGGCTAAATTAGACATA : 1062439 209 : LeuAlaValGluLeuGlnLysIleThrAsnIleSerMetLeuIleAlaCysValLy : 227 |||!.!:!!:!!|||!:!||| !.!..! !..!:!!|||:!!::!|||||||| LeuGlyMetLysLeuArgLysAlaAsnGlyHisAspValLeuValSerCysValLy 1062438 : CTGGGGATGAAACTGCGAAAAGCGAATGGCCACGACGTGCTGGTAAGCTGTGTCAA : 1062382 228 : sLysGlnLeuHisIle : 232 |:!!!!.! !.!.||| sGluHisGlnGluIle 1062381 : AGAACACCAAGAGATA : 1062365 vulgar: AfOr151_1 96 232 . KQ414618.1 1062772 1062364 - 165 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1062365 1062772 165 - . gene_id 5 ; sequence AfOr151_1 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1062365 1062772 . - . KQ414618.1 exonerate:protein2genome:local exon 1062365 1062772 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1062365 1062772 165 - . alignment_id 5 ; Query AfOr151_1 ; Align 1062773 97 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr154/155P Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 987 Query range: 0 -> 374 Target range: 1053857 -> 1051850 1 : MetSerLysArgMetThrProGluThrValIleArgIleAlaTrpLeuSerValVa : 19 |||! !|||!:!:!!|||||||||! !|||||| !||| !|||!!!||||||!. MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : lIleThrValCysTrpProLeuProMetGlySerGlyArgGlyArgIleLeuGlyP : 38 !:!:.!!||||||||||||||| !!! ..!:!!.!!!:!!.!!:!:!!:::...| aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 39 : heLysIleLeuGlnIleValSerIleIleSerAspPheMetLeuLeuPheProMet : 56 ||||||||||||||||| ||| ||||||! .!!!!:||||||!!.|||:!! heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 57 : IleTyrSerIleTyrLeuHisPheAspAspIleIleValSerSerGlnCysValCy : 75 :!:||||||! !||||||||||||||||||:!!|||||| !|||||| !!:!!|| LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 76 : sMetSerIleAlaLeuThrGlnLeuIleIleGlnThrPheIleCysPheValAsnH : 94 |:!!|||!!:!.!:!! !|||:!!|||!!:|||||| !!|||||||||..!|||: sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCysPheThrAsnT 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGTTTCACCAACT : 1053578 95 : isAspSerLeuGln >>>> Target Intron 1 >>>> ArgValIleGluG : 103 !!||| !|||||| 613 bp |||:!!||| !| yrAspLeuLeuGln++ ++ArgIleIleThrG 1053577 : ACGACCTTCTGCAGgt.........................agCGAATAATTACAG : 1052938 104 : luMetMetThrCysValLysGluAlaAsnGlnGlnGluThrGluIlePheTyrLys : 121 |||||!!:|||! !||||||||||||.!.||| |||! !||||||.!!:!!!!. luMetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLeuHisAsn 1052937 : AAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCACAAC : 1052884 122 : TyrIleGluLysCysGlyArgPheCysGlyGlySerIleAlaTrpMetTyrAlaTh : 140 ||||||:!!|||||| !! !|||! !|||||||||:!! !|||! ||| ! TyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrTyrLeuCy 1052883 : TATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACATACCTCTG : 1052827 141 : rAlaIleCysPheSerLeuGlyProValValLeuProIleThrPheProSerLysA : 159 !|||! !|||||| !|||||||||||||||||||||! ! !!|||||||||!..| sAlaThrCysPheValLeuGlyProValValLeuProAsnProPheProSerSerA 1052826 : TGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGCAGTG : 1052770 160 : laGluTyrProPheArgValAsnTyrValProValAsnValIleValTyrMetHis : 177 ||||||||||||||||||||||| !..!|||:!!|||!.!|||||||||:!!||| laGluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyrLeuHis 1052769 : CAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTACCTGCAC : 1052716 178 : GlnAlaPheLeuSerPheGlnGlyAlaAlaHisIleCysLeuSerMetMetGlyAl : 196 |||:!!|||:!!||||||||| !::!||||||||||||:!!|||!!:.!.||||| GlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePheGlyAl 1052715 : CAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTTCGGAGC : 1052659 197 : aLeuLeuLeuTrpPheAlaAlaAlaArgPheGluCysUnkAlaValGluLeuGlnA : 215 |||||||||||||.!!.!!||||||||||||.!.||| .!!:!!|||:!!|||. aLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluValGlnG 1052658 : TCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTTCAAC : 1052602 216 : snCysAlaAsnMetProThrLeuIleValCysValLysLysGlnLeuArgLeuArg : 233 !. !!:!!!:!!!:! !! !||||||:!!||||||||||||||||||! !|||||| lnSerSerSerIleHisMetLeuIleIleCysValLysLysGlnLeuLeuLeuArg 1052601 : AAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCTACTACTGAGG : 1052548 234 : ArgTyrAlaGluGlnValIleAspAsnPheArgPheIleVal-----LeuTyrAla : 250 |||! !|||... !|||||||||#####|||!:!||| Arg******GluAspPheAlaIleTyrAspTyrPheIleVal#####LeuPheAla 1052547 : AGGTGATAAGaagattttgcaatttatgatTACTTTATCGTAACTGATTGTTTGCC : 1052492 251 : IleAlaValSerThrPheAlaLeuThrLeuCysGlyIleIleLeuIleIleAsnVa : 269 ||| ! !!!!! ! ! ! !..!:!! !|||.!! ||||||:!! ! IleIlePheArgTyrAlaLysGluValValAspGlyPheArgLeuIleValLeuAs 1052491 : ATAATTTTTAGGTACGCCAAAGAAGTGGTTGACGGTTTTCGGCTTATAGTACTCAA : 1052435 270 : lProIleLeuValLysMetGlnPheIleThrLeu{C} >>>> Target Intro : 281 ! !!||| !:!!!..!!: ! !:!!||||||{ } 122 bp nAlaIleAlaMetSerIleLeuAlaLeuThrLeu{S}++ 1052434 : CGCTATAGCAATGAGCATTTTGGCTCTTACTCTA{A}gt................. : 1052396 282 : n 2 >>>> {ys}PheThrValLeuThrGluIleTyrLeuTyrAlaTrpProAla : 295 {!!}||||||||||||.!!|||||||||:!!||||||||| !!||| +-{er}PheThrValLeuAlaGluIleTyrMetTyrAlaTrpSerAla 1052395 : ........aa{GC}TTCACTGTACTCGCAGAAATTTATATGTACGCATGGTCAGCT : 1052235 296 : AspTyrIleAsnAspMet >>>> Target Intron 3 >>>> SerMetAsn : 304 ||||||!!:!!.|||||| 80 bp ||| !!. AspTyrMetLysAspMet++ ++SerAlaLys 1052234 : GACTACATGAAAGACATGgt.........................agAGTGCAAAG : 1052128 305 : IleSerGlnSerAlaTyrAsnSerValTrpTyrGluGlnThrIleGluLeuGlnAr : 323 :!!|||||||||!.!|||:!!! !..!||||||! !||||||:::|||:::|||:: ValSerGlnSerValTyrAspLeuThrTrpTyrGlyGlnThrLeuGluMetGlnLy 1052127 : GTTTCACAAAGTGTGTATGATTTAACGTGGTACGGACAAACATtggaaatgcagaa : 1052071 324 : gAsnLeuLeuSerValIleThrTyrGlnLysProLeuIleLeuSerIleLysCysI : 342 :|||:::||| ::::::..!:!!|||:!!|||:!!|||||||||:!!!..|||| sAsnValLeuTyrIleLeuValHisGlnGluProValIleLeuSerValSerCysI 1052070 : aaatgtattatacatattgGTACACCAAGAACCGGTAATTCTGTCAGTTAGTTGCA : 1052014 343 : leLeuSerGluLeuSerLeuArgTyrTyrCysSer >>>> Target Intron : 354 ||:!! !!||||||||||||||||||||||||||| 65 bp leValProGluLeuSerLeuArgTyrTyrCysSer++ 1052013 : TCGTGCCGGAGCTTTCTCTTCGTTATTATTGCTCGgt................... : 1051976 355 : 4 >>>> TyrLeuSerAsnThrPheSerIlePheThrAlaLeuArgValLeuIle : 369 ||||||||||||.!!||||||:!!||||||||||||||||||:!!:!: ++TyrLeuSerAsnAlaPheSerValPheThrAlaLeuArgValValLeu 1051975 : ......agTACCTGTCAAATGCGTTCTCGGTTTTCACCGCTTTGCGCGTCGTGCTG : 1051868 370 : ValLysAsnSerSer : 374 ! ! !!!.|||:!! AspAlaLysSerAla 1051867 : GATGCAAAATCAGCC : 1051851 vulgar: AfOr154/155P 0 374 . KQ414618.1 1053857 1051850 - 987 M 98 294 5 0 2 I 0 609 3 0 2 M 149 447 F 0 5 M 33 99 S 0 1 5 0 2 I 0 118 3 0 2 S 1 2 M 20 60 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 61 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1051851 1053857 987 - . gene_id 1 ; sequence AfOr154/155P ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1053564 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053564 1053857 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1053562 1053563 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052951 1053563 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052951 1052952 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052399 1052950 . - . KQ414618.1 exonerate:protein2genome:local exon 1052399 1052950 . - . insertions 0 ; deletions 0 ; frameshifts 5 KQ414618.1 exonerate:protein2genome:local splice5 1052397 1052398 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052277 1052398 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1052277 1052278 . - . intron_id 1 ; splice_site "AA" KQ414618.1 exonerate:protein2genome:local cds 1052215 1052276 . - . KQ414618.1 exonerate:protein2genome:local exon 1052215 1052276 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052213 1052214 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052135 1052214 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1052135 1052136 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051979 1052134 . - . KQ414618.1 exonerate:protein2genome:local exon 1051979 1052134 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1051977 1051978 . - . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1051914 1051978 . - . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 1051914 1051915 . - . intron_id 3 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051851 1051913 . - . KQ414618.1 exonerate:protein2genome:local exon 1051851 1051913 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1051851 1053857 987 - . alignment_id 1 ; Query AfOr154/155P ; Align 1053858 1 294 ; Align 1052951 99 447 ; Align 1052499 248 99 ; Align 1052275 282 60 ; Align 1052135 302 156 ; Align 1051914 354 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr154/155P Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 310 Query range: 94 -> 234 Target range: 1029185 -> 1028765 95 : AspSerLeuGlnArgValIleGluGluMetMetThrCysValLysGluAlaAsnGl : 113 |||!!!||||||!:!:!!||||||||||||! !! !||| !:!! !|||!!.! AspThrLeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysPr 1029185 : GACACGTTGCAGAAACTAATCGAAGAAATGAAGATTTGCTGTGAAACAGCGAAACC : 1029131 114 : nGlnGluThrGluIlePheTyrLysTyrIleGluLysCysGlyArgPheCysGlyG : 132 ! ! |||! !!!::!!||| ! ::!|||:!!!!:|||! !..! !|||! !! ! oTyrGluArgAspValPheGlnArgTyrValAspLysTyrSerLeuPheTyrValT 1029130 : ATACGAAAGAGACGTCTTTCAACGATACGTCGATAAATACTCTTTATTTTACGTAA : 1029074 133 : lySerIleAlaTrpMetTyrAlaThrAlaIleCysPheSerLeuGlyProValVal : 150 !!!! :!!|||.!.||| !||||||:!! !.!. !|||||| ! !:!! hrCysSerSerTrpPheTyrLeuThrAlaValIleMetValLeuGlySerArgIle 1029073 : CATGTTCGTCGTGGTTTTACTTAACAGCAGTTATTATGGTTCTGGGAAGTCGGATT : 1029020 151 : LeuProIleThrPheProSerLysAlaGluTyrProPheArgValAsnTyrValPr : 169 :!! !! ! !!||||||!!!!!.|||! !|||||||||! !||||||!:!! !|| IleSerAspProPheProThrAsnAlaValTyrProPheProValAsnPheGluPr 1029019 : ATATCTGATCCTTTTCCAACCAACGCCGTATATCCATTCCCTGTTAACTTTGAACC : 1028963 170 : oValAsnValIleValTyrMetHisGlnAlaPheLeuSerPheGlnGlyAlaAlaH : 188 |:!!!.. !|||:!!!:!|||||||||:!!|||:!!.!!.!.||| !!||||||| oLeuArgSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaH 1028962 : CTTGAGAAGTATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCAC : 1028906 189 : isIleCysLeuSerMetMetGlyAlaLeuLeuLeuTrpPheAlaAlaAlaArgPhe : 206 ||! ! !!:!!!:!:!!:!: !|||||||||||| |||||||||||||||||| isThrSerMetAsnValLeuThrAlaLeuLeuLeuLeuPheAlaAlaAlaArgPhe 1028905 : ACACTAGTATGAATGTGCTAACTGCATTGTTATTACTATTTGCTGCAGCTCGTTTC : 1028852 207 : GluCysUnkAlaValGluLeuGlnAsnCysAlaAsnMetProThrLeuIleValCy : 225 ||| !:!!||||||::!||| !::!:!!!!: !||||||||| !|| GluIleLeuMetMetGluLeuArgAsnValSerAspIleGluThrLeuIleLysCy 1028851 : GAGATACTGATGATGGAGCTGAGGAATGTCAGTGACATTGAAACACTGATTAAATG : 1028795 226 : sValLysLysGlnLeuArgLeuArgArg : 234 |:!!|||||| ! ! !! !:!!|||||| sMetLysLysTyrSerIleValArgArg 1028794 : TATGAAAAAGTATTCGATCGTACGGAGG : 1028766 vulgar: AfOr154/155P 94 234 . KQ414618.1 1029185 1028765 - 310 M 140 420 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028766 1029185 310 - . gene_id 2 ; sequence AfOr154/155P ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028766 1029185 . - . KQ414618.1 exonerate:protein2genome:local exon 1028766 1029185 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028766 1029185 310 - . alignment_id 2 ; Query AfOr154/155P ; Align 1029186 95 420 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr154/155P Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 210 Query range: 68 -> 234 Target range: 1058230 -> 1057732 69 : ValSerSerGlnCysValCysMetSerIleAlaLeuThrGlnLeuIleIleGlnTh : 87 :!! !!.!!:!!! ..! !!:||||||! ! ! !! ||| ||| IleProGlyLysSerThrValIleSerIleGluThrPheLeuLeuAsnIleLeuIl 1058230 : ATTCCAGGTAAGTCGACCGTGATTTCGATAGAAACATTTCtgttaaacattttaat : 1058176 88 : rPheIleCysPheValAsnHisAspSerLeuGlnArgValIleGluGluMetMetT : 106 :!:! |||!!.:!!:!!:!!! !||| !:!! ! !!:||| !! eGluLeuSerProValLysAsnAsnAlaSerGlnValLeuTyrPheAspMetGluA 1058175 : tgaacTGTCACCGGTGAAAAACAATGCTTCGCAGGTATTGTACTTCGACATGGAGA : 1058119 107 : hrCysValLysGluAlaAsnGlnGlnGluThrGluIlePheTyrLysTyrIleGlu : 124 .!! ! !!:! ! |||!.!...:::||| :::.!. ! ::!|||:!:!!: snPheCysArgTyrAlaThrSerLysGluLysValValLeuGlnArgTyrValAsp 1058118 : ATTTCTGCAGATACGCCACCtcgaaggaaaaagttgtcCTGCAACGATACGTGGAC : 1058065 125 : LysCysGlyArgPheCysGlyGlySerIleAlaTrpMetTyrAlaThrAlaIleCy : 143 !:!! ! ! !||| !||| !! !||| !||| !:! !|||.!!|||! ArgTyrLysTyrPheHisGlyIleTyrIleLeuTrpCysPheLeuThrThrIlePh 1058064 : AGATACAAATACTTTCATGGGATTTATATATTATGGTGCTTCCTCACGACCATCTT : 1058008 144 : sPheSerLeuGlyProValValLeuProIleThrPheProSerLysAlaGluTyrP : 162 ! !!! ! !||||||:!! !! !||| |||||||||!!! ! ||| !|||| eValIleSerGlyProLeuTyrSerProGlnThrPheProThrHisAlaIleTyrP 1058007 : CGTCATAAGTGGTCCATTGTACTCACCACAGACGTTCCCCACTCATGCGATATATC : 1057951 163 : roPheArgValAsnTyrValProValAsnValIleValTyrMetHisGlnAlaPhe : 180 |||||!:!|||.!.:!!..!! ! !!!..:::::::::|||...||||||:!!!!. roPheGlnValGluHisThrLeuPheLysIleValIleTyrPheHisGlnSerLeu 1057950 : CTTTCCAAGTGGAACATACACTGTTCAagattgttatttatttccatCAGTCGTTA : 1057897 181 : LeuSerPheGlnGlyAlaAlaHisIleCysLeuSerMetMetGlyAlaLeuLeuLe : 199 :!!.!!||||||!.!:!!||| !!!:..!:!!..!! ... !||||||||||| ValGlyPheGlnAlaSerAlaGlyMetAlaIleAspThrGlnIleAlaLeuLeuLe 1057896 : GTTGGTTTTCAGGCGTCCGCTGGTATGGCCATCGACACTCAAATTGCTCTTCTTCT : 1057840 200 : uTrpPheAlaAlaAlaArgPheGluCysUnkAlaValGluLeuGlnAsnCysAlaA : 218 | ! !:!|||||||||||||||||| !.! !|||:!!!:!|||... !! uArgTyrAlaAlaAlaArgPheGluLeuLeuGlyAsnGluMetArgAsnAlaAsnT 1057839 : GCGATACGCGGCTGCCAGGTTCGAGCTATTGGGAAACGAGATGCGAAATGCAAATA : 1057783 219 : snMetProThrLeuIleValCysValLysLysGlnLeuArgLeuArgArg : 234 .! ! !!!!! !!.!|||:!!:!!|||!!. !..!|||! !||| hrHisCysGluPheAsnAlaCysIleGluLysHisSerGluLeuLeuArg 1057782 : CTCACTGTGAATTCAATGCCTGCATAGAGAAGCACAGTGAACTTCTCAGg : 1057733 vulgar: AfOr154/155P 68 234 . KQ414618.1 1058230 1057732 - 210 M 166 498 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057733 1058230 210 - . gene_id 3 ; sequence AfOr154/155P ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1057733 1058230 . - . KQ414618.1 exonerate:protein2genome:local exon 1057733 1058230 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057733 1058230 210 - . alignment_id 3 ; Query AfOr154/155P ; Align 1058231 69 498 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr141P Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 366 -> 419 Target range: 1395323 -> 1395482 367 : SerValAspIleSerArgAlaThrTyrSerMetProTrpTyrArgTyrSerTyrAs : 385 |||:!!...||||||!.!|||.!!|||||| |||||||||! ! ..! !.! SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 386 : nLeuGlnLysIleThrAsnIleLeuMetValArgSerGlnLysAlaValArgLeuT : 404 . !::! ! |||! !! !:!!||||||:!!|||||||||!:! !:!!! !:!!| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 405 : hrAlaGlyLysPheIleGlyLeuSerLeuGluThrPheAlaSerMet : 419 ||||||||||||||!!:! !|||||||||||| !||||||!:!:!: hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnVal 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTA : 1395482 vulgar: AfOr141P 366 419 . KQ414716.1 1395323 1395482 + 126 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395482 126 + . gene_id 1 ; sequence AfOr141P ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395482 126 + . alignment_id 1 ; Query AfOr141P ; Align 1395324 367 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr141P Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 366 -> 419 Target range: 1387619 -> 1387778 367 : SerValAspIleSerArgAlaThrTyrSerMetProTrpTyrArgTyrSerTyrAs : 385 ||| ! !|||!!!!:!:!:...|||:::... |||||| ! !.! !.. SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 386 : nLeuGlnLysIleThrAsnIleLeuMetValArgSerGlnLysAlaValArgLeuT : 404 . ! :::|||... ::::::::::::||||||||||||! !:!!! !|||| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 405 : hrAlaGlyLysPheIleGlyLeuSerLeuGluThrPheAlaSerMet : 419 ||||||||||||||:!:..!|||||||||! .!!||||||!::::: hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: AfOr141P 366 419 . KQ414716.1 1387619 1387778 + 101 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387778 101 + . gene_id 2 ; sequence AfOr141P ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387778 101 + . alignment_id 2 ; Query AfOr141P ; Align 1387620 367 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr163_1 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 929 Query range: 0 -> 383 Target range: 1385619 -> 1387946 1 : MetMetLeuLysThrIleIleThrCysProIleGluValCysLeuArgLeuIleGl : 19 |||! ! !! !|||||||||!.! !!|||:!:||| ! !!|||||||||.!!|| MetThrSerThrThrIleIleAsnArgProLeuGluTyrSerLeuArgLeuPheGl 1385620 : ATGACTTCGACGACTATAATTAATCGTCCATTGGAATATAGCCTCCGTCTATTTGG : 1385674 20 : yValTrpProTyrSerSerTyrArgIleValGlnArgValPheTrpThrIleIleM : 38 |!.!|||||| !!||||||||| !.!!:!!:!!!!!:!!.!!|||:!!! |||| yAlaTrpProAspSerSerTyrSerPheLeuLysSerIleIleTrpSerThrIleM 1385675 : CGCCTGGCCAGATTCTTCCTATTCATTTCTGAAAAGTATTATTTGGTCGACGATAA : 1385731 39 : etGlyAsnSerThrValPheGlnLeuTrpTyrCysIleSerTyrPheLysThrAla : 56 ||!.!!.. :::|||||| !||||||||||||!!!:!!.!!!:!:!!... etAlaThrPheLeuMetPheGlnTyrTrpTyrCysIleThrHisIleArgSerGly 1385732 : TGGCAAcgtttttaatgtttcaataTTGGTATTGTATTACTCATATTAGATCAggt : 1385785 57 : AspLeuLeuAspLeuLeuAspGlyIleThrLeuThrLeuSerAsnThrValLeuPh : 75 |||:::|||||||||||||||:!:!:!:!!||||||||||||:!!:!!:!!|| ---LeuIleAspLeuLeuAspGlyLeuSerIleThrLeuSerAsnSerLeuValPh 1385786 : ---ttaattgatttattgGACGGATTGAGTATTACTTTATCAAATTCACTCGTCTT : 1385839 76 : ePheLysLeuIleIleLeuTrpPheAsnTyr{Ar} >>>> Target Intron : 86 |.!!||||||||||||:!!|||.!!:!! !{||} 486 bp eLeuLysLeuIleIleIleTrpLeuHisSer{Ar}++ 1385840 : TCTCAAATTGATTATTATTTGGCTTCATAGT{CG}gt................... : 1385876 87 : 1 >>>> {g}IlePheHisAsnIleLeuThrIleValPheGluAspTrpAsnAsn : 101 {|}! !|||:!!..!|||||||||! !||||||||||||!! |||||| ++{g}ThrPheTyrGlyIleLeuThrThrValPheGluAspCysAsnAsn 1385877 : ......ag{A}ACATTTTATGGCATTCTGACAACCGTATTCGAGGACTGCAATAAT : 1386403 102 : ArgAlaLeuThrAspGlnLysLysGlnLeuMetValGluAsnThrHisLeuSerSe : 120 !|||! !||| :::...|||::::::|||..!!!:!!..!! |||||||| TyrAlaSerThrValGluAsnLysArgIleMetThrAspLysAlaMetLeuSerSe 1386404 : TATGCTTCTAccgttgaaaataaacgaataatgACAGATAAAGCTATGTTGTCTTC : 1386460 121 : rArgIleSerAsnPheLeuPheGlyIleTyrSerValThrSerIleLeuTyrSerA : 139 |||||||||||||||||||...||| !!:!|||:!!|||! !:!!:!!|||||| rArgIleSerAsnPheLeuIleGlyTyrPheSerIleThrPheLeuValTyrSer- 1386461 : TCGtatctcaaattttttaattggctATTTTTCGATCACGTTCCTTGTATATTCA- : 1386517 140 : laSerIleAlaLeuIleSerAspAspIleAspAsnThrAsnAsnGluLeuIleLeu : 157 .!!:!!||||||:!!! ! !||| !||| .!.|||! !! !:!!! ! --GlyLeuAlaLeuValLeuPheAspGluAsp------GlnAsnGlyProValSer 1386518 : --GGACTTGCTCTAGTATTATTTGATGAAGAT------CAGAATGGACCGGTTTCC : 1386562 158 : AsnLysLysLysLeuLeuLeuLysMetLysLeuProPheAspPheThrIlePhePr : 176 !..::::::|||...|||::::::|||:!!!!!||||||!!: !|||:!!! !|| LysGlnArgLysPheLeuIleArgMetGluPheProPheGluAlaThrValSerPr 1386563 : AaacaaaggaaatttttaattagaatggAATTTCCTTTCGAAGCTACAGTCTCTCC : 1386619 177 : oLeuTyrGluPheValIleValAlaGlnPheValPheGluCysPheValAlaLeuM : 195 |! ||||||...::::::|||...||||||:::||||||...|||:!!!.!! ! oArgTyrGluIleIleLeuValValGlnPheIlePheGluAlaPheIleValTyrG 1386620 : ACgttatgaaattattctagttgtacaatttatattcgaagcATTTATAGTTTATG : 1386676 196 : etAlaGlyMetLeuMetAlaPheSerAlaAlaLeu >>>> Target Intron : 207 |||!.!! ! !!!:|||.!.! !|||!.!||| 399 bp lyAlaAlaThrSerIleAlaLeuIleAlaValLeu++ 1386677 : GAGCAGCTACATCGATAGCCCTAATTGCAGTACTAgt................... : 1386714 208 : 2 >>>> ValLeuHisIleGlySerGlnIleAspIleIleCysGlnGluLeuIle : 222 :!!||||||:!!|||.!!|||||||||:!!:!:||||||.!.:!!! ! ++IleLeuHisValGlyGlyGlnIleAspLeuLeuCysGlnAsnMetArg 1386715 : ......agATATTACATGTTGGTGGTCAGATCGATTTATTGTGTCAAAACATGAGA : 1387156 223 : GluIleProArgHisTyrLysGlyLysThrSerTyrMetLeu<-><->LysAsnIl : 239 !!:||| !!|||:!!:!!:!! !|||..! !! ! ! ||| |||:!!:! AspIleSerArgAsnHisGluLysLysValProGlnLysLeuThrIleLysAspVa 1387157 : GACATTTCTCGTAATCATGAGAAGAAAGTACCGCAAAAACTGACAATAAAGGATGT : 1387213 240 : eIleIleLysHisGlnArgIleLeuArgLeuSerGluAsnIleLysHisLeuPheL : 258 !:!!:!!!:!||||||||||||:!!|||||||||:!!||||||:!! :!!||| lValValArgHisGlnArgIleIleArgLeuSerLysAsnIleGluThrValPheT 1387214 : CGTTGTTAGGCATCAACGAATTATACGACTGTCTAAAAATATCGAGACAGTTTTTA : 1387270 259 : euTyrThrSerLeuIleGlnPheLeuSerAsnIleLeuValIleCysPheLeuGly : 276 !|||! !|||||| |||||||||||||||:::|||||||||||||||:!!.!! hrTyrIleSerLeuCysGlnPheLeuSerAsnMetLeuValIleCysPheIleSer 1387271 : CTTATATATCATTATgccaatttttatcgaatatgcTGGTTATCTGTTTCATAAGC : 1387324 277 : PheIleLeuValAsn >>>> Target Intron 3 >>>> AlaLeuGlyThr : 285 |||:!!||||||!.! 85 bp :!!|||..!||| PheValLeuValThr++ ++SerLeuAsnThr 1387325 : TTCGTTTTGGTAACCgt.........................agTCCTTGAACACG : 1387436 286 : GluGlnGlySerThrIlePheIleLysCysPheProTyrTyrIleAlaAlaAsnCy : 304 |||||| !!!! !:!!.!.:!:||||||||||||||||||:!!|||!.!||||| GluGlnThrThrGlyLeuIleLeuLysCysPheProTyrTyrValAlaValAsnCy 1387437 : GAACAGACAACTGGATTAATACTGAAATGTTTTCCCTATTACGTTGCTGTTAATTG : 1387493 305 : sGluAlaPheIleLeuCysTyrThrGlyGluTyrLeuMetPheLys >>>> Tar : 320 |||||||||||||||||||||||||||||||||||||! ! !||| sGluAlaPheIleLeuCysTyrThrGlyGluTyrLeuThrSerLys++ 1387494 : TGAAGCATTCATTTTATGTTATACCGGAGAATATCTAACCTCTAAGgt........ : 1387543 321 : get Intron 4 >>>> AsnGluSerIleValHisAlaAlaTyrAsnThrLeuT : 332 79 bp :::||| !!|||..!!!.:!:...|||||| |||| ++SerGluArgIleThrGlnSerValTyrAsnPheLeuT 1387544 : .................agagtgAACGTATTACACAATCtgtgtacaattttcttt : 1387656 333 : rpTyrAsnLeuAsnProArgAspSerArgIleValLeuLeuIleLeuIleGlnAla : 350 |||||:!!|||!!.||||||!!::!!||||||||||||||||||::::::::::!! rpTyrAspLeuLysProArgGluAlaArgIleValLeuLeuIleIleLeuArgSer 1387657 : ggTACGATCTAAAACCTCGAGAAGCTCgtattgtattattaataatattacgaTCT : 1387710 351 : GlnArgLysLeuIleLeuSerAlaGlyAsnPheValThrLeuSerValGlnThrPh : 369 |||!:!:!!|||||||||!!!||||||!!.||||||!.!||||||:!! .!!|| GlnLysGluLeuIleLeuThrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPh 1387711 : CAGAAAGAGTTAATACTCACTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATT : 1387767 370 : eAlaSer >>>> Target Intron 5 >>>> MetGlnLysValSerAlaSe : 378 ||||!:: 135 bp |||! !|||!.!|||||||| eAlaAsn++ ++MetLeuLysAlaSerAlaSe 1387768 : TGCTAAtgt.........................agatgCTAAAAGCTTCAGCCTC : 1387929 379 : rTyrIleSerIleLeu : 383 ||||:!!|||:!!||| rTyrValSerValLeu 1387930 : GTACGTATCTGTTTTG : 1387946 vulgar: AfOr163_1 0 383 . KQ414716.1 1385619 1387946 + 929 M 56 168 G 1 0 M 28 84 S 0 2 5 0 2 I 0 482 3 0 2 S 1 1 M 52 156 G 1 0 M 10 30 G 2 0 M 55 165 5 0 2 I 0 395 3 0 2 M 30 90 G 0 6 M 45 135 5 0 2 I 0 81 3 0 2 M 38 114 5 0 2 I 0 75 3 0 2 M 52 156 5 0 2 I 0 131 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1385620 1387946 929 + . gene_id 1 ; sequence AfOr163_1 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1385620 1385873 . + . KQ414716.1 exonerate:protein2genome:local exon 1385620 1385873 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local splice5 1385874 1385875 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1385874 1386359 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1386358 1386359 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1386360 1386711 . + . KQ414716.1 exonerate:protein2genome:local exon 1386360 1386711 . + . insertions 0 ; deletions 3 KQ414716.1 exonerate:protein2genome:local splice5 1386712 1386713 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1386712 1387110 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1387109 1387110 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387111 1387341 . + . KQ414716.1 exonerate:protein2genome:local exon 1387111 1387341 . + . insertions 6 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387342 1387343 . + . intron_id 3 ; splice_site "Gt" KQ414716.1 exonerate:protein2genome:local intron 1387342 1387426 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1387425 1387426 . + . intron_id 2 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387427 1387540 . + . KQ414716.1 exonerate:protein2genome:local exon 1387427 1387540 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387541 1387542 . + . intron_id 4 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387541 1387619 . + . intron_id 4 KQ414716.1 exonerate:protein2genome:local splice3 1387618 1387619 . + . intron_id 3 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 5 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 5 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 4 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387946 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387946 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1385620 1387946 929 + . alignment_id 1 ; Query AfOr163_1 ; Align 1385620 1 168 ; Align 1385788 58 84 ; Align 1386361 87 156 ; Align 1386517 140 30 ; Align 1386547 152 165 ; Align 1387111 207 90 ; Align 1387207 237 135 ; Align 1387427 282 114 ; Align 1387620 320 156 ; Align 1387911 372 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr163_1 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 6 -> 82 Target range: 1390541 -> 1390769 7 : IleThrCysProIleGluValCysLeuArgLeuIleGlyValTrpProTyrSerSe : 25 |||!:! !!|||:!:|||:!! !!|||||||||! !|||:!!|||||| !||||| IleSerArgProValGluIleGlyLeuArgLeuThrGlyIleTrpProGlySerSe 1390542 : ATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGGAATTTGGCCAGGTTCATC : 1390596 26 : rTyrArgIleValGlnArgValPheTrpThrIleIleMetGlyAsnSerThrValP : 44 ||||..!|||:!! |||||| !|||! !|||:!!||| ! ! ! !:!!| rTyrGluIleIleValArgValThrTrpIleIleLeuMetThrValValGlnIleP 1390597 : TTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTATGACAGTTGTACAAATAT : 1390653 45 : heGlnLeuTrpTyrCysIleSerTyrPheLysThrAlaAspLeuLeuAspLeuLeu : 62 |||||! ! ! ||| |||!.!:!!.!! ! !::!:!!||| !:!!|||:!! heGlnTyrArgTyrIleIleLysHisLeuAspGlySerAsnLeuAlaAsnLeuIle 1390654 : TCCAATATCGATATATAATAAAGCATCTCGATGGTAGTAATCTGGCGAACTTAATA : 1390707 63 : AspGlyIleThrLeuThrLeuSerAsnThrValLeuPhePheLysLeuIleIleLe : 81 |||.!!:!! ! !|||||| !! !!!:!:!!|||!:! ||||||||||||.. AspSerValGlyThrThrLeuProTyrSerLeuLeuTyrValLysLeuIleIlePh 1390708 : GACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTATgtcaaattaattatttt : 1390764 82 : uTrp : 82 .||| eTrp 1390765 : ctgg : 1390769 vulgar: AfOr163_1 6 82 . KQ414716.1 1390541 1390769 + 172 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390542 1390769 172 + . gene_id 2 ; sequence AfOr163_1 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1390542 1390769 . + . KQ414716.1 exonerate:protein2genome:local exon 1390542 1390769 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390542 1390769 172 + . alignment_id 2 ; Query AfOr163_1 ; Align 1390542 7 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr163_1 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 206 -> 279 Target range: 1408216 -> 1408423 207 : ValLeuHisIleGlySerGlnIleAspIleIleCysGlnGluLeuIleGluIlePr : 225 |||||||||:!!|||!!!||||||||||||!!:|||||| !|||! |||:!!|| ValLeuHisLeuGlyCysGlnIleAspIleMetCysGlnThrLeuLysGluValPr 1408217 : GTGCTTCATCTAGGTTGTCAAATCGATATTATGTGCCAGACATTAAAGGAGGTTCC : 1408271 226 : oArgHisTyrLysGlyLysThrSerTyrMetLeuLysAsnIleIleIleLysHisG : 244 | ||||||..!|||||| ...|||!:! !.!!|||! !!:!|||| o------TyrLysAsnLysThr------GlnLeuArgPhePheIleSerArgHisG 1408272 : T------TATAAGAATAAAACT------CAACTGAGATTCTTCATCAGCAGACATC : 1408316 245 : lnArgIleLeuArgLeuSerGluAsnIleLysHisLeuPheLeuTyrThrSerLeu : 262 ||!:!|||:!!! !!!!:!!|||!..|||:!! ! |||||| !||| !:!!||| lnGlnIleIleIlePheAlaGluArgIleGluLysLeuPheThrTyrLeuAlaLeu 1408317 : AACAGATCATCATATTTGCAGAGAGAATAGAAAAACTGTTTACGTATCTAGCACTT : 1408370 263 : IleGlnPheLeuSerAsnIleLeuValIleCysPheLeuGlyPheIleLeu : 279 ! !|||.!!|||||||||! !|||:!!! !|||! !:!!|||!:!|||:!! SerGlnLeuLeuSerAsnThrLeuIleThrCysCysValGlyTyrIleIle 1408371 : AGTCAACTTCTCTCGAATACCCTAATTACTTGCTGCGTGGGTTATATTATC : 1408423 vulgar: AfOr163_1 206 279 . KQ414716.1 1408216 1408423 + 141 M 19 57 G 2 0 M 5 15 G 2 0 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408217 1408423 141 + . gene_id 3 ; sequence AfOr163_1 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1408217 1408423 . + . KQ414716.1 exonerate:protein2genome:local exon 1408217 1408423 . + . insertions 0 ; deletions 4 KQ414716.1 exonerate:protein2genome:local similarity 1408217 1408423 141 + . alignment_id 3 ; Query AfOr163_1 ; Align 1408217 207 57 ; Align 1408274 228 15 ; Align 1408289 235 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr163_1 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 206 -> 280 Target range: 1401021 -> 1401231 207 : ValLeuHisIleGlySerGlnIleAspIleIleCysGlnGluLeuIleGluIlePr : 225 |||||||||:!!|||!!!||||||||||||!!:|||!:!.!.|||:!!!!::!! ValLeuHisLeuGlyCysGlnIleAspIleMetCysArgAsnLeuLeuAspVal-- 1401022 : GTACTTCATCTAGGATGTCAAATCGACATCATGTGCCGAAATTTGCTAGACGTT-- : 1401076 226 : oArgHisTyrLysGlyLysThrSerTyrMetLeuLysAsnIleIleIleLysHisG : 244 ... !||| !... ...:::||| ...||| !!:!|||| ----------SerPheLysAspGlyLysGlnIleLysPhePheIleAsnArgHisG 1401077 : ----------TCCTTCAAAGACggaaaacaaataaaattcttcattaACAGACATC : 1401121 245 : lnArgIleLeuArgLeuSerGluAsnIleLysHisLeuPheLeuTyrThrSerLeu : 262 ||..!|||:!! !!!!:!!|||!..|||:!! ! |||||| !|||! !:!!||| lnGluIleIleValPheAlaGluArgIleGluLysLeuPheThrTyrMetAlaLeu 1401122 : AGGAAATTATTGTTTTTGCAGAAAGAATTGAGAAACTTTTTACATACATGGCTCTC : 1401175 263 : IleGlnPheLeuSerAsnIleLeuValIleCysPheLeuGlyPheIleLeuVal : 280 ! !|||.!!:!!||||||! :!!:!!||||||! !:!!||||||:!!:!!||| SerGlnLeuValSerAsnThrIleIleIleCysCysValGlyPheLeuValVal 1401176 : AGTCAACTTGTGTCCAATACGATAATTATATGTTGCGTAGGATTTCTCGTTGTA : 1401231 vulgar: AfOr163_1 206 280 . KQ414716.1 1401021 1401231 + 123 M 18 54 G 4 0 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401022 1401231 123 + . gene_id 4 ; sequence AfOr163_1 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1401022 1401231 . + . KQ414716.1 exonerate:protein2genome:local exon 1401022 1401231 . + . insertions 0 ; deletions 4 KQ414716.1 exonerate:protein2genome:local similarity 1401022 1401231 123 + . alignment_id 4 ; Query AfOr163_1 ; Align 1401022 207 54 ; Align 1401076 229 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr163_1 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 14 -> 82 Target range: 1405116 -> 1405320 15 : LeuArgLeuIleGlyValTrpProTyrSerSerTyrArgIleValGlnArgValPh : 33 ||||||! ! !!.! !|||||| !!! !!! |||:::...::: || LeuArgTyrAlaAlaSerTrpProGlyThrProSerLeuIleLeuHisLysPhePh 1405117 : CTCCGTTATGCTGCCTCTTGGCCAGGAACACCATCGTtgattttacataaattttt : 1405171 34 : eTrpThrIleIleMetGlyAsnSerThrValPheGlnLeuTrpTyrCysIleSerT : 52 ||||||||||:!!||| !!... ! !:!!!:!|||! ! ! ||| |||!!!: eTrpThrIleValMetCysGlyLeuGlnIleTyrGlnTyrGlyTyrValIleArgH 1405172 : ttggaCAATTGTCATGTGTGGACTTCAAATTTATCAGTACGGCTACGTGATCAGGC : 1405228 53 : yrPheLysThrAlaAspLeuLeuAspLeuLeuAspGlyIleThrLeuThrLeuSer : 70 !!!:!||| ! ! !|||:!!||| !:!!|||..!:!:!:!:!! !:!! !! isTyrLysTyrAsnThrLeuValAspThrValAspAsnLeuSerIleCysMetPro 1405229 : ATTATAAATATAACACTCTTGTGGATACAGTAGATAATTTGAGCATTTGCATGCCA : 1405282 71 : AsnThrValLeuPhePheLysLeuIleIleLeuTrp : 82 !|||:!!:!!! !.!!||||||.!!:!! !||| PheThrLeuValCysIleLysLeuPheValAlaTrp 1405283 : TTCACTTTAGTGTGCATCAAATTATTTGTTGCTTGG : 1405320 vulgar: AfOr163_1 14 82 . KQ414716.1 1405116 1405320 + 118 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1405117 1405320 118 + . gene_id 5 ; sequence AfOr163_1 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1405117 1405320 . + . KQ414716.1 exonerate:protein2genome:local exon 1405117 1405320 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1405117 1405320 118 + . alignment_id 5 ; Query AfOr163_1 ; Align 1405117 15 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr163_1 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 206 -> 280 Target range: 1394161 -> 1394389 207 : ValLeuHisIleGlySerGlnIleAspIleIleCysGlnGluLeuIleGluIlePr : 225 :!!!!!|||||||||.!!||||||!!:!!::!: :!!! ||| ...||| IlePheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAsnIleSe 1394162 : ATATTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaatatttc : 1394216 226 : o<->ArgHisTyrLysGlyLysThrSer<->TyrMetLeuLysAsnIleIleIleL : 242 ::: !! ! ||| !!:! !||| !!! !|||::::!!||| !! rIleLysAspGluLysHisArgLeuSerArgAsnThrThrLysSerLeuIleHisA 1394217 : tattaaagATGAGAAACACAGATTATCGAGAAACACCACCAAATCATTAATTCACA : 1394273 243 : ysHisGlnArgIleLeuArgLeuSerGluAsnIleLysHisLeuPheLeuTyrThr : 260 :!|||!!.||||||:!!! ! !|||!!:::!|||:!! !||||||! !|||! ! rgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIle 1394274 : GACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACATT : 1394327 261 : SerLeuIleGlnPheLeuSerAsnIleLeuValIleCysPheLeuGlyPheIleLe : 279 :!!|||!!:|||!::|||!!!|||! ||||||||||||! !:!!||||||:!!:! AlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGlyPheLeuIl 1394328 : GCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGATTCTTAAT : 1394384 280 : uVal : 280 !||| eVal 1394385 : AGTA : 1394389 vulgar: AfOr163_1 206 280 . KQ414716.1 1394161 1394389 + 115 M 19 57 G 0 3 M 8 24 G 0 3 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394162 1394389 115 + . gene_id 6 ; sequence AfOr163_1 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1394162 1394389 . + . KQ414716.1 exonerate:protein2genome:local exon 1394162 1394389 . + . insertions 6 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394162 1394389 115 + . alignment_id 6 ; Query AfOr163_1 ; Align 1394162 207 57 ; Align 1394222 226 24 ; Align 1394249 234 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr165 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 678 Query range: 198 -> 376 Target range: 1401021 -> 1402808 199 : ValLeuHisIleGlyCysGlnIleAspIleLeuCysGlnAsnLeuLeuHisIleSe : 217 |||||||||:!!||||||||||||||||||:!!|||!:!||||||||| !!:!!|| ValLeuHisLeuGlyCysGlnIleAspIleMetCysArgAsnLeuLeuAspValSe 1401022 : GTACTTCATCTAGGATGTCAAATCGACATCATGTGCCGAAATTTGCTAGACGTTTC : 1401076 218 : rProHisIleCysAlaSerHisLeuLysPhePheIleIleArgTyrGlnGluIleI : 236 | !! ! !.........:::|||||||||||| !|||:!!|||||||||| r---PheLysAspGlyLysGlnIleLysPhePheIleAsnArgHisGlnGluIleI 1401077 : C---TTCAAAGACggaaaacaaataaaattcttcattaACAGACATCAGGAAATTA : 1401130 237 : leIlePheAlaGluArgValGluLysLeuPheThrTyrIleAlaLeuSerGlnLeu : 254 ||:!!||||||||||||:!!||||||||||||||||||!!:||||||||||||||| leValPheAlaGluArgIleGluLysLeuPheThrTyrMetAlaLeuSerGlnLeu 1401131 : TTGTTTTTGCAGAAAGAATTGAGAAACTTTTTACATACATGGCTCTCAGTCAACTT : 1401184 255 : ValSerAsnThrLeuIleThrCysCysValGlyPheLeuIleValIle >>>> T : 271 ||||||||||||:!!|||! !||||||||||||||||||:!!|||||| ValSerAsnThrIleIleIleCysCysValGlyPheLeuValValIle++ 1401185 : GTGTCCAATACGATAATTATATGTTGCGTAGGATTTCTCGTTGTAATTgt...... : 1401237 272 : arget Intron 1 >>>> AlaValHisGluAspAsnSerLeuProLeuLeuLe : 282 83 bp ||||||||| ||||||.!!:!!||||||||||| ++AlaValHisIleAspAsnGlyValProLeuLeuLe 1401238 : ...................aggCAGTACATATCGACAATGGAGTTCCTCTGTTACT : 1401351 283 : uLysSerValLeuPheTyrMetValIleCysLeuGluAlaPheIleTyrCysPheA : 301 |||||||:::|||||||||:::|||||||||||||||||||||||||||||||||! uLysSerLeuLeuPheTyrValValIleCysLeuGluAlaPheIleTyrCysPheV 1401352 : CAaatctcttttattttatgtgGTTATTTGTTTAGAAGCGTTTATATACTGCTTTG : 1401408 302 : laGlyGluTyrLeuArgIleLys >>>> Target Intron 2 >>>> SerL : 310 .!||||||||||||!!!|||||| 1004 bp |||: alGlyGluTyrLeuSerIleLys++ ++SerG 1401409 : TCGGAGAATATCTCAGTATCAAGgt.........................agAGCC : 1402439 311 : ysLeuIleGlyAspThrAlaTyrGluPheLeuTrpTyrAspLeuArgProAsnGlu : 328 !!|||||||||:!!||||||||||||||||||||||||||||||||| !!!.!||| lnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGlu 1402440 : AACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAA : 1402493 329 : SerGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPh : 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| SerGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPh 1402494 : AGCCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACGTttacttt : 1402550 348 : eGlyLysPheSerSerLeuSerLeuGluSerPheThrGly >>>> Target In : 361 |||||||||||||||||||||||||||||||||||||!.! 169 eGlyLysPheSerSerLeuSerLeuGluSerPheThrAla++ 1402551 : tggaaaattttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.............. : 1402594 362 : tron 3 >>>> IleMetLysIleSerAlaSerTyrIleSerValLeuLeuAlaV : 375 bp |||||||||:!!||||||||||||||||||||||||||||||| ++IleMetLysValSerAlaSerTyrIleSerValLeuLeuAlaV 1402595 : ...........agATCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAG : 1402803 376 : alTyr : 376 ||||| alTyr 1402804 : TGTAT : 1402808 vulgar: AfOr165 198 376 . KQ414716.1 1401021 1402808 + 678 M 19 57 G 1 0 M 52 156 5 0 2 I 0 79 3 0 2 M 38 114 5 0 2 I 0 1000 3 0 2 M 52 156 5 0 2 I 0 165 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401022 1402808 678 + . gene_id 1 ; sequence AfOr165 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401022 1401234 . + . KQ414716.1 exonerate:protein2genome:local exon 1401022 1401234 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local splice5 1401235 1401236 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401235 1401317 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1401316 1401317 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1401318 1401431 . + . KQ414716.1 exonerate:protein2genome:local exon 1401318 1401431 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401432 1401433 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401432 1402435 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1402434 1402435 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402436 1402591 . + . KQ414716.1 exonerate:protein2genome:local exon 1402436 1402591 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1402592 1402593 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1402592 1402760 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1402759 1402760 . + . intron_id 2 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402761 1402808 . + . KQ414716.1 exonerate:protein2genome:local exon 1402761 1402808 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401022 1402808 678 + . alignment_id 1 ; Query AfOr165 ; Align 1401022 199 57 ; Align 1401079 219 156 ; Align 1401318 271 114 ; Align 1402436 309 156 ; Align 1402761 361 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr165 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 530 Query range: 0 -> 199 Target range: 1405074 -> 1406100 1 : MetLeuValLeuAsnThrLeuSerProSerValLysPheGlyLeuHisPheAlaGl : 19 ||| ! !:!!||||||:!!|||! !!!!|||||| !||||||!.!!:!|||!. MetThrSerIleAsnThrIleSerGlnThrValLysHisGlyLeuArgTyrAlaAl 1405075 : atgaCATCGATTAATACGATAAGTCAAACTGTAAAACATGGCCTCCGTTATGCTGC : 1405129 20 : yIleTrpProGlyThrAlaPheProTyrLeuHisLysLeuGlyTrpLeuAlaAlaM : 38 ! !|||||||||||| !!! |||||||||... ||| ! !!.!| aSerTrpProGlyThrProSerLeuIleLeuHisLysPhePheTrpThrIleValM 1405130 : CTCTTGGCCAGGAACACCATCGTtgattttacataaatttttttggaCAATTGTCA : 1405186 39 : etValAlaLeuGlnSerTyrGlnTyrArgTyrIleValMetHisTyrLysSerAsp : 56 || !!.!||||||! !||||||||| !!|||:!::!!! !|||||||||! !:!! etCysGlyLeuGlnIleTyrGlnTyrGlyTyrValIleArgHisTyrLysTyrAsn 1405187 : TGTGTGGACTTCAAATTTATCAGTACGGCTACGTGATCAGGCATTATAAATATAAC : 1405240 57 : AsnLeuMetSerIleIleAspAsnLeuSerIleAlaMetProPheSerLeuValPh : 75 !.!|||:!!..!! !:!!|||||||||||||||..!|||||||||!!!||||||! ThrLeuValAspThrValAspAsnLeuSerIleCysMetProPheThrLeuValCy 1405241 : ACTCTTGTGGATACAGTAGATAATTTGAGCATTTGCATGCCATTCACTTTAGTGTG : 1405297 76 : eIleLysLeuIleValThrTrpValAsnTyr{Gl} >>>> Target Intron : 86 !|||||||||.!!|||.!!|||..!:!! !{||} 429 bp sIleLysLeuPheValAlaTrpThrHisArg{Gl}++ 1405298 : CATCAAATTATTTGTTGCTTGGACACATCGC{GG}gt................... : 1405334 87 : 1 >>>> {y}ValPheCysAspIleLeuSerThrMetLysLysAspCysGlnLys : 101 {|}:!!.!!! !||||||:!!|||||||||:!!:!!||||||:!!||| ++{y}LeuLeuTyrAspIleIleSerThrMetGluGluAspCysLysLys 1405335 : ......ag{t}CTACTTTACGACATTATCTCGACCATGGAAGAAGACTGTAAAAAG : 1405804 102 : TyrAlaValIleAspIleAsnAsnLeuIleSerLysThrGlyGlnIleSerPheTy : 120 |||||||||:::||| ...||||||||||||||||||!.!!!.:!!|||||| TyrAlaValLeuAspThrLysAsnLeuIleSerLysThrAlaHisLeuSerPheAr 1405805 : TACGCTGTTCttgatacaaaaaatttaatatcaaaaaCAGCACATCTATCTTTTCG : 1405861 121 : rMetThrThrIleValMetSerSerTyrLeuValSerAlaValPheTyrIleThrG : 139 :!:|||!.!||||||!!:!!!! !! !:!! !|||.!!!.!! !||| !! !| gLeuThrAsnIleValIleCysIleCysValSerSerThrAlaCysTyrAlaIleG 1405862 : ATTAACCAATATAGTGATATGTATCTGTGTATCATCCACGGCATGTTATGCAATTG : 1405918 140 : lyThrLeuAlaPheGlnArgThrAsnAspSerIleSerArgGluLeuLeuPheLys : 157 ||..!|||||| |||||||||||| !!! ! !!||||||||||||.!.||| lyValLeuAlaProGlnArgThrAsnIleThrAlaProArgGluLeuLeuIleLys 1405919 : GAGTTTTGGCGCCACAAAGGACTAATATAACAGCACCTCGAGAACTTTTGATAAAA : 1405972 158 : MetAspLeuProPheGluThrSerGluSerProAsnTyrGluPheValValThrSe : 176 |||||||||||||||.!.|||!:!.!.||||||! !||||||.!.|||:!!..!! MetAspLeuProPheAsnThrAsnAsnSerProIleTyrGluLeuValIleValLe 1405973 : ATGGACTTGCCATTTAATACGAACAATTCGCCTATTTACGAGCTGGTAATAGTTTT : 1406029 177 : rGlnPheLeuIleHisValSerAlaAlaLeuThrPheGlyThrPheSerAlaLeuL : 195 !|||!:!||| ! ! ||||||.!!|||!!!|||||||||..!||||||::!|||| uGlnTyrLeuCysLysValSerThrAlaPheThrPheGlyValPheSerSerLeuL 1406030 : ACAATACCTATGCAAAGTATCGACAGCTTTTACGTTTGGTGTATTCAGCAGTCTGC : 1406086 196 : euLeuMetValVal : 199 ||||||||:!!||| euLeuMetMetVal 1406087 : TTTTGATGATGGTA : 1406100 vulgar: AfOr165 0 199 . KQ414716.1 1405074 1406100 + 530 M 85 255 S 0 2 5 0 2 I 0 425 3 0 2 S 1 1 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1405075 1406100 530 + . gene_id 2 ; sequence AfOr165 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1405075 1405331 . + . KQ414716.1 exonerate:protein2genome:local exon 1405075 1405331 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1405332 1405333 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1405332 1405760 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1405759 1405760 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1405761 1406100 . + . KQ414716.1 exonerate:protein2genome:local exon 1405761 1406100 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1405075 1406100 530 + . alignment_id 2 ; Query AfOr165 ; Align 1405075 1 255 ; Align 1405762 87 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr165 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 427 Query range: 82 -> 199 Target range: 1398607 -> 1398958 83 : ValAsnTyrGlyValPheCysAspIleLeuSerThrMetLysLysAspCysGlnLy : 101 :!! !:!!.!!|||||| !!||||||||||||||||||:!!:!!||||||||||| IlePheHisSerValPheSerAspIleLeuSerThrMetGluGluAspCysGlnLy 1398608 : ATATTTCACAGCGTATTTAGTGACATTTTATCAACCATGGAAGAGGATTGTCAGAA : 1398662 102 : sTyrAlaValIleAspIleAsnAsnLeuIleSerLysThrGlyGlnIleSerPheT : 120 |||||||!.!||||||||||||!!.|||!!:|||||||||||||||:::||||||| sTyrAlaAlaIleAspIleAsnLysLeuMetSerLysThrGlyGlnLeuSerPheT 1398663 : ATATGCTGCTATAGATATAAATAAGTTGATGTCAAAAACCGGACAgctatcttttt : 1398719 121 : yrMetThrThrIleValMetSerSerTyrLeuValSerAlaValPheTyrIleThr : 138 ||:::|||:::||||||||||||! !|||:!!!.!||||||!.!|||||||||||| yrLeuThrSerIleValMetSerLeuTyrMetAlaSerAlaAlaPheTyrIleThr 1398720 : atttaacaagcATTGTTATGTCTTTGTATATGGCATCTGCAGCATTTTACATAACT : 1398773 139 : GlyThrLeuAlaPheGlnArgThrAsnAspSerIleSerArgGluLeuLeuPheLy : 157 ..!|||:!!!.!|||||| !!!.!|||! !|||:!!|||||||||||||||.!.|| AsnThrIleGlyPheGlnGlyAsnAsnAlaSerValSerArgGluLeuLeuMetLy 1398774 : AATACTATTGGATTTCAAGGAAATAATGCTTCAGTATCTCGGGAGCTCCTTATGAA : 1398830 158 : sMetAspLeuProPheGluThrSerGluSerProAsnTyrGluPheValValThrS : 176 |||||||||||||||||||||||||||||||||||||||||||.!!|||||||||! sMetAspLeuProPheGluThrSerGluSerProAsnTyrGluLeuValValThrT 1398831 : AATGGATTTGCCTTTCGAGACCAGCGAATCGCCGAATTACGAACTTGTAGTAACTA : 1398887 177 : erGlnPheLeuIleHisValSerAlaAlaLeuThrPheGlyThrPheSerAlaLeu : 194 !!||| !!|||||||||:!!|||!.!|||:!!.!!!:!|||.!!|||!:!|||||| hrGlnValLeuIleHisLeuSerValAlaValAlaTyrGlyAlaPheAsnAlaLeu 1398888 : CACAGGTCCTTATTCACTTATCAGTGGCCGTAGCATACGGTGCATTCAATGCTCTT : 1398941 195 : LeuLeuMetValVal : 199 ||||||||||||||| LeuLeuMetValVal 1398942 : CTCTTAATGGTGGTA : 1398958 vulgar: AfOr165 82 199 . KQ414716.1 1398607 1398958 + 427 M 117 351 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1398608 1398958 427 + . gene_id 3 ; sequence AfOr165 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1398608 1398958 . + . KQ414716.1 exonerate:protein2genome:local exon 1398608 1398958 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1398608 1398958 427 + . alignment_id 3 ; Query AfOr165 ; Align 1398608 83 351 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr165 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 342 Query range: 225 -> 376 Target range: 1394257 -> 1395914 226 : LysPhePheIleIleArgTyrGlnGluIleIleIlePheAlaGluArgValGluLy : 244 |||! !!.||| !|||:!!!!...!||||||||| !:!!!!: !:!!|||!. LysSerLeuIleHisArgHisHisArgIleIleIleAsnSerAspSerIleGluSe 1394258 : AAATCATTAATTCACAGACATCATCGAATCATTATTAATTCGGACTCTATCGAGAG : 1394312 245 : sLeuPheThrTyrIleAlaLeuSerGlnLeuValSerAsnThrLeuIleThrCysC : 263 .||||||:!!||||||||||||! !|||! !:!!!!!|||||||||:!!! !|||| rLeuPheSerTyrIleAlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysC 1394313 : TCTTTTTTCATACATTGCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTT : 1394369 264 : ysValGlyPheLeuIleValIle >>>> Target Intron 1 >>>> AlaV : 272 ||:!!|||||||||||||||||| 464 bp ||| ysIleGlyPheLeuIleValIle++ ++AlaP 1394370 : GCATAGGATTCTTAATAGTAATTgt.........................agGCAT : 1394860 273 : alHisGluAspAsnSerLeuProLeuLeuLeuLysSerValLeuPheTyrMetVal : 290 !!:!! !|||...:::::: ...:::|||:::::!|||||||||!!:!.! heAsnThrAspGlyAsnIleLysThrPheIleLysThrLeuLeuPheTyrIleAla 1394861 : TTAATACAGatggaaatataaaaacatttataaaaacattACTCTTTTACATCGCT : 1394914 291 : IleCysLeuGluAlaPheIleTyrCysPheAlaGlyGluTyrLeuArgIleLys : 309 ||| !:!!||||||||||||!:!! !||||||||||||||||||!!!! !||| IleThrMetGluAlaPheIlePheSerPheAlaGlyGluTyrLeuSerAsnLys++ 1394915 : ATCACTATGGAAGCATTCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAAgt : 1394971 310 : >>>> Target Intron 2 >>>> SerLysLeuIleGlyAspThrAlaTyrGl : 318 353 bp ||| !! !|||.!!:!!.!!||||||.. ++SerLeuSerIleSerAsnAlaAlaTyrSe 1394972 : .........................agAGTCTATCAATTAGCAATGCAGCATATAG : 1395351 319 : uPheLeuTrpTyrAspLeuArgProAsnGluSerGlnLeuLeuIleProValIleL : 337 .! ! !|||||| !||| !|||.!.!!:!!!!!.:!!:!!|||! !:!!!!:: rSerProTrpTyrLeuLeuAspProGlnAspArgHisIleIleIleLeuLeuMetI 1395352 : CTCACCTTGGTACCTTCTGGATCCTCAAGACAGACATATCATTATTCTTCTCATGA : 1395408 338 : euArgSerGlnLysGlyPheThrPheThrPheGlyLysPheSerSerLeuSerLeu : 355 !!|||||||||!:! !!!!.|||.!!||| !|||||||||! !..!||||||||| leArgSerGlnArgArgLeuThrIleThrAlaGlyLysPheMetAspLeuSerLeu 1395409 : TAAGATCTCAAAGACGATTAACAATCACCGCTGGAAAATTTATGGACTTGTCTTTA : 1395462 356 : GluSerPheThrGly >>>> Target Intron 3 >>>> IleMetLysIle : 364 |||.!!|||.!!..! 387 bp |||:!:||| ! GluGlyPheAlaAsn++ ++IleLeuLysAla 1395463 : GAAGGTTTTGCAAATgt.........................agatcTTAAAGGCT : 1395876 365 : SerAlaSerTyrIleSerValLeuLeuAlaValTyr : 376 ||||||||||||||||||||||||! !|||:!!||| SerAlaSerTyrIleSerValLeuTyrAlaMetTyr 1395877 : TCTGCATCGTACATATCTGTACTGTATGCGATGTAC : 1395914 vulgar: AfOr165 225 376 . KQ414716.1 1394257 1395914 + 342 M 45 135 5 0 2 I 0 460 3 0 2 M 38 114 5 0 2 I 0 349 3 0 2 M 52 156 5 0 2 I 0 383 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394258 1395914 342 + . gene_id 4 ; sequence AfOr165 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394258 1394392 . + . KQ414716.1 exonerate:protein2genome:local exon 1394258 1394392 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394393 1394394 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394393 1394856 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394855 1394856 . + . intron_id 0 ; splice_site "aG" KQ414716.1 exonerate:protein2genome:local cds 1394857 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394857 1394970 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394971 1394972 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394971 1395323 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1395322 1395323 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1395324 1395479 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395479 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1395480 1395481 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1395480 1395866 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1395865 1395866 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1395867 1395914 . + . KQ414716.1 exonerate:protein2genome:local exon 1395867 1395914 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394258 1395914 342 + . alignment_id 4 ; Query AfOr165 ; Align 1394258 226 135 ; Align 1394857 271 114 ; Align 1395324 309 156 ; Align 1395867 361 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr165 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 312 Query range: 198 -> 308 Target range: 1408216 -> 1408635 199 : ValLeuHisIleGlyCysGlnIleAspIleLeuCysGlnAsnLeuLeuHisIleSe : 217 |||||||||:!!||||||||||||||||||:!!||||||!..||| !.!.:!! ValLeuHisLeuGlyCysGlnIleAspIleMetCysGlnThrLeuLysGluVal-- 1408217 : GTGCTTCATCTAGGTTGTCAAATCGATATTATGTGCCAGACATTAAAGGAGGTT-- : 1408271 218 : rProHisIleCysAlaSerHisLeuLysPhePheIleIleArgTyrGlnGluIleI : 236 |||:!!! ! !!!!!!.|||!:!|||||||||! !|||:!!|||:!!|||| -ProTyrLysAsnLysThrGlnLeuArgPhePheIleSerArgHisGlnGlnIleI 1408272 : -CCTTATAAGAATAAAACTCAACTGAGATTCTTCATCAGCAGACATCAACAGATCA : 1408325 237 : leIlePheAlaGluArgValGluLysLeuPheThrTyrIleAlaLeuSerGlnLeu : 254 |||||||||||||||||:!!||||||||||||||||||:!!||||||||||||||| leIlePheAlaGluArgIleGluLysLeuPheThrTyrLeuAlaLeuSerGlnLeu 1408326 : TCATATTTGCAGAGAGAATAGAAAAACTGTTTACGTATCTAGCACTTAGTCAACTT : 1408379 255 : ValSerAsnThrLeuIleThrCysCysVal{Gl} >>>> Target Intron 1 : 265 :!!|||||||||||||||||||||||||||{||} 86 bp LeuSerAsnThrLeuIleThrCysCysVal{Gl}-+ 1408380 : CTCTCGAATACCCTAATTACTTGCTGCGTG{GG}tt.................... : 1408416 266 : >>>> {y}<-><->PheLeuIleValIleAlaValHisGluAspAsnSerLeuP : 279 {|} !|||! :!! |||:!!!!..!.:!!|||.!!!!! ++{y}***SerAsnLeuThrLeuGlnAlaLeuGlnAsnAsnAsnGlyPheL 1408417 : .....ag{A}TGATCGAATTTAACGTTACAGGCACTACAAAATAATAATGGATTTA : 1408546 280 : roLeuLeuLeuLysSerValLeuPheTyrMetValIleCysLeuGluAlaPheIle : 297 !:!!|||:!!|||! !|||:!!!:!||||||!.!:!:|||! !|||||||||||| ysMetLeuIleLysPheValValTyrTyrMetAlaValCysSerGluAlaPheIle 1408547 : AAATGTTGATCAAATTTGTTGTATATTACATGGCTGTGTGCTCAGAAGCGTTCATA : 1408600 298 : TyrCysPheAlaGlyGluTyrLeuArgIleLys : 308 ||||||||||||||||||||||||!.!|||||| TyrCysPheAlaGlyGluTyrLeuAsnIleLys 1408601 : TACTGCTTTGCTGGAGAGTACCTTAATATCAAG : 1408635 vulgar: AfOr165 198 308 . KQ414716.1 1408216 1408635 + 312 M 18 54 G 1 0 M 47 141 S 0 2 5 0 2 I 0 82 3 0 2 S 1 1 G 0 6 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408217 1408635 312 + . gene_id 5 ; sequence AfOr165 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408217 1408413 . + . KQ414716.1 exonerate:protein2genome:local exon 1408217 1408413 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local splice5 1408414 1408415 . + . intron_id 1 ; splice_site "TT" KQ414716.1 exonerate:protein2genome:local intron 1408414 1408499 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1408498 1408499 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1408500 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408500 1408635 . + . insertions 6 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408217 1408635 312 + . alignment_id 5 ; Query AfOr165 ; Align 1408217 199 54 ; Align 1408271 218 141 ; Align 1408507 266 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr165 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 250 Query range: 4 -> 199 Target range: 1390535 -> 1392022 5 : AsnThrLeuSerProSerValLysPheGlyLeuHisPheAlaGlyIleTrpProGl : 23 !!.!:!:!!|||! ! !!|||:!!.!!||||||...!!..!!|||||||||||||| LysSerIleSerArgProValGluIleGlyLeuArgLeuThrGlyIleTrpProGl 1390536 : AAAAGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGGAATTTGGCCAGG : 1390590 24 : yThrAlaPheProTyrLeuHisLysLeuGlyTrpLeuAlaAlaMetValAlaLeuG : 42 |:!!:!!!:! ! !:!! !::!:!! !|||:!! ! !|||..!!.!:!!| ySerSerTyrGluIleIleValArgValThrTrpIleIleLeuMetThrValValG 1390591 : TTCATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTATGACAGTTGTAC : 1390647 43 : lnSerTyrGlnTyrArgTyrIleValMetHisTyrLysSerAspAsnLeuMetSer : 60 ||! !!:!|||||||||||||||:!!! !||| ! ! .!!..!|||||| !!:! lnIlePheGlnTyrArgTyrIleIleLysHisLeuAspGlySerAsnLeuAlaAsn 1390648 : AAATATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGTAATCTGGCGAAC : 1390701 61 : IleIleAspAsnLeuSerIleAlaMetProPheSerLeuValPheIleLysLeuIl : 79 :!!||||||!:!:!!.!!! !.!!:!:|||!:!||||||:!!!:!:::|||||||| LeuIleAspSerValGlyThrThrLeuProTyrSerLeuLeuTyrValLysLeuIl 1390702 : TTAATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTATgtcaaattaat : 1390758 80 : eValThrTrpValAsnTyr{Gl} >>>> Target Intron 1 >>>> {y}V : 87 |::: |||..!!!. !{||} 884 bp {|}: eIlePheTrpThrLysArg{Gl}++ ++{y}I 1390759 : tattttctggaCTAAACGT{GG}gt.........................ag{a}a : 1391666 88 : alPheCysAspIleLeuSerThrMetLysLysAspCysGlnLysTyrAla<-><-> : 104 ::||| ::::::||| ! !|||...!!.|||!! ...!!.! !:!! lePheGluAsnMetLeuValGlyMetSerAsnAspTrpSerAsnSerSerSerThr 1391667 : tattcgaaaatatgtTAGTGGGAATGTCTAACGATTGGAGTAATTCTTCATCAACG : 1391720 105 : ValIleAspIleAsnAsnLeuIleSerLysThrGlyGlnIleSerPheTyrMetTh : 122 !.!!||||||||| !:!!||||||||| !.!:!!:!!:!!!:! ! :! LysPheAspIleAsnAlaMetIleSerLys---AlaGluLeuAlaTyrArgTyrSe 1391721 : AAATTTGACATAAACGCCATGATAAGTAAA---GCTGAACTTGCGTATCGTTATTC : 1391774 123 : rThrIleValMetSerSerTyrLeuValSerAlaValPheTyrIleThrGlyThrL : 141 !! !:!!:!!||||||!!!||| !:!!:!!!.! !! !|||! !!:!! ! !! rLysValIleMetSerThrTyrAlaIleAlaValPheAlaTyrThrSerValPheP 1391775 : GAAGGTAATTATGAGCACATATGCTATTGCCGTTTTCGCTTATACCAGCGTGTTTT : 1391831 142 : euAlaPheGlnArgThrAsnAspSerIleSerArgGluLeu<-><-><-><-><-> : 155 !!! !|||..!||| !:!!:!!..! !..! !!!:||| heGluPheMetArgHisAspAsnAspGlyGluTyrAspLeuLysSerArgGluLeu 1391832 : TCGAGTTTATGCGTCACGACAACGACGGCGAATATGATTTAAAGTCTCGAGAACTT : 1391885 156 : LeuPheLysMetAspLeuProPheGluThrSerGluSerProAsnTyrGluPheVa : 173 |||.!.||||||||||||||||||! ! !! !:!!!!!|||!..|||:!!!::|| LeuMetLysMetAspLeuProPheAlaTyrTyrLysThrProThrTyrGlnTrpVa 1391886 : TTGATGAAAATGGACCTCCCGTTTGCGTATTACAAAACACCGACGTATCAATGGGT : 1391942 174 : lValThrSerGlnPheLeuIleHisValSerAlaAlaLeuThrPheGlyThrPheS : 192 | !!..! !||||||||| ! :!!! ! !|||! !.!!.!!|||! !!!.. lPheValValGlnPheLeuGlnLeuLeuIleAsnAlaSerAlaIleGlyMetLeuA 1391943 : ATTTGTTGTACAATTTCTTCAGCTGTTGATAAATGCATCTGCTATTGGTATGTTAG : 1391999 193 : erAlaLeuLeuLeuMetValVal : 199 .!||||||:!!:!!! !:!!||| spAlaLeuIleIleThrLeuVal 1392000 : ATGCTTTGATAATTACGTTGGTA : 1392022 vulgar: AfOr165 4 199 . KQ414716.1 1390535 1392022 + 250 M 81 243 S 0 2 5 0 2 I 0 880 3 0 2 S 1 1 M 17 51 G 0 6 M 10 30 G 1 0 M 40 120 G 0 15 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390536 1392022 250 + . gene_id 6 ; sequence AfOr165 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1390536 1390780 . + . KQ414716.1 exonerate:protein2genome:local exon 1390536 1390780 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1390781 1390782 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1390781 1391664 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1391663 1391664 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1391665 1392022 . + . KQ414716.1 exonerate:protein2genome:local exon 1391665 1392022 . + . insertions 21 ; deletions 1 KQ414716.1 exonerate:protein2genome:local similarity 1390536 1392022 250 + . alignment_id 6 ; Query AfOr165 ; Align 1390536 5 243 ; Align 1391666 87 51 ; Align 1391723 104 30 ; Align 1391753 115 120 ; Align 1391888 155 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr165 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 217 Query range: 304 -> 361 Target range: 1409037 -> 1409208 305 : LeuArgIleLysSerLysLeuIleGlyAspThrAlaTyrGluPheLeuTrpTyrAs : 323 :!! !.!!:::||||||||||||||||||||||||||||||||||||||||||:! IleAspPheGlnSerLysLeuIleGlyAspThrAlaTyrGluPheLeuTrpTyrAs 1409038 : ATTGATTTTcagagtaaactgattggagACACGGCGTATGAATTTCTTTGGTATAA : 1409092 324 : pLeuArgProAsnGluSerGlnLeuLeuIleProValIleLeuArgSerGlnLysG : 342 !:!!!.! !!!!.||||||!:!|||:!!:!:! !|||||||||||||||||||||| nMetHisSerLysGluSerArgLeuMetLeuLeuValIleLeuArgSerGlnLysG 1409093 : TATGCATTCGAAGGAAAGCCGACTTATGTTGCTTGTAATACTACGATCACAGAAAG : 1409149 343 : lyPheThrPheThrPheGlyLysPheSerSerLeuSerLeuGluSerPheThrGly : 360 ||||||||||||||||||||||||||:::|||||||||:!!|||||||||.!!||| lyPheThrPheThrPheGlyLysPheAlaSerLeuSerMetGluSerPheAlaGly 1409150 : GATTTACtttcacttttggaaaatttgcaagtCTTTCCATGGAAAGTTTTGCAGGC : 1409203 361 : Ile : 361 :!! Val 1409204 : GTA : 1409208 vulgar: AfOr165 304 361 . KQ414716.1 1409037 1409208 + 217 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1409038 1409208 217 + . gene_id 7 ; sequence AfOr165 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1409038 1409208 . + . KQ414716.1 exonerate:protein2genome:local exon 1409038 1409208 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1409038 1409208 217 + . alignment_id 7 ; Query AfOr165 ; Align 1409038 305 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr165 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 308 -> 375 Target range: 1387619 -> 1387955 309 : SerLysLeuIleGlyAspThrAlaTyrGluPheLeuTrpTyrAspLeuArgProAs : 327 |||:!!! !||| !.!.:!:...|||...||||||||||||||||||!:!|||.. SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 328 : nGluSerGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheT : 346 .|||:!!!::::::::::: :::||||||||||||||||||! !!!.! !.!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 347 : hrPheGlyLysPheSerSerLeuSerLeuGluSerPheThrGly >>>> Targe : 361 || ||||||||| !!:!|||||||||! :!!|||.!!... hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt.......... : 1387778 362 : t Intron 1 >>>> IleMetLysIleSerAlaSerTyrIleSerValLeuLeu : 373 135 bp ::::!:||| !||||||||||||:!!|||||||||! ! ++MetLeuLysAlaSerAlaSerTyrValSerValLeuHis 1387779 : ...............agatgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTTGCAT : 1387947 374 : AlaVal : 375 |||:!! AlaMet 1387948 : GCAATG : 1387955 vulgar: AfOr165 308 375 . KQ414716.1 1387619 1387955 + 160 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387955 160 + . gene_id 8 ; sequence AfOr165 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387955 160 + . alignment_id 8 ; Query AfOr165 ; Align 1387620 309 156 ; Align 1387911 361 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr165 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 0 -> 84 Target range: 1385619 -> 1385868 1 : MetLeuValLeuAsnThrLeuSerProSerValLysPheGlyLeuHisPheAlaGl : 19 ||| ! ! !!.!! !:!!!:!! ! !!:!!:!!!:!.!!|||!.!.!. !|| MetThrSerThrThrIleIleAsnArgProLeuGluTyrSerLeuArgLeuPheGl 1385620 : ATGACTTCGACGACTATAATTAATCGTCCATTGGAATATAGCCTCCGTCTATTTGG : 1385674 20 : yIleTrpProGlyThrAlaPheProTyrLeuHisLysLeuGlyTrpLeuAlaAlaM : 38 | !||||||! !:!!:!!!:! !!!:!||| ! !..:!! !|||! !.!! !| yAlaTrpProAspSerSerTyrSerPheLeuLysSerIleIleTrpSerThrIleM 1385675 : CGCCTGGCCAGATTCTTCCTATTCATTTCTGAAAAGTATTATTTGGTCGACGATAA : 1385731 39 : etValAlaLeuGlnSerTyrGlnTyrArgTyrIleValMetHisTyrLysSerAsp : 56 ||!.!...... :::|||||| !!||| !:!!! ||| !!:!||| etAlaThrPheLeuMetPheGlnTyrTrpTyrCysIleThrHisIleArgSer--- 1385732 : TGGCAAcgtttttaatgtttcaataTTGGTATTGTATTACTCATATTAGATCA--- : 1385785 57 : AsnLeuMetSerIleIleAspAsnLeuSerIleAlaMetProPheSerLeuValPh : 75 ...|||:::...::::::|||...|||||||||.!!:!: !! !||||||||||| GlyLeuIleAspLeuLeuAspGlyLeuSerIleThrLeuSerAsnSerLeuValPh 1385786 : ggtttaattgatttattgGACGGATTGAGTATTACTTTATCAAATTCACTCGTCTT : 1385839 76 : eIleLysLeuIleValThrTrpValAsn : 84 |:!!|||||||||:!!! !|||:!!:!! eLeuLysLeuIleIleIleTrpLeuHis 1385840 : TCTCAAATTGATTATTATTTGGCTTCAT : 1385868 vulgar: AfOr165 0 84 . KQ414716.1 1385619 1385868 + 135 M 55 165 G 1 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1385620 1385868 135 + . gene_id 9 ; sequence AfOr165 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1385620 1385868 . + . KQ414716.1 exonerate:protein2genome:local exon 1385620 1385868 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local similarity 1385620 1385868 135 + . alignment_id 9 ; Query AfOr165 ; Align 1385620 1 165 ; Align 1385785 57 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr165 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 224 -> 269 Target range: 1387203 -> 1387338 225 : LeuLysPhePheIleIleArgTyrGlnGluIleIleIlePheAlaGluArgValGl : 243 :!!||| ! !!:!!:!!|||:!!|||..!|||||| !.!.:!!:!!!.!:!!|| IleLysAspValValValArgHisGlnArgIleIleArgLeuSerLysAsnIleGl 1387204 : ATAAAGGATGTCGTTGTTAGGCATCAACGAATTATACGACTGTCTAAAAATATCGA : 1387258 244 : uLysLeuPheThrTyrIleAlaLeuSerGlnLeuValSerAsnThrLeuIleThrC : 262 |! !:!!||||||||||||:!!|||! |||...:::|||||| |||:!!! !| uThrValPheThrTyrIleSerLeuCysGlnPheLeuSerAsnMetLeuValIleC 1387259 : GACAGTTTTTACTTATATATCATTATgccaatttttatcgaatatgcTGGTTATCT : 1387315 263 : ysCysValGlyPheLeuIleVal : 269 ||! !:!!.!!|||:!!:!:||| ysPheIleSerPheValLeuVal 1387316 : GTTTCATAAGCTTCGTTTTGGTA : 1387338 vulgar: AfOr165 224 269 . KQ414716.1 1387203 1387338 + 106 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387204 1387338 106 + . gene_id 10 ; sequence AfOr165 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387204 1387338 . + . KQ414716.1 exonerate:protein2genome:local exon 1387204 1387338 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387204 1387338 106 + . alignment_id 10 ; Query AfOr165 ; Align 1387204 225 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr168 Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 645 Query range: 0 -> 228 Target range: 57441 -> 58125 1 : MetAsnPheGlnAsnLeuAsnArgLeuAsnAlaPheAlaAsnMetIleSerGlyAsnPhe : 20 |||:!!||||||!:!|||!:!!:!|||||| !.!! !|||! ! !||||||||| MetAspPheGlnSerLeuSerGlnLeuAsnMetLeuIleAsnLysTyrSerGlyAsnGln 57442 : ATGGATTTTCAAAGCTTGAGTCAGCTAAATATGCTTATAAACAAGTATTCGGGGAATCAA : 57499 21 : LeuProMetThrAsnIleAsnGluLysSerSerIleValSerLysIleTyrPheValIle : 40 ||||||||||||:!!! !!. !|||! ! !! !:!!! !|||! !|||! :!!!!: LeuProMetThrAspLysLysThrLysLeuProTyrIleLeuLysSerTyrSerIleMet 57500 : CTACCGATGACGGATAAGAAAACGAAATTACCGTATATTTTAAAGAGCTATTCGATTATG : 57559 41 : ValTrpIleIleGlnLeuIleTyrLeuAlaAlaCysThrLeuGlyLeuPheAsnValPro : 60 !|||:!:|||||||||! !||||||.!!!.!|||..!!!!|||||||||||||||||| SerTrpLeuIleGlnLeuThrTyrLeuThrValCysValPheGlyLeuPheAsnValPro 57560 : TCTTGGCTGATACAGCTAACATACCTGACTGTCTGCGTTTTTGGTCTTTTCAACGTACCC : 57619 61 : TrpGluArgSerLeuLysAspGlyThrValAsnMetValLeuLeuPheGluValIleIle : 80 ! !!:!:!:!!|||||||||||||||||||||!!:|||:!! !!!.|||! !|||:!: ArgAspLysAlaLeuLysAspGlyThrValAsnIleValValAlaLeuGluGluIleVal 57620 : AGAGATAAAGCATTGAAGGACGGCACGGTAAATATAGTGGTTGCTTTAGAAGAAATTGTG : 57679 81 : LeuAsnIleTyrLeuHisSerArgArgAsnLeuLeuArgGluLeuIleGlyLysLeuAsn : 100 ||| !||||||||||||!:!|||!:!!.!|||:!!|||..!|||||||||:!!|||||| LeuValIleTyrLeuHisAsnArgLysThrLeuValArgArgLeuIleGlyGluLeuAsn 57680 : CTGGTTATTTATTTGCACAACCGTAAAACTTTGGTACGAAGGTTAATTGGAGAACTGAAT : 57739 101 : HisValLeuIleAsnGluAspGluMetPheArgAspValThrIleSerThrIleLysThr : 120 !.!|||||| !!::!!||||||.!.|||:!!|||||||||!:!|||:!:|||:!! ArgValLeuAlaValAspAsnGluMetLeuArgAsnValThrIleAsnThrValLysSer 57740 : CGTGTTCTCGCGGTAGATAACGAGATGCTACGAAATGTCACGATTAATACCGTGAAATCC : 57799 121 : LeuGluLysProLeuArgIleTyrIleLeuValAsnValThrSerIleMetValTrpIle : 140 |||||||||||||||:::|||||| ::!!.!!:!|||!.!:!!:!!|||:!!|||! ! LeuGluLysProLeuLysIleTyrThrIleAlaSerValAsnAlaValMetLeuTrpThr 57800 : TTAGAGAAAcccttgaaaatttatacgatTGCCAGTGTTAATGCAGTTATGCTTTGGACA : 57859 141 : SerSerProLeuIleLysLeuPheGlnLysAsnGluPheTyrTyrGluAspPheThrMet : 160 :!!! !||||||:!!:!!:!!|||!:!!:!::!|||||||||||| !|||!:!!:!:!! AlaLeuProLeuValGlnValPheArgArgSerGluPheTyrTyrThrAspTyrSerVal 57860 : GCTTTGCCACTCGTCCAAGTATTTCGGAGATCTGAGTTCTATTATACGGATTATAGTGTG : 57919 161 : ProValValLeuSerGluGlnProPheSerThrGlyValPheIleCysGlyValPheLeu : 180 |||!.!!.!||||||:!!|||||||||||| !! !||||||:!! !!|||||| !!||| ProAlaAlaLeuSerLysGlnProPheSerTyrAspValPheValGlyGlyValValLeu 57920 : CCAGCTGCTCTATCTAAGCAACCGTTTTCATACGACGTTTTCGTCGGCGGCGTTGTTCTT : 57979 181 : GlnLeuPheGlyGlyGluTyrLeuLeuPheArgLysIleSerLeuAspLeuTyrThrMet : 200 |||:!!.!!||||||! !||| :::...:::||||||...:!!|||:!!||||||||| GlnIleIleGlyGlyValTyrThrValMetLysLysIleGlyValAspIleTyrThrMet 57980 : CAGATTATTGGTGGTGTATACAccgtaatgaaaaaaattggcgTGGATATTTATACGATG : 58039 201 : HisLeuAsnLeuLeuIleThrAlaGlnTyrLysTyrLeuArgIleLysPheAlaThrVal : 220 ||||||! !||||||!!:||||||||||||||||||:!!||| !||| !!|||! !..! HisLeuIleLeuLeuMetThrAlaGlnTyrLysTyrIleArgGlyLysValAlaMetThr 58040 : CATTTGATTCTTTTAATGACGGCGCAGTACAAATATATTAGGGGCAAAGTTGCGATGACA : 58099 221 : LeuLysGluLysGlyGluThrPhe : 228 !!!::!:!! ! ..!|||.!!||| PheArgGlnTyrAsnGluAlaPhe 58100 : TTTCGACAGTATAACGAAGCTTTC : 58125 vulgar: AfOr168 0 228 . KQ414777.1 57441 58125 + 645 M 228 684 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 57442 58125 645 + . gene_id 1 ; sequence AfOr168 ; gene_orientation . KQ414777.1 exonerate:protein2genome:local cds 57442 58125 . + . KQ414777.1 exonerate:protein2genome:local exon 57442 58125 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 57442 58125 645 + . alignment_id 1 ; Query AfOr168 ; Align 57442 1 684 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr168 Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 427 Query range: 259 -> 399 Target range: 61693 -> 63134 260 : GluMetThrGlyMetLeuLysLysLeuLeuSerProAsnIleGlyValLeuTyrLeuAsn : 279 ...|||||| !|||||||||||||||||||||||||||||||||:!!||||||:!!||| ArgMetThrIleMetLeuLysLysLeuLeuSerProAsnIleGlyIleLeuTyrValAsn 61694 : aggaTGACTATTATGTTGAAGAAATTACTATCTCCAAACATTGGAATACTTTACGTAAAC : 61751 280 : TyrValPheArgPheCysPheLeuSerPheMetPheAlaThr >>>> Target Intr : 294 !!||||||||||||||||||||||||!!.|||.!! !||| 80 bp AsnValPheArgPheCysPheLeuSerLeuMetIleIleThr++ 61752 : AACGTTTTCCGGTTCTGCTTTCTAAGTTTAATGATTATAACGgt................ : 61798 295 : on 1 >>>> ThrSerLeuLeuGluLysLeuThrTyrThrIleIleValSerTyrThrT : 310 ...||| :::...... |||||||||! !||||||! ++AsnSer---GlyAspAsnPheGluLysLeuIleIleValMetTyrThrI 61799 : .........agaattcc---ggagataattttgaaaaattgataattgtaATGTATACAA : 61921 311 : hrGlyAlaLeuIleGlnPheTyrIleLeuCysTyrCysIleGlnAspLeuPheGluAla : 330 !|||||||||! |||||||||:!!||||||!:!|||||||||!!:||| !!|||||| leGlyAlaLeuThrGlnPheTyrValLeuCysPheCysIleGlnGluLeuValGluAla+ 61922 : TTGGTGCTCTAACGCAATTTTATGTATTGTGCTTCTGTATTCAAGAGTTAGTCGAAGCGg : 61981 331 : >>>> Target Intron 2 >>>> SerSerSerIleAlaAspAspValValTyrGl : 340 120 bp |||!!!|||:!!|||||||||||||||:!!|| + ++SerThrSerValAlaAspAspValValHisGl 61982 : t.........................agAGCACATCTGTAGCGGACGATGTAGTACATGA : 62131 341 : uLysTrpTyrSerTyrAspValArgPheGlnArgValIleLeuMetIleSerLeuAlaAs : 360 |::!||||||! !! !||||||! ! ! |||||||||||| !||||||! !||||||:! uArgTrpTyrPheCysAspValLeuValGlnArgValIleAlaMetIleIleLeuAlaAs 62132 : ACGATGGTATTTCTGTGATGTACTAGTACAACGAGTAATTGCTATGATTATTTTAGCTGA : 62191 361 : nGluLeuLysCysLysIleSerAsnPheGlnAsnIleAspLeuThrLeuProSerPheMe : 380 !:!!:!!:!!|||!:!:!:|||!:!|||!:!||||||||||||||||||||||||||||| pLysMetGluCysArgLeuSerSerPheArgAsnIleAspLeuThrLeuProSerPheMe 62192 : TAAAATGGAATGTAGACTGTCCAGTTTTCGGAACATAGATTTAACTTTACCATCTTTTAT : 62251 381 : tSer >>>> Target Intron 3 >>>> IleLeuAsnGlnAlaTyrSerIleCys : 390 |||| 824 bp |||||||||||||||||||||! ! !! tSer++ ++IleLeuAsnGlnAlaTyrSerThrSer 62252 : GTCGgt.........................agATTCTAAACCAAGCATACTCGACTAGT : 63105 391 : LeuLeuPheLeuLysThrLysGlnAsp : 399 |||||||||||||||.!!||| !||| LeuLeuPheLeuLysAlaLys***Asp 63106 : TTGCTGTTTTTGAAAGCAAAATGAGAT : 63134 vulgar: AfOr168 259 399 . KQ414777.1 61693 63134 + 427 M 34 102 5 0 2 I 0 76 3 0 2 M 2 6 G 1 0 M 33 99 5 0 2 I 0 116 3 0 2 M 52 156 5 0 2 I 0 820 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 61694 63134 427 + . gene_id 2 ; sequence AfOr168 ; gene_orientation + KQ414777.1 exonerate:protein2genome:local cds 61694 61795 . + . KQ414777.1 exonerate:protein2genome:local exon 61694 61795 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local splice5 61796 61797 . + . intron_id 1 ; splice_site "GT" KQ414777.1 exonerate:protein2genome:local intron 61796 61875 . + . intron_id 1 KQ414777.1 exonerate:protein2genome:local splice3 61874 61875 . + . intron_id 0 ; splice_site "ag" KQ414777.1 exonerate:protein2genome:local cds 61876 61980 . + . KQ414777.1 exonerate:protein2genome:local exon 61876 61980 . + . insertions 0 ; deletions 1 KQ414777.1 exonerate:protein2genome:local splice5 61981 61982 . + . intron_id 2 ; splice_site "GT" KQ414777.1 exonerate:protein2genome:local intron 61981 62100 . + . intron_id 2 KQ414777.1 exonerate:protein2genome:local splice3 62099 62100 . + . intron_id 1 ; splice_site "AG" KQ414777.1 exonerate:protein2genome:local cds 62101 62256 . + . KQ414777.1 exonerate:protein2genome:local exon 62101 62256 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local splice5 62257 62258 . + . intron_id 3 ; splice_site "GT" KQ414777.1 exonerate:protein2genome:local intron 62257 63080 . + . intron_id 3 KQ414777.1 exonerate:protein2genome:local splice3 63079 63080 . + . intron_id 2 ; splice_site "AG" KQ414777.1 exonerate:protein2genome:local cds 63081 63134 . + . KQ414777.1 exonerate:protein2genome:local exon 63081 63134 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 61694 63134 427 + . alignment_id 2 ; Query AfOr168 ; Align 61694 260 102 ; Align 61876 294 6 ; Align 61882 297 99 ; Align 62101 330 156 ; Align 63081 382 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr170P Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 652 Query range: 0 -> 261 Target range: 57441 -> 58233 1 : MetAsnPheGlnAsnLeuAsnArgLeuAsnValLeuValAsnMetIleSerGlyAsnPhe : 20 |||:!!||||||!:!|||!:!!:!||||||:!!|||:!!|||! ! !||||||||| MetAspPheGlnSerLeuSerGlnLeuAsnMetLeuIleAsnLysTyrSerGlyAsnGln 57442 : ATGGATTTTCAAAGCTTGAGTCAGCTAAATATGCTTATAAACAAGTATTCGGGGAATCAA : 57499 21 : LeuProMetAsnAsnIleSerGluLysLeuSerIleValLeuLysIleTyrPheValIle : 40 |||||||||!..:!!! !.! !|||||| !! !:!!||||||! !|||! :!!!!: LeuProMetThrAspLysLysThrLysLeuProTyrIleLeuLysSerTyrSerIleMet 57500 : CTACCGATGACGGATAAGAAAACGAAATTACCGTATATTTTAAAGAGCTATTCGATTATG : 57559 41 : AlaTrpIleIleGluValIleTyrValThrAlaCysPheLeuGlyLeuPheAsnValSer : 60 :!!|||:!:|||:!!:!!! !|||:!!|||!.!||| !!!!!||||||||||||||| !! SerTrpLeuIleGlnLeuThrTyrLeuThrValCysValPheGlyLeuPheAsnValPro 57560 : TCTTGGCTGATACAGCTAACATACCTGACTGTCTGCGTTTTTGGTCTTTTCAACGTACCC : 57619 61 : GlyGluLysAlaLeuLysAspGlyThrValAsnIleAlaIleSerPheGluValIleVal : 80 !!!!:||||||||||||||||||||||||||||||!.!:!!:!!!!.|||! !|||||| ArgAspLysAlaLeuLysAspGlyThrValAsnIleValValAlaLeuGluGluIleVal 57620 : AGAGATAAAGCATTGAAGGACGGCACGGTAAATATAGTGGTTGCTTTAGAAGAAATTGTG : 57679 81 : PheAsnIleTyrLeuHisSerArgLysLysLeuLeuHisLysLeuIleGlyLysLeuAsn : 100 .!. !||||||||||||!:!||||||! |||:!!!..!:!|||||||||:!!|||||| LeuValIleTyrLeuHisAsnArgLysThrLeuValArgArgLeuIleGlyGluLeuAsn 57680 : CTGGTTATTTATTTGCACAACCGTAAAACTTTGGTACGAAGGTTAATTGGAGAACTGAAT : 57739 101 : HisLeuLeuIleThrGluAspGluIlePheArgSerValIleIleAspThrValLysPro : 120 !.!:!!||| ..!!!::!!|||!!:.!.|||!:!|||! |||:!!||||||||| !! ArgValLeuAlaValAspAsnGluMetLeuArgAsnValThrIleAsnThrValLysSer 57740 : CGTGTTCTCGCGGTAGATAACGAGATGCTACGAAATGTCACGATTAATACCGTGAAATCC : 57799 121 : LeuGluMetProLeuLysIleTyrIleIleAlaSerValAlaSerLeuMetIleTrpIle : 140 ||||||! ||||||||||||||| |||||||||||| !:!!:!!|||:!!|||! ! LeuGluLysProLeuLysIleTyrThrIleAlaSerValAsnAlaValMetLeuTrpThr 57800 : TTAGAGAAAcccttgaaaatttatacgatTGCCAGTGTTAATGCAGTTATGCTTTGGACA : 57859 141 : LeuSerProLeuIleLysLeuPheUnkLysAsnGluPheTyrTyrGluAspPheIleMet : 160 !! !||||||:!!:!!:!!||| !:!::!|||||||||||| !|||!:!! !:!! AlaLeuProLeuValGlnValPheArgArgSerGluPheTyrTyrThrAspTyrSerVal 57860 : GCTTTGCCACTCGTCCAAGTATTTCGGAGATCTGAGTTCTATTATACGGATTATAGTGTG : 57919 161 : ProAlaValPheSerLysGlnProPheSerAsnAspIlePheIleCysGlyValLeuLeu : 180 ||||||!.!.!.|||||||||||||||||| !!|||:!!|||:!! !!||||||:!!||| ProAlaAlaLeuSerLysGlnProPheSerTyrAspValPheValGlyGlyValValLeu 57920 : CCAGCTGCTCTATCTAAGCAACCGTTTTCATACGACGTTTTCGTCGGCGGCGTTGTTCTT : 57979 181 : GlnLeuLeuGlyGlyGluAspMetIleMetArgLysIleSerLeuAspIleTyrThrIle : 200 |||:!!:!!||||||! ! !!! :::|||:::||||||...:!!||||||||||||!!: GlnIleIleGlyGlyValTyrThrValMetLysLysIleGlyValAspIleTyrThrMet 57980 : CAGATTATTGGTGGTGTATACAccgtaatgaaaaaaattggcgTGGATATTTATACGATG : 58039 201 : TyrLeuCysLeuLeuIleThrAlaGlnTyrLysTyrLeuLysIleLysPheAlaIleIle : 220 :!!||| !||||||!!:||||||||||||||||||:!!!:! !||| !!|||!!:! ! HisLeuIleLeuLeuMetThrAlaGlnTyrLysTyrIleArgGlyLysValAlaMetThr 58040 : CATTTGATTCTTTTAATGACGGCGCAGTACAAATATATTAGGGGCAAAGTTGCGATGACA : 58099 221 : LeuLysGluLysArgGluIleThrLysAspLeuTyrLysAspIleIleTrpGlnAsn<-> : 240 !!!::!:!! ! !.!||| ! ! ! |||!!! !!!...!|||! ! ! ! !!!. PheArgGlnTyrAsnGluAlaPheAspAspPheGlyAsnSerIleThrGlyLeuLysVal 58100 : TTTCGACAGTATAACGAAGCTTTCGATGATTTCGGCAACAGTATTACTGGACTGAAAGTT : 58159 241 : <-><->GluAsnValGluThrIleArgGlnGluMetLysLeuLeuThrArgHisPheGlu : 257 |||!!. !:!!..!|||!:!|||||||||!:!! ! !:!!!.!|||!:!||| SerCysGluLysGlnLysValIleLysGlnGluMetArgSerAlaSerHisHisTyrGlu 58160 : TCATGCGAGAAGCAAAAAGTGATCAAACAGGAAATGAGATCGGCGTCTCATCATTACGAA : 58219 258 : ThrValIleGlu : 261 ..!:!!:!!:!! ValIleValLys 58220 : GTTATAGTCAAG : 58233 vulgar: AfOr170P 0 261 . KQ414777.1 57441 58233 + 652 M 239 717 G 0 9 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 57442 58233 652 + . gene_id 1 ; sequence AfOr170P ; gene_orientation . KQ414777.1 exonerate:protein2genome:local cds 57442 58233 . + . KQ414777.1 exonerate:protein2genome:local exon 57442 58233 . + . insertions 9 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 57442 58233 652 + . alignment_id 1 ; Query AfOr170P ; Align 57442 1 717 ; Align 58168 240 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr170P Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 445 Query range: 262 -> 396 Target range: 61699 -> 63125 263 : ThrIleIleLeuLysLysLeuIleSerProAsnIleGlyPheLeuTyrLeuSerTyrVal : 282 ||||||!!:||||||||||||:!!|||||||||||||||.!.||||||:!!!:! !!||| ThrIleMetLeuLysLysLeuLeuSerProAsnIleGlyIleLeuTyrValAsnAsnVal 61700 : ACTATTATGTTGAAGAAATTACTATCTCCAAACATTGGAATACTTTACGTAAACAACGTT : 61757 283 : PheArgPheCysPheLeuSerPheMetPheAlaMet >>>> Target Intron 1 > : 295 |||||||||||||||||||||!!.|||.!! !! ! 80 bp PheArgPheCysPheLeuSerLeuMetIleIleThr++ 61758 : TTCCGGTTCTGCTTTCTAAGTTTAATGATTATAACGgt...................... : 61798 296 : >>> ThrThrAlaLysTyrPheGluLysCysLeuLeuValSerTyrThrLeuGlyAlaL : 313 ...:::... ||||||||| ::::::|||! !||||||:!!||||||| ++AsnSerGlyAspAsnPheGluLysLeuIleIleValMetTyrThrIleGlyAlaL 61799 : ...agaattccggagataattttgaaaaattgataattgtaATGTATACAATTGGTGCTC : 61930 314 : euIleGlnPheTyrIleLeuCysTyrCysIleGlnArgLeuPheGluAla >>>> Tar : 330 ||! |||||||||:!!||||||!:!|||||||||..!||| !!|||||| euThrGlnPheTyrValLeuCysPheCysIleGlnGluLeuValGluAla++ 61931 : TAACGCAATTTTATGTATTGTGCTTCTGTATTCAAGAGTTAGTCGAAGCGgt........ : 61983 331 : get Intron 2 >>>> SerSerSerIleAlaAspAspValValTyrGluLysTrpTy : 343 120 bp |||!!!|||:!!|||||||||||||||:!!|||::!||||| ++SerThrSerValAlaAspAspValValHisGluArgTrpTy 61984 : .................agAGCACATCTGTAGCGGACGATGTAGTACATGAACGATGGTA : 62140 344 : rPheHisAspValArgPheGlnArgValIleLeuMetIleSerLeuAlaAsnGluLeuLy : 363 |||| !||||||! ! ! |||||||||||| !||||||! !||||||:!!:!!:!!:! rPheCysAspValLeuValGlnArgValIleAlaMetIleIleLeuAlaAspLysMetGl 62141 : TTTCTGTGATGTACTAGTACAACGAGTAATTGCTATGATTATTTTAGCTGATAAAATGGA : 62200 364 : sCysLysIleSerAsnPheGlnAsnIleAspLeuThrLeuProSerPheMetSer >>> : 382 !|||!:!:!:|||!:!|||!:!||||||||||||||||||||||||||||||||| uCysArgLeuSerSerPheArgAsnIleAspLeuThrLeuProSerPheMetSer++ 62201 : ATGTAGACTGTCCAGTTTTCGGAACATAGATTTAACTTTACCATCTTTTATGTCGgt... : 62259 383 : > Target Intron 3 >>>> IleLeuAsnGlnAlaTyrSerValCysLeuLeuPhe : 393 824 bp |||||||||||||||||||||..! !!||||||||| ++IleLeuAsnGlnAlaTyrSerThrSerLeuLeuPhe 62260 : ......................agATTCTAAACCAAGCATACTCGACTAGTTTGCTGTTT : 63114 394 : LeuLysAla : 396 ||||||||| LeuLysAla 63115 : TTGAAAGCA : 63125 vulgar: AfOr170P 262 396 . KQ414777.1 61699 63125 + 445 M 32 96 5 0 2 I 0 76 3 0 2 M 35 105 5 0 2 I 0 116 3 0 2 M 52 156 5 0 2 I 0 820 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 61700 63125 445 + . gene_id 2 ; sequence AfOr170P ; gene_orientation + KQ414777.1 exonerate:protein2genome:local cds 61700 61795 . + . KQ414777.1 exonerate:protein2genome:local exon 61700 61795 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local splice5 61796 61797 . + . intron_id 1 ; splice_site "GT" KQ414777.1 exonerate:protein2genome:local intron 61796 61875 . + . intron_id 1 KQ414777.1 exonerate:protein2genome:local splice3 61874 61875 . + . intron_id 0 ; splice_site "ag" KQ414777.1 exonerate:protein2genome:local cds 61876 61980 . + . KQ414777.1 exonerate:protein2genome:local exon 61876 61980 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local splice5 61981 61982 . + . intron_id 2 ; splice_site "GT" KQ414777.1 exonerate:protein2genome:local intron 61981 62100 . + . intron_id 2 KQ414777.1 exonerate:protein2genome:local splice3 62099 62100 . + . intron_id 1 ; splice_site "AG" KQ414777.1 exonerate:protein2genome:local cds 62101 62256 . + . KQ414777.1 exonerate:protein2genome:local exon 62101 62256 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local splice5 62257 62258 . + . intron_id 3 ; splice_site "GT" KQ414777.1 exonerate:protein2genome:local intron 62257 63080 . + . intron_id 3 KQ414777.1 exonerate:protein2genome:local splice3 63079 63080 . + . intron_id 2 ; splice_site "AG" KQ414777.1 exonerate:protein2genome:local cds 63081 63125 . + . KQ414777.1 exonerate:protein2genome:local exon 63081 63125 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 61700 63125 445 + . alignment_id 2 ; Query AfOr170P ; Align 61700 263 96 ; Align 61876 295 105 ; Align 62101 330 156 ; Align 63081 382 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr165 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 87 -> 209 Target range: 44676 -> 45042 88 : PheCysAspIleLeuSerThrMetLysLysAspCysGlnLysTyrAlaValIleAspIle : 107 ||| ! :!: !||| !:!!||| ..!.!. ! !::::!..!:!!...! ! PheGlnAlaLeuLysSerLeuLeuLysCysMetAlaAspAspTrpSerThrValSerLys 44677 : ttccaaGCACTGAAATCTCTGCTGAAATGCATGGCCGACGATTGGAGCACAGTATCGAAA : 44734 108 : AsnAsnLeuIleSerLysThrGlyGlnIleSerPheTyrMetThrThrIleValMetSer : 127 !!.:!! !:!!..!! ! !.!!.!.|||:!! !! ! !! !! !:!!!!:||| LysAspAspLeuAspThrMetSerAsnIleAlaArgIleThrArgLysThrIleIleSer 44735 : AAAGATGATCTAGACACCATGAGTAACATCGCAAGGATCACCAGAAAGACTATAATAAGC : 44794 128 : SerTyrLeuValSerAlaValPheTyrIleThrGlyThrLeuAlaPheGlnArgThrAsn : 147 ||| :!!:!!!!! !:!! ! !|||||| !! !!!! ! ! !|||!.. SerThrValLeuCysHisIleValValIleThrTyrIlePheLeuArgPheLeuThrArg 44795 : AGCACAGTGTTATGTCACATTGTGGTCATCACTTATATATTTCTACGATTCCTCACCAGG : 44854 148 : AspSerIleSerArgGluLeuLeuPheLysMetAspLeuProPheGluThrSerGluSer : 167 ! ! !! !.!!! !..!|||||||||::: !!!!!|||!:!!!:!:!..!! ||| LysTyrSerGlyThrArgLeuLeuPheArgAlaTyrPheProTyrAspSerAspValSer 44855 : AAGTACAGCGGCACCAGACTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGT : 44914 168 : ProAsnTyrGluPheValValThrSerGlnPheLeuIleHisValSerAlaAlaLeuThr : 187 |||||||||||||||..!|||! !:!!|||.!!:!! ! ! !!! !|||||| !||| ProAsnTyrGluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThr 44915 : CCAAATTACGAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACA : 44974 188 : PheGlyThrPheSerAlaLeuLeuLeuMetValValLeuHisIleGlyCysGlnIleAsp : 207 !:! !.!! !!..!.!!!!!:!!:!!|||:!!:!!||||||:!! !! ! |||:!!... TyrThrAlaValAspThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeuSer 44975 : TACACAGCCGTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCG : 45034 208 : IleLeu : 209 ! !||| AsnLeu 45035 : AATTTG : 45042 vulgar: AfOr165 87 209 . KQ414804.1 44676 45042 + 110 M 122 366 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44677 45042 110 + . gene_id 1 ; sequence AfOr165 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44677 45042 . + . KQ414804.1 exonerate:protein2genome:local exon 44677 45042 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44677 45042 110 + . alignment_id 1 ; Query AfOr165 ; Align 44677 88 366 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr165 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 124 -> 209 Target range: 36677 -> 36932 125 : ValMetSerSerTyrLeuValSerAlaValPheTyrIleThrGlyThrLeuAlaPheGln : 144 :!!:!!!!!! ! !:!!|||! !||| !!!!.! :!! ! ! ! !::!.!.||| IleLeuThrTyrValMetValLeuAlaPheLeuSerLeuGlnIleTrpSerSerMetGln 36678 : ATCCTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGCAGCATGCAA : 36735 145 : ArgThrAsnAspSerIleSerArgGluLeuLeuPheLysMetAspLeuProPheGluThr : 164 !.!|||:::!!:! !! ! ! !!! !||||||.!! ! !!!|||!:!!!:||| AsnThrSerGluPheAsnValGlyGlyLeuLeuIleProAlaThrPheProTyrAspThr 36736 : AACACCTCGGAGTTCAACGTAGGAGGACTACTTATCCCGGCCACATTTCCATACGACACG : 36795 165 : SerGluSerProAsnTyrGluPheValValThrSerGlnPheLeuIleHisValSerAla : 184 !:!:!!|||||||||||||||.!!..! ! !.!!||||||:!! |||! !::! AsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrValLeuSer 36796 : AATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGC : 36855 185 : AlaLeuThrPheGlyThrPheSerAlaLeuLeuLeuMetValValLeuHisIleGlyCys : 204 |||:!! !!:!..! !|||..!.!!!!!:!! !:!::!!|||||||||||| !! !! AlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHisIleCysGly 36856 : GCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGC : 36915 205 : GlnIleAspIleLeu : 209 |||:!! !:!!||| GlnLeuThrValLeu 36916 : CAATTAACTGTTCTC : 36932 vulgar: AfOr165 124 209 . KQ414804.1 36677 36932 + 104 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36678 36932 104 + . gene_id 2 ; sequence AfOr165 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36678 36932 . + . KQ414804.1 exonerate:protein2genome:local exon 36678 36932 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36678 36932 104 + . alignment_id 2 ; Query AfOr165 ; Align 36678 125 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr136like_1 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 234 Query range: 86 -> 215 Target range: 439997 -> 440711 87 : MetIleLysLeuLeuPheArgHisIleArgMetGluGluSerMetValGlnAspSerI : 106 ..!:!!|||!!!:!!|||..! !|||!:!! !!:! !! !! !:!!|||||||||! GlnValLysPheIlePheGluCysIleGlnThrAspValTyrThrLeuGlnAspSerA 439998 : CAGGTCAAGTTTATCTTTGAGTGTATACAGACAGATGTATATACGCTACAAGATTCGA : 440055 107 : leGluThrGlnIleArgThrLysTyrIleAspAspSerCysHisMetIleAspIlePh : 125 !|||! !:!!|||! !||||||||||||||||||||| !!!..!!:||| ||||| snGluMetLysIleLeuThrLysTyrIleAspAspSerSerArgIleIleThrIlePh 440056 : ACGAGATGAAGATACTAACGAAATATATCGATGATTCAAGTCGAATaatcacaatttt : 440112 126 : ePhe{T} >>>> Target Intron 1 >>>> {rp}IleIleTyrThrThrThr : 133 |...{!} 327 bp {::} !||| ! !! ! eLeu{T}++ ++{yr}AlaAlaTyrPheGlyIle 440113 : ccta{t}gt.........................ag{AT}GCGGCTTACTTTGGGATC : 440463 134 : AlaPheCysSerIleSerLeuLeuTyrProIleThrLeuAspPheIleAsnProLeuA : 153 .!!.!! ! !! !!!||||||||||||:!!:!!:!!|||.!.:!! ||||||| ThrIleThrValThrThrLeuLeuTyrProValSerMetAspLeuLeuValProLeuA 440464 : ACAATTACCGTGACGACATTATTATACCCAGTATCAATGGATCTGTTAGTACCATTGA : 440523 154 : snGluSerArgThrArgIleIleHisTyrPheThrMetPheSerHisHisArgIleIl : 172 ||:!!|||||| !!||| !:!! |||||| :::... !:!!!:!||| snLysSerArgProArgTyrLeuGlyTyrPhePheIleLeuProSerAsnGlnIleGl 440524 : ACAAATCCAGACCTCGTTATCTTGGctacttttttattcttccctCTAATCAAATACA : 440580 173 : eTyrIleAspIleLeuCysLeuAsnTyrValPheValAlaIleIleSerSerLeuSer : 191 |||||||||.!!:!! !!! !! ..!!!.||| !!.!!:!:.!!! !|||!!! nTyrIleAspPheMetThrPheTyrGlyThrLeuValProPheValGlyLeuLeuThr 440581 : GTATATTGATTTTATGACATTTTATGGGACATTAGTTCCCTTTGTGGGATTATTAACT : 440637 192 : ValThrCysThrGluSerIlePheGlyLeuTyrSerTyrHisIleSerValLeuPheL : 211 ||||||||||||||||||:!!.!!.!!:!! !:!! :!!:!:||| !|||!:!| ValThrCysThrGluSerLeuLeuSerIleIleAlaMetTyrValSerSerLeuTyrL 440638 : GTAACATGCACGGAATCGCTTCTTAGTATTATCGCAATGTATGTGAGCAGTTTATATA : 440697 212 : ysIleIleGlyTyr : 215 |||||! !|||||| ysIleThrGlyTyr 440698 : AGATTACTGGGTAC : 440711 vulgar: AfOr136like_1 86 215 . KQ414815.1 439997 440711 + 234 M 40 120 S 0 1 5 0 2 I 0 323 3 0 2 S 1 2 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439998 440711 234 + . gene_id 1 ; sequence AfOr136like_1 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 439998 440118 . + . KQ414815.1 exonerate:protein2genome:local exon 439998 440118 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 440119 440120 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 440119 440445 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 440444 440445 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 440446 440711 . + . KQ414815.1 exonerate:protein2genome:local exon 440446 440711 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 439998 440711 234 + . alignment_id 1 ; Query AfOr136like_1 ; Align 439998 87 120 ; Align 440448 128 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr136like_1 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 138 -> 215 Target range: 444592 -> 444823 139 : SerLeuLeuTyrProIleThrLeuAspPheIleAsnProLeuAsnGluSerArgThrA : 158 !!!||||||||||||:!!:!!:!!|||.!.:!! |||||||||.!.|||||| !!| ThrLeuLeuTyrProValSerMetAspLeuLeuValProLeuAsnAsnSerArgProA 444593 : ACATTATTATACCCAGTATCAATGGATCTGTTAGTACCTTTGAACAATTCCAGACCTC : 444650 159 : rgIleIleHisTyrPheThrMetPheSerHisHisArgIleIleTyrIleAspIleLe : 177 || !:!! !||||||..!!!:.!! !! !:!!!:!||| |||||||||.!!:! rgTyrLeuGlyTyrPheValIleLeuProSerAsnGlnIleGlnTyrIleAspPheMe 444651 : GTTATCTTGGCTACTTTGTTATTCTTCCCTCTAATCAAATACAGTATATTGATTTTAT : 444707 178 : uCysLeuAsnTyrValPheValAlaIleIleSerSerLeuSerValThrCysThrGlu : 196 ! !!! !! ..!!!.||| !!.!!:!:.!!! !|||!!!|||.!!||||||||| tThrPheTyrGlyThrLeuValProPheValGlyLeuLeuThrValAlaCysThrGlu 444708 : GACATTTTATGGGACATTAGTTCCCTTTGTGGGATTATTAACTGTAGCATGCACGGAA : 444764 197 : SerIlePheGlyLeuTyrSerTyrHisIleSerValLeuPheLysIleIleGlyTyr : 215 |||:!!.!!.!!:!! !:!! :!!:!:!!! !|||!:!||||||! !|||||| SerLeuLeuSerIleSerAlaMetTyrLeuCysSerLeuTyrLysIleThrGlyTyr 444765 : TCGCTTCTTAGTATTAGCGCAATGTATCTGTGCAGTTTATATAAGATTACTGGGTAC : 444823 vulgar: AfOr136like_1 138 215 . KQ414815.1 444592 444823 + 158 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 444593 444823 158 + . gene_id 2 ; sequence AfOr136like_1 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 444593 444823 . + . KQ414815.1 exonerate:protein2genome:local exon 444593 444823 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 444593 444823 158 + . alignment_id 2 ; Query AfOr136like_1 ; Align 444593 139 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr136like_1 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 0 -> 51 Target range: 443381 -> 443534 1 : MetAspValPheAspLysHisTyrHisThrTyrArgIleValLeuLysIleIleGlyL : 20 ||||||||||||:!!|||!!.|||...|||||||||:!!:!!|||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 443382 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGTTAGGAC : 443439 21 : euTrpProTyrAsnAsnSerIleTyrValTrpIleGlnArgLeuTrpLeuLeuIlePh : 39 |||||||||||::!.!.||||||||| ! |||!!.|||:!!! !!!! !! .! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 443440 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 443496 40 : eIleLeuGlyAsnIleIlePheGlnIleValSerLeu : 51 !||||||..! !|||||||||:!!:!::!!..!:!! eIleLeuSerCysIleIlePheGluValMetGlnIle 443497 : TATACTTTCGTGTATTATATTTGAGGTGATGCAAATA : 443534 vulgar: AfOr136like_1 0 51 . KQ414815.1 443381 443534 + 142 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 443382 443534 142 + . gene_id 3 ; sequence AfOr136like_1 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 443382 443534 . + . KQ414815.1 exonerate:protein2genome:local exon 443382 443534 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 443382 443534 142 + . alignment_id 3 ; Query AfOr136like_1 ; Align 443382 1 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr136like_1 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 0 -> 51 Target range: 439271 -> 439424 1 : MetAspValPheAspLysHisTyrHisThrTyrArgIleValLeuLysIleIleGlyL : 20 ||||||||||||:!!|||!!.|||...|||||||||:!!:!!|||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 439272 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGCTAGGAC : 439329 21 : euTrpProTyrAsnAsnSerIleTyrValTrpIleGlnArgLeuTrpLeuLeuIlePh : 39 |||||||||||::!.!.||||||||| ! |||!!.|||:!!! !!!! !! .! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 439330 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 439386 40 : eIleLeuGlyAsnIleIlePheGlnIleValSerLeu : 51 !!!:|||..! !|||||||||:!!:!::!!..!:!! eMetLeuSerCysIleIlePheGluValMetGlnIle 439387 : TATGCTTTCGTGTATTATATTTGAGGTGATGCAAATA : 439424 vulgar: AfOr136like_1 0 51 . KQ414815.1 439271 439424 + 139 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439272 439424 139 + . gene_id 4 ; sequence AfOr136like_1 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 439272 439424 . + . KQ414815.1 exonerate:protein2genome:local exon 439272 439424 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 439272 439424 139 + . alignment_id 4 ; Query AfOr136like_1 ; Align 439272 1 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr136like_1 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 297 -> 377 Target range: 489871 -> 490344 298 : LeuIleSerPheIleValGlnLeuIleIleIlePheIleCysAsnTyrAsnSerGlnI : 317 ||| !..!!!. !:!!||||||.!! !||||||||||||||||||! !.!!||| LeuProAspLeuCysLeuGlnLeuPheTyrIlePheIleCysAsnTyrIleGlyGlnG 489872 : CTTCCTGATTTGTGTCTGCAGTTGTTTTACATATTCATTTGCAATTATATTGGACAGG : 489929 318 : leLeuIleAsnAsnSerGluGluLeuPheHisGlu{Le} >>>> Target Intro : 329 ::: ||| |||...|||:!!|||:!!!!:{:!} 230 bp lyValLysAsnCysSerSerGluValPheTyrAsp{Il}++ 489930 : GagtaaaaaattgcagttcTGAGGTATTTTATGAC{AT}gt................. : 489969 330 : n 1 >>>> {u}TyrIleSer<->ThrTrpTyrPheValProLeuLysValGlnLys : 343 {!}! !! !||| !.!|||||| !.!|||:!! :!!|||||| ++{e}CysAsnSerValAsnTrpTyrThrAlaProIleAlaIleGlnLys 489970 : ........ag{A}TGCAACAGCGTGAATTGGTACACGGCTCCAATTGCCATACAAAAA : 490240 344 : IleLeuLeuLeuIleMetIleArgSerSerThrThrCysMetIleHisIleLeuGlyV : 363 :!:||||||:!!|||||| !!.!!!!! ! !!.!! ! ||| :!!!!!|||: LeuLeuLeuIleIleMetGlnAsnThrIleArgAsnSerSerIleThrLeuPheGlyM 490241 : TTGCTGTTGATCATTATGCAAAATACTATACGAAATTCTTCAATAACACTCTTCGGAA : 490300 364 : alPheThrProCysHisAlaGlyPheSerThrMetLeuSerThr : 377 !!!:!! ! !!! ! !! !||||||! !! !:!: !!:!||| etTyrIleSerSerPheAspGlyPhePheMetValAsnAsnThr 490301 : TGTATATATCGTCTTTCGATGGTTTCTTCATGGTAAATAACAcg : 490344 vulgar: AfOr136like_1 297 377 . KQ414815.1 489871 490344 + 100 M 31 93 S 0 2 5 0 2 I 0 226 3 0 2 S 1 1 M 3 9 G 0 3 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 489872 490344 100 + . gene_id 5 ; sequence AfOr136like_1 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 489872 489966 . + . KQ414815.1 exonerate:protein2genome:local exon 489872 489966 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 489967 489968 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 489967 490196 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 490195 490196 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 490197 490344 . + . KQ414815.1 exonerate:protein2genome:local exon 490197 490344 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 489872 490344 100 + . alignment_id 5 ; Query AfOr136like_1 ; Align 489872 298 93 ; Align 490198 330 9 ; Align 490210 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr138P Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 340 Query range: 0 -> 221 Target range: 443381 -> 444841 1 : MetAspValPheAspLysHisTyrArgThrTyrArgThrValLeuLysIleLeuGlyL : 20 ||||||||||||:!!|||!!.||||||||||||||| !:!!|||...:!:||||||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 443382 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGTTAGGAC : 443439 21 : euTrpProTyrAsnAsnSerValTyrValTrpIleGlnArgLeuLeuLeuLeuThrLe : 39 |||||||||||::!.!.|||:!!||| ! |||!!.|||:!!! !!!! !|||:! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 443440 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 443496 40 : uTyrLeuGlyAsnValIlePheGln >>>> Target Intron 1 >>>> IleV : 49 ! |||..! !:!!||||||:!! 395 bp |||! eIleLeuSerCysIleIlePheGlu++ ++IleA 443497 : TATACTTTCGTGTATTATATTTGAGgt.........................agATAG : 443921 50 : alSerLeuLeuArgSerGluIleThrLeuArgAsnCysIleLeuIleLeuSerThrTh : 68 .!!!!|||:!! !! !|||! !.!!! ...||| ::: !! !! !..! laThrLeuValSerPheGluArgAlaSerGluAsnIleLeuGlnThrCysPheValCy 443922 : CGACACTCGTTTCTTTTGAAAGAGCATCggaaaatattcttcagaCTTGTTTCGTATG : 443978 69 : rCysProLeuIleIleThrLeuLeuArgTyrIleSerPheIleIlePhePheProMet : 87 ! ! !|||:!::!! !!!! !||||||:!!||||||||| ! !||||||.!. sProLeuLeuValLeuPhePheGluArgTyrValSerPheIleCysAsnPheProPhe 443979 : TCCTTTGCTCGTGTTATTCTTCGAGCGATACGTTTCATTCATCTGTAACTTTCCATTT : 444035 88 : >>>> Target Intron 2 >>>> IleLysHisLeuPheGlnHisIleAspMe : 97 73 bp :!!||| !:!!|||:!! !|||.!.! ++ ++ValLysSerIlePheGluCysIleGlnTh 444036 : gt.........................agGTCAAGTCTATCTTTGAGTGTATACAGAC : 444138 98 : tGluGluSerIleIleGlnAspSerValGluArgArgIleArgThrLysTyrIleAsp : 116 !!:! !! !! :!!||||||||| !|||! !!:!|||! !||||||||||||||| rAspValTyrThrLeuGlnAspSerAsnGluMetLysIleLeuThrLysTyrIleAsp 444139 : AGATGTATATACGCTACAAGATTCGAACGAGATGAAGATACTAACGAAATATATCGAT : 444195 117 : AspSerCysHisMetIleGluIlePheLeu{T} >>>> Target Intron 3 >> : 127 |||||| !!!..!!:||| |||||||||{!} 329 bp AspSerSerArgIleIleThrIlePheLeu{T}++ 444196 : GATTCAAGTCGAATaatcacaattttccta{t}gt....................... : 444231 128 : >> {rp}IleThrTyrThrThrIleAlaPheTyrGlyMetLeuLeuLeuTyrProIl : 144 {::} .!!||| ! !|||.!!.!! !! !! ! !||||||||||||:! ++{yr}AlaAlaTyrPheGlyIleThrIleIleValThrThrLeuLeuTyrProVa 444232 : ..ag{AT}GCGGCTTACTTTGGGATCACAATTATCGTGACGACATTATTATACCCAGT : 444608 145 : eIleLeuAspLeuIleMetProPheAsnGluSerArgMetTyrAsnTyrHisTyrPhe : 163 ! !:!!||||||:!!:!:|||!!.|||.!.|||||| ! !! ! !|||||| lSerMetAspLeuLeuValProLeuAsnAsnSerArgProArgTyrLeuGlyTyrPhe 444609 : ATCAATGGATCTGTTAGTACCTTTGAACAATTCCAGACCTCGTTATCTTGGCTACTTT : 444665 164 : ThrLeuPheSerValAsnArgThrIleUnkPheTyrIleLeuCysLeuAspTyrIleP : 183 ..!:!!.!! !! !|||!:!! ! .!! !!.!!:!! !!! !! ! !! ValIleLeuProSerAsnGlnIleGlnTyrIleAspPheMetThrPheTyrGlyThrL 444666 : GTTATTCTTCCCTCTAATCAAATACAGTATATTGATTTTATGACATTTTATGGGACAT : 444725 184 : heValIleThrPheGlyLeuLeuSerIleLeuCysThrGluSerIleIleGlyLeuCy : 202 !.||| ! ! ! |||||||||!!!:!! !||||||||||||:!!:!!.!!:!! ! euValProPheValGlyLeuLeuThrValAlaCysThrGluSerLeuLeuSerIleSe 444726 : TAGTTCCCTTTGTGGGATTATTAACTGTAGCATGCACGGAATCGCTTCTTAGTATTAG : 444782 203 : sSerTyrHisAlaGlyValLeuPheLysIleIleSerHisArgIleGlnLysIleIle : 221 !:!! :!! ! !! !|||!:!||||||! !.!!:!! ! !||| ! !||| rAlaMetTyrLeuCysSerLeuTyrLysIleThrGlyTyrValSerGlnTyrTyrIle 444783 : CGCAATGTATCTGTGCAGTTTATATAAGATTACTGGGTACGTATCTCAATACTATatc : 444839 vulgar: AfOr138P 0 221 . KQ414815.1 443381 444841 + 340 M 47 141 5 0 2 I 0 391 3 0 2 M 40 120 5 0 2 I 0 69 3 0 2 M 39 117 S 0 1 5 0 2 I 0 325 3 0 2 S 1 2 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 443382 444841 340 + . gene_id 1 ; sequence AfOr138P ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 443382 443522 . + . KQ414815.1 exonerate:protein2genome:local exon 443382 443522 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 443523 443524 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 443523 443917 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 443916 443917 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 443918 444037 . + . KQ414815.1 exonerate:protein2genome:local exon 443918 444037 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 444038 444039 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 444038 444110 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 444109 444110 . + . intron_id 1 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 444111 444228 . + . KQ414815.1 exonerate:protein2genome:local exon 444111 444228 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 444229 444230 . + . intron_id 3 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 444229 444557 . + . intron_id 3 KQ414815.1 exonerate:protein2genome:local splice3 444556 444557 . + . intron_id 2 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 444558 444841 . + . KQ414815.1 exonerate:protein2genome:local exon 444558 444841 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 443382 444841 340 + . alignment_id 1 ; Query AfOr138P ; Align 443382 1 141 ; Align 443918 48 120 ; Align 444111 88 117 ; Align 444560 128 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr138P Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 333 Query range: 0 -> 215 Target range: 439271 -> 440711 1 : MetAspValPheAspLysHisTyrArgThrTyrArgThrValLeuLysIleLeuGlyL : 20 ||||||||||||:!!|||!!.||||||||||||||| !:!!|||...:!:||||||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 439272 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGCTAGGAC : 439329 21 : euTrpProTyrAsnAsnSerValTyrValTrpIleGlnArgLeuLeuLeuLeuThrLe : 39 |||||||||||::!.!.|||:!!||| ! |||!!.|||:!!! !!!! !|||:! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 439330 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 439386 40 : uTyrLeuGlyAsnValIlePheGln >>>> Target Intron 1 >>>> IleV : 49 ! |||..! !:!!||||||:!! 395 bp |||! eMetLeuSerCysIleIlePheGlu++ ++IleA 439387 : TATGCTTTCGTGTATTATATTTGAGgt.........................agATAG : 439811 50 : alSerLeuLeuArgSerGluIleThrLeuArgAsnCysIleLeuIleLeuSerThrTh : 68 .!!!!|||:!! !! !|||! !.!!! ...||| ::: !! !! !..! laThrLeuValSerPheGluArgAlaSerGluAsnIleLeuGlnThrCysPheValCy 439812 : CGACACTCGTTTCTTTTGAAAGAGCATCggaaaatattcttcagaCTTGTTTCGTATG : 439868 69 : rCysProLeuIleIleThrLeuLeuArgTyrIleSerPheIleIlePhePheProMet : 87 ! ! !|||:!::!! !!!! !||||||:!!||||||||| ! !|||! !.!. sProLeuLeuValLeuPhePheGluArgTyrValSerPheIleCysAsnPheGlnPhe 439869 : TCCTTTGCTCGTGTTATTCTTCGAGCGATACGTTTCATTCATCTGTAACTTTCAATTT : 439925 88 : >>>> Target Intron 2 >>>> IleLysHisLeuPheGlnHisIleAspMe : 97 73 bp :!!||| !:!!|||:!! !|||.!.! ++ ++ValLysPheIlePheGluCysIleGlnTh 439926 : gt.........................agGTCAAGTTTATCTTTGAGTGTATACAGAC : 440028 98 : tGluGluSerIleIleGlnAspSerValGluArgArgIleArgThrLysTyrIleAsp : 116 !!:! !! !! :!!||||||||| !|||! !!:!|||! !||||||||||||||| rAspValTyrThrLeuGlnAspSerAsnGluMetLysIleLeuThrLysTyrIleAsp 440029 : AGATGTATATACGCTACAAGATTCGAACGAGATGAAGATACTAACGAAATATATCGAT : 440085 117 : AspSerCysHisMetIleGluIlePheLeu{T} >>>> Target Intron 3 >> : 127 |||||| !!!..!!:||| |||||||||{!} 327 bp AspSerSerArgIleIleThrIlePheLeu{T}++ 440086 : GATTCAAGTCGAATaatcacaattttccta{t}gt....................... : 440121 128 : >> {rp}IleThrTyrThrThrIleAlaPheTyrGlyMetLeuLeuLeuTyrProIl : 144 {::} .!!||| ! !|||.!!.!! !! !! ! !||||||||||||:! ++{yr}AlaAlaTyrPheGlyIleThrIleThrValThrThrLeuLeuTyrProVa 440122 : ..ag{AT}GCGGCTTACTTTGGGATCACAATTACCGTGACGACATTATTATACCCAGT : 440496 145 : eIleLeuAspLeuIleMetProPheAsnGluSerArgMetTyrAsnTyrHisTyrPhe : 163 ! !:!!||||||:!!:!:|||!!.|||:!!|||||| ! !! ! |||||| lSerMetAspLeuLeuValProLeuAsnLysSerArgProArgTyrLeuGlyTyrPhe 440497 : ATCAATGGATCTGTTAGTACCATTGAACAAATCCAGACCTCGTTATCTTGGctacttt : 440553 164 : ThrLeuPheSerValAsnArgThrIleUnkPheTyrIleLeuCysLeuAspTyrIleP : 183 :::... !|||!:!! ! .!! !!.!!:!! !!! !! ! !! PheIleLeuProSerAsnGlnIleGlnTyrIleAspPheMetThrPheTyrGlyThrL 440554 : tttattcttccctCTAATCAAATACAGTATATTGATTTTATGACATTTTATGGGACAT : 440613 184 : heValIleThrPheGlyLeuLeuSerIleLeuCysThrGluSerIleIleGlyLeuCy : 202 !.||| ! ! ! |||||||||!!!:!! !||||||||||||:!!:!!.!!:!! euValProPheValGlyLeuLeuThrValThrCysThrGluSerLeuLeuSerIleIl 440614 : TAGTTCCCTTTGTGGGATTATTAACTGTAACATGCACGGAATCGCTTCTTAGTATTAT : 440670 203 : sSerTyrHisAlaGlyValLeuPheLysIleIleSerHis : 215 !:!! :!!!.!.!! !|||!:!||||||! !.!!:!! eAlaMetTyrValSerSerLeuTyrLysIleThrGlyTyr 440671 : CGCAATGTATGTGAGCAGTTTATATAAGATTACTGGGTAC : 440711 vulgar: AfOr138P 0 215 . KQ414815.1 439271 440711 + 333 M 47 141 5 0 2 I 0 391 3 0 2 M 40 120 5 0 2 I 0 69 3 0 2 M 39 117 S 0 1 5 0 2 I 0 323 3 0 2 S 1 2 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439272 440711 333 + . gene_id 2 ; sequence AfOr138P ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 439272 439412 . + . KQ414815.1 exonerate:protein2genome:local exon 439272 439412 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 439413 439414 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 439413 439807 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 439806 439807 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 439808 439927 . + . KQ414815.1 exonerate:protein2genome:local exon 439808 439927 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 439928 439929 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 439928 440000 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 439999 440000 . + . intron_id 1 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 440001 440118 . + . KQ414815.1 exonerate:protein2genome:local exon 440001 440118 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 440119 440120 . + . intron_id 3 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 440119 440445 . + . intron_id 3 KQ414815.1 exonerate:protein2genome:local splice3 440444 440445 . + . intron_id 2 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 440446 440711 . + . KQ414815.1 exonerate:protein2genome:local exon 440446 440711 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 439272 440711 333 + . alignment_id 2 ; Query AfOr138P ; Align 439272 1 141 ; Align 439808 48 120 ; Align 440001 88 117 ; Align 440448 128 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr138P Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 332 -> 391 Target range: 458543 -> 458798 333 : TyrIleSerValTrpTyrPheValProLeuLysValGlnLysIleLeuLeuLeuIleM : 352 |||:!:! ! !|||||| !!.!||||||::!:!!|||||| !||||||!!!||| TyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleS 458544 : TACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATAT : 458601 353 : etThrArgSerSerThrThrCysAlaPheHisIleLeuGlyValPheValProCysTy : 371 !||||||!.!! !..! !!:!!!!. !!!:! !|||:!!.!!:!! ! :: erGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPh 458602 : CAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatcctt : 458658 372 : rAlaGlyPheIleThr >>>> Target Intron 1 >>>> MetLeuSerThrS : 381 : ||| ||| 78 bp .!.:!!!.!.!!: eGluPhePheAlaThr++ ++PheMetLysAlaA 458659 : cgaatttttcgccaCGgt.........................agTTCATGAAAGCAG : 458766 382 : erPheSerTyrPheThrValIleTyrSerIle : 391 !!.!.||||||! !||||||:!!||||||||| laMetSerTyrCysThrValLeuTyrSerIle 458767 : CGATGTCCTATTGCACGGTATTATATTCCATC : 458798 vulgar: AfOr138P 332 391 . KQ414815.1 458543 458798 + 102 M 44 132 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458544 458798 102 + . gene_id 3 ; sequence AfOr138P ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 458544 458675 . + . KQ414815.1 exonerate:protein2genome:local exon 458544 458675 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 458676 458677 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 458676 458753 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 458752 458753 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458754 458798 . + . KQ414815.1 exonerate:protein2genome:local exon 458754 458798 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458544 458798 102 + . alignment_id 3 ; Query AfOr138P ; Align 458544 333 132 ; Align 458754 377 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr137/138P Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 130 -> 216 Target range: 440453 -> 440711 131 : TyrAlaThrValAlaLeuSerSerLeuPheIleLeuTyrProIleThrLeuAspPheI : 150 ||| ! !:!!.!!:!!!!! ! ! :!!|||||||||:!!:!!:!!|||.!.: TyrPheGlyIleThrIleThrValThrThrLeuLeuTyrProValSerMetAspLeuL 440454 : TACTTTGGGATCACAATTACCGTGACGACATTATTATACCCAGTATCAATGGATCTGT : 440511 151 : leMetProLeuAsnGluSerArgIleArgIleIleHisTyrIleThrIlePheSerTy : 169 !!:!:|||||||||:!!|||||| !||| !:!! |||... |||... euValProLeuAsnLysSerArgProArgTyrLeuGlyTyrPhePheIleLeuProSe 440512 : TAGTACCATTGAACAAATCCAGACCTCGTTATCTTGGctacttttttattcttccctC : 440568 170 : rAsnArgThrIleTyrValAspIleLeuSerLeuAsnPheMetPheValGlyIlePhe : 188 !|||!:!! ! |||:!!|||.!!:!!!!!!!! !! ! !!.||| !.!! ! rAsnGlnIleGlnTyrIleAspPheMetThrPheTyrGlyThrLeuValProPheVal 440569 : TAATCAAATACAGTATATTGATTTTATGACATTTTATGGGACATTAGTTCCCTTTGTG : 440625 189 : GlySerLeuSerIleThrCysThrGluSerIlePheGlyLeuTyrSerPheHisThrS : 208 |||! !|||!!!:!!|||||||||||||||:!!.!!.!!:!! !:!!.!.:!!..!| GlyLeuLeuThrValThrCysThrGluSerLeuLeuSerIleIleAlaMetTyrValS 440626 : GGATTATTAACTGTAACATGCACGGAATCGCTTCTTAGTATTATCGCAATGTATGTGA : 440685 209 : erMetLeuPheLysIleIleGlyTyr : 216 ||! |||!:!||||||! !|||||| erSerLeuTyrLysIleThrGlyTyr 440686 : GCAGTTTATATAAGATTACTGGGTAC : 440711 vulgar: AfOr137/138P 130 216 . KQ414815.1 440453 440711 + 167 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 440454 440711 167 + . gene_id 1 ; sequence AfOr137/138P ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 440454 440711 . + . KQ414815.1 exonerate:protein2genome:local exon 440454 440711 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 440454 440711 167 + . alignment_id 1 ; Query AfOr137/138P ; Align 440454 131 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr137/138P Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 0 -> 88 Target range: 443381 -> 444040 1 : MetAspValPheAspLysAsnTyrTyrThrTyrArgThrValMetLysIleValGlyL : 20 ||||||||||||:!!|||.!.||| ||||||||| !:!!:!:...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 443382 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGTTAGGAC : 443439 21 : euTrpProTyrAsnAsnSerIleTyrValTrpIleGlnArgLeuTrpLeuPheThrPh : 39 |||||||||||::!.!.||||||||| ! |||!!.|||:!!! !!!! !|||.! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 443440 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 443496 40 : ePheLeuGlyAsnIleIlePheGln >>>> Target Intron 1 >>>> IleV : 49 !.!.|||..! !|||||||||:!! 395 bp |||! eIleLeuSerCysIleIlePheGlu++ ++IleA 443497 : TATACTTTCGTGTATTATATTTGAGgt.........................agATAG : 443921 50 : alSerLeuLeuAsnSerGluIleThrLeuGlnLysCysIleLeuIleLeuSerThrIl : 68 .!!!!|||:!!::!! !|||! !.!!! :::... ::: !! !! !..! laThrLeuValSerPheGluArgAlaSerGluAsnIleLeuGlnThrCysPheValCy 443922 : CGACACTCGTTTCTTTTGAAAGAGCATCggaaaatattcttcagaCTTGTTTCGTATG : 443978 69 : ePheProLeuThrIleValLeuLeuArgTyrValSerPheIleIlePhePheProMet : 87 ! ! !|||..!:!! !!!!! !|||||||||||||||||| ! !||||||.!. sProLeuLeuValLeuPhePheGluArgTyrValSerPheIleCysAsnPheProPhe 443979 : TCCTTTGCTCGTGTTATTCTTCGAGCGATACGTTTCATTCATCTGTAACTTTCCATTT : 444035 88 : Ile : 88 :!! Val 444036 : GTA : 444040 vulgar: AfOr137/138P 0 88 . KQ414815.1 443381 444040 + 149 M 47 141 5 0 2 I 0 391 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 443382 444040 149 + . gene_id 2 ; sequence AfOr137/138P ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 443382 443522 . + . KQ414815.1 exonerate:protein2genome:local exon 443382 443522 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 443523 443524 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 443523 443917 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 443916 443917 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 443918 444040 . + . KQ414815.1 exonerate:protein2genome:local exon 443918 444040 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 443382 444040 149 + . alignment_id 2 ; Query AfOr137/138P ; Align 443382 1 141 ; Align 443918 48 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr137/138P Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 0 -> 88 Target range: 439271 -> 439930 1 : MetAspValPheAspLysAsnTyrTyrThrTyrArgThrValMetLysIleValGlyL : 20 ||||||||||||:!!|||.!.||| ||||||||| !:!!:!:...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 439272 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGCTAGGAC : 439329 21 : euTrpProTyrAsnAsnSerIleTyrValTrpIleGlnArgLeuTrpLeuPheThrPh : 39 |||||||||||::!.!.||||||||| ! |||!!.|||:!!! !!!! !|||.! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 439330 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 439386 40 : ePheLeuGlyAsnIleIlePheGln >>>> Target Intron 1 >>>> IleV : 49 !.!.|||..! !|||||||||:!! 395 bp |||! eMetLeuSerCysIleIlePheGlu++ ++IleA 439387 : TATGCTTTCGTGTATTATATTTGAGgt.........................agATAG : 439811 50 : alSerLeuLeuAsnSerGluIleThrLeuGlnLysCysIleLeuIleLeuSerThrIl : 68 .!!!!|||:!!::!! !|||! !.!!! :::... ::: !! !! !..! laThrLeuValSerPheGluArgAlaSerGluAsnIleLeuGlnThrCysPheValCy 439812 : CGACACTCGTTTCTTTTGAAAGAGCATCggaaaatattcttcagaCTTGTTTCGTATG : 439868 69 : ePheProLeuThrIleValLeuLeuArgTyrValSerPheIleIlePhePheProMet : 87 ! ! !|||..!:!! !!!!! !|||||||||||||||||| ! !|||! !.!. sProLeuLeuValLeuPhePheGluArgTyrValSerPheIleCysAsnPheGlnPhe 439869 : TCCTTTGCTCGTGTTATTCTTCGAGCGATACGTTTCATTCATCTGTAACTTTCAATTT : 439925 88 : Ile : 88 :!! Val 439926 : GTA : 439930 vulgar: AfOr137/138P 0 88 . KQ414815.1 439271 439930 + 141 M 47 141 5 0 2 I 0 391 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439272 439930 141 + . gene_id 3 ; sequence AfOr137/138P ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 439272 439412 . + . KQ414815.1 exonerate:protein2genome:local exon 439272 439412 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 439413 439414 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 439413 439807 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 439806 439807 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 439808 439930 . + . KQ414815.1 exonerate:protein2genome:local exon 439808 439930 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 439272 439930 141 + . alignment_id 3 ; Query AfOr137/138P ; Align 439272 1 141 ; Align 439808 48 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr137/138P Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 333 -> 378 Target range: 483211 -> 483346 334 : TyrIleSerMetTrpTyrPheValProLeuLysValGlnLysIleLeuLeuLeuIleM : 353 |||! !!:!! |||||| ..! !!:!! :!!||||||:!!||||||:!!|||| TyrSerAsnAsnTrpTyrGluThrSerIleProLeuGlnLysLeuLeuLeuIleIleM 483212 : TACAGCAATAATTGGTACGAAACGTCCATACCCCTGCAGAAATTACTGTTGATCATCA : 483269 354 : etIleArgSerSerThrAlaCysMetPheHisIlePheGlyValPheThrProCysTy : 372 ||!!:||||||! ! !::!|||! !:! !!.!!|||||| !!!:!||| !!! etMetArgSerIleAspSerCysSerTyrAspPhePheGlyPheTyrThrAlaSerIl 483270 : TGATGAGGAGCATCGATAGTTGCAGTTATGATTTCTTCGGTTTCTACACCGCTTCGAT : 483326 373 : rThrGlyPheSerLysIle : 378 ! !|||||||||! !:!! eGlnGlyPheSerThrVal 483327 : CCAAGGTTTCTCAACGGTA : 483346 vulgar: AfOr137/138P 333 378 . KQ414815.1 483211 483346 + 102 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 483212 483346 102 + . gene_id 4 ; sequence AfOr137/138P ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 483212 483346 . + . KQ414815.1 exonerate:protein2genome:local exon 483212 483346 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 483212 483346 102 + . alignment_id 4 ; Query AfOr137/138P ; Align 483212 334 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr134like_1 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 0 -> 90 Target range: 443381 -> 444046 1 : MetAspValPheAspThrHisTyrHisSerTyrArgThrValLeuLysIleIleGlyL : 20 ||||||||||||:!!! !!!.|||...!!!|||||| !:!!|||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 443382 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGTTAGGAC : 443439 21 : euTrpProTyrAsnAsnSerIleTyrValTrpIleGlnArgLeuLeuLeuPheThrPh : 39 |||||||||||::!.!.||||||||| ! |||!!.|||:!!! !!!! !|||.! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 443440 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 443496 40 : ePheLeuGlyAsnValIlePheGln >>>> Target Intron 1 >>>> IleV : 49 !.!.|||..! !:!!||||||:!! 395 bp |||! eIleLeuSerCysIleIlePheGlu++ ++IleA 443497 : TATACTTTCGTGTATTATATTTGAGgt.........................agATAG : 443921 50 : alSerLeuLeuArgSerLysIleThrLeuArgAsnCysThrLeuIleLeuSerThrTh : 68 .!!!!|||:!! !! !:!!! !.!!! ...||| !! !! !..! laThrLeuValSerPheGluArgAlaSerGluAsnIleLeuGlnThrCysPheValCy 443922 : CGACACTCGTTTCTTTTGAAAGAGCATCggaaaatattcttcagaCTTGTTTCGTATG : 443978 69 : rCysProLeuIleIleIleSerLeuArgTyrValSerPheIleIlePhePheProMet : 87 ! ! !|||:!::!!.!!! ! !|||||||||||||||||| ! !||||||.!. sProLeuLeuValLeuPhePheGluArgTyrValSerPheIleCysAsnPheProPhe 443979 : TCCTTTGCTCGTGTTATTCTTCGAGCGATACGTTTCATTCATCTGTAACTTTCCATTT : 444035 88 : IleLysHis : 90 :!!!..:!! ValSerAsn 444036 : GTAAGTAAC : 444046 vulgar: AfOr134like_1 0 90 . KQ414815.1 443381 444046 + 143 M 47 141 5 0 2 I 0 391 3 0 2 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 443382 444046 143 + . gene_id 1 ; sequence AfOr134like_1 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 443382 443522 . + . KQ414815.1 exonerate:protein2genome:local exon 443382 443522 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 443523 443524 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 443523 443917 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 443916 443917 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 443918 444046 . + . KQ414815.1 exonerate:protein2genome:local exon 443918 444046 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 443382 444046 143 + . alignment_id 1 ; Query AfOr134like_1 ; Align 443382 1 141 ; Align 443918 48 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr134like_1 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 0 -> 90 Target range: 439271 -> 439936 1 : MetAspValPheAspThrHisTyrHisSerTyrArgThrValLeuLysIleIleGlyL : 20 ||||||||||||:!!! !!!.|||...!!!|||||| !:!!|||...:!::!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 439272 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGCTAGGAC : 439329 21 : euTrpProTyrAsnAsnSerIleTyrValTrpIleGlnArgLeuLeuLeuPheThrPh : 39 |||||||||||::!.!.||||||||| ! |||!!.|||:!!! !!!! !|||.! euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 439330 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 439386 40 : ePheLeuGlyAsnValIlePheGln >>>> Target Intron 1 >>>> IleV : 49 !.!.|||..! !:!!||||||:!! 395 bp |||! eMetLeuSerCysIleIlePheGlu++ ++IleA 439387 : TATGCTTTCGTGTATTATATTTGAGgt.........................agATAG : 439811 50 : alSerLeuLeuArgSerLysIleThrLeuArgAsnCysThrLeuIleLeuSerThrTh : 68 .!!!!|||:!! !! !:!!! !.!!! ...||| !! !! !..! laThrLeuValSerPheGluArgAlaSerGluAsnIleLeuGlnThrCysPheValCy 439812 : CGACACTCGTTTCTTTTGAAAGAGCATCggaaaatattcttcagaCTTGTTTCGTATG : 439868 69 : rCysProLeuIleIleIleSerLeuArgTyrValSerPheIleIlePhePheProMet : 87 ! ! !|||:!::!!.!!! ! !|||||||||||||||||| ! !|||! !.!. sProLeuLeuValLeuPhePheGluArgTyrValSerPheIleCysAsnPheGlnPhe 439869 : TCCTTTGCTCGTGTTATTCTTCGAGCGATACGTTTCATTCATCTGTAACTTTCAATTT : 439925 88 : IleLysHis : 90 :!!!..:!! ValSerAsn 439926 : GTAAGTAAC : 439936 vulgar: AfOr134like_1 0 90 . KQ414815.1 439271 439936 + 135 M 47 141 5 0 2 I 0 391 3 0 2 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439272 439936 135 + . gene_id 2 ; sequence AfOr134like_1 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 439272 439412 . + . KQ414815.1 exonerate:protein2genome:local exon 439272 439412 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 439413 439414 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 439413 439807 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 439806 439807 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 439808 439936 . + . KQ414815.1 exonerate:protein2genome:local exon 439808 439936 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 439272 439936 135 + . alignment_id 2 ; Query AfOr134like_1 ; Align 439272 1 141 ; Align 439808 48 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr134like_1 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 279 -> 331 Target range: 441440 -> 441596 280 : AsnLeuHisArgLeuValAsnAlaIleIleAlaLysLysAspGlnLeuGluIleIleV : 299 ::!:!! !:!:!!|||!!.||||||:!:.!!! !!!.|||||||||||||||:!:: HisValSerGlnIleValLysAlaIleValThrMetAsnAspGlnLeuGluIleLeuL 441441 : caTGTTTCACAGATAGTAAAAGCAATAGTGACAATGAATGATCAATTGGAGATACTGT : 441498 300 : alSerPheIlePhePheValAsnGlnLeuValPheMetPhePheCysAsnArgSerAl : 318 !!|||.!!!!:.!! !! !|||!!.:!!||||||:!!|||||| !||| !:!!!. euSerIleMetIleValSerAsnHisIleValPheLeuPhePheAsnAsnTyrAlaGl 441499 : TAAGTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGG : 441555 319 : aGlnIleLeuIleAsnAsnSerGluGluPhePheHisGlu : 331 !|||:!!|||||||||:!!||||||||| !!||| !||| yGlnLeuLeuIleAsnHisSerGluGluValPheValGlu 441556 : ACAGTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA : 441596 vulgar: AfOr134like_1 279 331 . KQ414815.1 441440 441596 + 124 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441441 441596 124 + . gene_id 3 ; sequence AfOr134like_1 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441441 441596 . + . KQ414815.1 exonerate:protein2genome:local exon 441441 441596 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441441 441596 124 + . alignment_id 3 ; Query AfOr134like_1 ; Align 441441 280 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr134like_1 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 279 -> 331 Target range: 445552 -> 445708 280 : AsnLeuHisArgLeuValAsnAlaIleIleAlaLysLysAspGlnLeuGluIleIleV : 299 ::!:!! !:!:!!|||!!.||||||:!:.!!! !!!.|||||||||||||||:!:: HisValSerGlnIleValLysAlaIleValThrMetAsnAspGlnLeuGluIleLeuL 445553 : caTGTTTCACAGATAGTAAAAGCAATAGTGACAATGAATGATCAATTGGAGATACTGT : 445610 300 : alSerPheIlePhePheValAsnGlnLeuValPheMetPhePheCysAsnArgSerAl : 318 !!|||.!!!!:.!! !! !|||!!.:!!||||||:!!|||||| !||| !:!!!. euSerIleMetIleValSerAsnHisIleValPheLeuPhePheAsnAsnTyrAlaGl 445611 : TAAGTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGG : 445667 319 : aGlnIleLeuIleAsnAsnSerGluGluPhePheHisGlu : 331 !|||:!!|||||||||:!!||||||||| !!||| !||| yGlnLeuLeuIleAsnHisSerGluGluValPheValGlu 445668 : ACAGTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA : 445708 vulgar: AfOr134like_1 279 331 . KQ414815.1 445552 445708 + 124 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445553 445708 124 + . gene_id 4 ; sequence AfOr134like_1 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445553 445708 . + . KQ414815.1 exonerate:protein2genome:local exon 445553 445708 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445553 445708 124 + . alignment_id 4 ; Query AfOr134like_1 ; Align 445553 280 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr151_1 Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 466 Query range: 0 -> 234 Target range: 5294 -> 4042 1 : MetThrLysGlnValThrProGluLysAlaIleGlnIleIleTrpLeuSerValAlaSerTh : 21 ||| !||| ! !!:!||||||!:!||||||...:!!:!! :!!! !..!|||! !|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValHisValIleThrAlaPheTh 5294 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCACGTTATCACGGCTTTTAC : 5234 22 : rPheCysTrpProLeuSerIleAsnSerSerLysThrGlnValPheValPheArgValLeuG : 42 |! !|||||||||||| !! !..:!!!!!|||:!!! !|||.!! !|||!:!:!!|||: rCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuA 5233 : CTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGA : 5171 43 : lnIleThrSerIleIleAsnAlaCysMetLeuLeuLeuProLeuLeuTyrSerAlaTyrLeu : 62 :! ! ! !:!!:!!||||||! :!!|||!!!|||||||||||||||:!! !:!!:!! rgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHisVal 5170 : GATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTG : 5111 63 : HisPheAspAspIleIleThrValSerLysCysAlaGlyLeuAlaIleAlaLeuThrGlnIl : 83 ||| :!!||| ! !.!|||:!!|||..!||| !!|||.!!:!!||||||...||||| HisArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGlnIl 5110 : CATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCctcgtgcaaat : 5048 84 : eIleValGlnThrSerIleCysPheValLysTyrAspValLeuGln >>>> Target In : 99 |... ||||||! !:!!|||.!!! !:!!|||||| !!!!||| 550 ePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGln++ 5047 : atttttccagacTTTCGTTTGCATCGGCCAATACGATCATTTTCAGgt.............. : 4998 100 : tron 1 >>>> HisValIleGluGluMetIleThrTyrValLysGluAlaGlnGlnTyrG : 115 bp ! :!!||||||||||||! ! !! ! !:!! !|||:!!! !|||| ++LysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrG 4997 : ...........agAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACG : 4402 116 : luArgLysIleIleCysLysTyrIleLysLysCysHisIlePheTyrGlyCysSerIleVal : 135 ||||| ! :!!.!! ::!|||:!!!!.||| :::|||||| !! ! luArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSer 4401 : AAAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCA : 4342 136 : CysValTyrLeuThrAlaIleAlaPheIleIleGlyProValPheLeuSerThrSerPhePr : 156 !! !!||||||||||||||| !.!.:!!:!!||| !:!!.!!:!!||| ! !!||||| TrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPhePr 4341 : TGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCC : 4279 157 : oAlaAspAlaGluTyrProPheGlnIleAsnTyrThrProValLysValIleIleTyrLeuG : 177 |.!!:!!|||! !|||||||||! :!!|||!:! !|||:!!!:! !||||||!:!:!!! oThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetH 4278 : AACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGC : 4216 178 : lnGlnSerLeuValAlaPheGlnCysThrGlyHisValCysIleSerIlePheGlyAlaLeu : 197 !.||||||!!!|||!.!.!.||||||.!!!.!|||!.! !!!!:!:!:!:.!!..!|||||| isGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeu 4215 : ACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTG : 4156 198 : LeuLeuTrpIleThrAlaAlaArgPheGluCysLeuAlaValGluLeuGlnLysIleThrAs : 218 |||||| .!!|||.!!|||||||||||| ||| !..!||||||::!!!.:!!!.!:! LeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAs 4155 : TTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGA : 4093 219 : nIleSerMetLeuIleAlaCysValLysLysGlnLeuHisIleArgArg : 234 !|||..!! |||||| ! !!:!!|||||| ! ! ! !:!:|||||| pIleGluThrLeuIleLysSerMetLysLysTyrSerThrValArgArg 4092 : TATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: AfOr151_1 0 234 . LHQN01020543.1 5294 4042 - 466 M 98 294 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 5294 466 - . gene_id 1 ; sequence AfOr151_1 ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 5001 5294 . - . LHQN01020543.1 exonerate:protein2genome:local exon 5001 5294 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 4999 5000 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 4451 5000 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 4451 4452 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 4043 4450 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4450 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 5294 466 - . alignment_id 1 ; Query AfOr151_1 ; Align 5295 1 294 ; Align 4451 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr151_2PN Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 465 Query range: 0 -> 233 Target range: 5294 -> 4042 1 : MetLeuLysGlnLeuThrProGluLysUnkLeuSerThrLeu<->LeuGluLeuAlaSerTh : 20 ||||||||| ! ! !!:!||||||!:!...:!!||| !:!! :!! !|||! !|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValHisValIleThrAlaPheTh 5294 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCACGTTATCACGGCTTTTAC : 5234 21 : rLeuCysTrpProLeuSerAlaAsnSerSerLysThrGlnValPheIlePheLysAlaLeuG : 41 |! !|||||||||||| !!:!!!..:!!!!!|||:!!! !|||.!! !|||||| !|||: rCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuA 5233 : CTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGA : 5171 42 : lnIleIleSerIleIleAsnAlaPheIleLeuLeuLeuProLeuLeuTyrSerValTyrLeu : 61 :! !.!! !:!!:!!||||||!!.:!:|||!!!|||||||||||||||:!!:!!:!!:!! rgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHisVal 5170 : GATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTG : 5111 62 : HisPheAspAspValIleIleValSerLysCysValAlaLeuSerIleGlyLeuThrGlnLe : 82 ||| :!!|||!.! ! !|||:!!|||..!!.!..!|||!!!:!!!.!|||...|||:: HisArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGlnIl 5110 : CATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCctcgtgcaaat : 5048 83 : uIleThrGlnThrAlaIleCysIleAlaLysTyrAspSerLeuGln >>>> Target In : 98 :... |||||| !:!!||||||!.!:!!|||||| !!!!||| 550 ePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGln++ 5047 : atttttccagacTTTCGTTTGCATCGGCCAATACGATCATTTTCAGgt.............. : 4998 99 : tron 1 >>>> HisValIleGluGluMetIleIleCysIleLysAlaAlaGlnGlnTyrG : 114 bp ! :!!||||||||||||! |||||| !:!!.!!|||:!!! !|||| ++LysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrG 4997 : ...........agAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACG : 4402 115 : luArgLysIlePheHisLysTyrIleGluLysCysTyrThrPheTyrAlaCysSerIleThr : 134 ||||| ! :!!|||!!.::!|||:!!.!.||| |||||| !! :!! luArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSer 4401 : AAAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCA : 4342 135 : CysThrTyrLeuThrThrThrValPheIleIleGlyProAlaPheSerProSerSerPhePr : 155 !! !|||||||||.!!! !:!!.!.:!!:!!||| ! !.!!! ! !!..! !!||||| TrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPhePr 4341 : TGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCC : 4279 156 : oIleAspAlaGluTyrProPheGlnIleAsnTyrThrProValLysThrIleIleTyrLeuG : 176 |! !:!!|||! !|||||||||! :!!|||!:! !|||:!!!:!!:!||||||!:!:!!! oThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetH 4278 : AACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGC : 4216 177 : lnGlnThrLeuValSerPheGlnCysAlaGlyHisIleCysIleSerIlePheGlyAlaLeu : 196 !.|||:!!!!!|||.!!.!.|||||||||!.!||| ! !!!!:!:!:!:.!!..!|||||| isGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeu 4215 : ACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTG : 4156 197 : LeuLeuTrpPheThrAlaAlaArgPheGluCysLeuAlaValGluLeuGlnArgIleThrAs : 217 |||||| ||||||.!!|||||||||||| ||| !..!||||||::!!.!:!!!.!:! LeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAs 4155 : TTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGA : 4093 218 : nIleGlyMetLeuUnkAlaCysValLysLysGlnLeuArgIleArgLys : 233 !|||! !! ||| ! !!:!!|||||| ! ! !! !:!:|||!:! pIleGluThrLeuIleLysSerMetLysLysTyrSerThrValArgArg 4092 : TATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: AfOr151_2PN 0 233 . LHQN01020543.1 5294 4042 - 465 M 14 42 G 0 3 M 83 249 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 5294 465 - . gene_id 1 ; sequence AfOr151_2PN ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 5001 5294 . - . LHQN01020543.1 exonerate:protein2genome:local exon 5001 5294 . - . insertions 3 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 4999 5000 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 4451 5000 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 4451 4452 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 4043 4450 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4450 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 5294 465 - . alignment_id 1 ; Query AfOr151_2PN ; Align 5295 1 42 ; Align 5250 15 249 ; Align 4451 98 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr157 Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 329 Query range: 0 -> 232 Target range: 5294 -> 4042 1 : MetSerArgGlnValThrProGluLysSerValTyrLeuValTrpLeuSerValAlaIleTh : 21 |||! !!:! ! !!:!||||||!:!:!!:!!! !|||||| :!!! !..!|||.!!|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValHisValIleThrAlaPheTh 5294 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCACGTTATCACGGCTTTTAC : 5234 22 : rPheCysTrpProLeuProAlaAsnThrAlaArgLysLysIleValGlyMetLysValLeuL : 42 |! !|||||||||||||||:!!!...!!.!!!:!... !:!::!! !.!.|||:!!||| rCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuA 5233 : CTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGA : 5171 43 : euIleAlaSerIleIleAsnGlyCysValValIleLeuAlaMetPheTyrTrpIleArgLeu : 62 ! ! ! !:!!:!!|||!.!! |||:!!.!!||| !!:!!!!.||| :!:!.!:!! rgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHisVal 5170 : GATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTG : 5111 63 : HisLeuAspAspIleIleSerLeuPheLysCysValCysValValLeuCysLeuLeuGlnTy : 83 |||! !:!!||| ! !:!:!! |||..!!.!|||:!!..!|||..!|||:::||| HisArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGlnIl 5110 : CATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCctcgtgcaaat : 5048 84 : rValValGlnThrIleValCysPheValLysTyrAspThrLeuGln >>>> Target In : 99 ||||||.!!||||||.!!! !:!!|||||| !!!!||| 550 ePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGln++ 5047 : atttttccagacTTTCGTTTGCATCGGCCAATACGATCATTTTCAGgt.............. : 4998 100 : tron 1 >>>> ArgValValAspGluMetMetGlyCysIleAsnGluAlaLysThrAspG : 115 bp !:!:!!:!!!!:||||||! ! !||| !.!. !|||||| !! !!| ++LysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrG 4997 : ...........agAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACG : 4402 116 : lu<-><->IleLeuArgAlaTyrAlaSerArgCysAsnThrLeuTyrGlyMetSerLeuLeu : 133 || :!!!!!!:! !|||!.!!:!!:! ::: ...||| !!! !! ! luArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSer 4401 : AAAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCA : 4342 134 : SerIleTyrIleCysGlyThrSerPheValPheThrProLeuPheLeuProAsnProPhePr : 154 !!!.!!|||:!! !.!! !! !.!.|||.!! ! !|||.!!:!! !!:!!|||||||| TrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPhePr 4341 : TGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCC : 4279 155 : oPheGluThrGluTyrProPheAspValAsnThrThrSerArgSerPheIleIleTyrAlaS : 175 | !.!..!!! !||||||||| !|||||| ! ! !! !!!! !||||||!:! ! oThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetH 4278 : AACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGC : 4216 176 : erHisValLeuAlaIlePheGlnSerThrGlyHisMetCysLeuCysThrPheGlyAlaVal : 195 !!!. !!!!!.! !.!.|||!!!.!!!.!||| !!:!! !..!.!!..!|||:!! isGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeu 4215 : ACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTG : 4156 196 : LeuLeuTrpPheThrAlaAlaArgPheGluCysLeuIleGlyGluLeuArgSerValThrSe : 216 |||||| ||||||.!!|||||||||||| |||:!: !|||||||||!:!|||!.!.. LeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAs 4155 : TTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGA : 4093 217 : rIleAspAlaLeuValValCysLeuLysLysHisSerArgLeuLysArg : 232 !|||!!:.!!|||:!! ! !!:!!||||||:!!|||! !:!!::!||| pIleGluThrLeuIleLysSerMetLysLysTyrSerThrValArgArg 4092 : TATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: AfOr157 0 232 . LHQN01020543.1 5294 4042 - 329 M 98 294 5 0 2 I 0 546 3 0 2 M 17 51 G 0 6 M 117 351 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 5294 329 - . gene_id 1 ; sequence AfOr157 ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 5001 5294 . - . LHQN01020543.1 exonerate:protein2genome:local exon 5001 5294 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 4999 5000 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 4451 5000 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 4451 4452 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 4043 4450 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4450 . - . insertions 6 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 5294 329 - . alignment_id 1 ; Query AfOr157 ; Align 5295 1 294 ; Align 4451 99 51 ; Align 4394 116 351 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr150 Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 483 Query range: 0 -> 234 Target range: 5294 -> 4042 1 : MetLeuLysGlnLeuThrProGluLysAlaIleHisIleThrTrpLeuSerValAlaIleTh : 21 ||||||||| ! ! !!:!||||||!:!|||||| !:!!..! :!!! !..!|||.!!|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValHisValIleThrAlaPheTh 5294 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCACGTTATCACGGCTTTTAC : 5234 22 : rPheCysTrpProLeuProAlaAsnSerSerLysIleGlnValPheMetPheLysAlaLeuG : 42 |! !|||||||||||||||:!!!..:!!!!!||| !! !|||.!!...|||||| !|||: rCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuA 5233 : CTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGA : 5171 43 : lnIleIleSerIleIleAsnAlaPheValLeuLeuLeuProLeuLeuTyrSerIleTyrLeu : 62 :! !.!! !:!!:!!||||||!!.||||||!!!|||||||||||||||:!!:!::!!:!! rgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHisVal 5170 : GATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTG : 5111 63 : HisPheAspAspIleValValValPheLysSerIleAlaLeuCysValGlyLeuSerGlnMe : 83 ||| :!!||| !! ! !||| |||:!! !..!||| :!!!.!||| |||:: HisArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGlnIl 5110 : CATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCctcgtgcaaat : 5048 84 : tIleIleGlnThrAlaIleCysPheValLysTyrAspSerLeuGln >>>> Target In : 99 :......|||||| !:!!|||.!!! !:!!|||||| !!!!||| 550 ePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGln++ 5047 : atttttccagacTTTCGTTTGCATCGGCCAATACGATCATTTTCAGgt.............. : 4998 100 : tron 1 >>>> ArgValIleGluGluMetIleThrTyrValLysGluAlaGlnGlnTyrG : 115 bp !:!:!!||||||||||||! ! !! ! !:!! !|||:!!! !|||| ++LysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrG 4997 : ...........agAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACG : 4402 116 : luArgLysIlePheHisLysTyrIleGluLysCysHisIlePheTyrGlyCysSerIleIle : 135 ||||| ! :!!|||!!.::!|||:!!.!.||| :::|||||| !! ! luArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSer 4401 : AAAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCA : 4342 136 : CysMetTyrLeuThrGlyValAlaPheIleIleGlyProAlaPheSerProAlaSerPhePr : 156 !! .!.|||||||||!.!:!! !.!.:!!:!!||| ! !.!!! ! !!! ! !!||||| TrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPhePr 4341 : TGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCC : 4279 157 : oAlaAspAlaGluTyrProPheGlnIleAsnTyrLysProValLysValIleIleTyrLeuG : 177 |.!!:!!|||! !|||||||||! :!!|||!:!:!!|||:!!!:! !||||||!:!:!!! oThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetH 4278 : AACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGC : 4216 178 : lnGlnThrLeuValGlyPheGlnCysThrAlaHisIleCysLeuSerValPheGlyAlaLeu : 197 !.|||:!!!!!||||||.!.||||||.!!|||||| ! !!:!!!:!|||.!!..!|||||| isGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeu 4215 : ACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTG : 4156 198 : LeuLeuTrpPheThrAlaAlaArgPheGluCysLeuAlaValGluLeuLysLysIleThrAs : 218 |||||| ||||||.!!|||||||||||| ||| !..!||||||!:!!!.:!!!.!:! LeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAs 4155 : TTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGA : 4093 219 : nIleGlyMetLeuIleValCysValLysLysGlnLeuHisValArgArg : 234 !|||! !! |||||| ! !!:!!|||||| ! ! ! !||||||||| pIleGluThrLeuIleLysSerMetLysLysTyrSerThrValArgArg 4092 : TATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: AfOr150 0 234 . LHQN01020543.1 5294 4042 - 483 M 98 294 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 5294 483 - . gene_id 1 ; sequence AfOr150 ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 5001 5294 . - . LHQN01020543.1 exonerate:protein2genome:local exon 5001 5294 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 4999 5000 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 4451 5000 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 4451 4452 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 4043 4450 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4450 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 5294 483 - . alignment_id 1 ; Query AfOr150 ; Align 5295 1 294 ; Align 4451 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr153 Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 312 Query range: 96 -> 234 Target range: 4456 -> 4042 97 : LeuGlnHisValIleGluGluMetLysIleCysValLysGluAlaGlnLysTyrGluIleGl : 117 |||||| ! :!!||||||||||||||||||||| !:!! !|||:!! !||||||! !!! LeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAs 4456 : TTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGA : 4396 118 : uIlePheGlnLysTyrIleAlaLysLeuLysThrValTrpGlyCysSerIleThrCysMetT : 138 ::!!||||||::!|||:!! !|||! ... ::: !! :!!!! .!.| pValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheT 4395 : CGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTT : 4333 139 : yrLeuThrAlaLeuAlaPheThrIleGlyProValPheMetSerThrProLeuProCysAsp : 158 |||||||||||:!! !.!...!:!!||| !:!!.!!!!:||| !|||!!!||| !:!! yrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPheProThrAsn 4332 : ACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACCAAC : 4273 159 : AlaGluTyrProPheGlnLeuAsnTyrThrProValPheAlaIleValTyrPheHisGlnSe : 179 |||! !|||||||||! :!!|||!:! !|||:!! ::!|||:!!!:!.!.|||||||| AlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHisGlnSe 4272 : GCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCACCAATC : 4210 180 : rPheLeuSerTyrGlnCysLeuAlaHisMetCysIleSerMetPheGlySerLeuLeuLeuT : 200 ||||:!!.!! |||||| !|||||| !!!!:!:!:!!.!!..!:!!||||||||| rPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeuLeuLeuL 4209 : GTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTGTTATTGC : 4147 201 : rpPheThrAlaAlaArgPheGluCysLeuCysValGluLeuGlnAsnAlaThrAspIleAsp : 220 ||||||.!!|||||||||||| ||| ..!||||||::!|||!.!!.!||||||!!: euPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAspIleGlu 4146 : TATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGATATCGAA : 4087 221 : MetLeuIleValCysIleLysLysGlnLeuHisLeuArgArg : 234 ! |||||| ! !!!!:|||||| ! ! ! !:!!|||||| ThrLeuIleLysSerMetLysLysTyrSerThrValArgArg 4086 : ACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: AfOr153 96 234 . LHQN01020543.1 4456 4042 - 312 M 138 414 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 4456 312 - . gene_id 1 ; sequence AfOr153 ; gene_orientation . LHQN01020543.1 exonerate:protein2genome:local cds 4043 4456 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4456 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 4456 312 - . alignment_id 1 ; Query AfOr153 ; Align 4457 97 414 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr149 Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 450 Query range: 0 -> 235 Target range: 5294 -> 4042 1 : MetLeuLysGlnValThrPheGluLysValIleHisIleIleTrpPheSerValAlaLeuTh : 21 ||||||||| ! !!:! |||!:!!.!||| !:!!:!! !!! !..!|||!!!|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValHisValIleThrAlaPheTh 5294 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCACGTTATCACGGCTTTTAC : 5234 22 : rPheCysTrpProLeuProAlaAsnSerThrLysAsnGlnValPheValPheArgIleLeuG : 42 |! !|||||||||||||||:!!!..:!!||||||::!! !|||.!! !|||!:!||||||: rCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuA 5233 : CTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGA : 5171 43 : lnIleIleSerIleIleAsnAlaPheMetLeuIleLeuProLeuLeuTyrSerIleTyrLeu : 62 :! !.!! !:!!:!!||||||!!.:!!|||.!!|||||||||||||||:!!:!::!!:!! rgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHisVal 5170 : GATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTG : 5111 63 : HisPheAsnAspIleAlaIleValPheGlnSerLeuSerIleLeuValGlyLeuSerGlnMe : 83 ||| |||||| !! !! !||| :!!:!! !!!!:!: !:!!!.!||| |||:: HisArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGlnIl 5110 : CATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCctcgtgcaaat : 5048 84 : tIleIleGlnThrValIleLeuCysPheValLysTyrAsnSerLeuGln >>>> Target : 100 :......|||||| !!:!! |||.!!! !:!!|||:!! !!!!||| 5 ePhePheGlnThrPheVal---CysIleGlyGlnTyrAspHisPheGln++ 5047 : atttttccagacTTTCGTT---TGCATCGGCCAATACGATCATTTTCAGgt........... : 4998 101 : Intron 1 >>>> ArgValIleGluGluMetIleThrCysValLysGluAlaGlnGlnT : 115 50 bp !:!:!!||||||||||||! ! !||| !:!! !|||:!!! !| ++LysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProT 4997 : ..............agAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCAT : 4405 116 : yrGluArgLysIlePheCysLysTyrIleAspLysCysAsnIlePheTyrGlySerSerLeu : 135 |||||||| ! :!!||| ::!|||:!!:!!||| ::::::|||||| ::: !!! ! yrGluArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSer 4404 : ACGAAAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCG : 4345 136 : IlePheThrTyrMetValValIleValTyrIleMetGlyProIleValLeuProAlaProPh : 156 !!:: !|||:!:..!!.!|||:!! :!!:!:||| !:!::!!:!! !!! !||||| SerTrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPh 4344 : TCATGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTT : 4282 157 : eProIleAspThrGluTyrProPheHisValAsnTyrThrIleThrArgIleIleIleTyrL : 177 ||||! !:!!.!!! !|||||||||! !||||||!:! ! ! !|||! !||||||!:!: eProThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheM 4281 : TCCAACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTA : 4219 178 : euGlnGlnSerLeuLeuIleValGlnCysAlaGlyHisValCysLeuSerValPheGlyAla : 197 !!!!.||||||!!!:!! !:!!|||||||||!.!|||!.! !!:!!!:!|||.!!..!||| etHisGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAla 4218 : TGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCA : 4159 198 : LeuLeuLeuTrpPheThrAlaAlaArgPheGluCysLeuIleValGluLeuGlnLysIleTh : 218 ||||||||| ||||||.!!|||||||||||| |||:!:..!||||||::!!!.:!!!. LeuLeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAs 4158 : CTGTTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAA : 4096 219 : rAsnIleGlyMetLeuIleIleCysIleGluLysGlnLeuArgLeuArgArg : 235 !:!!|||! !! ||||||! !!!!::!!||| ! ! !! !:!!|||||| nAspIleGluThrLeuIleLysSerMetLysLysTyrSerThrValArgArg 4095 : TGATATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: AfOr149 0 235 . LHQN01020543.1 5294 4042 - 450 M 89 267 G 1 0 M 9 27 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 5294 450 - . gene_id 1 ; sequence AfOr149 ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 5001 5294 . - . LHQN01020543.1 exonerate:protein2genome:local exon 5001 5294 . - . insertions 0 ; deletions 1 LHQN01020543.1 exonerate:protein2genome:local splice5 4999 5000 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 4451 5000 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 4451 4452 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 4043 4450 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4450 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 5294 450 - . alignment_id 1 ; Query AfOr149 ; Align 5295 1 267 ; Align 5028 91 27 ; Align 4451 100 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr159like_1PF1 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 237 Query range: 0 -> 128 Target range: 208521 -> 208914 1 : LysTyrGlnGluAspHisLysIleIleLeuLysAsnAlaSerPheAsnTyrArgLeuI : 20 :!!:!!:!!||||||...||||||!!:||| ! |||||||||||| ! !:!|||| GluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuI 208522 : GAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGA : 208579 21 : leValIleCys<->PheUnkMetHisGlyGlyMetIlePheTyrTyrIleIleLeuPr : 38 ||||||||||| ! |||:!!||||||:::||||||||||||||| !||||| leValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuPr 208580 : TCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCC : 208636 39 : oPheThrArgThrLysIleValGluLysGlySerAsnLeuIleUnkGluGlyAsnLys : 57 |.!!|||||| !|||:!!||||||:!!|||.!!||||||! !..!:! oLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyr------ArgArg 208637 : GCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTAC------AGAAGG : 208687 58 : ArgValCysProPheProLysIleLeuLeuHisAlaCysHisSerThrIleAsnGluI : 77 ! !|||! !||| !!||||||.!!:!!||| !!!.! ! :!!||| !!:!:||||||| LeuValTyrProValProLysPheIleLeuAspValArgTyrSerProValAsnGluI 208688 : CTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGA : 208747 78 : leArgTyrMetIleGlnLeuLeuCysAsnIleIle<-><-><-><-><->ValProAl : 91 || !|||! !:!!|||||||||! ..!.!!:!! ||| !|| lePheTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAl 208748 : TTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGC : 208804 92 : aCysSerLeuAlaMetLeuUnkPheValIleHisThrCysArgGlnLeuGlnIleLeu : 110 ||||.!!|||||| !||| .!!!.!!!:|||.!!||| !!||||||||||||||| aCysGlyLeuAlaAlaLeu---LeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeu 208805 : TTGCGGTTTGGCCGCGCTG---CTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTG : 208858 111 : MetSerTrpPheGluLysIleLeuAsnUnkArgLysAsnAsnAsnGluAsnLeu : 128 |||||||||.!.||||||:!::!!:!! |||:!!:!!.!..!.:!!|||||| MetSerTrpMetGluLysLeuValAspGlyArgGluAspGluGluLysAsnLeu 208859 : ATGTCCTGGATGGAGAAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTG : 208914 vulgar: AfOr159like_1PF1 0 128 . KQ414889.1 208521 208914 + 237 M 23 69 G 0 3 M 30 90 G 2 0 M 33 99 G 0 15 M 9 27 G 1 0 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208522 208914 237 + . gene_id 1 ; sequence AfOr159like_1PF1 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208522 208914 . + . KQ414889.1 exonerate:protein2genome:local exon 208522 208914 . + . insertions 18 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 208522 208914 237 + . alignment_id 1 ; Query AfOr159like_1PF1 ; Align 208522 1 69 ; Align 208594 24 90 ; Align 208684 56 99 ; Align 208798 89 27 ; Align 208825 99 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr159like_1PF1 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 1 -> 128 Target range: 221690 -> 222080 2 : TyrGlnGluAspHisLysIleIleLeuLysAsnAlaSerPheAsnTyrArgLeuIleV : 21 |||...:!!||| ! ! |||!!::!!:!!||||||! !|||..! |||||||||: TyrSerLysAspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleM 221691 : TACTCCAAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCA : 221748 22 : alIleCys<->PheUnkMetHisGlyGlyMetIlePheTyrTyrIleIleLeuProPh : 39 !!|||||| ||| |||:!!.!!|||...:::|||||||||||| !:!!||||| etIleCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPh 221749 : TGATCTGCACATTTTTCATGTACAGTggtttcgttttttattacatAGCCATACCGTT : 221805 40 : eThrArgThrLysIleValGluLysGlySerAsnLeuIleUnkGluGlyAsnLysArg : 58 |!:! ! !|||||| !! !:!!! ! |||::: !! ! eSerValGlyLysIleProAlaGlnAspValAsnValThrPhe------IleProMet 221806 : TAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaactttt------attCCAATG : 221856 59 : ValCysProPheProLysIleLeuLeuHisAlaCysHisSerThrIleAsnGluIleA : 78 |||! !|||||| !!!:!.!!:!!:!! !!.!! ! :!!||| !!:!!|||||||||! ValPheProPheSerArgPheIleValAspThrArgTyrSerProValAsnGluIleL 221857 : GTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTC : 221916 79 : rgTyrMetIleGlnLeu<-><-><-><->LeuCysAsnIleIleValProAlaCysSe : 93 !!:! !:!!|||:!! ||| :!!! !|||..! !!|||..!!! euPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCy 221917 : TGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTG : 221973 94 : rLeuAlaMetLeuUnkPheValIleHisThrCysArgGlnLeuGlnIleLeuMetSer : 112 ! ! !:!: ! |||!.!:!:|||.!!||| !!|||:!!|||:!:||||||||| sSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSer 221974 : CAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGC : 222030 113 : TrpPheGluLysIleLeuAsnUnkArgLysAsnAsnAsnGluAsnLeu : 128 |||.!.:!! ! :!::!!||| ||| !:!!! !.!.|||:!! TrpLeuLysHisLeuIleAsnGlyArgAlaAspMetCysAsnAsnVal 222031 : TGGCTGAAACATTTGATCAACGGCCGGGCGGATATGTGTAACAACGTG : 222080 vulgar: AfOr159like_1PF1 1 128 . KQ414889.1 221690 222080 + 162 M 22 66 G 0 3 M 30 90 G 2 0 M 28 84 G 0 12 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221691 222080 162 + . gene_id 2 ; sequence AfOr159like_1PF1 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221691 222080 . + . KQ414889.1 exonerate:protein2genome:local exon 221691 222080 . + . insertions 15 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 221691 222080 162 + . alignment_id 2 ; Query AfOr159like_1PF1 ; Align 221691 2 66 ; Align 221760 24 90 ; Align 221850 56 84 ; Align 221946 84 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr159like_1PF1 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 0 -> 128 Target range: 227239 -> 227632 1 : LysTyrGlnGluAspHisLysIleIleLeuLysAsnAlaSerPheAsnTyrArgLeuI : 20 !:!|||! !||||||...!!.:!:!!::!!! ! !!|||! !!:!... !:!|||| ArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuI 227240 : AGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGA : 227297 21 : leValIleCys<->PheUnkMetHisGlyGlyMetIlePheTyrTyrIleIleLeuPr : 38 ||..!|||||| ||| :!: !.........:::|||:::||||||:!!:!!|| leThrIleCysThrPhePheValPheSerSerPheValPhePheTyrIleValValPr 227298 : TCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACC : 227354 39 : oPheThrArgThrLysIleValGluLysGlySerAsnLeuIleUnkGluGlyAsnLys : 57 |.!!!.! ! !!..:!!!.! !:!!! !.!!||| ... !! !:!! oIleAsnAlaGlySerValAlaThrGluAspGlyAsn------HisSerTyrIleGln 227355 : TATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAAC------CACAGTTACATTCAG : 227405 58 : ArgValCysProPheProLysIleLeuLeuHisAlaCysHisSerThrIleAsnGluI : 77 ! ! !! !|||||||||||||||:!! ! !!!.! !!:!!||| !!.!!||||||| MetProPheProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGluI 227406 : ATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGA : 227465 78 : leArgTyrMetIleGlnLeuLeuCysAsnIleIle<-><-><->ValProAlaCysSe : 93 || !!:! !:!!|||!!!:!! ..!|||:!: ||| !!:!!..!:! lePhePheSerValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAl 227466 : TCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGC : 227522 94 : rLeuAlaMetLeuUnkPheVal<->IleHisThrCysArgGlnLeuGlnIleLeuMet : 111 !! !::!||| !....!.:!! :!!|||.!!||| !!|||:!!:!!:!:|||:!! aCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuVal 227523 : TTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTG : 227579 112 : SerTrpPheGluLysIleLeuAsnUnkArgLysAsnAsnAsnGluAsnLeu : 128 ||||||.!.! ! ! :!::!!:!! ||| !:!!! !:!:!!!..||| SerTrpLeuGlyHisLeuIleAspGlyArgAlaAspMetSerLysThrLeu 227580 : TCCTGGCTGGGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTG : 227632 vulgar: AfOr159like_1PF1 0 128 . KQ414889.1 227239 227632 + 113 M 23 69 G 0 3 M 27 81 G 2 0 M 36 108 G 0 9 M 12 36 G 0 3 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 227240 227632 113 + . gene_id 3 ; sequence AfOr159like_1PF1 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 227240 227632 . + . KQ414889.1 exonerate:protein2genome:local exon 227240 227632 . + . insertions 15 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 227240 227632 113 + . alignment_id 3 ; Query AfOr159like_1PF1 ; Align 227240 1 69 ; Align 227312 24 81 ; Align 227393 53 108 ; Align 227510 89 36 ; Align 227549 101 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr141P Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 443 Query range: 300 -> 434 Target range: 117471 -> 118062 301 : ArgPheCysGluAspIleGluHisLeuThrSerGlyMetPhePheIleGlnValIleA : 320 |||||||||:!!|||||||||!.!:!!|||!:!! !|||||||||! |||:!!.!!! ArgPheCysGlnAspIleGluArgValThrAsnValMetPhePheThrGlnLeuPheG 117472 : AGGTTTTGCCAGGACATCGAACGTGTTACGAACGTGATGTTTTTCACGCAGCTGTTCG : 117529 321 : laSerThrTyrAsnIleSerLeuValGlyPheLysLeuLeuGlu >>>> Target : 335 .!||||||||||||||||||||||||||||||||||||:!!! ! 56 lySerThrTyrAsnIleSerLeuValGlyPheLysLeuIleGly++ 117530 : GTAGCACGTACAACATATCTTTAGTGGGCTTCAAGTTGATCGGGgt............ : 117576 336 : Intron 1 >>>> AspThrProAspLysPheLysTyrIleThrGlnLeuIleIleL : 349 bp ||| !|||||||||!:!|||||||||!:!|||||| ||| ++AspAspProAspLysTyrLysTyrIleSerGlnLeuSerIleA 117577 : .............agGACGATCCTGATAAATACAAGTACATCAGCCAACTCTCGATAG : 117672 350 : euIleIleGlnLeuPheLeuCysAsnTrpProAlaAspLeuLeuLeuSerLys >>> : 367 !||||||||||||||||||||||||||||||||||||!!!|||! !|||||| laIleIleGlnLeuPheLeuCysAsnTrpProAlaAspPheLeuTyrSerLys++ 117673 : CCATCATCCAGCTTTTCCTCTGCAATTGGCCCGCAGATTTCCTCTACTCGAAGgt... : 117728 368 : > Target Intron 2 >>>> SerValAspIleSerArgAlaThrTyrSerMetP : 378 63 bp |||! !! |||.!!||||||.!!|||!!!:!!| ++SerGluAlaIleGlyArgAlaAlaTyrThrValP 117729 : ......................agAGCGAAGCGATCGGTCGTGCAGCCTATACGGTGC : 117822 379 : roTrpTyrArgTyrSerTyrAsnLeuGlnLysIleThrAsnIleLeuMetValArgSe : 397 |||||:!! !!||| !! ! !|||!:!||| !||||||!!:||||||:!!|||.! roTrpHisTrpTyrProArgCysLeuArgLysProThrAsnMetLeuMetIleArgGl 117823 : CTTGGCATTGGTACCCTCGTTGCTTGCGAAAACCAACCAACATGCTGATGATCAGAGG : 117879 398 : rGlnLysAlaValArgLeuThrAlaGlyLysPheIleGlyLeuSerLeuGluThrPhe : 416 !|||||| !!|||||||||||||||||||||.!!:!!||||||||||||||||||||| yGlnLysProValArgLeuThrAlaGlyLysIleValGlyLeuSerLeuGluThrPhe 117880 : TCAGAAACCGGTTCGTCTGACCGCCGGAAAAATCGTCGGACTCTCTCTGGAAACGTTT : 117936 417 : AlaSer >>>> Target Intron 3 >>>> MetIleSerThrAlaAlaSerPh : 426 |||||| 70 bp |||||||||:!!|||!.!||||| AlaSer++ ++MetIleSerSerAlaValSerPh 117937 : GCCTCTgt.........................agATGATATCGTCGGCCGTGTCCTT : 118036 427 : ePheThrMetValArgSerMetAsn : 434 |||||||:!:||||||!!!|||||| ePheThrValValArgThrMetAsn 118037 : CTTCACCGTCGTTCGAACCATGAAT : 118062 vulgar: AfOr141P 300 434 . KQ414940.1 117471 118062 + 443 M 34 102 5 0 2 I 0 52 3 0 2 M 32 96 5 0 2 I 0 59 3 0 2 M 52 156 5 0 2 I 0 66 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 117472 118062 443 + . gene_id 1 ; sequence AfOr141P ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 117472 117573 . + . KQ414940.1 exonerate:protein2genome:local exon 117472 117573 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 117574 117575 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 117574 117629 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 117628 117629 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 117630 117725 . + . KQ414940.1 exonerate:protein2genome:local exon 117630 117725 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 117726 117727 . + . intron_id 2 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 117726 117788 . + . intron_id 2 KQ414940.1 exonerate:protein2genome:local splice3 117787 117788 . + . intron_id 1 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 117789 117944 . + . KQ414940.1 exonerate:protein2genome:local exon 117789 117944 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 117945 117946 . + . intron_id 3 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 117945 118014 . + . intron_id 3 KQ414940.1 exonerate:protein2genome:local splice3 118013 118014 . + . intron_id 2 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 118015 118062 . + . KQ414940.1 exonerate:protein2genome:local exon 118015 118062 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 117472 118062 443 + . alignment_id 1 ; Query AfOr141P ; Align 117472 301 102 ; Align 117630 335 96 ; Align 117789 367 156 ; Align 118015 419 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr141P Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 434 Query range: 8 -> 148 Target range: 116665 -> 117085 9 : GluPheAsnLysThrIleAspLeuAsnLeuPheUnkLeuLysLeuCysGlyIleValS : 28 ||||||:!!!:! !|||! !||||||||| ! |||!:!|||||||||:!::!! GluPheAspArgLeuIleGlyLeuAsnLeuAspLeuLeuArgLeuCysGlyValIleP 116666 : GAATTCGATAGATTGATCGGCTTGAATCTGGATCTTCTGAGATTGTGCGGCGTGATAC : 116723 29 : erCysGlyAspGlyPheAlaAsnArgAsnIleLeuAlaTrpLeuAlaPheSerCysLe : 47 !!||||||...|||||| !..!|||||| !||||||!! :!!||||||.!!||||| roCysGlySerGlyPheLeuGlyArgAsnGlyLeuAlaCysValAlaPheGlyCysLe 116724 : CGTGCGGTTCAGGATTTCTAGGTAGAAATGGTCTGGCGTGTGTAGCGTTCGGCTGTCT : 116780 48 : uThrIleTyrSerIleSerTyrValHisGluPheIleThrAsnThrThrAsnLeuThr : 66 ||||:!!|||||||||||||||..!:!!:!!|||:!!||| !! ! !|||||| ! uThrValTyrSerIleSerTyrThrTyrGlnPheValThrCysMetGluAsnLeuAsp 116781 : GACCGTATACAGCATCTCGTACACGTATCAATTTGTCACGTGTATGGAGAACCTGGAC : 116837 67 : ThrAlaLeuGluSerIleAlaMetIleIleSerIleValGlyGlyHisAlaArgTyrM : 86 ||| !!!!||||||.!!.!!||||||||||||||||||||||||!!.||||||!:! ThrIlePheGluSerPheThrMetIleIleSerIleValGlyGlyGlnAlaArgPheS 116838 : ACCATTTTCGAGTCGTTCACGATGATCATCTCGATCGTGGGCGGTCAGGCGCGGTTCT : 116897 87 : etIleLeuLeuTrpPheArgAspIleCysGlnThrMetLeuAsnValCysGluThrPh : 105 !||||||! !|||||||||! !! !|||!:!|||||||||.!.!.!|||||| !.! erIleLeuSerTrpPheArgGlyThrCysArgThrMetLeuGluAlaCysGluPheLe 116898 : CGATCCTGTCGTGGTTCCGCGGTACCTGTCGAACGATGCTCGAAGCCTGCGAGTTCCT : 116954 106 : eTrpSerAsnLeuLysProHisGluLysLysIleValGlnSerTyrThrArgLysThr : 124 !||||||!.!|||||||||!..||||||:!!||||||!:!||||||.!!!.!|||||| uTrpSerThrLeuLysProArgGluLysGluIleValArgSerTyrAlaAsnLysThr 116955 : CTGGTCGACTCTGAAACCGCGGGAGAAGGAGATCGTTCGAAGTTACGCGAACAAAACG : 117011 125 : ThrArgLeuThrArgTrpTyrLeuAlaSerCysValLeuThrIleAlaPheTyrAlaP : 144 ! ! !|||||||||!! ||||||||||||||||||!!!|||||| !.!!|||!.! ArgLeuLeuThrArgCysTyrLeuAlaSerCysValPheThrIlePheIleTyrGlyV 117012 : AGATTGCTGACCCGCTGCTACTTGGCCAGCTGCGTCTTCACCATCTTCATTTACGGCG : 117071 145 : heLeuValLeuPhe : 148 ! !!!!.!|||||| alPheAlaLeuPhe 117072 : TGTTCGCTCTCTTC : 117085 vulgar: AfOr141P 8 148 . KQ414940.1 116665 117085 + 434 M 140 420 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 116666 117085 434 + . gene_id 2 ; sequence AfOr141P ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 116666 117085 . + . KQ414940.1 exonerate:protein2genome:local exon 116666 117085 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 116666 117085 434 + . alignment_id 2 ; Query AfOr141P ; Align 116666 9 420 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr141P Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 275 Query range: 182 -> 263 Target range: 117145 -> 117388 183 : ArgHisLeuProTyrAlaPhePheLeuAspValGlnLysThrProTrpTyrGluIleV : 202 |||!.!|||||||||!.!|||||||||!!:||||||:!!||||||||||||||||||. ArgArgLeuProTyrValPhePheLeuGluValGlnGlnThrProTrpTyrGluIleT 117146 : AGACGTTTGCCGTACGTGTTCTTTCTTGAGGTGCAACAAACGCCGTGGTACGAGATCA : 117203 203 : alTyrAlaLeuGlnLeuIleGlyMetPheAsnValGlyPheThrCysValGlyValAs : 221 .!! !||||||||||||.!!!.!|||!!.|||||||||.!!||||||||||||||||| hrCysAlaLeuGlnLeuPheAlaMetLeuAsnValGlyIleThrCysValGlyValAs 117204 : CTTGCGCCCTTCAGCTGTTCGCGATGTTGAACGTCGGCATCACCTGTGTCGGAGTAGA : 117260 222 : pThrValGlyAlaLeuPheIleLeuIleThrCysGlyTyrPheAspThrIleArgSer : 240 ||||:!!||| !!||||||:!!|||:!!||||||!.!:!!||||||..!||||||||| pThrIleGlyProLeuPheValLeuLeuThrCysAlaHisPheAspValIleArgSer 117261 : CACGATCGGTCCTCTCTTCGTCCTGCTCACTTGTGCTCATTTCGACGTGATTCGATCT : 117317 241 : ArgIleGluAsnLeuHisSerPheAspThrSerLeuProSerSerSerLeuSerLeuL : 260 |||||||||!:!||||||:!!.!!||| !|||! ! !||| !..! !!!! !| ArgIleGluSerLeuHisAlaIleAspArgSerSerSerSerValGlnThrArgAsnL 117318 : CGAATCGAGAGTTTACACGCGATCGATCGTTCTTCGAGCAGCGTACAGACGAGAAATC : 117377 261 : euAsnIleLeu : 263 ||...:!!||| euArgValLeu 117378 : TCCGAGTCTTG : 117388 vulgar: AfOr141P 182 263 . KQ414940.1 117145 117388 + 275 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 117146 117388 275 + . gene_id 3 ; sequence AfOr141P ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 117146 117388 . + . KQ414940.1 exonerate:protein2genome:local exon 117146 117388 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 117146 117388 275 + . alignment_id 3 ; Query AfOr141P ; Align 117146 183 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr141P Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 333 -> 433 Target range: 807287 -> 807587 334 : GluAspThrProAspLysPheLysTyrIleThrGlnLeuIleIleLeuIleIleGlnL : 353 :!!|||!.! !! !!!.!:! !.!!..!! !:!!:!:! !|||:!:||||||| LysAspAsnValAlaAlaLeuArgSerPheValLeuMetValThrLeuLeuIleGlnL 807288 : AAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGC : 807345 354 : euPheLeuCysAsnTrpProAlaAspLeuLeuLeuSerLysSerValAspIleSerAr : 372 ||!:!|||! ! !!:: !!!.!:!! !||| !|||::!!!!! !!!:|||:!!!: euTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluIleAlaGl 807346 : TGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACA : 807402 373 : gAlaThrTyrSerMetProTrpTyrArgTyrSerTyrAsnLeuGlnLysIleThrAsn : 391 !|||.!!|||..! ! !|||||||||! ! ! :!! ! !:! ! ! ! nAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeu 807403 : AGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTT : 807459 392 : IleLeuMetValArgSerGlnLysAlaValArgLeuThrAlaGlyLysPheIleGlyL : 411 :!::!!!!: !|||.!!.!...! !! !|||:!!|||||||||||||||:!! !: LeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheValProM 807460 : TTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGA : 807519 412 : euSerLeuGluThrPheAlaSerMetIleSerThrAlaAlaSerPhePheThrMetVa : 430 !!!:!||| |||||| !..!!!::!:!.!.!!:!!!.!|||!:!.!.:!!:!::! etAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSerValMe 807520 : TGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAAT : 807576 431 : lArgSerMet : 433 !!:! !||| tLysValMet 807577 : GAAGGTAATG : 807587 vulgar: AfOr141P 333 433 . KQ414940.1 807287 807587 + 131 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807288 807587 131 + . gene_id 4 ; sequence AfOr141P ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807288 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807288 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807288 807587 131 + . alignment_id 4 ; Query AfOr141P ; Align 807288 334 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr165 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 263 -> 372 Target range: 807254 -> 807578 264 : ValGlyPheLeuIleValIleAlaValHisGluAspAsnSerLeuProLeuLeuLeuL : 283 ..!||||||:!!.!!:!!:!!|||:!! ! ! ! :!!!:!:!! ! !|||! ThrGlyPheValPheLeuValAlaLeuSerThrLysAspAsnVal---AlaAlaLeuA 807255 : ACAGGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTT---GCAGCATTGA : 807309 284 : ysSerValLeuPheTyrMetValIleCysLeuGluAlaPheIleTyrCysPheAlaGl : 302 :!||| !!:!!.!. :!!..!:!: :!!:!! !!:!:!!|||..!!:!||||| rgSerPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGl 807310 : GGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGG : 807366 303 : yGluTyrLeuArgIleLysSerLysLeuIleGlyAspThrAlaTyrGluPheLeuTrp : 321 |.!. |||..! ::!!!!:!! !|||!.!.!..!!||||||!!:! !|||||| yAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrp 807367 : CAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGG : 807423 322 : TyrAspLeuArgProAsnGluSerGlnLeuLeuIleProValIleLeuArgSerGlnL : 341 ||| !! !!.! !:!!! !:!!::! !|||:!! !:!!|||! !|||.!!.!.. TyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnS 807424 : TACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATT : 807483 342 : ysGlyPheThrPheThrPheGlyLysPheSerSerLeuSerLeuGluSerPheThrGl : 360 .! !!:! !.!.||| !||||||||| ! !!:!!!:!||| !!!|||! !! erProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGl 807484 : CGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGA : 807540 361 : yIleMetLysIleSerAlaSerTyrIleSerValLeu : 372 !|||:!!||| !|||!.!||||||:!:||||||:!! uIleLeuLysAlaSerGlySerTyrLeuSerValMet 807541 : GATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATG : 807578 vulgar: AfOr165 263 372 . KQ414940.1 807254 807578 + 146 M 15 45 G 1 0 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807255 807578 146 + . gene_id 1 ; sequence AfOr165 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807255 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807255 807578 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807255 807578 146 + . alignment_id 1 ; Query AfOr165 ; Align 807255 264 45 ; Align 807300 280 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr165 Target: LHQN01049708.1 Habropoda laboriosa contig49708, whole genome shotgun sequence Model: protein2genome:local Raw score: 353 Query range: 0 -> 86 Target range: 57 -> 315 1 : MetLeuValLeuAsnThrLeuSerProSerValLysPheGlyLeuHisPheAlaGlyIleTrpP : 22 |||:!!:!!! !||||||:!!|||! !||||||||||||||||||||||||!.!|||||||||| MetIleLeuArgAsnThrMetSerGlnSerValLysPheGlyLeuHisPheValGlyIleTrpP 58 : ATGATATTACGAAATACAATGAGCCAATCTGTTAAGTTTGGTCTACATTTTGTCGGTATTTGGC : 121 23 : roGlyThrAlaPheProTyrLeuHisLysLeuGlyTrpLeuAlaAlaMetValAlaLeuGlnSe : 43 |||||||| !!|||||| !|||||||||:!!||||||:!! !||||||!.!!.!||||||!! roGlyThrProPheProSerLeuHisLysIleGlyTrpValIleAlaMetAlaValLeuGlnTh 122 : CAGGAACACCATTCCCAAGTTTACATAAAATTGGTTGGGTCATAGCGATGGCTGTACTTCAAAC : 184 44 : rTyrGlnTyrArgTyrIleValMetHisTyrLysSerAspAsnLeuMetSerIleIleAspAsn : 64 !||||||||||||||||||:!!! !|||||||||||||||!:!|||||| !! !||||||||| rTyrGlnTyrArgTyrIleIleThrHisTyrLysSerAspSerLeuMetValThrIleAspAsn 185 : TTATCAGTACAGATACATCATTACGCATTATAAATCTGATAGTCTTATGGTCACAATAGATAAT : 247 65 : LeuSerIleAlaMetProPheSerLeuValPheIleLysLeuIleValThrTrpValAsnTyrG : 86 |||||||||.!!|||||||||!!!||||||...||||||||||||:::||||||!.!||||||| LeuSerIleThrMetProPheThrLeuValLeuIleLysLeuIleIleThrTrpAlaAsnTyrG 248 : TTGAGCATCACCATGCCATTCACTCTagtgttaattaaattaattattacttgGGCAAATTATG : 313 87 : ly : 86 || ly 314 : GG : 315 vulgar: AfOr165 0 86 . LHQN01049708.1 57 315 + 353 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049708.1 exonerate:protein2genome:local gene 58 315 353 + . gene_id 1 ; sequence AfOr165 ; gene_orientation . LHQN01049708.1 exonerate:protein2genome:local cds 58 315 . + . LHQN01049708.1 exonerate:protein2genome:local exon 58 315 . + . insertions 0 ; deletions 0 LHQN01049708.1 exonerate:protein2genome:local similarity 58 315 353 + . alignment_id 1 ; Query AfOr165 ; Align 58 1 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr165 Target: LHQN01049752.1 Habropoda laboriosa contig49752, whole genome shotgun sequence Model: protein2genome:local Raw score: 451 Query range: 82 -> 199 Target range: 48 -> 399 83 : ValAsnTyrGlyValPheCysAspIleLeuSerThrMetLysLysAspCysGlnLysTyrAlaV : 104 :!! !:!!.!!|||.!! !!||||||||||||||||||:!!:!!||||||||||||||||||! IlePheHisSerValLeuSerAspIleLeuSerThrMetGluGluAspCysGlnLysTyrAlaA 49 : ATATTTCACAGCGTACTTAGTGACATTTTATCAACCATGGAAGAGGATTGTCAGAAATATGCTG : 112 105 : alIleAspIleAsnAsnLeuIleSerLysThrGlyGlnIleSerPheTyrMetThrThrIleVa : 125 .!:!!|||||||||!!.|||!!:|||||||||||||||:::|||||||||:::|||:::|||:! laValAspIleAsnLysLeuMetSerLysThrGlyGlnLeuSerPheTyrLeuThrSerIleIl 113 : CTGTAGATATAAATAAGTTGATGTCAAAAACCGGACAgctatctttttatttaacaagcATTAT : 175 126 : lMetSerSerTyrLeuValSerAlaValPheTyrIleThrGlyThrLeuAlaPheGlnArgThr : 146 !||||||||||||:!!|||||||||!.!||||||||||||||||||:!!!..||||||...... eMetSerSerTyrMetValSerAlaAlaPheTyrIleThrGlyThrIleGlyPheGlnGluAsn 176 : TATGTCTTCGTATATGGTATCTGCAGCATTTTACATAACTGGTACTATTGgatttcaagaaaat : 238 147 : AsnAspSerIleSerArgGluLeuLeuPheLysMetAspLeuProPheGluThrSerGluSerP : 168 ||| !|||:!!|||||||||||||||.!.||||||||||||||||||! !||||||||||||| AsnAlaSerValSerArgGluLeuLeuLeuLysMetAspLeuProPheGlyThrSerGluSerP 239 : aatgCTTCAGTATCTAGGGAGCTCCTTCTGAAAATGGATTTGCCTTTTGGGACCAGCGAATCGC : 304 169 : roAsnTyrGluPheValValThrSerGlnPheLeuIleHisValSerAlaAlaLeuThrPheGl : 189 |||||||||||.!!|||||||||!!!||| !!|||||||||||||||||||||||||||||||| roAsnTyrGluLeuValValThrThrGlnValLeuIleHisValSerAlaAlaLeuThrPheGl 305 : CGAATTACGAACTTGTAGTAACTACACAAGTCCTTATTCACGTATCAGCGGCCTTAACATTCGG : 367 190 : yThrPheSerAlaLeuLeuLeuMetValVal : 199 |..!||||||||||||||||||||||||||| yValPheSerAlaLeuLeuLeuMetValVal 368 : TGTATTCAGTGCTCTTCTCTTAATGGTGGTA : 399 vulgar: AfOr165 82 199 . LHQN01049752.1 48 399 + 451 M 117 351 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049752.1 exonerate:protein2genome:local gene 49 399 451 + . gene_id 1 ; sequence AfOr165 ; gene_orientation . LHQN01049752.1 exonerate:protein2genome:local cds 49 399 . + . LHQN01049752.1 exonerate:protein2genome:local exon 49 399 . + . insertions 0 ; deletions 0 LHQN01049752.1 exonerate:protein2genome:local similarity 49 399 451 + . alignment_id 1 ; Query AfOr165 ; Align 49 83 351 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr165 Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 294 Query range: 308 -> 376 Target range: 824 -> 1197 309 : SerLysLeuIleGlyAspThrAlaTyrGluPheLeuTrpTyrAspLeuArgProAsnGluSe : 329 |||:!!|||||||||:!!||||||||||||||||||||||||||||||||| !!!.!||||| SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSe 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAG : 885 330 : rGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysP : 350 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| rGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysP 886 : CCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaat : 948 351 : heSerSerLeuSerLeuGluSerPheThrGly >>>> Target Intron 1 >>>> I : 361 |||||||||||||||||||||||||||||!.! 169 bp | heSerSerLeuSerLeuGluSerPheThrAla++ ++I 949 : tttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.........................agA : 1150 362 : leMetLysIleSerAlaSerTyrIleSerValLeuLeuAlaValTyr : 376 ||||||||:!!|||||||||||||||||||||||||||||||||||| leMetLysValSerAlaSerTyrIleSerValLeuLeuAlaValTyr 1151 : TCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTGTAT : 1197 vulgar: AfOr165 308 376 . LHQN01050112.1 824 1197 + 294 M 52 156 5 0 2 I 0 165 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 1197 294 + . gene_id 1 ; sequence AfOr165 ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 825 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1197 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1197 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 1197 294 + . alignment_id 1 ; Query AfOr165 ; Align 825 309 156 ; Align 1150 361 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350423776|ref|XP_003493588.1| PREDICTED: odorant receptor 67c-like [Bombus impatiens] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 747 Query range: 169 -> 400 Target range: 1307367 -> 1305879 170 : LeuProPheLeuValTrpTyrGlyThrAspIleSerAlaSerProLysPheGluIl : 188 :!!||| ! !!.! !!|||||||||||||||!!!||||||||| |||||||| ValProAsnAlaAlaArgTyrGlyThrAspIleThrAlaSerProLeuPheGluIl 1307367 : GTACCTAATGCTGCTAGGTATGGAACAGATATCACAGCATCTCCTCTCTTCGAAAT : 1307313 189 : eAlaPheValGlyGlnValMetThrAlaMetIleGlyLeuSerAlaIleThrAlaI : 207 |||||||||| !!|||:!!!!:.!!!.! .!!! ! !:!!:!!! !:!!!.!: eAlaPheValCysGlnLeuIleAlaValAlaPheValAlaAlaSerThrSerGlyL 1307312 : CGCTTTCGTTTGTCAACTGATTGCGGTTGCATTTGTGGCCGCCTCAACCTCAGGCT : 1307256 208 : leAspCysThrPheMetThrMetIleLeuHisValSerGlyGlnPheIleLeuIle : 225 !:||| ! :!!! !||||||! !||||||||||||||||||||||||! !|||||| euAspGlySerCysMetThrThrIleLeuHisValSerGlyGlnPheLysLeuIle 1307255 : TGGATGGATCATGTATGACCACGATTTTACACGTATCTGGACAATTCAAATTAATC : 1307202 226 : LysThrTrpIleAsnLysIleGlyPheGluMetSerHisLysSerIleAspMetAs : 244 !..||||||:!!!:!|||!!:||| ! |||! !:! !||| !!:!! !! ! SerThrTrpValSerLysMetGlyValGluThrAsnValLysProValTyrSerAr 1307201 : AGTACGTGGGTCAGCAAAATGGGAGTAGAAACAAATGTCAAACCTGTTTATTCGCG : 1307145 245 : pLysPheGluGluAspLeuPheLysCysIleArgHisHisGlnArgMetIle{Hi} : 262 |||!!.|||! !||||||.!!||||||||||||||||||||||||||||||{:!} gLysLeuGluValAspLeuIleLysCysIleArgHisHisGlnArgMetIle{As} 1307144 : AAAATTAGAAGTGGACCTGATCAAATGCATTCGTCATCACCAACGAATGATA{AA} : 1307091 263 : >>>> Target Intron 1 >>>> {s}ValValAsnAspValAsnAsnLeu : 270 169 bp {!}|||||||||||||||||||||||| ++ ++{n}ValValAsnAspValAsnAsnLeu 1307090 : gt.........................ag{C}GTGGTGAATGatgtgaataattta : 1306898 271 : LeuThrProIleIlePheMetGlnLeuLeuThrSerGlyLeuGluIleCysLeuSe : 289 ...|||||||||:!!|||:!:||||||||||||||||||:!!! !||||||||||| PheThrProIleValPheValGlnLeuLeuThrSerGlyIleValIleCysLeuSe 1306897 : tttactccCATCGTTTTCGTACAACTTCTTACAAGCGGAATAGTAATTTGTTTAAG : 1306841 290 : rGlyTyrAlaMetLeuAspAsnGlyThrLysIleThrAspIleLeuLysPheThrS : 308 ||||!:!|||:!:!!!||||||! !.!!::: |||||||||||||||!:!..!| rGlyPheAlaValPheAspAsnAspAlaArg---ThrAspIleLeuLysTyrValS 1306840 : TGGATTCGCGGTTTTCGATAACGACGCCCGT---ACCGATATTCTGAAATACGTAT : 1306787 309 : erTyrPheIleSerValThrValGlnLeuLeuLeuTrpCysTrpProGlyGluIle : 326 |||||!!. !|||:!! !:!!||||||||||||||||||! !|||||||||||| erTyrLeuSerSerIleTrpLeuGlnLeuLeuLeuTrpCysLeuProGlyGluIle 1306786 : CTTATTTGTCCTCGATTTGGTTGCAACTTTTGTTATGGTGTTTGCCCGGTGAAATT : 1306733 327 : LeuValGlnGluSerGlnGluValGlyGlnValValTyrPheSerValProTrpTy : 345 ||||||||||||||| !|||:!!|||!!.|||||||||!!.!:!||||||||||| LeuValGlnGluSerLeuGluIleGlyHisValValTyrLeuAsnValProTrpTy 1306732 : CTCGTTCAAGAGAGTTTAGAAATAGGACACGTAGTCTACTTAAATGTACCATGGTA : 1306676 346 : rAsnLeuProProIleTyrArgAsnHisValCysLeuMetIleIleArgAlaGlnG : 364 |||||||||||||||||||!:!!.. ! :!!|||:!!||||||:!!|||||||||| rAsnLeuProProIleTyrGlnArgLysLeuCysMetMetIleLeuArgAlaGlnG 1306675 : CAATTTGCCGCCAATTTACCAGAGAAAACTTTGCATGATGATCCTTAGGGCACAAC : 1306619 365 : lnTyrCysSerIleThrAlaLeuThrPheLysValLeuSerIleGlnThrLeuThr : 382 |||||||||||||||||||||||||||||::!..!|||||||||!!.||||||||| lnTyrCysSerIleThrAlaLeuThrPheArgThrLeuSerIleHisThrLeuThr 1306618 : AATATTGCAGCATCACGGCATTAACGTTTCGAACGTTGTCTATTCACACGTTAACG : 1306565 383 : Ala >>>> Target Intron 2 >>>> ValPheAsnThrAlaIleSerTyr : 391 ::! 629 bp ||||||||||||||| !|||||| Ser++ ++ValPheAsnThrAlaAlaSerTyr 1306564 : AGCgt.........................agGTATTCAATACAGCCGCTTCATAT : 1305909 392 : PheThrValLeuGlnGlnMetGlnGln : 400 ||||||:!!|||!:!|||||||||||| PheThrLeuLeuArgGlnMetGlnGln 1305908 : TTCACTTTGCTGCGACAAATGCAACAA : 1305880 vulgar: gi|350423776|ref|XP_003493588.1| 169 400 . KQ414608.1 1307367 1305879 - 747 M 92 276 S 0 2 5 0 2 I 0 165 3 0 2 S 1 1 M 37 111 G 1 0 M 83 249 5 0 2 I 0 625 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1305880 1307367 747 - . gene_id 1 ; sequence gi|350423776|ref|XP_003493588.1| ; gene_orientation + KQ414608.1 exonerate:protein2genome:local cds 1307090 1307367 . - . KQ414608.1 exonerate:protein2genome:local exon 1307090 1307367 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1307088 1307089 . - . intron_id 1 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1306921 1307089 . - . intron_id 1 KQ414608.1 exonerate:protein2genome:local splice3 1306921 1306922 . - . intron_id 0 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1306560 1306920 . - . KQ414608.1 exonerate:protein2genome:local exon 1306560 1306920 . - . insertions 0 ; deletions 1 KQ414608.1 exonerate:protein2genome:local splice5 1306558 1306559 . - . intron_id 2 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1305931 1306559 . - . intron_id 2 KQ414608.1 exonerate:protein2genome:local splice3 1305931 1305932 . - . intron_id 1 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1305880 1305930 . - . KQ414608.1 exonerate:protein2genome:local exon 1305880 1305930 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1305880 1307367 747 - . alignment_id 1 ; Query gi|350423776|ref|XP_003493588.1| ; Align 1307368 170 276 ; Align 1306920 263 111 ; Align 1306809 301 249 ; Align 1305931 384 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350423776|ref|XP_003493588.1| PREDICTED: odorant receptor 67c-like [Bombus impatiens] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 218 Query range: 4 -> 73 Target range: 1308248 -> 1308041 5 : SerThrThrPheAspTyrTyrIleLeuProAsnLysIlePheCysSerIleValGl : 23 !.!|||:!!.!!|||||||||||||||||||||||||||.!.|||.!!!!:!.!|| LysThrSerIleAspTyrTyrIleLeuProAsnLysIleLeuCysGlyMetAlaGl 1308248 : AAAACGTCGATCGACTATTATATACTACCGAATAAAATCCTGTGCGGTATGGCCGG : 1308194 24 : yIleTrpProIleGlyGluArgSerSerThrCysSerLysIlePheAlaTyrPheA : 42 |:!!|||||||||! !|||!:!||||||||| !!!!!|||:!!||||||||||||| yValTrpProIleAspGluLysSerSerThrArgThrLysLeuPheAlaTyrPheA 1308193 : TGTCTGGCCTATCGACGAGAAAAGTTCAACGCGTACCAAACTATTCGCATACTTTC : 1308137 43 : rgLeuIleValSerLeuIleAlaIleSerAsnPhePheValProGluIleMetAla : 60 |||||||| !!.!!|||:!:|||:!!!:!!:!.!.!!.||||||||||||||| ! rgLeuIlePheGlyLeuValAlaLeuAsnSerMetLeuValProGluIleMetMet 1308136 : GGCTGATATTCGGATTAGTGGCACTCAATAGCATGTTAGTGCCAGAAATTATGATG : 1308083 61 : ValAlaPheTyrTrpGlyAspValGluThrValIleGly : 73 ||| !! !!||||||:!!:!!..!! !:!! !||| ValIleSerAsnTrpGlyAsnLeuArgIleLeuAlaGly 1308082 : GTAATATCGAATTGGGGCAACTTAAGGATCCTAGCAGGC : 1308042 vulgar: gi|350423776|ref|XP_003493588.1| 4 73 . KQ414608.1 1308248 1308041 - 218 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1308042 1308248 218 - . gene_id 2 ; sequence gi|350423776|ref|XP_003493588.1| ; gene_orientation . KQ414608.1 exonerate:protein2genome:local cds 1308042 1308248 . - . KQ414608.1 exonerate:protein2genome:local exon 1308042 1308248 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1308042 1308248 218 - . alignment_id 2 ; Query gi|350423776|ref|XP_003493588.1| ; Align 1308249 5 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 158 -> 223 Target range: 204023 -> 204218 159 : ArgValLeuProPheLysMetTrpValAspLeuProLeuSerValThrProTyrTyrG : 178 !:!:!!!!!||| ! ::: :::|||! !|||||||||!:!| LysLeuPheProValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheG 204024 : AAGCTTTTTCCGGTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTG : 204081 179 : luIleMetPheValIleGlnLeuAlaThrValGlnGlnIleGlyValThrTyrLeuCy : 197 |||||||||||:!!:!!|||:!!||||||:!! ! !!!:!.!:!! !|||:!! ! luIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGl 204082 : AGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGG : 204138 198 : sAsnAspAsnPheLeuCysIleLeuAsnMetHisValIleCysGlnPheArgMetLeu : 216 ! !|||||||||!!! ! ||||||! !:!:|||:!! ! !!|||!!...!! ||| yValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeu 204139 : TGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTT : 204195 217 : HisAsnArgLeuLeuAsnLeu : 223 !.!!..|||||| !|||:!! ArgThrArgLeuAlaAsnIle 204196 : CGTACACGACTTGCAAACATA : 204218 vulgar: gi|350425896|ref|XP_003494267.1| 158 223 . KQ414617.1 204023 204218 + 121 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204024 204218 121 + . gene_id 1 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204024 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 204024 204218 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204024 204218 121 + . alignment_id 1 ; Query gi|350425896|ref|XP_003494267.1| ; Align 204024 159 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 174 -> 224 Target range: 204068 -> 204218 175 : ThrProTyrPheGluIleGluPheIleIleGlnValLeuCysLeuTyrHisValGlyV : 194 |||||||||||||||||| !|||:!!:!!|||:!! ! !||| :!!!.!: ThrProTyrPheGluIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaL 204069 : ACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCAC : 204126 195 : alCysTyrLeuCysPheAspAsnIleLeuCysIleMetAsnLeuHisThrAlaGlyGl : 213 !!||||||:!! !! !!||||||.!!!!! ! |||:!!! !||||||! !..!||||| euCysTyrIleGlyValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGl 204127 : TTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCA : 204183 214 : nPheArgIleLeuGlnTyrArgLeuGluAsnMet : 224 |!!...!! !|||!:: ||||||! !|||!!: nLeuGluAsnLeuArgThrArgLeuAlaAsnIle 204184 : ATTGGAAAATCTTCGTACACGACTTGCAAACATA : 204218 vulgar: gi|350425958|ref|XP_003494287.1| 174 224 . KQ414617.1 204068 204218 + 111 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204069 204218 111 + . gene_id 1 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204069 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 204069 204218 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204069 204218 111 + . alignment_id 1 ; Query gi|350425958|ref|XP_003494287.1| ; Align 204069 175 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425706|ref|XP_003494207.1| PREDICTED: odorant receptor 13a-like, partial [Bombus impatiens] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 208 Query range: 26 -> 208 Target range: 203567 -> 204218 27 : IleValThrPheThrPheIleCysAla<->ProGlnThrAlaAsnLeuValLeuLysS : 45 :!::!!! !.!! !|||:!!|||!.! ||| ! !::!|||:!! !:!!! ValLeuIleIleLeuPheValCysValLeuProCysLeuTyrSerLeuIleLysGlnC 203568 : GTGCTGATAATCCTCTTCGTTTGTGTACTTCCTTGCCTCTACTCTTTGATCAAACAAT : 203625 46 : erThrAsnLeuAspGluIleIleGluAsnLeuSerIleAsnIleProIleAlaPheAl : 64 !! !!:!||| ! !:!:|||!!:||||||||| !!.!||||||:!:.!!.!..! ysAspSerLeuMetAlaValIleAspAsnLeuSerTyrThrIleProLeuThrIleTh 203626 : GTGACAGTTTAATGGCGGTGATAGATAATCTTTCATATACTATTCCTTTGACAATAAC : 203682 65 : aLeuValLysGlnIleValLeuArgTyrTyrLysLys{A} >>>> Target Intr : 77 !|||:!!||| ! ||||||:!! ! ! ! |||:::{!} 93 bp rLeuMetLysTyrIleValIleLeuSerLysLysGlu{V}++ 203683 : ACTGATGAAGTATATCGTTATATTGAGTAAAAaggaa{g}gt................ : 203724 78 : on 1 >>>> {la}LeuThrLeuLeuLeuSerGlnMetPheAspAspTrpAsnGluP : 92 {.!}||| !! !|||:!!!:!..!!!: !!:|||||| :!! ++{al}LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysL 203725 : .........ag{TT}CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGT : 203859 93 : roIleAlaAsnGlnAspArgGlnThrMetLeuLysAsnAlaLysIleSerArgMetIl : 111 !! !.!!:!! !!:|||.!...!|||:!!:!!....!!::!|||!!!||| ! euLysThrAspPheGluArgAspValMetIleGlnArgThrArgIleThrArgAlaTh 203860 : TGAAAACGGATTTCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAAC : 203916 112 : eSerIleValCysSerThrLeuThrTyrLeuMetLeuPheAlaPheIleSerLeuGln : 130 !||||||:!! !!! !.!!|||! !!:! ! :!!.!. !.!.||| !|||! ! rSerIleLeuSerTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuPro 203917 : CAGTATACTGAGTTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCA : 203973 131 : IleTrp<-><->SerAsnMetGlnSerAlaSerGluAlaAspLeuGlyGlyLeuLeuH : 148 ! ! !!!!.!! ! !.!!!:!|||.!!:!!:!! ! !|||!!!! ArgThrGlyIleThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheP 203974 : AGAACCGGTATTACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTC : 204033 149 : is<->ProAlaThrPheProTyrAspIleSerLysSerProAsnPheGluIleThrTr : 166 |||... ::: ||||||||||||:!!!!!||| !!|||||||||! !!: roValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPh 204034 : CGGTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTT : 204090 167 : pLeuGlyGlnPheMetGlyThrValLeuThrAlaIleCysTyrSerCysPheAspThr : 185 :||| !|||.!. ! !||||||! !|||:!!||||||! ! !! !!|||!.! eLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsn 204091 : TCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAAT : 204147 186 : PheLeuAlaValLeuValLeuHisLeuCysGlyGlnLeuThrValLeuArgMetAlaL : 205 |||!!!!.!:!!|||:!!||||||:!!|||||||||||| ! !||||||! !| PhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgL 204148 : TTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGAC : 204207 206 : euGluAspLeu : 208 ||! !:!!:!! euAlaAsnIle 204208 : TTGCAAACATA : 204218 vulgar: gi|350425706|ref|XP_003494207.1| 26 208 . KQ414617.1 203567 204218 + 208 M 9 27 G 0 3 M 41 123 S 0 1 5 0 2 I 0 89 3 0 2 S 1 2 M 55 165 G 0 6 M 16 48 G 0 3 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203568 204218 208 + . gene_id 1 ; sequence gi|350425706|ref|XP_003494207.1| ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203568 203721 . + . KQ414617.1 exonerate:protein2genome:local exon 203568 203721 . + . insertions 3 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 203722 203723 . + . intron_id 1 ; splice_site "gt" KQ414617.1 exonerate:protein2genome:local intron 203722 203814 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 203813 203814 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 203815 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 203815 204218 . + . insertions 9 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203568 204218 208 + . alignment_id 1 ; Query gi|350425706|ref|XP_003494207.1| ; Align 203568 27 27 ; Align 203598 36 123 ; Align 203817 78 165 ; Align 203988 133 48 ; Align 204039 149 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 158 -> 226 Target range: 204023 -> 204227 159 : ArgValLeuProPheAsnMetTrpIleAspLeuProLeuThrValThrProTyrTyrG : 178 !:!:!!!!!||| ! ::: ::::!!! !|||||||||!:!| LysLeuPheProValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheG 204024 : AAGCTTTTTCCGGTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTG : 204081 179 : luIleIlePheValLeuGlnValLeuSerLeuTyrHisIleGlyIleSerTyrPheCy : 197 |||||!!:|||:!!||||||:!! !!!!||| !!:!.!:!!!!!|||.!! ! luIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGl 204082 : AGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGG : 204138 198 : sPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGlnPheArgValLeu : 216 ! !!|||||||||!!! ! |||:!!! !||||||:!!..!||||||!!...! !||| yValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeu 204139 : TGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTT : 204195 217 : GlnTyrArgIleAlaAsnMetProAspLeu : 226 !:: |||:!!||||||!!: ! !!||| ArgThrArgLeuAlaAsnIleLysHisLeu 204196 : CGTACACGACTTGCAAACATAAAACATTTG : 204227 vulgar: gi|350425964|ref|XP_003494289.1| 158 226 . KQ414617.1 204023 204227 + 121 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204024 204227 121 + . gene_id 1 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204024 204227 . + . KQ414617.1 exonerate:protein2genome:local exon 204024 204227 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204024 204227 121 + . alignment_id 1 ; Query gi|350425964|ref|XP_003494289.1| ; Align 204024 159 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350424935|ref|XP_003493960.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 902 Query range: 0 -> 369 Target range: 3163849 -> 3165542 1 : MetHisThrLeuArgTrpThrPheAlaLeuLeuThrLeuThrGlyLeuIleArgPr : 19 ||| !..!|||!:!! |||! !||||||! !:!!:!!|||! ! !! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 3163850 : ATGAGTGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTACCTGCC : 3163904 20 : oSerThrTrpLysTyrLeuTrpLysArgValLeuTyrAspValTyrThrIleValV : 38 | !:!!|||! ! ! !!:::!!||| !||||||:!!:!!||| !:!: !! oHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheT 3163905 : CCATTCGTGGACAACGCCGTTCGAAAGGTCTTTGTACAATATCTACGGGGTGTTCT : 3163961 39 : alLeuLeuLeuLeuPheSerPheGluThrSerLeuIleLeuAspLeuValIleAsn : 56 !|||||||||||| !|||.!!! !|||! !|||||||||:!!!.!|||||| yrLeuLeuLeuLeuSerSerLeuAlaLeuSerGlnIleLeuAspValAlaIleAsn 3163962 : ACTTGCTTCTTCTAAGCAGCCTCGCCCTCTCGCAAATATTAGACGTAGCGATCAAC : 3164015 57 : ValAspAsnGlnAspAspPheSerGluAsnLeuTyrValThrLeuValLeuPheSe : 75 |||!!:!:!|||||||||||||||:::|||... :::||| !|||:!!||| ValGluSerGlnAspAspPheSerAspAsnPheSerIleThrAlaValValPheLe 3164016 : GTGGAGAGCCAGGATGACTTCagtgacaatttttctatcaccGCTGTGGTGTTTCT : 3164072 76 : rSerCysCysLysAlaLeuValLeuLeuIleTyrArgGlyAsnIleGluIleLeuM : 94 !!!!!! ! !||| !! !:!!||||||||| |||||||||.!! !.!!|||! uThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuI 3164073 : CACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGA : 3164129 95 : etGlyValLeuLeuGluLysProPheValProValAsnAspGluGluIleGluIle : 112 !:! !..!|||! !.!.||||||||| !||||||:!! ||||||! !|||||| leAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIle 3164130 : TCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATT : 3164183 113 : ArgThrLysPheGluGluArgIle{Gl} >>>> Target Intron 1 >>>> : 121 |||.!!|||||||||:!!! !! !{||} 107 bp ArgAlaLysPheGluLysIleThr{Gl}++ + 3164184 : AGAGCGAAATTCGAGAAGATCACC{GA}gt.........................a : 3164317 122 : {u}TrpAsnSerLysAlaTyrSerPheValLeuHisPhePheValAlaTrpLeuT : 139 {|}||||||!!!! !.!|||!!! !:!!||| .!!! !!.! !|||:!!! +{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleCysAlaPheTrpIleT 3164318 : g{A}TGGAACACGATTGGCTACTGGAGTTTACTATTAATTTGTGCGTTCTGGATAT : 3164371 140 : rpIleGlyAlaPheLeuThrAspPheArgHisGlyArgLeuLysPheArgAlaTrp : 157 :::!: !!:!!.!!||||||||||||!!! ! !!!:!|||! !|||||||||||| yrValArgSerLeuLeuThrAspPheSerSerArgLysLeuMetPheArgAlaTrp 3164372 : ACGTGAGATCGCTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGCATGG : 3164425 158 : IleProTyrAspTyrAsnSerProLeuLeuPheLeuPheSerPheIleHisGlnIl : 176 :!!||||||||||||::! !! !!! !:!!|||:!!.!!!!!|||:!!|||||| LeuProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAl 3164426 : TTACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGC : 3164482 177 : eLeuAlaThrIlePheSerThrAsnLeuAsnIleValCysAspCysLeuPheSerG : 195 !:!!|||.!!! .!.!!! !!.!! !!:!:!!..! |||! !|||!:!!!!| aIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrG 3164483 : TATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTG : 3164539 196 : lyIleLeuIleHisIleTyrCysGlnPheGluIleLeuGluHisArgMetLysAsn : 213 ||:!:||||||:!!|||||||||||||||||||||||||||||||||:!:!:!||| lyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsn 3164540 : GCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAAC : 3164593 214 : IleThrThrAspLysAspTyrSerAlaLysPheCysAlaHisHisHisHisArgIl : 232 :!!! !|||!!::!!||| !!|||!.!||| ||||||!!.|||||| !!||||| ValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIl 3164594 : GTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTAT : 3164650 233 : eTyr{Ly} >>>> Target Intron 2 >>>> {s}PheAlaSerMetValA : 240 ||||{:!} 325 bp {!}|||:!!!.!! !|||| eTyr{Gl}++ ++{n}PheSerLysLysValA 3164651 : ATAC{CA}gt.........................ag{A}TTTTCGAAAAAGGTGA : 3164999 241 : snAspAsnPheLysMetIleMetSerMetGlnPheLeuIleSerThrGlyAlaVal : 258 ||!!:.!.||||||:!!|||:!!! ! ||||||! !||||||! !..!!.!:!! snGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIle 3165000 : ACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATC : 3165053 259 : CysPheAsnLeuTyrArgLeuSerValMetGluPheGlyProLysPheMetGluTh : 277 ||||||||||||||||||:!!!!! !!!::!!.!.! ||||||:::||| CysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIl 3165054 : TGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaat : 3165110 278 : rAlaThrTyrThrLeuCysLeuLeuMetGlnValPheTyrTyrCysTrpTyrGlyA : 296 ! !|||:!!!!!||| !:!!! !|||:!!|||||||||||||||||||||| eIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyA 3165111 : caTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGGCA : 3165167 297 : snGluValLysLeuLys >>>> Target Intron 3 >>>> SerLeuGluI : 305 |||||||||||! !||| 80 bp ||||||:!!: snGluValLysHisLys++ ++SerLeuGlnL 3165168 : ACGAAGTGAAACATAAGgt.........................agAGCCTCCAAC : 3165274 306 : leProAsnAlaValLeuGluSerAsnLeuProPheLeuAsnAspSerSerLysLys : 323 !!||| !! !:!!!!!.!.|||:!!! ! !!! !||||||:!!!:! !! !:! euProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArg 3165275 : TTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGA : 3165328 324 : IleLeuLeuLeuIleMetArgArgSerLeuGluProIleGluPheThrSerCysHi : 342 !||||||:!!!!:|||||||||:!!:!!..!|||||||||||||||||| !|| AlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheThrSerIleHi 3165329 : GCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCA : 3165385 343 : sValIleSerMetAsnLeuGluSerPheAlaIle >>>> Target Intron 4 : 354 ||||:!!|||:!!||||||||||||||| ! ! 74 bp sValValSerValAsnLeuGluSerPheMetAla++ 3165386 : CGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt.................... : 3165423 355 : >>>> LeuLeuLysThrSerTyrSerAlaTyrAsnLeuLeuGlnGlnSerLys : 369 :!!:!!||||||||||||||||||!:!|||:!!:!!|||||||||||| ++ValIleLysThrSerTyrSerAlaPheAsnMetIleGlnGlnSerLys 3165424 : .....agGTAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAACAAAGCAAA : 3165542 vulgar: gi|350424935|ref|XP_003493960.1| 0 369 . KQ414646.1 3163849 3165542 + 902 M 120 360 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 112 336 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 67 201 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3163850 3165542 902 + . gene_id 1 ; sequence gi|350424935|ref|XP_003493960.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3163850 3164211 . + . KQ414646.1 exonerate:protein2genome:local exon 3163850 3164211 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164212 3164213 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164212 3164318 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3164317 3164318 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164319 3164657 . + . KQ414646.1 exonerate:protein2genome:local exon 3164319 3164657 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164658 3164659 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164658 3164982 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3164981 3164982 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164983 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164983 3165184 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165185 3165186 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165185 3165264 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3165263 3165264 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165265 3165420 . + . KQ414646.1 exonerate:protein2genome:local exon 3165265 3165420 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165421 3165422 . + . intron_id 4 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165421 3165494 . + . intron_id 4 KQ414646.1 exonerate:protein2genome:local splice3 3165493 3165494 . + . intron_id 3 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165495 3165542 . + . KQ414646.1 exonerate:protein2genome:local exon 3165495 3165542 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3163850 3165542 902 + . alignment_id 1 ; Query gi|350424935|ref|XP_003493960.1| ; Align 3163850 1 360 ; Align 3164320 122 336 ; Align 3164984 235 201 ; Align 3165265 302 156 ; Align 3165495 354 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350424935|ref|XP_003493960.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 859 Query range: 0 -> 369 Target range: 3152421 -> 3154098 1 : MetHisThrLeuArgTrpThrPheAlaLeuLeuThrLeuThrGlyLeuIleArgPr : 19 ||| !!||||||!!!||||||||| !|||||||||:!!!.!|||:!!:!: !|| MetAspThrLeuSerTrpThrPheLysLeuLeuThrValAsnGlyIleLeuAlaPr 3152422 : aTGGATACTCTAAGCTGGACGTTCAAGCTTCTGACGGTGAACGGTATTCTGGCACC : 3152476 20 : oSerThrTrpLysTyrLeuTrpLysArgValLeuTyrAspValTyrThrIleValV : 38 ||||.!!!::! !! !! !|||:!!! !:!!||||||! :!!|||! !.!! !!: oSerAlaPheMetSerGlnTrpGlnThrIleLeuTyrGlyMetTyrMetPhePheM 3152477 : GTCCGCTTTCATGTCTCAGTGGCAGACGATTTTGTACGGGATGTACATGTTCTTCA : 3152533 39 : alLeuLeuLeuLeuPheSerPheGluThrSerLeuIleLeuAspLeuValIleAsn : 56 !!:!!! !:!!|||!:!:!!.!.||| !!!!|||||||||! !:!!:!!.!!||| etValSerMetLeuTyrAlaMetGluCysCysLeuIleLeuGlyMetIlePheAsn 3152534 : TGGTGTCGATGCTCTACGCGATGGAGTGCTGCCTGATCTTGGGCATGATATTCAAC : 3152587 57 : ValAspAsnGlnAspAspPheSerGluAsnLeuTyrValThrLeuValLeuPheSe : 75 ||||||!:!|||!!:|||||||||||||||||||||:!!||||||:!!|||.!.!! ValAspSerGlnGluAspPheSerGluAsnLeuTyrIleThrLeuIleLeuMetCy 3152588 : GTGGACAGTCAGGAGGATTTCAGCGAGAATCTGTATATCACGTTGATACTGATGTG : 3152644 76 : rSerCysCysLysAlaLeuValLeuLeuIleTyrArgGlyAsnIleGluIleLeuM : 94 !|||||||||||| !! !:!!|||:!!! !! ! ! !...|||:!!:!!:!!: sSerCysCysLysIleTyrMetLeuValThrSerAlaLysGlyIleLysValMetV 3152645 : CAGCTGTTGCAAAATCTACATGCTGGTCACTTCTGCGAAGGGGATCAAAGTTATGG : 3152701 95 : etGlyValLeuLeuGluLysProPheValProValAsnAspGluGluIleGluIle : 112 !!! !||||||! !|||:!!||||||||||||:!!||| ||||||! !|||||| alAspValLeuArgGluGluProPheValProMetAsnArgGluGluAsnGluIle 3152702 : TGGACGTCCTTCGAGAGGAGCCTTTCGTGCCTATGAACAGAGAAGAGAACGAGATT : 3152755 113 : ArgThrLysPheGluGluArgIle{Gl} >>>> Target Intron 1 >>>> : 121 |||..!!:!|||||||||!:!|||{!!} 330 bp ArgValArgPheGluGluLysIle{As}+- + 3152756 : AGAGTGAGATTCGAGGAGAAAATC{GA}ga.........................a : 3153112 122 : {u}TrpAsnSerLysAlaTyrSerPheValLeuHisPhePheValAlaTrpLeuT : 139 {:}||||||:!!|||||||||!!!!:! !!||| !!.!!!!.|||!.! |||| +{p}TrpAsnAlaLysAlaTyrThrTyrPheLeuAspIleLeuValValValLeuT 3153113 : g{T}TGGAACGCTAAGGCTTACACATATTTCCTGGACATCTTGGTAGTCGTTTTAT : 3153166 140 : rpIleGlyAlaPheLeuThrAspPheArgHisGlyArgLeuLysPheArgAlaTrp : 157 ||||| !:!!!:!!!!||||||!:!|||... :::...|||||||||..!||| rpIleThrSerTyrPheThrAspTyrArgArgArgLysPheLysPheArgValTrp 3153167 : GGATAACATCGTACTTCACGGACTACAGGcgcagaaaattcaaatttcgcgtCTGG : 3153220 158 : IleProTyrAspTyrAsnSerProLeuLeuPheLeuPheSerPheIleHisGlnIl : 176 :!!||||||||| !!.!!!!! !! !:!!||| !.!.! !!:! !!!.||||| LeuProTyrAspThrThrThrGlnProValPheThrLeuIleTyrCysGlnGlnIl 3153221 : TTACCTTACGACACTACTACACAACCTGTCTTCACTCTGATCTACTGTCAACAGAT : 3153277 177 : eLeuAlaThrIlePheSerThrAsnLeuAsnIleValCysAspCysLeuPheSerG : 195 |:!!..!||| !:!|||..!|||:!!|||:!!:!!||||||||||||||||||| eValCysThrTrpTyrSerValAsnIleAsnValIleCysAspCysLeuPheSerG 3153278 : CGTCTGCACGTGGTACAGCGTGAATATTAACGTCATTTGCGACTGCCTGTTCAGCG : 3153334 196 : lyIleLeuIleHisIleTyrCysGlnPheGluIleLeuGluHisArgMetLysAsn : 213 ||:!::!!|||!!.|||! !! !!...!! :!!:!!! !! ! !::!||| lyLeuMetIleGlnIleCysSerIleLeuArgLysMetLysProThrArgArgAsn 3153335 : GCCTGATGATACAGATTTGCTCAATCTTACGGAAGATGAAACCTACTCGGCGAAAC : 3153388 214 : IleThrThrAspLysAspTyrSerAlaLysPheCysAlaHisHisHisHisArgIl : 232 !..! !! !! !!!! !! ! ! :!!!........ ::: CysValLeuValThrIleIleArgTyrThrSerGlnSerArgGlnGluIleLysAr 3153389 : TGTGTGCTCGTCACCATAATCAGATATACAAGCCAGTCTCGacaagaaattaaacg : 3153445 233 : eTyrLys<->PheAlaSerMetValAsnAspAsnPheLysMetIleMetSerMetG : 250 ||| !!.|||..!!!:||||||!!:!!..!! !! :!! !|||!!:| gTyrVal***LeuAlaGlnIleValAsnGluLysLeuGlyAsnValSerSerIleG 3153446 : atacgTTTGATTGGCGCAAATAGTGAACGAGAAGCTTGGAAATGTCTCGAGTATAC : 3153502 251 : lnPheLeuIleSerThrGlyAlaValCysPheAsnLeuTyrArgLeuSerValMet : 268 ||||| !|||||||||||||||:!!||||||||||||||||||:!!||||||!!: lnPheAlaIleSerThrGlyAlaIleCysPheAsnLeuTyrArgMetSerValIle 3153503 : AGTTCGCGATAAGCACAGGAGCGATATGCTTCAATCTCTATCGAATGTCGGTGATA : 3153556 269 : GluPheGlyProLysPheMetGluThrAlaThrTyrThrLeuCysLeuLeuMetGl : 287 |||.!!||||||||||||:!!|||.!! !||| !|||:!!||||||||| !|| GluLeuGlyProLysPheValGluAlaLeuThrIleThrValCysLeuLeuAlaGl 3153557 : GAACTCGGTCCAAAGTTTGTGGAAGCGTTAACTATCACAGTATGCTTACTCGCGCA : 3153613 288 : nValPheTyrTyrCysTrpTyrGlyAsnGluValLysLeuLys >>>> Target : 302 |:!!||||||||||||||||||||||||::: ... ! 5 nIlePheTyrTyrCysTrpTyrGlyAsnAspArgAsnTyrAsp-- 3153614 : GATATTTTACTATTGTTGGTAcggtaacgatagaaattacgATag........... : 3153660 303 : Intron 2 >>>> SerLeuGluIleProAsnAlaValLeuGluSerAsnLeuP : 315 3 bp |||||||||||| !:!! !||| !.!.||||||:!! ++SerLeuGluIleValAspArgValThrAsnSerAsnIleT 3153661 : ..............agAGTCTCGAAATTGTGGACAGAGTAACGAACAGTAATATAA : 3153750 316 : roPheLeuAsnAspSerSerLysLysIleLeuLeuLeuIleMetArgArgSerLeu : 333 !! ! ! !:!!!!:||||||||||||||||||:!!|||!!:!!:||||||:!!||| hrValSerAspGluSerSerLysLysIleLeuValLeuMetIleArgArgAlaLeu 3153751 : CCGTGTCGGACGAAAGCTCCAAGAAGATTCTGGTATTGATGATACGACGAGCTTTG : 3153804 334 : GluProIleGluPheThrSerCysHisValIleSerMetAsnLeuGluSerPheAl : 352 ||||||:!!|||||||||.!! !!.!:!!!!:|||:!:|||||||||||||||.! GluProValGluPheThrGlyLeuArgIleMetSerValAsnLeuGluSerPheTh 3153805 : GAGCCTGTCGAGTTCACCGGCCTTCGTATCATGTCTGTTAATCTCGAGTCATTCAC : 3153861 353 : aIle >>>> Target Intron 3 >>>> LeuLeuLysThrSerTyrSerAl : 361 ! 184 bp |||||||||:!!||||||:!!|| rSer++ ++LeuLeuLysSerSerTyrAlaAl 3153862 : GTCGgt.........................agCTGTTGAAATCCTCCTACGCGGC : 3154072 362 : aTyrAsnLeuLeuGlnGlnSerLys : 369 |!:!|||:!!||||||::: ::: aPheAsnMetLeuGlnGluArgArg 3154073 : TTTCAATATGCTCCaggaaagaagg : 3154098 vulgar: gi|350424935|ref|XP_003493960.1| 0 369 . KQ414646.1 3152421 3154098 + 859 M 120 360 S 0 2 5 0 2 I 0 326 3 0 2 S 1 1 M 113 339 G 0 3 M 67 201 5 0 2 I 0 49 3 0 2 M 52 156 5 0 2 I 0 180 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3152422 3154098 859 + . gene_id 2 ; sequence gi|350424935|ref|XP_003493960.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3152422 3152783 . + . KQ414646.1 exonerate:protein2genome:local exon 3152422 3152783 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3152784 3152785 . + . intron_id 1 ; splice_site "GA" KQ414646.1 exonerate:protein2genome:local intron 3152784 3153113 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3153112 3153113 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3153114 3153657 . + . KQ414646.1 exonerate:protein2genome:local exon 3153114 3153657 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3153658 3153659 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local intron 3153658 3153710 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3153709 3153710 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3153711 3153866 . + . KQ414646.1 exonerate:protein2genome:local exon 3153711 3153866 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3153867 3153868 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3153867 3154050 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3154049 3154050 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3154051 3154098 . + . KQ414646.1 exonerate:protein2genome:local exon 3154051 3154098 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3152422 3154098 859 + . alignment_id 2 ; Query gi|350424935|ref|XP_003493960.1| ; Align 3152422 1 360 ; Align 3153115 122 339 ; Align 3153457 235 201 ; Align 3153711 302 156 ; Align 3154051 354 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350424935|ref|XP_003493960.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 752 Query range: 0 -> 368 Target range: 3159620 -> 3161363 1 : MetHisThrLeuArgTrpThrPheAlaLeuLeuThrLeuThrGlyLeuIleArgPr : 19 ||||||||||||!:!! !:!!!!. ! !||||||:!! !|||! !|||||||| MetHisThrLeuGlnLeuSerLeuLysThrLeuThrIleCysGlyTyrIleArgPr 3159621 : ATGCACACGTTGCAATTGTCGTTGAAAACTTTGACGATTTGCGGCTACATAAGGCC : 3159675 20 : oSerThrTrpLysTyrLeuTrpLysArgValLeuTyrAspValTyrThrIleValV : 38 |!!!:!!||||||! ! ! !! !!:!:!!||||||:!!|||:!!|||:!!..!| oThrSerTrpLysSerProGlyLeuLysLeuLeuTyrAsnValHisThrValThrV 3159676 : AACATCGTGGAAGTCACCGGGGCTAAAGCTTCTCTATAACGTACACACGGTTACTG : 3159732 39 : alLeuLeuLeuLeuPheSerPheGluThrSerLeuIleLeuAspLeuValIleAsn : 56 ||:!!:!!:!!||| !!!!||| ..!:!!! !|||||||||::::::...||| alValValValLeuSerThrPhePheValAlaGlnIleLeuAspIleIlePheAsn 3159733 : TAGTGGTAGTTCTTAGCACGTTTTTCGTCGCCCAGATATTggacattattttcaac : 3159786 57 : ValAspAsnGlnAspAspPheSerGluAsnLeuTyrValThrLeuValLeuPheSe : 75 |||!!:|||||||||!!:||||||!!:|||!!!! !:!!|||! ! !:!!.!.!: ValGluAsnGlnAspGluPheSerAspAsnPheCysIleThrCysCysValMetAs 3159787 : gtgGAGAATCAAGACGAGTTTAGCGACAATTTCTGCATAACGTGCTGCGTGATGAA : 3159843 76 : rSerCysCysLysAlaLeuValLeuLeuIleTyrArgGlyAsnIleGluIleLeuM : 94 !||| ! ! ||| !! ! !||||||||| |||! !! |||:!!! !|||! nSerLeuGlyLysLeuTyrSerLeuLeuIleGlyArgGluMetIleGlnAsnLeuI 3159844 : CAGCCTTGGAAAGTTGTACAGCTTGCTGATAGGACGAGAAATGATCCAAAATTTAA : 3159900 95 : etGlyValLeuLeuGluLysProPheValProValAsnAspGluGluIleGluIle : 112 !:! ! !|||! !... ! |||.!! !|||:!!:!!!!:! !|||! !|||||| leAspSerLeuGlnSerAspProLeuArgProLeuAspGluValGluAsnGluIle 3159901 : TAGACTCGCTACAAAGTGACCCTCTTAGGCCGTTGGACGAAGTGGAGAATGAAATT : 3159954 113 : ArgThrLysPheGluGluArgIle{Gl} >>>> Target Intron 1 >>>> : 121 ||| !!:! !|||:!!! !|||{||} 73 bp ArgLeuArgHisGluLysThrIle{Gl}++ + 3159955 : CGATTGAGACACGAGAAGACAATC{GA}gt.........................a : 3160054 122 : {u}TrpAsnSerLysAlaTyrSerPheValLeuHisPhePheValAlaTrpLeuT : 139 {|} ! !|||! !||||||!!! !! ! ! .!. !!.!.!! ! :!!| +{u}LysLeuSerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValT 3160055 : g{A}AAGCTCTCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTAT : 3160108 140 : rpIleGlyAlaPheLeuThrAspPheArgHisGlyArgLeuLysPheArgAlaTrp : 157 ||!!: !:!! !:!!|||! |||||| ! !!..!||| .!!|||!.!||| rpMetLeuSerAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrp 3160109 : GGATGTTGTCGGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGG : 3160162 158 : IleProTyrAspTyrAsnSerProLeu<->LeuPheLeuPheSerPheIleHisGl : 175 :!!|||!:!||||||!..:!! !!||| :!!||| !.!!!!!!:! !:!!|| LeuProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGl 3160163 : TTACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCA : 3160219 176 : nIleLeuAlaThrIlePheSerThrAsnLeuAsnIleValCysAspCysLeuPheS : 194 |.!!:!!.!! !||||||! !|||!.! !! !!!:! ! !||| !||||||| nPheValThrLeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheS 3160220 : GTTTGTAACTCTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCA : 3160276 195 : erGlyIleLeuIleHisIleTyrCysGlnPheGluIleLeuGluHisArgMetLys : 212 |||||:!:|||||||||||||||||||||||||||||||||:!!||||||:!!||| erGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLys 3160277 : GCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAG : 3160330 213 : AsnIleThrThrAspLysAspTyrSerAlaLysPheCysAlaHisHisHisHisAr : 231 !:!|||! ! !!|||!:!!!:|||||||||||| |||||| !||||||:!!|| SerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrAr 3160331 : AGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCG : 3160387 232 : gIleTyr{Ly} >>>> Target Intron 2 >>>> {s}PheAlaSerMetV : 239 |||||||{||} 328 bp {|}||||||..!!!:: gIleTyr{Ly}++ ++{s}PheAlaGluIleI 3160388 : CATATAC{AA}gt.........................ag{A}TTCGCTGAAATTA : 3160739 240 : alAsnAspAsnPheLysMetIleMetSerMetGlnPheLeuIleSerThrGlyAla : 257 !!|||! !!.|||!..!!:! |||:!!! !|||||||||:!:!!!||| !.!! leAsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThr 3160740 : TAAACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACA : 3160793 258 : ValCysPheAsnLeuTyrArgLeuSerValMetGluPheGlyProLysPheMetGl : 276 :!!||||||||||||!:!||||||!!! !! :!! ! ! !!:!! !!:!:! MetCysPheAsnLeuPheArgLeuThrGlnThrLysValTyrSerGlnValLeuAl 3160794 : ATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGGTGTATTCGCAAGTTTTAGC : 3160850 277 : uThrAlaThrTyrThrLeuCysLeuLeuMetGlnValPheTyrTyrCysTrpTyrG : 295 ! ! ! !!!:!! !:!! !!:!!!!! |||:!!||||||! !|||||||||| aLeuIleProPheMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyrG 3160851 : ATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATG : 3160907 296 : lyAsnGluValLysLeuLys >>>> Target Intron 3 >>>> SerLeuG : 304 ||||||||..!|||:!!||| 74 bp ||||||| lyAsnGluThrLysValLys++ ++SerLeuG 3160908 : GAAACGAGACCAAAGTGAAGgt.........................agAGCCTTG : 3161008 305 : luIleProAsnAlaValLeuGluSerAsnLeuProPheLeuAsnAspSerSerLys : 322 ||||| !:!!.!!|||!!!|||||||||! ! !! |||!:!.!.|||!!!||| luIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSerThrLys 3161009 : AAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAGCACCAAA : 3161062 323 : LysIleLeuLeuLeuIleMetArgArgSerLeuGluProIleGluPheThrSerCy : 341 |||! !|||||| !|||||| !|||||||||:!!|||||||||||||||.!!.. LysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheThrGlyAl 3161063 : AAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCACCGGCGC : 3161119 342 : sHisValIleSerMetAsnLeuGluSerPheAlaIle >>>> Target Intro : 354 ! !|||.!! !!:!:||||||||||||||| !! ! 161 bp aPheValPheProValAsnLeuGluSerPheLysSer++ 3161120 : TTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAAAGTgt................. : 3161160 355 : n 4 >>>> LeuLeuLysThrSerTyrSerAlaTyrAsnLeuLeuGlnGlnSer : 368 |||:!!|||||||||||||||!.!!:!|||:!!:!!||||||!!! ++LeuValLysThrSerTyrSerValPheAsnValIleGlnGlnThr 3161161 : ........agTTGGTGAAAACTTCCTATTCGGTATTCAACGTAATCCAGCAAACG : 3161363 vulgar: gi|350424935|ref|XP_003493960.1| 0 368 . KQ414646.1 3159620 3161363 + 752 M 120 360 S 0 2 5 0 2 I 0 69 3 0 2 S 1 1 M 45 135 G 0 3 M 67 201 S 0 2 5 0 2 I 0 324 3 0 2 S 1 1 M 67 201 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3159621 3161363 752 + . gene_id 3 ; sequence gi|350424935|ref|XP_003493960.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3159621 3159982 . + . KQ414646.1 exonerate:protein2genome:local exon 3159621 3159982 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3159983 3159984 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3159983 3160055 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3160054 3160055 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3160056 3160397 . + . KQ414646.1 exonerate:protein2genome:local exon 3160056 3160397 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3160398 3160399 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3160398 3160725 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3160724 3160725 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3160726 3160927 . + . KQ414646.1 exonerate:protein2genome:local exon 3160726 3160927 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3160928 3160929 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3160928 3161001 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3161000 3161001 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3161002 3161157 . + . KQ414646.1 exonerate:protein2genome:local exon 3161002 3161157 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3161158 3161159 . + . intron_id 4 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3161158 3161318 . + . intron_id 4 KQ414646.1 exonerate:protein2genome:local splice3 3161317 3161318 . + . intron_id 3 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3161319 3161363 . + . KQ414646.1 exonerate:protein2genome:local exon 3161319 3161363 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3159621 3161363 752 + . alignment_id 3 ; Query gi|350424935|ref|XP_003493960.1| ; Align 3159621 1 360 ; Align 3160057 122 135 ; Align 3160195 167 201 ; Align 3160727 235 201 ; Align 3161002 302 156 ; Align 3161319 354 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350424935|ref|XP_003493960.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 633 Query range: 119 -> 369 Target range: 3157785 -> 3159014 120 : IleGluTrpAsnSerLysAlaTyrSerPheValLeuHisPhePheValAlaTrpLe : 138 .!!..!||||||!!!! !.!|||!!! :::||| ... ..! !!:::! PheArgTrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIl 3157786 : TTTAGATGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTAT : 3157840 139 : uTrpIleGlyAlaPheLeuThrAspPheArgHisGlyArgLeuLysPheArgAlaT : 157 !!:::!: !!:!!.!!|||! !||||||!!!:!! !!!:!|||! !|||||||||| eTyrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaT 3157841 : ATACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCAT : 3157897 158 : rpIleProTyrAspTyrAsnSerProLeuLeuPheLeuPheSerPheIleHisGln : 175 |||||||||||||||||::! !! !!! !:!!|||:!!.!!!!!! !:!!|||||| rpIleProTyrAspTyrSerProAlaProIlePheIleLeuThrSerValHisGln 3157898 : GGATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTCCGTCCATCAA : 3157951 176 : IleLeuAlaThrIlePheSerThrAsnLeuAsnIleValCysAspCysLeuPheSe : 194 !:!!|||:!!! .!.!!! !!.!! !!.!:!!..! ||| !|||!:!!! AlaIleAlaSerThrIleCysCysThrSerThrValThrValAspThrLeuTyrTh 3157952 : GCTATAGCCTCGACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTATACAC : 3158008 195 : rGlyIleLeuIleHisIleTyrCysGlnPheGluIleLeuGluHisArgMetLysA : 213 !|||:!:||||||:!!|||||||||||||||||||||||||||||||||:!:!:!| rGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgA 3158009 : TGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGA : 3158065 214 : snIleThrThrAspLysAspTyrSerAlaLysPheCysAlaHisHisHisHisArg : 231 ||:!!! !|||!!::!!||| !!|||!.!||| ||||||!!.|||||| !!||| snValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArg 3158066 : ACGTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGT : 3158119 232 : IleTyr{Ly} >>>> Target Intron 1 >>>> {s}PheAlaSerMetVa : 239 ||||||{:!} 325 bp {!}|||:!!!.!! !|| IleTyr{Gl}++ ++{n}PheSerLysLysVa 3158120 : ATATAC{CA}gt.........................ag{A}TTTTCGAAAAAGGT : 3158468 240 : lAsnAspAsnPheLysMetIleMetSerMetGlnPheLeuIleSerThrGlyAlaV : 258 ||||!!:.!.||||||:!!|||:!!! ! ||||||! !||||||! !..!!.!: lAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValI 3158469 : GAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGA : 3158525 259 : alCysPheAsnLeuTyrArgLeuSerValMetGluPheGlyProLysPheMetGlu : 276 !!||||||||||||||||||:!!!!! !!!::!!.!.! ||||||:::||| leCysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGlu 3158526 : TCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaa : 3158579 277 : ThrAlaThrTyrThrLeuCysLeuLeuMetGlnValPheTyrTyrCysTrpTyrGl : 295 ! !|||:!!!!!||| !:!!! !|||:!!|||||||||||||||||||| IleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGl 3158580 : atcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGTTGGTACGG : 3158636 296 : yAsnGluValLysLeuLys >>>> Target Intron 2 >>>> SerLeuGl : 304 ||||||||||||| !||| 80 bp ||||||:! yAsnGluValLysAspLys++ ++SerLeuGl 3158637 : CAACGAAGTGAAAGATAAGgt.........................agAGCCTCCA : 3158743 305 : uIleProAsnAlaValLeuGluSerAsnLeuProPheLeuAsnAspSerSerLysL : 323 !:!!||| !! !:!!!!!.!.|||:!!! ! !!! !||||||:!!!:! !! ! nLeuProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrA 3158744 : ACTTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCA : 3158800 324 : ysIleLeuLeuLeuIleMetArgArgSerLeuGluProIleGluPheThrSerCys : 341 :! !||||||:!!!!:|||||||||:!!:!!..!|||||||||||||||||| ! rgAlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheThrSerIle 3158801 : GAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATT : 3158854 342 : HisValIleSerMetAsnLeuGluSerPheAlaIle >>>> Target Intron : 354 ||||||:!!|||:!!||||||||||||||| ! ! 74 bp HisValValSerValAsnLeuGluSerPheMetAla++ 3158855 : CACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt.................. : 3158895 355 : 3 >>>> LeuLeuLysThrSerTyrSerAlaTyrAsnLeuLeuGlnGlnSerLy : 369 :!!:!!||||||:!!|||||||||!:!|||:!!:!!||||||||||| ++ValIleLysThrAlaTyrSerAlaPheAsnMetIleGlnGlnSerLy 3158896 : .......agGTAATAAAAACTGCGTACTCCGCGTTCAACATGATCCAACAAAGCAA : 3159012 370 : s : 369 | s 3159013 : A : 3159014 vulgar: gi|350424935|ref|XP_003493960.1| 119 369 . KQ414646.1 3157785 3159014 + 633 M 114 342 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 67 201 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157786 3159014 633 + . gene_id 4 ; sequence gi|350424935|ref|XP_003493960.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3157786 3158129 . + . KQ414646.1 exonerate:protein2genome:local exon 3157786 3158129 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158130 3158131 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158130 3158454 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3158453 3158454 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158455 3158656 . + . KQ414646.1 exonerate:protein2genome:local exon 3158455 3158656 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158657 3158658 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158657 3158736 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3158735 3158736 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158737 3158892 . + . KQ414646.1 exonerate:protein2genome:local exon 3158737 3158892 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158893 3158894 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158893 3158966 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3158965 3158966 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158967 3159014 . + . KQ414646.1 exonerate:protein2genome:local exon 3158967 3159014 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157786 3159014 633 + . alignment_id 4 ; Query gi|350424935|ref|XP_003493960.1| ; Align 3157786 120 342 ; Align 3158456 235 201 ; Align 3158737 302 156 ; Align 3158967 354 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350424935|ref|XP_003493960.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 469 Query range: 7 -> 301 Target range: 3179634 -> 3180667 8 : PheAlaLeuLeuThrLeuThrGlyLeuIleArgProSerThrTrpLysTyrLeuTr : 26 |||......|||::!:!! !|||! ! ||||||! !:!!|||...! !!: PheThrPheLeuSerIleGlyGlyCysTrpArgProIleSerTrpSerSerThrTy 3179635 : tttacatttctcaGTATCGGTGGCTGTTGGAGACCGATCTCGTGGTCTTCGACGTA : 3179689 27 : pLysArgValLeuTyrAspValTyrThrIleValValLeuLeuLeuLeuPheSerP : 45 :|||! !!.!:!!|||:!!|||||||||:!!:!!||||||:!!:!! ! !!!:!| rLysThrAlaIleTyrAsnValTyrThrValLeuValLeuIleMetGlyValAsnP 3179690 : CAAAACGGCAATCTACAATGTCTACACCGTTCTCGTATTAATCATGGGTGTTAATT : 3179746 46 : heGluThrSerLeuIleLeuAspLeuValIleAsnValAspAsnGlnAspAspPhe : 63 || !..!|||! ! !!!! ! !:!!.!!!.!:!!!!:!.! !.!.|||||| heMetValSerGln---PheGlySerMetPheThrIleGluThrValGlnAspPhe 3179747 : TCATGGTTTCGCAA---TTTGGCAGCATGTTCACCATAGAAACCGTACAAGATTTC : 3179797 64 : SerGluAsnLeuTyrValThrLeuValLeuPheSerSerCysCysLysAlaLeuVa : 82 !!!: ! !|||:!! !:!! !:!!||| !.!!||||||||| !! ! ValAspLeuThrTyrIleCysValSerValPheValGlyCysCysLysLeuSerAs 3179798 : GTCGACCTTACTTACATATGCGTCTCCGTGTTCGTCGGTTGTTGCAAGCTGTCAAA : 3179854 83 : lLeuLeuIleTyrArgGlyAsnIleGluIleLeuMetGlyValLeuLeuGluLysP : 101 !:!!:!!.!!|||||| !:!!||| ! !||||||..!:!!!!!:!!||| ! | nValValPheTyrArgLysAspIleIleAspLeuMetAsnIlePheMetGluAspP 3179855 : CGTGGTGTTCTATCGGAAAGATATCATAGACCTGATGAACATCTTCATGGAGGATC : 3179911 102 : roPheValProValAsnAspGluGluIleGluIleArgThrLysPheGluGluArg : 119 ||! !!.! ! !||| ! |||||| !:!!:!:!:!.!!!:!!:!!!:!!:!:! roCysAlaCysSerAsnLysGluGluAspGlnValGlnAlaArgTyrAspAspGln 3179912 : CTTGTGCATGTTCGAACAAGGAGGAGGACCAGGTGCAAGCGAGATACGACGATCAA : 3179965 120 : Ile{Gl} >>>> Target Intron 1 >>>> {u}TrpAsnSerLysAlaTy : 127 :!!{..} 77 bp {!} |||:!! !|| Leu{Ar}++ ++{g}LysAsnAlaValArgTy 3179966 : TTA{CG}gt.........................ag{G}AAAAACGCTGTCAGATA : 3180066 128 : rSerPheValLeuHisPhePheValAlaTrpLeuTrpIleGlyAlaPheLeuThrA : 146 |!!!.!.|||:!!.!..!.! ||||||! ! ! :!!..!:!!!!.:!!|||: rThrMetValValGluMetSerValAlaSerThrIleLeuAsnSerLeuValThrA 3180067 : CACAATGGTAGTCGAGATGTCGGTCGCCTCGACTATTTTAAACTCGTTAGTGACCA : 3180123 147 : spPheArgHisGlyArgLeuLysPheArgAlaTrpIleProTyrAspTyrAsnSer : 164 !!|||!:!||||||||||||! !:!|||!.!|||.!!||||||||||||!..!!! snPheGlnHisGlyArgLeuThrTyrArgGlyTrpPheProTyrAspTyrThrThr 3180124 : ACTTTCAACACGGCAGACTAACCTACAGAGGCTGGTTCCCTTACGATTACACGACC : 3180177 165 : ProLeuLeuPheLeuPheSerPheIleHisGlnIleLeuAlaThrIlePheSerTh : 183 !!:!!||||||! !!!.!!!!:! !! |||:!!|||..!..!:!! ! ! !:! AlaValLeuPheProLeuThrTyrAlaLeuGlnLeuLeuCysValLeuValTyrSe 3180178 : GCCGTACTTTTTCCATTGACATACGCTCTGCAGCTATTATGCGTGCTCGTATATTC : 3180234 184 : rAsnLeuAsnIleValCysAspCysLeuPheSerGlyIleLeuIleHisIleTyrC : 202 ! :!!:!!:!! ! ||| !||||||! !|||:!:|||!!:!!.:!:! !| rTrpIleHisValSerValAspIleLeuPhePheGlyLeuLeuMetGlnLeuCysC 3180235 : CTGGATCCACGTTTCAGTGGATATTCTCTTCTTCGGACTGTTGATGCAACTGTGCT : 3180291 203 : ysGlnPheGluIleLeuGluHisArgMetLysAsnIleThrThrAspLysAspTyr : 220 ||||||||!!:|||||| |||...!..!:!||||||:!!!!:!!. ! ! ysGlnPheAspIleLeuPheSerArgPheSerSerIleThrSerGluAsnLysGly 3180292 : GTCAATTCGAcattctcttctctcgtttcAGTAGCATAACGTCGGAGAACAAGGGT : 3180345 221 : SerAlaLysPheCysAlaHisHisHisHisArgIleTyr{Ly} >>>> Target : 234 ! !::! ||| !!.!|||||| !!|||||||||{::} 7 ValLeuArgArgCysIleArgHisHisAspArgIleTyr{Ar}++ 3180346 : GTTTTACGAAGATGCATTCGTCATCACGACAGAATTTAC{CG}gt........... : 3180391 235 : Intron 2 >>>> {s}PheAlaSerMetValAsnAspAsnPheLysMetIleM : 247 4 bp {:}!!.|||..!!!::!!||||||!:!.!.:!!:!!! | ++{g}LeuAlaGluIleMetAsnAspSerLeuGlnLeuThrM 3180392 : ..............ag{T}TTAGCTGAAATAATGAACGACAGTCTACAGCTGACGA : 3180500 248 : etSerMetGlnPheLeuIleSerThrGlyAlaValCysPheAsnLeuTyrArgLeu : 265 ||! ! ||||||!!! !||| ! !!.!:!!|||.!.!:!||| !!:!||| etPheAlaGlnPhePheGlySerPheMetValIleCysLeuSerLeuIleGlnLeu 3180501 : TGTTCGCCCAGTTTTTCGGAAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTG : 3180554 266 : SerValMetGlu<->PheGlyProLysPheMetGluThrAlaThrTyrThrLeuCy : 283 ! ! ! !!: .!!.!! !!:!!|||:!:! !||| ||| LeuAsnAlaAspIleLeuSerThrGluPheLeuAlaThrIlePheTyrLeuSerSe 3180555 : TTAAACGCAGATATTCTCAGCACCGAATTCTTAGCGACGAtattttatctgagctc : 3180611 284 : sLeuLeuMetGlnValPheTyrTyrCysTrpTyrGlyAsnGluValLysLeuLys : 301 ::!|||:!!||| !||| !||||||||||||||||||||||||!:! !||| rIleLeuLeuGlnSerPheLeuTyrCysTrpTyrGlyAsnGluValArgThrLys 3180612 : gatACTGCTGCAGAGCTTTCTTTACTGTTGGTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: gi|350424935|ref|XP_003493960.1| 7 301 . KQ414646.1 3179634 3180667 + 469 M 42 126 G 1 0 M 70 210 S 0 2 5 0 2 I 0 73 3 0 2 S 1 1 M 112 336 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 35 105 G 0 3 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3179635 3180667 469 + . gene_id 5 ; sequence gi|350424935|ref|XP_003493960.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3179635 3179972 . + . KQ414646.1 exonerate:protein2genome:local exon 3179635 3179972 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3179973 3179974 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3179973 3180049 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3180048 3180049 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3180050 3180388 . + . KQ414646.1 exonerate:protein2genome:local exon 3180050 3180388 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3180389 3180390 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3180389 3180462 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3180461 3180462 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3180463 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180463 3180667 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3179635 3180667 469 + . alignment_id 5 ; Query gi|350424935|ref|XP_003493960.1| ; Align 3179635 8 126 ; Align 3179761 51 210 ; Align 3180051 122 336 ; Align 3180464 235 105 ; Align 3180572 270 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350424935|ref|XP_003493960.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 317 Query range: 126 -> 303 Target range: 3150050 -> 3150814 127 : TyrSerPheValLeuHisPhePheValAlaTrpLeuTrpIleGlyAlaPheLeuTh : 145 |||!!!.!!:!!:!!.!..!! ||| !!! :!! :!!..!:!!!!.||| TyrThrIleLeuValGluLeuThrValLeuCysMetIleLeuSerSerLeuLeuGl 3150051 : TACACGATTCTGGTGGAACTCACGGTCCTCTGTATGATCCTCTCTTCGTTGCTCGG : 3150105 146 : rAspPheArgHisGlyArgLeuLysPheArgAlaTrpIleProTyrAspTyrAsnS : 164 !||||||!.!.!. !!..!||| !!:!|||||||||:!:|||!:!||||||::! yAspPheAsnGluArgGluLeuAlaTyrArgAlaTrpLeuProPheAspTyrSerL 3150106 : CGACTTTAACGAGCGGGAACTGGCGTACAGAGCCTGGCTGCCCTTCGATTACTCTC : 3150162 165 : erProLeuLeuPheLeuPheSerPheIleHisGlnIleLeuAlaThrIlePheSer : 182 !||| !! !!:!! !.!!:!!!:!:!!|||||||||:!!||| !||| !!!! euProThrTyrTyrTyrIleAlaTyrValHisGlnIleValAlaLeuIleGlyThr 3150163 : TGCCAACTTACTATTACATCGCGTACGTTCATCAGATCGTCGCGCTGATCGGTACG : 3150216 183 : ThrAsnLeuAsnIleValCysAspCysLeuPheSerGlyIleLeuIleHisIleTy : 201 :!! !! !|||:!!!.!|||||| :!!.!!!!!|||:!:|||:!!||| !! SerLeuSerAsnValAlaCysAspValIleIleCysGlyLeuLeuValHisAlaCy 3150217 : TCGCTTTCGAACGTCGCCTGCGACGTGATCATCTGCGGGTTGCTCGTTCACGCTTG : 3150273 202 : rCysGlnPheGluIleLeuGluHisArgMetLysAsnIleThrThrAspLysAspT : 220 ! !!||| |||||||||:!!||||||||||||.!.!!:||| !!!::!! sGlyGlnGlnGluIleLeuLysHisArgMetLysGluMetThrGlnGluGlnArgP 3150274 : CGGCCAACAGGAGATTCTCAAGCACAGAATGAAGGAGATGACGCAGGAACAGAGGC : 3150330 221 : yrSerAlaLysPheCysAlaHisHisHisHisArgIleTyr{Ly} >>>> Targ : 234 !:! ! ! !!.!!.! !||| !! !:!!|||{ } roAsnIleGlyLysIleValArgPheHisAspTyrLeuTyr{Gl}++ 3150331 : CGAATATCGGGAAAATCGTTCGTTTCCACGATTATCTTTAC{GG}gt......... : 3150376 235 : et Intron 1 >>>> {s}PheAlaSerMetValAsnAspAsnPheLysMetIl : 246 230 bp {!}!:!!.!! !! !:!!.!.!!:!!.|||!:! !|| ++{y}TyrValPheThrMetGlnGluLysPheArgTrpIl 3150377 : ................ag{G}TACGTTTTCACGATGCAAGAGAAGTTCAGATGGAT : 3150638 247 : eMetSerMetGlnPheLeuIleSerThrGlyAlaValCysPheAsnLeuTyrArgL : 265 |!!:.!!:!!|||.!!||| |||||| !!.!|||||||||! !||||||..!| eIleGlyValGlnLeuLeuSerSerThrLeuValValCysPheIleLeuTyrGluL 3150639 : AATAGGCGTGCAGCTTTTATCGAGCACGCTGGTAGTGTGTTTCATCCTGTACGAAT : 3150695 266 : eu<->SerValMetGluPheGlyProLysPheMetGluThrAlaThrTyrThrLeu : 282 || !:!..! !.!!.!! !!|||!:!:!!:!! !!.! !||| ! ! euAlaAsnThrProProIleSerSerLysTyrLeuGlnPheValLeuTyrLeuAla 3150696 : TGGCGAACACGCCTCCAATCAGCTCCAAGTACCTGCAATTTGTCCTGTACCTGGCC : 3150749 283 : CysLeuLeuMetGlnValPheTyrTyrCysTrpTyrGlyAsnGluValLysLeuLy : 301 |||:!!:!!! !|||:!!|||!:!|||||||||||||||.!.:!!:!!|||||||| CysMetMetThrGlnIlePhePheTyrCysTrpTyrGlyGluGlnLeuLysLeuLy 3150750 : TGTATGATGACGCAGATCTTCTTTTACTGCTGGTACGGCGAGCAGTTGAAACTGAA : 3150806 302 : sSerLeu : 303 | !||| sValLeu 3150807 : GGTACTG : 3150814 vulgar: gi|350424935|ref|XP_003493960.1| 126 303 . KQ414646.1 3150050 3150814 + 317 M 107 321 S 0 2 5 0 2 I 0 226 3 0 2 S 1 1 M 31 93 G 0 3 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150051 3150814 317 + . gene_id 6 ; sequence gi|350424935|ref|XP_003493960.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3150051 3150373 . + . KQ414646.1 exonerate:protein2genome:local exon 3150051 3150373 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150374 3150375 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150374 3150603 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150602 3150603 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150604 3150814 . + . KQ414646.1 exonerate:protein2genome:local exon 3150604 3150814 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150051 3150814 317 + . alignment_id 6 ; Query gi|350424935|ref|XP_003493960.1| ; Align 3150051 127 321 ; Align 3150605 235 93 ; Align 3150701 266 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350424935|ref|XP_003493960.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 251 Query range: 0 -> 121 Target range: 3157321 -> 3157684 1 : MetHisThrLeuArgTrpThrPheAlaLeuLeuThrLeuThrGlyLeuIleArgPr : 19 ||| !..!|||!:!! |||! !||||||! !:!!:!!|||! ! !! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 3157322 : ATGAGCGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTATCTGCC : 3157376 20 : oSerThrTrpLysTyrLeuTrpLysArgValLeuTyrAspValTyrThrIleValV : 38 | !:!!|||! ! ! !!:::!!||| !||||||:!!:!!||| !::: oHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheS 3157377 : CCATTCGTGGACAACACCGTTCGAAAGGTCTTTGTACAATATCTACGGGGtgttct : 3157433 39 : alLeuLeuLeuLeuPheSerPheGluThrSerLeuIleLeuAspLeuValIleAsn : 56 ...||||||||| !|||.!!! !|||! !|||||||||:!!!.!|||||| erPheLeuLeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIleAsn 3157434 : cctttcttcttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCAAC : 3157487 57 : ValAspAsnGlnAspAspPheSerGluAsnLeuTyrValThrLeuValLeuPheSe : 75 |||!!:!:!|||||||||||||||:::|||... |||||| !|||:!!||| ValGluSerGlnAspAspPheSerAspAsnPheSerValThrAlaValValPheLe 3157488 : GTGGAGAGCCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTTCT : 3157544 76 : rSerCysCysLysAlaLeuValLeuLeuIleTyrArgGlyAsnIleGluIleLeuM : 94 !!!!!! ! !||| !! !:!!||||||||| |||||||||.!! !.!!|||! uThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuI 3157545 : CACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGA : 3157601 95 : etGlyValLeuLeuGluLysProPheValProValAsnAspGluGluIleGluIle : 112 !:! !..!|||! !.!.||||||||| !||||||:!! ||||||! !|||||| leAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIle 3157602 : TCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATT : 3157655 113 : ArgThrLysPheGluGluArgIleGlu : 121 |||.!!|||||||||:!!! !! !||| ArgAlaLysPheGluLysIleThrGlu 3157656 : AGAGCGAAATTCGAGAAGATCACCGAG : 3157684 vulgar: gi|350424935|ref|XP_003493960.1| 0 121 . KQ414646.1 3157321 3157684 + 251 M 121 363 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157322 3157684 251 + . gene_id 7 ; sequence gi|350424935|ref|XP_003493960.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3157322 3157684 . + . KQ414646.1 exonerate:protein2genome:local exon 3157322 3157684 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157322 3157684 251 + . alignment_id 7 ; Query gi|350424935|ref|XP_003493960.1| ; Align 3157322 1 363 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350424935|ref|XP_003493960.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 242 Query range: 137 -> 235 Target range: 3174314 -> 3174612 138 : LeuTrpIleGlyAlaPheLeuThrAspPheArgHisGlyArgLeuLysPheArgAl : 156 :::|||.!!..!:!!.!!!!!|||! !|||!:! ! !!..!||| .!!|||!. IleTrpPheSerSerIlePheThrAlaPheLysIleArgGluLeuProLeuArgGl 3174315 : atatggTTCTCGTCGATCTTCACGGCTTTTAAGATCAGAGAGTTACCCCTTCGAGG : 3174369 157 : aTrpIle-ProTyrAspTyrAsnSerProLeu<->LeuPheLeuPheSerPheIle : 173 !|||:!!#|||!:!||||||!..:!! !!||| :!!||| !.!!!!!!:! ! yTrpLeu#ProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAla 3174370 : ATGGTTAACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCT : 3174424 174 : HisGlnIleLeuAlaThrIlePheSerThrAsnLeuAsnIleValCysAspCysLe : 192 :!!|||.!!:!!.!! !|||||| !|||::! !! !|||! !! !||| !|| TyrGlnPheValThrLeuIlePheLeuThrSerAlaIleIleGlySerAspAsnLe 3174425 : TATCAGTTTGTAACTCTGATATTCCTTACTTCTGCTATTATCGGTTCTGACAATCT : 3174481 193 : uPheSerGlyIleLeuIleHisIleTyrCysGlnPheGluIleLeuGluHisArgM : 211 ||||||||||:!:|||||||||||||||||||||||||||||||||:!!||||||: uPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgL 3174482 : ATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTC : 3174538 212 : etLysAsnIleThrThrAspLysAspTyrSerAlaLysPheCysAlaHisHisHis : 229 !!|||!:!|||! ! !!|||!:!!!:|||||||||||| |||||| !|||||| euLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHis 3174539 : TGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCAT : 3174592 230 : HisArgIleTyrLysPhe : 235 :!!||||||||||||||| TyrArgIleTyrLysPhe 3174593 : TATCGCATATACAAGTTT : 3174612 vulgar: gi|350424935|ref|XP_003493960.1| 137 235 . KQ414646.1 3174314 3174612 + 242 M 21 63 F 0 1 M 8 24 G 0 3 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174315 3174612 242 + . gene_id 8 ; sequence gi|350424935|ref|XP_003493960.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174315 3174612 . + . KQ414646.1 exonerate:protein2genome:local exon 3174315 3174612 . + . insertions 3 ; deletions 0 ; frameshifts 1 KQ414646.1 exonerate:protein2genome:local similarity 3174315 3174612 242 + . alignment_id 8 ; Query gi|350424935|ref|XP_003493960.1| ; Align 3174315 138 63 ; Align 3174379 159 24 ; Align 3174406 167 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350424935|ref|XP_003493960.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 239 Query range: 232 -> 351 Target range: 3174931 -> 3175362 233 : TyrLysPheAlaSerMetValAsnAspAsnPheLysMetIleMetSerMetGlnPh : 251 !:!!:!||||||..!!!::!!|||! !!.|||!..!!:! |||:!!! !||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3174932 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3174986 252 : eLeuIleSerThrGlyAlaValCysPheAsnLeuTyrArgLeuSerValMetGluP : 270 ||||:!:!!!||| !.!!:!!||||||||||||!:!||||||!!! !! :!! eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3174987 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3175043 271 : heGlyProLysPheMetGluThrAlaThrTyrThrLeuCysLeuLeuMetGlnVal : 288 ! ! !!:!! !!:!:! ! ! ! !!!:!! !:!! !!:!!!!! |||:!! alTyrSerGlnValLeuAlaLeuIleProPheMetValSerValPheAlaGlnIle 3175044 : TGTATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATA : 3175097 289 : PheTyrTyrCysTrpTyrGlyAsnGluValLysLeuLys{Se} >>>> Target : 302 ||||||! !||||||||||||||||||..!|||:!!|||{ } 7 PheTyrCysCysTrpTyrGlyAsnGluThrLysValLys{Va}-- 3175098 : TTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG{GT}ac........... : 3175143 303 : Intron 1 >>>> {r}LeuGluIleProAsnAlaValLeuGluSerAsnLeuP : 315 4 bp {!}||||||||| !:!!.!!|||!!!|||||||||! ! ++{l}LeuGluIleCysAspThrValPheGluSerAsnTrpT 3175144 : ..............ag{C}CTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGA : 3175252 316 : roPheLeuAsnAspSerSerLysLysIleLeuLeuLeuIleMetArgArgSerLeu : 333 !! |||!:!.!.|||!!!||||||! !|||||| !|||||| !||||||||| hrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgSerLeu 3175253 : CGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTG : 3175306 334 : GluProIleGluPheThrSerCysHisValIleSerMetAsnLeuGluSerPhe : 351 :!!|||||||||||||||.!!..! !|||.!! !!:!:||||||||||||||| LysProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSerPhe 3175307 : AAGCCAATAGAATTCACCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTT : 3175362 vulgar: gi|350424935|ref|XP_003493960.1| 232 351 . KQ414646.1 3174931 3175362 + 239 M 69 207 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174932 3175362 239 + . gene_id 9 ; sequence gi|350424935|ref|XP_003493960.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3174932 3175140 . + . KQ414646.1 exonerate:protein2genome:local exon 3174932 3175140 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3175141 3175142 . + . intron_id 1 ; splice_site "AC" KQ414646.1 exonerate:protein2genome:local intron 3175141 3175214 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3175213 3175214 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3175215 3175362 . + . KQ414646.1 exonerate:protein2genome:local exon 3175215 3175362 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3174932 3175362 239 + . alignment_id 9 ; Query gi|350424935|ref|XP_003493960.1| ; Align 3174932 233 207 ; Align 3175216 303 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350424935|ref|XP_003493960.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 189 Query range: 229 -> 301 Target range: 3155793 -> 3156012 230 : HisArgIleTyrLysPheAlaSerMetValAsnAspAsnPheLysMetIleMetSe : 248 ||| !! !! !!:!|||.!!:!!|||:!!|||!!:.!.|||:!!||| !!:! HisAspAsnCysArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePh 3155794 : cACGATAATTGCAGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTT : 3155848 249 : rMetGlnPheLeuIleSerThrGlyAlaValCysPheAsnLeuTyrArgLeuSerV : 267 !! |||||| !:!:|||||| !|||:!!|||||||||||||||! !|||!!!! eThrGlnPheAlaValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrG 3155849 : CACTCAATTCGCGGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAG : 3155905 268 : alMetGluPheGlyPro<->LysPheMetGluThrAlaThrTyrThrLeuCysLeu : 284 ! !!: ! !||| !:!!:!:!!|||! ! !! !|||!:! !|||:!! lySerAspValThrProIleArgTyrValGluIleIleMetTyrSerSerCysMet 3155906 : GATCAGATGTGACGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATG : 3155959 285 : LeuMetGlnValPheTyrTyrCysTrpTyrGlyAsnGluValLysLeuLys : 301 |||! !|||:!!||| !||||||||||||||||||||||||||||||||| LeuThrGlnIlePheIleTyrCysTrpTyrGlyAsnGluValLysLeuLys 3155960 : CTCACGCAAATATTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAG : 3156012 vulgar: gi|350424935|ref|XP_003493960.1| 229 301 . KQ414646.1 3155793 3156012 + 189 M 43 129 G 0 3 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155794 3156012 189 + . gene_id 10 ; sequence gi|350424935|ref|XP_003493960.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155794 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155794 3156012 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155794 3156012 189 + . alignment_id 10 ; Query gi|350424935|ref|XP_003493960.1| ; Align 3155794 230 129 ; Align 3155926 273 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350424935|ref|XP_003493960.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 185 Query range: 0 -> 118 Target range: 3154921 -> 3155275 1 : MetHisThrLeuArgTrpThrPheAlaLeuLeuThrLeuThrGlyLeuIleArgPr : 19 |||||| !|||!:! !.!. !!!!! !.!!:!! !|||||| ! !|| MetHisLeuLeuGlnLysGlnLeuGlnPheCysAlaMetCysGlyLeuTrpProPr 3154922 : ATGCATCTACTGCAAAAACAACTGCAATTTTGCGCAATGTGCGGTCTCTGGCCACC : 3154976 20 : oSerThrTrpLysTyrLeuTrpLysArgValLeuTyrAspValTyrThrIleValV : 38 | !!:!!! |||!::|||||| !! !|||..!|||!:!:!! !. oProSerSerAlaProLeuPheLysArgPheAlaTyrSerValPheSerTrpTyrT 3154977 : GCCATCATCAGCTCCGCTGTTTAAAAGATTCGCCTACTCTGTATTCTCGTGGTACA : 3155033 39 : alLeuLeuLeuLeuPheSerPheGluThrSerLeuIleLeuAspLeuValIleAsn : 56 .!|||:!!|||:!!!:!! ! ! !|||! !|||:!!||||||:!!:!:||| hrLeuIleLeuValTyrIleThrValPheSerGlnIleMetAspLeuIleValAsn 3155034 : CGTTAATACTGGTGTACATCACGGTTTTCAGCCAAATCATGGACCTAATCGTGAAC : 3155087 57 : ValAspAsnGlnAspAspPheSerGluAsnLeuTyrValThrLeuValLeuPheSe : 75 ||| !.!||||||!!:||||||!!:|||!!!|||:!! !|||!.!! ! ! ValThrThrGlnAspGluPheSerAspAsnPheTyrIleLeuLeuAlaCysAlaIl 3155088 : GTGACGACTCAAGACGAGTTTAGCGACAATTTTTACATACTTCTGGCGTGTGCGAT : 3155144 76 : rSerCysCysLysAlaLeuValLeuLeuIleTyrArgGlyAsnIleGluIleLeuM : 94 !|||! ||||||! ! !:!!|||! ! !||| !|||:!!.!. !:!!! eSerLeuGlnLysAlaGlnSerValLeuAsnSerArgLysAsnValHisArgMetI 3155145 : ATCCTTGCAGAAAGCACAGAGTGTGTTAAACAGTCGTAAGAATGTCCACCGTATGA : 3155201 95 : etGlyValLeuLeuGluLysProPheValProValAsnAspGluGluIleGluIle : 112 !:! !:!!||| !...:!!|||||| !|||! ! ! ! ||||||||||||||| leAspLeuLeuAsnSerGluProPheHisProGluCysLysGluGluIleGluIle 3155202 : TCGATCTTTTGAACAGCGAACCTTTTCATCCAGAATGTAAGGAGGAAATCGAGATA : 3155255 113 : ArgThrLysPheGluGlu : 118 |||!:!!:!.!!...||| ArgSerArgIleSerGlu 3155256 : AGAAGTAGGATCTCCGAG : 3155275 vulgar: gi|350424935|ref|XP_003493960.1| 0 118 . KQ414646.1 3154921 3155275 + 185 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3154922 3155275 185 + . gene_id 11 ; sequence gi|350424935|ref|XP_003493960.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3154922 3155275 . + . KQ414646.1 exonerate:protein2genome:local exon 3154922 3155275 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3154922 3155275 185 + . alignment_id 11 ; Query gi|350424935|ref|XP_003493960.1| ; Align 3154922 1 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350424935|ref|XP_003493960.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 231 -> 301 Target range: 3178378 -> 3178591 232 : IleTyrLysPheAlaSerMetValAsnAspAsnPheLysMetIleMetSerMetGl : 250 ||| :::|||.!!..!! !|||||| ! |||:!! !!:!!:! !:!!|| IleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLeuGl 3178379 : atttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCTGCA : 3178433 251 : nPheLeuIleSerThrGlyAlaValCysPheAsnLeuTyrArgLeuSerValMetG : 269 ||||! !||||||:!! !!.!:!!|||!!.!:!:!!|||!:!:!!|||..!!!:. nPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrIleA 3178434 : ATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGATTA : 3178490 270 : lu<->PheGlyProLysPheMetGluThrAlaThrTyrThrLeuCysLeuLeuMet : 286 !. |||.!! !!!.|||:!: ! !|||:!!||| !! !|||:!!|||! ! snProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeuThr 3178491 : ATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACG : 3178544 287 : GlnValPheTyrTyrCysTrpTyrGlyAsnGluValLysLeuLys : 301 ||||||!:!! |||||||||!:!||||||||||||! !|||||| GlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys 3178545 : CAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: gi|350424935|ref|XP_003493960.1| 231 301 . KQ414646.1 3178378 3178591 + 151 M 38 114 G 0 3 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178379 3178591 151 + . gene_id 12 ; sequence gi|350424935|ref|XP_003493960.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178379 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178379 3178591 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178379 3178591 151 + . alignment_id 12 ; Query gi|350424935|ref|XP_003493960.1| ; Align 3178379 232 114 ; Align 3178496 270 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350424935|ref|XP_003493960.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 0 -> 115 Target range: 3177231 -> 3177576 1 : MetHisThrLeuArgTrpThrPheAlaLeuLeuThrLeuThrGlyLeuIleArgPr : 19 ||||||! !|||! !! ! !!|||||||||||||||! ! !|||! ! !:!|| MetHisArgLeuProLeuProPheAlaLeuLeuThrCysCysGlyTyrTrpLysPr 3177232 : ATGCATAGGCTTCCTTTGCCTTTCGCTCTGCTTACTTGCTGCGGCTACTGGAAACC : 3177286 20 : oSerThrTrp<->LysTyrLeuTrpLysArgValLeuTyrAspValTyrThrIleV : 37 |!!!! !||| !! ! !||| ! !|||||||||||||||:!!:!: oThrLysTrpProAlaSerSerLeuLysTyrTrpLeuTyrAspValTyrSerValP 3177287 : GACAAAATGGCCAGCTAGTTCGCTGAAATACTGGCTGTACGACGTTTACTCGGTGT : 3177343 38 : alValLeuLeuLeuLeuPheSerPheGluThrSerLeuIleLeuAspLeuValIle : 55 !!:!!:!!!!!||||||::: ||| ! ! !:!!|||! !:!!||| heMetValPheLeuLeuTyrPhePheThrPheCysAlaCysIleAspSerLeuIle 3177344 : TTATGGTCTTTTTGCTctattttttcacgttttgCGCATGCATAGACTCGTTGATC : 3177397 56 : AsnValAspAsnGlnAspAspPheSerGluAsnLeuTyrValThrLeuValLeuPh : 74 !:! !||| !:!! .!.!!!!!:!!.!!!! !:!! !:!! !:!!|| SerLysAspLeuLys---ThrMetThrAspLysPheSerLeuPheIleSerValPh 3177398 : AGCAAAGATCTCAAG---ACGATGACAGATAAGTTTTCTCTGTTCATCTCTGTGTT : 3177451 75 : eSerSerCysCysLysAlaLeuValLeuLeuIleTyrArgGlyAsnIleGluIleL : 93 |.!! !! ! |||!.! ! !|||!!!:!! ! ||||||!..||| !! !: eGlyValSerLeuLysValAlaAsnLeuPheLeuGlnArgGlyArgIleIleAsnV 3177452 : CGGTGTCTCTCTGAAAGTAGCCAATTTATTCCTTCAACGGGGGAGGATTATAAACG : 3177508 94 : euMetGlyValLeuLeuGluLysProPheValProValAsnAspGluGluIleGlu : 111 !!|||..!:!!|||||| !:!! !! !:!!||| !:!!!!::!!|||! ! alMetAsnIleLeuLeuThrGluAsnCysIleProArgAspGluGlnGluLysIle 3177509 : TGATGAACATTTTGCTGACGGAGAATTGCATCCCGAGGGACGAGCAAGAAAAGATA : 3177562 112 : IleArgThrLys : 115 |||!:! !||| IleGlnArgLys 3177563 : ATACAACGGAAG : 3177576 vulgar: gi|350424935|ref|XP_003493960.1| 0 115 . KQ414646.1 3177231 3177576 + 117 M 22 66 G 0 3 M 38 114 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3177232 3177576 117 + . gene_id 13 ; sequence gi|350424935|ref|XP_003493960.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3177232 3177576 . + . KQ414646.1 exonerate:protein2genome:local exon 3177232 3177576 . + . insertions 3 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3177232 3177576 117 + . alignment_id 13 ; Query gi|350424935|ref|XP_003493960.1| ; Align 3177232 1 66 ; Align 3177301 23 114 ; Align 3177415 62 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350424935|ref|XP_003493960.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 884 Query range: 0 -> 369 Target range: 1947382 -> 1945689 1 : MetHisThrLeuArgTrpThrPheAlaLeuLeuThrLeuThrGlyLeuIleArgPr : 19 ||| !..!|||!:!! |||! !||||||! !:!!:!!|||! ! !! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 1947382 : ATGAGCGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTATCTGCC : 1947328 20 : oSerThrTrpLysTyrLeuTrpLysArgValLeuTyrAspValTyrThrIleValV : 38 | !:!!|||! ! ! !!:::!!||| !||||||:!!:!!||| !::: oHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheS 1947327 : CCATTCGTGGACAACACCGTTCGAAAGGTCTTTGTACAATATCTACGGGGtgttct : 1947271 39 : alLeuLeuLeuLeuPheSerPheGluThrSerLeuIleLeuAspLeuValIleAsn : 56 ...||||||||| !|||.!!! !|||! !|||||||||:!!!.!|||||| erPheLeuLeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIleAsn 1947270 : cctttcttcttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCAAC : 1947217 57 : ValAspAsnGlnAspAspPheSerGluAsnLeuTyrValThrLeuValLeuPheSe : 75 |||!!:!:!|||||||||||||||:::|||... |||||| !|||:!!||| ValGluSerGlnAspAspPheSerAspAsnPheSerValThrAlaValValPheLe 1947216 : GTGGAGAGCCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTTCT : 1947160 76 : rSerCysCysLysAlaLeuValLeuLeuIleTyrArgGlyAsnIleGluIleLeuM : 94 !!!!!! ! !||| !! !:!!||||||||| |||||||||.!! !.!!|||! uThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuI 1947159 : CACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGA : 1947103 95 : etGlyValLeuLeuGluLysProPheValProValAsnAspGluGluIleGluIle : 112 !:! !..!|||! !.!.||||||||| !||||||:!! ||||||! !|||||| leAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIle 1947102 : TCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATT : 1947049 113 : ArgThrLysPheGluGluArgIle{Gl} >>>> Target Intron 1 >>>> : 121 |||.!!|||||||||:!!! !! !{||} 107 bp ArgAlaLysPheGluLysIleThr{Gl}++ + 1947048 : AGAGCGAAATTCGAGAAGATCACC{GA}gt.........................a : 1946915 122 : {u}TrpAsnSerLysAlaTyrSerPheValLeuHisPhePheValAlaTrpLeuT : 139 {|}||||||!!!! !.!|||!!! :::||| ... ..! !!:::!!! +{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleT 1946914 : g{A}TGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATAT : 1946861 140 : rpIleGlyAlaPheLeuThrAspPheArgHisGlyArgLeuLysPheArgAlaTrp : 157 :::!: !!:!!.!!|||! !||||||!!!:!! !!!:!|||! !|||||||||||| yrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrp 1946860 : ACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGG : 1946807 158 : IleProTyrAspTyrAsnSerProLeuLeuPheLeuPheSerPheIleHisGlnIl : 176 |||||||||||||||::! !! !!! !:!!|||:!!.!!!!!|||:!!|||||| IleProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAl 1946806 : ATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGC : 1946750 177 : eLeuAlaThrIlePheSerThrAsnLeuAsnIleValCysAspCysLeuPheSerG : 195 !:!!|||.!!! .!.!!! !!.!! !!:!:!!..! |||! !|||!:!!!!| aIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrG 1946749 : TATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTG : 1946693 196 : lyIleLeuIleHisIleTyrCysGlnPheGluIleLeuGluHisArgMetLysAsn : 213 ||:!:||||||:!!|||||||||||||||||||||||||||||||||:!:!:!||| lyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsn 1946692 : GCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAAC : 1946639 214 : IleThrThrAspLysAspTyrSerAlaLysPheCysAlaHisHisHisHisArgIl : 232 :!!! !|||!!::!!||| !!|||!.!||| ||||||!!.|||||| !!||||| ValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIl 1946638 : GTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTAT : 1946582 233 : eTyr{Ly} >>>> Target Intron 2 >>>> {s}PheAlaSerMetValA : 240 ||||{:!} 325 bp {!}|||:!!!.!! !|||| eTyr{Gl}++ ++{n}PheSerLysLysValA 1946581 : ATAC{CA}gt.........................ag{A}TTTTCGAAAAAGGTGA : 1946233 241 : snAspAsnPheLysMetIleMetSerMetGlnPheLeuIleSerThrGlyAlaVal : 258 ||!!:.!.||||||:!!|||:!!! ! ||||||! !||||||! !..!!.!:!! snGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIle 1946232 : ACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATC : 1946179 259 : CysPheAsnLeuTyrArgLeuSerValMetGluPheGlyProLysPheMetGluTh : 277 ||||||||||||||||||:!!!!! !!!::!!.!.! ||||||:::||| CysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIl 1946178 : TGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaat : 1946122 278 : rAlaThrTyrThrLeuCysLeuLeuMetGlnValPheTyrTyrCysTrpTyrGlyA : 296 ! !|||:!!!!!||| !:!!! !|||:!!|||||||||||||||||||||| eIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyA 1946121 : caTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGGCA : 1946065 297 : snGluValLysLeuLys >>>> Target Intron 3 >>>> SerLeuGluI : 305 ||||||||||| !||| 80 bp ||||||:!!: snGluValLysAspLys++ ++SerLeuGlnL 1946064 : ACGAAGTGAAAGATAAGgt.........................agAGCCTCCAAC : 1945958 306 : leProAsnAlaValLeuGluSerAsnLeuProPheLeuAsnAspSerSerLysLys : 323 !!||| !! !:!!!!!.!.|||:!!! ! !!! !||||||:!!!:! !! !:! euProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArg 1945957 : TTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGA : 1945904 324 : IleLeuLeuLeuIleMetArgArgSerLeuGluProIleGluPheThrSerCysHi : 342 !||||||:!!!!:|||||||||:!!:!!..!|||||||||||||||||| !|| AlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheThrSerIleHi 1945903 : GCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCA : 1945847 343 : sValIleSerMetAsnLeuGluSerPheAlaIle >>>> Target Intron 4 : 354 ||||:!!|||:!!||||||||||||||| ! ! 74 bp sValValSerValAsnLeuGluSerPheMetAla++ 1945846 : CGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt.................... : 1945809 355 : >>>> LeuLeuLysThrSerTyrSerAlaTyrAsnLeuLeuGlnGlnSerLys : 369 :!!:!!||||||||||||||||||!:!|||:!!:!!|||||||||||| ++ValIleLysThrSerTyrSerAlaPheAsnMetIleGlnGlnSerLys 1945808 : .....agGTAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAACAAAGCAAA : 1945690 vulgar: gi|350424935|ref|XP_003493960.1| 0 369 . KQ414661.1 1947382 1945689 - 884 M 120 360 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 112 336 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 67 201 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945690 1947382 884 - . gene_id 1 ; sequence gi|350424935|ref|XP_003493960.1| ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1947021 1947382 . - . KQ414661.1 exonerate:protein2genome:local exon 1947021 1947382 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1947019 1947020 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946914 1947020 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1946914 1946915 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946575 1946913 . - . KQ414661.1 exonerate:protein2genome:local exon 1946575 1946913 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946573 1946574 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946250 1946574 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1946250 1946251 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946048 1946249 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946249 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946046 1946047 . - . intron_id 3 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945968 1946047 . - . intron_id 3 KQ414661.1 exonerate:protein2genome:local splice3 1945968 1945969 . - . intron_id 2 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945812 1945967 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1945967 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 4 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 4 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 3 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945690 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945690 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945690 1947382 884 - . alignment_id 1 ; Query gi|350424935|ref|XP_003493960.1| ; Align 1947383 1 360 ; Align 1946913 122 336 ; Align 1946249 235 201 ; Align 1945968 302 156 ; Align 1945738 354 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427266|ref|XP_003494705.1| PREDICTED: odorant receptor 49a-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 142 Query range: 122 -> 241 Target range: 14205 -> 13851 123 : LeuGluGluValThrIleArgGlySerLysMetAlaLysLeuTyrArgAsnThrLeuLeu : 142 |||.!.!!: !|||:!! ! !!!! ! !!:!.!|||! !! ! ! !.! !:!! LeuAsnAspGlnThrValTyrPheThrTyrIleValLysTyrSerIleValAsnAlaIle 14205 : TTAAACGACCAAACTGTTTATTTTACGTACATTGTCAAATATTCGATAGTGAACGCGATC : 14148 143 : IleCysMetValLeuPheLeuLeuValProLeuLeuProProMetLeuAspIleValLeu : 162 :!!|||:!::!!||||||:!! !..!|||:!! !|||! !!!:|||||||||:!!||| ValCysValIleLeuPheValThrThrProValThrProHisIleLeuAspIleLeuLeu 14147 : GTTTGTGTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATTTTGGACATTTTACTA : 14088 163 : ProLeuAsnGluThrArgProArgGlnGlnIleLeuAsnValAsnTyrValIlePheAsp : 182 ||| !||||||:!!||| ! ! ! ! |||! ! !.! ||| !.!! !||| ProLysAsnGluSerArgAspValAlaTyrIleTyrProAla---TyrTyrPheThrAsp 14087 : CCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCC---TATTATTTCACCGAC : 14031 183 : SerAsnAsnTyrPhePheTyrValTyrLeuGlnLeuSerTrpThrSerValValValSer : 202 ..!:!!!!.||| ! ! |||:!! ! !!!.:!!:!!! ..!! !:!!||||||! ! GluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPhe 14030 : GAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTT : 13971 203 : IleIleIleValThrValAspSerLeuLeuMetLeuIleValHisHisAsnSerGlyLeu : 222 !:!: !|||.!! !|||!!! !! !!!:! !:!!|||!!.|||..!!!!|||||| TyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeu 13970 : TACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTG : 13911 223 : PheValValCysGlyHisGlnIleGlnLysAsnThrArgHisLeuAsnSerPheThr : 241 !!.!.!|||! !||| :::|||:::......... |||||| |||::: LeuAlaValSerGly***LysIleArgSerLysAsnSer***LeuAsnProPheSer 13910 : TTGGCCGTGTCCGGgtaaaaaattcgatcgaaaaattcgtagcttaaccctttcagt : 13852 vulgar: gi|350427266|ref|XP_003494705.1| 122 241 . KQ414772.1 14205 13851 - 142 M 54 162 G 1 0 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13852 14205 142 - . gene_id 1 ; sequence gi|350427266|ref|XP_003494705.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13852 14205 . - . KQ414772.1 exonerate:protein2genome:local exon 13852 14205 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 13852 14205 142 - . alignment_id 1 ; Query gi|350427266|ref|XP_003494705.1| ; Align 14206 123 162 ; Align 14044 178 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427266|ref|XP_003494705.1| PREDICTED: odorant receptor 49a-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 139 -> 216 Target range: 45964 -> 45736 140 : ThrLeuLeuIleCysMetValLeuPheLeuLeuValProLeuLeuProProMetLeuAsp : 159 |||:!!! !||| ! :!! !:!!|||! ! !!.!||||||:!!||| !!!:|||||| ThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeuAsp 45964 : ACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTGGAC : 45907 160 : IleValLeuProLeuAsnGluThrArgProArgGlnGlnIleLeuAsnValAsnTyrVal : 179 :!!:!!! !||||||||||||:!!||||||||| ! ! !! !!!.!.! ||| ! LeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAla---TyrCys 45906 : CTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCC---TACTGT : 45850 180 : IlePheAspSerAsnAsnTyrPhePheTyrValTyrLeuGlnLeuSerTrpThrSerVal : 199 !|||:!! !!:!!:!!|||!:!!:!|||||| ! ! !||| ! !! !! ! TyrPheAsnProAspAspTyrTyrTyrTyrValValGlyTyrThrSerAlaCysIleGly 45849 : TACTTCAATCCGGACGACTACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATAGGA : 45790 200 : ValValSerIleIleIleValThrValAspSerLeuLeuMetLeuIleVal : 216 :!!!.!.!!:!!:!::!!||| !!.!|||! !:!!:!!!!:! !:!!||| MetAlaGlyLeuValLeuValGlyAlaAspIleIleMetIleHisLeuVal 45789 : ATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATTATGATACATCTTGTA : 45737 vulgar: gi|350427266|ref|XP_003494705.1| 139 216 . KQ414772.1 45964 45736 - 104 M 37 111 G 1 0 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45737 45964 104 - . gene_id 2 ; sequence gi|350427266|ref|XP_003494705.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45737 45964 . - . KQ414772.1 exonerate:protein2genome:local exon 45737 45964 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 45737 45964 104 - . alignment_id 2 ; Query gi|350427266|ref|XP_003494705.1| ; Align 45965 140 111 ; Align 45854 178 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427266|ref|XP_003494705.1| PREDICTED: odorant receptor 49a-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 140 -> 225 Target range: 20577 -> 20325 141 : LeuLeuIleCysMetValLeuPheLeuLeuValProLeuLeuProProMetLeuAspIle : 160 |||!!!:!! ! !!.!:!!||||||! !||||||!!! !||| !!!:||||||||| LeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAspIle 20577 : TTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATT : 20520 161 : ValLeuProLeuAsnGluThrArgProArgGlnGlnIleLeuAsnValAsnTyrValIle : 180 ! !|||||||||:!!|||||| !||| ! :!!! ! !.! ||| ! TyrAlaProLeuAsnLysThrArgLysArgValPheValTyrProAla---TyrTyrTrp 20519 : TACGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCC---TATTACTGG : 20463 181 : PheAspSerAsnAsnTyrPhePheTyrValTyrLeuGlnLeuSerTrpThrSerValVal : 200 .!.||| !!.!..!.|||!:!.!. :!! :!!!!.:!!! !!::..! !:!!:!! MetAspProGluGlnTyrTyrMetIleMetIleIleHisIleMetPheValValIleMet 20462 : ATGGATCCTGAGCAATACTACATGATAATGATAATACACATAATGTTCGTGGTGATCATG : 20403 201 : ValSerIleIleIleValThrValAspSerLeuLeuMetLeuIleValHisHisAsnSer : 220 |||!!!:!!|||.!! !.!! !|||! ! !! !:!!! ! !|||!!.||| !!! ValCysValIlePheCysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCys 20402 : GTCTGTGTCATATTCTGTGCTTGCGACATGAACTACGTGTACGCTGTGCAGCACGCATGC : 20343 221 : GlyLeuPheValVal : 225 ||||||!!.!.!||| GlyLeuLeuAlaVal 20342 : GGCTTATTGGCTGTC : 20326 vulgar: gi|350427266|ref|XP_003494705.1| 140 225 . KQ414772.1 20577 20325 - 103 M 36 108 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20577 103 - . gene_id 3 ; sequence gi|350427266|ref|XP_003494705.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20577 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20577 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 20326 20577 103 - . alignment_id 3 ; Query gi|350427266|ref|XP_003494705.1| ; Align 20578 141 108 ; Align 20470 178 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425706|ref|XP_003494207.1| PREDICTED: odorant receptor 13a-like, partial [Bombus impatiens] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 311 -> 364 Target range: 1345564 -> 1345723 312 : SerThrGlyValGlyGlnAlaAlaTyrGluCysAspTrpTyrAspLeuProProLy : 330 |||:!!! !:!! !||||||..!||| !!:!!||||||||||||||| !|| SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 331 : sAsnAlaIleSerLeuIleIleValIleCysArgAlaLysValSerPheGlnIleT : 349 | !!.!! !|||||||||.!! !|||..!|||:!!:!! ! !!! ! :!!| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 350 : hrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsnAlaVal : 364 ||||||||||||||! ! !|||||||||||| !|||..! !||| hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIleVal 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCGTG : 1345723 vulgar: gi|350425706|ref|XP_003494207.1| 311 364 . KQ414782.1 1345564 1345723 + 116 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345723 116 + . gene_id 1 ; sequence gi|350425706|ref|XP_003494207.1| ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345723 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345723 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345723 116 + . alignment_id 1 ; Query gi|350425706|ref|XP_003494207.1| ; Align 1345565 312 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427979|ref|XP_003494946.1| PREDICTED: odorant receptor 67c-like [Bombus impatiens] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 287 -> 350 Target range: 1345579 -> 1345846 288 : AspSerValTyrPheCysSerTrpTyrHisIleProLysAsnValAlaLysGlyIl : 306 .!.:!! !|||||| !!!:!|||||| !!:!!||| ! !!. !.!!::!..!:! GlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLysTyrThrArgSerLe 1345580 : CAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAAATACACGCGATCGTT : 1345634 307 : eValPheValIleMetLysSerGlnAspProValSerLeuLysAlaGlyLysPheP : 325 !:!!||| !||| :::|||||| ! ||| !! !|||! !||||||||||||! uIlePheCysIleAlaArgSerGlnLysProSerTyrLeuThrAlaGlyLysPheT 1345635 : AATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAGCTGGCAAGTTCT : 1345691 326 : heIleValAsnMetGluThrTyrMetAsn >>>> Target Intron 1 >>>> : 335 :!:!: !!::::!:||||||!:! ! ! 78 bp yrValPheSerLeuGluThrPheGlyIle++ 1345692 : ACGTGTTCTCGTTAGAAACATTCGGCATCgt......................... : 1345723 336 : IleLeuLysThrSerMetSerTyrLeuSerValLeuArgValMetVal : 350 |||:!!|||.!!||||||:!!|||||||||||||||!:! !!!::!! ++IleValLysAlaSerMetAlaTyrLeuSerValLeuLysSerIleIle 1345724 : agATAGTAAAAGCGTCGATGGCCTATCTTTCCGTTCTGAAAAGCATTATC : 1345846 vulgar: gi|350427979|ref|XP_003494946.1| 287 350 . KQ414782.1 1345579 1345846 + 141 M 47 141 5 0 2 I 0 74 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345580 1345846 141 + . gene_id 1 ; sequence gi|350427979|ref|XP_003494946.1| ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345580 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345580 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345846 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345846 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345580 1345846 141 + . alignment_id 1 ; Query gi|350427979|ref|XP_003494946.1| ; Align 1345580 288 141 ; Align 1345799 335 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr174 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 121 -> 200 Target range: 26228 -> 25991 122 : IlePhePheLeuSerIlePheGlyAsnAsnIleLeuAspIleLeuIleProLeuAsnHis : 141 :!!|||.!.! !! ! |||! !::: |||||||||||||||!!:|||||||||.!. LeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGlu 26228 : CTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAG : 26171 142 : ThrArgProArgThrValProIleValIleAspTyrPheValAspGlnGlnLysPhePhe : 161 |||||| !!||| ! !! ! ! ! ! !!||||||||||||:!!.!.|||!:! ! ThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHis 26170 : ACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCAT : 26111 162 : AsnPhePheGlyMetHisLeuAsnLeuIleThrSerPheGlyGlyLeuGlyIleIleAla : 181 !!!!..!!! ! !|||:!! !!|||:!!..! !.!. ! !! !! !.!! !||| TyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 26110 : TACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 26051 182 : ThrGluThrIleSerMetAlaMetMetGlnHisLeuCysGlyLeuLeuLysIleSer : 200 !!!:.!!! !! !:!! ! :!!|||||| !|||||||||||| |||:!! CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla 26050 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCA : 25992 vulgar: AfOr174 121 200 . LHQN01017803.1 26228 25991 - 108 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25992 26228 108 - . gene_id 1 ; sequence AfOr174 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25992 26228 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25992 26228 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25992 26228 108 - . alignment_id 1 ; Query AfOr174 ; Align 26229 122 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427266|ref|XP_003494705.1| PREDICTED: odorant receptor 49a-like [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 147 Query range: 122 -> 241 Target range: 14242 -> 13888 123 : LeuGluGluValThrIleArgGlySerLysMetAlaLysLeuTyrArgAsnThrLeuLeu : 142 |||.!.!!: !|||:!! ! !!!! ! !!:!.!|||! !! ! ! !.! !:!! LeuAsnAspGlnThrValTyrPheThrTyrIleValLysTyrSerIleAlaAsnAlaIle 14242 : TTAAACGACCAAACTGTTTATTTTACGTACATTGTCAAATATTCGATAGCGAACGCGATC : 14185 143 : IleCysMetValLeuPheLeuLeuValProLeuLeuProProMetLeuAspIleValLeu : 162 :!!|||:!::!!||||||:!!! !..!|||:!! !|||! !!!:|||||||||:!!||| ValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeu 14184 : GTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTA : 14125 163 : ProLeuAsnGluThrArgProArgGlnGlnIleLeuAsnValAsnTyrValIlePheAsp : 182 ||| !||||||:!!||| ! ! ! ! |||! ! !.! ||| !.!! !||| ProLysAsnGluSerArgAspValAlaTyrIleTyrProAla---TyrTyrPheThrAsp 14124 : CCGAAGAACGAGTCACGAGACGTAGCGTACATTTATCCGGCC---TATTATTTCACCGAC : 14068 183 : SerAsnAsnTyrPhePheTyrValTyrLeuGlnLeuSerTrpThrSerValValValSer : 202 ..!:!!!!.||| ! ! |||:!! ! !!!.:!!:!!! ..!! !:!!||||||! ! GluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPhe 14067 : GAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTT : 14008 203 : IleIleIleValThrValAspSerLeuLeuMetLeuIleValHisHisAsnSerGlyLeu : 222 !:!: !|||.!! !|||!!! !! !!!:! !:!!|||!!.|||..!!!!|||||| TyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeu 14007 : TACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTG : 13948 223 : PheValValCysGlyHisGlnIleGlnLysAsnThrArgHisLeuAsnSerPheThr : 241 !!.!.!|||! !||| :::|||:::...||| ! ! |||||| !!|||!:! LeuAlaValSerGly***LysIleArgSerAsnAspSer***LeuAsnProPheSer 13947 : TTGGCCGTGTCCGGgtaaaaaattcgatcgaacgattCGTAGCTCAACCCTTTCAGT : 13889 vulgar: gi|350427266|ref|XP_003494705.1| 122 241 . LHQN01017803.1 14242 13888 - 147 M 54 162 G 1 0 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13889 14242 147 - . gene_id 1 ; sequence gi|350427266|ref|XP_003494705.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13889 14242 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13889 14242 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 13889 14242 147 - . alignment_id 1 ; Query gi|350427266|ref|XP_003494705.1| ; Align 14243 123 162 ; Align 14081 178 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427266|ref|XP_003494705.1| PREDICTED: odorant receptor 49a-like [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 140 -> 231 Target range: 26246 -> 25976 141 : LeuLeuIleCysMetValLeuPheLeuLeuValProLeuLeuProProMetLeuAspIle : 160 :!!! !:!!||| !.!||||||:!!! !:!!|||!!!:!! !!|||!!:||||||||| IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIle 26246 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATC : 26189 161 : ValLeuProLeuAsnGluThrArgProArgGlnGlnIleLeuAsnValAsnTyrValIle : 180 :!!:!!|||||||||||||||||| !!||| ! :!!! ! !.! !!||| !!:!! LeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal 26188 : CTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC : 26129 181 : PheAspSerAsnAsnTyrPhePheTyrValTyrLeuGlnLeuSerTrpThrSerValVal : 200 |||..!:!!!!.||| !!:!! :!! !!!.:!!! ! ..! !|||:!! ---AspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMet 26128 : ---GACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATG : 26072 201 : ValSerIleIleIleValThrValAspSerLeuLeuMetLeuIleValHisHisAsnSer : 220 :!!! ! !:!!.!! !.!! !|||:!! !! !:!!! ! !|||!!.||| !!!! LeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCys 26071 : CTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGC : 26012 221 : GlyLeuPheValValCysGlyHisGlnIleGln : 231 ||||||!!.!.!:!!...||| ! !:!!||| GlyLeuLeuAlaIleAlaGly***LeuValGln 26011 : GGATTGTTGGCCATTGCAGGGTAATTAGTTCAA : 25977 vulgar: gi|350427266|ref|XP_003494705.1| 140 231 . LHQN01017803.1 26246 25976 - 118 M 40 120 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25977 26246 118 - . gene_id 2 ; sequence gi|350427266|ref|XP_003494705.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25977 26246 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25977 26246 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25977 26246 118 - . alignment_id 2 ; Query gi|350427266|ref|XP_003494705.1| ; Align 26247 141 120 ; Align 26127 182 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427266|ref|XP_003494705.1| PREDICTED: odorant receptor 49a-like [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 139 -> 216 Target range: 33711 -> 33483 140 : ThrLeuLeuIleCysMetValLeuPheLeuLeuValProLeuLeuProProMetLeuAsp : 159 |||:!!! !||| ! :!! !:!!|||! ! !!.!||||||:!!||| !!!:|||||| ThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeuAsp 33711 : ACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTGGAC : 33654 160 : IleValLeuProLeuAsnGluThrArgProArgGlnGlnIleLeuAsnValAsnTyrVal : 179 :!!:!!! !||||||||||||:!!||||||||| ! ! !! !!!.!.! ||| ! LeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAla---TyrCys 33653 : CTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCC---TACTGT : 33597 180 : IlePheAspSerAsnAsnTyrPhePheTyrValTyrLeuGlnLeuSerTrpThrSerVal : 199 !|||:!! !!:!!:!!|||!:!!:!|||||| ! ! !||| ! !! !! ! TyrPheAsnProAspAspTyrTyrTyrTyrValValGlyTyrThrSerAlaCysIleGly 33596 : TACTTCAATCCGGACGACTACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATAGGA : 33537 200 : ValValSerIleIleIleValThrValAspSerLeuLeuMetLeuIleVal : 216 :!!!.!.!!:!!:!::!!||| !!.!|||! !:!!:!!!!:! !:!!||| MetAlaGlyLeuValLeuValGlyAlaAspIleIleMetIleHisLeuVal 33536 : ATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATTATGATACATCTTGTA : 33484 vulgar: gi|350427266|ref|XP_003494705.1| 139 216 . LHQN01017803.1 33711 33483 - 104 M 37 111 G 1 0 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33484 33711 104 - . gene_id 3 ; sequence gi|350427266|ref|XP_003494705.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33484 33711 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33484 33711 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 33484 33711 104 - . alignment_id 3 ; Query gi|350427266|ref|XP_003494705.1| ; Align 33712 140 111 ; Align 33601 178 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350423776|ref|XP_003493588.1| PREDICTED: odorant receptor 67c-like [Bombus impatiens] Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 1306 Query range: 0 -> 400 Target range: 4393578 -> 4395880 1 : MetLysGluLeuSer<->ThrThrPheAspTyrTyrIleLeuProAsnLysIlePh : 18 ||||||||||||||| .!!:!!.!!||||||||||||||||||||||||||||| MetLysGluLeuSerLysAlaSerIleAspTyrTyrIleLeuProAsnLysIlePh 4393579 : ATGAAAGAACTCTCTAAAGCGTCGATCGATTATTATATACTACCGAACAAGATCTT : 4393633 19 : eCysSerIleValGlyIleTrpProIleGlyGluArgSerSerThrCysSerLysI : 37 ||||||||||!.!|||!!:|||||||||! !|||!:!||||||||| !!||||||: eCysSerIleAlaGlyMetTrpProIleAspGluLysSerSerThrArgSerLysL 4393634 : TTGTAGTATAGCTGGAATGTGGCCTATCGACGAGAAAAGTTCAACGCGTAGCAAAC : 4393690 38 : lePheAlaTyrPheArgLeuIleValSerLeuIleAlaIleSerAsnPhePheVal : 55 !!||||||||||||||||||||| !!.!!|||! |||||||||!:! !!|||||| euPheAlaTyrPheArgLeuIlePheGlyLeuThrAlaIleSerSerValPheVal 4393691 : TATTCGCATACTTCCGTCTGATATTCGGATTAACGGCAATCAGTAGTGTCTTCGTG : 4393744 56 : ProGluIleMetAlaValAlaPheTyrTrpGlyAspValGluThrValIle{G} : 73 |||||||||||||||:!!!.!!:: !!|||||||||:!!..!! !:!! !{|} ProGluIleMetAlaIleValTrpAsnTrpGlyAspIleArgIleLeuAla{G}+- 4393745 : CCAGAAATTATGGCGATAGTGTGGAATTGGGGTGACATAAGAATCTTGGCA{G}gc : 4393799 74 : >>>> Target Intron 1 >>>> {ly}IleGlySerAsnLeuMetSerAlaT : 82 311 bp {||}:!!|||!!! !|||! !!!!.! ++{ly}ValGlyCysValLeuThrThrValG 4393800 : .........................ag{GA}GTAGGATGCGTTTTAACAACAGTCG : 4394136 83 : hrGlnLeuPhePheLysMetIleTyrLeuValAlaArgArgGluArgValTyrArg : 100 !||||||...||||||||||||||||||:!!|||||||||!!:!:!..!|||!:! lyGlnLeuLeuPheLysMetIleTyrLeuIleAlaArgArgAspLysThrTyrLys 4394137 : GACagttattattcaaaatgATTTACCTAATAGCGAGAAGGGACAAAACGTACAAG : 4394190 101 : LeuTyrAsnGluIleArgIleLeuTrpAspSerThrAspAspProAsnGluArgLy : 119 |||! !|||||||||||| !||||||||||||:!!|||||||||!!.||||||:! LeuCysAsnGluIleArgAspLeuTrpAspSerSerAspAspProLysGluArgGl 4394191 : CTTTGCAACGAAATACGTGATCTATGGGATTCATCCGATGATCCAAAAGAAAGACA : 4394247 120 : sSerTyrGluGlnIleAlaTyrGlnAlaArgIleValThrIleThrPheSerSerC : 138 !|||||||||:!!:!!|||:!! !||||||! !:!!||||||! !|||! !|||! nSerTyrGluGluLeuAlaHisTrpAlaArgAsnLeuThrIleIlePheTyrSerS 4394248 : GTCCTACGAAGAGCTCGCTCATTGGGCAAGAAACCTTACGATAATCTTTTACTCGT : 4394304 139 : ysPheLeuCysAsnLeuThrThrPheSerIleAlaThrIleAlaAspTyrPheArg : 156 !! !:!!||||||:!! !||||||!!!||||||.!! ! !|||||||||! ! erCysMetCysAsnValPheThrPheThrIleAlaAlaAlaPheAspTyrPheThr 4394305 : CCTGCATGTGCAACGTGTTCACATTCACGATTGCCGCAGCCTTCGATTATTTCACG : 4394358 157 : PheAlaTyrAsnGlyAsnAsnThrAsnAspAsnArgHisLeuProPheLeuVal{T : 175 .!!! !|||!:!! !!:!:!!.!!:!! ! !:!||||||||||||||| !|||{| IleGluTyrSerValSerAspAlaAspLysSerArgHisLeuProPheGluVal{T 4394359 : ATCGAATACAGCGTCAGCGATGCTGATAAAAGTCGACACTTGCCCTTCGAAGTC{T : 4394415 176 : r} >>>> Target Intron 2 >>>> {p}TyrGlyThrAspIleSerAlaS : 183 |} 189 bp {|}||||||! !||||||!!! !!| r}++ ++{p}TyrGlyIleAspIleThrProS 4394416 : G}gt.........................ag{G}TATGGAATAGACATCACACCGT : 4394628 184 : erProLysPheGluIleAlaPheValGlyGlnValMetThrAlaMetIleGlyLeu : 201 |||||:::|||||||||||||||:!! !!|||:!!:!:.!!:!!|||||| !! ! erProArgPheGluIleAlaPheLeuCysGlnIleValAlaSerMetIleCysAla 4394629 : CTCCTCGCTTCGAGATCGCTTTCCTTTGTCAAATCGTAGCATCTATGATCTGCGCA : 4394682 202 : SerAlaIleThrAlaIleAspCysThrPheMetThrMetIleLeuHisValSerGl : 220 :!!||||||:!!!.!:!:|||...||||||||||||! !||||||||||||||||| AlaAlaIleSerGlyLeuAspAlaThrPheMetThrThrIleLeuHisValSerGl 4394683 : GCCGCGATCTCAGGCTTGGACGCGACGTTTATGACCACGATTCTACACGTGTCTGG : 4394739 221 : yGlnPheIleLeuIleLysThrTrpIleAsnLysIleGlyPheGluMetSerHisL : 239 |||||||! !||||||!!.! !||||||!:!|||||||||.!.|||!!:!:! !: yGlnPheLysLeuIleAsnArgTrpIleSerLysIleGlyIleGluIleAsnIleG 4394740 : TCAATTCAAATTGATCAACAGATGGATCAGTAAGATTGGAATAGAGATAAATATCG : 4394796 240 : ysSerIleAspMetAspLysPheGluGluAspLeuPheLysCysIleArgHisHis : 257 !! !! ! !! ! |||!!.:!!! !:!!|||.!!|||||||||||||||||| luProAspTyrProArgLysLeuLysAlaAsnLeuIleLysCysIleArgHisHis 4394797 : AGCCCGATTATCCGCGAAAATTAAAAGCGAATCTGATCAAATGCATTCGCCATCAC : 4394850 258 : GlnArgMetIle{Hi} >>>> Target Intron 3 >>>> {s}ValValAs : 265 ||||||||||||{:!} 131 bp {!}|||||||| GlnArgMetIle{As}++ ++{n}ValValAs 4394851 : CAACGAATGATA{AA}gt.........................ag{C}GTTGTGAA : 4395005 266 : nAspValAsnAsnLeuLeuThrProIleIlePheMetGlnLeuLeuThrSerGlyL : 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||: nAspValAsnAsnLeuLeuThrProIleIlePheMetGlnLeuLeuThrSerGlyI 4395006 : CGacgtgaataatttattaacaccCATCATTTTCATGCAACTTCTTACGAGCGGAA : 4395062 285 : euGluIleCysLeuSerGlyTyrAlaMetLeuAspAsnGlyThrLysIleThrAsp : 302 !!||||||||||||||||||!:!|||:!!:!!|||||||||||| |||||| leGluIleCysLeuSerGlyPheAlaValIleAspAsnGlyThrGly---ThrAsp 4395063 : TAGAGATTTGTTTGAGTGGATTCGCGGTGATCGATAACGGCACCGGT---ACCGAT : 4395113 303 : IleLeuLysPheThrSerTyrPheIleSerValThrValGlnLeuLeuLeuTrpCy : 321 :!!|||||||||..!||||||!!.! !|||:!! !|||||||||||||||||||| LeuLeuLysPheValSerTyrLeuThrSerMetGlyValGlnLeuLeuLeuTrpCy 4395114 : CTTCTCAAATTTGTGTCTTATTTAACCTCGATGGGGGTGCAACTTTTGCTATGGTG : 4395170 322 : sTrpProGlyGluIleLeuValGlnGluSerGlnGluValGlyGlnValValTyrP : 340 ||||||||||||||||||||||||||||||| !|||:!!|||!!.|||||||||. sTrpProGlyGluIleLeuValGlnGluSerLeuGluIleGlyHisValValTyrL 4395171 : TTGGCCTGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGTCATGTAGTCTATC : 4395227 341 : heSerValProTrpTyrAsnLeuProProIleTyrArgAsnHisValCysLeuMet : 358 !.!:!:!!|||||||||||||||||||||||||||!:!!!.!!.:!!||||||||| euAsnIleProTrpTyrAsnLeuProProIleTyrGlnLysGlnLeuCysLeuMet 4395228 : TAAATATACCATGGTACAATTTACCACCGATTTATCAGAAACAACTTTGCCTGATG : 4395281 359 : IleIleArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPheLysValLeuSe : 377 |||||||||||||||||||||||||||||||||||||||||||||:!!..!||||| IleIleArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPheGlnThrLeuSe 4395282 : ATCATTAGGGCCCAACAGTATTGCAGCATTACGGCATTAACGTTTCAAACGTTGTC : 4395338 378 : rIleGlnThrLeuThrAla >>>> Target Intron 4 >>>> ValPheAs : 386 ||||!!.|||||||||||| 471 bp |||||||| rIleHisThrLeuThrAla++ ++ValPheAs 4395339 : TATTCACACGTTAACAGCCgt.........................agGTATTCAA : 4395836 387 : nThrAlaIleSerTyrPheThrValLeuGlnGlnMetGlnGln : 400 ||||||| !||||||||||||:!!|||!:!|||||||||||| nThrAlaAlaSerTyrPheThrLeuLeuArgGlnMetGlnGln 4395837 : TACAGCTGCTTCGTATTTTACTTTGCTGCGACAAATGCAGCAA : 4395880 vulgar: gi|350423776|ref|XP_003493588.1| 0 400 . KQ414784.1 4393578 4395880 + 1306 M 5 15 G 0 3 M 67 201 S 0 1 5 0 2 I 0 307 3 0 2 S 1 2 M 101 303 S 0 2 5 0 2 I 0 185 3 0 2 S 1 1 M 86 258 S 0 2 5 0 2 I 0 127 3 0 2 S 1 1 M 37 111 G 1 0 M 83 249 5 0 2 I 0 467 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4393579 4395880 1306 + . gene_id 1 ; sequence gi|350423776|ref|XP_003493588.1| ; gene_orientation + KQ414784.1 exonerate:protein2genome:local cds 4393579 4393798 . + . KQ414784.1 exonerate:protein2genome:local exon 4393579 4393798 . + . insertions 3 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4393799 4393800 . + . intron_id 1 ; splice_site "GC" KQ414784.1 exonerate:protein2genome:local intron 4393799 4394109 . + . intron_id 1 KQ414784.1 exonerate:protein2genome:local splice3 4394108 4394109 . + . intron_id 0 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394110 4394416 . + . KQ414784.1 exonerate:protein2genome:local exon 4394110 4394416 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4394417 4394418 . + . intron_id 2 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4394417 4394605 . + . intron_id 2 KQ414784.1 exonerate:protein2genome:local splice3 4394604 4394605 . + . intron_id 1 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394606 4394866 . + . KQ414784.1 exonerate:protein2genome:local exon 4394606 4394866 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4394867 4394868 . + . intron_id 3 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4394867 4394997 . + . intron_id 3 KQ414784.1 exonerate:protein2genome:local splice3 4394996 4394997 . + . intron_id 2 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394998 4395358 . + . KQ414784.1 exonerate:protein2genome:local exon 4394998 4395358 . + . insertions 0 ; deletions 1 KQ414784.1 exonerate:protein2genome:local splice5 4395359 4395360 . + . intron_id 4 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4395359 4395829 . + . intron_id 4 KQ414784.1 exonerate:protein2genome:local splice3 4395828 4395829 . + . intron_id 3 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4395830 4395880 . + . KQ414784.1 exonerate:protein2genome:local exon 4395830 4395880 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local similarity 4393579 4395880 1306 + . alignment_id 1 ; Query gi|350423776|ref|XP_003493588.1| ; Align 4393579 1 15 ; Align 4393597 6 201 ; Align 4394112 74 303 ; Align 4394607 176 258 ; Align 4394999 263 111 ; Align 4395110 301 249 ; Align 4395830 384 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425706|ref|XP_003494207.1| PREDICTED: odorant receptor 13a-like, partial [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 1182 Query range: 0 -> 317 Target range: 35948 -> 37946 1 : LeuGlyValTrpProGluProArgLysValSerArgGlySerArgLeuLeuSerSerIle : 20 |||||||||||||||||||||||||||:!!|||!.! !||||||!!! !|||!:!.!! LeuGlyValTrpProGluProArgLysMetSerAsnLeuSerArgPheAlaSerAsnPhe 35949 : CTTGGCGTGTGGCCAGAACCGAGAAAGATGTCTAACCTGTCACGATTCGCGTCTAACTTT : 36006 21 : IlePheTrpPheThrThrIleValThrPheThrPheIleCysAlaProGlnThrAlaAsn : 40 ||||||||||||||||||:!::!!||| !!..!||||||||||||||||||! !.!!:!! IlePheTrpPheThrThrLeuIleThrValValPheIleCysAlaProGlnMetThrHis 36007 : ATATTCTGGTTCACGACTTTGATAACGGTTGTCTTCATATGCGCTCCCCAAATGACGCAT : 36066 41 : LeuValLeuLysSerThrAsnLeuAspGluIleIleGluAsnLeuSerIleAsnIlePro : 60 ||||||||||||||||||||||||||||||:!:|||||||||||||||:!!||||||||| LeuValLeuLysSerThrAsnLeuAspGluValIleGluAsnLeuSerValAsnIlePro 36067 : TTGGTAttaaaatcgacgaatttgGACGAGGTGATAGAGAATCTGTCGGTCAACATACCG : 36126 61 : IleAlaPheAlaLeuValLysGlnIleValLeuArgTyrTyrLysLys{A} >>>> Ta : 77 !!: !|||:!!|||! !|||||||||:!!||||||||| !!:!|||{|} MetLeuPheSerLeuGlyLysGlnIleIleLeuArgTyrArgArgLys{A}++ 36127 : ATGCTCTTCTCATTGGGCAAGCAAATCATTCTGCGTTATCGTAGAAAA{G}gt....... : 36180 78 : rget Intron 1 >>>> {la}LeuThrLeuLeuLeuSerGlnMetPheAspAspTrp : 89 381 bp {||}|||..!!!!|||:!!||||||!!:|||||||||||| ++{la}LeuValPheLeuMetSerGlnIlePheAspAspTrp 36181 : ..................ag{CG}CTAGTATTCTTAATGAGCCAAATATTCGACGACTGG : 36594 90 : AsnGluProIleAlaAsnGlnAspArgGlnThrMetLeuLysAsnAlaLysIleSerArg : 109 ||||||||| !!.!. !||||||!!.||||||||||||!.!||||||||||||||| AlaGluProIleProGluValAspArgHisThrMetLeuLysThrAlaLysIleSerArg 36595 : GCGGAACCAATCCCGGAGGTGGATCGCCACACGATGCTGAAGACCGCGAAAATTAGTCGA : 36654 110 : MetIleSerIleValCysSerThrLeuThrTyrLeuMetLeuPheAlaPheIleSerLeu : 129 |||||||||||||||||||||! !|||||||||:!!|||:!!!!.||||||:!:|||||| MetIleSerIleValCysSerIleLeuThrTyrValMetValLeuAlaPheLeuSerLeu 36655 : ATGATATCCATAGTCTGTTCTATCCTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTT : 36714 130 : GlnIleTrpSerAsnMetGlnSerAlaSerGluAlaAspLeuGlyGlyLeuLeuHisPro : 149 ||||||||||||!:!||||||!:!.!!|||||| !:!!:!!|||||||||||| !||| GlnIleTrpSerSerMetGlnAsnThrSerGluPheAsnValGlyGlyLeuLeuIlePro 36715 : CAAATTTGGAGCAGCATGCAAAACACCTCGGAGTTCAACGTAGGAGGACTACTTATCCCG : 36774 150 : AlaThrPheProTyrAspIleSerLysSerProAsnPheGluIleThrTrpLeuGlyGln : 169 ||||||||||||||||||! !:!||||||||||||!:!||||||||||||||||||||| AlaThrPheProTyrAspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGln 36775 : GCCACATTTCCATACGACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAA : 36834 170 : PheMetGlyThrValLeuThrAlaIleCysTyrSerCysPheAspThrPheLeuAlaVal : 189 |||:!!||||||||||||!:!||||||||||||||||||||||||||||||:!!|||||| PheValGlyThrValLeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaVal 36835 : TTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTT : 36894 190 : LeuValLeuHisLeuCysGlyGlnLeuThrValLeuArgMetAlaLeuGluAspLeuAla : 209 ||||||||||||:!!||||||||||||||||||||||||!!:|||||||||:!!|||||| LeuValLeuHisIleCysGlyGlnLeuThrValLeuArgIleAlaLeuGluAsnLeuAla 36895 : CTCGTGTTACACATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTCGAGAATCTTGCT : 36954 210 : AsnThrThrLysLysAspAsnAsnTyrAlaArgPheHisGluArgLeuGlyPheIleVal : 229 |||||||||! !|||||| ||||||::!!:!|||!!.||||||||||||!:!|||||| AsnThrThrIleLysAsp---AsnTyrSerLysPheGlnGluArgLeuGlyTyrIleVal 36955 : AACACGACAATAAAAGAC---AACTACAGCAAGTTCCAAGAACGATTAGGATACATTGTG : 37011 230 : AsnArgHisAsnLeuLeuSer{Ar} >>>> Target Intron 2 >>>> {g}Phe : 238 :!!|||!!.|||! !|||! !{||} 534 bp {|}::! HisArgGlnAsnGlnLeuPhe{Ar}++ ++{g}Tyr 37012 : CACAGGCAGAATCAATTGTTC{AG}gt.........................ag{g}taC : 37572 239 : AlaValIleValGluAspCysPheAsnLeuThrLeuLeuIleGlnThrValIleCysThr : 258 |||||||||||||||||||||||||||:!!! !||||||:!!||||||:!!!!:|||||| AlaValIleValGluAspCysPheAsnIleMetLeuLeuValGlnThrLeuMetCysThr 37573 : GCTGTGATAGTGGAAGATTGCTTCAACATCATGCTGCTCGTTCAAACTTTAATGTGCACC : 37632 259 : AlaMetPheCysLeuThrGlyTyrArgMetIleThr >>>> Target Intron 3 > : 271 ||||||.!!|||:!!|||||||||||||||!!:||| 135 bp AlaMetLeuCysMetThrGlyTyrArgMetMetThr++ 37633 : GCCATGCTCTGTATGACTGGATATCGCATGATGACCgt...................... : 37673 272 : >>> SerValAspGlnGluGlnAlaAspValProIleValGlyMetMetPhePheIleI : 289 ||||||:!!|||||||||! !||||||||||||:!!|||::::::||||||||| ++SerValAsnGlnGluGlnGluAspValProIleIleGlyValIlePhePheIleS 37674 : ...agTCTGTTAATCAGGAGCAAGAGGATGTACCGATTATTggagtaatattttttatct : 37860 290 : leHisValIleTyrThrMetLeuHisLeuPheIleTyrCysTyrIleGlyGluMetLeuL : 309 ||||||! !|||||||||||||||||||||||||||||||||:::||||||! |||| erHisValThrTyrThrMetLeuHisLeuPheIleTyrCysTyrValGlyGluThrLeuL 37861 : caCACGTGACCTATACCATGTTAcatctatttatttattgctacgtGGGCGAAACACTTC : 37920 310 : euGlyGluSerThrGlyValGlyGln : 317 |||||:!! !!:!!.!:!!...::: euGlyGlnValSerAlaLeuAsnArg 37921 : TTGGACAAGTGAGTGCTCTAAAcaga : 37946 vulgar: gi|350425706|ref|XP_003494207.1| 0 317 . KQ414804.1 35948 37946 + 1182 M 76 228 S 0 1 5 0 2 I 0 377 3 0 2 S 1 2 M 138 414 G 1 0 M 20 60 S 0 2 5 0 2 I 0 530 3 0 2 S 1 1 M 33 99 5 0 2 I 0 131 3 0 2 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 35949 37946 1182 + . gene_id 1 ; sequence gi|350425706|ref|XP_003494207.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 35949 36177 . + . KQ414804.1 exonerate:protein2genome:local exon 35949 36177 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 36178 36179 . + . intron_id 1 ; splice_site "gt" KQ414804.1 exonerate:protein2genome:local intron 36178 36558 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 36557 36558 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 36559 37036 . + . KQ414804.1 exonerate:protein2genome:local exon 36559 37036 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local splice5 37037 37038 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 37037 37570 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 37569 37570 . + . intron_id 1 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 37571 37670 . + . KQ414804.1 exonerate:protein2genome:local exon 37571 37670 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 37671 37672 . + . intron_id 3 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 37671 37805 . + . intron_id 3 KQ414804.1 exonerate:protein2genome:local splice3 37804 37805 . + . intron_id 2 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 37806 37946 . + . KQ414804.1 exonerate:protein2genome:local exon 37806 37946 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 35949 37946 1182 + . alignment_id 1 ; Query gi|350425706|ref|XP_003494207.1| ; Align 35949 1 228 ; Align 36561 78 414 ; Align 36975 217 60 ; Align 37572 238 99 ; Align 37806 271 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425706|ref|XP_003494207.1| PREDICTED: odorant receptor 13a-like, partial [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 292 Query range: 236 -> 378 Target range: 33631 -> 34668 237 : ArgPheAlaValIleValGluAspCysPheAsnLeuThrLeuLeuIleGlnThrValIle : 256 |||||||||..!!!::!!||||||||||||||| ! !||||||||||||! !:!!:!! ArgPheAlaThrMetIleGluAspCysPheAsnThrLeuLeuLeuIleGlnMetLeuLeu 33632 : aGGTTCGCAACTATGATCGAGGATTGTTTCAACACATTGCTATTAATTCAGATGCTGCTC : 33689 257 : CysThrAlaMetPheCysLeuThrGlyTyrArgMetIleThr >>>> Target Intr : 271 ||||||!.! .!.|||!!! !|||!:! !.!..!! ! 74 bp CysThrValGluIleCysPheGlnGlyPheLeuPhePheAsp++ 33690 : TGTACCGTCGAAATATGCTTTCAAGGCTTTTTATTCTTCGATgt................ : 33736 272 : on 1 >>>> SerValAspGlnGluGlnAlaAspValProIleValGlyMetMetPheP : 287 !:!! :!!.!.:!! !! :!! !! !||| !:!!:!:|||| ++ValIleLeuGluAsnGluLysGlyIlePheAsnValGlnLeuLeuPheP 33737 : .........agGTGATACTAGAAAACGAGAAAGGAATATTCAACGTGCAATTGCTTTTCT : 33856 288 : heIleIleHisValIleTyrThrMetLeuHisLeuPheIleTyrCysTyrIleGlyGluM : 307 ||:!::!: !||| !!:!! !:!::!!|||:!!!:!|||||||||||||||||||||| heValLeuPheValCysPheIleLeuValHisIleTyrIleTyrCysTyrIleGlyGluM 33857 : TCGTGCTGTTCGTATGCTTCATCCTTGTACACATCTACATTTATTGTTACATAGGAGAGA : 33916 308 : etLeuLeuGlyGlu >>>> Target Intron 2 >>>> SerThrGlyValGlyGl : 317 |||||||| !.!. 454 bp |||! !! !:!!.!!.! etLeuLeuThrHis+- ++SerArgGluMetSerAs 33917 : TGCTACTCACACATgc.........................agAGCAGAGAAATGAGCAA : 34400 318 : nAlaAlaTyrGluCysAspTrpTyrAspLeuProProLysAsnAlaIleSerLeuIleIl : 337 .:!!|||||||||! :!!||||||:!!:!! !!||| !.!.|||! !!!|||:!!.! nSerAlaTyrGluSerAsnTrpTyrAsnValSerProProGluAlaLysCysLeuLeuPh 34401 : TTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCAGAAGCCAAGTGCCTTTTATT : 34460 338 : eValIleCysArgAlaLysValSerPheGlnIleThrAlaGlyLysPheSerProPheSe : 357 !:!!!!: !|||.!! ! !!.!! :!:|||||||||||||||||| !!||||| eIleMetHisArgThrAlaArgProLeuCysLeuThrAlaGlyLysPheSerThrPheSe 34461 : TATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCAGGAAAATTCAGTACCTTCTC : 34520 358 : rLeuGluLeuPheAsnAla >>>> Target Intron 3 >>>> ValLeuLysThr : 367 |:!!|||:!!|||!:!.!! 83 bp :::||||||||| rMetGluMetPheSerThr++ ++IleLeuLysThr 34521 : CATGGAAATGTTCAGTACTgt.........................agattcTGAAAACA : 34633 368 : SerAlaGlyTyrLeuSerValLeuLeuAlaMet : 378 :!! !|||||||||||||||||||||.!!:!: AlaMetGlyTyrLeuSerValLeuLeuThrVal 34634 : GCAATGGGATATCTTTCAGTTCTCCTCACAGTT : 34668 vulgar: gi|350425706|ref|XP_003494207.1| 236 378 . KQ414804.1 33631 34668 + 292 M 34 102 5 0 2 I 0 70 3 0 2 M 41 123 5 0 2 I 0 450 3 0 2 M 52 156 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33632 34668 292 + . gene_id 2 ; sequence gi|350425706|ref|XP_003494207.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33632 33733 . + . KQ414804.1 exonerate:protein2genome:local exon 33632 33733 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33734 33735 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 33734 33807 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 33806 33807 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 33808 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33808 33930 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 2 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 1 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 3 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 3 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 2 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34668 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34668 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33632 34668 292 + . alignment_id 2 ; Query gi|350425706|ref|XP_003494207.1| ; Align 33632 237 102 ; Align 33808 271 123 ; Align 34385 312 156 ; Align 34624 364 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425706|ref|XP_003494207.1| PREDICTED: odorant receptor 13a-like, partial [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 282 Query range: 0 -> 236 Target range: 30830 -> 31605 1 : LeuGlyValTrpProGluProArgLysValSerArgGlySerArgLeuLeuSerSerIle : 20 :!!|||:!!||||||||||||!!!!:! !..!!:! !!!!!! ! !!!!!.!:!!:!: ValGlyIleTrpProGluProSerArgSerAspGlnArgTrpProAsnPheLysAlaLeu 30831 : GTTGGAATTTGGCCAGAACCGAGCAGATCTGATCAACGATGGCCGAATTTCAAGGCTTTG : 30888 21 : IlePheTrpPheThrThrIleValThrPheThrPheIleCysAlaProGlnThrAlaAsn : 40 :!:||| |||... ||| ||| !!.!||||||!:!!.!||| LeuPheIlePheValIleIlePhe---------PheGlyThrGlyProGlnSerValAsn 30889 : CTGTTCATTTTTGtgataatattt---------tttggaaCCGGACCTCAGAGCGTGAAT : 30939 41 : LeuValLeuLysSerThrAsnLeuAspGluIleIleGluAsnLeuSer<->IleAsnIle : 59 |||:!!!!!! !!!! !:!!|||! !:!!! |||||||||||| !|||||| LeuLeuPheIleTrpGlyAspLeuGlyLeuValThrGluAsnLeuSerThrAlaAsnIle 30940 : CTACTTTTCATATGGGGAGACCTTGGATTGGTCACGGAAAATCTGTCCACGGCTAATATT : 30999 60 : ProIleAlaPheAlaLeuValLysGlnIleValLeuArgTyrTyrLysLys{A} >>>> : 77 ||| ! ! !|||:!!:!!|||! !|||:!! ! !!:!!:!!!:! ! {|} ProGlyIleAsnAlaMetMetLysLeuIleIleAlaTrpHisHisArgAsp{A}++ 31000 : CCCGGCATAAACGCCATGATGAAACTGATTATCGCCTGGCATCACAGAGAT{G}gt.... : 31056 78 : Target Intron 1 >>>> {la}LeuThrLeuLeuLeuSerGlnMetPheAspAsp : 88 67 bp {||}.!!! !! !:!!:!!!.!....!.!:!|||||| ++{la}PheLysProValIleLysSerPheTyrAspAsp 31057 : .....................ag{ct}tTCAAGCCCGTTATAAAATCCTTCTACGACGAT : 31153 89 : TrpAsnGluProIleAlaAsnGlnAspArgGlnThrMetLeuLysAsnAlaLysIleSer : 108 |||!!. !!! .!....::::::::::::||||||||||||!..||||||.!!:!! TrpLysThrSerArgThrLysGluGluLysGluThrMetLeuLysArgAlaLysPheAla 31154 : TGGAAAACCTCAAGGACcaaggaggagaaggagacCATGTTGAAGAGAGCCAAATTTGCG : 31213 109 : ArgMetIleSerIleValCysSerThrLeuThrTyrLeuMetLeuPheAlaPheIleSer : 128 !:!...||||||||| !||||||..!||||||! !|||:!! !!.!!:!:!!||| LysGlnIleSerIleTrpCysSerValLeuThrLeuThrMetValThrValTyrLeuSer 31214 : AAACAAATTTCCATCTGGTGCTCAGTATTAACCTTGACCATGGTCACTGTTTATCTAAGT : 31273 129 : LeuGlnIleTrp<-><->SerAsnMetGlnSerAlaSerGluAlaAspLeuGlyGlyLeu : 146 |||!:! ||| ! !.!.:!:.!.!!!|||!:!:!! !.!. ! !! !||| LeuArgAlaTrpIleIleTyrGlnLeuAspArgAlaAsnGlnLysGlnAspArgLeuLeu 31274 : CTTCGAGCGTGGATCATCTACCAGCTTGATAGGGCAAACCAGAAACAGGATCGTCTGCTC : 31333 147 : LeuHisProAlaThrPheProTyrAspIleSerLysSerProAsnPheGluIleThrTrp : 166 |||:!!|||!.! !||||||!:!|||||| !! !! ! ! .!. ! ||| LeuTyrProGlyTyrPheProPheAspIleArgProIleGlyValLeuLeuSerThrAsn 31334 : CTGTACCCTGGCTATTTTCCCTTCGATATTCGTCCAATAGGGGTACTACTGTCGACCAAT : 31393 167 : LeuGlyGlnPheMetGlyThrValLeuThrAlaIleCysTyrSerCysPheAspThrPhe : 186 !!!|||||| ! :!:!.!.!! !! !.!!!.!||| !!|||!!! ! ! ||||||||| PheGlyGlnValLeuAlaAlaTyrSerAlaValIleSerTyrThrThrValAspThrPhe 31394 : TTTGGCCAAGTGCTCGCAGCGTATTCCGCTGTTATCAGTTACACCACCGTGGATACATTT : 31453 187 : LeuAlaValLeuValLeuHisLeuCysGlyGlnLeuThrValLeuArgMetAlaLeuGlu : 206 :!!|||:!!|||:!!:!!|||:!!|||||||||!!! !:!!||||||..! !|||..! IleAlaMetLeuIleMetHisIleCysGlyGlnPheGluIleLeuArgGlnLysLeuArg 31454 : ATCGCGATGCTGATAATGCACATATGCGGACAATTTGAGATACTGAGACAGAAATTACGA : 31513 207 : AspLeuAlaAsnThrThrLysLysAspAsnAsnTyrAlaArgPheHisGluArgLeuGly : 226 ||| !:!! ! !|||||| !!..!:! ! !..!.!!!!.:!!..!|||! ! ArgLeuMetAspAspGluLysLysThrArgSerValAspGluIleGlnLysGluLeuVal 31514 : AGGCTGATGGATGACGAGAAGAAGACCAGAAGCGTGGATGAGATTCAGAAGGAGCTGGTT : 31573 227 : PheIleValAsnArgHisAsnLeuLeuSer : 236 !!.|||:!!.!.||||||.!.! !|||!:! LeuIleIleGluArgHisGluHisLeuAsn 31574 : TTGATCATAGAGAGGCATGAGCATCTAAAT : 31605 vulgar: gi|350425706|ref|XP_003494207.1| 0 236 . KQ414804.1 30830 31605 + 282 M 28 84 G 3 0 M 25 75 G 0 3 M 20 60 S 0 1 5 0 2 I 0 63 3 0 2 S 1 2 M 55 165 G 0 6 M 104 312 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 30831 31605 282 + . gene_id 3 ; sequence gi|350425706|ref|XP_003494207.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 30831 31053 . + . KQ414804.1 exonerate:protein2genome:local exon 30831 31053 . + . insertions 3 ; deletions 3 KQ414804.1 exonerate:protein2genome:local splice5 31054 31055 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 31054 31120 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 31119 31120 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 31121 31605 . + . KQ414804.1 exonerate:protein2genome:local exon 31121 31605 . + . insertions 6 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 30831 31605 282 + . alignment_id 3 ; Query gi|350425706|ref|XP_003494207.1| ; Align 30831 1 84 ; Align 30915 32 75 ; Align 30993 57 60 ; Align 31123 78 165 ; Align 31294 133 312 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425706|ref|XP_003494207.1| PREDICTED: odorant receptor 13a-like, partial [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 270 Query range: 311 -> 380 Target range: 39965 -> 40250 312 : SerThrGlyValGlyGlnAlaAlaTyrGluCysAspTrpTyrAspLeuProProLysAsn : 331 |||||||||:!!||||||:!!||||||!!:|||:!!|||||||||||||||||||||:!! SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 332 : AlaIleSerLeuIleIleValIleCysArgAlaLysValSerPheGlnIleThrAlaGly : 351 |||:!!||||||:!!||||||||||||||||||:!!|||||||||||||||||||||||| AlaValSerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGly 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGA : 40083 352 : LysPheSerProPheSerLeuGluLeuPheAsnAlaValLeu{L} >>>> Target I : 366 ||||||||||||||||||||||||||||||||||||||| !{:} 78 LysPheSerProPheSerLeuGluLeuPheAsnAlaValSer{G}+- 40084 : AAATTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTGTGAGT{C}ga............. : 40131 367 : ntron 1 >>>> {ys}ThrSerAlaGlyTyrLeuSerValLeuLeuAlaMetLysAsp : 380 bp {!!}|||||||||||||||||||||||||||||||||||||||||| +-{ln}ThrSerAlaGlyTyrLeuSerValLeuLeuAlaMetLysAsp 40132 : ............aa{AA}ACGTCTGCTGGATATCTTTCCGTGTTGCTAGCTATGAAAGAC : 40248 vulgar: gi|350425706|ref|XP_003494207.1| 311 380 . KQ414804.1 39965 40250 + 270 M 54 162 S 0 1 5 0 2 I 0 74 3 0 2 S 1 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40250 270 + . gene_id 4 ; sequence gi|350425706|ref|XP_003494207.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39966 40128 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40128 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40129 40130 . + . intron_id 1 ; splice_site "GA" KQ414804.1 exonerate:protein2genome:local intron 40129 40206 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40205 40206 . + . intron_id 0 ; splice_site "AA" KQ414804.1 exonerate:protein2genome:local cds 40207 40250 . + . KQ414804.1 exonerate:protein2genome:local exon 40207 40250 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39966 40250 270 + . alignment_id 4 ; Query gi|350425706|ref|XP_003494207.1| ; Align 39966 312 162 ; Align 40209 367 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425706|ref|XP_003494207.1| PREDICTED: odorant receptor 13a-like, partial [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 260 Query range: 270 -> 379 Target range: 51708 -> 52352 271 : SerValAspGlnGluGlnAlaAspValProIleValGlyMetMetPhePheIleIleHis : 290 |||:!!|||:!!||| !! !!!: ! ||| ::::::|||!!.:!:.!!:!! SerIleAspGluGluIleAspGluAsnMetIlePheGlnIleLeuPheLeuLeuPheTyr 51709 : TCAATTGACGAGGAAATAGATGAAAACAtgattttccaaattctctTTTTGCTGTTCTAC : 51766 291 : ValIleTyrThrMetLeuHisLeuPheIleTyrCysTyrIleGlyGluMetLeuLeuGly : 310 |||:!!|||..!||||||!!.||||||:!:|||||||||:!:||||||! !|||! !! ! ValValTyrValMetLeuGlnLeuPheLeuTyrCysTyrValGlyGluArgLeuSerVal 51767 : GTGGTTTACGTGATGCTACAATTATTCTTGTATTGTTACGTGGGTGAAAGGCTTTCCGTT : 51826 311 : Glu >>>> Target Intron 1 >>>> SerThrGlyValGlyGlnAlaAlaTyrG : 321 ||| 60 bp |||..!! !:!!!.!.!.|||||||||! Glu++ ++SerValGluIleAlaAsnAlaAlaTyrA 51827 : GAGgt.........................agAGCGTTGAAATAGCTAACGCGGCATACG : 51919 322 : luCysAspTrpTyrAspLeuProProLysAsnAlaIleSerLeuIleIleValIleCysA : 341 !:! !!!:||||||:!!||| !!||||||||||||! ! !|||:!!|||:!!!!: ! | spSerGluTrpTyrAsnLeuSerProLysAsnAlaLysLeuLeuLeuIleIleMetArgA 51920 : ATTCTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTGCTACTAATTATCATGCGAC : 51979 342 : rgAlaLysValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuP : 361 |||||!:!:!! !!.!.|||||||||||||||!:!|||:!! !!|||!!!||| !|||! rgAlaArgLeuProLeuGlnIleThrAlaGlyArgPheAlaThrPheThrLeuMetLeuT 51980 : GAGCCAGGTTACCTCTACAAATCACTGCAGGTAGATTTGCTACTTTCACTCTGATGCTGT : 52039 362 : heAsnAla >>>> Target Intron 2 >>>> ValLeuLysThrSerAla<-><- : 370 :!::: ! 251 bp :!!||||||||||||!.! yrSerGln++ ++IleLeuLysThrSerValGlyLy 52040 : ATTCACAGgt.........................agATTTTAAAAACCTCGGTGGGAAA : 52320 371 : >GlyTyrLeuSerValLeuLeuAlaMetLys : 379 ||||||:!!|||||||||! !||||||||| sGlyTyrValSerValLeuTyrAlaMetLys 52321 : AGGTTATGTTTCTGTTCTATACGCAATGAAA : 52352 vulgar: gi|350425706|ref|XP_003494207.1| 270 379 . KQ414804.1 51708 52352 + 260 M 41 123 5 0 2 I 0 56 3 0 2 M 52 156 5 0 2 I 0 247 3 0 2 M 6 18 G 0 6 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51709 52352 260 + . gene_id 5 ; sequence gi|350425706|ref|XP_003494207.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51709 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51709 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52047 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52047 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 52048 52049 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 52048 52298 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 52297 52298 . + . intron_id 1 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 52299 52352 . + . KQ414804.1 exonerate:protein2genome:local exon 52299 52352 . + . insertions 6 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51709 52352 260 + . alignment_id 5 ; Query gi|350425706|ref|XP_003494207.1| ; Align 51709 271 123 ; Align 51892 312 156 ; Align 52299 364 18 ; Align 52323 370 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425706|ref|XP_003494207.1| PREDICTED: odorant receptor 13a-like, partial [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 168 Query range: 75 -> 202 Target range: 44679 -> 45045 76 : LysAlaLeuThrLeuLeuLeuSerGlnMetPheAspAspTrpAsnGluProIleAlaAsn : 95 :::||||||! !! !||||||!.! ||| !|||||||||!:! ! ! !!!. GlnAlaLeuLysSerLeuLeuLysCysMetAlaAspAspTrpSerThrValSerLysLys 44680 : caaGCACTGAAATCTCTGCTGAAATGCATGGCCGACGATTGGAGCACAGTATCGAAAAAA : 44737 96 : GlnAspArgGlnThrMetLeuLysAsnAlaLysIleSerArgMetIleSerIleValCys : 115 .!.|||! !.!.|||||| !!!.! !|||!:!|||!!!|||! !! !! !||| ! !! AspAspLeuAspThrMetSerAsnIleAlaArgIleThrArgLysThrIleIleSerSer 44738 : GATGATCTAGACACCATGAGTAACATCGCAAGGATCACCAGAAAGACTATAATAAGCAGC : 44797 116 : SerThrLeuThrTyrLeuMetLeuPheAlaPheIleSerLeuGlnIleTrpSerAsnMet : 135 !!!..!||| !:!!:!!:!!:!!.!!.!!!:!|||! !|||!:!.!! !!!!..! ! ThrValLeuCysHisIleValValIleThrTyrIlePheLeuArgPheLeuThrArgLys 44798 : ACAGTGTTATGTCACATTGTGGTCATCACTTATATATTTCTACGATTCCTCACCAGGAAG : 44857 136 : GlnSerAlaSerGluAlaAspLeuGlyGlyLeuLeuHisProAlaThrPheProTyrAsp : 155 ! |||!.!!!!..! |||||| !! !||| !|||||||||||| TyrSerGlyThrArg---------------LeuLeuPheArgAlaTyrPheProTyrAsp 44858 : TACAGCGGCACCAGA---------------CTACTCTTCCGTGCTTATTTCCCTTACGAC : 44902 156 : IleSerLysSerProAsnPheGluIleThrTrpLeuGlyGlnPheMetGlyThrValLeu : 175 ! !..! |||||||||!:!|||.!!||| !:!!!.!|||.!!!!:!.!.!! !!! ! SerAspValSerProAsnTyrGluPheThrValIleAlaGlnIleIleAlaAlaPheTyr 44903 : AGCGATGTCAGTCCAAATTACGAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTAT : 44962 176 : ThrAlaIleCysTyrSerCysPheAspThrPheLeuAlaValLeuValLeuHisLeuCys : 195 .!!|||! ! |||!!!..! !!|||||||||:!!!.!:!!|||:!!||||||:!!||| AlaAlaThrThrTyrThrAlaValAspThrPheIleValMetLeuIleLeuHisValCys 44963 : GCAGCCACCACATACACAGCCGTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGT : 45022 196 : GlyGlnLeuThrValLeuArg : 202 |||||||||:!! !|||||| GlyGlnLeuSerAsnLeuArg 45023 : GGACAACTTTCGAATTTGAGA : 45045 vulgar: gi|350425706|ref|XP_003494207.1| 75 202 . KQ414804.1 44679 45045 + 168 M 65 195 G 5 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44680 45045 168 + . gene_id 6 ; sequence gi|350425706|ref|XP_003494207.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44680 45045 . + . KQ414804.1 exonerate:protein2genome:local exon 44680 45045 . + . insertions 0 ; deletions 5 KQ414804.1 exonerate:protein2genome:local similarity 44680 45045 168 + . alignment_id 6 ; Query gi|350425706|ref|XP_003494207.1| ; Align 44680 76 195 ; Align 44875 146 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr179P Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 269 Query range: 213 -> 390 Target range: 486405 -> 487271 214 : AsnTyrArgIleSerHisThrPheValAlaAsnIleLeuUnkValSerSerValGluA : 233 !:!|||||||||..!|||||||||||||||||||||! ! :!!||| !!!.!|||| SerTyrArgIleAspHisThrPheValAlaAsnIleProGlyLeuSerProAlaGluA 486406 : AGCTATCGTATAGATCACACGTTTGTTGCAAACATACCAGGACTTTCTCCTGCGGAAA : 486463 234 : rgAsnIleIleIleArgLysLysValPheIleTyrThrAsnCysPhePhePheCysUn : 252 ||!..:!!:!!|||!.!!:!|||:!! !! !..!|||! ! ! rgArgValLeuIleHisArgLysIleValSerLeuValAsnLeuHisLysArgValLy 486464 : GGAGAGTTCTAATTCACAGAAAAATAGTCTCGCTCGTGAATTTGCACAAAAGAGTCAA : 486520 253 : kSerTyrIleAsnSerPheGlnGluAsnIleIleMetSerTyrAsnPheLeuMetLeu : 271 ..!! :!!::!!!!!:!|||! !! !:!!:!!:!:!!!! .!. ::: sGluLeuValSerCysTyrGlnValIleValLeuLeuThrLeuGlnGlnAsnAsnIle 486521 : GGAGTTAGTATCCTGTTATCAAGTAATTGTTCTTTTAACCTTACAACAgaataatatt : 486577 272 : PheGlyLeuIleAlaPheAsnIleSerMetPhe{G} >>>> Target Intron 1 : 283 ......:::||||||::! ! !! {:} 191 bp ProAsnPheValAlaPheSerTyrProHisArg{L}-+ 486578 : ccaaatttcgttGCTTTTTCCTATCCACACAGA{A}at.................... : 486616 284 : >>>> {lu}IleAlaLysSerIleThrPheLysThrAspThrAsnGluLeuIleSe : 299 {!!}:!!!.!|||:!!:!!||| !..! !.!. !:!!|||::::::.. +-{ys}LeuValLysAlaValThrLysSerLysGlnLeuAspGluMetLeuGl 486617 : .....at{AG}CTCGTCAAAGCAGTTACGAAGAGTAAACAGCTGGACgaaatgttgga : 486852 300 : rSerLeuPhePheValIleCysPheThrIleTyrGlyPheIleProAsnHisPheAla : 318 . |||||||||!.! ! !!.!!! ! !|||! !|||:!! !!|||:!!|||||| uPheLeuPhePheAlaCysGlyIleIleCysTyrGluPheValAlaAsnTyrPheAla 486853 : atttttgttcttCGCGTGTGGCATCATTTGCTACGAATTCGTTGCTAATTATTTTGca : 486909 319 : GlnGluIleIleAsnHisSerPheAsnIlePheIleAsp{Al} >>>> Target I : 332 |||:::|||||||||||||||! !:!!||||||:!: !!{||} 76 GlnLysIleIleAsnHisSerSerHisIlePheValHis{Al}++ 486910 : cagaaaataataaatcacaGTTCTCACATTTTCGTGCAT{GC}gt............. : 486955 333 : ntron 2 >>>> {a}TyrAsnThrGluTrpTyrGluLeuProMetIleGluGlnLy : 346 bp {|}||||||:!!|||||||||..!:!!|||:!: |||||||| ++{a}TyrAsnSerGluTrpTyrArgIleProValAlaGluGlnLy 486956 : ............ag{G}TACAATTCAGAATGGTACAGAATCCCTGTAGCGGAacaaaa : 487069 347 : sLeuIleLeuPheIleThrGlnAsnAsnLeuLysAsnLeuAsnPheValLeuLeuGly : 365 |::::::|||.!!:!:! !||||||!:!||||||:!! !! .!!:!!||| !||| sValLeuLeuLeuLeuMetGlnAsnSerLeuLysAspAspMetIleLeuLeuGlyGly 487070 : agtattattacTCCTGATGCAAAATAGTTTAAAAGATGATATGATCCTACTTGGCGGA : 487126 366 : SerMetValAlaSerTyrProValProGlnGln >>>> Target Intron 3 >> : 377 ! !!!: !||||||!:!! !! ! !..!! ! 68 bp IleIleProAlaSerPheGlnGlyPheSerLeu++ 487127 : ATTATTCCTGCATCTTTCCAGGGATTTTCACTGgt....................... : 487164 378 : >> IleLeuArgThrAlaPheSerTyrPheMetValIleTyrSer : 390 !!::!!||||||:!!||||||||||||||||||:!!|||||| ++MetIleArgThrSerPheSerTyrPheMetValLeuTyrSer 487165 : ..agATGATTCGAACATCCTTCTCGTATTTCATGGTACTTTATTCT : 487271 vulgar: AfOr179P 213 390 . KQ414815.1 486405 487271 + 269 M 69 207 S 0 1 5 0 2 I 0 187 3 0 2 S 1 2 M 48 144 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 44 132 5 0 2 I 0 64 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 486406 487271 269 + . gene_id 1 ; sequence AfOr179P ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 486406 486613 . + . KQ414815.1 exonerate:protein2genome:local exon 486406 486613 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 486614 486615 . + . intron_id 1 ; splice_site "AT" KQ414815.1 exonerate:protein2genome:local intron 486614 486804 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 486803 486804 . + . intron_id 0 ; splice_site "AT" KQ414815.1 exonerate:protein2genome:local cds 486805 486952 . + . KQ414815.1 exonerate:protein2genome:local exon 486805 486952 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 486953 486954 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 486953 487028 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 487027 487028 . + . intron_id 1 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 487029 487161 . + . KQ414815.1 exonerate:protein2genome:local exon 487029 487161 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 487162 487163 . + . intron_id 3 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 487162 487229 . + . intron_id 3 KQ414815.1 exonerate:protein2genome:local splice3 487228 487229 . + . intron_id 2 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 487230 487271 . + . KQ414815.1 exonerate:protein2genome:local exon 487230 487271 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 486406 487271 269 + . alignment_id 1 ; Query AfOr179P ; Align 486406 214 207 ; Align 486807 284 144 ; Align 487030 333 132 ; Align 487230 377 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr179P Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 87 -> 212 Target range: 447775 -> 448295 88 : AspIleLysValLeuPheAspGluIleLysLysAspTrpAsnSerLeu{L} >>>> : 104 .!.:!!|||:!!||||||!!: ! :!!|||:::|||||||||..! { } GlnLeuLysMetLeuPheGluTyrValLysArgAspTrpAsnAspUnk{U}-- 447776 : CAGCTCAAGATGTTGTTCGAGTATGTTAAGCGTGACTGGAATGATGNN{N}nn..... : 447827 105 : Target Intron 1 >>>> {ys}IleIleGluGluLeuArgIleIleHisGluTy : 115 145 bp { }!::||| ...... :::::: +-{nk}MetIlePheArgPheIleAlaLeuAsnPheAs 447828 : ....................at{GC}Atgattttcagatttattgctttaaatttcaa : 448002 116 : rSerLysThrIleLysGlyIleAsnArgIlePheHisUnkUnkLeuLeuProLeuGln : 134 ::: ||| ||| ||| !||| !!||| nAsnPheIleIlePheLeuIlePheThrIleSerValValPheAlaLeuSerLeuIle 448003 : caattttattatctttctcattttcacaatttcagtGGTGTTTGCCTTGTCTTTAATT : 448059 135 : LeuLeuPhePheLeuSerIlePheGlyAsnAsnIleAspIleLeuIleLeuLeuAsnH : 154 !!!! !!!.:!!..!.!! ! ! !::: :::|||||||||!!:! !:!!||| SerPheThrLeuValGluPheValValHisPheLeuAspIleLeuMetProMetAsnV 448060 : AGCTTTACCTTGGTTGAGTTCGTGGTAcattttctcgatattttaATGCCAATGAACG : 448119 155 : isIleArgProGlnThrValProIleIleIleAspTyrPheValAsnGlnGlnArgPh : 173 !! !! !!!. !:!!|||.!!:!!|||.!.! !||| !:!!|||.!.!:!|| alSerThrArgHisGluLeuProPheLeuIleGlnCysPheCysAspGlnAspLysPh 448120 : TATCTACACGGCACGAGCTACCCTTCCTAATTCAATGTTTCTGTGATCAAGATAAATT : 448176 174 : ePheTyrPhePheGlyIleHisLeuAsnLeuIleThrSerPheGlyGlyLeuGlyIle : 192 ||||:!!!:!.!. !:!! !|||! !:!!:!!|||! !!!.|||||| !! !:!! ePheHisTyrIleLeuValPheLeuIleValLeuThrIleLeuGlyGlySerValVal 448177 : CTTCCACTATATATTAGTTTTCTTGATCGTTCTCACTATTTTGGGTGGAAGTGTGGTA : 448233 193 : IleAlaThrGluThrIleSerMetAlaThrMetGlnHisLeuCysGlyLeuLeuLysI : 212 :!!|||||| !|||! !! !:!! ! !! ||||||! !|||||||||!!!|||| LeuAlaThrThrThrThrTyrLeuIlePheSerGlnHisCysCysGlyLeuPheLysI 448234 : TTAGCCACTACAACGACTTACTTGATATTCAGTCAACATTGTTGTGGATTGTTCAAAA : 448293 213 : le : 212 || le 448294 : TT : 448295 vulgar: AfOr179P 87 212 . KQ414815.1 447775 448295 + 126 M 16 48 S 0 1 5 0 2 I 0 141 3 0 2 S 1 2 M 108 324 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 447776 448295 126 + . gene_id 2 ; sequence AfOr179P ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 447776 447824 . + . KQ414815.1 exonerate:protein2genome:local exon 447776 447824 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 447825 447826 . + . intron_id 1 ; splice_site "NN" KQ414815.1 exonerate:protein2genome:local intron 447825 447969 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 447968 447969 . + . intron_id 0 ; splice_site "AT" KQ414815.1 exonerate:protein2genome:local cds 447970 448295 . + . KQ414815.1 exonerate:protein2genome:local exon 447970 448295 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 447776 448295 126 + . alignment_id 2 ; Query AfOr179P ; Align 447776 88 48 ; Align 447972 105 324 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr179P Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 0 -> 50 Target range: 447014 -> 447164 1 : MetAspPheGluGlyAsnGlnTyrTyrAsnIleAsnArgIleLeuMetIleCysIleG : 20 ||||||||| ||| !!:!!||||||!:!:!!|||!:! |||:!!! ! :!!| MetAspPheLeuGlyTyrGluTyrTyrSerLeuAsnGlnGlnLeuLeuThrLeuValG 447015 : ATGGACTTCCTCGGGTACGAGTACTATAGCCTCAATCAACAGCTTTTGACGTTGGTCG : 447072 21 : lyLeuTrpProTyrGluArgThrIleTyrSerLysLeuLeuAsnIlePheIlePheLe : 39 ||||||||||||||:!!||| !! ! !!! |||! !|||! !!:!!!:.!.!! lyLeuTrpProTyrLysArgTyrLysLeuThrPheLeuTyrAsnThrTyrMetLeuPh 447073 : GACTGTGGCCGTACAAGAGGTACAAGTTGACATTCCTTTACAATACCTACATGCTGTT : 447129 40 : uLeuLeuSerThrGlyIlePheIleGlnAlaMet : 50 !!!!!!!! !|||!.!.!!|||:!!|||!.!:!: ePhePheIleThrAlaPhePheLeuGlnValLeu 447130 : CTTCTTCATCACCGCTTTCTTTCTTCAGGTACTT : 447164 vulgar: AfOr179P 0 50 . KQ414815.1 447014 447164 + 111 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 447015 447164 111 + . gene_id 3 ; sequence AfOr179P ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 447015 447164 . + . KQ414815.1 exonerate:protein2genome:local exon 447015 447164 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 447015 447164 111 + . alignment_id 3 ; Query AfOr179P ; Align 447015 1 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr179P Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 145 -> 212 Target range: 475569 -> 475770 146 : IleAspIleLeuIleLeuLeuAsnHisIleArgProGlnThrValProIleIleIleA : 165 :!!||| !|||:!!! !||||||.!. !||||||... ! !! !||| |||: LeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleArgIleG 475570 : CTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaatag : 475627 166 : spTyrPheValAsnGlnGlnArgPhePheTyrPhePheGlyIleHisLeuAsnLeuIl : 184 ::||||||:::|||:!!|||!:!!:!||||||.!. !! !|||:!!! !!.!:!!! luTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrValTh 475628 : aatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGTAAC : 475684 185 : eThrSerPheGlyGlyLeuGlyIleIleAlaThrGluThrIleSerMetAlaThrMet : 203 ! ! !.!. !||| ! ! !:!!|||||||||.!!|||! !! ! !:!! rIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrpLeu 475685 : GATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGGTTG : 475741 204 : GlnHisLeuCysGlyLeuLeuLysIle : 212 ||||||! ! ...|||...:::||| GlnHisCysIleSerLeuPheGluIle 475742 : CAACATTGCATaagtttatttgaaatt : 475770 vulgar: AfOr179P 145 212 . KQ414815.1 475569 475770 + 108 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475570 475770 108 + . gene_id 4 ; sequence AfOr179P ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475570 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475570 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475570 475770 108 + . alignment_id 4 ; Query AfOr179P ; Align 475570 146 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr174 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 527 Query range: 46 -> 317 Target range: 484510 -> 486947 47 : IleGlnIleMetSerPheIleThrLeuLysMetAspMetSerLeuIleLeuThrLeuL : 66 .!!|||:!!|||!!!|||||||||:!!||||||:!! !!.!! !.!!|||! ! !| PheGlnLeuMetThrPheIleThrIleLysMetAsnAlaLysGlnPheLeuLysThrL 484511 : TTTCAGTTAATGACATTCATCACGATAAAAATGAACGCGAAACAATTTCTGAAAACGC : 484568 67 : euSerPheThrSerCysThrCysIlePheIleThrLysTyrPheIlePheLeuPheTy : 85 |||||!:!! !:!! !:!!! ! !|||:!!:!!||||||.!!! ||||||.!!:! euSerTyrIleAlaIleSerPheSerPheValSerLysTyrLeuThrPheLeuIleHi 484569 : TTTCTTACATTGCAATCTCGTTCTCCTTCGTCTCCAAGTACCTCACGTTTCTCATTCA : 484625 86 : rIleLysAspVal >>>> Target Intron 1 >>>> LysAsnIleGluGluL : 95 !.!! |||||| 184 bp ! !|||! !||||||| sPhe---AspVal++ -+ThrAsnLysGluGluL 484626 : CTTC---GACGTTgt.........................tgACGAATAAAGAGGAGC : 484836 96 : euArgIleIleHisGluTyrSerLysThrThrLysGlyIleThrIleCysPheIle{I : 114 |||||||||||||||||||||||!....!|||!:!! !:!!|||||||||||| !{: euArgIleIleHisGluTyrSerSerValThrArgValLeuThrIleCysPheSer{L 484837 : TTCGGATCATTCACGAATATTCCAGTGTCACGAGAGTTCTAACCATATGTTTCTCA{T : 484893 115 : } >>>> Target Intron 2 >>>> {le}IleIleValProLeuGlnLeuIle : 122 } 776 bp {!!}||||||! !|||! ! !|||:!: }++ ++{eu}IleIleGlyProSerLeuLeuVal 484894 : }gt.........................ag{TA}ATTATCGGTCCATCGTTACTTGTG : 485693 123 : PhePheLeuSerIlePheGlyAsnAsnIleLeuAspIleLeuIleProLeuAsnHisT : 142 .!..!!|||.!!||||||..!|||!:!|||||||||||||||||||||||||||:!!| LeuIleLeuGlyIlePheAsnAsnSerIleLeuAspIleLeuIleProLeuAsnTyrT 485694 : CTGATTCTTGGTATATTTAACAACAGTATTCTGGACATTTTGATTCCTTTGAATTACA : 485753 143 : hrArgProArgThrValProIleValIleAspTyrPheValAspGlnGlnLysPhePh : 161 ||||||||||||||:!!|||||| ! !!::!!||||||||||||||||||!:!|| hrArgProArgThrIleProIleAsnSerGluHisPheValAspGlnGlnLysTyrPh 485754 : CTCGTCCGCGGACGATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTT : 485810 162 : eAsnPhePheGlyMetHisLeuAsnLeuIleThrSerPheGlyGlyLeuGlyIleIle : 180 | !! !.!!!.! |||:!! !|||.!!..!! !.!!|||!.!:!!! !:!!:!! eTyrProIleAlaAlaHisValValLeuPheValIleIleGlyAlaIleValLeuLeu 485811 : CTACCCTATTGCAGCACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTC : 485867 181 : AlaThrGluThrIleSerMetAlaMetMetGlnHisLeuCysGlyLeuLeuLysIleS : 200 ::!|||||| ::: ||||||!!:!!:|||||| !|||||||||! !! !||| SerThrGluIleLeuIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIleV 485868 : AGCaccgaaatattaattatggCGATAATACAGCACACCTGTGGTTTGTATACAATCG : 485927 201 : er{Se} >>>> Target Intron 3 >>>> {r}PheArgIleSerHisThrPh : 208 !{.!} 476 bp {!}!:!||||||..!|||||||| al{Gl}++ ++{y}TyrArgIleAspHisThrPh 485928 : TT{GG}gt.........................ag{C}TATCGTATAGATCACACGTT : 486427 209 : eValAlaAsnIleProArgValSerPheThrGluArgAsnIleValIleArgArgLys : 227 |||||||||||||||| !!:!!||| !.!!||||||!..:!!:!!|||!.!|||||| eValAlaAsnIleProGlyLeuSerProAlaGluArgArgValLeuIleHisArgLys 486428 : TGTTGCAAACATACCAGGACTTTCTCCTGCGGAAAGGAGAGTTCTAATTCACAGAAAA : 486484 228 : ValIleSerIleValAsnLeuHisValLysIleLysAsnTyrIleAsnTrpIleGlnG : 247 :!!:!!|||:!!|||||||||||| !!:!:!!|||.!.! :!!::!!! !|||! IleValSerLeuValAsnLeuHisLysArgValLysGluLeuValSerCysTyrGlnV 486485 : ATAGTCTCGCTCGTGAATTTGCACAAAAGAGTCAAGGAGTTAGTATCCTGTTATCAAG : 486544 248 : luLysIleIleIleSerTyrAspPheLeuIleLeuPheGlyLeuValValPheSerIl : 266 !! :!!:!!:!!!!!! .!. ::: ......|||!.!|||||| alIleValLeuLeuThrLeuGlnGlnAsnAsnIleProAsnPheValAlaPheSerTy 486545 : TAATTGTTCTTTTAACCTTACAACAgaataatattccaaatttcgttGCTTTTTCCTA : 486601 267 : eSerMetPhe{G} >>>> Target Intron 4 >>>> {lu}PheAlaArgSer : 274 ! !! {:} 191 bp {!!}.!!!.!!:!:!! rProHisArg{L}-+ +-{ys}LeuValLysAla 486602 : TCCACACAGA{A}at.........................at{AG}CTCGTCAAAGCA : 486816 275 : ValThrSerLysThrAspAlaAsnGluLeuIleSerSerLeuPheTyrIleIleCysI : 294 ||||||!.!!..! !.!. !:!!|||::::::... ||||||::! ! !!| ValThrLysSerLysGlnLeuAspGluMetLeuGluPheLeuPhePheAlaCysGlyI 486817 : GTTACGAAGAGTAAACAGCTGGACgaaatgttggaatttttgttcttCGCGTGTGGCA : 486876 295 : leThrIleTyrGlyPheValProAsnHisPheAlaGlnGluIleIleAsnHisSerSe : 313 ||! ! !|||! !|||||| !!|||:!!|||||||||:::||||||||||||||||| leIleCysTyrGluPheValAlaAsnTyrPheAlaGlnLysIleIleAsnHisSerSe 486877 : TCATTTGCTACGAATTCGTTGCTAATTATTTTGcacagaaaataataaatcacaGTTC : 486933 314 : rAsnIlePheMet : 317 |:!!||||||:!! rHisIlePheVal 486934 : TCACATTTTCGTG : 486947 vulgar: AfOr174 46 317 . KQ414815.1 484510 486947 + 527 M 40 120 G 1 0 M 2 6 5 0 2 I 0 180 3 0 2 M 24 72 S 0 1 5 0 2 I 0 772 3 0 2 S 1 2 M 86 258 S 0 2 5 0 2 I 0 472 3 0 2 S 1 1 M 68 204 S 0 1 5 0 2 I 0 187 3 0 2 S 1 2 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 484511 486947 527 + . gene_id 1 ; sequence AfOr174 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 484511 484636 . + . KQ414815.1 exonerate:protein2genome:local exon 484511 484636 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local splice5 484637 484638 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 484637 484820 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 484819 484820 . + . intron_id 0 ; splice_site "TG" KQ414815.1 exonerate:protein2genome:local cds 484821 484893 . + . KQ414815.1 exonerate:protein2genome:local exon 484821 484893 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 484894 484895 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 484894 485669 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 485668 485669 . + . intron_id 1 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 485670 485931 . + . KQ414815.1 exonerate:protein2genome:local exon 485670 485931 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 485932 485933 . + . intron_id 3 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 485932 486407 . + . intron_id 3 KQ414815.1 exonerate:protein2genome:local splice3 486406 486407 . + . intron_id 2 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 486408 486613 . + . KQ414815.1 exonerate:protein2genome:local exon 486408 486613 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 486614 486615 . + . intron_id 4 ; splice_site "AT" KQ414815.1 exonerate:protein2genome:local intron 486614 486804 . + . intron_id 4 KQ414815.1 exonerate:protein2genome:local splice3 486803 486804 . + . intron_id 3 ; splice_site "AT" KQ414815.1 exonerate:protein2genome:local cds 486805 486947 . + . KQ414815.1 exonerate:protein2genome:local exon 486805 486947 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 484511 486947 527 + . alignment_id 1 ; Query AfOr174 ; Align 484511 47 120 ; Align 484631 88 6 ; Align 484821 90 72 ; Align 485672 115 258 ; Align 486409 202 204 ; Align 486807 271 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr174 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 109 -> 200 Target range: 448022 -> 448298 110 : IleCysPheIleIleIleIleValProLeuGlnLeuIlePhePheLeuSerIle<->P : 128 ||| ||| ::::!: !! !!|||...|||||| !||| !! !:!! | IlePheThrIleSerValValPheAlaLeuSerLeuIleSerPheThrLeuValGluP 448023 : attttcacaatttcagtGGTGTTTGCCTTGTCTTTAATTAGCTTTACCTTGGTTGAGT : 448080 129 : heGlyAsnAsnIleLeuAspIleLeuIleProLeuAsnHisThrArgProArgThrVa : 147 ||! ! :::...||||||||||||!!:|||:!!||| :!!! !! !!.! !:! heValValHisPheLeuAspIleLeuMetProMetAsnValSerThrArgHisGluLe 448081 : TCGTGGTAcattttctcgatattttaATGCCAATGAACGTATCTACACGGCACGAGCT : 448137 148 : lProIleValIleAspTyrPheValAspGlnGlnLysPhePheAsnPhePheGlyMet : 166 !|||.!!:!!|||.!.! !||| !||||||.!.|||||||||:!!!:!.!. !:!: uProPheLeuIleGlnCysPheCysAspGlnAspLysPhePheHisTyrIleLeuVal 448138 : ACCCTTCCTAATTCAATGTTTCTGTGATCAAGATAAATTCTTCCACTATATATTAGTT : 448194 167 : HisLeuAsnLeuIleThrSerPheGlyGlyLeuGlyIleIleAlaThrGluThrIleS : 186 !|||! !:!!:!!|||! !!!.|||||| !! !:!!:!!|||||| !|||! !! PheLeuIleValLeuThrIleLeuGlyGlySerValValLeuAlaThrThrThrThrT 448195 : TTCTTGATCGTTCTCACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAACGACTT : 448254 187 : erMetAlaMetMetGlnHisLeuCysGlyLeuLeuLysIleSer : 200 !:!! !.!.! ||||||! !|||||||||!!!||||||:!! yrLeuIlePheSerGlnHisCysCysGlyLeuPheLysIleAla 448255 : ACTTGATATTCAGTCAACATTGTTGTGGATTGTTCAAAATTGCA : 448298 vulgar: AfOr174 109 200 . KQ414815.1 448022 448298 + 147 M 18 54 G 0 3 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448023 448298 147 + . gene_id 2 ; sequence AfOr174 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448023 448298 . + . KQ414815.1 exonerate:protein2genome:local exon 448023 448298 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448023 448298 147 + . alignment_id 2 ; Query AfOr174 ; Align 448023 110 54 ; Align 448080 128 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr174 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 114 -> 199 Target range: 481980 -> 482235 115 : IleIleValProLeuGlnLeuIlePhePheLeuSerIlePheGlyAsnAsnIleLeuA : 134 :!!||| !|||! ! !||||||.!..!.|||!!! !.!...!!:! !:!!|||| LeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuA 481981 : TTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAG : 482038 135 : spIleLeuIleProLeuAsnHisThrArgProArgThrValProIleValIleAspTy : 153 ||:!!:!!:!!|||||||||.!.|||||| !!!.! ! !!|||:!! !!!:!!:|| spValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMetGluTy 482039 : ACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTA : 482095 154 : rPheValAspGlnGlnLysPhePheAsnPhePheGlyMetHisLeuAsnLeuIleThr : 172 ||||:!!||||||||||||!:!! !|||.!! !.!.|||! ! !!! ! ! rPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPhe 482096 : CTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTT : 482152 173 : SerPheGlyGlyLeuGlyIleIleAlaThrGluThrIleSerMetAlaMetMetGlnH : 192 ! ! ! !!.! ! !|||:!!!.!! !||||||:!:! !:!: ! !:!::!!| LeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluH 482153 : CTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAAC : 482212 193 : isLeuCysGlyLeuLeuLysIle : 199 || !....!!|||!!!! :!! isAlaAlaSerLeuPheThrLeu 482213 : ACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: AfOr174 114 199 . KQ414815.1 481980 482235 + 127 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481981 482235 127 + . gene_id 3 ; sequence AfOr174 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481981 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481981 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481981 482235 127 + . alignment_id 3 ; Query AfOr174 ; Align 481981 115 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr174 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 131 -> 200 Target range: 457207 -> 457414 132 : IleLeuAspIleLeuIleProLeuAsnHisThrArgProArgThrValProIleValI : 151 :!!|||||||||:!!:!!|||||||||.!.:!!|||||| !! !:!! !:!!..! LeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrLeuThrA 457208 : TTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAG : 457265 152 : leAspTyrPheValAspGlnGlnLysPhePheAsnPhePheGlyMetHisLeuAsnLe : 170 !!:||||||||||||..!:!!|||!:!.!.:!!!:!.!! ! !|||:!!! ! laGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleTh 457266 : CGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCAC : 457322 171 : uIleThrSerPheGlyGlyLeuGlyIleIleAlaThrGluThrIleSerMetAlaMet : 189 ! ! ! !.!!!.!!.! ! !:!!! !|||!.!|||:!!:!! !!!:.!!! rCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsn 457323 : GTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAAC : 457379 190 : MetGlnHisLeuCysGlyLeuLeuLysIleSer : 200 :!:! !|||:!!|||||||||!!!|||:!!!!! ValLeuHisValCysGlyLeuPheLysLeuThr 457380 : GTACTGCACGTTTGTGGATTGTTCAAGCTTACT : 457414 vulgar: AfOr174 131 200 . KQ414815.1 457207 457414 + 122 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457208 457414 122 + . gene_id 4 ; sequence AfOr174 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457208 457414 . + . KQ414815.1 exonerate:protein2genome:local exon 457208 457414 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457208 457414 122 + . alignment_id 4 ; Query AfOr174 ; Align 457208 132 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr174 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 0 -> 50 Target range: 447014 -> 447164 1 : MetAspPheGluGlySerGlnTyrTyrAsnIleAsnArgIleLeuMetIleCysValG : 20 ||||||||| |||! !:!!||||||!:!:!!|||!:! |||:!!! ! |||| MetAspPheLeuGlyTyrGluTyrTyrSerLeuAsnGlnGlnLeuLeuThrLeuValG 447015 : ATGGACTTCCTCGGGTACGAGTACTATAGCCTCAATCAACAGCTTTTGACGTTGGTCG : 447072 21 : lyLeuTrpProTyrGluArgThrIleTyrSerLysLeuLeuAsnIlePheIlePheLe : 39 ||||||||||||||:!!||| !! ! !!! |||! !|||! !!:!!!:.!.!! lyLeuTrpProTyrLysArgTyrLysLeuThrPheLeuTyrAsnThrTyrMetLeuPh 447073 : GACTGTGGCCGTACAAGAGGTACAAGTTGACATTCCTTTACAATACCTACATGCTGTT : 447129 40 : uLeuLeuThrThrAlaIlePheIleGlnIleMet : 50 !!!!!!!! !||||||.!!|||:!!|||:!!:!: ePhePheIleThrAlaPhePheLeuGlnValLeu 447130 : CTTCTTCATCACCGCTTTCTTTCTTCAGGTACTT : 447164 vulgar: AfOr174 0 50 . KQ414815.1 447014 447164 + 120 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 447015 447164 120 + . gene_id 5 ; sequence AfOr174 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 447015 447164 . + . KQ414815.1 exonerate:protein2genome:local exon 447015 447164 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 447015 447164 120 + . alignment_id 5 ; Query AfOr174 ; Align 447015 1 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr174 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 131 -> 206 Target range: 471606 -> 471831 132 : IleLeuAspIleLeuIleProLeuAsnHisThrArgProArgThrValProIleValI : 151 ||||||||||||:!!|||||||||||| :!!||||||||| ! !!|||.!!..!. IleLeuAspIleIleIleProLeuAsnThrSerArgProArgTyrPheProPheThrP 471607 : ATTCTCGATATTATAATACCTCTGAACACGTCACGTCCACGTTACTTTCCATTTACGT : 471664 152 : leAspTyrPheValAspGlnGlnLysPhePheAsnPhePheGlyMetHisLeuAsnLe : 170 !!|||!:!.!! !:!!|||:!!:!!!:!||| ! .!! !!!: !! !..!:! heAspPheIleProAsnGlnGluGluTyrPhe***ProIleThrIlePheSerGlyIl 471665 : TCGATTTCATTCCCAATCAAGAGGAATACTTCTAACCGATTACTATCTTTTCTGGCAT : 471721 171 : uIleThrSerPheGlyGlyLeuGlyIleIleAlaThrGluThrIleSerMetAlaMet : 189 !:!: !! !! !||| ! !!.!!!:|||::!!:!||| !:!: !||| !! eLeuCysIleCysGlyLeuAlaAlaMetIleSerSerGluGlyLeuLeuMetMetAsn 471722 : ATTGTGCATTTGTGGATTAGCAGCAATGATAAGTAGCGAGGGTCTGCTTATGATGAAT : 471778 190 : MetGlnHisLeuCysGlyLeuLeuLysIleSerSerPheArgIleSerHis : 206 :!: !|||:!! !!||||||! !!!.|||:!!!!!! !:!!! !||| ValLeuHisValArgGlyLeuTyrAsnIleAlaThr***ValLeuLeuHis 471779 : GTTTTACACGTACGTGGATTGTATAACATCGCTACGTGAGTACTATTACAT : 471831 vulgar: AfOr174 131 206 . KQ414815.1 471606 471831 + 107 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471607 471831 107 + . gene_id 6 ; sequence AfOr174 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471607 471831 . + . KQ414815.1 exonerate:protein2genome:local exon 471607 471831 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471607 471831 107 + . alignment_id 6 ; Query AfOr174 ; Align 471607 132 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr174 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 0 -> 49 Target range: 470867 -> 471014 1 : MetAspPheGluGlySerGlnTyrTyrAsnIleAsnArgIleLeuMetIleCysValG : 20 |||||||||! |||..!||||||||| :::...... !:!!| MetAspPheAlaGlyGluGlnTyrTyrValTyrValLysPhePheSerSerIleIleG 470868 : ATGGATTTCGCTGGTGAACAGTACTATGTATacgtaaaatttttctcctctaTCATCG : 470925 21 : lyLeuTrpProTyrGluArgThrIleTyrSerLysLeuLeuAsnIlePheIlePheLe : 39 |||||||||||||| !! ! ! ! !.!! !!!!! !|||:::||||||::::: lyLeuTrpProTyrThrThrGlyArgLeuLysThrPheCysAsnMetPheIleTyrIl 470926 : GTCTGTGGCCGTACACAACTGGTCGACTAAAAACATTTTGCaatatgtttatttacat : 470982 40 : uLeuLeuThrThrAlaIlePheIleGlnIle : 49 :|||!!!:!!! !|||.!!.!!||||||:!! eLeuPheSerMetAlaPheLeuIleGlnVal 470983 : aCTATTTTCAATGGCATTTCTTATCCAGGTA : 471014 vulgar: AfOr174 0 49 . KQ414815.1 470867 471014 + 102 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 470868 471014 102 + . gene_id 7 ; sequence AfOr174 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 470868 471014 . + . KQ414815.1 exonerate:protein2genome:local exon 470868 471014 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 470868 471014 102 + . alignment_id 7 ; Query AfOr174 ; Align 470868 1 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr174 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 132 -> 221 Target range: 444613 -> 444877 133 : LeuAspIleLeuIleProLeuAsnHisThrArgProArgThrValProIleValIleA : 152 :!!|||:!:|||:!!|||||||||:!!:!!||||||||| !:!! ! ! !!:!! MetAspLeuLeuValProLeuAsnAsnSerArgProArgTyrLeuGlyTyrPheValI 444614 : ATGGATCTGTTAGTACCTTTGAACAATTCCAGACCTCGTTATCTTGGCTACTTTGTTA : 444671 153 : spTyrPheValAspGlnGlnLysPhePheAsnPhePheGlyMetHisLeuAsnLeuIl : 171 ! ! ! !:!!||| !:!!!:!.!!:!!|||.!. !.!.:!! !!..|||:! leLeuProSerAsnGlnIleGlnTyrIleAspPheMetThrPheTyrGlyThrLeuVa 444672 : TTCTTCCCTCTAATCAAATACAGTATATTGATTTTATGACATTTTATGGGACATTAGT : 444728 172 : eThrSerPheGlyGlyLeuGlyIleIleAlaThrGluThrIleSerMetAlaMetMet : 190 ! !!! ! ! ||| !||| !:!! !..!||||||:!!:!! !! !! lProPheValGlyLeuLeuThrValAlaCysThrGluSerLeuLeuSerIleSerAla 444729 : TCCCTTTGTGGGATTATTAACTGTAGCATGCACGGAATCGCTTCTTAGTATTAGCGCA : 444785 191 : GlnHisLeuCysGlyLeuLeuLysIleSerSerPheArgIleSerHisThrPheValA : 210 ..!:!!||||||.!!|||! !||||||!!!.!!!:! :!!|||!!. !!:!:::. MetTyrLeuCysSerLeuTyrLysIleThrGlyTyr---ValSerGlnTyrTyrIleV 444786 : ATGTATCTGTGCAGTTTATATAAGATTACTGGGTAC---GTATCTCAATACTATatcg : 444842 211 : laAsnIleProArgValSerPheThrGluArgAsn : 221 ........ :::::: ||| |||::: alGlnPheLysLysIlePhePhePhePheArgSer 444843 : tacaatttaaaaaaatttttttcttctttcgttca : 444877 vulgar: AfOr174 132 221 . KQ414815.1 444613 444877 + 100 M 70 210 G 1 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 444614 444877 100 + . gene_id 8 ; sequence AfOr174 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 444614 444877 . + . KQ414815.1 exonerate:protein2genome:local exon 444614 444877 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 444614 444877 100 + . alignment_id 8 ; Query AfOr174 ; Align 444614 133 210 ; Align 444824 204 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427266|ref|XP_003494705.1| PREDICTED: odorant receptor 49a-like [Bombus impatiens] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 144 -> 225 Target range: 481995 -> 482235 145 : MetValLeuPheLeuLeuValProLeuLeuProProMetLeuAspIleValLeuProL : 164 :!!:!!:!!.!.:!!||| !! !:!!! ! ! !:!:||||||:!!:!!:!!|||| ValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValProL 481996 : GTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTCCTC : 482053 165 : euAsnGluThrArgProArgGlnGlnIleLeuAsnValAsnTyrValIlePheAspSe : 183 |||||||||||||| !!!.!||| !:!!::::!!.!.||| !!||| |||.. euAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPheIle---AspGl 482054 : TAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATT---GACCA : 482107 184 : rAsnAsnTyrPhePheTyrValTyrLeuGlnLeuSerTrpThrSerValValValSer : 202 !.!.!!.|||! .!!!:!:!! !!!!!.! !!!!!:::!!! !:!!||||||:!! nGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAla 482108 : GCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCA : 482164 203 : IleIleIleValThrValAspSerLeuLeuMetLeuIleValHisHisAsnSerGlyL : 222 ! ||||||||| !:!!!!:!!!|||:!!:!::!! :!!.!.||| !:!!.!!| ThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerL 482165 : ACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCT : 482224 223 : euPheValVal : 225 |||||..!:!! euPheThrLeu 482225 : TGTTCACCCTT : 482235 vulgar: gi|350427266|ref|XP_003494705.1| 144 225 . KQ414815.1 481995 482235 + 105 M 36 108 G 1 0 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481996 482235 105 + . gene_id 1 ; sequence gi|350427266|ref|XP_003494705.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481996 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481996 482235 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 481996 482235 105 + . alignment_id 1 ; Query gi|350427266|ref|XP_003494705.1| ; Align 481996 145 108 ; Align 482104 182 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427266|ref|XP_003494705.1| PREDICTED: odorant receptor 49a-like [Bombus impatiens] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 145 -> 223 Target range: 457174 -> 457405 146 : ValLeuPheLeuLeuValProLeuLeuProProMetLeuAspIleValLeuProLeuA : 165 :!!:!!.!! ! !:!!! !|||!!!||| !:!:||||||||||||:!!||||||| LeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuA 457175 : CTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGA : 457232 166 : snGluThrArgProArgGlnGlnIleLeuAsnValAsnTyrValIlePheAspSerAs : 184 |||||:!!|||||| !!:!! ! !|||!..!.!.!.||| !!:!! |||! !!! snGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheVal---AspMetLy 457233 : ACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTC---GACATGAA : 457286 185 : nAsnTyrPhePheTyrValTyrLeuGlnLeuSerTrpThrSerValValValSerIle : 203 .!!.|||.!. !|||:!! ! !!!.:!!! ! ! ! !:!!:!!!.!:!!! ! sLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThr 457287 : AAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACC : 457343 204 : IleIleValThrValAspSerLeuLeuMetLeuIleValHisHisAsnSerGlyLeuP : 223 ! :!!..!.!! !!!:|||||||||!!: !! !|||! ||| !!!!||||||| ThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuP 457344 : ACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGT : 457403 224 : he : 223 || he 457404 : TC : 457405 vulgar: gi|350427266|ref|XP_003494705.1| 145 223 . KQ414815.1 457174 457405 + 103 M 35 105 G 1 0 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457175 457405 103 + . gene_id 2 ; sequence gi|350427266|ref|XP_003494705.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457175 457405 . + . KQ414815.1 exonerate:protein2genome:local exon 457175 457405 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457175 457405 103 + . alignment_id 2 ; Query gi|350427266|ref|XP_003494705.1| ; Align 457175 146 105 ; Align 457280 182 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427266|ref|XP_003494705.1| PREDICTED: odorant receptor 49a-like [Bombus impatiens] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 144 -> 225 Target range: 464597 -> 464840 145 : MetValLeuPheLeuLeuValProLeuLeuProProMetLeuAspIleValLeuProL : 164 !!::!!!!!.!!! !|||:!! !:!!|||||| !!!:||||||:!:||| !|||| IleLeuPheIleCysLeuLeuGluValLeuProAspIleLeuAspValValAlaProL 464598 : ATACTGTTCATCTGTTTACTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCC : 464655 165 : euAsnGluThrArgProArgGlnGlnIleLeuAsnValAsnTyrValIlePheAspSe : 183 ||||||||:!!||| !!!.!||| ! :!!:!!!.!!.!.!.!:! !!||| !||||| euAsnGluSerArgSerHisGlnTyrLeuIleThrAlaGluPhePheIleThrAspSe 464656 : TCAATGAATCTCGTTCTCATCAATACTTAATTACCGCGGAATTTTTCATCACTGATAG : 464712 184 : rAsnAsnTyrPhePheTyrValTyrLeuGlnLeuSerTrpThrSerValValValSer : 202 |::: !!!:!.!! ..!! !:!! !..! ||| !:!!:!!! ! ! rSerProAsnTyrIleValThrCysValGlyThrAspIleThrLeuIleMetGlyVal 464713 : TTCGCCGAATTATATCGTAACTTGTGTTGGTACGGATATTACTCTTATCATGGGAGTC : 464769 203 : IleIleIleValThrValAspSerLeuLeuMetLeuIleValHisHisAsnSerGlyL : 222 ! ! !|||:!!.!! !!!:!!!!!! !.!.|||:!::!!!!.|||! !!!!!.!: ThrThrIleIleAlaSerGluThrPheThrPheLeuLeuLeuGlnHisIleCysAlaM 464770 : ACGACAATAATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAA : 464829 223 : euPheValVal : 225 !!||| !:!! etPheLysIle 464830 : TGTTCAAAATC : 464840 vulgar: gi|350427266|ref|XP_003494705.1| 144 225 . KQ414815.1 464597 464840 + 101 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464598 464840 101 + . gene_id 3 ; sequence gi|350427266|ref|XP_003494705.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464598 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464598 464840 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464598 464840 101 + . alignment_id 3 ; Query gi|350427266|ref|XP_003494705.1| ; Align 464598 145 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr174 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 322 -> 379 Target range: 128551 -> 128306 323 : ThrGluTrpTyrGluLeuProValIleGluGlnLysLeuIleLeuPheIleMetGlnA : 342 .!!:!!||||||:!! !|||||| ...||||||::::!!||||||:!!|||!!.! AlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheLeuMetHisA 128551 : GCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCCTCATGCACA : 128494 343 : snAsnLeuLysAsnPheAsnPheValLeuLeuGlySerMetIleAlaSerTyrHisVa : 361 .. !:!!:!! ! !!...!. !||| !..!! !:!: !|||.!! !!.!.:! rgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGlyAsnGluLe 128493 : GATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGGTAACGAGTT : 128437 362 : lTyrValThr >>>> Target Intron 1 >>>> IleLeuHisThrAlaPheS : 371 !|||!.!||| 74 bp :!::!!!!.|||!.!|||| uTyrAlaThr++ ++MetValGlnThrGlyPheS 128436 : GTACGCTACCgt.........................agaTGGTGCAGACTGGTTTCT : 128333 372 : erTyrPheMetValIleTyrSerIle : 379 ||||||||! !|||:!!||||||:!: erTyrPheThrValLeuTyrSerLeu 128332 : CCTACTTTACGGTTCTCTACTCGTTG : 128307 vulgar: AfOr174 322 379 . KQ414817.1 128551 128306 - 101 M 42 126 5 0 2 I 0 70 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128307 128551 101 - . gene_id 1 ; sequence AfOr174 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128551 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128551 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128307 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128307 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128307 128551 101 - . alignment_id 1 ; Query AfOr174 ; Align 128552 323 126 ; Align 128352 365 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr176P Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 156 Query range: 154 -> 238 Target range: 136765 -> 136439 155 : AsnLysIleAspTyrTyrIleLeuMetIlePheLeuAsnIlePheIleIlePheSerL : 174 :!!! !:!:||| ! ! :!!! !:!::!:.!.!!! !:!!.!!.!!|||.!.! !: AspThrValAspSerLysValSerValLeuLeuPheCysValIlePheIleMetIleI 136765 : GATACAGTGGACAGCAAGGTCTCTGTATTGCTGTTCTGCGTTATTTTCATCATGATAA : 136708 175 : euIleIleLeuIleSerThrAspSerIleCysThrThrIleThrTyrHisValCysAl : 193 !! !:!!:!!:!:!!!|||||| !|||! !! !|||:!!|||||||||!.!||||| leAlaValMetLeuThrThrAspLeuIleTyrIleThrLeuThrTyrHisAlaCysAl 136707 : TTGCAGTTATGTTGACCACGGATCTGATTTACATTACTCTTACATATCATGCATGTGC : 136651 194 : aValLeuAspIleThr{Ar} >>>> Target Intron 1 >>>> {g}PheLys : 201 |:!!:!!..!:!!|||{ !} 71 bp {!}.!.:!! aMetIleSerValThr{Gl}++ ++{y}LeuGln 136650 : AATGATAAGTGTAACG{GG}gt.........................ag{A}CTGCAG : 136556 202 : HisLeuPheAspAspLeuArgLysMet<->AsnValAlaHisArgLysTyrLeuLeuA : 220 |||||||||||||||:!!!:!!:!||| |||..!! !!!.!:!!!. !||||||! HisLeuPheAspAspValLysArgMetArgAsnThrGluGlnLysAsnThrLeuLeuH 136555 : CATCTTTTCGACGATGTTAAGAGGATGAGGAACACCGAGCAGAAGAATACTCTGCTTC : 136496 221 : rgAsnArgIleValGlyIleValArgHisHisTrpLysCysIleGluTyrIleAsn : 238 .! |||:!!!.! ! !:!!|||:!!||||||||||||!!::!!!:!:!!::: isValArgValAlaLysAlaIleArgTyrHisTrpLysCysMetLysPheValSer 136495 : ATGTGCGAGTTGCTAAAGCTATTAGATACCATTGGAAATGCATGAAGTTCGTATCA : 136440 vulgar: AfOr176P 154 238 . KQ414817.1 136765 136439 - 156 M 44 132 S 0 2 5 0 2 I 0 67 3 0 2 S 1 1 M 11 33 G 0 3 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 136440 136765 156 - . gene_id 1 ; sequence AfOr176P ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 136632 136765 . - . KQ414817.1 exonerate:protein2genome:local exon 136632 136765 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 136630 136631 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 136561 136631 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 136561 136562 . - . intron_id 0 ; splice_site "AG" KQ414817.1 exonerate:protein2genome:local cds 136440 136560 . - . KQ414817.1 exonerate:protein2genome:local exon 136440 136560 . - . insertions 3 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 136440 136765 156 - . alignment_id 1 ; Query AfOr176P ; Align 136766 155 132 ; Align 136560 200 33 ; Align 136524 211 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1109 Query range: 0 -> 398 Target range: 15100 -> 19909 1 : MetSerSerLysLysGlyArgAspLeuSerIleThrValValSerPheTyrMetLysIle : 20 ||||||||| ! ! !|||:!!||||||!:!:!!..!||| !!!:!||||||||| MetSerSerPheThrThrAspAspIleSerIleSerLeuThrSerValPheMetLysIle 15101 : ATGAGTAGTTTCACCACCGATGACATATCAATCAGCCTGACGTCCGTTTTCATGAAGATC : 15158 21 : ValGlyPheTrpLeuAlaLysAsnHisValGluGluArgTrpArgAsnPheAlaMetIle : 40 ||||||.!.|||:!!|||..!|||!.! !!|||:!!||| ||||||.!!.!!:!! ! ValGlyLeuTrpMetAlaSerAsnArgPheGluGlnArgValArgAsnIleThrLeuCys 15159 : GTTGGACTGTGGATGGCGTCGAACCGTTTCGAGCAACGAGTACGAAATATCACGCTGTGT : 15218 41 : TyrThrThrPheAlaIleLeuValAlaIleValValGluThrArgAspLeuTyrPheThr : 60 |||||| !.!!||||||||| !!|||:!: !:!!:!!! !! !|||||||||!:!:!! TyrThrLeuIleAlaIleLeuPheAlaLeuTrpIleGlnMetThrAspLeuTyrTyrSer 15219 : TACACGCTGATCGCGATTCTCTTCGCCCTGTGGATACAAATGACGGATTTGTATTACTCG : 15278 61 : TrpGlyAspPheSer >>>> Target Intron 1 >>>> GlyThrValTyrIleV : 71 ||||||||||||.!! 891 bp !.! !:!!|||! !! TrpGlyAspPheGly++ ++AlaCysLeuTyrThrA 15279 : TGGGGAGATTTTGGTgt.........................agGCCTGTTTATATACTG : 16202 72 : alCysAsnLeuValThrIleIleLeuValLeuPheLysIleLeuValCysPheValTyrL : 91 .!||||||:!!:!!:!!:!!! !:!! !!!!.!!||||||||||||! .!!!.!:::| laCysAsnIleLeuSerLeuThrIleProPheLeuLysIleLeuValLeuLeuAlaHisL 16203 : CATGCAACATTTTATCGTTAACAATACCGTTTCTCAAGATACTCGTCTTGCTTGCAcaca : 16262 92 : ysLysGluLeuLeuSerLeuIleGlnTyrAlaLysThrAsnPheTrpHisSerAsnTyrA : 111 ||...:::...... |||||| !:!! !:!! !.!.|||! !|||:!!:!!|||: ysAsnAspPhePheHisLeuIleLeuHisLeuGlnArgGluPheLeuHisAlaAspTyrA 16263 : aaaatgatttttttcatttgattcTGCACCTACAACGAGAATTCTTGCATGCAGATTACG : 16322 112 : snSerHisGluArgMetIleValAspArgCysLysArgThrCysThrValLeuValCysV : 131 !!..!:!!|||!:!! !|||:!! ! !!|||:!!||| !|||||| !!!!!|||||| spAspTyrGluLysLysIleLeuLeuGlyCysGlnArgGlnCysThrPhePheValCysP 16323 : ACGACTACGAGAAAAAGATTTTGCTCGGTTGCCAACGTCAATGTACCTTCTTCGTTTGTT : 16382 132 : alPheThrPhePheAlaGlnGlyThrValIleSerTyrValIleGlyProIleGln{A} : 150 !!||||||.!!|||.!!:!!||||||||||||||||||:!!:!!..!|||:!! {|} hePheThrLeuPheThrLysGlyThrValIleSerTyrIleValAsnProLeuIle{A}+ 16383 : TCTTCACACTTTTCACTAAAGGAACTGTTATCTCGTACATCGTTAATCCGCTTATT{G}g : 16440 151 : >>>> Target Intron 2 >>>> {la}AsnIleGlyArgAsnGluThrAsnArgI : 160 1386 bp {||}|||||||||:::||||||:!!.!.|||| + ++{la}AsnIleGlyLysAsnGluSerGluArgI 16441 : t.........................ag{ca}aatattggaaaaaatgagTCAGAGAGGA : 17855 161 : leLeuProPheAsnIleTrpLeuAsnValProIleCysTyrMetThrProTyrPheGluI : 180 ||||||||||||||!!:|||:!!|||:!!|||:!!! ||||||||||||!:!|||| leLeuProPheAsnMetTrpValAsnLeuProLeuSer---MetThrProTyrTyrGluI 17856 : TACTTCCATTTAATATGTGGGTCAACTTGCCATTATCA---ATGACGCCATATTACgaaa : 17912 181 : leGluPheIleIleGln >>>> Target Intron 3 >>>> ValLeuCysLeuTy : 190 || ||| :::||| 110 bp ||||||! !||||| leThrPheSerLeuGln++ ++ValLeuSerLeuTy 17913 : taactttttcattaCAGgt.........................aggtTCTGTCTCTGTA : 18052 191 : rHisValGlyValCysTyrLeuCysPheAspAsnIleLeuCysIleMetAsnLeuHisTh : 210 ||||:!!|||||| !!|||!!!||||||||||||...|||||||||||||||||||||.! rHisIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisAl 18053 : CCATATTGGCGTGAGTTATTTCTgcttcgacaattttttatgcatCATGAACTTGCACGC : 18112 211 : rAlaGlyGlnPheArgIleLeuGlnTyrArgLeuGluAsnMetCysGlyGluAsnAsnAs : 230 !||| !|||||||||:!!||||||||||||:!!! !|||||| !! ! !!!.:::.. aAlaThrGlnPheArgValLeuGlnTyrArgMetAlaAsnMetThrAspLeuLysAspLy 18113 : GGCTACTCAGTTTCGAGTATTGCAATACCGAATGGCGAATATGACCGATTTAAAGGacaa : 18172 231 : nGluLysLeu >>>> Target Intron 4 >>>> SerTyrSerIleCysLysTyr : 240 .|||::: 33 bp !!!!:!:!!! ! ||| sGluArgLys+- -+CysPheAlaThrGluCysTyr 18173 : agagaggaaaga.........................cgTGCTTTGCAACAGAATGTTAC : 18235 241 : MetLysLeuLysThrTyrIleGlnGlnHisGlnMetLeuIleGluTyrCysLysLysLeu : 260 ! |||||| !||||||::!|||||||||! ||||||! ||||||!!.|||||| AsnValLeuLysAspTyrIleArgGlnHisGlnAsnLeuIleAlaTyrCysAsnLysLeu 18236 : AACGTTCTCAAAGATTATATCAGACAGCATCAGAACCTGATTGCTTATTGCAACAAACTC : 18295 261 : GluGlnValPheAsnLeuIleValLeuGlyGlnValSerLeuPheSerLeuLeuMetCys : 280 |||:!!|||||||||:!!|||||||||||||||:!!! !:!!||||||:!!|||!!:||| GluLysValPheAsnIleIleValLeuGlyGlnLeuLeuMetPheSerMetLeuIleCys 18296 : GAGAAAGTGTTCAATATCATTGTTCTGGGGCAATTGTTAATGTTCAGCATGTTGATCTGT : 18355 281 : LeuAspGlyTyrLeuValLeuThr >>>> Target Intron 5 >>>> GluAspA : 291 |||||||||!:!! !:!!|||! ! 975 bp ! !:!!. LeuAspGlyPheGlnIleLeuMet++ ++AlaAsnT 18356 : CTCGATGGATTTCAGATACTTATGgt.........................agGCAAATA : 19363 292 : laProLeuMetArgArgLeuIlePheLeuPheHisIleThrGlyCysMetCysGlnLeuL : 311 !!||| !! ! !||||||||||||:!!||||||||| !!.!|||||||||||||||| hrProThrArgThrArgLeuIlePheIlePheHisIleGlyAlaCysMetCysGlnLeuL 19364 : CACCTACCAGAACCCGACTGATTTTCATCTTTCACATAGGAGCATGCATGTGTCAATTGC : 19423 312 : euMetPheThrTyrSerCysAspCysLeuIleArgAspSerThrAsnValAlaAsnAlaA : 331 ||||||||||||||||||||||||||:!!||||||!!:||||||!:!..!|||.!.|||! euMetPheThrTyrSerCysAspCysIleIleArgGluSerThrSerThrAlaGluAlaV 19424 : TGATGTTTACCTACAGCTGCGACTGCATCATAAGAGAAAGCACGAGCACCGCCGAGGCGG : 19483 332 : laTyrLysSerLeuTrpSerPheLeuProMetAspLysTyrGlyLysIleLeuArgArgA : 351 .!|||!...!!! !|||!!!.!!|||||||||..! ! !!||||||!!::!!|||!:!| alTyrSerGlyProTrpThrLeuLeuProMetSerAlaAspGlyLysMetIleArgLysA 19484 : TGTACAGCGGTCCCTGGACACTTTTACCAATGAGCGCAGACGGAAAAATGATAAGGAAAG : 19543 352 : spLeuMetLeuIleIleMetArgSerAsnIleProCysCysLeuThrAlaSerGlyPheP : 371 |||||||||||:!!||||||||||||!:!:!!||||||||||||||||||!!!||||||| spLeuMetLeuValIleMetArgSerSerValProCysCysLeuThrAlaArgGlyPheP 19544 : ATTTGATGCTCGTTATCATGAGATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCT : 19603 372 : heIleValSerLeuGluThrTyrThrGly >>>> Target Intron 6 >>>> Il : 381 ||:!!|||||||||||||||||||||||| 223 bp :! heValValSerLeuGluThrTyrThrGly++ ++Va 19604 : TCGTCGTGTCTTTAGAAACGTACACAGGGgt.........................agGT : 19856 382 : eLeuSerSerAlaAlaSerTyrPheThrLeuLeuArgAsnHisAlaSerAsp : 398 !||||||!!!||||||||||||||||||||||||!:!.!....:!!..!:!! lLeuSerThrAlaAlaSerTyrPheThrLeuLeuLysGlnArgSerGluAsn 19857 : TTTAAGCACCGCAGCCTCATACTTTACGTTGCTGAAGCAAAGATCAGAGAAT : 19909 vulgar: gi|350425958|ref|XP_003494287.1| 0 398 . KQ414828.1 15100 19909 + 1109 M 65 195 5 0 2 I 0 887 3 0 2 M 84 252 S 0 1 5 0 2 I 0 1382 3 0 2 S 1 2 M 22 66 G 1 0 M 12 36 5 0 2 I 0 106 3 0 2 M 48 144 5 0 2 I 0 29 3 0 2 M 55 165 5 0 2 I 0 971 3 0 2 M 92 276 5 0 2 I 0 219 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15101 19909 1109 + . gene_id 1 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 15101 15295 . + . KQ414828.1 exonerate:protein2genome:local exon 15101 15295 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 15296 15297 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 15296 16186 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 16185 16186 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 16187 16439 . + . KQ414828.1 exonerate:protein2genome:local exon 16187 16439 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 16440 16441 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 16440 17825 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 17824 17825 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 17826 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17826 17929 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 2 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18183 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18183 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18184 18185 . + . intron_id 4 ; splice_site "ga" KQ414828.1 exonerate:protein2genome:local intron 18184 18216 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 18215 18216 . + . intron_id 3 ; splice_site "CG" KQ414828.1 exonerate:protein2genome:local cds 18217 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18217 18381 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 6 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 6 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 5 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19909 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19909 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15101 19909 1109 + . alignment_id 1 ; Query gi|350425958|ref|XP_003494287.1| ; Align 15101 1 195 ; Align 16187 66 252 ; Align 17828 151 66 ; Align 17894 174 36 ; Align 18040 186 144 ; Align 18217 234 165 ; Align 19357 289 276 ; Align 19856 381 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1055 Query range: 2 -> 398 Target range: 712 -> 5262 3 : SerLysLysGlyArgAspLeuSerIleThrValValSerPheTyrMetLysIleValGlyPh : 23 !!!..!!!...!||||||:!!:!!:!:||||||..!:!!||||||:!!||||||:!!||||| ThrSerAsnAsnArgAspIleAlaValThrValThrAlaPheTyrLeuLysIleIleGlyPh 713 : ACTTCGAATAACAGGGACATAGCGGTGACCGTTACGGCTTTCTACTTGAAAATTATCGGCTT : 773 24 : eTrpLeuAlaLysAsnHisValGluGluArgTrpArgAsnPheAlaMetIleTyrThrThrP : 44 |||||||||| ! !.!:!!! !|||:!:||| |||...||||||..!! !!:!|||! !| eTrpLeuAlaAspThrTyrGluGluLysArgArgArgLysPheAlaGlnAsnPheThrIleP 774 : CTGGTTAGCTGACACTTACGAGGAGAAacgtcgaagaaaattcgcgcAGAATTTCACGATAT : 836 45 : heAlaIleLeuValAlaIleValValGluThrArgAspLeuTyrPheThrTrpGlyAspPhe : 64 || !:!::!! !|||:!:|||:!!||||||||||||:!!|||!:!||||||||||||||| heMetLeuValCysAlaValValIleGluThrArgAspIleTyrTyrThrTrpGlyAspPhe 837 : TTATGCTGGTGTGCGCTGTGGTAATTGAGACGAGGGATATCTATTACACCTGGGGTGATTTC : 896 65 : Ser >>>> Target Intron 1 >>>> GlyThrValTyrIleValCysAsnLeuVal : 75 ||| 1408 bp !..!|||||||||:!!||||||:!!:!! Ser++ ++IleValValTyrIleMetCysAsnIleLeu 897 : AGCgt.........................agATCGTTGTATACATAATGTGCAACATTCTA : 2337 76 : ThrIleIleLeuValLeuPheLysIleLeuValCysPheValTyrLysLysGluLeuLeuSe : 96 |||:!: !:!! !||||||||||||!!!:!!! .!. ! !||||||:!!||||||.. ThrLeuGlyIleSerLeuPheLysIlePheLeuSerMetTrpSerLysLysLysLeuLeuGl 2338 : ACACTGGGCATAAGTTTGTTCAAGATCTTTCTCTCGATGTGGAGTAAGAAAAAACttttgga : 2400 97 : rLeuIleGlnTyrAlaLysThrAsnPheTrpHisSerAsnTyrAsnSerHisGluArgMetI : 117 .||||||::::::|||!:!||||||||||||||||||:!!|||:!!|||!!.|||!:!!!:| uLeuIleLysPheAlaArgThrAsnPheTrpHisSerAspTyrAspSerGlnGluGlnIleI 2401 : attaattaaattcgccAGAACGAATTTCTGGCATTCGGATTATGACTCGCAGGAGCAAATTA : 2463 118 : leValAspArgCysLysArgThrCysThrValLeuValCysValPheThrPhePheAlaGln : 137 |||||:!!..!|||||||||||||||||| !!|||:!!|||||||||!.!|||||||||.!. leValAsnGluCysLysArgThrCysThrPheLeuIleCysValPheAsnPhePheAlaAsn 2464 : TTGTGAACGAGTGTAAACGCACTTGTACATTCCTTATATGCGTGTTTAATTTCTTCGCTAAT : 2523 138 : GlyThrValIleSerTyrValIleGlyProIleGln{A} >>>> Target Intron 2 : 150 ||||||||| !.!!|||:!!||| !!|||||| !{|} 318 bp GlyThrValSerGlyTyrIleIleArgProIleVal{A}++ 2524 : GGGACAGTGTCTGGATACATAATCAGGCCAATTGTA{G}gt..................... : 2565 151 : >>>> {la}AsnIleGlyArgAsnGluThrAsnArgIleLeuProPheAsnIleTrpLeuA : 168 {||}!::||||||:::||||||::::!!|||:!!||| ! !!|||.!!|||:!!: ++{la}SerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleA 2566 : ....ag{CA}AgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTG : 2934 169 : snValProIleCysTyrMetThrProTyrPheGluIleGluPheIleIleGln >>>> Ta : 186 !!:!!|||||| ! !!:|||||||||:::|||||| ||| |||||| spLeuProIleThr---IleThrProTyrTyrGluIleLeuPheThrIleGln++ 2935 : ACCTGCCGATAACC---ATCACACCATactatgaaatattatttacgaTACAGgt....... : 2987 187 : rget Intron 3 >>>> ValLeuCysLeuTyrHisValGlyValCysTyrLeuCysPhe : 199 424 bp |||! ! !|||! ! ! !! ! !!:!||||||.!. +-ValCysIleSerTyrLeuCysIleAspAsnPheLeuCysMet 2988 : ..................acGTTTGCATAAGCTACCTTTGTATCGACAATTTTCTGTGCATG : 3448 200 : AspAsnIleLeuCysIleMetAsnLeuHisThrAlaGlyGlnPheArgIleLeuGlnTyrAr : 220 !|||:!!! ! !! .!.!!!!..! ! ! ! ! ! ! ! !! ! ! IleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnValCysGl 3449 : ATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGG : 3511 221 : gLeuGluAsnMetCysGlyGluAsnAsnAsnGluLysLeuSerTyrSerIleCysLysTyrM : 241 ! !.!..!. ::: :::...::: ! !||| !!||| ! ||| yAlaAsnGluArgSerAspLysIleSerLysLysThrProSerAsnSerAspGluCysTyrA 3512 : TGCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACG : 3574 242 : etLysLeuLysThrTyrIleGlnGlnHisGlnMetLeuIleGluTyrCysLysLysLeuGlu : 261 |||!!!|||!.!! !||||||||||||||| |||||||||||||||!!.||||||:!! laLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnLysLeuGln 3575 : CTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACAAACTTCAA : 3634 262 : GlnValPheAsnLeuIleValLeuGlyGlnValSerLeuPheSerLeuLeuMetCysLeuAs : 282 :!!||||||..!:!!.!!||||||!.!||||||! !|||||||||||||||||||||||||| GluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAs 3635 : GAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGA : 3697 283 : pGlyTyrLeuValLeuThr >>>> Target Intron 4 >>>> GluAspAlaProLe : 293 |||||||||||||:!! 457 bp ||||||.!!|||:! pGlyTyrLeuValMet---++ ++GluAspThrProIl 3698 : TGGATATTTGGTGATG---gt.........................agGAAGATACTCCCAT : 4184 294 : uMetArgArgLeuIlePheLeuPheHisIleThrGlyCysMetCysGlnLeuLeuMetPheT : 314 !|||!:!||||||! !||||||||||||:!!|||||||||:!!||||||||||||||||||| eMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuMetPheT 4185 : TATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGATGTTCA : 4247 315 : hrTyrSerCysAspCysLeuIleArgAspSerThrAsnValAlaAsnAlaAlaTyrLysSer : 334 ||||||||||||||||||||||||||!!:||| !||||||||||||||| !||| ! !!! hrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIleTyrAspCys 4248 : CCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATATACGACTGC : 4307 335 : LeuTrpSerPheLeuProMetAspLysTyrGlyLysIleLeuArgArgAspLeuMetLeuIl : 355 ! !|||! ! !||||||||||||!:!! !|||::!!!:||||||!:!||||||! !!!:! SerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAspLeuThrPheVa 4308 : TCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGACATTCGT : 4370 356 : eIleMetArgSerAsnIleProCysCysLeuThrAlaSerGlyPhePheIleValSerLeuG : 376 !||| ||||||!..:!!||||||||||||||||||!!!||||||||| !|||||||||| lIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePheProValSerLeuG 4371 : CATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGG : 4433 377 : luThrTyrThrGly >>>> Target Intron 5 >>>> IleLeuSerSerAlaAlaS : 387 |||||||||||..! 761 bp |||||||||!!!||||||| luThrTyrThrSer++ ++IleLeuSerThrAlaAlaS 4434 : AAACGTACACTTCGgt.........................agATTTTAAGTACCGCAGCGT : 5227 388 : erTyrPheThrLeuLeuArgAsnHisAlaSerAsp : 398 |||||||||||||||||||||||!!.! !:!!!!: erTyrPheThrLeuLeuArgAsnGlnGluAlaGlu 5228 : CATACTTCACACTGCTACGAAACCAAGAAGCAGAA : 5262 vulgar: gi|350425958|ref|XP_003494287.1| 2 398 . KQ414828.1 712 5262 + 1055 M 63 189 5 0 2 I 0 1404 3 0 2 M 84 252 S 0 1 5 0 2 I 0 314 3 0 2 S 1 2 M 22 66 G 1 0 M 12 36 5 0 2 I 0 420 3 0 2 M 102 306 G 1 0 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 757 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 713 5262 1055 + . gene_id 2 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 713 901 . + . KQ414828.1 exonerate:protein2genome:local exon 713 901 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 902 903 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 902 2309 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 2308 2309 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 2310 2562 . + . KQ414828.1 exonerate:protein2genome:local exon 2310 2562 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2563 2564 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 2563 2880 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 2879 2880 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 2881 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2881 2984 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 3 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3408 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 3407 3408 . + . intron_id 2 ; splice_site "AC" KQ414828.1 exonerate:protein2genome:local cds 3409 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3409 3714 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 5208 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 5207 5208 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 5209 5262 . + . KQ414828.1 exonerate:protein2genome:local exon 5209 5262 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 713 5262 1055 + . alignment_id 2 ; Query gi|350425958|ref|XP_003494287.1| ; Align 713 3 189 ; Align 2310 66 252 ; Align 2883 151 66 ; Align 2949 174 36 ; Align 3409 186 306 ; Align 4172 289 276 ; Align 5209 381 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 567 Query range: 0 -> 226 Target range: 31105 -> 32927 1 : MetSerSerLysLysGlyArgAspLeuSerIleThrValValSerPheTyrMetLysIle : 20 ||||||! !||| ! !!!:!|||:!!|||.!!! !:!!!.!!:!|||!:!:!! ! :!! MetSerLeuLysTyrArgGlnAspValSerPheArgLeuAlaAsnPhePheLeuTyrVal 31106 : ATGAGCTTGAAATATCGTCAAGACGTTTCCTTTAGATTAGCCAACTTTTTTCTGTATGTT : 31163 21 : ValGlyPheTrpLeuAlaLysAsnHisValGluGluArgTrpArgAsnPheAlaMetIle : 40 ||||||||||||!!!||| |||!.!:!!|||||| !!!::|||||| !|||!!::!: ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeu 31164 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCTGCGATTCTG : 31223 41 : TyrThrThrPheAlaIleLeuValAlaIleValValGluThrArgAspLeuTyrPheThr : 60 ||||||! ! !!.!!:!!!!! !!!.!!!: !:!!:!! !|||! |||||||||:!! TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSer 31224 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGGCTTTATTTCTCC : 31283 61 : TrpGlyAspPheSer >>>> Target Intron 1 >>>> GlyThrValTyrIleV : 71 ||||||:!!|||..! 670 bp ! ! !:!!|||!!:! TrpGlyAsnPheGlu++ ++ValCysMetTyrMetA 31284 : TGGGGAAACTTTGAAgt.........................agGTTTGCATGTACATGG : 31986 72 : alCysAsnLeuValThrIleIleLeuValLeuPheLysIleLeuValCysPheValTyrL : 91 .!|||||| !:!!.!!:!::!!|||! !:!!.!!||||||!!!||| !!||| | laCysAsnSerIleAlaLeuValLeuAspIleIleLysIlePheValLeuValValArgL 31987 : CATGCAACAGTATAGCCCTGGTTTTGGATATAATCAAGATTTTCGTCCTAGTCGTACGGA : 32046 92 : ysLysGluLeuLeuSerLeuIleGlnTyrAlaLysThrAsnPheTrpHisSerAsnTyrA : 111 |||||:!!!!!|||.!!||||||:!!||| ::: ||||||:::||| ||||||: ysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPhePheHisLeuAsnTyrA 32047 : AGAAAAAGTTTCTCGGTCTGATTGAGTACATgcagaagaatttctttcatttgaaCTACG : 32106 112 : snSerHisGluArgMetIleValAspArgCysLysArgThrCysThrValLeuValCysV : 131 !!..! !!|||!.! |||:!!! !.!...||||||||||||! ! !!!!||||||| spGlnAspGluAsnSerIleIleAlaHisAlaLysArgThrCysIleTyrPheValCysV 32107 : ATCAGGACGAGAATTCTATTATCGCACACGCGAAACGAACGTGCATCTACTTCGTCTGCG : 32166 132 : alPheThrPhePheAlaGlnGlyThrValIleSerTyrValIleGlyProIleGln{A} : 150 |||||:!!|||! !:!!|||..!||||||.!!||||||:!!||| !!|||.!! !{:} alPheSerPheCysSerGlnSerThrValPheSerTyrIleIleArgProPheVal{S}+ 32167 : TCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTATATAATAAGGCCATTTGTA{T}g : 32224 151 : >>>> Target Intron 2 >>>> {la}AsnIleGlyArgAsnGluThrAsnArgI : 160 170 bp {!!}|||:!!|||!:!||||||:!!:!!||| + ++{er}AsnLeuGlyLysAsnGluSerAspArgG 32225 : t.........................ag{ca}AATCTTGGAAAGAATGAATCTGATAGAG : 32423 161 : leLeuProPheAsnIleTrpLeuAsnValProIleCysTyrMetThrProTyrPheGluI : 180 !! ! !!:!:!!!!:||||||:!!:!!|||:!!! ! :!:|||||||||:::|||| luHisIleTyrAspMetTrpLeuAspLeuProLeuSer---ValThrProTyrTyrGluI 32424 : AACATATATACGATATGTGGCTCGATCTACCATTATCC---GTAACAccatattatgaaa : 32480 181 : leGluPheIleIleGln >>>> Target Intron 3 >>>> ValLeuCysLeuTy : 190 || ::!||||||||| 307 bp !.!|||! !:!!|| leThrTyrIleIleGln++ ++AlaLeuSerValTy 32481 : ttacttACATAATACAGgt.........................agGCTTTATCTGTGTA : 32817 191 : rHisValGlyValCysTyrLeuCysPheAspAsnIleLeuCysIleMetAsnLeuHisTh : 210 |!!.|||||||||||||||||||||||||||||||||... |||||| !||||||.. rGlnValGlyValCysTyrLeuCysPheAspAsnIlePhePheIleMetCysLeuHisVa 32818 : CCAAGTTGGAGTGTGTTACCTTTGCTttgataacatttttttcattatgtgTCTACACGT : 32877 211 : rAlaGlyGlnPheArgIleLeuGlnTyrArgLeuGluAsnMetCysGly : 226 !||||||||||||||||||||||||||||||:!!! |||:!!! ||| lAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnValSerGly 32878 : GGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGT : 32927 vulgar: gi|350425958|ref|XP_003494287.1| 0 226 . KQ414828.1 31105 32927 + 567 M 65 195 5 0 2 I 0 666 3 0 2 M 84 252 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 22 66 G 1 0 M 12 36 5 0 2 I 0 303 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31106 32927 567 + . gene_id 3 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 31106 31300 . + . KQ414828.1 exonerate:protein2genome:local exon 31106 31300 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 31301 31302 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 31301 31970 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 31969 31970 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 31971 32223 . + . KQ414828.1 exonerate:protein2genome:local exon 31971 32223 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32224 32225 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32224 32393 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 32392 32393 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 32394 32497 . + . KQ414828.1 exonerate:protein2genome:local exon 32394 32497 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 32498 32499 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32498 32804 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 32803 32804 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32805 32927 . + . KQ414828.1 exonerate:protein2genome:local exon 32805 32927 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31106 32927 567 + . alignment_id 3 ; Query gi|350425958|ref|XP_003494287.1| ; Align 31106 1 195 ; Align 31971 66 252 ; Align 32396 151 66 ; Align 32462 174 36 ; Align 32805 186 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 414 Query range: 0 -> 190 Target range: 26060 -> 27465 1 : MetSerSerLysLysGlyArgAspLeuSerIleThrValValSerPheTyrMetLysIle : 20 ||||||! !||| ! !!!:!|||:!!|||:!!! !:!!!.!!:!|||!:!:!! ! :!! MetSerLeuLysTyrArgGlnAspValSerValArgLeuAlaAsnPhePheLeuTyrVal 26061 : ATGAGCTTGAAATATCGTCAAGACGTTTCCGTTAGATTAGCCAACTTTTTTCTGTATGTC : 26118 21 : ValGlyPheTrpLeuAlaLysAsnHisValGluGluArgTrpArgAsnPheAlaMetIle : 40 ||||||||||||!!!||| |||!.!:!!|||||| !!!::|||||| |||!!::!: ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeu 26119 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCGGCGATTCTG : 26178 41 : TyrThrThrPheAlaIleLeuValAlaIleValValGluThrArgAspLeuTyrPheThr : 60 ||||||! ! !!.!!:!!!!! !!!.!!!: !:!!:!! ! !!! |||||||||.!! TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuGlyGlyLeuTyrPheAla 26179 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGGGAGGGCTTTATTTCGCC : 26238 61 : TrpGlyAspPheSer >>>> Target Intron 1 >>>> GlyThrValTyrIleV : 71 ||||||:!!|||..! 669 bp ! ! !:!!|||!!:! TrpGlyAsnPheGlu++ ++ValCysMetTyrMetA 26239 : TGGGGAAACTTTGAAgt.........................agGTTTGCATGTACATGG : 26940 72 : alCysAsnLeuValThrIleIleLeuValLeuPheLysIleLeuValCysPheValTyrL : 91 .! !!||| !:!!.!!!!::!!|||! !:!!.!!||||||!!!..! !!|||:!!| laGlyAsnGlyLeuAlaMetValLeuAspIleIleLysIlePheThrLeuValValHisL 26941 : CTGGCAACGGTTTAGCCATGGTTTTGGATATAATCAAGATTTTCACCCTAGTCGTACACA : 27000 92 : ysLysGluLeuLeuSerLeuIleGlnTyrAlaLysThrAsnPheTrpHisSerAsnTyrA : 111 |||||:!!!!!|||.!!||||||:!!||| !:!!! !||||||||||||! !||||||: ysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheTrpHisLeuAsnTyrA 27001 : AGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTTTGGCATTTGAACTACG : 27060 112 : snSerHisGluArgMetIleValAspArgCysLysArgThrCysThrValLeuValCysV : 131 !!..!:!!|||!.! :!!:!!! !:!...||||||! !|||! ! !!!!||||||| spGlnTyrGluAsnSerValLeuAlaGlnAlaLysArgMetCysIleTyrPheValCysV 27061 : ATCAGTACGAGAATTCTGTTTTGGCACAGGCGAAACGAATGTGCATTTACTTCGTGTGcg : 27120 132 : alPheThrPhePheAlaGlnGlyThrValIleSerTyrValIleGlyProIleGln{A} : 150 ||...:::||||||:::|||...:!!|||:!!||||||:!!||| !!|||:!! !{:} alLeuSerPhePheSerGlnSerSerValLeuSerTyrIleIleArgProLeuVal{S}+ 27121 : ttttgtcatttttttctcaatctTCAGTTCTTTCCTATATCATAAGGCCACTTGTA{T}g : 27178 151 : >>>> Target Intron 2 >>>> {la}AsnIleGlyArgAsnGluThrAsnArgI : 160 169 bp {!!}|||:!!|||!:!||||||:!!:!!||| + ++{er}AsnLeuGlyLysAsnGluSerAspArgG 27179 : t.........................ag{ca}AATCTTGGAAAGAATGAATCGGATAGAG : 27376 161 : leLeuProPheAsnIleTrpLeuAsnValProIleCysTyrMetThrProTyrPheGluI : 180 !! ! !|||:!!!!:|||!!!:!!:!!|||:!!! ! :!:|||||||||:::|||| luHisIlePheAspMetTrpPheAspLeuProLeuSer---ValThrProTyrTyrGluI 27377 : AACATATATTCGATATGTGGTTCGATCTACCATTATCC---GTAACAccatattatgaaa : 27433 181 : leGluPheIleIleGlnValLeuCysLeuTyr : 190 || ::!||||||||||||||| :!!!:! leThrTyrIleIleGlnValLeuProIlePhe 27434 : ttacttACATAATACAGGTATTACCAATTTTC : 27465 vulgar: gi|350425958|ref|XP_003494287.1| 0 190 . KQ414828.1 26060 27465 + 414 M 65 195 5 0 2 I 0 665 3 0 2 M 84 252 S 0 1 5 0 2 I 0 165 3 0 2 S 1 2 M 22 66 G 1 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26061 27465 414 + . gene_id 4 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 26061 26255 . + . KQ414828.1 exonerate:protein2genome:local exon 26061 26255 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 26256 26257 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 26256 26924 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 26923 26924 . + . intron_id 0 ; splice_site "aG" KQ414828.1 exonerate:protein2genome:local cds 26925 27177 . + . KQ414828.1 exonerate:protein2genome:local exon 26925 27177 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 27178 27179 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 27178 27346 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 27345 27346 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 27347 27465 . + . KQ414828.1 exonerate:protein2genome:local exon 27347 27465 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 26061 27465 414 + . alignment_id 4 ; Query gi|350425958|ref|XP_003494287.1| ; Align 26061 1 195 ; Align 26925 66 252 ; Align 27349 151 66 ; Align 27415 174 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 399 Query range: 225 -> 399 Target range: 32948 -> 34316 226 : GlyGluAsnAsnAsnGluLysLeuSerTyrSerIleCysLysTyrMetLysLeuLysThr : 245 ..!!!:|||!..!:! ! !! !|||||| |||!!:|||!!!|||!.! AsnAspAsnThrSerThrAlaGluLeuTyrSerGluLysCysTyrIleLysPheLysAsn 32949 : AATGATAATACAAGCACGGCTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAAT : 33006 246 : TyrIleGlnGlnHisGlnMetLeuIleGluTyrCysLysLysLeuGluGlnValPheAsn : 265 ! !||||||||||||||| |||||||||:::|||::: ||||||:!!||||||!.. CysIleGlnGlnHisGlnAlaLeuIleGluPheCysGluIleLeuGluGluValPheThr 33007 : TGCATTCAACAACATCAGGCACTaattgaattttgtgaaatactCGAAGAGGTATTCACG : 33066 266 : LeuIleValLeuGlyGlnValSerLeuPheSerLeuLeuMetCysLeuAspGlyTyrLeu : 285 :!!|||||||||||||||||| !:!!||||||:!!:!!!!:|||!!!! !|||||| ! ValIleValLeuGlyGlnValLeuMetPheSerIleIleIleCysPheAlaGlyTyrGlu 33067 : GTAATCGTACTCGGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAA : 33126 286 : ValLeuThr >>>> Target Intron 1 >>>> GluAspAlaProLeuMetArgA : 296 |||||| ! 406 bp ! !|||!!! !| ValLeuLeu++ ++IleThrLeuProPheGluSerA 33127 : GTACTCCTGgt.........................agATAACGTTACCATTTGAATCGC : 33565 297 : rgLeuIlePheLeuPheHisIleThrGlyCysMetCysGlnLeuLeuMetPheThrTyrS : 316 ||:!! !||| !! ! !:!:! ! ! !!:!! !!||||||! !||||||||||||| rgValAlaPheThrCysPheLeuIleThrGlyValSerGlnLeuTrpMetPheThrTyrS 33566 : GCGTTGCTTTCACGTGCTTCTTGATTACGGGCGTGAGTCAACTATGGATGTTCACGTACA : 33625 317 : erCysAspCysLeuIleArgAspSerThrAsnValAlaAsnAlaAlaTyrLysSerLeuT : 336 |||||:!!|||:!!! !! !!!:||| !|||:!!|||.!.:!!!.!||| .!!! !| erCysAsnCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProT 33626 : GTTGCAATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCAT : 33685 337 : rpSerPheLeuProMetAspLysTyrGlyLysIleLeuArgArgAspLeuMetLeuIleI : 356 ||! ! !|||||||||||||||:::||||||:::||||||!:!||||||...:!!:!!| rpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuI 33686 : GGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAGGATTTACAAGTGCTCA : 33745 357 : leMetArgSerAsnIleProCysCysLeuThrAlaSerGlyPhePheIleValSerLeuG : 376 ||:!!|||:!!!.. !|||! !..!|||||||||!!!||||||||| !:!!!!!|||| leLeuArgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleThrLeuG 33746 : TCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATAACTCTCG : 33805 377 : luThrTyrThrGly >>>> Target Intron 2 >>>> IleLeuSerSerAlaAl : 386 |||||!:!||| ! 440 bp |||:!!|||!!!:!! luThrPheThrLys++ ++IleMetSerThrSerMe 33806 : AAACCTTTACTAAGgt.........................agATCATGAGTACATCAAT : 34275 387 : aSerTyrPheThrLeuLeuArgAsnHisAlaSerAspThr : 399 !||||||||||||||||||!:!.!. !|||..!|||||| tSerTyrPheThrLeuLeuLysGlnSerAlaGluAspThr 34276 : GTCGTATTTCACCCTACTAAAACAAAGTGCCGAGGACACA : 34316 vulgar: gi|350425958|ref|XP_003494287.1| 225 399 . KQ414828.1 32948 34316 + 399 M 63 189 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32949 34316 399 + . gene_id 5 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32949 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32949 33137 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 2 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34316 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34316 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32949 34316 399 + . alignment_id 5 ; Query gi|350425958|ref|XP_003494287.1| ; Align 32949 226 189 ; Align 33544 289 276 ; Align 34260 381 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 330 Query range: 225 -> 381 Target range: 22869 -> 23829 226 : GlyGluAsnAsnAsnGluLysLeuSerTyrSerIleCysLysTyrMetLysLeuLysThr : 245 .!!|||||| !:! ! ! !! !|||||| |||!!:|||!!!|||!.! SerGluAsnProSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsn 22870 : AGTGAAAATCCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAAT : 22927 246 : TyrIleGlnGlnHisGlnMetLeuIleGluTyrCysLysLysLeuGluGlnValPheAsn : 265 ! !||||||||||||||| |||||||||!:!||| !! !||||||:!!||||||!.. CysIleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThr 22928 : TGCATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACG : 22987 266 : LeuIleValLeuGlyGlnValSerLeuPheSerLeuLeuMetCysLeuAspGlyTyrLeu : 285 :!!|||||||||||||||||| !:!!! !|||:!!|||!!:|||!!! !||||||! ! ValIleValLeuGlyGlnValLeuMetSerSerIleLeuIleCysPheIleGlyTyrGln 22988 : GTAATCGTACTCGGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAA : 23047 286 : ValLeuThrGluAspAlaProLeuMetArgArgLeu{I} >>>> Target Intron : 298 |||||| !! !..! ! ! ! !.!!:!! !{ } 492 bp ValLeuLeuValSerIleGluSerTyrAsnLysTyr{S}++ 23048 : GTACTCCTGGTGAGTATCGAAAGCTATAATAAATAC{T}gt................... : 23089 299 : 1 >>>> {le}PheLeuPheHisIleThrGlyCysMetCysGlnLeuLeuMetPheThr : 314 { !}||| !! ! !:!:! ! ! !!||| !!||||||! !||||||||| -+{er}PheAlaCysPheLeuMetMetGlyMetSerGlnLeuTrpMetPheThr 23090 : ......tg{CT}TTCGCGTGCTTCTTGATGATGGGCATGAGTCAACTATGGATGTTCACG : 23626 315 : TyrSerCysAspCysLeuIleArgAspSerThrAsnValAlaAsnAlaAlaTyrLysSer : 334 |||||||||||||||:!!! !! !!!:||| !|||:!!|||.!.:!!!.!||| .!! TyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGly 23627 : TATAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGA : 23686 335 : LeuTrpSerPheLeuProMetAspLysTyrGlyLysIleLeuArgArgAspLeuMetLeu : 354 ! !|||! ! !|||||||||||||||!:!||||||:!:||||||!:!!!:|||...:!! ProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysGluLeuGlnMet 23687 : CCATGGATAAATTTACCAATGGACAAATTTGGAAAACTGCTAAGAAAAGAATTGCAAATG : 23746 355 : IleIleMetArgSerAsnIleProCysCysLeuThrAlaSerGlyPhePheIleValSer : 374 :!!|||:!!|||:!!!.. !|||! !..!|||||||||!!!||||||||| !:!!||| LeuIleLeuArgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleSer 23747 : CTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATATCT : 23806 375 : LeuGluThrTyrThrGlyIle : 381 |||||||||!:!||| !:!! LeuGluThrPheThrLysVal 23807 : CTCGAAACCTTTACTAAGGTA : 23829 vulgar: gi|350425958|ref|XP_003494287.1| 225 381 . KQ414828.1 22869 23829 + 330 M 72 216 S 0 1 5 0 2 I 0 488 3 0 2 S 1 2 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22870 23829 330 + . gene_id 6 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22870 23086 . + . KQ414828.1 exonerate:protein2genome:local exon 22870 23086 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23087 23088 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23087 23578 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 23577 23578 . + . intron_id 0 ; splice_site "TG" KQ414828.1 exonerate:protein2genome:local cds 23579 23829 . + . KQ414828.1 exonerate:protein2genome:local exon 23579 23829 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22870 23829 330 + . alignment_id 6 ; Query gi|350425958|ref|XP_003494287.1| ; Align 22870 226 216 ; Align 23581 299 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 288 Query range: 289 -> 398 Target range: 12472 -> 13158 290 : AspAlaProLeuMetArgArgLeuIlePheLeuPheHisIleThrGlyCysMetCysGln : 309 :!!.!! !!||| |||||| !||||||:!!|||! !||| !|||..!||| ! ! AsnThrSerLeuAlaArgArgSerIlePheMetPheLeuIleCysGlyAlaMetValLeu 12473 : AATACTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTTTTA : 12530 310 : LeuLeuMetPheThrTyrSerCysAspCysLeuIleArgAspSerThrAsnValAlaAsn : 329 |||!!!||||||||||||||||||:!! :!!|||..!.!.||| !|||:!!||| ! LeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAlaPhe 12531 : TTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCTTTT : 12590 330 : AlaAlaTyrLysSerLeuTrpSerPheLeuProMetAspLysTyrGlyLysIleLeuArg : 349 |||||||||..!:!!||||||!!! !:!!||||||:!!||| !||||||! |||||| AlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeuArg 12591 : GCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTACGG : 12650 350 : ArgAspLeuMetLeuIleIleMetArgSerAsnIleProCysCysLeuThrAlaSerGly : 369 !.!||||||!!::!!:!!||| !||||||!.. ! !|||||||||||||||!:!||| HisAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsnGly 12651 : CATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATGGA : 12710 370 : PhePheIleValSerLeuGluThrTyrThr--{G} >>>> Target Intron 1 >> : 380 |||||| !|||||||||||||||||||||##{!} 357 bp PhePheProValSerLeuGluThrTyrThr##{G}++ 12711 : TTTTTCCCTGTGTCCTTAGAAACTTATACTAC{G}gt....................... : 12748 381 : >> {ly}IleLeuSerSerAlaAlaSerTyrPheThrLeuLeuArgAsnHisAlaSerA : 398 { !}|||||||||!!!||||||||||||||||||||||||||||||:!!!.!..!| +-{lu}IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnValGluA 12749 : ..ac{ag}attttgAGTACCGCGGCGTCGTACTTCACATTATTGAGAAATAACGTAGAAG : 13156 399 : sp : 398 || sp 13157 : AT : 13158 vulgar: gi|350425958|ref|XP_003494287.1| 289 398 . KQ414828.1 12472 13158 + 288 M 90 270 F 0 2 S 0 1 5 0 2 I 0 353 3 0 2 S 1 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 12473 13158 288 + . gene_id 7 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 12473 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12473 12745 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13102 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 13101 13102 . + . intron_id 0 ; splice_site "ac" KQ414828.1 exonerate:protein2genome:local cds 13103 13158 . + . KQ414828.1 exonerate:protein2genome:local exon 13103 13158 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 12473 13158 288 + . alignment_id 7 ; Query gi|350425958|ref|XP_003494287.1| ; Align 12473 290 270 ; Align 13105 381 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 261 Query range: 306 -> 399 Target range: 28559 -> 29248 307 : MetCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgAspSerThrAsn : 326 :!! !!||||||! !||||||||||||||||||||||||:!!! !! !!!:||| !||| ValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsn 28560 : GTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAAC : 28617 327 : ValAlaAsnAlaAlaTyrLysSerLeuTrpSerPheLeuProMetAspLysTyrGlyLys : 346 :!!|||.!.:!!!.!||| .!!! !|||! ! !|||||||||||||||:::|||||| IleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLys 28618 : ATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaa : 28677 347 : IleLeuArgArgAspLeuMetLeuIleIleMetArgSerAsnIleProCysCysLeuThr : 366 :::||||||!:!||||||...:!!:!!|||:!!|||:!!!.. !|||! !! !|||||| LeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThr 28678 : ctgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACT : 28737 367 : AlaSerGlyPhePheIleValSerLeuGluThrTyrThrGly >>>> Target Intr : 381 |||!!!||||||||| !:!!||||||||||||!:!||| ! 410 bp AlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 28738 : GCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt................ : 28784 382 : on 1 >>>> IleLeuSerSerAlaAlaSerTyrPheThrLeuLeuArgAsnHisAlaS : 397 |||:!!|||!!!:!! !||||||||||||||||||!:!.!. ! !. ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnCysIleG 28785 : .........agATCATGAGTACATCAATGTCGTATTTCACATTATTAAAACAATGTATCG : 29240 398 : erAspThr : 399 .!|||||| luAspThr 29241 : AGGACACG : 29248 vulgar: gi|350425958|ref|XP_003494287.1| 306 399 . KQ414828.1 28559 29248 + 261 M 74 222 5 0 2 I 0 406 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28560 29248 261 + . gene_id 8 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 28560 28781 . + . KQ414828.1 exonerate:protein2genome:local exon 28560 28781 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 28782 28783 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 28782 29191 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 29190 29191 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 29192 29248 . + . KQ414828.1 exonerate:protein2genome:local exon 29192 29248 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28560 29248 261 + . alignment_id 8 ; Query gi|350425958|ref|XP_003494287.1| ; Align 28560 307 222 ; Align 29192 381 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 250 Query range: 0 -> 148 Target range: 36171 -> 37284 1 : MetSerSerLysLysGlyArgAspLeuSerIleThrValValSerPheTyrMetLysIle : 20 ||||||! !||| ! !!!:!|||:!!||||||! !:!!!.!!:!|||!:!:!! ! :!! MetSerLeuLysTyrArgGlnAspValSerIleLysLeuAlaAsnPhePheLeuTyrVal 36172 : ATGAGCTTGAAATATCGTCAAGACGTTTCCATTAAATTAGCCAACTTTTTTCTGTATGTC : 36229 21 : ValGlyPheTrpLeuAlaLysAsnHisValGluGluArgTrpArgAsnPheAlaMetIle : 40 ||||||||||||!!!||| |||!.!:!!|||||| !!!::|||||| |||!!::!: ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeu 36230 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCGGCGATTCTG : 36289 41 : TyrThrThrPheAlaIleLeuValAlaIleValValGlu >>>> Target Intron : 54 ||||||! ! !!.!!:!!!!! !!!.!!!: !:!!:!! 669 bp TyrThrIleValThrValPhePheValMetTrpLeuGln-+ 36290 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGct................... : 36333 55 : 1 >>>> ThrArgAspLeuTyrPheThrTrpGlyAspPheSerGlyThrValTyrIleV : 71 ... |||||| ::: .....!! ! !:!!|||!!:! --LysAsnLysLeuTyrVal***PheLeuPheLeuGlnValCysMetTyrMetA 36334 : ......taaaaaacaaattatacgtctaatttctatttctacaGGTTTGCATGTACATGG : 37051 72 : alCysAsnLeuValThrIleIleLeuValLeuPheLysIleLeuValCysPheValTyrL : 91 .! !!||| !:!!.!!!!::!!|||! !:!!.!!||||||!!! ! !!|||:!!| laGlyAsnGlyLeuAlaMetValLeuAspIleIleLysIlePheSerLeuValValHisL 37052 : CAGGCAACGGTTTAGCCATGGTTTTGGATATAATCAAGATTTTCTCCCTAGTCGTACACA : 37111 92 : ysLysGluLeuLeuSerLeuIleGlnTyrAlaLysThrAsnPheTrpHisSerAsnTyrA : 111 |||||:!!!!!|||.!!||||||:!!||| !:!!! !||||||! !|||! !||||||: ysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheLeuHisLeuAsnTyrA 37112 : AGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTCTTGCATTTGAACTACG : 37171 112 : snSerHisGluArgMetIleValAspArgCysLysArgThrCysThrValLeuValCysV : 131 !!..!:!!|||!.! :!!:!!! !:!...||||||! !|||! ! !!!!||||||| spGlnTyrGluAsnSerValIleAlaGlnAlaLysArgMetCysIleTyrPheValCysV 37172 : ATCAGTACGAGAATTCTGTTATCGCACAGGCGAAACGAATGTGCATTTACTTCGTGTGcg : 37231 132 : alPheThrPhePheAlaGlnGlyThrValIleSerTyrValIleGlyProIle : 148 ||...:::||||||:::|||...:!!|||:!!||||||:!!:!! !!|||:!! alLeuSerPhePheSerGlnSerSerValLeuSerTyrIleValArgProLeu 37232 : ttttgtcatttttttctcaatctTCAGTTCTTTCCTATATAGTAAGGCCACTT : 37284 vulgar: gi|350425958|ref|XP_003494287.1| 0 148 . KQ414828.1 36171 37284 + 250 M 53 159 5 0 2 I 0 665 3 0 2 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 36172 37284 250 + . gene_id 9 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 36172 36330 . + . KQ414828.1 exonerate:protein2genome:local exon 36172 36330 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 36331 36332 . + . intron_id 1 ; splice_site "CT" KQ414828.1 exonerate:protein2genome:local intron 36331 36999 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 36998 36999 . + . intron_id 0 ; splice_site "ta" KQ414828.1 exonerate:protein2genome:local cds 37000 37284 . + . KQ414828.1 exonerate:protein2genome:local exon 37000 37284 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 36172 37284 250 + . alignment_id 9 ; Query gi|350425958|ref|XP_003494287.1| ; Align 36172 1 159 ; Align 37000 54 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 225 Query range: 306 -> 381 Target range: 38535 -> 38760 307 : MetCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgAspSerThrAsn : 326 :!! !!||||||! !||||||||||||||||||||||||:!!! !! !!!:||| !||| ValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsn 38536 : GTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAAC : 38593 327 : ValAlaAsnAlaAlaTyrLysSerLeuTrpSerPheLeuProMetAspLysTyrGlyLys : 346 :!!|||.!.:!!!.!||| .!!! !|||! ! !|||||||||||||||:::|||||| IleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLys 38594 : ATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaa : 38653 347 : IleLeuArgArgAspLeuMetLeuIleIleMetArgSerAsnIleProCysCysLeuThr : 366 :::||||||!:!||||||...:!!:!!|||:!!|||:!!!.. !|||! !! !|||||| LeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThr 38654 : ctgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACT : 38713 367 : AlaSerGlyPhePheIleValSerLeuGluThrTyrThrGlyIle : 381 |||!!!||||||||| !:!!||||||||||||!:!||| !:!! AlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 38714 : GCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 38760 vulgar: gi|350425958|ref|XP_003494287.1| 306 381 . KQ414828.1 38535 38760 + 225 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38536 38760 225 + . gene_id 10 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38536 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38536 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38536 38760 225 + . alignment_id 10 ; Query gi|350425958|ref|XP_003494287.1| ; Align 38536 307 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 217 Query range: 63 -> 147 Target range: 21885 -> 22137 64 : PheSerGlyThrValTyrIleValCysAsnLeuValThrIleIleLeuValLeuPheLys : 83 |||... ! !:!!|||!!:!.!|||||| !:!!.!!:!::!!|||! !:!!.!!||| PheGlnValCysMetTyrMetAlaCysAsnSerLeuAlaLeuValLeuAspIleIleLys 21886 : tttcaggTTTGCATGTACATGGCATGCAACAGTTTAGCCCTGGTTTTGGATATAATCAAG : 21943 84 : IleLeuValCysPheValTyrLysLysGluLeuLeuSerLeuIleGlnTyrAlaLysThr : 103 |||!!!||| .!!||| ||||||:!!!!!|||.!!||||||:!!||| !:!!! ! IlePheValLeuLeuValArgLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLys 21944 : ATTTTCGTCCTACTCGTACGGAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAG : 22003 104 : AsnPheTrpHisSerAsnTyrAsnSerHisGluArgMetIleValAspArgCysLysArg : 123 ||||||||||||! !||||||:!!..! !!|||!.! |||:!!! !.!...|||||| AsnPheTrpHisLeuAsnTyrAspGlnAspGluAsnSerIleIleAlaHisAlaLysArg 22004 : AATTTTTGGCATTTGAACTACGACCAGGACGAGAATTCTATTATCGCACACGCGAAACGA : 22063 124 : ThrCysThrValLeuValCysValPheThrPhePheAlaGlnGlyThrValIleSerTyr : 143 ||||||! ! !!!!||||||||||||:!!|||! !:!!|||..!||||||.!!|||||| ThrCysIleTyrPheValCysValPheSerPheCysSerGlnSerThrValPheSerTyr 22064 : ACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTAT : 22123 144 : ValIleGlyPro : 147 :!!||| !!||| IleIleArgPro 22124 : ATAATAAGGCCA : 22137 vulgar: gi|350425958|ref|XP_003494287.1| 63 147 . KQ414828.1 21885 22137 + 217 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21886 22137 217 + . gene_id 11 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 21886 22137 . + . KQ414828.1 exonerate:protein2genome:local exon 21886 22137 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21886 22137 217 + . alignment_id 11 ; Query gi|350425958|ref|XP_003494287.1| ; Align 21886 64 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 0 -> 61 Target range: 7890 -> 8073 1 : MetSerSerLysLysGlyArgAspLeuSerIleThrValValSerPheTyrMetLysIleVa : 21 |||..!!!!:!!|||! ! !|||:!!||||||!.!:!! !!.!|||!:!:!!:::! !|| MetGlnThrGluLysAspSerAspIleSerIleAsnLeuSerLysPhePheLeuArgAsnVa 7891 : ATGCAAACGGAGAAGGATTCGGACATATCGATCAACTTGTCGAAATTCTTCTTGCGCAATGT : 7951 22 : lGlyPheTrpLeuAlaLysAsnHisValGluGluArgTrpArgAsnPheAlaMetIleTyrT : 42 ||||.!.||| !|||:!!||||||!.!|||.!.||| |||!!. !:!: !|||| lGlyLeuTrpArgAlaGluAsnHisAlaGluAsnArgLysArgLysAlaLeuValAlaTyrT 7952 : CGGCCTGTGGAGGGCTGAGAATCACGCGGAGAATCGTAAAAGGAAAGCGTTGGTCGCCTACA : 8014 43 : hrThrPheAlaIleLeuValAlaIleValValGluThrArgAspLeuTyrPheThrTrp : 61 ||! !!:: !!!:!!!:!!||||||||||||||||||||||||:!!|||||||||||| hrIleTrpAsnMetPheLeuAlaIleValValGluThrArgAspMetTyrPheThrTrp 8015 : CGATTTGGAACATGTTTTTGGCCATAGTGGTTGAAACGAGAGATATGTATTTCACCTGG : 8073 vulgar: gi|350425958|ref|XP_003494287.1| 0 61 . KQ414828.1 7890 8073 + 162 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 7891 8073 162 + . gene_id 12 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 7891 8073 . + . KQ414828.1 exonerate:protein2genome:local exon 7891 8073 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 7891 8073 162 + . alignment_id 12 ; Query gi|350425958|ref|XP_003494287.1| ; Align 7891 1 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 147 -> 226 Target range: 37450 -> 37991 148 : IleGlnAlaAsnIleGlyArgAsnGluThrAsnArgIleLeuProPheAsnIleTrpLeu : 167 |||...||||||:!!|||!:!||||||:!!:!!||| !! ! !!:!:!!!!:|||||| IleSerAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 37451 : atttcagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 37508 168 : AsnValPro >>>> Target Intron 1 >>>> IleCysTyrMetThrProTyrP : 178 :!!:!!||| 304 bp ! |||! !||| AspLeuPro-+ ++LysSerGlnMetIleProGlyA 37509 : GATCTACCAtt.........................agaaatcaCAAATGATTCCAGgta : 37845 179 : heGluIleGluPheIleIleGlnValLeuCysLeuTyrHisValGlyValCysTyrLeuC : 198 ::: ::!! |||!.!|||! !:!!|||!!.|||.!!!.!|||||||||| snLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValSerAlaCysTyrLeuC 37846 : ataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTT : 37905 199 : ysPheAspAsnIleLeuCysIleMetAsnLeuHisThrAlaGlyGlnPheArgIleLeuG : 218 |||||||| |||... |||::: ||||||..!|||||||||||||||||||||| ysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuG 37906 : GCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTAC : 37965 219 : lnTyrArgLeuGluAsnMetCysGly : 226 ||||||||:!!! |||:!!! ||| lnTyrArgIleAlaAsnValSerGly 37966 : AATACAGAATTGCCAATGTGTCAGGT : 37991 vulgar: gi|350425958|ref|XP_003494287.1| 147 226 . KQ414828.1 37450 37991 + 155 M 23 69 5 0 2 I 0 300 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37451 37991 155 + . gene_id 13 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37451 37519 . + . KQ414828.1 exonerate:protein2genome:local exon 37451 37519 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37520 37521 . + . intron_id 1 ; splice_site "TT" KQ414828.1 exonerate:protein2genome:local intron 37520 37823 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37822 37823 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 37824 37991 . + . KQ414828.1 exonerate:protein2genome:local exon 37824 37991 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37451 37991 155 + . alignment_id 13 ; Query gi|350425958|ref|XP_003494287.1| ; Align 37451 148 69 ; Align 37824 171 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 0 -> 64 Target range: 21030 -> 21222 1 : MetSerSerLysLysGlyArgAspLeuSerIleThrValValSerPheTyrMetLysIle : 20 ||||||! !||| ! !!!:!|||:!!|||:!!! !:!!!.!!:!||||||:!! ! :!! MetSerLeuLysTyrArgGlnAspValSerValArgLeuAlaAsnPheTyrLeuTyrVal 21031 : ATGAGCTTGAAATATCGCCAAGACGTTTCCGTTAGATTAGCCAATTTTTATCTGTATGTC : 21088 21 : ValGlyPheTrpLeuAlaLysAsnHisValGluGluArgTrpArgAsnPheAlaMetIle : 40 ||||||||||||!!!||| |||!.!:!!|||||| !!!:: !!||| |||!!::!: ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheGlyAsnAlaAlaIleLeu 21089 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCGGAAACGCGGCGATTCTG : 21148 41 : TyrThrThrPheAlaIleLeuValAlaIleValValGluThrArgAspLeuTyrPheThr : 60 ||||||! ! !!.!!:!!!!! !!!.!!!: !:!!:!! !|||! |||||||||:!! TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSer 21149 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGACTTTATTTCTCC : 21208 61 : TrpGlyAspPhe : 64 ||||||:!!||| TrpGlyAsnPhe 21209 : TGGGGAAACTTT : 21222 vulgar: gi|350425958|ref|XP_003494287.1| 0 64 . KQ414828.1 21030 21222 + 154 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21031 21222 154 + . gene_id 14 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 21031 21222 . + . KQ414828.1 exonerate:protein2genome:local exon 21031 21222 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21031 21222 154 + . alignment_id 14 ; Query gi|350425958|ref|XP_003494287.1| ; Align 21031 1 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 147 -> 226 Target range: 22307 -> 22848 148 : IleGlnAlaAsnIleGlyArgAsnGluThrAsnArgIleLeuProPheAsnIleTrpLeu : 167 ||| ||||||:!!|||!:!||||||:!!:!!||| !! ! !!:!:!!!!:|||||| IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 22308 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 22365 168 : AsnValPro >>>> Target Intron 1 >>>> IleCysTyrMetThrProTyrP : 178 :!!:!!||| 304 bp ! |||! !||| AspLeuPro-+ ++LysSerGlnMetIleProGlyA 22366 : GATCTACCAtt.........................agaaatcaCAAATGATTCCAGgta : 22702 179 : heGluIleGluPheIleIleGlnValLeuCysLeuTyrHisValGlyValCysTyrLeuC : 198 ::: ::!! |||!.!|||! !:!!|||!!.|||.!!!.!|||||||||| snLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValSerAlaCysTyrLeuC 22703 : ataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTT : 22762 199 : ysPheAspAsnIleLeuCysIleMetAsnLeuHisThrAlaGlyGlnPheArgIleLeuG : 218 |||||||| |||... |||::: ||||||..!|||||||||||||||||||||| ysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuG 22763 : GCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTAC : 22822 219 : lnTyrArgLeuGluAsnMetCysGly : 226 ||||||||:!!! |||:!!! ||| lnTyrArgIleAlaAsnValSerGly 22823 : AATACAGAATTGCCAATGTGTCAGGT : 22848 vulgar: gi|350425958|ref|XP_003494287.1| 147 226 . KQ414828.1 22307 22848 + 153 M 23 69 5 0 2 I 0 300 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22308 22848 153 + . gene_id 15 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22308 22376 . + . KQ414828.1 exonerate:protein2genome:local exon 22308 22376 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22377 22378 . + . intron_id 1 ; splice_site "TT" KQ414828.1 exonerate:protein2genome:local intron 22377 22680 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22679 22680 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 22681 22848 . + . KQ414828.1 exonerate:protein2genome:local exon 22681 22848 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22308 22848 153 + . alignment_id 15 ; Query gi|350425958|ref|XP_003494287.1| ; Align 22308 148 69 ; Align 22681 171 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 238 -> 287 Target range: 11014 -> 11161 239 : LysTyrMetLysLeuLysThrTyrIleGlnGlnHisGlnMetLeuIleGluTyrCysLys : 258 ...||| !|||!!!|||!:!|||:!!!:!|||||||||! !||||||!!:|||! !:!! SerTyrGluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGlu 11015 : TCTTACGAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAG : 11072 259 : LysLeuGluGlnValPheAsnLeuIleValLeuGlyGlnValSerLeuPheSerLeuLeu : 278 |||||||||!!.|||!:!!.. !|||:!!||||||||||||! !|||||||||:!!||| LysLeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeu 11073 : AAGCTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTA : 11132 279 : MetCysLeuAspGlyTyrLeuValLeu : 287 !!:|||||| !||||||! !:!!||| IleCysLeuPheGlyTyrGlnIleLeu 11133 : ATTTGCCTCTTTGGTTATCAGATATTA : 11161 vulgar: gi|350425958|ref|XP_003494287.1| 238 287 . KQ414828.1 11014 11161 + 151 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 11015 11161 151 + . gene_id 16 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 11015 11161 . + . KQ414828.1 exonerate:protein2genome:local exon 11015 11161 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 11015 11161 151 + . alignment_id 16 ; Query gi|350425958|ref|XP_003494287.1| ; Align 11015 239 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 188 -> 224 Target range: 10840 -> 10948 189 : LeuTyrHisValGlyValCysTyrLeuCysPheAspAsnIleLeuCysIleMetAsnLeu : 208 |||||| !..!|||:!!||||||!!!|||||||||||||||!!!|||||||||!:!:!! LeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerVal 10841 : CTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTG : 10898 209 : HisThrAlaGlyGlnPheArgIleLeuGlnTyrArgLeuGluAsnMet : 224 ||| !::!|||||||||||||||||||||||||||||| !!!.:!! HisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeu 10899 : CATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTG : 10948 vulgar: gi|350425958|ref|XP_003494287.1| 188 224 . KQ414828.1 10840 10948 + 146 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10841 10948 146 + . gene_id 17 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 10841 10948 . + . KQ414828.1 exonerate:protein2genome:local exon 10841 10948 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10841 10948 146 + . alignment_id 17 ; Query gi|350425958|ref|XP_003494287.1| ; Align 10841 189 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 225 -> 287 Target range: 38012 -> 38198 226 : GlyGluAsnAsnAsnGluLysLeuSerTyrSerIleCysLysTyrMetLysLeuLysThr : 245 .!!|||||| !:! ! ! !! !|||||| |||!!:|||!!!|||!.! SerGluAsnProSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsn 38013 : AGTGAAAATCCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAAT : 38070 246 : TyrIleGlnGlnHisGlnMetLeuIleGluTyrCysLysLysLeuGluGlnValPheAsn : 265 ! !||||||||||||||| |||||||||!:!||| !! !||||||:!!||||||!.. CysIleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThr 38071 : TGCATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACG : 38130 266 : LeuIleValLeuGlyGlnValSerLeuPheSerLeuLeuMetCysLeuAspGlyTyrLeu : 285 :!!|||!.!|||||||||||| !:!!||||||:!!|||!!:|||!!!! !! !|||! ! ValIleAlaLeuGlyGlnValLeuMetPheSerIleLeuIleCysPheValValTyrGln 38131 : GTAATTGCACTCGGACAAGTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAA : 38190 286 : ValLeu : 287 !.!||| AlaLeu 38191 : GCACTC : 38198 vulgar: gi|350425958|ref|XP_003494287.1| 225 287 . KQ414828.1 38012 38198 + 144 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38013 38198 144 + . gene_id 18 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38013 38198 . + . KQ414828.1 exonerate:protein2genome:local exon 38013 38198 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38013 38198 144 + . alignment_id 18 ; Query gi|350425958|ref|XP_003494287.1| ; Align 38013 226 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 397 Query range: 235 -> 397 Target range: 18219 -> 19903 236 : TyrAlaAspLysCysTyrIleAlaLeuLysLysCysIleArgGlnHisGlnSerLeuIle : 255 !:!||| :!!||||||! !!.!|||||| ! ! !|||||||||||||||!:!|||||| PheAlaThrGluCysTyrAsnValLeuLysAspTyrIleArgGlnHisGlnAsnLeuIle 18220 : TTTGCAACAGAATGTTACAACGTTCTCAAAGATTATATCAGACAGCATCAGAACCTGATT : 18277 256 : LysPheCysGluLysLeuGluTyrValAsnThrPheProIlePheGlyHisValValVal : 275 !:!|||.!.||||||||| ! ||| !!.!.!! !:!!.!.|||!!.:!!:!!:!! AlaTyrCysAsnLysLeuGluLysValPheAsnIleIleValLeuGlyGlnLeuLeuMet 18278 : GCTTATTGCAACAAACTCGAGAAAGTGTTCAATATCATTGTTCTGGGGCAATTGTTAATG : 18337 276 : PheSerLeuLeuMetCysPheAspThrTyrGluIleLeuLeu >>>> Target Intr : 290 ||||||:!!|||!!:|||.!!||| !!:!:!!||||||:!! 975 bp PheSerMetLeuIleCysLeuAspGlyPheGlnIleLeuMet++ 18338 : TTCAGCATGTTGATCTGTCTCGATGGATTTCAGATACTTATGgt................ : 18384 291 : on 1 >>>> AlaAsnValSerThrGlyThrArgLeuIlePheValPheHisMetValG : 306 ||||||..! !!||| !!|||||||||||||||:!!||||||!!:! !! ++AlaAsnThrProThrArgThrArgLeuIlePheIlePheHisIleGlyA 18385 : .........agGCAAATACACCTACCAGAACCCGACTGATTTTCATCTTTCACATAGGAG : 19405 307 : lySerPheIleHisIleIlePhePheThrTyrThrCysHisGlyLeuIleGluGluSerS : 326 .!!!!.!. !!!.:!::!:.!.|||||||||!:!||| !! !!:!!|||..!||||||! laCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSerT 19406 : CATGCATGTGTCAATTGCTGATGTTTACCTACAGCTGCGACTGCATCATAAGAGAAAGCA : 19465 327 : erAsnIleSerLeuAlaThrTyrSerGlyTrpTrpThrIleLeuProMetThrGluThrG : 346 !!!:!! !:!! !|||..!||||||||| ||||||:!!|||||||||!:!! ! !| hrSerThrAlaGluAlaValTyrSerGlyProTrpThrLeuLeuProMetSerAlaAspG 19466 : CGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGACACTTTTACCAATGAGCGCAGACG : 19525 347 : lyArgMetLeuArgGluAspValLysValMetMetMetLysSerMetArgProCysTyrL : 366 ||!:!|||:!!|||:!!|||:!!! !:!!:!:!!:|||!:!|||! !||||||! !| lyLysMetIleArgLysAspLeuMetLeuValIleMetArgSerSerValProCysCysL 19526 : GAAAAATGATAAGGAAAGATTTGATGCTCGTTATCATGAGATCGAGCGTACCTTGTTGCT : 19585 367 : euSerAlaGlyGlyPhePheProIleSerLeuGluThrSerThrAla >>>> Target : 382 ||!!!||| !!||||||||| !:!:||||||||||||! !|||!.! 2 euThrAlaArgGlyPhePheValValSerLeuGluThrTyrThrGly++ 19586 : TGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAACGTACACAGGGgt........... : 19635 383 : Intron 2 >>>> LeuMetSerThrThrMetSerTyrPheThrLeuMetArgGluSe : 396 23 bp :!!:!:||||||.!! |||||||||||||||:!!!:!:!!!! ++ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuLysGlnAr 19636 : ..............agGTTTTAAGCACCGCAGCCTCATACTTTACGTTGCTGAAGCAAAG : 19898 397 : rSer : 397 !||| gSer 19899 : ATCA : 19903 vulgar: gi|350425896|ref|XP_003494267.1| 235 397 . KQ414828.1 18219 19903 + 397 M 54 162 5 0 2 I 0 971 3 0 2 M 92 276 5 0 2 I 0 219 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 18220 19903 397 + . gene_id 1 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 18220 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18220 18381 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19903 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19903 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 18220 19903 397 + . alignment_id 1 ; Query gi|350425896|ref|XP_003494267.1| ; Align 18220 236 162 ; Align 19357 290 276 ; Align 19856 382 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 355 Query range: 236 -> 395 Target range: 3558 -> 6459 237 : AlaAspLysCysTyrIleAlaLeuLysLysCysIleArgGlnHisGlnSerLeuIleLysPh : 257 :!!|||:!!|||||| ! !!!!|||!!.||||||!:!|||||||||:!!||||||:!!!: SerAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTy 3559 : TCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATA : 3619 258 : eCysGluLysLeuGluTyrValAsnThrPheProIlePheGlyHisValValValPheSerL : 278 !|||.!.||||||:!! ! ||| ! !.!. !:!:.!!!.!!!.|||:!!:!!||||||| rCysAsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerL 3620 : CTGTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTT : 3682 279 : euLeuMetCysPheAspThrTyrGluIleLeuLeu >>>> Target Intron 1 >>>> : 290 |||||||||||.!!||| !||| :!::!!:!! 457 bp euLeuMetCysLeuAspGlyTyr---LeuValMet++ 3683 : TGTTAATGTGCCTCGATGGATAT---TTGGTGATGgt......................... : 3717 291 : AlaAsnValSerThrGlyThrArgLeuIlePheValPheHisMetValGlySerPheIle : 309 ! !:!!..! !!! ! ! !||||||! !|||:!!||||||:!:..!|||!!!.!. ! ++GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCys 3718 : agGAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGC : 4229 310 : HisIleIlePhePheThrTyrThrCysHisGlyLeuIleGluGluSerSerAsnIleSerLe : 330 !!.:!::!:.!.|||||||||!:!||| !! !!||||||..!||||||! !|||:!::!! GlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAs 4230 : CAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAA : 4292 331 : uAlaThrTyrSerGlyTrpTrpThrIleLeuProMetThrGluThrGlyArgMetLeuArgG : 351 !|||! !|||..! !!! !|||! ! !||||||||| !..!:!!|||||||||||||||: nAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgL 4293 : TGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAA : 4355 352 : luAspValLysValMetMetMetLysSerMetArgProCysTyrLeuSerAlaGlyGlyPhe : 371 !!|||:!!! ! !!:!:!!: !:!|||! !||||||! !|||!!!||| !!|||||| ysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhe 4356 : AAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTC : 4415 372 : PheProIleSerLeuGluThrSerThrAla >>>> Target Intron 2 >>>> Leu : 382 ||||||:!:||||||||||||! !|||:!! 1970 bp :!! PheProValSerLeuGluThrTyrThrSer++ ++Val 4416 : TTCCCTGTGTCACTGGAAACGTACACTTCGgt.........................agGTT : 6418 383 : MetSerThrThrMetSerTyrPheThrLeuMetArgGlu : 395 !!:||||||.!!:!!|||||||||||||||:!:|||:!! IleSerThrAlaValSerTyrPheThrLeuLeuArgGln 6419 : ATAAGTACAGCAGTGTCGTACTTCACACTGTTAAGGCAA : 6459 vulgar: gi|350425896|ref|XP_003494267.1| 236 395 . KQ414828.1 3558 6459 + 355 M 49 147 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 3559 6459 355 + . gene_id 2 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 3559 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3559 3714 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6459 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6459 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 3559 6459 355 + . alignment_id 2 ; Query gi|350425896|ref|XP_003494267.1| ; Align 3559 237 147 ; Align 3706 287 9 ; Align 4172 290 276 ; Align 6418 382 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 258 Query range: 66 -> 188 Target range: 21894 -> 22430 67 : CysThrPheLeuLeuSerAsnThrLeuCysIleIleLeuAlaMetPheLysLeuLeuIle : 86 |||! !!:!:!! !!!!|||!:!|||..!:!::!!|||! !!!:.!!|||:!!!!!:!! CysMetTyrMetAlaCysAsnSerLeuAlaLeuValLeuAspIleIleLysIlePheVal 21895 : TGCATGTACATGGCATGCAACAGTTTAGCCCTGGTTTTGGATATAATCAAGATTTTCGTC : 21952 87 : LeuAsnPheArgArgThrGluPheLysAspLeuValLeuPheAlaGlnGlnAsnPheTrp : 106 ||| ! ! |||!:!! !:!!||| ! !|||:!! !!:! !|||:!!||||||||| LeuLeuValArgLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheTrp 21953 : CTACTCGTACGGAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTTTGG : 22012 107 : HisPheLysTyrAspHisAspGluLysIleLeuPheMetLysCysArgLysLeuCysLys : 126 |||!!.!!.||||||!!.||||||!!. !:!!.!! ! ...!:!::! !|||! HisLeuAsnTyrAspGlnAspGluAsnSerIleIleAlaHisAlaLysArgThrCysIle 22013 : CATTTGAACTACGACCAGGACGAGAATTCTATTATCGCACACGCGAAACGAACGTGCATC : 22072 127 : LeuTrpThrIleThrAlaCysSerPheThrGlnAlaSerLeuAlaPheTyrIleIleThr : 146 ! !!::..! !..! !! ! !! !:!!|||:!!!!!:!! !! !|||||||||! ! TyrPheValCysValPheSerPheCysSerGlnSerThrValPheSerTyrIleIleArg 22073 : TACTTCGTCTGCGTCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTATATAATAAGG : 22132 147 : ProIleCys{A} >>>> Target Intron 1 >>>> {la}AsnIleGlyLysAsn : 155 |||.!! {:} 170 bp {!!}|||:!!||||||||| ProPheVal{S}++ ++{er}AsnLeuGlyLysAsn 22133 : CCATTTGTA{T}gt.........................ag{ca}AATCTTGGAAAGAAT : 22329 156 : LysSerAspArgValLeuProPheLysMetTrpValAspLeuProLeuSerValThrPro : 175 :!!|||||||||! !! ! !!:! ! ||||||:!!|||||||||||||||||||||||| GluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuProLeuSerValThrPro 22330 : GAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCATTATCCGTAACAcca : 22389 176 : TyrTyrGluIleMetPheValIleGlnLeuAlaThrVal : 188 |||||||||||| ::!:!!||||||:!! ! !!:!! TyrTyrGluIleThrTyrIleIleGlnValLeuProIle 22390 : tattatgaaattacttACATAATACAGGTATTACCAATT : 22430 vulgar: gi|350425896|ref|XP_003494267.1| 66 188 . KQ414828.1 21894 22430 + 258 M 83 249 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21895 22430 258 + . gene_id 3 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 21895 22144 . + . KQ414828.1 exonerate:protein2genome:local exon 21895 22144 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22145 22146 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22145 22314 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22313 22314 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 22315 22430 . + . KQ414828.1 exonerate:protein2genome:local exon 22315 22430 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21895 22430 258 + . alignment_id 3 ; Query gi|350425896|ref|XP_003494267.1| ; Align 21895 67 249 ; Align 22317 151 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 246 Query range: 147 -> 230 Target range: 17818 -> 18177 148 : IleCysAlaAsnIleGlyLysAsnLysSerAspArgValLeuProPheLysMetTrpVal : 167 |||! ||||||||||||||||||:::|||!!:|||:!!|||||||||!!.||||||||| IleLeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpVal 17819 : ATTTTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTC : 17876 168 : AspLeuProLeuSerValThrProTyrTyrGluIleMetPheValIleGln >>>> Ta : 185 :!!||||||||||||:!!|||||||||||||||||| ||| :::||| AsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln++ 17877 : AACTTGCCATTATCAATGACGCCATATTACgaaataactttttcattaCAGgt....... : 17932 186 : rget Intron 1 >>>> LeuAlaThrValGlnGlnIleGlyValThrTyrLeuCysA : 198 110 bp ::! !:!!:!! ! !!.|||||||||!:!|||!!!||| ++ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysP 17933 : ..................aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgct : 18079 199 : snAspAsnPheLeuCysIleLeuAsnMetHisValIleCysGlnPheArgMetLeuHisA : 218 ||||||||||||||||||:!!|||:!!|||!.! ! !|||||||||:!:|||!!. heAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnT 18080 : tcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAAT : 18139 219 : snArgLeuLeuAsnLeuTrpLysIleIleAspGlnLys : 230 !!|||:!! !|||:!! ! :!!! |||:::::: yrArgMetAlaAsnMetThrAspLeuLysAspLysGlu 18140 : ACCGAATGGCGAATATGACCGATTTAAAGGacaaagag : 18177 vulgar: gi|350425896|ref|XP_003494267.1| 147 230 . KQ414828.1 17818 18177 + 246 M 37 111 5 0 2 I 0 106 3 0 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17819 18177 246 + . gene_id 4 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17819 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17819 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18177 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18177 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17819 18177 246 + . alignment_id 4 ; Query gi|350425896|ref|XP_003494267.1| ; Align 17819 148 111 ; Align 18040 185 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 234 Query range: 289 -> 396 Target range: 12469 -> 13149 290 : AlaAsnValSerThrGlyThrArgLeuIlePheValPheHisMetValGlySerPheIle : 309 ||||||..!||| !!.!! !||| !||||||:!!|||! !!!: !|||:!!.!.:!! AlaAsnThrSerLeuAlaArgArgSerIlePheMetPheLeuIleCysGlyAlaMetVal 12470 : GCTAATACTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTT : 12527 310 : HisIleIlePhePheThrTyrThrCysHisGlyLeuIleGluGluSerSerAsnIleSer : 329 :!:.!!.!.|||||||||!:!|||:!! !:!!||||||:!!|||..!||||||:!! LeuLeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAla 12528 : TTATTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCT : 12587 330 : LeuAlaThrTyrSerGlyTrpTrpThrIleLeuProMetThrGluThrGlyArgMetLeu : 349 !!!|||.!!||||||!.! |||||| !:!!||||||!.!:!!||||||!:!! !||| PheAlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeu 12588 : TTTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTA : 12647 350 : ArgGluAspValLysValMetMetMetLysSerMetArgProCysTyrLeuSerAlaGly : 369 |||.!.|||:!!! !:!!:!:!!: !!:!|||! ||| !|||! !|||!!!|||..! ArgHisAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsn 12648 : CGGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAAT : 12707 370 : GlyPhePheProIleSerLeuGluThrSerThr--{A} >>>> Target Intron 1 : 381 ||||||||||||:!:||||||||||||! !|||##{!} 357 bp GlyPhePheProValSerLeuGluThrTyrThr##{G}++ 12708 : GGATTTTTCCCTGTGTCCTTAGAAACTTATACTAC{G}gt.................... : 12748 382 : >>>> {la}LeuMetSerThrThrMetSerTyrPheThrLeuMetArgGluSer : 396 { !}::::::||||||.!! !|||||||||||||||:!!|||.!.!:! +-{lu}IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsn 12749 : .....ac{ag}attttgAGTACCGCGGCGTCGTACTTCACATTATTGAGAAATAAC : 13149 vulgar: gi|350425896|ref|XP_003494267.1| 289 396 . KQ414828.1 12469 13149 + 234 M 91 273 F 0 2 S 0 1 5 0 2 I 0 353 3 0 2 S 1 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 12470 13149 234 + . gene_id 5 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 12470 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12745 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13102 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 13101 13102 . + . intron_id 0 ; splice_site "ac" KQ414828.1 exonerate:protein2genome:local cds 13103 13149 . + . KQ414828.1 exonerate:protein2genome:local exon 13103 13149 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 12470 13149 234 + . alignment_id 5 ; Query gi|350425896|ref|XP_003494267.1| ; Align 12470 290 273 ; Align 13105 382 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 232 Query range: 149 -> 223 Target range: 2879 -> 3507 150 : AlaAsnIleGlyLysAsnLysSerAspArgValLeuProPheLysMetTrpValAspLeuPr : 170 |||!::||||||||||||:::|||||||||:!!||| ! !!!!..!.|||:!!|||||||| AlaSerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuPr 2880 : GCAAgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCC : 2940 171 : oLeuSerValThrProTyrTyrGluIleMetPheValIleGln >>>> Target Intro : 185 |:!!!!!:!!||||||||||||||||||:::|||...|||||| 406 bp oIleThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2941 : GATAACCATCACACCATactatgaaatattatttacgaTACAGgt................. : 2987 186 : n 1 >>>> LeuAlaThrValGlnGlnIleGlyValThrTyrLeuCysAsnAspAsnPheL : 202 :!! !! !:!!..! ! :!! !!:!!!:!|||||||||! !|||||||||| ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheL 2988 : ........agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTC : 3442 203 : euCysIleLeuAsnMetHisValIleCysGlnPheArgMetLeuHisAsnArgLeuLeuAsn : 222 |||||!!::!!|||:!:|||..! ! !|||||||||!!:|||!!. !!||||||! !||| euCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsn 3443 : TGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAAT : 3502 223 : Leu : 223 :!! Val 3503 : GTG : 3507 vulgar: gi|350425896|ref|XP_003494267.1| 149 223 . KQ414828.1 2879 3507 + 232 M 35 105 5 0 2 I 0 402 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2880 3507 232 + . gene_id 6 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2880 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2880 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3507 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3507 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2880 3507 232 + . alignment_id 6 ; Query gi|350425896|ref|XP_003494267.1| ; Align 2880 150 105 ; Align 3391 185 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 235 -> 292 Target range: 32975 -> 33146 236 : TyrAlaAspLysCysTyrIleAlaLeuLysLysCysIleArgGlnHisGlnSerLeuIle : 255 |||:!!!!:|||||||||||| !!!!|||!!.||||||!:!|||||||||:!!|||||| TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 32976 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTaatt : 33033 256 : LysPheCysGluLysLeuGluTyrValAsnThrPheProIlePheGlyHisValValVal : 275 :::||||||||| |||||| ! ||| !||| ! !:!!.!!|||!!.|||:!!:!! GluPheCysGluIleLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMet 33034 : gaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTAATG : 33093 276 : PheSerLeuLeuMetCysPheAspThrTyrGluIleLeuLeuAlaAsnVal : 292 ||||||:!!:!!!!:||||||! ! !||||||:!!||||||!.!!:!:!! PheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeuValSerIle 33094 : TTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGGTGAGTATC : 33146 vulgar: gi|350425896|ref|XP_003494267.1| 235 292 . KQ414828.1 32975 33146 + 175 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32976 33146 175 + . gene_id 7 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 32976 33146 . + . KQ414828.1 exonerate:protein2genome:local exon 32976 33146 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32976 33146 175 + . alignment_id 7 ; Query gi|350425896|ref|XP_003494267.1| ; Align 32976 236 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 163 Query range: 235 -> 292 Target range: 38039 -> 38210 236 : TyrAlaAspLysCysTyrIleAlaLeuLysLysCysIleArgGlnHisGlnSerLeuIle : 255 |||:!!!!:|||||||||||| !!!!|||!!.||||||!:!|||||||||:!!|||||| TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 38040 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATT : 38097 256 : LysPheCysGluLysLeuGluTyrValAsnThrPheProIlePheGlyHisValValVal : 275 :!!||||||! !! !|||||| ! ||| !||| ! ! !.!!|||!!.|||:!!:!! GluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnValLeuMet 38098 : GAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCTAATG : 38157 276 : PheSerLeuLeuMetCysPheAspThrTyrGluIleLeuLeuAlaAsnVal : 292 ||||||:!!|||!!:||||||! !..!|||:!! !||||||!.!!:!:!! PheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeuValSerIle 38158 : TTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGGTGAGTATC : 38210 vulgar: gi|350425896|ref|XP_003494267.1| 235 292 . KQ414828.1 38039 38210 + 163 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38040 38210 163 + . gene_id 8 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38040 38210 . + . KQ414828.1 exonerate:protein2genome:local exon 38040 38210 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38040 38210 163 + . alignment_id 8 ; Query gi|350425896|ref|XP_003494267.1| ; Align 38040 236 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 235 -> 294 Target range: 22896 -> 23073 236 : TyrAlaAspLysCysTyrIleAlaLeuLysLysCysIleArgGlnHisGlnSerLeuIle : 255 |||:!!!!:|||||||||||| !!!!|||!!.||||||!:!|||||||||:!!|||||| TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 22897 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATT : 22954 256 : LysPheCysGluLysLeuGluTyrValAsnThrPheProIlePheGlyHisValValVal : 275 :!!||||||! !! !|||||| ! ||| !||| ! !:!!.!!|||!!.|||:!!:!! GluPheCysAlaThrLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMet 22955 : GAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCTAATG : 23014 276 : PheSerLeuLeuMetCysPheAspThrTyrGluIleLeuLeuAlaAsnValSerThr : 294 ! !|||:!!|||!!:|||||| ! !|||:!!:!!||||||!.!!:!:!!..!!:! SerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeuValSerIleGluSer 23015 : TCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGGTGAGTATCGAAAGC : 23073 vulgar: gi|350425896|ref|XP_003494267.1| 235 294 . KQ414828.1 22896 23073 + 162 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22897 23073 162 + . gene_id 9 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 22897 23073 . + . KQ414828.1 exonerate:protein2genome:local exon 22897 23073 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22897 23073 162 + . alignment_id 9 ; Query gi|350425896|ref|XP_003494267.1| ; Align 22897 236 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 7 -> 82 Target range: 15121 -> 16878 8 : AspIleSerIleThrLeuSerGlnPheLeuLeuLysLeuAlaGlyValTrpMetThrVal : 27 ||||||||||||!:!|||!!!... !!!!!:!!|||:!!!.!|||:!!||||||.!! ! AspIleSerIleSerLeuThrSerValPheMetLysIleValGlyLeuTrpMetAlaSer 15122 : GACATATCAATCAGCCTGACGTCCGTTTTCATGAAGATCGTTGGACTGTGGATGGCGTCG : 15179 28 : AsnAsnAlaGluGluArgArgArgArgLeuThrMetAlaPheThrAlaValIleHisVal : 47 |||..! !|||:!!||| !|||!.!:!!|||:!!..!!:!||| !:!! !:!! AsnArgPheGluGlnArgValArgAsnIleThrLeuCysTyrThrLeuIleAlaIleLeu 15180 : AACCGTTTCGAGCAACGAGTACGAAATATCACGCTGTGTTACACGCTGATCGCGATTCTC : 15239 48 : TyrGlyLeuTyrLeuAsnLeuGlyAspAlaTyrTyrThrTrpAsnAspLeuSer >>>> : 66 !:!!.!|||!:::!!.!.:!! !||| !||||||:!!|||...|||!!!.!! PheAlaLeuTrpIleGlnMetThrAspLeuTyrTyrSerTrpGlyAspPheGly++ 15240 : TTCGCCCTGTGGATACAAATGACGGATTTGTATTACTCGTGGGGAGATTTTGGTgt.... : 15298 67 : Target Intron 1 >>>> HisCysThrPheLeuLeuSerAsnThrLeuCysIleI : 78 1532 bp :!! !!! ...||||||||| ||||||||||||: +-AsnArgLysLeuLeuLeuSerLeuThrLeuCysIleL 15299 : .....................aaAATCGTAAactccttctttctttaacACTCTGTATAC : 16864 79 : leLeuAlaMetPhe : 82 !!||| ! ||| euLeuIleGluPhe 16865 : TTTTAATTGAATTC : 16878 vulgar: gi|350425896|ref|XP_003494267.1| 7 82 . KQ414828.1 15121 16878 + 143 M 58 174 5 0 2 I 0 1528 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15122 16878 143 + . gene_id 10 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 15122 15295 . + . KQ414828.1 exonerate:protein2genome:local exon 15122 15295 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 15296 15297 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 15296 16827 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 16826 16827 . + . intron_id 0 ; splice_site "AA" KQ414828.1 exonerate:protein2genome:local cds 16828 16878 . + . KQ414828.1 exonerate:protein2genome:local exon 16828 16878 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15122 16878 143 + . alignment_id 10 ; Query gi|350425896|ref|XP_003494267.1| ; Align 15122 8 174 ; Align 16828 66 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 63 -> 148 Target range: 26918 -> 27173 64 : LeuSerHisCysThrPheLeuLeuSerAsnThrLeuCysIleIleLeuAlaMetPheLys : 83 |||..! !|||! !!:!:!! !.!!||| !|||..!!!::!!|||! !!!:.!!||| LeuGlnValCysMetTyrMetAlaGlyAsnGlyLeuAlaMetValLeuAspIleIleLys 26919 : ctacaGGTTTGCATGTACATGGCTGGCAACGGTTTAGCCATGGTTTTGGATATAATCAAG : 26976 84 : LeuLeuIleLeuAsnPheArgArgThrGluPheLysAspLeuValLeuPheAlaGlnGln : 103 :!!!!!! !||| ! ! !.!!:!! !:!!||| ! !|||:!! !!:! !|||:!! IlePheThrLeuValValHisLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLys 26977 : ATTTTCACCCTAGTCGTACACAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAG : 27036 104 : AsnPheTrpHisPheLysTyrAspHisAspGluLysIleLeuPheMetLysCysArgLys : 123 ||||||||||||!!.!!.||||||!!. !!|||!!. !:!!!!. :!!...!:!::! AsnPheTrpHisLeuAsnTyrAspGlnTyrGluAsnSerValLeuAlaGlnAlaLysArg 27037 : AATTTTTGGCATTTGAACTACGATCAGTACGAGAATTCTGTTTTGGCACAGGCGAAACGA : 27096 124 : LeuCysLysLeuTrpThrIleThrAlaCysSerPheThrGlnAlaSerLeuAlaPheTyr : 143 :!!|||! ! !!::..! ... |||:::|||:::|||:!! !! !||| MetCysIleTyrPheValCysValLeuSerPhePheSerGlnSerSerValLeuSerTyr 27097 : ATGTGCATTTACTTCGTGTGcgttttgtcatttttttctcaatctTCAGTTCTTTCCTAT : 27156 144 : IleIleThrProIle : 148 ||||||! !|||:!! IleIleArgProLeu 27157 : ATCATAAGGCCACTT : 27173 vulgar: gi|350425896|ref|XP_003494267.1| 63 148 . KQ414828.1 26918 27173 + 141 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26919 27173 141 + . gene_id 11 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 26919 27173 . + . KQ414828.1 exonerate:protein2genome:local exon 26919 27173 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 26919 27173 141 + . alignment_id 11 ; Query gi|350425896|ref|XP_003494267.1| ; Align 26919 64 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 147 -> 188 Target range: 32386 -> 32509 148 : IleCysAlaAsnIleGlyLysAsnLysSerAspArgValLeuProPheLysMetTrpVal : 167 ||| ||||||:!!|||||||||:!!|||||||||! !! ! !!:! ! ||||||:!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 32387 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 32444 168 : AspLeuProLeuSerValThrProTyrTyrGluIleMetPheValIleGlnLeuAlaThr : 187 |||||||||||||||||||||||||||||||||||| ::!:!!||||||:!! ! !! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 32445 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 32504 188 : Val : 188 :!! Ile 32505 : ATT : 32509 vulgar: gi|350425896|ref|XP_003494267.1| 147 188 . KQ414828.1 32386 32509 + 139 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32387 32509 139 + . gene_id 12 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 32387 32509 . + . KQ414828.1 exonerate:protein2genome:local exon 32387 32509 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32387 32509 139 + . alignment_id 12 ; Query gi|350425896|ref|XP_003494267.1| ; Align 32387 148 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 147 -> 188 Target range: 37450 -> 37573 148 : IleCysAlaAsnIleGlyLysAsnLysSerAspArgValLeuProPheLysMetTrpVal : 167 ||| ||||||:!!|||||||||:!!|||||||||! !! ! !!:! ! ||||||:!! IleSerAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 37451 : atttcagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 37508 168 : AspLeuProLeuSerValThrProTyrTyrGluIleMetPheValIleGlnLeuAlaThr : 187 |||||||||||||||:!!|||||||||||||||||| ::!:!!||||||:!! ! !! AspLeuProLeuSerIleThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 37509 : GATCTACCATTATCCATAACAccatattatgaaattacttACATAATACAGGTATTACCA : 37568 188 : Val : 188 :!! Ile 37569 : ATT : 37573 vulgar: gi|350425896|ref|XP_003494267.1| 147 188 . KQ414828.1 37450 37573 + 138 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37451 37573 138 + . gene_id 13 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37451 37573 . + . KQ414828.1 exonerate:protein2genome:local exon 37451 37573 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37451 37573 138 + . alignment_id 13 ; Query gi|350425896|ref|XP_003494267.1| ; Align 37451 148 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 149 -> 188 Target range: 27345 -> 27462 150 : AlaAsnIleGlyLysAsnLysSerAspArgValLeuProPheLysMetTrpValAspLeu : 169 ||||||:!!|||||||||:!!|||||||||! !! ! !||| ! |||||| !!|||||| AlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPheAspLeu 27346 : gcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTCGATCTA : 27403 170 : ProLeuSerValThrProTyrTyrGluIleMetPheValIleGlnLeuAlaThrVal : 188 |||||||||||||||||||||||||||||| ::!:!!||||||:!! ! !!:!! ProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuProIle 27404 : CCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCAATT : 27462 vulgar: gi|350425896|ref|XP_003494267.1| 149 188 . KQ414828.1 27345 27462 + 137 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27346 27462 137 + . gene_id 14 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27346 27462 . + . KQ414828.1 exonerate:protein2genome:local exon 27346 27462 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27346 27462 137 + . alignment_id 14 ; Query gi|350425896|ref|XP_003494267.1| ; Align 27346 150 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 234 -> 293 Target range: 10999 -> 11176 235 : AspTyrAlaAspLysCysTyrIleAlaLeuLysLysCysIleArgGlnHisGlnSerLeu : 254 |||! !.!! !!:!! !||| !!!!|||!..! !:!!||||||||||||!!!||| AspCysThrArgArgSerTyrGluLysPheLysSerTyrValArgGlnHisGlnThrLeu 11000 : GACTGTACACGTAGATCTTACGAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTG : 11057 255 : IleLysPheCysGluLysLeuGluTyrValAsnThrPheProIlePheGlyHisValVal : 274 ||| ! !:!! !||||||||||||:!!||| !!||| !|||.!!|||!!.|||:!! IleAspTyrTyrGluLysLeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeu 11058 : ATCGATTATTACGAGAAGCTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTA : 11117 275 : ValPheSerLeuLeuMetCysPheAspThrTyrGluIleLeuLeuAlaAsnValSer : 293 :!!||||||:!!|||!!:|||.!! ! !|||:!!|||||||||!.!!:!:!!||| LeuPheSerValLeuIleCysLeuPheGlyTyrGlnIleLeuLeuValSerIleSer 11118 : CTGTTCAGTGTGTTAATTTGCCTCTTTGGTTATCAGATATTATTGGTTAGTATTTCA : 11176 vulgar: gi|350425896|ref|XP_003494267.1| 234 293 . KQ414828.1 10999 11176 + 131 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 11000 11176 131 + . gene_id 15 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 11000 11176 . + . KQ414828.1 exonerate:protein2genome:local exon 11000 11176 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 11000 11176 131 + . alignment_id 15 ; Query gi|350425896|ref|XP_003494267.1| ; Align 11000 235 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 153 -> 188 Target range: 9337 -> 9442 154 : LysAsnLysSerAspArgValLeuProPheLysMetTrpValAspLeuProLeuSerValTh : 174 !..|||||||||!!:|||!.!!!!! !||| ! ||||||:!!:!!|||||||||!!!|||:! SerAsnLysSerGluArgAlaPheLeuPheAspMetTrpLeuAsnLeuProLeuThrValSe 9338 : AGCAACAAATCTGAAAGAGCGTTTCTGTTCGACATGTGGCTCAATTTACCTCTGACTGTTTC : 9398 175 : rProTyrTyrGluIleMetPheValIleGlnLeuAlaThrVal : 188 !|||||||||||| !|||!!.!.!:!!|||:!! ! ||| rProTyrTyrGluGlyMetLeuAlaValGlnValPheProVal 9399 : GCCTTACTACGAAGGAATGTTGGCTGTACAGGTATTTCcagtt : 9442 vulgar: gi|350425896|ref|XP_003494267.1| 153 188 . KQ414828.1 9337 9442 + 100 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 9338 9442 100 + . gene_id 16 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 9338 9442 . + . KQ414828.1 exonerate:protein2genome:local exon 9338 9442 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 9338 9442 100 + . alignment_id 16 ; Query gi|350425896|ref|XP_003494267.1| ; Align 9338 154 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1557 Query range: 0 -> 405 Target range: 15100 -> 19900 1 : MetSerPheIleLysThrAspAspIleSerValArgLeuThrSerValPheMetLysLeu : 20 |||||| !.!!! |||||||||||||||:!!!!!|||||||||||||||||||||:!! MetSerSerPheThrThrAspAspIleSerIleSerLeuThrSerValPheMetLysIle 15101 : ATGAGTAGTTTCACCACCGATGACATATCAATCAGCCTGACGTCCGTTTTCATGAAGATC : 15158 21 : ValGlyLeuTrpMetAlaThrGluArgSerGluGlnArgIleArgAsnIleThrValGly : 40 ||||||||||||||||||:!!.!.|||! !|||||||||:!!||||||||||||:!! !! ValGlyLeuTrpMetAlaSerAsnArgPheGluGlnArgValArgAsnIleThrLeuCys 15159 : GTTGGACTGTGGATGGCGTCGAACCGTTTCGAGCAACGAGTACGAAATATCACGCTGTGT : 15218 41 : TyrThrLeuValAlaIleMetPheAlaMetTrpLeuGlnThrThrAspMetTyrTyrSer : 60 |||||||||:!!||||||:!:||||||:!!|||:!!|||! !||||||:!!||||||||| TyrThrLeuIleAlaIleLeuPheAlaLeuTrpIleGlnMetThrAspLeuTyrTyrSer 15219 : TACACGCTGATCGCGATTCTCTTCGCCCTGTGGATACAAATGACGGATTTGTATTACTCG : 15278 61 : TrpGlyAspPheSer >>>> Target Intron 1 >>>> AlaCysLeuPheAspA : 71 ||||||||||||.!! 891 bp |||||||||!:! !| TrpGlyAspPheGly++ ++AlaCysLeuTyrThrA 15279 : TGGGGAGATTTTGGTgt.........................agGCCTGTTTATATACTG : 16202 72 : laCysAsnIleLeuSerLeuThrMetProPheIleLysIleLeuValLeuLeuAlaHisL : 91 |||||||||||||||||||||||!!:||||||:!!||||||||||||||||||||||||| laCysAsnIleLeuSerLeuThrIleProPheLeuLysIleLeuValLeuLeuAlaHisL 16203 : CATGCAACATTTTATCGTTAACAATACCGTTTCTCAAGATACTCGTCTTGCTTGCAcaca : 16262 92 : ysGluAspPhePheArgLeuIlePheTyrLeuGlnArgLysPheLeuHisGlyAsnTyrA : 111 ||...|||||||||...||||||.!.:!!|||||||||:!!|||||||||!.!:!!|||: ysAsnAspPhePheHisLeuIleLeuHisLeuGlnArgGluPheLeuHisAlaAspTyrA 16263 : aaaatgatttttttcatttgattcTGCACCTACAACGAGAATTCTTGCATGCAGATTACG : 16322 112 : snAspTyrGluArgLysIleValIleSerCysLysArgLysCysThrPhePheIleCysP : 131 !!|||||||||!:!||||||:!!:!!.!!|||:!!|||:!!||||||||||||:!!|||| spAspTyrGluLysLysIleLeuLeuGlyCysGlnArgGlnCysThrPhePheValCysP 16323 : ACGACTACGAGAAAAAGATTTTGCTCGGTTGCCAACGTCAATGTACCTTCTTCGTTTGTT : 16382 132 : hePheThrLeuPheThrLeuAlaThrValAlaSerTyrIleIleAsnProLeuVal{A} : 150 ||||||||||||||||| !!.!|||||| !|||||||||:!!|||||||||:!!{|} hePheThrLeuPheThrLysGlyThrValIleSerTyrIleValAsnProLeuIle{A}+ 16383 : TCTTCACACTTTTCACTAAAGGAACTGTTATCTCGTACATCGTTAATCCGCTTATT{G}g : 16440 151 : >>>> Target Intron 2 >>>> {la}AsnIleGlyArgAsnGluSerAspArgV : 160 1386 bp {||}|||||||||:::|||||||||!!:|||: + ++{la}AsnIleGlyLysAsnGluSerGluArgI 16441 : t.........................ag{ca}aatattggaaaaaatgagTCAGAGAGGA : 17855 161 : alLeuProPheAsnMetTrpIleAspLeuProLeuThrValThrProTyrTyrGluIleI : 180 !!||||||||||||||||||:!!:!!|||||||||:!!:!!|||||||||||||||||| leLeuProPheAsnMetTrpValAsnLeuProLeuSerMetThrProTyrTyrGluIleT 17856 : TACTTCCATTTAATATGTGGGTCAACTTGCCATTATCAATGACGCCATATTACgaaataa : 17915 181 : lePheValLeuGln >>>> Target Intron 3 >>>> ValLeuSerLeuTyrHi : 190 ||| |||||| 110 bp ||||||||||||||||| hrPheSerLeuGln++ ++ValLeuSerLeuTyrHi 17916 : ctttttcattaCAGgt.........................aggtTCTGTCTCTGTACCA : 18055 191 : sIleGlyIleSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAl : 210 |||||||:!:|||||||||||||||||||||||||||||||||||||||||||||!.!|| sIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisAlaAl 18056 : TATTGGCGTGAGTTATTTCTgcttcgacaattttttatgcatCATGAACTTGCACGCGGC : 18115 211 : aGlyGlnPheArgValLeuGlnTyrArgIleAlaAsnMetProAspLeuMetAspLysVa : 230 | !||||||||||||||||||||||||!!:||||||||| !!||||||! !|||||| aThrGlnPheArgValLeuGlnTyrArgMetAlaAsnMetThrAspLeuLysAspLysGl 18116 : TACTCAGTTTCGAGTATTGCAATACCGAATGGCGAATATGACCGATTTAAAGGacaaaga : 18175 231 : lLysGlnSerGlyAspLysIleLeuAsnThrGlySerSerCysLeuAlaAsnGluCysTy : 250 ::::::... ::: !!:!..!.!!|||:!!|||!!!|||!..|||||||| uArgLysGluArgAsnMetLysThrSerValSerSerAlaCysPheAlaThrGluCysTy 18176 : gaggaaagagagaaatatgaAGACAAGTGTGAGTTCGGCGTGCTTTGCAACAGAATGTTA : 18235 251 : rSerIlePheLysLysTyrIleArgGlnHisGlnAlaLeuIleAlaTyrCysGlyLysLe : 270 |!:!:!!.!!||| ! |||||||||||||||||| !|||||||||||||||..!||||| rAsnValLeuLysAspTyrIleArgGlnHisGlnAsnLeuIleAlaTyrCysAsnLysLe 18236 : CAACGTTCTCAAAGATTATATCAGACAGCATCAGAACCTGATTGCTTATTGCAACAAACT : 18295 271 : uGluGluValPheSerLeuIleIleLeuGluGlnValLeuMetPheSerLeuLeuIleCy : 290 ||||:!!||||||!:!:!!|||:!!|||! !|||:!!||||||||||||:!!|||||||| uGluLysValPheAsnIleIleValLeuGlyGlnLeuLeuMetPheSerMetLeuIleCy 18296 : CGAGAAAGTGTTCAATATCATTGTTCTGGGGCAATTGTTAATGTTCAGCATGTTGATCTG : 18355 291 : sLeuAspGlyTyrGlnValLeuMet >>>> Target Intron 4 >>>> AlaAsn : 300 ||||||||||!:!|||:!!|||||| 975 bp |||||| sLeuAspGlyPheGlnIleLeuMet++ ++AlaAsn 18356 : TCTCGATGGATTTCAGATACTTATGgt.........................agGCAAAT : 19360 301 : AlaSerThrSerIleArgValIlePheIleCysHisIleLeuAlaCysLeuCysGlnLeu : 320 .!! !!|||!!!! !|||:!!|||||||||! !|||||| !||||||:!!||||||||| ThrProThrArgThrArgLeuIlePheIlePheHisIleGlyAlaCysMetCysGlnLeu 19361 : ACACCTACCAGAACCCGACTGATTTTCATCTTTCACATAGGAGCATGCATGTGTCAATTG : 19420 321 : LeuMetPheThrTyrSerCysAspCysIleIleArgGluSerAlaSerIleAlaThrAla : 340 ||||||||||||||||||||||||||||||||||||||||||.!!|||! !||| !||| LeuMetPheThrTyrSerCysAspCysIleIleArgGluSerThrSerThrAlaGluAla 19421 : CTGATGTTTACCTACAGCTGCGACTGCATCATAAGAGAAAGCACGAGCACCGCCGAGGCG : 19480 341 : AlaTyrLysGlyProTrpLeuIleLeuProMetSerThrSerGlyArgMetMetArgLys : 360 !.!|||!..||||||||| !:!!||||||||||||.!!..!|||!:!|||!!:|||||| ValTyrSerGlyProTrpThrLeuLeuProMetSerAlaAspGlyLysMetIleArgLys 19481 : GTGTACAGCGGTCCCTGGACACTTTTACCAATGAGCGCAGACGGAAAAATGATAAGGAAA : 19540 361 : AspLeuThrLeuIleIleLeuArgSerHisIleProCysCysLeuThrGlyLysGlyPhe : 380 ||||||! !|||:!!|||:!!|||||| !:!!|||||||||||||||!.!!:!|||||| AspLeuMetLeuValIleMetArgSerSerValProCysCysLeuThrAlaArgGlyPhe 19541 : GATTTGATGCTCGTTATCATGAGATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTC : 19600 381 : PheValValSerLeuGluThrTyrThrSer >>>> Target Intron 5 >>>> V : 391 |||||||||||||||||||||||||||.!! 223 bp | PheValValSerLeuGluThrTyrThrGly++ ++V 19601 : TTCGTCGTGTCTTTAGAAACGTACACAGGGgt.........................agG : 19856 392 : alLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgGlnArg : 405 |||||||||||||||||||||||||||||||||||!:!|||||| alLeuSerThrAlaAlaSerTyrPheThrLeuLeuLysGlnArg 19857 : TTTTAAGCACCGCAGCCTCATACTTTACGTTGCTGAAGCAAAGA : 19900 vulgar: gi|350425964|ref|XP_003494289.1| 0 405 . KQ414828.1 15100 19900 + 1557 M 65 195 5 0 2 I 0 887 3 0 2 M 84 252 S 0 1 5 0 2 I 0 1382 3 0 2 S 1 2 M 34 102 5 0 2 I 0 106 3 0 2 M 114 342 5 0 2 I 0 971 3 0 2 M 92 276 5 0 2 I 0 219 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15101 19900 1557 + . gene_id 1 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 15101 15295 . + . KQ414828.1 exonerate:protein2genome:local exon 15101 15295 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 15296 15297 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 15296 16186 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 16185 16186 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 16187 16439 . + . KQ414828.1 exonerate:protein2genome:local exon 16187 16439 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 16440 16441 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 16440 17825 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 17824 17825 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 17826 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17826 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 2 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18381 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19900 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19900 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15101 19900 1557 + . alignment_id 1 ; Query gi|350425964|ref|XP_003494289.1| ; Align 15101 1 195 ; Align 16187 66 252 ; Align 17828 151 102 ; Align 18040 185 342 ; Align 19357 299 276 ; Align 19856 391 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1012 Query range: 7 -> 405 Target range: 727 -> 6462 8 : AspIleSerValArgLeuThrSerValPheMetLysLeuValGlyLeuTrpMetAlaThrGl : 28 ||||||:!!|||! !:!!|||:!! !!!:!:!!|||:!!:!!|||!!!|||:!:||| ! AspIleAlaValThrValThrAlaPheTyrLeuLysIleIleGlyPheTrpLeuAlaAspTh 728 : GACATAGCGGTGACCGTTACGGCTTTCTACTTGAAAATTATCGGCTTCTGGTTAGCTGACAC : 788 29 : uArgSerGluGlnArgIleArgAsnIleThrValGlyTyrThrLeuValAlaIleMetPheA : 49 !..!|||:!:||| |||......... !..!!:!|||:!! !! !:!::!!! !| rTyrGluGluLysArgArgArgLysPheAlaGlnAsnPheThrIlePheMetLeuValCysA 789 : TTACGAGGAGAAacgtcgaagaaaattcgcgcAGAATTTCACGATATTTATGCTGGTGTGCG : 851 50 : laMetTrpLeuGlnThrThrAspMetTyrTyrSerTrpGlyAspPheSer >>>> Targe : 66 ||:!! :!!:!!|||! !|||!!:||||||!!!||||||||||||||| 1 laValValIleGluThrArgAspIleTyrTyrThrTrpGlyAspPheSer++ 852 : CTGTGGTAATTGAGACGAGGGATATCTATTACACCTGGGGTGATTTCAGCgt.......... : 904 67 : t Intron 1 >>>> AlaCysLeuPheAspAlaCysAsnIleLeuSerLeuThrMetPro : 80 408 bp ! !:!!!:! !||||||||||||!!!||| !!!: ! ++IleValValTyrIleMetCysAsnIleLeuThrLeuGlyIleSer 905 : ...............agATCGTTGTATACATAATGTGCAACATTCTAACACTGGGCATAAGT : 2352 81 : PheIleLysIleLeuValLeuLeuAlaHisLysGluAspPhePheArgLeuIlePheTyrLe : 101 !!..!!||||||!!!:!!! !:!! ! !|||:!! ! .........|||||| ::: LeuPheLysIlePheLeuSerMetTrpSerLysLysLysLeuLeuGluLeuIleLysPheAl 2353 : TTGTTCAAGATCTTTCTCTCGATGTGGAGTAAGAAAAAACttttggaattaattaaattcgc : 2415 102 : uGlnArgLysPheLeuHisGlyAsnTyrAsnAspTyrGluArgLysIleValIleSerCysL : 122 ::!! !!!.|||! !|||..!:!!|||:!!... ! |||!:!! ||||||! !..!|||| aArgThrAsnPheTrpHisSerAspTyrAspSerGlnGluGlnIleIleValAsnGluCysL 2416 : cAGAACGAATTTCTGGCATTCGGATTATGACTCGCAGGAGCAAATTATTGTGAACGAGTGTA : 2478 123 : ysArgLysCysThrPhePheIleCysPhePheThrLeuPheThrLeuAlaThrValAlaSer : 142 |||||! |||||||||.!!|||||| ! |||!.!!!!|||.!! !!.!||||||:!!.!! ysArgThrCysThrPheLeuIleCysValPheAsnPhePheAlaAsnGlyThrValSerGly 2479 : AACGCACTTGTACATTCCTTATATGCGTGTTTAATTTCTTCGCTAATGGGACAGTGTCTGGA : 2538 143 : TyrIleIleAsnProLeuVal{A} >>>> Target Intron 2 >>>> {la}AsnIl : 152 |||||||||!..|||:!!|||{|} 318 bp {||}!::|| TyrIleIleArgProIleVal{A}++ ++{la}SerIl 2539 : TACATAATCAGGCCAATTGTA{G}gt.........................ag{CA}Agtat : 2886 153 : eGlyArgAsnGluSerAspArgValLeuProPheAsnMetTrpIleAspLeuProLeuThrV : 173 ||||:::|||||||||||||||:!!||| ! !!|||.!.|||||||||||||||:!!|||: eGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuProIleThrI 2887 : tggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCCGATAACCA : 2949 174 : alThrProTyrTyrGluIleIlePheValLeuGln >>>> Target Intron 3 >>>> : 185 !!||||||||||||||||||:::|||...:!!||| 406 bp leThrProTyrTyrGluIleLeuPheThrIleGln++ 2950 : TCACACCATactatgaaatattatttacgaTACAGgt......................... : 2987 186 : ValLeuSerLeuTyrHisIleGlyIleSerTyrPheCysPheAspAsnPheLeuCysIle : 204 :!!!!!! !:!! :!!:!! !!|||||||||.!!|||.!!|||||||||||||||!!: ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheLeuCysMet 2988 : agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTCTGTGCATG : 3448 205 : MetAsnLeuHisValAlaGlyGlnPheArgValLeuGlnTyrArgIleAlaAsnMetProAs : 225 !!:|||||||||..!||| !|||||||||:!!||||||||||||:!::!!|||:!! !! IleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnValCysGl 3449 : ATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGG : 3511 226 : pLeuMetAspLysValLysGlnSerGlyAspLysIleLeuAsnThrGlySerSerCysLeuA : 246 ! !! !!:::: ::: ... ||| ! !::!!.!..!..!..!||| yAlaAsnGluArgSerAspLysIleSerLysLysThrProSerAsnSerAspGluCys---- 3512 : TGCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATGC---- : 3571 247 : laAsnGluCysTyrSerIlePheLysLysTyrIleArgGlnHisGlnAlaLeuIleAlaTyr : 266 |||:!!! ||||||!!.! !|||!:!||||||||||||||||||! !||| -----------TyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyr 3572 : -----------TACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATAC : 3619 267 : CysGlyLysLeuGluGluValPheSerLeuIleIleLeuGluGlnValLeuMetPheSerLe : 287 |||..!||||||:!!|||||||||.!!:!!.!!:!:|||! !|||||||||:!:|||||||| CysAsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLe 3620 : TGTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTT : 3682 288 : uLeuIleCysLeuAspGlyTyrGlnValLeuMet >>>> Target Intron 4 >>>> : 299 ||||!!:||||||||||||||| :!!:!!||| 457 bp uLeuMetCysLeuAspGlyTyr---LeuValMet++ + 3683 : GTTAATGTGCCTCGATGGATAT---TTGGTGATGgt.........................a : 4170 300 : AlaAsnAlaSerThrSerIleArgValIlePheIleCysHisIleLeuAlaCysLeuCysG : 319 ! !:!!.!! !!! !! ! |||:!!! !|||:!:! !|||:!! !!.!|||||||||| +GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysG 4171 : gGAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCC : 4232 320 : lnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSerAlaSerIleAlaThr : 339 ||||||||||||||||||||||||||||||||:!:|||||||||||| !!:!:!:|||!.! lnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsn 4233 : AACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAAT : 4292 340 : AlaAlaTyrLysGlyProTrpLeuIleLeuProMetSerThrSerGlyArgMetMetArgLy : 360 ||| !||| ! !! !!|||:!! !|||||||||..!! !||||||||||||:!!||||| AlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLy 4293 : GCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAA : 4355 361 : sAspLeuThrLeuIleIleLeuArgSerHisIleProCysCysLeuThrGlyLysGlyPheP : 381 ||||||||||!!!:!!||| !||||||...:!!|||||||||||||||!.! ||||||| sAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPheP 4356 : AGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCT : 4418 382 : heValValSerLeuGluThrTyrThrSer >>>> Target Intron 5 >>>> ValL : 392 || !|||||||||||||||||||||||| 1970 bp |||: heProValSerLeuGluThrTyrThrSer++ ++ValI 4419 : TCCCTGTGTCACTGGAAACGTACACTTCGgt.........................agGTTA : 6421 393 : euSerThrAlaAlaSerTyrPheThrLeuLeuArgGlnArg : 405 !!|||||||||!.!||||||||||||||||||||||||||| leSerThrAlaValSerTyrPheThrLeuLeuArgGlnArg 6422 : TAAGTACAGCAGTGTCGTACTTCACACTGTTAAGGCAACGT : 6462 vulgar: gi|350425964|ref|XP_003494289.1| 7 405 . KQ414828.1 727 6462 + 1012 M 58 174 5 0 2 I 0 1404 3 0 2 M 84 252 S 0 1 5 0 2 I 0 314 3 0 2 S 1 2 M 34 102 5 0 2 I 0 402 3 0 2 M 60 180 G 5 0 M 45 135 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 728 6462 1012 + . gene_id 2 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 728 901 . + . KQ414828.1 exonerate:protein2genome:local exon 728 901 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 902 903 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 902 2309 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 2308 2309 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 2310 2562 . + . KQ414828.1 exonerate:protein2genome:local exon 2310 2562 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2563 2564 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 2563 2880 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 2879 2880 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 2881 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2881 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 3 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 0 ; deletions 6 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6462 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6462 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 728 6462 1012 + . alignment_id 2 ; Query gi|350425964|ref|XP_003494289.1| ; Align 728 8 174 ; Align 2310 66 252 ; Align 2883 151 102 ; Align 3391 185 180 ; Align 3571 250 135 ; Align 3706 296 9 ; Align 4172 299 276 ; Align 6418 391 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 958 Query range: 0 -> 404 Target range: 31105 -> 34301 1 : MetSerPheIleLysThrAspAspIleSerValArgLeuThrSerValPheMetLysLeu : 20 ||||||!!.! ! ! !.!.|||:!!||| !!||||||.!!!:! !!|||:!! ! :!! MetSerLeuLysTyrArgGlnAspValSerPheArgLeuAlaAsnPhePheLeuTyrVal 31106 : ATGAGCTTGAAATATCGTCAAGACGTTTCCTTTAGATTAGCCAACTTTTTTCTGTATGTT : 31163 21 : ValGlyLeuTrpMetAlaThrGluArgSerGluGlnArgIleArgAsnIleThrValGly : 40 ||||||!!!|||.!.|||.!!.!.|||! !|||:!! !!.!!|||||| !.!!:!! ! ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeu 31164 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCTGCGATTCTG : 31223 41 : TyrThrLeuValAlaIleMetPheAlaMetTrpLeuGlnThrThrAspMetTyrTyrSer : 60 ||||||:!!|||.!!:!!.!.|||!.!|||||||||||| !! !! :!:|||!:!||| TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSer 31224 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGGCTTTATTTCTCC : 31283 61 : TrpGlyAspPheSerAla{C} >>>> Target Intron 1 >>>> {ys}Leu--- : 69 ||||||:!!|||..!!.!{ } 666 bp {!!}|||### TrpGlyAsnPheGluVal{S}++ ++{er}Leu### 31284 : TGGGGAAACTTTGAAGTA{A}gt.........................ag{GT}TTGCAT : 31977 70 : -PheAspAlaCysAsnIleLeuSerLeuThrMetProPheIleLysIleLeuValLeuLe : 88 #!:! |||||||||! !:!!:!!|||..!:!! !.!.|||||||||!!!||||||:! #TyrMetAlaCysAsnSerIleAlaLeuValLeuAspIleIleLysIlePheValLeuVa 31978 : GTACATGGCATGCAACAGTATAGCCCTGGTTTTGGATATAATCAAGATTTTCGTCCTAGT : 32037 89 : uAlaHisLysGluAspPhePheArgLeuIlePheTyrLeuGlnArgLysPheLeuHisGl : 108 !!.!!..|||:!! ! |||.!! !!|||||| |||:!:|||:::...|||...||| lValArgLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPhePheHisLe 32038 : CGTACGGAAGAAAAAGTTTCTCGGTCTGATTGAGTACATgcagaagaatttctttcattt : 32097 109 : yAsnTyrAsnAspTyrGluArgLysIleValIleSerCysLysArgLysCysThrPhePh : 128 ||||||:!!.!. !!|||!.!...|||:!! ! !...||||||! !|||! !!:!|| uAsnTyrAspGlnAspGluAsnSerIleIleAlaHisAlaLysArgThrCysIleTyrPh 32098 : gaaCTACGATCAGGACGAGAATTCTATTATCGCACACGCGAAACGAACGTGCATCTACTT : 32157 129 : eIleCysPhePheThrLeuPheThrLeuAlaThrValAlaSerTyrIleIleAsnProLe : 148 |:!!||| !!|||:!!!!!! !:!!! !:!!|||||| !||||||||||||!..|||!! eValCysValPheSerPheCysSerGlnSerThrValPheSerTyrIleIleArgProPh 32158 : CGTCTGCGTCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTATATAATAAGGCCATT : 32217 149 : uVal{A} >>>> Target Intron 2 >>>> {la}AsnIleGlyArgAsnGluSe : 157 !|||{:} 170 bp {!!}|||:!!|||!:!|||||||| eVal{S}++ ++{er}AsnLeuGlyLysAsnGluSe 32218 : TGTA{T}gt.........................ag{ca}AATCTTGGAAAGAATGAATC : 32414 158 : rAspArgValLeuProPheAsnMetTrpIleAspLeuProLeuThrValThrProTyrTy : 177 |||||||! !! ! !!:!:!!||||||:!!||||||||||||:!!|||||||||||||| rAspArgGluHisIleTyrAspMetTrpLeuAspLeuProLeuSerValThrProTyrTy 32415 : TGATAGAGAACATATATACGATATGTGGCTCGATCTACCATTATCCGTAACAccatatta : 32474 178 : rGluIleIlePheValLeuGln >>>> Target Intron 3 >>>> ValLeuSer : 187 ||||||| ::!:!!:!!||| 307 bp !.!|||||| rGluIleThrTyrIleIleGln++ ++AlaLeuSer 32475 : tgaaattacttACATAATACAGgt.........................agGCTTTATCT : 32811 188 : LeuTyrHisIleGlyIleSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeu : 207 :!!|||!!.:!!|||:!:!!!|||.!!||||||||||||...... |||||| !||| ValTyrGlnValGlyValCysTyrLeuCysPheAspAsnIlePhePheIleMetCysLeu 32812 : GTGTACCAAGTTGGAGTGTGTTACCTTTGCTttgataacatttttttcattatgtgTCTA : 32871 208 : HisValAlaGlyGlnPheArgValLeuGlnTyrArgIleAlaAsnMetProAspLeuMet : 227 |||||||||||||||||||||:!!|||||||||||||||||||||:!! !!! !|||! HisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSer 32872 : CACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGC : 32931 228 : AspLysValLysGlnSerGlyAspLysIleLeuAsnThrGlySerSerCysLeuAlaAsn : 247 !!:! !||||||...!:!! !:!! !..!:! !:!!..!! ! !:!!.!. GluIleValLysSerAsnAspAsn---------ThrSerThrAlaGluLeuTyrSerGlu 32932 : GAGATAGTGAAGAGCAATGATAAT---------ACAAGCACGGCTGAATTATACTCAGAG : 32982 248 : GluCysTyrSerIlePheLysLysTyrIleArgGlnHisGlnAlaLeuIleAlaTyrCys : 267 :!!||||||! !! ||||||!!.! !|||!:!|||||||||||||||||| :::||| LysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCys 32983 : AAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTaattgaattttgt : 33042 268 : GlyLysLeuGluGluValPheSerLeuIleIleLeuGluGlnValLeuMetPheSerLeu : 287 |||||||||||||||!!!:!!|||:!!|||! !||||||||||||||||||:!! GluIleLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMetPheSerIle 33043 : gaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTAATGTTTAGCATA : 33102 288 : LeuIleCysLeuAspGlyTyrGlnValLeuMet >>>> Target Intron 4 >>>> : 299 :!!||||||!!!! !||||||:!!||||||:!! 406 bp IleIleCysPheAlaGlyTyrGluValLeuLeu++ 33103 : ATAATTTGCTTCGCCGGGTATGAAGTACTCCTGgt......................... : 33140 300 : AlaAsnAlaSerThrSerIleArgValIlePheIleCysHisIleLeuAlaCysLeuC : 318 !!.. ! !! !..! |||||| !|||! ||| !:!::!!.!! !!:!! ++IleThrLeuProPheGluSerArgValAlaPheThrCysPheLeuIleThrGlyValS 33141 : agATAACGTTACCATTTGAATCGCGCGTTGCTTTCACGTGCTTCTTGATTACGGGCGTGA : 33601 319 : ysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSerAlaSerIleA : 338 !!||||||! !||||||||||||||||||:!!||||||! !! !|||||| !!:!|||| erGlnLeuTrpMetPheThrTyrSerCysAsnCysIleThrThrGluSerLeuAsnIleA 33602 : GTCAACTATGGATGTTCACGTACAGTTGCAATTGCATAACAACAGAAAGCCTGAACATCG : 33661 339 : laThrAlaAlaTyrLysGlyProTrpLeuIleLeuProMetSerThrSerGlyArgMetM : 358 || !:!!!.!||| |||||||||:!!! !|||||||||... |||::::::: laGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuL 33662 : CTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaactgC : 33721 359 : etArgLysAspLeuThrLeuIleIleLeuArgSerHisIleProCysCysLeuThrGlyL : 378 !:|||||||||||| !:!!:!!|||||||||:!!... !|||! !..!||||||!.! euArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerAlaLeuThrAlaC 33722 : TAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCT : 33781 379 : ysGlyPhePheValValSerLeuGluThrTyrThrSer >>>> Target Intron 5 : 391 ||||||||| !:!!!!!|||||||||!:!|||!.! 440 bp ysGlyPhePheSerIleThrLeuGluThrPheThrLys++ 33782 : GTGGATTCTTTTCTATAACTCTCGAAACCTTTACTAAGgt.................... : 33822 392 : >>>> ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgGln : 404 :!!:!!||||||:!! !||||||||||||||||||!:!||| ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGln 33823 : .....agATCATGAGTACATCAATGTCGTATTTCACCCTACTAAAACAA : 34301 vulgar: gi|350425964|ref|XP_003494289.1| 0 404 . KQ414828.1 31105 34301 + 958 M 66 198 S 0 1 5 0 2 I 0 662 3 0 2 S 1 2 M 1 3 F 0 4 M 81 243 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 34 102 5 0 2 I 0 303 3 0 2 M 51 153 G 3 0 M 60 180 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31106 34301 958 + . gene_id 3 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 31106 31304 . + . KQ414828.1 exonerate:protein2genome:local exon 31106 31304 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 31305 31306 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 31305 31970 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 31969 31970 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 31971 32223 . + . KQ414828.1 exonerate:protein2genome:local exon 31971 32223 . + . insertions 0 ; deletions 0 ; frameshifts 4 KQ414828.1 exonerate:protein2genome:local splice5 32224 32225 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32224 32393 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 32392 32393 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 32394 32497 . + . KQ414828.1 exonerate:protein2genome:local exon 32394 32497 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32498 32499 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32498 32804 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 32803 32804 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32805 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32805 33137 . + . insertions 0 ; deletions 3 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 5 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34301 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34301 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31106 34301 958 + . alignment_id 3 ; Query gi|350425964|ref|XP_003494289.1| ; Align 31106 1 198 ; Align 31973 68 3 ; Align 31980 69 243 ; Align 32396 151 102 ; Align 32805 185 153 ; Align 32958 239 180 ; Align 33544 299 276 ; Align 34260 391 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 533 Query range: 147 -> 391 Target range: 22307 -> 23829 148 : LeuValAlaAsnIleGlyArgAsnGluSerAspArgValLeuProPheAsnMetTrpIle : 167 ::::::||||||:!!|||!:!|||||||||||||||! !! ! !!:!:!!||||||:!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 22308 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 22365 168 : AspLeuProLeuThrValThrProTyrTyrGluIleIlePhe >>>> Target Intr : 182 ||||||||||||:!!||||||||||||||||||||| ::! 316 bp AspLeuProLeuSerValThrProTyrTyrGluIleThrTyr-+ 22366 : GATCTACCATTATCCGTAACAccatattatgaaattacttACat................ : 22412 183 : on 1 >>>> ValLeuGlnValLeuSerLeuTyrHisIleGlyIleSerTyrPheCysP : 198 !.!|||...||| |||!!.:!!.!! !!!|||.!!|||| ++AlaLeuSerVal---------TyrGlnValSerAlaCysTyrLeuCysP 22413 : .........agGCTTTATCTGTG---------TACCAAGTTAGCGCGTGTTACCTTTGCt : 22765 199 : heAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGlnPheArgValLeuGlnT : 218 ||||| ...... |||::: ||||||||||||||||||||||||:!!||||||| heAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnT 22766 : ttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAAT : 22825 219 : yrArgIleAlaAsnMetProAspLeuMetAspLysValLysGlnSerGlyAspLysIleL : 238 ||||||||||||||:!! !!! !|||! !!:! !||||||...|||! !:!! ! yrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluAsnPro---- 22826 : ACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCA---- : 22882 239 : euAsnThrGlySerSerCysLeuAlaAsnGluCysTyrSerIlePheLysLysTyrIleA : 258 !:! !..!..!! ! !:!!.!.:!!||||||! !! ||||||!!.! !|||! -----SerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleG 22883 : -----AGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTC : 22936 259 : rgGlnHisGlnAlaLeuIleAlaTyrCysGlyLysLeuGluGluValPheSerLeuIleI : 278 :!||||||||||||||||||! !!:!|||!.!! !|||||||||||||||!!!:!!|||: lnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleV 22937 : AACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCG : 22996 279 : leLeuGluGlnValLeuMetPheSerLeuLeuIleCysLeuAspGlyTyrGlnValLeuM : 298 !!|||! !||||||||||||! !|||:!!|||||||||!!! !|||||||||||||||: alLeuGlyGlnValLeuMetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeuL 22997 : TACTCGGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCC : 23056 299 : etAlaAsnAlaSerThrSer{I} >>>> Target Intron 2 >>>> {le}ArgV : 307 !!!.!!:! !..!!:!! !{!} 492 bp { }|||| euValSerIleGluSerTyr{T}-+ +-{hr}ArgV 23057 : TGGTGAGTATCGAAAGCTAT{A}at.........................at{CG}CGCG : 23575 308 : alIlePheIleCysHisIleLeuAlaCysLeuCysGlnLeuLeuMetPheThrTyrSerC : 327 || !||| ||| !:!::!! ! !!:!! !!||||||! !|||||||||||||||| alAlaPheAlaCysPheLeuMetMetGlyMetSerGlnLeuTrpMetPheThrTyrSerC 23576 : TTGCTTTCGCGTGCTTCTTGATGATGGGCATGAGTCAACTATGGATGTTCACGTATAGTT : 23635 328 : ysAspCysIleIleArgGluSerAlaSerIleAlaThrAlaAlaTyrLysGlyProTrpL : 347 |||||||||||! !! !|||||| !!:!|||||| !:!!!.!||| |||||||||: ysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpI 23636 : GCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGA : 23695 348 : euIleLeuProMetSerThrSerGlyArgMetMetArgLysAspLeuThrLeuIleIleL : 367 !!! !|||||||||..!! !! !|||!:!:!!:!:||||||!!:||| !:!!:!!|||| leAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysGluLeuGlnMetLeuIleL 23696 : TAAATTTACCAATGGACAAATTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTCATCT : 23755 368 : euArgSerHisIleProCysCysLeuThrGlyLysGlyPhePheValValSerLeuGluT : 387 |||||:!!... !|||! !..!||||||!.! ||||||||| !:!!|||||||||| euArgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleSerLeuGluT 23756 : TGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAA : 23815 388 : hrTyrThrSerVal : 391 ||!:!|||!.!||| hrPheThrLysVal 23816 : CCTTTACTAAGGTA : 23829 vulgar: gi|350425964|ref|XP_003494289.1| 147 391 . KQ414828.1 22307 23829 + 533 M 34 102 5 0 2 I 0 312 3 0 2 M 4 12 G 3 0 M 48 144 G 3 0 M 65 195 S 0 1 5 0 2 I 0 488 3 0 2 S 1 2 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22308 23829 533 + . gene_id 4 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22308 22409 . + . KQ414828.1 exonerate:protein2genome:local exon 22308 22409 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22410 22411 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 22410 22725 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 23077 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 23077 . + . insertions 0 ; deletions 6 KQ414828.1 exonerate:protein2genome:local splice5 23078 23079 . + . intron_id 2 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 23078 23569 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 23568 23569 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local cds 23570 23829 . + . KQ414828.1 exonerate:protein2genome:local exon 23570 23829 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22308 23829 533 + . alignment_id 4 ; Query gi|350425964|ref|XP_003494289.1| ; Align 22308 148 102 ; Align 22726 182 12 ; Align 22738 189 144 ; Align 22882 240 195 ; Align 23572 306 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 447 Query range: 184 -> 403 Target range: 10831 -> 13143 185 : ValLeuSerLeuTyrHisIleGlyIleSerTyrPheCysPheAspAsnPheLeuCysIle : 204 :!!! !.!!|||||| !! !||||||!!!||||||||||||||||||.!!!!!|||||| IleSerGlyLeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIle 10832 : ATTTCAGGACTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATC : 10889 205 : MetAsnLeuHisValAlaGlyGlnPheArgValLeuGlnTyrArgIleAlaAsnMetPro : 224 |||!:!:!!|||:!!::!||||||||||||:!!||||||||||||:!:.!!!!.:!! !! MetSerValHisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSer 10890 : ATGAGCGTGCATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCC : 10949 225 : AspLeuMetAspLysValLysGlnSerGlyAspLysIleLeuAsnThrGlySerSerCys : 244 |||:!!... ! |||! !...:::||| :::...::!! !! !..! ! AspValGln---------TyrGlnIleSerGluLysAsnMetGluSerValLeuGluAsp 10950 : GACGTACAA---------TATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGAC : 11000 245 : LeuAlaAsnGluCysTyrSerIlePheLysLysTyrIleArgGlnHisGlnAlaLeuIle : 264 ! !.!!..!..!! !|||..!! !||||||!..|||:!!||||||||||||.!!|||||| CysThrArgArgSerTyrGluLysPheLysSerTyrValArgGlnHisGlnThrLeuIle 11001 : TGTACACGTAGATCTTACGAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATC : 11060 265 : AlaTyrCysGlyLysLeuGluGluValPheSerLeuIleIleLeuGluGlnValLeuMet : 284 ! !|||! !! !|||||||||.!.|||!:!!!! !|||||||||! !|||||||||:!! AspTyrTyrGluLysLeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeu 11061 : GATTATTACGAGAAGCTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTG : 11120 285 : PheSerLeuLeuIleCysLeuAspGlyTyrGlnValLeuMetAlaAsn >>>> Targe : 301 ||||||:!!|||||||||||| !|||||||||:!!|||:!!!.!!:! 1 PheSerValLeuIleCysLeuPheGlyTyrGlnIleLeuLeuValSer-+ 11121 : TTCAGTGTGTTAATTTGCCTCTTTGGTTATCAGATATTATTGGTTAGTat.......... : 11173 302 : t Intron 1 >>>> AlaSerThrSerIle<-><->ArgValIlePheIleCysHisI : 313 299 bp |||!:!||||||:!! ||| !||||||!!:! !! !| ++AlaAsnThrSerLeuAlaArgArgSerIlePheMetPheLeuI 11174 : ...............agGCTAATACTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCA : 12512 314 : leLeuAlaCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgG : 333 ||! !!.!..!:!! ! !|||!!!||||||||||||||||||:!! :!:|||..!: leCysGlyAlaMetValLeuLeuPheMetPheThrTyrSerCysAsnMetValIleGluG 12513 : TATGTGGCGCCATGGTTTTATTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAAC : 12572 334 : luSerAlaSerIleAlaThrAlaAlaTyrLysGlyProTrpLeuIleLeuProMetSerT : 353 !!|||! !!:!|||||| !|||||||||..!!.!! !||| ! !:!!||||||!:!! lnSerAspAsnIleAlaPheAlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnL 12573 : AAAGCGATAATATTGCTTTTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACA : 12632 354 : hrSerGlyArgMetMetArgLysAspLeuThrLeuIleIleLeuArgSerHisIleProC : 373 !!!!|||!:!! !:!:||| ! ||||||! !:!!:!!||| !||||||... ! !| ysThrGlyLysLysLeuArgHisAspLeuIleMetValIleGlyArgSerArgArgValC 12633 : AAACTGGCAAAAAGCTACGGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTT : 12692 374 : ysCysLeuThrGlyLysGlyPhePheValValSerLeuGluThrTyrThr--{S} >>> : 390 |||||||||||!.!!!.||||||||| !|||||||||||||||||||||##{.} ysCysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThr##{G}++ 12693 : GTTGTCTGACTGCGAATGGATTTTTCCCTGTGTCCTTAGAAACTTATACTAC{G}gt... : 12748 391 : > Target Intron 2 >>>> {er}ValLeuSerThrAlaAlaSerTyrPheThrLe : 401 357 bp {.!}:::||||||||||||||||||||||||||||| +-{lu}IleLeuSerThrAlaAlaSerTyrPheThrLe 12749 : ......................ac{ag}attttgAGTACCGCGGCGTCGTACTTCACATT : 13135 402 : uLeuArg : 403 ||||||| uLeuArg 13136 : ATTGAGA : 13143 vulgar: gi|350425964|ref|XP_003494289.1| 184 403 . KQ414828.1 10831 13143 + 447 M 43 129 G 3 0 M 70 210 5 0 2 I 0 1295 3 0 2 M 5 15 G 0 6 M 84 252 F 0 2 S 0 1 5 0 2 I 0 353 3 0 2 S 1 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10832 13143 447 + . gene_id 5 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 10832 11170 . + . KQ414828.1 exonerate:protein2genome:local exon 10832 11170 . + . insertions 0 ; deletions 3 KQ414828.1 exonerate:protein2genome:local splice5 11171 11172 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 11171 12469 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12468 12469 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 12470 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12745 . + . insertions 6 ; deletions 0 ; frameshifts 2 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13102 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13101 13102 . + . intron_id 1 ; splice_site "ac" KQ414828.1 exonerate:protein2genome:local cds 13103 13143 . + . KQ414828.1 exonerate:protein2genome:local exon 13103 13143 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10832 13143 447 + . alignment_id 5 ; Query gi|350425964|ref|XP_003494289.1| ; Align 10832 185 129 ; Align 10961 231 210 ; Align 12470 301 15 ; Align 12491 306 252 ; Align 13105 391 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 274 Query range: 291 -> 404 Target range: 28484 -> 29233 292 : AspGlyTyrGlnValLeuMetAlaAsnAlaSerThrSerIleArgValIlePheIleCys : 311 ||| !|||.!.! ! !..! !!!. !||| !..! |||||| !!!. ||| AspMetTyrAsnGlyThrGlnAsnLysLeuSerPheGluTrpArgValAlaLeuAlaCys 28485 : GATATGTATAATGGCACACAGAATAAGTTATCATTTGAATGGCGCGTTGCTTTGGCGTGC : 28542 312 : HisIleLeuAlaCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIle : 331 ! :!!.!! !!:!! !!||||||! !|||||||||||||||||||||||||||! ! PheSerMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThr 28543 : TTCTCGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACA : 28602 332 : ArgGluSerAlaSerIleAlaThrAlaAlaTyrLysGlyProTrpLeuIleLeuProMet : 351 ! !|||||| !!:!|||||| !:!!!.!||| |||||||||:!!! !||||||||| ThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMet 28603 : ACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATg : 28662 352 : SerThrSerGlyArgMetMetArgLysAspLeuThrLeuIleIleLeuArgSerHisIle : 371 ... |||:::::::!:|||||||||||| !:!!:!!|||||||||:!!... ! AspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArg 28663 : gataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGA : 28722 372 : ProCysCysLeuThrGlyLysGlyPhePheValValSerLeuGluThrTyrThrSer > : 391 |||! !! !||||||!.! ||||||||| !:!!||||||||||||!:!|||!.! ProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 28723 : CCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt. : 28784 392 : >>> Target Intron 1 >>>> ValLeuSerThrAlaAlaSerTyrPheThrLeuL : 402 410 bp :!!:!!||||||:!! !|||||||||||||||| ++IleMetSerThrSerMetSerTyrPheThrLeuL 28785 : ........................agATCATGAGTACATCAATGTCGTATTTCACATTAT : 29225 403 : euArgGln : 404 ||!:!||| euLysGln 29226 : TAAAACAA : 29233 vulgar: gi|350425964|ref|XP_003494289.1| 291 404 . KQ414828.1 28484 29233 + 274 M 99 297 5 0 2 I 0 406 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28485 29233 274 + . gene_id 6 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 28485 28781 . + . KQ414828.1 exonerate:protein2genome:local exon 28485 28781 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 28782 28783 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 28782 29191 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 29190 29191 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 29192 29233 . + . KQ414828.1 exonerate:protein2genome:local exon 29192 29233 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28485 29233 274 + . alignment_id 6 ; Query gi|350425964|ref|XP_003494289.1| ; Align 28485 292 297 ; Align 29192 391 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 263 Query range: 172 -> 300 Target range: 37832 -> 38207 173 : ValThrProTyrTyrGluIleIlePheValLeuGlnValLeuSerLeuTyrHisIleGly : 192 :!!! !||| ::: ||| ::! !|||!.!||||||:!!|||!!.:!!.!! MetIleProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValSer 37833 : ATGATTCCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTAGC : 37890 193 : IleSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGln : 212 !!!|||.!!||||||||| ...... |||::: |||||||||||||||||| AlaCysTyrLeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGln 37891 : GCGTGTTACCTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAG : 37950 213 : PheArgValLeuGlnTyrArgIleAlaAsnMetProAspLeuMetAspLysValLysGln : 232 ||||||:!!|||||||||||||||||||||:!! !!! !|||! !!:! !||||||... PheArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSer 37951 : TTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGC : 38010 233 : SerGlyAspLysIleLeuAsnThrGlySerSerCysLeuAlaAsnGluCysTyrSerIle : 252 |||! !:!! ! !:! !..!..!! ! !:!!.!.:!!||||||! !! SerGluAsnPro---------SerThrAspGluLeuTyrSerGluLysCysTyrIleLys 38011 : AGTGAAAATCCA---------AGCACAGATGAATTATACTCAGAGAAATGTTACATCAAG : 38061 253 : PheLysLysTyrIleArgGlnHisGlnAlaLeuIleAlaTyrCysGlyLysLeuGluGlu : 272 ||||||!!.! !|||!:!||||||||||||||||||! !!:!|||!.!! !||||||||| PheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGlu 38062 : TTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAG : 38121 273 : ValPheSerLeuIleIleLeuGluGlnValLeuMetPheSerLeuLeuIleCysLeuAsp : 292 ||||||!!!:!!||| !|||! !||||||||||||||||||:!!|||||||||!!!! ! ValPheThrValIleAlaLeuGlyGlnValLeuMetPheSerIleLeuIleCysPheVal 38122 : GTATTCACGGTAATTGCACTCGGACAAGTCCTAATGTTTAGCATACTAATTTGCTTCGTC : 38181 293 : GlyTyrGlnValLeuMetAlaAsn : 300 ! !||||||!.!|||:!!!.!!:! ValTyrGlnAlaLeuLeuValSer 38182 : GTGTATCAAGCACTCCTGGTGAGT : 38207 vulgar: gi|350425964|ref|XP_003494289.1| 172 300 . KQ414828.1 37832 38207 + 263 M 64 192 G 3 0 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37833 38207 263 + . gene_id 7 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37833 38207 . + . KQ414828.1 exonerate:protein2genome:local exon 37833 38207 . + . insertions 0 ; deletions 3 KQ414828.1 exonerate:protein2genome:local similarity 37833 38207 263 + . alignment_id 7 ; Query gi|350425964|ref|XP_003494289.1| ; Align 37833 173 192 ; Align 38025 240 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 224 Query range: 316 -> 391 Target range: 38535 -> 38760 317 : LeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSerAlaSer : 336 :!! !!||||||! !|||||||||||||||||||||||||||! !! !|||||| !!:! ValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsn 38536 : GTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAAC : 38593 337 : IleAlaThrAlaAlaTyrLysGlyProTrpLeuIleLeuProMetSerThrSerGlyArg : 356 |||||| !:!!!.!||| |||||||||:!!! !|||||||||... |||::: IleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLys 38594 : ATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaa : 38653 357 : MetMetArgLysAspLeuThrLeuIleIleLeuArgSerHisIleProCysCysLeuThr : 376 ::::!:|||||||||||| !:!!:!!|||||||||:!!... !|||! !! !|||||| LeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThr 38654 : ctgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACT : 38713 377 : GlyLysGlyPhePheValValSerLeuGluThrTyrThrSerVal : 391 !.! ||||||||| !:!!||||||||||||!:!|||!.!||| AlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 38714 : GCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 38760 vulgar: gi|350425964|ref|XP_003494289.1| 316 391 . KQ414828.1 38535 38760 + 224 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38536 38760 224 + . gene_id 8 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38536 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38536 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38536 38760 224 + . alignment_id 8 ; Query gi|350425964|ref|XP_003494289.1| ; Align 38536 317 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 207 Query range: 63 -> 149 Target range: 21885 -> 22143 64 : PheSerAlaCysLeuPheAspAlaCysAsnIleLeuSerLeuThrMetProPheIleLys : 83 |||.....!|||:!!!:! |||||||||! !|||:!!|||..!:!! !.!.|||||| PheGlnValCysMetTyrMetAlaCysAsnSerLeuAlaLeuValLeuAspIleIleLys 21886 : tttcaggTTTGCATGTACATGGCATGCAACAGTTTAGCCCTGGTTTTGGATATAATCAAG : 21943 84 : IleLeuValLeuLeuAlaHisLysGluAspPhePheArgLeuIlePheTyrLeuGlnArg : 103 |||!!!|||||||||!.!!..|||:!! ! |||.!! !!|||||| |||:!!|||!:! IlePheValLeuLeuValArgLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLys 21944 : ATTTTCGTCCTACTCGTACGGAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAG : 22003 104 : LysPheLeuHisGlyAsnTyrAsnAspTyrGluArgLysIleValIleSerCysLysArg : 123 !!.|||! !||| !||||||:!!.!. !!|||!.!...|||:!! ! !...|||||| AsnPheTrpHisLeuAsnTyrAspGlnAspGluAsnSerIleIleAlaHisAlaLysArg 22004 : AATTTTTGGCATTTGAACTACGACCAGGACGAGAATTCTATTATCGCACACGCGAAACGA : 22063 124 : LysCysThrPhePheIleCysPhePheThrLeuPheThrLeuAlaThrValAlaSerTyr : 143 ! !|||! !!:!|||:!!||| !!|||:!!!!!! !:!!! !:!!|||||| !|||||| ThrCysIleTyrPheValCysValPheSerPheCysSerGlnSerThrValPheSerTyr 22064 : ACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTAT : 22123 144 : IleIleAsnProLeuVal : 149 ||||||!..|||!!!||| IleIleArgProPheVal 22124 : ATAATAAGGCCATTTGTA : 22143 vulgar: gi|350425964|ref|XP_003494289.1| 63 149 . KQ414828.1 21885 22143 + 207 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21886 22143 207 + . gene_id 9 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 21886 22143 . + . KQ414828.1 exonerate:protein2genome:local exon 21886 22143 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21886 22143 207 + . alignment_id 9 ; Query gi|350425964|ref|XP_003494289.1| ; Align 21886 64 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 0 -> 64 Target range: 26060 -> 26252 1 : MetSerPheIleLysThrAspAspIleSerValArgLeuThrSerValPheMetLysLeu : 20 ||||||!!.! ! ! !.!.|||:!!||||||||||||.!!!:! !!|||:!! ! :!! MetSerLeuLysTyrArgGlnAspValSerValArgLeuAlaAsnPhePheLeuTyrVal 26061 : ATGAGCTTGAAATATCGTCAAGACGTTTCCGTTAGATTAGCCAACTTTTTTCTGTATGTC : 26118 21 : ValGlyLeuTrpMetAlaThrGluArgSerGluGlnArgIleArgAsnIleThrValGly : 40 ||||||!!!|||.!.|||.!!.!.|||! !|||:!! !!.!!|||||| .!!:!! ! ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeu 26119 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCGGCGATTCTG : 26178 41 : TyrThrLeuValAlaIleMetPheAlaMetTrpLeuGlnThrThrAspMetTyrTyrSer : 60 ||||||:!!|||.!!:!!.!.|||!.!|||||||||||| ! !! :!:|||!:!:!! TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuGlyGlyLeuTyrPheAla 26179 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGGGAGGGCTTTATTTCGCC : 26238 61 : TrpGlyAspPhe : 64 ||||||:!!||| TrpGlyAsnPhe 26239 : TGGGGAAACTTT : 26252 vulgar: gi|350425964|ref|XP_003494289.1| 0 64 . KQ414828.1 26060 26252 + 162 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26061 26252 162 + . gene_id 10 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 26061 26252 . + . KQ414828.1 exonerate:protein2genome:local exon 26061 26252 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 26061 26252 162 + . alignment_id 10 ; Query gi|350425964|ref|XP_003494289.1| ; Align 26061 1 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 0 -> 63 Target range: 36171 -> 36360 1 : MetSerPheIleLysThrAspAspIleSerValArgLeuThrSerValPheMetLysLeu : 20 ||||||!!.! ! ! !.!.|||:!!|||:!!!:!|||.!!!:! !!|||:!! ! :!! MetSerLeuLysTyrArgGlnAspValSerIleLysLeuAlaAsnPhePheLeuTyrVal 36172 : ATGAGCTTGAAATATCGTCAAGACGTTTCCATTAAATTAGCCAACTTTTTTCTGTATGTC : 36229 21 : ValGlyLeuTrpMetAlaThrGluArgSerGluGlnArgIleArgAsnIleThrValGly : 40 ||||||!!!|||.!.|||.!!.!.|||! !|||:!! !!.!!|||||| .!!:!! ! ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeu 36230 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCGGCGATTCTG : 36289 41 : TyrThrLeuValAlaIleMetPheAlaMetTrpLeuGlnThrThrAspMetTyrTyrSer : 60 ||||||:!!|||.!!:!!.!.|||!.!|||||||||||| !! !! :!:||||||:!! TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrTyrAla 36290 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGGCTTTATTACGCC : 36349 61 : TrpGlyAsp : 63 ||||||:!! TrpGlyAsn 36350 : TGGGGAAAC : 36360 vulgar: gi|350425964|ref|XP_003494289.1| 0 63 . KQ414828.1 36171 36360 + 157 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 36172 36360 157 + . gene_id 11 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 36172 36360 . + . KQ414828.1 exonerate:protein2genome:local exon 36172 36360 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 36172 36360 157 + . alignment_id 11 ; Query gi|350425964|ref|XP_003494289.1| ; Align 36172 1 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 0 -> 64 Target range: 21030 -> 21222 1 : MetSerPheIleLysThrAspAspIleSerValArgLeuThrSerValPheMetLysLeu : 20 ||||||!!.! ! ! !.!.|||:!!||||||||||||.!!!:! !!!:!:!! ! :!! MetSerLeuLysTyrArgGlnAspValSerValArgLeuAlaAsnPheTyrLeuTyrVal 21031 : ATGAGCTTGAAATATCGCCAAGACGTTTCCGTTAGATTAGCCAATTTTTATCTGTATGTC : 21088 21 : ValGlyLeuTrpMetAlaThrGluArgSerGluGlnArgIleArgAsnIleThrValGly : 40 ||||||!!!|||.!.|||.!!.!.|||! !|||:!! !!.!! !!||| .!!:!! ! ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheGlyAsnAlaAlaIleLeu 21089 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCGGAAACGCGGCGATTCTG : 21148 41 : TyrThrLeuValAlaIleMetPheAlaMetTrpLeuGlnThrThrAspMetTyrTyrSer : 60 ||||||:!!|||.!!:!!.!.|||!.!|||||||||||| !! !! :!:|||!:!||| TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSer 21149 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGACTTTATTTCTCC : 21208 61 : TrpGlyAspPhe : 64 ||||||:!!||| TrpGlyAsnPhe 21209 : TGGGGAAACTTT : 21222 vulgar: gi|350425964|ref|XP_003494289.1| 0 64 . KQ414828.1 21030 21222 + 156 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21031 21222 156 + . gene_id 12 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 21031 21222 . + . KQ414828.1 exonerate:protein2genome:local exon 21031 21222 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21031 21222 156 + . alignment_id 12 ; Query gi|350425964|ref|XP_003494289.1| ; Align 21031 1 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 145 -> 189 Target range: 27333 -> 27465 146 : AsnProLeuValAlaAsnIleGlyArgAsnGluSerAspArgValLeuProPheAsnMet : 165 ||| ::::::||||||:!!|||!:!|||||||||||||||! !! ! !|||:!!||| AsnPheIleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMet 27334 : aattttattttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATG : 27391 166 : TrpIleAspLeuProLeuThrValThrProTyrTyrGluIleIlePheValLeuGlnVal : 185 |||.!!||||||||||||:!!||||||||||||||||||||| ::!:!!:!!|||||| TrpPheAspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnVal 27392 : TGGTTCGATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTA : 27451 186 : LeuSerLeuTyr : 189 ||| !!:!!!:! LeuProIlePhe 27452 : TTACCAATTTTC : 27465 vulgar: gi|350425964|ref|XP_003494289.1| 145 189 . KQ414828.1 27333 27465 + 151 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27334 27465 151 + . gene_id 13 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27334 27465 . + . KQ414828.1 exonerate:protein2genome:local exon 27334 27465 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27334 27465 151 + . alignment_id 13 ; Query gi|350425964|ref|XP_003494289.1| ; Align 27334 146 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 145 -> 189 Target range: 37444 -> 37576 146 : AsnProLeuValAlaAsnIleGlyArgAsnGluSerAspArgValLeuProPheAsnMet : 165 ||| ::: ||||||:!!|||!:!|||||||||||||||! !! ! !!:!:!!||| AsnPheIleSerAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMet 37445 : aattttatttcagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATG : 37502 166 : TrpIleAspLeuProLeuThrValThrProTyrTyrGluIleIlePheValLeuGlnVal : 185 |||:!!||||||||||||:!!:!!|||||||||||||||||| ::!:!!:!!|||||| TrpLeuAspLeuProLeuSerIleThrProTyrTyrGluIleThrTyrIleIleGlnVal 37503 : TGGCTCGATCTACCATTATCCATAACAccatattatgaaattacttACATAATACAGGTA : 37562 186 : LeuSerLeuTyr : 189 ||| !!:!!!:! LeuProIlePhe 37563 : TTACCAATTTTC : 37576 vulgar: gi|350425964|ref|XP_003494289.1| 145 189 . KQ414828.1 37444 37576 + 146 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37445 37576 146 + . gene_id 14 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37445 37576 . + . KQ414828.1 exonerate:protein2genome:local exon 37445 37576 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37445 37576 146 + . alignment_id 14 ; Query gi|350425964|ref|XP_003494289.1| ; Align 37445 146 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 154 -> 191 Target range: 9340 -> 9451 155 : AsnGluSerAspArgValLeuProPheAsnMetTrpIleAspLeuProLeuThrValThrPr : 175 |||:!!|||!!:|||!.!!!!! !|||:!!||||||:!!:!!|||||||||||||||:!!|| AsnLysSerGluArgAlaPheLeuPheAspMetTrpLeuAsnLeuProLeuThrValSerPr 9341 : AACAAATCTGAAAGAGCGTTTCTGTTCGACATGTGGCTCAATTTACCTCTGACTGTTTCGCC : 9401 176 : oTyrTyrGluIleIlePheValLeuGlnValLeuSerLeuTyrHisIle : 191 |||||||||| !!!:!!.!.!:!!||||||!!! :::::: ||| oTyrTyrGluGlyMetLeuAlaValGlnValPheProValPheThrIle 9402 : TTACTACGAAGGAATGTTGGCTGTACAGGTATTTCcagttttcacaatt : 9451 vulgar: gi|350425964|ref|XP_003494289.1| 154 191 . KQ414828.1 9340 9451 + 104 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 9341 9451 104 + . gene_id 15 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 9341 9451 . + . KQ414828.1 exonerate:protein2genome:local exon 9341 9451 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 9341 9451 104 + . alignment_id 15 ; Query gi|350425964|ref|XP_003494289.1| ; Align 9341 155 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425429|ref|XP_003494119.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1262 Query range: 0 -> 405 Target range: 7890 -> 13158 1 : MetGlnThrGluGlnAspLeuAspIleSerValIlePheSerMetPhePheLeuArgAsn : 20 ||||||||||||:!!|||! !|||||||||:!!! !!!.|||! ||||||||||||||| MetGlnThrGluLysAspSerAspIleSerIleAsnLeuSerLysPhePheLeuArgAsn 7891 : ATGCAAACGGAGAAGGATTCGGACATATCGATCAACTTGTCGAAATTCTTCTTGCGCAAT : 7948 21 : IleGlyLeuTrpIleSerAspAsnArgAlaGluAsnArgArgMetLysIleLysLeuMet : 40 :!!|||||||||! :!!!!:|||!.!||||||||||||!:!! !||| !:!! ValGlyLeuTrpArgAlaGluAsnHisAlaGluAsnArgLysArgLysAlaLeuValAla 7949 : GTCGGCCTGTGGAGGGCTGAGAATCACGCGGAGAATCGTAAAAGGAAAGCGTTGGTCGCC : 8008 41 : CysThrLeuPheAsnSerIleAspAlaSerIleValIleMetArgAspPheTyrPheThr : 60 ! !|||:!!!::|||! !.!! |||! !:!:||| !! !||||||.!.||||||||| TyrThrIleTrpAsnMetPheLeuAlaIleValValGluThrArgAspMetTyrPheThr 8009 : TACACGATTTGGAACATGTTTTTGGCCATAGTGGTTGAAACGAGAGATATGTATTTCACC : 8068 61 : TrpLeuTyrLysGly >>>> Target Intron 1 >>>> AspIleLeuTyrValT : 71 |||!!!||||||||| 796 bp |||||||||||||||! TrpPheTyrLysGly++ ++AspIleLeuTyrValS 8069 : TGGTTCTATAAAGGCgt.........................agGATATTCTTTACGTTA : 8897 72 : hrThrAsnIleLeuThrValIleMetGlyLeuIleLysIleCysIleIleLeuMetHisL : 91 :!||||||:!!|||!:!||||||:!: ! !||||||:!! !:!!:!!|||!!:|||| erThrAsnLeuLeuSerValIleLeuThrThrIleLysLeuThrValValLeuIleHisL 8898 : GTACCAACTTACTGAGCGTGATCTTAACTACGATCAAGCTAACTGTCGTACTAATACACA : 8957 92 : ysArgGluPheIleSerLeuIleThrTyrThrGlnArgAsnPheTrpAsnValAsnTyrA : 111 || !||||||!!:||||||||| !|||! ! ! ..!:!!||||||||||||:!!|||| ysValGluPheMetSerLeuIleAspTyrMetTyrGluHisPheTrpAsnValAspTyrA 8958 : AAGTGGAATTCATGAGTCTGATTGATTACATGTACGAACATTTCTGGAACGTGGATTACG : 9017 112 : spThrArgGluLysGluIleLeuLysAsnCysArgLysThrCysThrPhePheValCysS : 131 || !!.!||||||..!|||:!: ||||||:::|||||||||! !.!!|||..!! | spLeuHisGluLysArgIleMetAspAsnCysLysLysThrCysIleIlePheThrSerS 9018 : ATCTTCACGAGAAAAGAATTATggataattgtaaaaaaactTGCATCATCTTCACTTCAA : 9077 132 : erValSerAlaIleGlyIleCysAlaMetLeuAlaTyrLeuSerThrProLeuIle{T} : 150 |||||!!!.!!|||||||||||||||!!::!!:!!|||:!!:!!||||||!!!|||{!} erValThrThrIleGlyIleCysAlaIleIleSerTyrIleAlaThrProPheIle{M}+ 9078 : GCGTCACTACCATTGGCATATGCGCTATAATATCTTACATAGCGACACCGTTTATC{A}g : 9135 151 : >>>> Target Intron 2 >>>> {hr}AsnAlaGlyLysAsnLysSerGluArgI : 160 192 bp { !}:!!::! !!..||||||||||||||| + ++{et}HisSerGlnSerAsnLysSerGluArgA 9136 : t.........................ag{TG}CACAGTCAAAGCAACAAATCTGAAAGAG : 9356 161 : leLeuProPheAsnValTrpLeuAsnLeuProValSerIleSerProTyrTyrGluIleG : 180 !!!! !|||:!!:!!|||||||||||||||:!!!!!:!!||||||||||||||| ! laPheLeuPheAspMetTrpLeuAsnLeuProLeuThrValSerProTyrTyrGluGlyM 9357 : CGTTTCTGTTCGACATGTGGCTCAATTTACCTCTGACTGTTTCGCCTTACTACGAAGGAA : 9416 181 : lyPheLeuIleGln >>>> Target Intron 3 >>>> ThrIleSerLeuTyrTy : 190 !!!. !:!!||| 1401 bp ! ! !.!!||||||!: etLeuAlaValGln++ ++IleSerGlyLeuTyrPh 9417 : TGTTGGCTGTACAGgt.........................agATTTCAGGACTGTATTT : 10847 191 : rIleAlaValSerTyrPheCysPheAspAsnValPheCysIleLeuAlaValHisLeuTh : 210 !! !!.!:!!!!!||||||||||||||||||:!!|||||||||:!!::!|||||||||!: eThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerValHisLeuSe 10848 : CACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTGCATTTGAG : 10907 211 : rGlyGlnPheArgIleLeuArgTyrArgPheAlaLysLeuCysAspMetGluHisGlnIl : 230 !||||||||||||||||||!:!||||||!!..!!||||||! !|||:!::!!:!!||||| rGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGlnTyrGlnIl 10908 : TGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAATATCAGAT : 10967 231 : eThrGluGluAspThrGlyLeuMetIleThrLysHisValHisThrPheTyrGluGlnLe : 250 |!::|||:::::: !:!::!: ! ! !..!!.!! !! !||||||:!!!! eSerGluLysAsnMetGluSerValLeuGluAspCysThrArgArgSerTyrGluLysPh 10968 : AAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGTAGATCTTACGAGAAATT : 11027 251 : uLysLeuTyrIleArgGlnHisGlnThrLeuIleAspPheCysAsnArgLeuGluAspVa : 270 !||| !|||:!!||||||||||||||||||||||||!:!! !.!.!:!|||||| !!|| eLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLysLeuGluHisVa 11028 : TAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAGCTTGAACACGT : 11087 271 : lTyrThrMetLeuIlePheGlyGlnValLeuValPheSerValLeuIleCysLeuPheAl : 290 |||||||! :!!|||.!!||||||||||||:!!||||||||||||||||||||||||!. lTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIleCysLeuPheGl 11088 : TTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATTTGCCTCTTTGG : 11147 291 : aTyrGlnGlyLeuVal >>>> Target Intron 4 >>>> ValAlaAlaProPhe : 300 !|||||| !|||:!! 1305 bp !.! !.!! !!.!! yTyrGlnIleLeuLeu++ ++AlaAsnThrSerLeu 11148 : TTATCAGATATTATTGgt.........................agGCTAATACTTCTCTT : 12482 301 : AlaArgArgSerIlePheValPheLeuLeuValGlySerMetAlaLeuLeuPheMetPhe : 320 ||||||||||||||||||:!!||||||:!! !|||:!!|||!.!||||||||||||||| AlaArgArgSerIlePheMetPheLeuIleCysGlyAlaMetValLeuLeuPheMetPhe 12483 : GCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTTTTATTGTTTATGTTC : 12542 321 : ThrTyrSerCysAspGlyValIleGluHisSerGluLysValAlaIleGlyAlaTyrSer : 340 ||||||||||||:!! !|||||||||!!.|||!!:!!.:!!|||.!!!.!||||||||| ThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAlaPheAlaAlaTyrSer 12543 : ACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCTTTTGCGGCGTATTCG : 12602 341 : AlaLeuTrpThrIleMetProMetAsnLysProGlyArgMetLeuArgAsnAspLeuIle : 360 |||||||||||| !||||||||||||||| !!|||!:!! !||||||:!!||||||||| AlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeuArgHisAspLeuIle 12603 : GCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTACGGCATGATTTGATA : 12662 361 : MetValIleGluArgSerArgArgValCysCysLeuThrAlaAsnAsnPhePheProVal : 380 |||||||||! !|||||||||||||||||||||||||||||||||...|||||||||||| MetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePheProVal 12663 : ATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATGGATTTTTCCCTGTG : 12722 381 : SerLeuGluThrTyrThrThr >>>> Target Intron 5 >>>> IleLeuSerT : 391 ||||||||||||||||||||| 359 bp |||||||||| SerLeuGluThrTyrThrThr++ ++IleLeuSerT 12723 : TCCTTAGAAACTTATACTACGgt.........................agattttgAGTA : 13114 392 : hrAlaValSerTyrPheThrLeuLeuArgAsnAsnValGluAsp : 405 |||||!.!|||||||||||||||||||||||||||||||||||| hrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnValGluAsp 13115 : CCGCGGCGTCGTACTTCACATTATTGAGAAATAACGTAGAAGAT : 13158 vulgar: gi|350425429|ref|XP_003494119.1| 0 405 . KQ414828.1 7890 13158 + 1262 M 65 195 5 0 2 I 0 792 3 0 2 M 84 252 S 0 1 5 0 2 I 0 188 3 0 2 S 1 2 M 34 102 5 0 2 I 0 1397 3 0 2 M 111 333 5 0 2 I 0 1301 3 0 2 M 92 276 5 0 2 I 0 355 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 7891 13158 1262 + . gene_id 1 ; sequence gi|350425429|ref|XP_003494119.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 7891 8085 . + . KQ414828.1 exonerate:protein2genome:local exon 7891 8085 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 8086 8087 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 8086 8881 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 8880 8881 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 8882 9134 . + . KQ414828.1 exonerate:protein2genome:local exon 8882 9134 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 9135 9136 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 9135 9326 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 9325 9326 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 9327 9430 . + . KQ414828.1 exonerate:protein2genome:local exon 9327 9430 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 9431 9432 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 9431 10831 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 10830 10831 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 10832 11164 . + . KQ414828.1 exonerate:protein2genome:local exon 10832 11164 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 11165 11166 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 11165 12469 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 12468 12469 . + . intron_id 3 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 12470 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12745 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13104 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 13103 13104 . + . intron_id 4 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 13105 13158 . + . KQ414828.1 exonerate:protein2genome:local exon 13105 13158 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 7891 13158 1262 + . alignment_id 1 ; Query gi|350425429|ref|XP_003494119.1| ; Align 7891 1 195 ; Align 8882 66 252 ; Align 9329 151 102 ; Align 10832 185 333 ; Align 12470 296 276 ; Align 13105 388 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425429|ref|XP_003494119.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 571 Query range: 149 -> 407 Target range: 2879 -> 6477 150 : ThrAsnAlaGlyLysAsnLysSerGluArgIleLeuProPheAsnValTrpLeuAsnLeuPr : 170 .!!!:: |||||||||:::|||!!:|||:!!||| ! !!||| !!|||:!!:!!||||| AlaSerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuPr 2880 : GCAAgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCC : 2940 171 : oValSerIleSerProTyrTyrGluIleGlyPheLeuIleGln >>>> Target Intro : 185 |:!!!!!|||!!!||||||||||||||| ||| |||||| 406 bp oIleThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2941 : GATAACCATCACACCATactatgaaatattatttacgaTACAGgt................. : 2987 186 : n 1 >>>> ThrIleSerLeuTyrTyrIleAlaValSerTyrPheCysPheAspAsnValP : 202 ! !.!!! !:!! |||:!!..!:!!||||||.!!|||.!!|||||| !!. ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheL 2988 : ........agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTC : 3442 203 : heCysIleLeuAlaValHisLeuThrGlyGlnPheArgIleLeuArgTyrArgPheAlaLys : 222 !.|||!!::!! !:!!||| !.!! !|||||||||||||||!:!||||||.!.:!!!!. euCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsn 3443 : TGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAAT : 3502 223 : LeuCysAspMetGluHisGlnIleThrGluGluAspThrGlyLeuMetIleThrLysHisVa : 243 :!!|||! ! .!..!.!:: ...::: ... !!...:!! ValCysGlyAlaAsnGluArg------SerAspLysIleSerLysLysThrProSerAsnSe 3503 : GTGTGCGGTGCAAACGAACGT------AgcgataaaatttcgaaaaaaacaCCGTCCAATTC : 3559 244 : lHisThrPheTyrGluGlnLeuLysLeuTyrIleArgGlnHisGlnThrLeuIleAspPheC : 264 ! !! !! !|||! :!!!!!||| !! !|||!:!|||||||||.!!||||||!!:!:!| rAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrC 3560 : GGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACT : 3622 265 : ysAsnArgLeuGluAspValTyrThrMetLeuIlePheGlyGlnValLeuValPheSerVal : 284 |||||!:!|||:!!!!:|||!:! !!!:!!!:!:.!!!.!|||||||||:!!||||||:!! ysAsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeu 3623 : GTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTG : 3682 285 : LeuIleCysLeuPheAlaTyrGlnGlyLeuVal >>>> Target Intron 2 >>>> : 296 |||!!:|||||| !!.!||| ! :!!:!! 457 bp LeuMetCysLeuAspGlyTyrLeu---ValMet++ ++ 3683 : TTAATGTGCCTCGATGGATATTTG---GTGATGgt.........................ag : 4170 297 : ValAlaAlaProPheAlaArgArgSerIlePheValPheLeuLeuValGlySerMetAlaLe : 316 ! !! !.!!|||.!! !!:!||| !! !|||:!!|||! !|||..!|||!!!:!!..!! GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGl 4171 : GAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCA : 4232 317 : uLeuPheMetPheThrTyrSerCysAspGlyValIleGluHisSerGluLysValAlaIleG : 337 !|||!!.||||||||||||||||||||| !!:!!|||..!.!.||| !!!.||||||! !! nLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnA 4233 : ACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATG : 4295 338 : lyAlaTyrSerAlaLeuTrpThrIleMetProMetAsnLysProGlyArgMetLeuArgAsn : 357 .! !|||..!..!! !|||! ! !:!!||||||:!!!:! !!|||||||||||||||!!. laIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLys 4296 : CTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAA : 4355 358 : AspLeuIleMetValIleGluArgSerArgArgValCysCysLeuThrAlaAsnAsnPhePh : 378 ||||||! !.!.||||||! !||||||||| ! !||||||||||||||| !...||||| AspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePh 4356 : GATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTT : 4418 379 : eProValSerLeuGluThrTyrThrThr >>>> Target Intron 3 >>>> IleLe : 389 |||||||||||||||||||||||||:!! 1970 bp :!!:! eProValSerLeuGluThrTyrThrSer++ ++ValIl 4419 : CCCTGTGTCACTGGAAACGTACACTTCGgt.........................agGTTAT : 6421 390 : uSerThrAlaValSerTyrPheThrLeuLeuArgAsnAsnValGluAspLysAsn : 407 !|||||||||||||||||||||||||||||||||.!...!:!!||||||!..||| eSerThrAlaValSerTyrPheThrLeuLeuArgGlnArgIleGluAspSerAsn 6422 : AAGTACAGCAGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAGGACAGCAAT : 6477 vulgar: gi|350425429|ref|XP_003494119.1| 149 407 . KQ414828.1 2879 6477 + 571 M 35 105 5 0 2 I 0 402 3 0 2 M 45 135 G 2 0 M 61 183 G 1 0 M 2 6 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2880 6477 571 + . gene_id 2 ; sequence gi|350425429|ref|XP_003494119.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2880 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2880 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 0 ; deletions 3 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6477 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6477 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2880 6477 571 + . alignment_id 2 ; Query gi|350425429|ref|XP_003494119.1| ; Align 2880 150 105 ; Align 3391 185 135 ; Align 3526 232 183 ; Align 3709 294 6 ; Align 4172 296 276 ; Align 6418 388 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425429|ref|XP_003494119.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 570 Query range: 147 -> 405 Target range: 32386 -> 34313 148 : LeuIleThrAsnAlaGlyLysAsnLysSerGluArgIleLeuProPheAsnValTrpLeu : 167 ::::::...||| !|||||||||:!!|||!!:||| !! ! !!:!:!!:!!|||||| IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 32387 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 32444 168 : AsnLeuProValSerIleSerProTyrTyrGluIleGlyPheLeuIleGln >>>> Ta : 185 :!!||||||:!!|||:!!!!!||||||||||||||| ::!:!!|||||| AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGln++ 32445 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGgt....... : 32500 186 : rget Intron 1 >>>> ThrIleSerLeuTyrTyrIleAlaValSerTyrPheCysP : 198 307 bp .!!:!!|||:!!||| ! :!!!.!|||!!!|||.!!|||| ++AlaLeuSerValTyrGlnValGlyValCysTyrLeuCysP 32501 : ..................agGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCT : 32844 199 : heAspAsnValPheCysIleLeuAlaValHisLeuThrGlyGlnPheArgIleLeuArgT : 218 ||||||||:::||| |||:::..!:!!|||:!!.!!||||||||||||||||||!:!| heAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnT 32845 : ttgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAAT : 32904 219 : yrArgPheAlaLysLeuCysAspMetGluHisGlnIleThrGluGluAspThrGlyLeuM : 238 |||||.!!|||!!.:!!! ! !:!:....!. !:!:! !....!.|||!.! ! !! yrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerAsnAspAsnThrSerT 32905 : ACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACAAGCA : 32964 239 : etIleThrLysHisValHisThrPheTyrGluGlnLeuLysLeuTyrIleArgGlnHisG : 258 ! ! ! !:!! !.!.! !! !||| :!!!!!||| !! !|||!:!||||||| hrAlaGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisG 32965 : CGGCTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATC : 33024 259 : lnThrLeuIleAspPheCysAsnArgLeuGluAspValTyrThrMetLeuIlePheGlyG : 278 ||.!!||||||:::||||||... ||||||!!:|||!:!|||:!::!!:!!.!!|||| lnAlaLeuIleGluPheCysGluIleLeuGluGluValPheThrValIleValLeuGlyG 33025 : AGGCACTaattgaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGAC : 33084 279 : lnValLeuValPheSerValLeuIleCysLeuPheAlaTyrGlnGlyLeuVal >>>> : 296 ||||||||:!!||||||:!!:!!||||||!!! !!.!|||:!!! !|||:!! lnValLeuMetPheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeu++ 33085 : AAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGgt..... : 33140 297 : Target Intron 2 >>>> ValAlaAlaProPheAlaArgArgSerIlePheValPh : 308 406 bp :!!.!! !||||||! ! !||| ! !|||..!! ++IleThrLeuProPheGluSerArgValAlaPheThrCy 33141 : ....................agATAACGTTACCATTTGAATCGCGCGTTGCTTTCACGTG : 33580 309 : eLeuLeuValGlySerMetAlaLeuLeuPheMetPheThrTyrSerCysAspGlyValIl : 328 !!!!|||:!! !.!!:!!::!! !|||!::||||||||||||||||||:!! !!:!!! sPheLeuIleThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAsnCysIleTh 33581 : CTTCTTGATTACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCAATTGCATAAC : 33640 329 : eGluHisSerGluLysValAlaIleGlyAlaTyrSerAlaLeuTrpThrIleMetProMe : 348 ! !.!.||| !!!.:!!||| !..!!.!|||:!!!.!! !|||! !! !:!:||||| rThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMe 33641 : AACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAAT : 33700 349 : tAsnLysProGlyArgMetLeuArgAsnAspLeuIleMetValIleGluArgSerArgAr : 368 |:::||| |||::::::||||||!!.|||||| !:!!:!!||| !|||:!!||||| tAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgAr 33701 : ggataaatttggaaaactgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGAGACG : 33760 369 : gValCysCysLeuThrAlaAsnAsnPhePheProValSerLeuGluThrTyrThrThr : 388 | !! !..!||||||||| !...|||||| !!:!!!!!|||||||||!:!|||! ! gProSerAlaLeuThrAlaCysGlyPhePheSerIleThrLeuGluThrPheThrLys++ 33761 : ACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTACTAAGgt : 33820 389 : >>>> Target Intron 3 >>>> IleLeuSerThrAlaValSerTyrPheThrLeu : 398 440 bp |||:!!||||||:!!:!!||||||||||||||| ++IleMetSerThrSerMetSerTyrPheThrLeu 33821 : .........................agATCATGAGTACATCAATGTCGTATTTCACCCTA : 34290 399 : LeuArgAsnAsnValGluAsp : 405 |||!:!.!.!:!!.!|||||| LeuLysGlnSerAlaGluAsp 34291 : CTAAAACAAAGTGCCGAGGAC : 34313 vulgar: gi|350425429|ref|XP_003494119.1| 147 405 . KQ414828.1 32386 34313 + 570 M 37 111 5 0 2 I 0 303 3 0 2 M 111 333 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32387 34313 570 + . gene_id 3 ; sequence gi|350425429|ref|XP_003494119.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32387 32497 . + . KQ414828.1 exonerate:protein2genome:local exon 32387 32497 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32498 32499 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32498 32804 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32803 32804 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32805 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32805 33137 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 3 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34313 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34313 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32387 34313 570 + . alignment_id 3 ; Query gi|350425429|ref|XP_003494119.1| ; Align 32387 148 111 ; Align 32805 185 333 ; Align 33544 296 276 ; Align 34260 388 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425429|ref|XP_003494119.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 555 Query range: 147 -> 405 Target range: 22307 -> 24193 148 : LeuIleThrAsnAlaGlyLysAsnLysSerGluArgIleLeuProPheAsnValTrpLeu : 167 ::::::...||| !|||||||||:!!|||!!:||| !! ! !!:!:!!:!!|||||| IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 22308 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 22365 168 : AsnLeuProValSerIleSerProTyrTyrGluIleGlyPheLeuIleGln >>>> Ta : 185 :!!||||||:!!|||:!!!!!||||||||||||||| ::!:!!|||||| AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGln++ 22366 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGgt....... : 22421 186 : rget Intron 1 >>>> ThrIleSerLeuTyrTyrIleAlaValSerTyrPheCysP : 198 307 bp .!!:!!|||:!!||| ! :!!::!!.!!!!|||.!!|||| ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysP 22422 : ..................agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCt : 22765 199 : heAspAsnValPheCysIleLeuAlaValHisLeuThrGlyGlnPheArgIleLeuArgT : 218 ||||| :::||| ||||||...:!!|||:!!.!!||||||||||||||||||!:!| heAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnT 22766 : ttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAAT : 22825 219 : yrArgPheAlaLysLeuCysAspMetGluHisGlnIleThrGluGluAspThrGlyLeuM : 238 |||||.!!|||!!.:!!! ! !:!:....!. !:!:! !......!!:!.! ! !! yrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSerT 22826 : ACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCA : 22885 239 : etIleThrLysHisValHisThrPheTyrGluGlnLeuLysLeuTyrIleArgGlnHisG : 258 ! ! !:!! !.!.! !! !||| :!!!!!||| !! !|||!:!||||||| hrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisG 22886 : CAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATC : 22945 259 : lnThrLeuIleAspPheCysAsnArgLeuGluAspValTyrThrMetLeuIlePheGlyG : 278 ||.!!||||||!!:|||||| ! !||||||!!:|||!:!|||:!::!!:!!.!!|||| lnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleValLeuGlyG 22946 : AGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGAC : 23005 279 : lnValLeuValPheSerValLeuIleCysLeuPheAlaTyrGlnGlyLeuVal >>>> : 296 ||||||||:!!! !|||:!!|||||||||!!!.!!!.!||||||! !|||:!! lnValLeuMetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeu++ 23006 : AAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGgt..... : 23061 297 : Target Intron 2 >>>> ValAlaAlaProPheAlaArgArgSerIlePheValPh : 308 492 bp :!! ! ! !!|||! ! !||| ! !|||!.!! ++IleLysLeuSerPheGluSerArgValAlaPheAlaCy 23062 : ....................agATAAAGTTATCATTTGAATCGCGCGTTGCTTTCGCGTG : 23587 309 : eLeuLeuValGlySerMetAlaLeuLeuPheMetPheThrTyrSerCysAspGlyValIl : 328 !!!!|||:!! !.!!|||::!! !|||!::||||||||||||||||||||| !!:!!! sPheLeuMetMetGlyMetSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleTh 23588 : CTTCTTGATGATGGGCATGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCATAAC : 23647 329 : eGluHisSerGluLysValAlaIleGlyAlaTyrSerAlaLeuTrpThrIleMetProMe : 348 ! !.!.||| !!!.:!!||| !..!!.!|||:!!!.!! !|||! !! !:!:||||| rThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMe 23648 : AACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAAT : 23707 349 : tAsnLysProGlyArgMetLeuArgAsnAspLeuIleMetValIleGluArgSerArgAr : 368 |:!!||| !|||!:!:!!||||||!!.!!:||| !|||:!!||| !|||:!!||||| tAspLysPheGlyLysLeuLeuArgLysGluLeuGlnMetLeuIleLeuArgAlaArgAr 23708 : GGACAAATTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGGGCGAGACG : 23767 369 : gValCysCysLeuThrAlaAsnAsnPhePheProValSerLeuGluThrTyrThrThr : 388 | !! !..!||||||||| !...|||||| !!:!!||||||||||||!:!|||! ! gProSerAlaLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 23768 : ACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt : 23827 389 : >>>> Target Intron 3 >>>> IleLeuSerThrAlaValSerTyrPheThrLeu : 398 313 bp |||:!!||||||:!!:!!||||||||||||||| ++IleMetSerThrSerMetSerTyrPheThrLeu 23828 : .........................agATCATGAGTACATCAATGTCGTATTTCACATTA : 24170 399 : LeuArgAsnAsnValGluAsp : 405 |||!:!.!. !:!!|||||| LeuLysGlnCysIleGluAsp 24171 : TTAAAACAATGTATCGAGGAC : 24193 vulgar: gi|350425429|ref|XP_003494119.1| 147 405 . KQ414828.1 22307 24193 + 555 M 37 111 5 0 2 I 0 303 3 0 2 M 111 333 5 0 2 I 0 488 3 0 2 M 92 276 5 0 2 I 0 309 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22308 24193 555 + . gene_id 4 ; sequence gi|350425429|ref|XP_003494119.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22308 22418 . + . KQ414828.1 exonerate:protein2genome:local exon 22308 22418 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22419 22420 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22419 22725 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 23058 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23059 23060 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23059 23550 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 23549 23550 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 23551 23826 . + . KQ414828.1 exonerate:protein2genome:local exon 23551 23826 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23827 23828 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23827 24139 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 24138 24139 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 24140 24193 . + . KQ414828.1 exonerate:protein2genome:local exon 24140 24193 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22308 24193 555 + . alignment_id 4 ; Query gi|350425429|ref|XP_003494119.1| ; Align 22308 148 111 ; Align 22726 185 333 ; Align 23551 296 276 ; Align 24140 388 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425429|ref|XP_003494119.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 255 Query range: 181 -> 297 Target range: 37859 -> 38207 182 : LeuIleGlnThrIleSerLeuTyrTyrIleAlaValSerTyrPheCysPheAspAsnVal : 201 |||! |||.!!:!!|||:!!||| ! :!!::!!.!!!!|||.!!||||||||| ::: LeuThrGlnAlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIle 37860 : ctCACGCAGGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatt : 37917 202 : PheCysIleLeuAlaValHisLeuThrGlyGlnPheArgIleLeuArgTyrArgPheAla : 221 ||| ||||||...:!!|||:!!.!!||||||||||||||||||!:!||||||.!!||| PhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAla 37918 : tttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCC : 37977 222 : LysLeuCysAspMetGluHisGlnIleThrGluGluAspThrGlyLeuMetIleThrLys : 241 !!.:!!! ! !:!:....!. !:!:! !......!!:!.! ! !! ! ! ! AsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSerThrAspGluLeu 37978 : AATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAATTA : 38037 242 : HisValHisThrPheTyrGluGlnLeuLysLeuTyrIleArgGlnHisGlnThrLeuIle : 261 :!! !.!.! !! !||| :!!!!!||| !! !|||!:!|||||||||.!!|||||| TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 38038 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATT : 38097 262 : AspPheCysAsnArgLeuGluAspValTyrThrMetLeuIlePheGlyGlnValLeuVal : 281 !!:|||||| ! !||||||!!:|||!:!|||:!::!! !.!!||||||||||||:!! GluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnValLeuMet 38098 : GAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCTAATG : 38157 282 : PheSerValLeuIleCysLeuPheAlaTyrGlnGlyLeuValValAla : 297 ||||||:!!|||||||||!!! !!!.!||||||!.!|||:!!|||::! PheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeuValSer 38158 : TTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGGTGAGT : 38207 vulgar: gi|350425429|ref|XP_003494119.1| 181 297 . KQ414828.1 37859 38207 + 255 M 116 348 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37860 38207 255 + . gene_id 5 ; sequence gi|350425429|ref|XP_003494119.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37860 38207 . + . KQ414828.1 exonerate:protein2genome:local exon 37860 38207 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37860 38207 255 + . alignment_id 5 ; Query gi|350425429|ref|XP_003494119.1| ; Align 37860 182 348 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425429|ref|XP_003494119.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 250 Query range: 184 -> 296 Target range: 18039 -> 18384 185 : ThrIleSerLeuTyrTyrIleAlaValSerTyrPheCysPheAspAsnValPheCysIle : 204 ..!:!:|||||||||:!!|||!.!|||||||||||||||||||||||| ...|||||| ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIle 18040 : gtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgcttcgacaattttttatgcatC : 18097 205 : LeuAlaValHisLeuThrGlyGlnPheArgIleLeuArgTyrArgPheAlaLysLeuCys : 224 :!! !:!!||| !.!! !|||||||||:!!|||!:!||||||.!.|||!!.:!! ! MetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnTyrArgMetAlaAsnMetThr 18098 : ATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAATACCGAATGGCGAATATGACC : 18157 225 : AspMetGluHisGlnIleThrGluGlu<-><-><->AspThrGlyLeuMetIleThrLys : 241 |||:!::!! ::: :::||| ! |||.!!:!!! .!! AspLeuLysAspLysGluArgLysGluArgAsnMetLysThrSerValSerSerAlaCys 18158 : GATTTAAAGGacaaagagaggaaagagagaaatatgaAGACAAGTGTGAGTTCGGCGTGC : 18217 242 : HisValHisThrPheTyrGluGlnLeuLysLeuTyrIleArgGlnHisGlnThrLeuIle : 261 !!.! !! !|||.!. |||||| !||||||||||||||||||!.!|||||| PheAlaThrGluCysTyrAsnValLeuLysAspTyrIleArgGlnHisGlnAsnLeuIle 18218 : TTTGCAACAGAATGTTACAACGTTCTCAAAGATTATATCAGACAGCATCAGAACCTGATT : 18277 262 : AspPheCysAsnArgLeuGluAspValTyrThrMetLeuIlePheGlyGlnValLeuVal : 281 ! !!:!||||||!:!|||||| ! |||!:!!.!!!::!!:!!.!.||||||:!!|||:!! AlaTyrCysAsnLysLeuGluLysValPheAsnIleIleValLeuGlyGlnLeuLeuMet 18278 : GCTTATTGCAACAAACTCGAGAAAGTGTTCAATATCATTGTTCTGGGGCAATTGTTAATG : 18337 282 : PheSerValLeuIleCysLeuPheAlaTyrGlnGlyLeuValVal : 296 ||||||:!!|||||||||||| !!.!!:!||| !|||:!!||| PheSerMetLeuIleCysLeuAspGlyPheGlnIleLeuMetVal 18338 : TTCAGCATGTTGATCTGTCTCGATGGATTTCAGATACTTATGGTT : 18384 vulgar: gi|350425429|ref|XP_003494119.1| 184 296 . KQ414828.1 18039 18384 + 250 M 49 147 G 0 9 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 18040 18384 250 + . gene_id 6 ; sequence gi|350425429|ref|XP_003494119.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 18040 18384 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18384 . + . insertions 9 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 18040 18384 250 + . alignment_id 6 ; Query gi|350425429|ref|XP_003494119.1| ; Align 18040 185 147 ; Align 18196 234 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425429|ref|XP_003494119.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 242 Query range: 287 -> 391 Target range: 19332 -> 19644 288 : LeuPheAlaTyrGlnGlyLeuValValAlaAlaProPheAlaArgArgSerIlePheVal : 307 :!! !!.!||| ! ! !||| !!.! !.!!||| ! !! !||| !||||||:!! MetThrValTyrTyrValLeuGlnAlaAsnThrProThrArgThrArgLeuIlePheIle 19333 : ATGACTGTATATTACGTTTTACAGGCAAATACACCTACCAGAACCCGACTGATTTTCATC : 19390 308 : PheLeuLeuValGlySerMetAlaLeuLeuPheMetPheThrTyrSerCysAspGlyVal : 327 |||! !:!!! !!.!!!!|||..!! !|||.!.||||||||||||||||||||| !!:!! PheHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIle 19391 : TTTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGCTGCGACTGCATC : 19450 328 : IleGluHisSerGluLysValAlaIleGlyAlaTyrSerAlaLeuTrpThrIleMetPro : 347 |||..!.!.||| !!....!||| !.!!.!||||||!.!! !||||||:!!:!:||| IleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyProTrpThrLeuLeuPro 19451 : ATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGACACTTTTACCA : 19510 348 : MetAsnLysProGlyArgMetLeuArgAsnAspLeuIleMetValIleGluArgSerArg : 367 |||!:! ! !|||!:!|||:!!|||!!.||||||!!::!:|||||| !||||||!!! MetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuValIleMetArgSerSer 19511 : ATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCATGAGATCGAGC : 19570 368 : ArgValCysCysLeuThrAlaAsnAsnPhePheProValSerLeuGluThrTyrThrThr : 387 ! !|||||||||||||||!.....|||||| !||||||||||||||||||||| ! ValProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGluThrTyrThrGly 19571 : GTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAACGTACACAGGG : 19630 388 : IleLeuSerThr : 391 :!!:!! !||| ValIleValThr 19631 : GTAATCGTCACC : 19644 vulgar: gi|350425429|ref|XP_003494119.1| 287 391 . KQ414828.1 19332 19644 + 242 M 104 312 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 19333 19644 242 + . gene_id 7 ; sequence gi|350425429|ref|XP_003494119.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 19333 19644 . + . KQ414828.1 exonerate:protein2genome:local exon 19333 19644 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 19333 19644 242 + . alignment_id 7 ; Query gi|350425429|ref|XP_003494119.1| ; Align 19333 288 312 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425429|ref|XP_003494119.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 67 -> 149 Target range: 16192 -> 16438 68 : LeuTyrValThrThrAsnIleLeuThrValIleMetGlyLeuIleLysIleCysIleIle : 87 ||||||..!.!! !|||||||||:!!:!!! !!!: !!!!:!!|||||| !:!!:!: LeuTyrThrAlaCysAsnIleLeuSerLeuThrIleProPheLeuLysIleLeuValLeu 16193 : TTATATACTGCATGCAACATTTTATCGTTAACAATACCGTTTCTCAAGATACTCGTCTTG : 16250 88 : LeuMetHisLysArgGluPheIleSerLeuIleThrTyrThrGlnArgAsnPheTrpAsn : 107 ||| ||||||...:::|||... |||||| !:!! !||||||.!.|||! !:!! LeuAlaHisLysAsnAspPhePheHisLeuIleLeuHisLeuGlnArgGluPheLeuHis 16251 : CTTGCAcacaaaaatgatttttttcatttgattcTGCACCTACAACGAGAATTCTTGCAT : 16310 108 : ValAsnTyrAspThrArgGluLysGluIleLeuLysAsnCysArgLysThrCysThrPhe : 127 !.!:!!|||||| ! !||||||:!!|||||| ..!|||!:!::: !||||||||| AlaAspTyrAspAspTyrGluLysLysIleLeuLeuGlyCysGlnArgGlnCysThrPhe 16311 : GCAGATTACGACGACTACGAGAAAAAGATTTTGCTCGGTTGCCAACGTCAATGTACCTTC : 16370 128 : PheValCysSerValSerAlaIleGlyIleCysAlaMetLeuAlaTyrLeuSerThrPro : 147 |||||||||! ! !!!!! !.!! !! ! ! .!!:!::!!:!!|||:!! !!.!||| PheValCysPhePheThrLeuPheThrLysGlyThrValIleSerTyrIleValAsnPro 16371 : TTCGTTTGTTTCTTCACACTTTTCACTAAAGGAACTGTTATCTCGTACATCGTTAATCCG : 16430 148 : LeuIle : 149 |||||| LeuIle 16431 : CTTATT : 16438 vulgar: gi|350425429|ref|XP_003494119.1| 67 149 . KQ414828.1 16192 16438 + 178 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 16193 16438 178 + . gene_id 8 ; sequence gi|350425429|ref|XP_003494119.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 16193 16438 . + . KQ414828.1 exonerate:protein2genome:local exon 16193 16438 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 16193 16438 178 + . alignment_id 8 ; Query gi|350425429|ref|XP_003494119.1| ; Align 16193 68 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425429|ref|XP_003494119.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 306 -> 388 Target range: 38514 -> 38760 307 : ValPheLeuLeuValGlySerMetAlaLeuLeuPheMetPheThrTyrSerCysAspGly : 326 :!!||| ! !:!! !.!!:!!::!! !|||!::||||||||||||||||||||| !! MetPheAlaThrMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCys 38515 : ATGTTCGCAACGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGC : 38572 327 : ValIleGluHisSerGluLysValAlaIleGlyAlaTyrSerAlaLeuTrpThrIleMet : 346 :!!! ! !.!.||| !!!.:!!||| !..!!.!|||:!!!.!! !|||! !! !:!: IleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeu 38573 : ATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTA : 38632 347 : ProMetAsnLysProGlyArgMetLeuArgAsnAspLeuIleMetValIleGluArgSer : 366 ||||||:::||| |||::::::||||||!!.|||||| !:!!:!!||| !|||:!! ProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAla 38633 : CCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCG : 38692 367 : ArgArgValCysCysLeuThrAlaAsnAsnPhePheProValSerLeuGluThrTyrThr : 386 |||||| !! !! !||||||||| !...|||||| !!:!!||||||||||||!:!||| ArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThr 38693 : AGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACT : 38752 387 : ThrIle : 388 ! !:!! LysVal 38753 : AAGGTA : 38760 vulgar: gi|350425429|ref|XP_003494119.1| 306 388 . KQ414828.1 38514 38760 + 175 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38515 38760 175 + . gene_id 9 ; sequence gi|350425429|ref|XP_003494119.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38515 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38515 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38515 38760 175 + . alignment_id 9 ; Query gi|350425429|ref|XP_003494119.1| ; Align 38515 307 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425429|ref|XP_003494119.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 290 -> 388 Target range: 28490 -> 28784 291 : TyrGlnGlyLeuValValAlaAlaProPheAlaArgArgSerIlePheValPheLeuLeu : 310 |||.!.||| ! ! ! ! ! !!|||! ! !!||| ! !!!.!.!! !!!!! ! TyrAsnGlyThrGlnAsnLysLeuSerPheGluTrpArgValAlaLeuAlaCysPheSer 28491 : TATAATGGCACACAGAATAAGTTATCATTTGAATGGCGCGTTGCTTTGGCGTGCTTCTCG : 28548 311 : ValGlySerMetAlaLeuLeuPheMetPheThrTyrSerCysAspGlyValIleGluHis : 330 :!! !.!!:!!::!! !|||!::||||||||||||||||||||| !!:!!! ! !.!. MetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGlu 28549 : ATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAA : 28608 331 : SerGluLysValAlaIleGlyAlaTyrSerAlaLeuTrpThrIleMetProMetAsnLys : 350 ||| !!!.:!!||| !..!!.!|||:!!!.!! !|||! !! !:!:||||||:::||| SerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLys 28609 : AGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaa : 28668 351 : ProGlyArgMetLeuArgAsnAspLeuIleMetValIleGluArgSerArgArgValCys : 370 |||::::::||||||!!.|||||| !:!!:!!||| !|||:!!|||||| !! ! PheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSer 28669 : tttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCC : 28728 371 : CysLeuThrAlaAsnAsnPhePheProValSerLeuGluThrTyrThrThrIle : 388 ! !||||||||| !...|||||| !!:!!||||||||||||!:!|||! !:!! SerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 28729 : TCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 28784 vulgar: gi|350425429|ref|XP_003494119.1| 290 388 . KQ414828.1 28490 28784 + 174 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28491 28784 174 + . gene_id 10 ; sequence gi|350425429|ref|XP_003494119.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28491 28784 . + . KQ414828.1 exonerate:protein2genome:local exon 28491 28784 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28491 28784 174 + . alignment_id 10 ; Query gi|350425429|ref|XP_003494119.1| ; Align 28491 291 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425429|ref|XP_003494119.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 147 -> 186 Target range: 17818 -> 17935 148 : LeuIleThrAsnAlaGlyLysAsnLysSerGluArgIleLeuProPheAsnValTrpLeu : 167 :!!:!:...||| |||||||||:::||||||||||||||||||||||||:!!|||:!! IleLeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpVal 17819 : ATTTTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTC : 17876 168 : AsnLeuProValSerIleSerProTyrTyrGluIleGlyPheLeuIleGlnThrIle : 186 |||||||||:!!|||!!:!!!||||||||||||||| ||| :::|||..!::: AsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGlnValLeu 17877 : AACTTGCCATTATCAATGACGCCATATTACgaaataactttttcattaCAGGTAttg : 17935 vulgar: gi|350425429|ref|XP_003494119.1| 147 186 . KQ414828.1 17818 17935 + 146 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17819 17935 146 + . gene_id 11 ; sequence gi|350425429|ref|XP_003494119.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 17819 17935 . + . KQ414828.1 exonerate:protein2genome:local exon 17819 17935 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17819 17935 146 + . alignment_id 11 ; Query gi|350425429|ref|XP_003494119.1| ; Align 17819 148 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425429|ref|XP_003494119.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 147 -> 189 Target range: 27339 -> 27465 148 : LeuIleThrAsnAlaGlyLysAsnLysSerGluArgIleLeuProPheAsnValTrpLeu : 167 ::::::...||| !|||||||||:!!|||!!:||| !! ! !|||:!!:!!|||!!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPhe 27340 : attttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTC : 27397 168 : AsnLeuProValSerIleSerProTyrTyrGluIleGlyPheLeuIleGlnThrIleSer : 187 :!!||||||:!!|||:!!!!!||||||||||||||| ::!:!!||||||..!:!! !! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 27398 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 27457 188 : LeuTyr : 189 :!!!:! IlePhe 27458 : ATTTTC : 27465 vulgar: gi|350425429|ref|XP_003494119.1| 147 189 . KQ414828.1 27339 27465 + 117 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27340 27465 117 + . gene_id 12 ; sequence gi|350425429|ref|XP_003494119.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27340 27465 . + . KQ414828.1 exonerate:protein2genome:local exon 27340 27465 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27340 27465 117 + . alignment_id 12 ; Query gi|350425429|ref|XP_003494119.1| ; Align 27340 148 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425429|ref|XP_003494119.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 147 -> 189 Target range: 37450 -> 37576 148 : LeuIleThrAsnAlaGlyLysAsnLysSerGluArgIleLeuProPheAsnValTrpLeu : 167 ::: ...||| !|||||||||:!!|||!!:||| !! ! !!:!:!!:!!|||||| IleSerAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 37451 : atttcagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 37508 168 : AsnLeuProValSerIleSerProTyrTyrGluIleGlyPheLeuIleGlnThrIleSer : 187 :!!||||||:!!||||||!!!||||||||||||||| ::!:!!||||||..!:!! !! AspLeuProLeuSerIleThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 37509 : GATCTACCATTATCCATAACAccatattatgaaattacttACATAATACAGGTATTACCA : 37568 188 : LeuTyr : 189 :!!!:! IlePhe 37569 : ATTTTC : 37576 vulgar: gi|350425429|ref|XP_003494119.1| 147 189 . KQ414828.1 37450 37576 + 115 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37451 37576 115 + . gene_id 13 ; sequence gi|350425429|ref|XP_003494119.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37451 37576 . + . KQ414828.1 exonerate:protein2genome:local exon 37451 37576 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37451 37576 115 + . alignment_id 13 ; Query gi|350425429|ref|XP_003494119.1| ; Align 37451 148 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425900|ref|XP_003494268.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 804 Query range: 183 -> 402 Target range: 10831 -> 13152 184 : IleMetSerLeuSerTyrIleGlyIleCysTyrPheCysPheAspAsnValPheCysVal : 203 ||| .!!|||! !!:!! !|||||||||||||||||||||||||||:!!||||||:!! IleSerGlyLeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIle 10832 : ATTTCAGGACTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATC : 10889 204 : MetAlaIleHisLeuGlyGlyGlnPheArgIleLeuArgTyrArgPheSerGluLeuCys : 223 |||::!:!:||||||.!!||||||||||||||||||!:!||||||!!.!!!:!!|||! ! MetSerValHisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSer 10890 : ATGAGCGTGCATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCC : 10949 224 : AsnIleLysTyrGlnIleSerGluGlnAspLysMetSerIleLeuThrLysHisValHis : 243 :!!:!!:!!|||||||||||||||:::::: |||:!!||| ! ! !..!!.! AspValGlnTyrGlnIleSerGluLysAsnMetGluSerValLeuGluAspCysThrArg 10950 : GACGTACAATATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGT : 11009 244 : ArgThrTyrGluThrPheArgLysTyrValGlnGlnHisGlnAlaLeuIleAsnTyrTyr : 263 |||:!!||||||! !|||!:!!..||||||!:!|||||||||.!!||||||:!!|||||| ArgSerTyrGluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyr 11010 : AGATCTTACGAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTAC : 11069 264 : AsnSerLeuGluAsnValTyrThrValIleIleLeuIleGlnValLeuValPheSerVal : 283 .!.!.!||||||:!!||||||||| !||||||||| |||||||||:!!||||||||| GluLysLeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerVal 11070 : GAGAAGCTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTG : 11129 284 : LeuIleCysLeuPheGlyTyrGlnValLeuLeu >>>> Target Intron 1 >>>> : 295 ||||||||||||||||||||||||:!!|||||| 1305 bp LeuIleCysLeuPheGlyTyrGlnIleLeuLeu++ 11130 : TTAATTTGCCTCTTTGGTTATCAGATATTATTGgt......................... : 11167 296 : AlaAsnThrAsnSerAlaArgArgSerIlePheValPheLeuLeuIleGlyAlaLeuS : 314 |||||||||::! !||||||||||||||||||:!!||||||:!! !||||||:!! ++AlaAsnThrSerLeuAlaArgArgSerIlePheMetPheLeuIleCysGlyAlaMetV 11168 : agGCTAATACTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGG : 12527 315 : erLeuLeuPheMetPheThrTyrSerCysAspAspValIleGluHisSerAspAsnValA : 334 !|||||||||||||||||||||||||||:!! |||||||||!!.|||||||||:!!| alLeuLeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleA 12528 : TTTTATTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTG : 12587 335 : laIleGlyAlaTyrSerAlaLeuTrpThrIleMetProMetAsnLysHisGlyLysMetL : 354 ||.!!!.!||||||||||||||||||||| !||||||||||||||| !||||||! !| laPheAlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysL 12588 : CTTTTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGC : 12647 355 : euArgAsnAspLeuIleMetThrIleGluArgSerArgArgValCysCysLeuThrAlaA : 374 |||||:!!||||||||||||..!|||! !||||||||||||||||||||||||||||||| euArgHisAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaA 12648 : TACGGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGA : 12707 375 : snGlyPhePheProValSerLeuGluThrTyrThrLys >>>> Target Intron 2 : 387 |||||||||||||||||||||||||||||||||||! ! 359 bp snGlyPhePheProValSerLeuGluThrTyrThrThr++ 12708 : ATGGATTTTTCCCTGTGTCCTTAGAAACTTATACTACGgt.................... : 12748 388 : >>>> IleLeuSerThrAlaMetSerTyrPheThrLeuLeuSerAsnAsnVal : 402 ||||||||||||||| !||||||||||||||||||!!!||||||||| ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnVal 12749 : .....agattttgAGTACCGCGGCGTCGTACTTCACATTATTGAGAAATAACGTA : 13152 vulgar: gi|350425900|ref|XP_003494268.1| 183 402 . KQ414828.1 10831 13152 + 804 M 111 333 5 0 2 I 0 1301 3 0 2 M 92 276 5 0 2 I 0 355 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10832 13152 804 + . gene_id 1 ; sequence gi|350425900|ref|XP_003494268.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 10832 11164 . + . KQ414828.1 exonerate:protein2genome:local exon 10832 11164 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 11165 11166 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 11165 12469 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12468 12469 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 12470 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12745 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13104 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13103 13104 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 13105 13152 . + . KQ414828.1 exonerate:protein2genome:local exon 13105 13152 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10832 13152 804 + . alignment_id 1 ; Query gi|350425900|ref|XP_003494268.1| ; Align 10832 184 333 ; Align 12470 295 276 ; Align 13105 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425900|ref|XP_003494268.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 535 Query range: 147 -> 400 Target range: 2873 -> 5250 148 : PheIleAlaGlnIleGlyAsnAsnGluSerThrArgGluLeuProPheAsnMetTrpIleGl : 168 ||| !|||...||||||...||||||||| !||| !||| ! !!|||.!.||||||! PheSerAlaSerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAs 2874 : TTCTCAGCAAgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGA : 2934 169 : yIle<->LeuSerGlnSerProTyrTyrGluLeuIlePhePheAlaGln >>>> Target : 184 !:!: :!!!!! !!!||||||||||||::::::||| !||| 4 pLeuProIleThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2935 : CCTGCCGATAACCATCACACCATactatgaaatattatttacgaTACAGgt........... : 2987 185 : Intron 1 >>>> IleMetSerLeuSerTyrIleGlyIleCysTyrPheCysPheAspA : 199 06 bp |||.!.! !:!!! !|||:!! !!||| !!|||.!!|||.!!|||| ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspA 2988 : ..............agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACA : 3436 200 : snValPheCysValMetAlaIleHisLeuGlyGlyGlnPheArgIleLeuArgTyrArgPhe : 219 || !!.!.|||:!!!!: !:!!||| !!.! !|||||||||||||||!:!||||||.!. snPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeu 3437 : ATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTG : 3496 220 : SerGluLeuCysAsnIleLysTyrGlnIleSerGluGlnAspLysMetSerIleLeuThrLy : 240 |||.!.:!!|||..! !!!. ! !::! ...::: ...||| ::: !!.. SerAsnValCysGlyAlaAsnGluArgSerAspLysIleSerLysLysThr------ProSe 3497 : TCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaaaca------CCGTC : 3553 241 : sHisValHisArgThrTyrGluThrPheArgLysTyrValGlnGlnHisGlnAlaLeuIleA : 261 .:!! ! !!..! !|||! ! !|||!:!!!.! !:!!|||||||||||||||||||||. rAsnSerAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleG 3554 : CAATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAG : 3616 262 : snTyrTyrAsnSerLeuGluAsnValTyrThrValIleIleLeuIleGlnValLeuValPhe : 281 !.|||! !|||!.!|||:!!.!.|||!:! !:!!.!!:!:||| !|||||||||:!!||| luTyrCysAsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPhe 3617 : AATACTGTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTC : 3676 282 : SerValLeuIleCysLeuPheGlyTyrGlnValLeuLeuAlaAsnThrAsnSerAlaArgAr : 302 |||:!!|||!!:|||||| !|||||| !|||:!!:!!::!!.. ! !!!.! !!:!|| SerLeuLeuMetCysLeuAspGlyTyrLeuValMetValSerArgTyrTyrLysIleGlnAr 3677 : AGTTTGTTAATGTGCCTCGATGGATATTTGGTGATGGTTAGTAGGTATTACAAAATTCAACG : 3739 303 : gSerIlePheValPheLeuLeuIle{G} >>>> Target Intron 2 >>>> {ly}A : 312 |!:!|||...|||||||||... {|} 454 bp {||}. gAsnIleIleValPheLeuPheSer{G}-+ -+{ly}C 3740 : CAATATCAtagttttcttattttct{g}at.........................gg{GA}T : 4223 313 : laLeuSerLeuLeuPheMetPheThrTyrSerCysAspAspValIleGluHisSerAspAsn : 332 .!|||!!!! !|||!!.||||||||||||||||||||| !:!!|||..!.!.||| ||| ysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsn 4224 : GCCTGTGCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAAC : 4283 333 : ValAlaIleGlyAlaTyrSerAlaLeuTrpThrIleMetProMetAsnLysHisGlyLysMe : 353 ||||||! !!.! !|||..!..!! !|||! ! !:!!||||||:!!!:! !|||::!|| ValAlaAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMe 4284 : GTGGCCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAAT : 4346 354 : tLeuArgAsnAspLeuIleMetThrIleGluArgSerArgArgValCysCysLeuThrAlaA : 374 |||||||!!.||||||! !.!...!|||! !||||||||| ! !||||||||||||||| tLeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaC 4347 : GCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTT : 4409 375 : snGlyPhePheProValSerLeuGluThrTyrThrLys >>>> Target Intron 3 > : 387 !|||||||||||||||||||||||||||||||||..! 761 bp ysGlyPhePheProValSerLeuGluThrTyrThrSer++ 4410 : GTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt...................... : 4450 388 : >>> IleLeuSerThrAlaMetSerTyrPheThrLeuLeuSerAsn : 400 ||||||||||||||| !|||||||||||||||||| !!||| ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsn 4451 : ...agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTACGAAAC : 5250 vulgar: gi|350425900|ref|XP_003494268.1| 147 400 . KQ414828.1 2873 5250 + 535 M 22 66 G 0 3 M 14 42 5 0 2 I 0 402 3 0 2 M 53 159 G 2 0 M 72 216 S 0 1 5 0 2 I 0 450 3 0 2 S 1 2 M 75 225 5 0 2 I 0 757 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2874 5250 535 + . gene_id 2 ; sequence gi|350425900|ref|XP_003494268.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2874 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2874 2984 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3766 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3766 . + . insertions 0 ; deletions 2 KQ414828.1 exonerate:protein2genome:local splice5 3767 3768 . + . intron_id 2 ; splice_site "at" KQ414828.1 exonerate:protein2genome:local intron 3767 4220 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4219 4220 . + . intron_id 1 ; splice_site "GG" KQ414828.1 exonerate:protein2genome:local cds 4221 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4221 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 5208 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 5207 5208 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 5209 5250 . + . KQ414828.1 exonerate:protein2genome:local exon 5209 5250 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2874 5250 535 + . alignment_id 2 ; Query gi|350425900|ref|XP_003494268.1| ; Align 2874 148 66 ; Align 2943 170 42 ; Align 3391 184 159 ; Align 3550 239 216 ; Align 4223 312 225 ; Align 5209 387 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425900|ref|XP_003494268.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 501 Query range: 147 -> 390 Target range: 17818 -> 19644 148 : PheIleAlaGlnIleGlyAsnAsnGluSerThrArgGluLeuProPheAsnMetTrpIle : 167 .!!:!:|||...||||||...||||||||| !||| !||||||||||||||||||:!! IleLeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpVal 17819 : ATTTTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTC : 17876 168 : GlyIle<->LeuSerGlnSerProTyrTyrGluLeuIlePhePheAlaGln >>>> Ta : 184 ..!:!: ||||||..!!!!||||||||||||::: ||| ||| AsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln++ 17877 : AACTTGCCATTATCAATGACGCCATATTACgaaataactttttcattaCAGgt....... : 17932 185 : rget Intron 1 >>>> IleMetSerLeuSerTyrIleGlyIleCysTyrPheCysP : 197 110 bp ::!:!!||||||! !:!!||||||:!: !!|||||||||| ++ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysP 17933 : ..................aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgct : 18079 198 : heAspAsnValPheCysValMetAlaIleHisLeuGlyGlyGlnPheArgIleLeuArgT : 217 |||||||| ...|||::!||| !:!:||| !!.! !|||||||||:!!|||!:!| heAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnT 18080 : tcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAAT : 18139 218 : yrArgPheSerGluLeuCysAsnIleLysTyrGlnIleSerGluGlnAspLysMetSerI : 237 |||||.!.:!!.!.:!! !:!!:!!||| ::: :::::: ...|||..!! yrArgMetAlaAsnMetThrAspLeuLysAspLysGluArgLysGluArgAsnMetLysT 18140 : ACCGAATGGCGAATATGACCGATTTAAAGGacaaagagaggaaagagagaaatatgaAGA : 18199 238 : leLeuThrLys<-><-><->HisValHisArgThrTyrGluThrPheArgLysTyrValG : 254 ! !..!!.. !!.! ..! !|||.!...!.!!!:! ! |||:!!: hrSerValSerSerAlaCysPheAlaThrGluCysTyrAsnValLeuLysAspTyrIleA 18200 : CAAGTGTGAGTTCGGCGTGCTTTGCAACAGAATGTTACAACGTTCTCAAAGATTATATCA : 18259 255 : lnGlnHisGlnAlaLeuIleAsnTyrTyrAsnSerLeuGluAsnValTyrThrValIleI : 274 :!||||||||| !|||||| !|||! !|||!.!||||||!!.|||!:!!.!:!!|||: rgGlnHisGlnAsnLeuIleAlaTyrCysAsnLysLeuGluLysValPheAsnIleIleV 18260 : GACAGCATCAGAACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGTTCAATATCATTG : 18319 275 : leLeuIleGlnValLeuValPheSerValLeuIleCysLeuPheGlyTyrGlnValLeuL : 294 !!||| |||:!!|||:!!||||||:!!|||||||||||| !|||!:!|||:!!|||: alLeuGlyGlnLeuLeuMetPheSerMetLeuIleCysLeuAspGlyPheGlnIleLeuM 18320 : TTCTGGGGCAATTGTTAATGTTCAGCATGTTGATCTGTCTCGATGGATTTCAGATACTTA : 18379 295 : euAlaAsnThrAsn{Se} >>>> Target Intron 2 >>>> {r}AlaArgArgS : 303 !!!.!..!! !!..{||} 975 bp {|} !! !||| etValGlyMetArg{Se}-+ +-{r}ArgThrArgL 18380 : TGGTTGGTATGAGA{AG}tt.........................ac{C}AGAACCCGAC : 19381 304 : erIlePheValPheLeuLeuIleGlyAlaLeuSerLeuLeuPheMetPheThrTyrSerC : 323 !||||||:!!|||! !:!! !!.!..!:!!!!!! !|||.!.|||||||||||||||| euIlePheIlePheHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSerC 19382 : TGATTTTCATCTTTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGCT : 19441 324 : ysAspAspValIleGluHisSerAspAsnValAlaIleGlyAlaTyrSerAlaLeuTrpT : 343 ||||| !:!!|||..!.!.||| !:!..!||| !.!!.!||||||!.!! !|||| ysAspCysIleIleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyProTrpT 19442 : GCGACTGCATCATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGA : 19501 344 : hrIleMetProMetAsnLysHisGlyLysMetLeuArgAsnAspLeuIleMetThrIleG : 363 ||:!!:!:||||||!:! ! !!|||||||||:!!|||!!.||||||!!::!:..!||| hrLeuLeuProMetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuValIleM 19502 : CACTTTTACCAATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCA : 19561 364 : luArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePheProValSerLeuGluT : 383 !||||||!!! ! !|||||||||||||||!..||||||||| !||||||||||||| etArgSerSerValProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGluT 19562 : TGAGATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAA : 19621 384 : hrTyrThrLysIleLeuSerThr : 390 |||||||| !:!!:!! !||| hrTyrThrGlyValIleValThr 19622 : CGTACACAGGGGTAATCGTCACC : 19644 vulgar: gi|350425900|ref|XP_003494268.1| 147 390 . KQ414828.1 17818 19644 + 501 M 22 66 G 0 3 M 14 42 5 0 2 I 0 106 3 0 2 M 57 171 G 0 9 M 58 174 S 0 2 5 0 2 I 0 971 3 0 2 S 1 1 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17819 19644 501 + . gene_id 3 ; sequence gi|350425900|ref|XP_003494268.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17819 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17819 17929 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18395 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18395 . + . insertions 9 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18396 18397 . + . intron_id 2 ; splice_site "TT" KQ414828.1 exonerate:protein2genome:local intron 18396 19370 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 19369 19370 . + . intron_id 1 ; splice_site "AC" KQ414828.1 exonerate:protein2genome:local cds 19371 19644 . + . KQ414828.1 exonerate:protein2genome:local exon 19371 19644 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17819 19644 501 + . alignment_id 3 ; Query gi|350425900|ref|XP_003494268.1| ; Align 17819 148 66 ; Align 17888 170 42 ; Align 18040 184 171 ; Align 18220 241 174 ; Align 19372 300 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425900|ref|XP_003494268.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 494 Query range: 173 -> 401 Target range: 32774 -> 34304 174 : ProTyrTyrGluLeuIlePhePheAlaGlnIleMetSerLeuSerTyrIleGlyIleCys : 193 ||| ::: ||| ..!.!!||| !:!:|||:!!! ! ! :!!|||:!:||| ProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValGlyValCys 32775 : CCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTGGAGTGTGT : 32832 194 : TyrPheCysPheAspAsnValPheCysValMetAlaIleHisLeuGlyGlyGlnPheArg : 213 |||.!!||||||||||||:::||| :::|||..!:!!|||:!!!.!|||||||||||| TyrLeuCysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArg 32833 : TACCTTTGCTttgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGT : 32892 214 : IleLeuArgTyrArgPheSerGluLeuCysAsnIleLysTyrGlnIleSerGluGlnAsp : 233 ||||||!:!||||||.!!:!!.!.:!!! ..!:!!!.. ! !:!:!.!....!.||| IleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerAsnAsp 32893 : ATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAGAGCAATGAT : 32952 234 : LysMetSerIleLeuThrLysHisValHisArgThrTyrGluThrPheArgLysTyrVal : 253 !!.! |||! ! ! !:!! !.!.!:! !||| ! !|||!:!!!.! !:!! AsnThrSerThrAlaGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIle 32953 : AATACAAGCACGGCTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATT : 33012 254 : GlnGlnHisGlnAlaLeuIleAsnTyrTyrAsnSerLeuGluAsnValTyrThrValIle : 273 |||||||||||||||||||||...::: ... ||||||.!.|||!:!||||||||| GlnGlnHisGlnAlaLeuIleGluPheCysGluIleLeuGluGluValPheThrValIle 33013 : CAACAACATCAGGCACTaattgaattttgtgaaatactCGAAGAGGTATTCACGGTAATC : 33072 274 : IleLeuIleGlnValLeuValPheSerValLeuIleCysLeuPheGlyTyrGlnValLeu : 293 :!!||| !|||||||||:!!||||||:!!:!!||||||!!! !||||||:!!|||||| ValLeuGlyGlnValLeuMetPheSerIleIleIleCysPheAlaGlyTyrGluValLeu 33073 : GTACTCGGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTC : 33132 294 : Leu >>>> Target Intron 1 >>>> AlaAsnThrAsnSerAlaArgArgSerI : 304 ||| 406 bp !!.. ! ! !! ! !||| ! Leu++ ++IleThrLeuProPheGluSerArgValA 33133 : CTGgt.........................agATAACGTTACCATTTGAATCGCGCGTTG : 33571 305 : lePheValPheLeuLeuIleGlyAlaLeuSerLeuLeuPheMetPheThrTyrSerCysA : 324 !|||..!! !!!!|||||| !!.!:!!|||! !|||!::||||||||||||||||||: laPheThrCysPheLeuIleThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysA 33572 : CTTTCACGTGCTTCTTGATTACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCA : 33631 325 : spAspValIleGluHisSerAspAsnValAlaIleGlyAlaTyrSerAlaLeuTrpThrI : 344 !! !:!!! ! !.!.||| |||:!!||| !..!!.!|||:!!!.!! !|||! !! snCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleA 33632 : ATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAA : 33691 345 : leMetProMetAsnLysHisGlyLysMetLeuArgAsnAspLeuIleMetThrIleGluA : 364 !:!:||||||:::||| ||||||:::||||||!!.|||||| !:!! !||| !| snLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuA 33692 : ATTTACCAATggataaatttggaaaactgCTAAGAAAGGATTTACAAGTGCTCATCTTGA : 33751 365 : rgSerArgArgValCysCysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrT : 384 ||:!!|||||| !! !..!||||||||| !||||||||| !!:!!!!!|||||||||! rgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleThrLeuGluThrP 33752 : GGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATAACTCTCGAAACCT : 33811 385 : yrThrLys >>>> Target Intron 2 >>>> IleLeuSerThrAlaMetSerTy : 394 :!|||||| 440 bp |||:!!||||||:!!|||||||| heThrLys++ ++IleMetSerThrSerMetSerTy 33812 : TTACTAAGgt.........................agATCATGAGTACATCAATGTCGTA : 34281 395 : rPheThrLeuLeuSerAsnAsn : 401 |||||||||||||!.!.!.!:! rPheThrLeuLeuLysGlnSer 34282 : TTTCACCCTACTAAAACAAAGT : 34304 vulgar: gi|350425900|ref|XP_003494268.1| 173 401 . KQ414828.1 32774 34304 + 494 M 121 363 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32775 34304 494 + . gene_id 4 ; sequence gi|350425900|ref|XP_003494268.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32775 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32775 33137 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 2 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34304 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34304 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32775 34304 494 + . alignment_id 4 ; Query gi|350425900|ref|XP_003494268.1| ; Align 32775 174 363 ; Align 33544 295 276 ; Align 34260 387 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425900|ref|XP_003494268.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 475 Query range: 0 -> 151 Target range: 7890 -> 9139 1 : MetGlnThrGluGlnGluLeuAspIleSerMetArgLeuSerAlaPhePheLeuLysHisIl : 21 ||||||||||||:!!!!:! !|||||||||!!:!.!|||||| !|||||||||::::!!:! MetGlnThrGluLysAspSerAspIleSerIleAsnLeuSerLysPhePheLeuArgAsnVa 7891 : ATGCAAACGGAGAAGGATTCGGACATATCGATCAACTTGTCGAAATTCTTCTTGCGCAATGT : 7951 22 : eGlyLeuTrpIleAlaAsnAspProAlaAspGluArgArgMetLysIleIlePheThrTyrT : 42 !|||||||||! |||.!.:!!! !|||!!:.!.|||!:!! !||| :!: !!.!!|||| lGlyLeuTrpArgAlaGluAsnHisAlaGluAsnArgLysArgLysAlaLeuValAlaTyrT 7952 : CGGCCTGTGGAGGGCTGAGAATCACGCGGAGAATCGTAAAAGGAAAGCGTTGGTCGCCTACA : 8014 43 : hrIleTrpAsnLeuIlePheGlyMetIleValLeuSerArgAspLeuTyrPheThrTrpPhe : 62 |||||||||||:!!.!!!!.!.!!!::!:||| !!!!||||||:!!||||||||||||||| hrIleTrpAsnMetPheLeuAlaIleValValGluThrArgAspMetTyrPheThrTrpPhe 8015 : CGATTTGGAACATGTTTTTGGCCATAGTGGTTGAAACGAGAGATATGTATTTCACCTGGTTC : 8074 63 : TyrAsnGly >>>> Target Intron 1 >>>> AspThrLeuTyrAlaLeuAlaAsn : 73 |||!!.||| 796 bp |||! !||||||!.! !.!!||| TyrLysGly++ ++AspIleLeuTyrValSerThrAsn 8075 : TATAAAGGCgt.........................agGATATTCTTTACGTTAGTACCAAC : 8903 74 : ThrMetSerLeuIleLeuSerSerValLysValCysValIleValMetHisLysLysGluPh : 94 !:!!|||:!!||||||!!!!!!:!!|||:!! !|||:!!:!!!!:|||||| !||||| LeuLeuSerValIleLeuThrThrIleLysLeuThrValValLeuIleHisLysValGluPh 8904 : TTACTGAGCGTGATCTTAACTACGATCAAGCTAACTGTCGTACTAATACACAAAGTGGAATT : 8966 95 : eIleAsnLeuValValTyrMetGluGlnHisPheMetAlaValLysTyrAspIleHisGluL : 115 |!!:!:!|||:!!! !|||||| ! :!!|||||| ! !||| ! ||||||:!!||||||| eMetSerLeuIleAspTyrMetTyrGluHisPheTrpAsnValAspTyrAspLeuHisGluL 8967 : CATGAGTCTGATTGATTACATGTACGAACATTTCTGGAACGTGGATTACGATCTTCACGAGA : 9029 116 : ysGluIleLeuAspAsnCysArgLysIleCysAlaLeuPheIleSerSerValThrThrIle : 135 ||..!|||:!:|||||||||:::||| ||| !:!!|||! !|||||||||||||||||| ysArgIleMetAspAsnCysLysLysThrCysIleIlePheThrSerSerValThrThrIle 9030 : AAAGAATTATggataattgtaaaaaaactTGCATCATCTTCACTTCAAGCGTCACTACCATT : 9089 136 : GlyIleCysAlaIleLeuSerTyrIleThrThrProPheIleAlaGln : 151 |||||||||||||||:!!|||||||||.!!||||||||||||::!:!! GlyIleCysAlaIleIleSerTyrIleAlaThrProPheIleSerGlu 9090 : GGCATATGCGCTATAATATCTTACATAGCGACACCGTTTATCAGTGAG : 9139 vulgar: gi|350425900|ref|XP_003494268.1| 0 151 . KQ414828.1 7890 9139 + 475 M 65 195 5 0 2 I 0 792 3 0 2 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 7891 9139 475 + . gene_id 5 ; sequence gi|350425900|ref|XP_003494268.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 7891 8085 . + . KQ414828.1 exonerate:protein2genome:local exon 7891 8085 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 8086 8087 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 8086 8881 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 8880 8881 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 8882 9139 . + . KQ414828.1 exonerate:protein2genome:local exon 8882 9139 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 7891 9139 475 + . alignment_id 5 ; Query gi|350425900|ref|XP_003494268.1| ; Align 7891 1 195 ; Align 8882 66 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425900|ref|XP_003494268.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 474 Query range: 173 -> 398 Target range: 22695 -> 24175 174 : ProTyrTyrGluLeuIlePhePheAlaGlnIleMetSerLeuSerTyrIleGlyIleCys : 193 ||| ::: ||| ..!.!!||| !:!:|||:!!! ! ! :!!.!! ||| ProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValSerAlaCys 22696 : CCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTAGCGCGTGT : 22753 194 : TyrPheCysPheAspAsnValPheCysValMetAlaIleHisLeuGlyGlyGlnPheArg : 213 |||.!!||||||||| :::||| ::::::...:!!|||:!!!.!|||||||||||| TyrLeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArg 22754 : TACCTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGT : 22813 214 : IleLeuArgTyrArgPheSerGluLeuCysAsnIleLysTyrGlnIleSerGluGlnAsp : 233 ||||||!:!||||||.!!:!!.!.:!!! ..!:!!!.. ! !:!:!.!......!!: IleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSerGlu 22814 : ATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAA : 22873 234 : LysMetSerIleLeuThrLysHisValHisArgThrTyrGluThrPheArgLysTyrVal : 253 !!. |||! ! ! ! !:!! !.!.!:! !||| ! !|||!:!!!.! !:!! AsnProSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIle 22874 : AATCCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATT : 22933 254 : GlnGlnHisGlnAlaLeuIleAsnTyrTyrAsnSerLeuGluAsnValTyrThrValIle : 273 |||||||||||||||||||||.!.!:!! ! !!!||||||.!.|||!:!||||||||| GlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIle 22934 : CAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATC : 22993 274 : IleLeuIleGlnValLeuValPheSerValLeuIleCysLeuPheGlyTyrGlnValLeu : 293 :!!||| !|||||||||:!!! !|||:!!|||||||||!!!.!!||||||||||||||| ValLeuGlyGlnValLeuMetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeu 22994 : GTACTCGGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTC : 23053 294 : Leu >>>> Target Intron 1 >>>> AlaAsnThrAsnSerAlaArgArgSerI : 304 ||| 492 bp !!!. !:::! !! ! !||| ! Leu++ ++IleLysLeuSerPheGluSerArgValA 23054 : CTGgt.........................agATAAAGTTATCATTTGAATCGCGCGTTG : 23578 305 : lePheValPheLeuLeuIleGlyAlaLeuSerLeuLeuPheMetPheThrTyrSerCysA : 324 !|||!.!! !!!!|||!!: !!.!:!!|||! !|||!::||||||||||||||||||| laPheAlaCysPheLeuMetMetGlyMetSerGlnLeuTrpMetPheThrTyrSerCysA 23579 : CTTTCGCGTGCTTCTTGATGATGGGCATGAGTCAACTATGGATGTTCACGTATAGTTGCG : 23638 325 : spAspValIleGluHisSerAspAsnValAlaIleGlyAlaTyrSerAlaLeuTrpThrI : 344 || !:!!! ! !.!.||| |||:!!||| !..!!.!|||:!!!.!! !|||! !! spCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleA 23639 : ATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAA : 23698 345 : leMetProMetAsnLysHisGlyLysMetLeuArgAsnAspLeuIleMetThrIleGluA : 364 !:!:||||||:!!||| !||||||:!!||||||!!.!!:||| !||| !||| !| snLeuProMetAspLysPheGlyLysLeuLeuArgLysGluLeuGlnMetLeuIleLeuA 23699 : ATTTACCAATGGACAAATTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGA : 23758 365 : rgSerArgArgValCysCysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrT : 384 ||:!!|||||| !! !..!||||||||| !||||||||| !!:!!||||||||||||! rgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrP 23759 : GGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCT : 23818 385 : yrThrLys >>>> Target Intron 2 >>>> IleLeuSerThrAlaMetSerTy : 394 :!|||||| 313 bp |||:!!||||||:!!|||||||| heThrLys++ ++IleMetSerThrSerMetSerTy 23819 : TTACTAAGgt.........................agATCATGAGTACATCAATGTCGTA : 24161 395 : rPheThrLeuLeu : 398 ||||||||||||| rPheThrLeuLeu 24162 : TTTCACATTATTA : 24175 vulgar: gi|350425900|ref|XP_003494268.1| 173 398 . KQ414828.1 22695 24175 + 474 M 121 363 5 0 2 I 0 488 3 0 2 M 92 276 5 0 2 I 0 309 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22696 24175 474 + . gene_id 6 ; sequence gi|350425900|ref|XP_003494268.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22696 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22696 23058 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23059 23060 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23059 23550 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 23549 23550 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 23551 23826 . + . KQ414828.1 exonerate:protein2genome:local exon 23551 23826 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23827 23828 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23827 24139 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 24138 24139 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 24140 24175 . + . KQ414828.1 exonerate:protein2genome:local exon 24140 24175 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22696 24175 474 + . alignment_id 6 ; Query gi|350425900|ref|XP_003494268.1| ; Align 22696 174 363 ; Align 23551 295 276 ; Align 24140 387 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425900|ref|XP_003494268.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 246 Query range: 173 -> 296 Target range: 37838 -> 38207 174 : ProTyrTyrGluLeuIlePhePheAlaGlnIleMetSerLeuSerTyrIleGlyIleCys : 193 ||| ::: ||| ..!.!!||| !:!:|||:!!! ! ! :!!.!! ||| ProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValSerAlaCys 37839 : CCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTAGCGCGTGT : 37896 194 : TyrPheCysPheAspAsnValPheCysValMetAlaIleHisLeuGlyGlyGlnPheArg : 213 |||.!!||||||||| :::||| ::::::...:!!|||:!!!.!|||||||||||| TyrLeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArg 37897 : TACCTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGT : 37956 214 : IleLeuArgTyrArgPheSerGluLeuCysAsnIleLysTyrGlnIleSerGluGlnAsp : 233 ||||||!:!||||||.!!:!!.!.:!!! ..!:!!!.. ! !:!:!.!......!!: IleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSerGlu 37957 : ATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAA : 38016 234 : LysMetSerIleLeuThrLysHisValHisArgThrTyrGluThrPheArgLysTyrVal : 253 !!. |||! ! ! ! !:!! !.!.!:! !||| ! !|||!:!!!.! !:!! AsnProSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIle 38017 : AATCCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATT : 38076 254 : GlnGlnHisGlnAlaLeuIleAsnTyrTyrAsnSerLeuGluAsnValTyrThrValIle : 273 |||||||||||||||||||||.!.!:!! ! !!!||||||.!.|||!:!||||||||| GlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIle 38077 : CAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATT : 38136 274 : IleLeuIleGlnValLeuValPheSerValLeuIleCysLeuPheGlyTyrGlnValLeu : 293 !||| !|||||||||:!!||||||:!!|||||||||!!! !!! !||||||!.!||| AlaLeuGlyGlnValLeuMetPheSerIleLeuIleCysPheValValTyrGlnAlaLeu 38137 : GCACTCGGACAAGTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTC : 38196 294 : LeuAlaAsn : 296 |||!.!!:! LeuValSer 38197 : CTGGTGAGT : 38207 vulgar: gi|350425900|ref|XP_003494268.1| 173 296 . KQ414828.1 37838 38207 + 246 M 123 369 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37839 38207 246 + . gene_id 7 ; sequence gi|350425900|ref|XP_003494268.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37839 38207 . + . KQ414828.1 exonerate:protein2genome:local exon 37839 38207 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37839 38207 246 + . alignment_id 7 ; Query gi|350425900|ref|XP_003494268.1| ; Align 37839 174 369 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425900|ref|XP_003494268.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 199 Query range: 305 -> 387 Target range: 38514 -> 38760 306 : ValPheLeuLeuIleGlyAlaLeuSerLeuLeuPheMetPheThrTyrSerCysAspAsp : 325 :!!||| ! !!!: !!.!:!!|||! !|||!::||||||||||||||||||||| ! MetPheAlaThrMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCys 38515 : ATGTTCGCAACGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGC : 38572 326 : ValIleGluHisSerAspAsnValAlaIleGlyAlaTyrSerAlaLeuTrpThrIleMet : 345 :!!! ! !.!.||| |||:!!||| !..!!.!|||:!!!.!! !|||! !! !:!: IleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeu 38573 : ATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTA : 38632 346 : ProMetAsnLysHisGlyLysMetLeuArgAsnAspLeuIleMetThrIleGluArgSer : 365 ||||||:::||| ||||||:::||||||!!.|||||| !:!! !||| !|||:!! ProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAla 38633 : CCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCG : 38692 366 : ArgArgValCysCysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThr : 385 |||||| !! !! !||||||||| !||||||||| !!:!!||||||||||||!:!||| ArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThr 38693 : AGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACT : 38752 386 : LysIle : 387 |||:!! LysVal 38753 : AAGGTA : 38760 vulgar: gi|350425900|ref|XP_003494268.1| 305 387 . KQ414828.1 38514 38760 + 199 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38515 38760 199 + . gene_id 8 ; sequence gi|350425900|ref|XP_003494268.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38515 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38515 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38515 38760 199 + . alignment_id 8 ; Query gi|350425900|ref|XP_003494268.1| ; Align 38515 306 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425900|ref|XP_003494268.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 195 Query range: 311 -> 387 Target range: 28556 -> 28784 312 : AlaLeuSerLeuLeuPheMetPheThrTyrSerCysAspAspValIleGluHisSerAsp : 331 !.!:!!|||! !|||!::||||||||||||||||||||| !:!!! ! !.!.||| GlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeu 28557 : GGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTG : 28614 332 : AsnValAlaIleGlyAlaTyrSerAlaLeuTrpThrIleMetProMetAsnLysHisGly : 351 |||:!!||| !..!!.!|||:!!!.!! !|||! !! !:!:||||||:::||| ||| AsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGly 28615 : AACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttgga : 28674 352 : LysMetLeuArgAsnAspLeuIleMetThrIleGluArgSerArgArgValCysCysLeu : 371 |||:::||||||!!.|||||| !:!! !||| !|||:!!|||||| !! !! !||| LysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeu 28675 : aaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTG : 28734 372 : ThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrLysIle : 387 |||||| !||||||||| !!:!!||||||||||||!:!||||||:!! ThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 28735 : ACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 28784 vulgar: gi|350425900|ref|XP_003494268.1| 311 387 . KQ414828.1 28556 28784 + 195 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28557 28784 195 + . gene_id 9 ; sequence gi|350425900|ref|XP_003494268.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28557 28784 . + . KQ414828.1 exonerate:protein2genome:local exon 28557 28784 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28557 28784 195 + . alignment_id 9 ; Query gi|350425900|ref|XP_003494268.1| ; Align 28557 312 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425900|ref|XP_003494268.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 50 -> 151 Target range: 26879 -> 27182 51 : IleValLeuSerArgAspLeuTyrPheThrTrpPheTyrAsnGlyAspThrLeuTyrAla : 70 !!: |||...... |||||| :::...::: !! ! !:!!||| ! MetPheLeuLysAsnLysLeuTyrVal***PheLeuPheLeuGlnValCysMetTyrMet 26880 : ATGttcttaaaaaacaaattatacgtctaatttctatttctacaGGTTTGCATGTACATG : 26937 71 : LeuAlaAsnThrMetSerLeuIleLeuSerSerValLysValCysValIleValMetHis : 90 !!.!||| !:!::!!:!!:!!|||..!! !:!!|||:!!! !..!:!!|||:!:||| AlaGlyAsnGlyLeuAlaMetValLeuAspIleIleLysIlePheThrLeuValValHis 26938 : GCTGGCAACGGTTTAGCCATGGTTTTGGATATAATCAAGATTTTCACCCTAGTCGTACAC : 26997 91 : LysLysGluPheIleAsnLeuValValTyrMetGluGlnHisPheMetAlaValLysTyr : 110 ||||||:!!|||:!!..!|||:!!! !||||||:!!:!!:!!||| ! !:!!!!.||| LysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheTrpHisLeuAsnTyr 26998 : AAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTTTGGCATTTGAACTAC : 27057 111 : AspIleHisGluLysGluIleLeuAspAsnCysArgLysIleCysAlaLeuPheIleSer : 130 ||| :!!|||!!....:!!|||! .!....!:!::!!!:||| !! !|||:!:!! AspGlnTyrGluAsnSerValLeuAlaGlnAlaLysArgMetCysIleTyrPheValCys 27058 : GATCAGTACGAGAATTCTGTTTTGGCACAGGCGAAACGAATGTGCATTTACTTCGTGTGc : 27117 131 : SerValThrThrIleGlyIleCysAlaIleLeuSerTyrIleThrThrProPheIleAla : 150 :::::: ...... :!!:!!||||||||||||! !! !|||.!!:!!..! ValLeuSerPhePheSerGlnSerSerValLeuSerTyrIleIleArgProLeuValCys 27118 : gttttgtcatttttttctcaatctTCAGTTCTTTCCTATATCATAAGGCCACTTGTATGT : 27177 151 : Gln : 151 :!! Lys 27178 : AAG : 27182 vulgar: gi|350425900|ref|XP_003494268.1| 50 151 . KQ414828.1 26879 27182 + 161 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26880 27182 161 + . gene_id 10 ; sequence gi|350425900|ref|XP_003494268.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 26880 27182 . + . KQ414828.1 exonerate:protein2genome:local exon 26880 27182 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 26880 27182 161 + . alignment_id 10 ; Query gi|350425900|ref|XP_003494268.1| ; Align 26880 51 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425900|ref|XP_003494268.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 50 -> 151 Target range: 36990 -> 37293 51 : IleValLeuSerArgAspLeuTyrPheThrTrpPheTyrAsnGlyAspThrLeuTyrAla : 70 !!: |||...... |||||| :::...::: !! ! !:!!||| ! MetPheLeuLysAsnLysLeuTyrVal***PheLeuPheLeuGlnValCysMetTyrMet 36991 : ATGttcttaaaaaacaaattatacgtctaatttctatttctacaGGTTTGCATGTACATG : 37048 71 : LeuAlaAsnThrMetSerLeuIleLeuSerSerValLysValCysValIleValMetHis : 90 !!.!||| !:!::!!:!!:!!|||..!! !:!!|||:!!! ! !:!!|||:!:||| AlaGlyAsnGlyLeuAlaMetValLeuAspIleIleLysIlePheSerLeuValValHis 37049 : GCAGGCAACGGTTTAGCCATGGTTTTGGATATAATCAAGATTTTCTCCCTAGTCGTACAC : 37108 91 : LysLysGluPheIleAsnLeuValValTyrMetGluGlnHisPheMetAlaValLysTyr : 110 ||||||:!!|||:!!..!|||:!!! !||||||:!!:!!:!!|||:!! !:!!!!.||| LysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheLeuHisLeuAsnTyr 37109 : AAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTCTTGCATTTGAACTAC : 37168 111 : AspIleHisGluLysGluIleLeuAspAsnCysArgLysIleCysAlaLeuPheIleSer : 130 ||| :!!|||!!....:!!:!!! .!....!:!::!!!:||| !! !|||:!:!! AspGlnTyrGluAsnSerValIleAlaGlnAlaLysArgMetCysIleTyrPheValCys 37169 : GATCAGTACGAGAATTCTGTTATCGCACAGGCGAAACGAATGTGCATTTACTTCGTGTGc : 37228 131 : SerValThrThrIleGlyIleCysAlaIleLeuSerTyrIleThrThrProPheIleAla : 150 :::::: ...... :!!:!!||||||||||||..!! !|||.!!:!!..! ValLeuSerPhePheSerGlnSerSerValLeuSerTyrIleValArgProLeuValCys 37229 : gttttgtcatttttttctcaatctTCAGTTCTTTCCTATATAGTAAGGCCACTTGTATGT : 37288 151 : Gln : 151 :!! Lys 37289 : AAG : 37293 vulgar: gi|350425900|ref|XP_003494268.1| 50 151 . KQ414828.1 36990 37293 + 161 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 36991 37293 161 + . gene_id 11 ; sequence gi|350425900|ref|XP_003494268.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 36991 37293 . + . KQ414828.1 exonerate:protein2genome:local exon 36991 37293 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 36991 37293 161 + . alignment_id 11 ; Query gi|350425900|ref|XP_003494268.1| ; Align 36991 51 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425900|ref|XP_003494268.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 7 -> 61 Target range: 15121 -> 15283 8 : AspIleSerMetArgLeuSerAlaPhePheLeuLysHisIleGlyLeuTrpIleAlaAsn : 27 |||||||||!!:!!!|||!!!:!! !!|||:!!||| !:!!|||||||||!!:|||::: AspIleSerIleSerLeuThrSerValPheMetLysIleValGlyLeuTrpMetAlaSer 15122 : GACATATCAATCAGCCTGACGTCCGTTTTCATGAAGATCGTTGGACTGTGGATGGCGTCG : 15179 28 : AspProAlaAspGluArgArgMetLysIleIlePheThrTyrThrIleTrpAsnLeuIle : 47 :!!! ! !!!::!!||| ! !!.|||! .!. !||||||:!: :!!:!! AsnArgPheGluGlnArgValArgAsnIleThrLeuCysTyrThrLeuIleAlaIleLeu 15180 : AACCGTTTCGAGCAACGAGTACGAAATATCACGCTGTGTTACACGCTGATCGCGATTCTC : 15239 48 : PheGlyMetIleValLeuSerArgAspLeuTyrPheThrTrp : 61 |||!.!:!! :!!! !! !! !|||||||||!:!:!!||| PheAlaLeuTrpIleGlnMetThrAspLeuTyrTyrSerTrp 15240 : TTCGCCCTGTGGATACAAATGACGGATTTGTATTACTCGTGG : 15283 vulgar: gi|350425900|ref|XP_003494268.1| 7 61 . KQ414828.1 15121 15283 + 112 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15122 15283 112 + . gene_id 12 ; sequence gi|350425900|ref|XP_003494268.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 15122 15283 . + . KQ414828.1 exonerate:protein2genome:local exon 15122 15283 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15122 15283 112 + . alignment_id 12 ; Query gi|350425900|ref|XP_003494268.1| ; Align 15122 8 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927561|ref|XP_012248310.1| PREDICTED: odorant receptor 4-like isoform X2 [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1257 Query range: 0 -> 405 Target range: 7890 -> 13158 1 : MetGlnThrGluLeuAspLeuAspMetSerMetValLeuSerLysPhePheLeuArgSer : 20 |||||||||||| !|||! !|||!!:|||!!: !|||||||||||||||||||||!:! MetGlnThrGluLysAspSerAspIleSerIleAsnLeuSerLysPhePheLeuArgAsn 7891 : ATGCAAACGGAGAAGGATTCGGACATATCGATCAACTTGTCGAAATTCTTCTTGCGCAAT : 7948 21 : IleGlyLeuTrpIleSerGluAsnSerAlaGluGluArgArgMetLysIleMetIleIle : 40 :!!|||||||||! :!!|||||| !||||||.!.|||!:!! !||| :!!:!! ! ValGlyLeuTrpArgAlaGluAsnHisAlaGluAsnArgLysArgLysAlaLeuValAla 7949 : GTCGGCCTGTGGAGGGCTGAGAATCACGCGGAGAATCGTAAAAGGAAAGCGTTGGTCGCC : 8008 41 : TyrThrValTrpHisSerIlePheAlaThrValGluIleThrArgAspPheTyrPheThr : 60 ||||||:!!|||:!!! !.!!!!.|||! !|||! !|||||||||.!.||||||||| TyrThrIleTrpAsnMetPheLeuAlaIleValValGluThrArgAspMetTyrPheThr 8009 : TACACGATTTGGAACATGTTTTTGGCCATAGTGGTTGAAACGAGAGATATGTATTTCACC : 8068 61 : IlePheTyrLysGly >>>> Target Intron 1 >>>> AspIleLeuTyrValT : 71 |||||||||||| 796 bp |||||||||||||||! TrpPheTyrLysGly++ ++AspIleLeuTyrValS 8069 : TGGTTCTATAAAGGCgt.........................agGATATTCTTTACGTTA : 8897 72 : hrThrAsnIleLeuThrValThrMetGlyLeuIleLysIleCysIleIleMetAlaHisL : 91 :!||||||:!!|||!:!|||! !:!: ! !||||||:!! !:!!:!!:!: !|||| erThrAsnLeuLeuSerValIleLeuThrThrIleLysLeuThrValValLeuIleHisL 8898 : GTACCAACTTACTGAGCGTGATCTTAACTACGATCAAGCTAACTGTCGTACTAATACACA : 8957 92 : ysGluGluPheIleAsnLeuIleValTyrValArgGlnHisPheTrpAsnValLysTyrA : 111 ||! !||||||!!:!:!||||||! !|||:!! !:!!||||||||||||||| ! |||: ysValGluPheMetSerLeuIleAspTyrMetTyrGluHisPheTrpAsnValAspTyrA 8958 : AAGTGGAATTCATGAGTCTGATTGATTACATGTACGAACATTTCTGGAACGTGGATTACG : 9017 112 : snPheArgGluLysGluIleLeuAspAspCysArgLysThrCysThrPhePheValCysS : 131 !!.!!!.!||||||..!|||:!:|||:::|||:::|||||||||! !.!!|||..!! | spLeuHisGluLysArgIleMetAspAsnCysLysLysThrCysIleIlePheThrSerS 9018 : ATCTTCACGAGAAAAGAATTATggataattgtaaaaaaactTGCATCATCTTCACTTCAA : 9077 132 : erValThrIleMetGlyAlaCysAlaIleIleAlaTyrLeuIleThrProValIle{A} : 150 ||||||||! !!!:||| !||||||||||||:!!|||:!! |||||| !!|||{ } erValThrThrIleGlyIleCysAlaIleIleSerTyrIleAlaThrProPheIle{M}+ 9078 : GCGTCACTACCATTGGCATATGCGCTATAATATCTTACATAGCGACACCGTTTATC{A}g : 9135 151 : >>>> Target Intron 2 >>>> {la}AsnAlaGlyLysAsnAsnSerGluArgV : 160 192 bp { !}:!!::! !!..|||!!.|||||||||! + ++{et}HisSerGlnSerAsnLysSerGluArgA 9136 : t.........................ag{TG}CACAGTCAAAGCAACAAATCTGAAAGAG : 9356 161 : alLeuProPheAsnIleTrpLeuAsnLeuProValSerMetSerProTyrTyrGluMetI : 180 .!!!!! !|||:!!!!:|||||||||||||||:!!!!!:!:||||||||||||||| ! laPheLeuPheAspMetTrpLeuAsnLeuProLeuThrValSerProTyrTyrGluGlyM 9357 : CGTTTCTGTTCGACATGTGGCTCAATTTACCTCTGACTGTTTCGCCTTACTACGAAGGAA : 9416 181 : lePheThrLeuGln >>>> Target Intron 3 >>>> MetIleAsnMetTyrGl : 190 !:!!..!!:!!||| 1401 bp !!: !...:!!||| etLeuAlaValGln++ ++IleSerGlyLeuTyrPh 9417 : TGTTGGCTGTACAGgt.........................agATTTCAGGACTGTATTT : 10847 191 : nIleAlaValThrTyrPheCysPheAspAsnIlePheCysIleLeuAlaIleHisLeuAl : 210 ! !!.!:!! !||||||||||||||||||||||||||||||:!!::!:!:||||||:: eThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerValHisLeuSe 10848 : CACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTGCATTTGAG : 10907 211 : aGlyGlnPheArgIleLeuArgTyrArgPheSerLysLeuCysAspIleGluHisGlnIl : 230 !||||||||||||||||||!:!||||||!!.!!!||||||! !|||:!!:!!:!!||||| rGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGlnTyrGlnIl 10908 : TGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAATATCAGAT : 10967 231 : eAsnGluLysAspMetGluLeuThrIleThrAsnTyrAlaHisThrPheTyrLysLysLe : 250 |!::||||||:::|||||| !..!:!: !:!!! !.!!!.!! !! !|||:!!|||!! eSerGluLysAsnMetGluSerValLeuGluAspCysThrArgArgSerTyrGluLysPh 10968 : AAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGTAGATCTTACGAGAAATT : 11027 251 : uLysMetTyrValArgHisHisGlnGluLeuIleAsnPheCysAspArgLeuGluAsnVa : 270 !|||! |||||||||!!.|||||| !||||||:!!!:!! !!!:!:!||||||:!!|| eLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLysLeuGluHisVa 11028 : TAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAGCTTGAACACGT : 11087 271 : lTyrThrMetLeuIleLeuGlyGlnValLeuValPheSerValLeuIleCysLeuPheAl : 290 |||||||! :!!||||||||||||||||||:!!||||||||||||||||||||||||!. lTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIleCysLeuPheGl 11088 : TTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATTTGCCTCTTTGG : 11147 291 : aTyrGlnGlyLeuLeu >>>> Target Intron 4 >>>> AlaAlaAlaProLeu : 300 !|||||| !|||||| 1305 bp ||| !.!! !!||| yTyrGlnIleLeuLeu++ ++AlaAsnThrSerLeu 11148 : TTATCAGATATTATTGgt.........................agGCTAATACTTCTCTT : 12482 301 : AlaArgArgSerIlePheIlePheHisLeuIleGlySerMetAlaLeuLeuPheMetPhe : 320 ||||||||||||||||||!!:|||! !:!! !|||:!!|||!.!||||||||||||||| AlaArgArgSerIlePheMetPheLeuIleCysGlyAlaMetValLeuLeuPheMetPhe 12483 : GCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTTTTATTGTTTATGTTC : 12542 321 : ThrTyrSerCysAspGlyValIleGluHisSerGluLysValAlaIleGlyAlaTyrSer : 340 ||||||||||||:!! !|||||||||!!.|||!!:!!.:!!|||.!!!.!||||||||| ThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAlaPheAlaAlaTyrSer 12543 : ACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCTTTTGCGGCGTATTCG : 12602 341 : AlaLeuTrpThrIleMetProMetAsnLysProGlyLysMetLeuArgAsnAspLeuIle : 360 |||||||||||| !||||||||||||||| !!||||||! !||||||:!!||||||||| AlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeuArgHisAspLeuIle 12603 : GCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTACGGCATGATTTGATA : 12662 361 : MetValIleGluArgSerArgArgValCysCysLeuThrAlaAsnArgPhePheProVal : 380 |||||||||! !||||||||||||||||||||||||||||||||| !!|||||||||||| MetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePheProVal 12663 : ATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATGGATTTTTCCCTGTG : 12722 381 : SerLeuGluThrTyrAsnLys >>>> Target Intron 5 >>>> IleLeuSerT : 391 |||||||||||||||!.!! ! 359 bp |||||||||| SerLeuGluThrTyrThrThr++ ++IleLeuSerT 12723 : TCCTTAGAAACTTATACTACGgt.........................agattttgAGTA : 13114 392 : hrAlaAlaSerTyrPheThrLeuLeuArgAsnHisLeuGluAsn : 405 ||||||||||||||||||||||||||||||||:!!:!!|||:!! hrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnValGluAsp 13115 : CCGCGGCGTCGTACTTCACATTATTGAGAAATAACGTAGAAGAT : 13158 vulgar: gi|815927561|ref|XP_012248310.1| 0 405 . KQ414828.1 7890 13158 + 1257 M 65 195 5 0 2 I 0 792 3 0 2 M 84 252 S 0 1 5 0 2 I 0 188 3 0 2 S 1 2 M 34 102 5 0 2 I 0 1397 3 0 2 M 111 333 5 0 2 I 0 1301 3 0 2 M 92 276 5 0 2 I 0 355 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 7891 13158 1257 + . gene_id 1 ; sequence gi|815927561|ref|XP_012248310.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 7891 8085 . + . KQ414828.1 exonerate:protein2genome:local exon 7891 8085 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 8086 8087 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 8086 8881 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 8880 8881 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 8882 9134 . + . KQ414828.1 exonerate:protein2genome:local exon 8882 9134 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 9135 9136 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 9135 9326 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 9325 9326 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 9327 9430 . + . KQ414828.1 exonerate:protein2genome:local exon 9327 9430 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 9431 9432 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 9431 10831 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 10830 10831 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 10832 11164 . + . KQ414828.1 exonerate:protein2genome:local exon 10832 11164 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 11165 11166 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 11165 12469 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 12468 12469 . + . intron_id 3 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 12470 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12745 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13104 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 13103 13104 . + . intron_id 4 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 13105 13158 . + . KQ414828.1 exonerate:protein2genome:local exon 13105 13158 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 7891 13158 1257 + . alignment_id 1 ; Query gi|815927561|ref|XP_012248310.1| ; Align 7891 1 195 ; Align 8882 66 252 ; Align 9329 151 102 ; Align 10832 185 333 ; Align 12470 296 276 ; Align 13105 388 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927561|ref|XP_012248310.1| PREDICTED: odorant receptor 4-like isoform X2 [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 478 Query range: 171 -> 405 Target range: 32765 -> 34313 172 : SerMetSerProTyrTyrGluMetIlePheThrLeuGlnMetIleAsnMetTyrGlnIle : 191 ..!|||! !||| ::: ||| ! !||| :!!::!:!!||||||:!! GlnMetIleProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnVal 32766 : CAAATGATTCCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTT : 32823 192 : AlaValThrTyrPheCysPheAspAsnIlePheCysIleLeuAlaIleHisLeuAlaGly : 211 !.!||| !|||.!!|||||||||||||||||| |||:::..!:!!|||:!!|||||| GlyValCysTyrLeuCysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGly 32824 : GGAGTGTGTTACCTTTGCTttgataacatttttttcattatgtgTCTACACGTGGCTGGT : 32883 212 : GlnPheArgIleLeuArgTyrArgPheSerLysLeuCysAspIleGluHisGlnIleAsn : 231 |||||||||||||||!:!||||||.!!:!!!!.:!!! ! !:!!....!. !:!:!!. GlnPheArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLys 32884 : CAGTTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAG : 32943 232 : GluLysAspMetGluLeuThrIleThrAsnTyrAlaHisThrPheTyrLysLysLeuLys : 251 ...!!.|||! ! !||| ! ! |||:!!.!.! !! !|||! |||!!!||| SerAsnAspAsnThrSerThrAlaGluLeuTyrSerGluLysCysTyrIleLysPheLys 32944 : AGCAATGATAATACAAGCACGGCTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAG : 33003 252 : MetTyrValArgHisHisGlnGluLeuIleAsnPheCysAspArgLeuGluAsnValTyr : 271 ! ! !:!!!:!!!.||||||! !||||||...||||||::: ||||||.!.|||!:! AsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysGluIleLeuGluGluValPhe 33004 : AATTGCATTCAACAACATCAGGCACTaattgaattttgtgaaatactCGAAGAGGTATTC : 33063 272 : ThrMetLeuIleLeuGlyGlnValLeuValPheSerValLeuIleCysLeuPheAlaTyr : 291 |||:!::!!:!!|||||||||||||||:!!||||||:!!:!!||||||!!! !!.!||| ThrValIleValLeuGlyGlnValLeuMetPheSerIleIleIleCysPheAlaGlyTyr 33064 : ACGGTAATCGTACTCGGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTAT : 33123 292 : GlnGlyLeuLeu >>>> Target Intron 1 >>>> AlaAlaAlaProLeuAlaA : 302 :!!! !|||||| 406 bp !.!! !|||!!!! ! GluValLeuLeu++ ++IleThrLeuProPheGluS 33124 : GAAGTACTCCTGgt.........................agATAACGTTACCATTTGAAT : 33562 303 : rgArgSerIlePheIlePheHisLeuIleGlySerMetAlaLeuLeuPheMetPheThrT : 322 !||| ! !|||! ! ! !|||||| !.!!:!!::!! !|||!::|||||||||| erArgValAlaPheThrCysPheLeuIleThrGlyValSerGlnLeuTrpMetPheThrT 33563 : CGCGCGTTGCTTTCACGTGCTTCTTGATTACGGGCGTGAGTCAACTATGGATGTTCACGT : 33622 323 : yrSerCysAspGlyValIleGluHisSerGluLysValAlaIleGlyAlaTyrSerAlaL : 342 ||||||||:!! !!:!!! ! !.!.||| !!!.:!!||| !..!!.!|||:!!!.!! yrSerCysAsnCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyP 33623 : ACAGTTGCAATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGAC : 33682 343 : euTrpThrIleMetProMetAsnLysProGlyLysMetLeuArgAsnAspLeuIleMetV : 362 !|||! !! !:!:||||||:::||| ||||||:::||||||!!.|||||| !:!!: roTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValL 33683 : CATGGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAGGATTTACAAGTGC : 33742 363 : alIleGluArgSerArgArgValCysCysLeuThrAlaAsnArgPhePheProValSerL : 382 !!||| !|||:!!|||||| !! !..!||||||||| ! !!|||||| !!:!!!!!| euIleLeuArgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleThrL 33743 : TCATCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATAACTC : 33802 383 : euGluThrTyrAsnLys >>>> Target Intron 2 >>>> IleLeuSerThrAl : 392 ||||||||!:!!.!||| 440 bp |||:!!||||||:! euGluThrPheThrLys++ ++IleMetSerThrSe 33803 : TCGAAACCTTTACTAAGgt.........................agATCATGAGTACATC : 34272 393 : aAlaSerTyrPheThrLeuLeuArgAsnHisLeuGluAsn : 405 ! !||||||||||||||||||!:!.!. ! !|||:!! rMetSerTyrPheThrLeuLeuLysGlnSerAlaGluAsp 34273 : AATGTCGTATTTCACCCTACTAAAACAAAGTGCCGAGGAC : 34313 vulgar: gi|815927561|ref|XP_012248310.1| 171 405 . KQ414828.1 32765 34313 + 478 M 124 372 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32766 34313 478 + . gene_id 2 ; sequence gi|815927561|ref|XP_012248310.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32766 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32766 33137 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 2 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34313 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34313 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32766 34313 478 + . alignment_id 2 ; Query gi|815927561|ref|XP_012248310.1| ; Align 32766 172 372 ; Align 33544 296 276 ; Align 34260 388 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927561|ref|XP_012248310.1| PREDICTED: odorant receptor 4-like isoform X2 [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 471 Query range: 179 -> 401 Target range: 3375 -> 5250 180 : IlePheThrLeuGlnMetIleAsnMetTyrGlnIleAlaValThrTyrPheCysPheAspAs : 200 :!!|||:!!||||||!!:.!!! !!!: ! :!!..!:!!!:!|||.!!|||.!!||||| LeuPheSerLeuGlnIlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAs 3376 : CTTTTTTCGCTACAGATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAA : 3436 201 : nIlePheCysIleLeuAlaIleHisLeuAlaGlyGlnPheArgIleLeuArgTyrArgPheS : 221 |.!!.!.|||!!::!! !:!!||| !||| !|||||||||||||||!:!||||||.!.| nPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 3437 : TTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGT : 3499 222 : erLysLeuCysAspIleGluHisGlnIleAsnGluLysAspMetGluLeuThrIleThrAsn : 241 ||!!.:!!|||! ! !.!..!.!:: !:::::||| ::: ||| :!!||| erAsnValCysGlyAlaAsnGluArg---SerAspLysIleSerLysLysThrProSerAsn 3500 : CGAATGTGTGCGGTGCAAACGAACGT---AgcgataaaatttcgaaaaaaacaCCGTCCAAT : 3556 242 : TyrAlaHisThrPheTyrLysLysLeuLysMetTyrValArgHisHisGlnGluLeuIleAs : 262 :!! !! !! !||| |||!!!|||! ! !:!!!:!!!.||||||! !||||||.! ---SerAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGl 3557 : ---TCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGA : 3616 263 : nPheCysAspArgLeuGluAsnValTyrThrMetLeuIleLeuGlyGlnValLeuValPheS : 283 .!:!|||:!!!:!|||:!!.!.|||!:! !!!:!!!:!:|||!.!|||||||||:!!|||| uTyrCysAsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheS 3617 : ATACTGTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCA : 3679 284 : erValLeuIleCysLeuPheAlaTyrGlnGlyLeuLeu >>>> Target Intron 1 > : 296 ||:!!|||!!:|||||| !!.!||| ! :!!:!! 457 bp erLeuLeuMetCysLeuAspGlyTyrLeu---ValMet++ 3680 : GTTTGTTAATGTGCCTCGATGGATATTTG---GTGATGgt...................... : 3717 297 : >>> AlaAlaAlaProLeuAlaArgArgSerIlePheIlePheHisLeuIleGlySerMet : 314 ! !! !.!!|||:!! !!:!||| !! !|||:!:|||||||||! |||!!!:!! ++GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeu 3718 : ...agGAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTG : 4226 315 : AlaLeuLeuPheMetPheThrTyrSerCysAspGlyValIleGluHisSerGluLysValAl : 335 ..!! !|||!!.||||||||||||||||||||| !!:!!|||..!.!.||| !!!.||||| CysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAl 4227 : TGCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGC : 4289 336 : aIleGlyAlaTyrSerAlaLeuTrpThrIleMetProMetAsnLysProGlyLysMetLeuA : 356 |! !!.! !|||..!..!! !|||! ! !:!!||||||:!!!:! !!|||::!||||||| aAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuA 4290 : CAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGC : 4352 357 : rgAsnAspLeuIleMetValIleGluArgSerArgArgValCysCysLeuThrAlaAsnArg : 376 ||!!.||||||! !.!.||||||! !||||||||| ! !||||||||||||||| ! !! rgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGly 4353 : GAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGA : 4412 377 : PhePheProValSerLeuGluThrTyrAsnLys >>>> Target Intron 2 >>>> : 388 |||||||||||||||||||||||||||!.!..! 761 bp PhePheProValSerLeuGluThrTyrThrSer++ ++ 4413 : TTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt.........................ag : 5207 389 : IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsn : 401 |||||||||||||||||||||||||||||||||||||||||| IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsn 5208 : ATTTTAAGTACCGCAGCGTCATACTTCACACTGCTACGAAAC : 5250 vulgar: gi|815927561|ref|XP_012248310.1| 179 401 . KQ414828.1 3375 5250 + 471 M 50 150 G 1 0 M 11 33 G 1 0 M 50 150 G 1 0 M 2 6 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 757 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 3376 5250 471 + . gene_id 3 ; sequence gi|815927561|ref|XP_012248310.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 3376 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3376 3714 . + . insertions 0 ; deletions 3 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 5208 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 5207 5208 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 5209 5250 . + . KQ414828.1 exonerate:protein2genome:local exon 5209 5250 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 3376 5250 471 + . alignment_id 3 ; Query gi|815927561|ref|XP_012248310.1| ; Align 3376 180 150 ; Align 3526 231 33 ; Align 3559 243 150 ; Align 3709 294 6 ; Align 4172 296 276 ; Align 5209 388 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927561|ref|XP_012248310.1| PREDICTED: odorant receptor 4-like isoform X2 [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 462 Query range: 171 -> 405 Target range: 22686 -> 24193 172 : SerMetSerProTyrTyrGluMetIlePheThrLeuGlnMetIleAsnMetTyrGlnIle : 191 ..!|||! !||| ::: ||| ! !||| :!!::!:!!||||||:!! GlnMetIleProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnVal 22687 : CAAATGATTCCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTT : 22744 192 : AlaValThrTyrPheCysPheAspAsnIlePheCysIleLeuAlaIleHisLeuAlaGly : 211 ::!!.! !|||.!!||||||||| |||||| ||||||...:!!|||:!!|||||| SerAlaCysTyrLeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGly 22745 : AGCGCGTGTTACCTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGT : 22804 212 : GlnPheArgIleLeuArgTyrArgPheSerLysLeuCysAspIleGluHisGlnIleAsn : 231 |||||||||||||||!:!||||||.!!:!!!!.:!!! ! !:!!....!. !:!:!!. GlnPheArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLys 22805 : CAGTTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAA : 22864 232 : GluLysAspMetGluLeuThrIleThrAsnTyrAlaHisThrPheTyrLysLysLeuLys : 251 ...!..!!:! ! !||| ! ! |||:!!.!.! !! !|||! |||!!!||| SerSerGluAsnProSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLys 22865 : AGCAGTGAAAATCCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAG : 22924 252 : MetTyrValArgHisHisGlnGluLeuIleAsnPheCysAspArgLeuGluAsnValTyr : 271 ! ! !:!!!:!!!.||||||! !||||||.!.||||||! ! !||||||.!.|||!:! AsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPhe 22925 : AATTGCATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTC : 22984 272 : ThrMetLeuIleLeuGlyGlnValLeuValPheSerValLeuIleCysLeuPheAlaTyr : 291 |||:!::!!:!!|||||||||||||||:!!! !|||:!!|||||||||!!!.!!!.!||| ThrValIleValLeuGlyGlnValLeuMetSerSerIleLeuIleCysPheIleGlyTyr 22985 : ACGGTAATCGTACTCGGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTAT : 23044 292 : GlnGlyLeuLeu >>>> Target Intron 1 >>>> AlaAlaAlaProLeuAlaA : 302 |||! !|||||| 492 bp ! ! ! !!!!!! ! GlnValLeuLeu++ ++IleLysLeuSerPheGluS 23045 : CAAGTACTCCTGgt.........................agATAAAGTTATCATTTGAAT : 23569 303 : rgArgSerIlePheIlePheHisLeuIleGlySerMetAlaLeuLeuPheMetPheThrT : 322 !||| ! !||| ! ! !|||!!: !.!!|||::!! !|||!::|||||||||| erArgValAlaPheAlaCysPheLeuMetMetGlyMetSerGlnLeuTrpMetPheThrT 23570 : CGCGCGTTGCTTTCGCGTGCTTCTTGATGATGGGCATGAGTCAACTATGGATGTTCACGT : 23629 323 : yrSerCysAspGlyValIleGluHisSerGluLysValAlaIleGlyAlaTyrSerAlaL : 342 ||||||||||| !!:!!! ! !.!.||| !!!.:!!||| !..!!.!|||:!!!.!! yrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyP 23630 : ATAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGAC : 23689 343 : euTrpThrIleMetProMetAsnLysProGlyLysMetLeuArgAsnAspLeuIleMetV : 362 !|||! !! !:!:||||||:!!||| !||||||:!!||||||!!.!!:||| !|||: roTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysGluLeuGlnMetL 23690 : CATGGATAAATTTACCAATGGACAAATTTGGAAAACTGCTAAGAAAAGAATTGCAAATGC : 23749 363 : alIleGluArgSerArgArgValCysCysLeuThrAlaAsnArgPhePheProValSerL : 382 !!||| !|||:!!|||||| !! !..!||||||||| ! !!|||||| !!:!!|||| euIleLeuArgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleSerL 23750 : TCATCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATATCTC : 23809 383 : euGluThrTyrAsnLys >>>> Target Intron 2 >>>> IleLeuSerThrAl : 392 ||||||||!:!!.!||| 313 bp |||:!!||||||:! euGluThrPheThrLys++ ++IleMetSerThrSe 23810 : TCGAAACCTTTACTAAGgt.........................agATCATGAGTACATC : 24152 393 : aAlaSerTyrPheThrLeuLeuArgAsnHisLeuGluAsn : 405 ! !||||||||||||||||||!:!.!. !:!!|||:!! rMetSerTyrPheThrLeuLeuLysGlnCysIleGluAsp 24153 : AATGTCGTATTTCACATTATTAAAACAATGTATCGAGGAC : 24193 vulgar: gi|815927561|ref|XP_012248310.1| 171 405 . KQ414828.1 22686 24193 + 462 M 124 372 5 0 2 I 0 488 3 0 2 M 92 276 5 0 2 I 0 309 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22687 24193 462 + . gene_id 4 ; sequence gi|815927561|ref|XP_012248310.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22687 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22687 23058 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23059 23060 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23059 23550 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 23549 23550 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 23551 23826 . + . KQ414828.1 exonerate:protein2genome:local exon 23551 23826 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23827 23828 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23827 24139 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 24138 24139 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 24140 24193 . + . KQ414828.1 exonerate:protein2genome:local exon 24140 24193 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22687 24193 462 + . alignment_id 4 ; Query gi|815927561|ref|XP_012248310.1| ; Align 22687 172 372 ; Align 23551 296 276 ; Align 24140 388 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927561|ref|XP_012248310.1| PREDICTED: odorant receptor 4-like isoform X2 [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 271 Query range: 171 -> 297 Target range: 37829 -> 38207 172 : SerMetSerProTyrTyrGluMetIlePheThrLeuGlnMetIleAsnMetTyrGlnIle : 191 ..!|||! !||| ::: ||| ! !||| :!!::!:!!||||||:!! GlnMetIleProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnVal 37830 : CAAATGATTCCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTT : 37887 192 : AlaValThrTyrPheCysPheAspAsnIlePheCysIleLeuAlaIleHisLeuAlaGly : 211 ::!!.! !|||.!!||||||||| |||||| ||||||...:!!|||:!!|||||| SerAlaCysTyrLeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGly 37888 : AGCGCGTGTTACCTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGT : 37947 212 : GlnPheArgIleLeuArgTyrArgPheSerLysLeuCysAspIleGluHisGlnIleAsn : 231 |||||||||||||||!:!||||||.!!:!!!!.:!!! ! !:!!....!. !:!:!!. GlnPheArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLys 37948 : CAGTTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAA : 38007 232 : GluLysAspMetGluLeuThrIleThrAsnTyrAlaHisThrPheTyrLysLysLeuLys : 251 ...!..!!:! ! !||| ! ! |||:!!.!.! !! !|||! |||!!!||| SerSerGluAsnProSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLys 38008 : AGCAGTGAAAATCCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAG : 38067 252 : MetTyrValArgHisHisGlnGluLeuIleAsnPheCysAspArgLeuGluAsnValTyr : 271 ! ! !:!!!:!!!.||||||! !||||||.!.||||||! ! !||||||.!.|||!:! AsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPhe 38068 : AATTGCATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTC : 38127 272 : ThrMetLeuIleLeuGlyGlnValLeuValPheSerValLeuIleCysLeuPheAlaTyr : 291 |||:!::!! !|||||||||||||||:!!||||||:!!|||||||||!!! !!!.!||| ThrValIleAlaLeuGlyGlnValLeuMetPheSerIleLeuIleCysPheValValTyr 38128 : ACGGTAATTGCACTCGGACAAGTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTAT : 38187 292 : GlnGlyLeuLeuAlaAla : 297 |||!.!||||||!.!::! GlnAlaLeuLeuValSer 38188 : CAAGCACTCCTGGTGAGT : 38207 vulgar: gi|815927561|ref|XP_012248310.1| 171 297 . KQ414828.1 37829 38207 + 271 M 126 378 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37830 38207 271 + . gene_id 5 ; sequence gi|815927561|ref|XP_012248310.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37830 38207 . + . KQ414828.1 exonerate:protein2genome:local exon 37830 38207 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37830 38207 271 + . alignment_id 5 ; Query gi|815927561|ref|XP_012248310.1| ; Align 37830 172 378 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927561|ref|XP_012248310.1| PREDICTED: odorant receptor 4-like isoform X2 [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 251 Query range: 184 -> 295 Target range: 18039 -> 18381 185 : MetIleAsnMetTyrGlnIleAlaValThrTyrPheCysPheAspAsnIlePheCysIle : 204 ::::!:::!:!!|||!!.|||!.!|||!:!||||||||||||||||||......|||||| ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIle 18040 : gtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgcttcgacaattttttatgcatC : 18097 205 : LeuAlaIleHisLeuAlaGlyGlnPheArgIleLeuArgTyrArgPheSerLysLeuCys : 224 :!! !:!:||| !||| !|||||||||:!!|||!:!||||||.!.:!!!!.:!! ! MetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnTyrArgMetAlaAsnMetThr 18098 : ATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAATACCGAATGGCGAATATGACC : 18157 225 : AspIle<->GluHisGlnIleAsnGluLysAspMetGluLeuThrIleThrAsn<-><-> : 242 |||:!! !:: ::: ...|||::::::|||:!! !!:!:!:!:!::: AspLeuLysAspLysGluArgLysGluArgAsnMetLysThrSerValSerSerAlaCys 18158 : GATTTAAAGGacaaagagaggaaagagagaaatatgaAGACAAGTGTGAGTTCGGCGTGC : 18217 243 : TyrAlaHisThrPheTyrLysLysLeuLysMetTyrValArgHisHisGlnGluLeuIle : 261 !:!||| !! !|||!!. |||||| |||:!!|||!!.||||||.!.|||||| PheAlaThrGluCysTyrAsnValLeuLysAspTyrIleArgGlnHisGlnAsnLeuIle 18218 : TTTGCAACAGAATGTTACAACGTTCTCAAAGATTATATCAGACAGCATCAGAACCTGATT : 18277 262 : AsnPheCysAspArgLeuGluAsnValTyrThrMetLeuIleLeuGlyGlnValLeuVal : 281 !!:!|||:!!!:!||||||!!.|||!:!!.!!!::!!:!!|||||||||:!!|||:!! AlaTyrCysAsnLysLeuGluLysValPheAsnIleIleValLeuGlyGlnLeuLeuMet 18278 : GCTTATTGCAACAAACTCGAGAAAGTGTTCAATATCATTGTTCTGGGGCAATTGTTAATG : 18337 282 : PheSerValLeuIleCysLeuPheAlaTyrGlnGlyLeuLeu : 295 ||||||:!!|||||||||||| !!.!!:!||| !|||:!! PheSerMetLeuIleCysLeuAspGlyPheGlnIleLeuMet 18338 : TTCAGCATGTTGATCTGTCTCGATGGATTTCAGATACTTATG : 18381 vulgar: gi|815927561|ref|XP_012248310.1| 184 295 . KQ414828.1 18039 18381 + 251 M 42 126 G 0 3 M 15 45 G 0 6 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 18040 18381 251 + . gene_id 6 ; sequence gi|815927561|ref|XP_012248310.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 18040 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18381 . + . insertions 9 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 18040 18381 251 + . alignment_id 6 ; Query gi|815927561|ref|XP_012248310.1| ; Align 18040 185 126 ; Align 18169 227 45 ; Align 18220 242 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927561|ref|XP_012248310.1| PREDICTED: odorant receptor 4-like isoform X2 [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 240 Query range: 304 -> 391 Target range: 19383 -> 19644 305 : IlePheIlePheHisLeuIleGlySerMetAlaLeuLeuPheMetPheThrTyrSerCys : 324 |||||||||||||||:!! !!.!!!!|||..!! !|||.!.|||||||||||||||||| IlePheIlePheHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSerCys 19384 : ATTTTCATCTTTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGCTGC : 19441 325 : AspGlyValIleGluHisSerGluLysValAlaIleGlyAlaTyrSerAlaLeuTrpThr : 344 ||| !!:!!|||..!.!.||| !!....!||| !.!!.!||||||!.!! !|||||| AspCysIleIleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyProTrpThr 19442 : GACTGCATCATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGACA : 19501 345 : IleMetProMetAsnLysProGlyLysMetLeuArgAsnAspLeuIleMetValIleGlu : 364 :!!:!:||||||!:! ! !|||||||||:!!|||!!.||||||!!::!:|||||| ! LeuLeuProMetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuValIleMet 19502 : CTTTTACCAATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCATG : 19561 365 : ArgSerArgArgValCysCysLeuThrAlaAsnArgPhePheProValSerLeuGluThr : 384 ||||||!!! ! !|||||||||||||||!.. !!|||||| !||||||||||||||| ArgSerSerValProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGluThr 19562 : AGATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAACG : 19621 385 : TyrAsnLysIleLeuSerThr : 391 |||!.. !:!!:!! !||| TyrThrGlyValIleValThr 19622 : TACACAGGGGTAATCGTCACC : 19644 vulgar: gi|815927561|ref|XP_012248310.1| 304 391 . KQ414828.1 19383 19644 + 240 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 19384 19644 240 + . gene_id 7 ; sequence gi|815927561|ref|XP_012248310.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 19384 19644 . + . KQ414828.1 exonerate:protein2genome:local exon 19384 19644 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 19384 19644 240 + . alignment_id 7 ; Query gi|815927561|ref|XP_012248310.1| ; Align 19384 305 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927561|ref|XP_012248310.1| PREDICTED: odorant receptor 4-like isoform X2 [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 190 Query range: 53 -> 167 Target range: 16150 -> 16492 54 : ThrArgAspPheTyrPheThrIlePheTyrLysGlyAspIleLeuTyrValThrThrAsn : 73 ......:::...:!!!!. !:!!||| ! ! !! ! !||||||..!.!! !||| AsnAsnAsnLeuHisLeuPheLeuPheArgLeuGlnAlaCysLeuTyrThrAlaCysAsn 16151 : aataataacttgCACTTATTCCTTTTCCGTTTGCAGGCCTGTTTATATACTGCATGCAAC : 16208 74 : IleLeuThrValThrMetGlyLeuIleLysIleCysIleIleMetAlaHisLysGluGlu : 93 ||||||:!!:!!|||!!: !!!!:!!|||||| !:!!:!::!:|||||||||...::: IleLeuSerLeuThrIleProPheLeuLysIleLeuValLeuLeuAlaHisLysAsnAsp 16209 : ATTTTATCGTTAACAATACCGTTTCTCAAGATACTCGTCTTGCTTGCAcacaaaaatgat : 16268 94 : PheIleAsnLeuIleValTyrValArgGlnHisPheTrpAsnValLysTyrAsnPheArg : 113 |||...:::||||||:!!:!!:!!!:!!:!.!.|||! !:!!!.! ! |||:!! ! ! PhePheHisLeuIleLeuHisLeuGlnArgGluPheLeuHisAlaAspTyrAspAspTyr 16269 : ttttttcatttgattcTGCACCTACAACGAGAATTCTTGCATGCAGATTACGACGACTAC : 16328 114 : GluLysGluIleLeuAspAspCysArgLysThrCysThrPhePheValCysSerValThr : 133 ||||||:!!|||||| !! !|||!:!::: !||||||||||||||||||! ! !!||| GluLysLysIleLeuLeuGlyCysGlnArgGlnCysThrPhePheValCysPhePheThr 16329 : GAGAAAAAGATTTTGCTCGGTTGCCAACGTCAATGTACCTTCTTCGTTTGTTTCTTCACA : 16388 134 : IleMetGlyAlaCysAlaIleIleAlaTyrLeuIleThrProValIleAlaAsnAlaGly : 153 :!!.!. ! ! ! .!!:!!|||:!!|||:!!:!!!.!|||:!!|||!.!!!.:!! ! LeuPheThrLysGlyThrValIleSerTyrIleValAsnProLeuIleGlyLysSerIle 16389 : CTTTTCACTAAAGGAACTGTTATCTCGTACATCGTTAATCCGCTTATTGGTAAGTCGATT : 16448 154 : LysAsnAsnSerGluArgValLeuProPheAsnIleTrpLeu : 167 ! ::: !:! ! ! !||| !.!. !.!!|||:!! AspSerLeuAsnThrSerSerLeuIleLeuCysPheTrpIle 16449 : GATTCGTTGAATACATCGAGCTTGATCCTATGCTTCTGGATT : 16492 vulgar: gi|815927561|ref|XP_012248310.1| 53 167 . KQ414828.1 16150 16492 + 190 M 114 342 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 16151 16492 190 + . gene_id 8 ; sequence gi|815927561|ref|XP_012248310.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 16151 16492 . + . KQ414828.1 exonerate:protein2genome:local exon 16151 16492 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 16151 16492 190 + . alignment_id 8 ; Query gi|815927561|ref|XP_012248310.1| ; Align 16151 54 342 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927561|ref|XP_012248310.1| PREDICTED: odorant receptor 4-like isoform X2 [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 176 Query range: 306 -> 388 Target range: 38514 -> 38760 307 : IlePheHisLeuIleGlySerMetAlaLeuLeuPheMetPheThrTyrSerCysAspGly : 326 !!:||| !!!: !.!!:!!::!! !|||!::||||||||||||||||||||| !! MetPheAlaThrMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCys 38515 : ATGTTCGCAACGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGC : 38572 327 : ValIleGluHisSerGluLysValAlaIleGlyAlaTyrSerAlaLeuTrpThrIleMet : 346 :!!! ! !.!.||| !!!.:!!||| !..!!.!|||:!!!.!! !|||! !! !:!: IleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeu 38573 : ATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTA : 38632 347 : ProMetAsnLysProGlyLysMetLeuArgAsnAspLeuIleMetValIleGluArgSer : 366 ||||||:::||| ||||||:::||||||!!.|||||| !:!!:!!||| !|||:!! ProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAla 38633 : CCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCG : 38692 367 : ArgArgValCysCysLeuThrAlaAsnArgPhePheProValSerLeuGluThrTyrAsn : 386 |||||| !! !! !||||||||| ! !!|||||| !!:!!||||||||||||!:!!.! ArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThr 38693 : AGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACT : 38752 387 : LysIle : 388 |||:!! LysVal 38753 : AAGGTA : 38760 vulgar: gi|815927561|ref|XP_012248310.1| 306 388 . KQ414828.1 38514 38760 + 176 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38515 38760 176 + . gene_id 9 ; sequence gi|815927561|ref|XP_012248310.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38515 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38515 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38515 38760 176 + . alignment_id 9 ; Query gi|815927561|ref|XP_012248310.1| ; Align 38515 307 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927561|ref|XP_012248310.1| PREDICTED: odorant receptor 4-like isoform X2 [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 173 Query range: 312 -> 388 Target range: 28556 -> 28784 313 : SerMetAlaLeuLeuPheMetPheThrTyrSerCysAspGlyValIleGluHisSerGlu : 332 .!!:!!::!! !|||!::||||||||||||||||||||| !!:!!! ! !.!.||| ! GlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeu 28557 : GGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTG : 28614 333 : LysValAlaIleGlyAlaTyrSerAlaLeuTrpThrIleMetProMetAsnLysProGly : 352 !!.:!!||| !..!!.!|||:!!!.!! !|||! !! !:!:||||||:::||| ||| AsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGly 28615 : AACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttgga : 28674 353 : LysMetLeuArgAsnAspLeuIleMetValIleGluArgSerArgArgValCysCysLeu : 372 |||:::||||||!!.|||||| !:!!:!!||| !|||:!!|||||| !! !! !||| LysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeu 28675 : aaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTG : 28734 373 : ThrAlaAsnArgPhePheProValSerLeuGluThrTyrAsnLysIle : 388 |||||| ! !!|||||| !!:!!||||||||||||!:!!.!|||:!! ThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 28735 : ACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 28784 vulgar: gi|815927561|ref|XP_012248310.1| 312 388 . KQ414828.1 28556 28784 + 173 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28557 28784 173 + . gene_id 10 ; sequence gi|815927561|ref|XP_012248310.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28557 28784 . + . KQ414828.1 exonerate:protein2genome:local exon 28557 28784 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28557 28784 173 + . alignment_id 10 ; Query gi|815927561|ref|XP_012248310.1| ; Align 28557 313 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927561|ref|XP_012248310.1| PREDICTED: odorant receptor 4-like isoform X2 [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 147 -> 186 Target range: 17818 -> 17935 148 : ValIleAlaAsnAlaGlyLysAsnAsnSerGluArgValLeuProPheAsnIleTrpLeu : 167 :!!:!:|||||| |||||||||...|||||||||:!!||||||||||||!!:|||:!! IleLeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpVal 17819 : ATTTTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTC : 17876 168 : AsnLeuProValSerMetSerProTyrTyrGluMetIlePheThrLeuGlnMetIle : 186 |||||||||:!!||||||!!!||||||||||||::: |||:::||||||:!:::: AsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGlnValLeu 17877 : AACTTGCCATTATCAATGACGCCATATTACgaaataactttttcattaCAGGTAttg : 17935 vulgar: gi|815927561|ref|XP_012248310.1| 147 186 . KQ414828.1 17818 17935 + 157 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17819 17935 157 + . gene_id 11 ; sequence gi|815927561|ref|XP_012248310.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 17819 17935 . + . KQ414828.1 exonerate:protein2genome:local exon 17819 17935 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17819 17935 157 + . alignment_id 11 ; Query gi|815927561|ref|XP_012248310.1| ; Align 17819 148 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr174 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 129 -> 199 Target range: 1224243 -> 1224030 130 : AsnAsnIleLeuAspIleLeuIleProLeuAsnHisThrArgProArgThrValPr : 148 ||| :!!||||||:!!:!! |||||||||.!.||||||||||||! !:!! AsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLeuLe 1224243 : AATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTTT : 1224189 149 : oIleValIleAspTyr<->PheValAspGlnGlnLysPhePheAsnPhePheGlyM : 166 !:!! !:!!..!||| |||:!!|||:!! ! :!! !||| !! ! ! ..!. uLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValAsnP 1224188 : GCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAATT : 1224132 167 : etHisLeuAsnLeuIleThrSerPheGlyGlyLeuGlyIleIleAlaThrGluThr : 184 !.|||||| !! !! !..!! !! ! !!|||:!! !|||||||||..!!!:! ! heHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAspMet 1224131 : TTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATATG : 1224078 185 : IleSerMetAlaMetMetGlnHisLeuCysGlyLeuLeuLysIle : 199 :!!! !!!:.!!!!:!!: |||||||||||||||!!! !:!: LeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaVal 1224077 : TTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: AfOr174 129 199 . KQ414851.1 1224243 1224030 - 116 M 24 72 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224243 116 - . gene_id 1 ; sequence AfOr174 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224243 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224243 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224243 116 - . alignment_id 1 ; Query AfOr174 ; Align 1224244 130 72 ; Align 1224169 154 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427266|ref|XP_003494705.1| PREDICTED: odorant receptor 49a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 456 Query range: 266 -> 402 Target range: 1233759 -> 1233126 267 : PheTyrAspIleLeuAspGluAsnAsnArgIleSerTyrMetIleGlnIleGlyLe : 285 |||||||||||||||:!!|||!:!!:!|||! !||||||:!!||||||:!!||||| PheTyrAspIleLeuAsnGluSerSerArgAsnSerTyrLeuIleGlnValGlyLe 1233759 : TTTTACGATATTCTAAACGAGAGCAGTCGAAATAGCTACTTGATTCAGGTTGGATT : 1233705 286 : uAsnMetIleGlyIleThrThrThrAlaValGln >>>> Target Intron 1 : 297 |||||||!!:||||||!:!..!|||||||||||| 80 bp uAsnMetMetGlyIleSerValThrAlaValGln+- 1233704 : GAACATGATGGGCATTAGCGTGACCGCTGTCCAGgc.................... : 1233667 298 : >>>> ThrValIleAsnPheAspArgProGlyGluSerIleArgSerAlaValL : 313 ||||||:!!!...!.|||||||||!.!|||:!!:!!|||!!!||||||! ++ThrValLeuThrLeuAspArgProAlaGluAlaLeuArgCysAlaValP 1233666 : .....agACAGTCCTCACACTGGACAGGCCGGCAGAAGCTCTTAGATGTGCTGTGT : 1233541 314 : euCysGlyAlaAsnGlnPheHisLeuPheMetLeuSerLeuProGlyGlnIleLeu : 331 !! !! !|||.!.|||||||||||||||!!::!!|||||||||||||||! !||| heLeuValAlaGluGlnPheHisLeuPheIleIleSerLeuProGlyGlnThrLeu 1233540 : TCCTTGTAGCGGAGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACACTC : 1233487 332 : IleAspHisCysThrGluLeuThrLysGln{Le} >>>> Target Intron 2 : 342 :!:||||||||||||:!!|||:!!|||.!.{:!} 70 bp ValAspHisCysThrLysLeuSerLysAsp{Il}++ 1233486 : GTGGATCATTGTACGAAACTATCGAAGGAT{AT}gt.................... : 1233450 343 : >>>> {u}TyrAsnSerThrTrpTyrGlyAlaProValLysValGlnArgMetL : 358 {!}|||::!|||||||||||| !!.!|||!.!||| !!||||||:!:: ++{e}TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValI 1233449 : .....ag{A}TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAA : 1233336 359 : euTyrMetMetGlnIleArgThrArgLysProCysThrLeuThrAlaCysGlyLeu : 376 !!|||! !||||||||||||.!!! !|||||||||..!||||||||| !!|||||| leTyrThrMetGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeu 1233335 : TTTACACGATGCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTG : 1233282 377 : TyrGlnMetAsnIleGluAsnPheGlyThr >>>> Target Intron 3 >>> : 387 |||:!!||||||!!:|||||||||!.!!.! 75 bp TyrGluMetAsnMetGluAsnPheAlaAsn++ 1233281 : TATGAAATGAACATGGAGAACTTTGCAAACgt........................ : 1233247 388 : > ThrPheLysThrCysMetSerTyrIleThrMetIleMetSerLeuLys : 402 ||||||||||||||||||||||||.!!||||||:!:|||||||||!:! ++ThrPheLysThrCysMetSerTyrPheThrMetLeuMetSerLeuArg 1233246 : .agaCATTCAAAACGTGCATGTCATACTTCACAATGCTGATGTCACTTAGA : 1233127 vulgar: gi|350427266|ref|XP_003494705.1| 266 402 . KQ414851.1 1233759 1233126 - 456 M 30 90 5 0 2 I 0 76 3 0 2 M 45 135 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 44 132 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233127 1233759 456 - . gene_id 1 ; sequence gi|350427266|ref|XP_003494705.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233670 1233759 . - . KQ414851.1 exonerate:protein2genome:local exon 1233670 1233759 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233668 1233669 . - . intron_id 1 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1233590 1233669 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233590 1233591 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233453 1233589 . - . KQ414851.1 exonerate:protein2genome:local exon 1233453 1233589 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233451 1233452 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233383 1233452 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1233383 1233384 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233250 1233382 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233382 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 2 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233127 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233127 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233127 1233759 456 - . alignment_id 1 ; Query gi|350427266|ref|XP_003494705.1| ; Align 1233760 267 90 ; Align 1233590 297 135 ; Align 1233382 343 132 ; Align 1233175 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427266|ref|XP_003494705.1| PREDICTED: odorant receptor 49a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 426 Query range: 99 -> 227 Target range: 1229734 -> 1229224 100 : PheArgLysLeuPheAspSerIleThrLysGluTrpGlnGlnLeuLysLeuSerGl : 118 |||||||||::::::::: !:!:|||! !||||||:!!||||||!:!:!!!:!.! PheArgLysMetTyrAsnLeuValThrIleGluTrpGluGlnLeuArgMetAsnAs 1229734 : tttagaaaaatgtataatctCGTGACAATAGAGTGGGAGCAGTTGAGGATGAACGA : 1229680 119 : nAspLeuTyrIleLeuGluGluValThrIleArgGlySerLysMetAlaLysLeuT : 137 .!!::!!:!!:!:|||:!!|||||||||:!:!:!|||||||||:!!|||:!!|||| pGluValHisValLeuGlnGluValThrLeuLysGlySerLysLeuAlaGlnLeuT 1229679 : CGAGGTGCATGTGCTTCAAGAGGTTACTTTGAAAGGTAGTAAATTGGCCCAATTAT : 1229623 138 : yrArg{A} >>>> Target Intron 1 >>>> {sn}ThrLeuLeuIleCys : 144 |||||{|} 126 bp {||}.!!||||||.!!... yrArg{A}++ ++{sn}AlaLeuLeuPheAla 1229622 : ACAGA{A}gt.........................ag{AT}GCTTTACTCTTCGCA : 1229476 145 : MetValLeuPheLeuLeuValProLeuLeuProProMetLeuAspIleValLeuPr : 163 ||| !:!!||||||||||||||||||!!! !||| ||||||||||||||||| MetCysValPheLeuLeuValProLeuPheGlyProAlaLeuAspIleValLeuPr 1229475 : ATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCGTCCTTCC : 1229419 164 : oLeuAsnGluThrArgProArgGlnGlnIleLeuAsnValAsnTyrValIlePheA : 182 |! !||||||||||||||||||||||||:!:!!!!..|||||||||:!!||||||| oSerAsnGluThrArgProArgGlnGlnLeuPheArgValAsnTyrIleIlePheA 1229418 : ATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAATTTTCG : 1229362 183 : spSerAsnAsnTyrPhePheTyrValTyrLeuGlnLeuSerTrpThrSerValVal : 200 ||..! :!!||||||||||||||||||:!!||||||! !||| !!!!:!!||| spGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPheTrpCysThrIleVal 1229361 : ACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACAATCGTT : 1229308 201 : ValSerIleIleIleValThrValAspSerLeuLeuMetLeuIleValHisHisAs : 219 :!! !!!: !|||:!!|||||||||||||||! !|||:!!|||:!!:!!||| LeuValMetAlaIleIleThrValAspSerLeuTyrMetIleIleIleTyrHisAl 1229307 : CTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGATCATAATTTACCATGC : 1229251 220 : nSerGlyLeuPheValValCysGly : 227 !||||||:!!|||!.!:!!|||||| aSerGlyMetPheAlaIleCysGly 1229250 : CAGCGGAATGTTCGCTATATGCGGG : 1229225 vulgar: gi|350427266|ref|XP_003494705.1| 99 227 . KQ414851.1 1229734 1229224 - 426 M 39 117 S 0 1 5 0 2 I 0 122 3 0 2 S 1 2 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229734 426 - . gene_id 2 ; sequence gi|350427266|ref|XP_003494705.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1229617 1229734 . - . KQ414851.1 exonerate:protein2genome:local exon 1229617 1229734 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1229615 1229616 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1229491 1229616 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1229491 1229492 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1229225 1229490 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229490 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229734 426 - . alignment_id 2 ; Query gi|350427266|ref|XP_003494705.1| ; Align 1229735 100 117 ; Align 1229489 140 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427266|ref|XP_003494705.1| PREDICTED: odorant receptor 49a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 414 Query range: 58 -> 334 Target range: 1226074 -> 1222600 59 : IleValLeuTyrGlySerLeuTyrThrLysAsnLeuAspMetValLeuGluCysLe : 77 :!! !:!!|||! !:!!! ! ! !|||:!!!!!||| !|||:!!:!! || LeuLysIleTyrValAlaGlnArgGluLysAspPheAspGlyValMetGlnValLe 1226074 : CTAAAGATCTACGTGGCCCAGCGCGAGAAGGATTTCGATGGGGTCATGCAGGTACT : 1226020 78 : uProHisLeuGlyAlaLeuLeuThrSerValValLysIleLeuAsnValHisLeuA : 96 ||||:!!:!! !|||! ! ! !:!!:!!||||||:!!:!!|||:!!!.!:!!| uProAsnIleIleAlaGlnThrGlyAlaLeuValLysValMetAsnIleArgIleA 1226019 : CCCGAACATTATCGCCCAGACTGGCGCCCTCGTTAAAGTAATGAACATCCGTATCA : 1225963 97 : snArgGluAsn >>>> Target Intron 1 >>>> PheArgLysLeuPheA : 105 ||!:!! ||| 80 bp |||||||||||||||| snLysAlaAsn++ ++PheArgLysLeuPheA 1225962 : ACAAAGCgaacgt.........................agtttcgaaaattattcg : 1225856 106 : spSerIleThrLysGluTrpGlnGlnLeuLysLeuSerGlnAspLeuTyrIleLeu : 123 || !!!:..!::!..!|||:!!! !|||:!! !!.!.!.!!::!! ! |||||| spLeuMetValArgArgTrpLysLeuLeuGluAlaLysAspGluIleGluIleLeu 1225855 : atcTCATGGTACGAAGATGGAAACTGTTGGAAGCAAAGGACGAAATAGAGATACTG : 1225802 124 : GluGluValThrIleArgGlySerLysMetAlaLysLeuTyrArg{A} >>>> T : 139 :!!:!! !|||! !!:!|||! !!:!:!: !:!!||||||!:!{:} LysLysTyrThrSerLysGlyMetArgLeuArgGluLeuTyrLys{A}++ 1225801 : AAGAAATACACCAGTAAAGGGATGAGACTTAGAGAACTGTACAAA{G}gt...... : 1225751 140 : arget Intron 2 >>>> {sn}ThrLeuLeuIleCysMetValLeuPheLeuL : 150 1463 bp {!!}:!!|||! !||| !:!!:!!:!!!:!:!! ++{sp}SerLeuTrpIleValLeuLeuValTyrMetS 1225750 : ...................ag{ac}tCGTTGTGGATAGTTCTGTTAGTATATATGA : 1224258 151 : euValProLeuLeuProProMetLeuAspIleValLeuProLeuAsnGluThrArg : 168 ! !!||||||:!! !|||:!:||||||:!!||| !|||||||||||||||||| erPheProLeuIleAsnProValLeuAspValValAlaProLeuAsnGluThrArg 1224257 : GCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGA : 1224204 169 : ProArgGlnGlnIleLeuAsnValAsnTyrValIlePheAspSerAsnAsnTyrPh : 187 ||||||::!! :!:||| |||!:!|||:!!.!!.!.|||..! !!.!.:!!|| ProArgArgLeuLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPh 1224203 : CCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTT : 1224147 188 : ePheTyrValTyrLeuGlnLeuSerTrpThrSerValValValSerIleIleIleV : 206 |!:! !||| !!!!!!!.|||! ! !:! !:!! ! !.!!!!:!!:|||: eTyrSerValAsnPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleI 1224146 : TTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAA : 1224090 207 : alThrValAspSerLeuLeuMetLeuIleValHisHisAsnSerGlyLeuPheVal : 224 !!.!!||||||! !|||! !!!: !|||:!! !||| !!!!|||||||||!.! leAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAla 1224089 : TCGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCA : 1224036 225 : ValCys-GlyHisGlnIleGlnLysAsnThrArgHisLeuAsnSerPheThrAsnG : 243 ||||||#||| ! ! !.!.::!!!.! ! ! !:!!! !!:!||| !!... ValCys#GlyLysTyrAspAsnArgLysLys***CysIleIleAsnPheLeuThrA 1224035 : GTGTGTGGGTAAATATGATAACCGGAAGAAATAATGCATCATTAATTTTTTGACAA : 1223978 244 : luValMetSerGluArgTyrThrTyrLysGlnIleArgAsnCysValIleMetHis : 261 .! ! ..! ! ||||||||| ::: |||||| :::... rgCysAlaAspTyrLeuTyrThrTyrIleTyrMetCysValCysValCysValGln 1223977 : GGTGTGCTGATTAtctttatacatatatatatatgtgtgtgtgtgtgtgtgtacag : 1223924 262 : AsnLysAlaIle{A} >>>> Target Intron 3 >>>> {sp}PheTyrAs : 269 .....! ! !{ } 446 bp { }!:!! !.! ThrSerAsnSer{A}++ +-{rg}TyrCysGl 1223923 : aCATCGAATTCA{A}gt.........................aa{GA}TACTGCCA : 1223454 270 : pIleLeuAspGluAsnAsnArgIleSerTyrMetIleGlnIleGlyLeuAsnMetI : 288 .||||||!!:..!!:!!:!!:! !! !|||:!!||||||:!!||||||!:!:!!. nIleLeuGluArgSerSerGlnHisMetTyrLeuIleGlnValGlyLeuSerValP 1223453 : GATTCTGGAAAGAAGTAGCCAACATATGTACCTGATTCAAGTAGGATTAAGCGTGT : 1223397 289 : leGlyIleThrThrThrAlaValGln >>>> Target Intron 4 >>>> T : 297 !! !|||!:!..!||||||!.! ! 656 bp heIleIleSerValThrAlaAlaAla++ ++C 1223396 : TCATCATCAGCGTGACGGCTGCCGCAgt.........................agT : 1222714 298 : hrValIleAsnPheAspArgProGlyGluSerIleArgSerAlaValLeuCysGly : 315 !:!!!!:|||.!!|||||||||! !||| !|||||| !|||:!!!!! !! ! ysIleMetAsnIleAspArgProAspGluLeuIleArgLeuAlaMetPheValVal 1222713 : GCATTATGAACATCGACCGACCTGACGAACTCATCAGGCTTGCGATGTTTGTCGTA : 1222660 316 : AlaAsnGlnPheHisLeuPheMetLeuSerLeuProGlyGlnIleLeuIleAspHi : 334 |||...:::|||||||||...!!:||||||||||||||||||!!:|||:!!||||| AlaGlnLysPheHisLeuLeuIleLeuSerLeuProGlyGlnMetLeuLeuAspHi 1222659 : GctcagaaatttcatttgctcATCCTTAGTTTACCTGGGCAAATGTTGTTAGATCA : 1222603 335 : s : 334 | s 1222602 : T : 1222601 vulgar: gi|350427266|ref|XP_003494705.1| 58 334 . KQ414851.1 1226074 1222600 - 414 M 41 123 5 0 2 I 0 76 3 0 2 M 39 117 S 0 1 5 0 2 I 0 1459 3 0 2 S 1 2 M 87 261 F 0 1 M 39 117 S 0 1 5 0 2 I 0 442 3 0 2 S 1 2 M 30 90 5 0 2 I 0 652 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222601 1226074 414 - . gene_id 3 ; sequence gi|350427266|ref|XP_003494705.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1225952 1226074 . - . KQ414851.1 exonerate:protein2genome:local exon 1225952 1226074 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1225950 1225951 . - . intron_id 1 ; splice_site "gt" KQ414851.1 exonerate:protein2genome:local intron 1225872 1225951 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1225872 1225873 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1225754 1225871 . - . KQ414851.1 exonerate:protein2genome:local exon 1225754 1225871 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1225752 1225753 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1224291 1225753 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1224291 1224292 . - . intron_id 1 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1223909 1224290 . - . KQ414851.1 exonerate:protein2genome:local exon 1223909 1224290 . - . insertions 0 ; deletions 0 ; frameshifts 1 KQ414851.1 exonerate:protein2genome:local splice5 1223907 1223908 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1223463 1223908 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1223463 1223464 . - . intron_id 2 ; splice_site "AA" KQ414851.1 exonerate:protein2genome:local cds 1223371 1223462 . - . KQ414851.1 exonerate:protein2genome:local exon 1223371 1223462 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1223369 1223370 . - . intron_id 4 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222715 1223370 . - . intron_id 4 KQ414851.1 exonerate:protein2genome:local splice3 1222715 1222716 . - . intron_id 3 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222601 1222714 . - . KQ414851.1 exonerate:protein2genome:local exon 1222601 1222714 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222601 1226074 414 - . alignment_id 3 ; Query gi|350427266|ref|XP_003494705.1| ; Align 1226075 59 123 ; Align 1225872 100 117 ; Align 1224289 140 261 ; Align 1224027 227 117 ; Align 1223461 267 90 ; Align 1222715 297 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427266|ref|XP_003494705.1| PREDICTED: odorant receptor 49a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 337 Query range: 58 -> 227 Target range: 1246447 -> 1243599 59 : IleValLeuTyrGlySerLeuTyrThrLysAsnLeuAspMetValLeuGluCysLe : 77 ||| !:!!!:!! !:!!:!! !..!|||:!!:!!||| ..!:!!||| !:! IleGlnMetPheGluAlaIleIleValLysAspIleAspAlaThrMetGluThrVa 1246447 : ATACAAATGTTCGAAGCGATAATTGTAAAGGACATCGATGCAACGATGGAAACCGT : 1246393 78 : uProHisLeuGlyAlaLeuLeuThrSerValValLysIleLeuAsnValHisLeuA : 96 !||| :!!! !.!! !|||... |||:::|||:::|||||| ! !:!!| lProValIleValThrGluLeuValCysValIleLysLeuLeuAsnHisIleIleA 1246392 : ACCTGTAATAGTCACCGAATTGgtttgtgtaataaaattgctGAATCATATCATCA : 1246336 97 : snArgGluAsn >>>> Target Intron 1 >>>> PheArgLysLeuPheA : 105 ||!:!! !!!. 1270 bp ||| !||||||!:!| snLysGlyLys++ ++PheAspLysLeuTyrA 1246335 : ATAAAGGAAAGgt.........................agTTCGACAAGTTGTACG : 1245039 106 : spSerIleThrLysGluTrpGlnGlnLeuLysLeuSerGlnAspLeuTyrIleLeu : 123 ||! !!!:! !|||||||||.!...!|||!..|||..!:!!.!. ! |||||| spIleMetLysLysGluTrpAspMetLeuSerLeuAspGluGln---GlnIleLeu 1245038 : ATATCATGAAGAAAGAATGGGATATGTTAAGTCTCGACGAGCAG---CAGATTCTC : 1244988 124 : GluGluValThrIleArgGlySerLysMetAlaLysLeuTyrArg{A} >>>> T : 139 ||||||:!!|||! !||||||||||||:!:.!!!!.:!!||||||{!} GluGluIleThrLysArgGlySerLysLeuThrAsnIleTyrArg{S}++ 1244987 : GAAGAAATCACTAAACGAGGAAGTAAATTAACCAATATATACAGA{A}gt...... : 1244937 140 : arget Intron 2 >>>> {sn}ThrLeuLeuIleCysMetValLeuPheLeuL : 150 1077 bp {:!}||||||!!! !! ! !:!!:!!|||:!!| ++{er}ThrLeuPheTyrPheSerIleIlePheValL 1244936 : ...................ag{GT}ACTTTGTTCTATTTCTCGATAATATTCGTAT : 1243830 151 : euValProLeuLeuProProMetLeuAspIleValLeuProLeuAsnGluThrArg : 168 || !!||||||:!!||||||!!:||||||:!!|||! !|||||||||||||||||| euPheProLeuIleProProIleLeuAspValValSerProLeuAsnGluThrArg 1243829 : TATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGAGACTCGA : 1243776 169 : ProArgGlnGlnIleLeuAsnValAsnTyrValIlePheAspSerAsnAsnTyrPh : 187 !!||| !:::::::::...:::...||| :!:||||||! ...... || SerArgIleGluValIleLysLeuGlnTyr---LeuPheAspMetGluLysAsnPh 1243775 : TCTCGGATAGaagtaataaaattgcaatac---cTGTTCGACAtggagaagaattt : 1243722 188 : ePheTyrValTyrLeuGlnLeuSerTrpThrSerValValValSerIleIleIleV : 206 |::: :::|||:!! ! !.!!||| !||| !!:!!..!! !!!::!!|||: eTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMetValIleI 1243721 : ttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAA : 1243665 207 : alThrValAspSerLeuLeuMetLeuIleValHisHisAsnSerGlyLeuPheVal : 224 !!|||:!!|||:!!|||! !:!!:!!|||:!!||||||!..!!!|||||||||!.! leThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGlyLeuPheAla 1243664 : TCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCT : 1243611 225 : ValCysGly : 227 ||||||||| ValCysGly 1243610 : GTTTGCGGG : 1243600 vulgar: gi|350427266|ref|XP_003494705.1| 58 227 . KQ414851.1 1246447 1243599 - 337 M 41 123 5 0 2 I 0 1266 3 0 2 M 20 60 G 1 0 M 18 54 S 0 1 5 0 2 I 0 1073 3 0 2 S 1 2 M 39 117 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1246447 337 - . gene_id 4 ; sequence gi|350427266|ref|XP_003494705.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1246325 1246447 . - . KQ414851.1 exonerate:protein2genome:local exon 1246325 1246447 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1246323 1246324 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1245055 1246324 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1245055 1245056 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1244940 1245054 . - . KQ414851.1 exonerate:protein2genome:local exon 1244940 1245054 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local splice5 1244938 1244939 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243863 1244939 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1243863 1243864 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1243600 1243862 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243862 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1246447 337 - . alignment_id 4 ; Query gi|350427266|ref|XP_003494705.1| ; Align 1246448 59 123 ; Align 1245055 100 60 ; Align 1244995 121 54 ; Align 1243861 140 117 ; Align 1243744 180 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427266|ref|XP_003494705.1| PREDICTED: odorant receptor 49a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 336 Query range: 267 -> 402 Target range: 1243170 -> 1242524 268 : TyrAspIleLeuAspGluAsnAsnArgIleSerTyrMetIleGlnIleGlyLeuAs : 286 !:!|||! !:!!:!!|||! !!.!!!!! !!!!|||:!!.!!|||:!!|||||||| PheAspThrIleAsnGluIleThrSerThrCysTyrLeuPheGlnValGlyLeuAs 1243170 : TTCGATACCATAAACGAAATCACTAGCACATGTTACTTGTTTCAAGTCGGACTTAA : 1243116 287 : nMetIleGlyIleThrThrThrAlaValGln >>>> Target Intron 1 >> : 297 |||||||||||||!:!..!|||:!!|||! ! 77 bp nMetIleGlyIleSerValThrSerValLeu++ 1243115 : TATGATCGGTATTAGCGTGACGTCTGTTCTAgt....................... : 1243081 298 : >> ThrValIleAsnPheAspArgProGlyGluSerIleArgSerAlaValLeuC : 314 .!! !!||||||.!.|||||||||! !|||! ! !|||! !||| !!!! ++AlaPheIleAsnLeuAspArgProGluGluPheAlaArgIleAlaCysPheL 1243080 : ..agGCCTTTATAAATCTAGATCGGCCTGAAGAATTTGCCAGAATTGCTTGTTTCC : 1242955 315 : ysGlyAlaAsnGlnPheHisLeuPheMetLeuSerLeuProGlyGlnIleLeuIle : 332 ! !|||.!.|||.!!||||||!!.:!::!!|||:!!||||||||||||:!!! euIleAlaGlnGlnLeuHisLeuLeuValIleSerValProGlyGlnIleIleThr 1242954 : TTATAGCTCAGCAACTCCACTTGTTAGTCATTAGTGTACCAGGGCAGATCATCACG : 1242901 333 : AspHisCysThrGluLeuThrLysGln{Le} >>>> Target Intron 2 >> : 342 |||!!. !!:!!:!!||||||! .!.{:!} 72 bp AspGlnSerSerLysLeuThrIleAsp{Il}++ 1242900 : GATCAAAGTTCAAAGTTGACCATTGAC{AT}gt....................... : 1242867 343 : >> {u}TyrAsnSerThrTrpTyrGlyAlaProValLysValGlnArgMetLeuT : 359 {!}|||||||||! !|||||| !.!!|||||| !:!!|||!:!!!:|||: ++{e}TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuH 1242866 : ..ag{A}TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTC : 1242748 360 : yrMetMetGlnIleArgThrArgLysProCysThrLeuThrAlaCysGlyLeuTyr : 377 !!!!::!:|||||||||:!! !!|||||||||! !|||..!||| ! ||||||||| isIleValGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyr 1242747 : ATATAGTACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATAC : 1242694 378 : GlnMetAsnIleGluAsnPheGlyThr >>>> Target Intron 3 >>>> : 387 :!!|||||||||||||||||||||:!! 92 bp GluMetAsnIleGluAsnPheGlySer++ ++ 1242693 : GAAATGAACATTGAGAATTTTGGATCAgt.........................ag : 1242574 388 : ThrPheLysThrCysMetSerTyrIleThrMetIleMetSerLeuLys : 402 |||||||||||||||!!:||||||.!!||||||:!!:!:|||!!!||| ThrPheLysThrCysIleSerTyrPheThrMetLeuLeuSerPheLys 1242573 : acTTTCAAAACCTGCATATCGTACTTTACGATGCTCTTATCATTCAAA : 1242525 vulgar: gi|350427266|ref|XP_003494705.1| 267 402 . KQ414851.1 1243170 1242524 - 336 M 29 87 5 0 2 I 0 73 3 0 2 M 45 135 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 44 132 5 0 2 I 0 88 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242525 1243170 336 - . gene_id 5 ; sequence gi|350427266|ref|XP_003494705.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1243084 1243170 . - . KQ414851.1 exonerate:protein2genome:local exon 1243084 1243170 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1243082 1243083 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243007 1243083 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1243007 1243008 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242870 1243006 . - . KQ414851.1 exonerate:protein2genome:local exon 1242870 1243006 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242868 1242869 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242798 1242869 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1242798 1242799 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242665 1242797 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242797 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 2 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242525 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242525 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242525 1243170 336 - . alignment_id 5 ; Query gi|350427266|ref|XP_003494705.1| ; Align 1243171 268 87 ; Align 1243007 297 135 ; Align 1242797 343 132 ; Align 1242573 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427266|ref|XP_003494705.1| PREDICTED: odorant receptor 49a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 314 Query range: 135 -> 237 Target range: 1234335 -> 1234029 136 : LeuTyrArgAsnThrLeuLeuIleCysMetValLeuPheLeuLeuValProLeuLe : 154 !!!!:! !:!!||||||||| !! !||||||:!!||||||||||||||||||:! PhePheSerAspThrLeuLeuSerPheMetValValPheLeuLeuValProLeuVa 1234335 : TTCTTCTCAGATACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGT : 1234281 155 : uProProMetLeuAspIleValLeuProLeuAsnGluThrArgProArgGlnGlnI : 173 ! !|||.!.||||||:!!|||||||||||||||||||||||||||||||||||| lPheProPheLeuAspValValLeuProLeuAsnGluThrArgProArgGlnGlnG 1234280 : TTTTCCATTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAG : 1234224 174 : leLeuAsnValAsnTyrValIlePheAspSerAsnAsnTyrPhePheTyrValTyr : 191 !!!!!..|||||||||:!! !||||||..! :!!||||||||| !|||||| lyPheArgValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyr 1234223 : GATTCAGAGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTAC : 1234170 192 : LeuGlnLeuSerTrpThrSerValValValSerIleIleIleValThrValAspSe : 210 !!!||||||:!!||| !:!!||||||||| !!!:||||||:!!||||||||||| PheGlnLeuAlaTrpGlyAlaValValValValMetIleIleIleThrValAspSe 1234169 : TTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTC : 1234113 211 : rLeuLeuMetLeuIleValHisHisAsnSerGlyLeuPheValValCysGlyHisG : 229 ||||! !|||:!!|||:!!|||||| !||||||:!!|||!.!||||||||| ! . rLeuTyrMetIleIleIleHisHisAlaSerGlyMetPheAlaValCysGly***M 1234112 : GTTGTACATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTGTGCGGGTAAA : 1234056 230 : lnIleGlnLysAsnThrArgHisLeu : 237 .! !!:! ! .!. !!:!|||||| et***ArgTyrGlnGlyLysHisLeu 1234055 : TGTAACGATATCAAGGAAAACATTTA : 1234030 vulgar: gi|350427266|ref|XP_003494705.1| 135 237 . KQ414851.1 1234335 1234029 - 314 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234030 1234335 314 - . gene_id 6 ; sequence gi|350427266|ref|XP_003494705.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234030 1234335 . - . KQ414851.1 exonerate:protein2genome:local exon 1234030 1234335 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234030 1234335 314 - . alignment_id 6 ; Query gi|350427266|ref|XP_003494705.1| ; Align 1234336 136 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427266|ref|XP_003494705.1| PREDICTED: odorant receptor 49a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 284 Query range: 99 -> 227 Target range: 1240295 -> 1239821 100 : PheArgLysLeuPheAspSerIleThrLysGluTrpGlnGlnLeuLysLeuSerGl : 118 |||:::...||| |||:!:..!:!!:!!|||:!!:!!|||!:!:!!|||.! PheLysAsnLeuCysIleSerValValGluLysTrpGluGluLeuArgIleSerAs 1240295 : tttaaaaatttatgcattTCTGTGGTGGAAAAATGGGAAGAGTTGAGGATCAGTAA : 1240241 119 : nAspLeuTyrIleLeuGluGluValThrIleArgGlySerLysMetAlaLysLeuT : 137 .!!:||| !:!:||||||||||||||| !!:!|||||||||......:::|||| nGluLeuSerValLeuGluGluValThrAlaGlnGlySerLysPheValGlnLeuT 1240240 : CGAGTTAAGCGTGCTGGAAGAAGTTACCGCCCAAGGGAGcaaatttgtacaattgt : 1240184 138 : yrArgAsnThrLeuLeuIleCysMetValLeuPheLeuLeu >>>> Target I : 151 |||||!:! !! ::: ::: ||| ||| 90 yrArgSerGluTyrArgLeuPheLeuSerLeuArgLeuAsn-+ 1240183 : aCAGAAGCGAGTAtcgtttgtttctttcattaagactgaattt............. : 1240140 152 : ntron 1 >>>> ValProLeuLeuProProMetLeuAspIleValLeuProLeu : 164 bp ||||||:::...||||||:::|||||||||:!! !|||||| -+ValProIlePheProProLeuLeuAspIleLeuLysProLeu 1240139 : ............tgGTTCcgatttttcctcctcttctggACATTTTAAAACCTTTA : 1240013 165 : AsnGluThrArgProArgGlnGlnIleLeuAsnValAsnTyrValIlePheAspSe : 183 |||||||||||| !!||||||:::|||......|||||||||:!!|||.!!|||!! AsnGluThrArgAlaArgGlnLysIlePheLysValAsnTyrLeuIleIleAspAr 1240012 : AACGAAACCCGAGCACgccagaaaatattcaaagttaaTTACCTGATCATTGACAG : 1239956 184 : rAsnAsnTyrPhePheTyrValTyrLeuGlnLeuSerTrpThrSerValValValS : 202 !:!!.!. ! !.!. !..!|||!!!!!.||||||||||||!!!:!!..!:!!. gAspGluGlnAlaLeuIleThrTyrPheHisLeuSerTrpThrThrIleThrLeuG 1239955 : GGATGAACAAGCTCTGATCACATATTTTCACTTGTCTTGGACAACTATCACTCTTG : 1239899 203 : erIleIleIleValThrValAspSerLeuLeuMetLeuIleValHisHisAsnSer : 220 !!||| !:!::!!!:! !!!:! !:!!! !:!:|||:!!:!!||||||!.!||| lyIleSerValLeuSerSerGluLeuIleTyrValLeuLeuIleHisHisThrSer 1239898 : GGATATCTGTGCTTAGCTCAGAATTGATATACGTCCTTCTTATTCATCATACCAGC : 1239845 221 : GlyLeuPheValValCysGly : 227 |||||||||!.!|||..!||| GlyLeuPheAlaValAlaGly 1239844 : GGTCTGTTTGCTGTGGCTGgg : 1239822 vulgar: gi|350427266|ref|XP_003494705.1| 99 227 . KQ414851.1 1240295 1239821 - 284 M 51 153 5 0 2 I 0 86 3 0 2 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240295 284 - . gene_id 7 ; sequence gi|350427266|ref|XP_003494705.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1240143 1240295 . - . KQ414851.1 exonerate:protein2genome:local exon 1240143 1240295 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1240141 1240142 . - . intron_id 1 ; splice_site "tt" KQ414851.1 exonerate:protein2genome:local intron 1240053 1240142 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1240053 1240054 . - . intron_id 0 ; splice_site "TG" KQ414851.1 exonerate:protein2genome:local cds 1239822 1240052 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240052 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240295 284 - . alignment_id 7 ; Query gi|350427266|ref|XP_003494705.1| ; Align 1240296 100 153 ; Align 1240053 151 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427266|ref|XP_003494705.1| PREDICTED: odorant receptor 49a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 156 Query range: 342 -> 384 Target range: 1228545 -> 1228419 343 : TyrAsnSerThrTrpTyrGlyAlaProValLysValGlnArgMetLeuTyrMetMe : 361 |||::!|||||||||||| !!.! !!!.!||| !!||||||:!::!!|||||||| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 362 : tGlnIleArgThrArgLysProCysThrLeuThrAlaCysGlyLeuTyrGlnMetA : 380 ||||||||||.!!! !|||||||||! !||||||||| !!|||||||||:!!|||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 381 : snIleGluAsnPhe : 384 ||!!:||||||||| snMetGluAsnPhe 1228433 : ACATGGAGAACTTT : 1228420 vulgar: gi|350427266|ref|XP_003494705.1| 342 384 . KQ414851.1 1228545 1228419 - 156 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228420 1228545 156 - . gene_id 8 ; sequence gi|350427266|ref|XP_003494705.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228420 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228420 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228420 1228545 156 - . alignment_id 8 ; Query gi|350427266|ref|XP_003494705.1| ; Align 1228546 343 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427266|ref|XP_003494705.1| PREDICTED: odorant receptor 49a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 153 Query range: 293 -> 343 Target range: 1228764 -> 1228614 294 : AlaValGlnThrValIleAsnPheAspArgProGlyGluSerIleArgSerAlaVa : 312 :!! !!|||! !:!!:!! !.!.|||||||||.!!|||:!!||||||! !:!!|| SerPheGlnIleMetLeuAlaLeuAspArgProSerGluAlaIleArgTyrSerVa 1228764 : TCTTTCCAGATAATGCTCGCCCTGGATAGACCGAGCGAAGCTATTAGATATTCTGT : 1228710 313 : lLeuCysGlyAlaAsnGlnPheHisLeuPheMetLeuSerLeuProGlyGlnIleL : 331 |:!! !|||!.! |||||||||||||||!!::!!|||||||||||||||! !| lValLeuGlyGlyAlaGlnPheHisLeuPheIleIleSerLeuProGlyGlnThrL 1228709 : GGTTCTTGGAGGTGCGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACAC : 1228653 332 : euIleAspHisCysThrGluLeuThrLysGlnLeuTyr : 343 ||:!:|||||||||||| !||||||!!..!.:!!||| euValAspHisCysThrMetLeuThrAsnAspMetTyr 1228652 : TCGTGGATCATTGTACCATGCTAACGAACGATATGTAC : 1228615 vulgar: gi|350427266|ref|XP_003494705.1| 293 343 . KQ414851.1 1228764 1228614 - 153 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228615 1228764 153 - . gene_id 9 ; sequence gi|350427266|ref|XP_003494705.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228615 1228764 . - . KQ414851.1 exonerate:protein2genome:local exon 1228615 1228764 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228615 1228764 153 - . alignment_id 9 ; Query gi|350427266|ref|XP_003494705.1| ; Align 1228765 294 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427266|ref|XP_003494705.1| PREDICTED: odorant receptor 49a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 144 Query range: 290 -> 342 Target range: 1238840 -> 1238684 291 : ThrThrThrAlaValGlnThrValIleAsnPheAspArgProGlyGluSerIleAr : 309 |||:!! !!.! !!||||||||| |||.!.||| !||| !! !:!!:!:|| ThrSerPheValPheGlnThrValGlyAsnIleAspAspProThrValAlaLeuAr 1238840 : ACTTCATTTGTTTTCCAGACAGTGGGGAATATAGACGATCCGACAGTAGCTTTGAG : 1238786 310 : gSerAlaValLeuCysGlyAlaAsnGlnPheHisLeuPheMetLeuSerLeuProG : 328 |!:!|||..!:!!!! ||||||!!.|||.!!|||||||||!!::!!|||:!!|||| gAsnAlaThrValTrpGlyAlaLysGlnIleHisLeuPheIleIleSerIleProG 1238785 : AAACGCTACGGTCTGGGGGGCTAAGCAAATTCACCTGTTCATCATCAGTATACCTG : 1238729 329 : lyGlnIleLeuIleAspHisCysThrGluLeuThrLysGlnLeu : 342 |||||:!:|||||||||||||||..!||||||:!!!!..!.:!! lyGlnValLeuIleAspHisCysValGluLeuSerAsnAspMet 1238728 : GACAGGTGCTTATAGATCATTGTGTGGAGCTGTCAAACGACATG : 1238685 vulgar: gi|350427266|ref|XP_003494705.1| 290 342 . KQ414851.1 1238840 1238684 - 144 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1238685 1238840 144 - . gene_id 10 ; sequence gi|350427266|ref|XP_003494705.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1238685 1238840 . - . KQ414851.1 exonerate:protein2genome:local exon 1238685 1238840 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1238685 1238840 144 - . alignment_id 10 ; Query gi|350427266|ref|XP_003494705.1| ; Align 1238841 291 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427266|ref|XP_003494705.1| PREDICTED: odorant receptor 49a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 58 -> 104 Target range: 1234767 -> 1234629 59 : IleValLeuTyrGlySerLeuTyrThrLysAsnLeuAspMetValLeuGluCysLe : 77 |||! !:!!|||! !..!|||! ! !||||||:!!||| |||:!!|||||||| IleGluIleTyrValGlnLeuCysGluLysAsnMetAspAlaValIleGluCysLe 1234767 : ATCGAGATATATGTACAACTTTGTGAGAAGAATATGGACGCAGTGATCGAGTGTTT : 1234713 78 : uProHisLeuGlyAlaLeuLeuThrSerValValLysIleLeuAsnValHisLeuA : 96 ||||:!! ! !||| ! !|||||||||||||||:!:|||||||||:!!|||| uProAsnGlyIleAlaAlaAlaThrSerValValLysLeuLeuAsnValTyrLeuA 1234712 : GCCGAATGGTATCGCAGCCGCGACCAGCGTGGTGAAATTGTTGAACGTTTACTTAA : 1234656 97 : snArgGluAsnPheArgLysLeuPhe : 104 ||||||||||| ! ||| !!!||| snArgGluAsnValArgAlaPhePhe 1234655 : ACAGGGAAAATGTACGTGCCTTCTTT : 1234630 vulgar: gi|350427266|ref|XP_003494705.1| 58 104 . KQ414851.1 1234767 1234629 - 128 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234630 1234767 128 - . gene_id 11 ; sequence gi|350427266|ref|XP_003494705.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234630 1234767 . - . KQ414851.1 exonerate:protein2genome:local exon 1234630 1234767 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234630 1234767 128 - . alignment_id 11 ; Query gi|350427266|ref|XP_003494705.1| ; Align 1234768 59 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427266|ref|XP_003494705.1| PREDICTED: odorant receptor 49a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 54 -> 104 Target range: 1229944 -> 1229794 55 : IleProMetSerIleValLeuTyrGlySerLeuTyrThrLysAsnLeuAspMetVa : 73 :!!! !..!! !|||! !:!!|||! !..!||| !! !||||||:!!||| :! ValGlnGlnLeuIleGluMetTyrValGlnLeuArgLysLysAsnMetAspAspMe 1229944 : GTTCAACAGTTGATCGAGATGTATGTGCAATTGCGTAAGAAGAATATGGACGATAT : 1229890 74 : lLeuGluCysLeuProHisLeuGlyAlaLeuLeuThrSerValValLysIleLeuA : 92 !:!!||| !!!!! !!:!! ! !||| ! !||||||:!!||||||:!:|||| tMetGluSerPheAlaAsnThrIleAlaAlaAlaThrSerLeuValLysLeuLeuA 1229889 : GATGGAGAGTTTTGCGAATACTATTGCTGCCGCGACCAGCCTGGTGAAATTGTTGA : 1229833 93 : snValHisLeuAsnArgGluAsnPheArgLysLeuPhe : 104 |||||:!!||||||||||||||| ! ||| !!!||| snValTyrLeuAsnArgGluAsnValArgAlaPhePhe 1229832 : ACGTTTACTTAAACAGGGAAAATGTACGTGCCTTCTTT : 1229795 vulgar: gi|350427266|ref|XP_003494705.1| 54 104 . KQ414851.1 1229944 1229794 - 101 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229795 1229944 101 - . gene_id 12 ; sequence gi|350427266|ref|XP_003494705.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229795 1229944 . - . KQ414851.1 exonerate:protein2genome:local exon 1229795 1229944 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229795 1229944 101 - . alignment_id 12 ; Query gi|350427266|ref|XP_003494705.1| ; Align 1229945 55 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425706|ref|XP_003494207.1| PREDICTED: odorant receptor 13a-like, partial [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 260 -> 364 Target range: 258222 -> 258624 261 : PheCysLeuThrGlyTyrArgMetIleThrSerValAspGlnGluGlnAlaAspValP : 280 ||| !:!! !.!.||| :::||| |||||| !:!! PheProIleHisSerTyrSerValIlePheTyrTyrPheGlnGluTrpSerThrGlnA 258223 : TTTCCTATACACAGctattctgttattttttattattttcaggaATGGTCTACGCaag : 258280 281 : roIleValGlyMetMetPhePheIleIleHisValIleTyrThrMetLeuHisLeuPh : 299 ||| ...::: ::!.!!!!: :!!|||! ...::::::|| spIleGlnAsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePh 258281 : atattcaaaatttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttt : 258337 300 : eIleTyrCysTyrIleGlyGluMetLeuLeuGlyGlu >>>> Target Intron : 312 |::: |||||||||||||||!!:||| !! !:!! 90 bp eValIleCysTyrIleGlyGluIleLeuThrGluGln++ 258338 : tgtaatatgttACATAGGTGAAATATTAACAGAACAGgt................... : 258378 313 : 1 >>>> SerThrGlyValGlyGlnAlaAlaTyrGluCysAspTrpTyrAspLeuPr : 328 !!!! ! !||||||.!.!.!!.!||| ! ||||||||| !!||||| ++CysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuPr 258379 : ......agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACC : 258514 329 : oProLysAsnAlaIleSerLeuIleIleValIleCysArgAlaLysValSerPheGln : 347 | !|||!.. !:!!..!||||||:!:||||||...|||:!!!..||| ! !!||| oAspLysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGln 258515 : TGACAAAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAA : 258571 348 : IleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsnAlaVal : 364 |||||||||||||||||| ...|||:!! ! !|||!:!! !||| IleThrAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAspVal 258572 : ATCACCGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATGTG : 258624 vulgar: gi|350425706|ref|XP_003494207.1| 260 364 . KQ414889.1 258222 258624 + 151 M 51 153 5 0 2 I 0 86 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258223 258624 151 + . gene_id 1 ; sequence gi|350425706|ref|XP_003494207.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 258223 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258223 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258223 258624 151 + . alignment_id 1 ; Query gi|350425706|ref|XP_003494207.1| ; Align 258223 261 153 ; Align 258466 312 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425706|ref|XP_003494207.1| PREDICTED: odorant receptor 13a-like, partial [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 286 -> 364 Target range: 234839 -> 235147 287 : PheIleIleHisValIleTyrThrMetLeuHisLeuPheIleTyrCysTyrIleGlyG : 306 !:!:!!||| !:!:! !! !! !!.::::::||||||:::||||||||||||| TyrValIleValTyrValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyG 234840 : TACGTCATCGTGTACGTGTCCATGACATTtaatatattcatattttgttACATCGGAG : 234897 307 : luMetLeuLeuGlyGlu >>>> Target Intron 1 >>>> SerThrGlyVal : 315 ||! !||| !! !:!! 74 bp !!!||| !||| luThrLeuThrGluGln++ ++CysThrLysVal 234898 : AGACGCTTACAGAGCAGgt.........................agTGTACCAAAGTC : 234998 316 : GlyGlnAlaAlaTyrGluCysAspTrpTyrAspLeuProProLysAsnAlaIleSerL : 335 |||:!! !!.!||| ! !!!:|||||| ||||||! !|||!.!|||:!!.!!| GlyGluLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyL 234999 : GGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTT : 235058 336 : euIleIleValIleCysArgAlaLysValSerPheGlnIleThrAlaGlyLysPheSe : 354 ||:!!!!::!!|||! !|||:!!!..:!! !.!.:!!|||||||||||||||||| euValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheLe 235059 : TGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCT : 235115 355 : rProPheSerLeuGluLeuPheAsnAlaVal : 364 !! !.!.|||:!!! ! !|||..!! !||| uGlnMetSerValAlaThrPheGlyAspVal 235116 : ACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: gi|350425706|ref|XP_003494207.1| 286 364 . KQ414889.1 234839 235147 + 148 M 25 75 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234840 235147 148 + . gene_id 2 ; sequence gi|350425706|ref|XP_003494207.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234840 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234840 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234840 235147 148 + . alignment_id 2 ; Query gi|350425706|ref|XP_003494207.1| ; Align 234840 287 75 ; Align 234989 312 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425706|ref|XP_003494207.1| PREDICTED: odorant receptor 13a-like, partial [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 0 -> 232 Target range: 266673 -> 267375 1 : LeuGlyValTrpProGluProArgLysValSerArgGlySerArgLeuLeuSerSerI : 20 :!!|||!.!|||||| ! ! ! ..!|||!:! !..!|||:!!:!!|||! ! IleGlyAlaTrpProProLeuSerLeuThrSerLysLeuGluArgIleValSerTyrA 266674 : ATAGGCGCTTGGCCGCCGTTGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACG : 266731 21 : leIlePheTrpPheThrThrIleValThrPheThrPheIleCysAlaProGlnThrAl : 39 !:!:.!! !!! ! ! ! !:!!.!. !|||! ! !||| ! laLeuIle---ValIleCysTyrCysSerIleLeuPheThrValIleProCysLeuPh 266732 : CTTTGATC---GTCATCTGCTACTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTT : 266785 40 : aAsnLeuValLeuLysSerThrAsnLeuAspGluIleIleGluAsnLeuSerIleAsn : 58 !:!!|||||||||:!!..! !!:!:!! ! !! !:!::!! !!!.!! ! eHisLeuValLeuGluAspGluSerIleArgThrLysValLysValPheGlyProLeu 266786 : TCATCTCGTTCTGGAGGACGAGAGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTG : 266842 59 : IleProIleAlaPheAlaLeuValLysGlnIleValLeuArgTyrTyrLysLysAlaL : 78 ! !! ! ! !!!.! !:!!!!. ! ! !..!||| ! !!..|||! !: SerHisTrpPheValGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluI 266843 : AGCCATTGGTTCGTCGGAGGAATTAACTACACCACACTGTTGCTACGCAGCAAAGAGA : 266902 79 : euThrLeuLeuLeuSerGlnMetPheAspAspTrpAsnGluProIleAlaAsnGlnAs : 97 !! ! !! !:!!..!!!.||| ||||||!.. !! ! ! :!!|| leArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAs 266903 : TACGCGGTTGCGTAGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGA : 266959 98 : pArgGlnThrMetLeuLysAsnAlaLysIleSerArgMetIleSerIleValCysSer : 116 |!:!|||..!|||||||||||||||!:!|||.!!||| |||:!!||| !!|||:!! pLysGlnValMetLeuLysAsnAlaArgIleGlyArgTyrIleAlaIlePheCysAla 266960 : CAAGCAGGTGATGTTGAAGAACGCGAGGATCGGTCGTTACATTGCTATATTCTGCGCG : 267016 117 : ThrLeuThrTyr<-><->LeuMetLeuPheAlaPheIleSerLeuGlnIleTrpSerA : 134 .!!!!!! ! ! :!!:!: !!:!..! ! |||!!! ! ! ! !..!! AlaPheMetGlnCysGlyValLeuGlyTyrCysValIleThrAlaPheThrMetGlnT 267017 : GCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGTGATAACGGCGTTCACTATGCAGA : 267076 135 : snMetGlnSerAlaSerGluAlaAspLeuGlyGlyLeuLeuHisProAlaThrPhePr : 153 .!:!!:!! !!.!!:!|||.!! :!!! ! !||||||! ! !|||..!!:! hrValGluValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaValTyrLy 267077 : CCGTGGAAGTCGGTAACGAGACTAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAA : 267133 154 : o<-><->TyrAspIleSerLysSerProAsnPheGluIleThrTrpLeuGlyGlnPhe : 170 ! !! :!!..!! ||||||!.. !||||||..! :!!..!|||||| sLysMetIleAlaValAspThrSerProThrAsnGluIleValLeuValSerGlnPhe 267134 : GAAGATGATCGCAGTTGATACCAGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTC : 267190 171 : MetGlyThrValLeuThrAlaIleCysTyrSerCysPheAspThrPheLeuAlaValL : 190 :!:..! ! !!:!!..! ! !! ! ! !! ! !!:!.!! !||||||! ValSerGlyPheIleValAsnSerSerValValGlyAlaPheSerLeuAlaAlaValP 267191 : GTATCAGGATTCATCGTGAATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGT : 267250 191 : euValLeuHisLeuCysGlyGlnLeuThrValLeuArgMetAlaLeuGluAspLeuAl : 209 !!!.! !||| !||||||||||||!:!||||||! !||| !:!!:!!!!:!!!!. heAlaAlaHisAlaCysGlyGlnLeuSerValLeuMetMetTrpIleLysGluPheVa 267251 : TCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGT : 267307 210 : aAsnThrThrLysLysAspAsnAsnTyrAlaArgPheHisGluArgLeuGlyPheIle : 228 !||| !:!!!:! ! ..!|||!!. !!!.! !!||| !!:!:!:!!||| ! :!! lAsnArgSerArgAspSerAsnLysAsnValCysPhe---AspLysIleGlyValVal 267308 : GAACCGATCCAGAGATAGCAATAAGAACGTTTGCTTC---GATAAGATTGGCGTGGTC : 267361 229 : ValAsnArgHis : 232 |||.!.!.!||| ValGluHisHis 267362 : GTTGAACATCAT : 267375 vulgar: gi|350425706|ref|XP_003494207.1| 0 232 . KQ414889.1 266673 267375 + 123 M 22 66 G 1 0 M 97 291 G 0 6 M 33 99 G 0 6 M 68 204 G 1 0 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266674 267375 123 + . gene_id 3 ; sequence gi|350425706|ref|XP_003494207.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266674 267375 . + . KQ414889.1 exonerate:protein2genome:local exon 266674 267375 . + . insertions 12 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 266674 267375 123 + . alignment_id 3 ; Query gi|350425706|ref|XP_003494207.1| ; Align 266674 1 66 ; Align 266740 24 291 ; Align 267037 121 99 ; Align 267142 154 204 ; Align 267346 223 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425706|ref|XP_003494207.1| PREDICTED: odorant receptor 13a-like, partial [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 314 -> 368 Target range: 254283 -> 254445 315 : ValGlyGlnAlaAlaTyrGluCysAspTrpTyrAspLeuProProLysAsnAlaIleS : 334 ||||||:!!!.!!.!||| ! ||||||||| !!||||||! !!:!!.. !:!!. ValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuA 254284 : GTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCG : 254341 335 : erLeuIleIleValIleCysArgAlaLysValSerPheGlnIleThrAlaGlyLysPh : 353 .!||||||:!::!!||| |||:!!!!.||| ! !!:!!|||||||||||||||.. spLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLysIl 254342 : ATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaaaat : 254398 354 : eSerProPheSerLeuGluLeuPheAsnAlaValLeuLysThrSer : 368 . ...|||||| ! !|||..!! !||| !:!!|||!:! ePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 254399 : attccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 254445 vulgar: gi|350425706|ref|XP_003494207.1| 314 368 . KQ414889.1 254283 254445 + 113 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254284 254445 113 + . gene_id 4 ; sequence gi|350425706|ref|XP_003494207.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254284 254445 . + . KQ414889.1 exonerate:protein2genome:local exon 254284 254445 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254284 254445 113 + . alignment_id 4 ; Query gi|350425706|ref|XP_003494207.1| ; Align 254284 315 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425706|ref|XP_003494207.1| PREDICTED: odorant receptor 13a-like, partial [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 314 -> 367 Target range: 244667 -> 244826 315 : ValGlyGlnAlaAlaTyrGluCysAspTrpTyrAspLeuProProLysAsnAlaIleS : 334 ||||||:!!!.!!.!||| ! ||||||||| !!||||||! !!:!!.. !:!!. ValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuA 244668 : GTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCG : 244725 335 : erLeuIleIleValIleCysArgAlaLysValSerPheGlnIleThrAlaGlyLysPh : 353 .!||||||:!::!!||| |||:!!!!.:!! ! !!:!!||||||||||||||| ! spLeuIleLeuIleIleLysArgSerAsnMetValValGluIleThrAlaGlyLysVa 244726 : ATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCACCGCTGGAAAAGT : 244782 354 : eSerProPheSerLeuGluLeuPheAsnAlaValLeuLysThr : 367 ! !! !.!.|||||| ! !|||..!! !||| !:!!||| lLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThr 244783 : ATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 244826 vulgar: gi|350425706|ref|XP_003494207.1| 314 367 . KQ414889.1 244667 244826 + 106 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244668 244826 106 + . gene_id 5 ; sequence gi|350425706|ref|XP_003494207.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244668 244826 . + . KQ414889.1 exonerate:protein2genome:local exon 244668 244826 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244668 244826 106 + . alignment_id 5 ; Query gi|350425706|ref|XP_003494207.1| ; Align 244668 315 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425706|ref|XP_003494207.1| PREDICTED: odorant receptor 13a-like, partial [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 0 -> 232 Target range: 274419 -> 275121 1 : LeuGlyValTrpProGluProArgLysValSerArgGlySerArgLeuLeuSerSerI : 20 :!!|||!.!|||||| ! !! ! ..!!!!!:! !..!|||:!!|||||| !: IleGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLeuSerHisL 274420 : ATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACC : 274477 21 : leIlePheTrpPheThrThrIleValThrPheThrPheIleCysAlaProGlnThrAl : 39 :::::...:::... ! ! !!! !.!!:!! !:!! !|||...! ! euLeuIlePheLeuCysTyrCysPheIleLeuSerThrVal---IleProSerIlePh 274478 : ttttaatcttcctttgctACTGCTTCATACTCTCCACCGTT---ATCCCAAGCATATT : 274531 40 : aAsnLeuValLeuLysSerThrAsnLeuAspGluIleIleGluAsnLeuSerIleAsn : 58 !:!!:!!:!!||| !..! !!:!||| !! !! :!::!! |||.!! ! ! eHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeu 274532 : TCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTC : 274588 59 : IleProIleAlaPheAlaLeuValLysGlnIleValLeuArgTyrTyrLysLysAlaL : 78 !! ! !.!!!.! !:!!!!. ! ! !..!||| ! !!..|||! !: GlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluI 274589 : GGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGA : 274648 79 : euThrLeuLeuLeuSerGlnMetPheAspAspTrpAsnGluProIleAlaAsnGlnAs : 97 !! ! !! !:!!..!!!.||| ||||||!.. !! ! ! :!!|| leArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAs 274649 : TACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGA : 274705 98 : pArgGlnThrMetLeuLysAsnAlaLysIleSerArgMetIleSerIleValCysSer : 116 |!:!|||..!|||||||||||||||||||||.!!||| :!!:!!||| !!|||:!! pGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAla 274706 : TCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCG : 274762 117 : ThrLeuThrTyr<-><->LeuMetLeuPheAlaPheIleSerLeuGlnIleTrpSerA : 134 .!!!!!! ! ! :!!:!:! !!:!..! ! |||!!! ! ! ! !..!! AlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGlnT 274763 : GCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGA : 274822 135 : snMetGlnSerAlaSerGluAlaAspLeuGlyGlyLeuLeuHisProAlaThrPhePr : 153 .!:!:||| !!.!!:!|||.!! !! ! !:!!|||! ! !.!!!:! hrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLy 274823 : CCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAA : 274879 154 : o<-><->TyrAspIleSerLysSerProAsnPheGluIleThrTrpLeuGlyGlnPhe : 170 ! !! :!:..!! !||||||!.. !||||||..! !..!|||||| sLysIleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnPhe 274880 : GAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTC : 274936 171 : MetGlyThrValLeuThrAlaIleCysTyrSerCysPheAspThrPheLeuAlaValL : 190 :!!..! ! !!:!!..! ! !! ! !! !!:!.!! !||||||! ValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValP 274937 : GTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGT : 274996 191 : euValLeuHisLeuCysGlyGlnLeuThrValLeuArgMetAlaLeuGluAspLeuAl : 209 !!!.! !||| !! !|||||||||!:!||||||! !!!: !:!! !!:!!!!. heAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheVa 274997 : TCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGT : 275053 210 : aAsnThrThrLysLysAspAsnAsnTyrAlaArgPheHisGluArgLeuGlyPheIle : 228 !||| !:!!!:! ! ...|||... ... ||| !||| :!!||| ! :!! lAsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGlu---IleGlyValVal 275054 : GAATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAG---ATCGGCGTGGTT : 275107 229 : ValAsnArgHis : 232 |||.!.!.!||| ValGluHisHis 275108 : GTCGAACATCAT : 275121 vulgar: gi|350425706|ref|XP_003494207.1| 0 232 . KQ414889.1 274419 275121 + 104 M 33 99 G 1 0 M 86 258 G 0 6 M 33 99 G 0 6 M 70 210 G 1 0 M 8 24 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274420 275121 104 + . gene_id 6 ; sequence gi|350425706|ref|XP_003494207.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274420 275121 . + . KQ414889.1 exonerate:protein2genome:local exon 274420 275121 . + . insertions 12 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 274420 275121 104 + . alignment_id 6 ; Query gi|350425706|ref|XP_003494207.1| ; Align 274420 1 99 ; Align 274519 35 258 ; Align 274783 121 99 ; Align 274888 154 210 ; Align 275098 225 24 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425706|ref|XP_003494207.1| PREDICTED: odorant receptor 13a-like, partial [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 274 -> 364 Target range: 277371 -> 277713 275 : GluGlnAlaAspValProIleValGlyMetMetPhePheIleIleHisValIleTyrT : 294 ||| !:!!||| ! !:!! ! !|||! !.!!!!: !:!!|||! !! GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 295 : hrMetLeuHisLeuPheIleTyrCysTyrIleGlyGluMetLeuLeuGlyGluSer{T : 313 ...::::::||| ! |||||||||||||||!!:||| !! !:!! !{! etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGlnVal{I 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGGTA{A : 277486 314 : h} >>>> Target Intron 1 >>>> {r}GlyValGlyGlnAlaAlaTyrGlu : 321 } 72 bp {!} !||||||:!!!.!!.!||| ! l}-+ +-{e}LysValGlyGluValValTyrMet 277487 : T}tt.........................aa{A}AAAGTTGGTGAGGTGGTTTATATG : 277582 322 : CysAspTrpTyrAspLeuProProLysAsnAlaIleSerLeuIleIleValIleCysA : 341 :!!|||||| !!|||||| !|||:!! !:!!!:!|||:!!:!!:!!|||! | ThrAsnTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerA 277583 : ACGAATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAA : 277642 342 : rgAlaLysValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLe : 360 ||:!!!..::: ...:::|||||||||||||||... ...|||:!! ! rgSerSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrTh 277643 : GATCTAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACAC : 277699 361 : uPheAsnAlaVal : 364 !|||..!! !||| rPheGlyAspVal 277700 : GTTCGGCGATGTA : 277713 vulgar: gi|350425706|ref|XP_003494207.1| 274 364 . KQ414889.1 277371 277713 + 103 M 38 114 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277713 103 + . gene_id 7 ; sequence gi|350425706|ref|XP_003494207.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277487 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277487 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277488 277489 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 277488 277559 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277558 277559 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 277560 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277560 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277713 103 + . alignment_id 7 ; Query gi|350425706|ref|XP_003494207.1| ; Align 277372 275 114 ; Align 277561 314 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350423776|ref|XP_003493588.1| PREDICTED: odorant receptor 67c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 4 -> 261 Target range: 278561 -> 279338 5 : SerThrThrPheAspTyrTyrIleLeuProAsnLysIlePheCysSerIleValGlyI : 24 !:!||| !!:: ||| !:!!! ! !|||::: ||| !!.! :!!|||: AsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyV 278562 : AACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCG : 278619 25 : leTrpProIleGlyGluArgSerSerThrCysSerLysIlePheAlaTyrPheArgLe : 43 !!||||||:!!.!! !! !!!!|||! ..!|||||| !:!! !!! ! alTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAl 278620 : TATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGC : 278676 44 : uIleValSerLeuIleAlaIleSerAsnPhePheValPro<->GluIleMetAlaVal : 61 !:!!:!!|||! !.!! !|||.!! !.!!!!.|||||| ! :!: .!!||| aLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrVal 278677 : GTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTG : 278733 62 : AlaPheTyrTrpGlyAspValGluThrValIleGlyIleGlySerAsnLeuMetSerA : 81 ! ! ! ||||||:!!!!:||| !||| !!!: !.!! !|||! ! !. LeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheC 278734 : CTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCT : 278793 82 : laThrGlnLeuPhePheLysMetIleTyrLeuValAlaArgArgGluArgValTyrAr : 100 .!|||..! ! .!!||| ! !|||:!!:!!||| !!! !:!:!! !!: ysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLy 278794 : GCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAA : 278850 101 : gLeuTyrAsnGluIleArgIleLeuTrpAspSerThrAspAspProAsnGluArgLys : 119 !! ! |||!!:||||||! !|||..! !||| !... !...:::...::: sCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGlu 278851 : ATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagag : 278907 120 : SerTyrGluGlnIleAlaTyrGlnAlaArgIle<->ValThrIleThrPheSerSerC : 138 ... ||| :!: ! !!...||||||||| !:!!:!:.!!.!!! !|||. GluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerA 278908 : gagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCG : 278967 139 : ysPheLeuCysAsnLeuThrThrPheSerIleAlaThrIleAlaAspTyrPheArgPh : 157 .! !!!! !!! ! ! ! !!! ! !.!!.!!:!: ! ! ||| ! ! laGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaVa 278968 : CCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGT : 279024 158 : eAlaTyrAsnGlyAsnAsnThrAsnAspAsnArgHisLeuProPheLeuValTrpTyr : 176 ! .!. !! !:!!!.!.!. ||| !! ! !!|||! !:!!!:: ! lArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArg 279025 : ACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGC : 279081 177 : Gly<->ThrAspIleSerAlaSerProLysPheGluIleAlaPheValGlyGlnValM : 195 ||| !||| !!.!!||||||..!|||||||||!.! !! !||| !: GlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysL 279082 : GGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCT : 279141 196 : etThrAlaMetIleGlyLeuSerAlaIleThrAlaIleAspCysThrPheMetThrMe : 214 !!.!!|||.!.:!! !! !|||!.!! !..!!.! ! ! !! !.!! ..!.! euAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPh 279142 : TGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTT : 279198 215 : tIleLeuHisValSerGlyGlnPheIleLeuIleLysThrTrpIleAsnLysIleGly : 233 .:!!:!!||||||!!!|||||||||! :!!:!! !||| !:!::!!|||:!! ! eValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIle 279199 : CGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATC : 279255 234 : PheGluMetSerHisLysSerIleAspMetAspLysPheGluGluAspLeuPheLysC : 253 !! !:!!!.! !:!!.! ..!:!!..!! ! !|||:!! ||| ! AspGlyValLysGlyArgLys---SerLeuSerThrHisGluGlnArgLeuGlyAspI 279256 : GACGGAGTGAAAGGGAGGAAG---AGCTTGAGCACGCATGAACAACGACTGGGAGATA : 279312 254 : ysIleArgHisHisGlnArgMetIle : 261 !|||..!||||||! !!:!!!::!: leIleGluHisHisLeuLysIleLeu 279313 : TCATCGAGCATCATCTGAAGATACTG : 279338 vulgar: gi|350423776|ref|XP_003493588.1| 4 261 . KQ414889.1 278561 279338 + 127 M 52 156 G 0 3 M 74 222 G 0 3 M 47 141 G 0 3 M 63 189 G 1 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278562 279338 127 + . gene_id 1 ; sequence gi|350423776|ref|XP_003493588.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278562 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278562 279338 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278562 279338 127 + . alignment_id 1 ; Query gi|350423776|ref|XP_003493588.1| ; Align 278562 5 156 ; Align 278721 57 222 ; Align 278946 131 141 ; Align 279090 178 189 ; Align 279279 242 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350423776|ref|XP_003493588.1| PREDICTED: odorant receptor 67c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 4 -> 261 Target range: 284508 -> 285285 5 : SerThrThrPheAspTyrTyrIleLeuProAsnLysIlePheCysSerIleValGlyI : 24 ..!||| !!:: ||| !:!!! ! !|||::: ||| !!.! :!!|||: AspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyV 284509 : GACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCG : 284566 25 : leTrpProIleGlyGluArgSerSerThrCysSerLysIlePheAlaTyrPheArgLe : 43 !!||||||:!!.!! !! !!!!|||! ..!|||||| !:!! !!! ! alTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAl 284567 : TATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGC : 284623 44 : uIleValSerLeuIleAlaIleSerAsnPhePheValPro<->GluIleMetAlaVal : 61 !:!!:!!|||! !.!! !|||.!! !.!!!!.|||||| ! :!: .!!||| aLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrVal 284624 : GTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTG : 284680 62 : AlaPheTyrTrpGlyAspValGluThrValIleGlyIleGlySerAsnLeuMetSerA : 81 ! ! ! ||||||:!!!!:||| !||| !!!: !.!! !|||! ! !. LeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheC 284681 : CTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCT : 284740 82 : laThrGlnLeuPhePheLysMetIleTyrLeuValAlaArgArgGluArgValTyrAr : 100 .!! !..! ! .!!||| ! !|||:!!:!!||| !!! !:!:!! !!: ysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGl 284741 : GCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCA : 284797 101 : gLeuTyrAsnGluIleArgIleLeuTrpAspSerThrAspAspProAsnGluArgLys : 119 !! ! !!.!!:|||||| !|||..! !||| !...! !!:::::...::: nCysValLysAspIleArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGlu 284798 : ATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagag : 284854 120 : SerTyrGluGlnIleAlaTyrGlnAlaArgIle<->ValThrIleThrPheSerSerC : 138 ... ||| :!: ! !!...||||||||| !:!!:!:.!!.!!! !!!!. GluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysA 284855 : gagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCG : 284914 139 : ysPheLeuCysAsnLeuThrThrPheSerIleAlaThrIleAlaAspTyrPheArgPh : 157 .! !!!! !!! ! ! !|||! ! !.!!|||:!: ! ! ! !! ! ! laGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysThrVa 284915 : CCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGT : 284971 158 : eAlaTyrAsnGlyAsnAsnThrAsnAspAsnArgHisLeuProPheLeuValTrpTyr : 176 ! .!. !! !:!!!.!.!. ! ||| !! ! !!|||! !:!!!:: ! lArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArg 284972 : ACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGC : 285028 177 : Gly<->ThrAspIleSerAlaSerProLysPheGluIleAlaPheValGlyGlnValM : 195 ||| !||| !!.!!||||||..!|||||||||!.! !! !||| !: GlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysL 285029 : GGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCT : 285088 196 : etThrAlaMetIleGlyLeuSerAlaIleThrAlaIleAspCysThrPheMetThrMe : 214 !!.!!|||.!.:!! !! !|||!.!! !..!!.! ! ! !! ! ! ..!.! euAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPh 285089 : TGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTT : 285145 215 : tIleLeuHisValSerGlyGlnPheIleLeuIleLysThrTrpIleAsnLysIleGly : 233 .:!!:!!||||||!!!|||||||||! :!!:!! !||| !:!::!!|||:!!! ! eValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuVal 285146 : CGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTC : 285202 234 : PheGluMetSerHisLysSerIleAspMetAspLysPheGluGluAspLeuPheLysC : 253 !! !:!!!.! !:!!.! ! :!!..!! ! !|||:!! ||| ! AspGlyValLysGlyArgLys---GlyLeuSerThrHisGluGlnArgLeuGlyAspI 285203 : GACGGAGTGAAAGGGAGGAAG---GGGTTGAGCACGCATGAACAACGACTGGGAGATA : 285259 254 : ysIleArgHisHisGlnArgMetIle : 261 !|||..!||||||! !!:!!!::!: leIleGluHisHisLeuLysIleLeu 285260 : TCATCGAGCATCATCTGAAGATACTG : 285285 vulgar: gi|350423776|ref|XP_003493588.1| 4 261 . KQ414889.1 284508 285285 + 114 M 52 156 G 0 3 M 74 222 G 0 3 M 47 141 G 0 3 M 63 189 G 1 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284509 285285 114 + . gene_id 2 ; sequence gi|350423776|ref|XP_003493588.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284509 285285 . + . KQ414889.1 exonerate:protein2genome:local exon 284509 285285 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284509 285285 114 + . alignment_id 2 ; Query gi|350423776|ref|XP_003493588.1| ; Align 284509 5 156 ; Align 284668 57 222 ; Align 284893 131 141 ; Align 285037 178 189 ; Align 285226 242 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427979|ref|XP_003494946.1| PREDICTED: odorant receptor 67c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 283 -> 350 Target range: 305627 -> 305934 284 : GluSerValGlyAspSerValTyrPheCysSerTrpTyrHisIleProLysAsnValA : 303 ...||||||||| ||| !!:!.!. !||||||||||||:!!|||! !!...! SerSerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrI 305628 : AGTAGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGA : 305685 304 : laLysGlyIleValPheValIleMetLysSerGlnAspProValSerLeuLysAlaGl : 322 ! ! |||:!!:!!!!.:!!||| ! !|||...:!!|||!.!!.!:!!!..||||| leHisGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGl 305686 : TACATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGG : 305742 323 : yLysPhePheIleValAsnMetGluThrTyrMetAsn >>>> Target Intron : 335 |||| ! !! !:!!::!:!:...|||!:! ||| 106 bp yLysValValAspLeuSerLeuSerThrPheGlyAsn++ 305743 : TAAAGTAGTTGATTTATCTTTATCCACATTTGGAAACgt................... : 305783 336 : 1 >>>> IleLeuLysThrSerMetSerTyrLeuSerValLeuArgValMetVal : 350 :!!||||||||||||:!::!!||||||||| !!||||||..!! ||| ++ValLeuLysThrSerLeuAlaTyrLeuSerPheLeuArgThrThrVal 305784 : ......agGTTCTGAAAACGTCATTAGCGTATTTAAGTTTCCTTCGGACTACCGTT : 305934 vulgar: gi|350427979|ref|XP_003494946.1| 283 350 . KQ414889.1 305627 305934 + 153 M 51 153 5 0 2 I 0 102 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305628 305934 153 + . gene_id 1 ; sequence gi|350427979|ref|XP_003494946.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305628 305780 . + . KQ414889.1 exonerate:protein2genome:local exon 305628 305780 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305781 305782 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305781 305886 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305885 305886 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305887 305934 . + . KQ414889.1 exonerate:protein2genome:local exon 305887 305934 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305628 305934 153 + . alignment_id 1 ; Query gi|350427979|ref|XP_003494946.1| ; Align 305628 284 153 ; Align 305887 335 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 1230 Query range: 0 -> 405 Target range: 1710200 -> 1713324 1 : MetSerPheIleLysThrAspAspIleSerValArgLeuThrSerValPheMetLy : 19 |||!.!!!..!!||||||||||||:!!.!! !!!!!:!!||||||:!!|||:!!|| MetLysLeuPheLysThrAspAspLeuGlyPheSerValThrSerMetPheValLy 1710201 : ATGAAATTGTTCAAGACTGACGACTTAGGTTTCAGCGTGACTTCGATGTTCGTGAA : 1710255 20 : sLeuValGlyLeuTrpMetAlaThrGluArgSerGluGlnArgIleArgAsnIleT : 38 |:!!:!!|||||||||||||||! !.!.!:!! !||||||!.!:!!||||||:!:| sMetIleGlyLeuTrpMetAlaLysAsnGlnPheGluGlnHisValArgAsnValT 1710256 : AATGATCGGATTGTGGATGGCGAAAAATCAGTTCGAGCAACATGTCAGAAACGTGA : 1710312 39 : hrValGlyTyrThrLeuValAlaIleMetPheAlaMetTrpLeuGlnThrThrAsp : 56 ||:!! !||||||... ::: |||!.!.!.!:::!!:!!.!!|||:!! hrLeuPheTyrThrPhePhePheValSerPheGlyPheTyrValGluAlaThrAsn 1710313 : CGTTGTTCTACacattcttcttcgtttccttcGGATTCTACGTGGAAGCTACGAAC : 1710366 57 : MetTyrTyrSerTrpGlyAspPheSer >>>> Target Intron 1 >>>> : 66 :!!|||:!!||||||||||||.!!||| 468 bp LeuTyrHisSerTrpGlyAspLeuSer++ ++ 1710367 : CTGTACCACTCGTGGGGCGATCTCAGCgt.........................ag : 1710862 67 : AlaCysLeuPheAspAlaCysAsnIleLeuSerLeuThrMetProPheIleLysIl : 84 ! ! ||||||||| !|||!.!:!!||||||:!!! !|||||| !|||||||| AspThrLeuPheAspIleCysThrLeuLeuSerValIleMetProAlaIleLysIl 1710863 : GACACACTGTTCGACATATGCACTCTTCTGTCGGTGATAATGCCCGCTATCAAAAT : 1710918 85 : eLeuValLeuLeuAlaHisLysGluAspPhePheArgLeuIlePheTyrLeuGlnA : 103 |:!!:!!|||!!! !:!!||||||!!:||||||||||||||| ! ||| !:!!| eIleIleLeuPheIleAsnLysGluGluPhePheArgLeuIleValTyrThrGluA 1710919 : AATCATCCTGTTTATCAACAAGGAGGAGTTTTTCCGTTTGATCGTGTACACAGAGC : 1710975 104 : rgLysPheLeuHisGlyAsnTyrAsnAspTyrGluArgLysIleValIleSerCys : 121 ||:!!|||:!!:!!|||:!!||||||!!: !!|||||||||||||||.!!..!||| rgGlnPheMetAsnGlyAspTyrAsnGluAspGluArgLysIleValPheAspCys 1710976 : GACAATTCATGAACGGGGATTACAACGAGGACGAGAGGAAGATTGTGTTCGATTGT : 1711029 122 : LysArgLysCysThrPhePheIleCysPhePheThrLeuPheThrLeuAlaThrVa : 140 |||||| !||||||||||||! !||||||.!!:!!! ! ! ||||||:!! !|| LysArgLeuCysThrPhePheThrCysPheLeuSerSerValThrLeuSerCysVa 1711030 : AAACGCCTGTGTACATTCTTCACTTGTTTCCTCTCATCTGTGACTTTATCGTGCGT : 1711086 141 : lAlaSerTyrIleIleAsnProLeuVal{A} >>>> Target Intron 2 >> : 150 | !||||||:!!:!!!.!|||:!! !{ } 119 bp lLeuSerTyrValValThrProIleTyr{M}++ 1711087 : TCTCTCTTACGTCGTCACTCCAATTTAC{A}gt....................... : 1711119 151 : >> {la}AsnIleGlyArgAsnGluSerAspArgValLeuProPheAsnMetTrp : 166 { !}|||||||||||||||||||||||||||:!!|||||||||!!.|||||| ++{et}AsnIleGlyArgAsnGluSerAspArgIleLeuProPheLysMetTrp 1711120 : ..ag{TG}AATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTGG : 1711283 167 : IleAspLeuProLeuThrValThrProTyrTyrGluIleIlePheValLeuGln : 185 ||||||:!!||| !:!!:!!|||||||||:::||||||...|||...|||||| IleAspIleProThrSerMetThrProTyrPheGluIlePhePheThrLeuGln++ 1711284 : ATTGATATACCGACATCGATGACACcgtattttgaaatattcttcaccTTACAGgt : 1711340 186 : >>>> Target Intron 3 >>>> ValLeuSerLeuTyrHisIleGlyIleSe : 194 546 bp ||||||||| !|||!!.||||||:!:|| ++ValLeuSerAlaTyrGlnIleGlyValSe 1711341 : .........................agGTTTTATCCGCGTATCAAATTGGCGTGAG : 1711913 195 : rTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGlnP : 213 |||| !|||||||||||| !!|||||||||||||||||||||:!!||| !|||| rTyrGlyCysPheAspAsnValLeuCysIleMetAsnLeuHisLeuAlaThrGlnP 1711914 : TTACGGTTGCTTCGACAACGTTCTATGCATCATGAACCTACACTTGGCCACTCAGT : 1711970 214 : heArgValLeuGlnTyrArgIleAlaAsnMetProAspLeuMetAspLysValLys : 231 |||||:!!||||||:!!|||:!:!.!|||!!: !! !|||! !..!||| !! ! heArgIleLeuGlnHisArgLeuValAsnIleAsnGlyLeuLysSerLysGlnThr 1711971 : TTCGAATACTGCAACATAGACTGGTGAATATAAACGGTCTGAAGAGCAAACAGACA : 1712024 232 : GlnSerGlyAspLysIleLeuAsnThrGlySerSerCysLeuAlaAsnGluCysTy : 250 ! !..! !! !:!!! ! !! !! !! !|||!!! !!!|||:!!.!.! !|| ProGluLysGlyGluThrSerIleIleAspSerThrGluPheAlaAspAsnSerTy 1712025 : CCGGAGAAAGGTGAAACGTCGATTATAGATTCGACAGAATTTGCGGATAACTCTTA : 1712081 251 : rSerIlePheLysLysTyrIleArgGlnHisGlnAlaLeuIleAlaTyrCysGlyL : 269 |..!:!!||||||!:!! !:!!||||||||||||:!!|||!!:|||!:!||| | rAspValPheLysArgCysValArgGlnHisGlnSerLeuMetAlaPheCysGluL 1712082 : CGACGTTTTCAAAAGATGCGTTCGTCAACATCAATCTCTGATGGCTTTCTgcgaga : 1712138 270 : ysLeuGluGluValPheSerLeuIleIleLeuGluGlnValLeuMetPheSerLeu : 287 |||||||||||:::||||||:!!|||||||||! !|||:!!|||:!!||||||:!! ysLeuGluGluMetPheSerMetIleIleLeuGlyGlnLeuLeuValPheSerIle 1712139 : aactcgaagaaatgTTCAGTATGATTATACTGGGGCAATTGTTAGTGTTCAGTATT : 1712192 288 : LeuIleCysLeuAspGlyTyrGlnValLeuMet >>>> Target Intron 4 : 299 !!!!!:|||||||||! !! !|||||||||:!! 142 bp PheMetCysLeuAspValCysGlnValLeuLeu++ 1712193 : TTTATGTGTCTCGACGTGTGCCAAGTACTTCTGgt..................... : 1712230 300 : >>>> AlaAsnAlaSerThrSerIleArgValIlePheIleCysHisIleLeuAl : 315 !!..!||||||..!.!!! !!:!:::|||||| |||::! !!. ++ProGlyAlaSerValGlyLysGlnMetIlePheThrPheHisLeuAlaGl 1712231 : ....agCCAGGTGCATCTGTGGGTAAACAGAtgattttcacgtttcacctAGCGGG : 1712418 316 : aCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluS : 334 !|||:!!||||||||||||||||||||||||||||||||||||||||||! !|||| yCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleThrGluS 1712419 : ATGTATGTGTCAATTGCTGATGTTTACGTACAGCTGCGATTGTATAATAACGGAAA : 1712475 335 : erAlaSerIleAlaThrAlaAlaTyrLysGlyProTrpLeuIleLeuProMetSer : 352 || !!:!:!:.!! !|||!.!||| ! |||||||||! ! !|||||||||||| erLeuAsnValThrGluAlaValTyrAspGlyProTrpProArgLeuProMetSer 1712476 : GTTTGAACGTGACGGAAGCGGTGTACGATGGACCATGGCCACGTTTGCCAATGAGC : 1712529 353 : ThrSerGlyArgMetMetArgLysAspLeuThrLeuIleIleLeuArgSerHisIl : 371 |||!!!|||||||||!!:||||||||||||! !|||:!!|||:!!||||||...:! ThrArgGlyArgMetIleArgLysAspLeuIleLeuValIleIleArgSerArgVa 1712530 : ACGAGAGGAAGAATGATAAGGAAGGATTTGATACTCGTTATCATAAGATCGAGAGT : 1712586 372 : eProCysCysLeuThrGlyLysGlyPhePheValValSerLeuGluThrTyrThrS : 390 !|||||||||||||||!.!!:!||||||||||||:!!||||||||||||||||||! lProCysCysLeuThrAlaArgGlyPhePheValIleSerLeuGluThrTyrThrL 1712587 : ACCTTGTTGCTTGACCGCCAGAGGATTCTTCGTAATATCTTTGGAAACGTATACGA : 1712643 391 : er >>>> Target Intron 5 >>>> ValLeuSerThrAlaAlaSerTyrP : 399 .! 634 bp |||:!!|||||||||!.!||||||| ys++ ++ValIleSerThrAlaValSerTyrP 1712644 : AGgt.........................agGTTATAAGTACAGCAGTGTCGTACT : 1713304 400 : heThrLeuLeuArgGlnArg : 405 |||||||||||||||||||| heThrLeuLeuArgGlnArg 1713305 : TCACACTGTTAAGGCAACGT : 1713324 vulgar: gi|350425964|ref|XP_003494289.1| 0 405 . KQ414915.1 1710200 1713324 + 1230 M 65 195 5 0 2 I 0 464 3 0 2 M 84 252 S 0 1 5 0 2 I 0 115 3 0 2 S 1 2 M 34 102 5 0 2 I 0 542 3 0 2 M 114 342 5 0 2 I 0 138 3 0 2 M 92 276 5 0 2 I 0 630 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1710201 1713324 1230 + . gene_id 1 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1710201 1710395 . + . KQ414915.1 exonerate:protein2genome:local exon 1710201 1710395 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1710396 1710397 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1710396 1710863 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1710862 1710863 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1710864 1711116 . + . KQ414915.1 exonerate:protein2genome:local exon 1710864 1711116 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711117 1711118 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711117 1711235 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1711234 1711235 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711236 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711236 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712227 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712228 1712229 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712228 1712369 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1712368 1712369 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1712370 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712370 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 5 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 5 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 4 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713324 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713324 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1710201 1713324 1230 + . alignment_id 1 ; Query gi|350425964|ref|XP_003494289.1| ; Align 1710201 1 195 ; Align 1710864 66 252 ; Align 1711238 151 102 ; Align 1711886 185 342 ; Align 1712370 299 276 ; Align 1713280 391 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 985 Query range: 0 -> 404 Target range: 1692073 -> 1696254 1 : MetSerPheIleLysThrAspAspIleSerValArgLeuThrSerValPheMetLy : 19 ||| !!!.:!::!!!:! ! |||||||||:!! !! !:!!! ! !!!!.||||| MetHisLeuValGlnSerLysAspIleSerIleValTrpSerPhePheLeuMetLy 1692074 : ATGCATTTAGTGCAGAGTAAAGATATCTCGATCGTTTGGTCGTTCTTTTTGATGAA : 1692128 20 : sLeuValGlyLeuTrpMetAlaThrGluArgSerGluGlnArgIleArgAsnIleT : 38 |:!!||||||||||||:!:|||.!!!!:..!:!!||||||||| ||||||.!!. sIleValGlyLeuTrpLeuAlaAlaAspGluAlaGluGlnArgArgArgAsnPheA 1692129 : AATCGTAGGTCTGTGGCTAGCCGCCGACGAGGCTGAACAACGTCGGAGAAATTTCG : 1692185 39 : hrValGlyTyrThrLeuValAlaIleMetPheAlaMetTrpLeuGlnThrThrAsp : 56 !!:!! !||||||||| !||||||.!..!!||| !!! :!! !! !! !||| laLeuIleTyrThrLeuAsnAlaIlePheIleAlaSerCysIleAlaMetArgAsp 1692186 : CGCTGATTTACACGCTGAACGCGATTTTTATCGCTTCGTGTATAGCAATGAGAGAT : 1692239 57 : MetTyrTyrSerTrpGlyAspPheSer >>>> Target Intron 1 >>>> : 66 !!:|||||||||||||||:!! ! !:! 1732 bp IleTyrTyrSerTrpGlyAsnValAsn++ ++ 1692240 : ATATACTATTCCTGGGGAAACGTGAACgt.........................ag : 1693999 67 : AlaCysLeuPheAspAlaCysAsnIleLeuSerLeuThrMetProPheIleLysIl : 84 ! !|||:!!!:!! !!.!||||||||||||! !|||.!!!!: !|||.!!||||| AspCysIleTyrValGlyCysAsnIleLeuTyrLeuAlaIleValPhePheLysIl 1694000 : GACTGCATTTACGTCGGGTGCAACATTTTATACCTAGCGATCGTTTTCTTCAAGAT : 1694055 85 : eLeuValLeuLeuAlaHisLysGluAspPhePheArgLeuIlePheTyrLeuGlnA : 103 ||||||||||! ! !|||!:! !!!:|||!:! !!|||||| !:! !|||. eLeuValLeuTyrLysHisArgIleGluPheTyrGlyLeuIleArgPheThrGlnG 1694056 : CCTCGTTTTGTACAAGCACAGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAG : 1694112 104 : rgLysPheLeuHisGlyAsnTyrAsnAspTyrGluArgLysIleValIleSerCys : 121 .!||||||! !||| !:!!||||||... |||!:! !|||:!! !..!||| luLysPheTrpHisPheAspTyrAsnSerArgGluLysLeuIleLeuSerGluCys 1694113 : AGAAATTCTGGCATTTCGACTATAATTCACGGGAGAAGTTAATTTTATCCGAGTGC : 1694166 122 : LysArgLysCysThrPhePheIleCysPhePheThrLeuPheThrLeuAlaThrVa : 140 |||!:!! !|||||| !!|||||| ! !|||!:!!!!! !|||! !!.!||| LysLysIleCysThrValPheIleValAlaPheSerPheCysThrGlnGlyThrCy 1694167 : AAGAAGATATGTACCGTTTTCATCGTTGCCTTCAGCTTCTGTACTCAGGGCACGTG : 1694223 141 : lAlaSerTyrIleIleAsnProLeuVal{A} >>>> Target Intron 2 >> : 150 !|||.!!|||:!!:!:!..|||:!!:!!{|} 100 bp sAlaGlyTyrValValThrProIleLeu{A}++ 1694224 : TGCTGGTTACGTAGTGACACCTATTTTA{g}gt....................... : 1694256 151 : >> {la}AsnIleGlyArgAsnGluSerAspArgValLeuProPheAsnMetTrp : 166 {||}|||:!!|||!:!|||:!!|||!!:|||:!!|||||||||||||||||| ++{la}AsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTrp 1694257 : ..ag{CA}AATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTGG : 1694401 167 : IleAspLeuProLeuThrValThrProTyrTyrGluIleIlePheValLeuGln : 185 :!!|||!!!||| ! !:!!:!!||||||||||||:!!:!!|||:!!:!!||| ValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGln++ 1694402 : GTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGgt : 1694458 186 : >>>> Target Intron 3 >>>> ValLeuSerLeuTyrHisIleGlyIleSe : 194 409 bp ..!|||!!!:!!||||||:!!||||||!! ++ThrLeuCysValTyrHisValGlyIleCy 1694459 : .........................agACACTTTGCGTGTACCATGTCGGTATATG : 1694894 195 : rTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGlnP : 213 !|||.!.||||||||||||.!!||| !!:!!:!!||||||||||||||| !|||| sTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGlnP 1694895 : TTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAAT : 1694951 214 : heArgValLeuGlnTyrArgIleAlaAsnMetProAspLeuMetAspLysValLys : 231 |||||:!!||||||||||||.!! !|||:!! !:!!:!!!!:!!: ||| heArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGlu------Lys 1694952 : TTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAG------AAG : 1694999 232 : GlnSerGlyAspLysIleLeuAsnThrGlySerSerCysLeuAlaAsnGluCysTy : 250 |||!!!! !! !::: |||... |||! !!!! !!!!.!! !!!: !!|| GlnThrAspGlyArgGluLeuGluIleGlyTyrThrAsnPheThrValAspSerTy 1695000 : CAAACAGACGGTcgagaattggaaattggtTACACAAATTTCACAGTCGATAGTTA : 1695056 251 : rSerIlePheLysLysTyrIleArgGlnHisGlnAlaLeuIleAlaTyrCysGlyL : 269 |! ! !!!.|||!..! !:!:!:! ! ||||||||||||! !!.!|||||| !| rLeuGlnLeuLysSerCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysL 1695057 : CTTACAATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAA : 1695113 270 : ysLeuGluGluValPheSerLeuIleIleLeuGluGlnValLeuMetPheSerLeu : 287 ||||||||.!.:!!|||||||||:!!:!:|||! !|||||||||.!..!.:!!:!! ysLeuGluAsnIlePheSerLeuLeuValLeuGlyGlnValLeuPheLeuAlaMet 1695114 : AGTTGGAGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATG : 1695167 288 : LeuIleCysLeuAspGlyTyrGlnValLeuMet >>>> Target Intron 4 : 299 :!!:!!||||||! |||||||||:!!!!!:!! 415 bp ValLeuCysLeuValGlyTyrGlnLeuPheLeu++ 1695168 : GTACTTTGCCTCGTGGGATATCAGCTATTTCTGgt..................... : 1695205 300 : >>>> AlaAsnAlaSerThrSerIleArgValIlePheIleCysHisIleLeuAl : 315 .!!:!!:!! !! !!|||! !!.!||| !!!.:!! !:!!:!: !!. ++ThrAspSerProProSerArgAsnValGlyLeuValLeuAsnLeuAlaGl 1695206 : ....agACAGACTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGG : 1695666 316 : aCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluS : 334 ! !||||||||||||!!!||||||||||||||||||||| !!:!:! !||||||| yThrLeuCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGluS 1695667 : CACTTTGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGA : 1695723 335 : erAlaSerIleAlaThrAlaAlaTyrLysGlyProTrpLeuIleLeuProMetSer : 352 || !..!:!!::!! !|||!.!!:! ! !!|||||| !! !|||||||||..! erMetAspValSerArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAsp 1695724 : GCATGGACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGAT : 1695777 353 : ThrSerGlyArgMetMetArgLysAspLeuThrLeuIleIleLeuArgSerHisIl : 371 ! !!:!|||!:!! :!!|||:!!..!:!! !:!!:!:|||:!!||||||:!!! ArgAsnGlyLysSerValArgGlnSerMetLeuMetValIleMetArgSerAsnAr 1695778 : AGAAATGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAG : 1695834 372 : eProCysCysLeuThrGlyLysGlyPhePheValValSerLeuGluThrTyrThrS : 390 !||||||||||||!.!!..||||||||| !|||||||||||||||||||||. gCysCysCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrG 1695835 : GTGTTGCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTG : 1695891 391 : er >>>> Target Intron 5 >>>> ValLeuSerThrAlaAlaSerTyrP : 399 !! 319 bp ||||||||||||||| !||||||| ly++ ++ValLeuSerThrAlaMetSerTyrP 1695892 : GGgt.........................agGTCCTCAGCACTGCAATGTCATACT : 1696237 400 : heThrLeuLeuArgGln : 404 ||||||||||||||||| heThrLeuLeuArgGln 1696238 : TTACACTACTGAGACAA : 1696254 vulgar: gi|350425964|ref|XP_003494289.1| 0 404 . KQ414915.1 1692073 1696254 + 985 M 65 195 5 0 2 I 0 1728 3 0 2 M 84 252 S 0 1 5 0 2 I 0 96 3 0 2 S 1 2 M 34 102 5 0 2 I 0 405 3 0 2 M 44 132 G 2 0 M 68 204 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1692074 1696254 985 + . gene_id 2 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1692074 1692268 . + . KQ414915.1 exonerate:protein2genome:local exon 1692074 1692268 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1692269 1692270 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1692269 1694000 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1693999 1694000 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694001 1694253 . + . KQ414915.1 exonerate:protein2genome:local exon 1694001 1694253 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694254 1694255 . + . intron_id 2 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1694254 1694353 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1694352 1694353 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694354 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694354 1694457 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 5 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 5 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 4 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696254 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696254 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1692074 1696254 985 + . alignment_id 2 ; Query gi|350425964|ref|XP_003494289.1| ; Align 1692074 1 195 ; Align 1694001 66 252 ; Align 1694356 151 102 ; Align 1694867 185 132 ; Align 1694999 231 204 ; Align 1695618 299 276 ; Align 1696213 391 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 696 Query range: 150 -> 406 Target range: 1707001 -> 1709243 151 : AsnIleGlyArgAsnGluSerAspArgValLeuProPheAsnMetTrpIleAspLe : 169 !::||||||:::|||||||||||||||:!!||| ! !!|||.!.|||||||||!! SerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAspPh 1707002 : AgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGACTT : 1707056 170 : uProLeuThrValThrProTyrTyrGluIleIlePheValLeuGln >>>> Tar : 185 !||| !|||:!!||||||||||||||||||:!!|||..!! !||| eProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707057 : TCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt........ : 1707106 186 : get Intron 1 >>>> ValLeuSerLeuTyrHisIleGlyIleSerTyrPheC : 197 276 bp |||!!!! !:!! :!!:!! !!|||||||||.!!| ++ValPheIleValMetTyrValCysIleSerTyrLeuC 1707107 : .................agGTTTTTATCGTAATGTACGTTTGCATAAGCTACCTTT : 1707416 198 : ysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGlnPheArgVal : 215 ||.!!|||||||||||||||!!:!!:|||||||||..!||| !|||||||||:!! ysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIle 1707417 : GTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATA : 1707470 216 : LeuGlnTyrArgIleAlaAsnMetProAspLeuMetAspLysValLysGlnSerGl : 234 ||||||||||||:!::!!|||:!! !! ! !! !!:::: ::: .. LeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAspLysIleSe 1707471 : TTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttc : 1707527 235 : yAspLysIleLeuAsnThrGlySerSerCysLeuAlaAsnGluCysTyrSerIleP : 253 . ||| ! !::!!.!..!..!..!||| |||:!!! | rLysLysThrProSerAsnSerAspGluCys---------------TyrAlaLysP 1707528 : gaaaaaaacaCCGTCCAATTCGGACGAATGC---------------TACGCTAAGT : 1707569 254 : heLysLysTyrIleArgGlnHisGlnAlaLeuIleAlaTyrCysGlyLysLeuGlu : 271 |||||!!.! !|||!:!||||||||||||||||||! !||||||..!:!!|||:!! heLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGln 1707570 : TCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAA : 1707623 272 : GluValPheSerLeuIleIleLeuGluGlnValLeuMetPheSerLeuLeuIleCy : 290 |||||||||.!!|||.!!:!:|||! !|||||||||:!:||||||||||||!!:|| GluValPheGlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCy 1707624 : GAGGTGTTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTG : 1707680 291 : sLeuAspGlyTyrGlnValLeuMet >>>> Target Intron 2 >>>> Al : 299 ||||||||||||| :!!:!!||| 457 bp ! sLeuAspGlyTyr---LeuValMet++ ++Gl 1707681 : CCTCGATGGATAT---TTGGTGATGgt.........................agGA : 1708161 300 : aAsnAlaSerThrSerIleArgValIlePheIleCysHisIleLeuAlaCysLeuC : 318 !:!!.!! !!! !! ! |||:!!! !|||:!:! !|||:!! !!.!||||||| uAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuC 1708162 : AGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGT : 1708218 319 : ysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSerAlaSer : 336 |||||||||||||||||||||||||||||||||||:!:|||||||||||| !!:! ysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsn 1708219 : GCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAAC : 1708272 337 : IleAlaThrAlaAlaTyrLysGlyProTrpLeuIleLeuProMetSerThrSerGl : 355 :!:|||!.!||| !||| ! !! !!|||:!! !|||||||||..!! !||||| ValAlaAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGl 1708273 : GTGGCCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGG : 1708329 356 : yArgMetMetArgLysAspLeuThrLeuIleIleLeuArgSerHisIleProCysC : 374 |||||||:!!|||||||||||||||!!!:!!||| !||||||...:!!||||||| yArgMetLeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCysC 1708330 : GCGAATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCT : 1708386 375 : ysLeuThrGlyLysGlyPhePheValValSerLeuGluThrTyrThrSer >>>> : 391 ||||||||!.! ||||||||| !|||||||||||||||||||||||| ysLeuThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708387 : GTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt.... : 1708439 392 : Target Intron 3 >>>> ValLeuSerThrAlaAlaSerTyrPheThrLeu : 401 759 bp :!!|||||||||||||||||||||||||||||| ++IleLeuSerThrAlaAlaSerTyrPheThrLeu 1708440 : .....................agATTTTAAGTACCGCAGCGTCATACTTCACACTG : 1709226 402 : LeuArgGlnArgGlu : 406 ||||||:!!!:!||| LeuArgLysGlnGlu 1709227 : CTACGAAAACAAGAA : 1709243 vulgar: gi|350425964|ref|XP_003494289.1| 150 406 . KQ414915.1 1707001 1709243 + 696 M 34 102 5 0 2 I 0 272 3 0 2 M 60 180 G 5 0 M 45 135 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707002 1709243 696 + . gene_id 3 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1707002 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707002 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 6 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709243 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709243 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1707002 1709243 696 + . alignment_id 3 ; Query gi|350425964|ref|XP_003494289.1| ; Align 1707002 151 102 ; Align 1707380 185 180 ; Align 1707560 250 135 ; Align 1707695 296 9 ; Align 1708161 299 276 ; Align 1709196 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 415 Query range: 147 -> 303 Target range: 1699025 -> 1699986 148 : LeuValAlaAsnIleGlyArgAsnGluSerAspArgValLeuProPheAsnMetTr : 166 :!!:!!||||||||||||||||||...||||||||||||||||||||||||||||| IleLeuAlaAsnIleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTr 1699026 : ATTTTAgcaaatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTG : 1699080 167 : pIleAspLeuProLeuThrValThrProTyrTyr{Gl} >>>> Target Intr : 178 |:!!||||||||||||:!!|||:!!||| |||{||} 499 bp pValAspLeuProLeuSerValSerProThrTyr{Gl}-- 1699081 : GGTTGATTTGCCGCTGTCTGTGTCACCAACGTAC{GA}aa................ : 1699120 179 : on 1 >>>> {u}IleIlePheValLeuGlnValLeuSerLeuTyrHisIleGly : 192 {|} !.!! ! !! !|||||||||||||||||||||:!!||| ++{u}AspPheValPheAlaGlnValLeuSerLeuTyrHisValGly 1699121 : .........ag{A}GATTTTGTGTTTGCACAGGTTCTGTCTTTGTACCACGTTGGT : 1699657 193 : IleSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGl : 211 :!!!!!|||.!!||||||||||||.!!||||||:!:||||||||||||!.!||| ValCysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaTh 1699658 : GTATGTTACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTAC : 1699714 212 : yGlnPheArgValLeuGlnTyrArgIleAlaAsnMetProAspLeuMetAspLysV : 230 !|||||||||:!!||||||||||||:!!:!!|||:!! !||| !!. rGlnPheArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAsp------ThrAsnA 1699715 : TCAATTTCGTATACTGCAATACAGGTTATCGAACTTGGGTGAT------ACGAACA : 1699765 231 : alLysGlnSerGlyAspLysIleLeuAsnThrGlySerSerCysLeuAlaAsnGlu : 248 !|||||| !! !|||!!. !! !!:!.!!!.! !||| !!!!!|||.!..!. rgLysGlnValAspAspAsnGluSerSerAlaAlaLeuSerArgPheAlaGluAsn 1699766 : GGAAGCAAGTAGATGACAATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAAC : 1699819 249 : CysTyrSerIlePheLysLysTyrIleArgGlnHisGlnAlaLeuIleAlaTyrCy : 267 ||||||!.! ||||||!!.! !:!!|||||||||||| !! !|||.!!||||| CysTyrLysAlaPheLysAsnCysValArgGlnHisGlnAsnHisIleThrTyrCy 1699820 : TGTTATAAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCATATCACGTACTG : 1699876 268 : sGlyLysLeuGluGluValPheSerLeuIleIleLeuGluGlnValLeuMetPheS : 286 | !!:!|||.!.|||:!!|||!!!:!!|||:!!|||! !!!.:!!|||:!:|||| sHisArgLeuAsnGluIlePheThrValIleValLeuGlyHisIleLeuValPheS 1699877 : TCACAGATTGAACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCA : 1699933 287 : erLeuLeuIleCysLeuAspGlyTyrGlnValLeuMetAlaAsnAlaSerThr : 303 |||||||||||||||||! !|||!:!|||||||||:!:! !||| !! !||| erLeuLeuIleCysLeuValGlyPheGlnValLeuValGluAsnIleIleThr 1699934 : GCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTCGTAGAAAACATCATCACC : 1699986 vulgar: gi|350425964|ref|XP_003494289.1| 147 303 . KQ414915.1 1699025 1699986 + 415 M 30 90 S 0 2 5 0 2 I 0 495 3 0 2 S 1 1 M 47 141 G 2 0 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699026 1699986 415 + . gene_id 4 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1699026 1699117 . + . KQ414915.1 exonerate:protein2genome:local exon 1699026 1699117 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699118 1699119 . + . intron_id 1 ; splice_site "AA" KQ414915.1 exonerate:protein2genome:local intron 1699118 1699616 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699615 1699616 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699617 1699986 . + . KQ414915.1 exonerate:protein2genome:local exon 1699617 1699986 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local similarity 1699026 1699986 415 + . alignment_id 4 ; Query gi|350425964|ref|XP_003494289.1| ; Align 1699026 148 90 ; Align 1699618 179 141 ; Align 1699759 228 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 379 Query range: 238 -> 405 Target range: 1688472 -> 1690082 239 : AsnThrGlySerSerCysLeuAlaAsnGluCysTyrSerIlePheLysLysTyrIl : 257 ...|||..!! !!!! ! !.!!|||:!!||||||!!!! .!.! ! ! ! !|| ArgThrAsnMetThrGluTyrThrAsnLysCysTyrThrLysLeuIleAspCysIl 1688473 : CGAACGAACATGACCGAATACACGAACAAATGTTACACCAAGCTGATAGATTGCAT : 1688527 258 : eArgGlnHisGlnAlaLeuIleAlaTyrCysGlyLysLeuGluGluValPheSerL : 276 |!:!.!.||||||:!!||||||! !!:!|||! !|||||||||.!.|||!:!!!!| eLysAsnHisGlnSerLeuIleGluPheCysValLysLeuGluAsnValTyrThrL 1688528 : CAAAAATCATCAGTCGTTGATCGAGTTCTGCGTGAAACTCGAGAACGTGTACACGT : 1688584 277 : euIleIleLeuGluGlnValLeuMetPheSerLeuLeuIleCysLeuAspGlyTyr : 294 ||! !||||||! !!.:!!:!!:!:||||||||||||!!:|||!!!||| !||| euThrIleLeuGlyHisIleValValPheSerLeuLeuMetCysPheAspThrTyr 1688585 : TGACTATACTCGGCCACATAGTGGTCTTCAGCTTGTTGATGTGCTTCGACACGTAC : 1688638 295 : GlnValLeuMet >>>> Target Intron 1 >>>> AlaAsnAlaSerThr : 303 :!!|||:!!:!! 816 bp |||!!.!.! !!||| GluValValLeu++ ++AlaLysValProThr 1688639 : GAGGTAGTTCTGgt.........................agGCAAAGGTACCTACC : 1689481 304 : SerIleArgValIlePheIleCysHisIleLeuAlaCysLeuCysGlnLeuLeuMe : 322 !!!! |||:!!||||||:!!! !|||!!::!!!.! !!!!! !!..::::::.. ThrThrArgLeuIlePheLeuPheHisMetIleGlySerPheIleHisIleIlePh 1689482 : ACGACGCGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCacataatttt : 1689538 323 : tPheThrTyrSerCysAspCysIleIleArgGluSerAlaSerIleAlaThrAlaA : 341 .|||||||||||||||! ! !!:!:|||..!|||||| !..!||||||||||||. ePheThrTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleAlaThrAlaT 1689539 : cttcacgtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCAACAGCAA : 1689595 342 : laTyrLysGlyProTrpLeuIleLeuProMetSerThrSerGlyArgMetMetArg : 359 !!||| !||| !||| !:!!|||||||||!:!! ! !|||!:!|||!!:||| hrTyrAlaGlyMetTrpThrValLeuProMetAsnLysValGlyLysMetIleArg 1689596 : CGTATGCAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAATGATACGA : 1689649 360 : LysAspLeuThrLeuIleIleLeuArgSerHisIleProCysCysLeuThrGlyLy : 378 !:!!:!!! !|||!!:! !:!!|||||| !|||||||||:!!|||!.! GlyAsnMetLysLeuMetThrValArgSerLeuGlnProCysCysIleThrAlaGl 1689650 : GGAAATATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAACTGCTGG : 1689706 379 : sGlyPhePheValValSerLeuGluThrTyrThrSer >>>> Target Intro : 391 ||||||||| !|||||||||:!!||| !|||:!! 293 bp yGlyPhePheProValSerLeuLysThrAlaThrAla++ 1689707 : TGGATTCTTTCCTGTCTCCTTGAAAACTGCTACCGCGgt................. : 1689747 392 : n 2 >>>> ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgGlnArg : 405 :!!:!!|||:!!.!! !|||||||||||||||:!!|||:!!||| ++LeuMetSerSerThrMetSerTyrPheThrLeuMetArgGluArg 1689748 : ........agCTAATGAGTTCCACAATGTCGTATTTCACGCTCATGAGAGAGAGA : 1690082 vulgar: gi|350425964|ref|XP_003494289.1| 238 405 . KQ414915.1 1688472 1690082 + 379 M 60 180 5 0 2 I 0 812 3 0 2 M 92 276 5 0 2 I 0 289 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688473 1690082 379 + . gene_id 5 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688473 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688473 1688652 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690082 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690082 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688473 1690082 379 + . alignment_id 5 ; Query gi|350425964|ref|XP_003494289.1| ; Align 1688473 239 180 ; Align 1689469 299 276 ; Align 1690038 391 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 315 Query range: 183 -> 298 Target range: 1702013 -> 1702352 184 : GlnValLeuSerLeuTyrHisIleGlyIleSerTyrPheCysPheAspAsnPheLe : 202 |||||||||||||||||||||:!!|||:!!!!!|||.!!||||||||||||.!!|| GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 203 : uCysIleMetAsnLeuHisValAlaGlyGlnPheArgValLeuGlnTyrArgIleA : 221 ||||:!:||||||||||||!.!||| !|||||||||:!!||||||||||||:!!: uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 222 : laAsnMetProAspLeuMetAspLysValLysGlnSerGlyAspLysIleLeuAsn : 239 !!|||:!! !||| !!. !|||||| !! !|||!!. !! !!:! erAsnLeuGlyAsp------ThrAsnArgLysGlnValAspAspAsnGluSerSer 1702126 : CGAACTTGGGTGAT------ACGAACAGGAAGCAAGTAGATGACAATGAATCCAGC : 1702173 240 : ThrGlySerSerCysLeuAlaAsnGluCysTyrSerIlePheLysLysTyrIleAr : 258 .!!!.! !||| !!!!!|||.!..!.||||||!.! ||||||!!.! !:!!|| AlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValAr 1702174 : GCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACG : 1702230 259 : gGlnHisGlnAlaLeuIleAlaTyrCysGlyLysLeuGluGluValPheSerLeuI : 277 |||||||||| !! !|||.!!|||||| !!:!|||.!.|||:!!|||!!!:!!| gGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValI 1702231 : ACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCA : 1702287 278 : leIleLeuGluGlnValLeuMetPheSerLeuLeuIleCysLeuAspGlyTyrGln : 295 ||:!!|||! !!!.:!!|||:!:|||||||||||||||||||||! !|||!:!||| leValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGln 1702288 : TTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAA : 1702341 296 : ValLeuMet : 298 ||||||:!! ValLeuVal 1702342 : GTGCTCGTG : 1702352 vulgar: gi|350425964|ref|XP_003494289.1| 183 298 . KQ414915.1 1702013 1702352 + 315 M 42 126 G 2 0 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1702352 315 + . gene_id 6 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702014 1702352 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702352 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1702352 315 + . alignment_id 6 ; Query gi|350425964|ref|XP_003494289.1| ; Align 1702014 184 126 ; Align 1702140 228 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 272 Query range: 305 -> 397 Target range: 1702980 -> 1703256 306 : ArgValIlePheIleCysHisIleLeuAlaCysLeuCysGlnLeuLeuMetPheTh : 324 |||:!!! !|||:!!! !||||||:!!!.! !!|||||||||||||||:!:||||| ArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLeuLeuPheTh 1702981 : CGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATTGCTATTTAC : 1703035 325 : rTyrSerCysAspCysIleIleArgGluSerAlaSerIleAlaThrAlaAlaTyrL : 343 ||||||||||||| !!:!:|||..!||||||.!!!:!|||!.!|||||| !||| rTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaIleTyrL 1703036 : CTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGATATACC : 1703092 344 : ysGlyProTrpLeuIleLeuProMetSerThrSerGlyArgMetMetArgLysAsp : 361 |||||||||:!! !|||||||||..!! !:!!||||||! !:!!|||!:!||| euGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArgArgAsp 1703093 : TCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGAAGAGAC : 1703146 362 : LeuThrLeuIleIleLeuArgSerHisIleProCysCysLeuThrGlyLysGlyPh : 380 ||||||:!!:!!|||:!!||||||...! ! !! !!|||||||||!.!!..||||| LeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSerGlyPh 1703147 : TTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAGCGGATT : 1703203 381 : ePheValValSerLeuGluThrTyrThrSerValLeuSerThrAlaAlaSer : 397 |||| !|||||||||||||||! !|||!!!|||!!!!:! !:!! !||| ePheProValSerLeuGluThrCysThrThrValPheAsnPheSerPheSer 1703204 : CTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATTTCTCATTCTCT : 1703256 vulgar: gi|350425964|ref|XP_003494289.1| 305 397 . KQ414915.1 1702980 1703256 + 272 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702981 1703256 272 + . gene_id 7 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702981 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1702981 1703256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702981 1703256 272 + . alignment_id 7 ; Query gi|350425964|ref|XP_003494289.1| ; Align 1702981 306 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 212 Query range: 150 -> 220 Target range: 1681725 -> 1682058 151 : AsnIleGlyArgAsnGluSerAspArgValLeuProPheAsnMetTrpIle<->As : 168 |||||||||!:!!:!!!:..!!!:|||:!!||||||||| .!. ! :!: :! AsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAs 1681726 : AACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAA : 1681780 169 : pLeuProLeuThrValThrProTyrTyrGluIleIlePheValLeuGln >>>> : 185 !|||||| !:!!:!!||||||||||||||||||:::||||||:!!:!! nLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681781 : CTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt..... : 1681833 186 : Target Intron 1 >>>> ValLeuSerLeuTyrHisIleGlyIleSerTyrP : 196 120 bp ..!||||||:!! ||| ||||||!!!!:!! ++ThrLeuSerValValHisSerGlyIleCysPheC 1681834 : ....................agACATTATCTGTGGTGCATTCGGGAATTTGTTTCT : 1681984 197 : heCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGlnPheArg : 214 !||||||||||||||||||||||||:!!!:!:!!||||||!.!|||||||||!:! ysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLys 1681985 : GTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAG : 1682038 215 : ValLeuGlnTyrArgIle : 220 :!!|||||| !!!:!:!! IleLeuGlnAsnLysLeu 1682039 : ATTTTACAAAACAAACTC : 1682058 vulgar: gi|350425964|ref|XP_003494289.1| 150 220 . KQ414915.1 1681725 1682058 + 212 M 17 51 G 0 3 M 17 51 5 0 2 I 0 116 3 0 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681726 1682058 212 + . gene_id 8 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681726 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681726 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682058 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682058 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681726 1682058 212 + . alignment_id 8 ; Query gi|350425964|ref|XP_003494289.1| ; Align 1681726 151 51 ; Align 1681780 168 51 ; Align 1681951 185 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 169 Query range: 5 -> 68 Target range: 1697518 -> 1697707 6 : ThrAspAspIleSerValArgLeuThrSerValPheMetLysLeuValGlyLeuTr : 24 ||| ! |||.!!:!!:!! !:!!|||||| !!!!.||||||:!!||||||||||| ThrLysAspPheAlaLeuLeuMetThrSerPheLeuMetLysIleValGlyLeuTr 1697519 : ACCAAAGATTTTGCTCTGTTAATGACGTCGTTTTTAATGAAGATCGTCGGTCTTTG : 1697573 25 : pMetAlaThrGluArgSerGluGlnArgIleArgAsnIleThrValGlyTyrThrL : 43 |:!:|||! !!!:!!!!.!|||:!!|||! |||... !|||:!! !||||||: pLeuAlaLysAspSerLysGluGluArgLysArgArgTyrThrLeuIleTyrThrV 1697574 : GTTAGCGAAAGACAGCAAGGAGGAACGCAAGCGTCGGTACACTTTGATCTATACGG : 1697630 44 : euValAlaIleMetPheAlaMetTrpLeuGlnThrThrAspMetTyrTyrSerTrp : 61 !!|||||||||:!!|||!.!:!!|||:!!||| !! !|||.!.|||||||||||| alValAlaIleLeuPheGlyValTrpValGlnPheArgAspPheTyrTyrSerTrp 1697631 : TGGTCGCGATTTTGTTTGGAGTGTGGGTGCAGTTCAGAGACTTCTATTACTCCTGG : 1697684 62 : GlyAspPheSerAlaCysLeu : 68 !:!!|||.!!!.! !!||| ProAsnPheGlyValSerLeu 1697685 : CCGAATTTTGGCGTGAGTTTG : 1697707 vulgar: gi|350425964|ref|XP_003494289.1| 5 68 . KQ414915.1 1697518 1697707 + 169 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1697519 1697707 169 + . gene_id 9 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1697519 1697707 . + . KQ414915.1 exonerate:protein2genome:local exon 1697519 1697707 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1697519 1697707 169 + . alignment_id 9 ; Query gi|350425964|ref|XP_003494289.1| ; Align 1697519 6 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 252 -> 392 Target range: 1677752 -> 1678746 253 : PheLysLysTyrIleArgGlnHisGlnAlaLeuIleAlaTyrCysGlyLysLeuGl : 271 |||:::||| :!:|||!:!||| ! !||||||! !||| ! !:::|||.. PheGluLysCysLeuArgArgHisTyrLeuLeuIleAspTyrValGluGluLeuAs 1677753 : ttcgagaaatgcTTGCGTCGACACTATTTGCTCATTGACTACGTAGAGgaattgaa : 1677807 272 : uGluValPheSerLeuIleIleLeuGluGlnValLeuMetPheSerLeuLeuIleC : 290 ....:::|||!.!! !! !:!!||| !|||:!!:!!! ! ||||||||||||| nAsnLeuPheLysTyrThrLeuLeuLeuGlnMetMetThrSerSerLeuLeuIleC 1677808 : taatttgttCAAATACACCCTTCTGTTACAGATGATGACCTCGAGTTTGTTAATCT : 1677864 291 : ysLeuAspGlyTyrGlnValLeuMet >>>> Target Intron 1 >>>> A : 299 ||:!!..!||||||:!! !|||:!! 580 bp ysMetSerGlyTyrGluCysLeuVal++ ++T 1677865 : GTATGTCTGGTTACGAATGTTTAGTGgt.........................agT : 1678471 300 : laAsnAlaSerThrSerIleArgValIlePheIleCysHisIleLeuAlaCysLeu : 317 !.!.|||||| ! !! !|||:!!:!!!:!||| :!!!!::!!|||! :!! yrGlnAlaSerLeuLeuLysArgMetValTyrIleMetTyrMetValAlaSerVal 1678472 : ACCAGGCATCCTTGCTAAAACGCATGGTCTACATCATGTACATGGTTGCCTCAGTG : 1678525 318 : CysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSerAlaSe : 336 ! :!!|||! !:!!.!...! !!! ||| :!:! !! !.!.||| !:! SerGluLeuTrpLeuIleValArgThrValAspGluLeuThrThrHisSerLysAl 1678526 : TCAGAATTATGGTTGATAGTCCGAACCGTAGACGAACTGACCACTCATAGCAAAGC : 1678582 337 : rIleAlaThrAlaAlaTyrLysGlyProTrpLeuIleLeuProMetSerThrSerG : 355 !|||!.! !||| !|||.....! !||| !:!:::: ...... aIleGlyAspAlaMetTyrSerSerAspTrpGlyValIle---PheGlyLysLeuG 1678583 : GATCGGCGATGCGATGTATTCCTCGGATTGGGGAGTgatc---tttggaaaattgg : 1678636 356 : lyArgMetMetArgLysAspLeuThrLeuIleIleLeuArgSerHisIleProCys : 373 ::: :::::: |||||| !!!::!!:!!|||||| ||| ! luLysLysLeuLysPheAlaLeuThrThrMetValIleArgSer---IleGluThr 1678637 : agaagaaattaaaatttgcctTGACGACGATGGTTATCAGATCG---ATCGAGACG : 1678687 374 : CysLeuThrGlyLysGlyPhePheValValSerLeuGluThrTyrThrSerValLe : 392 |||! !! ! ! |||||||||!.!|||||| !||||||!:!|||||||||:! CysSerMetLysAlaGlyPhePheAlaValSerSerGluThrPheThrSerValIl 1678688 : TGTTCTATGAAAGCTGGCTTCTTTGCGGTCTCCAGTGAGACGTTTACATCGGTAAT : 1678744 393 : u : 392 ! e 1678745 : T : 1678746 vulgar: gi|350425964|ref|XP_003494289.1| 252 392 . KQ414915.1 1677752 1678746 + 165 M 46 138 5 0 2 I 0 576 3 0 2 M 51 153 G 1 0 M 19 57 G 1 0 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1677753 1678746 165 + . gene_id 10 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1677753 1677890 . + . KQ414915.1 exonerate:protein2genome:local exon 1677753 1677890 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1677891 1677892 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1677891 1678470 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1678469 1678470 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1678471 1678746 . + . KQ414915.1 exonerate:protein2genome:local exon 1678471 1678746 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local similarity 1677753 1678746 165 + . alignment_id 10 ; Query gi|350425964|ref|XP_003494289.1| ; Align 1677753 253 138 ; Align 1678471 299 153 ; Align 1678624 351 57 ; Align 1678681 371 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 149 -> 207 Target range: 1688053 -> 1689994 150 : AlaAsnIleGlyArgAsnGluSerAspArgValLeuProPheAsnMetTrpIleAs : 168 ||||||!!:.!!||||||:!!|||||||||||||||||||||!!.||||||:!!|| AlaAsnMetSerArgAsnLysSerAspArgValLeuProPheLysMetTrpValAs 1688054 : GCAAATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTGGGTCGA : 1688108 169 : pLeuProLeuThrValThrProTyrTyrGluIleIlePheValLeuGlnVal{Le} : 186 |! !||||||:!!! !|||||||||||||||:!:!!:|||..!!!!||||||{! } pTrpProLeuSerAspThrProTyrTyrGluLeuMetPheThrPheGlnVal{Se} 1688109 : TTGGCCGCTATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAGGTA{TC} : 1688162 187 : >>>> Target Intron 1 >>>> {u}SerLeuTyrHisIleGlyIleSer : 194 1767 bp {!} ...::: ... ++ ++{r}PhePhePheAlaGluLeuArgLys 1688163 : gt.........................ag{t}ttttttttcgcggagctacgcaaa : 1689953 195 : TyrPheCysPheAspAsnPheLeuCysIleMetAsnLeu : 207 |||||| ... !..!||||||||||||:!:|||:!! TyrPhe***MetIleArgPheLeuCysIleLeuAsnVal 1689954 : tatttttgaatgatTCGCTTTTTGTGCATCCTTAACGTA : 1689994 vulgar: gi|350425964|ref|XP_003494289.1| 149 207 . KQ414915.1 1688053 1689994 + 143 M 36 108 S 0 2 5 0 2 I 0 1763 3 0 2 S 1 1 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688054 1689994 143 + . gene_id 11 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688054 1688163 . + . KQ414915.1 exonerate:protein2genome:local exon 1688054 1688163 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688164 1688165 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688164 1689930 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1689929 1689930 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1689931 1689994 . + . KQ414915.1 exonerate:protein2genome:local exon 1689931 1689994 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688054 1689994 143 + . alignment_id 11 ; Query gi|350425964|ref|XP_003494289.1| ; Align 1688054 150 108 ; Align 1689932 187 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 0 -> 68 Target range: 1685751 -> 1685955 1 : MetSerPheIleLysThrAspAspIleSerValArgLeuThrSerValPheMetLy : 19 |||..! ! !||| ! |||||||||:!!!:: ...:::|| MetGlnAlaThrLysTyrArgAspIleSerLeuLysCysGlyIlePheLeuLeuLy 1685752 : ATGCAGGCGACAAAATACAGGGATATTTCCCTCAAgtgtggaatttttcttttgaa : 1685806 20 : sLeuValGlyLeuTrpMetAlaThrGluArgSerGluGlnArgIleArgAsnIleT : 38 |||||||||||||||||||:!!! !.!.!!! !|||:!!||| !|||!...!!| sLeuValGlyLeuTrpMetSerMetAsnSerValGluGluArgArgArgArgPheT 1685807 : attagtCGGCCTCTGGATGTCCATGAACAGCGTCGAGGAGCGTCGAAGGAGGTTCA : 1685863 39 : hrValGlyTyrThrLeuValAlaIleMetPheAlaMetTrpLeuGlnThrThrAsp : 56 ||:!! ! :!!:!! !!|||:!! !:!!.!:!:!:::!!.!...!!.!||| hrLeuPheGlySerValPheAlaLeuSerTyrGlyValTyrValAsnValAsnAsp 1685864 : CGTTGTTCGGATCAGTTTTCGCCCTTTCTTACGGCGTTTACGTGAACGTAAACGAT : 1685917 57 : MetTyrTyrSerTrpGlyAspPheSerAlaCysLeu : 68 !!: !:!!|||!::! !|||.!.|||!.! !!:!! IleLeuHisSerPheAspAspLeuSerValSerMet 1685918 : ATTCTTCACAGCTTCGATGATCTGAGCGTGAGTATG : 1685955 vulgar: gi|350425964|ref|XP_003494289.1| 0 68 . KQ414915.1 1685751 1685955 + 102 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1685752 1685955 102 + . gene_id 12 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1685752 1685955 . + . KQ414915.1 exonerate:protein2genome:local exon 1685752 1685955 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1685752 1685955 102 + . alignment_id 12 ; Query gi|350425964|ref|XP_003494289.1| ; Align 1685752 1 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 1295 Query range: 0 -> 399 Target range: 1685751 -> 1690091 1 : MetHisThrThrArgTyrThrAspIleSerIleThrLeuSerGlnPheLeuLeuLy : 19 |||!!..!!|||!:!|||! !|||||||||:!!! ... ||||||||||| MetGlnAlaThrLysTyrArgAspIleSerLeuLysCysGlyIlePheLeuLeuLy 1685752 : ATGCAGGCGACAAAATACAGGGATATTTCCCTCAAgtgtggaatttttcttttgaa : 1685806 20 : sLeuAlaGlyValTrpMetThrValAsnAsnAlaGluGluArgArgArgArgLeuT : 38 ||||..!|||:!!||||||:!!:!!|||!:!!.!||||||||||||||||||!!!| sLeuValGlyLeuTrpMetSerMetAsnSerValGluGluArgArgArgArgPheT 1685807 : attagtCGGCCTCTGGATGTCCATGAACAGCGTCGAGGAGCGTCGAAGGAGGTTCA : 1685863 39 : hrMetAlaPheThrAlaValIleHisValTyrGlyLeuTyrLeuAsnLeuGlyAsp : 56 ||:!! ! :!!!.! !! !! ! !||||||:!!|||:!!|||:!!..!||| hrLeuPheGlySerValPheAlaLeuSerTyrGlyValTyrValAsnValAsnAsp 1685864 : CGTTGTTCGGATCAGTTTTCGCCCTTTCTTACGGCGTTTACGTGAACGTAAACGAT : 1685917 57 : AlaTyrTyrThrTrpAsnAspLeuSer >>>> Target Intron 1 >>>> : 66 ! !:!!!:!!:::!!||||||||| 1431 bp IleLeuHisSerPheAspAspLeuSer++ ++ 1685918 : ATTCTTCACAGCTTCGATGATCTGAGCgt.........................ag : 1687376 67 : HisCysThrPheLeuLeuSerAsnThrLeuCysIleIleLeuAlaMetPheLysLe : 84 ||||||! !|||||| !!!!|||||||||||||||:!!||||||!!:||||||:! HisCysIlePheLeuThrCysAsnThrLeuCysIleLeuLeuAlaIlePheLysIl 1687377 : cATTGCATCTTTCTGACTTGCAACACACTGTGCATTCTTCTGGCGATATTTAAGAT : 1687432 85 : uLeuIleLeuAsnPheArgArgThrGluPheLysAspLeuValLeuPheAlaGlnG : 103 !!!!||||||!:! !!.!|||||||||||||||!!::!!||||||!:!||||||: ePheIleLeuSerAsnHisArgThrGluPheLysGluIleValLeuTyrAlaGlnL 1687433 : TTTCATACTAAGCAATCACAGAACGGAATTCAAGGAGATAGTCTTGTACGCGCAGA : 1687489 104 : lnAsnPheTrpHisPheLysTyrAspHisAspGluLysIleLeuPheMetLysCys : 121 !!:!!||||||||| !!!.|||..! ! !!:|||!:!:!:|||!:! ! ||| ysHisPheTrpHisAspAsnTyrSerLysGluGluArgValLeuTyrGlyAspCys 1687490 : AGCATTTTTGGCATGATAATTACAGCAAAGAGGAGAGGGTGCTTTATGGAGATTGC : 1687543 122 : ArgLysLeuCysLysLeuTrpThrIleThrAlaCysSerPheThrGlnAlaSerLe : 140 !:!!:!!!!||||||||||||..!||| ! !|||! !.!!|||||||||||||| GlnArgPheCysLysLeuTrpValIleLeuIleCysPheLeuThrGlnAlaSerLe 1687544 : CAGAGGTTCTGCAAACTATGGGTCATACTAATATGTTTCCTTACGCAAGCCTCTTT : 1687600 141 : uAlaPheTyrIleIleThrProIleCys{A} >>>> Target Intron 2 >> : 150 |!.!||||||.!!:!!||||||:!! !{|} 424 bp uValPheTyrPheValThrProLeuThr{A}++ 1687601 : AGTGTTCTACTTTGTCACACCACTCACT{G}gt....................... : 1687633 151 : >> {la}AsnIleGlyLysAsnLysSerAspArgValLeuProPheLysMetTrp : 166 {||}|||!!:.!!::!|||||||||||||||||||||||||||||||||||| ++{la}AsnMetSerArgAsnLysSerAspArgValLeuProPheLysMetTrp 1687634 : ..ag{CA}AATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTGG : 1688102 167 : ValAspLeuProLeuSerValThrProTyrTyrGluIleMetPheValIleGln : 185 ||||||! !|||||||||! !|||||||||||||||:!:||||||..!.!!||| ValAspTrpProLeuSerAspThrProTyrTyrGluLeuMetPheThrPheGln++ 1688103 : GTCGATTGGCCGCTATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAGgt : 1688159 186 : >>>> Target Intron 3 >>>> LeuAlaThrValGlnGlnIleGlyValTh : 194 179 bp ! ! !||| ! |||||||||!.!.! ++AlaLeuCysValTyrGlnIleGlyAlaAl 1688160 : .........................agGCGCTGTGCGTGTATCAAATCGGCGCCGC : 1688365 195 : rTyrLeuCysAsnAspAsnPheLeuCysIleLeuAsnMetHisValIleCysGlnP : 213 !|||:!!|||::!|||!..|||!!!|||!!:||||||||||||||||||||||||| aTyrIleCysSerAspThrPhePheCysMetLeuAsnMetHisValIleCysGlnP 1688366 : CTATATCTGCTCCGACACGTTTTTCTGCATGCTGAACATGCACGTGATCTGCCAGT : 1688422 214 : heArgMetLeuHisAsnArgLeuLeuAsnLeuTrpLysIleIleAspGlnLysThr : 231 |||||!!:|||:!! !!||||||||||||:!!||| !:!!||||||:!!::!||| heArgIleLeuAsnTyrArgLeuLeuAsnMetTrpProValIleAspGluArgThr 1688423 : TCCGTATACTAAATTACAGACTGTTGAACATGTGGCCGGTCATCGACGAGCGAACG : 1688476 232 : AspLysIleAspTyrAlaAspLysCysTyrIleAlaLeuLysLysCysIleArgGl : 250 :!!! !! !!!:|||.!!:!!|||||||||! ! !|||! ! ! ||||||!:!.! AsnMetThrGluTyrThrAsnLysCysTyrThrLysLeuIleAspCysIleLysAs 1688477 : AACATGACCGAATACACGAACAAATGTTACACCAAGCTGATAGATTGCATCAAAAA : 1688533 251 : nHisGlnSerLeuIleLysPheCysGluLysLeuGluTyrValAsnThrPheProI : 269 .|||||||||||||||:!!||||||! !||||||||| !!||| !!|||!!. !!| nHisGlnSerLeuIleGluPheCysValLysLeuGluAsnValTyrThrLeuThrI 1688534 : TCATCAGTCGTTGATCGAGTTCTGCGTGAAACTCGAGAACGTGTACACGTTGACTA : 1688590 270 : lePheGlyHisValValValPheSerLeuLeuMetCysPheAspThrTyrGluIle : 287 ||.!!||||||:!!|||||||||||||||||||||||||||||||||||||||:!! leLeuGlyHisIleValValPheSerLeuLeuMetCysPheAspThrTyrGluVal 1688591 : TACTCGGCCACATAGTGGTCTTCAGCTTGTTGATGTGCTTCGACACGTACGAGGTA : 1688644 288 : LeuLeu >>>> Target Intron 4 >>>> AlaAsnValSerThrGlyThr : 296 :!!||| 816 bp |||!!.||| !!||| !||| ValLeu++ ++AlaLysValProThrThrThr 1688645 : GTTCTGgt.........................agGCAAAGGTACCTACCACGACG : 1689487 297 : ArgLeuIlePheValPheHisMetValGlySerPheIleHisIleIlePhePheTh : 315 ||||||||||||:!!|||||||||:!!||||||||||||||||||||||||||||| ArgLeuIlePheLeuPheHisMetIleGlySerPheIleHisIleIlePhePheTh 1689488 : CGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCacataattttcttcac : 1689544 316 : rTyrThrCysHisGlyLeuIleGluGluSerSerAsnIleSerLeuAlaThrTyrS : 334 ||||!:!||| !||||||||||||||||||! !:!!|||:!! !|||||||||: rTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleAlaThrAlaThrTyrA 1689545 : gtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCAACAGCAACGTATG : 1689601 335 : erGlyTrpTrpThrIleLeuProMetThrGluThrGlyArgMetLeuArgGluAsp : 352 !!||| !||||||:!!|||||||||!.!:!!..!|||!:!|||:!!|||! !:!! laGlyMetTrpThrValLeuProMetAsnLysValGlyLysMetIleArgGlyAsn 1689602 : CAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAATGATACGAGGAAAT : 1689655 353 : ValLysValMetMetMetLysSerMetArgProCysTyrLeuSerAlaGlyGlyPh : 371 :!!|||:!!|||! :!:!:!|||:!!!:!||||||! !:!!!!!||||||||||| MetLysLeuMetThrValArgSerLeuGlnProCysCysIleThrAlaGlyGlyPh 1689656 : ATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAACTGCTGGTGGATT : 1689712 372 : ePheProIleSerLeuGluThrSerThrAla >>>> Target Intron 5 >> : 382 |||||||:!!||||||:!!|||:!!|||||| 293 bp ePheProValSerLeuLysThrAlaThrAla++ 1689713 : CTTTCCTGTCTCCTTGAAAACTGCTACCGCGgt....................... : 1689747 383 : >> LeuMetSerThrThrMetSerTyrPheThrLeuMetArgGluSerSerValL : 399 |||||||||:!!||||||||||||||||||||||||||||||!!!|||!.!: ++LeuMetSerSerThrMetSerTyrPheThrLeuMetArgGluArgSerAlaG 1689748 : ..agCTAATGAGTTCCACAATGTCGTATTTCACGCTCATGAGAGAGAGATCGGCTG : 1690089 400 : ys : 399 !! lu 1690090 : AA : 1690091 vulgar: gi|350425896|ref|XP_003494267.1| 0 399 . KQ414915.1 1685751 1690091 + 1295 M 65 195 5 0 2 I 0 1427 3 0 2 M 84 252 S 0 1 5 0 2 I 0 420 3 0 2 S 1 2 M 34 102 5 0 2 I 0 175 3 0 2 M 105 315 5 0 2 I 0 812 3 0 2 M 92 276 5 0 2 I 0 289 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1685752 1690091 1295 + . gene_id 1 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1685752 1685946 . + . KQ414915.1 exonerate:protein2genome:local exon 1685752 1685946 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1685947 1685948 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1685947 1687377 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1687376 1687377 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1687378 1687630 . + . KQ414915.1 exonerate:protein2genome:local exon 1687378 1687630 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1687631 1687632 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1687631 1688054 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1688053 1688054 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1688055 1688158 . + . KQ414915.1 exonerate:protein2genome:local exon 1688055 1688158 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688159 1688160 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688159 1688337 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1688336 1688337 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1688338 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688338 1688652 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 5 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 5 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 4 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690091 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690091 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1685752 1690091 1295 + . alignment_id 1 ; Query gi|350425896|ref|XP_003494267.1| ; Align 1685752 1 195 ; Align 1687378 66 252 ; Align 1688057 151 102 ; Align 1688338 185 315 ; Align 1689469 290 276 ; Align 1690038 382 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 419 Query range: 7 -> 185 Target range: 1697524 -> 1699139 8 : AspIleSerIleThrLeuSerGlnPheLeuLeuLysLeuAlaGlyValTrpMetTh : 26 |||.!!:!!:!: !:!!!!!..!||||||:!!|||:!!!.!|||:!!|||:!:.! AspPheAlaLeuLeuMetThrSerPheLeuMetLysIleValGlyLeuTrpLeuAl 1697525 : GATTTTGCTCTGTTAATGACGTCGTTTTTAATGAAGATCGTCGGTCTTTGGTTAGC : 1697579 27 : rValAsnAsnAlaGluGluArgArgArgArgLeuThrMetAlaPheThrAlaValI : 45 ! !:!!!:! !|||||||||!:!||||||! !|||:!! !!:!|||!.!||| aLysAspSerLysGluGluArgLysArgArgTyrThrLeuIleTyrThrValValA 1697580 : GAAAGACAGCAAGGAGGAACGCAAGCGTCGGTACACTTTGATCTATACGGTGGTCG : 1697636 46 : leHisValTyrGlyLeuTyrLeuAsnLeuGlyAspAlaTyrTyrThrTrpAsnAsp : 63 !:!!!:!|||:!!!:::!!.!.!!! !!||| !||||||:!!||| :!! laIleLeuPheGlyValTrpValGlnPheArgAspPheTyrTyrSerTrpProAsn 1697637 : CGATTTTGTTTGGAGTGTGGGTGCAGTTCAGAGACTTCTATTACTCCTGGCCGAAT : 1697690 64 : LeuSer >>>> Target Intron 1 >>>> HisCysThrPheLeuLeuSer : 72 !!!.!! 849 bp !!|||.!!!:! ! !!!! PheGly++ ++AspCysAlaTyrThrAlaCys 1697691 : TTTGGCgt.........................aggACTGTGCTTACACCGCTTGT : 1698566 73 : AsnThrLeuCysIleIleLeuAlaMetPheLysLeuLeuIleLeuAsnPheArgAr : 91 |||! !||||||:!:|||:!!!.!:!!!!.||||||!!!:!!:!! !.!.!.!|| AsnIleLeuCysLeuIleMetValLeuLeuLysLeuPheValValPheIleHisAr 1698567 : AACATTCTCTGCCTGATTATGGTACTGTTAAAGCTGTTCGTTGTATTCATACACAG : 1698623 92 : gThrGluPheLysAspLeuValLeuPheAlaGlnGlnAsnPheTrpHisPheLysT : 110 |! !||||||! !!:|||::::::::: :::||||||||||||.!!!!.| gLysGluPheIleGluLeuLeuValTyrMetTyrLysAsnPheTrpHisLeuAsnT 1698624 : GAAAGAATTCATCGAACTgcttgtatatatgtacaaaaatttttggcACCTCAATT : 1698680 111 : yrAspHisAspGluLysIleLeuPheMetLysCysArgLysLeuCysLysLeuTrp : 128 ||||| !:!!||| !:!!|||.!.... ! ||||||!:!:!! !!! :!!!! yrAspCysAsnGluLeuLeuLeuLeuGlnAspCysArgArgIleSerThrIleCys 1698681 : ACGATTGCAACGAACTACTACTGCTGCAAGACTGCAGAAGAATTAGCACTATATGT : 1698734 129 : ThrIleThrAlaCysSerPheThrGlnAlaSerLeuAlaPheTyrIleIleThrPr : 147 ! !! ! ! !! !! !.!!|||!.!!!!:!!!.! !|||:!::!!||||| IleThrLeuIleAsnPheCysAlaGlnGlyThrIleValSerTyrValLeuThrPr 1698735 : ATCACGTTGATTAACTTCTGTGCTCAAGGCACAATTGTCAGCTACGTGCTAACACC : 1698791 148 : oIleCys{A} >>>> Target Intron 2 >>>> {la}AsnIleGlyLysA : 155 |||| {|} 232 bp {||}|||||||||:::| oIleIle{A}++ ++{la}AsnIleGlyArgA 1698792 : TATTATA{G}gt.........................ag{ca}aatattggaagaa : 1699047 156 : snLysSerAspArgValLeuProPheLysMetTrpValAspLeuProLeuSerVal : 173 ||!..|||||||||||||||||||||!!.||||||||||||||||||||||||||| snSerSerAspArgValLeuProPheAsnMetTrpValAspLeuProLeuSerVal 1699048 : aCAGTTCCGATAGAGTGCTCCCATTCAACATGTGGGTTGATTTGCCGCTGTCTGTG : 1699101 174 : ThrProTyrTyrGluIleMetPheValIleGlnLeu : 185 :!!||| |||||||||:!!||||||:!!|||:!! SerProThrTyrGluIleValPheValLeuGlnVal 1699102 : TCACCAACGTACGAAATAGTGTTCGTGCTTCAGGTA : 1699139 vulgar: gi|350425896|ref|XP_003494267.1| 7 185 . KQ414915.1 1697524 1699139 + 419 M 58 174 5 0 2 I 0 845 3 0 2 M 84 252 S 0 1 5 0 2 I 0 228 3 0 2 S 1 2 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1697525 1699139 419 + . gene_id 2 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1697525 1697698 . + . KQ414915.1 exonerate:protein2genome:local exon 1697525 1697698 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1697699 1697700 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1697699 1698547 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1698546 1698547 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1698548 1698800 . + . KQ414915.1 exonerate:protein2genome:local exon 1698548 1698800 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1698801 1698802 . + . intron_id 2 ; splice_site "Gt" KQ414915.1 exonerate:protein2genome:local intron 1698801 1699032 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1699031 1699032 . + . intron_id 1 ; splice_site "Ag" KQ414915.1 exonerate:protein2genome:local cds 1699033 1699139 . + . KQ414915.1 exonerate:protein2genome:local exon 1699033 1699139 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1697525 1699139 419 + . alignment_id 2 ; Query gi|350425896|ref|XP_003494267.1| ; Align 1697525 8 174 ; Align 1698548 66 252 ; Align 1699035 151 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 392 Query range: 235 -> 398 Target range: 1702190 -> 1703659 236 : TyrAlaAspLysCysTyrIleAlaLeuLysLysCysIleArgGlnHisGlnSerLe : 254 !:!|||!!:!!.||||||! |||!!!|||!!.|||:!!||||||||||||!:!! PheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHisGlnAsnHi 1702191 : TTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCA : 1702245 255 : uIleLysPheCysGluLysLeuGluTyrValAsnThrPheProIlePheGlyHisV : 273 !|||! !!:!|||.!.!:!|||.!. ! :!! !||| !! !:!!.!!||||||: sIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValLeuGlyHisI 1702246 : TATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTACTCGGACACA : 1702302 274 : alValValPheSerLeuLeuMetCysPheAspThrTyrGluIleLeuLeu >>>> : 290 !!:!!|||||||||||||||!!:|||.!.! ! !!:!:!!:!:|||:!! leLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeuVal++ 1702303 : TACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTCGTGgt.... : 1702355 291 : Target Intron 1 >>>> AlaAsnValSerThrGlyThrArgLeuIlePhe : 300 607 bp .!! !|||!!! !!!.!! !||||||! !||| -+ThrProValThrProAlaArgArgLeuThrPhe 1702356 : .....................ggACACCTGTGACTCCAGCGAGGCGGCTTACTTTC : 1702990 301 : ValPheHisMetValGlySerPheIleHisIleIlePhePheThrTyrThrCysHi : 319 |||||||||!!:|||||||||.!. !!!.:!!:!:.!.|||||||||!:!||| ! ValPheHisIleValGlySerLeuCysGlnLeuLeuLeuPheThrTyrSerCysAs 1702991 : GTATTTCACATAGTCGGTAGTCTATGCCAACTATTGCTATTTACCTATAGCTGCGA : 1703047 320 : sGlyLeuIleGluGluSerSerAsnIleSerLeuAlaThrTyrSerGlyTrpTrpT : 338 !||||||||||||||||||!!!||||||.!! !|||! !||| !||| |||! pGlyLeuIleGluGluSerThrAsnIleGlyThrAlaIleTyrLeuGlyProTrpI 1703048 : CGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGATATACCTCGGGCCTTGGA : 1703104 339 : hrIleLeuProMetThrGluThrGlyArgMetLeuArgGluAspValLysValMet : 356 ! !||||||||| !:!!.!!||||||! !||||||..!|||:!!! !:!!:!: leHisLeuProMetAspLysAlaGlyArgArgLeuArgArgAspLeuThrMetVal 1703105 : TACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGAAGAGACTTGACAATGGTC : 1703158 357 : MetMetLysSerMetArgProCysTyrLeuSerAlaGlyGlyPhePheProIleSe : 375 !!::!:!:!|||! !:! !! !!! !|||!!!|||.!!||||||||||||:!!|| IleValArgSerArgLysSerSerCysLeuThrAlaSerGlyPhePheProValSe 1703159 : ATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAGCGGATTCTTTCCTGTTTC : 1703215 376 : rLeuGluThrSerThrAla >>>> Target Intron 2 >>>> LeuMetSe : 384 ||||||||||!!!|||.!! 373 bp :!!:!:|| rLeuGluThrCysThrThr++ ++ValLeuSe 1703216 : GCTGGAAACTTGTACCACGgt.........................agGTGCTCAG : 1703615 385 : rThrThrMetSerTyrPheThrLeuMetArgGluSerSerVal : 398 ||||.!!||||||||||||||||||:!:|||.!.|||! !||| rThrAlaMetSerTyrPheThrLeuLeuArgHisSerPheVal 1703616 : TACAGCGATGTCATACTTCACTTTATTAAGGCACTCTTTTGTA : 1703659 vulgar: gi|350425896|ref|XP_003494267.1| 235 398 . KQ414915.1 1702190 1703659 + 392 M 54 162 5 0 2 I 0 603 3 0 2 M 92 276 5 0 2 I 0 369 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702191 1703659 392 + . gene_id 3 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702191 1702352 . + . KQ414915.1 exonerate:protein2genome:local exon 1702191 1702352 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1702353 1702354 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1702353 1702959 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702958 1702959 . + . intron_id 0 ; splice_site "GG" KQ414915.1 exonerate:protein2genome:local cds 1702960 1703235 . + . KQ414915.1 exonerate:protein2genome:local exon 1702960 1703235 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1703236 1703237 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1703236 1703608 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1703607 1703608 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1703609 1703659 . + . KQ414915.1 exonerate:protein2genome:local exon 1703609 1703659 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702191 1703659 392 + . alignment_id 3 ; Query gi|350425896|ref|XP_003494267.1| ; Align 1702191 236 162 ; Align 1702960 290 276 ; Align 1703609 382 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 371 Query range: 150 -> 380 Target range: 1681725 -> 1682808 151 : AsnIleGlyLysAsnLysSerAspArgValLeuProPheLysMetTrpVal<->As : 168 ||||||||||||!:! ! ..!!!:|||:!!||||||||| !.!. ! ||| :! AsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAs 1681726 : AACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAA : 1681780 169 : pLeuProLeuSerValThrProTyrTyrGluIleMetPheValIleGln >>>> : 185 !|||||| !|||:!!||||||||||||||||||:::|||||||||:!! nLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681781 : CTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt..... : 1681833 186 : Target Intron 1 >>>> LeuAlaThrValGlnGlnIleGlyValThrTyrL : 196 120 bp ! !:!!||| !!!. |||:!! !!:!! ++ThrLeuSerValValHisSerGlyIleCysPheC 1681834 : ....................agACATTATCTGTGGTGCATTCGGGAATTTGTTTCT : 1681984 197 : euCysAsnAspAsnPheLeuCysIleLeuAsnMetHisValIleCysGlnPheArg : 214 !||| !|||||||||||||||||||||!:!||||||||| ! ! ||||||!:! ysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLys 1681985 : GTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAG : 1682038 215 : MetLeuHisAsnArgLeuLeuAsnLeuTrpLysIleIleAspGlnLysThrAspLy : 233 !!:|||!!.|||!:!|||! !!.. :!!:!:..!:!!|||:::...|| IleLeuGlnAsnLysLeuGlnThr---------ValLeuSerGluLysSerSerLy 1682039 : ATTTTACAAAACAAACTCCAAACA---------GTATTGAGTGAGAAatcttcgaa : 1682086 234 : sIleAspTyrAlaAspLysCysTyrIleAlaLeuLysLysCysIleArgGlnHisG : 252 | ::: ::: ! |||! !! !!!!|||:!!|||:!!!:! ! |||! s---GluLysSerAlaGlyLeuTyrLysGluPheLysGluCysValGlnTyrHisH 1682087 : a---gaaaaatcagctGGACTGTATAAAGAGTTCAAGGAGTGCGTACAGTATCATC : 1682140 253 : lnSerLeuIleLysPheCysGluLysLeuGluTyrValAsnThrPheProIlePhe : 270 !.! !|||:!!..!::: |||||||||||||||||| ! ! !!|||:!:.!. isLeuLeuLeuSerTyrValGluLysLeuGluTyrValPheCysValProLeuMet 1682141 : ATTTGCTTCTTTCGtacgtggaaaaattggaatacgTATTTTGTGTCCCGTTGATG : 1682194 271 : GlyHisValValValPheSerLeuLeuMetCysPheAspThrTyrGluIleLeuLe : 289 !!!.:!!:!!|||! !|||:!!:!!:!!||| !!... !!:!:!!:!!! !|| IleGlnLeuLeuValSerSerIleValLeuCysValSerGlyPheGlnLeuSerLe 1682195 : ATTCAATTGCTGGTGTCTAGCATAGTTCTGTGCGTCTCGGGGTTTCAACTATCATT : 1682251 290 : u >>>> Target Intron 2 >>>> AlaAsnValSerThrGlyThrArgLe : 298 | 285 bp !.!|||! ! ! ! !! !||||| u++ ++ValAsnGlyValLeuMetLysArgLe 1682252 : Ggt.........................agGTGAACGGTGTATTGATGAAACGATT : 1682563 299 : uIlePheValPheHisMetValGlySerPheIleHisIleIlePhePheThrTyrT : 317 |:!:|||:!! !:!!.!.:!!|||.!! ! |||...|||.........||| ! uLeuPheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePheLeuIleThrLeuA 1682564 : GTTGTTCCTAAATTACTTTCTCGGTGGAGTGATacagatatttttaataacccTAA : 1682620 318 : hrCysHisGlyLeuIleGluGluSerSerAsnIleSerLeuAlaThrTyrSerGly : 335 .!|||:!!! !:!!!!:|||:!!|||.!! !|||.!! !|||! !|||||| !! snCysAsnAspIleMetGluGlnSerGlyAlaIleGlyThrAlaIleTyrSerCys 1682621 : ATTGCAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAGCGATCTACAGTTGT : 1682674 336 : TrpTrpThrIleLeuProMetThrGluThrGlyArgMetLeuArgGluAspValLy : 354 ||| ! ! ::: ... ..!!!!|||:!!|||:!!! AsnTrpGlu---ArgAsnValTyrAsnHisPheTyrGlnPheArgLysAspMetMe 1682675 : AATTGGGAG---AGGAAtgtttataatcatttttaccAGTTCAGAAAGGATATGAT : 1682728 355 : sValMetMetMetLysSerMetArgProCysTyrLeuSerAlaGlyGlyPhePheP : 373 !:!!:!:|||:!:::!:!!! ||||||||||||:!!||||||!.! !||||||| tIleValMetValArgAlaLysArgProCysTyrIleSerAlaAlaLysPhePheP 1682729 : GATTGTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGCAGCGAAATTCTTTC : 1682785 374 : roIleSerLeuGluThrSerThr : 380 ||||||||||||||:!!! !||| roIleSerLeuGluSerPheThr 1682786 : CAATCTCCCTTGAATCGTTCACG : 1682808 vulgar: gi|350425896|ref|XP_003494267.1| 150 380 . KQ414915.1 1681725 1682808 + 371 M 17 51 G 0 3 M 17 51 5 0 2 I 0 116 3 0 2 M 38 114 G 3 0 M 8 24 G 1 0 M 55 165 5 0 2 I 0 281 3 0 2 M 49 147 G 1 0 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681726 1682808 371 + . gene_id 4 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681726 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681726 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682253 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682253 . + . insertions 0 ; deletions 4 KQ414915.1 exonerate:protein2genome:local splice5 1682254 1682255 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1682254 1682538 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1682537 1682538 . + . intron_id 1 ; splice_site "aG" KQ414915.1 exonerate:protein2genome:local cds 1682539 1682808 . + . KQ414915.1 exonerate:protein2genome:local exon 1682539 1682808 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1681726 1682808 371 + . alignment_id 4 ; Query gi|350425896|ref|XP_003494267.1| ; Align 1681726 151 51 ; Align 1681780 168 51 ; Align 1681951 185 114 ; Align 1682065 226 24 ; Align 1682089 235 165 ; Align 1682539 290 147 ; Align 1682686 340 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 351 Query range: 68 -> 223 Target range: 1710872 -> 1712002 69 : PheLeuLeuSerAsnThrLeuCysIleIleLeuAlaMetPheLysLeuLeuIleLe : 87 ||| !:!!!!!!.! !|||! :!:|||:!! !! .!!|||:!!:!!||||| PheAspIleCysThrLeuLeuSerValIleMetProAlaIleLysIleIleIleLe 1710873 : TTCGACATATGCACTCTTCTGTCGGTGATAATGCCCGCTATCAAAATAATCATCCT : 1710927 88 : uAsnPheArgArgThrGluPheLysAspLeuValLeuPheAlaGlnGlnAsnPheT : 106 | !.!!!.!!:! !|||||| !|||:!!:!!!:!.!!:!!!:!.!.||| uPheIleAsnLysGluGluPhePheArgLeuIleValTyrThrGluArgGlnPheM 1710928 : GTTTATCAACAAGGAGGAGTTTTTCCGTTTGATCGTGTACACAGAGCGACAATTCA : 1710984 107 : rpHisPheLysTyrAspHisAspGluLysIleLeuPheMetLysCysArgLysLeu : 124 !:!! ! |||:!!.!.||||||!:!! :!! ! .!. ! |||!:!:::||| etAsnGlyAspTyrAsnGluAspGluArgLysIleValPheAspCysLysArgLeu 1710985 : TGAACGGGGATTACAACGAGGACGAGAGGAAGATTGTGTTCGATTGTAAACGCCTG : 1711038 125 : CysLysLeuTrpThrIleThrAlaCysSerPheThrGlnAlaSerLeuAlaPheTy : 143 |||! !!!!!::||| ! ! !! ||| ! ||| !:!!!!!:!! !! !|| CysThrPhePheThrCysPheLeuSerSerValThrLeuSerCysValLeuSerTy 1711039 : TGTACATTCTTCACTTGTTTCCTCTCATCTGTGACTTTATCGTGCGTTCTCTCTTA : 1711095 144 : rIleIleThrProIleCys{A} >>>> Target Intron 1 >>>> {la}A : 151 |:!!:!!|||||||||! !{ } 119 bp { !}| rValValThrProIleTyr{M}++ ++{et}A 1711096 : CGTCGTCACTCCAATTTAC{A}gt.........................ag{TG}A : 1711238 152 : snIleGlyLysAsnLysSerAspArgValLeuProPheLysMetTrpValAspLeu : 169 ||||||||!:!|||:!!|||||||||:!!||||||||||||||||||:!!|||:!! snIleGlyArgAsnGluSerAspArgIleLeuProPheLysMetTrpIleAspIle 1711239 : ATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTGGATTGATATA : 1711292 170 : ProLeuSerValThrProTyrTyrGluIleMetPheValIleGln >>>> Targ : 185 ||| !|||:!!|||||||||:::||||||...|||...:!!||| ProThrSerMetThrProTyrPheGluIlePhePheThrLeuGln++ 1711293 : CCGACATCGATGACACcgtattttgaaatattcttcaccTTACAGgt......... : 1711342 186 : et Intron 2 >>>> LeuAlaThrValGlnGlnIleGlyValThrTyrLeuCy : 197 546 bp :!! !:!!!.! ! ||||||||||||!:!||| !|| ++ValLeuSerAlaTyrGlnIleGlyValSerTyrGlyCy 1711343 : ................agGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGGTTG : 1711922 198 : sAsnAspAsnPheLeuCysIleLeuAsnMetHisValIleCysGlnPheArgMetL : 216 | !|||||| !!|||||||||:!!|||:!:|||:!! ! !|||||||||!!:| sPheAspAsnValLeuCysIleMetAsnLeuHisLeuAlaThrGlnPheArgIleL 1711923 : CTTCGACAACGTTCTATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAATAC : 1711979 217 : euHisAsnArgLeuLeuAsnLeu : 223 ||!!.:!!||||||:!!|||:!! euGlnHisArgLeuValAsnIle 1711980 : TGCAACATAGACTGGTGAATATA : 1712002 vulgar: gi|350425896|ref|XP_003494267.1| 68 223 . KQ414915.1 1710872 1712002 + 351 M 81 243 S 0 1 5 0 2 I 0 115 3 0 2 S 1 2 M 34 102 5 0 2 I 0 542 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1710873 1712002 351 + . gene_id 5 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1710873 1711116 . + . KQ414915.1 exonerate:protein2genome:local exon 1710873 1711116 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711117 1711118 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711117 1711235 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711234 1711235 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711236 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711236 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712002 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712002 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1710873 1712002 351 + . alignment_id 5 ; Query gi|350425896|ref|XP_003494267.1| ; Align 1710873 69 243 ; Align 1711238 151 102 ; Align 1711886 185 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 319 Query range: 236 -> 393 Target range: 1707547 -> 1708472 237 : AlaAspLysCysTyrIleAlaLeuLysLysCysIleArgGlnHisGlnSerLeuIl : 255 :!!|||:!!|||||| ! !!!!|||!!.||||||!:!|||||||||:!!||||| SerAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIl 1707548 : TCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCAT : 1707602 256 : eLysPheCysGluLysLeuGluTyrValAsnThrPheProIlePheGlyHisValV : 274 |:!!!:!|||.!.:!!|||:!! ! ||| ! !!!. !:!:.!!!.!!!.|||: eGluTyrCysAsnGluLeuGlnGluValPheGlyLeuPheValLeuAlaGlnValL 1707603 : AGAATACTGTAACGAACTTCAAGAGGTGTTCGGTTTATTTGTGCTTGCACAAGTGT : 1707659 275 : alValPheSerLeuLeuMetCysPheAspThrTyrGluIleLeu >>>> Targe : 289 !!:!!||||||||||||||||||.!!||| !||| !:!::!! euLeuPheSerLeuLeuMetCysLeuAspGlyTyrLeuValMet++ 1707660 : TGCTCTTCAGTTTGTTAATGTGCCTCGATGGATATTTGGTGATGgt.......... : 1707706 290 : t Intron 1 >>>> LeuAlaAsnValSerThrGlyThrArgLeuIlePheVal : 301 457 bp ! !:!!..! !!! ! ! !||||||! !|||:!! ++---GluAspThrProIleMetGlnArgLeuThrPheLeu 1707707 : ...............ag---GAAGATACTCCCATTATGCAGCGCCTTACTTTCTTG : 1708194 302 : PheHisMetValGlySerPheIleHisIleIlePhePheThrTyrThrCysHisGl : 320 ||||||:!:..!|||!!!.!. !!!.:!::!:.!.|||||||||!:!||| !! ! PheHisLeuThrGlyCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCy 1708195 : TTTCACCTAACGGGATGCCTGTGCCAACTGTTGATGTTCACCTACAGCTGCGATTG : 1708251 321 : yLeuIleGluGluSerSerAsnIleSerLeuAlaThrTyrSerGlyTrpTrpThrI : 339 !||||||..!||||||! !|||:!::!! !|||! !|||..! !!! !|||! ! sLeuIleArgGluSerLeuAsnValAlaAsnAlaIleTyrAspCysSerTrpIleH 1708252 : CCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATATACGACTGCTCGTGGATTC : 1708308 340 : leLeuProMetThrGluThrGlyArgMetLeuArgGluAspValLysValMetMet : 357 !||||||||| !..!:!!|||||||||||||||:!!|||:!!! ! !!:!:!!: isLeuProMetAspArgSerGlyArgMetLeuArgLysAspLeuThrPheValIle 1708309 : ACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGACATTCGTCATT : 1708362 358 : MetLysSerMetArgProCysTyrLeuSerAlaGlyGlyPhePheProIleSerLe : 376 !:!|||! !||||||! !|||!!!||| !!||||||||||||:!:||||| GlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePheProValSerLe 1708363 : GGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACT : 1708419 377 : uGluThrSerThrAlaLeuMetSerThrThrMetSerTyrPheThrLeuMet : 393 |||||||! !|||:!!:!!!!: !:!!|||.!. ! .!.:!!:!!:!: uGluThrTyrThrSerValIleHisSerThrPheHisThrIleSerMetLeu 1708420 : GGAAACGTACACTTCGGTAATTCATTCAACATTTCACACGATATCGATGTTA : 1708472 vulgar: gi|350425896|ref|XP_003494267.1| 236 393 . KQ414915.1 1707547 1708472 + 319 M 52 156 5 0 2 I 0 453 3 0 2 G 1 0 M 104 312 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707548 1708472 319 + . gene_id 6 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1707548 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707548 1707703 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708472 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708472 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1707548 1708472 319 + . alignment_id 6 ; Query gi|350425896|ref|XP_003494267.1| ; Align 1707548 237 156 ; Align 1708161 290 312 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 210 Query range: 150 -> 223 Target range: 1707001 -> 1707496 151 : AsnIleGlyLysAsnLysSerAspArgValLeuProPheLysMetTrpValAspLe : 169 !::||||||||||||:::|||||||||:!!||| ! !!!!..!.|||:!!|||!! SerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAspPh 1707002 : AgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGACTT : 1707056 170 : uProLeuSerValThrProTyrTyrGluIleMetPheValIleGln >>>> Tar : 185 !||| !!!!:!!||||||||||||||||||:!:|||..! ||| eProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707057 : TCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt........ : 1707106 186 : get Intron 1 >>>> LeuAlaThrValGlnGlnIleGlyValThrTyrLeuC : 197 276 bp :!! !! !|||..! ! :!! !!:!!!:!||||||| ++ValPheIleValMetTyrValCysIleSerTyrLeuC 1707107 : .................agGTTTTTATCGTAATGTACGTTTGCATAAGCTACCTTT : 1707416 198 : ysAsnAspAsnPheLeuCysIleLeuAsnMetHisValIleCysGlnPheArgMet : 215 ||! !|||||||||||||||!!::!!|||:!:|||..! ! !|||||||||!!: ysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIle 1707417 : GTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATA : 1707470 216 : LeuHisAsnArgLeuLeuAsnLeu : 223 |||!!. !!||||||! !|||:!! LeuGlnTyrArgLeuSerAsnVal 1707471 : TTGCAATACAGACTGTCGAATGTG : 1707496 vulgar: gi|350425896|ref|XP_003494267.1| 150 223 . KQ414915.1 1707001 1707496 + 210 M 34 102 5 0 2 I 0 272 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707002 1707496 210 + . gene_id 7 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1707002 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707002 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707496 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707496 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1707002 1707496 210 + . alignment_id 7 ; Query gi|350425896|ref|XP_003494267.1| ; Align 1707002 151 102 ; Align 1707380 185 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 189 Query range: 277 -> 390 Target range: 1695578 -> 1695920 278 : LeuLeuMetCysPheAspThrTyrGluIleLeuLeuAlaAsnValSerThrGlyTh : 296 ||| ::: ::: !!.!|||...|||!!!:!! !!..! !||| !! !:! Leu***LeuIleTyrProAsnTyrSerIlePheValGlnThrAspSerProProSe 1695579 : ctttaattaatttacccTAATTATTCCATATTTGTACAGACAGACTCACCACCTTC : 1695633 297 : rArgLeuIle<->PheValPheHisMetValGlySerPheIleHisIleIlePheP : 314 !||| !:!! !!.|||.!!:!!:!!!.!|||!!!!!. !!!.:!!.!!.!.| rArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrLeuCysGlnLeuPheMetP 1695634 : GAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTTTGTGTCAACTTTTTATGT : 1695690 315 : heThrTyrThrCysHisGlyLeuIleGluGluSerSerAsnIleSerLeuAlaThr : 332 ||||||||!:!||| !!||||||! !..!||||||! !:!!:!!||| !|||..! heThrTyrSerCysAspGlyLeuThrArgGluSerMetAspValSerArgAlaVal 1695691 : TCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATGGACGTTAGCAGAGCTGTA : 1695744 333 : TyrSerGlyTrpTrpThrIleLeuProMetThrGluThrGlyArgMetLeuArgGl : 351 !:!:!! !! !|||.!!! !||||||||| !..!!.!|||!:!! :!!|||:! PheAlaArgProTrpAlaAsnLeuProMetAspArgAsnGlyLysSerValArgGl 1695745 : TTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAATGGGAAAAGTGTGCGACA : 1695801 352 : uAspValLysValMetMetMetLysSerMetArgProCysTyrLeuSerAlaGlyG : 370 !..!:!! !:!!:!!!!:|||!:!|||! ||| !|||! !|||!!!|||.!!| nSerMetLeuMetValIleMetArgSerAsnArgCysCysCysLeuThrAlaSerG 1695802 : AAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTTGCTGCTTAACAGCCAGCG : 1695858 371 : lyPhePheProIleSerLeuGluThrSerThrAlaLeuMetSerThrThrMetSer : 388 |||||||||||:!!||||||||||||! !|||!.!:!!!!:!:! ! !! !||| lyPhePheProValSerLeuGluThrTyrThrGlyValIleAsn***AspThrSer 1695859 : GGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGGTAATTAATTAAGATACGTCC : 1695912 389 : TyrPhe : 390 !||| IlePhe 1695913 : ATTTTT : 1695920 vulgar: gi|350425896|ref|XP_003494267.1| 277 390 . KQ414915.1 1695578 1695920 + 189 M 22 66 G 0 3 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1695579 1695920 189 + . gene_id 8 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1695579 1695920 . + . KQ414915.1 exonerate:protein2genome:local exon 1695579 1695920 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1695579 1695920 189 + . alignment_id 8 ; Query gi|350425896|ref|XP_003494267.1| ; Align 1695579 278 66 ; Align 1695648 300 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 66 -> 151 Target range: 1694003 -> 1694258 67 : CysThrPheLeuLeuSerAsnThrLeuCysIleIleLeuAlaMetPheLysLeuLe : 85 |||! !!:!:!! !!!!|||! !|||! !:!! :!!!.!.!.||||||:!!|| CysIleTyrValGlyCysAsnIleLeuTyrLeuAlaIleValPhePheLysIleLe 1694004 : TGCATTTACGTCGGGTGCAACATTTTATACCTAGCGATCGTTTTCTTCAAGATCCT : 1694058 86 : uIleLeuAsnPheArgArgThrGluPheLysAspLeuValLeuPheAlaGlnGlnA : 104 |:!!||| !! !.!|||! !|||||| ! ! |||:!! !|||.!!|||:!!! uValLeuTyrLysHisArgIleGluPheTyrGlyLeuIleArgPheThrGlnGluL 1694059 : CGTTTTGTACAAGCACAGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAGAGA : 1694115 105 : snPheTrpHisPheLysTyrAspHisAspGluLysIleLeuPheMetLysCysArg : 122 !.|||||||||||| ! |||:!! ||||||:!!:!!!!. :!!|||!:! ysPheTrpHisPheAspTyrAsnSerArgGluLysLeuIleLeuSerGluCysLys 1694116 : AATTCTGGCATTTCGACTATAATTCACGGGAGAAGTTAATTTTATCCGAGTGCAAG : 1694169 123 : LysLeuCysLysLeuTrpThrIleThrAlaCysSerPheThrGlnAlaSerLeuAl : 141 |||:!!|||! :!!!::! !:!!.!! ! !!! !! !||||||!.!!!!! !|| LysIleCysThrValPheIleValAlaPheSerPheCysThrGlnGlyThrCysAl 1694170 : AAGATATGTACCGTTTTCATCGTTGCCTTCAGCTTCTGTACTCAGGGCACGTGTGC : 1694226 142 : aPheTyrIleIleThrProIleCysAlaAsn : 151 | !|||:!!:!:|||||||||! ...||| aGlyTyrValValThrProIleLeuGlyAsn 1694227 : TGGTTACGTAGTGACACCTATTTTAggtaat : 1694258 vulgar: gi|350425896|ref|XP_003494267.1| 66 151 . KQ414915.1 1694003 1694258 + 183 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694004 1694258 183 + . gene_id 9 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1694004 1694258 . + . KQ414915.1 exonerate:protein2genome:local exon 1694004 1694258 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694004 1694258 183 + . alignment_id 9 ; Query gi|350425896|ref|XP_003494267.1| ; Align 1694004 67 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 231 -> 291 Target range: 1712053 -> 1712233 232 : AspLysIleAspTyrAlaAspLysCysTyrIleAlaLeuLysLysCysIleArgGl : 250 |||..!! !!!:!:!||||||!!.! !||| !!.!!!!|||!:!|||:!!||||| AspSerThrGluPheAlaAspAsnSerTyrAspValPheLysArgCysValArgGl 1712054 : GATTCGACAGAATTTGCGGATAACTCTTACGACGTTTTCAAAAGATGCGTTCGTCA : 1712108 251 : nHisGlnSerLeuIleLysPheCysGluLysLeuGluTyrValAsnThrPheProI : 269 |||||||||||||!!: |||||||||||||||||| ::: !!:!.!. !| nHisGlnSerLeuMetAlaPheCysGluLysLeuGluGluMetPheSerMetIleI 1712109 : ACATCAATCTCTGATGGCTTTCTgcgagaaactcgaagaaatgTTCAGTATGATTA : 1712165 270 : lePheGlyHisValValValPheSerLeuLeuMetCysPheAspThrTyrGluIle : 287 ||.!.|||!!.:!!:!!|||||||||:!!!!!||||||.!!|||..!! !:!!:!! leLeuGlyGlnLeuLeuValPheSerIlePheMetCysLeuAspValCysGlnVal 1712166 : TACTGGGGCAATTGTTAGTGTTCAGTATTTTTATGTGTCTCGACGTGTGCCAAGTA : 1712219 288 : LeuLeuAlaAsn : 291 ||||||!.!!:! LeuLeuValSer 1712220 : CTTCTGGTTAGT : 1712233 vulgar: gi|350425896|ref|XP_003494267.1| 231 291 . KQ414915.1 1712053 1712233 + 161 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712054 1712233 161 + . gene_id 10 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1712054 1712233 . + . KQ414915.1 exonerate:protein2genome:local exon 1712054 1712233 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712054 1712233 161 + . alignment_id 10 ; Query gi|350425896|ref|XP_003494267.1| ; Align 1712054 232 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 235 -> 294 Target range: 1699809 -> 1699986 236 : TyrAlaAspLysCysTyrIleAlaLeuLysLysCysIleArgGlnHisGlnSerLe : 254 !:!|||!!:!!.||||||! |||!!!|||!!.|||:!!||||||||||||!:!! PheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHisGlnAsnHi 1699810 : TTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCA : 1699864 255 : uIleLysPheCysGluLysLeuGluTyrValAsnThrPheProIlePheGlyHisV : 273 !|||! !!:!|||.!.!:!|||.!. ! :!! !||| !! !:!!.!!||||||: sIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValLeuGlyHisI 1699865 : TATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTACTCGGACACA : 1699921 274 : alValValPheSerLeuLeuMetCysPheAspThrTyrGluIleLeuLeuAlaAsn : 291 !!:!!|||||||||||||||!!:|||.!.! ! !!:!:!!:!:|||:!!! !||| leLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeuValGluAsn 1699922 : TACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTCGTAGAAAAC : 1699975 292 : ValSerThr : 294 :!!! !||| IleIleThr 1699976 : ATCATCACC : 1699986 vulgar: gi|350425896|ref|XP_003494267.1| 235 294 . KQ414915.1 1699809 1699986 + 156 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699810 1699986 156 + . gene_id 11 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1699810 1699986 . + . KQ414915.1 exonerate:protein2genome:local exon 1699810 1699986 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699810 1699986 156 + . alignment_id 11 ; Query gi|350425896|ref|XP_003494267.1| ; Align 1699810 236 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 149 -> 186 Target range: 1694352 -> 1694463 150 : AlaAsnIleGlyLysAsnLysSerAspArgValLeuProPheLysMetTrpValAs : 168 ||||||:!!|||||||||:!!|||!!:|||:!!|||||||||!!.||||||||||| AlaAsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTrpValAs 1694353 : GCAAATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTGGGTTGA : 1694407 169 : pLeuProLeuSerValThrProTyrTyrGluIleMetPheValIleGlnLeuAla : 186 |!!!||| !.!!:!!:!!||||||||||||:!!:!:|||:!!||||||:!!::! pPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGlnValSer 1694408 : CTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGGTAAGC : 1694463 vulgar: gi|350425896|ref|XP_003494267.1| 149 186 . KQ414915.1 1694352 1694463 + 145 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694353 1694463 145 + . gene_id 12 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1694353 1694463 . + . KQ414915.1 exonerate:protein2genome:local exon 1694353 1694463 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694353 1694463 145 + . alignment_id 12 ; Query gi|350425896|ref|XP_003494267.1| ; Align 1694353 150 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 0 -> 69 Target range: 1692073 -> 1692280 1 : MetHisThrThrArgTyrThrAspIleSerIleThrLeuSerGlnPheLeuLeuLy : 19 |||||| !..!!:! !! !||||||||||||..!! !||| ||||||:!!|| MetHisLeuValGlnSerLysAspIleSerIleValTrpSerPhePheLeuMetLy 1692074 : ATGCATTTAGTGCAGAGTAAAGATATCTCGATCGTTTGGTCGTTCTTTTTGATGAA : 1692128 20 : sLeuAlaGlyValTrpMetThrValAsnAsnAlaGluGluArgArgArgArgLeuT : 38 |:!!!.!|||:!!|||:!:.!!!.!:!!.!.||||||:!!|||||||||!.!!!!. sIleValGlyLeuTrpLeuAlaAlaAspGluAlaGluGlnArgArgArgAsnPheA 1692129 : AATCGTAGGTCTGTGGCTAGCCGCCGACGAGGCTGAACAACGTCGGAGAAATTTCG : 1692185 39 : hrMetAlaPheThrAlaValIleHisValTyrGlyLeuTyrLeuAsnLeuGlyAsp : 56 !!:!! !!:!||| ! ! ! !! !!.!! !! !:!! :!! !!||| laLeuIleTyrThrLeuAsnAlaIlePheIleAlaSerCysIleAlaMetArgAsp 1692186 : CGCTGATTTACACGCTGAACGCGATTTTTATCGCTTCGTGTATAGCAATGAGAGAT : 1692239 57 : AlaTyrTyrThrTrpAsnAspLeuSerHisCysThrPhe : 69 !||||||:!!|||...:!!:!!!:! !!|||!:: IleTyrTyrSerTrpGlyAsnValAsnValSerThrTrp 1692240 : ATATACTATTCCTGGGGAAACGTGAACGTGAGTACTTGG : 1692280 vulgar: gi|350425896|ref|XP_003494267.1| 0 69 . KQ414915.1 1692073 1692280 + 124 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1692074 1692280 124 + . gene_id 13 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1692074 1692280 . + . KQ414915.1 exonerate:protein2genome:local exon 1692074 1692280 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1692074 1692280 124 + . alignment_id 13 ; Query gi|350425896|ref|XP_003494267.1| ; Align 1692074 1 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 1027 Query range: 0 -> 398 Target range: 1704894 -> 1709249 1 : MetSerSerLysLysGlyArgAspLeuSerIleThrValValSerPheTyrMetLy : 19 |||!!!|||||||||..!||||||:!!|||:!:!:!|||..!:!!||||||:!!|| MetThrSerLysLysAsnArgAspValSerValSerValThrAlaPheTyrLeuLy 1704895 : ATGACTTCGAAGAAGAACAGGGACGTATCAGTGAGCGTCACAGCTTTCTACTTGAA : 1704949 20 : sIleValGlyPheTrpLeuAlaLysAsnHisValGluGluArgTrpArgAsnPheA : 38 ||||:!!||||||||||||||| ! !.!:!!! !|||:!!||| ! |||!!.|||| sIleIleGlyPheTrpLeuAlaAspThrTyrGluGluLysArgArgArgLysPheA 1704950 : AATCATCGGCTTCTGGTTAGCTGACACTTACGAGGAGAAACGTCGAAGAAAGTTCG : 1705006 39 : laMetIleTyrThrThrPheAlaIleLeuValAlaIleValValGluThrArgAsp : 56 ||..!! !! !|||! !.!! !:!!:!! !|||:!::!!:!!|||..!|||||| laGlnAsnCysThrIleLeuMetLeuMetCysAlaValLeuLeuGluValArgAsp 1705007 : CGCAGAATTGCACGATACTTATGCTTATGTGCGCTGTGCTGCTTGAGGTGAGGGAT : 1705060 57 : LeuTyrPheThrTrpGlyAspPheSer >>>> Target Intron 1 >>>> : 66 :!!||| !! !||||||||||||.!! 1391 bp IleTyrHisIleTrpGlyAspPheGly++ ++ 1705061 : ATCTATCACATCTGGGGAGATTTCGGCgt.........................ag : 1706479 67 : GlyThrValTyrIleValCysAsnLeuValThrIleIleLeuValLeuPheLysIl : 84 !.!..!||||||:!!:!!||||||:!!:!!|||:!: !:!! !||||||||||| AlaValValTyrValMetCysAsnIleLeuThrValGlyIleSerLeuPheLysIl 1706480 : GCCGTTGTTTACGTAATGTGCAACATTCTAACAGTGGGCATAAGTTTGTTCAAGAT : 1706535 85 : eLeuValCysPheValTyrLysLysGluLeuLeuSerLeuIleGlnTyrAlaLysT : 103 |||||||! .!. ! |||::::::...|||...||||||:::||||||!:!| eLeuValSerMetArgSerLysGluLysPheLeuGluLeuIleLysTyrAlaArgT 1706536 : CTTGGTCTCGATGAGGagtaaggaaaaatttttggaattaattaaatacgcCAGAA : 1706592 104 : hrAsnPheTrpHisSerAsnTyrAsnSerHisGluArgMetIleValAspArgCys : 121 |||||||||||||||||:!!|||:!!|||!!.|||!:!|||||||||:!!..!||| hrAsnPheTrpHisSerAspTyrAspSerGlnGluGlnMetIleValAsnGluCys 1706593 : CGAATTTCTGGCACTCGGATTATGACTCGCAGGAGCAAATGATTGTGAACGAGTGT : 1706646 122 : LysArgThrCysThrValLeuValCysValPheThrPhePheAlaGlnGlyThrVa : 140 ||||||:!!|||||| !!|||:!!|||||||||!.!|||||||||.!.|||||||| LysArgSerCysThrPheLeuIleCysValPheAsnPhePheAlaAsnGlyThrVa 1706647 : AAACGTTCTTGTACATTCCTCATATGCGTGTTTAATTTCTTCGCTAATGGGACAGT : 1706703 141 : lIleSerTyrValIleGlyProIleGln{A} >>>> Target Intron 2 >> : 150 | !.!!|||:!!||| !!|||||| !{!} 266 bp lSerGlyTyrIleIleArgProIleVal{G}++ 1706704 : GTCTGGATACATAATCAGGCCAATTGTA{G}gt....................... : 1706736 151 : >> {la}AsnIleGlyArgAsnGluThrAsnArgIleLeuProPheAsnIleTrp : 166 { !}!::||||||:::||||||::::!!||||||||| ! !!|||.!!||| ++{lu}SerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrp 1706737 : ..ag{AA}AgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGG : 1707047 167 : LeuAsnValProIleCysTyrMetThrProTyrPheGluIle >>>> Target : 181 :!!:!! !!|||! ! ! ||||||||||||!:!|||||| 29 IleAspPheProThrThr---MetThrProTyrTyrGluIle-+ 1707048 : ATTGACTTTCCGACAACC---ATGACACCATACTATGAGATAtt............ : 1707091 182 : Intron 3 >>>> GluPheIleIleGlnValLeuCysLeuTyrHisValGlyVa : 194 1 bp ! ||||||:!!..! !:!!|||:!! !:!!:!! !!:! ++ValPheIleValMetTyrValCysIleSerTyrLeuCysIl 1707092 : .............agGTTTTTATCGTAATGTACGTTTGCATAAGCTACCTTTGTAT : 1707419 195 : l<->CysTyrLeuCysPheAspAsnIleLeuCysIleMetAsnLeuHisThrAlaG : 212 ! !!:!||||||.!. !|||:!!! ! !! .!.!!!!..! ! ! eAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuG 1707420 : CGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGC : 1707476 213 : lyGlnPheArgIleLeuGlnTyrArgLeuGluAsnMetCysGlyGluAsnAsnAsn : 230 ! ! ! ! ! !! ! !! !.!..!. ::: :::... lnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAspLysIleSerLys 1707477 : AATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttcgaaa : 1707530 231 : GluLysLeuSerTyrSerIleCysLysTyrMetLysLeuLysThrTyrIleGlnGl : 249 ::: ! !||| !!||| ! ||| |||!!!|||!.!! !|||||||| LysThrProSerAsnSerAspGluCysTyrAlaLysPheLysAsnCysIleGlnGl 1707531 : aaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACA : 1707587 250 : nHisGlnMetLeuIleGluTyrCysLysLysLeuGluGlnValPheAsnLeuIleV : 268 ||||||| |||||||||||||||!!.:!!|||:!!:!!||||||..!|||.!!| nHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluValPheGlyLeuPheV 1707588 : GCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGGTGTTCGGTTTATTTG : 1707644 269 : alLeuGlyGlnValSerLeuPheSerLeuLeuMetCysLeuAspGlyTyrLeuVal : 286 |||||!.!||||||! !||||||||||||||||||||||||||||||||||||||| alLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAspGlyTyrLeuVal 1707645 : TGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGGATATTTGGTG : 1707698 287 : LeuThr >>>> Target Intron 4 >>>> GluAspAlaProLeuMetArg : 295 :!! 457 bp ||||||.!!|||:!!|||!:! Met---++ ++GluAspThrProIleMetGln 1707699 : ATG---gt.........................agGAAGATACTCCCATTATGCAG : 1708179 296 : ArgLeuIlePheLeuPheHisIleThrGlyCysMetCysGlnLeuLeuMetPheTh : 314 ||||||! !||||||||||||:!!|||||||||:!!|||||||||||||||||||| ArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuMetPheTh 1708180 : CGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGATGTTCAC : 1708236 315 : rTyrSerCysAspCysLeuIleArgAspSerThrAsnValAlaAsnAlaAlaTyrL : 333 |||||||||||||||||||||||||!!:||| !||||||||||||||| !||| rTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIleTyrA 1708237 : CTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATATACG : 1708293 334 : ysSerLeuTrpSerPheLeuProMetAspLysTyrGlyLysIleLeuArgArgAsp : 351 ! !!!! !|||! ! !||||||||||||!:!! !|||::!!!:||||||!:!||| spCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAsp 1708294 : ACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGAT : 1708347 352 : LeuMetLeuIleIleMetArgSerAsnIleProCysCysLeuThrAlaSerGlyPh : 370 |||! !!!:!!||| ||||||!..:!!||||||||||||||||||!!!||||| LeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPh 1708348 : TTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATT : 1708404 371 : ePheIleValSerLeuGluThrTyrThrGly >>>> Target Intron 5 >> : 381 |||| !|||||||||||||||||||||..! 759 bp ePheProValSerLeuGluThrTyrThrSer++ 1708405 : CTTCCCTGTGTCACTGGAAACGTACACTTCGgt....................... : 1708439 382 : >> IleLeuSerSerAlaAlaSerTyrPheThrLeuLeuArgAsnHisAlaSerA : 398 |||||||||!!!|||||||||||||||||||||||||||!!.!!.! !:!!! ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgLysGlnGluAlaG 1708440 : ..agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTACGAAAACAAGAAGCAG : 1709247 399 : sp : 398 !: lu 1709248 : AA : 1709249 vulgar: gi|350425958|ref|XP_003494287.1| 0 398 . KQ414915.1 1704894 1709249 + 1027 M 65 195 5 0 2 I 0 1387 3 0 2 M 84 252 S 0 1 5 0 2 I 0 262 3 0 2 S 1 2 M 22 66 G 1 0 M 7 21 5 0 2 I 0 287 3 0 2 M 14 42 G 0 3 M 93 279 G 1 0 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1704895 1709249 1027 + . gene_id 1 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1704895 1705089 . + . KQ414915.1 exonerate:protein2genome:local exon 1704895 1705089 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1705090 1705091 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1705090 1706480 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1706479 1706480 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1706481 1706733 . + . KQ414915.1 exonerate:protein2genome:local exon 1706481 1706733 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1706734 1706735 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1706734 1706999 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1706998 1706999 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707000 1707088 . + . KQ414915.1 exonerate:protein2genome:local exon 1707000 1707088 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1707089 1707090 . + . intron_id 3 ; splice_site "TT" KQ414915.1 exonerate:protein2genome:local intron 1707089 1707379 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 3 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 5 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 5 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 4 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709249 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709249 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1704895 1709249 1027 + . alignment_id 1 ; Query gi|350425958|ref|XP_003494287.1| ; Align 1704895 1 195 ; Align 1706481 66 252 ; Align 1707002 151 66 ; Align 1707068 174 21 ; Align 1707380 181 42 ; Align 1707425 195 279 ; Align 1708161 289 276 ; Align 1709196 381 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 610 Query range: 0 -> 224 Target range: 1692073 -> 1694983 1 : MetSerSerLysLysGlyArgAspLeuSerIleThrValValSerPheTyrMetLy : 19 ||| !! ! !:!!.!!!:!|||:!!||||||..! ! !! !|||! ||||| MetHisLeuValGlnSerLysAspIleSerIleValTrpSerPhePheLeuMetLy 1692074 : ATGCATTTAGTGCAGAGTAAAGATATCTCGATCGTTTGGTCGTTCTTTTTGATGAA : 1692128 20 : sIleValGlyPheTrpLeuAlaLysAsnHisValGluGluArgTrpArgAsnPheA : 38 ||||||||||.!.||||||||| :!!.!.!.!|||:!!||| !!|||||||||| sIleValGlyLeuTrpLeuAlaAlaAspGluAlaGluGlnArgArgArgAsnPheA 1692129 : AATCGTAGGTCTGTGGCTAGCCGCCGACGAGGCTGAACAACGTCGGAGAAATTTCG : 1692185 39 : laMetIleTyrThrThrPheAlaIleLeuValAlaIleValValGluThrArgAsp : 56 ||:!!||||||||| ! !||||||!!!:!!||| !:!!! !! !|||||| laLeuIleTyrThrLeuAsnAlaIlePheIleAlaSerCysIleAlaMetArgAsp 1692186 : CGCTGATTTACACGCTGAACGCGATTTTTATCGCTTCGTGTATAGCAATGAGAGAT : 1692239 57 : LeuTyrPheThrTrpGlyAspPheSer >>>> Target Intron 1 >>>> : 66 :!!|||!:!:!!||||||:!! ! !:! 1732 bp IleTyrTyrSerTrpGlyAsnValAsn++ ++ 1692240 : ATATACTATTCCTGGGGAAACGTGAACgt.........................ag : 1693999 67 : GlyThrValTyrIleValCysAsnLeuValThrIleIleLeuValLeuPheLysIl : 84 ! ! !:!!|||:!!! !||||||:!!:!! !:!! :!!|||!!!|||||||| AspCysIleTyrValGlyCysAsnIleLeuTyrLeuAlaIleValPhePheLysIl 1694000 : GACTGCATTTACGTCGGGTGCAACATTTTATACCTAGCGATCGTTTTCTTCAAGAT : 1694055 85 : eLeuValCysPheValTyrLysLysGluLeuLeuSerLeuIleGlnTyrAlaLysT : 103 |||||||! !:! !:!!!:!! !|||!!!! !.!!||||||::!!:!.!!:!! eLeuValLeuTyrLysHisArgIleGluPheTyrGlyLeuIleArgPheThrGlnG 1694056 : CCTCGTTTTGTACAAGCACAGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAG : 1694112 104 : hrAsnPheTrpHisSerAsnTyrAsnSerHisGluArgMetIleValAspArgCys : 121 !!!.|||||||||! !:!!|||||||||!..|||!:!:!:|||:!!..!..!||| luLysPheTrpHisPheAspTyrAsnSerArgGluLysLeuIleLeuSerGluCys 1694113 : AGAAATTCTGGCATTTCGACTATAATTCACGGGAGAAGTTAATTTTATCCGAGTGC : 1694166 122 : LysArgThrCysThrValLeuValCysValPheThrPhePheAlaGlnGlyThrVa : 140 |||!:!! !|||||||||!!!:!! !!.!|||!:!|||! !.!!||||||||| LysLysIleCysThrValPheIleValAlaPheSerPheCysThrGlnGlyThrCy 1694167 : AAGAAGATATGTACCGTTTTCATCGTTGCCTTCAGCTTCTGTACTCAGGGCACGTG : 1694223 141 : lIleSerTyrValIleGlyProIleGln{A} >>>> Target Intron 2 >> : 150 ! !.!!||||||:!: !|||||| !{|} 100 bp sAlaGlyTyrValValThrProIleLeu{A}++ 1694224 : TGCTGGTTACGTAGTGACACCTATTTTA{g}gt....................... : 1694256 151 : >> {la}AsnIleGlyArgAsnGluThrAsnArgIleLeuProPheAsnIleTrp : 166 {||}|||:!!|||!:!|||:!!:!!.!.|||!!:||||||||||||!!:||| ++{la}AsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTrp 1694257 : ..ag{CA}AATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTGG : 1694401 167 : LeuAsnValProIleCysTyrMetThrProTyrPheGluIleGluPheIleIleGl : 185 :!!:!! !!||| :!!:!!||||||!:!|||:!! ||||||||||| ValAspPhePro---ThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGl 1694402 : GTTGACTTTCCT---ACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACA : 1694455 186 : n >>>> Target Intron 3 >>>> ValLeuCysLeuTyrHisValGlyVa : 194 | 409 bp ..!||||||:!!||||||||||||:! n++ ++ThrLeuCysValTyrHisValGlyIl 1694456 : Ggt.........................agACACTTTGCGTGTACCATGTCGGTAT : 1694891 195 : lCysTyrLeuCysPheAspAsnIleLeuCysIleMetAsnLeuHisThrAlaGlyG : 213 !||||||:!!|||||||||||||||||| !!:!!:!!|||||||||..!||| !| eCysTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrG 1694892 : ATGTTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTC : 1694948 214 : lnPheArgIleLeuGlnTyrArgLeuGluAsnMet : 224 |||||||||||||||||||||||!!! !|||:!! lnPheArgIleLeuGlnTyrArgPheMetAsnLeu 1694949 : AATTTCGTATCCTTCAATACCGATTCATGAATTTG : 1694983 vulgar: gi|350425958|ref|XP_003494287.1| 0 224 . KQ414915.1 1692073 1694983 + 610 M 65 195 5 0 2 I 0 1728 3 0 2 M 84 252 S 0 1 5 0 2 I 0 96 3 0 2 S 1 2 M 20 60 G 1 0 M 14 42 5 0 2 I 0 405 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1692074 1694983 610 + . gene_id 2 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1692074 1692268 . + . KQ414915.1 exonerate:protein2genome:local exon 1692074 1692268 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1692269 1692270 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1692269 1694000 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1693999 1694000 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694001 1694253 . + . KQ414915.1 exonerate:protein2genome:local exon 1694001 1694253 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694254 1694255 . + . intron_id 2 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1694254 1694353 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1694352 1694353 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694354 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694354 1694457 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1694983 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1694983 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1692074 1694983 610 + . alignment_id 2 ; Query gi|350425958|ref|XP_003494287.1| ; Align 1692074 1 195 ; Align 1694001 66 252 ; Align 1694356 151 60 ; Align 1694416 172 42 ; Align 1694867 186 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 495 Query range: 184 -> 394 Target range: 1702013 -> 1703650 185 : GlnValLeuCysLeuTyrHisValGlyValCysTyrLeuCysPheAspAsnIleLe : 203 |||||||||! !||||||||||||||||||||||||:!!||||||||||||:!!|| GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 204 : uCysIleMetAsnLeuHisThrAlaGlyGlnPheArgIleLeuGlnTyrArgLeuG : 222 ||||:!:||||||||||||.!!||| !|||||||||||||||||||||||||||. uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 223 : luAsnMetCysGlyGluAsnAsnAsnGluLys >>>> Target Intron 1 > : 233 .!|||:!! |||!!:!..|||!..:!!:!! 30 bp erAsnLeu---GlyAspThrAsnArgLysGln++ 1702126 : CGAACTTG---GGTGATACGAACAGGAAGCAAgt...................... : 1702157 234 : >>> LeuSerTyrSerIleCysLysTyrMetLysLeuLysThrTyrIleGlnGln : 249 ! ! !!!:!:!! ! |||! ! !!!!|||!.!! !:!!!:!||| -+SerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGln 1702158 : ...tgTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAA : 1702233 250 : HisGlnMetLeuIleGluTyrCysLysLysLeuGluGlnValPheAsnLeuIleVa : 268 ||||||! ! !||| !|||||| ! !:!|||.!.:!!:!!|||!..:!!||||| HisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleVa 1702234 : CATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGT : 1702290 269 : lLeuGlyGlnValSerLeuPheSerLeuLeuMetCysLeuAspGlyTyrLeuValL : 287 |||||||!!.:!! !:!!||||||||||||!!:||||||! !|||!:!! !|||| lLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValL 1702291 : ACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGC : 1702347 288 : euThrGluAspAlaProLeuMetArgArgLeuIlePheLeuPheHis{Il} >>> : 303 ||..! !.!! !!!!:!:..!! !||||||... ||||||{! } euVal------ValArgPheValGluProLeuIleIleLysPheHis{Ar}-+ 1702348 : TCGTG------GTACGTTTCGTTGAACCTttgattattaaatttcat{ag}tt... : 1702393 304 : > Target Intron 2 >>>> {e}ThrGlyCysMetCysGlnLeuLeuMetPh : 313 613 bp {!}..!||| !!:!:||||||||||||:!:|| +-{g}ValGlySerLeuCysGlnLeuLeuLeuPh 1702394 : ......................at{A}GTCGGTAGTCTATGCCAACTATTGCTATT : 1703032 314 : eThrTyrSerCysAspCysLeuIleArgAspSerThrAsnValAlaAsnAlaAlaT : 332 |||||||||||||||| !!||||||..!!!:|||||||||:!!!.!!.!||| !| eThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaIleT 1703033 : TACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGATAT : 1703089 333 : yrLysSerLeuTrpSerPheLeuProMetAspLysTyrGlyLysIleLeuArgArg : 350 || .!!! !|||! ! !||||||||||||||| !|||!:!! ||||||||| yrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArgArg 1703090 : ACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGAAGA : 1703143 351 : AspLeuMetLeuIleIleMetArgSerAsnIleProCysCysLeuThrAlaSerGl : 369 ||||||! :!!:!!|||:!:||||||!..! ! !! !!||||||||||||||||| AspLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSerGl 1703144 : GACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAGCGG : 1703200 370 : yPhePheIleValSerLeuGluThrTyrThrGly >>>> Target Intron 3 : 381 ||||||| !|||||||||||||||! !||| ! 373 bp yPhePheProValSerLeuGluThrCysThrThr++ 1703201 : ATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGgt.................... : 1703238 382 : >>>> IleLeuSerSerAlaAlaSerTyrPheThrLeuLeuArgAsn : 394 :!:||||||!!!||| !|||||||||||||||||||||:!! ++ValLeuSerThrAlaMetSerTyrPheThrLeuLeuArgHis 1703239 : .....agGTGCTCAGTACAGCGATGTCATACTTCACTTTATTAAGGCAC : 1703650 vulgar: gi|350425958|ref|XP_003494287.1| 184 394 . KQ414915.1 1702013 1703650 + 495 M 40 120 G 1 0 M 7 21 5 0 2 I 0 26 3 0 2 M 56 168 G 2 0 M 12 36 S 0 2 5 0 2 I 0 609 3 0 2 S 1 1 M 77 231 5 0 2 I 0 369 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1703650 495 + . gene_id 3 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702014 1702154 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702154 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1702155 1702156 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1702155 1702184 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702183 1702184 . + . intron_id 0 ; splice_site "TG" KQ414915.1 exonerate:protein2genome:local cds 1702185 1702390 . + . KQ414915.1 exonerate:protein2genome:local exon 1702185 1702390 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local splice5 1702391 1702392 . + . intron_id 2 ; splice_site "tt" KQ414915.1 exonerate:protein2genome:local intron 1702391 1703003 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1703002 1703003 . + . intron_id 1 ; splice_site "AT" KQ414915.1 exonerate:protein2genome:local cds 1703004 1703235 . + . KQ414915.1 exonerate:protein2genome:local exon 1703004 1703235 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1703236 1703237 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1703236 1703608 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1703607 1703608 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1703609 1703650 . + . KQ414915.1 exonerate:protein2genome:local exon 1703609 1703650 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1703650 495 + . alignment_id 3 ; Query gi|350425958|ref|XP_003494287.1| ; Align 1702014 185 120 ; Align 1702134 226 21 ; Align 1702185 233 168 ; Align 1702353 291 36 ; Align 1703005 304 231 ; Align 1703609 381 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 436 Query range: 233 -> 393 Target range: 1695037 -> 1696251 234 : SerTyrSerIleCysLysTyrMetLysLeuLysThrTyrIleGlnGlnHisGlnMe : 252 !:!!:!!!!:!! !!..|||:!::!!||||||!:!! !:!:||| ! |||||| AsnPheThrValAspSerTyrLeuGlnLeuLysSerCysValGlnTyrHisGlnAl 1695038 : AATTTCACAGTCGATAGTTACTTACAATTGAAGAGTTGCGTGCAATACCATCAGGC : 1695092 253 : tLeuIleGluTyrCysLysLysLeuGluGlnValPheAsnLeuIleValLeuGlyG : 271 |||! !! ||||||||||||||||||.!.:!!|||:::|||:!!|||||||||| aLeuThrGlyTyrCysLysLysLeuGluAsnIlePheSerLeuLeuValLeuGlyG 1695093 : ACTTACAGGCTATTGCAAAAAGTTGGAGAACATATTTTCGTTGCTTGTGCTTGGAC : 1695149 272 : lnValSerLeuPheSerLeuLeuMetCysLeuAspGlyTyrLeuValLeuThr > : 289 ||||| !!!!.!.:!!:!!:!!:!:||||||! ||||||! !:!!!!! ! lnValLeuPheLeuAlaMetValLeuCysLeuValGlyTyrGlnLeuPheLeu++ 1695150 : AAGTGCTTTTCCTAGCCATGGTACTTTGCCTCGTGGGATATCAGCTATTTCTGgt. : 1695205 290 : >>> Target Intron 1 >>>> GluAspAlaProLeuMetArgArgLeuIle : 298 415 bp !|||:!!|||! ! !|||!.!:!! ! ++ThrAspSerProProSerArgAsnValGly 1695206 : ........................agACAGACTCACCACCTTCGAGAAACGTCGGA : 1695645 299 : PheLeuPheHisIleThrGlyCysMetCysGlnLeuLeuMetPheThrTyrSerCy : 317 !!.:!!.!!:!!:!:.!!||| !:!!|||||||||!!!||||||||||||||||| LeuValLeuAsnLeuAlaGlyThrLeuCysGlnLeuPheMetPheThrTyrSerCy 1695646 : TTGGTACTCAACCTGGCAGGCACTTTGTGTCAACTTTTTATGTTCACGTACAGTTG : 1695702 318 : sAspCysLeuIleArgAspSerThrAsnValAlaAsnAlaAlaTyrLysSerLeuT : 336 |||| !!|||! !|||!!:|||! !:!!|||::!!..|||!.!!:! !!!!! !| sAspGlyLeuThrArgGluSerMetAspValSerArgAlaValPheAlaArgProT 1695703 : CGATGGTTTGACAAGAGAGAGCATGGACGTTAGCAGAGCTGTATTTGCAAGACCGT : 1695759 337 : rpSerPheLeuProMetAspLysTyrGlyLysIleLeuArgArgAspLeuMetLeu : 354 ||:!! !||||||||||||!:! !!||||||! !:!!|||!:!..!:!!:!::!! rpAlaAsnLeuProMetAspArgAsnGlyLysSerValArgGlnSerMetLeuMet 1695760 : GGGCAAATCTGCCAATGGATAGAAATGGGAAAAGTGTGCGACAAAGCATGCTAATG : 1695813 355 : IleIleMetArgSerAsnIleProCysCysLeuThrAlaSerGlyPhePheIleVa : 373 :!:|||||||||||||||! !||||||||||||||||||||||||||| !|| ValIleMetArgSerAsnArgCysCysCysLeuThrAlaSerGlyPhePheProVa 1695814 : GTGATCATGAGGTCGAACAGGTGTTGCTGCTTAACAGCCAGCGGGTTCTTTCCAGT : 1695870 374 : lSerLeuGluThrTyrThrGly >>>> Target Intron 2 >>>> IleLe : 382 |||||||||||||||||||||| 319 bp :!!|| lSerLeuGluThrTyrThrGly++ ++ValLe 1695871 : TTCTCTCGAGACTTACACTGGGgt.........................agGTCCT : 1696216 383 : uSerSerAlaAlaSerTyrPheThrLeuLeuArg : 393 ||||!!!||| !||||||||||||||||||||| uSerThrAlaMetSerTyrPheThrLeuLeuArg 1696217 : CAGCACTGCAATGTCATACTTTACACTACTGAGA : 1696251 vulgar: gi|350425958|ref|XP_003494287.1| 233 393 . KQ414915.1 1695037 1696251 + 436 M 55 165 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1695038 1696251 436 + . gene_id 4 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1695038 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1695038 1695202 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 1 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696251 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696251 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1695038 1696251 436 + . alignment_id 4 ; Query gi|350425958|ref|XP_003494287.1| ; Align 1695038 234 165 ; Align 1695618 289 276 ; Align 1696213 381 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 324 Query range: 147 -> 290 Target range: 1699025 -> 1699977 148 : IleGlnAlaAsnIleGlyArgAsnGluThrAsnArgIleLeuProPheAsnIleTr : 166 ||| !||||||||||||||||||...:!!:!!|||:!:||||||||||||!!:|| IleLeuAlaAsnIleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTr 1699026 : ATTTTAgcaaatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTG : 1699080 167 : pLeuAsnValProIleCysTyrMetThrProTyrPheGlu{Il} >>>> Targe : 180 |:!!:!!:!!|||:!:! ! !! !!||| !{:!} pValAspLeuProLeuSerValSerProThrTyrGluIle{Va}++ 1699081 : GGTTGATTTGCCGCTGTCTGTGTCACCAACGTACGAAATA{GT}gt.......... : 1699126 181 : t Intron 1 >>>> {e}GluPheIleIle<->GlnValLeuCysLeuTyrHis : 191 493 bp {!}!!:|||:!:.!! |||||||||! !||||||||| ++{l}AspPheValPheAlaGlnValLeuSerLeuTyrHis 1699127 : ...............ag{A}GATTTTGTGTTTGCACAGGTTCTGTCTTTGTACCAC : 1699651 192 : ValGlyValCysTyrLeuCysPheAspAsnIleLeuCysIleMetAsnLeuHisTh : 210 |||||||||||||||:!!||||||||||||:!!||||||:!:||||||||||||.! ValGlyValCysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAl 1699652 : GTTGGTGTATGTTACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGC : 1699708 211 : rAlaGlyGlnPheArgIleLeuGlnTyrArgLeuGluAsnMetCysGlyGluAsnA : 229 !||| !|||||||||||||||||||||||||||..!|||:!! |||!!:!..| aAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnLeu---GlyAspThrA 1699709 : GGCTACTCAATTTCGTATACTGCAATACAGGTTATCGAACTTG---GGTGATACGA : 1699762 230 : snAsnGluLysLeuSerTyr{S} >>>> Target Intron 2 >>>> {er} : 236 ||!..:!!:!!:!!..! !!{!} 33 bp {.!} snArgLysGlnValAspAsp{L}-+ -+{ys} 1699763 : ACAGGAAGCAAGTAGATGAC{A}at.........................gg{AG} : 1699817 237 : IleCysLysTyrMetLysLeuLysThrTyrIleGlnGlnHisGlnMetLeuIleGl : 255 ! !||| |||! ! !!!!|||!.!! !:!!!:!|||||||||! ! !||| AsnCys---TyrLysAlaPheLysAsnCysValArgGlnHisGlnAsnHisIleTh 1699818 : AACTGT---TATAAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCATATCAC : 1699870 256 : uTyrCysLysLysLeuGluGlnValPheAsnLeuIleValLeuGlyGlnValSerL : 274 !|||||| ! !:!|||.!.:!!:!!|||!..:!!||||||||||||!!.:!! !: rTyrCysHisArgLeuAsnGluIlePheThrValIleValLeuGlyHisIleLeuV 1699871 : GTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTACTCGGACACATACTTG : 1699927 275 : euPheSerLeuLeuMetCysLeuAspGlyTyrLeuValLeuThrGluAsp : 290 !!||||||||||||!!:||||||! !|||!:!! !||||||..!|||:!! alPheSerLeuLeuIleCysLeuValGlyPheGlnValLeuValGluAsn 1699928 : TCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTCGTAGAAAAC : 1699977 vulgar: gi|350425958|ref|XP_003494287.1| 147 290 . KQ414915.1 1699025 1699977 + 324 M 32 96 S 0 2 5 0 2 I 0 489 3 0 2 S 1 1 M 4 12 G 0 3 M 40 120 G 1 0 M 10 30 S 0 1 5 0 2 I 0 29 3 0 2 S 1 2 M 2 6 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699026 1699977 324 + . gene_id 5 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1699026 1699123 . + . KQ414915.1 exonerate:protein2genome:local exon 1699026 1699123 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699124 1699125 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699124 1699616 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699615 1699616 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699617 1699783 . + . KQ414915.1 exonerate:protein2genome:local exon 1699617 1699783 . + . insertions 3 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1699784 1699785 . + . intron_id 2 ; splice_site "AT" KQ414915.1 exonerate:protein2genome:local intron 1699784 1699816 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1699815 1699816 . + . intron_id 1 ; splice_site "GG" KQ414915.1 exonerate:protein2genome:local cds 1699817 1699977 . + . KQ414915.1 exonerate:protein2genome:local exon 1699817 1699977 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1699026 1699977 324 + . alignment_id 5 ; Query gi|350425958|ref|XP_003494287.1| ; Align 1699026 148 96 ; Align 1699618 181 12 ; Align 1699633 185 120 ; Align 1699753 226 30 ; Align 1699819 237 6 ; Align 1699825 240 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 322 Query range: 294 -> 387 Target range: 1712387 -> 1712666 295 : ArgArgLeuIlePheLeuPheHisIleThrGlyCysMetCysGlnLeuLeuMetPh : 313 !:!!:!:::|||||| ||||||::!.!!|||||||||||||||||||||||||| LysGlnMetIlePheThrPheHisLeuAlaGlyCysMetCysGlnLeuLeuMetPh 1712388 : AAACAGAtgattttcacgtttcacctAGCGGGATGTATGTGTCAATTGCTGATGTT : 1712442 314 : eThrTyrSerCysAspCysLeuIleArgAspSerThrAsnValAlaAsnAlaAlaT : 332 |||||||||||||||||||:!!|||! !!!:||| !||||||.!!.!.|||!.!| eThrTyrSerCysAspCysIleIleThrGluSerLeuAsnValThrGluAlaValT 1712443 : TACGTACAGCTGCGATTGTATAATAACGGAAAGTTTGAACGTGACGGAAGCGGTGT : 1712499 333 : yrLysSerLeuTrpSerPheLeuProMetAspLysTyrGlyLysIleLeuArgArg : 350 || ! .!!! !||| !! !|||||||||..!! ! |||!:!!!::!!|||!:! yrAspGlyProTrpProArgLeuProMetSerThrArgGlyArgMetIleArgLys 1712500 : ACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGAAGAATGATAAGGAAG : 1712553 351 : AspLeuMetLeuIleIleMetArgSerAsnIleProCysCysLeuThrAlaSerGl : 369 ||||||!!:|||:!!|||!!:||||||!..:!!||||||||||||||||||!!!|| AspLeuIleLeuValIleIleArgSerArgValProCysCysLeuThrAlaArgGl 1712554 : GATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTGCTTGACCGCCAGAGG : 1712610 370 : yPhePheIleValSerLeuGluThrTyrThrGlyIleLeuSerSerAlaAlaSer : 387 |||||||:!!:!!|||||||||||||||||| !:!!:!!..!||| !:!!:!! yPhePheValIleSerLeuGluThrTyrThrLysValIleAspSerLeuSerAla 1712611 : ATTCTTCGTAATATCTTTGGAAACGTATACGAAGGTAATTGACTCTCTGTCTGCG : 1712666 vulgar: gi|350425958|ref|XP_003494287.1| 294 387 . KQ414915.1 1712387 1712666 + 322 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712388 1712666 322 + . gene_id 6 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1712388 1712666 . + . KQ414915.1 exonerate:protein2genome:local exon 1712388 1712666 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712388 1712666 322 + . alignment_id 6 ; Query gi|350425958|ref|XP_003494287.1| ; Align 1712388 295 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 273 Query range: 290 -> 398 Target range: 1689474 -> 1690091 291 : AlaProLeuMetArgArgLeuIlePheLeuPheHisIleThrGlyCysMetCysGl : 309 !.!||| !! !! !|||||||||||||||||||||!!:! !||| !!.!. !!. ValProThrThrThrArgLeuIlePheLeuPheHisMetIleGlySerPheIleHi 1689475 : GTACCTACCACGACGCGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCa : 1689529 310 : nLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgAspSerThrAsnValA : 328 .::::::...|||||||||||||||! ! !!||||||..!!!:|||! !:!!:!!| sIleIlePhePheThrTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleA 1689530 : cataattttcttcacgtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTG : 1689586 329 : laAsnAlaAlaTyrLysSerLeuTrpSerPheLeuProMetAspLysTyrGlyLys : 346 ||!..|||.!!||| !.!!:!!|||!!! !!|||||||||:!!||| !|||||| laThrAlaThrTyrAlaGlyMetTrpThrValLeuProMetAsnLysValGlyLys 1689587 : CAACAGCAACGTATGCAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAA : 1689640 347 : IleLeuArgArgAspLeuMetLeuIleIleMetArgSerAsnIleProCysCysLe : 365 !!::!!||| !!:!!:!!! !|||!!:! !:!:|||||| !|||||||||:! MetIleArgGlyAsnMetLysLeuMetThrValArgSerLeuGlnProCysCysIl 1689641 : ATGATACGAGGAAATATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCAT : 1689697 366 : uThrAlaSerGlyPhePheIleValSerLeuGluThrTyrThrGly >>>> Tar : 381 !||||||.!!||||||||| !|||||||||:!!||| !|||!.! eThrAlaGlyGlyPhePheProValSerLeuLysThrAlaThrAla++ 1689698 : AACTGCTGGTGGATTCTTTCCTGTCTCCTTGAAAACTGCTACCGCGgt........ : 1689747 382 : get Intron 1 >>>> IleLeuSerSerAlaAlaSerTyrPheThrLeuLeuA : 393 293 bp :!!:!!||||||.!! !|||||||||||||||:!!| ++LeuMetSerSerThrMetSerTyrPheThrLeuMetA 1689748 : .................agCTAATGAGTTCCACAATGTCGTATTTCACGCTCATGA : 1690074 394 : rgAsnHisAlaSerAsp : 398 ||.!....:!!:!!!!: rgGluArgSerAlaGlu 1690075 : GAGAGAGATCGGCTGAA : 1690091 vulgar: gi|350425958|ref|XP_003494287.1| 290 398 . KQ414915.1 1689474 1690091 + 273 M 90 270 5 0 2 I 0 289 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1689475 1690091 273 + . gene_id 7 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1689475 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689475 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690091 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690091 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1689475 1690091 273 + . alignment_id 7 ; Query gi|350425958|ref|XP_003494287.1| ; Align 1689475 291 270 ; Align 1690038 381 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 264 Query range: 150 -> 284 Target range: 1681725 -> 1682241 151 : AsnIleGlyArgAsnGluThrAsnArgIleLeuProPheAsnIleTrpLeuAsnVa : 169 |||||||||!:!!:!!!: !.!.||||||||||||||| .!! ! :!! ! AsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAs 1681726 : AACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAA : 1681780 170 : lProIleCysTyrMetThrProTyrPheGluIleGluPheIleIleGln >>>> : 186 ! ! ! ! !:!!|||||||||:::|||||| |||:!:|||:!! nLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681781 : CTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt..... : 1681833 187 : Target Intron 1 >>>> ValLeuCysLeuTyrHisValGlyValCysTyrL : 197 120 bp ..!|||! !:!! ||| !|||:!!|||!:!! ++ThrLeuSerValValHisSerGlyIleCysPheC 1681834 : ....................agACATTATCTGTGGTGCATTCGGGAATTTGTTTCT : 1681984 198 : euCysPheAspAsnIleLeuCysIleMetAsnLeuHisThrAlaGlyGlnPheArg : 215 !||||||||||||.!!|||||||||:!!!:!:!!|||..!!.!|||||||||!:! ysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLys 1681985 : GTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAG : 1682038 216 : IleLeuGlnTyrArgLeuGluAsnMetCysGlyGluAsnAsnAsnGluLysLeuSe : 234 ||||||||| !!!:!|||:!!!..:!:! .!!|||!!.:::::::::::: || IleLeuGlnAsnLysLeuGlnThrValLeuSerGluLysSerSerLysGluLysSe 1682039 : ATTTTACAAAACAAACTCCAAACAGTATTGAGTGAGAAatcttcgaaagaaaaatc : 1682095 235 : rTyrSerIleCysLysTyrMetLysLeuLysThrTyrIleGlnGlnHisGlnMetL : 253 | .!!:!: |||! :!!!!!||| !! !:!!||| ! |||!!.:!!| rAlaGlyLeu------TyrLysGluPheLysGluCysValGlnTyrHisHisLeuL 1682096 : agctGGACTG------TATAAAGAGTTCAAGGAGTGCGTACAGTATCATCATTTGC : 1682146 254 : euIleGluTyrCysLysLysLeuGluGlnValPheAsnLeuIleValLeuGlyGln : 271 ||:!!..!||| :::||||||||| |||||| !:!! :!!:!! !||| euLeuSerTyrValGluLysLeuGluTyrValPheCysValProLeuMetIleGln 1682147 : TTCTTTCGtacgtggaaaaattggaatacgTATTTTGTGTCCCGTTGATGATTCAA : 1682200 272 : ValSerLeuPheSerLeuLeuMetCysLeuAspGlyTyr : 284 :!! !:!!! !|||:!!:!!:!!|||:!!...|||!:! LeuLeuValSerSerIleValLeuCysValSerGlyPhe 1682201 : TTGCTGGTGTCTAGCATAGTTCTGTGCGTCTCGGGGTTT : 1682241 vulgar: gi|350425958|ref|XP_003494287.1| 150 284 . KQ414915.1 1681725 1682241 + 264 M 35 105 5 0 2 I 0 116 3 0 2 M 52 156 G 2 0 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681726 1682241 264 + . gene_id 8 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681726 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681726 1681830 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682241 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682241 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local similarity 1681726 1682241 264 + . alignment_id 8 ; Query gi|350425958|ref|XP_003494287.1| ; Align 1681726 151 105 ; Align 1681951 186 156 ; Align 1682107 240 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 231 Query range: 184 -> 287 Target range: 1688334 -> 1688649 185 : GlnValLeuCysLeuTyrHisValGlyValCysTyrLeuCysPheAspAsnIleLe : 203 |||!.!||||||:!!|||!!.:!!|||!.!..!|||:!!|||! !|||!...!!!! GlnAlaLeuCysValTyrGlnIleGlyAlaAlaTyrIleCysSerAspThrPhePh 1688335 : CAGGCGCTGTGCGTGTATCAAATCGGCGCCGCCTATATCTGCTCCGACACGTTTTT : 1688389 204 : uCysIleMetAsnLeuHisThrAlaGlyGlnPheArgIleLeuGlnTyrArgLeuG : 222 !|||!!::!!|||:!!|||..! ! !!|||||||||||||||.!.||||||||| eCysMetLeuAsnMetHisValIleCysGlnPheArgIleLeuAsnTyrArgLeuL 1688390 : CTGCATGCTGAACATGCACGTGATCTGCCAGTTCCGTATACTAAATTACAGACTGT : 1688446 223 : luAsnMetCysGly<-><->GluAsnAsnAsnGluLysLeuSerTyrSerIleCys : 238 !||||||!! ! !!:.!....!...!.! ! !..!|||!!!! ! euAsnMetTrpProValIleAspGluArgThrAsnMetThrGluTyrThrAsnLys 1688447 : TGAACATGTGGCCGGTCATCGACGAGCGAACGAACATGACCGAATACACGAACAAA : 1688500 239 : LysTyrMetLysLeuLysThrTyrIleGlnGlnHisGlnMetLeuIleGluTyrCy : 257 |||! ||||||! ! !! !|||:!!.!.|||||| !|||||||||!:!|| CysTyrThrLysLeuIleAspCysIleLysAsnHisGlnSerLeuIleGluPheCy 1688501 : TGTTACACCAAGCTGATAGATTGCATCAAAAATCATCAGTCGTTGATCGAGTTCTG : 1688557 258 : sLysLysLeuGluGlnValPheAsnLeuIleValLeuGlyGlnValSerLeuPheS : 276 | !|||||||||.!.|||!:!!..|||! !:!!||||||!!.:!! !:!!|||| sValLysLeuGluAsnValTyrThrLeuThrIleLeuGlyHisIleValValPheS 1688558 : CGTGAAACTCGAGAACGTGTACACGTTGACTATACTCGGCCACATAGTGGTCTTCA : 1688614 277 : erLeuLeuMetCysLeuAspGlyTyrLeuValLeu : 287 ||||||||||||||!!!||| !||| !|||:!! erLeuLeuMetCysPheAspThrTyrGluValVal 1688615 : GCTTGTTGATGTGCTTCGACACGTACGAGGTAGTT : 1688649 vulgar: gi|350425958|ref|XP_003494287.1| 184 287 . KQ414915.1 1688334 1688649 + 231 M 42 126 G 0 6 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688335 1688649 231 + . gene_id 9 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1688335 1688649 . + . KQ414915.1 exonerate:protein2genome:local exon 1688335 1688649 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688335 1688649 231 + . alignment_id 9 ; Query gi|350425958|ref|XP_003494287.1| ; Align 1688335 185 126 ; Align 1688467 227 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 231 Query range: 184 -> 287 Target range: 1711882 -> 1712224 185 : GlnValLeuCysLeuTyrHisValGlyValCysTyrLeuCysPheAspAsnIleLe : 203 |||||||||! ! !|||!!.:!!|||||| !!||| !||||||||||||:!!|| GlnValLeuSerAlaTyrGlnIleGlyValSerTyrGlyCysPheAspAsnValLe 1711883 : CAGGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGGTTGCTTCGACAACGTTCT : 1711937 204 : uCysIleMetAsnLeuHisThrAlaGlyGlnPheArgIleLeuGlnTyrArgLeuG : 222 ||||||||||||||||||| !||| !||||||||||||||||||:!!||||||! uCysIleMetAsnLeuHisLeuAlaThrGlnPheArgIleLeuGlnHisArgLeuV 1711938 : ATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAATACTGCAACATAGACTGG : 1711994 223 : luAsnMetCysGlyGluAsnAsnAsnGluLysLeuSerTyr{S} >>>> Targe : 236 !|||!!: !||| !!!.!:!!!.:!!! !! !..! ! {:} alAsnIleAsnGlyLeuLysSerLysGlnThrProGluLys{A}++ 1711995 : TGAATATAAACGGTCTGAAGAGCAAACAGACACCGGAGAAA{G}gt.......... : 1712039 237 : t Intron 1 >>>> {er}IleCysLysTyrMetLysLeuLysThrTyrIleGl : 248 33 bp {!!} ! !...||| !!!|||! !! !:!!!: -+{la}AspAsnSerTyrAspValPheLysArgCysValAr 1712040 : ...............tg{CG}GATAACTCTTACGACGTTTTCAAAAGATGCGTTCG : 1712105 249 : nGlnHisGlnMetLeuIleGluTyrCysLysLysLeuGluGlnValPheAsnLeuI : 267 :||||||||| |||!!:! !:!|||:::|||||||||::::::|||!:!:!!| gGlnHisGlnSerLeuMetAlaPheCysGluLysLeuGluGluMetPheSerMetI 1712106 : TCAACATCAATCTCTGATGGCTTTCTgcgagaaactcgaagaaatgTTCAGTATGA : 1712162 268 : leValLeuGlyGlnValSerLeuPheSerLeuLeuMetCysLeuAspGlyTyrLeu : 285 ||:!!|||||||||:!!! !:!!||||||:!!!!!||||||||||||! !! !! ! leIleLeuGlyGlnLeuLeuValPheSerIlePheMetCysLeuAspValCysGln 1712163 : TTATACTGGGGCAATTGTTAGTGTTCAGTATTTTTATGTGTCTCGACGTGTGCCAA : 1712216 286 : ValLeu : 287 |||||| ValLeu 1712217 : GTACTT : 1712224 vulgar: gi|350425958|ref|XP_003494287.1| 184 287 . KQ414915.1 1711882 1712224 + 231 M 51 153 S 0 1 5 0 2 I 0 29 3 0 2 S 1 2 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711883 1712224 231 + . gene_id 10 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1711883 1712036 . + . KQ414915.1 exonerate:protein2genome:local exon 1711883 1712036 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712037 1712038 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712037 1712069 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1712068 1712069 . + . intron_id 0 ; splice_site "TG" KQ414915.1 exonerate:protein2genome:local cds 1712070 1712224 . + . KQ414915.1 exonerate:protein2genome:local exon 1712070 1712224 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711883 1712224 231 + . alignment_id 10 ; Query gi|350425958|ref|XP_003494287.1| ; Align 1711883 185 153 ; Align 1712072 237 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 210 Query range: 67 -> 148 Target range: 1698553 -> 1698796 68 : ValTyrIleValCysAsnLeuValThrIleIleLeuValLeuPheLysIleLeuVa : 86 !.!|||! !!.!||||||:!!:!! !:!:|||:!!||||||!!.|||:!:!!!|| AlaTyrThrAlaCysAsnIleLeuCysLeuIleMetValLeuLeuLysLeuPheVa 1698554 : GCTTACACCGCTTGTAACATTCTCTGCCTGATTATGGTACTGTTAAAGCTGTTCGT : 1698608 87 : lCysPheValTyrLysLysGluLeuLeuSerLeuIleGlnTyrAlaLysThrAsnP : 105 | |||:!!:!!!:!||||||!!!:!!..!|||::: ||| |||| lValPheIleHisArgLysGluPheIleGluLeuLeuValTyrMetTyrLysAsnP 1698609 : TGTATTCATACACAGGAAAGAATTCATCGAACTgcttgtatatatgtacaaaaatt : 1698665 106 : heTrpHisSerAsnTyrAsnSerHisGluArgMetIleValAspArgCysLysArg : 123 |||||||| !||||||:!!!!!:!!|||! !:!::!::!!.!. !|||!:!||| heTrpHisLeuAsnTyrAspCysAsnGluLeuLeuLeuLeuGlnAspCysArgArg 1698666 : tttggcACCTCAATTACGATTGCAACGAACTACTACTGCTGCAAGACTGCAGAAGA : 1698719 124 : ThrCysThrValLeuValCysValPheThrPhePheAlaGlnGlyThrValIleSe : 142 ! ! !!|||:!!! !:!! :!!.!!!.!|||! !||||||||||||:!!:!!|| IleSerThrIleCysIleThrLeuIleAsnPheCysAlaGlnGlyThrIleValSe 1698720 : ATTAGCACTATATGTATCACGTTGATTAACTTCTGTGCTCAAGGCACAATTGTCAG : 1698776 143 : rTyrValIleGlyProIle : 148 |||||||:!! !|||||| rTyrValLeuThrProIle 1698777 : CTACGTGCTAACACCTATT : 1698796 vulgar: gi|350425958|ref|XP_003494287.1| 67 148 . KQ414915.1 1698553 1698796 + 210 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1698554 1698796 210 + . gene_id 11 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1698554 1698796 . + . KQ414915.1 exonerate:protein2genome:local exon 1698554 1698796 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1698554 1698796 210 + . alignment_id 11 ; Query gi|350425958|ref|XP_003494287.1| ; Align 1698554 68 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 187 Query range: 0 -> 64 Target range: 1700446 -> 1700638 1 : MetSerSerLysLysGlyArgAspLeuSerIleThrValValSerPheTyrMetLy : 19 |||!!!|||||||||..!||||||:!!|||:!:!:!|||..!:!!||||||:!!|| MetThrSerLysLysAsnArgAspValSerValSerValThrAlaPheTyrLeuLy 1700447 : ATGACTTCGAAGAAGAACAGGGACGTATCAGTGAGCGTCACAGCTTTCTACTTGAA : 1700501 20 : sIleValGlyPheTrpLeuAlaLysAsnHisValGluGluArgTrpArgAsnPheA : 38 ||||:!!||||||||||||||| ! !.!:!!! !|||:!!||| ! |||!!.|||| sIleIleGlyPheTrpLeuAlaAspThrTyrGluGluLysArgArgArgLysPheA 1700502 : AATCATCGGCTTCTGGTTAGCTGACACTTACGAGGAGAAACGTCGAAGAAAGTTCG : 1700558 39 : laMetIleTyrThrThrPheAlaIleLeuValAlaIleValValGluThrArgAsp : 56 ||..!! !! !|||! !.!! !:!!:!! !|||:!::!!:!!|||..!|||||| laGlnAsnCysThrIleLeuMetLeuMetCysAlaValLeuLeuGluValArgAsp 1700559 : CGCAGAATTGCACGATACTTATGCTTATGTGCGCTGTGCTGCTTGAGGTGAGGGAT : 1700612 57 : LeuTyrPheThrTrpGlyAspPhe : 64 :!!||| !! !|||||||||||| IleTyrHisIleTrpGlyAspPhe 1700613 : ATCTATCACATCTGGGGAGATTTC : 1700638 vulgar: gi|350425958|ref|XP_003494287.1| 0 64 . KQ414915.1 1700446 1700638 + 187 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1700447 1700638 187 + . gene_id 12 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1700447 1700638 . + . KQ414915.1 exonerate:protein2genome:local exon 1700447 1700638 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1700447 1700638 187 + . alignment_id 12 ; Query gi|350425958|ref|XP_003494287.1| ; Align 1700447 1 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 66 -> 155 Target range: 1710866 -> 1711133 67 : ThrValTyrIleValCysAsnLeuValThrIleIleLeuValLeuPheLysIleLe : 85 |||:!!!:! !:!!|||!.!|||:!!:!!:!:|||:!! ! !.!!||||||:! ThrLeuPheAspIleCysThrLeuLeuSerValIleMetProAlaIleLysIleIl 1710867 : ACACTGTTCGACATATGCACTCTTCTGTCGGTGATAATGCCCGCTATCAAAATAAT : 1710921 86 : uValCysPheValTyrLysLysGluLeuLeuSerLeuIleGlnTyrAlaLysThrA : 104 !:!! |||:!! !!|||:!!|||!!!!!! !!|||||| !|||.!!:!! !. eIleLeuPheIleAsnLysGluGluPhePheArgLeuIleValTyrThrGluArgG 1710922 : CATCCTGTTTATCAACAAGGAGGAGTTTTTCCGTTTGATCGTGTACACAGAGCGAC : 1710978 105 : snPheTrpHisSerAsnTyrAsnSerHisGluArgMetIleValAspArgCysLys : 122 !.||| !:!!.!!:!!||||||..! !!||||||! !|||||| ! !|||||| lnPheMetAsnGlyAspTyrAsnGluAspGluArgLysIleValPheAspCysLys 1710979 : AATTCATGAACGGGGATTACAACGAGGACGAGAGGAAGATTGTGTTCGATTGTAAA : 1711032 123 : ArgThrCysThrValLeuValCysValPheThrPhePheAlaGlnGlyThrValIl : 141 ||| !|||||| !!!!!..!||| !!.!!:!!! ! ! .!! !..! !|||:! ArgLeuCysThrPhePheThrCysPheLeuSerSerValThrLeuSerCysValLe 1711033 : CGCCTGTGTACATTCTTCACTTGTTTCCTCTCATCTGTGACTTTATCGTGCGTTCT : 1711089 142 : eSerTyrValIleGlyProIleGlnAlaAsnIleGlyArgAsn : 155 !|||||||||:!! !|||||| ! ::!!!.:!: !!:!::! uSerTyrValValThrProIleTyrSerLysLeuThrLysSer 1711090 : CTCTTACGTCGTCACTCCAATTTACAGTAAGCTGACTAAATCC : 1711133 vulgar: gi|350425958|ref|XP_003494287.1| 66 155 . KQ414915.1 1710866 1711133 + 174 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1710867 1711133 174 + . gene_id 13 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1710867 1711133 . + . KQ414915.1 exonerate:protein2genome:local exon 1710867 1711133 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1710867 1711133 174 + . alignment_id 13 ; Query gi|350425958|ref|XP_003494287.1| ; Align 1710867 67 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 63 -> 148 Target range: 1687371 -> 1687626 64 : PheSerGlyThrValTyrIleValCysAsnLeuValThrIleIleLeuValLeuPh : 82 |||... ! !:!!!:!:!:..!|||||| !:!! !|||:!!|||!.!:!!|| PheGlnHisCysIlePheLeuThrCysAsnThrLeuCysIleLeuLeuAlaIlePh 1687372 : tttcagcATTGCATCTTTCTGACTTGCAACACACTGTGCATTCTTCTGGCGATATT : 1687426 83 : eLysIleLeuValCysPheValTyrLysLysGluLeuLeuSerLeuIleGlnTyrA : 101 |||||||!!!:!! ! !:!!!:!! !|||!!! !..!:!!:!! !|||| eLysIlePheIleLeuSerAsnHisArgThrGluPheLysGluIleValLeuTyrA 1687427 : TAAGATTTTCATACTAAGCAATCACAGAACGGAATTCAAGGAGATAGTCTTGTACG : 1687483 102 : laLysThrAsnPheTrpHisSerAsnTyrAsnSerHisGluArgMetIleValAsp : 119 ||:!!! !:!!|||||||||..!||||||!:!!.!.!.||||||:!!:!! !! laGlnLysHisPheTrpHisAspAsnTyrSerLysGluGluArgValLeuTyrGly 1687484 : CGCAGAAGCATTTTTGGCATGATAATTACAGCAAAGAGGAGAGGGTGCTTTATGGA : 1687537 120 : ArgCysLysArgThrCysThrValLeuValCysValPheThrPhePheAlaGlnGl : 138 !|||:!!||| !|||! !:!!! !||| :!!.!. !|||.!!.!!|||!. AspCysGlnArgPheCysLysLeuTrpValIleLeuIleCysPheLeuThrGlnAl 1687538 : GATTGCCAGAGGTTCTGCAAACTATGGGTCATACTAATATGTTTCCTTACGCAAGC : 1687594 139 : yThrValIleSerTyrValIleGlyProIle : 148 !:!!:!!:!:! !||| !!:!! !|||:!! aSerLeuValPheTyrPheValThrProLeu 1687595 : CTCTTTAGTGTTCTACTTTGTCACACCACTC : 1687626 vulgar: gi|350425958|ref|XP_003494287.1| 63 148 . KQ414915.1 1687371 1687626 + 171 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1687372 1687626 171 + . gene_id 14 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1687372 1687626 . + . KQ414915.1 exonerate:protein2genome:local exon 1687372 1687626 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1687372 1687626 171 + . alignment_id 14 ; Query gi|350425958|ref|XP_003494287.1| ; Align 1687372 64 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 147 -> 188 Target range: 1711228 -> 1711348 148 : IleGlnAlaAsnIleGlyArgAsnGluThrAsnArgIleLeuProPheAsnIleTr : 166 :!!..!!.!||||||||||||||||||:!!:!!|||||||||||||||!!.!!:|| ValSerValAsnIleGlyArgAsnGluSerAspArgIleLeuProPheLysMetTr 1711229 : GTTTCAGTGAATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTG : 1711283 167 : pLeuAsnValProIleCysTyrMetThrProTyrPheGluIleGluPheIleIleG : 185 |:!!:!!:!!|||! !! ||||||||||||||||||||| ||| :!!| pIleAspIleProThrSer---MetThrProTyrPheGluIlePhePheThrLeuG 1711284 : GATTGATATACCGACATCG---ATGACACcgtattttgaaatattcttcaccTTAC : 1711337 186 : lnValLeuCys : 188 |||||! !||| lnValHisCys 1711338 : AGGTACATTGT : 1711348 vulgar: gi|350425958|ref|XP_003494287.1| 147 188 . KQ414915.1 1711228 1711348 + 126 M 25 75 G 1 0 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711229 1711348 126 + . gene_id 15 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1711229 1711348 . + . KQ414915.1 exonerate:protein2genome:local exon 1711229 1711348 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1711229 1711348 126 + . alignment_id 15 ; Query gi|350425958|ref|XP_003494287.1| ; Align 1711229 148 75 ; Align 1711304 174 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350423776|ref|XP_003493588.1| PREDICTED: odorant receptor 67c-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 192 -> 294 Target range: 1677575 -> 1677887 193 : GlnValMetThrAlaMetIleGlyLeuSerAlaIleThrAlaIleAspCysThrPh : 211 |||:!!.!. !..!||| ! !||| !..! !! !!.!.!!|||...:!! GlnIlePheLeuCysMetTyrLeuLeuLeuCysTyrIleGlyPheAspAlaSerAl 1677576 : caGATTTTCCTCTGCATGTACTTGTTGCTATGCTACATCGGTTTCGACGCGTCAGC : 1677630 212 : eMetThrMetIleLeuHisValSerGlyGlnPheIleLeuIleLysThrTrpIleA : 230 ..!:!!|||:!!|||!.!:!!!.! !!|||! !:!!:!! ! !:!:: aCysValLeuIleIleHisAlaAlaAla***PheArgIleLeuGlyArgLeuLeuS 1677631 : GTGTGTGCTGATAATACACGCGGCCGCATAATTCAGAATACTTGGCCGACTGCTGT : 1677687 231 : snLysIle<->GlyPheGluMetSerHisLysSerIleAspMetAspLysPheGlu : 247 :: ! ||| ! |||:!:! ! !!|||..!|||..!!!:.!.||| ! erTyrIlePheThrGluGluLeuTyrAspLysGluIleSerIleGlnLysGlnMet 1677688 : CATATATTTTCACCGAGGAACTTTACGATAAAGAGATTAGCATACAGAAGCAAATG : 1677741 248 : GluAspLeuPhe<->LysCysIleArgHisHisGlnArgMetIleHisValValAs : 265 ..!... ||| ||||||:!:|||!..||| ! !:!:||| !! !|||.! SerGlnLysPheGluLysCysLeuArgArgHisTyrLeuLeuIleAspTyrValGl 1677742 : TCGcagaaattcgagaaatgcTTGCGTCGACACTATTTGCTCATTGACTACGTAGA : 1677798 266 : nAspValAsnAsnLeuLeuThrProIleIlePheMetGlnLeuLeuThrSerGlyL : 284 .::::::|||||||||..!! ! !! !:!!.!.:!:|||:!!:!!||||||.!!| uGluLeuAsnAsnLeuPheLysTyrThrLeuLeuLeuGlnMetMetThrSerSerL 1677799 : GgaattgaataatttgttCAAATACACCCTTCTGTTACAGATGATGACCTCGAGTT : 1677855 285 : euGluIleCysLeuSerGlyTyrAlaMetLeu : 294 || !||||||:!!|||||||||! ! ||| euLeuIleCysMetSerGlyTyrGluCysLeu 1677856 : TGTTAATCTGTATGTCTGGTTACGAATGTTTA : 1677887 vulgar: gi|350423776|ref|XP_003493588.1| 192 294 . KQ414915.1 1677575 1677887 + 113 M 40 120 G 0 3 M 19 57 G 0 3 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1677576 1677887 113 + . gene_id 1 ; sequence gi|350423776|ref|XP_003493588.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1677576 1677887 . + . KQ414915.1 exonerate:protein2genome:local exon 1677576 1677887 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1677576 1677887 113 + . alignment_id 1 ; Query gi|350423776|ref|XP_003493588.1| ; Align 1677576 193 120 ; Align 1677699 233 57 ; Align 1677759 252 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425429|ref|XP_003494119.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 771 Query range: 61 -> 407 Target range: 1710851 -> 1713339 62 : LeuTyrLysGlyAspIleLeuTyrValThrThrAsnIleLeuThrValIleMetGl : 80 ||| !..! !|||! !|||!:!! !! ! !!.!:!!|||:!!||||||||| LeuIleSerGlnAspThrLeuPheAspIleCysThrLeuLeuSerValIleMetPr 1710852 : CTCATTTCACAGGACACACTGTTCGACATATGCACTCTTCTGTCGGTGATAATGCC : 1710906 81 : yLeuIleLysIleCysIleIleLeuMetHisLysArgGluPheIleSerLeuIleT : 99 ! !||||||||| !|||:!:!!!!!::!!|||..!||||||.!! !!||||||. oAlaIleLysIleIleIleLeuPheIleAsnLysGluGluPhePheArgLeuIleV 1710907 : CGCTATCAAAATAATCATCCTGTTTATCAACAAGGAGGAGTTTTTCCGTTTGATCG : 1710963 100 : hrTyrThrGlnArgAsnPheTrpAsnValAsnTyrAspThrArgGluLysGluIle : 117 .!||||||:!!|||.!.||| !|||! !:!!|||:!! ! !|||!:!:!!||| alTyrThrGluArgGlnPheMetAsnGlyAspTyrAsnGluAspGluArgLysIle 1710964 : TGTACACAGAGCGACAATTCATGAACGGGGATTACAACGAGGACGAGAGGAAGATT : 1711017 118 : LeuLysAsnCysArgLysThrCysThrPhePheValCysSerValSerAlaIleGl : 136 :!! :!!|||!:!::: !||||||||||||..!|||! !:!!|||:!!:!: ValPheAspCysLysArgLeuCysThrPhePheThrCysPheLeuSerSerValTh 1711018 : GTGTTCGATTGTAAACGCCTGTGTACATTCTTCACTTGTTTCCTCTCATCTGTGAC : 1711074 137 : yIleCysAlaMetLeuAlaTyrLeuSerThrProLeuIle{T} >>>> Target : 150 !:!!! ..!:!:|||:!!|||:!! !||||||:!! !{!} 1 rLeuSerCysValLeuSerTyrValValThrProIleTyr{M}++ 1711075 : TTTATCGTGCGTTCTCTCTTACGTCGTCACTCCAATTTAC{A}gt........... : 1711119 151 : Intron 1 >>>> {hr}AsnAlaGlyLysAsnLysSerGluArgIleLeuPro : 162 19 bp { !}||| !|||!:!|||:!!|||!!:|||||||||||| ++{et}AsnIleGlyArgAsnGluSerAspArgIleLeuPro 1711120 : ..............ag{TG}AATATTGGAAGAAACGAATCCGACAGAATACTGCCG : 1711271 163 : PheAsnValTrpLeuAsnLeuProValSerIleSerProTyrTyrGluIleGlyPh : 181 |||!!.:!!|||:!!:!!:!!|||..!|||!!:!!!||||||:::|||||| || PheLysMetTrpIleAspIleProThrSerMetThrProTyrPheGluIlePhePh 1711272 : TTTAAAATGTGGATTGATATACCGACATCGATGACACcgtattttgaaatattctt : 1711328 182 : eLeuIleGln >>>> Target Intron 2 >>>> ThrIleSerLeuTyrTy : 190 | :!!||| 546 bp ..!:!!||| !||| ! eThrLeuGln++ ++ValLeuSerAlaTyrGl 1711329 : caccTTACAGgt.........................agGTTTTATCCGCGTATCA : 1711901 191 : rIleAlaValSerTyrPheCysPheAspAsnValPheCysIleLeuAlaValHisL : 209 |||!.!||||||||| !|||||||||||||||.!.||||||:!! !:!!|||| nIleGlyValSerTyrGlyCysPheAspAsnValLeuCysIleMetAsnLeuHisL 1711902 : AATTGGCGTGAGTTACGGTTGCTTCGACAACGTTCTATGCATCATGAACCTACACT : 1711958 210 : euThrGlyGlnPheArgIleLeuArgTyrArgPheAlaLysLeuCysAspMetGlu : 227 ||.!! !|||||||||||||||!:!:!!|||.!.!.!!!.:!! !! !:!!:!! euAlaThrGlnPheArgIleLeuGlnHisArgLeuValAsnIleAsnGlyLeuLys 1711959 : TGGCCACTCAGTTTCGAATACTGCAACATAGACTGGTGAATATAAACGGTCTGAAG : 1712012 228 : HisGlnIleThrGluGlu<-><->AspThrGlyLeuMet<->IleThrLysHisVa : 243 !:!! ||| !||| !!:|||..!:!!!!: |||:!! !!. SerLysGlnThrProGluLysGlyGluThrSerIleIleAspSerThrGluPheAl 1712013 : AGCAAACAGACACCGGAGAAAGGTGAAACGTCGATTATAGATTCGACAGAATTTGC : 1712069 244 : lHisThrPheTyrGluGlnLeuLysLeuTyrIleArgGlnHisGlnThrLeuIleA : 262 ! !!!.!! !|||!!: !!!||| !! !:!!||||||||||||:!!|||!!:! aAspAsnSerTyrAspValPheLysArgCysValArgGlnHisGlnSerLeuMetA 1712070 : GGATAACTCTTACGACGTTTTCAAAAGATGCGTTCGTCAACATCAATCTCTGATGG : 1712126 263 : spPheCysAsnArgLeuGluAspValTyrThrMetLeuIlePheGlyGlnValLeu : 280 !||||||...:::||||||::::::!:!!:!|||:!!|||.!.||||||:!!||| laPheCysGluLysLeuGluGluMetPheSerMetIleIleLeuGlyGlnLeuLeu 1712127 : CTTTCTgcgagaaactcgaagaaatgTTCAGTATGATTATACTGGGGCAATTGTTA : 1712180 281 : ValPheSerValLeuIleCysLeuPheAlaTyrGlnGlyLeuVal >>>> Targ : 296 |||||||||:!!!!!!!:|||||| !!.!! !|||! !|||:!! ValPheSerIlePheMetCysLeuAspValCysGlnValLeuLeu++ 1712181 : GTGTTCAGTATTTTTATGTGTCTCGACGTGTGCCAAGTACTTCTGgt......... : 1712230 297 : et Intron 3 >>>> ValAlaAlaProPheAlaArgArgSerIlePheValPh : 308 142 bp !!.!||| !! ! !.!!:!!:!! ||||||...|| ++ProGlyAlaSerValGlyLysGlnMetIlePheThrPh 1712231 : ................agCCAGGTGCATCTGTGGGTAAACAGAtgattttcacgtt : 1712406 309 : eLeuLeuValGlySerMetAlaLeuLeuPheMetPheThrTyrSerCysAspGlyV : 327 | |||!.!|||!!!|||..!! !|||.!.||||||||||||||||||||| !!: eHisLeuAlaGlyCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysI 1712407 : tcacctAGCGGGATGTATGTGTCAATTGCTGATGTTTACGTACAGCTGCGATTGTA : 1712463 328 : alIleGluHisSerGluLysValAlaIleGlyAlaTyrSerAlaLeuTrpThrIle : 345 !!||| !.!.||| !!!.|||.!! !!.!!.!|||..!!.!! !||| !! ! leIleThrGluSerLeuAsnValThrGluAlaValTyrAspGlyProTrpProArg 1712464 : TAATAACGGAAAGTTTGAACGTGACGGAAGCGGTGTACGATGGACCATGGCCACGT : 1712517 346 : MetProMetAsnLysProGlyArgMetLeuArgAsnAspLeuIleMetValIleGl : 364 :!!||||||!:!! ! !|||||||||:!!|||!!.|||||||||:!:|||||| LeuProMetSerThrArgGlyArgMetIleArgLysAspLeuIleLeuValIleIl 1712518 : TTGCCAATGAGCACGAGAGGAAGAATGATAAGGAAGGATTTGATACTCGTTATCAT : 1712574 365 : uArgSerArgArgValCysCysLeuThrAlaAsnAsnPhePheProValSerLeuG : 383 !||||||||| ! !|||||||||||||||!.....|||||| !:!!||||||| eArgSerArgValProCysCysLeuThrAlaArgGlyPhePheValIleSerLeuG 1712575 : AAGATCGAGAGTACCTTGTTGCTTGACCGCCAGAGGATTCTTCGTAATATCTTTGG : 1712631 384 : luThrTyrThrThr >>>> Target Intron 4 >>>> IleLeuSerThrA : 392 |||||||||||! ! 634 bp :!!:!!||||||| luThrTyrThrLys++ ++ValIleSerThrA 1712632 : AAACGTATACGAAGgt.........................agGTTATAAGTACAG : 1713292 393 : laValSerTyrPheThrLeuLeuArgAsnAsnValGluAspLysAsn : 407 ||||||||||||||||||||||||||.!...!:!!|||!!:!..||| laValSerTyrPheThrLeuLeuArgGlnArgIleGluGluSerAsn 1713293 : CAGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAGGAAAGCAAT : 1713339 vulgar: gi|350425429|ref|XP_003494119.1| 61 407 . KQ414915.1 1710851 1713339 + 771 M 88 264 S 0 1 5 0 2 I 0 115 3 0 2 S 1 2 M 34 102 5 0 2 I 0 542 3 0 2 M 49 147 G 0 6 M 5 15 G 0 3 M 57 171 5 0 2 I 0 138 3 0 2 M 92 276 5 0 2 I 0 630 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1710852 1713339 771 + . gene_id 1 ; sequence gi|350425429|ref|XP_003494119.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1710852 1711116 . + . KQ414915.1 exonerate:protein2genome:local exon 1710852 1711116 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711117 1711118 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711117 1711235 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711234 1711235 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711236 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711236 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712227 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712228 1712229 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712228 1712369 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1712368 1712369 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1712370 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712370 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713339 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1710852 1713339 771 + . alignment_id 1 ; Query gi|350425429|ref|XP_003494119.1| ; Align 1710852 62 264 ; Align 1711238 151 102 ; Align 1711886 185 147 ; Align 1712039 234 15 ; Align 1712057 239 171 ; Align 1712370 296 276 ; Align 1713280 388 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425429|ref|XP_003494119.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 604 Query range: 147 -> 402 Target range: 1694346 -> 1696257 148 : LeuIleThrAsnAlaGlyLysAsnLysSerGluArgIleLeuProPheAsnValTr : 166 !!!:!!.!!|||!.!|||||||||:!!|||||||||!!:||||||||||||:!!|| PheLeuAlaAsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTr 1694347 : TTTTTAGCAAATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTG : 1694401 167 : pLeuAsnLeuProValSerIleSerProTyrTyrGluIleGlyPheLeuIleGln : 185 |:!!:!!!!!|||..!.!!:!:|||||||||||||||:!! !|||:!!|||||| pValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGln+ 1694402 : GGTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGg : 1694458 186 : >>>> Target Intron 1 >>>> ThrIleSerLeuTyrTyrIleAlaValS : 194 409 bp |||:!!!!!:!!|||:!!:!!!.!:!!! + ++ThrLeuCysValTyrHisValGlyIleC 1694459 : t.........................agACACTTTGCGTGTACCATGTCGGTATAT : 1694894 195 : erTyrPheCysPheAspAsnValPheCysIleLeuAlaValHisLeuThrGlyGln : 212 !!|||.!.||||||||||||:!!.!! !!:!!||| !:!!|||:!!.!! !||| ysTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGln 1694895 : GTTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAA : 1694948 213 : PheArgIleLeuArgTyrArgPheAlaLysLeuCysAsp<->MetGluHisGlnIl : 230 ||||||||||||!:!||||||||| !!!.||| !!:!! !!:||| ! |||! PheArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLysGlnTh 1694949 : TTTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAAC : 1695005 231 : eThrGluGluAspThrGlyLeuMetIleThrLysHisValHisThrPheTyrGluG : 249 ! !! ...::: ::: !|||!!. !..! ! ! !||| !| rAspGlyArgGluLeuGluIleGlyTyrThrAsnPheThrValAspSerTyrLeuG 1695006 : AGACGGTcgagaattggaaattggtTACACAAATTTCACAGTCGATAGTTACTTAC : 1695062 250 : lnLeuLysLeuTyrIleArgGlnHisGlnThrLeuIleAspPheCysAsnArgLeu : 267 |||||||| !! !:!:!:! ! ||||||.!!|||! !! !!:!|||!!.!:!||| lnLeuLysSerCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeu 1695063 : AATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTG : 1695116 268 : GluAspValTyrThrMetLeuIlePheGlyGlnValLeuValPheSerValLeuIl : 286 |||:!!:!!!:!:!!:!!|||:!:.!!|||||||||||| !!.!.:!!:!!:!!:! GluAsnIlePheSerLeuLeuValLeuGlyGlnValLeuPheLeuAlaMetValLe 1695117 : GAGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTACT : 1695173 287 : eCysLeuPheAlaTyrGlnGlyLeuVal >>>> Target Intron 2 >>>> : 296 !|||||| ! !.!|||||| !!!!:!! 415 bp uCysLeuValGlyTyrGlnLeuPheLeu++ + 1695174 : TTGCCTCGTGGGATATCAGCTATTTCTGgt.........................a : 1695616 297 : ValAlaAlaProPheAlaArgArgSerIlePheValPheLeuLeuValGlySerM : 314 ..!! !:!!||| !:!!|||!.! ! !!!.|||.!! !|||!.!|||!!!: +ThrAspSerProProSerArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrL 1695617 : gACAGACTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTT : 1695672 315 : etAlaLeuLeuPheMetPheThrTyrSerCysAspGlyValIleGluHisSerGlu : 332 !!..!! !||||||||||||||||||||||||||||||:!!! !..!.!.||| ! euCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGluSerMet 1695673 : TGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATG : 1695726 333 : LysValAlaIleGlyAlaTyrSerAlaLeuTrpThrIleMetProMetAsnLysPr : 351 ! |||::!! !!.!!.!!:!:!! !! !|||.!!! !:!!||||||:!!!:! AspValSerArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAspArgAs 1695727 : GACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAA : 1695783 352 : oGlyArgMetLeuArgAsnAspLeuIleMetValIleGluArgSerArgArgValC : 370 !|||!:!! :!!|||.!...!:!!:!!||||||||| !||||||!.!||| !| nGlyLysSerValArgGlnSerMetLeuMetValIleMetArgSerAsnArgCysC 1695784 : TGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTT : 1695840 371 : ysCysLeuThrAlaAsnAsnPhePheProValSerLeuGluThrTyrThrThr > : 388 ||||||||||||||!:!...|||||||||||||||||||||||||||||| ! ysCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrGly++ 1695841 : GCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGgt. : 1695896 389 : >>> Target Intron 3 >>>> IleLeuSerThrAlaValSerTyrPheThr : 397 319 bp :!!||||||||||||:!!|||||||||||| ++ValLeuSerThrAlaMetSerTyrPheThr 1695897 : ........................agGTCCTCAGCACTGCAATGTCATACTTTACA : 1696240 398 : LeuLeuArgAsnAsn : 402 |||||||||.!.::: LeuLeuArgGlnSer 1696241 : CTACTGAGACAATCG : 1696257 vulgar: gi|350425429|ref|XP_003494119.1| 147 402 . KQ414915.1 1694346 1696257 + 604 M 37 111 5 0 2 I 0 405 3 0 2 M 41 123 G 0 3 M 70 210 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694347 1696257 604 + . gene_id 2 ; sequence gi|350425429|ref|XP_003494119.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694347 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694347 1694457 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 2 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696257 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696257 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694347 1696257 604 + . alignment_id 2 ; Query gi|350425429|ref|XP_003494119.1| ; Align 1694347 148 111 ; Align 1694867 185 123 ; Align 1694993 226 210 ; Align 1695618 296 276 ; Align 1696213 388 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425429|ref|XP_003494119.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 526 Query range: 150 -> 400 Target range: 1707001 -> 1709234 151 : AsnAlaGlyLysAsnLysSerGluArgIleLeuProPheAsnValTrpLeuAsnLe : 169 !:: |||||||||:::|||:!:||||||||| ! !!||| !!|||:!!:!!!! SerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAspPh 1707002 : AgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGACTT : 1707056 170 : uProValSerIleSerProTyrTyrGluIleGlyPheLeuIleGln >>>> Tar : 185 !|||..!!!!!!:!!!||||||||||||||| !||| ! ||| eProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707057 : TCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt........ : 1707106 186 : get Intron 1 >>>> ThrIleSerLeuTyrTyrIleAlaValSerTyrPheC : 197 276 bp ..!.!!! !:!! |||:!!..!:!!||||||.!!| ++ValPheIleValMetTyrValCysIleSerTyrLeuC 1707107 : .................agGTTTTTATCGTAATGTACGTTTGCATAAGCTACCTTT : 1707416 198 : ysPheAspAsnValPheCysIleLeuAlaValHisLeuThrGlyGlnPheArgIle : 215 ||.!!|||||| !!.!.|||!!::!! !:!!||| !.!! !|||||||||||| ysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIle 1707417 : GTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATA : 1707470 216 : LeuArgTyrArgPheAlaLysLeuCysAspMetGluHisGlnIleThrGluGluAs : 234 |||!:!||||||.!.:!!!!.:!!|||! ! .!..!.!:: ...::: LeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArg------SerAspLy 1707471 : TTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGT------Agcgataa : 1707521 235 : pThrGlyLeuMetIleThrLysHisValHisThrPheTyrGluGlnLeuLysLeuT : 253 ... !!...:!! ! !! !! !|||! :!!!!!||| !! sIleSerLysLysThrProSerAsnSerAspGluCysTyrAlaLysPheLysAsnC 1707522 : aatttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAAATT : 1707578 254 : yrIleArgGlnHisGlnThrLeuIleAspPheCysAsnArgLeuGluAspValTyr : 271 !|||!:!|||||||||.!!||||||!!:!:!||||||..!|||:!!!!:|||!:! ysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluValPhe 1707579 : GCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGGTGTTC : 1707632 272 : ThrMetLeuIlePheGlyGlnValLeuValPheSerValLeuIleCysLeuPheAl : 290 !:!:!!!:!:.!!!.!|||||||||:!!||||||:!!|||!!:|||||| !!. GlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAspGl 1707633 : GGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGG : 1707689 291 : aTyrGlnGlyLeuVal >>>> Target Intron 2 >>>> ValAlaAlaPr : 299 !||| ! :!!:!! 457 bp ! !! !.!!|| yTyrLeu---ValMet++ ++GluAspThrPr 1707690 : ATATTTG---GTGATGgt.........................agGAAGATACTCC : 1708170 300 : oPheAlaArgArgSerIlePheValPheLeuLeuValGlySerMetAlaLeuLeuP : 318 |.!! !!:!||| !! !|||:!!|||! !|||..!|||!!!:!!..!! !|||! oIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuL 1708171 : CATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGT : 1708227 319 : heMetPheThrTyrSerCysAspGlyValIleGluHisSerGluLysValAlaIle : 336 !.||||||||||||||||||||| !!:!!|||..!.!.||| !!!.||||||! ! euMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsn 1708228 : TGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAAT : 1708281 337 : GlyAlaTyrSerAlaLeuTrpThrIleMetProMetAsnLysProGlyArgMetLe : 355 !.! !|||..!..!! !|||! ! !:!!||||||:!!!:! !!||||||||||| AlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLe 1708282 : GCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCT : 1708338 356 : uArgAsnAspLeuIleMetValIleGluArgSerArgArgValCysCysLeuThrA : 374 ||||!!.||||||! !.!.||||||! !||||||||| ! !||||||||||||| uArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrA 1708339 : GCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTG : 1708395 375 : laAsnAsnPhePheProValSerLeuGluThrTyrThrThr >>>> Target I : 388 || !...||||||||||||||||||||||||||||||:!! 759 laCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708396 : CTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt............. : 1708439 389 : ntron 3 >>>> IleLeuSerThrAlaValSerTyrPheThrLeuLeuArg : 400 bp |||||||||||||||!.!||||||||||||||||||||| ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArg 1708440 : ............agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTACGA : 1709234 vulgar: gi|350425429|ref|XP_003494119.1| 150 400 . KQ414915.1 1707001 1709234 + 526 M 34 102 5 0 2 I 0 272 3 0 2 M 45 135 G 2 0 M 61 183 G 1 0 M 2 6 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707002 1709234 526 + . gene_id 3 ; sequence gi|350425429|ref|XP_003494119.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1707002 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707002 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 3 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709234 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709234 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1707002 1709234 526 + . alignment_id 3 ; Query gi|350425429|ref|XP_003494119.1| ; Align 1707002 151 102 ; Align 1707380 185 135 ; Align 1707515 232 183 ; Align 1707698 294 6 ; Align 1708161 296 276 ; Align 1709196 388 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425429|ref|XP_003494119.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 321 Query range: 147 -> 295 Target range: 1699025 -> 1699971 148 : LeuIleThrAsnAlaGlyLysAsnLysSerGluArgIleLeuProPheAsnValTr : 166 :!!:!!...||| |||:::|||!..|||!!:|||:!:||||||||||||:!!|| IleLeuAlaAsnIleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTr 1699026 : ATTTTAgcaaatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTG : 1699080 167 : pLeuAsnLeuProValSerIleSerProTyrTyr{Gl} >>>> Target Intr : 178 |:!!:!!||||||:!!|||:!:|||||| |||{||} 499 bp pValAspLeuProLeuSerValSerProThrTyr{Gl}-- 1699081 : GGTTGATTTGCCGCTGTCTGTGTCACCAACGTAC{GA}aa................ : 1699120 179 : on 1 >>>> {u}IleGlyPheLeuIleGlnThrIleSerLeuTyrTyrIleAla : 192 {|} ! ! ! !!! !|||..!:!:|||||||||:!!:!!!.! ++{u}AspPheValPheAlaGlnValLeuSerLeuTyrHisValGly 1699121 : .........ag{A}GATTTTGTGTTTGCACAGGTTCTGTCTTTGTACCACGTTGGT : 1699657 193 : ValSerTyrPheCysPheAspAsnValPheCysIleLeuAlaValHisLeuThrGl : 211 |||!!!|||.!!||||||||||||:!!!!.|||:!::!! !:!!||| !.!! ValCysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaTh 1699658 : GTATGTTACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTAC : 1699714 212 : yGlnPheArgIleLeuArgTyrArgPheAlaLysLeuCysAspMetGluHis<->G : 229 !|||||||||||||||!:!||||||!!.:!!!!.||| !!|||! !.!.... | rGlnPheArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysG 1699715 : TCAATTTCGTATACTGCAATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGC : 1699771 230 : lnIleThrGluGluAspThrGlyLeuMetIleThrLysHisValHisThrPheTyr : 247 ||:!! !!!:.!.!!::!!.!! ! :!::!!::: !!.!.!.!.!! !||| lnValAspAspAsnGluSerSerAlaAlaLeuSerArgPheAlaGluAsnCysTyr 1699772 : AAGTAGATGACAATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTAT : 1699825 248 : GluGlnLeuLysLeuTyrIleArgGlnHisGlnThrLeuIleAspPheCysAsnAr : 266 :!! !!!!||| !! !:!!||||||||||||!.!! !||| !:!|||:!!|| LysAlaPheLysAsnCysValArgGlnHisGlnAsnHisIleThrTyrCysHisAr 1699826 : AAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCATATCACGTACTGTCACAG : 1699882 267 : gLeuGluAspValTyrThrMetLeuIlePheGlyGlnValLeuValPheSerValL : 285 ||||.!.!!::!!!:!|||:!::!!:!!.!!|||!!.:!!||||||||||||:!!| gLeuAsnGluIlePheThrValIleValLeuGlyHisIleLeuValPheSerLeuL 1699883 : ATTGAACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGCCTTC : 1699939 286 : euIleCysLeuPheAlaTyrGlnGlyLeuVal : 295 ||||||||||| !!!.!!:!|||! !|||||| euIleCysLeuValGlyPheGlnValLeuVal 1699940 : TGATATGTCTGGTTGGATTCCAAGTGCTCGTA : 1699971 vulgar: gi|350425429|ref|XP_003494119.1| 147 295 . KQ414915.1 1699025 1699971 + 321 M 30 90 S 0 2 5 0 2 I 0 495 3 0 2 S 1 1 M 50 150 G 0 3 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699026 1699971 321 + . gene_id 4 ; sequence gi|350425429|ref|XP_003494119.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1699026 1699117 . + . KQ414915.1 exonerate:protein2genome:local exon 1699026 1699117 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699118 1699119 . + . intron_id 1 ; splice_site "AA" KQ414915.1 exonerate:protein2genome:local intron 1699118 1699616 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699615 1699616 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699617 1699971 . + . KQ414915.1 exonerate:protein2genome:local exon 1699617 1699971 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699026 1699971 321 + . alignment_id 4 ; Query gi|350425429|ref|XP_003494119.1| ; Align 1699026 148 90 ; Align 1699618 179 150 ; Align 1699771 229 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425429|ref|XP_003494119.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 262 Query range: 297 -> 400 Target range: 1689474 -> 1690076 298 : AlaProPheAlaArgArgSerIlePheValPheLeuLeuValGlySerMetAlaLe : 316 !.!||| !.!!! !||| !||||||:!!|||! !:!!:!!||||||.!. !! ValProThrThrThrArgLeuIlePheLeuPheHisMetIleGlySerPheIleHi 1689475 : GTACCTACCACGACGCGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCa : 1689529 317 : uLeuPheMetPheThrTyrSerCysAspGlyValIleGluHisSerGluLysValA : 335 :::......|||||||||||||||! !|||:!!||||||.!.||| ! ! :!!| sIleIlePhePheThrTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleA 1689530 : cataattttcttcacgtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTG : 1689586 336 : laIleGlyAlaTyrSerAlaLeuTrpThrIleMetProMetAsnLysProGlyArg : 353 ||! !!.!.!!|||:!!!.!:!!||||||:!!:!!|||||||||||| !|||!:! laThrAlaThrTyrAlaGlyMetTrpThrValLeuProMetAsnLysValGlyLys 1689587 : CAACAGCAACGTATGCAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAA : 1689640 354 : MetLeuArgAsnAspLeuIleMetValIleGluArgSerArgArgValCysCysLe : 372 |||:!!|||...:!!:!!! :!::!!! !! !|||||| !!:! !||||||:! MetIleArgGlyAsnMetLysLeuMetThrValArgSerLeuGlnProCysCysIl 1689641 : ATGATACGAGGAAATATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCAT : 1689697 373 : uThrAlaAsnAsnPhePheProValSerLeuGluThrTyrThrThr >>>> Tar : 388 !||||||..!...||||||||||||||||||:!!||| !|||.!! eThrAlaGlyGlyPhePheProValSerLeuLysThrAlaThrAla++ 1689698 : AACTGCTGGTGGATTCTTTCCTGTCTCCTTGAAAACTGCTACCGCGgt........ : 1689747 389 : get Intron 1 >>>> IleLeuSerThrAlaValSerTyrPheThrLeuLeuA : 400 293 bp :!!:!!|||:!!.!!:!!|||||||||||||||:!!| ++LeuMetSerSerThrMetSerTyrPheThrLeuMetA 1689748 : .................agCTAATGAGTTCCACAATGTCGTATTTCACGCTCATGA : 1690074 401 : rg : 400 || rg 1690075 : GA : 1690076 vulgar: gi|350425429|ref|XP_003494119.1| 297 400 . KQ414915.1 1689474 1690076 + 262 M 90 270 5 0 2 I 0 289 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1689475 1690076 262 + . gene_id 5 ; sequence gi|350425429|ref|XP_003494119.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1689475 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689475 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690076 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690076 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1689475 1690076 262 + . alignment_id 5 ; Query gi|350425429|ref|XP_003494119.1| ; Align 1689475 298 270 ; Align 1690038 388 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425429|ref|XP_003494119.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 261 Query range: 300 -> 394 Target range: 1702974 -> 1703256 301 : AlaArgArgSerIlePheValPheLeuLeuValGlySerMetAlaLeuLeuPheMe : 319 ||||||||| !! !|||||||||! !:!!|||||||||:!:..!! !|||!!.:! AlaArgArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLeuLe 1702975 : GCGAGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATTGCT : 1703029 320 : tPheThrTyrSerCysAspGlyValIleGluHisSerGluLysValAlaIleGlyA : 338 :|||||||||||||||||||||:!!||||||.!.||| !!!.:!!!.!! !!.! uPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaI 1703030 : ATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGA : 1703086 339 : laTyrSerAlaLeuTrpThrIleMetProMetAsnLysProGlyArgMetLeuArg : 356 !||| !!.!! !|||! ! !:!!||||||:!!||| !!||||||! !|||||| leTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArg 1703087 : TATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGA : 1703140 357 : AsnAspLeuIleMetValIleGluArgSerArgArgValCysCysLeuThrAlaAs : 375 !..||||||! !|||||||||! !|||||||||!:! ! !!||||||||||||!: ArgAspLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSe 1703141 : AGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAG : 1703197 376 : nAsnPhePheProValSerLeuGluThrTyrThrThrIleLeuSerThrAlaValS : 394 !...||||||||||||||||||||||||! !||||||:!!!!!!:! !:!! !!| rGlyPhePheProValSerLeuGluThrCysThrThrValPheAsnPheSerPheS 1703198 : CGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATTTCTCATTCT : 1703254 395 : er : 394 || er 1703255 : CT : 1703256 vulgar: gi|350425429|ref|XP_003494119.1| 300 394 . KQ414915.1 1702974 1703256 + 261 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702975 1703256 261 + . gene_id 6 ; sequence gi|350425429|ref|XP_003494119.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702975 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1702975 1703256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702975 1703256 261 + . alignment_id 6 ; Query gi|350425429|ref|XP_003494119.1| ; Align 1702975 301 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425429|ref|XP_003494119.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 259 Query range: 183 -> 296 Target range: 1702013 -> 1702355 184 : GlnThrIleSerLeuTyrTyrIleAlaValSerTyrPheCysPheAspAsnValPh : 202 |||..!:!:|||||||||:!!:!!!.!|||!!!|||.!!||||||||||||:!!!! GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 203 : eCysIleLeuAlaValHisLeuThrGlyGlnPheArgIleLeuArgTyrArgPheA : 221 .|||:!::!! !:!!||| !.!! !|||||||||||||||!:!||||||!!.: uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 222 : laLysLeuCysAspMetGluHis<->GlnIleThrGluGluAspThrGlyLeuMet : 238 !!!!.||| !!|||! !.!.... |||:!! !!!:.!.!!::!!.!! ! erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1702179 239 : IleThrLysHisValHisThrPheTyrGluGlnLeuLysLeuTyrIleArgGlnHi : 257 :!::!!::: !!.!.!.!.!! !|||:!! !!!!||| !! !:!!|||||||| LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHi 1702180 : CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACA : 1702236 258 : sGlnThrLeuIleAspPheCysAsnArgLeuGluAspValTyrThrMetLeuIleP : 276 ||||!.!! !||| !:!|||:!!||||||.!.!!::!!!:!|||:!::!!:!!. sGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValL 1702237 : TCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTAC : 1702293 277 : heGlyGlnValLeuValPheSerValLeuIleCysLeuPheAlaTyrGlnGlyLeu : 294 !!|||!!.:!!||||||||||||:!!|||||||||||| !!!.!!:!|||! !||| euGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeu 1702294 : TCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTC : 1702347 295 : ValVal : 296 |||||| ValVal 1702348 : GTGGTA : 1702355 vulgar: gi|350425429|ref|XP_003494119.1| 183 296 . KQ414915.1 1702013 1702355 + 259 M 45 135 G 0 3 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1702355 259 + . gene_id 7 ; sequence gi|350425429|ref|XP_003494119.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702014 1702355 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702355 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1702355 259 + . alignment_id 7 ; Query gi|350425429|ref|XP_003494119.1| ; Align 1702014 184 135 ; Align 1702152 229 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425429|ref|XP_003494119.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 150 -> 217 Target range: 1681725 -> 1682049 151 : AsnAlaGlyLysAsnLysSerGluArgIleLeuProPheAsnValTrpLeu<->As : 168 ||| !||||||!:! ! ..!|||||||||||||||||| !! ! :!! || AsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAs 1681726 : AACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAA : 1681780 169 : nLeuProValSerIleSerProTyrTyrGluIleGlyPheLeuIleGln >>>> : 185 |||||||..!|||:!:!!!||||||||||||||| |||:!!|||:!! nLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681781 : CTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt..... : 1681833 186 : Target Intron 1 >>>> ThrIleSerLeuTyrTyrIleAlaValSerTyrP : 196 120 bp |||:!!|||:!! :!! !.!:!!!!!!:!! ++ThrLeuSerValValHisSerGlyIleCysPheC 1681834 : ....................agACATTATCTGTGGTGCATTCGGGAATTTGTTTCT : 1681984 197 : heCysPheAspAsnValPheCysIleLeuAlaValHisLeuThrGlyGlnPheArg : 214 !|||||||||||| !!.!.|||||||||::!:!!|||:!! !|||||||||!:! ysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLys 1681985 : GTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAG : 1682038 215 : IleLeuArg : 217 ||||||!:! IleLeuGln 1682039 : ATTTTACAA : 1682049 vulgar: gi|350425429|ref|XP_003494119.1| 150 217 . KQ414915.1 1681725 1682049 + 177 M 17 51 G 0 3 M 17 51 5 0 2 I 0 116 3 0 2 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681726 1682049 177 + . gene_id 8 ; sequence gi|350425429|ref|XP_003494119.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681726 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681726 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682049 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682049 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681726 1682049 177 + . alignment_id 8 ; Query gi|350425429|ref|XP_003494119.1| ; Align 1681726 151 51 ; Align 1681780 168 51 ; Align 1681951 185 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425429|ref|XP_003494119.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 301 -> 400 Target range: 1682556 -> 1683051 302 : ArgArgSerIlePheValPheLeuLeuValGlySerMetAlaLeuLeuPheMetPh : 320 !:!|||! !:!:|||:!! !! !!!!:!!|||.!!:!! :::|||:::.. LysArgLeuLeuPheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePheLeuIl 1682557 : AAACGATTGTTGTTCCTAAATTACTTTCTCGGTGGAGTGATacagatatttttaat : 1682611 321 : eThrTyrSerCysAspGlyValIleGluHisSerGluLysValAlaIleGlyAlaT : 339 .||| !:!|||:!!! !:!!!!:|||!!.|||! :!!!.!! !!.! !| eThrLeuAsnCysAsnAspIleMetGluGlnSerGlyAlaIleGlyThrAlaIleT 1682612 : aacccTAAATTGCAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAGCGATCT : 1682668 340 : yrSerAlaLeuTrpThrIleMetProMetAsnLysProGlyArgMetLeuArgAsn : 357 |||||..! !||| !! ! ||| ..!!!!|||!!. yrSerCysAsnTrpGluArgAsnValTyrAsnHis---PheTyrGlnPheArgLys 1682669 : ACAGTTGTAATTGGGAGAGGAAtgtttataatcat---ttttaccAGTTCAGAAAG : 1682719 358 : AspLeuIleMetValIleGluArgSerArgArgValCysCysLeuThrAlaAsnAs : 376 |||:!!!!:!!:|||!!:! !|||:!!!:!||| !|||! !:!!:!!||| !! AspMetMetIleValMetValArgAlaLysArgProCysTyrIleSerAlaAlaLy 1682720 : GATATGATGATTGTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGCAGCGAA : 1682776 377 : nPhePheProValSerLeuGluThrTyrThrThr >>>> Target Intron 1 : 388 .|||||||||:!!|||||||||:!!!:!|||! 201 bp sPhePheProIleSerLeuGluSerPheThrLys++ 1682777 : ATTCTTTCCAATCTCCCTTGAATCGTTCACGAaggt.................... : 1682814 389 : >>>> IleLeuSerThrAlaValSerTyrPheThrLeuLeuArg : 400 :!:||||||.!!.!!!.!||||||!:!|||||||||||| ++ValLeuSerAlaThrAlaSerTyrTyrThrLeuLeuArg 1682815 : .....agGTGTTAAGTGCAACAGCATCTTATTATACACTGCTGCGT : 1683051 vulgar: gi|350425429|ref|XP_003494119.1| 301 400 . KQ414915.1 1682556 1683051 + 158 M 49 147 G 1 0 M 36 108 5 0 2 I 0 197 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682557 1683051 158 + . gene_id 9 ; sequence gi|350425429|ref|XP_003494119.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1682557 1682811 . + . KQ414915.1 exonerate:protein2genome:local exon 1682557 1682811 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1682812 1682813 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1682812 1683012 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1683011 1683012 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1683013 1683051 . + . KQ414915.1 exonerate:protein2genome:local exon 1683013 1683051 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1682557 1683051 158 + . alignment_id 9 ; Query gi|350425429|ref|XP_003494119.1| ; Align 1682557 302 147 ; Align 1682704 352 108 ; Align 1683013 388 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425429|ref|XP_003494119.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 149 -> 184 Target range: 1688053 -> 1688158 150 : ThrAsnAlaGlyLysAsnLysSerGluArgIleLeuProPheAsnValTrpLeuAs : 168 .!!||| !.!!::!|||||||||!!:|||:!!|||||||||!!.:!!|||:!!:! AlaAsnMetSerArgAsnLysSerAspArgValLeuProPheLysMetTrpValAs 1688054 : GCAAATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTGGGTCGA : 1688108 169 : nLeuProValSerIleSerProTyrTyrGluIleGlyPheLeuIleGln : 184 !! !|||:!!||| !!!!||||||||||||:!: !||| !.!!||| pTrpProLeuSerAspThrProTyrTyrGluLeuMetPheThrPheGln 1688109 : TTGGCCGCTATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAG : 1688158 vulgar: gi|350425429|ref|XP_003494119.1| 149 184 . KQ414915.1 1688053 1688158 + 106 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688054 1688158 106 + . gene_id 10 ; sequence gi|350425429|ref|XP_003494119.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1688054 1688158 . + . KQ414915.1 exonerate:protein2genome:local exon 1688054 1688158 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688054 1688158 106 + . alignment_id 10 ; Query gi|350425429|ref|XP_003494119.1| ; Align 1688054 150 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927561|ref|XP_012248310.1| PREDICTED: odorant receptor 4-like isoform X2 [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 777 Query range: 60 -> 404 Target range: 1710848 -> 1713330 61 : IlePheTyrLysGlyAspIleLeuTyrValThrThrAsnIleLeuThrValThrMe : 79 |||.!! !..! !|||! !|||!:!! !! ! !!.!:!!|||:!!|||! !|| IleLeuIleSerGlnAspThrLeuPheAspIleCysThrLeuLeuSerValIleMe 1710849 : ATTCTCATTTCACAGGACACACTGTTCGACATATGCACTCTTCTGTCGGTGATAAT : 1710903 80 : tGlyLeuIleLysIleCysIleIleMetAlaHisLysGluGluPheIleAsnLeuI : 98 | ! !||||||||| !|||:!:.!. !:!!||||||||||||.!!..!|||| tProAlaIleLysIleIleIleLeuPheIleAsnLysGluGluPhePheArgLeuI 1710904 : GCCCGCTATCAAAATAATCATCCTGTTTATCAACAAGGAGGAGTTTTTCCGTTTGA : 1710960 99 : leValTyrValArgGlnHisPheTrpAsnValLysTyrAsnPheArgGluLysGlu : 116 ||||||||..!..!!:!!!.||| !|||! ! ! |||||| !|||!:!:!! leValTyrThrGluArgGlnPheMetAsnGlyAspTyrAsnGluAspGluArgLys 1710961 : TCGTGTACACAGAGCGACAATTCATGAACGGGGATTACAACGAGGACGAGAGGAAG : 1711014 117 : IleLeuAspAspCysArgLysThrCysThrPhePheValCysSerValThrIleMe : 135 |||:!! !||||||!:!::: !||||||||||||..!|||! !:!!:!! !:! IleValPheAspCysLysArgLeuCysThrPhePheThrCysPheLeuSerSerVa 1711015 : ATTGTGTTCGATTGTAAACGCCTGTGTACATTCTTCACTTGTTTCCTCTCATCTGT : 1711071 136 : tGlyAlaCysAlaIleIleAlaTyrLeuIleThrProValIle{A} >>>> Tar : 150 ! ! !! ..!:!!:!!:!!|||:!!:!!||||||:!! !{ } lThrLeuSerCysValLeuSerTyrValValThrProIleTyr{M}++ 1711072 : GACTTTATCGTGCGTTCTCTCTTACGTCGTCACTCCAATTTAC{A}gt........ : 1711119 151 : get Intron 1 >>>> {la}AsnAlaGlyLysAsnAsnSerGluArgValLeu : 161 119 bp { !}||| !|||!:!|||.!.|||!!:|||:!!||| ++{et}AsnIleGlyArgAsnGluSerAspArgIleLeu 1711120 : .................ag{TG}AATATTGGAAGAAACGAATCCGACAGAATACTG : 1711268 162 : ProPheAsnIleTrpLeuAsnLeuProValSerMetSerProTyrTyrGluMetIl : 180 ||||||!!.!!:|||:!!:!!:!!|||..!||||||!!!||||||:::|||:::.. ProPheLysMetTrpIleAspIleProThrSerMetThrProTyrPheGluIlePh 1711269 : CCGTTTAAAATGTGGATTGATATACCGACATCGATGACACcgtattttgaaatatt : 1711325 181 : ePheThrLeuGln >>>> Target Intron 2 >>>> MetIleAsnMetTy : 189 .|||||||||||| 546 bp :!::!!::! !|| ePheThrLeuGln++ ++ValLeuSerAlaTy 1711326 : cttcaccTTACAGgt.........................agGTTTTATCCGCGTA : 1711898 190 : rGlnIleAlaValThrTyrPheCysPheAspAsnIlePheCysIleLeuAlaIleH : 208 |||||||!.!|||!:!||| !||||||||||||:!!.!.||||||:!! !:!!| rGlnIleGlyValSerTyrGlyCysPheAspAsnValLeuCysIleMetAsnLeuH 1711899 : TCAAATTGGCGTGAGTTACGGTTGCTTCGACAACGTTCTATGCATCATGAACCTAC : 1711955 209 : isLeuAlaGlyGlnPheArgIleLeuArgTyrArgPheSerLysLeuCysAspIle : 226 |||||||| !|||||||||||||||!:!:!!|||.!. !!!.:!! !! !:!: isLeuAlaThrGlnPheArgIleLeuGlnHisArgLeuValAsnIleAsnGlyLeu 1711956 : ACTTGGCCACTCAGTTTCGAATACTGCAACATAGACTGGTGAATATAAACGGTCTG : 1712009 227 : GluHisGlnIleAsnGluLysAspMetGluLeuThrIle<-><-><->ThrAsnTy : 242 :!! !:!! !.. !:!! ! ||| !:!!||| |||.!.!: LysSerLysGlnThrProGluLysGlyGluThrSerIleIleAspSerThrGluPh 1712010 : AAGAGCAAACAGACACCGGAGAAAGGTGAAACGTCGATTATAGATTCGACAGAATT : 1712066 243 : rAlaHisThrPheTyrLysLysLeuLysMetTyrValArgHisHisGlnGluLeuI : 261 !||| !!!.!! !||| ! !!!|||! ! !||||||!!.||||||...|||! eAlaAspAsnSerTyrAspValPheLysArgCysValArgGlnHisGlnSerLeuM 1712067 : TGCGGATAACTCTTACGACGTTTTCAAAAGATGCGTTCGTCAACATCAATCTCTGA : 1712123 262 : leAsnPheCysAspArgLeuGluAsnValTyrThrMetLeuIleLeuGlyGlnVal : 279 !: !||||||::::::||||||...:::!:!!:!|||:!!||||||||||||:!! etAlaPheCysGluLysLeuGluGluMetPheSerMetIleIleLeuGlyGlnLeu 1712124 : TGGCTTTCTgcgagaaactcgaagaaatgTTCAGTATGATTATACTGGGGCAATTG : 1712177 280 : LeuValPheSerValLeuIleCysLeuPheAlaTyrGlnGlyLeuLeu >>>> T : 296 ||||||||||||:!!!!!!!:|||||| !!.!! !|||! !|||||| LeuValPheSerIlePheMetCysLeuAspValCysGlnValLeuLeu++ 1712178 : TTAGTGTTCAGTATTTTTATGTGTCTCGACGTGTGCCAAGTACTTCTGgt...... : 1712230 297 : arget Intron 3 >>>> AlaAlaAlaProLeuAlaArgArgSerIlePheIl : 307 142 bp !!!.!||| !!:!!!.!!:!!:!! |||||| ++ProGlyAlaSerValGlyLysGlnMetIlePheTh 1712231 : ...................agCCAGGTGCATCTGTGGGTAAACAGAtgattttcac : 1712403 308 : ePheHisLeuIleGlySerMetAlaLeuLeuPheMetPheThrTyrSerCysAspG : 326 ||||||||| |||!!!|||..!! !|||.!.||||||||||||||||||||| rPheHisLeuAlaGlyCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspC 1712404 : gtttcacctAGCGGGATGTATGTGTCAATTGCTGATGTTTACGTACAGCTGCGATT : 1712460 327 : lyValIleGluHisSerGluLysValAlaIleGlyAlaTyrSerAlaLeuTrpThr : 344 !!:!!||| !.!.||| !!!.|||.!! !!.!!.!|||..!!.!! !||| !! ysIleIleThrGluSerLeuAsnValThrGluAlaValTyrAspGlyProTrpPro 1712461 : GTATAATAACGGAAAGTTTGAACGTGACGGAAGCGGTGTACGATGGACCATGGCCA : 1712514 345 : IleMetProMetAsnLysProGlyLysMetLeuArgAsnAspLeuIleMetValIl : 363 !:!!||||||!:!! ! !|||!:!|||:!!|||!!.|||||||||:!:||||| ArgLeuProMetSerThrArgGlyArgMetIleArgLysAspLeuIleLeuValIl 1712515 : CGTTTGCCAATGAGCACGAGAGGAAGAATGATAAGGAAGGATTTGATACTCGTTAT : 1712571 364 : eGluArgSerArgArgValCysCysLeuThrAlaAsnArgPhePheProValSerL : 382 | !||||||||| ! !|||||||||||||||!.. !!|||||| !:!!|||| eIleArgSerArgValProCysCysLeuThrAlaArgGlyPhePheValIleSerL 1712572 : CATAAGATCGAGAGTACCTTGTTGCTTGACCGCCAGAGGATTCTTCGTAATATCTT : 1712628 383 : euGluThrTyrAsnLys >>>> Target Intron 4 >>>> IleLeuSerT : 391 |||||||||||!..||| 634 bp :!!:!!|||| euGluThrTyrThrLys++ ++ValIleSerT 1712629 : TGGAAACGTATACGAAGgt.........................agGTTATAAGTA : 1713289 392 : hrAlaAlaSerTyrPheThrLeuLeuArgAsnHisLeuGlu : 404 |||||!.!|||||||||||||||||||||.!.!.!:!!||| hrAlaValSerTyrPheThrLeuLeuArgGlnArgIleGlu 1713290 : CAGCAGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAG : 1713330 vulgar: gi|815927561|ref|XP_012248310.1| 60 404 . KQ414915.1 1710848 1713330 + 777 M 89 267 S 0 1 5 0 2 I 0 115 3 0 2 S 1 2 M 34 102 5 0 2 I 0 542 3 0 2 M 55 165 G 0 9 M 56 168 5 0 2 I 0 138 3 0 2 M 92 276 5 0 2 I 0 630 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1710849 1713330 777 + . gene_id 1 ; sequence gi|815927561|ref|XP_012248310.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1710849 1711116 . + . KQ414915.1 exonerate:protein2genome:local exon 1710849 1711116 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711117 1711118 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711117 1711235 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711234 1711235 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711236 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711236 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712227 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712228 1712229 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712228 1712369 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1712368 1712369 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1712370 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712370 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713330 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713330 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1710849 1713330 777 + . alignment_id 1 ; Query gi|815927561|ref|XP_012248310.1| ; Align 1710849 61 267 ; Align 1711238 151 102 ; Align 1711886 185 165 ; Align 1712060 240 168 ; Align 1712370 296 276 ; Align 1713280 388 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927561|ref|XP_012248310.1| PREDICTED: odorant receptor 4-like isoform X2 [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 639 Query range: 148 -> 400 Target range: 1694349 -> 1696251 149 : IleAlaAsnAlaGlyLysAsnAsnSerGluArgValLeuProPheAsnIleTrpLe : 167 :!!||||||!.!|||||||||.!.|||||||||:!!||||||||||||!!:|||:! LeuAlaAsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTrpVa 1694350 : TTAGCAAATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTGGGT : 1694404 168 : uAsnLeuProValSerMetSerProTyrTyrGluMetIlePheThrLeuGln >> : 185 !:!!!!!|||..!.!!:!!|||||||||||||||:!::!!|||! !:!!||| lAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGln++ 1694405 : TGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGgt.. : 1694460 186 : >> Target Intron 1 >>>> MetIleAsnMetTyrGlnIleAlaValThrT : 195 409 bp ! :!! !:!!|||!!.:!!!.!:!! !| ++ThrLeuCysValTyrHisValGlyIleCysT 1694461 : .......................agACACTTTGCGTGTACCATGTCGGTATATGTT : 1694897 196 : yrPheCysPheAspAsnIlePheCysIleLeuAlaIleHisLeuAlaGlyGlnPhe : 213 ||.!.|||||||||||||||.!! !!:!!||| !:!!|||:!!||| !|||||| yrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGlnPhe 1694898 : ACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAATTT : 1694951 214 : ArgIleLeuArgTyrArgPheSerLysLeuCysAsp<->IleGluHisGlnIleAs : 231 |||||||||!:!|||||||||! !!!.||| !!:!! |||||| ! |||! !:! ArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLysGlnThrAs 1694952 : CGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAACAGA : 1695008 232 : nGluLysAspMetGluLeuThrIleThrAsnTyrAlaHisThrPheTyrLysLysL : 250 !! :::::::::|||::: !||||||!:!.!! ! ! !||| !:!!| pGlyArgGluLeuGluIleGlyTyrThrAsnPheThrValAspSerTyrLeuGlnL 1695009 : CGGTcgagaattggaaattggtTACACAAATTTCACAGTCGATAGTTACTTACAAT : 1695065 251 : euLysMetTyrValArgHisHisGlnGluLeuIleAsnPheCysAspArgLeuGlu : 268 |||||! ! !|||!:!:!!||||||! !|||! !..!!:!||| ! !:!|||||| euLysSerCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeuGlu 1695066 : TGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTGGAG : 1695119 269 : AsnValTyrThrMetLeuIleLeuGlyGlnValLeuValPheSerValLeuIleCy : 287 |||:!!!:!:!!:!!|||:!:||||||||||||||| !!.!.:!!:!!:!!:!!|| AsnIlePheSerLeuLeuValLeuGlyGlnValLeuPheLeuAlaMetValLeuCy 1695120 : AACATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTACTTTG : 1695176 288 : sLeuPheAlaTyrGlnGlyLeuLeu >>>> Target Intron 2 >>>> Al : 296 |||| ! !.!|||||| !!!!||| 415 bp .! sLeuValGlyTyrGlnLeuPheLeu++ ++Th 1695177 : CCTCGTGGGATATCAGCTATTTCTGgt.........................agAC : 1695618 297 : aAlaAlaProLeuAlaArgArgSerIlePheIlePheHisLeuIleGlySerMetA : 315 !! !:!!|||! !:!!|||!.! ! !!!.:!!.!!:!!||| !|||!!!:!!. rAspSerProProSerArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrLeuC 1695619 : AGACTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTTTGT : 1695675 316 : laLeuLeuPheMetPheThrTyrSerCysAspGlyValIleGluHisSerGluLys : 333 .!! !||||||||||||||||||||||||||||||:!!! !..!.!.||| ! ! ysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGluSerMetAsp 1695676 : GTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATGGAC : 1695729 334 : ValAlaIleGlyAlaTyrSerAlaLeuTrpThrIleMetProMetAsnLysProGl : 352 |||::!! !!.!!.!!:!:!! !! !|||.!!! !:!!||||||:!!!:! !|| ValSerArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAspArgAsnGl 1695730 : GTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAATGG : 1695786 353 : yLysMetLeuArgAsnAspLeuIleMetValIleGluArgSerArgArgValCysC : 371 ||||! :!!|||.!...!:!!:!!||||||||| !||||||!.!||| !|||| yLysSerValArgGlnSerMetLeuMetValIleMetArgSerAsnArgCysCysC 1695787 : GAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTTGCT : 1695843 372 : ysLeuThrAlaAsnArgPhePheProValSerLeuGluThrTyrAsnLys >>>> : 388 |||||||||||!:! !!|||||||||||||||||||||||||||!.! ! ysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrGly++ 1695844 : GCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGgt.... : 1695896 389 : Target Intron 3 >>>> IleLeuSerThrAlaAlaSerTyrPheThrLeu : 398 319 bp :!!|||||||||||| !||||||||||||||| ++ValLeuSerThrAlaMetSerTyrPheThrLeu 1695897 : .....................agGTCCTCAGCACTGCAATGTCATACTTTACACTA : 1696243 399 : LeuArg : 400 |||||| LeuArg 1696244 : CTGAGA : 1696251 vulgar: gi|815927561|ref|XP_012248310.1| 148 400 . KQ414915.1 1694349 1696251 + 639 M 36 108 5 0 2 I 0 405 3 0 2 M 41 123 G 0 3 M 70 210 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694350 1696251 639 + . gene_id 2 ; sequence gi|815927561|ref|XP_012248310.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694350 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694350 1694457 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 2 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696251 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696251 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694350 1696251 639 + . alignment_id 2 ; Query gi|815927561|ref|XP_012248310.1| ; Align 1694350 149 108 ; Align 1694867 185 123 ; Align 1694993 226 210 ; Align 1695618 296 276 ; Align 1696213 388 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927561|ref|XP_012248310.1| PREDICTED: odorant receptor 4-like isoform X2 [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 546 Query range: 150 -> 400 Target range: 1707001 -> 1709234 151 : AsnAlaGlyLysAsnAsnSerGluArgValLeuProPheAsnIleTrpLeuAsnLe : 169 !:: |||||||||...|||:!:|||:!!||| ! !!|||.!!|||:!!:!!!! SerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAspPh 1707002 : AgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGACTT : 1707056 170 : uProValSerMetSerProTyrTyrGluMetIlePheThrLeuGln >>>> Tar : 185 !|||..!!!!|||!!!||||||||||||!!::!!||||||! !||| eProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707057 : TCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt........ : 1707106 186 : get Intron 1 >>>> MetIleAsnMetTyrGlnIleAlaValThrTyrPheC : 197 276 bp :!:.!!! !:!: ! :!!..!:!!!:!|||.!!| ++ValPheIleValMetTyrValCysIleSerTyrLeuC 1707107 : .................agGTTTTTATCGTAATGTACGTTTGCATAAGCTACCTTT : 1707416 198 : ysPheAspAsnIlePheCysIleLeuAlaIleHisLeuAlaGlyGlnPheArgIle : 215 ||.!!||||||.!!.!.|||!!::!! !:!!||| !||| !|||||||||||| ysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIle 1707417 : GTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATA : 1707470 216 : LeuArgTyrArgPheSerLysLeuCysAspIleGluHisGlnIleAsnGluLysAs : 234 |||!:!||||||.!.|||!!.:!!|||! ! !.!..!.!:: !:::::||| LeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArg---SerAspLysIl 1707471 : TTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGT---Agcgataaaat : 1707524 235 : pMetGluLeuThrIleThrAsnTyrAlaHisThrPheTyrLysLysLeuLysMetT : 253 ::: ||| :!!||| :!! !! !! !||| |||!!!|||! ! eSerLysLysThrProSerAsn---SerAspGluCysTyrAlaLysPheLysAsnC 1707525 : ttcgaaaaaaacaCCGTCCAAT---TCGGACGAATGCTACGCTAAGTTCAAAAATT : 1707578 254 : yrValArgHisHisGlnGluLeuIleAsnPheCysAspArgLeuGluAsnValTyr : 271 !:!!!:!!!.||||||! !||||||.!.!:!|||:!!..!|||:!!.!.|||!:! ysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluValPhe 1707579 : GCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGGTGTTC : 1707632 272 : ThrMetLeuIleLeuGlyGlnValLeuValPheSerValLeuIleCysLeuPheAl : 290 !:!:!!!:!:|||!.!|||||||||:!!||||||:!!|||!!:|||||| !!. GlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAspGl 1707633 : GGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGG : 1707689 291 : aTyrGlnGlyLeuLeu >>>> Target Intron 2 >>>> AlaAlaAlaPr : 299 !||| ! :!!:!! 457 bp ! !! !.!!|| yTyrLeu---ValMet++ ++GluAspThrPr 1707690 : ATATTTG---GTGATGgt.........................agGAAGATACTCC : 1708170 300 : oLeuAlaArgArgSerIlePheIlePheHisLeuIleGlySerMetAlaLeuLeuP : 318 |:!! !!:!||| !! !|||:!:|||||||||! |||!!!:!!..!! !|||! oIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuL 1708171 : CATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGT : 1708227 319 : heMetPheThrTyrSerCysAspGlyValIleGluHisSerGluLysValAlaIle : 336 !.||||||||||||||||||||| !!:!!|||..!.!.||| !!!.||||||! ! euMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsn 1708228 : TGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAAT : 1708281 337 : GlyAlaTyrSerAlaLeuTrpThrIleMetProMetAsnLysProGlyLysMetLe : 355 !.! !|||..!..!! !|||! ! !:!!||||||:!!!:! !!|||::!||||| AlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLe 1708282 : GCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCT : 1708338 356 : uArgAsnAspLeuIleMetValIleGluArgSerArgArgValCysCysLeuThrA : 374 ||||!!.||||||! !.!.||||||! !||||||||| ! !||||||||||||| uArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrA 1708339 : GCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTG : 1708395 375 : laAsnArgPhePheProValSerLeuGluThrTyrAsnLys >>>> Target I : 388 || ! !!|||||||||||||||||||||||||||!.!..! 759 laCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708396 : CTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt............. : 1708439 389 : ntron 3 >>>> IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArg : 400 bp ||||||||||||||||||||||||||||||||||||||| ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArg 1708440 : ............agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTACGA : 1709234 vulgar: gi|815927561|ref|XP_012248310.1| 150 400 . KQ414915.1 1707001 1709234 + 546 M 34 102 5 0 2 I 0 272 3 0 2 M 45 135 G 1 0 M 11 33 G 1 0 M 50 150 G 1 0 M 2 6 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707002 1709234 546 + . gene_id 3 ; sequence gi|815927561|ref|XP_012248310.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1707002 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707002 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 3 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709234 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709234 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1707002 1709234 546 + . alignment_id 3 ; Query gi|815927561|ref|XP_012248310.1| ; Align 1707002 151 102 ; Align 1707380 185 135 ; Align 1707515 231 33 ; Align 1707548 243 150 ; Align 1707698 294 6 ; Align 1708161 296 276 ; Align 1709196 388 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927561|ref|XP_012248310.1| PREDICTED: odorant receptor 4-like isoform X2 [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 406 Query range: 233 -> 400 Target range: 1688466 -> 1690076 234 : AspMetGluLeuThrIleThrAsnTyrAlaHisThrPheTyrLysLysLeuLysMe : 252 ||| !..! !!.!!!:|||.!.|||.!!:!!! !! !|||! ||||||! ! AspGluArgThrAsnMetThrGluTyrThrAsnLysCysTyrThrLysLeuIleAs 1688467 : GACGAGCGAACGAACATGACCGAATACACGAACAAATGTTACACCAAGCTGATAGA : 1688521 253 : tTyrValArgHisHisGlnGluLeuIleAsnPheCysAspArgLeuGluAsnValT : 271 ! !:!!!:!:!!||||||..!||||||.!.||||||! !:!||||||||||||| pCysIleLysAsnHisGlnSerLeuIleGluPheCysValLysLeuGluAsnValT 1688522 : TTGCATCAAAAATCATCAGTCGTTGATCGAGTTCTGCGTGAAACTCGAGAACGTGT : 1688578 272 : yrThrMetLeuIleLeuGlyGlnValLeuValPheSerValLeuIleCysLeuPhe : 289 |||||:!! !|||||||||!!.:!!:!!|||||||||:!!|||!!:|||!!! ! yrThrLeuThrIleLeuGlyHisIleValValPheSerLeuLeuMetCysPheAsp 1688579 : ACACGTTGACTATACTCGGCCACATAGTGGTCTTCAGCTTGTTGATGTGCTTCGAC : 1688632 290 : AlaTyrGlnGlyLeuLeu >>>> Target Intron 1 >>>> AlaAlaAla : 298 .!!|||:!!! !:!!||| 816 bp ||| !!.! ThrTyrGluValValLeu++ ++AlaLysVal 1688633 : ACGTACGAGGTAGTTCTGgt.........................agGCAAAGGTA : 1689475 299 : ProLeuAlaArgArgSerIlePheIlePheHisLeuIleGlySerMetAlaLeuLe : 317 ||| !.!!! !||| !||||||:!!||||||:!!|||||||||.!. !! :: ProThrThrThrArgLeuIlePheLeuPheHisMetIleGlySerPheIleHisIl 1689476 : CCTACCACGACGCGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCacat : 1689532 318 : uPheMetPheThrTyrSerCysAspGlyValIleGluHisSerGluLysValAlaI : 336 :......|||||||||||||||! !|||:!!||||||.!.||| ! ! :!!|||! eIlePhePheThrTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleAlaT 1689533 : aattttcttcacgtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCAA : 1689589 337 : leGlyAlaTyrSerAlaLeuTrpThrIleMetProMetAsnLysProGlyLysMet : 354 !!.!.!!|||:!!!.!:!!||||||:!!:!!|||||||||||| !||||||||| hrAlaThrTyrAlaGlyMetTrpThrValLeuProMetAsnLysValGlyLysMet 1689590 : CAGCAACGTATGCAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAATG : 1689643 355 : LeuArgAsnAspLeuIleMetValIleGluArgSerArgArgValCysCysLeuTh : 373 :!!|||...:!!:!!! :!::!!! !! !|||||| !!:! !||||||:!!|| IleArgGlyAsnMetLysLeuMetThrValArgSerLeuGlnProCysCysIleTh 1689644 : ATACGAGGAAATATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAAC : 1689700 374 : rAlaAsnArgPhePheProValSerLeuGluThrTyrAsnLys >>>> Target : 388 ||||..! !!||||||||||||||||||:!!||| !!.! ! 2 rAlaGlyGlyPhePheProValSerLeuLysThrAlaThrAla++ 1689701 : TGCTGGTGGATTCTTTCCTGTCTCCTTGAAAACTGCTACCGCGgt........... : 1689747 389 : Intron 2 >>>> IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArg : 400 93 bp :!!:!!|||:!!.!! !|||||||||||||||:!!||| ++LeuMetSerSerThrMetSerTyrPheThrLeuMetArg 1689748 : ..............agCTAATGAGTTCCACAATGTCGTATTTCACGCTCATGAGA : 1690076 vulgar: gi|815927561|ref|XP_012248310.1| 233 400 . KQ414915.1 1688466 1690076 + 406 M 62 186 5 0 2 I 0 812 3 0 2 M 92 276 5 0 2 I 0 289 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688467 1690076 406 + . gene_id 4 ; sequence gi|815927561|ref|XP_012248310.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688467 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688467 1688652 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690076 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690076 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688467 1690076 406 + . alignment_id 4 ; Query gi|815927561|ref|XP_012248310.1| ; Align 1688467 234 186 ; Align 1689469 296 276 ; Align 1690038 388 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927561|ref|XP_012248310.1| PREDICTED: odorant receptor 4-like isoform X2 [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 390 Query range: 147 -> 295 Target range: 1699025 -> 1699971 148 : ValIleAlaAsnAlaGlyLysAsnAsnSerGluArgValLeuProPheAsnIleTr : 166 :!!:!!|||||| |||:::|||!:!|||!!:||||||||||||||||||!!:|| IleLeuAlaAsnIleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTr 1699026 : ATTTTAgcaaatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTG : 1699080 167 : pLeuAsnLeuProValSerMetSerProTyrTyrGluMetIlePheThrLeuGln : 185 |:!!:!!||||||:!!|||:!!|||||| ||||||!!::!:|||..!|||||| pValAspLeuProLeuSerValSerProThrTyrGluIleValPheValLeuGln+ 1699081 : GGTTGATTTGCCGCTGTCTGTGTCACCAACGTACGAAATAGTGTTCGTGCTTCAGg : 1699137 186 : >>>> Target Intron 1 >>>> MetIleAsnMetTyrGlnIleAlaValT : 194 499 bp :!::!:::!:!!|||!!.:!!!.!||| + ++ValLeuSerLeuTyrHisValGlyValC 1699138 : t.........................agGTTCTGTCTTTGTACCACGTTGGTGTAT : 1699663 195 : hrTyrPheCysPheAspAsnIlePheCysIleLeuAlaIleHisLeuAlaGlyGln : 212 !|||.!!||||||||||||:!!!!.|||:!::!! !:!:||| !||| !||| ysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGln 1699664 : GTTACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAA : 1699717 213 : PheArgIleLeuArgTyrArgPheSerLysLeuCysAspIleGluHis<->GlnIl : 230 ||||||||||||!:!||||||!!.|||!!.||| !!|||! .!.... |||:! PheArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysGlnVa 1699718 : TTTCGTATACTGCAATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGT : 1699774 231 : eAsnGluLysAspMetGluLeuThrIleThrAsnTyrAlaHisThrPheTyrLysL : 249 !:!!!!:!!.!!: ... !.!!:!::!!..!!:!|||.!.!.!! !|||||| lAspAspAsnGluSerSerAlaAlaLeuSerArgPheAlaGluAsnCysTyrLysA 1699775 : AGATGACAATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGG : 1699831 250 : ysLeuLysMetTyrValArgHisHisGlnGluLeuIleAsnPheCysAspArgLeu : 267 !!!!|||! ! !||||||!!.||||||.!.! !|||!..!:!||| !!|||||| laPheLysAsnCysValArgGlnHisGlnAsnHisIleThrTyrCysHisArgLeu 1699832 : CGTTTAAAAATTGCGTACGACAACATCAGAATCATATCACGTACTGTCACAGATTG : 1699885 268 : GluAsnValTyrThrMetLeuIleLeuGlyGlnValLeuValPheSerValLeuIl : 286 .!..!.:!!!:!|||:!::!!:!!||||||!!.:!!||||||||||||:!!||||| AsnGluIlePheThrValIleValLeuGlyHisIleLeuValPheSerLeuLeuIl 1699886 : AACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGCCTTCTGAT : 1699942 287 : eCysLeuPheAlaTyrGlnGlyLeuLeu : 295 ||||||| !!!.!!:!|||! !|||:!! eCysLeuValGlyPheGlnValLeuVal 1699943 : ATGTCTGGTTGGATTCCAAGTGCTCGTA : 1699971 vulgar: gi|815927561|ref|XP_012248310.1| 147 295 . KQ414915.1 1699025 1699971 + 390 M 37 111 5 0 2 I 0 495 3 0 2 M 44 132 G 0 3 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699026 1699971 390 + . gene_id 5 ; sequence gi|815927561|ref|XP_012248310.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1699026 1699136 . + . KQ414915.1 exonerate:protein2genome:local exon 1699026 1699136 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699137 1699138 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699137 1699635 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699634 1699635 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699636 1699971 . + . KQ414915.1 exonerate:protein2genome:local exon 1699636 1699971 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699026 1699971 390 + . alignment_id 5 ; Query gi|815927561|ref|XP_012248310.1| ; Align 1699026 148 111 ; Align 1699636 185 132 ; Align 1699771 229 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927561|ref|XP_012248310.1| PREDICTED: odorant receptor 4-like isoform X2 [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 264 Query range: 183 -> 295 Target range: 1702013 -> 1702352 184 : GlnMetIleAsnMetTyrGlnIleAlaValThrTyrPheCysPheAspAsnIlePh : 202 |||:!::!:::!:!!|||!!.:!!!.!||| !|||.!!||||||||||||:!!!! GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 203 : eCysIleLeuAlaIleHisLeuAlaGlyGlnPheArgIleLeuArgTyrArgPheS : 221 .|||:!::!! !:!:||| !||| !|||||||||||||||!:!||||||!!.| uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 222 : erLysLeuCysAspIleGluHis<->GlnIleAsnGluLysAspMetGluLeuThr : 238 ||!!.||| !!|||! .!.... |||:!!:!!!!:!!.!!: ... !.!! erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1702179 239 : IleThrAsnTyrAlaHisThrPheTyrLysLysLeuLysMetTyrValArgHisHi : 257 :!::!!..!!:!|||.!.!.!! !|||||| !!!!|||! ! !||||||!!.|| LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHi 1702180 : CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACA : 1702236 258 : sGlnGluLeuIleAsnPheCysAspArgLeuGluAsnValTyrThrMetLeuIleL : 276 ||||.!.! !|||!..!:!||| !!||||||.!..!.:!!!:!|||:!::!!:!!| sGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValL 1702237 : TCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTAC : 1702293 277 : euGlyGlnValLeuValPheSerValLeuIleCysLeuPheAlaTyrGlnGlyLeu : 294 |||||!!.:!!||||||||||||:!!|||||||||||| !!!.!!:!|||! !||| euGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeu 1702294 : TCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTC : 1702347 295 : Leu : 295 :!! Val 1702348 : GTG : 1702352 vulgar: gi|815927561|ref|XP_012248310.1| 183 295 . KQ414915.1 1702013 1702352 + 264 M 45 135 G 0 3 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1702352 264 + . gene_id 6 ; sequence gi|815927561|ref|XP_012248310.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702014 1702352 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702352 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1702352 264 + . alignment_id 6 ; Query gi|815927561|ref|XP_012248310.1| ; Align 1702014 184 135 ; Align 1702152 229 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927561|ref|XP_012248310.1| PREDICTED: odorant receptor 4-like isoform X2 [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 253 Query range: 300 -> 394 Target range: 1702974 -> 1703256 301 : AlaArgArgSerIlePheIlePheHisLeuIleGlySerMetAlaLeuLeuPheMe : 319 ||||||||| !! !|||:!!||||||:!!:!!||||||:!:..!! !|||!!.:! AlaArgArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLeuLe 1702975 : GCGAGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATTGCT : 1703029 320 : tPheThrTyrSerCysAspGlyValIleGluHisSerGluLysValAlaIleGlyA : 338 :|||||||||||||||||||||:!!||||||.!.||| !!!.:!!!.!! !!.! uPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaI 1703030 : ATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGA : 1703086 339 : laTyrSerAlaLeuTrpThrIleMetProMetAsnLysProGlyLysMetLeuArg : 356 !||| !!.!! !|||! ! !:!!||||||:!!||| !!|||!:!! !|||||| leTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArg 1703087 : TATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGA : 1703140 357 : AsnAspLeuIleMetValIleGluArgSerArgArgValCysCysLeuThrAlaAs : 375 !..||||||! !|||||||||! !|||||||||!:! ! !!||||||||||||!: ArgAspLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSe 1703141 : AGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAG : 1703197 376 : nArgPhePheProValSerLeuGluThrTyrAsnLysIleLeuSerThrAlaAlaS : 394 ! !!||||||||||||||||||||||||! !!.!! !:!!!!!!:! !:!! !| rGlyPhePheProValSerLeuGluThrCysThrThrValPheAsnPheSerPheS 1703198 : CGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATTTCTCATTCT : 1703254 395 : er : 394 || er 1703255 : CT : 1703256 vulgar: gi|815927561|ref|XP_012248310.1| 300 394 . KQ414915.1 1702974 1703256 + 253 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702975 1703256 253 + . gene_id 7 ; sequence gi|815927561|ref|XP_012248310.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702975 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1702975 1703256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702975 1703256 253 + . alignment_id 7 ; Query gi|815927561|ref|XP_012248310.1| ; Align 1702975 301 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927561|ref|XP_012248310.1| PREDICTED: odorant receptor 4-like isoform X2 [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 173 Query range: 299 -> 400 Target range: 1682550 -> 1683051 300 : LeuAlaArgArgSerIlePheIlePheHisLeuIleGlySerMetAlaLeuLeuPh : 318 ||| !!:!|||! !:!:|||:!! !:!!!!!:!!|||.!!:!! :::|| LeuMetLysArgLeuLeuPheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePh 1682551 : TTGATGAAACGATTGTTGTTCCTAAATTACTTTCTCGGTGGAGTGATacagatatt : 1682605 319 : eMetPheThrTyrSerCysAspGlyValIleGluHisSerGluLysValAlaIleG : 337 |:::...||| !:!|||:!!! !:!!!!:|||!!.|||! :!!!.!! !! eLeuIleThrLeuAsnCysAsnAspIleMetGluGlnSerGlyAlaIleGlyThrA 1682606 : tttaataacccTAAATTGCAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAG : 1682662 338 : lyAlaTyrSerAlaLeuTrpThrIleMetProMetAsnLysProGlyLysMetLeu : 355 .! !||||||..! !||| !! ! ||| ..!!!! laIleTyrSerCysAsnTrpGluArgAsnValTyrAsnHis---PheTyrGlnPhe 1682663 : CGATCTACAGTTGTAATTGGGAGAGGAAtgtttataatcat---ttttaccAGTTC : 1682713 356 : ArgAsnAspLeuIleMetValIleGluArgSerArgArgValCysCysLeuThrAl : 374 |||!!.|||:!!!!:!!:|||!!:! !|||:!!!:!||| !|||! !:!!:!!|| ArgLysAspMetMetIleValMetValArgAlaLysArgProCysTyrIleSerAl 1682714 : AGAAAGGATATGATGATTGTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGC : 1682770 375 : aAsnArgPhePheProValSerLeuGluThrTyrAsnLys >>>> Target In : 388 | !:!|||||||||:!!|||||||||:!!!:!!..||| 201 aAlaLysPhePheProIleSerLeuGluSerPheThrLys++ 1682771 : AGCGAAATTCTTTCCAATCTCCCTTGAATCGTTCACGAaggt.............. : 1682814 389 : tron 1 >>>> IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArg : 400 bp :!:||||||.!!.!!|||||||||!:!|||||||||||| ++ValLeuSerAlaThrAlaSerTyrTyrThrLeuLeuArg 1682815 : ...........agGTGTTAAGTGCAACAGCATCTTATTATACACTGCTGCGT : 1683051 vulgar: gi|815927561|ref|XP_012248310.1| 299 400 . KQ414915.1 1682550 1683051 + 173 M 51 153 G 1 0 M 36 108 5 0 2 I 0 197 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682551 1683051 173 + . gene_id 8 ; sequence gi|815927561|ref|XP_012248310.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1682551 1682811 . + . KQ414915.1 exonerate:protein2genome:local exon 1682551 1682811 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1682812 1682813 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1682812 1683012 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1683011 1683012 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1683013 1683051 . + . KQ414915.1 exonerate:protein2genome:local exon 1683013 1683051 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1682551 1683051 173 + . alignment_id 8 ; Query gi|815927561|ref|XP_012248310.1| ; Align 1682551 300 153 ; Align 1682704 352 108 ; Align 1683013 388 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927561|ref|XP_012248310.1| PREDICTED: odorant receptor 4-like isoform X2 [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 150 -> 217 Target range: 1681725 -> 1682049 151 : AsnAlaGlyLysAsnAsnSerGluArgValLeuProPheAsnIleTrpLeu<->As : 168 ||| !||||||!:!:!!..!||||||:!!||||||||| .!! ! :!! || AsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAs 1681726 : AACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAA : 1681780 169 : nLeuProValSerMetSerProTyrTyrGluMetIlePheThrLeuGln >>>> : 185 |||||||..!|||:!!!!!||||||||||||::::::|||..!:!!:!! nLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681781 : CTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt..... : 1681833 186 : Target Intron 1 >>>> MetIleAsnMetTyrGlnIleAlaValThrTyrP : 196 120 bp ! :!!::!:!! !!. !.!:!! !!:!! ++ThrLeuSerValValHisSerGlyIleCysPheC 1681834 : ....................agACATTATCTGTGGTGCATTCGGGAATTTGTTTCT : 1681984 197 : heCysPheAspAsnIlePheCysIleLeuAlaIleHisLeuAlaGlyGlnPheArg : 214 !||||||||||||.!!.!.|||||||||::!!!:|||:!!!.!|||||||||!:! ysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLys 1681985 : GTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAG : 1682038 215 : IleLeuArg : 217 ||||||!:! IleLeuGln 1682039 : ATTTTACAA : 1682049 vulgar: gi|815927561|ref|XP_012248310.1| 150 217 . KQ414915.1 1681725 1682049 + 171 M 17 51 G 0 3 M 17 51 5 0 2 I 0 116 3 0 2 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681726 1682049 171 + . gene_id 9 ; sequence gi|815927561|ref|XP_012248310.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681726 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681726 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682049 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682049 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681726 1682049 171 + . alignment_id 9 ; Query gi|815927561|ref|XP_012248310.1| ; Align 1681726 151 51 ; Align 1681780 168 51 ; Align 1681951 185 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927561|ref|XP_012248310.1| PREDICTED: odorant receptor 4-like isoform X2 [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 149 -> 185 Target range: 1688053 -> 1688161 150 : AlaAsnAlaGlyLysAsnAsnSerGluArgValLeuProPheAsnIleTrpLeuAs : 168 |||||| !.!!::!|||!!.|||!!:|||||||||||||||!!.!!:|||:!!:! AlaAsnMetSerArgAsnLysSerAspArgValLeuProPheLysMetTrpValAs 1688054 : GCAAATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTGGGTCGA : 1688108 169 : nLeuProValSerMetSerProTyrTyrGluMetIlePheThrLeuGlnMet : 185 !! !|||:!!||| !!!||||||||||||:!!!!:||||||!!!|||:!: pTrpProLeuSerAspThrProTyrTyrGluLeuMetPheThrPheGlnVal 1688109 : TTGGCCGCTATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAGGTA : 1688161 vulgar: gi|815927561|ref|XP_012248310.1| 149 185 . KQ414915.1 1688053 1688161 + 117 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688054 1688161 117 + . gene_id 10 ; sequence gi|815927561|ref|XP_012248310.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1688054 1688161 . + . KQ414915.1 exonerate:protein2genome:local exon 1688054 1688161 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688054 1688161 117 + . alignment_id 10 ; Query gi|815927561|ref|XP_012248310.1| ; Align 1688054 150 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425900|ref|XP_003494268.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 610 Query range: 7 -> 296 Target range: 1697524 -> 1699977 8 : AspIleSerMetArgLeuSerAlaPhePheLeuLysHisIleGlyLeuTrpIleAl : 26 |||.!!:!!:!! !:!!!!!:!!|||!!.:!!||| !:!!|||||||||:!!|| AspPheAlaLeuLeuMetThrSerPheLeuMetLysIleValGlyLeuTrpLeuAl 1697525 : GATTTTGCTCTGTTAATGACGTCGTTTTTAATGAAGATCGTCGGTCTTTGGTTAGC : 1697579 27 : aAsnAspProAlaAspGluArgArgMetLysIleIlePheThrTyrThrIleTrpA : 45 |!!.||| ! !!!:||||||!:! ::! !! !!!.! !||||||:!: aLysAspSerLysGluGluArgLysArgArgTyrThrLeuIleTyrThrValValA 1697580 : GAAAGACAGCAAGGAGGAACGCAAGCGTCGGTACACTTTGATCTATACGGTGGTCG : 1697636 46 : snLeuIlePheGlyMetIleValLeuSerArgAspLeuTyrPheThrTrpPheTyr : 63 :!!:!:||||||:!! |||! !! !||||||!!!|||!:!:!!||| !! laIleLeuPheGlyValTrpValGlnPheArgAspPheTyrTyrSerTrpProAsn 1697637 : CGATTTTGTTTGGAGTGTGGGTGCAGTTCAGAGACTTCTATTACTCCTGGCCGAAT : 1697690 64 : AsnGly >>>> Target Intron 1 >>>> AspThrLeuTyrAlaLeuAla : 72 !||| 849 bp ||| ! !|||.!! !..! PheGly++ ++AspCysAlaTyrThrAlaCys 1697691 : TTTGGCgt.........................aggACTGTGCTTACACCGCTTGT : 1698566 73 : AsnThrMetSerLeuIleLeuSerSerValLysValCysValIleValMetHisLy : 91 |||! !:!:!!!||||||:!! ! !:!!|||:!!! !|||:!! !!!!:|||!: AsnIleLeuCysLeuIleMetValLeuLeuLysLeuPheValValPheIleHisAr 1698567 : AACATTCTCTGCCTGATTATGGTACTGTTAAAGCTGTTCGTTGTATTCATACACAG : 1698623 92 : sLysGluPheIleAsnLeuValValTyrMetGluGlnHisPheMetAlaValLysT : 110 !||||||||||||.!.|||:::||||||||| ::::::||| !:!!!!.| gLysGluPheIleGluLeuLeuValTyrMetTyrLysAsnPheTrpHisLeuAsnT 1698624 : GAAAGAATTCATCGAACTgcttgtatatatgtacaaaaatttttggcACCTCAATT : 1698680 111 : yrAspIleHisGluLysGluIleLeuAspAsnCysArgLysIleCysAlaLeuPhe : 128 ||||| !:!!||| ! !:!:|||.!.:!!||||||!:!||| !!.!!:!!! ! yrAspCysAsnGluLeuLeuLeuLeuGlnAspCysArgArgIleSerThrIleCys 1698681 : ACGATTGCAACGAACTACTACTGCTGCAAGACTGCAGAAGAATTAGCACTATATGT : 1698734 129 : IleSerSerValThrThrIleGlyIleCysAlaIleLeuSerTyrIleThrThrPr : 147 |||!!!! !:!!!.! ! !!.! ! !!.!!|||:!!||||||:!: !||||| IleThrLeuIleAsnPheCysAlaGlnGlyThrIleValSerTyrValLeuThrPr 1698735 : ATCACGTTGATTAACTTCTGTGCTCAAGGCACAATTGTCAGCTACGTGCTAACACC : 1698791 148 : oPheIle{A} >>>> Target Intron 2 >>>> {la}GlnIleGlyAsnA : 155 |.!!|||{|} 232 bp {||}...||||||...| oIleIle{A}++ ++{la}AsnIleGlyArgA 1698792 : TATTATA{G}gt.........................ag{ca}aatattggaagaa : 1699047 156 : snGluSerThrArgGluLeuProPheAsnMetTrpIleGlyIle<->LeuSerGln : 172 ||...||| !|||! !||||||||||||||||||:!!! !:!: |||||| ! snSerSerAspArgValLeuProPheAsnMetTrpValAspLeuProLeuSerVal 1699048 : aCAGTTCCGATAGAGTGCTCCCATTCAACATGTGGGTTGATTTGCCGCTGTCTGTG : 1699101 173 : SerProTyrTyrGluLeuIlePhePheAlaGln >>>> Target Intron 3 : 184 |||||| ||||||:!!:!:||| ! !||| 499 bp SerProThrTyrGluIleValPheValLeuGln++ 1699102 : TCACCAACGTACGAAATAGTGTTCGTGCTTCAGgt..................... : 1699139 185 : >>>> IleMetSerLeuSerTyrIleGlyIleCysTyrPheCysPheAspAsnVa : 200 :!!:!!||||||! !:!!:!!|||:!!||||||.!!||||||||||||:! ++ValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLe 1699140 : ....agGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCT : 1699684 201 : lPheCysValMetAlaIleHisLeuGlyGlyGlnPheArgIleLeuArgTyrArgP : 219 !!!.|||:!!||| !:!:||| !!.! !|||||||||||||||!:!||||||! uLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgL 1699685 : TTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGT : 1699741 220 : heSerGluLeuCysAsnIle<->LysTyrGlnIleSerGluGlnAspLysMetSer : 236 !.|||.!.||| !!:!!! !:! ! |||:!!..!!!:.!.!!:...! :!! euSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAla 1699742 : TATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCA : 1699795 237 : IleLeuThrLysHisValHisArgThrTyrGluThrPheArgLysTyrValGlnGl : 255 !|||:!!::: !!.!.!.!.! !|||:!!.!!|||!:!!!.! !|||!:!|| AlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGl 1699796 : GCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACA : 1699852 256 : nHisGlnAlaLeuIleAsnTyrTyrAsnSerLeuGluAsnValTyrThrValIleI : 274 ||||||| !! !|||!..|||! !:!!!!!|||.!..!.:!!!:!|||||||||: nHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleV 1699853 : ACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTG : 1699909 275 : leLeuIleGlnValLeuValPheSerValLeuIleCysLeuPheGlyTyrGlnVal : 292 !!||| !!!.:!!||||||||||||:!!|||||||||||| !!|||!:!|||||| alLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnVal 1699910 : TACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTG : 1699963 293 : LeuLeuAlaAsn : 296 |||:!!! !||| LeuValGluAsn 1699964 : CTCGTAGAAAAC : 1699977 vulgar: gi|350425900|ref|XP_003494268.1| 7 296 . KQ414915.1 1697524 1699977 + 610 M 58 174 5 0 2 I 0 845 3 0 2 M 84 252 S 0 1 5 0 2 I 0 228 3 0 2 S 1 2 M 19 57 G 0 3 M 14 42 5 0 2 I 0 495 3 0 2 M 42 126 G 0 3 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1697525 1699977 610 + . gene_id 1 ; sequence gi|350425900|ref|XP_003494268.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1697525 1697698 . + . KQ414915.1 exonerate:protein2genome:local exon 1697525 1697698 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1697699 1697700 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1697699 1698547 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1698546 1698547 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1698548 1698800 . + . KQ414915.1 exonerate:protein2genome:local exon 1698548 1698800 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1698801 1698802 . + . intron_id 2 ; splice_site "Gt" KQ414915.1 exonerate:protein2genome:local intron 1698801 1699032 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1699031 1699032 . + . intron_id 1 ; splice_site "Ag" KQ414915.1 exonerate:protein2genome:local cds 1699033 1699136 . + . KQ414915.1 exonerate:protein2genome:local exon 1699033 1699136 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699137 1699138 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699137 1699635 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1699634 1699635 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699636 1699977 . + . KQ414915.1 exonerate:protein2genome:local exon 1699636 1699977 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1697525 1699977 610 + . alignment_id 1 ; Query gi|350425900|ref|XP_003494268.1| ; Align 1697525 8 174 ; Align 1698548 66 252 ; Align 1699035 151 57 ; Align 1699095 170 42 ; Align 1699636 184 126 ; Align 1699765 226 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425900|ref|XP_003494268.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 570 Query range: 147 -> 398 Target range: 1694346 -> 1696248 148 : PheIleAlaGlnIleGlyAsnAsnGluSerThrArgGluLeuProPheAsnMetTr : 166 |||:!!|||.!.:!!|||!!.|||:!!||| !||| !||||||||||||||||| PheLeuAlaAsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTr 1694347 : TTTTTAGCAAATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTG : 1694401 167 : pIleGlyIle<->LeuSerGlnSerProTyrTyrGluLeuIlePhePheAlaGln : 184 |:!!! !.!! !.!! !|||||||||||||||:!!:!!|||.!! !||| pValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGln+ 1694402 : GGTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGg : 1694458 185 : >>>> Target Intron 1 >>>> IleMetSerLeuSerTyrIleGlyIleC : 193 409 bp ! !:!:!!!:!!! !:!!:!!||||||| + ++ThrLeuCysValTyrHisValGlyIleC 1694459 : t.........................agACACTTTGCGTGTACCATGTCGGTATAT : 1694894 194 : ysTyrPheCysPheAspAsnValPheCysValMetAlaIleHisLeuGlyGlyGln : 211 |||||.!.||||||||||||:!!.!! !!:!!:!! !:!!|||:!!!.! !||| ysTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGln 1694895 : GTTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAA : 1694948 212 : PheArgIleLeuArgTyrArgPheSerGluLeuCysAsnIleLysTyrGlnIleSe : 230 ||||||||||||!:!|||||||||! !.!.||| !!|||:!!! ! :!! !!! PheArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLysGlnTh 1694949 : TTTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAAC : 1695005 231 : rGluGlnAspLysMetSerIle<->LeuThrLysHisValHisArgThrTyrGluT : 248 !!!: ::::::...||| ! !|||!!. !..! ! !!:!||| ! rAspGlyArgGluLeuGluIleGlyTyrThrAsnPheThrValAspSerTyrLeuG 1695006 : AGACGGTcgagaattggaaattggtTACACAAATTTCACAGTCGATAGTTACTTAC : 1695062 249 : hrPheArgLysTyrValGlnGlnHisGlnAlaLeuIleAsnTyrTyrAsnSerLeu : 266 !!!.!:!!..! !|||||| ! ||||||||||||! !..!|||! !!!.!.!||| lnLeuLysSerCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeu 1695063 : AATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTG : 1695116 267 : GluAsnValTyrThrValIleIleLeuIleGlnValLeuValPheSerValLeuIl : 285 ||||||:!!!:!:!!:!!:!!:!:||| !||||||||| !!.!.:!!:!!:!!:! GluAsnIlePheSerLeuLeuValLeuGlyGlnValLeuPheLeuAlaMetValLe 1695117 : GAGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTACT : 1695173 286 : eCysLeuPheGlyTyrGlnValLeuLeu >>>> Target Intron 2 >>>> : 295 !|||||| ! |||||||||:!!!!!||| 415 bp uCysLeuValGlyTyrGlnLeuPheLeu++ + 1695174 : TTGCCTCGTGGGATATCAGCTATTTCTGgt.........................a : 1695616 296 : AlaAsnThrAsnSerAlaArgArgSerIlePheValPheLeuLeuIleGlyAlaL : 313 .!!:!!:!! !!:!!|||!.! ! !!!.|||.!! !||| !|||.!!| +ThrAspSerProProSerArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrL 1695617 : gACAGACTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTT : 1695672 314 : euSerLeuLeuPheMetPheThrTyrSerCysAspAspValIleGluHisSerAsp : 331 ||!!!! !|||||||||||||||||||||||||||! !:!!! !..!.!.||| euCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGluSerMet 1695673 : TGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATG : 1695726 332 : AsnValAlaIleGlyAlaTyrSerAlaLeuTrpThrIleMetProMetAsnLysHi : 350 :!!|||::!! !!.!!.!!:!:!! !! !|||.!!! !:!!||||||:!!!:!:! AspValSerArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAspArgAs 1695727 : GACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAA : 1695783 351 : sGlyLysMetLeuArgAsnAspLeuIleMetThrIleGluArgSerArgArgValC : 369 !||||||! :!!|||.!...!:!!:!!|||..!||| !||||||!.!||| !| nGlyLysSerValArgGlnSerMetLeuMetValIleMetArgSerAsnArgCysC 1695784 : TGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTT : 1695840 370 : ysCysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrLys > : 387 ||||||||||||||!:!||||||||||||||||||||||||||||||||| ! ysCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrGly++ 1695841 : GCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGgt. : 1695896 388 : >>> Target Intron 3 >>>> IleLeuSerThrAlaMetSerTyrPheThr : 396 319 bp :!!||||||||||||||||||||||||||| ++ValLeuSerThrAlaMetSerTyrPheThr 1695897 : ........................agGTCCTCAGCACTGCAATGTCATACTTTACA : 1696240 397 : LeuLeu : 398 |||||| LeuLeu 1696241 : CTACTG : 1696248 vulgar: gi|350425900|ref|XP_003494268.1| 147 398 . KQ414915.1 1694346 1696248 + 570 M 22 66 G 0 3 M 14 42 5 0 2 I 0 405 3 0 2 M 54 162 G 0 3 M 57 171 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694347 1696248 570 + . gene_id 2 ; sequence gi|350425900|ref|XP_003494268.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694347 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694347 1694457 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 2 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696248 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696248 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694347 1696248 570 + . alignment_id 2 ; Query gi|350425900|ref|XP_003494268.1| ; Align 1694347 148 66 ; Align 1694416 170 42 ; Align 1694867 184 162 ; Align 1695032 238 171 ; Align 1695618 295 276 ; Align 1696213 387 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425900|ref|XP_003494268.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 515 Query range: 147 -> 398 Target range: 1706992 -> 1709231 148 : PheIleAlaGlnIleGlyAsnAsnGluSerThrArgGluLeuProPheAsnMetTr : 166 ||| !! !...||||||...||||||||| !||| !||| ! !!|||.!.|| PheSerGluSerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTr 1706993 : TTTTCAGAAAgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTG : 1707047 167 : pIleGlyIle<->LeuSerGlnSerProTyrTyrGluLeuIlePhePheAlaGln : 184 ||||! !.!! !!!!..!!!!||||||||||||:!!:!!||| :!!||| pIleAspPheProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln+ 1707048 : GATTGACTTTCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGg : 1707104 185 : >>>> Target Intron 1 >>>> IleMetSerLeuSerTyrIleGlyIleC : 193 276 bp :!!.!.! !:!!! !|||:!! !!||| + ++ValPheIleValMetTyrValCysIleS 1707105 : t.........................agGTTTTTATCGTAATGTACGTTTGCATAA : 1707407 194 : ysTyrPheCysPheAspAsnValPheCysValMetAlaIleHisLeuGlyGlyGln : 211 !!|||.!!|||.!!|||||| !!.!.|||:!!!!: !:!!||| !!.! !||| erTyrLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGln 1707408 : GCTACCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAA : 1707461 212 : PheArgIleLeuArgTyrArgPheSerGluLeuCysAsnIleLysTyrGlnIleSe : 230 ||||||||||||!:!||||||.!.|||.!.:!!|||..! !!!. ! !::! .. PheArgIleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAs 1707462 : TTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcga : 1707518 231 : rGluGlnAspLysMetSerIleLeuThrLysHisValHisArgThrTyrGluThrP : 249 .::: ...||| ::: !!...:!! ! !!..! !|||! ! !| pLysIleSerLysLysThr------ProSerAsnSerAspGluCysTyrAlaLysP 1707519 : taaaatttcgaaaaaaaca------CCGTCCAATTCGGACGAATGCTACGCTAAGT : 1707569 250 : heArgLysTyrValGlnGlnHisGlnAlaLeuIleAsnTyrTyrAsnSerLeuGlu : 267 ||!:!!!.! !:!!|||||||||||||||||||||.!.|||! !|||..!|||:!! heLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGln 1707570 : TCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAA : 1707623 268 : AsnValTyrThrValIleIleLeuIleGlnValLeuValPheSerValLeuIleCy : 286 .!.|||!:! !:!!.!!:!:||| !|||||||||:!!||||||:!!|||!!:|| GluValPheGlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCy 1707624 : GAGGTGTTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTG : 1707680 287 : sLeuPheGlyTyrGlnValLeuLeu >>>> Target Intron 2 >>>> Al : 295 |||| !|||||| :!!:!!:!! 457 bp ! sLeuAspGlyTyr---LeuValMet++ ++Gl 1707681 : CCTCGATGGATAT---TTGGTGATGgt.........................agGA : 1708161 296 : aAsnThrAsnSerAlaArgArgSerIlePheValPheLeuLeuIleGlyAlaLeuS : 314 !:!!||| !! ! !!:!||| !! !|||:!!|||! !|||! |||..!|||! uAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuC 1708162 : AGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGT : 1708218 315 : erLeuLeuPheMetPheThrTyrSerCysAspAspValIleGluHisSerAspAsn : 332 !!! !|||!!.||||||||||||||||||||| !:!!|||..!.!.||| ||| ysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsn 1708219 : GCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAAC : 1708272 333 : ValAlaIleGlyAlaTyrSerAlaLeuTrpThrIleMetProMetAsnLysHisGl : 351 ||||||! !!.! !|||..!..!! !|||! ! !:!!||||||:!!!:! !|| ValAlaAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGl 1708273 : GTGGCCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGG : 1708329 352 : yLysMetLeuArgAsnAspLeuIleMetThrIleGluArgSerArgArgValCysC : 370 |::!|||||||||!!.||||||! !.!...!|||! !||||||||| ! !|||| yArgMetLeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCysC 1708330 : GCGAATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCT : 1708386 371 : ysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrLys >>>> : 387 ||||||||||| !|||||||||||||||||||||||||||||||||..! ysLeuThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708387 : GTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt.... : 1708439 388 : Target Intron 3 >>>> IleLeuSerThrAlaMetSerTyrPheThrLeu : 397 759 bp ||||||||||||||| !||||||||||||||| ++IleLeuSerThrAlaAlaSerTyrPheThrLeu 1708440 : .....................agATTTTAAGTACCGCAGCGTCATACTTCACACTG : 1709226 398 : Leu : 398 ||| Leu 1709227 : CTA : 1709231 vulgar: gi|350425900|ref|XP_003494268.1| 147 398 . KQ414915.1 1706992 1709231 + 515 M 22 66 G 0 3 M 14 42 5 0 2 I 0 272 3 0 2 M 53 159 G 2 0 M 52 156 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1706993 1709231 515 + . gene_id 3 ; sequence gi|350425900|ref|XP_003494268.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1706993 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1706993 1707103 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 3 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709231 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709231 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1706993 1709231 515 + . alignment_id 3 ; Query gi|350425900|ref|XP_003494268.1| ; Align 1706993 148 66 ; Align 1707062 170 42 ; Align 1707380 184 159 ; Align 1707539 239 156 ; Align 1707695 292 9 ; Align 1708161 295 276 ; Align 1709196 387 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425900|ref|XP_003494268.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 360 Query range: 232 -> 398 Target range: 1688466 -> 1690073 233 : AspLysMetSerIleLeuThrLysHisValHisArgThrTyrGluThrPheArgLy : 251 |||:!! !!!! !:!!|||:!!:!!..!:!!!:! !||| ! !.!.! ! ! AspGluArgThrAsnMetThrGluTyrThrAsnLysCysTyrThrLysLeuIleAs 1688467 : GACGAGCGAACGAACATGACCGAATACACGAACAAATGTTACACCAAGCTGATAGA : 1688521 252 : sTyrValGlnGlnHisGlnAlaLeuIleAsnTyrTyrAsnSerLeuGluAsnValT : 270 ! !:!!:!!.!.||||||:!!||||||.!.!:!! ! !.!||||||||||||| pCysIleLysAsnHisGlnSerLeuIleGluPheCysValLysLeuGluAsnValT 1688522 : TTGCATCAAAAATCATCAGTCGTTGATCGAGTTCTGCGTGAAACTCGAGAACGTGT : 1688578 271 : yrThrValIleIleLeuIleGlnValLeuValPheSerValLeuIleCysLeuPhe : 288 |||||:!!! !|||||| !!!.:!!:!!|||||||||:!!|||!!:|||!!! ! yrThrLeuThrIleLeuGlyHisIleValValPheSerLeuLeuMetCysPheAsp 1688579 : ACACGTTGACTATACTCGGCCACATAGTGGTCTTCAGCTTGTTGATGTGCTTCGAC : 1688632 289 : GlyTyrGlnValLeuLeu >>>> Target Intron 1 >>>> AlaAsnThr : 297 !|||:!!|||:!!||| 816 bp |||!!...! ThrTyrGluValValLeu++ ++AlaLysVal 1688633 : ACGTACGAGGTAGTTCTGgt.........................agGCAAAGGTA : 1689475 298 : AsnSerAlaArgArgSerIlePheValPheLeuLeuIleGlyAlaLeuSerLeuLe : 316 !!!!.!!! !||| !||||||:!!|||! !:!!||||||::!!!!! !! :: ProThrThrThrArgLeuIlePheLeuPheHisMetIleGlySerPheIleHisIl 1689476 : CCTACCACGACGCGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCacat : 1689532 317 : uPheMetPheThrTyrSerCysAspAspValIleGluHisSerAspAsnValAlaI : 335 :......|||||||||||||||! !! !:!!||||||.!.||| :!!:!!|||! eIlePhePheThrTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleAlaT 1689533 : aattttcttcacgtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCAA : 1689589 336 : leGlyAlaTyrSerAlaLeuTrpThrIleMetProMetAsnLysHisGlyLysMet : 353 !!.!.!!|||:!!!.!:!!||||||:!!:!!|||||||||||| !||||||||| hrAlaThrTyrAlaGlyMetTrpThrValLeuProMetAsnLysValGlyLysMet 1689590 : CAGCAACGTATGCAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAATG : 1689643 354 : LeuArgAsnAspLeuIleMetThrIleGluArgSerArgArgValCysCysLeuTh : 372 :!!|||...:!!:!!! :!:! !! !! !|||||| !!:! !||||||:!!|| IleArgGlyAsnMetLysLeuMetThrValArgSerLeuGlnProCysCysIleTh 1689644 : ATACGAGGAAATATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAAC : 1689700 373 : rAlaAsnGlyPhePheProValSerLeuGluThrTyrThrLys >>>> Target : 387 ||||..!|||||||||||||||||||||:!!||| !||| ! 2 rAlaGlyGlyPhePheProValSerLeuLysThrAlaThrAla++ 1689701 : TGCTGGTGGATTCTTTCCTGTCTCCTTGAAAACTGCTACCGCGgt........... : 1689747 388 : Intron 2 >>>> IleLeuSerThrAlaMetSerTyrPheThrLeuLeu : 398 93 bp :!!:!!|||:!!.!!||||||||||||||||||:!! ++LeuMetSerSerThrMetSerTyrPheThrLeuMet 1689748 : ..............agCTAATGAGTTCCACAATGTCGTATTTCACGCTCATG : 1690073 vulgar: gi|350425900|ref|XP_003494268.1| 232 398 . KQ414915.1 1688466 1690073 + 360 M 62 186 5 0 2 I 0 812 3 0 2 M 92 276 5 0 2 I 0 289 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688467 1690073 360 + . gene_id 4 ; sequence gi|350425900|ref|XP_003494268.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688467 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688467 1688652 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690073 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690073 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688467 1690073 360 + . alignment_id 4 ; Query gi|350425900|ref|XP_003494268.1| ; Align 1688467 233 186 ; Align 1689469 295 276 ; Align 1690038 387 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425900|ref|XP_003494268.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 276 Query range: 180 -> 294 Target range: 1702007 -> 1702352 181 : PheAlaGlnIleMetSerLeuSerTyrIleGlyIleCysTyrPheCysPheAspAs : 199 |||||||||:!!:!!||||||! !:!!:!!|||:!!||||||.!!||||||||||| PheAlaGlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAs 1702008 : TTTGCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAA : 1702062 200 : nValPheCysValMetAlaIleHisLeuGlyGlyGlnPheArgIleLeuArgTyrA : 218 |:!!!!.|||:!!||| !:!:||| !!.! !|||||||||||||||!:!|||| nLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrA 1702063 : CCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACA : 1702119 219 : rgPheSerGluLeuCysAsnIle<->LysTyrGlnIleSerGluGlnAspLysMet : 235 ||!!.|||.!.||| !!:!!! !:! ! |||:!!..!!!:.!.!!:...! rgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSer 1702120 : GGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGC : 1702173 236 : SerIleLeuThrLysHisValHisArgThrTyrGluThrPheArgLysTyrValGl : 254 :!! !|||:!!::: !!.!.!.!.! !|||:!!.!!|||!:!!!.! !|||!: AlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValAr 1702174 : GCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACG : 1702230 255 : nGlnHisGlnAlaLeuIleAsnTyrTyrAsnSerLeuGluAsnValTyrThrValI : 273 !||||||||| !! !|||!..|||! !:!!!!!|||.!..!.:!!!:!||||||| gGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValI 1702231 : ACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCA : 1702287 274 : leIleLeuIleGlnValLeuValPheSerValLeuIleCysLeuPheGlyTyrGln : 291 ||:!!||| !!!.:!!||||||||||||:!!|||||||||||| !!|||!:!||| leValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGln 1702288 : TTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAA : 1702341 292 : ValLeuLeu : 294 ||||||:!! ValLeuVal 1702342 : GTGCTCGTG : 1702352 vulgar: gi|350425900|ref|XP_003494268.1| 180 294 . KQ414915.1 1702007 1702352 + 276 M 45 135 G 0 3 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702008 1702352 276 + . gene_id 5 ; sequence gi|350425900|ref|XP_003494268.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702008 1702352 . + . KQ414915.1 exonerate:protein2genome:local exon 1702008 1702352 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702008 1702352 276 + . alignment_id 5 ; Query gi|350425900|ref|XP_003494268.1| ; Align 1702008 181 135 ; Align 1702146 226 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425900|ref|XP_003494268.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 250 Query range: 299 -> 393 Target range: 1702974 -> 1703256 300 : AlaArgArgSerIlePheValPheLeuLeuIleGlyAlaLeuSerLeuLeuPheMe : 318 ||||||||| !! !|||||||||! !:!!:!!|||::!|||!!!! !|||!!.:! AlaArgArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLeuLe 1702975 : GCGAGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATTGCT : 1703029 319 : tPheThrTyrSerCysAspAspValIleGluHisSerAspAsnValAlaIleGlyA : 337 :||||||||||||||||||! !:!!||||||.!.||| |||:!!!.!! !!.! uPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaI 1703030 : ATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGA : 1703086 338 : laTyrSerAlaLeuTrpThrIleMetProMetAsnLysHisGlyLysMetLeuArg : 355 !||| !!.!! !|||! ! !:!!||||||:!!||| !|||!:!! !|||||| leTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArg 1703087 : TATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGA : 1703140 356 : AsnAspLeuIleMetThrIleGluArgSerArgArgValCysCysLeuThrAlaAs : 374 !..||||||! !|||..!|||! !|||||||||!:! ! !!||||||||||||!: ArgAspLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSe 1703141 : AGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAG : 1703197 375 : nGlyPhePheProValSerLeuGluThrTyrThrLysIleLeuSerThrAlaMetS : 393 !|||||||||||||||||||||||||||! !|||! !:!!!!!!:! !:!!.!.| rGlyPhePheProValSerLeuGluThrCysThrThrValPheAsnPheSerPheS 1703198 : CGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATTTCTCATTCT : 1703254 394 : er : 393 || er 1703255 : CT : 1703256 vulgar: gi|350425900|ref|XP_003494268.1| 299 393 . KQ414915.1 1702974 1703256 + 250 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702975 1703256 250 + . gene_id 6 ; sequence gi|350425900|ref|XP_003494268.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702975 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1702975 1703256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702975 1703256 250 + . alignment_id 6 ; Query gi|350425900|ref|XP_003494268.1| ; Align 1702975 300 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425900|ref|XP_003494268.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 241 Query range: 299 -> 390 Target range: 1712384 -> 1712657 300 : AlaArgArgSerIlePheValPheLeuLeuIleGlyAlaLeuSerLeuLeuPheMe : 318 !.!!:!!:!! ||||||...||| ||| |||..!:!!!!!! !|||.!.|| GlyLysGlnMetIlePheThrPheHisLeuAlaGlyCysMetCysGlnLeuLeuMe 1712385 : GGTAAACAGAtgattttcacgtttcacctAGCGGGATGTATGTGTCAATTGCTGAT : 1712439 319 : tPheThrTyrSerCysAspAspValIleGluHisSerAspAsnValAlaIleGlyA : 337 ||||||||||||||||||| !:!!||| !.!.||| ||||||.!! !!.!! tPheThrTyrSerCysAspCysIleIleThrGluSerLeuAsnValThrGluAlaV 1712440 : GTTTACGTACAGCTGCGATTGTATAATAACGGAAAGTTTGAACGTGACGGAAGCGG : 1712496 338 : laTyrSerAlaLeuTrpThrIleMetProMetAsnLysHisGlyLysMetLeuArg : 355 .!|||..!!.!! !||| !! !:!!||||||!:!! !...|||!:!|||:!!||| alTyrAspGlyProTrpProArgLeuProMetSerThrArgGlyArgMetIleArg 1712497 : TGTACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGAAGAATGATAAGG : 1712550 356 : AsnAspLeuIleMetThrIleGluArgSerArgArgValCysCysLeuThrAlaAs : 374 !!.|||||||||:!:..!||| !||||||||| ! !|||||||||||||||!. LysAspLeuIleLeuValIleIleArgSerArgValProCysCysLeuThrAlaAr 1712551 : AAGGATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTGCTTGACCGCCAG : 1712607 375 : nGlyPhePheProValSerLeuGluThrTyrThrLysIleLeuSerThr : 390 .||||||||| !:!!|||||||||||||||||||||:!!:!!..!:!! gGlyPhePheValIleSerLeuGluThrTyrThrLysValIleAspSer 1712608 : AGGATTCTTCGTAATATCTTTGGAAACGTATACGAAGGTAATTGACTCT : 1712657 vulgar: gi|350425900|ref|XP_003494268.1| 299 390 . KQ414915.1 1712384 1712657 + 241 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712385 1712657 241 + . gene_id 7 ; sequence gi|350425900|ref|XP_003494268.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1712385 1712657 . + . KQ414915.1 exonerate:protein2genome:local exon 1712385 1712657 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712385 1712657 241 + . alignment_id 7 ; Query gi|350425900|ref|XP_003494268.1| ; Align 1712385 300 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425900|ref|XP_003494268.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 228 Query range: 180 -> 299 Target range: 1711876 -> 1712242 181 : PheAlaGlnIleMetSerLeuSerTyrIleGlyIleCysTyrPheCysPheAspAs : 199 |||||||||:!!:!:||| !! ! ! ||||||:!: !!||| !||||||||||| PheAlaGlnValLeuSerAlaTyrGlnIleGlyValSerTyrGlyCysPheAspAs 1711877 : TTTGCACAGGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGGTTGCTTCGACAA : 1711931 200 : nValPheCysValMetAlaIleHisLeuGlyGlyGlnPheArgIleLeuArgTyrA : 218 ||||.!.|||:!!||| !:!!||||||!.! !|||||||||||||||!:!:!!| nValLeuCysIleMetAsnLeuHisLeuAlaThrGlnPheArgIleLeuGlnHisA 1711932 : CGTTCTATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAATACTGCAACATA : 1711988 219 : rgPheSerGluLeuCysAsnIleLys<->TyrGlnIleSerGluGlnAspLysMet : 235 ||.!. !.!.:!! !..!:!:||| ! |||! ! !!|||:!!! !:!!! ! rgLeuValAsnIleAsnGlyLeuLysSerLysGlnThrProGluLysGlyGluThr 1711989 : GACTGGTGAATATAAACGGTCTGAAGAGCAAACAGACACCGGAGAAAGGTGAAACG : 1712042 236 : SerIleLeu<-><->ThrLysHisValHisArgThrTyrGluThrPheArgLysTy : 252 ||||||:!! |||:!! !!.! !!!.!:!!|||!!:..!|||!:!!:!! SerIleIleAspSerThrGluPheAlaAspAsnSerTyrAspValPheLysArgCy 1712043 : TCGATTATAGATTCGACAGAATTTGCGGATAACTCTTACGACGTTTTCAAAAGATG : 1712099 253 : rValGlnGlnHisGlnAlaLeuIleAsnTyrTyrAsnSerLeuGluAsnValTyrT : 271 !|||!::|||||||||:!!|||!!: !!:!! ......||||||...:::!:!! sValArgGlnHisGlnSerLeuMetAlaPheCysGluLysLeuGluGluMetPheS 1712100 : CGTTCGTCAACATCAATCTCTGATGGCTTTCTgcgagaaactcgaagaaatgTTCA : 1712156 272 : hrValIleIleLeuIleGlnValLeuValPheSerValLeuIleCysLeuPheGly : 289 :!:!!||||||||| |||:!!||||||||||||:!!!!!!!:|||||| !! ! erMetIleIleLeuGlyGlnLeuLeuValPheSerIlePheMetCysLeuAspVal 1712157 : GTATGATTATACTGGGGCAATTGTTAGTGTTCAGTATTTTTATGTGTCTCGACGTG : 1712210 290 : TyrGlnValLeuLeuAlaAsnThrAsnSer : 299 ! !||||||||||||!.!!:!:!!! !||| CysGlnValLeuLeuValSerSerIleSer 1712211 : TGCCAAGTACTTCTGGTTAGTTCAATTAGC : 1712242 vulgar: gi|350425900|ref|XP_003494268.1| 180 299 . KQ414915.1 1711876 1712242 + 228 M 46 138 G 0 3 M 12 36 G 0 6 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711877 1712242 228 + . gene_id 8 ; sequence gi|350425900|ref|XP_003494268.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1711877 1712242 . + . KQ414915.1 exonerate:protein2genome:local exon 1711877 1712242 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711877 1712242 228 + . alignment_id 8 ; Query gi|350425900|ref|XP_003494268.1| ; Align 1711877 181 138 ; Align 1712018 227 36 ; Align 1712060 239 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425900|ref|XP_003494268.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 168 Query range: 300 -> 398 Target range: 1682556 -> 1683048 301 : ArgArgSerIlePheValPheLeuLeuIleGlyAlaLeuSerLeuLeuPheMetPh : 319 !:!|||! !:!:|||:!! !! !!!!:!!|||!.!:!!! :::|||:::.. LysArgLeuLeuPheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePheLeuIl 1682557 : AAACGATTGTTGTTCCTAAATTACTTTCTCGGTGGAGTGATacagatatttttaat : 1682611 320 : eThrTyrSerCysAspAspValIleGluHisSerAspAsnValAlaIleGlyAlaT : 338 .||| !:!|||:!!|||:!!!!:|||!!.|||! ! !:!!!.!! !!.! !| eThrLeuAsnCysAsnAspIleMetGluGlnSerGlyAlaIleGlyThrAlaIleT 1682612 : aacccTAAATTGCAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAGCGATCT : 1682668 339 : yrSerAlaLeuTrpThrIleMetProMetAsnLysHisGlyLysMetLeuArgAsn : 356 |||||..! !||| !! ! ||| ||| ..!!!!|||!!. yrSerCysAsnTrpGluArgAsnValTyrAsn---HisPheTyrGlnPheArgLys 1682669 : ACAGTTGTAATTGGGAGAGGAAtgtttataat---catttttaccAGTTCAGAAAG : 1682719 357 : AspLeuIleMetThrIleGluArgSerArgArgValCysCysLeuThrAlaAsnGl : 375 |||:!!!!:!!:..!!!:! !|||:!!!:!||| !|||! !:!!:!!||| AspMetMetIleValMetValArgAlaLysArgProCysTyrIleSerAlaAlaLy 1682720 : GATATGATGATTGTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGCAGCGAA : 1682776 376 : yPhePheProValSerLeuGluThrTyrThrLys >>>> Target Intron 1 : 387 !|||||||||:!!|||||||||:!!!:!|||||| 201 bp sPhePheProIleSerLeuGluSerPheThrLys++ 1682777 : ATTCTTTCCAATCTCCCTTGAATCGTTCACGAaggt.................... : 1682814 388 : >>>> IleLeuSerThrAlaMetSerTyrPheThrLeuLeu : 398 :!:||||||.!!.!! ||||||!:!||||||||| ++ValLeuSerAlaThrAlaSerTyrTyrThrLeuLeu 1682815 : .....agGTGTTAAGTGCAACAGCATCTTATTATACACTGCTG : 1683048 vulgar: gi|350425900|ref|XP_003494268.1| 300 398 . KQ414915.1 1682556 1683048 + 168 M 48 144 G 1 0 M 37 111 5 0 2 I 0 197 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682557 1683048 168 + . gene_id 9 ; sequence gi|350425900|ref|XP_003494268.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1682557 1682811 . + . KQ414915.1 exonerate:protein2genome:local exon 1682557 1682811 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1682812 1682813 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1682812 1683012 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1683011 1683012 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1683013 1683048 . + . KQ414915.1 exonerate:protein2genome:local exon 1683013 1683048 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1682557 1683048 168 + . alignment_id 9 ; Query gi|350425900|ref|XP_003494268.1| ; Align 1682557 301 144 ; Align 1682701 350 111 ; Align 1683013 387 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425900|ref|XP_003494268.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 152 -> 226 Target range: 1681737 -> 1682079 153 : GlyAsnAsnGluSerThrArgGluLeuProPheAsnMetTrpIleGlyIleLeuSe : 171 .!!:!!.!.|||!!!! !! ! !!!!||||||!..:!!!::! ! ! ! !|| SerAspGluGluArgIleLeuProPheProPheArgValPheAsnLeuProThrSe 1681738 : AGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAACTTGCCTACGTC : 1681792 172 : rGlnSerProTyrTyrGluLeuIlePhePheAlaGln >>>> Target Intro : 184 | !!!!||||||||||||::::::||| ! !:!! 120 bp rLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681793 : TTTGACGCCgtattatgaaatattgttcGTGATAGAGgt................. : 1681833 185 : n 1 >>>> IleMetSerLeuSerTyrIleGlyIleCysTyrPheCysPheAspA : 199 ! !:!:|||:!! !:!! |||||||||!:!! !|||||||||| ++ThrLeuSerValValHisSerGlyIleCysPheCysCysPheAspA 1681834 : ........agACATTATCTGTGGTGCATTCGGGAATTTGTTTCTGTTGTTTCGACA : 1681996 200 : snValPheCysValMetAlaIleHisLeuGlyGlyGlnPheArgIleLeuArgTyr : 217 || !!.!.|||:!!:!!::!!!:|||:!!||||||||||||!:!||||||!:! !! snPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLysIleLeuGlnAsn 1681997 : ATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAGATTTTACAAAAC : 1682050 218 : ArgPheSerGluLeuCysAsnIleLys : 226 !:!.!!..! !:!!! !:! ||| LysLeuGlnThrValLeuSerGluLys 1682051 : AAACTCCAAACAGTATTGAGTGAGAAa : 1682079 vulgar: gi|350425900|ref|XP_003494268.1| 152 226 . KQ414915.1 1681737 1682079 + 151 M 31 93 5 0 2 I 0 116 3 0 2 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681738 1682079 151 + . gene_id 10 ; sequence gi|350425900|ref|XP_003494268.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681738 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681738 1681830 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682079 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682079 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681738 1682079 151 + . alignment_id 10 ; Query gi|350425900|ref|XP_003494268.1| ; Align 1681738 153 93 ; Align 1681951 184 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425900|ref|XP_003494268.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 0 -> 61 Target range: 1692073 -> 1692256 1 : MetGlnThrGluGlnGluLeuAspIleSerMetArgLeuSerAlaPhePheLeuLy : 19 |||!!. !! !|||... !|||||||||!!: !! !||| !|||!!.:!!|| MetHisLeuValGlnSerLysAspIleSerIleValTrpSerPhePheLeuMetLy 1692074 : ATGCATTTAGTGCAGAGTAAAGATATCTCGATCGTTTGGTCGTTCTTTTTGATGAA : 1692128 20 : sHisIleGlyLeuTrpIleAlaAsnAspProAlaAspGluArgArgMetLysIleI : 38 | !:!!|||||||||:!!||| !||| !|||!!::!!||||||! !!..!! sIleValGlyLeuTrpLeuAlaAlaAspGluAlaGluGlnArgArgArgAsnPheA 1692129 : AATCGTAGGTCTGTGGCTAGCCGCCGACGAGGCTGAACAACGTCGGAGAAATTTCG : 1692185 39 : lePheThrTyrThrIleTrpAsnLeuIlePheGlyMetIleValLeuSerArgAsp : 56 .!.! !||||||:!: :!!.!!.!!!.! ! !:!! !! !|||||| laLeuIleTyrThrLeuAsnAlaIlePheIleAlaSerCysIleAlaMetArgAsp 1692186 : CGCTGATTTACACGCTGAACGCGATTTTTATCGCTTCGTGTATAGCAATGAGAGAT : 1692239 57 : LeuTyrPheThrTrp : 61 :!!|||!:!:!!||| IleTyrTyrSerTrp 1692240 : ATATACTATTCCTGG : 1692256 vulgar: gi|350425900|ref|XP_003494268.1| 0 61 . KQ414915.1 1692073 1692256 + 119 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1692074 1692256 119 + . gene_id 11 ; sequence gi|350425900|ref|XP_003494268.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1692074 1692256 . + . KQ414915.1 exonerate:protein2genome:local exon 1692074 1692256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1692074 1692256 119 + . alignment_id 11 ; Query gi|350425900|ref|XP_003494268.1| ; Align 1692074 1 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427266|ref|XP_003494705.1| PREDICTED: odorant receptor 49a-like [Bombus impatiens] Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 122 -> 241 Target range: 1578 -> 1932 123 : LeuGluGluValThrIleArgGlySerLysMetAlaLysLeuTyrArgAsnThrLeuLeuIl : 143 |||.!.!!: !|||:!! ! !!!! ! !!:!.!|||! !! ! ! !.! !:!!:! LeuAsnAspGlnThrValTyrPheThrTyrIleValLysTyrSerIleValAsnAlaIleVa 1579 : TTAAACGACCAAACTGTTTATTTTACGTACATTGTCAAATATTCGATAGTGAACGCGATCGT : 1639 144 : eCysMetValLeuPheLeuLeuValProLeuLeuProProMetLeuAspIleValLeuProL : 164 !|||:!::!!||||||:!!! !..!|||:!! !|||! !!!:|||||||||:!!|||||| lCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProL 1640 : TTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGA : 1702 165 : euAsnGluThrArgProArgGlnGlnIleLeuAsnValAsnTyrValIlePheAspSerAsn : 184 !||||||:!!||| ! ! ! ! |||! ! !.! ||| !.!! !|||..!:!! ysAsnGluSerArgAspValAlaTyrIleTyrProAla---TyrTyrPheThrAspGluHis 1703 : AAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCC---TATTATTTCACCGACGAGCAT : 1759 185 : AsnTyrPhePheTyrValTyrLeuGlnLeuSerTrpThrSerValValValSerIleIleIl : 205 !!.||| ! ! |||:!! ! !!!.:!!:!!! ..!! !:!!||||||! ! !:!: LysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTy 1760 : AAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTA : 1822 206 : eValThrValAspSerLeuLeuMetLeuIleValHisHisAsnSerGlyLeuPheValValC : 226 ! !!.!! !|||!!! !! !!!:! !:!!|||!!.|||..!!!!||||||!!.!.!|||! rPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValS 1823 : CTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGT : 1885 227 : ysGlyHisGlnIleGlnLysAsnThrArgHisLeuAsnSerPheThr : 241 !||| :::|||:::...||| ! ! |||||| !!|||!:! erGly***LysIleArgSerAsnAspSer***LeuAsnProPheSer 1886 : CCGGgtaaaaaattcgatcgaacgattCGTAGCTCAACCCTTTCAGT : 1932 vulgar: gi|350427266|ref|XP_003494705.1| 122 241 . KQ414921.1 1578 1932 + 141 M 54 162 G 1 0 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1579 1932 141 + . gene_id 1 ; sequence gi|350427266|ref|XP_003494705.1| ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1579 1932 . + . KQ414921.1 exonerate:protein2genome:local exon 1579 1932 . + . insertions 0 ; deletions 1 KQ414921.1 exonerate:protein2genome:local similarity 1579 1932 141 + . alignment_id 1 ; Query gi|350427266|ref|XP_003494705.1| ; Align 1579 123 162 ; Align 1741 178 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427979|ref|XP_003494946.1| PREDICTED: odorant receptor 67c-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 368 Query range: 137 -> 351 Target range: 806514 -> 807593 138 : LeuProAspAsnLeuTyrPheMetValPheIleIleGluTyrLeuMetLeuLeuPheT : 157 |||||| .!.! !:!! !! |||!!.:!::!::!! :!! :!!!!!|||! LeuProLeuGlnHisHisValCysValLeuLeuLeuGlnGlyMetHisIlePhePheA 806515 : TTACCGTTGCAGCATCACGTCTGCGTGTTACTGCTGCAAGGGATGCACATTTTCTTCA : 806572 158 : hrSerThrGlyAsnLeuGlySerAspSerLeuLeuPheGlyIleIlePheHisLeuCy : 176 .!:!!..!!.!:!!! !|||!:!|||.!!|||!!!|||.!!:!:! .!.|||||||| snAlaValAlaHisCysGlyAsnAspGlyLeuPhePheSerLeuThrMetHisLeuCy 806573 : ACGCCGTGGCTCACTGCGGCAACGACGGCCTCTTCTTCAGCCTGACGATGCATCTGTG : 806629 177 : sGlyGlnValGluIleLeuLysLeuGluPheAsnLysLeuGlyAsnGluAsnGluArg : 195 ||||||| !!||||||||||||:!!.!..!. :!!:!!! ! !||| ! sGlyGlnPheGluIleLeuLysMetAsnLeuAlaGluIleGluPheGluAlaIleAla 806630 : CGGTCAGTTTGAAATTCTGAAGATGAATCTGGCGGAGATCGAGTTCGAGGCGATCGCT : 806686 196 : IleMetGluArgPheIleValLeuIleLysArgHisValTyrLeuLeuAsnLeuAlaL : 215 ! !:!!|||.!! !||||||:!:||||||||| ! ! ||| ! |||.!!! CysArgLysArgIleGlyValLeuValLysArgHisCysLysLeuAlaValLeuThrA 806687 : TGTCGGAAGCGAATCGGCGTTCTCGTGAAACGACACTGCAAACTGGCGGTGTTGACCA : 806746 216 : ysMetLeuAsnGluThrIleSerSerValLeuValValGlnLeuPheThrSerCysIl : 234 !. |||.!.:!!!:!.!!|||! !:!!:!!:!!|||||||||.!.! !|||...:! snAspLeuGluGlnSerPheSerMetIleIleLeuValGlnLeuMetMetSerAlaLe 806747 : ACGATCTCGAGCAGAGCTTCAGTATGATTATTCTGGTGCAACTCATGATGAGTGCGTT : 806803 235 : eLeuIleCysThrThr{G} >>>> Target Intron 1 >>>> {ly}PheGln : 242 :|||||||||..! !{|} 437 bp {||}||| uLeuIleCysValGlu{G}++ ++{ly}PheVal 806804 : GCTAATTTGCGTAGAA{G}gt.........................ag{GT}TTCGTC : 807264 243 : PheIleLeuAspLeuSerIleGlyAsnIleValMetAlaMetLysThrLeuIleValM : 262 |||:!::!!! !||||||! !:!!! !||| |||:!!!:!!:!!!!:!!:!!| PheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuM 807265 : TTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGA : 807324 263 : etSerCysLeuLeuValGlnLeuPheAlaTyrSerTyrValGlyGluTyrLeuLysAr : 281 || ! !||||||:!!||||||!:! !|||:!!|||!.!|||.!. |||:!! etValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSe 807325 : TGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTC : 807381 282 : gGlnMetGluSerValGlyAspSerValTyrPheCysSerTrpTyrHisIleProLys : 300 !!:!! |||..!:!!!.!.!.:!!!.!||| !! ! !||||||!.! !! ! ! rArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGly 807382 : GCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGG : 807438 301 : AsnValAlaLysGlyIleValPheValIleMetLysSerGlnAspProValSerLeuL : 320 :!!!.!|||!:!! !:!!:!!!!.:!!||| ::!.!!.!....||| ! !!:!!! HisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleT 807439 : CACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAA : 807498 321 : ysAlaGlyLysPhePheIleValAsnMetGluThrTyrMetAsnIleLeuLysThrSe : 339 !|||||||||||| !! :!!|||:!: |||!:!! !.!.|||||||||.!!|| hrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSe 807499 : CAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTC : 807555 340 : rMetSerTyrLeuSerValLeuArgValMetValAsn : 351 | |||||||||||||||:!!!:!||||||:!!:!! rGlySerTyrLeuSerValMetLysValMetMetAsp 807556 : TGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: gi|350427979|ref|XP_003494946.1| 137 351 . KQ414940.1 806514 807593 + 368 M 102 306 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806515 807593 368 + . gene_id 1 ; sequence gi|350427979|ref|XP_003494946.1| ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 806515 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806515 806821 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807258 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 806515 807593 368 + . alignment_id 1 ; Query gi|350427979|ref|XP_003494946.1| ; Align 806515 138 306 ; Align 807261 241 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427979|ref|XP_003494946.1| PREDICTED: odorant receptor 67c-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 10 -> 94 Target range: 806033 -> 806285 11 : LeuGlnMetGluMetTyrLeuAspSerGlyAspAlaGlyLysAsnValAspAlaLeuI : 30 |||...:!:|||:!:|||! ! !!!!! !||| !! ! ! !..:!!||||||!!!: LeuSerLeuGluValTyrArgHisCysLeuAspLeuAspAspThrMetAspAlaPheV 806034 : CTGTCTCTCGAAGTCTATCGTCATTGTCTGGACCTCGACGACACGATGGACGCGTTCG : 806091 31 : leLeuIleThrSerGlyValValAlaLeuSerLysIleIleTrpPheArgIleArgPr : 49 !!:!! ! !|||..!|||:!!::!|||||||||:!::!! !!.|||!!:!:! ! alMetAspLeuSerSerValIleSerLeuSerLysLeuLeuValLeuArgMetLysSe 806092 : TCATGGATCTGTCGTCGGTGATCAGTCTGTCCAAGCTGCTCGTTTTACGGATGAAATC : 806148 50 : oAlaGlyLeuIleSerAsnPheThrSerAlaValLysAspTyrGluGluLeuGluGly : 68 ! ! ! ! !:!! ! !! !||| !|||||||||!:: !.!.:!!!!: ! rLysHisThrTyrAlaLeuValAspSerIleValLysAspTrpThrAsnValAspHis 806149 : GAAACACACTTACGCTCTCGTCGATTCGATCGTCAAAGACTGGACGAACGTCGATCAT : 806205 69 : GlnAspLysArgLeuIleValArgLysHisAlaTyrIleGlyArgValAlaSerAlaT : 88 ... ! ! ..!! !|||:!!! !:!!:!! ! !!! !||||||:!!!.!||| !| SerArgHisGluArgIleMetThrGluTyrPheAsnLysGlyArgIleValSerLeuT 806206 : TCCCGCCACGAACGCATCATGACGGAGTACTTCAACAAAGGAAGAATCGTTTCGTTGA : 806265 89 : hrValIlePheSerSerTyr : 94 ||:!!:!!!:! !.!!||| hrIleLeuTyrLeuGlyTyr 806266 : CGATACTCTACCTTGGATAC : 806285 vulgar: gi|350427979|ref|XP_003494946.1| 10 94 . KQ414940.1 806033 806285 + 100 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806034 806285 100 + . gene_id 2 ; sequence gi|350427979|ref|XP_003494946.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 806034 806285 . + . KQ414940.1 exonerate:protein2genome:local exon 806034 806285 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 806034 806285 100 + . alignment_id 2 ; Query gi|350427979|ref|XP_003494946.1| ; Align 806034 11 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425706|ref|XP_003494207.1| PREDICTED: odorant receptor 13a-like, partial [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 281 -> 380 Target range: 807296 -> 807593 282 : ValGlyMetMetPhePheIleIleHisValIleTyrThrMetLeuHisLeuPheIleT : 301 |||!.! :!! !.!!:!!! :!!:!: ! !:!!:!!!!.|||!:!:!!| ValAlaAlaLeuArgSerPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuT 807297 : GTTGCAGCATTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTT : 807354 302 : yrCysTyrIleGlyGluMetLeuLeuGlyGluSerThrGlyValGlyGlnAlaAlaTy : 320 ||..!||| |||.!.! ||| !..!..!!!! !! !:!!!.!||||||||||| yrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTy 807355 : ACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTA : 807411 321 : rGluCysAspTrpTyrAspLeuProProLysAsnAlaIleSerLeuIleIleValIle : 339 |!!:! ! !|||||| !! !! ! ! ! |||! !..!|||:!!:!::!!||| rAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIle 807412 : TGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATC : 807468 340 : CysArgAlaLysValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuG : 359 !|||!.!!!. ! !!!:!!::|||||||||||||||||| !|||.!.!:!||| HisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuP 807469 : CATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTT : 807528 360 : luLeuPheAsnAlaValLeuLysThrSerAlaGlyTyrLeuSerValLeuLeuAlaMe : 378 !|||!!.! !:!!||||||.!!|||!.!..!||||||||||||:!! !!.!|| heThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSerValMetLysValMe 807529 : TCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAAT : 807585 379 : tLysAsp : 380 |! !||| tMetAsp 807586 : GATGGAC : 807593 vulgar: gi|350425706|ref|XP_003494207.1| 281 380 . KQ414940.1 807296 807593 + 164 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807297 807593 164 + . gene_id 1 ; sequence gi|350425706|ref|XP_003494207.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807297 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807297 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807297 807593 164 + . alignment_id 1 ; Query gi|350425706|ref|XP_003494207.1| ; Align 807297 282 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr174 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 131 -> 199 Target range: 32539 -> 32743 132 : IleLeuAspIleLeuIleProLeuAsnHisThrArgProArgThrValProIleValIle : 151 |||:!!|||:!::!! |||||||||.!.:!!|||! !!.!..!:!!||| !!.! ! IleIleAspValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGly 32540 : ATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGC : 32597 152 : AspTyrPheValAspGlnGlnLysPhePheAsnPhePheGlyMetHisLeuAsnLeuIle : 171 !!:|||||||||||||||||||||:::||| .!!!.!:!!|||:!! ! !! ! GluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThr 32598 : GAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACC : 32657 172 : ThrSerPheGlyGlyLeuGlyIleIleAlaThrGluThrIleSerMetAlaMetMetGln : 191 ..!!!!.!!||| ! !! ! !! |||...::::::||| ::: ...||| ValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPhe 32658 : GTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTC : 32717 192 : HisLeuCysGlyLeuLeuLysIle : 199 |||:!!|||!.! !!!!!!.||| HisValCysAlaLysPheAsnIle 32718 : CACGTTTGCGCCAAATTCAATATT : 32743 vulgar: AfOr174 131 199 . KQ415081.1 32539 32743 + 113 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32540 32743 113 + . gene_id 1 ; sequence AfOr174 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32540 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32540 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32540 32743 113 + . alignment_id 1 ; Query AfOr174 ; Align 32540 132 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr174 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 323 -> 379 Target range: 13671 -> 13909 324 : GluTrpTyrGluLeuProValIleGluGlnLysLeuIleLeuPheIleMetGlnAsnAsn : 343 :!!|||||| ! !||||||! !...|||||| !:!!||||||:!!||||||!!. ! LysTrpTyrThrAlaProValLysSerGlnLysThrValLeuPheLeuMetGlnLysPhe 13672 : AAATGGTACACAGCGCCGGTAAAATCCCAGAAAACGGTTCTGTTCCTCATGCAGAAATTC : 13729 344 : LeuLysAsnPheAsnPheValLeuLeuGlySerMetIleAlaSerTyrHisValTyrVal : 363 :!!||| ! !!!..!.! !:!!:!!..!!!!:!! !|||.!! !.!...!|||!.! IleLysProCysLysIleGluValIleSerThrValAlaAlaGlySerGluThrTyrAla 13730 : ATAAAACCGTGCAAGATAGAAGTTATATCCACGGTGGCCGCAGGTAGCGAGACGTACGCG : 13789 364 : Thr >>>> Target Intron 1 >>>> IleLeuHisThrAlaPheSerTyrPheM : 374 !:! 70 bp |||:!!!!.! !!.!||||||||||||| Ser++ ++IleValGlnIleGlyPheSerTyrPheM 13790 : AGCgt.........................agATTGTGCAGATCGGTTTCTCCTACTTCA : 13892 375 : etValIleTyrSerIle : 379 |||||:!!||||||:!: etValLeuTyrSerLeu 13893 : TGGTTCTCTACTCGTTG : 13909 vulgar: AfOr174 323 379 . KQ415081.1 13671 13909 + 102 M 41 123 5 0 2 I 0 66 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 13672 13909 102 + . gene_id 2 ; sequence AfOr174 ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 13672 13794 . + . KQ415081.1 exonerate:protein2genome:local exon 13672 13794 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 13795 13796 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 13795 13864 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 13863 13864 . + . intron_id 0 ; splice_site "aG" KQ415081.1 exonerate:protein2genome:local cds 13865 13909 . + . KQ415081.1 exonerate:protein2genome:local exon 13865 13909 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 13672 13909 102 + . alignment_id 2 ; Query AfOr174 ; Align 13672 324 123 ; Align 13865 365 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427266|ref|XP_003494705.1| PREDICTED: odorant receptor 49a-like [Bombus impatiens] Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 118 -> 241 Target range: 142 -> 508 119 : AspLeuTyrIleLeuGluGluValThrIleArgGlySerLysMetAlaLysLeuTyrArgAsnT : 140 ||| !! ! !|||.!.!!: !|||:!! ! !!!! ! !!:!.!|||! !! ! ! ! AspArgSerTyrLeuAsnAspGlnThrValTyrPheThrTyrIleValLysTyrSerIleValA 143 : GACAGATCTTATTTAAACGACCAAACTGTTTATTTTACGTACATTGTCAAATATTCGATAGTGA : 206 141 : hrLeuLeuIleCysMetValLeuPheLeuLeuValProLeuLeuProProMetLeuAspIleVa : 161 .! !:!!:!!|||:!::!!||||||:!!! !..!|||:!! !|||! !!!:|||||||||:! snAlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLe 207 : ACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTT : 269 162 : lLeuProLeuAsnGluThrArgProArgGlnGlnIleLeuAsnValAsnTyrValIlePheAsp : 182 !|||||| !||||||:!!||| ! ! ! ! |||! ! !.! ||| !.!! !||| uLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAla---TyrTyrPheThrAsp 270 : ACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCC---TATTATTTCACCGAC : 329 183 : SerAsnAsnTyrPhePheTyrValTyrLeuGlnLeuSerTrpThrSerValValValSerIleI : 204 ..!:!!!!.||| ! ! |||:!! ! !!!.:!!:!!! ..!! !:!!||||||! ! !: GluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrV 330 : GAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACG : 395 205 : leIleValThrValAspSerLeuLeuMetLeuIleValHisHisAsnSerGlyLeuPheValVa : 225 !: ! !!.!! !|||!!! !! !!!:! !:!!|||!!.|||..!!!!||||||!!.!.!|| alTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaVa 396 : TGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGT : 458 226 : lCysGlyHisGlnIleGlnLysAsnThrArgHisLeuAsnSerPheThr : 241 |! !||| :::|||:::...||| ! ! |||||| !!|||!:! lSerGly***LysIleArgSerAsnAspSer***LeuAsnProPheSer 459 : GTCCGGgtaaaaaattcgatcgaacgattCGTAGCTCAACCCTTTCAGT : 508 vulgar: gi|350427266|ref|XP_003494705.1| 118 241 . LHQN01023902.1 142 508 + 142 M 58 174 G 1 0 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 143 508 142 + . gene_id 1 ; sequence gi|350427266|ref|XP_003494705.1| ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 143 508 . + . LHQN01023902.1 exonerate:protein2genome:local exon 143 508 . + . insertions 0 ; deletions 1 LHQN01023902.1 exonerate:protein2genome:local similarity 143 508 142 + . alignment_id 1 ; Query gi|350427266|ref|XP_003494705.1| ; Align 143 119 174 ; Align 317 178 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr174 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 121 -> 200 Target range: 5002 -> 5239 122 : IlePhePheLeuSerIlePheGlyAsnAsnIleLeuAspIleLeuIleProLeuAsnHisTh : 142 :!!|||.!.! !! ! |||! !::: |||||||||||||||!!:|||||||||.!.|| LeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluTh 5003 : CTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGAC : 5063 143 : rArgProArgThrValProIleValIleAspTyrPheValAspGlnGlnLysPhePheAsnP : 163 |||| !!||| ! !! ! ! ! ! !!||||||||||||:!!.!.|||!:! ! !!! rArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrL 5064 : GCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACT : 5126 164 : hePheGlyMetHisLeuAsnLeuIleThrSerPheGlyGlyLeuGlyIleIleAlaThrGlu : 183 !..!!! ! !|||:!! !!|||:!!..! !.!. ! !! !! !.!! !||| !!!: euIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAsp 5127 : TGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGAT : 5186 184 : ThrIleSerMetAlaMetMetGlnHisLeuCysGlyLeuLeuLysIleSer : 200 .!!! !! !:!! ! :!!|||||| !|||||||||||| |||:!! AlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla 5187 : GCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCA : 5239 vulgar: AfOr174 121 200 . LHQN01025741.1 5002 5239 + 108 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5003 5239 108 + . gene_id 1 ; sequence AfOr174 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5003 5239 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5003 5239 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5003 5239 108 + . alignment_id 1 ; Query AfOr174 ; Align 5003 122 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427266|ref|XP_003494705.1| PREDICTED: odorant receptor 49a-like [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 140 -> 231 Target range: 4984 -> 5254 141 : LeuLeuIleCysMetValLeuPheLeuLeuValProLeuLeuProProMetLeuAspIleVa : 161 :!!! !:!!||| !.!||||||:!!! !:!!|||!!!:!! !!|||!!:|||||||||:! IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLe 4985 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCT : 5045 162 : lLeuProLeuAsnGluThrArgProArgGlnGlnIleLeuAsnValAsnTyrValIlePheA : 182 !:!!|||||||||||||||||| !!||| ! :!!! ! !.! !!||| !!:!! | uMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal---A 5046 : TATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC---G : 5105 183 : spSerAsnAsnTyrPhePheTyrValTyrLeuGlnLeuSerTrpThrSerValValValSer : 202 ||..!:!!!!.||| !!:!! :!! !!!.:!!! ! ..! !|||:!!:!!! ! spGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIle 5106 : ACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATC : 5165 203 : IleIleIleValThrValAspSerLeuLeuMetLeuIleValHisHisAsnSerGlyLeuPh : 223 !:!!.!! !.!! !|||:!! !! !:!!! ! !|||!!.||| !!!!||||||!! SerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLe 5166 : TCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTT : 5228 224 : eValValCysGlyHisGlnIleGln : 231 .!.!:!!...||| ! !:!!||| uAlaIleAlaGly***LeuValGln 5229 : GGCCATTGCAGGGTAATTAGTTCAA : 5254 vulgar: gi|350427266|ref|XP_003494705.1| 140 231 . LHQN01025741.1 4984 5254 + 118 M 40 120 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4985 5254 118 + . gene_id 1 ; sequence gi|350427266|ref|XP_003494705.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4985 5254 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4985 5254 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 4985 5254 118 + . alignment_id 1 ; Query gi|350427266|ref|XP_003494705.1| ; Align 4985 141 120 ; Align 5105 182 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425706|ref|XP_003494207.1| PREDICTED: odorant receptor 13a-like, partial [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 314 -> 368 Target range: 4369 -> 4207 315 : ValGlyGlnAlaAlaTyrGluCysAspTrpTyrAspLeuProProLysAsnAlaIleSerLe : 335 ||||||:!!!.!!.!||| ! ||||||||| !!||||||! !!:!!.. !:!!..!|| ValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLe 4369 : GTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTT : 4309 336 : uIleIleValIleCysArgAlaLysValSerPheGlnIleThrAlaGlyLysPheSerProP : 356 ||||:!::!!||| |||:!!!!.||| ! !!:!!|||||||||||||||... . uIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLysIlePheHisM 4308 : AATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaaaatattccata : 4246 357 : heSerLeuGluLeuPheAsnAlaValLeuLysThrSer : 368 ..|||||| ! !|||..!! !||| !:!!|||!:! etSerLeuTyrThrPheGlyAspValSerGluThrAsn 4245 : tgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 4208 vulgar: gi|350425706|ref|XP_003494207.1| 314 368 . LHQN01027980.1 4369 4207 - 113 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4208 4369 113 - . gene_id 1 ; sequence gi|350425706|ref|XP_003494207.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4208 4369 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4208 4369 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4208 4369 113 - . alignment_id 1 ; Query gi|350425706|ref|XP_003494207.1| ; Align 4370 315 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425706|ref|XP_003494207.1| PREDICTED: odorant receptor 13a-like, partial [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 308 -> 353 Target range: 1996 -> 1861 309 : LeuGlyGluSerThrGlyValGlyGlnAlaAlaTyrGluCysAspTrpTyrAspLeuProPr : 329 :!!||||||!!!||| !|||||| ! !!.!||| ! !!!:|||||| ||| !!! IleGlyGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGl 1996 : ATCGGAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCA : 1936 330 : oLysAsnAlaIleSerLeuIleIleValIleCysArgAlaLysValSerPheGlnIleThrA : 350 !|||!.!|||:!!.!!!!!:!!!!::!!|||! !|||:!!!..:!! !.!.:!!||||||| nLysThrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrA 1935 : AAAAACTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCG : 1873 351 : laGlyLysPhe : 353 ||||||||||| laGlyLysPhe 1872 : CTGGAAAATTC : 1862 vulgar: gi|350425706|ref|XP_003494207.1| 308 353 . LHQN01027980.1 1996 1861 - 105 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1862 1996 105 - . gene_id 2 ; sequence gi|350425706|ref|XP_003494207.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1862 1996 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1862 1996 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1862 1996 105 - . alignment_id 2 ; Query gi|350425706|ref|XP_003494207.1| ; Align 1997 309 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: AfOr174 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 121 -> 200 Target range: 5660 -> 5423 122 : IlePhePheLeuSerIlePheGlyAsnAsnIleLeuAspIleLeuIleProLeuAsnHisTh : 142 :!!|||.!.! !! ! |||! !::: |||||||||||||||!!:|||||||||.!.|| LeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluTh 5660 : CTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGAC : 5600 143 : rArgProArgThrValProIleValIleAspTyrPheValAspGlnGlnLysPhePheAsnP : 163 |||| !!||| ! !! ! ! ! ! !!||||||||||||:!!.!.|||!:! ! !!! rArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrL 5599 : GCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACT : 5537 164 : hePheGlyMetHisLeuAsnLeuIleThrSerPheGlyGlyLeuGlyIleIleAlaThrGlu : 183 !..!!! ! !|||:!! !!|||:!!..! !.!. ! !! !! !.!! !||| !!!: euIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAsp 5536 : TGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGAT : 5477 184 : ThrIleSerMetAlaMetMetGlnHisLeuCysGlyLeuLeuLysIleSer : 200 .!!! !! !:!! ! :!!|||||| !|||||||||||| |||:!! AlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla 5476 : GCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCA : 5424 vulgar: AfOr174 121 200 . LHQN01028732.1 5660 5423 - 106 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5424 5660 106 - . gene_id 1 ; sequence AfOr174 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5424 5660 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5424 5660 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5424 5660 106 - . alignment_id 1 ; Query AfOr174 ; Align 5661 122 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350427266|ref|XP_003494705.1| PREDICTED: odorant receptor 49a-like [Bombus impatiens] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 140 -> 231 Target range: 5678 -> 5408 141 : LeuLeuIleCysMetValLeuPheLeuLeuValProLeuLeuProProMetLeuAspIleVa : 161 :!!! !:!!||| !.!||||||:!!! !:!!|||!!!:!! !!|||!!:|||||||||:! IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLe 5678 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCT : 5618 162 : lLeuProLeuAsnGluThrArgProArgGlnGlnIleLeuAsnValAsnTyrValIlePheA : 182 !:!!|||||||||||||||||| !!||| ! :!!! ! !.! !!||| !!:!! | uMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal---A 5617 : TATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC---G : 5558 183 : spSerAsnAsnTyrPhePheTyrValTyrLeuGlnLeuSerTrpThrSerValValValSer : 202 ||..!:!!!!.||| !!:!! :!! !!!.:!!! ! ..! !|||:!!:!!! ! spGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIle 5557 : ACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATC : 5498 203 : IleIleIleValThrValAspSerLeuLeuMetLeuIleValHisHisAsnSerGlyLeuPh : 223 !:!!.!! !.!! !|||:!! !! !:!!! ! !|||!!.||| !!!!||||||!! SerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLe 5497 : TCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTT : 5435 224 : eValValCysGlyHisGlnIleGln : 231 .!.!:!!...||| ! !:!!||| uAlaIleAlaGly***LeuValGln 5434 : GGCCATTGCAGGGTAATTAGTTCAA : 5409 vulgar: gi|350427266|ref|XP_003494705.1| 140 231 . LHQN01028732.1 5678 5408 - 116 M 40 120 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5409 5678 116 - . gene_id 1 ; sequence gi|350427266|ref|XP_003494705.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5409 5678 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5409 5678 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5409 5678 116 - . alignment_id 1 ; Query gi|350427266|ref|XP_003494705.1| ; Align 5679 141 120 ; Align 5559 182 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425896|ref|XP_003494267.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: LHQN01036086.1 Habropoda laboriosa contig36086, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 89 -> 151 Target range: 6 -> 192 90 : ArgArgThrGluPheLysAspLeuValLeuPheAlaGlnGlnAsnPheTrpHisPheLysTyrA : 111 !.!|||! !|||||| ! ! |||:!! !|||.!!|||:!!!!.||||||||||||!!.|||: HisArgIleGluPheTyrGlyLeuIleArgPheThrGlnGluLysPheTrpHisPheAsnTyrA 7 : CACAGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAGAGAAATTCTGGCATTTCAACTATA : 70 112 : spHisAspGluLysIleLeuPheMetLysCysArgLysLeuCysLysLeuTrpThrIleThrAl : 132 !! ||||||:!!:!!!!. :!!|||!:!|||:!!|||! :!!!::! !:!!.!! snSerArgGluLysLeuIleLeuSerGluCysLysLysIleCysThrValPheIleValAlaPh 71 : ATTCACGGGAGAAGTTAATTTTATCCGAGTGCAAGAAGATATGTACCGTTTTCATCGTTGCCTT : 133 133 : aCysSerPheThrGlnAlaSerLeuAlaPheTyrIleIleThrProIleCysAlaAsn : 151 ! !!! !! !||||||!.!!!!! !||| !|||:!!:!:|||||||||! ...||| eSerPheCysThrGlnGlyThrCysAlaGlyTyrValValThrProIleLeuGlyAsn 134 : CAGCTTCTGTACACAGGGCACGTGTGCTGGTTACGTAGTGACACCTATTTTAggtaat : 192 vulgar: gi|350425896|ref|XP_003494267.1| 89 151 . LHQN01036086.1 6 192 + 148 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01036086.1 exonerate:protein2genome:local gene 7 192 148 + . gene_id 1 ; sequence gi|350425896|ref|XP_003494267.1| ; gene_orientation . LHQN01036086.1 exonerate:protein2genome:local cds 7 192 . + . LHQN01036086.1 exonerate:protein2genome:local exon 7 192 . + . insertions 0 ; deletions 0 LHQN01036086.1 exonerate:protein2genome:local similarity 7 192 148 + . alignment_id 1 ; Query gi|350425896|ref|XP_003494267.1| ; Align 7 90 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: LHQN01040768.1 Habropoda laboriosa contig40768, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 305 -> 350 Target range: 93 -> 228 306 : ArgValIlePheIleCysHisIleLeuAlaCysLeuCysGlnLeuLeuMetPheThrTyrSerC : 327 |||||| !!!. ||| ! :!!.!! !!:!! !!||||||! !|||||||||||||||| ArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerC 94 : CGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTT : 157 328 : ysAspCysIleIleArgGluSerAlaSerIleAlaThrAlaAlaTyrLysGlyProTrpLeuIl : 348 |||||||||||! !! !|||||| !!:!|||||| !:!!!.!||| |||||||||:!!! ysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAs 158 : GCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAA : 220 349 : eLeuPro : 350 !|||||| nLeuPro 221 : TTTACCA : 228 vulgar: gi|350425964|ref|XP_003494289.1| 305 350 . LHQN01040768.1 93 228 + 129 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01040768.1 exonerate:protein2genome:local gene 94 228 129 + . gene_id 1 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation . LHQN01040768.1 exonerate:protein2genome:local cds 94 228 . + . LHQN01040768.1 exonerate:protein2genome:local exon 94 228 . + . insertions 0 ; deletions 0 LHQN01040768.1 exonerate:protein2genome:local similarity 94 228 129 + . alignment_id 1 ; Query gi|350425964|ref|XP_003494289.1| ; Align 94 306 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: LHQN01044749.1 Habropoda laboriosa contig44749, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 133 Query range: 291 -> 350 Target range: 178 -> 1 292 : AspGlyTyrGlnValLeuMetAlaAsnAlaSerThrSerIleArgValIlePheIleCysHisI : 313 ||| !|||.!.! ! !..! !!!. !||| !..! |||||| !!!. ||| !: AspMetTyrAsnGlyThrGlnAsnLysLeuSerPheGluTrpArgValAlaLeuAlaCysPheL 178 : GATATGTATAATGGCACACAGAATAAGTTATCATTTGAATGGCGCGTTGCTTTGGCGTGCTTCT : 115 314 : leLeuAlaCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSe : 334 !::!!.!! !!:!! !!||||||! !||||||||||||||||||||||||:!!! !! !||||| euMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysLeuThrThrGluSe 114 : TGATGACGGGCGTGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCCTAACAACAGAAAG : 52 335 : rAlaSerIleAlaThrAlaAlaTyrLysGlyProTrpLeuIleLeuPro : 350 | !!:!|||||| !:!!!.!||| |||||||||:!!! !|||||| rLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuPro 51 : CCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCA : 2 vulgar: gi|350425964|ref|XP_003494289.1| 291 350 . LHQN01044749.1 178 1 - 133 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01044749.1 exonerate:protein2genome:local gene 2 178 133 - . gene_id 1 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation . LHQN01044749.1 exonerate:protein2genome:local cds 2 178 . - . LHQN01044749.1 exonerate:protein2genome:local exon 2 178 . - . insertions 0 ; deletions 0 LHQN01044749.1 exonerate:protein2genome:local similarity 2 178 133 - . alignment_id 1 ; Query gi|350425964|ref|XP_003494289.1| ; Align 179 292 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425706|ref|XP_003494207.1| PREDICTED: odorant receptor 13a-like, partial [Bombus impatiens] Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 308 -> 353 Target range: 106 -> 241 309 : LeuGlyGluSerThrGlyValGlyGlnAlaAlaTyrGluCysAspTrpTyrAspLeuProProL : 330 :!!||||||!!!||| !|||||| ! !!.!||| ! !!!:|||||| ||| !!! !| IleGlyGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnL 107 : ATCGGAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAA : 170 331 : ysAsnAlaIleSerLeuIleIleValIleCysArgAlaLysValSerPheGlnIleThrAlaGl : 351 ||!.!|||:!!.!!|||:!!!!::!!|||! !|||:!!!..:!! !.!.:!!||||||||||| ysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGl 171 : AAACTGCTCTCGGTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGG : 233 352 : yLysPhe : 353 ||||||| yLysPhe 234 : AAAATTC : 241 vulgar: gi|350425706|ref|XP_003494207.1| 308 353 . LHQN01048470.1 106 241 + 109 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 107 241 109 + . gene_id 1 ; sequence gi|350425706|ref|XP_003494207.1| ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 107 241 . + . LHQN01048470.1 exonerate:protein2genome:local exon 107 241 . + . insertions 0 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 107 241 109 + . alignment_id 1 ; Query gi|350425706|ref|XP_003494207.1| ; Align 107 309 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425958|ref|XP_003494287.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 182 -> 220 Target range: 306 -> 420 183 : IleIleGlnValLeuCysLeuTyrHisValGlyValCysTyrLeuCysPheAspAsnIleLeuC : 204 ::!! |||!.!|||! !:!!|||!!.|||..!|||||||||||||||||||||||||||... LeuThrGlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePheP 307 : ctCACGCAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttt : 370 205 : ysIleMetAsnLeuHisThrAlaGlyGlnPheArgIleLeuGlnTyrArg : 220 |||||| !||||||..!|||||||||||||||||||||||||||||| heIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 371 : tcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: gi|350425958|ref|XP_003494287.1| 182 220 . LHQN01049471.1 306 420 + 143 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 307 420 143 + . gene_id 1 ; sequence gi|350425958|ref|XP_003494287.1| ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 307 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 307 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 307 420 143 + . alignment_id 1 ; Query gi|350425958|ref|XP_003494287.1| ; Align 307 183 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927561|ref|XP_012248310.1| PREDICTED: odorant receptor 4-like isoform X2 [Bombus impatiens] Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 171 -> 219 Target range: 276 -> 420 172 : SerMetSerProTyrTyrGluMetIlePheThrLeuGlnMetIleAsnMetTyrGlnIleAlaV : 193 ...|||! !||| ::: ||| ! !||| :!!::!:!!||||||:!! !| GlnMetIleProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValAsnV 277 : caaATGATTCCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTAACG : 340 194 : alThrTyrPheCysPheAspAsnIlePheCysIleLeuAlaIleHisLeuAlaGlyGlnPheAr : 214 || !|||.!!|||||||||||||||||| |||:::..!:!!|||:!!|||||||||||||| alCysTyrLeuCysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheAr 341 : TGTGTTACCTTTGCTtcgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCG : 403 215 : gIleLeuArgTyrArg : 219 |||||||!:!|||||| gIleLeuGlnTyrArg 404 : TATACTACAATACAGA : 420 vulgar: gi|815927561|ref|XP_012248310.1| 171 219 . LHQN01049471.1 276 420 + 134 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 277 420 134 + . gene_id 1 ; sequence gi|815927561|ref|XP_012248310.1| ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 277 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 277 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 277 420 134 + . alignment_id 1 ; Query gi|815927561|ref|XP_012248310.1| ; Align 277 172 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425429|ref|XP_003494119.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 181 -> 219 Target range: 306 -> 420 182 : LeuIleGlnThrIleSerLeuTyrTyrIleAlaValSerTyrPheCysPheAspAsnValPheC : 203 |||! |||.!!:!!|||:!!||| ! :!! !|||!!!|||.!!||||||||||||:::||| LeuThrGlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePheP 307 : ctCACGCAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttt : 370 204 : ysIleLeuAlaValHisLeuThrGlyGlnPheArgIleLeuArgTyrArg : 219 |||:::..!:!!|||:!!.!!||||||||||||||||||!:!|||||| heIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 371 : tcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: gi|350425429|ref|XP_003494119.1| 181 219 . LHQN01049471.1 306 420 + 125 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 307 420 125 + . gene_id 1 ; sequence gi|350425429|ref|XP_003494119.1| ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 307 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 307 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 307 420 125 + . alignment_id 1 ; Query gi|350425429|ref|XP_003494119.1| ; Align 307 182 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425900|ref|XP_003494268.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 173 -> 218 Target range: 285 -> 420 174 : ProTyrTyrGluLeuIlePhePheAlaGlnIleMetSerLeuSerTyrIleGlyIleCysTyrP : 195 ||| ::: ||| ..!.!!||| !:!:|||:!!! ! ! :!!..!:!:||||||. ProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValAsnValCysTyrL 286 : CCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACC : 349 196 : heCysPheAspAsnValPheCysValMetAlaIleHisLeuGlyGlyGlnPheArgIleLeuAr : 216 !!||||||||||||:::||| :::|||..!:!!|||:!!!.!||||||||||||||||||!: euCysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGl 350 : TTTGCTtcgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACA : 412 217 : gTyrArg : 218 !|||||| nTyrArg 413 : ATACAGA : 420 vulgar: gi|350425900|ref|XP_003494268.1| 173 218 . LHQN01049471.1 285 420 + 128 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 286 420 128 + . gene_id 1 ; sequence gi|350425900|ref|XP_003494268.1| ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 286 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 286 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 286 420 128 + . alignment_id 1 ; Query gi|350425900|ref|XP_003494268.1| ; Align 286 174 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350425964|ref|XP_003494289.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 172 -> 219 Target range: 279 -> 420 173 : ValThrProTyrTyrGluIleIlePheValLeuGlnValLeuSerLeuTyrHisIleGlyIleS : 194 :!!! !||| ::: ||| ::! !|||!.!||||||:!!|||!!.:!!..!:!:! MetIleProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValAsnValC 280 : ATGATTCCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTAACGTGT : 343 195 : erTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaGlyGlnPheArgVa : 215 !!|||.!!||||||||||||...... |||||| !||||||||||||||||||||||||:! ysTyrLeuCysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArgIl 344 : GTTACCTTTGCTtcgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTAT : 406 216 : lLeuGlnTyrArg : 219 !|||||||||||| eLeuGlnTyrArg 407 : ACTACAATACAGA : 420 vulgar: gi|350425964|ref|XP_003494289.1| 172 219 . LHQN01049471.1 279 420 + 132 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 280 420 132 + . gene_id 1 ; sequence gi|350425964|ref|XP_003494289.1| ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 280 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 280 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 280 420 132 + . alignment_id 1 ; Query gi|350425964|ref|XP_003494289.1| ; Align 280 173 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350424935|ref|XP_003493960.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 461 Query range: 189 -> 368 Target range: 1345 -> 245 190 : AspCysLeuPheSerGlyIleLeuIleHisIleTyrCysGlnPheGluIleLeuGluHisAr : 210 ||| !||||||||||||:!:|||||||||||||||||||||||||||||||||:!!||||| AspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisAr 1345 : GACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCG : 1285 211 : gMetLysAsnIleThrThrAspLysAspTyrSerAlaLysPheCysAlaHisHisHisHisA : 231 |:!!|||!:!|||! ! !!|||!:!!!:|||||||||||| |||||| !||||||:!!| gLeuLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrA 1284 : TCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATC : 1222 232 : rgIleTyr{Ly} >>>> Target Intron 1 >>>> {s}PheAlaSerMetValAsn : 240 ||||||||{||} 328 bp {|}||||||..!!!::!!||| rgIleTyr{Ly}++ ++{s}PheAlaGluIleIleAsn 1221 : GCATATAC{AA}gt.........................ag{A}TTCGCTGAAATTATAAAC : 867 241 : AspAsnPheLysMetIleMetSerMetGlnPheLeuIleSerThrGlyAlaValCysPheAs : 261 ! !!.|||!..!!:! |||:!!! !|||||||||:!:!!!||| !.!!:!!|||||||| AlaLysPheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThrMetCysPheAs 866 : GCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACAATGTGCTTCAA : 804 262 : nLeuTyrArgLeuSerValMetGluPheGlyProLysPheMetGluThrAlaThrTyrThrL : 282 ||||!:!||||||!!! !! :!! ! ! !!:!! !!:!:! ! ! ! !!!:!! !: nLeuPheArgLeuThrGlnThrLysValTyrSerGlnValLeuAlaLeuIleProPheMetV 803 : CCTCTTTCGACTGACACAGACCAAGGTGTATTCGCAAGTTTTAGCATTGATACCGTTCATGG : 741 283 : euCysLeuLeuMetGlnValPheTyrTyrCysTrpTyrGlyAsnGluValLysLeuLys > : 302 !! !!:!!!!! |||:!!||||||! !||||||||||||||||||..!|||:!!||| alSerValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys++ 740 : TCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGgt. : 679 303 : >>> Target Intron 2 >>>> SerLeuGluIleProAsnAlaValLeuGluSerAsn : 313 74 bp |||||||||||| !:!!.!!|||!!!||||||||| ++SerLeuGluIleCysAspThrValPheGluSerAsn 678 : ........................agAGCCTTGAAATTTGCGACACAGTATTCGAAAGCAAC : 574 314 : LeuProPheLeuAsnAspSerSerLysLysIleLeuLeuLeuIleMetArgArgSerLeuGl : 334 ! ! !! |||!:!.!.|||!!!||||||! !|||||| !|||||| !|||||||||:! TrpThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLy 573 : TGGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAA : 511 335 : uProIleGluPheThrSerCysHisValIleSerMetAsnLeuGluSerPheAlaIle >> : 354 !|||||||||||||||.!!..! !|||.!! !!:!:||||||||||||||| !! ! sProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSerPheLysSer++ 510 : GCCAATAGAATTCACCGGCGCTTTCGTTTTTCCCGTAAATTTGGAGTCTTTTAAAAGTgt.. : 449 355 : >> Target Intron 3 >>>> LeuLeuLysThrSerTyrSerAlaTyrAsnLeuLeuG : 366 161 bp |||:!!|||||||||||||||!.!!:!|||:!!:!!| ++LeuValLysThrSerTyrSerValPheAsnValIleG 448 : .......................agTTGGTGAAAACTTCCTATTCGGTATTCAACGTAATCC : 254 367 : lnGlnSer : 368 |||||!!! lnGlnThr 253 : AGCAAACG : 246 vulgar: gi|350424935|ref|XP_003493960.1| 189 368 . LHQN01050085.1 1345 245 - 461 M 44 132 S 0 2 5 0 2 I 0 324 3 0 2 S 1 1 M 67 201 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 246 1345 461 - . gene_id 1 ; sequence gi|350424935|ref|XP_003493960.1| ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 1212 1345 . - . LHQN01050085.1 exonerate:protein2genome:local exon 1212 1345 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 1210 1211 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 884 1211 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 884 885 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 682 883 . - . LHQN01050085.1 exonerate:protein2genome:local exon 682 883 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 680 681 . - . intron_id 2 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 608 681 . - . intron_id 2 LHQN01050085.1 exonerate:protein2genome:local splice3 608 609 . - . intron_id 1 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 452 607 . - . LHQN01050085.1 exonerate:protein2genome:local exon 452 607 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 450 451 . - . intron_id 3 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 291 451 . - . intron_id 3 LHQN01050085.1 exonerate:protein2genome:local splice3 291 292 . - . intron_id 2 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 246 290 . - . LHQN01050085.1 exonerate:protein2genome:local exon 246 290 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 246 1345 461 - . alignment_id 1 ; Query gi|350424935|ref|XP_003493960.1| ; Align 1346 190 132 ; Align 883 235 201 ; Align 608 302 156 ; Align 291 354 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350406010|ref|XP_003487626.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 182 -> 291 Target range: 1306928 -> 1306598 183 : IleTyrArgPheAlaGluMetValAsnAsnLeuPheSerLysMetMetCysValGl : 201 :!!|||!!! ! !.!.!. |||||||||||||||::: !!::!:! !||||| LeuTyrSerValValAsnAspValAsnAsnLeuPheThrProIleValPheValGl 1306928 : TTATACAGCGTGGTGAATGatgtgaataatttatttactccCATCGTTTTCGTACA : 1306874 202 : nPheMetValSerAlaAlaAlaIleCysPheAsnValTyrArgValThrGluSerA : 220 |.!!:!:..!|||!.! !!.!||||||!!.!:!! !!:! !||| !!!:!:!: nLeuLeuThrSerGlyIleValIleCysLeuSerGlyPheAlaValPheAspAsnA 1306873 : ACTTCTTACAAGCGGAATAGTAATTTGTTTAAGTGGATTCGCGGTTTTCGATAACG : 1306817 221 : snAlaGlySerGlnLeuIleGlySerValLeuPheIlePheSerAlaLeuLeuGln : 238 !!||| !!!!!.!.:!!:!: !! !|||! !!:!:!:! !||| !! !|||||| spAlaArgThrAspIleLeuLysTyrValSerTyrLeuSerSerIleTrpLeuGln 1306816 : ACGCCCGTACCGATATTCTGAAATACGTATCTTATTTGTCCTCGATTTGGTTGCAA : 1306763 239 : ThrPheTyrPheCysTrpPheGlyAspValAlaLysLeuLysSerLeuAspIlePr : 257 !!!.! !::|||! ! !|||!!::!! ! ! !:!!||||||!!:||| LeuLeuLeuTrpCysLeuProGlyGluIleLeuValGlnGluSerLeuGluIleGl 1306762 : CTTTTGTTATGGTGTTTGCCCGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGG : 1306706 258 : oAsnMetIleTyr<->HisSerAspTrpThrAsnLeuSerAsnAspAlaLysLysM : 275 !:!!:!::!!||| :!! ! ||| !|||||| !! ! !:!!!:!! yHisValValTyrLeuAsnValProTrpTyrAsnLeuProProIleTyrGlnArgL 1306705 : ACACGTAGTCTACTTAAATGTACCATGGTACAATTTGCCGCCAATTTACCAGAGAA : 1306649 276 : etLeuMetValIleMetAlaArgSerLeuThrProValGluIleThrSer : 291 ||| :!!!!:!!: !|||:!!! ! ! ! !...||||||:!! ysLeuCysMetMetIleLeuArgAlaGlnGlnTyrCysSerIleThrAla 1306648 : AACTTTGCATGATGATCCTTAGGGCACAACAATATTGCAGCATCACGGCA : 1306599 vulgar: gi|350406010|ref|XP_003487626.1| 182 291 . KQ414608.1 1306928 1306598 - 121 M 79 237 G 0 3 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1306599 1306928 121 - . gene_id 1 ; sequence gi|350406010|ref|XP_003487626.1| ; gene_orientation . KQ414608.1 exonerate:protein2genome:local cds 1306599 1306928 . - . KQ414608.1 exonerate:protein2genome:local exon 1306599 1306928 . - . insertions 3 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1306599 1306928 121 - . alignment_id 1 ; Query gi|350406010|ref|XP_003487626.1| ; Align 1306929 183 237 ; Align 1306689 262 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 325 -> 400 Target range: 204727 -> 204952 326 : PheAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGlnCysSerGlnI : 345 ||| :::::! !!!. ...... |||:!! !:!!! !..!:!!: PheProLeuTyrTyrLeuSerSerPheSerIleSerLeuSerIleLysSerGluGluV 204728 : tttcctctatACTACTTgtcttcattttcaatttctttgtCGATAAAGTCCGAAGAAG : 204785 346 : leGlyIleThrSerTyrGluIleGluTrpTyrGlnLeuProAlaLysLysAlaTyrAs : 364 !! !:!!.!!:!!|||||| !||||||! .!.||| !:!!!!.|||||| ! .. alTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsnLysAlaLysSe 204786 : TATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAACAAGGCGAAAAG : 204842 365 : pLeuIleLeuLeuIleSerIleSerHisTyrProProLysLeuThrAlaGlyLysIle : 383 !|||||||||:!!!!::!!! :!!!!. |||! ! |||||||||||||||::: rLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuThrAlaGlyLysLeu 204843 : TTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGcaggaaaatta : 204899 384 : IleGluLeuSerLeuAsnThrPheSerSerValAlaLysSerSerValIle : 400 ... ::!!!!:!! ||||||!!!!:!|||.!!:!! !! !:!!:!! PheProMetThrMetLeuThrPheCysAsnValThrGlnLeuTyrIleLeu 204900 : tttcctatGACGATGCTAACGTTTTGCAACGTCACTCAGCTATATATCCTT : 204952 vulgar: gi|350412763|ref|XP_003489754.1| 325 400 . KQ414617.1 204727 204952 + 102 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204728 204952 102 + . gene_id 1 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204728 204952 . + . KQ414617.1 exonerate:protein2genome:local exon 204728 204952 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204728 204952 102 + . alignment_id 1 ; Query gi|350412763|ref|XP_003489754.1| ; Align 204728 326 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350406010|ref|XP_003487626.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 648 Query range: 0 -> 322 Target range: 3163999 -> 3165548 1 : MetAspIlePheTyrAsnValGluThrGlnAspAspLeuSerGluAsnPheSerVa : 19 :!:|||:!! !|||||||||!:!|||||||||!!!|||:::|||||||||:: LeuAspValAlaIleAsnValGluSerGlnAspAspPheSerAspAsnPheSerIl 3164000 : TTAGACGTAGCGATCAACGTGGAGAGCCAGGATGACTTCagtgacaatttttctat : 3164054 20 : lThrValThrValLeuIleThrSerCysLysPheValSerLeuValLeuGlyArgL : 38 :|||!.!..!|||!!!:!!|||!!!! !|||.!! !! !|||:!!:!! !!||| eThrAlaValValPheLeuThrTrpPheLysLeuSerIleLeuLeuIleArgArgG 3164055 : caccGCTGTGGTGTTTCTCACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTG : 3164111 39 : ysThrIleIleAsnIleLeuGlyLeuLeuLysLysLysProPheValProGluAsn : 56 !!.!.!!||| !:!::!!! ! !|||:!!!!.||||||||| !|||! !:!! lyAsnPheIlePheLeuIleAspThrLeuGlnAsnLysProPheSerProValAsp 3164112 : GAAACTTTATATTTCTGATCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGAC : 3164165 57 : AsnGluGluAlaGluIleTyrAlaLysTyrAspAsnLeuIle{Gl} >>>> Tar : 71 !..|||||| !|||||| ||||||!:!!!:!!.:!!! !{||} ThrGluGluAsnGluIleArgAlaLysPheGluLysIleThr{Gl}++ 3164166 : ACGGAAGAGAACGAGATTAGAGCGAAATTCGAGAAGATCACC{GA}gt........ : 3164214 72 : get Intron 1 >>>> {u}LysIleAlaMetPheTyrThrIleGlnAsnAlaP : 83 107 bp {|} !! !.!!!!: !||| !! ! ! !. ++{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuI 3164215 : .................ag{A}TGGAACACGATTGGCTACTGGAGTTTACTATTAA : 3164353 84 : heCysValLeuSerLeuIleValAlaThrLeuMetThrAspPheLysLeuLysLys : 101 !!|||!.!!!!!!!:!! !||| !:!!|||:!!|||||||||!.. !!:!||| leCysAlaPheTrpIleTyrValArgSerLeuLeuThrAspPheSerSerArgLys 3164354 : TTTGTGCGTTCTGGATATACGTGAGATCGCTTTTGACAGATTTTAGTAGTAGAAAA : 3164407 102 : LeuAlaPheArgAlaTrpLeuProPheAspPheThrSerSerTrpPheThrPheSe : 120 ||| !||||||||||||||||||!:!|||!:!:!! !!:!! .!! |||! LeuMetPheArgAlaTrpLeuProTyrAspTyrSerProAlaProIle---PheIl 3164408 : CTGATGTTTCGAGCATGGTTACCCTACGATTACTCCCCTGCGCCCATT---TTTAT : 3164461 121 : rMetThrPheIleTyrGlnPheValGlySerMetValIleSerAlaGlyIleSerI : 139 !:!:||||||:!!:!!||| !:!!!.!:!!! !:!! !!!!.!!..!! ! !! eLeuThrPheValHisGlnAlaIleAlaAlaThrIleCysCysThrSerSerValT 3164462 : CCTTACCTTCGTCCATCAAGCTATAGCCGCGACGATATGTTGCACTTCGAGCGTCA : 3164518 140 : lePheAspThrLeuPheAlaGlyLeuLeuLeuGlnIleCysCysGlnPheGluIle : 157 ! ! |||:!!|||!:!.!!|||||||||:!!.!.|||! !||||||||||||||| hrValAspSerLeuTyrThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIle 3164519 : CTGTGGATTCTCTATACACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATA : 3164572 158 : LeuValAsnArgLeuHisAsnIleGlyGlyAspGluIleLeuSerLeuLysHisCy : 176 |||! !:!!||||||...|||:!! ! !!!::!! ! !|||:!!|||!!.|| LeuGluHisArgLeuArgAsnValLysThrGluGlnAspAspSerValLysGlnCy 3164573 : CTAGAACATCGTCTAAGGAACGTTAAAACTGAGCAGGATGACTCTGTGAAGCAATG : 3164629 177 : sValArgHisHisAsnAlaIleTyr{Ar} >>>> Target Intron 2 >>>> : 185 |!.!!:!||||||:!! !||||||{!:} 325 bp sAlaGlnHisHisAspArgIleTyr{Gl}++ 3164630 : TGCTCAACATCACGATCGTATATAC{CA}gt......................... : 3164660 186 : {g}PheAlaGluMetValAsnAsnLeuPheSerLysMetMetCysValGlnPhe : 202 {!}|||:!!:!!! !||||||.!. !|||!.! !!!::!! ! !|||||| ++{n}PheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPhe 3164661 : ag{A}TTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTC : 3165032 203 : MetValSerAlaAlaAlaIleCysPheAsnValTyrArgValThrGluSerAsnAl : 221 :!!||| !:!!!.!||||||||||||:!!||||||:!!|||:!!! !!!. CysIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMe 3165033 : TGCATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAAT : 3165089 222 : aGlySerGlnLeuIleGlySerValLeuPheIlePheSerAlaLeuLeuGlnThrP : 240 !! ::::::...::: :!!|||!:! !|||!!!.!!:!! !|||! !| tAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIleP 3165090 : GGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATAT : 3165146 241 : heTyrPheCysTrpPheGlyAspValAlaLysLeuLys >>>> Target Intr : 253 |||||!:!||||||!:!|||:!!! !!.!|||! !||| 80 bp heTyrTyrCysTrpTyrGlyAsnGluValLysHisLys++ 3165147 : TTTACTATTGCTGGTACGGCAACGAAGTGAAACATAAGgt................ : 3165187 254 : on 3 >>>> SerLeuAspIleProAsnMetIleTyrHisSerAspTrpThrAsn : 267 ||||||.!.:!!||| !!||||||!:!|||||||||||||||::! ++SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSer 3165188 : .........agAGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTCT : 3165307 268 : LeuSerAsnAspAlaLysLysMetLeuMetValIleMetAlaArgSerLeuThrPr : 286 |||!:!|||:!!!.!! !:! |||:!::!!!!:||| !|||:!!:!!! !|| LeuAsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgPr 3165308 : TTGAACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCC : 3165364 287 : oValGluIleThrSerAlaTyrIleLeuProMetAsnLeuGluSerPheLysGly : 305 |:!!|||.!!|||||| !:!!:!!:!! !!:!!|||||||||||||||! !!.! oIleGluPheThrSerIleHisValValSerValAsnLeuGluSerPheMetAla+ 3165365 : AATAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAg : 3165421 306 : >>>> Target Intron 4 >>>> LeuIleLysThrThrTyrSerThrTyrA : 314 74 bp :!!|||||||||:!!||||||.!!!:!| + ++ValIleLysThrSerTyrSerAlaPheA 3165422 : t.........................agGTAATAAAAACTTCGTACTCCGCGTTCA : 3165522 315 : snMetLeuLeuGlnSerLysSerSer : 322 |||||:!!! !|||||||||..!||| snMetIleGlnGlnSerLysGlnSer 3165523 : ACATGATCCAACAAAGCAAACAATCG : 3165548 vulgar: gi|350406010|ref|XP_003487626.1| 0 322 . KQ414646.1 3163999 3165548 + 648 M 70 210 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 46 138 G 1 0 M 66 198 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 67 201 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164000 3165548 648 + . gene_id 1 ; sequence gi|350406010|ref|XP_003487626.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3164000 3164211 . + . KQ414646.1 exonerate:protein2genome:local exon 3164000 3164211 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164212 3164213 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164212 3164318 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3164317 3164318 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164319 3164657 . + . KQ414646.1 exonerate:protein2genome:local exon 3164319 3164657 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3164658 3164659 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164658 3164982 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3164981 3164982 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164983 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164983 3165184 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165185 3165186 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165185 3165264 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3165263 3165264 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165265 3165420 . + . KQ414646.1 exonerate:protein2genome:local exon 3165265 3165420 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165421 3165422 . + . intron_id 4 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165421 3165494 . + . intron_id 4 KQ414646.1 exonerate:protein2genome:local splice3 3165493 3165494 . + . intron_id 3 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165495 3165548 . + . KQ414646.1 exonerate:protein2genome:local exon 3165495 3165548 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164000 3165548 648 + . alignment_id 1 ; Query gi|350406010|ref|XP_003487626.1| ; Align 3164000 1 210 ; Align 3164320 72 138 ; Align 3164458 119 198 ; Align 3164984 186 201 ; Align 3165265 253 156 ; Align 3165495 305 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350406010|ref|XP_003487626.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 594 Query range: 0 -> 302 Target range: 3157471 -> 3158886 1 : MetAspIlePheTyrAsnValGluThrGlnAspAspLeuSerGluAsnPheSerVa : 19 :!:|||:!! !|||||||||!:!|||||||||!!!|||:::||||||||||| LeuAspValAlaIleAsnValGluSerGlnAspAspPheSerAspAsnPheSerVa 3157472 : TTAGACGTAGCGATCAACGTGGAGAGCCAGGATGACTTCAgtgacaatttttctgt : 3157526 20 : lThrValThrValLeuIleThrSerCysLysPheValSerLeuValLeuGlyArgL : 38 ||||!.!..!|||!!!:!!|||!!!! !|||.!! !! !|||:!!:!! !!||| lThrAlaValValPheLeuThrTrpPheLysLeuSerIleLeuLeuIleArgArgG 3157527 : caCCGCTGTGGTGTTTCTCACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTG : 3157583 39 : ysThrIleIleAsnIleLeuGlyLeuLeuLysLysLysProPheValProGluAsn : 56 !!.!.!!||| !:!::!!! ! !|||:!!!!.||||||||| !|||! !:!! lyAsnPheIlePheLeuIleAspThrLeuGlnAsnLysProPheSerProValAsp 3157584 : GAAACTTTATATTTCTGATCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGAC : 3157637 57 : AsnGluGluAlaGluIleTyrAlaLysTyrAspAsnLeuIle{Gl} >>>> Tar : 71 !..|||||| !|||||| ||||||!:!!!:!!.:!!! !{||} ThrGluGluAsnGluIleArgAlaLysPheGluLysIleThr{Gl}++ 3157638 : ACGGAAGAGAACGAGATTAGAGCGAAATTCGAGAAGATCACC{GA}gt........ : 3157686 72 : get Intron 1 >>>> {u}LysIleAlaMetPheTyrThrIleGlnAsnAlaP : 83 107 bp {|} !! !.!!!!: !||| !! . ++{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuI 3157687 : .................ag{A}TGGAACACGATTGGCTACTGGAGtttactattaa : 3157825 84 : heCysValLeuSerLeuIleValAlaThrLeuMetThrAspPheLysLeuLysLys : 101 .. ..!!!!! !:!! !||| !:!!|||:!!! !||||||!.. !!:!||| leSerThrPhePheIleTyrValArgSerLeuLeuIleAspPheSerAsnArgLys 3157826 : tttctacGTTCTTTATATACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAA : 3157879 102 : LeuAlaPheArgAlaTrpLeuProPheAspPheThrSerSerTrpPheThrPheSe : 120 ||| !||||||||||||:!!|||!:!|||!:!:!! !!:!! .!! |||! LeuMetPheArgAlaTrpIleProTyrAspTyrSerProAlaProIle---PheIl 3157880 : CTGATGTTTCGAGCATGGATACCCTACGATTACTCCCCTGCGCCCATT---TTTAT : 3157933 121 : rMetThrPheIleTyrGlnPheValGlySerMetValIleSerAlaGlyIleSerI : 139 !:!:|||! !:!!:!!||| !:!!!.!|||! !:!! !!!!.!!..!! ! !! eLeuThrSerValHisGlnAlaIleAlaSerThrIleCysCysThrSerThrValT 3157934 : CCTTACCTCCGTCCATCAAGCTATAGCCTCGACGATATGTTGCACTTCGACCGTCA : 3157990 140 : lePheAspThrLeuPheAlaGlyLeuLeuLeuGlnIleCysCysGlnPheGluIle : 157 ! ! |||||||||!:!.!!|||||||||:!!.!.|||! !||||||||||||||| hrValAspThrLeuTyrThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIle 3157991 : CTGTGGATACTCTATACACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATA : 3158044 158 : LeuValAsnArgLeuHisAsnIleGlyGlyAspGluIleLeuSerLeuLysHisCy : 176 |||! !:!!||||||...|||:!! ! !!!::!! ! !|||:!!|||!!.|| LeuGluHisArgLeuArgAsnValLysThrGluGlnAspAspSerValLysGlnCy 3158045 : CTAGAACATCGTCTAAGGAACGTTAAAACTGAGCAGGATGACTCTGTGAAGCAATG : 3158101 177 : sValArgHisHisAsnAlaIleTyr{Ar} >>>> Target Intron 2 >>>> : 185 |!.!!:!||||||:!! !||||||{!:} 325 bp sAlaGlnHisHisAspArgIleTyr{Gl}++ 3158102 : TGCTCAACATCACGATCGTATATAC{CA}gt......................... : 3158132 186 : {g}PheAlaGluMetValAsnAsnLeuPheSerLysMetMetCysValGlnPhe : 202 {!}|||:!!:!!! !||||||.!. !|||!.! !!!::!! ! !|||||| ++{n}PheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPhe 3158133 : ag{A}TTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTC : 3158504 203 : MetValSerAlaAlaAlaIleCysPheAsnValTyrArgValThrGluSerAsnAl : 221 :!!||| !:!!!.!||||||||||||:!!||||||:!!|||:!!! !!!. CysIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMe 3158505 : TGCATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAAT : 3158561 222 : aGlySerGlnLeuIleGlySerValLeuPheIlePheSerAlaLeuLeuGlnThrP : 240 !! ::::::...::: :!!|||!:! !|||!!!.!!:!! !|||! !| tAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIleP 3158562 : GGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATAT : 3158618 241 : heTyrPheCysTrpPheGlyAspValAlaLysLeuLys >>>> Target Intr : 253 |||||!:!||||||!:!|||:!!! !!.!||| !||| 80 bp heTyrTyrCysTrpTyrGlyAsnGluValLysAspLys++ 3158619 : TTTACTATTGTTGGTACGGCAACGAAGTGAAAGATAAGgt................ : 3158659 254 : on 3 >>>> SerLeuAspIleProAsnMetIleTyrHisSerAspTrpThrAsn : 267 ||||||.!.:!!||| !!||||||!:!|||||||||||||||::! ++SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSer 3158660 : .........agAGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTCT : 3158779 268 : LeuSerAsnAspAlaLysLysMetLeuMetValIleMetAlaArgSerLeuThrPr : 286 |||!:!|||:!!!.!! !:! |||:!::!!!!:||| !|||:!!:!!! !|| LeuAsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgPr 3158780 : TTGAACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCC : 3158836 287 : oValGluIleThrSerAlaTyrIleLeuProMetAsnLeuGluSerPhe : 302 |:!!|||.!!|||||| !:!!:!!:!! !!:!!||||||||||||||| oIleGluPheThrSerIleHisValValSerValAsnLeuGluSerPhe 3158837 : AATAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTC : 3158886 vulgar: gi|350406010|ref|XP_003487626.1| 0 302 . KQ414646.1 3157471 3158886 + 594 M 70 210 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 46 138 G 1 0 M 66 198 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 67 201 5 0 2 I 0 76 3 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157472 3158886 594 + . gene_id 2 ; sequence gi|350406010|ref|XP_003487626.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3157472 3157683 . + . KQ414646.1 exonerate:protein2genome:local exon 3157472 3157683 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3157684 3157685 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3157684 3157790 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3157789 3157790 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3157791 3158129 . + . KQ414646.1 exonerate:protein2genome:local exon 3157791 3158129 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3158130 3158131 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158130 3158454 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3158453 3158454 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158455 3158656 . + . KQ414646.1 exonerate:protein2genome:local exon 3158455 3158656 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158657 3158658 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158657 3158736 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3158735 3158736 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158737 3158886 . + . KQ414646.1 exonerate:protein2genome:local exon 3158737 3158886 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157472 3158886 594 + . alignment_id 2 ; Query gi|350406010|ref|XP_003487626.1| ; Align 3157472 1 210 ; Align 3157792 72 138 ; Align 3157930 119 198 ; Align 3158456 186 201 ; Align 3158737 253 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350406010|ref|XP_003487626.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 259 Query range: 73 -> 302 Target range: 3153120 -> 3153860 74 : AlaMetPheTyrThrIleGlnAsnAlaPheCysValLeuSerLeuIleValAlaTh : 92 |||! ! !|||||| ! ! !.!!! |||:!! !||| :!!.!!:! AlaLysAlaTyrThrTyrPheLeuAspIleLeuValValValLeuTrpIleThrSe 3153121 : GCTAAGGCTTACACATATTTCCTGGACATCTTGGTAGTCGTTTTATGGATAACATC : 3153175 93 : rLeuMetThrAspPheLysLeuLysLysLeuAlaPheArgAlaTrpLeuProPheA : 111 !! !.!.||||||!:!!:! :::|||... ||||||..!|||||||||!:!| rTyrPheThrAspTyrArgArgArgLysPheLysPheArgValTrpLeuProTyrA 3153176 : GTACTTCACGGACTACAGGcgcagaaaattcaaatttcgcgtCTGGTTACCTTACG : 3153232 112 : spPheThrSerSerTrpPheThrPheSerMetThrPheIleTyrGlnPheValGly : 129 || |||!!!!!! !..!|||!!!:!!! !!:! ! ! |||.!!||| !! sp---ThrThrThrGlnProValPheThrLeuIleTyrCysGlnGlnIleValCys 3153233 : AC---ACTACTACACAACCTGTCTTCACTCTGATCTACTGTCAACAGATCGTCTGC : 3153283 130 : SerMetValIleSerAlaGlyIleSerIlePheAspThrLeuPheAlaGlyLeuLe : 148 !!! ! !! ! ! ! !! ! !|||! !||| !||||||::!||||||:! ThrTrpTyrSerValAsnIleAsnValIleCysAspCysLeuPheSerGlyLeuMe 3153284 : ACGTGGTACAGCGTGAATATTAACGTCATTTGCGACTGCCTGTTCAGCGGCCTGAT : 3153340 149 : uLeuGlnIleCysCysGlnPheGluIleLeuValAsnArgLeuHisAsnIleGlyG : 167 !:!!|||||||||! !!...!! :!! ! !! !! !!..||| !! ! tIleGlnIleCysSerIleLeuArgLysMetLysProThrArgArgAsnCysValL 3153341 : GATACAGATTTGCTCAATCTTACGGAAGATGAAACCTACTCGGCGAAACTGTGTGC : 3153397 168 : lyAspGluIleLeuSerLeuLysHisCysValArgHisHisAsnAlaIleTyrArg : 185 !! ! |||:!!!!!! !! ! ! !|||...... ||| ! euValThrIleIleArgTyrThrSerGlnSerArgGlnGluIleLysArgTyrVal 3153398 : TCGTCACCATAATCAGATATACAAGCCAGTCTCGacaagaaattaaacgatacgTT : 3153451 186 : <->PheAlaGluMetValAsnAsnLeuPheSerLysMetMetCysValGlnPheMe : 203 !!.|||:!!!!:||||||.!. !.!!.!!!!.:!: ! !!:!!|||||| ***LeuAlaGlnIleValAsnGluLysLeuGlyAsnValSerSerIleGlnPheAl 3153452 : TGATTGGCGCAAATAGTGAACGAGAAGCTTGGAAATGTCTCGAGTATACAGTTCGC : 3153508 204 : tValSerAlaAlaAlaIleCysPheAsnValTyrArgValThrGluSerAsnAlaG : 222 !:!!|||.!!!.!|||||||||||||||:!!||||||:!!:!!! !! !.!. !| aIleSerThrGlyAlaIleCysPheAsnLeuTyrArgMetSerValIleGluLeuG 3153509 : GATAAGCACAGGAGCGATATGCTTCAATCTCTATCGAATGTCGGTGATAGAACTCG : 3153565 223 : lySerGlnLeuIleGlySerValLeuPheIlePheSerAlaLeuLeuGlnThrPhe : 240 || !!:!!!!!:!:! !:!!:!! !.!!! ! ! !!! !||| !|||! !||| lyProLysPheValGluAlaLeuThrIleThrValCysLeuLeuAlaGlnIlePhe 3153566 : GTCCAAAGTTTGTGGAAGCGTTAACTATCACAGTATGCTTACTCGCGCAGATATTT : 3153619 241 : TyrPheCysTrpPheGlyAspValAlaLysLeuLys >>>> Target Intron : 253 |||!:!||||||!::|||::: ... ! 53 bp TyrTyrCysTrpTyrGlyAsnAspArgAsnTyrAsp-- 3153620 : TACTATTGTTGGTAcggtaacgatagaaattacgATag.................. : 3153660 254 : 1 >>>> SerLeuAspIleProAsnMetIleTyrHisSerAspTrpThrAsnLe : 268 ||||||!!:||| !:!!! :!! :!!|||:!! ||| ! ++SerLeuGluIleValAspArgValThrAsnSerAsnIleThrValSe 3153661 : .......agAGTCTCGAAATTGTGGACAGAGTAACGAACAGTAATATAACCGTGTC : 3153756 269 : uSerAsnAspAlaLysLysMetLeuMetValIleMetAlaArgSerLeuThrProV : 287 !..!.!...!:!!||||||!!:|||:!::!!!!:!!: !|||:!!||| !|||| rAspGluSerSerLysLysIleLeuValLeuMetIleArgArgAlaLeuGluProV 3153757 : GGACGAAAGCTCCAAGAAGATTCTGGTATTGATGATACGACGAGCTTTGGAGCCTG : 3153813 288 : alGluIleThrSerAlaTyrIleLeuProMetAsnLeuGluSerPhe : 302 |||||.!!|||.!! ! !|||:!! !!:!:||||||||||||||| alGluPheThrGlyLeuArgIleMetSerValAsnLeuGluSerPhe 3153814 : TCGAGTTCACCGGCCTTCGTATCATGTCTGTTAATCTCGAGTCATTC : 3153860 vulgar: gi|350406010|ref|XP_003487626.1| 73 302 . KQ414646.1 3153120 3153860 + 259 M 38 114 G 1 0 M 73 219 G 0 3 M 67 201 5 0 2 I 0 49 3 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153121 3153860 259 + . gene_id 3 ; sequence gi|350406010|ref|XP_003487626.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3153121 3153657 . + . KQ414646.1 exonerate:protein2genome:local exon 3153121 3153657 . + . insertions 3 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3153658 3153659 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local intron 3153658 3153710 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3153709 3153710 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3153711 3153860 . + . KQ414646.1 exonerate:protein2genome:local exon 3153711 3153860 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153121 3153860 259 + . alignment_id 3 ; Query gi|350406010|ref|XP_003487626.1| ; Align 3153121 74 114 ; Align 3153235 113 219 ; Align 3153457 186 201 ; Align 3153711 253 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350406010|ref|XP_003487626.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 243 Query range: 70 -> 186 Target range: 3160053 -> 3160401 71 : GluLysIleAlaMetPheTyrThrIleGlnAsnAlaPheCysValLeuSerLeuIl : 89 ..!|||:!!:!!||| !||||||:!! !..!.!.!. !!!.! !.!!:!! ArgLysLeuSerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValTr 3160054 : AGAAAGCTCTCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTATG : 3160108 90 : eValAlaThrLeuMetThrAspPheLysLeuLysLysLeuAlaPheArgAlaTrpL : 108 :!! !:!! !||||||! |||!:!:!!!:!:!!||| !!.!!|||!.!|||| pMetLeuSerAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrpL 3160109 : GATGTTGTCGGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGGT : 3160165 109 : euProPheAspPheThrSerSerTrpPheThrPheSerMetThrPheIleTyrGln : 126 |||||||||||!:!! !:!!!!!! ! !! !||||||:!:|||!:! !|||||| euProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGln 3160166 : TACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAG : 3160219 127 : PheValGlySerMetValIleSerAlaGlyIleSerIlePheAspThrLeuPheAl : 145 |||||| ! !!!: !!|||!!!.!!!.!|||! ! ! !|||!.!||||||:: PheValThrLeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheSe 3160220 : TTTGTAACTCTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCAG : 3160276 146 : aGlyLeuLeuLeuGlnIleCysCysGlnPheGluIleLeuValAsnArgLeuHisA : 164 !|||||||||:!!!!.|||! !|||||||||||||||||| !:!!|||||| ! ! rGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysS 3160277 : CGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGA : 3160333 165 : snIleGlyGlyAspGluIleLeuSerLeuLysHisCysValArgHisHisAsnAla : 182 :!||| ! !|||..! ! !||| !|||!!.|||!.! !|||||| !! ! erIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrArg 3160334 : GCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGC : 3160387 183 : IleTyrArgPhe : 186 ||||||!:!||| IleTyrLysPhe 3160388 : ATATACAAGTTT : 3160401 vulgar: gi|350406010|ref|XP_003487626.1| 70 186 . KQ414646.1 3160053 3160401 + 243 M 116 348 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160054 3160401 243 + . gene_id 4 ; sequence gi|350406010|ref|XP_003487626.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160054 3160401 . + . KQ414646.1 exonerate:protein2genome:local exon 3160054 3160401 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160054 3160401 243 + . alignment_id 4 ; Query gi|350406010|ref|XP_003487626.1| ; Align 3160054 71 348 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350406010|ref|XP_003487626.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 203 Query range: 68 -> 185 Target range: 3180041 -> 3180389 69 : LeuIleGluLysIleAlaMetPheTyrThrIleGlnAsnAlaPheCysValLeuSe : 87 ||| !..!|||! !|||:!: ||||||!!: ! !! !.!.! ||| !|| LeuAspArgLysAsnAlaValArgTyrThrMetValValGluMetSerValAlaSe 3180042 : CTCGACAGGAAAAACGCTGTCAGATACACAATGGTAGTCGAGATGTCGGTCGCCTC : 3180096 88 : rLeuIleValAlaThrLeuMetThrAspPheLysLeuLysLysLeuAlaPheArgA : 106 | !|||:!! !:!!|||:!!|||:!!|||:!!! ! !:!|||.!!!:!|||! rThrIleLeuAsnSerLeuValThrAsnPheGlnHisGlyArgLeuThrTyrArgG 3180097 : GACTATTTTAAACTCGTTAGTGACCAACTTTCAACACGGCAGACTAACCTACAGAG : 3180153 107 : laTrpLeuProPheAspPheThrSerSerTrpPheThrPheSerMetThrPheIle : 124 .!|||!!!|||!:!|||!:!|||!!!:!! ! !||| !!:!!|||!:! ! lyTrpPheProTyrAspTyrThrThrAla---ValLeuPheProLeuThrTyrAla 3180154 : GCTGGTTCCCTTACGATTACACGACCGCC---GTACTTTTTCCATTGACATACGCT : 3180204 125 : TyrGlnPheValGlySerMetValIleSerAlaGlyIleSerIlePheAspThrLe : 143 |||.!.:!! !! !:!:||| !||| ! ! ! ! ! ! |||! !|| LeuGlnLeuLeuCysValLeuValTyrSerTrpIleHisValSerValAspIleLe 3180205 : CTGCAGCTATTATGCGTGCTCGTATATTCCTGGATCCACGTTTCAGTGGATATTCT : 3180261 144 : uPheAlaGlyLeuLeuLeuGlnIleCysCysGlnPheGluIleLeuValAsnArgL : 162 |||| !|||||||||:!!|||:!:||||||||||||!!:|||||| :::|||. uPhePheGlyLeuLeuMetGlnLeuCysCysGlnPheAspIleLeuPheSerArgP 3180262 : CTTCTTCGGACTGTTGATGCAACTGTGCTGTCAATTCGAcattctcttctctcgtt : 3180318 163 : euHisAsnIleGlyGlyAspGluIleLeuSerLeuLysHisCysValArgHisHis : 180 .. !!:!||| !..!!!:.!.! ! !|||::!...|||:!!||||||||| heSerSerIleThrSerGluAsnLysGlyValLeuArgArgCysIleArgHisHis 3180319 : tcAGTAGCATAACGTCGGAGAACAAGGGTGTTTTACGAAGATGCATTCGTCATCAC : 3180372 181 : AsnAlaIleTyrArg : 185 :!! !||||||||| AspArgIleTyrArg 3180373 : GACAGAATTTACCGG : 3180389 vulgar: gi|350406010|ref|XP_003487626.1| 68 185 . KQ414646.1 3180041 3180389 + 203 M 47 141 G 1 0 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180042 3180389 203 + . gene_id 5 ; sequence gi|350406010|ref|XP_003487626.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180042 3180389 . + . KQ414646.1 exonerate:protein2genome:local exon 3180042 3180389 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3180042 3180389 203 + . alignment_id 5 ; Query gi|350406010|ref|XP_003487626.1| ; Align 3180042 69 141 ; Align 3180183 117 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350406010|ref|XP_003487626.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 196 Query range: 90 -> 186 Target range: 3174323 -> 3174612 91 : AlaThrLeuMetThrAspPheLysLeuLysLysLeuAlaPheArgAlaTrpLeu-P : 109 :!!:!!:!!.!.|||! !||||||:!!!:!:!!||| !!.!!|||!.!||||||#| SerSerIlePheThrAlaPheLysIleArgGluLeuProLeuArgGlyTrpLeu#P 3174324 : TCGTCGATCTTCACGGCTTTTAAGATCAGAGAGTTACCCCTTCGAGGATGGTTAAC : 3174379 110 : roPheAspPheThrSerSerTrpPheThrPheSerMetThrPheIleTyrGlnPhe : 127 ||||||||!:!! !:!!!!!! ! !! !||||||:!:|||!:! !||||||||| roPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGlnPhe 3174380 : CTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAGTTT : 3174433 128 : ValGlySerMetValIleSerAlaGlyIleSerIlePheAspThrLeuPheAlaGl : 146 ||| ! !!!: !!:!!!!!:!!!.!|||! ! !! !|||!.!||||||::!|| ValThrLeuIlePheLeuThrSerAlaIleIleGlySerAspAsnLeuPheSerGl 3174434 : GTAACTCTGATATTCCTTACTTCTGCTATTATCGGTTCTGACAATCTATTCAGCGG : 3174490 147 : yLeuLeuLeuGlnIleCysCysGlnPheGluIleLeuValAsnArgLeuHisAsnI : 165 |||||||:!!!!.|||! !|||||||||||||||||| !:!!|||||| ! !:!| yLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysSerI 3174491 : ACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGAGCA : 3174547 166 : leGlyGlyAspGluIleLeuSerLeuLysHisCysValArgHisHisAsnAlaIle : 183 || ! !|||..! ! !||| !|||!!.|||!.! !|||||| !! !||| leLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrArgIle 3174548 : TTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGCATA : 3174601 184 : TyrArgPhe : 186 |||!:!||| TyrLysPhe 3174602 : TACAAGTTT : 3174612 vulgar: gi|350406010|ref|XP_003487626.1| 90 186 . KQ414646.1 3174323 3174612 + 196 M 18 54 F 0 1 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174324 3174612 196 + . gene_id 6 ; sequence gi|350406010|ref|XP_003487626.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174324 3174612 . + . KQ414646.1 exonerate:protein2genome:local exon 3174324 3174612 . + . insertions 0 ; deletions 0 ; frameshifts 1 KQ414646.1 exonerate:protein2genome:local similarity 3174324 3174612 196 + . alignment_id 6 ; Query gi|350406010|ref|XP_003487626.1| ; Align 3174324 91 54 ; Align 3174379 109 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350406010|ref|XP_003487626.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 68 -> 184 Target range: 3150026 -> 3150371 69 : LeuIleGluLysIleAlaMetPheTyrThrIleGlnAsnAlaPheCysValLeuSe : 87 ||| !..!..!:!:.!!!!:!:!|||||||||! ! ! !.!! ||||||!! LeuTyrArgSerValThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCy 3150027 : CTTTACAGGTCGGTGACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTG : 3150081 88 : rLeuIleValAlaThrLeuMetThrAspPheLysLeuLysLysLeuAlaPheArgA : 106 !:!!|||:!!:!!:!!|||:!: !||||||!!. !::!:!!||||||!:!|||| sMetIleLeuSerSerLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgA 3150082 : TATGATCCTCTCTTCGTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAG : 3150138 107 : laTrpLeuProPheAspPheThrSerSerTrpPheThrPheSerMetThrPheIle : 124 |||||||||||||||||!:!:!! ! !! !:! !:!! !!!:.!!!:!:!! laTrpLeuProPheAspTyrSerLeuProThrTyr---TyrTyrIleAlaTyrVal 3150139 : CCTGGCTGCCCTTCGATTACTCTCTGCCAACTTAC---TATTACATCGCGTACGTT : 3150189 125 : TyrGlnPheValGlySerMetValIleSerAlaGlyIleSerIlePheAspThrLe : 143 :!!|||.!!|||!.! !!!:! !! ||| !..!! ! ! !! !|||..!:! HisGlnIleValAlaLeuIleGlyThrSerLeuSerAsnValAlaCysAspValIl 3150190 : CATCAGATCGTCGCGCTGATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGAT : 3150246 144 : uPheAlaGlyLeuLeuLeuGlnIleCysCysGlnPheGluIleLeuValAsnArgL : 162 !.!!..!|||||||||:!!!!. !||| !!||| ||||||||| !:!!|||: eIleCysGlyLeuLeuValHisAlaCysGlyGlnGlnGluIleLeuLysHisArgM 3150247 : CATCTGCGGGTTGCTCGTTCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAA : 3150303 163 : euHisAsnIleGlyGlyAspGluIleLeuSerLeuLysHisCysValArgHisHis : 180 !! ! .!.!!: ! !!!::!!! ! !!:!:!! ! ! !|||||| !||| etLysGluMetThrGlnGluGlnArgProAsnIleGlyLysIleValArgPheHis 3150304 : TGAAGGAGATGACGCAGGAACAGAGGCCGAATATCGGGAAAATCGTTCGTTTCCAC : 3150357 181 : AsnAlaIleTyr : 184 :!! !:!!||| AspTyrLeuTyr 3150358 : GATTATCTTTAC : 3150371 vulgar: gi|350406010|ref|XP_003487626.1| 68 184 . KQ414646.1 3150026 3150371 + 164 M 49 147 G 1 0 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150027 3150371 164 + . gene_id 7 ; sequence gi|350406010|ref|XP_003487626.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150027 3150371 . + . KQ414646.1 exonerate:protein2genome:local exon 3150027 3150371 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3150027 3150371 164 + . alignment_id 7 ; Query gi|350406010|ref|XP_003487626.1| ; Align 3150027 69 147 ; Align 3150174 119 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350406010|ref|XP_003487626.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 252 -> 310 Target range: 3161001 -> 3161175 253 : SerLeuAspIleProAsnMetIleTyrHisSerAspTrpThrAsnLeuSerAsnAs : 271 ||||||!!:||| !:!!! :!!!:!.!.|||:!!|||||| ||||||.!... SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSe 3161002 : AGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAG : 3161056 272 : pAlaLysLysMetLeuMetValIleMetAlaArgSerLeuThrProValGluIleT : 290 !.!!||||||! |||:!!..!|||||| !|||||||||! !|||:!!|||.!!| rThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheT 3161057 : CACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCA : 3161113 291 : hrSerAlaTyrIleLeuProMetAsnLeuGluSerPheLysGlyLeuIleLysThr : 308 ||.!!|||!:!:!!!!!|||:!:||||||||||||||||||.!!:!! ! hrGlyAlaPheValPheProValAsnLeuGluSerPheLysSerValCysIleLys 3161114 : CCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAAAGTGTTTGTatcaaa : 3161167 309 : ThrTyr : 310 ||| IleTyr 3161168 : atatat : 3161175 vulgar: gi|350406010|ref|XP_003487626.1| 252 310 . KQ414646.1 3161001 3161175 + 149 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3161002 3161175 149 + . gene_id 8 ; sequence gi|350406010|ref|XP_003487626.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3161002 3161175 . + . KQ414646.1 exonerate:protein2genome:local exon 3161002 3161175 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3161002 3161175 149 + . alignment_id 8 ; Query gi|350406010|ref|XP_003487626.1| ; Align 3161002 253 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350406010|ref|XP_003487626.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 252 -> 310 Target range: 3175212 -> 3175386 253 : SerLeuAspIleProAsnMetIleTyrHisSerAspTrpThrAsnLeuSerAsnAs : 271 ||||||!!:||| !:!!! :!!!:!.!.|||:!!|||||| ||||||.!... SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSe 3175213 : AGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAG : 3175267 272 : pAlaLysLysMetLeuMetValIleMetAlaArgSerLeuThrProValGluIleT : 290 !.!!||||||! |||:!!..!|||||| !|||||||||! !|||:!!|||.!!| rThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheT 3175268 : CACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCA : 3175324 291 : hrSerAlaTyrIleLeuProMetAsnLeuGluSerPheLysGlyLeuIleLysThr : 308 ||.!!|||!:!:!!!!!|||:!:||||||||||||||||||.!!:!! ! hrGlyAlaPheValPheProValAsnLeuGluSerPheLysSerValCysIleLys 3175325 : CCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAAAGTGTTTGTatcaaa : 3175378 309 : ThrTyr : 310 ||| IleTyr 3175379 : atatat : 3175386 vulgar: gi|350406010|ref|XP_003487626.1| 252 310 . KQ414646.1 3175212 3175386 + 149 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3175213 3175386 149 + . gene_id 9 ; sequence gi|350406010|ref|XP_003487626.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3175213 3175386 . + . KQ414646.1 exonerate:protein2genome:local exon 3175213 3175386 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3175213 3175386 149 + . alignment_id 9 ; Query gi|350406010|ref|XP_003487626.1| ; Align 3175213 253 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350406010|ref|XP_003487626.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 184 -> 252 Target range: 3155805 -> 3156012 185 : ArgPheAlaGluMetValAsnAsnLeuPheSerLysMetMetCysValGlnPheMe : 203 ||||||.!!! |||:!!|||.!.! !|||..!! ! !!!:! !..!|||||| ArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAl 3155806 : AGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGC : 3155860 204 : tValSerAlaAlaAlaIleCysPheAsnValTyrArgValThrGluSerAsnAlaG : 222 !||||||.!! !|||||||||||||||:!!|||! !:!!|||! !|||:!!!.! aValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValT 3155861 : GGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGA : 3155917 223 : lySer<->GlnLeuIleGlySerValLeuPheIlePheSerAlaLeuLeuGlnThr : 239 ! !! ::!! !:!:! !! !:!!:!!!:!! ! !!!! !||| !|||! ! hrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIle 3155918 : CGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATA : 3155971 240 : PheTyrPheCysTrpPheGlyAspValAlaLysLeuLys : 252 ||| !!:!||||||!:!|||:!!! !!.!||||||||| PheIleTyrCysTrpTyrGlyAsnGluValLysLeuLys 3155972 : TTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAG : 3156012 vulgar: gi|350406010|ref|XP_003487626.1| 184 252 . KQ414646.1 3155805 3156012 + 123 M 39 117 G 0 3 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155806 3156012 123 + . gene_id 10 ; sequence gi|350406010|ref|XP_003487626.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155806 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155806 3156012 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155806 3156012 123 + . alignment_id 10 ; Query gi|350406010|ref|XP_003487626.1| ; Align 3155806 185 117 ; Align 3155926 224 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350406010|ref|XP_003487626.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 251 -> 302 Target range: 3178743 -> 3178896 252 : LysSerLeuAspIleProAsnMetIleTyrHisSerAspTrpThrAsnLeuSerAs : 270 :!!||| ! ! :!! !.!. ||||||.!.! !||||||||| ||| !!!. GlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuProTh 3178744 : CAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCCCAC : 3178798 271 : nAspAlaLysLysMetLeuMetValIleMetAlaArgSerLeuThrProValGluI : 289 !||| !!:!||| |||:!!:!!||||||||||||||| ! !||||||:!!! rAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValLysM 3178799 : CGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTAAAA : 3178855 290 : leThrSerAlaTyrIleLeuProMetAsnLeuGluSerPhe : 302 !:||||||!.!:!!:!!:!! !:!:::! !||||||||| etThrSerGlyHisValValValLeuSerAlaGluSerPhe 3178856 : TGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTT : 3178896 vulgar: gi|350406010|ref|XP_003487626.1| 251 302 . KQ414646.1 3178743 3178896 + 112 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178744 3178896 112 + . gene_id 11 ; sequence gi|350406010|ref|XP_003487626.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178744 3178896 . + . KQ414646.1 exonerate:protein2genome:local exon 3178744 3178896 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178744 3178896 112 + . alignment_id 11 ; Query gi|350406010|ref|XP_003487626.1| ; Align 3178744 252 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350406010|ref|XP_003487626.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 70 -> 165 Target range: 3177907 -> 3178189 71 : GluLysIleAlaMetPheTyrThrIleGlnAsnAlaPheCysValLeuSerLeuIl : 89 ..!|||:!:.!!!!:!:!! ! !|||! !|||! !! !..!!.!!!!! ! !! ArgLysLeuThrIleTyrCysGluIleLeuAsnGluSerAlaAlaPheLeuAlaTh 3177908 : AGAAAACTGACAATCTACTGCGAGATCCTGAACGAATCCGCCGCATTCTTAGCTAC : 3177962 90 : eValAlaThrLeuMetThrAspPheLysLeuLysLysLeuAlaPheArgAlaTrpL : 108 |||||| !! !! ! !.!.:::! !|||! ||| !!.!. !! !|||: rValAlaGlnTyrAsnGluPheIleArgSerLysThrLeuProIleSerAspTrpV 3177963 : GGTAGCACAGTACAACGAATTCATACGCTCCAAGACTTTGCCAATATCCGACTGGG : 3178019 109 : euProPheAspPheThrSerSerTrpPheThrPheSerMetThrPheIleTyrGln : 126 !!|||!:!|||!!. |||||| !!:!!!!!!::!!.!.:!::!!||| alProTyrAspLeu---SerSerGlnLysLeuTyrThrIleSerLeuLeuHisGln 3178020 : TGCCTTACGATTTG---TCCTCGCAAAAATTGTACACGATATCTCTGTTGCATCAA : 3178070 127 : PheValGlySerMetValIleSerAlaGlyIleSerIlePheAspThrLeuPheAl : 145 :!!||| !|||||| !:!! ! !! ! ! ! !!!:||||||.!!|| ThrIleGlyLeuMetValCysAlaAsnThrSerValAlaAsnGluThrLeuIleAl 3178071 : ACGATAGGCCTGATGGTCTGTGCGAACACCAGCGTGGCAAACGAAACACTTATCGC : 3178127 146 : aGlyLeuLeuLeuGlnIleCysCysGlnPheGluIleLeuValAsnArgLeuHisA : 164 |||||||:!!:!!||| ! !!...||||||||||||!!! !:!!||| !...| aGlyLeuMetIleGlnAlaGlyAlaGlnPheGluIlePheCysHisArgAlaArgA 3178128 : AGGGCTGATGATACAAGCTGGCGCGCAATTCGAGATATTTTGCCATCGAGCGAGAA : 3178184 165 : snIle : 165 ||:!! snLeu 3178185 : ATCTA : 3178189 vulgar: gi|350406010|ref|XP_003487626.1| 70 165 . KQ414646.1 3177907 3178189 + 104 M 42 126 G 1 0 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3177908 3178189 104 + . gene_id 12 ; sequence gi|350406010|ref|XP_003487626.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3177908 3178189 . + . KQ414646.1 exonerate:protein2genome:local exon 3177908 3178189 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3177908 3178189 104 + . alignment_id 12 ; Query gi|350406010|ref|XP_003487626.1| ; Align 3177908 71 126 ; Align 3178034 114 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 335 -> 390 Target range: 3178740 -> 3178905 336 : GluGlnCysGlnLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuPr : 354 ...||| !!:!!||||||||||||!.!:!!||| !! !:!!||| ||||| SerGlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuPr 3178741 : TCCCAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCC : 3178795 355 : oAsnLysValIleLeuAspLeuIleLeuIleIleAlaArgSerSerThrValValH : 373 |!.! ! :!!! !||||||:!:||||||!!:|||||||||!.! ! !||| oThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValL 3178796 : CACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTA : 3178852 374 : isLeuThrAlaGlyLysPheIleGlnMetSerValTyrThrPheGlyAsnVal : 390 ! :!!|||::!||| ! !!:!! :!:|||!.! ! :!!||| !::!||| ysMetThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerVal 3178853 : AAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTT : 3178905 vulgar: gi|350422517|ref|XP_003493188.1| 335 390 . KQ414646.1 3178740 3178905 + 109 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178741 3178905 109 + . gene_id 1 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178741 3178905 . + . KQ414646.1 exonerate:protein2genome:local exon 3178741 3178905 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178741 3178905 109 + . alignment_id 1 ; Query gi|350422517|ref|XP_003493188.1| ; Align 3178741 336 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 336 -> 391 Target range: 3178740 -> 3178905 337 : GluGlnCysGlnLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuPr : 355 ...||| !!:!!||||||||||||!.!:!!||| !! !:!!||| ||||| SerGlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuPr 3178741 : TCCCAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCC : 3178795 356 : oAspLysIleIleLeuAspLeuIleLeuIleIleAlaArgSerSerMetValValH : 374 | ! ! |||! !||||||:!:||||||!!:|||||||||!.! !||| oThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValL 3178796 : CACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTA : 3178852 375 : isIleThrAlaGlyLysLeuValHisMetSerValTyrThrPheGlyAspVal : 391 ! !!:|||::!||| ! :!!||| !:!:|||!.! ! :!!||| !..!||| ysMetThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerVal 3178853 : AAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTT : 3178905 vulgar: gi|350422508|ref|XP_003493185.1| 336 391 . KQ414646.1 3178740 3178905 + 109 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178741 3178905 109 + . gene_id 1 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178741 3178905 . + . KQ414646.1 exonerate:protein2genome:local exon 3178741 3178905 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178741 3178905 109 + . alignment_id 1 ; Query gi|350422508|ref|XP_003493185.1| ; Align 3178741 337 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350406010|ref|XP_003487626.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 630 Query range: 0 -> 322 Target range: 1947232 -> 1945683 1 : MetAspIlePheTyrAsnValGluThrGlnAspAspLeuSerGluAsnPheSerVa : 19 :!:|||:!! !|||||||||!:!|||||||||!!!|||:::||||||||||| LeuAspValAlaIleAsnValGluSerGlnAspAspPheSerAspAsnPheSerVa 1947232 : TTAGACGTAGCGATCAACGTGGAGAGCCAGGATGACTTCAgtgacaatttttctgt : 1947178 20 : lThrValThrValLeuIleThrSerCysLysPheValSerLeuValLeuGlyArgL : 38 ||||!.!..!|||!!!:!!|||!!!! !|||.!! !! !|||:!!:!! !!||| lThrAlaValValPheLeuThrTrpPheLysLeuSerIleLeuLeuIleArgArgG 1947177 : caCCGCTGTGGTGTTTCTCACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTG : 1947121 39 : ysThrIleIleAsnIleLeuGlyLeuLeuLysLysLysProPheValProGluAsn : 56 !!.!.!!||| !:!::!!! ! !|||:!!!!.||||||||| !|||! !:!! lyAsnPheIlePheLeuIleAspThrLeuGlnAsnLysProPheSerProValAsp 1947120 : GAAACTTTATATTTCTGATCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGAC : 1947067 57 : AsnGluGluAlaGluIleTyrAlaLysTyrAspAsnLeuIle{Gl} >>>> Tar : 71 !..|||||| !|||||| ||||||!:!!!:!!.:!!! !{||} ThrGluGluAsnGluIleArgAlaLysPheGluLysIleThr{Gl}++ 1947066 : ACGGAAGAGAACGAGATTAGAGCGAAATTCGAGAAGATCACC{GA}gt........ : 1947018 72 : get Intron 1 >>>> {u}LysIleAlaMetPheTyrThrIleGlnAsnAlaP : 83 107 bp {|} !! !.!!!!: !||| !! . ++{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuI 1947017 : .................ag{A}TGGAACACGATTGGCTACTGGAGtttactattaa : 1946879 84 : heCysValLeuSerLeuIleValAlaThrLeuMetThrAspPheLysLeuLysLys : 101 .. ..!!!!! !:!! !||| !:!!|||:!!! !||||||!.. !!:!||| leSerThrPhePheIleTyrValArgSerLeuLeuIleAspPheSerAsnArgLys 1946878 : tttctacGTTCTTTATATACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAA : 1946825 102 : LeuAlaPheArgAlaTrpLeuProPheAspPheThrSerSerTrpPheThrPheSe : 120 ||| !||||||||||||:!!|||!:!|||!:!:!! !!:!! .!! |||! LeuMetPheArgAlaTrpIleProTyrAspTyrSerProAlaProIle---PheIl 1946824 : CTGATGTTTCGAGCATGGATACCCTACGATTACTCCCCTGCGCCCATT---TTTAT : 1946771 121 : rMetThrPheIleTyrGlnPheValGlySerMetValIleSerAlaGlyIleSerI : 139 !:!:||||||:!!:!!||| !:!!!.!:!!! !:!! !!!!.!!..!! ! !! eLeuThrPheValHisGlnAlaIleAlaAlaThrIleCysCysThrSerSerValT 1946770 : CCTTACCTTCGTCCATCAAGCTATAGCCGCGACGATATGTTGCACTTCGAGCGTCA : 1946714 140 : lePheAspThrLeuPheAlaGlyLeuLeuLeuGlnIleCysCysGlnPheGluIle : 157 ! ! |||:!!|||!:!.!!|||||||||:!!.!.|||! !||||||||||||||| hrValAspSerLeuTyrThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIle 1946713 : CTGTGGATTCTCTATACACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATA : 1946660 158 : LeuValAsnArgLeuHisAsnIleGlyGlyAspGluIleLeuSerLeuLysHisCy : 176 |||! !:!!||||||...|||:!! ! !!!::!! ! !|||:!!|||!!.|| LeuGluHisArgLeuArgAsnValLysThrGluGlnAspAspSerValLysGlnCy 1946659 : CTAGAACATCGTCTAAGGAACGTTAAAACTGAGCAGGATGACTCTGTGAAGCAATG : 1946603 177 : sValArgHisHisAsnAlaIleTyr{Ar} >>>> Target Intron 2 >>>> : 185 |!.!!:!||||||:!! !||||||{!:} 325 bp sAlaGlnHisHisAspArgIleTyr{Gl}++ 1946602 : TGCTCAACATCACGATCGTATATAC{CA}gt......................... : 1946572 186 : {g}PheAlaGluMetValAsnAsnLeuPheSerLysMetMetCysValGlnPhe : 202 {!}|||:!!:!!! !||||||.!. !|||!.! !!!::!! ! !|||||| ++{n}PheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPhe 1946571 : ag{A}TTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTC : 1946200 203 : MetValSerAlaAlaAlaIleCysPheAsnValTyrArgValThrGluSerAsnAl : 221 :!!||| !:!!!.!||||||||||||:!!||||||:!!|||:!!! !!!. CysIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMe 1946199 : TGCATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAAT : 1946143 222 : aGlySerGlnLeuIleGlySerValLeuPheIlePheSerAlaLeuLeuGlnThrP : 240 !! ::::::...::: :!!|||!:! !|||!!!.!!:!! !|||! !| tAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIleP 1946142 : GGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATAT : 1946086 241 : heTyrPheCysTrpPheGlyAspValAlaLysLeuLys >>>> Target Intr : 253 |||||!:!||||||!:!|||:!!! !!.!||| !||| 80 bp heTyrTyrCysTrpTyrGlyAsnGluValLysAspLys++ 1946085 : TTTACTATTGCTGGTACGGCAACGAAGTGAAAGATAAGgt................ : 1946045 254 : on 3 >>>> SerLeuAspIleProAsnMetIleTyrHisSerAspTrpThrAsn : 267 ||||||.!.:!!||| !!||||||!:!|||||||||||||||::! ++SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSer 1946044 : .........agAGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTCT : 1945925 268 : LeuSerAsnAspAlaLysLysMetLeuMetValIleMetAlaArgSerLeuThrPr : 286 |||!:!|||:!!!.!! !:! |||:!::!!!!:||| !|||:!!:!!! !|| LeuAsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgPr 1945924 : TTGAACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCC : 1945868 287 : oValGluIleThrSerAlaTyrIleLeuProMetAsnLeuGluSerPheLysGly : 305 |:!!|||.!!|||||| !:!!:!!:!! !!:!!|||||||||||||||! !!.! oIleGluPheThrSerIleHisValValSerValAsnLeuGluSerPheMetAla+ 1945867 : AATAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAg : 1945811 306 : >>>> Target Intron 4 >>>> LeuIleLysThrThrTyrSerThrTyrA : 314 74 bp :!!|||||||||:!!||||||.!!!:!| + ++ValIleLysThrSerTyrSerAlaPheA 1945810 : t.........................agGTAATAAAAACTTCGTACTCCGCGTTCA : 1945710 315 : snMetLeuLeuGlnSerLysSerSer : 322 |||||:!!! !|||||||||..!||| snMetIleGlnGlnSerLysGlnSer 1945709 : ACATGATCCAACAAAGCAAACAATCG : 1945684 vulgar: gi|350406010|ref|XP_003487626.1| 0 322 . KQ414661.1 1947232 1945683 - 630 M 70 210 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 46 138 G 1 0 M 66 198 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 67 201 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945684 1947232 630 - . gene_id 1 ; sequence gi|350406010|ref|XP_003487626.1| ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1947021 1947232 . - . KQ414661.1 exonerate:protein2genome:local exon 1947021 1947232 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1947019 1947020 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946914 1947020 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1946914 1946915 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946575 1946913 . - . KQ414661.1 exonerate:protein2genome:local exon 1946575 1946913 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local splice5 1946573 1946574 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946250 1946574 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1946250 1946251 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946048 1946249 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946249 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946046 1946047 . - . intron_id 3 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945968 1946047 . - . intron_id 3 KQ414661.1 exonerate:protein2genome:local splice3 1945968 1945969 . - . intron_id 2 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945812 1945967 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1945967 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 4 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 4 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 3 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945684 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945684 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945684 1947232 630 - . alignment_id 1 ; Query gi|350406010|ref|XP_003487626.1| ; Align 1947233 1 210 ; Align 1946913 72 138 ; Align 1946775 119 198 ; Align 1946249 186 201 ; Align 1945968 253 156 ; Align 1945738 305 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350417424|ref|XP_003491416.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414667.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold102, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1563 Query range: 0 -> 387 Target range: 806042 -> 801445 1 : MetSerAspGlnGlnPheSerGlyLysGluTyrAspGluLeuIleLysProIleMetI : 20 |||!:!! !!:!! !!:!!:!..!|||||||||||||||||||||!:!|||||||||: MetAsnAlaArgProTyrAsnAsnLysGluTyrAspGluLeuIleArgProIleMetL 806042 : ATGAATGCTCGACCGTACAATAACAAGGAATACGATGAACTGATCAGACCCATCATGT : 805985 21 : leThrAlaLysIleIleSerIleTrpProLeuGluGluAspSerGlyLysGlyThrIl : 39 !!||||||||||||||||||||||||||||||! !|||:!!|||!.!! !|||.!!|| euThrAlaLysIleIleSerIleTrpProLeuAlaGluAsnSerAlaThrGlyAlaIl 805984 : TAACCGCAAAGATCATTTCCATCTGGCCGTTGGCAGAGAATAGCGCTACGGGGGCTAT : 805928 40 : eLeuPheArgArgPheHisLeuPheCysMetPhePheLeu >>>> Target Intr : 53 ||||||||||||||||||||||.!!||||||||||||||| 684 bp eLeuPheArgArgPheHisLeuLeuCysMetPhePheLeu++ 805927 : ATTGTTCAGGAGATTCCACTTGCTCTGCATGTTTTTTCTGgt................ : 805884 54 : on 1 >>>> AlaValValMetSerIleAlaValThrAlaAspValValHisAsnIl : 68 !.!|||||||||||||||||||||||||||||||||:!!|||||||| ++ValValValMetSerIleAlaValThrAlaAspValIleHisAsnIl 805883 : .........agGTGGTGGTGATGTCGATCGCGGTGACGGCCGACGTGATCCACAATAT : 805157 69 : eAspAspLeuAsnGluAlaThrGluCysAlaLeuIleCysThrAlaPheTyrLeuCys : 87 ||||||||||:!!||||||||||||||||||||||||||||||||||||||||||||| eAspAspLeuAspGluAlaThrGluCysAlaLeuIleCysThrAlaPheTyrLeuCys 805156 : CGACGATTTGGACGAAGCGACCGAGTGTGCGTTGATTTGCACAGCATTTTACCTTTGC : 805100 88 : ValValArgLeuLeuValTyrSerLeuHisGlnLysAspMetPheTyrValValLysT : 107 |||||||||:!!:!!||||||:!!:!!|||||||||||||||.!!|||||||||!!.| ValValArgMetValValTyrAlaIleHisGlnLysAspMetLeuTyrValValAsnT 805099 : GTTGTTCGCATGGTGGTGTACGCGATTCATCAGAAAGATATGCTTTACGTAGTGAACA : 805040 108 : hrMetLysGluAspTrpIleLeuSerSerHisGluAspArgThrIleLeuAlaLysLy : 126 |||||!:! ||||||! ! !|||||| ! |||||||||..!|||||||||:!!|| hrMetArgIleAspTrpThrGluSerSerLysGluAspArgValIleLeuAlaGluLy 805039 : CAATGAGGATCGATTGGACTGAATCTTCAAAAGAGGATCGTGTTATTCTAGCGGAGAA : 804983 127 : sThrMetPheAlaPheArgLeuAlaLysTyrPheIleSerThrValAlaMetThrIle : 145 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| sThrMetPheAlaPheArgLeuAlaLysTyrPheIleSerThrValAlaAlaThrIle 804982 : AACGATGTTCGCCTTTCGTCTTGCCAAGTACTTTATCAGTACCGTGGCTGCAACTATC : 804926 146 : ValLeuPheMetCysIleProPheLeuGlu >>>> Target Intron 2 >>>> : 156 |||:!!|||||||||||||||.!!|||||| 728 bp ValMetPheMetCysIleProIleLeuGlu++ + 804925 : GTGATGTTCATGTGCATTCCGATTCTAGAGgt.........................a : 804167 157 : IleTyrAlaPheGlySerAsnGluArgValLeuProPheArgGlyTyrPhePheVal : 174 ||||||!.!.!!||| !!.!!:!:!|||||||||||||||||||||||||||:!! +IleTyrValLeuGly---LysAspLysValLeuProPheArgGlyTyrPhePheLeu 804166 : gATTTACGTGCTTGGT---AAGGACAAAGTGCTCCCATTCCGAGGTTACTTCTTCCTC : 804114 175 : AsnHisThrIleSerProValPheGluCysLeuTyrPhePheAsnValThrAlaGlyG : 194 |||!!.|||:!:||||||:!!|||||||||||||||.!.||||||||||||||||||| AsnGlnThrValSerProIlePheGluCysLeuTyrLeuPheAsnValThrAlaGlyG 804113 : AATCAAACCGTGTCGCCGATCTTCGAGTGCTTGTACCTGTTCAACGTGACCGCTGGTG : 804054 195 : lyPheGlyGlySerMetIleAlaGlyAlaThrSerPheAsnLeuValValIleMetHi : 213 |||||||||||!!!|||||||||.!!..!||||||||||||||||||||||||||||| lyPheGlyGlyThrMetIleAlaSerCysThrSerPheAsnLeuValValIleMetHi 804053 : GATTCGGCGGTACGATGATCGCCAGTTGCACCAGTTTCAATCTGGTGGTAATAATGCA : 803997 214 : sGlySerGlyLysPheAlaValLeuArgLysArgLeuGluAlaLeuSerGlyGluAsp : 232 |||||||!.!||||||||||||||||||!:!|||||||||||||||||||||:!!||| sGlySerAlaLysPheAlaValLeuArgArgArgLeuGluAlaLeuSerGlyLysAsp 803996 : CGGCTCGGCCAAGTTTGCTGTTCTACGGAGAAGATTGGAGGCTCTCAGCGGCAAGGAT : 803940 233 : ProAsnSerThrAlaIleMetSerAsnTyrValIleArgHisGlnLysAlaIle{Gl} : 251 ||||||||||||.!!:!!|||.!!:!!! |||||||||||||||:!!||||||{||} ProAsnSerThrThrValMetGlyAspLeuValIleArgHisGlnGluAlaIle{Gl} 803939 : CCTAATTCTACTACTGTTATGGGGGATTTAGTGATTCGCCACCAGGAAGCAATA{GA} : 803883 252 : >>>> Target Intron 3 >>>> {u}TyrAlaAspAlaLeuGluArgIleIl : 260 696 bp {|}|||||||||||||||||||||||||| ++ ++{u}TyrAlaAspAlaLeuGluArgIleIl 803882 : gt.........................ag{G}TACGCAGATGCACTGGAAAGGATCAT : 803160 261 : eAsnValLeuAlaLeuGlyGlnPheIleIleSerThrGlyLeuIleCysPheAlaGly : 279 |||||||||||||||||||||||||:!!|||||||||||||||||||||||||||||| eAsnValLeuAlaLeuGlyGlnPheValIleSerThrGlyLeuIleCysPheAlaGly 803159 : AAATGTTCTGGCTTTGGGACAATTCGTCATTAGCACAGGTCTGATCTGCTTCGCGGGA : 803103 280 : PheGlnIleThrSer >>>> Target Intron 4 >>>> MetMetLysAspLy : 289 ||||||||||||||| 61 bp ||||||:!!||||| PheGlnIleThrSer++ ++MetMetGluAspLy 803102 : TTCCAGATCACCTCGgt.........................agATGATGGAGGATAA : 803012 290 : sGlyArgLeuMetLysTyrSerThrPheLeuAsnSerAlaIleLeuGluLeuPheMet : 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| sGlyArgLeuMetLysTyrSerThrPheLeuAsnSerAlaIleLeuGluLeuPheMet 803011 : AGGACGGCTGATGAAATATTCCACCTTCTTGAACTCCGCCATTCTCGAGCTGTTCATG : 802955 309 : PheSerPheSerGlyAsnGlyLeuIleAspGlu >>>> Target Intron 5 >> : 320 ||||||||||||||||||||||||||||||||| 1119 bp PheSerPheSerGlyAsnGlyLeuIleAspGlu++ 802954 : TTCAGCTTCAGCGGAAACGGCCTGATAGACGAGgt....................... : 802917 321 : >> SerGlyAlaValGlyAspSerAlaTyrGlySerGlyTrpIleGlySerArgPhe : 337 |||! !|||||||||!!:|||||||||||||||||||||||||||||||||||| ++SerAspAlaValGlyGluSerAlaTyrGlySerGlyTrpIleGlySerArgPhe 802916 : ..agAGCGACGCGGTAGGCGAGTCAGCTTATGGCAGCGGATGGATCGGTAGTCGTTTC : 801749 338 : SerGlnSerLeuGlnIleMetMetMetArgAlaArgIleProSerLysIleThrAlaA : 357 ||||||||||||||||||||||||||||||:!!|||||||||!!!||||||||||||| SerGlnSerLeuGlnIleMetMetMetArgSerArgIleProCysLysIleThrAlaA 801748 : TCTCAGAGTCTTCAGATCATGATGATGCGCTCGAGGATACCATGCAAGATAACCGCCG : 801689 358 : laLysPheTyrAlaMetSerLeuGluSerPheSerAla >>>> Target Intron : 370 |||||||||||::!||||||||||||||||||||| ! 151 bp laLysPheTyrSerMetSerLeuGluSerPheSerLys++ 801688 : CTAAATTCTACAGCATGTCCTTGGAGAGCTTCTCGAAGgt.................. : 801648 371 : 6 >>>> ValLeuSerThrSerPheSerTyrPheThrValLeuThrAlaThrGluG : 386 |||||||||||||||||||||||||||||||||||||||||||||:!!! ++ValLeuSerThrSerPheSerTyrPheThrValLeuThrAlaThrLysA 801647 : .......agGTACTCAGCACGTCTTTCTCCTACTTCACGGTCCTCACAGCCACCAAAG : 801451 387 : lyAsp : 387 !||| spAsp 801450 : ACGAC : 801446 vulgar: gi|350417424|ref|XP_003491416.1| 0 387 . KQ414667.1 806042 801445 - 1563 M 52 156 5 0 2 I 0 680 3 0 2 M 103 309 5 0 2 I 0 724 3 0 2 M 5 15 G 1 0 M 89 267 S 0 2 5 0 2 I 0 692 3 0 2 S 1 1 M 33 99 5 0 2 I 0 57 3 0 2 M 35 105 5 0 2 I 0 1115 3 0 2 M 50 150 5 0 2 I 0 147 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414667.1 exonerate:protein2genome:local gene 801446 806042 1563 - . gene_id 1 ; sequence gi|350417424|ref|XP_003491416.1| ; gene_orientation + KQ414667.1 exonerate:protein2genome:local cds 805887 806042 . - . KQ414667.1 exonerate:protein2genome:local exon 805887 806042 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 805885 805886 . - . intron_id 1 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 805203 805886 . - . intron_id 1 KQ414667.1 exonerate:protein2genome:local splice3 805203 805204 . - . intron_id 0 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 804894 805202 . - . KQ414667.1 exonerate:protein2genome:local exon 804894 805202 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 804892 804893 . - . intron_id 2 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 804166 804893 . - . intron_id 2 KQ414667.1 exonerate:protein2genome:local splice3 804166 804167 . - . intron_id 1 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 803882 804165 . - . KQ414667.1 exonerate:protein2genome:local exon 803882 804165 . - . insertions 0 ; deletions 1 KQ414667.1 exonerate:protein2genome:local splice5 803880 803881 . - . intron_id 3 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 803186 803881 . - . intron_id 3 KQ414667.1 exonerate:protein2genome:local splice3 803186 803187 . - . intron_id 2 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 803086 803185 . - . KQ414667.1 exonerate:protein2genome:local exon 803086 803185 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 803084 803085 . - . intron_id 4 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 803025 803085 . - . intron_id 4 KQ414667.1 exonerate:protein2genome:local splice3 803025 803026 . - . intron_id 3 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 802920 803024 . - . KQ414667.1 exonerate:protein2genome:local exon 802920 803024 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 802918 802919 . - . intron_id 5 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801801 802919 . - . intron_id 5 KQ414667.1 exonerate:protein2genome:local splice3 801801 801802 . - . intron_id 4 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801651 801800 . - . KQ414667.1 exonerate:protein2genome:local exon 801651 801800 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 801649 801650 . - . intron_id 6 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801500 801650 . - . intron_id 6 KQ414667.1 exonerate:protein2genome:local splice3 801500 801501 . - . intron_id 5 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801446 801499 . - . KQ414667.1 exonerate:protein2genome:local exon 801446 801499 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local similarity 801446 806042 1563 - . alignment_id 1 ; Query gi|350417424|ref|XP_003491416.1| ; Align 806043 1 156 ; Align 805203 53 309 ; Align 804166 156 15 ; Align 804151 162 267 ; Align 803185 252 99 ; Align 803025 285 105 ; Align 801801 320 150 ; Align 801500 370 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350415148|ref|XP_003490548.1| PREDICTED: odorant receptor 47a-like [Bombus impatiens] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 295 -> 391 Target range: 1387453 -> 1387955 296 : MetAlaIleLysThrPheIleValLeuSerThrLeuLeuValGlnLeuPheAlaTy : 314 :!: !:!:||| !||| ! !! ! !.!!:!! ! !:!! !||| !! LeuIleLeuLysCysPheProTyrTyrValAlaValAsnCysGluAlaPheIleLe 1387454 : TTAATACTGAAATGTTTTCCCTATTACGTTGCTGTTAATTGTGAAGCATTCATTTT : 1387508 315 : rSerTyrValGlyGluTyrLeuLysLeuGln >>>> Target Intron 1 >> : 325 !!!|||..!||||||||||||! ! !:!! 79 bp uCysTyrThrGlyGluTyrLeuThrSerLys++ 1387509 : ATGTTATACCGGAGAATATCTAACCTCTAAGgt....................... : 1387543 326 : >> MetGluGlyValGlyAspSerValTyrPheCysSerTrpTyrAspIleProT : 342 ||| !!:!! !.!.||||||||| |||||||||:!! ! ++SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysP 1387544 : ..agagtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAAC : 1387671 343 : hrSerIleAlaLysAsnIleIleTyrValIleMetArgSerGlnAspProValSer : 360 !! !! !|||::: :::::: :::|||:::||||||||| ! !:!!! ! roArgGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIle 1387672 : CTCGAGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATA : 1387725 361 : LeuAsnAlaGlyLysPhePheThrValAsnMetGluThrTyrMetSer >>>> T : 377 |||!.!|||||||||||| ! !.!:!!::!:!!! .!!!:! !:: LeuThrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387726 : CTCACTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt...... : 1387778 378 : arget Intron 2 >>>> IleLeuLysThrSerMetSerTyrLeuSerValLe : 388 135 bp :::||||||.!!||| ||||||:!!|||||||| ++MetLeuLysAlaSerAlaSerTyrValSerValLe 1387779 : ...................agatgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTT : 1387944 389 : uArgValMet : 391 |!.!!.!||| uHisAlaMet 1387945 : GCATGCAATG : 1387955 vulgar: gi|350415148|ref|XP_003490548.1| 295 391 . KQ414716.1 1387453 1387955 + 147 M 29 87 5 0 2 I 0 75 3 0 2 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387454 1387955 147 + . gene_id 1 ; sequence gi|350415148|ref|XP_003490548.1| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387454 1387540 . + . KQ414716.1 exonerate:protein2genome:local exon 1387454 1387540 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387541 1387542 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387541 1387619 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387618 1387619 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 2 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 1 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387454 1387955 147 + . alignment_id 1 ; Query gi|350415148|ref|XP_003490548.1| ; Align 1387454 296 87 ; Align 1387620 325 156 ; Align 1387911 377 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350415148|ref|XP_003490548.1| PREDICTED: odorant receptor 47a-like [Bombus impatiens] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 291 -> 388 Target range: 1401332 -> 1402796 292 : GlyAsnIleValMetAlaIleLysThrPheIleValLeuSerThrLeuLeuValGl : 310 ..!...:!! !:!! !:!!|||:::...::: ..!:!!! !:!!:! AsnGlyValProLeuLeuLeuLysSerLeuLeuPheTyrValValIleCysLeuGl 1401333 : AATGGAGTTCCTCTGTTACTCAaatctcttttattttatgtgGTTATTTGTTTAGA : 1401387 311 : nLeuPheAlaTyrSerTyrValGlyGluTyrLeuLysLeuGln >>>> Target : 325 ! !||| !|||!!!!:!|||||||||||||||!..:!!:!! 10 uAlaPheIleTyrCysPheValGlyGluTyrLeuSerIleLys++ 1401388 : AGCGTTTATATACTGCTTTGTCGGAGAATATCTCAGTATCAAGgt........... : 1401434 326 : Intron 1 >>>> MetGluGlyValGlyAspSerValTyrPheCysSerTrpT : 338 04 bp ! :!! !:!!|||:!!!!!!.!||| ! ! !|||| ++SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpT 1401435 : ..............agAGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGT : 1402475 339 : yrAspIleProThrSerIleAlaLysAsnIleIleTyrValIleMetArgSerGln : 356 |||||:!!! !:!!!!! !::!:!! !:!!||| !||||||:!!||||||||| yrAspLeuArgSerThrGluSerGlnLeuLeuIleProValIleLeuArgSerGln 1402476 : ACGATTTACGTTCAACTGAAAGCCAACTTCTAATACCTGTAATATTGAGGTCTCAA : 1402529 357 : AspProValSerLeuAsnAlaGlyLysPhePheThrValAsnMetGluThrTyrMe : 375 ! ! !!!!!!..... ||||||||| :::::!::!:!!|||!:!!:!! LysGlyPheThrPheThrPheGlyLysPheSerSerLeuSerLeuGluSerPheTh 1402530 : AAGGGTTTCACGTttacttttggaaaattttcaagtctCTCCTTGGAAAGCTTTAC : 1402586 376 : tSer >>>> Target Intron 2 >>>> IleLeuLysThrSerMetSerTy : 384 !:!! 169 bp |||:!!|||..!||| ||||| rAla++ ++IleMetLysValSerAlaSerTy 1402587 : GGCCgt.........................agATCATGAAAGTCTCAGCATCATA : 1402782 385 : rLeuSerValLeu : 388 |:!!||||||||| rIleSerValLeu 1402783 : TATATCAGTACTT : 1402796 vulgar: gi|350415148|ref|XP_003490548.1| 291 388 . KQ414716.1 1401332 1402796 + 141 M 33 99 5 0 2 I 0 1000 3 0 2 M 52 156 5 0 2 I 0 165 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401333 1402796 141 + . gene_id 2 ; sequence gi|350415148|ref|XP_003490548.1| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401333 1401431 . + . KQ414716.1 exonerate:protein2genome:local exon 1401333 1401431 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401432 1401433 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401432 1402435 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1402434 1402435 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402436 1402591 . + . KQ414716.1 exonerate:protein2genome:local exon 1402436 1402591 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1402592 1402593 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1402592 1402760 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1402759 1402760 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402761 1402796 . + . KQ414716.1 exonerate:protein2genome:local exon 1402761 1402796 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401333 1402796 141 + . alignment_id 2 ; Query gi|350415148|ref|XP_003490548.1| ; Align 1401333 292 99 ; Align 1402436 325 156 ; Align 1402761 377 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350415237|ref|XP_003490576.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 330 -> 397 Target range: 1387619 -> 1387955 331 : SerAsnGluIleAlaHisGlyValTyrAspSerProTrpTyrGlnProArgGlyHi : 349 |||.!....|||.!!!!....||||||::: ||||||.!.! !!:! !!. SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 350 : sValAlaArgAspLeuMetMetIleIleAsnArgGlyHisArgSerTyrHisValT : 368 .! !|||||| :::::::::|||||| |||..!!!.!:!..!! :!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 369 : hrAlaGlyLysPheLeuSerMetAsnIlePheThrPheLysGlu >>>> Targe : 383 ||||||||||||||:!!!:!:!:::!:!: !.!!||| .!. hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt.......... : 1387778 384 : t Intron 1 >>>> IleLeuArgSerSerAlaSerTyrLeuSerValLeuLys : 395 135 bp :::|||!:!:!!||||||||||||:!!||||||||| ! ++MetLeuLysAlaSerAlaSerTyrValSerValLeuHis 1387779 : ...............agatgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTTGCAT : 1387947 396 : ValMet : 397 !.!||| AlaMet 1387948 : GCAATG : 1387955 vulgar: gi|350415237|ref|XP_003490576.1| 330 397 . KQ414716.1 1387619 1387955 + 112 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387955 112 + . gene_id 1 ; sequence gi|350415237|ref|XP_003490576.1| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387955 112 + . alignment_id 1 ; Query gi|350415237|ref|XP_003490576.1| ; Align 1387620 331 156 ; Align 1387911 383 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 313 -> 397 Target range: 1387272 -> 1387799 314 : PheMetMetLeuIleSerIleCysPheAspIlePheValIleCysTyrIleSerGl : 332 !:!!!: ||| ...... ::::::.!.|||||||||!:!|||||| TyrIleSerLeuCysGlnPheLeuSerAsnMetLeuValIleCysPheIleSerPh 1387273 : TATATATCATTATgccaatttttatcgaatatgcTGGTTATCTGTTTCATAAGCTT : 1387327 333 : uIleLeuThrGlu >>>> Target Intron 1 >>>> GlnCysGlnLysVa : 341 :!!|||..! 278 bp ... :!!::::! eValLeuValThr++ ++Ser---GluArgIl 1387328 : CGTTTTGGTAACCgt.........................agagt---gAACGTAT : 1387629 342 : lGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAsnLysValIleLeuA : 360 ! !:!! |||||| |||||| !!||| ! !::!! ! !! eThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProArgGluAlaArgI 1387630 : TACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCGAGAAGCTCgta : 1387686 361 : spLeuIleLeuIleIleAlaArgSerSerThrValValHisLeuThrAlaGlyLys : 378 ::::::||||||||| ||||||..!! !! !:!! ||||||||||||||| leValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuThrAlaGlyLys 1387687 : ttgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCACTGCGGGCAAA : 1387740 379 : PheIleGlnMetSerValTyrThrPheGlyAsnValLeuLysThrGlyPheAlaTy : 397 |||:!:.!.:!:|||:!! !.!!|||!.!|||||| ... ...||| || PheValAsnLeuSerLeuAlaAlaPheAlaAsnValArgAsn***AsnPheArgTy 1387741 : TTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgtaagaaattgaaattttcggta : 1387797 398 : r : 397 | r 1387798 : T : 1387799 vulgar: gi|350422517|ref|XP_003493188.1| 313 397 . KQ414716.1 1387272 1387799 + 108 M 23 69 5 0 2 I 0 274 3 0 2 M 1 3 G 1 0 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387273 1387799 108 + . gene_id 1 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387273 1387341 . + . KQ414716.1 exonerate:protein2genome:local exon 1387273 1387341 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387342 1387343 . + . intron_id 1 ; splice_site "Gt" KQ414716.1 exonerate:protein2genome:local intron 1387342 1387619 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387618 1387619 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387620 1387799 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387799 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local similarity 1387273 1387799 108 + . alignment_id 1 ; Query gi|350422517|ref|XP_003493188.1| ; Align 1387273 314 69 ; Align 1387620 337 3 ; Align 1387623 339 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350415237|ref|XP_003490576.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 330 -> 395 Target range: 1345564 -> 1345837 331 : SerAsnGluIleAlaHisGlyValTyrAspSerProTrpTyrGlnProArgGlyHi : 349 |||::!|||!!: !!!.!.! !||| !||| !||||||.!. !! !! ! ! SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 350 : sValAlaArgAspLeuMetMetIleIleAsnArgGlyHisArgSerTyrHisValT : 368 !.!!|||...|||!!:.!. !||| !|||..!!!.!:! !!! :!!:!!| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 369 : hrAlaGlyLysPheLeuSerMetAsnIlePheThrPheLysGlu >>>> Targe : 383 ||||||||||||||! ! !.!.::::!! |||||| hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIle++ 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCgt.......... : 1345723 384 : t Intron 1 >>>> IleLeuArgSerSerAlaSerTyrLeuSerValLeuLys : 395 78 bp |||:!!!:!:!!||| !:!!|||||||||||||||||| ++IleValLysAlaSerMetAlaTyrLeuSerValLeuLys 1345724 : ...............agATAGTAAAAGCGTCGATGGCCTATCTTTCCGTTCTGAAA : 1345835 vulgar: gi|350415237|ref|XP_003490576.1| 330 395 . KQ414782.1 1345564 1345837 + 102 M 52 156 5 0 2 I 0 74 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345837 102 + . gene_id 1 ; sequence gi|350415237|ref|XP_003490576.1| ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345565 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345837 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345837 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345837 102 + . alignment_id 1 ; Query gi|350415237|ref|XP_003490576.1| ; Align 1345565 331 156 ; Align 1345799 383 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350415230|ref|XP_003490573.1| PREDICTED: odorant receptor 24a-like [Bombus impatiens] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 329 -> 392 Target range: 1345579 -> 1345846 330 : AspSerValTyrPheSerSerTrpTyrAspIleProThrSerValAlaLysAspIl : 348 .!.:!! !|||||||||!:!|||||||||:!!||| !!.! !.!!::!...:! GlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLysTyrThrArgSerLe 1345580 : CAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAAATACACGCGATCGTT : 1345634 349 : eIleTyrValIleMetArgThrGlnAspProValPheLeuLysAlaGlyLysPheP : 367 !|||!:! !||| |||:!!||| ! ||| !!:!|||! !||||||||||||! uIlePheCysIleAlaArgSerGlnLysProSerTyrLeuThrAlaGlyLysPheT 1345635 : AATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAGCTGGCAAGTTCT : 1345691 368 : heIleValAsnMetGluThrTyrMetSer >>>> Target Intron 1 >>>> : 377 :!:!: !!::::!:||||||!:! ! ! 78 bp yrValPheSerLeuGluThrPheGlyIle++ 1345692 : ACGTGTTCTCGTTAGAAACATTCGGCATCgt......................... : 1345723 378 : IleIleLysThrSerMetSerTyrLeuSerValLeuArgValMetVal : 392 |||:!!|||.!!||||||:!!|||||||||||||||!:! !!!::!! ++IleValLysAlaSerMetAlaTyrLeuSerValLeuLysSerIleIle 1345724 : agATAGTAAAAGCGTCGATGGCCTATCTTTCCGTTCTGAAAAGCATTATC : 1345846 vulgar: gi|350415230|ref|XP_003490573.1| 329 392 . KQ414782.1 1345579 1345846 + 159 M 47 141 5 0 2 I 0 74 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345580 1345846 159 + . gene_id 1 ; sequence gi|350415230|ref|XP_003490573.1| ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345580 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345580 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345846 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345846 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345580 1345846 159 + . alignment_id 1 ; Query gi|350415230|ref|XP_003490573.1| ; Align 1345580 330 141 ; Align 1345799 377 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350415227|ref|XP_003490572.1| PREDICTED: odorant receptor 7a-like [Bombus impatiens] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 329 -> 392 Target range: 1345579 -> 1345846 330 : AsnSerValTyrPheCysSerTrpTyrAspIleProLysCysValAlaLysAspIl : 348 .!.:!! !|||||| !!!:!|||||||||:!!||| ! !.!!::!...:! GlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLysTyrThrArgSerLe 1345580 : CAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAAATACACGCGATCGTT : 1345634 349 : eIleTyrValIleMetArgThrGlnAspProValPheLeuLysAlaGlyLysPheP : 367 !|||!:! !||| |||:!!||| ! ||| !!:!|||! !||||||||||||! uIlePheCysIleAlaArgSerGlnLysProSerTyrLeuThrAlaGlyLysPheT 1345635 : AATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAGCTGGCAAGTTCT : 1345691 368 : heValValAsnMetGluThrTyrMetSer >>>> Target Intron 1 >>>> : 377 :!||| !!::::!:||||||!:! ! ! 78 bp yrValPheSerLeuGluThrPheGlyIle++ 1345692 : ACGTGTTCTCGTTAGAAACATTCGGCATCgt......................... : 1345723 378 : IleIleLysThrSerMetSerTyrLeuSerValLeuArgValMetVal : 392 |||:!!|||.!!||||||:!!|||||||||||||||!:! !!!::!! ++IleValLysAlaSerMetAlaTyrLeuSerValLeuLysSerIleIle 1345724 : agATAGTAAAAGCGTCGATGGCCTATCTTTCCGTTCTGAAAAGCATTATC : 1345846 vulgar: gi|350415227|ref|XP_003490572.1| 329 392 . KQ414782.1 1345579 1345846 + 152 M 47 141 5 0 2 I 0 74 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345580 1345846 152 + . gene_id 1 ; sequence gi|350415227|ref|XP_003490572.1| ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345580 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345580 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345846 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345846 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345580 1345846 152 + . alignment_id 1 ; Query gi|350415227|ref|XP_003490572.1| ; Align 1345580 330 141 ; Align 1345799 377 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 349 -> 394 Target range: 1345588 -> 1345723 350 : TyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValLeuVa : 368 |||.!.!:!.!.|||||| !|||||| !!||| !.!!! !..!|||:!!!!! TyrPheSerAsnTrpTyrAspLeuProAspLysTyrThrArgSerLeuIlePheCy 1345589 : TACTTCAGTAATTGGTACGATTTACCAGATAAATACACGCGATCGTTAATATTTTG : 1345643 369 : lIleSerArgSerSerMetValValLysIleThrAlaGlyLysPheIleGlnIleS : 387 !|||:!!||||||..!! ! ! ! ! :!!||||||||||||||| ! !.!!| sIleAlaArgSerGlnLysProSerTyrLeuThrAlaGlyLysPheTyrValPheS 1345644 : CATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAGCTGGCAAGTTCTACGTGTTCT : 1345700 388 : erIleThrThrPheGlyValVal : 394 ||:!! !|||||||||:!!||| erLeuGluThrPheGlyIleVal 1345701 : CGTTAGAAACATTCGGCATCGTG : 1345723 vulgar: gi|350422520|ref|XP_003493189.1| 349 394 . KQ414782.1 1345588 1345723 + 102 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345589 1345723 102 + . gene_id 1 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345589 1345723 . + . KQ414782.1 exonerate:protein2genome:local exon 1345589 1345723 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345589 1345723 102 + . alignment_id 1 ; Query gi|350422520|ref|XP_003493189.1| ; Align 1345589 350 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 338 -> 390 Target range: 1345567 -> 1345723 339 : GlnLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAsnLysVa : 357 ...:!!:!! !:!!!.! !|||.!.!:!||||||||| !!||||||:!!||| SerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLysTy 1345568 : TCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAAATA : 1345622 358 : lIleLeuAspLeuIleLeuIleIleAlaArgSerSerThrValValHisLeuThrA : 376 !! ! !...||||||!!! !||||||||||||..!! ! ! !:!!||||||| rThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuThrA 1345623 : CACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAG : 1345679 377 : laGlyLysPheIleGlnMetSerValTyrThrPheGlyAsnVal : 390 ||||||||||| ! !.!.|||:!! ! |||||||||! !||| laGlyLysPheTyrValPheSerLeuGluThrPheGlyIleVal 1345680 : CTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCGTG : 1345723 vulgar: gi|350422517|ref|XP_003493188.1| 338 390 . KQ414782.1 1345567 1345723 + 112 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345568 1345723 112 + . gene_id 1 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345568 1345723 . + . KQ414782.1 exonerate:protein2genome:local exon 1345568 1345723 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345568 1345723 112 + . alignment_id 1 ; Query gi|350422517|ref|XP_003493188.1| ; Align 1345568 339 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350415235|ref|XP_003490575.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 329 -> 392 Target range: 1345579 -> 1345846 330 : AspSerMetTyrPheCysAsnTrpTyrAspIleProLysSerValAlaLysAspIl : 348 .!.:!! |||||| !!||||||||||||:!!||| ! !.! !.!!::!...:! GlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLysTyrThrArgSerLe 1345580 : CAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAAATACACGCGATCGTT : 1345634 349 : eIleTyrValIleMetArgAlaGlnGluProValPheLeuArgAlaGlyGlnPheL : 367 !|||!:! !||| |||:!!|||:!!||| !!:!|||! !||||||:!!|||! uIlePheCysIleAlaArgSerGlnLysProSerTyrLeuThrAlaGlyLysPheT 1345635 : AATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAGCTGGCAAGTTCT : 1345691 368 : euValValAsnMetGluThrTyrThrSer >>>> Target Intron 1 >>>> : 377 !||| !!::::!:||||||!:! !! ! 78 bp yrValPheSerLeuGluThrPheGlyIle++ 1345692 : ACGTGTTCTCGTTAGAAACATTCGGCATCgt......................... : 1345723 378 : IleIleLysThrSerMetSerTyrLeuSerValLeuArgValMetVal : 392 |||:!!|||.!!||||||:!!|||||||||||||||!:! !!!::!! ++IleValLysAlaSerMetAlaTyrLeuSerValLeuLysSerIleIle 1345724 : agATAGTAAAAGCGTCGATGGCCTATCTTTCCGTTCTGAAAAGCATTATC : 1345846 vulgar: gi|350415235|ref|XP_003490575.1| 329 392 . KQ414782.1 1345579 1345846 + 155 M 47 141 5 0 2 I 0 74 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345580 1345846 155 + . gene_id 1 ; sequence gi|350415235|ref|XP_003490575.1| ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345580 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345580 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345846 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345846 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345580 1345846 155 + . alignment_id 1 ; Query gi|350415235|ref|XP_003490575.1| ; Align 1345580 330 141 ; Align 1345799 377 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350415138|ref|XP_003490544.1| PREDICTED: odorant receptor Or2 [Bombus impatiens] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 329 -> 392 Target range: 1345579 -> 1345846 330 : AspSerIleTyrSerCysSerTrpTyrAspIleProLysSerValThrLysAspIl : 348 .!.:!! !|||! ! !!!:!|||||||||:!!||| ! !.! !|||::!...:! GlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLysTyrThrArgSerLe 1345580 : CAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAAATACACGCGATCGTT : 1345634 349 : eIleTyrValIleMetArgAlaGlnAspProValTyrLeuLysAlaGlyLysPheP : 367 !|||!:! !||| |||:!!||| ! ||| !||||||! !||||||||||||! uIlePheCysIleAlaArgSerGlnLysProSerTyrLeuThrAlaGlyLysPheT 1345635 : AATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAGCTGGCAAGTTCT : 1345691 368 : heIleLeuAsnMetGluThrTyrMetSer >>>> Target Intron 1 >>>> : 377 :!:!:!!!::::!:||||||!:! ! ! 78 bp yrValPheSerLeuGluThrPheGlyIle++ 1345692 : ACGTGTTCTCGTTAGAAACATTCGGCATCgt......................... : 1345723 378 : IleIleLysThrSerMetSerTyrLeuSerValLeuArgValMetIle : 392 |||:!!|||.!!||||||:!!|||||||||||||||!:! !!!:||| ++IleValLysAlaSerMetAlaTyrLeuSerValLeuLysSerIleIle 1345724 : agATAGTAAAAGCGTCGATGGCCTATCTTTCCGTTCTGAAAAGCATTATC : 1345846 vulgar: gi|350415138|ref|XP_003490544.1| 329 392 . KQ414782.1 1345579 1345846 + 157 M 47 141 5 0 2 I 0 74 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345580 1345846 157 + . gene_id 1 ; sequence gi|350415138|ref|XP_003490544.1| ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345580 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345580 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345846 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345846 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345580 1345846 157 + . alignment_id 1 ; Query gi|350415138|ref|XP_003490544.1| ; Align 1345580 330 141 ; Align 1345799 377 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350415237|ref|XP_003490576.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 330 -> 399 Target range: 39965 -> 40250 331 : SerAsnGluIleAlaHisGlyValTyrAspSerProTrpTyrGlnProArgGlyHisVal : 350 |||!.!! !|||!.!!!...!!.!||||||!!! !||||||.!. !! ! ! ! ! SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 351 : AlaArgAspLeuMetMetIleIleAsnArgGlyHisArgSerTyrHisValThrAlaGly : 370 ||| !...|||:!:!!::!:||| !|||!.!!!. !|||!:!!!.:!!||||||||| AlaValSerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGly 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGA : 40083 371 : LysPheLeuSerMetAsnIlePheThrPheLysGlu >>>> Target Intron 1 > : 383 |||||| ! !!.!.::!:!! !|||!!.! 78 bp LysPheSerProPheSerLeuGluLeuPheAsnAla++ 40084 : AAATTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTgt...................... : 40124 384 : >>> IleLeuArgSerSerAlaSerTyrLeuSerValLeuLysValMetMetAsp : 399 :!!|||!:!!!!||||||.!!||||||||||||||| !!.!|||! ||| ++ValLeuLysThrSerAlaGlyTyrLeuSerValLeuLeuAlaMetLysAsp 40125 : ...agGTTTTAAAAACGTCTGCTGGATATCTTTCCGTGTTGCTAGCTATGAAAGAC : 40250 vulgar: gi|350415237|ref|XP_003490576.1| 330 399 . KQ414804.1 39965 40250 + 106 M 52 156 5 0 2 I 0 74 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40250 106 + . gene_id 1 ; sequence gi|350415237|ref|XP_003490576.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39966 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40250 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40250 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39966 40250 106 + . alignment_id 1 ; Query gi|350415237|ref|XP_003490576.1| ; Align 39966 331 156 ; Align 40200 383 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 116 -> 253 Target range: 36572 -> 36977 117 : IleGlnHisValGluLysAspTrpLysMetValGlnAspProAsnHisArgThrIleMet : 136 !!:...!!.:!! ! |||||| ! ! ! !!||| !! ||| MetSerGlnIlePheAspAspTrpAlaGluProIleProGluValAspArgHisThrMet 36573 : ATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACGATG : 36630 137 : LeuLysTyrAlaThrValSerArgLysLeuIleThrLeuCysAlaIlePheLeuTyrThr : 156 |||||| !|||! !:!!||||||! !:!! !! !:!!|||:!!|||.!. !|||..! LeuLysThrAlaLysIleSerArgMetIleSerIleValCysSerIleLeuThrTyrVal 36631 : CTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTCTGTTCTATCCTGACGTATGTC : 36690 157 : GlyGlyMetSerTyrHisThrValMetGlnPheLeuSerLysGluArgAsnLysLysAsn : 176 !! !:!!:!!!:! :!! :!:|||.!!! !|||!.. !!:!|||! ..!.!. MetValLeuAlaPheLeuSer---LeuGlnIleTrpSerSerMetGlnAsnThrSerGlu 36691 : ATGGTTTTGGCCTTCTTGTCA---CTTCAAATTTGGAGCAGCATGCAAAACACCTCGGAG : 36747 177 : TyrThrPheArgProLeuThrTyrProGlyTyrAspSerPheLeuAspThrGlnSerSer : 196 !:!!.! ! !! !||| ! !|||!.! ! !!!:! ||||||.!.!.!||| PheAsnValGlyGlyLeuLeuIleProAlaThrPheProTyr---AspThrAsnLysSer 36748 : TTCAACGTAGGAGGACTACTTATCCCGGCCACATTTCCATAC---GACACGAATAAAAGT : 36804 197 : ProThrTyrGluValValPhePheLeuGlnCysPheAlaAlaMetIleMetTyrSerVal : 216 |||!.!||||||:!!..!!::.!! !|||! ! ! !.!.!!:!!:!:! ! ! ! ProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCys 36805 : CCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGT : 36864 217 : ThrThrValAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGlyGlnIleGln : 236 !:!! ! ! !!!!!!!!!.!|||:!!.!!||| !|||||||||||||||:!! TyrSerCysPheAspThrPheValAlaValLeuValLeuHisIleCysGlyGlnLeuThr 36865 : TATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACT : 36924 237 : ValGlnIleAlaArgLeuHisAspLeuValGluAsnGluLysArgLysAsn : 253 |||! ! ! !|||.!.:!!|||!.!.!.!.. !! !!:! ! ||| ValLeuArgIleAlaLeuGluAsnLeuAlaAsnThrThrIleLysAspAsn 36925 : GTTCTCCGCATTGCCCTCGAGAATCTTGCTAACACGACAATAAAAGACAAC : 36977 vulgar: gi|350412763|ref|XP_003489754.1| 116 253 . KQ414804.1 36572 36977 + 109 M 47 141 G 1 0 M 26 78 G 1 0 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36573 36977 109 + . gene_id 1 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36573 36977 . + . KQ414804.1 exonerate:protein2genome:local exon 36573 36977 . + . insertions 0 ; deletions 2 KQ414804.1 exonerate:protein2genome:local similarity 36573 36977 109 + . alignment_id 1 ; Query gi|350412763|ref|XP_003489754.1| ; Align 36573 117 141 ; Align 36714 165 78 ; Align 36792 192 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 112 -> 251 Target range: 31122 -> 31539 113 : PheGluArgCysIleGlnHisValGluLysAspTrpLysMetValGlnAspProAsnHis : 132 |||:!!! ! !|||:!! ! !! ! ! |||||||||! !::! ...... PheLysProValIleLysSerPheTyrAspAspTrpLysThrSerArgThrLysGluGlu 31123 : tTCAAGCCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACcaaggaggag : 31180 133 : ArgThrIleMetLeuLysTyrAlaThrValSerArgLysLeuIleThrLeuCysAlaIle : 152 ::: !||||||||| |||! ! !!:!!!:!:!!:!! !! !! !|||:!!:!! LysGluThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIleTrpCysSerVal 31181 : aaggagacCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGGTGCTCAGTA : 31240 153 : PheLeuTyrThrGlyGlyMetSerTyrHisThrValMetGlnPheLeuSerLysGluArg : 172 !!. !! ||| !! !! !|||! !:!:!! !!:::!!! ! ! :!!! ! LeuThrLeuThrMetValThrValTyrLeuSerLeuArgAlaTrpIleIleTyrGlnLeu 31241 : TTAACCTTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATCTACCAGCTT : 31300 173 : AsnLysLysAsnTyr<->ThrPheArgProLeuThrTyrProGlyTyrAspSerPheLeu : 191 :!!!:! !||| ! ! !|||! !||| !|||||||||||| ! !!||| AspArgAlaAsnGlnLysGlnAspArgLeuLeuLeuTyrProGlyTyrPheProPhe--- 31301 : GATAGGGCAAACCAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTATTTTCCCTTC--- : 31360 192 : AspThrGlnSerSerProThrTyrGluValValPhePheLeuGlnCysPheAlaAlaMet : 211 |||! !!:: !!! ! !..! ! !..! !||| !||| .!!|||||| AspIleArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeuAlaAlaTyr 31361 : GATATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCAGCGTAT : 31417 212 : IleMetTyrSerValThrThrValAlaTyrSerLeuAlaAlaIlePheValThrHisIle : 231 ! !! ! ! !|||..!!.! !!!!!!!! !|||!!:.!.:!!! !|||||| SerAlaValIleSerTyrThrThrValAspThrPheIleAlaMetLeuIleMetHisIle 31418 : TCCGCTGTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATAATGCACATA : 31477 232 : CysGlyGlnIleGlnValGlnIleAlaArgLeuHisAspLeuValGluAsnGluLysArg : 251 |||||||||.!!:!!:!!! !! ! !!:!|||!.. |||:!!!!::!!||||||!:! CysGlyGlnPheGluIleLeuArgGlnLysLeuArgArgLeuMetAspAspGluLysLys 31478 : TGCGGACAATTTGAGATACTGAGACAGAAATTACGAAGGCTGATGGATGACGAGAAGAAG : 31537 vulgar: gi|350412763|ref|XP_003489754.1| 112 251 . KQ414804.1 31122 31539 + 107 M 65 195 G 0 3 M 13 39 G 1 0 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31123 31539 107 + . gene_id 2 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31123 31539 . + . KQ414804.1 exonerate:protein2genome:local exon 31123 31539 . + . insertions 3 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 31123 31539 107 + . alignment_id 2 ; Query gi|350412763|ref|XP_003489754.1| ; Align 31123 113 195 ; Align 31321 178 39 ; Align 31360 192 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 311 -> 399 Target range: 33840 -> 34558 312 : IleAlaIleLeuThrTyrValThrLeuLeuIleSerPheThrPheAsnIlePheIlePhe : 331 :!: !:!:||| !!:!||| !!!!:!! !! !.!! ! ! :!!|||!:!|||!:! ValGlnLeuLeuPhePheValLeuPheValCysPheIleLeuValHisIleTyrIleTyr 33841 : GTGCAATTGCTTTTCTTCGTGCTGTTCGTATGCTTCATCCTTGTACACATCTACATTTAT : 33898 332 : CysTyrIleGlyGluIleLeuThrGluGln >>>> Target Intron 1 >>>> C : 342 |||||||||||||||!!:||| ! !!!. 454 bp CysTyrIleGlyGluMetLeuLeuThrHis+- ++S 33899 : TGTTACATAGGAGAGATGCTACTCACACATgc.........................agA : 34385 343 : ysSerGlnIleGlyIleThrSerTyrGluIleGluTrpTyrGlnLeuProAlaLysLysA : 362 !!!!!:!!!!:.!!! !:!!:!!|||||| !.!.||||||.!.:!! !! !! !:!!| erArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProProGluA 34386 : GCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCAGAAG : 34445 363 : laTyrAspLeuIleLeuLeuIleSerIleSerHisTyrProProLysLeuThrAlaGlyL : 382 || ! !|||:!!!!!:!!!!: !! !!!! ! !|||! ! ||||||||||||| laLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAlaGlyL 34446 : CCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCAGGAA : 34505 383 : ysIleIleGluLeuSerLeuAsnThrPheSerSerValAlaLysSerSerVal : 399 ||.!!! ! !!!|||:!!.!.! !||||||!!!|||::! :::::: ysPheSerThrPheSerMetGluMetPheSerThrValSerProIleAsnIle 34506 : AATTCAGTACCTTCTCCATGGAAATGTTCAGTACTGTAAGCccgataaatatt : 34558 vulgar: gi|350412763|ref|XP_003489754.1| 311 399 . KQ414804.1 33840 34558 + 107 M 30 90 5 0 2 I 0 450 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33841 34558 107 + . gene_id 3 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33841 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33841 33930 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 1 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34558 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34558 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33841 34558 107 + . alignment_id 3 ; Query gi|350412763|ref|XP_003489754.1| ; Align 33841 312 90 ; Align 34385 342 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350415235|ref|XP_003490575.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 326 -> 391 Target range: 39971 -> 40244 327 : GlyIleGlyAspSerMetTyrPheCysAsnTrpTyrAspIleProLysSerValAlaLys : 346 |||||||||.!.||| ||| !|||||||||||||||:!!||| !!.! !||| GlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHisAlaVal 39972 : GGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCATGCTGTT : 40029 347 : AspIleIleTyrValIleMetArgAlaGlnGluProValPheLeuArgAlaGlyGlnPhe : 366 ...:!!:!! !|||||| |||||||||! ! !! !! :!!! !||||||:!!||| SerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGlyLysPhe 40030 : TCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGAAAATTC : 40089 367 : LeuValValAsnMetGluThrTyrThrSer >>>> Target Intron 1 >>>> I : 377 ! ! !!::!:!:||| !!:!!.!:!! 78 bp : SerProPheSerLeuGluLeuPheAsnAla++ ++V 40090 : AGTCCCTTTTCTCTCGAGCTGTTTAACGCTgt.........................agG : 40200 378 : leIleLysThrSerMetSerTyrLeuSerValLeuArgValMet : 391 !!:!!||||||||| .!!|||||||||||||||! !!.!||| alLeuLysThrSerAlaGlyTyrLeuSerValLeuLeuAlaMet 40201 : TTTTAAAAACGTCTGCTGGATATCTTTCCGTGTTGCTAGCTATG : 40244 vulgar: gi|350415235|ref|XP_003490575.1| 326 391 . KQ414804.1 39971 40244 + 139 M 50 150 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39972 40244 139 + . gene_id 1 ; sequence gi|350415235|ref|XP_003490575.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39972 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39972 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40244 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40244 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39972 40244 139 + . alignment_id 1 ; Query gi|350415235|ref|XP_003490575.1| ; Align 39972 327 150 ; Align 40200 377 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 328 -> 390 Target range: 39938 -> 40124 329 : TyrIleSerGluIleLeuThrGluGlnCysGlnLysValGlyGluValValTyrMetThr : 348 |||||| :::||| ... ! !:!!|||:!! !!.!||| ! TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 349 : AsnTrpTyrTyrLeuProAsnLysValIleLeuAspLeuIleLeuIleIleAlaArgSer : 368 ||||||||| !!|||||| ||| ! !:!!...|||:!!:!!:!:|||..!|||:!! AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 369 : SerThrValValHisLeuThrAlaGlyLysPheIleGlnMetSerValTyrThrPheGly : 388 ..!..! ! !!!!.:!!|||||||||||||||! !! .!.|||:!! ! !|||..! GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsn 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAAC : 40116 389 : AsnVal : 390 !||| AlaVal 40117 : GCTGTG : 40124 vulgar: gi|350422517|ref|XP_003493188.1| 328 390 . KQ414804.1 39938 40124 + 101 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40124 101 + . gene_id 1 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39939 40124 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40124 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40124 101 + . alignment_id 1 ; Query gi|350422517|ref|XP_003493188.1| ; Align 39939 329 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 323 -> 394 Target range: 51777 -> 52050 324 : MetValPheAsnIlePheIlePheCysTyrIleGlyGluIleValIleGluGln >>>> : 342 :!!:!!.!..!.:!!|||:!:!:!||||||:!:||||||! :!! !! :!! ValMetLeuGlnLeuPheLeuTyrCysTyrValGlyGluArgLeuSerValGlu++ 51778 : GTGATGCTACAATTATTCTTGTATTGTTACGTGGGTGAAAGGCTTTCCGTTGAGgt.... : 51834 343 : Target Intron 1 >>>> GlyGluArgValGlyLysLysValTyrMetThrGluT : 354 60 bp .!!! ..!:!!!.!!!. !!.!||| :!!|||| ++SerValGluIleAlaAsnAlaAlaTyrAspSerGluT 51835 : .....................agAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAAT : 51928 355 : rpTyrArgLeuProHisLysThrAlaLeuGlyLeuValLeuValIleSerArgSerSerM : 374 |||||!.!||| !!! |||!.!||| ! !|||:!!:!!:!!!!: !!|||:!!!!!: rpTyrAsnLeuSerProLysAsnAlaLysLeuLeuLeuIleIleMetArgArgAlaArgL 51929 : GGTACAATTTGTCTCCGAAAAATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGT : 51988 375 : etValValLysIleThrAlaGlyLysPheIleGlnIleSerIleThrThrPheGlyValV : 394 !: !:!!:!!||||||||||||!:!||| ! .!!!!!:!:! ! !!:!..! !| euProLeuGlnIleThrAlaGlyArgPheAlaThrPheThrLeuMetLeuTyrSerGlnV 51989 : TACCTCTACAAATCACTGCAGGTAGATTTGCTACTTTCACTCTGATGCTGTATTCACAGG : 52048 395 : al : 394 || al 52049 : Ta : 52050 vulgar: gi|350422520|ref|XP_003493189.1| 323 394 . KQ414804.1 51777 52050 + 117 M 18 54 5 0 2 I 0 56 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51778 52050 117 + . gene_id 1 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51778 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51778 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52050 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52050 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51778 52050 117 + . alignment_id 1 ; Query gi|350422520|ref|XP_003493189.1| ; Align 51778 324 54 ; Align 51892 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 344 -> 394 Target range: 39974 -> 40124 345 : ValGlyLysLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGly : 364 :!!|||:!!...!.!||| !.!.|||||| !||||||! ||| !|||:!!..! IleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHisAlaValSer 39975 : ATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCATGCTGTTTCG : 40032 365 : LeuValLeuValIleSerArgSerSerMetValValLysIleThrAlaGlyLysPheIle : 384 ||||||:!!||||||!!!|||:!!..!:!! ! !!:!!||||||||||||||||||! ! LeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGlyLysPheSer 40033 : TTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGT : 40092 385 : GlnIleSerIleThrThrPheGlyValVal : 394 ! .!!|||:!! ! !|||..!!.!||| ProPheSerLeuGluLeuPheAsnAlaVal 40093 : CCCTTTTCTCTCGAGCTGTTTAACGCTGTG : 40124 vulgar: gi|350422520|ref|XP_003493189.1| 344 394 . KQ414804.1 39974 40124 + 109 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39975 40124 109 + . gene_id 2 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39975 40124 . + . KQ414804.1 exonerate:protein2genome:local exon 39975 40124 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39975 40124 109 + . alignment_id 2 ; Query gi|350422520|ref|XP_003493189.1| ; Align 39975 345 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 328 -> 390 Target range: 39938 -> 40124 329 : TyrIleGlyGluThrLeuThrGluGlnSerArgLysValGlyAspValValTyrMetAla : 348 |||||| ::: ... |||! ! !:!!|||.!. !!.!||| ..! TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 349 : AsnTrpTyrTyrLeuThrGluLysArgIleLeuGluLeuIleLeuIleIleMetArgSer : 368 ||||||||| !!||| !! !|||!.! !:!!..!|||:!!:!!:!:||| |||:!! AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 369 : SerValValValGluIleThrAlaGlyLysIleIleHisMetSerIleGlnThrPheSer : 388 ..!||| ! !!:!!|||||||||||||||.!!! !! !.!.|||:!!:!! !|||!:! GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsn 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAAC : 40116 389 : ThrVal : 390 .!!||| AlaVal 40117 : GCTGTG : 40124 vulgar: gi|350422503|ref|XP_003493183.1| 328 390 . KQ414804.1 39938 40124 + 102 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40124 102 + . gene_id 1 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39939 40124 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40124 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40124 102 + . alignment_id 1 ; Query gi|350422503|ref|XP_003493183.1| ; Align 39939 329 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350415157|ref|XP_003490551.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 326 -> 391 Target range: 39971 -> 40244 327 : GlyIleSerAspSerIleTyrPheCysAsnTrpTyrAspIleSerLysSerMetAlaLys : 346 ||||||.!!.!.||| !||| !|||||||||||||||:!! !! !!.! ||| GlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHisAlaVal 39972 : GGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCATGCTGTT : 40029 347 : AspIleIleTyrValIleMetArgAlaGlnTyrProValPheLeuLysAlaGlyAsnPhe : 366 ...:!!:!! !|||||| ||||||||| !! !! :!!! ||||||!!.||| SerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGlyLysPhe 40030 : TCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGAAAATTC : 40089 367 : PheIleValAsnMetGluThrTyrMetSer >>>> Target Intron 1 >>>> I : 377 ! ! !!::!:!:||| !!:!! :!! 78 bp : SerProPheSerLeuGluLeuPheAsnAla++ ++V 40090 : AGTCCCTTTTCTCTCGAGCTGTTTAACGCTgt.........................agG : 40200 378 : leLeuLysThrSerMetSerTyrLeuSerValLeuArgValMet : 391 !!|||||||||||| .!!|||||||||||||||! !!.!||| alLeuLysThrSerAlaGlyTyrLeuSerValLeuLeuAlaMet 40201 : TTTTAAAAACGTCTGCTGGATATCTTTCCGTGTTGCTAGCTATG : 40244 vulgar: gi|350415157|ref|XP_003490551.1| 326 391 . KQ414804.1 39971 40244 + 125 M 50 150 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39972 40244 125 + . gene_id 1 ; sequence gi|350415157|ref|XP_003490551.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39972 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39972 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40244 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40244 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39972 40244 125 + . alignment_id 1 ; Query gi|350415157|ref|XP_003490551.1| ; Align 39972 327 150 ; Align 40200 377 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 291 -> 393 Target range: 39830 -> 40136 292 : MetProCysTyrTyrIleLeuAlaGluTrpSerGluHisAsnValGlnAlaMetIleIle : 311 ::: ||||||::: ...! ..!... ||| !:!! !... ||| LeuSerCysTyrPheCysAsnLeuHisSerAspSerLeuAsnSerGluLeuPheHisIle 39831 : ttaagttgttatttttgtaatttacacTCAGACTCCTTGAACAGTGAACTTTtccatatt : 39888 312 : TyrValMetValPheLeuSerMetThrPheAsnIlePheLeuIleCysTyrIleGlyGlu : 331 ::::::::: !! ! ! !::!! !.!!!!!! ! |||||| ::: LeuIleLeuLeu***AsnTyrSerGluProSerSerIlePheAsnThrTyrIleCysLys 39889 : ttaatattactctGAAATTACTCTGAACCTTCCAGTATTTTCAATACttacatttgcaaa : 39948 332 : ValLeuLysGluGlnCysGlnLysValGlyAspMetValTyrMetThrAsnTrpTyrGln : 351 ::: ... ! !:!!|||.!. !.!||| !|||||||||.!. IleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAsp 39949 : atttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGAT : 40008 352 : LeuProAspLysAsnIleLeuSerIleIleMetIleIleSerArgSerHisMetGluVal : 371 |||||| |||:!! !:!!|||:!!:!!!!::!:|||!!!|||:!!!!.:!!... !! LeuProProLysHisAlaValSerLeuValIleValIleCysArgAlaGlnValSerPhe 40009 : TTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTT : 40068 372 : LysIleThrAlaGlyLysIleIleThrMetSerValTyrThrPheGlyAsnIleIleLys : 391 :!!|||||||||||||||.!!! ! !!.!.|||:!! ! !|||..! !:!:! !::! GlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsnAlaValSerArg 40069 : CAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTGTGAGTCGA : 40128 392 : ThrVal : 393 ! !:!! IleIle 40129 : ATTATC : 40136 vulgar: gi|350412806|ref|XP_003489770.1| 291 393 . KQ414804.1 39830 40136 + 106 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39831 40136 106 + . gene_id 1 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39831 40136 . + . KQ414804.1 exonerate:protein2genome:local exon 39831 40136 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39831 40136 106 + . alignment_id 1 ; Query gi|350412806|ref|XP_003489770.1| ; Align 39831 292 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350415235|ref|XP_003490575.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 303 -> 388 Target range: 4213 -> 4483 304 : LeuThrAlaLeuMetValGlnLeuPheAlaTyrSerTyrValGlyGluTyrLeuArgArgGl : 324 ||||||!.!! !:!! !||||||!!. !!:!!!!||| ! !!!!:! !|||! !|||:! LeuThrGlyCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGl 4214 : CTAACGGGATGCCTGTGCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGA : 4274 325 : nMetGluGlyIleGlyAspSerMetTyrPheCysAsnTrpTyrAspIlePro<-><-><->< : 342 !! !..!:!:!.!:!!:!!!!:||| !|||:::||| ! !!:!:||| uSerLeuAsnValAlaAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgS 4275 : AAGCTTGAACGTGGCCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGAT : 4337 343 : -><->LysSerValAlaLysAspIleIleTyrValIleMetArgAlaGlnGluProValPhe : 360 ::!! !:!! !||||||:!:! !!:!|||||| |||:!!::!! !||| !! ! erGlyArgMetLeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCys 4338 : CTGGGCGAATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGT : 4397 361 : LeuArgAlaGlyGlnPheLeuValValAsnMetGluThrTyrThrSerIleIleLysThrSe : 381 |||! !||| !! !|||!!! !|||::::!!|||||||||||||||:!!||| ! :!!!! LeuThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSerValIleHisSerTh 4398 : CTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGGTAATTCATTCAAC : 4460 382 : rMetSerTyrLeuSerValLeu : 388 !.!. ! :!!|||:!!||| rPheHisThrIleSerMetLeu 4461 : ATTTCACACGATATCGATGTTA : 4483 vulgar: gi|350415235|ref|XP_003490575.1| 303 388 . KQ414828.1 4213 4483 + 100 M 38 114 G 0 15 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 4214 4483 100 + . gene_id 1 ; sequence gi|350415235|ref|XP_003490575.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 4214 4483 . + . KQ414828.1 exonerate:protein2genome:local exon 4214 4483 . + . insertions 15 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 4214 4483 100 + . alignment_id 1 ; Query gi|350415235|ref|XP_003490575.1| ; Align 4214 304 114 ; Align 4343 342 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 840 Query range: 10 -> 298 Target range: 274362 -> 275306 11 : LysTyrGlyAsnLeuGlyGluTyrSerValGlnLeuSerArgTrpTyrLeuArgProM : 30 !!.!:!! !!:!|||.!!!!:||||||:!!||||||!:!||||||!:!|||!:!|||! AsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 274363 : AATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTA : 274420 31 : etGlyAlaTrpProAsnSerProSerThrThrArgArgGluLysIleLeuAlaGlnIl : 49 !:|||||||||||| :!! !! !!||||||!:! !|||::!||||||:!!!!.:: leGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLeuSerHisLe 274421 : TAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCt : 274477 50 : eSerIleValIleCysTrpCysIleValLeuPheThrIleValProGlyPheLeuHis : 68 : ||| :::|||:::|||.!!:!!|||! !|||:!!:!!|||.!!.!.!!!||| uLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIlePheHis 274478 : tttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCAC : 274534 69 : IleIleLeuValLysGluAspIleTyrLeuLysLeuLysThrLeuGlyProLeuSerH : 88 |||||||||||| ! |||..!:!!:!!|||||||||||| !||||||||||||.!!| IleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyH 274535 : ATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTC : 274594 89 : isTrpCysValAspGlyPheAsnTyrAlaValLeuLeuLeuArgGlnGluAspIleAs : 107 |||||! !:!!! |||.!!||||||.!!..!||||||||||||...:!!!!:|||.. isTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleAr 274595 : ACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACG : 274651 108 : nTyrCysIleGluArgValArgSerAspTrpLysMetIleThrArgValGlnAspArg : 126 ! !|||:!:|||!.!:!!!:!!!!||||||!:!!!::!:|||||| !:!!|||!:! gGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAspGln 274652 : CGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAA : 274708 127 : TyrGluMetTrpLysAsnAlaLysLeuGlyArgTyrValAlaGlyPheCysAlaGlyP : 146 ! ! !|||! !||||||||||||:!!||||||||||||||| !|||||||||!.!| GlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaP 274709 : CAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGT : 274768 147 : heMetGlnGlyThrMetIleTyrThrCysValValLeuGlyAlaPheArgArgThrIl : 165 |||||||| !! !:!::!!! ! !||||||:!! !!.! ! !! !!:!|||:! heMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGlnThrVa 274769 : TCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGT : 274825 166 : eLysValGlyAsnGluThrMetAspIleTyrThrLeuProCysProAlaTyrLys<-> : 184 !:!!|||||||||||||||! !:!::!!! !||||||||| !||||||||| lGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLysLys 274826 : TCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAG : 274882 185 : <->PheAlaValGlnThrAsnProThrHisAspIleIleLeuGlyThrGlnPheLeuS : 202 !!||||||.!.|||!:!||||||:!!!!:|||:!!|||!.!:!!||||||:!!| IleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnPheValS 274883 : ATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGT : 274942 203 : erAlaLeuValValSerSerGlyAlaAlaGlySerPheSerLeuAlaThrValPheAl : 221 ||!.!!!!:!!|||!:!|||.!!|||!.!|||:!!||||||||||||.!!|||||||| erGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAl 274943 : CGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGC : 274999 222 : aSerHisAlaLeuGlyGlnLeuAsnIleMetValThrTrpValAspGluPheThrAsn : 240 |:!!||||||! !|||||||||!:!:!::!!:!!! !|||:!! !||||||..!||| aAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheValAsn 275000 : GGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAAT : 275056 241 : GlnThrLysGlnGlnAsnLysGlnAlaGlnIleAsnLysIleGlyValIleValGluH : 260 !!.:!!!:!.!.|||||||||...... ...::!:!!|||||||||:!!||||||| HisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValValValGluH 275057 : CATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAAC : 275116 261 : isHisLeuArgValLeu{Se} >>>> Target Intron 1 >>>> {r}LeuIl : 268 |||||||||||||||||{||} 74 bp {|}!!!|| isHisLeuArgValLeu{Se}++ ++{r}PheIl 275117 : ATCATCTGAGGGTACTC{AG}gt.........................ag{T}TTCAT : 275214 269 : eAlaArgIleGluArgIleMetSerProIleCysPheMetGluMetPheLysCysMet : 287 ||||||||||||| !:!:|||!:!! !|||||||||||||||:!!|||||||||! eAlaArgIleGluAspValMetAsnArgIleCysPheMetGluLeuPheLysCysThr 275215 : AGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAATTGTTCAAGTGTACT : 275271 288 : LeuGlyMetCysMetProCysTyrTyrIleLeu : 298 |||! !|||||||||! ! !!|||||||||||| LeuAspMetCysMetLeuGlyTyrTyrIleLeu 275272 : CTGGATATGTGCATGCTTGGCTATTACATTCTC : 275306 vulgar: gi|350412806|ref|XP_003489770.1| 10 298 . KQ414889.1 274362 275306 + 840 M 173 519 G 0 6 M 82 246 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274363 275306 840 + . gene_id 1 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274363 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274363 275135 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274363 275306 840 + . alignment_id 1 ; Query gi|350412806|ref|XP_003489770.1| ; Align 274363 11 519 ; Align 274888 184 246 ; Align 275211 267 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 839 Query range: 0 -> 366 Target range: 259721 -> 262015 1 : MetAlaAspGluLeuValAlaAlaLysLysLysTyrGlyAsnLeuGlyGluTyrSerV : 20 |||.!!:!!:!!! !||| !!.!:!!! !!..!:! !!:!! !.!!!!:||||||: MetThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerL 259722 : ATGACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCC : 259779 21 : alGlnLeuSerArgTrpTyrLeuArgProMetGlyAlaTrpProAsnSerProSerTh : 39 !!|||!!!!:!||||||!:!|||!:!|||!!:|||||||||||| !||| !!||||| euGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 259780 : TCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCAC : 259836 40 : rThrArgArgGluLysIleLeuAlaGlnIleSerIleValIleCysTrpCysIleVal : 58 |||||||! !|||||||||:!!:!! ||| !||| !!||||||!:: !!! !:!! rThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIle 259837 : GACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATA : 259893 59 : LeuPheThrIleValProGlyPheLeuHisIleIleLeuValLysGluAspIleTyrL : 78 ||| !!|||:!::!!||| !! ! ||||||!!::!!|||! !||||||..!:!:|||: LeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrM 259894 : CTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACA : 259953 79 : euLysLeuLysThrLeuGlyProLeuSerHisTrpCysValAspGlyPheAsnTyrAl : 97 !!||| !|||..!||||||||||||!!!||||||! !|||! ! !!.!!||||||.! etLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrTh 259954 : TGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACAC : 260010 98 : aValLeuLeuLeuArgGlnGluAspIleAsnTyrCysIleGluArgValArgSerAsp : 116 !..!|||||||||||| ..!|||||| ! !|||:!:|||!.!|||..!!:!||| rThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAsp 260011 : AACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGAT : 260067 117 : TrpLysMetIleThrArgValGlnAspArgTyrGluMetTrpLysAsnAlaLysLeuG : 136 |||!:!!!:|||||||||! !:!!|||!:! !!! !|||! !!:! !!||||||!!!| TrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheG 260068 : TGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCG : 260127 137 : lyArgTyrValAlaGlyPheCysAlaGlyPheMetGlnGlyThrMetIleTyrThrCy : 155 ||||||||||||||!.!! !||||||!.!|||:!!|||||| !:!::!:! ! !|| lyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCy 260128 : GCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTG : 260184 156 : sValValLeuGlyAlaPheArgArgThrIleLysValGlyAsnGluThrMetAspIle : 174 |:!!||| !! ! ! !! !..!..!|||:!!|||||||||||||||! ! !:!! sLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal 260185 : TTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTT : 260241 175 : TyrThrLeuProCysProAlaTyrLysPheAlaValGlnThrAsn<-><->ProThrH : 192 :!! !||||||||| !!!.!|||||| !:!!.!...!||| |||! !: HisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetA 260242 : CATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGA : 260301 193 : isAspIleIleLeuGlyThrGlnPheLeuSerAlaLeuValValSerSerGlyAlaAl : 211 !!!!:|||:!!|||! !..!||||||:!!|||!.!!!!:!!|||!:!|||.!!.!!!. snGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrVa 260302 : ACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGT : 260358 212 : aGlySerPheSerLeuAlaThrValPheAlaSerHisAlaLeuGlyGlnLeuAsnIle : 230 !|||! !||||||||||||.!!|||.!..!!:!!||||||! !||||||||||||:!: lGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnVal 260359 : TGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTG : 260415 231 : MetValThrTrpValAspGluPheThrAsnGlnThrLysGlnGlnAsnLysGlnAlaG : 250 :!::!! !|||:!! ||||||..!:!!:!!:!!!:!.!.::!!!.|||:!!|||! LeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaP 260416 : CTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTC : 260475 251 : lnIleAsnLysIleGlyValIleValGluHisHisLeuArgValLeu{Se} >>>> : 266 .!!!!.:!!||||||||||||||||||||||||||||||!.!|||{!!} roPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeu{Th}++ 260476 : CTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC{AC}gt..... : 260527 267 : Target Intron 1 >>>> {r}LeuIleAlaArgIleGlu<->ArgIleMetSer : 276 1103 bp {!}||| ! ! !:!!||| |||! ...!!! ++{r}LeuTyrArgAlaLeuGlu***ArgArgGlnArg 260528 : ....................ag{T}TTGTATCGGGCCTTAGAATAACGCAGGCAAAGG : 261659 277 : ProIleCysPheMetGluMetPheLysCysMetLeuGlyMetCysMetProCysTyr< : 296 |||! !! !!:! ! ! !:! ! |||! ! !! !!!: !.!. ||| ProThrPheTyrAspTyrSerTyrAspCysAsnCysValIleIlePhePhe***TyrP 261660 : CCAACATTTTACGATTACAGTTACGATTGCAATTGTGTAATAATCTTTTTctgatatt : 261719 297 : ->TyrIleLeuAlaGluTrpSerGluHisAsnValGlnAlaMetIleIleTyrValMe : 314 ::::::||| ||||||:!!|||!!.:!!:!!||| !:!! !! ||| !!|| hePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheMe 261720 : tctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCAT : 261776 315 : tValPheLeuSerMetThrPheAsnIlePheLeuIleCysTyrIleGlyGluValLeu : 333 |:!!.!.:!!:!!!!: !||||||:!!|||:!!||||||||||||||||||:!!||| tMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLeu 261777 : GATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACTA : 261833 334 : LysGluGln >>>> Target Intron 2 >>>> CysGlnLysValGlyAspMe : 343 ! !|||||| 81 bp |||..!||||||||||||:! ThrGluGln++ ++CysSerLysValGlyAspVa 261834 : ACGGAACAGgt.........................agTGCTCGAAAGTTGGTGACGT : 261944 344 : tValTyrMetThrAsnTrpTyrGlnLeuProAspLysAsnIleLeuSerIleIleMet : 362 :||||||||||||||||||||| ! ||||||||||||!:!||||||..!:!:|||:!! lValTyrMetThrAsnTrpTyrTyrLeuProAspLysSerIleLeuAspLeuIleLeu 261945 : TGTTTACATGACAAACTGGTATTATTTACCTGATAAAAGTATCCTTGATTTGATTTTG : 262001 363 : IleIleSerArg : 366 ||||||:!!||| IleIleAlaArg 262002 : ATCATTGCACGA : 262015 vulgar: gi|350412806|ref|XP_003489770.1| 0 366 . KQ414889.1 259721 262015 + 839 M 189 567 G 0 6 M 76 228 S 0 2 5 0 2 I 0 1099 3 0 2 S 1 1 M 6 18 G 0 3 M 23 69 G 0 3 M 41 123 5 0 2 I 0 77 3 0 2 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259722 262015 839 + . gene_id 2 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259722 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259722 260524 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 261627 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261626 261627 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261628 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261628 261844 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262015 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262015 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259722 262015 839 + . alignment_id 2 ; Query gi|350412806|ref|XP_003489770.1| ; Align 259722 1 567 ; Align 260295 190 228 ; Align 261629 267 18 ; Align 261650 273 69 ; Align 261722 296 123 ; Align 261926 337 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 837 Query range: 0 -> 389 Target range: 256601 -> 258624 1 : MetAlaAspGluLeuValAlaAlaLysLysLysTyrGlyAsnLeuGlyGluTyrSerV : 20 |||.!!:!!|||!!!!.!!.!!.!|||! !!!.!:! !!:!! !.!!!!:||||||: MetThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerL 256602 : ATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTC : 256659 21 : alGlnLeuSerArgTrpTyrLeuArgProMetGlyAlaTrpProAsnSerProSerTh : 39 !!||||||!:!||||||!:!|||!:!|||!!:|||||||||||| !||| !!||||| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 256660 : TCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCAC : 256716 40 : rThrArgArgGluLysIleLeuAlaGlnIleSerIleValIleCysTrpCysIleVal : 58 ||||! !! !|||::!! !:!!:!! :!!! !! !:!!:!!|||!:: !! !:!! rThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIle 256717 : TACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATA : 256773 59 : LeuPheThrIleValProGlyPheLeuHisIleIleLeuValLysGluAspIleTyrL : 78 |||||||||:!::!!||| !!!!.||||||:!!.!!|||! ! ! !!:..!.!!|||: LeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrM 256774 : TTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAca : 256833 79 : euLysLeuLysThrLeuGlyProLeuSerHisTrpCysValAspGlyPheAsnTyrAl : 97 ::|||:::|||......||||||:!!||||||||| !:!!..! !! !||||||.! etLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrTh 256834 : tgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACAC : 256890 98 : aValLeuLeuLeuArgGlnGluAspIleAsnTyrCysIleGluArgValArgSerAsp : 116 !:!!|||||||||!:! !:!!||||||..!||||||:!!|||!.!:!!..!!!!||| rLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAsp 256891 : GTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGAT : 256947 117 : TrpLysMetIleThrArgValGlnAspArgTyrGluMetTrpLysAsnAlaLysLeuG : 136 |||!:!|||:!:! !|||! !:!!|||!:! ! ! !||| !|||||||||!:!!!!| TrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheG 256948 : TGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCG : 257007 137 : lyArgTyrValAlaGlyPheCysAlaGlyPheMetGlnGlyThrMetIleTyrThrCy : 155 |||||||||||||| !|||||||||!.!.!!||||||.!! !:::... lyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePh 257008 : GTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttctt : 257064 156 : sValValLeuGlyAlaPheArgArgThrIleLysValGlyAsnGluThrMetAspIle : 174 ||| !! !!.! ! !! !..!! !||| ! |||||||||||||||! ! !:!: eValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleVal 257065 : cgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTG : 257121 175 : TyrThrLeuProCysProAlaTyrLys<-><->PheAlaValGlnThrAsnProThrH : 192 ..!|||||| ! !!!.!|||||| !!. !|||.!. !!:!||||||: ArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrA 257122 : CGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGA : 257181 193 : isAspIleIleLeuGlyThrGlnPheLeuSerAlaLeuValValSerSerGlyAlaAl : 211 !!!!:|||:!::!! !! !||| !! !|||:!!:!!:!!!.!!!!!!!.!!.!!!. snGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrVa 257182 : ACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGT : 257238 212 : aGlySerPheSerLeuAlaThrValPheAlaSerHisAlaLeuGlyGlnLeuAsnIle : 230 !.!!! !||||||||||||.!!|||||||||!!!||||||! !|||||||||!.!:!: lSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrVal 257239 : TAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTG : 257295 231 : MetValThrTrpValAspGluPheThrAsnGlnThrLysGlnGlnAsnLysGlnAlaG : 250 :!::!!:!!|||:!! ||||||..!|||:!!:!!!:!.!.!::...||| LeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheP 257296 : CTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttc : 257355 251 : lnIleAsnLysIleGlyValIleValGluHisHisLeuArgValLeu{Se} >>>> : 266 ..!!!.:!!||||||||||||||||||||||||||||||||||||{||} roPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Se}++ 257356 : ctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt..... : 257407 267 : Target Intron 1 >>>> {r}LeuIleAlaArgIleGluArgIleMetSerPro : 277 756 bp {|}! !:!: ! !:!! !!:! !:!::!! !! -+{r}HisValArgTyrValProLysProValAlaThr 257408 : ....................cg{C}CACGTGCGTTATGTACCGAAACCTGTTGCAACA : 258192 278 : IleCysPheMetGluMetPheLysCysMetLeuGlyMetCysMetProCysTyrTyrI : 297 ! !!! !!.! ..! .!.:!!! .!.! ! !! ::: ||||||:::: LysTrpLeuLysSerTyrLeuGln***PheSerTyrThrGlnLeuPheCysTyrPheL 258193 : AAATGGTTAAAATCGTACCTACAATAATTTTCCTATACACAGctattctgttattttt : 258252 298 : leLeu----AlaGluTrpSerGluHisAsnValGlnAlaMetIleIleTyrValMetV : 315 ::|||#### ||||||||| !!..::::::||| ::: ||| !!|||: euLeu####GlnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheMetI 258253 : tattattttcaggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTATGA : 258310 316 : alPheLeuSerMetThrPheAsnIlePheLeuIleCysTyrIleGlyGluValLeuLy : 334 !!.!!:!!|||::::::||||||||||||:::||||||||||||||||||:!!|||! leLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLeuTh 258311 : TACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATTAAC : 258367 335 : sGluGln >>>> Target Intron 2 >>>> CysGlnLysValGlyAspMetV : 344 !|||||| 90 bp |||:!!||||||||||||:!!| rGluGln++ ++CysLysLysValGlyAspValV 258368 : AGAACAGgt.........................agTGCAAGAAAGTTGGCGACGTGG : 258487 345 : alTyrMetThrAsnTrpTyrGlnLeuProAspLysAsnIleLeuSerIleIleMetIl : 363 |||||||||||:!!|||||| ! ||||||||||||!..||||||..!:!!|||:!!:! alTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLeuVa 258488 : TTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTTGGT : 258544 364 : eIleSerArgSerHisMetGluValLysIleThrAlaGlyLysIleIleThrMetSer : 382 !|||:!!|||||| !:!!! |||:!!|||||||||||||||...... |||||| lIleAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePheHisMetSer 258545 : AATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatGTCC : 258601 383 : ValTyrThrPheGlyAsnIle : 389 :!!|||||||||.!!:!!:!: IleTyrThrPheSerAspVal 258602 : ATTTACACATTCAGCGATGTG : 258624 vulgar: gi|350412806|ref|XP_003489770.1| 0 389 . KQ414889.1 256601 258624 + 837 M 183 549 G 0 6 M 82 246 S 0 2 5 0 2 I 0 752 3 0 2 S 1 1 M 32 96 F 0 4 M 38 114 5 0 2 I 0 86 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256602 258624 837 + . gene_id 3 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256602 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256602 257404 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 258160 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258159 258160 . + . intron_id 0 ; splice_site "CG" KQ414889.1 exonerate:protein2genome:local cds 258161 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258161 258375 . + . insertions 0 ; deletions 0 ; frameshifts 4 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256602 258624 837 + . alignment_id 3 ; Query gi|350412806|ref|XP_003489770.1| ; Align 256602 1 549 ; Align 257157 184 246 ; Align 258162 267 96 ; Align 258262 299 114 ; Align 258466 337 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 810 Query range: 0 -> 298 Target range: 266586 -> 267555 1 : MetAlaAspGluLeuValAlaAlaLysLysLysTyrGlyAsnLeuGlyGluTyrSerV : 20 ||||||:!!|||! !:!!!.! !:!! !!!. ..!!:!|||.!!!!:||||||: MetAlaAsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerL 266587 : ATGGCTAACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCC : 266644 21 : alGlnLeuSerArgTrpTyrLeuArgProMetGlyAlaTrpProAsnSerProSerTh : 39 !!||||||!:!||||||!:!|||!:!|||!!:|||||||||||| ! ! !! !|| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuTh 266645 : TGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCAC : 266701 40 : rThrArgArgGluLysIleLeuAlaGlnIleSerIleValIleCysTrpCysIleVal : 58 |:!!!:!! !|||::!|||:!!:!! ! !! !||||||||||||!::||| !:!! rSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIle 266702 : ATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATA : 266758 59 : LeuPheThrIleValProGlyPheLeuHisIleIleLeuValLysGluAspIleTyrL : 78 |||||||||:!!:!!||| !!!!.!!!|||:!!:!!|||! ! ! |||..!||| ! LeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgT 266759 : CTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTA : 266818 79 : euLysLeuLysThrLeuGlyProLeuSerHisTrpCysValAspGlyPheAsnTyrAl : 97 !|||:!!|||..!!!!||||||||||||||||||! !|||! |||.!!||||||.! hrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrTh 266819 : CGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACAC : 266875 98 : aValLeuLeuLeuArgGlnGluAspIleAsnTyrCysIleGluArgValArgSerAsp : 116 !..!||||||||||||...:!!!!:|||..! !|||:!!|||!.!:!!!:!!!!||| rThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAsp 266876 : CACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGAT : 266932 117 : TrpLysMetIleThrArgValGlnAspArgTyrGluMetTrpLysAsnAlaLysLeuG : 136 |||!:!!!::!:|||||| !:!!|||!:! ! ! !|||! !|||||||||!:!:!!| TrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleG 266933 : TGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCG : 266992 137 : lyArgTyrValAlaGlyPheCysAlaGlyPheMetGlnGlyThrMetIleTyrThrCy : 155 ||||||||:!!||| !|||||||||!.!||||||||| !! !:!::!! ! !|| lyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCy 266993 : GTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTG : 267049 156 : sValValLeuGlyAlaPheArgArgThrIleLysValGlyAsnGluThrMetAspIle : 174 ||||:!! !!.! ! !! !!:!|||:!::!!|||||||||||||||! ! !:!! sValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleVal 267050 : TGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTA : 267106 175 : TyrThrLeuProCysProAlaTyrLys<-><->PheAlaValGlnThrAsnProThrH : 192 :!! !||||||||| !!!.!|||||| .!!||||||.!.|||!:!||||||: HisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrA 267107 : CATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGA : 267166 193 : isAspIleIleLeuGlyThrGlnPheLeuSerAlaLeuValValSerSerGlyAlaAl : 211 !!!!:|||:!!|||! !:!!||||||:!!|||!.!!!!:!!|||!:!|||.!!!.!!. snGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValVa 267167 : ACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGT : 267223 212 : aGlySerPheSerLeuAlaThrValPheAlaSerHisAlaLeuGlyGlnLeuAsnIle : 230 !|||:!!||||||||||||.!!|||||||||:!!||||||! !|||||||||!:!:!: lGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerVal 267224 : CGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTG : 267280 231 : MetValThrTrpValAspGluPheThrAsnGlnThrLysGlnGlnAsnLysGlnAlaG : 250 :!!:!!! !|||:!! ! ||||||..!|||!:!:!!!:!.!....||||||.!.!.! LeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValC 267281 : CTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTT : 267340 251 : lnIleAsnLysIleGlyValIleValGluHisHisLeuArgValLeu{Se} >>>> : 266 .!!:!!||||||||||||:!!||||||||||||||||||||||||{||} ysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 267341 : GCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG}gt..... : 267392 267 : Target Intron 1 >>>> {r}LeuIleAlaArgIleGluArgIleMetSerPro : 277 69 bp {|}!!!|||||||||||||||!!!:!!|||||| ! ++{r}PheIleAlaArgIleGluSerValMetSerGlu 267393 : ....................ag{C}TTCATAGCACGTATCGAAAGTGTAATGAGCGAA : 267490 278 : IleCysPheMetGluMetPheLysCysMetLeuGlyMetCysMetProCysTyrTyrI : 297 |||||||||||||||:!!|||||||||! :!!! !!!:|||:!!! ! !!||||||| IleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSerTyrTyrI 267491 : ATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCTATTATA : 267550 298 : leLeu : 298 ||||| leLeu 267551 : TCCTT : 267555 vulgar: gi|350412806|ref|XP_003489770.1| 0 298 . KQ414889.1 266586 267555 + 810 M 183 549 G 0 6 M 82 246 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266587 267555 810 + . gene_id 4 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266587 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266587 267389 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267555 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266587 267555 810 + . alignment_id 4 ; Query gi|350412806|ref|XP_003489770.1| ; Align 266587 1 549 ; Align 267142 184 246 ; Align 267460 267 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 673 Query range: 9 -> 265 Target range: 262825 -> 263599 10 : LysLysTyrGlyAsnLeuGlyGluTyrSerValGlnLeuSerArgTrpTyrLeuArgP : 29 :!!!..!:!|||!:!|||.!!!!:||||||:!!|||:!!!:!|||||| |||!:!| GluSerPheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysP 262826 : GAAAGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAAC : 262883 30 : roMetGlyAlaTrpProAsnSerProSerThrThrArgArgGluLysIleLeuAlaGl : 48 ||!!:|||||||||||| ||| !!|||! !:!!|||! !|||::!|||:!! ! roIleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPh 262884 : CGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTT : 262940 49 : nIleSerIleValIleCysTrpCysIleValLeuPheThrIleValProGlyPheLeu : 67 :!!! !||||||:!!|||!::|||:!!:!!|||! !|||:!!:!!|||..!.!.||| eLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeu 262941 : TCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTT : 262997 68 : HisIleIleLeuValLysGluAspIleTyrLeuLysLeuLysThrLeuGlyProLeuS : 87 ||||||:!!|||! ! |||:!!.!!:!!:!!||||||:!!..!||||||||||||. HisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuG 262998 : CATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCG : 263057 88 : erHisTrpCysValAspGlyPheAsnTyrAlaValLeuLeuLeuArgGlnGluAspIl : 106 !!!!.|||! !|||! ! !.!!||||||.!! !|||||||||!.!...:!!||||| lyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIl 263058 : GTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATAT : 263114 107 : eAsnTyrCysIleGluArgValArgSerAspTrpLysMetIleThrArgValGlnAsp : 125 |.!. !|||:!::!!!.!|||!:!..!|||||| !!::!:||||||:!!:!!||| eGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAsp 263115 : ACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGAT : 263171 126 : ArgTyrGluMetTrpLysAsnAlaLysLeuGlyArgTyrValAlaGlyPheCysAlaG : 145 !:! ! ||| !||||||||||||! !|||||||||||||||!.!! !|||||| GlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaI 263172 : CAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGA : 263231 146 : lyPheMetGlnGlyThrMetIleTyrThrCysValValLeuGlyAlaPheArgArgTh : 164 !||||||||| !!:!!!:!!:! !! !|||:!!||| !!.! ! !! !!:!.. lePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnVa 263232 : TCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGT : 263288 165 : rIleLysValGlyAsnGluThrMetAspIleTyrThrLeuProCysProAlaTyrLys : 183 !|||:!!! !||||||||||||! !:!! !! !||||||||||||!.!|||||| lIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLys 263289 : GATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAA : 263345 184 : <-><->PheAlaValGlnThrAsnProThrHisAspIleIleLeuGlyThrGlnPheL : 201 .!! !!|||.!.||||||||||||:!!!!:|||.!!|||!.!|||||||||| GluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheL 263346 : GAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTC : 263405 202 : euSerAlaLeuValValSerSerGlyAlaAlaGlySerPheSerLeuAlaThrValPh : 220 |||||!.!!!!:!!|||!!!:!! !.!!!.!|||:!!|||.!!:!!.!!.!!||||| euSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPh 263406 : TGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTT : 263462 221 : eAlaSerHisAlaLeuGlyGlnLeuAsnIleMetValThrTrpValAspGluPheThr : 239 ||||.!!||||||! !||||||||||||:!::!!:!!:!!|||:!! ||||||..! eAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheVal 263463 : CGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTG : 263519 240 : AsnGlnThrLysGlnGlnAsnLysGlnAlaGlnIleAsnLysIleGlyValIleValG : 259 ||||||:!!!:!.!.:!!||||||.!. ! ! .!!!.!:!!|||||||||||||||| AsnGlnSerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValG 263520 : AACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTG : 263579 260 : luHisHisLeuArgValLeu : 265 |||||||||||||||||||| luHisHisLeuArgValLeu 263580 : AACATCATCTGAGAGTTCTG : 263599 vulgar: gi|350412806|ref|XP_003489770.1| 9 265 . KQ414889.1 262825 263599 + 673 M 174 522 G 0 6 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262826 263599 673 + . gene_id 5 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262826 263599 . + . KQ414889.1 exonerate:protein2genome:local exon 262826 263599 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262826 263599 673 + . alignment_id 5 ; Query gi|350412806|ref|XP_003489770.1| ; Align 262826 10 522 ; Align 263354 184 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 514 Query range: 17 -> 399 Target range: 284523 -> 287252 18 : TyrSerValGlnLeuSerArgTrpTyrLeuArgProMetGlyAlaTrpProAsnSerP : 37 ||||||||||||:!!!:!||||||!:!|||!:!|||!!:|||!.!|||||| !|||! TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 38 : roSerThrThrArgArgGluLysIleLeuAlaGlnIleSerIleValIleCysTrpCy : 56 !!!!..!|||! ! !||||||||| !:!! !:!! ! :!!||| !!!! ! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 57 : sIleValLeuPheThrIleValProGlyPheLeuHisIleIleLeuValLysGlu<-> : 75 !:!::!! !||| !:!:|||||| !! !||| !! !:!:|||! !||| eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 76 : AspIleTyrLeuLysLeuLysThrLeuGlyProLeuSerHisTrpCysValAspGlyP : 94 |||:!! !! !|||:!!|||! !:!!|||||||||||| !!! :!!! !.!. AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 95 : heAsnTyrAlaValLeuLeuLeuArgGlnGluAspIleAsnTyrCysIleGluArgVa : 113 !!!!.||| !:!!|||:!!! !||| ! ! |||..! ! |||:!::!! !:! leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 114 : lArgSerAspTrpLysMetIle<-><-><->ThrArgValGlnAspArgTyrGluMet : 129 !|||:!!||||||...:!:! !::::: ::::::||| ||| eArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMet 284813 : TCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTG : 284869 130 : TrpLysAsnAlaLysLeuGlyArgTyrValAlaGlyPheCysAlaGlyPheMet<->G : 148 !! ! !:!|||!:!:!!||||||! !:!!||| !|||||||||||||||||| . ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrS 284870 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATT : 284929 149 : lnGlyThrMetIleTyrThrCysValValLeuGlyAlaPheArgArgThrIleLysVa : 167 ..||| !.!..!!|||||| |||:!!! ! !..! !|||||| ! :! erGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIl 284930 : CCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCAT : 284986 168 : lGlyAsnGluThrMetAspIleTyrThrLeuProCysProAlaTyrLysPheAlaVal : 186 !! !|||||||||:!! ! ! .!!!!!||| ! ! ! ! .!!! ! ! eAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 284987 : CGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCG : 285043 187 : GlnThrAsnProThrHisAspIleIleLeuGlyThrGlnPheLeuSerAlaLeuValV : 206 !::|||!:!|||:!! !!!:|||:!:! ! !! !|||! !|||:!!|||!!!|||: ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValI 285044 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTA : 285103 207 : alSerSerGlyAlaAlaGlySerPheSerLeuAlaThrValPheAlaSerHisAlaLe : 225 !!! !|||! !.!!!.!|||:!!! !|||||||||.!!||||||!.!! !|||!.!! leTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCy 285104 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTG : 285160 226 : uGlyGlnLeuAsnIleMetValThrTrpValAspGluPheThrAsnGlnThrLys<-> : 244 !||||||!!!!..|||:!:|||||| !:!!|||:!!.!!..!:!! !..!||| sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLysGly 285161 : TGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGG : 285217 245 : GlnGlnAsnLysGlnAlaGlnIleAsnLysIleGlyValIleValGluHisHisLeuA : 263 ::!:!!... !....!!!!. !.!.::!:!:|||! !|||:!!||||||||||||! ArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuL 285218 : AGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGA : 285277 264 : rgValLeu{Se} >>>> Target Intron 1 >>>> {r}LeuIleAlaArgIl : 271 :!:!!|||{.!} 1494 bp {!}:!!:!! ! ! ysIleLeu{Gl}++ -+{y}IleLeuPhe---Th 285278 : AGATACTG{GG}gt.........................gg{G}ATATTATTT---AC : 286792 272 : eGluArgIleMetSerProIleCysPheMetGluMetPheLysCysMetLeuGlyMet : 290 !!!: !!! !! ..! !:!:|||!:! .!.! ! ! !...!!::!!!.!.!. rAspGlyAsnArgAspAspLeuCysTyrTyrHisThrValMetAlaIleIleAlaPhe 286793 : TGACGGTAACAGAGACGACTTGTGTTATTACCATACTGTAATGGCAATAATTGCATTC : 286849 291 : CysMetProCysTyrTyrIleLeuAlaGluTrpSerGluHisAsnValGlnAlaMetI : 310 !||| !! ! ! :!!!!! !||||||..!:!! !.!...! !!.!! !| ValMetTyrSerLeuSerValPhe***GluTrpGluGlnSerGluThrIleGlyThrI 286850 : GTCATGTACTCGTTGTCAGTTTTCTAGGAATGGGAGCAAAGTGAAACTATAGGAACGA : 286909 311 : leIleTyrValMetValPheLeuSerMetThrPheAsnIlePheLeuIleCysTyrIl : 329 ||! ||| !! !:!!.!.:!!|||.!.|||||||||:!!|||:!!:!!|||||||| leThrTyrCysThrLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIl 286910 : TCACGTATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACAT : 286966 330 : eGlyGluValLeuLysGluGln >>>> Target Intron 2 >>>> CysGlnL : 339 |||||||:!!|||...|||||| 74 bp ||| !| eGlyGluIleLeuSerGluGln++ ++CysLeuL 286967 : CGGTGAAATTCTCTCCGAACaggt.........................agtGCTTAA : 287070 340 : ysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspLysAsnIleLe : 358 |||||||| ..!||||||! !:!!||||||!::||||||! |||!.. !! ysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGl 287071 : AAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCA : 287127 359 : uSerIleIleMetIleIleSerArgSerHisMetGluValLysIleThrAlaGlyLys : 377 !.!!:!:|||:!!|||.!!:!! !|||:!! ...:!!|||:!!|||||||||||| nGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLys 287128 : AGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAG : 287184 378 : IleIleThrMetSerValTyrThrPheGlyAsnIleIleLysThrValPheThrTyrP : 397 |||||| !:!:|||:!! !!:!||| !!!:!:!:! !! ! ! !!!.:!!|||! IleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyrT 287185 : ATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATT : 287244 398 : heAsnMet : 399 :!:!!:!! yrHisLeu 287245 : ATCATTTG : 287252 vulgar: gi|350412806|ref|XP_003489770.1| 17 399 . KQ414889.1 284523 287252 + 514 M 57 171 G 0 3 M 46 138 G 0 9 M 27 81 G 0 3 M 96 288 G 0 3 M 22 66 S 0 2 5 0 2 I 0 1490 3 0 2 S 1 1 M 3 9 G 1 0 M 66 198 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 287252 514 + . gene_id 6 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284524 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 285287 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286780 286781 . + . intron_id 0 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 286782 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286782 286989 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284524 287252 514 + . alignment_id 6 ; Query gi|350412806|ref|XP_003489770.1| ; Align 284524 18 171 ; Align 284698 75 138 ; Align 284845 121 81 ; Align 284929 148 288 ; Align 285220 244 66 ; Align 286783 267 9 ; Align 286792 271 198 ; Align 287064 337 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 507 Query range: 17 -> 399 Target range: 278576 -> 280465 18 : TyrSerValGlnLeuSerArgTrpTyrLeuArgProMetGlyAlaTrpProAsnSerP : 37 ||||||||||||:!!!:!||||||!:!|||!:!|||!!:|||!.!|||||| !|||! TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 38 : roSerThrThrArgArgGluLysIleLeuAlaGlnIleSerIleValIleCysTrpCy : 56 !!!!..!|||! ! !||||||||| !:!! !:!! ! :!!||| !!!! ! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 57 : sIleValLeuPheThrIleValProGlyPheLeuHisIleIleLeuValLysGlu<-> : 75 !:!::!! !||| !:!:|||||| !! !||| !! !:!:|||! !||| eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 76 : AspIleTyrLeuLysLeuLysThrLeuGlyProLeuSerHisTrpCysValAspGlyP : 94 |||:!! !! !|||:!!|||! !:!!|||||||||||| !!! :!!! !. AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 95 : heAsnTyrAlaValLeuLeuLeuArgGlnGluAspIleAsnTyrCysIleGluArgVa : 113 !!!!.||| !:!!|||:!!! !||| ! ! |||..! ! |||:!:.!. !:! leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 114 : lArgSerAspTrpLysMet<-><-><->IleThrArgValGlnAspArgTyrGluMet : 129 !|||!!!||||||...:!: ! ::: ::::::||| ||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 130 : TrpLysAsnAlaLysLeuGlyArgTyrValAlaGlyPheCysAlaGlyPheMet<->G : 148 !! ! !:!|||!:!:!!||||||! !:!!||| !||| !!|||||||||||| . ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 149 : lnGlyThrMetIleTyrThrCysValValLeuGlyAlaPheArgArgThrIleLysVa : 167 ..||| !:!:.!!||||||..!|||:!!! ! ! ! !|||||| ! :! erGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIl 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCAT : 279039 168 : lGlyAsnGluThrMetAspIleTyrThrLeuProCysProAlaTyrLysPheAlaVal : 186 !! !|||||||||:!! ! ! .!!!!!||| ! ! ! ! .!!! ! ! eAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 279040 : CGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCG : 279096 187 : GlnThrAsnProThrHisAspIleIleLeuGlyThrGlnPheLeuSerAlaLeuValV : 206 !::|||!:!|||:!! !!!:|||:!:! ! !! !|||! !|||:!!|||!!!|||: ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValL 279097 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTT : 279156 207 : alSerSerGlyAlaAlaGlySerPheSerLeuAlaThrValPheAlaSerHisAlaLe : 225 !!! !|||! !.!!!.!|||:!!! !|||||| !.!!||||||!.!! !|||!.!! euTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCy 279157 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTG : 279213 226 : uGlyGlnLeuAsnIleMetValThrTrpValAspGluPheThrAsnGlnThrLys<-> : 244 !||||||!!!!..|||:!:|||||| !:!!|||:!!.!!! !:!! !..!||| sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLysGly 279214 : TGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGG : 279270 245 : GlnGlnAsnLysGlnAlaGlnIleAsnLysIleGlyValIleValGluHisHisLeuA : 263 ::!:!!!:! !....!!!!. !.!.::!:!:|||! !|||:!!||||||||||||! ArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuL 279271 : AGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGA : 279330 264 : rgValLeu{Se} >>>> Target Intron 1 >>>> {r}LeuIleAlaArgIl : 271 :!:!!|||{.!} 657 bp {!}|||.!!.!!!.! ysIleLeu{Gl}++ +-{y}LeuPheThrHisGl 279331 : AGATACTG{GG}gt.........................at{A}TTATTTACTCACGG : 280011 272 : eGluArgIleMetSerProIleCysPheMetGluMetPheLysCysMetLeuGlyMet : 290 !.!.||| ..! !:!!|||!:!.!..!.!!: ! ! !...! :!!!.!.!. yAsnArg------AspAspLeuCysTyrPheHisIleValMetAlaLysIleAlaPhe 280012 : TAACAGA------GACGACTTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTC : 280062 291 : CysMetProCysTyrTyrIleLeuAlaGluTrpSerGluHisAsnValGlnAlaMetI : 310 !||| !! ! ! :!!!!! !||||||..!:!!:!!:!!!.! !!.!! !. ValMetTyrSerLeuSerValPhe***GluTrpGluGlnAsnAspAlaIleGlyThrP 280063 : GTCATGTACTCGTTGTCAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGT : 280122 311 : leIleTyrValMetValPheLeuSerMetThrPheAsnIlePheLeuIleCysTyrIl : 329 !!! |||:!!||| !!.!!:!!|||:!:|||||||||:!!|||:!!:!!|||||||| heThrTyrLeuMetPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIl 280123 : TCACGTATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACAT : 280179 330 : eGlyGluValLeuLysGluGln >>>> Target Intron 2 >>>> CysGlnL : 339 |||||||:!!|||...|||||| 74 bp ||| !| eGlyGluIleLeuSerGluGln++ ++CysLeuL 280180 : CGGTGAAATTCTCTCCGAACaggt.........................agTGCTTAA : 280283 340 : ysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspLysAsnIleLe : 358 ||||||||! ..!||||||! !:!!||||||!::||||||! |||!!. !! ysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGl 280284 : AAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACA : 280340 359 : uSerIleIleMetIleIleSerArgSerHisMetGluValLysIleThrAlaGlyLys : 377 !.!!:!:|||:!!|||.!!:!! !|||:!! ...:!!|||:!!|||||||||||| nGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLys 280341 : AGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAG : 280397 378 : IleIleThrMetSerValTyrThrPheGlyAsnIleIleLysThrValPheThrTyrP : 397 |||||| !:!:|||:!! !!:!||| !!!:!:!:! !! ! ! !!!.:!!|||! IleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyrT 280398 : ATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATT : 280457 398 : heAsnMet : 399 :!:!!:!! yrHisLeu 280458 : ATCATTTG : 280465 vulgar: gi|350412806|ref|XP_003489770.1| 17 399 . KQ414889.1 278576 280465 + 507 M 57 171 G 0 3 M 45 135 G 0 9 M 28 84 G 0 3 M 96 288 G 0 3 M 22 66 S 0 2 5 0 2 I 0 653 3 0 2 S 1 1 M 7 21 G 2 0 M 61 183 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 280465 507 + . gene_id 7 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278577 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279340 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279997 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279996 279997 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 279998 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 279998 280202 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278577 280465 507 + . alignment_id 7 ; Query gi|350412806|ref|XP_003489770.1| ; Align 278577 18 171 ; Align 278751 75 135 ; Align 278895 120 84 ; Align 278982 148 288 ; Align 279273 244 66 ; Align 279999 267 21 ; Align 280020 276 183 ; Align 280277 337 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 453 Query range: 16 -> 269 Target range: 232456 -> 233218 17 : GluTyrSerValGlnLeuSerArgTrpTyrLeuArgProMetGlyAlaTrpProAsnS : 36 |||||||||:!!|||:!!!:!||||||!:!|||! !||||||||||||||||||..! GluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgV 232457 : GAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTG : 232514 37 : erProSerThrThrArgArgGluLysIleLeuAlaGlnIleSerIleValIleCysTr : 55 ! !!..!|||:!!||| !:!!:!!:!!||||||:!!:!:! !! !:!!! !||| alThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHi 232515 : TTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCA : 232571 56 : pCysIleValLeuPheThrIleValProGlyPheLeuHisIleIleLeuValLysGlu : 74 ! !:!::!!:!!! !:!!||||||||| !!.!!||| !|||:!:!!!! ! ! ! sSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThr 232572 : TTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACG : 232628 75 : AspIleTyrLeuLysLeuLysThrLeuGlyProLeuSerHisTrpCysValAspGlyP : 94 ..!:!! ! !!:!:!!|||:!!:!!||||||:!!||||||!:: :!!! !! !! SerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluL 232629 : AGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAAT : 232688 95 : heAsnTyrAlaValLeuLeuLeuArgGlnGluAspIleAsnTyrCysIleGluArgVa : 113 !.||||||..! !|||||| !!:! !.!.|||||| !||||||:!:|||!:!|| euAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnVa 232689 : TGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGT : 232745 114 : lArgSerAspTrpLysMetIleThrArgValGlnAspArgTyrGluMetTrpLysAsn : 132 |!:!..!||||||::!! :!!! !!:! ! !!||| !! !|||! !|||||| lLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsn 232746 : GAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAAC : 232802 133 : AlaLysLeuGlyArgTyrValAlaGlyPheCysAlaGlyPheMetGlnGlyThrMetI : 152 |||||||||||||||! :!!||| !!.!!..!||| !! !|||!!. ! !:!: AlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValG 232803 : GCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCG : 232862 153 : leTyrThrCysValValLeuGlyAlaPheArgArgThrIleLysValGlyAsnGluTh : 171 !! ! ! :!!||| !||| ! !! !!!!|||.!! ! ||||||||||||!: lySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSe 232863 : GCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAG : 232919 172 : rMetAspIleTyrThrLeuProCysProAlaTyrLysPheAlaValGlnThr<-><-> : 189 ! ...!!:||| !!||||||||| !! !|||! ! !:!!.!.||| rTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPhe 232920 : TTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTC : 232976 190 : AsnProThrHisAspIleIleLeuGlyThrGlnPheLeuSerAlaLeuValValSerS : 208 !:!||||||:!!!!:|||!!:!!!! ! !|||! !||||||!.!!!!:!!|||!:!| SerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnS 232977 : AGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACT : 233036 209 : erGlyAlaAlaGlySerPheSerLeuAlaThrValPheAlaSerHisAlaLeuGlyGl : 227 ||! !.!!!.!|||:!!! !.!!|||!.!.!!|||.!.|||! !||||||! !||||| erValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGl 233037 : CCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACA : 233093 228 : nLeuAsnIleMetValThrTrpValAspGluPheThrAsnGlnThrLysGlnGlnAsn : 246 |||||||:!::!!:!!:!! :!!|||!!:!!...!:!! !! ! !|||:!!.!. nLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGlyGlnGluGlu 233094 : GCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAGGAGGAG : 233150 247 : LysGlnAlaGlnIleAsnLysIleGlyValIleValGluHisHisLeuArgValLeuS : 266 !:! |||||| !..|||:!!||| !!|||||||||||||||||||||..!|||! ArgValAlaGln---ArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeuA 233151 : AGAGTCGCGCAG---AGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTAA : 233207 267 : erLeuIleAla : 269 !!! !:!::!! rgTyrLeuSer 233208 : GGTATTTGTCT : 233218 vulgar: gi|350412806|ref|XP_003489770.1| 16 269 . KQ414889.1 232456 233218 + 453 M 172 516 G 0 6 M 62 186 G 1 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232457 233218 453 + . gene_id 8 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232457 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232457 233218 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 232457 233218 453 + . alignment_id 8 ; Query gi|350412806|ref|XP_003489770.1| ; Align 232457 17 516 ; Align 232979 189 186 ; Align 233165 252 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 431 Query range: 2 -> 275 Target range: 236807 -> 237626 3 : AspGluLeuValAlaAlaLysLysLysTyrGlyAsnLeuGlyGluTyrSerValGlnL : 22 |||:!! !|||!.!.!!:!!! !!. ! ! !.!!!!:||||||:!!|||! AspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnT 236808 : GACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGT : 236865 23 : euSerArgTrpTyrLeuArgProMetGlyAlaTrpProAsnSerProSerThrThrAr : 41 !!:!|||||| :!!!:! !!!:|||.!!||||||.!.! ! !!|||!.! !.. rpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerAsnLeuGl 236866 : GGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGAACCTCGA : 236922 42 : gArgGluLysIleLeuAlaGlnIleSerIleValIleCysTrpCysIleValLeuPhe : 60 !|||.!. :!!:!!!:!|||! !! !|||||||||!:: ! !:!!|||||| uArgAsn------IleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPhe 236923 : GAGAAAC------ATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTC : 236973 61 : ThrIleValProGlyPheLeuHisIleIleLeuValLysGluAspIleTyrLeuLysL : 80 :!!|||:!!||| !!! ||||||:!!!!:|||! !|||! ! !.!!||| !|||: SerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysV 236974 : TCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAG : 237033 81 : euLysThrLeuGlyProLeuSerHisTrpCysValAspGlyPheAsnTyrAlaValLe : 99 !!|||! !|||||| !!|||||||||||| !! ! !.!!!:!|||.!!:!!|| alLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLe 237034 : TGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCT : 237090 100 : uLeuLeuArgGlnGluAspIleAsnTyrCysIleGluArgValArgSerAspTrpLys : 118 ||||||||||!:::!! !|||..!:!!! !.!!.!.!.!:!!..!!!!||||||!:! uLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArg 237091 : GTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGA : 237147 119 : MetIleThrArgValGlnAspArgTyrGluMetTrpLysAsnAlaLysLeuGlyArgT : 138 ! !! |||||| ::: ::: |||! !||| !!||||||!!!.!!|||| ThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgT 237148 : ACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGAT : 237207 139 : yrValAlaGlyPheCysAlaGlyPheMetGlnGlyThrMetIleTyrThrCysValVa : 157 ||!.!||| !! !|||.!! !|||!!:!!.||| !!!::!! !||||||:! yrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMe 237208 : ACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTAT : 237264 158 : lLeuGlyAlaPheArgArgThrIleLysValGlyAsnGluThrMetAspIleTyrThr : 176 ! !!.!:!! !! !! !..!:!! !|||||||||:!!|||! ! !:!: !..! tThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLeuArgVal 237265 : GACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGCGTG : 237321 177 : LeuProCysProAlaTyrLys<-><->PheAlaValGlnThrAsnProThrHisAspI : 194 ||||||! ||| !|||||| .!! !!|||.!.|||||| !!! !:!!|||| LeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnAspI 237322 : CTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGACA : 237381 195 : leIleLeuGlyThrGlnPheLeuSerAlaLeuValValSerSerGlyAlaAlaGlySe : 213 ||:!!:!! !:!!||||||||||||!.!!!!:!!!.!!:!!:!.!!||| !.!! leValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSerVa 237382 : TCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAGTGT : 237438 214 : rPheSerLeuAlaThrValPheAlaSerHisAlaLeuGlyGlnLeuAsnIleMetVal : 232 !.!.||||||.!!!:!!.!.!..!!|||||||||! !|||||||||!:!:!::!::!! lIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValValMet 237439 : TATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTTATG : 237495 233 : ThrTrpValAspGluPheThrAsnGlnThrLysGlnGlnAsnLysGlnAlaGlnIleA : 252 !! !:!!!!:!!:|||..!!:!:!!.!!!:!!::::!...|||.!.! !!!..!!: LeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAspHisPheA 237496 : TTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATCATTTCG : 237555 253 : snLysIleGlyValIleValGluHisHisLeuArgValLeuSerLeuIleAlaArgIl : 271 !!:!!||| !..!|||||||||.!.|||||||||||||||!.!! !:!!..! !:! spGluIleProThrIleValGluGluHisLeuArgValLeuLys***ValCysLeuLe 237556 : ACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAGTATGTTTGTT : 237612 272 : eGluArgIleMet : 275 :!!: !|||:!! uAspLeuIleLeu 237613 : GGATTTGATTTTG : 237626 vulgar: gi|350412806|ref|XP_003489770.1| 2 275 . KQ414889.1 236807 237626 + 431 M 41 123 G 2 0 M 138 414 G 0 6 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236808 237626 431 + . gene_id 9 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236808 237626 . + . KQ414889.1 exonerate:protein2genome:local exon 236808 237626 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236808 237626 431 + . alignment_id 9 ; Query gi|350412806|ref|XP_003489770.1| ; Align 236808 3 123 ; Align 236931 46 414 ; Align 237351 184 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 363 Query range: 16 -> 273 Target range: 221375 -> 222149 17 : GluTyrSerValGlnLeuSerArgTrpTyrLeuArgProMetGlyAlaTrpProAsnS : 36 :!!! ||||||||||||||||||||| !|||!:!|||!!:|||!.!|||||||||| LysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleGlyValTrpProAsnS 221376 : AAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATT : 221433 37 : erProSerThrThrArgArgGluLysIleLeuAlaGlnIleSerIleValIleCysTr : 55 || !!!:!! !:!!! ! !|||!:! !||| ! !:!:! !! !|||:!!|||!: erAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLeuIleAsnValValCysTy 221434 : CAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTA : 221490 56 : pCysIleValLeuPheThrIleValProGlyPheLeuHisIleIleLeuValLysGlu : 74 : !!:!::!! !||| !:!:|||||| !! !|||:!!:!:||||||! ! !||| rSerLeuIleThrPheLeuLeuValProCysSerLeuTyrValIleLeuGluValGlu 221491 : CAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAA : 221547 75 : AspIleTyrLeuLysLeuLysThrLeuGlyProLeuSerHisTrpCysValAspGlyP : 94 |||:!!||| !!:!:!!||| !||||||||||||||| !!! :!!! !. AspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysValMetAlaPheL 221548 : GATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTC : 221607 95 : heAsnTyrAlaValLeuLeuLeuArgGlnGluAspIleAsnTyrCysIleGluArgVa : 113 !.!!.||| !:!!|||:!!||| !:!!.!.||||||..! ! ||||||||||||:! euLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCysIleGluArgIl 221608 : TAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCAT : 221664 114 : lArgSerAspTrpLysMetIleThrArgValGlnAspArgTyrGluMetTrpLysAsn : 132 !..!!!!|||||||||! |||||| ! !:!!|||!:! !! !||| :!!||| eGluTrpAspTrpLysAsnIleThrTyrSerLysAspLysAspIleMetIleGluAsn 221665 : CGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAGGATATAATGATAGAGAAC : 221721 133 : AlaLysLeuGlyArgTyrValAlaGlyPheCysAlaGlyPheMetGlnGlyThrMetI : 152 |||! !!!|||||| :!! ! !.!!|||.!! !|||||| ! .!! ...: AlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheMetTyrSerGlyPheV 221722 : GCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGTACAGTggtttcg : 221781 153 : leTyrThrCysValValLeuGlyAlaPheArgArgThrIleLysValGlyAsnGluTh : 171 ::::: ::!!.!:!! ! ! ! ! !!! !||| !.! !:!! .. alPheTyrTyrIleAlaIleProPheSerValGlyLysIleProAlaGlnAspValAs 221782 : ttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaa : 221838 172 : rMetAspIleTyrThrLeuProCysProAlaTyrLysPheAlaValGlnThr<-><-> : 189 .::: ... !!:!! !! !||| !! !:!||| !|||.!.||| nValThrPheIleProMetValPheProPheSerArgPheIleValAspThrArgTyr 221839 : tgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTAC : 221895 190 : AsnProThrHisAspIleIleLeuGlyThrGlnPheLeuSerAlaLeuValValSerS : 208 !:!|||..!:!!!!:|||:!:!!!..! !|||.!!:!!:!!!.! !:!!:!! !| SerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisS 221896 : AGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACA : 221955 209 : erGlyAlaAlaGlySerPheSerLeuAlaThrValPheAlaSerHisAlaLeuGlyGl : 227 || !.!!:!!!.!:!!! !||||||!.!.!!:!!|||||| !||||||! !||||| erIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaValHisAlaCysGlyGl 221956 : GTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCA : 222012 228 : nLeuAsnIleMetValThrTrpValAspGluPheThrAsnGlnThrLysGlnGlnAsn : 246 |:!!.!.:!::!!:!!!:!|||:!! ! .!.!!.! !||| ! !.!...! ! nMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsnGlyArgAlaAspMetCys 222013 : GATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGCCGGGCGGATATGTGT : 222069 247 : LysGlnAlaGlnIleAsnLysIleGlyValIleValGluHisHisLeuArgValLeuS : 266 !!..!.!.!.!. !..!:!|||!.! !||||||.!.!!.|||:!!|||:!!|||. AsnAsnValAsp---ArgArgIleAlaLysIleValAsnGlnHisValArgIleLeuG 222070 : AACAACGTGGAT---AGGAGAATAGCGAAGATTGTGAATCAACACGTTCGAATATTGC : 222126 267 : erLeuIleAlaArgIleGluArg : 273 .!! !:!! ! !!|||! ||| lnTyrValArgCysIleGlyArg 222127 : AGTATGTACGTTGTATCGGCCGt : 222149 vulgar: gi|350412806|ref|XP_003489770.1| 16 273 . KQ414889.1 221375 222149 + 363 M 172 516 G 0 6 M 62 186 G 1 0 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221376 222149 363 + . gene_id 10 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221376 222149 . + . KQ414889.1 exonerate:protein2genome:local exon 221376 222149 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221376 222149 363 + . alignment_id 10 ; Query gi|350412806|ref|XP_003489770.1| ; Align 221376 17 516 ; Align 221898 189 186 ; Align 222084 252 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 340 Query range: 299 -> 404 Target range: 272836 -> 273302 300 : GluTrpSerGluHisAsnValGlnAlaMetIleIleTyrValMetValPheLeuSerM : 319 ||||||!!!!!:|||:!! !!|||::!:!:! !! ||| !!|||:!!.!!:!!|||| GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 320 : etThrPheAsnIlePheLeuIleCysTyrIleGlyGluValLeuLysGluGln >>> : 337 |||||||||||||||||:::::!|||||||||||||||:!!|||! !|||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 338 : > Target Intron 1 >>>> CysGlnLysValGlyAspMetValTyrMetThrA : 348 70 bp |||:::|||:::|||!!::!:||||||||||||| ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 349 : snTrpTyrGlnLeuProAspLysAsnIleLeuSerIleIleMetIleIleSerArgSe : 367 |||||||| ! ||||||! !|||:!!||||||..!:!:|||:!!||||||||||||!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 368 : rHisMetGluValLysIleThrAlaGlyLysIleIleThrMetSerValTyrThrPhe : 386 ! !:!:! !:!!|||||||||||||||!:!|||:!! !!|||||||||||||||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 387 : GlyAsn >>>> Target Intron 2 >>>> IleIleLysThrValPheThrTy : 396 |||:!! 81 bp :::!!:|||!:!!.!|||.!!|| GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 397 : rPheAsnMetLeuArgGlnThrThr : 404 |!!.||||||||||||||||||||| rLeuAsnMetLeuArgGlnThrThr 273277 : CTTAAATATGCTACGACAAACGACA : 273302 vulgar: gi|350412806|ref|XP_003489770.1| 299 404 . KQ414889.1 272836 273302 + 340 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273302 340 + . gene_id 11 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273302 340 + . alignment_id 11 ; Query gi|350412806|ref|XP_003489770.1| ; Align 272837 300 111 ; Align 273018 337 156 ; Align 273255 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 333 Query range: 5 -> 271 Target range: 226894 -> 227695 6 : ValAlaAlaLysLysLysTyrGlyAsnLeuGlyGluTyrSerValGlnLeuSerArgT : 25 :!!|||.!!:!!!!. ! ||| !.!.! ! !.!. |||:!!||||||!:!|||| LeuAlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgT 226895 : CTCGCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTT : 226952 26 : rpTyrLeuArgProMetGlyAlaTrpProAsnSerProSerThrThrArgArgGluLy : 44 || |||!:!|||:!:||| !||||||:::|||! !!.!!:!:!!|||! !! !!: rpLeuLeuLysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGlyAr 226953 : GGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAG : 227009 45 : sIleLeuAlaGlnIleSerIleValIleCysTrpCysIleValLeuPheThrIleVal : 63 ! !!!!:!! !:!:! ! ! !!:!!|||!::...:!::!! !||| !:!:||| gCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuVal 227010 : ATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTC : 227066 64 : ProGlyPheLeuHisIleIleLeuValLysGluAspIleTyrLeuLysLeuLysThrL : 83 !!.!! !|||:!!:!::!!|||! ! !:!!! ! !||| !! !||||||! !: SerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetI 227067 : TCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGA : 227126 84 : euGlyProLeuSerHisTrpCysValAspGlyPheAsnTyrAlaValLeuLeuLeuAr : 102 !!||||||:!!||| !!::...:!!..! !.!!!!.|||:!!:!!||| !!!!!. leGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHi 227127 : TCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCA : 227183 103 : gGlnGluAspIleAsnTyrCysIleGluArgValArgSerAspTrpLysMetIleThr : 121 !:!!!!:|||||| ! ! |||:!!||||||:!!!:!!!!|||||||||! |||! ! sGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArg 227184 : CGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGA : 227240 122 : ArgValGlnAspArgTyrGluMetTrpLysAsnAlaLysLeuGlyArgTyrValAlaG : 141 !:!!:!!|||||| !!! !||| !! ! !!||| ! ! !|||||| ! :!! ! TyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleT 227241 : TACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCA : 227300 142 : lyPheCysAlaGlyPheMetGlnGlyThrMetIle<-><->TyrThrCysValValLe : 158 !.!!|||.!! !|||:!: ...:::...::: |||! ! !||| !:! hrIleCysThrPhePheValPheSerSerPheValPhePheTyrIleValValProIl 227301 : CTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTAT : 227357 159 : uGlyAlaPheArgArgThrIleLysValGlyAsnGluThrMetAspIleTyrThrLeu : 177 !..!||| !!! !.!!! :!!! !||||||.!.!:! ! !!!!! eAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPhe 227358 : CAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTT : 227414 178 : ProCysProAlaTyrLysPheAlaValGlnThrAsnProThrHisAspIleIleLeuG : 197 |||! !||| ! !! !! !|||!:: !!:!||| !:!!!!:|||.!!!!!. ProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheS 227415 : CCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTT : 227474 198 : lyThrGlnPheLeuSerAlaLeuValValSerSerGlyAlaAlaGlySerPheSerLe : 216 .!..!||||||:!!!!!!.!:!!|||:!! !.!!! !.!!:!!!.!:!!! !|||:! erValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMe 227475 : CGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTAT : 227531 217 : uAlaThrValPheAlaSerHisAlaLeuGlyGlnLeuAsnIleMetValThrTrpVal : 235 !|||.!!:!!.!!||| !||||||! !||||||:!!.!.:!::!!|||:!!|||:!! tAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeu 227532 : GGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTG : 227588 236 : AspGluPheThrAsnGlnThrLysGlnGlnAsnLysGlnAlaGlnIleAsnLysIleG : 255 ! .!.!!.! !:!! ! ! !.!...!!:!||| ! !.!. :!!!:!|||! GlyHisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAsp---AspArgIleA 227589 : GGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGAT---GATAGAATCG : 227645 256 : lyValIleValGluHisHisLeuArgValLeuSerLeuIleAlaArgIle : 271 .! !|||||| ||||||:!!|||:!!|||!.!! !:!!.!! !!||| laSerIleValThrHisHisValArgIleLeuLysCysValThrCysIle 227646 : CTAGCATCGTCACTCACCACGTTCGAATATTGAAGTGTGTAACGTGTATC : 227695 vulgar: gi|350412806|ref|XP_003489770.1| 5 271 . KQ414889.1 226894 227695 + 333 M 147 441 G 0 6 M 98 294 G 1 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226895 227695 333 + . gene_id 12 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226895 227695 . + . KQ414889.1 exonerate:protein2genome:local exon 226895 227695 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226895 227695 333 + . alignment_id 12 ; Query gi|350412806|ref|XP_003489770.1| ; Align 226895 6 441 ; Align 227342 153 294 ; Align 227636 252 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 296 Query range: 16 -> 402 Target range: 204233 -> 207601 17 : GluTyrSerValGlnLeuSerArgTrpTyrLeuArgProMetGlyAlaTrpProAsnS : 36 ..!|||:!!..!!::!!! !!:! ! !||| !! !:!:||||||||||||! ! ArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaTrpProIleP 204234 : AGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGTGGCCGATTC : 204291 37 : erProSerThrThrArgArgGluLysIleLeuAlaGlnIleSerIleValIleCysTr : 55 !! !!:!:!!:!!! ! ! !!:!:!!:!! !!:!|||..! !|||:!! !:: roValAsnSerSerProPheThrArgLeuValArgArgIleGluHisValValThrTy 204292 : CAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGTAGTCACCta : 204348 56 : pCysIleValLeuPheThrIleValProGlyPheLeuHisIleIleLeuValLysGlu : 74 : ::: ...... !||||||||||||.!!|||:!!:!:.!!||| !:!!:!! rPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheLeuLysGluLys 204349 : tttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAG : 204405 75 : AspIleTyrLeuLysLeuLysThrLeuGlyProLeuSerHisTrpCysValAspGlyP : 94 :!! ! ! :!!:::||||||! !|||||||||:!! !:!!!! !!:!!.!. !| AsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSerIleGlnPheP 204406 : AACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCATACAGTTCT : 204465 95 : heAsnTyrAlaValLeuLeuLeuArgGlnGluAspIleAsnTyrCysIleGluArgVa : 113 ||!!.|||:!!|||:!!|||! !||| !!: ! |||.!. ! !!:!:.!.! !:! heLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSerLeuAsnThrIl 204466 : TCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGTTTGAACACCAT : 204522 114 : lArgSerAspTrpLysMetIleThrArgValGlnAspArgTyrGluMetTrpLysAsn : 132 !||| !!||||||! ! ! !||| ! :!!:!!|||! .!. ! ..!!!. eArgArgAspTrpIleGluAlaThrAsp---GluAsnArgLeuIlePheArgSerLys 204523 : CAGACGCGACTGGATAGAGGCTACGGAT---GAAAATCGGTTGATTTTCCGCTCGAAA : 204576 133 : AlaLysLeuGlyArgTyrValAlaGlyPheCysAlaGlyPheMetGlnGlyThrMetI : 152 ||||||:!!|||||| ||| ! !.!!...|||!.! !||| ! ||| ! : AlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetTyrGlyGlyGlyL 204577 : GCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGTACGGCGGTGGTT : 204636 153 : leTyrThrCysValValLeuGlyAlaPheArgArgThrIleLysValGlyAsnGluTh : 171 !:! ! ! ! ..!:!!||| ! !!!.||| !!|||||| ||| ! !!!:!. euCysTyrArgThrIleLeuProLeuLeuArgGlyThrIle---ValThrProAspAs 204637 : TGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATC---GTAACACCTGATAA : 204690 172 : rMetAspIleTyrThrLeuProCysProAlaTyr<-><->LysPheAlaValGlnThr : 188 !:!: !||| !!||||||||||||!.!||| ||| ! !||| ! nValThrIleArgProLeuProCysProValTyrPheValPhePheAsnGluGlnArg 204691 : CGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaacGAGCAACGT : 204747 189 : AsnProThrHisAspIleIleLeuGlyThrGlnPheLeuSerAlaLeuValValSerS : 208 :::|||!.!:!!!!:|||:!!!!! ! !|||.!!:!!:!!!.!!!!|||..!! !: SerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheValThrTyrA 204748 : TCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTGTTACTTACG : 204807 209 : erGlyAlaAlaGlySerPheSerLeuAlaThrValPheAlaSerHisAlaLeuGlyGl : 227 !!! ! !::!|||!!!! !.!!:!!..!.!!:!!|||!.! !||||||! !.!!.. laValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAlaCysSerMe 204808 : CTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGCGTGCAGCAT : 204864 228 : nLeuAsnIleMetValThrTrpValAspGluPheThrAsnGlnThrLysGlnGlnAsn : 246 !|||!..|||:!!|||!.! !:!!:!!! !.!!..!:!!:!!.!! ! ..! .!. tLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAlaAspMetThrGlu 204865 : GCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCGGACATGACCGAG : 204921 247 : LysGlnAlaGlnIleAsnLysIleGlyValIleValGluHisHisLeuArgValLeu{ : 266 ! !! !.!!!. !..||||||!.!! !|||||||||:!!!!. !!:!:!! !{ ThrLeuValHis---ArgLysIleAlaAspIleValGluTyrGlnThrLysIleLys{ 204922 : ACACTTGTGCAC---AGGAAGATCGCTGATATTGTTGAATATCAGACGAAGATAAAG{ : 204978 267 : Se} >>>> Target Intron 1 >>>> {r}LeuIleAlaArgIleGluArgIl : 274 !!} 1055 bp {!} !|||!.! ! ||| !! Ar}++ ++{g}ThrIleValPhe***GluTrpGl 204979 : AG}gt.........................ag{G}ACGATCGTGTTTTAGGAATGGGA : 206057 275 : eMetSerProIleCysPheMetGluMetPheLysCysMetLeuGlyMetCysMetPro : 293 ! !:! !! ! :!: !:!!!:!! :!!! ! ! |||! ! uAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerCysThrPhe 206058 : GAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTTGTACATTC : 206114 294 : CysTyrTyrIleLeuAlaGluTrpSerGluHisAsnValGlnAlaMetIleIleTyrV : 313 ||| !!:!||||||..! ! .!!:!!! ! !:!!.!. !:!! ! !|||| CysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGlnValArgAspTyrV 206115 : TGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAGTGCGTGATTACG : 206174 314 : alMetValPheLeuSerMetThrPheAsnIlePheLeuIleCysTyrIleGlyGluVa : 332 || :!! ! ! ! :::...::: |||... !! !||| ! ! alSerMetLysTyrValAspSerLeuAsp---PhePheAsnSerTyr***LysTyrTy 206175 : TATCAATGAAGTACGTGGattctttggat---ttttttaaCTCTTACTAGAAGTATTA : 206228 333 : lLeuLysGluGlnCysGlnLysValGlyAspMetValTyrMetThrAsnTrpTyrGln : 351 !! ! !!||| !!!. |||||| ! !! !! !..!|||||||||!:: rHisPhe***GlnAsnHisValValGlyLeuThrSerCysThrValAsnTrpTyrArg 206229 : CCATTTTTAACAGAACCACGTCGTGGGATTGACATCTTGCACGGTGAATTGGTATCGT : 206285 352 : LeuProAspLysAsnIleLeuSerIleIleMetIleIleSerArgSerHisMetGluV : 371 ||||||:!!!:!:!! ! !|||!!:|||:!!||||||:!!! !|||:!! !: LeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSerAsnTyrProI 206286 : CTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTCTAATTACCCAA : 206345 372 : alLysIleThrAlaGlyLysIleIleThrMetSerValTyrThrPheGlyAsn >>> : 389 !!|||:!!||||||||||||!!:.!! !||||||:!! !!:!||| !:!! leLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPheThrAsp++ 206346 : TAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTCACCGATgt... : 206401 390 : > Target Intron 2 >>>> IleIleLysThrValPheThrTyrPheAsnMetL : 400 1161 bp :!!!!:|||..!!.!.!. !|||||||||!!:| ++ValMetLysValAlaMetGlyTyrPheAsnIleL 206402 : ......................agGTAATGAAGGTGGCGATGGGATACTTCAACATAC : 207593 401 : euArgGln : 402 |||||:!! euArgGlu 207594 : TCCGTGAA : 207601 vulgar: gi|350412806|ref|XP_003489770.1| 16 402 . KQ414889.1 204233 207601 + 296 M 106 318 G 1 0 M 42 126 G 1 0 M 16 48 G 0 6 M 68 204 G 1 0 M 14 42 S 0 2 5 0 2 I 0 1051 3 0 2 S 1 1 M 56 168 G 1 0 M 65 195 5 0 2 I 0 1157 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204234 207601 296 + . gene_id 13 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 204234 204979 . + . KQ414889.1 exonerate:protein2genome:local exon 204234 204979 . + . insertions 6 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 204980 204981 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 204980 206034 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206033 206034 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206035 206398 . + . KQ414889.1 exonerate:protein2genome:local exon 206035 206398 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 206399 206400 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206399 207559 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 207558 207559 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 207560 207601 . + . KQ414889.1 exonerate:protein2genome:local exon 207560 207601 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 204234 207601 296 + . alignment_id 13 ; Query gi|350412806|ref|XP_003489770.1| ; Align 204234 17 318 ; Align 204552 124 126 ; Align 204678 167 48 ; Align 204732 183 204 ; Align 204936 252 42 ; Align 206036 267 168 ; Align 206204 324 195 ; Align 207560 389 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 282 Query range: 17 -> 265 Target range: 303196 -> 304866 18 : TyrSerValGlnLeuSerArgTrpTyrLeuArgProMetGlyAlaTrpProAsnSerP : 37 ||| !..!:!!! !|||!:!||| !|||!:! !!:!:||| !|||||| ! ! TyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTrpProAlaValL 303197 : TACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTGGCCAGCCGTGT : 303254 38 : roSerThrThrArgArgGluLysIleLeuAlaGlnIleSerIleValIleCysTrpCy : 56 !..! !||| ! ! !.!!||| !!:!!|||!!!|||! !:!! !! ! euAspGluThr------AlaGlyPheLeuProLysIleThrIleGlyLeuSerAsnLe 303255 : TGGACGAAACC------GCAGGATTCCTACCAAAAATCACCATTGGACTCAGTAATTT : 303305 57 : sIleValLeuPheThrIleValProGlyPheLeuHisIleIleLeuValLysGluAsp : 75 :!!:!!|||||||||:!::!!||| !!.!!||||||||||||!!!! !:!!:!!||| uValLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnLysAsp 303306 : GGTTCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAAAGGAT : 303362 76 : IleTyrLeuLysLeuLysThrLeuGlyProLeuSerHisTrpCysValAspGlyPheA : 95 ! :!!!:!|||||| !!!!|||! !|||||| !!! ! :!!... !.!.! ThrIleIleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLeuMetL 303363 : ACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTTGATGA : 303422 96 : snTyrAlaValLeuLeuLeuArgGlnGluAspIleAsnTyrCysIleGluArgValAr : 114 !.||| !!.!||| ! !|||:!! ! |||!!. ! |||||||||..!|||!: ysTyrTrpAlaLeuAlaThrArgLysProArgIleLysGluCysIleGluGluValGl 303423 : AGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAGGTGCA : 303479 115 : gSerAspTrpLysMet >>>> Target Intron 1 >>>> IleThrArgValG : 124 !|||||||||||| ! 938 bp :!: ! !:!!: nSerAspTrpLysGlu++ ++ValGluSerLeuA 303480 : AAGTGATTGGAAAGAGgt.........................agGTGGAATCTCTCA : 304447 125 : lnAspArgTyrGluMetTrpLysAsnAlaLysLeuGlyArgTyrValAlaGlyPheCy : 143 :!|||||| ! !||| ||| !!!.!:!!:!!|||||| !!:!!.!! !.!!|| rgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIleCy 304448 : GAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAATCTG : 304504 144 : sAlaGlyPheMet<->GlnGlyThrMetIleTyrThrCysValValLeuGlyAlaPhe : 161 |||| !|||||| ||| !! |||||| ! |||:!!! ! !||| ! sAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheAlaThr 304505 : CGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCGACC : 304561 162 : ArgArgThrIleLysValGlyAsnGluThrMetAspIleTyrThrLeuProCysProA : 181 !!! ! !:!: ! ! ! !|||...|||!!: ! !..!! !||| ! !: GlyThrTyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProThrTyrS 304562 : GGAACGTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACCTACA : 304621 182 : laTyrLysPheAlaValGlnThrAsnProThrHisAspIleIleLeuGlyThrGlnPh : 200 :! ! !|||! !|||||||||!:!|||! !:!!!!::!::!!! ! !..!!!.! erAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheValHisCy 304622 : GTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCATTG : 304678 201 : eLeuSerAlaLeuValValSerSerGlyAlaAlaGlySerPheSerLeuAlaThrVal : 219 !:!!!!!!.!! !|||:!!! !||| !.!!||||||:!!! !.!!||||||.!!:!! sMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeu 304679 : CATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCTT : 304735 220 : PheAlaSerHisAlaLeuGlyGlnLeuAsnIleMetValThrTrpValAspGluPheT : 239 ||||||!!!||||||! !||||||:!!:!!|||:!::!!:!! ! :!!! !!!:.!!. PheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAspLeuV 304736 : TTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGATCTTG : 304795 240 : hrAsnGlnThrLysGlnGlnAsnLysGlnAlaGlnIleAsnLysIleGlyValIleVa : 258 .!|||...! !:!!..!...:!! !.!. !!:!:!!! :!! ||||| alAsnSerLysGluSerSerAspLeuAspLysArgLeuIleGlu---------IleVa 304796 : TCAACAGCAAAGAATCATCTGATTTAGATAAACGATTAATAGAA---------ATTGT : 304843 259 : lGluHisHisLeuArgValLeu : 265 ||||||||||||||||:!!||| lGluHisHisLeuArgIleLeu 304844 : TGAGCATCATTTGCGAATTTTA : 304866 vulgar: gi|350412806|ref|XP_003489770.1| 17 265 . KQ414889.1 303196 304866 + 282 M 23 69 G 2 0 M 77 231 5 0 2 I 0 934 3 0 2 M 28 84 G 0 3 M 106 318 G 3 0 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303197 304866 282 + . gene_id 14 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303197 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303197 303496 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304866 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304866 . + . insertions 3 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 303197 304866 282 + . alignment_id 14 ; Query gi|350412806|ref|XP_003489770.1| ; Align 303197 18 69 ; Align 303266 43 231 ; Align 304435 120 84 ; Align 304522 148 318 ; Align 304840 257 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 273 Query range: 16 -> 265 Target range: 289732 -> 290479 17 : GluTyrSerValGlnLeuSerArgTrpTyrLeuArgProMetGlyAlaTrpProAsnS : 36 ...|||!!! !!:!!|||!!!!.!||| !|||!:!|||!!:||| !!::||| ! ArgTyrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrProPheV 289733 : CGTTACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCG : 289790 37 : erProSer<->ThrThrArgArgGluLysIleLeuAlaGlnIleSerIleValIleCy : 54 ! !||| .!!!:!|||||||||::!! !:!! !:!: !|||:!!:!!|| alPheSerArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLeuValCy 289791 : TCTTTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATG : 289847 55 : sTrpCysIleValLeuPheThrIleValProGlyPheLeuHisIleIleLeuValLys : 73 |!! ! |||:!!! !|||! !||||||||| ! !! !|||:!!:!!!!! ! ! sCysSerIleLeuGlnPheIleIleValProPheSerHisHisValLeuPheSerAsp 289848 : TTGCTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGAC : 289904 74 : GluAspIleTyrLeuLysLeuLysThrLeuGlyProLeuSerHisTrpCysValAspG : 93 .!.|||!!: !! ! :!!|||!.!||||||||||||!!! !!! ! ..! AsnAspMetAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuThrThrP 289905 : AACGACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGT : 289964 94 : lyPheAsnTyrAlaValLeuLeuLeuArgGlnGluAspIleAsnTyrCysIleGluAr : 112 !|||!!.|||..! !!!! !:!!!:! ..!! |||..! !|||:!::!!!. hePheLysTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysValLysHi 289965 : TCTTCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACA : 290021 113 : gValArgSerAspTrpLysMetIleThrArgValGlnAspArgTyrGluMetTrpLys : 131 !:!!..!!!!||||||||||||:!: ! !! !.!. !!||| ! ||| !:! sIleGluArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMetLeuArg 290022 : CATCGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGA : 290078 132 : AsnAlaLysLeuGlyArgTyrValAlaGlyPheCysAlaGlyPheMetGlnGlyThrM : 151 !!!.!! !:!!.!!||| !!:!! ! !.!.|||||| !|||:!! ! ! ! TyrValThrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyG 290079 : TACGTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTG : 290138 152 : etIleTyrThrCysValValLeuGlyAlaPheArgArgThrIleLysValGlyAsnGl : 170 :!:! ! ! !..!|||:!! ! !||| !!:!! !! ! ! !||||||! lyLeuSerTyrAsnThrValIleProLeuPheSerLysLysSerValAsnGlyAsnVa 290139 : GTCTGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGGTAACGT : 290195 171 : uThrMetAspIleTyrThrLeuProCysProAlaTyrLysPheAlaValGlnThrAsn : 189 !|||!!: ! |||! !||| !! !! ! ! |||! !||||||! !!:! lThrIleArgProLeuThrTyrProGlyTyrGluGluPhePheAspValGlnLysSer 290196 : GACTATCAGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGT : 290252 190 : ProThrHisAspIleIleLeuGlyThrGlnPheLeuSerAlaLeuValValSerSerG : 209 |||.!!:!!!!:|||:!!!!! !!! !!!.! !:!!! !!.!:!!:!!..!:!!!:! ProAlaTyrGluIleValPheCysMetHisCysValTyrValMetIleThrAlaAsnI 290253 : CCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACA : 290312 210 : lyAlaAlaGlySerPheSerLeuAlaThrValPheAlaSerHisAlaLeuGlyGlnLe : 228 !.!! !!.!:!!!:!||||||.!!|||:!!||||||!!!|||.!!! !||||||:! leThrMetAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGlnIl 290313 : TCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGAT : 290369 229 : uAsnIleMetValThrTrpValAspGluPheThrAsnGlnThrLysGlnGlnAsnLys : 247 !!!.|||.....!||| !!:!!!!:!!:.!.|||!!.::! !! !! ! !.!.||| eLysIleGlnThrThrArgLeuGluAspLeuThrLysArgGlyMetLeuLeuGluLys 290370 : TAAGATACAAACGACGCGGCTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAGAAG : 290426 248 : GlnAlaGlnIleAsnLysIleGlyValIleValGluHisHisLeuArgValLeu : 265 !!.!... :!!::::!:!.!|||:!!|||... !|||:!!..!:!!||| GlyValSer---AspArgLeuAlaValValValSerGlyHisValGluIleLeu 290427 : GGAGTGAGT---GATCGTTTGGCGGTTGTTGTGAGCGGTCACGTGGAGATCTTG : 290479 vulgar: gi|350412806|ref|XP_003489770.1| 16 265 . KQ414889.1 289732 290479 + 273 M 22 66 G 0 3 M 212 636 G 1 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289733 290479 273 + . gene_id 15 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289733 290479 . + . KQ414889.1 exonerate:protein2genome:local exon 289733 290479 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 289733 290479 273 + . alignment_id 15 ; Query gi|350412806|ref|XP_003489770.1| ; Align 289733 17 66 ; Align 289802 39 636 ; Align 290438 252 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 266 Query range: 301 -> 389 Target range: 234809 -> 235147 302 : SerGluHisAsnValGlnAlaMetIleIleTyrValMetValPheLeuSerMetThrP : 321 ..!||| ! ::: ::: ::: ! !||||||!!:|||!:!:!!|||||||||| GlnGluLysSerLysGluLysLeuAlaSerTyrValIleValTyrValSerMetThrP 234810 : CAGGAAAAgtcgaaggaaaaattagCTTCATACGTCATCGTGTACGTGTCCATGACAT : 234867 322 : heAsnIlePheLeuIleCysTyrIleGlyGluValLeuLysGluGln >>>> Targ : 337 |||||||||||:::...|||||||||||||||..!|||! !|||||| heAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGln++ 234868 : TtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGCAGgt......... : 234917 338 : et Intron 1 >>>> CysGlnLysValGlyAspMetValTyrMetThrAsnTrpT : 350 74 bp ||| |||||||||!!:! ||||||||||||.!.|||| ++CysThrLysValGlyGluLysValTyrMetThrGluTrpT 234918 : ................agTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGT : 235028 351 : yrGlnLeuProAspLysAsnIleLeuSerIleIleMetIleIleSerArgSerHisMe : 369 ||!:!|||||| !!|||!.! !|||.!!:!::!!|||||||||||||||||| !|| yrArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMe 235029 : ACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCAT : 235085 370 : tGluValLysIleThrAlaGlyLysIleIleThrMetSerValTyrThrPheGlyAsn : 388 |! !:!!||||||||||||||||||.!!:!! !||||||||| |||||||||:!! tValIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAsp 235086 : GGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGAT : 235142 389 : Ile : 389 :!: Val 235143 : GTG : 235147 vulgar: gi|350412806|ref|XP_003489770.1| 301 389 . KQ414889.1 234809 235147 + 266 M 35 105 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234810 235147 266 + . gene_id 16 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234810 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234810 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234810 235147 266 + . alignment_id 16 ; Query gi|350412806|ref|XP_003489770.1| ; Align 234810 302 105 ; Align 234989 337 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 247 Query range: 299 -> 392 Target range: 254071 -> 254442 300 : GluTrpSerGluHisAsnValGlnAlaMetIleIleTyrValMetValPheLeuSerM : 319 ||||||!!!||| !:!!!.!||| !:!:.!!! |||:!!:!:..!.!!:!!:!!: GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaV 254072 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTG : 254129 320 : etThrPheAsnIlePheLeuIleCysTyrIleGlyGluValLeuLysGluGln >>> : 337 !:..! ||| ||||||||||||||||||.!!!!: !|||! !|||||| alValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 254130 : TTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt... : 254185 338 : > Target Intron 1 >>>> CysGlnLysValGlyAspMetValTyrMetThrA : 348 92 bp ||| !|||||||||!!::!!||||||||||||: ++CysLeuLysValGlyGluValValTyrMetThrA 254186 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 254308 349 : snTrpTyrGlnLeuProAspLysAsnIleLeuSerIleIleMetIleIleSerArgSe : 367 !!|||||| ! ||||||.!.!:!!..||||||..!:!!|||:!!||||||!!!||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSe 254309 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATC : 254365 368 : rHisMetGluValLysIleThrAlaGlyLysIleIleThrMetSerValTyrThrPhe : 386 |:!!:!!! |||:!!||||||||||||||||||... ||||||:!!||||||||| rAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPhe 254366 : GAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTC : 254422 387 : GlyAsnIleIleLysThr : 392 |||:!!:!!! !:!!||| GlyAspValSerGluThr 254423 : GGCGATGTAAGTGAAACT : 254442 vulgar: gi|350412806|ref|XP_003489770.1| 299 392 . KQ414889.1 254071 254442 + 247 M 37 111 5 0 2 I 0 88 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254072 254442 247 + . gene_id 17 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254072 254182 . + . KQ414889.1 exonerate:protein2genome:local exon 254072 254182 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254183 254184 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254183 254274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254273 254274 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254275 254442 . + . KQ414889.1 exonerate:protein2genome:local exon 254275 254442 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254072 254442 247 + . alignment_id 17 ; Query gi|350412806|ref|XP_003489770.1| ; Align 254072 300 111 ; Align 254275 337 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 243 Query range: 299 -> 392 Target range: 244441 -> 244826 300 : GluTrpSerGluHisAsnValGlnAlaMetIleIleTyrValMetValPheLeuSerM : 319 ||||||:!!||| !:!!!.!:!! !:!:|||! ||| !!!!:!.!.!!:!!:!!! GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheIleAlaLeuValAlaI 244442 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTATAGCACTCGTTGCTA : 244499 320 : etThrPheAsnIlePheLeuIleCysTyrIleGlyGluValLeuLysGluGln >>> : 337 !:..!! !|||! !|||:!!:!!|||||||||.!!!!: !|||! !|||||| leValSerAsnThrPheIleLeuCysTyrIleSerAspArgLeuThrGluGln++ 244500 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGACAGGCTGACAGAACAGgt... : 244555 338 : > Target Intron 1 >>>> CysGlnLysValGlyAspMetValTyrMetThrA : 348 106 bp ||| !|||||||||!!::!!||||||||||||: ++CysLeuLysValGlyGluValValTyrMetThrA 244556 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 244692 349 : snTrpTyrGlnLeuProAspLysAsnIleLeuSerIleIleMetIleIleSerArgSe : 367 !!|||||| ! ||||||.!.!:!!..||||||..!:!!|||:!!||||||!.!||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSe 244693 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATC : 244749 368 : rHisMetGluValLysIleThrAlaGlyLysIleIleThrMetSerValTyrThrPhe : 386 |:!!|||! |||:!!|||||||||||||||:!!:!! !||||||:!!||||||||| rAsnMetValValGluIleThrAlaGlyLysValLeuHisMetSerLeuTyrThrPhe 244750 : GAACATGGTCGTTGAAATCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTC : 244806 387 : GlyAsnIleIleLysThr : 392 |||:!!:!!! !:!!||| GlyAspValSerGluThr 244807 : GGCGATGTAAGTGAAACT : 244826 vulgar: gi|350412806|ref|XP_003489770.1| 299 392 . KQ414889.1 244441 244826 + 243 M 37 111 5 0 2 I 0 102 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244442 244826 243 + . gene_id 18 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244442 244552 . + . KQ414889.1 exonerate:protein2genome:local exon 244442 244552 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244553 244554 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244553 244658 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244657 244658 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244659 244826 . + . KQ414889.1 exonerate:protein2genome:local exon 244659 244826 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244442 244826 243 + . alignment_id 18 ; Query gi|350412806|ref|XP_003489770.1| ; Align 244442 300 111 ; Align 244659 337 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 236 Query range: 294 -> 389 Target range: 214614 -> 215022 295 : TyrTyrIleLeuAlaGluTrpSerGluHisAsnValGlnAlaMetIleIleTyrValM : 314 ::: |||||| ||||||!:!..!:!!|||:!! !.!!! :!!! !||||||: PheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValV 214615 : tttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGG : 214672 315 : etValPheLeuSerMetThrPheAsnIlePheLeuIleCysTyrIleGlyGluValLe : 333 !!:!!!:!:!!|||:::|||||||||||||||:::...|||||||||||||||:!!:! alLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuVa 214673 : TGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGGCGAGCTTGT : 214729 334 : uLysGluGln >>>> Target Intron 1 >>>> CysGlnLysValGlyAspM : 343 !...|||||| 123 bp |||:!!|||||||||!!:: lSerGluGln++ ++CysLysLysValGlyGluV 214730 : GTCTGAACAGgt.........................agTGCAAAAAGGTCGGAGAAG : 214882 344 : etValTyrMetThrAsnTrpTyrGlnLeuProAspLysAsnIleLeuSerIleIleMe : 362 !: !||||||! !.!.||||||!:!||||||! !!!.!!.! |||!!! !|||:! alSerTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCysCysIleLe 214883 : TATCGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTGTTGCATTTT : 214939 363 : tIleIleSerArgSerHisMetGluValLysIleThrAlaGlyLysIleIleThrMet : 381 !|||!!::!!! !|||:!! ...||||||.!!|||||||||!!.!!::!! !:!! uIleMetAlaMetSerAsnSerSerValLysPheThrAlaGlyAsnMetValGluLeu 214940 : GATCATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATGGTAGAACTG : 214996 382 : SerValTyrThrPheGlyAsnIle : 389 |||:!! !||||||.!!!:!:!! SerIleSerThrPheSerSerVal 214997 : TCTATCAGCACTTTCAGCAGTGTA : 215022 vulgar: gi|350412806|ref|XP_003489770.1| 294 389 . KQ414889.1 214614 215022 + 236 M 42 126 5 0 2 I 0 119 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214615 215022 236 + . gene_id 19 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214615 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214615 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214615 215022 236 + . alignment_id 19 ; Query gi|350412806|ref|XP_003489770.1| ; Align 214615 295 126 ; Align 214864 337 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 229 Query range: 299 -> 393 Target range: 224323 -> 224670 300 : GluTrpSerGluHisAsnValGlnAlaMetIleIleTyrValMetValPheLeuSerM : 319 |||||||||... :!!:!! ::! !:!:! !||| !!!!::!!.!!:!!|||: GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 320 : etThrPheAsnIlePheLeuIleCysTyrIleGlyGluValLeuLysGluGln >>> : 337 ::|||||||||||||||:::...|||||||||||||||:!!:!! |||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln++ 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggt... : 224437 338 : > Target Intron 1 >>>> CysGlnLysValGlyAspMetValTyrMetThrA : 348 65 bp |||:::|||:::|||...:!! !||||||! !: ++CysGluLysIleGlyGlnValSerTyrMetIleA 224438 : ......................agtgtgaaaaaattggacaAGTGTCGTACATGATCG : 224533 349 : snTrpTyrGlnLeuProAspLysAsnIleLeuSerIleIleMetIleIleSerArgSe : 367 !!||||||!:!||| !!! !!.!!.! !|||!!! !|||:!!||||||:!!! !|| spTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 224534 : ACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGATGTC : 224590 368 : rHisMetGluValLysIleThrAlaGlyLysIleIleThrMetSerValTyrThrPhe : 386 |:!! ..!:!!|||:!:|||||||||!!.!!::!! !:!!!!!:!! !|||||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThrPhe 224591 : CAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACTTTC : 224647 387 : GlyAsnIleIleLysThrVal : 393 |||:!!:!!! !! |||:!! GlyAspValSerIleThrIle 224648 : GGTGACGTAAGTATCACAATC : 224670 vulgar: gi|350412806|ref|XP_003489770.1| 299 393 . KQ414889.1 224323 224670 + 229 M 37 111 5 0 2 I 0 61 3 0 2 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224670 229 + . gene_id 20 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224670 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224670 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224670 229 + . alignment_id 20 ; Query gi|350412806|ref|XP_003489770.1| ; Align 224324 300 111 ; Align 224500 337 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 226 Query range: 295 -> 404 Target range: 305088 -> 305830 296 : TyrIleLeuAlaGluTrpSerGluHisAsnValGlnAlaMetIleIleTyrValMetV : 315 |||::: !!!:|||..!... !|||..! ::!:!:! !! !|||..!:!!: TyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValL 305089 : tatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGT : 305146 316 : alPheLeuSerMetThrPheAsnIlePheLeuIleCysTyrIleGlyGluValLeuLy : 334 !!.!.:!!|||:!:|||||||||||||||:!!:!!|||||||||||||||:!!|||! euLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMe 305147 : TACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTAT : 305203 335 : sGluGln >>>> Target Intron 1 >>>> CysGlnLysValGlyAspMetV : 344 !|||:!! 413 bp !!...!..|||||| tGluLys++ ++SerSerSerValGlyLeuSerC 305204 : GGAAAAGgt.........................agAGCAGTAGCGTTGGATTATCCT : 305646 345 : alTyrMetThrAsnTrpTyrGlnLeuProAspLysAsnIleLeuSerIleIleMetIl : 363 !!:!|||! !!:!||||||!!.|||||| !|||!..|||! !.!!:!!|||:!:|| ysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleLeuIl 305647 : GTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTTTAAT : 305703 364 : eIleSerArgSerHisMetGluValLysIleThrAlaGlyLysIleIleThrMetSer : 382 ||||:!!! !||| !! !!.!||||||!:!|||||||||:!!:!! !:!:||| eIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysValValAspLeuSer 305704 : CATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTATCT : 305760 383 : ValTyrThrPheGlyAsnIle--IleLysThrValPheThrTyrPheAsnMetLeuAr : 401 :!!! !||||||||||||:!:##:!! !::::::||| ||||||||| LeuSerThrPheGlyAsnVal##LeuLeuSerIlePheGlnTyrPheAsnCysTyrIl 305761 : TTATCCACATTTGGAAACGTGAGTTACTATcaatattccaatatttcaattgttatat : 305819 402 : gGlnThrThr : 404 ::: ||| eGluIleThr 305820 : tgaaataact : 305830 vulgar: gi|350412806|ref|XP_003489770.1| 295 404 . KQ414889.1 305088 305830 + 226 M 41 123 5 0 2 I 0 409 3 0 2 M 53 159 F 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305089 305830 226 + . gene_id 21 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305089 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305089 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305830 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305830 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local similarity 305089 305830 226 + . alignment_id 21 ; Query gi|350412806|ref|XP_003489770.1| ; Align 305089 296 123 ; Align 305625 337 159 ; Align 305786 390 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 224 Query range: 295 -> 392 Target range: 210651 -> 211941 296 : TyrIleLeuAlaGluTrpSerGluHisAsnValGlnAlaMetIleIleTyrValMetV : 315 !:!:!!||| !||||||..!... ! :!! ! ::!! :!:! |||:!!:!:: PheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValL 210652 : TTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTAC : 210709 316 : alPheLeuSerMetThrPheAsnIlePheLeuIleCysTyrIleGlyGluValLeuLy : 334 !!.!! !|||:!:|||||||||||||||:!!.!!||||||||||||||||||||| euLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAl 210710 : TCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGC : 210766 335 : sGluGln >>>> Target Intron 1 >>>> CysGlnLysValGlyAspMetV : 344 |||||| 999 bp !|||||||||!!:! ! aGluGln++ ++ThrValLysValGlyGluLysS 210767 : TGAACAggt.........................agACAGTAAAAGTTGGAGAAAAGT : 211795 345 : alTyrMetThrAsnTrpTyrGlnLeuProAspLysAsnIleLeuSerIleIleMetIl : 363 !||||||! !:!!||||||!:!:!!|||! |||!!. !||| !:!! !:!!!! erTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValValProLeuMe 211796 : CTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGAT : 211852 364 : eIleSerArgSerHisMetGluValLysIleThrAlaGlyLysIleIleThrMetSer : 382 :||||||! !|||||| ! ..!|||||||||||||||!!.:!!|||..!:!:||| tIleSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleValLeuSer 211853 : GATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTTCTTTCA : 211909 383 : ValTyrThrPheGlyAsnIleIleLysThr : 392 :!! !!:!||||||:!!:!!! ||| IleSerSerPheGlyAspValSerValThr 211910 : ATCAGTAGTTTCGGTGACGTAAGtgttaca : 211941 vulgar: gi|350412806|ref|XP_003489770.1| 295 392 . KQ414889.1 210651 211941 + 224 M 41 123 5 0 2 I 0 995 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210652 211941 224 + . gene_id 22 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 210652 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210652 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211941 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211941 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210652 211941 224 + . alignment_id 22 ; Query gi|350412806|ref|XP_003489770.1| ; Align 210652 296 123 ; Align 211774 337 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 221 Query range: 334 -> 395 Target range: 277548 -> 277731 335 : GluGlnCysGlnLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProA : 354 ..!||||||:!!|||||||||!!::!!||||||||||||||||||||| ! ||||||| ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 355 : spLysAsnIleLeuSerIleIleMetIleIleSerArgSerHisMetGluValLysIl : 373 |||||:!!||||||!:!:!::!!:!:||||||||||||||| !::: :::||||| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 374 : eThrAlaGlyLysIleIleThrMetSerValTyrThrPheGlyAsnIleIleLysThr : 392 |||||||||||||:::||| |||||||||||||||||||||:!!:!! !..! ! eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspValArgSerLeu 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTACGTTCACTT : 277720 393 : ValPheThr : 395 :!!|||||| LeuPheThr 277721 : CTTTTTACA : 277731 vulgar: gi|350412806|ref|XP_003489770.1| 334 395 . KQ414889.1 277548 277731 + 221 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277731 221 + . gene_id 23 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277549 277731 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277731 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277731 221 + . alignment_id 23 ; Query gi|350412806|ref|XP_003489770.1| ; Align 277549 335 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 216 Query range: 335 -> 403 Target range: 264723 -> 265007 336 : GlnCysGlnLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspL : 355 ||||||:!!|||||||||!!::!!|||||||||:!!||||||||| ! |||||| !!| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 356 : ysAsnIleLeuSerIleIleMetIleIleSerArgSerHisMetGluValLysIleTh : 374 ||:!!||||||..!:!:|||:!:||||||! !|||||| !:!!! ! !!|||.!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 375 : rAlaGlyLysIleIleThrMetSerValTyrThrPheGlyAsn >>>> Target I : 389 |||||||||||||:!! !||||||:!!|||||||||.!!:!! 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 390 : ntron 1 >>>> IleIleLysThrValPheThrTyrPheAsnMetLeuArgGlnTh : 403 bp :!!||||||:!! !|||||||||!!.|||:!:||||||||||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArgGlnTh 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGCCAAAC : 265005 404 : r : 403 | r 265006 : G : 265007 vulgar: gi|350412806|ref|XP_003489770.1| 335 403 . KQ414889.1 264723 265007 + 216 M 53 159 5 0 2 I 0 76 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265007 216 + . gene_id 24 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265007 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265007 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265007 216 + . alignment_id 24 ; Query gi|350412806|ref|XP_003489770.1| ; Align 264724 336 159 ; Align 264963 389 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 192 Query range: 335 -> 392 Target range: 238625 -> 238796 336 : GlnCysGlnLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspL : 355 |||||| !|||||||||!!::!!||||||||||||:!!|||||| ! ||||||.!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 356 : ysAsnIleLeuSerIleIleMetIleIleSerArgSerHisMetGluValLysIleTh : 374 :!!..||||||..!:!!|||:!!||||||!.!||||||:!!:!!! ||||||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 375 : rAlaGlyLysIleIleThrMetSerValTyrThrPheGlyAsnIleIleLysThr : 392 ||||||||||:!!:!! !||||||:!!||||||||||||:!!:!!! !:!!||| rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThr 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 238796 vulgar: gi|350412806|ref|XP_003489770.1| 335 392 . KQ414889.1 238625 238796 + 192 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238796 192 + . gene_id 25 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238796 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238796 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238796 192 + . alignment_id 25 ; Query gi|350412806|ref|XP_003489770.1| ; Align 238626 336 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 188 Query range: 299 -> 389 Target range: 301686 -> 302036 300 : GluTrpSerGluHisAsnValGlnAlaMetIleIleTyrValMetValPheLeuSerM : 319 ||||||..!.!. !:!!..! ||||||:!:! !!:! !!! :!!!!. !|||. GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerP 301687 : GAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGT : 301744 320 : etThrPheAsnIlePheLeuIleCysTyrIleGlyGluValLeuLysGluGln >>> : 337 !.|||||||||||||||:!!.!!|||||||||||||||:!!|||...|||||| heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301745 : TCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt... : 301800 338 : > Target Intron 1 >>>> CysGlnLysValGlyAspMetValTyrMetThrA : 348 80 bp |||...:!!:!!|||... !||| !! !: ++CysSerGlnIleGlySerAlaSerTyrGluIleA 301801 : ......................agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCG : 301911 349 : snTrpTyrGlnLeuProAspLysAsnIleLeuSerIleIleMetIleIleSerArgSe : 367 !!||||||.!.||||||! |||!.. !! !..!:!!|||:!::!!! ! !! !|| spTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSe 301912 : ATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATC : 301968 368 : rHisMetGluValLysIleThrAlaGlyLysIleIleThrMetSerValTyrThrPhe : 386 |!!. ! !|||:!!|||||||||||||||||| !:!:|||:!! !!|||||| rGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPhe 301969 : GCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTC : 302025 387 : GlyAsnIle : 389 .!!::!:!! SerSerVal 302026 : AGCTCTGTA : 302036 vulgar: gi|350412806|ref|XP_003489770.1| 299 389 . KQ414889.1 301686 302036 + 188 M 37 111 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301687 302036 188 + . gene_id 26 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301687 302036 188 + . alignment_id 26 ; Query gi|350412806|ref|XP_003489770.1| ; Align 301687 300 111 ; Align 301878 337 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 185 Query range: 334 -> 395 Target range: 283273 -> 283456 335 : GluGlnCysGlnLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProA : 354 ..!||||||:!!|||||||||!!::!!|||||||||||||||! !!:! ! ||||||| ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 355 : spLysAsnIleLeuSerIleIleMetIleIleSerArgSerHisMetGluValLysIl : 373 |||||:!!||||||!:!:!::!!:!:||||||||||||||| !::: :::||||| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 374 : eThrAlaGlyLysIleIleThrMetSerValTyrThrPheGlyAsnIleIleLysThr : 392 |||||||...|||:::||| ||||||!.!|||||||||! !:!!:!! !..! ! eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspValArgSerLeu 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTACGTTCACTT : 283445 393 : ValPheThr : 395 :!!|||||| LeuPheThr 283446 : CTTTTTACA : 283456 vulgar: gi|350412806|ref|XP_003489770.1| 334 395 . KQ414889.1 283273 283456 + 185 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283456 185 + . gene_id 27 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283456 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283456 185 + . alignment_id 27 ; Query gi|350412806|ref|XP_003489770.1| ; Align 283274 335 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 335 -> 403 Target range: 230244 -> 230448 336 : GlnCysGlnLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspL : 355 ||||||::!|||||||||!!:! ! !||||||! !.!.||||||!:!||| !!! ! GlnCysArgLysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyA 230245 : CAGTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAA : 230302 356 : ysAsnIleLeuSerIleIleMetIleIleSerArgSerHisMetGluValLysIleTh : 374 !.!!.! |||!!! !|||:!!||||||:!!! !|||:!! ..!..!|||.!!|| snLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheTh 230303 : ACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTAC : 230359 375 : rAlaGlyLysIleIleThrMetSerValTyrThrPheGlyAsnIleIleLysThrVal : 393 |||||||!!.!!::!! !:!:|||||| !!||||||.!!:!!:!!! !! ! ! !! rAlaGlyAsnMetValGluLeuSerValAsnThrPheSerAspValSerIleIlePhe 230360 : AGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGACGTAAGTATCATATTC : 230416 394 : PheThrTyrPheAsnMetLeuArgGlnThr : 403 ! !..!||| ||| ! !!:! !||| SerValTyrThrAsnProSerLysLeuThr 230417 : TCTGTTTACACGAATCCATCGAAATTAACT : 230448 vulgar: gi|350412806|ref|XP_003489770.1| 335 403 . KQ414889.1 230244 230448 + 127 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230245 230448 127 + . gene_id 28 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230245 230448 . + . KQ414889.1 exonerate:protein2genome:local exon 230245 230448 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230245 230448 127 + . alignment_id 28 ; Query gi|350412806|ref|XP_003489770.1| ; Align 230245 336 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 299 -> 336 Target range: 277371 -> 277482 300 : GluTrpSerGluHisAsnValGlnAlaMetIleIleTyrValMetValPheLeuSerM : 319 |||||||||!!: !:!!||||||.!!|||! !! :!! !!|||:!!.!!:!!|||| GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 320 : etThrPheAsnIlePheLeuIleCysTyrIleGlyGluValLeuLysGluGln : 336 || |||||||||||| !:!!|||||||||||||||:!!|||! |||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAG : 277482 vulgar: gi|350412806|ref|XP_003489770.1| 299 336 . KQ414889.1 277371 277482 + 124 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277482 124 + . gene_id 29 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277482 124 + . alignment_id 29 ; Query gi|350412806|ref|XP_003489770.1| ; Align 277372 300 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 336 -> 394 Target range: 219512 -> 219686 337 : CysGlnLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspLysA : 356 |||:::|||:::|||:::||| !||||||! !.!.||||||!:!||| !!! |||! CysArgLysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysL 219513 : TGtaggaaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGA : 219570 357 : snIleLeuSerIleIleMetIleIleSerArgSerHisMetGluValLysIleThrAl : 375 !.! |||!!!! !:!!:!!! !|||:!!! !|||:!! ..!:!!|||:!:||||| ysLysLeuTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAl 219571 : AAAAGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGC : 219627 376 : aGlyLysIleIleThrMetSerValTyrThrPheGlyAsnIleIleLysThrValPhe : 394 ||||!!.!!::!! !:!!|||:!! !|||||| !:!!:!:! :::||| aGlyAsnMetValGluLeuSerIleSerThrPheThrAspValSerIleLysLeuPhe 219628 : CGGAAATATGGTCGAATTGTCTATCAGCACTTTTACCGACGTGAGtatcaaattattc : 219684 vulgar: gi|350412806|ref|XP_003489770.1| 336 394 . KQ414889.1 219512 219686 + 123 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219513 219686 123 + . gene_id 30 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219513 219686 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219686 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219513 219686 123 + . alignment_id 30 ; Query gi|350412806|ref|XP_003489770.1| ; Align 219513 337 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 296 -> 339 Target range: 264528 -> 264657 297 : IleLeuAlaGluTrpSerGluHisAsnValGlnAlaMetIleIleTyrValMetValP : 316 :!!!!! !||||||..!...|||::::::||| ::: !! !||| !!|||:!!. ValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleL 264529 : GTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATAC : 264586 317 : heLeuSerMetThrPheAsnIlePheLeuIleCysTyrIleGlyGluValLeuLysGl : 335 !.:!!|||||| ! !||||||||||||!!:|||||||||||||||:!!|||! || euIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGl 264587 : TGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGA : 264643 336 : uGlnCysGlnLys : 339 |||| ||| uGlnValIleLys 264644 : Gcaggtaattaaa : 264657 vulgar: gi|350412806|ref|XP_003489770.1| 296 339 . KQ414889.1 264528 264657 + 123 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264529 264657 123 + . gene_id 31 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264529 264657 . + . KQ414889.1 exonerate:protein2genome:local exon 264529 264657 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264529 264657 123 + . alignment_id 31 ; Query gi|350412806|ref|XP_003489770.1| ; Align 264529 297 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 299 -> 338 Target range: 219328 -> 219445 300 : GluTrpSerGluHisAsnValGlnAlaMetIleIleTyrValMetValPheLeuSerM : 319 ||||||!.!..!:!!:!!||| !::! :!:! !|||:!!!!::!!.!!:!!|||: GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 320 : etThrPheAsnIlePheLeuIleCysTyrIleGlyGluValLeuLysGluGlnCysGl : 338 !:|||||||||||||||:::...|||||||||||||||:!!:!! |||||| :: euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGlnValGl 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAggtaga : 219443 339 : n : 338 : u 219444 : a : 219445 vulgar: gi|350412806|ref|XP_003489770.1| 299 338 . KQ414889.1 219328 219445 + 117 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219445 117 + . gene_id 32 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219329 219445 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219445 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219445 117 + . alignment_id 32 ; Query gi|350412806|ref|XP_003489770.1| ; Align 219329 300 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 299 -> 346 Target range: 206050 -> 206191 300 : GluTrpSerGluHisAsnValGlnAlaMetIleIleTyrValMetValPheLeuSerM : 319 ||||||..!.!.:!!|||..! !|||:!:|||:!:|||:!!! !:!! :!!||| GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 320 : etThrPheAsnIlePheLeuIleCysTyrIleGlyGluValLeuLysGluGlnCysGl : 338 |||||| !:!!|||:!!:!!||||||||||||:!!:!!|||! !!:||| !: ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGlnValAr 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAGTGCG : 206165 339 : nLysValGlyAspMetValTyrMet : 346 : ! !! !...||| !|||:!! gAspTyrValSerMetLysTyrVal 206166 : TGATTACGTATCAATGAAGTACGTG : 206191 vulgar: gi|350412806|ref|XP_003489770.1| 299 346 . KQ414889.1 206050 206191 + 110 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206191 110 + . gene_id 33 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206051 206191 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206191 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206191 110 + . alignment_id 33 ; Query gi|350412806|ref|XP_003489770.1| ; Align 206051 300 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 335 -> 389 Target range: 292389 -> 292551 336 : GlnCysGlnLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspL : 355 ||| !!...:!!:!!!.! !! !||| |||.!.||||||.!.|||||| : GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 356 : ysAsnIleLeuSerIleIleMetIleIleSerArgSerHisMetGluValLysIleTh : 374 :!!!. !! !..!|||:!!:!!:!::!!:!!! !!!! ! !:!!|||:!!|| rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 375 : rAlaGlyLysIleIleThrMetSerValTyrThrPheGlyAsnIle : 389 |||||||||||||.!!..!:!:|||:!! !!||||||||| !:!! rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaVal 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTA : 292551 vulgar: gi|350412806|ref|XP_003489770.1| 335 389 . KQ414889.1 292389 292551 + 103 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 292551 103 + . gene_id 34 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292390 292551 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 292551 103 + . alignment_id 34 ; Query gi|350412806|ref|XP_003489770.1| ; Align 292390 336 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1262 Query range: 0 -> 406 Target range: 259721 -> 262201 1 : MetThrAsnLysSerAlaValValGluLysThrPheAspSerLeuGlyAspTyrSerL : 20 |||||||||||||||!.! !!||||||! !!:!||| !|||! !.!!|||||||||| MetThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerL 259722 : ATGACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCC : 259779 21 : euGlnPheAsnArgTrpLeuLeuIleSerIleGlyAlaTrpProAlaSerThrSerTh : 39 |||||||||||||||||!!!|||! ! !!||||||||||||||| !!|||:!!||||| euGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 259780 : TCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCAC : 259836 40 : rSerArgArgGluArgIleIleSerPheIleLeuIleAlaLeuCysTyrGlyPheIle : 58 |!!!|||! !|||!:!||||||||| !!||||||||| !:!!||||||.!! !||| rThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIle 259837 : GACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATA : 259893 59 : LeuPheThrValIleProCysIlePheHisPheIleLeuGluAspGluSerIleTyrM : 78 ||| !!|||:!!|||||||||:!!.!!|||.!.:!!|||||| ! ||||||:!:|||| LeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrM 259894 : CTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACA : 259953 79 : etLysLeuLysValPheGlyProLeuSerHisTrpPheIleGlyGlyIleAsnTyrTh : 97 ||||| !||||||.!!|||||||||!!!|||||||||:!!||| !!||||||||||| etLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrTh 259954 : TGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACAC : 260010 98 : rAsnLeuLeuLeuArgSerAsnGluIleArgAspCysIleHisHisValGlnThrAsp : 116 |!..||||||||||||.!!!..!!:|||! !..!|||:!:.!.||||||:!!!.!||| rThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAsp 260011 : AACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGAT : 260067 117 : TrpLysIleValThrArgProGluAspSerGlnValMetMetLysTyrAlaArgIleG : 136 |||!:!|||:!!|||||| !:!!|||..!.!.||||||:!!!:!||||||!:!.!!| TrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheG 260068 : TGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCG : 260127 137 : lyArgPheIleAlaAlaPheCysAlaThrPheMetGlnGlyGlyValLeuThrTyrCy : 155 |||||!:!:!!||||||! !||||||.!!|||:!!||||||||||||||| !!:!|| lyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCy 260128 : GCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTG : 260184 156 : sValValThrAlaPheAlaThrGlnThrIleGluIleAlaAsnGluThrArgIleIle : 174 |:!!||||||!.!!!.::!|||:!!..!|||:!!:!:!.!|||||||||||||||:!! sLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal 260185 : TTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTT : 260241 175 : ArgMetLeuProCysAlaAlaTyrLysAsnLeuIleProValAspSerSerProMetA : 194 !.!:!!||||||||||||!.!||||||.!.|||||| !|||:!!..!|||||||||| HisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetA 260242 : CATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGA : 260301 195 : snGluIleValLeuAlaThrGlnPheIleSerGlyPheIleValAsnSerSerAlaVa : 213 ||||||||||||||!.!..!||||||:!!||||||||||||||||||||||||.!!|| snGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrVa 260302 : ACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGT : 260358 214 : lAlaIleIleSerIleGlyAlaValPheThrAlaHisAlaTyrGlyGlnLeuThrVal : 232 |!.!|||.!!|||:!!!.!||||||.!.||||||||||||! !|||||||||!.!||| lGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnVal 260359 : TGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTG : 260415 233 : LeuMetArgTrpIleAsnGluPheValAsnArgSerGluAspGlnLysLysSerValG : 252 ||||||..!||||||!..|||||||||:!!..!|||..!:!!::!||||||!.!!.! LeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaP 260416 : CTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTC : 260475 253 : luPheAsnGluIleGlyGluIleValGluHisHisLeuArgIleLeu{Se} >>>> : 268 |||!!.|||||||||! !||||||||||||||||||||| !|||{!!} roPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeu{Th}++ 260476 : CTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC{AC}gt..... : 260527 269 : Target Intron 1 >>>> {r}LeuIleAlaGlyIleGluAsnValLeuThrGln : 279 257 bp {!}!!!|||:!! !!||||||:!!|||:!!!.!!:! ++{r}PheIleSerArgIleGluAspValMetAsnArg 260528 : ....................ag{C}TTCATATCGCGTATCGAGGATGTGATGAACCGG : 260813 280 : PheCysPheMetGluLeuLeuLysSerLysLeuAspIleSerMetLeuGlyTyrTyrI : 299 .!.||||||:!!||||||!!!!:!!!!! |||||||||!!!:!:||||||||||||| IleCysPheLeuGluLeuPheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrI 260814 : ATATGCTTCCTGGAGTTGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATA : 260873 300 : leLeuThr >>>> Target Intron 2 >>>> GluTrpAlaGluHisAspIle : 308 |||||! ! 852 bp ||||||||||||!!.|||||| leLeuMet++ ++GluTrpAlaGluGlnAspIle 260874 : TTCTTATGgt.........................agGAATGGGCTGAGCAAGATATA : 261752 309 : ArgAsnLeuThrThrTyrPheMetIleMetAlaSerMetSerPheAsnIlePheThrV : 328 !:!||||||:!!||||||||||||!!::!! !:!!!!:!!!||||||:!!|||! !: GlnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheIleI 261753 : CAAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAA : 261812 329 : alCysTyrIleGlyAspIleLeuThrGluGln >>>> Target Intron 3 >>> : 339 !!||||||||||||!!:||||||||||||||| 81 bp leCysTyrIleGlyGluIleLeuThrGluGln++ 261813 : TCTGTTACATCGGTGAAATACTAACGGAACAGgt........................ : 261847 340 : > SerLysLysPheGlyAspValValTyrMetThrLysTrpTyrTyrLeuProAsnL : 357 !!!..!||| !!|||||||||||||||||||||!!.|||||||||||||||:!!| ++CysSerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuProAspL 261848 : .agTGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACCTGATA : 261980 358 : ysAspIlePheAspLeuIleLeuIleIleThrArgSerAsnSerAlaIleLysIleTh : 376 ||..!|||.!!||||||||||||||||||.!!|||!.! !!!.!! ! !!.!!! ysSerIleLeuAspLeuIleLeuIleIleAlaArgLysProProGlyAsn***PheLy 261981 : AAAGTATCCTTGATTTGATTTTGATCATTGCACGAAAACCGCCGGGAAATTAGTTCAA : 262037 377 : rAlaGlyLysIleThrHisMetSer{Il} >>>> Target Intron 4 >>>> : 385 !..! ::!.!!|||!.! !:!!{||} 75 bp sCys---ArgPheThrArgSerAla{Il}++ ++ 262038 : ATGT---CGGTTTACACGTTCGGCG{AT}gt.........................ag : 262136 386 : {e}AsnThrPheGlyAspValMetLysThrAlaPheAlaTyrLeuAsnLeuLeuArgG : 404 {|} !.!. !.!.|||:!:|||||||||||||||||||||||||||||||||| {e}ProLeuIlePheGlnValValLysThrAlaPheAlaTyrLeuAsnLeuLeuArgG 262137 : {T}CCGTTGATATTCCAGGTGGTTAAAACTGCTTTCGCGTATCTGAATCTGTTGCGTC : 262193 405 : lnValThr : 406 ||:!!||| lnMetThr 262194 : AAATGACG : 262201 vulgar: gi|350422500|ref|XP_003493182.1| 0 406 . KQ414889.1 259721 262201 + 1262 M 267 801 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 39 117 G 1 0 M 6 18 S 0 2 5 0 2 I 0 71 3 0 2 S 1 1 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259722 262201 1262 + . gene_id 1 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259722 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259722 260524 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262062 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262062 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 262063 262064 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 262063 262137 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 262136 262137 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 262138 262201 . + . KQ414889.1 exonerate:protein2genome:local exon 262138 262201 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259722 262201 1262 + . alignment_id 1 ; Query gi|350422500|ref|XP_003493182.1| ; Align 259722 1 801 ; Align 260783 269 99 ; Align 261734 302 111 ; Align 261926 339 117 ; Align 262043 379 18 ; Align 262139 386 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1229 Query range: 0 -> 406 Target range: 256601 -> 258738 1 : MetThrAsnLysSerAlaValValGluLysThrPheAspSerLeuGlyAspTyrSerL : 20 |||||||||:!!! !|||||||||:!!! !!.!||| ! |||! !.!!|||||||||| MetThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerL 256602 : ATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTC : 256659 21 : euGlnPheAsnArgTrpLeuLeuIleSerIleGlyAlaTrpProAlaSerThrSerTh : 39 |||||!!.|||||||||!!!|||! ! !!||||||||||||||| !!|||:!!||||| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 256660 : TCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCAC : 256716 40 : rSerArgArgGluArgIleIleSerPheIleLeuIleAlaLeuCysTyrGlyPheIle : 58 |!!!! !! !||||||! !:!!|||.!!:!!|||! ! !:!!|||||||||! !||| rThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIle 256717 : TACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATA : 256773 59 : LeuPheThrValIleProCysIlePheHisPheIleLeuGluAspGluSerIleTyrM : 78 |||||||||:!!|||||||||:!:.!!||| ! .!!|||!!:|||!!:|||.!!|||| LeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrM 256774 : TTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAca : 256833 79 : etLysLeuLysValPheGlyProLeuSerHisTrpPheIleGlyGlyIleAsnTyrTh : 97 |||||:::||| |||||||||:!!|||||||||.!!|||.!! !! !|||||||| etLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrTh 256834 : tgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACAC : 256890 98 : rAsnLeuLeuLeuArgSerAsnGluIleArgAspCysIleHisHisValGlnThrAsp : 116 | |||||||||!:!.!!!!.!!:|||||| !!|||:!!.!.|||:!!:!!|||||| rLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAsp 256891 : GTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGAT : 256947 117 : TrpLysIleValThrArgProGluAspSerGlnValMetMetLysTyrAlaArgIleG : 136 |||!:!!!:|||! !||| !:!!|||..!||||||||||||||| !!||||||.!!| TrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheG 256948 : TGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCG : 257007 137 : lyArgPheIleAlaAlaPheCysAlaThrPheMetGlnGlyGlyValLeuThrTyrCy : 155 |||||!:!:!:|||.!!|||||||||.!!.!!||||||.!!||||||... ::: lyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePh 257008 : GTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttctt : 257064 156 : sValValThrAlaPheAlaThrGlnThrIleGluIleAlaAsnGluThrArgIleIle : 174 ||| !:!!|||.!. !|||:!!! !|||.!.:!:!.!|||||||||! !|||:!: eValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleVal 257065 : cgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTG : 257121 175 : ArgMetLeuProCysAlaAlaTyrLysAsnLeuIleProValAspSerSerProMetA : 194 |||:!!|||||| !.!!!.!||||||!!.|||:!: !||||||..!||||||! !| ArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrA 257122 : CGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGA : 257181 195 : snGluIleValLeuAlaThrGlnPheIleSerGlyPheIleValAsnSerSerAlaVa : 213 |||||||||||:!! !! !||| ! |||..!.!!|||!.!!.!!!!|||.!!|| snGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrVa 257182 : ACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGT : 257238 214 : lAlaIleIleSerIleGlyAlaValPheThrAlaHisAlaTyrGlyGlnLeuThrVal : 232 |::!|||.!!|||:!!!.!|||||||||.!!.!!|||||||||||||||||||||||| lSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrVal 257239 : TAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTG : 257295 233 : LeuMetArgTrpIleAsnGluPheValAsnArgSerGluAspGlnLysLysSerValG : 252 |||||| !||||||!..||||||||||||..!|||..!:!!!:::::|||::: LeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheP 257296 : CTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttc : 257355 253 : luPheAsnGluIleGlyGluIleValGluHisHisLeuArgIleLeu{Se} >>>> : 268 |||!!.:!!||||||! !|||||||||||||||||||||:!:|||{||} roPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Se}++ 257356 : ctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt..... : 257407 269 : Target Intron 1 >>>> {r}LeuIleAlaGlyIleGluAsnValLeuThrGln : 279 76 bp {|}!!!|||:!! !||||||.!.|||:!!!.!!:! ++{r}PheIleSerTyrIleGluGluValMetAsnArg 257408 : ....................ag{T}TTCATATCATATATCGAGGAAGTGATGAACCGA : 257512 280 : PheCysPheMetGluLeuLeuLysSerLysLeuAspIleSerMetLeuGlyTyrTyrI : 299 .!.||||||:!:||||||!!!!:!!!!! !|||! !|||!!!|||||||||||||||| IleCysPheLeuGluLeuPheArgCysThrLeuAlaIleCysMetLeuGlyTyrTyrI 257513 : ATATGTTTTTTAGAGTTGTTTAGATGCACGCTGGCTATATGCATGCTGGGATACTACA : 257572 300 : leLeuThr >>>> Target Intron 2 >>>> GluTrpAlaGluHisAspIle : 308 |||||.!! 684 bp ||||||:!! !!..|||||| leLeuAla++ ++GluTrpSerThrGlnAspIle 257573 : TTCTTGCGgt.........................aggaATGGTCTACGCaagatatt : 258283 309 : ArgAsnLeuThrThrTyrPheMetIleMetAlaSerMetSerPheAsnIlePheThrV : 328 :::||||||::::::||||||||||||:!: !|||:::|||||||||||||||...: GlnAsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValI 258284 : caaaatttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaa : 258343 329 : alCysTyrIleGlyAspIleLeuThrGluGln >>>> Target Intron 3 >>> : 339 ::||||||||||||!!:||||||||||||||| 90 bp leCysTyrIleGlyGluIleLeuThrGluGln++ 258344 : tatgttACATAGGTGAAATATTAACAGAACAGgt........................ : 258378 340 : > SerLysLysPheGlyAspValValTyrMetThrLysTrpTyrTyrLeuProAsnL : 357 !!!|||||| !!||||||||||||||||||||| ! |||||||||||||||:!!| ++CysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspL 258379 : .agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACA : 258520 358 : ysAspIlePheAspLeuIleLeuIleIleThrArgSerAsnSerAlaIleLysIleTh : 376 || |||.!!||||||||||||:!!|||.!!||||||!:! !!.!:!!:!!||||| ysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleTh 258521 : AAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCAC : 258577 377 : rAlaGlyLysIleThrHisMetSerIleAsnThrPheGlyAsp >>>> Target I : 391 ||||||||||... |||||||||||| !!||||||.!!||| 69 rAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAsp++ 258578 : CGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATgt............. : 258624 392 : ntron 4 >>>> ValMetLysThrAlaPheAlaTyrLeuAsnLeuLeuArgGlnVa : 405 bp |||!!:||||||:!!||||||||||||||||||||||||||||| ++ValIleLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnVa 258625 : ............agGTAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGT : 258733 406 : lThr : 406 |:!! lSer 258734 : ATCG : 258738 vulgar: gi|350422500|ref|XP_003493182.1| 0 406 . KQ414889.1 256601 258738 + 1229 M 267 801 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256602 258738 1229 + . gene_id 2 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256602 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256602 257404 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256602 258738 1229 + . alignment_id 2 ; Query gi|350422500|ref|XP_003493182.1| ; Align 256602 1 801 ; Align 257482 269 99 ; Align 258265 302 111 ; Align 258466 339 156 ; Align 258691 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1073 Query range: 0 -> 301 Target range: 266586 -> 267558 1 : MetThrAsnLysSerAlaValValGluLysThrPheAspSerLeuGlyAspTyrSerL : 20 |||.!!|||:!!||| !|||:!!||| !!.!.!.:!!||||||.!!|||||||||| MetAlaAsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerL 266587 : ATGGCTAACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCC : 266644 21 : euGlnPheAsnArgTrpLeuLeuIleSerIleGlyAlaTrpProAlaSerThrSerTh : 39 |||||!!.|||||||||!!!|||! ! !!||||||||||||||| !!! !:!! !|| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuTh 266645 : TGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCAC : 266701 40 : rSerArgArgGluArgIleIleSerPheIleLeuIleAlaLeuCysTyrGlyPheIle : 58 ||||!:!! !|||||||||:!!|||!:! !||||||!.!:!!|||||| !!! !||| rSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIle 266702 : ATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATA : 266758 59 : LeuPheThrValIleProCysIlePheHisPheIleLeuGluAspGluSerIleTyrM : 78 |||||||||||||||||||||:!:||||||.!!:!!|||||||||||||||||| !! LeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgT 266759 : CTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTA : 266818 79 : etLysLeuLysValPheGlyProLeuSerHisTrpPheIleGlyGlyIleAsnTyrTh : 97 !|||:!!||||||||||||||||||||||||||||||:!!||||||||||||||||| hrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrTh 266819 : CGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACAC : 266875 98 : rAsnLeuLeuLeuArgSerAsnGluIleArgAspCysIleHisHisValGlnThrAsp : 116 |!..|||||||||||||||!!.|||||||||! !|||:!!.!.|||:!!||||||||| rThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAsp 266876 : CACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGAT : 266932 117 : TrpLysIleValThrArgProGluAspSerGlnValMetMetLysTyrAlaArgIleG : 136 |||!:!|||||||||||||||||||||!.!|||||||||:!!||| !!|||||||||| TrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleG 266933 : TGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCG : 266992 137 : lyArgPheIleAlaAlaPheCysAlaThrPheMetGlnGlyGlyValLeuThrTyrCy : 155 |||||!:!|||||| !|||||||||.!!||||||||| !!||||||||| !||||| lyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCy 266993 : GTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTG : 267049 156 : sValValThrAlaPheAlaThrGlnThrIleGluIleAlaAsnGluThrArgIleIle : 174 ||||:!!|||||||||.!!! !||||||:!:|||:!!!.!|||||||||||||||:!! sValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleVal 267050 : TGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTA : 267106 175 : ArgMetLeuProCysAlaAlaTyrLysAsnLeuIleProValAspSerSerProMetA : 194 !.!:!!||||||||||||!.!||||||!!.:!!||| !!||||||!!!||||||! !| HisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrA 267107 : CATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGA : 267166 195 : snGluIleValLeuAlaThrGlnPheIleSerGlyPheIleValAsnSerSerAlaVa : 213 ||||||||||||||!.!:!!||||||:!!||||||||||||||||||||||||!.!|| snGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValVa 267167 : ACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGT : 267223 214 : lAlaIleIleSerIleGlyAlaValPheThrAlaHisAlaTyrGlyGlnLeuThrVal : 232 |!.! !.!!|||:!!!.!|||||||||.!!|||||||||! !|||||||||!:!||| lGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerVal 267224 : CGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTG : 267280 233 : LeuMetArgTrpIleAsnGluPheValAsnArgSerGluAspGlnLysLysSerValG : 252 ||||||! !||||||!!.||||||||||||||||||..!|||...!!.|||!:!||| LeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValC 267281 : CTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTT : 267340 253 : luPheAsnGluIleGlyGluIleValGluHisHisLeuArgIleLeu{Se} >>>> : 268 |||:!!:!!||||||! !:!!||||||||||||||||||:!!|||{||} ysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 267341 : GCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG}gt..... : 267392 269 : Target Intron 1 >>>> {r}LeuIleAlaGlyIleGluAsnValLeuThrGln : 279 69 bp {|}!!!|||||| !!||||||!:!|||:!!!:!:!! ++{r}PheIleAlaArgIleGluSerValMetSerGlu 267393 : ....................ag{C}TTCATAGCACGTATCGAAAGTGTAATGAGCGAA : 267490 280 : PheCysPheMetGluLeuLeuLysSerLysLeuAspIleSerMetLeuGlyTyrTyrI : 299 .!!|||||||||||||||!!!|||!!!! :!!||||||!!!:!!|||.!!||||||| IleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSerTyrTyrI 267491 : ATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCTATTATA : 267550 300 : leLeuThr : 301 |||||||| leLeuThr 267551 : TCCTTACG : 267558 vulgar: gi|350422500|ref|XP_003493182.1| 0 301 . KQ414889.1 266586 267558 + 1073 M 267 801 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266587 267558 1073 + . gene_id 3 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266587 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266587 267389 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267558 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267558 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266587 267558 1073 + . alignment_id 3 ; Query gi|350422500|ref|XP_003493182.1| ; Align 266587 1 801 ; Align 267460 269 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1061 Query range: 0 -> 301 Target range: 274329 -> 275309 1 : MetThrAsnLysSerAlaVal<->ValGluLysThrPheAspSerLeuGlyAspTyrS : 19 |||||||||!!.!!!|||:!! ||| !!.!||||||||||||.!!||||||| MetThrAsnAsnCysAlaIleAsnValThrAlaAsnPheAspSerLeuSerAspTyrS 274330 : ATGACAAACAACTGTGCGATAAACGTAACTGCGAATTTCGACAGTCTCAGCGACTACA : 274387 20 : erLeuGlnPheAsnArgTrpLeuLeuIleSerIleGlyAlaTrpProAlaSerThrSe : 38 ||||||||!!.|||||||||!!!|||! !!||||||||||||||| !:!!:!! ! erLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaSerPr 274388 : GCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCC : 274444 39 : rThrSerArgArgGluArgIleIleSerPheIleLeuIleAlaLeuCysTyrGlyPhe : 57 !|||!!!!:! !|||||||||:!!||| !:::|||||| ||||||||| !!||| oThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCysPhe 274445 : CACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTGCTTC : 274501 58 : IleLeuPheThrValIleProCysIlePheHisPheIleLeuGluAspGluSerIleT : 77 ||||||! !|||||||||||| !!|||||||||.!!||||||! !|||||||||:!!: IleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGluSerLeuH 274502 : ATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGTCTCC : 274561 78 : yrMetLysLeuLysValPheGlyProLeuSerHisTrpPheIleGlyGlyIleAsnTy : 96 !!:!!|||||||||:!!.!!|||||||||.!!|||||||||||||||||||||||||| isLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTy 274562 : ATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTA : 274618 97 : rThrAsnLeuLeuLeuArgSerAsnGluIleArgAspCysIleHisHisValGlnThr : 115 ||||!..|||||||||||||||!!.|||||||||! !|||:!:.!.|||:!!|||||| rThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThr 274619 : CACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACA : 274675 116 : AspTrpLysIleValThrArgProGluAspSerGlnValMetMetLysTyrAlaArgI : 135 ||||||!:!|||||||||||||||||||||..!|||||||||:!!||| !!|||!:!| AspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsnAlaLysI 274676 : GATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGA : 274735 136 : leGlyArgPheIleAlaAlaPheCysAlaThrPheMetGlnGlyGlyValLeuThrTy : 154 ||||||||!:!:!!||| !|||||||||.!!||||||||| !!||||||||| !|| leGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuCysTy 274736 : TCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTA : 274792 155 : rCysValValThrAlaPheAlaThrGlnThrIleGluIleAlaAsnGluThrArgIle : 173 |||||||:!!|||||||||.!!! !||||||:!!:!!:!!!.!||||||||||||! ! rCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrArgThr 274793 : TTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACC : 274849 174 : IleArgMetLeuProCysAlaAlaTyrLysAsnLeuIleProValAspSerSerProM : 193 :!:!.!|||||||||||| !|||||||||!!.:!!:!! !!||||||!!!||||||! ValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThrSerProT 274850 : GTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGA : 274909 194 : etAsnGluIleValLeuAlaThrGlnPheIleSerGlyPheIleValAsnSerSerAl : 212 !||||||||||||||||||:!!||||||:!:|||||||||||||||||||||||||| hrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerSerAl 274910 : CGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGC : 274966 213 : aValAlaIleIleSerIleGlyAlaValPheThrAlaHisAlaTyrGlyGlnLeuThr : 231 ||||!.! !.!!|||:!!!.!|||||||||.!!|||||||||||||||||||||!:! aValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSer 274967 : GGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGC : 275023 232 : ValLeuMetArgTrpIleAsnGluPheValAsnArgSerGluAspGlnLysLysSerV : 251 |||||||||! !||||||!.!||||||||||||!.!|||..!||||||...|||:::| ValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsnLysAsnV 275024 : GTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaaaatg : 275083 252 : alGluPheAsnGluIleGlyGluIleValGluHisHisLeuArgIleLeu{Se} >> : 268 || |||::!|||||||||! !:!!||||||||||||||||||:!!|||{||} alTyrPheSerGluIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 275084 : tttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTC{AG}gt.. : 275138 269 : >> Target Intron 1 >>>> {r}LeuIleAlaGlyIleGluAsnValLeuThr : 278 74 bp {|}!!!|||||| !!||||||:!!|||:!!!.! ++{r}PheIleAlaArgIleGluAspValMetAsn 275139 : .......................ag{T}TTCATAGCACGTATCGAGGATGTGATGAAT : 275238 279 : GlnPheCysPheMetGluLeuLeuLysSerLysLeuAspIleSerMetLeuGlyTyrT : 298 !:!.!.|||||||||||||||!!!|||!!!! ||||||!!:!!!||||||||||||| ArgIleCysPheMetGluLeuPheLysCysThrLeuAspMetCysMetLeuGlyTyrT 275239 : CGAATATGCTTCATGGAATTGTTCAAGTGTACTCTGGATATGTGCATGCTTGGCTATT : 275298 299 : yrIleLeuThr : 301 ||||||||||| yrIleLeuThr 275299 : ACATTCTCACG : 275309 vulgar: gi|350422500|ref|XP_003493182.1| 0 301 . KQ414889.1 274329 275309 + 1061 M 7 21 G 0 3 M 260 780 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274330 275309 1061 + . gene_id 4 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274330 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274330 275135 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275309 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275309 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274330 275309 1061 + . alignment_id 4 ; Query gi|350422500|ref|XP_003493182.1| ; Align 274330 1 21 ; Align 274354 8 780 ; Align 275211 269 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 831 Query range: 9 -> 267 Target range: 262825 -> 263599 10 : LysThrPheAspSerLeuGlyAspTyrSerLeuGlnPheAsnArgTrpLeuLeuIleS : 29 :!!!:!|||! !||||||.!!|||||||||||||||.!.|||||||||||||||! ! GluSerPheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysP 262826 : GAAAGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAAC : 262883 30 : erIleGlyAlaTrpProAlaSerThrSerThrSerArgArgGluArgIleIleSerPh : 48 !!||||||||||||||| !|||.!!|||! !||||||! !||||||||||||!!!|| roIleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPh 262884 : CGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTT : 262940 49 : eIleLeuIleAlaLeuCysTyrGlyPheIleLeuPheThrValIleProCysIlePhe : 67 |:!!||||||!.!:!!|||||| !!.!!||||||! !||||||||||||! !|||.!! eLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeu 262941 : TCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTT : 262997 68 : HisPheIleLeuGluAspGluSerIleTyrMetLysLeuLysValPheGlyProLeuS : 87 |||.!!:!!||||||! !|||!:!.!!:!!|||||||||:!!|||.!!|||||||||. HisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuG 262998 : CATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCG : 263057 88 : erHisTrpPheIleGlyGlyIleAsnTyrThrAsnLeuLeuLeuArgSerAsnGluIl : 106 !!!!.||||||:!!||| !|||||||||||| |||||||||!.!|||!!.!!:|| lyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIl 263058 : GTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATAT : 263114 107 : eArgAspCysIleHisHisValGlnThrAspTrpLysIleValThrArgProGluAsp : 125 |!:!! !|||:!:!!.||||||||| !|||||| |||||||||||| !|||||| eGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAsp 263115 : ACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGAT : 263171 126 : SerGlnValMetMetLysTyrAlaArgIleGlyArgPheIleAlaAlaPheCysAlaT : 145 ..!!:::!!|||:!!||| !!|||!:! !||||||!:!:!:||||||! !||||||! GlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaI 263172 : CAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGA : 263231 146 : hrPheMetGlnGlyGlyValLeuThrTyrCysValValThrAlaPheAlaThrGlnTh : 164 !||||||||| !.!!:!!:!! ! ! |||:!!||||||||||||.!!||||||.. lePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnVa 263232 : TCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGT : 263288 165 : rIleGluIleAlaAsnGluThrArgIleIleArgMetLeuProCysAlaAlaTyrLys : 183 !|||||| !!.!|||||||||||||||:!!||||||||||||||| !!!.!|||||| lIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLys 263289 : GATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAA : 263345 184 : AsnLeuIleProValAspSerSerProMetAsnGluIleValLeuAlaThrGlnPheI : 203 .!.:!!||||||||||||!!!!:!|||! !||||||||| !!|||||||||||||||: GluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheL 263346 : GAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTC : 263405 204 : leSerGlyPheIleValAsnSerSerAlaValAlaIleIleSerIleGlyAlaValPh : 222 !:|||||||||||||||!.!:!!!!!.!!|||!.! !.!!.!!!!: !|||||||| euSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPh 263406 : TGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTT : 263462 223 : eThrAlaHisAlaTyrGlyGlnLeuThrValLeuMetArgTrpIleAsnGluPheVal : 241 |.!!!.!||||||! !|||||||||!.!||||||||| !||||||!..||||||||| eAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheVal 263463 : CGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTG : 263519 242 : AsnArgSerGluAspGlnLysLysSerValGluPheAsnGluIleGlyGluIleValG : 261 |||!:!|||..!|||:!!!!.|||!:!:!! ! |||!.!|||||||||! !||||||| AsnGlnSerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValG 263520 : AACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTG : 263579 262 : luHisHisLeuArgIleLeu : 267 ||||||||||||||:!!||| luHisHisLeuArgValLeu 263580 : AACATCATCTGAGAGTTCTG : 263599 vulgar: gi|350422500|ref|XP_003493182.1| 9 267 . KQ414889.1 262825 263599 + 831 M 258 774 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262826 263599 831 + . gene_id 5 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262826 263599 . + . KQ414889.1 exonerate:protein2genome:local exon 262826 263599 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262826 263599 831 + . alignment_id 5 ; Query gi|350422500|ref|XP_003493182.1| ; Align 262826 10 774 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 699 Query range: 1 -> 299 Target range: 236804 -> 237760 2 : ThrAsnLysSerAlaValValGluLysThrPheAspSerLeuGlyAspTyrSerLeuG : 21 !.!:!!|||!!!!.!|||..!|||! !.!.!. !:!! !.!!||||||||||||| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuG 236805 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCC : 236862 22 : lnPheAsnArgTrpLeuLeuIleSerIleGlyAlaTrpProAlaSerThrSerThrSe : 40 ||!::||||||||| !:!!! !|||||||||.!!|||||| !! !:!!|| lnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpPro------GlnPheSerSe 236863 : AGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCA------CAGTTCTCGTC : 236913 41 : rArgArgGluArgIleIleSerPheIleLeuIleAlaLeuCysTyrGlyPheIleLeu : 59 |!.!! !||||||! !|||||| ||||||! !!.!:!!|||||| ! |||||| rAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeu 236914 : GAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTA : 236970 60 : PheThrValIleProCysIlePheHisPheIleLeuGluAspGluSerIleTyrMetL : 79 |||:!!:!!||||||||| !!.|||.!.!!:|||||| ! ! !!!!.!!|||! !| PheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrL 236971 : TTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGA : 237030 80 : ysLeuLysValPheGlyProLeuSerHisTrpPheIleGlyGlyIleAsnTyrThrAs : 98 ||:!!|||:!!.!!||| !!|||||||||||| ! .!! !! !|||!:!||||||! ysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMe 237031 : AAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCAT : 237087 99 : nLeuLeuLeuArgSerAsnGluIleArgAspCysIleHisHisValGlnThrAspTrp : 117 |||||||||||| !!!!. |||||| !!! !.!!:!!|||:!!:!!||||||||| tLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrp 237088 : GCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGG : 237144 118 : LysIleValThrArgProGluAspSerGlnValMetMetLysTyrAlaArgIleGlyA : 137 !:!! ..!|||||| ||| ...:::||||||:!!|||||||||!:!.!!.!!| ArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerA 237145 : AGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTC : 237204 138 : rgPheIleAlaAlaPheCysAlaThrPheMetGlnGlyGlyValLeuThrTyrCysVa : 156 ||!:! ||| !! !|||.!!! !|||!!:!!.||||||:!!||| !|||||||| rgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysVa 237205 : GATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGT : 237261 157 : lValThrAlaPheAlaThrGlnThrIleGluIleAlaAsnGluThrArgIleIleArg : 175 |:!!||||||! !.!!|||..!..!:!!! !:!!!.!|||:!!|||! !|||:!:||| lMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLeuArg 237262 : TATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGC : 237318 176 : MetLeuProCysAlaAlaTyrLysAsnLeuIleProValAspSerSerProMetAsnG : 195 :!!||||||! !! !||||||...|||:!!|||||||||!!!!:! !!||||||! ValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnA 237319 : GTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACG : 237378 196 : luIleValLeuAlaThrGlnPheIleSerGlyPheIleValAsnSerSerAlaValAl : 214 !:||||||:!! !:!!||||||:!!||||||||||||!.!|||!:!||||||:!!:: spIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSe 237379 : ACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAG : 237435 215 : aIleIleSerIleGlyAlaValPheThrAlaHisAlaTyrGlyGlnLeuThrValLeu : 233 !:!!||||||:!! !::!!.!.!.|||:!!||||||! !|||||||||!:!|||:!! rValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValVal 237436 : TGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTT : 237492 234 : MetArgTrpIleAsnGluPheValAsnArgSerGluAspGlnLysLysSerValGluP : 253 ||| !! !|||.!.!!:||||||!:!..!:!!..! !::! !|||..!! !.!.| MetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAspHisP 237493 : ATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATCATT : 237552 254 : heAsnGluIleGlyGluIleValGluHisHisLeuArgIleLeu{Se} >>>> Tar : 268 ||:!!|||||| ! !|||||||||.!.|||||||||:!:|||{!:} heAspGluIleProThrIleValGluGluHisLeuArgValLeu{As}++ 237553 : TCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTG{AA}gt........ : 237601 269 : get Intron 1 >>>> {r}LeuIleAlaGlyIleGluAsnValLeuThrGlnPhe : 280 68 bp {!}!!!|||:!! !!|||||| :!!:!!!.!:!! ++{n}PheIleSerArgIleGluAlaMetMetAsnLysAla 237602 : .................ag{C}TTCATATCGCGCATAGAGGCAATGATGAACAAAGCG : 237701 281 : CysPheMetGluLeuLeuLysSerLysLeuAspIleSerMetLeuGlyTyrTyrIle : 299 ||||||:!!||||||:!!!:!!!!! !:!!! !:!!!!! ||||||||||||||| CysPheLeuGluLeuMetArgCysMetIleAlaValCysAlaLeuGlyTyrTyrIle 237702 : TGTTTCCTGGAGTTAATGAGGTGCATGATAGCTGTATGCGCACTTGGATATTATATA : 237760 vulgar: gi|350422500|ref|XP_003493182.1| 1 299 . KQ414889.1 236804 237760 + 699 M 33 99 G 2 0 M 231 693 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236805 237760 699 + . gene_id 6 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 236805 237598 . + . KQ414889.1 exonerate:protein2genome:local exon 236805 237598 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 237599 237600 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 237599 237666 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 237665 237666 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 237667 237760 . + . KQ414889.1 exonerate:protein2genome:local exon 237667 237760 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 236805 237760 699 + . alignment_id 6 ; Query gi|350422500|ref|XP_003493182.1| ; Align 236805 2 99 ; Align 236904 37 693 ; Align 237668 269 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 673 Query range: 16 -> 391 Target range: 232456 -> 235147 17 : AspTyrSerLeuGlnPheAsnArgTrpLeuLeuIleSerIleGlyAlaTrpProAlaS : 36 !!:||||||:!!||| ! |||||||||!!!|||! ! !!!!:|||||||||||| ! GluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgV 232457 : GAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTG : 232514 37 : erThrSerThrSerArgArgGluArgIleIleSerPheIleLeuIleAlaLeuCysTy : 55 !|||..!||||||||| !:!!!:!:!!:!!:!! :!:|||! ! ! !|||:! alThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHi 232515 : TTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCA : 232571 56 : rGlyPheIleLeuPheThrValIleProCysIlePheHisPheIleLeuGluAspGlu : 74 !..!.!.!!::!!! !:!!:!!:!!|||||||||.!. !.!!:!:!!!|||||| ! sSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThr 232572 : TTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACG : 232628 75 : SerIleTyrMetLysLeuLysValPheGlyProLeuSerHisTrpPheIleGlyGlyI : 94 |||:!! ! !:!:!!||| !.!!||||||:!!||||||!::.!.!!:|||! !: SerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluL 232629 : AGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAAT : 232688 95 : leAsnTyrThrAsnLeuLeuLeuArgSerAsnGluIleArgAspCysIleHisHisVa : 113 !:|||||| ! !|||||| !!:!:!!|||!!:|||! ! !!|||:!:.!.!!.|| euAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnVa 232689 : TGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGT : 232745 114 : lGlnThrAspTrpLysIleValThrArgProGluAspSerGlnValMetMetLysTyr : 132 |:!! !||||||::!! !|||! !!:!|||! !! !!.!.:!!|||:!!||| !! lLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsn 232746 : GAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAAC : 232802 133 : AlaArgIleGlyArgPheIleAlaAlaPheCysAlaThrPheMetGlnGlyGlyValL : 152 |||!:!:!!||||||! ||||||..!.!!..!||| !! !|||!!. !|||||| AlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValG 232803 : GCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCG : 232862 153 : euThrTyrCysValValThrAlaPheAlaThrGlnThrIleGluIleAlaAsnGluTh : 171 !:!! !! :!!||||||!.!.!! !! !...|||.!! ! :!:!.!||||||!: lySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSe 232863 : GCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAG : 232919 172 : rArgIleIleArgMetLeuProCysAlaAlaTyrLysAsnLeuIleProValAspSer : 190 ! ! !!: ! !|||||||||.!! !|||! !!!.|||!!: !..! ! ! rTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPhe 232920 : TTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTC : 232976 191 : SerProMetAsnGluIleValLeuAlaThrGlnPheIleSerGlyPheIleValAsnS : 210 ||||||! !|||||||||:!!!!!!.! !|||! !:!!||||||||||||||||||| SerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnS 232977 : AGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACT : 233036 211 : erSerAlaValAlaIleIleSerIleGlyAlaValPheThrAlaHisAlaTyrGlyGl : 229 || !.!!|||!.! ! !.!!:!!|||||||||.!..!! !||||||! !||||| erValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGl 233037 : CCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACA : 233093 230 : nLeuThrValLeuMetArgTrpIleAsnGluPheValAsnArgSerGluAspGlnLys : 248 ||||!.!|||:!!||| ! :!::!!!!:!!.|||:!! :!!:!!! |||:!! nLeuAsnValValMetSerLysLeuAspAspLeuValAsp---AlaLysGlyGlnGlu 233094 : GCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGAC---GCGAAAGGGCAGGAG : 233147 249 : LysSerValGluPheAsnGluIleGlyGluIleValGluHisHisLeuArgIleLeu{ : 268 :!!!!!|||! ! !..:!!:!!||| |||||||||||||||||||||! !|||{ GluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeu{ 233148 : GAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTA{ : 233207 269 : Se} >>>> Target Intron 1 >>>> {r}LeuIleAlaGlyIleGluAsnVa : 276 ||} 1495 bp {|}||| !!.!..!||| ||||| Se}++ ++{r}LeuAlaValAsnIle---AsnVa 233208 : AG}gt.........................ag{T}CTTGCAGTTAATATC---AATGT : 234723 277 : lLeuThrGlnPheCysPheMetGluLeuLeuLysSerLysLeuAspIleSerMetLeu : 295 | ! !||| ! !:: ..! ::: ::::::...||| ! lAsnGluGlnSerThrTrpAspArgTyrThrGluIlePheIleGluPheSerArgAsn 234724 : TAACGAACAAAGTACATGGGATCGGtacactgaaattttcatcgaattttcgCGTAAC : 234780 296 : GlyTyr<->TyrIleLeuThrGluTrpAlaGluHisAspIleArgAsnLeuThrThrT : 314 ..!! ! !:!! ! ! !||| ! ... ......|||.!!:!!| SerLeuCysLysCysIleLeuThrSerGlnGluLysSerLysGluLysLeuAlaSerT 234781 : TCTTTATGCAAATGTATTTTAACTTCTCAGGAAAAgtcgaaggaaaaattagCTTCAT : 234840 315 : yrPheMetIleMetAlaSerMetSerPheAsnIlePheThrValCysTyrIleGlyAs : 333 || !!!!::!: !.!||||||!!!|||||||||||| ||||||||||||!! yrValIleValTyrValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGl 234841 : ACGTCATCGTGTACGTGTCCATGACATTtaatatattcatattttgttACATCGGAGA : 234897 334 : pIleLeuThrGluGln >>>> Target Intron 2 >>>> SerLysLysPheG : 343 :! |||||||||||| 74 bp !!!! ||| !!| uThrLeuThrGluGln++ ++CysThrLysValG 234898 : GACGCTTACAGAGCAGgt.........................agTGTACCAAAGTCG : 235001 344 : lyAspValValTyrMetThrLysTrpTyrTyrLeuProAsnLysAspIlePheAspLe : 362 ||!!: !||||||||||||:!!|||||| ||||||:!!||| ! !.!!! !|| lyGluLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLe 235002 : GAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTT : 235058 363 : uIleLeuIleIleThrArgSerAsnSerAlaIleLysIleThrAlaGlyLysIleThr : 381 |:!!:!!||||||:!!||||||!:!! !!.!|||||||||||||||||||||.!! ! uValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheLeu 235059 : GGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTA : 235115 382 : HisMetSerIleAsnThrPheGlyAspVal : 391 !!.||||||:!! ||||||||||||||| GlnMetSerValAlaThrPheGlyAspVal 235116 : CAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: gi|350422500|ref|XP_003493182.1| 16 391 . KQ414889.1 232456 235147 + 673 M 226 678 G 1 0 M 24 72 S 0 2 5 0 2 I 0 1491 3 0 2 S 1 1 M 5 15 G 1 0 M 23 69 G 0 3 M 41 123 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232457 235147 673 + . gene_id 7 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232457 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232457 233208 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234703 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234702 234703 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234704 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234704 234914 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232457 235147 673 + . alignment_id 7 ; Query gi|350422500|ref|XP_003493182.1| ; Align 232457 17 678 ; Align 233135 244 72 ; Align 234705 269 15 ; Align 234720 275 69 ; Align 234792 298 123 ; Align 234989 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 618 Query range: 0 -> 406 Target range: 284472 -> 287338 1 : MetThrAsnLysSerAlaValValGluLysThrPheAspSerLeuGlyAspTyrSerL : 20 |||.!! !!!:!! !..!!!:..!|||!::|||!!! ! !! ||||||: MetAlaLeuValThrSerSerThrAspSerThrTrpAspThrAspTrpMetTyrSerV 284473 : ATGGCACTGGTCACTTCTTCAACCGATTCGACGTGGGACACGGATTGGATGTACAGCG : 284530 21 : euGlnPheAsnArgTrpLeuLeuIleSerIleGlyAlaTrpProAlaSerThrSerTh : 39 !!|||.!.|||||||||!!!|||! ! !!||||||!.!|||||| !||| !!!!.. alGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuCysVa 284531 : TACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGT : 284587 40 : rSerArgArgGluArgIleIleSerPheIleLeuIleAlaLeuCysTyrGlyPheIle : 58 !!!!! ! !|||!:!|||! !||| ! :!!||| !:!! !!! ! !.!.||| lThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIle 284588 : GACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATA : 284644 59 : LeuPheThrValIleProCysIlePheHisPheIleLeuGluAspGlu<->SerIleT : 77 !||| !:!!:!!|||||| !.!. ! :!:|||!!: ! ..!:!! GlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuA 284645 : GGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCG : 284704 78 : yrMetLysLeuLysValPheGlyProLeuSerHisTrpPheIleGlyGlyIleAsnTy : 96 !!! !|||:!!|||:!!.!!|||||||||||| !!! .!.!!:!.!!.!|||!!.|| spThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleLysTy 284705 : ACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTA : 284761 97 : rThrAsnLeuLeuLeuArgSerAsnGluIleArgAspCysIleHisHisValGlnThr : 115 | !! !|||:!!! !|||.!!..!:!!||| !!.!.|||:!: ! !!:!!!::.!! rTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIleArgAla 284762 : TTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCG : 284818 116 : AspTrpLysIleVal<-><-><->ThrArgProGluAspSerGlnValMetMetLysT : 132 ||||||...:!!..! !::::: |||::: ::::::|||! ! ! AspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMetArgAspS 284819 : GACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACA : 284878 133 : yrAlaArgIleGlyArgPheIleAlaAlaPheCysAlaThrPheMetGlnGlyGlyVa : 151 !|||||||||||||||! !:!:||| !||||||||| !|||||| ! ..!|||! erAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGl 284879 : GCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGG : 284935 152 : lLeuThrTyrCysValValThrAlaPheAlaThrGlnThrIleGluIleAlaAsnGlu : 170 !!!! !||| !..!|||! ! !!!!...!||| ! !! |||||| ! !!: yPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIle---Asp 284936 : ATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCATC---GAC : 284989 171 : ThrArgIleIleArgMetLeuProCysAlaAlaTyrLysAsnLeuIleProValAspS : 190 !.!..!! !:!:||| ! ! !!! ! !! !|||:::..!|||:!! ! ! !! AsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgT 284990 : AACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTA : 285049 191 : erSerProMetAsnGluIleValLeuAlaThrGlnPheIleSerGlyPheIleValAs : 209 !!|||||| ! !|||||||||! ! !! !|||! !:!::!!!.!|||:!!:!! ! hrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTy 285050 : CCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATA : 285106 210 : nSerSerAlaValAlaIleIleSerIleGlyAlaValPheThrAlaHisAlaTyrGly : 228 !||| !.!!|||!.! ! !|||:!:!.!|||||||||..! !|||!.!! !||| rSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGly 285107 : CTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGA : 285163 229 : GlnLeuThrValLeuMetArgTrpIleAsnGluPheValAsnArgSerGluAspGlnL : 248 |||!!!! !:!!|||:!!! ! !:!::!!:!!.!!|||:!! !! !:!!! ::!| GlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLysGlyArgL 285164 : CAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGAGGA : 285223 249 : ys<->LysSerValGluPheAsnGluIleGlyGluIleValGluHisHisLeuArgIl : 266 || !|||..!.!. .!...!:!:|||!!:|||:!!||||||||||||!:!|| ysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLysIl 285224 : AGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGAT : 285280 267 : eLeu{Se} >>>> Target Intron 1 >>>> {r}LeuIleAlaGlyIleGlu : 274 ||||{.!} 1411 bp {!}!!!|||:!! !|||||| eLeu{Gl}++ ++{y}PheIleSerGlnIleGlu 285281 : ACTG{GG}gt.........................ag{T}TTTATATCGCAAATCGAG : 286715 275 : AsnValLeuThrGlnPheCysPheMetGluLeuLeuLysSerLysLeuAspIleSerM : 294 ...:!!|||!.!:!!.!.||||||:!:|||:!!:!! !!!! !|||:!!|||!!!. GlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsnIleCysP 286716 : GGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCT : 286775 295 : etLeuGlyTyrTyrIleLeuThr >>>> Target Intron 2 >>>> GluTrp : 303 !.||||||||||||:!!|||||| 80 bp |||||| heLeuGlyTyrTyrLeuLeuThr++ ++GluTrp 286776 : TTTTGGGATATTATTTACTGACGgt.........................agGAATGG : 286882 304 : AlaGluHisAspIleArgAsnLeuThrThrTyrPheMetIleMetAlaSerMetSerP : 323 ! !:!! !!!:! !! !... !! !||||||! !! !:!::!!!.!|||.!.!!!| GluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerPheThrP 286883 : GAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCACGT : 286942 324 : heAsnIlePheThrValCysTyrIleGlyAspIleLeuThrGluGln >>>> Targ : 339 |||||:!!|||! !:!!||||||||||||!!:||||||:!!|||||| heAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286943 : TCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt......... : 286992 340 : et Intron 3 >>>> SerLysLysPheGlyAspValValTyrMetThrLysTrpT : 352 74 bp !! !||| !!||| !..!||||||! ! ! |||| ++CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpT 286993 : ................agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGT : 287103 353 : yrTyrLeuProAsnLysAspIlePheAspLeuIleLeuIleIleThrArgSerAsnSe : 371 || !||||||...||| ! ! !||||||||||||.!!.!! !|||||||| yrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSe 287104 : ATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTC : 287160 372 : rAlaIleLysIleThrAlaGlyLysIleThrHisMetSerIleAsnThrPheGlyAsp : 390 |:!!||||||:!!|||||||||||||||! ! !!:!:|||:!!!:!!:!||| !!..! rSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSer 287161 : TTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGC : 287217 391 : >>>> Target Intron 4 >>>> ValMetLysThrAlaPheAlaTyrLeuAs : 400 71 bp |||:!!|||:!!|||||||||||||||!: ++ ++ValLeuLysSerAlaPheAlaTyrLeuSe 287218 : gt.........................agGTGTTGAAATCGGCATTCGCATATCTGAG : 287318 401 : nLeuLeuArgGlnValThr : 406 !||||||||| !:!!||| rLeuLeuArgThrLeuThr 287319 : CTTATTACGTACGCTAACC : 287338 vulgar: gi|350422500|ref|XP_003493182.1| 0 406 . KQ414889.1 284472 287338 + 618 M 74 222 G 0 3 M 46 138 G 0 9 M 48 144 G 1 0 M 79 237 G 0 3 M 19 57 S 0 2 5 0 2 I 0 1407 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284473 287338 618 + . gene_id 8 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284473 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284473 285287 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286698 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287220 287221 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 287220 287290 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287289 287290 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 287291 287338 . + . KQ414889.1 exonerate:protein2genome:local exon 287291 287338 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284473 287338 618 + . alignment_id 8 ; Query gi|350422500|ref|XP_003493182.1| ; Align 284473 1 222 ; Align 284698 75 138 ; Align 284845 121 144 ; Align 284989 170 237 ; Align 285229 249 57 ; Align 286700 269 99 ; Align 286879 302 111 ; Align 287064 339 156 ; Align 287291 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 527 Query range: 4 -> 400 Target range: 226891 -> 230433 5 : SerAlaValValGluLysThrPheAspSerLeuGlyAspTyrSerLeuGlnPheAsnA : 24 ||| !!.!..!|||!!. !!:!.!...!! ! !:!! |||:!!|||!!.|||| SerLeuAlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnA 226892 : TCTCTCGCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATC : 226949 25 : rgTrpLeuLeuIleSerIleGlyAlaTrpProAlaSerThrSerThrSerArgArgGl : 43 |||||||||||! ! !!:!!||| !||||||:!!||| !!.!!:!||||||! !! rgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGl 226950 : GTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGG : 227006 44 : uArgIleIleSerPheIleLeuIleAlaLeuCysTyrGlyPheIleLeuPheThrVal : 62 !||| !.!!|||!:::!::!! ! !|||||||||!.!.!.!!: !||| !:!! yArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeu 227007 : AAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTG : 227063 63 : IleProCysIlePheHisPheIleLeuGluAspGluSerIleTyrMetLysLeuLysV : 82 :!! !! !! !!!.:!! ! :!!||||||! :!!.!! !|||! ! !||||||: ValSerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysM 227064 : GTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAA : 227123 83 : alPheGlyProLeuSerHisTrpPheIleGlyGlyIleAsnTyrThrAsnLeuLeuLe : 101 !!.!!||||||:!!||| !!:: !!:..! !:!!!!.|||:!!! ||| !!! etIleGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPh 227124 : TGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTT : 227180 102 : uArgSerAsnGluIleArgAspCysIleHisHisValGlnThrAspTrpLysIleVal : 120 !!.!..!:!!!!:|||! !!!:|||:!!.!.!..:!!:!! !|||||||||! !:!! eHisGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIle 227181 : CCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATC : 227237 121 : ThrArgProGluAspSerGlnValMetMetLysTyrAlaArgIleGlyArgPheIleA : 140 ! ! !! !||||||!!!.!.||||||:!!! !|||||| ! !|||||| :!: ArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuI 227238 : AGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGA : 227297 141 : laAlaPheCysAlaThrPheMetGlnGlyGlyValLeuThrTyrCysValValThrAl : 159 !.!!.!!|||.!! !|||:!: ...... ::: ::: :!!|||..! ! leThrIleCysThrPhePheValPheSerSerPheValPhePheTyrIleValValPr 227298 : TCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACC : 227354 160 : aPheAlaThrGlnThrIleGluIleAlaAsnGluThrArgIleIleArgMetLeuPro : 178 !.!! !.!! !!:!:!!! !! ! !:!!! !!.!!.!! ! !! !..!:!!||| oIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetPro 227355 : TATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCG : 227411 179 : CysAlaAlaTyrLysAsnLeuIleProValAspSerSerProMetAsnGluIleValL : 198 ! ! !! ! |||! !:!! ! !||| !! !||||||.!.||||||||| !!! PheProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIlePheP 227412 : TTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCT : 227471 199 : euAlaThrGlnPheIleSerGlyPheIleValAsnSerSerAlaValAlaIleIleSe : 217 !!:!!..!||||||:!!!!!|||.!!:!::!!:!!.!! !.!! !||| ! !|| heSerValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSe 227472 : TTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAG : 227528 218 : rIleGlyAlaValPheThrAlaHisAlaTyrGlyGlnLeuThrValLeuMetArgTrp : 236 |!!:!.!|||:!!.!!.!!!.!||||||! !||||||:!! !||||||:!! !||| rMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrp 227529 : TATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGG : 227585 237 : IleAsnGluPheValAsnArgSerGluAspGlnLysLysSerValGluPheAsnGluI : 256 :!:....!.!!.:!!:!! !!!!!! !|||..!!..|||!!!:!!!!: :!!..!| LeuGlyHisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAsp---AspArgI 227586 : CTGGGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGAT---GATAGAA : 227642 257 : leGlyGluIleValGluHisHisLeuArgIleLeuSerLeuIleAlaGlyIleGluAs : 275 ||!.!...|||||| ||||||:!!|||||||||!.!! !:!!.!! !!||| ! leAlaSerIleValThrHisHisValArgIleLeuLysCysValThrCysIleTyrLe 227643 : TCGCTAGCATCGTCACTCACCACGTTCGAATATTGAAGTGTGTAACGTGTATCTATTT : 227699 276 : nValLeuThrGlnPheCysPheMetGluLeuLeuLys<->SerLysLeuAspIleSer : 293 :!!! ! !.!.! ! !.!.:::...... ::: |||!:!|||! ! !!:! uLeuTyrArgAsp***PheLeuLeuAsnPheAsnGlnTyrSerArgLeuAlaTyrAsn 227700 : GTTGTATCGTGATTAATTTCTcttgaattttaatcaatACAGCAGACTAGCTTATAAC : 227756 294 : MetLeuGlyTyrTyrIleLeuThr >>>> Target Intron 1 >>>> GluTr : 303 !||| ! ! !:! ||| ! 465 bp ||||| AlaLeuTyrGluPheAlaLeuGlu+- ++GluTr 227757 : GCGTTGTATGAATTCGCGTTAGAGga.........................agGAATG : 228251 304 : pAlaGluHisAspIleArgAsnLeuThrThrTyrPheMetIleMetAlaSerMetSer : 322 | ! ! ! !!::!!! ! ! !..!||||||! !:!!:!: !|||.!.!:: pAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerPheThr 228252 : GAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCTTTAcc : 228308 323 : PheAsnIlePheThrValCysTyrIleGlyAspIleLeuThrGluGln >>>> Tar : 339 |||||||||||| ||||||||||||!!:|||:!!.!!|||!!. PheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluHis++ 228309 : ttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACgt........ : 228361 340 : get Intron 2 >>>> SerLysLysPheGlyAspValValTyrMetThrLysTrp : 351 1889 bp !!!!:!||| !!|||!!: ! !||||||! !:!!||| ++CysArgLysValGlyGluLysSerTyrMetIleGluTrp 228362 : .................agTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGG : 230284 352 : TyrTyrLeuProAsnLysAspIlePheAspLeuIleLeuIleIleThrArgSerAsnS : 371 ||| ||| !!...!!. ! ! .!! !! !||||||||||||.!!! !||||||! TyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnC 230285 : TACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATT : 230344 372 : erAlaIleLysIleThrAlaGlyLysIleThrHisMetSerIleAsnThrPheGlyAs : 390 !!:!!! |||.!!|||||||||!!.!!:..!.!.:!:|||:!!|||||||||.!!|| ysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnThrPheSerAs 230345 : GCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGA : 230401 391 : pValMetLysThrAlaPheAlaTyrLeuAsn : 400 ||||! ! ! ! !! !!.!||| !||| pValSerIleIlePheSerValTyrThrAsn 230402 : CGTAAGTATCATATTCTCTGTTTACACGAAT : 230433 vulgar: gi|350422500|ref|XP_003493182.1| 4 400 . KQ414889.1 226891 230433 + 527 M 248 744 G 1 0 M 34 102 G 0 3 M 14 42 5 0 2 I 0 461 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226892 230433 527 + . gene_id 9 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226892 227782 . + . KQ414889.1 exonerate:protein2genome:local exon 226892 227782 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 227783 227784 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 227783 228247 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226892 230433 527 + . alignment_id 9 ; Query gi|350422500|ref|XP_003493182.1| ; Align 226892 5 744 ; Align 227636 254 102 ; Align 227741 288 42 ; Align 228248 302 111 ; Align 230248 339 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 460 Query range: 2 -> 306 Target range: 212827 -> 214576 3 : AsnLysSerAlaValValGluLysThrPheAspSerLeuGlyAspTyrSerLeuGlnP : 22 .!.|||! ! !|||! !!!: |||!:!!!:!.!! ::: |||::: !! GluLysLeuGlnValGluAspCysThrTyrGluLysArgValAsnLeuSerIleProT 212828 : GAGAAATTGCAGGTCGAAGACTGTACCTACGAGAAACGtgtaaatttaagtatacCGT : 212885 23 : heAsnArgTrpLeuLeuIleSerIleGlyAlaTrpProAlaSerThrSerThrSerAr : 41 ::|||||||||||||||! ! !!! ||| !||||||! !!.!:!!! !..!|||! rpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspLysSerTyrValSerPr 212886 : GGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCTACGTTTCACC : 212942 42 : gArgGluArgIleIleSerPheIleLeuIleAlaLeuCysTyrGlyPheIleLeuPhe : 60 !! !|||!:!! !|||:!! :!::!!! !.!!:!!|||||||||!!.||| !!:! oIleGluLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyr 212943 : GATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTAC : 212999 61 : ThrValIleProCysIlePheHisPheIleLeuGluAspGluSerIleTyrMetLysL : 80 !||||||||||||! !!!.:!! ! .!!|||!!:! |||:::|||::: :::: LeuValIleProCysSerLeuTyrValPheLeuAspValGluAsnIlePheLysGluI 213000 : CTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaagaga : 213059 81 : euLysValPheGlyProLeuSerHisTrpPheIleGlyGlyIleAsnTyrThrAsnLe : 99 !!:!!:!!|||||| !!!!:!! !!! ! !!.! ! !!.||| !:::|| leGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLe 213060 : TCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTT : 213116 100 : uLeuLeuArgSerAsnGluIleArgAspCysIleHisHisValGlnThrAspTrpLys : 118 |:!!|||!.!.!!:!!!!:|||||| |||:!!.!.|||:!!:!! !||||||||| uIleLeuHisGlyAspAspIleArgThrCysValGluHisMetLysTyrAspTrpLys 213117 : GATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAG : 213173 119 : IleValThrArgProGluAspSerGlnValMetMetLysTyrAlaArgIleGlyArgP : 138 ! !:!!|||!.! !||||||!.!:!!:!!||| ! ! !!|||!!!.!!|||!:! AsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysA 213174 : AATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGA : 213233 139 : heIleAlaAlaPheCysAlaThrPheMetGlnGlyGlyValLeuThrTyrCysValVa : 157 |||!.!.!!.!!|||||| !|||||| ! !||| !! ! !|||! !:!!|| rgIleValThrIleCysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuVa 213234 : GGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGT : 213290 158 : lThrAlaPheAlaThrGlnThrIleGluIleAlaAsnGluThrArgIleIleArgMet : 176 |..! !!.!!::!.!!.!.! !!!:! ! ! !:!! !.! !! !.!!|||... lValProIleSerAlaAspLysMetValAlaGluAspLeuAsnValThrPheArgGln 213291 : CGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAA : 213347 177 : LeuProCysAlaAlaTyrLysAsnLeuIleProValAspSerSerProMetAsnGluI : 196 :!! ! ! !!!.!! !:! !:!!:!! !||| ! !||||||:!!||||||| MetValValProValSerArgPheIleValAspValArgTyrSerProValAsnGluI 213348 : ATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGA : 213407 197 : leValLeuAlaThrGlnPheIleSerGlyPheIleValAsnSerSerAlaValAlaIl : 215 || !!!!! !! !|||.!!|||:!!||| ! :!::!!:!!:!!! !||||||!.! lePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAl 213408 : TATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGC : 213464 216 : eIleSerIleGlyAlaValPheThrAlaHisAlaTyrGlyGlnLeuThrValLeuMet : 234 ! !|||:!:!.!|||||||||.!!!.!||||||! !||||||:!! !:!!|||||| aCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMet 213465 : TTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATG : 213521 235 : ArgTrpIleAsnGluPheValAsnArgSerGluAspGlnLysLysSerValGluPheA : 254 !!!|||:!:.!..!.!!.:!!:!! !!!!!||||||..!!..|||!:!|||!!: : SerTrpLeuGluHisLeuIleAspGlyArgGluAspMetSerLysAsnValAsp---A 213522 : AGCTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGCAAGAATGTGGAC---G : 213578 255 : snGluIleGlyGluIleValGluHisHisLeuArgIleLeu{Se} >>>> Target : 268 !!..!|||!.!! ||||||.!.!!.|||:!!|||||||||{!.} 8 spArgIleAlaValIleValAsnGlnHisValArgIleLeu{Ly}++ 213579 : ACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTG{AA}gt........... : 213624 269 : Intron 1 >>>> {r}LeuIleAlaGlyIleGluAsnValLeuThrGlnPheCys : 281 40 bp {!}!!!:!!! ! !:!:|||!!.!.!||| !||| ! ! ! ++{s}PheLeuGluLeuValGluLysAlaLeuArgGlnValSer 213625 : ..............ag{A}TTCTTAGAGCTCGTGGAGAAAGCACTTCGGCAAGTATCT : 214499 282 : PheMetGluLeuLeuLysSerLysLeuAspIleSerMetLeuGlyTyrTyrIleLeuT : 301 ||| ||||||||| !!!!! !:!!:!!:!!!!!:!::!!||||||||||||:!!| PheAlaGluLeuLeuValCysThrValAsnLeuCysLeuValGlyTyrTyrIleIleT 214500 : TTCGCTGAATTATTAGTATGCACGGTGAATCTCTGTCTCGTTGGATATTACATAATAA : 214559 302 : hrGluTrpAlaGluHis : 306 ||! !!! ! ||| hrValCysArgGlyHis 214560 : CGGTATGCAGAggacat : 214576 vulgar: gi|350422500|ref|XP_003493182.1| 2 306 . KQ414889.1 212827 214576 + 460 M 250 750 G 1 0 M 14 42 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212828 214576 460 + . gene_id 10 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212828 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 212828 213621 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214576 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214576 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212828 214576 460 + . alignment_id 10 ; Query gi|350422500|ref|XP_003493182.1| ; Align 212828 3 750 ; Align 213578 254 42 ; Align 214463 269 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 413 Query range: 3 -> 270 Target range: 221336 -> 222134 4 : LysSerAlaValValGluLysThrPheAspSerLeuGlyAspTyrSerLeuGlnPheA : 23 ...|||.!! !|||||| ! !!:! ! !!! !! ! ! ! |||:!!|||!!.! SerSerThrArgValGluTyrAspTyrLysThrAsnValLysLeuSerValGlnLeuS 221337 : TCTTCGACTCGTGTTGAATACGATTACAAGACGAACGTGAAATTGAGCGTGCAATTGA : 221394 24 : snArgTrpLeuLeuIleSerIleGlyAlaTrpProAlaSerThrSerThrSerArgAr : 42 :!||||||:!!|||! !!||||||!.!|||||| !|||.!!!:!! !|||! ! erArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaAsnIleSerThrVa 221395 : GCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGT : 221451 43 : gGluArgIleIleSerPheIleLeuIleAlaLeuCysTyrGlyPheIleLeuPheThr : 61 !|||||| !:!!! !!:::!::!!! !!.!:!!||||||.!!.!.||| !||| ! lGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLeuIleThrPheLeu 221452 : AGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTC : 221508 62 : ValIleProCysIlePheHisPheIleLeuGluAspGluSerIleTyrMetLysLeuL : 81 :!!:!!||||||! !.!!:!! ! |||||||||! |||..!:!!|||! !:!:!!| LeuValProCysSerLeuTyrValIleLeuGluValGluAspValTyrAsnArgIleL 221509 : TTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCA : 221568 82 : ysValPheGlyProLeuSerHisTrpPheIleGlyGlyIleAsnTyrThrAsnLeuLe : 100 ||:!!!!.|||||||||||| !!! ! !!:!.! !:!!!!.||| ! |||:! ysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIl 221569 : AATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGAT : 221625 101 : uLeuArgSerAsnGluIleArgAspCysIleHisHisValGlnThrAspTrpLysIle : 119 !||| !..!|||!!:||||||!!:||||||.!.!.!:!!:!! !|||||||||! ! eLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTrpAspTrpLysAsn 221626 : ACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAAT : 221682 120 : ValThrArgProGluAspSerGlnValMetMetLysTyrAlaArgIleGlyArgPheI : 139 :!!||| ! !!:!!|||!.!.!.:!!|||!!::!! !!|||! !.!!|||||| : IleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgL 221683 : ATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGAT : 221742 140 : leAlaAlaPheCysAlaThrPheMetGlnGlyGlyValLeuThrTyrCysValValTh : 158 !: ! !.!!|||.!! !|||||| ! .!!||| ::: ||| ::!!.!! euIleMetIleCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIl 221743 : TGATCATGATCTGCACATTTTTCATGTACAGTggtttcgttttttattacatAGCCAT : 221799 159 : rAlaPheAlaThrGlnThrIleGluIleAlaAsnGluThrArgIleIleArgMetLeu : 177 ! !!|||::!..! ! !||| !:!! ... ... :!! eProPheSerValGlyLysIleProAlaGlnAspValAsnValThrPheIleProMet 221800 : ACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATG : 221856 178 : ProCysAlaAlaTyrLysAsnLeuIleProValAspSerSerProMetAsnGluIleV : 197 !! ! !! !! !:! !:!!:!! !..! ! !||||||:!:|||||||||: ValPheProPheSerArgPheIleValAspThrArgTyrSerProValAsnGluIleL 221857 : GTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTC : 221916 198 : alLeuAlaThrGlnPheIleSerGlyPheIleValAsnSerSerAlaValAlaIleIl : 216 !!!!!:!! !|||.!!!!::!!||| !:!::!!:!!|||! !.!! !||| ! euPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCy 221917 : TGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTG : 221973 217 : eSerIleGlyAlaValPheThrAlaHisAlaTyrGlyGlnLeuThrValLeuMetArg : 235 !|||:!:! !|||:!!|||.!!!.!||||||! !||||||:!! !|||||||||!!! sSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSer 221974 : CAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGC : 222030 236 : TrpIleAsnGluPheValAsnArgSerGluAspGlnLysLysSerValGluPheAsnG : 255 |||:!:!!..!.!!.:!!||| !! !!! !|||..! !!.!:!|||!!: !... TrpLeuLysHisLeuIleAsnGlyArgAlaAspMetCysAsnAsnValAsp---ArgA 222031 : TGGCTGAAACATTTGATCAACGGCCGGGCGGATATGTGTAACAACGTGGAT---AGGA : 222087 256 : luIleGlyGluIleValGluHisHisLeuArgIleLeuSerLeuIle : 270 .!|||!.!:!!||||||.!.!!.|||:!!|||||||||..!! !:!! rgIleAlaLysIleValAsnGlnHisValArgIleLeuGlnTyrVal 222088 : GAATAGCGAAGATTGTGAATCAACACGTTCGAATATTGCAGTATGTA : 222134 vulgar: gi|350422500|ref|XP_003493182.1| 3 270 . KQ414889.1 221336 222134 + 413 M 249 747 G 1 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221337 222134 413 + . gene_id 11 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221337 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221337 222134 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221337 222134 413 + . alignment_id 11 ; Query gi|350422500|ref|XP_003493182.1| ; Align 221337 4 747 ; Align 222084 254 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 411 Query range: 16 -> 270 Target range: 217171 -> 217930 17 : AspTyrSerLeuGlnPheAsnArgTrpLeuLeuIleSerIleGlyAlaTrpProAlaS : 36 ::: |||:!!|||!::|||||||||||||||! ! !!!!:||| !|||||| !| AsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnS 217172 : aatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACT : 217229 37 : erThrSerThrSerArgArgGluArgIleIleSerPheIleLeuIleAlaLeuCysTy : 55 || !!!!|||!!!||| !..!!:!|||:!!! ! :!::!!! !||||||||||| erArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTy 217230 : CACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTA : 217286 56 : rGlyPheIleLeuPheThrValIleProCysIlePheHisPheIleLeuGluAspGlu : 74 ||||!!.||| !||| ! !!:!!|||||| !.!.:!! ! .!!||||||! !||| rGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeuGluValGlu 217287 : CGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAA : 217343 75 : SerIleTyrMetLysLeuLysValPheGlyProLeuSerHisTrpPheIleGlyGlyI : 94 ..!:!!||| |||||||||:!!||||||||||||! ! !!! ! !!:!.! !: AspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValMetAlaPheV 217344 : GATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCG : 217403 95 : leAsnTyrThrAsnLeuLeuLeuArgSerAsnGluIleArgAspCysIleHisHisVa : 113 !!!!.||| !::!|||:!!:!!!.!!.! !!:||||||!!:|||:!:......:! alLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCysValArgArgIl 217404 : TCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAAT : 217460 114 : lGlnThrAspTrpLysIleValThrArgProGluAspSerGlnValMetMetLysTyr : 132 !:!! !||||||!:!! !|||! ! !! !:!!|||!!!:!!!.!|||!!: ! !! eGluArgAspTrpArgAsnValArgCysGluLysAspArgGluAlaMetIleValAsn 217461 : CGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAAC : 217517 133 : AlaArgIleGlyArgPheIleAlaAlaPheCysAlaThrPheMetGlnGlyGlyValL : 152 |||!.!.!!|||||| :!:!.! !.!!|||.!! !|||||| ! .!!||| : AlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheV 217518 : GCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcg : 217577 153 : euThrTyrCysValValThrAlaPheAlaThrGlnThrIleGluIleAlaAsnGluTh : 171 :: ||| ::!!.!! ! !!.!!::!..! !! !||| ! ! !|||! !!. alPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGluAsnGlyAs 217578 : ttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAA : 217634 172 : rArgIleIleArgMetLeuProCysAlaAlaTyrLysAsnLeuIleProValAspSer : 190 !! !! !.!!! ! !||| !! ! !! ! ||| !!:!!||| !..! !! ! nLeuThrPheIleProLeuValPheProPheThrLysTyrIleIleAspThrArgTyr 217635 : CCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTAC : 217691 191 : SerProMetAsnGluIleValLeuAlaThrGlnPheIleSerGlyPheIleValAsnS : 210 !!!|||! !||||||||||||!!! ! !|||!!.|||:!!||| !:!::!!:!!. ThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisG 217692 : ACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACG : 217751 211 : erSerAlaValAlaIleIleSerIleGlyAlaValPheThrAlaHisAlaTyrGlyGl : 229 !!! !.!! !||| ! !|||:!:!.!|||!.!|||.!!!.!||||||! !||||| lyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGl 217752 : GAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCA : 217808 230 : nLeuThrValLeuMetArgTrpIleAsnGluPheValAsnArgSerGluAspGlnLys : 248 |:!! !|||||||||!.!|||:!:.!..!.!!.:!!:!! !!!!!! !|||..!!.. nIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgAlaAspMetSer 217809 : GATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGAGCGGATATGAGC : 217865 249 : LysSerValGluPheAsnGluIleGlyGluIleValGluHisHisLeuArgIleLeuS : 268 ! !!!|||!!: ..!..!|||!.!...||||||...!!.|||:!!|||||||||! AspThrValAsp---GlyArgIleAlaSerIleValSerGlnHisValArgIleLeuL 217866 : GATACTGTGGAT---GGTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTAA : 217922 269 : erLeuIle : 270 .!! !:!! ysCysVal 217923 : AGTGTGTA : 217930 vulgar: gi|350422500|ref|XP_003493182.1| 16 270 . KQ414889.1 217171 217930 + 411 M 236 708 G 1 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217172 217930 411 + . gene_id 12 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217172 217930 . + . KQ414889.1 exonerate:protein2genome:local exon 217172 217930 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217172 217930 411 + . alignment_id 12 ; Query gi|350422500|ref|XP_003493182.1| ; Align 217172 17 708 ; Align 217880 254 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 368 Query range: 301 -> 406 Target range: 277371 -> 277842 302 : GluTrpAlaGluHisAspIleArgAsnLeuThrThrTyrPheMetIleMetAlaSerM : 321 ||||||:!!!!: !|||:!!!:!!..:!!||||||:!!|||||||||:!: !|||| GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 322 : etSerPheAsnIlePheThrValCysTyrIleGlyAspIleLeuThrGluGln >>> : 339 || ||||||||||||||||||||||||||||||!!:||||||||||||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 340 : > Target Intron 1 >>>> SerLysLysPheGlyAspValValTyrMetThrL : 350 72 bp !!!|||||| !!|||!!:|||||||||||||||! ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 351 : ysTrpTyrTyrLeuProAsnLysAspIlePheAspLeuIleLeuIleIleThrArgSe : 369 !.|||||||||||||||:!!|||||||||.!!:!!|||:!!|||||||||:!!||||| snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 370 : rAsnSerAlaIleLysIleThrAlaGlyLysIleThrHisMetSerIleAsnThrPhe : 388 |!:! ...|||||||||||||||||||||::: ...||||||:!: !!|||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 389 : GlyAsp >>>> Target Intron 2 >>>> ValMetLysThrAlaPheAlaTy : 398 |||||| 84 bp |||!!:||||||.!!|||||||| GlyAsp++ ++ValIleLysThrThrPheAlaTy 277703 : GGCGATgt.........................agGTAATAAAAACCACTTTCgcgta : 277816 399 : rLeuAsnLeuLeuArgGlnValThr : 406 |||||||:::|||||||||..!||| rLeuAsnIleLeuArgGlnThrThr 277817 : tttaaatattctacgCCAAACGACG : 277842 vulgar: gi|350422500|ref|XP_003493182.1| 301 406 . KQ414889.1 277371 277842 + 368 M 37 111 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277842 368 + . gene_id 13 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277842 368 + . alignment_id 13 ; Query gi|350422500|ref|XP_003493182.1| ; Align 277372 302 111 ; Align 277555 339 156 ; Align 277795 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 367 Query range: 301 -> 406 Target range: 272836 -> 273302 302 : GluTrpAlaGluHisAspIleArgAsnLeuThrThrTyrPheMetIleMetAlaSerM : 321 ||||||.!!!!:||||||.!!!:!!:!|||||||||||||||||||||:!: !|||| GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 322 : etSerPheAsnIlePheThrValCysTyrIleGlyAspIleLeuThrGluGln >>> : 339 ||:::|||||||||||| |||||||||||||||!!:||||||||||||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 340 : > Target Intron 1 >>>> SerLysLysPheGlyAspValValTyrMetThrL : 350 70 bp ||||||...|||!!:|||||||||||||||! ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 351 : ysTrpTyrTyrLeuProAsnLysAspIlePheAspLeuIleLeuIleIleThrArgSe : 369 !.|||||||||||||||..!|||||||||.!!||||||||||||||||||:!!|||!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 370 : rAsnSerAlaIleLysIleThrAlaGlyLysIleThrHisMetSerIleAsnThrPhe : 388 !!:! !!.!||||||||||||||||||!:!|||..!! !||||||:!: !!|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 389 : GlyAsp >>>> Target Intron 2 >>>> ValMetLysThrAlaPheAlaTy : 398 |||||| 81 bp |||||||||!:!||||||||||| GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 399 : rLeuAsnLeuLeuArgGlnValThr : 406 |||||||:!!|||||||||..!||| rLeuAsnMetLeuArgGlnThrThr 273277 : CTTAAATATGCTACGACAAACGACA : 273302 vulgar: gi|350422500|ref|XP_003493182.1| 301 406 . KQ414889.1 272836 273302 + 367 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273302 367 + . gene_id 14 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273302 367 + . alignment_id 14 ; Query gi|350422500|ref|XP_003493182.1| ; Align 272837 302 111 ; Align 273018 339 156 ; Align 273255 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 355 Query range: 1 -> 267 Target range: 208164 -> 208959 2 : ThrAsnLysSerAlaValValGluLysThrPheAspSerLeuGlyAspTyrSerLeuG : 21 |||! !:!..! ! !!:!!.!.!:!!.!!:! ! !:! ! !..!!:!!:!:!!! ThrMetArgGlnIlePheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValA 208165 : ACGATGAGACAAATATTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTC : 208222 22 : lnPheAsnArgTrpLeuLeuIleSerIleGlyAlaTrpProAlaSerThrSerThrSe : 40 ::.!.||| !||| !|||! ! !||||||:!!|||||| !|||! !..! !|| rgLeuAsnValTrpThrLeuLysIleIleGlySerTrpProArgSerIleAspArgSe 208223 : GTCTGAACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTC : 208279 41 : rArgArgGluArgIleIleSerPheIleLeuIleAlaLeuCysTyrGlyPheIleLeu : 59 | !! !|||!.!! ! !.!!:!!|||! !!.!||| !!:!! !!!!.:!! ! rTrpLeuGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGly 208280 : CTGGTTAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGT : 208336 60 : PheThrValIleProCysIlePheHisPheIleLeuGluAspGluSerIleTyrMetL : 79 |||! !||||||||| ! !.!. ! ||||||! !! !|||..!.!!||| : PheIleValIleProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspG 208337 : TTCATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACC : 208396 80 : ysLeuLysValPheGlyProLeuSerHisTrpPheIleGlyGlyIleAsnTyrThrAs : 98 !!||||||:!!! !.!! !!|||||| !!::.!.!!:!.! !! !!.|||..!! lnLeuLysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIl 208397 : AATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGAT : 208453 99 : nLeuLeuLeuArgSerAsnGluIleArgAspCysIleHisHisValGlnThrAspTrp : 117 !:!! !:!!|||..!..!!!:|||||| ! |||:!!.!.:!!|||:!!.!!|||||| eMetThrValArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrp 208454 : CATGACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGG : 208510 118 : LysIleValThrArgProGluAspSerGlnValMetMetLysTyrAlaArgIleGlyA : 137 !:!! !||| !!.! !||||||!!!:!!:!!|||:!! ! !!|||!!!.!!!.!| ArgAsnValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaA 208511 : AGAAACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCA : 208570 138 : rgPheIleAlaAlaPheCysAlaThrPheMetGlnGlyGlyValLeuThrTyrCysVa : 156 || :!: !!.!.!.|||!.!.!!|||||| ! |||||||||::: ||| :! rgLysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIl 208571 : GGAAACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaT : 208627 157 : lValThrAlaPheAlaThrGlnThrIleGluIleAlaAsnGluThrArgIleIleArg : 175 !!.! ! !!.!!.!! !.!.! !:!!! ! !..!! !.! !! !||| eAlaLeuProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArg 208628 : CGCTTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGA : 208684 176 : MetLeuProCysAlaAlaTyrLysAsnLeuIleProValAspSerSerProMetAsnG : 195 ! !||| !! ! !!!.! !||| !:!!:!: !||| ! !||||||:!!|||| ArgLeuValTyrProValProLysPheIleLeuAspValArgTyrSerProValAsnG 208685 : AGGCTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATG : 208744 196 : luIleValLeuAlaThrGlnPheIleSerGlyPheIleValAsnSerSerAlaValAl : 214 ||||| !!! !.!!..!|||!!.:!:|||||||||:!!!.!:!!!:!! !.!!|||!. luIlePheTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGl 208745 : AGATTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGG : 208801 215 : aIleIleSerIleGlyAlaValPheThrAlaHisAlaTyrGlyGlnLeuThrValLeu : 233 ! ! !.!!:!:!.!|||:!!.!!.!! !||||||! !||||||||| !:!!||| yAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeu 208802 : GGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTG : 208858 234 : MetArgTrpIleAsnGluPheValAsnArgSerGluAspGlnLysLysSerValGluP : 253 ||| !|||!!:.!.:!!!!.|||:!! !! !!||||||:!!:!!|||!:!:!!!!: MetSerTrpMetGluLysLeuValAspGlyArgGluAspGluGluLysAsnLeuAsp- 208859 : ATGTCCTGGATGGAGAAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGAT- : 208918 254 : heAsnGluIleGlyGluIleValGluHisHisLeuArgIleLeu : 267 .!...!:!:!.!.!.|||||||||!!.|||:!!|||:!::!! --GlnArgLeuAlaAsnIleValGluGlnHisValArgValIle 208919 : --CAGAGGTTGGCTAATATCGTGGAGCAGCATGTTCGAGTGATC : 208959 vulgar: gi|350422500|ref|XP_003493182.1| 1 267 . KQ414889.1 208164 208959 + 355 M 251 753 G 1 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208165 208959 355 + . gene_id 15 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208165 208959 . + . KQ414889.1 exonerate:protein2genome:local exon 208165 208959 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208165 208959 355 + . alignment_id 15 ; Query gi|350422500|ref|XP_003493182.1| ; Align 208165 2 753 ; Align 208918 254 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 335 Query range: 17 -> 267 Target range: 303196 -> 304866 18 : TyrSerLeuGlnPheAsnArgTrpLeuLeuIleSerIleGlyAlaTrpProAlaSerT : 37 ||| ! !:!! !!:!!:!|||:!!|||! |||:!!||| !||||||||| ! TyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTrpProAlaValL 303197 : TACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTGGCCAGCCGTGT : 303254 38 : hrSerThrSerArgArgGluArgIleIleSerPheIleLeuIleAlaLeuCysTyrGl : 56 !..! !!!! ! ! !!.!!:!! !! ||| !|||!.!||| !! !! euAspGluThr------AlaGlyPheLeuProLysIleThrIleGlyLeuSerAsnLe 303255 : TGGACGAAACC------GCAGGATTCCTACCAAAAATCACCATTGGACTCAGTAATTT : 303305 57 : yPheIleLeuPheThrValIleProCysIlePheHisPheIleLeuGluAspGluSer : 75 ! !!:!!||||||||||||||||||||||||.!.|||.!.|||!!!|||.!.:!!..! uValLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnLysAsp 303306 : GGTTCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAAAGGAT : 303362 76 : IleTyrMetLysLeuLysValPheGlyProLeuSerHisTrpPheIleGlyGlyIleA : 95 ! !!:!:!||||||:!!||||||! !|||||| !!! !!.|||..! !!!:! ThrIleIleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLeuMetL 303363 : ACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTTGATGA : 303422 96 : snTyrThrAsnLeuLeuLeuArgSerAsnGluIleArgAspCysIleHisHisValGl : 114 !.||| ! !||| ! !|||!.! ..!|||!:!!!:||||||.!..!.||||| ysTyrTrpAlaLeuAlaThrArgLysProArgIleLysGluCysIleGluGluValGl 303423 : AGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAGGTGCA : 303479 115 : nThrAspTrpLysIle >>>> Target Intron 1 >>>> ValThrArgProG : 124 |!:!||||||||| 938 bp ||| ! !! !. nSerAspTrpLysGlu++ ++ValGluSerLeuA 303480 : AAGTGATTGGAAAGAGgt.........................agGTGGAATCTCTCA : 304447 125 : luAspSerGlnValMetMetLysTyrAlaArgIleGlyArgPheIleAlaAlaPheCy : 143 .!||| !!:!!:!!|||:!:||||||!.!!:!!!:|||||| !:!:.!! !.!!|| rgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIleCy 304448 : GAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAATCTG : 304504 144 : sAlaThrPheMetGlnGlyGlyValLeuThrTyrCysValValThrAlaPheAlaThr : 162 ||||! !|||||| ! !|||! ! !! !||| !..!|||! ! !||||||||| sAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheAlaThr 304505 : CGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCGACC : 304561 163 : GlnThrIleGluIleAlaAsnGluThrArgIleIleArgMetLeuProCysAlaAlaT : 182 !||| ! :!:! !.!. ! !.!|||! |||!:! !||| !! ! !!.!!| GlyThrTyr---ValAspGluTyrAsnArgThrIleLysProLeuValTyrProThrT 304562 : GGAACGTAT---GTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACCT : 304618 183 : yrLysAsnLeuIleProValAspSerSerProMetAsnGluIleValLeuAlaThrGl : 201 ||!.. !|||.!! !|||.!.!!!||||||!!: !!|||:!:|||! ! !..!!! yrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheValHi 304619 : ACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCA : 304675 202 : nPheIleSerGlyPheIleValAsnSerSerAlaValAlaIleIleSerIleGlyAla : 220 .! !!!:!!!|||!:!:!!:!! !!|||! !.!!!.!!.! ! !.!!:!!!.!||| sCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAla 304676 : TTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCT : 304732 221 : ValPheThrAlaHisAlaTyrGlyGlnLeuThrValLeuMetArgTrpIleAsnGluP : 240 :!!|||.!!.!!||||||! !||||||:!! !:!!:!!||| ! ! :!:..!!!:. LeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAspL 304733 : CTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGATC : 304792 241 : heValAsnArgSerGluAspGlnLysLysSerValGluPheAsnGluIleGlyGluIl : 259 !!||||||!!!!.!|||...... ! !..! !!...!:!! !||||| euValAsnSerLysGluSerSerAspLeuAsp---------LysArgLeuIleGluIl 304793 : TTGTCAACAGCAAAGAATCATCTGATTTAGAT---------AAACGATTAATAGAAAT : 304840 260 : eValGluHisHisLeuArgIleLeu : 267 ||||||||||||||||||||||||| eValGluHisHisLeuArgIleLeu 304841 : TGTTGAGCATCATTTGCGAATTTTA : 304866 vulgar: gi|350422500|ref|XP_003493182.1| 17 267 . KQ414889.1 303196 304866 + 335 M 23 69 G 2 0 M 77 231 5 0 2 I 0 934 3 0 2 M 46 138 G 1 0 M 84 252 G 3 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303197 304866 335 + . gene_id 16 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303197 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303197 303496 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304866 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304866 . + . insertions 0 ; deletions 4 KQ414889.1 exonerate:protein2genome:local similarity 303197 304866 335 + . alignment_id 16 ; Query gi|350422500|ref|XP_003493182.1| ; Align 303197 18 69 ; Align 303266 43 231 ; Align 304435 120 138 ; Align 304573 167 252 ; Align 304825 254 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 316 Query range: 0 -> 267 Target range: 278525 -> 279338 1 : MetThrAsnLysSerAlaValValGluLysThrPheAspSerLeuGlyAspTyrSerL : 20 |||.!! !!!:!! !..!!!:..!|||!:::!!!!! ! !! ||||||: MetAlaLeuValThrSerSerThrAspSerThrTrpAsnThrAspTrpMetTyrSerV 278526 : ATGGCACTGGTCACTTCGTCAACCGATTCGACGTGGAACACGGATTGGATGTACAGCG : 278583 21 : euGlnPheAsnArgTrpLeuLeuIleSerIleGlyAlaTrpProAlaSerThrSerTh : 39 !!|||.!.|||||||||!!!|||! ! !!||||||!.!|||||| !||| !!!!.. alGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuCysVa 278584 : TACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGT : 278640 40 : rSerArgArgGluArgIleIleSerPheIleLeuIleAlaLeuCysTyrGlyPheIle : 58 !!!!! ! !|||!:!|||! !||| ! :!!||| !:!! !!! ! !.!.||| lThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIle 278641 : GACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATA : 278697 59 : LeuPheThrValIleProCysIlePheHisPheIleLeuGluAspGlu<->SerIleT : 77 !||| !:!!:!!|||||| !.!. ! :!:|||!!: ! ..!:!! GlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuA 278698 : GGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCG : 278757 78 : yrMetLysLeuLysValPheGlyProLeuSerHisTrpPheIleGlyGlyIleAsnTy : 96 !!! !|||:!!|||:!!.!!|||||||||||| !!! !!:!.! !|||!!.|| spThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrIleLysTy 278758 : ACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATA : 278814 97 : rThrAsnLeuLeuLeuArgSerAsnGluIleArgAspCysIleHisHisValGlnThr : 115 | !! !|||:!!! !|||.!!..!:!!||| !! ! |||:!::!! !!:!!!::||| rTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIleArgThr 278815 : TTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACG : 278871 116 : AspTrpLysIleVal<-><-><->ThrArgProGluAspSerGlnValMetMetLysT : 132 ||||||...:!!..! ::: |||::: ::::::|||! ! ! AspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMetArgAspS 278872 : GACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTGAGGGACA : 278931 133 : yrAlaArgIleGlyArgPheIleAlaAlaPheCysAlaThrPheMet<->GlnGlyGl : 150 !|||||||||||||||! !:!:||| !||| !!||| !|||||| ...||||| erAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGl 278932 : GCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGG : 278988 151 : yValLeuThrTyrCysValValThrAlaPheAlaThrGlnThrIleGluIleAlaAsn : 169 ||||!!! ! !..!|||:!! !! !||||||..!!::||| |||! !||| yValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIleAspAsn 278989 : AGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGACAAT : 279045 170 : GluThrArgIleIleArgMetLeuProCysAlaAlaTyrLysAsnLeuIleProValA : 189 |||||| :!:||| ! ! !!! ! !! !|||:::..!|||:!! ! ! GluThr------ValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProA 279046 : GAAACG------GTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCGC : 279099 190 : spSerSerProMetAsnGluIleValLeuAlaThrGlnPheIleSerGlyPheIleVa : 208 !!!!|||||| ! !|||||||||! ! !! !|||! !:!::!!!.!|||:!!:! rgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValLe 279100 : GTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTT : 279156 209 : lAsnSerSerAlaValAlaIleIleSerIleGlyAlaValPheThrAlaHisAlaTyr : 227 ! !!||| !.!!|||!.! ! !|||:!: !|||||||||..! !|||!.!! ! uTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCys 279157 : ATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGT : 279213 228 : GlyGlnLeuThrValLeuMetArgTrpIleAsnGluPheValAsnArgSerGluAspG : 247 ||||||!!!! !:!!|||:!!! ! !:!::!!:!!.!!:!!:!! !! !:!!! : GlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLysGlyA 279214 : GGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGGA : 279273 248 : lnLysLys<->SerValGluPheAsnGluIleGlyGluIleValGluHisHisLeuAr : 265 :!|||!.. |||..!.!. .!...!:!:|||!!:|||:!!||||||||||||!: rgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLy 279274 : GGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAA : 279330 266 : gIleLeu : 267 !|||||| sIleLeu 279331 : GATACTG : 279338 vulgar: gi|350422500|ref|XP_003493182.1| 0 267 . KQ414889.1 278525 279338 + 316 M 74 222 G 0 3 M 46 138 G 0 9 M 27 81 G 0 3 M 24 72 G 2 0 M 76 228 G 0 3 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278526 279338 316 + . gene_id 17 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278526 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278526 279338 . + . insertions 18 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 278526 279338 316 + . alignment_id 17 ; Query gi|350422500|ref|XP_003493182.1| ; Align 278526 1 222 ; Align 278751 75 138 ; Align 278898 121 81 ; Align 278982 148 72 ; Align 279054 174 228 ; Align 279285 250 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 297 Query range: 301 -> 406 Target range: 283096 -> 283567 302 : GluTrpAlaGluHisAspIleArgAsnLeuThrThrTyrPheMetIleMetAlaSerM : 321 ||||||:!!!!: !|||:!!!:!!.!:!!||||||:!!|||||||||:!: !|||| GluTrpSerAspGlyAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 283097 : GAATGGTCTGACGGCGATGTTCAGACTATGACTACGCATTTCATGATCCTTATATCCA : 283154 322 : etSerPheAsnIlePheThrValCysTyrIleGlyAspIleLeuThrGluGln >>> : 339 || ||||||||||||||||||! !||||||||| ! ||||||||||||||| etCysPheAsnIlePheThrValTyrTyrIleGlyLysIleLeuThrGluGln++ 283155 : TgtgtttcaacatttttacAGTATACTATATCGGGAAAATACTAACTGAACAGgt... : 283210 340 : > Target Intron 1 >>>> SerLysLysPheGlyAspValValTyrMetThrL : 350 72 bp !!!|||||| !!|||!!:|||||||||||||||! ++CysLysLysValGlyGluValValTyrMetThrA 283211 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 283313 351 : ysTrpTyrTyrLeuProAsnLysAspIlePheAspLeuIleLeuIleIleThrArgSe : 369 !.! !!:!|||||||||:!!|||||||||.!!:!!|||:!!|||||||||:!!||||| sn***PheTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 283314 : ATTAGTTTTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 283370 370 : rAsnSerAlaIleLysIleThrAlaGlyLysIleThrHisMetSerIleAsnThrPhe : 388 |!:! ...|||||||||||||||...|||::: ...|||||| !!|||||| rSerLeuValIleLysIleThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPhe 283371 : TAGCctggtaattaaaattaccgctagcaaattaattcaaatGTCCGCGTACACGTTC : 283427 389 : GlyAsp >>>> Target Intron 2 >>>> ValMetLysThrAlaPheAlaTy : 398 ! !||| 84 bp !.!!!::!!|||.!!|||||||| AspAsp++ ++AlaIleGluThrThrPheAlaTy 283428 : GACGATgt.........................agGCAATAGAAACCACTTTCgcgta : 283541 399 : rLeuAsnLeuLeuArgGlnValThr : 406 |||||||:::|||||| !!..!||| rLeuAsnIleLeuArg***ThrThr 283542 : tttaaatattctacgCTAAACGACG : 283567 vulgar: gi|350422500|ref|XP_003493182.1| 301 406 . KQ414889.1 283096 283567 + 297 M 37 111 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283097 283567 297 + . gene_id 18 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 283097 283207 . + . KQ414889.1 exonerate:protein2genome:local exon 283097 283207 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 283208 283209 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 283208 283279 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 283278 283279 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 283280 283435 . + . KQ414889.1 exonerate:protein2genome:local exon 283280 283435 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 283436 283437 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 283436 283519 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 283518 283519 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 283520 283567 . + . KQ414889.1 exonerate:protein2genome:local exon 283520 283567 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283097 283567 297 + . alignment_id 18 ; Query gi|350422500|ref|XP_003493182.1| ; Align 283097 302 111 ; Align 283280 339 156 ; Align 283520 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 240 Query range: 337 -> 406 Target range: 254271 -> 254567 338 : GlnSerLysLysPheGlyAspValValTyrMetThrLysTrpTyrTyrLeuProAsnL : 357 |||!!! !||| !!|||!!:||||||||||||||| ! |||||||||||||||.!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 358 : ysAspIlePheAspLeuIleLeuIleIleThrArgSerAsnSerAlaIleLysIleTh : 376 :! |||.!!|||||||||||||||||||||||||||||| !!.!:!!:!!||||| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 377 : rAlaGlyLysIleThrHisMetSerIleAsnThrPheGlyAsp >>>> Target I : 391 ||||||||||||| |||||||||:!! !!|||||||||||| 89 rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt............. : 254433 392 : ntron 1 >>>> ValMetLysThrAlaPheAlaTyrLeuAsnLeuLeuArgGlnVa : 405 bp |||:!:||||||!.!|||||||||||||||:!!||| !!|||:! ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMe 254434 : ............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAAAT : 254562 406 : lThr : 406 !:!! tSer 254563 : GTCC : 254567 vulgar: gi|350422500|ref|XP_003493182.1| 337 406 . KQ414889.1 254271 254567 + 240 M 53 159 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254567 240 + . gene_id 19 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254272 254430 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254430 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254431 254432 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254431 254519 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254518 254519 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254520 254567 . + . KQ414889.1 exonerate:protein2genome:local exon 254520 254567 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254567 240 + . alignment_id 19 ; Query gi|350422500|ref|XP_003493182.1| ; Align 254272 338 159 ; Align 254520 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 234 Query range: 337 -> 406 Target range: 244655 -> 244951 338 : GlnSerLysLysPheGlyAspValValTyrMetThrLysTrpTyrTyrLeuProAsnL : 357 |||!!! !||| !!|||!!:||||||||||||||| ! |||||||||||||||.!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 358 : ysAspIlePheAspLeuIleLeuIleIleThrArgSerAsnSerAlaIleLysIleTh : 376 :! |||.!!||||||||||||||||||! !|||||||||! !!.!:!!:!!||||| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 377 : rAlaGlyLysIleThrHisMetSerIleAsnThrPheGlyAsp >>>> Target I : 391 ||||||||||:!! !|||||||||:!! !!|||||||||||| 89 rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAsp++ 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATgt............. : 244817 392 : ntron 1 >>>> ValMetLysThrAlaPheAlaTyrLeuAsnLeuLeuArgGlnVa : 405 bp |||:!:||||||!.!|||||||||||||||:!!||| !!|||:! ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMe 244818 : ............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAAAT : 244946 406 : lThr : 406 !:!! tSer 244947 : GTCC : 244951 vulgar: gi|350422500|ref|XP_003493182.1| 337 406 . KQ414889.1 244655 244951 + 234 M 53 159 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244951 234 + . gene_id 20 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244656 244814 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244814 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244815 244816 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244815 244903 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244902 244903 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244904 244951 . + . KQ414889.1 exonerate:protein2genome:local exon 244904 244951 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244951 234 + . alignment_id 20 ; Query gi|350422500|ref|XP_003493182.1| ; Align 244656 338 159 ; Align 244904 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 226 Query range: 292 -> 402 Target range: 305073 -> 305816 293 : SerMetLeuGlyTyrTyrIleLeuThrGluTrpAlaGluHisAspIleArgAsnLeuT : 312 ..!.!.||| |||::: !!!:|||! !... !:!!! ! !!:!|||| GluPheLeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuT 305074 : GAGTTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTA : 305131 313 : hrThrTyrPheMetIleMetAlaSerMetSerPheAsnIlePheThrValCysTyrIl : 331 |||||||| :!!:!!:!! !|||:!:!!!||||||||||||! !:!!|||||||| hrThrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIl 305132 : CAACATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACAT : 305188 332 : eGlyAspIleLeuThrGluGln >>>> Target Intron 1 >>>> SerLysL : 341 ||||!!:||||||! !|||:!! 413 bp |||!..! eGlyGluIleLeuMetGluLys++ ++SerSerS 305189 : TGGTGAGATTCTTATGGAAAAGgt.........................agAGCAGTA : 305631 342 : ysPheGlyAspValValTyrMetThrLysTrpTyrTyrLeuProAsnLysAspIlePh : 360 .. !!||| ! !!:!|||! !!..||||||:!!||||||!.!||| ||| erValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHi 305632 : GCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACA : 305688 361 : eAspLeuIleLeuIleIleThrArgSerAsnSerAlaIleLysIleThrAlaGlyLys : 379 !! !|||||||||||||||.!!! !|||!:!!:! !! !||||||!:!||||||||| sGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLys 305689 : TGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAA : 305745 380 : IleThrHisMetSerIleAsnThrPheGlyAspValMetLysThrAlaPheAlaTyrL : 399 :!!..! !!:!:|||:!!::!|||||||||:!!|||! ! ! :::::: : ValValAspLeuSerLeuSerThrPheGlyAsnValSerTyrTyrGlnTyrSerAsnI 305746 : GTAGTTGATTTATCTTTATCCACATTTGGAAACGTGAGTTACTATcaatattccaata : 305805 400 : euAsnLeuLeu : 402 ::::::::::: leSerIleVal 305806 : tttcaattgtt : 305816 vulgar: gi|350422500|ref|XP_003493182.1| 292 402 . KQ414889.1 305073 305816 + 226 M 46 138 5 0 2 I 0 409 3 0 2 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305074 305816 226 + . gene_id 21 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305074 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305074 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305816 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305816 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305074 305816 226 + . alignment_id 21 ; Query gi|350422500|ref|XP_003493182.1| ; Align 305074 293 138 ; Align 305625 339 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 225 Query range: 337 -> 404 Target range: 264723 -> 265004 338 : GlnSerLysLysPheGlyAspValValTyrMetThrLysTrpTyrTyrLeuProAsnL : 357 |||!!!|||||| !!|||!!:||||||||||||:!!!!.||||||||||||||| !!| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 358 : ysAspIlePheAspLeuIleLeuIleIleThrArgSerAsnSerAlaIleLysIleTh : 376 ||||||||.!!|||||||||||||||||| !||||||!:! !!.!.!!|||.!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 377 : rAlaGlyLysIleThrHisMetSerIleAsnThrPheGlyAsp >>>> Target I : 391 ||||||||||||| !|||||||||!!: !!||||||.!!||| 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 392 : ntron 1 >>>> ValMetLysThrAlaPheAlaTyrLeuAsnLeuLeuArgGln : 404 bp |||!!:|||:!!:!!|||.!!||||||||||||||||||||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArgGln 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGCCAA : 265004 vulgar: gi|350422500|ref|XP_003493182.1| 337 404 . KQ414889.1 264723 265004 + 225 M 53 159 5 0 2 I 0 76 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265004 225 + . gene_id 22 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265004 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265004 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265004 225 + . alignment_id 22 ; Query gi|350422500|ref|XP_003493182.1| ; Align 264724 338 159 ; Align 264963 391 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 213 Query range: 278 -> 406 Target range: 301617 -> 302163 279 : GlnPheCysPheMetGluLeuLeuLysSerLysLeuAspIleSerMetLeuGlyTyrT : 298 !!..!!||| ::: ...:::|||! |||:!! !!.!.!.||| !! HisLeuCysAlaValIleLysPheGluSerThrLeuAsnAlaLysPheLeuArgValI 301618 : CATCTCTGCgctgtaattaaatttgaatctACTTTAAATGCAAAGTTTTTACGAGTAA : 301675 299 : yrIleLeuThrGluTrpAlaGluHisAspIleArgAsnLeuThrThrTyrPheMetIl : 317 ! !!!! !|||||| !.!. !|||! ! ! !:!! !|||!:!|||! :! le***Phe***GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLe 301676 : TTTGATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCT : 301732 318 : eMetAlaSerMetSerPheAsnIlePheThrValCysTyrIleGlyAspIleLeuThr : 336 ::!:.!!|||.!.!!!||||||||||||! ! !!||||||||||||!!:||||||:!! uLeuThrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSer 301733 : GTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCC : 301789 337 : GluGln >>>> Target Intron 1 >>>> SerLysLysPheGlyAspValVa : 346 |||||| 80 bp !!!!..:!!.!!|||...!.! GluGln++ ++CysSerGlnIleGlySerAlaSe 301790 : GAACAGgt.........................agTGTAGCCAAATTGGTTCAGCATC : 301899 347 : lTyrMetThrLysTrpTyrTyrLeuProAsnLysAspIlePheAspLeuIleLeuIle : 365 !||| !! ! ! |||||| !!|||||| ||| !!:!||||||||||||:!! rTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeu 301900 : GTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTT : 301956 366 : IleThrArgSerAsnSerAlaIleLysIleThrAlaGlyLysIleThrHisMetSerI : 385 ! !..!! !|||.!.! ! !! |||:!!|||||||||||||||! ! !!:!:|||: SerValIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerL 301957 : AGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCT : 302016 386 : leAsnThrPheGlyAsp >>>> Target Intron 2 >>>> ValMetLysThr : 394 !:|||||||||.!!..! 82 bp |||:!!|||||| euAsnThrPheSerSer++ ++ValValLysThr 302017 : TGAATACATTCAGCTCTgt.........................agGTGGTGAAAACA : 302125 395 : AlaPheAlaTyrLeuAsnLeuLeuArgGlnValThr : 406 :!! ! !.!|||||||||||||||||| !|||||| SerValValTyrLeuAsnLeuLeuArgThrValThr 302126 : TCGGTGGTGTACTTGAATTTACTGCGAACAGTTACA : 302163 vulgar: gi|350422500|ref|XP_003493182.1| 278 406 . KQ414889.1 301617 302163 + 213 M 60 180 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301618 302163 213 + . gene_id 23 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301618 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301618 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302163 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302163 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301618 302163 213 + . alignment_id 23 ; Query gi|350422500|ref|XP_003493182.1| ; Align 301618 279 180 ; Align 301878 339 156 ; Align 302116 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 301 -> 391 Target range: 219328 -> 219671 302 : GluTrpAlaGluHisAspIleArgAsnLeuThrThrTyrPheMetIleMetAlaSerM : 321 |||||| !..!:!!|||:!!! !!:! !..!||||||.!!!!::!!:!: !|||: GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 322 : etSerPheAsnIlePheThrValCysTyrIleGlyAspIleLeuThrGluGln >>> : 339 !::::|||||||||||| ||||||||||||!!:|||:!!.!!|||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln++ 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAggt... : 219442 340 : > Target Intron 1 >>>> SerLysLysPheGlyAspValValTyrMetThrL : 350 73 bp !! :::|||...|||:::::: !||||||! !: ++CysArgLysIleGlyGluMetSerTyrMetIleG 219443 : ......................agTGtaggaaaattggagaaatgtCGTACATGATCG : 219546 351 : ysTrpTyrTyrLeuProAsnLysAspIlePheAspLeuIleLeuIleIleThrArgSe : 369 !!|||||| ||| !!...||| ! ! .!! !:!!|||! !|||.!!! !|| luTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaMetSe 219547 : AATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTATGTC : 219603 370 : rAsnSerAlaIleLysIleThrAlaGlyLysIleThrHisMetSerIleAsnThrPhe : 388 |||||||:!!||||||:!:|||||||||!!.!!:..!.!.:!!||||||!:!|||||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPhe 219604 : GAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCACTTTT : 219660 389 : GlyAspVal : 391 !|||||| ThrAspVal 219661 : ACCGACGTG : 219671 vulgar: gi|350422500|ref|XP_003493182.1| 301 391 . KQ414889.1 219328 219671 + 204 M 37 111 5 0 2 I 0 69 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219671 204 + . gene_id 24 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219671 204 + . alignment_id 24 ; Query gi|350422500|ref|XP_003493182.1| ; Align 219329 302 111 ; Align 219513 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 200 Query range: 337 -> 397 Target range: 238625 -> 238805 338 : GlnSerLysLysPheGlyAspValValTyrMetThrLysTrpTyrTyrLeuProAsnL : 357 |||!!! !||| !!|||!!:||||||||||||||| ! |||||||||||||||.!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 358 : ysAspIlePheAspLeuIleLeuIleIleThrArgSerAsnSerAlaIleLysIleTh : 376 :! |||.!!||||||||||||||||||! !||||||||| !!.!:!!|||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 377 : rAlaGlyLysIleThrHisMetSerIleAsnThrPheGlyAspValMetLysThrAla : 395 ||||||||||:!! !|||||||||:!! !!|||||||||||||||! :!!||| ! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 396 : PheAla : 397 .!!||| LeuAla 238798 : CTTGCT : 238805 vulgar: gi|350422500|ref|XP_003493182.1| 337 397 . KQ414889.1 238625 238805 + 200 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238805 200 + . gene_id 25 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238805 200 + . alignment_id 25 ; Query gi|350422500|ref|XP_003493182.1| ; Align 238626 338 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 199 Query range: 278 -> 401 Target range: 280022 -> 280465 279 : GlnPheCysPheMetGluLeuLeuLysSerLysLeuAspIleSerMetLeuGlyTyrT : 298 .!.!!.|||!:!.!..!.:!!:!!! !:!!|||:!!! .!! !|||! !..!! ! AspLeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerLeuS 280023 : GACTTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGTTGT : 280080 299 : yrIleLeuThrGluTrpAlaGluHisAspIleArgAsnLeuThrThrTyrPheMetIl : 317 :!!!!! !||||||! !:!!:!!||| !! !... ! !||||||!!.|||.! erValPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPh 280081 : CAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTT : 280137 318 : eMetAlaSerMetSerPheAsnIlePheThrValCysTyrIleGlyAspIleLeuThr : 336 !:!: !|||:!:!!!||||||:!!|||! !:!!||||||||||||!!:||||||:!! eLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSer 280138 : TCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCC : 280194 337 : Glu{G} >>>> Target Intron 1 >>>> {ln}SerLysLysPheGlyAspV : 345 |||{|} 74 bp {||}!!! !||| !!|||! Glu{G}-- +-{ln}CysLeuLysValGlyValS 280195 : GAA{C}ag.........................at{AG}TGCTTAAAAGTCGGCGTGT : 280295 346 : alValTyrMetThrLysTrpTyrTyrLeuProAsnLysAspIlePheAspLeuIleLe : 364 !..!||||||! ! ! |||||| !||||||...||| ! ! ! !|||||||| erThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLe 280296 : CAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACT : 280352 365 : uIleIleThrArgSerAsnSerAlaIleLysIleThrAlaGlyLysIleThrHisMet : 383 ||||.!!.!! !|||||||||:!!||||||:!!|||||||||||||||! ! !!:!: uIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeu 280353 : GATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTC : 280409 384 : SerIleAsnThrPheGlyAspValMetLysThrAlaPheAlaTyrLeuAsnLeu : 401 |||:!!!:!!:!||| !!..!|||! ! ! ! !!!.:!!|||! !:!!||| SerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280410 : TCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: gi|350422500|ref|XP_003493182.1| 278 401 . KQ414889.1 280022 280465 + 199 M 59 177 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280023 280465 199 + . gene_id 26 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280023 280200 . + . KQ414889.1 exonerate:protein2genome:local exon 280023 280200 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280201 280202 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local intron 280201 280274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280273 280274 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 280275 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280275 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280023 280465 199 + . alignment_id 26 ; Query gi|350422500|ref|XP_003493182.1| ; Align 280023 279 177 ; Align 280277 339 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 187 Query range: 16 -> 235 Target range: 194168 -> 194816 17 : AspTyrSerLeuGlnPheAsnArgTrpLeuLeuIleSerIleGlyAlaTrpProAlaS : 36 !!:|||:!!:!!!:! ! !:! !||||||! ! !!|||||| !|||||| !. GluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProArgG 194169 : GAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAAGGG : 194226 37 : erThrSerThrSerArgArgGluArgIleIleSerPheIleLeuIleAlaLeuCysTy : 55 .! !||| ! |||!!:|||:!! ! !||| !! !! !!.!:!! !!: luAspSerLeu------ArgAspArgValArgLeuPheAlaGlnThrGlyValValPh 194227 : AGGATTCTCTT------CGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTT : 194277 56 : rGlyPheIleLeuPheThrValIleProCysIlePheHisPheIleLeuGluAspGlu : 74 !!.!!!.!!:! !||| !:!!:!!||| !:!:.!!:!! ! !!!!!!: !||| eAlaLeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCysGlu 194278 : CGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAG : 194334 75 : SerIleTyrMetLysLeuLysValPheGlyProLeuSerHisTrpPheIleGlyGlyI : 94 ..!:!: ! ! ! :!!||||||.!!!.! !!! ! ! ! ! .!.:!:!.! !| AspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleI 194335 : GATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCA : 194394 95 : leAsnTyrThrAsnLeuLeuLeuArgSerAsnGluIleArgAspCysIleHisHisVa : 113 ||!!.!:! !!..:!!:!!:!!!.!!!!!!.||||||||| !|||:!:! .!.:! leLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGluMe 194395 : TCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGAT : 194451 114 : lGlnThrAspTrpLysIleValThrArgProGluAspSerGlnValMetMetLysTyr : 132 !:!!|||.!.!::!:! !||| ! !! !|||||| !!|||||||||! !!!.! ! tGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsnCys 194452 : GGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGC : 194508 133 : AlaArgIleGlyArgPheIleAlaAlaPheCysAlaThrPheMetGlnGlyGlyValL : 152 |||!:!||||||||||||.!!.!!.!!.!.! ! ! !.!! ! ||||||!.!| AlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaL 194509 : GCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTT : 194568 153 : euThrTyrCysValValThrAlaPheAlaThrGlnThrIleGluIleAlaAsnGluTh : 171 || !!||| !:!!:!! ! !!.!. !:!!:!!! !||| :!! !.!.!!:!. euProTyrHisIleIleLeuProLeuMetSerGluArgIle---ValLysGluAspAs 194569 : TGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATT---GTCAAGGAGGATAA : 194622 172 : rArgIleIleArgMetLeuProCysAlaAlaTyrLysAsnLeuIleProValAspSer : 190 !!!!! ! ! ! ||||||! ! !::! !! ! !!!!.!! !!:!!!!:..! nSerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAsp 194623 : CAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGAC : 194679 191 : SerProMetAsnGluIleValLeuAlaThrGlnPheIleSerGlyPheIleValAsnS : 210 ||||||!!: !!||||||..!!!!!.!:!!|||.!.:!:! !.!! !|||:!! | SerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuS 194680 : TCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGT : 194739 211 : erSerAlaValAlaIleIleSerIleGlyAlaValPheThrAlaHisAlaTyrGlyGl : 229 ||!!! ! !!.!||| !|||:!:! !|||..!.!!! ! !|||..!! !||| erThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGlyLe 194740 : CGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTT : 194796 230 : nLeuThrValLeuMetArg : 235 !!!! !||| !! ||| uPheGluValThrSerArg 194797 : GTTCGAAGTGACCAGCAGA : 194816 vulgar: gi|350422500|ref|XP_003493182.1| 16 235 . KQ414889.1 194168 194816 + 187 M 23 69 G 2 0 M 124 372 G 1 0 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194169 194816 187 + . gene_id 27 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194169 194816 . + . KQ414889.1 exonerate:protein2genome:local exon 194169 194816 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 194169 194816 187 + . alignment_id 27 ; Query gi|350422500|ref|XP_003493182.1| ; Align 194169 17 69 ; Align 194238 42 372 ; Align 194610 167 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 267 -> 338 Target range: 263671 -> 264648 268 : SerLeuIleAlaGlyIleGluAsnValLeuThrGlnPheCysPheMetGluLeuLeuL : 287 |||!!!|||! ! !!|||:!!||||||:!!!:! !.!.||||||:!!||||||!!!| SerPheIleAspArgIleLysAsnValMetSerThrIleCysPheValGluLeuPheL 263672 : AGTTTCATAGATCGTATTAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCA : 263729 288 : ysSerLysLeuAspIleSer{Me} >>>> Target Intron 1 >>>> {t}Le : 295 ||:!!! !|||||||||!!!{!!} 764 bp {:}:! ysAlaThrLeuAspIleCys{Il}+- +-{e}Il 263730 : AGGCTACGCTGGATATATGC{AT}gc.........................aa{T}AT : 264517 296 : uGlyTyrTyrIleLeuThrGluTrpAlaGluHisAspIleArgAsnLeuThrThrTyr : 314 ! ! ! !!:!!!!! !||||||! !...|||||||||:::||||||||||||||| eThrIleAspValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyr 264518 : AACAATTGACGTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATAT : 264574 315 : PheMetIleMetAlaSerMetSerPheAsnIlePheThrValCysTyrIleGlyAspI : 334 |||||||||:!! !||||||!!! !||||||||| !:!!||||||||||||!!:| PheMetIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluI 264575 : TTCATGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGA : 264634 335 : leLeuThrGluGln : 338 |||||||||||||| leLeuThrGluGln 264635 : TATTGACTGAGcag : 264648 vulgar: gi|350422500|ref|XP_003493182.1| 267 338 . KQ414889.1 263671 264648 + 166 M 26 78 S 0 2 5 0 2 I 0 760 3 0 2 S 1 1 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 263672 264648 166 + . gene_id 28 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 263672 263751 . + . KQ414889.1 exonerate:protein2genome:local exon 263672 263751 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263752 263753 . + . intron_id 1 ; splice_site "GC" KQ414889.1 exonerate:protein2genome:local intron 263752 264515 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264514 264515 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 264516 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264516 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 263672 264648 166 + . alignment_id 28 ; Query gi|350422500|ref|XP_003493182.1| ; Align 263672 268 78 ; Align 264517 295 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 17 -> 116 Target range: 299689 -> 299989 18 : TyrSerLeuGlnPheAsnArgTrpLeuLeuIleSerIleGlyAlaTrpPro<->AlaS : 36 |||!!!||||||.!. !!:!|||||||||! ! !!||||||!.!|||! ! !. TyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpArgLeuLeuA 299690 : TACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGCGATTGCTAG : 299747 37 : erThrSerThrSerArgArgGluArgIleIleSerPheIleLeuIleAlaLeuCysTy : 55 .! ! !!:!!|||!:!! !|||!.!:!!:!!|||.!!:!!|||!!:.!!:!!|||!: spGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMetThrIleCysPh 299748 : ATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATGACAATATGCTT : 299804 56 : rGlyPheIleLeuPheThrValIleProCysIlePheHisPheIleLeuGluAspGlu : 74 !..! !:!:!!!|||! !|||:!:|||! ! ! !:!!.!!.!!!!!! !!!::!! eSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePhePheAlaGluLys 299805 : CTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCTTCGCGGAGAAA : 299861 75 : SerIleTyrMetLysLeuLysValPheGlyProLeuSerHisTrpPheIleGlyGlyI : 94 ||||||:!!:!:|||:!!|||||||||||||||:!!.!! !!! .!! !..! !: SerIleHisValLysValLysValPheGlyProValGlyPheCysLeuSerSerIleV 299862 : AGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCATCG : 299921 95 : leAsnTyrThrAsnLeuLeuLeuArgSerAsnGluIleArgAspCysIleHisHisVa : 113 !!!!.||| ! !!|||! !|||!.!.!!..!! !.!!..! ||||||!!.||||| alLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCysIleGlnHisVa 299922 : TCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGCATCCAACACGT : 299978 114 : lGlnThrAsp : 116 |:!!! !||| lGluArgAsp 299979 : CGAGAGAGAC : 299989 vulgar: gi|350422500|ref|XP_003493182.1| 17 116 . KQ414889.1 299689 299989 + 165 M 17 51 G 0 3 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299690 299989 165 + . gene_id 29 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299690 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299690 299989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299690 299989 165 + . alignment_id 29 ; Query gi|350422500|ref|XP_003493182.1| ; Align 299690 18 51 ; Align 299744 35 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 333 -> 391 Target range: 214848 -> 215022 334 : IleLeuThrGluGlnSerLysLysPheGlyAspValValTyrMetThrLysTrpTyrT : 353 |||:!! !:!!|||!!!|||||| !!|||!!:||| !||||||! !:!!|||||| IleMetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrA 214849 : ATTATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACC : 214906 354 : yrLeuProAsnLysAspIlePheAspLeuIleLeuIleIleThrArgSerAsnSerAl : 372 ||||||..!!!. ! ! .!! !! !|||||||||!!:.!!! !|||||||||:! rgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSe 214907 : GATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATC : 214963 373 : aIleLysIleThrAlaGlyLysIleThrHisMetSerIleAsnThrPheGlyAspVal : 391 !:!!|||.!!|||||||||!!.!!:..!.!.:!!||||||!:!||||||.!!..!||| rValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214964 : CGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215020 vulgar: gi|350422500|ref|XP_003493182.1| 333 391 . KQ414889.1 214848 215022 + 138 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214849 215022 138 + . gene_id 30 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214849 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214849 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214849 215022 138 + . alignment_id 30 ; Query gi|350422500|ref|XP_003493182.1| ; Align 214849 334 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 329 -> 394 Target range: 224472 -> 224667 330 : TyrIleGlyAspIleLeuThrGluGlnSerLysLysPheGlyAspValValTyrMetT : 349 |||.!! !...:!!!!! ! ||| :::|||...|||...||| !||||||! TyrPheLeuSerLeuPhePheProGlnCysGluLysIleGlyGlnValSerTyrMetI 224473 : TATTTTTTATCGCTATTTTTTCCtcagtgtgaaaaaattggacaAGTGTCGTACATGA : 224530 350 : hrLysTrpTyrTyrLeuProAsnLysAspIlePheAspLeuIleLeuIleIleThrAr : 368 ! ! |||||| ||| !!...!!. ! ! !.!. !! !||||||||||||.!!! leAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMe 224531 : TCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGAT : 224587 369 : gSerAsnSerAlaIleLysIleThrAlaGlyLysIleThrHisMetSerIleAsnThr : 387 !|||||||||:!!||||||:!:|||||||||!!.!!:..!.!.:!!!!!:!!!.!||| tSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThr 224588 : GTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACT : 224644 388 : PheGlyAspValMetLysThr : 394 ||||||||||||! ! ||| PheGlyAspValSerIleThr 224645 : TTCGGTGACGTAAGTATCACA : 224667 vulgar: gi|350422500|ref|XP_003493182.1| 329 394 . KQ414889.1 224472 224667 + 129 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224473 224667 129 + . gene_id 31 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224473 224667 . + . KQ414889.1 exonerate:protein2genome:local exon 224473 224667 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224473 224667 129 + . alignment_id 31 ; Query gi|350422500|ref|XP_003493182.1| ; Align 224473 330 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 337 -> 400 Target range: 292389 -> 292578 338 : GlnSerLysLysPheGlyAspValValTyrMetThrLysTrpTyrTyrLeuProAsnL : 357 |||.!!!..:!!.!!!.! !!!.! !||| |||:!!|||||| !!||||||!..: GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 358 : ysAspIlePheAspLeuIleLeuIleIleThrArgSerAsnSerAlaIleLysIleTh : 376 :! ! ! !|||:!!:!!|||:!::!!.!!! !!!!!!. ! !!||||||:!!|| rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 377 : rAlaGlyLysIleThrHisMetSerIleAsnThrPheGlyAspValMetLysThrAla : 395 ||||||||||||| ! !:!:|||:!:||||||||||||! !||| :!!:!! ! rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSerLys 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCAAAA : 292561 396 : PheAlaTyrLeuAsn : 400 .!.!.!! :!!:!! LeuValLeuIleHis 292562 : CTAGTCTTGATACAC : 292578 vulgar: gi|350422500|ref|XP_003493182.1| 337 400 . KQ414889.1 292389 292578 + 118 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 292578 118 + . gene_id 32 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292390 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 292578 118 + . alignment_id 32 ; Query gi|350422500|ref|XP_003493182.1| ; Align 292390 338 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 337 -> 393 Target range: 297641 -> 297809 338 : GlnSerLysLysPheGlyAspValValTyrMetThrLysTrpTyrTyrLeuProAsnL : 357 |||:!!:!!|||||||||:!!!.!!.!|||! ! !:!!|||||| !!|||||| ! GlnAlaGluLysPheGlyAsnAlaAlaTyrAsnIleGluTrpTyrAsnLeuProProA 297642 : CAGGCTGAAAAATTCGGCAATGCAGCTTATAACATCGAATGGTACAACTTACCGCCAA : 297699 358 : ysAspIlePheAspLeuIleLeuIleIleThrArgSerAsnSerAlaIleLysIleTh : 376 !. !.!!||||||:!:|||!!:||| !! !:!!!!.! ! !! !:!:!!|| snArgAlaLeuAspLeuValLeuMetIleGlyIleAlaLysPheProProArgLeuTh 297700 : ACAGGGCTCTCGATCTGGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCAC : 297756 377 : rAlaGlyLysIleThrHisMetSerIleAsnThrPheGlyAspValMetLys : 393 |...||||||||| :::|||||||||||||||.!!! !||| !:: rGlyGlyLysIlePheAspIleSerIleAsnThrPheSerAlaValArgArg 297757 : AggtggaaaaatattcgatatatCGATAAACACGTTCAGTGCCGTACGTAga : 297809 vulgar: gi|350422500|ref|XP_003493182.1| 337 393 . KQ414889.1 297641 297809 + 114 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297642 297809 114 + . gene_id 33 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297642 297809 . + . KQ414889.1 exonerate:protein2genome:local exon 297642 297809 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297642 297809 114 + . alignment_id 33 ; Query gi|350422500|ref|XP_003493182.1| ; Align 297642 338 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 348 -> 391 Target range: 206272 -> 206401 349 : ThrLysTrpTyrTyrLeuProAsnLysAspIlePheAspLeuIleLeuIleIleThrA : 368 ..!!!.|||||| !|||||||||!:! !! !..!:!!||||||||||||.!!! ValAsnTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaM 206273 : GTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCA : 206330 369 : rgSerAsnSerAlaIleLysIleThrAlaGlyLysIleThrHisMetSerIleAsnTh : 387 !||||||! ! !!||||||:!!||||||||||||!!: !.!.||||||:!! !!: etSerAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSe 206331 : TGTCTAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAG : 206387 388 : rPheGlyAspVal : 391 !||| !|||||| rPheThrAspVal 206388 : TTTCACCGATGTA : 206401 vulgar: gi|350422500|ref|XP_003493182.1| 348 391 . KQ414889.1 206272 206401 + 108 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206273 206401 108 + . gene_id 34 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206273 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206273 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206273 206401 108 + . alignment_id 34 ; Query gi|350422500|ref|XP_003493182.1| ; Align 206273 349 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 184 -> 249 Target range: 202712 -> 202907 185 : LeuIleProValAspSerSerProMetAsnGluIleValLeuAlaThrGlnPheIleS : 204 :!!||| !||| ! !||||||:!!||||||||| !!!!!:!!! !!:!.!!:!!: IleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleValA 202713 : ATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAG : 202770 205 : erGlyPheIleValAsnSerSerAlaValAlaIleIleSerIleGlyAlaValPheTh : 223 !!! !.!!:!!:!!:!!.!! !.!!|||!.! ! !!!!:!: !|||:!!|||.! laValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAl 202771 : CTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGC : 202827 224 : rAlaHisAlaTyrGlyGlnLeuThrValLeuMetArgTrpIleAsnGluPheValAsn : 242 !!.!|||! !! !||||||:!! !||||||||| !|||:!:.!..!.!!.:!!:!! aValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMetAsp 202828 : GGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGAT : 202884 243 : ArgSerGluAspGlnLysLys : 249 !! !!..!|||..!!..||| GlyArgSerAspMetSerLys 202885 : GGTCGTTCGGATATGAGTAAA : 202907 vulgar: gi|350422500|ref|XP_003493182.1| 184 249 . KQ414889.1 202712 202907 + 100 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202713 202907 100 + . gene_id 35 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202713 202907 . + . KQ414889.1 exonerate:protein2genome:local exon 202713 202907 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202713 202907 100 + . alignment_id 35 ; Query gi|350422500|ref|XP_003493182.1| ; Align 202713 185 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1297 Query range: 15 -> 408 Target range: 232444 -> 235260 16 : AlaHisAspTyrGluTyrSerIleGlnValAsnArgTrpLeuMetGlnProIleGlyA : 35 .!!!..|||||||||||||||||||||||||||||||||!!!:!! !|||!!:|||| ThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyA 232445 : ACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCG : 232502 36 : laTrpProLysLeuThrLysThrAsnArgThrGlnArgLeuPheAlaLysLeuLeuAs : 54 ||||||||::::!!|||:!!|||:::|||.!!|||!:!|||.!!||||||||||||!. laTrpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuAr 232503 : CATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAG : 232559 55 : nPheIleCysHisSerLeuIleIlePheThrIleValProCysIleLeuHisIleVal : 73 ..!!! !||||||||||||!!:|||! !:!!|||||||||||||||||| !|||:!! gLeuThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeu 232560 : ACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTG : 232616 74 : TyrGluAlaGluSerSerArgMetLysMetLysIleIleGlyProValSerHisTrpL : 93 !:!|||! ! !||| !..! !:!|||||| !|||||||||:!!||||||!::| PheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheL 232617 : TTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTC : 232676 94 : euMetGlyGluLeuAsnTyrCysCysLeuLeuSerLysThrAspAspIleIleArgCy : 112 ||||||||||||||||||||||||||||||||:!!|||.!!:!!||||||:!! !|| euMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCy 232677 : TGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTG : 232733 113 : sIleLysHisValGluArgAspTrpGlnValValGluAsnAlaSerSerArgGluMet : 131 |:!::!!!!.|||:!!!:!||||||!:! !|||:!!!!. !! ! !|||!!::!! sValGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeu 232734 : CGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTG : 232790 132 : MetLeuLysTyrAlaLysValGlyArgPheIleAlaPheIleAlaAlaPheCysMetH : 151 ||||||||| !!||||||:!!||||||! ||||||! !||||||||||||||||||| MetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetH 232791 : ATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGC : 232850 152 : isSerGlyValLeuAlaPheSerIleThrLysGlyPheLysLysMetMetPheLeuVa : 170 ||!!!|||||| !:!! !..!|||..!! !|||.!!:::! !! ! !|||! !|| isThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrVa 232851 : ACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGT : 232907 171 : lGlyAsnAspSerTyrPheMetTyrProLeuProCysProValTyrThrAsnLeuLeu : 189 |||||||!!:||||||! |||||||||||||||||| !! !!||||||!!.|||:!! lGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMet 232908 : GGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATG : 232964 190 : AspAlaArgPheSerProAlaAsnGluIleValPheValLeuGlnIleLeuSerGlyP : 209 |||.!!||||||||||||.!!|||||||||:!!|||||||||||| !|||||||||| AspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyP 232965 : GACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGT : 233024 210 : heIleValThrSerValThrValGlyAlaCysGlyLeuAlaAlaValLeuThrMetHi : 228 ||||||||!.!|||||||||||||||||||||||||||!.!|||||||||.!!||||| heIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHi 233025 : TCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCA : 233081 229 : sAlaSerGlyGlnLeuAsnMetValValAlaArgLeuAspAsnLeuValAspThrLys : 247 ||||!!!||||||||||||:!!|||:!!:!!!:!||||||:!!|||||||||.!!||| sAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLys 233082 : CGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAA : 233138 248 : ValGluGluLysGlnGluAlaGlnThrValAlaGlnArgLysLeuGlyIleIleValG : 267 ! !:!!|||:!!::! |||||||||||||||||||||.!!||||||| GlyGlnGluGluArg------------ValAlaGlnArgLysLeuGlyPheIleValG 233139 : GGGCAGGAGGAGAGA------------GTCGCGCAGAGGAAGTTAGGTTTCATCGTGG : 233186 268 : luHisHisLeuArgThrLeu{Se} >>>> Target Intron 1 >>>> {r}Le : 275 ||||||||||||||||||||{||} 1315 bp {|}!! luHisHisLeuArgThrLeu{Se}++ ++{r}Ph 233187 : AGCATCATTTGCGTACATTA{AG}gt.........................ag{T}TT : 234525 276 : uIleAlaSerIleGluLysValMetAsnMetIleCysLeuValGluLeuValGlyCys : 294 !||| !!:!||||||!!.|||||||||:!:||||||||||||||||||||||||||| eIleArgAsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuValGlyCys 234526 : TATACGGAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGATGC : 234582 295 : ThrIleAsnMetCysIleIleLysTyrSerPheLeuThr >>>> Target Intro : 308 |||:!:|||||||||!!::!!:!!|||! !!!.|||||| 189 bp ThrLeuAsnMetCysMetLeuGluTyrTyrLeuLeuThr++ 234583 : ACGTTGAACATGTGCATGCTCGAGTATTATTTACTCACGgt................. : 234626 309 : n 2 >>>> GluLysSerLysAspMetArgIleValTyrAlaIleValTyrAlaSer : 323 ||||||||||||::: ! !|||!.!|||||||||!.!||| ++GluLysSerLysGluLysLeuAlaSerTyrValIleValTyrValSer 234627 : ........agGAAAAgtcgaaggaaaaattagCTTCATACGTCATCGTGTACGTGTCC : 234858 324 : MetValPheAsnIlePheIlePheCysTyrIleGlyGluIleValIleGluGln >> : 342 |||..!|||||||||||||||||||||||||||||||||! :!!! !|||||| MetThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGln++ 234859 : ATGACATTtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGCAGgt.. : 234917 343 : >> Target Intron 3 >>>> GlyGluArgValGlyLysLysValTyrMetThr : 352 74 bp !! !:!||||||:!!||||||||||||||| ++CysThrLysValGlyGluLysValTyrMetThr 234918 : .......................agTGTACCAAAGTCGGAGAAAAAGTGTACATGACC : 235019 353 : GluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValLeuValIleSerArgS : 372 ||||||||||||||||||||||||||||||||||||||||||:!!:!!|||||||||| GluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgS 235020 : GAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGT : 235079 373 : erSerMetValValLysIleThrAlaGlyLysPheIleGlnIleSerIleThrThrPh : 391 |||||||||||:!!|||||||||||||||||||||:!!|||!!:|||:!!.!!||||| erSerMetValIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPh 235080 : CGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATT : 235136 392 : eGlyVal >>>> Target Intron 4 >>>> ValPheLysThrSerPheAlaT : 401 ||||! ! 71 bp |||||||||.!!|||||||||| eGlyAsp++ ++ValPheLysAlaSerPheAlaT 235137 : TGGCGATgt.........................agGTATTTAAGGCGTCTTTCGCCT : 235237 402 : yrLeuAsnMetIleArgThrMet : 408 ||!!!|||||||||||||||:!: yrPheAsnMetIleArgThrVal 235238 : ACTTCAACATGATCCGCACAGTT : 235260 vulgar: gi|350422520|ref|XP_003493189.1| 15 408 . KQ414889.1 232444 235260 + 1297 M 237 711 G 4 0 M 17 51 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 33 99 5 0 2 I 0 185 3 0 2 M 34 102 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232445 235260 1297 + . gene_id 1 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232445 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232445 233208 . + . insertions 0 ; deletions 4 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235144 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235144 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 235145 235146 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 235145 235215 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 235214 235215 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 235216 235260 . + . KQ414889.1 exonerate:protein2genome:local exon 235216 235260 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232445 235260 1297 + . alignment_id 1 ; Query gi|350422520|ref|XP_003493189.1| ; Align 232445 16 711 ; Align 233156 257 51 ; Align 234525 275 99 ; Align 234813 308 102 ; Align 234989 342 156 ; Align 235216 394 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 738 Query range: 19 -> 406 Target range: 256649 -> 258729 20 : GluTyrSerIleGlnValAsnArgTrpLeuMetGlnProIleGlyAlaTrpProLysL : 39 !!:||||||:!!|||:!!|||||||||!!!:!!:!!|||||||||||||||||| ! AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS 256650 : GATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCT : 256707 40 : euThrLysThrAsnArgThrGlnArgLeuPheAlaLysLeuLeuAsnPheIleCysHi : 58 !:!!...|||!..! ! !:!!||| ! !!:!!! :!!||||||.!!:!!|||:! erSerSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTy 256708 : CGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTA : 256764 59 : sSerLeuIleIlePheThrIleValProCysIleLeuHisIleValTyrGluAlaGlu : 77 !.!!! !|||:!:||||||:!::!!||||||:!:||||||:!! !! !!!:! !!!: rGlySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAsp 256765 : TGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGAC : 256821 78 : SerSerArgMetLysMetLysIleIleGlyProValSerHisTrpLeuMetGlyGluL : 97 |||! ! ||||||:::||| ...||||||:!!|||||||||:!!!!:.!! SerPheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysA 256822 : AGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTG : 256881 98 : euAsnTyrCysCysLeuLeuSerLysThrAspAspIleIleArgCysIleLysHisVa : 116 !|||||| ! ||||||! !:!! ! ! |||||| ! !|||:!!:!!|||:! laAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIl 256882 : CCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATAT : 256938 117 : lGluArgAspTrpGlnValValGluAsnAlaSerSerArgGluMetMetLeuLysTyr : 135 !|||! !||||||::!:!!|||..!!..! !!.!..!!:!:!!:!!|||:!!||| !! eGluThrAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsn 256939 : AGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAAC : 256995 136 : AlaLysValGlyArgPheIleAlaPheIleAlaAlaPheCysMetHisSerGlyValL : 155 |||!:! !!||||||!:!:!:||| .!!..!||| ! !|||!!.|||||||||. AlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValP 256996 : GCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttt : 257055 156 : euAlaPheSerIleThrLysGlyPheLysLysMetMetPheLeuValGlyAsnAspSe : 174 .....||| ::::!!..!!.!.!.!!.! ! !!!:.!!! !|||||||||!!:!! heCysPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluTh 257056 : tctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAAC : 257112 175 : rTyrPheMetTyrProLeuProCysProValTyrThrAsnLeuLeuAspAlaArgPhe : 193 ! .!!:!! !|||||| ! !!||||||! !!!.||||||:!!!.! ! rThrIleValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGln 257113 : AACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAG : 257169 194 : SerProAlaAsnGluIleValPheValLeuGlnIleLeuSerGlyPheIleValThrS : 213 ||||||.!!|||||||||||| !! !!:!!|||! !! !|||..!.!!|||!.!|||! SerProThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrT 257170 : AGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTA : 257229 214 : erValThrValGlyAlaCysGlyLeuAlaAlaValLeuThrMetHisAlaSerGlyGl : 232 !! !||||||.!! !! !.!!||||||||||||!!!.!!! ||||||! !||||| hrSerThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGl 257230 : CTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCA : 257286 233 : nLeuAsnMetValValAlaArgLeuAspAsnLeuValAspThrLysValGluGluLys : 251 ||||!.!:!!:!!:!!:!! !!:!! .!.!!!|||:!! |||..!!:! nLeuThrValLeuMetSerTrpIleThrGluPheValAsn---------GluSerArg 257287 : GTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAAT---------GAGTCGAGG : 257334 252 : GlnGluAlaGlnThrValAlaGlnArgLysLeuGlyIleIleValGluHisHisLeuA : 271 .!.... :::||| !:!:!!:!!|||:!:||||||||||||||||||| AsnArgGluLysThrPheProPheLysGlnIleGlyValIleValGluHisHisLeuA 257335 : AATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAA : 257394 272 : rgThrLeuSerLeuIleAlaSerIleGluLys{V} >>>> Target Intron 1 : 282 ||..!|||!!!! ! ! !!!!||| ...{|} 76 bp rgValLeuArg***AspPheCysIleIleSer{V}-+ 257395 : GAGTGCTGAGGTAAGATTTTTGCATTATTTCC{G}tt..................... : 257430 283 : >>>> {al}MetAsnMetIleCysLeuValGluLeuValGlyCysThrIleAsnMet : 298 {||}|||||| ||||||!!!:!!|||||| !! !!||||||:!: !!!: ++{al}MetAsnArgIleCysPheLeuGluLeuPheArgCysThrLeuAlaIle 257431 : ....ag{TG}ATGAACCGAATATGTTTTTTAGAGTTGTTTAGATGCACGCTGGCTATA : 257551 299 : CysIleIleLysTyrSerPheLeuThr >>>> Target Intron 2 >>>> Gl : 308 |||!!::!: !|||! !.!!|||.!! 684 bp || CysMetLeuGlyTyrTyrIleLeuAla++ ++Gl 257552 : TGCATGCTGGGATACTACATTCTTGCGgt.........................agga : 258265 309 : u<->LysSerLysAspMetArgIleVal<-><->TyrAlaIleValTyrAlaSerMet : 324 | ...!!!:::|||:::::: ::: ||| !!!::!! ! !|||::: uTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheMetIleLeuIleSerLeu 258266 : ATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTATGATACTCATATcactt : 258322 325 : ValPheAsnIlePheIlePheCysTyrIleGlyGluIleValIleGluGln >>>> : 342 ||||||||||||:::...||||||||||||||||||:!!! !|||||| SerPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluGln++ 258323 : tctttcaatatttttgtaatatgttACATAGGTGAAATATTAACAGAACAGgt..... : 258378 343 : Target Intron 3 >>>> GlyGluArgValGlyLysLysValTyrMetThrGlu : 353 90 bp !!:!!!:!|||||| ! !||||||||||||!!: ++CysLysLysValGlyAspValValTyrMetThrAsp 258379 : ....................agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGAC : 258499 354 : TrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValLeuValIleSerArgSerS : 373 |||||| !|||||| !!|||! ! !|||! !|||:!!|||||||||:!!||||||| TrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLeuValIleAlaArgSerS 258500 : TGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGA : 258559 374 : erMetValValLysIleThrAlaGlyLysPheIleGlnIleSerIleThrThrPheGl : 392 ||:!!||||||:!!||||||||||||||||||......:::|||||| !||||||.! erValValValGlnIleThrAlaGlyLysPhePheHisMetSerIleTyrThrPheSe 258560 : GCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatGTCCATTTACACATTCAG : 258616 393 : yVal >>>> Target Intron 4 >>>> ValPheLysThrSerPheAlaTyrL : 402 !! ! 69 bp |||.!.||||||||||||||||||| rAsp++ ++ValIleLysThrSerPheAlaTyrL 258617 : CGATgt.........................agGTAATAAAAACCTCTTTCGCGTATT : 258715 403 : euAsnMetIleArg : 406 |||||:!::!:||| euAsnLeuLeuArg 258716 : TGAATTTACTGCGT : 258729 vulgar: gi|350422520|ref|XP_003493189.1| 19 406 . KQ414889.1 256649 258729 + 738 M 226 678 G 3 0 M 33 99 S 0 1 5 0 2 I 0 72 3 0 2 S 1 2 M 25 75 5 0 2 I 0 680 3 0 2 M 1 3 G 0 3 M 8 24 G 0 6 M 25 75 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256650 258729 738 + . gene_id 2 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256650 257427 . + . KQ414889.1 exonerate:protein2genome:local exon 256650 257427 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 257428 257429 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 257428 257503 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257502 257503 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257504 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257504 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258729 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258729 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256650 258729 738 + . alignment_id 2 ; Query gi|350422520|ref|XP_003493189.1| ; Align 256650 20 678 ; Align 257328 249 99 ; Align 257506 283 75 ; Align 258265 308 3 ; Align 258271 309 24 ; Align 258301 317 75 ; Align 258466 342 156 ; Align 258691 394 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 629 Query range: 11 -> 407 Target range: 208185 -> 212075 12 : AsnAlaPheTyrAlaHisAspTyrGluTyrSerIleGlnValAsnArgTrpLeuMetG : 31 ||| ! !||| !:!!||| ...!:!!:!:!!!:::!!||| !||| !:!!: AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 32 : lnProIleGlyAlaTrpProLysLeuThrLysThrAsnArgThrGlnArgLeuPheAl : 50 !! !||||||:!!||||||!:!! !! ! ! !::! !! !:!!!.! ! ysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHi 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCA : 208300 51 : aLysLeuLeuAsnPheIleCysHisSerLeuIleIlePheThrIleValProCysIle : 69 !! ||||||||| ! :!! !!|||!!!|||:!! !|||! !:!::!!||| ! ! sIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGly 208301 : TATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGC : 208357 70 : LeuHisIleValTyrGluAlaGluSerSerArgMetLysMetLysIleIleGlyProV : 89 :!! ! :!! !! !!.!|||..!! ! ! :!!:!:|||||| !.!! !!: MetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaL 208358 : ATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTC : 208417 90 : alSerHisTrpLeuMetGlyGluLeuAsnTyrCysCysLeuLeuSerLysThrAspAs : 108 !!||| !!:::!!|||!.! !!!.||| !:!! ! !::: !! !|| euSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAs 208418 : TGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGA : 208474 109 : pIleIleArgCysIleLysHisValGluArgAspTrpGlnValValGluAsnAlaSer : 127 |||| !:!|||:!!:!!:!!|||||| !||||||::! !||||||:!!! !..! pIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGlu 208475 : CATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAG : 208531 128 : SerArgGluMetMetLeuLysTyrAlaLysValGlyArgPheIleAlaPheIleAlaA : 147 ..!|||:!!!!:|||||| ! !!|||!.. !!!.!||| :!: ! ! |||..!! AspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysG 208532 : GACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCG : 208591 148 : laPheCysMetHisSerGlyValLeuAlaPheSerIleThrLysGlyPheLysLysMe : 166 .! !! !|||:!!.!!||||||::: ::: |||.!! ! !.!!! ::! lyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAs 208592 : GAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGA : 208648 167 : tMetPheLeuValGlyAsnAspSerTyrPheMetTyrProLeuProCysProValTyr : 185 ! ! !!:!!! !! !..!! !!:!! !||| !! !|||||| ! pLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValPro 208649 : CAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCT : 208705 186 : ThrAsnLeuLeuAspAlaArgPheSerProAlaAsnGluIleValPheValLeuGlnI : 205 ! ! !:!!||||||!.!|||!:!||||||!.!||||||||| !!!:!..!:!!|||: LysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnL 208706 : AAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAAT : 208765 206 : leLeuSerGlyPheIleValThrSerValThrValGlyAlaCysGlyLeuAlaAlaVa : 224 !:||||||||||||:!!!.! !!:!:!!|||||||||||||||||||||||||||:! euLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLe 208766 : TGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCT : 208822 225 : lLeuThrMetHisAlaSerGlyGlnLeuAsnMetValValAlaArgLeuAspAsnLeu : 243 !|||.!!|||||||||!!!|||||||||.!.!!::!!:!!:!! !!:!!!!:!!.||| uLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeu 208823 : GCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTG : 208879 244 : ValAspThrLysValGluGluLysGlnGluAlaGlnThrValAlaGlnArgLysLeuG : 263 |||||| !::!! !!!:|||:!!:!!.!. !.!.!:!!:!|||! ValAspGlyArgGluAspGluGluLysAsn------------LeuAspGlnArgLeuA 208880 : GTCGATGGACGGGAGGACGAGGAGAAGAAT------------TTGGATCAGAGGTTGG : 208927 264 : lyIleIleValGluHisHisLeuArgThrLeu{Se} >>>> Target Intron 1 : 274 .!! !|||||||||!!.|||:!!|||..!:!!{!:} 1536 bp laAsnIleValGluGlnHisValArgValIle{As}++ 208928 : CTAATATCGTGGAGCAGCATGTTCGAGTGATC{AA}gt.................... : 208964 275 : >>>> {r}LeuIleAlaSerIleGluLysValMetAsnMetIleCysLeuValGlu : 290 {!}!!!|||||| !! !|||!!.:!!:!!:!! !|||! |||:!!||| ++{n}PheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGlu 208965 : .....ag{T}TTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAA : 210544 291 : LeuValGlyCysThrIleAsnMetCysIleIleLysTyrSerPhe >>>> Target : 306 :!!||||||||||||:!:|||||||||.!!:!! |||! ! 7 MetValGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThr-+ 210545 : ATGGTGGGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGat........... : 210594 307 : Intron 2 >>>> LeuThrGluLysSerLysAspMetArgIleValTyrAlaIle : 319 5 bp ! ! !...|||..! !! !!!:!:..!||| !:!! +-TrpAspSerLysAspProIleSerSerLeuThrTyrIleVal 210595 : ..............aaTGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTA : 210706 320 : ValTyrAlaSerMetValPheAsnIlePheIlePheCysTyrIleGlyGluIleValI : 339 :!! !.!!|||:!:..!|||||||||||||||||||||||||||||||||:!::!! LeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuA 210707 : CTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGG : 210766 340 : leGluGln >>>> Target Intron 3 >>>> GlyGluArgValGlyLysLys : 348 !|||||| 999 bp !! !!:!||||||:!!||| laGluGln++ ++ThrValLysValGlyGluLys 210767 : CTGAACAggt.........................agACAGTAAAAGTTGGAGAAAAG : 211792 349 : ValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValLeuV : 368 !||||||! !!!:|||||||||:!!||| |||! !!.!|||! !:!! !|||: SerTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValValProLeuM 211793 : TCTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGA : 211852 369 : alIleSerArgSerSerMetValValLysIleThrAlaGlyLysPheIleGlnIleSe : 387 !!||||||! !||| ! !..!..!|||||||||||||||!!..!!||| :!!|| etIleSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleValLeuSe 211853 : TGATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTTCTTTC : 211909 388 : rIleThrThrPheGlyVal >>>> Target Intron 4 >>>> ValPheLysT : 397 ||||!:!!:!||||||! ! 104 bp |||.!!|||| rIleSerSerPheGlyAsp++ ++ValIleLysT 211910 : AATCAGTAGTTTCGGTGACgt.........................agGTTATCAAGA : 212043 398 : hrSerPheAlaTyrLeuAsnMetIleArgThr : 407 ||||| ! .!!||||||||||||:!!|||||| hrSerValThrTyrLeuAsnMetLeuArgThr 212044 : CTTCGGTAACATACTTGAACATGCTACGAACA : 212075 vulgar: gi|350422520|ref|XP_003493189.1| 11 407 . KQ414889.1 208185 212075 + 629 M 242 726 G 4 0 M 16 48 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 31 93 5 0 2 I 0 71 3 0 2 M 36 108 5 0 2 I 0 995 3 0 2 M 52 156 5 0 2 I 0 100 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 212075 629 + . gene_id 3 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208186 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208961 . + . insertions 0 ; deletions 4 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210591 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210591 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210592 210593 . + . intron_id 2 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 210592 210666 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210665 210666 . + . intron_id 1 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 210667 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210667 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211929 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 211930 211931 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 211930 212033 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 212032 212033 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 212034 212075 . + . KQ414889.1 exonerate:protein2genome:local exon 212034 212075 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208186 212075 629 + . alignment_id 3 ; Query gi|350422520|ref|XP_003493189.1| ; Align 208186 12 726 ; Align 208912 258 48 ; Align 210499 275 93 ; Align 210667 306 108 ; Align 211774 342 156 ; Align 212034 394 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 612 Query range: 17 -> 408 Target range: 278567 -> 280548 18 : AspTyrGluTyrSerIleGlnValAsnArgTrpLeuMetGlnProIleGlyAlaTrpP : 37 |||!:: !||||||:!!|||:!!|||||||||!!!:!::!!|||||||||!.!|||| AspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpP 278568 : GATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGC : 278625 38 : roLysLeuThrLysThrAsnArgThrGlnArgLeuPheAlaLysLeuLeuAsnPheIl : 56 || ! ! ..!!.!! ! !:!!!:!:!! !:!! !:!!||| !!.|| roLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIl 278626 : CTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAAT : 278682 57 : eCysHisSerLeuIleIlePheThrIleValProCysIleLeuHisIleValTyrGlu : 75 | !! !! !|||||| !||| !:!:||||||||| !||| !! !||| !!!: eSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAsp 278683 : CAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGAC : 278739 76 : AlaGluSerSer<->ArgMetLysMetLysIleIleGlyProValSerHisTrpLeuM : 94 ! .!!..! !! !|||!!:|||!!:|||||||||:!!||| !!! !| LysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrM 278740 : AAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGA : 278799 95 : etGlyGluLeuAsnTyrCysCysLeuLeuSerLysThrAspAspIleIleArgCysIl : 113 ||!.! !:!!!!.|||! ! !|||:!!|||::: !! ! ! ||| !!:!|||:! etAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysVa 278800 : TGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGT : 278856 114 : eLysHisValGluArgAspTrpGlnValVal<-><-><->GluAsnAlaSerSerArg : 129 :!!. !!:!!...! !||||||...:!!..! ...... ......||| lAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArg 278857 : GAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagaga : 278913 130 : GluMetMetLeuLysTyrAlaLysValGlyArgPheIleAlaPheIleAlaAlaPheC : 149 |||:::||| ! ! !|||!:!:!!||||||! !:!:|||.!!.!!::!||| !! GluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyP 278914 : gagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTT : 278973 150 : ysMetHisSerGlyValLeuAlaPheSerIleThrLysGlyPheLysLysMetMetPh : 168 !|||:!!||||||! !:!! !!:!!!! !..!! ! !!!. !:!: heMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgTh 278974 : TCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCAC : 279030 169 : eLeuValGlyAsnAspSerTyrPheMetTyrProLeuProCysProValTyrThrAsn : 187 !:!! ! !|||!:! ! :!! !!! ! !!! !|||:!!||| !..! rGluIle---IleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGly 279031 : GGAGATC---ATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGC : 279084 188 : LeuLeuAspAlaArgPheSerProAlaAsnGluIleValPheValLeuGlnIleLeuS : 207 ||||||||| !!||| !||||||:!! !||||||||| !!:!!||| !|||: LeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuA 279085 : CTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGG : 279144 208 : erGlyPheIleValThrSerValThrValGlyAlaCysGlyLeuAlaAlaValLeuTh : 226 !!!.!|||:!!:!! !|||||||||||||||||||||.!!||| !||||||!!!.. laAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheVa 279145 : CCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGT : 279201 227 : rMetHisAlaSerGlyGlnLeuAsnMetValValAlaArgLeuAspAsnLeuValAsp : 245 !||||||!.!!!!||||||!!!!..!!::!!|||.!!!:!||||||!!.|||:!!||| lMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAsp 279202 : CATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGAC : 279258 246 : ThrLysValGluGluLysGlnGluAlaGlnThrValAlaGlnArgLysLeuGlyIleI : 265 !|||:!!! !!:!:!!... !...||| !! !|||||| |||||| !| ---GlyValLysGlyArgLysSerLeuSerThrHisGluGlnArg---LeuGlyAspI 279259 : ---GGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGA---CTGGGAGATA : 279312 266 : leValGluHisHisLeuArgThrLeu{Se} >>>> Target Intron 1 >>>> : 274 ||:!!||||||||||||!:!! !|||{.!} 571 bp leIleGluHisHisLeuLysIleLeu{Gl}++ + 279313 : TCATCGAGCATCATCTGAAGATACTG{GG}gt.........................a : 279910 275 : {r}LeuIleAlaSerIleGluLysValMetAsnMetIleCysLeuValGluLeuVal : 292 {!}!!!|||:!!..!|||||| !:!!:!!||| ||||||!!!||||||:!!:!! +{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValIle 279911 : g{T}TTTATATCGCAAATCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTGATT : 279964 293 : GlyCysThrIleAsnMetCysIleIleLysTyrSerPheLeuThr >>>> Target : 308 |||||||||:!:|||!!:|||.!!:!:! !|||! !!!.|||||| 8 GlyCysThrLeuAsnIleCysPheLeuThrTyrTyrLeuLeuThr++ 279965 : GGTTGCACGTTGAACATATGCTTTTTGACATATTATTTACTCACGgt........... : 280014 309 : Intron 2 >>>> GluLysSerLysAspMetArgIleValTyrAlaIleValTyr : 321 9 bp :!!!!...! ! !.!!..!||| !!!: !! ! ++GlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeu 280015 : ..............agCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTC : 280140 322 : AlaSerMetValPheAsnIlePheIlePheCysTyrIleGlyGluIleValIleGluG : 341 !|||:!:..!||||||:!!||||||.!!||||||||||||||||||:!! !|||| IleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluG 280141 : ATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAAC : 280200 342 : ln >>>> Target Intron 3 >>>> GlyGluArgValGlyLysLysValTyr : 350 || 74 bp !! !!:!|||||| !..!..!||| ln++ ++CysLeuLysValGlyValSerThrTyr 280201 : aggt.........................agTGCTTAAAAGTCGGCGTGTCAACTTAC : 280301 351 : MetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValLeuValIleS : 370 |||! !!!:||||||||||||||| |||! !|||! !||||||:!!|||:!!.!!: MetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheA 280302 : ATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCG : 280361 371 : erArgSerSerMetValValLysIleThrAlaGlyLysPheIleGlnIleSerIleTh : 389 !! !|||!:! !:!!|||:!!||||||||||||.!!|||.!.:!!|||:!!!: laValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSe 280362 : CCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAG : 280418 390 : rThrPheGlyVal >>>> Target Intron 4 >>>> ValPheLysThrSerP : 399 !!:!||| !! ! 71 bp |||!!.||||||:!!| rSerPheCysSer++ ++ValLeuLysThrAlaP 280419 : CAGCTTCTGCAGCgt.........................agGTGTTAAAAACGGCAT : 280519 400 : heAlaTyrLeuAsnMetIleArgThrMet : 408 |||||||||||!:!:!::!!||||||:!: heAlaTyrLeuSerLeuLeuArgThrLeu 280520 : TCGCATATCTGAGCTTATTACGTACGCTT : 280548 vulgar: gi|350422520|ref|XP_003493189.1| 17 408 . KQ414889.1 278567 280548 + 612 M 62 186 G 0 3 M 44 132 G 0 9 M 47 141 G 1 0 M 74 222 G 1 0 M 14 42 G 1 0 M 12 36 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 85 3 0 2 M 34 102 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278568 280548 612 + . gene_id 4 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278568 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278568 279340 . + . insertions 12 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280100 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280099 280100 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280101 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280101 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280548 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280548 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278568 280548 612 + . alignment_id 4 ; Query gi|350422520|ref|XP_003493189.1| ; Align 278568 18 186 ; Align 278757 80 132 ; Align 278898 124 141 ; Align 279039 172 222 ; Align 279261 247 42 ; Align 279303 262 36 ; Align 279913 275 99 ; Align 280101 308 102 ; Align 280277 342 156 ; Align 280504 394 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 596 Query range: 17 -> 404 Target range: 284514 -> 287252 18 : AspTyrGluTyrSerIleGlnValAsnArgTrpLeuMetGlnProIleGlyAlaTrpP : 37 |||!:: !||||||:!!|||:!!|||||||||!!!:!::!!|||||||||!.!|||| AspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpP 284515 : GATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGC : 284572 38 : roLysLeuThrLysThrAsnArgThrGlnArgLeuPheAlaLysLeuLeuAsnPheIl : 56 || ! ! ..!!.!! ! !:!!!:!:!! !:!! !:!!||| !!.|| roLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIl 284573 : CTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAAT : 284629 57 : eCysHisSerLeuIleIlePheThrIleValProCysIleLeuHisIleValTyrGlu : 75 | !! !! !|||||| !||| !:!:||||||||| !||| !! !||| !!!: eSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAsp 284630 : CAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGAC : 284686 76 : AlaGluSerSer<->ArgMetLysMetLysIleIleGlyProValSerHisTrpLeuM : 94 ! .!!..! !! !|||!!:|||!!:|||||||||:!!||| !!! :!!| LysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetM 284687 : AAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGA : 284746 95 : etGlyGluLeuAsnTyrCysCysLeuLeuSerLysThrAspAspIleIleArgCysIl : 113 ||!.!! !:!!!!.|||! ! !|||:!!|||::: !! ! ! ||| !!:!|||:! etAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysVa 284747 : TGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGT : 284803 114 : eLysHisValGluArgAspTrpGlnValValGluAsnAlaSer<-><-><->SerArg : 129 :||| !!:!!... !||||||...:!!..! ::: !||| ...||| lLysAspIleArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArg 284804 : GAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagaga : 284860 130 : GluMetMetLeuLysTyrAlaLysValGlyArgPheIleAlaPheIleAlaAlaPheC : 149 |||:::||| ! ! !|||!:!:!!||||||! !:!:|||.!!.!!..!||| !! GluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyP 284861 : gagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTT : 284920 150 : ysMetHisSerGlyValLeuAlaPheSerIleThrLysGlyPheLysLysMetMetPh : 168 !|||:!!||||||! !!!! !!:!!!!! ..!! ! !!!. ! !:!: heMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgTh 284921 : TCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCAC : 284977 169 : eLeuValGlyAsnAspSerTyrPheMetTyrProLeuProCysProValTyrThrAsn : 187 !:!! ! !|||!:! ! !:!! !!! ! !!! !|||:!!||| !..! rGluIle---IleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGly 284978 : GGAGATC---ATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGC : 285031 188 : LeuLeuAspAlaArgPheSerProAlaAsnGluIleValPheValLeuGlnIleLeuS : 207 ||||||||| !!||| !||||||:!! !||||||||| !!:!!||| !|||: LeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuA 285032 : CTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGG : 285091 208 : erGlyPheIleValThrSerValThrValGlyAlaCysGlyLeuAlaAlaValLeuTh : 226 !!!.!|||:!!:!! !|||||||||||||||||||||.!!||||||||||||!!!.. laAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheVa 285092 : CCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGT : 285148 227 : rMetHisAlaSerGlyGlnLeuAsnMetValValAlaArgLeuAspAsnLeuValAsp : 245 !||||||!.!!!!||||||!!!!..!!::!!|||.!!!:!||||||!!.||||||||| lMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAsp 285149 : CATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGAC : 285205 246 : ThrLysValGluGluLysGlnGluAlaGlnThrValAlaGlnArgLysLeuGlyIleI : 265 !|||:!!! !!:!:!!! ! !...||| !! !|||||| |||||| !| ---GlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArg---LeuGlyAspI 285206 : ---GGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGA---CTGGGAGATA : 285259 266 : leValGluHisHisLeuArgThrLeu{Se} >>>> Target Intron 1 >>>> : 274 ||:!!||||||||||||!:!! !|||{.!} 1411 bp leIleGluHisHisLeuLysIleLeu{Gl}++ + 285260 : TCATCGAGCATCATCTGAAGATACTG{GG}gt.........................a : 286697 275 : {r}LeuIleAlaSerIleGluLysValMetAsnMetIleCysLeuValGluLeuVal : 292 {!}!!!|||:!!..!|||||| !:!!:!:||| ||||||!!!||||||:!!:!! +{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValIle 286698 : g{T}TTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATT : 286751 293 : GlyCysThrIleAsnMetCysIleIleLysTyrSerPheLeuThr >>>> Target : 308 |||||||||:!:|||!!:|||.!!:!: !|||! !!!.|||||| 8 GlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeuThr++ 286752 : GGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTACTGACGgt........... : 286801 309 : Intron 2 >>>> GluLysSerLysAspMet<->ArgIleValTyrAlaIleVal : 320 6 bp |||:!!|||:!! !!!: ! !|||..!|||..!! :!! -+GluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeu 286802 : ..............ggGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTG : 286924 321 : TyrAlaSerMetValPheAsnIlePheIlePheCysTyrIleGlyGluIleValIleG : 340 !.!|||.!...!||||||:!!||||||.!!||||||||||||||||||:!! !| LeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerG 286925 : CTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCG : 286984 341 : luGln >>>> Target Intron 3 >>>> GlyGluArgValGlyLysLysVal : 349 ||||| 74 bp !! !!:!|||||| !..!..! luGln++ ++CysLeuLysValGlyLeuSerThr 286985 : AACaggt.........................agtGCTTAAAAGTCGGCTTGTCAACT : 287085 350 : TyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValLeuValI : 369 ||||||! !!!:||||||||||||||| |||||||||! !||||||:!!|||:!!. TyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIleP 287086 : TACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATAT : 287145 370 : leSerArgSerSerMetValValLysIleThrAlaGlyLysPheIleGlnIleSerIl : 388 !!:!! !|||!:! !:!!|||:!!||||||||||||.!!|||.!.:!!|||:! heAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLe 287146 : TCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTT : 287202 389 : eThrThrPheGlyValValPheLysThrSerPheAlaTyrLeuAsnMet : 404 !!:!!:!||| !! !||| !! ! !!:!!!.:!!|||! !:!!:!! uSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 287203 : AAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 287252 vulgar: gi|350422520|ref|XP_003493189.1| 17 404 . KQ414889.1 284514 287252 + 596 M 62 186 G 0 3 M 48 144 G 0 9 M 43 129 G 1 0 M 74 222 G 1 0 M 14 42 G 1 0 M 12 36 S 0 2 5 0 2 I 0 1407 3 0 2 S 1 1 M 33 99 5 0 2 I 0 82 3 0 2 M 6 18 G 0 3 M 28 84 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284515 287252 596 + . gene_id 5 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284515 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284515 285287 . + . insertions 12 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286698 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286884 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286883 286884 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 286885 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286885 286989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284515 287252 596 + . alignment_id 5 ; Query gi|350422520|ref|XP_003493189.1| ; Align 284515 18 186 ; Align 284704 80 144 ; Align 284857 128 129 ; Align 284986 172 222 ; Align 285208 247 42 ; Align 285250 262 36 ; Align 286700 275 99 ; Align 286885 308 18 ; Align 286906 314 84 ; Align 287064 342 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 594 Query range: 19 -> 274 Target range: 259769 -> 260525 20 : GluTyrSerIleGlnValAsnArgTrpLeuMetGlnProIleGlyAlaTrpProLysL : 39 !!:||||||:!!||| !!|||||||||!!!:!!:!!|||||||||||||||||| ! AspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS 259770 : GACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTT : 259827 40 : euThrLysThrAsnArgThrGlnArgLeuPheAlaLysLeuLeuAsnPheIleCysHi : 58 !:!!...|||!.!||| !:!!!:!:!!.!!:!! :!!|||! !|||||||||:! erSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTy 259828 : CATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTA : 259884 59 : sSerLeuIleIlePheThrIleValProCysIleLeuHisIleValTyrGluAlaGlu : 77 !||| !|||:!: !!|||:!::!!||||||:!!||||||!!::!! !||| !||| rSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGlu 259885 : CAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAG : 259941 78 : SerSerArgMetLysMetLysIleIleGlyProValSerHisTrpLeuMetGlyGluL : 97 |||! ! !||||||! !|||:!::!!||||||:!!!!!||||||!!!:!:||| : SerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysI 259942 : AGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTA : 260001 98 : euAsnTyrCysCysLeuLeuSerLysThrAspAspIleIleArgCysIleLysHisVa : 116 !!|||||| ||||||! !!:! ! ||||||:!!!!!|||:!::!!||||| leAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisVa 260002 : TTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGT : 260058 117 : lGluArgAspTrpGlnValValGluAsnAlaSerSerArgGluMetMetLeuLysTyr : 135 ||||!.!||||||::!:!!:!! !!..! !!.!..!!:!.!.:!!||||||!:!||| lGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyr 260059 : GGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATAC : 260115 136 : AlaLysValGlyArgPheIleAlaPheIleAlaAlaPheCysMetHisSerGlyValL : 155 |||||| !!||||||!:!:!!||| ! !..!||| !! !:!!!!..!!||||||| AlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValL 260116 : GCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTC : 260175 156 : euAlaPheSerIleThrLysGlyPheLysLysMetMetPheLeuValGlyAsnAspSe : 174 ||..!|||!!!:!:..!! !! !!!.!..! ! !:!!.!.! !|||||||||!!:!! euCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluTh 260176 : TGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGAC : 260232 175 : rTyrPheMetTyrProLeuProCysProValTyrThrAsnLeuLeuAspAlaArgPhe : 193 ! .!!:!::!!! !||||||||| !!||||||! !.!.|||:!!:!!!.!!.! ! rArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAsp 260233 : GAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGAC : 260289 194 : SerProAlaAsnGluIleValPheValLeuGlnIleLeuSerGlyPheIleValThrS : 213 |||||| !||||||||||||.!!|||:!!|||.!!:!!|||||||||||||||!.!| SerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnS 260290 : AGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATT : 260349 214 : erValThrValGlyAlaCysGlyLeuAlaAlaValLeuThrMetHisAlaSerGlyGl : 232 || !||||||||| !! !.!!|||||||||||||||||| ||||||!!!||||| erSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGl 260350 : CGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCA : 260406 233 : nLeuAsnMetValValAlaArgLeuAspAsnLeuValAspThrLysValGluGluLys : 251 |||||||:!!:!!:!!! ! !!:!! .!.!!!|||||| !..! !.!...!||| nLeuAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLys 260407 : GTTGAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAG : 260463 252 : GlnGluAlaGlnThrValAlaGlnArgLysLeuGlyIleIleValGluHisHisLeuA : 271 :!!:!!|||! ! !:!:!!:!!|||:!:||||||||||||||||||| LysLysAlaProPhe---------LysGluIleGlyValIleValGluHisHisLeuA 260464 : AAAAAGGCTCCTTTC---------AAGGAGATCGGAGTGATTGTCGAACATCATTTGA : 260514 272 : rgThrLeuSer : 274 ||.!!|||!!! rgAlaLeuThr 260515 : GAGCACTCACG : 260525 vulgar: gi|350422520|ref|XP_003493189.1| 19 274 . KQ414889.1 259769 260525 + 594 M 237 711 G 3 0 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259770 260525 594 + . gene_id 6 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259770 260525 . + . KQ414889.1 exonerate:protein2genome:local exon 259770 260525 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 259770 260525 594 + . alignment_id 6 ; Query gi|350422520|ref|XP_003493189.1| ; Align 259770 20 711 ; Align 260481 260 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 562 Query range: 19 -> 273 Target range: 266634 -> 267387 20 : GluTyrSerIleGlnValAsnArgTrpLeuMetGlnProIleGlyAlaTrpProLysL : 39 !!:||||||:!:|||:!!|||||||||!!!:!!:!!|||||||||||||||||| !| AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProL 266635 : GATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGT : 266692 40 : euThrLysThrAsnArgThrGlnArgLeuPheAlaLysLeuLeuAsnPheIleCysHi : 58 ||:!! |||::!!:! !:!!|||:!! !!:!! ! !|||! ! !!||||||:! euSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266693 : TGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 59 : sSerLeuIleIlePheThrIleValProCysIleLeuHisIleValTyrGluAlaGlu : 77 !!!!! !|||:!:||||||:!!:!!||||||:!:!!!|||:!!||| |||! !||| rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 78 : SerSerArgMetLysMetLysIleIleGlyProValSerHisTrpLeuMetGlyGluL : 97 |||! !|||! !|||:!!|||:!:.!!||||||:!!|||||||||!!!:!:|||! !: SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 98 : euAsnTyrCysCysLeuLeuSerLysThrAspAspIleIleArgCysIleLysHisVa : 116 !!|||||| ! |||||| !:::!:! ! !!:||| ! !!|||:!!:!!|||:! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 117 : lGluArgAspTrpGlnValValGluAsnAlaSerSerArgGluMetMetLeuLysTyr : 135 !:!!! !||||||::!:!!||| !.. !!..!..!!:!:!!:!!||||||||| !! tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 136 : AlaLysValGlyArgPheIleAlaPheIleAlaAlaPheCysMetHisSerGlyValL : 155 |||!:!:!!||||||!:!||||||.!..!!..!||| ! !|||!!.!!!||||||| AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 156 : euAlaPheSerIleThrLysGlyPheLysLysMetMetPheLeuValGlyAsnAspSe : 174 ||!.!!:!!!!:!:! !! !!.!|||! ! !..!! ! !|||||||||!!:!! euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 175 : rTyrPheMetTyrProLeuProCysProValTyrThrAsnLeuLeuAspAlaArgPhe : 193 ! .!!:!::!!! !||||||||| !!||||||! !!!.:!!:!!! !.! ! ! rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 194 : SerProAlaAsnGluIleValPheValLeuGlnIleLeuSerGlyPheIleValThrS : 213 ||||||.!!||||||||||||.!!|||! !|||.!!:!!|||||||||||||||!.!| SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 214 : erValThrValGlyAlaCysGlyLeuAlaAlaValLeuThrMetHisAlaSerGlyGl : 232 || !..!|||||||||! !.!!||||||||||||!!!.!! ||||||!!!||||| erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 233 : nLeuAsnMetValValAlaArgLeuAspAsnLeuValAspThrLysValGluGluLys : 251 ||||!:!:!!:!!:!! ! !!:!! ! .!.!!!|||:!! ..!...!:! nLeuSerValLeuMetMetTrpIleLysGluPheValAsn---------ArgSerArg 267272 : GCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAAC---------CGATCCAGA : 267319 252 : GlnGluAlaGlnThrValAlaGlnArgLysLeuGlyIleIleValGluHisHisLeuA : 271 .!.... !:!!!.!|||..! !|||:!!|||:!::!!|||||||||||||||| AspSerAsnLysAsnValCysPheAspLysIleGlyValValValGluHisHisLeuA 267320 : GATAGCAATAAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGA : 267379 272 : rgThrLeu : 273 ||..!||| rgValLeu 267380 : GAGTTTTG : 267387 vulgar: gi|350422520|ref|XP_003493189.1| 19 273 . KQ414889.1 266634 267387 + 562 M 226 678 G 3 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266635 267387 562 + . gene_id 7 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266635 267387 . + . KQ414889.1 exonerate:protein2genome:local exon 266635 267387 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 266635 267387 562 + . alignment_id 7 ; Query gi|350422520|ref|XP_003493189.1| ; Align 266635 20 678 ; Align 267313 249 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 535 Query range: 19 -> 273 Target range: 262846 -> 263599 20 : GluTyrSerIleGlnValAsnArgTrpLeuMetGlnProIleGlyAlaTrpProLysL : 39 !!:||||||:!:|||:!!||||||||||||:!!:!!|||||||||||||||||| !! AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 40 : euThrLysThrAsnArgThrGlnArgLeuPheAlaLysLeuLeuAsnPheIleCysHi : 58 !.!!..!! !:::|||! !:!!|||:!!.!! ! ||||||! ! !!:!!|||:! erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 59 : sSerLeuIleIlePheThrIleValProCysIleLeuHisIleValTyrGluAlaGlu : 77 !!!!||||||:!!! !|||:!!:!!|||! !||||||||||||||| ||||||||| rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 78 : SerSerArgMetLysMetLysIleIleGlyProValSerHisTrpLeuMetGlyGluL : 97 !:!! !!.!||||||:!!:!!:!!:!!||||||:!!.!!!!.|||!!!:!:||| !: AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 98 : euAsnTyrCysCysLeuLeuSerLysThrAspAspIleIleArgCysIleLysHisVa : 116 !!|||||| !!! |||||| ! ! !:! ! |||||| ! !!|||:!::!!||||| leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 117 : lGluArgAspTrpGlnValValGluAsnAlaSerSerArgGluMetMetLeuLysTyr : 135 |:!!..!|||||| :!!||| !.. !..!..!!:!...!!:||||||||| !! lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 136 : AlaLysValGlyArgPheIleAlaPheIleAlaAlaPheCysMetHisSerGlyValL : 155 |||||| !||||||!:!:!:||| ! !..!|||.!!! !|||!!.!!!.!!:!!: AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 156 : euAlaPheSerIleThrLysGlyPheLysLysMetMetPheLeuValGlyAsnAspSe : 174 !!..! !!!:!!..!! !!.!|||! ! !..!:!!.!! !! !||||||!!:!! etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 175 : rTyrPheMetTyrProLeuProCysProValTyrThrAsnLeuLeuAspAlaArgPhe : 193 ! .!!:!: ! !||||||||||||||||||! !.!.:!!:!! !.! ! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 194 : SerProAlaAsnGluIleValPheValLeuGlnIleLeuSerGlyPheIleValThrS : 213 !:!|||.!!||||||||| !!.!!!.! !|||.!!|||||||||||||||||||||: AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 214 : erValThrValGlyAlaCysGlyLeuAlaAlaValLeuThrMetHisAlaSerGlyGl : 232 !!..!||||||||||||! !|||:!!.!!||||||!!!.!! ||||||!!!||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 233 : nLeuAsnMetValValAlaArgLeuAspAsnLeuValAspThrLysValGluGluLys : 251 |||||||:!!:!!:!!:!! !!:!! .!.!!!|||:!! :!!...!:! nLeuAsnValLeuMetSerTrpIleThrGluPheValAsn---------GlnSerArg 263484 : GTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAAC---------CAGTCCAGG : 263531 252 : GlnGluAlaGlnThrValAlaGlnArgLysLeuGlyIleIleValGluHisHisLeuA : 271 .!.||| !:!!!.!:!! ! ! !:!!:!!|||:!:||||||||||||||||||| AspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuA 263532 : GATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGA : 263591 272 : rgThrLeu : 273 ||..!||| rgValLeu 263592 : GAGTTCTG : 263599 vulgar: gi|350422520|ref|XP_003493189.1| 19 273 . KQ414889.1 262846 263599 + 535 M 226 678 G 3 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 263599 535 + . gene_id 8 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262847 263599 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263599 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 262847 263599 535 + . alignment_id 8 ; Query gi|350422520|ref|XP_003493189.1| ; Align 262847 20 678 ; Align 263525 249 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 531 Query range: 19 -> 273 Target range: 274380 -> 275133 20 : GluTyrSerIleGlnValAsnArgTrpLeuMetGlnProIleGlyAlaTrpProLysL : 39 !!:||||||:!:|||:!!|||||||||!!!:!!:!!|||||||||||||||||| ! AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuA 274381 : GACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAG : 274438 40 : euThrLysThrAsnArgThrGlnArgLeuPheAlaLysLeuLeuAsnPheIleCysHi : 58 !:!! |||!..!:! !:!!|||:!!.!!:!! ! |||||| |||:::|||:! laSerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTy 274439 : CCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctA : 274495 59 : sSerLeuIleIlePheThrIleValProCysIleLeuHisIleValTyrGluAlaGlu : 77 !!!!!!!|||:!!! !|||:!!:!!||| !!|||!!!||||||:!! ! !! !||| rCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGlu 274496 : CTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAA : 274552 78 : SerSerArgMetLysMetLysIleIleGlyProValSerHisTrpLeuMetGlyGluL : 97 ||| !!.!:!!|||:!!|||:!::!!||||||:!!.!!||||||!!!!!:|||! !: SerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyI 274553 : AGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAA : 274612 98 : euAsnTyrCysCysLeuLeuSerLysThrAspAspIleIleArgCysIleLysHisVa : 116 !!|||||| ! |||||| !:::!:! ! !!:||| ! !!|||:!::!!|||:! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 274613 : TTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACAT : 274669 117 : lGluArgAspTrpGlnValValGluAsnAlaSerSerArgGluMetMetLeuLysTyr : 135 !:!!! !||||||::!:!!||| !.. !!..!..!!:!:!!:!!||||||||| !! tGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsn 274670 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAAC : 274726 136 : AlaLysValGlyArgPheIleAlaPheIleAlaAlaPheCysMetHisSerGlyValL : 155 ||||||:!!||||||!:!:!!|||.!!.!!..!||| ! !|||!!.!!!||||||| AlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 274727 : GCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTC : 274786 156 : euAlaPheSerIleThrLysGlyPheLysLysMetMetPheLeuValGlyAsnAspSe : 174 ||..!!:!!!!:!:! !! !!.!|||! ! !..!! !!! !|||||||||!!:!! euCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluTh 274787 : TCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGAC : 274843 175 : rTyrPheMetTyrProLeuProCysProValTyrThrAsnLeuLeuAspAlaArgPhe : 193 ! !:!!:!! !||||||||| !!.!|||! !!!.:!!:!!! !.! ! rArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThr 274844 : CAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACG : 274900 194 : SerProAlaAsnGluIleValPheValLeuGlnIleLeuSerGlyPheIleValThrS : 213 ||||||.!!||||||||||||.!!!.!! !|||.!!:!!|||||||||||||||!.!| SerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnS 274901 : AGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATT : 274960 214 : erValThrValGlyAlaCysGlyLeuAlaAlaValLeuThrMetHisAlaSerGlyGl : 232 || !.!!|||||||||! !.!!||||||||||||!!!.!! ||||||! !||||| erSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGl 274961 : CGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCA : 275017 233 : nLeuAsnMetValValAlaArgLeuAspAsnLeuValAspThrLysValGluGluLys : 251 ||||!:!:!!:!!:!! ! !!:!! !.!.!!!|||:!! .!....!:! nLeuSerValLeuMetIleTrpIleThrGluPheValAsn---------HisSerArg 275018 : GTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAAT---------CATTCCAGG : 275065 252 : GlnGluAlaGlnThrValAlaGlnArgLysLeuGlyIleIleValGluHisHisLeuA : 271 .!.::: :::...||| !:!!:!!|||:!::!!|||||||||||||||| AspGlnAsnLysAsnValTyrPheSerGluIleGlyValValValGluHisHisLeuA 275066 : GAtcagaataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGA : 275125 272 : rgThrLeu : 273 ||..!||| rgValLeu 275126 : GGGTACTC : 275133 vulgar: gi|350422520|ref|XP_003493189.1| 19 273 . KQ414889.1 274380 275133 + 531 M 226 678 G 3 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274381 275133 531 + . gene_id 9 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274381 275133 . + . KQ414889.1 exonerate:protein2genome:local exon 274381 275133 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 274381 275133 531 + . alignment_id 9 ; Query gi|350422520|ref|XP_003493189.1| ; Align 274381 20 678 ; Align 275059 249 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 424 Query range: 4 -> 249 Target range: 217126 -> 217861 5 : SerSerGluProProIleSerAsnAlaPheTyrAlaHisAspTyrGluTyrSerIleG : 24 !.!..!:!! !!|||! !!!!:!! ! ||| ::: ... ||||||| LysGluGlnSerProArgThrAspTyrGluTyrGluLysAsnIleAsnLeuSerIleG 217127 : AAGGAACAATCCCCCAGAACCGACTACGAgtacgagaaaaatataaatctcaGTATCC : 217184 25 : lnValAsnArgTrpLeuMetGlnProIleGlyAlaTrpProLysLeuThrLysThrAs : 43 || !||||||||||||:!!:!!|||!!:||| !||||||!!.! ! !! |||!. lnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnSerArgThrThrTh 217185 : AATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACTCACGTACCACCAC : 217241 44 : nArgThrGlnArgLeuPheAlaLysLeuLeuAsnPheIleCysHisSerLeuIleIle : 62 !|||:!!!:!!:!:!!.!! !||||||:!!||| !:!!|||:!!.!!||||||! ! rArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSer 217242 : CAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTACGGTTTGATAAGC : 217298 63 : PheThrIleValProCysIleLeuHisIleValTyrGluAlaGluSerSerArgMetL : 82 ||| !.!!||||||||| !:!!:!!:!: !! !|||!.!|||..! ! ! | PheLeuPheValProCysSerMetTyrValPheLeuGluValGluAspLeuTyrAspL 217299 : TTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAGATCTCTACGACA : 217358 83 : ysMetLysIleIleGlyProValSerHisTrpLeuMetGlyGluLeuAsnTyrCysCy : 101 ||:!!|||:!:.!!||||||:!!! ! !!! :!!|||!.! :!!!!.|||! !! ysLeuLysLeuPheGlyProLeuIlePheCysValMetAlaPheValLysTyrTyrSe 217359 : AGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTC : 217415 102 : sLeuLeuSerLysThrAspAspIleIleArgCysIleLysHisValGluArgAspTrp : 120 !|||:!! ! ! ! !! |||||| !..!|||:!:!:!...:!!|||||||||||| rLeuIleValHisLysAlaAspIleArgGluCysValArgArgIleGluArgAspTrp 217416 : TCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGG : 217472 121 : GlnValValGluAsnAlaSerSerArgGluMetMetLeuLysTyrAlaLysValGlyA : 140 ::! !|||..! !! !!.!..!|||||| !|||:!! ! !!|||!!. !!|||| ArgAsnValArgCysGluLysAspArgGluAlaMetIleValAsnAlaAsnPheGlyA 217473 : AGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCC : 217532 141 : rgPheIleAlaPheIleAlaAlaPheCysMetHisSerGlyValLeuAlaPheSerIl : 159 || :!:!.!.!.:!!..!.!!|||! !|||:!!|||||| ::: ::: || rgLysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIl 217533 : GTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcgttttttattacat : 217589 160 : eThrLysGlyPheLysLysMetMetPheLeuValGlyAsnAspSerTyrPheMetTyr : 178 |.!!! ! !.!!!.. ! !! .!!||| !! !|||! !:! ! !.!. ! eAlaIleProIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuThrPheIle 217590 : CGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTTATT : 217646 179 : ProLeuProCysProValTyrThrAsnLeuLeuAspAlaArgPheSerProAlaAsnG : 198 |||||| !! !||| !! ! ! !!:!!:!!|||.!!|||!:!!!!|||.!!|||| ProLeuValPheProPheThrLysTyrIleIleAspThrArgTyrThrProThrAsnG 217647 : CCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCTACGAACG : 217706 199 : luIleValPheValLeuGlnIleLeuSerGlyPheIleValThrSerValThrValGl : 217 ||||||||||| !!||||||:!::!!:!!||| !:!::!! !.!!:!!||| !!. luIleValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAl 217707 : AAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGC : 217763 218 : yAlaCysGlyLeuAlaAlaValLeuThrMetHisAlaSerGlyGlnLeuAsnMetVal : 236 !||||||.!!|||||||||!.!!!!.!!:!:||||||!!!||||||:!!.!.:!!:!! aAlaCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGluValLeu 217764 : TGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTG : 217820 237 : ValAlaArgLeuAspAsnLeuValAspThrLysValGlu : 249 :!! ! !!|||.!.:!!|||:!!||| !!:!!.!!!: MetAsnTrpLeuGlnHisLeuIleAspGlyArgAlaAsp 217821 : ATGAACTGGCTGCAACATTTAATCGACGGTAGAGCGGAT : 217861 vulgar: gi|350422520|ref|XP_003493189.1| 4 249 . KQ414889.1 217126 217861 + 424 M 245 735 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217127 217861 424 + . gene_id 10 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217127 217861 . + . KQ414889.1 exonerate:protein2genome:local exon 217127 217861 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217127 217861 424 + . alignment_id 10 ; Query gi|350422520|ref|XP_003493189.1| ; Align 217127 5 735 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 422 Query range: 19 -> 285 Target range: 236849 -> 237632 20 : GluTyrSerIleGlnValAsnArgTrpLeuMetGlnProIleGlyAlaTrpProLysL : 39 !!:||||||:!!||| !||||||||| !|||:!! !||||||.!!||||||:!!! AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnP 236850 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGT : 236907 40 : euThrLysThrAsnArgThrGlnArgLeuPheAlaLysLeuLeuAsnPheIleCysHi : 58 !! :!!:::!.! !:!!||| !.!!:!!::!:!!|||||| ! ||||||:! he------SerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTy 236908 : TC------TCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTA : 236958 59 : sSerLeuIleIlePheThrIleValProCysIleLeuHisIleValTyrGluAlaGlu : 77 !!!! !|||:!!|||:!!|||:!!|||||| ||||||:!!:!! ||| !! ! rThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGly 236959 : CACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGG : 237015 78 : SerSerArgMetLysMetLysIleIleGlyProValSerHisTrpLeuMetGlyGluL : 97 !!!! ! !! !|||:!!||||||:!!||| !!:!!|||||||||:!!.!. !! : ThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleI 237016 : ACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCA : 237075 98 : euAsnTyrCysCysLeuLeuSerLysThrAspAspIleIleArgCysIleLysHisVa : 116 !!!:!||| ! |||||| !::! ! ! !||| !!.!! !.!!!!.|||:! leSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMe 237076 : TCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATAT : 237132 117 : lGluArgAspTrpGlnValValGluAsnAlaSerSerArgGluMetMetLeuLysTyr : 135 !|||! !||||||::!..!..! ... ......:::|||:::|||||||||||| tGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyr 237133 : GGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTAC : 237189 136 : AlaLysValGlyArgPheIleAlaPheIleAlaAlaPheCysMetHisSerGlyValL : 155 |||||| !!.!!|||!:! |||.!! !..!.!!.!!! !!!:|||.!!|||:!!| AlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleL 237190 : GCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATAC : 237249 156 : euAlaPheSerIleThrLysGlyPheLysLysMetMetPheLeuValGlyAsnAspSe : 174 ||!.!!:!!!!:!!! !! !!.!! !! ! !|||:!: !!:!!||||||||| ! !! euGlyTyrCysValMetThrAlaSerThrThrMetValValValValGlyAsnLysTh 237250 : TTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGAC : 237306 175 : rTyrPheMetTyrProLeuProCysProValTyrThrAsnLeuLeuAspAlaArgPhe : 193 ! .!!:!! ! !||||||! |||:!!|||! !...|||||| !.! ! rThrIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThr 237307 : TACGATCTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACG : 237363 194 : SerProAlaAsnGluIleValPheValLeuGlnIleLeuSerGlyPheIleValThrS : 213 !:! !! !|||!!:|||||| !!:!!! !|||.!!|||||||||||||||!.!!.!! AsnThrMetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnA 237364 : AATACTATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACA : 237423 214 : erValThrValGlyAlaCysGlyLeuAlaAlaValLeuThrMetHisAlaSerGlyGl : 232 :! !.!!:!!.!!!.! .!!|||.!!::!!.!|||||| |||||||||||||| snSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGl 237424 : ACAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCA : 237480 233 : nLeuAsnMetValValAlaArgLeuAspAsnLeuValAspThrLysValGluGluLys : 251 ||||!:!:!!|||:!! ! !:!!!!::!!!!!|||..! |||! !!:! nLeuSerValValMetLeuSerIleGluAspPheValSer---------GluAlaArg 237481 : GTTGAGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGT---------GAAGCGAGA : 237528 252 : GlnGluAlaGlnThrValAlaGlnArgLysLeuGlyIleIleValGluHisHisLeuA : 271 !::..!!.!:!! !! ! ! !:!!:!! !! !|||||||||.!.||||||| ArgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluGluHisLeuA 237529 : CGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGA : 237588 272 : rgThrLeuSerLeuIleAlaSerIleGluLysValMetAsnMet : 285 ||..!|||!.!! !:!!..!! !:!:!!: !:!!:!! ||| rgValLeuLys***ValCysLeuLeuAspLeuIleLeuLeuMet 237589 : GAGTGTTGAAGTAAGTATGTTTGTTGGATTTGATTTTGCTGATG : 237632 vulgar: gi|350422520|ref|XP_003493189.1| 19 285 . KQ414889.1 236849 237632 + 422 M 20 60 G 2 0 M 204 612 G 3 0 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236850 237632 422 + . gene_id 11 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236850 237632 . + . KQ414889.1 exonerate:protein2genome:local exon 236850 237632 . + . insertions 0 ; deletions 5 KQ414889.1 exonerate:protein2genome:local similarity 236850 237632 422 + . alignment_id 11 ; Query gi|350422520|ref|XP_003493189.1| ; Align 236850 20 60 ; Align 236910 42 612 ; Align 237522 249 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 408 Query range: 14 -> 249 Target range: 221360 -> 222065 15 : TyrAlaHisAspTyrGluTyrSerIleGlnValAsnArgTrpLeuMetGlnProIleG : 34 ||| ! :!! :!!! |||:!:|||:!!!:!||||||:!!:!!:!!||||||| TyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleG 221361 : TACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCG : 221418 35 : lyAlaTrpProLysLeuThrLysThrAsnArgThrGlnArgLeuPheAlaLysLeuLe : 53 ||!.!||||||!!.! !.!!!!.! !::!! !..!:!!|||! !.!! ! !|||:! lyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLeuIl 221419 : GTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCTGAT : 221475 54 : uAsnPheIleCysHisSerLeuIleIlePheThrIleValProCysIleLeuHisIle : 72 !||| !!:!!|||:!!|||||||||! ||| !:!:|||||||||! !|||:!!:!: eAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyrVal 221476 : AAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTG : 221532 73 : ValTyrGluAlaGluSerSerArgMetLysMetLysIleIleGlyProValSerHisT : 92 :!! !|||!.!|||..! ! !! !:!!!:|||:!::!:||||||:!!||| !! IleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheC 221533 : ATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCT : 221592 93 : rpLeuMetGlyGluLeuAsnTyrCysCysLeuLeuSerLysThrAspAspIleIleAr : 111 ! :!!|||!.! |||!!.||| ! |||:!! ! ! !:!!|||||| !.. ysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGl 221593 : GCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGA : 221649 112 : gCysIleLysHisValGluArgAspTrpGlnValValGluAsnAlaSerSerArgGlu : 130 !||||||:!!!.!:!!||| !!||||||:!! !:!! !!:!!!.!..!!:!!!: uCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLysAsp 221650 : GTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAGGAT : 221706 131 : MetMetLeuLysTyrAlaLysValGlyArgPheIleAlaPheIleAlaAlaPheCysM : 150 !!:|||:!!:!! !!|||! !!|||||| :!: !.!.|||..!.!!|||! !| IleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheM 221707 : ATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCA : 221766 151 : etHisSerGlyValLeuAlaPheSerIleThrLysGlyPheLysLysMetMetPheLe : 169 ||:!!|||||| ::: ::: |||.!!! ! !|||!.. ! ! .!!! etTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIlePr 221767 : TGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCC : 221823 170 : uValGlyAsnAspSerTyrPheMetTyrProLeuProCysProValTyrThrAsnLeu : 188 !!.! !:!! ::: ... |||:!! !! !||| !!! ! ! !:!! oAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPheIle 221824 : TGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATC : 221880 189 : LeuAspAlaArgPheSerProAlaAsnGluIleValPheValLeuGlnIleLeuSerG : 208 :!!|||.!!|||!:!||||||!.!|||||||||:!!||| !|||||||||:!!:!!| ValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaG 221881 : GTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGG : 221940 209 : lyPheIleValThrSerValThrValGlyAlaCysGlyLeuAlaAlaValLeuThrMe : 227 || !:!::!! !|||:!!||| !!.!||||||.!!|||!.!|||:!!!!!.!!:! lyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaVa 221941 : GTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGT : 221997 228 : tHisAlaSerGlyGlnLeuAsnMetValValAlaArgLeuAspAsnLeuValAspThr : 246 !||||||!!!||||||:!!.!.:!!:!!:!!::! !!||| ! :!!|||:!!:!! ! lHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsnGly 221998 : GCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGC : 222054 247 : LysValGlu : 249 ::!!.!!!: ArgAlaAsp 222055 : CGGGCGGAT : 222065 vulgar: gi|350422520|ref|XP_003493189.1| 14 249 . KQ414889.1 221360 222065 + 408 M 235 705 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221361 222065 408 + . gene_id 12 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221361 222065 . + . KQ414889.1 exonerate:protein2genome:local exon 221361 222065 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221361 222065 408 + . alignment_id 12 ; Query gi|350422520|ref|XP_003493189.1| ; Align 221361 15 705 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 400 Query range: 14 -> 249 Target range: 226912 -> 227617 15 : TyrAlaHisAspTyrGluTyrSerIleGlnValAsnArgTrpLeuMetGlnProIleG : 34 ||| !.!. !!! .!. |||||||||:!!||||||||||||:!!:!!|||:!!| TyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuG 226913 : TATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCG : 226970 35 : lyAlaTrpProLysLeuThrLysThrAsnArgThrGlnArgLeuPheAlaLysLeuLe : 53 || !||||||..!! ! !|||!:!::!|||! ! !|||! !|||:!! !|||:! lyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMe 226971 : GTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGAT : 227027 54 : uAsnPheIleCysHisSerLeuIleIlePheThrIleValProCysIleLeuHisIle : 72 !..!|||:!!|||:!!:!!|||!!:! !||| !:!:||| !! !! !|||:!!:!: tGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrVal 227028 : GGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTG : 227084 73 : ValTyrGluAlaGluSerSerArgMetLysMetLysIleIleGlyProValSerHisT : 92 ||| |||!.!:!!.!!:!! !! ! !:!!|||!!:|||||||||:!!||| !! ValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPheP 227085 : GTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCT : 227144 93 : rpLeuMetGlyGluLeuAsnTyrCysCysLeuLeuSerLysThrAspAspIleIleAr : 111 :: !|||..! |||!!.|||! ! ||| !! ! ! !|||||||||:!!.. heAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGl 227145 : TCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGA : 227201 112 : gCysIleLysHisValGluArgAspTrpGlnValValGluAsnAlaSerSerArgGlu : 130 !|||:!!:!!!..:!!:!! !!||||||:!! !:!!..! !! !..!..!|||.!. uCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsn 227202 : GTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAAC : 227258 131 : MetMetLeuLysTyrAlaLysValGlyArgPheIleAlaPheIleAlaAlaPheCysM : 150 :!!|||:!!! !|||||| ! !|||||| :!: ! !|||..!.!!|||! !: ValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheV 227259 : GTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCG : 227318 151 : etHisSerGlyValLeuAlaPheSerIleThrLysGlyPheLysLysMetMetPheLe : 169 !: !|||... ::: ||| |||..! ! !.!!!!. ! !! alPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerValAl 227319 : TCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGC : 227375 170 : uValGlyAsnAspSerTyrPheMetTyrProLeuProCysProValTyrThrAsnLeu : 188 !..!! !:!!! !:!:!! ! !! !:!!|||! !||| !! ! !! !:!! aThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIleIle 227376 : AACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATC : 227432 189 : LeuAspAlaArgPheSerProAlaAsnGluIleValPheValLeuGlnIleLeuSerG : 208 !|||!.!|||!:!|||||| !||||||||| !!||| !:!!|||.!!:!!!!!| AlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValThrG 227433 : GCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAG : 227492 209 : lyPheIleValThrSerValThrValGlyAlaCysGlyLeuAlaAlaValLeuThrMe : 227 ||.!!:!::!! !.!!|||||| !!.!||||||.!!:!!||||||:!!|||.!!:! lyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaVa 227493 : GTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGT : 227549 228 : tHisAlaSerGlyGlnLeuAsnMetValValAlaArgLeuAspAsnLeuValAspThr : 246 :||||||!!!||||||:!!.!.:!!:!!|||:!! !!|||! :!!|||:!!||| ! lHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGly 227550 : TCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGC : 227606 247 : LysValGlu : 249 !:!!.!!!: ArgAlaAsp 227607 : AGAGCGGAT : 227617 vulgar: gi|350422520|ref|XP_003493189.1| 14 249 . KQ414889.1 226912 227617 + 400 M 235 705 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226913 227617 400 + . gene_id 13 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226913 227617 . + . KQ414889.1 exonerate:protein2genome:local exon 226913 227617 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226913 227617 400 + . alignment_id 13 ; Query gi|350422520|ref|XP_003493189.1| ; Align 226913 15 705 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 382 Query range: 9 -> 307 Target range: 212839 -> 214561 10 : IleSerAsnAlaPheTyrAlaHisAspTyrGluTyrSerIleGlnValAsnArgTrpL : 29 :!!..!:!!..! !|||! ! ! ... |||||| ! !|||||||||| ValGluAspCysThrTyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpL 212840 : GTCGAAGACTGTACCTACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGC : 212897 30 : euMetGlnProIleGlyAlaTrpProLysLeuThrLysThrAsnArgThrGlnArgLe : 48 ||:!!:!!|||! ||| !|||||| ! !:!! ! ..!:::! !! !:!!!:! euLeuLysProThrGlyLeuTrpProAspLysSerTyrValSerProIleGluLysAs 212898 : TTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAA : 212954 49 : uPheAlaLysLeuLeuAsnPheIleCysHisSerLeuIleIlePheThrIleValPro : 67 !.!!|||::!|||:!!||| !:!!|||:!!.!!|||||| !!:! !:!!:!!||| nIleAlaArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIlePro 212955 : CATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCG : 213011 68 : CysIleLeuHisIleValTyrGluAlaGluSerSerArgMetLysMetLysIleIleG : 87 |||! !|||:!!:!: !! !!!:!.!|||::: ::::!::!!:!:.!!| CysSerLeuTyrValPheLeuAspValGluAsnIlePheLysGluIleGluLeuPheG 213012 : TGCAGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCG : 213071 88 : lyProValSerHisTrpLeuMetGlyGluLeuAsnTyrCysCysLeuLeuSerLysTh : 106 || ! !!:!! !!! :!! !.! !! !!!.||| !! |||:!! ! ! lyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGl 213072 : GCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGG : 213128 107 : rAspAspIleIleArgCysIleLysHisValGluArgAspTrpGlnValValGluAsn : 125 !||||||||| !! !|||:!!:!!|||:!!:!! !||||||:!! !:!! !:!! yAspAspIleArgThrCysValGluHisMetLysTyrAspTrpLysAsnIleThrHis 213129 : TGACGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCAC : 213185 126 : AlaSerSerArgGluMetMetLeuLysTyrAlaLysValGlyArgPheIleAlaPheI : 145 ! !..!..!!:!|||!!:||| ! ! !!|||!.. !!|||!:! |||!.! | GluGluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrI 213186 : GAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAA : 213245 146 : leAlaAlaPheCysMetHisSerGlyValLeuAlaPheSerIleThrLysGlyPheLy : 164 ||..!||||||! !|||:!!!!!||| !! ! !!:!! !:!!..! ! !.!!!. leCysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuValValProIleSe 213246 : TTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAG : 213302 165 : sLysMetMetPheLeuValGlyAsnAspSerTyrPheMetTyrProLeuProCysPro : 183 . ! ! .!.:!!!.!! !:!! !!:! .!. ! !:!! ! !||| rAlaAspLysMetValAlaGluAspLeuAsnValThrPheArgGlnMetValValPro 213303 : CGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCT : 213359 184 : ValTyrThrAsnLeuLeuAspAlaArgPheSerProAlaAsnGluIleValPheValL : 203 |||! ! ! !:!!:!!|||!.!|||!:!||||||!.!||||||||| !!|||:!!: ValSerArgPheIleValAspValArgTyrSerProValAsnGluIlePhePheLeuI 213360 : GTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGA : 213419 204 : euGlnIleLeuSerGlyPheIleValThrSerValThrValGlyAlaCysGlyLeuAl : 222 !!||||||:!!:!!||| ! :!::!! !:!!:!!.!!|||! !||||||.!!||||| leGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAl 213420 : TTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGC : 213476 223 : aAlaValLeuThrMetHisAlaSerGlyGlnLeuAsnMetValValAlaArgLeuAsp : 241 |||||||!!!.!!:!:||||||!!!||||||:!!..!!!::!!:!!::! !!|||!!: aAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGlu 213477 : AGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAA : 213533 242 : AsnLeuValAspThrLysValGluGluLysGlnGluAlaGlnThrValAlaGlnArgL : 261 :!!|||:!!||| !!:!! !!!: !!..:!!.!.!.!.!. ! ! HisLeuIleAspGlyArgGluAspMetSerLysAsnValAspAsp------------A 213534 : CATTTGATAGACGGTAGAGAGGATATGAGCAAGAATGTGGACGAC------------A : 213581 262 : ysLeuGlyIleIleValGluHisHisLeuArgThrLeuSerLeuIleAla >>>> T : 278 :!:!!!.!:!!||||||.!.!!.|||:!!|||! !|||!.!! !:!:! ! rgIleAlaValIleValAsnGlnHisValArgIleLeuLysTrpValGlu-+ 213582 : GAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTGAAGTGGGTGGAAtt...... : 213634 279 : arget Intron 1 >>>> SerIleGluLysValMetAsnMetIleCysLeuValG : 290 840 bp !:!:||||||!.!:!:......:!!! !!!!!.!| ++LeuValGluLysAlaLeuArgGlnValSerPheAlaG 213635 : ...................agCTCGTGGAGAAAGCACTTCGGCAAGTATCTTTCGCTG : 214508 291 : luLeuValGlyCysThrIleAsnMetCysIleIleLysTyrSerPheLeuThr : 307 |||||:!!! !||||||:!:|||:!:|||:!!:!! !|||! !.!.:!!||| luLeuLeuValCysThrValAsnLeuCysLeuValGlyTyrTyrIleIleThr 214509 : AATTATTAGTATGCACGGTGAATCTCTGTCTCGTTGGATATTACATAATAACG : 214561 vulgar: gi|350422520|ref|XP_003493189.1| 9 307 . KQ414889.1 212839 214561 + 382 M 247 741 G 4 0 M 17 51 5 0 2 I 0 836 3 0 2 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212840 214561 382 + . gene_id 14 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212840 213631 . + . KQ414889.1 exonerate:protein2genome:local exon 212840 213631 . + . insertions 0 ; deletions 4 KQ414889.1 exonerate:protein2genome:local splice5 213632 213633 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 213632 214471 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214470 214471 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214472 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214472 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212840 214561 382 + . alignment_id 14 ; Query gi|350422520|ref|XP_003493189.1| ; Align 212840 10 741 ; Align 213581 261 51 ; Align 214472 278 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 301 Query range: 11 -> 247 Target range: 303169 -> 304806 12 : AsnAlaPheTyrAlaHisAspTyrGluTyrSerIleGlnValAsnArgTrpLeuMetG : 31 ||| ! !||| ! ! ||| !! ||| !! !:!! !!:!!:!|||:!!:!!: AsnLeuAsnTyrLysLysAspIleValTyrValThrLysHisSerLysTrpIleLeuL 303170 : AATTTGAATTACAAGAAAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCCTGA : 303227 32 : lnProIleGlyAlaTrpProLysLeuThrLysThrAsnArgThrGlnArgLeuPheAl : 50 !! !!:!!||| !|||||| :!! !:!!..!||| ! !!!!!.!. ! ysSerLeuGlyIleTrpProAlaVal------LeuAspGluThrAlaGlyPheLeuPr 303228 : AGTCCCTTGGTATTTGGCCAGCCGTG------TTGGACGAAACCGCAGGATTCCTACC : 303278 51 : aLysLeuLeuAsnPheIleCysHisSerLeuIleIlePheThrIleValProCysIle : 69 !|||:!! !! ! :!! !!:!!! !:!!:!!:!!||||||:!::!!||||||||| oLysIleThrIleGlyLeuSerAsnLeuValLeuLeuPheThrValIleProCysIle 303279 : AAAAATCACCATTGGACTCAGTAATTTGGTTCTATTATTCACCGTGATACCGTGTATT : 303335 70 : LeuHisIleValTyrGluAlaGluSerSerArgMetLysMetLysIleIleGlyProV : 89 |||||||||:!!!:!||| !:!!..!!!!! !!!:!:!:!!|||:!!.!!|||! !: LeuHisIleIlePheGluGlnLysAspThrIleIleArgLeuLysLeuPheGlyLeuL 303336 : CTACACATAATATTCGAACAAAAGGATACGATAATAAGATTGAAACTATTCGGTCTGC : 303395 90 : alSerHisTrpLeuMetGlyGlu{Le} >>>> Target Intron 1 >>>> {u : 97 !!||| !!! |||!!:..! !{:!} 938 bp {! euSerPheCysLeuIleSerLeu{Il}+- -+{e 303396 : TGAGTTTCTGTTTGATCTCGTTG{AT}ga.........................cg{A : 304359 98 : }AsnTyrCysCysLeuLeuSerLysThrAspAspIleIleArgCysIleLysHisVal : 116 }.!.|||! ! ||| ||| ::::!: ! ! ! ! !!:!! }GlnTyrSerIleLeuProCysLysLeuLysArgLeuValPheArg***GlyAspLeu 304360 : }CAATATTCTATACTTccttgcaaattaaaacgtttaGTGTTTCGATAAGGGGATCTC : 304414 117 : GluArgAspTrpGlnValValGluAsnAlaSerSerArgGluMetMetLeuLysTyrA : 136 ...! !! !:::!! !||||||::! !!!!..!|||||||||||||||||||||! SerThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysTyrG 304415 : TCTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACG : 304474 137 : laLysValGlyArgPheIleAlaPheIleAlaAlaPheCysMetHisSerGlyValLe : 155 .!:!!:!!|||||| !:!:.!!.!.|||..!|||.!.! !|||:!!!!!|||! ! lyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyTh 304475 : GGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCAC : 304531 156 : uAlaPheSerIleThrLysGlyPheLysLysMetMetPheLeuValGlyAsnAspSer : 174 ! !!:! !! ..!! ! !||| !! ! !!:! |||! !.!. !!!:! rIleTyrHisThrValMetGlnPheAlaThrGlyThrTyr---ValAspGluTyrAsn 304532 : CATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTAT---GTGGATGAGTATAAT : 304585 175 : TyrPheMetTyrProLeuProCysProValTyrThrAsnLeuLeuAspAlaArgPheS : 194 ! !!: ! |||||| !! !|||..!|||!:! !|||!!!|||!.!!:! | ArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrS 304586 : CGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAA : 304645 195 : erProAlaAsnGluIleValPheValLeuGlnIleLeuSerGlyPheIleValThrSe : 213 ||||| ! !!|||:!:|||!:! !!:!!!!. !:!!!!!|||!:!:!!:!! !|| erProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSe 304646 : GCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTC : 304702 214 : rValThrValGlyAlaCysGlyLeuAlaAlaValLeuThrMetHisAlaSerGlyGln : 232 |:!!|||!.!|||||||||||||||||||||:!!!!!.!!! ||||||!!!|||||| rIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGln 304703 : TATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAA : 304759 233 : LeuAsnMetValValAlaArgLeuAspAsnLeuValAspThrLys : 247 :!!:!!!!:|||:!!:!!||||||! !:!!||||||:!!!:!||| IleAspIleValMetSerArgLeuGlyAspLeuValAsnSerLys 304760 : ATTGATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAA : 304806 vulgar: gi|350422520|ref|XP_003493189.1| 11 247 . KQ414889.1 303169 304806 + 301 M 28 84 G 2 0 M 55 165 S 0 2 5 0 2 I 0 934 3 0 2 S 1 1 M 71 213 G 1 0 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303170 304806 301 + . gene_id 15 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303170 303420 . + . KQ414889.1 exonerate:protein2genome:local exon 303170 303420 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 303421 303422 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 303421 304358 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304357 304358 . + . intron_id 0 ; splice_site "CG" KQ414889.1 exonerate:protein2genome:local cds 304359 304806 . + . KQ414889.1 exonerate:protein2genome:local exon 304359 304806 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 303170 304806 301 + . alignment_id 15 ; Query gi|350422520|ref|XP_003493189.1| ; Align 303170 12 84 ; Align 303254 42 165 ; Align 304360 98 213 ; Align 304573 170 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 299 Query range: 16 -> 245 Target range: 204224 -> 204905 17 : HisAspTyrGluTyrSerIleGlnValAsnArgTrpLeuMetGlnProIleGlyAlaT : 36 .!.||| ..!|||:!!! !!:: !! !:! !:!!:!: ! !:!!||||||| GluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaT 204225 : GAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGT : 204282 37 : rpProLysLeuThrLysThrAsnArgThrGlnArgLeuPheAlaLysLeuLeuAsnPh : 55 |||||! ! !..!!!.:!!::!! ! ! !|||||| ! !::!:!! !:!! ! rpProIleProValAsnSerSerProPheThrArgLeuValArgArgIleGluHisVa 204283 : GGCCGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGT : 204339 56 : eIleCysHisSerLeuIleIlePheThrIleValProCysIleLeuHisIleValTyr : 74 :!! !::: |||......... !||||||||| !!:!!|||:!!:!: !! lValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheLeu 204340 : AGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTG : 204396 75 : GluAlaGluSerSerArgMetLysMetLysIleIleGlyProValSerHisTrpLeuM : 94 :!!! !:!!!:!.!!!:!!!:::::!!||||||:!!||||||:!! !:!!!! !! LysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSerI 204397 : AAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCA : 204456 95 : etGlyGluLeuAsnTyrCysCysLeuLeuSerLysThrAspAspIleIleArgCysIl : 113 !: ! !!!!!.|||! ! !:!!|||! !::!! !||| ! ||| !:! !!:! leGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSerLe 204457 : TACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGTTT : 204513 114 : eLysHisValGluArgAspTrpGlnValValGluAsnAlaSerSerArgGluMetMet : 132 :!!. !:!!..!||||||||| :!!! !! !..! !..!!:!||| !!!:.!. uAsnThrIleArgArgAspTrp---IleGluAlaThrAspGluAsnArgLeuIlePhe 204514 : GAACACCATCAGACGCGACTGG---ATAGAGGCTACGGATGAAAATCGGTTGATTTTC : 204567 133 : LeuLysTyrAlaLysValGlyArgPheIleAlaPheIleAlaAlaPheCysMetHisS : 152 ! !..! ! ||||||:!!|||||| :!: !.!.||||||||| ! !|||:!!. ArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetTyrG 204568 : CGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGTACG : 204627 153 : erGlyValLeuAlaPheSerIleThrLysGlyPheLysLysMetMetPheLeuValGl : 171 !!|||! !|||..!!:!!!!! ! ! !!!. !!:! ! ! :!!||| lyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThr---IleValTh 204628 : GCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACG---ATCGTAAC : 204681 172 : yAsnAspSerTyrPheMetTyrProLeuProCysProValTyrThrAsnLeuLeuAsp : 190 ! !|||!:! ! !!!: ||||||||||||||||||||| ......::: rProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePheAsn 204682 : ACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaac : 204738 191 : AlaArgPheSerProAlaAsnGluIleValPheValLeuGlnIleLeuSerGlyPheI : 210 ! !!:! !|||||| ! !!||||||||||||:!!|||||||||:!!:!!||||||: GluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheV 204739 : GAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTG : 204798 211 : leValThrSerValThrValGlyAlaCysGlyLeuAlaAlaValLeuThrMetHisAl : 229 !!..! !:!!|||! ! !|||.!!||||||:!!..!|||:!!!!!..!:!:||||| alThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAl 204799 : TTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGC : 204855 230 : aSerGlyGlnLeuAsnMetValValAlaArgLeuAspAsnLeuValAsp : 245 |!!!.!!..!|||!..!!::!!||| !!:!:!!:!! ||||||||| aCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAsp 204856 : GTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGAT : 204905 vulgar: gi|350422520|ref|XP_003493189.1| 16 245 . KQ414889.1 204224 204905 + 299 M 104 312 G 1 0 M 46 138 G 1 0 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204225 204905 299 + . gene_id 16 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204225 204905 . + . KQ414889.1 exonerate:protein2genome:local exon 204225 204905 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 204225 204905 299 + . alignment_id 16 ; Query gi|350422520|ref|XP_003493189.1| ; Align 204225 17 312 ; Align 204537 122 138 ; Align 204675 169 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 298 Query range: 10 -> 243 Target range: 289705 -> 290401 11 : SerAsnAlaPheTyrAlaHisAspTyrGluTyrSerIleGlnValAsnArgTrpLeuM : 30 ||||||! ! !|||! ! ||| ...|||!!!.!!:!!:!! !!.!|||:!!: SerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleL 289706 : TCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCT : 289763 31 : etGlnProIleGlyAlaTrpPro<->LysLeuThrLysThrAsnArgThrGlnArgLe : 48 !!:!!||||||||| !!::||| !!!!:!:::.!!!:!||| !:!!||| euLysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgTh 289764 : TGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAAC : 289820 49 : uPheAlaLysLeuLeuAsnPheIleCysHisSerLeuIleIlePheThrIleValPro : 67 ! :!! !||||||! !.!.:!!||| !|||:!!:!! |||! !||||||||| rAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValPro 289821 : GGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCG : 289877 68 : CysIleLeuHisIleValTyrGluAlaGluSerSerArgMetLysMetLysIleIleG : 87 ! !! !! !|||:!!:!!!:!...! !.!...!! !!.!! ! :!:|||! !:!!| PheSerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuG 289878 : TTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCG : 289937 88 : lyProValSerHisTrpLeuMetGlyGluLeuAsnTyrCysCysLeuLeuSerLysTh : 106 |||||:!!!!! !!! |||! ! !!!!!.||||||! !!!! !! !||| lyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGl 289938 : GACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGG : 289994 107 : rAspAspIleIleArgCysIleLysHisValGluArgAspTrpGlnValValGluAsn : 125 !...! ||| !||||||:!:||||||:!!||||||||||||:!!:!!:!!...:!! ySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAsp 289995 : TTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGAC : 290051 126 : AlaSerSerArgGluMetMetLeuLysTyrAlaLysValGlyArgPheIleAlaPheI : 145 ! !..! !|||! !!:||||||!:!|||!.!! !:!!.!!||| !:!! ! : GluAspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysL 290052 : GAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAAC : 290111 146 : leAlaAlaPheCysMetHisSerGlyValLeuAlaPheSerIleThrLysGlyPheLy : 164 !:..!|||.!!! !:!!:!!! !|||! !|||:!!!:!!:!! !..!! ! !!!. euCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPh 290112 : TGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTT : 290168 165 : sLysMetMetPheLeuValGlyAsnAspSerTyrPheMetTyrProLeuProCysPro : 183 ..!! !! ! !:!! !||||||! !!! !!: |||||| !!! !||| eSerLysLysSerValAsnGlyAsnValThr------IleArgProLeuThrTyrPro 290169 : CTCGAAGAAGAGCGTGAACGGTAACGTGACT------ATCAGACCTCTAACTTATCCC : 290219 184 : ValTyrThrAsnLeuLeuAspAlaArgPheSerProAlaAsnGluIleValPheValL : 203 ! !||| !.!.!!!!!!|||!.!!:! ||||||||| !!|||||||||||| !: GlyTyrGluGluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysM 290220 : GGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTA : 290279 204 : euGlnIleLeuSerGlyPheIleValThrSerValThrValGlyAlaCysGlyLeuAl : 222 !!!!. !:!!! !! !.!.|||..!.!!!:!:!!|||:!!!.!|||! !.!!|||.! etHisCysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuTh 290280 : TGCACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGAC : 290336 223 : aAlaValLeuThrMetHisAlaSerGlyGlnLeuAsnMetValValAlaArgLeuAsp : 241 !.!!:!!!!!.!!! |||.!!!!!||||||:!!!!.!!: !..!.!!||||||!!: rThrIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGlu 290337 : GACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAG : 290393 242 : AsnLeu : 243 :!!||| AspLeu 290394 : GATCTG : 290401 vulgar: gi|350422520|ref|XP_003493189.1| 10 243 . KQ414889.1 289705 290401 + 298 M 27 81 G 0 3 M 137 411 G 2 0 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289706 290401 298 + . gene_id 17 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289706 290401 . + . KQ414889.1 exonerate:protein2genome:local exon 289706 290401 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289706 290401 298 + . alignment_id 17 ; Query gi|350422520|ref|XP_003493189.1| ; Align 289706 11 81 ; Align 289790 38 411 ; Align 290201 177 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 265 Query range: 273 -> 406 Target range: 263671 -> 265001 274 : SerLeuIleAlaSerIleGluLysValMetAsnMetIleCysLeuValGluLeuValG : 293 |||!!!|||! ! !!|||:!!!!.||||||!:!! !||||||!!!||||||||| !! SerPheIleAspArgIleLysAsnValMetSerThrIleCysPheValGluLeuPheL 263672 : AGTTTCATAGATCGTATTAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCA : 263729 294 : lyCysThrIleAsnMetCysIleIleLysTyrSerPheLeuThr >>>> Target : 308 !..!|||:!::!!!!:|||!!::!! |||! !.!.|||||| 76 ysAlaThrLeuAspIleCysMetLeuGlyTyrTyrIleLeuThr++ 263730 : AGGCTACGCTGGATATATGCATGCTAGGTTACTACATACTTACGgt............ : 263776 309 : Intron 1 >>>> Glu<->LysSerLysAspMetArg<-><->IleValTyrAlaI : 319 4 bp ||| :!!||| ! |||:::::: !..!||| !! ++GluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheM 263777 : .............agGAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCA : 264580 320 : leValTyrAlaSerMetValPheAsnIlePheIlePheCysTyrIleGlyGluIleVa : 338 !::!! !|||||| ! !|||||||||:!!.!.||||||||||||||||||:! etIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLe 264581 : TGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATT : 264637 339 : lIleGluGln >>>> Target Intron 2 >>>> GlyGluArgValGlyLysL : 348 !! !|||||| 78 bp !!:!!!:!||||||:!! uThrGluGln++ ++CysLysLysValGlyGluV 264638 : GACTGAGcaggt.........................agTGTAAGAAAGTTGGTGAGG : 264745 349 : ysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValLe : 367 !|||||||||:!!.!.|||||| !||||||:!!||| ! !|||! !|||:!!|| alValTyrMetSerAsnTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLe 264746 : TGGTTTACATGTCGAATTGGTATTACTTACCCTACAAAGATATCCTTGATCTGATTCT : 264802 368 : uValIleSerArgSerSerMetValValLysIleThrAlaGlyLysPheIleGlnIle : 386 |:!!|||! !|||||||||:!!||| !!|||.!!||||||||||||.!.:!!!!.!!: uIleIleLeuArgSerSerValValPheLysPheThrAlaGlyLysIleLeuHisMet 264803 : CATCATTTTAAGATCCAGCGTGGTGTTTAAATTCACCGCTGGAAAGATACTTCACATG : 264859 387 : SerIleThrThrPheGlyVal >>>> Target Intron 3 >>>> ValPheLy : 396 |||!!: !||||||.!!! ! 80 bp |||.!!|| SerMetTyrThrPheSerAsp++ ++ValIleLy 264860 : TCCATGTACACATTCAGTGACgt.........................aggTAATCAA : 264969 397 : sThrSerPheAlaTyrLeuAsnMetIleArg : 406 |:!!||||||.!!|||||||||:!::!!||| sSerSerPheThrTyrLeuAsnLeuLeuArg 264970 : ATCCTCTTTCACGTACTTAAACTTACTTCGC : 265001 vulgar: gi|350422520|ref|XP_003493189.1| 273 406 . KQ414889.1 263671 265001 + 265 M 34 102 5 0 2 I 0 760 3 0 2 M 1 3 G 0 3 M 6 18 G 0 6 M 27 81 5 0 2 I 0 74 3 0 2 M 52 156 5 0 2 I 0 76 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 263672 265001 265 + . gene_id 18 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 263672 263773 . + . KQ414889.1 exonerate:protein2genome:local exon 263672 263773 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263774 263775 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263774 264537 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264536 264537 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264538 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264648 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264726 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265001 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265001 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 263672 265001 265 + . alignment_id 18 ; Query gi|350422520|ref|XP_003493189.1| ; Align 263672 274 102 ; Align 264538 308 3 ; Align 264544 309 18 ; Align 264568 315 81 ; Align 264727 342 156 ; Align 264963 394 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 257 Query range: 315 -> 406 Target range: 277404 -> 277833 316 : ValTyrAlaIleValTyrAlaSerMetValPheAsnIlePheIlePheCysTyrIleG : 335 ..!:!! !!!::!! ! !|||||| |||||||||||| ! ! |||||||||| ThrHisPheMetIleLeuIleSerMetCysPheAsnIlePheThrValCysTyrIleG 277405 : ACGCATTTCATGATCCTTATATCCATgtgtttcaacatttttacAGTATGCTATATCG : 277462 336 : lyGluIleValIleGluGln >>>> Target Intron 1 >>>> GlyGluArg : 344 ||||||||:!!! !|||||| 72 bp !!:!!!:! lyGluIleLeuThrGluGln++ ++CysLysLys 277463 : GAGAAATACTAACTGAACAGgt.........................agTGTAAAAAA : 277561 345 : ValGlyLysLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuG : 364 ||||||:!! !||||||||||||.!.|||||| !|||||| !!||| ! !|||. ValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAspLysAspIleLeuA 277562 : GTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCGACAAAGATATTCTCA : 277621 365 : lyLeuValLeuValIleSerArgSerSerMetValValLysIleThrAlaGlyLysPh : 383 .!|||:!!|||:!!|||||||||||||||:::|||:::||||||||||||||||||.. snLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIleThrAlaGlyLysLe 277622 : ATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaattaccgctggaaaatt : 277678 384 : eIleGlnIleSerIleThrThrPheGlyVal >>>> Target Intron 2 >>>> : 394 .||||||:::|||:!: !|||||||||! ! 84 bp uIleGlnMetSerValTyrThrPheGlyAsp++ 277679 : aattcaaatgtCCGTGTACACGTTCGGCGATgt......................... : 277713 395 : ValPheLysThrSerPheAlaTyrLeuAsnMetIleArg : 406 |||.!.||||||!!!|||||||||||||||::::::||| ++ValIleLysThrThrPheAlaTyrLeuAsnIleLeuArg 277714 : agGTAATAAAAACCACTTTCgcgtatttaaatattctacgC : 277833 vulgar: gi|350422520|ref|XP_003493189.1| 315 406 . KQ414889.1 277404 277833 + 257 M 26 78 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277405 277833 257 + . gene_id 19 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277405 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277405 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277833 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277833 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277405 277833 257 + . alignment_id 19 ; Query gi|350422520|ref|XP_003493189.1| ; Align 277405 316 78 ; Align 277555 342 156 ; Align 277795 394 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 233 Query range: 16 -> 216 Target range: 294675 -> 295275 17 : HisAspTyrGluTyrSerIleGlnValAsnArgTrpLeuMetGlnProIleGlyAlaT : 36 :!!||| ! ! !!|||:!!:!! ! !||| !!|||:!!:!!||||||||| !| AsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuT 294676 : AACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTT : 294733 37 : rpProLysLeu<->ThrLysThrAsnArgThrGlnArgLeuPheAlaLysLeuLeuAs : 54 ||||| :!! !:! ! |||!:!!:! !.!.!:!:!!.!!:!!! !:!!|||! rpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIl 294734 : GGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGAT : 294790 55 : nPheIleCysHisSerLeuIleIlePheThrIleValProCysIleLeuHisIleVal : 73 ! ||| ! ! !:!!:!:|||..!:!!||||||||| !! ! ! !||| eAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCysVal 294791 : CGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTA : 294847 74 : TyrGluAlaGluSerSerArgMetLysMetLysIleIleGlyProValSerHisTrpL : 93 !:!.!.!..:::::: ::::::|||||||||:!!:!:||||||||| !:!!! : PheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerM 294848 : TTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTA : 294907 94 : euMetGlyGluLeuAsnTyrCysCysLeuLeuSerLysThrAspAspIleIleArgCy : 112 !!:!:..! !|||!..||| !!||||||:!!! !|||||| !! .!!! !.!|| etLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCy 294908 : TGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTG : 294964 113 : sIleLysHisValGluArgAspTrpGlnValValGluAsnAlaSerSerArgGluMet : 131 ||||:!! !!:!!|||!.!||||||:!!:!!:!!!!:||| !!..! !|||! !!!: sIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIle 294965 : CATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATC : 295021 132 : MetLeuLysTyrAlaLysValGlyArgPheIleAlaPheIleAlaAlaPheCysMetH : 151 |||:!!||| !!|||! !||| !!:! !!:.!! !! ! !.!!.!! !!:: MetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleIleT 295022 : ATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCT : 295081 152 : isSerGlyValLeuAlaPheSerIleThrLysGlyPheLysLysMetMetPheLeuVa : 170 !!|||..!!.!:!!:!!!:! ! !! ! ||| ... |||! yrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAla---LeuGl 295082 : ACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgct---TTGGA : 295135 171 : lGlyAsnAspSerTyrPheMetTyrProLeuProCysProValTyrThrAsnLeuLeu : 189 !..!!!. ! !:! !! !!: ! !!|||||| !|||! !||| ! !!!:!! uAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheVal 295136 : GAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTA : 295192 190 : AspAlaArgPheSerProAlaAsnGluIleValPheValLeuGlnIleLeuSerGlyP : 209 |||||| !! !||||||.!! !!||||||:!! ..!! !! .!!:!!! !..!| AspAlaTyrSerSerProThrTyrGluIleIleArgThrHisLeuPheValTyrSerP 295193 : GACGCTTATTCCAGTCCTACCTACGAGATCATAAGAACTCATCTCTTTGTTTACTCGT : 295252 210 : heIleValThrSerValThrVal : 216 ||.!!|||!.!!.!..! !||| hePheValAsnLysThrGlyVal 295253 : TCTTCGTCAACAAAACTGGTGTC : 295275 vulgar: gi|350422520|ref|XP_003493189.1| 16 216 . KQ414889.1 294675 295275 + 233 M 23 69 G 0 3 M 128 384 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294676 295275 233 + . gene_id 20 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294676 295275 . + . KQ414889.1 exonerate:protein2genome:local exon 294676 295275 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294676 295275 233 + . alignment_id 20 ; Query gi|350422520|ref|XP_003493189.1| ; Align 294676 17 69 ; Align 294748 40 384 ; Align 295132 169 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 219 Query range: 2 -> 243 Target range: 194117 -> 194831 3 : AspValSerSerGluProProIleSerAsnAlaPheTyrAlaHisAspTyrGluTyrS : 22 :::::::::...::: ! ! !!|||!.! !||| ! ||| !||||||: GluIleAlaLysLysSerAsnTyrArgAsnValAsnTyrLysLeuAspThrGluTyrA 194118 : gaaatcgcgaagaaatcgAATTACCGCAACGTCAATTACAAATTGGACACCGAGTACG : 194175 23 : erIleGlnValAsnArgTrpLeuMetGlnProIleGlyAlaTrpProLysLeuThrLy : 41 !!:!!!:!||| !:! !|||:!: !||||||||| !||||||!:! ! !.. laValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProArgGluAspSe 194176 : CTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAAGGGAGGATTC : 194232 42 : sThrAsnArgThrGlnArgLeuPheAlaLysLeuLeuAsnPheIleCysHisSerLeu : 60 . !..! !! ! ||||||||||||:!! !.! !:!: ! !:!!||| rLeuArgAspArgValArgLeuPheAlaGln------ThrGlyValValPheAlaLeu 194233 : TCTTCGCGACAGAGTCCGACTGTTCGCTCAA------ACTGGCGTGGTCTTCGCTTTG : 194283 61 : IleIlePheThrIleValProCysIleLeuHisIleValTyrGluAlaGluSerSerA : 80 !!: !||| !:!:|||||| !:!::!!:!!! ! !!:!!!:..!|||..! !! MetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCysGluAspLeuT 194284 : ATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAGGATCTGA : 194343 81 : rgMetLysMetLysIleIleGlyProValSerHisTrpLeuMetGlyGluLeuAsnTy : 99 !! ! ! ||||||:!!|||!.! !! ! ! ! ! |||:!!!.! :!!!!.!: hrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleIleLysPh 194344 : CGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCATCAAGTT : 194400 100 : rCysCysLeuLeuSerLysThrAspAspIleIleArgCysIleLysHisValGluArg : 118 !!! :!!:!! !!!.! ! ! !!:|||! ! !|||:!: !.!.:!!|||! ! eTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGluMetGluThr 194401 : CTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGATGGAGACG : 194457 119 : AspTrpGlnValValGluAsnAlaSerSerArgGluMetMetLeuLysTyrAlaLysV : 138 .!.!::::!! !|||||| !! !..!..!|||:!!:!!||| !!!.! !||||||: GlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsnCysAlaLysI 194458 : CAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGCGCGAAAA : 194517 139 : alGlyArgPheIleAlaPheIleAlaAlaPheCysMetHisSerGlyValLeuAlaPh : 157 !!|||||||||.!!.!! !:!: ! ! ! :!!.!!|||!.!||| !!!: leGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTy 194518 : TCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTTTGCCGTA : 194574 158 : eSerIleThrLysGlyPheLysLysMetMetPheLeuValGlyAsnAspSerTyrPhe : 176 ! !|||! ! ! !.!.! !..! !! ! :!!||| !.!.|||!:! ! ! rHisIleIleLeuProLeuMetSerGluArg---IleValLysGluAspAsnSerThr 194575 : CCACATTATTCTACCTCTGATGTCGGAGAGG---ATTGTCAAGGAGGATAACAGTACT : 194628 177 : MetTyrProLeuProCysProValTyrThrAsnLeuLeuAspAlaArgPheSerProA : 196 ..! |||||||||! ! ! ! !! ! !!!!!!!! !..! !|||||| GlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAspSerProI 194629 : CAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGACTCGCCGA : 194688 197 : laAsnGluIleValPheValLeuGlnIleLeuSerGlyPheIleValThrSerValTh : 215 ! !!||||||..!||||||! !|||||||||! !.!! !|||:!! !|||..!!. leTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuSerThrAs 194689 : TTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGTCGACGAA : 194745 216 : rValGlyAlaCysGlyLeuAlaAlaValLeuThrMetHisAlaSerGlyGlnLeuAsn : 234 ! !||| !! !.!!|||!.!|||..!:!!! !||||||..!!!!||| !!!!.!. nCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGlyLeuPheGlu 194746 : TTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTTGTTCGAA : 194802 235 : MetValValAlaArgLeuAspAsnLeu : 243 :!!..! ! !|||:!!!!:!.!:!! ValThrSerArgArgMetGluThrIle 194803 : GTGACCAGCAGAAGGATGGAGACTATT : 194831 vulgar: gi|350422520|ref|XP_003493189.1| 2 243 . KQ414889.1 194117 194831 + 219 M 49 147 G 2 0 M 114 342 G 1 0 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194118 194831 219 + . gene_id 21 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194118 194831 . + . KQ414889.1 exonerate:protein2genome:local exon 194118 194831 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 194118 194831 219 + . alignment_id 21 ; Query gi|350422520|ref|XP_003493189.1| ; Align 194118 3 147 ; Align 194265 54 342 ; Align 194607 169 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 206 Query range: 314 -> 394 Target range: 224353 -> 224658 315 : IleValTyrAlaIleValTyrAlaSerMetValPheAsnIlePheIlePheCysTyrI : 334 :!:..!||| !|||:!! ! !|||:::...||||||||||||||||||||||||| ValThrTyrPheIleLeuLeuMetSerLeuThrPheAsnIlePheIlePheCysTyrI 224354 : GTGACTTACTTCATACTACTCATGTCtcttactttcaatatttttatattttgttaca : 224411 335 : leGlyGluIleValIleGluGln >>>> Target Intron 1 >>>> GlyGlu : 343 ||||||||:!:||| !|||||| 65 bp ||| leGlyGluLeuValAlaGluGln++ ++CysGlu 224412 : tAGGAGAGCTGGTAGCTGAAcaggt.........................agtgtgaa : 224503 344 : ArgValGlyLysLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaL : 363 ::::::|||::! ! !||||||! !!!:|||||||||||| !! !!.! ! !| LysIleGlyGlnValSerTyrMetIleAspTrpTyrArgLeuThrGlyAsnLysLysL 224504 : aaaattggacaAGTGTCGTACATGATCGACTGGTATCGGTTGACTGGAAATAAGAAAC : 224563 364 : euGlyLeuValLeuValIleSerArgSerSerMetValValLysIleThrAlaGlyLy : 382 || !!! !:!!|||:!!|||:!!! !|||!:! !:!!|||:!:|||||||||!! euCysCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAs 224564 : TATGCTGCATTCTGATAATCGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGAAA : 224620 383 : sPheIleGlnIleSerIleThrThrPheGlyValVal : 394 ..!.:!!:!!:!:!!!:!!||||||||||||! !||| nMetValGluLeuCysLeuThrThrPheGlyAspVal 224621 : CATGGTCGAACTGTGTCTAACCACTTTCGGTGACGTA : 224658 vulgar: gi|350422520|ref|XP_003493189.1| 314 394 . KQ414889.1 224353 224658 + 206 M 27 81 5 0 2 I 0 61 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224354 224658 206 + . gene_id 22 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224354 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224354 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224354 224658 206 + . alignment_id 22 ; Query gi|350422520|ref|XP_003493189.1| ; Align 224354 315 81 ; Align 224500 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 206 Query range: 315 -> 405 Target range: 305133 -> 305816 316 : ValTyrAlaIleValTyrAlaSerMetValPheAsnIlePheIlePheCysTyrIleG : 335 ..!|||.!!:!::!! !|||:!:..!|||||||||||||||!!.|||||||||| ThrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleG 305134 : ACATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTG : 305191 336 : lyGluIleValIleGluGln >>>> Target Intron 1 >>>> GlyGluArg : 344 ||||||||:!!!!:|||:!! 413 bp .!!...!!! lyGluIleLeuMetGluLys++ ++SerSerSer 305192 : GTGAGATTCTTATGGAAAAGgt.........................agAGCAGTAGC : 305631 345 : ValGlyLysLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuG : 364 |||||| !... !!:!|||! !...||||||!.!|||||| !|||||| !! !| ValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisG 305632 : GTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATG : 305691 365 : lyLeuValLeuValIleSerArgSerSerMetValValLysIleThrAlaGlyLysPh : 383 |||||:!!|||:!!|||:!!! !||||||! !!.!||||||!:!||||||||| ! lyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysVa 305692 : GTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGT : 305748 384 : eIleGlnIleSerIleThrThrPheGlyValValPheLysThrSerPheAlaTyrLeu : 402 :!!.!.:!!|||:!!:!!||||||||| !||| ! ! !...:::::: ::: lValAspLeuSerLeuSerThrPheGlyAsnValSerTyrTyrGlnTyrSerAsnIle 305749 : AGTTGATTTATCTTTATCCACATTTGGAAACGTGAGTTACTATcaatattccaatatt : 305805 403 : AsnMetIle : 405 ::::::::: SerIleVal 305806 : tcaattgtt : 305816 vulgar: gi|350422520|ref|XP_003493189.1| 315 405 . KQ414889.1 305133 305816 + 206 M 26 78 5 0 2 I 0 409 3 0 2 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305134 305816 206 + . gene_id 23 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305134 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305134 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305816 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305816 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305134 305816 206 + . alignment_id 23 ; Query gi|350422520|ref|XP_003493189.1| ; Align 305134 316 78 ; Align 305625 342 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 193 Query range: 343 -> 408 Target range: 244664 -> 244948 344 : ArgValGlyLysLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaL : 363 !:!||||||:!! !||||||||||||!!:|||||| !||||||!!.!:!! ! !| LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 244665 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 244722 364 : euGlyLeuValLeuValIleSerArgSerSerMetValValLysIleThrAlaGlyLy : 382 ||! !|||:!!|||:!!|||!.!||||||!:!|||||||||:!!|||||||||||||| euAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleThrAlaGlyLy 244723 : TCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCACCGCTGGAAA : 244779 383 : sPheIleGlnIleSerIleThrThrPheGlyVal >>>> Target Intron 1 > : 394 | ! :!!!!.!!:|||:!! !|||||||||! ! 89 bp sValLeuHisMetSerLeuTyrThrPheGlyAsp++ 244780 : AGTATTACATATGTCGCTTTACACGTTCGGCGATgt...................... : 244817 395 : >>> ValPheLysThrSerPheAlaTyrLeuAsnMetIleArgThrMet : 408 ||| ! ||||||.!!||||||||||||||||||:!! !! !||| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMet 244818 : ...agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAAATG : 244948 vulgar: gi|350422520|ref|XP_003493189.1| 343 408 . KQ414889.1 244664 244948 + 193 M 50 150 5 0 2 I 0 85 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244665 244948 193 + . gene_id 24 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244665 244814 . + . KQ414889.1 exonerate:protein2genome:local exon 244665 244814 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244815 244816 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244815 244903 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244902 244903 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244904 244948 . + . KQ414889.1 exonerate:protein2genome:local exon 244904 244948 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244665 244948 193 + . alignment_id 24 ; Query gi|350422520|ref|XP_003493189.1| ; Align 244665 344 150 ; Align 244904 394 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 187 Query range: 314 -> 391 Target range: 219358 -> 219662 315 : IleValTyrAlaIleValTyrAlaSerMetValPheAsnIlePheIlePheCysTyrI : 334 :!:..!||| !|||:!! ! !|||:!:...||||||||||||||||||||||||| ValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrI 219359 : GTGACATACATCATTCTACTTATATCCCTcactttcaacattttcatattttgctaCA : 219416 335 : leGlyGluIleValIleGluGln >>>> Target Intron 1 >>>> GlyGlu : 343 |||||||||||||| !|||||| 73 bp ! ... leGlyGluIleValAlaGluGln++ ++CysArg 219417 : TAGGAGAGATCGTTGCTGAACAggt.........................agTGtagg : 219516 344 : ArgValGlyLysLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaL : 363 ::::::|||::: !||||||! !||||||||||||||| !! |||! ! !| LysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysLysL 219517 : aaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAAAGC : 219576 364 : euGlyLeuValLeuValIleSerArgSerSerMetValValLysIleThrAlaGlyLy : 382 || !! !||||||..!|||:!!! !|||!:! !:!!|||:!:|||||||||!! euTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAs 219577 : TCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGGAAA : 219633 383 : sPheIleGlnIleSerIleThrThrPhe : 391 ..!.:!!:!!:!:||||||!:!|||||| nMetValGluLeuSerIleSerThrPhe 219634 : TATGGTCGAATTGTCTATCAGCACTTTT : 219662 vulgar: gi|350422520|ref|XP_003493189.1| 314 391 . KQ414889.1 219358 219662 + 187 M 27 81 5 0 2 I 0 69 3 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219359 219662 187 + . gene_id 25 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 219359 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219359 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219662 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219662 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219359 219662 187 + . alignment_id 25 ; Query gi|350422520|ref|XP_003493189.1| ; Align 219359 315 81 ; Align 219513 342 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 184 Query range: 4 -> 119 Target range: 299641 -> 299989 5 : SerSerGluProProIleSerAsnAlaPheTyrAlaHisAspTyrGluTyrSerIleG : 24 ||| !!!: !! !:!:!!!||| ! !||| !:!!||| .!.|||!!!:!:| SerValAspGlyGlnLeuArgAsnTyrHisTyrGlnAsnAspIleHisTyrThrLeuG 299642 : AGTGTTGACGGCCAATTGAGGAATTACCATTACCAAAATGACATACATTACACGCTGC : 299699 25 : lnValAsnArgTrpLeuMetGlnProIleGlyAlaTrpProLysLeu<->ThrLysTh : 42 ||:!! !!:!||||||:!!:!!|||||||||!.!|||! ! !||| !::::! lnMetCysGlnTrpLeuLeuLysProIleGlyValTrpArgLeuLeuAspGlnArgSe 299700 : AAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGCGATTGCTAGATCAACGTTC : 299756 43 : rAsnArgThrGlnArgLeuPheAlaLysLeuLeuAsnPheIleCysHisSerLeuIle : 61 !!:!!:! !:!!!.!||| !!:!!! :!!|||! |||||| !||| !:!: rSerLysLeuGluHisLeuValSerIleValLeuMetThrIleCysPheSerSerLeu 299757 : CAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATGACAATATGCTTCTCCAGTCTG : 299813 62 : IlePheThrIleValProCysIleLeuHisIleValTyrGluAlaGluSerSerArgM : 81 .!!|||! !:!!:!!|||! ! !! !:!!||| !!!:!! !! !:!!|||! !!.!: PhePheIleValLeuProSerGlyHisTyrIlePhePheAlaGluLysSerIleHisV 299814 : TTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCTTCGCGGAGAAAAGTATACACG : 299873 82 : etLysMetLysIleIleGlyProValSerHisTrpLeuMetGlyGluLeuAsnTyrCy : 100 !:|||:!!|||:!!.!!|||||||||.!! !!! ||| ..! :!!!!.||||| alLysValLysValPheGlyProValGlyPheCysLeuSerSerIleValLysTyrCy 299874 : TCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCATCGTCAAATATTG : 299930 101 : sCysLeuLeuSerLysThrAspAspIleIleArgCysIleLysHisValGluArgAsp : 119 |! !|||! ! !!!. !! !! .!! !|||||||||:!!||||||||||||||| sTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCysIleGlnHisValGluArgAsp 299931 : CTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGCATCCAACACGTCGAGAGAGAC : 299987 vulgar: gi|350422520|ref|XP_003493189.1| 4 119 . KQ414889.1 299641 299989 + 184 M 35 105 G 0 3 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299642 299989 184 + . gene_id 26 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299642 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299642 299989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299642 299989 184 + . alignment_id 26 ; Query gi|350422520|ref|XP_003493189.1| ; Align 299642 5 105 ; Align 299750 40 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 315 -> 394 Target range: 272869 -> 273176 316 : ValTyrAlaIleValTyrAlaSerMetValPheAsnIlePheIlePheCysTyrIleG : 335 ..!||| !!!::!! ! !||||||...||||||||||||||| |||||||||| ThrTyrPheMetIleLeuIleSerMetThrPheAsnIlePheIleValCysTyrIleG 272870 : ACGTATTTCATGATACTTATATCCATgacttttaacatttttatagtATGTTACATCG : 272927 336 : lyGlu >>>> Target Intron 1 >>>> IleValIleGluGlnGlyGluArg : 344 ||||| 70 bp ||| :::::: lyGlu-+ ++LysAsnSer***GlnCysLysLys 272928 : GCGAAat.........................agaaaaattcttaacagtgtaaaaaa : 273024 345 : ValGlyLysLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuG : 364 :::|||:!! !||||||||||||.!.|||||| !|||||| !||| ! !|||! IleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProGlyLysAspIleLeuA 273025 : attggcGAGGTAGTTTACATGACGAACTGGTACTATTTACCCGGCAAAGATATCCTCG : 273084 365 : lyLeuValLeuValIleSerArgSerSerMetValValLysIleThrAlaGlyLysPh : 383 !|||:!!|||:!!|||||||||!!!|||:!:|||:!!|||||||||||||||!:!.! spLeuIleLeuIleIleSerArgCysSerValValIleLysIleThrAlaGlyArgIl 273085 : ATCTGATTTTGATCATCTCAAGATGCAGTGTTGTGATTAAAATCACCGCTGGCAGGAT : 273141 384 : eIleGlnIleSerIleThrThrPheGlyValVal : 394 .:!!! !!:|||:!: !|||||||||! !||| eValProMetSerValTyrThrPheGlyAspVal 273142 : AGTTCCCATGTCTGTGTACACGTTCGGCGATGTA : 273176 vulgar: gi|350422520|ref|XP_003493189.1| 315 394 . KQ414889.1 272869 273176 + 177 M 21 63 5 0 2 I 0 66 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272870 273176 177 + . gene_id 27 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272870 272932 . + . KQ414889.1 exonerate:protein2genome:local exon 272870 272932 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272933 272934 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 272933 273002 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273001 273002 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273003 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 273003 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272870 273176 177 + . alignment_id 27 ; Query gi|350422520|ref|XP_003493189.1| ; Align 272870 316 63 ; Align 273003 337 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 343 -> 400 Target range: 238634 -> 238805 344 : ArgValGlyLysLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaL : 363 !:!||||||:!! !||||||||||||!!:|||||| !||||||!!.!:!! ! !| LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 238635 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 238692 364 : euGlyLeuValLeuValIleSerArgSerSerMetValValLysIleThrAlaGlyLy : 382 ||! !|||:!!|||:!!|||!.!||||||!:!:!!|||||||||:!!||||||||||| euAspLeuIleLeuIleIleLysArgSerAsnValValValLysValThrAlaGlyLy 238693 : TCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCACCGCTGGAAA : 238749 383 : sPheIleGlnIleSerIleThrThrPheGlyValValPheLysThrSerPheAla : 400 | ! :!!!!.!!:|||:!! !|||||||||! !||| !:!!|||!:!.!!||| sValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeuAla 238750 : AGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTTGCT : 238805 vulgar: gi|350422520|ref|XP_003493189.1| 343 400 . KQ414889.1 238634 238805 + 162 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238635 238805 162 + . gene_id 28 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238635 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238635 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238635 238805 162 + . alignment_id 28 ; Query gi|350422520|ref|XP_003493189.1| ; Align 238635 344 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 314 -> 394 Target range: 301716 -> 302036 315 : IleValTyrAlaIleValTyrAlaSerMetValPheAsnIlePheIlePheCysTyrI : 334 :!:..!!:! !! !:!!! .!!|||.!...!||||||||||||||||||||||||| LeuThrPhePheThrLeuLeuThrSerPheThrPheAsnIlePheIlePheCysTyrI 301717 : TTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACA : 301774 335 : leGlyGluIleValIleGluGln >>>> Target Intron 1 >>>> GlyGlu : 343 |||||||||||:!! !|||||| 80 bp !!... leGlyGluIleLeuSerGluGln++ ++CysSer 301775 : TCGGCGAGATTCTTTCCGAACAGgt.........................agTGTAGC : 301881 344 : ArgValGlyLysLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaL : 363 !:!:!!|||..! ! !||| !! !!!:||||||!.!|||||| |||! !|||! GlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaT 301882 : CAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCAT : 301941 364 : euGlyLeuValLeuValIleSerArgSerSerMetValValLysIleThrAlaGlyLy : 382 !! !|||:!!|||:!!! ! !! !|||..! ! !|||:!!||||||||||| yrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGlyLy 301942 : ACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAA : 301998 383 : sPheIleGlnIleSerIleThrThrPheGlyValVal : 394 |.!.|||.!.:!!|||:!:!.!||||||.!! !||| sIleIleAspLeuSerLeuAsnThrPheSerSerVal 301999 : AATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: gi|350422520|ref|XP_003493189.1| 314 394 . KQ414889.1 301716 302036 + 156 M 27 81 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301717 302036 156 + . gene_id 29 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301717 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301717 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301717 302036 156 + . alignment_id 29 ; Query gi|350422520|ref|XP_003493189.1| ; Align 301717 315 81 ; Align 301878 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 343 -> 398 Target range: 254280 -> 254445 344 : ArgValGlyLysLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaL : 363 !:!||||||:!! !||||||||||||!!:|||||| !||||||!!.!:!! ! !| LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 254281 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 254338 364 : euGlyLeuValLeuValIleSerArgSerSerMetValValLysIleThrAlaGlyLy : 382 ||! !|||:!!|||:!!|||!!!||||||!:!:!!||||||:!!|||||||||||||| euAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLy 254339 : TCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaa : 254395 383 : sPheIleGlnIleSerIleThrThrPheGlyValValPheLysThrSer : 398 |.........:::|||:!! !|||||||||! !||| !:!!|||!:! sIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 254396 : aatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 254445 vulgar: gi|350422520|ref|XP_003493189.1| 343 398 . KQ414889.1 254280 254445 + 155 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254281 254445 155 + . gene_id 30 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254281 254445 . + . KQ414889.1 exonerate:protein2genome:local exon 254281 254445 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254281 254445 155 + . alignment_id 30 ; Query gi|350422520|ref|XP_003493189.1| ; Align 254281 344 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 187 -> 245 Target range: 202712 -> 202886 188 : LeuLeuAspAlaArgPheSerProAlaAsnGluIleValPheValLeuGlnIleLeuS : 207 :!!:!!|||!.!|||!:!||||||!.!||||||||| !!||| !:!!!:!|||:!!: IleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleValA 202713 : ATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAG : 202770 208 : erGlyPheIleValThrSerValThrValGlyAlaCysGlyLeuAlaAlaValLeuTh : 226 !!! !.!!:!!:!! !.!!|||||||||||||||||| !!|||.!!|||:!!!!!.! laValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAl 202771 : CTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGC : 202827 227 : rMetHisAlaSerGlyGlnLeuAsnMetValValAlaArgLeuAspAsnLeuValAsp : 245 !:!:|||! !!!!||||||:!!:!!:!::!!:!!||| !!|||!!::!!|||:!!||| aValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMetAsp 202828 : GGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGAT : 202884 vulgar: gi|350422520|ref|XP_003493189.1| 187 245 . KQ414889.1 202712 202886 + 136 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202713 202886 136 + . gene_id 31 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202713 202886 . + . KQ414889.1 exonerate:protein2genome:local exon 202713 202886 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202713 202886 136 + . alignment_id 31 ; Query gi|350422520|ref|XP_003493189.1| ; Align 202713 188 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 338 -> 391 Target range: 283270 -> 283429 339 : IleGluGlnGlyGluArgValGlyLysLysValTyrMetThrGluTrpTyrArgLeuP : 358 .!!..!||| !!:!!!:!||||||:!! !||||||||||||.!.! !!:! !|||| PheArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuP 283271 : TTCCGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTAC : 283328 359 : roHisLysThrAlaLeuGlyLeuValLeuValIleSerArgSerSerMetValValLy : 377 || !!||| ! !|||..!|||:!!|||:!!|||||||||||||||:::|||:::|| roAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLy 283329 : CCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaa : 283385 378 : sIleThrAlaGlyLysPheIleGlnIleSerIleThrThrPhe : 391 ||||||||||...|||...||||||:::||| !|||||| sIleThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPhe 283386 : aattaccgctagcaaattaattcaaatGTCCGCGTACACGTTC : 283429 vulgar: gi|350422520|ref|XP_003493189.1| 338 391 . KQ414889.1 283270 283429 + 136 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283271 283429 136 + . gene_id 32 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283271 283429 . + . KQ414889.1 exonerate:protein2genome:local exon 283271 283429 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283271 283429 136 + . alignment_id 32 ; Query gi|350422520|ref|XP_003493189.1| ; Align 283271 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 336 -> 394 Target range: 214848 -> 215022 337 : IleValIleGluGlnGlyGluArgValGlyLysLysValTyrMetThrGluTrpTyrA : 356 |||:!!:!!:!!||| !!:!!!:!||||||:!! ! !||||||! !|||||||||| IleMetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrA 214849 : ATTATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACC : 214906 357 : rgLeuProHisLysThrAlaLeuGlyLeuValLeuValIleSerArgSerSerMetVa : 375 |||||||| !!!.! ! !||| !!! !:!!|||:!!!!::!!! !|||!:! rgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSe 214907 : GATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATC : 214963 376 : lValLysIleThrAlaGlyLysPheIleGlnIleSerIleThrThrPheGlyValVal : 394 !||||||.!!|||||||||!!..!.:!!:!!:!:||||||!:!||||||.!! !||| rValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214964 : CGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215020 vulgar: gi|350422520|ref|XP_003493189.1| 336 394 . KQ414889.1 214848 215022 + 133 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214849 215022 133 + . gene_id 33 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214849 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214849 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214849 215022 133 + . alignment_id 33 ; Query gi|350422520|ref|XP_003493189.1| ; Align 214849 337 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 337 -> 403 Target range: 292380 -> 292578 338 : ValIleGluGlnGlyGluArgValGlyLysLysValTyrMetThrGluTrpTyrArgL : 357 |||:!: ! ||||||.....!:!!!.! ! !||| ||||||||||||!.!| ValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnL 292381 : GTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATC : 292438 358 : euProHisLysThrAlaLeuGlyLeuValLeuValIleSerArgSerSerMetValVa : 376 |||||...::!! !|||! !! !:!!|||||||||:!!:!!! !!!!!.! !:! euProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIl 292439 : TGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGAT : 292495 377 : lLysIleThrAlaGlyLysPheIleGlnIleSerIleThrThrPheGlyValValPhe : 395 !|||:!!||||||||||||.!..!! :!!|||:!:!.!|||||||||!.!||| ! eLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArg 292496 : CAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGT : 292552 396 : LysThrSerPheAlaTyrLeuAsn : 403 :!!:!!!.!.!.!.!! :!!:!! GluSerLysLeuValLeuIleHis 292553 : GAATCAAAACTAGTCTTGATACAC : 292578 vulgar: gi|350422520|ref|XP_003493189.1| 337 403 . KQ414889.1 292380 292578 + 128 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292381 292578 128 + . gene_id 34 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292381 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292381 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292381 292578 128 + . alignment_id 34 ; Query gi|350422520|ref|XP_003493189.1| ; Align 292381 338 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 340 -> 391 Target range: 206239 -> 206392 341 : GlnGlyGluArgValGlyLysLysValTyrMetThrGluTrpTyrArgLeuProHisL : 360 |||..!.!. !|||||| !! ! !! !! !..!.!.|||||||||||||||:!!! GlnAsnHisValValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnA 206240 : CAGAACCACGTCGTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACA : 206297 361 : ysThrAlaLeuGlyLeuValLeuValIleSerArgSerSerMetValValLysIleTh : 379 :! !|||! !..!:!!:!!|||:!!|||:!!! !|||!:! !:!!|||:!!|| rgHisAlaArgSerMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuTh 206298 : GACATGCGCGCTCTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAAC : 206354 380 : rAlaGlyLysPheIleGlnIleSerIleThrThrPhe : 391 ||||||||||.!..!!:!!!!:|||:!!.!!!:!||| rAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206355 : AGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206392 vulgar: gi|350422520|ref|XP_003493189.1| 340 391 . KQ414889.1 206239 206392 + 105 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206240 206392 105 + . gene_id 35 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206240 206392 . + . KQ414889.1 exonerate:protein2genome:local exon 206240 206392 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206240 206392 105 + . alignment_id 35 ; Query gi|350422520|ref|XP_003493189.1| ; Align 206240 341 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 314 -> 341 Target range: 214659 -> 214740 315 : IleValTyrAlaIleValTyrAlaSerMetValPheAsnIlePheIlePheCysTyrI : 334 :!!..!|||!.!:!::!!||| !|||:::...||||||||||||||||||||||||| ValThrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrI 214660 : GTAACTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCA : 214717 335 : leGlyGluIleValIleGluGln : 341 ||||||||:!!||| !|||||| leGlyGluLeuValSerGluGln 214718 : TAGGCGAGCTTGTGTCTGAACAG : 214740 vulgar: gi|350422520|ref|XP_003493189.1| 314 341 . KQ414889.1 214659 214740 + 103 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214660 214740 103 + . gene_id 36 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214660 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214660 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214660 214740 103 + . alignment_id 36 ; Query gi|350422520|ref|XP_003493189.1| ; Align 214660 315 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1238 Query range: 0 -> 405 Target range: 256601 -> 258738 1 : MetMetThrGluAlaValIleValGluSerAspSerAsnSerAsnSerAspTyrSerL : 20 |||! !.!||| !!.!:!:|||:!!!!!:!!! !!!.||| !!||||||||||||| MetThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerL 256602 : ATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTC : 256659 21 : euGlnLeuAsnArgTrpPheLeuGlnSerIleGlyAlaTrpProSerSerAlaSerTh : 39 |||||||||||||||||||||||:!! !!||||||||||||||| !!|||:!!||||| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 256660 : TCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCAC : 256716 40 : rThrLysLeuGluLysIleValSerPheIleLeuAsnIleValCysLeuSerIleVal : 58 ||||! ||||||::!! !||||||.!!:!!|||||||||||||||! !.!! !:!! rThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIle 256717 : TACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATA : 256773 59 : IleLeuAlaValIleProSerLeuLeuLeuMetIleLeuGlyAspGluSerPheAsnP : 78 :!:!!!.!!:!!||||||!!!||||||! !:!:.!!|||! !|||!!:|||||| ! . LeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrM 256774 : TTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAca : 256833 79 : heLysLeuLysMetPheGlyTyrValSerHisTrpIlePheSerGlyIleAsnTyrTh : 97 ..|||:::||| |||||| !:!!||||||||||||.!!||| !! !|||||||| etLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrTh 256834 : tgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACAC : 256890 98 : rAlaLeuLeuThrHisGlyLysAsnIleArgGlnCysIleGluHisIleGluAlaAsp : 116 | !|||||| !!!.||||||:!!|||||| ! |||:!!||||||||||||.!!||| rLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAsp 256891 : GTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGAT : 256947 117 : TrpArgThrValThrArgGluGluAspLysAsnValMetLeuLysAsnAlaLysLeuG : 136 ||||||! !|||! !||||||:!!|||:!!.!.||||||:!!|||||||||!:!!!!| TrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheG 256948 : TGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCG : 257007 137 : lyArgTyrIleAlaGlyPheSerValIlePheValGlnGlySerValLeuCysPhePh : 155 ||||||||:!:||| !|||!!!!.! !.!!:!!|||.!!.!!|||...|||||||| lyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePh 257008 : GTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttctt : 257064 156 : ePheAlaAlaAlaLeuSerThrValGluMetGlnValGlyAsnGlu<->ArgIleLeu : 173 | :!!:!!||||||!:!|||! ! !!!:!!.|||||||||||| ! !|||:!! eValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleVal 257065 : cgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTG : 257121 174 : HisLeuLeuProCysAlaValTyrLysLysLeuValAsnValAspAspSerLeuThrA : 193 !..:!!|||||| !.!!|||||||||||||||:!!|||||||||.!.|||! !|||| ArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrA 257122 : CGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGA : 257181 194 : snGluIleMetLeuLeuLeuGlnLeuTrpSerThrValIleAlaAsnSerSerThrSe : 212 ||||||||:!!:!!!!!:!!||| !||||||:!!:!!||||||!.!!!!|||||| snGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrVa 257182 : ACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGT : 257238 213 : rGlyIlePheGlyLeuSerAlaValLeuAlaAlaHisSerCysGlyGlnLeuAsnVal : 231 !.!!||||||.!!|||:!!||||||!!!|||.!!|||:!!! !|||||||||!.!||| lSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrVal 257239 : TAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTG : 257295 232 : IleMetValTrpIleThrGluPheValAsnLysAlaArgGluArgThrLysThrGlyA : 251 :!!||| !|||||||||||||||||||||:!!:!!|||.!.||| |||||| LeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheP 257296 : CTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttc : 257355 252 : snPheIleGluIleGlyMetIleValGluArgHisLeuArgThrLeu{As} >>>> : 267 |||! :!!||||||:!!|||||||||!.!|||||||||..!|||{!:} roPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Se}++ 257356 : ctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt..... : 257407 268 : Target Intron 1 >>>> {n}PheIleSerCysIleGluAspValMetPheLys : 278 76 bp {!}|||||||||! !||||||!!:|||||| !::! ++{r}PheIleSerTyrIleGluGluValMetAsnArg 257408 : ....................ag{T}TTCATATCATATATCGAGGAAGTGATGAACCGA : 257512 279 : IleTyrPheValGluMetPheArgSerThrMetAspIleCysValIleGlyTyrTyrI : 298 |||! !|||:!!|||:!!||||||!!!|||:!!! !||||||:!!:!:|||||||||| IleCysPheLeuGluLeuPheArgCysThrLeuAlaIleCysMetLeuGlyTyrTyrI 257513 : ATATGTTTTTTAGAGTTGTTTAGATGCACGCTGGCTATATGCATGCTGGGATACTACA : 257572 299 : leLeuSer >>>> Target Intron 2 >>>> GluTrpAlaAspGlnAspIle : 307 |||||:!! 684 bp ||||||:!! ||||||||| leLeuAla++ ++GluTrpSerThrGlnAspIle 257573 : TTCTTGCGgt.........................aggaATGGTCTACGCaagatatt : 258283 308 : GlnAsnLeuIleThrTyrPheMetMetLeuIleSerIleCysPheAspIlePheValI : 327 ||||||||| :::|||||||||!!:|||||||||::: |||:::|||||||||| GlnAsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValI 258284 : caaaatttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaa : 258343 328 : leCysTyrIleSerGluIleLeuThrGluGln >>>> Target Intron 3 >>> : 338 |||||||||||.!!|||||||||||||||||| 90 bp leCysTyrIleGlyGluIleLeuThrGluGln++ 258344 : tatgttACATAGGTGAAATATTAACAGAACAGgt........................ : 258378 339 : > CysGlnLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAsnL : 356 |||:!!|||||||||!!:|||||||||||||||:!!|||||||||||||||:!!| ++CysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspL 258379 : .agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACA : 258520 357 : ysValIleLeuAspLeuIleLeuIleIleAlaArgSerSerThrValValHisLeuTh : 375 || !||||||||||||||||||:!!|||||||||||||||..!||||||!!.:!!|| ysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleTh 258521 : AAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCAC : 258577 376 : rAlaGlyLysPheIleGlnMetSerValTyrThrPheGlyAsn >>>> Target I : 390 |||||||||||||......||||||:!!|||||||||.!!:!! 69 rAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAsp++ 258578 : CGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATgt............. : 258624 391 : ntron 4 >>>> ValLeuLysThrGlyPheAlaTyrLeuAsnMetLeuGlnGlnMe : 404 bp |||:!!||||||..!|||||||||||||||:!:|||!::|||:! ++ValIleLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnVa 258625 : ............agGTAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGT : 258733 405 : tThr : 405 ::!! lSer 258734 : ATCG : 258738 vulgar: gi|350422517|ref|XP_003493188.1| 0 405 . KQ414889.1 256601 258738 + 1238 M 170 510 G 0 3 M 96 288 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256602 258738 1238 + . gene_id 1 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256602 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256602 257404 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256602 258738 1238 + . alignment_id 1 ; Query gi|350422517|ref|XP_003493188.1| ; Align 256602 1 510 ; Align 257115 171 288 ; Align 257482 268 99 ; Align 258265 301 111 ; Align 258466 338 156 ; Align 258691 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1203 Query range: 0 -> 405 Target range: 259721 -> 262201 1 : MetMetThrGluAlaValIleValGluSerAspSerAsnSerAsnSerAspTyrSerL : 20 |||! !!.!:!!:!!|||.!!||||||!!!..!! !!.!|||:!!||||||||||||| MetThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerL 259722 : ATGACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCC : 259779 21 : euGlnLeuAsnArgTrpPheLeuGlnSerIleGlyAlaTrpProSerSerAlaSerTh : 39 |||||!!!|||||||||||||||:!! !!||||||||||||||| !!|||:!!||||| euGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 259780 : TCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCAC : 259836 40 : rThrLysLeuGluLysIleValSerPheIleLeuAsnIleValCysLeuSerIleVal : 58 ||||!:!||||||||||||:!!||| !!||||||! !.!!:!!|||! !|||! !:!! rThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIle 259837 : GACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATA : 259893 59 : IleLeuAlaValIleProSerLeuLeuLeuMetIleLeuGlyAspGluSerPheAsnP : 78 :!::!!.!!:!!||||||!!!:!!|||! !|||:!!|||! ! ! ||||||!!. !!. LeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrM 259894 : CTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACA : 259953 79 : heLysLeuLysMetPheGlyTyrValSerHisTrpIlePheSerGlyIleAsnTyrTh : 97 !.||| !|||:!!.!!||| !:!!!!!||||||.!! !!.!! !!||||||||||| etLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrTh 259954 : TGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACAC : 260010 98 : rAlaLeuLeuThrHisGlyLysAsnIleArgGlnCysIleGluHisIleGluAlaAsp : 116 |.!!|||||| !...|||!:!:!!|||! !...|||:!:||||||:!:||| !||| rThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAsp 260011 : AACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGAT : 260067 117 : TrpArgThrValThrArgGluGluAspLysAsnValMetLeuLysAsnAlaLysLeuG : 136 ||||||! !:!!|||||||||:!!|||:!!||||||||||||!:! !!||||||!!!| TrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheG 260068 : TGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCG : 260127 137 : lyArgTyrIleAlaGlyPheSerValIlePheValGlnGlySerValLeuCysPhePh : 155 ||||||||:!!|||!.!! !!!!!.! !||||||||||||.!!||||||||||||! lyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCy 260128 : GCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTG : 260184 156 : ePheAlaAlaAlaLeuSerThrValGluMetGlnValGlyAsnGlu<->ArgIleLeu : 173 !!!.!.!.!!!.!|||||||||! !! !!!:||||||||||||||| ||||||:!! sLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal 260185 : TTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTT : 260241 174 : HisLeuLeuProCysAlaValTyrLysLysLeuValAsnValAspAspSerLeuThrA : 193 |||||||||||||||||||||||||||:!!|||:!!||||||:!!||||||! !! !| HisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetA 260242 : CATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGA : 260301 194 : snGluIleMetLeuLeuLeuGlnLeuTrpSerThrValIleAlaAsnSerSerThrSe : 212 ||||||||:!:|||:!!:!!|||!!! ||| ! !!|||!.!|||||||||||| snGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrVa 260302 : ACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGT : 260358 213 : rGlyIlePheGlyLeuSerAlaValLeuAlaAlaHisSerCysGlyGlnLeuAsnVal : 231 !|||||||||.!!|||:!!|||||||||.!!||||||:!!|||||||||||||||||| lGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnVal 260359 : TGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTG : 260415 232 : IleMetValTrpIleThrGluPheValAsnLysAlaArgGluArgThrLysThrGlyA : 251 :!!|||! !||||||||||||||||||:!!:!!:!!|||.!.|||! !|||! !!.! LeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaP 260416 : CTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTC : 260475 252 : snPheIleGluIleGlyMetIleValGluArgHisLeuArgThrLeu{As} >>>> : 267 !|||! |||||||||:!!|||||||||!.!|||||||||.!!|||{!.} roPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeu{Th}++ 260476 : CTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC{AC}gt..... : 260527 268 : Target Intron 1 >>>> {n}PheIleSerCysIleGluAspValMetPheLys : 278 257 bp {!}||||||||| !!||||||||||||||| !::! ++{r}PheIleSerArgIleGluAspValMetAsnArg 260528 : ....................ag{C}TTCATATCGCGTATCGAGGATGTGATGAACCGG : 260813 279 : IleTyrPheValGluMetPheArgSerThrMetAspIleCysValIleGlyTyrTyrI : 298 |||! !|||:!!|||:!!||||||!!!|||:!!|||||||||:!!:!!|||||||||| IleCysPheLeuGluLeuPheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrI 260814 : ATATGCTTCCTGGAGTTGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATA : 260873 299 : leLeuSer >>>> Target Intron 2 >>>> GluTrpAlaAspGlnAspIle : 307 |||||! ! 852 bp |||||||||!!:||||||||| leLeuMet++ ++GluTrpAlaGluGlnAspIle 260874 : TTCTTATGgt.........................agGAATGGGCTGAGCAAGATATA : 261752 308 : GlnAsnLeuIleThrTyrPheMetMetLeuIleSerIleCysPheAspIlePheValI : 327 ||||||||| !|||||||||||||||||||||:!!|||||||||:!!:!!|||:!!| GlnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheIleI 261753 : CAAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAA : 261812 328 : leCysTyrIleSerGluIleLeuThrGluGln >>>> Target Intron 3 >>> : 338 |||||||||||.!!|||||||||||||||||| 81 bp leCysTyrIleGlyGluIleLeuThrGluGln++ 261813 : TCTGTTACATCGGTGAAATACTAACGGAACAGgt........................ : 261847 339 : > CysGlnLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAsnL : 356 |||..!|||||||||!!:|||||||||||||||||||||||||||||||||:!!| ++CysSerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuProAspL 261848 : .agTGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACCTGATA : 261980 357 : ysValIleLeuAspLeuIleLeuIleIleAlaArgSerSerThrValValHisLeuTh : 375 || !||||||||||||||||||||||||||||||!.! !! !!! ! ! ! !!!! ysSerIleLeuAspLeuIleLeuIleIleAlaArgLysProProGlyAsn***PheLy 261981 : AAAGTATCCTTGATTTGATTTTGATCATTGCACGAAAACCGCCGGGAAATTAGTTCAA : 262037 376 : rAlaGlyLysPheIleGlnMetSer{Va} >>>> Target Intron 4 >>>> : 384 !..! ::!|||! !!:: !:!!{:!} 75 bp sCys---ArgPheThrArgSerAla{Il}++ ++ 262038 : ATGT---CGGTTTACACGTTCGGCG{AT}gt.........................ag : 262136 385 : {l}TyrThrPheGlyAsnValLeuLysThrGlyPheAlaTyrLeuAsnMetLeuGlnG : 403 {!} !.!. !.!.|||:!!||||||!.!|||||||||||||||:!!|||!::| {e}ProLeuIlePheGlnValValLysThrAlaPheAlaTyrLeuAsnLeuLeuArgG 262137 : {T}CCGTTGATATTCCAGGTGGTTAAAACTGCTTTCGCGTATCTGAATCTGTTGCGTC : 262193 404 : lnMetThr : 405 |||||||| lnMetThr 262194 : AAATGACG : 262201 vulgar: gi|350422517|ref|XP_003493188.1| 0 405 . KQ414889.1 259721 262201 + 1203 M 170 510 G 0 3 M 96 288 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 39 117 G 1 0 M 6 18 S 0 2 5 0 2 I 0 71 3 0 2 S 1 1 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259722 262201 1203 + . gene_id 2 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259722 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259722 260524 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262062 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262062 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 262063 262064 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 262063 262137 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 262136 262137 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 262138 262201 . + . KQ414889.1 exonerate:protein2genome:local exon 262138 262201 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259722 262201 1203 + . alignment_id 2 ; Query gi|350422517|ref|XP_003493188.1| ; Align 259722 1 510 ; Align 260235 171 288 ; Align 260783 268 99 ; Align 261734 301 111 ; Align 261926 338 117 ; Align 262043 378 18 ; Align 262139 385 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 846 Query range: 0 -> 300 Target range: 266586 -> 267558 1 : MetMetThrGluAlaValIleValGluSerAspSerAsnSerAsnSerAspTyrSerL : 20 ||| !.!|||:!!:!!:!!:!!|||:!!:!! !|||||| ||||||||||||| MetAlaAsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerL 266587 : ATGGCTAACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCC : 266644 21 : euGlnLeuAsnArgTrpPheLeuGlnSerIleGlyAlaTrpProSerSerAlaSerTh : 39 |||||||||||||||||||||||:!! !!||||||||||||||| !!! !:!! !|| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuTh 266645 : TGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCAC : 266701 40 : rThrLysLeuGluLysIleValSerPheIleLeuAsnIleValCysLeuSerIleVal : 58 |:!!|||||||||::!|||||||||!:! !|||! !:!!:!!|||! !!!! !:!! rSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIle 266702 : ATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATA : 266758 59 : IleLeuAlaValIleProSerLeuLeuLeuMetIleLeuGlyAspGluSerPheAsnP : 78 :!:!!!.!!|||||||||!!!|||!!!! !:!::!!|||! !|||||||||.!!..! LeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgT 266759 : CTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTA : 266818 79 : heLysLeuLysMetPheGlyTyrValSerHisTrpIlePheSerGlyIleAsnTyrTh : 97 |||:!!|||:!!|||||| !:!!|||||||||.!! !!.!!|||||||||||||| hrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrTh 266819 : CGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACAC : 266875 98 : rAlaLeuLeuThrHisGlyLysAsnIleArgGlnCysIleGluHisIleGluAlaAsp : 116 |.!!|||||| !!.!.!!|||.!.|||||| |||:!!||||||!!::!!.!!||| rThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAsp 266876 : CACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGAT : 266932 117 : TrpArgThrValThrArgGluGluAspLysAsnValMetLeuLysAsnAlaLysLeuG : 136 ||||||! !||||||||| !|||||||||.!.||||||||||||||||||!:!:!!| TrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleG 266933 : TGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCG : 266992 137 : lyArgTyrIleAlaGlyPheSerValIlePheValGlnGlySerValLeuCysPhePh : 155 |||||||||||||| !|||!!!!.! |||:!!||| !!.!!|||||| !!!:!! lyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCy 266993 : GTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTG : 267049 156 : ePheAlaAlaAlaLeuSerThrValGluMetGlnValGlyAsnGlu<->ArgIleLeu : 173 ! ! !.!!|||!!!!!!! ! ! :!!:!!|||||||||||| ||||||:!! sValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleVal 267050 : TGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTA : 267106 174 : HisLeuLeuProCysAlaValTyrLysLysLeuValAsnValAspAspSerLeuThrA : 193 ||||||||||||||||||||||||||||||:!!:!! |||||| !|||! !|||| HisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrA 267107 : CATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGA : 267166 194 : snGluIleMetLeuLeuLeuGlnLeuTrpSerThrValIleAlaAsnSerSerThrSe : 212 ||||||||:!:|||:!!! !|||!!! ||| ! !!|||!.!|||||||||..! snGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValVa 267167 : ACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGT : 267223 213 : rGlyIlePheGlyLeuSerAlaValLeuAlaAlaHisSerCysGlyGlnLeuAsnVal : 231 !||| !|||.!!|||:!!||||||!!!|||||||||:!!||||||||||||!:!||| lGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerVal 267224 : CGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTG : 267280 232 : IleMetValTrpIleThrGluPheValAsnLysAlaArgGluArgThrLysThrGlyA : 251 :!:|||:!!||||||! !||||||||||||::!:!!|||!!:!!!!.!|||!.!! ! LeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValC 267281 : CTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTT : 267340 252 : snPheIleGluIleGlyMetIleValGluArgHisLeuArgThrLeu{As} >>>> : 267 !||| !:!!||||||:!!:!!||||||!.!|||||||||..!|||{!:} ysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 267341 : GCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG}gt..... : 267392 268 : Target Intron 1 >>>> {n}PheIleSerCysIleGluAspValMetPheLys : 278 69 bp {!}||||||:!! !!||||||..!|||||| !:!! ++{r}PheIleAlaArgIleGluSerValMetSerGlu 267393 : ....................ag{C}TTCATAGCACGTATCGAAAGTGTAATGAGCGAA : 267490 279 : IleTyrPheValGluMetPheArgSerThrMetAspIleCysValIleGlyTyrTyrI : 298 |||! !|||:!!|||:!!|||!:!!!!||||||||||||||||||:!!.!!||||||| IleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSerTyrTyrI 267491 : ATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCTATTATA : 267550 299 : leLeuSer : 300 |||||!!! leLeuThr 267551 : TCCTTACG : 267558 vulgar: gi|350422517|ref|XP_003493188.1| 0 300 . KQ414889.1 266586 267558 + 846 M 170 510 G 0 3 M 96 288 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266587 267558 846 + . gene_id 3 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266587 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266587 267389 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267558 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267558 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266587 267558 846 + . alignment_id 3 ; Query gi|350422517|ref|XP_003493188.1| ; Align 266587 1 510 ; Align 267100 171 288 ; Align 267460 268 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 820 Query range: 4 -> 300 Target range: 274344 -> 275309 5 : AlaValIleValGluSerAspSerAsnSerAsnSerAspTyrSerLeuGlnLeuAsnA : 24 |||:!!! !||| :!!:!!! !:!!||| !||||||||||||||||||||||||| AlaIleAsnValThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnA 274345 : GCGATAAACGTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACC : 274402 25 : rgTrpPheLeuGlnSerIleGlyAlaTrpProSerSerAlaSerThrThrLysLeuGl : 43 |||||||||||:!! !!|||||||||||||||! !:!!:!! !!|||||||||!!!|| rgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGl 274403 : GATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGA : 274459 44 : uLysIleValSerPheIleLeuAsnIleValCysLeuSerIleValIleLeuAlaVal : 62 |::!|||:!!||| !:::||| ...:::||| !!!!.!!:!!:!!! !.!!||| uArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrVal 274460 : ACGAATCCTTTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTT : 274516 63 : IleProSerLeuLeuLeuMetIleLeuGlyAspGluSerPheAsnPheLysLeuLysM : 82 |||||||||:!!!!!! !!!:||||||! !|||||||||.!!:!!.!.|||||||||: IleProSerIlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysL 274517 : ATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGT : 274576 83 : etPheGlyTyrValSerHisTrpIlePheSerGlyIleAsnTyrThrAlaLeuLeuTh : 101 !!.!!||| !:!!.!!||||||.!!.!!.!!|||||||||||||||.!!|||||| euLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLe 274577 : TGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCT : 274633 102 : rHisGlyLysAsnIleArgGlnCysIleGluHisIleGluAlaAspTrpArgThrVal : 120 !!.!.!!|||.!.|||||| |||:!:||||||!!::!!.!!|||||||||! !||| uArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleVal 274634 : ACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTG : 274690 121 : ThrArgGluGluAspLysAsnValMetLeuLysAsnAlaLysLeuGlyArgTyrIleA : 140 |||||| !||||||:!!.!.|||||||||||||||||||||:!!|||||||||:!!| ThrArgProGluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValA 274691 : ACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCG : 274750 141 : laGlyPheSerValIlePheValGlnGlySerValLeuCysPhePhePheAlaAlaAl : 159 || !|||!!!!.! |||:!!||| !!.!!|||||||||!:!! ! ! !.!!|| laIlePheCysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAl 274751 : CGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGC : 274807 160 : aLeuSerThrValGluMetGlnValGlyAsnGlu<->ArgIleLeuHisLeuLeuPro : 177 |!!!!!!! ! ! :!:||||||||||||||| |||! !:!!|||:!!|||||| aPheThrMetGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuPro 274808 : GTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCG : 274864 178 : CysAlaValTyrLysLysLeuValAsnValAspAspSerLeuThrAsnGluIleMetL : 197 ||| !!.!|||||||||:!!||| |||||| |||! !||||||||||||:!:| CysLysAlaTyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValL 274865 : TGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCC : 274924 198 : euLeuLeuGlnLeuTrpSerThrValIleAlaAsnSerSerThrSerGlyIlePheGl : 216 || !! !|||!!! !||| ! !!|||!.!|||||||||.!! !||| !|||.! euAlaSerGlnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSe 274925 : TTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAG : 274981 217 : yLeuSerAlaValLeuAlaAlaHisSerCysGlyGlnLeuAsnValIleMetValTrp : 235 !|||:!!||||||!!!|||||||||:!!! !|||||||||!:!|||:!:|||:!!||| rLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrp 274982 : CCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGG : 275038 236 : IleThrGluPheValAsnLysAlaArgGluArgThrLysThrGlyAsnPheIleGluI : 255 |||||||||||||||||| ! :!!|||!!::::...|||... ||| !|||| IleThrGluPheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluI 275039 : ATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGA : 275098 256 : leGlyMetIleValGluArgHisLeuArgThrLeu{As} >>>> Target Intro : 267 |||||:!!:!!||||||!.!|||||||||..!|||{!:} 74 bp leGlyValValValGluHisHisLeuArgValLeu{Se}++ 275099 : TCGGCGTGGTTGTCGAACATCATCTGAGGGTACTC{AG}gt................. : 275138 268 : n 1 >>>> {n}PheIleSerCysIleGluAspValMetPheLysIleTyrPheVal : 282 {!}||||||:!! !!||||||||||||||| !::!|||! !|||:!! ++{r}PheIleAlaArgIleGluAspValMetAsnArgIleCysPheMet 275139 : ........ag{T}TTCATAGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATG : 275253 283 : GluMetPheArgSerThrMetAspIleCysValIleGlyTyrTyrIleLeuSer : 300 |||:!!|||!:!!!!|||:!!|||!!:|||:!!:!!|||||||||||||||!!! GluLeuPheLysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleLeuThr 275254 : GAATTGTTCAAGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTCTCACG : 275309 vulgar: gi|350422517|ref|XP_003493188.1| 4 300 . KQ414889.1 274344 275309 + 820 M 166 498 G 0 3 M 96 288 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274345 275309 820 + . gene_id 4 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274345 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274345 275135 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275309 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275309 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274345 275309 820 + . alignment_id 4 ; Query gi|350422517|ref|XP_003493188.1| ; Align 274345 5 498 ; Align 274846 171 288 ; Align 275211 268 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 675 Query range: 12 -> 266 Target range: 262834 -> 263599 13 : AsnSerAsnSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuGlnSerIleGlyA : 32 ..!||| !||||||||||||||||||:!!|||||||||.!.|||:!! !!||||||| GlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyA 262835 : GGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTG : 262892 33 : laTrpProSerSerAlaSerThrThrLysLeuGluLysIleValSerPheIleLeuAs : 51 |||||||| !|||||||||! !:!!!:!:!!|||::!|||:!!!!!|||:!!|||! laTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIl 262893 : CATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAAT : 262949 52 : nIleValCysLeuSerIleValIleLeuAlaValIleProSerLeuLeuLeuMetIle : 70 !:!!||||||! !!!!:!!:!!:!!! !.!!||||||||||||:!!|||! !!!::!! eValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeuHisIleVal 262950 : CGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTC : 263006 71 : LeuGlyAspGluSerPheAsnPheLysLeuLysMetPheGlyTyrValSerHisTrpI : 90 |||! !! !|||!:!|||:!!.!.||||||:!!:!:.!!||| :!!.!!!!.|||. LeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpP 263007 : CTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGT : 263066 91 : lePheSerGlyIleAsnTyrThrAlaLeuLeuThrHisGlyLysAsnIleArgGlnCy : 109 !! !!.!! !|||||||||||| !|||||| !|||.!!|||:!!|||!:! || heValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCy 263067 : TCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTG : 263123 110 : sIleGluHisIleGluAlaAspTrpArgThrValThrArgGluGluAspLysAsnVal : 128 |:!::!!|||:!::!!! !|||||| !!! !||||||||| !||||||:!!..!:!! sValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIle 263124 : CGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATC : 263180 129 : MetLeuLysAsnAlaLysLeuGlyArgTyrIleAlaGlyPheSerValIlePheValG : 148 ||||||||||||||||||! !|||||||||:!:|||!.!! !!!!!.!||||||:!!| MetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetG 263181 : ATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGC : 263240 149 : lnGlySerValLeuCysPhePhePheAlaAlaAlaLeuSerThrValGluMetGlnVa : 167 || !|||:!!:!!||| ! !.!.!.!.!!|||!!!!!!||| !! !!!::!!! lnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAs 263241 : AAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGA : 263297 168 : lGlyAsnGlu<->ArgIleLeuHisLeuLeuProCysAlaValTyrLysLysLeuVal : 185 !||||||||| |||||||||!.!:!!||||||||| !!|||||||||:!!:!!:!! pGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLysGluIleIle 263298 : CGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATT : 263354 186 : AsnValAspAspSerLeuThrAsnGluIleMetLeuLeuLeuGlnLeuTrpSerThrV : 205 |||||| !:!! !||||||||||||.!.||| ! !|||!!! !||| ! ProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyP 263355 : CCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTT : 263414 206 : alIleAlaAsnSerSerThrSerGlyIlePheGlyLeuSerAlaValLeuAlaAlaHi : 224 !!|||!.!!.!:!!!!!||| !||| !||||||:!!!!!||||||!!!|||!.!|| heIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHi 263415 : TCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCA : 263471 225 : sSerCysGlyGlnLeuAsnValIleMetValTrpIleThrGluPheValAsnLysAla : 243 |:!!||||||||||||||||||:!:||| !|||||||||||||||||||||:!!:!! sAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSer 263472 : TGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCC : 263528 244 : ArgGluArgThrLysThrGlyAsnPheIleGluIleGlyMetIleValGluArgHisL : 263 |||!!:..!!.!|||!.! ! !!|||! !|||||||||:!!|||||||||!.!|||| ArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisL 263529 : AGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATC : 263588 264 : euArgThrLeu : 266 |||||..!||| euArgValLeu 263589 : TGAGAGTTCTG : 263599 vulgar: gi|350422517|ref|XP_003493188.1| 12 266 . KQ414889.1 262834 263599 + 675 M 158 474 G 0 3 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262835 263599 675 + . gene_id 5 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262835 263599 . + . KQ414889.1 exonerate:protein2genome:local exon 262835 263599 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262835 263599 675 + . alignment_id 5 ; Query gi|350422517|ref|XP_003493188.1| ; Align 262835 13 474 ; Align 263312 171 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 548 Query range: 17 -> 400 Target range: 284523 -> 287252 18 : TyrSerLeuGlnLeuAsnArgTrpPheLeuGlnSerIleGlyAlaTrpProSerSerA : 37 ||||||:!!|||:!!|||||||||||||||:!! !!||||||!.!|||||| !||| TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 38 : laSerThrThrLysLeuGluLysIleValSerPheIleLeuAsnIleValCysLeuSe : 56 !!!!..!|||! |||||||||||| !||| ! :!!||| :!!:!! !!! !! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 57 : rIleValIleLeuAlaValIleProSerLeuLeuLeuMetIleLeuGlyAspGlu<-> : 75 !:!::!! !!!! !:!!:!!|||!!! !|||! !! :!:|||! ! ! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 76 : SerPheAsnPheLysLeuLysMetPheGlyTyrValSerHisTrpIlePheSerGlyI : 94 ..!.!!:!! |||:!!||||||.!!||| !:!!||| !!! !!:.!.:!!!.!| AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 95 : leAsnTyrThrAlaLeuLeuThrHisGlyLysAsnIleArgGlnCysIleGluHisIl : 113 ||!!.||| ! !|||:!!:!!!.!||| !!.||| !!||||||:!::!! !!|| leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 114 : eGluAlaAspTrpArgThrVal<-><-><->ThrArgGluGluAspLysAsnValMet : 129 |...||||||||| ! !..! !:::::||||||::::::...:::||| eArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMet 284813 : TCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTG : 284869 130 : LeuLysAsnAlaLysLeuGlyArgTyrIleAlaGlyPheSerValIlePheValGlnG : 149 ! ! !:!|||!:!:!!||||||! !:!:||| !|||!!!!.! !|||:!! ! . ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrS 284870 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATT : 284929 150 : lySerValLeuCysPhePhePheAlaAlaAlaLeuSerThrValGluMetGlnValGl : 168 .!.!!! !!!!! !!:! ! !.! ! !!|||!!!||||||...! !:!!:!! erGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIl 284930 : CCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCAT : 284986 169 : yAsnGluArgIleLeuHisLeuLeuProCysAlaValTyrLysLysLeuValAsnVal : 187 !:!!.!...!! !:!!...! !! ! !!! ! !!:!!|||::: |||:!!:!! ! eAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 284987 : CGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCG : 285043 188 : AspAspSerLeuThrAsnGluIleMetLeuLeuLeuGlnLeuTrpSerThrValIleA : 207 ! !|||! !:!! !||||||:!!! !!!!:!!|||! !! !:!!.!! !!:!! ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValI 285044 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTA : 285103 208 : laAsnSerSerThrSerGlyIlePheGlyLeuSerAlaValLeuAlaAlaHisSerCy : 226 ! !!||| !||| !||| !! !.!!|||:!!||||||!!!!.! !||| !|| leTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCy 285104 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTG : 285160 227 : sGlyGlnLeuAsnValIleMetValTrpIleThrGluPheValAsnLysAlaArgGlu : 245 |||||||!!!!..:!!:!!:!!..! !:!: !:!!.!!|||:!! !!.!!:!! ! sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLysGly 285161 : TGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGG : 285217 246 : ArgThrLysThrGlyAsnPheIleGlu<->IleGlyMetIleValGluArgHisLeuA : 264 |||! ! ! !.!!!.. ! !:!! :!:||| |||:!!|||!.!||||||! ArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuL 285218 : AGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGA : 285277 265 : rgThrLeu{As} >>>> Target Intron 1 >>>> {n}PheIleSerCysIl : 272 :!! !|||{..} 1411 bp {!}||||||||| || ysIleLeu{Gl}++ ++{y}PheIleSerGlnIl 285278 : AGATACTG{GG}gt.........................ag{T}TTTATATCGCAAAT : 286712 273 : eGluAspValMetPheLysIleTyrPheValGluMetPheArgSerThrMetAspIle : 291 ||||! :!!:!: !:!!|||! !|||||||||:!!.!! !!!!!|||:!!:!!||| eGluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsnIle 286713 : CGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATA : 286769 292 : CysValIleGlyTyrTyrIleLeuSer >>>> Target Intron 2 >>>> Gl : 301 ||| !!:!:|||||||||:!!|||!!! 80 bp || CysPheLeuGlyTyrTyrLeuLeuThr++ ++Gl 286770 : TGCTTTTTGGGATATTATTTACTGACGgt.........................agGA : 286879 302 : uTrpAlaAspGlnAspIleGlnAsnLeuIleThrTyrPheMetMetLeuIleSerIle : 320 ||||! !.!....!!:! ! !... !|||||||||! !! !:!!|||:!!|||.!! uTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerPhe 286880 : ATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTC : 286936 321 : CysPheAspIlePheValIleCysTyrIleSerGluIleLeuThrGluGln >>>> : 338 |||:!!:!!|||:!!:!!|||||||||.!!|||||||||:!!|||||| ThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286937 : ACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt..... : 286992 339 : Target Intron 3 >>>> CysGlnLysValGlyGluValValTyrMetThrAsn : 349 74 bp ||| !||||||||| ! !..!||||||! !:!! ++CysLeuLysValGlyLeuSerThrTyrMetIleAsp 286993 : ....................agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGAC : 287097 350 : TrpTyrTyrLeuProAsnLysValIleLeuAspLeuIleLeuIleIleAlaArgSerS : 369 |||||| !||||||...|||..! !! !! !||||||||||||.!!||| !|||! TrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerA 287098 : TGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGA : 287157 370 : erThrValValHisLeuThrAlaGlyLysPheIleGlnMetSerValTyrThrPheGl : 388 :!:!! !:!! ! |||||||||||||||.!!|||.!.:!:|||:!! !!:!||| ! snSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCy 287158 : ATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTG : 287214 389 : yAsnValLeuLysThrGlyPheAlaTyrLeuAsnMet : 400 !!:!||| !! ! !..!!!.:!!|||! !:!!:!! sSerValSerIleIleAsnLeuSerTyrTyrHisLeu 287215 : CAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 287252 vulgar: gi|350422517|ref|XP_003493188.1| 17 400 . KQ414889.1 284523 287252 + 548 M 57 171 G 0 3 M 46 138 G 0 9 M 134 402 G 0 3 M 12 36 S 0 2 5 0 2 I 0 1407 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 287252 548 + . gene_id 6 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284524 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 285287 . + . insertions 15 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286698 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284524 287252 548 + . alignment_id 6 ; Query gi|350422517|ref|XP_003493188.1| ; Align 284524 18 171 ; Align 284698 75 138 ; Align 284845 121 402 ; Align 285250 255 36 ; Align 286700 268 99 ; Align 286879 301 111 ; Align 287064 338 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 537 Query range: 3 -> 285 Target range: 236810 -> 237653 4 : GluAlaValIleValGluSerAspSerAsnSerAsnSerAspTyrSerLeuGlnLeuA : 23 :!!.!!|||:!!..!|||! !:!!! !!.!:!!!:!||||||||||||||||||! !| LysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpA 236811 : AAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGA : 236868 24 : snArgTrpPheLeuGlnSerIleGlyAlaTrpProSerSerAlaSerThrThrLysLe : 42 |||||||| :!!:!!|||||||||.!!||||||..!! !:!!||| !!.|| snArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSer------AsnLe 236869 : ATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCG------AACCT : 236919 43 : uGluLysIleValSerPheIleLeuAsnIleValCysLeuSerIleValIleLeuAla : 61 ||||!:!! !:!!||| |||||||||:!::!!|||! !!!! !:!!:!!!!!:!! uGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSer 236920 : CGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCG : 236976 62 : ValIleProSerLeuLeuLeuMetIleLeuGlyAspGluSerPheAsnPheLysLeuL : 81 :!!||||||!!!! !|||! !:!:!!:|||! ! ! ! !!!!||| !! |||:!!| IleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValL 236977 : ATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGA : 237036 82 : ysMetPheGlyTyrValSerHisTrpIlePheSerGlyIleAsnTyrThrAlaLeuLe : 100 ||!!:.!!|||! :!!|||||||||:!:|||!!! !|||!:!|||||| !||||| ysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLe 237037 : AAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTT : 237093 101 : uThrHisGlyLysAsnIleArgGlnCysIleGluHisIleGluAlaAspTrpArgThr : 119 | !!.. !!|||!.!||||||!!.! !.!!.!.|||!!:|||.!!|||||||||||| uLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThr 237094 : GCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACG : 237150 120 : ValThrArgGluGluAspLysAsnValMetLeuLysAsnAlaLysLeuGlyArgTyrI : 139 ..!||||||:::||| |||...|||||||||||| !!||||||!!!.!!|||||| ThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrA 237151 : ACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACG : 237210 140 : leAlaGlyPheSerValIlePheValGlnGlySerValLeuCysPhePhePheAlaAl : 158 ||| !! !!!!..!||||||:!!!!.|||.!!:!!||| ! !:!! ! !! !.! laAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetTh 237211 : CGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGAC : 237267 159 : aAlaLeuSerThrValGluMetGlnValGlyAsnGlu<->ArgIleLeuHisLeuLeu : 176 !|||! !!!!|||:!!! :!: !|||||||||:!! ! !||||||!.!:!!||| rAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLeuArgValLeu 237268 : AGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGCGTGCTG : 237324 177 : ProCysAlaValTyrLysLysLeuValAsnValAspAspSerLeuThrAsnGluIleM : 196 |||! !!:!!|||||| !|||:!! |||||| !:! !! !|||!!:|||: ProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnAspIleV 237325 : CCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGACATCG : 237384 197 : etLeuLeuLeuGlnLeuTrpSerThrValIleAlaAsnSerSerThrSerGlyIlePh : 215 !::!!|||! !|||!!! ||| ! !!|||||||||!:!|||.!!! !.!!:!!.! alValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSerValIl 237385 : TTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAGTGTTAT : 237441 216 : eGlyLeuSerAlaValLeuAlaAlaHisSerCysGlyGlnLeuAsnValIleMetVal : 234 ..!!|||!!!::!!.!|||.!!:!!|||:!!! !|||||||||!:!|||:!!|||:!! eSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValValMetLeu 237442 : AAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTTATGTTG : 237498 235 : TrpIleThrGluPheValAsnLysAlaArgGluArgThrLysThrGlyAsnPheIleG : 254 ! !||| !!!:||||||!:!:!!||||||...||| !||| !! !:!!||| !| SerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAspHisPheAspG 237499 : TCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATCATTTCGACG : 237558 255 : luIleGlyMetIleValGluArgHisLeuArgThrLeuAsnPheIleSerCysIleGl : 273 ||||| !! |||||||||..!|||||||||..!|||!!.! :!!!!!! :!:!! luIleProThrIleValGluGluHisLeuArgValLeuLys***ValCysLeuLeuAs 237559 : AAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAGTATGTTTGTTGGA : 237615 274 : uAspValMetPheLysIleTyrPheValGluMetPhe : 285 : :!!:!!.!.! ! ! |||:!! ! !||| pLeuIleLeuLeuMetGlyValPheLeu***SerPhe 237616 : TTTGATTTTGCTGATGGGTGTGTTTCTCTGATCGTTT : 237653 vulgar: gi|350422517|ref|XP_003493188.1| 3 285 . KQ414889.1 236810 237653 + 537 M 35 105 G 2 0 M 130 390 G 0 3 M 115 345 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236811 237653 537 + . gene_id 7 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236811 237653 . + . KQ414889.1 exonerate:protein2genome:local exon 236811 237653 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236811 237653 537 + . alignment_id 7 ; Query gi|350422517|ref|XP_003493188.1| ; Align 236811 4 105 ; Align 236916 41 390 ; Align 237309 171 345 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 494 Query range: 7 -> 339 Target range: 217144 -> 219445 8 : ValGluSerAspSerAsnSerAsnSerAspTyrSerLeuGlnLeuAsnArgTrpPheL : 27 ..!!!:! !!!: ......||| ::: |||:!!|||! !|||||||||!!.| ThrAspTyrGluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuL 217145 : ACCGACTACGAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGT : 217202 28 : euGlnSerIleGlyAlaTrpProSerSerAlaSerThrThrLysLeuGluLysIleVa : 46 ||:!! !!!!:||| !||||||!:!||| !!!!||||||!:!! !..!||||||:! euLysProMetGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLe 217203 : TGAAACCGATGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCT : 217259 47 : lSerPheIleLeuAsnIleValCysLeuSerIleValIleLeuAlaValIleProSer : 65 !! ! :!::!!||| !:!!|||! !.!!:!::!!! !!!! ! !!:!!|||!!! uTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCys 217260 : CTACAAACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGC : 217316 66 : LeuLeuLeuMetIleLeuGlyAspGluSerPheAsnPheLysLeuLysMetPheGlyT : 85 ! !:!!! !:!!.!!|||! !! !|||..!.!! !! !|||||||||:!!|||||| SerMetTyrValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyP 217317 : TCCATGTACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTC : 217376 86 : yrValSerHisTrpIlePheSerGlyIleAsnTyrThrAlaLeuLeuThrHisGlyLy : 104 :!!! ! !!! :!:.!.:!! !:!!!!.||| !:!!|||:!!..!||| ! roLeuIlePheCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAl 217377 : CGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGC : 217433 105 : sAsnIleArgGlnCysIleGluHisIleGluAlaAspTrpArgThrValThrArgGlu : 123 !:!!||||||:!!|||:!:..!...|||||| !|||||||||!.!|||! ! !!||| aAspIleArgGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGlu 217434 : GGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAG : 217490 124 : GluAspLysAsnValMetLeuLysAsnAlaLysLeuGlyArgTyrIleAlaGlyPheS : 143 :!!|||!:!.!.!.!|||:!! !||||||!!.!!!|||||| ! :!:!.! !.!!! LysAspArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuC 217491 : AAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCT : 217550 144 : erValIlePheValGlnGlySerValLeuCysPhePhePheAlaAlaAlaLeuSerTh : 162 !!..!.!!|||:!! ! .!!... ::: ::::::..!||| ! !!:!!|||.. ysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerVa 217551 : GTACCTTCTTCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGT : 217607 163 : rValGluMetGlnValGlyAsnGluArgIleLeuHisLeu<->LeuProCysAlaVal : 180 !! !..!!!:! ! !! !|||! !!.!:!! ! !:!! ||| !! ! !! !! lGlyArgIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPhe 217608 : GGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTT : 217664 181 : TyrLysLysLeuValAsnValAspAspSerLeuThrAsnGluIleMetLeuLeuLeuG : 200 ||| ! :!!:!!:!!..! ! !!!!!! !||||||||||||:!!!!!!!!|||| ThrLysTyrIleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuG 217665 : ACGAAGTATATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTC : 217724 201 : lnLeuTrpSerThrValIleAlaAsnSerSerThrSerGlyIlePheGlyLeuSerAl : 219 ||||| :!! !!.!:!: !:!!.!!! !||||||!.! !! !.!!|||:!!|| lnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAl 217725 : AATTGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGC : 217781 220 : aValLeuAlaAlaHisSerCysGlyGlnLeuAsnValIleMetValTrpIleThrGlu : 238 |!.!!!!|||!.!|||:!!|||||||||:!!.!.|||:!:||| !|||:!: !.!. aAlaPheAlaValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHis 217782 : AGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACAT : 217838 239 : PheValAsnLysAlaArgGluArgThrLysThrGlyAsnPheIleGluIleGlyMetI : 258 !!.:!!:!! ! !!!:! !!:! ! |||! !:!! ! ..!|||!.!! | LeuIleAspGlyArgAlaAspMetSerAspThrValAspGly---ArgIleAlaSerI 217839 : TTAATCGACGGTAGAGCGGATATGAGCGATACTGTGGATGGT---AGAATCGCGAGCA : 217895 259 : leValGluArgHisLeuArgThrLeu{As} >>>> Target Intron 1 >>>> : 267 |||||...!:!|||:!!|||! !|||{!!} 1229 bp leValSerGlnHisValArgIleLeu{Ly}++ + 217896 : TCGTCAGTCAACACGTTCGGATATTA{AA}gt.........................a : 219151 268 : {n}PheIleSerCysIleGluAspValMetPheLysIleTyrPheValGluMetPhe : 285 {.}|||::::!! !! !||| ..!:!: :!!|||! !|||!.!|||.!..!. +{s}PheLeuThrLeuThrGluArgThrLeuGlnGlnIleSerPheAlaGluPheLeu 219152 : g{a}tttttgaCGCTCACAGAGAGAACCCTCCAGCAAATCTCTTTCGCTGAATTTCTA : 219205 286 : ArgSerThrMetAspIleCysValIleGlyTyrTyrIleLeuSer >>>> Target : 301 !!!!!|||||||||||||||:!!:!!||||||||||||:!! ! 7 GlyCysThrMetAspIleCysLeuValGlyTyrTyrIleIleVal++ 219206 : GGATGCACCATGGACATATGTCTCGTTGGATATTACATTATCGTGgt........... : 219255 302 : Intron 2 >>>> GluTrpAlaAspGlnAspIleGlnAsnLeuIleThrTyrPhe : 314 6 bp |||||| !....!.|||:!! !!:! !:!:||||||.!! ++GluTrpLysSerAsnAspValThrSerAlaValThrTyrIle 219256 : ..............agGAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATC : 219368 315 : MetMetLeuIleSerIleCysPheAspIlePheValIleCysTyrIleSerGluIleL : 334 !!::!:|||||||||:!: |||:::||||||:::...|||||||||.!!||||||: IleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleV 219369 : ATTCTACTTATATCCCTcactttcaacattttcatattttgctaCATAGGAGAGATCG : 219428 335 : euThrGluGlnCysGln : 339 !!.!!|||||| ::: alAlaGluGlnValGlu 219429 : TTGCTGAACAggtagaa : 219445 vulgar: gi|350422517|ref|XP_003493188.1| 7 339 . KQ414889.1 217144 219445 + 494 M 168 504 G 0 3 M 77 231 G 1 0 M 13 39 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217145 219445 494 + . gene_id 8 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217145 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217145 217923 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219445 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219445 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217145 219445 494 + . alignment_id 8 ; Query gi|350422517|ref|XP_003493188.1| ; Align 217145 8 504 ; Align 217652 176 231 ; Align 217883 254 39 ; Align 219154 268 99 ; Align 219329 301 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 467 Query range: 10 -> 270 Target range: 232438 -> 233218 11 : AspSerAsnSerAsnSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuGlnSerI : 30 :!!:!!!.. !!:!!! !!!:||||||:!!|||:!!||||||||||||||| ! !!! AsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProM 232439 : AACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGA : 232496 31 : leGlyAlaTrpProSerSerAlaSerThrThrLysLeuGluLysIleValSerPheIl : 49 !:|||||||||||| !! !.!!..!|||:!!!:! !:!!:!!:!!:!!:!! :! etGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLe 232497 : TGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACT : 232553 50 : eLeuAsnIleValCysLeuSerIleValIleLeuAlaValIleProSerLeuLeuLeu : 68 :|||!..:!!..!|||! !|||:!::!!|||! !:!!:!!:!!|||!!!:!!|||!!! uLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPhe 232554 : GTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTC : 232610 69 : MetIleLeuGlyAspGluSerPheAsnPheLysLeuLysMetPheGlyTyrValSerH : 88 !!::!:!!!! !||| !|||.!..!. !:!:!!||| .!!||| !:!!|||| IleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerH 232611 : ATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTC : 232670 89 : isTrpIlePheSerGlyIleAsnTyrThrAlaLeuLeuThrHisGlyLysAsnIleAr : 107 ||!:::!:.!..!!! !:!:|||||| !..!||||||.!! ! !.!!!.:!!|||! isPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLe 232671 : ACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCT : 232727 108 : gGlnCysIleGluHisIleGluAlaAspTrpArgThrValThrArgGluGluAspLys : 126 ! ! |||:!:|||!!.:!::!! !|||||||||!.!|||! !!:! ! !!::: uTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArg 232728 : CTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGT : 232784 127 : AsnValMetLeuLysAsnAlaLysLeuGlyArgTyrIleAlaGlyPheSerValIleP : 146 :!!:!!|||||||||||||||||||||||||||! |||||| !!.!!:!!!.!.!!! AspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheC 232785 : GATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTT : 232844 147 : heValGlnGlySerValLeuCysPhePhePheAlaAlaAlaLeuSerThrValGluMe : 165 !:!!!!. !.!!||| !! ! ! .!.!.!.!!!.!||| !!! ! ! !.! ysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPh 232845 : GCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTT : 232901 166 : tGlnValGlyAsnGluArgIle<->LeuHisLeuLeuProCysAlaValTyrLysLys : 183 . ! ||||||||||||!!! ! :!!:!!! !|||||||||.!! !!|||! !||| eTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLys 232902 : CTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAG : 232958 184 : LeuValAsnValAspAspSerLeuThrAsnGluIleMetLeuLeuLeuGlnLeuTrpS : 203 |||:!!:!!..! !|||! !|||||||||||||||!!!:!!||||||! ! | LeuMetAspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuS 232959 : CTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCT : 233018 204 : erThrValIleAlaAsnSerSerThrSerGlyIlePheGlyLeuSerAlaValLeuAl : 222 || ! !!|||!.!|||||| !||| !||| !! !||||||.!!||||||||||| erGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAl 233019 : CCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGC : 233075 223 : aAlaHisSerCysGlyGlnLeuAsnValIleMetValTrpIleThrGluPheValAsn : 241 | !|||:!!||||||||||||||||||:!:||| ! :!: !!!:!!.|||:!! aMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAsp 233076 : GATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGAC : 233132 242 : LysAlaArgGluArgThrLysThrGlyAsnPheIleGluIleGlyMetIleValGluA : 261 ! ! !!:!!..! !!:!..!!.!.!. ! :!!:!!|||.!.|||||||||! AlaLysGlyGlnGluGluArgValAlaGln---ArgLysLeuGlyPheIleValGluH 233133 : GCGAAAGGGCAGGAGGAGAGAGTCGCGCAG---AGGAAGTTAGGTTTCATCGTGGAGC : 233189 262 : rgHisLeuArgThrLeuAsnPheIleSer : 270 .!|||||||||||||||!..!:!:!:||| isHisLeuArgThrLeuArgTyrLeuSer 233190 : ATCATTTGCGTACATTAAGGTATTTGTCT : 233218 vulgar: gi|350422517|ref|XP_003493188.1| 10 270 . KQ414889.1 232438 233218 + 467 M 162 486 G 0 3 M 79 237 G 1 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232439 233218 467 + . gene_id 9 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232439 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232439 233218 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 232439 233218 467 + . alignment_id 9 ; Query gi|350422517|ref|XP_003493188.1| ; Align 232439 11 486 ; Align 232928 173 237 ; Align 233165 253 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 387 Query range: 300 -> 405 Target range: 277371 -> 277842 301 : GluTrpAlaAspGlnAspIleGlnAsnLeuIleThrTyrPheMetMetLeuIleSerI : 320 ||||||:!!|||...|||:!!|||!..:!!! !|||:!!||||||!!:|||||||||! GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 321 : leCysPheAspIlePheValIleCysTyrIleSerGluIleLeuThrGluGln >>> : 338 !:||||||:::||||||..!:!!|||||||||.!!|||||||||||||||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 339 : > Target Intron 1 >>>> CysGlnLysValGlyGluValValTyrMetThrA : 349 72 bp |||:!!|||||||||||||||||||||||||||| ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 350 : snTrpTyrTyrLeuProAsnLysValIleLeuAspLeuIleLeuIleIleAlaArgSe : 368 |||||||||||||||||:!!|||! !||||||:!!|||:!!|||||||||:!!||||| snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 369 : rSerThrValValHisLeuThrAlaGlyLysPheIleGlnMetSerValTyrThrPhe : 387 |||| |||::: :::||||||||||||...|||||||||||||||||||||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 388 : GlyAsn >>>> Target Intron 2 >>>> ValLeuLysThrGlyPheAlaTy : 397 |||:!! 84 bp |||:!!|||||| !|||||||| GlyAsp++ ++ValIleLysThrThrPheAlaTy 277703 : GGCGATgt.........................agGTAATAAAAACCACTTTCgcgta : 277816 398 : rLeuAsnMetLeuGlnGlnMetThr : 405 |||||||:::|||:::|||! !||| rLeuAsnIleLeuArgGlnThrThr 277817 : tttaaatattctacgCCAAACGACG : 277842 vulgar: gi|350422517|ref|XP_003493188.1| 300 405 . KQ414889.1 277371 277842 + 387 M 37 111 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277842 387 + . gene_id 10 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277842 387 + . alignment_id 10 ; Query gi|350422517|ref|XP_003493188.1| ; Align 277372 301 111 ; Align 277555 338 156 ; Align 277795 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 385 Query range: 7 -> 272 Target range: 221348 -> 222143 8 : ValGluSerAspSerAsnSerAsnSerAspTyrSerLeuGlnLeuAsnArgTrpPheL : 27 ||||||! !|||! !!!.!!!||| ! ! ! |||:!!||||||!:!||||||.!!| ValGluTyrAspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleL 221349 : GTTGAATACGATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCT : 221406 28 : euGlnSerIleGlyAlaTrpProSerSerAlaSerThrThrLysLeuGluLysIleVa : 46 ||:!! !!||||||!.!||||||!:!||||||!:!! !:!!! !:!!|||!:! !:! euLysProIleGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLe 221407 : TGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCT : 221463 47 : lSerPheIleLeuAsnIleValCysLeuSerIleValIleLeuAlaValIleProSer : 65 !! !!:::!::!!|||:!!||||||! !|||:!::!!! !!! !:!!:!!|||!!! uTyrTrpLeuIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCys 221464 : CTACTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGC : 221520 66 : LeuLeuLeuMetIleLeuGlyAspGluSerPheAsnPheLysLeuLysMetPheGlyT : 85 !|||! !:!!||||||! !! |||..! !! !! !!:!:!!|||:!!!!.||| SerLeuTyrValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyP 221521 : AGCCTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTC : 221580 86 : yrValSerHisTrpIlePheSerGlyIleAsnTyrThrAlaLeuLeuThrHisGlyLy : 104 :!!||| !!! :!:.!.:!! !:!!!!.||| ! !|||:!! !:!!! !!! roLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAs 221581 : CGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAA : 221637 105 : sAsnIleArgGlnCysIleGluHisIleGluAlaAspTrpArgThrValThrArgGlu : 123 .:!!||||||:!!|||||||||!.!|||||| !||||||!:!!.!:!!||| !... nAspIleArgGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSer 221638 : CGACATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCC : 221694 124 : GluAspLysAsnValMetLeuLysAsnAlaLysLeuGlyArgTyrIleAlaGlyPheS : 143 :!!||||||:!!:!!|||:!!:!!||||||! !!!|||||| :!: ! !.!!! LysAspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleC 221695 : AAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCT : 221754 144 : erValIlePheValGlnGlySerValLeuCysPhePhePheAlaAlaAlaLeuSerTh : 162 !!..!.!!|||:!! ! .!!... ::: ::::::...||| ! !!!!!|||.. ysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerVa 221755 : GCACATTTTTCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGT : 221811 163 : rValGluMetGlnValGlyAsnGluArgIleLeuHisLeuLeuProCysAlaValTyr : 181 !! !:!!!!:! !.! !:!! ...::: :::! ! ! ! !!:! lGlyLysIleProAlaGlnAspValAsnValThrPheIleProMetValPheProPhe 221812 : GGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTC : 221868 182 : LysLys<->LeuValAsnValAspAspSerLeuThrAsnGluIleMetLeuLeuLeuG : 200 ..!!:! :!!|||:!!..! !!|||! !..!|||||||||:!!!!!! !|||| SerArgPheIleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuG 221869 : TCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTC : 221928 201 : lnLeuTrpSerThrValIleAlaAsnSerSerThrSerGlyIlePheGlyLeuSerAl : 219 ||:!! !:!! !!.!:!: !:!!|||! !||||||!.! !! !.!!||| !|| lnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAl 221929 : AAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGC : 221985 220 : aValLeuAlaAlaHisSerCysGlyGlnLeuAsnValIleMetValTrpIleThrGlu : 238 |:!!!!!|||!.!|||:!!|||||||||:!!.!.|||:!:||| !|||:!:! !.!. aMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHis 221986 : TATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACAT : 222042 239 : PheValAsnLysAlaArgGluArgThrLysThrGlyAsnPheIleGluIleGlyMetI : 258 !!.:!!||| ! !!!:! ! !!!.!.!! !:!! ! ..!|||!.!! !| LeuIleAsnGlyArgAlaAspMetCysAsnAsnValAsp---ArgArgIleAlaLysI 222043 : TTGATCAACGGCCGGGCGGATATGTGTAACAACGTGGAT---AGGAGAATAGCGAAGA : 222099 259 : leValGluArgHisLeuArgThrLeuAsnPheIleSerCysIle : 272 |||||.!.!:!|||:!!|||! !|||.!.!:!:!! !!|||||| leValAsnGlnHisValArgIleLeuGlnTyrValArgCysIle 222100 : TTGTGAATCAACACGTTCGAATATTGCAGTATGTACGTTGTATC : 222143 vulgar: gi|350422517|ref|XP_003493188.1| 7 272 . KQ414889.1 221348 222143 + 385 M 176 528 G 0 3 M 68 204 G 1 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221349 222143 385 + . gene_id 11 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221349 222143 . + . KQ414889.1 exonerate:protein2genome:local exon 221349 222143 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221349 222143 385 + . alignment_id 11 ; Query gi|350422517|ref|XP_003493188.1| ; Align 221349 8 528 ; Align 221880 184 204 ; Align 222084 253 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 363 Query range: 300 -> 405 Target range: 272836 -> 273302 301 : GluTrpAlaAspGlnAspIleGlnAsnLeuIleThrTyrPheMetMetLeuIleSerI : 320 ||||||.!!|||!!.|||.!!|||!:!|||! !||||||||||||!!:|||||||||! GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 321 : leCysPheAspIlePheValIleCysTyrIleSerGluIleLeuThrGluGln >>> : 338 !: |||:::||||||:::::!|||||||||.!!|||||||||||||||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 339 : > Target Intron 1 >>>> CysGlnLysValGlyGluValValTyrMetThrA : 349 70 bp |||:::|||:::|||||||||||||||||||||| ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 350 : snTrpTyrTyrLeuProAsnLysValIleLeuAspLeuIleLeuIleIleAlaArgSe : 368 |||||||||||||||||..!|||! !||||||||||||||||||||||||:!!|||!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 369 : rSerThrValValHisLeuThrAlaGlyLysPheIleGlnMetSerValTyrThrPhe : 387 !|||..!|||:!! ! :!!|||||||||!:!.!.:!!! |||||||||||||||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 388 : GlyAsn >>>> Target Intron 2 >>>> ValLeuLysThrGlyPheAlaTy : 397 |||:!! 81 bp |||:!!|||!:!!.!|||||||| GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 398 : rLeuAsnMetLeuGlnGlnMetThr : 405 |||||||||||||!:!|||! !||| rLeuAsnMetLeuArgGlnThrThr 273277 : CTTAAATATGCTACGACAAACGACA : 273302 vulgar: gi|350422517|ref|XP_003493188.1| 300 405 . KQ414889.1 272836 273302 + 363 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273302 363 + . gene_id 12 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273302 363 + . alignment_id 12 ; Query gi|350422517|ref|XP_003493188.1| ; Align 272837 301 111 ; Align 273018 338 156 ; Align 273255 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 357 Query range: 288 -> 405 Target range: 243568 -> 244951 289 : MetAspIleCysValIleGlyTyrTyrIleLeuSer >>>> Target Intron 1 : 301 :!:||| ! !:!!:!!||||||||||||!!!! ! 837 bp LeuAspAspIleLeuValGlyTyrTyrIlePheMet++ 243569 : CTAGACGATATTCTAGTTGGATATTATATATTCATGgt.................... : 243607 302 : >>>> GluTrpAlaAspGlnAspIleGlnAsnLeuIleThrTyrPheMetMetLeu : 317 |||||||||!!:...||| !:!!! !|||||||||||||||!!: ||| ++GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheIleAlaLeu 243608 : .....agGAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTATAGCACTC : 244490 318 : IleSerIleCysPheAspIlePheValIleCysTyrIleSerGluIleLeuThrGluG : 337 :!!:!!||| !! !:!!! !|||:!!:!!||||||||||||!!:! |||||||||| ValAlaIleValSerAsnThrPheIleLeuCysTyrIleSerAspArgLeuThrGluG 244491 : GTTGCTATTGTTTCTAATACATTTATACTCTGTTATATCAGCGACAGGCTGACAGAAC : 244550 338 : ln >>>> Target Intron 2 >>>> CysGlnLysValGlyGluValValTyr : 346 || 106 bp ||| !||||||||||||||||||||| ln++ ++CysLeuLysValGlyGluValValTyr 244551 : AGgt.........................agTGCTTGAAAGTTGGTGAAGTGGTTTAC : 244683 347 : MetThrAsnTrpTyrTyrLeuProAsnLysValIleLeuAspLeuIleLeuIleIleA : 366 ||||||:!!|||||||||||||||.!.!:! !|||||||||||||||||||||||| MetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleL 244684 : ATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTA : 244743 367 : laArgSerSerThrValValHisLeuThrAlaGlyLysPheIleGlnMetSerValTy : 385 !||||||!:!! !||||||.!.:!!|||||||||||| ! :!!!!.||||||:!!|| ysArgSerAsnMetValValGluIleThrAlaGlyLysValLeuHisMetSerLeuTy 244744 : AACGATCGAACATGGTCGTTGAAATCACCGCTGGAAAAGTATTACATATGTCGCTTTA : 244800 386 : rThrPheGlyAsn >>>> Target Intron 3 >>>> ValLeuLysThrGlyP : 395 ||||||||||:!! 89 bp |||:!!|||||||||| rThrPheGlyAsp++ ++ValValLysThrGlyP 244801 : CACGTTCGGCGATgt.........................agGTAGTAAAAACAGGAT : 244919 396 : heAlaTyrLeuAsnMetLeuGlnGlnMetThr : 405 |||||||||||||||||||| ||||||:!! heAlaTyrLeuAsnMetLeuCysGlnMetSer 244920 : TCGCCTACTTGAATATGCTTTGTCAAATGTCC : 244951 vulgar: gi|350422517|ref|XP_003493188.1| 288 405 . KQ414889.1 243568 244951 + 357 M 12 36 5 0 2 I 0 833 3 0 2 M 37 111 5 0 2 I 0 102 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 243569 244951 357 + . gene_id 13 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 243569 243604 . + . KQ414889.1 exonerate:protein2genome:local exon 243569 243604 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 243605 243606 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 243605 244441 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244440 244441 . + . intron_id 0 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 244442 244552 . + . KQ414889.1 exonerate:protein2genome:local exon 244442 244552 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244553 244554 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244553 244658 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 244657 244658 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244659 244814 . + . KQ414889.1 exonerate:protein2genome:local exon 244659 244814 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244815 244816 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244815 244903 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 244902 244903 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244904 244951 . + . KQ414889.1 exonerate:protein2genome:local exon 244904 244951 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 243569 244951 357 + . alignment_id 13 ; Query gi|350422517|ref|XP_003493188.1| ; Align 243569 289 36 ; Align 244442 301 111 ; Align 244659 338 156 ; Align 244904 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 346 Query range: 5 -> 271 Target range: 208176 -> 209570 6 : ValIleValGluSerAspSerAsnSerAsnSerAspTyrSerLeuGlnLeuAsnArgT : 25 :!!.!!:!!.!.!!!:!!! !!!.!:!:!! !..!!:!!:!:!!!::|||||| !| IlePheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValT 208177 : ATATTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGT : 208234 26 : rpPheLeuGlnSerIleGlyAlaTrpProSerSerAlaSerThrThrLysLeuGluLy : 44 || |||:!!! !||||||:!!||||||!!!||| !..! !:!! !||||||!! rpThrLeuLysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAs 208235 : GGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAA : 208291 45 : sIleValSerPheIleLeuAsnIleValCysLeuSerIleValIleLeuAlaValIle : 63 .! ! ! !.!!:!!||||||:!!:!! !!! !!!!:!::!! !!!! !|||||| nSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIle 208292 : CAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATA : 208348 64 : ProSerLeuLeuLeuMetIleLeuGlyAspGluSerPheAsnPheLysLeuLysMetP : 83 |||!!! !:!!!!! !||||||! !! !|||..!||| !! !:!!||||||!!:! ProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleC 208349 : CCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCT : 208408 84 : heGlyTyrValSerHisTrpIlePheSerGlyIleAsnTyrThrAlaLeuLeuThrHi : 102 !.!! !:!!||| !!::!!:.!.:!! !! !!.|||..! !:!! !..!!. ysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValAr 208409 : GTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCG : 208465 103 : sGlyLysAsnIleArgGlnCysIleGluHisIleGluAlaAspTrpArgThrValThr : 121 !! ! :!!||||||:!!|||:!!|||:!!:!!|||||||||||||||!.!||| ! gGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGlu 208466 : CGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAG : 208522 122 : ArgGluGluAspLysAsnValMetLeuLysAsnAlaLysLeuGlyArgTyrIleAlaG : 141 !.!|||||||||!:!!!.:!!|||||| ! ||||||!..!!!!.!||| ! :!: !! HisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleV 208523 : CACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCG : 208582 142 : lyPheSerValIlePheValGlnGlySerValLeuCysPhePhePheAlaAlaAlaLe : 160 !.!.!!!! ! !|||:!! ! |||.!.|||::: ::::::.!!||| ! !!|| alIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLe 208583 : TGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCT : 208639 161 : uSerThrValGlu<->MetGlnValGlyAsnGluArgIleLeuHisLeuLeuProCys : 178 |!!! !! !:!! :!::!!! !|||..!.!. !! ! !... !||| !! ! uThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyr 208640 : CACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTAT : 208696 179 : AlaValTyrLysLysLeuValAsnValAspAspSerLeuThrAsnGluIleMetLeuL : 198 !!||| !||| :!!:!!:!!||| !!|||! !..!|||||||||.!.! ! ProValProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrT 208697 : CCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATA : 208756 199 : euLeuGlnLeuTrpSerThrValIleAlaAsnSerSerThrSerGlyIlePheGlyLe : 217 !:!!||||||! !||| ! !!:!!|||:!!!:!! !||| !||| !! !||||| hrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLe 208757 : CGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTT : 208813 218 : uSerAlaValLeuAlaAlaHisSerCysGlyGlnLeuAsnValIleMetValTrpIle : 236 |:!!|||:!!|||||| !|||:!!||||||||||||.!.:!!:!:||| !|||!!: uAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMet 208814 : GGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATG : 208870 237 : ThrGluPheValAsnLysAlaArgGluArgThrLysThrGlyAsnPheIleGluIleG : 256 !:!!!!.|||:!! !.!|||||| ! !:!!! !..! ! ..!:!:! GluLysLeuValAsp---GlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuA 208871 : GAGAAGTTGGTCGAT---GGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGG : 208927 257 : lyMetIleValGluArgHisLeuArgThrLeu{As} >>>> Target Intron 1 : 267 .!! |||||||||!:!|||:!!|||..!:!!{||} 596 bp laAsnIleValGluGlnHisValArgValIle{As}++ 208928 : CTAATATCGTGGAGCAGCATGTTCGAGTGATC{AA}gt.................... : 208964 268 : >>>> {n}PheIleSerCys : 271 {|}|||||||||||| +-{n}PheIleSerCys 208965 : .....aa{t}tttatttcttgt : 209570 vulgar: gi|350422517|ref|XP_003493188.1| 5 271 . KQ414889.1 208176 209570 + 346 M 159 477 G 0 3 M 77 231 G 1 0 M 24 72 S 0 2 5 0 2 I 0 592 3 0 2 S 1 1 M 4 12 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208177 209570 346 + . gene_id 14 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208177 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208177 208961 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 209557 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 209556 209557 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 209558 209570 . + . KQ414889.1 exonerate:protein2genome:local exon 209558 209570 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208177 209570 346 + . alignment_id 14 ; Query gi|350422517|ref|XP_003493188.1| ; Align 208177 6 477 ; Align 208657 165 231 ; Align 208888 243 72 ; Align 209559 268 12 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 342 Query range: 300 -> 405 Target range: 238411 -> 238921 301 : GluTrpAlaAspGlnAspIleGlnAsnLeuIleThrTyrPheMetMetLeuIleSerI : 320 |||||||||!!:...||| !:!!! !|||||||||||||||:!: |||:!!:!!| GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheValAlaLeuValAlaI 238412 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTGTAGCACTCGTTGCTA : 238469 321 : leCysPheAspIlePheValIleCysTyrIleSerGluIleLeuThrGluGln >>> : 338 || !! !:!!! !|||:!!:!!|||||||||||||||! |||||||||||| leValSerAsnThrPheIleLeuCysTyrIleSerGluArgLeuThrGluGln++ 238470 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGAAAGGCTGACAGAACAGgt... : 238525 339 : > Target Intron 1 >>>> CysGlnLysValGlyGluValValTyrMetThrA : 349 106 bp ||| !|||||||||||||||||||||||||||: ++CysLeuLysValGlyGluValValTyrMetThrA 238526 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 238662 350 : snTrpTyrTyrLeuProAsnLysValIleLeuAspLeuIleLeuIleIleAlaArgSe : 368 !!|||||||||||||||.!.!:! !|||||||||||||||||||||||| !||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSe 238663 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATC : 238719 369 : rSerThrValValHisLeuThrAlaGlyLysPheIleGlnMetSerValTyrThrPhe : 387 |!:!..!|||||| ! :!!|||||||||||| ! :!!!!.||||||:!!||||||||| rAsnValValValLysValThrAlaGlyLysValLeuHisMetSerLeuTyrThrPhe 238720 : GAACGTGGTCGTTAAAGTCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTC : 238776 388 : GlyAsn >>>> Target Intron 2 >>>> ValLeuLysThrGlyPheAlaTy : 397 |||:!! 89 bp |||:!!||||||||||||||||| GlyAsp++ ++ValValLysThrGlyPheAlaTy 238777 : GGCGATgt.........................agGTAGTAAAAACAGGATTCGCCTA : 238895 398 : rLeuAsnMetLeuGlnGlnMetThr : 405 |:!!||||||||| ||||||:!! rMetAsnMetLeuCysGlnMetSer 238896 : CATGAATATGCTTTGTCAAATGTCC : 238921 vulgar: gi|350422517|ref|XP_003493188.1| 300 405 . KQ414889.1 238411 238921 + 342 M 37 111 5 0 2 I 0 102 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238412 238921 342 + . gene_id 15 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 238412 238522 . + . KQ414889.1 exonerate:protein2genome:local exon 238412 238522 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238523 238524 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238523 238628 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 238627 238628 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238629 238784 . + . KQ414889.1 exonerate:protein2genome:local exon 238629 238784 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238785 238786 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238785 238873 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 238872 238873 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238874 238921 . + . KQ414889.1 exonerate:protein2genome:local exon 238874 238921 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238412 238921 342 + . alignment_id 15 ; Query gi|350422517|ref|XP_003493188.1| ; Align 238412 301 111 ; Align 238629 338 156 ; Align 238874 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 333 Query range: 4 -> 272 Target range: 226891 -> 227695 5 : AlaValIleValGluSerAspSerAsnSerAsnSerAspTyrSerLeuGlnLeuAsnA : 24 :!!:!! ..!|||!:!|||! !.!...! !!! !:!! |||:!!|||||||||| SerLeuAlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnA 226892 : TCTCTCGCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATC : 226949 25 : rgTrpPheLeuGlnSerIleGlyAlaTrpProSerSerAlaSerThrThrLysLeuGl : 43 |||||.!.|||:!! !!:!!||| !|||||||||||| !!.!!:!:!!::!:!!! rgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGl 226950 : GTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGG : 227006 44 : uLysIleValSerPheIleLeuAsnIleValCysLeuSerIleValIleLeuAlaVal : 62 !!:! ! !!|||!:::!::!!..!.!!:!!|||! !:!!:!::!!! !!!!! !:!! yArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeu 227007 : AAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTG : 227063 63 : IleProSerLeuLeuLeuMetIleLeuGlyAspGluSerPheAsnPheLysLeuLysM : 82 :!! !!||| !|||! !:!!:!!|||! !! :!!.!! ! !! !! !||||||| ValSerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysM 227064 : GTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAA : 227123 83 : etPheGlyTyrValSerHisTrpIlePheSerGlyIleAsnTyrThrAlaLeuLeuTh : 101 ||.!!||| :!!||| !!:: .!.||| !:!!!!.|||:!! !||| ! etIleGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPh 227124 : TGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTT : 227180 102 : rHisGlyLysAsnIleArgGlnCysIleGluHisIleGluAlaAspTrpArgThrVal : 120 !|||! ! ! :!!|||! !:!!|||:!!|||!..|||:!! !||||||!:!!.!:!! eHisGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIle 227181 : CCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATC : 227237 121 : ThrArgGluGluAspLysAsnValMetLeuLysAsnAlaLysLeuGlyArgTyrIleA : 140 ! ! ! !||||||!:!|||||||||:!!! ! !!||| ! ! !|||||| ! :!: ArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuI 227238 : AGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGA : 227297 141 : laGlyPheSerValIlePheValGlnGlySerValLeuCysPhePhePheAlaAlaAl : 159 ! !.!!!!!..!.!!|||||| ...||| ::: |||:::.!!!.!!.! ! leThrIleCysThrPhePheValPheSerSerPheValPhePheTyrIleValValPr 227298 : TCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACC : 227354 160 : aLeuSerThrValGluMetGlnValGlyAsnGluArgIleLeuHisLeu<->LeuPro : 177 !:!!!:!.!!! !...:!: !..!! !:!!! !!.! ! !:!!:!! :!!||| oIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetPro 227355 : TATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCG : 227411 178 : CysAlaValTyrLysLysLeuValAsnValAspAspSerLeuThrAsnGluIleMetL : 197 ! ! !! !! |||! :!!!.!:!!||| ! !!|||! ! !|||||||||.!.! PheProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIlePheP 227412 : TTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCT : 227471 198 : euLeuLeuGlnLeuTrpSerThrValIleAlaAsnSerSerThrSerGlyIlePheGl : 216 !!! !:!!|||!!! !!! !:!!:!: !:!!.!! !||||||!.! !! !.! heSerValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSe 227472 : TTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAG : 227528 217 : yLeuSerAlaValLeuAlaAlaHisSerCysGlyGlnLeuAsnValIleMetValTrp : 235 !:!!:!!|||:!!||||||!.!|||:!!|||||||||:!!.!.|||:!::!! !||| rMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrp 227529 : TATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGG : 227585 236 : IleThrGluPheValAsnLysAlaArgGluArgThrLysThrGlyAsnPheIleGluI : 255 :!: !.!.!!.:!!:!! ! !!!:! !!:!|||||| !:!! !..!| LeuGlyHisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAsp---AspArgI 227586 : CTGGGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGAT---GATAGAA : 227642 256 : leGlyMetIleValGluArgHisLeuArgThrLeuAsnPheIleSerCysIle : 272 ||!.!! |||||| !.!|||:!!|||! !|||!!.! !:!!!!!|||||| leAlaSerIleValThrHisHisValArgIleLeuLysCysValThrCysIle 227643 : TCGCTAGCATCGTCACTCACCACGTTCGAATATTGAAGTGTGTAACGTGTATC : 227695 vulgar: gi|350422517|ref|XP_003493188.1| 4 272 . KQ414889.1 226891 227695 + 333 M 171 513 G 0 3 M 76 228 G 1 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226892 227695 333 + . gene_id 16 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226892 227695 . + . KQ414889.1 exonerate:protein2genome:local exon 226892 227695 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226892 227695 333 + . alignment_id 16 ; Query gi|350422517|ref|XP_003493188.1| ; Align 226892 5 513 ; Align 227408 176 228 ; Align 227636 253 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 295 Query range: 300 -> 390 Target range: 283096 -> 283438 301 : GluTrpAlaAspGlnAspIleGlnAsnLeuIleThrTyrPheMetMetLeuIleSerI : 320 ||||||:!!||| |||:!!|||!.!:!!! !|||:!!||||||!!:|||||||||! GluTrpSerAspGlyAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 283097 : GAATGGTCTGACGGCGATGTTCAGACTATGACTACGCATTTCATGATCCTTATATCCA : 283154 321 : leCysPheAspIlePheValIleCysTyrIleSerGluIleLeuThrGluGln >>> : 338 !:||||||:::||||||..!:!!! !||||||.!!:!!||||||||||||||| etCysPheAsnIlePheThrValTyrTyrIleGlyLysIleLeuThrGluGln++ 283155 : TgtgtttcaacatttttacAGTATACTATATCGGGAAAATACTAACTGAACAGgt... : 283210 339 : > Target Intron 1 >>>> CysGlnLysValGlyGluValValTyrMetThrA : 349 72 bp |||:!!|||||||||||||||||||||||||||| ++CysLysLysValGlyGluValValTyrMetThrA 283211 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 283313 350 : snTrpTyrTyrLeuProAsnLysValIleLeuAspLeuIleLeuIleIleAlaArgSe : 368 ||! !!:!|||||||||:!!|||! !||||||:!!|||:!!|||||||||:!!||||| sn***PheTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 283314 : ATTAGTTTTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 283370 369 : rSerThrValValHisLeuThrAlaGlyLysPheIleGlnMetSerValTyrThrPhe : 387 |||| |||::: :::||||||...|||...||||||||||||!.!||||||||| rSerLeuValIleLysIleThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPhe 283371 : TAGCctggtaattaaaattaccgctagcaaattaattcaaatGTCCGCGTACACGTTC : 283427 388 : GlyAsnVal : 390 ! !:!!||| AspAspVal 283428 : GACGATGTA : 283438 vulgar: gi|350422517|ref|XP_003493188.1| 300 390 . KQ414889.1 283096 283438 + 295 M 37 111 5 0 2 I 0 68 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283097 283438 295 + . gene_id 17 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 283097 283207 . + . KQ414889.1 exonerate:protein2genome:local exon 283097 283207 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 283208 283209 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 283208 283279 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 283278 283279 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 283280 283438 . + . KQ414889.1 exonerate:protein2genome:local exon 283280 283438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283097 283438 295 + . alignment_id 17 ; Query gi|350422517|ref|XP_003493188.1| ; Align 283097 301 111 ; Align 283280 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 279 Query range: 7 -> 266 Target range: 278546 -> 279338 8 : ValGluSerAspSerAsnSerAsnSerAspTyrSerLeuGlnLeuAsnArgTrpPheL : 27 ..!!!:||| !!!|||!!!:!!!!! ||||||:!!|||:!!||||||||||||| ThrAspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheL 278547 : ACCGATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTC : 278604 28 : euGlnSerIleGlyAlaTrpProSerSerAlaSerThrThrLysLeuGluLysIleVa : 46 ||:!! !!||||||!.!|||||| !||| !!!!..!|||! |||||||||||| euLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSe 278605 : TCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAG : 278661 47 : lSerPheIleLeuAsnIleValCysLeuSerIleValIleLeuAlaValIleProSer : 65 !||| ! :!!||| :!!:!! !!! !! !:!::!! !!!! !:!!:!!|||!!! rSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCys 278662 : TTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGC : 278718 66 : LeuLeuLeuMetIleLeuGlyAspGlu<->SerPheAsnPheLysLeuLysMetPheG : 84 !|||! !! :!:|||! ! ! ..!.!!:!! |||:!!||||||.!!| AlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleG 278719 : GCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCG : 278778 85 : lyTyrValSerHisTrpIlePheSerGlyIleAsnTyrThrAlaLeuLeuThrHisGl : 103 || !:!!||| !!! ! .!.:!! !|||!!.||| ! !|||:!!:!!!.!|| lyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGl 278779 : GTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGG : 278835 104 : yLysAsnIleArgGlnCysIleGluHisIleGluAlaAspTrpArg<-><-><->Thr : 119 | !!.||| !!:!!|||:!:.!. !!|||....!!|||||| ! :!! yGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSer 278836 : CGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCG : 278892 120 : ValThrArgGluGluAspLysAsnValMetLeuLysAsnAlaLysLeuGlyArgTyrI : 139 ! :::||||||::::::...:::||| ! ! !:!|||!:!:!!||||||! !: TyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerL 278893 : TATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTT : 278952 140 : leAlaGlyPheSerValIlePheValGlnGlySerValLeuCysPhePhePheAlaAl : 158 !:||| !||||||!.! !|||:!! ! ..!.!!! !:!!! !!:! ! !!.! euAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMe 278953 : TGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGAT : 279009 159 : aAlaLeuSerThrValGluMetGlnValGlyAsnGluArgIleLeuHisLeuLeuPro : 177 ! !!|||! !.!!|||...! !:!!:!! !:!!.!...!! :!!...! !! ! !! tProLeuPheAlaValArgThrGluIleIleAspAsnGluThrValArgSerGlnAla 279010 : GCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCG : 279066 178 : CysAlaValTyrLysLysLeuValAsnValAspAspSerLeuThrAsnGluIleMetL : 197 ! ! !!:!!|||::: |||:!!:!! ! ! !|||! !:!! !||||||:!!! PheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValG 279067 : TTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGC : 279126 198 : euLeuLeuGlnLeuTrpSerThrValIleAlaAsnSerSerThrSerGlyIlePheGl : 216 !!!!:!!|||! !! !:!!.!! !!:!! ! !!||| !||| !||| !! !.! lnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSe 279127 : AATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAG : 279183 217 : yLeuSerAlaValLeuAlaAlaHisSerCysGlyGlnLeuAsnValIleMetValTrp : 235 !|||! !||||||!!!!.! !||| !|||||||||!!!!..:!!:!!:!!..! ! rLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLys 279184 : CTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAG : 279240 236 : IleThrGluPheValAsnLysAlaArgGluArgThrLysThrGlyAsnPheIleGlu< : 255 :!: !:!!.!!:!!:!! !!.!!:!! !|||! !!.. !.!!!.. ! !:!! LeuAspLysLeuIleAspGlyValLysGlyArgLysSerLeuSerThrHisGluGlnA 279241 : CTGGATAAGCTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAAC : 279300 256 : ->IleGlyMetIleValGluArgHisLeuArgThrLeu : 266 :!:||| |||:!!|||!.!||||||!:!! !||| rgLeuGlyAspIleIleGluHisHisLeuLysIleLeu 279301 : GACTGGGAGATATCATCGAGCATCATCTGAAGATACTG : 279338 vulgar: gi|350422517|ref|XP_003493188.1| 7 266 . KQ414889.1 278546 279338 + 279 M 67 201 G 0 3 M 44 132 G 0 9 M 136 408 G 0 3 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278547 279338 279 + . gene_id 18 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278547 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278547 279338 . + . insertions 15 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278547 279338 279 + . alignment_id 18 ; Query gi|350422517|ref|XP_003493188.1| ; Align 278547 8 201 ; Align 278751 75 132 ; Align 278892 119 408 ; Align 279303 255 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 225 Query range: 296 -> 390 Target range: 305088 -> 305783 297 : TyrIleLeuSerGluTrpAlaAspGlnAspIleGlnAsnLeuIleThrTyrPheMetM : 316 |||::: ..!!!:|||! !..!...:!!! ! !:!|||! !|||||| :!!: TyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValL 305089 : tatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGT : 305146 317 : etLeuIleSerIleCysPheAspIlePheValIleCysTyrIleSerGluIleLeuTh : 335 !:|||||||||:!! |||:!!||||||:!!:!!|||||||||.!!|||||||||! euLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMe 305147 : TACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTAT : 305203 336 : rGluGln >>>> Target Intron 1 >>>> CysGlnLysValGlyGluValV : 345 !|||:!! 413 bp !!...!..|||||| ! ! tGluLys++ ++SerSerSerValGlyLeuSerC 305204 : GGAAAAGgt.........................agAGCAGTAGCGTTGGATTATCCT : 305646 346 : alTyrMetThrAsnTrpTyrTyrLeuProAsnLysValIleLeuAspLeuIleLeuIl : 364 !!:!|||! !!:!||||||:!!||||||!.!|||..!|||! !! !||||||||||| ysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleLeuIl 305647 : GTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTTTAAT : 305703 365 : eIleAlaArgSerSerThrValValHisLeuThrAlaGlyLysPheIleGlnMetSer : 383 |||||||! !||||||!.! !!.! ! :!!!:!||||||||| ! :!!.!.:!:||| eIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysValValAspLeuSer 305704 : CATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTATCT : 305760 384 : ValTyrThrPheGlyAsnVal : 390 :!!! !||||||||||||||| LeuSerThrPheGlyAsnVal 305761 : TTATCCACATTTGGAAACGTG : 305783 vulgar: gi|350422517|ref|XP_003493188.1| 296 390 . KQ414889.1 305088 305783 + 225 M 41 123 5 0 2 I 0 409 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305089 305783 225 + . gene_id 19 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305089 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305089 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305089 305783 225 + . alignment_id 19 ; Query gi|350422517|ref|XP_003493188.1| ; Align 305089 297 123 ; Align 305625 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 223 Query range: 334 -> 402 Target range: 234979 -> 235254 335 : ThrGluGlnCysGlnLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuP : 354 |||:!!|||||| |||||||||||| !||||||||||||.!.|||||| |||| ThrGlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuP 234980 : ACTCAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTAC : 235037 355 : roAsnLysValIleLeuAspLeuIleLeuIleIleAlaArgSerSerThrValValHi : 373 ||:!!|||..! !|||! !|||:!!:!!||||||:!!|||||||||! !|||:!! ! roHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLy 235038 : CTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAA : 235094 374 : sLeuThrAlaGlyLysPheIleGlnMetSerValTyrThrPheGlyAsn >>>> Ta : 390 :!!|||||||||||||||:!!|||||||||||| |||||||||:!! sIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAsp++ 235095 : AATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATgt....... : 235147 391 : rget Intron 1 >>>> ValLeuLysThrGlyPheAlaTyrLeuAsnMetLeuGl : 402 71 bp |||!!!|||.!!..!|||||||||!!!||||||:!!!: ++ValPheLysAlaSerPheAlaTyrPheAsnMetIleAr 235148 : ..................agGTATTTAAGGCGTCTTTCGCCTACTTCAACATGATCCG : 235252 403 : n : 402 : g 235253 : C : 235254 vulgar: gi|350422517|ref|XP_003493188.1| 334 402 . KQ414889.1 234979 235254 + 223 M 55 165 5 0 2 I 0 67 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234980 235254 223 + . gene_id 20 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234980 235144 . + . KQ414889.1 exonerate:protein2genome:local exon 234980 235144 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 235145 235146 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 235145 235215 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 235214 235215 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 235216 235254 . + . KQ414889.1 exonerate:protein2genome:local exon 235216 235254 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234980 235254 223 + . alignment_id 20 ; Query gi|350422517|ref|XP_003493188.1| ; Align 234980 335 165 ; Align 235216 390 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 210 Query range: 336 -> 393 Target range: 254271 -> 254442 337 : GlnCysGlnLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAsnL : 356 |||||| !|||||||||||||||||||||||||||:!!|||||||||||||||.!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 357 : ysValIleLeuAspLeuIleLeuIleIleAlaArgSerSerThrValValHisLeuTh : 375 :! !||||||||||||||||||||||||.!!||||||!:!..!||||||.!.:!!|| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 376 : rAlaGlyLysPheIleGlnMetSerValTyrThrPheGlyAsnValLeuLysThr : 393 ||||||||||.........||||||:!!||||||||||||:!!||| !:!!||| rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThr 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 254442 vulgar: gi|350422517|ref|XP_003493188.1| 336 393 . KQ414889.1 254271 254442 + 210 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254442 210 + . gene_id 21 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254442 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254442 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254442 210 + . alignment_id 21 ; Query gi|350422517|ref|XP_003493188.1| ; Align 254272 337 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 201 Query range: 336 -> 390 Target range: 264723 -> 264885 337 : GlnCysGlnLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAsnL : 356 ||||||:!!||||||||||||||||||||||||:!!|||||||||||||||||| !!| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 357 : ysValIleLeuAspLeuIleLeuIleIleAlaArgSerSerThrValValHisLeuTh : 375 ||! !|||||||||||||||||||||||| !|||||||||..!||| !! ! !!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 376 : rAlaGlyLysPheIleGlnMetSerValTyrThrPheGlyAsnVal : 390 ||||||||||.!.:!!!!.||||||:!!|||||||||.!!:!!||| rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: gi|350422517|ref|XP_003493188.1| 336 390 . KQ414889.1 264723 264885 + 201 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264885 201 + . gene_id 22 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264885 201 + . alignment_id 22 ; Query gi|350422517|ref|XP_003493188.1| ; Align 264724 337 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 198 Query range: 300 -> 399 Target range: 228247 -> 230433 301 : GluTrpAlaAspGlnAspIleGlnAsnLeuIleThrTyrPheMetMetLeuIleSerI : 320 |||||| ! :!!!!::!! ! ! !:!!||||||! !:!:|||:!!|||. GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerP 228248 : GAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCT : 228305 321 : leCysPheAspIlePheValIleCysTyrIleSerGluIleLeuThrGluGln >>> : 338 !! |||:::||||||:::...|||||||||.!!||||||:!!.!!|||!!. heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluHis++ 228306 : TTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACgt... : 228361 339 : > Target Intron 1 >>>> CysGlnLysValGlyGluValValTyrMetThrA : 349 1889 bp |||::!|||||||||||| ! !||||||! !. ++CysArgLysValGlyGluLysSerTyrMetIleG 228362 : ......................agTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCG : 230281 350 : snTrpTyrTyrLeuProAsnLysValIleLeuAspLeuIleLeuIleIleAlaArgSe : 368 !.|||||| ||| !!...!!. !! ||| !! !|||||||||||||||! !|| luTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 230282 : AATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTC : 230338 369 : rSerThrValValHisLeuThrAlaGlyLysPheIleGlnMetSerValTyrThrPhe : 387 |!:! ! !..! ! !!!|||||||||!!..!.:!!:!!:!:|||||| !!|||||| rAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnThrPhe 230339 : CAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACACTTTC : 230395 388 : GlyAsnValLeuLysThrGlyPheAlaTyrLeuAsn : 399 .!!:!!||| !! ! ! !! !!.!||| !||| SerAspValSerIleIlePheSerValTyrThrAsn 230396 : AGCGACGTAAGTATCATATTCTCTGTTTACACGAAT : 230433 vulgar: gi|350422517|ref|XP_003493188.1| 300 399 . KQ414889.1 228247 230433 + 198 M 37 111 5 0 2 I 0 1885 3 0 2 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228248 230433 198 + . gene_id 23 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228248 230433 198 + . alignment_id 23 ; Query gi|350422517|ref|XP_003493188.1| ; Align 228248 301 111 ; Align 230248 338 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 186 Query range: 300 -> 400 Target range: 280091 -> 280465 301 : GluTrpAlaAspGlnAspIleGlnAsnLeuIleThrTyrPheMetMetLeuIleSerI : 320 ||||||! !.!..!.||| ! !... !.!!||||||!!.|||.!.|||||||||: GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerL 280092 : GAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTT : 280149 321 : leCysPheAspIlePheValIleCysTyrIleSerGluIleLeuThrGlu{G} >>> : 337 !! |||:!!:!!|||:!!:!!|||||||||.!!|||||||||:!!|||{|} euThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGlu{G}-- 280150 : TAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAA{C}ag... : 280203 338 : > Target Intron 1 >>>> {ln}CysGlnLysValGlyGluValValTyrMet : 347 74 bp {||}||| !|||||||||! ! !..!|||||| +-{ln}CysLeuLysValGlyValSerThrTyrMet 280204 : ......................at{AG}TGCTTAAAAGTCGGCGTGTCAACTTACATG : 280304 348 : ThrAsnTrpTyrTyrLeuProAsnLysValIleLeuAspLeuIleLeuIleIleAlaA : 367 ! !:!!|||||| !||||||...||| ! !! !! !||||||||||||.!!||| IleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaV 280305 : ATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCG : 280364 368 : rgSerSerThrValValHisLeuThrAlaGlyLysPheIleGlnMetSerValTyrTh : 386 !|||!:!:!! !:!! ! |||||||||||||||.!!|||.!.:!:|||:!! !!: alSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSe 280365 : TGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAG : 280421 387 : rPheGlyAsnValLeuLysThrGlyPheAlaTyrLeuAsnMet : 400 !||| !!!:!||| !! ! !..!!!.:!!|||! !:!!:!! rPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280422 : CTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: gi|350422517|ref|XP_003493188.1| 300 400 . KQ414889.1 280091 280465 + 186 M 36 108 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280092 280465 186 + . gene_id 24 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280092 280200 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280200 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280201 280202 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local intron 280201 280274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280273 280274 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 280275 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280275 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280092 280465 186 + . alignment_id 24 ; Query gi|350422517|ref|XP_003493188.1| ; Align 280092 301 108 ; Align 280277 338 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 184 Query range: 18 -> 196 Target range: 294690 -> 295227 19 : SerLeuGlnLeuAsnArgTrpPheLeuGlnSerIleGlyAlaTrpProSerSerAlaS : 38 ||||||:!!! ! !||| !!.!.|||:!! !!|||||| !|||||| !! ! !| SerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrS 294691 : AGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACA : 294748 39 : er<->ThrThrLysLeuGluLysIleValSerPheIleLeuAsnIleValCysLeuSe : 56 || |||!:!||||||.!.|||:!!:!!|||.!.||||||! ! !||| !! erHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLe 294749 : GTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTT : 294805 57 : rIleValIleLeuAlaValIleProSerLeuLeuLeuMetIleLeuGlyAspGluSer : 75 !! !|||:!:!!!!.!:!!:!:|||!!! !! !!!! :!!!!! !! :::::: uThrValLeuPheValLeuValProCysGlyTyrPheCysValPheHisValLysAsn 294806 : GACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaac : 294862 76 : PheAsnPheLysLeuLysMetPheGlyTyrValSerHisTrpIlePheSerGlyIleA : 95 ......|||:!!|||:!:.!.||| ||| !:!!! !!:.!!||| !:!!! ValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuA 294863 : gtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCA : 294922 96 : snTyrThrAlaLeuLeuThrHisGlyLysAsnIleArgGlnCysIleGluHisIleGl : 114 ..|||!:!..!|||:!! ! ! ! .!!!:!!!.||||||||| !!||||| rgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCysIleGluAspIleGl 294923 : GGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGA : 294979 115 : uAlaAspTrpArgThrValThrArgGluGluAspLysAsnValMetLeuLysAsnAla : 133 | !||||||!:! !:!! !!.! !||| !!::! :!!|||:!!||||||||| uAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIleMetIleLysAsnAla 294980 : GAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCG : 295036 134 : LysLeuGlyArgTyrIleAlaGlyPheSerValIlePheValGlnGlySerValLeuC : 153 ! !:!! !!:! !!:.!!! ! !! !..!|||.!.:!! ! .!!|||!.!:!!! MetValThrGlnArgMetThrValAlaPheThrIleIleIleTyrSerSerAlaValS 295037 : ATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGT : 295096 154 : ysPhePhePheAlaAlaAlaLeuSerThrValGluMetGlnValGlyAsnGluArgIl : 172 !:! ! ! !!.. ... ::: :!!:!! ! !!!..!.!.!! erTyrHisAlaIleValProPhePheSerAsnAlaLeuGluAsnLysLysAsnAsnTh 295097 : CGTATCACGCCATTGtgccatttttttcaaacgctTTGGAGAACAAGAAGAATAATAC : 295153 173 : eLeuHisLeuLeuProCysAlaValTyrLysLysLeuValAsnValAspAspSerLeu : 191 :!!!.! !|||||| ! !!! !|||:!! !!!!|||:!!!.! !!..!|||! ! rIleArgAlaLeuProIleProGlyTyrGluLeuPheValAspAlaTyrSerSerPro 295154 : GATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGTCCT : 295210 192 : ThrAsnGluIleMet : 196 ||| !!||||||!!: ThrTyrGluIleIle 295211 : ACCTACGAGATCATA : 295227 vulgar: gi|350422517|ref|XP_003493188.1| 18 196 . KQ414889.1 294690 295227 + 184 M 20 60 G 0 3 M 158 474 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294691 295227 184 + . gene_id 25 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294691 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294691 295227 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294691 295227 184 + . alignment_id 25 ; Query gi|350422517|ref|XP_003493188.1| ; Align 294691 19 60 ; Align 294754 39 474 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 176 Query range: 266 -> 340 Target range: 263671 -> 264657 267 : AsnPheIleSerCysIleGluAspValMetPheLysIleTyrPheValGluMetPheA : 286 !:!||||||..! !!|||:!!:!!|||||| !! !|||! !|||||||||:!:|||! SerPheIleAspArgIleLysAsnValMetSerThrIleCysPheValGluLeuPheL 263672 : AGTTTCATAGATCGTATTAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCA : 263729 287 : rgSerThrMetAspIleCys{Va} >>>> Target Intron 1 >>>> {l}Il : 294 :!:!!|||:!!|||||||||{:!} 764 bp {!}|| ysAlaThrLeuAspIleCys{Il}+- +-{e}Il 263730 : AGGCTACGCTGGATATATGC{AT}gc.........................aa{T}AT : 264517 295 : eGlyTyrTyrIleLeuSerGluTrpAlaAspGlnAspIleGlnAsnLeuIleThrTyr : 313 | ! ! !!:!!!!!..!||||||! !..!!!.||||||||||||||| !|||||| eThrIleAspValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyr 264518 : AACAATTGACGTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATAT : 264574 314 : PheMetMetLeuIleSerIleCysPheAspIlePheValIleCysTyrIleSerGluI : 333 ||||||!!:|||||||||!!:||| !:!!||||||:!!!!:|||||||||.!!|||| PheMetIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluI 264575 : TTCATGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGA : 264634 334 : leLeuThrGluGlnCysGlnLys : 340 |||||||||||||| ||| leLeuThrGluGlnValIleLys 264635 : TATTGACTGAGcaggtaattaaa : 264657 vulgar: gi|350422517|ref|XP_003493188.1| 266 340 . KQ414889.1 263671 264657 + 176 M 26 78 S 0 2 5 0 2 I 0 760 3 0 2 S 1 1 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 263672 264657 176 + . gene_id 26 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 263672 263751 . + . KQ414889.1 exonerate:protein2genome:local exon 263672 263751 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263752 263753 . + . intron_id 1 ; splice_site "GC" KQ414889.1 exonerate:protein2genome:local intron 263752 264515 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264514 264515 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 264516 264657 . + . KQ414889.1 exonerate:protein2genome:local exon 264516 264657 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 263672 264657 176 + . alignment_id 26 ; Query gi|350422517|ref|XP_003493188.1| ; Align 263672 267 78 ; Align 264517 294 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 300 -> 390 Target range: 206050 -> 206401 301 : GluTrpAlaAspGlnAspIleGlnAsnLeuIleThrTyrPheMetMetLeuIleSerI : 320 ||||||! !:!!.!.:!!! ! ! :!!|||..!|||.!!! !:!!! !|||||| GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 321 : leCysPheAspIlePheValIleCysTyrIleSerGluIleLeuThrGluGln >>> : 338 ! ||| !:!!|||:!!:!!|||||||||.!!:!!:!!|||! !!!:||| ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 339 : > Target Intron 1 >>>> CysGlnLysValGlyGluValValTyrMetThrA : 349 81 bp !!!. |||||| !..! !! !! !..!| ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 350 : snTrpTyrTyrLeuProAsnLysValIleLeuAspLeuIleLeuIleIleAlaArgSe : 368 |||||||| !|||||||||!:! ! ! !..!:!!|||||||||||||||! !|| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 369 : rSerThrValValHisLeuThrAlaGlyLysPheIleGlnMetSerValTyrThrPhe : 387 |!:! ! !:!! ! |||||||||||||||.!..!!:!!||||||:!! !!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 388 : GlyAsnVal : 390 !:!!||| ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: gi|350422517|ref|XP_003493188.1| 300 390 . KQ414889.1 206050 206401 + 166 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 166 + . gene_id 27 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 166 + . alignment_id 27 ; Query gi|350422517|ref|XP_003493188.1| ; Align 206051 301 111 ; Align 206243 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 17 -> 116 Target range: 299689 -> 299989 18 : TyrSerLeuGlnLeuAsnArgTrpPheLeuGlnSerIleGlyAlaTrpPro<->SerS : 36 |||!!!||||||:!! !!:!|||!!.|||:!! !!||||||!.!|||! ! !. TyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpArgLeuLeuA 299690 : TACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGCGATTGCTAG : 299747 37 : erAlaSerThrThrLysLeuGluLysIleValSerPheIleLeuAsnIleValCysLe : 55 .! ! !!:!!!:!||||||||| ! :!!||||||.!!:!!|||! ! !:!!|||!! spGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMetThrIleCysPh 299748 : ATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATGACAATATGCTT : 299804 56 : uSerIleValIleLeuAlaValIleProSerLeuLeuLeuMetIleLeuGlyAspGlu : 74 !|||! !:!!.!!!!! !|||:!:|||||| !! !! !!!:.!!!!!!.!!!::!! eSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePhePheAlaGluLys 299805 : CTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCTTCGCGGAGAAA : 299861 75 : SerPheAsnPheLysLeuLysMetPheGlyTyrValSerHisTrpIlePheSerGlyI : 94 |||.!.:!! !!|||:!!|||:!:|||||| |||.!! !!! :!!! !||| !: SerIleHisValLysValLysValPheGlyProValGlyPheCysLeuSerSerIleV 299862 : AGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCATCG : 299921 95 : leAsnTyrThrAlaLeuLeuThrHisGlyLysAsnIleArgGlnCysIleGluHisIl : 113 !!!!.||| ! !|||! ! !:!!||| .!!..!!:!||||||:!!|||:! alLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCysIleGlnHisVa 299922 : TCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGCATCCAACACGT : 299978 114 : eGluAlaAsp : 116 !||| !||| lGluArgAsp 299979 : CGAGAGAGAC : 299989 vulgar: gi|350422517|ref|XP_003493188.1| 17 116 . KQ414889.1 299689 299989 + 160 M 17 51 G 0 3 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299690 299989 160 + . gene_id 28 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299690 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299690 299989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299690 299989 160 + . alignment_id 28 ; Query gi|350422517|ref|XP_003493188.1| ; Align 299690 18 51 ; Align 299744 35 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 332 -> 390 Target range: 214848 -> 215022 333 : IleLeuThrGluGlnCysGlnLysValGlyGluValValTyrMetThrAsnTrpTyrT : 352 |||:!! !:!!||||||:!!||||||||||||||| !||||||! !.!.|||||| IleMetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrA 214849 : ATTATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACC : 214906 353 : yrLeuProAsnLysValIleLeuAspLeuIleLeuIleIleAlaArgSerSerThrVa : 371 ||||||..!!!. !! ||| !! !|||||||||!!:|||! !|||!:!:!! rgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSe 214907 : GATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATC : 214963 372 : lValHisLeuThrAlaGlyLysPheIleGlnMetSerValTyrThrPheGlyAsnVal : 390 !||| ! !!!|||||||||!!..!.:!!:!!:!!|||:!! !||||||.!!!:!||| rValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214964 : CGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215020 vulgar: gi|350422517|ref|XP_003493188.1| 332 390 . KQ414889.1 214848 215022 + 143 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214849 215022 143 + . gene_id 29 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214849 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214849 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214849 215022 143 + . alignment_id 29 ; Query gi|350422517|ref|XP_003493188.1| ; Align 214849 333 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 328 -> 390 Target range: 224472 -> 224658 329 : TyrIleSerGluIleLeuThrGluGlnCysGlnLysValGlyGluValValTyrMetT : 348 |||.!!! !..!:!!!!! ! ||||||:::|||:::|||::!||| !||||||! TyrPheLeuSerLeuPhePheProGlnCysGluLysIleGlyGlnValSerTyrMetI 224473 : TATTTTTTATCGCTATTTTTTCCtcagtgtgaaaaaattggacaAGTGTCGTACATGA : 224530 349 : hrAsnTrpTyrTyrLeuProAsnLysValIleLeuAspLeuIleLeuIleIleAlaAr : 367 !:!!|||||| ||| !!...!!. !! !||| !! !|||||||||||||||! leAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMe 224531 : TCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGAT : 224587 368 : gSerSerThrValValHisLeuThrAlaGlyLysPheIleGlnMetSerValTyrThr : 386 !|||!:!:!! !:!! ! ||||||||||||!!..!.:!!:!!:!!!!!:!! !||| tSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThr 224588 : GTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACT : 224644 387 : PheGlyAsnVal : 390 ||||||:!!||| PheGlyAspVal 224645 : TTCGGTGACGTA : 224658 vulgar: gi|350422517|ref|XP_003493188.1| 328 390 . KQ414889.1 224472 224658 + 135 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224473 224658 135 + . gene_id 30 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224473 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224473 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224473 224658 135 + . alignment_id 30 ; Query gi|350422517|ref|XP_003493188.1| ; Align 224473 329 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 276 -> 352 Target range: 301614 -> 301842 277 : PheLysIleTyrPheValGluMetPheArgSerThrMetAspIleCysValIleGlyT : 296 ||| ! :!!! ! ||| |||...||||||:!::!! ! !!:!! !! PheHisLeuCysAlaValIleLysPheGluSerThrLeuAsnAlaLysPheLeuArgV 301615 : TTTCATCTCTGCgctgtaattaaatttgaatctACTTTAAATGCAAAGTTTTTACGAG : 301672 297 : yrTyrIleLeuSerGluTrpAlaAspGlnAspIleGlnAsnLeuIleThrTyrPheMe : 315 ! !!!!! !|||||| !:!!...|||! !:!!:!:|||!:!|||! alIle***Phe***GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheTh 301673 : TAATTTGATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCAC : 301729 316 : tMetLeuIleSerIleCysPheAspIlePheValIleCysTyrIleSerGluIleLeu : 334 :!!|||! |||.!! !|||:!!||||||:!!.!!|||||||||.!!||||||||| rLeuLeuThrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeu 301730 : TCTGTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTT : 301786 335 : ThrGluGlnCysGlnLysValGlyGluValValTyrMetThrAsnTrpTyrTyr : 352 :!!|||||| ! ! !.!!..! :::... ::: !|||!:! SerGluGlnValLeuThrTyrSerArgSerPheHisPhePheSerMetTyrPhe 301787 : TCCGAACAGGTACTTACTTACAGTAGAagtttccatttcttttcaatGTATTTC : 301842 vulgar: gi|350422517|ref|XP_003493188.1| 276 352 . KQ414889.1 301614 301842 + 113 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301615 301842 113 + . gene_id 31 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301615 301842 . + . KQ414889.1 exonerate:protein2genome:local exon 301615 301842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301615 301842 113 + . alignment_id 31 ; Query gi|350422517|ref|XP_003493188.1| ; Align 301615 277 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 300 -> 340 Target range: 254071 -> 254191 301 : GluTrpAlaAspGlnAspIleGlnAsnLeuIleThrTyrPheMetMetLeuIleSerI : 320 ||||||.!!!!:...||| !|||! |||.!!||||||.!!:!:! |||:!!:!!: GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaV 254072 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTG : 254129 321 : leCysPheAspIlePheValIleCysTyrIleSerGluIleLeuThrGluGlnCysGl : 339 !! ! ::: |||:::|||||||||||||||!!:! |||||||||||| || alValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGlnValGl 254130 : TTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGGTACA : 254186 340 : nLys : 340 |:!! nGlu 254187 : AGAG : 254191 vulgar: gi|350422517|ref|XP_003493188.1| 300 340 . KQ414889.1 254071 254191 + 108 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254072 254191 108 + . gene_id 32 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254072 254191 . + . KQ414889.1 exonerate:protein2genome:local exon 254072 254191 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254072 254191 108 + . alignment_id 32 ; Query gi|350422517|ref|XP_003493188.1| ; Align 254072 301 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1053 Query range: 0 -> 405 Target range: 256601 -> 258738 1 : MetThrAspAspProValThrValGluArgLysPheGlySerLeuSerGluTyrSerI : 20 ||||||:!!!!: !!.!..!|||:!!! !!!.||| !|||! !|||!!:||||||: MetThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerL 256602 : ATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTC : 256659 21 : leGlnValAsnArgTrpIleLeuLysProIleGlyAlaTrpProSerSerAsnSerTh : 39 !!|||:!!|||||||||.!!|||||||||||||||||||||||| !!|||:::||||| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 256660 : TCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCAC : 256716 40 : rThrAsnArgGluLysPheMetSerTrpIleLeuAsnValIleCysTrpCysPheSer : 58 ||||!.!! !|||::! !:!:||| :!!||||||:!!:!!|||!:: !!! !! ! rThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIle 256717 : TACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATA : 256773 59 : LeuPheThrIleIleProGlyValLeuAsnIleLeuLeuGluLysGluAspLeuTyrL : 78 |||||||||:!:|||||| !!:!!|||:!!:!!!!!|||!!: ! !!:..!!!!|||: LeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrM 256774 : TTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAca : 256833 79 : euLysLeuLysMetPheGlyProLeuSerHisTrpCysValGlyGlyPheAsnTyrAl : 97 ::|||:::||| |||||||||:!!||||||||| !:!!.!! !! !||||||.! etLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrTh 256834 : tgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACAC : 256890 98 : aValLeuLeuLeuArgGlnGlyAspIleHisTyrCysIleLysHisIleArgThrAsp : 116 !:!!|||||||||!:! ! !||||||!.!||||||:!!:!!||||||..!|||||| rLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAsp 256891 : GTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGAT : 256947 117 : TrpLysThrIleThrArgLeuGluAspGlnArgIleMetLeuLysAsnAlaLysLeuG : 136 |||!:!! !:!:! !||| !:!!||||||!:!:!:|||:!!|||||||||!:!!!!| TrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheG 256948 : TGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCG : 257007 137 : lyArgTyrIleAlaCysPheCysAlaAlaPheMetHisGlySerValPheCysThrCy : 155 ||||||||:!:||| ||||||||||||.!!|||!!..!!.!!||||||||| lyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePh 257008 : GTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttctt : 257064 156 : sLeuValLeuGlyAlaPheLysArgThrIleGluValArgAsnGluThrIleLeuVal : 174 ::! !! !!.! ! !! !..!! !|||.!.||| !!|||||||||! :!!||| eValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleVal 257065 : cgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTG : 257121 175 : TyrThrLeuProCysProAlaTyrLys<-><->LeuProValGlnThrAsnProGlyH : 192 ..!|||||| ! !!!.!|||||| ||| !|||.!. !!:!||| !: ArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrA 257122 : CGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGA : 257181 193 : isAspIleIleLeuGlyThrGlnPheLeuSerAlaPheIleAlaThrSerSerAlaAl : 211 !!!!:|||:!::!! !! !||| !! !|||:!!.!!|||||||||!!!|||.!!!. snGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrVa 257182 : ACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGT : 257238 212 : aGlyAlaPheSerLeuAlaThrValPheAlaSerHisAlaLeuGlyGlnLeuAsnIle : 230 !.!! !||||||||||||.!!|||||||||!!!||||||! !|||||||||!.!:!: lSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrVal 257239 : TAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTG : 257295 231 : MetValThrTrpIleAsnGluPheValAsnGlnHisSerLysAspGlnAsnSerAsnA : 250 :!::!!:!!||||||!..||||||||||||:!! |||!:!:!!!::......... LeuMetSerTrpIleThrGluPheValAsnGlu---SerArgAsnArgGluLysThrP 257296 : CTTATGTCGTGGATAACAGAGTTTGTGAATGAG---TCGAGGAATCGggagaaaacgt : 257352 251 : laArgAlaAsnLysIleGlyValIleValGluHisHisLeuArgAlaLeu{Se} >> : 267 !!!.:!!||||||||||||||||||||||||||||||!.!|||{||} heProPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Se}++ 257353 : ttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt.. : 257407 268 : >> Target Intron 1 >>>> {r}LeuIleAlaArgIleGluArgIleMetSer : 277 76 bp {|}!!!|||:!! !||||||..!:!:|||!:! ++{r}PheIleSerTyrIleGluGluValMetAsn 257408 : .......................ag{T}TTCATATCATATATCGAGGAAGTGATGAAC : 257509 278 : ProIleCysPheMetGluMetPheLysCysMetLeuGlyMetGlyMetProSerTyrT : 297 ! !|||||||||:!:|||:!!|||!:!|||! !|||!.!!!: !!|||! !.!!|||| ArgIleCysPheLeuGluLeuPheArgCysThrLeuAlaIleCysMetLeuGlyTyrT 257510 : CGAATATGTTTTTTAGAGTTGTTTAGATGCACGCTGGCTATATGCATGCTGGGATACT : 257569 298 : yrIleLeuAla >>>> Target Intron 2 >>>> GluTrpSerGluHisAsn : 306 ||||||||||| 684 bp ||||||||| !!..::: yrIleLeuAla++ ++GluTrpSerThrGlnAsp 257570 : ACATTCTTGCGgt.........................aggaATGGTCTACGCaagat : 258280 307 : IleGlnAsnIleAlaAlaTyrValMetIleIleIleSerMetThrCysAsnIlePheL : 326 |||||||||:::::::::||| !!||||||:!!||||||:::::: |||||||||: IleGlnAsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheV 258281 : attcaaaatttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttg : 258340 327 : euValCysTyrIleGlyGluIleIleMetGluLys >>>> Target Intron 3 : 338 :::::||||||||||||||||||:!!! |||:!! 90 bp alIleCysTyrIleGlyGluIleLeuThrGluGln++ 258341 : taatatgttACATAGGTGAAATATTAACAGAACAGgt..................... : 258378 339 : >>>> CysLysLysIleGlyAspMetValTyrMetAlaAspTrpHisHisLeuProA : 355 |||||||||:!!||||||:!!|||||||||.!!||||||:!!:!!||||||| ++CysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProA 258379 : ....agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTG : 258517 356 : spGlnAspIleIleAsnLeuIleMetIleIleSerArgSerSerMetGluValLysIl : 374 ||:!! |||:!!:!!||||||:!!:!!|||:!!|||||||||:!!! |||:!!|| spLysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIl 258518 : ACAAAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAAT : 258574 375 : eThrAlaGlyLysIleIleAspMetSerValLeuThrPheAlaAsn >>>> Targe : 390 |||||||||||||...... ||||||:!!! !||||||::!:!! eThrAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAsp++ 258575 : CACCGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATgt.......... : 258624 391 : t Intron 4 >>>> IleValLysThrValPheAlaTyrLeuAsnMetLeuCysGl : 403 69 bp :!!:!!|||||| !|||||||||||||||:!:||| !!|| ++ValIleLysThrSerPheAlaTyrLeuAsnLeuLeuArgGl 258625 : ...............agGTAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCA : 258730 404 : nThrThr : 405 |..!:!! nValSer 258731 : AGTATCG : 258738 vulgar: gi|350412835|ref|XP_003489780.1| 0 405 . KQ414889.1 256601 258738 + 1053 M 183 549 G 0 6 M 58 174 G 1 0 M 24 72 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256602 258738 1053 + . gene_id 1 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256602 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256602 257404 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256602 258738 1053 + . alignment_id 1 ; Query gi|350412835|ref|XP_003489780.1| ; Align 256602 1 549 ; Align 257157 184 174 ; Align 257331 243 72 ; Align 257482 268 99 ; Align 258265 301 111 ; Align 258466 338 156 ; Align 258691 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 869 Query range: 5 -> 299 Target range: 274347 -> 275306 6 : ValThrValGluArgLysPheGlySerLeuSerGluTyrSerIleGlnValAsnArgT : 25 :!!!.!||| !!!.|||! !|||||||||!!:||||||:!:|||:!!||||||| IleAsnValThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgT 274348 : ATAAACGTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGAT : 274405 26 : rpIleLeuLysProIleGlyAlaTrpProSerSerAsnSerThrThrAsnArgGluLy : 44 ||.!!||||||||||||||||||||||||! !:!!::: !!||||||!!. !|||:: rpPheLeuLysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGluAr 274406 : GGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACG : 274462 45 : sPheMetSerTrpIleLeuAsnValIleCysTrpCysPheSerLeuPheThrIleIle : 63 !.!!:!:||| :::||| :::|||:::||||||! !|||! !|||:!!||| gIleLeuSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIle 274463 : AATCCTTTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATC : 274519 64 : ProGlyValLeuAsnIleLeuLeuGluLysGluAspLeuTyrLeuLysLeuLysMetP : 83 |||.!!:!!!!!:!!|||:!!|||! ! ! |||..!|||:!!||||||||||||:!!. ProSerIlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuL 274520 : CCAAGCATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGC : 274579 84 : heGlyProLeuSerHisTrpCysValGlyGlyPheAsnTyrAlaValLeuLeuLeuAr : 102 !!|||||||||.!!||||||! !:!!||||||.!!||||||.!!..!||||||||||| euGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuAr 274580 : TCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACG : 274636 103 : gGlnGlyAspIleHisTyrCysIleLysHisIleArgThrAspTrpLysThrIleThr : 121 |... !!!:|||!.! !|||:!::!!|||!!:!:!|||||||||!:!! !:!:||| gSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThr 274637 : CAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACC : 274693 122 : ArgLeuGluAspGlnArgIleMetLeuLysAsnAlaLysLeuGlyArgTyrIleAlaC : 141 |||! !|||||||||!:!:!:||||||||||||||||||:!!|||||||||:!!||| ArgProGluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaI 274694 : AGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGA : 274753 142 : ysPheCysAlaAlaPheMetHisGlySerValPheCysThrCysLeuValLeuGlyAl : 160 !||||||||||||||||||!!. !!.!!|||.!!||| !|||:!!:!! !!.! lePheCysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPh 274754 : TCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTT : 274810 161 : aPheLysArgThrIleGluValArgAsnGluThrIleLeuValTyrThrLeuProCys : 179 ! !! !!:!|||:!!:!!||| !!|||||||||! ! !|||:!!! !||||||||| eThrMetGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCys 274811 : CACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGT : 274867 180 : ProAlaTyrLys<-><->LeuProValGlnThrAsnProGlyHisAspIleIleLeuG : 197 !||||||||| :!! !!|||.!.|||!:!||| !:!!!!:|||:!!|||! LysAlaTyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValLeuA 274868 : AAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTG : 274927 198 : lyThrGlnPheLeuSerAlaPheIleAlaThrSerSerAlaAlaGlyAlaPheSerLe : 216 .!:!!||||||:!!|||!.!||||||!.!!.!|||||||||!.!|||||||||||||| laSerGlnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLe 274928 : CCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCT : 274984 217 : uAlaThrValPheAlaSerHisAlaLeuGlyGlnLeuAsnIleMetValThrTrpIle : 235 ||||.!!|||||||||:!!||||||! !|||||||||!:!:!::!!:!!! !|||||| uAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIle 274985 : TGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATC : 275041 236 : AsnGluPheValAsnGlnHisSerLysAspGlnAsnSerAsnAlaArgAlaAsnLysI : 255 !.!|||||||||||| ||||||!:!|||||||||...|||... ::!:!!| ThrGluPheValAsn---HisSerArgAspGlnAsnLysAsnValTyrPheSerGluI 275042 : ACCGAGTTTGTGAAT---CATTCCAGGGAtcagaataaaaatgtttatttcagCGAGA : 275098 256 : leGlyValIleValGluHisHisLeuArgAlaLeu{Se} >>>> Target Intro : 267 ||||||||:!!||||||||||||||||||!.!|||{||} 74 bp leGlyValValValGluHisHisLeuArgValLeu{Se}++ 275099 : TCGGCGTGGTTGTCGAACATCATCTGAGGGTACTC{AG}gt................. : 275138 268 : n 1 >>>> {r}LeuIleAlaArgIleGluArgIleMetSerProIleCysPheMet : 282 {|}!!!||||||||||||||| !:!:|||!:!! !|||||||||||| ++{r}PheIleAlaArgIleGluAspValMetAsnArgIleCysPheMet 275139 : ........ag{T}TTCATAGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATG : 275253 283 : GluMetPheLysCysMetLeuGlyMetGlyMetProSerTyrTyrIleLeu : 299 |||:!!|||||||||! |||! !||| !!|||! !.!!|||||||||||| GluLeuPheLysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleLeu 275254 : GAATTGTTCAAGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTCTC : 275306 vulgar: gi|350412835|ref|XP_003489780.1| 5 299 . KQ414889.1 274347 275306 + 869 M 178 534 G 0 6 M 57 171 G 1 0 M 25 75 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274348 275306 869 + . gene_id 2 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274348 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274348 275135 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274348 275306 869 + . alignment_id 2 ; Query gi|350412835|ref|XP_003489780.1| ; Align 274348 6 534 ; Align 274888 184 171 ; Align 275059 242 75 ; Align 275211 268 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 839 Query range: 0 -> 299 Target range: 266586 -> 267555 1 : MetThrAspAspProValThrValGluArgLysPheGlySerLeuSerGluTyrSerI : 20 |||.!!:!!!!: !!:!!..!:!!||| !!!..!...!|||||||||!!:||||||: MetAlaAsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerL 266587 : ATGGCTAACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCC : 266644 21 : leGlnValAsnArgTrpIleLeuLysProIleGlyAlaTrpProSerSerAsnSerTh : 39 !:|||:!!|||||||||.!!|||||||||||||||||||||||| !!! !::: !|| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuTh 266645 : TGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCAC : 266701 40 : rThrAsnArgGluLysPheMetSerTrpIleLeuAsnValIleCysTrpCysPheSer : 58 |:!!!!.! !|||::!.!!:!:|||!:: !|||! !|||||||||!::|||! !! ! rSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIle 266702 : ATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATA : 266758 59 : LeuPheThrIleIleProGlyValLeuAsnIleLeuLeuGluLysGluAspLeuTyrL : 78 |||||||||:!!|||||| !!:!!!!!:!!:!!:!!|||||| ! |||..!:!! ! LeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgT 266759 : CTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTA : 266818 79 : euLysLeuLysMetPheGlyProLeuSerHisTrpCysValGlyGlyPheAsnTyrAl : 97 !|||:!!|||:!!|||||||||||||||||||||! !|||||||||.!!||||||.! hrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrTh 266819 : CGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACAC : 266875 98 : aValLeuLeuLeuArgGlnGlyAspIleHisTyrCysIleLysHisIleArgThrAsp : 116 !..!||||||||||||... !!!:|||!.! !|||:!!:!!|||!!:!:!|||||| rThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAsp 266876 : CACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGAT : 266932 117 : TrpLysThrIleThrArgLeuGluAspGlnArgIleMetLeuLysAsnAlaLysLeuG : 136 |||!:!! !:!:||||||! !||||||:!!!:!:!:|||||||||||||||!:!:!!| TrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleG 266933 : TGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCG : 266992 137 : lyArgTyrIleAlaCysPheCysAlaAlaPheMetHisGlySerValPheCysThrCy : 155 |||||||||||||| ||||||||||||||||||!!. !!.!!|||.!! !! !|| lyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCy 266993 : GTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTG : 267049 156 : sLeuValLeuGlyAlaPheLysArgThrIleGluValArgAsnGluThrIleLeuVal : 174 |:!!:!! !!.! ! !! !!:!|||:!:|||||| !!|||||||||! :!!||| sValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleVal 267050 : TGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTA : 267106 175 : TyrThrLeuProCysProAlaTyrLys<-><->LeuProValGlnThrAsnProGlyH : 192 :!! !||||||||| !!!.!|||||| :!! !!|||.!.|||!:!||| !: HisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrA 267107 : CATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGA : 267166 193 : isAspIleIleLeuGlyThrGlnPheLeuSerAlaPheIleAlaThrSerSerAlaAl : 211 !!!!:|||:!!|||! !:!!||||||:!!|||!.!||||||!.!!.!||||||!.!!. snGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValVa 267167 : ACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGT : 267223 212 : aGlyAlaPheSerLeuAlaThrValPheAlaSerHisAlaLeuGlyGlnLeuAsnIle : 230 !||||||||||||||||||.!!|||||||||:!!||||||! !|||||||||!:!:!: lGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerVal 267224 : CGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTG : 267280 231 : MetValThrTrpIleAsnGluPheValAsnGlnHisSerLysAspGlnAsnSerAsnA : 250 :!!:!!! !||||||!!.||||||||||||!:! |||!:!|||...|||!.!|||! LeuMetMetTrpIleLysGluPheValAsnArg---SerArgAspSerAsnLysAsnV 267281 : CTGATGATGTGGATCAAGGAGTTTGTGAACCGA---TCCAGAGATAGCAATAAGAACG : 267337 251 : laArgAlaAsnLysIleGlyValIleValGluHisHisLeuArgAlaLeu{Se} >> : 267 .! !! !:!!||||||||||||:!!||||||||||||||||||!.!|||{||} alCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 267338 : TTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG}gt.. : 267392 268 : >> Target Intron 1 >>>> {r}LeuIleAlaArgIleGluArgIleMetSer : 277 69 bp {|}!!!|||||||||||||||!!!:!!|||||| ++{r}PheIleAlaArgIleGluSerValMetSer 267393 : .......................ag{C}TTCATAGCACGTATCGAAAGTGTAATGAGC : 267487 278 : ProIleCysPheMetGluMetPheLysCysMetLeuGlyMetGlyMetProSerTyrT : 297 !|||||||||||||||:!!|||||||||! :!!! !!!: !!:!!! !||||||| GluIleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSerTyrT 267488 : GAAATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCTATT : 267547 298 : yrIleLeu : 299 |||||||| yrIleLeu 267548 : ATATCCTT : 267555 vulgar: gi|350412835|ref|XP_003489780.1| 0 299 . KQ414889.1 266586 267555 + 839 M 183 549 G 0 6 M 58 174 G 1 0 M 24 72 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266587 267555 839 + . gene_id 3 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266587 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266587 267389 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267555 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266587 267555 839 + . alignment_id 3 ; Query gi|350412835|ref|XP_003489780.1| ; Align 266587 1 549 ; Align 267142 184 174 ; Align 267316 243 72 ; Align 267460 268 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 783 Query range: 0 -> 341 Target range: 259721 -> 261856 1 : MetThrAspAspProValThrValGluArgLysPheGlySerLeuSerGluTyrSerI : 20 ||||||:!! ! !!||| !||||||! !!..||| !|||! !|||!!:||||||: MetThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerL 259722 : ATGACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCC : 259779 21 : leGlnValAsnArgTrpIleLeuLysProIleGlyAlaTrpProSerSerAsnSerTh : 39 !!||| !!|||||||||.!!|||||||||||||||||||||||| !!|||::!||||| euGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 259780 : TCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCAC : 259836 40 : rThrAsnArgGluLysPheMetSerTrpIleLeuAsnValIleCysTrpCysPheSer : 58 ||||!..! !||||||.!!!!:||| ||||||! ! !!||||||!:: !! !! ! rThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIle 259837 : GACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATA : 259893 59 : LeuPheThrIleIleProGlyValLeuAsnIleLeuLeuGluLysGluAspLeuTyrL : 78 ||| !!|||:!:|||||| !!||||||:!!!!:|||||||||||||||..!||||||: LeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrM 259894 : CTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACA : 259953 79 : euLysLeuLysMetPheGlyProLeuSerHisTrpCysValGlyGlyPheAsnTyrAl : 97 !!||| !|||:!!.!!|||||||||!!!||||||! !|||||| !!.!!||||||.! etLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrTh 259954 : TGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACAC : 260010 98 : aValLeuLeuLeuArgGlnGlyAspIleHisTyrCysIleLysHisIleArgThrAsp : 116 !..!|||||||||||| !!||||||! ! !|||:!::!!|||:!:..!!.!||| rThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAsp 260011 : AACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGAT : 260067 117 : TrpLysThrIleThrArgLeuGluAspGlnArgIleMetLeuLysAsnAlaLysLeuG : 136 |||!:!! !||||||||| !:!!||||||!.!:!:||||||!:! !!||||||!!!| TrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheG 260068 : TGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCG : 260127 137 : lyArgTyrIleAlaCysPheCysAlaAlaPheMetHisGlySerValPheCysThrCy : 155 ||||||||:!!|||..!! !||||||||||||:!!!!.|||.!!|||.!.||| !|| lyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCy 260128 : GCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTG : 260184 156 : sLeuValLeuGlyAlaPheLysArgThrIleGluValArgAsnGluThrIleLeuVal : 174 ||||||| !! ! ! !! !..!..!|||:!!||| !!|||||||||! :!!||| sLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal 260185 : TTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTT : 260241 175 : TyrThrLeuProCysProAlaTyrLys<-><->LeuProValGlnThrAsnProGlyH : 192 :!! !||||||||| !!!.!|||||| :!! !|||.!. !!:!||| !: HisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetA 260242 : CATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGA : 260301 193 : isAspIleIleLeuGlyThrGlnPheLeuSerAlaPheIleAlaThrSerSerAlaAl : 211 !!!!:|||:!!|||! !..!||||||:!!|||!.!||||||!.!!.!||||||.!!!. snGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrVa 260302 : ACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGT : 260358 212 : aGlyAlaPheSerLeuAlaThrValPheAlaSerHisAlaLeuGlyGlnLeuAsnIle : 230 !||| !||||||||||||.!!|||.!..!!:!!||||||! !||||||||||||:!: lGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnVal 260359 : TGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTG : 260415 231 : MetValThrTrpIleAsnGluPheValAsnGlnHisSerLysAspGlnAsnSerAsnA : 250 :!::!! !||||||!..|||||||||:!!:!! |||!:!:!!::!!!.!.!!!.| LeuMetGluTrpIleThrGluPheValAspGlu---SerArgAsnArgLysLysLysA 260416 : CTCATGGAATGGATCACGGAGTTTGTGGACGAG---TCGAGGAACAGGAAGAAAAAGG : 260472 251 : laArgAlaAsnLysIleGlyValIleValGluHisHisLeuArgAlaLeu{Se} >> : 267 ||! ! !!!.:!!||||||||||||||||||||||||||||||||||||{!!} laProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeu{Th}++ 260473 : CTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC{AC}gt.. : 260527 268 : >> Target Intron 1 >>>> {r}LeuIleAlaArgIleGlu<->ArgIleMet : 276 1103 bp {!}||| ! ! !:!!||| |||! ... ++{r}LeuTyrArgAlaLeuGlu***ArgArgGln 260528 : .......................ag{T}TTGTATCGGGCCTTAGAATAACGCAGGCAA : 261656 277 : SerProIleCysPheMetGluMetPheLysCys<->MetLeuGlyMetGlyMetProS : 295 !!!|||! !! !!:! ! ! !:! ! ||| :!! !!!: !.!. ArgProThrPheTyrAspTyrSerTyrAspCysAsnCysValIleIlePhePhe***T 261657 : AGGCCAACATTTTACGATTACAGTTACGATTGCAATTGTGTAATAATCTTTTTctgat : 261716 296 : erTyrTyrIleLeuAlaGluTrpSerGluHisAsnIleGlnAsnIleAlaAlaTyrVa : 314 :::::::::||| ||||||:!!|||!!.:!!|||||||||:!::!!.!!||| ! yrPhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPh 261717 : atttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTT : 261773 315 : lMetIleIleIleSerMetThrCysAsnIlePheLeuValCysTyrIleGlyGluIle : 333 !|||!!::!:|||:!!!!: !! !|||:!!|||:!!:!!|||||||||||||||||| eMetMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIle 261774 : CATGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATA : 261830 334 : IleMetGluLysCysLysLysIle : 341 :!!! !|||:!! :!! ! :!: LeuThrGluGlnValGlnHisLeu 261831 : CTAACGGAACAGGTACAACATTTG : 261856 vulgar: gi|350412835|ref|XP_003489780.1| 0 341 . KQ414889.1 259721 261856 + 783 M 183 549 G 0 6 M 58 174 G 1 0 M 24 72 S 0 2 5 0 2 I 0 1099 3 0 2 S 1 1 M 6 18 G 0 3 M 14 42 G 0 3 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259722 261856 783 + . gene_id 4 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259722 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259722 260524 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 261627 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261626 261627 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261628 261856 . + . KQ414889.1 exonerate:protein2genome:local exon 261628 261856 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259722 261856 783 + . alignment_id 4 ; Query gi|350412835|ref|XP_003489780.1| ; Align 259722 1 549 ; Align 260277 184 174 ; Align 260451 243 72 ; Align 261629 268 18 ; Align 261650 274 42 ; Align 261695 288 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 740 Query range: 9 -> 266 Target range: 262825 -> 263599 10 : ArgLysPheGlySerLeuSerGluTyrSerIleGlnValAsnArgTrpIleLeuLysP : 29 ..!!..|||||||||||||||!!:||||||:!:|||:!!|||||||||:!:||||||| GluSerPheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysP 262826 : GAAAGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAAC : 262883 30 : roIleGlyAlaTrpProSerSerAsnSerThrThrAsnArgGluLysPheMetSerTr : 48 ||||||||||||||||| !||| !|||! !:!!!..! !|||::!.!!!!:!!!!: roIleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPh 262884 : CGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTT : 262940 49 : pIleLeuAsnValIleCysTrpCysPheSerLeuPheThrIleIleProGlyValLeu : 67 ::!!|||! !|||:!!|||!::|||.!!! !|||! !|||:!!||||||..!:!!||| eLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeu 262941 : TCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTT : 262997 68 : AsnIleLeuLeuGluLysGluAspLeuTyrLeuLysLeuLysMetPheGlyProLeuS : 87 :!!|||:!!|||||| |||:!!!!!:!!:!!||||||:!!:!:.!!|||||||||. HisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuG 262998 : CATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCG : 263057 88 : erHisTrpCysValGlyGlyPheAsnTyrAlaValLeuLeuLeuArgGlnGlyAspIl : 106 !!!!.|||! !|||||| !.!!||||||.!! !|||||||||!.!... !||||| lyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIl 263058 : GTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATAT : 263114 107 : eHisTyrCysIleLysHisIleArgThrAspTrpLysThrIleThrArgLeuGluAsp : 125 |!!. !|||:!::!!|||:!:!:! !|||||| ! !:!:||||||||||||||| eGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAsp 263115 : ACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGAT : 263171 126 : GlnArgIleMetLeuLysAsnAlaLysLeuGlyArgTyrIleAlaCysPheCysAlaA : 145 |||||||||||||||||||||||||||! !|||||||||:!:|||..!! !|||||| GlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaI 263172 : CAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGA : 263231 146 : laPheMetHisGlySerValPheCysThrCysLeuValLeuGlyAlaPheLysArgTh : 164 !||||||!!. !|||:!!.!.|||! !||||||||| !!.! ! !! !!:!.. lePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnVa 263232 : TCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGT : 263288 165 : rIleGluValArgAsnGluThrIleLeuValTyrThrLeuProCysProAlaTyrLys : 183 !||||||! ! !!|||||||||! !:!!:!! !! !||||||||||||!.!|||||| lIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLys 263289 : GATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAA : 263345 184 : <-><->LeuProValGlnThrAsnProGlyHisAspIleIleLeuGlyThrGlnPheL : 201 :!!||||||.!.||||||||| !:!!!!:|||.!!|||!.!|||||||||| GluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheL 263346 : GAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTC : 263405 202 : euSerAlaPheIleAlaThrSerSerAlaAlaGlyAlaPheSerLeuAlaThrValPh : 220 |||||!.!||||||!.!|||:!!!!!.!!!.!|||||||||.!!:!!.!!.!!||||| euSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPh 263406 : TGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTT : 263462 221 : eAlaSerHisAlaLeuGlyGlnLeuAsnIleMetValThrTrpIleAsnGluPheVal : 239 ||||.!!||||||! !||||||||||||:!::!!:!!:!!||||||!..||||||||| eAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheVal 263463 : CGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTG : 263519 240 : AsnGlnHisSerLysAspGlnAsnSerAsnAlaArgAlaAsnLysIleGlyValIleV : 259 |||||| |||!:!|||:!!|||!.!||| ! ! !!.!:!!||||||||||||| AsnGln---SerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleV 263520 : AACCAG---TCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCG : 263576 260 : alGluHisHisLeuArgAlaLeu : 266 |||||||||||||||||!.!||| alGluHisHisLeuArgValLeu 263577 : TTGAACATCATCTGAGAGTTCTG : 263599 vulgar: gi|350412835|ref|XP_003489780.1| 9 266 . KQ414889.1 262825 263599 + 740 M 174 522 G 0 6 M 58 174 G 1 0 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262826 263599 740 + . gene_id 5 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262826 263599 . + . KQ414889.1 exonerate:protein2genome:local exon 262826 263599 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 262826 263599 740 + . alignment_id 5 ; Query gi|350412835|ref|XP_003489780.1| ; Align 262826 10 522 ; Align 263354 184 174 ; Align 263528 243 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 579 Query range: 17 -> 401 Target range: 278576 -> 280539 18 : TyrSerIleGlnValAsnArgTrpIleLeuLysProIleGlyAlaTrpProSerSerA : 37 ||||||:!!|||:!!|||||||||.!!|||||||||||||||!.!|||||| !||| TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 38 : snSerThrThrAsnArgGluLysPheMetSerTrpIleLeuAsnValIleCysTrpCy : 56 !!!!..!|||!.! !||||||.!!! ||| !:!!||| :!!||| !!!! ! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 57 : sPheSerLeuPheThrIleIleProGlyValLeuAsnIleLeuLeuGluLysGlu<-> : 75 !.!.! ! !||| !:!::!!||| !!!.!||| !! !:!!|||!!:||| eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 76 : AspLeuTyrLeuLysLeuLysMetPheGlyProLeuSerHisTrpCysValGlyGlyP : 94 |||||| !! !|||:!!||||||.!!|||||||||||| !!! :!!!.! !. AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 95 : heAsnTyrAlaValLeuLeuLeuArgGlnGlyAspIleHisTyrCysIleLysHisIl : 113 !!!!.||| !:!!|||:!!! !||| ||| ! ||| ! ! |||:!:!!. !!|| leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 114 : eArgThrAspTrpLys<-><-><->ThrIleThrArgLeuGluAspGlnArgIleMet : 129 |||||||||||||... :!! ! ::: |||::::::...|||||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 130 : LeuLysAsnAlaLysLeuGlyArgTyrIleAlaCysPheCysAlaAlaPheMetHis< : 149 ! ! !:!|||!:!:!!||||||! !:!:||| !||| !!|||!.!||||||:!! ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 150 : ->GlySerValPheCysThrCysLeuValLeuGlyAlaPheLysArgThrIleGluVa : 167 |||.!!||||||! !|||..!:!!:!!! ! ! ! !|||||| :! erGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIl 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCAT : 279039 168 : lArgAsnGluThrIleLeuValTyrThrLeuProCysProAlaTyrLysLeuProVal : 186 ! !|||||||||:!: ! ! ! .!!!!!||| ! ! ! ! ||| ! ! eAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 279040 : CGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCG : 279096 187 : GlnThrAsnProGlyHisAspIleIleLeuGlyThrGlnPheLeuSerAlaPheIleA : 206 !::|||!:!|||..! !!!:|||:!:! ! !! !|||! !|||:!!||||||:!! ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValL 279097 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTT : 279156 207 : laThrSerSerAlaAlaGlyAlaPheSerLeuAlaThrValPheAlaSerHisAlaLe : 225 ! !||| !.!!!.!||||||! !|||||| !.!!||||||!.!! !|||!.!! euTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCy 279157 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTG : 279213 226 : uGlyGlnLeuAsnIleMetValThrTrpIleAsnGluPheValAsnGlnHisSerLys : 244 !||||||!!!!..|||:!:|||||| !:!::!!:!!.!!:!!:!! ! !.! ! sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLysGly 279214 : TGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGG : 279270 245 : AspGlnAsnSerAsnAlaArgAlaAsnLysIleGlyValIleValGluHisHisLeuA : 264 :!!!:!! !!:!.!!!.!! !.!.::!:!:|||! !|||:!!||||||||||||! ArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuL 279271 : AGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGA : 279330 265 : rgAlaLeu{Se} >>>> Target Intron 1 >>>> {r}LeuIleAlaArgIl : 272 :! !|||{.!} 657 bp {!}|||.!!.!!!.! ysIleLeu{Gl}++ +-{y}LeuPheThrHisGl 279331 : AGATACTG{GG}gt.........................at{A}TTATTTACTCACGG : 280011 273 : eGluArgIleMetSerProIleCysPheMetGluMetPheLysCysMetLeuGlyMet : 291 !.!.||| ..! !:!!|||!:!.!..!.!!: ! ! !...! :!!!.!.!. yAsnArg------AspAspLeuCysTyrPheHisIleValMetAlaLysIleAlaPhe 280012 : TAACAGA------GACGACTTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTC : 280062 292 : GlyMetProSerTyrTyrIleLeuAlaGluTrpSerGluHisAsnIleGlnAsnIleA : 311 ! !||| !|||! ! :!!!!! !||||||..!:!!:!!:!! ! !...! ValMetTyrSerLeuSerValPhe***GluTrpGluGlnAsnAspAlaIleGlyThrP 280063 : GTCATGTACTCGTTGTCAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGT : 280122 312 : laAlaTyrValMetIleIleIleSerMetThrCysAsnIlePheLeuValCysTyrIl : 330 !.!!|||:!!|||.!!:!!||||||:!:|||! !|||:!!|||:!!:!!|||||||| heThrTyrLeuMetPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIl 280123 : TCACGTATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACAT : 280179 331 : eGlyGluIleIleMetGluLys >>>> Target Intron 2 >>>> CysLysL : 340 ||||||||||:!! |||::: 74 bp ||| !| eGlyGluIleLeuSerGluGln++ ++CysLeuL 280180 : CGGTGAAATTCTCTCCGAACaggt.........................agTGCTTAA : 280283 341 : ysIleGlyAspMetValTyrMetAlaAspTrpHisHisLeuProAspGlnAspIleIl : 359 ||:!!|||! ..!|||||| !||||||:!!!.!||||||! :!! ! ! ysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGl 280284 : AAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACA : 280340 360 : eAsnLeuIleMetIleIleSerArgSerSerMetGluValLysIleThrAlaGlyLys : 378 !..!||||||:!!|||.!!:!! !|||!:! ...:!!|||:!!|||||||||||| nGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLys 280341 : AGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAG : 280397 379 : IleIleAspMetSerValLeuThrPheAlaAsn >>>> Target Intron 3 >> : 390 |||||||||:!:|||:!! !!:!|||..!!:! 71 bp IleIleAspLeuSerLeuSerSerPheCysSer++ 280398 : ATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt....................... : 280435 391 : >> IleValLysThrValPheAlaTyrLeuAsnMetLeu : 401 :!::!!||||||!.!||||||||||||!:!:!:||| ++ValLeuLysThrAlaPheAlaTyrLeuSerLeuLeu 280436 : ..agGTGTTAAAAACGGCATTCGCATATCTGAGCTTATTA : 280539 vulgar: gi|350412835|ref|XP_003489780.1| 17 401 . KQ414889.1 278576 280539 + 579 M 57 171 G 0 3 M 44 132 G 0 9 M 30 90 G 0 3 M 118 354 S 0 2 5 0 2 I 0 653 3 0 2 S 1 1 M 7 21 G 2 0 M 61 183 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 280539 579 + . gene_id 6 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278577 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279340 . + . insertions 15 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279997 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279996 279997 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 279998 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 279998 280202 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280539 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280539 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278577 280539 579 + . alignment_id 6 ; Query gi|350412835|ref|XP_003489780.1| ; Align 278577 18 171 ; Align 278751 75 132 ; Align 278892 119 90 ; Align 278985 149 354 ; Align 279999 268 21 ; Align 280020 277 183 ; Align 280277 338 156 ; Align 280504 390 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 546 Query range: 17 -> 400 Target range: 284523 -> 287252 18 : TyrSerIleGlnValAsnArgTrpIleLeuLysProIleGlyAlaTrpProSerSerA : 37 ||||||:!!|||:!!|||||||||.!!|||||||||||||||!.!|||||| !||| TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 38 : snSerThrThrAsnArgGluLysPheMetSerTrpIleLeuAsnValIleCysTrpCy : 56 !!!!..!|||!.! !||||||.!!! ||| !:!!||| :!!||| !!!! ! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 57 : sPheSerLeuPheThrIleIleProGlyValLeuAsnIleLeuLeuGluLysGlu<-> : 75 !.!.! ! !||| !:!::!!||| !!!.!||| !! !:!!|||!!:||| eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 76 : AspLeuTyrLeuLysLeuLysMetPheGlyProLeuSerHisTrpCysValGlyGlyP : 94 |||||| !! !|||:!!||||||.!!|||||||||||| !!! :!!!.!!.!. AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 95 : heAsnTyrAlaValLeuLeuLeuArgGlnGlyAspIleHisTyrCysIleLysHisIl : 113 !!!!.||| !:!!|||:!!! !||| ||| ! ||| ! ! |||:!:||| !!|| leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 114 : eArgThrAsp{Tr} >>>> Target Intron 1 >>>> {p}LysThrIleThr : 121 ||||.!!|||{||} 1012 bp {|} :!! !!:: eArgAlaAsp{Tr}++ +-{p}LeuSerHisSer 284813 : TCGTGCGGAC{TG}gt.........................ac{G}CTTTCGCATAGt : 285848 122 : ArgLeuGluAspGlnArgIleMetLeuLysAsnAlaLysLeuGlyArgTyrIleAlaC : 141 ::: |||::::::...|||||| ! ! !:!|||!:!:!!||||||! !:!:||| GlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaI 285849 : caagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGA : 285908 142 : ysPheCysAlaAlaPheMetHis<->GlySerValPheCysThrCysLeuValLeuGl : 159 !|||||||||!.!||||||:!! |||.!! !!|||! !||| :!!:!!! ! lePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLe 285909 : TCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTT : 285965 160 : yAlaPheLysArgThrIleGluValArgAsnGluThrIleLeuValTyrThrLeuPro : 178 !..! !|||||| :!! !|||||||||:!: ! ! ! .!!!!!||| uCysThrValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPhePro 285966 : GTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCG : 286022 179 : CysProAlaTyrLysLeuProValGlnThrAsnProGlyHisAspIleIleLeuGlyT : 198 ! ! ! ! ||| ! !!::|||!:!|||..! !!!:|||:!:! ! !! IleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheM 286023 : ATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCA : 286082 199 : hrGlnPheLeuSerAlaPheIleAlaThrSerSerAlaAlaGlyAlaPheSerLeuAl : 217 !|||! !|||:!!||||||:!! ! !||| !.!!!.!||||||! !|||||||| etGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAl 286083 : TGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGC : 286139 218 : aThrValPheAlaSerHisAlaLeuGlyGlnLeuAsnIleMetValThrTrpIleAsn : 236 |.!!||||||!.!! !|||!.!! !||||||!!!!..|||:!:|||||| !:!::!! aAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAsp 286140 : TGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGAT : 286196 237 : GluPheValAsnGlnHisSerLysAspGlnAsnSerAsnAlaArgAlaAsnLysIleG : 256 :!!.!!|||:!! ! !.! ! :!!...! !!:!.!!!.!! !.!.::!:!:| LysLeuValAspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuG 286197 : AAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGG : 286256 257 : lyValIleValGluHisHisLeuArgAlaLeu{Se} >>>> Target Intron 2 : 267 ||! !|||:!!||||||||||||!:! !|||{.!} 491 bp lyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 286257 : GAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt.................... : 286293 268 : >>>> {r}LeuIleAlaArgIleGluArgIleMetSerProIleCysPheMetGlu : 283 {!}:!!:!! ! ! !!!: !!! !! ..! !:!:|||!:! .!. -+{y}IleLeuPhe---ThrAspGlyAsnArgAspAspLeuCysTyrTyrHis 286294 : .....gg{G}ATATTATTT---ACTGACGGTAACAGAGACGACTTGTGTTATTACCAT : 286825 284 : MetPheLysCysMetLeuGlyMetGlyMetProSerTyrTyrIleLeuAlaGluTrpS : 303 ! ! ! !...!!::!!!.!.!.! !||| !|||! ! :!!!!! !||||||. ThrValMetAlaIleIleAlaPheValMetTyrSerLeuSerValPhe***GluTrpG 286826 : ACTGTAATGGCAATAATTGCATTCGTCATGTACTCGTTGTCAGTTTTCTAGGAATGGG : 286885 304 : erGluHisAsnIleGlnAsnIleAlaAlaTyrValMetIleIleIleSerMetThrCy : 322 .!:!! !.!.! ! !...! !.!!||| !! !:!::!::!!|||.!.|||! luGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerPheThrPh 286886 : AGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCACGTT : 286942 323 : sAsnIlePheLeuValCysTyrIleGlyGluIleIleMetGluLys >>>> Targe : 338 !|||:!!|||:!!:!!||||||||||||||||||:!! |||::: eAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286943 : CAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt.......... : 286992 339 : t Intron 3 >>>> CysLysLysIleGlyAspMetValTyrMetAlaAspTrpHi : 351 74 bp ||| !|||:!!||| ..!|||||| !||||||:! ++CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTy 286993 : ...............agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTA : 287103 352 : sHisLeuProAspGlnAspIleIleAsnLeuIleMetIleIleSerArgSerSerMet : 370 !!.!||||||! :!! ! !..!||||||:!!|||.!!:!! !|||!:! rArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSer 287104 : TCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCT : 287160 371 : GluValLysIleThrAlaGlyLysIleIleAspMetSerValLeuThrPheAlaAsnI : 390 ...:!!|||:!!|||||||||||||||||||||:!:|||:!! !!:!|||..!!:!: SerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSerV 287161 : TCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCG : 287220 391 : leValLysThrValPheAlaTyrLeuAsnMet : 400 !: !! ! ! !!!.:!!|||! !:!!:!! alSerIleIleAsnLeuSerTyrTyrHisLeu 287221 : TGAGTATCATAAATTTATCCTATTATCATTTG : 287252 vulgar: gi|350412835|ref|XP_003489780.1| 17 400 . KQ414889.1 284523 287252 + 546 M 57 171 G 0 3 M 42 126 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 31 93 G 0 3 M 118 354 S 0 2 5 0 2 I 0 487 3 0 2 S 1 1 M 3 9 G 1 0 M 66 198 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 287252 546 + . gene_id 7 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284524 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286781 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286780 286781 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 286782 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286782 286989 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284524 287252 546 + . alignment_id 7 ; Query gi|350412835|ref|XP_003489780.1| ; Align 284524 18 171 ; Align 284698 75 126 ; Align 285839 118 93 ; Align 285935 149 354 ; Align 286783 268 9 ; Align 286792 272 198 ; Align 287064 338 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 513 Query range: 18 -> 395 Target range: 217177 -> 219686 19 : SerIleGlnValAsnArgTrpIleLeuLysProIleGlyAlaTrpProSerSerAsnS : 38 ||||||||| !|||||||||:!:|||||||||!!:||| !||||||!:!|||..!! SerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnSerArgT 217178 : aGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACTCACGTA : 217235 39 : erThrThrAsnArgGluLysPheMetSerTrpIleLeuAsnValIleCysTrpCysPh : 57 !!||||||!.. !..!|||.!!:!:! ! :!::!!|||!.!:!!|||!:: !!!! hrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTyrGlyLe 217236 : CCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTACGGTTT : 217292 58 : eSerLeuPheThrIleIleProGlyValLeuAsnIleLeuLeuGluLysGluAspLeu : 76 .! ! !||| !.!!:!!||| !! !:!! !!:!:!!!|||||| ||||||||| uIleSerPheLeuPheValProCysSerMetTyrValPheLeuGluValGluAspLeu 217293 : GATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAGATCTC : 217349 77 : TyrLeuLysLeuLysMetPheGlyProLeuSerHisTrpCysValGlyGlyPheAsnT : 96 ||| !|||||||||:!!||||||||||||! ! !!! :!!!.! ! !!!!.| TyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValMetAlaPheValLysT 217350 : TACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGT : 217409 97 : yrAlaValLeuLeuLeuArgGlnGlyAspIleHisTyrCysIleLysHisIleArgTh : 115 || ! !|||:!!:!!!.!:!!!.!||||||!.! ! |||:!:!:!...|||..! yrTyrSerLeuIleValHisLysAlaAspIleArgGluCysValArgArgIleGluAr 217410 : ATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACG : 217466 116 : rAspTrpLysThrIleThrArgLeuGluAspGlnArgIleMetLeuLysAsnAlaLys : 134 !||||||!:!!.!:!!! ! !! !:!!|||::!..! |||:!! !||||||!!. gAspTrpArgAsnValArgCysGluLysAspArgGluAlaMetIleValAsnAlaAsn 217467 : GGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAAT : 217523 135 : LeuGlyArgTyrIleAlaCysPheCysAlaAlaPheMetHis<->GlySerValPheC : 153 !!!|||||| ! :!:!.! .!!|||.!! !||||||:!! ||| |||||| PheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheValPheT 217524 : TTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcgtttttt : 217583 154 : ysThrCysLeuValLeuGlyAlaPheLysArgThrIle<->GluValArgAsnGluTh : 171 ! !:!!! ! !::! ! !|||! !:!! ||| ! !!||| || yrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuTh 217584 : attacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTAC : 217640 172 : rIleLeuValTyrThrLeuProCysProAlaTyrLysLeuProValGlnThrAsnPro : 190 |.!!:!! !! ..!!!!|||! ! !! !|||! :!! !..!!:: !!.!||| rPheIleProLeuValPheProPheThrLysTyrIleIleAspThrArgTyrThrPro 217641 : CTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCT : 217697 191 : GlyHisAspIleIleLeuGlyThrGlnPheLeuSerAlaPheIleAlaThrSerSerA : 210 !:!!!!:|||:!:!!! ! !|||!!.:!!:!!!.! !:!: ! !.!!! !. ThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleT 217698 : ACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCA : 217757 211 : laAlaGlyAlaPheSerLeuAlaThrValPheAlaSerHisAlaLeuGlyGlnLeuAs : 229 !!:!!!.!|||! !|||||||||.!!!.!|||||| !||||||! !||||||:!!.! hrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGl 217758 : CGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGA : 217814 230 : nIleMetValThrTrpIleAsnGluPheValAsnGlnHisSerLysAspGlnAsnSer : 248 .:!::!!:!!!.!|||:!:.!..!.!!.:!!:!! .!!!:!! .!.! ||| uValLeuMetAsnTrpLeuGlnHisLeuIleAsp------GlyArgAlaAspMetSer 217815 : GGTGTTGATGAACTGGCTGCAACATTTAATCGAC------GGTAGAGCGGATATGAGC : 217865 249 : AsnAlaArgAlaAsnLysIleGlyValIleValGluHisHisLeuArgAlaLeuSerL : 268 :!!.!! !! !..!!:!|||!.! !||||||...!!.|||:!!||| !|||!.!! AspThrValAspGlyArgIleAlaSerIleValSerGlnHisValArgIleLeuLysC 217866 : GATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTAAAGT : 217925 269 : euIleAlaArgIleGluArgIleMetSerProIleCysPheMetGluMetPhe{Ly} : 286 !:!! ! !|||! !! ! |||! ! !! !!::.!.:!! !.!.{||} ysValArg***IleValGlyGluCysSerLeuCysPheTrpPheGlnGlyMet{Ly}- 217926 : GTGTAAGATAGATCGTTGGTGAATGCTCGCTTTGTTTTTGGTTTCAGGGGATG{AA}t : 217981 287 : >>>> Target Intron 1 >>>> {s}CysMetLeuGlyMetGlyMetProSer : 295 1305 bp {|} ::: :::...::: ... + ++{s}LysTyrIleTyrValAsnLeuTyrLys 217982 : t.........................ag{a}aaatatatttacgttaatttgtataaa : 219311 296 : TyrTyrIleLeuAlaGluTrpSerGluHisAsnIleGlnAsnIleAlaAlaTyrValM : 315 ::: !||||||!.!..!:!!:!!:!! !!:! !!.!.!!|||:!!! PheGluTyrGln***GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleI 219312 : tttgaatatcaatAGGAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCA : 219371 316 : etIleIleIleSerMetThrCysAsnIlePheLeuValCysTyrIleGlyGluIleIl : 334 !::!!:!!||||||:!:||| |||||||||::: ||||||||||||||||||:! leLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleVa 219372 : TTCTACTTATATCCCTcactttcaacattttcatattttgctaCATAGGAGAGATCGT : 219428 335 : eMetGluLys >>>> Target Intron 2 >>>> CysLysLysIleGlyAspM : 344 ! |||:!: 73 bp |||:::|||||||||:::| lAlaGluGln++ ++CysArgLysIleGlyGluM 219429 : TGCTGAACAggt.........................agTGtaggaaaattggagaaa : 219531 345 : etValTyrMetAlaAspTrpHisHisLeuProAspGlnAspIleIleAsnLeuIleMe : 363 || !|||||| !!!:|||:!!!..||| !!! :!! ! ! :!! !:!!:! etSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLe 219532 : tgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTT : 219588 364 : tIleIleSerArgSerSerMetGluValLysIleThrAlaGlyLysIleIleAspMet : 382 !! !|||:!!! !|||!:! ..!:!!|||:!:|||||||||!!.!!::!!!!::!! uThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeu 219589 : GACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTG : 219645 383 : SerValLeuThrPheAlaAsnIleValLysThrValPhe : 395 |||:!! !||||||.!!:!!:!: :::||| SerIleSerThrPheThrAspValSerIleLysLeuPhe 219646 : TCTATCAGCACTTTTACCGACGTGAGtatcaaattattc : 219686 vulgar: gi|350412835|ref|XP_003489780.1| 18 395 . KQ414889.1 217177 219686 + 513 M 130 390 G 0 3 M 17 51 G 0 3 M 75 225 G 2 0 M 43 129 S 0 2 5 0 2 I 0 1301 3 0 2 S 1 1 M 51 153 5 0 2 I 0 69 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217178 219686 513 + . gene_id 8 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217178 217980 . + . KQ414889.1 exonerate:protein2genome:local exon 217178 217980 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 217981 217982 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 217981 219285 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219284 219285 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219286 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219286 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219686 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219686 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217178 219686 513 + . alignment_id 8 ; Query gi|350412835|ref|XP_003489780.1| ; Align 217178 19 390 ; Align 217571 149 51 ; Align 217625 166 225 ; Align 217850 243 129 ; Align 219287 287 153 ; Align 219513 338 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 503 Query range: 1 -> 276 Target range: 236804 -> 237626 2 : ThrAspAspProValThrValGluArgLysPheGlySerLeuSerGluTyrSerIleG : 21 !.!||| ! !!|||..!..!|||! !!!..!. !:!! !|||!!:||||||:!!| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuG 236805 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCC : 236862 22 : lnValAsnArgTrpIleLeuLysProIleGlyAlaTrpProSerSerAsnSerThrTh : 40 || !||||||||| :!!||| !||||||.!!||||||..!! !:::||| lnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSer----- 236863 : AGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCG----- : 236916 41 : rAsnArgGluLysPheMetSerTrpIleLeuAsnValIleCysTrpCysPheSerLeu : 59 |||! !|||!:! !!!:||| ! ||||||||||||||||||!:: ! ! !||| -AsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeu 236917 : -AACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTA : 236970 60 : PheThrIleIleProGlyValLeuAsnIleLeuLeuGluLysGluAspLeuTyrLeuL : 79 |||:!!||||||||| !! !|||:!!:!!:!!|||||||||! ! !!!!||| !| PheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrL 236971 : TTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGA : 237030 80 : ysLeuLysMetPheGlyProLeuSerHisTrpCysValGlyGlyPheAsnTyrAlaVa : 98 ||:!!|||!!:.!!||| !!|||||||||||| !! !! !.!!!:!|||.!!:! ysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMe 237031 : AAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCAT : 237087 99 : lLeuLeuLeuArgGlnGlyAspIleHisTyrCysIleLysHisIleArgThrAspTrp : 117 !||||||||||||!:: ! !|||!.!:!!! !.!!!!.|||!!:..!||||||||| tLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrp 237088 : GCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGG : 237144 118 : LysThrIleThrArgLeuGluAspGlnArgIleMetLeuLysAsnAlaLysLeuGlyA : 137 !:!|||! |||||| ||| :::...:::||||||||| !!||||||!!!.!!| ArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerA 237145 : AGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTC : 237204 138 : rgTyrIleAlaCysPheCysAlaAlaPheMetHisGlySerValPheCysThrCysLe : 156 ||||| ||| !! !|||.!! !|||!!:||||||.!!:!!.!! ! !|||:! rgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysVa 237205 : GATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGT : 237261 157 : uValLeuGlyAlaPheLysArgThrIleGluValArgAsnGluThrIleLeuValTyr : 175 !:!! !!.!:!! !! !! !..!:!!! !||| !!|||:!!|||! :!!:!! ! lMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLeuArg 237262 : TATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGC : 237318 176 : ThrLeuProCysProAlaTyrLys<-><->LeuProValGlnThrAsnProGlyHisA : 193 ..!||||||! ||| !|||||| |||||||||.!.|||||| !! !:!!| ValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnA 237319 : GTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACG : 237378 194 : spIleIleLeuGlyThrGlnPheLeuSerAlaPheIleAlaThrSerSerAlaAlaGl : 212 |||||:!!:!! !:!!||||||||||||!.!|||||||||!.!!:!|||||| !.! spIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSe 237379 : ACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAG : 237435 213 : yAlaPheSerLeuAlaThrValPheAlaSerHisAlaLeuGlyGlnLeuAsnIleMet : 231 !!.!.!.||||||.!!!:!!.!.!..!!|||||||||! !|||||||||!:!:!::!: rValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValVal 237436 : TGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTT : 237492 232 : ValThrTrpIleAsnGluPheValAsnGlnHisSerLysAspGlnAsnSerAsnAlaA : 251 :!! !! !|||.!.!!:||||||!:!:!! :!!!:! !::!...!.!:!!! !! MetLeuSerIleGluAspPheValSerGlu---AlaArgArgArgGlyLysAspAspH 237493 : ATGTTGTCGATCGAAGATTTTGTGAGTGAA---GCGAGACGCAGAGGGAAGGACGATC : 237549 252 : rgAlaAsnLysIleGlyValIleValGluHisHisLeuArgAlaLeuSerLeuIleAl : 270 .! !:!!:!!||| !..!|||||||||.!.|||||||||!.!|||!.!! !:!!.. isPheAspGluIleProThrIleValGluGluHisLeuArgValLeuLys***ValCy 237550 : ATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAGTATG : 237606 271 : aArgIleGluArgIleMet : 276 ! !:!:!!: !|||:!! sLeuLeuAspLeuIleLeu 237607 : TTTGTTGGATTTGATTTTG : 237626 vulgar: gi|350412835|ref|XP_003489780.1| 1 276 . KQ414889.1 236804 237626 + 503 M 37 111 G 2 0 M 143 429 G 0 6 M 58 174 G 1 0 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236805 237626 503 + . gene_id 9 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236805 237626 . + . KQ414889.1 exonerate:protein2genome:local exon 236805 237626 . + . insertions 6 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 236805 237626 503 + . alignment_id 9 ; Query gi|350412835|ref|XP_003489780.1| ; Align 236805 2 111 ; Align 236916 41 429 ; Align 237351 184 174 ; Align 237525 243 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 464 Query range: 16 -> 270 Target range: 232456 -> 233218 17 : GluTyrSerIleGlnValAsnArgTrpIleLeuLysProIleGlyAlaTrpProSerS : 36 |||||||||||||||||||||||||||.!!|||! !|||!!:|||||||||||| !! GluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgV 232457 : GAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTG : 232514 37 : erAsnSerThrThrAsnArgGluLysPheMetSerTrpIleLeuAsnValIleCysTr : 55 !!....!|||:!!!.. !:!!:!!.!.:!::!! :!:|||!..:!!! !||| alThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHi 232515 : TTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCA : 232571 56 : pCysPheSerLeuPheThrIleIleProGlyValLeuAsnIleLeuLeuGluLysGlu : 74 ! !.!.! !:!!! !:!!|||:!!||| !!:!!||| !||||||!!!||| ! ! sSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThr 232572 : TTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACG : 232628 75 : AspLeuTyrLeuLysLeuLysMetPheGlyProLeuSerHisTrpCysValGlyGlyP : 94 ..!||| ! !!:!:!!||| .!!||||||:!!||||||!:: :!!|||! !! SerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluL 232629 : AGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAAT : 232688 95 : heAsnTyrAlaValLeuLeuLeuArgGlnGlyAspIleHisTyrCysIleLysHisIl : 113 !.||||||..! !|||||| !!:! !..!||||||! !||||||:!::!!!!.:! euAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnVa 232689 : TGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGT : 232745 114 : eArgThrAspTrpLysThrIleThrArgLeuGluAspGlnArgIleMetLeuLysAsn : 132 :!:! !||||||::!!.!:!!! !!:!! !! !!!:: !:!:|||||||||||| lLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsn 232746 : GAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAAC : 232802 133 : AlaLysLeuGlyArgTyrIleAlaCysPheCysAlaAlaPheMetHisGlySerValP : 152 |||||||||||||||! |||||||||.!!..!||| !! !|||||| !.!!||| AlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValG 232803 : GCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCG : 232862 153 : heCysThrCysLeuValLeuGlyAlaPheLysArgThrIleGluValArgAsnGluTh : 171 !! ! ! :!!||| !||| ! !! !!!!|||.!! ! ||| !!||||||!: lySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSe 232863 : GCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAG : 232919 172 : rIleLeuValTyrThrLeuProCysProAlaTyrLysLeuProValGlnThr<-><-> : 189 ! !! !:!!||| !!||||||||| !! !|||! ! !! !:!!.!.||| rTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPhe 232920 : TTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTC : 232976 190 : AsnProGlyHisAspIleIleLeuGlyThrGlnPheLeuSerAlaPheIleAlaThrS : 208 !:!||| !:!!!!:|||!!:!!!! ! !|||! !||||||!.!||||||!.!!.!| SerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnS 232977 : AGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACT : 233036 209 : erSerAlaAlaGlyAlaPheSerLeuAlaThrValPheAlaSerHisAlaLeuGlyGl : 227 || !.!!!.!||||||! !.!!|||!.!.!!|||.!.|||! !||||||! !||||| erValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGl 233037 : CCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACA : 233093 228 : nLeuAsnIleMetValThrTrpIleAsnGluPheValAsnGlnHisSerLysAspGln : 246 |||||||:!::!!:!!:!! :!::!!!!:!!.|||:!! :!!|||! ||| nLeuAsnValValMetSerLysLeuAspAspLeuValAsp------AlaLysGlyGln 233094 : GCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGAC------GCGAAAGGGCAG : 233144 247 : AsnSerAsnAlaArgAlaAsnLysIleGlyValIleValGluHisHisLeuArgAlaL : 266 .!...!!..!.! ! !!..|||:!!||| !!|||||||||||||||||||||.!!| GluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrL 233145 : GAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACAT : 233204 267 : euSerLeuIleAla : 270 ||!!!! !:!::!! euArgTyrLeuSer 233205 : TAAGGTATTTGTCT : 233218 vulgar: gi|350412835|ref|XP_003489780.1| 16 270 . KQ414889.1 232456 233218 + 464 M 172 516 G 0 6 M 52 156 G 2 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232457 233218 464 + . gene_id 10 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232457 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232457 233218 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 232457 233218 464 + . alignment_id 10 ; Query gi|350412835|ref|XP_003489780.1| ; Align 232457 17 516 ; Align 232979 189 156 ; Align 233135 243 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 394 Query range: 7 -> 274 Target range: 221348 -> 222149 8 : ValGluArgLysPheGlySerLeuSerGluTyrSerIleGlnValAsnArgTrpIleL : 27 |||||| ! ! !:! !!!! ! !:!!! |||:!:|||:!!!:!|||||||||| ValGluTyrAspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleL 221349 : GTTGAATACGATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCT : 221406 28 : euLysProIleGlyAlaTrpProSerSerAsnSerThrThrAsnArgGluLysPheMe : 46 ||||||||||||||!.!||||||!:!||| !!:!! !:!!!.. !|||!:!!:!:! euLysProIleGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLe 221407 : TGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCT : 221463 47 : tSerTrpIleLeuAsnValIleCysTrpCysPheSerLeuPheThrIleIleProGly : 65 :! !|||:!::!!||||||:!!|||!:: !!.!.! ! !||| !:!::!!||| !! uTyrTrpLeuIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCys 221464 : CTACTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGC : 221520 66 : ValLeuAsnIleLeuLeuGluLysGluAspLeuTyrLeuLysLeuLysMetPheGlyP : 85 !||| !!:!::!!|||||| !||||||:!!||| !!:!:!!|||:!!!!.|||| SerLeuTyrValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyP 221521 : AGCCTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTC : 221580 86 : roLeuSerHisTrpCysValGlyGlyPheAsnTyrAlaValLeuLeuLeuArgGlnGl : 104 |||||||| !!! :!!!.! !.!.!!.||| !:!!|||:!!||| !:!!.. roLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAs 221581 : CGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAA : 221637 105 : yAspIleHisTyrCysIleLysHisIleArgThrAspTrpLysThrIleThrArgLeu : 123 !||||||!.! ! ||||||:!!!.!|||..! !|||||||||!.!|||||| !! ! nAspIleArgGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSer 221638 : CGACATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCC : 221694 124 : GluAspGlnArgIleMetLeuLysAsnAlaLysLeuGlyArgTyrIleAlaCysPheC : 143 :!!|||:!! !||||||:!!:!!||||||! !!!|||||| :!: ! .!!| LysAspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleC 221695 : AAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCT : 221754 144 : ysAlaAlaPheMetHis<->GlySerValPhe<->CysThrCysLeuValLeuGlyAl : 160 ||.!! !||||||:!! ||| |||||| !..!:!! !!!!.!!!. ysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerVa 221755 : GCACATTTTTCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGT : 221811 161 : aPheLysArgThrIleGluValArgAsnGluThrIleLeuValTyrThrLeuProCys : 179 ! !|||! ! !! :!!! ! ||| |||...::: ! ..!!!!|||! ! lGlyLysIleProAlaGlnAspValAsnValThrPheIleProMetValPheProPhe 221812 : GGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTC : 221868 180 : ProAlaTyrLysLeuProValGlnThrAsnProGlyHisAspIleIleLeuGlyThrG : 199 !! !!:!! :!! !..!!:! !!:!|||! !:!!!!:|||:!:!!!..! !| SerArgPheIleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuG 221869 : TCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTC : 221928 200 : lnPheLeuSerAlaPheIleAlaThrSerSerAlaAlaGlyAlaPheSerLeuAlaTh : 218 ||.!!:!!:!!!.! !:!: ! !|||! !.!!:!!!.!|||! !||||||!.!.! lnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAl 221929 : AAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGC : 221985 219 : rValPheAlaSerHisAlaLeuGlyGlnLeuAsnIleMetValThrTrpIleAsnGlu : 237 !:!!|||||| !||||||! !||||||:!!.!.:!::!!:!!!:!|||:!:!!..!. aMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHis 221986 : TATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACAT : 222042 238 : PheValAsnGlnHisSerLysAspGlnAsnSerAsnAlaArgAlaAsnLysIleGlyV : 257 !!.:!!||| !..:!! ! |||!:! ! !||| !:!|||!.! LeuIleAsnGlyArgAlaAspMetCysAsnAsnValAspArg------ArgIleAlaL 222043 : TTGATCAACGGCCGGGCGGATATGTGTAACAACGTGGATAGG------AGAATAGCGA : 222096 258 : alIleValGluHisHisLeuArgAlaLeuSerLeuIleAlaArgIleGluArg : 274 !||||||.!.!!.|||:!!||| !|||..!! !:!! ! !!|||! ||| ysIleValAsnGlnHisValArgIleLeuGlnTyrValArgCysIleGlyArg 222097 : AGATTGTGAATCAACACGTTCGAATATTGCAGTATGTACGTTGTATCGGCCGt : 222149 vulgar: gi|350412835|ref|XP_003489780.1| 7 274 . KQ414889.1 221348 222149 + 394 M 141 423 G 0 3 M 4 12 G 0 3 M 99 297 G 2 0 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221349 222149 394 + . gene_id 11 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221349 222149 . + . KQ414889.1 exonerate:protein2genome:local exon 221349 222149 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 221349 222149 394 + . alignment_id 11 ; Query gi|350412835|ref|XP_003489780.1| ; Align 221349 8 423 ; Align 221775 149 12 ; Align 221790 153 297 ; Align 222087 254 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 359 Query range: 5 -> 272 Target range: 226894 -> 227695 6 : ValThrValGluArgLysPheGlySerLeuSerGluTyrSerIleGlnValAsnArgT : 25 :!!.!!..!|||!.! ! !:! !..!! !! !.!. |||||||||:!!||||||| LeuAlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgT 226895 : CTCGCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTT : 226952 26 : rpIleLeuLysProIleGlyAlaTrpProSerSerAsnSerThrThrAsnArgGluLy : 44 ||:!:|||||||||:!!||| !||||||||||||..!!.!!:!:!!...! !! !!: rpLeuLeuLysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGlyAr 226953 : GGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAG : 227009 45 : sPheMetSerTrpIleLeuAsnValIleCysTrpCysPheSerLeuPheThrIleIle : 63 !! !.!.||||||:!::!!..! !!:!!|||!::....!.! ! !||| !:!::!! gCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuVal 227010 : ATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTC : 227066 64 : ProGlyValLeuAsnIleLeuLeuGluLysGluAspLeuTyrLeuLysLeuLysMetP : 83 !!.!!! !||| !!:!::!!|||||| !:!!! ! !||| !! !|||||||||. SerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetI 227067 : TCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGA : 227126 84 : heGlyProLeuSerHisTrpCysValGlyGlyPheAsnTyrAlaValLeuLeuLeuAr : 102 !!||||||:!!||| !!::...:!!..! !.!!!!.|||:!!:!!||| !!!!!. leGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHi 227127 : TCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCA : 227183 103 : gGlnGlyAspIleHisTyrCysIleLysHisIleArgThrAspTrpLysThrIleThr : 121 !:!!! !||||||! ! ! |||:!!:!!!..|||!:! !|||||||||!.!|||! ! sGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArg 227184 : CGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGA : 227240 122 : ArgLeuGluAspGlnArgIleMetLeuLysAsnAlaLysLeuGlyArgTyrIleAlaC : 141 !|||||||||::!!.!:!:|||:!!! ! !!||| ! ! !|||||| ! :!: ! TyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleT 227241 : TACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCA : 227300 142 : ysPheCysAlaAlaPheMetHisGlySer<-><->ValPheCysThrCysLeuValLe : 158 !.!!|||.!! !|||:!: !...||| ||| ! ! !:!! !:! hrIleCysThrPhePheValPheSerSerPheValPhePheTyrIleValValProIl 227301 : CTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTAT : 227357 159 : uGlyAlaPheLysArgThrIleGluValArgAsnGluThrIleLeuValTyrThrLeu : 177 !..!||| !.. !.!!! |||! ! !!|||.!.!:! !:!! ! !!!!! eAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPhe 227358 : CAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTT : 227414 178 : ProCysProAlaTyrLysLeuProValGlnThrAsnProGlyHisAspIleIleLeuG : 197 |||! !||| ! !! ! !|||!:: !!:!||| !:!!!!:|||.!!!!!. ProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheS 227415 : CCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTT : 227474 198 : lyThrGlnPheLeuSerAlaPheIleAlaThrSerSerAlaAlaGlyAlaPheSerLe : 216 .!..!||||||:!!!!!!.!.!!:!: ! !.!! !.!!:!!!.!|||! !|||:! erValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMe 227475 : CGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTAT : 227531 217 : uAlaThrValPheAlaSerHisAlaLeuGlyGlnLeuAsnIleMetValThrTrpIle : 235 !|||.!!:!!.!!||| !||||||! !||||||:!!.!.:!::!!|||:!!|||:!: tAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeu 227532 : GGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTG : 227588 236 : AsnGluPheValAsnGlnHisSerLysAspGlnAsnSerAsnAlaArgAlaAsnLysI : 255 ....!.!!.:!!:!! .!!!:!! .!.! |||!!..!!! !! !:!!!:!| GlyHisLeuIleAsp------GlyArgAlaAspMetSerLysThrLeuAspAspArgI 227589 : GGACATTTGATCGAC------GGCAGAGCGGATATGAGCAAAACACTGGATGATAGAA : 227642 256 : leGlyValIleValGluHisHisLeuArgAlaLeuSerLeuIleAlaArgIle : 272 ||!.! !|||||| ||||||:!!||| !|||!.!! !:!!.!! !!||| leAlaSerIleValThrHisHisValArgIleLeuLysCysValThrCysIle 227643 : TCGCTAGCATCGTCACTCACCACGTTCGAATATTGAAGTGTGTAACGTGTATC : 227695 vulgar: gi|350412835|ref|XP_003489780.1| 5 272 . KQ414889.1 226894 227695 + 359 M 145 435 G 0 6 M 90 270 G 2 0 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226895 227695 359 + . gene_id 12 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226895 227695 . + . KQ414889.1 exonerate:protein2genome:local exon 226895 227695 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 226895 227695 359 + . alignment_id 12 ; Query gi|350412835|ref|XP_003489780.1| ; Align 226895 6 435 ; Align 227336 151 270 ; Align 227606 243 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 339 Query range: 18 -> 269 Target range: 212875 -> 213628 19 : SerIleGlnValAsnArgTrpIleLeuLysProIleGlyAlaTrpProSerSerAsnS : 38 |||||| ! !|||||||||:!!|||||||||! ||| !||||||..!!.!::!! SerIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspLysSerT 212876 : agtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCT : 212933 39 : erThrThrAsnArgGluLysPheMetSerTrpIleLeuAsnValIleCysTrpCysPh : 57 !..!:!! ! !|||||| !!!::!! ! :!::!!|||..!:!!|||!:: !!!! yrValSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLe 212934 : ACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTT : 212990 58 : eSerLeuPheThrIleIleProGlyValLeuAsnIleLeuLeuGluLysGluAspLeu : 76 .! ! !!:! !:!!|||||| !! !||| !!:!:!!!|||!!: !|||:::::: uIleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGluAsnIle 212991 : GATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatata : 213047 77 : TyrLeuLysLeuLysMetPheGlyProLeuSerHisTrpCysValGlyGlyPheAsnT : 96 ::: ::::!!:!!:!!|||||| !!!!:!! !!! !.!!.! !!::!!.| PheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysT 213048 : tttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGT : 213107 97 : yrAlaValLeuLeuLeuArgGlnGlyAspIleHisTyrCysIleLysHisIleArgTh : 115 || ! !|||:!!|||!.! ! !||||||!.! |||:!!:!!|||!!:!:! yrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMetLysTy 213108 : ATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATA : 213164 116 : rAspTrpLysThrIleThrArgLeuGluAspGlnArgIleMetLeuLysAsnAlaLys : 134 !|||||||||!.!||||||!.! !||||||:!!..!|||||| ! !||||||!.. rAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSer 213165 : TGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGC : 213221 135 : LeuGlyArgTyrIleAlaCysPheCysAlaAlaPheMetHis<->GlySerValPheC : 153 !!!|||!:! |||!.! .!!|||||| !||||||:!! |||! !..!|||! PheGlyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheThrPheT 213222 : TTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTT : 213281 154 : ysThrCysLeuVal<->LeuGlyAlaPheLysArgThrIleGluValArgAsnGluTh : 171 ! ! !:!!||| :!!.!!||| !|||! !..! |||! !! !|||! !|| yrPheLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAsnValTh 213282 : ATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGAC : 213338 172 : rIleLeuValTyrThrLeuProCysProAlaTyrLysLeuProValGlnThrAsnPro : 190 |.!! ! ! ..!:!!||| ! !! !!:!! :!! !|||!:! !!:!||| rPheArgGlnMetValValProValSerArgPheIleValAspValArgTyrSerPro 213339 : ATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCT : 213395 191 : GlyHisAspIleIleLeuGlyThrGlnPheLeuSerAlaPheIleAlaThrSerSerA : 210 ! !:!!!!:|||.!!!!! !! !|||.!!:!!:!!!.! ! :!: ! !:!!! !| ValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleA 213396 : GTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTG : 213455 211 : laAlaGlyAlaPheSerLeuAlaThrValPheAlaSerHisAlaLeuGlyGlnLeuAs : 229 ||!.!! !|||! !|||||||||.!!||||||||| !||||||! !||||||:!!.. laValValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGl 213456 : CGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGG : 213512 230 : nIleMetValThrTrpIleAsnGluPheValAsnGlnHisSerLysAspGlnAsnSer : 248 !|||:!!:!!!:!|||:!:.!..!.!!.:!!:!! ... :!!|||..!!:!!.! yIleLeuMetSerTrpLeuGluHisLeuIleAspGlyArg---GluAspMetSerLys 213513 : CATTTTGATGAGCTGGCTGGAACATTTGATAGACGGTAGA---GAGGATATGAGCAAG : 213566 249 : AsnAlaArgAlaAsnLysIleGlyValIleValGluHisHisLeuArgAlaLeuSerL : 268 |||!.! ! !:!!!:!|||!.!|||||||||.!.!!.|||:!!||| !|||!.!! AsnVal---AspAspArgIleAlaValIleValAsnGlnHisValArgIleLeuLysT 213567 : AATGTG---GACGACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTGAAGT : 213623 269 : euIle : 269 !:!: rpVal 213624 : GGGTG : 213628 vulgar: gi|350412835|ref|XP_003489780.1| 18 269 . KQ414889.1 212875 213628 + 339 M 130 390 G 0 3 M 9 27 G 0 3 M 85 255 G 1 0 M 7 21 G 1 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212876 213628 339 + . gene_id 13 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212876 213628 . + . KQ414889.1 exonerate:protein2genome:local exon 212876 213628 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 212876 213628 339 + . alignment_id 13 ; Query gi|350412835|ref|XP_003489780.1| ; Align 212876 19 390 ; Align 213269 149 27 ; Align 213299 158 255 ; Align 213554 244 21 ; Align 213575 252 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 337 Query range: 300 -> 405 Target range: 277371 -> 277842 301 : GluTrpSerGluHisAsnIleGlnAsnIleAlaAlaTyrValMetIleIleIleSerM : 320 |||||||||!!: !:!!:!!|||!..!!:.!!.!!:!! !!||||||:!!||||||| GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 321 : etThrCysAsnIlePheLeuValCysTyrIleGlyGluIleIleMetGluLys >>> : 338 || ||||||||| !|||||||||||||||||||||:!!! |||:!! etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 339 : > Target Intron 1 >>>> CysLysLysIleGlyAspMetValTyrMetAlaA : 349 72 bp |||||||||:!!|||!!::!!|||||||||.!!: ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 350 : spTrpHisHisLeuProAspGlnAspIleIleAsnLeuIleMetIleIleSerArgSe : 368 !!|||:!!:!!|||||||||:!!||||||:!!||||||:!!:!:|||||||||||||| snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 369 : rSerMetGluValLysIleThrAlaGlyLysIleIleAspMetSerValLeuThrPhe : 387 ||||::: :::||||||||||||||||||:::|||...|||||||||! !|||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 388 : AlaAsn >>>> Target Intron 2 >>>> IleValLysThrValPheAlaTy : 397 !.!:!! 84 bp :!!:!!||||||..!|||||||| GlyAsp++ ++ValIleLysThrThrPheAlaTy 277703 : GGCGATgt.........................agGTAATAAAAACCACTTTCgcgta : 277816 398 : rLeuAsnMetLeuCysGlnThrThr : 405 |||||||:::||| !||||||||| rLeuAsnIleLeuArgGlnThrThr 277817 : tttaaatattctacgCCAAACGACG : 277842 vulgar: gi|350412835|ref|XP_003489780.1| 300 405 . KQ414889.1 277371 277842 + 337 M 37 111 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277842 337 + . gene_id 14 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277842 337 + . alignment_id 14 ; Query gi|350412835|ref|XP_003489780.1| ; Align 277372 301 111 ; Align 277555 338 156 ; Align 277795 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 290 Query range: 297 -> 390 Target range: 264528 -> 264885 298 : IleLeuAlaGluTrpSerGluHisAsnIleGlnAsnIleAlaAlaTyrValMetIleI : 317 :!!!!! !||||||..!...|||:::|||||||||:::..!.!!||| !!||||||: ValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleL 264529 : GTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATAC : 264586 318 : leIleSerMetThrCysAsnIlePheLeuValCysTyrIleGlyGluIleIleMetGl : 336 !:||||||||| ! !!||||||||||||:!!||||||||||||||||||:!:! || euIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGl 264587 : TGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGA : 264643 337 : uLys >>>> Target Intron 1 >>>> CysLysLysIleGlyAspMetValT : 346 |::: 78 bp |||||||||:!!|||!!::!!|||| uGln++ ++CysLysLysValGlyGluValValT 264644 : Gcaggt.........................agTGTAAGAAAGTTGGTGAGGTGGTTT : 264751 347 : yrMetAlaAspTrpHisHisLeuProAspGlnAspIleIleAsnLeuIleMetIleIl : 365 |||||:!!:!!|||:!!:!!|||||| !!:!!||||||:!!:!!||||||:!:||||| yrMetSerAsnTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLeuIleIl 264752 : ACATGTCGAATTGGTATTACTTACCCTACAAAGATATCCTTGATCTGATTCTCATCAT : 264808 366 : eSerArgSerSerMetGluValLysIleThrAlaGlyLysIleIleAspMetSerVal : 384 |! !|||||||||:!!! ! !!|||.!!|||||||||||||||:!! !!||||||:!! eLeuArgSerSerValValPheLysPheThrAlaGlyLysIleLeuHisMetSerMet 264809 : TTTAAGATCCAGCGTGGTGTTTAAATTCACCGCTGGAAAGATACTTCACATGTCCATG : 264865 385 : LeuThrPheAlaAsnIle : 390 ! !||||||::!:!!:!! TyrThrPheSerAspVal 264866 : TACACATTCAGTGACGTA : 264885 vulgar: gi|350412835|ref|XP_003489780.1| 297 390 . KQ414889.1 264528 264885 + 290 M 40 120 5 0 2 I 0 74 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264529 264885 290 + . gene_id 15 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264529 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264529 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264726 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264529 264885 290 + . alignment_id 15 ; Query gi|350412835|ref|XP_003489780.1| ; Align 264529 298 120 ; Align 264727 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 276 Query range: 300 -> 403 Target range: 254071 -> 254561 301 : GluTrpSerGluHisAsnIleGlnAsnIleAlaAlaTyrValMetIleIleIleSerM : 320 ||||||!!!||| !:!! !|||! :!! !.!!|||:!!:!:! !:!!:!!:!!: GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaV 254072 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTG : 254129 321 : etThrCysAsnIlePheLeuValCysTyrIleGlyGluIleIleMetGluLys >>> : 338 !:..! ||| ||||||:::|||||||||.!!!!:! :!:! |||:!! alValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 254130 : TTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt... : 254185 339 : > Target Intron 1 >>>> CysLysLysIleGlyAspMetValTyrMetAlaA : 349 92 bp ||| !|||:!!|||!!::!!|||||||||.!!| ++CysLeuLysValGlyGluValValTyrMetThrA 254186 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 254308 350 : spTrpHisHisLeuProAspGlnAspIleIleAsnLeuIleMetIleIleSerArgSe : 368 |||||:!!:!!||||||.!.::! |||:!!:!!||||||:!!||||||!!!||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSe 254309 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATC : 254365 369 : rSerMetGluValLysIleThrAlaGlyLysIleIleAspMetSerValLeuThrPhe : 387 |!:!:!!! |||:!!||||||||||||||||||... ||||||:!!! !|||||| rAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPhe 254366 : GAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTC : 254422 388 : AlaAsn >>>> Target Intron 2 >>>> IleValLysThrValPheAlaTy : 397 !.!:!! 89 bp :!!|||||||||! !|||||||| GlyAsp++ ++ValValLysThrGlyPheAlaTy 254423 : GGCGATgt.........................agGTAGTAAAAACAGGATTCGCCTA : 254541 398 : rLeuAsnMetLeuCysGln : 403 ||||||||||||||||||| rLeuAsnMetLeuCysGln 254542 : CTTGAATATGCTTTGTCAA : 254561 vulgar: gi|350412835|ref|XP_003489780.1| 300 403 . KQ414889.1 254071 254561 + 276 M 37 111 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254072 254561 276 + . gene_id 16 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254072 254182 . + . KQ414889.1 exonerate:protein2genome:local exon 254072 254182 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254183 254184 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254183 254274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254273 254274 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254275 254430 . + . KQ414889.1 exonerate:protein2genome:local exon 254275 254430 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254431 254432 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254431 254519 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 254518 254519 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254520 254561 . + . KQ414889.1 exonerate:protein2genome:local exon 254520 254561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254072 254561 276 + . alignment_id 16 ; Query gi|350412835|ref|XP_003489780.1| ; Align 254072 301 111 ; Align 254275 338 156 ; Align 254520 390 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 260 Query range: 16 -> 241 Target range: 289732 -> 290410 17 : GluTyrSerIleGlnValAsnArgTrpIleLeuLysProIleGlyAlaTrpProSerS : 36 ...|||!!!.!!:!!:!! !!.!||||||||||||||||||||| !!::|||! ! ArgTyrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrProPheV 289733 : CGTTACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCG : 289790 37 : erAsnSer<->ThrThrAsnArgGluLysPheMetSerTrpIleLeuAsnValIleCy : 54 ! !||| .!!!:!!..||||||::! !||| !:!:|||! !:!!:!!|| alPheSerArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLeuValCy 289791 : TCTTTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATG : 289847 55 : sTrpCysPheSerLeuPheThrIleIleProGlyValLeuAsnIleLeuLeuGluLys : 73 |!! ! .!! !! !|||! !|||:!!||| ! !! !:!!:!!|||!!!... ! sCysSerIleLeuGlnPheIleIleValProPheSerHisHisValLeuPheSerAsp 289848 : TTGCTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGAC : 289904 74 : GluAspLeuTyrLeuLysLeuLysMetPheGlyProLeuSerHisTrpCysValGlyG : 93 .!.|||:!! !! ! :!!|||! .!!|||||||||!!! !!! ! ..! ! AsnAspMetAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuThrThrP 289905 : AACGACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGT : 289964 94 : lyPheAsnTyrAlaValLeuLeuLeuArgGlnGlyAspIleHisTyrCysIleLysHi : 112 !|||!!.|||..! !!!! !:!!!:! ..!! ||| ! !|||:!:||||| hePheLysTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysValLysHi 289965 : TCTTCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACA : 290021 113 : sIleArgThrAspTrpLysThrIleThrArgLeuGluAspGlnArgIleMetLeuLys : 131 ||||..!! !|||||||||! !:!: ! ! !!!: !!!:: !|||||||||!:! sIleGluArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMetLeuArg 290022 : CATCGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGA : 290078 132 : AsnAlaLysLeuGlyArgTyrIleAlaCysPheCysAlaAlaPheMetHisGlySerV : 151 !!!.!! !:!!.!!||| !!:!! ! .!.|||||| !|||:!!:!! !.!!! TyrValThrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyG 290079 : TACGTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTG : 290138 152 : alPheCysThrCysLeuValLeuGlyAlaPheLysArgThrIleGluValArgAsnGl : 170 !.!.! ! ! ! !|||:!! ! !|||..!!:!! !! !! ! ! !!|||! lyLeuSerTyrAsnThrValIleProLeuPheSerLysLysSerValAsnGlyAsnVa 290139 : GTCTGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGGTAACGT : 290195 171 : uThrIleLeuValTyrThrLeuProCysProAlaTyrLysLeuProValGlnThrAsn : 189 !|||||| ! ! |||! !||| !! !! ! ! !!! !||||||! !!:! lThrIleArgProLeuThrTyrProGlyTyrGluGluPhePheAspValGlnLysSer 290196 : GACTATCAGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGT : 290252 190 : ProGlyHisAspIleIleLeuGlyThrGlnPheLeuSerAlaPheIleAlaThrSerS : 209 |||!.!:!!!!:|||:!!!!! !!! !!!.! !:!!! !!.!.!.|||.!!.!!!:!! ProAlaTyrGluIleValPheCysMetHisCysValTyrValMetIleThrAlaAsnI 290253 : CCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACA : 290312 210 : erAlaAlaGlyAlaPheSerLeuAlaThrValPheAlaSerHisAlaLeuGlyGlnLe : 228 !.!! !!.!|||!:!||||||.!!|||:!!||||||!!!|||.!!! !||||||:! leThrMetAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGlnIl 290313 : TCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGAT : 290369 229 : uAsnIleMetValThrTrpIleAsnGluPheValAsnGln : 241 !!!.|||.....!||| !!:!:.!.!!:.!...!!!.::! eLysIleGlnThrThrArgLeuGluAspLeuThrLysArg 290370 : TAAGATACAAACGACGCGGCTGGAGGATCTGACAAAGAGA : 290410 vulgar: gi|350412835|ref|XP_003489780.1| 16 241 . KQ414889.1 289732 290410 + 260 M 22 66 G 0 3 M 203 609 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289733 290410 260 + . gene_id 17 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289733 290410 . + . KQ414889.1 exonerate:protein2genome:local exon 289733 290410 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289733 290410 260 + . alignment_id 17 ; Query gi|350412835|ref|XP_003489780.1| ; Align 289733 17 66 ; Align 289802 39 609 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 252 Query range: 300 -> 395 Target range: 272836 -> 273191 301 : GluTrpSerGluHisAsnIleGlnAsnIleAlaAlaTyrValMetIleIleIleSerM : 320 ||||||!!!!!:|||:!!.!!|||!:!:!!.!!.!!||| !!||||||:!!||||||| GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 321 : etThrCysAsnIlePheLeuValCysTyrIleGly >>>> Target Intron 1 : 332 ||||| |||||||||:::||||||||||||||| 70 bp etThrPheAsnIlePheIleValCysTyrIleGly+- 272895 : TgacttttaacatttttatagtATGTTACATCGGCga..................... : 272932 333 : >>>> GluIleIleMetGluLysCysLysLysIleGlyAspMetValTyrMetAlaA : 349 ::: :::|||||||||||||||!!::!:|||||||||.!!: -+LysLysAsnSer***GlnCysLysLysIleGlyGluValValTyrMetThrA 272933 : ....cgaagaaaaattcttaacagtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 350 : spTrpHisHisLeuProAspGlnAspIleIleAsnLeuIleMetIleIleSerArgSe : 368 !!|||:!!:!!||||||! !:!!||||||:!!:!!||||||:!!||||||||||||!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 369 : rSerMetGluValLysIleThrAlaGlyLysIleIleAspMetSerValLeuThrPhe : 387 !|||:!:! !:!!|||||||||||||||!:!|||:!! !|||||||||! !|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 388 : AlaAsnIleValLysThrValPhe : 395 !.!:!!:!! ... :::||| GlyAspValArgSerGlnLeuPhe 273166 : GGCGATGTACgttctcaattattt : 273191 vulgar: gi|350412835|ref|XP_003489780.1| 300 395 . KQ414889.1 272836 273191 + 252 M 31 93 5 0 2 I 0 66 3 0 2 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273191 252 + . gene_id 18 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272929 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272930 272931 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 272930 272999 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 272998 272999 . + . intron_id 0 ; splice_site "cg" KQ414889.1 exonerate:protein2genome:local cds 273000 273191 . + . KQ414889.1 exonerate:protein2genome:local exon 273000 273191 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273191 252 + . alignment_id 18 ; Query gi|350412835|ref|XP_003489780.1| ; Align 272837 301 93 ; Align 273000 332 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 237 Query range: 16 -> 241 Target range: 204233 -> 204908 17 : GluTyrSerIleGlnValAsnArgTrpIleLeuLysProIleGlyAlaTrpProSerS : 36 ..!|||:!!! !!:: !! !:! !|||||| ! !:!!||||||||||||! ! ArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaTrpProIleP 204234 : AGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGTGGCCGATTC : 204291 37 : erAsnSerThrThrAsnArgGluLysPheMetSerTrpIleLeuAsnValIleCysTr : 55 !! !:!:!!:!! ! !!:!.!.:!: !! ! ||| !:!!|||:!! !:: roValAsnSerSerProPheThrArgLeuValArgArgIleGluHisValValThrTy 204292 : CAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGTAGTCACCta : 204348 56 : pCysPheSerLeuPheThrIleIleProGlyValLeuAsnIleLeuLeuGluLysGlu : 74 : ... ...... !|||:!!||||||:!!||| !!:!:!!!|||:!!:!!:!! rPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheLeuLysGluLys 204349 : tttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAG : 204405 75 : AspLeuTyrLeuLysLeuLysMetPheGlyProLeuSerHisTrpCysValGlyGlyP : 94 :!! ! ! :!!:::||||||!!:.!!||||||:!! !:!!!! !!:!! ! !| AsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSerIleGlnPheP 204406 : AACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCATACAGTTCT : 204465 95 : heAsnTyrAlaValLeuLeuLeuArgGlnGlyAspIleHisTyrCysIleLysHisIl : 113 ||!!.|||:!!|||:!!|||! !||| ! ! ! |||!!. ! !!:!:!!. !|| heLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSerLeuAsnThrIl 204466 : TCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGTTTGAACACCAT : 204522 114 : eArgThrAspTrpLysThrIleThrArgLeuGluAspGlnArgIleMetLeuLysAsn : 132 |||| !||||||! ! ! !||| ! |||:!!!:! !|||.!.! !..!!!. eArgArgAspTrpIleGluAlaThrAsp---GluAsnArgLeuIlePheArgSerLys 204523 : CAGACGCGACTGGATAGAGGCTACGGAT---GAAAATCGGTTGATTTTCCGCTCGAAA : 204576 133 : AlaLysLeuGlyArgTyrIleAlaCysPheCysAlaAlaPheMetHisGlySerValP : 152 ||||||:!!|||||| :!: ! .!!...|||||| !|||:!!|||.!!! !! AlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetTyrGlyGlyGlyL 204577 : GCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGTACGGCGGTGGTT : 204636 153 : heCysThrCysLeuValLeuGlyAlaPheLysArgThrIleGluValArgAsnGluTh : 171 !.||| ! ! !:!!||| ! !!!.!:! !!|||||| |||! ! !!!:!. euCysTyrArgThrIleLeuProLeuLeuArgGlyThrIle---ValThrProAspAs 204637 : TGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATC---GTAACACCTGATAA : 204690 172 : rIleLeuValTyrThrLeuProCysProAlaTyrLysLeu<-><->ProValGlnThr : 188 !:!! !:!! !!||||||||||||!.!||| ::: ! !||| ! nValThrIleArgProLeuProCysProValTyrPheValPhePheAsnGluGlnArg 204691 : CGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaacGAGCAACGT : 204747 189 : AsnProGlyHisAspIleIleLeuGlyThrGlnPheLeuSerAlaPheIleAlaThrS : 208 :::|||..!:!!!!:|||:!!!!! ! !|||.!!:!!:!!!.!|||:!!.!! !: SerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheValThrTyrA 204748 : TCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTGTTACTTACG : 204807 209 : erSerAlaAlaGlyAlaPheSerLeuAlaThrValPheAlaSerHisAlaLeuGlyGl : 227 !! ! !::!|||.!!! !.!!:!!..!.!!:!!|||!.! !||||||! !.!!.. laValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAlaCysSerMe 204808 : CTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGCGTGCAGCAT : 204864 228 : nLeuAsnIleMetValThrTrpIleAsnGluPheValAsnGln : 241 !|||!..|||:!!|||!.! !!!:|||! !.!!|||:!!:!! tLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLys 204865 : GCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAG : 204908 vulgar: gi|350412835|ref|XP_003489780.1| 16 241 . KQ414889.1 204233 204908 + 237 M 106 318 G 1 0 M 42 126 G 1 0 M 18 54 G 0 6 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204234 204908 237 + . gene_id 19 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204234 204908 . + . KQ414889.1 exonerate:protein2genome:local exon 204234 204908 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 204234 204908 237 + . alignment_id 19 ; Query gi|350412835|ref|XP_003489780.1| ; Align 204234 17 318 ; Align 204552 124 126 ; Align 204678 167 54 ; Align 204738 185 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 235 Query range: 296 -> 390 Target range: 305088 -> 305783 297 : TyrIleLeuAlaGluTrpSerGluHisAsnIleGlnAsnIleAlaAlaTyrValMetI : 316 |||::: !!!:|||..!... !|||! ! !:!:!!.!!.!!|||..!:!!: TyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValL 305089 : tatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGT : 305146 317 : leIleIleSerMetThrCysAsnIlePheLeuValCysTyrIleGlyGluIleIleMe : 335 !!:!:||||||:!:|||! !|||||||||:!!:!!||||||||||||||||||:!!|| euLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMe 305147 : TACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTAT : 305203 336 : tGluLys >>>> Target Intron 1 >>>> CysLysLysIleGlyAspMetV : 345 ||||||| 413 bp !!!..!..:!!||| tGluLys++ ++SerSerSerValGlyLeuSerC 305204 : GGAAAAGgt.........................agAGCAGTAGCGTTGGATTATCCT : 305646 346 : alTyrMetAlaAspTrpHisHisLeuProAspGlnAspIleIleAsnLeuIleMetIl : 364 !!:!||| !..!|||:!!||||||||| !:!! ||| !..!||||||:!:|| ysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleLeuIl 305647 : GTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTTTAAT : 305703 365 : eIleSerArgSerSerMetGluValLysIleThrAlaGlyLysIleIleAspMetSer : 383 ||||:!!! !||||||! !!.!||||||!:!|||||||||:!!:!!|||:!:||| eIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysValValAspLeuSer 305704 : CATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTATCT : 305760 384 : ValLeuThrPheAlaAsnIle : 390 :!!! !||||||!.!|||:!: LeuSerThrPheGlyAsnVal 305761 : TTATCCACATTTGGAAACGTG : 305783 vulgar: gi|350412835|ref|XP_003489780.1| 296 390 . KQ414889.1 305088 305783 + 235 M 41 123 5 0 2 I 0 409 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305089 305783 235 + . gene_id 20 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305089 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305089 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305089 305783 235 + . alignment_id 20 ; Query gi|350412835|ref|XP_003489780.1| ; Align 305089 297 123 ; Align 305625 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 223 Query range: 336 -> 403 Target range: 244655 -> 244945 337 : LysCysLysLysIleGlyAspMetValTyrMetAlaAspTrpHisHisLeuProAspG : 356 :!!||| !|||:!!|||!!::!!|||||||||.!!||||||:!!:!!||||||.!.: GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 357 : lnAspIleIleAsnLeuIleMetIleIleSerArgSerSerMetGluValLysIleTh : 375 :! |||:!!:!!||||||:!!||||||!.!||||||!:!|||! |||:!!||||| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 376 : rAlaGlyLysIleIleAspMetSerValLeuThrPheAlaAsn >>>> Target I : 390 ||||||||||:!!:!! !!||||||:!!! !||||||!.!:!! 89 rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAsp++ 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATgt............. : 244817 391 : ntron 1 >>>> IleValLysThrValPheAlaTyrLeuAsnMetLeuCysGln : 403 bp :!!|||||||||! !||||||||||||||||||||||||||| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGln 244818 : ............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAA : 244945 vulgar: gi|350412835|ref|XP_003489780.1| 336 403 . KQ414889.1 244655 244945 + 223 M 53 159 5 0 2 I 0 85 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244945 223 + . gene_id 21 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244656 244814 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244814 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244815 244816 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244815 244903 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244902 244903 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244904 244945 . + . KQ414889.1 exonerate:protein2genome:local exon 244904 244945 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244945 223 + . alignment_id 21 ; Query gi|350412835|ref|XP_003489780.1| ; Align 244656 337 159 ; Align 244904 390 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 221 Query range: 294 -> 390 Target range: 214611 -> 215022 295 : SerTyrTyrIleLeuAlaGluTrpSerGluHisAsnIleGlnAsnIleAlaAlaTyrV : 314 ...::: |||||| ||||||!:!..!:!!|||:!! !!.!! !!.!.!!|||| LysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrV 214612 : aaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAACTTACG : 214669 315 : alMetIleIleIleSerMetThrCysAsnIlePheLeuValCysTyrIleGlyGluIl : 333 ||:!!:!: !||||||:::||| |||||||||::: |||||||||||||||:! alValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLe 214670 : TGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGGCGAGCT : 214726 334 : eIleMetGluLys >>>> Target Intron 1 >>>> CysLysLysIleGlyA : 343 !:!: |||:!! 123 bp |||||||||:!!|||! uValSerGluGln++ ++CysLysLysValGlyG 214727 : TGTGTCTGAACAGgt.........................agTGCAAAAAGGTCGGAG : 214879 344 : spMetValTyrMetAlaAspTrpHisHisLeuProAspGlnAspIleIleAsnLeuIl : 362 !::!: !|||||| !!!:|||:!!!..||||||! !.!. ! ! :!! !! !|| luValSerTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCysCysIl 214880 : AAGTATCGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTGTTGCAT : 214936 363 : eMetIleIleSerArgSerSerMetGluValLysIleThrAlaGlyLysIleIleAsp : 381 |:!!|||!!::!!! !|||!:! ...||||||.!!|||||||||!!.!!::!!!!: eLeuIleMetAlaMetSerAsnSerSerValLysPheThrAlaGlyAsnMetValGlu 214937 : TTTGATCATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATGGTAGAA : 214993 382 : MetSerValLeuThrPheAlaAsnIle : 390 :!!|||:!! !||||||::!!:!:!! LeuSerIleSerThrPheSerSerVal 214994 : CTGTCTATCAGCACTTTCAGCAGTGTA : 215022 vulgar: gi|350412835|ref|XP_003489780.1| 294 390 . KQ414889.1 214611 215022 + 221 M 43 129 5 0 2 I 0 119 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214612 215022 221 + . gene_id 22 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214612 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214612 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214612 215022 221 + . alignment_id 22 ; Query gi|350412835|ref|XP_003489780.1| ; Align 214612 295 129 ; Align 214864 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 220 Query range: 336 -> 403 Target range: 238625 -> 238915 337 : LysCysLysLysIleGlyAspMetValTyrMetAlaAspTrpHisHisLeuProAspG : 356 :!!||| !|||:!!|||!!::!!|||||||||.!!||||||:!!:!!||||||.!.: GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 357 : lnAspIleIleAsnLeuIleMetIleIleSerArgSerSerMetGluValLysIleTh : 375 :! |||:!!:!!||||||:!!||||||!.!||||||!:!:!!! ||||||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 376 : rAlaGlyLysIleIleAspMetSerValLeuThrPheAlaAsn >>>> Target I : 390 ||||||||||:!!:!! !!||||||:!!! !||||||!.!:!! 89 rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAsp++ 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATgt............. : 238787 391 : ntron 1 >>>> IleValLysThrValPheAlaTyrLeuAsnMetLeuCysGln : 403 bp :!!|||||||||! !|||||||||:!!||||||||||||||| ++ValValLysThrGlyPheAlaTyrMetAsnMetLeuCysGln 238788 : ............agGTAGTAAAAACAGGATTCGCCTACATGAATATGCTTTGTCAA : 238915 vulgar: gi|350412835|ref|XP_003489780.1| 336 403 . KQ414889.1 238625 238915 + 220 M 53 159 5 0 2 I 0 85 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238915 220 + . gene_id 23 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 238626 238784 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238784 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238785 238786 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238785 238873 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 238872 238873 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238874 238915 . + . KQ414889.1 exonerate:protein2genome:local exon 238874 238915 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238915 220 + . alignment_id 23 ; Query gi|350412835|ref|XP_003489780.1| ; Align 238626 337 159 ; Align 238874 390 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 199 Query range: 294 -> 401 Target range: 210645 -> 212069 295 : SerTyrTyrIleLeuAlaGluTrpSerGluHisAsnIleGlnAsnIleAlaAlaTyrV : 314 ||| ! !:!:!!||| !||||||..!... ! :!! ! !:!! ! !.!!|||: SerGlnPheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrI 210646 : TCGCAATTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACA : 210703 315 : alMetIleIleIleSerMetThrCysAsnIlePheLeuValCysTyrIleGlyGluIl : 333 !!:!::!!:!!! !|||:!:|||! !|||||||||:!! !!|||||||||||||||:! leValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluVa 210704 : TAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGT : 210760 334 : eIleMetGluLys >>>> Target Intron 1 >>>> CysLysLysIleGlyA : 343 ::!: |||:!: 999 bp !|||:!!|||! lLeuAlaGluGln++ ++ThrValLysValGlyG 210761 : GTTGGCTGAACAggt.........................agACAGTAAAAGTTGGAG : 211789 344 : spMetValTyrMetAlaAspTrpHisHisLeuProAspGlnAspIleIleAsnLeuIl : 362 !:! ! !|||||| !||||||:!!!..:!!|||! :!! ! !:!: !:!! luLysSerTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValValPr 211790 : AAAAGTCTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACC : 211846 363 : eMetIleIleSerArgSerSerMetGluValLysIleThrAlaGlyLysIleIleAsp : 381 !:!!!!:||||||! !||| ! ! ..!|||||||||||||||!!.:!!|||! ! oLeuMetIleSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleVal 211847 : CTTGATGATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTT : 211903 382 : MetSerValLeuThrPheAlaAsn >>>> Target Intron 2 >>>> IleVa : 391 :!:|||:!! !!:!|||!.!:!! 104 bp :!!:! LeuSerIleSerSerPheGlyAsp++ ++ValIl 211904 : CTTTCAATCAGTAGTTTCGGTGACgt.........................agGTTAT : 212037 392 : lLysThrValPheAlaTyrLeuAsnMetLeu : 401 !|||||| ! ! .!!||||||||||||||| eLysThrSerValThrTyrLeuAsnMetLeu 212038 : CAAGACTTCGGTAACATACTTGAACATGCTA : 212069 vulgar: gi|350412835|ref|XP_003489780.1| 294 401 . KQ414889.1 210645 212069 + 199 M 43 129 5 0 2 I 0 995 3 0 2 M 52 156 5 0 2 I 0 100 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210646 212069 199 + . gene_id 24 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 210646 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210646 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211929 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 211930 211931 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 211930 212033 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 212032 212033 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 212034 212069 . + . KQ414889.1 exonerate:protein2genome:local exon 212034 212069 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210646 212069 199 + . alignment_id 24 ; Query gi|350412835|ref|XP_003489780.1| ; Align 210646 295 129 ; Align 211774 338 156 ; Align 212034 390 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 184 Query range: 18 -> 209 Target range: 294690 -> 295269 19 : SerIleGlnValAsnArgTrpIleLeuLysProIleGlyAlaTrpProSerSerAsnS : 38 |||:!!:!! ! !||| !!:!:||||||||||||||| !|||||| !! ! !!| SerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrS 294691 : AGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACA : 294748 39 : erThrThrAsnArg<->GluLysPheMetSerTrpIleLeuAsnValIleCysTrpCy : 56 || !|||!:!!:! .!.||| !!:!:||| ||||||! !!.! ||| !! erHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLe 294749 : GTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTT : 294805 57 : sPheSerLeuPheThrIleIleProGlyValLeuAsnIleLeuLeuGluLysGluAsp : 75 ! !||||||..!:!!:!:||| !!! !! ! ! !:!!!!!.!. :::::: uThrValLeuPheValLeuValProCysGlyTyrPheCysValPheHisValLysAsn 294806 : GACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaac : 294862 76 : LeuTyrLeuLysLeuLysMetPheGlyProLeuSerHisTrpCysValGlyGlyPheA : 95 ::: ||||||:!!|||:!:.!.||||||:!! !:!!! :!!..! !.!!! ValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuA 294863 : gtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCA : 294922 96 : snTyrAlaValLeuLeuLeuArgGlnGlyAspIleHisTyrCysIleLysHisIleAr : 114 ..|||::! !|||:!!|||!:! ! !! .!! ! :!!||||||:!! !!|||.. rgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCysIleGluAspIleGl 294923 : GGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGA : 294979 115 : gThrAspTrpLysThrIleThrArgLeuGluAspGlnArgIleMetLeuLysAsnAla : 133 !!.!||||||||| !||| !!.!! !||| !!!:! !||||||:!!||||||||| uAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIleMetIleLysAsnAla 294980 : GAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCG : 295036 134 : LysLeuGlyArgTyrIleAlaCysPheCysAlaAlaPheMetHisGlySerValPheC : 153 ! !:!! !!:! !!:.!! ! !! !.!! !.!.!!::!!.!!|||!.! ! ! MetValThrGlnArgMetThrValAlaPheThrIleIleIleTyrSerSerAlaValS 295037 : ATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGT : 295096 154 : ysThrCysLeuValLeuGlyAlaPheLysArgThrIleGlu<->ValArgAsnGluTh : 171 ! ! !:!!::: |||.........:!:||| !!:!|||.!.|| erTyrHisAlaIleValProPhePheSerAsnAlaLeuGluAsnLysLysAsnAsnTh 295097 : CGTATCACGCCATTGtgccatttttttcaaacgctTTGGAGAACAAGAAGAATAATAC : 295153 172 : rIleLeuValTyrThrLeuProCysProAlaTyrLysLeuProValGlnThrAsnPro : 190 ||||! !!.!! !!:!!||| !! !! !! :!! !!.! ! :!!!:!||| rIleArgAlaLeuProIleProGlyTyrGluLeuPheValAspAlaTyrSerSerPro 295154 : GATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGTCCT : 295210 191 : GlyHisAspIleIleLeuGlyThrGlnPheLeuSerAlaPheIleAlaThrSerSer : 209 !:!!!!:|||||| ! ! !! |||:!!! !:!!|||.!!!.!!.!!.!!!! ThrTyrGluIleIleArgThrHisLeuPheValTyrSerPhePheValAsnLysThr 295211 : ACCTACGAGATCATAAGAACTCATCTCTTTGTTTACTCGTTCTTCGTCAACAAAACT : 295269 vulgar: gi|350412835|ref|XP_003489780.1| 18 209 . KQ414889.1 294690 295269 + 184 M 24 72 G 0 3 M 124 372 G 0 3 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294691 295269 184 + . gene_id 25 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294691 295269 . + . KQ414889.1 exonerate:protein2genome:local exon 294691 295269 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294691 295269 184 + . alignment_id 25 ; Query gi|350412835|ref|XP_003489780.1| ; Align 294691 19 72 ; Align 294766 43 372 ; Align 295141 167 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 334 -> 395 Target range: 283270 -> 283453 335 : MetGluLysCysLysLysIleGlyAspMetValTyrMetAlaAspTrpHisHisLeuP : 354 .!...!:!!|||||||||:!!|||!!::!!|||||||||.!!:!!! ! !:!!|||| PheArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuP 283271 : TTCCGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTAC : 283328 355 : roAspGlnAspIleIleAsnLeuIleMetIleIleSerArgSerSerMetGluValLy : 373 |||||:!!||||||:!!||||||:!!:!:||||||||||||||||||::: :::|| roAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLy 283329 : CCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaa : 283385 374 : sIleThrAlaGlyLysIleIleAspMetSerValLeuThrPheAlaAsnIleValLys : 392 ||||||||||...|||:::|||...||||||!.!! !||||||! !:!!:!! !..! sIleThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspValArgSer 283386 : aattaccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTACGTTCA : 283442 393 : ThrValPhe : 395 !:!!||| LeuLeuPhe 283443 : CTTCTTTTT : 283453 vulgar: gi|350412835|ref|XP_003489780.1| 334 395 . KQ414889.1 283270 283453 + 171 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283271 283453 171 + . gene_id 26 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283271 283453 . + . KQ414889.1 exonerate:protein2genome:local exon 283271 283453 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283271 283453 171 + . alignment_id 26 ; Query gi|350412835|ref|XP_003489780.1| ; Align 283271 335 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 169 Query range: 335 -> 390 Target range: 234982 -> 235147 336 : GluLysCysLysLysIleGlyAspMetValTyrMetAlaAspTrpHisHisLeuProA : 355 :!!:!!|||! |||:!!|||!!:! |||||||||.!!!!:|||:!!!..|||||| GlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProH 234983 : CAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTC : 235040 356 : spGlnAspIleIleAsnLeuIleMetIleIleSerArgSerSerMetGluValLysIl : 374 !!:!! ! !:!!..!|||:!!||||||||||||||||||||||||! !:!!||||| isLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIl 235041 : ATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAAT : 235097 375 : eThrAlaGlyLysIleIleAspMetSerValLeuThrPheAlaAsnIle : 390 |||||||||||||.!!:!!.!.||||||||| !||||||!.!:!!:!: eThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235098 : CACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: gi|350412835|ref|XP_003489780.1| 335 390 . KQ414889.1 234982 235147 + 169 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234983 235147 169 + . gene_id 27 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234983 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234983 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234983 235147 169 + . alignment_id 27 ; Query gi|350412835|ref|XP_003489780.1| ; Align 234983 336 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 169 Query range: 300 -> 390 Target range: 301686 -> 302036 301 : GluTrpSerGluHisAsnIleGlnAsnIleAlaAlaTyrValMetIleIleIleSerM : 320 ||||||..!.!. !:!!! !!!: !.!!!:! !!! :!::!!! |||. GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerP 301687 : GAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGT : 301744 321 : etThrCysAsnIlePheLeuValCysTyrIleGlyGluIleIleMetGluLys >>> : 338 !.|||! !|||||||||:!! !!||||||||||||||||||:!! |||:!! heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301745 : TCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt... : 301800 339 : > Target Intron 1 >>>> CysLysLysIleGlyAspMetValTyrMetAlaA : 349 80 bp |||!..:!!||||||... !||| ! !| ++CysSerGlnIleGlySerAlaSerTyrGluIleA 301801 : ......................agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCG : 301911 350 : spTrpHisHisLeuProAspGlnAspIleIleAsnLeuIleMetIleIleSerArgSe : 368 |||||:!!:!!||||||! :!! ! !:!!||||||:!::!!! ! !! !|| spTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSe 301912 : ATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATC : 301968 369 : rSerMetGluValLysIleThrAlaGlyLysIleIleAspMetSerValLeuThrPhe : 387 |..! ! !|||:!!|||||||||||||||||||||:!:|||:!! !|||||| rGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPhe 301969 : GCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTC : 302025 388 : AlaAsnIle : 390 ::!::!:!! SerSerVal 302026 : AGCTCTGTA : 302036 vulgar: gi|350412835|ref|XP_003489780.1| 300 390 . KQ414889.1 301686 302036 + 169 M 37 111 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301687 302036 169 + . gene_id 28 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301687 302036 169 + . alignment_id 28 ; Query gi|350412835|ref|XP_003489780.1| ; Align 301687 301 111 ; Align 301878 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 300 -> 394 Target range: 224323 -> 224670 301 : GluTrpSerGluHisAsnIleGlnAsnIleAlaAlaTyrValMetIleIleIleSerM : 320 |||||||||... :!!:!! !:! !.!.!!||| !!!!::!!:!!!!:|||: GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 321 : etThrCysAsnIlePheLeuValCysTyrIleGlyGluIleIleMetGluLysCysLy : 339 ::||| |||||||||::: |||||||||||||||:!::!! |||::: || euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlnValLy 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggtgaa : 224438 340 : s{L} >>>> Target Intron 1 >>>> {ys}IleGlyAspMetValTyrMet : 347 |{|} 65 bp {||}||||||...:!! !|||||| s{L}-+ +-{ys}IleGlyGlnValSerTyrMet 224439 : a{a}at.........................aa{aa}attggacaAGTGTCGTACATG : 224527 348 : AlaAspTrpHisHisLeuProAspGlnAspIleIleAsnLeuIleMetIleIleSerA : 367 !||||||:!!!..||| !!! .!. ! ! !:!! !! !|||:!!||||||:!!! IleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaM 224528 : ATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGA : 224587 368 : rgSerSerMetGluValLysIleThrAlaGlyLysIleIleAspMetSerValLeuTh : 386 !|||!:! ..!:!!|||:!:|||||||||!!.!!::!!!!::!!!!!:!! !|| etSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrTh 224588 : TGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCAC : 224644 387 : rPheAlaAsnIleValLysThrVal : 394 ||||!.!:!!:!! !! |||:!! rPheGlyAspValSerIleThrIle 224645 : TTTCGGTGACGTAAGTATCACAATC : 224670 vulgar: gi|350412835|ref|XP_003489780.1| 300 394 . KQ414889.1 224323 224670 + 162 M 39 117 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224670 162 + . gene_id 29 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224324 224441 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224441 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224442 224443 . + . intron_id 1 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local intron 224442 224506 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224505 224506 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 224507 224670 . + . KQ414889.1 exonerate:protein2genome:local exon 224507 224670 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224670 162 + . alignment_id 29 ; Query gi|350412835|ref|XP_003489780.1| ; Align 224324 301 117 ; Align 224509 341 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 17 -> 151 Target range: 303196 -> 303589 18 : TyrSerIleGlnValAsnArgTrpIleLeuLysProIleGlyAlaTrpProSerSerA : 37 ||| !! !:!! !!:!!:!|||||||||||| !!:!!||| !||||||:!! ! TyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTrpProAlaValL 303197 : TACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTGGCCAGCCGTGT : 303254 38 : snSerThrThrAsnArgGluLysPheMetSerTrpIleLeuAsnValIleCysTrpCy : 56 ..! !||| ! ! !|||:!: !! ||| !! !! !:!! !! ! euAspGluThr------AlaGlyPheLeuProLysIleThrIleGlyLeuSerAsnLe 303255 : TGGACGAAACC------GCAGGATTCCTACCAAAAATCACCATTGGACTCAGTAATTT : 303305 57 : sPheSerLeuPheThrIleIleProGlyValLeuAsnIleLeuLeuGluLysGluAsp : 75 !! !|||||||||:!:|||||| !!:!!|||:!!|||:!!!!!|||:!!:!!||| uValLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnLysAsp 303306 : GGTTCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAAAGGAT : 303362 76 : LeuTyrLeuLysLeuLysMetPheGlyProLeuSerHisTrpCysValGlyGlyPheA : 95 ! :!!!:!||||||:!:||||||! !|||||| !!! ! :!!..! !.!.! ThrIleIleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLeuMetL 303363 : ACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTTGATGA : 303422 96 : snTyrAlaValLeuLeuLeuArgGlnGlyAspIleHisTyrCysIleLysHisIleAr : 114 !.||| !!.!||| ! !|||:!! ! ||| ! ! ||||||:!!.!.:!:!: ysTyrTrpAlaLeuAlaThrArgLysProArgIleLysGluCysIleGluGluValGl 303423 : AGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAGGTGCA : 303479 115 : gThrAspTrpLysThrIleThrArgLeuGluAspGlnArgIleMetLeuLysAsnAla : 133 !!:!||||||||| !:!:!:! :!! !!!.|||:::::::::|||||| nSerAspTrpLysGluValSer---ValCysIleHisArgValLeuIleLysAsnArg 303480 : AAGTGATTGGAAAGAGGTGAGT---GTTTGCATTCATAgagtattaattaaaaatcga : 303533 134 : LysLeuGlyArgTyrIleAlaCysPheCysAlaAlaPheMetHisGlySerVal : 151 :!!..! !||| !!.!...! ||| ! ! ||||||:!! ThrValSerLeuTyrTyrValAla***CysPheLysGluGluSerGlySerIle 303534 : actGTTTCATTATATTATGTAGCATAATGCTTCAAAGAGGAATCAGGTAGTATT : 303589 vulgar: gi|350412835|ref|XP_003489780.1| 17 151 . KQ414889.1 303196 303589 + 160 M 23 69 G 2 0 M 79 237 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303197 303589 160 + . gene_id 30 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 303197 303589 . + . KQ414889.1 exonerate:protein2genome:local exon 303197 303589 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 303197 303589 160 + . alignment_id 30 ; Query gi|350412835|ref|XP_003489780.1| ; Align 303197 18 69 ; Align 303266 43 237 ; Align 303503 123 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 16 -> 116 Target range: 299686 -> 299989 17 : GluTyrSerIleGlnValAsnArgTrpIleLeuLysProIleGlyAlaTrpProSerS : 36 .!.|||!!!:!:|||:!! !!:!|||:!:|||||||||||||||!.!|||! !! ! HisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpArgLeuL 299687 : CATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGCGATTGC : 299744 37 : erAsnSerThrThrAsnArg<->GluLysPheMetSerTrpIleLeuAsnValIleCy : 54 !:!!..! !:!!!:!!:! ||| ! .!!:!:||| :!!|||! ..!||||| euAspGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMetThrIleCy 299745 : TAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATGACAATATG : 299801 55 : sTrpCysPheSerLeuPheThrIleIleProGlyValLeuAsnIleLeuLeuGluLys : 73 |!::! ! ! !!!!|||! !:!!:!:|||..!! !! ! !!|||!!!!!!! !:!! sPheSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePhePheAlaGlu 299802 : CTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCTTCGCGGAG : 299858 74 : GluAspLeuTyrLeuLysLeuLysMetPheGlyProLeuSerHisTrpCysValGlyG : 93 :!!..!:!!:!!:!!|||:!!|||:!:|||||||||:!!.!! !!! ! !..! LysSerIleHisValLysValLysValPheGlyProValGlyPheCysLeuSerSerI 299859 : AAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCA : 299918 94 : lyPheAsnTyrAlaValLeuLeuLeuArgGlnGlyAspIleHisTyrCysIleLysHi : 112 ! !!!!.|||..! !|||! !|||!.! |||! .!!.!. ||||||:!!|| leValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCysIleGlnHi 299919 : TCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGCATCCAACA : 299975 113 : sIleArgThrAsp : 116 |:!!..!! !||| sValGluArgAsp 299976 : CGTCGAGAGAGAC : 299989 vulgar: gi|350412835|ref|XP_003489780.1| 16 116 . KQ414889.1 299686 299989 + 147 M 26 78 G 0 3 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299687 299989 147 + . gene_id 31 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299687 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299687 299989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299687 299989 147 + . alignment_id 31 ; Query gi|350412835|ref|XP_003489780.1| ; Align 299687 17 78 ; Align 299768 43 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 336 -> 405 Target range: 261922 -> 262201 337 : LysCysLysLysIleGlyAspMetValTyrMetAlaAspTrpHisHisLeuProAspG : 356 :!!|||..!|||:!!||||||:!:|||||||||.!!:!!|||:!!:!!|||||||||: GlnCysSerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuProAspL 261923 : CAGTGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACCTGATA : 261980 357 : lnAspIleIleAsnLeuIleMetIleIleSerArg-SerSerMetGluValLysIleT : 375 !!..!|||:!!:!!||||||:!!||||||:!!|||#!:! !! !|||:!!!.. !! ysSerIleLeuAspLeuIleLeuIleIleAlaArg#AsnArgArgGluIleSerSerA 261981 : AAAGTATCCTTGATTTGATTTTGATCATTGCACGAAAACCGCCGGGAAATTAGTTCAA : 262038 376 : hrAlaGlyLysIleIleAspMet{S} >>>> Target Intron 1 >>>> {er : 383 .!!.!||| ! !:!! {|} 71 bp {|| snValGlyLeuHisValArgArg{S}++ +-{er 262039 : ATGTCGGTTTACACGTTCGGCGA{T}gt.........................ac{CA : 262134 384 : }ValLeuThrPheAlaAsnIleValLysThrValPheAlaTyrLeuAsnMetLeuCys : 402 } !! ! !.!. !.!.:!:|||||||||!.!|||||||||||||||:!!||| !! }SerProLeuIlePheGlnValValLysThrAlaPheAlaTyrLeuAsnLeuLeuArg 262135 : }AGTCCGTTGATATTCCAGGTGGTTAAAACTGCTTTCGCGTATCTGAATCTGTTGCGT : 262190 403 : GlnThrThr : 405 |||! !||| GlnMetThr 262191 : CAAATGACG : 262201 vulgar: gi|350412835|ref|XP_003489780.1| 336 405 . KQ414889.1 261922 262201 + 124 M 31 93 F 0 1 M 15 45 S 0 1 5 0 2 I 0 67 3 0 2 S 1 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261923 262201 124 + . gene_id 32 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 261923 262062 . + . KQ414889.1 exonerate:protein2genome:local exon 261923 262062 . + . insertions 0 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local splice5 262063 262064 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 262063 262133 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 262132 262133 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 262134 262201 . + . KQ414889.1 exonerate:protein2genome:local exon 262134 262201 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 261923 262201 124 + . alignment_id 32 ; Query gi|350412835|ref|XP_003489780.1| ; Align 261923 337 93 ; Align 262017 368 45 ; Align 262136 384 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 998 Query range: 9 -> 411 Target range: 289693 -> 293254 10 : AspAspGlnLeuArgAsnIleHisTyrGluAsnAspIleHisTyrThrLeuGlnMetC : 29 ..!|||!::! ! !||| !!.!||||||!..||||||!.!||||||!!!:!!:!:| SerAspArgProSerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuC 289694 : AGCGATCGTCCGTCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTAT : 289751 30 : ysGlnTrpLeuLeuLysProIleGlyValTrpProLeuValSerAsnHisThrSerLy : 48 ||!!.|||:!!|||||||||||||||:!!!::|||!!!|||! !!:!!.!.!!|||!: ysHisTrpIleLeuLysProIleGlyMetTyrProPheValPheSerArgAlaSerAr 289752 : GCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAG : 289808 49 : sLeuGluGlnLeuValSerValIleLeuMetIleMetCysPheSerSerLeuLeuPhe : 67 !! !|||!:! !!.!||||||:!:|||!!::!::!:|||! !|||! !|||! !||| gArgGluArgThrAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPhe 289809 : ACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTC : 289865 68 : IleIleLeuProSerPheTyrHisIlePhePheValGluLysSerValHisValLysV : 87 ||||||:!!|||! ! !:!!|||:!!.!.||| !!!:!!...!:!!:!!..! | IleIleValProPheSerHisHisValLeuPheSerAspAsnAspMetAsnThrPheV 289866 : ATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCG : 289925 88 : alLysLeuLeuGlyProValGlyPheCysLeuSerSerThrIleLysTyrCysTyrLe : 106 ||||| !|||||||||:!! !|||||||||!!!!!! !.!!||||||||||||!! alLysAsnLeuGlyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPh 289926 : TTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTT : 289982 107 : uGlyValLysGlyAlaPhePheGluArgCysIleGlnHisValGluLysAspTrpLys : 125 !.!!:!!||||||:!! .!!! ||||||:!::!!|||:!!|||!:!||||||||| eSerMetLysGlySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLys 289983 : CAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAG : 290039 126 : MetValGlnAspProAsnHisArgThrIleMetLeuLysTyrAlaThrValSerArgL : 145 |||:!!!::||| !:!!||||||..!|||||||||!:!|||!.!|||:!!||||||! MetLeuArgAspGluAspHisArgValIleMetLeuArgTyrValThrMetSerArgA 290040 : ATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGA : 290099 146 : ysLeuIleThrLeuCysAlaIlePheLeuTyrThrGlyGlyMetSerTyrHisThrVa : 164 !.||||||! !|||||||||||||||||||||! !||||||:!!||||||:!!||||| snLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrVa 290100 : ATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGT : 290156 165 : lMetGlnPheLeuSerLysGluArgAsnLysLysAsnTyrThrPheArgProLeuThr : 183 |!!:! !!!.!!!||||||:!!!!! !!. ||| |||.!!|||||||||||| lIleProLeuPheSerLysLysSerValAsnGlyAsnValThrIleArgProLeuThr 290157 : CATACCGTTGTTCTCGAAGAAGAGCGTGAACGGTAACGTGACTATCAGACCTCTAACT : 290213 184 : TyrProGlyTyrAspSerPheLeuAspThrGlnSerSerProThrTyrGluValValP : 203 ||||||||||||!!:..!|||!!!|||..!|||!.!||||||.!!||||||:!!|||| TyrProGlyTyrGluGluPhePheAspValGlnLysSerProAlaTyrGluIleValP 290214 : TATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCT : 290273 204 : hePheLeuGlnCysPheAlaAlaMetIleMetTyrSerValThrThrValAlaTyrSe : 222 ||! !:!!!!.||| !! !!.!||||||! ! !:!:!!|||! !!.!|||||||| heCysMetHisCysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSe 290274 : TCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAG : 290330 223 : rLeuAlaAlaIlePheValThrHisIleCysGlyGlnIleGlnValGlnIleAlaArg : 241 ||||.!!.!!||||||!.!||||||! !||||||||||||:!!:!!|||! .!!||| rLeuThrThrIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArg 290331 : TTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGG : 290387 242 : LeuHisAspLeuValGluAsnGluLysArgLysAsnAsnGly<->ArgAspSerMetS : 260 |||.!.||||||..!:!!!..! !! !! ! !.!.!!.||| !!!||| !!:!!: LeuGluAspLeuThrLysArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuA 290388 : CTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGG : 290447 261 : erValIleValHisAspHisValGluValLeu{Ar} >>>> Target Intron 1 : 271 !!|||:!!||| !! !|||||||||:!!|||{!:} 783 bp laValValValSerGlyHisValGluIleLeu{Ly}++ 290448 : CGGTTGTTGTGAGCGGTCACGTGGAGATCTTG{AA}gt.................... : 290484 272 : >>>> {g}PheSerLysAsnValGluGluAlaLeuArgGluIleCysLeuThrGlu : 287 {!} !!! ! ...:!! ||| :::::: ||| ! +-{s}***ThrTyrArgIleLeuGluGluLysLysLysLysTyrArgThrTyr 290485 : .....at{a}taAACGTACCGGATActcgaggaaaagaaaaaaaagtatcgaacGTAT : 291311 288 : IleValGluSerThrIleIleMetCysLeuLeuGluTyrTyrCysMetMet----Glu : 305 ! !! !!:!! !:!!|||! !!! ::::::... :::|||:!::!:####||| ArgTyrValAsnIleValIleThr***IleIleArgAsnPheCysIleLeu####Glu 291312 : CGTTACGTAAATATCGTTATAACGTGAataattcgaaacttttgtaTACTTTTAGGAA : 291369 306 : TrpGlnAsnSerAspAlaIleAlaIleLeuThrTyrValThrLeuLeuIleSerPheT : 325 |||:!!!:!||||||:!!|||!.!||||||||||||||||||||||||! !||||||| TrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerPheT 291370 : TGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTTTCA : 291429 326 : hrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGln >>>> T : 342 |||||||||||.!.||||||||||||:!!||||||:!!||| !! !||| hrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln++ 291430 : CTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAGgt...... : 291482 343 : arget Intron 2 >>>> CysSerGlnIleGlyIleThrSerTyrGluIleGluT : 354 913 bp !!|||:!!|||!.! !.!!||||||!!:! !|||| ++GlySerGluIleAlaHisAlaSerTyrAspThrGluT 291483 : ...................agGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAAT : 292429 355 : rpTyrGlnLeuProAlaLysLysAlaTyrAspLeuIleLeuLeuIleSerIleSerHi : 373 |||||.!.|||||| !::!|||||| !|||:!!:!!|||:!!:!!:!!|||!!! ! rpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLy 292430 : GGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAA : 292486 374 : sTyrProProLysLeuThrAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSer : 392 :!!||| !|||||||||||||||||||||.!!! ||||||||||||||||||.!! sHisProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPheGly 292487 : ACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGC : 292543 393 : Ser >>>> Target Intron 3 >>>> ValAlaLysSerSerValIleTyrLe : 402 :!! 652 bp ||| !||||||||||||:!!|||:! Ala++ ++ValLeuLysSerSerValValTyrMe 292544 : GCTgt.........................agGTGCTGAAATCGTCGGTAGTTTACAT : 293225 403 : uAsnLeuLeuArgThrValThrAspTrp : 411 !|||:!!|||||||||||||||!!:!:: tAsnMetLeuArgThrValThrGluPhe 293226 : GAACATGCTACGAACCGTCACTGAATTC : 293254 vulgar: gi|350412763|ref|XP_003489754.1| 9 411 . KQ414889.1 289693 293254 + 998 M 246 738 G 0 3 M 15 45 S 0 2 5 0 2 I 0 779 3 0 2 S 1 1 M 33 99 F 0 4 M 37 111 5 0 2 I 0 909 3 0 2 M 52 156 5 0 2 I 0 648 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289694 293254 998 + . gene_id 1 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 289694 290481 . + . KQ414889.1 exonerate:protein2genome:local exon 289694 290481 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 290482 290483 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 290482 291264 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 291263 291264 . + . intron_id 0 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local cds 291265 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291265 291479 . + . insertions 0 ; deletions 0 ; frameshifts 4 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292548 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292548 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 292549 292550 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 292549 293200 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 293199 293200 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 293201 293254 . + . KQ414889.1 exonerate:protein2genome:local exon 293201 293254 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289694 293254 998 + . alignment_id 1 ; Query gi|350412763|ref|XP_003489754.1| ; Align 289694 10 738 ; Align 290435 256 45 ; Align 291266 272 99 ; Align 291369 305 111 ; Align 292393 342 156 ; Align 293201 394 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 895 Query range: 172 -> 411 Target range: 300180 -> 302169 173 : AsnLysLysAsnTyrThrPheArgProLeuThrTyrProGlyTyrAspSerPheLeuA : 192 !!.!:!:!!|||||||||!:!!:!||||||.!!|||||||||||||||!!!|||:!!| LysArgGluAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleA 300181 : AAAAGGGAGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCG : 300238 193 : spThrGlnSerSerProThrTyrGluValValPhePheLeuGlnCysPheAlaAlaMe : 211 ||||||||!!!|||||||||||||||:::|||||||||......|||||||||||||| spThrGlnThrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMe 300239 : ATACACAAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGAT : 300295 212 : tIleMetTyrSerValThrThrValAlaTyrSerLeuAlaAlaIlePheValThrHis : 230 ||||||||||!:!|||||||||!.!||||||||||||||||||||||||||||||||| tIleMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHis 300296 : GATCATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCAT : 300352 231 : IleCysGlyGlnIleGlnValGlnIleAlaArgLeuHisAspLeuValGluAsnGluL : 250 ||||||||||||||||||:!!|||!!:|||||||||.!.||||||||||||!.. ! IleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrG 300353 : ATCTGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGG : 300412 251 : ysArgLysAsnAsnGlyArgAspSerMetSerValIleValHisAspHisValGluVa : 269 !..!|||:!!:!!|||! !||| !!:!! !|||||||||!..|||||||||:!!|| lyGluLysAspAspGlyProAspProLeuValValIleValArgAspHisValLysVa 300413 : GAGAGAAGGACGACGGTCCTGATCCTTTGGTCGTTATCGTTCGAGATCACGTGAAGGT : 300469 270 : lLeu{Ar} >>>> Target Intron 1 >>>> {g}PheSerLysAsnValGlu : 277 ||||{||} 140 bp {|}|||:!!|||||||||||| lLeu{Ar}++ ++{g}PheAlaLysAsnValGlu 300470 : TTTA{AG}gt.........................ag{A}TTTGCAAAGAACGTTGAG : 300633 278 : GluAlaLeuArgGluIleCysLeuThrGluIleValGluSerThrIleIleMetCysL : 297 |||.!!||||||!!:.!!||||||..!|||||| !!|||||||||:!:|||:!!|||| GluThrLeuArgAspPheCysLeuValGluIlePheGluSerThrLeuIleLeuCysL 300634 : GAAACTTTGCGTGACTTCTGCTTAGTGGAAATCTTCGAGTCCACGCTGATTTTGTGTT : 300693 298 : euLeuGluTyrTyrCysMetMet >>>> Target Intron 2 >>>> GluTrp : 306 |||||||||||||||||:!!:!! 970 bp |||||| euLeuGluTyrTyrCysLeuVal++ ++GluTrp 300694 : TGCTCGAATACTACTGTTTGGTGgt.........................agGAATGG : 301690 307 : GlnAsnSerAspAlaIleAlaIleLeuThrTyrValThrLeuLeuIleSerPheThrP : 326 ||||||||||||.!!||||||!!:||||||!:! !!|||||||||! |||||||||| GlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrP 301691 : CAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTT : 301750 327 : heAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGln >>>> Targ : 342 ||||||||||||||||||||||||||||||||||||||:!!|||||| heAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301751 : TCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt......... : 301800 343 : et Intron 3 >>>> CysSerGlnIleGlyIleThrSerTyrGluIleGluTrpT : 355 80 bp ||||||||||||||| !.!!||||||||||||!!:|||| ++CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpT 301801 : ................agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGT : 301917 356 : yrGlnLeuProAlaLysLysAlaTyrAspLeuIleLeuLeuIleSerIleSerHisTy : 374 ||.!.||||||||||||!:!|||||||||||||||||||||! ! !||||||!!.|| yrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTy 301918 : ACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTA : 301974 375 : rProProLysLeuThrAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSerSer : 393 |||||||||||||||||||||||||||||||!!:|||||||||||||||||||||||| rProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSer 301975 : TCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCT : 302031 394 : >>>> Target Intron 4 >>>> ValAlaLysSerSerValIleTyrLeuAs : 403 82 bp |||!.!|||!!!||||||:!:|||||||| ++ ++ValValLysThrSerValValTyrLeuAs 302032 : gt.........................agGTGGTGAAAACATCGGTGGTGTACTTGAA : 302143 404 : nLeuLeuArgThrValThrAspTrp : 411 |||||||||||||||||||:!!||| nLeuLeuArgThrValThrAsnTrp 302144 : TTTACTGCGAACAGTTACAAACtgg : 302169 vulgar: gi|350412763|ref|XP_003489754.1| 172 411 . KQ414889.1 300180 302169 + 895 M 98 294 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 33 99 5 0 2 I 0 966 3 0 2 M 37 111 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300181 302169 895 + . gene_id 2 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300181 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300181 300476 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 300616 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300615 300616 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300617 300716 . + . KQ414889.1 exonerate:protein2genome:local exon 300617 300716 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300717 300718 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300717 301686 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301685 301686 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 3 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302169 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302169 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300181 302169 895 + . alignment_id 2 ; Query gi|350412763|ref|XP_003489754.1| ; Align 300181 173 294 ; Align 300618 272 99 ; Align 301687 305 111 ; Align 301878 342 156 ; Align 302116 394 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 649 Query range: 11 -> 395 Target range: 212836 -> 215025 12 : GlnLeuArgAsnIleHisTyrGluAsnAspIleHisTyrThrLeuGlnMetCysGlnT : 31 |||:!!..!:!! ! !||||||!!. :::::: :::::: ! ! !!::| GlnValGluAspCysThrTyrGluLysArgValAsnLeuSerIleProTrpAsnArgT 212837 : CAGGTCGAAGACTGTACCTACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTT : 212894 32 : rpLeuLeuLysProIleGlyValTrpProLeuValSerAsnHisThrSerLysLeuGl : 50 ||||||||||||||! |||:!!|||||| ! !!.!::!:!!..!||| !:!!|| rpLeuLeuLysProThrGlyLeuTrpPro---AspLysSerTyrValSerProIleGl 212895 : GGCTTTTGAAACCAACGGGTTTGTGGCCC---GACAAGTCCTACGTTTCACCGATCGA : 212948 51 : uGlnLeuValSerValIleLeuMetIleMetCysPheSerSerLeuLeuPheIleIle : 69 |:!! !:!!:!! !:!::!!! ! !:!:|||!:!.!!! !:!! !!:!:!!:!! uLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLeuVal 212949 : GAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTA : 213005 70 : LeuProSerPheTyrHisIlePhePheValGluLysSerValHisValLysValLysL : 89 :!!|||!!! !! :!!:!:|||.!!! !! !::::::::: ::::!!:!!| IleProCysSerLeuTyrValPheLeuAspValGluAsnIlePheLysGluIleGluL 213006 : ATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaagagaTCGAAT : 213065 90 : euLeuGlyProValGlyPheCysLeuSerSerThrIleLysTyrCysTyrLeuGlyVa : 108 ||!!!||| ! !!!.!||||||:!!:!!:!! ! |||||| !! ||| !:! euPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLe 213066 : TGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACT : 213122 109 : lLysGlyAlaPhePheGluArgCysIleGlnHisValGluLysAspTrpLysMetVal : 127 ! ! |||! ! !.!!...! !|||:!!:!!|||:!!:!! ! |||||||||! :!! uHisGlyAspAspIleArgThrCysValGluHisMetLysTyrAspTrpLysAsnIle 213123 : TCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATC : 213179 128 : GlnAspProAsnHisArgThrIleMetLeuLysTyrAlaThrValSerArgLysLeuI : 147 ! !! !.!. !!!:! !|||||| ! ! !!|||!:! !!.!!!:!!:!:!!: ThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleV 213180 : ACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAG : 213239 148 : leThrLeuCysAlaIlePheLeuTyrThrGlyGlyMetSerTyrHisThrValMetGl : 166 !:|||:!!||||||.!!|||:!!||||||||| !! !! !||| ! !|||:!:! alThrIleCysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuValValPr 213240 : TGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACC : 213296 167 : nPheLeuSerLysGlu<-><->ArgAsnLysLysAsnTyrThrPheArgProLeuThr : 183 !.!! !:!! ! :!! !.!. ! ||| |||||||||! !:!!..! oIleSerAlaAspLysMetValAlaGluAspLeuAsnValThrPheArgGlnMetVal 213297 : GATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTG : 213353 184 : TyrProGlyTyrAspSerPheLeuAspThrGlnSerSerProThrTyrGluValValP : 203 !|||! !! ! !.!!:!!|||..!!:!! !||||||..! !!|||:!! !!| ValProValSerArgPheIleValAspValArgTyrSerProValAsnGluIlePheP 213354 : GTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCT : 213413 204 : hePheLeuGlnCysPheAlaAlaMetIleMetTyrSerValThrThrValAlaTyrSe : 222 ||!!.:!!||| !.!.|||!.!:!::!:!!::!!:!!:!!.!!..!||||||! !|| heLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSe 213414 : TCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAG : 213470 223 : rLeuAlaAlaIlePheValThrHisIleCysGlyGlnIleGlnValGlnIleAlaArg : 241 ||||||||||:!:|||!.!..!||| !|||||||||!!: :!! !!!:::! !! rLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrp 213471 : CTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGG : 213527 242 : LeuHisAspLeuValGlu<->AsnGluLysArgLysAsnAsnGlyArgAspSerMetS : 260 |||.!. !!|||:!!!!: !..||| ! ! !!..!!.|||! ! !|||!!!!!:: LeuGluHisLeuIleAspGlyArgGluAspMetSerLysAsnValAspAspArgIleA 213528 : CTGGAACATTTGATAGACGGTAGAGAGGATATGAGCAAGAATGTGGACGACAGAATCG : 213587 261 : erValIleValHisAspHisValGluValLeu{Ar} >>>> Target Intron 1 : 271 !!|||||||||:!!.!.||||||..!:!!|||{!:} 840 bp laValIleValAsnGlnHisValArgIleLeu{Ly}++ 213588 : CGGTCATCGTGAACCAGCATGTGCGGATACTG{AA}gt.................... : 213624 272 : >>>> {g}PheSerLysAsnValGluGluAlaLeuArgGluIleCysLeuThrGlu : 287 {!}|||! !:!! !||||||:!!|||||||||:!!:!!! !!!!.!!||| ++{s}PheLeuGluLeuValGluLysAlaLeuArgGlnValSerPheAlaGlu 213625 : .....ag{A}TTCTTAGAGCTCGTGGAGAAAGCACTTCGGCAAGTATCTTTCGCTGAA : 214508 288 : IleValGluSerThrIleIleMetCysLeuLeuGluTyrTyrCysMetMet >>>> : 305 :!!:!!! !!!!|||:!:! !:!:||||||:!!! !|||||| !!:! ! LeuLeuValCysThrValAsnLeuCysLeuValGlyTyrTyrIleIleThr++ 214509 : TTATTAGTATGCACGGTGAATCTCTGTCTCGTTGGATATTACATAATAACGgt..... : 214564 306 : Target Intron 2 >>>> GluTrpGlnAsnSerAspAlaIleAlaIleLeuThr : 316 68 bp ||||||.!.:::!:!:!! !! !.!!! !:!!||| ++GluTrpAsnSerAsnAsnLeuThrThrThrValThr 214565 : ....................aggAATGGAATTCGAACAATTTAACAACTACAGTAACT : 214663 317 : TyrValThrLeuLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGlyG : 336 ||||||..!|||! !||||||...|||||||||||||||||||||||||||||||||| TyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyG 214664 : TACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGGCG : 214723 337 : luIleLeuThrGluGln >>>> Target Intron 3 >>>> CysSerGlnIle : 345 ||:!!:!!:!!|||||| 123 bp |||!.!:!!:!! luLeuValSerGluGln++ ++CysLysLysVal 214724 : AGCTTGTGTCTGAACAGgt.........................agTGCAAAAAGGTC : 214873 346 : GlyIleThrSerTyrGluIleGluTrpTyrGlnLeuProAlaLysLysAlaTyrAspL : 365 ||| !..!|||||| !||||||||||||!:!||||||!.!!!.||| ! ! !! GlyGluValSerTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCysC 214874 : GGAGAAGTATCGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTGTT : 214933 366 : euIleLeuLeuIleSerIleSerHisTyrProProLysLeuThrAlaGlyLysIleIl : 384 !||||||:!!!!::!!!!:|||:!!! !! !|||!!!|||||||||!!.!!::! ysIleLeuIleMetAlaMetSerAsnSerSerValLysPheThrAlaGlyAsnMetVa 214934 : GCATTTTGATCATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATGGT : 214990 385 : eGluLeuSerLeuAsnThrPheSerSerValAla : 395 !|||||||||:!!!:!|||||||||||||||::! lGluLeuSerIleSerThrPheSerSerValSer 214991 : AGAACTGTCTATCAGCACTTTCAGCAGTGTAAGT : 215025 vulgar: gi|350412763|ref|XP_003489754.1| 11 395 . KQ414889.1 212836 215025 + 649 M 29 87 G 1 0 M 130 390 G 0 6 M 76 228 G 0 3 M 23 69 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 M 33 99 5 0 2 I 0 64 3 0 2 M 37 111 5 0 2 I 0 119 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212837 215025 649 + . gene_id 3 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212837 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 212837 213621 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215025 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215025 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212837 215025 649 + . alignment_id 3 ; Query gi|350412763|ref|XP_003489754.1| ; Align 212837 12 87 ; Align 212924 42 390 ; Align 213320 172 228 ; Align 213551 248 69 ; Align 214463 272 99 ; Align 214630 305 111 ; Align 214864 342 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 608 Query range: 17 -> 409 Target range: 226912 -> 230518 18 : TyrGluAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleG : 37 |||:!!.!. !!:!::!! !:!:!!|||:!! !!::|||||||||||||||:!!| TyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuG 226913 : TATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCG : 226970 38 : lyValTrpProLeuValSerAsnHisThrSerLysLeuGluGlnLeuValSerValIl : 56 ||:!!|||||| !|||..! ! !:!|||::!:!!! !::!! ! !!||| !:! lyIleTrpPro---SerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLe 226971 : GTATCTGGCCG---TCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTT : 227024 57 : eLeuMetIleMetCysPheSerSerLeuLeuPheIleIleLeuProSerPheTyrHis : 75 ::!! .!!:!:|||!:!:!! !:!! !||| :!::!! !!||| !! :!! uMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyr 227025 : GATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTAC : 227081 76 : IlePhePheValGluLysSerValHisValLysValLysLeuLeuGlyProValGlyP : 95 :!: !!.!.! !! !|||.!!!.!:!! !! !:!!|||:!!:!!||||||:!!..!| ValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerP 227082 : GTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCT : 227141 96 : heCysLeuSerSerThrIleLysTyrCysTyrLeuGlyValLysGlyAlaPhePheGl : 114 ||! ! !! !||| !:!!||||||! ! ||| ! !! ! ! !! ! !.!! hePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLe 227142 : TCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCT : 227198 115 : uArgCysIleGlnHisValGluLysAspTrpLysMetValGlnAspProAsnHisArg : 133 ..!|||:!!:!!!..:!!:!! !|||||||||! :!!::! !!! !.!. !!||| uGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArg 227199 : CGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGA : 227255 134 : ThrIleMetLeuLysTyrAlaThrValSerArgLysLeuIleThrLeuCysAlaIleP : 153 !.!:!:|||:!!! !|||||| ! !.!!|||||||||||||||:!!|||.!!.!!| AsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPheP 227256 : AACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTT : 227315 154 : heLeuTyrThrGlyGlyMetSerTyrHisThrValMetGlnPheLeu<-><->SerLy : 170 ||:!!!:!!::... ::: ::::::! !|||:!:! .!! ! ||| heValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerVa 227316 : TCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGT : 227372 171 : sGluArgAsnLysLysAsnTyrThrPheArgProLeuThrTyrProGlyTyrAspSer : 189 ! !! !.!. ! !|||:!!!:!!:!! !! !:!! !!!:!||| ! ! ! ! lAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIle 227373 : TGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATC : 227429 190 : PheLeuAspThrGlnSerSerProThrTyrGluValValPhePheLeuGlnCysPheA : 209 .!! !|||..!!::! !|||||| ! !!|||:!! !!|||! :!!|||! ! ! . IleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValT 227430 : ATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAA : 227489 210 : laAlaMetIleMetTyrSerValThrThrValAlaTyrSerLeuAlaAlaIlePheVa : 228 !!!.!!!::!::!!:!!.!!||||||:!!!.!|||! !|||:!!||||||:!:.!!!. hrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAl 227490 : CAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGC : 227546 229 : lThrHisIleCysGlyGlnIleGlnValGlnIleAlaArgLeuHisAspLeuValGlu : 247 !..!||| !|||||||||!!::!!||| !:!::!! !!||| !!|||:!!!!: aValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAsp 227547 : GGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGAC : 227603 248 : AsnGluLysArgLysAsnAsnGlyArgAspSer<->MetSerValIleValHisAspH : 266 ..!..! ! !! !!:!!!. !! !|||..! !!::!! !|||||| ! !!| GlyArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValThrHisH 227604 : GGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACC : 227663 267 : isValGluValLeu{Ar} >>>> Target Intron 1 >>>> {g}PheSerLy : 274 |||||..!:!!|||{!.} 396 bp {!}||| ! isValArgIleLeu{As}++ ++{n}PheLeuAl 227664 : ACGTTCGAATATTG{AA}gt.........................ag{C}TTTCTGGC : 228083 275 : sAsnValGluGluAlaLeuArgGluIleCysLeuThrGluIleValGluSerThrIle : 293 !:!!|||:!!.!!:!!!:!:!!|||..!!!!..!|||.!!:!!! !!!!|||||| aLeuIleGluLysThrMetGlnGlnIleAlaPheValGluPheLeuGlyCysThrIle 228084 : CCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGTACAATA : 228140 294 : IleMetCysLeuLeuGluTyrTyrCysMetMet >>>> Target Intron 2 >> : 305 |||:!!||||||:!!||||||||| !!!:! ! 72 bp IleLeuCysLeuIleGluTyrTyrIleIleThr++ 228141 : ATTCTGTGCCTCATCGAGTATTACATCATAACGgt....................... : 228178 306 : >> GluTrpGlnAsnSerAspAlaIleAlaIleLeuThrTyrValThrLeuLeuIle : 322 ||||||.!. !.!!!: !! ! ! !:!!|||||| !.!!||||||:!! ++GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeu 228179 : ..agGAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTA : 228299 323 : SerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGln : 342 |||||||||||||||||||||||||||||||||||||||||||||:!!.!!|||!!. SerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluHis+ 228300 : TCCTTTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACg : 228359 343 : >>>> Target Intron 3 >>>> CysSerGlnIleGlyIleThrSerTyrGlu : 351 1889 bp |||!!!:!!:!!||| !! !|||||| ! + ++CysArgLysValGlyGluLysSerTyrMet 228360 : t.........................agTGCAGAAAAGTCGGCGAAAAGTCGTACATG : 230275 352 : IleGluTrpTyrGlnLeuProAlaLysLysAlaTyrAspLeuIleLeuLeuIleSerI : 371 ||||||||||||!:!||| !!!.!!!.||| ! ! !! !||||||:!!|||:!!! IleGluTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaM 230276 : ATCGAATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCA : 230335 372 : leSerHisTyrProProLysLeuThrAlaGlyLysIleIleGluLeuSerLeuAsnTh : 390 !:|||:!!! ! !! !!|||!!!|||||||||!!.!!::!!|||||||||:!!||||| etSerAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnTh 230336 : TGTCCAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACAC : 230392 391 : rPheSerSer >>>> Target Intron 4 >>>> ValAlaLysSerSerValI : 400 |||||||..! 67 bp |||!.!|||!!!|||:!! rPheSerAsp++ ++ValValLysThrSerMetG 230393 : TTTCAGCGACgt.........................agGTCGTTAAAACGTCCATGG : 230489 401 : leTyrLeuAsnLeuLeuArgThrValThr : 409 !!:!||||||:!!|||||||||:!!||| lyPheLeuAsnMetLeuArgThrLeuThr 230490 : GTTTCTTAAACATGCTACGAACACTGACG : 230518 vulgar: gi|350412763|ref|XP_003489754.1| 17 409 . KQ414889.1 226912 230518 + 608 M 23 69 G 1 0 M 127 381 G 0 6 M 90 270 G 0 3 M 12 36 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226913 230518 608 + . gene_id 4 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226913 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226913 227679 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230403 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230403 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 230404 230405 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 230404 230470 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 230469 230470 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230471 230518 . + . KQ414889.1 exonerate:protein2genome:local exon 230471 230518 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226913 230518 608 + . alignment_id 4 ; Query gi|350412763|ref|XP_003489754.1| ; Align 226913 18 69 ; Align 226982 42 381 ; Align 227369 169 270 ; Align 227642 259 36 ; Align 228077 272 99 ; Align 228248 305 111 ; Align 230248 342 156 ; Align 230471 394 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 538 Query range: 16 -> 409 Target range: 256631 -> 258738 17 : HisTyrGluAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProI : 36 :!!!:!:!!!:! !!! ! !!|||!:!||||||:!! !!:!|||!!!|||||||||| AsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 256632 : AATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTA : 256689 37 : leGlyValTrpProLeuValSerAsnHisThrSerLysLeuGluGlnLeuValSerVa : 55 |||||!.!|||||| !|||::: !|||!!!! ||||||!:! !||||||:! leGlyAlaTrpPro---ProSerSerSerThrThrThrLeuGluArgAsnValSerIl 256690 : TAGGCGCATGGCCA---CCCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGAT : 256743 56 : lIleLeuMetIleMetCysPheSerSerLeuLeuPheIleIleLeuProSerPheTyr : 74 !:!!|||! |||:!:|||!:!.!!|||:!!||||||! !:!::!!|||!!!!!. ! eValLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIleProCysLeuLeu 256744 : CGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTC : 256800 75 : HisIlePhePheValGluLysSerValHisValLysValLysLeuLeuGlyProValG : 94 |||:!!|||.!!! !!!: ! ||| !!:!::::||||||||| ...||||||:!!. HisValPheLeuAspAspAspSerPheTyrMetLysValLysAsnPheGlyProMetS 256801 : CATGTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGA : 256860 95 : lyPheCysLeuSerSerThrIleLysTyrCysTyrLeuGlyValLysGlyAlaPhePh : 113 !! !!! :!!! !||| ! !!!.||| ! ||| !:!!:!!||| ! !.! erHisTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIl 256861 : GCCATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACAT : 256917 114 : eGluArgCysIleGlnHisValGluLysAspTrpLysMetValGlnAspProAsnHis : 132 .... !|||:!!:!!|||:!!|||! !||||||!:!||||||::! !!!. !! eArgTyrCysValGluHisIleGluThrAspTrpArgMetValArgArgGluLysAsp 256918 : ACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGAT : 256974 133 : ArgThrIleMetLeuLysTyrAlaThrValSerArgLysLeuIleThrLeuCysAlaI : 152 !:! !:!:|||:!!||| !!|||! ! !!.!!||| ! :!! !|||!!!|||||| GlnGlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaA 256975 : CAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAG : 257034 153 : lePheLeuTyrThrGlyGlyMetSerTyrHisThrValMetGlnPheLeuSerLysGl : 171 !.!!:!! ! !:!||| ... ::: ..! ! ! !.!. !!!!:!! laIleMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAsnThrGluIl 257035 : CTATCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGAT : 257091 172 : uArgAsnLysLysAsnTyrThr<-><->PheArgProLeuThrTyrProGlyTyrAsp : 188 !! !:!! ! !||| ! ||| ! ||| !||| !! ! !!! !||| ! eIleHisValGlyAsnGluThrThrIleValArgValLeuProValThrValTyrLys 257092 : AATTCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAG : 257148 189 : SerPheLeuAspThrGlnSerSerProThrTyrGluValValPhePheLeuGlnCysP : 208 !.!.!.|||:!!..!.!...!||||||||| !!|||:!!||| !!|||:!!||| !! LysLeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheMetGlnThrT 257149 : AAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTT : 257208 209 : heAlaAlaMetIleMetTyrSerValThrThrValAlaTyrSerLeuAlaAlaIlePh : 227 :::!!:!!!!:||| ! !!!! !|||..! ! !!:!||||||||||||:!!|| rpSerSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAlaAlaValPh 257209 : GGTCGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTT : 257265 228 : eValThrHisIleCysGlyGlnIleGlnValGlnIleAlaArgLeuHisAspLeuVal : 246 |!.!|||||| ! !||||||:!: |||! !!::!! !!:!! !!:!!!||| eAlaThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGluPheVal 257266 : TGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTG : 257322 247 : GluAsnGluLysArgLysAsnAsnGlyArgAspSerMetSerValIleValHisAspH : 266 ||||||..!|||!!....... ...!.! !|||! ! ! ---AsnGluSerArgAsnArgGluLysThrPheProPheLysGlnIleGlyValIleV 257323 : ---AATGAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGATTG : 257379 267 : isValGluValLeuArgPheSerLysAsnValGluGluAlaLeuArgGluIleCysLe : 285 ! !.!. !|||||| ! !!:! ! ! ! !:!! !! :!:!! alGluHisHisLeuArgValLeuArg***AspPheCysIleIleSerValValTrpAs 257380 : TGGAGCATCATTTAAGAGTGCTGAGGTAAGATTTTTGCATTATTTCCGTTGTGTGGAA : 257436 286 : uThrGluIleValGluSerThrIleIleMetCysLeuLeuGluTyrTyrCysMetMet : 304 ! !|||! |||... !! !|||.!! !|||! !|||:!!!:!:!! !!!: nPheGluArgValSerValIleIlePheAlaCys***LeuGlnPheHisIleIleTyr 257437 : TTTCGAAAGGGTTTCTGTGATTATTTTTGCGTGTTAATTGCAGTTTCATATCATATAT : 257493 305 : Glu >>>> Target Intron 1 >>>> <->TrpGlnAsnSerAspAlaIleAl : 313 ..! 766 bp |||...!.....||| Arg+- ++GluTrpSerThrGlnAspIleGlnAs 257494 : CGAgg.........................aggaATGGTCTACGCaagatattcaaaa : 258289 314 : aIleLeuThrTyrValThrLeuLeuIleSerPheThrPheAsnIlePheIlePheCys : 332 ::: :::||| !!! !:!!|||||||||...:::||||||||||||:::...||| nLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValIleCys 258290 : tttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaatatgt : 258346 333 : TyrIleGlyGluIleLeuThrGluGln >>>> Target Intron 2 >>>> Cy : 342 ||||||||||||||||||||||||||| 90 bp || TyrIleGlyGluIleLeuThrGluGln++ ++Cy 258347 : tACATAGGTGAAATATTAACAGAACAGgt.........................agTG : 258466 343 : sSerGlnIleGlyIleThrSerTyrGluIleGluTrpTyrGlnLeuProAlaLysLys : 361 |!.!:!!:!!||| !..! !||| !! !!!:|||||| ! ||||||! !|||!:! sLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspLysArg 258467 : CAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGA : 258523 362 : AlaTyrAspLeuIleLeuLeuIleSerIleSerHisTyrProProLysLeuThrAlaG : 381 ! !||||||||||||:!!|||:!! !||| ! ! !:!!:!!||||||| IleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleThrAlaG 258524 : ATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGg : 258583 382 : lyLysIleIleGluLeuSerLeuAsnThrPheSerSer >>>> Target Intron : 394 |||||.........::!|||:!! !!|||||||||..! 69 bp lyLysPhePheHisMetSerIleTyrThrPheSerAsp++ 258584 : gaaaattctttcacatGTCCATTTACACATTCAGCGATgt.................. : 258624 395 : 3 >>>> ValAlaLysSerSerValIleTyrLeuAsnLeuLeuArgThrValThr : 409 ||| !|||!!!||| !! |||||||||||||||||| !|||:!! ++ValIleLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnValSer 258625 : .......agGTAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGTATCG : 258738 vulgar: gi|350412763|ref|XP_003489754.1| 16 409 . KQ414889.1 256631 258738 + 538 M 24 72 G 1 0 M 137 411 G 0 6 M 68 204 G 1 0 M 58 174 5 0 2 I 0 762 3 0 2 G 0 3 M 36 108 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256632 258738 538 + . gene_id 5 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256632 257498 . + . KQ414889.1 exonerate:protein2genome:local exon 256632 257498 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 257499 257500 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local intron 257499 258264 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258268 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258268 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256632 258738 538 + . alignment_id 5 ; Query gi|350412763|ref|XP_003489754.1| ; Align 256632 17 72 ; Align 256704 42 411 ; Align 257121 179 204 ; Align 257325 248 174 ; Align 258268 306 108 ; Align 258466 342 156 ; Align 258691 394 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 536 Query range: 23 -> 406 Target range: 262849 -> 265001 24 : TyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpProLeuValS : 43 |||!:!||||||!!: !!:!|||||||||||||||||||||!.!||||||||| | TyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeu---S 262850 : TACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTG---T : 262904 44 : erAsnHisThrSerLysLeuGluGlnLeuValSerValIleLeuMetIleMetCysPh : 62 || ! ! !|||!:!:!!|||!:!:!!:!!!!! !!:!!|||!!::!!:!:|||!: erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 63 : eSerSerLeuLeuPheIleIleLeuProSerPheTyrHisIlePhePheValGluLys : 81 !!!! !:!!|||! !! !:!!:!!||||||.!. !|||||| !!.!.! !! :!! rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 82 : SerValHisValLysValLysLeuLeuGlyProValGlyPheCysLeuSerSerThrI : 101 !:! !!|||:!!|||:!!:!!:!!|||||||||:!!||| !! !!! !.!!! !| AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 102 : leLysTyrCysTyrLeuGlyValLysGlyAlaPhePheGluArgCysIleGlnHisVa : 120 ||!!.||| !!::||| !:!! ! .!! ! !.!.:!! !!|||:!:|||||||| leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 121 : lGluLysAspTrpLysMetValGlnAspProAsnHisArgThrIleMetLeuLysTyr : 139 |:!!:!!|||||| !!:||| !.!. !!!:! !|||||||||||| !! lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 140 : AlaThrValSerArgLysLeuIleThrLeuCysAlaIlePheLeuTyrThrGlyGlyM : 159 |||! ! !.!!||| ! :!! !.!!! !||||||||||||:!! ! |||.!! !| AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 160 : etSerTyrHisThrValMetGlnPheLeuSerLys<-><->GluArgAsnLysLysAs : 176 ||!!! ! ! !|||! !||| !!!!:!! ||| !..!!!.:!!!. etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 177 : nTyrThrPheArgProLeuThrTyrProGlyTyrAspSerPheLeuAspThrGlnSer : 195 ! ! !.!.||| !||| !!! !|||! !||| ! ..!.!!:!! ..!.!.!!! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 196 : SerProThrTyrGluValValPhePheLeuGlnCysPheAlaAlaMetIleMetTyrS : 215 !:!|||||| !!|||:!! !!.!! ! !|||! !.!.:!!!.!.!.|||:!: !: AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 216 : erValThrThrValAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGlyGl : 234 !!..!|||..!! !|||!:!.!!:!!.!!|||:!:|||!.! !||| !|||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 235 : nIleGlnValGlnIleAlaArgLeuHisAspLeuVal<-><->GluAsnGluLysArg : 251 |:!:.!.||| !!!::!! !!:!! !!:!!!||| ...!..!!::!!!.! nLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsn 263484 : GTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAAT : 263540 252 : LysAsnAsnGlyArgAspSerMetSerValIleValHisAspHisValGluValLeu{ : 271 |||||| ! ! ! !..!!!:.!!|||||||||.!. !!|||:!!..!||||||{ LysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeu{ 263541 : AAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTG{ : 263600 272 : Ar} >>>> Target Intron 1 >>>> {g}PheSerLysAsnValGluGluAl : 279 !!} 839 bp {!}!:!!!!! !||| !!!::!: Se}++ +-{r}TyrCysThrAsnCysAspLysAs 263601 : AG}gt.........................at{C}TATTGCACAAATTGTGATAAaga : 264463 280 : aLeuArgGluIleCysLeuThrGluIleValGluSerThrIleIleMetCysLeuLeu : 298 ... ||| ! :!: !..!..!! !|||.!!:!:!! !:!! p---AsnPheCysLeuLeuGlnCysLeuSerArgAspIleIlePheVal***AsnIle 264464 : c---aatttttgtttacttcAGTGTTTGTCCAGGGATATAATATTTGTATGAAATATA : 264517 299 : GluTyrTyrCysMetMetGluTrpGlnAsnSerAspAlaIleAlaIleLeuThrTyrV : 318 ! ! !! !.!...!||||||:!!!:! ||| ::: !|||||| ThrIleAspValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrP 264518 : ACAATTGACGTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATATT : 264577 319 : alThrLeuLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIl : 337 !!! !:!!|||||||||.!. ! !|||||||||:!!.!.||||||||||||||||| heMetIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIl 264578 : TCATGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGAT : 264634 338 : eLeuThrGluGln >>>> Target Intron 2 >>>> CysSerGlnIleGlyI : 347 ||||||||||||| 78 bp |||!.!:!!:!!||| eLeuThrGluGln++ ++CysLysLysValGlyG 264635 : ATTGACTGAGcaggt.........................agTGTAAGAAAGTTGGTG : 264742 348 : leThrSerTyrGluIleGluTrpTyrGlnLeuProAlaLysLysAlaTyrAspLeuIl : 366 ..! !||| ! .!.|||||| ! |||||| !||| ! ! !|||||||| luValValTyrMetSerAsnTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIl 264743 : AGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACAAAGATATCCTTGATCTGAT : 264799 367 : eLeuLeuIleSerIleSerHisTyrProProLysLeuThrAlaGlyLysIleIleGlu : 385 ||||:!!|||! !! !||| ! ! !|||!!!|||||||||||||||:!!.!. eLeuIleIleLeuArgSerSerValValPheLysPheThrAlaGlyLysIleLeuHis 264800 : TCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCACCGCTGGAAAGATACTTCAC : 264856 386 : LeuSerLeuAsnThrPheSerSer >>>> Target Intron 3 >>>> ValAl : 395 :!!|||:!! !!|||||||||..! 80 bp ||| MetSerMetTyrThrPheSerAsp++ ++ValIl 264857 : ATGTCCATGTACACATTCAGTGACgt.........................aggTAAT : 264966 396 : aLysSerSerValIleTyrLeuAsnLeuLeuArg : 406 !||||||||| !!! |||||||||||||||||| eLysSerSerPheThrTyrLeuAsnLeuLeuArg 264967 : CAAATCCTCTTTCACGTACTTAAACTTACTTCGC : 265001 vulgar: gi|350412763|ref|XP_003489754.1| 23 406 . KQ414889.1 262849 265001 + 536 M 18 54 G 1 0 M 128 384 G 0 6 M 76 228 G 0 6 M 24 72 S 0 2 5 0 2 I 0 835 3 0 2 S 1 1 M 8 24 G 1 0 M 61 183 5 0 2 I 0 74 3 0 2 M 52 156 5 0 2 I 0 76 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262850 265001 536 + . gene_id 6 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262850 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262850 263601 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 264440 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264439 264440 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 264441 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264441 264648 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264726 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265001 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265001 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262850 265001 536 + . alignment_id 6 ; Query gi|350412763|ref|XP_003489754.1| ; Align 262850 24 54 ; Align 262904 43 384 ; Align 263294 171 228 ; Align 263528 247 72 ; Align 264442 272 24 ; Align 264466 281 183 ; Align 264727 342 156 ; Align 264963 394 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 492 Query range: 0 -> 123 Target range: 299620 -> 299989 1 : MetHisAspArgProTyrThrThrValAspAspGlnLeuArgAsnIleHisTyrGluA : 20 |||:!!|||||| !!! !!:!!:!||||||! !|||||||||||| !||||||:!!| MetTyrAspArgSerCysSerSerValAspGlyGlnLeuArgAsnTyrHisTyrGlnA 299621 : ATGTACGATCGATCCTGTAGCAGTGTTGACGGCCAATTGAGGAATTACCATTACCAAA : 299678 21 : snAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTr : 39 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| snAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTr 299679 : ATGACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATG : 299735 40 : pProLeuValSerAsnHisThrSerLysLeuGluGlnLeuValSerValIleLeuMet : 58 |! !|||:!!..!.!.!.!:!!||||||||||||!!.|||||||||:!!:!!|||||| pArgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMet 299736 : GCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATG : 299792 59 : IleMetCysPheSerSerLeuLeuPheIleIleLeuProSerPheTyrHisIlePheP : 78 ! !!!:|||||||||||||||!!!||||||:!!||||||||| !:!!:!!||||||| ThrIleCysPheSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePheP 299793 : ACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCT : 299852 79 : heValGluLysSerValHisValLysValLysLeuLeuGlyProValGlyPheCysLe : 97 ||!.!|||||||||:!!|||||||||||||||:!!!!!|||||||||||||||||||| heAlaGluLysSerIleHisValLysValLysValPheGlyProValGlyPheCysLe 299853 : TCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCT : 299909 98 : uSerSerThrIleLysTyrCysTyrLeuGlyValLysGlyAlaPhePheGluArgCys : 116 |||||||! !:!!||||||||||||||| !!:!!!!.|||!.! |||||||||||| uSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCys 299910 : CTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGC : 299966 117 : IleGlnHisValGluLysAsp : 123 |||||||||||||||!:!||| IleGlnHisValGluArgAsp 299967 : ATCCAACACGTCGAGAGAGAC : 299989 vulgar: gi|350412763|ref|XP_003489754.1| 0 123 . KQ414889.1 299620 299989 + 492 M 123 369 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299621 299989 492 + . gene_id 7 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299621 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299621 299989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299621 299989 492 + . alignment_id 7 ; Query gi|350412763|ref|XP_003489754.1| ; Align 299621 1 369 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 438 Query range: 18 -> 202 Target range: 294672 -> 295227 19 : GluAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyV : 38 ..!||||||:!: !!!:!|||:!! |||!:! !!||||||||||||||||||: ArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyL 294673 : AGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTC : 294730 39 : alTrpProLeuValSerAsnHisThrSerLysLeuGluGlnLeuValSerValIleLe : 57 !!|||||||||:!!! !!:!|||||||||||||||.!.:!!:!!:!!|||:!!||||| euTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLe 294731 : TTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCT : 294787 58 : uMetIleMetCysPheSerSerLeuLeuPheIleIleLeuProSerPheTyrHisIle : 76 |!!: !||| ! !!!!:!!||||||:!!:!!:!!|||!!! ||| ! ! uIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCys 294788 : GATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGT : 294844 77 : PhePheValGluLysSerValHisValLysValLysLeuLeuGlyProValGlyPheC : 96 ! ||| !! |||:::||| :::|||:!!|||||||||||||||||| !!:!! ValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrS 294845 : GTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACT : 294904 97 : ysLeuSerSerThrIleLysTyrCysTyrLeuGlyValLysGlyAlaPhePheGluAr : 115 !:!! !|||! !:!!!:!||| !!! !|||! !:!!||| ! !! |||:!!!. erMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHi 294905 : CTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCA : 294961 116 : gCysIleGlnHisValGluLysAspTrpLysMetValGlnAspProAsnHisArgThr : 134 !||||||:!! !!:!!|||!!.|||||||||:!!:!!.!.:!!|||.!.||||||.!! sCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAla 294962 : TTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCG : 295018 135 : IleMetLeuLysTyrAlaThrValSerArgLysLeuIleThrLeuCysAlaIlePheL : 154 ||||||:!!||| !!|||! !|||!!!!:!!:!:!!! !..! !! !.!!|||.!.: IleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleI 295019 : ATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAA : 295078 155 : euTyrThrGlyGlyMetSerTyrHisThrValMetGlnPheLeuSerLysGlu<->Ar : 172 !!|||!:!..!!.!:!!|||||||||.!!:!!::: |||...|||... .. leTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGl 295079 : TCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGA : 295135 173 : gAsnLysLysAsnTyrThrPheArgProLeuThrTyrProGlyTyrAspSerPheLeu : 191 !|||||||||||| !!|||.!!||| !!||| !! !|||||||||!!:! !|||:!! uAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheVal 295136 : GAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTA : 295192 192 : AspThrGlnSerSerProThrTyrGluValVal : 202 |||.!! ! ||||||||||||||||||:!!:!! AspAlaTyrSerSerProThrTyrGluIleIle 295193 : GACGCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: gi|350412763|ref|XP_003489754.1| 18 202 . KQ414889.1 294672 295227 + 438 M 153 459 G 0 3 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294673 295227 438 + . gene_id 8 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294673 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294673 295227 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294673 295227 438 + . alignment_id 8 ; Query gi|350412763|ref|XP_003489754.1| ; Align 294673 19 459 ; Align 295135 172 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 410 Query range: 23 -> 345 Target range: 259772 -> 261856 24 : TyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpProLeuValS : 43 |||!:!||||||.!. !!:!|||!!!|||||||||||||||!.!|||||| !| TyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpPro---ProS 259773 : TATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCA---CCTT : 259827 44 : erAsnHisThrSerLysLeuGluGlnLeuValSerValIleLeuMetIleMetCysPh : 62 ||::! !|||!!!!:!||||||:!!:!!:!!||||||||||||!!:.!!!!:|||!: erSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTy 259828 : CATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTA : 259884 63 : eSerSerLeuLeuPheIleIleLeuProSerPheTyrHisIlePhePheValGluLys : 81 !|||!!!:!!||| !!! !:!::!!|||!!! ! !|||!!:.!..!!! !:!!:!! rSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGlu 259885 : CAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAG : 259941 82 : SerValHisValLysValLysLeuLeuGlyProValGlyPheCysLeuSerSerThrI : 101 |||:!!:!!:!!|||..!|||:!!|||||||||:!! ! !!! !!! !.!! !| SerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysI 259942 : AGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTA : 260001 102 : leLysTyrCysTyrLeuGlyValLysGlyAlaPhePheGluArgCysIleGlnHisVa : 120 ||!!.||| ||| !:!!!:!||| ! !.!. !!!|||:!::!!||||| leAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisVa 260002 : TTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGT : 260058 121 : lGluLysAspTrpLysMetValGlnAspProAsnHisArgThrIleMetLeuLysTyr : 139 ||||!!.||||||!:!!!::!! ! !!!. !!!:!!.!:!:||||||!:!||| lGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyr 260059 : GGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATAC : 260115 140 : AlaThrValSerArgLysLeuIleThrLeuCysAlaIlePheLeuTyrThrGlyGlyM : 159 |||! ! !!.!!||| ! :!! !.!!! !|||||| !|||:!! ! !|||! !: AlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValL 260116 : GCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTC : 260175 160 : etSerTyrHisThrValMetGlnPheLeuSerLysGluArgAsnLysLysAsnTyrTh : 178 !!!!!!:! ! !|||! ! !!!. !!!!:!!! !! !.!. ! !||| ! || euCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluTh 260176 : TGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGAC : 260232 179 : r<-><->PheArgProLeuThrTyrProGlyTyrAspSerPheLeuAspThrGlnSer : 195 | !!!.!! !||| !!! ! !!! !||| ! ..!.!.:!!:!!..!.!...! rArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAsp 260233 : GAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGAC : 260289 196 : SerProThrTyrGluValValPhePheLeuGlnCysPheAlaAlaMetIleMetTyrS : 215 ||||||! ! !!|||:!!|||.!! !!:!!|||! ! !!:!!!.!.!.|||:!! !!| SerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnS 260290 : AGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATT : 260349 216 : erValThrThrValAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGlyGl : 234 || !|||..!! ! !!:!||||||||||||:!!.!...!.!!||| |||||||| erSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGl 260350 : CGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCA : 260406 235 : nIleGlnValGlnIleAlaArgLeuHisAspLeuValGlu<-><->AsnGluLysArg : 251 |:!:.!.|||! !!:! ! !!:!! !!:!!!|||!!: !...!.!:!!:! nLeuAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLys 260407 : GTTGAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAG : 260463 252 : LysAsnAsnGlyArgAspSerMetSerValIleValHisAspHisValGluValLeuA : 271 |||!!. ! ! ! ! ..!!!:.!!|||||||||.!. !!|||:!!..!!.!|||! LysLysAlaProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeuT 260464 : AAAAAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTCA : 260523 272 : rgPheSerLysAsnValGluGluAlaLeuArgGluIleCysLeuThrGluIleValGl : 290 !! ..! ! !! ! !:!!||| !!! !!!!! ! ! |||! hr***AspLeuPheAspIleThrPheValArg***ArgIlePheIleIleThrValGl 260524 : CGTAAGATTTGTTTGATATTACTTTTGTACGATAAAGGATTTTTATAATTACGGTAGG : 260580 291 : uSerThrIleIleMetCysLeu{Le} >>>> Target Intron 1 >>>> {u} : 298 !|||||||||||| |||{:!} 1109 bp {!} ySerThrIleIle***LysLeu{Il}++ -+{e} 260581 : ATCTactataatttgaaaatta{at}gt.........................tg{a} : 261715 299 : GluTyrTyrCysMetMetGluTrpGlnAsnSerAspAlaIleAlaIleLeuThrTyrV : 318 :::::: :::...|||||| .!...!||| ! ! !:!:! !|||||| TyrPhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrP 261716 : tatttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATT : 261773 319 : alThrLeuLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIl : 337 !!! !:!!||||||:!!.!! !||||||:!!||||||.!!||||||||||||||||| heMetMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIl 261774 : TCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAAT : 261830 338 : eLeuThrGluGlnCysSerGlnIle : 345 ||||||||||||| ..!!!.:!: eLeuThrGluGlnValGlnHisLeu 261831 : ACTAACGGAACAGGTACAACATTTG : 261856 vulgar: gi|350412763|ref|XP_003489754.1| 23 345 . KQ414889.1 259772 261856 + 410 M 17 51 G 1 0 M 137 411 G 0 6 M 69 207 G 0 6 M 50 150 S 0 2 5 0 2 I 0 1105 3 0 2 S 1 1 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259773 261856 410 + . gene_id 9 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259773 260605 . + . KQ414889.1 exonerate:protein2genome:local exon 259773 260605 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 260606 260607 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 260606 261714 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261713 261714 . + . intron_id 0 ; splice_site "tg" KQ414889.1 exonerate:protein2genome:local cds 261715 261856 . + . KQ414889.1 exonerate:protein2genome:local exon 261715 261856 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259773 261856 410 + . alignment_id 9 ; Query gi|350412763|ref|XP_003489754.1| ; Align 259773 24 51 ; Align 259824 42 411 ; Align 260241 179 207 ; Align 260454 248 150 ; Align 261716 299 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 397 Query range: 14 -> 271 Target range: 217147 -> 217924 15 : AsnIleHisTyrGluAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuL : 34 :!! !.!.||||||...:::|||::: ::!:!!||| ! !!::|||||||||| AspTyrGluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuL 217148 : GACTACGAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGA : 217205 35 : ysProIleGlyValTrpProLeuValSerAsnHisThrSerLysLeuGluGlnLeuVa : 53 |||||!!:|||:!!|||||| !|||..! !|||!!!!:!! !..!:!!:!!:! ysProMetGlyLeuTrpPro---AsnSerArgThrThrThrArgSerArgLysIleLe 217206 : AACCGATGGGTCTTTGGCCA---AACTCACGTACCACCACCAGATCCCGAAAAATCCT : 217259 54 : lSerValIleLeuMetIleMetCysPheSerSerLeuLeuPheIleIleLeuProSer : 72 !! ! !:!::!!! !:!:|||!:!.!!! !:!! !|||:!!.!!:!!|||!!! uTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCys 217260 : CTACAAACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGC : 217316 73 : PheTyrHisIlePhePheValGluLysSerValHisValLysValLysLeuLeuGlyP : 92 ! ! :!!:!:|||.!!! !! :!!..!:!!:!!! !|||:!!||||||!!!|||| SerMetTyrValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyP 217317 : TCCATGTACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTC : 217376 93 : roValGlyPheCysLeuSerSerThrIleLysTyrCysTyrLeuGlyValLysGlyAl : 111 ||:!! !||||||:!!! !:!! !:!!||||||! !! !||| !||| ! !|| roLeuIlePheCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAl 217377 : CGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGC : 217433 112 : aPhePheGluArgCysIleGlnHisValGluLysAspTrpLysMetValGlnAspPro : 130 | !.!!.....!|||:!:::!...:!!|||::!||||||!:!! |||::! ! ! aAspIleArgGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGlu 217434 : GGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAG : 217490 131 : AsnHisArgThrIleMetLeuLysTyrAlaThrValSerArgLysLeuIleThrLeuC : 150 !!. !!||| ! |||:!! ! !!|||!.! !!.!!|||||||||:!! !|||| LysAspArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuC 217491 : AAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCT : 217550 151 : ysAlaIlePheLeuTyrThrGlyGlyMetSerTyrHisThrValMetGlnPheLeuSe : 169 ||.!!.!!|||:!!|||!:!||| ::: |||::: !!.!!!:! !.!! ! ysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerVa 217551 : GTACCTTCTTCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGT : 217607 170 : rLysGlu<-><->ArgAsnLysLysAsnTyrThrPheArgProLeuThrTyrProGly : 186 ! !..! !.!.!!. !||| !||||||! !||||||..!!:!||| ! lGlyArgIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPhe 217608 : GGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTT : 217664 187 : TyrAspSerPheLeuAspThrGlnSerSerProThrTyrGluValValPhePheLeuG : 206 ! ! !.!!:!!||||||!::! !!!!|||||| !!|||:!!||||||||||||| ThrLysTyrIleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuG 217665 : ACGAAGTATATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTC : 217724 207 : lnCysPheAlaAlaMetIleMetTyrSerValThrThrValAlaTyrSerLeuAlaAl : 225 ||! .!!|||!.! :!:|||:!!.!!:!!|||:!!!.!|||! !||||||||||| lnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAl 217725 : AATTGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGC : 217781 226 : aIlePheValThrHisIleCysGlyGlnIleGlnValGlnIleAlaArgLeuHisAsp : 244 | !|||!.!..!||| !||||||||||||:!!||| !!!: ! !!|||!!. !! aAlaPheAlaValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHis 217782 : AGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACAT : 217838 245 : LeuValGluAsnGluLysArgLysAsnAsnGlyArgAspSer<->MetSerValIleV : 263 |||:!!!!:..!..! ! !! !!:!:!! ! !|||.!! !!::!! !|||| LeuIleAspGlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleV 217839 : TTAATCGACGGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCG : 217898 264 : alHisAspHisValGluValLeuArg : 271 || !.!.||||||..!:!!|||!:! alSerGlnHisValArgIleLeuLys 217899 : TCAGTCAACACGTTCGGATATTAAAG : 217924 vulgar: gi|350412763|ref|XP_003489754.1| 14 271 . KQ414889.1 217147 217924 + 397 M 26 78 G 1 0 M 130 390 G 0 6 M 87 261 G 0 3 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217148 217924 397 + . gene_id 10 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217148 217924 . + . KQ414889.1 exonerate:protein2genome:local exon 217148 217924 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217148 217924 397 + . alignment_id 10 ; Query gi|350412763|ref|XP_003489754.1| ; Align 217148 15 78 ; Align 217226 42 390 ; Align 217622 172 261 ; Align 217886 259 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 396 Query range: 17 -> 272 Target range: 221360 -> 222131 18 : TyrGluAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleG : 37 |||:!!!..:!!:!: ! ! !:!:!!|||:!! !!!::|||:!!||||||||||||| TyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleG 221361 : TACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCG : 221418 38 : lyValTrpProLeuValSerAsnHisThrSerLysLeuGluGlnLeuValSerValIl : 56 ||||||||||| ! !:!!||| ! !|||! !:!!|||::!! !:!!! ! !:! lyValTrpProAsnSerAlaAsn---IleSerThrValGluArgTyrLeuTyrTrpLe 221419 : GTGTTTGGCCAAATTCAGCCAAC---ATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 57 : eLeuMetIleMetCysPheSerSerLeuLeuPheIleIleLeuProSerPheTyrHis : 75 ::!!! :!!:!:|||!:!||| !:!! !|||:!!:!::!!|||!!! ! !:!! uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 76 : IlePhePheValGluLysSerValHisValLysValLysLeuLeuGlyProValGlyP : 95 :!:.!!.!!! !! !:!!..!|||:!! !!:!:!!|||||||||||||||:!!.!!| ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 96 : heCysLeuSerSerThrIleLysTyrCysTyrLeuGlyValLysGlyAlaPhePheGl : 114 |||||:!!! !:!! !:!!|||||| ! ||| !:!! ! ! ! ! !.!!.. heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 115 : uArgCysIleGlnHisValGluLysAspTrpLysMetValGlnAspProAsnHisArg : 133 ...!||||||:!!!.!:!!||| !|||||||||! :!! !! !!!!. !!!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 134 : ThrIleMetLeuLysTyrAlaThrValSerArgLysLeuIleThrLeuCysAlaIleP : 153 !||||||:!!:!! !!|||! ! !!.!!|||::!||||||! !:!!|||.!!.!!| AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 154 : heLeuTyrThrGlyGlyMetSerTyrHisThrValMetGlnPhe<->LeuSerLys<- : 171 ||:!!|||!:!||| ::: |||::: !!.!!!:! !||| :!!.!!||| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 172 : >GluArgAsnLysLysAsnTyrThrPheArgProLeuThrTyrProGlyTyrAspSer : 189 !.!. ! ||| |||||| |||:!!..!!:!||| !! ! ! eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 190 : PheLeuAspThrGlnSerSerProThrTyrGluValValPhePheLeuGlnCysPheA : 209 .!!:!!||||||!:!! !||||||..! !!|||:!!:!!|||! |||||| !.!.| IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 210 : laAlaMetIleMetTyrSerValThrThrValAlaTyrSerLeuAlaAlaIlePheVa : 228 ||!.! :!:|||:!!|||:!!|||:!!!.!|||! !||||||!.!|||!!:|||!. laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 229 : lThrHisIleCysGlyGlnIleGlnValGlnIleAlaArgLeuHisAspLeuValGlu : 247 !..!||| !|||||||||!!:|||||| !!!:::! !!||| ! !!|||:!!.!. aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 248 : AsnGluLysArgLysAsnAsnGlyArgAsp<->SerMetSerValIleValHisAspH : 266 ..!..! ! !! ! !|||..! !||| !!!!!::!! !||||||:!!.!.| GlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnH 222052 : GGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAAC : 222111 267 : isValGluValLeuArgPhe : 272 |||||..!:!!|||!:!!:! isValArgIleLeuGlnTyr 222112 : ACGTTCGAATATTGCAGTAT : 222131 vulgar: gi|350412763|ref|XP_003489754.1| 17 272 . KQ414889.1 221360 222131 + 396 M 27 81 G 1 0 M 122 366 G 0 3 M 3 9 G 0 3 M 87 261 G 0 3 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221361 222131 396 + . gene_id 11 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221361 222131 . + . KQ414889.1 exonerate:protein2genome:local exon 221361 222131 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221361 222131 396 + . alignment_id 11 ; Query gi|350412763|ref|XP_003489754.1| ; Align 221361 18 81 ; Align 221442 46 366 ; Align 221811 168 9 ; Align 221823 171 261 ; Align 222087 258 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 377 Query range: 17 -> 250 Target range: 284505 -> 285216 18 : TyrGluAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleG : 37 !::!!:!..||| |||!:!:!!|||||| !!::|||!!!||||||||||||| TrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleG 284506 : TGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTG : 284563 38 : lyValTrpProLeuValSerAsnHisThrSerLysLeuGluGlnLeuValSerValIl : 56 |||||||||||||| ! ! ! |||!!! ! !:!! ! ! !|||:! lyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLe 284564 : GCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCT : 284620 57 : eLeuMetIleMetCysPheSerSerLeuLeuPheIleIleLeuProSerPheTyrHis : 75 ! !:!:|||! |||||| !! ! !!!!.!!:!::!!! ! !:!!.!.! ! uAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThr 284621 : CGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACA : 284677 76 : IlePhePheValGluLysSerValHisValLysValLysLeuLeuGlyProValGlyP : 95 :!:.!! ! ! ..!:!! !!..!|||:!!|||:!!:!!||||||:!!.!!| ValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerP 284678 : GTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTT : 284737 96 : heCysLeuSerSerThrIleLysTyrCysTyrLeuGlyValLysGlyAlaPhePheGl : 114 |||||:!!! !:!!.!!|||||||||! ! !||| ! !:::|||!.! .!!! heCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGl 284738 : TCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGG : 284794 115 : uArgCysIleGlnHisValGluLysAspTrpLysMetVal<-><-><->GlnAspPro : 130 !:!|||:!::!! !!:!!... !||||||...:!:..! ...... yGlnCysValLysAspIleArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGlu 284795 : CCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaa : 284851 131 : AsnHisArgThrIleMetLeuLysTyrAlaThrValSerArgLysLeuIleThrLeuC : 150 ......||| |||||| ! ! !|||! !:!!.!!|||...||| ! !!!!| GluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheC 284852 : gaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCT : 284911 151 : ysAlaIlePheLeuTyrThrGlyGlyMetSerTyrHisThrValMetGlnPheLeuSe : 169 ||||| !|||:!!|||:!!||||||.!.! !||| !|||||||||! !!!.! !!! ysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysTh 284912 : GCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCAC : 284968 170 : r<->LysGluArgAsnLysLysAsnTyrThrPheArgProLeuThrTyrProGlyTyr : 187 ! ::: !..!! !! ! ||| ! ||| ! ||| !!! !.!!!:!||| !||| rValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyr 284969 : AGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTAT : 285025 188 : AspSerPheLeuAspThrGlnSerSerProThrTyrGluValValPhePheLeuGlnC : 207 !.!!.!!|||||| !!!::!!!||||||:!!!:!|||:!!||| |||:!!|||| ArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnC 285026 : CGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAAT : 285085 208 : ysPheAlaAlaMetIleMetTyrSerValThrThrValAlaTyrSerLeuAlaAlaIl : 226 ||!!.||||||.!.:!!!!:||||||||||||..!! !|||! !||||||||||||:! ysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaVa 285086 : GCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGT : 285142 227 : ePheValThrHisIleCysGlyGlnIleGlnValGlnIleAlaArgLeuHisAspLeu : 245 :||||||! !|||:!!|||||||||.!!::!:!!! :!:.!!!:!||| !! ! ||| lPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeu 285143 : GTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTC : 285199 246 : ValGluAsnGluLys : 250 |||!!:...! !||| ValAspGlyValLys 285200 : GTCGACGGAGTGAAA : 285216 vulgar: gi|350412763|ref|XP_003489754.1| 17 250 . KQ414889.1 284505 285216 + 377 M 110 330 G 0 9 M 42 126 G 0 3 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284506 285216 377 + . gene_id 12 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284506 285216 . + . KQ414889.1 exonerate:protein2genome:local exon 284506 285216 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284506 285216 377 + . alignment_id 12 ; Query gi|350412763|ref|XP_003489754.1| ; Align 284506 18 330 ; Align 284845 128 126 ; Align 284974 170 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 374 Query range: 23 -> 271 Target range: 266637 -> 267390 24 : TyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpProLeuValS : 43 |||!:!||||||:!! !!:!|||!!!|||||||||||||||!.!||||||! !:!!| TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuS 266638 : TACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGT : 266695 44 : erAsnHisThrSerLysLeuGluGlnLeuValSerValIleLeuMetIleMetCysPh : 62 || ! !|||||||||||||||!:!:!!|||||| ! !|||!!::!!!!:|||!: er---LeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266696 : CA---CTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 63 : eSerSerLeuLeuPheIleIleLeuProSerPheTyrHisIlePhePheValGluLys : 81 !!!!|||:!!||||||! !:!!:!!|||!!!!!.!:!|||:!! !!.!.! !!!::!! rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 82 : SerValHisValLysValLysLeuLeuGlyProValGlyPheCysLeuSerSerThrI : 101 |||:!!!.!..!|||||||||:!!!!!||||||:!!.!! !!! !!! !.!! !| SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 102 : leLysTyrCysTyrLeuGlyValLysGlyAlaPhePheGluArgCysIleGlnHisVa : 120 ||!!.||| ! ||| !:!!:::.!! ! .!.... !!|||:!!:!!|||:! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 121 : lGluLysAspTrpLysMetValGlnAspProAsnHisArgThrIleMetLeuLysTyr : 139 !:!!! !||||||!:!!!:||| |||.!. !!!:! !:!:||||||||| !! tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 140 : AlaThrValSerArgLysLeuIleThrLeuCysAlaIlePheLeuTyrThrGlyGlyM : 159 |||! !:!!.!!||| ! :!! !! !!!!|||||| |||:!! ! !|||! !: AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 160 : etSerTyrHisThrValMetGlnPheLeuSerLysGluArgAsnLysLysAsnTyrTh : 178 !:.!!||| !..!:!!! ! !||| !! !:!! !.!. ||| ! || euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 179 : r<-><->PheArgProLeuThrTyrProGlyTyrAspSerPheLeuAspThrGlnSer : 195 | ! !.!! !||| !!! ! !!! !||| ! !.!.!.:!!! ..!.!.!!! rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 196 : SerProThrTyrGluValValPhePheLeuGlnCysPheAlaAlaMetIleMetTyrS : 215 ||||||||| !!|||:!!|||.!! !!! !|||! ! ! :!!!.!.!.|||:!! !!| SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 216 : erValThrThrValAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGlyGl : 234 || !..!..!! !|||!:!||||||||||||:!:|||!.!.!!||| |||||||| erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 235 : nIleGlnValGlnIleAlaArgLeuHisAspLeuVal<-><->GluAsnGluLysArg : 251 |:!:...|||! !!!: ! !!:!! ! !!:!!!||| ...!..!!:!..!.! nLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsn 267272 : GCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAAT : 267328 252 : LysAsnAsnGlyArgAspSerMetSerValIleValHisAspHisValGluValLeuA : 271 |||||| ! !! !|||!.!!!:.!!|||:!!|||.!. !!|||:!!..!||||||| LysAsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeuA 267329 : AAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGA : 267388 272 : rg : 271 || rg 267389 : GG : 267390 vulgar: gi|350412763|ref|XP_003489754.1| 23 271 . KQ414889.1 266637 267390 + 374 M 20 60 G 1 0 M 134 402 G 0 6 M 68 204 G 0 6 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266638 267390 374 + . gene_id 13 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266638 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266638 267390 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 266638 267390 374 + . alignment_id 13 ; Query gi|350412763|ref|XP_003489754.1| ; Align 266638 24 60 ; Align 266698 45 402 ; Align 267106 179 204 ; Align 267316 247 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 372 Query range: 16 -> 271 Target range: 274362 -> 275136 17 : HisTyrGluAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProI : 36 :!!!:!!!:!:! !! ! !!|||!:!||||||:!! !!:!|||!!!|||||||||| AsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 274363 : AATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTA : 274420 37 : leGlyValTrpProLeuValSerAsnHisThrSerLysLeuGluGlnLeuValSerVa : 55 |||||!.!|||||||||!.!||| ! !|||!!!|||!!!|||!:!:!!:!!||| leGlyAlaTrpProLeuAlaSer---ProThrThrLysPheGluArgIleLeuSerHi 274421 : TAGGCGCGTGGCCGTTAGCCTCG---CCCACCACGAAATTCGAACGAATCCTTTCACA : 274474 56 : lIleLeuMetIleMetCysPheSerSerLeuLeuPheIleIleLeuProSerPheTyr : 74 !:::|||:::...:::|||::!!!!! !:!!|||! !! !:!!:!!||||||.!.!:! sLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIlePhe 274475 : CCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTT : 274531 75 : HisIlePhePheValGluLysSerValHisValLysValLysLeuLeuGlyProValG : 94 ||||||.!..!.|||!!::!!|||:!!|||:!!|||:!!|||||||||||||||:!!| HisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuG 274532 : CACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCG : 274591 95 : lyPheCysLeuSerSerThrIleLysTyrCysTyrLeuGlyValLysGlyAlaPhePh : 113 || !!! !!!! !.!! !|||!!.||| ! ||| !:!!:::.!! ! .! lyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIl 274592 : GTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGAT : 274648 114 : eGluArgCysIleGlnHisValGluLysAspTrpLysMetValGlnAspProAsnHis : 132 .... !!|||:!::!!|||:!!:!!! !||||||!:!!!:||| |||.!. !! eArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAsp 274649 : ACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGAT : 274705 133 : ArgThrIleMetLeuLysTyrAlaThrValSerArgLysLeuIleThrLeuCysAlaI : 152 !:! !:!:||||||||| !!|||! !:!!.!!||| ! :!! ! !!!!|||||| GlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaA 274706 : CAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGG : 274765 153 : lePheLeuTyrThrGlyGlyMetSerTyrHisThrValMetGlnPheLeuSerLys<- : 171 |||:!! ! !|||! !:!:!!!||| !..!:!!! !||| !! !:!! laPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGlnTh 274766 : CGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGAC : 274822 172 : ><->GluArgAsnLysLysAsnTyrThrPheArgProLeuThrTyrProGlyTyrAsp : 188 :!! !...!!.:!!!.! ||| ! !.! !||| !!! ! !!.!||| ! rValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLys 274823 : CGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAG : 274879 189 : SerPheLeuAspThrGlnSerSerProThrTyrGluValValPhePheLeuGlnCysP : 208 !.!.!!:!!! ..!.!.!!!||||||||| !!|||:!!|||.!! !! !|||! ! LysIleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnPheV 274880 : AAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCG : 274939 209 : heAlaAlaMetIleMetTyrSerValThrThrValAlaTyrSerLeuAlaAlaIlePh : 227 ! :!!!.!.!.|||:!! !!||| !.!!..!! !|||!:!||||||||||||:!:|| alSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPh 274940 : TGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTT : 274996 228 : eValThrHisIleCysGlyGlnIleGlnValGlnIleAlaArgLeuHisAspLeuVal : 246 |!.!.!!||| !! !||||||:!:...|||! !!!: ! !!:!! !!!:!!!||| eAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheVal 274997 : CGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTG : 275053 247 : GluAsn<-><->GluLysArgLysAsnAsnGlyArgAspSerMetSerValIleValH : 264 .!.:!! !!::::...|||||| ..!..!!!:.!!|||:!!|||. AsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValValValG 275054 : AATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCG : 275113 265 : isAspHisValGluValLeuArg : 271 !. !!|||:!!..!||||||||| luHisHisLeuArgValLeuArg 275114 : AACATCATCTGAGGGTACTCAGG : 275136 vulgar: gi|350412763|ref|XP_003489754.1| 16 271 . KQ414889.1 274362 275136 + 372 M 27 81 G 1 0 M 126 378 G 0 6 M 78 234 G 0 6 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274363 275136 372 + . gene_id 14 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274363 275136 . + . KQ414889.1 exonerate:protein2genome:local exon 274363 275136 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 274363 275136 372 + . alignment_id 14 ; Query gi|350412763|ref|XP_003489754.1| ; Align 274363 17 81 ; Align 274444 45 378 ; Align 274828 171 234 ; Align 275068 249 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 364 Query range: 17 -> 254 Target range: 278558 -> 279281 18 : TyrGluAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleG : 37 !::.!.!..||| |||!:!:!!|||||| !!::|||!!!||||||||||||| TrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleG 278559 : TGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTG : 278616 38 : lyValTrpProLeuValSerAsnHisThrSerLysLeuGluGlnLeuValSerValIl : 56 |||||||||||||| ! ! ! |||!!! ! !:!! ! ! !|||:! lyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLe 278617 : GCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCT : 278673 57 : eLeuMetIleMetCysPheSerSerLeuLeuPheIleIleLeuProSerPheTyrHis : 75 ! !:!:|||! |||||| !! ! !!!!.!!:!::!!! ! !:!!.!.! ! uAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThr 278674 : CGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACA : 278730 76 : IlePhePheValGluLysSerValHisValLysValLysLeuLeuGlyProValGlyP : 95 :!:.!! ! ! ..!:!! !!..!|||:!!|||:!!:!!||||||:!!.!!| ValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerP 278731 : GTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTT : 278790 96 : heCysLeuSerSerThrIleLysTyrCysTyrLeuGlyValLysGlyAlaPhePheGl : 114 ||||| !! !:!!||||||||||||! ! !||| ! !:::|||!.! .!!! heCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGl 278791 : TCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGG : 278847 115 : uArgCysIleGlnHisValGluLysAspTrpLysMetVal<-><-><->GlnAspPro : 130 !:!|||:!:.!. !!:!!...! !||||||...:!:..! !::... yLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGlu 278848 : CAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaa : 278904 131 : AsnHisArgThrIleMetLeuLysTyrAlaThrValSerArgLysLeuIleThrLeuC : 150 ......||| |||||| ! ! !|||! !:!!.!!|||...||| ! !!!! GluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheS 278905 : gaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCA : 278964 151 : ysAlaIlePheLeuTyrThrGlyGlyMetSerTyrHisThrValMetGln<->PheLe : 168 !!||| !|||:!!|||:!!||||||:!:! !||| !.!!||||||! ! ||| erAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAl 278965 : GCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGC : 279021 169 : uSerLysGluArgAsnLysLysAsnTyrThrPheArgProLeuThrTyrProGlyTyr : 187 ! !::: !..!! !! ! ||| ! ||| ! ||| !!! !.!!!:!||| !||| aValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyr 279022 : AGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTAT : 279078 188 : AspSerPheLeuAspThrGlnSerSerProThrTyrGluValValPhePheLeuGlnC : 207 !.!!.!!|||||| !!!::!!!||||||:!!!:!|||:!!||| |||:!!|||| ArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnC 279079 : CGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAAT : 279138 208 : ysPheAlaAlaMetIleMetTyrSerValThrThrValAlaTyrSerLeuAlaAlaIl : 226 ||!!.||||||.!.:!!:!:||||||||||||..!! !|||! !|||||| !|||:! ysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaVa 279139 : GCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGT : 279195 227 : ePheValThrHisIleCysGlyGlnIleGlnValGlnIleAlaArgLeuHisAspLeu : 245 :||||||! !|||:!!|||||||||.!!::!:!!! :!:.!!!:!||| !! ! ||| lPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeu 279196 : GTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTC : 279252 246 : ValGluAsnGluLysArgLysAsnAsn : 254 :!!!!:...! !||| !!!:!!!.!:! IleAspGlyValLysGlyArgLysSer 279253 : ATCGACGGAGTGAAAGGGAGGAAGAGC : 279281 vulgar: gi|350412763|ref|XP_003489754.1| 17 254 . KQ414889.1 278558 279281 + 364 M 110 330 G 0 9 M 39 117 G 0 3 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278559 279281 364 + . gene_id 15 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278559 279281 . + . KQ414889.1 exonerate:protein2genome:local exon 278559 279281 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278559 279281 364 + . alignment_id 15 ; Query gi|350412763|ref|XP_003489754.1| ; Align 278559 18 330 ; Align 278898 128 117 ; Align 279018 167 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 356 Query range: 18 -> 304 Target range: 204221 -> 205984 19 : GluAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyV : 38 |||.!.|||:!:...|||.!! !!::.!. :!! !:!!||| ! !:!!|||! GluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyA 204222 : GAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTG : 204279 39 : alTrpProLeuValSerAsnHisThrSerLysLeuGluGlnLeuValSerValIleLe : 57 .!||||||:!! ! !||| :!!||| !!!! !::!|||||| !! !||| laTrpProIleProValAsn---SerSerProPheThrArgLeuValArgArgIleGl 204280 : CGTGGCCGATTCCAGTGAAC---TCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGA : 204333 58 : uMetIleMetCysPheSerSerLeuLeuPheIleIleLeuProSerPheTyrHisIle : 76 ! :!!:!: !::: .........:!:|||:!!|||.!!.!!! :!!:!: uHisValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrVal 204334 : ACACGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTG : 204390 77 : PhePheValGluLysSerValHisValLysValLysLeuLeuGlyProValGlyPheC : 96 |||.!. !||||||!:!! ! ! :!!::::!!|||:!!|||||||||:!!! ! !| PheLeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnC 204391 : TTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACT : 204450 97 : ysLeuSerSerThrIleLysTyrCysTyrLeuGlyValLysGlyAlaPhePheGluAr : 115 || !! !..! !.!!||||||! ! !:!! ! !::! !! ! .!!:!!!: ysSerIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLy 204451 : GCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAA : 204507 116 : gCysIleGlnHisValGluLysAspTrpLysMetValGlnAspProAsnHisArgThr : 134 ! !!:!:.!. !:!!..!:::||||||! ! !!.! !||| !||| ||| ! sSerLeuAsnThrIleArgArgAspTrpIleGluAlaThrAspGluAsn---ArgLeu 204508 : GAGTTTGAACACCATCAGACGCGACTGGATAGAGGCTACGGATGAAAAT---CGGTTG : 204561 135 : IleMetLeuLysTyrAlaThrValSerArgLysLeuIleThrLeuCysAlaIlePheL : 154 |||.!.! !..! ! |||! !:!!.!!|||!:!:!!:!: !:!!...||| ! !: IlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrM 204562 : ATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTA : 204621 155 : euTyrThrGlyGlyMetSerTyrHisThrValMetGlnPheLeu<->SerLysGluAr : 172 !!||| !||||||:!!!!!|||...|||:!!:!:! !!.||| .!!! ! etTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleVa 204622 : TGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGT : 204678 173 : gAsnLysLysAsnTyrThrPheArgProLeuThrTyrProGlyTyrAspSerPheLeu : 191 !!.. ! ||| !|||.!.||||||||| !!! !|||! !||| |||... lThrProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePhe 204679 : AACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttcttt : 204735 192 : AspThrGlnSerSerProThrTyrGluValValPhePheLeuGlnCysPheAlaAlaM : 211 ::: !||| !!||||||!.!||||||:!!||||||.!.|||||| !.!.|||!.!. AsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyP 204736 : aacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTT : 204795 212 : etIleMetTyrSerValThrThrValAlaTyrSerLeuAlaAlaIlePheValThrHi : 230 !.:!!! |||:!!|||! !!:!! !.!!! !.!!:!!..!|||:!:|||||| !|| heValThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHi 204796 : TTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCA : 204852 231 : sIleCysGlyGlnIleGlnValGlnIleAlaArgLeuHisAspLeuValGluAsn<-> : 249 | |||.!!..!:!:::!:!! !:!: !!:!:!!:!!! ||||||!!:!!. sAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAla 204853 : CGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCG : 204909 250 : GluLysArgLysAsnAsnGlyArgAspSerMetSerValIleValHisAspHisValG : 268 !!:! !! !:!!!.. !! !!.! !.!!!::!!! !||||||.!. !!!!...!: AspMetThrGluThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrL 204910 : GACATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGA : 204969 269 : luValLeu{Ar} >>>> Target Intron 1 >>>> {g}PheSerLysAsnVa : 276 !!:!! !{||} 905 bp {|}|||! !||||||:! ysIleLys{Ar}++ ++{g}PheLeuLysAsnIl 204970 : AGATAAAG{AG}gt.........................ag{A}TTTTTAAAGAACAT : 205898 277 : lGluGluAlaLeuArgGluIleCysLeuThrGluIleValGluSerThrIleIleMet : 295 !||| ! ! !..! ! |||||||||||||||!!:|||! .!!||| !:!!:!: eGluThrIleThrGluTyrIleCysLeuThrGluMetValGlyGlyThrGlyLeuVal 205899 : TGAAACAATTACAGAGTACATTTGTTTAACCGAAATGGTGGGCGGTACGGGTCTAGTA : 205955 296 : CysLeuLeuGluTyrTyrCysMetMet : 304 ||||||:!! ! |||||| !:!:||| CysLeuValTyrTyrTyrIleLeuMet 205956 : TGTCTCGTGTATTATTACATTCTCATG : 205984 vulgar: gi|350412763|ref|XP_003489754.1| 18 304 . KQ414889.1 204221 205984 + 356 M 26 78 G 1 0 M 86 258 G 1 0 M 36 108 G 0 3 M 80 240 G 0 3 M 22 66 S 0 2 5 0 2 I 0 901 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204222 205984 356 + . gene_id 16 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 204222 204979 . + . KQ414889.1 exonerate:protein2genome:local exon 204222 204979 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 204980 204981 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 204980 205884 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 205883 205884 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 205885 205984 . + . KQ414889.1 exonerate:protein2genome:local exon 205885 205984 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 204222 205984 356 + . alignment_id 16 ; Query gi|350412763|ref|XP_003489754.1| ; Align 204222 19 78 ; Align 204300 46 258 ; Align 204558 133 108 ; Align 204669 169 240 ; Align 204912 249 66 ; Align 205886 272 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 326 Query range: 14 -> 271 Target range: 208185 -> 208962 15 : AsnIleHisTyrGluAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuL : 34 |||! !:!!|||:!!||||||:!: !!:!!.!:!!!:::!! ! !||| !|||| AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 35 : ysProIleGlyValTrpProLeuValSerAsnHisThrSerLysLeuGluGlnLeuVa : 53 || !|||||| !|||||| ! |||! !! !||| !||||||.!. ! ysIleIleGlySerTrpProArg---SerIleAspArgSerTrpLeuGluAsnSerGl 208244 : AGATAATCGGCTCCTGGCCGAGA---TCTATAGATCGTTCCTGGTTAGAGAACAGCCA : 208297 54 : lSerValIleLeuMetIleMetCysPheSerSerLeuLeuPheIleIleLeuProSer : 72 ! !:!!:!!|||! :!!:!: !! !!!!! !||| !||||||:!::!!|||!!! nHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThr 208298 : GCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACC : 208354 73 : PheTyrHisIlePhePheValGluLysSerValHisValLysValLysLeuLeuGlyP : 92 ! ! .!!.!!|||! :!!..! !!:!!! !:!!:!!|||:!!! !.!! GlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerA 208355 : GGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCG : 208414 93 : roValGlyPheCysLeuSerSerThrIleLysTyrCysTyrLeuGlyValLysGlyAl : 111 !!:!!.!!|||! !:!!! !:!! !! |||||| !:!! !|||:::! !!. laLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGl 208415 : CTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGG : 208471 112 : aPhePheGluArgCysIleGlnHisValGluLysAspTrpLysMetValGlnAspPro : 130 ! !.!...!!:!|||:!!:!!:!!|||||| ||||||!:!! |||:!! !! ! yAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGlu 208472 : TGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAG : 208528 131 : AsnHisArgThrIleMetLeuLysTyrAlaThrValSerArgLysLeuIleThrLeuC : 150 .!. !!|||! !||||||||| ! !!|||!:! !!:!!||||||||||||..!:!!| GluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleC 208529 : GAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATAT : 208588 151 : ysAlaIlePheLeuTyrThrGlyGlyMetSerTyrHisThrValMetGlnPheLeuSe : 169 ||!.! !|||:!!||| !||| ::: |||::: !!.!:!!! !.!! ! ! ysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrAr 208589 : GCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCG : 208645 170 : rLysGlu<-><->ArgAsnLysLysAsnTyrThrPheArgProLeuThrTyrProGly : 186 ! ! :!! ..!.!. |||! |||!:!||| !|||..!||||||! ! gAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProVal 208646 : AGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTT : 208702 187 : TyrAspSerPheLeuAspThrGlnSerSerProThrTyrGluValValPhePheLeuG : 206 ! ! ! !.!!||||||..!!:!! !||||||..! !!|||:!! !!!:! :!!| ProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValG 208703 : CCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTAC : 208762 207 : lnCysPheAlaAlaMetIleMetTyrSerValThrThrValAlaTyrSerLeuAlaAl : 225 ||! !!.:!!!.!.!.:!! :!!!:!:!!|||..!! !|||! !.!!|||||||| lnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAl 208763 : AATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGC : 208819 226 : aIlePheValThrHisIleCysGlyGlnIleGlnValGlnIleAlaArgLeuHisAsp : 244 |:!:.!!!.!! !||| |||||||||:!:|||:!! !!!::!! !!:!!.!. ! aLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLys 208820 : GCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAG : 208876 245 : LeuValGlu<->AsnGluLysArgLysAsnAsnGlyArgAspSerMetSerValIleV : 263 ||||||!!: ...||| ! ..!:!!!!.||| ! !.!.!!!:!!:!! !|||| LeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleV 208877 : TTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCG : 208936 264 : alHisAspHisValGluValLeuArg : 271 ||.!..!.||||||..!|||:!!!:! alGluGlnHisValArgValIleLys 208937 : TGGAGCAGCATGTTCGAGTGATCAAG : 208962 vulgar: gi|350412763|ref|XP_003489754.1| 14 271 . KQ414889.1 208185 208962 + 326 M 27 81 G 1 0 M 129 387 G 0 6 M 76 228 G 0 3 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 208962 326 + . gene_id 17 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208186 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208962 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208186 208962 326 + . alignment_id 17 ; Query gi|350412763|ref|XP_003489754.1| ; Align 208186 15 81 ; Align 208267 43 387 ; Align 208660 172 228 ; Align 208891 248 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 322 Query range: 281 -> 409 Target range: 280022 -> 280551 282 : GluIleCysLeuThrGluIleValGluSerThrIleIleMetCysLeuLeuGluTyrT : 301 !!::!!|||! ! !.!.|||||| !:!!! !||| !.!. !:!!! !..!! ! AspLeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerLeuS 280023 : GACTTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGTTGT : 280080 302 : yrCysMetMetGluTrpGlnAsnSerAspAlaIleAlaIleLeuThrTyrValThrLe : 320 !.!. !||||||:!!.!.!:!|||||||||!.!! !!!||||||:!!! !!! erValPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPh 280081 : CAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTT : 280137 321 : uLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuThr : 339 !|||||||||!!.|||||||||:!!||||||.!!|||||||||||||||||||||:!! eLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSer 280138 : TCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCC : 280194 340 : GluGln >>>> Target Intron 1 >>>> CysSerGlnIleGlyIleThrSe : 349 |||||| 74 bp |||! !:!!:!!|||:!::!!!! GluGln++ ++CysLeuLysValGlyValSerTh 280195 : GAACaggt.........................agTGCTTAAAAGTCGGCGTGTCAAC : 280298 350 : rTyrGluIleGluTrpTyrGlnLeuProAlaLysLysAlaTyrAspLeuIleLeuLeu : 368 !||| !|||!!:||||||!::||||||!.!||||||||| ! ! !|||||||||:!! rTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIle 280299 : TTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATA : 280355 369 : IleSerIleSerHisTyrProProLysLeuThrAlaGlyLysIleIleGluLeuSerL : 388 .!!:!!:!:|||:!!! ! !! !||||||||||||||||||||||||!!:||||||| PheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerL 280356 : TTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTT : 280415 389 : euAsnThrPheSerSer >>>> Target Intron 2 >>>> ValAlaLysSer : 397 ||!:!!:!|||!!!||| 71 bp ||| !|||!!! euSerSerPheCysSer++ ++ValLeuLysThr 280416 : TAAGCAGCTTCTGCAGCgt.........................agGTGTTAAAAACG : 280513 398 : SerValIleTyrLeuAsnLeuLeuArgThrValThr : 409 :!! !! !||||||!:!||||||||||||:!!||| AlaPheAlaTyrLeuSerLeuLeuArgThrLeuThr 280514 : GCATTCGCATATCTGAGCTTATTACGTACGCTTACC : 280551 vulgar: gi|350412763|ref|XP_003489754.1| 281 409 . KQ414889.1 280022 280551 + 322 M 60 180 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280023 280551 322 + . gene_id 18 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280023 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280023 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280551 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280023 280551 322 + . alignment_id 18 ; Query gi|350412763|ref|XP_003489754.1| ; Align 280023 282 180 ; Align 280277 342 156 ; Align 280504 394 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 318 Query range: 281 -> 409 Target range: 286809 -> 287338 282 : GluIleCysLeuThrGluIleValGluSerThrIleIleMetCysLeuLeuGluTyrT : 301 !!::!:|||! ! !.!.! !||| !:!!! !||| !.!. !:!!! !..!! ! AspLeuCysTyrTyrHisThrValMetAlaIleIleAlaPheValMetTyrSerLeuS 286810 : GACTTGTGTTATTACCATACTGTAATGGCAATAATTGCATTCGTCATGTACTCGTTGT : 286867 302 : yrCysMetMetGluTrpGlnAsnSerAspAlaIleAlaIleLeuThrTyrValThrLe : 320 !.!. !||||||:!!.!.|||!!:.!!|||!.!! :!!|||||| !||||| erValPhe***GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLe 286868 : CAGTTTTCTAGGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTT : 286924 321 : uLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuThr : 339 ||||:!!|||||||||||||||:!!||||||.!!|||||||||||||||||||||:!! uLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSer 286925 : GCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCC : 286981 340 : GluGln >>>> Target Intron 1 >>>> CysSerGlnIleGlyIleThrSe : 349 |||||| 74 bp |||! !:!!:!!|||:!::!!!! GluGln++ ++CysLeuLysValGlyLeuSerTh 286982 : GAACaggt.........................agtGCTTAAAAGTCGGCTTGTCAAC : 287085 350 : rTyrGluIleGluTrpTyrGlnLeuProAlaLysLysAlaTyrAspLeuIleLeuLeu : 368 !||| !|||!!:||||||!::||||||!.!|||! !||| ! ! !|||||||||:!! rTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIle 287086 : TTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATA : 287142 369 : IleSerIleSerHisTyrProProLysLeuThrAlaGlyLysIleIleGluLeuSerL : 388 .!!:!!:!:|||:!!! ! !! !||||||||||||||||||||||||!!:||||||| PheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerL 287143 : TTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTT : 287202 389 : euAsnThrPheSerSer >>>> Target Intron 2 >>>> ValAlaLysSer : 397 ||!:!!:!|||!!!||| 71 bp ||| !|||||| euSerSerPheCysSer++ ++ValLeuLysSer 287203 : TAAGCAGCTTCTGCAGCgt.........................agGTGTTGAAATCG : 287300 398 : SerValIleTyrLeuAsnLeuLeuArgThrValThr : 409 :!! !! !||||||!:!||||||||||||:!!||| AlaPheAlaTyrLeuSerLeuLeuArgThrLeuThr 287301 : GCATTCGCATATCTGAGCTTATTACGTACGCTAACC : 287338 vulgar: gi|350412763|ref|XP_003489754.1| 281 409 . KQ414889.1 286809 287338 + 318 M 60 180 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286810 287338 318 + . gene_id 19 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286810 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286810 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287220 287221 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 287220 287290 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 287289 287290 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 287291 287338 . + . KQ414889.1 exonerate:protein2genome:local exon 287291 287338 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286810 287338 318 + . alignment_id 19 ; Query gi|350412763|ref|XP_003489754.1| ; Align 286810 282 180 ; Align 287064 342 156 ; Align 287291 394 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 317 Query range: 123 -> 271 Target range: 304425 -> 304869 124 : TrpLysMetValGlnAspProAsnHisArgThrIleMetLeuLysTyrAlaThrValS : 143 !:::!!..!|||:!!..!! !!.. !!||| !!!:||||||||||||!.! !:!!. TyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetG 304426 : TATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGG : 304483 144 : erArgLysLeuIleThrLeuCysAlaIlePheLeuTyrThrGlyGlyMetSerTyrHi : 162 !!|||!!.|||! ! !:!!||||||||||||:!!||||||||||||! ! !||||| lyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHi 304484 : GTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCA : 304540 163 : sThrValMetGlnPheLeuSerLysGluArg<->AsnLysLysAsnTyrThrPheArg : 180 |||||||||||||||| !!!! ! ! ! :!!:!! ! ||| !|||.!!!:! sThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgThrIleLys 304541 : CACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAA : 304597 181 : ProLeuThrTyrProGlyTyrAspSerPheLeuAspThrGlnSerSerProThrTyrG : 200 ||||||..!|||||| !|||..!:!!!!.!!!|||..!|||!!!||||||! !|||| ProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIleTyrG 304598 : CCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACG : 304657 201 : luValValPhePheLeuGlnCysPheAlaAlaMetIleMetTyrSerValThrThrVa : 219 ||:!!|||!:!|||:!!!!.|||.!...!!.! :!!!!:||||||:!!|||.!!! luLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThrAlaGl 304658 : AATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGG : 304714 220 : lAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGlyGlnIleGlnValGln : 238 !|||! !.!!|||||||||:!!|||!.!|||||| !||||||||||||.!.:!! yAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleVal 304715 : TGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTT : 304771 239 : IleAlaArgLeuHisAspLeuValGluAsnGluLysArgLysAsnAsnGlyArgAspS : 258 !!::!!|||||| !||||||||| |||...|||..!..!::!:!! ! ! ! MetSerArgLeuGlyAspLeuVal---AsnSerLysGluSerSerAspLeuAspLysA 304772 : ATGTCTCGATTGGGTGATCTTGTC---AACAGCAAAGAATCATCTGATTTAGATAAAC : 304828 259 : erMetSerValIleValHisAspHisValGluValLeuArg : 271 !!:!:! !! !||||||.!. !!|||:!!..!:!!|||||| rgLeuIleGluIleValGluHisHisLeuArgIleLeuArg 304829 : GATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTAAGG : 304869 vulgar: gi|350412763|ref|XP_003489754.1| 123 271 . KQ414889.1 304425 304869 + 317 M 49 147 G 0 3 M 74 222 G 1 0 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304426 304869 317 + . gene_id 20 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304426 304869 . + . KQ414889.1 exonerate:protein2genome:local exon 304426 304869 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 304426 304869 317 + . alignment_id 20 ; Query gi|350412763|ref|XP_003489754.1| ; Align 304426 124 147 ; Align 304576 173 222 ; Align 304798 248 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 252 Query range: 23 -> 271 Target range: 236852 -> 237599 24 : TyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpProLeuValS : 43 |||!:!|||||| ! !!:!||| !:!!||| !||||||..!||||||! ! !!| TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheS 236853 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCT : 236910 44 : erAsnHisThrSerLysLeuGluGlnLeuValSerValIleLeuMetIleMetCysPh : 62 || |||!!.||||||::! !:!!||| !||||||! :!:!!:|||!: er---------SerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTy 236911 : CG---------TCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTA : 236958 63 : eSerSerLeuLeuPheIleIleLeuProSerPheTyrHisIlePhePheValGluLys : 81 !!!!:!!:!!|||||| |||:!!|||!!!! ! |||:!!.!..!.! !:!! ! rThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGly 236959 : CACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGG : 237015 82 : SerValHisValLysValLysLeuLeuGlyProValGlyPheCysLeuSerSerThrI : 101 !!! !!:!!..!|||||||||:!!|||||| !!:!!.!! !!! :!!! !!!!! !| ThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleI 237016 : ACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCA : 237075 102 : leLysTyrCysTyrLeuGlyValLysGlyAlaPhePheGluArgCysIleGlnHisVa : 120 ||!..||| ! ||| !:!!::! !! ! !.!....!.!! !.!!.!.|||:! leSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMe 237076 : TCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATAT : 237132 121 : lGluLysAspTrpLysMetValGlnAspProAsnHisArgThrIleMetLeuLysTyr : 139 !|||! ||||||!:!! !..! ... ::: :::|||||||||||| tGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyr 237133 : GGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTAC : 237189 140 : AlaThrValSerArgLysLeuIleThrLeuCysAlaIlePheLeuTyrThrGlyGlyM : 159 |||! ! !!|||||| ! ! ! !! !|||.!!||||||:!!:!! !||| !: AlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleL 237190 : GCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATAC : 237249 160 : etSerTyr<-><->HisThrValMetGlnPheLeuSerLysGluArgAsnLysLysAs : 176 !:.!!||| |||!.! :!! ! ! ! !...!!.|||!. euGlyTyrCysValMetThrAlaSerThrThrMetValValValValGlyAsnLysTh 237250 : TTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGAC : 237306 177 : nTyrThrPheArgProLeuThrTyrProGlyTyrAspSerPheLeuAspThrGlnSer : 195 ! ! !!!.||| !||| !!! ||| !||| ! .!!.!!||| ..!.!.!!! rThrIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThr 237307 : TACGATCTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACG : 237363 196 : SerProThrTyrGluValValPhePheLeuGlnCysPheAlaAlaMetIleMetTyrS : 215 !:! !!! ! !!!!::!!||| !!!!.! !|||! !.!!:!!!.!.!.||| ! !!! AsnThrMetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnA 237364 : AATACTATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACA : 237423 216 : erValThrThrValAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGlyGl : 234 :! !.!!! ! !!.! ||||||.!!::! !.!...!:!!||| ! !||||| snSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGl 237424 : ACAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCA : 237480 235 : nIleGlnValGlnIleAlaArgLeuHisAspLeuValGluAsnGluLysArg<-><-> : 252 |:!:...||| !!: ! !:!!.!.|||!!!|||....!.! !!:!||| nLeuSerValValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgGly 237481 : GTTGAGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGG : 237537 253 : LysAsnAsnGlyArgAspSerMetSerValIleValHisAspHisValGluValLeuA : 271 |||:!!:!! ! !|||..!!!: !!..!||||||.!.!!:|||:!!..!||||||! LysAspAspHisPheAspGluIleProThrIleValGluGluHisLeuArgValLeuL 237538 : AAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGA : 237597 272 : rg : 271 :! ys 237598 : AG : 237599 vulgar: gi|350412763|ref|XP_003489754.1| 23 271 . KQ414889.1 236852 237599 + 252 M 20 60 G 3 0 M 115 345 G 0 6 M 90 270 G 0 6 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236853 237599 252 + . gene_id 21 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236853 237599 . + . KQ414889.1 exonerate:protein2genome:local exon 236853 237599 . + . insertions 12 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 236853 237599 252 + . alignment_id 21 ; Query gi|350412763|ref|XP_003489754.1| ; Align 236853 24 60 ; Align 236913 47 345 ; Align 237264 162 270 ; Align 237540 252 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 237 Query range: 304 -> 409 Target range: 277371 -> 277842 305 : GluTrpGlnAsnSerAspAlaIleAlaIleLeuThrTyrValThrLeuLeuIleSerP : 324 ||||||...:!!||||||!.! .!!!!: !|||:!! !!! !:!!|||||||||. GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 325 : heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGln >>> : 342 !. |||||||||||| ! ! |||||||||||||||||||||||||||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 343 : > Target Intron 1 >>>> CysSerGlnIleGlyIleThrSerTyrGluIleG : 353 72 bp |||!.!:!!:!!||| ..! !||| !! . ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 354 : luTrpTyrGlnLeuProAlaLysLysAlaTyrAspLeuIleLeuLeuIleSerIleSe : 372 !.|||||| ! ||||||! !||| ! ! !:!!|||:!!|||:!!||||||! !|| snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 373 : rHisTyrProProLysLeuThrAlaGlyLysIleIleGluLeuSerLeuAsnThrPhe : 391 | ! |||:::||||||||||||:::|||::::::|||:!! !!|||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 392 : SerSer >>>> Target Intron 2 >>>> ValAlaLysSerSerValIleTy : 401 .!!..! 84 bp ||| !|||!!!!!! !! || GlyAsp++ ++ValIleLysThrThrPheAlaTy 277703 : GGCGATgt.........................agGTAATAAAAACCACTTTCgcgta : 277816 402 : rLeuAsnLeuLeuArgThrValThr : 409 |||||||:::|||||| !..!||| rLeuAsnIleLeuArgGlnThrThr 277817 : tttaaatattctacgCCAAACGACG : 277842 vulgar: gi|350412763|ref|XP_003489754.1| 304 409 . KQ414889.1 277371 277842 + 237 M 37 111 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277842 237 + . gene_id 22 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277842 237 + . alignment_id 22 ; Query gi|350412763|ref|XP_003489754.1| ; Align 277372 305 111 ; Align 277555 342 156 ; Align 277795 394 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 216 Query range: 13 -> 245 Target range: 194141 -> 194831 14 : ArgAsnIleHisTyrGluAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuL : 33 ||||||:!!:!!|||:!! |||! !.!.|||.!!:!!!:!:!:...:!! !|||| ArgAsnValAsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuL 194142 : CGCAACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTC : 194199 34 : euLysProIleGlyValTrpProLeuValSerAsnHisThrSerLysLeuGluGlnLe : 52 ||! !|||||||||:!!|||||| !! !..!::!! ! !..!!:!:!!..!! !!! euThrProIleGlyIleTrpProArgGluAspSerLeuArgAspArgValArgLeuPh 194200 : TAACACCGATCGGTATCTGGCCAAGGGAGGATTCTCTTCGCGACAGAGTCCGACTGTT : 194256 53 : uValSerValIleLeuMetIleMetCysPheSerSerLeuLeuPheIleIleLeuPro : 71 !!.!..!..! !:!!:!: |||:!!! !:!!! !|||:!!:!::!!||| eAlaGlnThrGlyValVal---------PheAlaLeuMetCysPheLeuLeuValPro 194257 : CGCTCAAACTGGCGTGGTC---------TTCGCTTTGATGTGCTTTCTACTGGTACCT : 194304 72 : SerPheTyrHisIlePhePheValGluLysSerValHisValLysValLysLeuLeuG : 91 ! ! !:!!! !!:!|||! ! :!!..!:!! ! ! :!!|||:!!:!!! HisValIleTyrThrTyrPheAspCysGluAspLeuThrArgTyrMetLysValIleA 194305 : CACGTGATCTACACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCG : 194364 92 : lyProValGlyPheCysLeuSerSerThrIleLysTyrCysTyrLeuGlyValLysGl : 110 .! !! !! !||| !!|||! !:!!! !||||||!:!!! :!! !|||!!. ! laAlaGlnValPheSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnAr 194365 : CGGCGCAAGTGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAG : 194421 111 : yAlaPhePheGluArgCysIleGlnHisValGluLysAspTrpLysMetValGlnAsp : 129 ! ! .!!..! !|||:!:! !.!.:!!|||! !.!.!::!:! |||:!! ! gLysGluIleArgPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCys 194422 : GAAAGAGATCAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGC : 194478 130 : ProAsnHisArgThrIleMetLeuLysTyrAlaThrValSerArgLysLeuIleThrL : 149 !.!. !!||| !:!:||| !!!.! !|||! !:!!.!!||| !!!! !|||| GluGluAspArgGlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrL 194479 : GAGGAGGATCGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCC : 194538 150 : euCysAlaIlePheLeuTyrThrGlyGlyMetSerTyrHisThrValMetGlnPheLe : 168 ||! ! ! !.!!! !||| !|||!.!:!! !!||||||! !:!!:!:! .!.:! euTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMe 194539 : TGTACTTGGGACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGAT : 194595 169 : uSerLysGluArgAsnLysLys<->AsnTyrThrPheArgProLeuThrTyrProGly : 186 !|||:!!..!! ! !|||:!! ||| !||| ! !|||||| !!||| !.!! tSerGluArgIleValLysGluAspAsnSerThrGlnIleProLeuProTyrLeuSer 194596 : GTCGGAGAGGATTGTCAAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGC : 194652 187 : TyrAspSerPheLeuAspThrGlnSerSerProThrTyrGluValValPhePheLeuG : 206 !! !! !|||!!!! ! !:!!..!||||||! !||||||:!!..!||| !!! !| AsnTyrValPhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerG 194653 : AACTATGTTTTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGC : 194712 207 : lnCysPheAlaAlaMetIleMetTyrSerValThrThrValAlaTyrSerLeuAlaAl : 225 || .!. !::!! |||!!:! |||..!!.! !! ! !|||||||||!.!|| lnIleLeuIleSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAl 194713 : AGATACTGATTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGC : 194769 226 : aIlePheValThrHisIleCysGlyGlnIleGlnValGlnIleAlaArgLeuHisAsp : 244 |! !.!!:!!! !||| !|||||| !.!!:!!||| ! ! !|||:!!.!. ! aThrIleIleMetHisCysCysGlyLeuPheGluValThrSerArgArgMetGluThr 194770 : TACTATTATTATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGATGGAGACT : 194826 245 : Leu : 245 :!! Ile 194827 : ATT : 194831 vulgar: gi|350412763|ref|XP_003489754.1| 13 245 . KQ414889.1 194141 194831 + 216 M 45 135 G 3 0 M 114 342 G 0 3 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194142 194831 216 + . gene_id 23 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194142 194831 . + . KQ414889.1 exonerate:protein2genome:local exon 194142 194831 . + . insertions 3 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 194142 194831 216 + . alignment_id 23 ; Query gi|350412763|ref|XP_003489754.1| ; Align 194142 14 135 ; Align 194277 62 342 ; Align 194622 176 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 199 Query range: 287 -> 400 Target range: 297409 -> 297821 288 : IleValGluSerThrIleIleMetCysLeuLeuGluTyrTyrCysMetMetGluTrpG : 307 .!!:!!!!: :::::: |||:::|||::: ...... !|||: PheIleAspLeuIleValLeuLysIle***LeuLysTyrHisPhePheGlnGlyTrpL 297410 : TTCATCGATCTtatagttttaaaaatatagttaaaatatcatttttttcaggGATGGA : 297467 308 : lnAsnSerAspAlaIleAlaIleLeuThrTyrValThrLeuLeuIleSerPheThrPh : 326 !!!.! !||| !||| ! :!!||| !! ! !!!!:!!:!!|||.!!||||| ysThrHisAspMetIlePheGlyValThrIleGlyGlyPheMetLeuSerIleThrPh 297468 : AAACTCACGATATGATTTTTGGGGTAACGATCGGCGGTTTCATGCTTTCGATCACTTT : 297524 327 : eAsnIlePheIlePheCys{T} >>>> Target Intron 1 >>>> {yr}Ile : 334 ||||||||||:!!!!.|||{:} 73 bp {!!}! ! eAsnIlePheValLeuCys{H}-+ -+{is}Thr 297525 : TAATATATTCGTATTATGT{C}at.........................cg{AT}ACA : 297621 335 : GlyGluIleLeuThrGluGlnCysSerGlnIleGlyIleThrSerTyrGluIleGluT : 354 ..!... !:!!:!! |||..!..!:!!.!!|||! !.!!:!!|||.!.||||||| AsnSer***ValSerCysGlnAlaGluLysPheGlyAsnAlaAlaTyrAsnIleGluT 297622 : AATAGCTAAGTTTCTTGTCAGGCTGAAAAATTCGGCAATGCAGCTTATAACATCGAAT : 297681 355 : rpTyrGlnLeuProAlaLysLysAlaTyrAspLeuIleLeuLeuIleSerIleSerHi : 373 |||||.!.|||||| !!!!.!:!||| !||||||:!:|||:!!|||.!!|||:!! ! rpTyrAsnLeuProProAsnArgAlaLeuAspLeuValLeuMetIleGlyIleAlaLy 297682 : GGTACAACTTACCGCCAAACAGGGCTCTCGATCTGGTGTTAATGATCGGTATAGCAAA : 297738 374 : sTyrProProLysLeuThrAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSer : 392 !:!||||||!:!||||||...|||||||||...::::::|||:!!|||||||||||| sPheProProArgLeuThrGlyGlyLysIlePheAspIleSerIleAsnThrPheSer 297739 : ATTTCCACCGAGGCTCACAggtggaaaaatattcgatatatCGATAAACACGTTCAGT : 297795 393 : SerValAlaLysSerSerValIle : 400 :!!||| !!::...|||:::||| AlaValArgArgGlnSerLeuIle 297796 : GCCGTACGTAgacaaagtttaatt : 297821 vulgar: gi|350412763|ref|XP_003489754.1| 287 400 . KQ414889.1 297409 297821 + 199 M 45 135 S 0 1 5 0 2 I 0 69 3 0 2 S 1 2 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297410 297821 199 + . gene_id 24 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 297410 297545 . + . KQ414889.1 exonerate:protein2genome:local exon 297410 297545 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 297546 297547 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 297546 297618 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 297617 297618 . + . intron_id 0 ; splice_site "CG" KQ414889.1 exonerate:protein2genome:local cds 297619 297821 . + . KQ414889.1 exonerate:protein2genome:local exon 297619 297821 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297410 297821 199 + . alignment_id 24 ; Query gi|350412763|ref|XP_003489754.1| ; Align 297410 288 135 ; Align 297621 334 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 271 -> 341 Target range: 234524 -> 234914 272 : PheSerLysAsnValGluGluAlaLeuArgGluIleCysLeuThrGluIleValGluS : 291 |||! !::!|||:!!|||.!.!.!:!!!.! !|||||||||..!|||:!:|||! !! PheIleArgAsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuValGlyC 234525 : TTTATACGGAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGAT : 234582 292 : erThrIleIleMetCysLeuLeuGluTyr{Ty} >>>> Target Intron 1 >> : 301 !!|||:!:! !||||||:!!|||||||||{!!} 180 bp ysThrLeuAsnMetCysMetLeuGluTyr{**}-+ 234583 : GCACGTTGAACATGTGCATGCTCGAGTAT{TA}tt....................... : 234616 302 : >> {r}CysMetMetGluTrpGlnAsnSerAspAlaIleAlaIleLeuThrTyrVal : 318 { }|||!!::!: ! |||.!.!..... ::: !:!!|||||| +-{*}CysIleLeuThrSerGlnGluLysSerLysGluLysLeuAlaSerTyrVal 234617 : ..aa{A}TGTATTTTAACTTCTCAGGAAAAgtcgaaggaaaaattagCTTCATACGTC : 234843 319 : ThrLeuLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleL : 338 ! !:!!! !:!:|||.!.||||||||||||||||||||||||||||||||||||! | IleValTyrValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluThrL 234844 : ATCGTGTACGTGTCCATGACATTtaatatattcatattttgttACATCGGAGAGACGC : 234903 339 : euThrGluGln : 341 ||||||||||| euThrGluGln 234904 : TTACAGAGCAG : 234914 vulgar: gi|350412763|ref|XP_003489754.1| 271 341 . KQ414889.1 234524 234914 + 146 M 29 87 S 0 2 5 0 2 I 0 176 3 0 2 S 1 1 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234525 234914 146 + . gene_id 25 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234525 234613 . + . KQ414889.1 exonerate:protein2genome:local exon 234525 234613 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234614 234615 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 234614 234793 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234792 234793 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 234794 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234794 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234525 234914 146 + . alignment_id 25 ; Query gi|350412763|ref|XP_003489754.1| ; Align 234525 272 87 ; Align 234795 302 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 344 -> 395 Target range: 206251 -> 206404 345 : IleGlyIleThrSerTyrGluIleGluTrpTyrGlnLeuProAlaLysLysAlaTyrA : 364 :!:|||:!:||||||! ! !:!:.!.||||||!::|||||| !!:! ! ||| !. ValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgS 206252 : GTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCT : 206309 365 : spLeuIleLeuLeuIleSerIleSerHisTyrProProLysLeuThrAlaGlyLysIl : 383 .!:!!||||||:!!|||:!!!!:|||:!!|||||| !||||||||||||||||||!! erMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMe 206310 : CTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAAT : 206366 384 : eIleGluLeuSerLeuAsnThrPheSerSerValAla : 395 :.!!|||:!!|||||| !!:!|||!!!..!|||::! tPheGluMetSerLeuAlaSerPheThrAspValSer 206367 : GTTCGAAATGTCTTTAGCTAGTTTCACCGATGTAAGT : 206404 vulgar: gi|350412763|ref|XP_003489754.1| 344 395 . KQ414889.1 206251 206404 + 141 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206252 206404 141 + . gene_id 26 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206252 206404 . + . KQ414889.1 exonerate:protein2genome:local exon 206252 206404 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206252 206404 141 + . alignment_id 26 ; Query gi|350412763|ref|XP_003489754.1| ; Align 206252 345 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 300 -> 341 Target range: 210651 -> 210774 301 : TyrCysMetMetGluTrpGlnAsnSerAspAlaIleAlaIleLeuThrTyrValThrL : 320 !:! !:!: !||||||.!.::!!.!||| !!|||::!! !|||||||||:!!..!| PheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValL 210652 : TTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTAC : 210709 321 : euLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuTh : 339 |||||! !||| !!||||||||||||||||||||||||||||||||||||:!:|||.! euLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAl 210710 : TCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGC : 210766 340 : rGluGln : 341 !|||||| aGluGln 210767 : TGAACAg : 210774 vulgar: gi|350412763|ref|XP_003489754.1| 300 341 . KQ414889.1 210651 210774 + 139 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210652 210774 139 + . gene_id 27 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 210652 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210652 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210652 210774 139 + . alignment_id 27 ; Query gi|350412763|ref|XP_003489754.1| ; Align 210652 301 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 292 -> 341 Target range: 219292 -> 219439 293 : IleIleMetCysLeuLeuGluTyrTyrCysMetMetGluTrpGlnAsnSerAspAlaI : 312 ||| ::: ||| :::::: ... !||||||:!!:::!:!|||!.!! IleTyrValAsnLeuTyrLysPheGluTyrGln***GluTrpLysSerAsnAspValT 219293 : atttacgttaatttgtataaatttgaatatcaatAGGAATGGAAATCGAATGATGTAA : 219350 313 : leAlaIleLeuThrTyrValThrLeuLeuIleSerPheThrPheAsnIlePheIlePh : 331 ::! !:!!||||||:!!! !||||||||||||.!.|||||||||||||||||||| hrSerAlaValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePh 219351 : CGAGTGCAGTGACATACATCATTCTACTTATATCCCTcactttcaacattttcatatt : 219407 332 : eCysTyrIleGlyGluIleLeuThrGluGln : 341 |||||||||||||||||||:!!.!!|||||| eCysTyrIleGlyGluIleValAlaGluGln 219408 : ttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: gi|350412763|ref|XP_003489754.1| 292 341 . KQ414889.1 219292 219439 + 138 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219293 219439 138 + . gene_id 28 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219293 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219293 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219293 219439 138 + . alignment_id 28 ; Query gi|350412763|ref|XP_003489754.1| ; Align 219293 293 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 268 -> 343 Target range: 304930 -> 305217 269 : ValLeuArgPheSerLysAsnValGluGluAlaLeuArgGluIleCysLeuThrGluI : 288 :!!! !||||||||| !! |||:!! !!.!|||!:!|||:!!|||!!! !|||. IleTyrArgPheSerAlaIleValGlnThrValLeuGlnGluValCysPheLeuGluP 304931 : ATTTATAGATTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTTCTTGGAAT : 304988 289 : leValGluSerThrIleIleMet >>>> Target Intron 1 >>>> CysLeu : 297 !!:!!! |||||| :!!:!! 65 bp !!! heIleGlySerThr---LeuLeu-+ ++GluPhe 304989 : TCATTGGTTCTACC---TTACTGat.........................agGAGTTC : 305077 298 : LeuGluTyrTyrCysMetMetGluTrpGlnAsnSerAspAlaIleAlaIleLeuThrT : 317 ||| ||| ..!!!:|||:!!!:!|||:!!.!!:!!::!:!! !|||| LeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrThrT 305078 : TTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACAT : 305137 318 : yrValThrLeuLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGl : 336 ||..!..!|||||||||||| ! ||||||||||||||||||!!.|||||||||||||| yrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGl 305138 : ATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGA : 305194 337 : uIleLeuThrGluGlnCysSer : 343 |||||||! !|||:!! ||| uIleLeuMetGluLysValSer 305195 : GATTCTTATGGAAAAGGTGagt : 305217 vulgar: gi|350412763|ref|XP_003489754.1| 268 343 . KQ414889.1 304930 305217 + 138 M 24 72 G 1 0 M 2 6 5 0 2 I 0 61 3 0 2 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304931 305217 138 + . gene_id 29 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 304931 305008 . + . KQ414889.1 exonerate:protein2genome:local exon 304931 305008 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 305009 305010 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 305009 305073 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305072 305073 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305074 305217 . + . KQ414889.1 exonerate:protein2genome:local exon 305074 305217 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304931 305217 138 + . alignment_id 29 ; Query gi|350412763|ref|XP_003489754.1| ; Align 304931 269 72 ; Align 305003 294 6 ; Align 305074 296 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 338 -> 395 Target range: 234979 -> 235150 339 : ThrGluGlnCysSerGlnIleGlyIleThrSerTyrGluIleGluTrpTyrGlnLeuP : 358 |||:!!||||||!!!:!!:!!||| !! ! !||| !! !|||||||||!:!|||| ThrGlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuP 234980 : ACTCAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTAC : 235037 359 : roAlaLysLysAlaTyrAspLeuIleLeuLeuIleSerIleSerHisTyrProProLy : 377 || !|||! ||| !! !|||:!!:!!:!!||||||! ||| ! ! !|| roHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLy 235038 : CTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAA : 235094 378 : sLeuThrAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSerSerValAla : 395 |:!!||||||||||||.!!:!!:!!:!!|||:!! ||||||.!!..!|||::! sIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspValSer 235095 : AATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTGAGT : 235150 vulgar: gi|350412763|ref|XP_003489754.1| 338 395 . KQ414889.1 234979 235150 + 134 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234980 235150 134 + . gene_id 30 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234980 235150 . + . KQ414889.1 exonerate:protein2genome:local exon 234980 235150 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234980 235150 134 + . alignment_id 30 ; Query gi|350412763|ref|XP_003489754.1| ; Align 234980 339 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 340 -> 399 Target range: 238625 -> 238802 341 : GlnCysSerGlnIleGlyIleThrSerTyrGluIleGluTrpTyrGlnLeuProAlaL : 360 ||||||! !:!!:!!||| !..! !||| !! !!!:|||||| ! |||||| !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 361 : ysLysAlaTyrAspLeuIleLeuLeuIleSerIleSerHisTyrProProLysLeuTh : 379 :!!:! ! !||||||||||||:!!|||!.! !|||:!! ! !|||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 380 : rAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSerSerValAlaLysSerSer : 398 ||||||||||:!!:!!.!.:!!|||||| !!||||||.!!..!|||::!:!!!!!!:! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 399 : Val : 399 :!! Leu 238798 : CTT : 238802 vulgar: gi|350412763|ref|XP_003489754.1| 340 399 . KQ414889.1 238625 238802 + 132 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238802 132 + . gene_id 31 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238802 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238802 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238802 132 + . alignment_id 31 ; Query gi|350412763|ref|XP_003489754.1| ; Align 238626 341 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 340 -> 400 Target range: 254271 -> 254451 341 : GlnCysSerGlnIleGlyIleThrSerTyrGluIleGluTrpTyrGlnLeuProAlaL : 360 ||||||! !:!!:!!||| !..! !||| !! !!!:|||||| ! |||||| !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 361 : ysLysAlaTyrAspLeuIleLeuLeuIleSerIleSerHisTyrProProLysLeuTh : 379 :!!:! ! !||||||||||||:!!|||!!! !|||:!! ! !:!!:!!|| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 380 : rAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSerSerValAlaLysSerSer : 398 |||||||||||||......:::|||||| !!||||||.!!..!|||::!:!!!!!!:! rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 254443 399 : ValIle : 400 :!!:!! LeuVal 254444 : CTTGTT : 254451 vulgar: gi|350412763|ref|XP_003489754.1| 340 400 . KQ414889.1 254271 254451 + 132 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254451 132 + . gene_id 32 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254451 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254451 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254451 132 + . alignment_id 32 ; Query gi|350412763|ref|XP_003489754.1| ; Align 254272 341 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 340 -> 400 Target range: 244655 -> 244835 341 : GlnCysSerGlnIleGlyIleThrSerTyrGluIleGluTrpTyrGlnLeuProAlaL : 360 ||||||! !:!!:!!||| !..! !||| !! !!!:|||||| ! |||||| !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 361 : ysLysAlaTyrAspLeuIleLeuLeuIleSerIleSerHisTyrProProLysLeuTh : 379 :!!:! ! !||||||||||||:!!|||!.! !|||:!! ! !:!!:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 380 : rAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSerSerValAlaLysSerSer : 398 ||||||||||:!!:!!.!.:!!|||||| !!||||||.!!..!|||::!:!!!!!!.! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrLys 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAA : 244827 399 : ValIle : 400 :!!:!! LeuVal 244828 : CTTGTT : 244835 vulgar: gi|350412763|ref|XP_003489754.1| 340 400 . KQ414889.1 244655 244835 + 131 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244835 131 + . gene_id 33 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244835 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244835 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244835 131 + . alignment_id 33 ; Query gi|350412763|ref|XP_003489754.1| ; Align 244656 341 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 341 -> 395 Target range: 219512 -> 219674 342 : CysSerGlnIleGlyIleThrSerTyrGluIleGluTrpTyrGlnLeuProAlaLysL : 361 ||| :::|||||| |||||| !||||||||||||!:!||| !!!.!|||| CysArgLysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysL 219513 : TGtaggaaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGA : 219570 362 : ysAlaTyrAspLeuIleLeuLeuIleSerIleSerHisTyrProProLysLeuThrAl : 380 || ! ! !:!!||| !|||:!!!!:|||:!!! ! !! !||||||||||| ysLysLeuTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAl 219571 : AAAAGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGC : 219627 381 : aGlyLysIleIleGluLeuSerLeuAsnThrPheSerSerValAla : 395 ||||!!.!!::!!|||||||||:!!!:!||||||!!!..!|||::: aGlyAsnMetValGluLeuSerIleSerThrPheThrAspValSer 219628 : CGGAAATATGGTCGAATTGTCTATCAGCACTTTTACCGACGTGAGt : 219674 vulgar: gi|350412763|ref|XP_003489754.1| 341 395 . KQ414889.1 219512 219674 + 129 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219513 219674 129 + . gene_id 34 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219513 219674 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219674 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219513 219674 129 + . alignment_id 34 ; Query gi|350412763|ref|XP_003489754.1| ; Align 219513 342 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 304 -> 344 Target range: 272836 -> 272956 305 : GluTrpGlnAsnSerAspAlaIleAlaIleLeuThrTyrValThrLeuLeuIleSerP : 324 |||||| :!! !||| ! ::!:!! !|||||| !!! !:!!|||||||||. GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 325 : heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGlnCysSe : 343 !.|||||||||||||||||| |||||||||||||||||||||||||||::! ! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArgValMe 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGGTAAT : 272951 344 : rGln : 344 ||| tGln 272952 : gcaa : 272956 vulgar: gi|350412763|ref|XP_003489754.1| 304 344 . KQ414889.1 272836 272956 + 125 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 272956 125 + . gene_id 35 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272837 272956 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272956 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 272956 125 + . alignment_id 35 ; Query gi|350412763|ref|XP_003489754.1| ; Align 272837 305 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 302 -> 341 Target range: 224317 -> 224434 303 : MetMetGluTrpGlnAsnSerAspAlaIleAlaIleLeuThrTyrValThrLeuLeuI : 322 .!....||||||...:::||| !! !! !::! :!!|||||| !!! !||||||! PheGlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuM 224318 : TTTCaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCA : 224375 323 : leSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGl : 341 !:|||...||||||||||||||||||||||||||||||||||||:!::!!.!!||||| etSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl 224376 : TGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAca : 224432 342 : n : 341 | n 224433 : g : 224434 vulgar: gi|350412763|ref|XP_003489754.1| 302 341 . KQ414889.1 224317 224434 + 123 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224318 224434 123 + . gene_id 36 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224318 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224318 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224318 224434 123 + . alignment_id 36 ; Query gi|350412763|ref|XP_003489754.1| ; Align 224318 303 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 340 -> 394 Target range: 273014 -> 273176 341 : GlnCysSerGlnIleGlyIleThrSerTyrGluIleGluTrpTyrGlnLeuProAlaL : 360 ||||||...:::|||||| ..! !||| !! .!.|||||| ! ||||||!.!| GlnCysLysLysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProGlyL 273015 : cagtgtaaaaaaattggcGAGGTAGTTTACATGACGAACTGGTACTATTTACCCGGCA : 273072 361 : ysLysAlaTyrAspLeuIleLeuLeuIleSerIleSerHisTyrProProLysLeuTh : 379 || ! ! !||||||||||||:!!||||||! !!!! ! ! ! !|||:!!|| ysAspIleLeuAspLeuIleLeuIleIleSerArgCysSerValValIleLysIleTh 273073 : AAGATATCCTCGATCTGATTTTGATCATCTCAAGATGCAGTGTTGTGATTAAAATCAC : 273129 380 : rAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSerSerVal : 394 |||||||!:!|||:!! :!!|||:!! !!||||||.!!..!||| rAlaGlyArgIleValProMetSerValTyrThrPheGlyAspVal 273130 : CGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTCGGCGATGTA : 273176 vulgar: gi|350412763|ref|XP_003489754.1| 340 394 . KQ414889.1 273014 273176 + 121 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 273015 273176 121 + . gene_id 37 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 273015 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 273015 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 273015 273176 121 + . alignment_id 37 ; Query gi|350412763|ref|XP_003489754.1| ; Align 273015 341 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1280 Query range: 0 -> 405 Target range: 256601 -> 258738 1 : MetThrAsnLysThrValAlaIleLysIleAspPheAspGlyArgSerAspTyrSerL : 20 |||||||||:!! !!.!!.!:!!|||! :!!||| ! .!! !||||||||||||| MetThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerL 256602 : ATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTC : 256659 21 : euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerPheProSerTh : 39 |||||||||||||||||||||||||||||||||||||||||||| !!! !!||||| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 256660 : TCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCAC : 256716 40 : rSerArgLeuGluArgIleMetSerPheValLeuIleValIleCysTyrIleIleLeu : 58 |!!!! !|||||||||! !:!:|||.!!||||||! !:!!:!!|||||| ! !:!! rThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIle 256717 : TACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATA : 256773 59 : IleCysThrIleIleProCysLeuLeuHisIleIleLeuGluAsnGluSerPheArgI : 78 :!:! !|||:!:||||||||||||||||||:!!.!!|||!!::!!!!:|||||| : LeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrM 256774 : TTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAca : 256833 79 : leLysLeuArgLeuIleGlyProValSerTyrLeuCysValGlySerIleAsnTyrTh : 97 ::|||:::::: ...||||||:!!|||:!!! ! !:!!.!!!!! !|||||||| etLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrTh 256834 : tgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACAC : 256890 98 : rThrLeuLeuLeuArgGlyLysAspIleArgTyrCysValGluHisMetGlnThrAsp : 116 | !|||||||||!:!||||||||||||||||||||||||||||||!!::!!|||||| rLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAsp 256891 : GTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGAT : 256947 117 : TrpArgThrValLysArgGluLysAspGlnGlnValMetLeuLysSerAlaLysPheG : 136 ||||||! !|||!:!||||||||||||||||||||||||:!!|||!:!|||!:!|||| TrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheG 256948 : TGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCG : 257007 137 : lyArgTyrValThrAlaSerThrAlaAlaPheMetGlnGlyGlyValPheCysTyrCy : 155 |||||||||||.!!.!!! ! !||||||.!!||||||.!!||||||||||||::: lyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePh 257008 : GTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttctt : 257064 156 : sPheMetThrAlaLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal : 174 !:!!||||||!:!||||||:!!|||!!.|||||||||||||||! !|||||| eValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleVal 257065 : cgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTG : 257121 175 : HisGlnLeuProTyrValIleTyrLysGluLeuIleAspIleAsnGluSerProThrA : 194 !.. !|||||| !..!:!:||||||:!!|||:!::!!:!!:!!:!!|||||||||| ArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrA 257122 : CGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGA : 257181 195 : snGluIleIleLeuPheMetGlnPheLeuThrGlyPheIleValSerSerSerThrLe : 213 ||||||||:!::!!||||||||| !! !:!!..!.!!|||!.!!!!!!!||||||:! snGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrVa 257182 : ACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGT : 257238 214 : uGlyIleLeuSerIleThrValValLeuIleAlaHisAlaCysGlyGlnLeuAsnVal : 232 !.!!|||!!!|||:!!.!!!.!|||!!! !.!!||||||! !|||||||||!.!||| lSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrVal 257239 : TAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTG : 257295 233 : ValMetThrTrpIleThrGluPheValAsnGluSerArg<->LysGluLysIleAlaP : 251 :!!|||:!!|||||||||||||||||||||||||||||| :::|||||| | LeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheP 257296 : CTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttc : 257355 252 : roPheGluAsnIleGlyIleIleValGluArgHisLeuArgThrLeu{Se} >>>> : 267 |||||:!!.!.||||||:!:|||||||||!.!|||||||||..!|||{||} roPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Se}++ 257356 : ctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt..... : 257407 268 : Target Intron 1 >>>> {r}PheValSerSerIleGluGluThrValAsnArg : 278 76 bp {|}|||:!!|||! !|||||||||..!:!!|||||| ++{r}PheIleSerTyrIleGluGluValMetAsnArg 257408 : ....................ag{T}TTCATATCATATATCGAGGAAGTGATGAACCGA : 257512 279 : IlePhePheLeuGluValLeuArgSerThrLeuHisMetCysMetLeuSerTyrTyrI : 298 |||! !|||||||||:!!!!!|||!!!|||||| !!!:|||||||||.!!||||||| IleCysPheLeuGluLeuPheArgCysThrLeuAlaIleCysMetLeuGlyTyrTyrI 257513 : ATATGTTTTTTAGAGTTGTTTAGATGCACGCTGGCTATATGCATGCTGGGATACTACA : 257572 299 : leValThr >>>> Target Intron 2 >>>> GluTrpSerAspSerAspIle : 307 ||:!!.!! 684 bp ||||||||| ...|||||| leLeuAla++ ++GluTrpSerThrGlnAspIle 257573 : TTCTTGCGgt.........................aggaATGGTCTACGCaagatatt : 258283 308 : GlnIleLeuThrThrTyrSerMetLeuLeuAlaSerIleCysPheAsnIlePheValI : 327 ||| |||::::::|||! !|||:!!||| !|||::: |||||||||||||||| GlnAsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValI 258284 : caaaatttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaa : 258343 328 : leCysTyrIleGlyGluThrLeuThrGluGln >>>> Target Intron 3 >>> : 338 |||||||||||||||||! !|||||||||||| 90 bp leCysTyrIleGlyGluIleLeuThrGluGln++ 258344 : tatgttACATAGGTGAAATATTAACAGAACAGgt........................ : 258378 339 : > SerArgLysValGlyAspValValTyrMetAlaAsnTrpTyrTyrLeuThrGluL : 356 !!!!:!||||||||||||||||||||||||.!!:!!|||||||||||| !!!!:| ++CysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspL 258379 : .agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACA : 258520 357 : ysArgIleLeuGluLeuIleLeuIleIleMetArgSerSerValValValGluIleTh : 375 |||||||||||!!:|||||||||:!!||| ||||||||||||||||||:!!||||| ysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleTh 258521 : AAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCAC : 258577 376 : rAlaGlyLysIleIleHisMetSerIleGlnThrPheSerThr >>>> Target I : 390 ||||||||||......|||||||||||| ! ||||||||| ! 69 rAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAsp++ 258578 : CGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATgt............. : 258624 391 : ntron 4 >>>> ValIleLysThrAlaPheThrTyrLeuAsnLeuLeuArgGlnVa : 404 bp ||||||||||||:!!|||.!!||||||||||||||||||||||| ++ValIleLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnVa 258625 : ............agGTAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGT : 258733 405 : lThr : 405 |:!! lSer 258734 : ATCG : 258738 vulgar: gi|350422503|ref|XP_003493183.1| 0 405 . KQ414889.1 256601 258738 + 1280 M 245 735 G 0 3 M 21 63 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256602 258738 1280 + . gene_id 1 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256602 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256602 257404 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256602 258738 1280 + . alignment_id 1 ; Query gi|350422503|ref|XP_003493183.1| ; Align 256602 1 735 ; Align 257340 246 63 ; Align 257482 268 99 ; Align 258265 301 111 ; Align 258466 338 156 ; Align 258691 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1040 Query range: 0 -> 337 Target range: 259721 -> 261844 1 : MetThrAsnLysThrValAlaIleLysIleAspPheAspGlyArgSerAspTyrSerL : 20 ||||||||||||:!!||| !:!!:!!! ..!||| !.!!!.!||||||||||||| MetThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerL 259722 : ATGACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCC : 259779 21 : euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerPheProSerTh : 39 |||||!!!|||||||||||||||||||||||||||||||||||| !!! !!||||| euGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 259780 : TCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCAC : 259836 40 : rSerArgLeuGluArgIleMetSerPheValLeuIleValIleCysTyrIleIleLeu : 58 |!!!|||||||||!:!|||!!:||| !!:!!|||||| !!|||||||||! !! !:!! rThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIle 259837 : GACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATA : 259893 59 : IleCysThrIleIleProCysLeuLeuHisIleIleLeuGluAsnGluSerPheArgI : 78 :!: !|||:!:|||||||||:!!||||||!!::!!||||||!!.||||||!!. !! LeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrM 259894 : CTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACA : 259953 79 : leLysLeuArgLeuIleGlyProValSerTyrLeuCysValGlySerIleAsnTyrTh : 97 !:||| !!:!:!!:!!||||||:!!!!!:!!! !! !||||||!!!||||||||||| etLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrTh 259954 : TGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACAC : 260010 98 : rThrLeuLeuLeuArgGlyLysAspIleArgTyrCysValGluHisMetGlnThrAsp : 116 |||||||||||||||||||!:!||||||! ! !||||||||||||:!!:!!!.!||| rThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAsp 260011 : AACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGAT : 260067 117 : TrpArgThrValLysArgGluLysAspGlnGlnValMetLeuLysSerAlaLysPheG : 136 ||||||! !:!!! !|||||||||||||||.!.|||||||||!:!! !|||||||||| TrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheG 260068 : TGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCG : 260127 137 : lyArgTyrValThrAlaSerThrAlaAlaPheMetGlnGlyGlyValPheCysTyrCy : 155 |||||||||||.!!|||||| !|||||||||:!!||||||||||||.!.|||!:!|| lyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCy 260128 : GCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTG : 260184 156 : sPheMetThrAlaLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal : 174 |!!.:!:|||!.!||||||||||||||||||||||||||||||||||||||||||||| sLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal 260185 : TTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTT : 260241 175 : HisGlnLeuProTyrValIleTyrLysGluLeuIleAspIleAsnGluSerProThrA : 194 |||! !||||||! !!.!:!:|||||||||||||||:!!:!:|||!!:||||||! !| HisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetA 260242 : CATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGA : 260301 195 : snGluIleIleLeuPheMetGlnPheLeuThrGlyPheIleValSerSerSerThrLe : 213 ||||||||:!!||| !!:!!||||||:!!:!!||||||||||||!:!|||||||||:! snGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrVa 260302 : ACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGT : 260358 214 : uGlyIleLeuSerIleThrValValLeuIleAlaHisAlaCysGlyGlnLeuAsnVal : 232 !||||||!!!|||:!!.!!!.!||||||! !||||||||||||||||||||||||||| lGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnVal 260359 : TGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTG : 260415 233 : ValMetThrTrpIleThrGluPheValAsnGluSerArg<->LysGluLysIleAlaP : 251 :!!||| !||||||||||||||||||:!!||||||||| !:!:!!|||! |||| LeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaP 260416 : CTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTC : 260475 252 : roPheGluAsnIleGlyIleIleValGluArgHisLeuArgThrLeuSerPheValSe : 270 |||||:!!.!.||||||:!:|||||||||!.!|||||||||.!!|||!!!! ! !! roPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeuThr***AspLe 260476 : CTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTCACGTAAGATTT : 260532 271 : rSerIleGluGluThrValAsnArgIlePhePheLeuGluValLeuArgSerThrLeu : 289 !! ! ! !|||... !! .!!|||:!! ..!:!! !!||||||::: uPheAspIleThrPheValArg***ArgIlePheIleIleThrValGlySerThrIle 260533 : GTTTGATATTACTTTTGTACGATAAAGGATTTTTATAATTACGGTAGGATCTactata : 260589 290 : HisMetCysMet{Le} >>>> Target Intron 1 >>>> {u}SerTyrTyrI : 298 :::{:!} 1109 bp {!} ::::::: Ile***LysLeu{Il}++ -+{e}TyrPhePheL 260590 : atttgaaaatta{at}gt.........................tg{a}tatttctttc : 261725 299 : leValThrGluTrpSerAspSerAspIleGlnIleLeuThrThrTyrSerMetLeuLe : 317 ::::: ||||||:!!!!:..!|||||||||! !|||:!!||||||! !|||:!!|| euLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheMetMetLe 261726 : ttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCATGATGCT : 261782 318 : uAlaSerIleCysPheAsnIlePheValIleCysTyrIleGlyGluThrLeuThrGlu : 336 | !:!!||||||||||||:!!|||:!!||||||||||||||||||! !||||||||| uIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLeuThrGlu 261783 : GATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACTAACGGAA : 261839 337 : Gln : 337 ||| Gln 261840 : CAG : 261844 vulgar: gi|350422503|ref|XP_003493183.1| 0 337 . KQ414889.1 259721 261844 + 1040 M 245 735 G 0 3 M 48 144 S 0 2 5 0 2 I 0 1105 3 0 2 S 1 1 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259722 261844 1040 + . gene_id 2 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259722 260605 . + . KQ414889.1 exonerate:protein2genome:local exon 259722 260605 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260606 260607 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 260606 261714 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261713 261714 . + . intron_id 0 ; splice_site "tg" KQ414889.1 exonerate:protein2genome:local cds 261715 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261715 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259722 261844 1040 + . alignment_id 2 ; Query gi|350422503|ref|XP_003493183.1| ; Align 259722 1 735 ; Align 260460 246 144 ; Align 261716 295 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 914 Query range: 0 -> 300 Target range: 266586 -> 267558 1 : MetThrAsnLysThrValAlaIleLysIleAspPheAspGlyArgSerAspTyrSerL : 20 |||.!!|||:!!:!!:!!!.!|||:!! :!!.!.:!!.!!! !||||||||||||| MetAlaAsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerL 266587 : ATGGCTAACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCC : 266644 21 : euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerPheProSerTh : 39 |||||||||||||||||||||||||||||||||||||||||||| !!!!. !! !|| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuTh 266645 : TGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCAC : 266701 40 : rSerArgLeuGluArgIleMetSerPheValLeuIleValIleCysTyrIleIleLeu : 58 ||||!:!||||||||||||:!:|||!:!!.!|||||||||||||||||| ! !:!! rSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIle 266702 : ATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATA : 266758 59 : IleCysThrIleIleProCysLeuLeuHisIleIleLeuGluAsnGluSerPheArgI : 78 :!:! !|||:!!||||||||||||!!!|||:!!:!!||||||:!!||||||.!!|||! LeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgT 266759 : CTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTA : 266818 79 : leLysLeuArgLeuIleGlyProValSerTyrLeuCysValGlySerIleAsnTyrTh : 97 |||:!!!:!:!!.!!||||||:!!|||:!!! !! !||||||.!!||||||||||| hrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrTh 266819 : CGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACAC : 266875 98 : rThrLeuLeuLeuArgGlyLysAspIleArgTyrCysValGluHisMetGlnThrAsp : 116 ||||||||||||||||.!!|||!!:|||||| !|||||||||||||||||||||||| rThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAsp 266876 : CACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGAT : 266932 117 : TrpArgThrValLysArgGluLysAspGlnGlnValMetLeuLysSerAlaLysPheG : 136 ||||||! !|||! ||| !:!!|||:!!|||||||||||||||!:!|||!:!.!!| TrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleG 266933 : TGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCG : 266992 137 : lyArgTyrValThrAlaSerThrAlaAlaPheMetGlnGlyGlyValPheCysTyrCy : 155 ||||||||:!!.!! !! ! !||||||||||||||| !!||||||.!! !!||||| lyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCy 266993 : GTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTG : 267049 156 : sPheMetThrAlaLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal : 174 | ! !!:||||||!!!!!!! !:!!..!:!::!!|||||||||||||||||||||||| sValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleVal 267050 : TGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTA : 267106 175 : HisGlnLeuProTyrValIleTyrLysGluLeuIleAspIleAsnGluSerProThrA : 194 |||! !||||||! !!.!:!!||||||:!!:!!|||! :!!:!! |||||||||| HisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrA 267107 : CATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGA : 267166 195 : snGluIleIleLeuPheMetGlnPheLeuThrGlyPheIleValSerSerSerThrLe : 213 ||||||||:!!||| !! ||||||:!!:!!||||||||||||!:!||||||..!:! snGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValVa 267167 : ACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGT : 267223 214 : uGlyIleLeuSerIleThrValValLeuIleAlaHisAlaCysGlyGlnLeuAsnVal : 232 !||| !!!!|||:!!.!!!.!|||!!! |||||||||||||||||||||!:!||| lGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerVal 267224 : CGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTG : 267280 233 : ValMetThrTrpIleThrGluPheValAsnGluSerArg<->LysGluLysIleAlaP : 251 :!!|||! !||||||! !||||||||||||..!|||||| !...!.|||! !!.! LeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValC 267281 : CTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTT : 267340 252 : roPheGluAsnIleGlyIleIleValGluArgHisLeuArgThrLeu{Se} >>>> : 267 !|||!!:!!.||||||:!::!!||||||!.!|||||||||..!|||{||} ysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 267341 : GCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG}gt..... : 267392 268 : Target Intron 1 >>>> {r}PheValSerSerIleGluGluThrValAsnArg : 278 69 bp {|}|||:!!:!! !!||||||.....!:!!!:!..! ++{r}PheIleAlaArgIleGluSerValMetSerGlu 267393 : ....................ag{C}TTCATAGCACGTATCGAAAGTGTAATGAGCGAA : 267490 279 : IlePhePheLeuGluValLeuArgSerThrLeuHisMetCysMetLeuSerTyrTyrI : 298 |||! !|||:!!|||:!!!!!!:!!!!|||:!! !!!!:|||:!!||||||||||||| IleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSerTyrTyrI 267491 : ATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCTATTATA : 267550 299 : leValThr : 300 ||:!!||| leLeuThr 267551 : TCCTTACG : 267558 vulgar: gi|350422503|ref|XP_003493183.1| 0 300 . KQ414889.1 266586 267558 + 914 M 245 735 G 0 3 M 21 63 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266587 267558 914 + . gene_id 3 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266587 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266587 267389 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267558 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267558 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266587 267558 914 + . alignment_id 3 ; Query gi|350422503|ref|XP_003493183.1| ; Align 266587 1 735 ; Align 267325 246 63 ; Align 267460 268 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 905 Query range: 1 -> 300 Target range: 274335 -> 275309 2 : ThrAsnLysThrValAlaIleLysIleAspPheAspGlyArgSerAspTyrSerLeuG : 21 !.!||| .!!:!! !:!!! :!!||||||.!!! !|||||||||||||||| AsnAsnCysAlaIleAsnValThrAlaAsnPheAspSerLeuSerAspTyrSerLeuG 274336 : AACAACTGTGCGATAAACGTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGC : 274393 22 : lnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerPheProSerThrSe : 40 |||||||||||||||||||||||||||||||||||||||||! ! ! !! !!|||!! lnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaSerProThrTh 274394 : AATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCAC : 274450 41 : rArgLeuGluArgIleMetSerPheValLeuIleValIleCysTyrIleIleLeuIle : 59 !!:!!!!|||||||||:!:||| !:::|||||| :::|||||| !.!!:!!:!! rLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeu 274451 : GAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTGCTTCATACTC : 274507 60 : CysThrIleIleProCysLeuLeuHisIleIleLeuGluAsnGluSerPheArgIleL : 79 ! !|||:!!|||||| !!:!!!!!||||||||||||! !:!!||||||.!!!.!:!:| SerThrValIleProSerIlePheHisIleIleLeuValAspGluSerLeuHisLeuL 274508 : TCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGA : 274567 80 : ysLeuArgLeuIleGlyProValSerTyrLeuCysValGlySerIleAsnTyrThrTh : 98 |||||!:!|||:!!||||||:!!.!!:!!! !! !:!!|||.!!|||||||||||||| ysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrTh 274568 : AGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCAC : 274624 99 : rLeuLeuLeuArgGlyLysAspIleArgTyrCysValGluHisMetGlnThrAspTrp : 117 |||||||||||||.!!|||!!:|||||| !||||||||||||||||||||||||||| rLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrp 274625 : GCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGG : 274681 118 : ArgThrValLysArgGluLysAspGlnGlnValMetLeuLysSerAlaLysPheGlyA : 137 |||! !|||! ||| !:!!|||||||||||||||||||||!:!||||||.!!|||| ArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyA 274682 : AGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTC : 274741 138 : rgTyrValThrAlaSerThrAlaAlaPheMetGlnGlyGlyValPheCysTyrCysPh : 156 ||||||||.!! !! ! !||||||||||||||| !!||||||.!!||||||||| ! rgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysVa 274742 : GTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGT : 274798 157 : eMetThrAlaLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleValHis : 175 !!:||||||!!!!!!! !:!!..!:!!|||||||||||||||||||||! !|||||| lIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrArgThrValHis 274799 : GATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCAT : 274855 176 : GlnLeuProTyrValIleTyrLysGluLeuIleAspIleAsnGluSerProThrAsnG : 195 ..!||||||! ! ! !||||||:!!:!!:!!! :!::!! !||||||||||||| MetLeuProCysLysAlaTyrLysLysIleValAlaValAspThrSerProThrAsnG 274856 : ATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACG : 274915 196 : luIleIleLeuPheMetGlnPheLeuThrGlyPheIleValSerSerSerThrLeuGl : 214 |||||:!!||| ! !||||||:!!:!!||||||||||||!:!||||||.!!:!!|| luIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerSerAlaValGl 274916 : AGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGG : 274972 215 : yIleLeuSerIleThrValValLeuIleAlaHisAlaCysGlyGlnLeuAsnValVal : 233 | !!!!|||:!!.!!!.!|||!!! |||||||||! !|||||||||!:!|||:!! yAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeu 274973 : CGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTG : 275029 234 : MetThrTrpIleThrGluPheValAsnGluSerArg<->LysGluLysIleAlaProP : 252 |||! !|||||||||||||||||||||.!.|||||| :::...||| ... | MetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsnLysAsnValTyrP 275030 : ATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatt : 275089 253 : heGluAsnIleGlyIleIleValGluArgHisLeuArgThrLeu{Se} >>>> Tar : 267 ||....!.||||||:!::!!||||||!.!|||||||||..!|||{||} heSerGluIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 275090 : tcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTC{AG}gt........ : 275138 268 : get Intron 1 >>>> {r}PheValSerSerIleGluGluThrValAsnArgIle : 279 74 bp {|}|||:!!:!! !!||||||!!:..!:!!||||||||| ++{r}PheIleAlaArgIleGluAspValMetAsnArgIle 275139 : .................ag{T}TTCATAGCACGTATCGAGGATGTGATGAATCGAATA : 275244 280 : PhePheLeuGluValLeuArgSerThrLeuHisMetCysMetLeuSerTyrTyrIleV : 299 ! !|||:!!|||:!!!!!!:!!!!|||||| !!||||||||||||.!!|||||||||: CysPheMetGluLeuPheLysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleL 275245 : TGCTTCATGGAATTGTTCAAGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTC : 275304 300 : alThr : 300 !!||| euThr 275305 : TCACG : 275309 vulgar: gi|350422503|ref|XP_003493183.1| 1 300 . KQ414889.1 274335 275309 + 905 M 244 732 G 0 3 M 21 63 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274336 275309 905 + . gene_id 4 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274336 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274336 275135 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275309 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275309 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274336 275309 905 + . alignment_id 4 ; Query gi|350422503|ref|XP_003493183.1| ; Align 274336 2 732 ; Align 275071 246 63 ; Align 275211 268 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 807 Query range: 16 -> 390 Target range: 232456 -> 235147 17 : AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerP : 36 !!:||||||:!!|||:!!|||||||||||||||! !|||!!:|||||||||||| !! GluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgV 232457 : GAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTG : 232514 37 : heProSerThrSerArgLeuGluArgIleMetSerPheValLeuIleValIleCysTy : 55 !! !!..!||||||||| !:!!!:!:!!:!::!! :!!|||! !:!!! !|||:! alThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHi 232515 : TTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCA : 232571 56 : rIleIleLeuIleCysThrIleIleProCysLeuLeuHisIleIleLeuGluAsnGlu : 74 ! !:!::!!|||! !:!!|||:!!||||||:!!||| !|||:!:!!!|||:!! ! sSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThr 232572 : TTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACG : 232628 75 : SerPheArgIleLysLeuArgLeuIleGlyProValSerTyrLeuCysValGlySerI : 94 |||.!...! !!:!:!!!:!! !|||||||||:!!|||:!!!!! :!!|||..!: SerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluL 232629 : AGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAAT : 232688 95 : leAsnTyrThrThrLeuLeuLeuArgGlyLysAspIleArgTyrCysValGluHisMe : 113 !:|||||| ! !|||||| !!:!!.!!!.||||||! !||||||||||||!!.:! euAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnVa 232689 : TGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGT : 232745 114 : tGlnThrAspTrpArgThrValLysArgGluLysAspGlnGlnValMetLeuLysSer : 132 !:!! !|||||||||!.!||||||!:! !!!::.!.:!!|||||||||!:! lLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsn 232746 : GAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAAC : 232802 133 : AlaLysPheGlyArgTyrValThrAlaSerThrAlaAlaPheMetGlnGlyGlyValP : 152 ||||||.!!||||||! :!!.!!..!! !.!!||| !! !|||!!. !|||||| AlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValG 232803 : GCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCG : 232862 153 : heCysTyrCysPheMetThrAlaLeuSerThrGluValIleGlnValGlyAsnGluTh : 171 !! ! !! .!.:!:|||!.!||| !!! !.....!.!! ! ||||||||||||!: lySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSe 232863 : GCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAG : 232919 172 : rArgIleValHisGlnLeuProTyrValIleTyrLysGluLeuIleAspIleAsnGlu : 190 ! ! :!!:!!! !||||||! !..!.!!|||! !:!!|||!!:|||! !!.. rTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPhe 232920 : TTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTC : 232976 191 : SerProThrAsnGluIleIleLeuPheMetGlnPheLeuThrGlyPheIleValSerS : 210 ||||||||||||||||||!!:!!! !!:!:|||! !|||:!!||||||||||||!:!| SerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnS 232977 : AGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACT : 233036 211 : erSerThrLeuGlyIleLeuSerIleThrValValLeuIleAlaHisAlaCysGlyGl : 229 || !|||:!!||| !! !.!!:!! !!.!|||||| !|||||||||||||| erValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGl 233037 : CCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACA : 233093 230 : nLeuAsnValValMetThrTrpIleThrGluPheValAsnGluSerArgLysGluLys : 248 ||||||||||||||||:!! :!: !!!:!!.|||:!!! !!.! !!:!!|||:!! nLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGlyGlnGluGlu 233094 : GCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAGGAGGAG : 233150 249 : IleAlaProPheGluAsnIleGlyIleIleValGluArgHisLeuArgThrLeu{Se} : 267 ! !!.! !! ..!!!.:!!|||.!!|||||||||!.!|||||||||||||||{||} ArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeu{Se} 233151 : AGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTA{AG} : 233207 268 : >>>> Target Intron 1 >>>> {r}PheValSerSerIleGluGluThrVa : 276 1315 bp {|}|||:!! !!!:!||||||.!...!:! ++ ++{r}PheIleArgAsnIleGluAsnValMe 233208 : gt.........................ag{T}TTTATACGGAATATAGAGAACGTTAT : 234549 277 : lAsnArgIlePhePheLeuGluValLeuArgSerThrLeuHisMetCysMetLeuSer : 295 !|||! !|||! !.!.:!!|||:!!:!! !!!!!||||||:!!||||||||||||..! tAsnLeuIleCysLeuValGluLeuValGlyCysThrLeuAsnMetCysMetLeuGlu 234550 : GAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACGTTGAACATGTGCATGCTCGAG : 234606 296 : TyrTyrIleValThr >>>> Target Intron 2 >>>> GluTrpSerAspSe : 305 ||||||:!!:!!||| 189 bp ||| ||| TyrTyrLeuLeuThr++ ++GluLysSerLys-- 234607 : TATTATTTACTCACGgt.........................agGAAAAgtcgaag-- : 234825 306 : rAspIleGlnIleLeuThrThrTyrSerMetLeuLeuAlaSerIleCysPheAsnIle : 324 ::: |||.!!:!!||| !!!::!!! !!.!|||!!: ||||||||| -------GluLysLeuAlaSerTyrValIleValTyrValSerMetThrPheAsnIle 234826 : -------gaaaaattagCTTCATACGTCATCGTGTACGTGTCCATGACATTtaatata : 234873 325 : PheValIleCysTyrIleGlyGluThrLeuThrGluGln >>>> Target Intro : 338 |||:::...|||||||||||||||||||||||||||||| 74 bp PheIlePheCysTyrIleGlyGluThrLeuThrGluGln++ 234874 : ttcatattttgttACATCGGAGAGACGCTTACAGAGCAGgt................. : 234917 339 : n 3 >>>> SerArgLysValGlyAspValValTyrMetAlaAsnTrpTyrTyrLeu : 353 !!!! !|||||||||!!: !|||||||||.!!.!.|||||| ||| ++CysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeu 234918 : ........agTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTA : 235034 354 : ThrGluLysArgIleLeuGluLeuIleLeuIleIleMetArgSerSerValValValG : 373 !!.!.|||! ! !|||! |||:!!:!!|||||| |||||||||:!!|||:!!: ProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleL 235035 : CCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAA : 235094 374 : luIleThrAlaGlyLysIleIleHisMetSerIleGlnThrPheSerThrVal : 390 !!|||||||||||||||.!!:!!!!.||||||:!! !||||||.!! !||| ysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235095 : AAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: gi|350422503|ref|XP_003493183.1| 16 390 . KQ414889.1 232456 235147 + 807 M 250 750 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 33 99 5 0 2 I 0 185 3 0 2 M 4 12 G 3 0 M 30 90 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232457 235147 807 + . gene_id 5 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232457 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232457 233208 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232457 235147 807 + . alignment_id 5 ; Query gi|350422503|ref|XP_003493183.1| ; Align 232457 17 750 ; Align 234525 268 99 ; Align 234813 301 12 ; Align 234825 308 90 ; Align 234989 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 778 Query range: 10 -> 266 Target range: 262828 -> 263599 11 : AspPheAspGlyArgSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI : 30 ..!|||! !.!!! !||||||||||||||||||:!!|||||||||.!.|||||||||| SerPheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProI 262829 : AGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGA : 262886 31 : leGlyAlaTrpProSerPheProSerThrSerArgLeuGluArgIleMetSerPheVa : 49 |||||||||||||| !! ! !!|||! !||||||:!!|||||||||!!:!!!|||:! leGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPheLe 262887 : TCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCT : 262943 50 : lLeuIleValIleCysTyrIleIleLeuIleCysThrIleIleProCysLeuLeuHis : 68 !|||||||||:!!|||||| !:!!:!!:!!! !|||:!!||||||! !:!!|||||| uLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeuHis 262944 : CTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCAT : 263000 69 : IleIleLeuGluAsnGluSerPheArgIleLysLeuArgLeuIleGlyProValSerT : 88 |||:!!|||||| !|||!:!|||!.!!!:||||||!:!:!!:!!||||||:!!.!! IleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyG 263001 : ATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTC : 263060 89 : yrLeuCysValGlySerIleAsnTyrThrThrLeuLeuLeuArgGlyLysAspIleAr : 107 ! ! !! !||||||! !|||||||||||| !|||||||||!.!.!!|||||||||!: lnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGl 263061 : AGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACA : 263117 108 : gTyrCysValGluHisMetGlnThrAspTrpArgThrValLysArgGluLysAspGln : 126 ! !||||||:!!|||:!!||| !|||||| !!! !|||! ||| !:!!|||||| nGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAspGln 263118 : AGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAA : 263174 127 : GlnValMetLeuLysSerAlaLysPheGlyArgTyrValThrAlaSerThrAlaAlaP : 146 !:::!!|||||||||!:!||||||!:!||||||||||||.!!|||||| !||| !| ArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIleP 263175 : CGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCT : 263234 147 : heMetGlnGlyGlyValPheCysTyrCysPheMetThrAlaLeuSerThrGluValIl : 165 |||||||| !.!!:!!.!.||| ! |||.!.:!:||||||!!!!!!|||:!!||||| heMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnValIl 263235 : TCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGAT : 263291 166 : eGlnValGlyAsnGluThrArgIleValHisGlnLeuProTyrValIleTyrLysGlu : 184 |:!!! !||||||||||||||||||:!!!.!..!||||||! ! !:!:||||||||| eGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLysGlu 263292 : CGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAG : 263348 185 : LeuIleAspIleAsnGluSerProThrAsnGluIleIleLeuPheMetGlnPheLeuT : 204 :!!||| :!!:!! !!:!|||||||||||||||.!!||| !! !|||||||||: IleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuS 263349 : ATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGT : 263408 205 : hrGlyPheIleValSerSerSerThrLeuGlyIleLeuSerIleThrValValLeuIl : 223 !!||||||||||||!!!:!!!!!|||:!!||| !!!!.!!!!:|||!.!|||!!! erGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAl 263409 : CGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGC : 263465 224 : eAlaHisAlaCysGlyGlnLeuAsnValValMetThrTrpIleThrGluPheValAsn : 242 !!.!||||||||||||||||||||||||:!!|||:!!||||||||||||||||||||| aGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAsn 263466 : CGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAAC : 263522 243 : GluSerArgLysGlu<->LysIleAlaProPheGluAsnIleGlyIleIleValGluA : 261 :!!|||||| ! ||| |||! ! ! !||| .!.||||||:!:|||||||||! GlnSerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValGluH 263523 : CAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAAC : 263582 262 : rgHisLeuArgThrLeu : 266 .!|||||||||..!||| isHisLeuArgValLeu 263583 : ATCATCTGAGAGTTCTG : 263599 vulgar: gi|350422503|ref|XP_003493183.1| 10 266 . KQ414889.1 262828 263599 + 778 M 237 711 G 0 3 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262829 263599 778 + . gene_id 6 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262829 263599 . + . KQ414889.1 exonerate:protein2genome:local exon 262829 263599 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262829 263599 778 + . alignment_id 6 ; Query gi|350422503|ref|XP_003493183.1| ; Align 262829 11 711 ; Align 263543 248 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 599 Query range: 1 -> 273 Target range: 236804 -> 237617 2 : ThrAsnLysThrValAlaIleLysIleAspPheAspGlyArgSerAspTyrSerLeuG : 21 !.!:!!|||||||||!.!! !:!!|||:!!.!. !!.!!!!|||||||||||||||| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuG 236805 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCC : 236862 22 : lnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerPheProSerThrSe : 40 ||! !||||||||| :!!||| !||||||.!!||||||..!||| :!!|| lnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPhe------SerSe 236863 : AGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTC------TCGTC : 236913 41 : rArgLeuGluArgIleMetSerPheValLeuIleValIleCysTyrIleIleLeuIle : 59 |!.!|||||||||! !!!:||| :!!|||! !||||||||||||! ! !:!!:!! rAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeu 236914 : GAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTA : 236970 60 : CysThrIleIleProCysLeuLeuHisIleIleLeuGluAsnGluSerPheArgIleL : 79 ! !:!!||||||||||||! !||||||:!!!!:||||||!!.! !!!!||| !! | PheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrL 236971 : TTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGA : 237030 80 : ysLeuArgLeuIleGlyProValSerTyrLeuCysValGlySerIleAsnTyrThrTh : 98 ||:!!!:!:!!:!!||| !!:!!|||:!!! ! !! !!! !|||!:!||||||! ysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMe 237031 : AAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCAT : 237087 99 : rLeuLeuLeuArgGlyLysAspIleArgTyrCysValGluHisMetGlnThrAspTrp : 117 !|||||||||||| !!||| !||||||:!!! ! !!.!.||||||:!!||||||||| tLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrp 237088 : GCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGG : 237144 118 : ArgThrValLysArgGluLysAspGlnGlnValMetLeuLysSerAlaLysPheGlyA : 137 ||||||..! |||:::::: ::::::||||||||||||! !|||||||||.!!| ArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerA 237145 : AGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTC : 237204 138 : rgTyrValThrAlaSerThrAlaAlaPheMetGlnGlyGlyValPheCysTyrCysPh : 156 |||||!.!.!! !||| !.!! !|||!!:!!.||||||:!!.!! ! |||||| ! rgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysVa 237205 : GATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGT : 237261 157 : eMetThrAlaLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleValHis : 175 !|||||||||! !!!!||| !|||:!! !|||||||||:!!|||! !|||:!!!.! lMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLeuArg 237262 : TATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGC : 237318 176 : GlnLeuProTyrValIleTyrLysGluLeuIleAspIleAsnGluSerProThrAsnG : 195 !||||||! !!!:||||||! !|||:!! :!!:!! !!:! !!! !|||! ValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnA 237319 : GTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACG : 237378 196 : luIleIleLeuPheMetGlnPheLeuThrGlyPheIleValSerSerSerThrLeuGl : 214 !:|||:!!:!!!!. |||||||||:!!|||||||||!.!!:!!:!|||.!!:!!.! spIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSe 237379 : ACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAG : 237435 215 : yIleLeuSerIleThrValValLeuIleAlaHisAlaCysGlyGlnLeuAsnValVal : 233 !:!!:!!|||:!!||| !!.!|||! !:!!||||||! !|||||||||!:!|||||| rValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValVal 237436 : TGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTT : 237492 234 : MetThrTrpIleThrGluPheValAsnGluSerArgLysGlu<->LysIleAlaProP : 252 ||| !! !||| !!!:||||||!:!|||:!!|||:::..! ||| !! !! !| MetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAspHisP 237493 : ATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATCATT : 237552 253 : heGluAsnIleGlyIleIleValGluArgHisLeuArgThrLeuSerPheValSerSe : 271 ||!!:.!.||| !! !|||||||||..!|||||||||..!|||!.!! |||!!!! heAspGluIleProThrIleValGluGluHisLeuArgValLeuLys***ValCysLe 237553 : TCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAGTATGTTT : 237609 272 : rIleGlu : 273 !:!:!!: uLeuAsp 237610 : GTTGGAT : 237617 vulgar: gi|350422503|ref|XP_003493183.1| 1 273 . KQ414889.1 236804 237617 + 599 M 35 105 G 2 0 M 209 627 G 0 3 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236805 237617 599 + . gene_id 7 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236805 237617 . + . KQ414889.1 exonerate:protein2genome:local exon 236805 237617 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236805 237617 599 + . alignment_id 7 ; Query gi|350422503|ref|XP_003493183.1| ; Align 236805 2 105 ; Align 236910 39 627 ; Align 237540 248 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 507 Query range: 17 -> 405 Target range: 278576 -> 280551 18 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerPheP : 37 ||||||:!!|||:!!|||||||||||||||||||||||||||!.!|||||| ! !! TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 38 : roSerThrSerArgLeuGluArgIleMetSerPheValLeuIleValIleCysTyrIl : 56 !!!!..!!!!! !||||||!:!|||! ||| ! |||||| :!!||| !!! !.! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 57 : eIleLeuIleCysThrIleIleProCysLeuLeuHisIleIleLeuGluAsnGlu<-> : 75 !:!::!! !! ! !:!::!!|||||| !||| !! !:!:|||!!:!!. eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 76 : SerPheArgIleLysLeuArgLeuIleGlyProValSerTyrLeuCysValGlySerI : 94 ..!.!! !! |||:!!!:!:!!|||||||||:!!|||!:!! ! :!!!.!!!!| AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 95 : leAsnTyrThrThrLeuLeuLeuArgGlyLysAspIleArgTyrCysValGluHisMe : 113 ||!!.||| !! !|||:!!! !|||||| ! ||| !! ! ||||||.!. !!!! leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 114 : tGlnThrAspTrpArg<-><-><->ThrValLysArgGluLysAspGlnGlnValMet : 129 :!::||||||||| ! :!! !::::::|||:::::::::::::::||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 130 : LeuLysSerAlaLysPheGlyArgTyrValThrAlaSerThrAlaAlaPheMet<->G : 148 ! ! ||||||!:!.!!||||||! !:!!.!! !! !!:!|||!.!|||||| . ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 149 : lnGlyGlyValPheCysTyrCysPheMetThrAlaLeuSerThrGluValIleGlnVa : 167 ..||||||||||||! ! !..! ! ||| !! !!!!:!!..!.....! :! erGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIl 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCAT : 279039 168 : lGlyAsnGluThrArgIleValHisGlnLeuProTyrValIleTyrLysGluLeuIle : 186 !! !||||||||| |||......! ! !!!:! !||||||:::! |||:!! eAspAsnGluThr------ValArgSerGlnAlaPheProIleTyrArgGlyLeuLeu 279040 : CGACAATGAAACG------GTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTC : 279090 187 : AspIleAsnGluSerProThrAsnGluIleIleLeuPheMetGlnPheLeuThrGlyP : 206 ||| ..! ||||||:!! !||||||:!:! !|||||||||! !|||.!!!.!| AspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaP 279091 : GATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGT : 279150 207 : heIleValSerSerSerThrLeuGlyIleLeuSerIleThrValValLeuIleAlaHi : 225 ||:!!:!!! !||| !|||:!!||| !! !|||:!:! !!.!|||!!!:!! !|| heValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHi 279151 : TCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCA : 279207 226 : sAlaCysGlyGlnLeuAsnValValMetThrTrpIleThrGluPheValAsn<-><-> : 243 |!.!|||||||||!!!!..:!!:!!:!!||| !:!: !:!!.!!:!!:!! sValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyVal 279208 : CGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTG : 279264 244 : GluSerArgLysGluLysIleAlaProPheGluAsnIleGlyIleIleValGluArgH : 262 :!!.!!||||||... !! !.!!! ! :!!...:!:||| !|||:!!|||!.!| LysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisH 279265 : AAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATC : 279324 263 : isLeuArgThrLeu{Se} >>>> Target Intron 1 >>>> {r}PheValSe : 270 |||||!:!! !|||{.!} 657 bp {!}!!. !!!! isLeuLysIleLeu{Gl}++ +-{y}LeuPheTh 279325 : ATCTGAAGATACTG{GG}gt.........................at{A}TTATTTAC : 280005 271 : rSerIleGluGluThrValAsnArgIlePhePheLeuGluValLeuArgSerThrLeu : 289 ! ! !.!...! !! ! !! !||| !:!!! !:!! !!:!! !.!!!!! rHisGlyAsnArgAspAspLeuCysTyrPheHisIleValMetAlaLysIleAlaPhe 280006 : TCACGGTAACAGAGACGACTTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTC : 280062 290 : HisMetCysMetLeuSerTyrTyrIleValThrGluTrpSerAspSerAspIleGlnI : 309 !|||! ! !|||||| !!:! ! ! !||| !:!|||:!! ||| !! ValMetTyrSerLeuSerValPhe***GluTrpGluGlnAsnAspAla---IleGlyT 280063 : GTCATGTACTCGTTGTCAGTTTTCTAGGAATGGGAGCAAAATGACGCT---ATAGGAA : 280119 310 : leLeuThrThrTyrSerMetLeuLeuAlaSerIleCysPheAsnIlePheValIleCy : 328 !!!||| !! ! !.!.|||:!!:!! :!! ||||||:!!|||:!!:!!|| hrPheThrTyrLeuMetPheLeuIleSer---LeuThrPheAsnValPheIleLeuCy 280120 : CGTTCACGTATTTAATGTTTCTCATATCT---TTAACGTTCAACGTTTTCATACTCTG : 280173 329 : sTyrIleGlyGluThrLeuThrGluGln >>>> Target Intron 2 >>>> S : 338 |||||||||||||! !|||:!!|||||| 74 bp ! sTyrIleGlyGluIleLeuSerGluGln++ ++C 280174 : TTACATCGGTGAAATTCTCTCCGAACaggt.........................agT : 280277 339 : erArgLysValGlyAspValValTyrMetAlaAsnTrpTyrTyrLeuThrGluLysAr : 357 !! !|||||||||! !..!|||||| !:!!|||||| !||| !!! !|||!: ysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLy 280278 : GCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAA : 280334 358 : gIleLeuGluLeuIleLeuIleIleMetArgSerSerValValValGluIleThrAla : 376 ! !! !! ||||||||||||.!! !|||!:! ! !:!!:!!:!!|||||| sAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAla 280335 : AGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCT : 280391 377 : GlyLysIleIleHisMetSerIleGlnThrPheSerThr >>>> Target Intro : 390 |||||||||||| !!:!:|||:!!...!:!|||!!!!:! 71 bp GlyLysIleIleAspLeuSerLeuSerSerPheCysSer++ 280392 : GGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt................. : 280435 391 : n 3 >>>> ValIleLysThrAlaPheThrTyrLeuAsnLeuLeuArgGlnValThr : 405 |||:!!||||||||||||.!!||||||!:!||||||||| !:!!||| ++ValLeuLysThrAlaPheAlaTyrLeuSerLeuLeuArgThrLeuThr 280436 : ........agGTGTTAAAAACGGCATTCGCATATCTGAGCTTATTACGTACGCTTACC : 280549 vulgar: gi|350422503|ref|XP_003493183.1| 17 405 . KQ414889.1 278576 280551 + 507 M 57 171 G 0 3 M 44 132 G 0 9 M 29 87 G 0 3 M 24 72 G 2 0 M 69 207 G 0 6 M 24 72 S 0 2 5 0 2 I 0 653 3 0 2 S 1 1 M 38 114 G 1 0 M 12 36 G 1 0 M 18 54 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 280551 507 + . gene_id 8 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278577 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279340 . + . insertions 21 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279997 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279996 279997 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 279998 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 279998 280202 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280551 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278577 280551 507 + . alignment_id 8 ; Query gi|350422503|ref|XP_003493183.1| ; Align 278577 18 171 ; Align 278751 75 132 ; Align 278892 119 87 ; Align 278982 148 72 ; Align 279054 174 207 ; Align 279267 243 72 ; Align 279999 268 114 ; Align 280113 307 36 ; Align 280149 320 54 ; Align 280277 338 156 ; Align 280504 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 499 Query range: 17 -> 400 Target range: 284523 -> 287252 18 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerPheP : 37 ||||||:!!|||:!!|||||||||||||||||||||||||||!.!|||||| ! !! TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 38 : roSerThrSerArgLeuGluArgIleMetSerPheValLeuIleValIleCysTyrIl : 56 !!!!..!!!!! !||||||!:!|||! ||| ! |||||| :!!||| !!! !.! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 57 : eIleLeuIleCysThrIleIleProCysLeuLeuHisIleIleLeuGluAsnGlu<-> : 75 !:!::!! !! ! !:!::!!|||||| !||| !! !:!:|||!!:!!. eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 76 : SerPheArgIleLysLeuArgLeuIleGlyProValSerTyrLeuCysValGlySerI : 94 ..!.!! !! |||:!!!:!:!!|||||||||:!!|||!:!! ! :!!!.!:!!| AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 95 : leAsnTyrThrThrLeuLeuLeuArgGlyLysAspIleArgTyrCysValGluHisMe : 113 ||!!.||| !! !|||:!!! !|||||| ! ||| !! ! ||||||:!! !!!! leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 114 : tGlnThrAspTrpArgThrVal<-><-><->LysArgGluLysAspGlnGlnValMet : 129 :!::.!!|||||| ! !..! !..:::|||:::::::::::::::||| eArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMet 284813 : TCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTG : 284869 130 : LeuLysSerAlaLysPheGlyArgTyrValThrAlaSerThrAlaAlaPheMetGlnG : 149 ! ! ||||||!:!.!!||||||! !:!!.!! !! ! !|||!.!|||||| ! . ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrS 284870 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATT : 284929 150 : lyGlyValPheCysTyrCysPheMetThrAlaLeuSerThrGluValIleGlnValGl : 168 .!|||! !|||! !||| ! :!!! ! !!|||!!!|||! ! !! :!!:!! erGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIle-- 284930 : CCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATC-- : 284986 169 : yAsnGluThrArgIleValHisGlnLeuProTyrValIleTyrLysGluLeuIleAsp : 187 ! !!!:!.!..!! !|||......! ! !!!:! !||||||:::! |||:!!||| -IleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAsp 284987 : -ATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGAT : 285040 188 : IleAsnGluSerProThrAsnGluIleIleLeuPheMetGlnPheLeuThrGlyPheI : 207 ..! ||||||:!! !||||||:!:! !|||||||||! !|||.!!!.!|||: ProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheV 285041 : CCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCG : 285100 208 : leValSerSerSerThrLeuGlyIleLeuSerIleThrValValLeuIleAlaHisAl : 226 !!:!!! !||| !|||:!!||| !! !|||:!:.!!!.!|||!!!:!! !|||!. alIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisVa 285101 : TTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGT : 285157 227 : aCysGlyGlnLeuAsnValValMetThrTrpIleThrGluPheValAsn<-><->Glu : 243 !|||||||||!!!!..:!!:!!:!!||| !:!: !:!!.!!|||:!! :!! lCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLys 285158 : CTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAA : 285214 244 : SerArgLysGluLysIleAlaProPheGluAsnIleGlyIleIleValGluArgHisL : 263 .!!||||||! ! !! !.!!! ! :!!...:!:||| !|||:!!|||!.!|||| GlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisL 285215 : GGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATC : 285274 264 : euArgThrLeu{Se} >>>> Target Intron 1 >>>> {r}PheValSerSe : 271 ||!:!! !|||{.!} 1494 bp {!}.!.:!!! !!! euLysIleLeu{Gl}++ -+{y}IleLeuPheTh 285275 : TGAAGATACTG{GG}gt.........................gg{G}ATATTATTTAC : 286792 272 : rIleGluGluThrValAsnArgIlePhePheLeuGluValLeuArgSerThrLeuHis : 290 ! !!:! !.! !:!! !:!:! !!:!! !.!...!:!!! !:!!! !:!! r---AspGlyAsnArgAspAspLeuCysTyrTyrHisThrValMetAlaIleIleAla 286793 : T---GACGGTAACAGAGACGACTTGTGTTATTACCATACTGTAATGGCAATAATTGCA : 286846 291 : MetCysMetLeuSerTyrTyrIleValThrGluTrpSerAspSerAspIleGlnIleL : 310 .!. !|||! !|||! ! :!! !! !||||||..!.!.|||!!:! ! ! ! PheValMetTyrSerLeuSerValPhe***GluTrpGluGlnSerGluThrIleGlyT 286847 : TTCGTCATGTACTCGTTGTCAGTTTTCTAGGAATGGGAGCAAAGTGAAACTATAGGAA : 286906 311 : euThrThrTyrSerMetLeuLeuAlaSerIleCysPheAsnIlePheValIleCysTy : 329 !! !||||||!!!! !||||||!.!|||.!! ||||||:!!|||:!!:!!||||| hrIleThrTyrCysThrLeuLeuValSerPheThrPheAsnValPheIleLeuCysTy 286907 : CGATCACGTATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTA : 286963 330 : rIleGlyGluThrLeuThrGluGln >>>> Target Intron 2 >>>> SerA : 339 ||||||||||! !|||:!!|||||| 74 bp !! rIleGlyGluIleLeuSerGluGln++ ++CysL 286964 : CATCGGTGAAATTCTCTCCGAACaggt.........................agtGCT : 287067 340 : rgLysValGlyAspValValTyrMetAlaAsnTrpTyrTyrLeuThrGluLysArgIl : 358 !||||||||| !..!|||||| !:!!|||||| !||| !!! !|||! ! euLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAl 287068 : TAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGC : 287124 359 : eLeuGluLeuIleLeuIleIleMetArgSerSerValValValGluIleThrAlaGly : 377 !! !! ||||||||||||.!! !|||!:! ! !:!!:!!:!!||||||||| aGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGly 287125 : TCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGA : 287181 378 : LysIleIleHisMetSerIleGlnThrPheSerThrValIleLysThrAlaPheThrT : 397 ||||||||| !!:!:|||:!!...!:!|||!!!!:!|||! !! ! ! !!!.:!!| LysIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerT 287182 : AAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCT : 287241 398 : yrLeuAsnLeu : 400 ||! !:!!||| yrTyrHisLeu 287242 : ATTATCATTTG : 287252 vulgar: gi|350422503|ref|XP_003493183.1| 17 400 . KQ414889.1 284523 287252 + 499 M 57 171 G 0 3 M 46 138 G 0 9 M 47 141 G 1 0 M 74 222 G 0 6 M 24 72 S 0 2 5 0 2 I 0 1490 3 0 2 S 1 1 M 4 12 G 1 0 M 65 195 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 287252 499 + . gene_id 9 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284524 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 285287 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286780 286781 . + . intron_id 0 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 286782 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286782 286989 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284524 287252 499 + . alignment_id 9 ; Query gi|350422503|ref|XP_003493183.1| ; Align 284524 18 171 ; Align 284698 75 138 ; Align 284845 121 141 ; Align 284986 169 222 ; Align 285214 243 72 ; Align 286783 268 12 ; Align 286795 273 195 ; Align 287064 338 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 496 Query range: 10 -> 337 Target range: 217153 -> 219439 11 : AspPheAspGlyArgSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI : 30 !!::::::: ... ::: |||:!!|||! !|||||||||!!.|||||||||! GluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProM 217154 : GAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGA : 217211 31 : leGlyAlaTrpProSerPheProSerThrSerArgLeuGluArgIleMetSerPheVa : 49 !:||| !||||||!:!! ! !!!!|||!!!|||! !..!!:!|||:!:! ! :! etGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLe 217212 : TGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACT : 217268 50 : lLeuIleValIleCysTyrIleIleLeuIleCysThrIleIleProCysLeuLeuHis : 68 !:!!! !!.!:!!|||||| !:!::!!! !! ! !.!!:!!||||||! !:!!:!! uIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyr 217269 : GATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTAC : 217325 69 : IleIleLeuGluAsnGluSerPheArgIleLysLeuArgLeuIleGlyProValSerT : 88 :!:.!!|||||| !|||..!.!! ! !||||||!:!|||.!!||||||:!!! !! ValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIleP 217326 : GTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCT : 217385 89 : yrLeuCysValGlySerIleAsnTyrThrThrLeuLeuLeuArgGlyLysAspIleAr : 107 :!! ! :!!!.!! !:!!!!.||| !:!!|||:!!:!!!.! ! !|||||||| heCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleAr 217386 : TCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCG : 217442 108 : gTyrCysValGluHisMetGlnThrAspTrpArgThrValLysArgGluLysAspGln : 126 | ! ||||||..!...!!::!! !|||||||||!.!|||!:! !!|||||||||::! gGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArg 217443 : CGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGG : 217499 127 : GlnValMetLeuLysSerAlaLysPheGlyArgTyrValThrAlaSerThrAlaAlaP : 146 :!!!.!|||:!! !!:!|||!!.||||||||| ! :!!..! ! ! !.!! !| GluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPheP 217500 : GAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCT : 217559 147 : heMetGlnGlyGlyValPheCysTyrCysPheMetThrAlaLeuSerThrGluValIl : 165 ||||| ! .!!||| ||| ..! ! ! !!:!!|||..!! ! !|| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIl 217560 : TCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAAT : 217616 166 : eGlnValGlyAsnGluThrArgIleValHisGlnLeuProTyrValIleTyrLysGlu : 184 |! ! !! !|||! !!.!! !! ! !! !! !||| !!:! !.!! ||| ! eLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyr 217617 : TCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTAT : 217673 185 : LeuIleAspIleAsnGluSerProThrAsnGluIleIleLeuPheMetGlnPheLeuT : 204 :!!||||||! !..! ! !!!|||||||||||||||:!:!!!|||:!:|||!!.:!!. IleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleA 217674 : ATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCG : 217733 205 : hrGlyPheIleValSerSerSerThrLeuGlyIleLeuSerIleThrValValLeuIl : 223 !!||| !:!::!! !.!!! !|||! !!.! !! !|||:!:.!!!.!!.!!!! laGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAl 217734 : CTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGC : 217790 224 : eAlaHisAlaCysGlyGlnLeuAsnValValMetThrTrpIleThrGluPheValAsn : 242 !.!|||||||||||||||:!!.!.|||:!!|||!.!|||:!: !.!.!!.:!!:!! aValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAsp 217791 : GGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGAC : 217847 243 : GluSerArgLysGluLysIleAlaProPheGluAsnIleGlyIleIleValGluArgH : 262 ! !!! ! ! !!.. !.!! ! !! !..|||!.!! !||||||...!:!| GlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnH 217848 : GGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAAC : 217907 263 : isLeuArgThrLeuSerPheValSerSerIleGluGluThrValAsnArgIlePhePh : 281 ||:!!|||! !|||!.!! !|||!!!! !|||! ! ! !:::! ! !|||!: isValArgIleLeuLysCysValArg***IleValGlyGluCysSerLeuCysPheTr 217908 : ACGTTCGGATATTAAAGTGTGTAAGATAGATCGTTGGTGAATGCTCGCTTTGTTTTTG : 217964 282 : eLeuGluValLeu{Ar} >>>> Target Intron 1 >>>> {g}SerThrLeu : 289 :!!!:!!! !:!!{!:} 1305 bp {!}... ::: pPheGlnGlyMet{Ly}-+ ++{s}LysTyrIle 217965 : GTTTCAGGGGATG{AA}tt.........................ag{a}aaatatatt : 219293 290 : HisMetCysMetLeuSerTyrTyrIleValThrGluTrpSerAspSerAspIleGlnI : 309 :::::: ::: ...::: !||||||!.!...!:!|||:!! !! TyrValAsnLeuTyrLysPheGluTyrGln***GluTrpLysSerAsnAspValThrS 219294 : tacgttaatttgtataaatttgaatatcaatAGGAATGGAAATCGAATGATGTAACGA : 219353 310 : leLeuThrThrTyrSerMetLeuLeuAlaSerIleCysPheAsnIlePheValIleCy : 328 ! !..!||||||! !!!:|||||| !|||:!: ||||||||||||:::...|| erAlaValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCy 219354 : GTGCAGTGACATACATCATTCTACTTATATCCCTcactttcaacattttcatattttg : 219410 329 : sTyrIleGlyGluThrLeuThrGluGln : 337 |||||||||||||! !:!!.!!|||||| sTyrIleGlyGluIleValAlaGluGln 219411 : ctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: gi|350422503|ref|XP_003493183.1| 10 337 . KQ414889.1 217153 219439 + 496 M 275 825 S 0 2 5 0 2 I 0 1301 3 0 2 S 1 1 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217154 219439 496 + . gene_id 10 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217154 217980 . + . KQ414889.1 exonerate:protein2genome:local exon 217154 217980 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217981 217982 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 217981 219285 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219284 219285 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219286 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219286 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217154 219439 496 + . alignment_id 10 ; Query gi|350422503|ref|XP_003493183.1| ; Align 217154 11 825 ; Align 219287 287 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 430 Query range: 266 -> 403 Target range: 263671 -> 265004 267 : SerPheValSerSerIleGluGluThrValAsnArgIlePhePheLeuGluValLeuA : 286 ||||||:!!..! !!|||:!!.!...!:!!!:!! !|||! !|||:!!|||:!!!!!! SerPheIleAspArgIleLysAsnValMetSerThrIleCysPheValGluLeuPheL 263672 : AGTTTCATAGATCGTATTAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCA : 263729 287 : rgSerThrLeuHisMetCysMetLeuSerTyrTyrIleValThr >>>> Target : 301 :!:!!|||||| !!!!:|||||||||.!!|||||||||:!!||| 76 ysAlaThrLeuAspIleCysMetLeuGlyTyrTyrIleLeuThr++ 263730 : AGGCTACGCTGGATATATGCATGCTAGGTTACTACATACTTACGgt............ : 263776 302 : Intron 1 >>>> GluTrpSerAspSerAspIleGlnIleLeuThrThrTyrSerM : 315 4 bp ||||||..!..! ||||||||| ||||||||||||! !| ++GluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheM 263777 : .............agGAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCA : 264580 316 : etLeuLeuAlaSerIleCysPheAsnIlePheValIleCysTyrIleGlyGluThrLe : 334 ||:!!||| !|||!!:||| !|||||||||:!!!!:|||||||||||||||! !|| etIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLe 264581 : TGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATT : 264637 335 : uThrGluGln >>>> Target Intron 2 >>>> SerArgLysValGlyAspV : 344 |||||||||| 78 bp !!!!:!|||||||||!!:| uThrGluGln++ ++CysLysLysValGlyGluV 264638 : GACTGAGcaggt.........................agTGTAAGAAAGTTGGTGAGG : 264745 345 : alValTyrMetAlaAsnTrpTyrTyrLeuThrGluLysArgIleLeuGluLeuIleLe : 363 |||||||||||:!!||||||||||||||| !! ! ||| !||||||!!:|||||||| alValTyrMetSerAsnTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLe 264746 : TGGTTTACATGTCGAATTGGTATTACTTACCCTACAAAGATATCCTTGATCTGATTCT : 264802 364 : uIleIleMetArgSerSerValValValGluIleThrAlaGlyLysIleIleHisMet : 382 |||||||:!:||||||||||||||| !!:!!.!!|||||||||||||||:!!|||||| uIleIleLeuArgSerSerValValPheLysPheThrAlaGlyLysIleLeuHisMet 264803 : CATCATTTTAAGATCCAGCGTGGTGTTTAAATTCACCGCTGGAAAGATACTTCACATG : 264859 383 : SerIleGlnThrPheSerThr >>>> Target Intron 3 >>>> ValIleLy : 392 |||!!: ! ||||||||| ! 80 bp |||||||| SerMetTyrThrPheSerAsp++ ++ValIleLy 264860 : TCCATGTACACATTCAGTGACgt.........................aggTAATCAA : 264969 393 : sThrAlaPheThrTyrLeuAsnLeuLeuArgGln : 403 |:!!:!!||||||||||||||||||||||||||| sSerSerPheThrTyrLeuAsnLeuLeuArgGln 264970 : ATCCTCTTTCACGTACTTAAACTTACTTCGCCAA : 265004 vulgar: gi|350422503|ref|XP_003493183.1| 266 403 . KQ414889.1 263671 265004 + 430 M 34 102 5 0 2 I 0 760 3 0 2 M 37 111 5 0 2 I 0 74 3 0 2 M 52 156 5 0 2 I 0 76 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 263672 265004 430 + . gene_id 11 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 263672 263773 . + . KQ414889.1 exonerate:protein2genome:local exon 263672 263773 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263774 263775 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263774 264537 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264536 264537 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264538 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264726 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265004 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265004 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 263672 265004 430 + . alignment_id 11 ; Query gi|350422503|ref|XP_003493183.1| ; Align 263672 267 102 ; Align 264538 301 111 ; Align 264727 338 156 ; Align 264963 390 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 419 Query range: 3 -> 272 Target range: 221336 -> 222143 4 : LysThrValAlaIleLysIleAspPheAspGlyArgSerAspTyrSerLeuGlnLeuA : 23 ...:!!..! !:!!:!! !|||!:! ! !!.! ! ! ! |||:!!||||||! SerSerThrArgValGluTyrAspTyrLysThrAsnValLysLeuSerValGlnLeuS 221337 : TCTTCGACTCGTGTTGAATACGATTACAAGACGAACGTGAAATTGAGCGTGCAATTGA : 221394 24 : snArgTrpPheLeuLysProIleGlyAlaTrpProSerPheProSerThrSerArgLe : 42 :!||||||.!!|||||||||||||||!.!||||||!:!! !!!:!! !|||! !:! erArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaAsnIleSerThrVa 221395 : GCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGT : 221451 43 : uGluArgIleMetSerPheValLeuIleValIleCysTyrIleIleLeuIleCysThr : 61 !|||||| !:!:! !!:::!!:!!! !|||:!!||||||! !:!::!!! ! ! ! lGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLeuIleThrPheLeu 221452 : AGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTC : 221508 62 : IleIleProCysLeuLeuHisIleIleLeuGluAsnGluSerPheArgIleLysLeuA : 81 :!::!!|||||| !|||:!!:!:||||||||| |||..! !! !! !!:!:!!! LeuValProCysSerLeuTyrValIleLeuGluValGluAspValTyrAsnArgIleL 221509 : TTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCA : 221568 82 : rgLeuIleGlyProValSerTyrLeuCysValGlySerIleAsnTyrThrThrLeuLe : 100 :!|||:!:||||||:!!|||!:!! ! :!!!.!! !:!!!!.||| ! !|||:! ysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIl 221569 : AATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGAT : 221625 101 : uLeuArgGlyLysAspIleArgTyrCysValGluHisMetGlnThrAspTrpArgThr : 119 !||| !! !!!.||||||||| ! |||:!!|||!.!!!::!! !||||||!:!!.! eLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTrpAspTrpLysAsn 221626 : ACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAAT : 221682 120 : ValLysArgGluLysAspGlnGlnValMetLeuLysSerAlaLysPheGlyArgTyrV : 139 :!!! !...||||||:!!.!.:!!|||:!!:!!!:!|||! ||||||||| : IleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgL 221683 : ATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGAT : 221742 140 : alThrAlaSerThrAlaAlaPheMetGlnGlyGlyValPheCysTyrCysPheMetTh : 158 !!! ! !! ! !.!! !|||||| ! .!!||| ||| ... ! euIleMetIleCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIl 221743 : TGATCATGATCTGCACATTTTTCATGTACAGTggtttcgttttttattacatAGCCAT : 221799 159 : rAlaLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleValHisGlnLeu : 177 ! !!!!!|||..!! !|||! !.! !:!! ... ! !:!! eProPheSerValGlyLysIleProAlaGlnAspValAsnValThrPheIleProMet 221800 : ACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATG : 221856 178 : ProTyrValIleTyrLysGluLeuIleAspIleAsnGluSerProThrAsnGluIleI : 197 !!:! !.!!! !:! :!!:!!|||! !... ! ||||||..!|||||||||: ValPheProPheSerArgPheIleValAspThrArgTyrSerProValAsnGluIleL 221857 : GTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTC : 221916 198 : leLeuPheMetGlnPheLeuThrGlyPheIleValSerSerSerThrLeuGlyIleLe : 216 !:!!!! :!:|||.!!:!!.!!||| !:!::!! !|||! !|||! !!.! !! euPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCy 221917 : TGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTG : 221973 217 : uSerIleThrValValLeuIleAlaHisAlaCysGlyGlnLeuAsnValValMetThr : 235 !|||:!:..!!.!:!!!!! !!.!|||||||||||||||:!!.!.|||:!!|||!:! sSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSer 221974 : CAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGC : 222030 236 : TrpIleThrGluPheValAsnGluSerArgLysGluLysIleAlaProPheGluAsnI : 255 |||:!:! !.!.!!.:!!|||! !! ! ! ! ! ! ! ! !..!!..| TrpLeuLysHisLeuIleAsnGlyArgAlaAspMetCysAsnAsnValAspArgArgI 222031 : TGGCTGAAACATTTGATCAACGGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAA : 222090 256 : leGlyIleIleValGluArgHisLeuArgThrLeuSerPheValSerSerIle : 272 ||!.!! ||||||.!.!:!|||:!!|||! !|||..!!:!||| !!!!!||| leAlaLysIleValAsnGlnHisValArgIleLeuGlnTyrValArgCysIle 222091 : TAGCGAAGATTGTGAATCAACACGTTCGAATATTGCAGTATGTACGTTGTATC : 222143 vulgar: gi|350422503|ref|XP_003493183.1| 3 272 . KQ414889.1 221336 222143 + 419 M 269 807 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221337 222143 419 + . gene_id 12 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221337 222143 . + . KQ414889.1 exonerate:protein2genome:local exon 221337 222143 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221337 222143 419 + . alignment_id 12 ; Query gi|350422503|ref|XP_003493183.1| ; Align 221337 4 807 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 399 Query range: 11 -> 269 Target range: 212854 -> 213628 12 : PheAspGlyArgSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleG : 31 !:!!!: !||| ::: |||::: !! !|||||||||.!!|||||||||! | TyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrG 212855 : TACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGG : 212912 32 : lyAlaTrpProSerPheProSerThrSerArgLeuGluArgIleMetSerPheValLe : 50 || !||||||..! !!! !..!|||! !:!!|||!:!! !!!::!! :!!:! lyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIleAlaArgLeuVa 212913 : GTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGT : 212969 51 : uIleValIleCysTyrIleIleLeuIleCysThrIleIleProCysLeuLeuHisIle : 69 !! !..!:!!|||||| !:!::!! !! ! !:!!||||||||| !|||:!!:!: lAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrVal 212970 : CAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTG : 213026 70 : IleLeuGluAsnGluSerPheArgIleLysLeuArgLeuIleGlyProValSerTyrL : 89 .!!|||!!: |||:::... ::::!!..!|||.!!||| ! !!:!!!:!! PheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheC 213027 : TTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTT : 213086 90 : euCysValGlySerIleAsnTyrThrThrLeuLeuLeuArgGlyLysAspIleArgTy : 108 ! !.!!.! ! !!.||| !:!!|||:!!|||!.!||| ! ||||||||| ysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgTh 213087 : GCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTAC : 213143 109 : rCysValGluHisMetGlnThrAspTrpArgThrValLysArgGluLysAspGlnGln : 127 |||||||||||||||:!! !||||||!:!!.!:!!! !!.!|||:!!|||:!!:!! rCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGlu 213144 : GTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAA : 213200 128 : ValMetLeuLysSerAlaLysPheGlyArgTyrValThrAlaSerThrAlaAlaPheM : 147 :!!||| ! !!:!|||!..||||||!:! :!!..!.!!! ! !||| !|||| IleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPhePheM 213201 : ATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCA : 213260 148 : etGlnGlyGlyValPheCysTyrCysPheMetThrAlaLeuSerThrGluValIleGl : 166 || ! !||| !! ! !|||! !.!!:!:..! !!:!!|||.!!!!: !!!: etTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLysMetVa 213261 : TGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGT : 213317 167 : nValGlyAsnGluThrArgIleValHisGlnLeuProTyrValIleTyrLysGluLeu : 185 !!.!! !:!! !.! !! ! !!...|||:!! ! ! !:!!! !:! :!! lAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSerArgPheIle 213318 : AGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATC : 213374 186 : IleAspIleAsnGluSerProThrAsnGluIleIleLeuPheMetGlnPheLeuThrG : 205 :!!|||:!!... ! ||||||..!|||||||||.!!!!!!!.!!:|||.!!:!!.!!| ValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleIleAlaG 213375 : GTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTG : 213434 206 : lyPheIleValSerSerSerThrLeuGlyIleLeuSerIleThrValValLeuIleAl : 224 || ! :!::!! !:!!! !.!!:!!! ! !! !|||:!:.!!!.!|||!!! !. lyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPheAlaVa 213435 : GAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGT : 213491 225 : aHisAlaCysGlyGlnLeuAsnValValMetThrTrpIleThrGluPheValAsnGlu : 243 !|||||||||||||||:!!..!:!!:!!|||!:!|||:!: !.!.!!.:!!:!!! lHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGly 213492 : TCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGT : 213548 244 : SerArgLysGluLysIleAlaProPheGluAsnIleGlyIleIleValGluArgHisL : 263 !!!..! ! !!..! ! ! !!!:!..|||!.!:!!||||||.!.!:!|||: ArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleValAsnGlnHisV 213549 : AGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATG : 213608 264 : euArgThrLeuSerPheVal : 269 !!|||! !|||!.!!::||| alArgIleLeuLysTrpVal 213609 : TGCGGATACTGAAGTGGGTG : 213628 vulgar: gi|350422503|ref|XP_003493183.1| 11 269 . KQ414889.1 212854 213628 + 399 M 258 774 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212855 213628 399 + . gene_id 13 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212855 213628 . + . KQ414889.1 exonerate:protein2genome:local exon 212855 213628 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212855 213628 399 + . alignment_id 13 ; Query gi|350422503|ref|XP_003493183.1| ; Align 212855 12 774 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 398 Query range: 1 -> 266 Target range: 208164 -> 208959 2 : ThrAsnLysThrValAlaIleLysIleAspPheAspGlyArgSerAspTyrSerLeuG : 21 |||! !:! !:!! !:!!!!.! !:!!!:! ! ..! ! !..!!:!!:!:!!! ThrMetArgGlnIlePheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValA 208165 : ACGATGAGACAAATATTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTC : 208222 22 : lnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerPheProSerThrSe : 40 ::|||||| !||| |||||| !||||||:!!||||||!!!! ! !..! !|| rgLeuAsnValTrpThrLeuLysIleIleGlySerTrpProArgSerIleAspArgSe 208223 : GTCTGAACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTC : 208279 41 : rArgLeuGluArgIleMetSerPheValLeuIleValIleCysTyrIleIleLeuIle : 59 | !!||||||!.!! !..! !.!!:!!|||! !|||:!! !!:!! !:!:||| ! rTrpLeuGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGly 208280 : CTGGTTAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGT : 208336 60 : CysThrIleIleProCysLeuLeuHisIleIleLeuGluAsnGluSerPheArgIleL : 79 ! !! !:!:|||||| ! !:!! ! ||||||! ! !|||..!||| ! !: PheIleValIleProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspG 208337 : TTCATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACC : 208396 80 : ysLeuArgLeuIleGlyProValSerTyrLeuCysValGlySerIleAsnTyrThrTh : 98 !!|||!:!:!! !.!! !!:!!|||!:!!!! :!!!.!! !! !!.|||..!! lnLeuLysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIl 208397 : AATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGAT : 208453 99 : rLeuLeuLeuArgGlyLysAspIleArgTyrCysValGluHisMetGlnThrAspTrp : 117 !:!! !:!!|||! ! ||||||||| ! |||||||||:!!:!::!!.!!|||||| eMetThrValArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrp 208454 : CATGACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGG : 208510 118 : ArgThrValLysArgGluLysAspGlnGlnValMetLeuLysSerAlaLysPheGlyA : 137 |||!.!|||:!!!.!|||:!!|||::!:!!:!!|||||| ! !:!|||!..|||!.!| ArgAsnValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaA 208511 : AGAAACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCA : 208570 138 : rgTyrValThrAlaSerThrAlaAlaPheMetGlnGlyGlyValPheCysTyrCysPh : 156 || ! :!!! !!.!! ! !!.!||||||||| ! |||||||||... ||| .! rgLysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIl 208571 : GGAAACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaT : 208627 157 : eMetThrAlaLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleValHis : 175 ! ! !!|||!!! !!!: !:!! ! !! !..!! !.! !! !... eAlaLeuProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArg 208628 : CGCTTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGA : 208684 176 : GlnLeuProTyrValIleTyrLysGluLeuIleAspIleAsnGluSerProThrAsnG : 195 ::!||| !||| !:!! !||| :!!:!:|||:!!... ! ||||||..!|||| ArgLeuValTyrProValProLysPheIleLeuAspValArgTyrSerProValAsnG 208685 : AGGCTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATG : 208744 196 : luIleIleLeuPheMetGlnPheLeuThrGlyPheIleValSerSerSerThrLeuGl : 214 |||||.!!! ! :!:|||!!.|||:!!||||||:!!!.! !!:!! !|||:!!|| luIlePheTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGl 208745 : AGATTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGG : 208801 215 : yIleLeuSerIleThrValValLeuIleAlaHisAlaCysGlyGlnLeuAsnValVal : 233 | !! !.!!:!:.!!!.!:!!||| !||||||||||||||||||.!.:!!:!! yAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeu 208802 : GGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTG : 208858 234 : MetThrTrpIleThrGluPheValAsnGluSerArgLysGluLysIleAlaProPheG : 253 |||:!!|||!!: !:!!!!.|||:!!! ! !!..! ! |||:!!! ! ! !: MetSerTrpMetGluLysLeuValAspGlyArgGluAspGluGluLysAsnLeuAspG 208859 : ATGTCCTGGATGGAGAAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATC : 208918 254 : luAsnIleGlyIleIleValGluArgHisLeuArgThrLeu : 266 !!!..:!:!.!! !|||||||||!:!|||:!!|||..!:!! lnArgLeuAlaAsnIleValGluGlnHisValArgValIle 208919 : AGAGGTTGGCTAATATCGTGGAGCAGCATGTTCGAGTGATC : 208959 vulgar: gi|350422503|ref|XP_003493183.1| 1 266 . KQ414889.1 208164 208959 + 398 M 265 795 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208165 208959 398 + . gene_id 14 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208165 208959 . + . KQ414889.1 exonerate:protein2genome:local exon 208165 208959 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208165 208959 398 + . alignment_id 14 ; Query gi|350422503|ref|XP_003493183.1| ; Align 208165 2 795 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 381 Query range: 4 -> 272 Target range: 226891 -> 227695 5 : ThrValAlaIleLysIleAspPheAspGlyArgSerAspTyrSerLeuGlnLeuAsnA : 24 :!!:!!|||! !:!!! !|||!:!.!.! ! !! !:!! |||:!!|||||||||| SerLeuAlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnA 226892 : TCTCTCGCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATC : 226949 25 : rgTrpPheLeuLysProIleGlyAlaTrpProSerPheProSerThrSerArgLeuGl : 43 |||||.!.|||||||||:!!||| !|||||||||! ! !!.!!:!||||||:!!! rgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGl 226950 : GTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGG : 227006 44 : uArgIleMetSerPheValLeuIleValIleCysTyrIleIleLeuIleCysThrIle : 62 !||| !.!.|||!:::!!:!! ! !!:!!|||||| :!::!!! !! ! !:!: yArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeu 227007 : AAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTG : 227063 63 : IleProCysLeuLeuHisIleIleLeuGluAsnGluSerPheArgIleLysLeuArgL : 82 :!! !! !! !|||:!!:!::!!|||||| :!!.!! ! !! !! !|||!:!: ValSerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysM 227064 : GTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAA : 227123 83 : euIleGlyProValSerTyrLeuCysValGlySerIleAsnTyrThrThrLeuLeuLe : 101 !!|||||||||:!!|||!:!!!!...:!!..! !:!!!!.|||:!!! !||| !!! etIleGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPh 227124 : TGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTT : 227180 102 : uArgGlyLysAspIleArgTyrCysValGluHisMetGlnThrAspTrpArgThrVal : 120 !!.!! ! ! ||||||! ! ! |||||||||!..!!::!! !||||||!:!!.!:!! eHisGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIle 227181 : CCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATC : 227237 121 : LysArgGluLysAspGlnGlnValMetLeuLysSerAlaLysPheGlyArgTyrValT : 140 !:! ! !:!!|||::!.!.||||||:!!! !! !||| ! !:!|||||| ! :!!! ArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuI 227238 : AGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGA : 227297 141 : hrAlaSerThrAlaAlaPheMetGlnGlyGlyValPheCysTyrCysPheMetThrAl : 159 !.!!! ! !.!! !|||:!: ...... ::: .!!:!:..! ! leThrIleCysThrPhePheValPheSerSerPheValPhePheTyrIleValValPr 227298 : TCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACC : 227354 160 : aLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleValHisGlnLeuPro : 178 !:!!!:!.!!! ! !:!! !..!! !:!!! !!.!!.!! ! ! !|||:!!||| oIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetPro 227355 : TATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCG : 227411 179 : TyrValIleTyrLysGluLeuIleAspIleAsnGluSerProThrAsnGluIleIleL : 198 !:! !.!! ||| :!! !|||:!!..! ! |||||| !|||||||||.!!! PheProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIlePheP 227412 : TTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCT : 227471 199 : euPheMetGlnPheLeuThrGlyPheIleValSerSerSerThrLeuGlyIleLeuSe : 217 !!! :!:||||||:!!||||||.!!:!::!! !.!! !|||! !!.! !! !|| heSerValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSe 227472 : TTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAG : 227528 218 : rIleThrValValLeuIleAlaHisAlaCysGlyGlnLeuAsnValValMetThrTrp : 236 |!!:.!!!.!:!!||| !.!|||||||||||||||:!!.!.|||:!!:!!:!!||| rMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrp 227529 : TATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGG : 227585 237 : IleThrGluPheValAsnGluSerArgLysGluLysIleAlaProPheGluAsnIleG : 256 :!: !.!.!!.:!!:!!! !!! ! ! !!..! !.!!! ! !!!:!..|||! LeuGlyHisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAspAspArgIleA 227586 : CTGGGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCG : 227645 257 : lyIleIleValGluArgHisLeuArgThrLeuSerPheValSerSerIle : 272 .!! !|||||| !.!|||:!!|||! !|||!.!! !|||!!!!!!||| laSerIleValThrHisHisValArgIleLeuLysCysValThrCysIle 227646 : CTAGCATCGTCACTCACCACGTTCGAATATTGAAGTGTGTAACGTGTATC : 227695 vulgar: gi|350422503|ref|XP_003493183.1| 4 272 . KQ414889.1 226891 227695 + 381 M 268 804 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226892 227695 381 + . gene_id 15 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226892 227695 . + . KQ414889.1 exonerate:protein2genome:local exon 226892 227695 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226892 227695 381 + . alignment_id 15 ; Query gi|350422503|ref|XP_003493183.1| ; Align 226892 5 804 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 359 Query range: 300 -> 405 Target range: 277371 -> 277842 301 : GluTrpSerAspSerAspIleGlnIleLeuThrThrTyrSerMetLeuLeuAlaSerI : 320 ||||||||||||||||||:!!|||! !:!!||||||:!!! !|||:!!||| !|||! GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 321 : leCysPheAsnIlePheValIleCysTyrIleGlyGluThrLeuThrGluGln >>> : 338 !:|||||||||||||||..!:!!|||||||||||||||! !|||||||||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 339 : > Target Intron 1 >>>> SerArgLysValGlyAspValValTyrMetAlaA : 349 72 bp !!!!:!|||||||||!!:||||||||||||.!!| ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 350 : snTrpTyrTyrLeuThrGluLysArgIleLeuGluLeuIleLeuIleIleMetArgSe : 368 |||||||||||||| !!!!:||| !||||||.!.|||:!!||||||||| ||||| snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 369 : rSerValValValGluIleThrAlaGlyLysIleIleHisMetSerIleGlnThrPhe : 387 ||||:::|||::::::|||||||||||||||:::|||...||||||:!: ! |||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 388 : SerThr >>>> Target Intron 2 >>>> ValIleLysThrAlaPheThrTy : 397 .!! ! 84 bp ||||||||||||.!!|||...|| GlyAsp++ ++ValIleLysThrThrPheAlaTy 277703 : GGCGATgt.........................agGTAATAAAAACCACTTTCgcgta : 277816 398 : rLeuAsnLeuLeuArgGlnValThr : 405 |||||||:::|||||||||..!||| rLeuAsnIleLeuArgGlnThrThr 277817 : tttaaatattctacgCCAAACGACG : 277842 vulgar: gi|350422503|ref|XP_003493183.1| 300 405 . KQ414889.1 277371 277842 + 359 M 37 111 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277842 359 + . gene_id 16 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277842 359 + . alignment_id 16 ; Query gi|350422503|ref|XP_003493183.1| ; Align 277372 301 111 ; Align 277555 338 156 ; Align 277795 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 271 Query range: 300 -> 393 Target range: 244441 -> 244826 301 : GluTrpSerAspSerAspIleGlnIleLeuThrThrTyrSerMetLeuLeuAlaSerI : 320 ||||||:!!!!:|||||| !:!!||||||! !||||||! !!!: !|||!.!:!!| GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheIleAlaLeuValAlaI 244442 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTATAGCACTCGTTGCTA : 244499 321 : leCysPheAsnIlePheValIleCysTyrIleGlyGluThrLeuThrGluGln >>> : 338 || !! !|||! !|||:!!:!!|||||||||.!!!!:! !|||||||||||| leValSerAsnThrPheIleLeuCysTyrIleSerAspArgLeuThrGluGln++ 244500 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGACAGGCTGACAGAACAGgt... : 244555 339 : > Target Intron 1 >>>> SerArgLysValGlyAspValValTyrMetAlaA : 349 106 bp !!! !|||||||||!!:||||||||||||.!!: ++CysLeuLysValGlyGluValValTyrMetThrA 244556 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 244692 350 : snTrpTyrTyrLeuThrGluLysArgIleLeuGluLeuIleLeuIleIleMetArgSe : 368 !!|||||||||||| !!:!!!:!|||||||||!!:|||||||||||||||! ||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSe 244693 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATC : 244749 369 : rSerValValValGluIleThrAlaGlyLysIleIleHisMetSerIleGlnThrPhe : 387 |!:!:!!||||||||||||||||||||||||:!!:!!|||||||||:!! ! |||||| rAsnMetValValGluIleThrAlaGlyLysValLeuHisMetSerLeuTyrThrPhe 244750 : GAACATGGTCGTTGAAATCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTC : 244806 388 : SerThrValIleLysThr : 393 .!! !|||! !:!!||| GlyAspValSerGluThr 244807 : GGCGATGTAAGTGAAACT : 244826 vulgar: gi|350422503|ref|XP_003493183.1| 300 393 . KQ414889.1 244441 244826 + 271 M 37 111 5 0 2 I 0 102 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244442 244826 271 + . gene_id 17 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244442 244552 . + . KQ414889.1 exonerate:protein2genome:local exon 244442 244552 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244553 244554 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244553 244658 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244657 244658 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244659 244826 . + . KQ414889.1 exonerate:protein2genome:local exon 244659 244826 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244442 244826 271 + . alignment_id 17 ; Query gi|350422503|ref|XP_003493183.1| ; Align 244442 301 111 ; Align 244659 338 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 257 Query range: 300 -> 393 Target range: 254071 -> 254442 301 : GluTrpSerAspSerAspIleGlnIleLeuThrThrTyrSerMetLeuLeuAlaSerI : 320 ||||||!!!!!:|||||| !|||!!:||| !||||||! !:!: !|||!.!:!!: GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaV 254072 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTG : 254129 321 : leCysPheAsnIlePheValIleCysTyrIleGlyGluThrLeuThrGluGlnSerAr : 339 !! ! ||| |||:::||||||||||||.!!!!:! !|||||||||||| !!: alValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGlnValGl 254130 : TTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGGTACA : 254186 340 : g >>>> Target Intron 1 >>>> LysValGlyAspValValTyrMetAlaA : 349 ! 92 bp |||||||||!!:||||||||||||.!!: n+- -+LysValGlyGluValValTyrMetThrA 254187 : Aga.........................tgAAAGTTGGTGAAGTGGTTTACATGACAG : 254308 350 : snTrpTyrTyrLeuThrGluLysArgIleLeuGluLeuIleLeuIleIleMetArgSe : 368 !!|||||||||||| !!:!!!:!|||||||||!!:|||||||||||||||! ||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSe 254309 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATC : 254365 369 : rSerValValValGluIleThrAlaGlyLysIleIleHisMetSerIleGlnThrPhe : 387 |!:!||||||||||||||||||||||||||||||...|||||||||:!! ! |||||| rAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPhe 254366 : GAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTC : 254422 388 : SerThrValIleLysThr : 393 .!! !|||! !:!!||| GlyAspValSerGluThr 254423 : GGCGATGTAAGTGAAACT : 254442 vulgar: gi|350422503|ref|XP_003493183.1| 300 393 . KQ414889.1 254071 254442 + 257 M 39 117 5 0 2 I 0 88 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254072 254442 257 + . gene_id 18 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254072 254188 . + . KQ414889.1 exonerate:protein2genome:local exon 254072 254188 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254189 254190 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 254189 254280 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254279 254280 . + . intron_id 0 ; splice_site "TG" KQ414889.1 exonerate:protein2genome:local cds 254281 254442 . + . KQ414889.1 exonerate:protein2genome:local exon 254281 254442 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254072 254442 257 + . alignment_id 18 ; Query gi|350422503|ref|XP_003493183.1| ; Align 254072 301 117 ; Align 254281 340 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 236 Query range: 300 -> 393 Target range: 238411 -> 238796 301 : GluTrpSerAspSerAspIleGlnIleLeuThrThrTyrSerMetLeuLeuAlaSerI : 320 ||||||:!!!!:|||||| !:!!||||||! !||||||! !:!: !|||!.!:!!| GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheValAlaLeuValAlaI 238412 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTGTAGCACTCGTTGCTA : 238469 321 : leCysPheAsnIlePheValIleCysTyrIleGlyGlu{T} >>>> Target Int : 333 || !! !|||! !|||:!!:!!|||||||||.!!|||{!} 106 b leValSerAsnThrPheIleLeuCysTyrIleSerGlu{A}+- 238470 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGAA{A}gg............... : 238511 334 : ron 1 >>>> {hr}LeuThrGluGlnSerArgLysValGlyAspValValTyrMet : 347 p { !} ! ! !!|||!!! !|||||||||!!:|||||||||||| ++{rg}AsnCys***GlnCysLeuLysValGlyGluValValTyrMet 238512 : ..........ag{GA}AATTGTTAACAGTGCTTGAAAGTTGGTGAAGTGGTTTACATG : 238656 348 : AlaAsnTrpTyrTyrLeuThrGluLysArgIleLeuGluLeuIleLeuIleIleMetA : 367 .!!:!!|||||||||||| !!:!!!:!|||||||||!!:|||||||||||||||! | ThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysA 238657 : ACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAAC : 238716 368 : rgSerSerValValValGluIleThrAlaGlyLysIleIleHisMetSerIleGlnTh : 386 |||||!:!|||||||||:!!:!!||||||||||||:!!:!!|||||||||:!! ! || rgSerAsnValValValLysValThrAlaGlyLysValLeuHisMetSerLeuTyrTh 238717 : GATCGAACGTGGTCGTTAAAGTCACCGCTGGAAAAGTATTACATATGTCGCTTTACAC : 238773 387 : rPheSerThrValIleLysThr : 393 ||||.!! !|||! !:!!||| rPheGlyAspValSerGluThr 238774 : GTTCGGCGATGTAAGTGAAACT : 238796 vulgar: gi|350422503|ref|XP_003493183.1| 300 393 . KQ414889.1 238411 238796 + 236 M 32 96 S 0 1 5 0 2 I 0 102 3 0 2 S 1 2 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238412 238796 236 + . gene_id 19 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 238412 238508 . + . KQ414889.1 exonerate:protein2genome:local exon 238412 238508 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238509 238510 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local intron 238509 238614 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 238613 238614 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238615 238796 . + . KQ414889.1 exonerate:protein2genome:local exon 238615 238796 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238412 238796 236 + . alignment_id 19 ; Query gi|350422503|ref|XP_003493183.1| ; Align 238412 301 96 ; Align 238617 334 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 221 Query range: 17 -> 266 Target range: 303196 -> 304866 18 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerPheP : 37 ||| ! !:!!! !!:!!:!|||.!!|||||| !!:!!||| !||||||:!! ! TyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTrpProAlaVal- 303197 : TACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTGGCCAGCCGTG- : 303254 38 : roSerThrSerArgLeuGluArgIleMetSerPheValLeuIleValIleCysTyrIl : 56 !..!..! !! ! !!.!!:!: !! :!! !|||! !:!! !! !!:! -----LeuAspGluThrAlaGlyPheLeuProLysIleThrIleGlyLeuSerAsnLe 303255 : -----TTGGACGAAACCGCAGGATTCCTACCAAAAATCACCATTGGACTCAGTAATTT : 303305 57 : eIleLeuIleCysThrIleIleProCysLeuLeuHisIleIleLeuGluAsnGluSer : 75 ::!!|||:!!! !|||:!:|||||||||:!!||||||||||||!!!|||.!.:!!..! uValLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnLysAsp 303306 : GGTTCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAAAGGAT : 303362 76 : PheArg >>>> Target Intron 1 >>>> IleLysLeuArgLeuIleGlyPr : 85 ! ! 938 bp ||| !! !!:!||| !!.! ThrIle-+ +-IleLeuArgLysLeuTyrAlaTy 303363 : ACGATAat.........................aaATTTTACGTAAACTTTACGCTTA : 304330 86 : oValSerTyrLeuCysValGlySerIleAsnTyrThrThrLeuLeuLeuArgGlyLys : 104 !:!!|||! |||! ! ! ! ! !.!.|||:!!! !||| ::: ||| rIleSerSerLeuTyrProPheHisArgGlnTyrSerIleLeuProCysLysLeuLys 304331 : TATTAGCTCATTATATCCCTTCCACCGACAATATTCTATACTTccttgcaaattaaaa : 304387 105 : AspIleArgTyrCysValGluHisMetGlnThrAspTrpArgThrValLysArgGluL : 124 ::: !!:! ! !! ! !!:!:...|||! !::..! !|||:!! ! ! ArgLeuValPheArg***GlyAspLeuSerThrGlyTyrGluGlnValGluSerLeuA 304388 : cgtttaGTGTTTCGATAAGGGGATCTCTCTACTGGATATGAACAGGTGGAATCTCTCA : 304447 125 : ysAspGlnGlnValMetLeuLysSerAlaLysPheGlyArgTyrValThrAlaSerTh : 143 :!|||!:::!!:!!|||||||||! !!.!:!!.!.|||||| !!:!!||| !! ! rgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIleCy 304448 : GAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAATCTG : 304504 144 : rAlaAlaPheMetGlnGlyGlyValPheCysTyrCysPheMetThrAlaLeuSerThr : 162 !||| !|||||| ! !|||! ! ! !||| ! :!:! ! !!!!:!!||| sAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheAlaThr 304505 : CGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCGACC : 304561 163 : GluValIleGlnValGlyAsnGluThrArgIleValHisGlnLeuProTyrValIleT : 182 ! !..! ! |||! !.!. ! !.!|||! :!! ! ! !||| !||| !! !| GlyThr---TyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProThrT 304562 : GGAACG---TATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACCT : 304618 183 : yrLysGluLeuIleAspIleAsnGluSerProThrAsnGluIleIleLeuPheMetGl : 201 ||!..! |||.!!|||:!!.!. !||||||! ! !!|||:!::!!! !|||:!:!! yrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheValHi 304619 : ACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCA : 304675 202 : nPheLeuThrGlyPheIleValSerSerSerThrLeuGlyIleLeuSerIleThrVal : 220 .! !:!! !|||!:!:!!:!!! !|||! !||| !||| !! !.!!:!!.!!!.! sCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAla 304676 : TTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCT : 304732 221 : ValLeuIleAlaHisAlaCysGlyGlnLeuAsnValValMetThrTrpIleThrGluP : 240 :!!!!! !.!!|||||||||||||||:!!:!!:!!||||||:!! ! :!: !!!:. LeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAspL 304733 : CTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGATC : 304792 241 : heValAsnGluSerArgLysGluLysIleAlaProPheGluAsnIleGlyIleIleVa : 259 !!||||||... ||||||..! !! ! ! !:!!...:!! ! !||||| euValAsnSer------LysGluSerSerAspLeuAspLysArgLeuIleGluIleVa 304793 : TTGTCAACAGC------AAAGAATCATCTGATTTAGATAAACGATTAATAGAAATTGT : 304843 260 : lGluArgHisLeuArgThrLeu : 266 ||||!.!|||||||||! !||| lGluHisHisLeuArgIleLeu 304844 : TGAGCATCATTTGCGAATTTTA : 304866 vulgar: gi|350422503|ref|XP_003493183.1| 17 266 . KQ414889.1 303196 304866 + 221 M 19 57 G 2 0 M 39 117 5 0 2 I 0 934 3 0 2 M 87 261 G 1 0 M 78 234 G 2 0 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303197 304866 221 + . gene_id 20 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303197 303370 . + . KQ414889.1 exonerate:protein2genome:local exon 303197 303370 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 303371 303372 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 303371 304308 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304307 304308 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 304309 304866 . + . KQ414889.1 exonerate:protein2genome:local exon 304309 304866 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 303197 304866 221 + . alignment_id 20 ; Query gi|350422503|ref|XP_003493183.1| ; Align 303197 18 57 ; Align 303254 39 117 ; Align 304309 78 261 ; Align 304570 166 234 ; Align 304804 246 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 217 Query range: 284 -> 405 Target range: 301638 -> 302163 285 : LeuArgSerThrLeuHisMetCysMetLeuSerTyrTyrIleValThrGluTrpSerA : 304 ......|||||||||:!! .!.||| !! ! ! !! !||||||..!: PheGluSerThrLeuAsnAlaLysPheLeuArgValIle***Phe***GluTrpGlnA 301639 : tttgaatctACTTTAAATGCAAAGTTTTTACGAGTAATTTGATTTTAGGAATGGCAAA : 301696 305 : spSerAspIleGlnIleLeuThrThrTyrSerMetLeuLeuAlaSerIleCysPheAs : 323 !!||||||! !:!! !|||!:!! !! ||||||.!!|||.!! !||||| snSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAs 301697 : ATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAA : 301753 324 : nIlePheValIleCysTyrIleGlyGluThrLeuThrGluGln >>>> Target I : 338 |||||||:!!.!!|||||||||||||||! !|||:!!|||||| 80 nIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301754 : TATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt............. : 301800 339 : ntron 1 >>>> SerArgLysValGlyAspValValTyrMetAlaAsnTrpTyrTy : 352 bp !!!!!!:!!:!!|||...!.! !||| ! !:!!|||||| ! ++CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAs 301801 : ............agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAA : 301920 353 : rLeuThrGluLysArgIleLeuGluLeuIleLeuIleIleMetArgSerSerValVal : 371 !||| !!! !|||||| !! !!!:|||||||||:!!! !:!!! !|||..! ! ! nLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrPro 301921 : TTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCG : 301977 372 : ValGluIleThrAlaGlyLysIleIleHisMetSerIleGlnThrPheSerThr >> : 390 !:!!:!!|||||||||||||||||| !!:!:|||:!:.!.|||||||||:!! ProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSer++ 301978 : CCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTgt.. : 302036 391 : >> Target Intron 2 >>>> ValIleLysThrAlaPheThrTyrLeuAsnLeu : 400 82 bp |||:!:||||||:!! ! ..!|||||||||||| ++ValValLysThrSerValValTyrLeuAsnLeu 302037 : .......................agGTGGTGAAAACATCGGTGGTGTACTTGAATTTA : 302146 401 : LeuArgGlnValThr : 405 |||||| !|||||| LeuArgThrValThr 302147 : CTGCGAACAGTTACA : 302163 vulgar: gi|350422503|ref|XP_003493183.1| 284 405 . KQ414889.1 301638 302163 + 217 M 53 159 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301639 302163 217 + . gene_id 21 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301639 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301639 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302163 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302163 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301639 302163 217 + . alignment_id 21 ; Query gi|350422503|ref|XP_003493183.1| ; Align 301639 285 159 ; Align 301878 338 156 ; Align 302116 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 179 Query range: 328 -> 395 Target range: 272990 -> 273191 329 : TyrIleGlyGluThrLeuThrGluGlnSerArgLysValGlyAspValValTyrMetA : 348 |||::: ::: ::: ||| :::|||:::|||!!:||||||||||||. TyrLeuProLysLysAsnSer***GlnCysLysLysIleGlyGluValValTyrMetT 272991 : TACttaccgaagaaaaattcttaacagtgtaaaaaaattggcGAGGTAGTTTACATGA : 273048 349 : laAsnTrpTyrTyrLeuThrGluLysArgIleLeuGluLeuIleLeuIleIleMetAr : 367 !!||||||||||||||| !!! ||| !||||||!!:||||||||||||||| || hrAsnTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerAr 273049 : CGAACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAG : 273105 368 : gSerSerValValValGluIleThrAlaGlyLysIleIleHisMetSerIleGlnThr : 386 |!!!|||||||||:!!:!!||||||||||||!:!|||:!!! !||||||:!: ! ||| gCysSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThr 273106 : ATGCAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACG : 273162 387 : PheSerThrValIleLysThrAlaPhe : 395 |||.!! !||| ... ||| PheGlyAspValArgSerGlnLeuPhe 273163 : TTCGGCGATGTACgttctcaattattt : 273191 vulgar: gi|350422503|ref|XP_003493183.1| 328 395 . KQ414889.1 272990 273191 + 179 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272991 273191 179 + . gene_id 22 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272991 273191 . + . KQ414889.1 exonerate:protein2genome:local exon 272991 273191 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272991 273191 179 + . alignment_id 22 ; Query gi|350422503|ref|XP_003493183.1| ; Align 272991 329 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 17 -> 116 Target range: 299689 -> 299989 18 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerPheP : 37 |||!!!||||||:!! !!:!|||!!.|||||||||||||||!.!|||! !! !.!. TyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpArgLeuLeuA 299690 : TACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGCGATTGCTAG : 299747 38 : roSer<->ThrSerArgLeuGluArgIleMetSerPheValLeuIleValIleCysTy : 55 !..! :!!|||!:!||||||!.!:!!:!:|||.!!||||||!!:..!||||||!: spGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMetThrIleCysPh 299748 : ATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATGACAATATGCTT : 299804 56 : rIleIleLeuIleCysThrIleIleProCysLeuLeuHisIleIleLeuGluAsnGlu : 74 ! !! !|||.!!! !! !:!!:!:|||! ! !! !:!!|||.!!!!!! !.!.:!! eSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePhePheAlaGluLys 299805 : CTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCTTCGCGGAGAAA : 299861 75 : SerPheArgIleLysLeuArgLeuIleGlyProValSerTyrLeuCysValGlySerI : 94 |||.!.!.!:!!|||:!!!:!:!!.!!|||||||||.!!!:!! ! ! !..!! !: SerIleHisValLysValLysValPheGlyProValGlyPheCysLeuSerSerIleV 299862 : AGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCATCG : 299921 95 : leAsnTyrThrThrLeuLeuLeuArgGlyLysAspIleArgTyrCysValGluHisMe : 113 !!!!.||| ! !|||! !|||!.!||| ! .!!..! |||:!!:!!|||:! alLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCysIleGlnHisVa 299922 : TCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGCATCCAACACGT : 299978 114 : tGlnThrAsp : 116 ::!!! !||| lGluArgAsp 299979 : CGAGAGAGAC : 299989 vulgar: gi|350422503|ref|XP_003493183.1| 17 116 . KQ414889.1 299689 299989 + 171 M 21 63 G 0 3 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299690 299989 171 + . gene_id 23 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299690 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299690 299989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299690 299989 171 + . alignment_id 23 ; Query gi|350422503|ref|XP_003493183.1| ; Align 299690 18 63 ; Align 299756 39 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 335 -> 396 Target range: 283273 -> 283456 336 : GluGlnSerArgLysValGlyAspValValTyrMetAlaAsnTrpTyrTyrLeuThrG : 355 ..!|||!!!!:!|||||||||!!:||||||||||||.!!|||! !!:!|||||| !!! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 356 : luLysArgIleLeuGluLeuIleLeuIleIleMetArgSerSerValValValGluIl : 374 !:||| !||||||.!.|||:!!||||||||| |||||||||:::|||::::::|| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 375 : eThrAlaGlyLysIleIleHisMetSerIleGlnThrPheSerThrValIleLysThr : 393 |||||||...|||:::|||...|||||| ! ||||||..! !||| !..! ! eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspValArgSerLeu 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTACGTTCACTT : 283445 394 : AlaPheThr : 396 !|||||| LeuPheThr 283446 : CTTTTTACA : 283456 vulgar: gi|350422503|ref|XP_003493183.1| 335 396 . KQ414889.1 283273 283456 + 161 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283456 161 + . gene_id 24 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283456 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283456 161 + . alignment_id 24 ; Query gi|350422503|ref|XP_003493183.1| ; Align 283274 336 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 300 -> 359 Target range: 272836 -> 273013 301 : GluTrpSerAspSerAspIleGlnIleLeuThrThrTyrSerMetLeuLeuAlaSerI : 320 ||||||!!!||| !|||.!!|||! !||||||||||||! !|||:!!||| !|||! GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 321 : leCysPheAsnIlePheValIleCysTyrIleGlyGluThrLeuThrGluGlnSerAr : 339 !: ||||||||||||:::::!|||||||||||||||! !|||||||||::! !! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArgValMe 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGGTAAT : 272951 340 : gLysValGlyAspValValTyrMetAlaAsnTrpTyrTyrLeuThrGluLysArgIle : 358 ::: ::: ! !!..!! !:! |||||||||::::::... tGln***PheValAsnIleGlnSerLysThr***PheIleLeuThrGluGluLysPhe 272952 : gcaataatttgtaaatatacaaTCGAAGACGTGATTTATACttaccgaagaaaaattc : 273008 359 : Leu : 359 ||| Leu 273009 : tta : 273013 vulgar: gi|350422503|ref|XP_003493183.1| 300 359 . KQ414889.1 272836 273013 + 141 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273013 141 + . gene_id 25 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272837 273013 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 273013 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273013 141 + . alignment_id 25 ; Query gi|350422503|ref|XP_003493183.1| ; Align 272837 301 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 336 -> 405 Target range: 261922 -> 262201 337 : GlnSerArgLysValGlyAspValValTyrMetAlaAsnTrpTyrTyrLeuThrGluL : 356 |||!!! !||||||||||||||||||||||||.!!||||||||||||||| !!!!:| GlnCysSerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuProAspL 261923 : CAGTGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACCTGATA : 261980 357 : ysArgIleLeuGluLeuIleLeuIleIleMetArg-SerSerValValValGluIleT : 375 ||!!!||||||!!:||||||||||||||| |||#!:! !! !! !:!!... !! ysSerIleLeuAspLeuIleLeuIleIleAlaArg#AsnArgArgGluIleSerSerA 261981 : AAAGTATCCTTGATTTGATTTTGATCATTGCACGAAAACCGCCGGGAAATTAGTTCAA : 262038 376 : hrAlaGlyLysIleIleHisMet{S} >>>> Target Intron 1 >>>> {er : 383 .!!.!||| ! !:!!!.. {|} 71 bp {|| snValGlyLeuHisValArgArg{S}++ +-{er 262039 : ATGTCGGTTTACACGTTCGGCGA{T}gt.........................ac{CA : 262134 384 : }IleGlnThrPheSerThrValIleLysThrAlaPheThrTyrLeuAsnLeuLeuArg : 402 }! !! ! !.!.! ! !|||:!!||||||||||||.!!|||||||||||||||||| }SerProLeuIlePheGlnValValLysThrAlaPheAlaTyrLeuAsnLeuLeuArg 262135 : }AGTCCGTTGATATTCCAGGTGGTTAAAACTGCTTTCGCGTATCTGAATCTGTTGCGT : 262190 403 : GlnValThr : 405 |||:!!||| GlnMetThr 262191 : CAAATGACG : 262201 vulgar: gi|350422503|ref|XP_003493183.1| 336 405 . KQ414889.1 261922 262201 + 136 M 31 93 F 0 1 M 15 45 S 0 1 5 0 2 I 0 67 3 0 2 S 1 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261923 262201 136 + . gene_id 26 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 261923 262062 . + . KQ414889.1 exonerate:protein2genome:local exon 261923 262062 . + . insertions 0 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local splice5 262063 262064 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 262063 262133 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 262132 262133 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 262134 262201 . + . KQ414889.1 exonerate:protein2genome:local exon 262134 262201 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 261923 262201 136 + . alignment_id 26 ; Query gi|350422503|ref|XP_003493183.1| ; Align 261923 337 93 ; Align 262017 368 45 ; Align 262136 384 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 300 -> 337 Target range: 283096 -> 283207 301 : GluTrpSerAspSerAspIleGlnIleLeuThrThrTyrSerMetLeuLeuAlaSerI : 320 ||||||||||||.!!|||:!!|||! !:!!||||||:!!! !|||:!!||| !|||! GluTrpSerAspGlyAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 283097 : GAATGGTCTGACGGCGATGTTCAGACTATGACTACGCATTTCATGATCCTTATATCCA : 283154 321 : leCysPheAsnIlePheValIleCysTyrIleGlyGluThrLeuThrGluGln : 337 !:|||||||||||||||..!:!!! !|||||||||:!!! !|||||||||||| etCysPheAsnIlePheThrValTyrTyrIleGlyLysIleLeuThrGluGln 283155 : TgtgtttcaacatttttacAGTATACTATATCGGGAAAATACTAACTGAACAG : 283207 vulgar: gi|350422503|ref|XP_003493183.1| 300 337 . KQ414889.1 283096 283207 + 134 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283097 283207 134 + . gene_id 27 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283097 283207 . + . KQ414889.1 exonerate:protein2genome:local exon 283097 283207 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283097 283207 134 + . alignment_id 27 ; Query gi|350422503|ref|XP_003493183.1| ; Align 283097 301 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 292 -> 337 Target range: 305076 -> 305211 293 : MetLeuSerTyrTyrIleValThrGluTrpSerAspSerAspIleGlnIleLeuThrT : 312 .!.||| |||::: !!!:|||..!..!|||:!!! ! ! !||||||| PheLeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrT 305077 : TTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAA : 305134 313 : hrTyrSerMetLeuLeuAlaSerIleCysPheAsnIlePheValIleCysTyrIleGl : 331 |||||!!!:!!|||||| !|||:!! ||||||||||||:!!:!!||||||||||| hrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGl 305135 : CATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGG : 305191 332 : yGluThrLeuThrGluGln : 337 ||||! !|||! !|||:!! yGluIleLeuMetGluLys 305192 : TGAGATTCTTATGGAAAAG : 305211 vulgar: gi|350422503|ref|XP_003493183.1| 292 337 . KQ414889.1 305076 305211 + 120 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305077 305211 120 + . gene_id 28 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305077 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305077 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305077 305211 120 + . alignment_id 28 ; Query gi|350422503|ref|XP_003493183.1| ; Align 305077 293 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 294 -> 337 Target range: 210645 -> 210774 295 : SerTyrTyrIleValThrGluTrpSerAspSerAspIleGlnIleLeuThrThrTyrS : 314 ||| ! !:!:!!:!! !||||||..!..!!.!||| ! ! ! ! !||||||! SerGlnPheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrI 210646 : TCGCAATTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACA : 210703 315 : erMetLeuLeuAlaSerIleCysPheAsnIlePheValIleCysTyrIleGlyGluTh : 333 !:!:||||||.!!|||:!! ||||||||||||:!!.!!|||||||||||||||.. leValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluVa 210704 : TAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGT : 210760 334 : rLeuThrGluGln : 337 !|||.!!|||||| lLeuAlaGluGln 210761 : GTTGGCTGAACAg : 210774 vulgar: gi|350422503|ref|XP_003493183.1| 294 337 . KQ414889.1 210645 210774 + 111 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210646 210774 111 + . gene_id 29 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 210646 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210646 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210646 210774 111 + . alignment_id 29 ; Query gi|350422503|ref|XP_003493183.1| ; Align 210646 295 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 300 -> 337 Target range: 224323 -> 224434 301 : GluTrpSerAspSerAspIleGlnIleLeuThrThrTyrSerMetLeuLeuAlaSerI : 320 |||||||||...||| !!:!! ! ! !..!||||||! !!!:|||||| !|||: GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 321 : leCysPheAsnIlePheValIleCysTyrIleGlyGluThrLeuThrGluGln : 337 :: ||||||||||||:::...||||||||||||||| !:!!.!!|||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcag : 224434 vulgar: gi|350422503|ref|XP_003493183.1| 300 337 . KQ414889.1 224323 224434 + 110 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224434 110 + . gene_id 30 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224434 110 + . alignment_id 30 ; Query gi|350422503|ref|XP_003493183.1| ; Align 224324 301 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 292 -> 337 Target range: 214605 -> 214740 293 : MetLeuSerTyrTyrIleValThrGluTrpSerAspSerAspIleGlnIleLeuThrT : 312 ::::::...::: |||::: ||||||!:!...!:!:!!:!! !! ! !..!| IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 313 : hrTyrSerMetLeuLeuAlaSerIleCysPheAsnIlePheValIleCysTyrIleGl : 331 ||||| !:!!|||! ! !|||::: ||||||||||||:::...||||||||||| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 332 : yGluThrLeuThrGluGln : 337 |||| !:!!:!!|||||| yGluLeuValSerGluGln 214721 : CGAGCTTGTGTCTGAACAG : 214740 vulgar: gi|350422503|ref|XP_003493183.1| 292 337 . KQ414889.1 214605 214740 + 108 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 214740 108 + . gene_id 31 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 214740 108 + . alignment_id 31 ; Query gi|350422503|ref|XP_003493183.1| ; Align 214606 293 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 300 -> 339 Target range: 228247 -> 228364 301 : GluTrpSerAspSerAspIleGlnIleLeuThrThrTyrSerMetLeuLeuAlaSerI : 320 ||||||!:! !.!!!::!! !.!! !..!||||||||| !|||||| !|||. GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerP 228248 : GAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCT : 228305 321 : leCysPheAsnIlePheValIleCysTyrIleGlyGluThrLeuThrGluGlnSerAr : 339 !! ||||||||||||:::...|||||||||||||||! !:!!.!!|||!!. !|| heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluHisValAr 228306 : TTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACGTAAG : 228362 340 : g : 339 | g 228363 : A : 228364 vulgar: gi|350422503|ref|XP_003493183.1| 300 339 . KQ414889.1 228247 228364 + 107 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228248 228364 107 + . gene_id 32 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 228248 228364 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228364 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228248 228364 107 + . alignment_id 32 ; Query gi|350422503|ref|XP_003493183.1| ; Align 228248 301 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1422 Query range: 0 -> 406 Target range: 256601 -> 258738 1 : MetThrAsnGluProValIleThrGluGlyAspSerAsnSerAsnSerAspTyrSerL : 20 |||||||||||| !!.!:!:..!:!! !:!!! !!!.||| !!||||||||||||| MetThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerL 256602 : ATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTC : 256659 21 : euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerSerSerSerTh : 39 |||||||||||||||||||||||||||||||||||||||||||| !!||||||||||| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 256660 : TCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCAC : 256716 40 : rThrArgLeuGluLysIleValSerPheIleLeuAsnIleIleCysPheThrSerVal : 58 ||||! !||||||::!! !||||||.!!:!!|||||||||:!!|||!:! !|||:!! rThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIle 256717 : TACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATA : 256773 59 : IleValThrAlaIleProSerLeuLeuLeuMetIleLeuGluAspGluSerIleTyrM : 78 :!: !!||| !||||||!!!||||||! !:!:.!!|||!!:|||!!:|||.!!|||| LeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrM 256774 : TTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAca : 256833 79 : etLysLeuLysThrLeuGlyProValSerHisTrpPheValSerSerAlaAsnTyrTh : 97 |||||:::|||......||||||:!!|||||||||.!!:!!|||!!!||||||||||| etLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrTh 256834 : tgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACAC : 256890 98 : rAlaLeuLeuIleArgGlyArgAspIleArgHisCysValGluHisIleGluAlaAsp : 116 | !||||||:!!!:!|||!:!|||||||||:!!||||||||||||||||||.!!||| rLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAsp 256891 : GTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGAT : 256947 117 : TrpArgThrValThrArgGluGluAspGlnHisValMetMetLysAsnAlaLysPheG : 136 ||||||! !|||! !||||||:!!||||||!!.||||||||||||||||||!:!|||| TrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheG 256948 : TGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCG : 257007 137 : lyArgTyrValAlaAlaSerCysAlaValPheMetGlnGlyGlyValLeuCysPheCy : 155 ||||||||||||||.!!! !||||||!.!.!!||||||.!!||||||...|||||| lyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePh 257008 : GTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttctt : 257064 156 : sPheValThrAlaLeuThrThrThrGluIleGlnIleGlyAsnGluThrArgValLeu : 174 !:!!||||||!.!||| ! !|||!!.:!:||||||||||||! !:!!:!! eValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleVal 257065 : cgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTG : 257121 175 : HisValLeuProCysAlaValTyrLysLysLeuValAsnValAspGluSerProAlaA : 194 !..||||||||| !.!!|||||||||||||||:!!|||||||||:!!||||||.!!| ArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrA 257122 : CGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGA : 257181 195 : snGluIleMetLeuPheLeuGlnIleTrpAlaAlaLeuIleAlaAsnSerSerThrVa : 213 ||||||||:!!:!!|||:!!|||! !|||:!!:!!:!!||||||!.!!!!|||||||| snGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrVa 257182 : ACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGT : 257238 214 : lGlyIlePheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGlyGlnLeuAspVal : 232 |.!!|||||||||||||||||||||!!!|||.!!||||||! !||||||||| !||| lSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrVal 257239 : TAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTG : 257295 233 : IleMetMetTrpIleThrLysPheValLysGluAlaArgGluGlnLysGluThrSerS : 252 :!!||| !|||||||||:!!||||||!!.|||:!!|||.!.!::::::::||| LeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheP 257296 : CTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttc : 257355 253 : erPheArgLysIleGlyValIleValGluArgHisLeuArgThrLeu{As} >>>> : 268 |||!:!:!!||||||||||||||||||!.!|||||||||..!|||{!:} roPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Se}++ 257356 : ctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt..... : 257407 269 : Target Intron 1 >>>> {n}PheIleSerCysIleGluAspValMetAsnArg : 279 76 bp {!}|||||||||! !||||||!!:|||||||||||| ++{r}PheIleSerTyrIleGluGluValMetAsnArg 257408 : ....................ag{T}TTCATATCATATATCGAGGAAGTGATGAACCGA : 257512 280 : IleTyrPheLeuGluMetPheArgCysThrMetAspIleCysValIleGlyTyrTyrI : 299 |||! !|||||||||:!!||||||||||||:!!! !||||||:!!:!:|||||||||| IleCysPheLeuGluLeuPheArgCysThrLeuAlaIleCysMetLeuGlyTyrTyrI 257513 : ATATGTTTTTTAGAGTTGTTTAGATGCACGCTGGCTATATGCATGCTGGGATACTACA : 257572 300 : leLeuSer >>>> Target Intron 2 >>>> GluTrpAlaAspArgAspIle : 308 |||||:!! 684 bp ||||||:!! !::|||||| leLeuAla++ ++GluTrpSerThrGlnAspIle 257573 : TTCTTGCGgt.........................aggaATGGTCTACGCaagatatt : 258283 309 : GlnAsnLeuPheThrTyrPheMetMetLeuIleSerIleCysPheAsnIlePheValI : 328 ||||||||| :::|||||||||!!:|||||||||::: |||||||||||||||| GlnAsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValI 258284 : caaaatttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaa : 258343 329 : leCysTyrIleGlyGluIleLeuThrGluGln >>>> Target Intron 3 >>> : 339 |||||||||||||||||||||||||||||||| 90 bp leCysTyrIleGlyGluIleLeuThrGluGln++ 258344 : tatgttACATAGGTGAAATATTAACAGAACAGgt........................ : 258378 340 : > CysGlnLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAspL : 357 |||:!!|||||||||!!:|||||||||||||||:!!||||||||||||||||||| ++CysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspL 258379 : .agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACA : 258520 358 : ysIleIleLeuAspLeuIleLeuIleIleAlaArgSerSerMetValValHisIleTh : 376 ||! !||||||||||||||||||:!!|||||||||||||||:!!||||||!!.||||| ysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleTh 258521 : AAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCAC : 258577 377 : rAlaGlyLysLeuValHisMetSerValTyrThrPheGlyAsp >>>> Target I : 391 ||||||||||... |||||||||:!!|||||||||.!!||| 69 rAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAsp++ 258578 : CGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATgt............. : 258624 392 : ntron 4 >>>> ValValLysThrGlyPheAlaTyrLeuAsnLeuLeuArgGlnMe : 405 bp |||:!!||||||..!|||||||||||||||||||||||||||:! ++ValIleLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnVa 258625 : ............agGTAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGT : 258733 406 : tThr : 406 ::!! lSer 258734 : ATCG : 258738 vulgar: gi|350422508|ref|XP_003493185.1| 0 406 . KQ414889.1 256601 258738 + 1422 M 267 801 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256602 258738 1422 + . gene_id 1 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256602 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256602 257404 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256602 258738 1422 + . alignment_id 1 ; Query gi|350422508|ref|XP_003493185.1| ; Align 256602 1 801 ; Align 257482 269 99 ; Align 258265 302 111 ; Align 258466 339 156 ; Align 258691 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1421 Query range: 0 -> 406 Target range: 259721 -> 262201 1 : MetThrAsnGluProValIleThrGluGlyAspSerAsnSerAsnSerAspTyrSerL : 20 |||||||||:!! !!|||.!!..!||| !..!! !!.!|||:!!||||||||||||| MetThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerL 259722 : ATGACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCC : 259779 21 : euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerSerSerSerTh : 39 |||||!!!|||||||||||||||||||||||||||||||||||| !!||||||||||| euGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 259780 : TCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCAC : 259836 40 : rThrArgLeuGluLysIleValSerPheIleLeuAsnIleIleCysPheThrSerVal : 58 |||||||||||||||||||:!!||| !!||||||! !.!!||||||!:!!:!!!!:!! rThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIle 259837 : GACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATA : 259893 59 : IleValThrAlaIleProSerLeuLeuLeuMetIleLeuGluAspGluSerIleTyrM : 78 :!:|||||| !||||||!!!:!!|||! !|||:!!|||||| ! ||||||:!:|||| LeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrM 259894 : CTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACA : 259953 79 : etLysLeuLysThrLeuGlyProValSerHisTrpPheValSerSerAlaAsnTyrTh : 97 ||||| !|||..!|||||||||:!!!!!||||||||||||.!!!!! !|||||||| etLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrTh 259954 : TGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACAC : 260010 98 : rAlaLeuLeuIleArgGlyArgAspIleArgHisCysValGluHisIleGluAlaAsp : 116 |.!!||||||:!:|||||||||||||||! ! !||||||||||||:!:||| !||| rThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAsp 260011 : AACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGAT : 260067 117 : TrpArgThrValThrArgGluGluAspGlnHisValMetMetLysAsnAlaLysPheG : 136 ||||||! !:!!|||||||||:!!||||||:!!||||||:!!!:! !!|||||||||| TrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheG 260068 : TGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCG : 260127 137 : lyArgTyrValAlaAlaSerCysAlaValPheMetGlnGlyGlyValLeuCysPheCy : 155 ||||||||||||||||||||||||||!.!|||:!!||||||||||||||||||||||| lyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCy 260128 : GCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTG : 260184 156 : sPheValThrAlaLeuThrThrThrGluIleGlnIleGlyAsnGluThrArgValLeu : 174 |!!.||||||!.!|||!:!||| !! !||||||:!:|||||||||||||||:!!:!! sLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal 260185 : TTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTT : 260241 175 : HisValLeuProCysAlaValTyrLysLysLeuValAsnValAspGluSerProAlaA : 194 |||:!!|||||||||||||||||||||:!!|||:!!||||||:!!!!:|||||| !| HisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetA 260242 : CATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGA : 260301 195 : snGluIleMetLeuPheLeuGlnIleTrpAlaAlaLeuIleAlaAsnSerSerThrVa : 213 ||||||||:!:||| !!:!!|||.!! :!!!.!!!!|||!.!|||||||||||||| snGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrVa 260302 : ACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGT : 260358 214 : lGlyIlePheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGlyGlnLeuAspVal : 232 ||||||||||||||||||||||||||||.!!|||||||||||||||||||||:!!||| lGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnVal 260359 : TGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTG : 260415 233 : IleMetMetTrpIleThrLysPheValLysGluAlaArgGluGlnLysGluThrSerS : 252 :!!||| |||||||||:!!|||||| ! |||:!!|||.!.::!|||:!!! !:!! LeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaP 260416 : CTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTC : 260475 253 : erPheArgLysIleGlyValIleValGluArgHisLeuArgThrLeu{As} >>>> : 268 !!|||!:!:!!||||||||||||||||||!.!|||||||||.!!|||{!.} roPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeu{Th}++ 260476 : CTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC{AC}gt..... : 260527 269 : Target Intron 1 >>>> {n}PheIleSerCysIleGluAspValMetAsnArg : 279 257 bp {!}||||||||| !!||||||||||||||||||||| ++{r}PheIleSerArgIleGluAspValMetAsnArg 260528 : ....................ag{C}TTCATATCGCGTATCGAGGATGTGATGAACCGG : 260813 280 : IleTyrPheLeuGluMetPheArgCysThrMetAspIleCysValIleGlyTyrTyrI : 299 |||! !|||||||||:!!||||||||||||:!!|||||||||:!!:!!|||||||||| IleCysPheLeuGluLeuPheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrI 260814 : ATATGCTTCCTGGAGTTGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATA : 260873 300 : leLeuSer >>>> Target Intron 2 >>>> GluTrpAlaAspArgAspIle : 308 |||||! ! 852 bp |||||||||!!:!:!|||||| leLeuMet++ ++GluTrpAlaGluGlnAspIle 260874 : TTCTTATGgt.........................agGAATGGGCTGAGCAAGATATA : 261752 309 : GlnAsnLeuPheThrTyrPheMetMetLeuIleSerIleCysPheAsnIlePheValI : 328 |||||||||! !|||||||||||||||||||||:!!||||||||||||:!!|||:!!| GlnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheIleI 261753 : CAAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAA : 261812 329 : leCysTyrIleGlyGluIleLeuThrGluGln >>>> Target Intron 3 >>> : 339 |||||||||||||||||||||||||||||||| 81 bp leCysTyrIleGlyGluIleLeuThrGluGln++ 261813 : TCTGTTACATCGGTGAAATACTAACGGAACAGgt........................ : 261847 340 : > CysGlnLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAspL : 357 |||..!|||||||||!!:||||||||||||||||||||||||||||||||||||| ++CysSerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuProAspL 261848 : .agTGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACCTGATA : 261980 358 : ysIleIleLeuAspLeuIleLeuIleIleAlaArg-SerSerMetValValHisIleT : 376 ||! !||||||||||||||||||||||||||||||#!:! !! !! !:!! ! !! ysSerIleLeuAspLeuIleLeuIleIleAlaArg#AsnArgArgGluIleSerSerA 261981 : AAAGTATCCTTGATTTGATTTTGATCATTGCACGAAAACCGCCGGGAAATTAGTTCAA : 262038 377 : hrAlaGlyLysLeuValHisMet{S} >>>> Target Intron 4 >>>> {er : 384 .!!.!||| !! !|||!.. {|} 71 bp {|| snValGlyLeuHisValArgArg{S}++ +-{er 262039 : ATGTCGGTTTACACGTTCGGCGA{T}gt.........................ac{CA : 262134 385 : }ValTyrThrPheGlyAspValValLysThrGlyPheAlaTyrLeuAsnLeuLeuArg : 403 } ! !.!. !.!.||||||||||||!.!|||||||||||||||||||||||| }SerProLeuIlePheGlnValValLysThrAlaPheAlaTyrLeuAsnLeuLeuArg 262135 : }AGTCCGTTGATATTCCAGGTGGTTAAAACTGCTTTCGCGTATCTGAATCTGTTGCGT : 262190 404 : GlnMetThr : 406 ||||||||| GlnMetThr 262191 : CAAATGACG : 262201 vulgar: gi|350422508|ref|XP_003493185.1| 0 406 . KQ414889.1 259721 262201 + 1421 M 267 801 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 30 90 F 0 1 M 15 45 S 0 1 5 0 2 I 0 67 3 0 2 S 1 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259722 262201 1421 + . gene_id 2 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259722 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259722 260524 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262062 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262062 . + . insertions 0 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local splice5 262063 262064 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 262063 262133 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 262132 262133 . + . intron_id 3 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 262134 262201 . + . KQ414889.1 exonerate:protein2genome:local exon 262134 262201 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259722 262201 1421 + . alignment_id 2 ; Query gi|350422508|ref|XP_003493185.1| ; Align 259722 1 801 ; Align 260783 269 99 ; Align 261734 302 111 ; Align 261926 339 90 ; Align 262017 369 45 ; Align 262136 385 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 977 Query range: 0 -> 301 Target range: 266586 -> 267558 1 : MetThrAsnGluProValIleThrGluGlyAspSerAsnSerAsnSerAspTyrSerL : 20 |||.!!|||||| !!:!!:!!! !|||!.!:!! !|||||| ||||||||||||| MetAlaAsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerL 266587 : ATGGCTAACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCC : 266644 21 : euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerSerSerSerTh : 39 |||||||||||||||||||||||||||||||||||||||||||| !!! !||| !|| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuTh 266645 : TGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCAC : 266701 40 : rThrArgLeuGluLysIleValSerPheIleLeuAsnIleIleCysPheThrSerVal : 58 |:!!!:!||||||::!|||||||||!:! !|||! !:!!||||||!:! !|||:!! rSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIle 266702 : ATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATA : 266758 59 : IleValThrAlaIleProSerLeuLeuLeuMetIleLeuGluAspGluSerIleTyrM : 78 :!: !!|||!.!||||||!!!|||!!!! !:!::!!|||||||||||||||||| !! LeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgT 266759 : CTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTA : 266818 79 : etLysLeuLysThrLeuGlyProValSerHisTrpPheValSerSerAlaAsnTyrTh : 97 !|||:!!|||..!!!!||||||:!!|||||||||||||||.!!.!! !|||||||| hrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrTh 266819 : CGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACAC : 266875 98 : rAlaLeuLeuIleArgGlyArgAspIleArgHisCysValGluHisIleGluAlaAsp : 116 |.!!||||||:!!|||.!!!:!!!:|||||| !||||||||||||!!::!!.!!||| rThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAsp 266876 : CACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGAT : 266932 117 : TrpArgThrValThrArgGluGluAspGlnHisValMetMetLysAsnAlaLysPheG : 136 ||||||! !||||||||| !||||||:!!!!.||||||:!!|||||||||!:!.!!| TrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleG 266933 : TGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCG : 266992 137 : lyArgTyrValAlaAlaSerCysAlaValPheMetGlnGlyGlyValLeuCysPheCy : 155 ||||||||:!!||| !! !||||||!.!||||||||| !!||||||||| !!!:!|| lyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCy 266993 : GTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTG : 267049 156 : sPheValThrAlaLeuThrThrThrGluIleGlnIleGlyAsnGluThrArgValLeu : 174 | ! :!!||||||!!!|||! ! ! :!::!!:!!|||||||||||||||:!!:!! sValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleVal 267050 : TGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTA : 267106 175 : HisValLeuProCysAlaValTyrLysLysLeuValAsnValAspGluSerProAlaA : 194 |||:!!||||||||||||||||||||||||:!!:!! |||||| ||||||.!!| HisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrA 267107 : CATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGA : 267166 195 : snGluIleMetLeuPheLeuGlnIleTrpAlaAlaLeuIleAlaAsnSerSerThrVa : 213 ||||||||:!:||| !!! !|||.!! :!!!.!!!!|||!.!|||||||||..!|| snGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValVa 267167 : ACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGT : 267223 214 : lGlyIlePheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGlyGlnLeuAspVal : 232 |||| !||||||||||||||||||!!!||||||||||||||||||||||||..!||| lGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerVal 267224 : CGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTG : 267280 233 : IleMetMetTrpIleThrLysPheValLysGluAlaArgGluGlnLysGluThrSerS : 252 :!:||||||||||||! !:!!||||||!!...!:!!|||!!:...!!.:!!!.! !! LeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValC 267281 : CTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTT : 267340 253 : erPheArgLysIleGlyValIleValGluArgHisLeuArgThrLeu{As} >>>> : 268 !!||| !||||||||||||:!!||||||!.!|||||||||..!|||{!:} ysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 267341 : GCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG}gt..... : 267392 269 : Target Intron 1 >>>> {n}PheIleSerCysIleGluAspValMetAsnArg : 279 69 bp {!}||||||:!! !!||||||..!||||||!:!..! ++{r}PheIleAlaArgIleGluSerValMetSerGlu 267393 : ....................ag{C}TTCATAGCACGTATCGAAAGTGTAATGAGCGAA : 267490 280 : IleTyrPheLeuGluMetPheArgCysThrMetAspIleCysValIleGlyTyrTyrI : 299 |||! !|||:!!|||:!!|||!:!|||||||||||||||||||||:!!.!!||||||| IleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSerTyrTyrI 267491 : ATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCTATTATA : 267550 300 : leLeuSer : 301 |||||!!! leLeuThr 267551 : TCCTTACG : 267558 vulgar: gi|350422508|ref|XP_003493185.1| 0 301 . KQ414889.1 266586 267558 + 977 M 267 801 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266587 267558 977 + . gene_id 3 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266587 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266587 267389 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267558 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267558 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266587 267558 977 + . alignment_id 3 ; Query gi|350422508|ref|XP_003493185.1| ; Align 266587 1 801 ; Align 267460 269 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 954 Query range: 12 -> 301 Target range: 274368 -> 275309 13 : AsnSerAsnSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyA : 32 :!!||| !||||||||||||||||||||||||||||||||||||||||||||||||| AspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyA 274369 : GACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCG : 274426 33 : laTrpProSerSerSerSerThrThrArgLeuGluLysIleValSerPheIleLeuAs : 51 ||||||||! !:!!||| !!||||||!:!!!!|||::!|||:!!||| !:::||| laTrpProLeuAlaSerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIl 274427 : CGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaat : 274483 52 : nIleIleCysPheThrSerValIleValThrAlaIleProSerLeuLeuLeuMetIle : 70 ...:::|||::! !! !:!!:!! !|||!.!|||||||||:!!!!!! !!!:||| ePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIlePheHisIleIle 274484 : cttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATA : 274540 71 : LeuGluAspGluSerIleTyrMetLysLeuLysThrLeuGlyProValSerHisTrpP : 90 |||! !|||||||||:!!:!!:!!||||||||| !|||||||||:!!.!!||||||| LeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpP 274541 : CTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGT : 274600 91 : heValSerSerAlaAsnTyrThrAlaLeuLeuIleArgGlyArgAspIleArgHisCy : 109 ||:!!.!!.!! !|||||||||.!!||||||:!!|||.!!!:!!!:|||||| !|| heIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCy 274601 : TCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTG : 274657 110 : sValGluHisIleGluAlaAspTrpArgThrValThrArgGluGluAspGlnHisVal : 128 ||||||||||!!::!!.!!|||||||||! !||||||||| !|||||||||!!.||| sValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnVal 274658 : CGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTG : 274714 129 : MetMetLysAsnAlaLysPheGlyArgTyrValAlaAlaSerCysAlaValPheMetG : 148 |||:!!||||||||||||.!!||||||||||||||| !! !||||||!.!||||||| MetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetG 274715 : ATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGC : 274774 149 : lnGlyGlyValLeuCysPheCysPheValThrAlaLeuThrThrThrGluIleGlnIl : 167 || !!||||||||||||!:!||| ! :!!||||||!!!|||! ! ! :!!|||:! lnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnVa 274775 : AATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGT : 274831 168 : eGlyAsnGluThrArgValLeuHisValLeuProCysAlaValTyrLysLysLeuVal : 186 !|||||||||||||||..!:!!|||:!!||||||||| !!.!|||||||||:!!||| lGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLysLysIleVal 274832 : AGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTC : 274888 187 : AsnValAspGluSerProAlaAsnGluIleMetLeuPheLeuGlnIleTrpAlaAlaL : 206 |||||| !||||||.!!|||||||||:!:||| !! !|||.!! !:!!!.!! AlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyP 274889 : GCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGAT : 274948 207 : euIleAlaAsnSerSerThrValGlyIlePheSerLeuAlaAlaValLeuAlaAlaHi : 225 !!|||!.!|||||||||.!!|||||| !||||||||||||||||||!!!|||||||| heIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHi 274949 : TTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACA : 275005 226 : sAlaCysGlyGlnLeuAspValIleMetMetTrpIleThrLysPheValLysGluAla : 244 ||||! !|||||||||..!|||:!:|||!!:|||||||||:!!||||||!!..!.:!! sAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheValAsnHisSer 275006 : CGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCC : 275062 245 : ArgGluGlnLysGluThrSerSerPheArgLysIleGlyValIleValGluArgHisL : 264 |||!!:|||...:::... ||| !:!!|||||||||:!!||||||!.!|||| ArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValValValGluHisHisL 275063 : AGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATC : 275122 265 : euArgThrLeu{As} >>>> Target Intron 1 >>>> {n}PheIleSerCy : 272 |||||..!|||{!:} 74 bp {!}||||||:!! ! euArgValLeu{Se}++ ++{r}PheIleAlaAr 275123 : TGAGGGTACTC{AG}gt.........................ag{T}TTCATAGCACG : 275220 273 : sIleGluAspValMetAsnArgIleTyrPheLeuGluMetPheArgCysThrMetAsp : 291 !||||||||||||||||||||||||! !|||:!!|||:!!|||!:!||||||:!!||| gIleGluAspValMetAsnArgIleCysPheMetGluLeuPheLysCysThrLeuAsp 275221 : TATCGAGGATGTGATGAATCGAATATGCTTCATGGAATTGTTCAAGTGTACTCTGGAT : 275277 292 : IleCysValIleGlyTyrTyrIleLeuSer : 301 !!:|||:!!:!!|||||||||||||||!!! MetCysMetLeuGlyTyrTyrIleLeuThr 275278 : ATGTGCATGCTTGGCTATTACATTCTCACG : 275309 vulgar: gi|350422508|ref|XP_003493185.1| 12 301 . KQ414889.1 274368 275309 + 954 M 255 765 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274369 275309 954 + . gene_id 4 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274369 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274369 275135 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275309 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275309 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274369 275309 954 + . alignment_id 4 ; Query gi|350422508|ref|XP_003493185.1| ; Align 274369 13 765 ; Align 275211 269 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 784 Query range: 12 -> 267 Target range: 262834 -> 263599 13 : AsnSerAsnSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyA : 32 ..!||| !||||||||||||||||||:!!|||||||||.!.|||||||||||||||| GlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyA 262835 : GGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTG : 262892 33 : laTrpProSerSerSerSerThrThrArgLeuGluLysIleValSerPheIleLeuAs : 51 |||||||| !|||:!!|||! !:!!|||:!!|||::!|||:!!!!!|||:!!|||! laTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIl 262893 : CATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAAT : 262949 52 : nIleIleCysPheThrSerValIleValThrAlaIleProSerLeuLeuLeuMetIle : 70 !:!!:!!|||!:! ! !:!!:!! !|||!.!|||||||||:!!|||! !!!::!! eValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeuHisIleVal 262950 : CGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTC : 263006 71 : LeuGluAspGluSerIleTyrMetLysLeuLysThrLeuGlyProValSerHisTrpP : 90 ||||||! !|||!:!.!!:!!|||||||||:!!..!|||||||||:!!.!!!!.|||| LeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpP 263007 : CTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGT : 263066 91 : heValSerSerAlaAsnTyrThrAlaLeuLeuIleArgGlyArgAspIleArgHisCy : 109 |||||.!!! ! !||||||||| !||||||:!!!.!.!!!:!||||||!:! !|| heValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCy 263067 : TCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTG : 263123 110 : sValGluHisIleGluAlaAspTrpArgThrValThrArgGluGluAspGlnHisVal : 128 ||||:!!|||:!::!!! !|||||| !!! !||||||||| !|||||||||!.!:!! sValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIle 263124 : CGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATC : 263180 129 : MetMetLysAsnAlaLysPheGlyArgTyrValAlaAlaSerCysAlaValPheMetG : 148 |||:!!||||||||||||!:!|||||||||||||||||||||||||||:!!||||||| MetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetG 263181 : ATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGC : 263240 149 : lnGlyGlyValLeuCysPheCysPheValThrAlaLeuThrThrThrGluIleGlnIl : 167 || !.!!:!!:!!||| |||.!.|||||||||!!!|||||| !! !|||:!! lnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAs 263241 : AAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGA : 263297 168 : eGlyAsnGluThrArgValLeuHisValLeuProCysAlaValTyrLysLysLeuVal : 186 !|||||||||||||||:!!|||!.!:!!||||||||| !!|||||||||:!!:!!:!! pGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLysGluIleIle 263298 : CGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATT : 263354 187 : AsnValAspGluSerProAlaAsnGluIleMetLeuPheLeuGlnIleTrpAlaAlaL : 206 |||||| !!:!|||.!!|||||||||.!.||| ! !|||.!! !:!!!.!! ProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyP 263355 : CCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTT : 263414 207 : euIleAlaAsnSerSerThrValGlyIlePheSerLeuAlaAlaValLeuAlaAlaHi : 225 !!|||!.!!.!:!!!!!||||||||| !|||.!!:!!.!!||||||!!!|||!.!|| heIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHi 263415 : TCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCA : 263471 226 : sAlaCysGlyGlnLeuAspValIleMetMetTrpIleThrLysPheValLysGluAla : 244 ||||||||||||||||:!!|||:!:||| |||||||||:!!||||||!!.:!!:!! sAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSer 263472 : TGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCC : 263528 245 : ArgGluGlnLysGluThrSerSerPheArgLysIleGlyValIleValGluArgHisL : 264 |||!!::!!!!.:!!!.! !! !|||! !:!!||||||||||||||||||!.!|||| ArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisL 263529 : AGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATC : 263588 265 : euArgThrLeu : 267 |||||..!||| euArgValLeu 263589 : TGAGAGTTCTG : 263599 vulgar: gi|350422508|ref|XP_003493185.1| 12 267 . KQ414889.1 262834 263599 + 784 M 255 765 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262835 263599 784 + . gene_id 5 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262835 263599 . + . KQ414889.1 exonerate:protein2genome:local exon 262835 263599 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262835 263599 784 + . alignment_id 5 ; Query gi|350422508|ref|XP_003493185.1| ; Align 262835 13 765 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 767 Query range: 10 -> 391 Target range: 232438 -> 235147 11 : AspSerAsnSerAsnSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI : 30 :!!:!!!.. !!:!!! !!!:||||||:!!|||:!!|||||||||||||||! !|||! AsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProM 232439 : AACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGA : 232496 31 : leGlyAlaTrpProSerSerSerSerThrThrArgLeuGluLysIleValSerPheIl : 49 !:|||||||||||| !! !!!!..!|||:!!||| !:!!:!!:!!:!!:!! :! etGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLe 232497 : TGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACT : 232553 50 : eLeuAsnIleIleCysPheThrSerValIleValThrAlaIleProSerLeuLeuLeu : 68 :|||!..:!!! !||| !:!! !:!!||| !:!! !:!!|||!!!:!!|||!!! uLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPhe 232554 : GTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTC : 232610 69 : MetIleLeuGluAspGluSerIleTyrMetLysLeuLysThrLeuGlyProValSerH : 88 !!::!:!!!|||||| !|||:!! ! !:!:!!|||:!!:!!||||||:!!|||| IleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerH 232611 : ATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTC : 232670 89 : isTrpPheValSerSerAlaAsnTyrThrAlaLeuLeuIleArgGlyArgAspIleAr : 107 ||!::.!.:!!.!!..! !|||||| !..!|||||| !!:!!.!!.!||||||! isPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLe 232671 : ACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCT : 232727 108 : gHisCysValGluHisIleGluAlaAspTrpArgThrValThrArgGluGluAspGln : 126 !:!!|||||||||!!.:!::!! !|||||||||!.!|||! !!:! ! !!!:: uTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArg 232728 : CTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGT : 232784 127 : HisValMetMetLysAsnAlaLysPheGlyArgTyrValAlaAlaSerCysAlaValP : 146 !!:!!|||:!!||||||||||||.!!||||||! :!!|||..!! !..!||| !!! AspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheC 232785 : GATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTT : 232844 147 : heMetGlnGlyGlyValLeuCysPheCysPheValThrAlaLeuThrThrThrGluIl : 165 !|||!!. !|||||| !! ! ! .!.||||||!.!||| !! !!:! !.! ysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPh 232845 : GCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTT : 232901 166 : eGlnIleGlyAsnGluThrArgValLeuHisValLeuProCysAlaValTyrLysLys : 184 ! ! :!:|||||||||!:! ! !:!!:!! !|||||||||.!! !!|||! !||| eTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLys 232902 : CTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAG : 232958 185 : LeuValAsnValAspGluSerProAlaAsnGluIleMetLeuPheLeuGlnIleTrpA : 204 |||:!!:!!..! ||||||.!!||||||||||||!!! !!|||||| ! : LeuMetAspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuS 232959 : CTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCT : 233018 205 : laAlaLeuIleAlaAsnSerSerThrValGlyIlePheSerLeuAlaAlaValLeuAl : 223 !!!.!!!!|||!.!|||||| !||||||||| !! !.!!|||!.!||||||||||| erGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAl 233019 : CCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGC : 233075 224 : aAlaHisAlaCysGlyGlnLeuAspValIleMetMetTrpIleThrLysPheValLys : 242 | !||||||||||||||||||:!!|||:!:||| ! :!: ! ! !!.||| aMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuVal--- 233076 : GATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTG--- : 233132 243 : GluAlaArgGluGlnLysGluThrSerSerPheArgLysIleGlyValIleValGluA : 262 !!:|||!:!! !|||:!!|||! ! !:!! ||||||:!!||| !!|||||||||! AspAlaLysGlyGlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluH 233133 : GACGCGAAAGGGCAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGC : 233189 263 : rgHisLeuArgThrLeuAsnPheIleSer >>>> Target Intron 1 >>>> : 272 .!|||||||||||||||!..!:!:!:||| 1493 bp isHisLeuArgThrLeuArgTyrLeuSer++ ++ 233190 : ATCATTTGCGTACATTAAGGTATTTGTCTgt.........................ag : 234710 273 : CysIleGluAspValMetAsnArgIleTyrPheLeuGluMetPheArgCysThrMetA : 291 ! |||..! :!!! !|||!:!:!!:!! :!!! ...::: ::: : LeuIleSerMetLeuThrAsnLysValHisGlyIleGlyThrLeuLysPheSerSerA 234711 : TTAATATCAATGTTAACGAACAAAGTACATGGGATCGGtacactgaaattttcatcga : 234769 292 : spIleCysValIleGlyTyr--TyrIleLeuSerGluTrpAlaAspArgAspIleGln : 309 ::... !|||! ! !|||## ! !:!!! ! ! !!!:!::... ::: snPheArgValThrLeuTyr##LysCysIleLeuThrSerGlnGluLysSerLysGlu 234770 : attttcgCGTAACTCTTTATGCAAATGTATTTTAACTTCTCAGGAAAAgtcgaaggaa : 234825 310 : AsnLeuPheThrTyrPheMetMetLeuIleSerIleCysPheAsnIlePheValIleC : 329 ...||| !:!!||| !!!!::!!! !:!:|||!!: ||||||||||||:::...| LysLeuAlaSerTyrValIleValTyrValSerMetThrPheAsnIlePheIlePheC 234826 : aaattagCTTCATACGTCATCGTGTACGTGTCCATGACATTtaatatattcatatttt : 234885 330 : ysTyrIleGlyGluIleLeuThrGluGln >>>> Target Intron 2 >>>> : 339 ||||||||||||||! |||||||||||| 74 bp ysTyrIleGlyGluThrLeuThrGluGln++ ++ 234886 : gttACATCGGAGAGACGCTTACAGAGCAGgt.........................ag : 234987 340 : CysGlnLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAspLysI : 358 ||| |||||||||||| !||||||||||||.!.|||||| |||||| !!|||! CysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProHisLysT 234988 : TGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATAAAA : 235046 359 : leIleLeuAspLeuIleLeuIleIleAlaArgSerSerMetValValHisIleThrAl : 377 ! !|||! !|||:!!:!!||||||:!!|||||||||||||||:!! ! |||||||| hrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAl 235047 : CTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCACCGC : 235103 378 : aGlyLysLeuValHisMetSerValTyrThrPheGlyAspVal : 391 |||||||!!!:!!!!.||||||||| ||||||||||||||| aGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235104 : TGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: gi|350422508|ref|XP_003493185.1| 10 391 . KQ414889.1 232438 235147 + 767 M 231 693 G 1 0 M 29 87 5 0 2 I 0 1489 3 0 2 M 26 78 F 0 2 M 41 123 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232439 235147 767 + . gene_id 6 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232439 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232439 233218 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233219 233220 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233219 234711 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234710 234711 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234712 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234712 234914 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232439 235147 767 + . alignment_id 6 ; Query gi|350422508|ref|XP_003493185.1| ; Align 232439 11 693 ; Align 233132 243 87 ; Align 234712 272 78 ; Align 234792 298 123 ; Align 234989 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 653 Query range: 16 -> 391 Target range: 212869 -> 215022 17 : AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerS : 36 ::: |||::: !! !|||||||||.!!|||||||||! ||| !||||||..!! AsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspL 212870 : aatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACA : 212927 37 : erSerSerThrThrArgLeuGluLysIleValSerPheIleLeuAsnIleIleCysPh : 55 .!|||! !..!:!!! !:!!||||||! !:!!:!! :!::!!|||! !:!!|||!: ysSerTyrValSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTy 212928 : AGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTA : 212984 56 : eThrSerValIleValThrAlaIleProSerLeuLeuLeuMetIleLeuGluAspGlu : 74 ! !! !:!! ! ! !!.!||||||!!! !|||! !:!!.!!|||!!:! ||| rGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGlu 212985 : CGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgag : 213041 75 : SerIleTyrMetLysLeuLysThrLeuGlyProValSerHisTrpPheValSerSerA : 94 :::|||::: ::::!!:!! !!!!||| ! !!:!! !!! ! !.!:!! ! AsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuT 213042 : aatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGT : 213101 95 : laAsnTyrThrAlaLeuLeuIleArgGlyArgAspIleArgHisCysValGluHisIl : 113 !!!.||| !:!!|||:!!:!!!.!||| !||||||||| ||||||||||||!! rpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMe 213102 : GGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATAT : 213158 114 : eGluAlaAspTrpArgThrValThrArgGluGluAspGlnHisValMetMetLysAsn : 132 ::!! !||||||!:!!.!:!!|||!.!|||||||||:!!.!.:!!||| ! !||| tLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsn 213159 : GAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAAC : 213215 133 : AlaLysPheGlyArgTyrValAlaAlaSerCysAlaValPheMetGlnGlyGlyValL : 152 |||!..||||||!:! :!!!.!.!!! !|||||| !!|||||| ! !||| !! AlaSerPheGlyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheT 213216 : GCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCA : 213275 153 : euCysPheCysPheValThrAlaLeuThrThrThrGluIleGlnIleGlyAsnGluTh : 171 !! !!:!! !.!!|||..! !!:!!!:!.!! !:!!!!: ! ! !:!! !. hrPheTyrPheLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAs 213276 : CGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAA : 213332 172 : rArgValLeuHisValLeuProCysAlaValTyrLysLysLeuValAsnValAspGlu : 190 ! !..!!!!... !:!! ! ! !!|||! !:! :!!|||:!!||| ! nValThrPheArgGlnMetValValProValSerArgPheIleValAspValArgTyr 213333 : CGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATAC : 213389 191 : SerProAlaAsnGluIleMetLeuPheLeuGlnIleTrpAlaAlaLeuIleAlaAsnS : 210 ||||||!.!|||||||||.!.!!!!!.:!!|||||| |||!.!:!!:!: !:!!: SerProValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisA 213390 : AGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATG : 213449 211 : erSerThrValGlyIlePheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGlyGl : 229 !!! !.!!|||! ! !! !|||||||||||||||!!!|||!.!|||||||||||||| laIleAlaValValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGl 213450 : CTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACA : 213506 230 : nLeuAspValIleMetMetTrpIleThrLysPheValLysGluAlaArgGluGlnLys : 248 |:!!! !:!!:!:|||! |||:!: ! ! !!.:!! !!:!.!||||||.!.! ! nMetGlyIleLeuMetSerTrpLeuGluHisLeuIle---AspGlyArgGluAspMet 213507 : GATGGGCATTTTGATGAGCTGGCTGGAACATTTGATA---GACGGTAGAGAGGATATG : 213560 249 : GluThrSerSerPheArgLysIleGlyValIleValGluArgHisLeuArgThrLeuA : 268 ...! !!:! ! ! !!:!|||!.!|||||||||.!.!:!|||:!!|||! !|||! SerLysAsnValAspAspArgIleAlaValIleValAsnGlnHisValArgIleLeuL 213561 : AGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTGA : 213620 269 : snPheIleSer >>>> Target Intron 1 >>>> CysIleGluAspValMet : 277 !.!:::!:..! 840 bp !:!:||| ! !.!:!: ysTrpValGlu-+ ++LeuValGluLysAlaLeu 213621 : AGTGGGTGGAAtt.........................agCTCGTGGAGAAAGCACTT : 214487 278 : AsnArgIleTyrPheLeuGluMetPheArgCysThrMetAspIleCysValIleGlyT : 297 ...!:!:!!! !||| !|||:!:!!. !||||||:!!:!!:!!|||:!!:!!|||| ArgGlnValSerPheAlaGluLeuLeuValCysThrValAsnLeuCysLeuValGlyT 214488 : CGGCAAGTATCTTTCGCTGAATTATTAGTATGCACGGTGAATCTCTGTCTCGTTGGAT : 214547 298 : yrTyrIleLeuSer >>>> Target Intron 2 >>>> GluTrpAlaAspArg : 306 ||||||||:!!!!! 68 bp |||||| !...!.! yrTyrIleIleThr++ ++GluTrpAsnSerAsn 214548 : ATTACATAATAACGgt.........................aggAATGGAATTCGAAC : 214642 307 : AspIleGlnAsnLeuPheThrTyrPheMetMetLeuIleSerIleCysPheAsnIleP : 326 :!!:!! !!.! ! ! |||||| ! :!!:!!! !||||||::: |||||||||| AsnLeuThrThrThrValThrTyrValValLeuTyrIleSerLeuThrPheAsnIleP 214643 : AATTTAACAACTACAGTAACTTACGTGGTGTTGTATATCTCTCtcactttcaatattt : 214702 327 : heValIleCysTyrIleGlyGluIleLeuThrGluGln >>>> Target Intron : 339 ||:::...|||||||||||||||:!!:!!:!!|||||| 123 bp heIlePheCysTyrIleGlyGluLeuValSerGluGln++ 214703 : tcatattttgttaCATAGGCGAGCTTGTGTCTGAACAGgt.................. : 214743 340 : 3 >>>> CysGlnLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuP : 355 |||:!!||||||||||||||| !||||||! !.!.|||||| |||| ++CysLysLysValGlyGluValSerTyrMetIleGluTrpTyrArgLeuP 214744 : .......agTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACCGATTGC : 214912 356 : roAspLysIleIleLeuAspLeuIleLeuIleIleAlaArgSerSerMetValValHi : 374 ||! !!!.! !! ||| !! !|||||||||!!:|||! !|||!:! !||| ! roGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSerValLy 214913 : CAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATCCGTCAA : 214969 375 : sIleThrAlaGlyLysLeuValHisMetSerValTyrThrPheGlyAspVal : 391 .!!|||||||||!!.:!!|||.!.:!!|||:!! !||||||.!!..!||| sPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214970 : ATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215022 vulgar: gi|350422508|ref|XP_003493185.1| 16 391 . KQ414889.1 212869 215022 + 653 M 225 675 G 1 0 M 29 87 5 0 2 I 0 836 3 0 2 M 30 90 5 0 2 I 0 64 3 0 2 M 37 111 5 0 2 I 0 119 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212870 215022 653 + . gene_id 7 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212870 213631 . + . KQ414889.1 exonerate:protein2genome:local exon 212870 213631 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 213632 213633 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 213632 214471 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214470 214471 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214472 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214472 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212870 215022 653 + . alignment_id 7 ; Query gi|350422508|ref|XP_003493185.1| ; Align 212870 17 675 ; Align 213545 243 87 ; Align 214472 272 90 ; Align 214630 302 111 ; Align 214864 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 624 Query range: 1 -> 286 Target range: 236804 -> 237653 2 : ThrAsnGluProValIleThrGluGlyAspSerAsnSerAsnSerAspTyrSerLeuG : 21 !.!:!!:!! !!|||:!!|||||| !:!!! !!.!:!!!:!|||||||||||||||| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuG 236805 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCC : 236862 22 : lnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerSerSerSerThrTh : 40 ||! !||||||||| :!!||| !||||||.!!||||||..!! !|||||| lnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSer----- 236863 : AGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCG----- : 236916 41 : rArgLeuGluLysIleValSerPheIleLeuAsnIleIleCysPheThrSerValIle : 59 !.!||||||!:!! !:!!||| |||||||||:!:||||||!:!|||:!!:!!:!! -AsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeu 236917 : -AACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTA : 236970 60 : ValThrAlaIleProSerLeuLeuLeuMetIleLeuGluAspGluSerIleTyrMetL : 79 !!:!! !||||||!!!! !|||! !:!:!!:|||||| ! ! !!!!.!!|||! !| PheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrL 236971 : TTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGA : 237030 80 : ysLeuLysThrLeuGlyProValSerHisTrpPheValSerSerAlaAsnTyrThrAl : 98 ||:!!|||! !|||||| !!:!!||||||||| ! !!!!!! ! !!:!|||||| ysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMe 237031 : AAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCAT : 237087 99 : aLeuLeuIleArgGlyArgAspIleArgHisCysValGluHisIleGluAlaAspTrp : 117 !||||||:!:||| !!!:! !|||||||||! ! !!.!.|||!!:|||.!!|||||| tLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrp 237088 : GCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGG : 237144 118 : ArgThrValThrArgGluGluAspGlnHisValMetMetLysAsnAlaLysPheGlyA : 137 ||||||..!||||||:::||| :::...||||||:!!||| !!|||||||||.!!| ArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerA 237145 : AGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTC : 237204 138 : rgTyrValAlaAlaSerCysAlaValPheMetGlnGlyGlyValLeuCysPheCysPh : 156 |||||!.!||| !||||||.!!:!!|||!!:!!.||||||:!!||| ! !:!||| ! rgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysVa 237205 : GATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGT : 237261 157 : eValThrAlaLeuThrThrThrGluIleGlnIleGlyAsnGluThrArgValLeuHis : 175 !:!!||||||! !||||||! !! :!! !:!!||||||:!!|||! !:!!|||!.! lMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLeuArg 237262 : TATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGC : 237318 176 : ValLeuProCysAlaValTyrLysLysLeuValAsnValAspGluSerProAlaAsnG : 195 |||||||||! !!:!!|||||| !|||:!! |||||| !!:! !! !|||! ValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnA 237319 : GTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACG : 237378 196 : luIleMetLeuPheLeuGlnIleTrpAlaAlaLeuIleAlaAsnSerSerThrValGl : 214 !:|||:!::!!!!.! !|||.!! :!!!.!!!!|||||||||!:!|||.!!:!!.! spIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSe 237379 : ACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAG : 237435 215 : yIlePheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGlyGlnLeuAspValIle : 233 !:!!.!.||||||.!!::!!.!|||.!!:!!||||||! !|||||||||..!|||:!! rValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValVal 237436 : TGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTT : 237492 234 : MetMetTrpIleThrLysPheValLysGluAlaArgGluGlnLysGluThrSerSerP : 253 |||:!!! !||| ! ! ||||||!..|||||||||...::! !:!! !..! !| MetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAspHisP 237493 : ATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATCATT : 237552 254 : heArgLysIleGlyValIleValGluArgHisLeuArgThrLeuAsnPheIleSerCy : 272 || !:!!||| !..!|||||||||..!|||||||||..!|||!!.! :!!!!!! heAspGluIleProThrIleValGluGluHisLeuArgValLeuLys***ValCysLe 237553 : TCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAGTATGTTT : 237609 273 : sIleGluAspValMetAsnArgIleTyrPheLeuGluMetPhe : 286 :!:!!: :!!:!! ! ! ! |||||| ! !||| uLeuAspLeuIleLeuLeuMetGlyValPheLeu***SerPhe 237610 : GTTGGATTTGATTTTGCTGATGGGTGTGTTTCTCTGATCGTTT : 237653 vulgar: gi|350422508|ref|XP_003493185.1| 1 286 . KQ414889.1 236804 237653 + 624 M 37 111 G 2 0 M 246 738 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236805 237653 624 + . gene_id 8 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236805 237653 . + . KQ414889.1 exonerate:protein2genome:local exon 236805 237653 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236805 237653 624 + . alignment_id 8 ; Query gi|350422508|ref|XP_003493185.1| ; Align 236805 2 111 ; Align 236916 41 738 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 623 Query range: 7 -> 401 Target range: 284493 -> 287252 8 : ThrGluGlyAspSerAsnSerAsnSerAspTyrSerLeuGlnLeuAsnArgTrpPheL : 27 |||!!:..! !!!:!!!!!:!!!!! ||||||:!!|||:!!||||||||||||| ThrAspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheL 284494 : ACCGATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTC : 284551 28 : euLysProIleGlyAlaTrpProSerSerSerSerThrThrArgLeuGluLysIleVa : 46 ||||||||||||||!.!|||||| !||| !!!!..!|||! !|||||||||||| euLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSe 284552 : TCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAG : 284608 47 : lSerPheIleLeuAsnIleIleCysPheThrSerValIleValThrAlaIleProSer : 65 !||| ! :!!||| :!!||| !!! ! ! !:!! ! !! ! !:!!|||!!! rSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCys 284609 : TTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGC : 284665 66 : LeuLeuLeuMetIleLeuGluAspGlu<->SerIleTyrMetLysLeuLysThrLeuG : 84 !|||! !! :!:|||!!: ! ..!:!! !!! !|||:!!|||! !:!!| AlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleG 284666 : GCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCG : 284725 85 : lyProValSerHisTrpPheValSerSerAlaAsnTyrThrAlaLeuLeuIleArgGl : 103 |||||:!!||| !!! .!.:!!:!!:!! !!!.||| ! !|||:!! ||||| lyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGl 284726 : GTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGG : 284782 104 : yArgAspIleArgHisCysValGluHisIleGluAlaAsp{Tr} >>>> Target : 117 | !! ! ||| !!!!.||||||:!! !!|||...||||||{||} 101 yGlyLysIleGlyGlnCysValLysAspIleArgAlaAsp{Tr}++ 284783 : CGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGAC{TG}gt............ : 284828 118 : Intron 1 >>>> {p}ArgThrValThrArgGluGluAspGlnHisValMetMetL : 131 2 bp {|}! !:!! !!:::::||||||::::::...:::|||! ! +-{p}LeuSerHisSerGlnGluGluGluArgGluIleMetArgA 284829 : .............ac{G}CTTTCGCATAGtcaagaagaggagagagagatcaTGAGGG : 285878 132 : ysAsnAlaLysPheGlyArgTyrValAlaAlaSerCysAlaValPheMetGlnGlyGl : 150 ! !:!|||!:!.!!||||||! !:!!||| !! !||||||! !|||||| ! ..!|| spSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGl 285879 : ACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGG : 285935 151 : yValLeuCysPheCysPheValThrAlaLeuThrThrThrGluIleGlnIleGlyAsn : 169 |! !!!!! !!:! ! |||! ! !!||| !|||..!...! :!!||| ! ! yGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIle---Ile 285936 : AGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATC---ATC : 285989 170 : GluThrArgValLeuHisValLeuProCysAlaValTyrLysLysLeuValAsnValA : 189 !!:!.!..!..!:!!... !! ! !!! ! !!:!!|||::: |||:!!:!! ! AspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProA 285990 : GACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGC : 286049 190 : spGluSerProAlaAsnGluIleMetLeuPheLeuGlnIleTrpAlaAlaLeuIleAl : 208 ! ||||||:!! !||||||:!!! !|||:!!||| !! !||||||!!!:!! rgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIl 286050 : GTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTAT : 286106 209 : aAsnSerSerThrValGlyIlePheSerLeuAlaAlaValLeuAlaAlaHisAlaCys : 227 ! !!||| !||||||||| !! !|||||||||||||||!!!!.! !|||!.!||| eTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCys 286107 : ATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGT : 286163 228 : GlyGlnLeuAspValIleMetMetTrpIleThrLysPheValLysGluAlaArgGluG : 247 ||||||!!! :!!:!!:!!! !:!: !|||.!!||| ! ! !!.!!:!! !: GlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLysGlyA 286164 : GGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGA : 286223 248 : lnLysGluThrSerSerPhe<->ArgLysIleGlyValIleValGluArgHisLeuAr : 265 :!|||! ! !|||!!! ! !:!::!:!:|||! !|||:!!|||!.!||||||!: rgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLy 286224 : GGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAA : 286280 266 : gThrLeu{As} >>>> Target Intron 2 >>>> {n}PheIleSerCysIle : 273 !! !|||{..} 408 bp {!}||||||||| ||| sIleLeu{Gl}++ ++{y}PheIleSerGlnIle 286281 : GATACTG{GG}gt.........................ag{T}TTTATATCGCAAATC : 286712 274 : GluAspValMetAsnArgIleTyrPheLeuGluMetPheArgCysThrMetAspIleC : 293 |||! :!!:!:|||..!|||! !|||:!!|||:!!.!! !!||||||:!!:!!|||| GluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsnIleC 286713 : GAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATAT : 286772 294 : ysValIleGlyTyrTyrIleLeuSer >>>> Target Intron 3 >>>> Glu : 302 || !!:!:|||||||||:!!|||!!! 80 bp ||| ysPheLeuGlyTyrTyrLeuLeuThr++ ++Glu 286773 : GCTTTTTGGGATATTATTTACTGACGgt.........................agGAA : 286879 303 : TrpAlaAspArgAspIleGlnAsnLeuPheThrTyrPheMetMetLeuIleSerIleC : 322 |||! !.!.!!!!!:! ! !... !.!!||||||! !! !:!!|||:!!|||.!! TrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerPheT 286880 : TGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCA : 286939 323 : ysPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluGln >>>> T : 339 ||||||:!!|||:!!:!!|||||||||||||||||||||:!!|||||| hrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286940 : CGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt...... : 286992 340 : arget Intron 4 >>>> CysGlnLysValGlyGluValValTyrMetThrAsnT : 351 74 bp ||| !||||||||| ! !..!||||||! !:!!| ++CysLeuLysValGlyLeuSerThrTyrMetIleAspT 286993 : ...................agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACT : 287100 352 : rpTyrTyrLeuProAspLysIleIleLeuAspLeuIleLeuIleIleAlaArgSerSe : 370 ||||| !||||||! |||! ! !! !! !||||||||||||.!!||| !|||!: rpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAs 287101 : GGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAA : 287157 371 : rMetValValHisIleThrAlaGlyLysLeuValHisMetSerValTyrThrPheGly : 389 ! !:!! ! :!!||||||||||||:!!:!! !!:!:|||:!! !!:!||| !! nSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCys 287158 : TTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGC : 287214 390 : AspValValLysThrGlyPheAlaTyrLeuAsnLeu : 401 ..!||| !! ! !..!!!.:!!|||! !:!!||| SerValSerIleIleAsnLeuSerTyrTyrHisLeu 287215 : AGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 287252 vulgar: gi|350422508|ref|XP_003493185.1| 7 401 . KQ414889.1 284493 287252 + 623 M 67 201 G 0 3 M 42 126 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 50 150 G 1 0 M 85 255 G 0 3 M 14 42 S 0 2 5 0 2 I 0 404 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284494 287252 623 + . gene_id 9 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284494 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284494 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286698 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 4 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 3 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284494 287252 623 + . alignment_id 9 ; Query gi|350422508|ref|XP_003493185.1| ; Align 284494 8 201 ; Align 284698 75 126 ; Align 285839 118 150 ; Align 285989 169 255 ; Align 286247 254 42 ; Align 286700 269 99 ; Align 286879 302 111 ; Align 287064 339 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 591 Query range: 7 -> 340 Target range: 217144 -> 219445 8 : ThrGluGlyAspSerAsnSerAsnSerAspTyrSerLeuGlnLeuAsnArgTrpPheL : 27 |||!!: !!!: ......||| ::: |||:!!|||! !|||||||||!!.| ThrAspTyrGluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuL 217145 : ACCGACTACGAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGT : 217202 28 : euLysProIleGlyAlaTrpProSerSerSerSerThrThrArgLeuGluLysIleVa : 46 ||||||||!!:||| !||||||!:!||| !!!!!|||||||||! !..!||||||:! euLysProMetGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLe 217203 : TGAAACCGATGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCT : 217259 47 : lSerPheIleLeuAsnIleIleCysPheThrSerValIleValThrAlaIleProSer : 65 !! ! :!::!!||| !:!!|||!:! !! !:!!! ! !! ! !:!!|||!!! uTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCys 217260 : CTACAAACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGC : 217316 66 : LeuLeuLeuMetIleLeuGluAspGluSerIleTyrMetLysLeuLysThrLeuGlyP : 85 ! !:!!! !:!!.!!||||||! !|||..!:!!||| ||||||||| !!!!|||| SerMetTyrValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyP 217317 : TCCATGTACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTC : 217376 86 : roValSerHisTrpPheValSerSerAlaAsnTyrThrAlaLeuLeuIleArgGlyAr : 104 ||:!!! ! !!! ! :!!:!!! !!.!!!.||| !:!!|||:!!:!!!.! ! roLeuIlePheCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAl 217377 : CGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGC : 217433 105 : gAspIleArgHisCysValGluHisIleGluAlaAspTrpArgThrValThrArgGlu : 123 !|||||||||.!.||||||..!...|||||| !|||||||||!.!|||! ! !!||| aAspIleArgGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGlu 217434 : GGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAG : 217490 124 : GluAspGlnHisValMetMetLysAsnAlaLysPheGlyArgTyrValAlaAlaSerC : 143 :!!|||::!.!.!.!|||!!: !||||||!!.||||||||| ! :!!!.! ! !| LysAspArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuC 217491 : AAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCT : 217550 144 : ysAlaValPheMetGlnGlyGlyValLeuCysPheCysPheValThrAlaLeuThrTh : 162 ||.!! !!|||||| ! .!!||| ::: ::: ..!!.!! ! !!:!!!:!.. ysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerVa 217551 : GTACCTTCTTCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGT : 217607 163 : rThrGluIleGlnIleGlyAsnGluThrArgValLeuHisValLeuProCysAlaVal : 181 ! !..!|||! ! ! !|||! !!.!! !..!!!! ! !||| !! ! !! !! lGlyArgIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPhe 217608 : GGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTT : 217664 182 : TyrLysLysLeuValAsnValAspGluSerProAlaAsnGluIleMetLeuPheLeuG : 201 ||| ! :!!:!!:!!..! ! ! !!!|||.!!|||||||||:!!!!!||||||| ThrLysTyrIleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuG 217665 : ACGAAGTATATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTC : 217724 202 : lnIleTrpAlaAlaLeuIleAlaAsnSerSerThrValGlyIlePheSerLeuAlaAl : 220 ||:!: |||!.! !:!: !:!!.!!! !||| !!.! !! !||||||||||| lnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAl 217725 : AATTGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGC : 217781 221 : aValLeuAlaAlaHisAlaCysGlyGlnLeuAspValIleMetMetTrpIleThrLys : 239 |!.!!!!|||!.!|||||||||||||||:!!!!:|||:!:|||! |||:!: ! ! aAlaPheAlaValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHis 217782 : AGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACAT : 217838 240 : PheValLysGluAlaArgGluGlnLysGluThrSerSerPheArgLysIleGlyValI : 259 !!.:!! ! ! ! !!!:..!!..!!:||| !..! !||| |||!.! !| LeuIleAspGlyArgAlaAspMetSerAspThrValAspGlyArg---IleAlaSerI 217839 : TTAATCGACGGTAGAGCGGATATGAGCGATACTGTGGATGGTAGA---ATCGCGAGCA : 217895 260 : leValGluArgHisLeuArgThrLeu{As} >>>> Target Intron 1 >>>> : 268 |||||...!:!|||:!!|||! !|||{!!} 1229 bp leValSerGlnHisValArgIleLeu{Ly}++ + 217896 : TCGTCAGTCAACACGTTCGGATATTA{AA}gt.........................a : 219151 269 : {n}PheIleSerCysIleGluAspValMetAsnArgIleTyrPheLeuGluMetPhe : 286 {.}|||::::!! !! !||| ..!:!:.!.!:!|||! !||| !|||.!..!. +{s}PheLeuThrLeuThrGluArgThrLeuGlnGlnIleSerPheAlaGluPheLeu 219152 : g{a}tttttgaCGCTCACAGAGAGAACCCTCCAGCAAATCTCTTTCGCTGAATTTCTA : 219205 287 : ArgCysThrMetAspIleCysValIleGlyTyrTyrIleLeuSer >>>> Target : 302 !!||||||||||||||||||:!!:!!||||||||||||:!! ! 7 GlyCysThrMetAspIleCysLeuValGlyTyrTyrIleIleVal++ 219206 : GGATGCACCATGGACATATGTCTCGTTGGATATTACATTATCGTGgt........... : 219255 303 : Intron 2 >>>> GluTrpAlaAspArgAspIleGlnAsnLeuPheThrTyrPhe : 315 6 bp |||||| !...!.!|||:!! !!:! ! ! ||||||.!! ++GluTrpLysSerAsnAspValThrSerAlaValThrTyrIle 219256 : ..............agGAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATC : 219368 316 : MetMetLeuIleSerIleCysPheAsnIlePheValIleCysTyrIleGlyGluIleL : 335 !!::!:|||||||||:!: ||||||||||||:::...||||||||||||||||||: IleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleV 219369 : ATTCTACTTATATCCCTcactttcaacattttcatattttgctaCATAGGAGAGATCG : 219428 336 : euThrGluGlnCysGln : 340 !!.!!|||||| ::: alAlaGluGlnValGlu 219429 : TTGCTGAACAggtagaa : 219445 vulgar: gi|350422508|ref|XP_003493185.1| 7 340 . KQ414889.1 217144 219445 + 591 M 247 741 G 1 0 M 12 36 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217145 219445 591 + . gene_id 10 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217145 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217145 217923 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219445 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219445 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217145 219445 591 + . alignment_id 10 ; Query gi|350422508|ref|XP_003493185.1| ; Align 217145 8 741 ; Align 217886 256 36 ; Align 219154 269 99 ; Align 219329 302 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 448 Query range: 7 -> 273 Target range: 221348 -> 222143 8 : ThrGluGlyAspSerAsnSerAsnSerAspTyrSerLeuGlnLeuAsnArgTrpPheL : 27 ..!||| !|||! !!!.!!!||| ! ! ! |||:!!||||||!:!||||||.!!| ValGluTyrAspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleL 221349 : GTTGAATACGATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCT : 221406 28 : euLysProIleGlyAlaTrpProSerSerSerSerThrThrArgLeuGluLysIleVa : 46 ||||||||||||||!.!||||||!:!|||:!!!:!! !:!!! !:!!|||!:! !:! euLysProIleGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLe 221407 : TGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCT : 221463 47 : lSerPheIleLeuAsnIleIleCysPheThrSerValIleValThrAlaIleProSer : 65 !! !!:::!::!!|||:!!:!!|||!:!!:! !:!!! !! ! !:!!|||!!! uTyrTrpLeuIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCys 221464 : CTACTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGC : 221520 66 : LeuLeuLeuMetIleLeuGluAspGluSerIleTyrMetLysLeuLysThrLeuGlyP : 85 !|||! !:!!|||||||||! |||..!:!!|||! !:!:!!||| !||||||| SerLeuTyrValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyP 221521 : AGCCTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTC : 221580 86 : roValSerHisTrpPheValSerSerAlaAsnTyrThrAlaLeuLeuIleArgGlyAr : 104 ||:!!||| !!! ! :!!:!!! ! !!!.||| ! !|||:!!:!! !! !!. roLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAs 221581 : CGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAA : 221637 105 : gAspIleArgHisCysValGluHisIleGluAlaAspTrpArgThrValThrArgGlu : 123 !|||||||||.!.|||:!!|||!.!|||||| !||||||!:!!.!:!!||| !... nAspIleArgGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSer 221638 : CGACATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCC : 221694 124 : GluAspGlnHisValMetMetLysAsnAlaLysPheGlyArgTyrValAlaAlaSerC : 143 :!!|||:!! !!:!!|||!!::!!||||||! ||||||||| :!! ! !! !| LysAspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleC 221695 : AAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCT : 221754 144 : ysAlaValPheMetGlnGlyGlyValLeuCysPheCysPheValThrAlaLeuThrTh : 162 ||.!! !!|||||| ! .!!||| ::: ::: ...!.!! ! !!!!!!:!.. ysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerVa 221755 : GCACATTTTTCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGT : 221811 163 : rThrGluIleGlnIleGlyAsnGluThrArgValLeuHisValLeuProCysAlaVal : 181 ! !:!!|||! !:!! ... ...... !:!! !! ! !! !! lGlyLysIleProAlaGlnAspValAsnValThrPheIleProMetValPheProPhe 221812 : GGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTC : 221868 182 : TyrLysLysLeuValAsnValAspGluSerProAlaAsnGluIleMetLeuPheLeuG : 201 ! !:! :!!|||:!!..! ! ||||||!.!|||||||||:!!!!!! |||| SerArgPheIleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuG 221869 : TCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTC : 221928 202 : lnIleTrpAlaAlaLeuIleAlaAsnSerSerThrValGlyIlePheSerLeuAlaAl : 220 ||||| !|||!.! !:!: !:!!|||! !||| !!.! !! !||||||!.!|| lnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAl 221929 : AAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGC : 221985 221 : aValLeuAlaAlaHisAlaCysGlyGlnLeuAspValIleMetMetTrpIleThrLys : 239 |:!!!!!|||!.!|||||||||||||||:!!.!.|||:!:|||! |||:!: ||| aMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeu---Lys 221986 : TATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTG---AAA : 222039 240 : PheValLysGluAlaArgGluGlnLysGluThrSerSerPheArgLysIleGlyValI : 259 !:!!! .!.!.!|||! !.!.! ! !.!!:! ! !|||!:!|||!.! !| HisLeuIleAsnGlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysI 222040 : CATTTGATCAACGGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGA : 222099 260 : leValGluArgHisLeuArgThrLeuAsnPheIleSerCysIle : 273 |||||.!.!:!|||:!!|||! !|||.!.!:!:!! !!|||||| leValAsnGlnHisValArgIleLeuGlnTyrValArgCysIle 222100 : TTGTGAATCAACACGTTCGAATATTGCAGTATGTACGTTGTATC : 222143 vulgar: gi|350422508|ref|XP_003493185.1| 7 273 . KQ414889.1 221348 222143 + 448 M 230 690 G 1 0 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221349 222143 448 + . gene_id 11 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221349 222143 . + . KQ414889.1 exonerate:protein2genome:local exon 221349 222143 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221349 222143 448 + . alignment_id 11 ; Query gi|350422508|ref|XP_003493185.1| ; Align 221349 8 690 ; Align 222039 239 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 422 Query range: 1 -> 272 Target range: 208164 -> 209570 2 : ThrAsnGluProValIleThrGluGlyAspSerAsnSerAsnSerAspTyrSerLeuG : 21 |||! ..!! !:!!.!! !.!. !!:!!! !!!.!:!:!! !..!!:!!:!:!!! ThrMetArgGlnIlePheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValA 208165 : ACGATGAGACAAATATTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTC : 208222 22 : lnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerSerSerSerThrTh : 40 ::|||||| !||| |||||| !||||||:!!||||||!!!|||! !..! !:! rgLeuAsnValTrpThrLeuLysIleIleGlySerTrpProArgSerIleAspArgSe 208223 : GTCTGAACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTC : 208279 41 : rArgLeuGluLysIleValSerPheIleLeuAsnIleIleCysPheThrSerValIle : 59 ! !!||||||!!.! ! ! !.!!:!!||||||:!!:!! !! ! !! !:!! ! rTrpLeuGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGly 208280 : CTGGTTAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGT : 208336 60 : ValThrAlaIleProSerLeuLeuLeuMetIleLeuGluAspGluSerIleTyrMetL : 79 !!! !!.!||||||!!! !:!!!!! !||||||! !! !|||..!.!!||| : PheIleValIleProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspG 208337 : TTCATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACC : 208396 80 : ysLeuLysThrLeuGlyProValSerHisTrpPheValSerSerAlaAsnTyrThrAl : 98 !!||||||! !! !.!! !!:!!||| !!::.!.:!!:!!! !.!!!!.|||..! lnLeuLysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIl 208397 : AATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGAT : 208453 99 : aLeuLeuIleArgGlyArgAspIleArgHisCysValGluHisIleGluAlaAspTrp : 117 !:!! !:!!|||! ! !!||||||||| ! |||||||||:!!:!!|||||||||||| eMetThrValArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrp 208454 : CATGACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGG : 208510 118 : ArgThrValThrArgGluGluAspGlnHisValMetMetLysAsnAlaLysPheGlyA : 137 |||!.!||| !!.!|||||||||::! ! :!!|||:!! ! ||||||!..|||!.!| ArgAsnValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaA 208511 : AGAAACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCA : 208570 138 : rgTyrValAlaAlaSerCysAlaValPheMetGlnGlyGlyValLeuCysPheCysPh : 156 || ! :!! !!.!! !|||!.!!.!|||||| ! |||||||||::: ::: .! rgLysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIl 208571 : GGAAACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaT : 208627 157 : eValThrAlaLeuThrThrThrGluIleGlnIleGlyAsnGluThrArgValLeuHis : 175 !!.! ! !!|||||| ! !:!!:!! ! !..!! !.! !..!! !... eAlaLeuProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArg 208628 : CGCTTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGA : 208684 176 : ValLeuProCysAlaValTyrLysLysLeuValAsnValAspGluSerProAlaAsnG : 195 !||| !! ! !!||| !||| :!!:!!:!!||| ! ||||||!.!|||| ArgLeuValTyrProValProLysPheIleLeuAspValArgTyrSerProValAsnG 208685 : AGGCTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATG : 208744 196 : luIleMetLeuPheLeuGlnIleTrpAlaAlaLeuIleAlaAsnSerSerThrValGl : 214 |||||.!.! ! :!!|||:!:! !:!!!.!!!!:!!|||:!!!:!! !|||||||| luIlePheTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGl 208745 : AGATTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGG : 208801 215 : yIlePheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGlyGlnLeuAspValIle : 233 | !! !.!!|||||||||:!!|||||| !||||||||||||||||||.!.:!!:!: yAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeu 208802 : GGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTG : 208858 234 : MetMetTrpIleThrLysPheValLysGluAlaArgGluGlnLysGluThrSerSerP : 253 ||| |||!!: !|||!!.||| !!:!.!||||||.!.:!!|||! !!:!! ! MetSerTrpMetGluLysLeuVal---AspGlyArgGluAspGluGluLysAsnLeuA 208859 : ATGTCCTGGATGGAGAAGTTGGTC---GATGGACGGGAGGACGAGGAGAAGAATTTGG : 208915 254 : heArgLysIleGlyValIleValGluArgHisLeuArgThrLeu{As} >>>> Tar : 268 !!:!!:!:!:!.! !|||||||||!:!|||:!!|||..!:!!{||} spGlnArgLeuAlaAsnIleValGluGlnHisValArgValIle{As}++ 208916 : ATCAGAGGTTGGCTAATATCGTGGAGCAGCATGTTCGAGTGATC{AA}gt........ : 208964 269 : get Intron 1 >>>> {n}PheIleSerCys : 272 596 bp {|}|||||||||||| +-{n}PheIleSerCys 208965 : .................aa{t}tttatttcttgt : 209570 vulgar: gi|350422508|ref|XP_003493185.1| 1 272 . KQ414889.1 208164 209570 + 422 M 240 720 G 1 0 M 25 75 S 0 2 5 0 2 I 0 592 3 0 2 S 1 1 M 4 12 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208165 209570 422 + . gene_id 12 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208165 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208165 208961 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 209557 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 209556 209557 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 209558 209570 . + . KQ414889.1 exonerate:protein2genome:local exon 209558 209570 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208165 209570 422 + . alignment_id 12 ; Query gi|350422508|ref|XP_003493185.1| ; Align 208165 2 720 ; Align 208885 243 75 ; Align 209559 269 12 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 415 Query range: 301 -> 406 Target range: 277371 -> 277842 302 : GluTrpAlaAspArgAspIleGlnAsnLeuPheThrTyrPheMetMetLeuIleSerI : 321 ||||||:!!|||!!!|||:!!|||!..:!! !|||:!!||||||!!:|||||||||! GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 322 : leCysPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluGln >>> : 339 !:|||||||||||||||..!:!!|||||||||||||||||||||||||||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 340 : > Target Intron 1 >>>> CysGlnLysValGlyGluValValTyrMetThrA : 350 72 bp |||:!!|||||||||||||||||||||||||||| ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 351 : snTrpTyrTyrLeuProAspLysIleIleLeuAspLeuIleLeuIleIleAlaArgSe : 369 ||||||||||||||||||||||| !||||||:!!|||:!!|||||||||:!!||||| snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 370 : rSerMetValValHisIleThrAlaGlyLysLeuValHisMetSerValTyrThrPhe : 388 ||||:::|||::: ||||||||||||||||||:::...|||||||||||||||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 389 : GlyAsp >>>> Target Intron 2 >>>> ValValLysThrGlyPheAlaTy : 398 |||||| 84 bp |||:!!|||||| !|||||||| GlyAsp++ ++ValIleLysThrThrPheAlaTy 277703 : GGCGATgt.........................agGTAATAAAAACCACTTTCgcgta : 277816 399 : rLeuAsnLeuLeuArgGlnMetThr : 406 |||||||:::|||||||||! !||| rLeuAsnIleLeuArgGlnThrThr 277817 : tttaaatattctacgCCAAACGACG : 277842 vulgar: gi|350422508|ref|XP_003493185.1| 301 406 . KQ414889.1 277371 277842 + 415 M 37 111 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277842 415 + . gene_id 13 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277842 415 + . alignment_id 13 ; Query gi|350422508|ref|XP_003493185.1| ; Align 277372 302 111 ; Align 277555 339 156 ; Align 277795 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 394 Query range: 5 -> 273 Target range: 226894 -> 227695 6 : ValIleThrGluGlyAspSerAsnSerAsnSerAspTyrSerLeuGlnLeuAsnArgT : 25 :!! ||||||..!|||! !.!...! !!! !:!! |||:!!||||||||||||| LeuAlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgT 226895 : CTCGCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTT : 226952 26 : rpPheLeuLysProIleGlyAlaTrpProSerSerSerSerThrThrArgLeuGluLy : 44 ||.!.|||||||||:!!||| !|||||||||||| !!!.!!:!:!!|||:!!! !!: rpLeuLeuLysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGlyAr 226953 : GGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAG : 227009 45 : sIleValSerPheIleLeuAsnIleIleCysPheThrSerValIleValThrAlaIle : 63 ! ! !!|||!:::!::!!..!.!!:!!|||!:!.!! !:!!! ! !! ! !:!! gCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuVal 227010 : ATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTC : 227066 64 : ProSerLeuLeuLeuMetIleLeuGluAspGluSerIleTyrMetLysLeuLysThrL : 83 !!||| !|||! !:!!:!!||||||! :!!.!! !|||! ! !||||||! !: SerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetI 227067 : TCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGA : 227126 84 : euGlyProValSerHisTrpPheValSerSerAlaAsnTyrThrAlaLeuLeuIleAr : 102 !!||||||:!!||| !!:: :!!||| ! !!!.|||:!! !||| !.!!!. leGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHi 227127 : TCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCA : 227183 103 : gGlyArgAspIleArgHisCysValGluHisIleGluAlaAspTrpArgThrValThr : 121 !! ! !||||||! !.!.|||||||||!..|||:!! !||||||!:!!.!:!!! ! sGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArg 227184 : CGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGA : 227240 122 : ArgGluGluAspGlnHisValMetMetLysAsnAlaLysPheGlyArgTyrValAlaA : 141 ! !||||||::!:!!||||||:!!! ! !!||| ! !:!|||||| ! :!! !. TyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleT 227241 : TACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCA : 227300 142 : laSerCysAlaValPheMetGlnGlyGlyValLeuCysPheCysPheValThrAlaLe : 160 !!! !|||.!! !!|||:!: ...... ::: ||| .!!|||..! !!:! hrIleCysThrPhePheValPheSerSerPheValPhePheTyrIleValValProIl 227301 : CTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTAT : 227357 161 : uThrThrThrGluIleGlnIleGlyAsnGluThrArgValLeuHisValLeuProCys : 179 !!.!.!! !...:!! !! ! !:!!! !!.!!.! !! ! ! !:!!|||! ! eAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPhe 227358 : CAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTT : 227414 180 : AlaValTyrLysLysLeuValAsnValAspGluSerProAlaAsnGluIleMetLeuP : 199 !! !! |||! :!!!.!:!!||| ! ! |||||| !|||||||||.!.!!!! ProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheS 227415 : CCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTT : 227474 200 : heLeuGlnIleTrpAlaAlaLeuIleAlaAsnSerSerThrValGlyIlePheSerLe : 218 :!!|||.!! .!!!.!:!!:!: !:!!.!! !||| !!.! !! !|||:! erValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMe 227475 : CGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTAT : 227531 219 : uAlaAlaValLeuAlaAlaHisAlaCysGlyGlnLeuAspValIleMetMetTrpIle : 237 !||||||:!!||||||!.!|||||||||||||||:!!!!:|||:!::!! |||:!: tAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeu 227532 : GGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTG : 227588 238 : ThrLysPheValLysGluAlaArgGluGlnLysGluThrSerSerPheArgLysIleG : 257 ! ! !!.:!! ! ! ! !!!:..!!..:!!||| !..! !||| |||! GlyHisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAspAspArg---IleA 227589 : GGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGATGATAGA---ATCG : 227645 258 : lyValIleValGluArgHisLeuArgThrLeuAsnPheIleSerCysIle : 273 .! !|||||| !.!|||:!!|||! !|||!!.! !:!!!!!|||||| laSerIleValThrHisHisValArgIleLeuLysCysValThrCysIle 227646 : CTAGCATCGTCACTCACCACGTTCGAATATTGAAGTGTGTAACGTGTATC : 227695 vulgar: gi|350422508|ref|XP_003493185.1| 5 273 . KQ414889.1 226894 227695 + 394 M 249 747 G 1 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226895 227695 394 + . gene_id 14 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226895 227695 . + . KQ414889.1 exonerate:protein2genome:local exon 226895 227695 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226895 227695 394 + . alignment_id 14 ; Query gi|350422508|ref|XP_003493185.1| ; Align 226895 6 747 ; Align 227642 256 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 382 Query range: 301 -> 406 Target range: 272836 -> 273302 302 : GluTrpAlaAspArgAspIleGlnAsnLeuPheThrTyrPheMetMetLeuIleSerI : 321 ||||||.!!|||!.!|||.!!|||!:!||| !||||||||||||!!:|||||||||! GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 322 : leCysPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluGln >>> : 339 !: ||||||||||||:::::!|||||||||||||||||||||||||||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 340 : > Target Intron 1 >>>> CysGlnLysValGlyGluValValTyrMetThrA : 350 70 bp |||:::|||:::|||||||||||||||||||||| ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 351 : snTrpTyrTyrLeuProAspLysIleIleLeuAspLeuIleLeuIleIleAlaArgSe : 369 |||||||||||||||||! !||| !||||||||||||||||||||||||:!!|||!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 370 : rSerMetValValHisIleThrAlaGlyLysLeuValHisMetSerValTyrThrPhe : 388 !|||:!:|||:!! ! ||||||||||||!:!:!!|||! !|||||||||||||||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 389 : GlyAsp >>>> Target Intron 2 >>>> ValValLysThrGlyPheAlaTy : 398 |||||| 81 bp |||:!!|||!:!!.!|||||||| GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 399 : rLeuAsnLeuLeuArgGlnMetThr : 406 |||||||:!!|||||||||! !||| rLeuAsnMetLeuArgGlnThrThr 273277 : CTTAAATATGCTACGACAAACGACA : 273302 vulgar: gi|350422508|ref|XP_003493185.1| 301 406 . KQ414889.1 272836 273302 + 382 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273302 382 + . gene_id 15 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273302 382 + . alignment_id 15 ; Query gi|350422508|ref|XP_003493185.1| ; Align 272837 302 111 ; Align 273018 339 156 ; Align 273255 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 375 Query range: 282 -> 406 Target range: 243547 -> 244951 283 : LeuGluMetPheArgCysThrMetAspIleCysValIleGlyTyrTyrIleLeuSer : 302 |||!!:.!.! ! !... !:!:||| ! !:!!:!!||||||||||||!!!! ! LeuAspPheCysTyrAlaTyrLeuAspAspIleLeuValGlyTyrTyrIlePheMet+ 243548 : CTCGATTTCTGTTACGCGTATCTAGACGATATTCTAGTTGGATATTATATATTCATGg : 243605 303 : >>>> Target Intron 1 >>>> GluTrpAlaAspArgAspIleGlnAsnLeu : 311 837 bp |||||||||!!:!!!||| !:!!! !||| + ++GluTrpAlaGluSerAspAlaLysIleLeu 243606 : t.........................agGAATGGGCAGAGAGCGATGCTAAAATCTTA : 244469 312 : PheThrTyrPheMetMetLeuIleSerIleCysPheAsnIlePheValIleCysTyrI : 331 .!!|||||||||!!: |||:!!:!!||| !! !|||! !|||:!!:!!||||||| IleThrTyrPheIleAlaLeuValAlaIleValSerAsnThrPheIleLeuCysTyrI 244470 : ATCACGTACTTTATAGCACTCGTTGCTATTGTTTCTAATACATTTATACTCTGTTATA : 244529 332 : leGlyGluIleLeuThrGluGln >>>> Target Intron 2 >>>> CysGln : 340 ||.!!!!:! |||||||||||| 106 bp ||| ! leSerAspArgLeuThrGluGln++ ++CysLeu 244530 : TCAGCGACAGGCTGACAGAACAGgt.........................agTGCTTG : 244662 341 : LysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAspLysIleIleL : 360 |||||||||||||||||||||||||||:!!|||||||||||||||.!.!:!! !|||| LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 244663 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 244722 361 : euAspLeuIleLeuIleIleAlaArgSerSerMetValValHisIleThrAlaGlyLy : 379 |||||||||||||||||||| !||||||!:!|||||||||.!.|||||||||||||| euAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleThrAlaGlyLy 244723 : TCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCACCGCTGGAAA : 244779 380 : sLeuValHisMetSerValTyrThrPheGlyAsp >>>> Target Intron 3 > : 391 |:!!:!!|||||||||:!!||||||||||||||| 89 bp sValLeuHisMetSerLeuTyrThrPheGlyAsp++ 244780 : AGTATTACATATGTCGCTTTACACGTTCGGCGATgt...................... : 244817 392 : >>> ValValLysThrGlyPheAlaTyrLeuAsnLeuLeuArgGlnMetThr : 406 ||||||||||||||||||||||||||||||:!!||| !!||||||:!! ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMetSer 244818 : ...agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAAATGTCC : 244951 vulgar: gi|350422508|ref|XP_003493185.1| 282 406 . KQ414889.1 243547 244951 + 375 M 19 57 5 0 2 I 0 833 3 0 2 M 37 111 5 0 2 I 0 102 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 243548 244951 375 + . gene_id 16 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 243548 243604 . + . KQ414889.1 exonerate:protein2genome:local exon 243548 243604 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 243605 243606 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 243605 244441 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244440 244441 . + . intron_id 0 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 244442 244552 . + . KQ414889.1 exonerate:protein2genome:local exon 244442 244552 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244553 244554 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244553 244658 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 244657 244658 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244659 244814 . + . KQ414889.1 exonerate:protein2genome:local exon 244659 244814 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244815 244816 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244815 244903 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 244902 244903 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244904 244951 . + . KQ414889.1 exonerate:protein2genome:local exon 244904 244951 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 243548 244951 375 + . alignment_id 16 ; Query gi|350422508|ref|XP_003493185.1| ; Align 243548 283 57 ; Align 244442 302 111 ; Align 244659 339 156 ; Align 244904 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 326 Query range: 7 -> 267 Target range: 278546 -> 279338 8 : ThrGluGlyAspSerAsnSerAsnSerAspTyrSerLeuGlnLeuAsnArgTrpPheL : 27 |||!!:..! !!!|||!!!:!!!!! ||||||:!!|||:!!||||||||||||| ThrAspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheL 278547 : ACCGATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTC : 278604 28 : euLysProIleGlyAlaTrpProSerSerSerSerThrThrArgLeuGluLysIleVa : 46 ||||||||||||||!.!|||||| !||| !!!!..!|||! !|||||||||||| euLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSe 278605 : TCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAG : 278661 47 : lSerPheIleLeuAsnIleIleCysPheThrSerValIleValThrAlaIleProSer : 65 !||| ! :!!||| :!!||| !!! ! ! !:!! ! !! ! !:!!|||!!! rSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCys 278662 : TTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGC : 278718 66 : LeuLeuLeuMetIleLeuGluAspGlu<->SerIleTyrMetLysLeuLysThrLeuG : 84 !|||! !! :!:|||!!: ! ..!:!! !!! !|||:!!|||! !:!!| AlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleG 278719 : GCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCG : 278778 85 : lyProValSerHisTrpPheValSerSerAlaAsnTyrThrAlaLeuLeuIleArgGl : 103 |||||:!!||| !!! :!!:!!!!! !!!.||| ! !|||:!! ||||| lyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGl 278779 : GTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGG : 278835 104 : yArgAspIleArgHisCysValGluHisIleGluAlaAspTrpArg<-><-><->Thr : 119 | !! ! ||| !! ! ||||||.!. !!|||....!!|||||| ! :!! yGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSer 278836 : CGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCG : 278892 120 : ValThrArgGluGluAspGlnHisValMetMetLysAsnAlaLysPheGlyArgTyrV : 139 ! :::||||||::::::...:::|||! ! ! !:!|||!:!.!!||||||! !: TyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerL 278893 : TATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTT : 278952 140 : alAlaAlaSerCysAlaValPheMetGlnGlyGlyValLeuCysPheCysPheValTh : 158 !!||| !! ! !!|||! !|||||| ! ..!|||! !:!!! !!:! ! !|||! euAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMe 278953 : TGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGAT : 279009 159 : rAlaLeuThrThrThrGluIleGlnIleGlyAsnGluThrArgValLeuHisValLeu : 177 ! !!||| !.!!..!...! :!!||| ! !!!:!.!..!..!:!!... !! ! tProLeuPheAlaValArgThrGluIle---IleAspAsnGluThrValArgSerGln 279010 : GCCGTTGTTCGCAGTACGCACGGAGATC---ATCGACAATGAAACGGTGAGATCTCAA : 279063 178 : ProCysAlaValTyrLysLysLeuValAsnValAspGluSerProAlaAsnGluIleM : 197 !!! ! !!:!!|||::: |||:!!:!! ! ! ||||||:!! !||||||: AlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleV 279064 : GCGTTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCG : 279123 198 : etLeuPheLeuGlnIleTrpAlaAlaLeuIleAlaAsnSerSerThrValGlyIlePh : 216 !!! !|||:!!||| !! !||||||!!!:!! ! !!||| !||||||||| !! alGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCy 279124 : TGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTG : 279180 217 : eSerLeuAlaAlaValLeuAlaAlaHisAlaCysGlyGlnLeuAspValIleMetMet : 235 !|||||| !||||||!!!!.! !|||!.!|||||||||!!! :!!:!!:!!! sSerLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThr 279181 : CAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACA : 279237 236 : TrpIleThrLysPheValLysGluAlaArgGluGlnLysGluThrSerSerPhe<->A : 254 !:!: !|||.!!:!! ! ! !!.!!:!! !::!|||... !|||!!! ! ! LysLeuAspLysLeuIleAspGlyValLysGlyArgLysSerLeuSerThrHisGluG 279238 : AAGCTGGATAAGCTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAAC : 279297 255 : rgLysIleGlyValIleValGluArgHisLeuArgThrLeu : 267 :!::!:!:|||! !|||:!!|||!.!||||||!:!! !||| lnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu 279298 : AACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG : 279338 vulgar: gi|350422508|ref|XP_003493185.1| 7 267 . KQ414889.1 278546 279338 + 326 M 67 201 G 0 3 M 44 132 G 0 9 M 49 147 G 1 0 M 85 255 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278547 279338 326 + . gene_id 17 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278547 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278547 279338 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278547 279338 326 + . alignment_id 17 ; Query gi|350422508|ref|XP_003493185.1| ; Align 278547 8 201 ; Align 278751 75 132 ; Align 278892 119 147 ; Align 279039 169 255 ; Align 279297 254 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 318 Query range: 301 -> 391 Target range: 283096 -> 283438 302 : GluTrpAlaAspArgAspIleGlnAsnLeuPheThrTyrPheMetMetLeuIleSerI : 321 ||||||:!!||| !!|||:!!|||!.!:!! !|||:!!||||||!!:|||||||||! GluTrpSerAspGlyAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 283097 : GAATGGTCTGACGGCGATGTTCAGACTATGACTACGCATTTCATGATCCTTATATCCA : 283154 322 : leCysPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluGln >>> : 339 !:|||||||||||||||..!:!!! !|||||||||:!!||||||||||||||| etCysPheAsnIlePheThrValTyrTyrIleGlyLysIleLeuThrGluGln++ 283155 : TgtgtttcaacatttttacAGTATACTATATCGGGAAAATACTAACTGAACAGgt... : 283210 340 : > Target Intron 1 >>>> CysGlnLysValGlyGluValValTyrMetThrA : 350 72 bp |||:!!|||||||||||||||||||||||||||| ++CysLysLysValGlyGluValValTyrMetThrA 283211 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 283313 351 : snTrpTyrTyrLeuProAspLysIleIleLeuAspLeuIleLeuIleIleAlaArgSe : 369 ||! !!:!||||||||||||||| !||||||:!!|||:!!|||||||||:!!||||| sn***PheTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 283314 : ATTAGTTTTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 283370 370 : rSerMetValValHisIleThrAlaGlyLysLeuValHisMetSerValTyrThrPhe : 388 ||||:::|||::: |||||||||...||||||:::...||||||!.!||||||||| rSerLeuValIleLysIleThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPhe 283371 : TAGCctggtaattaaaattaccgctagcaaattaattcaaatGTCCGCGTACACGTTC : 283427 389 : GlyAspVal : 391 ! !|||||| AspAspVal 283428 : GACGATGTA : 283438 vulgar: gi|350422508|ref|XP_003493185.1| 301 391 . KQ414889.1 283096 283438 + 318 M 37 111 5 0 2 I 0 68 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283097 283438 318 + . gene_id 18 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 283097 283207 . + . KQ414889.1 exonerate:protein2genome:local exon 283097 283207 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 283208 283209 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 283208 283279 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 283278 283279 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 283280 283438 . + . KQ414889.1 exonerate:protein2genome:local exon 283280 283438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283097 283438 318 + . alignment_id 18 ; Query gi|350422508|ref|XP_003493185.1| ; Align 283097 302 111 ; Align 283280 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 304 Query range: 301 -> 394 Target range: 254071 -> 254442 302 : GluTrpAlaAspArgAspIleGlnAsnLeuPheThrTyrPheMetMetLeuIleSerI : 321 ||||||.!!!!:!!!||| !|||! ||||||||||||.!!:!:! |||:!!:!!: GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaV 254072 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTG : 254129 322 : leCysPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluGln >>> : 339 !! ! ||| |||:::||||||||||||.!!!!:! |||||||||||| alValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 254130 : TTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt... : 254185 340 : > Target Intron 1 >>>> CysGlnLysValGlyGluValValTyrMetThrA : 350 92 bp ||| !|||||||||||||||||||||||||||: ++CysLeuLysValGlyGluValValTyrMetThrA 254186 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 254308 351 : snTrpTyrTyrLeuProAspLysIleIleLeuAspLeuIleLeuIleIleAlaArgSe : 369 !!|||||||||||||||.!.!:!! !||||||||||||||||||||||||.!!||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSe 254309 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATC : 254365 370 : rSerMetValValHisIleThrAlaGlyLysLeuValHisMetSerValTyrThrPhe : 388 |!:!:!!||||||.!.|||||||||||||||::: |||||||||:!!||||||||| rAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPhe 254366 : GAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTC : 254422 389 : GlyAspValValLysThr : 394 ||||||||| !:!!||| GlyAspValSerGluThr 254423 : GGCGATGTAAGTGAAACT : 254442 vulgar: gi|350422508|ref|XP_003493185.1| 301 394 . KQ414889.1 254071 254442 + 304 M 37 111 5 0 2 I 0 88 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254072 254442 304 + . gene_id 19 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254072 254182 . + . KQ414889.1 exonerate:protein2genome:local exon 254072 254182 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254183 254184 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254183 254274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254273 254274 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254275 254442 . + . KQ414889.1 exonerate:protein2genome:local exon 254275 254442 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254072 254442 304 + . alignment_id 19 ; Query gi|350422508|ref|XP_003493185.1| ; Align 254072 302 111 ; Align 254275 339 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 279 Query range: 181 -> 406 Target range: 300222 -> 302163 182 : TyrLysLysLeuValAsnValAspGluSerProAlaAsnGluIleMetLeuPheLeuG : 201 ||| ! !!!!:!!:!!..!.!. ||||||.!! !!||||||:::...|||.... TyrAspTrpPheIleAspThrGlnThrSerProThrTyrGluIleValPhePhePheH 300223 : TACGATTGGTTTATCGATACACAAACCAGTCCTACCTACGAgatcgtatttttctttc : 300280 202 : lnIleTrpAlaAlaLeuIleAlaAsnSerSerThrValGlyIlePheSerLeuAlaAl : 220 .. :::||||||:!!||| ! !!!:! !|||..!!.! !:!||||||||||| isCysPheAlaAlaMetIleMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAl 300281 : actgttTCGCAGCGATGATCATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGC : 300337 221 : aValLeuAlaAlaHisAlaCysGlyGlnLeuAspValIleMetMetTrpIleThrLys : 239 |:!!!!!!.!.!!||| !|||||||||:!!.!.:!! ||| ! ! :!: ! ! aIlePheValThrHisIleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAsp 300338 : GATATTCGTCACTCATATCTGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGAT : 300394 240 : PheValLysGluAlaArgGluGlnLysGluThrSerSerPheArgLysIleGlyValI : 259 .!.|||:!!..!.!! !!|||:!! ! !!: ! !!..! :!:! !|||| LeuValGluArgThrGlyGluLysAspAspGlyProAsp------ProLeuValValI 300395 : CTGGTGGAGAGGACGGGAGAGAAGGACGACGGTCCTGAT------CCTTTGGTCGTTA : 300448 260 : leValGluArgHisLeuArgThrLeu{As} >>>> Target Intron 1 >>>> : 268 |||||..! !|||:!!!:!..!|||{!.} 1110 bp leValArgAspHisValLysValLeu{Ar}++ + 300449 : TCGTTCGAGATCACGTGAAGGTTTTA{AG}gt.........................a : 301585 269 : {n}PheIleSerCysIleGluAspValMetAsnArgIleTyrPheLeuGluMetPhe : 286 {.} ! !!!! !.!!... ! !! !!.!:!!! ! ::: ||| +{g}AspProCysSerPheArg***ProThrPheHisLeuCysAlaValIleLysPhe 301586 : g{A}GACCCGTGTTCCTTCCGTTAGCCAACTTTTCATCTCTGCgctgtaattaaattt : 301639 287 : ArgCysThrMetAspIleCysValIleGlyTyrTyrIleLeuSerGluTrpAlaAspA : 306 ... |||:!::!! ! !!:!! !! ! !!!!! !|||||| !:!!! GluSerThrLeuAsnAlaLysPheLeuArgValIle***Phe***GluTrpGlnAsnS 301640 : gaatctACTTTAAATGCAAAGTTTTTACGAGTAATTTGATTTTAGGAATGGCAAAATA : 301699 307 : rgAspIleGlnAsnLeuPheThrTyrPheMetMetLeuIleSerIleCysPheAsnIl : 325 !!|||! !:!!!!.|||!:!|||! :!!|||! |||.!! !|||||||| erAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAsnIl 301700 : GCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATAT : 301756 326 : ePheValIleCysTyrIleGlyGluIleLeuThrGluGln >>>> Target Intr : 339 ||||:!!.!!|||||||||||||||||||||:!!|||||| 80 bp ePheIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301757 : ATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt................ : 301800 340 : on 2 >>>> CysGlnLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLe : 354 |||...:!!:!!|||..!!.! !||| !! !:!!|||||| !!|| ++CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLe 301801 : .........agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTT : 301923 355 : uProAspLysIleIleLeuAspLeuIleLeuIleIleAlaArgSerSerMetValVal : 373 ||||! |||! ! !! !||||||||||||:!!! !!.!! !|||..! ! ! uProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProPro 301924 : ACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCG : 301980 374 : HisIleThrAlaGlyLysLeuValHisMetSerValTyrThrPheGlyAsp >>>> : 391 ! :!!||||||||||||:!!:!! !!:!:|||:!! !!||||||.!!..! LysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSer++ 301981 : AAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTgt..... : 302036 392 : Target Intron 3 >>>> ValValLysThrGlyPheAlaTyrLeuAsnLeuLeu : 402 82 bp ||||||||||||..! ! !.!||||||||||||||| ++ValValLysThrSerValValTyrLeuAsnLeuLeu 302037 : ....................agGTGGTGAAAACATCGGTGGTGTACTTGAATTTACTG : 302149 403 : ArgGlnMetThr : 406 ||| !:!:||| ArgThrValThr 302150 : CGAACAGTTACA : 302163 vulgar: gi|350422508|ref|XP_003493185.1| 181 406 . KQ414889.1 300222 302163 + 279 M 71 213 G 2 0 M 13 39 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 70 210 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300223 302163 279 + . gene_id 20 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300223 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300223 300476 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302163 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302163 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300223 302163 279 + . alignment_id 20 ; Query gi|350422508|ref|XP_003493185.1| ; Align 300223 182 213 ; Align 300436 255 39 ; Align 301588 269 210 ; Align 301878 339 156 ; Align 302116 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 252 Query range: 337 -> 404 Target range: 264723 -> 265004 338 : GlnCysGlnLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAspL : 357 ||||||:!!||||||||||||||||||||||||:!!|||||||||||||||||| !!| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 358 : ysIleIleLeuAspLeuIleLeuIleIleAlaArgSerSerMetValValHisIleTh : 376 || !|||||||||||||||||||||||| !|||||||||:!!||| !! ! .!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 377 : rAlaGlyLysLeuValHisMetSerValTyrThrPheGlyAsp >>>> Target I : 391 ||||||||||:!!:!!|||||||||:!!|||||||||.!!||| 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 392 : ntron 1 >>>> ValValLysThrGlyPheAlaTyrLeuAsnLeuLeuArgGln : 404 bp |||:!!|||:!!..!|||.!!||||||||||||||||||||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArgGln 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGCCAA : 265004 vulgar: gi|350422508|ref|XP_003493185.1| 337 404 . KQ414889.1 264723 265004 + 252 M 53 159 5 0 2 I 0 76 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265004 252 + . gene_id 21 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265004 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265004 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265004 252 + . alignment_id 21 ; Query gi|350422508|ref|XP_003493185.1| ; Align 264724 338 159 ; Align 264963 391 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 247 Query range: 17 -> 232 Target range: 289735 -> 290377 18 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpPro<->SerS : 36 |||!!!!!!:!!||| !!.!|||.!!||||||||||||||| !!::||| !! TyrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrProPheValP 289736 : TACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCT : 289793 37 : erSerSerThrThrArgLeuGluLysIleValSerPheIleLeuAsnIleIleCysPh : 55 !||| !!.!!!:!|||! !|||::!! !.!||| ! :!:|||! !:!::!!|||! heSerArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLeuValCysCy 289794 : TTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTG : 289850 56 : eThrSerValIleValThrAlaIleProSerLeuLeuLeuMetIleLeuGluAspGlu : 74 !:!!! !:!! !!! ! !:!!|||! ! !! !! !:!::!!!!!...|||.!. sSerIleLeuGlnPheIleIleValProPheSerHisHisValLeuPheSerAspAsn 289851 : CTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAAC : 289907 75 : SerIleTyrMetLysLeuLysThrLeuGlyProValSerHisTrpPheValSerSerA : 94 ..!!!: !!! ! :!!|||!.!|||||||||:!!!!! !!! !!...!!!!! ! AspMetAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuThrThrPheP 289908 : GACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCT : 289967 95 : laAsnTyrThrAlaLeuLeuIleArgGlyArgAspIleArgHisCysValGluHisIl : 113 !!!.||| ! !!!! !!!:!:!||| !! ||| !!!.!||||||:!!||||| heLysTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysValLysHisIl 289968 : TCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACAT : 290024 114 : eGluAlaAspTrpArgThrValThrArgGluGluAspGlnHisValMetMetLysAsn : 132 |||| !||||||!:!! !:!! ! !|||!!: !!!:: !:!!|||:!:!:! !! eGluArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMetLeuArgTyr 290025 : CGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATAC : 290081 133 : AlaLysPheGlyArgTyrValAlaAlaSerCysAlaValPheMetGlnGlyGlyValL : 152 !.!! !.!..!!||| !!:!! ! ! !||||||:!!|||:!! ! !|||! !| ValThrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyL 290082 : GTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTC : 290141 153 : euCysPheCysPheValThrAlaLeuThrThrThrGluIleGlnIleGlyAsnGluTh : 171 ||! !!:! ! !|||! ! !!||| !:!!! !:!!! ! !! !||||||! !|| euSerTyrAsnThrValIleProLeuPheSerLysLysSerValAsnGlyAsnValTh 290142 : TGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGGTAACGTGAC : 290198 172 : rArgValLeuHisValLeuProCysAlaValTyrLysLysLeuValAsnValAspGlu : 190 | :!!... !||| !!! ! !!! !|||:!!:!!!!! !!:!!|||.!.:!! r------IleArgProLeuThrTyrProGlyTyrGluGluPhePheAspValGlnLys 290199 : T------ATCAGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAG : 290249 191 : SerProAlaAsnGluIleMetLeuPheLeuGlnIleTrpAlaAlaLeuIleAlaAsnS : 210 ||||||||| !!||||||:!:!!!! !:!!!!. ! !!.!:!!|||.!! ! SerProAlaTyrGluIleValPheCysMetHisCysValTyrValMetIleThrAlaA 290250 : AGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGA : 290309 211 : erSerThrValGlyIlePheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGlyGl : 229 :!! !|||:!!!.! !:!||||||.!!.!!:!!!!!|||.!!|||.!!|||||||| snIleThrMetAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGl 290310 : ACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCA : 290366 230 : nLeuAspVal : 232 |:!! ! :!! nIleLysIle 290367 : GATTAAGATA : 290377 vulgar: gi|350422508|ref|XP_003493185.1| 17 232 . KQ414889.1 289735 290377 + 247 M 17 51 G 0 3 M 137 411 G 2 0 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289736 290377 247 + . gene_id 22 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289736 290377 . + . KQ414889.1 exonerate:protein2genome:local exon 289736 290377 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289736 290377 247 + . alignment_id 22 ; Query gi|350422508|ref|XP_003493185.1| ; Align 289736 18 51 ; Align 289790 35 411 ; Align 290201 174 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 229 Query range: 337 -> 397 Target range: 238625 -> 238805 338 : GlnCysGlnLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAspL : 357 |||||| !|||||||||||||||||||||||||||:!!|||||||||||||||.!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 358 : ysIleIleLeuAspLeuIleLeuIleIleAlaArgSerSerMetValValHisIleTh : 376 :!! !|||||||||||||||||||||||| !||||||!:!:!!|||||| ! :!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 377 : rAlaGlyLysLeuValHisMetSerValTyrThrPheGlyAspValValLysThrGly : 395 ||||||||||:!!:!!|||||||||:!!|||||||||||||||||| !:!!|||..! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 396 : PheAla : 397 .!!||| LeuAla 238798 : CTTGCT : 238805 vulgar: gi|350422508|ref|XP_003493185.1| 337 397 . KQ414889.1 238625 238805 + 229 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238805 229 + . gene_id 23 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238805 229 + . alignment_id 23 ; Query gi|350422508|ref|XP_003493185.1| ; Align 238626 338 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 210 Query range: 301 -> 400 Target range: 228247 -> 230433 302 : GluTrpAlaAspArgAspIleGlnAsnLeuPheThrTyrPheMetMetLeuIleSerI : 321 |||||| ! !:!!!::!! ! ! ! ! ||||||! !:!:|||:!!|||. GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerP 228248 : GAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCT : 228305 322 : leCysPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluGln >>> : 339 !! ||||||||||||:::...||||||||||||||||||:!!.!!|||!!. heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluHis++ 228306 : TTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACgt... : 228361 340 : > Target Intron 1 >>>> CysGlnLysValGlyGluValValTyrMetThrA : 350 1889 bp |||::!|||||||||||| ! !||||||! !. ++CysArgLysValGlyGluLysSerTyrMetIleG 228362 : ......................agTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCG : 230281 351 : snTrpTyrTyrLeuProAspLysIleIleLeuAspLeuIleLeuIleIleAlaArgSe : 369 !.|||||| ||| !!! !!.! ! ||| !! !|||||||||||||||! !|| luTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 230282 : AATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTC : 230338 370 : rSerMetValValHisIleThrAlaGlyLysLeuValHisMetSerValTyrThrPhe : 388 |!:! !..! ! .!!|||||||||!!.:!!|||.!.:!:|||||| !!|||||| rAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnThrPhe 230339 : CAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACACTTTC : 230395 389 : GlyAspValValLysThrGlyPheAlaTyrLeuAsn : 400 .!!|||||| !! ! ! !! !!.!||| !||| SerAspValSerIleIlePheSerValTyrThrAsn 230396 : AGCGACGTAAGTATCATATTCTCTGTTTACACGAAT : 230433 vulgar: gi|350422508|ref|XP_003493185.1| 301 400 . KQ414889.1 228247 230433 + 210 M 37 111 5 0 2 I 0 1885 3 0 2 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228248 230433 210 + . gene_id 24 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228248 230433 210 + . alignment_id 24 ; Query gi|350422508|ref|XP_003493185.1| ; Align 228248 302 111 ; Align 230248 339 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 198 Query range: 301 -> 401 Target range: 280091 -> 280465 302 : GluTrpAlaAspArgAspIleGlnAsnLeuPheThrTyrPheMetMetLeuIleSerI : 321 ||||||! !.!.!.!||| ! !... !|||||||||!!.|||.!.|||||||||: GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerL 280092 : GAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTT : 280149 322 : leCysPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGlu{G} >>> : 338 !! ||||||:!!|||:!!:!!|||||||||||||||||||||:!!|||{|} euThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGlu{G}-- 280150 : TAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAA{C}ag... : 280203 339 : > Target Intron 1 >>>> {ln}CysGlnLysValGlyGluValValTyrMet : 348 74 bp {||}||| !|||||||||! ! !..!|||||| +-{ln}CysLeuLysValGlyValSerThrTyrMet 280204 : ......................at{AG}TGCTTAAAAGTCGGCGTGTCAACTTACATG : 280304 349 : ThrAsnTrpTyrTyrLeuProAspLysIleIleLeuAspLeuIleLeuIleIleAlaA : 368 ! !:!!|||||| !||||||! |||! ! !! !! !||||||||||||.!!||| IleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaV 280305 : ATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCG : 280364 369 : rgSerSerMetValValHisIleThrAlaGlyLysLeuValHisMetSerValTyrTh : 387 !|||!:! !:!! ! :!!||||||||||||:!!:!! !!:!:|||:!! !!: alSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSe 280365 : TGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAG : 280421 388 : rPheGlyAspValValLysThrGlyPheAlaTyrLeuAsnLeu : 401 !||| !!..!||| !! ! !..!!!.:!!|||! !:!!||| rPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280422 : CTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: gi|350422508|ref|XP_003493185.1| 301 401 . KQ414889.1 280091 280465 + 198 M 36 108 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280092 280465 198 + . gene_id 25 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280092 280200 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280200 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280201 280202 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local intron 280201 280274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280273 280274 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 280275 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280275 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280092 280465 198 + . alignment_id 25 ; Query gi|350422508|ref|XP_003493185.1| ; Align 280092 302 108 ; Align 280277 339 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 193 Query range: 297 -> 391 Target range: 305088 -> 305783 298 : TyrIleLeuSerGluTrpAlaAspArgAspIleGlnAsnLeuPheThrTyrPheMetM : 317 |||::: ..!!!:|||! !..!!!!:!!! ! !:!||| |||||| :!!: TyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValL 305089 : tatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGT : 305146 318 : etLeuIleSerIleCysPheAsnIlePheValIleCysTyrIleGlyGluIleLeuTh : 336 !:|||||||||:!! ||||||||||||:!!:!!|||||||||||||||||||||! euLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMe 305147 : TACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTAT : 305203 337 : rGluGlnCys{Gl} >>>> Target Intron 1 >>>> {n}LysValGlyGlu : 344 !|||:!! {..} 413 bp {.}!..|||||| ! tGluLysVal{Se}-+ ++{r}SerValGlyLeu 305204 : GGAAAAGGTG{ag}tt.........................ag{T}AGCGTTGGATTA : 305640 345 : ValValTyrMetThrAsnTrpTyrTyrLeuProAspLysIleIleLeuAspLeuIleL : 364 ! !!:!|||! !!:!||||||:!!|||||| !|||! |||! !! !||||||| SerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleL 305641 : TCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTT : 305700 365 : euIleIleAlaArgSerSerMetValValHisIleThrAlaGlyLysLeuValHisMe : 383 |||||||||||! !||||||! !!.! ! |||!:!|||||||||:!!||| !!:! euIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysValValAspLe 305701 : TAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTT : 305757 384 : tSerValTyrThrPheGlyAspVal : 391 :|||:!!! !|||||||||:!!||| uSerLeuSerThrPheGlyAsnVal 305758 : ATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: gi|350422508|ref|XP_003493185.1| 297 391 . KQ414889.1 305088 305783 + 193 M 42 126 S 0 2 5 0 2 I 0 409 3 0 2 S 1 1 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305089 305783 193 + . gene_id 26 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305089 305216 . + . KQ414889.1 exonerate:protein2genome:local exon 305089 305216 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305217 305218 . + . intron_id 1 ; splice_site "tt" KQ414889.1 exonerate:protein2genome:local intron 305217 305629 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305628 305629 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305630 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305630 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305089 305783 193 + . alignment_id 26 ; Query gi|350422508|ref|XP_003493185.1| ; Align 305089 298 126 ; Align 305631 341 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 185 Query range: 267 -> 341 Target range: 263671 -> 264657 268 : AsnPheIleSerCysIleGluAspValMetAsnArgIleTyrPheLeuGluMetPheA : 287 !:!||||||..! !!|||:!!:!!||||||!:!! !|||! !|||:!!|||:!:|||! SerPheIleAspArgIleLysAsnValMetSerThrIleCysPheValGluLeuPheL 263672 : AGTTTCATAGATCGTATTAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCA : 263729 288 : rgCysThrMetAspIleCys{Va} >>>> Target Intron 1 >>>> {l}Il : 295 :!..!|||:!!|||||||||{:!} 764 bp {!}|| ysAlaThrLeuAspIleCys{Il}+- +-{e}Il 263730 : AGGCTACGCTGGATATATGC{AT}gc.........................aa{T}AT : 264517 296 : eGlyTyrTyrIleLeuSerGluTrpAlaAspArgAspIleGlnAsnLeuPheThrTyr : 314 | ! ! !!:!!!!!..!||||||! !..!!..||||||||||||||| !|||||| eThrIleAspValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyr 264518 : AACAATTGACGTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATAT : 264574 315 : PheMetMetLeuIleSerIleCysPheAsnIlePheValIleCysTyrIleGlyGluI : 334 ||||||!!:|||||||||!!:||| !|||||||||:!!!!:|||||||||||||||| PheMetIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluI 264575 : TTCATGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGA : 264634 335 : leLeuThrGluGlnCysGlnLys : 341 |||||||||||||| ||| leLeuThrGluGlnValIleLys 264635 : TATTGACTGAGcaggtaattaaa : 264657 vulgar: gi|350422508|ref|XP_003493185.1| 267 341 . KQ414889.1 263671 264657 + 185 M 26 78 S 0 2 5 0 2 I 0 760 3 0 2 S 1 1 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 263672 264657 185 + . gene_id 27 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 263672 263751 . + . KQ414889.1 exonerate:protein2genome:local exon 263672 263751 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263752 263753 . + . intron_id 1 ; splice_site "GC" KQ414889.1 exonerate:protein2genome:local intron 263752 264515 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264514 264515 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 264516 264657 . + . KQ414889.1 exonerate:protein2genome:local exon 264516 264657 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 263672 264657 185 + . alignment_id 27 ; Query gi|350422508|ref|XP_003493185.1| ; Align 263672 268 78 ; Align 264517 295 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 181 Query range: 17 -> 116 Target range: 299689 -> 299989 18 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpPro<->SerS : 36 |||!!!||||||:!! !!:!|||!!.|||||||||||||||!.!|||! ! !. TyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpArgLeuLeuA 299690 : TACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGCGATTGCTAG : 299747 37 : erSerSerThrThrArgLeuGluLysIleValSerPheIleLeuAsnIleIleCysPh : 55 .!..! !!:!!!:!!:!|||||| ! :!!||||||.!!:!!|||! ! !|||||||| spGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMetThrIleCysPh 299748 : ATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATGACAATATGCTT : 299804 56 : eThrSerValIleValThrAlaIleProSerLeuLeuLeuMetIleLeuGluAspGlu : 74 |:!!|||:!!.!! !!! !!.!:!:|||||| !! !! !!!:.!!!!!! !!!::!! eSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePhePheAlaGluLys 299805 : CTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCTTCGCGGAGAAA : 299861 75 : SerIleTyrMetLysLeuLysThrLeuGlyProValSerHisTrpPheValSerSerA : 94 ||||||:!!:!:|||:!!|||..!!!!|||||||||.!! !!! .!! !|||! !! SerIleHisValLysValLysValPheGlyProValGlyPheCysLeuSerSerIleV 299862 : AGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCATCG : 299921 95 : laAsnTyrThrAlaLeuLeuIleArgGlyArgAspIleArgHisCysValGluHisIl : 113 .!!!.||| ! !|||! !:!:!.!||| !!! .!!..!!..|||:!!:!!|||:! alLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCysIleGlnHisVa 299922 : TCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGCATCCAACACGT : 299978 114 : eGluAlaAsp : 116 !||| !||| lGluArgAsp 299979 : CGAGAGAGAC : 299989 vulgar: gi|350422508|ref|XP_003493185.1| 17 116 . KQ414889.1 299689 299989 + 181 M 17 51 G 0 3 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299690 299989 181 + . gene_id 28 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299690 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299690 299989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299690 299989 181 + . alignment_id 28 ; Query gi|350422508|ref|XP_003493185.1| ; Align 299690 18 51 ; Align 299744 35 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 301 -> 391 Target range: 206050 -> 206401 302 : GluTrpAlaAspArgAspIleGlnAsnLeuPheThrTyrPheMetMetLeuIleSerI : 321 ||||||! !:!!!.!:!!! ! ! :!!.!...!|||.!!! !:!!! !|||||| GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 322 : leCysPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluGln >>> : 339 ! ||| !:!!|||:!!:!!||||||||||||:!!:!!|||! !!!:||| ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 340 : > Target Intron 1 >>>> CysGlnLysValGlyGluValValTyrMetThrA : 350 81 bp !!!. |||||| !..! !! !! !..!| ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 351 : snTrpTyrTyrLeuProAspLysIleIleLeuAspLeuIleLeuIleIleAlaArgSe : 369 |||||||| !||||||:!!!:! ! ! !..!:!!|||||||||||||||! !|| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 370 : rSerMetValValHisIleThrAlaGlyLysLeuValHisMetSerValTyrThrPhe : 388 |!:! !:!! ! :!!||||||||||||:!! !!.!.||||||:!! !!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 389 : GlyAspVal : 391 !|||||| ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: gi|350422508|ref|XP_003493185.1| 301 391 . KQ414889.1 206050 206401 + 166 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 166 + . gene_id 29 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 166 + . alignment_id 29 ; Query gi|350422508|ref|XP_003493185.1| ; Align 206051 302 111 ; Align 206243 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 294 -> 391 Target range: 297439 -> 297803 295 : IleGlyTyrTyrIleLeuSerGluTrpAlaAspArgAspIleGlnAsnLeuPheThrT : 314 ::: |||:::......... !||| ! !!.!|||!!: ! ! ! ||| LeuLysTyrHisPhePheGlnGlyTrpLysThrHisAspMetIlePheGlyValThrI 297440 : ttaaaatatcatttttttcaggGATGGAAAACTCACGATATGATTTTTGGGGTAACGA : 297497 315 : yrPheMetMetLeuIleSerIleCysPheAsnIlePheValIleCysTyrIleGlyGl : 333 ! ! .!.:!!:!!|||||| !|||||||||||||||:!!|||:!! !||||| leGlyGlyPheMetLeuSerIleThrPheAsnIlePheValLeuCysHisAlaGlyGl 297498 : TCGGCGGTTTCATGCTTTCGATCACTTTTAATATATTCGTATTATGTCATGCAGGTGA : 297554 334 : uIleLeuThrGluGln >>>> Target Intron 1 >>>> CysGlnLysValG : 343 |:!!|||..!|||:!! 73 bp ..!:!!||| !!| uLeuLeuValGluGlu++ ++AlaGluLysPheG 297555 : ACTTCTTGTCGAGGAGgt.........................agGCTGAAAAATTCG : 297657 344 : lyGluValValTyrMetThrAsnTrpTyrTyrLeuProAspLysIleIleLeuAspLe : 362 ||.!.!.!!.!|||! ! !.!.|||||| !!|||||| !!.! !|||||||| lyAsnAlaAlaTyrAsnIleGluTrpTyrAsnLeuProProAsnArgAlaLeuAspLe 297658 : GCAATGCAGCTTATAACATCGAATGGTACAACTTACCGCCAAACAGGGCTCTCGATCT : 297714 363 : uIleLeuIleIleAlaArgSerSerMetValValHisIleThrAlaGlyLysLeuVal : 381 |:!:|||!!:|||!.!! !:!!!.!.!. ! !...:!!|||...||||||::: uValLeuMetIleGlyIleAlaLysPheProProArgLeuThrGlyGlyLysIlePhe 297715 : GGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCACAggtggaaaaatattc : 297771 382 : HisMetSerValTyrThrPheGlyAspVal : 391 :::|||:!! !!||||||.!!! !||| AspIleSerIleAsnThrPheSerAlaVal 297772 : gatatatCGATAAACACGTTCAGTGCCGTA : 297803 vulgar: gi|350422508|ref|XP_003493185.1| 294 391 . KQ414889.1 297439 297803 + 161 M 44 132 5 0 2 I 0 69 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297440 297803 161 + . gene_id 30 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 297440 297571 . + . KQ414889.1 exonerate:protein2genome:local exon 297440 297571 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 297572 297573 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 297572 297644 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 297643 297644 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 297645 297803 . + . KQ414889.1 exonerate:protein2genome:local exon 297645 297803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297440 297803 161 + . alignment_id 30 ; Query gi|350422508|ref|XP_003493185.1| ; Align 297440 295 132 ; Align 297645 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 112 -> 234 Target range: 304413 -> 304776 113 : IleGluAlaAspTrpArgThrValThrArgGluGluAspGlnHisValMetMetLysA : 132 :!!....!!! !::..! !||| ! ! ..!|||!::.!.:!!|||:!:||| LeuSerThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysT 304414 : CTCTCTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAAT : 304471 133 : snAlaLysPheGlyArgTyrValAlaAlaSerCysAlaValPheMetGlnGlyGlyVa : 151 !!!.!:!!.!.|||||| !!:!!.!! !! !||||||:!!|||||| ! !|||! yrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGl 304472 : ACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGG : 304528 152 : lLeuCysPheCysPheValThrAlaLeuThrThrThrGluIleGlnIleGlyAsnGlu : 170 ! ! !!:! ! |||! ! !!!! .!!|||! !! ! :!:! !.!. ! yThrIleTyrHisThrValMetGlnPhe---AlaThrGlyThrTyrValAspGluTyr 304529 : CACCATTTATCACACGGTCATGCAGTTC---GCGACCGGAACGTATGTGGATGAGTAT : 304582 171 : ThrArgValLeuHisValLeuProCysAlaValTyrLysLysLeuValAsnValAspG : 190 !.!|||..!:!! ! !||| !! ! !!..!|||!.. ||| !!:!!|||.!. AsnArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnT 304583 : AATCGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAA : 304642 191 : luSerProAlaAsnGluIleMetLeuPheLeuGlnIleTrpAlaAlaLeuIleAlaAs : 209 !|||||| ! !!|||:!::!:! !|||:!!!!. ! !..!!.!! !:!! ! ! hrSerProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTy 304643 : CAAGCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTA : 304699 210 : nSerSerThrValGlyIlePheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGly : 228 !|||! !|||!.!||| !! !.!!|||||||||:!!!!!|||.!!|||||||||||| rSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGly 304700 : TTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGA : 304756 229 : GlnLeuAspValIleMet : 234 |||:!!|||:!!:!!||| GlnIleAspIleValMet 304757 : CAAATTGATATCGTTATG : 304776 vulgar: gi|350422508|ref|XP_003493185.1| 112 234 . KQ414889.1 304413 304776 + 148 M 48 144 G 1 0 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304414 304776 148 + . gene_id 31 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304414 304776 . + . KQ414889.1 exonerate:protein2genome:local exon 304414 304776 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 304414 304776 148 + . alignment_id 31 ; Query gi|350422508|ref|XP_003493185.1| ; Align 304414 113 144 ; Align 304558 162 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 329 -> 391 Target range: 224472 -> 224658 330 : TyrIleGlyGluIleLeuThrGluGlnCysGlnLysValGlyGluValValTyrMetT : 349 |||.!! !..!:!!!!! ! ||||||:::|||:::|||::!||| !||||||! TyrPheLeuSerLeuPhePheProGlnCysGluLysIleGlyGlnValSerTyrMetI 224473 : TATTTTTTATCGCTATTTTTTCCtcagtgtgaaaaaattggacaAGTGTCGTACATGA : 224530 350 : hrAsnTrpTyrTyrLeuProAspLysIleIleLeuAspLeuIleLeuIleIleAlaAr : 368 !:!!|||||| ||| !!! !!.! ! !||| !! !|||||||||||||||! leAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMe 224531 : TCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGAT : 224587 369 : gSerSerMetValValHisIleThrAlaGlyLysLeuValHisMetSerValTyrThr : 387 !|||!:! !:!! ! :!:|||||||||!!.:!!|||.!.:!!!!!:!! !||| tSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThr 224588 : GTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACT : 224644 388 : PheGlyAspVal : 391 |||||||||||| PheGlyAspVal 224645 : TTCGGTGACGTA : 224658 vulgar: gi|350422508|ref|XP_003493185.1| 329 391 . KQ414889.1 224472 224658 + 133 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224473 224658 133 + . gene_id 32 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224473 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224473 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224473 224658 133 + . alignment_id 32 ; Query gi|350422508|ref|XP_003493185.1| ; Align 224473 330 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 184 -> 237 Target range: 202712 -> 202871 185 : LeuValAsnValAspGluSerProAlaAsnGluIleMetLeuPheLeuGlnIleTrpA : 204 :!!:!!:!!||| ! ||||||!.!|||||||||.!.!!!! :!!!:!||| | IleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleValA 202713 : ATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAG : 202770 205 : laAlaLeuIleAlaAsnSerSerThrValGlyIlePheSerLeuAlaAlaValLeuAl : 223 ||!.!:!!:!! !:!!.!! !||||||||| !! !!!!|||.!!|||:!!!!!|| laValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAl 202771 : CTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGC : 202827 224 : aAlaHisAlaCysGlyGlnLeuAspValIleMetMetTrpIle : 237 |!.!|||! !|||||||||:!!||||||:!:||| |||:!: aValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeu 202828 : GGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTG : 202871 vulgar: gi|350422508|ref|XP_003493185.1| 184 237 . KQ414889.1 202712 202871 + 121 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202713 202871 121 + . gene_id 33 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202713 202871 . + . KQ414889.1 exonerate:protein2genome:local exon 202713 202871 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202713 202871 121 + . alignment_id 33 ; Query gi|350422508|ref|XP_003493185.1| ; Align 202713 185 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 290 -> 338 Target range: 210630 -> 210774 291 : AspIleCysValIleGlyTyrTyrIleLeuSerGluTrpAlaAspArgAspIleGlnA : 310 |||||| !! ! !..! ! !:!:!!|||! !||||||! !..!!:!||| ! ! AspIleSerSerAspSerGlnPheLeuLeu***GluTrpAspSerLysAspProIleS 210631 : GATATAAGTTCTGATTCGCAATTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCA : 210688 311 : snLeuPheThrTyrPheMetMetLeuIleSerIleCysPheAsnIlePheValIleCy : 329 :! !.!.||||||.!.:!::!:|||! !|||:!! ||||||||||||:!!.!!|| erSerLeuThrTyrIleValLeuLeuThrSerValThrPheAsnIlePheIlePheCy 210689 : GCAGTCTGACGTACATAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTG : 210745 330 : sTyrIleGlyGluIleLeuThrGluGln : 338 |||||||||||||:!:|||.!!|||||| sTyrIleGlyGluValLeuAlaGluGln 210746 : TTACATCGGTGAAGTGTTGGCTGAACAg : 210774 vulgar: gi|350422508|ref|XP_003493185.1| 290 338 . KQ414889.1 210630 210774 + 120 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210631 210774 120 + . gene_id 34 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 210631 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210631 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210631 210774 120 + . alignment_id 34 ; Query gi|350422508|ref|XP_003493185.1| ; Align 210631 291 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 301 -> 342 Target range: 238411 -> 238534 302 : GluTrpAlaAspArgAspIleGlnAsnLeuPheThrTyrPheMetMetLeuIleSerI : 321 |||||||||!!:!!!||| !:!!! !|||.!!|||||||||:!: |||:!!:!!| GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheValAlaLeuValAlaI 238412 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTGTAGCACTCGTTGCTA : 238469 322 : leCysPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluGlnCysGl : 340 || !! !|||! !|||:!!:!!|||||||||.!!|||! |||||||||||| || leValSerAsnThrPheIleLeuCysTyrIleSerGluArgLeuThrGluGlnValGl 238470 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGAAAGGCTGACAGAACAGGTACA : 238526 341 : nLysVal : 342 |:!!:!! nGluIle 238527 : AGAGATT : 238534 vulgar: gi|350422508|ref|XP_003493185.1| 301 342 . KQ414889.1 238411 238534 + 120 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238412 238534 120 + . gene_id 35 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238412 238534 . + . KQ414889.1 exonerate:protein2genome:local exon 238412 238534 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238412 238534 120 + . alignment_id 35 ; Query gi|350422508|ref|XP_003493185.1| ; Align 238412 302 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 299 -> 349 Target range: 224317 -> 224467 300 : LeuSerGluTrpAlaAspArgAspIleGlnAsnLeuPheThrTyrPheMetMetLeuI : 319 !!!...||||||:::... !!:!! !:! ! ! |||||||||!!::!:|||! PheGlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuM 224318 : TTTCaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCA : 224375 320 : leSerIleCysPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluGl : 338 !:|||::: ||||||||||||:::...|||||||||||||||:!::!!.!!||||| etSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl 224376 : TGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAca : 224432 339 : nCysGlnLysValGlyGluValValTyrMetThr : 349 | :::... :::::: ::: ||| nValLysAsnPheLeuLysLeuPhePheThrThr 224433 : ggtgaaaaattttttaaaattattcttcacCACT : 224467 vulgar: gi|350422508|ref|XP_003493185.1| 299 349 . KQ414889.1 224317 224467 + 118 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224318 224467 118 + . gene_id 36 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224318 224467 . + . KQ414889.1 exonerate:protein2genome:local exon 224318 224467 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224318 224467 118 + . alignment_id 36 ; Query gi|350422508|ref|XP_003493185.1| ; Align 224318 300 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350415235|ref|XP_003490575.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 303 -> 388 Target range: 1708202 -> 1708472 304 : LeuThrAlaLeuMetValGlnLeuPheAlaTyrSerTyrValGlyGluTyrLeuAr : 322 ||||||!.!! !:!! !||||||!!. !!:!!!!||| ! !!!!:! !|||! LeuThrGlyCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIl 1708203 : CTAACGGGATGCCTGTGCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGAT : 1708257 323 : gArgGlnMetGluGlyIleGlyAspSerMetTyrPheCysAsnTrpTyrAspIleP : 341 !|||:!!! !..!:!:!.!:!!:!!!!:||| !|||:::||| ! !!:!:| eArgGluSerLeuAsnValAlaAsnAlaIleTyrAspCysSerTrpIleHisLeuP 1708258 : ACGAGAAAGCTTGAACGTGGCCAATGCTATATACGACTGCTCGTGGATTCACTTGC : 1708314 342 : ro<-><-><-><-><->LysSerValAlaLysAspIleIleTyrValIleMetArg : 354 || ::!! !:!! !||||||:!:! !!:!|||||| ||| roMetAspArgSerGlyArgMetLeuArgLysAspLeuThrPheValIleGlyArg 1708315 : CAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGA : 1708368 355 : AlaGlnGluProValPheLeuArgAlaGlyGlnPheLeuValValAsnMetGluTh : 373 :!!::!! !||| !! !|||! !||| !! !|||!!! !|||::::!!||||| SerArgValProCysCysLeuThrAlaCysGlyPhePheProValSerLeuGluTh 1708369 : TCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAAC : 1708425 374 : rTyrThrSerIleIleLysThrSerMetSerTyrLeuSerValLeu : 388 ||||||||||:!!||| ! :!!!!!.!. ! :!!|||:!!||| rTyrThrSerValIleHisSerThrPheHisThrIleSerMetLeu 1708426 : GTACACTTCGGTAATTCATTCAACATTTCACACGATATCGATGTTA : 1708472 vulgar: gi|350415235|ref|XP_003490575.1| 303 388 . KQ414915.1 1708202 1708472 + 100 M 38 114 G 0 15 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1708203 1708472 100 + . gene_id 1 ; sequence gi|350415235|ref|XP_003490575.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1708203 1708472 . + . KQ414915.1 exonerate:protein2genome:local exon 1708203 1708472 . + . insertions 15 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1708203 1708472 100 + . alignment_id 1 ; Query gi|350415235|ref|XP_003490575.1| ; Align 1708203 304 114 ; Align 1708332 342 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 295 -> 405 Target range: 807257 -> 807587 296 : GlyTyrTyrIleLeuSerGluTrpAlaAspArgAspIleGlnAsnLeuPheThrTyrP : 315 |||!:! !.!!||| !! !::! !:!|||! ! !!!.! ! !| GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 316 : heMetMetLeuIleSerIleCysPheAsnIlePheValIleCysTyrIleGlyGluIl : 334 ||:!::!!:!!:!:!!!:!: .!!.!.:!:!:!:!! !..!||| |||.!.! heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 335 : eLeuThrGluGlnCysGlnLysValGlyGluValValTyrMetThrAsnTrpTyrTyr : 353 !||| !..!!:! !:!!:!!:!!!.!:!!!.!!.!||| :!! !|||||| ! rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 354 : LeuProAspLysIleIleLeuAspLeuIleLeuIleIleAlaArgSerSerMetValV : 373 ! !! !! ! ! ! !||||||:!!||||||||| !|||.!!!:! ! ! CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 374 : alHisIleThrAlaGlyLysLeuValHisMetSerValTyrThrPheGlyAspValVa : 392 !!.!|||||||||||||||!!!|||! |||!:!:!!!:!|||||| !!!::!!:! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 393 : lLysThrGlyPheAlaTyrLeuAsnLeuLeuArgGlnMet : 405 !|||.!!..! !:!!||||||::!:!!:!!!:! !||| uLysAlaSerGlySerTyrLeuSerValMetLysValMet 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: gi|350422508|ref|XP_003493185.1| 295 405 . KQ414940.1 807257 807587 + 154 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807587 154 + . gene_id 1 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807587 154 + . alignment_id 1 ; Query gi|350422508|ref|XP_003493185.1| ; Align 807258 296 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 296 -> 401 Target range: 807266 -> 807578 297 : TyrIleLeuAlaGluTrpSerGluHisAsnIleGlnAsnIleAlaAlaTyrValMetI : 316 !:!:!::!!||| ! ! !!!:!! !!|||:!! ! :!: !::!!:!||| : PheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheVal---L 807267 : TTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTT---C : 807321 317 : leIleIleSerMetThrCysAsnIlePheLeuValCysTyrIleGlyGluIleIleMe : 335 !:!!::!:!!!:!! ! !.!.:!:!:!||| !..!||| |||.!.! !:!! euMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGl 807322 : TGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGA : 807378 336 : tGluLysCysLysLysIleGlyAspMetValTyrMetAlaAspTrpHisHisLeuPro : 354 !..!::! !:!!:!!|||!.!.!. !.!||| :!! !|||:!!!.!! !! ! uSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHis 807379 : GTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCAC : 807435 355 : AspGlnAspIleIleAsnLeuIleMetIleIleSerArgSerSerMetGluValLysI : 374 ! !!.! !! !:!!|||:!!:!!|||||| !|||.!!!:! ! !:::| GlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgI 807436 : GGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTA : 807495 375 : leThrAlaGlyLysIleIleAspMetSerValLeuThrPheAlaAsnIleValLysTh : 393 ||||||||||||||.!!:!! |||!:!:!!!!!|||||| !.!.|||:!!|||.! leThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAl 807496 : TAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGC : 807552 394 : rValPheAlaTyrLeuAsnMetLeu : 401 ! ! !:!!||||||::!:!::!! aSerGlySerTyrLeuSerValMet 807553 : TTCTGGCTCGTATCTGTCTGTAATG : 807578 vulgar: gi|350412835|ref|XP_003489780.1| 296 401 . KQ414940.1 807266 807578 + 123 M 18 54 G 1 0 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807267 807578 123 + . gene_id 1 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807267 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807267 807578 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807267 807578 123 + . alignment_id 1 ; Query gi|350412835|ref|XP_003489780.1| ; Align 807267 297 54 ; Align 807321 316 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350415138|ref|XP_003490544.1| PREDICTED: odorant receptor Or2 [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 378 Query range: 179 -> 394 Target range: 806514 -> 807596 180 : IleProAspAsnPheTyrLeuIleValPheIleValGluTyrLeuMetLeuLeuSerT : 199 :!!||| .!. !:!!:!! !|||!!.:!::!!:!! :!! :!!!!!! !! LeuProLeuGlnHisHisValCysValLeuLeuLeuGlnGlyMetHisIlePhePheA 806515 : TTACCGTTGCAGCATCACGTCTGCGTGTTACTGCTGCAAGGGATGCACATTTTCTTCA : 806572 200 : hrSerAsnGlyAsnIleGlyAsnAspSerLeuPhePheGlyIleIlePheHisLeuCy : 218 .!:!! !.!:!! !|||||||||.!!|||||||||.!!:!:! .!.|||||||| snAlaValAlaHisCysGlyAsnAspGlyLeuPhePheSerLeuThrMetHisLeuCy 806573 : ACGCCGTGGCTCACTGCGGCAACGACGGCCTCTTCTTCAGCCTGACGATGCATCTGTG : 806629 219 : sGlyGlnValGluIleLeuLysLeuAspPheLysArgLeuArgAsnGluThrGluLys : 237 ||||||| !!||||||||||||:!!:!!.!. !..!:!!..! !|||.!! sGlyGlnPheGluIleLeuLysMetAsnLeuAlaGluIleGluPheGluAlaIleAla 806630 : CGGTCAGTTTGAAATTCTGAAGATGAATCTGGCGGAGATCGAGTTCGAGGCGATCGCT : 806686 238 : ThrArgGluHisPheSerValLeuThrLysArgHisValTyrLeuLeuAsnLeuAlaL : 257 !|||:!!!...!!.!!||||||..!||||||||| ! ! ||| ! |||.!!! CysArgLysArgIleGlyValLeuValLysArgHisCysLysLeuAlaValLeuThrA 806687 : TGTCGGAAGCGAATCGGCGTTCTCGTGAAACGACACTGCAAACTGGCGGTGTTGACCA : 806746 258 : ysMetLeuAspAspThrIleSerSerIleLeuAlaValGlnLeuPheThrSerCysTh : 276 !. |||!!:.!.!:!.!!|||! !|||:!! !|||||||||.!.! !|||... snAspLeuGluGlnSerPheSerMetIleIleLeuValGlnLeuMetMetSerAlaLe 806747 : ACGATCTCGAGCAGAGCTTCAGTATGATTATTCTGGTGCAACTCATGATGAGTGCGTT : 806803 277 : rLeuIleCysThrSer{G} >>>> Target Intron 1 >>>> {ly}LeuGln : 284 !|||||||||..!..!{|} 437 bp {||}!!! uLeuIleCysValGlu{G}++ ++{ly}PheVal 806804 : GCTAATTTGCGTAGAA{G}gt.........................ag{GT}TTCGTC : 807264 285 : PheIleIleAlaLeuSerValGlyAsnIleValMetThrIleLysThrPheIleValL : 304 |||:!::!!|||||||||..! !:!!! !||| .!!:!:!:!!:!|||:!!:!!: PheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuM 807265 : TTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGA : 807324 305 : euGlyThrLeuLeuGlyGlnLeuPheAlaTyrSerTyrValGlyAspTyrLeuAsnAr : 323 !!! !||||||||| !||||||!:! !|||:!!|||!.!|||:!! |||.!. etValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSe 807325 : TGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTC : 807381 324 : gGlnMetGluAlaIleGlyAspSerIleTyrSerCysSerTrpTyrAspIleProLys : 342 !!:!! |||! !|||!.!.!.:!! !|||..!! ! !|||||| ! !! ! ! rArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGly 807382 : GCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGG : 807438 343 : SerValThrLysAspIleIleTyrValIleMetArgAlaGlnAspProValTyrLeuL : 362 !!.!.!!!:!|||:!!:!!! :!!||| |||!.!.!....||| ! !:!!! HisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleT 807439 : CACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAA : 807498 363 : ysAlaGlyLysPhePheIleLeuAsnMetGluThrTyrMetSerIleIleLysThrSe : 381 !|||||||||||| !! :!!|||:!: |||!:!! !..!|||:!:|||.!!|| hrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSe 807499 : CAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTC : 807555 382 : rMetSerTyrLeuSerValLeuArgValMetIleSerAla : 394 | |||||||||||||||:!!!:!||||||!!:..!||| rGlySerTyrLeuSerValMetLysValMetMetAspAla 807556 : TGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGACGCA : 807596 vulgar: gi|350415138|ref|XP_003490544.1| 179 394 . KQ414940.1 806514 807596 + 378 M 102 306 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 112 336 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806515 807596 378 + . gene_id 1 ; sequence gi|350415138|ref|XP_003490544.1| ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 806515 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806515 806821 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807258 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807596 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807596 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 806515 807596 378 + . alignment_id 1 ; Query gi|350415138|ref|XP_003490544.1| ; Align 806515 180 306 ; Align 807261 283 336 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 295 -> 401 Target range: 807266 -> 807581 296 : TyrIleLeuAlaGluTrpSerGluHisAsnValGlnAlaMetIleIleTyrValMetV : 315 !:!:!::!!||| ! ! !!!:!! !!|||||| !|||:!!! ! !!:!|||:!!: PheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuM 807267 : TTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGA : 807324 316 : alPheLeuSerMetThrPheAsnIlePheLeuIleCysTyrIleGlyGluValLeuLy : 334 !! :!!!!!:!! !.!!.!.:!:!:!||| !..!||| |||.!...!|||:! et---ValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGl 807325 : TG---GTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGA : 807378 335 : sGluGlnCysGlnLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuPro : 353 !..!!:! !:!!:!!:!!!.!.!. !.!||| :!! !||||||!::! !! ! uSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHis 807379 : GTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCAC : 807435 354 : AspLysAsnIleLeuSerIleIleMetIleIleSerArgSerHisMetGluValLysI : 373 ! ! ! !..!:!!:!!:!!|||||| !|||.!!:!! ! !:::| GlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgI 807436 : GGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTA : 807495 374 : leThrAlaGlyLysIleIleThrMetSerValTyrThrPheGlyAsnIleIleLysTh : 392 ||||||||||||||.!!:!! !!|||!:!:!!!:!|||||| !.!.|||:!:|||.! leThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAl 807496 : TAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGC : 807552 393 : rValPheThrTyrPheAsnMetLeuArg : 401 ! ! !:!!|||.!.::!:!::!!!:! aSerGlySerTyrLeuSerValMetLys 807553 : TTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: gi|350412806|ref|XP_003489770.1| 295 401 . KQ414940.1 807266 807581 + 134 M 20 60 G 1 0 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807267 807581 134 + . gene_id 1 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807267 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807267 807581 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807267 807581 134 + . alignment_id 1 ; Query gi|350412806|ref|XP_003489770.1| ; Align 807267 296 60 ; Align 807327 317 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350415230|ref|XP_003490573.1| PREDICTED: odorant receptor 24a-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 228 Query range: 280 -> 394 Target range: 807254 -> 807596 281 : SerGlyLeuGlnPheIleIleAlaLeuSerValGlyAsnIleValMetThrIleLysS : 300 !!!|||!!! |||:!::!!|||||||||..! !:!!! !||| .!!:!:!:!| ThrGlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgS 807255 : ACAGGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGA : 807312 301 : erPheIleValLeuSerThrLeuLeuValGlnLeuPheAlaTyrSerTyrValGlyGl : 319 |||||:!!:!!:!! !|||||||||:!!||||||!:! !|||:!!|||!.!|||.! erPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807313 : GCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 320 : uTyrLeuLysArgGlnMetGluGlyIleGlyAspSerValTyrPheSerSerTrpTyr : 338 . |||:!! !!:!! |||! !|||!.!.!.:!!!.!||| !||| !|||||| nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 339 : AspIleProThrSerValAlaLysAspIleIleTyrValIleMetArgThrGlnAspP : 358 ! !! ! ! !!.!|||!:!|||:!!:!!! :!!||| ||| !.!....| ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 359 : roValPheLeuLysAlaGlyLysPhePheIleValAsnMetGluThrTyrMetSerIl : 377 || ! !:!!! !|||||||||||| !! :!!|||:!: |||!:!! !..!|| roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 378 : eIleLysThrSerMetSerTyrLeuSerValLeuArgValMetValThrAla : 394 |:!:|||.!!||| |||||||||||||||:!!!:!||||||:!! !||| eLeuLysAlaSerGlySerTyrLeuSerValMetLysValMetMetAspAla 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGACGCA : 807596 vulgar: gi|350415230|ref|XP_003490573.1| 280 394 . KQ414940.1 807254 807596 + 228 M 114 342 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807255 807596 228 + . gene_id 1 ; sequence gi|350415230|ref|XP_003490573.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807255 807596 . + . KQ414940.1 exonerate:protein2genome:local exon 807255 807596 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807255 807596 228 + . alignment_id 1 ; Query gi|350415230|ref|XP_003490573.1| ; Align 807255 281 342 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 318 -> 409 Target range: 807317 -> 807590 319 : IleValTyrAlaSerMetValPheAsnIlePheIlePheCysTyrIleGlyGluIleV : 338 :!!:!! !.!!!!:!!:!!.!!.!.:!:!:!:!!!:!..!||| |||.!.! !: ValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrL 807318 : GTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACAC : 807375 339 : alIleGluGlnGlyGluArgValGlyLysLysValTyrMetThrGluTrpTyrArgLe : 357 !! ..!!:! !|||..!:!!!.!:!! !.!||| :!! |||||||||! euGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCy 807376 : TCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTG : 807432 358 : uProHisLysThrAlaLeuGlyLeuValLeuValIleSerArgSerSerMetValVal : 376 !! ! ! .!!||| !! !|||:!!|||:!!||| !|||.!!!:! ! ! ! sHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyr 807433 : CCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTAT : 807489 377 : LysIleThrAlaGlyLysPheIleGlnIleSerIleThrThrPheGlyValValPheL : 396 :::||||||||||||||||||:!!! !!!:!:!:!! !|||||| !! !:!!.!.| ArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuL 807490 : CGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGA : 807549 397 : ysThrSerPheAlaTyrLeuAsnMetIleArgThrMetLeu : 409 ||.!!||| !:!!||||||::!:!:!!:!:!..!|||:!! ysAlaSerGlySerTyrLeuSerValMetLysValMetMet 807550 : AAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATG : 807590 vulgar: gi|350422520|ref|XP_003493189.1| 318 409 . KQ414940.1 807317 807590 + 146 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807318 807590 146 + . gene_id 1 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807318 807590 . + . KQ414940.1 exonerate:protein2genome:local exon 807318 807590 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807318 807590 146 + . alignment_id 1 ; Query gi|350422520|ref|XP_003493189.1| ; Align 807318 319 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350415157|ref|XP_003490551.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 343 Query range: 179 -> 394 Target range: 806514 -> 807596 180 : LeuProAspAsnLeuPhePheMetValPheIleIleGluTyrLeuMetLeuLeuPheT : 199 |||||| .!.! ! ! !! |||!!.:!::!::!! :!! :!!!!!|||! LeuProLeuGlnHisHisValCysValLeuLeuLeuGlnGlyMetHisIlePhePheA 806515 : TTACCGTTGCAGCATCACGTCTGCGTGTTACTGCTGCAAGGGATGCACATTTTCTTCA : 806572 200 : hrSerThrGlyAsnLeuGlySerAspThrLeuPhePheGlyIleIlePheHisLeuCy : 218 .!:!!..!!.!:!!! !|||!:!||| !|||||||||.!!:!:! .!.|||||||| snAlaValAlaHisCysGlyAsnAspGlyLeuPhePheSerLeuThrMetHisLeuCy 806573 : ACGCCGTGGCTCACTGCGGCAACGACGGCCTCTTCTTCAGCCTGACGATGCATCTGTG : 806629 219 : sGlyGlnValGluIleLeuArgLeuGluPheAsnArgLeuGlyAsnLysAsnGluArg : 237 ||||||| !!|||||||||!:!:!!.!..!. ..!:!!! ! !:!! ! sGlyGlnPheGluIleLeuLysMetAsnLeuAlaGluIleGluPheGluAlaIleAla 806630 : CGGTCAGTTTGAAATTCTGAAGATGAATCTGGCGGAGATCGAGTTCGAGGCGATCGCT : 806686 238 : ThrMetGluArgPheIleValLeuIleLysArgHisIleTyrLeuLeuAsnLeuAlaH : 257 ! !:!!|||.!! !||||||:!:||||||||| ! ! ||| ! |||.!!: CysArgLysArgIleGlyValLeuValLysArgHisCysLysLeuAlaValLeuThrA 806687 : TGTCGGAAGCGAATCGGCGTTCTCGTGAAACGACACTGCAAACTGGCGGTGTTGACCA : 806746 258 : isMetLeuAsnGluThrIleSerSerIleLeuValMetGlnLeuPheSerSerCysVa : 276 !! |||.!.:!!!:!.!!|||! !|||:!!:!!:!!||||||.!.! !|||...:! snAspLeuGluGlnSerPheSerMetIleIleLeuValGlnLeuMetMetSerAlaLe 806747 : ACGATCTCGAGCAGAGCTTCAGTATGATTATTCTGGTGCAACTCATGATGAGTGCGTT : 806803 277 : lLeuIleCysThrThr{G} >>>> Target Intron 1 >>>> {ly}PheGln : 284 !|||||||||..! !{|} 437 bp {||}||| uLeuIleCysValGlu{G}++ ++{ly}PheVal 806804 : GCTAATTTGCGTAGAA{G}gt.........................ag{GT}TTCGTC : 807264 285 : LeuIleLeuAspLeuSerIleGlyAsnIleValMetThrMetLysGlyPheIleValL : 304 !!!:!::!!! !||||||! !:!!! !||| .!!:!!!:!.!!|||:!!:!!: PheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuM 807265 : TTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGA : 807324 305 : euAsnAlaMetLeuValGlnLeuPheAlaTyrSerTyrValGlyAspTyrLeuThrAr : 323 !! .!!:!!|||:!!||||||!:! !|||:!!|||!.!|||:!! ||| ! etValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSe 807325 : TGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTC : 807381 324 : gGlnMetLysGlyIleSerAspSerIleTyrPheCysAsnTrpTyrAspIleSerLys : 342 !!:!! :!!! !|||:!!.!.:!! !||| !! ! !|||||| ! ! ! ! rArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGly 807382 : GCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGG : 807438 343 : SerMetAlaLysAspIleIleTyrValIleMetArgAlaGlnTyrProValPheLeuL : 362 ! |||!:!|||:!!:!!! :!!||| |||!.!.!.! ||| ! !:!!! HisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleT 807439 : CACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAA : 807498 363 : ysAlaGlyAsnPhePheIleValAsnMetGluThrTyrMetSerIleLeuLysThrSe : 381 !||||||!!.||| !! :!!|||:!: |||!:!! !..!|||||||||.!!|| hrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSe 807499 : CAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTC : 807555 382 : rMetSerTyrLeuSerValLeuArgValMetValAsnAla : 394 | |||||||||||||||:!!!:!||||||:!!:!!||| rGlySerTyrLeuSerValMetLysValMetMetAspAla 807556 : TGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGACGCA : 807596 vulgar: gi|350415157|ref|XP_003490551.1| 179 394 . KQ414940.1 806514 807596 + 343 M 102 306 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 112 336 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806515 807596 343 + . gene_id 1 ; sequence gi|350415157|ref|XP_003490551.1| ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 806515 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806515 806821 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807258 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807596 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807596 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 806515 807596 343 + . alignment_id 1 ; Query gi|350415157|ref|XP_003490551.1| ; Align 806515 180 306 ; Align 807261 283 336 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350415227|ref|XP_003490572.1| PREDICTED: odorant receptor 7a-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 367 Query range: 179 -> 392 Target range: 806514 -> 807590 180 : MetProAspAsnLeuHisPheIleValPheIleValGluTyrLeuMetLeuLeuPheL : 199 :!:||| .!.! !||| !! !|||!!.:!::!!:!! :!! :!!!!!||| LeuProLeuGlnHisHisValCysValLeuLeuLeuGlnGlyMetHisIlePhePheA 806515 : TTACCGTTGCAGCATCACGTCTGCGTGTTACTGCTGCAAGGGATGCACATTTTCTTCA : 806572 200 : euSerThrGlyAsnIleGlySerAspSerLeuPhePheGlyIleIlePheHisLeuCy : 218 !:!!..!!.!:!! !|||!:!|||.!!|||||||||.!!:!:! .!.|||||||| snAlaValAlaHisCysGlyAsnAspGlyLeuPhePheSerLeuThrMetHisLeuCy 806573 : ACGCCGTGGCTCACTGCGGCAACGACGGCCTCTTCTTCAGCCTGACGATGCATCTGTG : 806629 219 : sGlyGlnValGluIleLeuArgLeuGluPheAsnArgLeuAsnAsnGluAsnGluLys : 237 ||||||| !!|||||||||!:!:!!.!..!. ..!:!!.!. !||| sGlyGlnPheGluIleLeuLysMetAsnLeuAlaGluIleGluPheGluAlaIleAla 806630 : CGGTCAGTTTGAAATTCTGAAGATGAATCTGGCGGAGATCGAGTTCGAGGCGATCGCT : 806686 238 : AlaMetGluHisPheIleSerLeuThrLysArgHisIleTyrLeuLeuLysLeuAlaL : 257 ..! !:!!!...!! ! !|||..!||||||||| ! ! ||| ! !|||.!!! CysArgLysArgIleGlyValLeuValLysArgHisCysLysLeuAlaValLeuThrA 806687 : TGTCGGAAGCGAATCGGCGTTCTCGTGAAACGACACTGCAAACTGGCGGTGTTGACCA : 806746 258 : ysMetLeuSerGluThrIleSerSerIleLeuIleValGlnLeuPheThrSerCysIl : 276 !. |||..!:!!!:!.!!|||! !|||:!!:!:|||||||||.!.! !|||...:! snAspLeuGluGlnSerPheSerMetIleIleLeuValGlnLeuMetMetSerAlaLe 806747 : ACGATCTCGAGCAGAGCTTCAGTATGATTATTCTGGTGCAACTCATGATGAGTGCGTT : 806803 277 : eLeuIleCysThrSer{G} >>>> Target Intron 1 >>>> {ly}LeuGln : 284 :|||||||||..!..!{|} 437 bp {||}!!! uLeuIleCysValGlu{G}++ ++{ly}PheVal 806804 : GCTAATTTGCGTAGAA{G}gt.........................ag{GT}TTCGTC : 807264 285 : PheIleIleAlaLeuSerValGlyAsnIleValMetThrIleLysSerPheIleValS : 304 |||:!::!!|||||||||..! !:!!! !||| .!!:!:!:!||||||:!!:!!! PheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuM 807265 : TTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGA : 807324 305 : erSerThrLeuLeuLeuGlnLeuPheAlaTyrSerTyrValGlyGluTyrLeuLysAr : 323 ! !|||||||||:!!||||||!:! !|||:!!|||!.!|||.!. |||:!! etValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSe 807325 : TGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTC : 807381 324 : gGlnMetGluAlaValGlyAsnSerValTyrPheCysSerTrpTyrAspIleProLys : 342 !!:!! |||! !:!!!.!.!.:!!!.!||| !! ! !|||||| ! !! ! ! rArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGly 807382 : GCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGG : 807438 343 : CysValAlaLysAspIleIleTyrValIleMetArgThrGlnAspProValPheLeuL : 362 !!.!|||!:!|||:!!:!!! :!!||| ||| !.!....||| ! !:!!! HisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleT 807439 : CACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAA : 807498 363 : ysAlaGlyLysPhePheValValAsnMetGluThrTyrMetSerIleIleLysThrSe : 381 !|||||||||||| !! !:!!|||:!: |||!:!! !..!|||:!:|||.!!|| hrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSe 807499 : CAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTC : 807555 382 : rMetSerTyrLeuSerValLeuArgValMetVal : 392 | |||||||||||||||:!!!:!||||||:!! rGlySerTyrLeuSerValMetLysValMetMet 807556 : TGGCTCGTATCTGTCTGTAATGAAGGTAATGATG : 807590 vulgar: gi|350415227|ref|XP_003490572.1| 179 392 . KQ414940.1 806514 807590 + 367 M 102 306 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806515 807590 367 + . gene_id 1 ; sequence gi|350415227|ref|XP_003490572.1| ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 806515 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806515 806821 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807258 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807590 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807590 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 806515 807590 367 + . alignment_id 1 ; Query gi|350415227|ref|XP_003490572.1| ; Align 806515 180 306 ; Align 807261 283 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350415148|ref|XP_003490548.1| PREDICTED: odorant receptor 47a-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 376 Query range: 179 -> 394 Target range: 806514 -> 807596 180 : MetProAspAsnLeuTyrPheIleValPheIleIleGluCysLeuMetArgLeuLeuV : 199 :!:||| .!.! !:!! !! !|||!!.:!::!::!! ! :!! ! !!!!!!! LeuProLeuGlnHisHisValCysValLeuLeuLeuGlnGlyMetHisIlePhePheA 806515 : TTACCGTTGCAGCATCACGTCTGCGTGTTACTGCTGCAAGGGATGCACATTTTCTTCA : 806572 200 : alSerThrGlyAsnLeuGlySerAspSerLeuPhePheGlyIleThrPheHisLeuCy : 218 !:!!..!!.!:!!! !|||!:!|||.!!|||||||||.!!:!:|||.!.|||||||| snAlaValAlaHisCysGlyAsnAspGlyLeuPhePheSerLeuThrMetHisLeuCy 806573 : ACGCCGTGGCTCACTGCGGCAACGACGGCCTCTTCTTCAGCCTGACGATGCATCTGTG : 806629 219 : sGlyGlnValGluIleLeuLysLeuAspPheAsnArgLeuGlyAsnGluAsnGluArg : 237 ||||||| !!||||||||||||:!!:!!.!. ..!:!!! ! !||| ! sGlyGlnPheGluIleLeuLysMetAsnLeuAlaGluIleGluPheGluAlaIleAla 806630 : CGGTCAGTTTGAAATTCTGAAGATGAATCTGGCGGAGATCGAGTTCGAGGCGATCGCT : 806686 238 : AlaMetGluHisPheIleValLeuIleLysArgHisValTyrLeuLeuAsnLeuAlaL : 257 ..! !:!!!...!! !||||||:!:||||||||| ! ! ||| ! |||.!!! CysArgLysArgIleGlyValLeuValLysArgHisCysLysLeuAlaValLeuThrA 806687 : TGTCGGAAGCGAATCGGCGTTCTCGTGAAACGACACTGCAAACTGGCGGTGTTGACCA : 806746 258 : ysMetLeuAsnGluThrIleSerSerIleLeuIleValGlnLeuPheAlaSerCysIl : 276 !. |||.!.:!!!:!.!!|||! !|||:!!:!:|||||||||.!. !|||...:! snAspLeuGluGlnSerPheSerMetIleIleLeuValGlnLeuMetMetSerAlaLe 806747 : ACGATCTCGAGCAGAGCTTCAGTATGATTATTCTGGTGCAACTCATGATGAGTGCGTT : 806803 277 : eLeuIleCysThrThr{G} >>>> Target Intron 1 >>>> {ly}PheGln : 284 :|||||||||..! !{|} 437 bp {||}||| uLeuIleCysValGlu{G}++ ++{ly}PheVal 806804 : GCTAATTTGCGTAGAA{G}gt.........................ag{GT}TTCGTC : 807264 285 : PheIleLeuAspLeuSerValGlyAsnIleValMetAlaIleLysThrPheIleValL : 304 |||:!::!!! !||||||..! !:!!! !||| |||:!:!:!!:!|||:!!:!!: PheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuM 807265 : TTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGA : 807324 305 : euSerThrLeuLeuValGlnLeuPheAlaTyrSerTyrValGlyGluTyrLeuLysLe : 323 !! !|||||||||:!!||||||!:! !|||:!!|||!.!|||.!. |||:!!! etValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSe 807325 : TGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTC : 807381 324 : uGlnMetGluGlyValGlyAspSerValTyrPheCysSerTrpTyrAspIleProThr : 342 !!:!! |||! !:!!!.!.!.:!!!.!||| !! ! !|||||| ! !! ! ! rArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGly 807382 : GCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGG : 807438 343 : SerIleAlaLysAsnIleIleTyrValIleMetArgSerGlnAspProValSerLeuA : 362 ! !|||!:!:!!:!!:!!! :!!||| |||.!!.!....||| ! !!:!!! HisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleT 807439 : CACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAA : 807498 363 : snAlaGlyLysPhePheThrValAsnMetGluThrTyrMetSerIleLeuLysThrSe : 381 ..|||||||||||| !! !!:!!|||:!: |||!:!! !..!|||||||||.!!|| hrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSe 807499 : CAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTC : 807555 382 : rMetSerTyrLeuSerValLeuArgValMetValAsnAla : 394 | |||||||||||||||:!!!:!||||||:!!:!!||| rGlySerTyrLeuSerValMetLysValMetMetAspAla 807556 : TGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGACGCA : 807596 vulgar: gi|350415148|ref|XP_003490548.1| 179 394 . KQ414940.1 806514 807596 + 376 M 102 306 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 112 336 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806515 807596 376 + . gene_id 1 ; sequence gi|350415148|ref|XP_003490548.1| ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 806515 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806515 806821 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807258 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807596 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807596 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 806515 807596 376 + . alignment_id 1 ; Query gi|350415148|ref|XP_003490548.1| ; Align 806515 180 306 ; Align 807261 283 336 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350415235|ref|XP_003490575.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 209 Query range: 280 -> 393 Target range: 807254 -> 807593 281 : SerGlyLeuGlnPheIleLeuAlaLeuSerIleGlyAsnIleValMetAlaValLysT : 300 !!!|||!!! |||:!::!!|||||||||! !:!!! !||| |||:!!!:!! ThrGlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgS 807255 : ACAGGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGA : 807312 301 : hrPheMetValLeuThrAlaLeuMetValGlnLeuPheAlaTyrSerTyrValGlyGl : 319 :!|||:!::!!:!!..!.!!|||:!!:!!||||||!:! !|||:!!|||!.!|||.! erPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807313 : GCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 320 : uTyrLeuArgArgGlnMetGluGlyIleGlyAspSerMetTyrPheCysAsnTrpTyr : 338 . |||..! !!:!! |||! !|||!.!.!.:!! ||| !! ! !|||||| nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 339 : AspIleProLysSerValAlaLysAspIleIleTyrValIleMetArgAlaGlnGluP : 358 ! !! ! ! !!.!|||!:!|||:!!:!!! :!!||| |||!.!.!...!| ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 359 : roValPheLeuArgAlaGlyGlnPheLeuValValAsnMetGluThrTyrThrSerIl : 377 || ! !:!!! !||||||:!!|||:!! !:!!|||:!: |||!:!! !..!|| roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 378 : eIleLysThrSerMetSerTyrLeuSerValLeuArgValMetValAsn : 393 |:!:|||.!!||| |||||||||||||||:!!!:!||||||:!!:!! eLeuLysAlaSerGlySerTyrLeuSerValMetLysValMetMetAsp 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: gi|350415235|ref|XP_003490575.1| 280 393 . KQ414940.1 807254 807593 + 209 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807255 807593 209 + . gene_id 1 ; sequence gi|350415235|ref|XP_003490575.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807255 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807255 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807255 807593 209 + . alignment_id 1 ; Query gi|350415235|ref|XP_003490575.1| ; Align 807255 281 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350417424|ref|XP_003491416.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 279 -> 381 Target range: 807266 -> 807578 280 : PheGlnIleThrSerMetMetLysAspLysGlyArgLeuMetLysTyrSerThrPheL : 299 |||! !:!!.!! !! ! !||||||!!.! ! ! !:!!!:! !! !..!.!.: PheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuM 807267 : TTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGA : 807324 300 : euAsnSerAlaIleLeuGluLeuPheMetPheSerPheSerGlyAsnGlyLeuIleAs : 318 !! !!! !:!::!!:!!|||!:!:!:!:!:!!!:!:!!|||||| !||| .. etValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSe 807325 : TGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTC : 807381 319 : pGluSerGlyAlaValGlyAspSerAlaTyrGlySerGlyTrp<-><->IleGlySer : 335 ...!!!!! !! !:!!!.!.!.:!!||||||! !||| !||| ! !.!! rArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGly 807382 : GCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGG : 807438 336 : ArgPheSerGlnSerLeuGlnIleMetMetMetArgAlaArgIleProSerLysIleT : 355 !.! :!!::!..!|||! :!:!!:!!: |||!.!!.! |||! !:::|||| HisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleT 807439 : CACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAA : 807498 356 : hrAlaAlaLysPheTyrAlaMetSerLeuGluSerPheSerAlaValLeuSerThrSe : 374 |||||!.!|||||| ! !!|||!:!||| !!!|||!.!! !:!!|||!.!.!!|| hrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSe 807499 : CAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTC : 807555 375 : rPheSerTyrPheThrValLeu : 381 | !||||||.!.:!!|||:!! rGlySerTyrLeuSerValMet 807556 : TGGCTCGTATCTGTCTGTAATG : 807578 vulgar: gi|350417424|ref|XP_003491416.1| 279 381 . KQ414940.1 807266 807578 + 111 M 53 159 G 0 6 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807267 807578 111 + . gene_id 1 ; sequence gi|350417424|ref|XP_003491416.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807267 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807267 807578 . + . insertions 6 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807267 807578 111 + . alignment_id 1 ; Query gi|350417424|ref|XP_003491416.1| ; Align 807267 280 159 ; Align 807432 333 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 299 -> 410 Target range: 807260 -> 807593 300 : TyrTyrCysMetMetGluTrpGlnAsnSerAspAlaIleAlaIleLeuThrTyrValT : 319 !:! !! !:!!:!:! !...!..!.!||| !:!!||| !|||! ! ! !!. PheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheV 807261 : TTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCG : 807318 320 : hrLeuLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLe : 338 .!|||:!!:!:!!!!!. !.!!.!.:!:!:!:!!!:!..!||| |||.!.! !|| alLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLe 807319 : TTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACT : 807375 339 : uThrGluGlnCysSerGlnIleGlyIleThrSerTyrGluIleGluTrpTyrGlnLeu : 357 | !..!!:! !..!:!!|||!.! !.!!:!!|||!!: ! ||||||!::! ! uGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCys 807376 : CGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGC : 807432 358 : ProAlaLysLysAlaTyrAspLeuIleLeuLeuIleSerIleSerHisTyrProProL : 377 ! !!.! ! !||| ||||||:!!|||:!!||| ! !.!!:!!! ||| !: HisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrA 807433 : CACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATC : 807492 378 : ysLeuThrAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSerSerValAlaLy : 396 :::!!||||||||||||.!!:!! !:!!!:!||| !||||||!.!..!:!! !|| rgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLy 807493 : GTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAA : 807549 397 : sSerSerValIleTyrLeuAsnLeuLeuArgThrValThrAsp : 410 |:!!|||! ! ||||||::!:!!:!!!:!..!:!!! !||| sAlaSerGlySerTyrLeuSerValMetLysValMetMetAsp 807550 : AGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: gi|350412763|ref|XP_003489754.1| 299 410 . KQ414940.1 807260 807593 + 159 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807261 807593 159 + . gene_id 1 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807261 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807261 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807261 807593 159 + . alignment_id 1 ; Query gi|350412763|ref|XP_003489754.1| ; Align 807261 300 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 314 -> 402 Target range: 807317 -> 807581 315 : MetLeuLeuAlaSerIleCysPheAsnIlePheValIleCysTyrIleGlyGluThrL : 334 :!:|||:!!!.!!!!:!: .!!.!.:!:!:!:!! !..!||| |||.!.|||| ValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrL 807318 : GTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACAC : 807375 335 : euThrGluGlnSerArgLysValGlyAspValValTyrMetAlaAsnTrpTyrTyrLe : 353 || !..!!:!!!!..!:!!:!!!.!.!.!.!!.!||| :!! !|||||| !! euGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCy 807376 : TCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTG : 807432 354 : uThrGluLysArgIleLeuGluLeuIleLeuIleIleMetArgSerSerValValVal : 372 ! !! ! ! ! ! !!!:|||:!!||||||||| |||.!!!:! ! ! ! sHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyr 807433 : CCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTAT : 807489 373 : GluIleThrAlaGlyLysIleIleHisMetSerIleGlnThrPheSerThrValIleL : 392 ...|||||||||||||||.!!:!!! |||!:!:!! ||||||!.! !:!!:!:| ArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuL 807490 : CGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGA : 807549 393 : ysThrAlaPheThrTyrLeuAsnLeuLeuArg : 402 ||.!!:!! !:!!||||||::!:!!:!!!:! ysAlaSerGlySerTyrLeuSerValMetLys 807550 : AAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: gi|350422503|ref|XP_003493183.1| 314 402 . KQ414940.1 807317 807581 + 133 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807318 807581 133 + . gene_id 1 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807318 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807318 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807318 807581 133 + . alignment_id 1 ; Query gi|350422503|ref|XP_003493183.1| ; Align 807318 315 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350415237|ref|XP_003490576.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 1369 Query range: 2 -> 399 Target range: 805808 -> 807593 3 : GluLysValAlaIleGluGluTyrValArgAsnPheLeuValGlnGluThrLeuLeuL : 22 |||:!! !:!! !|||:!! !!.!|||.!.||||||||||||||||||:!!|||! GluGluAsnSerGlyGluLysIleAlaArgGluPheLeuValGlnGluThrValLeuA 805809 : GAGGAGAATTCGGGCGAGAAGATCGCTCGCGAGTTCCTCGTGCAGGAAACGGTGTTGA : 805866 23 : ysValValGlyIleTrpProThr<-><->ArgAsnGlySerSerPheGlyArgTrpIl : 39 :!:!!:!!||||||||||||!:! !.!||| !:!!|||.!!|||||||||! rgIleIleGlyIleTrpProSerSerValAsnAsnPheAlaSerIleGlyArgTrpTh 805867 : GAATAATCGGGATTTGGCCGAGCAGCGTTAACAATTTCGCGTCCATCGGTCGATGGAC : 805923 40 : ePheAlaMetMetThrGln >>>> Target Intron 1 >>>> IleSerThrI : 49 ||||||!!::!!|||!!. 72 bp |||||||||| rPheAlaIleLeuThrHis++ ++IleSerThrI 805924 : GTTCGCCATCTTGACGCATgt.........................agATCAGTACTA : 806025 50 : leTyrSerLeuSerLeuGluValTyrArgHisCysLeuAspIleAspAspThrMetAs : 68 |||||||||||||||||||||||||||||||||||||||||:!!|||||||||||||| leTyrSerLeuSerLeuGluValTyrArgHisCysLeuAspLeuAspAspThrMetAs 806026 : TCTACAGCCTGTCTCTCGAAGTCTATCGTCATTGTCTGGACCTCGACGACACGATGGA : 806082 69 : pAlaPheValMetAspLeuSerSerIleValSerLeuAlaLysLeuPheIleMetArg : 87 |||||||||||||||||||||||||:!::!!||||||:!!||||||.!!:!!:!:||| pAlaPheValMetAspLeuSerSerValIleSerLeuSerLysLeuLeuValLeuArg 806083 : CGCGTTCGTCATGGATCTGTCGTCGGTGATCAGTCTGTCCAAGCTGCTCGTTTTACGG : 806139 88 : ArgAsnSerLysHisAlaTyrValLeuIleAsnSerValLeuLysAspTrpSerAlaV : 107 ! !!!.|||||||||.!!|||!.!|||:!!:!!|||:!!:!!|||||||||!!! !| MetLysSerLysHisThrTyrAlaLeuValAspSerIleValLysAspTrpThrAsnV 806140 : ATGAAATCGAAACACACTTACGCTCTCGTCGATTCGATCGTCAAAGACTGGACGAACG : 806199 108 : alAspAspSerArgHisGluAspIleMetThrLysTyrTyrLysArgGlyArgIleVa : 126 ||||| !!|||||||||||| !|||||||||:!!|||!:!!!.!:!||||||||||| alAspHisSerArgHisGluArgIleMetThrGluTyrPheAsnLysGlyArgIleVa 806200 : TCGATCATTCCCGCCACGAACGCATCATGACGGAGTACTTCAACAAAGGAAGAATCGT : 806256 127 : lSerLeuThrIleLeuTyrLeuGlyTyrAlaSerGlyLeuSerPheIleValLysAla : 145 ||||||||||||||||||||||||||||||||||||||||||||||:!!:!!|||||| lSerLeuThrIleLeuTyrLeuGlyTyrAlaSerGlyLeuSerPheValLeuLysAla 806257 : TTCGTTGACGATACTCTACCTTGGATACGCCTCTGGACTGTCTTTCGTTCTCAAAGCC : 806313 146 : LeuProPheGlyGluIleLeuProPheLys >>>> Target Intron 2 >>>> : 156 ||||||!!. .!.:!!|||||||||:!! 82 bp LeuProLeu---HisLeuLeuProPheGln++ + 806314 : CTGCCTTTG---CACCTTCTACCCTTCCAGgt.........................a : 806423 157 : MetPheGlnAsnSerAlaAsnSerSerAlaAsnLeuLysGlySerLeuGluMetAsn : 174 ! !.!!!!.!:!!!!|||||||||!!!!.!||| !!!.! !!!! !...:::||| +LysLeuHisSerTrpAlaAsnSerThrValAsnThrAsnAspThrAlaArgLeuAsn 806424 : gAAGCTCCACAGTTGGGCGAATTCAACGGTGAACACGAACGATACAGCGagattgaat : 806479 175 : TyrPheLeuAlaSerTyrCysValPheGlySerLeuProLeuLeuGlnArgIleCysV : 194 ||||||||||||!!!:!!|||||||||||| !!|||||||||! !!!.!.!:!!|||| TyrPheLeuAlaThrHisCysValPheGlyProLeuProLeuGlnHisHisValCysV 806480 : tatttcttgGCCACGCACTGCGTGTTCGGCCCTTTACCGTTGCAGCATCACGTCTGCG : 806539 195 : alLeuIleLeuGlnAlaMetHisIlePheValAsnAlaValAlaHisCysAlaAsnAs : 213 |||||:!:||||||!.!|||||||||||| !!||||||||||||||||||!.!||||| alLeuLeuLeuGlnGlyMetHisIlePhePheAsnAlaValAlaHisCysGlyAsnAs 806540 : TGTTACTGCTGCAAGGGATGCACATTTTCTTCAACGCCGTGGCTCACTGCGGCAACGA : 806596 214 : pGlyLeuPhePheSerLeuThrMetHisLeuCysGlyGlnPheGluValLeuLysMet : 232 ||||||||||||||||||||||||||||||||||||||||||||||:!!||||||||| pGlyLeuPhePheSerLeuThrMetHisLeuCysGlyGlnPheGluIleLeuLysMet 806597 : CGGCCTCTTCTTCAGCCTGACGATGCATCTGTGCGGTCAGTTTGAAATTCTGAAGATG : 806653 233 : AsnPheAsnLysPheGluLeuGlnGlnPheGlyCysHisLysArgLeuArgPheLeuV : 252 |||.!. :!!.!!|||!!!:!! !.!!!.!|||!..||||||:!! !! !!|||| AsnLeuAlaGluIleGluPheGluAlaIleAlaCysArgLysArgIleGlyValLeuV 806654 : AATCTGGCGGAGATCGAGTTCGAGGCGATCGCTTGTCGGAAGCGAATCGGCGTTCTCG : 806713 253 : alLysArgHisCysGlnLeuLeuMetLeuAlaAsnAspLeuGluGlnThrPheAsnMe : 271 ||||||||||||||:!!||| !:!!|||.!!|||||||||||||||!:!|||!:!|| alLysArgHisCysLysLeuAlaValLeuThrAsnAspLeuGluGlnSerPheSerMe 806714 : TGAAACGACACTGCAAACTGGCGGTGTTGACCAACGATCTCGAGCAGAGCTTCAGTAT : 806770 272 : tIleIleLeuValGlnLeuLeuMetSerAlaLeuLeuIleCysValGlu{G} >>>> : 288 |||||||||||||||||||:!!|||||||||||||||||||||||||||{|} tIleIleLeuValGlnLeuMetMetSerAlaLeuLeuIleCysValGlu{G}++ 806771 : GATTATTCTGGTGCAACTCATGATGAGTGCGTTGCTAATTTGCGTAGAA{G}gt.... : 806824 289 : Target Intron 3 >>>> {ly}PheValPheLeuValCysLeuAlaThrArgA : 299 437 bp {||}|||||||||||||||..!|||::!|||!:!| ++{ly}PheValPheLeuValAlaLeuSerThrLysA 806825 : .....................ag{GT}TTCGTCTTCCTGGTCGCTCTGAGCACGAAGG : 807291 300 : spAsnValGlyAlaLeuLysSerValIleLeuMetValThrLeuLeuIleGlnLeuTy : 318 ||||||||!.!||||||!:!||| !!:!!||||||||||||||||||||||||||||| spAsnValAlaAlaLeuArgSerPheValLeuMetValThrLeuLeuIleGlnLeuTy 807292 : ACAACGTTGCAGCATTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTA : 807348 319 : rLeuTyrAlaTyrAlaGlyAspValLeuGluSerArgSerAsnGluIleAlaHisGly : 337 |||||||||||||||||||:!!..!||||||||||||!!!.!.|||||||||!!.!.! rLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluIleAlaGlnAla 807349 : CCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCC : 807405 338 : ValTyrAspSerProTrpTyrGlnProArgGlyHisValAlaArgAspLeuMetMetI : 357 !.!|||||||||! !||||||!:: !!.!||||||!.!||||||||||||:!::!!| AlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuI 807406 : GCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGA : 807465 358 : leIleAsnArgGlyHisArgSerTyrHisValThrAlaGlyLysPheLeuSerMetAs : 376 |||||:!!||||||:!! ! !!|||!.!:!!|||||||||||||||:!! !!||||| leIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheValProMetAs 807466 : TCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAA : 807522 377 : nIlePheThrPheLysGluIleLeuArgSerSerAlaSerTyrLeuSerValLeuLys : 395 |:!!|||||||||||||||||||||!:!:!!|||!.!|||||||||||||||:!!||| nLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSerValMetLys 807523 : TCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807579 396 : ValMetMetAsp : 399 |||||||||||| ValMetMetAsp 807580 : GTAATGATGGAC : 807593 vulgar: gi|350415237|ref|XP_003490576.1| 2 399 . KQ414940.1 805808 807593 + 1369 M 27 81 G 0 6 M 16 48 5 0 2 I 0 68 3 0 2 M 103 309 G 1 0 M 6 18 5 0 2 I 0 78 3 0 2 M 132 396 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 805809 807593 1369 + . gene_id 1 ; sequence gi|350415237|ref|XP_003490576.1| ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 805809 805943 . + . KQ414940.1 exonerate:protein2genome:local exon 805809 805943 . + . insertions 6 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 805944 805945 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 805944 806015 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 806014 806015 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 806016 806342 . + . KQ414940.1 exonerate:protein2genome:local exon 806016 806342 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local splice5 806343 806344 . + . intron_id 2 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806343 806424 . + . intron_id 2 KQ414940.1 exonerate:protein2genome:local splice3 806423 806424 . + . intron_id 1 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 806425 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806425 806821 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 3 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807258 . + . intron_id 3 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 2 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 805809 807593 1369 + . alignment_id 1 ; Query gi|350415237|ref|XP_003490576.1| ; Align 805809 3 81 ; Align 805896 30 48 ; Align 806016 46 309 ; Align 806325 150 18 ; Align 806425 156 396 ; Align 807261 289 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 295 -> 403 Target range: 807257 -> 807581 296 : GlyTyrTyrIleLeuThrGluTrpAlaGluHisAspIleArgAsnLeuThrThrTyrP : 315 |||!:! !.!!|||..!! !::! ! ! |||! ! ! ! !! ! !| GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 316 : heMetIleMetAlaSerMetSerPheAsnIlePheThrValCysTyrIleGlyAspIl : 334 ||:!::!:|||!.!!!!:!! !.!!.!.:!:!:! ! !..!||| |||:!!! heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 335 : eLeuThrGluGlnSerLysLysPheGlyAspValValTyrMetThrLysTrpTyrTyr : 353 !||| !..!!:!!!!:!!:!!.!!!.!.!.!.!!.!||| :!! |||||| ! rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 354 : LeuProAsnLysAspIlePheAspLeuIleLeuIleIleThrArgSerAsnSerAlaI : 373 ! !! !... ! ! ! ||||||:!!||||||||| !|||.!!|||||| !! CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 374 : leLysIleThrAlaGlyLysIleThrHisMetSerIleAsnThrPheGlyAspValMe : 392 !:::|||||||||||||||.!!..!! |||!:!:!! !|||||| !!!::!!:! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 393 : tLysThrAlaPheAlaTyrLeuAsnLeuLeuArg : 403 !|||.!!:!! !:!!||||||::!:!!:!!!:! uLysAlaSerGlySerTyrLeuSerValMetLys 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: gi|350422500|ref|XP_003493182.1| 295 403 . KQ414940.1 807257 807581 + 148 M 108 324 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807581 148 + . gene_id 1 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807581 148 + . alignment_id 1 ; Query gi|350422500|ref|XP_003493182.1| ; Align 807258 296 324 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 294 -> 404 Target range: 807257 -> 807587 295 : GlyTyrTyrIleLeuSerGluTrpAlaAspGlnAspIleGlnAsnLeuIleThrTyrP : 314 |||!:! !.!!||| !! !::! :!!|||! ! !:!:! ! !| GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 315 : heMetMetLeuIleSerIleCysPheAspIlePheValIleCysTyrIleSerGluIl : 333 ||:!::!!:!!:!:!!!:!: .!!.!.:!:!:!:!! !..!||| .!!.!.! heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 334 : eLeuThrGluGlnCysGlnLysValGlyGluValValTyrMetThrAsnTrpTyrTyr : 352 !||| !..!!:! !:!!:!!:!!!.!:!!!.!!.!||| :!! !|||||| ! rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 353 : LeuProAsnLysValIleLeuAspLeuIleLeuIleIleAlaArgSerSerThrValV : 372 ! !! !... ! !.! ! !||||||:!!||||||||| !|||.!!!:!:!! ! CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 373 : alHisLeuThrAlaGlyLysPheIleGlnMetSerValTyrThrPheGlyAsnValLe : 391 !!.!:!!|||||||||||||||:!!! !|||!:!:!!!:!|||||| !.!.:!!|| yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 392 : uLysThrGlyPheAlaTyrLeuAsnMetLeuGlnGlnMet : 404 ||||.!!..! !:!!||||||::!:!::!!:!! !||| uLysAlaSerGlySerTyrLeuSerValMetLysValMet 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: gi|350422517|ref|XP_003493188.1| 294 404 . KQ414940.1 807257 807587 + 157 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807587 157 + . gene_id 1 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807587 157 + . alignment_id 1 ; Query gi|350422517|ref|XP_003493188.1| ; Align 807258 295 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 448 Query range: 267 -> 406 Target range: 5518 -> 4085 268 : AsnPheIleSerCysIleGluAspValMetAsnArgIleTyrPheLeuGluMetPheArgCy : 288 !:!||||||||| !!:!!|||! :!!||||||!:! ! !|||||||||:!:.!.||||| SerPheIleSerArgLeuGluAlaMetMetAsnLysAlaCysPheLeuGluLeuMetArgCy 5518 : AGCTTCATATCGCGCTTAGAGGCAATGATGAACAAAGCGTGTTTCCTGGAGTTAATGAGGTG : 5458 289 : sThrMetAspIleCysValIleGlyTyrTyrIleLeuSer >>>> Target Intron 1 : 302 |||||||! !||||||!.!|||||||||||||||!!!! ! 835 bp sThrMetAlaIleCysAlaIleGlyTyrTyrIlePheMet++ 5457 : CACGATGGCTATTTGCGCAATTGGATATTATATATTCATGgt.................... : 5414 303 : >>>> GluTrpAlaAspArgAspIleGlnAsnLeuPheThrTyrPheMetMetLeuIleS : 320 ||||||.!!!!:!!!||| !|||! ||||||||||||.!!:!:! |||:!!: ++GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValA 5413 : .....agGAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTG : 4527 321 : erIleCysPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluGln >>>> : 339 !!:!! ! ||| |||:::||||||||||||.!!!!:! |||||||||||| laValValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4526 : CTGTTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt.... : 4468 340 : Target Intron 2 >>>> CysGlnLysValGlyGluValValTyrMetThrAsnTrp : 351 92 bp ||| !|||||||||||||||||||||||||||:!!||| ++CysLeuLysValGlyGluValValTyrMetThrAspTrp 4467 : .....................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGG : 4342 352 : TyrTyrLeuProAspLysIleIleLeuAspLeuIleLeuIleIleAlaArgSerSerMetVa : 372 ||||||||||||.!.!:!! !||||||||||||||||||||||||.!!||||||!:!:!!|| TyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValVa 4341 : TATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGT : 4279 373 : lValHisIleThrAlaGlyLysLeuValHisMetSerValTyrThrPheGlyAsp >>>> : 391 ||||.!.|||||||||||||||::: |||||||||:!!||||||||||||||| lValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4278 : CGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt..... : 4220 392 : Target Intron 3 >>>> ValValLysThrGlyPheAlaTyrLeuAsnLeuLeuArgG : 404 89 bp ||||||||||||||||||||||||||||||:!!||| !!| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysG 4219 : ....................agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTC : 4094 405 : lnMetThr : 406 |||||:!! lnMetSer 4093 : AAATGTCC : 4086 vulgar: gi|350422508|ref|XP_003493185.1| 267 406 . LHQN01027980.1 5518 4085 - 448 M 34 102 5 0 2 I 0 831 3 0 2 M 37 111 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4086 5518 448 - . gene_id 1 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 5417 5518 . - . LHQN01027980.1 exonerate:protein2genome:local exon 5417 5518 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 5415 5416 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4582 5416 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4582 4583 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4471 4581 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4581 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 2 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 2 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 1 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4223 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 3 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 3 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 2 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4086 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4086 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4086 5518 448 - . alignment_id 1 ; Query gi|350422508|ref|XP_003493185.1| ; Align 5519 268 102 ; Align 4582 302 111 ; Align 4379 339 156 ; Align 4134 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 409 Query range: 1 -> 162 Target range: 489 -> 12 2 : ThrAsnGluProValIleThrGluGlyAspSerAsnSerAsnSerAspTyrSerLeuGlnLeuA : 23 !.!:!!:!! !!|||:!!|||||| !:!!! !!.!:!!!:!||||||||||||||||||! !| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpA 489 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGA : 426 24 : snArgTrpPheLeuLysProIleGlyAlaTrpProSerSerSerSerThrThrArgLeuGluLy : 44 |||||||| :!!||| !||||||.!!||||||..!! !|||||| !.!||||||!: snArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSer------AsnLeuGluAr 425 : ATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCG------AACCTCGAGAG : 369 45 : sIleValSerPheIleLeuAsnIleIleCysPheThrSerValIleValThrAlaIleProSer : 65 !! !:!!||| |||||||||:!:||||||!:!|||:!!:!!:!! !!:!! !||||||!!! gAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCys 368 : AAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGT : 306 66 : LeuLeuLeuMetIleLeuGluAspGluSerIleTyrMetLysLeuLysThrLeuGlyProValS : 87 ! !|||! !:!:!!:|||||| ! ! !!!!.!!|||! !|||:!!|||! !|||||||||:!!| SerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyProLeuS 305 : TCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGA : 240 88 : erHisTrpPheValSerSerAlaAsnTyrThrAlaLeuLeuIleArgGlyArgAspIleArgHi : 108 |||||||| ! !!!!!! ! !!:!|||||| !||||||:!:||| !!!:! !|||!.!|| erHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHi 239 : GCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCA : 177 109 : sCysValGluHisIleGluAlaAspTrpArgThrValThrArgGluGluAspGlnHisValMet : 129 |! !|||.!.|||!!:|||.!!||||||||||||..!||||||:::||| :::...|||||| sPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMet 176 : CTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATG : 114 130 : MetLysAsnAlaLysPheGlyArgTyrValAlaAlaSerCysAlaValPheMetGlnGlyGlyV : 151 :!!||| !!|||||||||.!!||||||!.!||| !! !||||||:!!|||!!:!!.||||||: LeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyI 113 : CTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTA : 48 152 : alLeuCysPheCysPheValThrAlaLeuThrThr : 162 !!||| ! !:!||| !!:!!||||||! !|||||| leLeuGlyTyrCysValMetThrAlaSerThrThr 47 : TACTTGGATATTGTGTTATGACAGCGTCCACCACG : 13 vulgar: gi|350422508|ref|XP_003493185.1| 1 162 . LHQN01027980.1 489 12 - 409 M 37 111 G 2 0 M 122 366 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 13 489 409 - . gene_id 2 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 13 489 . - . LHQN01027980.1 exonerate:protein2genome:local exon 13 489 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 13 489 409 - . alignment_id 2 ; Query gi|350422508|ref|XP_003493185.1| ; Align 490 2 111 ; Align 379 41 366 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 337 -> 391 Target range: 1990 -> 1822 338 : GlnCysGlnLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAspLysIl : 358 :!! ! |||||||||! ! !||||||||||||.!.|||||| ||| !!.!.|||! GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysTh 1990 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAAC : 1930 359 : eIleLeuAspLeuIleLeuIleIleAlaArgSerSerMetValValHisIleThrAlaGlyL : 379 ! !|||! !!!!:!!:!!||||||:!!|||||||||||||||:!! ! ||||||||||||| rAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyL 1929 : TGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAA : 1867 380 : ysLeuValHis<-><->MetSerValTyrThrPheGlyAspVal : 391 ||!!!|||:!! !|||||| ||||||||||||||| ysPheValTyr***ThrSerSerValAlaThrPheGlyAspVal 1866 : AATTCGTATACTGAACATCGTCTGTCGCAACATTTGGCGATGTG : 1823 vulgar: gi|350422508|ref|XP_003493185.1| 337 391 . LHQN01027980.1 1990 1822 - 131 M 45 135 G 0 6 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1823 1990 131 - . gene_id 3 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1823 1990 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1823 1990 . - . insertions 6 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1823 1990 131 - . alignment_id 3 ; Query gi|350422508|ref|XP_003493185.1| ; Align 1991 338 135 ; Align 1850 383 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 406 Query range: 266 -> 405 Target range: 5518 -> 4085 267 : AsnPheIleSerCysIleGluAspValMetPheLysIleTyrPheValGluMetPheArgSe : 287 !:!||||||||| !!:!!|||! :!!||| !||| ! !|||:!!|||:!:.!.|||!! SerPheIleSerArgLeuGluAlaMetMetAsnLysAlaCysPheLeuGluLeuMetArgCy 5518 : AGCTTCATATCGCGCTTAGAGGCAATGATGAACAAAGCGTGTTTCCTGGAGTTAATGAGGTG : 5458 288 : rThrMetAspIleCysValIleGlyTyrTyrIleLeuSer >>>> Target Intron 1 : 301 !||||||! !||||||!.!|||||||||||||||!!!! ! 835 bp sThrMetAlaIleCysAlaIleGlyTyrTyrIlePheMet++ 5457 : CACGATGGCTATTTGCGCAATTGGATATTATATATTCATGgt.................... : 5414 302 : >>>> GluTrpAlaAspGlnAspIleGlnAsnLeuIleThrTyrPheMetMetLeuIleS : 319 ||||||.!!!!:...||| !|||! |||.!!||||||.!!:!:! |||:!!: ++GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValA 5413 : .....agGAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTG : 4527 320 : erIleCysPheAspIlePheValIleCysTyrIleSerGluIleLeuThrGluGln >>>> : 338 !!:!! ! ::: |||:::|||||||||||||||!!:! |||||||||||| laValValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4526 : CTGTTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt.... : 4468 339 : Target Intron 2 >>>> CysGlnLysValGlyGluValValTyrMetThrAsnTrp : 350 92 bp ||| !|||||||||||||||||||||||||||:!!||| ++CysLeuLysValGlyGluValValTyrMetThrAspTrp 4467 : .....................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGG : 4342 351 : TyrTyrLeuProAsnLysValIleLeuAspLeuIleLeuIleIleAlaArgSerSerThrVa : 371 ||||||||||||.!.!:! !||||||||||||||||||||||||.!!||||||!:!..!|| TyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValVa 4341 : TATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGT : 4279 372 : lValHisLeuThrAlaGlyLysPheIleGlnMetSerValTyrThrPheGlyAsn >>>> : 390 ||||.!.:!!||||||||||||.........||||||:!!||||||||||||:!! lValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4278 : CGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt..... : 4220 391 : Target Intron 3 >>>> ValLeuLysThrGlyPheAlaTyrLeuAsnMetLeuGlnG : 403 89 bp |||:!!|||||||||||||||||||||||||||||| | ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysG 4219 : ....................agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTC : 4094 404 : lnMetThr : 405 |||||:!! lnMetSer 4093 : AAATGTCC : 4086 vulgar: gi|350422517|ref|XP_003493188.1| 266 405 . LHQN01027980.1 5518 4085 - 406 M 34 102 5 0 2 I 0 831 3 0 2 M 37 111 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4086 5518 406 - . gene_id 1 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 5417 5518 . - . LHQN01027980.1 exonerate:protein2genome:local exon 5417 5518 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 5415 5416 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4582 5416 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4582 4583 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4471 4581 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4581 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 2 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 2 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 1 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4223 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 3 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 3 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 2 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4086 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4086 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4086 5518 406 - . alignment_id 1 ; Query gi|350422517|ref|XP_003493188.1| ; Align 5519 267 102 ; Align 4582 301 111 ; Align 4379 338 156 ; Align 4134 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 342 Query range: 3 -> 163 Target range: 483 -> 9 4 : GluAlaValIleValGluSerAspSerAsnSerAsnSerAspTyrSerLeuGlnLeuAsnArgT : 25 :!!.!!|||:!!..!|||! !:!!! !!.!:!!!:!||||||||||||||||||! !||||||| LysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgT 483 : AAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGAT : 420 26 : rpPheLeuGlnSerIleGlyAlaTrpProSerSerAlaSerThrThrLysLeuGluLysIleVa : 46 || :!!:!!|||||||||.!!||||||..!! !:!!||| !!.||||||!:!! !:! rpAlaMetLysSerIleGlyThrTrpProGlnPheSerSer------AsnLeuGluArgAsnIl 419 : GGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCG------AACCTCGAGAGAAACAT : 363 47 : lSerPheIleLeuAsnIleValCysLeuSerIleValIleLeuAlaValIleProSerLeuLeu : 67 !||| |||||||||:!::!!|||! !!!! !:!!:!!!!!:!!:!!||||||!!!! !||| eSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeu 362 : CTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTG : 300 68 : LeuMetIleLeuGlyAspGluSerPheAsnPheLysLeuLysMetPheGlyTyrValSerHisT : 89 ! !:!:!!:|||! ! ! ! !!!!||| !! |||:!!|||!!:.!!||| :!!||||||| HisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyProLeuSerHisT 299 : CACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACT : 234 90 : rpIlePheSerGlyIleAsnTyrThrAlaLeuLeuThrHisGlyLysAsnIleArgGlnCysIl : 110 ||:!:|||!!! !|||!:!|||||| !|||||| !!.. !!|||!.!|||!.!!!.! !:! rpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPheVa 233 : GGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTTTGT : 171 111 : eGluHisIleGluAlaAspTrpArgThrValThrArgGluGluAspLysAsnValMetLeuLys : 131 !.!.|||!!:|||.!!||||||||||||..!||||||:::||| |||...|||||||||||| lAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLys 170 : CAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGCTGAAG : 108 132 : AsnAlaLysLeuGlyArgTyrIleAlaGlyPheSerValIlePheValGlnGlySerValLeuC : 153 !!||||||!!!.!!|||||| ||| !|||!!!!.!||||||:!!!!.|||.!!:!!||| TyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleLeuG 107 : TACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTATACTTG : 42 154 : ysPhePhePheAlaAlaAlaLeuSerThrVal : 163 ! !:!! ! !! !.!!|||! !!!!|||:!! lyTyrCysValMetThrAlaSerThrThrMet 41 : GATATTGTGTTATGACAGCGTCCACCACGATG : 10 vulgar: gi|350422517|ref|XP_003493188.1| 3 163 . LHQN01027980.1 483 9 - 342 M 35 105 G 2 0 M 123 369 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 10 483 342 - . gene_id 2 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 10 483 . - . LHQN01027980.1 exonerate:protein2genome:local exon 10 483 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 10 483 342 - . alignment_id 2 ; Query gi|350422517|ref|XP_003493188.1| ; Align 484 4 105 ; Align 379 41 369 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 336 -> 380 Target range: 1990 -> 1858 337 : GlnCysGlnLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAsnLysVa : 357 :!! ! |||||||||! ! !||||||||||||.!.|||||| ||| !!.!.|||.. GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysTh 1990 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAAC : 1930 358 : lIleLeuAspLeuIleLeuIleIleAlaArgSerSerThrValValHisLeuThrAlaGlyL : 378 ! !|||! !!!!:!!:!!||||||:!!|||||||||! !|||:!! ! :!!|||||||||| rAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyL 1929 : TGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAA : 1867 379 : ysPheIle : 380 |||||:!! ysPheVal 1866 : AATTCGTA : 1859 vulgar: gi|350422517|ref|XP_003493188.1| 336 380 . LHQN01027980.1 1990 1858 - 121 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1859 1990 121 - . gene_id 3 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1859 1990 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1859 1990 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1859 1990 121 - . alignment_id 3 ; Query gi|350422517|ref|XP_003493188.1| ; Align 1991 337 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 400 Query range: 1 -> 165 Target range: 489 -> 3 2 : ThrAsnLysSerAlaValValGluLysThrPheAspSerLeuGlyAspTyrSerLeuGlnPheA : 23 !.!:!!|||!!!!.!|||..!|||! !.!.!. !:!! !.!!|||||||||||||||!::| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpA 489 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGA : 426 24 : snArgTrpLeuLeuIleSerIleGlyAlaTrpProAlaSerThrSerThrSerArgArgGluAr : 44 |||||||| !:!!! !|||||||||.!!|||||| !! !:!!|||!.!! !||||| snArgTrpAlaMetLysSerIleGlyThrTrpPro------GlnPheSerSerAsnLeuGluAr 425 : ATCGATGGGCGATGAAAAGCATAGGCACATGGCCA------CAGTTCTCGTCGAACCTCGAGAG : 369 45 : gIleIleSerPheIleLeuIleAlaLeuCysTyrGlyPheIleLeuPheThrValIleProCys : 65 |! !|||||| ||||||! !!.!:!!|||||| ! |||||||||:!!:!!||||||||| gAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCys 368 : AAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGT : 306 66 : IlePheHisPheIleLeuGluAspGluSerIleTyrMetLysLeuLysValPheGlyProLeuS : 87 !!.|||.!.!!:|||||| ! ! !!!!.!!|||! !|||:!!|||:!!.!!|||||||||| SerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyProLeuS 305 : TCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGA : 240 88 : erHisTrpPheIleGlyGlyIleAsnTyrThrAsnLeuLeuLeuArgSerAsnGluIleArgAs : 108 |||||||| ! .!! !! !|||!:!||||||! |||||||||||| !!!!. |||!.! ! erHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHi 239 : GCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCA : 177 109 : pCysIleHisHisValGlnThrAspTrpLysIleValThrArgProGluAspSerGlnValMet : 129 !! !:!!:!!|||:!!:!!|||||||||!:!! ..!|||||| ||| ...:::|||||| sPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMet 176 : CTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATG : 114 130 : MetLysTyrAlaArgIleGlyArgPheIleAlaAlaPheCysAlaThrPheMetGlnGlyGlyV : 151 :!!|||||||||!:!.!!.!!|||!:! ||| !|||||||||! !|||!!:!!.||||||: LeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyI 113 : CTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTA : 48 152 : alLeuThrTyrCysValValThrAlaPheAlaThrGlnThrIle : 165 !!||| !|||||||||:!!||||||! !.!!|||..!..!:!! leLeuGlyTyrCysValMetThrAlaSerThrThrMetValVal 47 : TACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTC : 4 vulgar: gi|350422500|ref|XP_003493182.1| 1 165 . LHQN01027980.1 489 3 - 400 M 33 99 G 2 0 M 129 387 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4 489 400 - . gene_id 1 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4 489 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4 489 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 4 489 400 - . alignment_id 1 ; Query gi|350422500|ref|XP_003493182.1| ; Align 490 2 99 ; Align 391 37 387 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 240 Query range: 337 -> 406 Target range: 4381 -> 4085 338 : GlnSerLysLysPheGlyAspValValTyrMetThrLysTrpTyrTyrLeuProAsnLysAs : 358 |||!!! !||| !!|||!!:||||||||||||||| ! |||||||||||||||.!.!:! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 359 : pIlePheAspLeuIleLeuIleIleThrArgSerAsnSerAlaIleLysIleThrAlaGlyL : 379 |||.!!|||||||||||||||||||||||||||||| !!.!:!!:!!||||||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 380 : ysIleThrHisMetSerIleAsnThrPheGlyAsp >>>> Target Intron 1 >>>> : 391 ||||| |||||||||:!! !!|||||||||||| 89 bp ysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATgt......................... : 4220 392 : ValMetLysThrAlaPheAlaTyrLeuAsnLeuLeuArgGlnValThr : 406 |||:!:||||||!.!|||||||||||||||:!!||| !!|||:!!:!! ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMetSer 4219 : agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAAATGTCC : 4086 vulgar: gi|350422500|ref|XP_003493182.1| 337 406 . LHQN01027980.1 4381 4085 - 240 M 53 159 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4086 4381 240 - . gene_id 2 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4223 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4086 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4086 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4086 4381 240 - . alignment_id 2 ; Query gi|350422500|ref|XP_003493182.1| ; Align 4382 338 159 ; Align 4134 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 337 -> 391 Target range: 1990 -> 1822 338 : GlnSerLysLysPheGlyAspValValTyrMetThrLysTrpTyrTyrLeuProAsnLysAs : 358 :!!!!!! ||| !!|||! !||||||||||||:!!|||||| ||| !!.!.||| GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysTh 1990 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAAC : 1930 359 : pIlePheAspLeuIleLeuIleIleThrArgSerAsnSerAlaIleLysIleThrAlaGlyL : 379 ! !.!!! !!!!:!!:!!||||||:!!||||||!:!! !!.!||||||||||||||||||| rAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyL 1929 : TGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAA : 1867 380 : ysIleThrHis<-><->MetSerIleAsnThrPheGlyAspVal : 391 ||.!!..!:!! !|||:!! ||||||||||||||| ysPheValTyr***ThrSerSerValAlaThrPheGlyAspVal 1866 : AATTCGTATACTGAACATCGTCTGTCGCAACATTTGGCGATGTG : 1823 vulgar: gi|350422500|ref|XP_003493182.1| 337 391 . LHQN01027980.1 1990 1822 - 115 M 45 135 G 0 6 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1823 1990 115 - . gene_id 3 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1823 1990 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1823 1990 . - . insertions 6 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1823 1990 115 - . alignment_id 3 ; Query gi|350422500|ref|XP_003493182.1| ; Align 1991 338 135 ; Align 1850 383 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 395 Query range: 1 -> 165 Target range: 489 -> 3 2 : ThrAsnLysThrValAlaIleLysIleAspPheAspGlyArgSerAspTyrSerLeuGlnLeuA : 23 !.!:!!|||||||||!.!! !:!!|||:!!.!. !!.!!!!||||||||||||||||||! !| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpA 489 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGA : 426 24 : snArgTrpPheLeuLysProIleGlyAlaTrpProSerPheProSerThrSerArgLeuGluAr : 44 |||||||| :!!||| !||||||.!!||||||..!||| :!!|||!.!|||||||| snArgTrpAlaMetLysSerIleGlyThrTrpProGlnPhe------SerSerAsnLeuGluAr 425 : ATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTC------TCGTCGAACCTCGAGAG : 369 45 : gIleMetSerPheValLeuIleValIleCysTyrIleIleLeuIleCysThrIleIleProCys : 65 |! !!!:||| :!!|||! !||||||||||||! ! !:!!:!!! !:!!|||||||||||| gAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCys 368 : AAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGT : 306 66 : LeuLeuHisIleIleLeuGluAsnGluSerPheArgIleLysLeuArgLeuIleGlyProValS : 87 ! !||||||:!!!!:||||||!!.! !!!!||| !! |||:!!!:!:!!:!!||||||:!!| SerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyProLeuS 305 : TCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGA : 240 88 : erTyrLeuCysValGlySerIleAsnTyrThrThrLeuLeuLeuArgGlyLysAspIleArgTy : 108 ||:!!! ! !! !!! !|||!:!||||||! !|||||||||||| !!||| !|||!.!:! erHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHi 239 : GCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCA : 177 109 : rCysValGluHisMetGlnThrAspTrpArgThrValLysArgGluLysAspGlnGlnValMet : 129 !! !|||.!.||||||:!!|||||||||||||||..! |||:::::: ::::::|||||| sPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMet 176 : CTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATG : 114 130 : LeuLysSerAlaLysPheGlyArgTyrValThrAlaSerThrAlaAlaPheMetGlnGlyGlyV : 151 ||||||! !|||||||||.!!||||||!.!.!! !! ! !||| !|||!!:!!.||||||: LeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyI 113 : CTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTA : 48 152 : alPheCysTyrCysPheMetThrAlaLeuSerThrGluValIle : 165 !!.!! ! |||||| !!|||||||||! !!!!||| !|||:!! leLeuGlyTyrCysValMetThrAlaSerThrThrMetValVal 47 : TACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTC : 4 vulgar: gi|350422503|ref|XP_003493183.1| 1 165 . LHQN01027980.1 489 3 - 395 M 35 105 G 2 0 M 127 381 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4 489 395 - . gene_id 1 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4 489 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4 489 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 4 489 395 - . alignment_id 1 ; Query gi|350422503|ref|XP_003493183.1| ; Align 490 2 105 ; Align 385 39 381 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 272 Query range: 300 -> 393 Target range: 4581 -> 4210 301 : GluTrpSerAspSerAspIleGlnIleLeuThrThrTyrSerMetLeuLeuAlaSerIleCy : 321 ||||||!!!!!:|||||| !|||!!:||| !||||||! !:!: !|||!.!:!!:!! GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValVa 4581 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTGT : 4521 322 : sPheAsnIlePheValIleCysTyrIleGlyGluThrLeuThrGluGln >>>> Target : 338 ! ||| |||:::||||||||||||.!!!!:! !|||||||||||| 9 lSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4520 : TtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt........... : 4468 339 : Intron 1 >>>> SerArgLysValGlyAspValValTyrMetAlaAsnTrpTyrTyrL : 353 2 bp !!! !|||||||||!!:||||||||||||.!!:!!|||||||||| ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrL 4467 : ..............agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATC : 4333 354 : euThrGluLysArgIleLeuGluLeuIleLeuIleIleMetArgSerSerValValValGlu : 373 || !!:!!!:!|||||||||!!:|||||||||||||||! ||||||!:!|||||||||||| euProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGlu 4332 : TGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAA : 4273 374 : IleThrAlaGlyLysIleIleHisMetSerIleGlnThrPheSerThrValIleLysThr : 393 ||||||||||||||||||...|||||||||:!! ! ||||||.!! !|||! !:!!||| IleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThr 4272 : ATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 4211 vulgar: gi|350422503|ref|XP_003493183.1| 300 393 . LHQN01027980.1 4581 4210 - 272 M 37 111 5 0 2 I 0 88 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4211 4581 272 - . gene_id 2 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4581 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4581 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4211 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4211 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4211 4581 272 - . alignment_id 2 ; Query gi|350422503|ref|XP_003493183.1| ; Align 4582 301 111 ; Align 4379 338 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 339 -> 381 Target range: 1981 -> 1855 340 : LysValGlyAspValValTyrMetAlaAsnTrpTyrTyrLeuThrGluLysArgIleLeuGl : 360 |||||||||! !|||||||||.!!.!.|||||| |||:!!:!!|||! ! !|||! LysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGl 1981 : AAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGG : 1921 361 : uLeuIleLeuIleIleMetArgSerSerValValValGluIleThrAlaGlyLysIleIleH : 381 !!!:!!:!!|||||| |||||||||:!!|||:!!:!!|||||||||||||||.!!:!!: yPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheValT 1920 : TTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTAT : 1858 382 : is : 381 !! yr 1857 : AC : 1856 vulgar: gi|350422503|ref|XP_003493183.1| 339 381 . LHQN01027980.1 1981 1855 - 119 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1856 1981 119 - . gene_id 3 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1856 1981 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1856 1981 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1856 1981 119 - . alignment_id 3 ; Query gi|350422503|ref|XP_003493183.1| ; Align 1982 340 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 363 Query range: 1 -> 157 Target range: 489 -> 27 2 : ThrAspAspProValThrValGluArgLysPheGlySerLeuSerGluTyrSerIleGlnValA : 23 !.!||| ! !!|||..!..!|||! !!!..!. !:!! !|||!!:||||||:!!||| !| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpA 489 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGA : 426 24 : snArgTrpIleLeuLysProIleGlyAlaTrpProSerSerAsnSerThrThrAsnArgGluLy : 44 |||||||| :!!||| !||||||.!!||||||..!! !:::||| |||! !|||!: snArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSer------AsnLeuGluAr 425 : ATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCG------AACCTCGAGAG : 369 45 : sPheMetSerTrpIleLeuAsnValIleCysTrpCysPheSerLeuPheThrIleIleProGly : 65 ! !!!:||| ! ||||||||||||||||||!:: ! ! !||||||:!!||||||||| !! gAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCys 368 : AAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGT : 306 66 : ValLeuAsnIleLeuLeuGluLysGluAspLeuTyrLeuLysLeuLysMetPheGlyProLeuS : 87 !|||:!!:!!:!!|||||||||! ! !!!!||| !|||:!!|||!!:.!!|||||||||| SerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyProLeuS 305 : TCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGA : 240 88 : erHisTrpCysValGlyGlyPheAsnTyrAlaValLeuLeuLeuArgGlnGlyAspIleHisTy : 108 |||||||| !! !! !.!!!:!|||.!!:!!||||||||||||!:: ! !||||||:! erHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHi 239 : GCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCA : 177 109 : rCysIleLysHisIleArgThrAspTrpLysThrIleThrArgLeuGluAspGlnArgIleMet : 129 !! !:!!!!.|||!!:..!|||||||||!:!|||! |||||| ||| :::...:::||| sPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMet 176 : CTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATG : 114 130 : LeuLysAsnAlaLysLeuGlyArgTyrIleAlaCysPheCysAlaAlaPheMetHisGlySerV : 151 |||||| !!||||||!!!.!!|||||| ||| !||||||||| !|||!!:||||||.!!: LeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyI 113 : CTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTA : 48 152 : alPheCysThrCysLeuVal : 157 !!.!! ! !|||:!!:!! leLeuGlyTyrCysValMet 47 : TACTTGGATATTGTGTTATG : 28 vulgar: gi|350412835|ref|XP_003489780.1| 1 157 . LHQN01027980.1 489 27 - 363 M 37 111 G 2 0 M 117 351 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 28 489 363 - . gene_id 1 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 28 489 . - . LHQN01027980.1 exonerate:protein2genome:local exon 28 489 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 28 489 363 - . alignment_id 1 ; Query gi|350412835|ref|XP_003489780.1| ; Align 490 2 111 ; Align 379 41 351 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 276 Query range: 300 -> 403 Target range: 4581 -> 4091 301 : GluTrpSerGluHisAsnIleGlnAsnIleAlaAlaTyrValMetIleIleIleSerMetTh : 321 ||||||!!!||| !:!! !|||! :!! !.!!|||:!!:!:! !:!!:!!:!!:!:.. GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValVa 4581 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTGT : 4521 322 : rCysAsnIlePheLeuValCysTyrIleGlyGluIleIleMetGluLys >>>> Target : 338 ! ||| ||||||:::|||||||||.!!!!:! :!:! |||:!! 9 lSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4520 : TtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt........... : 4468 339 : Intron 1 >>>> CysLysLysIleGlyAspMetValTyrMetAlaAspTrpHisHisL : 353 2 bp ||| !|||:!!|||!!::!!|||||||||.!!||||||:!!:!!| ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrL 4467 : ..............agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATC : 4333 354 : euProAspGlnAspIleIleAsnLeuIleMetIleIleSerArgSerSerMetGluValLys : 373 |||||.!.::! |||:!!:!!||||||:!!||||||!!!||||||!:!:!!! |||:!! euProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGlu 4332 : TGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAA : 4273 374 : IleThrAlaGlyLysIleIleAspMetSerValLeuThrPheAlaAsn >>>> Target : 390 ||||||||||||||||||... ||||||:!!! !||||||!.!:!! 89 IleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4272 : ATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt............ : 4220 391 : Intron 2 >>>> IleValLysThrValPheAlaTyrLeuAsnMetLeuCysGln : 403 bp :!!|||||||||! !||||||||||||||||||||||||||| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGln 4219 : .............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAA : 4092 vulgar: gi|350412835|ref|XP_003489780.1| 300 403 . LHQN01027980.1 4581 4091 - 276 M 37 111 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4092 4581 276 - . gene_id 2 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4581 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4581 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4223 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 2 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 2 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 1 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4092 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4092 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4092 4581 276 - . alignment_id 2 ; Query gi|350412835|ref|XP_003489780.1| ; Align 4582 301 111 ; Align 4379 338 156 ; Align 4134 390 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 339 -> 380 Target range: 1981 -> 1858 340 : LysIleGlyAspMetValTyrMetAlaAspTrpHisHisLeuProAspGlnAspIleIleAs : 360 |||:!!|||! ! |||||||||.!!!!:|||:!!!..||| !!.!.:!! ! !:!!.. LysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGl 1981 : AAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGG : 1921 361 : nLeuIleMetIleIleSerArgSerSerMetGluValLysIleThrAlaGlyLysIleIle : 380 !!!!:!!||||||||||||||||||||||||! !:!!||||||||||||||||||.!!:!! yPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheVal 1920 : TTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTA : 1859 vulgar: gi|350412835|ref|XP_003489780.1| 339 380 . LHQN01027980.1 1981 1858 - 118 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1859 1981 118 - . gene_id 3 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1859 1981 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1859 1981 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1859 1981 118 - . alignment_id 3 ; Query gi|350412835|ref|XP_003489780.1| ; Align 1982 340 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 296 Query range: 19 -> 159 Target range: 444 -> 30 20 : GluTyrSerIleGlnValAsnArgTrpLeuMetGlnProIleGlyAlaTrpProLysLeuThrL : 41 !!:||||||:!!||| !||||||||| !|||:!! !||||||.!!||||||:!!!!! AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPhe---- 444 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTC---- : 384 42 : ysThrAsnArgThrGlnArgLeuPheAlaLysLeuLeuAsnPheIleCysHisSerLeuIleIl : 62 :!!:::!.! !:!!||| !.!!:!!::!:!!|||||| ! ||||||:!!!!! !|||:! --SerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLe 383 : --TCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACT : 324 63 : ePheThrIleValProCysIleLeuHisIleValTyrGluAlaGluSerSerArgMetLysMet : 83 !|||:!!|||:!!|||||| ||||||:!!:!! ||| !! !!!!! ! !! !|||:!! uPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysVal 323 : ATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTG : 261 84 : LysIleIleGlyProValSerHisTrpLeuMetGlyGluLeuAsnTyrCysCysLeuLeuSerL : 105 ||||||:!!||||||:!!|||||||||:!!.!. !! :!!!:!||| ! |||||| !: LysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuA 260 : AAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGC : 195 106 : ysThrAspAspIleIleArgCysIleLysHisValGluArgAspTrpGlnValValGluAsnAl : 126 :! ! ! !||| !!.!! !:!!!!.|||:!!|||! !||||||::!..!..! ... rgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLy 194 : GACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaa : 132 127 : aSerSerArgGluMetMetLeuLysTyrAlaLysValGlyArgPheIleAlaPheIleAlaAla : 147 ......:::|||:::|||||||||||||||||| !!.!!|||!:! |||.!!.!!..!||| sGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAla 131 : ggagaagaaagaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCG : 69 148 : PheCysMetHisSerGlyValLeuAlaPheSerIle : 159 .!!! !!!:|||.!!|||:!!|||!.!!:!!!!:!! IlePheIleHisGlyGlyIleLeuGlyTyrCysVal 68 : ATCTTCATACACGGTGGTATACTTGGATATTGTGTT : 31 vulgar: gi|350422520|ref|XP_003493189.1| 19 159 . LHQN01027980.1 444 30 - 296 M 20 60 G 2 0 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 31 444 296 - . gene_id 1 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 31 444 . - . LHQN01027980.1 exonerate:protein2genome:local exon 31 444 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 31 444 296 - . alignment_id 1 ; Query gi|350422520|ref|XP_003493189.1| ; Align 445 20 60 ; Align 385 42 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 215 Query range: 338 -> 408 Target range: 1996 -> 1709 339 : IleGluGlnGlyGluArgValGlyLysLysValTyrMetThrGluTrpTyrArgLeuProHi : 359 |||! !:!! ! !:!|||||| !|||||||||||||||||||||||||||||| !!!! IleGlyGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGl 1996 : ATCGGAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCA : 1936 360 : sLysThrAlaLeuGlyLeuValLeuValIleSerArgSerSerMetValValLysIleThrA : 380 .|||||||||||||||!!!|||:!!:!!|||||||||||||||||||||:!!|||||||||| nLysThrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrA 1935 : AAAAACTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCG : 1873 381 : laGlyLysPheIle<-><->GlnIleSerIleThrThrPheGlyVal >>>> Target I : 394 |||||||||||:!! ! |||:!!.!!|||||||||! ! 71 laGlyLysPheValTyr***ThrSerSerValAlaThrPheGlyAsp++ 1872 : CTGGAAAATTCGTATACTGAACATCGTCTGTCGCAACATTTGGCGATgt............. : 1823 395 : ntron 1 >>>> ValPheLysThrSerPheAlaTyrLeuAsnMetIleArgThrMet : 408 bp |||||||||.!!||||||||||||!!!|||||||||||||||:!: ++ValPheLysAlaSerPheAlaTyrPheAsnMetIleArgThrVal 1822 : ............agGTATTTAAAGCGTCTTTCGCCTACTTCAACATGATCCGCACAGTT : 1710 vulgar: gi|350422520|ref|XP_003493189.1| 338 408 . LHQN01027980.1 1996 1709 - 215 M 46 138 G 0 6 M 9 27 5 0 2 I 0 67 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1710 1996 215 - . gene_id 2 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 1826 1996 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1826 1996 . - . insertions 6 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 1824 1825 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 1755 1825 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 1755 1756 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 1710 1754 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1710 1754 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1710 1996 215 - . alignment_id 2 ; Query gi|350422520|ref|XP_003493189.1| ; Align 1997 339 138 ; Align 1853 385 27 ; Align 1755 394 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 190 Query range: 343 -> 408 Target range: 4372 -> 4088 344 : ArgValGlyLysLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGl : 364 !:!||||||:!! !||||||||||||!!:|||||| !||||||!!.!:!! ! !|||! LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAs 4372 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGA : 4312 365 : yLeuValLeuValIleSerArgSerSerMetValValLysIleThrAlaGlyLysPheIleG : 385 !|||:!!|||:!!|||!!!||||||!:!:!!||||||:!!|||||||||||||||....... pLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLysIlePheH 4311 : TTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaaaatattcc : 4249 386 : lnIleSerIleThrThrPheGlyVal >>>> Target Intron 1 >>>> ValPheL : 396 ..:::|||:!! !|||||||||! ! 89 bp ||| ! | isMetSerLeuTyrThrPheGlyAsp++ ++ValValL 4248 : atatgTCGCTTTACACGTTCGGCGATgt.........................agGTAGTAA : 4127 397 : ysThrSerPheAlaTyrLeuAsnMetIleArgThrMet : 408 |||||.!!||||||||||||||||||:!! !! !||| ysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMet 4126 : AAACAGGATTCGCCTACTTGAATATGCTTTGTCAAATG : 4089 vulgar: gi|350422520|ref|XP_003493189.1| 343 408 . LHQN01027980.1 4372 4088 - 190 M 50 150 5 0 2 I 0 85 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4089 4372 190 - . gene_id 3 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4223 4372 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4372 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4089 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4089 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4089 4372 190 - . alignment_id 3 ; Query gi|350422520|ref|XP_003493189.1| ; Align 4373 344 150 ; Align 4134 394 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 221 Query range: 23 -> 161 Target range: 441 -> 36 24 : TyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpProLeuValSerAsnH : 45 |||!:!|||||| ! !!:!||| !:!!||| !||||||..!||||||! ! !!||| TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSer---- 441 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCG---- : 381 46 : isThrSerLysLeuGluGlnLeuValSerValIleLeuMetIleMetCysPheSerSerLeuLe : 66 |||!!.||||||::! !:!!||| !||||||! :!:!!:|||!:!!!!:!!:!!|| -----SerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLe 380 : -----TCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACT : 324 67 : uPheIleIleLeuProSerPheTyrHisIlePhePheValGluLysSerValHisValLysVal : 87 |||| |||:!!|||!!!! ! |||:!!.!..!.! !:!! !!!! !!:!!..!|||||| uPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysVal 323 : ATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTG : 261 88 : LysLeuLeuGlyProValGlyPheCysLeuSerSerThrIleLysTyrCysTyrLeuGlyValL : 109 |||:!!|||||||||:!!.!! !!! :!!! !!!!! !|||!..||| ! ||| !:!!: LysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuA 260 : AAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGC : 195 110 : ysGlyAlaPhePheGluArgCysIleGlnHisValGluLysAspTrpLysMetValGlnAspPr : 130 :! !! ! !.!..!.!.!! !:!!.!.|||:!!|||! ||||||!:!! !..! rgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLy 194 : GACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaa : 132 131 : oAsnHisArgThrIleMetLeuLysTyrAlaThrValSerArgLysLeuIleThrLeuCysAla : 151 ... ::: :::|||||||||||||||! ! !!|||||| ! ! ! !!!!|||||| sGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAla 131 : ggagaagaaagaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCG : 69 152 : IlePheLeuTyrThrGlyGlyMetSerTyr : 161 ||||||:!!:!! !||| !:!:.!!||| IlePheIleHisGlyGlyIleLeuGlyTyr 68 : ATCTTCATACACGGTGGTATACTTGGATAT : 37 vulgar: gi|350412763|ref|XP_003489754.1| 23 161 . LHQN01027980.1 441 36 - 221 M 20 60 G 3 0 M 115 345 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 37 441 221 - . gene_id 1 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 37 441 . - . LHQN01027980.1 exonerate:protein2genome:local exon 37 441 . - . insertions 0 ; deletions 3 LHQN01027980.1 exonerate:protein2genome:local similarity 37 441 221 - . alignment_id 1 ; Query gi|350412763|ref|XP_003489754.1| ; Align 442 24 60 ; Align 382 47 345 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 340 -> 400 Target range: 4381 -> 4201 341 : GlnCysSerGlnIleGlyIleThrSerTyrGluIleGluTrpTyrGlnLeuProAlaLysLy : 361 ||||||! !:!!:!!||| !..! !||| !! !!!:|||||| ! |||||| !!:!!: GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 362 : sAlaTyrAspLeuIleLeuLeuIleSerIleSerHisTyrProProLysLeuThrAlaGlyL : 382 ! ! !||||||||||||:!!|||!!! !|||:!! ! !:!!:!!|||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 383 : ysIleIleGluLeuSerLeuAsnThrPheSerSerValAlaLysSerSerValIle : 400 |||||......:::|||||| !!||||||.!!..!|||::!:!!!!!!:!:!!:!! ysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeuVal 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTTGTT : 4202 vulgar: gi|350412763|ref|XP_003489754.1| 340 400 . LHQN01027980.1 4381 4201 - 132 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4202 4381 132 - . gene_id 2 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4202 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4202 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4202 4381 132 - . alignment_id 2 ; Query gi|350412763|ref|XP_003489754.1| ; Align 4382 341 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 279 Query range: 2 -> 157 Target range: 486 -> 27 3 : AspGluLeuValAlaAlaLysLysLysTyrGlyAsnLeuGlyGluTyrSerValGlnLeuSerA : 24 |||:!! !|||!.!.!!:!!! !!. ! ! !.!!!!:||||||:!!|||! !!:!| AspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnA 486 : GACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATC : 423 25 : rgTrpTyrLeuArgProMetGlyAlaTrpProAsnSerProSerThrThrArgArgGluLysIl : 45 ||||| :!!!:! !!!:|||.!!||||||.!.! ! !!|||!.! !..!|||.!. rgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerAsnLeuGluArgAsn----- 422 : GATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGAACCTCGAGAGAAAC----- : 363 46 : eLeuAlaGlnIleSerIleValIleCysTrpCysIleValLeuPheThrIleValProGlyPhe : 66 :!!:!!!:!|||! !! !|||||||||!:: ! !:!!||||||:!!|||:!!||| !!! -IleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSer 362 : -ATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCG : 303 67 : LeuHisIleIleLeuValLysGluAspIleTyrLeuLysLeuLysThrLeuGlyProLeuSerH : 88 ||||||:!!!!:|||! !|||! ! !.!!||| !|||:!!|||! !|||||||||||||||| LeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyProLeuSerH 302 : TTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCC : 237 89 : isTrpCysValAspGlyPheAsnTyrAlaValLeuLeuLeuArgGlnGluAspIleAsnTyrCy : 109 ||||| !! ! !.!!!:!|||.!!:!!||||||||||||!:::!! !|||:!!:!!! isTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPh 236 : ACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTT : 174 110 : sIleGluArgValArgSerAspTrpLysMetIleThrArgValGlnAspArgTyrGluMetTrp : 130 !:!!.!.!.!:!!..!!!!||||||!:!! !! |||||| ::: ::: ||| ! eValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeu 173 : TGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGCTG : 111 131 : LysAsnAlaLysLeuGlyArgTyrValAlaGlyPheCysAlaGlyPheMetGlnGlyThrMetI : 152 ||| !!||||||!!!.!!||||||!.!||| !||||||||| !|||!!:!!.||| !!!:: LysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleL 110 : AAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTATAC : 45 153 : leTyrThrCysValVal : 157 !! !||||||:!! euGlyTyrCysValMet 44 : TTGGATATTGTGTTATG : 28 vulgar: gi|350412806|ref|XP_003489770.1| 2 157 . LHQN01027980.1 486 27 - 279 M 41 123 G 2 0 M 112 336 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 28 486 279 - . gene_id 1 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 28 486 . - . LHQN01027980.1 exonerate:protein2genome:local exon 28 486 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 28 486 279 - . alignment_id 1 ; Query gi|350412806|ref|XP_003489770.1| ; Align 487 3 123 ; Align 364 46 336 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 247 Query range: 299 -> 392 Target range: 4581 -> 4210 300 : GluTrpSerGluHisAsnValGlnAlaMetIleIleTyrValMetValPheLeuSerMetTh : 320 ||||||!!!||| !:!!!.!||| !:!:.!!! |||:!!:!:..!.!!:!!:!!:!:.. GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValVa 4581 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTGT : 4521 321 : rPheAsnIlePheLeuIleCysTyrIleGlyGluValLeuLysGluGln >>>> Target : 337 ! ||| ||||||||||||||||||.!!!!: !|||! !|||||| 9 lSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4520 : TtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt........... : 4468 338 : Intron 1 >>>> CysGlnLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnL : 352 2 bp ||| !|||||||||!!::!!||||||||||||:!!|||||| ! | ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrL 4467 : ..............agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATC : 4333 353 : euProAspLysAsnIleLeuSerIleIleMetIleIleSerArgSerHisMetGluValLys : 372 |||||.!.!:!!..||||||..!:!!|||:!!||||||!!!||||||:!!:!!! |||:!! euProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGlu 4332 : TGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAA : 4273 373 : IleThrAlaGlyLysIleIleThrMetSerValTyrThrPheGlyAsnIleIleLysThr : 392 ||||||||||||||||||... ||||||:!!||||||||||||:!!:!!! !:!!||| IleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThr 4272 : ATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 4211 vulgar: gi|350412806|ref|XP_003489770.1| 299 392 . LHQN01027980.1 4581 4210 - 247 M 37 111 5 0 2 I 0 88 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4211 4581 247 - . gene_id 2 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4581 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4581 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4211 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4211 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4211 4581 247 - . alignment_id 2 ; Query gi|350412806|ref|XP_003489770.1| ; Align 4582 300 111 ; Align 4379 337 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 335 -> 389 Target range: 1990 -> 1822 336 : GlnCysGlnLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspLysAs : 356 :!! ! |||||||||! ! ||||||||||||.!.||||||!:!||| !!.!.|||!. GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysTh 1990 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAAC : 1930 357 : nIleLeuSerIleIleMetIleIleSerArgSerHisMetGluValLysIleThrAlaGlyL : 377 ! !|||.!!.!!:!!|||||||||||||||||| !|||! !:!!|||||||||||||||| rAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyL 1929 : TGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAA : 1867 378 : ysIleIle<-><->ThrMetSerValTyrThrPheGlyAsnIle : 389 ||.!!:!! ||| !|||||| |||||||||:!!:!: ysPheValTyr***ThrSerSerValAlaThrPheGlyAspVal 1866 : AATTCGTATACTGAACATCGTCTGTCGCAACATTTGGCGATGTG : 1823 vulgar: gi|350412806|ref|XP_003489770.1| 335 389 . LHQN01027980.1 1990 1822 - 135 M 44 132 G 0 6 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1823 1990 135 - . gene_id 3 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1823 1990 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1823 1990 . - . insertions 6 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1823 1990 135 - . alignment_id 3 ; Query gi|350412806|ref|XP_003489770.1| ; Align 1991 336 132 ; Align 1853 380 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 738 Query range: 1 -> 299 Target range: 1118 -> 162 2 : ThrAsnLysSerAlaValValGluLysThrPheAspSerLeuGlyAspTyrSerLeuGlnPh : 22 !.!:!!|||!!!!.!|||..!|||! !.!.!. !:!! !.!!|||||||||||||||!: AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTr 1118 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTG : 1058 23 : eAsnArgTrpLeuLeuIleSerIleGlyAlaTrpProAlaSerThrSerThrSerArgArgG : 43 :||||||||| !:!!! !|||||||||||||||||| !|||:!!|||!.!! !| pAsnArgTrpAlaMetLysSerIleGlyAlaTrpPro------GlnSerSerSerAsnLeuG 1057 : GAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCA------CAGTCCTCGTCGAATCTCG : 1001 44 : luArgIleIleSerPheIleLeuIleAlaLeuCysTyrGlyPheIleLeuPheThrValIle : 63 |||||||||||||| ||||||! !!.!:!!|||||| ! :!!|||||||||:!!||| luArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIle 1000 : AGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATC : 941 64 : ProCysIlePheHisPheIleLeuGluAspGluSerIleTyrMetLysLeuLysValPheGl : 84 |||||| .!.||| ! !!:|||||| ! |||!!!.!!|||! !|||:!!|||:!!.!!|| ProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGl 940 : CCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGG : 878 85 : yProLeuSerHisTrpPheIleGlyGlyIleAsnTyrThrAsnLeuLeuLeuArgSerAsnG : 105 |||||||||||||||| ! .!! !! !|||!:!||||||! |||||||||||| !!!!. yProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysT 877 : TCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAA : 815 106 : luIleArgAspCysIleHisHisValGlnThrAspTrpLysIleValThrArgProGluAsp : 125 |||||| !!! !.!!:!!|||:!!:!!|||||||||!:!! ..!! ||| ||| hrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLys 814 : CCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaag : 755 126 : SerGlnValMetMetLysTyrAlaArgIleGlyArgPheIleAlaAlaPheCysAlaThrPh : 146 ...::::::|||:!!|||||||||!:!.!!.!!|||!:! ||| !! !|||.!!! !|| LysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePh 754 : aaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTT : 692 147 : eMetGlnGlyGlyValLeuThrTyrCysValValThrAlaPheAlaThrGlnThrIleGluI : 167 |!!:!!.||||||:!!||| !|||||||||:!!|||||||||.!!|||..!..!:!!! !: eIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValV 691 : CATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGG : 629 168 : leAlaAsnGluThrArgIleIleArgMetLeuProCysAlaAlaTyrLysAsnLeuIlePro : 187 !!!.!|||||||||! !|||:!:|||:!!||||||! !! !||||||...|||:!!||| alGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuPro 628 : TTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCA : 569 188 : ValAspSerSerProMetAsnGluIleValLeuAlaThrGlnPheIleSerGlyPheIleVa : 208 ||||||!!!!:! !!|||||||||||||||||| !:!!||||||:!!||||||||||||!. ValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAl 568 : GTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGC : 506 209 : lAsnSerSerAlaValAlaIleIleSerIleGlyAlaValPheThrAlaHisAlaTyrGlyG : 229 !|||!!!||||||:!!::!:!!||||||:!! !::!!.!.!.|||:!!||||||! !|||| aAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyG 505 : GAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCC : 443 230 : lnLeuThrValLeuMetArgTrpIleAsnGluPheValAsnArgSerGluAspGlnLysLys : 249 ||||| !|||:!!||| !! !|||.!.!!:||||||!:! !:!!..! !::! !||| lnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLys 442 : AGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAG : 383 250 : SerValGluPheAsnGluIleGlyGluIleValGluHisHisLeuArgIleLeu{Se} >> : 268 ..!! !.!.|||:!!|||||| ! !||||||||| ! |||||||||:!:|||{!:} AspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeu{As}++ 382 : GACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG{AA}gt.. : 322 269 : >> Target Intron 1 >>>> {r}LeuIleAlaGlyIleGluAsnValLeuThrGlnP : 280 68 bp {!}!!!|||:!! !!|||||| :!!:!!!.!:!! ++{n}PheIleSerArgIleGluAlaMetIleAsnLysA 321 : .......................ag{C}TTCATATCGCGCATAGAGGCAATGATAAACAAAG : 222 281 : heCysPheMetGluLeuLeuLysSerLysLeuAspIleSerMetLeuGlyTyrTyrIle : 299 ||||||:!!|||||| !!:!!!!! !:!!! !|||!!!:!:||||||||||||||| laCysPheLeuGluLeuThrArgCysThrIleAlaIleCysValLeuGlyTyrTyrIle 221 : CGTGTTTCCTGGAGTTAACGAGGTGCACGATAGCTATATGCGTACTTGGATATTATATA : 163 vulgar: gi|350422500|ref|XP_003493182.1| 1 299 . LHQN01028641.1 1118 162 - 738 M 33 99 G 2 0 M 231 693 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 163 1118 738 - . gene_id 1 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1118 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1118 . - . insertions 0 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 163 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 163 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 163 1118 738 - . alignment_id 1 ; Query gi|350422500|ref|XP_003493182.1| ; Align 1119 2 99 ; Align 1020 37 693 ; Align 256 269 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 461 Query range: 19 -> 244 Target range: 1073 -> 404 20 : GluTyrSerIleGlnValAsnArgTrpLeuMetGlnProIleGlyAlaTrpProLysLeuTh : 40 !!:||||||:!!||| !||||||||| !|||:!! !|||||||||||||||:!! AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGln----- 1073 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAG----- : 1016 41 : rLysThrAsnArgThrGlnArgLeuPheAlaLysLeuLeuAsnPheIleCysHisSerLeuI : 61 ...:!!:::!.! !:!!|||:!!.!!:!!::!:!!|||||| ! ||||||:!!!!! !: -SerSerSerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaV 1015 : -TCCTCGTCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAG : 956 62 : leIlePheThrIleValProCysIleLeuHisIleValTyrGluAlaGluSerSerArgMet : 81 !!:!!|||||||||:!!|||||| ||||||:!!:!! ||| !|||!!!! ! !! ! alLeuPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThr 955 : TACTATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACG : 896 82 : LysMetLysIleIleGlyProValSerHisTrpLeuMetGlyGluLeuAsnTyrCysCysLe : 102 |||:!!||||||:!!||||||:!!|||||||||:!!.!. !! :!!!:!||| ! || LysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLe 895 : AAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCT : 833 103 : uLeuSerLysThrAspAspIleIleArgCysIleLysHisValGluArgAspTrpGlnValV : 123 |||| !::! ! ! !||| !!.!! !.!!!!.|||:!!|||! !||||||::!..!. uLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrT 832 : GTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGA : 770 124 : alGluAsnAlaSerSerArgGluMetMetLeuLysTyrAlaLysValGlyArgPheIleAla : 143 .! ... ......:::|||:::|||||||||||||||||| !!.!!|||!:! ||| hrMetArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAla 769 : CGAtgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCG : 710 144 : PheIleAlaAlaPheCysMetHisSerGlyValLeuAlaPheSerIleThrLysGlyPheLy : 164 .!! !..!.!!.!!! !!!:|||.!!|||:!!|||!.!!:!!!!:!!! !! !!.!|||! IleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheTh 709 : ATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCAC : 647 165 : sLysMetMetPheLeuValGlyAsnAspSerTyrPheMetTyrProLeuProCysProValT : 185 ! !|||:!: !!:!!|||||||||!!:!!! .!!:!! ! !||||||! |||:!!| rThrMetValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetT 646 : CACGATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGT : 584 186 : yrThrAsnLeuLeuAspAlaArgPheSerProAlaAsnGluIleValPheValLeuGlnIle : 205 ||! !...|||||| !.! ! !:! !! !||||||||||||.!!:!!! !|||.!! yrLysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPhe 583 : ACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTT : 524 206 : LeuSerGlyPheIleValThrSerValThrValGlyAlaCysGlyLeuAlaAlaValLeuTh : 226 |||||||||||||||!.!!.!!!! !.!!:!!.!!!.! .!!|||.!!::!!.!||||| LeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuTh 523 : CTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAAC : 461 227 : rMetHisAlaSerGlyGlnLeuAsnMetValValAlaArgLeuAspAsnLeuVal : 244 | ||||||||||||||||||..!:!!|||:!! ! !:!!!!::!!!!!||| rSerHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheVal 460 : ATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTG : 405 vulgar: gi|350422520|ref|XP_003493189.1| 19 244 . LHQN01028641.1 1073 404 - 461 M 19 57 G 2 0 M 204 612 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 405 1073 461 - . gene_id 1 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 405 1073 . - . LHQN01028641.1 exonerate:protein2genome:local exon 405 1073 . - . insertions 0 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local similarity 405 1073 461 - . alignment_id 1 ; Query gi|350422520|ref|XP_003493189.1| ; Align 1074 20 57 ; Align 1017 41 612 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 755 Query range: 1 -> 299 Target range: 1118 -> 162 2 : ThrAsnGluProValIleThrGluGlyAspSerAsnSerAsnSerAspTyrSerLeuGlnLe : 22 !.!:!!:!! !!|||:!!|||||| !:!!! !!.!:!!!:!||||||||||||||||||! AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTr 1118 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTG : 1058 23 : uAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerSerSerSerThrThrArgLeuG : 43 !||||||||| :!!||| !|||||||||||||||..!||||||||| !.!|||| pAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSerSer------AsnLeuG 1057 : GAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCGTCG------AATCTCG : 1001 44 : luLysIleValSerPheIleLeuAsnIleIleCysPheThrSerValIleValThrAlaIle : 63 ||!:!|||:!!||| |||||||||:!:||||||!:!|||:!!|||:!! !!||| !||| luArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIle 1000 : AGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATC : 941 64 : ProSerLeuLeuLeuMetIleLeuGluAspGluSerIleTyrMetLysLeuLysThrLeuGl : 84 |||!!!! !|||! !:!:!!:|||||| ! |||!!!.!!|||! !|||:!!|||! !||||| ProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGl 940 : CCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGG : 878 85 : yProValSerHisTrpPheValSerSerAlaAsnTyrThrAlaLeuLeuIleArgGlyArgA : 105 ||||:!!||||||||| ! !!!!!! ! !!:!|||||| !||||||:!:||| !!!:! yProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysT 877 : TCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAA : 815 106 : spIleArgHisCysValGluHisIleGluAlaAspTrpArgThrValThrArgGluGluAsp : 125 !|||||||||! ! !!.!.|||!!:|||.!!||||||||||||..!! |||:::||| hrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLys 814 : CCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaag : 755 126 : GlnHisValMetMetLysAsnAlaLysPheGlyArgTyrValAlaAlaSerCysAlaValPh : 146 :::...:::|||:!!||| !!|||||||||.!!||||||!.!||| !||||||.!!:!!|| LysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePh 754 : aaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTT : 692 147 : eMetGlnGlyGlyValLeuCysPheCysPheValThrAlaLeuThrThrThrGluIleGlnI : 167 |!!:!!.||||||:!!||| ! !:!||| !!:!!||||||!!!||||||! !! :!! !: eIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValV 691 : CATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGG : 629 168 : leGlyAsnGluThrArgValLeuHisValLeuProCysAlaValTyrLysLysLeuValAsn : 187 !!||||||||||||! !:!!|||!.!|||||||||! !!:!!|||||| !|||:!! alGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuPro 628 : TTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCA : 569 188 : ValAspGluSerProAlaAsnGluIleMetLeuPheLeuGlnIleTrpAlaAlaLeuIleAl : 208 |||||| !!:! !! !|||||||||:!:|||!!.! !|||.!! :!!!.!!!!||||| ValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAl 568 : GTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGC : 506 209 : aAsnSerSerThrValGlyIlePheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGlyG : 229 ||||!!!|||.!!:!!.!!:!!.!.||||||.!!::!!.!|||.!!:!!||||||! !|||| aAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyG 505 : GAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCC : 443 230 : lnLeuAspValIleMetMetTrpIleThrLysPheValLysGluAlaArgGluGlnLysGlu : 249 |||||! !|||:!!|||:!!! !||| ! ! ||||||!..!!:||||||...::! !:!! lnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLys 442 : AGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAG : 383 250 : ThrSerSerPheArgLysIleGlyValIleValGluArgHisLeuArgThrLeu{As} >> : 268 !..! !||| !:!!||| !..!|||||||||!:!|||||||||..!|||{||} AspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeu{As}++ 382 : GACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG{AA}gt.. : 322 269 : >> Target Intron 1 >>>> {n}PheIleSerCysIleGluAspValMetAsnArgI : 280 68 bp {|}||||||||| !!||||||! :!!!!:|||!:! ++{n}PheIleSerArgIleGluAlaMetIleAsnLysA 321 : .......................ag{C}TTCATATCGCGCATAGAGGCAATGATAAACAAAG : 222 281 : leTyrPheLeuGluMetPheArgCysThrMetAspIleCysValIleGlyTyrTyrIle : 299 ! !|||||||||:!: |||||||||!!:! !|||||||||:!!|||||||||||| laCysPheLeuGluLeuThrArgCysThrIleAlaIleCysValLeuGlyTyrTyrIle 221 : CGTGTTTCCTGGAGTTAACGAGGTGCACGATAGCTATATGCGTACTTGGATATTATATA : 163 vulgar: gi|350422508|ref|XP_003493185.1| 1 299 . LHQN01028641.1 1118 162 - 755 M 37 111 G 2 0 M 227 681 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 163 1118 755 - . gene_id 1 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1118 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1118 . - . insertions 0 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 163 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 163 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 163 1118 755 - . alignment_id 1 ; Query gi|350422508|ref|XP_003493185.1| ; Align 1119 2 111 ; Align 1008 41 681 ; Align 256 269 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 636 Query range: 3 -> 298 Target range: 1112 -> 162 4 : GluAlaValIleValGluSerAspSerAsnSerAsnSerAspTyrSerLeuGlnLeuAsnAr : 24 :!!.!!|||:!!..!|||! !:!!! !!.!:!!!:!||||||||||||||||||! !||||| LysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnAr 1112 : AAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTGGAATCG : 1052 25 : gTrpPheLeuGlnSerIleGlyAlaTrpProSerSerAlaSerThrThrLysLeuGluLysI : 45 |||| :!!:!!||||||||||||||||||..!|||:!!||| !!.||||||!:!| gTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSerSer------AsnLeuGluArgI 1051 : ATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCGTCG------AATCTCGAGAGAA : 995 46 : leValSerPheIleLeuAsnIleValCysLeuSerIleValIleLeuAlaValIleProSer : 65 ||:!!||| |||||||||:!::!!|||! !!!! !|||:!!!!!.!!:!!||||||!!! leIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIleProCys 994 : TCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATCCCTTGT : 935 66 : LeuLeuLeuMetIleLeuGlyAspGluSerPheAsnPheLysLeuLysMetPheGlyTyrVa : 86 ! !|||! !:!:!!:|||! ! ! |||!!!||| !! |||:!!|||!!:.!!||| :! SerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGlyProLe 934 : TCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTT : 872 87 : lSerHisTrpIlePheSerGlyIleAsnTyrThrAlaLeuLeuThrHisGlyLysAsnIleA : 107 !|||||||||:!:|||!!! !|||!:!|||||| !|||||| !!.. !!|||!.!|||| uSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleA 871 : GAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATAC : 809 108 : rgGlnCysIleGluHisIleGluAlaAspTrpArgThrValThrArgGluGluAspLysAsn : 127 ||!!.! !.!!.!.|||!!:|||.!!||||||||||||..!! |||:::||| |||... rgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLysLysGlu 808 : GTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaagaaagaa : 749 128 : ValMetLeuLysAsnAlaLysLeuGlyArgTyrIleAlaGlyPheSerValIlePheValGl : 148 :::||||||||| !!||||||!!!.!!|||||| ||| !! !!!!..!||||||:!!!! IleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHi 748 : ataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACA : 686 149 : nGlySerValLeuCysPhePhePheAlaAlaAlaLeuSerThrValGluMetGlnValGlyA : 169 .|||.!!:!!||| ! !:!! ! !! !.!!|||!!!!!!|||:!!! :!: !||||||| sGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValValGlyA 685 : CGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTGGAA : 623 170 : snGlu<->ArgIleLeuHisLeuLeuProCysAlaValTyrLysLysLeuValAsnValAsp : 188 ||||| ! !||||||!.!:!!||||||! !!:!!|||||| !|||:!! |||||| snGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAsp 622 : ACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTCGAT : 563 189 : AspSerLeuThrAsnGluIleMetLeuLeuLeuGlnLeuTrpSerThrValIleAlaAsnSe : 209 !:! !! !|||||||||:!:||||||! !|||!!! ||| ! !!|||||||||!! ThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAsnTh 562 : ACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAACAC : 500 210 : rSerThrSerGlyIlePheGlyLeuSerAlaValLeuAlaAlaHisSerCysGlyGlnLeuA : 230 !|||.!!! !.!!:!!.!..!!|||!!!::!!.!|||.!!:!!|||:!!! !|||||||||. rSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuG 499 : CAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGG : 437 231 : snValIleMetValTrpIleThrGluPheValAsnLysAlaArgGluArgThrLysThrGly : 250 .!|||:!!|||:!!! !||| !!!:||||||!:! ! ||||||...||| !||| !! ! lyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLysAspAsp 436 : GCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAGGACGAT : 377 251 : AsnPheIleGluIleGlyMetIleValGluArgHisLeuArgThrLeu{As} >>>> Tar : 267 :!!||| !|||||| !! |||||||||!:!|||||||||..!|||{||} HisPheAspGluIleProThrIleValGluLysHisLeuArgValLeu{As}++ 376 : CATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG{AA}gt........ : 322 268 : get Intron 1 >>>> {n}PheIleSerCysIleGluAspValMetPheLysIleTyrP : 281 68 bp {|}||||||||| !!||||||! :!!!!: !||| ! !| ++{n}PheIleSerArgIleGluAlaMetIleAsnLysAlaCysP 321 : .................ag{C}TTCATATCGCGCATAGAGGCAATGATAAACAAAGCGTGTT : 216 282 : heValGluMetPheArgSerThrMetAspIleCysValIleGlyTyrTyrIle : 298 ||:!!|||:!: |||!!!|||!!:! !|||||||||:!!|||||||||||| heLeuGluLeuThrArgCysThrIleAlaIleCysValLeuGlyTyrTyrIle 215 : TCCTGGAGTTAACGAGGTGCACGATAGCTATATGCGTACTTGGATATTATATA : 163 vulgar: gi|350422517|ref|XP_003493188.1| 3 298 . LHQN01028641.1 1112 162 - 636 M 35 105 G 2 0 M 130 390 G 0 3 M 96 288 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 163 1112 636 - . gene_id 1 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1112 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1112 . - . insertions 3 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 163 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 163 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 163 1112 636 - . alignment_id 1 ; Query gi|350422517|ref|XP_003493188.1| ; Align 1113 4 105 ; Align 1008 41 390 ; Align 615 171 288 ; Align 256 268 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 636 Query range: 1 -> 273 Target range: 1118 -> 305 2 : ThrAsnLysThrValAlaIleLysIleAspPheAspGlyArgSerAspTyrSerLeuGlnLe : 22 !.!:!!|||||||||!.!! !:!!|||:!!.!. !!.!!!!||||||||||||||||||! AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTr 1118 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTG : 1058 23 : uAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerPheProSerThrSerArgLeuG : 43 !||||||||| :!!||| !|||||||||||||||..! |||:!!|||!.!|||| pAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGln------SerSerSerAsnLeuG 1057 : GAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAG------TCCTCGTCGAATCTCG : 1001 44 : luArgIleMetSerPheValLeuIleValIleCysTyrIleIleLeuIleCysThrIleIle : 63 ||||||||!!:||| :!!|||! !||||||||||||! ! !:!!:!!! !||||||||| luArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIle 1000 : AGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATC : 941 64 : ProCysLeuLeuHisIleIleLeuGluAsnGluSerPheArgIleLysLeuArgLeuIleGl : 84 ||||||! !||||||:!!!!:||||||!!.|||!!!||| !! |||:!!!:!:!!:!!|| ProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGl 940 : CCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGG : 878 85 : yProValSerTyrLeuCysValGlySerIleAsnTyrThrThrLeuLeuLeuArgGlyLysA : 105 ||||:!!|||:!!! ! !! !!! !|||!:!||||||! !|||||||||||| !!||| yProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysT 877 : TCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAA : 815 106 : spIleArgTyrCysValGluHisMetGlnThrAspTrpArgThrValLysArgGluLysAsp : 125 !||||||:!!! ! !!.!.||||||:!!|||||||||||||||..!! |||:::::: hrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLys 814 : CCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaag : 755 126 : GlnGlnValMetLeuLysSerAlaLysPheGlyArgTyrValThrAlaSerThrAlaAlaPh : 146 :::::::::|||||||||! !|||||||||.!!||||||!.!.!! !||| !.!! !|| LysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePh 754 : aaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTT : 692 147 : eMetGlnGlyGlyValPheCysTyrCysPheMetThrAlaLeuSerThrGluValIleGlnV : 167 |!!:!!.||||||:!!.!! ! |||||| !!|||||||||!!!!!!||| !|||:!! !| eIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValV 691 : CATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGG : 629 168 : alGlyAsnGluThrArgIleValHisGlnLeuProTyrValIleTyrLysGluLeuIleAsp : 187 ||||||||||||||! !|||:!!!.! !||||||! !!!:||||||! !|||:!! alGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuPro 628 : TTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCA : 569 188 : IleAsnGluSerProThrAsnGluIleIleLeuPheMetGlnPheLeuThrGlyPheIleVa : 208 :!!:!! !!:! !!! !|||||||||:!!|||!!. |||||||||:!!|||||||||!. ValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAl 568 : GTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGC : 506 209 : lSerSerSerThrLeuGlyIleLeuSerIleThrValValLeuIleAlaHisAlaCysGlyG : 229 !!:!!!!|||.!!:!!.!!:!!:!!|||:!!||| !!.!|||! !:!!||||||! !|||| aAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyG 505 : GAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCC : 443 230 : lnLeuAsnValValMetThrTrpIleThrGluPheValAsnGluSerArgLysGlu<->Lys : 248 |||||..!||||||||| !! !||| !!!:||||||!:!!!::!!|||:::..! ||| lnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLys 442 : AGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAG : 383 249 : IleAlaProPheGluAsnIleGlyIleIleValGluArgHisLeuArgThrLeuSerPheVa : 269 !! !! !|||!!:.!.||| !! !|||||||||!:!|||||||||..!|||!.!! || AspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeuLys***Va 382 : GACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTGAAGTAAGT : 320 270 : lSerSerIleGlu : 273 |!!!! !:!:!!: lCysLeuLeuAsp 319 : ATGTTTGTTGGAT : 306 vulgar: gi|350422503|ref|XP_003493183.1| 1 273 . LHQN01028641.1 1118 305 - 636 M 34 102 G 2 0 M 210 630 G 0 3 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 306 1118 636 - . gene_id 1 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 306 1118 . - . LHQN01028641.1 exonerate:protein2genome:local exon 306 1118 . - . insertions 3 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local similarity 306 1118 636 - . alignment_id 1 ; Query gi|350422503|ref|XP_003493183.1| ; Align 1119 2 102 ; Align 1017 38 630 ; Align 384 248 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 530 Query range: 1 -> 285 Target range: 1118 -> 269 2 : ThrAspAspProValThrValGluArgLysPheGlySerLeuSerGluTyrSerIleGlnVa : 22 !.!||| ! !!|||..!..!|||! !!!..!. !:!! !|||!!:||||||:!!||| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTr 1118 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTG : 1058 23 : lAsnArgTrpIleLeuLysProIleGlyAlaTrpProSerSerAsnSerThrThrAsnArgG : 43 !||||||||| :!!||| !|||||||||||||||..!|||:::||| |||! !| pAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSerSer------AsnLeuG 1057 : GAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCGTCG------AATCTCG : 1001 44 : luLysPheMetSerTrpIleLeuAsnValIleCysTrpCysPheSerLeuPheThrIleIle : 63 ||!:!.!!!!:||| ! ||||||||||||||||||!:: ! !||||||||||||||| luArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIle 1000 : AGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATC : 941 64 : ProGlyValLeuAsnIleLeuLeuGluLysGluAspLeuTyrLeuLysLeuLysMetPheGl : 84 ||| !! !|||:!!:!!:!!|||||||||||| !!!!||| !|||:!!|||!!:.!!|| ProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGl 940 : CCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGG : 878 85 : yProLeuSerHisTrpCysValGlyGlyPheAsnTyrAlaValLeuLeuLeuArgGlnGlyA : 105 |||||||||||||||| !! !! !.!!!:!|||.!!:!!||||||||||||!:: ! yProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysT 877 : TCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAA : 815 106 : spIleHisTyrCysIleLysHisIleArgThrAspTrpLysThrIleThrArgLeuGluAsp : 125 !|||!.!:!!! !.!!!!.|||!!:..!|||||||||!:!|||! ! ||| ||| hrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLys 814 : CCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaag : 755 126 : GlnArgIleMetLeuLysAsnAlaLysLeuGlyArgTyrIleAlaCysPheCysAlaAlaPh : 146 :::...|||||||||||| !!||||||!!!.!!|||||| ||| !! !|||.!! !|| LysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePh 754 : aaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTT : 692 147 : eMetHisGlySerValPheCysThrCysLeuValLeuGlyAlaPheLysArgThrIleGluV : 167 |!!:||||||.!!:!!.!! ! !|||:!!:!! !!.! ! !! !! !..!:!!! !| eIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValV 691 : CATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGG : 629 168 : alArgAsnGluThrIleLeuValTyrThrLeuProCysProAlaTyrLys<-><->LeuPro : 185 || !!|||||||||!!::!!:!! !..!||||||! ||| !|||||| |||||| alGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuPro 628 : TTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCA : 569 186 : ValGlnThrAsnProGlyHisAspIleIleLeuGlyThrGlnPheLeuSerAlaPheIleAl : 206 |||.!.|||||| !! !:!!!!:|||:!!||| !:!!||||||||||||!.!|||||||| ValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAl 568 : GTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGC : 506 207 : aThrSerSerAlaAlaGlyAlaPheSerLeuAlaThrValPheAlaSerHisAlaLeuGlyG : 227 |!.!!!!|||||| !.!!!.!.!.||||||.!!!:!!.!.!..!!|||||||||! !|||| aAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyG 505 : GAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCC : 443 228 : lnLeuAsnIleMetValThrTrpIleAsnGluPheValAsnGlnHisSerLysAspGlnAsn : 247 |||||..!:!::!::!! !! !|||.!.!!:||||||!:!.!. :!!!:! !::!... lnLeuGlyValValMetLeuSerIleGluAspPheValSerAsp---AlaArgArgArgGly 442 : AGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAT---GCGAGACGCAGAGGG : 386 248 : SerAsnAlaArgAlaAsnLysIleGlyValIleValGluHisHisLeuArgAlaLeuSerLe : 268 !.!:!!! !!.! !:!!:!!||| !..!||||||||| ! |||||||||!.!|||!.!! LysAspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeuLys** 385 : AAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTGAAGTA : 323 269 : uIleAlaArgIleGluArgIleMetSerProIleCysPheMetGluMetPhe : 285 !:!!..! !:!:!!: !|||:!! !! ! ! |||:!: ! !||| *ValCysLeuLeuAspLeuIleLeuProMetGlyValPheLeu***SerPhe 322 : AGTATGTTTGTTGGATTTGATTTTGCCGATGGGTGTGTTTCTCTGATCGTTT : 270 vulgar: gi|350412835|ref|XP_003489780.1| 1 285 . LHQN01028641.1 1118 269 - 530 M 37 111 G 2 0 M 143 429 G 0 6 M 58 174 G 1 0 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 270 1118 530 - . gene_id 1 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 270 1118 . - . LHQN01028641.1 exonerate:protein2genome:local exon 270 1118 . - . insertions 6 ; deletions 3 LHQN01028641.1 exonerate:protein2genome:local similarity 270 1118 530 - . alignment_id 1 ; Query gi|350412835|ref|XP_003489780.1| ; Align 1119 2 111 ; Align 1008 41 429 ; Align 573 184 174 ; Align 399 243 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 464 Query range: 2 -> 284 Target range: 1115 -> 269 3 : AspGluLeuValAlaAlaLysLysLysTyrGlyAsnLeuGlyGluTyrSerValGlnLeuSe : 23 |||:!! !|||!.!.!!:!!! !!. ! ! !.!!!!:||||||:!!|||! !!: AspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAs 1115 : GACAAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTGGAA : 1055 24 : rArgTrpTyrLeuArgProMetGlyAlaTrpProAsnSerProSerThrThrArgArgGluL : 44 !|||||| :!!!:! !!!:||||||||||||.!.||| !!|||!.! ! |||! nArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSerSerAsnLeu------GluA 1054 : TCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCGTCGAATCTC------GAGA : 998 45 : ysIleLeuAlaGlnIleSerIleValIleCysTrpCysIleValLeuPheThrIleValPro : 64 :!|||:!!:!!!:!|||! !! !|||||||||!:: ! !|||||||||||||||:!!||| rgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIlePro 997 : GAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATCCCT : 938 65 : GlyPheLeuHisIleIleLeuValLysGluAspIleTyrLeuLysLeuLysThrLeuGlyPr : 85 !!! ||||||:!!!!:|||! !|||||| !.!!||| !|||:!!|||! !|||||||| CysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGlyPr 937 : TGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGGTCC : 875 86 : oLeuSerHisTrpCysValAspGlyPheAsnTyrAlaValLeuLeuLeuArgGlnGluAspI : 106 ||||||||||||| !! ! !.!!!:!|||.!!:!!||||||||||||!:::!! !| oLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrI 874 : GTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCA : 812 107 : leAsnTyrCysIleGluArgValArgSerAspTrpLysMetIleThrArgValGlnAspArg : 126 ||..!:!!! !.!!.!.!.!:!!..!!!!||||||!:!! !! ! ||| ::: ::: leArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLysLys 811 : TACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaagaaa : 752 127 : TyrGluMetTrpLysAsnAlaLysLeuGlyArgTyrValAlaGlyPheCysAlaGlyPheMe : 147 ||| !||| !!||||||!!!.!!||||||!.!||| !! !|||.!! !|||!! GluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIl 751 : gaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCAT : 689 148 : tGlnGlyThrMetIleTyrThrCysValValLeuGlyAlaPheArgArgThrIleLysValG : 168 :!!.||| !!!::!! !||||||:!! !!.! ! !! !! !..!:!! !|||| eHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValValG 688 : ACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTG : 626 169 : lyAsnGluThrMetAspIleTyrThrLeuProCysProAlaTyrLys<-><->PheAlaVal : 186 |||||||||||||| !:!: !..!||||||! ||| !|||||| .!! !!||| lyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProVal 625 : GAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTC : 566 187 : GlnThrAsnProThrHisAspIleIleLeuGlyThrGlnPheLeuSerAlaLeuValValSe : 207 .!.|||||| !!! !:!!!!:|||:!!||| !:!!||||||||||||!.!!!!:!!!.!!: AspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAs 565 : GATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAA : 503 208 : rSerGlyAlaAlaGlySerPheSerLeuAlaThrValPheAlaSerHisAlaLeuGlyGlnL : 228 !!!!.!!||| !.!! !.!.||||||.!!!:!!.!.!..!!|||||||||! !||||||| nThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnL 502 : CACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGT : 440 229 : euAsnIleMetValThrTrpValAspGluPheThrAsnGlnThrLysGlnGlnAsnLysGln : 248 ||..!:!::!::!! !! !:!!!!:!!:|||..!!:!.!..!!!:!!::::!...|||.!. euGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLysAsp 439 : TGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAGGAC : 380 249 : AlaGlnIleAsnLysIleGlyValIleValGluHisHisLeuArgValLeuSerLeuIleAl : 269 ! !!!..!!:!!:!!||| !..!||||||||| ! |||||||||||||||!.!! !:!!.. AspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeuLys***ValCy 379 : GATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTGAAGTAAGTATG : 317 270 : aArgIleGluArgIleMetSerProIleCysPheMetGluMetPhe : 284 ! !:!:!!: !|||:!! !! ! ! |||:!: ! !||| sLeuLeuAspLeuIleLeuProMetGlyValPheLeu***SerPhe 316 : TTTGTTGGATTTGATTTTGCCGATGGGTGTGTTTCTCTGATCGTTT : 270 vulgar: gi|350412806|ref|XP_003489770.1| 2 284 . LHQN01028641.1 1115 269 - 464 M 38 114 G 2 0 M 141 423 G 0 6 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 270 1115 464 - . gene_id 1 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 270 1115 . - . LHQN01028641.1 exonerate:protein2genome:local exon 270 1115 . - . insertions 6 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local similarity 270 1115 464 - . alignment_id 1 ; Query gi|350412806|ref|XP_003489770.1| ; Align 1116 3 114 ; Align 1002 43 423 ; Align 573 184 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 274 Query range: 23 -> 271 Target range: 1070 -> 323 24 : TyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpProLeuValSerAs : 44 |||!:!|||||| ! !!:!||| !:!!||| !||||||!.!|||||| .! TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpPro---------Gl 1070 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCA---------CA : 1019 45 : nHisThrSerLysLeuGluGlnLeuValSerValIleLeuMetIleMetCysPheSerSerL : 65 . !:!!|||!!.||||||::!:!!:!!||| !||||||! :!:!!:|||!:!!!!:!!: nSerSerSerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaV 1018 : GTCCTCGTCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAG : 956 66 : euLeuPheIleIleLeuProSerPheTyrHisIlePhePheValGluLysSerValHisVal : 85 !!||||||! |||:!!|||!!!! |||:!!.!..!.! !:!!:!!!!! !!:!!..! alLeuPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThr 955 : TACTATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACG : 896 86 : LysValLysLeuLeuGlyProValGlyPheCysLeuSerSerThrIleLysTyrCysTyrLe : 106 |||||||||:!!|||||||||:!!.!! !!! :!!! !!!!! !|||!..||| ! || LysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLe 895 : AAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCT : 833 107 : uGlyValLysGlyAlaPhePheGluArgCysIleGlnHisValGluLysAspTrpLysMetV : 127 | !:!!::! !! ! !.!....!.!! !.!!.!.|||:!!|||! ||||||!:!! !. uLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrT 832 : GTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGA : 770 128 : alGlnAspProAsnHisArgThrIleMetLeuLysTyrAlaThrValSerArgLysLeuIle : 147 .!... ... ::: ||||||||||||||||||! ! !!|||||| ! ! hrMetArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAla 769 : CGAtgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCG : 710 148 : ThrLeuCysAlaIlePheLeuTyrThrGlyGlyMetSerTyrHisThrValMetGlnPheLe : 168 ! !! !|||.!!||||||:!!:!! !||| !:!:.!!||| !..!:!!! !||| IleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheTh 709 : ATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCAC : 647 169 : uSerLysGluArgAsnLysLysAsnTyrThr<-><->PheArgProLeuThrTyrProGlyT : 187 !!!!! !! ! !||| ! ||| !!.||| !||| !!! ||| !| rThrMetValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetT 646 : CACGATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGT : 584 188 : yrAspSerPheLeuAspThrGlnSerSerProThrTyrGluValValPhePheLeuGlnCys : 207 || ! .!!.!!||| ..!.!.!!!!:! !!! ! !!|||:!!|||.!!!!.! !|||! ! yrLysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPhe 583 : ACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTT : 524 208 : PheAlaAlaMetIleMetTyrSerValThrThrValAlaTyrSerLeuAlaAlaIlePheVa : 228 .!!:!!!.!.!.||| ! !!!!! !.!!! ! !!.! ||||||.!!::! !.!... LeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuTh 523 : CTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAAC : 461 229 : lThrHisIleCysGlyGlnIleGlnValGlnIleAlaArgLeuHisAspLeuValGluAsnG : 249 !:!!||| ! !||||||:!: ||| !!: ! !:!!.!.|||!!!|||...:!!! rSerHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspA 460 : ATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATG : 398 250 : luLysArg<-><->LysAsnAsnGlyArgAspSerMetSerValIleValHisAspHisVal : 267 !!:!||| |||:!!:!! ! !|||..!!!: !!..!||||||.!. ! |||:!! laArgArgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHisLeu 397 : CGAGACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTG : 338 268 : GluValLeuArg : 271 ..!||||||!:! ArgValLeuLys 337 : AGAGTGTTGAAG : 324 vulgar: gi|350412763|ref|XP_003489754.1| 23 271 . LHQN01028641.1 1070 323 - 274 M 17 51 G 3 0 M 135 405 G 0 6 M 73 219 G 0 6 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 324 1070 274 - . gene_id 1 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 324 1070 . - . LHQN01028641.1 exonerate:protein2genome:local exon 324 1070 . - . insertions 12 ; deletions 3 LHQN01028641.1 exonerate:protein2genome:local similarity 324 1070 274 - . alignment_id 1 ; Query gi|350412763|ref|XP_003489754.1| ; Align 1071 24 51 ; Align 1020 44 405 ; Align 609 179 219 ; Align 384 252 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 387 Query range: 1 -> 165 Target range: 381 -> 867 2 : ThrAsnLysThrValAlaIleLysIleAspPheAspGlyArgSerAspTyrSerLeuGlnLeuA : 23 !.!:!!|||||||||!.!! !:!!|||:!!.!. !!.!!!!||||||||||||||||||! !| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpA 382 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGA : 445 24 : snArgTrpPheLeuLysProIleGlyAlaTrpProSerPheProSerThrSerArgLeuGluAr : 44 |||||||| :!!||| !||||||.!!||||||..!||| :!!|||!.!|||||||| snArgTrpAlaMetLysSerIleGlyThrTrpProGlnPhe------SerSerAsnLeuGluAr 446 : ATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTC------TCGTCGAACCTCGAGAG : 502 45 : gIleMetSerPheValLeuIleValIleCysTyrIleIleLeuIleCysThrIleIleProCys : 65 |! !!!:||| :!!|||! !||||||||||||! ! !:!!:!!! !:!!|||||||||||| gAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCys 503 : AAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGT : 565 66 : LeuLeuHisIleIleLeuGluAsnGluSerPheArgIleLysLeuArgLeuIleGlyProValS : 87 ! !||||||:!!!!:||||||!!.! !!!!||| !! |||:!!!:!:!!:!!||| !!:!!| SerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuS 566 : TCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGA : 631 88 : erTyrLeuCysValGlySerIleAsnTyrThrThrLeuLeuLeuArgGlyLysAspIleArgTy : 108 ||:!!! ! !! !!! !|||!:!||||||! !|||||||||||| !!||| !|||!.!:! erHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHi 632 : GCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCA : 694 109 : rCysValGluHisMetGlnThrAspTrpArgThrValLysArgGluLysAspGlnGlnValMet : 129 !! !|||.!.||||||:!!|||||||||||||||..! |||:::::: ::::::|||||| sPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMet 695 : CTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATG : 757 130 : LeuLysSerAlaLysPheGlyArgTyrValThrAlaSerThrAlaAlaPheMetGlnGlyGlyV : 151 ||||||! !|||||||||.!!||||||!.!.!! !! ! !||| !|||!!:!!.||||||: LeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyI 758 : TTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACACGGTGGTA : 823 152 : alPheCysTyrCysPheMetThrAlaLeuSerThrGluValIle : 165 !!.!! ! |||||| !!|||||||||! !!!!||| !|||:!! leLeuGlyTyrCysValMetThrAlaSerThrThrMetValVal 824 : TACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTC : 867 vulgar: gi|350422503|ref|XP_003493183.1| 1 165 . LHQN01028951.1 381 867 + 387 M 35 105 G 2 0 M 127 381 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 382 867 387 + . gene_id 1 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 382 867 . + . LHQN01028951.1 exonerate:protein2genome:local exon 382 867 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 382 867 387 + . alignment_id 1 ; Query gi|350422503|ref|XP_003493183.1| ; Align 382 2 105 ; Align 487 39 381 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 401 Query range: 1 -> 162 Target range: 381 -> 858 2 : ThrAsnGluProValIleThrGluGlyAspSerAsnSerAsnSerAspTyrSerLeuGlnLeuA : 23 !.!:!!:!! !!|||:!!|||||| !:!!! !!.!:!!!:!||||||||||||||||||! !| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpA 382 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGA : 445 24 : snArgTrpPheLeuLysProIleGlyAlaTrpProSerSerSerSerThrThrArgLeuGluLy : 44 |||||||| :!!||| !||||||.!!||||||..!! !|||||| !.!||||||!: snArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSer------AsnLeuGluAr 446 : ATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCG------AACCTCGAGAG : 502 45 : sIleValSerPheIleLeuAsnIleIleCysPheThrSerValIleValThrAlaIleProSer : 65 !! !:!!||| |||||||||:!:||||||!:!|||:!!:!!:!! !!:!! !||||||!!! gAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCys 503 : AAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGT : 565 66 : LeuLeuLeuMetIleLeuGluAspGluSerIleTyrMetLysLeuLysThrLeuGlyProValS : 87 ! !|||! !:!:!!:|||||| ! ! !!!!.!!|||! !|||:!!|||! !|||||| !!:!!| SerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuS 566 : TCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGA : 631 88 : erHisTrpPheValSerSerAlaAsnTyrThrAlaLeuLeuIleArgGlyArgAspIleArgHi : 108 |||||||| ! !!!!!! ! !!:!|||||| !||||||:!:||| !!!:! !|||!.!|| erHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHi 632 : GCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCA : 694 109 : sCysValGluHisIleGluAlaAspTrpArgThrValThrArgGluGluAspGlnHisValMet : 129 |! !|||.!.|||!!:|||.!!||||||||||||..!||||||:::||| :::...|||||| sPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMet 695 : CTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATG : 757 130 : MetLysAsnAlaLysPheGlyArgTyrValAlaAlaSerCysAlaValPheMetGlnGlyGlyV : 151 :!!||| !!|||||||||.!!||||||!.!||| !! !||||||:!!|||!!:!!.||||||: LeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyI 758 : TTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACACGGTGGTA : 823 152 : alLeuCysPheCysPheValThrAlaLeuThrThr : 162 !!||| ! !:!||| !!:!!||||||! !|||||| leLeuGlyTyrCysValMetThrAlaSerThrThr 824 : TACTTGGATATTGTGTTATGACAGCGTCCACCACG : 858 vulgar: gi|350422508|ref|XP_003493185.1| 1 162 . LHQN01028951.1 381 858 + 401 M 37 111 G 2 0 M 122 366 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 382 858 401 + . gene_id 1 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 382 858 . + . LHQN01028951.1 exonerate:protein2genome:local exon 382 858 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 382 858 401 + . alignment_id 1 ; Query gi|350422508|ref|XP_003493185.1| ; Align 382 2 111 ; Align 493 41 366 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 343 Query range: 3 -> 163 Target range: 387 -> 861 4 : GluAlaValIleValGluSerAspSerAsnSerAsnSerAspTyrSerLeuGlnLeuAsnArgT : 25 :!!.!!|||:!!..!|||! !:!!! !!.!:!!!:!||||||||||||||||||! !||||||| LysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgT 388 : AAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGAT : 451 26 : rpPheLeuGlnSerIleGlyAlaTrpProSerSerAlaSerThrThrLysLeuGluLysIleVa : 46 || :!!:!!|||||||||.!!||||||..!! !:!!||| !!.||||||!:!! !:! rpAlaMetLysSerIleGlyThrTrpProGlnPheSerSer------AsnLeuGluArgAsnIl 452 : GGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCG------AACCTCGAGAGAAACAT : 508 47 : lSerPheIleLeuAsnIleValCysLeuSerIleValIleLeuAlaValIleProSerLeuLeu : 67 !||| |||||||||:!::!!|||! !!!! !:!!:!!!!!:!!:!!||||||!!!! !||| eSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeu 509 : CTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTG : 571 68 : LeuMetIleLeuGlyAspGluSerPheAsnPheLysLeuLysMetPheGlyTyrValSerHisT : 89 ! !:!:!!:|||! ! ! ! !!!!||| !! |||:!!|||!!:.!!|||! :!!||||||| HisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisT 572 : CACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACT : 637 90 : rpIlePheSerGlyIleAsnTyrThrAlaLeuLeuThrHisGlyLysAsnIleArgGlnCysIl : 110 ||:!:|||!!! !|||!:!|||||| !|||||| !!.. !!|||!.!|||!.!!!.! !:! rpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPheVa 638 : GGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTTTGT : 700 111 : eGluHisIleGluAlaAspTrpArgThrValThrArgGluGluAspLysAsnValMetLeuLys : 131 !.!.|||!!:|||.!!||||||||||||..!||||||:::||| |||...|||||||||||| lAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLys 701 : CAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAG : 763 132 : AsnAlaLysLeuGlyArgTyrIleAlaGlyPheSerValIlePheValGlnGlySerValLeuC : 153 !!||||||!!!.!!|||||| ||| !|||!!!!.!||||||:!!!!.|||.!!:!!||| TyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleLeuG 764 : TACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACACGGTGGTATACTTG : 829 154 : ysPhePhePheAlaAlaAlaLeuSerThrVal : 163 ! !:!! ! !! !.!!|||! !!!!|||:!! lyTyrCysValMetThrAlaSerThrThrMet 830 : GATATTGTGTTATGACAGCGTCCACCACGATG : 861 vulgar: gi|350422517|ref|XP_003493188.1| 3 163 . LHQN01028951.1 387 861 + 343 M 35 105 G 2 0 M 123 369 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 388 861 343 + . gene_id 1 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 388 861 . + . LHQN01028951.1 exonerate:protein2genome:local exon 388 861 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 388 861 343 + . alignment_id 1 ; Query gi|350422517|ref|XP_003493188.1| ; Align 388 4 105 ; Align 493 41 369 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 392 Query range: 1 -> 165 Target range: 381 -> 867 2 : ThrAsnLysSerAlaValValGluLysThrPheAspSerLeuGlyAspTyrSerLeuGlnPheA : 23 !.!:!!|||!!!!.!|||..!|||! !.!.!. !:!! !.!!|||||||||||||||!::| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpA 382 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGA : 445 24 : snArgTrpLeuLeuIleSerIleGlyAlaTrpProAlaSerThrSerThrSerArgArgGluAr : 44 |||||||| !:!!! !|||||||||.!!|||||| !! !:!!|||!.!! !||||| snArgTrpAlaMetLysSerIleGlyThrTrpPro------GlnPheSerSerAsnLeuGluAr 446 : ATCGATGGGCGATGAAAAGCATAGGCACATGGCCA------CAGTTCTCGTCGAACCTCGAGAG : 502 45 : gIleIleSerPheIleLeuIleAlaLeuCysTyrGlyPheIleLeuPheThrValIleProCys : 65 |! !|||||| ||||||! !!.!:!!|||||| ! |||||||||:!!:!!||||||||| gAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCys 503 : AAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGT : 565 66 : IlePheHisPheIleLeuGluAspGluSerIleTyrMetLysLeuLysValPheGlyProLeuS : 87 !!.|||.!.!!:|||||| ! ! !!!!.!!|||! !|||:!!|||:!!.!!||| !!|||| SerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuS 566 : TCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGA : 631 88 : erHisTrpPheIleGlyGlyIleAsnTyrThrAsnLeuLeuLeuArgSerAsnGluIleArgAs : 108 |||||||| ! .!! !! !|||!:!||||||! |||||||||||| !!!!. |||!.! ! erHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHi 632 : GCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCA : 694 109 : pCysIleHisHisValGlnThrAspTrpLysIleValThrArgProGluAspSerGlnValMet : 129 !! !:!!:!!|||:!!:!!|||||||||!:!! ..!|||||| ||| ...:::|||||| sPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMet 695 : CTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATG : 757 130 : MetLysTyrAlaArgIleGlyArgPheIleAlaAlaPheCysAlaThrPheMetGlnGlyGlyV : 151 :!!|||||||||!:!.!!.!!|||!:! ||| !|||||||||! !|||!!:!!.||||||: LeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyI 758 : TTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACACGGTGGTA : 823 152 : alLeuThrTyrCysValValThrAlaPheAlaThrGlnThrIle : 165 !!||| !|||||||||:!!||||||! !.!!|||..!..!:!! leLeuGlyTyrCysValMetThrAlaSerThrThrMetValVal 824 : TACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTC : 867 vulgar: gi|350422500|ref|XP_003493182.1| 1 165 . LHQN01028951.1 381 867 + 392 M 33 99 G 2 0 M 129 387 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 382 867 392 + . gene_id 1 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 382 867 . + . LHQN01028951.1 exonerate:protein2genome:local exon 382 867 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 382 867 392 + . alignment_id 1 ; Query gi|350422500|ref|XP_003493182.1| ; Align 382 2 99 ; Align 481 37 387 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 355 Query range: 1 -> 157 Target range: 381 -> 843 2 : ThrAspAspProValThrValGluArgLysPheGlySerLeuSerGluTyrSerIleGlnValA : 23 !.!||| ! !!|||..!..!|||! !!!..!. !:!! !|||!!:||||||:!!||| !| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpA 382 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGA : 445 24 : snArgTrpIleLeuLysProIleGlyAlaTrpProSerSerAsnSerThrThrAsnArgGluLy : 44 |||||||| :!!||| !||||||.!!||||||..!! !:::||| |||! !|||!: snArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSer------AsnLeuGluAr 446 : ATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCG------AACCTCGAGAG : 502 45 : sPheMetSerTrpIleLeuAsnValIleCysTrpCysPheSerLeuPheThrIleIleProGly : 65 ! !!!:||| ! ||||||||||||||||||!:: ! ! !||||||:!!||||||||| !! gAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCys 503 : AAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGT : 565 66 : ValLeuAsnIleLeuLeuGluLysGluAspLeuTyrLeuLysLeuLysMetPheGlyProLeuS : 87 !|||:!!:!!:!!|||||||||! ! !!!!||| !|||:!!|||!!:.!!||| !!|||| SerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuS 566 : TCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGA : 631 88 : erHisTrpCysValGlyGlyPheAsnTyrAlaValLeuLeuLeuArgGlnGlyAspIleHisTy : 108 |||||||| !! !! !.!!!:!|||.!!:!!||||||||||||!:: ! !||||||:! erHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHi 632 : GCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCA : 694 109 : rCysIleLysHisIleArgThrAspTrpLysThrIleThrArgLeuGluAspGlnArgIleMet : 129 !! !:!!!!.|||!!:..!|||||||||!:!|||! |||||| ||| :::...:::||| sPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMet 695 : CTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATG : 757 130 : LeuLysAsnAlaLysLeuGlyArgTyrIleAlaCysPheCysAlaAlaPheMetHisGlySerV : 151 |||||| !!||||||!!!.!!|||||| ||| !||||||||| !|||!!:||||||.!!: LeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyI 758 : TTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACACGGTGGTA : 823 152 : alPheCysThrCysLeuVal : 157 !!.!! ! !|||:!!:!! leLeuGlyTyrCysValMet 824 : TACTTGGATATTGTGTTATG : 843 vulgar: gi|350412835|ref|XP_003489780.1| 1 157 . LHQN01028951.1 381 843 + 355 M 37 111 G 2 0 M 117 351 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 382 843 355 + . gene_id 1 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 382 843 . + . LHQN01028951.1 exonerate:protein2genome:local exon 382 843 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 382 843 355 + . alignment_id 1 ; Query gi|350412835|ref|XP_003489780.1| ; Align 382 2 111 ; Align 493 41 351 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412763|ref|XP_003489754.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 213 Query range: 23 -> 161 Target range: 429 -> 834 24 : TyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpProLeuValSerAsnH : 45 |||!:!|||||| ! !!:!||| !:!!||| !||||||..!||||||! ! !!||| TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSer---- 430 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCG---- : 490 46 : isThrSerLysLeuGluGlnLeuValSerValIleLeuMetIleMetCysPheSerSerLeuLe : 66 |||!!.||||||::! !:!!||| !||||||! :!:!!:|||!:!!!!:!!:!!|| -----SerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLe 491 : -----TCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACT : 547 67 : uPheIleIleLeuProSerPheTyrHisIlePhePheValGluLysSerValHisValLysVal : 87 |||| |||:!!|||!!!! ! |||:!!.!..!.! !:!! !!!! !!:!!..!|||||| uPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysVal 548 : ATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTG : 610 88 : LysLeuLeuGlyProValGlyPheCysLeuSerSerThrIleLysTyrCysTyrLeuGlyValL : 109 |||:!!|||||| !!:!!.!! !!! :!!! !!!!! !|||!..||| ! ||| !:!!: LysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuA 611 : AAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGC : 676 110 : ysGlyAlaPhePheGluArgCysIleGlnHisValGluLysAspTrpLysMetValGlnAspPr : 130 :! !! ! !.!..!.!.!! !:!!.!.|||:!!|||! ||||||!:!! !..! rgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLy 677 : GACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaa : 739 131 : oAsnHisArgThrIleMetLeuLysTyrAlaThrValSerArgLysLeuIleThrLeuCysAla : 151 ... ::: :::|||||||||||||||! ! !!|||||| ! ! ! !!!!|||||| sGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAla 740 : ggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCG : 802 152 : IlePheLeuTyrThrGlyGlyMetSerTyr : 161 ||||||:!!:!! !||| !:!:.!!||| IlePheIleHisGlyGlyIleLeuGlyTyr 803 : ATTTTCATACACGGTGGTATACTTGGATAT : 834 vulgar: gi|350412763|ref|XP_003489754.1| 23 161 . LHQN01028951.1 429 834 + 213 M 20 60 G 3 0 M 115 345 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 430 834 213 + . gene_id 1 ; sequence gi|350412763|ref|XP_003489754.1| ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 430 834 . + . LHQN01028951.1 exonerate:protein2genome:local exon 430 834 . + . insertions 0 ; deletions 3 LHQN01028951.1 exonerate:protein2genome:local similarity 430 834 213 + . alignment_id 1 ; Query gi|350412763|ref|XP_003489754.1| ; Align 430 24 60 ; Align 490 47 345 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 288 Query range: 19 -> 159 Target range: 426 -> 840 20 : GluTyrSerIleGlnValAsnArgTrpLeuMetGlnProIleGlyAlaTrpProLysLeuThrL : 41 !!:||||||:!!||| !||||||||| !|||:!! !||||||.!!||||||:!!!!! AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPhe---- 427 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTC---- : 487 42 : ysThrAsnArgThrGlnArgLeuPheAlaLysLeuLeuAsnPheIleCysHisSerLeuIleIl : 62 :!!:::!.! !:!!||| !.!!:!!::!:!!|||||| ! ||||||:!!!!! !|||:! --SerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLe 488 : --TCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACT : 547 63 : ePheThrIleValProCysIleLeuHisIleValTyrGluAlaGluSerSerArgMetLysMet : 83 !|||:!!|||:!!|||||| ||||||:!!:!! ||| !! !!!!! ! !! !|||:!! uPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysVal 548 : ATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTG : 610 84 : LysIleIleGlyProValSerHisTrpLeuMetGlyGluLeuAsnTyrCysCysLeuLeuSerL : 105 ||||||:!!||| !!:!!|||||||||:!!.!. !! :!!!:!||| ! |||||| !: LysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuA 611 : AAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGC : 676 106 : ysThrAspAspIleIleArgCysIleLysHisValGluArgAspTrpGlnValValGluAsnAl : 126 :! ! ! !||| !!.!! !:!!!!.|||:!!|||! !||||||::!..!..! ... rgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLy 677 : GACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaa : 739 127 : aSerSerArgGluMetMetLeuLysTyrAlaLysValGlyArgPheIleAlaPheIleAlaAla : 147 ......:::|||:::|||||||||||||||||| !!.!!|||!:! |||.!!.!!..!||| sGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAla 740 : ggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCG : 802 148 : PheCysMetHisSerGlyValLeuAlaPheSerIle : 159 .!!! !!!:|||.!!|||:!!|||!.!!:!!!!:!! IlePheIleHisGlyGlyIleLeuGlyTyrCysVal 803 : ATTTTCATACACGGTGGTATACTTGGATATTGTGTT : 840 vulgar: gi|350422520|ref|XP_003493189.1| 19 159 . LHQN01028951.1 426 840 + 288 M 20 60 G 2 0 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 427 840 288 + . gene_id 1 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 427 840 . + . LHQN01028951.1 exonerate:protein2genome:local exon 427 840 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 427 840 288 + . alignment_id 1 ; Query gi|350422520|ref|XP_003493189.1| ; Align 427 20 60 ; Align 487 42 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 335 -> 380 Target range: 212 -> 77 336 : GluGlnCysGlnLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAsnLysV : 357 |||:!! ! |||||||||! ! !||||||||||||.!.|||||| ||| !!.!.|||. GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 358 : alIleLeuAspLeuIleLeuIleIleAlaArgSerSerThrValValHisLeuThrAlaGlyLy : 378 .! !|||! !!!!:!!:!!||||||:!!|||||||||! !|||:!! ! :!!||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 379 : sPheIle : 380 ||||:!! sPheVal 85 : ATTCGTA : 78 vulgar: gi|350422517|ref|XP_003493188.1| 335 380 . LHQN01029187.1 212 77 - 126 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 78 212 126 - . gene_id 1 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 78 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 78 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 78 212 126 - . alignment_id 1 ; Query gi|350422517|ref|XP_003493188.1| ; Align 213 336 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 334 -> 380 Target range: 215 -> 77 335 : MetGluLysCysLysLysIleGlyAspMetValTyrMetAlaAspTrpHisHisLeuProAspG : 356 !!:|||:!! !! |||:!!|||! ! |||||||||.!!!!:|||:!!!..||| !!.!.: IleGluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnL 215 : ATCGAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAA : 152 357 : lnAspIleIleAsnLeuIleMetIleIleSerArgSerSerMetGluValLysIleThrAlaGl : 377 !! ! !:!!..!!!!:!!||||||||||||||||||||||||! !:!!|||||||||||||| ysThrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGl 151 : AAACTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGG : 89 378 : yLysIleIle : 380 ||||.!!:!! yLysPheVal 88 : AAAATTCGTA : 78 vulgar: gi|350412835|ref|XP_003489780.1| 334 380 . LHQN01029187.1 215 77 - 123 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 78 215 123 - . gene_id 1 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 78 215 . - . LHQN01029187.1 exonerate:protein2genome:local exon 78 215 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 78 215 123 - . alignment_id 1 ; Query gi|350412835|ref|XP_003489780.1| ; Align 216 335 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 336 -> 382 Target range: 212 -> 74 337 : GluGlnCysGlnLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAspLysI : 358 |||:!! ! |||||||||! ! !||||||||||||.!.|||||| ||| !!.!.|||! GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 359 : leIleLeuAspLeuIleLeuIleIleAlaArgSerSerMetValValHisIleThrAlaGlyLy : 379 ! !|||! !!!!:!!:!!||||||:!!|||||||||||||||:!! ! |||||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 380 : sLeuValHis : 382 |!!!|||:!! sPheValTyr 85 : ATTCGTATAC : 75 vulgar: gi|350422508|ref|XP_003493185.1| 336 382 . LHQN01029187.1 212 74 - 130 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 75 212 130 - . gene_id 1 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 75 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 75 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 75 212 130 - . alignment_id 1 ; Query gi|350422508|ref|XP_003493185.1| ; Align 213 337 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 334 -> 379 Target range: 212 -> 77 335 : GluGlnCysGlnLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspLysA : 356 |||:!! ! |||||||||! ! ||||||||||||.!.||||||!:!||| !!.!.|||! GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 357 : snIleLeuSerIleIleMetIleIleSerArgSerHisMetGluValLysIleThrAlaGlyLy : 377 .! !|||.!!.!!:!!|||||||||||||||||| !|||! !:!!||||||||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 378 : sIleIle : 379 |.!!:!! sPheVal 85 : ATTCGTA : 78 vulgar: gi|350412806|ref|XP_003489770.1| 334 379 . LHQN01029187.1 212 77 - 135 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 78 212 135 - . gene_id 1 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 78 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 78 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 78 212 135 - . alignment_id 1 ; Query gi|350412806|ref|XP_003489770.1| ; Align 213 335 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 335 -> 381 Target range: 212 -> 74 336 : GluGlnSerArgLysValGlyAspValValTyrMetAlaAsnTrpTyrTyrLeuThrGluLysA : 357 |||:!!!!!! !|||||||||! !|||||||||.!!.!.|||||| |||:!!:!!|||! GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 358 : rgIleLeuGluLeuIleLeuIleIleMetArgSerSerValValValGluIleThrAlaGlyLy : 378 ! !|||! !!!:!!:!!|||||| |||||||||:!!|||:!!:!!|||||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 379 : sIleIleHis : 381 |.!!:!!:!! sPheValTyr 85 : ATTCGTATAC : 75 vulgar: gi|350422503|ref|XP_003493183.1| 335 381 . LHQN01029187.1 212 74 - 126 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 75 212 126 - . gene_id 1 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 75 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 75 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 75 212 126 - . alignment_id 1 ; Query gi|350422503|ref|XP_003493183.1| ; Align 213 336 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 179 Query range: 338 -> 384 Target range: 215 -> 77 339 : IleGluGlnGlyGluArgValGlyLysLysValTyrMetThrGluTrpTyrArgLeuProHisL : 360 ||||||:!! ! !:!|||||| !|||||||||||||||||||||||||||||| !!!!.| IleGluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnL 215 : ATCGAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAA : 152 361 : ysThrAlaLeuGlyLeuValLeuValIleSerArgSerSerMetValValLysIleThrAlaGl : 381 ||||||||||||||!!!|||:!!:!!|||||||||||||||||||||:!!|||||||||||||| ysThrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGl 151 : AAACTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGG : 89 382 : yLysPheIle : 384 |||||||:!! yLysPheVal 88 : AAAATTCGTA : 78 vulgar: gi|350422520|ref|XP_003493189.1| 338 384 . LHQN01029187.1 215 77 - 179 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 78 215 179 - . gene_id 1 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 78 215 . - . LHQN01029187.1 exonerate:protein2genome:local exon 78 215 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 78 215 179 - . alignment_id 1 ; Query gi|350422520|ref|XP_003493189.1| ; Align 216 339 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 336 -> 382 Target range: 212 -> 74 337 : GluGlnSerLysLysPheGlyAspValValTyrMetThrLysTrpTyrTyrLeuProAsnLysA : 358 |||:!!!!!! ||| !!|||! !||||||||||||:!!|||||| ||| !!.!.||| GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 359 : spIlePheAspLeuIleLeuIleIleThrArgSerAsnSerAlaIleLysIleThrAlaGlyLy : 379 ! !.!!! !!!!:!!:!!||||||:!!||||||!:!! !!.!|||||||||||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 380 : sIleThrHis : 382 |.!!..!:!! sPheValTyr 85 : ATTCGTATAC : 75 vulgar: gi|350422500|ref|XP_003493182.1| 336 382 . LHQN01029187.1 212 74 - 115 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 75 212 115 - . gene_id 1 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 75 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 75 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 75 212 115 - . alignment_id 1 ; Query gi|350422500|ref|XP_003493182.1| ; Align 213 337 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422517|ref|XP_003493188.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 336 -> 380 Target range: 112 -> 244 337 : GlnCysGlnLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAsnLysValI : 358 :!! ! |||||||||! ! !||||||||||||.!.|||||| ||| !!.!.|||..! GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrA 113 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTG : 176 359 : leLeuAspLeuIleLeuIleIleAlaArgSerSerThrValValHisLeuThrAlaGlyLysPh : 379 !|||! !|||:!!:!!||||||:!!|||||||||! !|||:!! ! :!!|||||||||||||| laLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPh 177 : CTCTCGGTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATT : 239 380 : eIle : 380 |:!! eVal 240 : CGTA : 244 vulgar: gi|350422517|ref|XP_003493188.1| 336 380 . LHQN01048470.1 112 244 + 125 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 113 244 125 + . gene_id 1 ; sequence gi|350422517|ref|XP_003493188.1| ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 113 244 . + . LHQN01048470.1 exonerate:protein2genome:local exon 113 244 . + . insertions 0 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 113 244 125 + . alignment_id 1 ; Query gi|350422517|ref|XP_003493188.1| ; Align 113 337 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412835|ref|XP_003489780.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 339 -> 380 Target range: 121 -> 244 340 : LysIleGlyAspMetValTyrMetAlaAspTrpHisHisLeuProAspGlnAspIleIleAsnL : 361 |||:!!|||! ! |||||||||.!!!!:|||:!!!..||| !!.!.:!! ! !:!!..!| LysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGlyL 122 : AAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGGTT : 185 362 : euIleMetIleIleSerArgSerSerMetGluValLysIleThrAlaGlyLysIleIle : 380 ||:!!||||||||||||||||||||||||! !:!!||||||||||||||||||.!!:!! euValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheVal 186 : TGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTA : 244 vulgar: gi|350412835|ref|XP_003489780.1| 339 380 . LHQN01048470.1 121 244 + 122 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 122 244 122 + . gene_id 1 ; sequence gi|350412835|ref|XP_003489780.1| ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 122 244 . + . LHQN01048470.1 exonerate:protein2genome:local exon 122 244 . + . insertions 0 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 122 244 122 + . alignment_id 1 ; Query gi|350412835|ref|XP_003489780.1| ; Align 122 340 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422508|ref|XP_003493185.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 337 -> 391 Target range: 112 -> 280 338 : GlnCysGlnLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAspLysIleI : 359 :!! ! |||||||||! ! !||||||||||||.!.|||||| ||| !!.!.|||! ! GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrA 113 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTG : 176 360 : leLeuAspLeuIleLeuIleIleAlaArgSerSerMetValValHisIleThrAlaGlyLysLe : 380 !|||! !|||:!!:!!||||||:!!|||||||||||||||:!! ! |||||||||||||||!! laLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPh 177 : CTCTCGGTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATT : 239 381 : uValHis<-><->MetSerValTyrThrPheGlyAspVal : 391 !|||:!! !|||||| ||||||||||||||| eValTyr***ThrSerSerValAlaThrPheGlyAspVal 240 : CGTATACTGAACATCGTCTGTCGCAACATTTGGCGATGTG : 280 vulgar: gi|350422508|ref|XP_003493185.1| 337 391 . LHQN01048470.1 112 280 + 135 M 45 135 G 0 6 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 113 280 135 + . gene_id 1 ; sequence gi|350422508|ref|XP_003493185.1| ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 113 280 . + . LHQN01048470.1 exonerate:protein2genome:local exon 113 280 . + . insertions 6 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 113 280 135 + . alignment_id 1 ; Query gi|350422508|ref|XP_003493185.1| ; Align 113 338 135 ; Align 254 383 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350412806|ref|XP_003489770.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 335 -> 389 Target range: 112 -> 280 336 : GlnCysGlnLysValGlyAspMetValTyrMetThrAsnTrpTyrGlnLeuProAspLysAsnI : 357 :!! ! |||||||||! ! ||||||||||||.!.||||||!:!||| !!.!.|||!.! GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrA 113 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTG : 176 358 : leLeuSerIleIleMetIleIleSerArgSerHisMetGluValLysIleThrAlaGlyLysIl : 378 !|||.!!:!::!!|||||||||||||||||| !|||! !:!!||||||||||||||||||.! laLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPh 177 : CTCTCGGTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATT : 239 379 : eIle<-><->ThrMetSerValTyrThrPheGlyAsnIle : 389 !:!! ||| !|||||| |||||||||:!!:!: eValTyr***ThrSerSerValAlaThrPheGlyAspVal 240 : CGTATACTGAACATCGTCTGTCGCAACATTTGGCGATGTG : 280 vulgar: gi|350412806|ref|XP_003489770.1| 335 389 . LHQN01048470.1 112 280 + 137 M 44 132 G 0 6 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 113 280 137 + . gene_id 1 ; sequence gi|350412806|ref|XP_003489770.1| ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 113 280 . + . LHQN01048470.1 exonerate:protein2genome:local exon 113 280 . + . insertions 6 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 113 280 137 + . alignment_id 1 ; Query gi|350412806|ref|XP_003489770.1| ; Align 113 336 132 ; Align 251 380 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422503|ref|XP_003493183.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 339 -> 381 Target range: 121 -> 247 340 : LysValGlyAspValValTyrMetAlaAsnTrpTyrTyrLeuThrGluLysArgIleLeuGluL : 361 |||||||||! !|||||||||.!!.!.|||||| |||:!!:!!|||! ! !|||! | LysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGlyL 122 : AAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGGTT : 185 362 : euIleLeuIleIleMetArgSerSerValValValGluIleThrAlaGlyLysIleIleHis : 381 ||:!!:!!|||||| |||||||||:!!|||:!!:!!|||||||||||||||.!!:!!:!! euValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheValTyr 186 : TGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTATAC : 247 vulgar: gi|350422503|ref|XP_003493183.1| 339 381 . LHQN01048470.1 121 247 + 123 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 122 247 123 + . gene_id 1 ; sequence gi|350422503|ref|XP_003493183.1| ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 122 247 . + . LHQN01048470.1 exonerate:protein2genome:local exon 122 247 . + . insertions 0 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 122 247 123 + . alignment_id 1 ; Query gi|350422503|ref|XP_003493183.1| ; Align 122 340 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422520|ref|XP_003493189.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 176 Query range: 338 -> 384 Target range: 106 -> 244 339 : IleGluGlnGlyGluArgValGlyLysLysValTyrMetThrGluTrpTyrArgLeuProHisL : 360 |||! !:!! ! !:!|||||| !|||||||||||||||||||||||||||||| !!!!.| IleGlyGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnL 107 : ATCGGAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAA : 170 361 : ysThrAlaLeuGlyLeuValLeuValIleSerArgSerSerMetValValLysIleThrAlaGl : 381 ||||||||||||||||||||:!!:!!|||||||||||||||||||||:!!|||||||||||||| ysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGl 171 : AAACTGCTCTCGGTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGG : 233 382 : yLysPheIle : 384 |||||||:!! yLysPheVal 234 : AAAATTCGTA : 244 vulgar: gi|350422520|ref|XP_003493189.1| 338 384 . LHQN01048470.1 106 244 + 176 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 107 244 176 + . gene_id 1 ; sequence gi|350422520|ref|XP_003493189.1| ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 107 244 . + . LHQN01048470.1 exonerate:protein2genome:local exon 107 244 . + . insertions 0 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 107 244 176 + . alignment_id 1 ; Query gi|350422520|ref|XP_003493189.1| ; Align 107 339 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422500|ref|XP_003493182.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 337 -> 391 Target range: 112 -> 280 338 : GlnSerLysLysPheGlyAspValValTyrMetThrLysTrpTyrTyrLeuProAsnLysAspI : 359 :!!!!!! ||| !!|||! !||||||||||||:!!|||||| ||| !!.!.||| ! GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrA 113 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTG : 176 360 : lePheAspLeuIleLeuIleIleThrArgSerAsnSerAlaIleLysIleThrAlaGlyLysIl : 380 !.!!! !|||:!!:!!||||||:!!||||||!:!! !!.!|||||||||||||||||||||.! laLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPh 177 : CTCTCGGTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATT : 239 381 : eThrHis<-><->MetSerIleAsnThrPheGlyAspVal : 391 !..!:!! !|||:!! ||||||||||||||| eValTyr***ThrSerSerValAlaThrPheGlyAspVal 240 : CGTATACTGAACATCGTCTGTCGCAACATTTGGCGATGTG : 280 vulgar: gi|350422500|ref|XP_003493182.1| 337 391 . LHQN01048470.1 112 280 + 119 M 45 135 G 0 6 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 113 280 119 + . gene_id 1 ; sequence gi|350422500|ref|XP_003493182.1| ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 113 280 . + . LHQN01048470.1 exonerate:protein2genome:local exon 113 280 . + . insertions 6 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 113 280 119 + . alignment_id 1 ; Query gi|350422500|ref|XP_003493182.1| ; Align 113 338 135 ; Align 254 383 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350406010|ref|XP_003487626.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 149 Query range: 252 -> 310 Target range: 607 -> 433 253 : SerLeuAspIleProAsnMetIleTyrHisSerAspTrpThrAsnLeuSerAsnAspAlaLysL : 274 ||||||!!:||| !:!!! :!!!:!.!.|||:!!|||||| ||||||.!...!.!!|||| SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSerThrLysL 607 : AGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAGCACCAAAA : 544 275 : ysMetLeuMetValIleMetAlaArgSerLeuThrProValGluIleThrSerAlaTyrIleLe : 295 ||! |||:!!..!|||||| !|||||||||! !|||:!!|||.!!|||.!!|||!:!:!!!! ysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheThrGlyAlaPheValPh 543 : AGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTT : 481 296 : uProMetAsnLeuGluSerPheLysGlyLeuIleLysThrThrTyr : 310 !|||:!:||||||||||||||||||.!!:!! ! ||| eProValAsnLeuGluSerPheLysSerValCysIleLysIleTyr 480 : TCCCGTAAATTTGGAGTCTTTTAAAAGTGTTTGTatcaaaatatat : 434 vulgar: gi|350406010|ref|XP_003487626.1| 252 310 . LHQN01050085.1 607 433 - 149 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 434 607 149 - . gene_id 1 ; sequence gi|350406010|ref|XP_003487626.1| ; gene_orientation . LHQN01050085.1 exonerate:protein2genome:local cds 434 607 . - . LHQN01050085.1 exonerate:protein2genome:local exon 434 607 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 434 607 149 - . alignment_id 1 ; Query gi|350406010|ref|XP_003487626.1| ; Align 608 253 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350406010|ref|XP_003487626.1| PREDICTED: odorant receptor 46a, isoform A-like [Bombus impatiens] Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 140 -> 186 Target range: 1345 -> 1207 141 : AspThrLeuPheAlaGlyLeuLeuLeuGlnIleCysCysGlnPheGluIleLeuValAsnAr : 161 |||!.!||||||::!|||||||||:!!!!.|||! !|||||||||||||||||| !:!!|| AspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisAr 1345 : GACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCG : 1285 162 : gLeuHisAsnIleGlyGlyAspGluIleLeuSerLeuLysHisCysValArgHisHisAsnA : 182 |||| ! !:!||| ! !|||..! ! !||| !|||!!.|||!.! !|||||| !! gLeuLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrA 1284 : TCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATC : 1222 183 : laIleTyrArgPhe : 186 !||||||!:!||| rgIleTyrLysPhe 1221 : GCATATACAAGTTT : 1208 vulgar: gi|350406010|ref|XP_003487626.1| 140 186 . LHQN01050085.1 1345 1207 - 124 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 1208 1345 124 - . gene_id 2 ; sequence gi|350406010|ref|XP_003487626.1| ; gene_orientation . LHQN01050085.1 exonerate:protein2genome:local cds 1208 1345 . - . LHQN01050085.1 exonerate:protein2genome:local exon 1208 1345 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 1208 1345 124 - . alignment_id 2 ; Query gi|350406010|ref|XP_003487626.1| ; Align 1346 141 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350415148|ref|XP_003490548.1| PREDICTED: odorant receptor 47a-like [Bombus impatiens] Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 327 -> 388 Target range: 833 -> 1185 328 : ValGlyAspSerValTyrPheCysSerTrpTyrAspIleProThrSerIleAlaLysAsnIl : 348 :!!|||:!!!!!!.!||| ! ! !|||||||||:!!! !:!!!!! !::!:!! !:! IleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSerGlnLeuLe 834 : ATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAGCCAACTTCT : 894 349 : eIleTyrValIleMetArgSerGlnAspProValSerLeuAsnAlaGlyLysPhePheThrV : 369 !||| !||||||:!!||||||||| ! ! !!!!!!..... ||||||||| :::: uIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysPheSerSerL 895 : AATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaattttcaagtc : 957 370 : alAsnMetGluThrTyrMetSer >>>> Target Intron 1 >>>> IleLeuLysT : 380 :!::!:!!|||!:!!:!! !:!! 169 bp |||:!!|||. euSerLeuGluSerPheThrAla++ ++IleMetLysV 958 : tCTCCTTGGAAAGCTTTACGGCCgt.........................agATCATGAAAG : 1159 381 : hrSerMetSerTyrLeuSerValLeu : 388 .!||| ||||||:!!||||||||| alSerAlaSerTyrIleSerValLeu 1160 : TCTCAGCATCATATATATCAGTACTT : 1185 vulgar: gi|350415148|ref|XP_003490548.1| 327 388 . LHQN01050112.1 833 1185 + 108 M 49 147 5 0 2 I 0 165 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 834 1185 108 + . gene_id 1 ; sequence gi|350415148|ref|XP_003490548.1| ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 834 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 834 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1185 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1185 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 834 1185 108 + . alignment_id 1 ; Query gi|350415148|ref|XP_003490548.1| ; Align 834 328 147 ; Align 1150 377 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928873|ref|XP_012248903.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414588.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold11, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 257 -> 332 Target range: 776393 -> 776679 258 : PheLeuValGlyGlnGlnPheHisLeuLeuIleIleThrLeuProGlyGlnValIleT : 277 |||:!!:!! !||| ! ! |||:!!||| !:!!||||||||||||||| !!:!:! PheIleMetIleGlnLeuValHisValLeuTyrLeuThrLeuProGlyGlnPheValI 776394 : TTTATCATGATTCAATTGGTACACGTACTTTATCTAACTCTTCCAGGACAATTCGTGA : 776451 278 : hrAspHisSerPheGluLeuThrAsnAsp{Il} >>>> Target Intron 1 >> : 287 !||| !:! |||:!!:!!.!....{||} 61 bp leAspAlaAsnGluGluIleSerGluSer{Il}++ 776452 : TCGACGCGAACGAGGAAATCTCCGAATCG{AT}gt....................... : 776485 288 : >> {e}TyrArgSerMetTrpTyrAsnMetProIleAsnValGlnArgValLeuHis : 304 {|}|||!!!:!!:!!|||||||||! !! !....!||| !:!!!!! ++{e}TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheVal 776486 : ..ag{A}TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTA : 776593 305 : MetMetGlnMetArgSerSerLysProCysLysLeuThrAlaGlyGlyIleTyrGlnM : 324 :!: ! !! !.!!!! !... !! !:!!:!!||||||||||||:!! ! !| LeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrM 776594 : TTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAA : 776653 325 : etAsnIleGluAsnPheGlyIleVal : 332 |||||:!::!!!:!|||..! ||| etAsnLeuGlnSerPheSerGluVal 776654 : TGAACTTGCAAAGTTTCTCAGAGGTA : 776679 vulgar: gi|815928873|ref|XP_012248903.1| 257 332 . KQ414588.1 776393 776679 + 120 M 29 87 S 0 2 5 0 2 I 0 57 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414588.1 exonerate:protein2genome:local gene 776394 776679 120 + . gene_id 1 ; sequence gi|815928873|ref|XP_012248903.1| ; gene_orientation + KQ414588.1 exonerate:protein2genome:local cds 776394 776482 . + . KQ414588.1 exonerate:protein2genome:local exon 776394 776482 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local splice5 776483 776484 . + . intron_id 1 ; splice_site "GT" KQ414588.1 exonerate:protein2genome:local intron 776483 776543 . + . intron_id 1 KQ414588.1 exonerate:protein2genome:local splice3 776542 776543 . + . intron_id 0 ; splice_site "AG" KQ414588.1 exonerate:protein2genome:local cds 776544 776679 . + . KQ414588.1 exonerate:protein2genome:local exon 776544 776679 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local similarity 776394 776679 120 + . alignment_id 1 ; Query gi|815928873|ref|XP_012248903.1| ; Align 776394 258 87 ; Align 776545 288 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 171 -> 224 Target range: 204059 -> 204218 172 : LeuSerMetThrProTyrPheGluLeuMetPheMetLeuGlnValValCysSerTyrH : 191 :::||| |||||||||||||||:!!||||||:!:||||||:!!!.! !! ! IleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAlaThrLeuValL 204060 : ataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGT : 204117 192 : isValGlyValCysTyrHisCysPheAspAsnIleLeuCysIleLeuAsnLeuHisAl : 210 :!!!.!:!!|||||| ! !! !!||||||.!!!!! ! ||||||! !|||||| euMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeuIleLeuHisIl 204118 : TAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATAT : 204174 211 : aAlaAlaGlnPheArgIleLeuGlnHisArgLeuThrAsnMet : 224 !..!!.!|||!!...!! !|||!:: ||||||.!!|||!!: eCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIle 204175 : TTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATA : 204218 vulgar: gi|350397203|ref|XP_003484804.1| 171 224 . KQ414617.1 204059 204218 + 109 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204060 204218 109 + . gene_id 1 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204060 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 204060 204218 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204060 204218 109 + . alignment_id 1 ; Query gi|350397203|ref|XP_003484804.1| ; Align 204060 172 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 178 -> 240 Target range: 204023 -> 204209 179 : ArgValLeuProPheArgMetTrpLeuAspLeuProLeuThrValThrProTyrTyrG : 198 !:!:!!!!!||| ! ! ::: ::::!!! !|||||||||!:!| LysLeuPheProValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheG 204024 : AAGCTTTTTCCGGTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTG : 204081 199 : luIleLeuPheValLeuGlnValLeuSerLeuTyrHisValGlyIleCysTyrIleCy : 217 |||||:!!|||:!!||||||:!! !!!!||| :!!!.!:!!||||||||| ! luIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGl 204082 : AGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGG : 204138 218 : sPheAspAsnLeuLeuCysLeuIleAsnLeuHisAlaAlaThrGlnPheArgIleLeu : 236 ! !!||||||!!!!!! ! :!!:!:! !|||||| !..! !|||!!...!! !||| yValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeu 204139 : TGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTT : 204195 237 : GlnTyrArgLeu : 240 !:: |||||| ArgThrArgLeu 204196 : CGTACACGACTT : 204209 vulgar: gi|350397292|ref|XP_003484830.1| 178 240 . KQ414617.1 204023 204209 + 105 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204024 204209 105 + . gene_id 1 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204024 204209 . + . KQ414617.1 exonerate:protein2genome:local exon 204024 204209 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204024 204209 105 + . alignment_id 1 ; Query gi|350397292|ref|XP_003484830.1| ; Align 204024 179 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396456|ref|XP_003484556.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 320 -> 383 Target range: 204675 -> 204934 321 : CysTyrIleGlyGlnLeuLeuIleAsnGlu >>>> Target Intron 1 >>>> : 331 ||| !! !||||||:!!|||:!!|||:!! 70 bp CysIleThrGlyGlnIleLeuValAsnGln++ + 204676 : TGTATCACAGGACAAATTTTAGTAAATCAGgt.........................a : 204774 332 : SerGluAsnValArgLeuMetSerIleThrLeuAsnTrpTyrArgPheProMetLys : 349 ||||||.!.||| !:!! :!! ! !! !.!.|||! !.!!!. ! !!!. +SerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsn 204775 : gTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAAC : 204830 350 : LysAlaArgAsnLeuIleLeuIleIleIleMetSerAsnTyrProIleLysLeuThrA : 369 ||||||!:!!:!||||||||||||!!: !! !:!!.!. |||:!! ||||||| LysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuThrA 204831 : AAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCG : 204890 370 : laGlyLysIleValAspIleSerLeuAlaThrPheThrAspIle : 383 ||||||||::: :::!!!:!! !|||||| !:!!:!! laGlyLysLeuPheProMetThrMetLeuThrPheCysAsnVal 204891 : caggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: gi|350396456|ref|XP_003484556.1| 320 383 . KQ414617.1 204675 204934 + 112 M 10 30 5 0 2 I 0 66 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204676 204934 112 + . gene_id 1 ; sequence gi|350396456|ref|XP_003484556.1| ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 204676 204705 . + . KQ414617.1 exonerate:protein2genome:local exon 204676 204705 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 204706 204707 . + . intron_id 1 ; splice_site "GT" KQ414617.1 exonerate:protein2genome:local intron 204706 204775 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 204774 204775 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 204776 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204776 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204676 204934 112 + . alignment_id 1 ; Query gi|350396456|ref|XP_003484556.1| ; Align 204676 321 30 ; Align 204776 331 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350405070|ref|XP_003487314.1| PREDICTED: odorant receptor 85b-like [Bombus impatiens] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 647 Query range: 0 -> 234 Target range: 1053857 -> 1052542 1 : MetThrLysGlnIleThrProGluLysValIleHisIleThrTrpLeuSerValVa : 19 ||| !||||||:!:|||||||||||||||||| !!|||! !|||!!!||||||!. MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : lIleThrLeuCysTrpProLeuProIleAsnSerAspArgAsnLysIlePheCysP : 38 !:!:.!!:!!|||||||||||| !!! !::!:!!..!!:! !:!!:!! ...| aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 39 : heLysIleLeuGlnIleCysSerIleIleSerAlaCysLeuLeuPheLeuProMet : 56 ||||||||||||||||||||||| ||||||||| !:!!|||.!!||||||:!! heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 57 : LeuTyrPheCysTyrValHisPheAspAspLeuIleAlaThrSerSerCysValCy : 75 ||||||! !|||:!!||||||||||||:!!|||!.! !|||..! !!:!!|| LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 76 : sLeuThrIleGlyValSerGlnAsnIlePheGlnThrIleValCysCysValLysH : 94 ||||:!!!!:||||||! !|||! |||.!.||||||:!!:!!|||! !..!!!.: sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCysPheThrAsnT 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGTTTCACCAACT : 1053578 95 : isValSerLeuGln >>>> Target Intron 1 >>>> ArgIleValGluG : 103 !!! ! !|||||| 613 bp ||||||:!! !| yrAspLeuLeuGln++ ++ArgIleIleThrG 1053577 : ACGACCTTCTGCAGgt.........................agCGAATAATTACAG : 1052938 104 : luMetIleValCysIleLysGluAlaGluGlnTyrGluArgGluIlePheTyrLys : 121 ||||||||..!! !:!!|||||||||:!!|||!:!||||||||||||.!!:!!!!. luMetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLeuHisAsn 1052937 : AAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCACAAC : 1052884 122 : TyrIleLysLysCysTyrValPheCysGlyCysSerIleAlaCysThrTyrValTh : 140 ||||||:!!|||||| ! :!!|||! !||| !!|||:!! !!! ||||||:!! TyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrTyrLeuCy 1052883 : TATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACATACCTCTG : 1052827 141 : rAlaValGlyPheSerLeuArgProAlaIleLeuProValProPheProPheAspV : 159 !|||..! !!||| !||| !!|||!.!:!!|||||| !||||||||| !..!! sAlaThrCysPheValLeuGlyProValValLeuProAsnProPheProSerSerA 1052826 : TGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGCAGTG : 1052770 160 : alGluTyrProPheProValAsnTyrThrSerValTyrIleIleIleTyrMetGln : 177 .!||||||||||||! !|||||| !||| !!:!! !! !|||:!!|||:!!!!. laGluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyrLeuHis 1052769 : CAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTACCTGCAC : 1052716 178 : HisValCysValCysPheGlnSerAlaAlaGlnIleCysIleSerSerPheGlyGl : 196 !!. !! !:!! !!||||||! !::!|||!!.||||||:!!|||! !||||||!. GlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePheGlyAl 1052715 : CAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTTCGGAGC : 1052659 197 : yLeuLeuLeuTrpPheThrAlaAlaArgPheGluCysLeuAlaValAsnLeuGluA : 215 !||||||||||||.!!|||||||||||||||.!.||||||.!!:!!.!.:!!:!!! aLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluValGlnG 1052658 : TCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTTCAAC : 1052602 216 : rgSerThrAspThrAspThrLeuIleAspCysValLysLysGlnLeuHisLeuArg : 233 :!|||:!!..!! ! !!! !|||||| !||||||||||||||||||! |||||| lnSerSerSerIleHisMetLeuIleIleCysValLysLysGlnLeuLeuLeuArg 1052601 : AAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCTACTACTGAGG : 1052548 234 : Arg : 234 ||| Arg 1052547 : AGG : 1052543 vulgar: gi|350405070|ref|XP_003487314.1| 0 234 . KQ414618.1 1053857 1052542 - 647 M 98 294 5 0 2 I 0 609 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1052543 1053857 647 - . gene_id 1 ; sequence gi|350405070|ref|XP_003487314.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1053564 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053564 1053857 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1053562 1053563 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052951 1053563 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052951 1052952 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052543 1052950 . - . KQ414618.1 exonerate:protein2genome:local exon 1052543 1052950 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1052543 1053857 647 - . alignment_id 1 ; Query gi|350405070|ref|XP_003487314.1| ; Align 1053858 1 294 ; Align 1052951 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350405070|ref|XP_003487314.1| PREDICTED: odorant receptor 85b-like [Bombus impatiens] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 417 Query range: 0 -> 234 Target range: 1030017 -> 1028765 1 : MetThrLysGlnIleThrProGluLysValIleHisIleThrTrpLeuSerValVa : 19 ||| !||| ! !:!||||||!:!!.!||| !:!!..! :!!! !..!!. MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1030017 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1029963 20 : lIleThrLeuCysTrpProLeuProIleAsnSerAspArgAsnLysIlePheCysP : 38 !.!!|||! !||||||||||||||| !..:!! !!:!::! !:!:.!! | aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1029962 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1029906 39 : heLysIleLeuGlnIleCysSerIleIleSerAlaCysLeuLeuPheLeuProMet : 56 |||||||||||::! !! ! !:!!:!!!:!|||! :!!||||||||||||:!! heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1029905 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1029852 57 : LeuTyrPheCysTyrValHisPheAspAspLeuIleAlaThrSerSerCysValCy : 75 |||||| ! :!!|||||| :!!||| ! !..!:!!!.!..!!.!|| LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1029851 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1029795 76 : sLeuThrIleGlyValSerGlnAsnIlePheGlnThrIleValCysCysValLysH : 94 |||||||:!!!.!::: ||| ...|||||||||.!!|||||| !! !:!!: sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1029794 : CCTGACGCTTGCCctcgtgcaaatatttttccagacTTTCGTTTGCATCGGCCAAT : 1029738 95 : isValSerLeuGln >>>> Target Intron 1 >>>> ArgIleValGluG : 103 !!! ! !!!!||| 550 bp !:!:!!:!!|||| yrAspHisPheGln++ ++LysLeuIleGluG 1029737 : ACGATCATTTTCAGgt.........................agAAACTAATCGAAG : 1029161 104 : luMetIleValCysIleLysGluAlaGluGlnTyrGluArgGluIlePheTyrLys : 121 |||||! :!!||| !:!! !|||:!!! !|||||||||!!::!!||| ! ::! luMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheGlnArg 1029160 : AAATGAAGATTTGCTGTGAAACAGCGAAACCATACGAAAGAGACGTCTTTCAACGA : 1029107 122 : TyrIleLysLysCysTyrValPheCysGlyCysSerIleAlaCysThrTyrValTh : 140 |||:!! ! |||! !! !:!!|||! !! ! !!! :!!!! !|||:!!|| TyrValAspLysTyrSerLeuPheTyrValThrCysSerSerTrpPheTyrLeuTh 1029106 : TACGTCGATAAATACTCTTTATTTTACGTAACATGTTCGTCGTGGTTTTACTTAAC : 1029050 141 : rAlaValGlyPheSerLeuArgProAlaIleLeuProValProPheProPheAspV : 159 ||||||| !.!. !||| !! ! !|||:!! !!! !||||||||| !:!!! rAlaValIleMetValLeuGlySerArgIleIleSerAspProPheProThrAsnA 1029049 : AGCAGTTATTATGGTTCTGGGAAGTCGGATTATATCTGATCCTTTTCCAACCAACG : 1028993 160 : alGluTyrProPheProValAsnTyrThrSerValTyrIleIleIleTyrMetGln : 177 .!! !||||||||||||||||||!:! ! !!:!! ! !||||||!:!|||!!. laValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHis 1028992 : CCGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGTATCATTTTTATGCAC : 1028939 178 : HisValCysValCysPheGlnSerAlaAlaGlnIleCysIleSerSerPheGlyGl : 196 !!. !! !||| !!.!.|||!!!||||||!!.! ! !!!!:!:! !.!. !!. GlnSerPheValGlyIleGlnCysAlaAlaHisThrSerMetAsnValLeuThrAl 1028938 : CAATCGTTCGTTGGCATACAGTGTGCTGCACACACTAGTATGAATGTGCTAACTGC : 1028882 197 : yLeuLeuLeuTrpPheThrAlaAlaArgPheGluCysLeuAlaValAsnLeuGluA : 215 !||||||||| |||.!!||||||||||||||| ||| !:!!.!.|||..!! aLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuMetMetGluLeuArgA 1028881 : ATTGTTATTACTATTTGCTGCAGCTCGTTTCGAGATACTGATGATGGAGCTGAGGA : 1028825 216 : rgSerThrAspThrAspThrLeuIleAspCysValLysLysGlnLeuHisLeuArg : 233 .! !!:!|||! !!!:||||||||| ! |||:!!|||||| ! ! ! !:!!||| snValSerAspIleGluThrLeuIleLysCysMetLysLysTyrSerIleValArg 1028824 : ATGTCAGTGACATTGAAACACTGATTAAATGTATGAAAAAGTATTCGATCGTACGG : 1028771 234 : Arg : 234 ||| Arg 1028770 : AGG : 1028766 vulgar: gi|350405070|ref|XP_003487314.1| 0 234 . KQ414618.1 1030017 1028765 - 417 M 98 294 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028766 1030017 417 - . gene_id 2 ; sequence gi|350405070|ref|XP_003487314.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1029724 1030017 . - . KQ414618.1 exonerate:protein2genome:local exon 1029724 1030017 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1029722 1029723 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1029174 1029723 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1029174 1029175 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028766 1029173 . - . KQ414618.1 exonerate:protein2genome:local exon 1028766 1029173 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028766 1030017 417 - . alignment_id 2 ; Query gi|350405070|ref|XP_003487314.1| ; Align 1030018 1 294 ; Align 1029174 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350405070|ref|XP_003487314.1| PREDICTED: odorant receptor 85b-like [Bombus impatiens] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 246 Query range: 95 -> 234 Target range: 1038349 -> 1037932 96 : SerLeuGlnArgIleValGluGluMetIleValCysIleLysGluAlaGluGlnTy : 114 !!!||||||!:!:!!:!!|||||||||! :!!||| !:!! !|||:!!! !|| ThrLeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTy 1038349 : ACGTTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATA : 1038295 115 : rGluArgGluIlePheTyrLysTyrIleLysLysCysTyrValPheCysGlyCysS : 133 |||||||!!::!!||| ! ::!|||:!!!!.||| :::||| rGluArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrC 1038294 : CGAAAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacat : 1038238 134 : erIleAlaCysThrTyrValThrAlaValGlyPheSerLeuArgProAlaIleLeu : 151 !! :!!!! !|||:!!||||||:!! !.!. !||| !! ! !:!!:!! ysSerSerTrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIle 1038237 : GTTCGTCATGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATA : 1038184 152 : ProValProPheProPheAspValGluTyrProPheProValAsnTyrThrSerVa : 170 !!! !||||||||| !:!!!.!! !||||||||||||||||||!:! ! !!:! SerAspProPheProThrAsnAlaValTyrProPheProValAsnPheGluProLe 1038183 : TCCGATCCTTTTCCAACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTT : 1038127 171 : lTyrIleIleIleTyrMetGlnHisValCysValCysPheGlnSerAlaAlaGlnI : 189 ! ! !||||||!:!|||!!.!!. !! !||| !!.!.|||!!!||||||!!. uArgSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisA 1038126 : GAGAAGCATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACG : 1038070 190 : leCysIleSerSerPheGlyGlyLeuLeuLeuTrpPheThrAlaAlaArgPheGlu : 207 ! !!!!:!:! !.!!..!!.!||||||||| ||||||.!!|||||||||||| laSerMetAsnValLeuSerAlaLeuLeuLeuLeuPheThrThrAlaArgPheGlu 1038069 : CTAGTATGAATGTGCTTTCTGCACTGTTATTGCTATTCACTACAGCtcgtttcgaa : 1038016 208 : CysLeuAlaValAsnLeuGluArgSerThrAspThrAspThrLeuIleAspCysVa : 226 ||| !..!.!.|||..!!.! !!.!|||! !!!:||||||||| ! !!:! IleLeuMetThrGluLeuArgAsnValAsnAspIleGluThrLeuIleLysSerMe 1038015 : atattgaTGACGGAGTTGAGGAATGTCAATGATATCGAAACACTGATTAAGAGTAT : 1037959 227 : lLysLysGlnLeuHisLeuArgArg : 234 !|||||| ! ! ! !:!!|||||| tLysLysTyrSerThrValArgArg 1037958 : GAAAAAGTATTCGACTGTGCGGAGG : 1037933 vulgar: gi|350405070|ref|XP_003487314.1| 95 234 . KQ414618.1 1038349 1037932 - 246 M 139 417 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037933 1038349 246 - . gene_id 3 ; sequence gi|350405070|ref|XP_003487314.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1037933 1038349 . - . KQ414618.1 exonerate:protein2genome:local exon 1037933 1038349 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037933 1038349 246 - . alignment_id 3 ; Query gi|350405070|ref|XP_003487314.1| ; Align 1038350 96 417 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350405070|ref|XP_003487314.1| PREDICTED: odorant receptor 85b-like [Bombus impatiens] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 225 Query range: 301 -> 369 Target range: 1052134 -> 1051865 302 : SerMetGlyIleProGlnSerAlaTyrAsnSerThrTrpTyrAspArgArgLeuGl : 320 ||| !:!! !!||||||!.!|||:!!! !|||||||||! !:!! !||||| SerAlaLysValSerGlnSerValTyrAspLeuThrTrpTyrGlyGlnThrLeuGl 1052134 : AGTGCAAAGGTTTCACAAAGTGTGTATGATTTAACGTGGTACGGACAAACATtgga : 1052080 321 : uMetGlnLysAsnLeuLeuAsnMetLeuThrTyrGlnLysProLeuValLeuSerI : 339 |||||||||||||:::||| :::|||..!:!!|||:!!|||:!!:!!||||||: uMetGlnLysAsnValLeuTyrIleLeuValHisGlnGluProValIleLeuSerV 1052079 : aatgcagaaaaatgtattatacatattgGTACACCAAGAACCGGTAATTCTGTCAG : 1052023 340 : leArgCysIleValProGluLeuSerLeuArgTyrTyrCysSer >>>> Targe : 354 !!!!!||||||||||||||||||||||||||||||||||||||| alSerCysIleValProGluLeuSerLeuArgTyrTyrCysSer++ 1052022 : TTAGTTGCATCGTGCCGGAGCTTTCTCTTCGTTATTATTGCTCGgt.......... : 1051976 355 : t Intron 1 >>>> TyrLeuSerAsnAlaPheSerIlePheThrThrLeuArg : 366 65 bp |||||||||||||||||||||:!!||||||.!!|||||| ++TyrLeuSerAsnAlaPheSerValPheThrAlaLeuArg 1051975 : ...............agTACCTGTCAAATGCGTTCTCGGTTTTCACCGCTTTGCGC : 1051877 367 : ValMetIle : 369 |||:!!:!: ValValLeu 1051876 : GTCGTGCTG : 1051866 vulgar: gi|350405070|ref|XP_003487314.1| 301 369 . KQ414618.1 1052134 1051865 - 225 M 52 156 5 0 2 I 0 61 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1051866 1052134 225 - . gene_id 4 ; sequence gi|350405070|ref|XP_003487314.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1051979 1052134 . - . KQ414618.1 exonerate:protein2genome:local exon 1051979 1052134 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1051977 1051978 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1051914 1051978 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1051914 1051915 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051866 1051913 . - . KQ414618.1 exonerate:protein2genome:local exon 1051866 1051913 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1051866 1052134 225 - . alignment_id 4 ; Query gi|350405070|ref|XP_003487314.1| ; Align 1052135 302 156 ; Align 1051914 354 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350405070|ref|XP_003487314.1| PREDICTED: odorant receptor 85b-like [Bombus impatiens] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 180 Query range: 0 -> 90 Target range: 1039184 -> 1038914 1 : MetThrLysGlnIleThrProGluLysValIleHisIleThrTrpLeuSerValVa : 19 ||| !||| ! !:!||||||!:!!.!||| !:!!..! :!!! !..!!. MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1039184 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1039130 20 : lIleThrLeuCysTrpProLeuProIleAsnSerAspArgAsnLysIlePheCysP : 38 !.!!|||! !||||||||||||||| !..:!! !!:!::! !:!:.!! | aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1039129 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1039073 39 : heLysIleLeuGlnIleCysSerIleIleSerAlaCysLeuLeuPheLeuProMet : 56 |||||||||||::! !! ! !:!!:!!!:!|||! :!!||||||||||||:!! heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1039072 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1039019 57 : LeuTyrPheCysTyrValHisPheAspAspLeuIleAlaThrSerSerCysValCy : 75 |||||| ! :!!|||||| :!!||| ! !..!:!!!.!..!!.!|| LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1039018 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1038962 76 : sLeuThrIleGlyValSerGlnAsnIlePheGlnThrIleValCys : 90 |||||||:!!!.!::: ||| ...|||||||||...|||||| sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCys 1038961 : CCTGACGCTTGCTctcgtgcaaatatttttccaaactttcgttTGC : 1038915 vulgar: gi|350405070|ref|XP_003487314.1| 0 90 . KQ414618.1 1039184 1038914 - 180 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1038915 1039184 180 - . gene_id 5 ; sequence gi|350405070|ref|XP_003487314.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1038915 1039184 . - . KQ414618.1 exonerate:protein2genome:local exon 1038915 1039184 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1038915 1039184 180 - . alignment_id 5 ; Query gi|350405070|ref|XP_003487314.1| ; Align 1039185 1 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350405970|ref|XP_003487614.1| PREDICTED: odorant receptor 24a-like [Bombus impatiens] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1101 Query range: 0 -> 373 Target range: 1053857 -> 1051853 1 : MetLeuArgGlnValThrProGluLysValIleHisIleValTrpLeuSerAlaAl : 19 ||||||!:!|||:!!|||||||||||||||||| !!|||:!!|||!!!|||!.!|| MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : aLeuSerPheCysTrpProLeuProIleSerSerSerArgThrArgValLeuGlyP : 38 ||||:!! !!|||||||||||| !!! !|||:!!|||!:!.!!!:!|||:::...| aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 39 : heArgIleLeuGlnIleSerAlaIleIleSerAlaCysMetLeuLeuLeuProMet : 56 ||:::|||||||||||| ::! ||||||||| !!!:||||||||||||:!! heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 57 : LeuTyrSerIleTyrLeuHisProAspAspLeuValValValPheLysCysMetCy : 75 |||||||||! !||||||||| !||||||:!!:!!|||:!!! !:!! !!!!:|| LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 76 : sMetSerThrAlaLeuCysGlnLeuIleValGlnThrThrMetCysTrpIleLysG : 94 |:!!|||! !!.!:!!! !|||:!!|||:!!||||||..!!!:|||!::! !!!. sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCysPheThrAsnT 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGTTTCACCAACT : 1053578 95 : lnAspSerLeuGln >>>> Target Intron 1 >>>> ArgThrValArgG : 103 ! ||| !|||||| 613 bp |||! !:!!! !| yrAspLeuLeuGln++ ++ArgIleIleThrG 1053577 : ACGACCTTCTGCAGgt.........................agCGAATAATTACAG : 1052938 104 : luMetMetThrTyrValLysGluThrGlnGlnTyrGluLysGluIlePheTyrLys : 121 |||||!!:|||||||||||||||.!!||||||!:!|||!:!||||||.!!:!!!!. luMetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLeuHisAsn 1052937 : AAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCACAAC : 1052884 122 : TyrIleThrArgCysAspMetLeuCysIleCysThrIleValCysMetTyrAlaTh : 140 |||||| !!:!||| ! :!:!!!! ! ! !!:!!:!!:!!!! ! ||| ! TyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrTyrLeuCy 1052883 : TATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACATACCTCTG : 1052827 141 : rAlaThrGlyPheSerLeuGlyProAlaIleLeuProIleSerPheProAlaAspA : 159 !|||||| !!||| !|||||||||!.!:!!||||||! ! !!||||||::!..!| sAlaThrCysPheValLeuGlyProValValLeuProAsnProPheProSerSerA 1052826 : TGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGCAGTG : 1052770 160 : laGluTyrProPheArgValAsnTyrThrProMetAsnIleIleIleTyrAlaHis : 177 ||||||||||||||||||||||| !|||||||||||| !|||:!!||| !||| laGluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyrLeuHis 1052769 : CAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTACCTGCAC : 1052716 178 : GlnSerIleLeuSerTyrGlnCysAlaAlaHisSerCysValSerIlePheGlyAl : 196 ||||||.!!:!!|||!:!|||! !::!||||||! !|||||||||||||||||||| GlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePheGlyAl 1052715 : CAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTTCGGAGC : 1052659 197 : aLeuLeuLeuTrpPheThrAlaAlaArgPheGluCysLeuThrValGluLeuGluL : 215 |||||||||||||.!!|||||||||||||||.!.|||||||||:!!|||:!!:!!: aLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluValGlnG 1052658 : TCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTTCAAC : 1052602 216 : ysSerThrSerIleAsnThrLeuIleValCysIleLysLysGlnLeuSerLeuArg : 233 !!|||:!!||||||:!!! !||||||:!!|||:!!|||||||||||| !|||||| lnSerSerSerIleHisMetLeuIleIleCysValLysLysGlnLeuLeuLeuArg 1052601 : AAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCTACTACTGAGG : 1052548 234 : {Ar} >>>> Target Intron 2 >>>> {g}TyrAlaGluGluValLeuAs : 241 {||} 65 bp {|}||||||:!!||||||:!!:! {Ar}++ ++{g}TyrAlaLysGluValValAs 1052547 : {AG}gt.........................ag{G}TACGCCAAAGAAGTGGTTGA : 1052459 242 : nAsnPheArgIleMetValLeuPheSerIleIleIleSerThrLeuValLeuThrP : 260 !..!||||||:!!!!:|||||| !:!!||| !!!:|||! !|||!.!||||||. pGlyPheArgLeuIleValLeuAsnAlaIleAlaMetSerIleLeuAlaLeuThrL 1052458 : CGGTTTTCGGCTTATAGTACTCAACGCTATAGCAATGAGCATTTTGGCTCTTACTC : 1052402 261 : heGlyGlyIleIleLeuIleVal >>>> Target Intron 3 >>>> AsnS : 269 !..!!.!!|||! !||||||:!! 62 bp .!.! euSerSerIleThrLeuIleMet++ ++GluI 1052401 : TAAGTAGTATTACATTAATAATGgt.........................agGAAA : 1052313 270 : erProLeuLeuLeuLysLeuGlnPheValIleValSerLeuThrValLeuThrGlu : 287 !||||||:!!:!!|||:!!|||||||||! !||||||!!!|||||||||.!!||| leProLeuIleValLysValGlnPheValThrValSerPheThrValLeuAlaGlu 1052312 : TACCGTTAATTGTGAAAGTGCAATTCGTAACTGTAAGCTTCACTGTACTCGCAGAA : 1052259 288 : ValPheMetTyrAlaTrpProAlaAspHisLeuArgGluMet >>>> Target : 302 :!!!:!|||||||||||| !!||||||:!!:!!!:!!!:||| 80 IleTyrMetTyrAlaTrpSerAlaAspTyrMetLysAspMet++ 1052258 : ATTTATATGTACGCATGGTCAGCTGACTACATGAAAGACATGgt............ : 1052212 303 : Intron 4 >>>> SerAlaAsnValSerArgSerAlaTyrAsnLeuIleTrpTy : 315 bp ||||||!!.||||||!:!|||!.!|||:!!|||! ||||| ++SerAlaLysValSerGlnSerValTyrAspLeuThrTrpTy 1052211 : .............agAGTGCAAAGGTTTCACAAAGTGTGTATGATTTAACGTGGTA : 1052095 316 : rLysGlnThrLeuGluIleGlnLysAsnLeuLeuAsnValLeuValPheGlnGluP : 334 | !||||||||||||:::|||||||||:::||| :::|||||| !||||||| rGlyGlnThrLeuGluMetGlnLysAsnValLeuTyrIleLeuValHisGlnGluP 1052094 : CGGACAAACATtggaaatgcagaaaaatgtattatacatattgGTACACCAAGAAC : 1052038 335 : roValThrLeuSerValSerCysValLeuProGluLeuSerLeuArgTyrTyrCys : 352 |||||! !|||||||||||||||:!!:!!||||||||||||||||||||||||||| roValIleLeuSerValSerCysIleValProGluLeuSerLeuArgTyrTyrCys 1052037 : CGGTAATTCTGTCAGTTAGTTGCATCGTGCCGGAGCTTTCTCTTCGTTATTATTGC : 1051984 353 : Ser >>>> Target Intron 5 >>>> TyrLeuSerAsnAlaMetSerIle : 361 ||| 65 bp |||||||||||||||.!.|||:!! Ser++ ++TyrLeuSerAsnAlaPheSerVal 1051983 : TCGgt.........................agTACCTGTCAAATGCGTTCTCGGTT : 1051892 362 : PheThrAlaLeuArgAlaAlaIleGlyAspAsnSer : 373 |||||||||||||||!.!!.!:!:! !! !!.||| PheThrAlaLeuArgValValLeuAspAlaLysSer 1051891 : TTCACCGCTTTGCGCGTCGTGCTGGATGCAAAATCA : 1051854 vulgar: gi|350405970|ref|XP_003487614.1| 0 373 . KQ414618.1 1053857 1051853 - 1101 M 98 294 5 0 2 I 0 609 3 0 2 M 135 405 S 0 2 5 0 2 I 0 61 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 34 102 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 61 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1051854 1053857 1101 - . gene_id 1 ; sequence gi|350405970|ref|XP_003487614.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1053564 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053564 1053857 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1053562 1053563 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052951 1053563 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052951 1052952 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052544 1052950 . - . KQ414618.1 exonerate:protein2genome:local exon 1052544 1052950 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052542 1052543 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052479 1052543 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1052479 1052480 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052379 1052478 . - . KQ414618.1 exonerate:protein2genome:local exon 1052379 1052478 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052377 1052378 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052317 1052378 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1052317 1052318 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052215 1052316 . - . KQ414618.1 exonerate:protein2genome:local exon 1052215 1052316 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052213 1052214 . - . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052135 1052214 . - . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 1052135 1052136 . - . intron_id 3 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051979 1052134 . - . KQ414618.1 exonerate:protein2genome:local exon 1051979 1052134 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1051977 1051978 . - . intron_id 5 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1051914 1051978 . - . intron_id 5 KQ414618.1 exonerate:protein2genome:local splice3 1051914 1051915 . - . intron_id 4 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051854 1051913 . - . KQ414618.1 exonerate:protein2genome:local exon 1051854 1051913 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1051854 1053857 1101 - . alignment_id 1 ; Query gi|350405970|ref|XP_003487614.1| ; Align 1053858 1 294 ; Align 1052951 99 405 ; Align 1052478 235 99 ; Align 1052317 268 102 ; Align 1052135 302 156 ; Align 1051914 354 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350405970|ref|XP_003487614.1| PREDICTED: odorant receptor 24a-like [Bombus impatiens] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 282 Query range: 94 -> 234 Target range: 1029185 -> 1028765 95 : AspSerLeuGlnArgThrValArgGluMetMetThrTyrValLysGluThrGlnGl : 113 |||!!!||||||!:! !:!!..!||||||! !! !! ! !:!! !.!!:!!! AspThrLeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysPr 1029185 : GACACGTTGCAGAAACTAATCGAAGAAATGAAGATTTGCTGTGAAACAGCGAAACC : 1029131 114 : nTyrGluLysGluIlePheTyrLysTyrIleThrArgCysAspMetLeuCysIleC : 132 !||||||!:!!!::!!||| ! ::!|||:!! !!:!! !..!:!:!!!! !:!! oTyrGluArgAspValPheGlnArgTyrValAspLysTyrSerLeuPheTyrValT 1029130 : ATACGAAAGAGACGTCTTTCAACGATACGTCGATAAATACTCTTTATTTTACGTAA : 1029074 133 : ysThrIleValCysMetTyrAlaThrAlaThrGlyPheSerLeuGlyProAlaIle : 150 ! !!! .!.||| !||||||..! !.!. !|||||| ! !||| hrCysSerSerTrpPheTyrLeuThrAlaValIleMetValLeuGlySerArgIle 1029073 : CATGTTCGTCGTGGTTTTACTTAACAGCAGTTATTATGGTTCTGGGAAGTCGGATT : 1029020 151 : LeuProIleSerPheProAlaAspAlaGluTyrProPheArgValAsnTyrThrPr : 169 :!! !! ! !!||||||.!!:!!|||! !|||||||||! !||||||!:! !|| IleSerAspProPheProThrAsnAlaValTyrProPheProValAsnPheGluPr 1029019 : ATATCTGATCCTTTTCCAACCAACGCCGTATATCCATTCCCTGTTAACTTTGAACC : 1028963 170 : oMetAsnIleIleIleTyrAlaHisGlnSerIleLeuSerTyrGlnCysAlaAlaH : 188 |:!!!..! !||||||!:! !|||||||||.!!:!!.!! ||||||||||||| oLeuArgSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaH 1028962 : CTTGAGAAGTATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCAC : 1028906 189 : isSerCysValSerIlePheGlyAlaLeuLeuLeuTrpPheThrAlaAlaArgPhe : 206 ||!!! !!:!!!:!:!:.!. !|||||||||||| |||.!!|||||||||||| isThrSerMetAsnValLeuThrAlaLeuLeuLeuLeuPheAlaAlaAlaArgPhe 1028905 : ACACTAGTATGAATGTGCTAACTGCATTGTTATTACTATTTGCTGCAGCTCGTTTC : 1028852 207 : GluCysLeuThrValGluLeuGluLysSerThrSerIleAsnThrLeuIleValCy : 225 ||| |||! !:!!||||||..!!!. !!:!..!|||.!.||||||||| !|| GluIleLeuMetMetGluLeuArgAsnValSerAspIleGluThrLeuIleLysCy 1028851 : GAGATACTGATGATGGAGCTGAGGAATGTCAGTGACATTGAAACACTGATTAAATG : 1028795 226 : sIleLysLysGlnLeuSerLeuArgArg : 234 |!!:|||||| ! ! !! !:!!|||||| sMetLysLysTyrSerIleValArgArg 1028794 : TATGAAAAAGTATTCGATCGTACGGAGG : 1028766 vulgar: gi|350405970|ref|XP_003487614.1| 94 234 . KQ414618.1 1029185 1028765 - 282 M 140 420 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028766 1029185 282 - . gene_id 2 ; sequence gi|350405970|ref|XP_003487614.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028766 1029185 . - . KQ414618.1 exonerate:protein2genome:local exon 1028766 1029185 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028766 1029185 282 - . alignment_id 2 ; Query gi|350405970|ref|XP_003487614.1| ; Align 1029186 95 420 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350405970|ref|XP_003487614.1| PREDICTED: odorant receptor 24a-like [Bombus impatiens] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 274 Query range: 94 -> 234 Target range: 1038352 -> 1037932 95 : AspSerLeuGlnArgThrValArgGluMetMetThrTyrValLysGluThrGlnGl : 113 |||!!!||||||!:! !:!!..!||||||! !! !! ! !:!! !.!!:!!! AspThrLeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysPr 1038352 : GACACGTTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACC : 1038298 114 : nTyrGluLysGluIlePheTyrLysTyrIleThrArgCysAspMetLeuCysIleC : 132 !||||||!:!!!::!!||| ! ::!|||:!!!.!!:! ...:::... ||| oTyrGluArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleT 1038297 : ATACGAAAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataa : 1038241 133 : ysThrIleValCysMetTyrAlaThrAlaThrGlyPheSerLeuGlyProAlaIle : 150 ! !!! .!.||| !||||||! ! !.!. !|||||| ! !:!! hrCysSerSerTrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeu 1038240 : catGTTCGTCATGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTT : 1038187 151 : LeuProIleSerPheProAlaAspAlaGluTyrProPheArgValAsnTyrThrPr : 169 :!! !! ! !!||||||.!!:!!|||! !|||||||||! !||||||!:! !|| IleSerAspProPheProThrAsnAlaValTyrProPheProValAsnPheGluPr 1038186 : ATATCCGATCCTTTTCCAACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACC : 1038130 170 : oMetAsnIleIleIleTyrAlaHisGlnSerIleLeuSerTyrGlnCysAlaAlaH : 188 |:!!!..! !||||||!:! !|||||||||.!!:!!.!! ||||||||||||| oLeuArgSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaH 1038129 : CTTGAGAAGCATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCAC : 1038073 189 : isSerCysValSerIlePheGlyAlaLeuLeuLeuTrpPheThrAlaAlaArgPhe : 206 ||:!! !!:!!!:!:!:.!!..!|||||||||||| ||||||.!!||||||||| isAlaSerMetAsnValLeuSerAlaLeuLeuLeuLeuPheThrThrAlaArgPhe 1038072 : ACGCTAGTATGAATGTGCTTTCTGCACTGTTATTGCTATTCACTACAGCtcgtttc : 1038019 207 : GluCysLeuThrValGluLeuGluLysSerThrSerIleAsnThrLeuIleValCy : 225 ||| ||| !..!||||||..!!!. !!.!..!|||.!.||||||||| ! ! GluIleLeuMetThrGluLeuArgAsnValAsnAspIleGluThrLeuIleLysSe 1038018 : gaaatattgaTGACGGAGTTGAGGAATGTCAATGATATCGAAACACTGATTAAGAG : 1037962 226 : sIleLysLysGlnLeuSerLeuArgArg : 234 !!!:|||||| ! ! !!!!:!!|||||| rMetLysLysTyrSerThrValArgArg 1037961 : TATGAAAAAGTATTCGACTGTGCGGAGG : 1037933 vulgar: gi|350405970|ref|XP_003487614.1| 94 234 . KQ414618.1 1038352 1037932 - 274 M 140 420 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037933 1038352 274 - . gene_id 3 ; sequence gi|350405970|ref|XP_003487614.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1037933 1038352 . - . KQ414618.1 exonerate:protein2genome:local exon 1037933 1038352 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037933 1038352 274 - . alignment_id 3 ; Query gi|350405970|ref|XP_003487614.1| ; Align 1038353 95 420 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350405970|ref|XP_003487614.1| PREDICTED: odorant receptor 24a-like [Bombus impatiens] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 156 Query range: 0 -> 98 Target range: 1058517 -> 1058223 1 : MetLeuArgGlnValThrProGluLysValIleHisIleValTrpLeuSerAlaAl : 19 ||| !!:!...:!!|||||||||:!!!.!||| .!!..! ||||||!.!|| MetArgLysSerIleThrProGluGlnAlaIleSerPheThrLysLeuSerValAl 1058517 : ATGAGGAAAAGTATAACGCCGGAACAAGCGATCTCGTTCACGAAACTGAGCGTCGC : 1058463 20 : aLeuSerPheCysTrpProLeuProIleSerSerSerArgThrArgValLeuGlyP : 38 |:!!!!!! !! ||||||! ! !! ! !:!!!!!||||||!:!|||||| !| aValThrCysSerTrpProProSerProLeuAlaThrArgThrGlnValLeuLeuP 1058462 : TGTAACTTGTTCGTGGCCACCGTCACCTCTGGCGACCAGAACTCAAGTTTTGCTCT : 1058406 39 : heArgIleLeuGlnIleSerAlaIleIleSerAlaCysMetLeuLeuLeuProMet : 56 ||!.!! ||| !! !!!!|||.!!:!!|||.!! ! !||||||||||||:!: heAsnThrLeuTrpSerThrAlaPheValSerThrIleAlaLeuLeuLeuProLeu 1058405 : TTAATACGTTGTGGAGCACAGCATTCGTTAGCACCATCGCGCTGCTTTTGCCGCTA : 1058352 57 : LeuTyrSerIleTyrLeuHisProAspAspLeuValValValPheLysCysMetCy : 75 ||| !.!!|||||| !:!!! ! ! |||! !:!!:!!:!! ||| :!: ! LeuSerGlyIleTyrGluTyrArgLysAspProIleIleLeuGlyLysThrValSe 1058351 : TTGAGCGGAATTTACGAGTACCGTAAAGACCCCATCATTCTTGGGAAAACAGTCAG : 1058295 76 : sMetSerThrAlaLeuCysGlnLeuIleValGlnThrThrMetCysTrpIleLysG : 94 !:!::!!:!!|||:!!..!|||:!! !:!!:!!! !! !|||||| ! .!!:!!| rLeuAlaSerAlaValAlaGlnValAlaIleLysMetIleMetCysArgPheGlnG 1058294 : CCTCGCCTCGGCTGTCGCCCAGGTGGCAATCAAAATGATAATGTGCCGTTTCCAGC : 1058238 95 : lnAspSerLeuGln : 98 || ! ..!!!!||| lnLysGlnPheGln 1058237 : AGAAGCAATTCCAG : 1058224 vulgar: gi|350405970|ref|XP_003487614.1| 0 98 . KQ414618.1 1058517 1058223 - 156 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1058224 1058517 156 - . gene_id 4 ; sequence gi|350405970|ref|XP_003487614.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1058224 1058517 . - . KQ414618.1 exonerate:protein2genome:local exon 1058224 1058517 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1058224 1058517 156 - . alignment_id 4 ; Query gi|350405970|ref|XP_003487614.1| ; Align 1058518 1 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350405074|ref|XP_003487316.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1050 Query range: 0 -> 369 Target range: 1053857 -> 1051865 1 : MetLeuLysGlnIleThrAlaGluLysValIleHisIleThrTrpLeuSerValVa : 19 ||||||||||||:!:||| !!|||||||||||| !!|||! !|||!!!||||||!. MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : lIleSerLeuCysTrpProLeuProIleAsnSerAsnArgAsnLysIlePheCysP : 38 !:!::!!:!!|||||||||||| !!! !::!:!!!:!!:! !:!!:!! ...| aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 39 : heLysIleLeuGlnIleCysSerGlyIleSerGlyCysLeuLeuPheMetProIle : 56 |||||||||||||||||||||||!.!||||||!.! !:!!|||.!!:!:|||:!: heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 57 : LeuTyrSerIleTyrLeuHisLeuAsnAspIleValIleThrSerSerCysMetCy : 75 |||||||||! !|||||||||!!!:!!|||:!!:!!:!! !|||..! !!!!:|| LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 76 : sLeuLeuLeuGlyValSerGlnAsnIlePheGlnThrLeuIleCysPheIleLysH : 94 ||||! !:!!||||||! !|||! |||.!.||||||:!!|||||||||! !!!.: sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCysPheThrAsnT 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGTTTCACCAACT : 1053578 95 : isAspSerLeuGln >>>> Target Intron 1 >>>> ArgThrValGluG : 103 !!||| !|||||| 613 bp |||! !:!! !| yrAspLeuLeuGln++ ++ArgIleIleThrG 1053577 : ACGACCTTCTGCAGgt.........................agCGAATAATTACAG : 1052938 104 : luMetMetThrTyrValLysGluAlaGlnGlnTyrGluLysLysIlePheTyrLys : 121 |||||!!:||||||||||||||||||||||||!:!|||!:!:!!|||.!!:!!!!. luMetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLeuHisAsn 1052937 : AAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCACAAC : 1052884 122 : TyrIleLysLysCysTyrValPheCysGlyGlySerMetAlaCysThrTyrValTh : 140 ||||||:!!|||||| ! :!!|||! !|||||||||:!: !!! ||||||:!! TyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrTyrLeuCy 1052883 : TATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACATACCTCTG : 1052827 141 : rAlaThrCysPheSerLeuArgProIleIleLeuProValSerLeuProPheAspA : 159 !|||||||||||| !||| !!|||:!!:!!|||||| ! !!!!!||| !..!| sAlaThrCysPheValLeuGlyProValValLeuProAsnProPheProSerSerA 1052826 : TGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGCAGTG : 1052770 160 : laGluTyrProPheProIleAsnTyrThrSerMetTyrIleIleIleTyrMetHis : 177 ||||||||||||||! !:!!||| !||| !!||| !! !|||:!!|||:!!||| laGluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyrLeuHis 1052769 : CAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTACCTGCAC : 1052716 178 : HisAlaCysLeuCysIleGlnThrAlaAlaHisValCysValSerSerPheGlyAl : 196 !!.:!!! !:!! !!.!!||| !::!||||||:!!|||||||||! !|||||||| GlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePheGlyAl 1052715 : CAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTTCGGAGC : 1052659 197 : aLeuLeuLeuTrpPheThrValAlaArgPheGluCysLeuAlaAlaGluLeuGluA : 215 |||||||||||||.!!|||!.!|||||||||.!.||||||.!! !|||:!!:!!! aLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluValGlnG 1052658 : TCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTTCAAC : 1052602 216 : rgSerThrAspPheAspAlaLeuValValCysValLysLysGlnLeuHisLeuLys : 233 :!|||:!!..!.!! !! !|||:!!:!!||||||||||||||||||! |||!:! lnSerSerSerIleHisMetLeuIleIleCysValLysLysGlnLeuLeuLeuArg 1052601 : AAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCTACTACTGAGG : 1052548 234 : {Ar} >>>> Target Intron 2 >>>> {g}TyrAlaGluGluValPheAs : 241 {||} 65 bp {|}||||||:!!|||||| !!:! {Ar}++ ++{g}TyrAlaLysGluValValAs 1052547 : {AG}gt.........................ag{G}TACGCCAAAGAAGTGGTTGA : 1052459 242 : nSerPheArgPheLeuValLeuTyrAlaIleGlyValAlaThrPheGlyIleThrL : 260 !.!!||||||.!!:!!|||||| !!||||||!.!:!!::!! !!!.!.!:!!|||| pGlyPheArgLeuIleValLeuAsnAlaIleAlaMetSerIleLeuAlaLeuThrL 1052458 : CGGTTTTCGGCTTATAGTACTCAACGCTATAGCAATGAGCATTTTGGCTCTTACTC : 1052402 261 : euCysPheLeuMetValLeuVal >>>> Target Intron 3 >>>> AsnV : 269 || !! !:!!! :!!:!!:!! 62 bp .!.: euSerSerIleThrLeuIleMet++ ++GluI 1052401 : TAAGTAGTATTACATTAATAATGgt.........................agGAAA : 1052313 270 : alProLeuPheValLysLeuGlnPheIleGlyValCysValThrValLeuMetGlu : 287 !!||||||.!!||||||:!!||||||:!! !||| !! !!||||||||| ||| leProLeuIleValLysValGlnPheValThrValSerPheThrValLeuAlaGlu 1052312 : TACCGTTAATTGTGAAAGTGCAATTCGTAACTGTAAGCTTCACTGTACTCGCAGAA : 1052259 288 : IleTyrLeuTyrAlaTrpProAlaAspTyrLeuLysAspMet >>>> Target : 302 ||||||:!!||||||||| !!|||||||||:!!||||||||| 80 IleTyrMetTyrAlaTrpSerAlaAspTyrMetLysAspMet++ 1052258 : ATTTATATGTACGCATGGTCAGCTGACTACATGAAAGACATGgt............ : 1052212 303 : Intron 4 >>>> SerMetAspAlaProGlnSerIleTyrAsnSerThrTrpTy : 315 bp ||| ! !.! !!||||||:!:|||:!!! !|||||||| ++SerAlaLysValSerGlnSerValTyrAspLeuThrTrpTy 1052211 : .............agAGTGCAAAGGTTTCACAAAGTGTGTATGATTTAACGTGGTA : 1052095 316 : rGluGlnLysLeuArgMetGlnLysSerLeuLeuAsnValLeuIleTyrArgGlnP : 334 |! !|||! !|||...|||||||||::::::||| :::|||:!!:!!!:!:!!| rGlyGlnThrLeuGluMetGlnLysAsnValLeuTyrIleLeuValHisGlnGluP 1052094 : CGGACAAACATtggaaatgcagaaaaatgtattatacatattgGTACACCAAGAAC : 1052038 335 : roLeuThrLeuSerIleAlaCysIleValProGluLeuSerLeuArgTyrTyrCys : 352 ||:!!! !||||||:!!::!|||||||||||||||||||||||||||||||||||| roValIleLeuSerValSerCysIleValProGluLeuSerLeuArgTyrTyrCys 1052037 : CGGTAATTCTGTCAGTTAGTTGCATCGTGCCGGAGCTTTCTCTTCGTTATTATTGC : 1051984 353 : Ser >>>> Target Intron 5 >>>> TyrLeuSerAsnAlaPheSerMet : 361 ||| 65 bp |||||||||||||||||||||:!: Ser++ ++TyrLeuSerAsnAlaPheSerVal 1051983 : TCGgt.........................agTACCTGTCAAATGCGTTCTCGGTT : 1051892 362 : PheThrThrLeuArgValMetIle : 369 ||||||.!!|||||||||:!!:!: PheThrAlaLeuArgValValLeu 1051891 : TTCACCGCTTTGCGCGTCGTGCTG : 1051866 vulgar: gi|350405074|ref|XP_003487316.1| 0 369 . KQ414618.1 1053857 1051865 - 1050 M 98 294 5 0 2 I 0 609 3 0 2 M 135 405 S 0 2 5 0 2 I 0 61 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 34 102 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 61 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1051866 1053857 1050 - . gene_id 1 ; sequence gi|350405074|ref|XP_003487316.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1053564 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053564 1053857 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1053562 1053563 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052951 1053563 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052951 1052952 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052544 1052950 . - . KQ414618.1 exonerate:protein2genome:local exon 1052544 1052950 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052542 1052543 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052479 1052543 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1052479 1052480 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052379 1052478 . - . KQ414618.1 exonerate:protein2genome:local exon 1052379 1052478 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052377 1052378 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052317 1052378 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1052317 1052318 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052215 1052316 . - . KQ414618.1 exonerate:protein2genome:local exon 1052215 1052316 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052213 1052214 . - . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052135 1052214 . - . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 1052135 1052136 . - . intron_id 3 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051979 1052134 . - . KQ414618.1 exonerate:protein2genome:local exon 1051979 1052134 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1051977 1051978 . - . intron_id 5 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1051914 1051978 . - . intron_id 5 KQ414618.1 exonerate:protein2genome:local splice3 1051914 1051915 . - . intron_id 4 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051866 1051913 . - . KQ414618.1 exonerate:protein2genome:local exon 1051866 1051913 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1051866 1053857 1050 - . alignment_id 1 ; Query gi|350405074|ref|XP_003487316.1| ; Align 1053858 1 294 ; Align 1052951 99 405 ; Align 1052478 235 99 ; Align 1052317 268 102 ; Align 1052135 302 156 ; Align 1051914 354 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350405074|ref|XP_003487316.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 244 Query range: 94 -> 234 Target range: 1029185 -> 1028765 95 : AspSerLeuGlnArgThrValGluGluMetMetThrTyrValLysGluAlaGlnGl : 113 |||!!!||||||!:! !:!!|||||||||! !! !! ! !:!! !|||:!!! AspThrLeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysPr 1029185 : GACACGTTGCAGAAACTAATCGAAGAAATGAAGATTTGCTGTGAAACAGCGAAACC : 1029131 114 : nTyrGluLysLysIlePheTyrLysTyrIleLysLysCysTyrValPheCysGlyG : 132 !||||||!:! ! :!!||| ! ::!|||:!! ! |||! !! !:!!|||! !! ! oTyrGluArgAspValPheGlnArgTyrValAspLysTyrSerLeuPheTyrValT 1029130 : ATACGAAAGAGACGTCTTTCAACGATACGTCGATAAATACTCTTTATTTTACGTAA : 1029074 133 : lySerMetAlaCysThrTyrValThrAlaThrCysPheSerLeuArgProIleIle : 150 !!!! !:!!!! !|||:!!||||||..! !.!. !||| !! ! ||| hrCysSerSerTrpPheTyrLeuThrAlaValIleMetValLeuGlySerArgIle 1029073 : CATGTTCGTCGTGGTTTTACTTAACAGCAGTTATTATGGTTCTGGGAAGTCGGATT : 1029020 151 : LeuProValSerLeuProPheAspAlaGluTyrProPheProIleAsnTyrThrSe : 169 :!! !!! ! !!!!!||| !:!!|||! !||||||||||||:!!|||!:! ! ! IleSerAspProPheProThrAsnAlaValTyrProPheProValAsnPheGluPr 1029019 : ATATCTGATCCTTTTCCAACCAACGCCGTATATCCATTCCCTGTTAACTTTGAACC : 1028963 170 : rMetTyrIleIleIleTyrMetHisHisAlaCysLeuCysIleGlnThrAlaAlaH : 188 !:!! ! !||||||!:!||||||!!.:!!! !:!! !!|||||| !||||||| oLeuArgSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaH 1028962 : CTTGAGAAGTATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCAC : 1028906 189 : isValCysValSerSerPheGlyAlaLeuLeuLeuTrpPheThrValAlaArgPhe : 206 ||..! !!:!!!:! !.!. !|||||||||||| |||.!!!.!||||||||| isThrSerMetAsnValLeuThrAlaLeuLeuLeuLeuPheAlaAlaAlaArgPhe 1028905 : ACACTAGTATGAATGTGCTAACTGCATTGTTATTACTATTTGCTGCAGCTCGTTTC : 1028852 207 : GluCysLeuAlaAlaGluLeuGluArgSerThrAspPheAspAlaLeuValValCy : 225 ||| ||| ! !||||||..!!.! !!:!|||.!!!!:.!!|||:!! !|| GluIleLeuMetMetGluLeuArgAsnValSerAspIleGluThrLeuIleLysCy 1028851 : GAGATACTGATGATGGAGCTGAGGAATGTCAGTGACATTGAAACACTGATTAAATG : 1028795 226 : sValLysLysGlnLeuHisLeuLysArg : 234 |:!!|||||| ! ! ! !:!!::!||| sMetLysLysTyrSerIleValArgArg 1028794 : TATGAAAAAGTATTCGATCGTACGGAGG : 1028766 vulgar: gi|350405074|ref|XP_003487316.1| 94 234 . KQ414618.1 1029185 1028765 - 244 M 140 420 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028766 1029185 244 - . gene_id 2 ; sequence gi|350405074|ref|XP_003487316.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028766 1029185 . - . KQ414618.1 exonerate:protein2genome:local exon 1028766 1029185 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028766 1029185 244 - . alignment_id 2 ; Query gi|350405074|ref|XP_003487316.1| ; Align 1029186 95 420 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350405074|ref|XP_003487316.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 243 Query range: 94 -> 234 Target range: 1038352 -> 1037932 95 : AspSerLeuGlnArgThrValGluGluMetMetThrTyrValLysGluAlaGlnGl : 113 |||!!!||||||!:! !:!!|||||||||! !! !! ! !:!! !|||:!!! AspThrLeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysPr 1038352 : GACACGTTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACC : 1038298 114 : nTyrGluLysLysIlePheTyrLysTyrIleLysLysCysTyrValPheCysGlyG : 132 !||||||!:! ! :!!||| ! ::!|||:!!!!.||| :::||| oTyrGluArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleT 1038297 : ATACGAAAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataa : 1038241 133 : lySerMetAlaCysThrTyrValThrAlaThrCysPheSerLeuArgProIleIle : 150 !! !:!!!! !|||:!!||||||! ! !.!. !||| !! !:!::!! hrCysSerSerTrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeu 1038240 : catGTTCGTCATGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTT : 1038187 151 : LeuProValSerLeuProPheAspAlaGluTyrProPheProIleAsnTyrThrSe : 169 :!! !!! ! !!!!!||| !:!!|||! !||||||||||||:!!|||!:! ! ! IleSerAspProPheProThrAsnAlaValTyrProPheProValAsnPheGluPr 1038186 : ATATCCGATCCTTTTCCAACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACC : 1038130 170 : rMetTyrIleIleIleTyrMetHisHisAlaCysLeuCysIleGlnThrAlaAlaH : 188 !:!! ! !||||||!:!||||||!!.:!!! !:!! !!|||||| !||||||| oLeuArgSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaH 1038129 : CTTGAGAAGCATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCAC : 1038073 189 : isValCysValSerSerPheGlyAlaLeuLeuLeuTrpPheThrValAlaArgPhe : 206 ||!.! !!:!!!:! !.!!..!|||||||||||| ||||||..!||||||||| isAlaSerMetAsnValLeuSerAlaLeuLeuLeuLeuPheThrThrAlaArgPhe 1038072 : ACGCTAGTATGAATGTGCTTTCTGCACTGTTATTGCTATTCACTACAGCtcgtttc : 1038019 207 : GluCysLeuAlaAlaGluLeuGluArgSerThrAspPheAspAlaLeuValValCy : 225 ||| ||| !.!!||||||..!!.! !!.!|||.!!!!:.!!|||:!! ! ! GluIleLeuMetThrGluLeuArgAsnValAsnAspIleGluThrLeuIleLysSe 1038018 : gaaatattgaTGACGGAGTTGAGGAATGTCAATGATATCGAAACACTGATTAAGAG : 1037962 226 : sValLysLysGlnLeuHisLeuLysArg : 234 !:!!|||||| ! ! ! !:!!::!||| rMetLysLysTyrSerThrValArgArg 1037961 : TATGAAAAAGTATTCGACTGTGCGGAGG : 1037933 vulgar: gi|350405074|ref|XP_003487316.1| 94 234 . KQ414618.1 1038352 1037932 - 243 M 140 420 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037933 1038352 243 - . gene_id 3 ; sequence gi|350405074|ref|XP_003487316.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1037933 1038352 . - . KQ414618.1 exonerate:protein2genome:local exon 1037933 1038352 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037933 1038352 243 - . alignment_id 3 ; Query gi|350405074|ref|XP_003487316.1| ; Align 1038353 95 420 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350405074|ref|XP_003487316.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 267 -> 369 Target range: 1056077 -> 1055705 268 : AsnValProLeuPheValLysLeuGlnPheIleGlyValCysValThrValLeuMe : 286 ||| !||||||.!!:!!||| ! !!:! ! !||| !!!:!!.! !:! AsnGlnProLeuLeuLeuLysAlaLeuTyrAlaValValValPheSerAlaSerVa 1056077 : AATCAACCATTGCTTTTGAAAGCTTTATACGCGGTCGTAGTATTCAGCGCCAGCGT : 1056023 287 : tGluIleTyrLeuTyrAlaTrpProAlaAspTyrLeuLysAspMet >>>> Tar : 302 !|||:!!!:!:!!|||||||||||||||||| !!|||! ! !||| lGluLeuPheMetTyrAlaTrpProAlaAspAsnLeuMetArgMet++ 1056022 : GGAGCTCTTCATGTACGCTTGGCCTGCGGATAATTTGATGCGTATGgt........ : 1055973 303 : get Intron 1 >>>> SerMetAspAlaProGlnSerIleTyrAsnSerThrT : 314 63 bp |||! ! ! ! !! !..!|||||||||!!! !| ++SerThrLysLeuAlaAlaAspIleTyrAsnThrAspT 1055972 : .................agAGTACGAAGCTTGCGGCAGATATTTACAACACAGATT : 1055876 315 : rpTyrGluGlnLysLeuArgMetGlnLysSerLeuLeuAsnValLeuIleTyrArg : 332 ||!:!|||:!! ! :!!|||:!!||||||!.!:!!! ! !!:!!:!! ! ! rpPheGluLysAspIleArgLeuGlnLysLysValTyrTyrIleIleGlnArgSer 1055875 : GGTTCGAAAAGGATATTAGATTGCAAAAAAAGGTATACTATATTATACAAAGGTCT : 1055822 333 : GlnProLeu<->ThrLeuSerIleAlaCysIleValProGluLeuSerLeuArgTy : 350 ||| !||| .!!:!! !!||| ! !!|||||||||:!!|||||||||! !|| GlnArgLeuGluAlaIleArgIleAsnGlyIleValProLysLeuSerLeuProTy 1055821 : CAGAGGCTCGAAGCTATTCGAATTAATGGCATAGTTCCAAAACTATCCCTGCCATA : 1055765 351 : rTyrCysSerTyrLeuSerAsnAlaPheSerMetPheThrThrLeuArgValMetI : 369 ||||...! ! !!!!!.! ! !!:!!:!:||| ! !:!! ! !:!:: rTyrAlaMetValGlyThrThrPheValAlaLeuPheLeuLeuIleSerGlnLeuL 1055764 : CTATGCAATGGTAGGTACTACTTTTGTTGCACTTTTTCTTCTAATCTCACAATTAT : 1055708 370 : le : 369 !! eu 1055707 : TA : 1055706 vulgar: gi|350405074|ref|XP_003487316.1| 267 369 . KQ414618.1 1056077 1055705 - 139 M 34 102 5 0 2 I 0 59 3 0 2 M 34 102 G 0 3 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1055706 1056077 139 - . gene_id 4 ; sequence gi|350405074|ref|XP_003487316.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1055976 1056077 . - . KQ414618.1 exonerate:protein2genome:local exon 1055976 1056077 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1055974 1055975 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1055913 1055975 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1055913 1055914 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1055706 1055912 . - . KQ414618.1 exonerate:protein2genome:local exon 1055706 1055912 . - . insertions 3 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1055706 1056077 139 - . alignment_id 4 ; Query gi|350405074|ref|XP_003487316.1| ; Align 1056078 268 102 ; Align 1055913 302 102 ; Align 1055808 336 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350405014|ref|XP_003487292.1| PREDICTED: odorant receptor 49b-like [Bombus impatiens] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 701 Query range: 0 -> 234 Target range: 1030017 -> 1028765 1 : MetPheArgAsnAlaThrProGluThrAlaIleAlaPheThrGluPheIleLeuGl : 19 |||!!.!:! !! !!!:!||||||! !||||||:!!.!!..!:!! !!||| !!. MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1030017 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1029963 20 : yLeuSerCysCysTrpProLeuProSerThrAlaThrLysSerGlnIleLeuCysP : 38 !!!!!!!||||||||||||||||||||||||||||||||||||! !:!:||| | aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1029962 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1029906 39 : heLysIleLeuArgSerValLeuPheLeuAsnSerLeuLeuLeuPheCysProLeu : 56 ||||||||||||||||| !!|||.!!||||||:!!|||:!!|||||| |||||| heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1029905 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1029852 57 : LeuTyrAlaIleTyrValHisArgGluAspThrAlaMetPheCysLysSerValSe : 75 |||||||||:!::!!|||||||||.!.|||.!!! !! !!...|||:!!!.!!! LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1029851 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1029795 76 : rLeuThrLeuAlaValValHisValProLeuHisSerThrTyrCysPheSerGlnH : 94 !||||||||||||:::|||...::: ......::! ! !|||.!!.!!|||: sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1029794 : CCTGACGCTTGCCctcgtgcaaatatttttccagacTTTCGTTTGCATCGGCCAAT : 1029738 95 : isAspArgTyrGln >>>> Target Intron 1 >>>> ArgLeuIleGluG : 103 !!|||!.!!:!||| 550 bp !:!|||||||||| yrAspHisPheGln++ ++LysLeuIleGluG 1029737 : ACGATCATTTTCAGgt.........................agAAACTAATCGAAG : 1029161 104 : luMetLysSerCysCysGluLysGlyAsnSerTyrGluArgGlnIlePheGlnArg : 121 ||||||||! !|||||||||! !!.!!!. !!|||||||||.!.:!!||||||||| luMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheGlnArg 1029160 : AAATGAAGATTTGCTGTGAAACAGCGAAACCATACGAAAGAGACGTCTTTCAACGA : 1029107 122 : TyrValAspLysTyrAlaIleTyrTyrAlaAlaSerAlaValTrpPheTyrTrpSe : 140 |||||||||||||||:!!:!!!:!|||!.!.!!!!!:!! !|||||||||! !! TyrValAspLysTyrSerLeuPheTyrValThrCysSerSerTrpPheTyrLeuTh 1029106 : TACGTCGATAAATACTCTTTATTTTACGTAACATGTTCGTCGTGGTTTTACTTAAC : 1029050 141 : rProSerIleIleLeuIleGlyThrPhePheIleSerAspProPheProThrAsnA : 159 ! !! !|||!!::!!:!:|||!:! .!!||||||||||||||||||||||||| rAlaValIleMetValLeuGlySerArgIleIleSerAspProPheProThrAsnA 1029049 : AGCAGTTATTATGGTTCTGGGAAGTCGGATTATATCTGATCCTTTTCCAACCAACG : 1028993 160 : laGluTyrProPheProValAspPheGluProValArgSerIleIlePheLeuGln : 177 ||! !|||||||||||||||:!!|||||||||:!!|||||||||||||||:!!!!. laValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHis 1028992 : CCGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGTATCATTTTTATGCAC : 1028939 178 : GlnSerLeuValGlyMetGlnCysAlaSerLeuLeuCysThrAsnIleLeuCysAl : 196 ||||||!!!||||||!!:|||||||||:!!! ! ! !!! !|||:!:||| !|| GlnSerPheValGlyIleGlnCysAlaAlaHisThrSerMetAsnValLeuThrAl 1028938 : CAATCGTTCGTTGGCATACAGTGTGCTGCACACACTAGTATGAATGTGCTAACTGC : 1028882 197 : aLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuMetThrGluIleCysA : 215 |||||||||||||||||||||||||||||||||||||||||||! !|||:!: ! aLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuMetMetGluLeuArgA 1028881 : ATTGTTATTACTATTTGCTGCAGCTCGTTTCGAGATACTGATGATGGAGCTGAGGA : 1028825 216 : laValAsnGlyValLysSerLeuIleLysCysValLysLysTyrTyrThrLeuLys : 233 !|||!:!! !:!!:!!!!!||||||||||||:!!|||||||||! ! !:!!::! snValSerAspIleGluThrLeuIleLysCysMetLysLysTyrSerIleValArg 1028824 : ATGTCAGTGACATTGAAACACTGATTAAATGTATGAAAAAGTATTCGATCGTACGG : 1028771 234 : Arg : 234 ||| Arg 1028770 : AGG : 1028766 vulgar: gi|350405014|ref|XP_003487292.1| 0 234 . KQ414618.1 1030017 1028765 - 701 M 98 294 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028766 1030017 701 - . gene_id 1 ; sequence gi|350405014|ref|XP_003487292.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1029724 1030017 . - . KQ414618.1 exonerate:protein2genome:local exon 1029724 1030017 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1029722 1029723 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1029174 1029723 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1029174 1029175 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028766 1029173 . - . KQ414618.1 exonerate:protein2genome:local exon 1028766 1029173 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028766 1030017 701 - . alignment_id 1 ; Query gi|350405014|ref|XP_003487292.1| ; Align 1030018 1 294 ; Align 1029174 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350405014|ref|XP_003487292.1| PREDICTED: odorant receptor 49b-like [Bombus impatiens] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 692 Query range: 0 -> 234 Target range: 1039184 -> 1037932 1 : MetPheArgAsnAlaThrProGluThrAlaIleAlaPheThrGluPheIleLeuGl : 19 |||!!.!:! !! !!!:!||||||! !||||||:!!.!!..!:!! !!||| !!. MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1039184 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1039130 20 : yLeuSerCysCysTrpProLeuProSerThrAlaThrLysSerGlnIleLeuCysP : 38 !!!!!!!||||||||||||||||||||||||||||||||||||! !:!:||| | aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1039129 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1039073 39 : heLysIleLeuArgSerValLeuPheLeuAsnSerLeuLeuLeuPheCysProLeu : 56 ||||||||||||||||| !!|||.!!||||||:!!|||:!!|||||| |||||| heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1039072 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1039019 57 : LeuTyrAlaIleTyrValHisArgGluAspThrAlaMetPheCysLysSerValSe : 75 |||||||||:!::!!|||||||||.!.|||.!!! !! !!...|||:!!!.!!! LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1039018 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1038962 76 : rLeuThrLeuAlaValValHisValProLeuHisSerThrTyrCysPheSerGlnH : 94 !||||||||||||:::|||...::: ......::: |||.!!.!!|||: sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1038961 : CCTGACGCTTGCTctcgtgcaaatatttttccaaactttcgttTGCATCGGTCAAT : 1038905 95 : isAspArgTyrGln >>>> Target Intron 1 >>>> ArgLeuIleGluG : 103 !!|||!.!!:!||| 550 bp !:!|||||||||| yrAspHisPheGln++ ++LysLeuIleGluG 1038904 : ACGATCATTTTCAGgt.........................agAAACTAATCGAAG : 1038328 104 : luMetLysSerCysCysGluLysGlyAsnSerTyrGluArgGlnIlePheGlnArg : 121 ||||||||! !|||||||||! !!.!!!. !!|||||||||.!.:!!||||||||| luMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheGlnArg 1038327 : AAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGACGTCTTCCAACGA : 1038274 122 : TyrValAspLysTyrAlaIleTyrTyrAlaAlaSerAlaValTrpPheTyrTrpSe : 140 ||||||:!!|||:!::::::::::||| ... !!:!! !|||||||||! !! TyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheTyrLeuTh 1038273 : TACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTTACTTAAC : 1038217 141 : rProSerIleIleLeuIleGlyThrPhePheIleSerAspProPheProThrAsnA : 159 ! !!! !|||!!::!!:!!|||!:!.!..!!||||||||||||||||||||||||| rAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPheProThrAsnA 1038216 : AGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACCAACG : 1038160 160 : laGluTyrProPheProValAspPheGluProValArgSerIleIlePheLeuGln : 177 ||! !|||||||||||||||:!!|||||||||:!!|||||||||||||||:!!!!. laValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHis 1038159 : CAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCAC : 1038106 178 : GlnSerLeuValGlyMetGlnCysAlaSerLeuLeuCysThrAsnIleLeuCysAl : 196 ||||||!!!||||||!!:|||||||||:!!! ! ! !!! !|||:!:|||! !|| GlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAl 1038105 : CAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGC : 1038049 197 : aLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuMetThrGluIleCysA : 215 ||||||||||||||||.!!.!!|||||||||||||||||||||||||||:!: ! aLeuLeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgA 1038048 : ACTGTTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGA : 1037992 216 : laValAsnGlyValLysSerLeuIleLysCysValLysLysTyrTyrThrLeuLys : 233 !||||||! !:!!:!!!!!||||||||| !!:!!|||||||||! |||:!!::! snValAsnAspIleGluThrLeuIleLysSerMetLysLysTyrSerThrValArg 1037991 : ATGTCAATGATATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGG : 1037938 234 : Arg : 234 ||| Arg 1037937 : AGG : 1037933 vulgar: gi|350405014|ref|XP_003487292.1| 0 234 . KQ414618.1 1039184 1037932 - 692 M 98 294 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037933 1039184 692 - . gene_id 2 ; sequence gi|350405014|ref|XP_003487292.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1038891 1039184 . - . KQ414618.1 exonerate:protein2genome:local exon 1038891 1039184 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1038889 1038890 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1038341 1038890 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1038341 1038342 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1037933 1038340 . - . KQ414618.1 exonerate:protein2genome:local exon 1037933 1038340 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037933 1039184 692 - . alignment_id 2 ; Query gi|350405014|ref|XP_003487292.1| ; Align 1039185 1 294 ; Align 1038341 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350405014|ref|XP_003487292.1| PREDICTED: odorant receptor 49b-like [Bombus impatiens] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 331 Query range: 267 -> 375 Target range: 1028388 -> 1027906 268 : ArgGlnProPheThrValLysLeuGlnPheValThrValSerIleThrValLeuLe : 286 !:!|||||||||.!!|||||| !||||||:!!||||||||| !|||!.!||||| LysGlnProPheAlaValLysAlaGlnPheLeuThrValSerGlyThrAlaLeuLe 1028388 : AAACAACCGTTCGCTGTGAAAGCTCAGTTTCTTACTGTGAGTGGAACCGCTTTGCT : 1028334 287 : uAlaValPheMetCysAlaTrpProAlaAspAsnLeuIleAspVal >>>> Tar : 302 |! !|||.!!||||||:!! |||||||||:!!|||||||||:!! uGluValLeuMetCysSerLeuProAlaAspHisLeuIleAspMet++ 1028333 : GGAAGTGCTTATGTGTTCACTACCAGCTGACCATTTGATAGATATGgt........ : 1028284 303 : get Intron 1 >>>> SerGluSerThrMetArgThrValTyrGlnSerLysT : 314 82 bp ||||||!:!! !|||!:! !:!!|||:!!||||||| ++SerGluAsnIleMetGlnGlyIleTyrGluSerLysT 1028283 : .................agAGCGAGAACATAATGCAAGGAATATATGAATCAAAAT : 1028168 315 : rpTyrGluGlnProLeuArgIleGlnLysPheIleLeuPheMetMetIleProGln : 332 ||||||||!:! |||:::||||||||| !! !:!!.!!|||:!!! !|||||| rpTyrGluArgSerLeuLysIleGlnLysSerThrValLeuMetLeuThrProGln 1028167 : GGTACGAACGAtctctaaaaattcaaaagtcTACAGTCCTCATGTTGACTCCTCAA : 1028114 333 : SerProValIleLeuArgIleArgCysIleIleProAlaPheSerLeuSerTyrTy : 351 |||||||||! !:!!!:!|||!:!|||:!!||||||!.....||||||::::::|| SerProValThrValLysIleLysCysLeuIleProValLeuSerLeuAsnPheTy 1028113 : TCTCCGGTGACAGTAAAAATCAAGTGCCTCATTCCAGttctttctttgaattttta : 1028057 352 : rCysSer >>>> Target Intron 2 >>>> PheIleThrAsnValLeuSe : 360 ||||||| 76 bp !:!:!!:!!||||||!!!|| rCysSer++ ++TyrValSerAsnValPheSe 1028056 : ctgCTCGgt.........................agTACGTCTCAAATGTGTTCTC : 1027954 361 : rMetPheThrAlaLeuArgValValMetPheGlnAspGluAspGly : 375 |:!:|||||||||||||||:!!||||||.!..!.||||||:::||| rLeuPheThrAlaLeuArgIleValMetIleAspAspGluAsnGly 1027953 : TTTATTTACCGCTTTAAGAATAGTCATGATAGACgatgaaaatgga : 1027907 vulgar: gi|350405014|ref|XP_003487292.1| 267 375 . KQ414618.1 1028388 1027906 - 331 M 34 102 5 0 2 I 0 78 3 0 2 M 52 156 5 0 2 I 0 72 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1027907 1028388 331 - . gene_id 3 ; sequence gi|350405014|ref|XP_003487292.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1028287 1028388 . - . KQ414618.1 exonerate:protein2genome:local exon 1028287 1028388 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1028285 1028286 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1028205 1028286 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1028205 1028206 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028049 1028204 . - . KQ414618.1 exonerate:protein2genome:local exon 1028049 1028204 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1028047 1028048 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1027973 1028048 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1027973 1027974 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1027907 1027972 . - . KQ414618.1 exonerate:protein2genome:local exon 1027907 1027972 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1027907 1028388 331 - . alignment_id 3 ; Query gi|350405014|ref|XP_003487292.1| ; Align 1028389 268 102 ; Align 1028205 302 156 ; Align 1027973 354 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350405014|ref|XP_003487292.1| PREDICTED: odorant receptor 49b-like [Bombus impatiens] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 256 Query range: 233 -> 369 Target range: 1052480 -> 1051865 234 : ArgTyrAlaGluGluValAlaAsnThrAlaArgTyrThrThrLeuIleThrLeuCy : 252 |||||||||:!!||||||!.!:!! ! !||| !! !..!|||! !.!!:!!.. ArgTyrAlaLysGluValValAspGlyPheArgLeuIleValLeuAsnAlaIleAl 1052480 : AGGTACGCCAAAGAAGTGGTTGACGGTTTTCGGCTTATAGTACTCAACGCTATAGC : 1052426 253 : sIleCysGlyIleGluSerValPheAlaGlyIleIlePheIleGly >>>> Tar : 268 .!!: !! !:!:! !..!.!.::!.!!|||! !!!.||| ! aMetSerIleLeuAlaLeuThrLeuSerSerIleThrLeuIleMet++ 1052425 : AATGAGCATTTTGGCTCTTACTCTAAGTAGTATTACATTAATAATGgt........ : 1052376 269 : get Intron 1 >>>> ArgGlnProPheThrValLysLeuGlnPheValThrV : 280 62 bp ..! !|||!!.! !||||||:!!||||||||||||| ++GluIleProLeuIleValLysValGlnPheValThrV 1052375 : .................agGAAATACCGTTAATTGTGAAAGTGCAATTCGTAACTG : 1052280 281 : alSerIleThrValLeuLeuAlaValPheMetCysAlaTrpProAlaAspAsnLeu : 298 |||||.!!||||||||| !! !:!!!:!|||! !|||||| !!|||||| !!:!! alSerPheThrValLeuAlaGluIleTyrMetTyrAlaTrpSerAlaAspTyrMet 1052279 : TAAGCTTCACTGTACTCGCAGAAATTTATATGTACGCATGGTCAGCTGACTACATG : 1052226 299 : IleAspVal >>>> Target Intron 2 >>>> SerGluSerThrMetArg : 307 ! !|||:!! 80 bp |||! !!.!..! !:! LysAspMet++ ++SerAlaLysValSerGln 1052225 : AAAGACATGgt.........................agAGTGCAAAGGTTTCACAA : 1052119 308 : ThrValTyrGlnSerLysTrpTyrGluGlnProLeuArgIleGlnLysPheIleLe : 326 !:!||||||.!.! !! !||||||! !||| !!|||...:::|||||| :::|| SerValTyrAspLeuThrTrpTyrGlyGlnThrLeuGluMetGlnLysAsnValLe 1052118 : AGTGTGTATGATTTAACGTGGTACGGACAAACATtggaaatgcagaaaaatgtatt : 1052062 327 : uPheMetMetIleProGlnSerProValIleLeuArgIleArgCysIleIleProA : 345 |::::::::::!!! !|||..!|||||||||||| !:!!!!!||||||:!:|||! uTyrIleLeuValHisGlnGluProValIleLeuSerValSerCysIleValProG 1052061 : atacatattgGTACACCAAGAACCGGTAATTCTGTCAGTTAGTTGCATCGTGCCGG : 1052005 346 : laPheSerLeuSerTyrTyrCysSer >>>> Target Intron 3 >>>> P : 354 !.!!|||||| !!|||||||||||| 65 bp ! luLeuSerLeuArgTyrTyrCysSer++ ++T 1052004 : AGCTTTCTCTTCGTTATTATTGCTCGgt.........................agT : 1051913 355 : heIleThrAsnValLeuSerMetPheThrAlaLeuArgValValMet : 369 :!:!::!!|||!.!!!!|||:!:|||||||||||||||||||||:!! yrLeuSerAsnAlaPheSerValPheThrAlaLeuArgValValLeu 1051912 : ACCTGTCAAATGCGTTCTCGGTTTTCACCGCTTTGCGCGTCGTGCTG : 1051866 vulgar: gi|350405014|ref|XP_003487292.1| 233 369 . KQ414618.1 1052480 1051865 - 256 M 34 102 5 0 2 I 0 58 3 0 2 M 34 102 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 61 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1051866 1052480 256 - . gene_id 4 ; sequence gi|350405014|ref|XP_003487292.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1052379 1052480 . - . KQ414618.1 exonerate:protein2genome:local exon 1052379 1052480 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052377 1052378 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052317 1052378 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052317 1052318 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052215 1052316 . - . KQ414618.1 exonerate:protein2genome:local exon 1052215 1052316 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052213 1052214 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052135 1052214 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1052135 1052136 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051979 1052134 . - . KQ414618.1 exonerate:protein2genome:local exon 1051979 1052134 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1051977 1051978 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1051914 1051978 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1051914 1051915 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051866 1051913 . - . KQ414618.1 exonerate:protein2genome:local exon 1051866 1051913 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1051866 1052480 256 - . alignment_id 4 ; Query gi|350405014|ref|XP_003487292.1| ; Align 1052481 234 102 ; Align 1052317 268 102 ; Align 1052135 302 156 ; Align 1051914 354 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350405014|ref|XP_003487292.1| PREDICTED: odorant receptor 49b-like [Bombus impatiens] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 217 Query range: 92 -> 234 Target range: 1058158 -> 1057732 93 : GlnHisAspArgTyrGlnArgLeuIleGluGluMetLysSerCysCysGluLysGl : 111 :!!:!!:!! !! ||| !||| ! !!:|||:!!!:!! !|||..! ! !. LysAsnAsnAlaSerGlnValLeuTyrPheAspMetGluAsnPheCysArgTyrAl 1058158 : AAAAACAATGCTTCGCAGGTATTGTACTTCGACATGGAGAATTTCTGCAGATACGC : 1058104 112 : yAsnSerTyrGluArgGlnIlePheGlnArgTyrValAspLysTyrAlaIleTyrT : 130 !!.!||| |||::: :::.!.|||||||||||||||!:!||| ! !!:!: aThrSerLysGluLysValValLeuGlnArgTyrValAspArgTyrLysTyrPheH 1058103 : CACCtcgaaggaaaaagttgtcCTGCAACGATACGTGGACAGATACAAATACTTTC : 1058047 131 : yrAlaAlaSerAlaValTrpPheTyrTrpSerProSerIleIleLeuIleGlyThr : 148 !!!.! !! ! !:!!|||! !!:! !!! !!! !.!!:!!:!!! !||| !! isGlyIleTyrIleLeuTrpCysPheLeuThrThrIlePheValIleSerGlyPro 1058046 : ATGGGATTTATATATTATGGTGCTTCCTCACGACCATCTTCGTCATAAGTGGTCCA : 1057993 149 : PhePheIleSerAspProPheProThrAsnAlaGluTyrProPheProValAspPh : 167 !!.!:! ! !!.!. !!|||||||||:!!||| !|||||||||! !|||!!: LeuTyrSerProGlnThrPheProThrHisAlaIleTyrProPheGlnValGluHi 1057992 : TTGTACTCACCACAGACGTTCCCCACTCATGCGATATATCCTTTCCAAGTGGAACA : 1057936 168 : eGluProValArgSerIleIlePheLeuGlnGlnSerLeuValGlyMetGlnCysA : 186 ! !! ! !!!:: :::|||:::......|||||||||||||||.!.|||...: sThrLeuPheLysIleValIleTyrPheHisGlnSerLeuValGlyPheGlnAlaS 1057935 : TACACTGTTCAagattgttatttatttccatCAGTCGTTAGTTGGTTTTCAGGCGT : 1057879 187 : laSerLeuLeuCysThrAsnIleLeuCysAlaLeuLeuLeuLeuPheAlaAlaAla : 204 !!:!! !:!!..!! !:!!! !! ! !||||||||||||! !!:!||||||||| erAlaGlyMetAlaIleAspThrGlnIleAlaLeuLeuLeuArgTyrAlaAlaAla 1057878 : CCGCTGGTATGGCCATCGACACTCAAATTGCTCTTCTTCTGCGATACGCGGCTGCC : 1057825 205 : ArgPheGluIleLeuMetThrGluIleCysAlaValAsnGlyValLysSerLeuIl : 223 |||||||||:!!||| !.!|||!!: ! !!.!||| ! ! ..!!!!! ArgPheGluLeuLeuGlyAsnGluMetArgAsnAlaAsnThrHisCysGluPheAs 1057824 : AGGTTCGAGCTATTGGGAAACGAGATGCGAAATGCAAATACTCACTGTGAATTCAA : 1057768 224 : eLysCysValLysLysTyrTyrThrLeuLysArg : 234 ! |||:!!:!!|||:!! ! !||| ||| nAlaCysIleGluLysHisSerGluLeuLeuArg 1057767 : TGCCTGCATAGAGAAGCACAGTGAACTTCTCAGg : 1057733 vulgar: gi|350405014|ref|XP_003487292.1| 92 234 . KQ414618.1 1058158 1057732 - 217 M 142 426 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057733 1058158 217 - . gene_id 5 ; sequence gi|350405014|ref|XP_003487292.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1057733 1058158 . - . KQ414618.1 exonerate:protein2genome:local exon 1057733 1058158 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057733 1058158 217 - . alignment_id 5 ; Query gi|350405014|ref|XP_003487292.1| ; Align 1058159 93 426 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350405014|ref|XP_003487292.1| PREDICTED: odorant receptor 49b-like [Bombus impatiens] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 170 Query range: 301 -> 353 Target range: 1035766 -> 1035610 302 : SerGluSerThrMetArgThrValTyrGlnSerLysTrpTyrGluGlnProLeuAr : 320 ||||||!:!! !|||!:! !:!!|||:!!|||||||||||||||!:! |||:: SerGluAsnIleMetGlnGlyIleTyrGluSerLysTrpTyrGluArgSerLeuLy 1035766 : AGCGAGAACATAATGCAAGGAATATATGAATCGAAATGGTACGAACGAtctctaaa : 1035712 321 : gIleGlnLysPheIleLeuPheMetMetIleProGlnSerProValIleLeuArgI : 339 :||||||||| !! !:!!.!!|||:!!! !|||||||||||||||! !:!!!:!| sIleGlnLysSerThrValLeuMetLeuThrProGlnSerProValThrValLysI 1035711 : aattcaaaagtcTACAGTCCTCATGTTGACTCCTCAATCTCCGGTGACAGTAAAAA : 1035655 340 : leArgCysIleIleProAlaPheSerLeuSerTyrTyrCysSer : 353 ||!:!|||:!!||||||!.....||||||::::::||||||||| leLysCysLeuIleProValLeuSerLeuAsnPheTyrCysSer 1035654 : TCAAGTGCCTCATTCCAGttctttctttgaatttttactgCTCG : 1035611 vulgar: gi|350405014|ref|XP_003487292.1| 301 353 . KQ414618.1 1035766 1035610 - 170 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1035611 1035766 170 - . gene_id 6 ; sequence gi|350405014|ref|XP_003487292.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1035611 1035766 . - . KQ414618.1 exonerate:protein2genome:local exon 1035611 1035766 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1035611 1035766 170 - . alignment_id 6 ; Query gi|350405014|ref|XP_003487292.1| ; Align 1035767 302 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 335 -> 394 Target range: 3178740 -> 3178917 336 : GluGlnCysMetLysValGlyGluIleValTyrMetThrAsnTrpTyrIleLeuPr : 354 ...||| !! |||||||||||| !:!!||| !! !:!!||| !||||| SerGlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuPr 3178741 : TCCCAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCC : 3178795 355 : oArgLysArgIleLeuGluLeuIleLeuIleIleAlaArgSerSerValValIleG : 373 |! ! ! ! !! !!!:|||:!:||||||!!:|||||||||!.! ! !:!!: oThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValL 3178796 : CACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTA : 3178852 374 : luIleThrAlaGlyLysLeuIleHisMetSerIleHisThrPheGlyAspValMet : 391 !!!!:|||::!||| ! :!!:!! !:!:||| !.!.:!!||| !..!|||! ysMetThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerValSer 3178853 : AAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTTAGT : 3178906 392 : ArgLeuAla : 394 |||:!!:!! ArgIleSer 3178907 : AGAATTTCC : 3178917 vulgar: gi|350396509|ref|XP_003484577.1| 335 394 . KQ414646.1 3178740 3178917 + 100 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178741 3178917 100 + . gene_id 1 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178741 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178741 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178741 3178917 100 + . alignment_id 1 ; Query gi|350396509|ref|XP_003484577.1| ; Align 3178741 336 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928688|ref|XP_012248811.1| PREDICTED: odorant receptor Or1-like, partial [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 212 Query range: 13 -> 144 Target range: 3160008 -> 3160401 14 : AsnAsnGlyGluGlyGluIleHisAlaArgTyrAspAsnLeuIleGluLysValAl : 32 .........:::|||:::::::::...! ! ! ::!! ! !..!|||:!!:! LysThrAsnAspGlyLysLeuAsnGlyMetLysIleSerCysCysArgLysLeuSe 3160009 : aaaacaaacgatggaaaattgaatggaATGAAAATATCCTGTTGTAGAAAGCTCTC : 3160063 33 : aValGlyTyrThrIleGlnIleThrPheCysValLeuSerLeuLeuGlyMetAlaL : 51 !:!!!.!||||||:!! ! !..!.!. !!!.! !.!!:!!! ! !:!!:!! rMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValTrpMetLeuSerA 3160064 : GATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTATGGATGTTGTCGG : 3160120 52 : euIleCysAspPheLysLeuLysLysLeuMetPheProGlyTrpPheProPheAsp : 69 !!!: ! |||!:!:!!!:!:!!||| .!!! !! !|||!!.||||||||| laMetThrAlaPheArgIleArgGluLeuProLeuArgValTrpLeuProPheAsp 3160121 : CCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGGTTACCTTTCGAT : 3160174 70 : IleThrSerSerTrpLeuAlaPheSerMetThrPheLeuTyrGlnPheLeuGlyLe : 88 !! !:!!!!!! ! ! !||||||:!:|||!:! !|||||||||:!! !|| TyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGlnPheValThrLe 3160175 : TATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAGTTTGTAACTCT : 3160231 89 : uValIleIleCysIleGlyValCysIlePheAspThrLeuPheValGlyLeuLeuL : 107 |:!!.!!||| !! !!.!:!! ! !|||!.!|||||| !|||||||||: uIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheSerGlyLeuLeuI 3160232 : GATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCAGCGGACTGTTGA : 3160288 108 : euHisIleCysCysGlnLeuGluMetLeuValTyrArgLeuHisAsnIleGluGly : 125 !!||||||! !||||||!!!|||!!:||| !:!!|||||| ! !:!|||:!! ! leHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysSerIleLysPro 3160289 : TCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGAGCATTAAACCT : 3160342 126 : HisGluIleGlnSerLeuLysHisCysValTrpHisHisAsnLysIlePheArgPh : 144 !!..! ! ||| !|||!!.|||!.!!::|||||| !!:::|||!:!!:!|| AspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrArgIleTyrLysPh 3160343 : GACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGCATATACAAGTT : 3160399 145 : e : 144 | e 3160400 : T : 3160401 vulgar: gi|815928688|ref|XP_012248811.1| 13 144 . KQ414646.1 3160008 3160401 + 212 M 131 393 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160009 3160401 212 + . gene_id 1 ; sequence gi|815928688|ref|XP_012248811.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160009 3160401 . + . KQ414646.1 exonerate:protein2genome:local exon 3160009 3160401 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160009 3160401 212 + . alignment_id 1 ; Query gi|815928688|ref|XP_012248811.1| ; Align 3160009 14 393 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928688|ref|XP_012248811.1| PREDICTED: odorant receptor Or1-like, partial [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 26 -> 151 Target range: 3180041 -> 3180413 27 : LeuIleGluLysValAlaValGlyTyrThrIleGlnIleThrPheCysValLeuSe : 45 ||| !..!||| !|||||| !!||||||!!: !:!! !.!.! ||| !|| LeuAspArgLysAsnAlaValArgTyrThrMetValValGluMetSerValAlaSe 3180042 : CTCGACAGGAAAAACGCTGTCAGATACACAATGGTAGTCGAGATGTCGGTCGCCTC : 3180096 46 : rLeuLeuGlyMetAlaLeuIleCysAspPheLysLeuLysLysLeuMetPheProG : 64 | !:!! !! :!!|||:!: !:!!|||:!!! ! !:!|||! !:! !| rThrIleLeuAsnSerLeuValThrAsnPheGlnHisGlyArgLeuThrTyrArgG 3180097 : GACTATTTTAAACTCGTTAGTGACCAACTTTCAACACGGCAGACTAACCTACAGAG : 3180153 65 : lyTrpPheProPheAspIleThrSerSerTrpLeuAlaPheSerMetThrPheLeu : 82 |||||||||||!:!||| !|||!!!:!! ||| ||| !!:!!|||!:! ! lyTrpPheProTyrAspTyrThrThrAlaValLeu---PheProLeuThrTyrAla 3180154 : GCTGGTTCCCTTACGATTACACGACCGCCGTACTT---TTTCCATTGACATACGCT : 3180204 83 : TyrGlnPheLeuGlyLeuValIleIleCysIleGlyValCysIlePheAspThrLe : 101 |||.!.||| !!:!!:!!:!! !! ! ! ! ! ! ! |||! !|| LeuGlnLeuLeuCysValLeuValTyrSerTrpIleHisValSerValAspIleLe 3180205 : CTGCAGCTATTATGCGTGCTCGTATATTCCTGGATCCACGTTTCAGTGGATATTCT : 3180261 102 : uPheValGlyLeuLeuLeuHisIleCysCysGlnLeuGluMetLeuValTyrArgL : 120 |||| !!|||||||||:!!!!.:!:|||||||||!!!!!::::||| |||. uPhePheGlyLeuLeuMetGlnLeuCysCysGlnPheAspIleLeuPheSerArgP 3180262 : CTTCTTCGGACTGTTGATGCAACTGTGCTGTCAATTCGAcattctcttctctcgtt : 3180318 121 : euHisAsnIleGluGlyHisGluIleGlnSerLeuLysHisCysValTrpHisHis : 138 .. !!:!||| !..!.!..!.! !|||::!...|||:!! ! |||||| heSerSerIleThrSerGluAsnLysGlyValLeuArgArgCysIleArgHisHis 3180319 : tcAGTAGCATAACGTCGGAGAACAAGGGTGTTTTACGAAGATGCATTCGTCATCAC : 3180372 139 : AsnLysIlePheArgPheAlaAspMetValAsnAsnPhe : 151 :!!!:!|||!:!|||! !||| !:!! ! ||| AspArgIleTyrArg***PheAspGluIleAlaValPhe 3180373 : GACAGAATTTACCGGTAATTCGACGAGATCGCTGTGTTT : 3180413 vulgar: gi|815928688|ref|XP_012248811.1| 26 151 . KQ414646.1 3180041 3180413 + 183 M 49 147 G 1 0 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180042 3180413 183 + . gene_id 2 ; sequence gi|815928688|ref|XP_012248811.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180042 3180413 . + . KQ414646.1 exonerate:protein2genome:local exon 3180042 3180413 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3180042 3180413 183 + . alignment_id 2 ; Query gi|815928688|ref|XP_012248811.1| ; Align 3180042 27 147 ; Align 3180189 77 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928688|ref|XP_012248811.1| PREDICTED: odorant receptor Or1-like, partial [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 49 -> 144 Target range: 3174326 -> 3174612 50 : AlaLeuIleCysAspPheLysLeuLysLysLeuMetPheProGlyTrpPhe-ProP : 68 :!!:!!.!! ! !||||||:!!!:!:!!||| .!!! !||||||!!.#|||| SerIlePheThrAlaPheLysIleArgGluLeuProLeuArgGlyTrpLeu#ProP 3174327 : TCGATCTTCACGGCTTTTAAGATCAGAGAGTTACCCCTTCGAGGATGGTTAACCTT : 3174382 69 : heAspIleThrSerSerTrpLeuAlaPheSerMetThrPheLeuTyrGlnPheLeu : 86 ||||| !! !:!!!!!! ! ! !||||||:!:|||!:! !|||||||||:!! heAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGlnPheVal 3174383 : TCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAGTTTGTA : 3174436 87 : GlyLeuValIleIleCysIleGlyValCysIlePheAspThrLeuPheValGlyLe : 105 !|||:!!.!!:!! ! !!.!:!! ! !! !|||!.!|||||| !||||| ThrLeuIlePheLeuThrSerAlaIleIleGlySerAspAsnLeuPheSerGlyLe 3174437 : ACTCTGATATTCCTTACTTCTGCTATTATCGGTTCTGACAATCTATTCAGCGGACT : 3174493 106 : uLeuLeuHisIleCysCysGlnLeuGluMetLeuValTyrArgLeuHisAsnIleG : 124 ||||:!!||||||! !||||||!!!|||!!:||| !:!!|||||| ! !:!|||: uLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysSerIleL 3174494 : GTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGAGCATTA : 3174550 125 : luGlyHisGluIleGlnSerLeuLysHisCysValTrpHisHisAsnLysIlePhe : 142 !! ! !!..! ! ||| !|||!!.|||!.!!::|||||| !!:::|||!:! ysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrArgIleTyr 3174551 : AACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGCATATAC : 3174604 143 : ArgPhe : 144 !:!||| LysPhe 3174605 : AAGTTT : 3174612 vulgar: gi|815928688|ref|XP_012248811.1| 49 144 . KQ414646.1 3174326 3174612 + 175 M 17 51 F 0 1 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174327 3174612 175 + . gene_id 3 ; sequence gi|815928688|ref|XP_012248811.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174327 3174612 . + . KQ414646.1 exonerate:protein2genome:local exon 3174327 3174612 . + . insertions 0 ; deletions 0 ; frameshifts 1 KQ414646.1 exonerate:protein2genome:local similarity 3174327 3174612 175 + . alignment_id 3 ; Query gi|815928688|ref|XP_012248811.1| ; Align 3174327 50 51 ; Align 3174379 67 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928688|ref|XP_012248811.1| PREDICTED: odorant receptor Or1-like, partial [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 138 -> 210 Target range: 3178372 -> 3178591 139 : AsnLysIlePheArgPheAlaAspMetValAsnAsnPhePheAsnLysMetMetPh : 157 ||| ||| ||||||.!!.!.! !||||||!.! ! |||.!. ! |||!!:|| AsnPheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePh 3178373 : aatttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTT : 3178427 158 : eValGlnPheMetAlaSerAlaValAlaValCysPheThrLeuTyrLeuLeuThrA : 176 |:!!|||||| !|||:!!..!!.!:!!|||!!.!:!:!!||| !:!!:!! eLeuGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerT 3178428 : CCTGCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGA : 3178484 177 : spValGlnAspThrAlaGlnLeuIleGlyTrp<->SerThrTyrMetPheAlaGly : 193 :!!.!. !::!..! !.!!! !||| :!!:!!|||:!:! !..! ! hrIleAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMet 3178485 : CGATTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATG : 3178538 194 : IleCysGlnThrPhePhePheCysTrpPheGlyAsnAlaAlaLysValLys : 210 :!! |||..!!:!!!.!:!|||||||||||||||! !!.!! !:!!||| LeuThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys 3178539 : CTCACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: gi|815928688|ref|XP_012248811.1| 138 210 . KQ414646.1 3178372 3178591 + 123 M 48 144 G 0 3 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178373 3178591 123 + . gene_id 4 ; sequence gi|815928688|ref|XP_012248811.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178373 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178373 3178591 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178373 3178591 123 + . alignment_id 4 ; Query gi|815928688|ref|XP_012248811.1| ; Align 3178373 139 144 ; Align 3178520 187 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 333 -> 388 Target range: 3178740 -> 3178905 334 : GluGlnSerLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuPr : 352 ...||||||:!!||||||||||||!.!:!!||| !! !:!!||| ||||| SerGlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuPr 3178741 : TCCCAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCC : 3178795 353 : oAspLysThrIleLeuAspLeuIleLeuIleIleAlaArgSerGlyValValValG : 371 | ! ! ! !! !||||||:!:||||||!!:||||||||| ! ! !|||: oThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValL 3178796 : CACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTA : 3178852 372 : lnIleThrAlaGlyLysMetValHisMetSerValTyrThrPheGlyAspVal : 388 !!!!:|||::!||| ! :!:||| !:!:|||!.! ! :!!||| !..!||| ysMetThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerVal 3178853 : AAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTT : 3178905 vulgar: gi|350396511|ref|XP_003484578.1| 333 388 . KQ414646.1 3178740 3178905 + 106 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178741 3178905 106 + . gene_id 1 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178741 3178905 . + . KQ414646.1 exonerate:protein2genome:local exon 3178741 3178905 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178741 3178905 106 + . alignment_id 1 ; Query gi|350396511|ref|XP_003484578.1| ; Align 3178741 334 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928873|ref|XP_012248903.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 115 -> 178 Target range: 887588 -> 887777 116 : AsnGluThrArgGlnArgHisGlnMetPheArgLeuThrTyrPheLeuAspGluAsnA : 135 |||..!|||..!! |||!!. :!:!:!! !:!! !||| !:!!|||......: AsnArgThrGluProArgGlnThrLeuTyrProValGluTyrHisIleAspSerGluL 887589 : AACCGGACCGAACCCAGACAGACTCTATACCCAGTGGAGTACCACATCgacagtgaaa : 887646 136 : rgTyrPheTyrProIleTyrPheHisSerLeuTrpCysSerPheValThrValMetIl : 154 ::||||||||| ||| !|||!!!! ! ! !!! ! :!! !:!!:!: ysTyrPheTyrLeuIleThrAlaHisCysTyrAlaSerThrValLeuLeuLeuLeuGl 887647 : aatatttttacctgATTACAGCTCATTGTTACGCCTCGACAGTACTTCTTCTGCTTCA : 887703 155 : eAlaValThrIleAspSerLeuTyrIleGlnIleValHisHisAspCysAlaIlePhe : 173 !.!!|||..! !|||!!!:!!|||||| :!:|||!!.|||! !||||||:!!||| nThrValValHisAspThrMetTyrIleValLeuValGlnHisGlyCysAlaLeuPhe 887704 : AACTGTCGTACACGACACAATGTACATTGTTCTGGTCCAACATGGCTGCGCTTTATTC : 887760 174 : AlaIleCysGlyGln : 178 |||:!! |||||| AlaValThrGlyGln 887761 : GCAGTTACGGGGCAA : 887777 vulgar: gi|815928873|ref|XP_012248903.1| 115 178 . KQ414735.1 887588 887777 + 122 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 887589 887777 122 + . gene_id 1 ; sequence gi|815928873|ref|XP_012248903.1| ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 887589 887777 . + . KQ414735.1 exonerate:protein2genome:local exon 887589 887777 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 887589 887777 122 + . alignment_id 1 ; Query gi|815928873|ref|XP_012248903.1| ; Align 887589 116 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928873|ref|XP_012248903.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 141 Query range: 91 -> 177 Target range: 14151 -> 13893 92 : ValLeuSerCysMetSerGlyPheIleValIleProLeuTyrProAlaPheLeuAspIle : 111 !.!:!! !|||:!:! ! !|||:!:..!! |||:!! ||| !.!!||||||||| AlaIleValCysValIleLeuPheValThrThrProValThrProHisIleLeuAspIle 14151 : GCGATCGTTTGTGTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATTTTGGACATT : 14094 112 : IleIleProLeuAsnGluThrArgGlnArgHisGlnMetPheArgLeuThrTyrPheLeu : 131 :!!:!!||| !||||||:!!|||.!. ! ! !!:!:!! ! ! !|||||| ! LeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThr 14093 : TTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACC : 14034 132 : AspGluAsnArgTyrPheTyrProIleTyrPheHisSerLeuTrpCysSerPheValThr : 151 ||||||:!!!:!||| ! !||| ! |||! ! !! ! !.!!|||..! AspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValVal 14033 : GACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTG : 13974 152 : ValMetIleAlaValThrIleAspSerLeuTyrIleGlnIleValHisHisAspCysAla : 171 !! :!: !|||.!! !|||!!! !|||||| ! :!!|||!!.|||! !|||!.! PheTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGly 13973 : TTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGA : 13914 172 : IlePheAlaIleCysGly : 177 :!:!!.|||:!:! !||| LeuLeuAlaValSerGly 13913 : TTGTTGGCCGTGTCCGGg : 13894 vulgar: gi|815928873|ref|XP_012248903.1| 91 177 . KQ414772.1 14151 13893 - 141 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13894 14151 141 - . gene_id 1 ; sequence gi|815928873|ref|XP_012248903.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13894 14151 . - . KQ414772.1 exonerate:protein2genome:local exon 13894 14151 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13894 14151 141 - . alignment_id 1 ; Query gi|815928873|ref|XP_012248903.1| ; Align 14152 92 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928873|ref|XP_012248903.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 98 -> 175 Target range: 20556 -> 20325 99 : PheIleValIleProLeuTyrProAlaPheLeuAspIleIleIleProLeuAsnGluThr : 118 |||:!! !:!:|||!!! ||| !.!!||||||||| ! |||||||||:!!||| PheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsnLysThr 20556 : TTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAACAAAACG : 20499 119 : ArgGlnArgHisGlnMetPheArgLeuThrTyrPheLeuAspGluAsnArgTyrPheTyr : 138 |||:!!||| :!:!:!! ! ! !|||!:::!!||| .!.!:!|||!:! ArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMet 20498 : AGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATG : 20439 139 : ProIleTyrPheHisSerLeuTrpCysSerPheValThrValMetIleAlaValThrIle : 158 !!!: .!.|||! !:!!!:: !.!!:!!..! !:!:||| ! !.!! ! IleMetIleIleHisIleMetPheValValIleMetValCysValIlePheCysAlaCys 20438 : ATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGTGCTTGC : 20379 159 : AspSerLeuTyrIleGlnIleValHisHisAspCysAlaIlePheAlaIle : 175 |||! ! !|||:!: ! !|||!!.|||! |||!.!:!!!!.|||:!! AspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaVal 20378 : GACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: gi|815928873|ref|XP_012248903.1| 98 175 . KQ414772.1 20556 20325 - 127 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20556 127 - . gene_id 2 ; sequence gi|815928873|ref|XP_012248903.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20556 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20556 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20326 20556 127 - . alignment_id 2 ; Query gi|815928873|ref|XP_012248903.1| ; Align 20557 99 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396456|ref|XP_003484556.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 341 -> 397 Target range: 1345597 -> 1345843 342 : AsnTrpTyrArgPheProMetLysLysAlaArgAsnLeuIleLeuIleIleIleMe : 360 ||||||||| !!!.||| ||| ! .!!|||:::||||||!!! !||| ! AsnTrpTyrAspLeuProAspLysTyrThrArgSerLeuIlePheCysIleAlaAr 1345598 : AATTGGTACGATTTACCAGATAAATACACGCGATCGTTAATATTTTGCATCGCTCG : 1345652 361 : tSerAsnTyrProIleLysLeuThrAlaGlyLysIleValAspIleSerLeuAlaT : 379 |||.!. ! ||| ! |||||||||||||||.!! !! .!!||||||! !| gSerGlnLysProSerTyrLeuThrAlaGlyLysPheTyrValPheSerLeuGluT 1345653 : CTCTCAAAAGCCGTCGTACCTAACAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAA : 1345709 380 : hrPheThrAsp >>>> Target Intron 1 >>>> IleIleLysAlaSerV : 388 ||||| ! ! 78 bp |||:!!|||||||||: hrPheGlyIle++ ++IleValLysAlaSerM 1345710 : CATTCGGCATCgt.........................agATAGTAAAAGCGTCGA : 1345814 389 : alGlyTyrLeuAsnValLeuArgLysVal : 397 !!!.!||||||::!||||||!:!!..:!! etAlaTyrLeuSerValLeuLysSerIle 1345815 : TGGCCTATCTTTCCGTTCTGAAAAGCATT : 1345843 vulgar: gi|350396456|ref|XP_003484556.1| 341 397 . KQ414782.1 1345597 1345843 + 118 M 41 123 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345598 1345843 118 + . gene_id 1 ; sequence gi|350396456|ref|XP_003484556.1| ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345598 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345598 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345843 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345843 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345598 1345843 118 + . alignment_id 1 ; Query gi|350396456|ref|XP_003484556.1| ; Align 1345598 342 123 ; Align 1345799 383 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928873|ref|XP_012248903.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 149 Query range: 94 -> 177 Target range: 26237 -> 25988 95 : CysMetSerGlyPheIleValIleProLeuTyrProAlaPheLeuAspIleIleIlePro : 114 ||| :!! !|||!!: !:!:|||!!! !! !!.!!|||||||||:!!!!:||| CysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetPro 26237 : TGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCG : 26180 115 : LeuAsnGluThrArgGlnArgHisGlnMetPheArgLeuThrTyrPheLeuAspGluAsn : 134 ||||||||||||||| !||| :!:!:!! ! ! !||||||:!!||||||:!! LeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAsp 26179 : TTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGAC : 26120 135 : ArgTyrPheTyrProIleTyrPheHisSerLeuTrpCysSerPheValThrValMetIle : 154 !:!||| !||| !||| |||! !! ! ! ! :!! !:!! :!! LysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerVal 26119 : AAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTT : 26060 155 : AlaValThrIleAspSerLeuTyrIleGlnIleValHisHisAspCysAlaIlePheAla : 174 ! !.!! !|||:!! !|||:!: ! !|||!!.|||! !|||!.!:!:!!.||| PheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAla 26059 : TTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCC : 26000 175 : IleCysGly : 177 |||...||| IleAlaGly 25999 : ATTGCAGGG : 25989 vulgar: gi|815928873|ref|XP_012248903.1| 94 177 . LHQN01017803.1 26237 25988 - 149 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26237 149 - . gene_id 1 ; sequence gi|815928873|ref|XP_012248903.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26237 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26237 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26237 149 - . alignment_id 1 ; Query gi|815928873|ref|XP_012248903.1| ; Align 26238 95 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928873|ref|XP_012248903.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 91 -> 177 Target range: 14188 -> 13930 92 : ValLeuSerCysMetSerGlyPheIleValIleProLeuTyrProAlaPheLeuAspIle : 111 !.!:!! !|||:!:! ! !|||:!: !! |||:!! ||| !.!!||||||||| AlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIle 14188 : GCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATT : 14131 112 : IleIleProLeuAsnGluThrArgGlnArgHisGlnMetPheArgLeuThrTyrPheLeu : 131 :!!:!!||| !||||||:!!|||.!. ! ! !!:!:!! ! ! !|||||| ! LeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThr 14130 : TTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTATCCGGCCTATTATTTCACC : 14071 132 : AspGluAsnArgTyrPheTyrProIleTyrPheHisSerLeuTrpCysSerPheValThr : 151 ||||||:!!!:!||| ! !||| ! |||! ! !! ! !.!!|||..! AspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValVal 14070 : GACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTG : 14011 152 : ValMetIleAlaValThrIleAspSerLeuTyrIleGlnIleValHisHisAspCysAla : 171 !! :!: !|||.!! !|||!!! !|||||| ! :!!|||!!.|||! !|||!.! PheTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGly 14010 : TTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGA : 13951 172 : IlePheAlaIleCysGly : 177 :!:!!.|||:!:! !||| LeuLeuAlaValSerGly 13950 : TTGTTGGCCGTGTCCGGg : 13931 vulgar: gi|815928873|ref|XP_012248903.1| 91 177 . LHQN01017803.1 14188 13930 - 139 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13931 14188 139 - . gene_id 2 ; sequence gi|815928873|ref|XP_012248903.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13931 14188 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13931 14188 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13931 14188 139 - . alignment_id 2 ; Query gi|815928873|ref|XP_012248903.1| ; Align 14189 92 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 340 -> 393 Target range: 39974 -> 40133 341 : ValGlyGluIleValTyrMetThrAsnTrpTyrIleLeuProArgLysArgIleLeuGlu : 360 :!!|||:!! !!.!||| !||||||||| !||||||! !|||!.! !:!!..! IleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHisAlaValSer 39975 : ATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCATGCTGTTTCG : 40032 361 : LeuIleLeuIleIleAlaArgSerSerValValIleGluIleThrAlaGlyLysLeuIle : 380 |||:!!:!!:!:|||..!|||:!!..!||| !.!!:!!|||||||||||||||!!!! ! LeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGlyLysPheSer 40033 : TTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGT : 40092 381 : HisMetSerIleHisThrPheGlyAspValMetArgLeu : 393 ! !.!.|||:!!.!. !|||..!! !|||! |||:!! ProPheSerLeuGluLeuPheAsnAlaValSerArgIle 40093 : CCCTTTTCTCTCGAGCTGTTTAACGCTGTGAGTCGAATT : 40133 vulgar: gi|350396509|ref|XP_003484577.1| 340 393 . KQ414804.1 39974 40133 + 112 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39975 40133 112 + . gene_id 1 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39975 40133 . + . KQ414804.1 exonerate:protein2genome:local exon 39975 40133 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39975 40133 112 + . alignment_id 1 ; Query gi|350396509|ref|XP_003484577.1| ; Align 39975 341 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 326 -> 388 Target range: 39938 -> 40124 327 : TyrIleGlyGluIleLeuThrGluGlnSerLysLysValGlyGluValValTyrMetThr : 346 |||||| :::||| ... |||! !:!!|||:!! !!.!||| ! TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 347 : AsnTrpTyrTyrLeuProAspLysThrIleLeuAspLeuIleLeuIleIleAlaArgSer : 366 ||||||||| !!|||||| ||| ! !:!!...|||:!!:!!:!:|||..!|||:!! AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 367 : GlyValValValGlnIleThrAlaGlyLysMetValHisMetSerValTyrThrPheGly : 386 !||| ! !!||||||||||||||||||.!. !! !.!.|||:!! ! !|||..! GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsn 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAAC : 40116 387 : AspVal : 388 ! !||| AlaVal 40117 : GCTGTG : 40124 vulgar: gi|350396511|ref|XP_003484578.1| 326 388 . KQ414804.1 39938 40124 + 108 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40124 108 + . gene_id 1 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39939 40124 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40124 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40124 108 + . alignment_id 1 ; Query gi|350396511|ref|XP_003484578.1| ; Align 39939 327 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928688|ref|XP_012248811.1| PREDICTED: odorant receptor Or1-like, partial [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 53 -> 129 Target range: 36746 -> 36971 54 : AspPheLysLeuLysLysLeuMetPheProGlyTrpPheProPheAspIleThrSerSer : 73 !!:|||!!.:!! ! !|||:!:.!!|||!.! ||||||!:!||| |||!:!!.! GluPheAsnValGlyGlyLeuLeuIleProAlaThrPheProTyrAsp---ThrAsnLys 36747 : GAGTTCAACGTAGGAGGACTACTTATCCCGGCCACATTTCCATACGAC---ACGAATAAA : 36801 74 : TrpLeuAlaPheSerMetThrPheLeuTyrGlnPheLeuGlyLeuValIleIleCysIle : 93 ! ! ! !!:!..!!!:|||!::||| ||||||:!!||| !|||:!:! !...||| SerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrValLeuSerAlaIle 36802 : AGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATA : 36861 94 : GlyValCysIlePheAspThrLeuPheValGlyLeuLeuLeuHisIleCysCysGlnLeu : 113 !! !! ! !|||||||||!!! !!!.!! !|||:!!|||||||||||| !!|||||| CysTyrSerCysPheAspThrPheValAlaValLeuValLeuHisIleCysGlyGlnLeu 36862 : TGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTA : 36921 114 : GluMetLeuValTyrArgLeuHisAsnIleGluGlyHisGluIleGln : 129 :!:||| ! ! !|||.!.|||:!!! ..! !|||:!! ThrValLeuArgIleAlaLeuGluAsnLeuAlaAsnThrThrIleLys 36922 : ACTGTTCTCCGCATTGCCCTCGAGAATCTTGCTAACACGACAATAAAA : 36971 vulgar: gi|815928688|ref|XP_012248811.1| 53 129 . KQ414804.1 36746 36971 + 109 M 16 48 G 1 0 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36747 36971 109 + . gene_id 1 ; sequence gi|815928688|ref|XP_012248811.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36747 36971 . + . KQ414804.1 exonerate:protein2genome:local exon 36747 36971 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 36747 36971 109 + . alignment_id 1 ; Query gi|815928688|ref|XP_012248811.1| ; Align 36747 54 48 ; Align 36795 71 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928873|ref|XP_012248903.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 106 -> 177 Target range: 485719 -> 485932 107 : AlaPheLeuAspIleIleIleProLeuAsnGluThrArgGlnArgHisGlnMetPheA : 126 ::!.!!|||||||||:!:|||||||||||| ! ||||||! !||| .!.! SerIleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleA 485720 : AGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAA : 485777 127 : rgLeuThrTyrPheLeuAspGluAsnArgTyrPheTyrProIleTyrPheHisSerLe : 145 .!! ! !:!!|||:!!|||:!!.!.!:!||||||||||||||| ||| !:! snSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValVa 485778 : ACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGT : 485834 146 : uTrpCysSerPheValThrValMetIleAlaValThrIleAspSerLeuTyrIleGln : 164 ! ! ! !.!!:!! !!.!!!::!! !:!!!:! ::: ||| ::: ! lLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAla 485835 : TCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCG : 485891 165 : IleValHisHisAspCysAlaIlePheAlaIleCysGly : 177 |||:!!!!.||| !|||!.!:!:!:!.!!||| !||| IleIleGlnHisThrCysGlyLeuTyrThrIleValGly 485892 : ATAATACAGCACACCTGTGGTTTGTATACAATCGTTGGG : 485932 vulgar: gi|815928873|ref|XP_012248903.1| 106 177 . KQ414815.1 485719 485932 + 132 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485720 485932 132 + . gene_id 1 ; sequence gi|815928873|ref|XP_012248903.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485720 485932 . + . KQ414815.1 exonerate:protein2genome:local exon 485720 485932 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485720 485932 132 + . alignment_id 1 ; Query gi|815928873|ref|XP_012248903.1| ; Align 485720 107 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928873|ref|XP_012248903.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 100 -> 175 Target range: 457186 -> 457411 101 : ValIleProLeuTyrProAlaPheLeuAspIleIleIleProLeuAsnGluThrArgG : 120 ..!:!:! !|||!:!||| !!!.|||||||||:!::!!||||||||||||:!!|||! ThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgP 457187 : ACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCC : 457244 121 : lnArgHisGlnMetPheArgLeuThrTyrPheLeuAspGluAsnArgTyrPheTyrPr : 139 !!.!. ! .!!! ! ! !||||||:!!||| !!!.!:!|||.!.:!! roCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTy 457245 : CCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTA : 457301 140 : oIleTyrPheHisSerLeuTrpCysSerPheValThrValMetIleAlaValThrIle : 158 !||| ! |||! !:!! !||| !.!.:!!.!!!.!! ! !..!.!!! ! rIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsn 457302 : TATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAAC : 457358 159 : AspSerLeuTyrIleGlnIleValHisHisAspCysAlaIlePheAlaIle : 175 !!:|||||| !||| !! !|||! |||! !|||!.!:!:||| !:!! GluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457359 : GAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: gi|815928873|ref|XP_012248903.1| 100 175 . KQ414815.1 457186 457411 + 122 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457187 457411 122 + . gene_id 2 ; sequence gi|815928873|ref|XP_012248903.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457187 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457187 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457187 457411 122 + . alignment_id 2 ; Query gi|815928873|ref|XP_012248903.1| ; Align 457187 101 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928873|ref|XP_012248903.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 108 -> 175 Target range: 482034 -> 482235 109 : LeuAspIleIleIleProLeuAsnGluThrArgGlnArgHisGlnMetPheArgLeuT : 128 ||||||:!!|||:!!|||||||||||||||||| !!.!!!. ! !:!! LeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMetG 482035 : CTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGG : 482092 129 : hrTyrPheLeuAspGluAsnArgTyrPheTyrProIleTyrPheHisSerLeuTrpCy : 147 !||||||:!!|||:!!.!.!:!|||! ! !||| ||||||..!! !!::! luTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSe 482093 : AGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTC : 482149 148 : sSerPheValThrValMetIleAlaValThrIleAspSerLeuTyrIleGlnIleVal : 166 !! !.!!|||..!!.!! !||| !||| !|||!!:!!!||| !:!!..! :!! rPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeu 482150 : CTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTT : 482206 167 : HisHisAspCysAlaIlePheAlaIle : 175 .!.|||! !...::!:!:|||.!!:!! GluHisAlaAlaSerLeuPheThrLeu 482207 : GAACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: gi|815928873|ref|XP_012248903.1| 108 175 . KQ414815.1 482034 482235 + 118 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482035 482235 118 + . gene_id 3 ; sequence gi|815928873|ref|XP_012248903.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482035 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 482035 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482035 482235 118 + . alignment_id 3 ; Query gi|815928873|ref|XP_012248903.1| ; Align 482035 109 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928873|ref|XP_012248903.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 83 -> 175 Target range: 475494 -> 475770 84 : IleGlyGluIleTyrArgThrPheValLeuSerCysMetSerGlyPheIleValIleP : 103 :::|||...||| !! !..!.!.|||! ! !! !!:! ! !.!.|||:!!:!!! ValGlyAsnIleValThrValLeuValTyrProThrIlePheThrMetIleLeuLeuL 475495 : gttgggaatattgtTACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTC : 475552 104 : roLeuTyrProAlaPheLeuAspIleIleIleProLeuAsnGluThrArgGlnArgHi : 122 !!!!! !! !.!!|||||| !:!::!!||||||||||||:!!|||! !!! euPheSerSerLysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTr 475553 : TCTTCTCGTCTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTG : 475609 123 : sGlnMetPheArgLeuThrTyrPheLeuAspGluAsnArgTyrPheTyrProIleTyr : 141 ...:!!...|||::: ||||||::::::|||.!.!:!|||||||||! !! ! pSerLeuIleArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerVal 475610 : GTCTCTGAtacgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTG : 475666 142 : PheHisSerLeuTrpCysSerPheValThrValMetIleAlaValThrIleAspSerL : 161 .!!:!!..! ! ! !.!!:!! !! !! ! !|||.!!! !!!::!!: IleTyrGlnThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaI 475667 : ATCTATCAGACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAA : 475726 162 : euTyrIleGlnIleValHisHisAspCysAlaIlePheAlaIle : 175 !!!:!! !..! :!!!!.||| ! ::::::||| ||| lePheThrMetTrpLeuGlnHisCysIleSerLeuPheGluIle 475727 : TATTTACCATGTGGTTGCAACATTGCATaagtttatttgaaatt : 475770 vulgar: gi|815928873|ref|XP_012248903.1| 83 175 . KQ414815.1 475494 475770 + 101 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475495 475770 101 + . gene_id 4 ; sequence gi|815928873|ref|XP_012248903.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475495 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475495 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475495 475770 101 + . alignment_id 4 ; Query gi|815928873|ref|XP_012248903.1| ; Align 475495 84 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1289 Query range: 3 -> 409 Target range: 21027 -> 24199 4 : AsnMetSerLeuLysTyrHisLysAspValSerPheSerValAlaValPheTyrLeuLys : 23 !:!|||||||||||||||!.!:!!||||||||| !!!!!:!!||| !||||||||| ! SerMetSerLeuLysTyrArgGlnAspValSerValArgLeuAlaAsnPheTyrLeuTyr 21028 : AGTATGAGCTTGAAATATCGCCAAGACGTTTCCGTTAGATTAGCCAATTTTTATCTGTAT : 21085 24 : IleValGlyLeuTrpLeuSerThrSerLeuAlaGluLysTrpPheArgAsnAlaLeuVal : 43 :!!||||||!!!|||!!!:!!.!!!:!! ! !|||:!!|||||| !!|||||| !:!! ValValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheGlyAsnAlaAlaIle 21086 : GTCGTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCGGAAACGCGGCGATT : 21145 44 : ThrTyrThrValLeuAlaIleIlePheAsnMetTrpMetGlnLeuArgGlyLeuTyrPhe : 63 !||||||:!!:!!.!!:!!.!!||| !||||||:!:||||||||||||||||||||| LeuTyrThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPhe 21146 : CTGTATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGACTTTATTTC : 21205 64 : SerTrpGlyAspPheSer >>>> Target Intron 1 >>>> ValSerThrTyrI : 74 |||||||||:!!|||..! 666 bp |||!!!! !|||! SerTrpGlyAsnPheGlu++ ++ValCysMetTyrM 21206 : TCCTGGGGAAACTTTGAAgt.........................aggTTTGCATGTACA : 21904 75 : leAlaCysAsnSerLeuGlyLeuPheMetAspLeuPheLysLeuLeuIleIlePheIleH : 94 !:|||||||||||||||!.!||| !!:!!|||:!!.!!|||:!!!!!:!!:!!.!!:!!! etAlaCysAsnSerLeuAlaLeuValLeuAspIleIleLysIlePheValLeuLeuValA 21905 : TGGCATGCAACAGTTTAGCCCTGGTTTTGGATATAATCAAGATTTTCGTCCTACTCGTAC : 21964 95 : isLysLysLysPheLeuTyrLeuIleValTyrMetGlnLysAsnPheTrpHisPheAsnT : 114 ..||||||||||||||| !||||||! !||||||||||||||||||||||||!!.|||| rgLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheTrpHisLeuAsnT 21965 : GGAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTTTGGCATTTGAACT : 22024 115 : yrAsnGlnTyrLysLysSerValLeuAlaAspAlaLysArgMetCysIleTyrPheValC : 134 ||:!!||| !!:!!!!.|||:!!:!!||| !!|||||||||! !|||||||||||||||| yrAspGlnAspGluAsnSerIleIleAlaHisAlaLysArgThrCysIleTyrPheValC 22025 : ACGACCAGGACGAGAATTCTATTATCGCACACGCGAAACGAACGTGCATCTACTTCGTCT : 22084 135 : ysValPheSerPheLeuSerGlnSerThrIlePheSerTyrIlePheMetProLeuIle{ : 154 ||||||||||||||! !||||||||||||:!!||||||||||||.!.! !|||!!!:!!{ ysValPheSerPheCysSerGlnSerThrValPheSerTyrIleIleArgProPheVal{ 22085 : GCGTCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTATATAATAAGGCCATTTGTA{ : 22144 155 : S} >>>> Target Intron 2 >>>> {er}AsnIleGlyLysAsnLysSerAspA : 163 |} 170 bp {||}|||:!!|||||||||:!!||||||| S}++ ++{er}AsnLeuGlyLysAsnGluSerAspA 22145 : T}gt.........................ag{ca}AATCTTGGAAAGAATGAATCTGATA : 22341 164 : rgValProIlePheHisMetHisLeuAspLeuProLeuAsnValSerProTyrTyrGluM : 183 ||! !! !|||!:! !!||| |||||||||||||||::!|||!!!||||||||||||: rgGluHisIleTyrAspMetTrpLeuAspLeuProLeuSerValThrProTyrTyrGluI 22342 : GAGAACATATATACGATATGTGGCTCGATCTACCATTATCCGTAACAccatattatgaaa : 22401 184 : etThrTyrLeuIleGln >>>> Target Intron 3 >>>> AlaLeuThrLeuTy : 193 ::||||||:!!|||||| 307 bp ||||||:!!:!!|| leThrTyrIleIleGln++ ++AlaLeuSerValTy 22402 : ttacttACATAATACAGgt.........................agGCTTTATCTGTGTA : 22738 194 : rGlnValGlyValCysTyrLeuCysValAspAsnIlePheCysIleMetCysLeuHisVa : 213 |||||||.!!!.!|||||||||||| ||| |||||| |||:::||||||||||| rGlnValSerAlaCysTyrLeuCysPheAspIleIlePhePheIleLeuCysLeuHisVa 22739 : CCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatttttttcattttgtgtCTACACGT : 22798 214 : lAlaSerGlnPheArgIleLeuGlnTyrArgIleAlaAsnValLeuSerLeuArgAspLy : 233 ||||.!!||||||||||||||||||||||||||||||||||||! !.!!|||!!!!!:! lAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIl 22799 : GGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGAT : 22858 234 : sValLysPheAspGlnAspThrAsnLeuAspSer<-><->SerAspGluPheTyrAlaIl : 251 !|||||| !..!:!!:!! !!!:! !|||..! |||!!::!!! !||| !! eValLysSerSerGluAsnProSerThrAspGluLeuTyrSerGluLysCysTyrIleLy 22859 : AGTGAAAAGCAGTGAAAATCCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAA : 22918 252 : ePheArgLysCysIleGlnGlnHisGlnAlaLeuIleArgPheCysThrThrLeuGluGl : 271 |||!:!!!.|||||||||||||||||||||||||||..!||||||.!!||||||||||| sPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGl 22919 : GTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGA : 22978 272 : uIlePheThrValIleIleLeuGlyGlnValLeuThrPheSerIleLeuIleCysPheVa : 291 |:!!||||||||||||:!!|||||||||||||||! !! !||||||||||||||||||:! uValPheThrValIleValLeuGlyGlnValLeuMetSerSerIleLeuIleCysPheIl 22979 : GGTATTCACGGTAATCGTACTCGGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCAT : 23038 292 : lGlyTyrGlnAlaLeuLeu >>>> Target Intron 4 >>>> ValLysLeuSer : 301 !|||||||||!.!|||||| 492 bp :!!||||||||| eGlyTyrGlnValLeuLeu++ ++IleLysLeuSer 23039 : CGGGTATCAAGTACTCCTGgt.........................agATAAAGTTATCA : 23560 302 : LeuSerTrpArgIleSerLeuValSerPheLeuThrThrAsnIleCysGlnLeuTrpIle : 321 !!!..!! !|||:!!:!!!!!!.!!!!||||||! !! !..!!!: !!|||||||||!!: PheGluSerArgValAlaPheAlaCysPheLeuMetMetGlyMetSerGlnLeuTrpMet 23561 : TTTGAATCGCGCGTTGCTTTCGCGTGCTTCTTGATGATGGGCATGAGTCAACTATGGATG : 23620 322 : PheThrTyrSerCysAsnAlaLeuIleGluGluSerMetAsnThrAlaAsnAlaAlaTyr : 341 |||||||||||||||:!!..!:!!! ! !||||||:!!|||! !|||.!.:!!!.!||| PheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyr 23621 : TTCACGTATAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTAC : 23680 342 : AlaAlaProTrpIleTyrLeuSerMetAspLysPheGlyGluMetThrArgLysAspLeu : 361 |||!.!||||||||| !!||| !!|||||||||||||||:!!:!! !||||||!!:||| AlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysGluLeu 23681 : GCTGGACCATGGATAAATTTACCAATGGACAAATTTGGAAAACTGCTAAGAAAAGAATTG : 23740 362 : GlnLeuValLeuMetArgSerArgArgAlaCysTyrLeuThrAlaCysGlyPhePhePro : 381 |||:!!:!!:!!:!!|||:!!|||||| !!! ! !||||||||||||||||||||| !! GlnMetLeuIleLeuArgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSer 23741 : CAAATGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCT : 23800 382 : IleSerLeuGluThrPheThrLys >>>> Target Intron 5 >>>> IleMetS : 392 |||||||||||||||||||||||| 313 bp ||||||| IleSerLeuGluThrPheThrLys++ ++IleMetS 23801 : ATATCTCTCGAAACCTTTACTAAGgt.........................agATCATGA : 24146 393 : erSerAlaMetSerTyrPheThrIleLeuLysGlnArgThrValAspThrIle : 409 ||!!!:!!|||||||||||||||:!!||||||||| !!! !! !||||||:!! erThrSerMetSerTyrPheThrLeuLeuLysGlnCysIleGluAspThrVal 24147 : GTACATCAATGTCGTATTTCACATTATTAAAACAATGTATCGAGGACACGGTA : 24199 vulgar: gi|815927557|ref|XP_003494290.2| 3 409 . KQ414828.1 21027 24199 + 1289 M 66 198 5 0 2 I 0 662 3 0 2 M 84 252 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 34 102 5 0 2 I 0 303 3 0 2 M 56 168 G 0 6 M 53 159 5 0 2 I 0 488 3 0 2 M 92 276 5 0 2 I 0 309 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21028 24199 1289 + . gene_id 1 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 21028 21225 . + . KQ414828.1 exonerate:protein2genome:local exon 21028 21225 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 21226 21227 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 21226 21891 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 21890 21891 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 21892 22144 . + . KQ414828.1 exonerate:protein2genome:local exon 21892 22144 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22145 22146 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22145 22314 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 22313 22314 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 22315 22418 . + . KQ414828.1 exonerate:protein2genome:local exon 22315 22418 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22419 22420 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22419 22725 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 23058 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23059 23060 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23059 23550 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 23549 23550 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 23551 23826 . + . KQ414828.1 exonerate:protein2genome:local exon 23551 23826 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23827 23828 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23827 24139 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 24138 24139 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 24140 24199 . + . KQ414828.1 exonerate:protein2genome:local exon 24140 24199 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21028 24199 1289 + . alignment_id 1 ; Query gi|815927557|ref|XP_003494290.2| ; Align 21028 4 198 ; Align 21892 70 252 ; Align 22317 155 102 ; Align 22726 189 168 ; Align 22900 245 159 ; Align 23551 298 276 ; Align 24140 390 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 939 Query range: 9 -> 408 Target range: 721 -> 6474 10 : HisLysAspValSerPheSerValAlaValPheTyrLeuLysIleValGlyLeuTrpLeuSe : 30 :!!!:!|||:!!:!! ! !!!|||.!!!.!|||||||||||||||:!!|||!!!||||||:! AsnArgAspIleAlaValThrValThrAlaPheTyrLeuLysIleIleGlyPheTrpLeuAl 722 : AACAGGGACATAGCGGTGACCGTTACGGCTTTCTACTTGAAAATTATCGGCTTCTGGTTAGC : 782 31 : rThrSerLeuAlaGluLysTrpPheArgAsnAlaLeuValThrTyrThrValLeuAlaIleI : 51 ! !!!!! !! !|||||| |||... !!.!!:!|||:!!!!! !:!:: aAspThrTyrGluGluLysArgArgArgLysPheAlaGlnAsnPheThrIlePheMetLeuV 783 : TGACACTTACGAGGAGAAacgtcgaagaaaattcgcgcAGAATTTCACGATATTTATGCTGG : 845 52 : lePheAsnMetTrpMetGlnLeuArgGlyLeuTyrPheSerTrpGlyAspPheSer >>>> : 70 !:! ! !:!! !!::!! !|||! !:!!|||!:!!!!||||||||||||||| alCysAlaValValIleGluThrArgAspIleTyrTyrThrTrpGlyAspPheSer++ 846 : TGTGCGCTGTGGTAATTGAGACGAGGGATATCTATTACACCTGGGGTGATTTCAGCgt.... : 904 71 : Target Intron 1 >>>> ValSerThrTyrIleAlaCysAsnSerLeuGlyLeuPhe : 82 1408 bp :!! !..!|||||| !||||||! !||| !||| ! ++IleValValTyrIleMetCysAsnIleLeuThrLeuGly 905 : .....................agATCGTTGTATACATAATGTGCAACATTCTAACACTGGGC : 2346 83 : MetAspLeuPheLysLeuLeuIleIlePheIleHisLysLysLysPheLeuTyrLeuIleVa : 103 !!:..!|||||||||:!!!!!:!! .!. !|||||||||...||| |||||| IleSerLeuPheLysIlePheLeuSerMetTrpSerLysLysLysLeuLeuGluLeuIleLy 2347 : ATAAGTTTGTTCAAGATCTTTCTCTCGATGTGGAGTAAGAAAAAACttttggaattaattaa : 2409 104 : lTyrMetGlnLysAsnPheTrpHisPheAsnTyrAsnGlnTyrLysLysSerValLeuAlaA : 124 ::: ::!! !||||||||||||! :!!|||:!!..! ! :!!:!!! !:!!:!! !! sPheAlaArgThrAsnPheTrpHisSerAspTyrAspSerGlnGluGlnIleIleValAsnG 2410 : attcgccAGAACGAATTTCTGGCATTCGGATTATGACTCGCAGGAGCAAATTATTGTGAACG : 2472 125 : spAlaLysArgMetCysIleTyrPheValCysValPheSerPheLeuSerGlnSerThrIle : 144 !:..!||||||! |||! !!:!.!!:!!|||||||||!:!|||!!!:!!.!..!!|||:!: luCysLysArgThrCysThrPheLeuIleCysValPheAsnPhePheAlaAsnGlyThrVal 2473 : AGTGTAAACGCACTTGTACATTCCTTATATGCGTGTTTAATTTCTTCGCTAATGGGACAGTG : 2532 145 : PheSerTyrIlePheMetProLeuIle{S} >>>> Target Intron 2 >>>> {er : 154 ! !.!!||||||.!!! !|||:!!:!!{:} 318 bp {!! SerGlyTyrIleIleArgProIleVal{A}++ ++{la 2533 : TCTGGATACATAATCAGGCCAATTGTA{G}gt.........................ag{CA : 2881 155 : }AsnIleGlyLysAsnLysSerAspArgValProIlePheHisMetHisLeuAspLeuProL : 175 }!::||||||||||||:::|||||||||:!!! !||| !!:!!.!. :!!|||||||||: }SerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuProI 2882 : }AgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCCGA : 2943 176 : euAsnValSerProTyrTyrGluMetThrTyrLeuIleGln >>>> Target Intron : 189 !!!.!:!!!!!||||||||||||::: ::: |||||| 406 bp leThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2944 : TAACCATCACACCATactatgaaatattatttacgaTACAGgt................... : 2987 190 : 3 >>>> AlaLeuThrLeuTyrGlnValGlyValCysTyrLeuCysValAspAsnIlePhe : 206 !!!!! !:!! ! ||| !!:!! !!|||||||||:!!||||||.!!.!. ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheLeu 2988 : ......agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTCTG : 3442 207 : CysIleMetCysLeuHisValAlaSerGlnPheArgIleLeuGlnTyrArgIleAlaAsnVa : 227 |||!!:!!: !||||||..!|||!!!||||||||||||||||||||||||:!::!!||||| CysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnVa 3443 : TGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAATGT : 3505 228 : lLeuSerLeuArgAspLysValLysPheAspGlnAspThrAsnLeuAspSerSerAspGluP : 248 |! !.!! !!.!!!:::: ... ...! !..!!:!|||||||||! lCysGlyAlaAsnGluArgSerAspLysIleSerLysLysThrProSerAsnSerAspGluC 3506 : GTGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTCGGACGAAT : 3568 249 : heTyrAlaIlePheArgLysCysIleGlnGlnHisGlnAlaLeuIleArgPheCysThrThr : 268 !||||||! |||!:!!!.|||||||||||||||||||||||||||..!!:!|||!.!! ! ysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnLys 3569 : GCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACAAA : 3628 269 : LeuGluGluIlePheThrValIleIleLeuGlyGlnValLeuThrPheSerIleLeuIleCy : 289 |||:!!|||:!:||| !:!!.!!:!:|||!.!||||||||| !||||||:!:|||!!:|| LeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCy 3629 : CTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTG : 3691 290 : sPheValGlyTyrGlnAlaLeuLeu >>>> Target Intron 4 >>>> ValLysLe : 300 |.!!! !|||||| !:!!:!! 457 bp ! ! ! sLeuAspGlyTyr---LeuValMet++ ++GluAspTh 3692 : CCTCGATGGATAT---TTGGTGATGgt.........................agGAAGATAC : 4178 301 : uSerLeuSerTrpArgIleSerLeuValSerPheLeuThrThrAsnIleCysGlnLeuTrpI : 321 ! !!:!!! ! !|||:!!!!!!!!:!!! ! !|||||| ! !:!:|||||||||! !! rProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuM 4179 : TCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGA : 4241 322 : lePheThrTyrSerCysAsnAlaLeuIleGluGluSerMetAsnThrAlaAsnAlaAlaTyr : 341 !:|||||||||||||||:!!..!||||||..!||||||:!!|||..!||||||||| !||| etPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIleTyr 4242 : TGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATATAC : 4301 342 : AlaAlaProTrpIleTyrLeuSerMetAspLysPheGlyGluMetThrArgLysAspLeuGl : 362 ! !..! !!||||||:!!||| !!||||||!:!! !|||..!||| !|||||||||||| AspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAspLeuTh 4302 : GACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGAC : 4364 363 : nLeuValLeuMetArgSerArgArgAlaCysTyrLeuThrAlaCysGlyPhePheProIleS : 383 !!!!|||:!! ||||||||| ! !!|||! !||||||||||||||||||||||||:!:| rPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePheProValS 4365 : ATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGT : 4427 384 : erLeuGluThrPheThrLys >>>> Target Intron 5 >>>> IleMetSerSerA : 394 |||||||||||!:!|||..! 1970 bp :!!!!:|||!!!| erLeuGluThrTyrThrSer++ ++ValIleSerThrA 4428 : CACTGGAAACGTACACTTCGgt.........................agGTTATAAGTACAG : 6430 395 : laMetSerTyrPheThrIleLeuLysGlnArgThrValAspThr : 408 ||:!!||||||||||||:!:|||!:!||||||! !! !|||!:! laValSerTyrPheThrLeuLeuArgGlnArgIleGluAspSer 6431 : CAGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAGGACAGC : 6474 vulgar: gi|815927557|ref|XP_003494290.2| 9 408 . KQ414828.1 721 6474 + 939 M 60 180 5 0 2 I 0 1404 3 0 2 M 84 252 S 0 1 5 0 2 I 0 314 3 0 2 S 1 2 M 34 102 5 0 2 I 0 402 3 0 2 M 105 315 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 722 6474 939 + . gene_id 2 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 722 901 . + . KQ414828.1 exonerate:protein2genome:local exon 722 901 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 902 903 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 902 2309 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 2308 2309 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 2310 2562 . + . KQ414828.1 exonerate:protein2genome:local exon 2310 2562 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2563 2564 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 2563 2880 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 2879 2880 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 2881 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2881 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 3 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6474 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6474 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 722 6474 939 + . alignment_id 2 ; Query gi|815927557|ref|XP_003494290.2| ; Align 722 10 180 ; Align 2310 70 252 ; Align 2883 155 102 ; Align 3391 189 315 ; Align 3706 295 9 ; Align 4172 298 276 ; Align 6418 390 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 748 Query range: 151 -> 409 Target range: 37450 -> 39223 152 : LeuIleSerAsnIleGlyLysAsnLysSerAspArgValProIlePheHisMetHisLeu : 171 ::: :::|||:!!|||||||||:!!|||||||||! !! !|||!:! !!||| ||| IleSerAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 37451 : atttcagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 37508 172 : AspLeuProLeuAsnValSerProTyrTyrGluMetThrTyrLeuIleGln >>>> Ta : 189 ||||||||||||::!:!!!!!||||||||||||:::||||||:!!|||||| AspLeuProLeuSerIleThrProTyrTyrGluIleThrTyrIleIleGln++ 37509 : GATCTACCATTATCCATAACAccatattatgaaattacttACATAATACAGgt....... : 37564 190 : rget Intron 1 >>>> AlaLeuThrLeuTyrGlnValGlyValCysTyrLeuCysV : 202 307 bp ||||||:!!:!!|||||||||.!!!.!|||||||||||| ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysP 37565 : ..................agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCt : 37908 203 : alAspAsnIlePheCysIleMetCysLeuHisValAlaSerGlnPheArgIleLeuGlnT : 222 ||| |||||| |||:::|||||||||||||||.!!||||||||||||||||||| heAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnT 37909 : ttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAAT : 37968 223 : yrArgIleAlaAsnValLeuSerLeuArgAspLysValLysPheAspGlnAspThrAsnL : 242 |||||||||||||||||! !.!!|||!!!!!:! !|||||| !..!:!!:!! !!!:! yrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSerT 37969 : ACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCA : 38028 243 : euAspSer<-><->SerAspGluPheTyrAlaIlePheArgLysCysIleGlnGlnHisG : 260 !|||..! |||!!::!!! !||| !! |||!:!!!.|||||||||||||||| hrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisG 38029 : CAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATC : 38088 261 : lnAlaLeuIleArgPheCysThrThrLeuGluGluIlePheThrValIleIleLeuGlyG : 280 |||||||||||..!||||||.!!||||||||||||:!!|||||||||||| !||||||| lnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyG 38089 : AGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGAC : 38148 281 : lnValLeuThrPheSerIleLeuIleCysPheValGlyTyrGlnAlaLeuLeuValLysL : 300 ||||||||! !||||||||||||||||||||||||! !||||||||||||||||||!..: lnValLeuMetPheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeuValSerI 38149 : AAGTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGGTGAGTA : 38208 301 : eu >>>> Target Intron 2 >>>> SerLeuSerTrpArgIleSerLeuValSe : 310 !! 280 bp :::... ::: !:!! !:!!! le++ ++AsnPheTyrTyrLeuTrpAsn***MetPh 38209 : TCgt.........................agaatttttattacctgTGGAATTAAATGTT : 38518 311 : rPheLeuThrThrAsnIleCysGlnLeuTrpIlePheThrTyrSerCysAsnAlaLeuIl : 330 ! !! !|||..!:!: !!|||||||||!!:|||||||||||||||:!!..!:!!! eAlaThrMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleTh 38519 : CGCAACGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAAC : 38578 331 : eGluGluSerMetAsnThrAlaAsnAlaAlaTyrAlaAlaProTrpIleTyrLeuSerMe : 350 ! !||||||:!!|||! !|||.!.:!!!.!||||||!.!||||||||| !!||| !!|| rThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMe 38579 : AACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAAT : 38638 351 : tAspLysPheGlyGluMetThrArgLysAspLeuGlnLeuValLeuMetArgSerArgAr : 370 |||||||||||||:::::: !|||||||||||||||:!!:!!:!!:!!|||:!!||||| tAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgAr 38639 : ggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACG : 38698 371 : gAlaCysTyrLeuThrAlaCysGlyPhePheProIleSerLeuGluThrPheThrLys : 390 | !!! !! !||||||||||||||||||||| !!|||||||||||||||||||||||| gProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 38699 : ACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt : 38758 391 : >>>> Target Intron 3 >>>> IleMetSerSerAlaMetSerTyrPheThrIle : 400 406 bp |||||||||!!!:!!|||||||||||||||:!! ++IleMetSerThrSerMetSerTyrPheThrLeu 38759 : .........................agATCATGAGTACATCAATGTCGTATTTCACATTA : 39194 401 : LeuLysGlnArgThrValAspThrIle : 409 |||||||||!!!! !! !||||||:!! LeuLysGlnSerIleAspAspThrVal 39195 : TTAAAACAAAGTATCGACGACACGGTA : 39223 vulgar: gi|815927557|ref|XP_003494290.2| 151 409 . KQ414828.1 37450 39223 + 748 M 37 111 5 0 2 I 0 303 3 0 2 M 56 168 G 0 6 M 56 168 5 0 2 I 0 276 3 0 2 M 89 267 5 0 2 I 0 402 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37451 39223 748 + . gene_id 3 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37451 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37451 37561 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 38210 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 38210 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 38211 38212 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 38211 38490 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 38489 38490 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 38491 38757 . + . KQ414828.1 exonerate:protein2genome:local exon 38491 38757 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 38758 38759 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 38758 39163 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 39162 39163 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 39164 39223 . + . KQ414828.1 exonerate:protein2genome:local exon 39164 39223 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37451 39223 748 + . alignment_id 3 ; Query gi|815927557|ref|XP_003494290.2| ; Align 37451 152 111 ; Align 37869 189 168 ; Align 38043 245 168 ; Align 38491 301 267 ; Align 39164 390 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 694 Query range: 185 -> 409 Target range: 32795 -> 34319 186 : LeuIleGlnAlaLeuThrLeuTyrGlnValGlyValCysTyrLeuCysValAspAsnIle : 205 |||! |||||||||:!!:!!||||||||||||||||||||||||||| ||||||||| LeuThrGlnAlaLeuSerValTyrGlnValGlyValCysTyrLeuCysPheAspAsnIle 32796 : ctCACGCAGGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCTttgataacatt : 32853 206 : PheCysIleMetCysLeuHisValAlaSerGlnPheArgIleLeuGlnTyrArgIleAla : 225 ||| |||||||||||||||||||||.!!|||||||||||||||||||||||||||||| PhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAla 32854 : tttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCC : 32913 226 : AsnValLeuSerLeuArgAspLysValLysPheAspGlnAspThrAsnLeuAspSer<-> : 245 ||||||! !.!!|||!!!!!:! !|||||| !:!!.!.:!!|||!:! !! !..! AsnValSerGlyLeuSerGluIleValLysSerAsnAspAsnThrSerThrAlaGluLeu 32914 : AATGTGTCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACAAGCACGGCTGAATTA : 32973 246 : <->SerAspGluPheTyrAlaIlePheArgLysCysIleGlnGlnHisGlnAlaLeuIle : 263 |||!!::!!! !||| !! |||!:!!!.||||||||||||||||||||||||||| TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 32974 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTaatt : 33033 264 : ArgPheCysThrThrLeuGluGluIlePheThrValIleIleLeuGlyGlnValLeuThr : 283 ...|||||| |||||||||:!!||||||||||||:!!|||||||||||||||! ! GluPheCysGluIleLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMet 33034 : gaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTAATG : 33093 284 : PheSerIleLeuIleCysPheValGlyTyrGlnAlaLeuLeu >>>> Target Intr : 298 |||||||||:!!|||||||||!.!||||||:!!!.!|||||| 406 bp PheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeu++ 33094 : TTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGgt................ : 33140 299 : on 1 >>>> ValLysLeuSerLeuSerTrpArgIleSerLeuValSerPheLeuThrT : 314 :!!! !||| !!!!!..!! !|||:!!:!!!!!..!!!!||||||! !| ++IleThrLeuProPheGluSerArgValAlaPheThrCysPheLeuIleT 33141 : .........agATAACGTTACCATTTGAATCGCGCGTTGCTTTCACGTGCTTCTTGATTA : 33592 315 : hrAsnIleCysGlnLeuTrpIlePheThrTyrSerCysAsnAlaLeuIleGluGluSerM : 334 ||..!:!: !!|||||||||!!:||||||||||||||||||..!:!!! ! !||||||: hrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAsnCysIleThrThrGluSerL 33593 : CGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCAATTGCATAACAACAGAAAGCC : 33652 335 : etAsnThrAlaAsnAlaAlaTyrAlaAlaProTrpIleTyrLeuSerMetAspLysPheG : 354 !!|||! !|||.!.:!!!.!||||||!.!||||||||| !!||| !!||||||||||||| euAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheG 33653 : TGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATggataaatttg : 33712 355 : lyGluMetThrArgLysAspLeuGlnLeuValLeuMetArgSerArgArgAlaCysTyrL : 374 ||:::::: !|||||||||||||||:!!:!!:!!:!!|||:!!|||||| !!! ! !| lyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerAlaL 33713 : gaaaactgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCGCTT : 33772 375 : euThrAlaCysGlyPhePheProIleSerLeuGluThrPheThrLys >>>> Target : 390 |||||||||||||||||||| !!|||!!!|||||||||||||||||| 4 euThrAlaCysGlyPhePheSerIleThrLeuGluThrPheThrLys++ 33773 : TGACTGCCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTACTAAGgt........... : 33822 391 : Intron 2 >>>> IleMetSerSerAlaMetSerTyrPheThrIleLeuLysGlnAr : 404 40 bp |||||||||!!!:!!|||||||||||||||:!!|||||||||!! ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnSe 33823 : ..............agATCATGAGTACATCAATGTCGTATTTCACCCTACTAAAACAAAG : 34302 405 : gThrValAspThrIle : 409 !.!!! !||||||:!! rAlaGluAspThrVal 34303 : TGCCGAGGACACAGTA : 34319 vulgar: gi|815927557|ref|XP_003494290.2| 185 409 . KQ414828.1 32795 34319 + 694 M 59 177 G 0 6 M 53 159 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32796 34319 694 + . gene_id 4 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32796 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32796 33137 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 2 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34319 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34319 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32796 34319 694 + . alignment_id 4 ; Query gi|815927557|ref|XP_003494290.2| ; Align 32796 186 177 ; Align 32979 245 159 ; Align 33544 298 276 ; Align 34260 390 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 630 Query range: 3 -> 193 Target range: 31102 -> 32512 4 : AsnMetSerLeuLysTyrHisLysAspValSerPheSerValAlaValPheTyrLeuLys : 23 !:!|||||||||||||||!.!:!!||||||||||||!!!:!!||| !|||!:!||| ! SerMetSerLeuLysTyrArgGlnAspValSerPheArgLeuAlaAsnPhePheLeuTyr 31103 : AGTATGAGCTTGAAATATCGTCAAGACGTTTCCTTTAGATTAGCCAACTTTTTTCTGTAT : 31160 24 : IleValGlyLeuTrpLeuSerThrSerLeuAlaGluLysTrpPheArgAsnAlaLeuVal : 43 :!!||||||!!!|||!!!:!!.!!!:!! ! !|||:!!||||||||||||||| !:!! ValValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIle 31161 : GTTGTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCTGCGATT : 31220 44 : ThrTyrThrValLeuAlaIleIlePheAsnMetTrpMetGlnLeuArgGlyLeuTyrPhe : 63 !||||||:!!:!!.!!:!!.!!||| !||||||:!:||||||||||||||||||||| LeuTyrThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPhe 31221 : CTGTATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGGCTTTATTTC : 31280 64 : SerTrpGlyAspPheSer >>>> Target Intron 1 >>>> ValSerThrTyrI : 74 |||||||||:!!|||..! 670 bp |||!!!! !|||! SerTrpGlyAsnPheGlu++ ++ValCysMetTyrM 31281 : TCCTGGGGAAACTTTGAAgt.........................agGTTTGCATGTACA : 31983 75 : leAlaCysAsnSerLeuGlyLeuPheMetAspLeuPheLysLeuLeuIleIlePheIleH : 94 !:||||||||||||:!!!.!||| !!:!!|||:!!.!!|||:!!!!!:!!:!! !!:!!! etAlaCysAsnSerIleAlaLeuValLeuAspIleIleLysIlePheValLeuValValA 31984 : TGGCATGCAACAGTATAGCCCTGGTTTTGGATATAATCAAGATTTTCGTCCTAGTCGTAC : 32043 95 : isLysLysLysPheLeuTyrLeuIleValTyrMetGlnLysAsnPheTrpHisPheAsnT : 114 ..||||||||||||||| !||||||! !||||||||||||||||||:::|||...|||| rgLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPhePheHisLeuAsnT 32044 : GGAAGAAAAAGTTTCTCGGTCTGATTGAGTACATgcagaagaatttctttcatttgaaCT : 32103 115 : yrAsnGlnTyrLysLysSerValLeuAlaAspAlaLysArgMetCysIleTyrPheValC : 134 ||:!!||| !!:!!!!.|||:!!:!!||| !!|||||||||! !|||||||||||||||| yrAspGlnAspGluAsnSerIleIleAlaHisAlaLysArgThrCysIleTyrPheValC 32104 : ACGATCAGGACGAGAATTCTATTATCGCACACGCGAAACGAACGTGCATCTACTTCGTCT : 32163 135 : ysValPheSerPheLeuSerGlnSerThrIlePheSerTyrIlePheMetProLeuIle{ : 154 ||||||||||||||! !||||||||||||:!!||||||||||||.!.! !|||!!!:!!{ ysValPheSerPheCysSerGlnSerThrValPheSerTyrIleIleArgProPheVal{ 32164 : GCGTCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTATATAATAAGGCCATTTGTA{ : 32223 155 : S} >>>> Target Intron 2 >>>> {er}AsnIleGlyLysAsnLysSerAspA : 163 |} 170 bp {||}|||:!!|||||||||:!!||||||| S}++ ++{er}AsnLeuGlyLysAsnGluSerAspA 32224 : T}gt.........................ag{ca}AATCTTGGAAAGAATGAATCTGATA : 32420 164 : rgValProIlePheHisMetHisLeuAspLeuProLeuAsnValSerProTyrTyrGluM : 183 ||! !! !|||!:! !!||| |||||||||||||||::!|||!!!||||||||||||: rgGluHisIleTyrAspMetTrpLeuAspLeuProLeuSerValThrProTyrTyrGluI 32421 : GAGAACATATATACGATATGTGGCTCGATCTACCATTATCCGTAACAccatattatgaaa : 32480 184 : etThrTyrLeuIleGlnAlaLeuThrLeuTyr : 193 ::||||||:!!||||||!.!||| !!:!!!:! leThrTyrIleIleGlnValLeuProIlePhe 32481 : ttacttACATAATACAGGTATTACCAATTTTC : 32512 vulgar: gi|815927557|ref|XP_003494290.2| 3 193 . KQ414828.1 31102 32512 + 630 M 66 198 5 0 2 I 0 666 3 0 2 M 84 252 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31103 32512 630 + . gene_id 5 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 31103 31300 . + . KQ414828.1 exonerate:protein2genome:local exon 31103 31300 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 31301 31302 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 31301 31970 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 31969 31970 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 31971 32223 . + . KQ414828.1 exonerate:protein2genome:local exon 31971 32223 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32224 32225 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32224 32393 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 32392 32393 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 32394 32512 . + . KQ414828.1 exonerate:protein2genome:local exon 32394 32512 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31103 32512 630 + . alignment_id 5 ; Query gi|815927557|ref|XP_003494290.2| ; Align 31103 4 198 ; Align 31971 70 252 ; Align 32396 155 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 577 Query range: 151 -> 405 Target range: 17818 -> 19903 152 : LeuIleSerAsnIleGlyLysAsnLysSerAspArgValProIlePheHisMetHisLeu : 171 :!!:!::::|||||||||||||||:::|||!!:|||:!!! ! !|||:!!||| :!! IleLeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpVal 17819 : ATTTTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTC : 17876 172 : AspLeuProLeuAsnValSerProTyrTyrGluMetThrTyrLeuIleGln >>>> Ta : 189 :!!|||||||||::::!!!!!||||||||||||:::|||::: :::||| AsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln++ 17877 : AACTTGCCATTATCAATGACGCCATATTACgaaataactttttcattaCAGgt....... : 17932 190 : rget Intron 1 >>>> AlaLeuThrLeuTyrGlnValGlyValCysTyrLeuCysV : 202 110 bp ..!|||:!!||||||!!.:!!|||||| !!|||!!!||| ++ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysP 17933 : ..................aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgct : 18079 203 : alAspAsnIlePheCysIleMetCysLeuHisValAlaSerGlnPheArgIleLeuGlnT : 222 ||||||......||||||||| !||||||!.!|||!!!|||||||||:!!||||||| heAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnT 18080 : tcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAAT : 18139 223 : yrArgIleAlaAsnValLeuSerLeuArgAspLysValLysPheAspGlnAsp<-><->T : 240 |||||!!:||||||:!! !..!|||!:!|||||| ::: ::::::::: | yrArgMetAlaAsnMetThrAspLeuLysAspLysGluArgLysGluArgAsnMetLysT 18140 : ACCGAATGGCGAATATGACCGATTTAAAGGacaaagagaggaaagagagaaatatgaAGA : 18199 241 : hrAsnLeuAspSer<-><-><->SerAspGluPheTyrAlaIlePheArgLysCysIleG : 257 ||!:!:!!..!||| :!! |||! !||| !:!!.!!!:! ! ! !|||: hrSerValSerSerAlaCysPheAlaThrGluCysTyrAsnValLeuLysAspTyrIleA 18200 : CAAGTGTGAGTTCGGCGTGCTTTGCAACAGAATGTTACAACGTTCTCAAAGATTATATCA : 18259 258 : lnGlnHisGlnAlaLeuIleArgPheCysThrThrLeuGluGluIlePheThrValIleI : 277 :!||||||||| !|||||| !!:!|||!.!! !||||||:!!:!:|||!.!:!!|||: rgGlnHisGlnAsnLeuIleAlaTyrCysAsnLysLeuGluLysValPheAsnIleIleV 18260 : GACAGCATCAGAACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGTTCAATATCATTG : 18319 278 : leLeuGlyGlnValLeuThrPheSerIleLeuIleCysPheValGlyTyrGlnAlaLeuL : 297 !!|||||||||:!!|||! !||||||!!:|||||||||.!!! !|||!:!||| !|||: alLeuGlyGlnLeuLeuMetPheSerMetLeuIleCysLeuAspGlyPheGlnIleLeuM 18320 : TTCTGGGGCAATTGTTAATGTTCAGCATGTTGATCTGTCTCGATGGATTTCAGATACTTA : 18379 298 : eu >>>> Target Intron 2 >>>> ValLysLeuSerLeuSerTrpArgIleSe : 307 !! 975 bp !.!!!. ! !! !!!! |||:!:! et++ ++AlaAsnThrProThrArgThrArgLeuIl 18380 : TGgt.........................agGCAAATACACCTACCAGAACCCGACTGAT : 19384 308 : rLeuValSerPheLeuThrThrAsnIleCysGlnLeuTrpIlePheThrTyrSerCysAs : 327 !!!!:!!! ! !:!! !.!! !!!:||||||||| !!!:|||||||||||||||:! ePheIlePheHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSerCysAs 19385 : TTTCATCTTTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGCTGCGA : 19444 328 : nAlaLeuIleGluGluSerMetAsnThrAlaAsnAlaAlaTyrAlaAlaProTrpIleTy : 347 !..!:!!|||..!||||||! !!:!||||||.!.|||!.!|||::!!.!||||||! ! pCysIleIleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyProTrpThrLe 19445 : CTGCATCATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGACACT : 19504 348 : rLeuSerMetAspLysPheGlyGluMetThrArgLysAspLeuGlnLeuValLeuMetAr : 367 !||| !!|||..! ! !|||:!!|||! !||||||||||||..!||||||:!!||||| uLeuProMetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuValIleMetAr 19505 : TTTACCAATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCATGAG : 19564 368 : gSerArgArgAlaCysTyrLeuThrAlaCysGlyPhePheProIleSerLeuGluThrPh : 387 ||||!!! ! !!|||! !||||||||| ! ||||||||| !:!:||||||||||||!: gSerSerValProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGluThrTy 19565 : ATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAACGTA : 19624 388 : eThrLys >>>> Target Intron 3 >>>> IleMetSerSerAlaMetSerTyr : 397 !||| ! 223 bp :!!:!:|||!!!||| |||||| rThrGly++ ++ValLeuSerThrAlaAlaSerTyr 19625 : CACAGGGgt.........................agGTTTTAAGCACCGCAGCCTCATAC : 19877 398 : PheThrIleLeuLysGlnArgThr : 405 ||||||:!:||||||||||||:!! PheThrLeuLeuLysGlnArgSer 19878 : TTTACGTTGCTGAAGCAAAGATCA : 19903 vulgar: gi|815927557|ref|XP_003494290.2| 151 405 . KQ414828.1 17818 19903 + 577 M 37 111 5 0 2 I 0 106 3 0 2 M 51 153 G 0 6 M 5 15 G 0 9 M 53 159 5 0 2 I 0 971 3 0 2 M 92 276 5 0 2 I 0 219 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17819 19903 577 + . gene_id 6 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17819 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17819 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18381 . + . insertions 15 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19903 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19903 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17819 19903 577 + . alignment_id 6 ; Query gi|815927557|ref|XP_003494290.2| ; Align 17819 152 111 ; Align 18040 189 153 ; Align 18199 240 15 ; Align 18223 245 159 ; Align 19357 298 276 ; Align 19856 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 415 Query range: 3 -> 153 Target range: 26057 -> 27176 4 : AsnMetSerLeuLysTyrHisLysAspValSerPheSerValAlaValPheTyrLeuLys : 23 !.!|||||||||||||||!.!:!!||||||||| !!!!!:!!||| !|||!:!||| ! ThrMetSerLeuLysTyrArgGlnAspValSerValArgLeuAlaAsnPhePheLeuTyr 26058 : ACTATGAGCTTGAAATATCGTCAAGACGTTTCCGTTAGATTAGCCAACTTTTTTCTGTAT : 26115 24 : IleValGlyLeuTrpLeuSerThrSerLeuAlaGluLysTrpPheArgAsnAlaLeuVal : 43 :!!||||||!!!|||!!!:!!.!!!:!! ! !|||:!!||||||||||||||| !:!! ValValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIle 26116 : GTCGTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCGGCGATT : 26175 44 : ThrTyrThrValLeuAlaIleIlePheAsnMetTrpMetGlnLeu >>>> Target I : 59 !||||||:!!:!!.!!:!!.!!||| !||||||:!:|||||| 669 LeuTyrThrIleValThrValPhePheValMetTrpLeuGlnLeu+- 26176 : CTGTATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGgg............. : 26225 60 : ntron 1 >>>> ArgGlyLeuTyrPheSerTrpGlyAspPheSerValSerThrTyrI : 74 bp ... |||||| ::: .....!|||!!!! !|||! +-AsnLysLeuTyrVal***PheLeuPheLeuGlnValCysMetTyrM 26226 : ............aaaacaaattatacgtctaatttctatttctacaGGTTTGCATGTACA : 26937 75 : leAlaCysAsnSerLeuGlyLeuPheMetAspLeuPheLysLeuLeuIleIlePheIleH : 94 !:||| !!|||.!!|||!.!:!! !!:!!|||:!!.!!|||:!!!!!! !:!! !!:!!| etAlaGlyAsnGlyLeuAlaMetValLeuAspIleIleLysIlePheThrLeuValValH 26938 : TGGCTGGCAACGGTTTAGCCATGGTTTTGGATATAATCAAGATTTTCACCCTAGTCGTAC : 26997 95 : isLysLysLysPheLeuTyrLeuIleValTyrMetGlnLysAsnPheTrpHisPheAsnT : 114 ||||||||||||||||| !||||||! !||||||||||||||||||||||||!!.|||| isLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheTrpHisLeuAsnT 26998 : ACAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTTTGGCATTTGAACT : 27057 115 : yrAsnGlnTyrLysLysSerValLeuAlaAspAlaLysArgMetCysIleTyrPheValC : 134 ||:!!||||||:!!!!.||||||||||||.!.|||||||||||||||||||||||||||| yrAspGlnTyrGluAsnSerValLeuAlaGlnAlaLysArgMetCysIleTyrPheValC 27058 : ACGATCAGTACGAGAATTCTGTTTTGGCACAGGCGAAACGAATGTGCATTTACTTCGTGT : 27117 135 : ysValPheSerPheLeuSerGlnSerThrIlePheSerTyrIlePheMetProLeuIle : 153 |||||...||||||...|||||||||:!!:!!.!!|||||||||.!.! !||||||:!! ysValLeuSerPhePheSerGlnSerSerValLeuSerTyrIleIleArgProLeuVal 27118 : GcgttttgtcatttttttctcaatctTCAGTTCTTTCCTATATCATAAGGCCACTTGTA : 27176 vulgar: gi|815927557|ref|XP_003494290.2| 3 153 . KQ414828.1 26057 27176 + 415 M 55 165 5 0 2 I 0 665 3 0 2 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26058 27176 415 + . gene_id 7 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 26058 26222 . + . KQ414828.1 exonerate:protein2genome:local exon 26058 26222 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 26223 26224 . + . intron_id 1 ; splice_site "GG" KQ414828.1 exonerate:protein2genome:local intron 26223 26891 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 26890 26891 . + . intron_id 0 ; splice_site "aa" KQ414828.1 exonerate:protein2genome:local cds 26892 27176 . + . KQ414828.1 exonerate:protein2genome:local exon 26892 27176 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 26058 27176 415 + . alignment_id 7 ; Query gi|815927557|ref|XP_003494290.2| ; Align 26058 4 165 ; Align 26892 59 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 391 Query range: 3 -> 153 Target range: 36168 -> 37287 4 : AsnMetSerLeuLysTyrHisLysAspValSerPheSerValAlaValPheTyrLeuLys : 23 !.!|||||||||||||||!.!:!!|||||||||.!!!.!:!!||| !|||!:!||| ! ThrMetSerLeuLysTyrArgGlnAspValSerIleLysLeuAlaAsnPhePheLeuTyr 36169 : ACTATGAGCTTGAAATATCGTCAAGACGTTTCCATTAAATTAGCCAACTTTTTTCTGTAT : 36226 24 : IleValGlyLeuTrpLeuSerThrSerLeuAlaGluLysTrpPheArgAsnAlaLeuVal : 43 :!!||||||!!!|||!!!:!!.!!!:!! ! !|||:!!||||||||||||||| !:!! ValValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIle 36227 : GTCGTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCGGCGATT : 36286 44 : ThrTyrThrValLeuAlaIleIlePheAsnMetTrpMetGlnLeu >>>> Target I : 59 !||||||:!!:!!.!!:!!.!!||| !||||||:!:|||||| 669 LeuTyrThrIleValThrValPhePheValMetTrpLeuGlnLeu-- 36287 : CTGTATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGag............. : 36336 60 : ntron 1 >>>> ArgGlyLeuTyrPheSerTrpGlyAspPheSerValSerThrTyrI : 74 bp ... |||||| ::: .....!|||!!!! !|||! +-AsnLysLeuTyrVal***PheLeuPheLeuGlnValCysMetTyrM 36337 : ............aaaacaaattatacgtctaatttctatttctacaGGTTTGCATGTACA : 37048 75 : leAlaCysAsnSerLeuGlyLeuPheMetAspLeuPheLysLeuLeuIleIlePheIleH : 94 !:||| !!|||.!!|||!.!:!! !!:!!|||:!!.!!|||:!!!!! !:!! !!:!!| etAlaGlyAsnGlyLeuAlaMetValLeuAspIleIleLysIlePheSerLeuValValH 37049 : TGGCAGGCAACGGTTTAGCCATGGTTTTGGATATAATCAAGATTTTCTCCCTAGTCGTAC : 37108 95 : isLysLysLysPheLeuTyrLeuIleValTyrMetGlnLysAsnPheTrpHisPheAsnT : 114 ||||||||||||||||| !||||||! !||||||||||||||||||! !|||!!.|||| isLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheLeuHisLeuAsnT 37109 : ACAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTCTTGCATTTGAACT : 37168 115 : yrAsnGlnTyrLysLysSerValLeuAlaAspAlaLysArgMetCysIleTyrPheValC : 134 ||:!!||||||:!!!!.||||||:!!|||.!.|||||||||||||||||||||||||||| yrAspGlnTyrGluAsnSerValIleAlaGlnAlaLysArgMetCysIleTyrPheValC 37169 : ACGATCAGTACGAGAATTCTGTTATCGCACAGGCGAAACGAATGTGCATTTACTTCGTGT : 37228 135 : ysValPheSerPheLeuSerGlnSerThrIlePheSerTyrIlePheMetProLeuIle : 153 |||||...||||||...|||||||||:!!:!!.!!||||||||| ! ! !||||||:!! ysValLeuSerPhePheSerGlnSerSerValLeuSerTyrIleValArgProLeuVal 37229 : GcgttttgtcatttttttctcaatctTCAGTTCTTTCCTATATAGTAAGGCCACTTGTA : 37287 vulgar: gi|815927557|ref|XP_003494290.2| 3 153 . KQ414828.1 36168 37287 + 391 M 55 165 5 0 2 I 0 665 3 0 2 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 36169 37287 391 + . gene_id 8 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 36169 36333 . + . KQ414828.1 exonerate:protein2genome:local exon 36169 36333 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 36334 36335 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local intron 36334 37002 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37001 37002 . + . intron_id 0 ; splice_site "aa" KQ414828.1 exonerate:protein2genome:local cds 37003 37287 . + . KQ414828.1 exonerate:protein2genome:local exon 37003 37287 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 36169 37287 391 + . alignment_id 8 ; Query gi|815927557|ref|XP_003494290.2| ; Align 36169 4 165 ; Align 37003 59 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 308 Query range: 292 -> 390 Target range: 28490 -> 28784 293 : TyrGlnAlaLeuLeuValLysLeuSerLeuSerTrpArgIleSerLeuValSerPheLeu : 312 |||.!.!.! !! ! !|||||||||!!!..!||||||:!!:!!|||!.!!!!|||! ! TyrAsnGlyThrGlnAsnLysLeuSerPheGluTrpArgValAlaLeuAlaCysPheSer 28491 : TATAATGGCACACAGAATAAGTTATCATTTGAATGGCGCGTTGCTTTGGCGTGCTTCTCG : 28548 313 : ThrThrAsnIleCysGlnLeuTrpIlePheThrTyrSerCysAsnAlaLeuIleGluGlu : 332 ! !|||..!:!: !!|||||||||!!:|||||||||||||||:!!..!:!!! ! !||| MetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGlu 28549 : ATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAA : 28608 333 : SerMetAsnThrAlaAsnAlaAlaTyrAlaAlaProTrpIleTyrLeuSerMetAspLys : 352 |||:!!|||! !|||.!.:!!!.!||||||!.!||||||||| !!||| !!||||||||| SerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLys 28609 : AGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaa : 28668 353 : PheGlyGluMetThrArgLysAspLeuGlnLeuValLeuMetArgSerArgArgAlaCys : 372 ||||||:::::: !|||||||||||||||:!!:!!:!!:!!|||:!!|||||| !!! ! PheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSer 28669 : tttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCC : 28728 373 : TyrLeuThrAlaCysGlyPhePheProIleSerLeuGluThrPheThrLysIle : 390 ! !||||||||||||||||||||| !!||||||||||||||||||||||||:!! SerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 28729 : TCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 28784 vulgar: gi|815927557|ref|XP_003494290.2| 292 390 . KQ414828.1 28490 28784 + 308 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28491 28784 308 + . gene_id 9 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28491 28784 . + . KQ414828.1 exonerate:protein2genome:local exon 28491 28784 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28491 28784 308 + . alignment_id 9 ; Query gi|815927557|ref|XP_003494290.2| ; Align 28491 293 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 259 Query range: 191 -> 302 Target range: 10840 -> 11179 192 : LeuTyrGlnValGlyValCysTyrLeuCysValAspAsnIlePheCysIleMetCysLeu : 211 |||||| ..!|||:!!||||||!!!||| !!||||||||||||||||||||| !!:!! LeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerVal 10841 : CTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTG : 10898 212 : HisValAlaSerGlnPheArgIleLeuGlnTyrArgIleAlaAsnValLeuSerLeuArg : 231 |||:!!::!.!!||||||||||||||||||||||||:!:.!!!!.:!!! !..!:!!!:! HisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGln 10899 : CATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAA : 10958 232 : AspLysVal<-><->LysPheAspGlnAspThrAsnLeuAspSerSerAspGluPheTyr : 249 !!:!!:!! ||| :::..!..! !|||!!!!!! !..!! !||| TyrGlnIleSerGluLysAsnMetGluSerValLeuGluAspCysThrArgArgSerTyr 10959 : TATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGTAGATCTTAC : 11018 250 : AlaIlePheArgLysCysIleGlnGlnHisGlnAlaLeuIleArgPheCysThrThrLeu : 269 ! !! !|||!:!!..! !:!!!:!|||||||||.!!|||||| !!:!! ! !! !||| GluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLysLeu 11019 : GAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAGCTT : 11078 270 : GluGluIlePheThrValIleIleLeuGlyGlnValLeuThrPheSerIleLeuIleCys : 289 |||.!.:!!!:!||| !||||||||||||||||||||| !||||||:!:||||||||| GluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIleCys 11079 : GAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATTTGC : 11138 290 : PheValGlyTyrGlnAlaLeuLeuValLysLeuSerLeu : 302 .!! !!||||||||| !|||||||||!..:!!|||||| LeuPheGlyTyrGlnIleLeuLeuValSerIleSerLeu 11139 : CTCTTTGGTTATCAGATATTATTGGTTAGTATTTCACTT : 11179 vulgar: gi|815927557|ref|XP_003494290.2| 191 302 . KQ414828.1 10840 11179 + 259 M 43 129 G 0 6 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10841 11179 259 + . gene_id 10 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 10841 11179 . + . KQ414828.1 exonerate:protein2genome:local exon 10841 11179 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10841 11179 259 + . alignment_id 10 ; Query gi|815927557|ref|XP_003494290.2| ; Align 10841 192 129 ; Align 10976 235 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 219 Query range: 318 -> 410 Target range: 12532 -> 13167 319 : LeuTrpIlePheThrTyrSerCysAsnAlaLeuIleGluGluSerMetAsnThrAlaAsn : 338 |||!::!!:|||||||||||||||||| !:!!||||||:!!||| |||! !||| ! LeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAlaPhe 12533 : TTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCTTTT : 12590 339 : AlaAlaTyrAlaAlaProTrpIleTyrLeuSerMetAspLysPheGlyGluMetThrArg : 358 |||||||||:!!|||! !|||! !:!! !!|||:!!||| !|||:!!! ! !||| AlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeuArg 12591 : GCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTACGG : 12650 359 : LysAspLeuGlnLeuValLeuMetArgSerArgArgAlaCysTyrLeuThrAlaCysGly : 378 ! |||||| !:!!|||:!! !||||||||||||!.!|||! !||||||||| !||| HisAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsnGly 12651 : CATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATGGA : 12710 379 : PhePheProIleSerLeuGluThrPheThr--{L} >>>> Target Intron 1 >> : 389 |||||||||:!:||||||||||||!:!|||##{:} 357 bp PhePheProValSerLeuGluThrTyrThr##{G}++ 12711 : TTTTTCCCTGTGTCCTTAGAAACTTATACTAC{G}gt....................... : 12748 390 : >> {ys}IleMetSerSerAlaMetSerTyrPheThrIleLeuLysGlnArgThrValA : 407 {!!}|||:::|||!!!||| !||||||||||||:!!|||!:!.!.!.!..!! !| +-{lu}IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnValGluA 12749 : ..ac{ag}attttgAGTACCGCGGCGTCGTACTTCACATTATTGAGAAATAACGTAGAAG : 13156 408 : spThrIleGlu : 410 ||..!:!!:!! spValValLys 13157 : ATGTAGTTAAA : 13167 vulgar: gi|815927557|ref|XP_003494290.2| 318 410 . KQ414828.1 12532 13167 + 219 M 70 210 F 0 2 S 0 1 5 0 2 I 0 353 3 0 2 S 1 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 12533 13167 219 + . gene_id 11 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 12533 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12533 12745 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13102 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 13101 13102 . + . intron_id 0 ; splice_site "ac" KQ414828.1 exonerate:protein2genome:local cds 13103 13167 . + . KQ414828.1 exonerate:protein2genome:local exon 13103 13167 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 12533 13167 219 + . alignment_id 11 ; Query gi|815927557|ref|XP_003494290.2| ; Align 12533 319 210 ; Align 13105 390 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 3 -> 76 Target range: 15097 -> 15316 4 : AsnMetSerLeuLysTyrHisLysAspValSerPheSerValAlaValPheTyrLeuLys : 23 :!!|||||| ! ! ! ! |||:!!|||.!!|||:!!.!! ! !!!:!:!!||| AspMetSerSerPheThrThrAspAspIleSerIleSerLeuThrSerValPheMetLys 15098 : GATATGAGTAGTTTCACCACCGATGACATATCAATCAGCCTGACGTCCGTTTTCATGAAG : 15155 24 : IleValGlyLeuTrpLeuSerThrSerLeuAlaGluLysTrpPheArgAsnAlaLeuVal : 43 |||||||||||||||:!!:!!:!!!:!! ! !|||:!! ! ! |||||| ! !:!! IleValGlyLeuTrpMetAlaSerAsnArgPheGluGlnArgValArgAsnIleThrLeu 15156 : ATCGTTGGACTGTGGATGGCGTCGAACCGTTTCGAGCAACGAGTACGAAATATCACGCTG : 15215 44 : ThrTyrThrValLeuAlaIleIlePheAsnMetTrpMetGlnLeuArgGlyLeuTyrPhe : 63 !||||||:!!:!!||||||:!!||| !:!!|||!!:|||:!!! !! !||||||!:! CysTyrThrLeuIleAlaIleLeuPheAlaLeuTrpIleGlnMetThrAspLeuTyrTyr 15216 : TGTTACACGCTGATCGCGATTCTCTTCGCCCTGTGGATACAAATGACGGATTTGTATTAC : 15275 64 : SerTrpGlyAspPheSerValSerThrTyrIleAlaCys : 76 |||||||||||||||.!!||||||.!! ! !||| SerTrpGlyAspPheGlyValSerAlaArgGlyIleCys 15276 : TCGTGGGGAGATTTTGGTGTAAGTGCGAGGGGAATTTGT : 15316 vulgar: gi|815927557|ref|XP_003494290.2| 3 76 . KQ414828.1 15097 15316 + 171 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15098 15316 171 + . gene_id 12 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 15098 15316 . + . KQ414828.1 exonerate:protein2genome:local exon 15098 15316 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15098 15316 171 + . alignment_id 12 ; Query gi|815927557|ref|XP_003494290.2| ; Align 15098 4 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 151 -> 193 Target range: 27339 -> 27465 152 : LeuIleSerAsnIleGlyLysAsnLysSerAspArgValProIlePheHisMetHisLeu : 171 :::::::::|||:!!|||||||||:!!|||||||||! !! !|||||| !!||| !!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPhe 27340 : attttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTC : 27397 172 : AspLeuProLeuAsnValSerProTyrTyrGluMetThrTyrLeuIleGlnAlaLeuThr : 191 ||||||||||||::!|||!!!||||||||||||:::||||||:!!||||||!.!||| !! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 27398 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 27457 192 : LeuTyr : 193 :!!!:! IlePhe 27458 : ATTTTC : 27465 vulgar: gi|815927557|ref|XP_003494290.2| 151 193 . KQ414828.1 27339 27465 + 139 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27340 27465 139 + . gene_id 13 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27340 27465 . + . KQ414828.1 exonerate:protein2genome:local exon 27340 27465 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27340 27465 139 + . alignment_id 13 ; Query gi|815927557|ref|XP_003494290.2| ; Align 27340 152 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1071 Query range: 25 -> 427 Target range: 15115 -> 19909 26 : ThrLysAspPheAlaLeuLeuMetThrGlyPheLeuMetLysIleValGlyLeuTrpLeu : 45 ||| ! |||.!.:!!:!! !:!!|||..! !!!!!|||||||||||||||||||||:!! ThrAspAspIleSerIleSerLeuThrSerValPheMetLysIleValGlyLeuTrpMet 15116 : ACCGATGACATATCAATCAGCCTGACGTCCGTTTTCATGAAGATCGTTGGACTGTGGATG : 15173 46 : ThrLysAsnLysGluGluGluArgThrArgGlnLeuThrLeuMetTyrThrValValAla : 65 .!!..!|||::: |||:!!|||..!|||.!.:!!|||||| ||||||:!!:!!||| AlaSerAsnArgPheGluGlnArgValArgAsnIleThrLeuCysTyrThrLeuIleAla 15174 : GCGTCGAACCGTTTCGAGCAACGAGTACGAAATATCACGCTGTGTTACACGCTGATCGCG : 15233 66 : IleLeuPheGlyValTrpValGlnPheArgAspPheTyrTyrSerTrpProAsnPheGly : 85 |||||||||!.!:!!|||:!!|||.!.! !|||!!.|||||||||||| !:!!|||||| IleLeuPheAlaLeuTrpIleGlnMetThrAspLeuTyrTyrSerTrpGlyAspPheGly 15234 : ATTCTCTTCGCCCTGTGGATACAAATGACGGATTTGTATTACTCGTGGGGAGATTTTGGT : 15293 86 : >>>> Target Intron 1 >>>> AspCysAlaTyrThrAlaCysAsnIleLeuC : 96 891 bp ! !||| !|||||||||||||||||||||! ++ ++AlaCysLeuTyrThrAlaCysAsnIleLeuS 15294 : gt.........................agGCCTGTTTATATACTGCATGCAACATTTTAT : 16217 97 : ysLeuIleMetValLeuLeuLysLeuSerValValPheIleHisLysLysGluPheIleG : 116 |||! !!!: !!!!||||||:!! !|||:!!.!! !||||||...:::|||.... erLeuThrIleProPheLeuLysIleLeuValLeuLeuAlaHisLysAsnAspPhePheH 16218 : CGTTAACAATACCGTTTCTCAAGATACTCGTCTTGCTTGCAcacaaaaatgatttttttc : 16277 117 : luLeuLeuValTyrThrHisLysAsnPheTrpHisThrAsnTyrSerTyrAsnGluLeuL : 136 ..|||::::!!:!! !!!.::!.!.|||! !|||.!!:!!|||..! !! !!||| ! isLeuIleLeuHisLeuGlnArgGluPheLeuHisAlaAspTyrAspAspTyrGluLysL 16278 : atttgattcTGCACCTACAACGAGAATTCTTGCATGCAGATTACGACGACTACGAGAAAA : 16337 137 : euLeuLeuGlnAsnCysArgLysIleSerIleValCysIleSerLeuIleAsnValCysA : 156 !:!!|||! ..!|||!:!::: !!!!! ! !!! !:!!!!!!!!.!!!..:!!! !. ysIleLeuLeuGlyCysGlnArgGlnCysThrPhePheValCysPhePheThrLeuPheT 16338 : AGATTTTGCTCGGTTGCCAACGTCAATGTACCTTCTTCGTTTGTTTCTTCACACTTTTCA : 16397 157 : laGlnGlyThrValPheGlyTyrValLeuThrProIleVal{G} >>>> Target In : 170 !!:!!|||||||||.!!..!|||:!!:!!!.!|||:!!:!!{!} 1386 hrLysGlyThrValIleSerTyrIleValAsnProLeuIle{A}++ 16398 : CTAAAGGAACTGTTATCTCGTACATCGTTAATCCGCTTATT{G}gt.............. : 16442 171 : tron 2 >>>> {lu}AsnIleGlyArgAsnTyrSerAspArgValLeuProPheArgM : 185 bp { !}|||||||||:::||| |||!!:|||:!!|||||||||!.!| ++{la}AsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnM 16443 : ...........ag{ca}aatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATA : 17870 186 : etTrpLeuAspLeuProLeuThrValThrProTyrTyrGluIleLeuPheValLeuGln : 205 |||||:!!:!!|||||||||:!!:!!|||||||||||||||||| ||| |||||| etTrpValAsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln+ 17871 : TGTGGGTCAACTTGCCATTATCAATGACGCCATATTACgaaataactttttcattaCAGg : 17930 206 : >>>> Target Intron 3 >>>> ValLeuSerLeuTyrHisValGlyIleCysTy : 215 110 bp ||||||||||||||||||:!!|||:!: !!|| + ++ValLeuSerLeuTyrHisIleGlyValSerTy 17931 : t.........................aggtTCTGTCTCTGTACCATATTGGCGTGAGTTA : 18070 216 : rIleCysPheAspAsnLeuLeuCysLeuIleAsnLeuHisAlaAlaThrGlnPheArgIl : 235 |.!!||||||||||||...||||||::!!!:|||||||||||||||||||||||||||:! rPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgVa 18071 : TTTCTgcttcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGT : 18130 236 : eLeuGlnTyrArgLeuLeuTyrLeuGlyGluThrIleGluLysGlnProAsnGluTyrAl : 255 !||||||||||||:!! ! !!:!! !!!: !! !::|||::: ...||| lLeuGlnTyrArgMetAlaAsnMetThrAspLeuLysAspLysGluArgLysGluArgAs 18131 : ATTGCAATACCGAATGGCGAATATGACCGATTTAAAGGacaaagagaggaaagagagaaa : 18190 256 : aIleLysGluThrLeuProSerAsn<->TyrLeuLysAsnTyrHisThrValPheLysCy : 274 :::||| !!:!:!! !||| !:! !! !.!.! !:!!!.!|||.!!||| nMetLysThrSerValSerSerAlaCysPheAlaThrGluCysTyrAsnValLeuLysAs 18191 : tatgaAGACAAGTGTGAGTTCGGCGTGCTTTGCAACAGAATGTTACAACGTTCTCAAAGA : 18250 275 : sCysValArgGluHisGlnAspArgIleAsnTyrCysGlnArgLeuAsnAsnIlePheTh : 294 !! !:!!|||:!!||||||:!!! !||| !||||||.!.!:!|||.!.!!.:!:|||!. pTyrIleArgGlnHisGlnAsnLeuIleAlaTyrCysAsnLysLeuGluLysValPheAs 18251 : TTATATCAGACAGCATCAGAACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGTTCAA : 18310 295 : rTyrIleValLeuGlyHisIleValValPheSerLeuLeuLeuCysLeuValGlyPheGl : 314 ! !||||||||||||!!.:!::!!:!!||||||:!!|||:!!||||||! !|||||||| nIleIleValLeuGlyGlnLeuLeuMetPheSerMetLeuIleCysLeuAspGlyPheGl 18311 : TATCATTGTTCTGGGGCAATTGTTAATGTTCAGCATGTTGATCTGTCTCGATGGATTTCA : 18370 315 : nValLeuMet >>>> Target Intron 4 >>>> AlaAsnSerProProThrArg : 324 |:!!|||||| 975 bp ||||||!!!||| !!! !! ! nIleLeuMet++ ++AlaAsnThrProThrArgThr 18371 : GATACTTATGgt.........................agGCAAATACACCTACCAGAACC : 19375 325 : ArgLeuIlePheValPheHisIleValGlySerSerSerGlnLeuLeuLeuPheThrTyr : 344 ||||||||||||:!!|||||||||! !!.!!!!! !!!!|||||||||:!!||||||||| ArgLeuIlePheIlePheHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyr 19376 : CGACTGATTTTCATCTTTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTAC : 19435 345 : SerCysAspThrLeuIleArgGluSerThrAsnIleGlyThrAlaValTyrSerGlyPro : 364 ||||||||| !:!!|||||||||||||||!:!! !!.! !|||||||||||||||||| SerCysAspCysIleIleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyPro 19436 : AGCTGCGACTGCATCATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCC : 19495 365 : TrpThrHisLeuThrMetAspLysIleGlyLysLeuLeuArgLysAspLeuThrMetIle : 384 ||||||! !||| !!|||..! ! !||||||:!!:!!||||||||||||! !:!::!! TrpThrLeuLeuProMetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuVal 19496 : TGGACACTTTTACCAATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTT : 19555 385 : IleLeuArgSerSerLysProCysCysLeuThrAlaSerGlyPhePheProValSerLeu : 404 |||:!!||||||||| !||||||||||||||||||!!!||||||||| !||||||||| IleMetArgSerSerValProCysCysLeuThrAlaArgGlyPhePheValValSerLeu 19556 : ATCATGAGATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTA : 19615 405 : GluThrCysThrLys >>>> Target Intron 5 >>>> ValLeuSerThrAlaM : 415 ||||||! !||| ! 223 bp ||||||||||||||| GluThrTyrThrGly++ ++ValLeuSerThrAlaA 19616 : GAAACGTACACAGGGgt.........................agGTTTTAAGCACCGCAG : 19871 416 : etSerTyrPheThrLeuMetArgGlnSerPheThrAsn : 427 |||||||||||||||:!!!:!|||!!!! !||| laSerTyrPheThrLeuLeuLysGlnArgSerGluAsn 19872 : CCTCATACTTTACGTTGCTGAAGCAAAGATCAGAGAAT : 19909 vulgar: gi|350397292|ref|XP_003484830.1| 25 427 . KQ414828.1 15115 19909 + 1071 M 60 180 5 0 2 I 0 887 3 0 2 M 84 252 S 0 1 5 0 2 I 0 1382 3 0 2 S 1 2 M 34 102 5 0 2 I 0 106 3 0 2 M 59 177 G 0 3 M 54 162 5 0 2 I 0 971 3 0 2 M 92 276 5 0 2 I 0 219 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15116 19909 1071 + . gene_id 1 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 15116 15295 . + . KQ414828.1 exonerate:protein2genome:local exon 15116 15295 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 15296 15297 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 15296 16186 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 16185 16186 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 16187 16439 . + . KQ414828.1 exonerate:protein2genome:local exon 16187 16439 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 16440 16441 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 16440 17825 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 17824 17825 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 17826 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17826 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 2 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18381 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19909 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19909 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15116 19909 1071 + . alignment_id 1 ; Query gi|350397292|ref|XP_003484830.1| ; Align 15116 26 180 ; Align 16187 86 252 ; Align 17828 171 102 ; Align 18040 205 177 ; Align 18220 264 162 ; Align 19357 318 276 ; Align 19856 410 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 646 Query range: 170 -> 423 Target range: 2882 -> 6459 171 : AsnIleGlyArgAsnTyrSerAspArgValLeuProPheArgMetTrpLeuAspLeuProLe : 191 !::||||||:::||| |||||||||:!!||| ! !!!.!.!.|||:!!|||||||||:! SerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuProIl 2883 : AgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCCGAT : 2943 192 : uThrValThrProTyrTyrGluIleLeuPheValLeuGln >>>> Target Intron 1 : 205 !|||:!!||||||||||||||||||||||||...:!!||| 406 bp eThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2944 : AACCATCACACCATactatgaaatattatttacgaTACAGgt.................... : 2987 206 : >>>> ValLeuSerLeuTyrHisValGlyIleCysTyrIleCysPheAspAsnLeuLeuC : 223 :!!!!!! !:!! :!!||| !!||| !!|||:!!|||.!!||||||!!!|||| ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheLeuC 2988 : .....agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTCTGT : 3445 224 : ysLeuIleAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuLeuTyrLeu : 243 ||:!!||||||||||||.!!|||||||||||||||||||||||||||||||||! ! !!:!! ysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnVal 3446 : GCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAATGTG : 3505 244 : GlyGluThrIleGluLysGlnProAsnGluTyrAlaIleLysGluThrLeuProSerAsnTy : 264 !!! .!!! !|||:::... ... |||...::: |||||||||! CysGlyAlaAsnGluArgSerAspLys---------IleSerLysLysThrProSerAsnSe 3506 : TGCGGTGCAAACGAACGTAgcgataaa---------atttcgaaaaaaacaCCGTCCAATTC : 3559 265 : rLeuLysAsnTyrHisThrValPheLysCysCysValArgGluHisGlnAspArgIleAsnT : 285 !:!! !||| .!! !|||||| !|||:!!!:!:!!||||||! ! !|||.!.| rAspGluCysTyr---AlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluT 3560 : GGACGAATGCTAC---GCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAAT : 3619 286 : yrCysGlnArgLeuAsnAsnIlePheThrTyrIleValLeuGlyHisIleValValPheSer : 305 |||||.!.!:!|||.!..!.:!:||| ! .!!||||||!.!!!.:!::!!:!!|||||| yrCysAsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSer 3620 : ACTGTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGT : 3679 306 : LeuLeuLeuCysLeuValGlyPheGlnValLeuMet >>>> Target Intron 2 >>> : 318 ||||||:!!||||||! !|||!:! :!!:!!||| 457 bp LeuLeuMetCysLeuAspGlyTyr---LeuValMet++ 3680 : TTGTTAATGTGCCTCGATGGATAT---TTGGTGATGgt........................ : 3717 319 : > AlaAsnSerProProThrArgArgLeuIlePheValPheHisIleValGlySerSerSe : 337 ! !:!!!!!||| !! !!:!||||||! !|||:!!||||||:!!..!|||!!! !!! ++GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCy 3718 : .agGAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTG : 4229 338 : rGlnLeuLeuLeuPheThrTyrSerCysAspThrLeuIleArgGluSerThrAsnIleGlyT : 358 !|||||||||:!!|||||||||||||||||| !||||||||||||||| !|||:!:!.!! sGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaA 4230 : CCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCA : 4292 359 : hrAlaValTyrSerGlyProTrpThrHisLeuThrMetAspLysIleGlyLysLeuLeuArg : 378 .!|||:!!|||..! !! !!|||! !|||||| !!||||||!:! !|||::!:!!|||||| snAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArg 4293 : ATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGA : 4352 379 : LysAspLeuThrMetIleIleLeuArgSerSerLysProCysCysLeuThrAlaSerGlyPh : 399 ||||||||||||.!.:!!||| !||||||!!! !||||||||||||||||||!!!||||| LysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPh 4353 : AAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATT : 4415 400 : ePheProValSerLeuGluThrCysThrLys >>>> Target Intron 3 >>>> Va : 410 ||||||||||||||||||||||! !|||..! 1970 bp || ePheProValSerLeuGluThrTyrThrSer++ ++Va 4416 : CTTCCCTGTGTCACTGGAAACGTACACTTCGgt.........................agGT : 6418 411 : lLeuSerThrAlaMetSerTyrPheThrLeuMetArgGln : 423 |:!!|||||||||:!!|||||||||||||||:!:|||||| lIleSerThrAlaValSerTyrPheThrLeuLeuArgGln 6419 : TATAAGTACAGCAGTGTCGTACTTCACACTGTTAAGGCAA : 6459 vulgar: gi|350397292|ref|XP_003484830.1| 170 423 . KQ414828.1 2882 6459 + 646 M 34 102 5 0 2 I 0 402 3 0 2 M 48 144 G 3 0 M 13 39 G 1 0 M 44 132 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2883 6459 646 + . gene_id 2 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2883 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2883 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 0 ; deletions 5 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6459 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6459 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2883 6459 646 + . alignment_id 2 ; Query gi|350397292|ref|XP_003484830.1| ; Align 2883 171 102 ; Align 3391 205 144 ; Align 3535 256 39 ; Align 3574 270 132 ; Align 3706 315 9 ; Align 4172 318 276 ; Align 6418 410 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 610 Query range: 167 -> 424 Target range: 32386 -> 34304 168 : IleValGluAsnIleGlyArgAsnTyrSerAspArgValLeuProPheArgMetTrpLeu : 187 |||::: |||:!!|||!:!||| ! |||||||||! !! ! !!:! !||||||||| IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 32387 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 32444 188 : AspLeuProLeuThrValThrProTyrTyrGluIleLeuPheValLeuGln >>>> Ta : 205 ||||||||||||:!!||||||||||||||||||||| ::!:!!:!!||| AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGln++ 32445 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGgt....... : 32500 206 : rget Intron 1 >>>> ValLeuSerLeuTyrHisValGlyIleCysTyrIleCysP : 218 307 bp !.!||||||:!!|||!!.||||||:!:||||||:!!|||| ++AlaLeuSerValTyrGlnValGlyValCysTyrLeuCysP 32501 : ..................agGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCT : 32844 219 : heAspAsnLeuLeuCysLeuIleAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnT : 238 ||||||||:::... :::::: !||||||!.!||| !||||||||||||||||||| heAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnT 32845 : ttgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAAT : 32904 239 : yrArgLeuLeuTyrLeuGlyGluThrIleGluLysGlnProAsnGluTyrAlaIleLysG : 258 |||||:!! ! !!:!!..!! !! !|||! ! ! !!:!.!. !!!. yrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerAsn------AspAsnT 32905 : ACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAGAGCAAT------GATAATA : 32958 259 : luThrLeuProSerAsnTyrLeuLysAsnTyrHisThrValPheLysCysCysValArgG : 278 !!:! ! !!..! |||! !:!!!!.! !:!!! ! !|||||| !|||:!!!:!: hrSerThrAlaGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnG 32959 : CAAGCACGGCTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAAC : 33018 279 : luHisGlnAspArgIleAsnTyrCysGlnArgLeuAsnAsnIlePheThrTyrIleValL : 298 !!||||||! ! |||...:::|||::: |||.!..!.:!!|||||| ||||||| lnHisGlnAlaLeuIleGluPheCysGluIleLeuGluGluValPheThrValIleValL 33019 : AACATCAGGCACTaattgaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTAC : 33078 299 : euGlyHisIleValValPheSerLeuLeuLeuCysLeuValGlyPheGlnValLeuMet : 318 |||||!!.:!!:!!:!!||||||:!!:!!:!!|||!!!!.!|||!:!:!!||||||:!! euGlyGlnValLeuMetPheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeu+ 33079 : TCGGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGg : 33138 319 : >>>> Target Intron 2 >>>> AlaAsnSerProProThrArgArgLeuIlePh : 328 406 bp !!..! !||| ! ! !|||:!! !|| + ++IleThrLeuProPheGluSerArgValAlaPh 33139 : t.........................agATAACGTTACCATTTGAATCGCGCGTTGCTTT : 33574 329 : eValPheHisIleValGlySerSerSerGlnLeuLeuLeuPheThrTyrSerCysAspTh : 348 |..!! ! !:!::!! !.!! !|||||||||! !:!!|||||||||||||||:!! eThrCysPheLeuIleThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAsnCy 33575 : CACGTGCTTCTTGATTACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCAATTG : 33634 349 : rLeuIleArgGluSerThrAsnIleGlyThrAlaValTyrSerGlyProTrpThrHisLe : 368 !:!!! !! !|||||| !||||||!.! !:!!||||||:!!|||||||||! !:!!|| sIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLe 33635 : CATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTT : 33694 369 : uThrMetAspLysIleGlyLysLeuLeuArgLysAspLeuThrMetIleIleLeuArgSe : 388 | !!|||||||||...|||||||||||||||||||||||| !:!!:!!|||||||||:! uProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAl 33695 : ACCAATggataaatttggaaaactgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGC : 33754 389 : rSerLysProCysCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrCysTh : 408 !!!!::!|||! !..!|||||||||!!!||||||||| !!:!!!!!|||||||||! !|| aArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleThrLeuGluThrPheTh 33755 : GAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTAC : 33814 409 : rLys >>>> Target Intron 3 >>>> ValLeuSerThrAlaMetSerTyrPhe : 418 |||| 440 bp :!!:!!||||||:!!|||||||||||| rLys++ ++IleMetSerThrSerMetSerTyrPhe 33815 : TAAGgt.........................agATCATGAGTACATCAATGTCGTATTTC : 34284 419 : ThrLeuMetArgGlnSer : 424 ||||||:!:!:!|||||| ThrLeuLeuLysGlnSer 34285 : ACCCTACTAAAACAAAGT : 34304 vulgar: gi|350397292|ref|XP_003484830.1| 167 424 . KQ414828.1 32386 34304 + 610 M 37 111 5 0 2 I 0 303 3 0 2 M 49 147 G 2 0 M 62 186 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32387 34304 610 + . gene_id 3 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32387 32497 . + . KQ414828.1 exonerate:protein2genome:local exon 32387 32497 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32498 32499 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32498 32804 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32803 32804 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32805 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32805 33137 . + . insertions 0 ; deletions 2 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 3 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34304 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34304 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32387 34304 610 + . alignment_id 3 ; Query gi|350397292|ref|XP_003484830.1| ; Align 32387 168 111 ; Align 32805 205 147 ; Align 32952 256 186 ; Align 33544 318 276 ; Align 34260 410 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 465 Query range: 204 -> 424 Target range: 10831 -> 13149 205 : ValLeuSerLeuTyrHisValGlyIleCysTyrIleCysPheAspAsnLeuLeuCysLeu : 224 :!!! !.!!|||||| !..!||||||||||||.!!||||||||||||:!!!!!|||:!! IleSerGlyLeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIle 10832 : ATTTCAGGACTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATC : 10889 225 : IleAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuLeuTyrLeuGly : 244 !!:!:!:!!||| !::! !||||||||||||||||||||||||||| ! ! |||..! MetSerValHisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSer 10890 : ATGAGCGTGCATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCC : 10949 245 : GluThrIleGluLysGlnProAsnGluTyrAlaIleLysGluThrLeuProSerAsnTyr : 264 !!: :!!:!! ! ||| !!::||| ::::::.....!||| !..! ! Asp---ValGlnTyrGlnIleSerGluLysAsnMetGluSerValLeuGluAspCysThr 10950 : GAC---GTACAATATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACA : 11006 265 : LeuLysAsnTyrHisThrValPheLysCysCysValArgGluHisGlnAspArgIleAsn : 284 ! !!:!::!|||.!.! ! |||||| !!! !||||||:!!|||||| !|||:!! ArgArgSerTyrGluLys---PheLysSerTyrValArgGlnHisGlnThrLeuIleAsp 11007 : CGTAGATCTTACGAGAAA---TTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGAT : 11063 285 : TyrCysGlnArgLeuAsnAsnIlePheThrTyrIleValLeuGlyHisIleValValPhe : 304 |||! !:!!!:!|||.!.:!!:!!!:!||| ! |||:!!||||||!!.:!::!!:!!||| TyrTyrGluLysLeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPhe 11064 : TATTACGAGAAGCTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTC : 11123 305 : SerLeuLeuLeuCysLeuValGlyPheGlnValLeuMetAlaAsn<->SerProProThr : 323 |||:!!|||:!!|||||| !!|||!:!|||:!!|||:!!!.!!:! |||! !||| !! SerValLeuIleCysLeuPheGlyTyrGlnIleLeuLeuValSerIleSerLeuProPro 11124 : AGTGTGTTAATTTGCCTCTTTGGTTATCAGATATTATTGGTTAGTATTTCACTTCCTCCA : 11183 324 : {A} >>>> Target Intron 1 >>>> {rg}ArgLeuIlePheValPheHisIle : 332 {|} 1302 bp {||}||| !||||||:!!|||! !||| {A}-+ +-{rg}ArgSerIlePheMetPheLeuIle 11184 : {A}ct.........................aa{GG}CGCAGTATTTTCATGTTCCTCATA : 12512 333 : ValGlySerSerSerGlnLeuLeuLeuPheThrTyrSerCysAspThrLeuIleArgGlu : 352 !|||:!!! ! ! !|||!!!:!!|||||||||||||||:!!! !:!!|||..!:!! CysGlyAlaMetValLeuLeuPheMetPheThrTyrSerCysAsnMetValIleGluGln 12513 : TGTGGCGCCATGGTTTTATTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAA : 12572 353 : SerThrAsnIleGlyThrAlaValTyrSerGlyProTrpThrHisLeuThrMetAspLys : 372 ||| !||||||!.! !|||!.!||||||!.!! !|||||| !:!! !!|||:!!||| SerAspAsnIleAlaPheAlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLys 12573 : AGCGATAATATTGCTTTTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAA : 12632 373 : IleGlyLysLeuLeuArgLysAspLeuThrMetIleIleLeuArgSerSerLysProCys : 392 ! !|||||| !|||||| ! ||||||! !|||:!!||| !||||||!!!::! !||| ThrGlyLysLysLeuArgHisAspLeuIleMetValIleGlyArgSerArgArgValCys 12633 : ACTGGCAAAAAGCTACGGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGT : 12692 393 : CysLeuThrAlaSerGlyPhePheProValSerLeuGluThrCysThr--{L} >>>> : 409 ||||||||||||!:!|||||||||||||||||||||||||||! !|||##{:} CysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThr##{G}++ 12693 : TGTCTGACTGCGAATGGATTTTTCCCTGTGTCCTTAGAAACTTATACTAC{G}gt..... : 12748 410 : Target Intron 2 >>>> {ys}ValLeuSerThrAlaMetSerTyrPheThrLeuM : 421 357 bp {!!}:::|||||||||||| !|||||||||||||||: +-{lu}IleLeuSerThrAlaAlaSerTyrPheThrLeuL 12749 : ....................ac{ag}attttgAGTACCGCGGCGTCGTACTTCACATTAT : 13138 422 : etArgGlnSer : 424 !!|||.!.!:! euArgAsnAsn 13139 : TGAGAAATAAC : 13149 vulgar: gi|350397292|ref|XP_003484830.1| 204 424 . KQ414828.1 10831 13149 + 465 M 41 123 G 1 0 M 24 72 G 1 0 M 48 144 G 0 3 M 4 12 S 0 1 5 0 2 I 0 1298 3 0 2 S 1 2 M 84 252 F 0 2 S 0 1 5 0 2 I 0 353 3 0 2 S 1 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10832 13149 465 + . gene_id 4 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 10832 11186 . + . KQ414828.1 exonerate:protein2genome:local exon 10832 11186 . + . insertions 3 ; deletions 2 KQ414828.1 exonerate:protein2genome:local splice5 11187 11188 . + . intron_id 1 ; splice_site "CT" KQ414828.1 exonerate:protein2genome:local intron 11187 12488 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12487 12488 . + . intron_id 0 ; splice_site "AA" KQ414828.1 exonerate:protein2genome:local cds 12489 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12489 12745 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13102 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13101 13102 . + . intron_id 1 ; splice_site "ac" KQ414828.1 exonerate:protein2genome:local cds 13103 13149 . + . KQ414828.1 exonerate:protein2genome:local exon 13103 13149 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10832 13149 465 + . alignment_id 4 ; Query gi|350397292|ref|XP_003484830.1| ; Align 10832 205 123 ; Align 10955 247 72 ; Align 11027 272 144 ; Align 11174 320 12 ; Align 12491 325 252 ; Align 13105 410 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 285 Query range: 336 -> 423 Target range: 28562 -> 29233 337 : SerGlnLeuLeuLeuPheThrTyrSerCysAspThrLeuIleArgGluSerThrAsnIle : 356 |||||||||! !:!!|||||||||||||||||| !:!!! !! !|||||| !|||||| SerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIle 28563 : AGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATC : 28620 357 : GlyThrAlaValTyrSerGlyProTrpThrHisLeuThrMetAspLysIleGlyLysLeu : 376 !.! !:!!||||||:!!|||||||||! !:!!||| !!|||||||||...||||||||| AlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeu 28621 : GCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaactg : 28680 377 : LeuArgLysAspLeuThrMetIleIleLeuArgSerSerLysProCysCysLeuThrAla : 396 ||||||||||||||| !:!!:!!|||||||||:!!!!!::!|||! !! !||||||||| LeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThrAla 28681 : CTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCC : 28740 397 : SerGlyPhePheProValSerLeuGluThrCysThrLys >>>> Target Intron : 410 !!!||||||||| !!:!!||||||||||||! !|||||| 410 bp CysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 28741 : TGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt................... : 28784 411 : 1 >>>> ValLeuSerThrAlaMetSerTyrPheThrLeuMetArgGln : 423 :!!:!!||||||:!!||||||||||||||||||:!:!:!||| ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGln 28785 : ......agATCATGAGTACATCAATGTCGTATTTCACATTATTAAAACAA : 29233 vulgar: gi|350397292|ref|XP_003484830.1| 336 423 . KQ414828.1 28562 29233 + 285 M 73 219 5 0 2 I 0 406 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28563 29233 285 + . gene_id 5 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 28563 28781 . + . KQ414828.1 exonerate:protein2genome:local exon 28563 28781 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 28782 28783 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 28782 29191 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 29190 29191 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 29192 29233 . + . KQ414828.1 exonerate:protein2genome:local exon 29192 29233 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28563 29233 285 + . alignment_id 5 ; Query gi|350397292|ref|XP_003484830.1| ; Align 28563 337 219 ; Align 29192 410 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 267 Query range: 167 -> 319 Target range: 22307 -> 23064 168 : IleValGluAsnIleGlyArgAsnTyrSerAspArgValLeuProPheArgMetTrpLeu : 187 |||::: |||:!!|||!:!||| ! |||||||||! !! ! !!:! !||||||||| IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 22308 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 22365 188 : AspLeuProLeuThrValThrProTyrTyrGluIleLeuPhe >>>> Target Intr : 202 ||||||||||||:!!||||||||||||||||||||| ::! 316 bp AspLeuProLeuSerValThrProTyrTyrGluIleThrTyr-+ 22366 : GATCTACCATTATCCGTAACAccatattatgaaattacttACat................ : 22412 203 : on 1 >>>> ValLeuGlnValLeuSerLeuTyrHisValGlyIleCysTyrIleCysP : 218 !.!|||...||| |||!!.|||.!! ||||||:!!|||| ++AlaLeuSerVal---------TyrGlnValSerAlaCysTyrLeuCysP 22413 : .........agGCTTTATCTGTG---------TACCAAGTTAGCGCGTGTTACCTTTGCt : 22765 219 : heAspAsnLeuLeuCysLeuIleAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnT : 238 ||||| :::... :::::: ||||||!.!||| !||||||||||||||||||| heAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnT 22766 : ttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAAT : 22825 239 : yrArgLeuLeuTyrLeuGlyGluThrIleGluLysGlnProAsnGluTyrAlaIleLysG : 258 |||||:!! ! !!:!!..!! !! !|||! ! ! !!:! ::! !!!. yrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSer------SerGluAsnP 22826 : ACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGC------AGTGAAAATC : 22879 259 : luThrLeuProSerAsnTyrLeuLysAsnTyrHisThrValPheLysCysCysValArgG : 278 !!:! ! !..! |||! !:!!!!.! !:!!! ! !|||||| !|||:!!!:!: roSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnG 22880 : CAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAAC : 22939 279 : luHisGlnAspArgIleAsnTyrCysGlnArgLeuAsnAsnIlePheThrTyrIleValL : 298 !!||||||! ! !|||.!.!:!||| !! !|||.!..!.:!!|||||| ||||||| lnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleValL 22940 : AGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTAC : 22999 299 : euGlyHisIleValValPheSerLeuLeuLeuCysLeuValGlyPheGlnValLeuMetA : 318 |||||!!.:!!:!!:!!! !|||:!!|||:!!|||!!!:!!|||!:!|||||||||:!!! euGlyGlnValLeuMetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeuV 23000 : TCGGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGG : 23059 319 : laAsn : 319 .!!:! alSer 23060 : TGAGT : 23064 vulgar: gi|350397292|ref|XP_003484830.1| 167 319 . KQ414828.1 22307 23064 + 267 M 34 102 5 0 2 I 0 312 3 0 2 M 4 12 G 3 0 M 44 132 G 2 0 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22308 23064 267 + . gene_id 6 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22308 22409 . + . KQ414828.1 exonerate:protein2genome:local exon 22308 22409 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22410 22411 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 22410 22725 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 23064 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 23064 . + . insertions 0 ; deletions 5 KQ414828.1 exonerate:protein2genome:local similarity 22308 23064 267 + . alignment_id 6 ; Query gi|350397292|ref|XP_003484830.1| ; Align 22308 168 102 ; Align 22726 202 12 ; Align 22738 209 132 ; Align 22870 255 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 253 Query range: 324 -> 410 Target range: 23571 -> 23829 325 : ArgLeuIlePheValPheHisIleValGlySerSerSerGlnLeuLeuLeuPheThrTyr : 344 |||:!! !|||!.!! ! !:!::!! !.!!! !|||||||||! !:!!||||||||| ArgValAlaPheAlaCysPheLeuMetMetGlyMetSerGlnLeuTrpMetPheThrTyr 23572 : CGCGTTGCTTTCGCGTGCTTCTTGATGATGGGCATGAGTCAACTATGGATGTTCACGTAT : 23629 345 : SerCysAspThrLeuIleArgGluSerThrAsnIleGlyThrAlaValTyrSerGlyPro : 364 ||||||||| !:!!! !! !|||||| !||||||!.! !:!!||||||:!!|||||| SerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyPro 23630 : AGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCA : 23689 365 : TrpThrHisLeuThrMetAspLysIleGlyLysLeuLeuArgLysAspLeuThrMetIle : 384 |||! !:!!||| !!|||||||||.!!||||||||||||||||||!!:||| !|||:!! TrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysGluLeuGlnMetLeu 23690 : TGGATAAATTTACCAATGGACAAATTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTC : 23749 385 : IleLeuArgSerSerLysProCysCysLeuThrAlaSerGlyPhePheProValSerLeu : 404 |||||||||:!!!!!::!|||! !..!|||||||||!!!||||||||| !!:!!|||||| IleLeuArgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleSerLeu 23750 : ATCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTC : 23809 405 : GluThrCysThrLysVal : 410 ||||||! !||||||||| GluThrPheThrLysVal 23810 : GAAACCTTTACTAAGGTA : 23829 vulgar: gi|350397292|ref|XP_003484830.1| 324 410 . KQ414828.1 23571 23829 + 253 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 23572 23829 253 + . gene_id 7 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 23572 23829 . + . KQ414828.1 exonerate:protein2genome:local exon 23572 23829 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 23572 23829 253 + . alignment_id 7 ; Query gi|350397292|ref|XP_003484830.1| ; Align 23572 325 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 246 Query range: 328 -> 410 Target range: 38514 -> 38760 329 : ValPheHisIleValGlySerSerSerGlnLeuLeuLeuPheThrTyrSerCysAspThr : 348 :!!||| ! :!! !.!! !|||||||||! !:!!|||||||||||||||||| ! MetPheAlaThrMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCys 38515 : ATGTTCGCAACGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGC : 38572 349 : LeuIleArgGluSerThrAsnIleGlyThrAlaValTyrSerGlyProTrpThrHisLeu : 368 :!!! !! !|||||| !||||||!.! !:!!||||||:!!|||||||||! !:!!||| IleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeu 38573 : ATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTA : 38632 369 : ThrMetAspLysIleGlyLysLeuLeuArgLysAspLeuThrMetIleIleLeuArgSer : 388 !!|||||||||...|||||||||||||||||||||||| !:!!:!!|||||||||:!! ProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAla 38633 : CCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCG : 38692 389 : SerLysProCysCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrCysThr : 408 !!!::!|||! !! !|||||||||!!!||||||||| !!:!!||||||||||||! !||| ArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThr 38693 : AGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACT : 38752 409 : LysVal : 410 |||||| LysVal 38753 : AAGGTA : 38760 vulgar: gi|350397292|ref|XP_003484830.1| 328 410 . KQ414828.1 38514 38760 + 246 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38515 38760 246 + . gene_id 8 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38515 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38515 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38515 38760 246 + . alignment_id 8 ; Query gi|350397292|ref|XP_003484830.1| ; Align 38515 329 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 206 Query range: 192 -> 319 Target range: 37832 -> 38207 193 : ValThrProTyrTyrGluIleLeuPheValLeuGlnValLeuSerLeuTyrHisValGly : 212 :!!! !||| ::: ::: ::! !|||!.!||||||:!!|||!!.|||.!! MetIleProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValSer 37833 : ATGATTCCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTAGC : 37890 213 : IleCysTyrIleCysPheAspAsnLeuLeuCysLeuIleAsnLeuHisAlaAlaThrGln : 232 ||||||:!!||||||||| :::... :::::: ||||||!.!||| !||| AlaCysTyrLeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGln 37891 : GCGTGTTACCTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAG : 37950 233 : PheArgIleLeuGlnTyrArgLeuLeuTyrLeuGlyGluThrIleGluLysGlnProAsn : 252 |||||||||||||||||||||:!! ! !!:!!..!! !! !|||! ! ! !!:! PheArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSer 37951 : TTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGC : 38010 253 : GluTyrAlaIleLysGluThrLeuProSerAsnTyrLeuLysAsnTyrHisThrValPhe : 272 ::! !!!. !!:! ! !..! |||! !:!!!!.! !:!!! ! !||| ------SerGluAsnProSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPhe 38011 : ------AGTGAAAATCCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTT : 38064 273 : LysCysCysValArgGluHisGlnAspArgIleAsnTyrCysGlnArgLeuAsnAsnIle : 292 ||| !|||:!!!:!:!!||||||! ! !|||.!.!:!||| !! !|||.!..!.:!! LysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluVal 38065 : AAGAATTGCATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTA : 38124 293 : PheThrTyrIleValLeuGlyHisIleValValPheSerLeuLeuLeuCysLeuValGly : 312 |||||| |||!.!||||||!!.:!!:!!:!!||||||:!!|||:!!|||!!!|||! ! PheThrValIleAlaLeuGlyGlnValLeuMetPheSerIleLeuIleCysPheValVal 38125 : TTCACGGTAATTGCACTCGGACAAGTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTG : 38184 313 : PheGlnValLeuMetAlaAsn : 319 !:!|||!.!|||:!!!.!!:! TyrGlnAlaLeuLeuValSer 38185 : TATCAAGCACTCCTGGTGAGT : 38207 vulgar: gi|350397292|ref|XP_003484830.1| 192 319 . KQ414828.1 37832 38207 + 206 M 60 180 G 2 0 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37833 38207 206 + . gene_id 9 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37833 38207 . + . KQ414828.1 exonerate:protein2genome:local exon 37833 38207 . + . insertions 0 ; deletions 2 KQ414828.1 exonerate:protein2genome:local similarity 37833 38207 206 + . alignment_id 9 ; Query gi|350397292|ref|XP_003484830.1| ; Align 37833 193 180 ; Align 38013 255 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 167 -> 209 Target range: 27339 -> 27465 168 : IleValGluAsnIleGlyArgAsnTyrSerAspArgValLeuProPheArgMetTrpLeu : 187 |||::: |||:!!|||!:!||| ! |||||||||! !! ! !||| !||||||!!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPhe 27340 : attttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTC : 27397 188 : AspLeuProLeuThrValThrProTyrTyrGluIleLeuPheValLeuGlnValLeuSer : 207 ||||||||||||:!!||||||||||||||||||||| ::!:!!:!!||||||||| !! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 27398 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 27457 208 : LeuTyr : 209 :!!!:! IlePhe 27458 : ATTTTC : 27465 vulgar: gi|350397292|ref|XP_003484830.1| 167 209 . KQ414828.1 27339 27465 + 136 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27340 27465 136 + . gene_id 10 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27340 27465 . + . KQ414828.1 exonerate:protein2genome:local exon 27340 27465 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27340 27465 136 + . alignment_id 10 ; Query gi|350397292|ref|XP_003484830.1| ; Align 27340 168 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 167 -> 209 Target range: 37450 -> 37576 168 : IleValGluAsnIleGlyArgAsnTyrSerAspArgValLeuProPheArgMetTrpLeu : 187 ||| |||:!!|||!:!||| ! |||||||||! !! ! !!:! !||||||||| IleSerAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 37451 : atttcagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 37508 188 : AspLeuProLeuThrValThrProTyrTyrGluIleLeuPheValLeuGlnValLeuSer : 207 ||||||||||||:!!:!!|||||||||||||||||| ::!:!!:!!||||||||| !! AspLeuProLeuSerIleThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 37509 : GATCTACCATTATCCATAACAccatattatgaaattacttACATAATACAGGTATTACCA : 37568 208 : LeuTyr : 209 :!!!:! IlePhe 37569 : ATTTTC : 37576 vulgar: gi|350397292|ref|XP_003484830.1| 167 209 . KQ414828.1 37450 37576 + 133 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37451 37576 133 + . gene_id 11 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37451 37576 . + . KQ414828.1 exonerate:protein2genome:local exon 37451 37576 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37451 37576 133 + . alignment_id 11 ; Query gi|350397292|ref|XP_003484830.1| ; Align 37451 168 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 174 -> 211 Target range: 9340 -> 9451 175 : AsnTyrSerAspArgValLeuProPheArgMetTrpLeuAspLeuProLeuThrValThrPr : 195 ||| ! |||!!:|||!.!!!!! !||| !|||||||||:!!|||||||||||||||:!!|| AsnLysSerGluArgAlaPheLeuPheAspMetTrpLeuAsnLeuProLeuThrValSerPr 9341 : AACAAATCTGAAAGAGCGTTTCTGTTCGACATGTGGCTCAATTTACCTCTGACTGTTTCGCC : 9401 196 : oTyrTyrGluIleLeuPheValLeuGlnValLeuSerLeuTyrHisVal : 211 |||||||||| !:!!!!.!.!:!!||||||!!! :::::: ::: oTyrTyrGluGlyMetLeuAlaValGlnValPheProValPheThrIle 9402 : TTACTACGAAGGAATGTTGGCTGTACAGGTATTTCcagttttcacaatt : 9451 vulgar: gi|350397292|ref|XP_003484830.1| 174 211 . KQ414828.1 9340 9451 + 100 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 9341 9451 100 + . gene_id 12 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 9341 9451 . + . KQ414828.1 exonerate:protein2genome:local exon 9341 9451 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 9341 9451 100 + . alignment_id 12 ; Query gi|350397292|ref|XP_003484830.1| ; Align 9341 175 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397298|ref|XP_003484832.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 403 Query range: 3 -> 220 Target range: 3372 -> 6459 4 : CysTyrLeuHisThrGlnLeuLeuAlaValGlnGlnIleGlyAlaSerTyrIleCysProAs : 24 ||| !!!! !|||:!!!!! !:!!..! ! :!! !! !||||||:!!||| !|| CysLeuPheSerLeuGlnIlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAs 3373 : TGTCTTTTTTCGCTACAGATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGA : 3433 25 : pAsnPheLeuCysValLeuAsnLeuHisValValTyrGlnPheArgMetLeuGlnAsnThrL : 45 |||||||||||||:!!:!!|||||||||..!!.! !|||||||||!!:|||||| !!! !| pAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgL 3434 : CAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGAC : 3496 46 : euValAsnLeuTrpSerAsnIleAspGluArgThrAspIleValGlu<-><-><-><->Tyr : 61 || !|||:!!!! .!! ! !!!:...! ||| ::: !! euSerAsnValCysGlyAlaAsnGluArgSerAspLysIleSerLysLysThrProSerAsn 3497 : TGTCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAAT : 3556 62 : SerAsnGluCysTyrValMetLeuGluLysCysIleProLysHisGlnSerLeuIleGluPh : 82 |||:!!|||||||||!.!! !!!!:!!!!.||||||! !:!!||||||:!!|||||||||!: SerAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTy 3557 : TCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATA : 3619 83 : eSerAlaLysLeuAspAspIleTyrThrLeuProIleLeuSerHisMetValIlePheSerV : 103 !!!! !||||||.!.!!::!:!:! !:!! !:!:|||:!!!!.:!!:!!:!!||||||: rCysAsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerL 3620 : CTGTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTT : 3682 104 : alLeuMetTyrPheAspThrTyrGluValIleLeu >>>> Target Intron 1 >>>> : 115 !!||||||! !.!!||| !||| :!!:!::!! 457 bp euLeuMetCysLeuAspGlyTyr---LeuValMet++ 3683 : TGTTAATGTGCCTCGATGGATAT---TTGGTGATGgt......................... : 3717 116 : AlaAspValSerProGlyThrArgLeuIlePhePhePheHisMetIleGlySerPheThr : 134 ! !|||..! !! ! ! !||||||! !|||!!.||||||:!:! |||!!!.!. ! ++GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCys 3718 : agGAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGC : 4229 135 : HisIleIlePhePheThrTyrIleCysAsnGlyLeuValGluGluSerThrAsnIleSerTh : 155 !!.:!::!:.!.|||||||||! !|||:!! !!|||:!!..!|||||| !|||:!::!!!. GlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAs 4230 : CAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAA : 4292 156 : rAlaSerTyrSerGlyTrpTrpMetIleLeuProMetThrGluThrGlyArgLysIleArgL : 176 !|||! !|||..! !!! !|||!!: !||||||||| !..!:!!||||||! !:!:|||| nAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgL 4293 : TGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAA : 4355 177 : ysAspThrArgIleMetIleMetLysSerMetArgProCysTyrLeuSerAlaGlyGlyPhe : 196 ||||| !! !.!!:!:||| !:!|||! !||||||! !|||!!!||| !!|||||| ysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhe 4356 : AAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTC : 4415 197 : PheProValThrLeuGluThrSerThrAla >>>> Target Intron 2 >>>> Leu : 207 |||||||||:!!|||||||||! !|||:!! 1970 bp :!! PheProValSerLeuGluThrTyrThrSer++ ++Val 4416 : TTCCCTGTGTCACTGGAAACGTACACTTCGgt.........................agGTT : 6418 208 : IleSerSerThrMetSerTyrPheThrLeuMetArgGlu : 220 ||||||!!!.!!:!!|||||||||||||||:!:|||:!! IleSerThrAlaValSerTyrPheThrLeuLeuArgGln 6419 : ATAAGTACAGCAGTGTCGTACTTCACACTGTTAAGGCAA : 6459 vulgar: gi|350397298|ref|XP_003484832.1| 3 220 . KQ414828.1 3372 6459 + 403 M 57 171 G 0 12 M 50 150 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 3373 6459 403 + . gene_id 1 ; sequence gi|350397298|ref|XP_003484832.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 3373 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3373 3714 . + . insertions 12 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6459 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6459 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 3373 6459 403 + . alignment_id 1 ; Query gi|350397298|ref|XP_003484832.1| ; Align 3373 4 171 ; Align 3556 61 150 ; Align 3706 112 9 ; Align 4172 115 276 ; Align 6418 207 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397298|ref|XP_003484832.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 216 Query range: 114 -> 209 Target range: 12469 -> 12754 115 : AlaAspValSerProGlyThrArgLeuIlePhePhePheHisMetIleGlySerPheThr : 134 |||:!!..!|||! !!.!! !||| !||||||.!.|||! !!!: !|||:!!.!...! AlaAsnThrSerLeuAlaArgArgSerIlePheMetPheLeuIleCysGlyAlaMetVal 12470 : GCTAATACTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTT : 12527 135 : HisIleIlePhePheThrTyrIleCysAsnGlyLeuValGluGluSerThrAsnIleSer : 154 :!:.!!.!.|||||||||! !|||||| !:!!:!!|||:!!||| !||||||:!! LeuLeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAla 12528 : TTATTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCT : 12587 155 : ThrAlaSerTyrSerGlyTrpTrpMetIleLeuProMetThrGluThrGlyArgLysIle : 174 !|||:!!||||||!.! |||! ! !:!!||||||!.!:!!||||||!:!|||:!! PheAlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeu 12588 : TTTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTA : 12647 175 : ArgLysAspThrArgIleMetIleMetLysSerMetArgProCysTyrLeuSerAlaGly : 194 ||| ! ||| !! !!!::!:||| !!:!|||! ||| !|||! !|||!!!|||..! ArgHisAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsn 12648 : CGGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAAT : 12707 195 : GlyPhePheProValThrLeuGluThrSerThrAlaLeuIleSer : 209 |||||||||||||||:!!|||||||||! !|||.!!:!!! !||| GlyPhePheProValSerLeuGluThrTyrThrThrValSerSer 12708 : GGATTTTTCCCTGTGTCCTTAGAAACTTATACTACGGTGAGTTCA : 12754 vulgar: gi|350397298|ref|XP_003484832.1| 114 209 . KQ414828.1 12469 12754 + 216 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 12470 12754 216 + . gene_id 2 ; sequence gi|350397298|ref|XP_003484832.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 12470 12754 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12754 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 12470 12754 216 + . alignment_id 2 ; Query gi|350397298|ref|XP_003484832.1| ; Align 12470 115 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397298|ref|XP_003484832.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 60 -> 117 Target range: 32975 -> 33146 61 : TyrSerAsnGluCysTyrValMetLeuGluLysCysIleProLysHisGlnSerLeuIle : 80 ||||||.!.:!!||||||:!!! !!!!:!!!!.||||||! !:!!||||||:!!|||||| TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 32976 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTaatt : 33033 81 : GluPheSerAlaLysLeuAspAspIleTyrThrLeuProIleLeuSerHisMetValIle : 100 |||||| |||!!:!!::!!!:!|||:!! !:!!|||.!!!!.:!::!!!!: GluPheCysGluIleLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMet 33034 : gaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTAATG : 33093 101 : PheSerValLeuMetTyrPheAspThrTyrGluValIleLeuAlaAspVal : 117 ||||||:!!:!!!!:! !|||! ! !|||||||||:!!|||!.!..!:!! PheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeuValSerIle 33094 : TTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGGTGAGTATC : 33146 vulgar: gi|350397298|ref|XP_003484832.1| 60 117 . KQ414828.1 32975 33146 + 140 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32976 33146 140 + . gene_id 3 ; sequence gi|350397298|ref|XP_003484832.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 32976 33146 . + . KQ414828.1 exonerate:protein2genome:local exon 32976 33146 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32976 33146 140 + . alignment_id 3 ; Query gi|350397298|ref|XP_003484832.1| ; Align 32976 61 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397298|ref|XP_003484832.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 60 -> 117 Target range: 38039 -> 38210 61 : TyrSerAsnGluCysTyrValMetLeuGluLysCysIleProLysHisGlnSerLeuIle : 80 ||||||.!.:!!||||||:!!! !!!!:!!!!.||||||! !:!!||||||:!!|||||| TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 38040 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATT : 38097 81 : GluPheSerAlaLysLeuAspAspIleTyrThrLeuProIleLeuSerHisMetValIle : 100 ||||||!!!|||! !|||!!:!!::!!!:!|||:!! ! !|||.!!!!.:!::!!!!: GluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnValLeuMet 38098 : GAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCTAATG : 38157 101 : PheSerValLeuMetTyrPheAspThrTyrGluValIleLeuAlaAspVal : 117 ||||||:!!|||!!:! !|||! !..!|||:!!!.!:!!|||!.!..!:!! PheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeuValSerIle 38158 : TTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGGTGAGTATC : 38210 vulgar: gi|350397298|ref|XP_003484832.1| 60 117 . KQ414828.1 38039 38210 + 139 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38040 38210 139 + . gene_id 4 ; sequence gi|350397298|ref|XP_003484832.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38040 38210 . + . KQ414828.1 exonerate:protein2genome:local exon 38040 38210 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38040 38210 139 + . alignment_id 4 ; Query gi|350397298|ref|XP_003484832.1| ; Align 38040 61 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397298|ref|XP_003484832.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 60 -> 117 Target range: 22896 -> 23067 61 : TyrSerAsnGluCysTyrValMetLeuGluLysCysIleProLysHisGlnSerLeuIle : 80 ||||||.!.:!!||||||:!!! !!!!:!!!!.||||||! !:!!||||||:!!|||||| TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 22897 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATT : 22954 81 : GluPheSerAlaLysLeuAspAspIleTyrThrLeuProIleLeuSerHisMetValIle : 100 ||||||!!!|||! !|||!!:!!::!!!:!|||:!! !:!!|||.!!!!.:!::!!!!: GluPheCysAlaThrLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMet 22955 : GAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCTAATG : 23014 101 : PheSerValLeuMetTyrPheAspThrTyrGluValIleLeuAlaAspVal : 117 ! !|||:!!|||!!:! !||| ! !|||:!!|||:!!|||!.!..!:!! SerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeuValSerIle 23015 : TCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGGTGAGTATC : 23067 vulgar: gi|350397298|ref|XP_003484832.1| 60 117 . KQ414828.1 22896 23067 + 137 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22897 23067 137 + . gene_id 5 ; sequence gi|350397298|ref|XP_003484832.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 22897 23067 . + . KQ414828.1 exonerate:protein2genome:local exon 22897 23067 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22897 23067 137 + . alignment_id 5 ; Query gi|350397298|ref|XP_003484832.1| ; Align 22897 61 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397298|ref|XP_003484832.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 9 -> 48 Target range: 18039 -> 18156 10 : LeuLeuAlaValGlnGlnIleGlyAlaSerTyrIleCysProAspAsnPheLeuCysVal : 29 ::!|||:!!:!! ! !!.||||||!.!||||||.!!||| |||||||||||||||::! ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIle 18040 : gtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgcttcgacaattttttatgcatC : 18097 30 : LeuAsnLeuHisValValTyrGlnPheArgMetLeuGlnAsnThrLeuValAsnLeu : 48 :!!|||||||||!.!!.! !|||||||||:!:|||||| !! !:!!!.!|||:!! MetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnTyrArgMetAlaAsnMet 18098 : ATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAATACCGAATGGCGAATATG : 18156 vulgar: gi|350397298|ref|XP_003484832.1| 9 48 . KQ414828.1 18039 18156 + 117 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 18040 18156 117 + . gene_id 6 ; sequence gi|350397298|ref|XP_003484832.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 18040 18156 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18156 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 18040 18156 117 + . alignment_id 6 ; Query gi|350397298|ref|XP_003484832.1| ; Align 18040 10 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397298|ref|XP_003484832.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 7 -> 81 Target range: 32798 -> 33017 8 : ThrGlnLeuLeuAlaValGlnGlnIleGlyAlaSerTyrIleCysProAspAsnPheLeu : 27 |||||| !|||:!!||| ! |||:!!|||!.!!!!|||:!!||| ||||||...... ThrGlnAlaLeuSerValTyrGlnValGlyValCysTyrLeuCysPheAspAsnIlePhe 32799 : ACGCAGGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCTttgataacattttt : 32856 28 : CysValLeuAsnLeuHisValValTyrGlnPheArgMetLeuGlnAsnThrLeuValAsn : 47 :::::: !|||||||||!.! !|||||||||!!:|||||| !!! !:!!!.!||| PheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsn 32857 : ttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAAT : 32916 48 : LeuTrpSerAsnIleAspGluArgThrAspIleValGluTyrSerAsnGluCysTyrVal : 67 :!! |||..!:!!..!|||! !..! ! ! ! !!!: !!!!!!:! !..! ! :!! Val---SerGlyLeuSerGluIleValLysSerAsnAspAsnThrSerThrAlaGluLeu 32917 : GTG---TCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACAAGCACGGCTGAATTA : 32973 68 : MetLeuGluLysCysIleProLysHisGlnSerLeuIleGlu : 81 ! !||||||||| ! !||| !:!!!:!! !|||:!! TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGln 32974 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAA : 33017 vulgar: gi|350397298|ref|XP_003484832.1| 7 81 . KQ414828.1 32798 33017 + 108 M 41 123 G 1 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32799 33017 108 + . gene_id 7 ; sequence gi|350397298|ref|XP_003484832.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 32799 33017 . + . KQ414828.1 exonerate:protein2genome:local exon 32799 33017 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 32799 33017 108 + . alignment_id 7 ; Query gi|350397298|ref|XP_003484832.1| ; Align 32799 8 123 ; Align 32922 50 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1129 Query range: 6 -> 402 Target range: 724 -> 5253 7 : LysAspLeuSerIleIleIleThrSerPheTyrMetLysPheValGlyPheTrpLeuAlaAs : 27 !:!|||:!!:!!:!:! !:!!|||:!!||||||:!!|||.!!:!!|||||||||||||||:! ArgAspIleAlaValThrValThrAlaPheTyrLeuLysIleIleGlyPheTrpLeuAlaAs 725 : AGGGACATAGCGGTGACCGTTACGGCTTTCTACTTGAAAATTATCGGCTTCTGGTTAGCTGA : 785 28 : nAsnTyrValGluLysArgArgArgAsnValAlaLeuSerTyrThrLeuPheAlaValLeuL : 48 !!.!|||! !|||||||||||||||... ||| !!:!!:!|||:!!||| !:!!:!!! pThrTyrGluGluLysArgArgArgLysPheAlaGlnAsnPheThrIlePheMetLeuValC 786 : CACTTACGAGGAGAAacgtcgaagaaaattcgcgcAGAATTTCACGATATTTATGCTGGTGT : 848 49 : euSerLeuSerThrGluAlaArgAspLeuTyrPheSerTrpGlyAspLeuGly >>>> Ta : 66 !:!!:!! !! !|||.!!||||||:!!|||!:!!!!|||||||||!!!.!! ysAlaValValIleGluThrArgAspIleTyrTyrThrTrpGlyAspPheSer++ 849 : GCGCTGTGGTAATTGAGACGAGGGATATCTATTACACCTGGGGTGATTTCAGCgt....... : 904 67 : rget Intron 1 >>>> AspSerIleTyrValIleCysAsnValIleThrIleValLeu : 79 1408 bp ! !:!!|||:!!!!:||||||:!!:!!|||:!:! !:!! ++IleValValTyrIleMetCysAsnIleLeuThrLeuGlyIle 905 : ..................agATCGTTGTATACATAATGTGCAACATTCTAACACTGGGCATA : 2349 80 : ValValValLysIlePheIleLeuLeuIleTyrAsnGluGluLeuLeuAspIleIleAspTy : 100 !:!! !!|||||||||:!!! !:!! !!!.:!!:!!||||||::::::||| :: SerLeuPheLysIlePheLeuSerMetTrpSerLysLysLysLeuLeuGluLeuIleLysPh 2350 : AGTTTGTTCAAGATCTTTCTCTCGATGTGGAGTAAGAAAAAACttttggaattaattaaatt : 2412 101 : rAlaLysIleAsnPheTrpHisLeuAsnTyrAspSerHisGluGlnMetIleValAspAsnC : 121 :|||!:!! ||||||||||||! !:!!|||||||||!!.||||||!!:||||||:!!.!.| eAlaArgThrAsnPheTrpHisSerAspTyrAspSerGlnGluGlnIleIleValAsnGluC 2413 : cgccAGAACGAATTTCTGGCATTCGGATTATGACTCGCAGGAGCAAATTATTGTGAACGAGT : 2475 122 : ysArgArgThrCysThrIlePheValCysValPheThrPhePheAlaGlnGlyThrValIle : 141 ||!:!||||||||||||.!!.!!:!!|||||||||!.!|||||||||.!.||||||||| ! ysLysArgThrCysThrPheLeuIleCysValPheAsnPhePheAlaAsnGlyThrValSer 2476 : GTAAACGCACTTGTACATTCCTTATATGCGTGTTTAATTTCTTCGCTAATGGGACAGTGTCT : 2535 142 : GlyPheIleAlaArgProLeuLeu{I} >>>> Target Intron 2 >>>> {le}As : 151 |||!:!||| !||||||:!!:!!{ } 318 bp { !}!: GlyTyrIleIleArgProIleVal{A}++ ++{la}Se 2536 : GGATACATAATCAGGCCAATTGTA{G}gt.........................ag{CA}Ag : 2883 152 : nTyrGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpLeuProGluCysHisL : 172 : |||||||||||||||!!:|||:!!||| ! !!|||.!.|||:!! !!: ! : rIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIle---AspLeuProI 2884 : tattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATT---GACCTGCCGA : 2943 173 : euSerMetThrProTyrPheGluLeuMetPheMetLeuGln >>>> Target Intron : 186 !!!!!!!:|||||||||:::|||::::::||| :!!||| 406 bp leThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2944 : TAACCATCACACCATactatgaaatattatttacgaTACAGgt................... : 2987 187 : 3 >>>> ValValCysSerTyrHisValGlyValCysTyrHisCysPheAspAsnIleLeu : 203 :!! !! !! ! :!!||| !!:!! !!|||! !|||.!!||||||.!!||| ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheLeu 2988 : ......agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTCTG : 3442 204 : CysIleLeuAsnLeuHisAlaAlaAlaGlnPheArgIleLeuGlnHisArgLeuThrAsnMe : 224 |||!!::!!|||||||||.!!|||.!!||||||||||||||||||:!!||||||:!!|||:! CysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnVa 3443 : TGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAATGT : 3505 225 : tCysAsnThrAsnAspCysAlaGluPheTyrGluValSerGluLysSerSerTyrSerIleH : 245 !|||..!.!!|||!!: !!:::::: ... ...::: !!||| !!||| !. lCysGlyAlaAsnGluArgSerAspLysIleSer---LysLysThrProSerAsnSerAspG 3506 : GTGCGGTGCAAACGAACGTAgcgataaaatttcg---aaaaaaacaCCGTCCAATTCGGACG : 3565 246 : isArgTyrGlyLysLeuArgThrTyrIleGlnGlnHisGlnAlaLeuThrAspPheCysLys : 265 !. !!|||!.!|||!!!!:!!.!! !|||||||||||||||||||||! !!!:!:!|||!!. luCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsn 3566 : AATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAAC : 3625 266 : LysLeuGluAspValPheAsnLeuIleValLeuGlyGlnValSerLeuPheSerLeuLeuIl : 286 ||||||:!!!!:||||||..!:!!.!!||||||!.!||||||! !|||||||||||||||!! LysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeuLeuMe 3626 : AAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAAT : 3688 287 : eCysLeuAspGlyTyrLeuIleLeuMet >>>> Target Intron 4 >>>> AspAs : 297 :||||||||||||||||||:!: ||| 457 bp !!:|| tCysLeuAspGlyTyrLeuVal---Met++ ++GluAs 3689 : GTGCCTCGATGGATATTTGGTG---ATGgt.........................agGAAGA : 4175 298 : pAlaProAlaThrArgArgPheThrPheAlaPheHisIleThrGlyCysMetCysGlnLeuL : 318 |.!!||| !! !!:!|||.!!|||||| !||||||:!!|||||||||:!!|||||||||| pThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuL 4176 : TACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGT : 4238 319 : euMetPheThrTyrSerCysAspCysLeuIleArgAspSerAlaAsnValAlaAsnAlaAla : 338 |||||||||||||||||||||||||||||||||||!!:||| !||||||||||||||| ! euMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIle 4239 : TGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATA : 4298 339 : TyrLysSerLeuTrpSerArgLeuProMetAspGlnPheGlyLysIleLeuArgLysAspLe : 359 ||| ! !!!! !|||! !!.!||||||||||||::!! !|||::!!!:|||||||||||||| TyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAspLe 4299 : TACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTT : 4361 360 : uIleLeuValIleMetArgSerAlaThrProSerCysLeuThrAlaCysGlyPhePheThrV : 380 |! !!!!|||||| |||||| !..!|||!!!|||||||||||||||||||||||| !!| uThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePheProV 4362 : GACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTG : 4424 381 : alSerLeuGluThrTyrThrGly >>>> Target Intron 5 >>>> IleLeuSerS : 391 ||||||||||||||||||||..! 761 bp |||||||||! alSerLeuGluThrTyrThrSer++ ++IleLeuSerT 4425 : TGTCACTGGAAACGTACACTTCGgt.........................agATTTTAAGTA : 5218 392 : erAlaValSerTyrPheThrLeuLeuArgAsnGln : 402 !!|||!.!||||||||||||||||||||||||||| hrAlaAlaSerTyrPheThrLeuLeuArgAsnGln 5219 : CCGCAGCGTCATACTTCACACTGCTACGAAACCAA : 5253 vulgar: gi|350397203|ref|XP_003484804.1| 6 402 . KQ414828.1 724 5253 + 1129 M 59 177 5 0 2 I 0 1404 3 0 2 M 84 252 S 0 1 5 0 2 I 0 314 3 0 2 S 1 2 M 17 51 G 1 0 M 17 51 5 0 2 I 0 402 3 0 2 M 50 150 G 1 0 M 57 171 G 1 0 M 1 3 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 757 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 725 5253 1129 + . gene_id 1 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 725 901 . + . KQ414828.1 exonerate:protein2genome:local exon 725 901 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 902 903 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 902 2309 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 2308 2309 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 2310 2562 . + . KQ414828.1 exonerate:protein2genome:local exon 2310 2562 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2563 2564 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 2563 2880 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 2879 2880 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 2881 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2881 2984 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 3 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 0 ; deletions 2 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 5208 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 5207 5208 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 5209 5253 . + . KQ414828.1 exonerate:protein2genome:local exon 5209 5253 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 725 5253 1129 + . alignment_id 1 ; Query gi|350397203|ref|XP_003484804.1| ; Align 725 7 177 ; Align 2310 66 252 ; Align 2883 151 51 ; Align 2934 169 51 ; Align 3391 186 150 ; Align 3541 237 171 ; Align 3712 295 3 ; Align 4172 296 276 ; Align 5209 388 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 914 Query range: 0 -> 405 Target range: 31105 -> 34313 1 : MetSerSerArgGlnValLysAspLeuSerIleIleIleThrSerPheTyrMetLysPhe : 20 ||||||! !!:! ! !:!!|||:!!|||.!!! !:!!.!!!:!|||!:!:!! ! !! MetSerLeuLysTyrArgGlnAspValSerPheArgLeuAlaAsnPhePheLeuTyrVal 31106 : ATGAGCTTGAAATATCGTCAAGACGTTTCCTTTAGATTAGCCAACTTTTTTCTGTATGTT : 31163 21 : ValGlyPheTrpLeuAlaAsnAsnTyrValGluLysArgArgArgAsnValAlaLeuSer : 40 ||||||||||||!!!||| !||| !:!!|||:!! !! !||||||!.!|||:!! ! ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeu 31164 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCTGCGATTCTG : 31223 41 : TyrThrLeuPheAlaValLeuLeuSerLeuSerThrGluAlaArgAspLeuTyrPheSer : 60 ||||||:!! !!.!!|||!!!!!! !:!!!!! !:!! !|||! |||||||||||| TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSer 31224 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGGCTTTATTTCTCC : 31283 61 : TrpGlyAspLeuGly >>>> Target Intron 1 >>>> AspSerIleTyrValI : 71 ||||||:!!!!!! ! 670 bp ! !!!!!!:|||:!! TrpGlyAsnPheGlu++ ++ValCysMetTyrMetA 31284 : TGGGGAAACTTTGAAgt.........................agGTTTGCATGTACATGG : 31986 72 : leCysAsnValIleThrIleValLeuValValValLysIlePheIleLeuLeuIleTyrA : 91 !|||||| !|||.!!:!:||||||! !:!!:!!|||||||||:!!|||:!!:!! ! laCysAsnSerIleAlaLeuValLeuAspIleIleLysIlePheValLeuValValArgL 31987 : CATGCAACAGTATAGCCCTGGTTTTGGATATAATCAAGATTTTCGTCCTAGTCGTACGGA : 32046 92 : snGluGluLeuLeuAspIleIleAspTyrAlaLysIleAsnPheTrpHisLeuAsnTyrA : 111 !.:!!:!!!!!|||! !:!:|||!!:||| ::: ||||||:::||||||||||||| ysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPhePheHisLeuAsnTyrA 32047 : AGAAAAAGTTTCTCGGTCTGATTGAGTACATgcagaagaatttctttcatttgaaCTACG : 32106 112 : spSerHisGluGlnMetIleValAspAsnCysArgArgThrCysThrIlePheValCysV : 131 ||..! !!|||.!. |||:!!! :!!...!:!|||||||||! ! !|||||||||| spGlnAspGluAsnSerIleIleAlaHisAlaLysArgThrCysIleTyrPheValCysV 32107 : ATCAGGACGAGAATTCTATTATCGCACACGCGAAACGAACGTGCATCTACTTCGTCTGCG : 32166 132 : alPheThrPhePheAlaGlnGlyThrValIleGlyPheIleAlaArgProLeuLeu{I} : 150 |||||:!!|||! !:!!|||..!||||||.!!..!!:!||| !||||||!!!:!!{ } alPheSerPheCysSerGlnSerThrValPheSerTyrIleIleArgProPheVal{S}+ 32167 : TCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTATATAATAAGGCCATTTGTA{T}g : 32224 151 : >>>> Target Intron 2 >>>> {le}AsnTyrGlyLysAsnGluSerGluArgI : 160 170 bp { !}||| !|||||||||||||||!!:||| + ++{er}AsnLeuGlyLysAsnGluSerAspArgG 32225 : t.........................ag{ca}AATCTTGGAAAGAATGAATCTGATAGAG : 32423 161 : leLeuProPheAsnMetTrpLeuProGluCysHisLeuSerMetThrProTyrPheGluL : 180 !! ! !!:!:!!||||||||| !!: ! ||||||:!:|||||||||:::|||: luHisIleTyrAspMetTrpLeu---AspLeuProLeuSerValThrProTyrTyrGluI 32424 : AACATATATACGATATGTGGCTC---GATCTACCATTATCCGTAACAccatattatgaaa : 32480 181 : euMetPheMetLeuGln >>>> Target Intron 3 >>>> ValValCysSerTy : 190 :: ::!!!::!!||| 307 bp !.!:!!! ! !|| leThrTyrIleIleGln++ ++AlaLeuSerValTy 32481 : ttacttACATAATACAGgt.........................agGCTTTATCTGTGTA : 32817 191 : rHisValGlyValCysTyrHisCysPheAspAsnIleLeuCysIleLeuAsnLeuHisAl : 210 |!!.|||||||||||||||! !|||||||||||||||... |||::: !||||||!. rGlnValGlyValCysTyrLeuCysPheAspAsnIlePhePheIleMetCysLeuHisVa 32818 : CCAAGTTGGAGTGTGTTACCTTTGCTttgataacatttttttcattatgtgTCTACACGT : 32877 211 : aAlaAlaGlnPheArgIleLeuGlnHisArgLeuThrAsnMetCysAsnThrAsnAspCy : 230 !|||!.!||||||||||||||||||:!!|||:!!.!!|||:!!! ..! !!:!!!: lAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIl 32878 : GGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGAT : 32937 231 : sAlaGluPheTyrGlu<->ValSerGluLysSerSerTyrSerIleHisArgTyrGlyLy : 249 !.!:!! ! !!!!: ..!||| ! ..!! !|||||| ! !!||| !|| eValLysSerAsnAspAsnThrSerThrAlaGluLeuTyrSerGluLysCysTyrIleLy 32938 : AGTGAAGAGCAATGATAATACAAGCACGGCTGAATTATACTCAGAGAAATGTTACATCAA : 32997 250 : sLeuArgThrTyrIleGlnGlnHisGlnAlaLeuThrAspPheCysLysLysLeuGluAs : 269 |!!!!:!!.!! !||||||||||||||||||||| :::||||||::: ||||||!! sPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysGluIleLeuGluGl 32998 : GTTTAAGAATTGCATTCAACAACATCAGGCACTaattgaattttgtgaaatactCGAAGA : 33057 270 : pValPheAsnLeuIleValLeuGlyGlnValSerLeuPheSerLeuLeuIleCysLeuAs : 289 :||||||!..:!!|||||||||||||||||| !:!!||||||:!!:!!||||||!!!! uValPheThrValIleValLeuGlyGlnValLeuMetPheSerIleIleIleCysPheAl 33058 : GGTATTCACGGTAATCGTACTCGGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGC : 33117 290 : pGlyTyrLeuIleLeuMet >>>> Target Intron 4 >>>> AspAspAlaPro : 299 !|||||| !:!!|||:!! 406 bp !||| aGlyTyrGluValLeuLeu++ ++IleThrLeuPro 33118 : CGGGTATGAAGTACTCCTGgt.........................agATAACGTTACCA : 33553 300 : AlaThrArgArgPheThrPheAlaPheHisIleThrGlyCysMetCysGlnLeuLeuMet : 319 ! ! !||| !!.!!|||.!!! ! !:!:! ! ! !!:!! !!||||||! !||| PheGluSerArgValAlaPheThrCysPheLeuIleThrGlyValSerGlnLeuTrpMet 33554 : TTTGAATCGCGCGTTGCTTTCACGTGCTTCTTGATTACGGGCGTGAGTCAACTATGGATG : 33613 320 : PheThrTyrSerCysAspCysLeuIleArgAspSerAlaAsnValAlaAsnAlaAlaTyr : 339 |||||||||||||||:!!|||:!!! !! !!!:||| !|||:!!|||.!.:!!!.!||| PheThrTyrSerCysAsnCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyr 33614 : TTCACGTACAGTTGCAATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTAC : 33673 340 : LysSerLeuTrpSerArgLeuProMetAspGlnPheGlyLysIleLeuArgLysAspLeu : 359 .!!! !|||! !!.!||||||||||||:::|||||||||:::||||||||||||||| AlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeu 33674 : GCTGGACCATGGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAGGATTTA : 33733 360 : IleLeuValIleMetArgSerAlaThrProSerCysLeuThrAlaCysGlyPhePheThr : 379 !:!!:!!|||:!!|||:!! ! !||||||..!|||||||||||||||||||||:!! GlnValLeuIleLeuArgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSer 33734 : CAAGTGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCT : 33793 380 : ValSerLeuGluThrTyrThrGly >>>> Target Intron 5 >>>> IleLeuS : 390 :!!!!!|||||||||!:!||| ! 440 bp |||:!!| IleThrLeuGluThrPheThrLys++ ++IleMetS 33794 : ATAACTCTCGAAACCTTTACTAAGgt.........................agATCATGA : 34266 391 : erSerAlaValSerTyrPheThrLeuLeuArgAsnGlnSerAsnAsp : 405 ||!!!:!!:!!||||||||||||||||||!:!.!....:!!.!.||| erThrSerMetSerTyrPheThrLeuLeuLysGlnSerAlaGluAsp 34267 : GTACATCAATGTCGTATTTCACCCTACTAAAACAAAGTGCCGAGGAC : 34313 vulgar: gi|350397203|ref|XP_003484804.1| 0 405 . KQ414828.1 31105 34313 + 914 M 65 195 5 0 2 I 0 666 3 0 2 M 84 252 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 17 51 G 1 0 M 17 51 5 0 2 I 0 303 3 0 2 M 50 150 G 0 3 M 60 180 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31106 34313 914 + . gene_id 2 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 31106 31300 . + . KQ414828.1 exonerate:protein2genome:local exon 31106 31300 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 31301 31302 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 31301 31970 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 31969 31970 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 31971 32223 . + . KQ414828.1 exonerate:protein2genome:local exon 31971 32223 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32224 32225 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32224 32393 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 32392 32393 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 32394 32497 . + . KQ414828.1 exonerate:protein2genome:local exon 32394 32497 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 32498 32499 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32498 32804 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 32803 32804 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32805 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32805 33137 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 5 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34313 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34313 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31106 34313 914 + . alignment_id 2 ; Query gi|350397203|ref|XP_003484804.1| ; Align 31106 1 195 ; Align 31971 66 252 ; Align 32396 151 51 ; Align 32447 169 51 ; Align 32805 186 150 ; Align 32958 236 180 ; Align 33544 296 276 ; Align 34260 388 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 734 Query range: 67 -> 405 Target range: 21897 -> 24193 68 : IleTyrValIleCysAsnValIleThrIleValLeuValValValLysIlePheIleLeu : 87 !!:|||:!! !|||||| !:!!.!!:!:||||||! !:!!:!!|||||||||:!!||| MetTyrMetAlaCysAsnSerLeuAlaLeuValLeuAspIleIleLysIlePheValLeu 21898 : ATGTACATGGCATGCAACAGTTTAGCCCTGGTTTTGGATATAATCAAGATTTTCGTCCTA : 21955 88 : LeuIleTyrAsnGluGluLeuLeuAspIleIleAspTyrAlaLysIleAsnPheTrpHis : 107 |||:!! !!.:!!:!!!!!|||! !:!:|||!!:||| !:!!! |||||||||||| LeuValArgLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheTrpHis 21956 : CTCGTACGGAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTTTGGCAT : 22015 108 : LeuAsnTyrAspSerHisGluGlnMetIleValAspAsnCysArgArgThrCysThrIle : 127 ||||||||||||..! !!|||.!. |||:!!! :!!...!:!|||||||||! ! ! LeuAsnTyrAspGlnAspGluAsnSerIleIleAlaHisAlaLysArgThrCysIleTyr 22016 : TTGAACTACGACCAGGACGAGAATTCTATTATCGCACACGCGAAACGAACGTGCATCTAC : 22075 128 : PheValCysValPheThrPhePheAlaGlnGlyThrValIleGlyPheIleAlaArgPro : 147 |||||||||||||||:!!|||! !:!!|||..!||||||.!!..!!:!||| !|||||| PheValCysValPheSerPheCysSerGlnSerThrValPheSerTyrIleIleArgPro 22076 : TTCGTCTGCGTCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTATATAATAAGGCCA : 22135 148 : LeuLeu{I} >>>> Target Intron 1 >>>> {le}AsnTyrGlyLysAsnGlu : 156 !!!:!!{ } 170 bp { !}||| !|||||||||||| PheVal{S}++ ++{er}AsnLeuGlyLysAsnGlu 22136 : TTTGTA{T}gt.........................ag{ca}AATCTTGGAAAGAATGAA : 22332 157 : SerGluArgIleLeuProPheAsnMetTrpLeuProGluCysHisLeuSerMetThrPro : 176 |||!!:||| !! ! !!:!:!!||||||||| !!: ! ||||||:!:|||||| SerAspArgGluHisIleTyrAspMetTrpLeu---AspLeuProLeuSerValThrPro 22333 : TCTGATAGAGAACATATATACGATATGTGGCTC---GATCTACCATTATCCGTAACAcca : 22389 177 : TyrPheGluLeuMetPhe >>>> Target Intron 2 >>>> MetLeuGlnValV : 187 |||:::|||::: ::! 316 bp |||...||| TyrTyrGluIleThrTyr-+ ++AlaLeuSerVal- 22390 : tattatgaaattacttACat.........................agGCTTTATCTGTG- : 22738 188 : alCysSerTyrHisValGlyValCysTyrHisCysPheAspAsnIleLeuCysIleLeuA : 207 |||!!.|||.!!!.!||||||! !||||||||| |||... |||||| --------TyrGlnValSerAlaCysTyrLeuCysPheAspIleIlePhePheIleLeuC 22739 : --------TACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatttttttcattttgt : 22789 208 : snLeuHisAlaAlaAlaGlnPheArgIleLeuGlnHisArgLeuThrAsnMetCysAsnT : 227 ||||||!.!|||!.!||||||||||||||||||:!!|||:!!.!!|||:!!! ..! ysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnValSerGlyL 22790 : gtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTC : 22849 228 : hrAsnAspCysAlaGluPheTyrGlu<->ValSerGluLysSerSerTyrSerIleHisA : 246 !!:!!!: !.!:!! ! !||| !||| ! ! ..!! !|||||| ! euSerGluIleValLysSerSerGluAsnProSerThrAspGluLeuTyrSerGluLysC 22850 : TAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAATTATACTCAGAGAAAT : 22909 247 : rgTyrGlyLysLeuArgThrTyrIleGlnGlnHisGlnAlaLeuThrAspPheCysLysL : 266 !!||| !|||!!!!:!!.!! !|||||||||||||||||||||! !!!:|||||| !! ysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysAlaT 22910 : GTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAA : 22969 267 : ysLeuGluAspValPheAsnLeuIleValLeuGlyGlnValSerLeuPheSerLeuLeuI : 286 !||||||!!:||||||!..:!!|||||||||||||||||| !:!!! !|||:!!|||| hrLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMetSerSerIleLeuI 22970 : CACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCTAATGTCTAGCATATTAA : 23029 287 : leCysLeuAspGlyTyrLeuIleLeuMet >>>> Target Intron 3 >>>> As : 296 |||||!!! !||||||! !:!!|||:!! 492 bp leCysPheIleGlyTyrGlnValLeuLeu++ ++Il 23030 : TTTGCTTCATCGGGTATCAAGTACTCCTGgt.........................agAT : 23551 297 : pAspAlaProAlaThrArgArgPheThrPheAlaPheHisIleThrGlyCysMetCysGl : 316 ! ! !! ! ! !||| !!.!!||||||! ! !:!:! ! ! !!||| !!|| eLysLeuSerPheGluSerArgValAlaPheAlaCysPheLeuMetMetGlyMetSerGl 23552 : AAAGTTATCATTTGAATCGCGCGTTGCTTTCGCGTGCTTCTTGATGATGGGCATGAGTCA : 23611 317 : nLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgAspSerAlaAsnValAlaAs : 336 ||||! !||||||||||||||||||||||||:!!! !! !!!:||| !|||:!!|||.! nLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGl 23612 : ACTATGGATGTTCACGTATAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGA : 23671 337 : nAlaAlaTyrLysSerLeuTrpSerArgLeuProMetAspGlnPheGlyLysIleLeuAr : 356 .:!!!.!||| .!!! !|||! !!.!||||||||||||:!!|||||||||:!:||||| uSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuAr 23672 : ATCTGTGTACGCTGGACCATGGATAAATTTACCAATGGACAAATTTGGAAAACTGCTAAG : 23731 357 : gLysAspLeuIleLeuValIleMetArgSerAlaThrProSerCysLeuThrAlaCysGl : 376 ||||!!:||| !:!!:!!|||:!!|||:!! ! !||||||..!|||||||||||||| gLysGluLeuGlnMetLeuIleLeuArgAlaArgArgProSerAlaLeuThrAlaCysGl 23732 : AAAAGAATTGCAAATGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGG : 23791 377 : yPhePheThrValSerLeuGluThrTyrThrGly >>>> Target Intron 4 >>> : 388 |||||||:!!:!!||||||||||||!:!||| ! 313 bp yPhePheSerIleSerLeuGluThrPheThrLys++ 23792 : ATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt........................ : 23829 389 : > IleLeuSerSerAlaValSerTyrPheThrLeuLeuArgAsnGlnSerAsnAsp : 405 |||:!!|||!!!:!!:!!||||||||||||||||||!:!.!. ! !.!.||| ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnCysIleGluAsp 23830 : .agATCATGAGTACATCAATGTCGTATTTCACATTATTAAAACAATGTATCGAGGAC : 24193 vulgar: gi|350397203|ref|XP_003484804.1| 67 405 . KQ414828.1 21897 24193 + 734 M 82 246 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 17 51 G 1 0 M 14 42 5 0 2 I 0 312 3 0 2 M 4 12 G 3 0 M 46 138 G 0 3 M 60 180 5 0 2 I 0 488 3 0 2 M 92 276 5 0 2 I 0 309 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21898 24193 734 + . gene_id 3 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 21898 22144 . + . KQ414828.1 exonerate:protein2genome:local exon 21898 22144 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22145 22146 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22145 22314 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22313 22314 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 22315 22409 . + . KQ414828.1 exonerate:protein2genome:local exon 22315 22409 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 22410 22411 . + . intron_id 2 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 22410 22725 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 23058 . + . insertions 3 ; deletions 3 KQ414828.1 exonerate:protein2genome:local splice5 23059 23060 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23059 23550 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 23549 23550 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 23551 23826 . + . KQ414828.1 exonerate:protein2genome:local exon 23551 23826 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23827 23828 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23827 24139 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 24138 24139 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 24140 24193 . + . KQ414828.1 exonerate:protein2genome:local exon 24140 24193 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21898 24193 734 + . alignment_id 3 ; Query gi|350397203|ref|XP_003484804.1| ; Align 21898 68 246 ; Align 22317 151 51 ; Align 22368 169 42 ; Align 22726 183 12 ; Align 22738 190 138 ; Align 22879 236 180 ; Align 23551 296 276 ; Align 24140 388 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 507 Query range: 0 -> 229 Target range: 15100 -> 18171 1 : MetSerSerArgGlnValLysAspLeuSerIleIleIleThrSerPheTyrMetLysPhe : 20 ||||||||| ! ..! ! |||:!!||||||! !:!:|||||| !!!:!||||||.!! MetSerSerPheThrThrAspAspIleSerIleSerLeuThrSerValPheMetLysIle 15101 : ATGAGTAGTTTCACCACCGATGACATATCAATCAGCCTGACGTCCGTTTTCATGAAGATC : 15158 21 : ValGlyPheTrpLeuAlaAsnAsnTyrValGluLysArgArgArgAsnValAlaLeuSer : 40 ||||||.!.|||:!!|||:::||| ! !!|||:!!||| !||||||:!!.!!|||!!! ValGlyLeuTrpMetAlaSerAsnArgPheGluGlnArgValArgAsnIleThrLeuCys 15159 : GTTGGACTGTGGATGGCGTCGAACCGTTTCGAGCAACGAGTACGAAATATCACGCTGTGT : 15218 41 : TyrThrLeuPheAlaValLeuLeuSerLeuSerThrGluAlaArgAspLeuTyrPheSer : 60 |||||||||.!!|||:!!|||!!!:!!|||!!!! !:!! !! !|||||||||!:!||| TyrThrLeuIleAlaIleLeuPheAlaLeuTrpIleGlnMetThrAspLeuTyrTyrSer 15219 : TACACGCTGATCGCGATTCTCTTCGCCCTGTGGATACAAATGACGGATTTGTATTACTCG : 15278 61 : TrpGlyAspLeuGly >>>> Target Intron 1 >>>> AspSerIleTyrValI : 71 |||||||||!!!||| 891 bp ! !!!!:!!|||..! TrpGlyAspPheGly++ ++AlaCysLeuTyrThrA 15279 : TGGGGAGATTTTGGTgt.........................agGCCTGTTTATATACTG : 16202 72 : leCysAsnValIleThrIleValLeuValValValLysIlePheIleLeuLeuIleTyrA : 91 !||||||:!!:!!:!!:!!..!:!! ! !!:!!||||||.!!:!!|||||| !:::. laCysAsnIleLeuSerLeuThrIleProPheLeuLysIleLeuValLeuLeuAlaHisL 16203 : CATGCAACATTTTATCGTTAACAATACCGTTTCTCAAGATACTCGTCTTGCTTGCAcaca : 16262 92 : snGluGluLeuLeuAspIleIleAspTyrAlaLysIleAsnPheTrpHisLeuAsnTyrA : 111 .....:::...... :::||| :!! !:!! !.!.|||! !||| !:!!|||| ysAsnAspPhePheHisLeuIleLeuHisLeuGlnArgGluPheLeuHisAlaAspTyrA 16263 : aaaatgatttttttcatttgattcTGCACCTACAACGAGAATTCTTGCATGCAGATTACG : 16322 112 : spSerHisGluGlnMetIleValAspAsnCysArgArgThrCysThrIlePheValCysV : 131 ||..!:!!|||:!!! !|||:!! !..!|||!:!||| !||||||.!!||||||||| spAspTyrGluLysLysIleLeuLeuGlyCysGlnArgGlnCysThrPhePheValCysP 16323 : ACGACTACGAGAAAAAGATTTTGCTCGGTTGCCAACGTCAATGTACCTTCTTCGTTTGTT : 16382 132 : alPheThrPhePheAlaGlnGlyThrValIleGlyPheIleAlaArgProLeuLeuIleA : 151 !!||||||.!!|||.!!:!!||||||||||||..!!:!|||!.!!.!||||||:!! !! hePheThrLeuPheThrLysGlyThrValIleSerTyrIleValAsnProLeuIleGlyL 16383 : TCTTCACACTTTTCACTAAAGGAACTGTTATCTCGTACATCGTTAATCCGCTTATTGGTA : 16442 152 : snTyrGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpLeu >>>> Tar : 168 !.! ! ! ::: !!:! ! !! !||| !.!. !.!.|||:!! ysSerIleAspSerLeuAsnThrSerSerLeuIleLeuCysPheTrpIle+- 16443 : AGTCGATTGATTCGTTGAATACATCGAGCTTGATCCTATGCTTCTGGATTga........ : 16495 169 : get Intron 2 >>>> ProGluCysHisLeuSerMetThrProTyrPheGluLeuMe : 181 1383 bp !.!.! ! ||||||||||||||||||!:!|||::: -+ValAsnLeuProLeuSerMetThrProTyrTyrGluIleTh 16496 : .................ggGTCAACTTGCCATTATCAATGACGCCATATTACgaaataac : 17915 182 : tPheMetLeuGln >>>> Target Intron 3 >>>> ValValCysSerTyrHis : 191 ||| |||||| 110 bp |||:!!! ! !|||||| rPheSerLeuGln++ ++ValLeuSerLeuTyrHis 17916 : tttttcattaCAGgt.........................aggtTCTGTCTCTGTACCAT : 18055 192 : ValGlyValCysTyrHisCysPheAspAsnIleLeuCysIleLeuAsnLeuHisAlaAla : 211 :!!|||||| !!||| !||||||||||||...|||||||||:!!||||||||||||||| IleGlyValSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisAlaAla 18056 : ATTGGCGTGAGTTATTTCTgcttcgacaattttttatgcatCATGAACTTGCACGCGGCT : 18115 212 : AlaGlnPheArgIleLeuGlnHisArgLeuThrAsnMetCysAsnThrAsnAsp : 229 .!!|||||||||:!!||||||:!!|||:!!.!!|||||| !:!! !!!.||| ThrGlnPheArgValLeuGlnTyrArgMetAlaAsnMetThrAspLeuLysAsp 18116 : ACTCAGTTTCGAGTATTGCAATACCGAATGGCGAATATGACCGATTTAAAGGac : 18171 vulgar: gi|350397203|ref|XP_003484804.1| 0 229 . KQ414828.1 15100 18171 + 507 M 65 195 5 0 2 I 0 887 3 0 2 M 102 306 5 0 2 I 0 1379 3 0 2 M 18 54 5 0 2 I 0 106 3 0 2 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15101 18171 507 + . gene_id 4 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 15101 15295 . + . KQ414828.1 exonerate:protein2genome:local exon 15101 15295 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 15296 15297 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 15296 16186 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 16185 16186 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 16187 16492 . + . KQ414828.1 exonerate:protein2genome:local exon 16187 16492 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 16493 16494 . + . intron_id 2 ; splice_site "GA" KQ414828.1 exonerate:protein2genome:local intron 16493 17875 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 17874 17875 . + . intron_id 1 ; splice_site "GG" KQ414828.1 exonerate:protein2genome:local cds 17876 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17876 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 2 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18171 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18171 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15101 18171 507 + . alignment_id 4 ; Query gi|350397203|ref|XP_003484804.1| ; Align 15101 1 195 ; Align 16187 66 306 ; Align 17876 168 54 ; Align 18040 186 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 504 Query range: 237 -> 405 Target range: 18207 -> 19909 238 : GluLysSerSerTyrSerIleHisArgTyrGlyLysLeuArgThrTyrIleGlnGlnHis : 257 .....!:!!!!!!:!:!!! !.!. !!|||..! |||!:! !||||||::!|||||| SerSerAlaCysPheAlaThrGluCysTyrAsnValLeuLysAspTyrIleArgGlnHis 18208 : AGTTCGGCGTGCTTTGCAACAGAATGTTACAACGTTCTCAAAGATTATATCAGACAGCAT : 18265 258 : GlnAlaLeuThrAspPheCysLysLysLeuGluAspValPheAsnLeuIleValLeuGly : 277 ||| !|||! !! !!:!|||!!.||||||||| ! |||||||||:!!|||||||||||| GlnAsnLeuIleAlaTyrCysAsnLysLeuGluLysValPheAsnIleIleValLeuGly 18266 : CAGAACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGTTCAATATCATTGTTCTGGGG : 18325 278 : GlnValSerLeuPheSerLeuLeuIleCysLeuAspGlyTyrLeuIleLeuMet >>>> : 296 |||:!!! !:!!||||||:!!||||||||||||||||||!:!! !||||||||| GlnLeuLeuMetPheSerMetLeuIleCysLeuAspGlyPheGlnIleLeuMet++ 18326 : CAATTGTTAATGTTCAGCATGTTGATCTGTCTCGATGGATTTCAGATACTTATGgt.... : 18384 297 : Target Intron 1 >>>> AspAspAlaProAlaThrArgArgPheThrPheAlaP : 308 975 bp ! :!!.!!|||.!!! !! !|||.!.! !||| !| ++AlaAsnThrProThrArgThrArgLeuIlePheIleP 18385 : .....................agGCAAATACACCTACCAGAACCCGACTGATTTTCATCT : 19393 309 : heHisIleThrGlyCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuI : 328 |||||||| !!.!||||||||||||||||||||||||||||||||||||||||||:!!| heHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleI 19394 : TTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGCTGCGACTGCATCA : 19453 329 : leArgAspSerAlaAsnValAlaAsnAlaAlaTyrLysSerLeuTrpSerArgLeuProM : 348 |||||!!:|||.!!!:!..!|||.!.|||!.!|||!...!!! !|||!!!! !||||||| leArgGluSerThrSerThrAlaGluAlaValTyrSerGlyProTrpThrLeuLeuProM 19454 : TAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGACACTTTTACCAA : 19513 349 : etAspGlnPheGlyLysIleLeuArgLysAspLeuIleLeuValIleMetArgSerAlaT : 368 ||..! ! !||||||!!::!!||||||||||||!!:||||||||||||||||||::!. etSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuValIleMetArgSerSerV 19514 : TGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCATGAGATCGAGCG : 19573 369 : hrProSerCysLeuThrAlaCysGlyPhePheThrValSerLeuGluThrTyrThrGly : 388 .!|||!!!|||||||||||| ! |||||||||..!|||||||||||||||||||||||| alProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGluThrTyrThrGly+ 19574 : TACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAACGTACACAGGGg : 19633 389 : >>>> Target Intron 2 >>>> IleLeuSerSerAlaValSerTyrPheThrLe : 398 223 bp :!!||||||!!!|||!.!|||||||||||||| + ++ValLeuSerThrAlaAlaSerTyrPheThrLe 19634 : t.........................agGTTTTAAGCACCGCAGCCTCATACTTTACGTT : 19886 399 : uLeuArgAsnGlnSerAsnAsp : 405 ||||!:!.!.::!|||.!.:!! uLeuLysGlnArgSerGluAsn 19887 : GCTGAAGCAAAGATCAGAGAAT : 19909 vulgar: gi|350397203|ref|XP_003484804.1| 237 405 . KQ414828.1 18207 19909 + 504 M 58 174 5 0 2 I 0 971 3 0 2 M 92 276 5 0 2 I 0 219 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 18208 19909 504 + . gene_id 5 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 18208 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18208 18381 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19909 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19909 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 18208 19909 504 + . alignment_id 5 ; Query gi|350397203|ref|XP_003484804.1| ; Align 18208 238 174 ; Align 19357 296 276 ; Align 19856 388 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 464 Query range: 189 -> 405 Target range: 10843 -> 13158 190 : TyrHisValGlyValCysTyrHisCysPheAspAsnIleLeuCysIleLeuAsnLeuHis : 209 ||| !..!|||:!!|||||| !|||||||||||||||!!!||||||:!!!:!:!!||| TyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerValHis 10844 : TATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTGCAT : 10901 210 : AlaAlaAlaGlnPheArgIleLeuGlnHisArgLeuThrAsnMetCysAsnThrAsn<-> : 229 !::!!.!||||||||||||||||||:!!|||||||||!!.:!!! !:!!..!.!. LeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGlnTyr 10902 : TTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAATAT : 10961 230 : AspCysAlaGluPheTyrGluValSerGluLysSerSerTyrSerIleHisArgTyrGly : 248 .!. :::||| |||! ! !..!..!! !!!! !... !|||! ! GlnIleSerGluLysAsnMetGluSerValLeuGluAspCysThrArgArgSerTyrGlu 10962 : CAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGTAGATCTTACGAG : 11021 249 : LysLeuArgThrTyrIleGlnGlnHisGlnAlaLeuThrAspPheCysLysLysLeuGlu : 268 |||!!!!:!!:!|||:!!!:!|||||||||.!!|||! !|||!:!! !:!!||||||||| LysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLysLeuGlu 11022 : AAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAGCTTGAA : 11081 269 : AspValPheAsnLeuIleValLeuGlyGlnValSerLeuPheSerLeuLeuIleCysLeu : 288 !!|||!:!!.. !|||:!!||||||||||||! !|||||||||:!!|||||||||||| HisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIleCysLeu 11082 : CACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATTTGCCTC : 11141 289 : AspGlyTyr<->LeuIleLeuMetAspAspAlaProAlaThr{A} >>>> Target I : 302 !|||||| :!!:!!|||:!:..! !:!!! ! !! !!{|} 1302 PheGlyTyrGlnIleLeuLeuValSerIleSerLeuProPro{A}-+ 11142 : TTTGGTTATCAGATATTATTGGTTAGTATTTCACTTCCTCCA{A}ct............. : 11189 303 : ntron 1 >>>> {rg}ArgPheThrPheAlaPheHisIleThrGlyCysMetCysGln : 316 bp {||}||| !! !||| !|||! !||| !|||..!||| ! ! +-{rg}ArgSerIlePheMetPheLeuIleCysGlyAlaMetValLeu 11190 : ............aa{GG}CGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTTTTA : 12530 317 : LeuLeuMetPheThrTyrSerCysAspCysLeuIleArgAspSerAlaAsnValAlaAsn : 336 |||!!!||||||||||||||||||:!! :!!|||..!.!.|||! !|||:!!||| ! LeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAlaPhe 12531 : TTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCTTTT : 12590 337 : AlaAlaTyrLysSerLeuTrpSerArgLeuProMetAspGlnPheGlyLysIleLeuArg : 356 |||||||||..!:!!||||||!!! !!:!!||||||:!!:!! !||||||! |||||| AlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeuArg 12591 : GCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTACGG : 12650 357 : LysAspLeuIleLeuValIleMetArgSerAlaThrProSerCysLeuThrAlaCysGly : 376 ! |||||||||:!!|||||| !|||||| ! ! !!!!|||||||||||| !||| HisAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsnGly 12651 : CATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATGGA : 12710 377 : PhePheThrValSerLeuGluThrTyrThr--{G} >>>> Target Intron 2 >> : 387 |||||| !!|||||||||||||||||||||##{!} 357 bp PhePheProValSerLeuGluThrTyrThr##{G}++ 12711 : TTTTTCCCTGTGTCCTTAGAAACTTATACTAC{G}gt....................... : 12748 388 : >> {ly}IleLeuSerSerAlaValSerTyrPheThrLeuLeuArgAsnGlnSerAsnA : 405 { !}|||||||||!!!|||!.!||||||||||||||||||||||||.!. !.!.| +-{lu}IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnValGluA 12749 : ..ac{ag}attttgAGTACCGCGGCGTCGTACTTCACATTATTGAGAAATAACGTAGAAG : 13156 406 : sp : 405 || sp 13157 : AT : 13158 vulgar: gi|350397203|ref|XP_003484804.1| 189 405 . KQ414828.1 10843 13158 + 464 M 39 117 G 0 3 M 63 189 G 0 3 M 10 30 S 0 1 5 0 2 I 0 1298 3 0 2 S 1 2 M 84 252 F 0 2 S 0 1 5 0 2 I 0 353 3 0 2 S 1 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10844 13158 464 + . gene_id 6 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 10844 11186 . + . KQ414828.1 exonerate:protein2genome:local exon 10844 11186 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 11187 11188 . + . intron_id 1 ; splice_site "CT" KQ414828.1 exonerate:protein2genome:local intron 11187 12488 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12487 12488 . + . intron_id 0 ; splice_site "AA" KQ414828.1 exonerate:protein2genome:local cds 12489 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12489 12745 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13102 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13101 13102 . + . intron_id 1 ; splice_site "ac" KQ414828.1 exonerate:protein2genome:local cds 13103 13158 . + . KQ414828.1 exonerate:protein2genome:local exon 13103 13158 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10844 13158 464 + . alignment_id 6 ; Query gi|350397203|ref|XP_003484804.1| ; Align 10844 190 117 ; Align 10964 229 189 ; Align 11156 292 30 ; Align 12491 303 252 ; Align 13105 388 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 395 Query range: 0 -> 187 Target range: 26060 -> 27456 1 : MetSerSerArgGlnValLysAspLeuSerIleIleIleThrSerPheTyrMetLysPhe : 20 ||||||! !!:! ! !:!!|||:!!|||:!!! !:!!.!!!:!|||!:!:!! ! !! MetSerLeuLysTyrArgGlnAspValSerValArgLeuAlaAsnPhePheLeuTyrVal 26061 : ATGAGCTTGAAATATCGTCAAGACGTTTCCGTTAGATTAGCCAACTTTTTTCTGTATGTC : 26118 21 : ValGlyPheTrpLeuAlaAsnAsnTyrValGluLysArgArgArgAsnValAlaLeuSer : 40 ||||||||||||!!!||| !||| !:!!|||:!! !! !||||||!.!|||:!! ! ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeu 26119 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCGGCGATTCTG : 26178 41 : TyrThrLeuPheAlaValLeuLeuSerLeuSerThrGluAlaArgAspLeuTyrPheSer : 60 ||||||:!! !!.!!|||!!!!!! !:!!!!! !:!! ! !!! |||||||||:!! TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuGlyGlyLeuTyrPheAla 26179 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGGGAGGGCTTTATTTCGCC : 26238 61 : TrpGlyAspLeuGly >>>> Target Intron 1 >>>> AspSerIleTyrValI : 71 ||||||:!!!!!! ! 669 bp ! !!!!!!:|||:!! TrpGlyAsnPheGlu++ ++ValCysMetTyrMetA 26239 : TGGGGAAACTTTGAAgt.........................agGTTTGCATGTACATGG : 26940 72 : leCysAsnValIleThrIleValLeuValValValLysIlePheIleLeuLeuIleTyrA : 91 ! !!|||! !:!!.!!!!:||||||! !:!!:!!|||||||||! !|||:!!:!!:!!! laGlyAsnGlyLeuAlaMetValLeuAspIleIleLysIlePheThrLeuValValHisL 26941 : CTGGCAACGGTTTAGCCATGGTTTTGGATATAATCAAGATTTTCACCCTAGTCGTACACA : 27000 92 : snGluGluLeuLeuAspIleIleAspTyrAlaLysIleAsnPheTrpHisLeuAsnTyrA : 111 !.:!!:!!!!!|||! !:!:|||!!:||| !:!!! |||||||||||||||||||||| ysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheTrpHisLeuAsnTyrA 27001 : AGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTTTGGCATTTGAACTACG : 27060 112 : spSerHisGluGlnMetIleValAspAsnCysArgArgThrCysThrIlePheValCysV : 131 ||..!:!!|||.!. :!!:!!! .!....!:!|||! !|||! ! !|||||||||| spGlnTyrGluAsnSerValLeuAlaGlnAlaLysArgMetCysIleTyrPheValCysV 27061 : ATCAGTACGAGAATTCTGTTTTGGCACAGGCGAAACGAATGTGCATTTACTTCGTGTGcg : 27120 132 : alPheThrPhePheAlaGlnGlyThrValIleGlyPheIleAlaArgProLeuLeu{I} : 150 ||...:::||||||:::|||...:!!|||:!!..!!:!||| !|||||||||:!!{ } alLeuSerPhePheSerGlnSerSerValLeuSerTyrIleIleArgProLeuVal{S}+ 27121 : ttttgtcatttttttctcaatctTCAGTTCTTTCCTATATCATAAGGCCACTTGTA{T}g : 27178 151 : >>>> Target Intron 2 >>>> {le}AsnTyrGlyLysAsnGluSerGluArgI : 160 169 bp { !}||| !|||||||||||||||!!:||| + ++{er}AsnLeuGlyLysAsnGluSerAspArgG 27179 : t.........................ag{ca}AATCTTGGAAAGAATGAATCGGATAGAG : 27376 161 : leLeuProPheAsnMetTrpLeuProGluCysHisLeuSerMetThrProTyrPheGluL : 180 !! ! !|||:!!||||||!!! !!: ! ||||||:!:|||||||||:::|||: luHisIlePheAspMetTrpPhe---AspLeuProLeuSerValThrProTyrTyrGluI 27377 : AACATATATTCGATATGTGGTTC---GATCTACCATTATCCGTAACAccatattatgaaa : 27433 181 : euMetPheMetLeuGlnValVal : 187 :: ::!!!::!!||||||:!! leThrTyrIleIleGlnValLeu 27434 : ttacttACATAATACAGGTATTA : 27456 vulgar: gi|350397203|ref|XP_003484804.1| 0 187 . KQ414828.1 26060 27456 + 395 M 65 195 5 0 2 I 0 665 3 0 2 M 84 252 S 0 1 5 0 2 I 0 165 3 0 2 S 1 2 M 17 51 G 1 0 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26061 27456 395 + . gene_id 7 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 26061 26255 . + . KQ414828.1 exonerate:protein2genome:local exon 26061 26255 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 26256 26257 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 26256 26924 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 26923 26924 . + . intron_id 0 ; splice_site "aG" KQ414828.1 exonerate:protein2genome:local cds 26925 27177 . + . KQ414828.1 exonerate:protein2genome:local exon 26925 27177 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 27178 27179 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 27178 27346 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 27345 27346 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 27347 27456 . + . KQ414828.1 exonerate:protein2genome:local exon 27347 27456 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 26061 27456 395 + . alignment_id 7 ; Query gi|350397203|ref|XP_003484804.1| ; Align 26061 1 195 ; Align 26925 66 252 ; Align 27349 151 51 ; Align 27400 169 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 325 Query range: 0 -> 149 Target range: 36171 -> 37287 1 : MetSerSerArgGlnValLysAspLeuSerIleIleIleThrSerPheTyrMetLysPhe : 20 ||||||! !!:! ! !:!!|||:!!||||||! !:!!.!!!:!|||!:!:!! ! !! MetSerLeuLysTyrArgGlnAspValSerIleLysLeuAlaAsnPhePheLeuTyrVal 36172 : ATGAGCTTGAAATATCGTCAAGACGTTTCCATTAAATTAGCCAACTTTTTTCTGTATGTC : 36229 21 : ValGlyPheTrpLeuAlaAsnAsnTyrValGluLysArgArgArgAsnValAlaLeuSer : 40 ||||||||||||!!!||| !||| !:!!|||:!! !! !||||||!.!|||:!! ! ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeu 36230 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCGGCGATTCTG : 36289 41 : TyrThrLeuPheAlaValLeuLeuSerLeuSerThrGluAlaArgAspLeuTyrPheSer : 60 ||||||:!! !!.!!|||!!!!!! !:!!!!! !:!! !|||! ||||||!:!:!! TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrTyrAla 36290 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGGCTTTATTACGCC : 36349 61 : TrpGlyAspLeuGly >>>> Target Intron 1 >>>> AspSerIleTyrValI : 71 ||||||:!!|||! ! 669 bp ! !!!!!!:|||:!! TrpGlyAsnLeuGlu++ ++ValCysMetTyrMetA 36350 : TGGGGAAACCTTGAAgt.........................agGTTTGCATGTACATGG : 37051 72 : leCysAsnValIleThrIleValLeuValValValLysIlePheIleLeuLeuIleTyrA : 91 ! !!|||! !:!!.!!!!:||||||! !:!!:!!||||||||| !|||:!!:!!:!!! laGlyAsnGlyLeuAlaMetValLeuAspIleIleLysIlePheSerLeuValValHisL 37052 : CAGGCAACGGTTTAGCCATGGTTTTGGATATAATCAAGATTTTCTCCCTAGTCGTACACA : 37111 92 : snGluGluLeuLeuAspIleIleAspTyrAlaLysIleAsnPheTrpHisLeuAsnTyrA : 111 !.:!!:!!!!!|||! !:!:|||!!:||| !:!!! ||||||! !||||||||||||| ysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheLeuHisLeuAsnTyrA 37112 : AGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTCTTGCATTTGAACTACG : 37171 112 : spSerHisGluGlnMetIleValAspAsnCysArgArgThrCysThrIlePheValCysV : 131 ||..!:!!|||.!. :!!:!!! .!....!:!|||! !|||! ! !|||||||||| spGlnTyrGluAsnSerValIleAlaGlnAlaLysArgMetCysIleTyrPheValCysV 37172 : ATCAGTACGAGAATTCTGTTATCGCACAGGCGAAACGAATGTGCATTTACTTCGTGTGcg : 37231 132 : alPheThrPhePheAlaGlnGlyThrValIleGlyPheIleAlaArgProLeuLeu : 149 ||...:::||||||:::|||...:!!|||:!!..!!:!|||!.!|||||||||:!! alLeuSerPhePheSerGlnSerSerValLeuSerTyrIleValArgProLeuVal 37232 : ttttgtcatttttttctcaatctTCAGTTCTTTCCTATATAGTAAGGCCACTTGTA : 37287 vulgar: gi|350397203|ref|XP_003484804.1| 0 149 . KQ414828.1 36171 37287 + 325 M 65 195 5 0 2 I 0 665 3 0 2 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 36172 37287 325 + . gene_id 8 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 36172 36366 . + . KQ414828.1 exonerate:protein2genome:local exon 36172 36366 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 36367 36368 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 36367 37035 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37034 37035 . + . intron_id 0 ; splice_site "aG" KQ414828.1 exonerate:protein2genome:local cds 37036 37287 . + . KQ414828.1 exonerate:protein2genome:local exon 37036 37287 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 36172 37287 325 + . alignment_id 8 ; Query gi|350397203|ref|XP_003484804.1| ; Align 36172 1 195 ; Align 37036 66 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 245 Query range: 313 -> 388 Target range: 28559 -> 28784 314 : MetCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgAspSerAlaAsn : 333 :!! !!||||||! !||||||||||||||||||||||||:!!! !! !!!:||| !||| ValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsn 28560 : GTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAAC : 28617 334 : ValAlaAsnAlaAlaTyrLysSerLeuTrpSerArgLeuProMetAspGlnPheGlyLys : 353 :!!|||.!.:!!!.!||| .!!! !|||! !!.!||||||||||||:::||||||||| IleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLys 28618 : ATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaa : 28677 354 : IleLeuArgLysAspLeuIleLeuValIleMetArgSerAlaThrProSerCysLeuThr : 373 :::||||||||||||||| !:!!:!!|||:!!|||:!! ! !||||||! !|||||| LeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThr 28678 : ctgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACT : 28737 374 : AlaCysGlyPhePheThrValSerLeuGluThrTyrThrGlyIle : 388 |||||||||||||||:!!:!!||||||||||||!:!||| !:!! AlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 28738 : GCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 28784 vulgar: gi|350397203|ref|XP_003484804.1| 313 388 . KQ414828.1 28559 28784 + 245 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28560 28784 245 + . gene_id 9 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28560 28784 . + . KQ414828.1 exonerate:protein2genome:local exon 28560 28784 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28560 28784 245 + . alignment_id 9 ; Query gi|350397203|ref|XP_003484804.1| ; Align 28560 314 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 245 Query range: 313 -> 388 Target range: 38535 -> 38760 314 : MetCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgAspSerAlaAsn : 333 :!! !!||||||! !||||||||||||||||||||||||:!!! !! !!!:||| !||| ValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsn 38536 : GTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAAC : 38593 334 : ValAlaAsnAlaAlaTyrLysSerLeuTrpSerArgLeuProMetAspGlnPheGlyLys : 353 :!!|||.!.:!!!.!||| .!!! !|||! !!.!||||||||||||:::||||||||| IleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLys 38594 : ATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaa : 38653 354 : IleLeuArgLysAspLeuIleLeuValIleMetArgSerAlaThrProSerCysLeuThr : 373 :::||||||||||||||| !:!!:!!|||:!!|||:!! ! !||||||! !|||||| LeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThr 38654 : ctgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACT : 38713 374 : AlaCysGlyPhePheThrValSerLeuGluThrTyrThrGlyIle : 388 |||||||||||||||:!!:!!||||||||||||!:!||| !:!! AlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 38714 : GCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 38760 vulgar: gi|350397203|ref|XP_003484804.1| 313 388 . KQ414828.1 38535 38760 + 245 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38536 38760 245 + . gene_id 10 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38536 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38536 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38536 38760 245 + . alignment_id 10 ; Query gi|350397203|ref|XP_003484804.1| ; Align 38536 314 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 243 Query range: 150 -> 295 Target range: 37459 -> 38201 151 : AsnTyrGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpLeuProGluCys : 170 ||| !|||||||||||||||!!:||| !! ! !!:!:!!||||||||| !!: AsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu---AspLeu 37460 : AATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC---GATCTA : 37514 171 : HisLeuSerMetThrPro{T} >>>> Target Intron 1 >>>> {yr}PheGlu : 179 ! ||||||!!:||||||{!} 307 bp { !} ::: ProLeuSerIleThrPro{C}-+ ++{ys}AsnLys 37515 : CCATTATCCATAACAcca{t}at.........................ag{gt}aataaa : 37848 180 : LeuMetPheMetLeuGlnValValCysSerTyrHisValGlyValCysTyrHisCysPhe : 199 ::: ::: !|||!.!:!!! ! !|||!!.|||.!!!.!||||||! !|||||| AsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPhe 37849 : aacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCttt : 37908 200 : AspAsnIleLeuCysIleLeuAsnLeuHisAlaAlaAlaGlnPheArgIleLeuGlnHis : 219 ||| |||... |||||| ||||||!.!|||!.!||||||||||||||||||:!! AspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyr 37909 : gatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATAC : 37968 220 : ArgLeuThrAsnMetCysAsnThrAsnAspCysAlaGluPheTyrGlu<->ValSerGlu : 238 |||:!!.!!|||:!!! ..! !!:!!!: !.!:!! ! !||| !||| ! ArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSerThr 37969 : AGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACA : 38028 239 : LysSerSerTyrSerIleHisArgTyrGlyLysLeuArgThrTyrIleGlnGlnHisGln : 258 ! ..!! !|||||| ! !!||| !|||!!!!:!!.!! !||||||||||||||| AspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGln 38029 : GATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAG : 38088 259 : AlaLeuThrAspPheCysLysLysLeuGluAspValPheAsnLeuIleValLeuGlyGln : 278 ||||||! !!!:|||||| !! !||||||!!:||||||!..:!!|||!.!||||||||| AlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGln 38089 : GCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAA : 38148 279 : ValSerLeuPheSerLeuLeuIleCysLeuAspGlyTyrLeuIleLeuMet : 295 ||| !:!!||||||:!!|||||||||!!!! !! !|||! ! !|||:!! ValLeuMetPheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeu 38149 : GTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTG : 38201 vulgar: gi|350397203|ref|XP_003484804.1| 150 295 . KQ414828.1 37459 38201 + 243 M 17 51 G 1 0 M 8 24 S 0 1 5 0 2 I 0 303 3 0 2 S 1 2 M 58 174 G 0 3 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37460 38201 243 + . gene_id 11 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37460 37535 . + . KQ414828.1 exonerate:protein2genome:local exon 37460 37535 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 37536 37537 . + . intron_id 1 ; splice_site "at" KQ414828.1 exonerate:protein2genome:local intron 37536 37842 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37841 37842 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37843 38201 . + . KQ414828.1 exonerate:protein2genome:local exon 37843 38201 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37460 38201 243 + . alignment_id 11 ; Query gi|350397203|ref|XP_003484804.1| ; Align 37460 151 51 ; Align 37511 169 24 ; Align 37845 178 174 ; Align 38022 236 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 0 -> 63 Target range: 21030 -> 21219 1 : MetSerSerArgGlnValLysAspLeuSerIleIleIleThrSerPheTyrMetLysPhe : 20 ||||||! !!:! ! !:!!|||:!!|||:!!! !:!!.!!!:!||||||:!! ! !! MetSerLeuLysTyrArgGlnAspValSerValArgLeuAlaAsnPheTyrLeuTyrVal 21031 : ATGAGCTTGAAATATCGCCAAGACGTTTCCGTTAGATTAGCCAATTTTTATCTGTATGTC : 21088 21 : ValGlyPheTrpLeuAlaAsnAsnTyrValGluLysArgArgArgAsnValAlaLeuSer : 40 ||||||||||||!!!||| !||| !:!!|||:!! !! ! !!|||!.!|||:!! ! ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheGlyAsnAlaAlaIleLeu 21089 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCGGAAACGCGGCGATTCTG : 21148 41 : TyrThrLeuPheAlaValLeuLeuSerLeuSerThrGluAlaArgAspLeuTyrPheSer : 60 ||||||:!! !!.!!|||!!!!!! !:!!!!! !:!! !|||! |||||||||||| TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSer 21149 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGACTTTATTTCTCC : 21208 61 : TrpGlyAsp : 63 ||||||:!! TrpGlyAsn 21209 : TGGGGAAAC : 21219 vulgar: gi|350397203|ref|XP_003484804.1| 0 63 . KQ414828.1 21030 21219 + 133 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21031 21219 133 + . gene_id 12 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 21031 21219 . + . KQ414828.1 exonerate:protein2genome:local exon 21031 21219 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21031 21219 133 + . alignment_id 12 ; Query gi|350397203|ref|XP_003484804.1| ; Align 21031 1 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397295|ref|XP_003484831.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1268 Query range: 0 -> 410 Target range: 15100 -> 19921 1 : MetSerPheLeuLysSerHisAspIleSerIleSerLeuThrSerThrPheMetLysLeu : 20 |||||| !!!!! !!! !!||||||||||||||||||||||||..!|||||||||:!! MetSerSerPheThrThrAspAspIleSerIleSerLeuThrSerValPheMetLysIle 15101 : ATGAGTAGTTTCACCACCGATGACATATCAATCAGCCTGACGTCCGTTTTCATGAAGATC : 15158 21 : IleGlyIleTrpThrSerLysAsnGlnMetGluArgArgValArgLeuIleThrLeuIle : 40 :!!|||:!:|||! !:!!..!|||!::.!.|||!:!||||||||| !||||||||| ! ValGlyLeuTrpMetAlaSerAsnArgPheGluGlnArgValArgAsnIleThrLeuCys 15159 : GTTGGACTGTGGATGGCGTCGAACCGTTTCGAGCAACGAGTACGAAATATCACGCTGTGT : 15218 41 : TyrAlaPheSerIleIleLeuPheAlaLeuTrpIleGluIleThrAspThrTyrTyrSer : 60 |||.!!.!.! ! |||||||||||||||||||||:!!!!:|||||| !||||||||| TyrThrLeuIleAlaIleLeuPheAlaLeuTrpIleGlnMetThrAspLeuTyrTyrSer 15219 : TACACGCTGATCGCGATTCTCTTCGCCCTGTGGATACAAATGACGGATTTGTATTACTCG : 15278 61 : PheAspAspLeuSer >>>> Target Intron 1 >>>> ThrArgIleTyrAsnV : 71 !::! |||!!!.!! 891 bp .!! !!:!!|||!.!! TrpGlyAspPheGly++ ++AlaCysLeuTyrThrA 15279 : TGGGGAGATTTTGGTgt.........................agGCCTGTTTATATACTG : 16202 72 : alCysAsnIleLeuAlaValLeuMetProLeuLeuLysMetThrValLeuLeuAlaHisL : 91 .!||||||||||||:!!:!! !!!:|||!!!||||||!!: !|||||||||||||||| laCysAsnIleLeuSerLeuThrIleProPheLeuLysIleLeuValLeuLeuAlaHisL 16203 : CATGCAACATTTTATCGTTAACAATACCGTTTCTCAAGATACTCGTCTTGCTTGCAcaca : 16262 92 : ysGlnGluPhePheHisLeuIleValTyrThrGlnArgArgPheTrpHisGluAsnTyrA : 111 ||...:::|||||||||||||||:!!:!! !||||||..!|||! !|||! !:!!|||| ysAsnAspPhePheHisLeuIleLeuHisLeuGlnArgGluPheLeuHisAlaAspTyrA 16263 : aaaatgatttttttcatttgattcTGCACCTACAACGAGAATTCTTGCATGCAGATTACG : 16322 112 : spGluAspGluLysLysIleTyrMetAspCysLysArgLysCysThrValPheValCysP : 131 ||!!: !!||||||||||||! :!:! !|||:!!|||:!!|||||| !!|||||||||| spAspTyrGluLysLysIleLeuLeuGlyCysGlnArgGlnCysThrPhePheValCysP 16323 : ACGACTACGAGAAAAAGATTTTGCTCGGTTGCCAACGTCAATGTACCTTCTTCGTTTGTT : 16382 132 : heValIlePheThrThrLysAlaThrLeuIleCysTyrAlaLeuSerProIleLeu{G} : 150 || !!! !.!! !||||||!.!|||:!!|||! ||| !:!!!:!|||:!!:!!{!} hePheThrLeuPheThrLysGlyThrValIleSerTyrIleValAsnProLeuIle{A}+ 16383 : TCTTCACACTTTTCACTAAAGGAACTGTTATCTCGTACATCGTTAATCCGCTTATT{G}g : 16440 151 : >>>> Target Intron 2 >>>> {lu}AsnIleGlyArgAsnGluSerAspArgG : 160 1386 bp { !}|||||||||:::|||||||||!!:||| + ++{la}AsnIleGlyLysAsnGluSerGluArgI 16441 : t.........................ag{ca}aatattggaaaaaatgagTCAGAGAGGA : 17855 161 : luLeuProPheAsnMetTrpIleAspLeuProLeuThrAlaThrProTyrTyrGluIleT : 180 !||||||||||||||||||:!!:!!|||||||||:!! !||||||||||||||||||| leLeuProPheAsnMetTrpValAsnLeuProLeuSerMetThrProTyrTyrGluIleT 17856 : TACTTCCATTTAATATGTGGGTCAACTTGCCATTATCAATGACGCCATATTACgaaataa : 17915 181 : hrLeuLeuLeuGln >>>> Target Intron 3 >>>> LeuMetAlaLeuTyrTy : 190 ||... |||||| 110 bp ::!:!!:!!||||||:! hrPheSerLeuGln++ ++ValLeuSerLeuTyrHi 17916 : ctttttcattaCAGgt.........................aggtTCTGTCTCTGTACCA : 18055 191 : rValGlyValGlyTyrPheCysPheAspAsnLeuLeuCysValMetSerLeuHisLeuAl : 210 !:!!||||||.!!||||||||||||||||||...||||||::!|||!:!|||||| !|| sIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisAlaAl 18056 : TATTGGCGTGAGTTATTTCTgcttcgacaattttttatgcatCATGAACTTGCACGCGGC : 18115 211 : aThrGlnPheGlnIleLeuGlnTyrLysMetSerArgMetThrAspLeuThrAsnLysGl : 230 ||||||||||!:!:!!|||||||||::!|||:!!!.!||||||||||||! !:::||||| aThrGlnPheArgValLeuGlnTyrArgMetAlaAsnMetThrAspLeuLysAspLysGl 18116 : TACTCAGTTTCGAGTATTGCAATACCGAATGGCGAATATGACCGATTTAAAGGacaaaga : 18175 231 : uLysGlyGluThrAsn<-><->ProGlnLeuPheSerGlySerSerAlaAsnLysCysTy : 248 |::: ||| ||| !!...:!! !|||!.!!!!! !|||!..:!!||||| uArgLysGluArgAsnMetLysThrSerValSerSerAlaCysPheAlaThrGluCysTy 18176 : gaggaaagagagaaatatgaAGACAAGTGTGAGTTCGGCGTGCTTTGCAACAGAATGTTA : 18235 249 : rThrAlaPheLysLysTyrIleGlnGlnHisGlnAlaLeuIleAlaTyrCysArgLysLe : 268 |!.!!.!.!!||| ! ||||||::!||||||||| !|||||||||||||||!.!||||| rAsnValLeuLysAspTyrIleArgGlnHisGlnAsnLeuIleAlaTyrCysAsnLysLe 18236 : CAACGTTCTCAAAGATTATATCAGACAGCATCAGAACCTGATTGCTTATTGCAACAAACT : 18295 269 : uGluSerValPheAsnLeuProValLeuValGlnValLeuAlaPheSerLeuValMetCy : 288 ||||!.!|||||||||:!! !||||||! !|||:!!||| !||||||:!!:!!!!:|| uGluLysValPheAsnIleIleValLeuGlyGlnLeuLeuMetPheSerMetLeuIleCy 18296 : CGAGAAAGTGTTCAATATCATTGTTCTGGGGCAATTGTTAATGTTCAGCATGTTGATCTG : 18355 289 : sLeuAspGlyTyrGlnIleLeuMet >>>> Target Intron 4 >>>> ProGly : 298 ||||||||||!:!|||||||||||| 975 bp !!..! sLeuAspGlyPheGlnIleLeuMet++ ++AlaAsn 18356 : TCTCGATGGATTTCAGATACTTATGgt.........................agGCAAAT : 19360 299 : AlaProThrArgThrArgPheIlePheSerPheGlnLeuIleAlaCysLeuCysGlnLeu : 318 .!!|||||||||||||||.!.||||||! !|||!!.:!! !||||||:!!||||||||| ThrProThrArgThrArgLeuIlePheIlePheHisIleGlyAlaCysMetCysGlnLeu 19361 : ACACCTACCAGAACCCGACTGATTTTCATCTTTCACATAGGAGCATGCATGTGTCAATTG : 19420 319 : LeuMetPheThrTyrSerCysAspCysIleMetGlnGluSerThrSerValAlaLeuAla : 338 ||||||||||||||||||||||||||||||!!:::!||||||||||||..!||| !||| LeuMetPheThrTyrSerCysAspCysIleIleArgGluSerThrSerThrAlaGluAla 19421 : CTGATGTTTACCTACAGCTGCGACTGCATCATAAGAGAAAGCACGAGCACCGCCGAGGCG : 19480 339 : ValTyrLysGlyProTrpSerPheLeuProAlaThrGluSerGlyMetMetMetArgLys : 358 ||||||!..|||||||||!!!.!!|||||| !!:!! !..!|||! |||!!:|||||| ValTyrSerGlyProTrpThrLeuLeuProMetSerAlaAspGlyLysMetIleArgLys 19481 : GTGTACAGCGGTCCCTGGACACTTTTACCAATGAGCGCAGACGGAAAAATGATAAGGAAA : 19540 359 : AspLeuIleLeuValThrIleArgSerGlyValProCysCysIleThrGlyTyrGlyPhe : 378 ||||||!!:||||||! !!!:||||||.!!||||||||||||:!:|||!.! |||||| AspLeuMetLeuValIleMetArgSerSerValProCysCysLeuThrAlaArgGlyPhe 19541 : GATTTGATGCTCGTTATCATGAGATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTC : 19600 379 : PheValValSerLeuGluThrTyrThrArg >>>> Target Intron 5 >>>> V : 389 ||||||||||||||||||||||||||| !! 223 bp | PheValValSerLeuGluThrTyrThrGly++ ++V 19601 : TTCGTCGTGTCTTTAGAAACGTACACAGGGgt.........................agG : 19856 390 : alLeuSerThrAlaValSerTyrPheThrLeuLeuArgGlnThrThrGlnGluThrLeuA : 409 ||||||||||||||!.!||||||||||||||||||!:!|||! !:!!:!!.!..!! !! alLeuSerThrAlaAlaSerTyrPheThrLeuLeuLysGlnArgSerGluAsnAlaAspS 19857 : TTTTAAGCACCGCAGCCTCATACTTTACGTTGCTGAAGCAAAGATCAGAGAATGCCGACA : 19916 410 : snSer : 410 :!||| erSer 19917 : GTTCG : 19921 vulgar: gi|350397295|ref|XP_003484831.1| 0 410 . KQ414828.1 15100 19921 + 1268 M 65 195 5 0 2 I 0 887 3 0 2 M 84 252 S 0 1 5 0 2 I 0 1382 3 0 2 S 1 2 M 34 102 5 0 2 I 0 106 3 0 2 M 51 153 G 0 6 M 61 183 5 0 2 I 0 971 3 0 2 M 92 276 5 0 2 I 0 219 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15101 19921 1268 + . gene_id 1 ; sequence gi|350397295|ref|XP_003484831.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 15101 15295 . + . KQ414828.1 exonerate:protein2genome:local exon 15101 15295 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 15296 15297 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 15296 16186 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 16185 16186 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 16187 16439 . + . KQ414828.1 exonerate:protein2genome:local exon 16187 16439 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 16440 16441 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 16440 17825 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 17824 17825 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 17826 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17826 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 2 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18381 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19921 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19921 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15101 19921 1268 + . alignment_id 1 ; Query gi|350397295|ref|XP_003484831.1| ; Align 15101 1 195 ; Align 16187 66 252 ; Align 17828 151 102 ; Align 18040 185 153 ; Align 18199 236 183 ; Align 19357 297 276 ; Align 19856 389 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397295|ref|XP_003484831.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 787 Query range: 57 -> 410 Target range: 31946 -> 34325 58 : TyrTyrSerPheAspAspLeuSerThrArgIleTyrAsnValCysAsnIleLeuAlaVal : 77 ||| ||| |||.....! !!!!:|||! !.!||||||! !:!!|||:!! TyrVal***PheLeuPheLeuGlnValCysMetTyrMetAlaCysAsnSerIleAlaLeu 31947 : TACGtctaatttctatttcttcagGTTTGCATGTACATGGCATGCAACAGTATAGCCCTG : 32004 78 : LeuMetProLeuLeuLysMetThrValLeuLeuAlaHisLysGlnGluPhePheHisLeu : 97 :!!:!! !:!!:!!|||!!: !||||||:!!!.!!..|||:!!:!!|||.!! !||| ValLeuAspIleIleLysIlePheValLeuValValArgLysLysLysPheLeuGlyLeu 32005 : GTTTTGGATATAATCAAGATTTTCGTCCTAGTCGTACGGAAGAAAAAGTTTCTCGGTCTG : 32064 98 : IleValTyrThrGlnArgArgPheTrpHisGluAsnTyrAspGluAspGluLysLysIle : 117 |||! !|||! |||:::...|||:::||| |||||||||:!!||||||!!....||| IleGluTyrMetGlnLysAsnPhePheHisLeuAsnTyrAspGlnAspGluAsnSerIle 32065 : ATTGAGTACATgcagaagaatttctttcatttgaaCTACGATCAGGACGAGAATTCTATT : 32124 118 : TyrMetAspCysLysArgLysCysThrValPheValCysPheValIlePheThrThrLys : 137 ! !!...||||||! !|||! ! !||||||||| !! !! !||| !:!!:!! IleAlaHisAlaLysArgThrCysIleTyrPheValCysValPheSerPheCysSerGln 32125 : ATCGCACACGCGAAACGAACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTTCTCAA : 32184 138 : AlaThrLeuIleCysTyrAlaLeuSerProIleLeu{G} >>>> Target Intron : 150 :!!|||:!!.!!! !||| !:!!!!!|||.!!:!!{.} 170 bp SerThrValPheSerTyrIleIleArgProPheVal{S}++ 32185 : TCTACAGTTTTTTCCTATATAATAAGGCCATTTGTA{T}gt................... : 32226 151 : 1 >>>> {lu}AsnIleGlyArgAsnGluSerAspArgGluLeuProPheAsnMetTrp : 166 {.!}|||:!!|||!:!||||||||||||||||||! ! !!:!:!!|||||| ++{er}AsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrp 32227 : ......ag{ca}AATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGG : 32441 167 : IleAspLeuProLeuThrAlaThrProTyrTyrGluIleThrLeuLeuLeuGln >>>> : 185 :!!||||||||||||:!!!.!||||||||||||||||||||| !:!!:!!||| LeuAspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGln++ 32442 : CTCGATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGgt.... : 32500 186 : Target Intron 2 >>>> LeuMetAlaLeuTyrTyrValGlyValGlyTyrPheC : 197 307 bp !:!::!!:!!||| ! ||||||||| !!|||.!!| ++AlaLeuSerValTyrGlnValGlyValCysTyrLeuC 32501 : .....................agGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTT : 32841 198 : ysPheAspAsnLeuLeuCysValMetSerLeuHisLeuAlaThrGlnPheGlnIleLeuG : 217 |||||||||||:::... :::||| !||||||:!!||| !||||||!::||||||| ysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuG 32842 : GCTttgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTAC : 32901 218 : lnTyrLysMetSerArgMetThrAspLeuThrAsnLysGluLysGlyGluThrAsnProG : 237 |||||!:!!!::!!!.!:!!:!!! !|||!:!.!.! !! !|||.!!.!. !||| !!. lnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerAsnAspAsnThrS 32902 : AATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACAA : 32961 238 : lnLeuPheSerGlySerSerAlaAsnLysCysTyrThrAlaPheLysLysTyrIleGlnG : 257 .. ! :!!! !! !! !:!!.!.|||||||||! ! !||||||!!.! !||||||| erThr---AlaGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnG 32962 : GCACG---GCTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAAC : 33018 258 : lnHisGlnAlaLeuIleAlaTyrCysArgLysLeuGluSerValPheAsnLeuProValL : 277 ||||||||||||||||| :::|||... ||||||..!||||||!..:!! !|||| lnHisGlnAlaLeuIleGluPheCysGluIleLeuGluGluValPheThrValIleValL 33019 : AACATCAGGCACTaattgaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTAC : 33078 278 : euValGlnValLeuAlaPheSerLeuValMetCysLeuAspGlyTyrGlnIleLeuMet : 297 ||! !||||||||| !||||||:!!:!!!!:|||!!!! !||||||:!!:!!|||:!! euGlyGlnValLeuMetPheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeu+ 33079 : TCGGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGg : 33138 298 : >>>> Target Intron 3 >>>> ProGlyAlaProThrArgThrArgPheIlePh : 307 406 bp ! ! !||| !..!:!!||| !! !|| + ++IleThrLeuProPheGluSerArgValAlaPh 33139 : t.........................agATAACGTTACCATTTGAATCGCGCGTTGCTTT : 33574 308 : eSerPheGlnLeuIleAlaCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCy : 327 |!!!! ! ||||||.!! !!:!! !!||||||! !||||||||||||||||||:!!|| eThrCysPheLeuIleThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAsnCy 33575 : CACGTGCTTCTTGATTACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCAATTG : 33634 328 : sIleMetGlnGluSerThrSerValAlaLeuAlaValTyrLysGlyProTrpSerPheLe : 347 ||||! !|||||| !!:!:!!||| !:!!|||||| |||||||||! ! !|| sIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLe 33635 : CATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTT : 33694 348 : uProAlaThrGluSerGlyMetMetMetArgLysAspLeuIleLeuValThrIleArgSe : 367 |||| ::: ||| ::::!:|||||||||||| !:!!:!!! !:!:|||:! uProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAl 33695 : ACCAATggataaatttggaaaactgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGC : 33754 368 : rGlyValProCysCysIleThrGlyTyrGlyPhePheValValSerLeuGluThrTyrTh : 387 ! !! !|||! !..!:!:|||!.!! !||||||||| !:!!!!!|||||||||!:!|| aArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleThrLeuGluThrPheTh 33755 : GAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTAC : 33814 388 : rArg >>>> Target Intron 4 >>>> ValLeuSerThrAlaValSerTyrPhe : 397 |!:! 440 bp :!!:!!||||||:!!:!!||||||||| rLys++ ++IleMetSerThrSerMetSerTyrPhe 33815 : TAAGgt.........................agATCATGAGTACATCAATGTCGTATTTC : 34284 398 : ThrLeuLeuArgGlnThrThrGlnGluThrLeuAsnSer : 410 |||||||||!:!|||!:!.!!:!!!!:|||:!!|||||| ThrLeuLeuLysGlnSerAlaGluAspThrValAsnSer 34285 : ACCCTACTAAAACAAAGTGCCGAGGACACAGTAAATTCG : 34325 vulgar: gi|350397295|ref|XP_003484831.1| 57 410 . KQ414828.1 31946 34325 + 787 M 92 276 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 34 102 5 0 2 I 0 303 3 0 2 M 54 162 G 1 0 M 57 171 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31947 34325 787 + . gene_id 2 ; sequence gi|350397295|ref|XP_003484831.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 31947 32223 . + . KQ414828.1 exonerate:protein2genome:local exon 31947 32223 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32224 32225 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32224 32393 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32392 32393 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 32394 32497 . + . KQ414828.1 exonerate:protein2genome:local exon 32394 32497 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32498 32499 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32498 32804 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 32803 32804 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32805 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32805 33137 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 4 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34325 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34325 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31947 34325 787 + . alignment_id 2 ; Query gi|350397295|ref|XP_003484831.1| ; Align 31947 58 276 ; Align 32396 151 102 ; Align 32805 185 162 ; Align 32967 240 171 ; Align 33544 297 276 ; Align 34260 389 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397295|ref|XP_003484831.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 677 Query range: 150 -> 407 Target range: 2882 -> 6474 151 : AsnIleGlyArgAsnGluSerAspArgGluLeuProPheAsnMetTrpIleAspLeuProLe : 171 !::||||||:::||||||||||||||| !||| ! !!|||.!.|||||||||||||||:! SerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuProIl 2883 : AgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCCGAT : 2943 172 : uThrAlaThrProTyrTyrGluIleThrLeuLeuLeuGln >>>> Target Intron 1 : 185 !||| !|||||||||||||||||| ... :!!||| 406 bp eThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2944 : AACCATCACACCATactatgaaatattatttacgaTACAGgt.................... : 2987 186 : >>>> LeuMetAlaLeuTyrTyrValGlyValGlyTyrPheCysPheAspAsnLeuLeuC : 203 :!!.!. !:!! |||||| !!:!!.!!|||.!!|||.!!||||||!!!|||| ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheLeuC 2988 : .....agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTCTGT : 3445 204 : ysValMetSerLeuHisLeuAlaThrGlnPheGlnIleLeuGlnTyrLysMetSerArgMet : 223 ||:!!!!:!:!|||||| !||||||||||||!:!||||||||||||!:!:!!|||!.!:!! ysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnVal 3446 : GCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAATGTG : 3505 224 : ThrAspLeuThrAsnLysGluLysGlyGluThrAsnProGlnLeuPheSerGlySerSerAl : 244 !! ! .!!|||:!!...!.. ::: ::: ::: ::: !|||!:!:! CysGly---AlaAsnGluArgSerAspLysIleSerLysLys------ThrProSerAsnSe 3506 : TGCGGT---GCAAACGAACGTAgcgataaaatttcgaaaaaa------acaCCGTCCAATTC : 3559 245 : aAsnLysCysTyrThrAlaPheLysLysTyrIleGlnGlnHisGlnAlaLeuIleAlaTyrC : 265 !:!!:!!||||||.!! !||||||!!.! !||||||||||||||||||||||||! !|||| rAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrC 3560 : GGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACT : 3622 266 : ysArgLysLeuGluSerValPheAsnLeuProValLeuValGlnValLeuAlaPheSerLeu : 285 ||!.!||||||:!!..!||||||..!:!! !||||||!.!||||||||| !||||||||| ysAsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeu 3623 : GTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTG : 3682 286 : ValMetCysLeuAspGlyTyrGlnIleLeuMet >>>> Target Intron 2 >>>> : 297 :!!|||||||||||||||||| :!::!!||| 457 bp LeuMetCysLeuAspGlyTyr---LeuValMet++ ++ 3683 : TTAATGTGCCTCGATGGATAT---TTGGTGATGgt.........................ag : 4170 298 : ProGlyAlaProThrArgThrArgPheIlePheSerPheGlnLeuIleAlaCysLeuCysGl : 317 !! !.!!|||! !! ! !|||.!!! !|||! !|||!!.|||! !.!||||||||||| GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGl 4171 : GAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCA : 4232 318 : nLeuLeuMetPheThrTyrSerCysAspCysIleMetGlnGluSerThrSerValAlaLeuA : 338 |||||||||||||||||||||||||||||||:!:!!:!:!|||||| !!:!|||||| !| nLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnA 4233 : ACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATG : 4295 339 : laValTyrLysGlyProTrpSerPheLeuProAlaThrGluSerGlyMetMetMetArgLys : 358 ||:!!||| ! !! !!|||! ! !|||||| ! !..!|||||| |||:!!|||||| laIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLys 4296 : CTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAA : 4355 359 : AspLeuIleLeuValThrIleArgSerGlyValProCysCysIleThrGlyTyrGlyPhePh : 379 ||||||! !!!!|||! ! !|||||| !!||||||||||||:!!|||!.!! !|||||||| AspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePh 4356 : GATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTT : 4418 380 : eValValSerLeuGluThrTyrThrArg >>>> Target Intron 3 >>>> ValLe : 390 | !||||||||||||||||||||| ! 1970 bp |||:! eProValSerLeuGluThrTyrThrSer++ ++ValIl 4419 : CCCTGTGTCACTGGAAACGTACACTTCGgt.........................agGTTAT : 6421 391 : uSerThrAlaValSerTyrPheThrLeuLeuArgGlnThrThrGlnGluThr : 407 !|||||||||||||||||||||||||||||||||||| !! !:!!!!:!:! eSerThrAlaValSerTyrPheThrLeuLeuArgGlnArgIleGluAspSer 6422 : AAGTACAGCAGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAGGACAGC : 6474 vulgar: gi|350397295|ref|XP_003484831.1| 150 407 . KQ414828.1 2882 6474 + 677 M 34 102 5 0 2 I 0 402 3 0 2 M 41 123 G 1 0 M 11 33 G 2 0 M 53 159 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2883 6474 677 + . gene_id 3 ; sequence gi|350397295|ref|XP_003484831.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2883 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2883 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 0 ; deletions 4 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6474 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6474 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2883 6474 677 + . alignment_id 3 ; Query gi|350397295|ref|XP_003484831.1| ; Align 2883 151 102 ; Align 3391 185 123 ; Align 3514 227 33 ; Align 3547 240 159 ; Align 3706 294 9 ; Align 4172 297 276 ; Align 6418 389 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397295|ref|XP_003484831.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 449 Query range: 184 -> 410 Target range: 10831 -> 13170 185 : LeuMetAlaLeuTyrTyrValGlyValGlyTyrPheCysPheAspAsnLeuLeuCysVal : 204 :!! !.!||||||!:!..!|||:!! !!||||||||||||||||||:!!!!!|||:!! IleSerGlyLeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIle 10832 : ATTTCAGGACTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATC : 10889 205 : MetSerLeuHisLeuAlaThrGlnPheGlnIleLeuGlnTyrLysMetSerArgMetThr : 224 ||||||:!!||||||::! !||||||!::||||||||||||!:!:!!!!!!:!:!!:!! MetSerValHisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSer 10890 : ATGAGCGTGCATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCC : 10949 225 : AspLeuThrAsnLysGluLysGlyGluThrAsnProGlnLeuPheSerGlySerSerAla : 244 |||:!! .!. ! :!!! !...||| ||| ::: ! ! ! !! !..!!!!.!! AspVal---GlnTyrGlnIleSerGluLysAsnMetGluSerValLeuGluAspCysThr 10950 : GACGTA---CAATATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACA : 11006 245 : AsnLysCysTyrThrAlaPheLysLysTyrIleGlnGlnHisGlnAlaLeuIleAlaTyr : 264 ..!!:!! !||| ! !||||||!..|||:!!!:!|||||||||.!!||||||! !||| ArgArgSerTyrGluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyr 11007 : CGTAGATCTTACGAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTAT : 11066 265 : CysArgLysLeuGluSerValPheAsnLeuProValLeuValGlnValLeuAlaPheSer : 284 ! !..!||||||||| !|||!:!!.. ! !:!!|||! !||||||||| !|||||| TyrGluLysLeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSer 11067 : TACGAGAAGCTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGT : 11126 285 : LeuValMetCysLeuAspGlyTyrGlnIleLeuMetProGly >>>> Target Intr : 299 :!!:!!!!:|||||| !|||||||||||||||:!! !.!! 1299 bp ValLeuIleCysLeuPheGlyTyrGlnIleLeuLeuValSer-+ 11127 : GTGTTAATTTGCCTCTTTGGTTATCAGATATTATTGGTTAGTat................ : 11173 300 : on 1 >>>> AlaProThrArgThrArgPheIlePheSerPheGlnLeuIleAlaCysL : 315 ||| !||| ! ! ! ! !! !|||..!!!!:!! !||| ++AlaAsnThrSerLeuAlaArgArgSerIlePheMetPheLeuIleCysG 11174 : .........agGCTAATACTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGTG : 12518 316 : euCysGlnLeuLeuMetPhe<-><->ThrTyrSerCysAspCysIleMetGlnGluSerT : 333 !..!..!:!!|||:!!||| ||||||||||||:!! :!:!!::!!:!!||| lyAlaMetValLeuLeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerA 12519 : GCGCCATGGTTTTATTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCG : 12578 334 : hrSerValAlaLeuAlaValTyrLysGlyProTrpSerPheLeuProAlaThrGluSerG : 353 !!:!:!!|||!!!|||!.!|||..!!.!! !|||!!! !:!!||| !!.!:!!!!!| spAsnIleAlaPheAlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrG 12579 : ATAATATTGCTTTTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTG : 12638 354 : lyMetMetMetArgLysAspLeuIleLeuValThrIleArgSerGlyValProCysCysI : 373 ||! ! !:!:||| ! |||||||||:!!|||! ! |||||| !! ! !||||||: lyLysLysLeuArgHisAspLeuIleMetValIleGlyArgSerArgArgValCysCysL 12639 : GCAAAAAGCTACGGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTC : 12698 374 : leThrGlyTyrGlyPhePheValValSerLeuGluThrTyrThrArg >>>> Target : 389 !:|||!.! !!||||||||| !|||||||||||||||||||||! ! 3 euThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrThr++ 12699 : TGACTGCGAATGGATTTTTCCCTGTGTCCTTAGAAACTTATACTACGgt........... : 12748 390 : Intron 2 >>>> ValLeuSerThrAlaValSerTyrPheThrLeuLeuArgGlnTh : 403 59 bp :::||||||||||||!.!|||||||||||||||||||||.!.!. ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnAs 12749 : ..............agattttgAGTACCGCGGCGTCGTACTTCACATTATTGAGAAATAA : 13147 404 : rThrGlnGluThrLeuAsnSer : 410 !..!:!!!!:..!:!!!!.:!! nValGluAspValValLysAla 13148 : CGTAGAAGATGTAGTTAAAGCA : 13170 vulgar: gi|350397295|ref|XP_003484831.1| 184 410 . KQ414828.1 10831 13170 + 449 M 42 126 G 1 0 M 71 213 5 0 2 I 0 1295 3 0 2 M 23 69 G 0 6 M 67 201 5 0 2 I 0 355 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10832 13170 449 + . gene_id 4 ; sequence gi|350397295|ref|XP_003484831.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 10832 11170 . + . KQ414828.1 exonerate:protein2genome:local exon 10832 11170 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 11171 11172 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 11171 12469 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12468 12469 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 12470 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12745 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13104 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13103 13104 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 13105 13170 . + . KQ414828.1 exonerate:protein2genome:local exon 13105 13170 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10832 13170 449 + . alignment_id 4 ; Query gi|350397295|ref|XP_003484831.1| ; Align 10832 185 126 ; Align 10958 228 213 ; Align 12470 299 69 ; Align 12545 322 201 ; Align 13105 389 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397295|ref|XP_003484831.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 421 Query range: 181 -> 410 Target range: 22716 -> 24205 182 : LeuLeuGlnLeuMetAlaLeuTyrTyrValGlyValGlyTyrPheCysPheAspAsnLeu : 201 ||| !||| !:!::!!:!!||| ! |||.!!!.! !!|||.!!||||||||| ::: LeuThrGlnAlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIle 22717 : ctCACGCAGGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatt : 22774 202 : LeuCysValMetSerLeuHisLeuAlaThrGlnPheGlnIleLeuGlnTyrLysMetSer : 221 ... :::::: ||||||:!!||| !||||||!::||||||||||||!:!!!::!! PhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAla 22775 : tttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCC : 22834 222 : ArgMetThrAspLeuThrAsnLysGluLysGlyGluThrAsnProGlnLeuPheSerGly : 241 !.!:!!:!!! !|||!:!.!.! !! !|||.!!... !||||||... ! ..!! ! AsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSerThr---AspGlu 22835 : AATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACA---GATGAA : 22891 242 : SerSerAlaAsnLysCysTyrThrAlaPheLysLysTyrIleGlnGlnHisGlnAlaLeu : 261 ! !! !:!!.!.|||||||||! ! !||||||!!.! !||||||||||||||||||||| LeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeu 22892 : TTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTA : 22951 262 : IleAlaTyrCysArgLysLeuGluSerValPheAsnLeuProValLeuValGlnValLeu : 281 |||! !!:!||| !! !||||||..!||||||!..:!! !||||||! !||||||||| IleGluPheCysAlaThrLeuGluGluValPheThrValIleValLeuGlyGlnValLeu 22952 : ATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCTA : 23011 282 : AlaPheSerLeuValMetCysLeuAspGlyTyrGlnIleLeuMetProGlyAlaProThr : 301 !! !|||:!!:!!!!:|||!!! !|||||||||:!!|||:!! !.!! ! !!:! MetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeuValSerIleGluSer 23012 : ATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGGTGAGTATCGAAAGC : 23071 302 : Arg{T} >>>> Target Intron 1 >>>> {hr}ArgPheIlePheSerPheGln : 310 !{|} 492 bp {||}||| !! !|||:!!! ! Tyr{T}-+ +-{hr}ArgValAlaPheAlaCysPhe 23072 : TAT{A}at.........................at{CG}CGCGTTGCTTTCGCGTGCTTC : 23590 311 : LeuIleAlaCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleMetGln : 330 |||!!: ! !!:!! !!||||||! !|||||||||||||||||||||||||||! ! LeuMetMetGlyMetSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThr 23591 : TTGATGATGGGCATGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCATAACAACA : 23650 331 : GluSerThrSerValAlaLeuAlaValTyrLysGlyProTrpSerPheLeuProAlaThr : 350 |||||| !!:!:!!||| !:!!|||||| |||||||||! ! !|||||| ! ! GluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAsp 23651 : GAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATGGAC : 23710 351 : GluSerGlyMetMetMetArgLysAspLeuIleLeuValThrIleArgSerGlyValPro : 370 :!!! !|||! :!!:!:||||||!!:||| !:!!:!!! !:!:|||:!! !! !||| LysPheGlyLysLeuLeuArgLysGluLeuGlnMetLeuIleLeuArgAlaArgArgPro 23711 : AAATTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGGGCGAGACGACCT : 23770 371 : CysCysIleThrGlyTyrGlyPhePheValValSerLeuGluThrTyrThrArgValLeu : 390 ! !..!:!:|||!.!! !||||||||| !:!!||||||||||||!:!|||!:!|||!!! SerAlaLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysValPhe 23771 : TCCGCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTATTT : 23830 391 : {Se} >>>> Target Intron 2 >>>> {r}ThrAlaValSerTyrPheThrLeu : 399 {!:} 313 bp {!}|||:!!:!!||||||||||||||| {As}-+ ++{n}ThrSerMetSerTyrPheThrLeu 23831 : {AA}at.........................ag{T}ACATCAATGTCGTATTTCACATTA : 24170 400 : LeuArgGlnThrThrGlnGluThrLeuAsnSer : 410 |||!:!||| !! !:!!!!:|||:!!|||||| LeuLysGlnCysIleGluAspThrValAsnSer 24171 : TTAAAACAATGTATCGAGGACACGGTAAATTCG : 24205 vulgar: gi|350397295|ref|XP_003484831.1| 181 410 . KQ414828.1 22716 24205 + 421 M 57 171 G 1 0 M 63 189 S 0 1 5 0 2 I 0 488 3 0 2 S 1 2 M 87 261 S 0 2 5 0 2 I 0 309 3 0 2 S 1 1 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22717 24205 421 + . gene_id 5 ; sequence gi|350397295|ref|XP_003484831.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22717 23077 . + . KQ414828.1 exonerate:protein2genome:local exon 22717 23077 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 23078 23079 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 23078 23569 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 23568 23569 . + . intron_id 0 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local cds 23570 23834 . + . KQ414828.1 exonerate:protein2genome:local exon 23570 23834 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23835 23836 . + . intron_id 2 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 23835 24147 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 24146 24147 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 24148 24205 . + . KQ414828.1 exonerate:protein2genome:local exon 24148 24205 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22717 24205 421 + . alignment_id 5 ; Query gi|350397295|ref|XP_003484831.1| ; Align 22717 182 171 ; Align 22888 240 189 ; Align 23572 304 261 ; Align 24149 392 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397295|ref|XP_003484831.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 284 Query range: 67 -> 189 Target range: 21897 -> 22433 68 : IleTyrAsnValCysAsnIleLeuAlaValLeuMetProLeuLeuLysMetThrValLeu : 87 !!:|||! !.!||||||! !||||||:!!:!!:!! !:!!:!!|||!!: !|||||| MetTyrMetAlaCysAsnSerLeuAlaLeuValLeuAspIleIleLysIlePheValLeu 21898 : ATGTACATGGCATGCAACAGTTTAGCCCTGGTTTTGGATATAATCAAGATTTTCGTCCTA : 21955 88 : LeuAlaHisLysGlnGluPhePheHisLeuIleValTyrThrGlnArgArgPheTrpHis : 107 |||!.!!..|||:!!:!!|||.!! !||||||! !|||! !|||!:!!.!||||||||| LeuValArgLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheTrpHis 21956 : CTCGTACGGAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTTTGGCAT : 22015 108 : GluAsnTyrAspGluAspGluLysLysIleTyrMetAspCysLysArgLysCysThrVal : 127 !|||||||||:!!||||||!!....||| ! !!...||||||! !|||! ! ! LeuAsnTyrAspGlnAspGluAsnSerIleIleAlaHisAlaLysArgThrCysIleTyr 22016 : TTGAACTACGACCAGGACGAGAATTCTATTATCGCACACGCGAAACGAACGTGCATCTAC : 22075 128 : PheValCysPheValIlePheThrThrLysAlaThrLeuIleCysTyrAlaLeu{Se} : 146 ||||||||| !! !! !||| !:!!:!!:!!|||:!!.!!! !||| !:!!{||} PheValCysValPheSerPheCysSerGlnSerThrValPheSerTyrIleIle{Se}+- 22076 : TTCGTCTGCGTCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTATATAATA{AG}gc : 22134 147 : >>>> Target Intron 1 >>>> {r}ProIleLeuGluAsnIleGlyArgAsnGlu : 156 170 bp {|} |||||| |||:!!|||!:!|||||| +-{r}PheIleLeuAlaAsnLeuGlyLysAsnGlu 22135 : .........................aa{t}tttattttagcaAATCTTGGAAAGAATGAA : 22332 157 : SerAspArgGluLeuProPheAsnMetTrpIleAspLeuProLeuThrAlaThrProTyr : 176 ||||||||||||! ! !!:!:!!||||||:!!||||||||||||:!!!.!||||||||| SerAspArgGluHisIleTyrAspMetTrpLeuAspLeuProLeuSerValThrProTyr 22333 : TCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCATTATCCGTAACAccatat : 22392 177 : TyrGluIleThrLeuLeuLeuGlnLeuMetAlaLeuTyr : 189 |||||||||||| !:!!:!!|||:!!:!: !!:!!!:! TyrGluIleThrTyrIleIleGlnValLeuProIlePhe 22393 : tatgaaattacttACATAATACAGGTATTACCAATTTTC : 22433 vulgar: gi|350397295|ref|XP_003484831.1| 67 189 . KQ414828.1 21897 22433 + 284 M 78 234 S 0 2 5 0 2 I 0 166 3 0 2 S 1 1 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21898 22433 284 + . gene_id 6 ; sequence gi|350397295|ref|XP_003484831.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 21898 22133 . + . KQ414828.1 exonerate:protein2genome:local exon 21898 22133 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22134 22135 . + . intron_id 1 ; splice_site "GC" KQ414828.1 exonerate:protein2genome:local intron 22134 22303 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22302 22303 . + . intron_id 0 ; splice_site "aa" KQ414828.1 exonerate:protein2genome:local cds 22304 22433 . + . KQ414828.1 exonerate:protein2genome:local exon 22304 22433 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21898 22433 284 + . alignment_id 6 ; Query gi|350397295|ref|XP_003484831.1| ; Align 21898 68 234 ; Align 22305 147 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397295|ref|XP_003484831.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 258 Query range: 314 -> 410 Target range: 28559 -> 29257 315 : LeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleMetGlnGluSerThrSer : 334 :!! !!||||||! !|||||||||||||||||||||||||||! !|||||| !!:! ValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsn 28560 : GTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAAC : 28617 335 : ValAlaLeuAlaValTyrLysGlyProTrpSerPheLeuProAlaThrGluSerGlyMet : 354 :!!||| !:!!|||||| |||||||||! ! !|||||| ::: ||| IleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLys 28618 : ATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaa : 28677 355 : MetMetArgLysAspLeuIleLeuValThrIleArgSerGlyValProCysCysIleThr : 374 ::::!:|||||||||||| !:!!:!!! !:!:|||:!! !! !|||! !! !:!:||| LeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThr 28678 : ctgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACT : 28737 375 : GlyTyrGlyPhePheValValSerLeuGluThrTyrThrArg >>>> Target Intr : 389 !.!! !||||||||| !:!!||||||||||||!:!|||!:! 410 bp AlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 28738 : GCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt................ : 28784 390 : on 1 >>>> ValLeuSerThrAlaValSerTyrPheThrLeuLeuArgGlnThrThrG : 405 :!!:!!||||||:!!:!!||||||||||||||||||!:!||| !! !: ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnCysIleG 28785 : .........agATCATGAGTACATCAATGTCGTATTTCACATTATTAAAACAATGTATCG : 29240 406 : lnGluThrLeuAsnSer : 410 !!!!:|||:!!|||||| luAspThrValAsnSer 29241 : AGGACACGGTTAATTCG : 29257 vulgar: gi|350397295|ref|XP_003484831.1| 314 410 . KQ414828.1 28559 29257 + 258 M 74 222 5 0 2 I 0 406 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28560 29257 258 + . gene_id 7 ; sequence gi|350397295|ref|XP_003484831.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 28560 28781 . + . KQ414828.1 exonerate:protein2genome:local exon 28560 28781 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 28782 28783 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 28782 29191 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 29190 29191 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 29192 29257 . + . KQ414828.1 exonerate:protein2genome:local exon 29192 29257 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28560 29257 258 + . alignment_id 7 ; Query gi|350397295|ref|XP_003484831.1| ; Align 28560 315 222 ; Align 29192 389 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397295|ref|XP_003484831.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 232 Query range: 181 -> 296 Target range: 37859 -> 38201 182 : LeuLeuGlnLeuMetAlaLeuTyrTyrValGlyValGlyTyrPheCysPheAspAsnLeu : 201 ||| !||| !:!::!!:!!||| ! |||.!!!.! !!|||.!!||||||||| ::: LeuThrGlnAlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIle 37860 : ctCACGCAGGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatt : 37917 202 : LeuCysValMetSerLeuHisLeuAlaThrGlnPheGlnIleLeuGlnTyrLysMetSer : 221 ... :::::: ||||||:!!||| !||||||!::||||||||||||!:!!!::!! PhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAla 37918 : tttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCC : 37977 222 : ArgMetThrAspLeuThrAsnLysGluLysGlyGluThrAsnProGlnLeuPheSerGly : 241 !.!:!!:!!! !|||!:!.!.! !! !|||.!!... !||||||... ! ..!! ! AsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSerThr---AspGlu 37978 : AATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACA---GATGAA : 38034 242 : SerSerAlaAsnLysCysTyrThrAlaPheLysLysTyrIleGlnGlnHisGlnAlaLeu : 261 ! !! !:!!.!.|||||||||! ! !||||||!!.! !||||||||||||||||||||| LeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeu 38035 : TTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTA : 38094 262 : IleAlaTyrCysArgLysLeuGluSerValPheAsnLeuProValLeuValGlnValLeu : 281 |||! !!:!||| !! !||||||..!||||||!..:!! !!.!|||! !||||||||| IleGluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnValLeu 38095 : ATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCTA : 38154 282 : AlaPheSerLeuValMetCysLeuAspGlyTyrGlnIleLeuMet : 296 !||||||:!!:!!!!:|||!!!! !! !|||||| !|||:!! MetPheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeu 38155 : ATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTG : 38201 vulgar: gi|350397295|ref|XP_003484831.1| 181 296 . KQ414828.1 37859 38201 + 232 M 57 171 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37860 38201 232 + . gene_id 8 ; sequence gi|350397295|ref|XP_003484831.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37860 38201 . + . KQ414828.1 exonerate:protein2genome:local exon 37860 38201 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 37860 38201 232 + . alignment_id 8 ; Query gi|350397295|ref|XP_003484831.1| ; Align 37860 182 171 ; Align 38031 240 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397295|ref|XP_003484831.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 308 -> 389 Target range: 38517 -> 38760 309 : PheGlnLeuIleAlaCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysIle : 328 ||| ! !!!:.!! !!:!! !!||||||! !||||||||||||||||||||||||||| PheAlaThrMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIle 38518 : TTCGCAACGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATA : 38575 329 : MetGlnGluSerThrSerValAlaLeuAlaValTyrLysGlyProTrpSerPheLeuPro : 348 ! !|||||| !!:!:!!||| !:!!|||||| |||||||||! ! !|||||| ThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuPro 38576 : ACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCA : 38635 349 : AlaThrGluSerGlyMetMetMetArgLysAspLeuIleLeuValThrIleArgSerGly : 368 ::: ||| ::::!:|||||||||||| !:!!:!!! !:!:|||:!! !! MetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArg 38636 : ATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGA : 38695 369 : ValProCysCysIleThrGlyTyrGlyPhePheValValSerLeuGluThrTyrThrArg : 388 !|||! !! !:!:|||!.!! !||||||||| !:!!||||||||||||!:!|||!:! ArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys 38696 : CGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAG : 38755 389 : Val : 389 ||| Val 38756 : GTA : 38760 vulgar: gi|350397295|ref|XP_003484831.1| 308 389 . KQ414828.1 38517 38760 + 204 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38518 38760 204 + . gene_id 9 ; sequence gi|350397295|ref|XP_003484831.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38518 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38518 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38518 38760 204 + . alignment_id 9 ; Query gi|350397295|ref|XP_003484831.1| ; Align 38518 309 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397295|ref|XP_003484831.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 147 -> 189 Target range: 27339 -> 27465 148 : IleLeuGluAsnIleGlyArgAsnGluSerAspArgGluLeuProPheAsnMetTrpIle : 167 |||||| |||:!!|||!:!||||||||||||||||||! ! !|||:!!||||||.!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPhe 27340 : attttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTC : 27397 168 : AspLeuProLeuThrAlaThrProTyrTyrGluIleThrLeuLeuLeuGlnLeuMetAla : 187 ||||||||||||:!!!.!||||||||||||||||||||| !:!!:!!|||:!!:!: !! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 27398 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 27457 188 : LeuTyr : 189 :!!!:! IlePhe 27458 : ATTTTC : 27465 vulgar: gi|350397295|ref|XP_003484831.1| 147 189 . KQ414828.1 27339 27465 + 148 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27340 27465 148 + . gene_id 10 ; sequence gi|350397295|ref|XP_003484831.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27340 27465 . + . KQ414828.1 exonerate:protein2genome:local exon 27340 27465 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27340 27465 148 + . alignment_id 10 ; Query gi|350397295|ref|XP_003484831.1| ; Align 27340 148 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397295|ref|XP_003484831.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 147 -> 189 Target range: 37450 -> 37576 148 : IleLeuGluAsnIleGlyArgAsnGluSerAspArgGluLeuProPheAsnMetTrpIle : 167 ||| |||:!!|||!:!||||||||||||||||||! ! !!:!:!!||||||:!! IleSerAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 37451 : atttcagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 37508 168 : AspLeuProLeuThrAlaThrProTyrTyrGluIleThrLeuLeuLeuGlnLeuMetAla : 187 ||||||||||||:!! !||||||||||||||||||||| !:!!:!!|||:!!:!: !! AspLeuProLeuSerIleThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 37509 : GATCTACCATTATCCATAACAccatattatgaaattacttACATAATACAGGTATTACCA : 37568 188 : LeuTyr : 189 :!!!:! IlePhe 37569 : ATTTTC : 37576 vulgar: gi|350397295|ref|XP_003484831.1| 147 189 . KQ414828.1 37450 37576 + 140 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37451 37576 140 + . gene_id 11 ; sequence gi|350397295|ref|XP_003484831.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37451 37576 . + . KQ414828.1 exonerate:protein2genome:local exon 37451 37576 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37451 37576 140 + . alignment_id 11 ; Query gi|350397295|ref|XP_003484831.1| ; Align 37451 148 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397295|ref|XP_003484831.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 0 -> 78 Target range: 7890 -> 8124 1 : MetSerPheLeuLysSerHisAspIleSerIleSerLeuThrSerThrPheMetLysLeuIl : 21 |||..! !|||..! ||||||||||||!:!|||:!!!.! !|||:!!::: !:! MetGlnThrGluLysAspSerAspIleSerIleAsnLeuSerLysPhePheLeuArgAsnVa 7891 : ATGCAAACGGAGAAGGATTCGGACATATCGATCAACTTGTCGAAATTCTTCTTGCGCAATGT : 7951 22 : eGlyIleTrpThrSerLysAsnGlnMetGluArgArgValArgLeuIleThrLeuIleTyrA : 42 !|||:!:|||! !:!!:!!|||!!. !|||!.!||| !||| ! !:!! !|||. lGlyLeuTrpArgAlaGluAsnHisAlaGluAsnArgLysArgLysAlaLeuValAlaTyrT 7952 : CGGCCTGTGGAGGGCTGAGAATCACGCGGAGAATCGTAAAAGGAAAGCGTTGGTCGCCTACA : 8014 43 : laPheSerIleIleLeuPheAlaLeuTrpIleGluIleThrAspThrTyrTyrSerPheAsp : 62 !!.!!!!!! !!!:!!!!!.|||:!! !:!!|||! ! !|||! !|||!:!!!!!:: ! hrIleTrpAsnMetPheLeuAlaIleValValGluThrArgAspMetTyrPheThrTrpPhe 8015 : CGATTTGGAACATGTTTTTGGCCATAGTGGTTGAAACGAGAGATATGTATTTCACCTGGTTC : 8074 63 : AspLeuSerThrArgIleTyrAsnValCysAsnIleLeuAlaValLeu : 78 !! !.!!..!!!!:!!! ||||||! ! !!:!:! !! !|||:!! TyrLysGlyValSerValSerAsnValPheTyrValTyrAspValIle 8075 : TATAAAGGCGTGAGTGTATCGAATGTTTTCTATGTGTACGATGTAATT : 8124 vulgar: gi|350397295|ref|XP_003484831.1| 0 78 . KQ414828.1 7890 8124 + 102 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 7891 8124 102 + . gene_id 12 ; sequence gi|350397295|ref|XP_003484831.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 7891 8124 . + . KQ414828.1 exonerate:protein2genome:local exon 7891 8124 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 7891 8124 102 + . alignment_id 12 ; Query gi|350397295|ref|XP_003484831.1| ; Align 7891 1 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928873|ref|XP_012248903.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 635 Query range: 46 -> 333 Target range: 1234581 -> 1233243 47 : ValValAlaSerPheGluLysMetPheAspValIleLysLysAspTrpLysLeuLe : 65 |||:!! |||:::||||||:::|||:!!:!:! !!:!!!:|||:!!! !|| ValIleLeu***PheGlnLysMetTyrAspLeuValThrArgGluTrpGluGlnLe 1234581 : GTCATATTatagtttcaaaaaatgtatgaTCTTGTGACAAGAGAGTGGGAGCAGTT : 1234527 66 : uAsnAspLysSerGlnThrHisIleLeuGluGluIleThrLysGlnGlyAsnLysI : 84 |!.. !!...!:!! !|||:!:||||||!!:||||||! !||||||..!|||: uArgMetAsnAspGluLeuHisValLeuGluAspIleThrMetGlnGlyGlyLysL 1234526 : GAGGATGAACGACGAGTTGCATGTGCTTGAAGACATTACCATGCAAGGTGGTAAAC : 1234470 85 : leGlyGluIleTyrArg{T} >>>> Target Intron 1 >>>> {hr}Phe : 91 !!!.!:!!.!!||||||{!} 126 bp {.!} euAlaGlnPheTyrArg{A}++ ++{sn}Thr 1234469 : TCGCGCAATTCTACAGA{A}gt.........................ag{AT}ACA : 1234323 92 : ValLeuSerCysMetSerGlyPheIleValIleProLeuTyrProAlaPheLeuAs : 110 :!!||||||! !||| !! !|||:!::!!:!!|||||| ! ! !!|||||||| LeuLeuSerPheMetValValPheLeuLeuValProLeuValPheProPheLeuAs 1234322 : TTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGA : 1234266 111 : pIleIleIleProLeuAsnGluThrArgGlnArgHisGlnMetPheArgLeuThrT : 129 |:!!:!!:!!||||||||||||||||||! !|||!!.||| ||||||:!!!.!| pValValLeuProLeuAsnGluThrArgProArgGlnGlnGlyPheArgValAsnT 1234265 : TGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACT : 1234209 130 : yr<->PheLeuAspGluAsnArgTyrPheTyrProIleTyrPheHisSerLeuTrp : 146 || !:!!!!|||||| !||||||!:! !:!:||||||!!.! ! !||| yrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrp 1234208 : ATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGG : 1234155 147 : CysSerPheValThrValMetIleAlaValThrIleAspSerLeuTyrIleGlnIl : 165 !!:!! !!|||..!||||||||| !:!!|||:!!||||||||||||!!: !|| GlyAlaValValValValMetIleIleIleThrValAspSerLeuTyrMetIleIl 1234154 : GGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGATAAT : 1234098 166 : eValHisHisAspCysAlaIlePheAlaIleCys{Gl} >>>> Target Intr : 177 |:!!||||||! ! !!!.!!!:||||||:!:|||{||} 198 bp eIleHisHisAlaSerGlyMetPheAlaValCys{Gl}++ 1234097 : AATTCACCATGCCAGCGGAATGTTCGCCGTGTGC{GG}gt................ : 1234058 178 : on 2 >>>> {y}GlnAsnIleIleThrAlaThrGlySerThrAspValArgIle : 191 {|} ! ...:!! !|||! ! ! !! !||| :!!!:! ! ++{y}TyrArgValCysThrAspGlnIleMetThrIleIleLysTyr 1234057 : .........ag{C}TATCGAGTTTGTACTGATCAAATAATGACAATAATAAAGTAT : 1233822 192 : AsnGluThrTyrThrGluArgPheArgGlnCysLeuThrMetHisLysAsnAlaLe : 210 |||||| !! .!!..! !!!.!:!! ! ! ! ! ! !! !! AsnGlu***LeuAlaArgLeuLeuLysProThrAsnLeuCysPheCysTyrIleSe 1233821 : AATGAATAATTAGCCCGATTATTGAAACCGACTAACTTGTGCTTTTGTTACATTTC : 1233765 211 : uGlnLeuPheGluMetLeuAspAspSerSerArgArgSerPhePhePheGlnIleL : 229 !::!!!!!:!!!:!!:|||:!!!!:|||||||||!.!|||!:!!!..!!|||:!! rArgPheTyrAspIleLeuAsnGluSerSerArgAsnSerTyrLeuIleGlnValG 1233764 : CAGGTTTTACGATATTCTAAACGAGAGCAGTCGAAATAGCTACTTGATTCAGGTTG : 1233708 230 : euLeuThrMetValGlyMetThrIleThrAlaValGln >>>> Target Intr : 242 !|||!.!|||:!!|||!!:!:!:!:|||||||||||| 80 bp lyLeuAsnMetMetGlyIleSerValThrAlaValGln+- 1233707 : GATTGAACATGATGGGCATTAGCGTGACCGCTGTCCAGgc................ : 1233667 243 : on 3 >>>> AlaValIleAsnLeuHisArgProGluGluAlaLeuArgIleGly : 256 .!!|||:!!!..||| !!||||||! !|||||||||||| !!.! ++ThrValLeuThrLeuAspArgProAlaGluAlaLeuArgCysAla 1233666 : .........agACAGTCCTCACACTGGACAGGCCGGCAGAAGCTCTTAGATGTGCT : 1233547 257 : LeuPheLeuValGlyGlnGlnPheHisLeuLeuIleIleThrLeuProGlyGlnVa : 275 :!!|||||||||!.!:!!||||||||||||!!!||||||!:!||||||||||||.. ValPheLeuValAlaGluGlnPheHisLeuPheIleIleSerLeuProGlyGlnTh 1233546 : GTGTTCCTTGTAGCGGAGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGAC : 1233490 276 : lIleThrAspHisSerPheGluLeuThrAsnAsp{Il} >>>> Target Intr : 287 !:!!..!||||||!!! :!!|||:!!!!.|||{||} 70 bp rLeuValAspHisCysThrLysLeuSerLysAsp{Il}++ 1233489 : ACTCGTGGATCATTGTACGAAACTATCGAAGGAT{AT}gt................ : 1233450 288 : on 4 >>>> {e}TyrArgSerMetTrpTyrAsnMetProIleAsnValGlnArg : 301 {|}||| !|||! !||||||!!.:!:||| !!!. !!|||||| ++{e}TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArg 1233449 : .........ag{A}TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGA : 1233342 302 : ValLeuHisMetMetGlnMetArgSerSerLysProCysLysLeuThrAlaGlyGl : 320 |||:!!:!!! !||||||!!:|||:!! !||||||||| |||||||||||||| ValIleTyrThrMetGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGl 1233341 : GTAATTTACACGATGCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGG : 1233285 321 : yIleTyrGlnMetAsnIleGluAsnPheGlyIleValArg : 333 |:!:|||:!!||||||!!:|||||||||!.!! !|||||| yLeuTyrGluMetAsnMetGluAsnPheAlaAsnValArg 1233284 : ATTGTATGAAATGAACATGGAGAACTTTGCAAACGTTCGT : 1233244 vulgar: gi|815928873|ref|XP_012248903.1| 46 333 . KQ414851.1 1234581 1233243 - 635 M 43 129 S 0 1 5 0 2 I 0 122 3 0 2 S 1 2 M 39 117 G 0 3 M 47 141 S 0 2 5 0 2 I 0 194 3 0 2 S 1 1 M 64 192 5 0 2 I 0 76 3 0 2 M 45 135 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233244 1234581 635 - . gene_id 1 ; sequence gi|815928873|ref|XP_012248903.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1234452 1234581 . - . KQ414851.1 exonerate:protein2genome:local exon 1234452 1234581 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234450 1234451 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1234326 1234451 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1234326 1234327 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1234061 1234325 . - . KQ414851.1 exonerate:protein2genome:local exon 1234061 1234325 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234059 1234060 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233863 1234060 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1233863 1233864 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233670 1233862 . - . KQ414851.1 exonerate:protein2genome:local exon 1233670 1233862 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233668 1233669 . - . intron_id 3 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1233590 1233669 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1233590 1233591 . - . intron_id 2 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233453 1233589 . - . KQ414851.1 exonerate:protein2genome:local exon 1233453 1233589 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233451 1233452 . - . intron_id 4 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233383 1233452 . - . intron_id 4 KQ414851.1 exonerate:protein2genome:local splice3 1233383 1233384 . - . intron_id 3 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233244 1233382 . - . KQ414851.1 exonerate:protein2genome:local exon 1233244 1233382 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233244 1234581 635 - . alignment_id 1 ; Query gi|815928873|ref|XP_012248903.1| ; Align 1234582 47 129 ; Align 1234324 91 117 ; Align 1234204 130 141 ; Align 1233862 178 192 ; Align 1233590 242 135 ; Align 1233382 288 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928873|ref|XP_012248903.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 329 Query range: 46 -> 177 Target range: 1245066 -> 1243599 47 : ValValAlaSerPheGluLysMetPheAspValIleLysLysAspTrpLysLeuLe : 65 ..!:!! !..!|||!!:|||:!!!:!|||:!!!!:||||||!!:||| ! :!!|| ThrMetLeuGlnPheAspLysLeuTyrAspIleMetLysLysGluTrpAspMetLe 1245066 : ACTATGTTGCAGTTCGACAAGTTGTACGATATCATGAAGAAAGAATGGGATATGTT : 1245012 66 : uAsnAspLysSerGlnThrHisIleLeuGluGluIleThrLysGlnGlyAsnLysI : 84 |!:! ! ! ..!||| !!.|||||||||||||||||||||!:!|||!:!|||: uSerLeuAspGluGln---GlnIleLeuGluGluIleThrLysArgGlySerLysL 1245011 : AAGTCTCGACGAGCAG---CAGATTCTCGAAGAAATCACTAAACGAGGAAGTAAAT : 1244958 85 : leGlyGluIleTyrArg{T} >>>> Target Intron 1 >>>> {hr}Phe : 91 !! !.!.|||||||||{!} 1077 bp {:!} ! euThrAsnIleTyrArg{S}++ ++{er}Thr 1244957 : TAACCAATATATACAGA{A}gt.........................ag{GT}ACT : 1243860 92 : ValLeuSerCysMetSerGlyPheIleValIleProLeuTyrProAlaPheLeuAs : 110 :!!!!!! !! ! !! ! !|||:!!:!!.!!|||||| !||| !!.!.||||| LeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleLeuAs 1243859 : TTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGA : 1243803 111 : pIleIleIleProLeuAsnGluThrArgGlnArgHisGlnMetPheArgLeuThrT : 129 |:!!:!! !||||||||||||||||||...||| ::::::...:::||| | pValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuGlnT 1243802 : TGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgcaat : 1243746 130 : yrPheLeuAspGluAsnArgTyrPheTyrProIleTyrPheHisSerLeuTrpCys : 147 ||.!.!!!||| ...::: |||||| :::||| !!:!!!!! !|||||| yrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCys 1243745 : accTGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGCTGGTGC : 1243692 148 : SerPheValThrValMetIleAlaValThrIleAspSerLeuTyrIleGlnIleVa : 166 ||||||:!!|||:!!|||:!! !:!!|||||||||:!!||||||:!: !|||:! SerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValValIleIl 1243691 : TCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCAT : 1243635 167 : lHisHisAspCysAlaIlePheAlaIleCysGly : 177 !|||||| |||!.!:!!||||||:!!|||||| eHisHisThrCysGlyLeuPheAlaValCysGly 1243634 : TCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: gi|815928873|ref|XP_012248903.1| 46 177 . KQ414851.1 1245066 1243599 - 329 M 24 72 G 1 0 M 18 54 S 0 1 5 0 2 I 0 1073 3 0 2 S 1 2 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1245066 329 - . gene_id 2 ; sequence gi|815928873|ref|XP_012248903.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1244940 1245066 . - . KQ414851.1 exonerate:protein2genome:local exon 1244940 1245066 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local splice5 1244938 1244939 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243863 1244939 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1243863 1243864 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1243600 1243862 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243862 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1245066 329 - . alignment_id 2 ; Query gi|815928873|ref|XP_012248903.1| ; Align 1245067 47 72 ; Align 1244995 72 54 ; Align 1243861 91 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928873|ref|XP_012248903.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 309 Query range: 241 -> 333 Target range: 1243006 -> 1242658 242 : AlaValIleAsnLeuHisArgProGluGluAlaLeuArgIleGlyLeuPheLeuVa : 260 ||| !!||||||||| !!|||||||||||| ! !||||||!.!! !||||||:! AlaPheIleAsnLeuAspArgProGluGluPheAlaArgIleAlaCysPheLeuIl 1243006 : GCCTTTATAAATCTAGATCGGCCTGAAGAATTTGCCAGAATTGCTTGTTTCCTTAT : 1242952 261 : lGlyGlnGlnPheHisLeuLeuIleIleThrLeuProGlyGlnValIleThrAspH : 279 !!.!||||||.!!|||||||||:!!|||!:!:!!|||||||||:!!|||||||||! eAlaGlnGlnLeuHisLeuLeuValIleSerValProGlyGlnIleIleThrAspG 1242951 : AGCTCAGCAACTCCACTTGTTAGTCATTAGTGTACCAGGGCAGATCATCACGGATC : 1242895 280 : isSerPheGluLeuThrAsnAsp{Il} >>>> Target Intron 1 >>>> : 287 !.|||! :!!||||||! !|||{||} 72 bp lnSerSerLysLeuThrIleAsp{Il}++ ++ 1242894 : AAAGTTCAAAGTTGACCATTGAC{AT}gt.........................ag : 1242799 288 : {e}TyrArgSerMetTrpTyrAsnMetProIleAsnValGlnArgValLeuHisMe : 305 {|}|||!.!||||||||||||.!.! |||:!: :!!|||!:!:!!||||||!! {e}TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIl 1242798 : {A}TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATAT : 1242745 306 : tMetGlnMetArgSerSerLysProCysLysLeuThrAlaGlyGlyIleTyrGlnM : 324 ::!:|||!!:||||||.!!|||||||||||||||..!|||||||||:!!|||:!!| eValGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluM 1242744 : AGTACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAA : 1242688 325 : etAsnIleGluAsnPheGlyIleValArg : 333 |||||||||||||||||||| !|||||| etAsnIleGluAsnPheGlySerValArg 1242687 : TGAACATTGAGAATTTTGGATCAGTACgt : 1242659 vulgar: gi|815928873|ref|XP_012248903.1| 241 333 . KQ414851.1 1243006 1242658 - 309 M 45 135 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242659 1243006 309 - . gene_id 3 ; sequence gi|815928873|ref|XP_012248903.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1242870 1243006 . - . KQ414851.1 exonerate:protein2genome:local exon 1242870 1243006 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242868 1242869 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242798 1242869 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1242798 1242799 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242659 1242797 . - . KQ414851.1 exonerate:protein2genome:local exon 1242659 1242797 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242659 1243006 309 - . alignment_id 3 ; Query gi|815928873|ref|XP_012248903.1| ; Align 1243007 242 135 ; Align 1242797 288 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928873|ref|XP_012248903.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 278 Query range: 240 -> 332 Target range: 1222717 -> 1222370 241 : GlnAlaValIleAsnLeuHisArgProGluGluAlaLeuArgIleGlyLeuPheLe : 259 |||..!:!!!!:|||:!! !!||||||!!:||| !:!!|||:!!!.!:!!|||:! GlnCysIleMetAsnIleAspArgProAspGluLeuIleArgLeuAlaMetPheVa 1222717 : CAGTGCATTATGAACATCGACCGACCTGACGAACTCATCAGGCTTGCGATGTTTGT : 1222663 260 : uValGlyGlnGlnPheHisLeuLeuIleIleThrLeuProGlyGlnValIleThrA : 278 !|||!..|||:::|||||||||||||||:!!!:!||||||||||||:!!:!: !| lValAlaGlnLysPheHisLeuLeuIleLeuSerLeuProGlyGlnMetLeuLeuA 1222662 : CGTAGctcagaaatttcatttgctcATCCTTAGTTTACCTGGGCAAATGTTGTTAG : 1222606 279 : spHisSerPheGluLeuThrAsnAsp{Il} >>>> Target Intron 1 >>> : 287 ||||||||!!.! !|||.!!:!! {||} 71 bp spHisSerLeuGlyLeuAlaAspIle{Il}++ 1222605 : ATCATAGTTTAGGATTGGCCGATATA{AT}gt........................ : 1222575 288 : > {e}TyrArgSerMetTrpTyrAsnMetProIleAsnValGlnArgValLeuHi : 304 {|}||| !|||! ||||||.!.:!:|||:!!!!.! !|||!:!:!!:!!:! ++{e}TyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTy 1222574 : .ag{T}TACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTA : 1222457 305 : sMetMetGlnMetArgSerSerLysProCysLysLeuThrAlaGlyGlyIleTyrG : 323 !! !|||||||||||||||! !::!||||||! !|||||||||||||||:!::!!: rThrMetGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisG 1222456 : CACGATGCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATG : 1222400 324 : lnMetAsnIleGluAsnPheGlyIleVal : 332 !!||||||||||||!:!|||||||||||| luMetAsnIleGluSerPheGlyIleVal 1222399 : AGATGAACATCGAGAGTTTCGGAATAGTA : 1222371 vulgar: gi|815928873|ref|XP_012248903.1| 240 332 . KQ414851.1 1222717 1222370 - 278 M 46 138 S 0 2 5 0 2 I 0 67 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222371 1222717 278 - . gene_id 4 ; sequence gi|815928873|ref|XP_012248903.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1222578 1222717 . - . KQ414851.1 exonerate:protein2genome:local exon 1222578 1222717 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1222576 1222577 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222507 1222577 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1222507 1222508 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222371 1222506 . - . KQ414851.1 exonerate:protein2genome:local exon 1222371 1222506 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222371 1222717 278 - . alignment_id 4 ; Query gi|815928873|ref|XP_012248903.1| ; Align 1222718 241 138 ; Align 1222506 288 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928873|ref|XP_012248903.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 214 Query range: 91 -> 177 Target range: 1229485 -> 1229224 92 : ValLeuSerCysMetSerGlyPheIleValIleProLeuTyrProAlaPheLeuAs : 110 :!!|||! !...|||!!!! !|||:!::!!:!!||||||!:! ! !! !||||| LeuLeuPheAlaMetCysValPheLeuLeuValProLeuPheGlyProAlaLeuAs 1229485 : TTACTCTTCGCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGA : 1229431 111 : pIleIleIleProLeuAsnGluThrArgGlnArgHisGlnMetPheArgLeuThrT : 129 ||||:!!:!!|||! !||||||||||||! !|||!!.|||:!!||||||:!!!.!| pIleValLeuProSerAsnGluThrArgProArgGlnGlnLeuPheArgValAsnT 1229430 : CATCGTCCTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACT : 1229374 130 : yrPheLeu<->AspGluAsnArgTyrPheTyrProIleTyrPheHisSerLeuTrp : 146 ||.!.:!! |||:!! !||||||!:! !:!:|||.!!!!.! !!!!||| yrIleIlePheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPheTrp 1229373 : ATATAATTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTTTGG : 1229320 147 : CysSerPheValThrValMetIleAlaValThrIleAspSerLeuTyrIleGlnIl : 165 |||!!!.!!||| !|||||| ! !:!!|||:!!||||||||||||!!: || CysThrIleValLeuValMetAlaIleIleThrValAspSerLeuTyrMetIleIl 1229319 : TGTACAATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGATCAT : 1229263 166 : eValHisHisAspCysAlaIlePheAlaIleCysGly : 177 |:!!:!!|||! ! !!!.!!!:||||||||||||||| eIleTyrHisAlaSerGlyMetPheAlaIleCysGly 1229262 : AATTTACCATGCCAGCGGAATGTTCGCTATATGCGGG : 1229225 vulgar: gi|815928873|ref|XP_012248903.1| 91 177 . KQ414851.1 1229485 1229224 - 214 M 40 120 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229485 214 - . gene_id 5 ; sequence gi|815928873|ref|XP_012248903.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229225 1229485 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229485 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229485 214 - . alignment_id 5 ; Query gi|815928873|ref|XP_012248903.1| ; Align 1229486 92 120 ; Align 1229363 132 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928873|ref|XP_012248903.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 171 Query range: 50 -> 177 Target range: 1240295 -> 1239821 51 : PheGluLysMetPheAspValIleLysLysAspTrpLysLeuLeuAsnAspLysSe : 69 |||:::...::: !:!: !:!! ! |||:!! !|||!.. !!..!: PheLysAsnLeuCysIleSerValValGluLysTrpGluGluLeuArgIleSerAs 1240295 : tttaaaaatttatgcattTCTGTGGTGGAAAAATGGGAAGAGTTGAGGATCAGTAA : 1240241 70 : rGlnThrHisIleLeuGluGluIleThrLysGlnGlyAsnLysIleGlyGluIleT : 88 !:!! ! !:!:|||||||||:!!||| ||||||!::|||... ::::::| nGluLeuSerValLeuGluGluValThrAlaGlnGlySerLysPheValGlnLeuT 1240240 : CGAGTTAAGCGTGCTGGAAGAAGTTACCGCCCAAGGGAGcaaatttgtacaattgt : 1240184 89 : yrArgThrPheValLeuSerCysMetSerGlyPheIleVal >>>> Target I : 102 |||||!:! :::||| ::: 90 yrArgSerGluTyrArgLeuPheLeuSerLeuArgLeuAsn-+ 1240183 : aCAGAAGCGAGTAtcgtttgtttctttcattaagactgaattt............. : 1240140 103 : ntron 1 >>>> IleProLeuTyrProAlaPheLeuAspIleIleIleProLeu : 115 bp :!!|||::::::||| ...|||||||||:!!! !|||||| -+ValProIlePheProProLeuLeuAspIleLeuLysProLeu 1240139 : ............tgGTTCcgatttttcctcctcttctggACATTTTAAAACCTTTA : 1240013 116 : AsnGluThrArgGlnArgHisGlnMetPheArgLeuThrTyr<->PheLeuAspGl : 133 |||||||||||| !|||...::::::|||::::::..!||| .!!:!!|||.. AsnGluThrArgAlaArgGlnLysIlePheLysValAsnTyrLeuIleIleAspAr 1240012 : AACGAAACCCGAGCACgccagaaaatattcaaagttaaTTACCTGATCATTGACAG : 1239956 134 : uAsnArgTyrPheTyrProIleTyrPheHisSerLeuTrpCysSerPheValThrV : 152 !:!!..! ! ! !! !|||||||||! !! !||| !!!.!!..! !! gAspGluGlnAlaLeuIleThrTyrPheHisLeuSerTrpThrThrIleThrLeuG 1239955 : GGATGAACAAGCTCTGATCACATATTTTCACTTGTCTTGGACAACTATCACTCTTG : 1239899 153 : alMetIleAlaValThrIleAspSerLeuTyrIleGlnIleValHisHisAspCys : 170 !!!: !!.!:!!!:! !!!:! !:!!|||:!!! :!!:!!|||||| ! !! lyIleSerValLeuSerSerGluLeuIleTyrValLeuLeuIleHisHisThrSer 1239898 : GGATATCTGTGCTTAGCTCAGAATTGATATACGTCCTTCTTATTCATCATACCAGC : 1239845 171 : AlaIlePheAlaIleCysGly : 177 !.!:!:||||||:!:..!||| GlyLeuPheAlaValAlaGly 1239844 : GGTCTGTTTGCTGTGGCTGgg : 1239822 vulgar: gi|815928873|ref|XP_012248903.1| 50 177 . KQ414851.1 1240295 1239821 - 171 M 51 153 5 0 2 I 0 86 3 0 2 M 28 84 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240295 171 - . gene_id 6 ; sequence gi|815928873|ref|XP_012248903.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1240143 1240295 . - . KQ414851.1 exonerate:protein2genome:local exon 1240143 1240295 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1240141 1240142 . - . intron_id 1 ; splice_site "tt" KQ414851.1 exonerate:protein2genome:local intron 1240053 1240142 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1240053 1240054 . - . intron_id 0 ; splice_site "TG" KQ414851.1 exonerate:protein2genome:local cds 1239822 1240052 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240052 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240295 171 - . alignment_id 6 ; Query gi|815928873|ref|XP_012248903.1| ; Align 1240296 51 153 ; Align 1240053 102 84 ; Align 1239966 130 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928873|ref|XP_012248903.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 168 Query range: 98 -> 211 Target range: 1224264 -> 1223803 99 : PheIleValIleProLeuTyrProAlaPheLeuAspIleIleIleProLeuAsnGl : 117 !:!!!: !.!!|||||| ! !! !!||||||:!!:!! ||||||||||| TyrMetSerPheProLeuIleAsnProValLeuAspValValAlaProLeuAsnGl 1224264 : TATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGA : 1224210 118 : uThrArgGlnArgHisGlnMetPheArgLeuThrTyr<->PheLeuAspGluAsnA : 135 |||||||! |||...! :!!.!!! !:!!!:!||| |||:!!|||||| !!. uThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleAspGluTyrG 1224209 : GACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACG : 1224153 136 : rgTyrPheTyrProIleTyrPheHisSerLeuTrpCysSerPheValThrValMet : 153 .!:!!|||||| !:!: !!|||||| !! ! !! !.!! ! !! !||| luHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSerCysGlyMet 1224152 : AGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATG : 1224099 154 : IleAlaValThrIleAspSerLeuTyrIleGlnIleValHisHisAspCysAlaIl : 172 !!: !:!!.!!:!:|||! !||||||||| |||:!! !||| !|||!.!:! MetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCysGlyLe 1224098 : ATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTGCGGATT : 1224042 173 : ePheAlaIleCys{Gl} >>>> Target Intron 1 >>>> {y}GlnAsnI : 180 :||||||:!:|||{||} 119 bp {|} !!.. uPheAlaValCys{Gl}++ --{y}ThrThrG 1224041 : GTTCGCAGTGTGT{GG}gt.........................gt{A}ACAACAG : 1223899 181 : leIleThrAlaThrGlySerThrAspValArgIleAsnGluThrTyrThrGluArg : 198 !!:!.! !..!..!!.! !!!:..!!:!! !!:!|||.!! ! !:!!!:! luMetAsnIleValAsnLysAspGluThrLysLysSerGluAlaGlyTyrLysGln 1223898 : AGATGAACATCGTGAACAAAGACGAAACCAAGAAAAGCGAGGCTGGTTACAAACAG : 1223845 199 : PheArgGlnCysLeuThrMetHisLysAsnAlaLeuGln : 211 |||!:!||||||:!!||||||||| ! .!.||||||||| PheLysGlnCysValThrMetHisHisGluAlaLeuGln 1223844 : TTCAAACAATGTGTGACAATGCATCACGAAGCCCTTCAG : 1223804 vulgar: gi|815928873|ref|XP_012248903.1| 98 211 . KQ414851.1 1224264 1223803 - 168 M 31 93 G 0 3 M 47 141 S 0 2 5 0 2 I 0 115 3 0 2 S 1 1 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1223804 1224264 168 - . gene_id 7 ; sequence gi|815928873|ref|XP_012248903.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1224026 1224264 . - . KQ414851.1 exonerate:protein2genome:local exon 1224026 1224264 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1224024 1224025 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1223907 1224025 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1223907 1223908 . - . intron_id 0 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local cds 1223804 1223906 . - . KQ414851.1 exonerate:protein2genome:local exon 1223804 1223906 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1223804 1224264 168 - . alignment_id 7 ; Query gi|815928873|ref|XP_012248903.1| ; Align 1224265 99 93 ; Align 1224169 130 141 ; Align 1223906 178 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928873|ref|XP_012248903.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 152 Query range: 287 -> 333 Target range: 1228545 -> 1228407 288 : TyrArgSerMetTrpTyrAsnMetProIleAsnValGlnArgValLeuHisMetMe : 306 ||| !|||! !||||||!!.:!: !! !!!. !!|||||||||:!!:!!||||| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 307 : tGlnMetArgSerSerLysProCysLysLeuThrAlaGlyGlyIleTyrGlnMetA : 325 ||||!!:|||:!! !|||||||||! |||||||||||||||:!:|||:!!|||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 326 : snIleGluAsnPheGlyIleValArg : 333 ||!!:|||||||||!.!! !|||||| snMetGluAsnPheAlaAsnValArg 1228433 : ACATGGAGAACTTTGCAAACGTTCGT : 1228408 vulgar: gi|815928873|ref|XP_012248903.1| 287 333 . KQ414851.1 1228545 1228407 - 152 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228408 1228545 152 - . gene_id 8 ; sequence gi|815928873|ref|XP_012248903.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228408 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228408 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228408 1228545 152 - . alignment_id 8 ; Query gi|815928873|ref|XP_012248903.1| ; Align 1228546 288 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928873|ref|XP_012248903.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 238 -> 288 Target range: 1228764 -> 1228614 239 : AlaValGlnAlaValIleAsnLeuHisArgProGluGluAlaLeuArgIleGlyLe : 257 :!! !!||| !:!!:!! !||| !!||||||...||||||:!!||| !..!:! SerPheGlnIleMetLeuAlaLeuAspArgProSerGluAlaIleArgTyrSerVa 1228764 : TCTTTCCAGATAATGCTCGCCCTGGATAGACCGAGCGAAGCTATTAGATATTCTGT : 1228710 258 : uPheLeuValGlyGlnGlnPheHisLeuLeuIleIleThrLeuProGlyGlnValI : 276 ! !!|||! !||| !||||||||||||!!!||||||!:!||||||||||||..!: lValLeuGlyGlyAlaGlnPheHisLeuPheIleIleSerLeuProGlyGlnThrL 1228709 : GGTTCTTGGAGGTGCGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACAC : 1228653 277 : leThrAspHisSerPheGluLeuThrAsnAspIleTyr : 288 !!..!||||||!!! ! !||||||||||||!!:||| euValAspHisCysThrMetLeuThrAsnAspMetTyr 1228652 : TCGTGGATCATTGTACCATGCTAACGAACGATATGTAC : 1228615 vulgar: gi|815928873|ref|XP_012248903.1| 238 288 . KQ414851.1 1228764 1228614 - 135 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228615 1228764 135 - . gene_id 9 ; sequence gi|815928873|ref|XP_012248903.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228615 1228764 . - . KQ414851.1 exonerate:protein2genome:local exon 1228615 1228764 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228615 1228764 135 - . alignment_id 9 ; Query gi|815928873|ref|XP_012248903.1| ; Align 1228765 239 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928873|ref|XP_012248903.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 235 -> 287 Target range: 1238840 -> 1238684 236 : ThrIleThrAlaValGlnAlaValIleAsnLeuHisArgProGluGluAlaLeuAr : 254 ||| ! !!.! !!|||.!!||| |||:!! !! !||| !! !|||||||| ThrSerPheValPheGlnThrValGlyAsnIleAspAspProThrValAlaLeuAr 1238840 : ACTTCATTTGTTTTCCAGACAGTGGGGAATATAGACGATCCGACAGTAGCTTTGAG : 1238786 255 : gIleGlyLeuPheLeuValGlyGlnGlnPheHisLeuLeuIleIleThrLeuProG : 273 |! !!.! ! !!! !! !!.!:!!|||.!!||||||!!!||||||!:!:!!|||| gAsnAlaThrValTrpGlyAlaLysGlnIleHisLeuPheIleIleSerIleProG 1238785 : AAACGCTACGGTCTGGGGGGCTAAGCAAATTCACCTGTTCATCATCAGTATACCTG : 1238729 274 : lyGlnValIleThrAspHisSerPheGluLeuThrAsnAspIle : 287 ||||||||:!!! !||||||!!! ! ||||||:!!||||||!!: lyGlnValLeuIleAspHisCysValGluLeuSerAsnAspMet 1238728 : GACAGGTGCTTATAGATCATTGTGTGGAGCTGTCAAACGACATG : 1238685 vulgar: gi|815928873|ref|XP_012248903.1| 235 287 . KQ414851.1 1238840 1238684 - 104 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1238685 1238840 104 - . gene_id 10 ; sequence gi|815928873|ref|XP_012248903.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1238685 1238840 . - . KQ414851.1 exonerate:protein2genome:local exon 1238685 1238840 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1238685 1238840 104 - . alignment_id 10 ; Query gi|815928873|ref|XP_012248903.1| ; Align 1238841 236 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350405014|ref|XP_003487292.1| PREDICTED: odorant receptor 49b-like [Bombus impatiens] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 690 Query range: 0 -> 234 Target range: 5294 -> 4042 1 : MetPheArgAsnAlaThrProGluThrAlaIleAlaPheThrGluPheIleLeuGlyLeuSe : 21 |||!!.!:! !! !!!:!||||||! !||||||:!!.!!..!.!. !!||| !!.!!!!!! MetLeuLysTyrProSerProGluArgAlaIleSerLeuValHisValIleThrAlaPheTh 5294 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCACGTTATCACGGCTTTTAC : 5234 22 : rCysCysTrpProLeuProSerThrAlaThrLysSerGlnIleLeuCysPheLysIleLeuA : 42 !||||||||||||||||||||||||||||||||||||! !:!:||| ||||||||||||| rCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuA 5233 : CTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGA : 5171 43 : rgSerValLeuPheLeuAsnSerLeuLeuLeuPheCysProLeuLeuTyrAlaIleTyrVal : 62 ||||| !!|||.!!||||||:!!|||:!!|||||| |||||||||||||||:!::!!||| rgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHisVal 5170 : GATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTG : 5111 63 : HisArgGluAspThrAlaMetPheCysLysSerValSerLeuThrLeuAlaValValHisVa : 83 ||||||.!.|||.!!! !! !!...|||:!!!.!!!!||||||||||||:::|||...:: HisArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGlnIl 5110 : CATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCctcgtgcaaat : 5048 84 : lProLeuHisSerThrTyrCysPheSerGlnHisAspArgTyrGln >>>> Target In : 99 : ......::! ! !|||.!!.!!|||:!!|||!.!!:!||| 550 ePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGln++ 5047 : atttttccagacTTTCGTTTGCATCGGCCAATACGATCATTTTCAGgt.............. : 4998 100 : tron 1 >>>> ArgLeuIleGluGluMetLysSerCysCysGluLysGlyAsnSerTyrG : 115 bp !:!||||||||||||||||||! !|||||||||! !!.!!!. !!|||| ++LysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrG 4997 : ...........agAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACG : 4402 116 : luArgGlnIlePheGlnArgTyrValAspLysTyrAlaIleTyrTyrAlaAlaSerAlaVal : 135 |||||.!.:!!|||||||||||||||:!!|||:!::::::::::||| ... !!:!! ! luArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSer 4401 : AAAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCA : 4342 136 : TrpPheTyrTrpSerProSerIleIleLeuIleGlyThrPhePheIleSerAspProPhePr : 156 |||||||||! !!! !!! !|||!!::!!:!!|||!:!.!..!!||||||||||||||||| TrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPhePr 4341 : TGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCC : 4279 157 : oThrAsnAlaGluTyrProPheProValAspPheGluProValArgSerIleIlePheLeuG : 177 ||||||||||! !|||||||||||||||:!!|||||||||:!!|||||||||||||||:!!! oThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetH 4278 : AACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGC : 4216 178 : lnGlnSerLeuValGlyMetGlnCysAlaSerLeuLeuCysThrAsnIleLeuCysAlaLeu : 197 !.||||||!!!||||||!!:|||||||||:!!! ! ! !!! !|||:!:|||! !|||||| isGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeu 4215 : ACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTG : 4156 198 : LeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuMetThrGluIleCysAlaValAsnGl : 218 ||||||||||||.!!.!!|||||||||||||||||||||||||||:!: ! !||||||! LeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAs 4155 : TTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGA : 4093 219 : yValLysSerLeuIleLysCysValLysLysTyrTyrThrLeuLysArg : 234 !:!!:!!!!!||||||||| !!:!!|||||||||! |||:!!::!||| pIleGluThrLeuIleLysSerMetLysLysTyrSerThrValArgArg 4092 : TATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: gi|350405014|ref|XP_003487292.1| 0 234 . LHQN01020543.1 5294 4042 - 690 M 98 294 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 5294 690 - . gene_id 1 ; sequence gi|350405014|ref|XP_003487292.1| ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 5001 5294 . - . LHQN01020543.1 exonerate:protein2genome:local exon 5001 5294 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 4999 5000 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 4451 5000 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 4451 4452 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 4043 4450 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4450 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 5294 690 - . alignment_id 1 ; Query gi|350405014|ref|XP_003487292.1| ; Align 5295 1 294 ; Align 4451 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350405014|ref|XP_003487292.1| PREDICTED: odorant receptor 49b-like [Bombus impatiens] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 320 Query range: 267 -> 373 Target range: 1895 -> 1419 268 : ArgGlnProPheThrValLysLeuGlnPheValThrValSerIleThrValLeuLeuAlaVa : 288 !:!|||||||||.!!|||||| !||||||:!!||||||||| !|||!.!||||||! !|| LysGlnProPheAlaValLysAlaGlnPheLeuThrValSerGlyThrAlaLeuLeuGluVa 1895 : AAACAACCGTTCGCTGTGAAAGCTCAGTTTCTTACTGTGAGTGGAACCGCTTTGCTGGAAGT : 1835 289 : lPheMetCysAlaTrpProAlaAspAsnLeuIleAspVal >>>> Target Intron 1 : 302 |.!!||||||:!! |||||||||:!!|||||||||:!! 82 bp lLeuMetCysSerLeuProAlaAspHisLeuIleAspMet++ 1834 : GCTTATGTGTTCACTACCAGCTGACCATTTGATAGATATGgt.................... : 1791 303 : >>>> SerGluSerThrMetArgThrValTyrGlnSerLysTrpTyrGluGlnProLeuA : 320 ||||||!:!! !|||!:! !:!!|||:!!|||||||||||||||!:! |||: ++SerGluAsnIleMetGlnGlyIleTyrGluSerLysTrpTyrGluArgSerLeuL 1790 : .....agAGCGAGAACATAATGCAAGGAATATATGAATCAAAATGGTACGAACGAtctctaa : 1657 321 : rgIleGlnLysPheIleLeuPheMetMetIleProGlnSerProValIleLeuArgIleArg : 340 ::||||||||| !! !:!!.!!|||:!!! !|||||||||||||||! !:!!!:!|||!:! ysIleGlnLysSerThrValLeuMetLeuThrProGlnSerProValThrValLysIleLys 1656 : aaattcaaaagtcTACAGTCCTCATGTTGACTCCTCAATCTCCGGTGACAGTAAAAATCAAG : 1597 341 : CysIleIleProAlaPheSerLeuSerTyrTyrCysSer >>>> Target Intron 2 : 354 |||:!!||||||!.....||||||::::::||||||||| 76 bp CysLeuIleProValLeuSerLeuAsnPheTyrCysSer++ 1596 : TGCCTCATTCCAGttctttctttgaatttttactgCTCGgt..................... : 1553 355 : >>>> PheIleThrAsnValLeuSerMetPheThrAlaLeuArgValValMetPheGlnAs : 372 !:!:!!:!!||||||!!!|||:!:|||||||||||||||:!!!.!|||.!..!.|| ++TyrValSerAsnValPheSerLeuPheThrAlaLeuArgIleAlaMetIleAsnAs 1552 : ....agTACGTCTCAAATGTGTTCTCTTTATTTACCGCTTTAAGAATAGCCATGATAAATGa : 1425 373 : pGlu : 373 |||| pGlu 1424 : tgaa : 1420 vulgar: gi|350405014|ref|XP_003487292.1| 267 373 . LHQN01020543.1 1895 1419 - 320 M 34 102 5 0 2 I 0 78 3 0 2 M 52 156 5 0 2 I 0 72 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 1420 1895 320 - . gene_id 2 ; sequence gi|350405014|ref|XP_003487292.1| ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 1794 1895 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1794 1895 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 1792 1793 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 1712 1793 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 1712 1713 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 1556 1711 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1556 1711 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 1554 1555 . - . intron_id 2 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 1480 1555 . - . intron_id 2 LHQN01020543.1 exonerate:protein2genome:local splice3 1480 1481 . - . intron_id 1 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 1420 1479 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1420 1479 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 1420 1895 320 - . alignment_id 2 ; Query gi|350405014|ref|XP_003487292.1| ; Align 1896 268 102 ; Align 1712 302 156 ; Align 1480 354 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350405970|ref|XP_003487614.1| PREDICTED: odorant receptor 24a-like [Bombus impatiens] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 274 Query range: 94 -> 234 Target range: 4462 -> 4042 95 : AspSerLeuGlnArgThrValArgGluMetMetThrTyrValLysGluThrGlnGlnTyrGl : 115 |||!!!||||||!:! !:!!..!||||||! !! !! ! !:!! !.!!:!!! !||||| AspThrLeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGl 4462 : GACACGTTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGA : 4402 116 : uLysGluIlePheTyrLysTyrIleThrArgCysAspMetLeuCysIleCysThrIleValC : 136 |!:!!!::!!||| ! ::!|||:!!!.!!:! ...:::... ||| ! !! uArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerT 4401 : AAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCAT : 4339 137 : ysMetTyrAlaThrAlaThrGlyPheSerLeuGlyProAlaIleLeuProIleSerPhePro : 156 ! .!.||| !||||||! ! !.!. !|||||| ! !:!!:!! !! ! !!|||||| rpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPhePro 4338 : GGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCA : 4279 157 : AlaAspAlaGluTyrProPheArgValAsnTyrThrProMetAsnIleIleIleTyrAlaHi : 177 .!!:!!|||! !|||||||||! !||||||!:! !|||:!!!..! !||||||!:! !|| ThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHi 4278 : ACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCA : 4216 178 : sGlnSerIleLeuSerTyrGlnCysAlaAlaHisSerCysValSerIlePheGlyAlaLeuL : 198 |||||||.!!:!!.!! |||||||||||||||:!! !!:!!!:!:!:.!!..!||||||| sGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeuL 4215 : CCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTGT : 4153 199 : euLeuTrpPheThrAlaAlaArgPheGluCysLeuThrValGluLeuGluLysSerThrSer : 218 ||||| ||||||.!!|||||||||||| ||| !..!||||||..!!!. !!.!..! euLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAsp 4152 : TATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGAT : 4093 219 : IleAsnThrLeuIleValCysIleLysLysGlnLeuSerLeuArgArg : 234 |||.!.||||||||| ! !!!!:|||||| ! ! !!!!:!!|||||| IleGluThrLeuIleLysSerMetLysLysTyrSerThrValArgArg 4092 : ATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: gi|350405970|ref|XP_003487614.1| 94 234 . LHQN01020543.1 4462 4042 - 274 M 140 420 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 4462 274 - . gene_id 1 ; sequence gi|350405970|ref|XP_003487614.1| ; gene_orientation . LHQN01020543.1 exonerate:protein2genome:local cds 4043 4462 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4462 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 4462 274 - . alignment_id 1 ; Query gi|350405970|ref|XP_003487614.1| ; Align 4463 95 420 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350405070|ref|XP_003487314.1| PREDICTED: odorant receptor 85b-like [Bombus impatiens] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 405 Query range: 0 -> 234 Target range: 5294 -> 4042 1 : MetThrLysGlnIleThrProGluLysValIleHisIleThrTrpLeuSerValValIleTh : 21 ||| !||| ! !:!||||||!:!!.!||| !:!!..! :!!! !..!!.!.!!|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValHisValIleThrAlaPheTh 5294 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCACGTTATCACGGCTTTTAC : 5234 22 : rLeuCysTrpProLeuProIleAsnSerAspArgAsnLysIlePheCysPheLysIleLeuG : 42 |! !||||||||||||||| !..:!! !!:!::! !:!:.!! ||||||||||||: rCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuA 5233 : CTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGA : 5171 43 : lnIleCysSerIleIleSerAlaCysLeuLeuPheLeuProMetLeuTyrPheCysTyrVal : 62 :! !! ! !:!!:!!!:!|||! :!!||||||||||||:!!|||||| ! :!!||| rgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHisVal 5170 : GATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTG : 5111 63 : HisPheAspAspLeuIleAlaThrSerSerCysValCysLeuThrIleGlyValSerGlnAs : 83 ||| :!!||| ! !..!:!!!.!..!!.!|||||||||:!!!.!::: ||| HisArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGlnIl 5110 : CATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCctcgtgcaaat : 5048 84 : nIlePheGlnThrIleValCysCysValLysHisValSerLeuGln >>>> Target In : 99 ...|||||||||.!!|||||| !! !:!!:!!! ! !!!!||| 550 ePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGln++ 5047 : atttttccagacTTTCGTTTGCATCGGCCAATACGATCATTTTCAGgt.............. : 4998 100 : tron 1 >>>> ArgIleValGluGluMetIleValCysIleLysGluAlaGluGlnTyrG : 115 bp !:!:!!:!!|||||||||! :!!||| !:!! !|||:!!! !|||| ++LysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrG 4997 : ...........agAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACG : 4402 116 : luArgGluIlePheTyrLysTyrIleLysLysCysTyrValPheCysGlyCysSerIleAla : 135 |||||!!::!!||| ! ::!|||:!!!!.||| :::||| !! :!! luArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSer 4401 : AAAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCA : 4342 136 : CysThrTyrValThrAlaValGlyPheSerLeuArgProAlaIleLeuProValProPhePr : 156 !! !|||:!!||||||:!! !.!. !||| !! ! !:!!:!! !!! !|||||||| TrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPhePr 4341 : TGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCC : 4279 157 : oPheAspValGluTyrProPheProValAsnTyrThrSerValTyrIleIleIleTyrMetG : 177 | !:!!!.!! !||||||||||||||||||!:! ! !!:!! ! !||||||!:!|||! oThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetH 4278 : AACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGC : 4216 178 : lnHisValCysValCysPheGlnSerAlaAlaGlnIleCysIleSerSerPheGlyGlyLeu : 197 !.!!. !! !||| !!.!.|||!!!||||||!!. ! !!!!:!:! !.!!..!!.!||| isGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeu 4215 : ACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTG : 4156 198 : LeuLeuTrpPheThrAlaAlaArgPheGluCysLeuAlaValAsnLeuGluArgSerThrAs : 218 |||||| ||||||.!!|||||||||||| ||| !..!.!.|||..!!.! !!.!|| LeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAs 4155 : TTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGA : 4093 219 : pThrAspThrLeuIleAspCysValLysLysGlnLeuHisLeuArgArg : 234 |! !!!:||||||||| ! !!:!!|||||| ! ! ! !:!!|||||| pIleGluThrLeuIleLysSerMetLysLysTyrSerThrValArgArg 4092 : TATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: gi|350405070|ref|XP_003487314.1| 0 234 . LHQN01020543.1 5294 4042 - 405 M 98 294 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 5294 405 - . gene_id 1 ; sequence gi|350405070|ref|XP_003487314.1| ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 5001 5294 . - . LHQN01020543.1 exonerate:protein2genome:local exon 5001 5294 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 4999 5000 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 4451 5000 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 4451 4452 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 4043 4450 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4450 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 5294 405 - . alignment_id 1 ; Query gi|350405070|ref|XP_003487314.1| ; Align 5295 1 294 ; Align 4451 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350405074|ref|XP_003487316.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 243 Query range: 94 -> 234 Target range: 4462 -> 4042 95 : AspSerLeuGlnArgThrValGluGluMetMetThrTyrValLysGluAlaGlnGlnTyrGl : 115 |||!!!||||||!:! !:!!|||||||||! !! !! ! !:!! !|||:!!! !||||| AspThrLeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGl 4462 : GACACGTTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGA : 4402 116 : uLysLysIlePheTyrLysTyrIleLysLysCysTyrValPheCysGlyGlySerMetAlaC : 136 |!:! ! :!!||| ! ::!|||:!!!!.||| :::||| !! !:!!! uArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerT 4401 : AAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCAT : 4339 137 : ysThrTyrValThrAlaThrCysPheSerLeuArgProIleIleLeuProValSerLeuPro : 156 ! !|||:!!||||||! ! !.!. !||| !! !:!::!!:!! !!! ! !!!!!||| rpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPhePro 4338 : GGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCA : 4279 157 : PheAspAlaGluTyrProPheProIleAsnTyrThrSerMetTyrIleIleIleTyrMetHi : 177 !:!!|||! !||||||||||||:!!|||!:! ! !!:!! ! !||||||!:!||||| ThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHi 4278 : ACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCA : 4216 178 : sHisAlaCysLeuCysIleGlnThrAlaAlaHisValCysValSerSerPheGlyAlaLeuL : 198 |!!.:!!! !:!! !!|||||| !|||||||||!.! !!:!!!:! !.!!..!||||||| sGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeuL 4215 : CCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTGT : 4153 199 : euLeuTrpPheThrValAlaArgPheGluCysLeuAlaAlaGluLeuGluArgSerThrAsp : 218 ||||| ||||||..!|||||||||||| ||| !.!!||||||..!!.! !!.!||| euLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAsp 4152 : TATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGAT : 4093 219 : PheAspAlaLeuValValCysValLysLysGlnLeuHisLeuLysArg : 234 .!!!!:.!!|||:!! ! !!:!!|||||| ! ! ! !:!!::!||| IleGluThrLeuIleLysSerMetLysLysTyrSerThrValArgArg 4092 : ATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: gi|350405074|ref|XP_003487316.1| 94 234 . LHQN01020543.1 4462 4042 - 243 M 140 420 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 4462 243 - . gene_id 1 ; sequence gi|350405074|ref|XP_003487316.1| ; gene_orientation . LHQN01020543.1 exonerate:protein2genome:local cds 4043 4462 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4462 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 4462 243 - . alignment_id 1 ; Query gi|350405074|ref|XP_003487316.1| ; Align 4463 95 420 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1253 Query range: 1 -> 405 Target range: 256607 -> 258738 2 : AsnGluSerThrIleIleLysThrAspAlaLysSerHisSerAspTyrSerLeuGlnL : 21 ||||||! !.!!:!::!!||||||:!! !||||||:!!||||||||||||||||||| AsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerLeuGlnL 256608 : AACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTCTCCAGT : 256665 22 : euAsnArgTrpPheLeuLysProIleGlyAlaTrpProTyrPheSerThrThrSerTh : 40 |||||||||||||||||||||||||||||||||||||| !! |||:!!|||!!!|| euAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerThrThrTh 256666 : TGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCACTACAAC : 256722 41 : rLeuGluLysValIleSerValSerLeuIleIleLeuCysTyrValValIleLeuPhe : 59 |||||||::! !:!!|||:!! !|||! !|||:!!||||||! ! !||||||||| rLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIleLeuPhe 256723 : CCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTC : 256779 60 : SerIleIleProCysValAlaHisLeuIlePheGluAspAspSerPheTyrArgLysV : 79 !!!:!:|||||||||:!! !|||:!!.!!.!!!!:||||||||||||||| |||| ThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrMetLysV 256780 : ACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAcatgaaag : 256839 80 : alLysValPheGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrAsnLe : 98 ||||| |||||||||:!!.!!||||||.!!|||.!! !! !||||||||| || alLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrThrLeuLe 256840 : tgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACACGTTGCT : 256896 99 : uLeuPheArgSerArgAsnIleSerAspCysValGluHisIleGluThrAspTrpGln : 117 ||||!!.!:!.!!!:!:!!||| !! !!|||||||||||||||||||||||||||::! uLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAspTrpArg 256897 : GTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGA : 256953 118 : IleValThrLysGluLysGlnGlnGlnValMetLeuLysHisAlaLysPheGlyArgT : 137 !!:|||! !!:!||||||.!.||||||||||||:!!|||:!!|||!:!|||||||||| MetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheGlyArgT 256954 : ATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTT : 257013 138 : yrValSerAlaIleCysAlaIlePheValHisSerGlyIleMetSerTyrCysIleVa : 156 |||||:!!.!!.!!|||||| !.!!:!!!!.||||||:::... ::: ::: yrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePheValSe 257014 : ACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttcttcgtGTC : 257070 157 : lSerAlaSerSerThrGlnIleIleLysValGlyAsnGluThrArgMetMetArgSer : 175 !|||||| !!:!|||:!!|||||| ! |||||||||||||||! !!!::!!||| ! rSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleValArgVal 257071 : GTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTGCGAGTG : 257127 176 : LeuProLeuGlyValTyrAsnArgMetIleProValAspThrSerProAlaAsnGluI : 195 ||||||:!! !||||||!!.!:!:!!:!: !|||||| !||||||.!!||||||| LeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrAsnGluI 257128 : CTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGA : 257187 196 : leValLeuValMetGlnPheLeuSerAlaPheIleThrAspSerSerGlyIleGlyPh : 214 |||||:!! !!|||||| !! !|||:!!.!!|||.!! !!!!||| !:!!.!!.! leValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrValSerIl 257188 : TCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAGTAT : 257244 215 : eTyrThrLeuAlaSerValLeuAlaAlaHisAlaCysGlyGlnLeuSerValLeuThr : 233 .!:!!:!||||||:!!|||!!!|||.!!||||||! !|||||||||!!!||||||! ! ePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrValLeuMet 257245 : ATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATG : 257301 234 : IleTrpIleSerAspTyrValAsnGluAlaGlyAsnArgLysGluAspAlaSerPheA : 253 ||||||!!!!!:!:!|||||||||:!! !!||||||:::::: |||! SerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheProPheL 257302 : TCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttcctttCA : 257361 254 : rgLysIleGlyThrIleValGluHisHisLeuArgThrLeu{As} >>>> Target : 267 :!:!!||||||..!|||||||||||||||||||||..!|||{..} 7 ysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Se}++ 257362 : AGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt........... : 257407 268 : Intron 1 >>>> {p}PheIleAlaArgIleGluGluValMetSerTrpValCys : 280 6 bp {!}||||||:!! !|||||||||||||||!:! ! :!!||| ++{r}PheIleSerTyrIleGluGluValMetAsnArgIleCys 257408 : ..............ag{T}TTCATATCATATATCGAGGAAGTGATGAACCGAATATGT : 257518 281 : MetThrGluLeuPheArgCysValLeuAlaIleCysMetValGlyTyrTyrIleValT : 300 .!. !|||||||||||||||..!|||||||||||||||:!!||||||||||||:!!. PheLeuGluLeuPheArgCysThrLeuAlaIleCysMetLeuGlyTyrTyrIleLeuA 257519 : TTTTTAGAGTTGTTTAGATGCACGCTGGCTATATGCATGCTGGGATACTACATTCTTG : 257578 301 : hr >>>> Target Intron 2 >>>> GluTrpSerAspHisAspValArgSer : 309 !! 684 bp ||||||||| !..|||::::::::: la++ ++GluTrpSerThrGlnAspIleGlnAsn 257579 : CGgt.........................aggaATGGTCTACGCaagatattcaaaat : 258289 310 : LeuThrSerTyrPheIleIlePheAlaSerValThrPheAsnThrPheLeuLeuCysT : 329 |||:::|||||||||!!:|||.!! !|||::::::|||||| |||::::::|||| LeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValIleCysT 258290 : ttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaatatgtt : 258349 330 : yrIleGlyGluLeuLeuThrGluGln >>>> Target Intron 3 >>>> Cys : 338 |||||||||||:!!|||||||||||| 90 bp ||| yrIleGlyGluIleLeuThrGluGln++ ++Cys 258350 : ACATAGGTGAAATATTAACAGAACAGgt.........................agTGC : 258466 339 : MetLysValGlyGluIleValTyrMetThrAsnTrpTyrIleLeuProArgLysArgI : 358 ! !|||||||||!!::!:||||||||||||:!!|||||| !|||||| !||||||| LysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspLysArgI 258467 : AAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAA : 258526 359 : leLeuGluLeuIleLeuIleIleAlaArgSerSerValValIleGluIleThrAlaGl : 377 |||||!!:|||||||||:!!|||||||||||||||||||||:!!:!!||||||||||| leLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleThrAlaGl 258527 : TACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGgg : 258583 378 : yLysLeuIleHisMetSerIleHisThrPheGlyAsp >>>> Target Intron : 390 ||||......||||||||||||:!!||||||.!!||| 69 bp yLysPhePheHisMetSerIleTyrThrPheSerAsp++ 258584 : aaaattctttcacatGTCCATTTACACATTCAGCGATgt................... : 258624 391 : 4 >>>> ValMetArgLeuAlaPheAlaTyrLeuAsnIleLeuCysGlnMetThr : 405 |||!!:!:! !:!!|||||||||||||||:!!||| !!|||:!::!! ++ValIleLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnValSer 258625 : ......agGTAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGTATCG : 258738 vulgar: gi|350396509|ref|XP_003484577.1| 1 405 . KQ414889.1 256607 258738 + 1253 M 265 795 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256608 258738 1253 + . gene_id 1 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256608 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256608 257404 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256608 258738 1253 + . alignment_id 1 ; Query gi|350396509|ref|XP_003484577.1| ; Align 256608 2 795 ; Align 257482 268 99 ; Align 258265 301 111 ; Align 258466 338 156 ; Align 258691 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1213 Query range: 1 -> 405 Target range: 259727 -> 262201 2 : AsnGluSerThrIleIleLysThrAspAlaLysSerHisSerAspTyrSerLeuGlnL : 21 |||:!!|||..!.!!:!!:!!|||..! !! ||||||||||||||||||||||||! AsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerLeuGlnP 259728 : AACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCCAAT : 259785 22 : euAsnArgTrpPheLeuLysProIleGlyAlaTrpProTyrPheSerThrThrSerTh : 40 !!|||||||||||||||||||||||||||||||||||| !! |||:!!|||!!!! heAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerThrThrAr 259786 : TTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCACGACCAG : 259842 41 : rLeuGluLysValIleSerValSerLeuIleIleLeuCysTyrValValIleLeuPhe : 59 !|||||||||:!!|||||||||! !||||||.!!:!!|||||| !..!|||||| !! gLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIleLeuVal 259843 : ACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATACTGGTC : 259899 60 : SerIleIleProCysValAlaHisLeuIlePheGluAspAspSerPheTyrArgLysV : 79 !!!:!:|||||||||||| !|||:!!:!!.!!||| ! !!:|||!!.|||! !|||. ThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrMetLysT 259900 : ACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAA : 259959 80 : alLysValPheGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrAsnLe : 98 .!||||||.!!||||||||| !|||||||||:!!||| !!||||||||||||!..|| hrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrThrThrLe 259960 : CGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTT : 260016 99 : uLeuPheArgSerArgAsnIleSerAspCysValGluHisIleGluThrAspTrpGln : 117 ||||!!.|||.!!|||:!!||| !..!||||||||||||:!:|||!.!||||||::! uLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAspTrpArg 260017 : GTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGA : 260073 118 : IleValThrLysGluLysGlnGlnGlnValMetLeuLysHisAlaLysPheGlyArgT : 137 |||:!!|||!:!||||||.!.|||.!.|||||||||!:!:!!|||||||||||||||| IleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgT 260074 : ATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGAT : 260133 138 : yrValSerAlaIleCysAlaIlePheValHisSerGlyIleMetSerTyrCysIleVa : 156 |||||:!!||| !|||||| !||||||!!..!!|||:!!:!!!!!!:!|||:!:|| yrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCysLeuVa 260134 : ACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGT : 260190 157 : lSerAlaSerSerThrGlnIleIleLysValGlyAsnGluThrArgMetMetArgSer : 175 |!!!!.!! !||||||:!!:!:|||:!!||||||||||||||||||!!::!:!.! ! lThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleValHisLeu 260191 : CACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTG : 260247 176 : LeuProLeuGlyValTyrAsnArgMetIleProValAspThrSerProAlaAsnGluI : 195 ||||||! !!.!||||||!!...!:!!||| !|||:!! !|||||| !||||||| LeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetAsnGluI 260248 : TTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGA : 260307 196 : leValLeuValMetGlnPheLeuSerAlaPheIleThrAspSerSerGlyIleGlyPh : 214 |||||||||||:!!||||||:!!|||!.!||||||..!:!!|||||| !:!!|||.! leValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrValGlyIl 260308 : TTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAAT : 260364 215 : eTyrThrLeuAlaSerValLeuAlaAlaHisAlaCysGlyGlnLeuSerValLeuThr : 233 !!:!!:!||||||:!!||||||.!!|||||||||||||||||||||!:!||||||! ! ePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMet 260365 : CTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATG : 260421 234 : IleTrpIleSerAspTyrValAsnGluAlaGlyAsnArgLysGluAspAlaSerPheA : 253 !||||||!!!!!:!:!|||:!!|||:!! !!|||||||||:!! ! ||| !!|||! GluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaProPheL 260422 : GAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTCCTTTCA : 260481 254 : rgLysIleGlyThrIleValGluHisHisLeuArgThrLeu{As} >>>> Target : 267 :!:!!||||||..!|||||||||||||||||||||.!!|||{ } 2 ysGluIleGlyValIleValGluHisHisLeuArgAlaLeu{Th}++ 260482 : AGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC{AC}gt........... : 260527 268 : Intron 1 >>>> {p}PheIleAlaArgIleGluGluValMetSerTrpValCys : 280 57 bp {!}||||||:!!|||||||||!!:||||||!:! !!:!!||| ++{r}PheIleSerArgIleGluAspValMetAsnArgIleCys 260528 : ..............ag{C}TTCATATCGCGTATCGAGGATGTGATGAACCGGATATGC : 260819 281 : MetThrGluLeuPheArgCysValLeuAlaIleCysMetValGlyTyrTyrIleValT : 300 .!. !|||||||||||||||..!|||! !||||||:!::!!||||||||||||:!!! PheLeuGluLeuPheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeuM 260820 : TTCCTGGAGTTGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATATTCTTA : 260879 301 : hr >>>> Target Intron 2 >>>> GluTrpSerAspHisAspValArgSer : 309 ! 852 bp ||||||:!!!!:!!.|||:!!!:!!:! et++ ++GluTrpAlaGluGlnAspIleGlnAsn 260880 : TGgt.........................agGAATGGGCTGAGCAAGATATACAAAAT : 261758 310 : LeuThrSerTyrPheIleIlePheAlaSerValThrPheAsnThrPheLeuLeuCysT : 329 |||:!!!!!||||||!!:!!:.!. !:!!:!! !||||||..!|||:!!:!!|||| LeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheIleIleCysT 261759 : CTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTT : 261818 330 : yrIleGlyGluLeuLeuThrGluGln >>>> Target Intron 3 >>>> Cys : 338 |||||||||||:!!|||||||||||| 81 bp ||| yrIleGlyGluIleLeuThrGluGln++ ++Cys 261819 : ACATCGGTGAAATACTAACGGAACAGgt.........................agTGC : 261926 339 : MetLysValGlyGluIleValTyrMetThrAsnTrpTyrIleLeuProArgLysArgI : 358 !|||||||||!!::!!||||||||||||||||||||| !|||||| !|||!!!| SerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuProAspLysSerI 261927 : TCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACCTGATAAAAGTA : 261986 359 : leLeuGluLeuIleLeuIleIleAlaArgSerSerValValIleGluIleThrAlaGl : 377 |||||!!:|||||||||||||||||||||!.! !! !! !! ! !!.!!! !..! leLeuAspLeuIleLeuIleIleAlaArgLysProProGlyAsn***PheLysCys-- 261987 : TCCTTGATTTGATTTTGATCATTGCACGAAAACCGCCGGGAAATTAGTTCAAATGT-- : 262043 378 : yLysLeuIleHisMetSer{Il} >>>> Target Intron 4 >>>> {e}His : 385 ::!!!!! !!.! !:!!{||} 75 bp {|}! -ArgPheThrArgSerAla{Il}++ ++{e}Pro 262044 : -CGGTTTACACGTTCGGCG{AT}gt.........................ag{T}CCG : 262139 386 : ThrPheGlyAspValMetArgLeuAlaPheAlaTyrLeuAsnIleLeuCysGlnMetT : 405 !.!. !.!.|||:!:!:! !||||||||||||||||||:!:||| !!||||||| LeuIlePheGlnValValLysThrAlaPheAlaTyrLeuAsnLeuLeuArgGlnMetT 262140 : TTGATATTCCAGGTGGTTAAAACTGCTTTCGCGTATCTGAATCTGTTGCGTCAAATGA : 262199 406 : hr : 405 || hr 262200 : CG : 262201 vulgar: gi|350396509|ref|XP_003484577.1| 1 405 . KQ414889.1 259727 262201 + 1213 M 265 795 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 39 117 G 1 0 M 6 18 S 0 2 5 0 2 I 0 71 3 0 2 S 1 1 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259728 262201 1213 + . gene_id 2 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259728 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259728 260524 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262062 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262062 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 262063 262064 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 262063 262137 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 262136 262137 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 262138 262201 . + . KQ414889.1 exonerate:protein2genome:local exon 262138 262201 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259728 262201 1213 + . alignment_id 2 ; Query gi|350396509|ref|XP_003484577.1| ; Align 259728 2 795 ; Align 260783 268 99 ; Align 261734 301 111 ; Align 261926 338 117 ; Align 262043 378 18 ; Align 262139 385 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1085 Query range: 1 -> 405 Target range: 236807 -> 238921 2 : AsnGluSerThrIleIleLysThrAspAlaLysSerHisSerAspTyrSerLeuGlnL : 21 :!!:!!!!!..!:!!! !:!!! !:!! !! :!! !||||||||||||||||||! AspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnT 236808 : GACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGT : 236865 22 : euAsnArgTrpPheLeuLysProIleGlyAlaTrpProTyrPheSerThrThrSerTh : 40 !||||||||| :!!||| !||||||.!!|||||| ! |||||| |||!. rpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSer------SerAs 236866 : GGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCG------TCGAA : 236916 41 : rLeuGluLysValIleSerValSerLeuIleIleLeuCysTyrValValIleLeuPhe : 59 !||||||!:! !|||||| !! !|||! !:!::!!||||||..!!.!||||||||| nLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPhe 236917 : CCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTC : 236973 60 : SerIleIleProCysValAlaHisLeuIlePheGluAspAspSerPheTyrArgLysV : 79 ||||||||||||||| ! !||||||!!:.!.||| ! ! !!!||||||! !|||| SerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysV 236974 : TCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAG : 237033 80 : alLysValPheGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrAsnLe : 98 |||||:!!.!!||| !!|||.!!|||||| ! .!! !! !|||!:!||||||! || alLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLe 237034 : TGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCT : 237090 99 : uLeuPheArgSerArgAsnIleSerAspCysValGluHisIleGluThrAspTrpGln : 117 ||||.!.||| !!!:!!.!||| !! !!! ! !!.!.|||!!:||||||||||||::! uLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArg 237091 : GTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGA : 237147 118 : IleValThrLysGluLysGlnGlnGlnValMetLeuLysHisAlaLysPheGlyArgT : 137 ! ..!|||::::::::::::::::::||||||||||||:!!|||||||||.!!|||| ThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgT 237148 : ACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGAT : 237207 138 : yrValSerAlaIleCysAlaIlePheValHisSerGlyIleMetSerTyrCysIleVa : 156 ||!.!:!! ! !|||.!!||||||:!!|||.!!||||||:!:.!!||||||:!!:! yrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMe 237208 : ACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTAT : 237264 157 : lSerAlaSerSerThrGlnIleIleLysValGlyAsnGluThrArgMetMetArgSer : 175 !!!!||||||!!!|||..!:!!:!! !|||||||||:!!|||! !!!::!!||| ! tThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLeuArgVal 237265 : GACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGCGTG : 237321 176 : LeuProLeuGlyValTyrAsnArgMetIleProValAspThrSerProAlaAsnGluI : 195 ||||||||| !:!!|||!!. !!:!::!!||||||||||||!:! !! !|||!!:| LeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnAspI 237322 : CTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGACA : 237381 196 : leValLeuValMetGlnPheLeuSerAlaPheIleThrAspSerSerGlyIleGlyPh : 214 |||||:!!:!! ||||||||||||!.!||||||.!!:!!!:!|||!.!|||.!! ! leValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSerVa 237382 : TCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAGTGT : 237438 215 : eTyrThrLeuAlaSerValLeuAlaAlaHisAlaCysGlyGlnLeuSerValLeuThr : 233 ! !:!|||.!!|||!.!|||.!!:!!||||||! !|||||||||||||||:!!! ! lIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValValMet 237439 : TATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTTATG : 237495 234 : IleTrpIleSerAspTyrValAsnGluAlaGlyAsnArgLysGluAspAlaSerPheA : 253 :!:! !|||..!|||!:!|||!:!|||||| !!..!||| !:!!|||! ! !||| LeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAspHisPheA 237496 : TTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATCATTTCG : 237555 254 : rgLysIleGlyThrIleValGluHisHisLeuArgThrLeu{As} >>>> Target : 267 !:!!||| !||||||||||||.!.|||||||||..!|||{:!} 6 spGluIleProThrIleValGluGluHisLeuArgValLeu{As}++ 237556 : ACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTG{AA}gt........... : 237601 268 : Intron 1 >>>> {p}PheIleAlaArgIleGluGluValMetSerTrpValCys : 280 8 bp {!}||||||:!!|||||||||! !:!!|||!:! !.!||| ++{n}PheIleSerArgIleGluAlaMetMetAsnLysAlaCys 237602 : ..............ag{C}TTCATATCGCGCATAGAGGCAATGATGAACAAAGCGTGT : 237704 281 : MetThrGluLeuPheArgCysValLeuAlaIleCysMetValGlyTyrTyrIleValT : 300 .!. !||||||.!.||||||:!!:!!|||:!!||| :!!|||||||||||| !!! PheLeuGluLeuMetArgCysMetIleAlaValCysAlaLeuGlyTyrTyrIlePheM 237705 : TTCCTGGAGTTAATGAGGTGCATGATAGCTGTATGCGCACTTGGATATTATATATTCA : 237764 301 : hr >>>> Target Intron 2 >>>> GluTrpSerAspHisAspValArgSer : 309 ! 645 bp ||||||:!!!!: !|||!.!!:!! ! et++ ++GluTrpAlaGluSerAspAlaLysIle 237765 : TGgt.........................agGAATGGGCAGAGAGCGATGCTAAAATC : 238436 310 : LeuThrSerTyrPheIleIlePheAlaSerValThrPheAsnThrPheLeuLeuCysT : 329 |||! !!!!||||||:!! !.!!!.!:!!:!!..!! !|||||||||:!!||||||| LeuIleThrTyrPheValAlaLeuValAlaIleValSerAsnThrPheIleLeuCysT 238437 : TTAATCACGTACTTTGTAGCACTCGTTGCTATTGTTTCTAATACATTTATACTCTGTT : 238496 330 : yrIleGlyGluLeuLeuThrGluGln >>>> Target Intron 3 >>>> Cys : 338 |||||.!!||| !|||||||||||| 106 bp ||| yrIleSerGluArgLeuThrGluGln++ ++Cys 238497 : ATATCAGCGAAAGGCTGACAGAACAGgt.........................agTGC : 238629 339 : MetLysValGlyGluIleValTyrMetThrAsnTrpTyrIleLeuProArgLysArgI : 358 :!!||||||||||||:!:||||||||||||:!!|||||| !||||||!:!!:!|||| LeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgI 238630 : TTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAA : 238689 359 : leLeuGluLeuIleLeuIleIleAlaArgSerSerValValIleGluIleThrAlaGl : 377 |||||!!:||||||||||||||| !||||||!:!||||||:!!:!!:!!|||||||| leLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValThrAlaGl 238690 : TCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCACCGCTGG : 238746 378 : yLysLeuIleHisMetSerIleHisThrPheGlyAsp >>>> Target Intron : 390 ||||:!!:!!|||||||||:!!:!!|||||||||||| 89 bp yLysValLeuHisMetSerLeuTyrThrPheGlyAsp++ 238747 : AAAAGTATTACATATGTCGCTTTACACGTTCGGCGATgt................... : 238787 391 : 4 >>>> ValMetArgLeuAlaPheAlaTyrLeuAsnIleLeuCysGlnMetThr : 405 |||:!:!:! !!.!|||||||||:!!|||!!:||||||||||||:!! ++ValValLysThrGlyPheAlaTyrMetAsnMetLeuCysGlnMetSer 238788 : ......agGTAGTAAAAACAGGATTCGCCTACATGAATATGCTTTGTCAAATGTCC : 238921 vulgar: gi|350396509|ref|XP_003484577.1| 1 405 . KQ414889.1 236807 238921 + 1085 M 35 105 G 2 0 M 228 684 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 33 99 5 0 2 I 0 641 3 0 2 M 37 111 5 0 2 I 0 102 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236808 238921 1085 + . gene_id 3 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 236808 237598 . + . KQ414889.1 exonerate:protein2genome:local exon 236808 237598 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 237599 237600 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 237599 237666 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 237665 237666 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 237667 237766 . + . KQ414889.1 exonerate:protein2genome:local exon 237667 237766 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 237767 237768 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 237767 238411 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 238410 238411 . + . intron_id 1 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 238412 238522 . + . KQ414889.1 exonerate:protein2genome:local exon 238412 238522 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238523 238524 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238523 238628 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 238627 238628 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238629 238784 . + . KQ414889.1 exonerate:protein2genome:local exon 238629 238784 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238785 238786 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238785 238873 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 238872 238873 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238874 238921 . + . KQ414889.1 exonerate:protein2genome:local exon 238874 238921 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 236808 238921 1085 + . alignment_id 3 ; Query gi|350396509|ref|XP_003484577.1| ; Align 236808 2 105 ; Align 236913 39 684 ; Align 237668 268 99 ; Align 238412 301 111 ; Align 238629 338 156 ; Align 238874 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 978 Query range: 1 -> 300 Target range: 266592 -> 267558 2 : AsnGluSerThrIleIleLysThrAspAlaLysSerHisSerAspTyrSerLeuGlnL : 21 ||||||||| !:!!|||:!!.!!:!! !!!.|||! ||||||||||||||||||| AsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerLeuGlnL 266593 : AACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCCTGCAAT : 266650 22 : euAsnArgTrpPheLeuLysProIleGlyAlaTrpProTyrPheSerThrThrSerTh : 40 |||||||||||||||||||||||||||||||||||||| !!.||| !||||||! euAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuThrSerLy 266651 : TGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCACATCTAA : 266707 41 : rLeuGluLysValIleSerValSerLeuIleIleLeuCysTyrValValIleLeuPhe : 59 !||||||::!:!!:!!||| !:!!||||||:!!:!!|||||| ! !||||||||| sLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIleLeuPhe 266708 : ACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATACTGTTC : 266764 60 : SerIleIleProCysValAlaHisLeuIlePheGluAspAspSerPheTyrArgLysV : 79 !!!:!!|||||||||:!! !||||||:!!.!.||||||!!:|||.!! !! !|||| ThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgThrLysV 266765 : ACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTACGAAAG : 266824 80 : alLysValPheGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrAsnLe : 98 ||||||||||||||||||||.!!|||||||||:!!||||||||||||||||||!..|| alLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrThrThrLe 266825 : TGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACACCACACT : 266881 99 : uLeuPheArgSerArgAsnIleSerAspCysValGluHisIleGluThrAspTrpGln : 117 ||||.!.||||||!:!.!.||| !!! !||||||||||||!!::!!|||||||||::! uLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArg 266882 : GTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGATTGGAGG : 266938 118 : IleValThrLysGluLysGlnGlnGlnValMetLeuLysHisAlaLysPheGlyArgT : 137 |||||||||!:! !:!!.!.:!!|||||||||||||||:!!|||!:!.!!||||||| IleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleGlyArgT 266939 : ATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCGGTCGTT : 266998 138 : yrValSerAlaIleCysAlaIlePheValHisSerGlyIleMetSerTyrCysIleVa : 156 ||:!!:!! !.!!|||||| |||:!!!!.!!!|||:!!:!:.!!||||||:!::! yrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCysValIl 266999 : ACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGTGAT : 267055 157 : lSerAlaSerSerThrGlnIleIleLysValGlyAsnGluThrArgMetMetArgSer : 175 !!!!|||! !!!!! !|||! !:!::!!||||||||||||||||||!!::!:!.! ! eThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleValHisLeu 267056 : AACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTACATCTG : 267112 176 : LeuProLeuGlyValTyrAsnArgMetIleProValAspThrSerProAlaAsnGluI : 195 ||||||! !!.!||||||!!.!:!|||||| !!|||||||||||||||.!!||||||| LeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrAsnGluI 267113 : TTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGAACGAGA : 267172 196 : leValLeuValMetGlnPheLeuSerAlaPheIleThrAspSerSerGlyIleGlyPh : 214 ||||||||||| ||||||:!!|||!.!||||||..!:!!||||||! !:!!||| leValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValValGlyAl 267173 : TTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCGGTGC : 267229 215 : eTyrThrLeuAlaSerValLeuAlaAlaHisAlaCysGlyGlnLeuSerValLeuThr : 233 !!:!!:!||||||:!!|||!!!|||||||||||||||||||||||||||||||||! ! aPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerValLeuMet 267230 : TTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTGATG : 267286 234 : IleTrpIleSerAspTyrValAsnGluAlaGlyAsnArgLysGluAspAlaSerPheA : 253 !!:||||||!.!!!:!:!||||||..!:!! !!:!!!!!!!.:!!:!!!.!!!!||| MetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValCysPheA 267287 : ATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTTGCTTCG : 267346 254 : rgLysIleGlyThrIleValGluHisHisLeuArgThrLeu{As} >>>> Target : 267 !|||||||||..!:!!||||||||||||||||||..!|||{..} 6 spLysIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 267347 : ATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG}gt........... : 267392 268 : Intron 1 >>>> {p}PheIleAlaArgIleGluGluValMetSerTrpValCys : 280 9 bp {!}||||||||||||||||||...||||||||| :!!||| ++{r}PheIleAlaArgIleGluSerValMetSerGluIleCys 267393 : ..............ag{C}TTCATAGCACGTATCGAAAGTGTAATGAGCGAAATTTGC : 267496 281 : MetThrGluLeuPheArgCysValLeuAlaIleCysMetValGlyTyrTyrIleValT : 300 .!.! !|||||||||!:!|||..!:!!! !||||||:!!:!!.!!|||||||||:!!| PheMetGluLeuPheLysCysThrMetAspIleCysValLeuSerTyrTyrIleLeuT 267497 : TTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCTATTATATCCTTA : 267556 301 : hr : 300 || hr 267557 : CG : 267558 vulgar: gi|350396509|ref|XP_003484577.1| 1 300 . KQ414889.1 266592 267558 + 978 M 265 795 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266593 267558 978 + . gene_id 4 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266593 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266593 267389 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267558 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267558 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266593 267558 978 + . alignment_id 4 ; Query gi|350396509|ref|XP_003484577.1| ; Align 266593 2 795 ; Align 267460 268 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 909 Query range: 6 -> 300 Target range: 274353 -> 275309 7 : IleLysThrAspAlaLysSerHisSerAspTyrSerLeuGlnLeuAsnArgTrpPheL : 26 :!!! .!!:!! ! ! |||! !|||||||||||||||||||||||||||||||||| ValThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheL 274354 : GTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCT : 274411 27 : euLysProIleGlyAlaTrpProTyrPheSerThrThrSerThrLeuGluLysValIl : 45 |||||||||||||||||||||||! !||| !!|||!!!! !!!!|||::!:!!:! euLysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLe 274412 : TGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCT : 274468 46 : eSerValSerLeuIleIleLeuCysTyrValValIleLeuPheSerIleIleProCys : 64 !||| ! ||||||...||||||||| ! !!||||||! !!!!:!!|||||| !! uSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSer 274469 : TTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGC : 274525 65 : ValAlaHisLeuIlePheGluAspAspSerPheTyrArgLysValLysValPheGlyP : 84 :!! !|||:!!|||.!.! !|||!!:|||.!!:!!! !|||:!!|||:!!.!!|||| IlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyP 274526 : ATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTC : 274585 85 : roLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrAsnLeuLeuPheArgSerAr : 103 ||||||||||||||||||||||||||||||||||||||!..||||||.!.||||||!: roLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLy 274586 : CTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAA : 274642 104 : gAsnIleSerAspCysValGluHisIleGluThrAspTrpGlnIleValThrLysGlu : 122 !.!.||| !!! !||||||||||||!!::!!|||||||||::!|||||||||!:! ! sGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgPro 274643 : AGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCG : 274699 123 : LysGlnGlnGlnValMetLeuLysHisAlaLysPheGlyArgTyrValSerAlaIleC : 142 :!!.!.||||||||||||||||||:!!||||||.!!||||||||||||:!! !.!!| GluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheC 274700 : GAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCT : 274759 143 : ysAlaIlePheValHisSerGlyIleMetSerTyrCysIleValSerAlaSerSerTh : 161 ||||| |||:!!!!.!!!|||:!!:!:!!!||||||:!::!!!!!|||! !!!!! ysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMe 274760 : GTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTAT : 274816 162 : rGlnIleIleLysValGlyAsnGluThrArgMetMetArgSerLeuProLeuGlyVal : 180 !|||! !:!!:!!||||||||||||||||||! :!!!.!! !||||||! ! !!.! tGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAla 274817 : GCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCT : 274873 181 : TyrAsnArgMetIleProValAspThrSerProAlaAsnGluIleValLeuValMetG : 200 |||!!.!:!!!::!! !!|||||||||||||||.!!|||||||||||||||!.! !| TyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerG 274874 : TACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGC : 274933 201 : lnPheLeuSerAlaPheIleThrAspSerSerGlyIleGlyPheTyrThrLeuAlaSe : 219 |||||:!!|||!.!||||||..!:!!||||||!.!:!!||| !:!!:!||||||:! lnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAl 274934 : AATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGC : 274990 220 : rValLeuAlaAlaHisAlaCysGlyGlnLeuSerValLeuThrIleTrpIleSerAsp : 238 !|||!!!||||||||||||! !||||||||||||||||||! !|||||||||!!!!!: aValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGlu 274991 : CGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAG : 275047 239 : TyrValAsnGluAlaGlyAsnArgLysGluAspAlaSerPheArgLysIleGlyThrI : 258 !:!||||||.!.:!! !!:!::::...::::::... ||| !:!!||||||..!: PheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValV 275048 : TTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGG : 275107 259 : leValGluHisHisLeuArgThrLeu{As} >>>> Target Intron 1 >>>> : 267 !!||||||||||||||||||..!|||{..} 74 bp alValGluHisHisLeuArgValLeu{Se}++ + 275108 : TTGTCGAACATCATCTGAGGGTACTC{AG}gt.........................a : 275208 268 : {p}PheIleAlaArgIleGluGluValMetSerTrpValCysMetThrGluLeuPhe : 285 {!}||||||||||||||||||!!:||||||!:! ! :!!|||.!.! !||||||||| +{r}PheIleAlaArgIleGluAspValMetAsnArgIleCysPheMetGluLeuPhe 275209 : g{T}TTCATAGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAATTGTTC : 275262 286 : ArgCysValLeuAlaIleCysMetValGlyTyrTyrIleValThr : 300 !:!|||..!|||! !!!:||||||:!!||||||||||||:!!||| LysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleLeuThr 275263 : AAGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTCTCACG : 275309 vulgar: gi|350396509|ref|XP_003484577.1| 6 300 . KQ414889.1 274353 275309 + 909 M 260 780 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274354 275309 909 + . gene_id 5 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274354 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274354 275135 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275309 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275309 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274354 275309 909 + . alignment_id 5 ; Query gi|350396509|ref|XP_003484577.1| ; Align 274354 7 780 ; Align 275211 268 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 858 Query range: 12 -> 340 Target range: 262837 -> 264657 13 : SerHisSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaT : 32 |||! !||||||||||||||||||:!!|||||||||.!.||||||||||||||||||| SerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaT 262838 : AGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCAT : 262895 33 : rpProTyrPheSerThrThrSerThrLeuGluLysValIleSerValSerLeuIleIl : 51 ||||| ! !:!!:!!! !|||! !:!!|||::!:!!|||!!! !! !||||||:! rpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleVa 262896 : GGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGT : 262952 52 : eLeuCysTyrValValIleLeuPheSerIleIleProCysValAlaHisLeuIlePhe : 70 !:!!|||||| !:!!||||||! !!!!:!!||||||! !:!! !|||:!!:!!.!. lValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeu 262953 : CGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTA : 263009 71 : GluAspAspSerPheTyrArgLysValLysValPheGlyProLeuGlyHisTrpPheI : 90 |||! !!!:!:!|||:!!! !|||:!!:!!|||.!!||||||||||||!!.||||||: GluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheV 263010 : GAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCG : 263069 91 : leGlyGlyIleAsnTyrThrAsnLeuLeuPheArgSerArgAsnIleSerAspCysVa : 109 !!||| !|||||||||||| ||||||.!!!.!|||!:!:!!|||..!! !||||| alGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysVa 263070 : TCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGT : 263126 110 : lGluHisIleGluThrAspTrpGlnIleValThrLysGluLysGlnGlnGlnValMet : 128 |:!!|||:!::!! !|||||| |||||||||!:! !:!!.!.|||!:::!!||| lGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMet 263127 : GCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATG : 263183 129 : LeuLysHisAlaLysPheGlyArgTyrValSerAlaIleCysAlaIlePheValHisS : 148 ||||||:!!||||||!:!||||||||||||:!!||| !||||||||||||:!!!!.! LeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnT 263184 : CTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAA : 263243 149 : erGlyIleMetSerTyrCysIleValSerAlaSerSerThrGlnIleIleLysValGl : 167 !!.!!||||||!!! ! |||:!!|||!!!|||! !!!!||||||:!:|||:!!! !|| hrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGl 263244 : CGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGG : 263300 168 : yAsnGluThrArgMetMetArgSerLeuProLeuGlyValTyrAsnArgMetIlePro : 186 |||||||||||||!!::!:|||! !||||||! ! !||||||!!...!!!:|||||| yAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLysGluIleIlePro 263301 : TAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCA : 263357 187 : ValAspThrSerProAlaAsnGluIleValLeuValMetGlnPheLeuSerAlaPheI : 206 |||||||||!:!|||.!!||||||||| !!|||!.!! !||||||||||||!.!|||| ValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheI 263358 : GTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCA : 263417 207 : leThrAspSerSerGlyIleGlyPheTyrThrLeuAlaSerValLeuAlaAlaHisAl : 225 ||..! !:!!!!! !:!!||| !!:! !:!!.!!:!!|||!!!|||!.!||||| leValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAl 263418 : TCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGC : 263474 226 : aCysGlyGlnLeuSerValLeuThrIleTrpIleSerAspTyrValAsnGluAlaGly : 244 |||||||||||||!:!||||||! ! !||||||!!!!!:!:!||||||:!!:!! !! aCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArg 263475 : TTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGG : 263531 245 : AsnArgLysGluAspAlaSerPheArgLysIleGlyThrIleValGluHisHisLeuA : 264 :!!..!!!.:!!:!! !! !|||! !:!!||||||..!||||||||||||||||||| AspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuA 263532 : GATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGA : 263591 265 : rgThrLeu<-><->AspPheIle{A} >>>> Target Intron 1 >>>> {la : 270 ||..!||| |||!!..!!{!} 66 bp { ! rgValLeuArg***AspLeuPhe{A}++ ++{sp 263592 : GAGTTCTGAGGTAAGATTTGTTT{G}gt.........................ag{AT : 263682 271 : }ArgIleGluGluValMetSerTrpValCysMetThrGluLeuPheArgCysValLeu : 289 }||||||:!!.!.||||||||| !:!!|||.!...!|||||||||!:!..!..!||| }ArgIleLysAsnValMetSerThrIleCysPheValGluLeuPheLysAlaThrLeu 263683 : }CGTATTAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCAAGGCTACGCTG : 263738 290 : AlaIleCys{Me} >>>> Target Intron 2 >>>> {t}ValGlyTyrTyrI : 298 ! !||||||{!!} 764 bp {:}:!! ! ! !!: AspIleCys{Il}+- +-{e}IleThrIleAspV 263739 : GATATATGC{AT}gc.........................aa{T}ATAACAATTGACG : 264529 299 : leValThrGluTrpSerAspHisAspValArgSerLeuThrSerTyrPheIleIlePh : 317 !! !! !||||||..!..!||||||:::::::::||||||!!!||||||!!:|||.! alPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLe 264530 : TTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATACT : 264586 318 : eAlaSerValThrPheAsnThrPheLeuLeuCysTyrIleGlyGluLeuLeuThrGlu : 336 . !|||:!! ! !|||! !||||||:!!|||||||||||||||:!!||||||||| uIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGlu 264587 : GATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAG : 264643 337 : GlnCysMetLys : 340 ||| :::||| GlnValIleLys 264644 : caggtaattaaa : 264657 vulgar: gi|350396509|ref|XP_003484577.1| 12 340 . KQ414889.1 262837 264657 + 858 M 254 762 G 0 6 M 3 9 S 0 1 5 0 2 I 0 62 3 0 2 S 1 2 M 22 66 S 0 2 5 0 2 I 0 760 3 0 2 S 1 1 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262838 264657 858 + . gene_id 6 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262838 263615 . + . KQ414889.1 exonerate:protein2genome:local exon 262838 263615 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263616 263617 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263616 263681 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263680 263681 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 263682 263751 . + . KQ414889.1 exonerate:protein2genome:local exon 263682 263751 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263752 263753 . + . intron_id 2 ; splice_site "GC" KQ414889.1 exonerate:protein2genome:local intron 263752 264515 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264514 264515 . + . intron_id 1 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 264516 264657 . + . KQ414889.1 exonerate:protein2genome:local exon 264516 264657 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262838 264657 858 + . alignment_id 6 ; Query gi|350396509|ref|XP_003484577.1| ; Align 262838 13 762 ; Align 263606 267 9 ; Align 263684 271 66 ; Align 264517 294 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 739 Query range: 0 -> 390 Target range: 232411 -> 235147 1 : MetAsnGluSerThrIleIleLysThrAspAlaLysSerHisSerAspTyrSerLeuG : 20 ||| !!:|||:!! ! !! ! !:!!|||! ! !! !!! !!!:||||||:!!| MetLeuAspSerSerArgAspThrLeuAsnAlaThrArgAspTyrGluTyrSerIleG 232412 : ATGCTGGACTCGTCCCGCGACACGTTGAACGCTACGCGAGACTACGAGTACAGCATCC : 232469 21 : lnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProTyrPheSerThrThrSe : 39 ||:!!|||||||||||||||! !|||!!:|||||||||||| ! !!!!! !||||| lnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgValThrGluThrSe 232470 : AGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTGTTACAGAGACCTC : 232526 40 : rThrLeuGluLysValIleSerValSerLeuIleIleLeuCysTyrValValIleLeu : 58 |! ! !:!!:!!:!!:!!:!! ! !|||! !:!! !|||:!! !:!!!!::!! rArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHisSerLeuMetIle 232527 : GAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCATTCTCTGATGATC : 232583 59 : PheSerIleIleProCysValAlaHisLeuIlePheGluAspAspSerPheTyrArgL : 78 ! !||||||:!!||||||:!! ! !:!!:!:||||||||| |||.!. ! ..!! SerSerIleValProCysIleLeuPheIleLeuPheGluAspThrSerLeuGluGluA 232584 : TCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACGAGCCTAGAGGAAA : 232643 79 : ysValLysValPheGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrAs : 97 :!:!!||| !.!!||||||:!!.!!|||!::.!.!!:|||! !:!:|||||| ! rgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluLeuAsnTyrCysCy 232644 : GGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAATTGAATTATTGCTG : 232700 98 : nLeuLeuPheArgSerArgAsnIleSerAspCysValGluHisIleGluThrAspTrp : 116 !|||||| !:!:!!!.!:!!||| ! !!|||||||||!!.:!::!! !|||||| sLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnValLysGlnAspTrp 232701 : CTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGTGAAACAGGACTGG : 232757 117 : GlnIleValThrLysGluLysGlnGlnGlnValMetLeuLysHisAlaLysPheGlyA : 136 !:!! !|||! !||| !!.!::.!.:!!|||||||||:!!||||||.!!|||| ArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsnAlaLysLeuGlyA 232758 : CGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAACGCGAAACTTGGAC : 232817 137 : rgTyrValSerAlaIleCysAlaIlePheValHisSerGlyIleMetSerTyrCysIl : 155 ||! :!!:!!..!|||..!|||.!!! !:!!|||!!!|||:!! ||| !! || rgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValGlySerAspGluIl 232818 : GTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCGGCTCCGACGAAAT : 232874 156 : eValSerAlaSerSerThrGlnIleIleLysValGlyAsnGluThrArgMetMetArg : 174 ||||!!!!.! ! !!! !...! .!! ! ||||||||||||!:! ! !||| ! eValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSerTyrSerMetTyr 232875 : AGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAGTTACTCGATGTAC : 232931 175 : SerLeuProLeuGlyValTyrAsnArgMetIleProValAspThrSerProAlaAsnG : 194 !!||||||! ! ! !!|||!..!:!:!!!!: !..! !||||||.!!|||| ProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPheSerProThrAsnG 232932 : CCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTCAGTCCGACGAACG : 232991 195 : luIleValLeuValMetGlnPheLeuSerAlaPheIleThrAspSerSerGlyIleGl : 213 |||||:!!!!!|||:!:|||! !||||||!.!||||||..!:!!||| ! !:!:|| luIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnSerValThrValGl 232992 : AGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGG : 233048 214 : yPheTyrThrLeuAlaSerValLeuAlaAlaHisAlaCysGlyGlnLeuSerValLeu : 232 | !! ! !|||!.!:!!||||||||| !||||||||||||||||||!:!|||:!! yAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGlnLeuAsnValVal 233049 : AGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACAGCTGAACGTGGTG : 233105 233 : ThrIleTrpIleSerAspTyrValAsnGluAlaGlyAsnArgLysGluAspAlaSerP : 252 ! ! :!:..!|||! |||:!!! ! !||| !:!:!!||| !.!:!! MetSerLysLeuAspAspLeuValAspAlaLysGly---GlnGluGluArgValAlaG 233106 : ATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGG---CAGGAGGAGAGAGTCGCGC : 233162 253 : heArgLysIleGlyThrIleValGluHisHisLeuArgThrLeuAsp{P} >>>> T : 268 ||||||:!!||| !||||||||||||||||||||||||||| {|} lnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeuArg{P}-+ 233163 : AGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTAAGG{T}at...... : 233213 269 : arget Intron 1 >>>> {he}IleAlaArgIleGluGluValMetSerTrpVal : 279 1501 bp {||}! ! !!.!:!!.!.||| !! !!!|||! ! ++{he}AsnIleAsnValAsnGluGlnSerThrTrpAsp 233214 : ...................ag{TT}AATATCAATGTTAACGAACAAAGTACATGGGAT : 234744 280 : CysMetThrGluLeuPheArgCysValLeuAlaIleCysMetValGlyTyrTyrIleV : 299 ! ||||||:::||| !! !! !:!: ! !! ! !:!!. ArgTyrThrGluIlePheIleGluPheSerArgAsnSerLeuCysLysCysIleLeuT 234745 : CGGtacactgaaattttcatcgaattttcgCGTAACTCTTTATGCAAATGTATTTTAA : 234804 300 : alThrGluTrpSerAspHisAspValArgSerLeuThrSerTyrPheIleIlePheAl : 318 .!:!!:!! !!: ! ... ......|||.!!|||||| !!|||:!:!:!!. hrSerGln------GluLysSerLysGluLysLeuAlaSerTyrValIleValTyrVa 234805 : CTTCTCAG------GAAAAgtcgaaggaaaaattagCTTCATACGTCATCGTGTACGT : 234855 319 : aSerValThrPheAsnThrPheLeuLeuCysTyrIleGlyGluLeuLeuThrGluGln : 337 !|||:!!||||||||| |||:::...||||||||||||||| !|||||||||||| lSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGln 234856 : GTCCATGACATTtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGCAG : 234912 338 : >>>> Target Intron 2 >>>> CysMetLysValGlyGluIleValTyrMe : 347 74 bp |||! ||||||||||||! !|||||||| ++ ++CysThrLysValGlyGluLysValTyrMe 234913 : gt.........................agTGTACCAAAGTCGGAGAAAAAGTGTACAT : 235016 348 : tThrAsnTrpTyrIleLeuProArgLysArgIleLeuGluLeuIleLeuIleIleAla : 366 ||||.!.|||||| ||||||!.!|||! ! !|||! |||:!!:!!||||||:!! tThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSer 235017 : GACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCC : 235073 367 : ArgSerSerValValIleGluIleThrAlaGlyLysLeuIleHisMetSerIleHisT : 386 |||||||||:!!||||||:!!|||||||||||||||!!!:!!!!.||||||:!! | ArgSerSerMetValIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaT 235074 : AGGTCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAA : 235133 387 : hrPheGlyAspVal : 390 |||||||||||||| hrPheGlyAspVal 235134 : CATTTGGCGATGTG : 235147 vulgar: gi|350396509|ref|XP_003484577.1| 0 390 . KQ414889.1 232411 235147 + 739 M 244 732 G 1 0 M 22 66 S 0 1 5 0 2 I 0 1497 3 0 2 S 1 2 M 33 99 G 2 0 M 34 102 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232412 235147 739 + . gene_id 7 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232412 233210 . + . KQ414889.1 exonerate:protein2genome:local exon 232412 233210 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233211 233212 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 233211 234711 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234710 234711 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234712 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234712 234914 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232412 235147 739 + . alignment_id 7 ; Query gi|350396509|ref|XP_003484577.1| ; Align 232412 1 732 ; Align 233144 246 66 ; Align 234714 269 99 ; Align 234813 304 102 ; Align 234989 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 514 Query range: 15 -> 337 Target range: 212869 -> 214740 16 : AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProTyrP : 35 ::: |||::: !! !|||||||||.!!|||||||||! ||| !|||||| !! AsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspL 212870 : aatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACA : 212927 36 : heSerThrThrSerThrLeuGluLysValIleSerValSerLeuIleIleLeuCysTy : 54 ||| !..!||| !!:!!|||||| !|||:!! !! !:!!! !! !:!!||||| ysSerTyrValSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTy 212928 : AGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTA : 212984 55 : rValValIleLeuPheSerIleIleProCysValAlaHisLeuIlePheGluAspAsp : 73 |! !:!!||| !!:! !:!!||||||||| ! !:!!:!!.!!.!!!!:! ::: rGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGlu 212985 : CGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgag : 213041 74 : SerPheTyrArgLysValLysValPheGlyProLeuGlyHisTrpPheIleGlyGlyI : 93 :::...::::::::::!!:!!:!!|||||| !!!!!.! !!! ! !!.! ! AsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuT 213042 : aatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGT : 213101 94 : leAsnTyrThrAsnLeuLeuPheArgSerArgAsnIleSerAspCysValGluHisIl : 112 !!.||| !:::|||:!!.!!!.!.!! !:!!||| !! ||||||||||||!! rpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMe 213102 : GGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATAT : 213158 113 : eGluThrAspTrpGlnIleValThrLysGluLysGlnGlnGlnValMetLeuLysHis : 131 ::!! !||||||:!!! !:!!||| ! |||:!!.!.:!!:!!:!!||| ! !:!! tLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsn 213159 : GAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAAC : 213215 132 : AlaLysPheGlyArgTyrValSerAlaIleCysAlaIlePheValHisSerGlyIleM : 151 |||!..||||||!:! :!! !.!!|||||||||.!!|||:!!:!!!!!|||.!!! AlaSerPheGlyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheT 213216 : GCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCA : 213275 152 : etSerTyrCysIleValSerAlaSerSerThrGlnIleIleLysValGlyAsnGluTh : 170 !! !|||! !:!!||| ! !!! !|||.!!.!.! !!!: !!.!! !:!! !. hrPheTyrPheLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAs 213276 : CGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAA : 213332 171 : rArgMetMetArgSerLeuProLeuGlyValTyrAsnArgMetIleProValAspThr : 189 ! !! .!.|||..!:!! !:!! !|||! !.. !!!::!! !||| ! nValThrPheArgGlnMetValValProValSerArgPheIleValAspValArgTyr 213333 : CGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATAC : 213389 190 : SerProAlaAsnGluIleValLeuValMetGlnPheLeuSerAlaPheIleThrAspS : 209 ||||||!.!||||||||| !!!!!:!!!!:|||.!!:!!:!!!.! ! :!:! ! !!: SerProValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisA 213390 : AGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATG : 213449 210 : erSerGlyIleGlyPheTyrThrLeuAlaSerValLeuAlaAlaHisAlaCysGlyGl : 228 !!! !!.!:!:! ! !! !!:!||||||:!!|||!!!|||!.!|||||||||||||| laIleAlaValValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGl 213450 : CTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACA : 213506 229 : nLeuSerValLeuThrIleTrpIleSerAspTyrValAsnGluAlaGlyAsnArgLys : 247 |:!!.!!:!!|||! !! !|||:!:..! !!! :!!:!!! !! !:!!! !!.. nMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGlyArgGluAspMetSer 213507 : GATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGC : 213563 248 : GluAspAlaSerPheArgLysIleGlyThrIleValGluHisHisLeuArgThrLeu{ : 267 :!!:!!!.!..! !||| |||!.!..!||||||.!.!!.|||:!!|||! !|||{ LysAsnValAspAspArg---IleAlaValIleValAsnGlnHisValArgIleLeu{ 213564 : AAGAATGTGGACGACAGA---ATCGCGGTCATCGTGAACCAGCATGTGCGGATACTG{ : 213620 268 : As} >>>> Target Intron 1 >>>> {p}PheIleAlaArgIleGluGluVa : 275 !} 840 bp { }|||:!!! !! !:!:|||:!!!. Ly}++ ++{s}PheLeuGluLeuValGluLysAl 213621 : AA}gt.........................ag{A}TTCTTAGAGCTCGTGGAGAAAGC : 214484 276 : lMetSerTrpValCysMetThrGluLeuPheArgCysValLeuAlaIleCysMetVal : 294 !:!: !! |||! !.!..!!||||||!!. !|||..!:!! !:!!|||:!:||| aLeuArgGlnValSerPheAlaGluLeuLeuValCysThrValAsnLeuCysLeuVal 214485 : ACTTCGGCAAGTATCTTTCGCTGAATTATTAGTATGCACGGTGAATCTCTGTCTCGTT : 214541 295 : GlyTyrTyrIleValThr >>>> Target Intron 2 >>>> GluTrpSerAs : 304 ||||||||||||:!!||| 68 bp ||||||!:!.. GlyTyrTyrIleIleThr++ ++GluTrpAsnSe 214542 : GGATATTACATAATAACGgt.........................aggAATGGAATTC : 214639 305 : pHisAspValArgSerLeuThrSerTyrPheIleIlePheAlaSerValThrPheAsn : 323 .:!!:!!:!!! !!!! !..!!!!||| ! :!::!:!:! !|||:::||||||||| rAsnAsnLeuThrThrThrValThrTyrValValLeuTyrIleSerLeuThrPheAsn 214640 : GAACAATTTAACAACTACAGTAACTTACGTGGTGTTGTATATCTCTCtcactttcaat : 214696 324 : ThrPheLeuLeuCysTyrIleGlyGluLeuLeuThrGluGln : 337 |||:::...||||||||||||||||||:!!:!!|||||| IlePheIlePheCysTyrIleGlyGluLeuValSerGluGln 214697 : attttcatattttgttaCATAGGCGAGCTTGTGTCTGAACAG : 214740 vulgar: gi|350396509|ref|XP_003484577.1| 15 337 . KQ414889.1 212869 214740 + 514 M 238 714 G 1 0 M 12 36 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 M 33 99 5 0 2 I 0 64 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212870 214740 514 + . gene_id 8 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212870 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 212870 213621 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212870 214740 514 + . alignment_id 8 ; Query gi|350396509|ref|XP_003484577.1| ; Align 212870 16 714 ; Align 213584 255 36 ; Align 214463 268 99 ; Align 214630 301 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 486 Query range: 9 -> 337 Target range: 217153 -> 219439 10 : AspAlaLysSerHisSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI : 29 !!: :::...::: ::: |||:!!|||! !|||||||||!!.|||||||||! GluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProM 217154 : GAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGA : 217211 30 : leGlyAlaTrpProTyrPheSerThrThrSerThrLeuGluLysValIleSerValSe : 48 !:||| !|||||| !!! !!||||||!!!! !! !..!|||:!!:!!! ! ! etGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLe 217212 : TGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACT : 217268 49 : rLeuIleIleLeuCysTyrValValIleLeuPheSerIleIleProCysValAlaHis : 67 !:!!! ! !|||||||||! !:!!||| !||| !.!!:!!|||||| ! !:!! uIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyr 217269 : GATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTAC : 217325 68 : LeuIlePheGluAspAspSerPheTyrArgLysValLysValPheGlyProLeuGlyH : 87 :!!.!!.!!|||! !!!:..!.!!||| !|||:!!|||:!!|||||||||||| ! ValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIleP 217326 : GTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCT : 217385 88 : isTrpPheIleGlyGlyIleAsnTyrThrAsnLeuLeuPheArgSerArgAsnIleSe : 106 !!! ! !!:!.! !:!!!!.||| !::!|||:!! !!!.!!.! !:!!||| ! heCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleAr 217386 : TCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCG : 217442 107 : rAspCysValGluHisIleGluThrAspTrpGlnIleValThrLysGluLysGlnGln : 125 !!!:||||||..!...|||||| !||||||::!! !|||! ! ||||||.!.::! gGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArg 217443 : CGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGG : 217499 126 : GlnValMetLeuLysHisAlaLysPheGlyArgTyrValSerAlaIleCysAlaIleP : 145 :!!!.!|||:!! !:!!|||!!.||||||||| ! :!! ! !:!!|||.!!.!!| GluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPheP 217500 : GAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCT : 217559 146 : heValHisSerGlyIleMetSerTyrCysIleValSerAlaSerSerThrGlnIleIl : 164 ||:!!:!!||||||...::: ||| |||!.!! ! !!! !|||..! !! !|| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIl 217560 : TCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAAT : 217616 165 : eLysValGlyAsnGluThrArgMetMetArgSerLeuProLeuGlyValTyrAsnArg : 183 | ! !! !|||! !!.!! !! .!.! ! !!||| !!!! ! !! !!. ! eLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyr 217617 : TCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTAT : 217673 184 : MetIleProValAspThrSerProAlaAsnGluIleValLeuValMetGlnPheLeuS : 203 !!:||| !..! ! !!!!|||.!!||||||||||||!!! !!:!:|||!!.:!!: IleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleA 217674 : ATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCG : 217733 204 : erAlaPheIleThrAspSerSerGlyIleGlyPheTyrThrLeuAlaSerValLeuAl : 222 !!!.! !:!:! ! !!.!!! ! ! !.! !! !!:!||||||:!!!.!!!!|| laGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAl 217734 : CTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGC : 217790 223 : aAlaHisAlaCysGlyGlnLeuSerValLeuThrIleTrpIleSerAspTyrValAsn : 241 |!.!|||||||||||||||:!!..!||||||! !! !|||:!:..! !!! :!!:!! aValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAsp 217791 : GGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGAC : 217847 242 : GluAlaGlyAsnArgLysGluAspAlaSerPheArgLysIleGlyThrIleValGluH : 261 ! !!.!:!!! !!..!!: !!.!..! !||| |||!.!!:!||||||...! GlyArgAlaAspMetSerAspThrValAspGlyArg---IleAlaSerIleValSerG 217848 : GGTAGAGCGGATATGAGCGATACTGTGGATGGTAGA---ATCGCGAGCATCGTCAGTC : 217904 262 : isHisLeuArgThrLeu{As} >>>> Target Intron 1 >>>> {p}PheIl : 269 !.|||:!!|||! !|||{ !} 1229 bp { }|||:: lnHisValArgIleLeu{Ly}++ ++{s}PheLe 217905 : AACACGTTCGGATATTA{AA}gt.........................ag{a}ttttt : 219157 270 : eAlaArgIleGluGluValMetSerTrpValCysMetThrGluLeuPheArgCysVal : 288 :.!!! !! !|||..!..!:!:..! :!!! !.!..!!|||!!!.!. !!|||..! uThrLeuThrGluArgThrLeuGlnGlnIleSerPheAlaGluPheLeuGlyCysThr 219158 : gaCGCTCACAGAGAGAACCCTCCAGCAAATCTCTTTCGCTGAATTTCTAGGATGCACC : 219214 289 : LeuAlaIleCysMetValGlyTyrTyrIleVal >>>> Target Intron 2 >> : 300 :!!! !||||||:!:|||||||||||||||:!! 76 bp MetAspIleCysLeuValGlyTyrTyrIleIle++ 219215 : ATGGACATATGTCTCGTTGGATATTACATTATCgt....................... : 219252 301 : >> ThrGluTrpSerAspHisAspValArgSerLeuThrSerTyrPheIleIlePhe : 317 !||||||!.!...:!!||||||! !||| !..!!!!|||.!!|||:!!.!! +-***GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeu 219253 : ..aatAGGAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTT : 219377 318 : AlaSerValThrPheAsnThrPheLeuLeuCysTyrIleGlyGluLeuLeuThrGluG : 337 !|||:!:||||||||| |||:::...|||||||||||||||:!!:!!.!!|||| IleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluG 219378 : ATATCCCTcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAAC : 219437 338 : ln : 337 || ln 219438 : Ag : 219439 vulgar: gi|350396509|ref|XP_003484577.1| 9 337 . KQ414889.1 217153 219439 + 486 M 244 732 G 1 0 M 12 36 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 32 96 5 0 2 I 0 72 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217154 219439 486 + . gene_id 9 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217154 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217154 217923 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219249 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219249 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219250 219251 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219250 219325 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219324 219325 . + . intron_id 1 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 219326 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219326 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217154 219439 486 + . alignment_id 9 ; Query gi|350396509|ref|XP_003484577.1| ; Align 217154 10 732 ; Align 217886 255 36 ; Align 219154 268 96 ; Align 219326 300 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 402 Query range: 2 -> 269 Target range: 221336 -> 222134 3 : GluSerThrIleIleLysThrAspAlaLysSerHisSerAspTyrSerLeuGlnLeuA : 22 ...|||||| !:!!:!! !||| !|||!!!:!! ! ! ! |||:!!||||||! SerSerThrArgValGluTyrAspTyrLysThrAsnValLysLeuSerValGlnLeuS 221337 : TCTTCGACTCGTGTTGAATACGATTACAAGACGAACGTGAAATTGAGCGTGCAATTGA : 221394 23 : snArgTrpPheLeuLysProIleGlyAlaTrpProTyrPheSerThrThrSerThrLe : 41 :!||||||.!!|||||||||||||||!.!|||||| !!! :!!!.!! !||||||:! erArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaAsnIleSerThrVa 221395 : GCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGT : 221451 42 : uGluLysValIleSerValSerLeuIleIleLeuCysTyrValValIleLeuPheSer : 60 !|||!:! !:!!! ! ! !:!!! !:!!:!!|||||| !:!!||| !||| ! lGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLeuIleThrPheLeu 221452 : AGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTC : 221508 61 : IleIleProCysValAlaHisLeuIlePheGluAspAspSerPheTyrArgLysValL : 80 :!::!!|||||| ! !:!!:!!|||.!!|||! !!:..! !!|||!.!!:!:!!| LeuValProCysSerLeuTyrValIleLeuGluValGluAspValTyrAsnArgIleL 221509 : TTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCA : 221568 81 : ysValPheGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrAsnLeuLe : 99 ||:!!!!.|||||||||.!! !!! ! !!:!.! !:!!!!.||| ! |||:! ysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIl 221569 : AATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGAT : 221625 100 : uPheArgSerArgAsnIleSerAspCysValGluHisIleGluThrAspTrpGlnIle : 118 !.!! !..!!.!:!!||| !!!!:|||:!!|||!.!|||||| !||||||:!!! ! eLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTrpAspTrpLysAsn 221626 : ACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAAT : 221682 119 : ValThrLysGluLysGlnGlnGlnValMetLeuLysHisAlaLysPheGlyArgTyrV : 138 :!!||| ! ...|||.!.:!!.!.:!!|||:!!:!!:!!|||! ||||||||| : IleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgL 221683 : ATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGAT : 221742 139 : alSerAlaIleCysAlaIlePheValHisSerGlyIleMetSerTyrCysIleValSe : 157 !!! ! !||||||.!!.!!|||:!!:!!||||||...::: ||| |||!.!! euIleMetIleCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIl 221743 : TGATCATGATCTGCACATTTTTCATGTACAGTggtttcgttttttattacatAGCCAT : 221799 158 : rAlaSerSerThrGlnIleIleLysValGlyAsnGluThrArgMetMetArgSerLeu : 176 ! !!! !|||..! ! !||| !.! !:!! ... ... !!:!! eProPheSerValGlyLysIleProAlaGlnAspValAsnValThrPheIleProMet 221800 : ACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATG : 221856 177 : ProLeuGlyValTyrAsnArgMetIleProValAspThrSerProAlaAsnGluIleV : 196 !!!! ! !!! !.. !!!::!! !..! !||||||!.!|||||||||: ValPheProPheSerArgPheIleValAspThrArgTyrSerProValAsnGluIleL 221857 : GTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTC : 221916 197 : alLeuValMetGlnPheLeuSerAlaPheIleThrAspSerSerGlyIleGlyPheTy : 215 !!!!! !:!:|||.!!:!!:!!!.! !:!:! ! !!|||! ! ! !.! !! euPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCy 221917 : TGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTG : 221973 216 : rThrLeuAlaSerValLeuAlaAlaHisAlaCysGlyGlnLeuSerValLeuThrIle : 234 !!:!|||!.!:!!:!!!!!|||!.!|||||||||||||||:!!..!||||||! !! ! sSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSer 221974 : CAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGC : 222030 235 : TrpIleSerAspTyrValAsnGluAlaGlyAsnArgLysGluAspAlaSerPheArgL : 254 |||:!:!.! !!! :!!|||! !!.!:!!! ! .!.:!!!.!..! |||! TrpLeuLysHisLeuIleAsnGlyArgAlaAspMetCysAsnAsnValAsp---ArgA 222031 : TGGCTGAAACATTTGATCAACGGCCGGGCGGATATGTGTAACAACGTGGAT---AGGA : 222087 255 : ysIleGlyThrIleValGluHisHisLeuArgThrLeuAspPheIle : 269 :!|||!.!! !||||||.!.!!.|||:!!|||! !|||.!.!:!:!! rgIleAlaLysIleValAsnGlnHisValArgIleLeuGlnTyrVal 222088 : GAATAGCGAAGATTGTGAATCAACACGTTCGAATATTGCAGTATGTA : 222134 vulgar: gi|350396509|ref|XP_003484577.1| 2 269 . KQ414889.1 221336 222134 + 402 M 249 747 G 1 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221337 222134 402 + . gene_id 10 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221337 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221337 222134 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221337 222134 402 + . alignment_id 10 ; Query gi|350396509|ref|XP_003484577.1| ; Align 221337 3 747 ; Align 222084 253 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 355 Query range: 300 -> 405 Target range: 272836 -> 273302 301 : GluTrpSerAspHisAspValArgSerLeuThrSerTyrPheIleIlePheAlaSerV : 320 ||||||!!!||||||||| !!!:!|||||||||!!!||||||!!:|||.!! !|||: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 321 : alThrPheAsnThrPheLeuLeuCysTyrIleGlyGluLeuLeuThrGluGln >>> : 338 !:||||||||| |||:::::!|||||||||||||||:!!|||||||||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 339 : > Target Intron 1 >>>> CysMetLysValGlyGluIleValTyrMetThrA : 349 70 bp ||| |||:::||||||:!!||||||||||||| ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 350 : snTrpTyrIleLeuProArgLysArgIleLeuGluLeuIleLeuIleIleAlaArgSe : 368 |||||||| !|||||| !!||| !||||||!!:|||||||||||||||:!!|||!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 369 : rSerValValIleGluIleThrAlaGlyLysLeuIleHisMetSerIleHisThrPhe : 387 !||||||||||||:!!||||||||||||!:!:!!:!!! !||||||:!::!!|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 388 : GlyAsp >>>> Target Intron 2 >>>> ValMetArgLeuAlaPheAlaTy : 397 |||||| 81 bp ||||||!:! !||||||||||| GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 398 : rLeuAsnIleLeuCysGlnMetThr : 405 |||||||!!:||| ! |||! !||| rLeuAsnMetLeuArgGlnThrThr 273277 : CTTAAATATGCTACGACAAACGACA : 273302 vulgar: gi|350396509|ref|XP_003484577.1| 300 405 . KQ414889.1 272836 273302 + 355 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273302 355 + . gene_id 11 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273302 355 + . alignment_id 11 ; Query gi|350396509|ref|XP_003484577.1| ; Align 272837 301 111 ; Align 273018 338 156 ; Align 273255 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 348 Query range: 3 -> 272 Target range: 226891 -> 227695 4 : SerThrIleIleLysThrAspAlaLysSerHisSerAspTyrSerLeuGlnLeuAsnA : 23 ||| ! ! !:!!!.!||| !:!!..!:!!! !:!! |||:!!|||||||||| SerLeuAlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnA 226892 : TCTCTCGCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATC : 226949 24 : rgTrpPheLeuLysProIleGlyAlaTrpProTyrPheSerThrThrSerThrLeuGl : 42 |||||.!.|||||||||:!!||| !||||||! ! !!! !!:!||| !:!!! rgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGl 226950 : GTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGG : 227006 43 : uLysValIleSerValSerLeuIleIleLeuCysTyrValValIleLeuPheSerIle : 61 !!:! !.!!||| !! !:!! !.!!|||||||||!.!:!!!!: !|||..!:!: yArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeu 227007 : AAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTG : 227063 62 : IleProCysValAlaHisLeuIlePheGluAspAspSerPheTyrArgLysValLysV : 81 :!! !! !!! ! !:!!:!!:!!.!.|||! ! .!! !|||!.!! !:!!|||: ValSerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysM 227064 : GTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAA : 227123 82 : alPheGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrAsnLeuLeuPh : 100 !!.!!||||||:!!..! !!:: !!:..! !:!!!!.|||:!!! ||| !|| etIleGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPh 227124 : TGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTT : 227180 101 : eArgSerArgAsnIleSerAspCysValGluHisIleGluThrAspTrpGlnIleVal : 119 |!.!..! !:!!||| !!!:|||||||||!..|||:!! !||||||:!!! !:!! eHisGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIle 227181 : CCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATC : 227237 120 : ThrLysGluLysGlnGlnGlnValMetLeuLysHisAlaLysPheGlyArgTyrValS : 139 ! ! ! !:!!.!.::!.!.||||||:!!! !:!!||| ! !:!|||||| ! :!!! ArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuI 227238 : AGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGA : 227297 140 : erAlaIleCysAlaIlePheValHisSerGlyIleMetSerTyrCysIleValSerAl : 158 !.!!||||||.!!.!!|||||| !|||......::: ::: |||||| ! ! leThrIleCysThrPhePheValPheSerSerPheValPhePheTyrIleValValPr 227298 : TCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACC : 227354 159 : aSerSerThrGlnIleIleLysValGlyAsnGluThrArgMetMetArgSerLeuPro : 177 !! !!:!.!! !! !:!! !..!! !:!!! !!.!!.!! ! !..!:!!||| oIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetPro 227355 : TATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCG : 227411 178 : LeuGlyValTyrAsnArgMetIleProValAspThrSerProAlaAsnGluIleValL : 197 !!! ! !! !!.! !!!: ! !||| ! !|||||| !||||||||| !!! PheProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIlePheP 227412 : TTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCT : 227471 198 : euValMetGlnPheLeuSerAlaPheIleThrAspSerSerGlyIleGlyPheTyrTh : 216 !! !:!:||||||:!!!!!!.!.!!:!: ! !!.!! ! ! !!.! !! !!: heSerValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSe 227472 : TTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAG : 227528 217 : rLeuAlaSerValLeuAlaAlaHisAlaCysGlyGlnLeuSerValLeuThrIleTrp : 235 !:!!|||:!!:!!||||||!.!|||||||||||||||:!!..!||||||..! !||| rMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrp 227529 : TATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGG : 227585 236 : IleSerAspTyrValAsnGluAlaGlyAsnArgLysGluAspAlaSerPheArgLysI : 255 :!:.!! !!! :!!:!!! !!.!:!!! !!..:!! !..! !||| | LeuGlyHisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAspAspArg---I 227586 : CTGGGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGATGATAGA---A : 227642 256 : leGlyThrIleValGluHisHisLeuArgThrLeuAspPheIleAlaArgIle : 272 ||!.!!:!|||||| ||||||:!!|||! !||| ! ! !:!!.!! !!||| leAlaSerIleValThrHisHisValArgIleLeuLysCysValThrCysIle 227643 : TCGCTAGCATCGTCACTCACCACGTTCGAATATTGAAGTGTGTAACGTGTATC : 227695 vulgar: gi|350396509|ref|XP_003484577.1| 3 272 . KQ414889.1 226891 227695 + 348 M 250 750 G 1 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226892 227695 348 + . gene_id 12 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226892 227695 . + . KQ414889.1 exonerate:protein2genome:local exon 226892 227695 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226892 227695 348 + . alignment_id 12 ; Query gi|350396509|ref|XP_003484577.1| ; Align 226892 4 750 ; Align 227642 255 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 348 Query range: 16 -> 266 Target range: 284523 -> 285285 17 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProTyrPheS : 36 ||||||:!!|||:!!|||||||||||||||||||||||||||!.!|||||| ! ! TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 37 : erThrThrSerThrLeuGluLysValIleSerValSerLeuIleIleLeuCysTyrVa : 55 ! !..!!!!||||||||||||:!!! !|||||| !||| :!!:!! !!! ! ! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 56 : lValIleLeuPheSerIleIleProCys<->ValAlaHisLeuIlePheGluAspAsp : 73 !:!!||| !||| !:!::!!|||||| :!!..! :!!:!! !:!! !! ! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 74 : SerPheTyrArgLysValLysValPheGlyProLeuGlyHisTrpPheIleGlyGlyI : 93 ..!.!! !!! !|||:!!|||:!!.!!|||||||||.!! !!! .!.!!:!.!!.!| AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 94 : leAsnTyrThrAsnLeuLeuPheArgSerArgAsnIleSerAspCysValGluHisIl : 112 ||!!.||| !! !|||:!!! |||.!! !!!!.|||.!!.!.||||||:!! !!|| leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 113 : eGluThrAspTrpGlnIleVal<-><-><->ThrLysGluLysGlnGlnGlnValMet : 128 |....!!||||||...:!!..! !:::::|||:::::::::::::::||| eArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMet 284813 : TCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTG : 284869 129 : LeuLysHisAlaLysPheGlyArgTyrValSerAlaIleCysAlaIlePheValHisS : 148 ! ! !|||!:!.!!||||||! !:!!:!! !.!!|||||| !|||:!!:!!| ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrS 284870 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATT : 284929 149 : erGlyIleMetSerTyrCysIleValSerAlaSerSerThrGlnIleIleLysValGl : 167 ||||| !.!.! !||| !! |||! ! !!! !!!!||| ! !! :!!:!! erGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIle-- 284930 : CCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATC-- : 284986 168 : yAsnGluThrArgMetMetArgSerLeuProLeuGlyValTyrAsnArgMetIlePro : 186 ! !!!:!.!..!! :!!||||||! ! !!!!! !:!!|||..! !!:!::!! ! -IleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAsp 284987 : -ATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGAT : 285040 187 : ValAspThrSerProAlaAsnGluIleValLeuValMetGlnPheLeuSerAlaPheI : 206 ! !|||||||||:!! !|||||||||! ! !!||||||! !|||:!!||||||: ProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheV 285041 : CCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCG : 285100 207 : leThrAspSerSerGlyIleGlyPheTyrThrLeuAlaSerValLeuAlaAlaHisAl : 225 !!! ! !!||| ! !:!!||| !! !!:!||||||:!!|||!!!!.! !|||!. alIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisVa 285101 : TTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGT : 285157 226 : aCysGlyGlnLeuSerValLeuThrIleTrpIleSerAspTyrValAsnGluAlaGly : 244 !|||||||||!!!!!!:!!|||..!! ! !:!:..! ! !|||:!!! !!.! ! lCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLys 285158 : CTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAA : 285214 245 : AsnArgLysGluAspAlaSerPhe<->ArgLysIleGlyThrIleValGluHisHisL : 263 ...||||||! ! ::!!!! ! !:!::!:!:||| !|||:!!|||||||||| GlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisL 285215 : GGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATC : 285274 264 : euArgThrLeu : 266 ||!:!! !||| euLysIleLeu 285275 : TGAAGATACTG : 285285 vulgar: gi|350396509|ref|XP_003484577.1| 16 266 . KQ414889.1 284523 285285 + 348 M 48 144 G 0 3 M 55 165 G 0 9 M 47 141 G 1 0 M 85 255 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 285285 348 + . gene_id 13 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284524 285285 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 285285 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284524 285285 348 + . alignment_id 13 ; Query gi|350396509|ref|XP_003484577.1| ; Align 284524 17 144 ; Align 284671 65 165 ; Align 284845 120 141 ; Align 284986 168 255 ; Align 285244 253 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 346 Query range: 300 -> 405 Target range: 254071 -> 254567 301 : GluTrpSerAspHisAspValArgSerLeuThrSerTyrPheIleIlePheAlaSerV : 320 ||||||!!!!!: !|||!.!!:!! !||| !!!!|||.!!:!!! !.!!!.!:!!| GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaV 254072 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTG : 254129 321 : alThrPheAsnThrPheLeuLeuCysTyrIleGlyGluLeuLeuThrGluGln >>> : 338 ||..! ||||||||||||:::|||||||||.!!!!: !|||||||||||| alValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 254130 : TTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt... : 254185 339 : > Target Intron 1 >>>> CysMetLysValGlyGluIleValTyrMetThrA : 349 92 bp |||:!!||||||||||||:!:||||||||||||: ++CysLeuLysValGlyGluValValTyrMetThrA 254186 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 254308 350 : snTrpTyrIleLeuProArgLysArgIleLeuGluLeuIleLeuIleIleAlaArgSe : 368 !!|||||| !||||||!:!!:!|||||||||!!:|||||||||||||||.!!||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSe 254309 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATC : 254365 369 : rSerValValIleGluIleThrAlaGlyLysLeuIleHisMetSerIleHisThrPhe : 387 |!:!||||||:!!||||||||||||||||||:::...|||||||||:!!:!!|||||| rAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPhe 254366 : GAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTC : 254422 388 : GlyAsp >>>> Target Intron 2 >>>> ValMetArgLeuAlaPheAlaTy : 397 |||||| 89 bp |||:!:!:! !!.!|||||||| GlyAsp++ ++ValValLysThrGlyPheAlaTy 254423 : GGCGATgt.........................agGTAGTAAAAACAGGATTCGCCTA : 254541 398 : rLeuAsnIleLeuCysGlnMetThr : 405 |||||||!!:||||||||||||:!! rLeuAsnMetLeuCysGlnMetSer 254542 : CTTGAATATGCTTTGTCAAATGTCC : 254567 vulgar: gi|350396509|ref|XP_003484577.1| 300 405 . KQ414889.1 254071 254567 + 346 M 37 111 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254072 254567 346 + . gene_id 14 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254072 254182 . + . KQ414889.1 exonerate:protein2genome:local exon 254072 254182 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254183 254184 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254183 254274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254273 254274 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254275 254430 . + . KQ414889.1 exonerate:protein2genome:local exon 254275 254430 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254431 254432 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254431 254519 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 254518 254519 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254520 254567 . + . KQ414889.1 exonerate:protein2genome:local exon 254520 254567 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254072 254567 346 + . alignment_id 14 ; Query gi|350396509|ref|XP_003484577.1| ; Align 254072 301 111 ; Align 254275 338 156 ; Align 254520 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 339 Query range: 5 -> 266 Target range: 208179 -> 208959 6 : IleIleLysThrAspAlaLysSerHisSerAspTyrSerLeuGlnLeuAsnArgTrpP : 25 .!!:!!!!.! !:!! !|||!:! !! !..!!:!!:!:!!!::|||||| !||| PheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpT 208180 : TTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGA : 208237 26 : heLeuLysProIleGlyAlaTrpProTyrPheSerThrThrSerThrLeuGluLysVa : 44 |||||| !||||||:!!|||||| ! !! ! ! !||| !||||||!!. hrLeuLysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSe 208238 : CGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAG : 208294 45 : lIleSerValSerLeuIleIleLeuCysTyrValValIleLeuPheSerIleIlePro : 63 ! !:!! !|||! !:!!||| !!:!! !:!!:!! !|||! !:!:|||||| rGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIlePro 208295 : CCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCG : 208351 64 : CysValAlaHisLeuIlePheGluAspAspSerPheTyrArgLysValLysValPheG : 83 !! ! ! ! !|||.!!! !! !!!:..!|||||| !:!!:!!|||:!!! !. ThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysS 208352 : ACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTA : 208411 84 : lyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrAsnLeuLeuPheArgSe : 102 !! !!|||.!! !!::.!.!!:!.! !! !!.|||..!! !:!! ! !!|||.. erAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGl 208412 : GCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGA : 208468 103 : rArgAsnIleSerAspCysValGluHisIleGluThrAspTrpGlnIleValThrLys : 121 ! !!:!!||| !! ! |||||||||:!!:!!|||.!!||||||::!! !||| ! ! uGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHis 208469 : GGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCAC : 208525 122 : GluLysGlnGlnGlnValMetLeuLysHisAlaLysPheGlyArgTyrValSerAlaI : 141 |||:!!.!.::!:!!:!!|||||| ! :!!|||!..|||!.!||| ! :!!! !!.!| GluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValI 208526 : GAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGA : 208585 142 : leCysAlaIlePheValHisSerGlyIleMetSerTyrCysIleValSerAlaSerSe : 160 |||||!.! !|||:!!:!!.!!|||:::::: ||| |||!.!! ! !! !!! leCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuTh 208586 : TATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCAC : 208642 161 : rThrGlnIleIleLysValGlyAsnGluThrArgMetMetArgSerLeuProLeuGly : 179 ! !.!.! :!! ! !! !..!! !.! !! ! |||!!!||| !! ! ! rArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrPro 208643 : TCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCT : 208699 180 : ValTyrAsnArgMetIleProValAspThrSerProAlaAsnGluIleValLeuValM : 199 ||| !!!. !!!::!: !||| !||||||!.!||||||||| !!! !..!: ValProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrV 208700 : GTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGG : 208759 200 : etGlnPheLeuSerAlaPheIleThrAspSerSerGlyIleGlyPheTyrThrLeuAl : 218 !:|||!!.||||||!.!|||:!!.!! !!!:!! ! !:!!||| !! ! !||||| alGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAl 208760 : TACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGC : 208816 219 : aSerValLeuAlaAlaHisAlaCysGlyGlnLeuSerValLeuThrIleTrpIleSer : 237 |:!!:!!|||||| !||||||||||||||||||..!:!!|||! ! !|||!!:..! aAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGlu 208817 : CGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAG : 208873 238 : AspTyrValAsnGluAlaGlyAsnArgLysGluAspAlaSerPheArgLysIleGlyT : 257 ! ! |||:!!! ! !! !:!!..!:!!:!!:!! !..! !:!!:!:!:!.!! LysLeuValAspGlyArgGluAspGluGluLysAsnLeuAsp---GlnArgLeuAlaA 208874 : AAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGAT---CAGAGGTTGGCTA : 208930 258 : hrIleValGluHisHisLeuArgThrLeu : 266 .!|||||||||!!.|||:!!|||..!:!! snIleValGluGlnHisValArgValIle 208931 : ATATCGTGGAGCAGCATGTTCGAGTGATC : 208959 vulgar: gi|350396509|ref|XP_003484577.1| 5 266 . KQ414889.1 208179 208959 + 339 M 246 738 G 1 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208180 208959 339 + . gene_id 15 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208180 208959 . + . KQ414889.1 exonerate:protein2genome:local exon 208180 208959 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208180 208959 339 + . alignment_id 15 ; Query gi|350396509|ref|XP_003484577.1| ; Align 208180 6 738 ; Align 208918 253 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 326 Query range: 16 -> 266 Target range: 278576 -> 279338 17 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProTyrPheS : 36 ||||||:!!|||:!!|||||||||||||||||||||||||||!.!|||||| ! ! TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 37 : erThrThrSerThrLeuGluLysValIleSerValSerLeuIleIleLeuCysTyrVa : 55 ! !..!!!!||||||||||||:!!! !|||||| !||| :!!:!! !!! ! ! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 56 : lValIleLeuPheSerIleIleProCys<->ValAlaHisLeuIlePheGluAspAsp : 73 !:!!||| !||| !:!::!!|||||| :!!..! :!!:!! !:!! !! ! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 74 : SerPheTyrArgLysValLysValPheGlyProLeuGlyHisTrpPheIleGlyGlyI : 93 ..!.!! !!! !|||:!!|||:!!.!!|||||||||.!! !!! !!:!.! !| AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 94 : leAsnTyrThrAsnLeuLeuPheArgSerArgAsnIleSerAspCysValGluHisIl : 112 ||!!.||| !! !|||:!!! |||.!! !!!!.|||.!! ! ||||||.!. !!|| leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 113 : eGluThrAspTrpGlnIleVal<-><-><->ThrLysGluLysGlnGlnGlnValMet : 128 |...|||||||||...:!!..! :::|||:::::::::::::::||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 129 : LeuLysHisAlaLysPheGlyArgTyrValSerAlaIleCysAlaIlePheValHisS : 148 ! ! !|||!:!.!!||||||! !:!!:!! !.!! !!||| !|||:!!:!!| ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 149 : erGlyIleMetSerTyrCysIleValSerAlaSerSerThrGlnIleIleLysValGl : 167 ||||| !:!:! !||| ! !|||! ! !!! !! !.!! ! !! :!!:!! erGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIle-- 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATC-- : 279039 168 : yAsnGluThrArgMetMetArgSerLeuProLeuGlyValTyrAsnArgMetIlePro : 186 ! !!!:!.!..!! !:!!||||||! ! !!!!! !:!!|||..! !!:!::!! ! -IleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAsp 279040 : -ATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGAT : 279093 187 : ValAspThrSerProAlaAsnGluIleValLeuValMetGlnPheLeuSerAlaPheI : 206 ! !|||||||||:!! !|||||||||! ! !!||||||! !|||:!!||||||: ProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheV 279094 : CCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCG : 279153 207 : leThrAspSerSerGlyIleGlyPheTyrThrLeuAlaSerValLeuAlaAlaHisAl : 225 !! ! !!||| ! !:!!||| !! !!:!||| !:!!|||!!!!.! !|||!. alLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisVa 279154 : TTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGT : 279210 226 : aCysGlyGlnLeuSerValLeuThrIleTrpIleSerAspTyrValAsnGluAlaGly : 244 !|||||||||!!!!!!:!!|||..!! ! !:!:..! ! !:!!:!!! !!.! ! lCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLys 279211 : CTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAA : 279267 245 : AsnArgLysGluAspAlaSerPhe<->ArgLysIleGlyThrIleValGluHisHisL : 263 ...||||||... ::!!!! ! !:!::!:!:||| !|||:!!|||||||||| GlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisL 279268 : GGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATC : 279327 264 : euArgThrLeu : 266 ||!:!! !||| euLysIleLeu 279328 : TGAAGATACTG : 279338 vulgar: gi|350396509|ref|XP_003484577.1| 16 266 . KQ414889.1 278576 279338 + 326 M 48 144 G 0 3 M 55 165 G 0 9 M 47 141 G 1 0 M 85 255 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 279338 326 + . gene_id 16 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278577 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279338 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278577 279338 326 + . alignment_id 16 ; Query gi|350396509|ref|XP_003484577.1| ; Align 278577 17 144 ; Align 278724 65 165 ; Align 278898 120 141 ; Align 279039 168 255 ; Align 279297 253 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 312 Query range: 16 -> 266 Target range: 289735 -> 290479 17 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProTyr<->P : 35 |||!!!!!!:!!||| !!.!|||.!!||||||||||||||| !!::|||!:! | TyrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrProPheValP 289736 : TACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCT : 289793 36 : heSerThrThrSerThrLeuGluLysValIleSerValSerLeuIleIleLeuCysTy : 54 ||||| !.!!|||! !! !|||::!..! ||||||! !||||||:!::!!|||! heSerArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLeuValCysCy 289794 : TTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTG : 289850 55 : rValValIleLeuPheSerIleIleProCysValAlaHisLeuIlePheGluAspAsp : 73 ! !:!!:!!! !|||! !|||:!!|||! ! ! !|||:!!:!!|||...|||:!! sSerIleLeuGlnPheIleIleValProPheSerHisHisValLeuPheSerAspAsn 289851 : CTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAAC : 289907 74 : SerPheTyrArgLysValLysValPheGlyProLeuGlyHisTrpPheIleGlyGlyI : 93 ..!.!. !!! ! |||||| !.!!||||||||| ! !!! !!.! ! ! !. AspMetAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuThrThrPheP 289908 : GACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCT : 289967 94 : leAsnTyrThrAsnLeuLeuPheArgSerArgAsnIleSerAspCysValGluHisIl : 112 !!!!.||| ! !!!!! !.!.!:!.!! ! |||.!! !||||||:!!||||| heLysTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysValLysHisIl 289968 : TCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACAT : 290024 113 : eGluThrAspTrpGlnIleValThrLysGluLysGlnGlnGlnValMetLeuLysHis : 131 ||||! !||||||:!!!!::!! ! ! ||| ! !!.!:: :!!||||||!:!:!! eGluArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMetLeuArgTyr 290025 : CGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATAC : 290081 132 : AlaLysPheGlyArgTyrValSerAlaIleCysAlaIlePheValHisSerGlyIleM : 151 !.!! !.!..!!||| !!:!!! ! !:!:||||||||||||:!!:!!! !||| !: ValThrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyL 290082 : GTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTC : 290141 152 : etSerTyrCysIleValSerAlaSerSerThrGlnIleIleLysValGlyAsnGluTh : 170 !!|||||| !! !|||! ! !!! !! !:!!:!!! ! ! ! !||||||! !|| euSerTyrAsnThrValIleProLeuPheSerLysLysSerValAsnGlyAsnValTh 290142 : TGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGGTAACGTGAC : 290198 171 : rArgMetMetArgSerLeuProLeuGlyValTyrAsnArgMetIleProValAspThr : 189 | !!:||| !!||| !!! ! !! !|||.!...!.!..!! !|||.!.! ! r------IleArgProLeuThrTyrProGlyTyrGluGluPhePheAspValGlnLys 290199 : T------ATCAGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAG : 290249 190 : SerProAlaAsnGluIleValLeuValMetGlnPheLeuSerAlaPheIleThrAspS : 209 ||||||||| !!|||||||||!!! !|||!!.! !:!!! !!.!.!.||||||! ! SerProAlaTyrGluIleValPheCysMetHisCysValTyrValMetIleThrAlaA 290250 : AGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGA : 290309 210 : erSerGlyIleGlyPheTyrThrLeuAlaSerValLeuAlaAlaHisAlaCysGlyGl : 228 :!! ! !!!:!.! |||!:!|||.!!!!!:!!!!!|||.!!|||.!!|||||||| snIleThrMetAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGl 290310 : ACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCA : 290366 229 : nLeuSerValLeuThrIleTrpIleSerAspTyrValAsnGluAlaGlyAsnArgLys : 247 |:!!!.!:!!! !|||! !!:!:..!||| :!!!..:!! !|||! ! ! ! nIleLysIleGlnThrThrArgLeuGluAsp---LeuThrLysArgGlyMetLeuLeu 290367 : GATTAAGATACAAACGACGCGGCTGGAGGAT---CTGACAAAGAGAGGGATGCTGTTG : 290420 248 : GluAspAlaSerPheArgLysIleGlyThrIleValGluHisHisLeuArgThrLeu : 266 ||| ! !.! ! ! !::::!:!.!..!:!!|||... !|||:!!..!! !||| GluLysGlyValSerAspArgLeuAlaValValValSerGlyHisValGluIleLeu 290421 : GAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTGTGAGCGGTCACGTGGAGATCTTG : 290479 vulgar: gi|350396509|ref|XP_003484577.1| 16 266 . KQ414889.1 289735 290479 + 312 M 18 54 G 0 3 M 136 408 G 2 0 M 66 198 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289736 290479 312 + . gene_id 17 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289736 290479 . + . KQ414889.1 exonerate:protein2genome:local exon 289736 290479 . + . insertions 3 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 289736 290479 312 + . alignment_id 17 ; Query gi|350396509|ref|XP_003484577.1| ; Align 289736 17 54 ; Align 289793 35 408 ; Align 290201 173 198 ; Align 290399 240 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 233 Query range: 278 -> 400 Target range: 280025 -> 280465 279 : ValCysMetThrGluLeuPheArgCysValLeuAlaIleCysMetValGlyTyrTyrI : 298 :!!||| !.!.:!! ! ! !... !:!!|||.!! !||| !..!! ! : LeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerLeuSerV 280026 : TTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGTTGTCAG : 280083 299 : leValThrGluTrpSerAspHisAspValArgSerLeuThrSerTyrPheIleIlePh : 317 !! !! !||||||..!.!.:!!|||!.!! !.!! ! !!!!|||!!.!!:.!!.! alPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLe 280084 : TTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCT : 280140 318 : eAlaSerValThrPheAsnThrPheLeuLeuCysTyrIleGlyGluLeuLeuThrGlu : 336 ! !|||:!!|||||||||..!|||:!!||||||||||||||||||:!!|||:!!||| uIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGlu 280141 : CATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAA : 280197 337 : Gln >>>> Target Intron 1 >>>> CysMetLysValGlyGluIleValTy : 346 ||| 74 bp |||:!:|||||||||! ! !..!|| Gln++ ++CysLeuLysValGlyValSerThrTy 280198 : Caggt.........................agTGCTTAAAAGTCGGCGTGTCAACTTA : 280301 347 : rMetThrAsnTrpTyrIleLeuProArgLysArgIleLeuGluLeuIleLeuIleIle : 365 ||||! !:!!|||||| !|||||| !!|||!:! !! !! ||||||||||||.!! rMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePhe 280302 : CATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTC : 280358 366 : AlaArgSerSerValValIleGluIleThrAlaGlyLysLeuIleHisMetSerIleH : 385 ||| !|||!:! ! !|||:!!:!!||||||||||||:!!||| !!:!:|||:!! AlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuS 280359 : GCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAA : 280418 386 : isThrPheGlyAspValMetArgLeuAlaPheAlaTyrLeuAsnIle : 400 !!:!||| !!..!|||! ! !:!! !!!.:!!|||! !:!!:!: erSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280419 : GCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: gi|350396509|ref|XP_003484577.1| 278 400 . KQ414889.1 280025 280465 + 233 M 59 177 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280026 280465 233 + . gene_id 18 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280026 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280026 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280026 280465 233 + . alignment_id 18 ; Query gi|350396509|ref|XP_003484577.1| ; Align 280026 279 177 ; Align 280277 338 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 228 Query range: 296 -> 401 Target range: 305088 -> 305816 297 : TyrIleValThrGluTrpSerAspHisAspValArgSerLeuThrSerTyrPheIleI : 316 |||::: !!!:|||..!..! !:!!..! !|||||||||!!!||| :!:: TyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValL 305089 : tatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGT : 305146 317 : lePheAlaSerValThrPheAsnThrPheLeuLeuCysTyrIleGlyGluLeuLeuTh : 335 !!.!. !|||||||||||||||! !|||:!!||||||||||||||||||:!!|||! euLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMe 305147 : TACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTAT : 305203 336 : rGluGln >>>> Target Intron 1 >>>> CysMetLysValGlyGluIleV : 345 !|||:!! 413 bp !!! !..|||||| ! ! tGluLys++ ++SerSerSerValGlyLeuSerC 305204 : GGAAAAGgt.........................agAGCAGTAGCGTTGGATTATCCT : 305646 346 : alTyrMetThrAsnTrpTyrIleLeuProArgLysArgIleLeuGluLeuIleLeuIl : 364 !!:!|||! !!:!|||||| !||||||! !|||! !|||! !! ||||||||||| ysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleLeuIl 305647 : GTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTTTAAT : 305703 365 : eIleAlaArgSerSerValValIleGluIleThrAlaGlyLysLeuIleHisMetSer : 383 |||||||! !|||||| ! ! !:!!|||!:!|||||||||:!!:!! !!:!:||| eIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysValValAspLeuSer 305704 : CATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTATCT : 305760 384 : IleHisThrPheGlyAspValMetArgLeuAlaPheAlaTyrLeuAsnIleLeu : 401 :!! !|||||||||:!!|||! !! ! :::::: ::::::|||::: LeuSerThrPheGlyAsnValSerTyrTyrGlnTyrSerAsnIleSerIleVal 305761 : TTATCCACATTTGGAAACGTGAGTTACTATcaatattccaatatttcaattgtt : 305816 vulgar: gi|350396509|ref|XP_003484577.1| 296 401 . KQ414889.1 305088 305816 + 228 M 41 123 5 0 2 I 0 409 3 0 2 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305089 305816 228 + . gene_id 19 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305089 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305089 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305816 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305816 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305089 305816 228 + . alignment_id 19 ; Query gi|350396509|ref|XP_003484577.1| ; Align 305089 297 123 ; Align 305625 338 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 224 Query range: 336 -> 390 Target range: 244655 -> 244817 337 : GlnCysMetLysValGlyGluIleValTyrMetThrAsnTrpTyrIleLeuProArgL : 356 ||||||:!!||||||||||||:!:||||||||||||:!!|||||| !||||||!:!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 357 : ysArgIleLeuGluLeuIleLeuIleIleAlaArgSerSerValValIleGluIleTh : 375 :!|||||||||!!:||||||||||||||| !||||||!:!:!!|||:!!|||||||| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 376 : rAlaGlyLysLeuIleHisMetSerIleHisThrPheGlyAspVal : 390 ||||||||||:!!:!!|||||||||:!!:!!||||||||||||||| rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspVal 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTA : 244817 vulgar: gi|350396509|ref|XP_003484577.1| 336 390 . KQ414889.1 244655 244817 + 224 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244817 224 + . gene_id 20 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244817 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244817 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244817 224 + . alignment_id 20 ; Query gi|350396509|ref|XP_003484577.1| ; Align 244656 337 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 224 Query range: 16 -> 266 Target range: 303196 -> 304866 17 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProTyrPheS : 36 ||| ! !:!!! !!:!!:!|||.!!|||||| !!:!!||| !|||||| : TyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTrpPro------A 303197 : TACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTGGCCA------G : 303248 37 : erThrThrSerThrLeuGluLysValIleSerValSerLeuIleIleLeuCysTyrVa : 55 !!..! !..! ! !! ! ! !!:!! !! !! ! !||| !||| !! !!:! laValLeuAspGluThrAlaGlyPheLeuProLysIleThrIleGlyLeuSerAsnLe 303249 : CCGTGTTGGACGAAACCGCAGGATTCCTACCAAAAATCACCATTGGACTCAGTAATTT : 303305 56 : lValIleLeuPheSerIleIleProCysValAlaHisLeuIlePheGluAspAspSer : 74 !|||:!!||||||!!!:!:|||||||||:!! !|||:!!|||||||||.!. ! ..! uValLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnLysAsp 303306 : GGTTCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAAAGGAT : 303362 75 : PheTyrArgLysValLysValPheGlyProLeuGlyHisTrpPheIleGlyGly{Il} : 93 ! !!:!:!!|||:!!||||||! !|||.!! !!! !!.|||..! !{||} ThrIleIleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLeu{Il} 303363 : ACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTTG{AT} : 303419 94 : >>>> Target Intron 1 >>>> {e}AsnTyrThrAsnLeuLeuPheArgSe : 102 938 bp {|}.!.|||:!!! ||| ::: +- -+{e}GlnTyrSerIleLeuProCysLysLe 303420 : ga.........................cg{A}CAATATTCTATACTTccttgcaaatt : 304384 103 : rArgAsnIleSerAspCysValGluHisIleGluThrAspTrpGlnIleValThrLys : 121 :::...::: ! ! ! !! ! !!:!!...|||! !:::!! ||| !... uLysArgLeuValPheArg***GlyAspLeuSerThrGlyTyrGluGlnValGluSer 304385 : aaaacgtttaGTGTTTCGATAAGGGGATCTCTCTACTGGATATGAACAGGTGGAATCT : 304441 122 : GluLysGlnGlnGlnValMetLeuLysHisAlaLysPheGlyArgTyrValSerAlaI : 141 !:!.!.!:::!!:!!|||||||||:!!!.!:!!.!.|||||| !!:!!!!! !| LeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleI 304442 : CTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAA : 304501 142 : leCysAlaIlePheValHisSerGlyIleMetSerTyrCysIleValSerAlaSerSe : 160 ||||||||||||||:!!:!!!!!||| !! ! !||| !! |||! ! !! !:! leCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheAl 304502 : TCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGC : 304558 161 : rThrGlnIleIleLysValGlyAsnGluThrArgMetMetArgSerLeuProLeuGly : 179 !||| !! ! |||! !.!. ! !.!|||! !!!:!:! !!||| !! ! ! aThrGlyThrTyr---ValAspGluTyrAsnArgThrIleLysProLeuValTyrPro 304559 : GACCGGAACGTAT---GTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCC : 304612 180 : ValTyrAsnArgMetIleProValAspThrSerProAlaAsnGluIleValLeuValM : 199 ..!|||!:! !:!:.!! !|||.!.||||||||| ! !!|||:!:|||! ! !!: ThrTyrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheV 304613 : ACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCG : 304672 200 : etGlnPheLeuSerAlaPheIleThrAspSerSerGlyIleGlyPheTyrThrLeuAl : 218 !:!!.! !:!!!!!!.!!:!:!!! ! !!|||! ! ! !||| !! ! !||||| alHisCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAl 304673 : TTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGC : 304729 219 : aSerValLeuAlaAlaHisAlaCysGlyGlnLeuSerValLeuThrIleTrpIleSer : 237 |:!!:!!!!!|||.!!|||||||||||||||:!!..!:!!:!!! ! ! ! :!:.!! aAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGly 304730 : CGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGT : 304786 238 : AspTyrValAsnGluAlaGlyAsnArgLysGluAspAlaSerPheArgLysIleGlyT : 257 ||| !||||||... !! !::: ! ! !||| !:!::!:!! ! AspLeuValAsnSerLysGluSerSerAspLeuAsp---------LysArgLeuIleG 304787 : GATCTTGTCAACAGCAAAGAATCATCTGATTTAGAT---------AAACGATTAATAG : 304837 258 : hrIleValGluHisHisLeuArgThrLeu : 266 !|||||||||||||||||||||! !||| luIleValGluHisHisLeuArgIleLeu 304838 : AAATTGTTGAGCATCATTTGCGAATTTTA : 304866 vulgar: gi|350396509|ref|XP_003484577.1| 16 266 . KQ414889.1 303196 304866 + 224 M 17 51 G 2 0 M 57 171 S 0 2 5 0 2 I 0 934 3 0 2 S 1 1 M 71 213 G 1 0 M 84 252 G 3 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303197 304866 224 + . gene_id 21 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303197 303420 . + . KQ414889.1 exonerate:protein2genome:local exon 303197 303420 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 303421 303422 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 303421 304358 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304357 304358 . + . intron_id 0 ; splice_site "CG" KQ414889.1 exonerate:protein2genome:local cds 304359 304866 . + . KQ414889.1 exonerate:protein2genome:local exon 304359 304866 . + . insertions 0 ; deletions 4 KQ414889.1 exonerate:protein2genome:local similarity 303197 304866 224 + . alignment_id 21 ; Query gi|350396509|ref|XP_003484577.1| ; Align 303197 17 51 ; Align 303248 36 171 ; Align 304360 94 213 ; Align 304573 166 252 ; Align 304825 253 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 222 Query range: 335 -> 395 Target range: 277548 -> 277728 336 : GluGlnCysMetLysValGlyGluIleValTyrMetThrAsnTrpTyrIleLeuProA : 355 ..!||||||! ||||||||||||:!:||||||||||||||||||||| !|||||| ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 356 : rgLysArgIleLeuGluLeuIleLeuIleIleAlaArgSerSerValValIleGluIl : 374 !||| !||||||.!.|||:!!|||||||||:!!|||||||||:::||||||:::|| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 375 : eThrAlaGlyLysLeuIleHisMetSerIleHisThrPheGlyAspValMetArgLeu : 393 |||||||||||||||||||...||||||:!::!!||||||||||||||| !||| eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspValArgSerLeu 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTACGTTCACTT : 277720 394 : AlaPhe : 395 !||| LeuPhe 277721 : CTTTTT : 277728 vulgar: gi|350396509|ref|XP_003484577.1| 335 395 . KQ414889.1 277548 277728 + 222 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277728 222 + . gene_id 22 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277549 277728 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277728 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277728 222 + . alignment_id 22 ; Query gi|350396509|ref|XP_003484577.1| ; Align 277549 336 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 220 Query range: 278 -> 400 Target range: 286812 -> 287252 279 : ValCysMetThrGluLeuPheArgCysValLeuAlaIleCysMetValGlyTyrTyrI : 298 :!!||| !.!. ! ! ! !...:!!:!!|||.!! !||| !..!! ! : LeuCysTyrTyrHisThrValMetAlaIleIleAlaPheValMetTyrSerLeuSerV 286813 : TTGTGTTATTACCATACTGTAATGGCAATAATTGCATTCGTCATGTACTCGTTGTCAG : 286870 299 : leValThrGluTrpSerAspHisAspValArgSerLeuThrSerTyrPheIleIlePh : 317 !! !! !||||||..!.!. !!!:..!! !.!! !! !!!!|||! !! :!:.! alPhe***GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLe 286871 : TTTTCTAGGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCT : 286927 318 : eAlaSerValThrPheAsnThrPheLeuLeuCysTyrIleGlyGluLeuLeuThrGlu : 336 .!.!||| !!|||||||||..!|||:!!||||||||||||||||||:!!|||:!!||| uValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGlu 286928 : GGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAA : 286984 337 : Gln >>>> Target Intron 1 >>>> CysMetLysValGlyGluIleValTy : 346 ||| 74 bp |||:!:||||||||| ! !..!|| Gln++ ++CysLeuLysValGlyLeuSerThrTy 286985 : Caggt.........................agtGCTTAAAAGTCGGCTTGTCAACTTA : 287088 347 : rMetThrAsnTrpTyrIleLeuProArgLysArgIleLeuGluLeuIleLeuIleIle : 365 ||||! !:!!|||||| !|||||| !!|||! ! !! !! ||||||||||||.!! rMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePhe 287089 : CATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTC : 287145 366 : AlaArgSerSerValValIleGluIleThrAlaGlyLysLeuIleHisMetSerIleH : 385 ||| !|||!:! ! !|||:!!:!!||||||||||||:!!||| !!:!:|||:!! AlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuS 287146 : GCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAA : 287205 386 : isThrPheGlyAspValMetArgLeuAlaPheAlaTyrLeuAsnIle : 400 !!:!||| !!..!|||! ! !:!! !!!.:!!|||! !:!!:!: erSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 287206 : GCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 287252 vulgar: gi|350396509|ref|XP_003484577.1| 278 400 . KQ414889.1 286812 287252 + 220 M 59 177 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286813 287252 220 + . gene_id 23 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286813 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286813 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286813 287252 220 + . alignment_id 23 ; Query gi|350396509|ref|XP_003484577.1| ; Align 286813 279 177 ; Align 287064 338 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 336 -> 390 Target range: 264723 -> 264885 337 : GlnCysMetLysValGlyGluIleValTyrMetThrAsnTrpTyrIleLeuProArgL : 356 ||||||! !||||||||||||:!:|||||||||:!!||||||||| !|||||| !| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 357 : ysArgIleLeuGluLeuIleLeuIleIleAlaArgSerSerValValIleGluIleTh : 375 || !||||||!!:||||||||||||||| !|||||||||||||||.!!:!!.!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 376 : rAlaGlyLysLeuIleHisMetSerIleHisThrPheGlyAspVal : 390 ||||||||||:!!:!!|||||||||!!::!!||||||.!!|||||| rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: gi|350396509|ref|XP_003484577.1| 336 390 . KQ414889.1 264723 264885 + 204 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264885 204 + . gene_id 24 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264885 204 + . alignment_id 24 ; Query gi|350396509|ref|XP_003484577.1| ; Align 264724 337 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 196 Query range: 300 -> 390 Target range: 301686 -> 302036 301 : GluTrpSerAspHisAspValArgSerLeuThrSerTyrPheIleIlePheAlaSerV : 320 ||||||..!:!! !|||..!! !:!!:!! !!!!!:!|||! !:!:!!..!!||| GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerP 301687 : GAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGT : 301744 321 : alThrPheAsnThrPheLeuLeuCysTyrIleGlyGluLeuLeuThrGluGln >>> : 338 !!|||||||||! !|||:!!!!!|||||||||||||||:!!|||:!!|||||| heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301745 : TCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt... : 301800 339 : > Target Intron 1 >>>> CysMetLysValGlyGluIleValTyrMetThrA : 349 80 bp |||! :!!:!!|||..! ! !||| !! !: ++CysSerGlnIleGlySerAlaSerTyrGluIleA 301801 : ......................agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCG : 301911 350 : snTrpTyrIleLeuProArgLysArgIleLeuGluLeuIleLeuIleIleAlaArgSe : 368 !!||||||! !|||||| !|||||| !! !!!:|||||||||:!!! !!.!! !|| spTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSe 301912 : ATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATC : 301968 369 : rSerValValIleGluIleThrAlaGlyLysLeuIleHisMetSerIleHisThrPhe : 387 |..! ! ! :!!:!!||||||||||||:!!||| !!:!:|||:!::!!|||||| rGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPhe 301969 : GCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTC : 302025 388 : GlyAspVal : 390 .!!..!||| SerSerVal 302026 : AGCTCTGTA : 302036 vulgar: gi|350396509|ref|XP_003484577.1| 300 390 . KQ414889.1 301686 302036 + 196 M 37 111 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301687 302036 196 + . gene_id 25 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301687 302036 196 + . alignment_id 25 ; Query gi|350396509|ref|XP_003484577.1| ; Align 301687 301 111 ; Align 301878 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 195 Query range: 16 -> 153 Target range: 299689 -> 300102 17 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProTyrPhe< : 36 |||!!!||||||:!! !!:!|||!!.|||||||||||||||!.!|||! !! .!. TyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpArgLeuLeuA 299690 : TACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGCGATTGCTAG : 299747 37 : ->SerThrThrSerThrLeuGluLysValIleSerValSerLeuIleIleLeuCysTy : 54 ..! !:!!|||! !|||||| ! :!!:!!|||:!! !|||!!:! !:!!|||!: spGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMetThrIleCysPh 299748 : ATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATGACAATATGCTT : 299804 55 : rValValIleLeuPheSerIleIleProCysValAlaHisLeuIlePheGluAspAsp : 73 ! ! !:!:!!!|||! !:!!:!:|||! !! ! !:!!:!!.!!|||! !!!: ! eSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePhePheAlaGluLys 299805 : CTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCTTCGCGGAGAAA : 299861 74 : SerPheTyrArgLysValLysValPheGlyProLeuGlyHisTrpPheIleGlyGlyI : 93 |||.!.:!! !|||||||||||||||||||||:!!||| !!! .!! !..! !: SerIleHisValLysValLysValPheGlyProValGlyPheCysLeuSerSerIleV 299862 : AGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCATCG : 299921 94 : leAsnTyrThrAsnLeuLeuPheArgSerArgAsnIleSerAspCysValGluHisIl : 112 !!!!.||| ! !!|||! !.!.!.!.!! !! .!!..! |||:!!:!!|||:! alLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCysIleGlnHisVa 299922 : TCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGCATCCAACACGT : 299978 113 : eGluThrAspTrpGlnIleValThrLysGluLys--GlnGlnGlnValMetLeuLysH : 131 !|||! !||| ... ::!##!!.!:: !:!!||||||!:!: lGluArgAsp---UnkUnkUnkUnkUnkUnkArg##HisArgThrIleMetLeuArgT 299979 : CGAGAGAGAC---NNNNNNNNNNNNNNNNTTCGAATCATCGTACGATCATGTTGAGAT : 300034 132 : isAlaLysPheGlyArgTyrValSerAlaIleCysAlaIlePheValHisSerGlyIl : 150 !!!.!! .!..!!||| !!:!!!!!.!!:!:||||||:!:|||:!!:!!:!!||| yrValThrMetSerArgAsnLeuThrThrValCysAlaValPheLeuTyrAlaGlyGl 300035 : ACGTGACTATGAGCAGAAATCTGACGACCGTGTGCGCCGTGTTTCTTTACGCAGGTGG : 300091 151 : eMetSerTyr : 153 !||||||||| yMetSerTyr 300092 : TATGTCGTAT : 300102 vulgar: gi|350396509|ref|XP_003484577.1| 16 153 . KQ414889.1 299689 300102 + 195 M 19 57 G 0 3 M 80 240 G 1 0 M 7 21 F 0 2 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299690 300102 195 + . gene_id 26 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299690 300102 . + . KQ414889.1 exonerate:protein2genome:local exon 299690 300102 . + . insertions 3 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local similarity 299690 300102 195 + . alignment_id 26 ; Query gi|350396509|ref|XP_003484577.1| ; Align 299690 17 57 ; Align 299750 36 240 ; Align 299990 117 21 ; Align 300013 124 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 186 Query range: 335 -> 395 Target range: 283273 -> 283453 336 : GluGlnCysMetLysValGlyGluIleValTyrMetThrAsnTrpTyrIleLeuProA : 355 ..!||||||! ||||||||||||:!:|||||||||||||||! !!:! !|||||| ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 356 : rgLysArgIleLeuGluLeuIleLeuIleIleAlaArgSerSerValValIleGluIl : 374 !||| !||||||.!.|||:!!|||||||||:!!|||||||||:::||||||:::|| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 375 : eThrAlaGlyLysLeuIleHisMetSerIleHisThrPheGlyAspValMetArgLeu : 393 |||||||...|||||||||...|||||| :!!||||||! !|||||| !||| eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspValArgSerLeu 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTACGTTCACTT : 283445 394 : AlaPhe : 395 !||| LeuPhe 283446 : CTTTTT : 283453 vulgar: gi|350396509|ref|XP_003484577.1| 335 395 . KQ414889.1 283273 283453 + 186 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283453 186 + . gene_id 27 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283453 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283453 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283453 186 + . alignment_id 27 ; Query gi|350396509|ref|XP_003484577.1| ; Align 283274 336 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 300 -> 390 Target range: 206050 -> 206401 301 : GluTrpSerAspHisAspValArgSerLeuThrSerTyrPheIleIlePheAlaSerV : 320 ||||||..!:!!:!!:!!..!! !:!!:!!! ! !|||.!!! :!: !||| GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 321 : alThrPheAsnThrPheLeuLeuCysTyrIleGlyGluLeuLeuThrGluGln >>> : 338 !|||||| !..!|||:!!|||||||||||||||:!!||||||! !!!:||| ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 339 : > Target Intron 1 >>>> CysMetLysValGlyGluIleValTyrMetThrA : 349 81 bp ! |||||| !! ! !! !! !..!| ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 350 : snTrpTyrIleLeuProArgLysArgIleLeuGluLeuIleLeuIleIleAlaArgSe : 368 |||||||| !||||||!.!!:!!.! ! !...:!!|||||||||||||||! !|| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 369 : rSerValValIleGluIleThrAlaGlyLysLeuIleHisMetSerIleHisThrPhe : 387 |!:! ! !|||:!!:!!||||||||||||:!!.!!.!.||||||:!! !!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 388 : GlyAspVal : 390 !|||||| ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: gi|350396509|ref|XP_003484577.1| 300 390 . KQ414889.1 206050 206401 + 172 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 172 + . gene_id 28 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 172 + . alignment_id 28 ; Query gi|350396509|ref|XP_003484577.1| ; Align 206051 301 111 ; Align 206243 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 300 -> 337 Target range: 277371 -> 277482 301 : GluTrpSerAspHisAspValArgSerLeuThrSerTyrPheIleIlePheAlaSerV : 320 |||||||||||| !||||||!:!!!!:!!|||!!!:!!|||!!:|||.!! !|||: GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 321 : alThrPheAsnThrPheLeuLeuCysTyrIleGlyGluLeuLeuThrGluGln : 337 !: |||||| ||| !:!!|||||||||||||||:!!|||||||||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAG : 277482 vulgar: gi|350396509|ref|XP_003484577.1| 300 337 . KQ414889.1 277371 277482 + 130 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277482 130 + . gene_id 29 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277482 130 + . alignment_id 29 ; Query gi|350396509|ref|XP_003484577.1| ; Align 277372 301 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 300 -> 348 Target range: 224323 -> 224467 301 : GluTrpSerAspHisAspValArgSerLeuThrSerTyrPheIleIlePheAlaSerV : 320 |||||||||... !!:!!! !||| !..!!!!|||||||||:!!.!! !|||: GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 321 : alThrPheAsnThrPheLeuLeuCysTyrIleGlyGluLeuLeuThrGluGlnCysMe : 339 ::||||||||| |||:::...||||||||||||||||||:!!.!!|||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlnValLy 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggtgaa : 224438 340 : tLysValGlyGluIleValTyrMetThr : 348 ... :::::: ::: ||| sAsnPheLeuLysLeuPhePheThrThr 224439 : aaattttttaaaattattcttcacCACT : 224467 vulgar: gi|350396509|ref|XP_003484577.1| 300 348 . KQ414889.1 224323 224467 + 117 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224467 117 + . gene_id 30 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224324 224467 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224467 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224467 117 + . alignment_id 30 ; Query gi|350396509|ref|XP_003484577.1| ; Align 224324 301 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 296 -> 337 Target range: 210651 -> 210774 297 : TyrIleValThrGluTrpSerAspHisAspValArgSerLeuThrSerTyrPheIleI : 316 !:!:!!:!! !||||||..!..! ! ||| !! !||| ! !!!!|||.!.:!!: PheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValL 210652 : TTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTAC : 210709 317 : lePheAlaSerValThrPheAsnThrPheLeuLeuCysTyrIleGlyGluLeuLeuTh : 335 !!.!!.!!|||||||||||||||! !|||:!!!!!|||||||||||||||:!!|||.! euLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAl 210710 : TCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGC : 210766 336 : rGluGln : 337 !|||||| aGluGln 210767 : TGAACAg : 210774 vulgar: gi|350396509|ref|XP_003484577.1| 296 337 . KQ414889.1 210651 210774 + 110 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210652 210774 110 + . gene_id 31 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 210652 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210652 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210652 210774 110 + . alignment_id 31 ; Query gi|350396509|ref|XP_003484577.1| ; Align 210652 297 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 336 -> 390 Target range: 292389 -> 292551 337 : GlnCysMetLysValGlyGluIleValTyrMetThrAsnTrpTyrIleLeuProArgL : 356 ||| !!! :!!:!!!.!.!. ! !||| |||.!.||||||! !|||||||||: GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 357 : ysArgIleLeuGluLeuIleLeuIleIleAlaArgSerSerValValIleGluIleTh : 375 :!!:! !! !!!::!!:!!|||:!::!!|||! !!!!!.! ! !|||:!!:!!|| rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 376 : rAlaGlyLysLeuIleHisMetSerIleHisThrPheGlyAspVal : 390 ||||||||||:!!.!! !:!:|||:!::!!|||||||||! !||| rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaVal 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTA : 292551 vulgar: gi|350396509|ref|XP_003484577.1| 336 390 . KQ414889.1 292389 292551 + 110 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 292551 110 + . gene_id 32 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292390 292551 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 292551 110 + . alignment_id 32 ; Query gi|350396509|ref|XP_003484577.1| ; Align 292390 337 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 300 -> 337 Target range: 244441 -> 244552 301 : GluTrpSerAspHisAspValArgSerLeuThrSerTyrPheIleIlePheAlaSerV : 320 ||||||:!!!!: !|||!.!!:!! !|||! !!!!||||||||| !.!!!.!:!!: GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheIleAlaLeuValAlaI 244442 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTATAGCACTCGTTGCTA : 244499 321 : alThrPheAsnThrPheLeuLeuCysTyrIleGlyGluLeuLeuThrGluGln : 337 !!..!! !|||||||||:!!||||||||||||.!!!!: !|||||||||||| leValSerAsnThrPheIleLeuCysTyrIleSerAspArgLeuThrGluGln 244500 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGACAGGCTGACAGAACAG : 244552 vulgar: gi|350396509|ref|XP_003484577.1| 300 337 . KQ414889.1 244441 244552 + 108 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244442 244552 108 + . gene_id 33 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244442 244552 . + . KQ414889.1 exonerate:protein2genome:local exon 244442 244552 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244442 244552 108 + . alignment_id 33 ; Query gi|350396509|ref|XP_003484577.1| ; Align 244442 301 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1351 Query range: 0 -> 403 Target range: 256601 -> 258738 1 : MetThrAsnGlnProValThrIleGlyAlaSerAlaLysAlaAsnSerAspTyrGlyL : 20 |||||||||:!! !!.!..!:!! !.!!!:! !|||::! !!|||||||||.!!| MetThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerL 256602 : ATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTC : 256659 21 : euGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProSerPheProSerTh : 39 |||||||||||||||||||||||||||||||||||!.!|||||| !!! !!||||| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 256660 : TCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCAC : 256716 40 : rThrArgPheGluLysIleValSerIleThrLeuAsnValIleCysTyrSerSerIle : 58 ||||! !.!!|||::!! !|||||||||..!||||||:!!:!!||||||.!!|||||| rThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIle 256717 : TACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATA : 256773 59 : IleLeuThrThrIleProCysLeuValArgMetPheLeuGluAspGluSerIleTyrL : 78 :!:!!!||| !||||||||||||:!!!.!:!:||||||!!:|||!!:|||.!!|||: LeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrM 256774 : TTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAca : 256833 79 : euLysLeuLysSerLeuGlyProValSerHisTrpIleValSerGlyAlaAsnTyrTh : 97 ::|||:::|||:::...||||||:!!||||||||||||:!!||| !!||||||||||| etLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrTh 256834 : tgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACAC : 256890 98 : rThrLeuLeuLeuArgSerLysAspIleArgGlnCysMetGluHisMetGluAlaAsp : 116 | !|||||||||!:!.!!|||||||||||| ! |||:!:||||||!!:|||.!!||| rLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAsp 256891 : GTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGAT : 256947 117 : TrpGlnThrValThrArgGluLysAspGlnTrpValMetLeuLysAsnAlaLysPheG : 136 |||::!! !|||! !||||||||||||||| ||||||:!!|||||||||!:!|||| TrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheG 256948 : TGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCG : 257007 137 : lyArgTyrValAlaAlaSerCysAlaIlePheMetGlnSerGlyIleMetCysPheIl : 155 ||||||||||||||.!!! !|||||| !.!!||||||||||||:::...||||||.. lyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePh 257008 : GTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttctt : 257064 156 : ePheValAlaAlaMetAspThrValGluIleGlnIleGlyAsnGluThrArgIleLeu : 174 . !:!!|||:!!:!!|||! ! !|||!!.:!:||||||||||||! !|||:!! eValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleVal 257065 : cgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTG : 257121 175 : HisValLeuProCysAlaValTyrLysLysLeuIleAsnValAspGluSerProThrA : 194 !..||||||||| !.!!|||||||||||||||:!:|||||||||:!!|||||||||| ArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrA 257122 : CGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGA : 257181 195 : snGluIleMetLeuPheLeuGlnAlaTrpCysThrMetIleAlaAsnSerSerThrVa : 213 ||||||||:!!:!!|||:!!|||.!!|||! :!!!!:||||||!.!!!!|||||||| snGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrVa 257182 : ACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGT : 257238 214 : lGlyMetPheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGlyGlnLeuAsnVal : 232 |.!!!!:||||||||||||||||||!!!|||.!!||||||! !|||||||||!.!||| lSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrVal 257239 : TAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTG : 257295 233 : ValMetValTrpIleThrGluPheValAsnGluProLys<-><-><->LysThrAspG : 249 :!!||| !|||||||||||||||||||||||| !!!:! |||||| LeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheP 257296 : CTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttc : 257355 250 : lyProAsnSerIleGlyValIleValGluArgHisLeuArgThrLeu{As} >>>> : 265 !!!...!||||||||||||||||||!.!|||||||||..!|||{!:} roPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Se}++ 257356 : ctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt..... : 257407 266 : Target Intron 1 >>>> {n}PheIleGlyTyrIleGluAsnLeuMetAsnArg : 276 76 bp {!}||||||..!|||||||||.!.:!!||||||||| ++{r}PheIleSerTyrIleGluGluValMetAsnArg 257408 : ....................ag{T}TTCATATCATATATCGAGGAAGTGATGAACCGA : 257512 277 : IleTyrPheLeuGluIlePheArgCysThrMetAspIleCysIleLeuGlyTyrTyrI : 296 |||! !|||||||||:!:||||||||||||:!!! !||||||!!:||||||||||||| IleCysPheLeuGluLeuPheArgCysThrLeuAlaIleCysMetLeuGlyTyrTyrI 257513 : ATATGTTTTTTAGAGTTGTTTAGATGCACGCTGGCTATATGCATGCTGGGATACTACA : 257572 297 : leLeuSer >>>> Target Intron 2 >>>> GluTrpAlaAspGlnAsnVal : 305 |||||:!! 684 bp ||||||:!! |||:::::: leLeuAla++ ++GluTrpSerThrGlnAspIle 257573 : TTCTTGCGgt.........................aggaATGGTCTACGCaagatatt : 258283 306 : GlnSerLeuIleThrTyrIleMetIleTyrIleSerIleGlyPheAsnValPheLeuI : 325 |||:::||| :::|||.!!|||||| !||||||:::...||||||:::|||:::| GlnAsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValI 258284 : caaaatttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaa : 258343 326 : leCysTyrIleGlyGluIleLeuThrGluGln >>>> Target Intron 3 >>> : 336 |||||||||||||||||||||||||||||||| 90 bp leCysTyrIleGlyGluIleLeuThrGluGln++ 258344 : tatgttACATAGGTGAAATATTAACAGAACAGgt........................ : 258378 337 : > SerLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAspL : 354 !!!||||||||||||!!:|||||||||||||||:!!||||||||||||||||||| ++CysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspL 258379 : .agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACA : 258520 355 : ysThrIleLeuAspLeuIleLeuIleIleAlaArgSerGlyValValValGlnIleTh : 373 ||! !||||||||||||||||||:!!||||||||||||.!!||||||||||||||||| ysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleTh 258521 : AAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCAC : 258577 374 : rAlaGlyLysMetValHisMetSerValTyrThrPheGlyAsp >>>> Target I : 388 ||||||||||... |||||||||:!!|||||||||.!!||| 69 rAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAsp++ 258578 : CGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATgt............. : 258624 389 : ntron 4 >>>> ValValLysThrGlyPheAlaTyrLeuAsnLeuLeuArgGlnMe : 402 bp |||:!!||||||..!|||||||||||||||||||||||||||:! ++ValIleLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnVa 258625 : ............agGTAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGT : 258733 403 : tThr : 403 ::!! lSer 258734 : ATCG : 258738 vulgar: gi|350396511|ref|XP_003484578.1| 0 403 . KQ414889.1 256601 258738 + 1351 M 245 735 G 0 9 M 19 57 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256602 258738 1351 + . gene_id 1 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256602 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256602 257404 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256602 258738 1351 + . alignment_id 1 ; Query gi|350396511|ref|XP_003484578.1| ; Align 256602 1 735 ; Align 257346 246 57 ; Align 257482 266 99 ; Align 258265 299 111 ; Align 258466 336 156 ; Align 258691 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1231 Query range: 0 -> 365 Target range: 259721 -> 262015 1 : MetThrAsnGlnProValThrIleGlyAlaSerAlaLysAlaAsnSerAspTyrGlyL : 20 |||||||||:!! !!||| !:!!! !.!!||| !! ::!:!!|||||||||.!!| MetThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerL 259722 : ATGACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCC : 259779 21 : euGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProSerPheProSerTh : 39 |||||!!!|||||||||||||||||||||||||||!.!|||||| !!! !!||||| euGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 259780 : TCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCAC : 259836 40 : rThrArgPheGluLysIleValSerIleThrLeuAsnValIleCysTyrSerSerIle : 58 |||||||.!!|||||||||:!!|||:!!! !|||! ! !!||||||||||||!!!||| rThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIle 259837 : GACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATA : 259893 59 : IleLeuThrThrIleProCysLeuValArgMetPheLeuGluAspGluSerIleTyrL : 78 :!::!!||| !|||||||||:!!:!!!.!|||.!.|||||| ! ||||||:!:|||: LeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrM 259894 : CTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACA : 259953 79 : euLysLeuLysSerLeuGlyProValSerHisTrpIleValSerGlyAlaAsnTyrTh : 97 !!||| !||| !|||||||||:!!!!!||||||.!!|||.!! !! !|||||||| etLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrTh 259954 : TGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACAC : 260010 98 : rThrLeuLeuLeuArgSerLysAspIleArgGlnCysMetGluHisMetGluAlaAsp : 116 ||||||||||||||||.!!!:!||||||! !...|||:!!||||||:!!||| !||| rThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAsp 260011 : AACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGAT : 260067 117 : TrpGlnThrValThrArgGluLysAspGlnTrpValMetLeuLysAsnAlaLysPheG : 136 |||::!! !:!!|||||||||||||||||| |||||||||!:! !!|||||||||| TrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheG 260068 : TGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCG : 260127 137 : lyArgTyrValAlaAlaSerCysAlaIlePheMetGlnSerGlyIleMetCysPheIl : 155 |||||||||||||||||||||||||| !|||:!!|||.!!|||:!!:!!|||||| lyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCy 260128 : GCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTG : 260184 156 : ePheValAlaAlaMetAspThrValGluIleGlnIleGlyAsnGluThrArgIleLeu : 174 !!!.|||.!!!.!:!!..!|||! !! !||||||:!:||||||||||||||||||:!! sLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal 260185 : TTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTT : 260241 175 : HisValLeuProCysAlaValTyrLysLysLeuIleAsnValAspGluSerProThrA : 194 |||:!!|||||||||||||||||||||:!!||||||||||||:!!!!:||||||! !| HisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetA 260242 : CATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGA : 260301 195 : snGluIleMetLeuPheLeuGlnAlaTrpCysThrMetIleAlaAsnSerSerThrVa : 213 ||||||||:!:||| !!:!!||| ! ! !.!.|||!.!|||||||||||||| snGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrVa 260302 : ACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGT : 260358 214 : lGlyMetPheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGlyGlnLeuAsnVal : 232 ||||!!:|||||||||||||||||||||.!!||||||||||||||||||||||||||| lGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnVal 260359 : TGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTG : 260415 233 : ValMetValTrpIleThrGluPheValAsnGluPro<-><->LysLysThrAspGlyP : 250 :!!|||! !||||||||||||||||||:!!||| !! !:!|||! ! ! !.!| LeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaP 260416 : CTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTC : 260475 251 : ro<->AsnSerIleGlyValIleValGluArgHisLeuArgThrLeu{As} >>>> : 265 || !!...!||||||||||||||||||!.!|||||||||.!!|||{!.} roPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeu{Th}++ 260476 : CTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC{AC}gt..... : 260527 266 : Target Intron 1 >>>> {n}PheIleGlyTyrIleGluAsnLeuMetAsnArg : 276 257 bp {!}||||||..! !||||||:!!:!!||||||||| ++{r}PheIleSerArgIleGluAspValMetAsnArg 260528 : ....................ag{C}TTCATATCGCGTATCGAGGATGTGATGAACCGG : 260813 277 : IleTyrPheLeuGluIlePheArgCysThrMetAspIleCysIleLeuGlyTyrTyrI : 296 |||! !|||||||||:!:||||||||||||:!!|||||||||:!!||||||||||||| IleCysPheLeuGluLeuPheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrI 260814 : ATATGCTTCCTGGAGTTGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATA : 260873 297 : leLeuSer >>>> Target Intron 2 >>>> GluTrpAlaAspGlnAsnVal : 305 |||||! ! 852 bp |||||||||!!:|||:!!:!! leLeuMet++ ++GluTrpAlaGluGlnAspIle 260874 : TTCTTATGgt.........................agGAATGGGCTGAGCAAGATATA : 261752 306 : GlnSerLeuIleThrTyrIleMetIleTyrIleSerIleGlyPheAsnValPheLeuI : 325 |||!:!||| !||||||.!!|||!!: |||:!!||| !!||||||||||||:!!| GlnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheIleI 261753 : CAAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAA : 261812 326 : leCysTyrIleGlyGluIleLeuThrGluGln >>>> Target Intron 3 >>> : 336 |||||||||||||||||||||||||||||||| 81 bp leCysTyrIleGlyGluIleLeuThrGluGln++ 261813 : TCTGTTACATCGGTGAAATACTAACGGAACAGgt........................ : 261847 337 : > SerLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAspL : 354 !!!..!|||||||||!!:||||||||||||||||||||||||||||||||||||| ++CysSerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuProAspL 261848 : .agTGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACCTGATA : 261980 355 : ysThrIleLeuAspLeuIleLeuIleIleAlaArg : 365 ||!:!|||||||||||||||||||||||||||||| ysSerIleLeuAspLeuIleLeuIleIleAlaArg 261981 : AAAGTATCCTTGATTTGATTTTGATCATTGCACGA : 262015 vulgar: gi|350396511|ref|XP_003484578.1| 0 365 . KQ414889.1 259721 262015 + 1231 M 244 732 G 0 6 M 6 18 G 0 3 M 14 42 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259722 262015 1231 + . gene_id 2 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259722 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259722 260524 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262015 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262015 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259722 262015 1231 + . alignment_id 2 ; Query gi|350396511|ref|XP_003484578.1| ; Align 259722 1 732 ; Align 260460 245 18 ; Align 260481 251 42 ; Align 260783 266 99 ; Align 261734 299 111 ; Align 261926 336 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 955 Query range: 1 -> 403 Target range: 236804 -> 238921 2 : ThrAsnGlnProValThrIleGlyAlaSerAlaLysAlaAsnSerAspTyrGlyLeuG : 21 !.!:!!:!! !!|||..!! !! ! !!:! !! |||!:!|||||||||.!!|||| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuG 236805 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCC : 236862 22 : lnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProSerPheProSerThrTh : 40 ||! !||||||||| :!!||| !||||||..!||||||..!||| !!||| lnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSer----- 236863 : AGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCG----- : 236916 41 : rArgPheGluLysIleValSerIleThrLeuAsnValIleCysTyrSerSerIleIle : 59 !.!.!!|||!:!! !:!!||| !! !||||||||||||||||||!!!:!!|||:!! -AsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeu 236917 : -AACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTA : 236970 60 : LeuThrThrIleProCysLeuValArgMetPheLeuGluAspGluSerIleTyrLeuL : 79 !!!:!!! !|||||||||! !:!!!.!:!:.!.|||||| ! ! !!!!.!!||| !| PheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrL 236971 : TTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGA : 237030 80 : ysLeuLysSerLeuGlyProValSerHisTrpIleValSerGlyAlaAsnTyrThrTh : 98 ||:!!|||! !|||||| !!:!!|||||||||:!: !!!!! ! !!:!||||||! ysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMe 237031 : AAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCAT : 237087 99 : rLeuLeuLeuArgSerLysAspIleArgGlnCysMetGluHisMetGluAlaAspTrp : 117 !|||||||||||| !!||| !||||||!!.! !.!..!.|||||||||.!!|||||| tLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrp 237088 : GCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGG : 237144 118 : GlnThrValThrArgGluLysAspGlnTrpValMetLeuLysAsnAlaLysPheGlyA : 137 ::!|||..!||||||:::::: ::: |||||||||||| !!|||||||||.!!| ArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerA 237145 : AGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTC : 237204 138 : rgTyrValAlaAlaSerCysAlaIlePheMetGlnSerGlyIleMetCysPheIlePh : 156 |||||!.!||| !||||||.!!||||||!!:!!..!!||||||:!: ! !:! ! ! rgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysVa 237205 : GATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGT : 237261 157 : eValAlaAlaMetAspThrValGluIleGlnIleGlyAsnGluThrArgIleLeuHis : 175 !:!!.!!||| !|||:!!! :!! !:!!||||||:!!|||! !||||||!.! lMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLeuArg 237262 : TATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGC : 237318 176 : ValLeuProCysAlaValTyrLysLysLeuIleAsnValAspGluSerProThrAsnG : 195 |||||||||! !!:!!|||||| !|||:!! |||||| !!:! !!! !|||! ValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnA 237319 : GTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACG : 237378 196 : luIleMetLeuPheLeuGlnAlaTrpCysThrMetIleAlaAsnSerSerThrValGl : 214 !:|||:!::!!!!.! !||| ! ! ! !.!.|||||||||!:!|||.!!:!!.! spIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSe 237379 : ACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAG : 237435 215 : yMetPheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGlyGlnLeuAsnValVal : 233 !:!:.!.||||||.!!::!!.!|||.!!:!!||||||! !|||||||||!:!|||||| rValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValVal 237436 : TGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTT : 237492 234 : MetValTrpIleThrGluPheValAsnGluProLys<-><-><->LysThrAspGlyP : 250 |||:!!! !||| !!!:||||||!:!||| !!!:! ||| !||| ! MetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAspHisP 237493 : ATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATCATT : 237552 251 : roAsnSerIleGlyValIleValGluArgHisLeuArgThrLeu{As} >>>> Tar : 265 !:!!..!||| !..!|||||||||..!|||||||||..!|||{||} heAspGluIleProThrIleValGluGluHisLeuArgValLeu{As}++ 237553 : TCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTG{AA}gt........ : 237601 266 : get Intron 1 >>>> {n}PheIleGlyTyrIleGluAsnLeuMetAsnArgIle : 277 68 bp {|}||||||..! !|||||| :!!||||||!:! ++{n}PheIleSerArgIleGluAlaMetMetAsnLysAla 237602 : .................ag{C}TTCATATCGCGCATAGAGGCAATGATGAACAAAGCG : 237701 278 : TyrPheLeuGluIlePheArgCysThrMetAspIleCysIleLeuGlyTyrTyrIleL : 297 ! !|||||||||:!!.!.||||||! !!!:! !:!!||| !|||||||||||||||! CysPheLeuGluLeuMetArgCysMetIleAlaValCysAlaLeuGlyTyrTyrIleP 237702 : TGTTTCCTGGAGTTAATGAGGTGCATGATAGCTGTATGCGCACTTGGATATTATATAT : 237761 298 : euSer >>>> Target Intron 2 >>>> GluTrpAlaAspGlnAsnValGln : 306 !!! ! 645 bp |||||||||!!:...:!!!.!:!! heMet++ ++GluTrpAlaGluSerAspAlaLys 237762 : TCATGgt.........................agGAATGGGCAGAGAGCGATGCTAAA : 238433 307 : SerLeuIleThrTyrIleMetIleTyrIleSerIleGlyPheAsnValPheLeuIleC : 326 ! !||||||||||||.!!:!: ! !:!!:!!|||! !! !|||..!|||:!!:!!| IleLeuIleThrTyrPheValAlaLeuValAlaIleValSerAsnThrPheIleLeuC 238434 : ATCTTAATCACGTACTTTGTAGCACTCGTTGCTATTGTTTCTAATACATTTATACTCT : 238493 327 : ysTyrIleGlyGluIleLeuThrGluGln >>>> Target Intron 3 >>>> : 336 ||||||||.!!|||! |||||||||||| 106 bp ysTyrIleSerGluArgLeuThrGluGln++ ++ 238494 : GTTATATCAGCGAAAGGCTGACAGAACAGgt.........................ag : 238627 337 : SerLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAspLysT : 355 !!! !|||||||||||||||||||||||||||:!!|||||||||||||||.!.!:!! CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgA 238628 : TGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAA : 238686 356 : hrIleLeuAspLeuIleLeuIleIleAlaArgSerGlyValValValGlnIleThrAl : 374 !|||||||||||||||||||||||| !||||||..!|||||||||:!!:!!||||| rgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValThrAl 238687 : GAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCACCGC : 238743 375 : aGlyLysMetValHisMetSerValTyrThrPheGlyAsp >>>> Target Intr : 388 |||||||:!::!!|||||||||:!!||||||||||||||| 89 bp aGlyLysValLeuHisMetSerLeuTyrThrPheGlyAsp++ 238744 : TGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATgt................ : 238787 389 : on 4 >>>> ValValLysThrGlyPheAlaTyrLeuAsnLeuLeuArgGlnMetTh : 403 ||||||||||||||||||||||||:!!|||:!!||| !!||||||:! ++ValValLysThrGlyPheAlaTyrMetAsnMetLeuCysGlnMetSe 238788 : .........agGTAGTAAAAACAGGATTCGCCTACATGAATATGCTTTGTCAAATGTC : 238919 404 : r : 403 ! r 238920 : C : 238921 vulgar: gi|350396511|ref|XP_003484578.1| 1 403 . KQ414889.1 236804 238921 + 955 M 37 111 G 2 0 M 205 615 G 0 9 M 19 57 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 33 99 5 0 2 I 0 641 3 0 2 M 37 111 5 0 2 I 0 102 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236805 238921 955 + . gene_id 3 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 236805 237598 . + . KQ414889.1 exonerate:protein2genome:local exon 236805 237598 . + . insertions 9 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 237599 237600 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 237599 237666 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 237665 237666 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 237667 237766 . + . KQ414889.1 exonerate:protein2genome:local exon 237667 237766 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 237767 237768 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 237767 238411 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 238410 238411 . + . intron_id 1 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 238412 238522 . + . KQ414889.1 exonerate:protein2genome:local exon 238412 238522 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238523 238524 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238523 238628 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 238627 238628 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238629 238784 . + . KQ414889.1 exonerate:protein2genome:local exon 238629 238784 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238785 238786 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238785 238873 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 238872 238873 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238874 238921 . + . KQ414889.1 exonerate:protein2genome:local exon 238874 238921 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 236805 238921 955 + . alignment_id 3 ; Query gi|350396511|ref|XP_003484578.1| ; Align 236805 2 111 ; Align 236916 41 615 ; Align 237540 246 57 ; Align 237668 266 99 ; Align 238412 299 111 ; Align 238629 336 156 ; Align 238874 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 899 Query range: 0 -> 298 Target range: 266586 -> 267558 1 : MetThrAsnGlnProValThrIleGlyAlaSerAlaLysAlaAsnSerAspTyrGlyL : 20 |||.!!|||:!! !!:!!..!|||! !|||!:! !!!.::! |||||||||.!!| MetAlaAsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerL 266587 : ATGGCTAACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCC : 266644 21 : euGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProSerPheProSerTh : 39 |||||||||||||||||||||||||||||||||||!.!|||||| !!!!. !! !|| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuTh 266645 : TGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCAC : 266701 40 : rThrArgPheGluLysIleValSerIleThrLeuAsnValIleCysTyrSerSerIle : 58 |:!!!:!.!!|||::!||||||||| !.!!|||! !||||||||||||!!!|||||| rSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIle 266702 : ATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATA : 266758 59 : IleLeuThrThrIleProCysLeuValArgMetPheLeuGluAspGluSerIleTyrL : 78 :!:!!!|||..!|||||||||||| !!!.!:!: !!|||||||||||||||||| ! LeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgT 266759 : CTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTA : 266818 79 : euLysLeuLysSerLeuGlyProValSerHisTrpIleValSerGlyAlaAsnTyrTh : 97 !|||:!!||| !!!!||||||:!!|||||||||.!!|||.!!||| !|||||||| hrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrTh 266819 : CGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACAC : 266875 98 : rThrLeuLeuLeuArgSerLysAspIleArgGlnCysMetGluHisMetGluAlaAsp : 116 ||||||||||||||||||||||!!:|||||| |||:!:|||||||||:!!.!!||| rThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAsp 266876 : CACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGAT : 266932 117 : TrpGlnThrValThrArgGluLysAspGlnTrpValMetLeuLysAsnAlaLysPheG : 136 |||::!! !||||||||| !:!!|||:!! !||||||||||||||||||!:!.!!| TrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleG 266933 : TGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCG : 266992 137 : lyArgTyrValAlaAlaSerCysAlaIlePheMetGlnSerGlyIleMetCysPheIl : 155 ||||||||:!!||| !! !|||||| |||||||||!!!|||:!!:!: !!!:! lyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCy 266993 : GTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTG : 267049 156 : ePheValAlaAlaMetAspThrValGluIleGlnIleGlyAsnGluThrArgIleLeu : 174 ! ! :!!.!!|||.!. !! ! ! :!::!!:!!||||||||||||||||||:!! sValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleVal 267050 : TGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTA : 267106 175 : HisValLeuProCysAlaValTyrLysLysLeuIleAsnValAspGluSerProThrA : 194 |||:!!||||||||||||||||||||||||:!!||| |||||| |||||||||| HisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrA 267107 : CATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGA : 267166 195 : snGluIleMetLeuPheLeuGlnAlaTrpCysThrMetIleAlaAsnSerSerThrVa : 213 ||||||||:!:||| !!! !||| ! ! !.!.|||!.!|||||||||..!|| snGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValVa 267167 : ACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGT : 267223 214 : lGlyMetPheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGlyGlnLeuAsnVal : 232 |||| ||||||||||||||||||!!!||||||||||||||||||||||||!:!||| lGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerVal 267224 : CGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTG : 267280 233 : ValMetValTrpIleThrGluPheValAsnGluProLysLysThrAspGlyPro<->< : 251 :!!|||:!!||||||! !||||||||||||..! !!!:! ! !:!:!! ! ! LeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValC 267281 : CTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTT : 267340 252 : -><->AsnSerIleGlyValIleValGluArgHisLeuArgThrLeu{As} >>>> : 265 :!!!.!|||||||||:!!||||||!.!|||||||||..!|||{!:} ysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 267341 : GCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG}gt..... : 267392 266 : Target Intron 1 >>>> {n}PheIleGlyTyrIleGluAsnLeuMetAsnArg : 276 69 bp {!}||||||!.! !||||||!:!:!!|||!:!..! ++{r}PheIleAlaArgIleGluSerValMetSerGlu 267393 : ....................ag{C}TTCATAGCACGTATCGAAAGTGTAATGAGCGAA : 267490 277 : IleTyrPheLeuGluIlePheArgCysThrMetAspIleCysIleLeuGlyTyrTyrI : 296 |||! !|||:!!|||:!:|||!:!||||||||||||||||||:!:|||.!!||||||| IleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSerTyrTyrI 267491 : ATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCTATTATA : 267550 297 : leLeuSer : 298 |||||!!! leLeuThr 267551 : TCCTTACG : 267558 vulgar: gi|350396511|ref|XP_003484578.1| 0 298 . KQ414889.1 266586 267558 + 899 M 250 750 G 0 9 M 14 42 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266587 267558 899 + . gene_id 4 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266587 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266587 267389 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267558 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267558 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266587 267558 899 + . alignment_id 4 ; Query gi|350396511|ref|XP_003484578.1| ; Align 266587 1 750 ; Align 267346 251 42 ; Align 267460 266 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 874 Query range: 1 -> 298 Target range: 274335 -> 275309 2 : ThrAsnGlnProValThrIleGlyAlaSerAlaLysAlaAsnSerAspTyrGlyLeuG : 21 !.!||| !!:!!!.!:!! !|||!:! ! ! ::! !|||||||||.!!|||| AsnAsnCysAlaIleAsnValThrAlaAsnPheAspSerLeuSerAspTyrSerLeuG 274336 : AACAACTGTGCGATAAACGTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGC : 274393 22 : lnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProSerPheProSerThrTh : 40 ||||||||||||||||||||||||||||||||!.!||||||! ! ! !! !!||||| lnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaSerProThrTh 274394 : AATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCAC : 274450 41 : rArgPheGluLysIleValSerIleThrLeuAsnValIleCysTyrSerSerIleIle : 59 |!:!||||||::!|||:!!||| ! ||| :::||||||!!!! !|||:!! rLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeu 274451 : GAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTGCTTCATACTC : 274507 60 : LeuThrThrIleProCysLeuValArgMetPheLeuGluAspGluSerIleTyrLeuL : 79 ! !|||..!|||||| !!:!! !!!.!!!:.!.|||! !|||||||||:!!:!!|||| SerThrValIleProSerIlePheHisIleIleLeuValAspGluSerLeuHisLeuL 274508 : TCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGA : 274567 80 : ysLeuLysSerLeuGlyProValSerHisTrpIleValSerGlyAlaAsnTyrThrTh : 98 ||||||||! !|||||||||:!!.!!||||||.!!:!!.!!||| !||||||||||| ysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrTh 274568 : AGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCAC : 274624 99 : rLeuLeuLeuArgSerLysAspIleArgGlnCysMetGluHisMetGluAlaAspTrp : 117 |||||||||||||||||||!!:|||||| |||:!!|||||||||:!!.!!|||||| rLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrp 274625 : GCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGG : 274681 118 : GlnThrValThrArgGluLysAspGlnTrpValMetLeuLysAsnAlaLysPheGlyA : 137 ::!! !||||||||| !:!!|||||| |||||||||||||||||||||.!!|||| ArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyA 274682 : AGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTC : 274741 138 : rgTyrValAlaAlaSerCysAlaIlePheMetGlnSerGlyIleMetCysPheIlePh : 156 ||||||||||| !! !|||||| |||||||||!!!|||:!!:!:|||!:! ! ! rgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysVa 274742 : GTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGT : 274798 157 : eValAlaAlaMetAspThrValGluIleGlnIleGlyAsnGluThrArgIleLeuHis : 175 :!!.!!|||.!. !! ! ! :!!|||:!!|||||||||||||||! !:!!||| lIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrArgThrValHis 274799 : GATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCAT : 274855 176 : ValLeuProCysAlaValTyrLysLysLeuIleAsnValAspGluSerProThrAsnG : 195 :!!||||||||| !!.!|||||||||:!!:!! |||||| !||||||||||||| MetLeuProCysLysAlaTyrLysLysIleValAlaValAspThrSerProThrAsnG 274856 : ATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACG : 274915 196 : luIleMetLeuPheLeuGlnAlaTrpCysThrMetIleAlaAsnSerSerThrValGl : 214 |||||:!:||| !! !||| ! !! !.!.|||!.!|||||||||.!!||||| luIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerSerAlaValGl 274916 : AGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGG : 274972 215 : yMetPheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGlyGlnLeuAsnValVal : 233 | ||||||||||||||||||!!!||||||||||||! !|||||||||!:!|||:!! yAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeu 274973 : CGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTG : 275029 234 : MetValTrpIleThrGluPheValAsn<-><-><->GluProLysLysThrAspGlyP : 250 |||:!!||||||||||||||||||||| !!: ...|||... MetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsnLysAsnValTyrP 275030 : ATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatt : 275089 251 : roAsnSerIleGlyValIleValGluArgHisLeuArgThrLeu{As} >>>> Tar : 265 ::!..!|||||||||:!!||||||!.!|||||||||..!|||{!:} heSerGluIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 275090 : tcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTC{AG}gt........ : 275138 266 : get Intron 1 >>>> {n}PheIleGlyTyrIleGluAsnLeuMetAsnArgIle : 277 74 bp {!}||||||!.! !||||||:!!:!!|||||||||||| ++{r}PheIleAlaArgIleGluAspValMetAsnArgIle 275139 : .................ag{T}TTCATAGCACGTATCGAGGATGTGATGAATCGAATA : 275244 278 : TyrPheLeuGluIlePheArgCysThrMetAspIleCysIleLeuGlyTyrTyrIleL : 297 ! !|||:!!|||:!:|||!:!||||||:!!|||!!:|||!!:|||||||||||||||| CysPheMetGluLeuPheLysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleL 275245 : TGCTTCATGGAATTGTTCAAGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTC : 275304 298 : euSer : 298 ||!!! euThr 275305 : TCACG : 275309 vulgar: gi|350396511|ref|XP_003484578.1| 1 298 . KQ414889.1 274335 275309 + 874 M 241 723 G 0 9 M 22 66 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274336 275309 874 + . gene_id 5 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274336 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274336 275135 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275309 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275309 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274336 275309 874 + . alignment_id 5 ; Query gi|350396511|ref|XP_003484578.1| ; Align 274336 2 723 ; Align 275068 243 66 ; Align 275211 266 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 800 Query range: 15 -> 335 Target range: 262843 -> 264648 16 : SerAspTyrGlyLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProS : 35 |||||||||.!!||||||:!!|||||||||.!.|||||||||||||||!.!|||||| SerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProL 262844 : AGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCAC : 262901 36 : erPheProSerThrThrArgPheGluLysIleValSerIleThrLeuAsnValIleCy : 54 !! ! !!|||! !:!!|||.!.|||::!|||:!!!!!.!! !|||! !|||:!!|| euSerAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCy 262902 : TGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTG : 262958 55 : sTyrSerSerIleIleLeuThrThrIleProCysLeuValArgMetPheLeuGluAsp : 73 ||||!!! !|||:!!! !|||..!||||||! !:!!:!!!.!!!: !!||||||! ! sTyrCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAla 262959 : TTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCC : 263015 74 : GluSerIleTyrLeuLysLeuLysSerLeuGlyProValSerHisTrpIleValSerG : 93 |||!:!.!!:!!:!!||||||:!! !|||||||||:!!.!!!!.|||.!!|||.!! GluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyM 263016 : GAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTA : 263075 94 : lyAlaAsnTyrThrThrLeuLeuLeuArgSerLysAspIleArgGlnCysMetGluHi : 112 ! !||||||||| !|||||||||!.!||||||||||||!:! |||:!!:!!|| etIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHi 263076 : TGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACA : 263132 113 : sMetGluAlaAspTrpGlnThrValThrArgGluLysAspGlnTrpValMetLeuLys : 131 |:!!:!!! !|||||| ! !||||||||| !:!!|||||| ! :!!||||||||| sValGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLys 263133 : CGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAG : 263189 132 : AsnAlaLysPheGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnSerGlyI : 151 |||||||||!:!|||||||||||||||||||||||||||||||||||||||!!!.!!| AsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerI 263190 : AACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCA : 263249 152 : leMetCysPheIlePheValAlaAlaMetAspThrValGluIleGlnIleGlyAsnGl : 170 |||||||| !.!.|||.!!|||.!. !||| !! !|||:!! !|||||||| leMetCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGl 263250 : TCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGA : 263306 171 : uThrArgIleLeuHisValLeuProCysAlaValTyrLysLysLeuIleAsnValAsp : 189 |||||||||||||!.!:!!||||||||| !!|||||||||:!!:!!||| |||||| uThrArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAsp 263307 : GACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGAC : 263363 190 : GluSerProThrAsnGluIleMetLeuPheLeuGlnAlaTrpCysThrMetIleAlaA : 209 !!:!|||||||||||||||.!.||| ! !||| ! !! !.!.|||!.!! ThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValT 263364 : ACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCA : 263423 210 : snSerSerThrValGlyMetPheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGl : 228 .!:!!!!!||||||||| |||.!!:!!.!!||||||!!!|||!.!||||||||||| hrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGl 263424 : CCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGG : 263480 229 : yGlnLeuAsnValValMetValTrpIleThrGluPheValAsnGluProLysLysThr : 247 |||||||||||||:!!||| !|||||||||||||||||||||:!! !!!:! ! ! yGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGlu 263481 : ACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAG : 263537 248 : AspGlyPro<-><-><->AsnSerIleGlyValIleValGluArgHisLeuArgThr : 264 :!! ! ! !.!..!||||||||||||||||||!.!|||||||||..! AsnLysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgVal- 263538 : AATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTc : 263597 265 : >>>> Target Intron 1 >>>> LeuAsnPheIleGlyTyrIleGluAsnLeu : 273 72 bp ! !!:!||||||! ! !|||:!!|||:!! + +-CysSerPheIleAspArgIleLysAsnVal 263598 : t.........................atTGTAGTTTCATAGATCGTATTAAGAATGTG : 263696 274 : MetAsnArgIleTyrPheLeuGluIlePheArgCysThrMetAspIleCysIle >> : 292 |||!:!! !|||! !|||:!!|||:!!|||!:!..!|||:!!|||||||||!!: MetSerThrIleCysPheValGluLeuPheLysAlaThrLeuAspIleCysMet-+ 263697 : ATGAGTACGATATGTTTCGTGGAGTTATTCAAGGCTACGCTGGATATATGCATGct.. : 263755 293 : >> Target Intron 2 >>>> LeuGlyTyrTyrIleLeuSerGluTrpAlaAsp : 302 764 bp :!! ! ! !!:!!!!!..!||||||! !..! +-IleThrIleAspValPheGlnGluTrpGluSer 263756 : .......................atATAACAATTGACGTTTTTCAGGAATGGGAAAGT : 264547 303 : GlnAsnValGlnSerLeuIleThrTyrIleMetIleTyrIleSerIleGlyPheAsnV : 322 !!.::::::|||:::||| !||||||.!!|||||| ||||||!!: !! !|||: HisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerMetCysGlyAsnI 264548 : CAtgatattcaaaatttgacTACATATTTCATGATACTGATATCAATGTGCGGCAACA : 264607 323 : alPheLeuIleCysTyrIleGlyGluIleLeuThrGluGln : 335 !!||||||!!:|||||||||||||||||||||||||||||| lePheLeuMetCysTyrIleGlyGluIleLeuThrGluGln 264608 : TTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcag : 264648 vulgar: gi|350396511|ref|XP_003484578.1| 15 335 . KQ414889.1 262843 264648 + 800 M 235 705 G 0 9 M 13 39 5 0 2 I 0 68 3 0 2 M 28 84 5 0 2 I 0 760 3 0 2 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262844 264648 800 + . gene_id 6 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262844 263596 . + . KQ414889.1 exonerate:protein2genome:local exon 262844 263596 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263597 263598 . + . intron_id 1 ; splice_site "CT" KQ414889.1 exonerate:protein2genome:local intron 263597 263668 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263667 263668 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 263669 263752 . + . KQ414889.1 exonerate:protein2genome:local exon 263669 263752 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263753 263754 . + . intron_id 2 ; splice_site "CT" KQ414889.1 exonerate:protein2genome:local intron 263753 264516 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264515 264516 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 264517 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264517 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262844 264648 800 + . alignment_id 6 ; Query gi|350396511|ref|XP_003484578.1| ; Align 262844 16 705 ; Align 263558 251 39 ; Align 263669 264 84 ; Align 264517 292 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 798 Query range: 10 -> 388 Target range: 232438 -> 235147 11 : SerAlaLysAlaAsnSerAspTyrGlyLeuGlnLeuAsnArgTrpPheLeuLysProI : 30 !:!|||! ! !:!!! !!!:|||.!!:!!|||:!!|||||||||||||||! !|||! AsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProM 232439 : AACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGA : 232496 31 : leGlyValTrpProSerPheProSerThrThrArgPheGluLysIleValSerIleTh : 49 !:|||!.!|||||| !! !! !!..!|||:!!||| !:!!:!!:!!:!!:!!! ! etGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLe 232497 : TGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACT : 232553 50 : rLeuAsnValIleCysTyrSerSerIleIleLeuThrThrIleProCysLeuValArg : 68 !|||!..:!!! !|||:!!||| !!!:|||! !:!!! !:!!||||||:!!:!! ! uLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPhe 232554 : GTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTC : 232610 69 : MetPheLeuGluAspGluSerIleTyrLeuLysLeuLysSerLeuGlyProValSerH : 88 !!:.!.!!!|||||| !|||:!! ! !!:!:!!||||||:!!||||||:!!|||| IleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerH 232611 : ATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTC : 232670 89 : isTrpIleValSerGlyAlaAsnTyrThrThrLeuLeuLeuArgSerLysAspIleAr : 107 ||!:::!::!!.!!! ! !|||||| ! !|||||| !!:!:!!!!.||||||! isPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLe 232671 : ACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCT : 232727 108 : gGlnCysMetGluHisMetGluAlaAspTrpGlnThrValThrArgGluLysAspGln : 126 ! ! |||:!!|||!!.:!!:!! !||||||!:!!.!|||! !!:! !!!:: uTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArg 232728 : CTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGT : 232784 127 : TrpValMetLeuLysAsnAlaLysPheGlyArgTyrValAlaAlaSerCysAlaIleP : 146 :!!||||||||||||||||||.!!||||||! :!!|||..!! !..!|||.!!! AspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheC 232785 : GATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTT : 232844 147 : heMetGlnSerGlyIleMetCysPheIlePheValAlaAlaMetAspThrValGluIl : 165 !|||!!.!!!|||:!! ! ! ! !.!.|||.!!!.!:!: !! ! ! !.! ysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPh 232845 : GCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTT : 232901 166 : eGlnIleGlyAsnGluThrArgIleLeuHisValLeuProCysAlaValTyrLysLys : 184 ! ! :!:|||||||||!:! ! :!!:!! !|||||||||.!! !!|||! !||| eTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLys 232902 : CTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAG : 232958 185 : LeuIleAsnValAspGluSerProThrAsnGluIleMetLeuPheLeuGlnAlaTrpC : 204 |||!!::!!..! |||||||||||||||||||||!!! !!||||||..! ! LeuMetAspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuS 232959 : CTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCT : 233018 205 : ysThrMetIleAlaAsnSerSerThrValGlyMetPheSerLeuAlaAlaValLeuAl : 223 ! !.!.|||!.!|||||| !||||||||| ! !.!!|||!.!||||||||||| erGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAl 233019 : CCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGC : 233075 224 : aAlaHisAlaCysGlyGlnLeuAsnValValMetValTrpIleThrGluPheValAsn : 242 | !|||||||||||||||||||||||||||||| ! :!: !!!:!!.|||:!! aMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAsp 233076 : GATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGAC : 233132 243 : GluProLysLysThrAsp<-><->GlyProAsnSerIleGlyValIleValGluArgH : 260 ! ! ! !:!! !!!: !.!! !!..!.!:!!||| !!|||||||||!.!| AlaLysGlyGlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisH 233133 : GCGAAAGGGCAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATC : 233192 261 : isLeuArgThrLeu{As} >>>> Target Intron 1 >>>> {n}PheIleGl : 268 ||||||||||||||{!:} 1315 bp {!}|||||| ! isLeuArgThrLeu{Se}++ ++{r}PheIleAr 233193 : ATTTGCGTACATTA{AG}gt.........................ag{T}TTTATACG : 234531 269 : yTyrIleGluAsnLeuMetAsnArgIleTyrPheLeuGluIlePheArgCysThrMet : 287 ! !!|||||||||:!!||||||! !|||! !.!.:!!|||:!: ! !!||||||:!! gAsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuValGlyCysThrLeu 234532 : GAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACGTTG : 234588 288 : AspIleCysIleLeuGlyTyrTyrIleLeuSer >>>> Target Intron 2 >> : 299 :!!!!:|||!!:|||! !||||||:!!|||!!! 189 bp AsnMetCysMetLeuGluTyrTyrLeuLeuThr++ 234589 : AACATGTGCATGCTCGAGTATTATTTACTCACGgt....................... : 234626 300 : >> GluTrpAlaAspGlnAsnValGlnSerLeuIleThrTyrIleMetIleTyrIle : 316 ||| :!:::: :::...||| !:!!|||:!!!!::!:|||:!: ++Glu---------LysSerLysGluLysLeuAlaSerTyrValIleValTyrVal 234627 : ..agGAA---------AAgtcgaaggaaaaattagCTTCATACGTCATCGTGTACGTG : 234855 317 : SerIleGlyPheAsnValPheLeuIleCysTyrIleGlyGluIleLeuThrGluGln : 336 |||!!: !||||||:::|||:::...|||||||||||||||! |||||||||||| SerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGln+ 234856 : TCCATGACATTtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGCAGg : 234915 337 : >>>> Target Intron 3 >>>> SerLysLysValGlyGluValValTyrMet : 345 74 bp !!!! |||||||||||| !||||||||| + ++CysThrLysValGlyGluLysValTyrMet 234916 : t.........................agTGTACCAAAGTCGGAGAAAAAGTGTACATG : 235016 346 : ThrAsnTrpTyrTyrLeuProAspLysThrIleLeuAspLeuIleLeuIleIleAlaA : 365 |||.!.|||||| |||||| !!|||||| !|||! !|||:!!:!!||||||:!!| ThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSerA 235017 : ACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCA : 235076 366 : rgSerGlyValValValGlnIleThrAlaGlyLysMetValHisMetSerValTyrTh : 384 |||||.!!:!!|||:!!:!!|||||||||||||||.!.:!!!!.||||||||| || rgSerSerMetValIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaTh 235077 : GGTCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAAC : 235133 385 : rPheGlyAspVal : 388 ||||||||||||| rPheGlyAspVal 235134 : ATTTGGCGATGTG : 235147 vulgar: gi|350396511|ref|XP_003484578.1| 10 388 . KQ414889.1 232438 235147 + 798 M 238 714 G 0 6 M 16 48 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 33 99 5 0 2 I 0 185 3 0 2 M 1 3 G 3 0 M 33 99 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232439 235147 798 + . gene_id 7 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232439 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232439 233208 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232439 235147 798 + . alignment_id 7 ; Query gi|350396511|ref|XP_003484578.1| ; Align 232439 11 714 ; Align 233159 249 48 ; Align 234525 266 99 ; Align 234813 299 3 ; Align 234816 303 99 ; Align 234989 336 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 566 Query range: 17 -> 398 Target range: 284523 -> 287252 18 : TyrGlyLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProSerPheP : 37 |||.!!:!!|||:!!|||||||||||||||||||||||||||||||||||| ! !! TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 38 : roSerThrThrArgPheGluLysIleValSerIleThrLeuAsnValIleCysTyrSe : 56 !!!!..!|||! !!!.||||||||| !|||:!:..!||| :!!||| !!! !! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 57 : rSerIleIleLeuThrThrIleProCysLeuValArgMetPheLeuGluAspGlu<-> : 75 ! !||| !!!! ! !:!!|||||| !:!! !!! ! |||!!: ! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 76 : SerIleTyrLeuLysLeuLysSerLeuGlyProValSerHisTrpIleValSerGlyA : 94 ..!:!! !! !|||:!!|||! !:!!||||||:!!||| !!! !!::!!:!!!.! AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 95 : laAsnTyrThrThrLeuLeuLeuArgSerLysAspIleArgGlnCysMetGluHisMe : 113 !!!.||| !! !|||:!!! !|||.!! ! ||| !!||||||:!!:!! !!!! leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 114 : tGluAlaAsp{Tr} >>>> Target Intron 1 >>>> {p}GlnThrValThr : 121 :...||||||{||} 1012 bp {|}! :!! !!:: eArgAlaAsp{Tr}++ +-{p}LeuSerHisSer 284813 : TCGTGCGGAC{TG}gt.........................ac{G}CTTTCGCATAGt : 285848 122 : ArgGluLysAspGlnTrpValMetLeuLysAsnAlaLysPheGlyArgTyrValAlaA : 141 :::|||::::::::: :::||| ! ! !:!|||!:!.!!||||||! !:!!||| GlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaI 285849 : caagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGA : 285908 142 : laSerCysAlaIlePheMetGlnSerGlyIleMetCysPheIlePheValAlaAlaMe : 160 !! !|||||| !|||||| ! |||||| !.!.! !!:!! ! ||| ! !!:! lePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLe 285909 : TCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTT : 285965 161 : tAspThrValGluIleGlnIleGlyAsnGluThrArgIleLeuHisValLeuProCys : 179 ! !||||||...! :!!||| ! !!!:!.!..!! !:!!... !! ! !!! ! uCysThrValArgThrGluIle---IleAspAsnGluThrValArgSerGlnAlaPhe 285966 : GTGCACAGTACGCACGGAGATC---ATCGACAACGAGACCGTGAGATCTCAAGCGTTC : 286019 180 : AlaValTyrLysLysLeuIleAsnValAspGluSerProThrAsnGluIleMetLeuP : 199 !!:!!|||::: |||:!!:!! ! ! ||||||:!! !||||||:!!! !| ProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnP 286020 : CCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAAT : 286079 200 : heLeuGlnAlaTrpCysThrMetIleAlaAsnSerSerThrValGlyMetPheSerLe : 218 ||:!!|||..!! !..!.!!.!.:!! ! !!||| !||||||||| ! !||||| heMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLe 286080 : TCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTT : 286136 219 : uAlaAlaValLeuAlaAlaHisAlaCysGlyGlnLeuAsnValValMetValTrpIle : 237 ||||||||||!!!!.! !|||!.!|||||||||!!!!..:!!:!!:!!..! !:!: uAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeu 286137 : GGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTG : 286193 238 : ThrGluPheValAsnGluProLysLysThrAspGlyProAsnSer<-><-><-><->I : 253 !:!!.!!|||:!!! ! !||| !! ! ! ||| !!:!!!! : AspLysLeuValAspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgL 286194 : GATAAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGAC : 286253 254 : leGlyValIleValGluArgHisLeuArgThrLeu{As} >>>> Target Intro : 265 !:|||! !|||:!!|||!.!||||||!:!! !|||{..} 408 bp euGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 286254 : TGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt................. : 286293 266 : n 2 >>>> {n}PheIleGlyTyrIleGluAsnLeuMetAsnArgIleTyrPheLeu : 280 {!}||||||..! ! ||||||...|||:!:|||..!|||! !|||:!! ++{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheVal 286294 : ........ag{T}TTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTC : 286742 281 : GluIlePheArgCysThrMetAspIleCysIleLeuGlyTyrTyrIleLeuSer >> : 299 |||:!:.!! !!||||||:!!:!!||||||.!!||||||||||||:!!|||!!! GluValIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeuThr++ 286743 : GAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTACTGACGgt.. : 286801 300 : >> Target Intron 3 >>>> GluTrpAlaAspGlnAsnValGlnSerLeuIle : 309 80 bp ||||||! !.!.....!...! !.!! !||| ++GluTrpGluGlnSerGluThrIleGlyThrIle 286802 : .......................agGAATGGGAGCAAAGTGAAACTATAGGAACGATC : 286909 310 : ThrTyrIleMetIleTyrIleSerIleGlyPheAsnValPheLeuIleCysTyrIleG : 329 |||||| !! !:!: :!!|||.!! !||||||||||||:!!:!!|||||||||| ThrTyrCysThrLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleG 286910 : ACGTATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCG : 286969 330 : lyGluIleLeuThrGluGln >>>> Target Intron 4 >>>> SerLysLys : 338 |||||||||||:!!|||||| 74 bp !! !||| lyGluIleLeuSerGluGln++ ++CysLeuLys 286970 : GTGAAATTCTCTCCGAACaggt.........................agtGCTTAAAA : 287070 339 : ValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAspLysThrIleLeuA : 358 |||||| ! !..!||||||! !:!!|||||| !||||||! |||||| !! !! ValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnG 287071 : GTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAG : 287130 359 : spLeuIleLeuIleIleAlaArgSerGlyValValValGlnIleThrAlaGlyLysMe : 377 !||||||||||||.!!||| !|||..! ! !:!!:!!:!!||||||||||||!! lyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIl 287131 : GTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGAT : 287187 378 : tValHisMetSerValTyrThrPheGlyAspValValLysThrGlyPheAlaTyrLeu : 396 ::!! !!:!:|||:!! !!:!||| !!..!||| !! ! !..!!!.:!!|||! ! eIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyr 287188 : CATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTAT : 287244 397 : AsnLeu : 398 :!!||| HisLeu 287245 : CATTTG : 287252 vulgar: gi|350396511|ref|XP_003484578.1| 17 398 . KQ414889.1 284523 287252 + 566 M 57 171 G 0 3 M 42 126 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 50 150 G 1 0 M 84 252 G 0 12 M 12 36 S 0 2 5 0 2 I 0 404 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 287252 566 + . gene_id 8 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284524 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286698 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 4 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 3 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284524 287252 566 + . alignment_id 8 ; Query gi|350396511|ref|XP_003484578.1| ; Align 284524 18 171 ; Align 284698 75 126 ; Align 285839 118 150 ; Align 285989 169 252 ; Align 286253 253 36 ; Align 286700 266 99 ; Align 286879 299 111 ; Align 287064 336 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 565 Query range: 12 -> 335 Target range: 217159 -> 219439 13 : LysAlaAsnSerAspTyrGlyLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyV : 32 ::: ||| ::: .!!:!!|||! !|||||||||!!.|||||||||!!:|||: GluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyL 217160 : gagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTC : 217217 33 : alTrpProSerPheProSerThrThrArgPheGluLysIleValSerIleThrLeuAs : 51 !!||||||!:!! ! !!!!|||||||||! !..!||||||:!!! !! ! !:!!|| euTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAs 217218 : TTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAA : 217274 52 : nValIleCysTyrSerSerIleIleLeuThrThrIleProCysLeuValArgMetPhe : 70 |!.!:!!||||||.!!! !|||! !!!! ! !:!!||||||! !:!! !:!!||| nAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPhe 217275 : CGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTC : 217331 71 : LeuGluAspGluSerIleTyrLeuLysLeuLysSerLeuGlyProValSerHisTrpI : 90 ||||||! !|||..!:!!||| !||||||||| !!!!||||||:!!! ! !!! : LeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysV 217332 : CTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCG : 217391 91 : leValSerGlyAlaAsnTyrThrThrLeuLeuLeuArgSerLysAspIleArgGlnCy : 109 !::!!:!! !!.!!!.||| !:!!|||:!!:!!!.!!.! !|||||||||:!!|| alMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCy 217392 : TGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTG : 217448 110 : sMetGluHisMetGluAlaAspTrpGlnThrValThrArgGluLysAspGlnTrpVal : 128 |:!!..!...!!:||| !||||||::!!.!|||! ! !!|||||||||::! !!.! sValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArgGluAla 217449 : CGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCG : 217505 129 : MetLeuLysAsnAlaLysPheGlyArgTyrValAlaAlaSerCysAlaIlePheMetG : 148 |||:!! !||||||!!.||||||||| ! :!!!.! ! !|||.!!.!!|||||| MetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetT 217506 : ATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGT : 217565 149 : lnSerGlyIleMetCysPheIlePheValAlaAlaMetAspThrValGluIleGlnIl : 167 ! ||||||...::: ::: ..!!.! ! !!!!:..!..!! !..!|||! ! yrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSe 217566 : ACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATC : 217622 168 : eGlyAsnGluThrArgIleLeuHisValLeuProCysAlaValTyrLysLysLeuIle : 186 ! !|||! !!.!! !! !!!! ! !||| !! ! !! !! ||| ! :!!||| rGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyrIleIle 217623 : GGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATC : 217679 187 : AsnValAspGluSerProThrAsnGluIleMetLeuPheLeuGlnAlaTrpCysThrM : 206 :!!..! ! ! !!!|||||||||||||||:!!!!!||||||||| ! ..! ! AspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyA 217680 : GATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAG : 217739 207 : etIleAlaAsnSerSerThrValGlyMetPheSerLeuAlaAlaValLeuAlaAlaHi : 225 :!: !:!!.!!! !||| !!.! ! !||||||||||||!.!!!!|||!.!|| laLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHi 217740 : CTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCA : 217796 226 : sAlaCysGlyGlnLeuAsnValValMetValTrpIleThrGluPheValAsn<->Glu : 243 |||||||||||||:!!.!.|||:!!||| !|||:!: !.!.!!.:!!:!! ..! sAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArg 217797 : TGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGA : 217853 244 : ProLysLysThrAspGlyProAsnSer<->IleGlyValIleValGluArgHisLeuA : 262 !! ! ! !!:!||| ! !:!!.!! |||!.! !||||||...!:!|||:!!| AlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnHisValA 217854 : GCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTC : 217913 263 : rgThrLeu{As} >>>> Target Intron 1 >>>> {n}PheIleGlyTyrIl : 270 ||! !|||{!!} 1229 bp {.}|||::: ! !! rgIleLeu{Ly}++ ++{s}PheLeuThrLeuTh 217914 : GGATATTA{AA}gt.........................ag{a}tttttgaCGCTCAC : 219166 271 : eGluAsnLeuMetAsnArgIleTyrPheLeuGluIlePheArgCysThrMetAspIle : 289 !|||!.. !:!:.!.!:!|||! !||| !|||.!!.!. !!||||||||||||||| rGluArgThrLeuGlnGlnIleSerPheAlaGluPheLeuGlyCysThrMetAspIle 219167 : AGAGAGAACCCTCCAGCAAATCTCTTTCGCTGAATTTCTAGGATGCACCATGGACATA : 219223 290 : CysIleLeuGlyTyrTyrIleLeuSer >>>> Target Intron 2 >>>> Gl : 299 |||:!!:!!||||||||||||:!! ! 76 bp || CysLeuValGlyTyrTyrIleIleVal++ ++Gl 219224 : TGTCTCGTTGGATATTACATTATCGTGgt.........................agGA : 219329 300 : uTrpAlaAspGlnAsnValGlnSerLeuIleThrTyrIleMetIleTyrIleSerIle : 318 |||| !....!.:!!||| !||| !:!:|||||||||!!::!! !||||||:!: uTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerLeu 219330 : ATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCCTc : 219386 319 : GlyPheAsnValPheLeuIleCysTyrIleGlyGluIleLeuThrGluGln : 335 ||||||:::|||:::...||||||||||||||||||:!!.!!|||||| ThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln 219387 : actttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: gi|350396511|ref|XP_003484578.1| 12 335 . KQ414889.1 217159 219439 + 565 M 230 690 G 0 3 M 10 30 G 0 3 M 12 36 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217160 219439 565 + . gene_id 9 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217160 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217160 217923 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217160 219439 565 + . alignment_id 9 ; Query gi|350396511|ref|XP_003484578.1| ; Align 217160 13 690 ; Align 217853 243 30 ; Align 217886 253 36 ; Align 219154 266 99 ; Align 219329 299 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 511 Query range: 1 -> 335 Target range: 208164 -> 210774 2 : ThrAsnGlnProValThrIleGlyAlaSerAlaLysAlaAsnSerAspTyrGlyLeuG : 21 |||! ::!! !:!! !:!!..! !!:! !||| !:!! !..!!:!..!:!!! ThrMetArgGlnIlePheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValA 208165 : ACGATGAGACAAATATTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTC : 208222 22 : lnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProSerPheProSerThrTh : 40 ::|||||| !||| |||||| !|||||| !||||||!!!! ! !..! !:! rgLeuAsnValTrpThrLeuLysIleIleGlySerTrpProArgSerIleAspArgSe 208223 : GTCTGAACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTC : 208279 41 : rArgPheGluLysIleValSerIleThrLeuAsnValIleCysTyrSerSerIleIle : 59 ! !!!!.|||!!.! ! ! !||| !|||||||||:!! !!:!!!!!! !:!! ! rTrpLeuGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGly 208280 : CTGGTTAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGT : 208336 60 : LeuThrThrIleProCysLeuValArgMetPheLeuGluAspGluSerIleTyrLeuL : 79 !!!! !..!|||||| ! !:!! ! !.!!|||! !! !|||..!.!!||| !: PheIleValIleProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspG 208337 : TTCATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACC : 208396 80 : ysLeuLysSerLeuGlyProValSerHisTrpIleValSerGlyAlaAsnTyrThrTh : 98 !!||||||! !! !.!! !!:!!||| !!::!!::!!:!! !.!!!!.|||..!! lnLeuLysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIl 208397 : AATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGAT : 208453 99 : rLeuLeuLeuArgSerLysAspIleArgGlnCysMetGluHisMetGluAlaAspTrp : 117 !:!! !:!!|||..! |||||||||:!!|||:!:|||:!!:!:|||||||||||| eMetThrValArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrp 208454 : CATGACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGG : 208510 118 : GlnThrValThrArgGluLysAspGlnTrpValMetLeuLysAsnAlaLysPheGlyA : 137 ::!!.!||| !!.!|||:!!|||::! !:!!|||||| ! ||||||!..|||!.!| ArgAsnValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaA 208511 : AGAAACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCA : 208570 138 : rgTyrValAlaAlaSerCysAlaIlePheMetGlnSerGlyIleMetCysPheIlePh : 156 || ! :!! !!.!! !|||!.! !|||||| ! .!!|||:::::: ::: .! rgLysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIl 208571 : GGAAACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaT : 208627 157 : eValAlaAlaMetAspThrValGluIleGlnIleGlyAsnGluThrArgIleLeuHis : 175 !!.! ! !!:!: ! !! !:!!:!! ! !..!! !.! !! ! !... eAlaLeuProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArg 208628 : CGCTTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGA : 208684 176 : ValLeuProCysAlaValTyrLysLysLeuIleAsnValAspGluSerProThrAsnG : 195 !||| !! ! !!||| !||| :!!:!::!!||| ! ||||||..!|||| ArgLeuValTyrProValProLysPheIleLeuAspValArgTyrSerProValAsnG 208685 : AGGCTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATG : 208744 196 : luIleMetLeuPheLeuGlnAlaTrpCysThrMetIleAlaAsnSerSerThrValGl : 214 |||||.!.! ! :!!||| !! !! !.!.:!!|||:!!!:!! !|||||||| luIlePheTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGl 208745 : AGATTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGG : 208801 215 : yMetPheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGlyGlnLeuAsnValVal : 233 | ! !.!!|||||||||:!!|||||| !||||||||||||||||||.!.:!!:!! yAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeu 208802 : GGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTG : 208858 234 : MetValTrpIleThrGluPheValAsn<-><->GluProLysLysThrAspGlyProA : 251 ||| !|||!!: !:!!!!.|||:!! ||| !:!!:!!! !:!! ! !. MetSerTrpMetGluLysLeuValAspGlyArgGluAspGluGluLysAsnLeuAspG 208859 : ATGTCCTGGATGGAGAAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATC : 208918 252 : snSerIleGlyValIleValGluArgHisLeuArgThrLeu{As} >>>> Target : 265 !.!!!:!:!.! !|||||||||!:!|||:!!|||..!:!!{||} 15 lnArgLeuAlaAsnIleValGluGlnHisValArgValIle{As}++ 208919 : AGAGGTTGGCTAATATCGTGGAGCAGCATGTTCGAGTGATC{AA}gt........... : 208964 266 : Intron 1 >>>> {n}PheIleGlyTyrIleGluAsnLeuMetAsnArgIleTyr : 278 36 bp {|}||||||!.! ! !|||||||||:!!:!!..!|||! ++{n}PheIleAlaLeuThrGluAsnLeuLeuHisGluIleSer 208965 : ..............ag{T}TTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCA : 210535 279 : PheLeuGluIlePheArgCysThrMetAspIleCysIleLeuGlyTyrTyrIleLeuS : 298 !!.:!!|||!!: ! !!||||||:!!:!!!!:|||.!!||||||||||||! :!!! LeuIleGluMetValGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetI 210536 : TTGATAGAAATGGTGGGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGA : 210595 299 : er >>>> Target Intron 2 >>>> GluTrpAlaAspGlnAsnValGlnSer : 307 ! 66 bp ||||||! !..!:!!:!! ! ||| le++ ++GluTrpAspSerLysAspProIleSer 210596 : TTgt.........................agGAATGGGACTCTAAAGACCCTATCAGC : 210688 308 : LeuIleThrTyrIleMetIleTyrIleSerIleGlyPheAsnValPheLeuIleCysT : 327 !:!:|||||||||:!::!! !! !|||:!! !||||||:!!|||:!!.!!|||| SerLeuThrTyrIleValLeuLeuThrSerValThrPheAsnIlePheIlePheCysT 210689 : AGTCTGACGTACATAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTT : 210748 328 : yrIleGlyGluIleLeuThrGluGln : 335 |||||||||||:!:|||.!!|||||| yrIleGlyGluValLeuAlaGluGln 210749 : ACATCGGTGAAGTGTTGGCTGAACAg : 210774 vulgar: gi|350396511|ref|XP_003484578.1| 1 335 . KQ414889.1 208164 210774 + 511 M 241 723 G 0 6 M 22 66 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208165 210774 511 + . gene_id 10 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208165 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208165 208961 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208165 210774 511 + . alignment_id 10 ; Query gi|350396511|ref|XP_003484578.1| ; Align 208165 2 723 ; Align 208894 243 66 ; Align 210499 266 99 ; Align 210664 299 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 410 Query range: 12 -> 242 Target range: 221363 -> 222053 13 : LysAlaAsnSerAspTyrGlyLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyV : 32 |||.!!||| ! ! ! .!!:!!||||||!:!||||||.!!|||||||||||||||| LysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleGlyV 221364 : AAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTG : 221421 33 : alTrpProSerPheProSerThrThrArgPheGluLysIleValSerIleThrLeuAs : 51 ||||||||!:!! !!!:!! !:!!! ! ! |||!:! !:!!! ! !:!!|| alTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLeuIleAs 221422 : TTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAA : 221478 52 : nValIleCysTyrSerSerIleIleLeuThrThrIleProCysLeuValArgMetPhe : 70 ||||:!!||||||||| !|||! !!! ! !:!!|||||| !:!! !:!!.!! nValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyrValIle 221479 : CGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATC : 221535 71 : LeuGluAspGluSerIleTyrLeuLysLeuLysSerLeuGlyProValSerHisTrpI : 90 ||||||! |||..!:!!||| !!:!:!!|||! !|||||||||:!!||| !!! : LeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysV 221536 : CTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCG : 221595 91 : leValSerGlyAlaAsnTyrThrThrLeuLeuLeuArgSerLysAspIleArgGlnCy : 109 !::!!:!! ! !!!.||| ! !|||:!!||| !..!!!.|||||||||:!!|| alMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCy 221596 : TGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTG : 221652 110 : sMetGluHisMetGluAlaAspTrpGlnThrValThrArgGluLysAspGlnTrpVal : 128 |!!:|||!.!!!:||| !||||||:!!!.!:!!||| !...||||||:!! :!! sIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLysAspIle 221653 : CATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAGGATATA : 221709 129 : MetLeuLysAsnAlaLysPheGlyArgTyrValAlaAlaSerCysAlaIlePheMetG : 148 |||:!!:!!||||||! ||||||||| :!! ! !! !|||.!!.!!|||||| MetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheMetT 221710 : ATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGT : 221769 149 : lnSerGlyIleMetCysPheIlePheValAlaAlaMetAspThrValGluIleGlnIl : 167 ! ||||||...::: ::: ...!.! ! !!.!...!..!! !:!!|||! yrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIleProAl 221770 : ACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGC : 221826 168 : eGlyAsnGluThrArgIleLeuHisValLeuProCysAlaValTyrLysLysLeuIle : 186 !:!! ... ... !:!! !! ! !! !!! !:! :!!:!! aGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPheIleVal 221827 : GCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTC : 221883 187 : AsnValAspGluSerProThrAsnGluIleMetLeuPheLeuGlnAlaTrpCysThrM : 206 :!!..! ! ||||||..!|||||||||:!!!!!! |||||| ! !... ! AspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyA 221884 : GATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTG : 221943 207 : etIleAlaAsnSerSerThrValGlyMetPheSerLeuAlaAlaValLeuAlaAlaHi : 225 :!: !:!!|||! !||| !!.! ! !||||||!.!|||:!!!!!|||!.!|| laLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaValHi 221944 : CTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCA : 222000 226 : sAlaCysGlyGlnLeuAsnValValMetValTrpIleThrGluPheValAsn : 242 |||||||||||||:!!.!.|||:!!||| !|||:!:! !.!.!!.:!!||| sAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 222001 : CGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222053 vulgar: gi|350396511|ref|XP_003484578.1| 12 242 . KQ414889.1 221363 222053 + 410 M 230 690 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221364 222053 410 + . gene_id 11 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221364 222053 . + . KQ414889.1 exonerate:protein2genome:local exon 221364 222053 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221364 222053 410 + . alignment_id 11 ; Query gi|350396511|ref|XP_003484578.1| ; Align 221364 13 690 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 385 Query range: 22 -> 267 Target range: 212887 -> 213628 23 : AsnArgTrpPheLeuLysProIleGlyValTrpProSerPheProSerThrThrArgP : 42 |||||||||.!!|||||||||! |||:!!||||||..! !!! !..!:!!! !. AsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspLysSerTyrValSerProI 212888 : AATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGA : 212945 43 : heGluLysIleValSerIleThrLeuAsnValIleCysTyrSerSerIleIleLeuTh : 61 !!||||||! !:!!:!! ! !:!!|||..!:!!||||||.!!! !||| !! ! leGluLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLe 212946 : TCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCT : 213002 62 : rThrIleProCysLeuValArgMetPheLeuGluAspGluSerIleTyrLeuLysLeu : 80 !..!||||||||| !:!! !:!!||||||!!:! |||:::|||::: ::::!! uValIleProCysSerLeuTyrValPheLeuAspValGluAsnIlePheLysGluIle 213003 : TGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaagagaTC : 213059 81 : LysSerLeuGlyProValSerHisTrpIleValSerGlyAlaAsnTyrThrThrLeuL : 100 :!!! !!!!||| ! !!:!! !!! :!:!.!:!! ! !!!.||| !:!!|||: GluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuI 213060 : GAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGA : 213119 101 : euLeuArgSerLysAspIleArgGlnCysMetGluHisMetGluAlaAspTrpGlnTh : 119 !!|||!.!.!! ! ||||||||| !|||:!:|||||||||:!! !||||||:!!!. leLeuHisGlyAspAspIleArgThrCysValGluHisMetLysTyrAspTrpLysAs 213120 : TACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAA : 213176 120 : rValThrArgGluLysAspGlnTrpValMetLeuLysAsnAlaLysPheGlyArgTyr : 138 !:!!|||!.!|||:!!|||:!! :!!||| ! !||||||!..||||||!:! nIleThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArg 213177 : TATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGG : 213233 139 : ValAlaAlaSerCysAlaIlePheMetGlnSerGlyIleMetCysPheIlePheValA : 158 :!!!.!.!!! !||||||.!!|||||| ! !!!|||.!!! !! !!:!.!!.!!|||! IleValThrIleCysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuValV 213234 : ATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCG : 213293 159 : laAlaMetAspThrValGluIleGlnIleGlyAsnGluThrArgIleLeuHisValLe : 177 .! !!!!:..!.!!! !:!!!!: ! ! !:!! !.! !! !!!!... !:! alProIleSerAlaAspLysMetValAlaGluAspLeuAsnValThrPheArgGlnMe 213294 : TACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAAT : 213350 178 : uProCysAlaValTyrLysLysLeuIleAsnValAspGluSerProThrAsnGluIle : 196 ! ! ! !!|||! !:! :!!:!!:!!||| ! ||||||..!||||||||| tValValProValSerArgPheIleValAspValArgTyrSerProValAsnGluIle 213351 : GGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATA : 213407 197 : MetLeuPheLeuGlnAlaTrpCysThrMetIleAlaAsnSerSerThrValGlyMetP : 216 .!.!!!!!.:!!||| ! ..! !:!::!: !:!!:!!! !.!!|||! ! ! PhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAlaC 213408 : TTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTT : 213467 217 : heSerLeuAlaAlaValLeuAlaAlaHisAlaCysGlyGlnLeuAsnValValMetVa : 235 !|||||||||||||||!!!|||!.!|||||||||||||||:!!..!:!!:!!||| ysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSe 213468 : GTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAG : 213524 236 : lTrpIleThrGluPheValAsn<-><->GluProLysLysThrAspGlyProAsnSer : 252 !|||:!: !.!.!!.:!!:!! ||| !! !!..! !:!!! ! !:!!!!! rTrpLeuGluHisLeuIleAspGlyArgGluAspMetSerLysAsnValAspAspArg 213525 : CTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGCAAGAATGTGGACGACAGA : 213581 253 : IleGlyValIleValGluArgHisLeuArgThrLeuAsnPheIle : 267 |||!.!|||||||||.!.!:!|||:!!|||! !|||!!.!:::!: IleAlaValIleValAsnGlnHisValArgIleLeuLysTrpVal 213582 : ATCGCGGTCATCGTGAACCAGCATGTGCGGATACTGAAGTGGGTG : 213628 vulgar: gi|350396511|ref|XP_003484578.1| 22 267 . KQ414889.1 212887 213628 + 385 M 220 660 G 0 6 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212888 213628 385 + . gene_id 12 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212888 213628 . + . KQ414889.1 exonerate:protein2genome:local exon 212888 213628 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212888 213628 385 + . alignment_id 12 ; Query gi|350396511|ref|XP_003484578.1| ; Align 212888 23 660 ; Align 213554 243 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 383 Query range: 298 -> 403 Target range: 277371 -> 277842 299 : GluTrpAlaAspGlnAsnValGlnSerLeuIleThrTyrIleMetIleTyrIleSerI : 318 ||||||:!!|||...:!!||||||!!!:!!! !|||:!!.!!|||||| !||||||! GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 319 : leGlyPheAsnValPheLeuIleCysTyrIleGlyGluIleLeuThrGluGln >>> : 336 !: ||||||:::||| !:!!|||||||||||||||||||||||||||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 337 : > Target Intron 1 >>>> SerLysLysValGlyGluValValTyrMetThrA : 347 72 bp !!!||||||||||||||||||||||||||||||| ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 348 : snTrpTyrTyrLeuProAspLysThrIleLeuAspLeuIleLeuIleIleAlaArgSe : 366 ||||||||||||||||||||||| !||||||:!!|||:!!|||||||||:!!||||| snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 367 : rGlyValValValGlnIleThrAlaGlyLysMetValHisMetSerValTyrThrPhe : 385 |.!!:::|||::::::|||||||||||||||::::::...|||||||||||||||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 386 : GlyAsp >>>> Target Intron 2 >>>> ValValLysThrGlyPheAlaTy : 395 |||||| 84 bp |||:!!|||||| !|||||||| GlyAsp++ ++ValIleLysThrThrPheAlaTy 277703 : GGCGATgt.........................agGTAATAAAAACCACTTTCgcgta : 277816 396 : rLeuAsnLeuLeuArgGlnMetThr : 403 |||||||:::|||||||||! !||| rLeuAsnIleLeuArgGlnThrThr 277817 : tttaaatattctacgCCAAACGACG : 277842 vulgar: gi|350396511|ref|XP_003484578.1| 298 403 . KQ414889.1 277371 277842 + 383 M 37 111 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277842 383 + . gene_id 13 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277842 383 + . alignment_id 13 ; Query gi|350396511|ref|XP_003484578.1| ; Align 277372 299 111 ; Align 277555 336 156 ; Align 277795 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 369 Query range: 112 -> 388 Target range: 304413 -> 305783 113 : MetGluAlaAspTrpGlnThrValThrArgGluLysAspGlnTrpValMetLeuLysA : 132 :!:....!!! !:::!! !||| ! ! !:!|||!:: :!!||||||||| LeuSerThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysT 304414 : CTCTCTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAAT : 304471 133 : snAlaLysPheGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnSerGlyIl : 151 !!!.!:!!.!.|||||| !!:!!.!! !! !||||||||||||||| ! !!!||| yrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGl 304472 : ACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGG : 304528 152 : eMetCysPheIlePheValAlaAlaMetAspThrValGluIleGlnIleGlyAsnGlu : 170 !! !!:! ! ||| ! !.!.! ||| ! !! ! :!:! !.!. ! yThrIleTyrHisThrValMetGlnPheAlaThr---GlyThrTyrValAspGluTyr 304529 : CACCATTTATCACACGGTCATGCAGTTCGCGACC---GGAACGTATGTGGATGAGTAT : 304582 171 : ThrArgIleLeuHisValLeuProCysAlaValTyrLysLysLeuIleAsnValAspG : 190 !.!|||! :!! ! !||| !! ! !!..!|||!.. |||.!!:!!|||.!. AsnArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnT 304583 : AATCGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAA : 304642 191 : luSerProThrAsnGluIleMetLeuPheLeuGlnAlaTrpCysThrMetIleAlaAs : 209 !||||||! ! !!|||:!::!:! !|||:!!!!...! !||| ! :!! ! ! hrSerProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTy 304643 : CAAGCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTA : 304699 210 : nSerSerThrValGlyMetPheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGly : 228 !|||! !|||!.!||| ! !.!!|||||||||:!!!!!|||.!!|||||||||||| rSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGly 304700 : TTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGA : 304756 229 : GlnLeuAsnValValMetValTrpIleThrGluPheValAsnGluProLysLysThrA : 248 |||:!!:!!:!!|||||| ! ! :!: !!!:.!!||||||... !:!!..!:!!| GlnIleAspIleValMetSerArgLeuGlyAspLeuValAsnSerLysGluSerSerA 304757 : CAAATTGATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCATCTG : 304816 249 : spGlyProAsnSerIleGlyValIleValGluArgHisLeuArgThrLeu{As} >> : 265 || ! !!!. !!:!! !! !|||||||||!.!|||||||||! !|||{!.} spLeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIleLeu{Ar}++ 304817 : ATTTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTA{AG}gt.. : 304871 266 : >> Target Intron 1 >>>> {n}PheIleGlyTyrIleGluAsnLeuMetAsn : 275 140 bp {.}!:!:!! |||:!:.!.!.! !:!: ! -+{g}TyrVal---TyrLeuAsnThrThrVal*** 304872 : .......................tg{A}TATGTC---TACTTGAATACTACTGTATAA : 305034 276 : ArgIleTyrPheLeuGluIlePheArgCysThrMetAspIleCysIleLeuGlyTyrT : 295 ||| ! |||! !.!..!! !! !||||||:!! ! :!!||||||::: ArgCysValPheTyrAsnPhe------***LeuMetAspLeuGlyValLeuGlyPheI 305035 : CGGTGCGTGTTTTATAACTTT------TGACTAATGGACTTAGGAGTTCTTGgtttta : 305088 296 : yrIleLeuSerGluTrpAlaAspGln-AsnValGlnSerLeuIleThrTyrIleMetI : 314 ...::::::! !! !!.!!!:|||#|||..! ||||||! !||||||! !:!!: lePheValThrGlyLeuGlyGluGln#AsnThrValSerLeuThrThrTyrThrValL 305089 : tatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGT : 305146 315 : leTyrIleSerIleGlyPheAsnValPheLeuIleCysTyrIleGlyGluIleLeuTh : 333 !! ||||||:!! !||||||:!!|||:!!:!!|||||||||||||||||||||! euLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMe 305147 : TACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTAT : 305203 334 : rGluGln >>>> Target Intron 2 >>>> SerLysLysValGlyGluValV : 343 !|||:!! 413 bp |||!..!..|||||| ! ! tGluLys++ ++SerSerSerValGlyLeuSerC 305204 : GGAAAAGgt.........................agAGCAGTAGCGTTGGATTATCCT : 305646 344 : alTyrMetThrAsnTrpTyrTyrLeuProAspLysThrIleLeuAspLeuIleLeuIl : 362 !!:!|||! !!:!||||||:!!|||||| !|||||||||! !! !||||||||||| ysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleLeuIl 305647 : GTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTTTAAT : 305703 363 : eIleAlaArgSerGlyValValValGlnIleThrAlaGlyLysMetValHisMetSer : 381 |||||||! !|||.!! ! !!.!:!!|||!:!|||||||||:!:||| !!:!:||| eIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysValValAspLeuSer 305704 : CATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTATCT : 305760 382 : ValTyrThrPheGlyAspVal : 388 :!!! !|||||||||:!!||| LeuSerThrPheGlyAsnVal 305761 : TTATCCACATTTGGAAACGTG : 305783 vulgar: gi|350396511|ref|XP_003484578.1| 112 388 . KQ414889.1 304413 305783 + 369 M 50 150 G 1 0 M 101 303 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 2 6 G 1 0 M 14 42 G 2 0 M 19 57 F 0 1 M 32 96 5 0 2 I 0 409 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304414 305783 369 + . gene_id 14 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 304414 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304414 304868 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 305008 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305007 305008 . + . intron_id 0 ; splice_site "TG" KQ414889.1 exonerate:protein2genome:local cds 305009 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305009 305211 . + . insertions 0 ; deletions 3 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304414 305783 369 + . alignment_id 14 ; Query gi|350396511|ref|XP_003484578.1| ; Align 304414 113 150 ; Align 304564 164 303 ; Align 305010 266 6 ; Align 305016 269 42 ; Align 305058 285 57 ; Align 305116 304 96 ; Align 305625 336 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 365 Query range: 298 -> 403 Target range: 272836 -> 273302 299 : GluTrpAlaAspGlnAsnValGlnSerLeuIleThrTyrIleMetIleTyrIleSerI : 318 ||||||.!!|||!!.:!! !!|||||||||! !||||||.!!|||||| !||||||! GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 319 : leGlyPheAsnValPheLeuIleCysTyrIleGlyGluIleLeuThrGluGln >>> : 336 !: ||||||:::|||:::::!|||||||||||||||||||||||||||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 337 : > Target Intron 1 >>>> SerLysLysValGlyGluValValTyrMetThrA : 347 70 bp ||||||:::|||||||||||||||||||||| ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 348 : snTrpTyrTyrLeuProAspLysThrIleLeuAspLeuIleLeuIleIleAlaArgSe : 366 |||||||||||||||||! !||| !||||||||||||||||||||||||:!!|||!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 367 : rGlyValValValGlnIleThrAlaGlyLysMetValHisMetSerValTyrThrPhe : 385 !.!!||||||:!!:!!||||||||||||!:!!!:|||! !|||||||||||||||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 386 : GlyAsp >>>> Target Intron 2 >>>> ValValLysThrGlyPheAlaTy : 395 |||||| 81 bp |||:!!|||!:!!.!|||||||| GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 396 : rLeuAsnLeuLeuArgGlnMetThr : 403 |||||||:!!|||||||||! !||| rLeuAsnMetLeuArgGlnThrThr 273277 : CTTAAATATGCTACGACAAACGACA : 273302 vulgar: gi|350396511|ref|XP_003484578.1| 298 403 . KQ414889.1 272836 273302 + 365 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273302 365 + . gene_id 15 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273302 365 + . alignment_id 15 ; Query gi|350396511|ref|XP_003484578.1| ; Align 272837 299 111 ; Align 273018 336 156 ; Align 273255 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 345 Query range: 298 -> 403 Target range: 254071 -> 254567 299 : GluTrpAlaAspGlnAsnValGlnSerLeuIleThrTyrIleMetIleTyrIleSerI : 318 ||||||.!!!!:...:!!!.!|||! !|||.!!|||||||||:!:! ! !:!!:!!: GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaV 254072 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTG : 254129 319 : leGlyPheAsnValPheLeuIleCysTyrIleGlyGluIleLeuThrGluGln >>> : 336 !!! ! |||...||||||||||||||||||.!!!!:! |||||||||||| alValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 254130 : TTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt... : 254185 337 : > Target Intron 1 >>>> SerLysLysValGlyGluValValTyrMetThrA : 347 92 bp !!! !|||||||||||||||||||||||||||: ++CysLeuLysValGlyGluValValTyrMetThrA 254186 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 254308 348 : snTrpTyrTyrLeuProAspLysThrIleLeuAspLeuIleLeuIleIleAlaArgSe : 366 !!|||||||||||||||.!.!:!! !||||||||||||||||||||||||.!!||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSe 254309 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATC : 254365 367 : rGlyValValValGlnIleThrAlaGlyLysMetValHisMetSerValTyrThrPhe : 385 |..!|||||||||:!!|||||||||||||||::: |||||||||:!!||||||||| rAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPhe 254366 : GAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTC : 254422 386 : GlyAsp >>>> Target Intron 2 >>>> ValValLysThrGlyPheAlaTy : 395 |||||| 89 bp ||||||||||||||||||||||| GlyAsp++ ++ValValLysThrGlyPheAlaTy 254423 : GGCGATgt.........................agGTAGTAAAAACAGGATTCGCCTA : 254541 396 : rLeuAsnLeuLeuArgGlnMetThr : 403 |||||||:!!||| !!||||||:!! rLeuAsnMetLeuCysGlnMetSer 254542 : CTTGAATATGCTTTGTCAAATGTCC : 254567 vulgar: gi|350396511|ref|XP_003484578.1| 298 403 . KQ414889.1 254071 254567 + 345 M 37 111 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254072 254567 345 + . gene_id 16 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254072 254182 . + . KQ414889.1 exonerate:protein2genome:local exon 254072 254182 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254183 254184 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254183 254274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254273 254274 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254275 254430 . + . KQ414889.1 exonerate:protein2genome:local exon 254275 254430 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254431 254432 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254431 254519 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 254518 254519 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254520 254567 . + . KQ414889.1 exonerate:protein2genome:local exon 254520 254567 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254072 254567 345 + . alignment_id 16 ; Query gi|350396511|ref|XP_003484578.1| ; Align 254072 299 111 ; Align 254275 336 156 ; Align 254520 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 318 Query range: 16 -> 242 Target range: 226927 -> 227605 17 : AspTyrGlyLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProSerP : 36 :!! .!!:!!|||||||||||||||.!.|||||||||:!!|||:!!|||||||||! AsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerS 226928 : AACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGT : 226985 37 : heProSerThrThrArgPheGluLysIleValSerIleThrLeuAsnValIleCysTy : 55 ! !!.!!:!:!!|||.!.! !!:! ! !!||| !:!!..! !!:!!||||| erArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTy 226986 : CGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTA : 227042 56 : rSerSerIleIleLeuThrThrIleProCysLeuValArgMetPheLeuGluAspGlu : 74 |:!! !!!:! !!!! ! !:!! !! !! !:!! !:!! !!||||||! :!! rAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLys 227043 : CGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAA : 227099 75 : SerIleTyrLeuLysLeuLysSerLeuGlyProValSerHisTrpIleValSerGlyA : 94 .!! !||| !! !||||||! !:!!||||||:!!||| !!:: :!!||| ! GlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuL 227100 : GGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCC : 227159 95 : laAsnTyrThrThrLeuLeuLeuArgSerLysAspIleArgGlnCysMetGluHisMe : 113 !!!.|||:!!! !||| !!!!!.!..! ! ||||||! !:!!|||:!:|||!..!! euLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIl 227160 : TCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGAT : 227216 114 : tGluAlaAspTrpGlnThrValThrArgGluLysAspGlnTrpValMetLeuLysAsn : 132 ::!! !||||||:!!!.!:!!! ! ! !:!!|||::! ||||||:!!! ! !! eLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyr 227217 : CAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTAC : 227273 133 : AlaLysPheGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnSerGlyIleM : 152 ||| ! !:!|||||| ! :!! !.!!! !|||.!!.!!|||:!: |||......: AlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheV 227274 : GCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcg : 227333 153 : etCysPheIlePheValAlaAlaMetAspThrValGluIleGlnIleGlyAsnGluTh : 171 :: ||| .!!|||!.! !!!!::!!.!!! !...:!! !! ! !:!!! !!. alPhePheTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGlyAs 227334 : tatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAA : 227390 172 : rArgIleLeuHisValLeuProCysAlaValTyrLysLysLeuIleAsnValAspGlu : 190 !!.!! !! ! ! !:!!|||! ! !! !! |||! :!! !:!!||| ! ! nHisSerTyrIleGlnMetProPheProPheProLysIleIleAlaAspValArgTyr 227391 : CCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTAC : 227447 191 : SerProThrAsnGluIleMetLeuPheLeuGlnAlaTrpCysThrMetIleAlaAsnS : 210 |||||| !|||||||||.!.!!!! :!!||| ! !!!::!: !:!!. SerProPheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuHisG 227448 : AGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACG : 227507 211 : erSerThrValGlyMetPheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGlyGl : 229 !! !||| !!.! ! !|||:!!||||||:!!||||||!.!|||||||||||||| lyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGl 227508 : GTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCA : 227564 230 : nLeuAsnValValMetValTrpIleThrGluPheValAsn : 242 |:!!.!.|||:!!:!! !|||:!: !.!.!!.:!!:!! nMetGluValLeuValSerTrpLeuGlyHisLeuIleAsp 227565 : GATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGAC : 227605 vulgar: gi|350396511|ref|XP_003484578.1| 16 242 . KQ414889.1 226927 227605 + 318 M 226 678 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226928 227605 318 + . gene_id 17 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226928 227605 . + . KQ414889.1 exonerate:protein2genome:local exon 226928 227605 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226928 227605 318 + . alignment_id 17 ; Query gi|350396511|ref|XP_003484578.1| ; Align 226928 17 678 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 286 Query range: 298 -> 391 Target range: 244441 -> 244826 299 : GluTrpAlaAspGlnAsnValGlnSerLeuIleThrTyrIleMetIleTyrIleSerI : 318 |||||||||!!:...:!!!.!:!!! !||||||||||||.!!!!: ! !:!!:!!| GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheIleAlaLeuValAlaI 244442 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTATAGCACTCGTTGCTA : 244499 319 : leGlyPheAsnValPheLeuIleCysTyrIleGlyGluIleLeuThrGluGln >>> : 336 ||! !! !|||..!|||:!!:!!|||||||||.!!!!:! |||||||||||| leValSerAsnThrPheIleLeuCysTyrIleSerAspArgLeuThrGluGln++ 244500 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGACAGGCTGACAGAACAGgt... : 244555 337 : > Target Intron 1 >>>> SerLysLysValGlyGluValValTyrMetThrA : 347 106 bp !!! !|||||||||||||||||||||||||||: ++CysLeuLysValGlyGluValValTyrMetThrA 244556 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 244692 348 : snTrpTyrTyrLeuProAspLysThrIleLeuAspLeuIleLeuIleIleAlaArgSe : 366 !!|||||||||||||||.!.!:!! !|||||||||||||||||||||||| !||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSe 244693 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATC : 244749 367 : rGlyValValValGlnIleThrAlaGlyLysMetValHisMetSerValTyrThrPhe : 385 |..!:!!||||||:!!|||||||||||||||:!::!!|||||||||:!!||||||||| rAsnMetValValGluIleThrAlaGlyLysValLeuHisMetSerLeuTyrThrPhe 244750 : GAACATGGTCGTTGAAATCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTC : 244806 386 : GlyAspValValLysThr : 391 ||||||||| !:!!||| GlyAspValSerGluThr 244807 : GGCGATGTAAGTGAAACT : 244826 vulgar: gi|350396511|ref|XP_003484578.1| 298 391 . KQ414889.1 244441 244826 + 286 M 37 111 5 0 2 I 0 102 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244442 244826 286 + . gene_id 18 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244442 244552 . + . KQ414889.1 exonerate:protein2genome:local exon 244442 244552 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244553 244554 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244553 244658 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244657 244658 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244659 244826 . + . KQ414889.1 exonerate:protein2genome:local exon 244659 244826 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244442 244826 286 + . alignment_id 18 ; Query gi|350396511|ref|XP_003484578.1| ; Align 244442 299 111 ; Align 244659 336 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 285 Query range: 298 -> 388 Target range: 283096 -> 283438 299 : GluTrpAlaAspGlnAsnValGlnSerLeuIleThrTyrIleMetIleTyrIleSerI : 318 ||||||:!!||| :!!||||||!!!:!!! !|||:!!.!!|||||| !||||||! GluTrpSerAspGlyAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 283097 : GAATGGTCTGACGGCGATGTTCAGACTATGACTACGCATTTCATGATCCTTATATCCA : 283154 319 : leGlyPheAsnValPheLeuIleCysTyrIleGlyGluIleLeuThrGluGln >>> : 336 !: ||||||:::||| !:!!! !|||||||||:!!||||||||||||||| etCysPheAsnIlePheThrValTyrTyrIleGlyLysIleLeuThrGluGln++ 283155 : TgtgtttcaacatttttacAGTATACTATATCGGGAAAATACTAACTGAACAGgt... : 283210 337 : > Target Intron 1 >>>> SerLysLysValGlyGluValValTyrMetThrA : 347 72 bp !!!||||||||||||||||||||||||||||||| ++CysLysLysValGlyGluValValTyrMetThrA 283211 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 283313 348 : snTrpTyrTyrLeuProAspLysThrIleLeuAspLeuIleLeuIleIleAlaArgSe : 366 ||! !!:!||||||||||||||| !||||||:!!|||:!!|||||||||:!!||||| sn***PheTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 283314 : ATTAGTTTTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 283370 367 : rGlyValValValGlnIleThrAlaGlyLysMetValHisMetSerValTyrThrPhe : 385 |.!!:::|||::::::|||||||||...|||::::::...||||||!.!||||||||| rSerLeuValIleLysIleThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPhe 283371 : TAGCctggtaattaaaattaccgctagcaaattaattcaaatGTCCGCGTACACGTTC : 283427 386 : GlyAspVal : 388 ! !|||||| AspAspVal 283428 : GACGATGTA : 283438 vulgar: gi|350396511|ref|XP_003484578.1| 298 388 . KQ414889.1 283096 283438 + 285 M 37 111 5 0 2 I 0 68 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283097 283438 285 + . gene_id 19 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 283097 283207 . + . KQ414889.1 exonerate:protein2genome:local exon 283097 283207 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 283208 283209 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 283208 283279 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 283278 283279 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 283280 283438 . + . KQ414889.1 exonerate:protein2genome:local exon 283280 283438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283097 283438 285 + . alignment_id 19 ; Query gi|350396511|ref|XP_003484578.1| ; Align 283097 299 111 ; Align 283280 336 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 265 Query range: 17 -> 245 Target range: 278576 -> 279269 18 : TyrGlyLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProSerPheP : 37 |||.!!:!!|||:!!|||||||||||||||||||||||||||||||||||| ! !! TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 38 : roSerThrThrArgPheGluLysIleValSerIleThrLeuAsnValIleCysTyrSe : 56 !!!!..!|||! !!!.||||||||| !|||:!:..!||| :!!||| !!! !! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 57 : rSerIleIleLeuThrThrIleProCysLeuValArgMetPheLeuGluAspGlu<-> : 75 ! !||| !!!! ! !:!!|||||| !:!! !!! ! |||!!: ! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 76 : SerIleTyrLeuLysLeuLysSerLeuGlyProValSerHisTrpIleValSerGlyA : 94 ..!:!! !! !|||:!!|||! !:!!||||||:!!||| !!! ! :!!:!! ! AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 95 : laAsnTyrThrThrLeuLeuLeuArgSerLysAspIleArgGlnCysMetGluHisMe : 113 !!!.||| !! !|||:!!! !|||.!! ! ||| !!:!!|||:!!.!. !!!! leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 114 : tGluAlaAspTrpGln<-><-><->ThrValThrArgGluLysAspGlnTrpValMet : 129 :....!!||||||... :!! ! :::|||::::::::: :::||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 130 : LeuLysAsnAlaLysPheGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnS : 149 ! ! !:!|||!:!.!!||||||! !:!!||| !! ! !!||| !|||||| ! | ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 150 : erGlyIleMetCysPheIlePheValAlaAlaMetAspThrValGluIleGlnIleGl : 168 ||||| !:!:! !!:!! ! !||| ! !!:!! !.!!|||...! :!!||| erGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIle-- 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATC-- : 279039 169 : yAsnGluThrArgIleLeuHisValLeuProCysAlaValTyrLysLysLeuIleAsn : 187 ! !!!:!.!..!! :!!... !! ! !!! ! !!:!!|||::: |||:!!:!! -IleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAsp 279040 : -ATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGAT : 279093 188 : ValAspGluSerProThrAsnGluIleMetLeuPheLeuGlnAlaTrpCysThrMetI : 207 ! ! ||||||:!! !||||||:!!! !|||:!!|||..!! !..!.!!.!.: ProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheV 279094 : CCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCG : 279153 208 : leAlaAsnSerSerThrValGlyMetPheSerLeuAlaAlaValLeuAlaAlaHisAl : 226 !! ! !!||| !||||||||| ! !|||||| !||||||!!!!.! !|||!. alLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisVa 279154 : TTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGT : 279210 227 : aCysGlyGlnLeuAsnValValMetValTrpIleThrGluPheValAsnGluProLys : 245 !|||||||||!!!!..:!!:!!:!!..! !:!: !:!!.!!:!!:!!! ! !||| lCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLys 279211 : CTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAA : 279267 vulgar: gi|350396511|ref|XP_003484578.1| 17 245 . KQ414889.1 278576 279269 + 265 M 57 171 G 0 3 M 44 132 G 0 9 M 49 147 G 1 0 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 279269 265 + . gene_id 20 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278577 279269 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279269 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278577 279269 265 + . alignment_id 20 ; Query gi|350396511|ref|XP_003484578.1| ; Align 278577 18 171 ; Align 278751 75 132 ; Align 278892 119 147 ; Align 279039 169 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 248 Query range: 334 -> 401 Target range: 264723 -> 265004 335 : GlnSerLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAspL : 354 |||!!!|||||||||||||||||||||||||||:!!|||||||||||||||||| !!| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 355 : ysThrIleLeuAspLeuIleLeuIleIleAlaArgSerGlyValValValGlnIleTh : 373 || !|||||||||||||||||||||||| !||||||.!!|||||| !!:!!.!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 374 : rAlaGlyLysMetValHisMetSerValTyrThrPheGlyAsp >>>> Target I : 388 ||||||||||!!::!!|||||||||:!!|||||||||.!!||| 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 389 : ntron 1 >>>> ValValLysThrGlyPheAlaTyrLeuAsnLeuLeuArgGln : 401 bp |||:!!|||:!!..!|||.!!||||||||||||||||||||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArgGln 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGCCAA : 265004 vulgar: gi|350396511|ref|XP_003484578.1| 334 401 . KQ414889.1 264723 265004 + 248 M 53 159 5 0 2 I 0 76 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265004 248 + . gene_id 21 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265004 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265004 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265004 248 + . alignment_id 21 ; Query gi|350396511|ref|XP_003484578.1| ; Align 264724 335 159 ; Align 264963 388 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 243 Query range: 17 -> 232 Target range: 289735 -> 290377 18 : TyrGlyLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpPro<->SerP : 36 ||| !!!!:!!||| !!.!|||.!!|||||||||||||||:!!!::||| !| TyrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrProPheValP 289736 : TACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCT : 289793 37 : heProSerThrThrArgPheGluLysIleValSerIleThrLeuAsnValIleCysTy : 55 || ! !!.!!!:!||| !|||::!! !.!|||:!: !|||! !:!!:!!|||! heSerArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLeuValCysCy 289794 : TTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTG : 289850 56 : rSerSerIleIleLeuThrThrIleProCysLeuValArgMetPheLeuGluAspGlu : 74 !|||! !:!! !!!! !! !:!!|||! ! ! !!.!:!:.!.!!!...|||.!. sSerIleLeuGlnPheIleIleValProPheSerHisHisValLeuPheSerAspAsn 289851 : CTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAAC : 289907 75 : SerIleTyrLeuLysLeuLysSerLeuGlyProValSerHisTrpIleValSerGlyA : 94 ..!!!: !! ! :!!|||!:!|||||||||:!!!!! !!! :!:..!!!! ! AspMetAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuThrThrPheP 289908 : GACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCT : 289967 95 : laAsnTyrThrThrLeuLeuLeuArgSerLysAspIleArgGlnCysMetGluHisMe : 113 !!!.||| ! !!!! !:!!!:!.!!..!! ||| !!!::|||:!!:!!|||!! heLysTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysValLysHisIl 289968 : TCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACAT : 290024 114 : tGluAlaAspTrpGlnThrValThrArgGluLysAspGlnTrpValMetLeuLysAsn : 132 :||| !||||||:!!! !:!! ! !||| ! !!!:: :!!||||||!:! !! eGluArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMetLeuArgTyr 290025 : CGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATAC : 290081 133 : AlaLysPheGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnSerGlyIleM : 152 !.!! !.!..!!||| !!:!! ! ! !||||||||||||:!! ! ! !||| !: ValThrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyL 290082 : GTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTC : 290141 153 : etCysPheIlePheValAlaAlaMetAspThrValGluIleGlnIleGlyAsnGluTh : 171 !!! !!:!! ! !||| ! !!:!! !:!! !:!!! ! !! !||||||! !|| euSerTyrAsnThrValIleProLeuPheSerLysLysSerValAsnGlyAsnValTh 290142 : TGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGGTAACGTGAC : 290198 172 : rArgIleLeuHisValLeuProCysAlaValTyrLysLysLeuIleAsnValAspGlu : 190 | :!!... !||| !!! ! !!! !|||:!!:!!!!!.!!:!!|||.!.:!! r------IleArgProLeuThrTyrProGlyTyrGluGluPhePheAspValGlnLys 290199 : T------ATCAGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAG : 290249 191 : SerProThrAsnGluIleMetLeuPheLeuGlnAlaTrpCysThrMetIleAlaAsnS : 210 ||||||.!! !!||||||:!:!!!! !:!!!!...! ! !..!||||||.!! ! SerProAlaTyrGluIleValPheCysMetHisCysValTyrValMetIleThrAlaA 290250 : AGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGA : 290309 211 : erSerThrValGlyMetPheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGlyGl : 229 :!! !|||:!!!.! !!:!||||||.!!.!!:!!!!!|||.!!|||.!!|||||||| snIleThrMetAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGl 290310 : ACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCA : 290366 230 : nLeuAsnVal : 232 |:!!!!.:!! nIleLysIle 290367 : GATTAAGATA : 290377 vulgar: gi|350396511|ref|XP_003484578.1| 17 232 . KQ414889.1 289735 290377 + 243 M 17 51 G 0 3 M 137 411 G 2 0 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289736 290377 243 + . gene_id 22 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289736 290377 . + . KQ414889.1 exonerate:protein2genome:local exon 289736 290377 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289736 290377 243 + . alignment_id 22 ; Query gi|350396511|ref|XP_003484578.1| ; Align 289736 18 51 ; Align 289790 35 411 ; Align 290201 174 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 202 Query range: 18 -> 197 Target range: 294690 -> 295227 19 : GlyLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpPro<->SerPheP : 37 .!!|||:!!! ! !||| !!.!.|||||||||||||||:!!|||||| ! !!:! SerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrS 294691 : AGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACA : 294748 38 : roSerThrThrArgPheGluLysIleValSerIleThrLeuAsnValIleCysTyrSe : 56 ! !|||!:!!:!.!..!.|||:!!:!!||||||! !|||! !!.! ||| ! erHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLe 294749 : GTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTT : 294805 57 : rSerIleIleLeuThrThrIleProCysLeuValArgMetPheLeuGluAspGluSer : 75 !!!!:!!:!:!!!..! !:!:|||||| ! ! ! ! !!!.!.! :::::: uThrValLeuPheValLeuValProCysGlyTyrPheCysValPheHisValLysAsn 294806 : GACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaac : 294862 76 : IleTyrLeuLysLeuLysSerLeuGlyProValSerHisTrpIleValSerGlyAlaA : 95 ::: ||||||:!!||| !|||||||||||| !:!!! !!::!!||| ! !! ValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuA 294863 : gtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCA : 294922 96 : snTyrThrThrLeuLeuLeuArgSerLysAspIleArgGlnCysMetGluHisMetGl : 114 ..|||!:! !|||:!!|||!:!!!! ! .!!!:!!!.|||!!:||| !!!!:|| rgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCysIleGluAspIleGl 294923 : GGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGA : 294979 115 : uAlaAspTrpGlnThrValThrArgGluLysAspGlnTrpValMetLeuLysAsnAla : 133 | !||||||:!! !:!! !!.! !:!! !!!:! !:!!|||:!!||||||||| uAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIleMetIleLysAsnAla 294980 : GAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCG : 295036 134 : LysPheGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnSerGlyIleMetC : 153 ! ! !! !!:! :!!.!!!.!:!!! !.!!|||.!.!!: ! |||..! :!!! MetValThrGlnArgMetThrValAlaPheThrIleIleIleTyrSerSerAlaValS 295037 : ATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGT : 295096 154 : ysPheIlePheValAlaAlaMetAspThrValGluIleGlnIleGlyAsnGluThrAr : 172 !:! ! !:!!!.. ... ::: :!::!! ..!!!.:!!!.!!. erTyrHisAlaIleValProPhePheSerAsnAlaLeuGlu---AsnLysLysAsnAs 295097 : CGTATCACGCCATTGtgccatttttttcaaacgctTTGGAG---AACAAGAAGAATAA : 295150 173 : gIleLeuHisValLeuProCysAlaValTyrLysLysLeuIleAsnValAspGluSer : 191 !! :!!!.!!.!|||||| ! !!! !|||:!! !!!!:!!:!!!.! !!...||| nThrIleArgAlaLeuProIleProGlyTyrGluLeuPheValAspAlaTyrSerSer 295151 : TACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGT : 295207 192 : ProThrAsnGluIleMet : 197 |||||| !!||||||!!: ProThrTyrGluIleIle 295208 : CCTACCTACGAGATCATA : 295227 vulgar: gi|350396511|ref|XP_003484578.1| 18 197 . KQ414889.1 294690 295227 + 202 M 16 48 G 0 3 M 132 396 G 1 0 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294691 295227 202 + . gene_id 23 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294691 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294691 295227 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294691 295227 202 + . alignment_id 23 ; Query gi|350396511|ref|XP_003484578.1| ; Align 294691 19 48 ; Align 294742 35 396 ; Align 295138 168 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 198 Query range: 181 -> 350 Target range: 300222 -> 301842 182 : TyrLysLysLeuIleAsnValAspGluSerProThrAsnGluIleMetLeuPheLeuG : 201 ||| ! !!!!|||:!!..!.!. ||||||||| !!||||||:::...|||.... TyrAspTrpPheIleAspThrGlnThrSerProThrTyrGluIleValPhePhePheH 300223 : TACGATTGGTTTATCGATACACAAACCAGTCCTACCTACGAgatcgtatttttctttc : 300280 202 : lnAlaTrpCysThrMetIleAlaAsnSerSerThrValGlyMetPheSerLeuAlaAl : 220 .....:::....!!|||||| ! !!!:! !|||..!!.! !!:!||||||||||| isCysPheAlaAlaMetIleMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAl 300281 : actgttTCGCAGCGATGATCATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGC : 300337 221 : aValLeuAlaAlaHisAlaCysGlyGlnLeuAsnValValMetValTrpIleThrGlu : 239 |:!!!!!!.!.!!||| !|||||||||:!!.!.:!! !|||!.! ! :!: !!!: aIlePheValThrHisIleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAsp 300338 : GATATTCGTCACTCATATCTGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGAT : 300394 240 : PheValAsnGluPro<->LysLysThrAspGlyProAsnSerIleGlyValIleValG : 258 .!.|||.!...! !! :!!||| !|||||||||:!! !!:!:! !|||||||||. LeuValGluArgThrGlyGluLysAspAspGlyProAspProLeuValValIleValA 300395 : CTGGTGGAGAGGACGGGAGAGAAGGACGACGGTCCTGATCCTTTGGTCGTTATCGTTC : 300454 259 : luArgHisLeuArgThrLeu{As} >>>> Target Intron 1 >>>> {n}Ph : 266 .! !|||:!!!:!..!|||{!.} 1110 bp {.} rgAspHisValLysValLeu{Ar}++ ++{g}As 300455 : GAGATCACGTGAAGGTTTTA{AG}gt.........................ag{A}GA : 301588 267 : eIleGlyTyrIleGluAsnLeuMetAsnArgIleTyrPheLeuGluIlePheArgCys : 285 ! !!! !.!!... ! ! !! !!.!:!!! ! ::: |||... pProCysSerPheArg***ProThrPheHisLeuCysAlaValIleLysPheGluSer 301589 : CCCGTGTTCCTTCCGTTAGCCAACTTTTCATCTCTGCgctgtaattaaatttgaatct : 301645 286 : ThrMetAspIleCysIleLeuGlyTyrTyrIleLeuSerGluTrpAlaAspGlnAsnV : 305 |||:!::!! ! .!!||| !! ! !!!!! !|||||| !:!!...:!!. ThrLeuAsnAlaLysPheLeuArgValIle***Phe***GluTrpGlnAsnSerAspT 301646 : ACTTTAAATGCAAAGTTTTTACGAGTAATTTGATTTTAGGAATGGCAAAATAGCGACA : 301705 306 : alGlnSerLeuIleThrTyrIleMetIleTyrIleSerIleGlyPheAsnValPheLe : 324 .! :!!:!!:!:|||!:!.!!! :!:! ! |||.!! !||||||:!!|||:! hrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAsnIlePheIl 301706 : CGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATATTCAT : 301762 325 : uIleCysTyrIleGlyGluIleLeuThrGluGlnSerLysLysValGlyGluValVal : 343 !.!!|||||||||||||||||||||:!!|||||| ! ! !.!!..! ePheCysTyrIleGlyGluIleLeuSerGluGlnValLeuThrTyrSerArgSerPhe 301763 : ATTCTGCTACATCGGCGAGATTCTTTCCGAACAGGTACTTACTTACAGTAGAagtttc : 301819 344 : TyrMetThrAsnTrpTyrTyr : 350 :::... ::: !|||!:! HisPhePheSerMetTyrPhe 301820 : catttcttttcaatGTATTTC : 301842 vulgar: gi|350396511|ref|XP_003484578.1| 181 350 . KQ414889.1 300222 301842 + 198 M 63 189 G 0 3 M 20 60 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300223 301842 198 + . gene_id 24 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300223 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300223 300476 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301842 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300223 301842 198 + . alignment_id 24 ; Query gi|350396511|ref|XP_003484578.1| ; Align 300223 182 189 ; Align 300415 245 60 ; Align 301588 266 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 191 Query range: 298 -> 388 Target range: 206050 -> 206401 299 : GluTrpAlaAspGlnAsnValGlnSerLeuIleThrTyrIleMetIleTyrIleSerI : 318 ||||||! !:!!.!.|||..! !:!!:!!|||..!||||||! !:!: ! |||||| GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 319 : leGlyPheAsnValPheLeuIleCysTyrIleGlyGluIleLeuThrGluGln >>> : 336 ! !||| !||||||:!!:!!||||||||||||:!!:!!|||! !!!:||| ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 337 : > Target Intron 1 >>>> SerLysLysValGlyGluValValTyrMetThrA : 347 81 bp !:! ! |||||| !..! !! !! !..!| ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 348 : snTrpTyrTyrLeuProAspLysThrIleLeuAspLeuIleLeuIleIleAlaArgSe : 366 |||||||| !||||||:!!!:! ! ! !..!:!!|||||||||||||||! !|| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 367 : rGlyValValValGlnIleThrAlaGlyLysMetValHisMetSerValTyrThrPhe : 385 |..! ! !:!!:!!:!!||||||||||||||| !!.!.||||||:!! !!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 386 : GlyAspVal : 388 !|||||| ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: gi|350396511|ref|XP_003484578.1| 298 388 . KQ414889.1 206050 206401 + 191 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 191 + . gene_id 25 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 191 + . alignment_id 25 ; Query gi|350396511|ref|XP_003484578.1| ; Align 206051 299 111 ; Align 206243 336 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 298 -> 398 Target range: 280091 -> 280465 299 : GluTrpAlaAspGlnAsnValGlnSerLeuIleThrTyrIleMetIleTyrIleSerI : 318 ||||||! !.!..!.:!!!.! !.!! !.!!||||||:!!|||.!! !||||||: GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerL 280092 : GAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTT : 280149 319 : leGlyPheAsnValPheLeuIleCysTyrIleGlyGluIleLeuThrGlu{G} >>> : 335 !! !||||||||||||:!!:!!|||||||||||||||||||||:!!|||{|} euThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGlu{G}-- 280150 : TAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAA{C}ag... : 280203 336 : > Target Intron 1 >>>> {ln}SerLysLysValGlyGluValValTyrMet : 345 74 bp {||}!!! !|||||||||! ! !..!|||||| +-{ln}CysLeuLysValGlyValSerThrTyrMet 280204 : ......................at{AG}TGCTTAAAAGTCGGCGTGTCAACTTACATG : 280304 346 : ThrAsnTrpTyrTyrLeuProAspLysThrIleLeuAspLeuIleLeuIleIleAlaA : 365 ! !:!!|||||| !||||||! |||! ! !! !! !||||||||||||.!!||| IleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaV 280305 : ATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCG : 280364 366 : rgSerGlyValValValGlnIleThrAlaGlyLysMetValHisMetSerValTyrTh : 384 !|||..! ! !:!!:!!:!!||||||||||||!!::!! !!:!:|||:!! !!: alSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSe 280365 : TGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAG : 280421 385 : rPheGlyAspValValLysThrGlyPheAlaTyrLeuAsnLeu : 398 !||| !!..!||| !! ! !..!!!.:!!|||! !:!!||| rPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280422 : CTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: gi|350396511|ref|XP_003484578.1| 298 398 . KQ414889.1 280091 280465 + 175 M 36 108 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280092 280465 175 + . gene_id 26 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280092 280200 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280200 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280201 280202 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local intron 280201 280274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280273 280274 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 280275 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280275 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280092 280465 175 + . alignment_id 26 ; Query gi|350396511|ref|XP_003484578.1| ; Align 280092 299 108 ; Align 280277 336 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 173 Query range: 17 -> 116 Target range: 299689 -> 299989 18 : TyrGlyLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProSerPheP : 37 ||| !||||||:!! !!:!|||!!.|||||||||||||||||||||! !! !.!. TyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpArgLeuLeuA 299690 : TACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGCGATTGCTAG : 299747 38 : roSer<->ThrThrArgPheGluLysIleValSerIleThrLeuAsnValIleCysTy : 55 !..! :!!!:!!:!.!.||| ! :!!|||||||||..!|||! ..!||||||!: spGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMetThrIleCysPh 299748 : ATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATGACAATATGCTT : 299804 56 : rSerSerIleIleLeuThrThrIleProCysLeuValArgMetPheLeuGluAspGlu : 74 !||||||:!:.!!!!!! !..!:!:|||! ! ! ! !!!:|||!!!! !!!::!! eSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePhePheAlaGluLys 299805 : CTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCTTCGCGGAGAAA : 299861 75 : SerIleTyrLeuLysLeuLysSerLeuGlyProValSerHisTrpIleValSerGlyA : 94 ||||||:!!:!!|||:!!||| !!!!|||||||||.!! !!! :!! !||| !! SerIleHisValLysValLysValPheGlyProValGlyPheCysLeuSerSerIleV 299862 : AGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCATCG : 299921 95 : laAsnTyrThrThrLeuLeuLeuArgSerLysAspIleArgGlnCysMetGluHisMe : 113 .!!!.||| ! !|||! !|||!.!.!! ! .!!..!!:!|||!!::!!|||:! alLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCysIleGlnHisVa 299922 : TCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGCATCCAACACGT : 299978 114 : tGluAlaAsp : 116 :||| !||| lGluArgAsp 299979 : CGAGAGAGAC : 299989 vulgar: gi|350396511|ref|XP_003484578.1| 17 116 . KQ414889.1 299689 299989 + 173 M 21 63 G 0 3 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299690 299989 173 + . gene_id 27 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299690 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299690 299989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299690 299989 173 + . alignment_id 27 ; Query gi|350396511|ref|XP_003484578.1| ; Align 299690 18 63 ; Align 299756 39 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 12 -> 264 Target range: 194156 -> 194900 13 : LysAlaAsnSerAspTyrGlyLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyV : 32 ||| !:!!!!!!!:|||!.!:!!!:!:!! !:! !.!!|||! !|||||||||: LysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyI 194157 : AAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTA : 194214 33 : alTrpProSerPheProSerThrThrArgPheGluLysIleValSerIleThrLeuAs : 51 !!||||||!!! !||| ! ! !!:!:!:!! ! !.!!.!!! !!. leTrpProArgGluAspSerLeuArg------AspArgValArgLeuPheAlaGlnTh 194215 : TCTGGCCAAGGGAGGATTCTCTTCGC------GACAGAGTCCGACTGTTCGCTCAAAC : 194265 52 : nValIleCysTyrSerSerIleIleLeuThrThrIleProCysLeuValArgMetPhe : 70 !! !:!: !!:!:!!! !!!: !!!! ! !:!!||| !:!!:!! !! !:! rGlyValValPheAlaLeuMetCysPheLeuLeuValProHisValIleTyrThrTyr 194266 : TGGCGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTAC : 194322 71 : LeuGluAspGluSerIleTyrLeuLysLeuLysSerLeuGlyProValSerHisTrpI : 90 !!!!!: !|||..!:!: ! ! :!!||| !:!!!.! !! ! ! ! ! : PheAspCysGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerL 194323 : TTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTC : 194382 91 : leValSerGlyAlaAsnTyrThrThrLeuLeuLeuArgSerLysAspIleArgGlnCy : 109 !::!!:!! ! !!!.!:! !|||:!!:!!:!!!.!!!!|||!!:|||||| || euLeuAlaIleIleLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCy 194383 : TGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTG : 194439 110 : sMetGluHisMetGluAlaAspTrpGlnThrValThrArgGluLysAspGlnTrpVal : 128 |:!! !.!.||||||.!!.!.!::::! !||| ! !!|||:!!|||!:! !||| sLeuLeuGluMetGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnVal 194440 : TCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTG : 194496 129 : MetLeuLysAsnAlaLysPheGlyArgTyrValAlaAlaSerCysAlaIlePheMetG : 148 ||| !!!. !||||||.!!||||||!:! !!.!!.!! !! ! ! !.!! MetThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerT 194497 : ATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTT : 194556 149 : lnSerGlyIleMetCysPheIlePheValAlaAlaMetAspThrValGluIleGlnIl : 167 ! .!!||| !:!! !:! !.!!:!! ! !!:!! :!!! !..!||| :! yrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluArgIle---Va 194557 : ACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATT---GT : 194610 168 : eGlyAsnGluThrArgIleLeuHisValLeuProCysAlaValTyrLysLysLeuIle : 186 ! !.!.!!:!.!!!!! !! ! !||||||! ! ! ! !! ! !!!.!! lLysGluAspAsnSerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePhe 194611 : CAAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTC : 194667 187 : AsnValAspGluSerProThrAsnGluIleMetLeuPheLeuGlnAlaTrpCysThrM : 206 :!!!!:!!:||||||! ! !!||||||! !!! !!! !||| ! ! !!:!! AlaIleGluAspSerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerS 194668 : GCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCA : 194727 207 : etIleAlaAsnSerSerThrValGlyMetPheSerLeuAlaAlaValLeuAlaAlaHi : 225 ||| ! |||!!!!.! !|||!!:!:!||||||!.!|||..!:!! ! !|| erIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHi 194728 : GCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCA : 194784 226 : sAlaCysGlyGlnLeuAsnValValMetValTrpIleThrGluPheValAsnGluPro : 244 |..!|||||| !!!!.!.|||..!! ! !!!!: ||| !:!!::!! !||| sCysCysGlyLeuPheGluValThrSerArgArgMet---GluThrIleSerValPro 194785 : TTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGATG---GAGACTATTTCTGTGCCC : 194838 245 : LysLysThrAspGlyProAsnSerIleGlyValIleValGluArgHisLeuArgThrL : 264 ! !! !||| !! !..!!!!:!! !!! !:!!|||:!! !||||||!:!.!!: ThrGlyLysAspIleArgGlyArgLeuArgAspValValGlnPheHisLeuLysAlaI 194839 : ACTGGGAAGGATATTCGGGGTAGACTTAGGGACGTCGTTCAGTTTCATCTGAAAGCAA : 194898 265 : eu : 264 !! le 194899 : TT : 194900 vulgar: gi|350396511|ref|XP_003484578.1| 12 264 . KQ414889.1 194156 194900 + 159 M 28 84 G 2 0 M 123 369 G 1 0 M 71 213 G 1 0 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194157 194900 159 + . gene_id 28 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194157 194900 . + . KQ414889.1 exonerate:protein2genome:local exon 194157 194900 . + . insertions 0 ; deletions 4 KQ414889.1 exonerate:protein2genome:local similarity 194157 194900 159 + . alignment_id 28 ; Query gi|350396511|ref|XP_003484578.1| ; Align 194157 13 84 ; Align 194241 43 369 ; Align 194610 167 213 ; Align 194823 239 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 330 -> 388 Target range: 214848 -> 215022 331 : IleLeuThrGluGlnSerLysLysValGlyGluValValTyrMetThrAsnTrpTyrT : 350 |||:!! !:!!|||!!!|||||||||||||||||| !||||||! !.!.|||||| IleMetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrA 214849 : ATTATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACC : 214906 351 : yrLeuProAspLysThrIleLeuAspLeuIleLeuIleIleAlaArgSerGlyValVa : 369 ||||||! !!!.! !! ||| !! !|||||||||!!:|||! !|||..! ! rgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSe 214907 : GATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATC : 214963 370 : lValGlnIleThrAlaGlyLysMetValHisMetSerValTyrThrPheGlyAspVal : 388 !|||:!!.!!|||||||||!!.||||||.!.:!!|||:!! !||||||.!!..!||| rValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214964 : CGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215020 vulgar: gi|350396511|ref|XP_003484578.1| 330 388 . KQ414889.1 214848 215022 + 138 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214849 215022 138 + . gene_id 29 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214849 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214849 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214849 215022 138 + . alignment_id 29 ; Query gi|350396511|ref|XP_003484578.1| ; Align 214849 331 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 290 -> 335 Target range: 214605 -> 214740 291 : IleLeuGlyTyrTyrIleLeuSerGluTrpAlaAspGlnAsnValGlnSerLeuIleT : 310 |||::: ::: |||||| |||||| !....!.|||:!! !!!! !:!!| IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 311 : hrTyrIleMetIleTyrIleSerIleGlyPheAsnValPheLeuIleCysTyrIleGl : 329 |||||:!::!!:!:|||||||||::: ||||||:::|||:::...||||||||||| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 330 : yGluIleLeuThrGluGln : 335 ||||:!!:!!:!!|||||| yGluLeuValSerGluGln 214721 : CGAGCTTGTGTCTGAACAG : 214740 vulgar: gi|350396511|ref|XP_003484578.1| 290 335 . KQ414889.1 214605 214740 + 133 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 214740 133 + . gene_id 30 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 214740 133 + . alignment_id 30 ; Query gi|350396511|ref|XP_003484578.1| ; Align 214606 291 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 296 -> 346 Target range: 224317 -> 224467 297 : LeuSerGluTrpAlaAspGlnAsnValGlnSerLeuIleThrTyrIleMetIleTyrI : 316 !!!...||||||:::......:!!:!! ||| !:!:||||||.!!!!::!! !! PheGlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuM 224318 : TTTCaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCA : 224375 317 : leSerIleGlyPheAsnValPheLeuIleCysTyrIleGlyGluIleLeuThrGluGl : 335 !:|||::: ||||||:::|||:::...|||||||||||||||:!::!!.!!||||| etSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl 224376 : TGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAca : 224432 336 : nSerLysLysValGlyGluValValTyrMetThr : 346 | |||... :::::: ::: ||| nValLysAsnPheLeuLysLeuPhePheThrThr 224433 : ggtgaaaaattttttaaaattattcttcacCACT : 224467 vulgar: gi|350396511|ref|XP_003484578.1| 296 346 . KQ414889.1 224317 224467 + 116 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224318 224467 116 + . gene_id 31 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224318 224467 . + . KQ414889.1 exonerate:protein2genome:local exon 224318 224467 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224318 224467 116 + . alignment_id 31 ; Query gi|350396511|ref|XP_003484578.1| ; Align 224318 297 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396456|ref|XP_003484556.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 672 Query range: 0 -> 259 Target range: 204200 -> 204977 1 : MetSerGluLeuGlyAspLysGluGluAsnLeuLysHisPheValLysPheIleTyrP : 20 ||||||! !:!!!.! !||||||:!!|||!:!:!! ..!:::|||:!: ! | MetSerGlyIleAlaArgAlaGluGluAspLeuArgTyrAlaThrArgPheValLysP 204201 : ATGTCTGGAATCGCGAGGGCAGAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGC : 204258 21 : roProMetLysLeuIleGlyAlaTrpProLysProThrAlaThrSerThrPheSerLy : 39 || !:!: !:!!:!!||||||||||||! |||..! !:!!||| !!|||!!!!: roIleLeuGlyIleValGlyAlaTrpProIleProValAsnSerSerProPheThrAr 204259 : CGATTTTAGGGATAGTCGGTGCGTGGCCGATTCCAGTGAACTCCTCTCCGTTCACGAG : 204315 40 : sAlaIleLysTrpGlyLeuIleValSerAlaTyrPheLeuGlnLeuLeuValPheVal : 58 ! !:!!::! ! ! ! !||| !.!!||||||||| ...|||:!!.!!||| gLeuValArgArgIleGluHisValValThrTyrPheLeuPhePheLeuMetIleVal 204316 : GCTAGTACGGCGAATAGAACACGTAGTCACCtatttcctcttctttctgaTGATCGTA : 204372 59 : ProGlyValLeuTyrLeuPheLeuLysGluLysAsnGlyLysLysArgIleHisIleM : 78 ||||||:!!||||||:!!||||||||||||||||||||||||! |||:!: ! |||: ProGlyLeuLeuTyrValPheLeuLysGluLysAsnGlyLysIleArgLeuLysIleL 204373 : CCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTC : 204432 79 : etIleProHisIleAsnGlyPheSerGlnLeuCysLysTyrThrIleLeuLeuArgAr : 97 !: ||| !:!:||| !! !! !|||!!!! !||||||:!!:!!:!!||| !|| euGlyProIleValAsnCysSerIleGlnPhePheLysTyrSerValIleLeuTyrAr 204433 : TCGGGCCGATCGTGAACTGCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCG : 204489 98 : gThrAsnGluPheSerLysIleLeuAspGlnLeuSerAspAspTrpValAspAlaThr : 116 |! !:!!:!!.!!..!|||! !|||:!! :!!!!! !||||||:!!!!:|||||| gIleAspLysIleGlnLysSerLeuAsnThrIleArgArgAspTrpIleGluAlaThr 204490 : GATCGACAAAATTCAGAAGAGTTTGAACACCATCAGACGCGACTGGATAGAGGCTACG : 204546 117 : GluAspSerArgHisIlePheArgMetArgAlaAsnIleGlyHisArgMetValLeuT : 136 !!:!!:!:!||| ||||||||| !!:!|||!!.||||||!..|||:!!:!!|||! AspGluAsnArgLeuIlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuI 204547 : GATGAAAATCGGTTGATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGA : 204606 137 : hrValAlaIleThrMetTyrThrThrGlyLeuPheTyrArgIleIleIleProLeuSe : 155 !!.!||| !||||||||| ! !||||||! !||||||! |||:!!||||||! leAlaAlaAlaThrMetTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLe 204607 : TTGCAGCCGCCACTATGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTT : 204663 156 : rArgGlyArgIleValLeuProAsnAsnThrThrMetArgValLeuProCysProVal : 174 !||||||! !|||||| !|||:!!|||..!|||!!:||| !||||||||||||||| uArgGlyThrIleValThrProAspAsnValThrIleArgProLeuProCysProVal 204664 : GAGAGGAACGATCGTAACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTT : 204720 175 : TyrPhePhePhePheAsnGluGlnSerThrProTyrTyrGluIleIlePheValLeuG : 194 |||||| ||||||||||||||| !!:!!||| !!|||||||||:!!|||:!!|||| TyrPheValPhePheAsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuG 204721 : tactttgttttctttaacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGC : 204780 195 : lnIleMetGlyGlyPheLeuAsnTyrThrIleLeuCysSerThrMetGlyValCysLe : 213 ||||||||!.!||||||:!!!.!|||.!!:!!:!! !!.!!||| |||:!!||| lnIleMetAlaGlyPheValThrTyrAlaValIleSerGlyThrCysGlyMetCysAl 204781 : AAATTATGGCTGGTTTTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGC : 204837 214 : uMetLeuCysLeuHisLeuSerSerLeuLeuArgIleLeuMetAsnLysMetIleGlu : 232 !:!!!!! !|||||| !!!!|||:!!||||||||||||:!!|||||||||! !! ! aLeuPheValLeuHisAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAla 204838 : GCTGTTCGTTCTCCACGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCA : 204894 233 : LeuThrSerGlnLeuAspThrSerGluThrAlaValGlnLysLysIleSerAspIleV : 252 |||..!..!:!! !|||! !!!!|||||| !|||!!.!:!||||||:!!||||||| LeuValAspLysAlaAspMetThrGluThrLeuValHisArgLysIleAlaAspIleV 204895 : CTTGTGGATAAGGCGGACATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTG : 204954 253 : alAlaTyrGlnThrLysValLys : 259 ||! !||||||||||||:!!||| alGluTyrGlnThrLysIleLys 204955 : TTGAATATCAGACGAAGATAAAG : 204977 vulgar: gi|350396456|ref|XP_003484556.1| 0 259 . KQ414889.1 204200 204977 + 672 M 259 777 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204201 204977 672 + . gene_id 1 ; sequence gi|350396456|ref|XP_003484556.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204201 204977 . + . KQ414889.1 exonerate:protein2genome:local exon 204201 204977 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 204201 204977 672 + . alignment_id 1 ; Query gi|350396456|ref|XP_003484556.1| ; Align 204201 1 777 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396456|ref|XP_003484556.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 274 Query range: 293 -> 383 Target range: 206050 -> 206401 294 : GluTrpGluGluSerAsnAlaAlaSerIleIleValTyrLeuMetPheGlnGlyIleC : 313 |||||||||.!.!:!|||.!!.!!:!!:!!|||||||||:!!! !!!.||| ! !| GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 314 : ysIlePheCysAsnTyrAlaMetCysTyrIleGlyGlnLeuLeuIleAsnGlu >>> : 331 ||! !|||||| !!:! !:!:||||||||||||||||||||||||:!!:!! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 332 : > Target Intron 1 >>>> SerGluAsnValArgLeuMetSerIleThrLeuA : 342 81 bp !:!.!. !||| !!|||! ||| !|||:!!| ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 343 : snTrpTyrArgPheProMetLysLysAlaArgAsnLeuIleLeuIleIleIleMetSe : 361 |||||||||||.!!|||! !:! ! ||||||::!:!!|||||||||||| !||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 362 : rAsnTyrProIleLysLeuThrAlaGlyLysIleValAspIleSerLeuAlaThrPhe : 380 |||||||||||||||||||||||||||||||!!: !!!!:!!:|||||||||!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 381 : ThrAspIle : 383 ||||||:!! ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: gi|350396456|ref|XP_003484556.1| 293 383 . KQ414889.1 206050 206401 + 274 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 274 + . gene_id 2 ; sequence gi|350396456|ref|XP_003484556.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 274 + . alignment_id 2 ; Query gi|350396456|ref|XP_003484556.1| ; Align 206051 294 111 ; Align 206243 331 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396456|ref|XP_003484556.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 203 Query range: 24 -> 257 Target range: 232495 -> 233200 25 : IleGlyAlaTrpProLysProThrAlaThrSerThrPheSerLysAlaIleLysTrpG : 44 !!:||||||||||||::: !|||! !||||||! ! !..!:!! !:!! ! MetGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysL 232496 : ATGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAAC : 232553 45 : lyLeuIleValSerAlaTyrPheLeuGlnLeuLeuValPheValProGlyValLeuTy : 63 !|||! !:!!!!!..!:!!! !|||..!:!!! ! !.!!|||||| !!:!!|||!: euLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPh 232554 : TGTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTT : 232610 64 : rLeuPheLeuLysGluLysAsnGlyLysLysArgIleHisIleMetIleProHisIle : 82 !:!!.!.!!!:!!!!:! !!:! !:!!:!!|||!!: ! !!!: !||| ! ! eIleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSer 232611 : CATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGT : 232667 83 : AsnGlyPheSerGlnLeuCysLysTyrThrIleLeuLeuArgArgThrAsnGluPheS : 102 :!! !.!.! ! !! !!.||| ! !|||||| !!:!.!!|||!!:.!! HisPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleL 232668 : CACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCC : 232727 103 : erLysIleLeuAspGlnLeuSerAspAspTrpValAspAlaThrGluAsp<->SerAr : 120 ! ! !:!!!!:|||:!!!.!.!.|||||| !:!!!.!! !:!! ! !|| euTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisAr 232728 : TCTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCG : 232784 121 : gHisIlePheArgMetArgAlaAsnIleGlyHisArgMetValLeuThrValAlaIle : 139 | !!:!:.!. !! !!.!|||!!.:!!|||!.! !!!:!.!! !! !!.!|||.!! gAspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPhe 232785 : TGATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTT : 232841 140 : ThrMetTyrThrThrGlyLeuPheTyrArgIleIleIleProLeuSerArgGlyArgI : 159 !|||:!!||| !! ! !! ! !!..!|||:!!! ! !||| !!! !.!!! !. CysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrP 232842 : TGCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGT : 232901 160 : leValLeuProAsnAsnThr<->ThrMetArgValLeuProCysProValTyrPhePh : 177 !! !:!! !|||.!.!:! :!!||| ! !||||||||| !! !!||| heTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLy 232902 : TCTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAA : 232958 178 : ePhePheAsnGluGlnSerThrProTyrTyrGluIleIlePheValLeuGlnIleMet : 196 .!..!.:!! ::!! !!:!||| !!||||||!!:|||||||||||| !:!: sLeuMetAspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeu 232959 : GCTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTC : 233015 197 : GlyGlyPheLeuAsnTyrThrIleLeuCysSerThrMetGlyValCysLeuMetLeuC : 216 ..!||||||:!! !!:!!:!! ! .!!.!! |||:!! !! !:!:|||. SerGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuA 233016 : TCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAG : 233075 217 : ysLeuHisLeuSerSerLeuLeuArgIleLeuMetAsnLysMetIleGluLeuThrSe : 235 ..:!!||| !!!!.!!! !|||!.!:!::!!|||:::|||:!! !!!:|||..!.. laMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAs 233076 : CGATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGA : 233132 236 : rGlnLeuAspThrSerGluThrAlaValGlnLysLysIleSerAspIleValAlaTyr : 254 ! ! !! !..!|||! !!.!!.!|||!:!|||:!!.!! !||||||! !:!! pAlaLysGlyGlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHis 233133 : CGCGAAAGGGCAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCAT : 233189 255 : GlnThrLys : 257 !!. !::: HisLeuArg 233190 : CATTTGCGT : 233200 vulgar: gi|350396456|ref|XP_003484556.1| 24 257 . KQ414889.1 232495 233200 + 203 M 94 282 G 0 3 M 47 141 G 0 3 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232496 233200 203 + . gene_id 3 ; sequence gi|350396456|ref|XP_003484556.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232496 233200 . + . KQ414889.1 exonerate:protein2genome:local exon 232496 233200 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232496 233200 203 + . alignment_id 3 ; Query gi|350396456|ref|XP_003484556.1| ; Align 232496 25 282 ; Align 232781 119 141 ; Align 232925 166 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396456|ref|XP_003484556.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 199 Query range: 21 -> 236 Target range: 262876 -> 263527 22 : MetLysLeuIleGlyAlaTrpProLysProThrAlaThrSerThrPheSerLysAlaI : 41 :!!|||! !||||||||||||||| ! !!.!!:!!! !|||! !.!...!::! !| LeuLysProIleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleI 262877 : CTGAAACCGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTA : 262934 42 : leLysTrpGlyLeuIleValSerAlaTyrPheLeuGlnLeuLeuValPheValProGl : 60 || !!:: !||||||||| !..!|||! !||| !|||! !..! !!:!!|||.. leTrpPheLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSe 262935 : TCTGGTTTCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTC : 262991 61 : yValLeuTyrLeuPheLeuLysGluLysAsnGlyLysLysArgIleHisIleMetIle : 79 !:!!|||:!!:!! !!|||:!!! :!!||| ! ! ! !!:!:!:!!.:!!:!: ! rIleLeuHisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGly 262992 : CATACTTCATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGT : 263048 80 : ProHisIleAsnGlyPheSerGlnLeuCysLysTyrThrIleLeuLeuArgArgThrA : 99 |||! ! !.!. !!||| ! :!! !!!.|||||| ||||||! !!.!!:!! ProLeuGlyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerL 263049 : CCGCTCGGTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTA : 263108 100 : snGluPheSerLysIleLeuAspGlnLeuSerAspAspTrpValAspAlaThrGlu<- : 118 !.!!:.!...! !:!!.!.!!.:!!..!!!:|||||| ! !!.!|||..! ysAspIleGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLe 263109 : AAGATATACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTT : 263165 119 : >AspSerArgHisIlePheArgMetArgAlaAsnIleGlyHisArgMetValLeuThr : 136 !!:..!!:!!.!|||.!.! !! !!.!|||!!. !|||!.! !:!!!.! !:!! uGluAspGlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSer 263166 : GGAGGATCAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCT : 263222 137 : ValAlaIleThrMetTyrThrThrGlyLeuPheTyrArgIleIleIleProLeuSerA : 156 !|||||| !||| ! |||!:! !:!!! ! ! !!:!!:!!! ! !!!!!!!!! CysAlaIlePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrT 263223 : TGCGCGATCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTA : 263282 157 : rgGlyArgIleValLeuProAsnAsnThr<->ThrMetArgValLeuProCysProVa : 174 ! ! !|||! ! ! !|||.!.||| ! !:!:|||:!!|||||||||||||| hrGlnValIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProVa 263283 : CACAGGTGATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGT : 263339 175 : lTyrPhePhePhePheAsnGluGlnSerThrProTyrTyrGluIleIlePheValLeu : 193 |||| .!!.!! ! .!.!!!!.!||| !!||||||.!!.!!!.! ! lTyrLysGluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThr 263340 : GTACAAAGAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACG : 263396 194 : GlnIleMetGlyGlyPheLeuAsnTyrThrIleLeuCysSerThrMetGlyValCysL : 213 |||.!!:!!..!||||||:!! ! !.!!! ! ! !.!!.!!.!.|||:!! GlnPheLeuSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrA 263397 : CAATTTCTGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAG : 263456 214 : euMetLeuCysLeuHisLeuSerSerLeuLeuArgIleLeuMetAsnLysMetIleGl : 232 !:!!!!!..! !||| !!!!.!!! !|||!.!:!:||||||::! !!!:! || laValPheAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGl 263457 : CGGTGTTCGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGA : 263513 233 : uLeuThrSerGln : 236 |!!!..!!:!||| uPheValAsnGln 263514 : ATTCGTGAACCAG : 263527 vulgar: gi|350396456|ref|XP_003484556.1| 21 236 . KQ414889.1 262876 263527 + 199 M 96 288 G 0 3 M 48 144 G 0 3 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262877 263527 199 + . gene_id 4 ; sequence gi|350396456|ref|XP_003484556.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262877 263527 . + . KQ414889.1 exonerate:protein2genome:local exon 262877 263527 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262877 263527 199 + . alignment_id 4 ; Query gi|350396456|ref|XP_003484556.1| ; Align 262877 22 288 ; Align 263168 118 144 ; Align 263315 166 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396456|ref|XP_003484556.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 191 Query range: 293 -> 398 Target range: 224323 -> 224770 294 : GluTrpGluGluSerAsnAlaAlaSerIleIleValTyrLeuMetPheGlnGlyIleC : 313 ||||||......|||:!! !.!!||| :!:..!|||!!!!!:.!.! ! GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 314 : ysIlePheCysAsnTyrAlaMetCysTyrIleGlyGlnLeuLeuIleAsnGlu >>> : 331 ||| ::: ...||||||||||||:!!|||:!! !.!.::: euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln++ 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggt... : 224437 332 : > Target Intron 1 >>>> SerGluAsnValArgLeuMetSerIleThrLeuA : 342 65 bp |||...::: !:!!||| !! !:!!: ++CysGluLysIleGlyGlnValSerTyrMetIleA 224438 : ......................agtgtgaaaaaattggacaAGTGTCGTACATGATCG : 224533 343 : snTrpTyrArgPheProMetLysLysAlaArgAsnLeuIleLeuIleIleIleMetSe : 361 !!|||||||||!!. !! !!.||| !! ! !! !|||||||||||| ||||| spTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 224534 : ACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGATGTC : 224590 362 : rAsnTyrProIleLysLeuThrAlaGlyLysIleValAspIleSerLeuAlaThrPhe : 380 ||||! ! !!||||||||||||||||||!!.!!:|||!!::!:!!!|||.!!|||||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThrPhe 224591 : CAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACTTTC : 224647 381 : ThrAsp >>>> Target Intron 2 >>>> IleIleLysAlaSerValGlyTy : 390 !||| 67 bp :!!:!!|||.!!:!!|||!.!!: GlyAsp++ ++ValValLysThrAlaValAlaPh 224648 : GGTGACgt.........................agGTTGTCAAGACAGCTGTCGCATT : 224744 391 : rLeuAsnValLeuArgLysValThr : 398 !|||||||||||||||! !:!!||| eLeuAsnValLeuArgThrLeuThr 224745 : TTTGAACGTGTTACGAACATTGact : 224770 vulgar: gi|350396456|ref|XP_003484556.1| 293 398 . KQ414889.1 224323 224770 + 191 M 37 111 5 0 2 I 0 61 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224770 191 + . gene_id 5 ; sequence gi|350396456|ref|XP_003484556.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224655 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224655 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224656 224657 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224656 224722 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 224721 224722 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 224723 224770 . + . KQ414889.1 exonerate:protein2genome:local exon 224723 224770 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224770 191 + . alignment_id 5 ; Query gi|350396456|ref|XP_003484556.1| ; Align 224324 294 111 ; Align 224500 331 156 ; Align 224723 383 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396456|ref|XP_003484556.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 290 -> 396 Target range: 264528 -> 265004 291 : IleIleValGluTrpGluGluSerAsnAlaAlaSerIleIleValTyrLeuMetPheG : 310 :!!.!! !|||||||||... ::: :::::: !..!|||!!!|||.!.! ValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleL 264529 : GTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATAC : 264586 311 : lnGlyIleCysIlePheCysAsnTyrAlaMetCysTyrIleGlyGlnLeuLeuIleAs : 329 ! ! ! ! ! !! !!:! !|||||||||||||||:!!:!!|||! !.! euIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGl 264587 : TGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGA : 264643 330 : nGlu >>>> Target Intron 1 >>>> SerGluAsnValArgLeuMetSerI : 339 .::: 78 bp !!!:!!!!.||| !! !:!! ! uGln++ ++CysLysLysValGlyGluValValT 264644 : Gcaggt.........................agTGTAAGAAAGTTGGTGAGGTGGTTT : 264751 340 : leThrLeuAsnTrpTyrArgPheProMetLysLysAlaArgAsnLeuIleLeuIleIl : 358 !! !! !||||||||| !!!.||| ||| ! !! !:!!|||||||||||||| yrMetSerAsnTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLeuIleIl 264752 : ACATGTCGAATTGGTATTACTTACCCTACAAAGATATCCTTGATCTGATTCTCATCAT : 264808 359 : eIleMetSerAsnTyrProIleLysLeuThrAlaGlyLysIleValAspIleSerLeu : 377 |:!!! |||!:! !.!!|||!!!|||||||||||||||:!! !!!!:|||:!! eLeuArgSerSerValValPheLysPheThrAlaGlyLysIleLeuHisMetSerMet 264809 : TTTAAGATCCAGCGTGGTGTTTAAATTCACCGCTGGAAAGATACTTCACATGTCCATG : 264865 378 : AlaThrPheThrAsp >>>> Target Intron 2 >>>> IleIleLysAlaSe : 387 !||||||!:!||| 80 bp :!!||||||:!!|| TyrThrPheSerAsp++ ++ValIleLysSerSe 264866 : TACACATTCAGTGACgt.........................aggTAATCAAATCCTC : 264975 388 : rValGlyTyrLeuAsnValLeuArgLys : 396 | !! !|||||||||:!!||||||:!! rPheThrTyrLeuAsnLeuLeuArgGln 264976 : TTTCACGTACTTAAACTTACTTCGCCAA : 265004 vulgar: gi|350396456|ref|XP_003484556.1| 290 396 . KQ414889.1 264528 265004 + 174 M 40 120 5 0 2 I 0 74 3 0 2 M 52 156 5 0 2 I 0 76 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264529 265004 174 + . gene_id 6 ; sequence gi|350396456|ref|XP_003484556.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264529 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264529 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264726 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265004 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265004 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264529 265004 174 + . alignment_id 6 ; Query gi|350396456|ref|XP_003484556.1| ; Align 264529 291 120 ; Align 264727 331 156 ; Align 264963 383 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396456|ref|XP_003484556.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 293 -> 380 Target range: 291368 -> 292542 294 : GluTrpGluGluSerAsnAlaAlaSerIleIleValTyrLeuMetPheGlnGlyIleC : 313 |||||||||...|||:!!:!! !.!!|||:!!..!|||:!!! .!!! ! !! GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 314 : ysIlePheCysAsnTyrAlaMetCysTyrIleGlyGlnLeuLeuIleAsnGlu >>> : 331 !! !||| !! !.!.||||||:!!|||:!!||||||:!!...:!! heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln++ 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAGgt... : 291482 332 : > Target Intron 1 >>>> SerGluAsnValArgLeuMetSerIleThrLeuA : 342 913 bp .!!....!.:!! !! ! ||| ! ! !. ++GlySerGluIleAlaHisAlaSerTyrAspThrG 291483 : ......................agGGTAGTGAAATCGCGCACGCTTCCTACGATACAG : 292426 343 : snTrpTyrArgPheProMetLysLysAlaArgAsnLeuIleLeuIleIleIleMetSe : 361 !.||||||!.!.!.|||! ::!|||||||||:!!:!!:!!|||:!::!! !!!:!! luTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIleTh 292427 : AATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAAC : 292483 362 : rAsnTyrProIleLysLeuThrAlaGlyLysIleValAspIleSerLeuAlaThrPhe : 380 !!!.:!!||||||||||||||||||||||||||| !!! !:!!|||||| !|||||| rLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPhe 292484 : GAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTT : 292540 vulgar: gi|350396456|ref|XP_003484556.1| 293 380 . KQ414889.1 291368 292542 + 172 M 37 111 5 0 2 I 0 909 3 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 292542 172 + . gene_id 7 ; sequence gi|350396456|ref|XP_003484556.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292542 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292542 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 292542 172 + . alignment_id 7 ; Query gi|350396456|ref|XP_003484556.1| ; Align 291369 294 111 ; Align 292393 331 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396456|ref|XP_003484556.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 311 -> 383 Target range: 200167 -> 200452 312 : IleCysIlePheCysAsnTyrAlaMetCysTyrIleGlyGlnLeuLeuIleAsnGlu : 331 :!!! !! !||||||! !!:! !:!:|||! !||||||||||||||||||:!!||| LeuSerThrPheCysIlePheIleLeuCysCysIleGlyGlnLeuLeuIleAspGlu+ 200168 : TTATCCACCTTCTGCATTTTCATACTATGTTGCATCGGTCAACTTCTTATCGATGAAg : 200225 332 : >>>> Target Intron 1 >>>> SerGluAsnValArgLeuMetSerIleThr : 340 68 bp !:! ! ||| !!|||! ||| !||| + ++AsnTyrValValGlyLeuThrSerCysThr 200226 : t.........................agAATTACGTGGTTGGATTAACATCTTGCACG : 200320 341 : LeuAsnTrpTyrArgPheProMetLysLysAlaArgAsnLeuIle-LeuIleIleIle : 359 :!!||||||! !||| !|||! !:! ! !.!||| !!|||! !#||||||||| ! ValAsnTrpCysArgProProAsnArgHisValArgTyrLeuThr#LeuIleIleAla 200321 : GTGAATTGGTGTCGTCCTCCAAACAGACATGTGCGCTATCTGACCGCTGATAATTGCC : 200378 360 : MetSerAsnTyrProIleLysLeuThrAlaGlyLysIleValAspIleSerLeuAlaT : 379 ||||||||||||! !|||!:!|||.!!::!.!!|||:!:|||!!:|||!:!||||||| MetSerAsnTyrLeuIleArgLeuAlaSerSerLysValValGluIleAsnLeuAlaT 200379 : ATGTCTAATTACCTAATAAGATTAGCAAGTAGTAAAGTGGTCGAAATAAATTTAGCTA : 200438 380 : hrPheThrAspIle : 383 |||||||||||:!! hrPheThrAspVal 200439 : CTTTCACAGATGTA : 200452 vulgar: gi|350396456|ref|XP_003484556.1| 311 383 . KQ414889.1 200167 200452 + 145 M 19 57 5 0 2 I 0 64 3 0 2 M 25 75 F 0 1 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 200168 200452 145 + . gene_id 8 ; sequence gi|350396456|ref|XP_003484556.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 200168 200224 . + . KQ414889.1 exonerate:protein2genome:local exon 200168 200224 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 200225 200226 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 200225 200292 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 200291 200292 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 200293 200452 . + . KQ414889.1 exonerate:protein2genome:local exon 200293 200452 . + . insertions 0 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local similarity 200168 200452 145 + . alignment_id 8 ; Query gi|350396456|ref|XP_003484556.1| ; Align 200168 312 57 ; Align 200293 331 75 ; Align 200369 356 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396456|ref|XP_003484556.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 336 -> 398 Target range: 219530 -> 219803 337 : MetSerIleThrLeuAsnTrpTyrArgPheProMetLysLysAlaArgAsnLeuIleL : 356 |||||| !! !:!!.!.|||||||||!!. !! |||||| !! ! !:!!| MetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValL 219531 : atgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTT : 219588 357 : euIleIleIleMetSerAsnTyrProIleLysLeuThrAlaGlyLysIleValAspIl : 375 ||! !||| !|||||||||! ! !!||||||||||||||||||!!.!!:|||!!::! euThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLe 219589 : TGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATT : 219645 376 : eSerLeuAlaThrPheThrAsp >>>> Target Intron 1 >>>> IleIleL : 385 :|||:!!::!|||||||||||| 87 bp :!!:!!| uSerIleSerThrPheThrAsp++ ++ValValL 219646 : GTCTATCAGCACTTTTACCGACgt.........................agGTCGTTA : 219762 386 : ysAlaSerValGlyTyrLeuAsnValLeuArgLysValThr : 398 ||.!!:!!||| !!:!|||||||||||||||! !:!!||| ysThrAlaValThrPheLeuAsnValLeuArgThrLeuThr 219763 : AGACTGCAGTCACGTTTCTGAATGTACTACGAACATTGACT : 219803 vulgar: gi|350396456|ref|XP_003484556.1| 336 398 . KQ414889.1 219530 219803 + 145 M 46 138 5 0 2 I 0 83 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219531 219803 145 + . gene_id 9 ; sequence gi|350396456|ref|XP_003484556.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 219531 219668 . + . KQ414889.1 exonerate:protein2genome:local exon 219531 219668 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219669 219670 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219669 219755 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219754 219755 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219756 219803 . + . KQ414889.1 exonerate:protein2genome:local exon 219756 219803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219531 219803 145 + . alignment_id 9 ; Query gi|350396456|ref|XP_003484556.1| ; Align 219531 337 138 ; Align 219756 383 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396456|ref|XP_003484556.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 341 -> 398 Target range: 277587 -> 277842 342 : AsnTrpTyrArgPheProMetLysLysAlaArgAsnLeuIleLeuIleIleIleMetS : 361 ||||||||| !!!.||| ||| ! !! !||||||:!!||||||||| !! | AsnTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgS 277588 : AATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGAT : 277645 362 : erAsnTyrProIleLysLeuThrAlaGlyLysIleValAspIleSerLeuAlaThrPh : 380 ||!:! ||||||:::||||||||||||::::::...:::|||:!! !||||| erSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPh 277646 : CTAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTT : 277702 381 : eThrAsp >>>> Target Intron 1 >>>> IleIleLysAlaSerValGlyT : 390 | !||| 84 bp :!!||||||.!!!!! !!...| eGlyAsp++ ++ValIleLysThrThrPheAlaT 277703 : CGGCGATgt.........................agGTAATAAAAACCACTTTCgcgt : 277816 391 : yrLeuAsnValLeuArgLysValThr : 398 ||||||||:::||||||:!!..!||| yrLeuAsnIleLeuArgGlnThrThr 277817 : atttaaatattctacgCCAAACGACG : 277842 vulgar: gi|350396456|ref|XP_003484556.1| 341 398 . KQ414889.1 277587 277842 + 139 M 41 123 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277588 277842 139 + . gene_id 10 ; sequence gi|350396456|ref|XP_003484556.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277588 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277588 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277588 277842 139 + . alignment_id 10 ; Query gi|350396456|ref|XP_003484556.1| ; Align 277588 342 123 ; Align 277795 383 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396456|ref|XP_003484556.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 332 -> 393 Target range: 280282 -> 280465 333 : AsnValArgLeuMetSerIleThrLeuAsnTrpTyrArgPheProMetLysLysAlaA : 352 !!.||| !!:!! !!! !! !:!!:!!|||||||||!!.||| !|||||||||! LysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaG 280283 : AAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCAC : 280340 353 : rgAsnLeuIleLeuIleIleIleMetSerAsnTyrProIleLysLeuThrAlaGlyLy : 371 :!..!||||||||||||.!! !:!!||||||! ! !!|||||||||||||||||||| lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 280341 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 280397 372 : sIleValAspIleSerLeuAlaThrPheThrAspIleIleLysAlaSerValGlyTyr : 390 ||||:!!|||:!!||||||::!!:!||| !..!:!:! !! !!:!:!!..!||| sIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 280398 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 280454 391 : LeuAsnVal : 393 ! !:!!:!! TyrHisLeu 280455 : TATCATTTG : 280465 vulgar: gi|350396456|ref|XP_003484556.1| 332 393 . KQ414889.1 280282 280465 + 139 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280283 280465 139 + . gene_id 11 ; sequence gi|350396456|ref|XP_003484556.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280283 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280283 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280283 280465 139 + . alignment_id 11 ; Query gi|350396456|ref|XP_003484556.1| ; Align 280283 333 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396456|ref|XP_003484556.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 332 -> 393 Target range: 287069 -> 287252 333 : AsnValArgLeuMetSerIleThrLeuAsnTrpTyrArgPheProMetLysLysAlaA : 352 !!.||| !!||| !!! !! !:!!:!!|||||||||!!.||| |||! !|||! LysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaG 287070 : AAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTC : 287127 353 : rgAsnLeuIleLeuIleIleIleMetSerAsnTyrProIleLysLeuThrAlaGlyLy : 371 :!..!||||||||||||.!! !:!!||||||! ! !!|||||||||||||||||||| lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 287128 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 287184 372 : sIleValAspIleSerLeuAlaThrPheThrAspIleIleLysAlaSerValGlyTyr : 390 ||||:!!|||:!!||||||::!!:!||| !..!:!:! !! !!:!:!!..!||| sIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 287185 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 287241 391 : LeuAsnVal : 393 ! !:!!:!! TyrHisLeu 287242 : TATCATTTG : 287252 vulgar: gi|350396456|ref|XP_003484556.1| 332 393 . KQ414889.1 287069 287252 + 136 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287070 287252 136 + . gene_id 12 ; sequence gi|350396456|ref|XP_003484556.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287070 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287070 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287070 287252 136 + . alignment_id 12 ; Query gi|350396456|ref|XP_003484556.1| ; Align 287070 333 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396456|ref|XP_003484556.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 337 -> 383 Target range: 301898 -> 302036 338 : SerIleThrLeuAsnTrpTyrArgPheProMetLysLysAlaArgAsnLeuIleLeuI : 357 ||| ! !:!!:!!||||||!.!!!.||| !|||!:!||| !:!!|||||||||: SerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuL 301899 : TCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTAC : 301956 358 : leIleIleMetSerAsnTyrProIleLysLeuThrAlaGlyLysIleValAspIleSe : 376 !!! !:!:!!:|||.!.|||||| |||||||||||||||||||||:!!|||:!!|| euSerValIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSe 301957 : TTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATC : 302013 377 : rLeuAlaThrPheThrAspIle : 383 |||| !||||||!:!..!:!! rLeuAsnThrPheSerSerVal 302014 : CTTGAATACATTCAGCTCTGTA : 302036 vulgar: gi|350396456|ref|XP_003484556.1| 337 383 . KQ414889.1 301898 302036 + 135 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301899 302036 135 + . gene_id 13 ; sequence gi|350396456|ref|XP_003484556.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301899 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301899 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301899 302036 135 + . alignment_id 13 ; Query gi|350396456|ref|XP_003484556.1| ; Align 301899 338 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396456|ref|XP_003484556.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 327 -> 383 Target range: 305615 -> 305783 328 : IleAsnGluSerGluAsnValArgLeuMetSerIleThrLeuAsnTrpTyrArgPheP : 347 |||::: !!|||...!:!||| !!||| !!!.!!! !:!!!:!||||||!.!!!.| IleSer***SerSerSerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuP 305616 : ATATCGTAGAGCAGTAGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTAC : 305673 348 : roMetLysLysAlaArgAsnLeuIleLeuIleIleIleMetSerAsnTyrProIleLy : 366 ||! |||! ! !!.!..!||||||||||||||| !||||||!:! !!||| !|| roThrLysThrIleHisGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLy 305674 : CGACTAAGACGATACATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAA : 305730 367 : sLeuThrAlaGlyLysIleValAspIleSerLeuAlaThrPheThrAspIle : 383 |:!!!:!|||||||||:!!||||||:!!||||||:!!|||||| !:!!:!: sIleSerAlaGlyLysValValAspLeuSerLeuSerThrPheGlyAsnVal 305731 : AATCAGTGCTGGTAAAGTAGTTGATTTATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: gi|350396456|ref|XP_003484556.1| 327 383 . KQ414889.1 305615 305783 + 132 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305616 305783 132 + . gene_id 14 ; sequence gi|350396456|ref|XP_003484556.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305616 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305616 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305616 305783 132 + . alignment_id 14 ; Query gi|350396456|ref|XP_003484556.1| ; Align 305616 328 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396456|ref|XP_003484556.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 341 -> 383 Target range: 235021 -> 235147 342 : AsnTrpTyrArgPheProMetLysLysAlaArgAsnLeuIleLeuIleIleIleMetS : 361 .!.|||||||||!!.||| |||! |||! !..!|||:!!:!!|||||| !! !| GluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgS 235022 : GAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGT : 235079 362 : erAsnTyrProIleLysLeuThrAlaGlyLysIleValAspIleSerLeuAlaThrPh : 380 ||!:! !||||||:!!||||||||||||.!!:!!.!.!!:|||:!!|||||||| erSerMetValIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPh 235080 : CGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATT : 235136 381 : eThrAspIle : 383 | !|||:!: eGlyAspVal 235137 : TGGCGATGTG : 235147 vulgar: gi|350396456|ref|XP_003484556.1| 341 383 . KQ414889.1 235021 235147 + 110 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 235022 235147 110 + . gene_id 15 ; sequence gi|350396456|ref|XP_003484556.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 235022 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 235022 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 235022 235147 110 + . alignment_id 15 ; Query gi|350396456|ref|XP_003484556.1| ; Align 235022 342 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396456|ref|XP_003484556.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 341 -> 388 Target range: 238661 -> 238802 342 : AsnTrpTyrArgPheProMetLysLysAlaArgAsnLeuIleLeuIleIleIleMetS : 361 :!!|||||| !.!.|||..!!:!!:! !! !:!!|||||||||||||||! ! | AspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgS 238662 : GATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGAT : 238719 362 : erAsnTyrProIleLysLeuThrAlaGlyLysIleValAspIleSerLeuAlaThrPh : 380 ||||| !:!!|||:!!||||||||||||:!!:!! !!!!:|||||| !||||| erAsnValValValLysValThrAlaGlyLysValLeuHisMetSerLeuTyrThrPh 238720 : CGAACGTGGTCGTTAAAGTCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTT : 238776 381 : eThrAspIleIleLysAlaSerVal : 388 | !|||:!!! !:!!.!!!:!:!! eGlyAspValSerGluThrAsnLeu 238777 : CGGCGATGTAAGTGAAACTAATCTT : 238802 vulgar: gi|350396456|ref|XP_003484556.1| 341 388 . KQ414889.1 238661 238802 + 107 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238662 238802 107 + . gene_id 16 ; sequence gi|350396456|ref|XP_003484556.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238662 238802 . + . KQ414889.1 exonerate:protein2genome:local exon 238662 238802 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238662 238802 107 + . alignment_id 16 ; Query gi|350396456|ref|XP_003484556.1| ; Align 238662 342 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396456|ref|XP_003484556.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 329 -> 388 Target range: 297641 -> 297818 330 : GluSerGluAsnValArgLeuMetSerIleThrLeuAsnTrpTyrArgPheProMetL : 349 :!!:!!|||!!. !! !! ! :!! !!.!:!!.!.||||||!.!!!.||| ! GlnAlaGluLysPheGlyAsnAlaAlaTyrAsnIleGluTrpTyrAsnLeuProProA 297642 : CAGGCTGAAAAATTCGGCAATGCAGCTTATAACATCGAATGGTACAACTTACCGCCAA : 297699 350 : ysLysAlaArgAsnLeuIleLeuIleIleIleMetSerAsnTyrProIleLysLeuTh : 368 !.!:!|||! !:!!|||:!:|||!!:||| !!!::!!!!.!:!||| !:!||||| snArgAlaLeuAspLeuValLeuMetIleGlyIleAlaLysPheProProArgLeuTh 297700 : ACAGGGCTCTCGATCTGGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCAC : 297756 369 : rAlaGlyLysIleValAspIleSerLeuAlaThrPheThrAspIleIleLysAlaSer : 387 |...||||||||| |||||||||:!! !||||||!:!! !:!! !!:: ||| rGlyGlyLysIlePheAspIleSerIleAsnThrPheSerAlaValArgArgGlnSer 297757 : AggtggaaaaatattcgatatatCGATAAACACGTTCAGTGCCGTACGTAgacaaagt : 297813 388 : Val : 388 ::: Leu 297814 : tta : 297818 vulgar: gi|350396456|ref|XP_003484556.1| 329 388 . KQ414889.1 297641 297818 + 107 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297642 297818 107 + . gene_id 17 ; sequence gi|350396456|ref|XP_003484556.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297642 297818 . + . KQ414889.1 exonerate:protein2genome:local exon 297642 297818 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297642 297818 107 + . alignment_id 17 ; Query gi|350396456|ref|XP_003484556.1| ; Align 297642 330 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396456|ref|XP_003484556.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 341 -> 388 Target range: 254307 -> 254448 342 : AsnTrpTyrArgPheProMetLysLysAlaArgAsnLeuIleLeuIleIleIleMetS : 361 :!!|||||| !.!.|||..!!:!!:! !! !:!!|||||||||||||||! ! | AspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgS 254308 : GATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGAT : 254365 362 : erAsnTyrProIleLysLeuThrAlaGlyLysIleValAspIleSerLeuAlaThrPh : 380 ||||| !:!!:!!:!!||||||||||||||| :::|||||| !||||| erAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPh 254366 : CGAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTT : 254422 381 : eThrAspIleIleLysAlaSerVal : 388 | !|||:!!! !:!!.!!!:!:!! eGlyAspValSerGluThrAsnLeu 254423 : CGGCGATGTAAGTGAAACTAATCTT : 254448 vulgar: gi|350396456|ref|XP_003484556.1| 341 388 . KQ414889.1 254307 254448 + 105 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254308 254448 105 + . gene_id 18 ; sequence gi|350396456|ref|XP_003484556.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254308 254448 . + . KQ414889.1 exonerate:protein2genome:local exon 254308 254448 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254308 254448 105 + . alignment_id 18 ; Query gi|350396456|ref|XP_003484556.1| ; Align 254308 342 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396456|ref|XP_003484556.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 341 -> 383 Target range: 244691 -> 244817 342 : AsnTrpTyrArgPheProMetLysLysAlaArgAsnLeuIleLeuIleIleIleMetS : 361 :!!|||||| !.!.|||..!!:!!:! !! !:!!|||||||||||||||! ! | AspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgS 244692 : GATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGAT : 244749 362 : erAsnTyrProIleLysLeuThrAlaGlyLysIleValAspIleSerLeuAlaThrPh : 380 ||||| !:!!:!!:!!||||||||||||:!!:!! !!!!:|||||| !||||| erAsnMetValValGluIleThrAlaGlyLysValLeuHisMetSerLeuTyrThrPh 244750 : CGAACATGGTCGTTGAAATCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTT : 244806 381 : eThrAspIle : 383 | !|||:!! eGlyAspVal 244807 : CGGCGATGTA : 244817 vulgar: gi|350396456|ref|XP_003484556.1| 341 383 . KQ414889.1 244691 244817 + 103 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244692 244817 103 + . gene_id 19 ; sequence gi|350396456|ref|XP_003484556.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244692 244817 . + . KQ414889.1 exonerate:protein2genome:local exon 244692 244817 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244692 244817 103 + . alignment_id 19 ; Query gi|350396456|ref|XP_003484556.1| ; Align 244692 342 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 1188 Query range: 0 -> 319 Target range: 1697443 -> 1699977 1 : MetAspLysAspSerGluLysThrLysValSerProThrProAlaCysLeuLysAr : 19 ||| ||| !||||||:!!..!||||||.!! !! ! !!||| !!! !||| MetArgLysIleSerGluGluValLysValGlyValMetSerAlaArgSerLysAl 1697444 : ATGAGAAAAATCTCGGAGGAGGTAAAAGTGGGTGTTATGTCGGCTCGTTCGAAGGC : 1697498 20 : gGluAsnGluAlaSerTyrThrLysAspPheAlaLeuLeuMetThrGlyPheLeuM : 38 !! !!!.:!!!.!|||:!!|||||||||||||||||||||||||||..!||||||| aValLysLysGlySerHisThrLysAspPheAlaLeuLeuMetThrSerPheLeuM 1697499 : GGTGAAAAAAGGGTCGCACACCAAAGATTTTGCTCTGTTAATGACGTCGTTTTTAA : 1697555 39 : etLysIleValGlyLeuTrpLeuThrLysAsnLysGluGluGluArgThrArgGln : 56 |||||||||||||||||||||||.!!|||:!!!..:!!|||||||||! !|||!:! etLysIleValGlyLeuTrpLeuAlaLysAspSerLysGluGluArgLysArgArg 1697556 : TGAAGATCGTCGGTCTTTGGTTAGCGAAAGACAGCAAGGAGGAACGCAAGCGTCGG : 1697609 57 : LeuThrLeuMetTyrThrValValAlaIleLeuPheGlyValTrpValGlnPheAr : 75 ! !||||||!!:|||||||||||||||||||||||||||||||||||||||||||| TyrThrLeuIleTyrThrValValAlaIleLeuPheGlyValTrpValGlnPheAr 1697610 : TACACTTTGATCTATACGGTGGTCGCGATTTTGTTTGGAGTGTGGGTGCAGTTCAG : 1697666 76 : gAspPheTyrTyrSerTrpProAsnPheGly >>>> Target Intron 1 >> : 86 ||||||||||||||||||||||||||||||| 849 bp gAspPheTyrTyrSerTrpProAsnPheGly++ 1697667 : AGACTTCTATTACTCCTGGCCGAATTTTGGCgt....................... : 1697701 87 : >> AspCysAlaTyrThrAlaCysAsnIleLeuCysLeuIleMetValLeuLeuL : 103 |||||||||||||||||||||||||||||||||||||||||||||||||||| ++AspCysAlaTyrThrAlaCysAsnIleLeuCysLeuIleMetValLeuLeuL 1697702 : ..aggACTGTGCTTACACCGCTTGTAACATTCTCTGCCTGATTATGGTACTGTTAA : 1698599 104 : ysLeuSerValValPheIleHisLysLysGluPheIleGluLeuLeuValTyrThr : 121 |||||! !|||||||||||||||!:!||||||||||||||||||||||||||| ysLeuPheValValPheIleHisArgLysGluPheIleGluLeuLeuValTyrMet 1698600 : AGCTGTTCGTTGTATTCATACACAGGAAAGAATTCATCGAACTgcttgtatatatg : 1698653 122 : HisLysAsnPheTrpHisThrAsnTyrSerTyrAsnGluLeuLeuLeuLeuGlnAs : 140 :::||||||||||||||| !||||||..!! !|||||||||||||||||||||:! TyrLysAsnPheTrpHisLeuAsnTyrAspCysAsnGluLeuLeuLeuLeuGlnAs 1698654 : tacaaaaatttttggcACCTCAATTACGATTGCAACGAACTACTACTGCTGCAAGA : 1698710 141 : nCysArgLysIleSerIleValCysIleSerLeuIleAsnValCysAlaGlnGlyT : 159 !||||||!:!||||||! !:!!||||||!!!||||||||| !!||||||||||||| pCysArgArgIleSerThrIleCysIleThrLeuIleAsnPheCysAlaGlnGlyT 1698711 : CTGCAGAAGAATTAGCACTATATGTATCACGTTGATTAACTTCTGTGCTCAAGGCA : 1698767 160 : hrValPheGlyTyrValLeuThrProIleVal{G} >>>> Target Intron : 170 ||:!! !!.!!||||||||||||||||||:!!{!} 232 bp hrIleValSerTyrValLeuThrProIleIle{A}++ 1698768 : CAATTGTCAGCTACGTGCTAACACCTATTATA{G}gt................... : 1698803 171 : 2 >>>> {lu}AsnIleGlyArgAsnTyrSerAspArgValLeuProPheArgMe : 185 { !}||||||||||||||| !|||||||||||||||||||||!.!|| ++{la}AsnIleGlyArgAsnSerSerAspArgValLeuProPheAsnMe 1698804 : ......ag{ca}aatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACAT : 1699077 186 : tTrpLeuAspLeuProLeuThrValThrProTyrTyrGluIleLeuPheValLeuG : 204 ||||:!!||||||||||||:!!|||:!!||| |||||||||:!!|||||||||| tTrpValAspLeuProLeuSerValSerProThrTyrGluIleValPheValLeuG 1699078 : GTGGGTTGATTTGCCGCTGTCTGTGTCACCAACGTACGAAATAGTGTTCGTGCTTC : 1699134 205 : ln >>>> Target Intron 3 >>>> ValLeuSerLeuTyrHisValGlyI : 213 || 499 bp ||||||||||||||||||||||||: ln++ ++ValLeuSerLeuTyrHisValGlyV 1699135 : AGgt.........................agGTTCTGTCTTTGTACCACGTTGGTG : 1699660 214 : leCysTyrIleCysPheAspAsnLeuLeuCysLeuIleAsnLeuHisAlaAlaThr : 231 !!|||||||||||||||||||||||||||||||||!!:|||||||||||||||||| alCysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThr 1699661 : TATGTTACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTACT : 1699714 232 : GlnPheArgIleLeuGlnTyrArgLeuLeuTyrLeuGlyGluThrIleGluLysGl : 250 |||||||||||||||||||||||||||! ! !!||||||!!:|||! !..!||||| GlnPheArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysGl 1699715 : CAATTTCGTATACTGCAATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGCA : 1699771 251 : nProAsnGluTyrAlaIleLysGluThrLeuProSerAsnTyrLeuLysAsnTyrH : 269 | !:!!!!: !!! ! !!..! !.!!||| |||..!!:! !:!!|||! !: nValAspAspAsnGluSerSerAlaAlaLeu---SerArgPheAlaGluAsnCysT 1699772 : AGTAGATGACAATGAATCCAGCGCAGCTCTG---TCTCGTTTCGCGGAGAACTGTT : 1699825 270 : isThrValPheLysCysCysValArgGluHisGlnAspArgIleAsnTyrCysGln : 287 !!! !!.!|||||| !|||||||||:!!||||||:!!!.!|||!..||||||!!. yrLysAlaPheLysAsnCysValArgGlnHisGlnAsnHisIleThrTyrCysHis 1699826 : ATAAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCATATCACGTACTGTCAC : 1699879 288 : ArgLeuAsnAsnIlePheThrTyrIleValLeuGlyHisIleValValPheSerLe : 306 |||||||||.!.||||||||| !||||||||||||||||||:!!||||||||||| ArgLeuAsnGluIlePheThrValIleValLeuGlyHisIleLeuValPheSerLe 1699880 : AGATTGAACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGCCT : 1699936 307 : uLeuLeuCysLeuValGlyPheGlnValLeuMetAlaAsn : 319 ||||:!!||||||||||||||||||||||||:!:! !||| uLeuIleCysLeuValGlyPheGlnValLeuValGluAsn 1699937 : TCTGATATGTCTGGTTGGATTCCAAGTGCTCGTAGAAAAC : 1699977 vulgar: gi|350397292|ref|XP_003484830.1| 0 319 . KQ414915.1 1697443 1699977 + 1188 M 85 255 5 0 2 I 0 845 3 0 2 M 84 252 S 0 1 5 0 2 I 0 228 3 0 2 S 1 2 M 34 102 5 0 2 I 0 495 3 0 2 M 56 168 G 1 0 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1697444 1699977 1188 + . gene_id 1 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1697444 1697698 . + . KQ414915.1 exonerate:protein2genome:local exon 1697444 1697698 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1697699 1697700 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1697699 1698547 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1698546 1698547 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1698548 1698800 . + . KQ414915.1 exonerate:protein2genome:local exon 1698548 1698800 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1698801 1698802 . + . intron_id 2 ; splice_site "Gt" KQ414915.1 exonerate:protein2genome:local intron 1698801 1699032 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1699031 1699032 . + . intron_id 1 ; splice_site "Ag" KQ414915.1 exonerate:protein2genome:local cds 1699033 1699136 . + . KQ414915.1 exonerate:protein2genome:local exon 1699033 1699136 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699137 1699138 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699137 1699635 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1699634 1699635 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699636 1699977 . + . KQ414915.1 exonerate:protein2genome:local exon 1699636 1699977 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1697444 1699977 1188 + . alignment_id 1 ; Query gi|350397292|ref|XP_003484830.1| ; Align 1697444 1 255 ; Align 1698548 86 252 ; Align 1699035 171 102 ; Align 1699636 205 168 ; Align 1699804 262 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 1055 Query range: 25 -> 424 Target range: 1692088 -> 1696257 26 : ThrLysAspPheAlaLeuLeuMetThrGlyPheLeuMetLysIleValGlyLeuTr : 44 !:!||||||.!!:!!:!!:!! !:!! !|||||||||||||||||||||||||| SerLysAspIleSerIleValTrpSerPhePheLeuMetLysIleValGlyLeuTr 1692089 : AGTAAAGATATCTCGATCGTTTGGTCGTTCTTTTTGATGAAAATCGTAGGTCTGTG : 1692143 45 : pLeuThrLysAsnLysGluGluGluArgThrArgGlnLeuThrLeuMetTyrThrV : 63 ||||.!! :!!:!!! |||:!!||| !|||.!.!!!.!!|||!!:||||||: pLeuAlaAlaAspGluAlaGluGlnArgArgArgAsnPheAlaLeuIleTyrThrL 1692144 : GCTAGCCGCCGACGAGGCTGAACAACGTCGGAGAAATTTCGCGCTGATTTACACGC : 1692200 64 : alValAlaIleLeuPheGlyValTrpValGlnPheArgAspPheTyrTyrSerTrp : 81 !! !||||||!!!.!!!.! !!! :!! !.!.||||||.!.|||||||||||| euAsnAlaIlePheIleAlaSerCysIleAlaMetArgAspIleTyrTyrSerTrp 1692201 : TGAACGCGATTTTTATCGCTTCGTGTATAGCAATGAGAGATATATACTATTCCTGG : 1692254 82 : ProAsnPheGly >>>> Target Intron 1 >>>> AspCysAlaTyrThr : 90 !||| ! ..! 1732 bp |||||| !|||..! GlyAsnValAsn++ ++AspCysIleTyrVal 1692255 : GGAAACGTGAACgt.........................agGACTGCATTTACGTC : 1694013 91 : AlaCysAsnIleLeuCysLeuIleMetValLeuLeuLysLeuSerValValPheIl : 109 !.!||||||||||||! !||| !!:|||!!!!!!|||:!! !|||:!!!:!! GlyCysAsnIleLeuTyrLeuAlaIleValPhePheLysIleLeuValLeuTyrLy 1694014 : GGGTGCAACATTTTATACCTAGCGATCGTTTTCTTCAAGATCCTCGTTTTGTACAA : 1694070 110 : eHisLysLysGluPheIleGluLeuLeuValTyrThrHisLysAsnPheTrpHisT : 128 |||!:!! !|||||| !! !|||:!! !!:!|||!!.:!!!!.||||||||| sHisArgIleGluPheTyrGlyLeuIleArgPheThrGlnGluLysPheTrpHisP 1694071 : GCACAGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAGAGAAATTCTGGCATT : 1694127 129 : hrAsnTyrSerTyrAsnGluLeuLeuLeuLeuGlnAsnCysArgLysIleSerIle : 146 !:!!|||!:!! ...||| !|||:!!|||....!.|||!:!||||||!!!! ! heAspTyrAsnSerArgGluLysLeuIleLeuSerGluCysLysLysIleCysThr 1694128 : TCGACTATAATTCACGGGAGAAGTTAATTTTATCCGAGTGCAAGAAGATATGTACC : 1694181 147 : ValCysIleSerLeuIleAsnValCysAlaGlnGlyThrValPheGlyTyrValLe : 165 |||! !||| ! !.!!!:! !!|||.!!||||||||| ! !|||||||||:! ValPheIleValAlaPheSerPheCysThrGlnGlyThrCysAlaGlyTyrValVa 1694182 : GTTTTCATCGTTGCCTTCAGCTTCTGTACTCAGGGCACGTGTGCTGGTTACGTAGT : 1694238 166 : uThrProIleVal{G} >>>> Target Intron 2 >>>> {lu}AsnIleG : 173 !|||||||||:!!{!} 100 bp { !}|||:!!| lThrProIleLeu{A}++ ++{la}AsnValG 1694239 : GACACCTATTTTA{g}gt.........................ag{CA}AATGTTG : 1694362 174 : lyArgAsnTyrSerAspArgValLeuProPheArgMetTrpLeuAspLeuProLeu : 191 ||!:!||| ! |||!!:|||:!!|||||||||!.!||||||:!!|||!!!||| ! lyLysAsnGlnSerGluArgMetLeuProPheAsnMetTrpValAspPheProThr 1694363 : GAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTGGGTTGACTTTCCTACA : 1694416 192 : ThrValThrProTyrTyrGluIleLeuPheValLeuGln >>>> Target Int : 205 !:!!:!!||||||||||||:!!||||||:!!:!!||| 409 b GlyLeuSerProTyrTyrGluValLeuPheIleIleGln++ 1694417 : GGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGgt............... : 1694460 206 : ron 3 >>>> ValLeuSerLeuTyrHisValGlyIleCysTyrIleCysPheAs : 219 p ..!|||!!!:!!|||||||||||||||||||||!!:|||||||| ++ThrLeuCysValTyrHisValGlyIleCysTyrMetCysPheAs 1694461 : ..........agACACTTTGCGTGTACCATGTCGGTATATGTTACATGTGCTTCGA : 1694909 220 : pAsnLeuLeuCysLeuIleAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnT : 238 ||||:!!||| !!|||:!:|||||||||!.!||||||||||||||||||||||||| pAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGlnPheArgIleLeuGlnT 1694910 : CAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAATTTCGTATCCTTCAAT : 1694966 239 : yrArgLeuLeuTyrLeuGlyGluThrIleGluLysGlnProAsnGluTyrAlaIle : 256 |||||!!!:!! !!|||.!!.!...!|||||||||||| !!:!!! ::: yrArgPheMetAsnLeuSerAsnValIleGluLysGlnThrAspGlyArgGluLeu 1694967 : ACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAACAGACGGTcgagaattg : 1695020 257 : LysGluThrLeuProSerAsnTyrLeuLysAsnTyrHisThrValPheLysCysCy : 275 ||| !!!!|||!:! ! :!! !:!! ! !!!.||| !!|| ---GluIleGlyTyrThrAsnPheThrValAspSerTyrLeuGlnLeuLysSerCy 1695021 : ---gaaattggtTACACAAATTTCACAGTCGATAGTTACTTACAATTGAAGAGTTG : 1695074 276 : sValArgGluHisGlnAspArgIleAsnTyrCysGlnArgLeuAsnAsnIlePheT : 294 ||||!:! ! ||||||! ! !! !..!||||||:!!!:!|||.!.|||||||||: sValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeuGluAsnIlePheS 1695075 : CGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTGGAGAACATATTTT : 1695131 295 : hrTyrIleValLeuGlyHisIleValValPheSerLeuLeuLeuCysLeuValGly : 312 !!! :!!|||||||||!!.:!::!! !!.!.:!!:!!:!!||||||||||||||| erLeuLeuValLeuGlyGlnValLeuPheLeuAlaMetValLeuCysLeuValGly 1695132 : CGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTACTTTGCCTCGTGGGA : 1695185 313 : PheGlnValLeuMet >>>> Target Intron 4 >>>> AlaAsnSerPro : 321 !:!|||:!!!!!:!! 415 bp .!!:!!|||||| TyrGlnLeuPheLeu++ ++ThrAspSerPro 1695186 : TATCAGCTATTTCTGgt.........................agACAGACTCACCA : 1695627 322 : ProThrArgArgLeuIlePheValPheHisIleValGlySerSerSerGlnLeuLe : 340 |||:!!|||!.!:!! !!!.|||.!!:!!:!:!.!|||!!!! !!!!||||||!! ProSerArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrLeuCysGlnLeuPh 1695628 : CCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTTTGTGTCAACTTTT : 1695684 341 : uLeuPheThrTyrSerCysAspThrLeuIleArgGluSerThrAsnIleGlyThrA : 359 !:!!|||||||||||||||||| !|||! !|||||||||! !:!!:!!.!!! !| eMetPheThrTyrSerCysAspGlyLeuThrArgGluSerMetAspValSerArgA 1695685 : TATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATGGACGTTAGCAGAG : 1695741 360 : laValTyrSerGlyProTrpThrHisLeuThrMetAspLysIleGlyLysLeuLeu : 377 |||||!:!:!! !!||||||.!!:!!||| !!||||||!:!! !|||||| !:!! laValPheAlaArgProTrpAlaAsnLeuProMetAspArgAsnGlyLysSerVal 1695742 : CTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAATGGGAAAAGTGTG : 1695795 378 : ArgLysAspLeuThrMetIleIleLeuArgSerSerLysProCysCysLeuThrAl : 396 |||:!!..!:!! !|||:!:|||:!!||||||!:!!:! !|||||||||||||| ArgGlnSerMetLeuMetValIleMetArgSerAsnArgCysCysCysLeuThrAl 1695796 : CGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTTGCTGCTTAACAGC : 1695852 397 : aSerGlyPhePheProValSerLeuGluThrCysThrLys >>>> Target In : 410 |||||||||||||||||||||||||||||||! !||| ! 319 aSerGlyPhePheProValSerLeuGluThrTyrThrGly++ 1695853 : CAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGgt.............. : 1695896 411 : tron 5 >>>> ValLeuSerThrAlaMetSerTyrPheThrLeuMetArgGlnS : 424 bp |||||||||||||||||||||||||||||||||:!!||||||| ++ValLeuSerThrAlaMetSerTyrPheThrLeuLeuArgGlnS 1695897 : ...........agGTCCTCAGCACTGCAATGTCATACTTTACACTACTGAGACAAT : 1696255 425 : er : 424 || er 1696256 : CG : 1696257 vulgar: gi|350397292|ref|XP_003484830.1| 25 424 . KQ414915.1 1692088 1696257 + 1055 M 60 180 5 0 2 I 0 1728 3 0 2 M 84 252 S 0 1 5 0 2 I 0 96 3 0 2 S 1 2 M 34 102 5 0 2 I 0 405 3 0 2 M 52 156 G 1 0 M 60 180 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1692089 1696257 1055 + . gene_id 2 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1692089 1692268 . + . KQ414915.1 exonerate:protein2genome:local exon 1692089 1692268 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1692269 1692270 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1692269 1694000 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1693999 1694000 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694001 1694253 . + . KQ414915.1 exonerate:protein2genome:local exon 1694001 1694253 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694254 1694255 . + . intron_id 2 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1694254 1694353 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1694352 1694353 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694354 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694354 1694457 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 5 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 5 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 4 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696257 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696257 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1692089 1696257 1055 + . alignment_id 2 ; Query gi|350397292|ref|XP_003484830.1| ; Align 1692089 26 180 ; Align 1694001 86 252 ; Align 1694356 171 102 ; Align 1694867 205 156 ; Align 1695023 258 180 ; Align 1695618 318 276 ; Align 1696213 410 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 877 Query range: 25 -> 423 Target range: 1710215 -> 1713321 26 : ThrLysAspPheAlaLeuLeuMetThrGlyPheLeuMetLysIleValGlyLeuTr : 44 ||| ! |||!!.!.!!!! !:!!|||..!.!.!!!:!!|||!!::!!|||||||| ThrAspAspLeuGlyPheSerValThrSerMetPheValLysMetIleGlyLeuTr 1710216 : ACTGACGACTTAGGTTTCAGCGTGACTTCGATGTTCGTGAAAATGATCGGATTGTG : 1710270 45 : pLeuThrLysAsnLysGluGluGluArgThrArgGlnLeuThrLeuMetTyrThrV : 63 |:!!.!!||||||:!! |||:!!!.!..!|||.!.:!!||||||.!.|||||| pMetAlaLysAsnGlnPheGluGlnHisValArgAsnValThrLeuPheTyrThrP 1710271 : GATGGCGAAAAATCAGTTCGAGCAACATGTCAGAAACGTGACGTTGTTCTACacat : 1710327 64 : alValAlaIleLeuPheGlyValTrpValGlnPheArgAspPheTyrTyrSerTrp : 81 ::: |||||| !!!::|||:!! !! !:!!.!.|||:!!|||||| hePhePheValSerPheGlyPheTyrValGluAlaThrAsnLeuTyrHisSerTrp 1710328 : tcttcttcgtttccttcGGATTCTACGTGGAAGCTACGAACCTGTACCACTCGTGG : 1710381 82 : ProAsnPheGlyAspCysAlaTyrThrAlaCysAsnIleLeu >>>> Target : 96 !:!!.!!.!!! !! !:!!! ! ! !!..!::: 46 GlyAspLeuSerValSerAsnHisIleGlnGlyGlyValGlu+- 1710382 : GGCGATCTCAGCGTGAGTAATCACATTCAGGGTGGTGttgaaga............ : 1710428 97 : Intron 1 >>>> CysLeuIleMetValLeuLeuLysLeuSerValValPheIl : 109 8 bp ! :!!|||||| ! !:!!|||:!!! !:!!:!!||||| -+SerValIleMetProAlaIleLysIleIleIleLeuPheIl 1710429 : .............tgTCGGTGATAATGCCCGCTATCAAAATAATCATCCTGTTTAT : 1710933 110 : eHisLysLysGluPheIleGluLeuLeuValTyrThrHisLysAsnPheTrpHisT : 128 |:!!|||:!!||||||.!!...|||:!!|||||||||.!.::!.!.||| !:!! eAsnLysGluGluPhePheArgLeuIleValTyrThrGluArgGlnPheMetAsnG 1710934 : CAACAAGGAGGAGTTTTTCCGTTTGATCGTGTACACAGAGCGACAATTCATGAACG : 1710990 129 : hrAsnTyrSerTyrAsnGluLeuLeuLeuLeuGlnAsnCysArgLysIleSerIle : 146 !:!!|||!:! ! :!!||| ! !:!!:!! :!!|||!:!::::!:!!!! ! lyAspTyrAsnGluAspGluArgLysIleValPheAspCysLysArgLeuCysThr 1710991 : GGGATTACAACGAGGACGAGAGGAAGATTGTGTTCGATTGTAAACGCCTGTGTACA : 1711044 147 : ValCysIleSerLeuIleAsnValCysAlaGlnGlyThrValPheGlyTyrValLe : 165 !!! !! !!!!!!!:!!::: ! .!! !..! !|||.!!..!||||||:! PhePheThrCysPheLeuSerSerValThrLeuSerCysValLeuSerTyrValVa 1711045 : TTCTTCACTTGTTTCCTCTCATCTGTGACTTTATCGTGCGTTCTCTCTTACGTCGT : 1711101 166 : uThrProIleVal{G} >>>> Target Intron 2 >>>> {lu}AsnIleG : 173 !||||||||| !{ } 119 bp { !}||||||| lThrProIleTyr{M}++ ++{et}AsnIleG 1711102 : CACTCCAATTTAC{A}gt.........................ag{TG}AATATTG : 1711244 174 : lyArgAsnTyrSerAspArgValLeuProPheArgMetTrpLeuAspLeuProLeu : 191 |||||||| ! |||||||||:!!|||||||||!:!||||||:!!|||:!!||| ! lyArgAsnGluSerAspArgIleLeuProPheLysMetTrpIleAspIleProThr 1711245 : GAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTGGATTGATATACCGACA : 1711298 192 : ThrValThrProTyrTyrGluIleLeuPheValLeuGln >>>> Target Int : 205 :!!:!!|||||||||:::||||||...|||...|||||| 546 b SerMetThrProTyrPheGluIlePhePheThrLeuGln++ 1711299 : TCGATGACACcgtattttgaaatattcttcaccTTACAGgt............... : 1711342 206 : ron 3 >>>> ValLeuSerLeuTyrHisValGlyIleCysTyrIleCysPheAs : 219 p ||||||||| !|||!!.:!!|||:!: !!||| !|||||||| ++ValLeuSerAlaTyrGlnIleGlyValSerTyrGlyCysPheAs 1711343 : ..........agGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGGTTGCTTCGA : 1711928 220 : pAsnLeuLeuCysLeuIleAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnT : 238 ||||:!!||||||:!!!!:||||||||| !||||||||||||||||||||||||: pAsnValLeuCysIleMetAsnLeuHisLeuAlaThrGlnPheArgIleLeuGlnH 1711929 : CAACGTTCTATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAATACTGCAAC : 1711985 239 : yrArgLeuLeuTyrLeuGlyGluThrIleGluLysGlnProAsnGluTyrAlaIle : 256 !!||||||:!! !!:!!..!! !! ...|||||| !! ||| ! !.! ! isArgLeuValAsnIleAsnGlyLeuLysSerLysGlnThrProGluLysGlyGlu 1711986 : ATAGACTGGTGAATATAAACGGTCTGAAGAGCAAACAGACACCGGAGAAAGGTGAA : 1712039 257 : LysGluThrLeuProSer<->AsnTyrLeuLysAsnTyrHisThrValPheLysCy : 274 ! !..!! !:!! !||| .!.!:! ! ! |||! !:!! !||||||||| ! ThrSerIleIleAspSerThrGluPheAlaAspAsnSerTyrAspValPheLysAr 1712040 : ACGTCGATTATAGATTCGACAGAATTTGCGGATAACTCTTACGACGTTTTCAAAAG : 1712096 275 : sCysValArgGluHisGlnAspArgIleAsnTyrCysGlnArgLeuAsnAsnIleP : 293 |||||||||:!!||||||..!! !!!: !!:!|||::::::|||......:::| gCysValArgGlnHisGlnSerLeuMetAlaPheCysGluLysLeuGluGluMetP 1712097 : ATGCGTTCGTCAACATCAATCTCTGATGGCTTTCTgcgagaaactcgaagaaatgT : 1712153 294 : heThrTyrIleValLeuGlyHisIleValValPheSerLeuLeuLeuCysLeuVal : 311 ||!:! |||:!!||||||!!.:!::!!|||||||||:!!!!!:!!||||||! ! heSerMetIleIleLeuGlyGlnLeuLeuValPheSerIlePheMetCysLeuAsp 1712154 : TCAGTATGATTATACTGGGGCAATTGTTAGTGTTCAGTATTTTTATGTGTCTCGAC : 1712207 312 : GlyPheGlnValLeuMet >>>> Target Intron 4 >>>> AlaAsnSer : 320 ! !! !|||||||||:!! 142 bp !!..!:!! ValCysGlnValLeuLeu++ ++ProGlyAla 1712208 : GTGTGCCAAGTACTTCTGgt.........................agCCAGGTGCA : 1712376 321 : ProProThrArgArgLeuIlePheValPheHisIleValGlySerSerSerGlnLe : 339 !! ! !!:!!:!:::||||||...||||||::!!.!|||!!!! !!!!||||| SerValGlyLysGlnMetIlePheThrPheHisLeuAlaGlyCysMetCysGlnLe 1712377 : TCTGTGGGTAAACAGAtgattttcacgtttcacctAGCGGGATGTATGTGTCAATT : 1712433 340 : uLeuLeuPheThrTyrSerCysAspThrLeuIleArgGluSerThrAsnIleGlyT : 358 ||||:!!|||||||||||||||||| !:!!|||! !|||||| !|||:!: ! uLeuMetPheThrTyrSerCysAspCysIleIleThrGluSerLeuAsnValThrG 1712434 : GCTGATGTTTACGTACAGCTGCGATTGTATAATAACGGAAAGTTTGAACGTGACGG : 1712490 359 : hrAlaValTyrSerGlyProTrpThrHisLeuThrMetAspLysIleGlyLysLeu : 376 !|||||||||..!||||||||| !!!.!||| !!|||..!! !! !|||!:!:!! luAlaValTyrAspGlyProTrpProArgLeuProMetSerThrArgGlyArgMet 1712491 : AAGCGGTGTACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGAAGAATG : 1712544 377 : LeuArgLysAspLeuThrMetIleIleLeuArgSerSerLysProCysCysLeuTh : 395 :!!||||||||||||! !:!::!!|||:!!||||||!!! !|||||||||||||| IleArgLysAspLeuIleLeuValIleIleArgSerArgValProCysCysLeuTh 1712545 : ATAAGGAAGGATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTGCTTGAC : 1712601 396 : rAlaSerGlyPhePheProValSerLeuGluThrCysThrLys >>>> Target : 410 ||||!!!||||||||| !:!!||||||||||||! !|||||| 6 rAlaArgGlyPhePheValIleSerLeuGluThrTyrThrLys++ 1712602 : CGCCAGAGGATTCTTCGTAATATCTTTGGAAACGTATACGAAGgt........... : 1712648 411 : Intron 5 >>>> ValLeuSerThrAlaMetSerTyrPheThrLeuMetArgG : 423 34 bp |||:!!|||||||||:!!|||||||||||||||:!:|||| ++ValIleSerThrAlaValSerTyrPheThrLeuLeuArgG 1712649 : ..............agGTTATAAGTACAGCAGTGTCGTACTTCACACTGTTAAGGC : 1713319 424 : ln : 423 || ln 1713320 : AA : 1713321 vulgar: gi|350397292|ref|XP_003484830.1| 25 423 . KQ414915.1 1710215 1713321 + 877 M 70 210 5 0 2 I 0 464 3 0 2 M 74 222 S 0 1 5 0 2 I 0 115 3 0 2 S 1 2 M 34 102 5 0 2 I 0 542 3 0 2 M 58 174 G 0 3 M 55 165 5 0 2 I 0 138 3 0 2 M 92 276 5 0 2 I 0 630 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1710216 1713321 877 + . gene_id 3 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1710216 1710425 . + . KQ414915.1 exonerate:protein2genome:local exon 1710216 1710425 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1710426 1710427 . + . intron_id 1 ; splice_site "ga" KQ414915.1 exonerate:protein2genome:local intron 1710426 1710893 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1710892 1710893 . + . intron_id 0 ; splice_site "TG" KQ414915.1 exonerate:protein2genome:local cds 1710894 1711116 . + . KQ414915.1 exonerate:protein2genome:local exon 1710894 1711116 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711117 1711118 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711117 1711235 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1711234 1711235 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711236 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711236 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712227 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712228 1712229 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712228 1712369 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1712368 1712369 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1712370 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712370 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 5 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 5 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 4 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713321 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713321 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1710216 1713321 877 + . alignment_id 3 ; Query gi|350397292|ref|XP_003484830.1| ; Align 1710216 26 210 ; Align 1710894 96 222 ; Align 1711238 171 102 ; Align 1711886 205 174 ; Align 1712063 263 165 ; Align 1712370 318 276 ; Align 1713280 410 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 624 Query range: 169 -> 423 Target range: 1706998 -> 1709237 170 : GluAsnIleGlyArgAsnTyrSerAspArgValLeuProPheArgMetTrpLeuAs : 188 |||!::||||||:::||| |||||||||:!!||| ! !!!.!.!.|||:!!|| GluSerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAs 1706999 : GAAAgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGA : 1707053 189 : pLeuProLeuThrValThrProTyrTyrGluIleLeuPheValLeuGln >>>> : 205 |!!!||| !|||:!!||||||||||||||||||||||||..!! !||| pPheProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707054 : CTTTCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt..... : 1707106 206 : Target Intron 1 >>>> ValLeuSerLeuTyrHisValGlyIleCysTyrI : 216 276 bp |||!!!! !:!! :!!||| !!||| !!|||: ++ValPheIleValMetTyrValCysIleSerTyrL 1707107 : ....................agGTTTTTATCGTAATGTACGTTTGCATAAGCTACC : 1707413 217 : leCysPheAspAsnLeuLeuCysLeuIleAsnLeuHisAlaAlaThrGlnPheArg : 234 !!|||.!!||||||!!!||||||:!!||||||||||||.!!||||||||||||||| euCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArg 1707414 : TTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGA : 1707467 235 : IleLeuGlnTyrArgLeuLeuTyrLeuGlyGluThrIleGluLysGlnProAsnGl : 253 ||||||||||||||||||! ! !!:!! !!! .!!! !|||:::... ... IleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAspLys-- 1707468 : ATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcgataaa-- : 1707524 254 : uTyrAlaIleLysGluThrLeuProSerAsnTyrLeuLysAsnTyrHisThrValP : 272 |||...::: |||||||||! !:!! !||| .!! !| -------IleSerLysLysThrProSerAsnSerAspGluCysTyr---AlaLysP 1707525 : -------atttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTAC---GCTAAGT : 1707569 273 : heLysCysCysValArgGluHisGlnAspArgIleAsnTyrCysGlnArgLeuAsn : 290 ||||| !|||:!!!:!:!!||||||! ! !|||.!.||||||.!...!|||.!. heLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGln 1707570 : TCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAA : 1707623 291 : AsnIlePheThrTyrIleValLeuGlyHisIleValValPheSerLeuLeuLeuCy : 309 .!.:!:||| !! .!!||||||!.!!!.:!::!!:!!||||||||||||:!!|| GluValPheGlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCy 1707624 : GAGGTGTTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTG : 1707680 310 : sLeuValGlyPheGlnValLeuMet >>>> Target Intron 2 >>>> Al : 318 ||||! !|||!:! :!!:!!||| 457 bp ! sLeuAspGlyTyr---LeuValMet++ ++Gl 1707681 : CCTCGATGGATAT---TTGGTGATGgt.........................agGA : 1708161 319 : aAsnSerProProThrArgArgLeuIlePheValPheHisIleValGlySerSerS : 337 !:!!!!!||| !! !!:!||||||! !|||:!!||||||:!!..!|||!!! !! uAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuC 1708162 : AGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGT : 1708218 338 : erGlnLeuLeuLeuPheThrTyrSerCysAspThrLeuIleArgGluSerThrAsn : 355 !!|||||||||:!!|||||||||||||||||| !||||||||||||||| !||| ysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsn 1708219 : GCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAAC : 1708272 356 : IleGlyThrAlaValTyrSerGlyProTrpThrHisLeuThrMetAspLysIleGl : 374 :!:!.!!.!|||:!!|||..! !! !!|||! !|||||| !!||||||!:! !|| ValAlaAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGl 1708273 : GTGGCCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGG : 1708329 375 : yLysLeuLeuArgLysAspLeuThrMetIleIleLeuArgSerSerLysProCysC : 393 |::!:!!||||||||||||||||||.!.:!!||| !||||||!!! !||||||| yArgMetLeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCysC 1708330 : GCGAATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCT : 1708386 394 : ysLeuThrAlaSerGlyPhePheProValSerLeuGluThrCysThrLys >>>> : 410 |||||||||||!!!|||||||||||||||||||||||||||! !|||..! ysLeuThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708387 : GTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt.... : 1708439 411 : Target Intron 3 >>>> ValLeuSerThrAlaMetSerTyrPheThrLeu : 420 759 bp :!!|||||||||||| !||||||||||||||| ++IleLeuSerThrAlaAlaSerTyrPheThrLeu 1708440 : .....................agATTTTAAGTACCGCAGCGTCATACTTCACACTG : 1709226 421 : MetArgGln : 423 :!:|||:!! LeuArgLys 1709227 : CTACGAAAA : 1709237 vulgar: gi|350397292|ref|XP_003484830.1| 169 423 . KQ414915.1 1706998 1709237 + 624 M 35 105 5 0 2 I 0 272 3 0 2 M 48 144 G 3 0 M 13 39 G 1 0 M 44 132 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1706999 1709237 624 + . gene_id 4 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1706999 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1706999 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 5 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709237 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709237 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1706999 1709237 624 + . alignment_id 4 ; Query gi|350397292|ref|XP_003484830.1| ; Align 1706999 170 105 ; Align 1707380 205 144 ; Align 1707524 256 39 ; Align 1707563 270 132 ; Align 1707695 315 9 ; Align 1708161 318 276 ; Align 1709196 410 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 429 Query range: 256 -> 423 Target range: 1688469 -> 1690079 257 : LysGluThrLeuProSerAsnTyrLeuLysAsnTyrHisThrValPheLysCysCy : 275 :!!..!||| ! !!!!.!.||| !!!.!!.! !:!!||| !.!.! ! !|| GluArgThrAsnMetThrGluTyrThrAsnLysCysTyrThrLysLeuIleAspCy 1688470 : GAGCGAACGAACATGACCGAATACACGAACAAATGTTACACCAAGCTGATAGATTG : 1688524 276 : sValArgGluHisGlnAspArgIleAsnTyrCysGlnArgLeuAsnAsnIlePheT : 294 |:!!!:!.!.||||||... !|||.!.!:!||| !!:!|||.!.|||:!:!:!| sIleLysAsnHisGlnSerLeuIleGluPheCysValLysLeuGluAsnValTyrT 1688525 : CATCAAAAATCATCAGTCGTTGATCGAGTTCTGCGTGAAACTCGAGAACGTGTACA : 1688581 295 : hrTyrIleValLeuGlyHisIleValValPheSerLeuLeuLeuCysLeuValGly : 312 ||! ! !:!!||||||||||||||||||||||||||||||:!!|||!!!! ! ! hrLeuThrIleLeuGlyHisIleValValPheSerLeuLeuMetCysPheAspThr 1688582 : CGTTGACTATACTCGGCCACATAGTGGTCTTCAGCTTGTTGATGTGCTTCGACACG : 1688635 313 : PheGlnValLeuMet >>>> Target Intron 1 >>>> AlaAsnSerPro : 321 !:!:!!|||:!!:!! 816 bp |||!!. !||| TyrGluValValLeu++ ++AlaLysValPro 1688636 : TACGAGGTAGTTCTGgt.........................agGCAAAGGTACCT : 1689478 322 : ProThrArgArgLeuIlePheValPheHisIleValGlySerSerSerGlnLeuLe : 340 !!|||! !||||||||||||:!!||||||!!::!!||||||! !! !!..::::: ThrThrThrArgLeuIlePheLeuPheHisMetIleGlySerPheIleHisIleIl 1689479 : ACCACGACGCGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCacataat : 1689535 341 : uLeuPheThrTyrSerCysAspThrLeuIleArgGluSerThrAsnIleGlyThrA : 359 :...|||||||||||||||! ! !||||||..!||||||! !:!!|||!.!|||| ePhePheThrTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleAlaThrA 1689536 : tttcttcacgtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCAACAG : 1689592 360 : laValTyrSerGlyProTrpThrHisLeuThrMetAspLysIleGlyLysLeuLeu : 377 ||..!|||:!!||| !|||||| !||| !!|||:!!|||:!!||||||:!!:!! laThrTyrAlaGlyMetTrpThrValLeuProMetAsnLysValGlyLysMetIle 1689593 : CAACGTATGCAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAATGATA : 1689646 378 : ArgLysAspLeuThrMetIleIleLeuArgSerSerLysProCysCysLeuThrAl : 396 ||| !:!!:!!! !:!:!!:! !:!!||||||! !:!!|||||||||:!!||||| ArgGlyAsnMetLysLeuMetThrValArgSerLeuGlnProCysCysIleThrAl 1689647 : CGAGGAAATATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAACTGC : 1689703 397 : aSerGlyPhePheProValSerLeuGluThrCysThrLys >>>> Target In : 410 |.!!|||||||||||||||||||||:!!|||..!||| ! 293 aGlyGlyPhePheProValSerLeuLysThrAlaThrAla++ 1689704 : TGGTGGATTCTTTCCTGTCTCCTTGAAAACTGCTACCGCGgt.............. : 1689747 411 : tron 2 >>>> ValLeuSerThrAlaMetSerTyrPheThrLeuMetArgGln : 423 bp :!!:!!|||:!!.!!||||||||||||||||||||||||:!! ++LeuMetSerSerThrMetSerTyrPheThrLeuMetArgGlu 1689748 : ...........agCTAATGAGTTCCACAATGTCGTATTTCACGCTCATGAGAGAG : 1690079 vulgar: gi|350397292|ref|XP_003484830.1| 256 423 . KQ414915.1 1688469 1690079 + 429 M 61 183 5 0 2 I 0 812 3 0 2 M 92 276 5 0 2 I 0 289 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688470 1690079 429 + . gene_id 5 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688470 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688470 1688652 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690079 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690079 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688470 1690079 429 + . alignment_id 5 ; Query gi|350397292|ref|XP_003484830.1| ; Align 1688470 257 183 ; Align 1689469 318 276 ; Align 1690038 410 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 397 Query range: 25 -> 240 Target range: 1680280 -> 1682058 26 : ThrLysAspPheAlaLeuLeuMetThrGlyPheLeuMetLysIleValGlyLeuTr : 44 |||||| !!|||:!!:!!! !:!:||| !!.!.||||||||||||:!!|||!!!|| ThrLysTyrPheSerIleArgLeuThrArgIleLeuMetLysIleIleGlyPheTr 1680281 : ACGAAATACTTTTCCATTCGACTCACACGGATACTCATGAAAATCATAGGCTTCTG : 1680335 45 : pLeuThrLysAsnLysGluGluGluArgThrArgGlnLeuThrLeuMetTyrThrV : 63 | !..!:!!!..!:!..!|||:!!! !! ! !!:!:!!!.!! !:!!|||! !: pAsnValGlnThrArgArgGluGlnLeuIleLeuArgValAsnTyrLeuTyrMetL 1680336 : GAATGTTCAGACAAGAAGGGAACAGCTGATATTGCGAGTCAACTATCTGTACATGT : 1680392 64 : alValAlaIleLeuPheGlyValTrpValGlnPheArgAspPheTyrTyrSerTrp : 81 !!:!!!.!:!!! ! ! ..!:!! :!!:!!!!. !|||.!!||||||!!! !! euLeuValLeuSerValSerIleThrIleGluLeuLeuAspLeuTyrTyrCysArg 1680393 : TGCTCGTTCTTTCTGTATCTATAACAATCGAATTGTTAGATCTTTATTATTGCCGG : 1680446 82 : ProAsnPheGly >>>> Target Intron 1 >>>> AspCysAlaTyrThr : 90 ! !:!!!!. ! 849 bp ....!!|||||| HisAspLeuTyr++ ++AlaAlaThrTyrThr 1680447 : CATGATTTATATgt.........................aggcAGCGACGTACACT : 1681322 91 : AlaCysAsnIleLeuCysLeuIleMetValLeuLeuLysLeuSerValValPheIl : 109 |||||||||! :!! |||.!!:!::!!|||:!!||| ! !||| !! || AlaCysAsnThrIleProLeuPheValIleLeuMetLysThrValValPheThrIl 1681323 : GCTTGCAACACGATACCACTTTTCGTAATACTAATGAAGACTGTTGTATTCACGAT : 1681379 110 : eHisLysLysGluPheIleGluLeuLeuValTyrThrHisLysAsnPheTrpHisT : 128 |!..::!||||||.!.:!: !|||:!!! !!:!.!!!!.||| !!||||||||| eArgArgLysGluIleLeuTrpLeuIleGluPheAlaGlnLysTyrPheTrpHisA 1681380 : TCGACGAAAAGAAATACTGTGGCTGATCGAATTTGCCCAAAAATACTTTTGGCACG : 1681436 129 : hrAsnTyrSerTyrAsnGluLeuLeuLeuLeuGlnAsnCysArgLysIleSerIle : 146 !!!.:!!||| ! !! ! ! ! !:!!.!.||| ! !|||! !:!!:!! spLysHisSerSerPheGlyLysLysAlaMetAspAsnLeuAspLysArgAlaLeu 1681437 : ACAAGCACAGCAGCTTTGGAAAAAAGGCCATGGACAACCTTGACAAGAGAGCCCTA : 1681490 147 : ValCysIleSerLeuIleAsnValCysAlaGlnGlyThrValPheGlyTyrValLe : 165 :!!! !!!:|||! !.!!!.!:!! ! ! !.!|||||| !! !|||||||| IleTyrMetSerSerPheThrIleLeuIleTyrAlaThrValValIleTyrValLe 1681491 : ATATATATGTCCTCTTTCACTATCCTAATTTATGCAACAGTCGTTATATACGTGTT : 1681547 166 : uThrProIleVal{G} >>>> Target Intron 2 >>>> {lu}AsnIleG : 173 |:!!||||||:!!{|} 161 bp {||}||||||| uSerProIleLeu{G}++ ++{lu}AsnIleG 1681548 : GTCTCCAATTCTT{G}gt.........................ag{aG}AACATCG : 1681732 174 : lyArgAsnTyrSerAspArgValLeuProPheArgMetTrpLeu<->AspLeuPro : 190 ||!:!!:! !!..!!!:|||:!!|||||||||! !.!. ! :!! :!!|||||| lyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAsnLeuPro 1681733 : GGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAACTTGCCT : 1681786 191 : LeuThrValThrProTyrTyrGluIleLeuPheValLeuGln >>>> Target : 205 !:!!:!!|||||||||||||||||||||||||||:!!:!! 12 ThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681787 : ACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt............ : 1681833 206 : Intron 3 >>>> ValLeuSerLeuTyrHisValGlyIleCysTyrIleCysPh : 218 0 bp ..!||||||:!! ||| !|||||||||!:! !||||| ++ThrLeuSerValValHisSerGlyIleCysPheCysCysPh 1681834 : .............agACATTATCTGTGGTGCATTCGGGAATTTGTTTCTGTTGTTT : 1681990 219 : eAspAsnLeuLeuCysLeuIleAsnLeuHisAlaAlaThrGlnPheArgIleLeuG : 237 |||||||!!!||||||:!!:!:!:!:!!|||!.!!.! !||||||!:!||||||| eAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLysIleLeuG 1681991 : CGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAGATTTTAC : 1682047 238 : lnTyrArgLeu : 240 || !!!:!||| lnAsnLysLeu 1682048 : AAAACAAACTC : 1682058 vulgar: gi|350397292|ref|XP_003484830.1| 25 240 . KQ414915.1 1680280 1682058 + 397 M 60 180 5 0 2 I 0 845 3 0 2 M 84 252 S 0 1 5 0 2 I 0 157 3 0 2 S 1 2 M 17 51 G 0 3 M 17 51 5 0 2 I 0 116 3 0 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1680281 1682058 397 + . gene_id 6 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1680281 1680460 . + . KQ414915.1 exonerate:protein2genome:local exon 1680281 1680460 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1680461 1680462 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1680461 1681309 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681308 1681309 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1681310 1681562 . + . KQ414915.1 exonerate:protein2genome:local exon 1681310 1681562 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681563 1681564 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681563 1681723 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1681722 1681723 . + . intron_id 1 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1681724 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681724 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682058 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682058 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1680281 1682058 397 + . alignment_id 6 ; Query gi|350397292|ref|XP_003484830.1| ; Align 1680281 26 180 ; Align 1681310 86 252 ; Align 1681726 171 51 ; Align 1681780 188 51 ; Align 1681951 205 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 396 Query range: 203 -> 317 Target range: 1702013 -> 1702352 204 : GlnValLeuSerLeuTyrHisValGlyIleCysTyrIleCysPheAspAsnLeuLe : 222 |||||||||||||||||||||||||||:!!|||||||||||||||||||||||||| GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 223 : uCysLeuIleAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuL : 241 |||||||!!:|||||||||||||||||||||||||||||||||||||||||||||! uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 242 : euTyrLeuGlyGluThrIleGluLysGlnProAsnGluTyrAlaIleLysGluThr : 259 ! !!||||||!!:|||! !..!|||||| !:!!!!: !!! ! !!..! !.!! erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1702179 260 : LeuProSerAsnTyrLeuLysAsnTyrHisThrValPheLysCysCysValArgGl : 278 ||| |||..!!:! !:!!|||! !:!!! !!.!|||||| !|||||||||:! Leu---SerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGl 1702180 : CTG---TCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACA : 1702233 279 : uHisGlnAspArgIleAsnTyrCysGlnArgLeuAsnAsnIlePheThrTyrIleV : 297 !||||||:!!!.!|||!..||||||!!.|||||||||.!.||||||||| !|||| nHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleV 1702234 : ACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTG : 1702290 298 : alLeuGlyHisIleValValPheSerLeuLeuLeuCysLeuValGlyPheGlnVal : 315 ||||||||||||||:!!|||||||||||||||:!!||||||||||||||||||||| alLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnVal 1702291 : TACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTG : 1702344 316 : LeuMet : 317 |||:!! LeuVal 1702345 : CTCGTG : 1702352 vulgar: gi|350397292|ref|XP_003484830.1| 203 317 . KQ414915.1 1702013 1702352 + 396 M 57 171 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1702352 396 + . gene_id 7 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702014 1702352 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702352 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1702352 396 + . alignment_id 7 ; Query gi|350397292|ref|XP_003484830.1| ; Align 1702014 204 171 ; Align 1702185 262 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 365 Query range: 321 -> 416 Target range: 1702971 -> 1703256 322 : ProThrArgArgLeuIlePheValPheHisIleValGlySerSerSerGlnLeuLe : 340 |||.!!|||||||||! !|||||||||||||||||||||||| !!!!|||||||| ProAlaArgArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLe 1702972 : CCAGCGAGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATT : 1703026 341 : uLeuPheThrTyrSerCysAspThrLeuIleArgGluSerThrAsnIleGlyThrA : 359 |||||||||||||||||||||| !||||||..!|||||||||||||||||||||| uLeuPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrA 1703027 : GCTATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTG : 1703083 360 : laValTyrSerGlyProTrpThrHisLeuThrMetAspLysIleGlyLysLeuLeu : 377 ||:!!||| !|||||||||! !|||||| !!||||||||| !|||!:! !||| laIleTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeu 1703084 : CGATATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTG : 1703137 378 : ArgLysAspLeuThrMetIleIleLeuArgSerSerLysProCysCysLeuThrAl : 396 |||!:!||||||||||||:!!|||:!!||||||!!!||| !! !!||||||||||| ArgArgAspLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAl 1703138 : AGAAGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGC : 1703194 397 : aSerGlyPhePheProValSerLeuGluThrCysThrLysValLeuSerThrAlaM : 415 |||||||||||||||||||||||||||||||||||||! !|||!!!!:! !:!!. aSerGlyPhePheProValSerLeuGluThrCysThrThrValPheAsnPheSerP 1703195 : CAGCGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATTTCTCAT : 1703251 416 : etSer : 416 !.||| heSer 1703252 : TCTCT : 1703256 vulgar: gi|350397292|ref|XP_003484830.1| 321 416 . KQ414915.1 1702971 1703256 + 365 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702972 1703256 365 + . gene_id 8 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702972 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1702972 1703256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702972 1703256 365 + . alignment_id 8 ; Query gi|350397292|ref|XP_003484830.1| ; Align 1702972 322 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 312 -> 410 Target range: 1682523 -> 1682814 313 : PheGlnValLeuMetAlaAsnSerProProThrArgArgLeuIlePheValPheHi : 331 ||| ||| !!.!|||.!! ! !! !!:!||||||:!:|||:!! !:! PhePheVal***LysValAsnGlyValLeuMetLysArgLeuLeuPheLeuAsnTy 1682524 : ttctttgtttaaaaGGTGAACGGTGTATTGATGAAACGATTGTTGTTCCTAAATTA : 1682578 332 : sIleValGlySerSerSerGlnLeuLeuLeuPheThrTyrSerCysAspThrLeuI : 350 !.!!:!!|||.!! !! |||:::...|||...||| !:!|||:!! !:!!! rPheLeuGlyGlyValIleGlnIlePheLeuIleThrLeuAsnCysAsnAspIleM 1682579 : CTTTCTCGGTGGAGTGATacagatatttttaataacccTAAATTGCAACGACATAA : 1682635 351 : leArgGluSerThrAsnIleGlyThrAlaValTyrSerGlyProTrpThrHisLeu : 368 !:..!:!!||| ! !||||||||||||:!!|||||| !! !||| !... etGluGlnSerGlyAlaIleGlyThrAlaIleTyrSerCysAsnTrpGluArgAsn 1682636 : TGGAGCAAAGTGGCGCTATAGGAACAGCGATCTACAGTTGTAATTGGGAGAGGAAt : 1682689 369 : ThrMetAspLysIleGlyLysLeuLeuArgLysAspLeuThrMetIleIleLeuAr : 387 ... ::: ... :!! !!!|||||||||:!!! !!!::!!!!::!!|| ValTyrAsnHisPheTyrGln---PheArgLysAspMetMetIleValMetValAr 1682690 : gtttataatcatttttaccAG---TTCAGAAAGGATATGATGATTGTAATGGTACG : 1682743 388 : gSerSerLysProCysCysLeuThrAlaSerGlyPhePheProValSerLeuGluT : 406 |:!!!.!:::||||||! !:!!:!!|||:!! !|||||||||:!!|||||||||: gAlaLysArgProCysTyrIleSerAlaAlaLysPhePheProIleSerLeuGluS 1682744 : AGCGAAACGTCCTTGCTACATTTCAGCAGCGAAATTCTTTCCAATCTCCCTTGAAT : 1682800 407 : hrCysThrLysVal : 410 !!! !||||||||| erPheThrLysVal 1682801 : CGTTCACGAaggta : 1682814 vulgar: gi|350397292|ref|XP_003484830.1| 312 410 . KQ414915.1 1682523 1682814 + 167 M 63 189 G 1 0 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682524 1682814 167 + . gene_id 9 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1682524 1682814 . + . KQ414915.1 exonerate:protein2genome:local exon 1682524 1682814 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1682524 1682814 167 + . alignment_id 9 ; Query gi|350397292|ref|XP_003484830.1| ; Align 1682524 313 189 ; Align 1682713 377 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 170 -> 205 Target range: 1688056 -> 1688161 171 : AsnIleGlyArgAsnTyrSerAspArgValLeuProPheArgMetTrpLeuAspLe : 189 |||!!:.!!|||||| ! |||||||||||||||||||||!:!||||||:!!|||! AsnMetSerArgAsnLysSerAspArgValLeuProPheLysMetTrpValAspTr 1688057 : AATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTGGGTCGATTG : 1688111 190 : uProLeuThrValThrProTyrTyrGluIleLeuPheValLeuGlnVal : 205 !||||||:!!! !|||||||||||||||:!::!!|||..!!!!|||||| pProLeuSerAspThrProTyrTyrGluLeuMetPheThrPheGlnVal 1688112 : GCCGCTATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAGGTA : 1688161 vulgar: gi|350397292|ref|XP_003484830.1| 170 205 . KQ414915.1 1688056 1688161 + 134 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688057 1688161 134 + . gene_id 10 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1688057 1688161 . + . KQ414915.1 exonerate:protein2genome:local exon 1688057 1688161 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688057 1688161 134 + . alignment_id 10 ; Query gi|350397292|ref|XP_003484830.1| ; Align 1688057 171 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 21 -> 81 Target range: 1685754 -> 1685934 22 : GluAlaSerTyrThrLysAspPheAlaLeuLeuMetThrGlyPheLeuMetLysIl : 40 :!!|||!!! ! !!:!|||.!!:!!||| ||||||:::|||:: GlnAlaThrLysTyrArgAspIleSerLeuLysCysGlyIlePheLeuLeuLysLe 1685755 : CAGGCGACAAAATACAGGGATATTTCCCTCAAgtgtggaatttttcttttgaaatt : 1685809 41 : eValGlyLeuTrpLeuThrLysAsnLysGluGluGluArgThrArgGlnLeuThrL : 59 :||||||||||||:!!:!!! !|||!..! ||||||||| !|||::!!!!|||| uValGlyLeuTrpMetSerMetAsnSerValGluGluArgArgArgArgPheThrL 1685810 : agtCGGCCTCTGGATGTCCATGAACAGCGTCGAGGAGCGTCGAAGGAGGTTCACGT : 1685866 60 : euMetTyrThrValValAlaIleLeuPheGlyValTrpValGlnPheArgAspPhe : 77 ||.!. :!!||| !!|||:!!! !!:!||||||!::|||.!. ! !.!|||.!! euPheGlySerValPheAlaLeuSerTyrGlyValTyrValAsnValAsnAspIle 1685867 : TGTTCGGATCAGTTTTCGCCCTTTCTTACGGCGTTTACGTGAACGTAAACGATATT : 1685920 78 : TyrTyrSerTrp : 81 !:!!|||!:: LeuHisSerPhe 1685921 : CTTCACAGCTTC : 1685934 vulgar: gi|350397292|ref|XP_003484830.1| 21 81 . KQ414915.1 1685754 1685934 + 121 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1685755 1685934 121 + . gene_id 11 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1685755 1685934 . + . KQ414915.1 exonerate:protein2genome:local exon 1685755 1685934 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1685755 1685934 121 + . alignment_id 11 ; Query gi|350397292|ref|XP_003484830.1| ; Align 1685755 22 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 265 -> 319 Target range: 1677734 -> 1677896 266 : LysAsnTyrHisThrValPheLysCysCysValArgGluHisGlnAspArgIleAs : 284 |||.!. |||::: |||:!!|||..!||| ! ! !|||:! LysGlnMetSerGlnLysPheGluLysCysLeuArgArgHisTyrLeuLeuIleAs 1677735 : AAGCAAATGTCGcagaaattcgagaaatgcTTGCGTCGACACTATTTGCTCATTGA : 1677789 285 : nTyrCysGlnArgLeuAsnAsnIlePheThrTyrIleValLeuGlyHisIleValV : 303 !||| :!!...|||||||||:::|||! !|||! !:!!||| !!!.!!::!!. pTyrValGluGluLeuAsnAsnLeuPheLysTyrThrLeuLeuLeuGlnMetMetT 1677790 : CTACGTAGAGgaattgaataatttgttCAAATACACCCTTCTGTTACAGATGATGA : 1677846 304 : alPheSerLeuLeuLeuCysLeuValGlyPheGlnValLeuMetAlaAsn : 319 .!! |||||||||:!!|||:!! !|||!:!:!! !|||:!!!.!!:! hrSerSerLeuLeuIleCysMetSerGlyTyrGluCysLeuValValSer 1677847 : CCTCGAGTTTGTTAATCTGTATGTCTGGTTACGAATGTTTAGTGGTGAGT : 1677896 vulgar: gi|350397292|ref|XP_003484830.1| 265 319 . KQ414915.1 1677734 1677896 + 102 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1677735 1677896 102 + . gene_id 12 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1677735 1677896 . + . KQ414915.1 exonerate:protein2genome:local exon 1677735 1677896 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1677735 1677896 102 + . alignment_id 12 ; Query gi|350397292|ref|XP_003484830.1| ; Align 1677735 266 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 894 Query range: 1 -> 410 Target range: 1704885 -> 1709258 2 : LysSerAsnMetSerLeuLysTyrHisLysAspValSerPheSerValAlaValPh : 20 ::! !!..|||!!!! !||| ! :!!!:!||||||||| ! ||||||.!!!.!|| ArgValArgMetThrSerLysLysAsnArgAspValSerValSerValThrAlaPh 1704886 : CGAGTCAGAATGACTTCGAAGAAGAACAGGGACGTATCAGTGAGCGTCACAGCTTT : 1704940 21 : eTyrLeuLysIleValGlyLeuTrpLeuSerThrSerLeuAlaGluLysTrpPheA : 39 |||||||||||||:!!|||!!!||||||:!! !!!!! !! !|||||| ! | eTyrLeuLysIleIleGlyPheTrpLeuAlaAspThrTyrGluGluLysArgArgA 1704941 : CTACTTGAAAATCATCGGCTTCTGGTTAGCTGACACTTACGAGGAGAAACGTCGAA : 1704997 40 : rgAsnAlaLeuValThrTyrThrValLeuAlaIleIlePheAsnMetTrpMetGln : 57 ||!!. ! ! !!.!! !|||:!!||| !:!!!!:! ! !:!! !:!::!! rgLysPheAlaGlnAsnCysThrIleLeuMetLeuMetCysAlaValLeuLeuGlu 1704998 : GAAAGTTCGCGCAGAATTGCACGATACTTATGCTTATGTGCGCTGTGCTGCTTGAG : 1705051 58 : LeuArgGlyLeuTyrPheSerTrpGlyAspPheSerVal{S} >>>> Target : 71 :!!|||! !:!!||| !! !||||||||||||.!!|||{|} 138 ValArgAspIleTyrHisIleTrpGlyAspPheGlyVal{S}++ 1705052 : GTGAGGGATATCTATCACATCTGGGGAGATTTCGGCGTA{A}gt............ : 1705096 72 : Intron 1 >>>> {er}----ThrTyrIleAlaCysAsnSerLeuGlyLeuPhe : 82 7 bp {||}####..!|||:!! !||||||! !||| !:!! ! ++{er}####ValTyrValMetCysAsnIleLeuThrValGly 1705097 : .............ag{GC}CGTTGTTTACGTAATGTGCAACATTCTAACAGTGGGC : 1706517 83 : MetAspLeuPheLysLeuLeuIleIlePheIleHisLysLysLysPheLeuTyrLe : 101 !!:..!|||||||||:!!|||:!! .!.! |||:::||||||||| || IleSerLeuPheLysIleLeuValSerMetArgSerLysGluLysPheLeuGluLe 1706518 : ATAAGTTTGTTCAAGATCTTGGTCTCGATGAGGagtaaggaaaaatttttggaatt : 1706574 102 : uIleValTyrMetGlnLysAsnPheTrpHisPheAsnTyrAsnGlnTyrLysLysS : 120 |||| ||| ::!! !||||||||||||! :!!|||:!!..! ! :!!:!!! uIleLysTyrAlaArgThrAsnPheTrpHisSerAspTyrAspSerGlnGluGlnM 1706575 : aattaaatacgcCAGAACGAATTTCTGGCACTCGGATTATGACTCGCAGGAGCAAA : 1706631 121 : erValLeuAlaAspAlaLysArgMetCysIleTyrPheValCysValPheSerPhe : 138 !:!!:!! !!!:..!|||||| |||! !!:!.!!:!!|||||||||!:!||| etIleValAsnGluCysLysArgSerCysThrPheLeuIleCysValPheAsnPhe 1706632 : TGATTGTGAACGAGTGTAAACGTTCTTGTACATTCCTCATATGCGTGTTTAATTTC : 1706685 139 : LeuSerGlnSerThrIlePheSerTyrIlePheMetProLeuIle{S} >>>> T : 154 !!!:!!.!..!!|||:!:! !.!!||||||.!!! !|||:!!:!!{.} PheAlaAsnGlyThrValSerGlyTyrIleIleArgProIleVal{G}++ 1706686 : TTCGCTAATGGGACAGTGTCTGGATACATAATCAGGCCAATTGTA{G}gt...... : 1706736 155 : arget Intron 2 >>>> {er}AsnIleGlyLysAsnLysSerAspArgValP : 165 266 bp {.!}!::||||||||||||:::|||||||||:!!! ++{lu}SerIleGlyLysAsnGluSerAspArgIleL 1706737 : ...................ag{AA}AgtattggaaaaaatgaatcagACAGGATAC : 1707032 166 : roIlePheHisMetHisLeuAspLeuProLeuAsnValSerProTyrTyrGluMet : 183 !||| !!:!!.!. :!!|||!!!||| !!.!:!!!!!||||||||||||!!: euIleValAsnPheTrpIleAspPheProThrThrMetThrProTyrTyrGluIle 1707033 : TTATAGTCAACTTCTGGATTGACTTTCCGACAACCATGACACCATACTATGAGATA : 1707086 184 : ThrTyrLeuIleGln >>>> Target Intron 3 >>>> AlaLeuThrLeu : 192 !!:! ! ||| 276 bp !.!!!!! !:!! LeuPheThrSerGln++ ++ValPheIleVal 1707087 : TTATTTACGTCGCAGgt.........................agGTTTTTATCGTA : 1707389 193 : TyrGlnValGlyValCysTyrLeuCysValAspAsnIlePheCysIleMetCysLe : 211 ! ||| !!:!! !!|||||||||:!!||||||.!!.!.|||!!:!!: !|| MetTyrValCysIleSerTyrLeuCysIleAspAsnPheLeuCysMetIleAsnLe 1707390 : ATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTCTGTGCATGATCAATCT : 1707446 212 : uHisValAlaSerGlnPheArgIleLeuGlnTyrArgIleAlaAsnValLeuSerL : 230 ||||..!|||!!!||||||||||||||||||||||||:!::!!||||||! !.!! uHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnValCysGlyA 1707447 : ACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGTG : 1707503 231 : euArgAspLysValLysPheAspGlnAspThrAsnLeuAspSerSerAspGluPhe : 248 !!.!!!:::: ... ...! !..!!:!|||||||||! ! laAsnGluArgSerAspLysIleSerLysLysThrProSerAsnSerAspGluCys 1707504 : CAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATGC : 1707557 249 : TyrAlaIlePheArgLysCysIleGlnGlnHisGlnAlaLeuIleArgPheCysTh : 267 ||||||! |||!:!!!.|||||||||||||||||||||||||||..!!:!|||!. TyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAs 1707558 : TACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAA : 1707614 268 : rThrLeuGluGluIlePheThrValIleIleLeuGlyGlnValLeuThrPheSerI : 286 ! !|||:!!|||:!:||| !:!!.!!:!:|||!.!||||||||| !||||||: nGluLeuGlnGluValPheGlyLeuPheValLeuAlaGlnValLeuLeuPheSerL 1707615 : CGAACTTCAAGAGGTGTTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTT : 1707671 287 : leLeuIleCysPheValGlyTyrGlnAlaLeuLeu >>>> Target Intron : 298 !:|||!!:|||.!!! !|||||| !:!!:!! 457 bp euLeuMetCysLeuAspGlyTyr---LeuValMet++ 1707672 : TGTTAATGTGCCTCGATGGATAT---TTGGTGATGgt................... : 1707706 299 : 4 >>>> ValLysLeuSerLeuSerTrpArgIleSerLeuValSerPheLeuThr : 313 ! ! ! ! !!:!!! ! !|||:!!!!!!!!:!!! ! !|||||| ++GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThr 1707707 : ......agGAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACG : 1708206 314 : ThrAsnIleCysGlnLeuTrpIlePheThrTyrSerCysAsnAlaLeuIleGluGl : 332 ! !:!:|||||||||! !!!:|||||||||||||||:!!..!||||||..!|| GlyCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGl 1708207 : GGATGCCTGTGCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGA : 1708263 333 : uSerMetAsnThrAlaAsnAlaAlaTyrAlaAlaProTrpIleTyrLeuSerMetA : 351 ||||:!!|||..!||||||||| !|||! !..! !!||||||:!!||| !!|||| uSerLeuAsnValAlaAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetA 1708264 : AAGCTTGAACGTGGCCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGG : 1708320 352 : spLysPheGlyGluMetThrArgLysAspLeuGlnLeuValLeuMetArgSerArg : 369 ||!:!! !|||..!||| !|||||||||||| !!!!|||:!! ||||||||| spArgSerGlyArgMetLeuArgLysAspLeuThrPheValIleGlyArgSerArg 1708321 : ACAGATCTGGGCGAATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGA : 1708374 370 : ArgAlaCysTyrLeuThrAlaCysGlyPhePheProIleSerLeuGluThrPheTh : 388 ! !!|||! !||||||||||||||||||||||||:!:||||||||||||!:!|| ValProCysCysLeuThrAlaCysGlyPhePheProValSerLeuGluThrTyrTh 1708375 : GTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACAC : 1708431 389 : rLys >>>> Target Intron 5 >>>> IleMetSerSerAlaMetSerTy : 397 |..! 759 bp |||:!:|||!!!||| !||||| rSer++ ++IleLeuSerThrAlaAlaSerTy 1708432 : TTCGgt.........................agATTTTAAGTACCGCAGCGTCATA : 1709217 398 : rPheThrIleLeuLysGlnArgThrValAspThrIleGlu : 410 |||||||:!:|||::!:!!!:! !!.!!!:! !:!!||| rPheThrLeuLeuArgLysGlnGluAlaGluIleValGlu 1709218 : CTTCACACTGCTACGAAAACAAGAAGCAGAAATAGTTGAA : 1709258 vulgar: gi|815927557|ref|XP_003494290.2| 1 410 . KQ414915.1 1704885 1709258 + 894 M 69 207 S 0 1 5 0 2 I 0 1383 3 0 2 S 1 2 F 0 4 M 82 246 S 0 1 5 0 2 I 0 262 3 0 2 S 1 2 M 34 102 5 0 2 I 0 272 3 0 2 M 105 315 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1704886 1709258 894 + . gene_id 1 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1704886 1705093 . + . KQ414915.1 exonerate:protein2genome:local exon 1704886 1705093 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1705094 1705095 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1705094 1706480 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1706479 1706480 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1706481 1706733 . + . KQ414915.1 exonerate:protein2genome:local exon 1706481 1706733 . + . insertions 0 ; deletions 0 ; frameshifts 4 KQ414915.1 exonerate:protein2genome:local splice5 1706734 1706735 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1706734 1706999 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1706998 1706999 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707000 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707000 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 5 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 5 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 4 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709258 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709258 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1704886 1709258 894 + . alignment_id 1 ; Query gi|815927557|ref|XP_003494290.2| ; Align 1704886 2 207 ; Align 1706487 72 246 ; Align 1707002 155 102 ; Align 1707380 189 315 ; Align 1707695 295 9 ; Align 1708161 298 276 ; Align 1709196 390 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 599 Query range: 151 -> 406 Target range: 1694346 -> 1696263 152 : LeuIleSerAsnIleGlyLysAsnLysSerAspArgValProIlePheHisMetHi : 170 !!!:!!:!!|||:!!|||||||||:!!|||!!:|||:!! ! !|||:!!||| PheLeuAlaAsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTr 1694347 : TTTTTAGCAAATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTG : 1694401 171 : sLeuAspLeuProLeuAsnValSerProTyrTyrGluMetThrTyrLeuIleGln : 189 :!!|||!!!||| !...:!!|||||||||||||||:!: !!:!:!!|||||| pValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGln+ 1694402 : GGTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGg : 1694458 190 : >>>> Target Intron 1 >>>> AlaLeuThrLeuTyrGlnValGlyValC : 198 409 bp .!!||| !:!!|||!!.||||||:!!| + ++ThrLeuCysValTyrHisValGlyIleC 1694459 : t.........................agACACTTTGCGTGTACCATGTCGGTATAT : 1694894 199 : ysTyrLeuCysValAspAsnIlePheCysIleMetCysLeuHisValAlaSerGln : 216 |||||:!!||| !!|||||||||.!! !!:!!:!! !||||||||||||!!!||| ysTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGln 1694895 : GTTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAA : 1694948 217 : PheArgIleLeuGlnTyrArgIleAlaAsnValLeuSerLeuArgAspLysValLy : 235 |||||||||||||||||||||.!! !|||:!! !!:!:!!! !!!:||| !! PheArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLysGlnTh 1694949 : TTTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAAC : 1695005 236 : sPheAspGlnAspThrAsnLeuAspSerSerAsp<-><-><->GluPheTyrAlaI : 251 ! !! !:::::: ...::: ! !!!!:!! !!: !||| ! rAspGlyArgGluLeuGluIleGlyTyrThrAsnPheThrValAspSerTyrLeuG 1695006 : AGACGGTcgagaattggaaattggtTACACAAATTTCACAGTCGATAGTTACTTAC : 1695062 252 : lePheArgLysCysIleGlnGlnHisGlnAlaLeuIleArgPheCysThrThrLeu : 269 !!!.!:!!..|||:!:||| ! ||||||||||||! ! !!!:!|||! !! !||| lnLeuLysSerCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeu 1695063 : AATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTG : 1695116 270 : GluGluIlePheThrValIleIleLeuGlyGlnValLeuThrPheSerIleLeuIl : 288 |||.!.||||||:!!:!!:!!:!:||||||||||||||| !.!.:!!!!::!!:! GluAsnIlePheSerLeuLeuValLeuGlyGlnValLeuPheLeuAlaMetValLe 1695117 : GAGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTACT : 1695173 289 : eCysPheValGlyTyrGlnAlaLeuLeu >>>> Target Intron 2 >>>> : 298 !|||.!!|||||||||||| !!!!||| 415 bp uCysLeuValGlyTyrGlnLeuPheLeu++ + 1695174 : TTGCCTCGTGGGATATCAGCTATTTCTGgt.........................a : 1695616 299 : ValLysLeuSerLeuSerTrpArgIleSerLeuValSerPheLeuThrThrAsnI : 316 ..! ! ! ! !!! !||| ! !.!:!!.!!|||||| ! !|||.!! !!.!: +ThrAspSerProProSerArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrL 1695617 : gACAGACTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTT : 1695672 317 : leCysGlnLeuTrpIlePheThrTyrSerCysAsnAlaLeuIleGluGluSerMet : 334 !:|||||||||!::!!:|||||||||||||||:!!!.!|||! !..!||||||||| euCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGluSerMet 1695673 : TGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATG : 1695726 335 : AsnThrAlaAsnAlaAlaTyrAlaAlaProTrpIleTyrLeuSerMetAspLysPh : 353 :!!..!::!!..|||!.!!:!||| !|||||| ! !!||| !!||||||!:! AspValSerArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAspArgAs 1695727 : GACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAA : 1695783 354 : eGlyGluMetThrArgLysAspLeuGlnLeuValLeuMetArgSerArgArgAlaC : 372 !|||:!!! ..!|||:!!..!:!!! !:!!|||:!!|||||||||!.!|||..!| nGlyLysSerValArgGlnSerMetLeuMetValIleMetArgSerAsnArgCysC 1695784 : TGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTT : 1695840 373 : ysTyrLeuThrAlaCysGlyPhePheProIleSerLeuGluThrPheThrLys > : 390 ||! !||||||||| !!||||||||||||:!!||||||||||||!:!||| ! ysCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrGly++ 1695841 : GCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGgt. : 1695896 391 : >>> Target Intron 3 >>>> IleMetSerSerAlaMetSerTyrPheThr : 399 319 bp :!!:!:|||!!!|||||||||||||||||| ++ValLeuSerThrAlaMetSerTyrPheThr 1695897 : ........................agGTCCTCAGCACTGCAATGTCATACTTTACA : 1696240 400 : IleLeuLysGlnArgThrVal : 406 :!!|||!:!||| !|||:!! LeuLeuArgGlnSerThrMet 1696241 : CTACTGAGACAATCGACTATG : 1696263 vulgar: gi|815927557|ref|XP_003494290.2| 151 406 . KQ414915.1 1694346 1696263 + 599 M 37 111 5 0 2 I 0 405 3 0 2 M 58 174 G 0 9 M 51 153 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694347 1696263 599 + . gene_id 2 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694347 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694347 1694457 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 2 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696263 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696263 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694347 1696263 599 + . alignment_id 2 ; Query gi|815927557|ref|XP_003494290.2| ; Align 1694347 152 111 ; Align 1694867 189 174 ; Align 1695050 247 153 ; Align 1695618 298 276 ; Align 1696213 390 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 327 Query range: 7 -> 153 Target range: 1697512 -> 1698799 8 : LysTyrHisLysAspValSerPheSerValAlaValPheTyrLeuLysIleValGl : 26 ..!:!! !|||||| !!:!!.!.! !:!!.!! !|||! :!!||||||||||| SerHisThrLysAspPheAlaLeuLeuMetThrSerPheLeuMetLysIleValGl 1697513 : TCGCACACCAAAGATTTTGCTCTGTTAATGACGTCGTTTTTAATGAAGATCGTCGG : 1697567 27 : yLeuTrpLeuSerThrSerLeuAlaGluLysTrpPheArgAsnAlaLeuValThrT : 45 ||||||||||:!!! !..! ! !|||:!! ! |||... ! !:!!! !| yLeuTrpLeuAlaLysAspSerLysGluGluArgLysArgArgTyrThrLeuIleT 1697568 : TCTTTGGTTAGCGAAAGACAGCAAGGAGGAACGCAAGCGTCGGTACACTTTGATCT : 1697624 46 : yrThrValLeuAlaIleIlePheAsnMetTrpMetGlnLeuArgGlyLeuTyrPhe : 63 ||||||||:!!||||||:!:|||...:!!|||:!!|||!!!|||! !!!!|||!:! yrThrValValAlaIleLeuPheGlyValTrpValGlnPheArgAspPheTyrTyr 1697625 : ATACGGTGGTCGCGATTTTGTTTGGAGTGTGGGTGCAGTTCAGAGACTTCTATTAC : 1697678 64 : SerTrpGlyAspPheSer >>>> Target Intron 1 >>>> ValSerThr : 72 |||||| !:!!|||.!! 849 bp !!!!.!! SerTrpProAsnPheGly++ ++AspCysAla 1697679 : TCCTGGCCGAATTTTGGCgt.........................aggACTGTGCT : 1698554 73 : TyrIleAlaCysAsnSerLeuGlyLeuPheMetAspLeuPheLysLeuLeuIleIl : 91 |||! !|||||||||! !||| !!|||.!!|||! |||!!.||||||!!!:!!:! TyrThrAlaCysAsnIleLeuCysLeuIleMetValLeuLeuLysLeuPheValVa 1698555 : TACACCGCTTGTAACATTCTCTGCCTGATTATGGTACTGTTAAAGCTGTTCGTTGT : 1698611 92 : ePheIleHisLysLysLysPheLeuTyrLeuIleValTyrMetGlnLysAsnPheT : 110 !|||||||||!:!|||:!!|||:!! ! |||:::||||||||| |||||||||| lPheIleHisArgLysGluPheIleGluLeuLeuValTyrMetTyrLysAsnPheT 1698612 : ATTCATACACAGGAAAGAATTCATCGAACTgcttgtatatatgtacaaaaattttt : 1698668 111 : rpHisPheAsnTyrAsnGlnTyrLysLysSerValLeuAlaAspAlaLysArgMet : 128 |||||.!!||||||:!! !!:!! ! !:!!||| !|||..!!:!|||!!: rpHisLeuAsnTyrAspCysAsnGluLeuLeuLeuLeuGlnAspCysArgArgIle 1698669 : ggcACCTCAATTACGATTGCAACGAACTACTACTGCTGCAAGACTGCAGAAGAATT : 1698722 129 : CysIleTyrPheValCysValPheSerPheLeuSerGlnSerThrIlePheSerTy : 147 !!! ! ! !:!! :!!.!!!:!|||! !:!!|||.!!|||||| !!||||| SerThrIleCysIleThrLeuIleAsnPheCysAlaGlnGlyThrIleValSerTy 1698723 : AGCACTATATGTATCACGTTGATTAACTTCTGTGCTCAAGGCACAATTGTCAGCTA : 1698779 148 : rIlePheMetProLeuIle : 153 |:!:.!.! |||:!!||| rValLeuThrProIleIle 1698780 : CGTGCTAACACCTATTATA : 1698799 vulgar: gi|815927557|ref|XP_003494290.2| 7 153 . KQ414915.1 1697512 1698799 + 327 M 62 186 5 0 2 I 0 845 3 0 2 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1697513 1698799 327 + . gene_id 3 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1697513 1697698 . + . KQ414915.1 exonerate:protein2genome:local exon 1697513 1697698 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1697699 1697700 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1697699 1698547 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1698546 1698547 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1698548 1698799 . + . KQ414915.1 exonerate:protein2genome:local exon 1698548 1698799 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1697513 1698799 327 + . alignment_id 3 ; Query gi|815927557|ref|XP_003494290.2| ; Align 1697513 8 186 ; Align 1698548 70 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 283 Query range: 187 -> 299 Target range: 1702013 -> 1702358 188 : GlnAlaLeuThrLeuTyrGlnValGlyValCysTyrLeuCysValAspAsnIlePh : 206 |||!.!|||:!!||||||!!.|||||||||||||||:!!||| !!||||||:!!!! GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 207 : eCysIleMetCysLeuHisValAlaSerGlnPheArgIleLeuGlnTyrArgIleA : 225 .|||:!:||| !||||||!.!|||!!!||||||||||||||||||||||||:!!: uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 226 : laAsnValLeuSerLeuArgAspLysValLysPheAspGlnAspThrAsnLeuAsp : 243 !!|||:!! !..! !!.! ||| ! ! !|||.!.!!::!!!:! !! ! erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1702179 244 : SerSer<-><-><->AspGluPheTyrAlaIlePheArgLysCysIleGlnGlnHi : 259 !||| !!:.!.! !||| ! |||!:!!!.|||:!!!:!||||| LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHi 1702180 : CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACA : 1702236 260 : sGlnAlaLeuIleArgPheCysThrThrLeuGluGluIlePheThrValIleIleL : 278 |||| !! !|||! !!:!||| !! !|||.!.||||||||||||||||||:!!| sGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValL 1702237 : TCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTAC : 1702293 279 : euGlyGlnValLeuThrPheSerIleLeuIleCysPheValGlyTyrGlnAlaLeu : 296 |||||!!.:!!|||..!||||||:!!|||||||||.!.||||||!:!|||!.!||| euGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeu 1702294 : TCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTC : 1702347 297 : LeuValLys : 299 :!!|||::: ValValArg 1702348 : GTGGTACGT : 1702358 vulgar: gi|815927557|ref|XP_003494290.2| 187 299 . KQ414915.1 1702013 1702358 + 283 M 58 174 G 0 9 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1702358 283 + . gene_id 4 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702014 1702358 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702358 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1702358 283 + . alignment_id 4 ; Query gi|815927557|ref|XP_003494290.2| ; Align 1702014 188 174 ; Align 1702197 246 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 277 Query range: 187 -> 297 Target range: 1699632 -> 1699971 188 : GlnAlaLeuThrLeuTyrGlnValGlyValCysTyrLeuCysValAspAsnIlePh : 206 |||!.!|||:!!||||||!!.|||||||||||||||:!!||| !!||||||:!!!! GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1699633 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1699687 207 : eCysIleMetCysLeuHisValAlaSerGlnPheArgIleLeuGlnTyrArgIleA : 225 .|||:!:||| !||||||!.!|||!!!||||||||||||||||||||||||:!!: uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1699688 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1699744 226 : laAsnValLeuSerLeuArgAspLysValLysPheAspGlnAspThrAsnLeuAsp : 243 !!|||:!! !..! !!.! ||| ! ! !|||.!.!!::!!!:! !! ! erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1699745 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1699798 244 : SerSer<-><-><->AspGluPheTyrAlaIlePheArgLysCysIleGlnGlnHi : 259 !||| !!:.!.! !||| ! |||!:!!!.|||:!!!:!||||| LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHi 1699799 : CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACA : 1699855 260 : sGlnAlaLeuIleArgPheCysThrThrLeuGluGluIlePheThrValIleIleL : 278 |||| !! !|||! !!:!||| !! !|||.!.||||||||||||||||||:!!| sGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValL 1699856 : TCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTAC : 1699912 279 : euGlyGlnValLeuThrPheSerIleLeuIleCysPheValGlyTyrGlnAlaLeu : 296 |||||!!.:!!|||..!||||||:!!|||||||||.!.||||||!:!|||!.!||| euGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeu 1699913 : TCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTC : 1699966 297 : Leu : 297 :!! Val 1699967 : GTA : 1699971 vulgar: gi|815927557|ref|XP_003494290.2| 187 297 . KQ414915.1 1699632 1699971 + 277 M 58 174 G 0 9 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699633 1699971 277 + . gene_id 5 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1699633 1699971 . + . KQ414915.1 exonerate:protein2genome:local exon 1699633 1699971 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699633 1699971 277 + . alignment_id 5 ; Query gi|815927557|ref|XP_003494290.2| ; Align 1699633 188 174 ; Align 1699816 246 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 257 Query range: 183 -> 298 Target range: 1711870 -> 1712230 184 : ThrTyrLeuIleGlnAlaLeuThrLeuTyrGlnValGlyValCysTyrLeuCysVa : 202 ||| !!! !|||!.!|||:!! !||||||:!!|||||| !!||| !||| ! ThrThrPheAlaGlnValLeuSerAlaTyrGlnIleGlyValSerTyrGlyCysPh 1711871 : ACAACATTTGCACAGGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGGTTGCTT : 1711925 203 : lAspAsnIlePheCysIleMetCysLeuHisValAlaSerGlnPheArgIleLeuG : 221 !||||||:!!.!.||||||||| !||||||:!!|||!!!|||||||||||||||| eAspAsnValLeuCysIleMetAsnLeuHisLeuAlaThrGlnPheArgIleLeuG 1711926 : CGACAACGTTCTATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAATACTGC : 1711982 222 : lnTyrArgIleAlaAsnValLeuSerLeuArgAspLysValLysPheAspGln<-> : 239 ||:!!|||:!:!.!|||:!! !.!!|||!:!..!||| !! ! !!::!! lnHisArgLeuValAsnIleAsnGlyLeuLysSerLysGlnThrProGluLysGly 1711983 : AACATAGACTGGTGAATATAAACGGTCTGAAGAGCAAACAGACACCGGAGAAAGGT : 1712036 240 : AspThrAsnLeuAspSerSerAspGluPhe<-><-><-><->TyrAlaIlePheAr : 253 !!:|||::::!! ..!||| |||||| |||! !:!!|||!: GluThrSerIleIleAspSerThrGluPheAlaAspAsnSerTyrAspValPheLy 1712037 : GAAACGTCGATTATAGATTCGACAGAATTTGCGGATAACTCTTACGACGTTTTCAA : 1712093 254 : gLysCysIleGlnGlnHisGlnAlaLeuIleArgPheCysThrThrLeuGluGluI : 272 !!:!|||:!!!::|||||||||:!!|||!!: !|||||| |||||||||: sArgCysValArgGlnHisGlnSerLeuMetAlaPheCysGluLysLeuGluGluM 1712094 : AAGATGCGTTCGTCAACATCAATCTCTGATGGCTTTCTgcgagaaactcgaagaaa : 1712150 273 : lePheThrValIleIleLeuGlyGlnValLeuThrPheSerIleLeuIleCysPhe : 290 ::|||!:!:!!|||||||||||||||:!!|||..!|||||||||!!!!!:|||.!! etPheSerMetIleIleLeuGlyGlnLeuLeuValPheSerIlePheMetCysLeu 1712151 : tgTTCAGTATGATTATACTGGGGCAATTGTTAGTGTTCAGTATTTTTATGTGTCTC : 1712204 291 : ValGlyTyrGlnAlaLeuLeuVal : 298 ! !! !! !|||!.!||||||||| AspValCysGlnValLeuLeuVal 1712205 : GACGTGTGCCAAGTACTTCTGGTT : 1712230 vulgar: gi|815927557|ref|XP_003494290.2| 183 298 . KQ414915.1 1711870 1712230 + 257 M 55 165 G 0 3 M 10 30 G 0 12 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711871 1712230 257 + . gene_id 6 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1711871 1712230 . + . KQ414915.1 exonerate:protein2genome:local exon 1711871 1712230 . + . insertions 15 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711871 1712230 257 + . alignment_id 6 ; Query gi|815927557|ref|XP_003494290.2| ; Align 1711871 184 165 ; Align 1712039 239 30 ; Align 1712081 249 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 248 Query range: 304 -> 396 Target range: 1702980 -> 1703256 305 : ArgIleSerLeuValSerPheLeuThrThrAsnIleCysGlnLeuTrpIlePheTh : 323 |||:!!!!!!!!|||! ! !:!!..! !!:!:!!|||||||||! !:!!||||| ArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLeuLeuPheTh 1702981 : CGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATTGCTATTTAC : 1703035 324 : rTyrSerCysAsnAlaLeuIleGluGluSerMetAsnThrAlaAsnAlaAlaTyrA : 342 ||||||||||:!!!.!|||||||||||||||! !|||! !!.!!.!||| !||| rTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaIleTyrL 1703036 : CTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGATATACC : 1703092 343 : laAlaProTrpIleTyrLeuSerMetAspLysPheGlyGluMetThrArgLysAsp : 360 !!.!|||||||||:!!||| !!||||||||| !|||..!! ! !|||!:!||| euGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArgArgAsp 1703093 : TCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGAAGAGAC : 1703146 361 : LeuGlnLeuValLeuMetArgSerArgArgAlaCysTyrLeuThrAlaCysGlyPh : 379 ||| !:!!|||:!!:!:|||||||||!:!:!! !!! !||||||||| !!||||| LeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSerGlyPh 1703147 : TTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAGCGGATT : 1703203 380 : ePheProIleSerLeuGluThrPheThrLysIleMetSerSerAlaMetSer : 396 |||||||:!!||||||||||||! !|||! !:!!.!.!:!! !:!!.!.||| ePheProValSerLeuGluThrCysThrThrValPheAsnPheSerPheSer 1703204 : CTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATTTCTCATTCTCT : 1703256 vulgar: gi|815927557|ref|XP_003494290.2| 304 396 . KQ414915.1 1702980 1703256 + 248 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702981 1703256 248 + . gene_id 7 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702981 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1702981 1703256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702981 1703256 248 + . alignment_id 7 ; Query gi|815927557|ref|XP_003494290.2| ; Align 1702981 305 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 234 Query range: 289 -> 407 Target range: 1689444 -> 1690091 290 : PheValGlyTyrGlnAlaLeuLeuValLysLeuSerLeuSerTrpArgIleSerLe : 308 .!!:!!.!! ! ..!..!:!!! !!.!|||:!! !! !!!! !|||:!!! !!! IleIleSerGluSerCysIleGlnAlaLysValProThrThrThrArgLeuIlePh 1689445 : ATTATCAGTGAATCATGTATACAGGCAAAGGTACCTACCACGACGCGCCTCATATT : 1689499 309 : uValSerPheLeuThrThrAsnIleCysGlnLeuTrpIlePheThrTyrSerCysA : 327 !:!!! ! !:!!! ! !!:!.!! !!..::: ...|||||||||||||||. eLeuPheHisMetIleGlySerPheIleHisIleIlePhePheThrTyrSerCysG 1689500 : CTTATTCCACATGATCGGTAGCTTCATCCacataattttcttcacgtACAGTTGTG : 1689556 328 : snAlaLeuIleGluGluSerMetAsnThrAlaAsnAlaAlaTyrAlaAlaProTrp : 345 .!!.!||||||||||||||||||:!!! !|||!..|||.!!||||||!.! !||| lyGlyLeuIleGluGluSerMetAspIleAlaThrAlaThrTyrAlaGlyMetTrp 1689557 : GTGGTTTGATAGAAGAGAGTATGGATATTGCAACAGCAACGTATGCAGGAATGTGG : 1689610 346 : IleTyrLeuSerMetAspLysPheGlyGluMetThrArgLysAspLeuGlnLeuVa : 364 ! !||| !!|||:!!||| !!|||:!!|||! !||| !:!!:!!:!!|||:! ThrValLeuProMetAsnLysValGlyLysMetIleArgGlyAsnMetLysLeuMe 1689611 : ACGGTTTTGCCAATGAATAAAGTTGGCAAAATGATACGAGGAAATATGAAGTTAAT : 1689667 365 : lLeuMetArgSerArgArgAlaCysTyrLeuThrAlaCysGlyPhePheProIleS : 383 ! !:!:|||||| !!:! !!|||! !:!!|||||| !!||||||||||||:!!| tThrValArgSerLeuGlnProCysCysIleThrAlaGlyGlyPhePheProValS 1689668 : GACCGTAAGGTCGTTGCAACCGTGTTGCATAACTGCTGGTGGATTCTTTCCTGTCT : 1689724 384 : erLeuGluThrPheThrLys >>>> Target Intron 1 >>>> IleMetS : 392 |||||:!!||| !||| ! 293 bp :!!|||| erLeuLysThrAlaThrAla++ ++LeuMetS 1689725 : CCTTGAAAACTGCTACCGCGgt.........................agCTAATGA : 1690044 393 : erSerAlaMetSerTyrPheThrIleLeuLysGlnArgThrValAsp : 407 |||||.!!|||||||||||||||:!!:!!!:!:!!|||:!!!.!!!: erSerThrMetSerTyrPheThrLeuMetArgGluArgSerAlaGlu 1690045 : GTTCCACAATGTCGTATTTCACGCTCATGAGAGAGAGATCGGCTGAA : 1690091 vulgar: gi|815927557|ref|XP_003494290.2| 289 407 . KQ414915.1 1689444 1690091 + 234 M 100 300 5 0 2 I 0 289 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1689445 1690091 234 + . gene_id 8 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1689445 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689445 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690091 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690091 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1689445 1690091 234 + . alignment_id 8 ; Query gi|815927557|ref|XP_003494290.2| ; Align 1689445 290 300 ; Align 1690038 390 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 222 Query range: 315 -> 393 Target range: 1712423 -> 1712657 316 : IleCysGlnLeuTrpIlePheThrTyrSerCysAsnAlaLeuIleGluGluSerMe : 334 !!:||||||||| !!!:|||||||||||||||:!!..!:!!||| !||||||:! MetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleThrGluSerLe 1712424 : ATGTGTCAATTGCTGATGTTTACGTACAGCTGCGATTGTATAATAACGGAAAGTTT : 1712478 335 : tAsnThrAlaAsnAlaAlaTyrAlaAlaProTrpIleTyrLeuSerMetAspLysP : 353 !|||..!.!!.!.|||!.!|||! !!.!|||||| ! !||| !!|||..!! ! uAsnValThrGluAlaValTyrAspGlyProTrpProArgLeuProMetSerThrA 1712479 : GAACGTGACGGAAGCGGTGTACGATGGACCATGGCCACGTTTGCCAATGAGCACGA : 1712535 354 : heGlyGluMetThrArgLysAspLeuGlnLeuValLeuMetArgSerArgArgAla : 371 |||..!|||! !|||||||||||| !||||||:!!!!:||||||||| ! !! rgGlyArgMetIleArgLysAspLeuIleLeuValIleIleArgSerArgValPro 1712536 : GAGGAAGAATGATAAGGAAGGATTTGATACTCGTTATCATAAGATCGAGAGTACCT : 1712589 372 : CysTyrLeuThrAlaCysGlyPhePheProIleSerLeuGluThrPheThrLysIl : 390 |||! !||||||||| ! ||||||||| !|||||||||||||||!:!||||||:! CysCysLeuThrAlaArgGlyPhePheValIleSerLeuGluThrTyrThrLysVa 1712590 : TGTTGCTTGACCGCCAGAGGATTCTTCGTAATATCTTTGGAAACGTATACGAAGGT : 1712646 391 : eMetSerSer : 393 !!!:..!||| lIleAspSer 1712647 : AATTGACTCT : 1712657 vulgar: gi|815927557|ref|XP_003494290.2| 315 393 . KQ414915.1 1712423 1712657 + 222 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712424 1712657 222 + . gene_id 9 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1712424 1712657 . + . KQ414915.1 exonerate:protein2genome:local exon 1712424 1712657 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712424 1712657 222 + . alignment_id 9 ; Query gi|815927557|ref|XP_003494290.2| ; Align 1712424 316 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 301 -> 390 Target range: 1682550 -> 1682814 302 : LeuSerTrpArgIleSerLeuValSerPheLeuThrThrAsnIleCysGlnLeuTr : 320 |||! ! |||:!:! !!!!:!!!:!!:!!!! ! !...:!: |||::::: LeuMetLysArgLeuLeuPheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePh 1682551 : TTGATGAAACGATTGTTGTTCCTAAATTACTTTCTCGGTGGAGTGATacagatatt : 1682605 321 : pIlePheThrTyrSerCysAsnAlaLeuIleGluGluSerMetAsnThrAlaAsnA : 339 ::::...||| !:!||||||! !:!!!!:|||:!!||| !! !!.!!..| eLeuIleThrLeuAsnCysAsnAspIleMetGluGlnSerGlyAlaIleGlyThrA 1682606 : tttaataacccTAAATTGCAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAG : 1682662 340 : laAlaTyrAlaAlaProTrpIleTyrLeuSerMetAspLysPheGlyGluMetThr : 357 || !|||::!..! !||| ::: ||| :!!.!. laIleTyrSerCysAsnTrpGluArgAsnValTyrAsnHisPheTyrGlnPhe--- 1682663 : CGATCTACAGTTGTAATTGGGAGAGGAAtgtttataatcatttttaccAGTTC--- : 1682716 358 : ArgLysAspLeuGlnLeuValLeuMetArgSerArgArgAlaCysTyrLeuThrAl : 376 |||||||||:!!..!:!!|||:!!:!:|||:!!!:!||| !!||||||:!!:!!|| ArgLysAspMetMetIleValMetValArgAlaLysArgProCysTyrIleSerAl 1682717 : AGAAAGGATATGATGATTGTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGC : 1682770 377 : aCysGlyPhePheProIleSerLeuGluThrPheThrLysIle : 390 |... !|||||||||||||||||||||:!!|||||||||::: aAlaLysPhePheProIleSerLeuGluSerPheThrLysVal 1682771 : AGCGAAATTCTTTCCAATCTCCCTTGAATCGTTCACGAaggta : 1682814 vulgar: gi|815927557|ref|XP_003494290.2| 301 390 . KQ414915.1 1682550 1682814 + 157 M 55 165 G 1 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682551 1682814 157 + . gene_id 10 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1682551 1682814 . + . KQ414915.1 exonerate:protein2genome:local exon 1682551 1682814 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1682551 1682814 157 + . alignment_id 10 ; Query gi|815927557|ref|XP_003494290.2| ; Align 1682551 302 165 ; Align 1682716 358 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 1 -> 72 Target range: 1700437 -> 1700650 2 : LysSerAsnMetSerLeuLysTyrHisLysAspValSerPheSerValAlaValPh : 20 ::! !!..|||!!!! !||| ! :!!!:!||||||||| ! ||||||.!!!.!|| ArgValArgMetThrSerLysLysAsnArgAspValSerValSerValThrAlaPh 1700438 : CGAGTCAGAATGACTTCGAAGAAGAACAGGGACGTATCAGTGAGCGTCACAGCTTT : 1700492 21 : eTyrLeuLysIleValGlyLeuTrpLeuSerThrSerLeuAlaGluLysTrpPheA : 39 |||||||||||||:!!|||!!!||||||:!! !!!!! !! !|||||| ! | eTyrLeuLysIleIleGlyPheTrpLeuAlaAspThrTyrGluGluLysArgArgA 1700493 : CTACTTGAAAATCATCGGCTTCTGGTTAGCTGACACTTACGAGGAGAAACGTCGAA : 1700549 40 : rgAsnAlaLeuValThrTyrThrValLeuAlaIleIlePheAsnMetTrpMetGln : 57 ||!!. ! ! !!.!! !|||:!!||| !:!!!!:! ! !:!! !:!::!! rgLysPheAlaGlnAsnCysThrIleLeuMetLeuMetCysAlaValLeuLeuGlu 1700550 : GAAAGTTCGCGCAGAATTGCACGATACTTATGCTTATGTGCGCTGTGCTGCTTGAG : 1700603 58 : LeuArgGlyLeuTyrPheSerTrpGlyAspPheSerValSerThr : 72 :!!|||! !:!!||| !! !||||||||||||.!!||||||||| ValArgAspIleTyrHisIleTrpGlyAspPheGlyValSerThr 1700604 : GTGAGGGATATCTATCACATCTGGGGAGATTTCGGCGTAAGTACA : 1700650 vulgar: gi|815927557|ref|XP_003494290.2| 1 72 . KQ414915.1 1700437 1700650 + 148 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1700438 1700650 148 + . gene_id 11 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1700438 1700650 . + . KQ414915.1 exonerate:protein2genome:local exon 1700438 1700650 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1700438 1700650 148 + . alignment_id 11 ; Query gi|815927557|ref|XP_003494290.2| ; Align 1700438 2 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 0 -> 74 Target range: 1710188 -> 1710410 1 : MetLysSerAsnMetSerLeuLysTyrHisLysAspValSerPheSerValAlaVa : 19 ..!::!..!||||||!.!||| ! ! ! |||:!!.!!|||||||||.!! GlnArgAspAsnMetLysLeuPheLysThrAspAspLeuGlyPheSerValThrSe 1710189 : CAGCGAGACAACATGAAATTGTTCAAGACTGACGACTTAGGTTTCAGCGTGACTTC : 1710243 20 : lPheTyrLeuLysIleValGlyLeuTrpLeuSerThrSerLeuAlaGluLysTrpP : 38 !.!.!:!:!!|||!!::!!|||||||||:!!:!!! !!:!! ! !|||:!! rMetPheValLysMetIleGlyLeuTrpMetAlaLysAsnGlnPheGluGlnHisV 1710244 : GATGTTCGTGAAAATGATCGGATTGTGGATGGCGAAAAATCAGTTCGAGCAACATG : 1710300 39 : heArgAsnAlaLeuValThrTyrThrValLeuAlaIleIlePheAsnMetTrpMet : 56 !!||||||!.! !:!! !|||||| ... ::: |||....!.!:::!! alArgAsnValThrLeuPheTyrThrPhePhePheValSerPheGlyPheTyrVal 1710301 : TCAGAAACGTGACGTTGTTCTACacattcttcttcgtttccttcGGATTCTACGTG : 1710354 57 : GlnLeuArgGlyLeuTyrPheSerTrpGlyAspPheSerValSerThrTyrIle : 74 :!! !! !..!|||||| !||||||||||||.!!|||||||||!.!:!!||| GluAlaThrAsnLeuTyrHisSerTrpGlyAspLeuSerValSerAsnHisIle 1710355 : GAAGCTACGAACCTGTACCACTCGTGGGGCGATCTCAGCGTGAGTAATCACATT : 1710410 vulgar: gi|815927557|ref|XP_003494290.2| 0 74 . KQ414915.1 1710188 1710410 + 147 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1710189 1710410 147 + . gene_id 12 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1710189 1710410 . + . KQ414915.1 exonerate:protein2genome:local exon 1710189 1710410 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1710189 1710410 147 + . alignment_id 12 ; Query gi|815927557|ref|XP_003494290.2| ; Align 1710189 1 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 3 -> 73 Target range: 1692070 -> 1692280 4 : AsnMetSerLeuLysTyrHisLysAspValSerPheSerValAlaValPheTyrLe : 22 ..!||| !||| ! ! !||||||:!!|||.!! ! !:!! !!|||! :! GlyMetHisLeuValGlnSerLysAspIleSerIleValTrpSerPhePheLeuMe 1692071 : GGTATGCATTTAGTGCAGAGTAAAGATATCTCGATCGTTTGGTCGTTCTTTTTGAT : 1692125 23 : uLysIleValGlyLeuTrpLeuSerThrSerLeuAlaGluLysTrpPheArgAsnA : 41 !|||||||||||||||||||||:!!.!!..! !||||||:!! ! |||||| tLysIleValGlyLeuTrpLeuAlaAlaAspGluAlaGluGlnArgArgArgAsnP 1692126 : GAAAATCGTAGGTCTGTGGCTAGCCGCCGACGAGGCTGAACAACGTCGGAGAAATT : 1692182 42 : laLeuValThrTyrThrValLeuAlaIleIlePheAsnMetTrpMetGlnLeuArg : 59 ! !:!!! !||||||:!! !||||||.!!.!! ! !!! !!: !:!!||| heAlaLeuIleTyrThrLeuAsnAlaIlePheIleAlaSerCysIleAlaMetArg 1692183 : TCGCGCTGATTTACACGCTGAACGCGATTTTTATCGCTTCGTGTATAGCAATGAGA : 1692236 60 : GlyLeuTyrPheSerTrpGlyAspPheSerValSerThrTyr : 73 ! !:!!|||!:!|||||||||:!! ! !:!|||||||||!:: AspIleTyrTyrSerTrpGlyAsnValAsnValSerThrTrp 1692237 : GATATATACTATTCCTGGGGAAACGTGAACGTGAGTACTTGG : 1692280 vulgar: gi|815927557|ref|XP_003494290.2| 3 73 . KQ414915.1 1692070 1692280 + 140 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1692071 1692280 140 + . gene_id 13 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1692071 1692280 . + . KQ414915.1 exonerate:protein2genome:local exon 1692071 1692280 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1692071 1692280 140 + . alignment_id 13 ; Query gi|815927557|ref|XP_003494290.2| ; Align 1692071 4 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 184 -> 229 Target range: 1681938 -> 1682073 185 : TyrLeuIleGlnAlaLeuThrLeuTyrGlnValGlyValCysTyrLeuCysValAs : 203 ::: !:!:|||.!!|||:!!:!! !!. !|||:!!|||!:!! !||| !!|| PheThrLeuGlnThrLeuSerValValHisSerGlyIleCysPheCysCysPheAs 1681939 : ttcaCTTTGCAGACATTATCTGTGGTGCATTCGGGAATTTGTTTCTGTTGTTTCGA : 1681993 204 : pAsnIlePheCysIleMetCysLeuHisValAlaSerGlnPheArgIleLeuGlnT : 222 ||||.!!.!.||||||:!! !!:!!||||||!.!.!!||||||!:!||||||||| pAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLysIleLeuGlnA 1681994 : CAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAGATTTTACAAA : 1682050 223 : yrArgIleAlaAsnValLeuSer : 229 !!!:!:!! !!..||||||||| snLysLeuGlnThrValLeuSer 1682051 : ACAAACTCCAAACAGTATTGAGT : 1682073 vulgar: gi|815927557|ref|XP_003494290.2| 184 229 . KQ414915.1 1681938 1682073 + 119 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681939 1682073 119 + . gene_id 14 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1681939 1682073 . + . KQ414915.1 exonerate:protein2genome:local exon 1681939 1682073 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681939 1682073 119 + . alignment_id 14 ; Query gi|815927557|ref|XP_003494290.2| ; Align 1681939 185 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 4 -> 90 Target range: 1685751 -> 1686009 5 : MetSerLeuLysTyrHisLysAspValSerPheSerValAlaValPheTyrLeuLy : 23 |||..! !! ! ! :!!!:!|||:!!|||.!!!.. ...:::||| ||||| MetGlnAlaThrLysTyrArgAspIleSerLeuLysCysGlyIlePheLeuLeuLy 1685752 : ATGCAGGCGACAAAATACAGGGATATTTCCCTCAAgtgtggaatttttcttttgaa : 1685806 24 : sIleValGlyLeuTrpLeuSerThrSerLeuAlaGluLysTrpPheArgAsnAlaL : 42 |:::||||||||||||:!!|||! !!:! !!.!|||:!! ! |||!.. ! sLeuValGlyLeuTrpMetSerMetAsnSerValGluGluArgArgArgArgPheT 1685807 : attagtCGGCCTCTGGATGTCCATGAACAGCGTCGAGGAGCGTCGAAGGAGGTTCA : 1685863 43 : euValThrTyrThrValLeuAlaIleIlePheAsnMetTrpMetGlnLeuArgGly : 60 !:!! ! :!!|||!!!|||:!! !!:!..!:!:!:::!!.!.:!!!.!! ! hrLeuPheGlySerValPheAlaLeuSerTyrGlyValTyrValAsnValAsnAsp 1685864 : CGTTGTTCGGATCAGTTTTCGCCCTTTCTTACGGCGTTTACGTGAACGTAAACGAT : 1685917 61 : LeuTyrPheSerTrpGlyAspPheSerValSerThrTyrIleAlaCysAsnSerLe : 79 :!! ! !|||!::! !|||.!.|||||||||! ! ||| !!! ..!|||!! IleLeuHisSerPheAspAspLeuSerValSerMetArgIleLys***ArgSerPh 1685918 : ATTCTTCACAGCTTCGATGATCTGAGCGTGAGTATGAGAATTAAGTGACGTTCGTT : 1685974 80 : uGlyLeuPheMetAspLeuPheLysLeuLeuIle : 90 ! !:!!.!! !.!.:!!.!. :!!:!!||| eLysValIleAlaGlnIleMetPheValValIle 1685975 : CAAAGTAATTGCGCAAATCATGTTTGTCGTGATT : 1686009 vulgar: gi|815927557|ref|XP_003494290.2| 4 90 . KQ414915.1 1685751 1686009 + 104 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1685752 1686009 104 + . gene_id 15 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1685752 1686009 . + . KQ414915.1 exonerate:protein2genome:local exon 1685752 1686009 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1685752 1686009 104 + . alignment_id 15 ; Query gi|815927557|ref|XP_003494290.2| ; Align 1685752 5 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397295|ref|XP_003484831.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 1111 Query range: 0 -> 407 Target range: 1710200 -> 1713336 1 : MetSerPheLeuLysSerHisAspIleSerIleSerLeuThrSerThrPheMetLy : 19 |||!.!!!.!!!|||!!! !!|||:!!.!!.!!|||:!!||||||! !|||:!!|| MetLysLeuPheLysThrAspAspLeuGlyPheSerValThrSerMetPheValLy 1710201 : ATGAAATTGTTCAAGACTGACGACTTAGGTTTCAGCGTGACTTCGATGTTCGTGAA : 1710255 20 : sLeuIleGlyIleTrpThrSerLysAsnGlnMetGluArgArgValArgLeuIleT : 38 |:!!||||||:!:|||! !:!!|||||||||.!.|||!:!!.!|||||| !:!:| sMetIleGlyLeuTrpMetAlaLysAsnGlnPheGluGlnHisValArgAsnValT 1710256 : AATGATCGGATTGTGGATGGCGAAAAATCAGTTCGAGCAACATGTCAGAAACGTGA : 1710312 39 : hrLeuIleTyrAlaPheSerIleIleLeuPheAlaLeuTrpIleGluIleThrAsp : 56 |||||.!!|||...||| ...::: |||!.!!!!!:::!:||| !|||:!! hrLeuPheTyrThrPhePhePheValSerPheGlyPheTyrValGluAlaThrAsn 1710313 : CGTTGTTCTACacattcttcttcgtttccttcGGATTCTACGTGGAAGCTACGAAC : 1710366 57 : ThrTyrTyrSerPheAspAspLeuSer >>>> Target Intron 1 >>>> : 66 !|||:!!|||!::! !||||||||| 468 bp LeuTyrHisSerTrpGlyAspLeuSer++ ++ 1710367 : CTGTACCACTCGTGGGGCGATCTCAGCgt.........................ag : 1710862 67 : ThrArgIleTyrAsnValCysAsnIleLeuAlaValLeuMetProLeuLeuLysMe : 84 !! !:!:!:!:!!:!!|||!.!:!!|||:!!|||:!!|||||| !:!!|||!! AspThrLeuPheAspIleCysThrLeuLeuSerValIleMetProAlaIleLysIl 1710863 : GACACACTGTTCGACATATGCACTCTTCTGTCGGTGATAATGCCCGCTATCAAAAT : 1710918 85 : tThrValLeuLeuAlaHisLysGlnGluPhePheHisLeuIleValTyrThrGlnA : 103 :! !:!!|||!!! !:!!|||:!!|||||||||!.!|||||||||||||||:!!| eIleIleLeuPheIleAsnLysGluGluPhePheArgLeuIleValTyrThrGluA 1710919 : AATCATCCTGTTTATCAACAAGGAGGAGTTTTTCCGTTTGATCGTGTACACAGAGC : 1710975 104 : rgArgPheTrpHisGluAsnTyrAspGluAspGluLysLysIleTyrMetAspCys : 121 ||!:!||| !:!!! !:!!|||:!!|||||||||!:!|||||| .!.|||||| rgGlnPheMetAsnGlyAspTyrAsnGluAspGluArgLysIleValPheAspCys 1710976 : GACAATTCATGAACGGGGATTACAACGAGGACGAGAGGAAGATTGTGTTCGATTGT : 1711029 122 : LysArgLysCysThrValPheValCysPheValIlePheThrThrLysAlaThrLe : 140 |||||| !|||||| !!|||..!||||||:!! !! !..!||| !:!! !:! LysArgLeuCysThrPhePheThrCysPheLeuSerSerValThrLeuSerCysVa 1711030 : AAACGCCTGTGTACATTCTTCACTTGTTTCCTCTCATCTGTGACTTTATCGTGCGT : 1711086 141 : uIleCysTyrAlaLeuSerProIleLeu{G} >>>> Target Intron 2 >> : 150 !:!!! !|||!.!:!!!!!||||||! !{ } 119 bp lLeuSerTyrValValThrProIleTyr{M}++ 1711087 : TCTCTCTTACGTCGTCACTCCAATTTAC{A}gt....................... : 1711119 151 : >> {lu}AsnIleGlyArgAsnGluSerAspArgGluLeuProPheAsnMetTrp : 166 { !}||||||||||||||||||||||||||| !|||||||||!!.|||||| ++{et}AsnIleGlyArgAsnGluSerAspArgIleLeuProPheLysMetTrp 1711120 : ..ag{TG}AATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTGG : 1711283 167 : IleAspLeuProLeuThrAlaThrProTyrTyrGluIleThrLeuLeuLeuGln : 185 ||||||:!!||| !:!! !|||||||||:::|||||| ... |||||| IleAspIleProThrSerMetThrProTyrPheGluIlePhePheThrLeuGln++ 1711284 : ATTGATATACCGACATCGATGACACcgtattttgaaatattcttcaccTTACAGgt : 1711340 186 : >>>> Target Intron 3 >>>> LeuMetAlaLeuTyrTyrValGlyValGl : 194 546 bp :!!:!::!! !||| ! :!!||||||.! ++ValLeuSerAlaTyrGlnIleGlyValSe 1711341 : .........................agGTTTTATCCGCGTATCAAATTGGCGTGAG : 1711913 195 : yTyrPheCysPheAspAsnLeuLeuCysValMetSerLeuHisLeuAlaThrGlnP : 213 !||| !||||||||||||:!!||||||:!!|||!:!||||||||||||||||||| rTyrGlyCysPheAspAsnValLeuCysIleMetAsnLeuHisLeuAlaThrGlnP 1711914 : TTACGGTTGCTTCGACAACGTTCTATGCATCATGAACCTACACTTGGCCACTCAGT : 1711970 214 : heGlnIleLeuGlnTyrLysMetSerArgMetThrAspLeuThrAsnLysGluLys : 231 ||!:!|||||||||:!!!:!:!! !!.!!!:!.!! !|||! !!:!|||:!!! ! heArgIleLeuGlnHisArgLeuValAsnIleAsnGlyLeuLysSerLysGlnThr 1711971 : TTCGAATACTGCAACATAGACTGGTGAATATAAACGGTCTGAAGAGCAAACAGACA : 1712024 232 : GlyGluThrAsnProGlnLeuPheSerGlySerSer<-><->AlaAsnLysCysTy : 248 !|||! !..! ! !! !.!!! !! !|||!!! |||:!!!!.! !|| ProGluLysGlyGluThrSerIleIleAspSerThrGluPheAlaAspAsnSerTy 1712025 : CCGGAGAAAGGTGAAACGTCGATTATAGATTCGACAGAATTTGCGGATAACTCTTA : 1712081 249 : rThrAlaPheLysLysTyrIleGlnGlnHisGlnAlaLeuIleAlaTyrCysArgL : 267 | !!.!||||||!:!! !:!!!::|||||||||:!!|||!!:|||!:!|||...| rAspValPheLysArgCysValArgGlnHisGlnSerLeuMetAlaPheCysGluL 1712082 : CGACGTTTTCAAAAGATGCGTTCGTCAACATCAATCTCTGATGGCTTTCTgcgaga : 1712138 268 : ysLeuGluSerValPheAsnLeuProValLeuValGlnValLeuAlaPheSerLeu : 285 ||||||||...:::|||!:!:!! !:!!|||! !|||:!!|||!.!||||||:!! ysLeuGluGluMetPheSerMetIleIleLeuGlyGlnLeuLeuValPheSerIle 1712139 : aactcgaagaaatgTTCAGTATGATTATACTGGGGCAATTGTTAGTGTTCAGTATT : 1712192 286 : ValMetCysLeuAspGlyTyrGlnIleLeuMet >>>> Target Intron 4 : 297 !!||||||||||||! !! !|||:!!|||:!! 142 bp PheMetCysLeuAspValCysGlnValLeuLeu++ 1712193 : TTTATGTGTCTCGACGTGTGCCAAGTACTTCTGgt..................... : 1712230 298 : >>>> ProGlyAlaProThrArgThrArgPheIlePheSerPheGlnLeuIleAl : 313 ||||||||| !!..! !!! !!:!...||||||:::|||...||| !. ++ProGlyAlaSerValGlyLysGlnMetIlePheThrPheHisLeuAlaGl 1712231 : ....agCCAGGTGCATCTGTGGGTAAACAGAtgattttcacgtttcacctAGCGGG : 1712418 314 : aCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleMetGlnGluS : 332 !|||:!!|||||||||||||||||||||||||||||||||||||||!!: !|||| yCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleThrGluS 1712419 : ATGTATGTGTCAATTGCTGATGTTTACGTACAGCTGCGATTGTATAATAACGGAAA : 1712475 333 : erThrSerValAlaLeuAlaValTyrLysGlyProTrpSerPheLeuProAlaThr : 350 || !!:!|||.!! !||||||||| ! ||||||||| !! !|||||| !!:! erLeuAsnValThrGluAlaValTyrAspGlyProTrpProArgLeuProMetSer 1712476 : GTTTGAACGTGACGGAAGCGGTGTACGATGGACCATGGCCACGTTTGCCAATGAGC : 1712529 351 : GluSerGlyMetMetMetArgLysAspLeuIleLeuValThrIleArgSerGlyVa : 369 !!!!|||! |||!!:|||||||||||||||||||||! !||||||||| !!|| ThrArgGlyArgMetIleArgLysAspLeuIleLeuValIleIleArgSerArgVa 1712530 : ACGAGAGGAAGAATGATAAGGAAGGATTTGATACTCGTTATCATAAGATCGAGAGT : 1712586 370 : lProCysCysIleThrGlyTyrGlyPhePheValValSerLeuGluThrTyrThrA : 388 ||||||||||:!:|||!.! ||||||||||||:!!||||||||||||||||||! lProCysCysLeuThrAlaArgGlyPhePheValIleSerLeuGluThrTyrThrL 1712587 : ACCTTGTTGCTTGACCGCCAGAGGATTCTTCGTAATATCTTTGGAAACGTATACGA : 1712643 389 : rg >>>> Target Intron 5 >>>> ValLeuSerThrAlaValSerTyrP : 397 :! 634 bp |||:!!||||||||||||||||||| ys++ ++ValIleSerThrAlaValSerTyrP 1712644 : AGgt.........................agGTTATAAGTACAGCAGTGTCGTACT : 1713304 398 : heThrLeuLeuArgGlnThrThrGlnGluThr : 407 ||||||||||||||||| !! !:!!|||!:! heThrLeuLeuArgGlnArgIleGluGluSer 1713305 : TCACACTGTTAAGGCAACGTATAGAGGAAAGC : 1713336 vulgar: gi|350397295|ref|XP_003484831.1| 0 407 . KQ414915.1 1710200 1713336 + 1111 M 65 195 5 0 2 I 0 464 3 0 2 M 84 252 S 0 1 5 0 2 I 0 115 3 0 2 S 1 2 M 34 102 5 0 2 I 0 542 3 0 2 M 59 177 G 0 6 M 53 159 5 0 2 I 0 138 3 0 2 M 92 276 5 0 2 I 0 630 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1710201 1713336 1111 + . gene_id 1 ; sequence gi|350397295|ref|XP_003484831.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1710201 1710395 . + . KQ414915.1 exonerate:protein2genome:local exon 1710201 1710395 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1710396 1710397 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1710396 1710863 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1710862 1710863 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1710864 1711116 . + . KQ414915.1 exonerate:protein2genome:local exon 1710864 1711116 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711117 1711118 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711117 1711235 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1711234 1711235 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711236 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711236 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712227 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712228 1712229 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712228 1712369 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1712368 1712369 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1712370 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712370 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 5 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 5 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 4 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713336 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713336 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1710201 1713336 1111 + . alignment_id 1 ; Query gi|350397295|ref|XP_003484831.1| ; Align 1710201 1 195 ; Align 1710864 66 252 ; Align 1711238 151 102 ; Align 1711886 185 177 ; Align 1712069 244 159 ; Align 1712370 297 276 ; Align 1713280 389 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397295|ref|XP_003484831.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 828 Query range: 63 -> 410 Target range: 1706474 -> 1709261 64 : LeuSerThrArgIleTyrAsnValCysAsnIleLeuAlaValLeuMetProLeuLe : 82 |||..!.!! !:!!||| :!!||||||||||||.!!||| !!!: !|||!! LeuGlnAlaValValTyrValMetCysAsnIleLeuThrValGlyIleSerLeuPh 1706475 : TTGCAGGCCGTTGTTTACGTAATGTGCAACATTCTAACAGTGGGCATAAGTTTGTT : 1706529 83 : uLysMetThrValLeuLeuAlaHisLysGlnGluPhePheHisLeuIleValTyrT : 101 !|||!!: !|||! !:!! ! |||::::::|||......|||||| |||. eLysIleLeuValSerMetArgSerLysGluLysPheLeuGluLeuIleLysTyrA 1706530 : CAAGATCTTGGTCTCGATGAGGagtaaggaaaaatttttggaattaattaaatacg : 1706586 102 : hrGlnArgArgPheTrpHisGluAsnTyrAspGluAspGluLysLysIleTyrMet : 119 .!::!! !!.!|||||||||..!:!!||||||..!.!.|||:!!! !||| ! laArgThrAsnPheTrpHisSerAspTyrAspSerGlnGluGlnMetIleValAsn 1706587 : cCAGAACGAATTTCTGGCACTCGGATTATGACTCGCAGGAGCAAATGATTGTGAAC : 1706640 120 : AspCysLysArgLysCysThrValPheValCysPheValIlePheThrThrLysAl : 138 !!:|||||||||...|||||| !!.!!:!!||| ! !!! !||| !.!!!!.!. GluCysLysArgSerCysThrPheLeuIleCysValPheAsnPhePheAlaAsnGl 1706641 : GAGTGTAAACGTTCTTGTACATTCCTCATATGCGTGTTTAATTTCTTCGCTAATGG : 1706697 139 : aThrLeuIleCysTyrAlaLeuSerProIleLeu{G} >>>> Target Intro : 150 !|||:!! ! ! ||| !:!!!!!||||||:!!{|} 266 bp yThrValSerGlyTyrIleIleArgProIleVal{G}++ 1706698 : GACAGTGTCTGGATACATAATCAGGCCAATTGTA{G}gt................. : 1706736 151 : n 1 >>>> {lu}AsnIleGlyArgAsnGluSerAspArgGluLeuProPheAsn : 164 {||}!::||||||:::||||||||||||||| !||| ! !!||| ++{lu}SerIleGlyLysAsnGluSerAspArgIleLeuIleValAsn 1706737 : ........ag{AA}AgtattggaaaaaatgaatcagACAGGATACTTATAGTCAAC : 1707041 165 : MetTrpIleAspLeuProLeuThrAlaThrProTyrTyrGluIleThrLeuLeuLe : 183 .!.|||||||||!!!||| !||| !|||||||||||||||||| !!!! !! PheTrpIleAspPheProThrThrMetThrProTyrTyrGluIleLeuPheThrSe 1707042 : TTCTGGATTGACTTTCCGACAACCATGACACCATACTATGAGATATTATTTACGTC : 1707098 184 : uGln >>>> Target Intron 2 >>>> LeuMetAlaLeuTyrTyrValGl : 192 !||| 276 bp :!!.!. !:!! |||||| ! rGln++ ++ValPheIleValMetTyrValCy 1707099 : GCAGgt.........................agGTTTTTATCGTAATGTACGTTTG : 1707401 193 : yValGlyTyrPheCysPheAspAsnLeuLeuCysValMetSerLeuHisLeuAlaT : 211 !:!!.!!|||.!!|||.!!||||||!!!||||||:!!!!:!:!|||||| !|||| sIleSerTyrLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaT 1707402 : CATAAGCTACCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTA : 1707458 212 : hrGlnPheGlnIleLeuGlnTyrLysMetSerArgMetThrAspLeuThrAsnLys : 229 ||||||||!:!||||||||||||!:!:!!|||!.!:!! !! ! .!!|||:!! hrGlnPheArgIleLeuGlnTyrArgLeuSerAsnValCysGly---AlaAsnGlu 1707459 : CTCAATTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGT---GCAAACGAA : 1707509 230 : GluLysGlyGluThrAsnProGlnLeuPheSerGlySerSerAlaAsnLysCysTy : 248 ...!.. ::: ::: ::: ::: !|||!:!:!!:!!:!!||||| ArgSerAspLysIleSerLysLys------ThrProSerAsnSerAspGluCysTy 1707510 : CGTAgcgataaaatttcgaaaaaa------acaCCGTCCAATTCGGACGAATGCTA : 1707560 249 : rThrAlaPheLysLysTyrIleGlnGlnHisGlnAlaLeuIleAlaTyrCysArgL : 267 |.!! !||||||!!.! !||||||||||||||||||||||||! !||||||!.!: rAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnG 1707561 : CGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACG : 1707617 268 : ysLeuGluSerValPheAsnLeuProValLeuValGlnValLeuAlaPheSerLeu : 285 !!|||:!!..!||||||..!||| !||||||!.!||||||||| !||||||||| luLeuGlnGluValPheGlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeu 1707618 : AACTTCAAGAGGTGTTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTG : 1707671 286 : ValMetCysLeuAspGlyTyrGlnIleLeuMet >>>> Target Intron 3 : 297 :!!|||||||||||||||||| :!::!!||| 457 bp LeuMetCysLeuAspGlyTyr---LeuValMet++ 1707672 : TTAATGTGCCTCGATGGATAT---TTGGTGATGgt..................... : 1707706 298 : >>>> ProGlyAlaProThrArgThrArgPheIlePheSerPheGlnLeuIleAl : 313 !! !.!!|||! !! ! !|||.!!! !|||! !|||!!.|||! !. ++GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGl 1707707 : ....agGAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGG : 1708209 314 : aCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleMetGlnGluS : 332 !||||||||||||||||||||||||||||||||||||||||||:!:!!:!:!|||| yCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluS 1708210 : ATGCCTGTGCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAA : 1708266 333 : erThrSerValAlaLeuAlaValTyrLysGlyProTrpSerPheLeuProAlaThr : 350 || !!:!|||||| !|||:!!||| ! !! !!|||! ! !|||||| ! ! erLeuAsnValAlaAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAsp 1708267 : GCTTGAACGTGGCCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGAC : 1708320 351 : GluSerGlyMetMetMetArgLysAspLeuIleLeuValThrIleArgSerGlyVa : 369 ..!|||||| |||:!!||||||||||||! !!!!|||! ! !|||||| !!|| ArgSerGlyArgMetLeuArgLysAspLeuThrPheValIleGlyArgSerArgVa 1708321 : AGATCTGGGCGAATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGT : 1708377 370 : lProCysCysIleThrGlyTyrGlyPhePheValValSerLeuGluThrTyrThrA : 388 ||||||||||:!!|||!.!! !||||||||| !||||||||||||||||||||| lProCysCysLeuThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrS 1708378 : ACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTT : 1708434 389 : rg >>>> Target Intron 4 >>>> ValLeuSerThrAlaValSerTyrP : 397 ! 759 bp :!!||||||||||||!.!||||||| er++ ++IleLeuSerThrAlaAlaSerTyrP 1708435 : CGgt.........................agATTTTAAGTACCGCAGCGTCATACT : 1709220 398 : heThrLeuLeuArgGlnThrThrGlnGluThrLeuAsnSer : 410 ||||||||||||||:!! ! ! !|||! !:!!.!.!!! heThrLeuLeuArgLysGlnGluAlaGluIleValGluThr 1709221 : TCACACTGCTACGAAAACAAGAAGCAGAAATAGTTGAAACA : 1709261 vulgar: gi|350397295|ref|XP_003484831.1| 63 410 . KQ414915.1 1706474 1709261 + 828 M 86 258 S 0 1 5 0 2 I 0 262 3 0 2 S 1 2 M 34 102 5 0 2 I 0 272 3 0 2 M 41 123 G 1 0 M 11 33 G 2 0 M 53 159 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1706475 1709261 828 + . gene_id 2 ; sequence gi|350397295|ref|XP_003484831.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1706475 1706733 . + . KQ414915.1 exonerate:protein2genome:local exon 1706475 1706733 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1706734 1706735 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1706734 1706999 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1706998 1706999 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707000 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707000 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 4 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709261 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709261 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1706475 1709261 828 + . alignment_id 2 ; Query gi|350397295|ref|XP_003484831.1| ; Align 1706475 64 258 ; Align 1707002 151 102 ; Align 1707380 185 123 ; Align 1707503 227 33 ; Align 1707536 240 159 ; Align 1707695 294 9 ; Align 1708161 297 276 ; Align 1709196 389 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397295|ref|XP_003484831.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 524 Query range: 180 -> 403 Target range: 1702004 -> 1703653 181 : LeuLeuLeuGlnLeuMetAlaLeuTyrTyrValGlyValGlyTyrPheCysPheAs : 199 :!!!!! !|||:!!:!!:!!||||||:!!||||||||| !!|||.!!|||||||| ValPheAlaGlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAs 1702005 : GTGTTTGCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGA : 1702059 200 : pAsnLeuLeuCysValMetSerLeuHisLeuAlaThrGlnPheGlnIleLeuGlnT : 218 |||||||||||||:!!|||!:!|||||| !||||||||||||!::|||||||||| pAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnT 1702060 : CAACCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAAT : 1702116 219 : yrLysMetSerArgMetThrAspLeuThrAsnLysGluLysGlyGluThrAsnPro : 236 ||!:!:!:|||!.!:!! !||| !!.!!..|||:!! !! !!!:!.!.!. !! yrArgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSer 1702117 : ACAGGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCC : 1702170 237 : GlnLeuPheSerGlySerSerAlaAsnLysCysTyrThrAlaPheLysLysTyrIl : 255 ... ! ! !..! !!! !|||.!.!!.||||||! !|||||||||!!.! !:! SerAlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysVa 1702171 : AGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGT : 1702227 256 : eGlnGlnHisGlnAlaLeuIleAlaTyrCysArgLysLeuGluSerValPheAsnL : 274 !!:!||||||||| !! !|||.!!||||||!.!!:!|||.!...!:!!|||!..: lArgGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrV 1702228 : ACGACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGG : 1702284 275 : euProValLeuValGlnValLeuAlaPheSerLeuValMetCysLeuAspGlyTyr : 292 !! !||||||! !!!.:!!|||!.!|||||||||:!!!!:||||||! !|||!:! alIleValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPhe 1702285 : TCATTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTC : 1702338 293 : GlnIleLeuMetProGlyAlaProThr{A} >>>> Target Intron 1 >>> : 302 |||:!:|||:!! ! !! ! ! !{!} 607 bp GlnValLeuValValArgPheValGlu{P}-+ 1702339 : CAAGTGCTCGTGGTACGTTTCGTTGAA{C}ct........................ : 1702371 303 : > {rg}ThrArgPheIlePheSerPheGlnLeuIleAlaCysLeuCysGlnLeuL : 319 { !}! !|||.!!! !||| !|||!!.:!!:!!!.! !!||||||||||||| ++{ro}ArgArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuL 1702372 : .ag{CG}AGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTAT : 1703026 320 : euMetPheThrTyrSerCysAspCysIleMetGlnGluSerThrSerValAlaLeu : 337 ||:!:|||||||||||||||||| !!:!:!!::!!|||||||||!:!:!!!.! ! euLeuPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThr 1703027 : TGCTATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACT : 1703080 338 : AlaValTyrLysGlyProTrpSerPheLeuProAlaThrGluSerGlyMetMetMe : 356 |||:!!||| |||||||||! ! !|||||| ! !:!!:!!|||! ! !:! AlaIleTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLe 1703081 : GCGATATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTT : 1703137 357 : tArgLysAspLeuIleLeuValThrIleArgSerGlyValProCysCysIleThrG : 375 !|||!:!||||||! !:!!|||! !:!!|||||| !! ! !! !!|||:!!|||! uArgArgAspLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrA 1703138 : GAGAAGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTG : 1703194 376 : lyTyrGlyPhePheValValSerLeuGluThrTyrThrArg >>>> Target I : 389 .! !||||||||| !|||||||||||||||! !|||! ! 373 laSerGlyPhePheProValSerLeuGluThrCysThrThr++ 1703195 : CCAGCGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGgt............. : 1703238 390 : ntron 2 >>>> ValLeuSerThrAlaValSerTyrPheThrLeuLeuArgGln : 402 bp |||||||||||||||:!!|||||||||||||||||||||!!. ++ValLeuSerThrAlaMetSerTyrPheThrLeuLeuArgHis 1703239 : ............agGTGCTCAGTACAGCGATGTCATACTTCACTTTATTAAGGCAC : 1703648 403 : Thr : 403 :!! Ser 1703649 : TCT : 1703653 vulgar: gi|350397295|ref|XP_003484831.1| 180 403 . KQ414915.1 1702004 1703653 + 524 M 121 363 S 0 1 5 0 2 I 0 603 3 0 2 S 1 2 M 86 258 5 0 2 I 0 369 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702005 1703653 524 + . gene_id 3 ; sequence gi|350397295|ref|XP_003484831.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702005 1702368 . + . KQ414915.1 exonerate:protein2genome:local exon 1702005 1702368 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1702369 1702370 . + . intron_id 1 ; splice_site "CT" KQ414915.1 exonerate:protein2genome:local intron 1702369 1702975 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702974 1702975 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1702976 1703235 . + . KQ414915.1 exonerate:protein2genome:local exon 1702976 1703235 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1703236 1703237 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1703236 1703608 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1703607 1703608 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1703609 1703653 . + . KQ414915.1 exonerate:protein2genome:local exon 1703609 1703653 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702005 1703653 524 + . alignment_id 3 ; Query gi|350397295|ref|XP_003484831.1| ; Align 1702005 181 363 ; Align 1702978 303 258 ; Align 1703609 389 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397295|ref|XP_003484831.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 511 Query range: 180 -> 404 Target range: 1694854 -> 1696260 181 : LeuLeuLeuGlnLeuMetAlaLeuTyrTyrValGlyValGlyTyrPheCysPheAs : 199 |||!!!|||||| !:!:..!:!!|||:!!||||||:!! !!|||.!.|||||||| LeuPheLeuGlnThrLeuCysValTyrHisValGlyIleCysTyrMetCysPheAs 1694855 : CTATTTCTGCAGACACTTTGCGTGTACCATGTCGGTATATGTTACATGTGCTTCGA : 1694909 200 : pAsnLeuLeuCysValMetSerLeuHisLeuAlaThrGlnPheGlnIleLeuGlnT : 218 ||||:!!||| !!:!!:!!!:!||||||:!!||||||||||||!::|||||||||| pAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGlnPheArgIleLeuGlnT 1694910 : CAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAATTTCGTATCCTTCAAT : 1694966 219 : yrLysMetSerArgMetThrAspLeuThrAsnLysGluLysGlyGluThrAsnPro : 236 ||::!.!.! !!.!:!!!:!:!!:!!! !.!.|||:!!! !! !! ... yrArgPheMetAsnLeuSerAsnValIleGluLysGlnThrAspGlyArgGluLeu 1694967 : ACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAACAGACGGTcgagaattg : 1695020 237 : GlnLeuPheSerGlySerSerAlaAsnLysCysTyrThrAlaPheLysLysTyrIl : 255 :::::: ! ! !!:!! !.!! ! ! !!||| ! !!!.|||!..! !:! GluIleGlyTyrThrAsnPheThrValAspSerTyrLeuGlnLeuLysSerCysVa 1695021 : gaaattggtTACACAAATTTCACAGTCGATAGTTACTTACAATTGAAGAGTTGCGT : 1695077 256 : eGlnGlnHisGlnAlaLeuIleAlaTyrCysArgLysLeuGluSerValPheAsnL : 274 :||| ! ||||||||||||! !!.!||||||!:!|||||||||!:!:!!|||:::| lGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeuGluAsnIlePheSerL 1695078 : GCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTGGAGAACATATTTTCGT : 1695134 275 : euProValLeuValGlnValLeuAlaPheSerLeuValMetCysLeuAspGlyTyr : 292 ||! !||||||! !||||||||| !.!.:!!:!!|||:!:||||||! |||||| euLeuValLeuGlyGlnValLeuPheLeuAlaMetValLeuCysLeuValGlyTyr 1695135 : TGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTACTTTGCCTCGTGGGATAT : 1695188 293 : GlnIleLeuMet >>>> Target Intron 1 >>>> ProGlyAlaProThr : 301 |||:!!!!!:!! 415 bp !!! !:!!||| !! GlnLeuPheLeu++ ++ThrAspSerProPro 1695189 : CAGCTATTTCTGgt.........................agACAGACTCACCACCT : 1695630 302 : ArgThrArgPheIlePheSerPheGlnLeuIleAlaCysLeuCysGlnLeuLeuMe : 320 !! !!.! !! !!!. !.!!.!.||| !!.! !||||||||||||!!!|| SerArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrLeuCysGlnLeuPheMe 1695631 : TCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTTTGTGTCAACTTTTTAT : 1695687 321 : tPheThrTyrSerCysAspCysIleMetGlnGluSerThrSerValAlaLeuAlaV : 339 ||||||||||||||||||| !!:!:! ::!||||||! !..!|||::! !|||| tPheThrTyrSerCysAspGlyLeuThrArgGluSerMetAspValSerArgAlaV 1695688 : GTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATGGACGTTAGCAGAGCTG : 1695744 340 : alTyrLysGlyProTrpSerPheLeuProAlaThrGluSerGlyMetMetMetArg : 357 ||!:! ! !!||||||:!! !|||||| ! !..!!:!|||! ! :!!||| alPheAlaArgProTrpAlaAsnLeuProMetAspArgAsnGlyLysSerValArg 1695745 : TATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAATGGGAAAAGTGTGCGA : 1695798 358 : LysAspLeuIleLeuValThrIleArgSerGlyValProCysCysIleThrGlyTy : 376 :!!..!:!!:!!:!!|||! !!!:||||||..! ! !||||||:!!|||!.! GlnSerMetLeuMetValIleMetArgSerAsnArgCysCysCysLeuThrAlaSe 1695799 : CAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTTGCTGCTTAACAGCCAG : 1695855 377 : rGlyPhePheValValSerLeuGluThrTyrThrArg >>>> Target Intro : 389 !||||||||| !||||||||||||||||||||| !! 319 bp rGlyPhePheProValSerLeuGluThrTyrThrGly++ 1695856 : CGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGgt................. : 1695896 390 : n 2 >>>> ValLeuSerThrAlaValSerTyrPheThrLeuLeuArgGlnThrT : 404 |||||||||||||||:!!||||||||||||||||||||||||:!!| ++ValLeuSerThrAlaMetSerTyrPheThrLeuLeuArgGlnSerT 1695897 : ........agGTCCTCAGCACTGCAATGTCATACTTTACACTACTGAGACAATCGA : 1696258 405 : hr : 404 || hr 1696259 : CT : 1696260 vulgar: gi|350397295|ref|XP_003484831.1| 180 404 . KQ414915.1 1694854 1696260 + 511 M 116 348 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694855 1696260 511 + . gene_id 4 ; sequence gi|350397295|ref|XP_003484831.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694855 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694855 1695202 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 1 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696260 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696260 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694855 1696260 511 + . alignment_id 4 ; Query gi|350397295|ref|XP_003484831.1| ; Align 1694855 181 348 ; Align 1695618 297 276 ; Align 1696213 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397295|ref|XP_003484831.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 426 Query range: 147 -> 296 Target range: 1699025 -> 1699971 148 : IleLeuGluAsnIleGlyArgAsnGluSerAspArgGluLeuProPheAsnMetTr : 166 |||||| |||||||||||||||...|||||||||! !||||||||||||||||| IleLeuAlaAsnIleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTr 1699026 : ATTTTAgcaaatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTG : 1699080 167 : pIleAspLeuProLeuThrAlaThrProTyrTyrGluIleThrLeuLeuLeuGln : 185 |:!!||||||||||||:!!!.!:!!||| |||||||||..!!!!:!!|||||| pValAspLeuProLeuSerValSerProThrTyrGluIleValPheValLeuGln+ 1699081 : GGTTGATTTGCCGCTGTCTGTGTCACCAACGTACGAAATAGTGTTCGTGCTTCAGg : 1699137 186 : >>>> Target Intron 1 >>>> LeuMetAlaLeuTyrTyrValGlyValG : 194 499 bp :!!:!!:!!||||||:!!||||||||| + ++ValLeuSerLeuTyrHisValGlyValC 1699138 : t.........................agGTTCTGTCTTTGTACCACGTTGGTGTAT : 1699663 195 : lyTyrPheCysPheAspAsnLeuLeuCysValMetSerLeuHisLeuAlaThrGln : 212 !!|||.!!|||||||||||||||||||||:!!|||!:!|||||| !||||||||| ysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGln 1699664 : GTTACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAA : 1699717 213 : PheGlnIleLeuGlnTyrLysMetSerArgMetThrAspLeuThrAsnLysGluLy : 231 |||!::||||||||||||!:!:!:|||!.!:!! !||| !!.!!..|||:!! PheArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysGlnVa 1699718 : TTTCGTATACTGCAATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGT : 1699774 232 : sGlyGluThrAsnProGlnLeuPheSerGlySerSerAlaAsnLysCysTyrThrA : 250 !! !!!:!.!.!. !!... ! ! !..! !!! !|||.!.!!.||||||! !| lAspAspAsnGluSerSerAlaAlaLeuSerArgPheAlaGluAsnCysTyrLysA 1699775 : AGATGACAATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGG : 1699831 251 : laPheLysLysTyrIleGlnGlnHisGlnAlaLeuIleAlaTyrCysArgLysLeu : 268 ||||||||!!.! !:!!!:!||||||||| !! !|||.!!||||||!.!!:!||| laPheLysAsnCysValArgGlnHisGlnAsnHisIleThrTyrCysHisArgLeu 1699832 : CGTTTAAAAATTGCGTACGACAACATCAGAATCATATCACGTACTGTCACAGATTG : 1699885 269 : GluSerValPheAsnLeuProValLeuValGlnValLeuAlaPheSerLeuValMe : 287 .!...!:!!|||!..:!! !||||||! !!!.:!!|||!.!|||||||||:!!!! AsnGluIlePheThrValIleValLeuGlyHisIleLeuValPheSerLeuLeuIl 1699886 : AACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGCCTTCTGAT : 1699942 288 : tCysLeuAspGlyTyrGlnIleLeuMet : 296 :||||||! !|||!:!|||:!:|||:!: eCysLeuValGlyPheGlnValLeuVal 1699943 : ATGTCTGGTTGGATTCCAAGTGCTCGTA : 1699971 vulgar: gi|350397295|ref|XP_003484831.1| 147 296 . KQ414915.1 1699025 1699971 + 426 M 37 111 5 0 2 I 0 495 3 0 2 M 112 336 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699026 1699971 426 + . gene_id 5 ; sequence gi|350397295|ref|XP_003484831.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1699026 1699136 . + . KQ414915.1 exonerate:protein2genome:local exon 1699026 1699136 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699137 1699138 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699137 1699635 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699634 1699635 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699636 1699971 . + . KQ414915.1 exonerate:protein2genome:local exon 1699636 1699971 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699026 1699971 426 + . alignment_id 5 ; Query gi|350397295|ref|XP_003484831.1| ; Align 1699026 148 111 ; Align 1699636 185 336 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397295|ref|XP_003484831.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 407 Query range: 0 -> 185 Target range: 1685751 -> 1688161 1 : MetSerPheLeuLysSerHisAspIleSerIleSerLeuThrSerThrPheMetLy : 19 |||..! !|||! !...|||||||||:!!!.. ...:::|| MetGlnAlaThrLysTyrArgAspIleSerLeuLysCysGlyIlePheLeuLeuLy 1685752 : ATGCAGGCGACAAAATACAGGGATATTTCCCTCAAgtgtggaatttttcttttgaa : 1685806 20 : sLeuIleGlyIleTrpThrSerLysAsnGlnMetGluArgArgValArgLeuIleT : 38 ||||::!|||:!!|||! !|||! !|||...:!:|||..!||| !||| !.!!| sLeuValGlyLeuTrpMetSerMetAsnSerValGluGluArgArgArgArgPheT 1685807 : attagtCGGCCTCTGGATGTCCATGAACAGCGTCGAGGAGCGTCGAAGGAGGTTCA : 1685863 39 : hrLeuIleTyrAlaPheSerIleIleLeuPheAlaLeuTrpIleGluIleThrAsp : 56 |||||.!! :!! !!! ! !:!!! !!:!!.!:!!!:::!:.!.:!!!.!||| hrLeuPheGlySerValPheAlaLeuSerTyrGlyValTyrValAsnValAsnAsp 1685864 : CGTTGTTCGGATCAGTTTTCGCCCTTTCTTACGGCGTTTACGTGAACGTAAACGAT : 1685917 57 : ThrTyrTyrSerPheAspAspLeuSer >>>> Target Intron 1 >>>> : 66 ! ! !:!!|||||||||||||||||| 1431 bp IleLeuHisSerPheAspAspLeuSer++ ++ 1685918 : ATTCTTCACAGCTTCGATGATCTGAGCgt.........................ag : 1687376 67 : ThrArgIleTyrAsnValCysAsnIleLeuAlaValLeuMetProLeuLeuLysMe : 84 ! !!|||!:! ..!||||||! !|||..!:!!|||:!! !!:!!!!!|||!! HisCysIlePheLeuThrCysAsnThrLeuCysIleLeuLeuAlaIlePheLysIl 1687377 : cATTGCATCTTTCTGACTTGCAACACACTGTGCATTCTTCTGGCGATATTTAAGAT : 1687432 85 : tThrValLeuLeuAlaHisLysGlnGluPhePheHisLeuIleValTyrThrGlnA : 103 : !:!!||| ! !|||!:! !|||||| .!.:!!:!!:!!|||.!!|||! ePheIleLeuSerAsnHisArgThrGluPheLysGluIleValLeuTyrAlaGlnL 1687433 : TTTCATACTAAGCAATCACAGAACGGAATTCAAGGAGATAGTCTTGTACGCGCAGA : 1687489 104 : rgArgPheTrpHisGluAsnTyrAspGluAspGluLysLysIleTyrMetAspCys : 121 :!!.!|||||||||!!:||||||..!:!!!!:|||!:! !:!!||| |||||| ysHisPheTrpHisAspAsnTyrSerLysGluGluArgValLeuTyrGlyAspCys 1687490 : AGCATTTTTGGCATGATAATTACAGCAAAGAGGAGAGGGTGCTTTATGGAGATTGC : 1687543 122 : LysArgLysCysThrValPheValCysPheValIlePheThrThrLysAlaThrLe : 140 :!!||| |||! !:!!!::||| .!.:!! !||| !|||:!!|||:!!|| GlnArgPheCysLysLeuTrpValIleLeuIleCysPheLeuThrGlnAlaSerLe 1687544 : CAGAGGTTCTGCAAACTATGGGTCATACTAATATGTTTCCTTACGCAAGCCTCTTT : 1687600 141 : uIleCysTyrAlaLeuSerProIleLeu{G} >>>> Target Intron 2 >> : 150 |:!:! !||| !:!!!!!|||:!! !{!} 424 bp uValPheTyrPheValThrProLeuThr{A}++ 1687601 : AGTGTTCTACTTTGTCACACCACTCACT{G}gt....................... : 1687633 151 : >> {lu}AsnIleGlyArgAsnGluSerAspArgGluLeuProPheAsnMetTrp : 166 { !}|||!!:.!!||||||:!!|||||||||! !|||||||||!!.|||||| ++{la}AsnMetSerArgAsnLysSerAspArgValLeuProPheLysMetTrp 1687634 : ..ag{CA}AATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTGG : 1688102 167 : IleAspLeuProLeuThrAlaThrProTyrTyrGluIleThrLeuLeuLeuGlnLe : 185 :!!|||! !||||||:!!! !|||||||||||||||:!:! !!!! !!!!|||:! ValAspTrpProLeuSerAspThrProTyrTyrGluLeuMetPheThrPheGlnVa 1688103 : GTCGATTGGCCGCTATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAGGT : 1688159 186 : u : 185 ! l 1688160 : A : 1688161 vulgar: gi|350397295|ref|XP_003484831.1| 0 185 . KQ414915.1 1685751 1688161 + 407 M 65 195 5 0 2 I 0 1427 3 0 2 M 84 252 S 0 1 5 0 2 I 0 420 3 0 2 S 1 2 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1685752 1688161 407 + . gene_id 6 ; sequence gi|350397295|ref|XP_003484831.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1685752 1685946 . + . KQ414915.1 exonerate:protein2genome:local exon 1685752 1685946 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1685947 1685948 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1685947 1687377 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1687376 1687377 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1687378 1687630 . + . KQ414915.1 exonerate:protein2genome:local exon 1687378 1687630 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1687631 1687632 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1687631 1688054 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1688053 1688054 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1688055 1688161 . + . KQ414915.1 exonerate:protein2genome:local exon 1688055 1688161 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1685752 1688161 407 + . alignment_id 6 ; Query gi|350397295|ref|XP_003484831.1| ; Align 1685752 1 195 ; Align 1687378 66 252 ; Align 1688057 151 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397295|ref|XP_003484831.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 376 Query range: 243 -> 406 Target range: 1688493 -> 1690091 244 : AlaAsnLysCysTyrThrAlaPheLysLysTyrIleGlnGlnHisGlnAlaLeuIl : 262 .!!||||||||||||||| !.!.! ! ! ! !|||:!!.!.||||||:!!||||| ThrAsnLysCysTyrThrLysLeuIleAspCysIleLysAsnHisGlnSerLeuIl 1688494 : ACGAACAAATGTTACACCAAGCTGATAGATTGCATCAAAAATCATCAGTCGTTGAT : 1688548 263 : eAlaTyrCysArgLysLeuGluSerValPheAsnLeuProValLeuValGlnValL : 281 |! !!:!||| !|||||||||!:!|||!:!!..||| !!:!!|||! !!!.:!!: eGluPheCysValLysLeuGluAsnValTyrThrLeuThrIleLeuGlyHisIleV 1688549 : CGAGTTCTGCGTGAAACTCGAGAACGTGTACACGTTGACTATACTCGGCCACATAG : 1688605 282 : euAlaPheSerLeuValMetCysLeuAspGlyTyrGlnIleLeuMet >>>> Ta : 297 !!!.!|||||||||:!!||||||!!!||| !|||:!!:!!:!!:!! alValPheSerLeuLeuMetCysPheAspThrTyrGluValValLeu++ 1688606 : TGGTCTTCAGCTTGTTGATGTGCTTCGACACGTACGAGGTAGTTCTGgt....... : 1688655 298 : rget Intron 1 >>>> ProGlyAlaProThrArgThrArgPheIlePheSer : 308 816 bp !! !!.!||||||! !||||||.!!||||||! ! ++AlaLysValProThrThrThrArgLeuIlePheLeu 1688656 : ..................agGCAAAGGTACCTACCACGACGCGCCTCATATTCTTA : 1689502 309 : PheGlnLeuIleAlaCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCy : 327 |||!!.:!!|||!.! !!!!! !!..::::::...|||||||||||||||! ! ! PheHisMetIleGlySerPheIleHisIleIlePhePheThrTyrSerCysGlyGl 1689503 : TTCCACATGATCGGTAGCTTCATCCacataattttcttcacgtACAGTTGTGGTGG : 1689559 328 : sIleMetGlnGluSerThrSerValAlaLeuAlaValTyrLysGlyProTrpSerP : 346 !:!:!!::!!||||||! !..!:!!||| !|||..!||| !||| !|||!!! yLeuIleGluGluSerMetAspIleAlaThrAlaThrTyrAlaGlyMetTrpThrV 1689560 : TTTGATAGAAGAGAGTATGGATATTGCAACAGCAACGTATGCAGGAATGTGGACGG : 1689616 347 : heLeuProAlaThrGluSerGlyMetMetMetArgLysAspLeuIleLeuValThr : 364 !!|||||| !!.!:!! !|||! |||!!:||| !:!!:!!! |||:!!||| alLeuProMetAsnLysValGlyLysMetIleArgGlyAsnMetLysLeuMetThr 1689617 : TTTTGCCAATGAATAAAGTTGGCAAAATGATACGAGGAAATATGAAGTTAATGACC : 1689670 365 : IleArgSerGlyValProCysCysIleThrGlyTyrGlyPhePheValValSerLe : 383 :!!|||||| ! !|||||||||||||||!.! !||||||||| !|||||||| ValArgSerLeuGlnProCysCysIleThrAlaGlyGlyPhePheProValSerLe 1689671 : GTAAGGTCGTTGCAACCGTGTTGCATAACTGCTGGTGGATTCTTTCCTGTCTCCTT : 1689727 384 : uGluThrTyrThrArg >>>> Target Intron 2 >>>> ValLeuSerTh : 392 |:!!||| !||| ! 293 bp :!!:!!|||:! uLysThrAlaThrAla++ ++LeuMetSerSe 1689728 : GAAAACTGCTACCGCGgt.........................agCTAATGAGTTC : 1690047 393 : rAlaValSerTyrPheThrLeuLeuArgGlnThrThrGlnGlu : 406 !.!!:!!|||||||||||||||:!!|||:!!! !:!! ||| rThrMetSerTyrPheThrLeuMetArgGluArgSerAlaGlu 1690048 : CACAATGTCGTATTTCACGCTCATGAGAGAGAGATCGGCTGAA : 1690091 vulgar: gi|350397295|ref|XP_003484831.1| 243 406 . KQ414915.1 1688493 1690091 + 376 M 53 159 5 0 2 I 0 812 3 0 2 M 92 276 5 0 2 I 0 289 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688494 1690091 376 + . gene_id 7 ; sequence gi|350397295|ref|XP_003484831.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688494 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688494 1688652 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690091 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690091 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688494 1690091 376 + . alignment_id 7 ; Query gi|350397295|ref|XP_003484831.1| ; Align 1688494 244 159 ; Align 1689469 297 276 ; Align 1690038 389 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397295|ref|XP_003484831.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 290 Query range: 68 -> 231 Target range: 1681318 -> 1682094 69 : TyrAsnValCysAsnIleLeuAlaValLeuMetProLeuLeuLysMetThrValLe : 87 |||!.!!.!||||||! :!! !!:!!!!!:!: !|||:!!|||! ..!|||!! TyrThrAlaCysAsnThrIleProLeuPheValIleLeuMetLysThrValValPh 1681319 : TACACTGCTTGCAACACGATACCACTTTTCGTAATACTAATGAAGACTGTTGTATT : 1681373 88 : uLeuAlaHisLysGlnGluPhePheHisLeuIleValTyrThrGlnArgArgPheT : 106 ! ! !!..::!:!!|||.!..!. ||||||! !!:!.!!|||!:! !|||| eThrIleArgArgLysGluIleLeuTrpLeuIleGluPheAlaGlnLysTyrPheT 1681374 : CACGATTCGACGAAAAGAAATACTGTGGCTGATCGAATTTGCCCAAAAATACTTTT : 1681430 107 : rpHisGluAsnTyrAspGluAspGluLysLysIleTyrMetAspCysLysArgLys : 124 |||||!!:!!.:!!..!... !! !|||||| ! :!! ! ! !:!!:! rpHisAspLysHisSerSerPheGlyLysLysAlaMetAspAsnLeuAspLysArg 1681431 : GGCACGACAAGCACAGCAGCTTTGGAAAAAAGGCCATGGACAACCTTGACAAGAGA : 1681484 125 : CysThrValPheValCysPheValIlePheThrThrLysAlaThrLeuIleCysTy : 143 ..! !:!!!:!:!!! !! ! !!! !.!! !! ! ! ||||||:!!:!! || AlaLeuIleTyrMetSerSerPheThrIleLeuIleTyrAlaThrValValIleTy 1681485 : GCCCTAATATATATGTCCTCTTTCACTATCCTAATTTATGCAACAGTCGTTATATA : 1681541 144 : rAlaLeuSerProIleLeu{G} >>>> Target Intron 1 >>>> {lu}A : 151 |!.!|||||||||||||||{|} 161 bp {||}| rValLeuSerProIleLeu{G}++ ++{lu}A 1681542 : CGTGTTGTCTCCAATTCTT{G}gt.........................ag{aG}A : 1681726 152 : snIleGlyArgAsnGluSerAspArgGluLeuProPheAsnMetTrpIle<->Asp : 168 ||||||||!:!!:!!!:..!!!:||| ||||||||| .!. ! :!: :!! snIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAsn 1681727 : ACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAAC : 1681780 169 : LeuProLeuThrAlaThrProTyrTyrGluIleThrLeuLeuLeuGln >>>> T : 185 |||||| !:!! !|||||||||||||||||| ...:!!:!!:!! LeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681781 : TTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt...... : 1681833 186 : arget Intron 2 >>>> LeuMetAlaLeuTyrTyrValGlyValGlyTyrPh : 196 120 bp !:!::!!:!! :!! !|||:!! !!!:!! ++ThrLeuSerValValHisSerGlyIleCysPheCy 1681834 : ...................agACATTATCTGTGGTGCATTCGGGAATTTGTTTCTG : 1681984 197 : eCysPheAspAsnLeuLeuCysValMetSerLeuHisLeuAlaThrGlnPheGlnI : 215 !||||||||||||!!!||||||:!!:!!|||:!!|||:!!!.! !||||||:!!| sCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLysI 1681985 : TTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAGA : 1682041 216 : leLeuGlnTyrLysMetSerArg<->MetThrAspLeuThrAsnLysGluLys : 231 |||||||| !!|||:!:..!! ! :!!!:!!!: ::::::||||||||| leLeuGlnAsnLysLeuGlnThrValLeuSerGluLysSerSerLysGluLys 1682042 : TTTTACAAAACAAACTCCAAACAGTATTGAGTGAGAAatcttcgaaagaaaaa : 1682094 vulgar: gi|350397295|ref|XP_003484831.1| 68 231 . KQ414915.1 1681318 1682094 + 290 M 81 243 S 0 1 5 0 2 I 0 157 3 0 2 S 1 2 M 17 51 G 0 3 M 17 51 5 0 2 I 0 116 3 0 2 M 38 114 G 0 3 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681319 1682094 290 + . gene_id 8 ; sequence gi|350397295|ref|XP_003484831.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681319 1681562 . + . KQ414915.1 exonerate:protein2genome:local exon 1681319 1681562 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681563 1681564 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681563 1681723 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681722 1681723 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1681724 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681724 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682094 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682094 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681319 1682094 290 + . alignment_id 8 ; Query gi|350397295|ref|XP_003484831.1| ; Align 1681319 69 243 ; Align 1681726 151 51 ; Align 1681780 168 51 ; Align 1681951 185 114 ; Align 1682068 223 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397295|ref|XP_003484831.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 147 -> 185 Target range: 1694346 -> 1694460 148 : IleLeuGluAsnIleGlyArgAsnGluSerAspArgGluLeuProPheAsnMetTr : 166 .!!|||! !|||:!!|||!:!|||:!!|||!!:||| !||||||||||||||||| PheLeuAlaAsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTr 1694347 : TTTTTAGCAAATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTG : 1694401 167 : pIleAspLeuProLeuThrAlaThrProTyrTyrGluIleThrLeuLeuLeuGlnL : 185 |:!!|||!!!||| ! ! !:!!||||||||||||:!! !!!!:!!:!!|||: pValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGlnV 1694402 : GGTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGG : 1694458 186 : eu : 185 !! al 1694459 : TA : 1694460 vulgar: gi|350397295|ref|XP_003484831.1| 147 185 . KQ414915.1 1694346 1694460 + 127 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694347 1694460 127 + . gene_id 9 ; sequence gi|350397295|ref|XP_003484831.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1694347 1694460 . + . KQ414915.1 exonerate:protein2genome:local exon 1694347 1694460 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694347 1694460 127 + . alignment_id 9 ; Query gi|350397295|ref|XP_003484831.1| ; Align 1694347 148 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397298|ref|XP_003484832.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 707 Query range: 5 -> 222 Target range: 1688325 -> 1690085 6 : LeuHisThrGlnLeuLeuAlaValGlnGlnIleGlyAlaSerTyrIleCysProAs : 24 ||| !|||||| !|||..!||| ! ||||||||||||:!!||||||||| !!|| LeuPheThrGlnAlaLeuCysValTyrGlnIleGlyAlaAlaTyrIleCysSerAs 1688326 : CTATTTACACAGGCGCTGTGCGTGTATCAAATCGGCGCCGCCTATATCTGCTCCGA : 1688380 25 : pAsnPheLeuCysValLeuAsnLeuHisValValTyrGlnPheArgMetLeuGlnA : 43 |!..|||!!!|||:!!||||||:!!||||||:!!! !|||||||||!!:|||.!. pThrPhePheCysMetLeuAsnMetHisValIleCysGlnPheArgIleLeuAsnT 1688381 : CACGTTTTTCTGCATGCTGAACATGCACGTGATCTGCCAGTTCCGTATACTAAATT : 1688437 44 : snThrLeuValAsnLeuTrpSerAsnIleAspGluArgThrAspIleValGluTyr : 61 !!! !|||:!!|||:!!||| !! !|||||||||||||||:!!!!:..!|||||| yrArgLeuLeuAsnMetTrpProValIleAspGluArgThrAsnMetThrGluTyr 1688438 : ACAGACTGTTGAACATGTGGCCGGTCATCGACGAGCGAACGAACATGACCGAATAC : 1688491 62 : SerAsnGluCysTyrValMetLeuGluLysCysIleProLysHisGlnSerLeuIl : 80 !!!|||:!!||||||..!! !||| ! ! |||||| !!!.|||||||||||||| ThrAsnLysCysTyrThrLysLeuIleAspCysIleLysAsnHisGlnSerLeuIl 1688492 : ACGAACAAATGTTACACCAAGCTGATAGATTGCATCAAAAATCATCAGTCGTTGAT : 1688548 81 : eGluPheSerAlaLysLeuAspAspIleTyrThrLeuProIleLeuSerHisMetV : 99 |||||||!!!!.!||||||!!::!!:!:||||||||| !!||||||.!!|||!!:| eGluPheCysValLysLeuGluAsnValTyrThrLeuThrIleLeuGlyHisIleV 1688549 : CGAGTTCTGCGTGAAACTCGAGAACGTGTACACGTTGACTATACTCGGCCACATAG : 1688605 100 : alIlePheSerValLeuMetTyrPheAspThrTyrGluValIleLeu >>>> Ta : 115 ||:!!||||||:!!||||||! !||||||||||||||||||:!!||| alValPheSerLeuLeuMetCysPheAspThrTyrGluValValLeu++ 1688606 : TGGTCTTCAGCTTGTTGATGTGCTTCGACACGTACGAGGTAGTTCTGgt....... : 1688655 116 : rget Intron 1 >>>> AlaAspValSerProGlyThrArgLeuIlePhePhe : 126 816 bp ||| ! ||| !! !! !|||||||||||||||!!. ++AlaLysValProThrThrThrArgLeuIlePheLeu 1688656 : ..................agGCAAAGGTACCTACCACGACGCGCCTCATATTCTTA : 1689502 127 : PheHisMetIleGlySerPheThrHisIleIlePhePheThrTyrIleCysAsnGl : 145 |||||||||||||||||||||! !|||||||||||||||||||||! !|||..!|| PheHisMetIleGlySerPheIleHisIleIlePhePheThrTyrSerCysGlyGl 1689503 : TTCCACATGATCGGTAGCTTCATCCacataattttcttcacgtACAGTTGTGGTGG : 1689559 146 : yLeuValGluGluSerThrAsnIleSerThrAlaSerTyrSerGlyTrpTrpMetI : 164 ||||:!!|||||||||! !:!!|||:!!||||||!!!|||:!!||| !|||! !: yLeuIleGluGluSerMetAspIleAlaThrAlaThrTyrAlaGlyMetTrpThrV 1689560 : TTTGATAGAAGAGAGTATGGATATTGCAACAGCAACGTATGCAGGAATGTGGACGG : 1689616 165 : leLeuProMetThrGluThrGlyArgLysIleArgLysAspThrArgIleMetIle : 182 !!|||||||||!.!:!!..!|||!:!! !|||||| !:!!! !!:!:!!|||! ! alLeuProMetAsnLysValGlyLysMetIleArgGlyAsnMetLysLeuMetThr 1689617 : TTTTGCCAATGAATAAAGTTGGCAAAATGATACGAGGAAATATGAAGTTAATGACC : 1689670 183 : MetLysSerMetArgProCysTyrLeuSerAlaGlyGlyPhePheProValThrLe : 201 :!:!:!|||:!!!:!||||||! !:!!!!!|||||||||||||||||||||:!!|| ValArgSerLeuGlnProCysCysIleThrAlaGlyGlyPhePheProValSerLe 1689671 : GTAAGGTCGTTGCAACCGTGTTGCATAACTGCTGGTGGATTCTTTCCTGTCTCCTT : 1689727 202 : uGluThrSerThrAla >>>> Target Intron 2 >>>> LeuIleSerSe : 210 |:!!|||:!!|||||| 293 bp |||!!:||||| uLysThrAlaThrAla++ ++LeuMetSerSe 1689728 : GAAAACTGCTACCGCGgt.........................agCTAATGAGTTC : 1690047 211 : rThrMetSerTyrPheThrLeuMetArgGluSerSer : 222 |||||||||||||||||||||||||||||||!!!||| rThrMetSerTyrPheThrLeuMetArgGluArgSer 1690048 : CACAATGTCGTATTTCACGCTCATGAGAGAGAGATCG : 1690085 vulgar: gi|350397298|ref|XP_003484832.1| 5 222 . KQ414915.1 1688325 1690085 + 707 M 109 327 5 0 2 I 0 812 3 0 2 M 92 276 5 0 2 I 0 289 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688326 1690085 707 + . gene_id 1 ; sequence gi|350397298|ref|XP_003484832.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688326 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688326 1688652 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690085 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690085 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688326 1690085 707 + . alignment_id 1 ; Query gi|350397298|ref|XP_003484832.1| ; Align 1688326 6 327 ; Align 1689469 115 276 ; Align 1690038 207 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397298|ref|XP_003484832.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 397 Query range: 3 -> 220 Target range: 1707361 -> 1709237 4 : CysTyrLeuHisThrGlnLeuLeuAlaValGlnGlnIleGlyAlaSerTyrIleCy : 22 ||| ||| !|||:!!!!! !|||..! ! :!! !! !||||||:!!|| CysLeuLeuSerLeuGlnValPheIleValMetTyrValCysIleSerTyrLeuCy 1707362 : TGTCTGTTATCGCTACAGGTTTTTATCGTAATGTACGTTTGCATAAGCTACCTTTG : 1707416 23 : sProAspAsnPheLeuCysValLeuAsnLeuHisValValTyrGlnPheArgMetL : 41 | !|||||||||||||||:!!:!!|||||||||..!!.! !|||||||||!!:| sIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleL 1707417 : TATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATAT : 1707473 42 : euGlnAsnThrLeuValAsnLeuTrpSerAsnIleAspGluArgThrAspIleVal : 59 ||||| !!! !||| !|||:!!!! .!! ! !!!:...! ||| euGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAspLysIleSer 1707474 : TGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttcg : 1707527 60 : Glu<-><-><-><->TyrSerAsnGluCysTyrValMetLeuGluLysCysIlePr : 74 ::: !!|||:!!|||||||||!.!! !!!!:!!!!.||||||! LysLysThrProSerAsnSerAspGluCysTyrAlaLysPheLysAsnCysIleGl 1707528 : aaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCA : 1707584 75 : oLysHisGlnSerLeuIleGluPheSerAlaLysLeuAspAspIleTyrThrLeuP : 93 !:!!||||||:!!|||||||||!:!!!! !:!!|||.!.!!::!:!:! !||| nGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluValPheGlyLeuP 1707585 : ACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGGTGTTCGGTTTAT : 1707641 94 : roIleLeuSerHisMetValIlePheSerValLeuMetTyrPheAspThrTyrGlu : 111 !:!:|||:!!!!.:!!:!!:!!||||||:!!||||||! !.!!||| !||| heValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAspGlyTyr--- 1707642 : TTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGGATAT--- : 1707695 112 : ValIleLeu >>>> Target Intron 1 >>>> AlaAspValSerProGly : 120 :!!:!::!! 457 bp ! !|||..! !! ! ! LeuValMet++ ++GluAspThrProIleMet 1707696 : TTGGTGATGgt.........................agGAAGATACTCCCATTATG : 1708176 121 : ThrArgLeuIlePhePhePheHisMetIleGlySerPheThrHisIleIlePhePh : 139 !||||||! !|||!!.||||||:!:! |||!!!.!. !!!.:!::!:.!.|| GlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuMetPh 1708177 : CAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGATGTT : 1708233 140 : eThrTyrIleCysAsnGlyLeuValGluGluSerThrAsnIleSerThrAlaSerT : 158 |||||||! !|||:!! !!|||:!!..!|||||| !|||:!::!!!.!|||! !| eThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIleT 1708234 : CACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATAT : 1708290 159 : yrSerGlyTrpTrpMetIleLeuProMetThrGluThrGlyArgLysIleArgLys : 176 ||..! !!! !|||!!: !||||||||| !..!:!!||||||! !:!:|||||| yrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLys 1708291 : ACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAA : 1708344 177 : AspThrArgIleMetIleMetLysSerMetArgProCysTyrLeuSerAlaGlyGl : 195 ||| !! !.!!:!:||| !:!|||! !||||||! !|||!!!||| !!|| AspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGl 1708345 : GATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGG : 1708401 196 : yPhePheProValThrLeuGluThrSerThrAla >>>> Target Intron 2 : 207 |||||||||||||:!!|||||||||! !|||:!! 759 bp yPhePheProValSerLeuGluThrTyrThrSer++ 1708402 : ATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt.................... : 1708439 208 : >>>> LeuIleSerSerThrMetSerTyrPheThrLeuMetArgGlu : 220 :!!:!!|||!!!.!! !|||||||||||||||:!:|||:!! ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgLys 1708440 : .....agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTACGAAAA : 1709237 vulgar: gi|350397298|ref|XP_003484832.1| 3 220 . KQ414915.1 1707361 1709237 + 397 M 57 171 G 0 12 M 50 150 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707362 1709237 397 + . gene_id 2 ; sequence gi|350397298|ref|XP_003484832.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1707362 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707362 1707703 . + . insertions 12 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709237 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709237 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1707362 1709237 397 + . alignment_id 2 ; Query gi|350397298|ref|XP_003484832.1| ; Align 1707362 4 171 ; Align 1707545 61 150 ; Align 1707695 112 9 ; Align 1708161 115 276 ; Align 1709196 207 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397298|ref|XP_003484832.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 290 Query range: 116 -> 223 Target range: 1702965 -> 1703659 117 : ValSerProGlyThrArgLeuIlePhePhePheHisMetIleGlySerPheThrHi : 135 |||!!!|||!.!! !||||||! !||| ! ||||||!!::!!||||||.!. !!! ValThrProAlaArgArgLeuThrPheValPheHisIleValGlySerLeuCysGl 1702966 : GTGACTCCAGCGAGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCA : 1703020 136 : sIleIlePhePheThrTyrIleCysAsnGlyLeuValGluGluSerThrAsnIleS : 154 .:!!:!:.!.|||||||||! !|||:!!||||||:!!||||||||||||||||||. nLeuLeuLeuPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleG 1703021 : ACTATTGCTATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCG : 1703077 155 : erThrAlaSerTyrSerGlyTrpTrpMetIleLeuProMetThrGluThrGlyArg : 172 !!||||||! !||| !||| |||!!: !||||||||| !:!!.!!|||||| lyThrAlaIleTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArg 1703078 : GGACTGCGATATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGA : 1703131 173 : LysIleArgLysAspThrArgIleMetIleMetLysSerMetArgProCysTyrLe : 191 !:!:!:|||!:!||| !! !!!::!:|||:!:!:!|||! !:! !! !!! !|| ArgLeuArgArgAspLeuThrMetValIleValArgSerArgLysSerSerCysLe 1703132 : AGGTTGAGAAGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTT : 1703188 192 : uSerAlaGlyGlyPhePheProValThrLeuGluThrSerThrAla >>>> Tar : 207 |!!!|||.!!|||||||||||||||:!!|||||||||!!!|||.!! uThrAlaSerGlyPhePheProValSerLeuGluThrCysThrThr++ 1703189 : AACTGCCAGCGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGgt........ : 1703238 208 : get Intron 1 >>>> LeuIleSerSerThrMetSerTyrPheThrLeuMetA : 219 373 bp :!!:!!|||!!!.!!||||||||||||||||||:!:| ++ValLeuSerThrAlaMetSerTyrPheThrLeuLeuA 1703239 : .................agGTGCTCAGTACAGCGATGTCATACTTCACTTTATTAA : 1703645 220 : rgGluSerSerIle : 223 ||.!.|||! !:!! rgHisSerPheVal 1703646 : GGCACTCTTTTGTA : 1703659 vulgar: gi|350397298|ref|XP_003484832.1| 116 223 . KQ414915.1 1702965 1703659 + 290 M 90 270 5 0 2 I 0 369 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702966 1703659 290 + . gene_id 3 ; sequence gi|350397298|ref|XP_003484832.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702966 1703235 . + . KQ414915.1 exonerate:protein2genome:local exon 1702966 1703235 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1703236 1703237 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1703236 1703608 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1703607 1703608 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1703609 1703659 . + . KQ414915.1 exonerate:protein2genome:local exon 1703609 1703659 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702966 1703659 290 + . alignment_id 3 ; Query gi|350397298|ref|XP_003484832.1| ; Align 1702966 117 270 ; Align 1703609 207 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397298|ref|XP_003484832.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 243 Query range: 2 -> 205 Target range: 1681929 -> 1682808 3 : AsnCysTyrLeuHisThrGlnLeuLeuAlaValGlnGlnIleGlyAlaSerTyrIl : 21 ||| :::... ! !||| !|||:!!||| !!!. ||| !!!!!:! AsnAsnHisPheThrLeuGlnThrLeuSerValValHisSerGlyIleCysPheCy 1681930 : aataatcatttcaCTTTGCAGACATTATCTGTGGTGCATTCGGGAATTTGTTTCTG : 1681984 22 : eCysProAspAsnPheLeuCysValLeuAsnLeuHisValValTyrGlnPheArgM : 40 !||| !|||||||||||||||:!!|||!:!:!!||||||! ! ||||||!:!! sCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLysI 1681985 : TTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAGA : 1682041 41 : etLeuGlnAsnThrLeuValAsnLeuTrpSerAsnIleAspGluArgThrAspIle : 58 !:|||||||||! !||| !!..:!!! !|||.!.! ......::: leLeuGlnAsnLysLeuGlnThrValLeuSerGluLysSerSerLys--------- 1682042 : TTTTACAAAACAAACTCCAAACAGTATTGAGTGAGAAatcttcgaaa--------- : 1682089 59 : ValGluTyrSerAsnGluCysTyrValMetLeuGluLysCysIleProLysHisGl : 77 ||| ||| ! ! ||| ! !!!!:!!:!!|||:!!! ! ! |||!! ---GluLysSerAlaGlyLeuTyrLysGluPheLysGluCysValGlnTyrHisHi 1682090 : ---gaaaaatcagctGGACTGTATAAAGAGTTCAAGGAGTGCGTACAGTATCATCA : 1682140 78 : nSerLeuIleGluPheSerAlaLysLeuAspAspIleTyrThrLeuProIleLeuS : 96 .! !|||:!!..!::: ||||||::: :!!!:! !:!!|||:!::!!! sLeuLeuLeuSerTyrValGluLysLeuGluTyrValPheCysValProLeuMetI 1682141 : TTTGCTTCTTTCGtacgtggaaaaattggaatacgTATTTTGTGTCCCGTTGATGA : 1682197 97 : erHisMetValIlePheSerValLeuMetTyrPheAspThrTyrGluValIleLeu : 114 !!!.:!!:!!:!:! !|||:!!:!!:!!! ! !!... !!:!:!!:!! !||| leGlnLeuLeuValSerSerIleValLeuCysValSerGlyPheGlnLeuSerLeu 1682198 : TTCAATTGCTGGTGTCTAGCATAGTTCTGTGCGTCTCGGGGTTTCAACTATCATTG : 1682251 115 : >>>> Target Intron 1 >>>> AlaAspValSerProGlyThrArgLeu : 123 285 bp !.!:!!! ! ! ! !! !|||||| ++ ++ValAsnGlyValLeuMetLysArgLeu 1682252 : gt.........................agGTGAACGGTGTATTGATGAAACGATTG : 1682563 124 : IlePhePhePheHisMetIleGlySerPheThrHisIleIlePhePheThrTyrIl : 142 :!:|||.!. !:!!.!.:!!|||.!! ! ! ...|||.........||| ! LeuPheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePheLeuIleThrLeuAs 1682564 : TTGTTCCTAAATTACTTTCTCGGTGGAGTGATacagatatttttaataacccTAAA : 1682620 143 : eCysAsnGlyLeuValGluGluSerThrAsnIleSerThrAlaSerTyrSerGlyT : 161 !||||||! !:!!:!!|||:!!||| ! !|||.!!||||||! !|||||| !! nCysAsnAspIleMetGluGlnSerGlyAlaIleGlyThrAlaIleTyrSerCysA 1682621 : TTGCAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAGCGATCTACAGTTGTA : 1682677 162 : rpTrpMetIleLeuProMetThrGluThrGlyArgLysIleArgLysAspThrArg : 179 ||| ! ! ::: ... :!!.!!|||||||||! !! ! snTrpGlu---ArgAsnValTyrAsnHisPheTyrGlnPheArgLysAspMetMet 1682678 : ATTGGGAG---AGGAAtgtttataatcatttttaccAGTTCAGAAAGGATATGATG : 1682728 180 : IleMetIleMetLysSerMetArgProCysTyrLeuSerAlaGlyGlyPhePhePr : 198 |||:!:!!::!:::!:!!! ||||||||||||:!!||||||!.! !|||||||| IleValMetValArgAlaLysArgProCysTyrIleSerAlaAlaLysPhePhePr 1682729 : ATTGTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGCAGCGAAATTCTTTCC : 1682785 199 : oValThrLeuGluThrSerThr : 205 |:!!:!!||||||:!!! !||| oIleSerLeuGluSerPheThr 1682786 : AATCTCCCTTGAATCGTTCACG : 1682808 vulgar: gi|350397298|ref|XP_003484832.1| 2 205 . KQ414915.1 1681929 1682808 + 243 M 53 159 G 4 0 M 55 165 5 0 2 I 0 281 3 0 2 M 49 147 G 1 0 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681930 1682808 243 + . gene_id 4 ; sequence gi|350397298|ref|XP_003484832.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681930 1682253 . + . KQ414915.1 exonerate:protein2genome:local exon 1681930 1682253 . + . insertions 0 ; deletions 4 KQ414915.1 exonerate:protein2genome:local splice5 1682254 1682255 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1682254 1682538 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1682537 1682538 . + . intron_id 0 ; splice_site "aG" KQ414915.1 exonerate:protein2genome:local cds 1682539 1682808 . + . KQ414915.1 exonerate:protein2genome:local exon 1682539 1682808 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1681930 1682808 243 + . alignment_id 4 ; Query gi|350397298|ref|XP_003484832.1| ; Align 1681930 3 159 ; Align 1682089 60 165 ; Align 1682539 115 147 ; Align 1682686 165 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397298|ref|XP_003484832.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 201 Query range: 91 -> 215 Target range: 1695548 -> 1695920 92 : LeuProIleLeuSerHisMetValIlePheSerValLeuMetTyrPheAspThrTy : 110 |||! !:!:||| !:!!.!. !|||||| |||:::||| !:!! !! LeuLeuLeuLeuLeuTyrPheHisIlePheLeu***LeuIleTyrProAsnTyrSe 1695549 : TTACTACTGCTCCTATATTTTCATATCttcctttaattaatttacccTAATTATTC : 1695603 111 : rGluValIleLeuAlaAspValSerProGlyThrArgLeuIlePhePhePheHisM : 129 ! ! !!:!!! !.!!||| ! !!|||..!! !!.!:!! !!!. ! .!!:!!: rIlePheValGlnThrAspSerProProSerArgAsnValGlyLeuValLeuAsnL 1695604 : CATATTTGTACAGACAGACTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACC : 1695660 130 : etIleGlySerPheThrHisIleIlePhePheThrTyrIleCysAsnGlyLeuVal : 147 !! !|||!!!!!. !!!.:!!.!!.!.|||||||||! !|||:!!||||||..! euAlaGlyThrLeuCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThr 1695661 : TGGCAGGCACTTTGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACA : 1695714 148 : GluGluSerThrAsnIleSerThrAlaSerTyrSerGlyTrpTrpMetIleLeuPr : 166 ..!||||||! !:!!:!!|||! !||| !!:!:!! !! !||| ! !||||| ArgGluSerMetAspValSerArgAlaValPheAlaArgProTrpAlaAsnLeuPr 1695715 : AGAGAGAGCATGGACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCC : 1695771 167 : oMetThrGluThrGlyArgLysIleArgLysAspThrArgIleMetIleMetLysS : 185 |||| !..!!.!|||!:!!..:!:|||:!!..!! !! !!!::!!||||||!:!| oMetAspArgAsnGlyLysSerValArgGlnSerMetLeuMetValIleMetArgS 1695772 : AATGGATAGAAATGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGT : 1695828 186 : erMetArgProCysTyrLeuSerAlaGlyGlyPhePheProValThrLeuGluThr : 203 ||! ||| !|||! !|||!!!|||.!!|||||||||||||||:!!||||||||| erAsnArgCysCysCysLeuThrAlaSerGlyPhePheProValSerLeuGluThr 1695829 : CGAACAGGTGTTGCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACT : 1695882 204 : SerThrAlaLeuIleSerSerThrMetSerTyrPhe : 215 ! !|||!.!:!!|||!:!! ! !! !||| !||| TyrThrGlyValIleAsn***AspThrSerIlePhe 1695883 : TACACTGGGGTAATTAATTAAGATACGTCCATTTTT : 1695920 vulgar: gi|350397298|ref|XP_003484832.1| 91 215 . KQ414915.1 1695548 1695920 + 201 M 124 372 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1695549 1695920 201 + . gene_id 5 ; sequence gi|350397298|ref|XP_003484832.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1695549 1695920 . + . KQ414915.1 exonerate:protein2genome:local exon 1695549 1695920 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1695549 1695920 201 + . alignment_id 5 ; Query gi|350397298|ref|XP_003484832.1| ; Align 1695549 92 372 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397298|ref|XP_003484832.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 7 -> 48 Target range: 1711879 -> 1712002 8 : ThrGlnLeuLeuAlaValGlnGlnIleGlyAlaSerTyrIleCysProAspAsnPh : 26 .!!|||:!!|||:!!!.! ! |||||||||!.!|||||| !||| !|||||| ! AlaGlnValLeuSerAlaTyrGlnIleGlyValSerTyrGlyCysPheAspAsnVa 1711880 : GCACAGGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGGTTGCTTCGACAACGT : 1711934 27 : eLeuCysValLeuAsnLeuHisValValTyrGlnPheArgMetLeuGlnAsnThrL : 45 !||||||:!!:!!|||||||||:!!!.! !|||||||||!!:||||||:!!! !| lLeuCysIleMetAsnLeuHisLeuAlaThrGlnPheArgIleLeuGlnHisArgL 1711935 : TCTATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAATACTGCAACATAGAC : 1711991 46 : euValAsnLeu : 48 ||||||||:!! euValAsnIle 1711992 : TGGTGAATATA : 1712002 vulgar: gi|350397298|ref|XP_003484832.1| 7 48 . KQ414915.1 1711879 1712002 + 125 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711880 1712002 125 + . gene_id 6 ; sequence gi|350397298|ref|XP_003484832.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1711880 1712002 . + . KQ414915.1 exonerate:protein2genome:local exon 1711880 1712002 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711880 1712002 125 + . alignment_id 6 ; Query gi|350397298|ref|XP_003484832.1| ; Align 1711880 8 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397298|ref|XP_003484832.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 4 -> 57 Target range: 1694851 -> 1695010 5 : TyrLeuHisThrGlnLeuLeuAlaValGlnGlnIleGlyAlaSerTyrIleCysPr : 23 :!!||| ! !||| !|||..!||| ! !!.:!!||| !!!!|||!!:||| HisLeuPheLeuGlnThrLeuCysValTyrHisValGlyIleCysTyrMetCysPh 1694852 : CACCTATTTCTGCAGACACTTTGCGTGTACCATGTCGGTATATGTTACATGTGCTT : 1694906 24 : oAspAsnPheLeuCysValLeuAsnLeuHisValValTyrGlnPheArgMetLeuG : 42 !||||||.!!||| !!:!!|||||||||||||||!.! !|||||||||!!:|||| eAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGlnPheArgIleLeuG 1694907 : CGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAATTTCGTATCCTTC : 1694963 43 : lnAsnThrLeuValAsnLeuTrpSerAsnIleAspGluArgThrAsp : 57 || !! !!!!:!!|||||| ! !:! |||!!::!!!:!|||||| lnTyrArgPheMetAsnLeuSerAsnValIleGluLysGlnThrAsp 1694964 : AATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAACAGAC : 1695010 vulgar: gi|350397298|ref|XP_003484832.1| 4 57 . KQ414915.1 1694851 1695010 + 123 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694852 1695010 123 + . gene_id 7 ; sequence gi|350397298|ref|XP_003484832.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1694852 1695010 . + . KQ414915.1 exonerate:protein2genome:local exon 1694852 1695010 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694852 1695010 123 + . alignment_id 7 ; Query gi|350397298|ref|XP_003484832.1| ; Align 1694852 5 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397298|ref|XP_003484832.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 4 -> 72 Target range: 1699620 -> 1699824 5 : TyrLeuHisThrGlnLeuLeuAlaValGlnGlnIleGlyAlaSerTyrIleCysPr : 23 !:!:!! !.!!|||:!!|||:!!:!! ! !!.:!!|||!.!!!!||||||||| PheValPheAlaGlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPh 1699621 : TTTGTGTTTGCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTT : 1699675 24 : oAspAsnPheLeuCysValLeuAsnLeuHisValValTyrGlnPheArgMetLeuG : 42 !||||||.!!||||||:!!:!!|||||||||!.!!.! !|||||||||!!:|||| eAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuG 1699676 : CGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGC : 1699732 43 : lnAsnThrLeuValAsnLeuTrpSerAsnIleAspGluArgThrAspIleValGlu : 60 || !!! !||| !|||||| ! ..!!..! ! :!!!:!..!||| ! !||| lnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGlu 1699733 : AATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAA : 1699786 61 : TyrSerAsnGluCysTyrValMetLeuGluLysCys : 72 ! !||| ! ! ! !.!. !|||!!.||| SerSerAlaAlaLeuSerArgPheAlaGluAsnCys 1699787 : TCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGT : 1699824 vulgar: gi|350397298|ref|XP_003484832.1| 4 72 . KQ414915.1 1699620 1699824 + 123 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699621 1699824 123 + . gene_id 8 ; sequence gi|350397298|ref|XP_003484832.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1699621 1699824 . + . KQ414915.1 exonerate:protein2genome:local exon 1699621 1699824 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699621 1699824 123 + . alignment_id 8 ; Query gi|350397298|ref|XP_003484832.1| ; Align 1699621 5 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397298|ref|XP_003484832.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 4 -> 72 Target range: 1702001 -> 1702205 5 : TyrLeuHisThrGlnLeuLeuAlaValGlnGlnIleGlyAlaSerTyrIleCysPr : 23 !:!:!! !.!!|||:!!|||:!!:!! ! !!.:!!|||!.!!!!||||||||| PheValPheAlaGlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPh 1702002 : TTTGTGTTTGCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTT : 1702056 24 : oAspAsnPheLeuCysValLeuAsnLeuHisValValTyrGlnPheArgMetLeuG : 42 !||||||.!!||||||:!!:!!|||||||||!.!!.! !|||||||||!!:|||| eAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuG 1702057 : CGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGC : 1702113 43 : lnAsnThrLeuValAsnLeuTrpSerAsnIleAspGluArgThrAspIleValGlu : 60 || !!! !||| !|||||| ! ..!!..! ! :!!!:!..!||| ! !||| lnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGlu 1702114 : AATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAA : 1702167 61 : TyrSerAsnGluCysTyrValMetLeuGluLysCys : 72 ! !||| ! ! ! !.!. !|||!!.||| SerSerAlaAlaLeuSerArgPheAlaGluAsnCys 1702168 : TCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGT : 1702205 vulgar: gi|350397298|ref|XP_003484832.1| 4 72 . KQ414915.1 1702001 1702205 + 123 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702002 1702205 123 + . gene_id 9 ; sequence gi|350397298|ref|XP_003484832.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702002 1702205 . + . KQ414915.1 exonerate:protein2genome:local exon 1702002 1702205 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702002 1702205 123 + . alignment_id 9 ; Query gi|350397298|ref|XP_003484832.1| ; Align 1702002 5 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 1116 Query range: 0 -> 402 Target range: 1704894 -> 1709240 1 : MetSerSerArgGlnValLysAspLeuSerIleIleIleThrSerPheTyrMetLy : 19 |||!!!|||!:!:!! !!:!|||:!!|||:!:! !:!!|||:!!||||||:!!|| MetThrSerLysLysAsnArgAspValSerValSerValThrAlaPheTyrLeuLy 1704895 : ATGACTTCGAAGAAGAACAGGGACGTATCAGTGAGCGTCACAGCTTTCTACTTGAA : 1704949 20 : sPheValGlyPheTrpLeuAlaAsnAsnTyrValGluLysArgArgArgAsnValA : 38 |.!!:!!|||||||||||||||:!!!.!|||! !|||||||||||||||!!. !!| sIleIleGlyPheTrpLeuAlaAspThrTyrGluGluLysArgArgArgLysPheA 1704950 : AATCATCGGCTTCTGGTTAGCTGACACTTACGAGGAGAAACGTCGAAGAAAGTTCG : 1705006 39 : laLeuSerTyrThrLeuPheAlaValLeuLeuSerLeuSerThrGluAlaArgAsp : 56 ||! !!:!! !|||:!!.!! !:!!:!!! !:!!:!! ! !|||!.!|||||| laGlnAsnCysThrIleLeuMetLeuMetCysAlaValLeuLeuGluValArgAsp 1705007 : CGCAGAATTGCACGATACTTATGCTTATGTGCGCTGTGCTGCTTGAGGTGAGGGAT : 1705060 57 : LeuTyrPheSerTrpGlyAspLeuGly >>>> Target Intron 1 >>>> : 66 :!!||| !! !|||||||||!!!||| 1391 bp IleTyrHisIleTrpGlyAspPheGly++ ++ 1705061 : ATCTATCACATCTGGGGAGATTTCGGCgt.........................ag : 1706479 67 : AspSerIleTyrValIleCysAsnValIleThrIleValLeuValValValLysIl : 84 ! ! !:!!||||||!!:||||||:!!:!!|||:!:! !:!! !:!! !!||||| AlaValValTyrValMetCysAsnIleLeuThrValGlyIleSerLeuPheLysIl 1706480 : GCCGTTGTTTACGTAATGTGCAACATTCTAACAGTGGGCATAAGTTTGTTCAAGAT : 1706535 85 : ePheIleLeuLeuIleTyrAsnGluGluLeuLeuAspIleIleAspTyrAlaLysI : 103 |!!.:!!! !:!!! ...|||:::...|||::::::||| ||||||!:!! eLeuValSerMetArgSerLysGluLysPheLeuGluLeuIleLysTyrAlaArgT 1706536 : CTTGGTCTCGATGAGGagtaaggaaaaatttttggaattaattaaatacgcCAGAA : 1706592 104 : leAsnPheTrpHisLeuAsnTyrAspSerHisGluGlnMetIleValAspAsnCys : 121 ||||||||||||! !:!!|||||||||!!.|||||||||||||||:!!.!.||| hrAsnPheTrpHisSerAspTyrAspSerGlnGluGlnMetIleValAsnGluCys 1706593 : CGAATTTCTGGCACTCGGATTATGACTCGCAGGAGCAAATGATTGTGAACGAGTGT : 1706646 122 : ArgArgThrCysThrIlePheValCysValPheThrPhePheAlaGlnGlyThrVa : 140 !:!|||:!!||||||.!!.!!:!!|||||||||!.!|||||||||.!.|||||||| LysArgSerCysThrPheLeuIleCysValPheAsnPhePheAlaAsnGlyThrVa 1706647 : AAACGTTCTTGTACATTCCTCATATGCGTGTTTAATTTCTTCGCTAATGGGACAGT : 1706703 141 : lIleGlyPheIleAlaArgProLeuLeu{I} >>>> Target Intron 2 >> : 150 | !|||!:!||| !||||||:!!:!!{ } 266 bp lSerGlyTyrIleIleArgProIleVal{G}++ 1706704 : GTCTGGATACATAATCAGGCCAATTGTA{G}gt....................... : 1706736 151 : >> {le}AsnTyrGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrp : 166 { !}!:: |||||||||||||||:!:||||||||| ! !!|||.!.||| ++{lu}SerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrp 1706737 : ..ag{AA}AgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGG : 1707047 167 : LeuProGluCysHisLeuSerMetThrProTyrPheGluLeuMetPheMetLeuGl : 185 :!! !!:! !! !!!!||||||||||||!:!|||:!!:!:|||! !! !|| Ile---AspPheProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGl 1707048 : ATT---GACTTTCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCA : 1707101 186 : n >>>> Target Intron 3 >>>> ValValCysSerTyrHisValGlyVa : 194 | 276 bp ||| !! ! ! :!!||| !!:! n++ ++ValPheIleValMetTyrValCysIl 1707102 : Ggt.........................agGTTTTTATCGTAATGTACGTTTGCAT : 1707404 195 : lCysTyrHisCysPheAspAsnIleLeuCysIleLeuAsnLeuHisAlaAlaAlaG : 213 ! !!|||! !|||.!!||||||.!!||||||!!::!!|||||||||.!!|||.!!| eSerTyrLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrG 1707405 : AAGCTACCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTC : 1707461 214 : lnPheArgIleLeuGlnHisArgLeuThrAsnMetCysAsnThrAsnAspCysAla : 231 |||||||||||||||||:!!||||||:!!|||:!!|||..!.!!|||!!: !!::: lnPheArgIleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSer 1707462 : AATTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgc : 1707515 232 : GluPheTyrGluValSerGluLysSerSerTyrSerIleHisArgTyrGlyLysLe : 250 ::: ... ...::: !!||| !!||| !.!. !!|||!.!|||!! AspLysIleSer---LysLysThrProSerAsnSerAspGluCysTyrAlaLysPh 1707516 : gataaaatttcg---aaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTT : 1707569 251 : uArgThrTyrIleGlnGlnHisGlnAlaLeuThrAspPheCysLysLysLeuGluA : 269 !!:!!.!! !|||||||||||||||||||||! !!!:!:!|||!!.:!!|||:!!! eLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnG 1707570 : CAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAG : 1707626 270 : spValPheAsnLeuIleValLeuGlyGlnValSerLeuPheSerLeuLeuIleCys : 287 !:||||||..!|||.!!||||||!.!||||||! !|||||||||||||||!!:||| luValPheGlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCys 1707627 : AGGTGTTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGC : 1707680 288 : LeuAspGlyTyrLeuIleLeuMet >>>> Target Intron 4 >>>> Asp : 296 |||||||||||||||:!: ||| 457 bp !!: LeuAspGlyTyrLeuVal---Met++ ++Glu 1707681 : CTCGATGGATATTTGGTG---ATGgt.........................agGAA : 1708161 297 : AspAlaProAlaThrArgArgPheThrPheAlaPheHisIleThrGlyCysMetCy : 315 |||.!!||| !! !!:!|||.!!|||||| !||||||:!!|||||||||:!!|| AspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCy 1708162 : GATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTG : 1708218 316 : sGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgAspSerAlaAsnV : 334 |||||||||||||||||||||||||||||||||||||||||||!!:||| !|||| sGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnV 1708219 : CCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACG : 1708275 335 : alAlaAsnAlaAlaTyrLysSerLeuTrpSerArgLeuProMetAspGlnPheGly : 352 ||||||||||| !||| ! !!!! !|||! !!.!||||||||||||::!! !||| alAlaAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGly 1708276 : TGGCCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGG : 1708329 353 : LysIleLeuArgLysAspLeuIleLeuValIleMetArgSerAlaThrProSerCy : 371 ::!!!:|||||||||||||||! !!!!|||||| |||||| !..!|||!!!|| ArgMetLeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCy 1708330 : CGAATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTG : 1708386 372 : sLeuThrAlaCysGlyPhePheThrValSerLeuGluThrTyrThrGly >>>> : 388 |||||||||||||||||||||| !!|||||||||||||||||||||..! sLeuThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708387 : TCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt..... : 1708439 389 : Target Intron 5 >>>> IleLeuSerSerAlaValSerTyrPheThrLeuL : 399 759 bp |||||||||!!!|||!.!|||||||||||||||| ++IleLeuSerThrAlaAlaSerTyrPheThrLeuL 1708440 : ....................agATTTTAAGTACCGCAGCGTCATACTTCACACTGC : 1709229 400 : euArgAsnGln : 402 |||||!!.||| euArgLysGln 1709230 : TACGAAAACAA : 1709240 vulgar: gi|350397203|ref|XP_003484804.1| 0 402 . KQ414915.1 1704894 1709240 + 1116 M 65 195 5 0 2 I 0 1387 3 0 2 M 84 252 S 0 1 5 0 2 I 0 262 3 0 2 S 1 2 M 17 51 G 1 0 M 17 51 5 0 2 I 0 272 3 0 2 M 50 150 G 1 0 M 57 171 G 1 0 M 1 3 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1704895 1709240 1116 + . gene_id 1 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1704895 1705089 . + . KQ414915.1 exonerate:protein2genome:local exon 1704895 1705089 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1705090 1705091 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1705090 1706480 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1706479 1706480 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1706481 1706733 . + . KQ414915.1 exonerate:protein2genome:local exon 1706481 1706733 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1706734 1706735 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1706734 1706999 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1706998 1706999 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707000 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707000 1707103 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 5 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 5 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 4 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709240 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709240 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1704895 1709240 1116 + . alignment_id 1 ; Query gi|350397203|ref|XP_003484804.1| ; Align 1704895 1 195 ; Align 1706481 66 252 ; Align 1707002 151 51 ; Align 1707053 169 51 ; Align 1707380 186 150 ; Align 1707530 237 171 ; Align 1707701 295 3 ; Align 1708161 296 276 ; Align 1709196 388 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 653 Query range: 147 -> 403 Target range: 1694346 -> 1696260 148 : LeuLeuIleAsnTyrGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTr : 166 !!!||| !||| !|||||||||:!!|||||||||!!:||||||||||||||||| PheLeuAlaAsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTr 1694347 : TTTTTAGCAAATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTG : 1694401 167 : pLeuProGluCysHisLeuSerMetThrProTyrPheGluLeuMetPheMetLeuG : 185 |:!! !!:! !! ! !.!!:!!:!!||||||!:!|||:!!:!:|||!!::!!| pVal---AspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleG 1694402 : GGTT---GACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATAC : 1694455 186 : ln >>>> Target Intron 1 >>>> ValValCysSerTyrHisValGlyV : 194 || 409 bp ..!:!!||| !||||||||||||: ln++ ++ThrLeuCysValTyrHisValGlyI 1694456 : AGgt.........................agACACTTTGCGTGTACCATGTCGGTA : 1694891 195 : alCysTyrHisCysPheAspAsnIleLeuCysIleLeuAsnLeuHisAlaAlaAla : 212 !!|||||| |||||||||||||||||| !!:!!||||||||||||!.!|||.!! leCysTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThr 1694892 : TATGTTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACT : 1694945 213 : GlnPheArgIleLeuGlnHisArgLeuThrAsnMetCysAsnThrAsnAspCysAl : 231 ||||||||||||||||||:!!|||!!!! !|||:!! !!|||..!! !!!: GlnPheArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLysGl 1694946 : CAATTTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCA : 1695002 232 : aGluPheTyrGluValSerGlu<-><->LysSerSerTyrSerIleHisArgTyrG : 248 ! ! ! !... ||| ! !!!!:!!:!!!!:!! !!!!!||| nThrAspGlyArgGluLeuGluIleGlyTyrThrAsnPheThrValAspSerTyrL 1695003 : AACAGACGGTcgagaattggaaattggtTACACAAATTTCACAGTCGATAGTTACT : 1695059 249 : lyLysLeuArgThrTyrIleGlnGlnHisGlnAlaLeuThrAspPheCysLysLys : 266 !:!!|||!:!!:!! !:!:||| ! |||||||||||||||! !!:!||||||||| euGlnLeuLysSerCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLys 1695060 : TACAATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAAAG : 1695113 267 : LeuGluAspValPheAsnLeuIleValLeuGlyGlnValSerLeuPheSerLeuLe : 285 ||||||:!!:!!|||:::|||:!!||||||||||||||| !!!!.!.:!!:!!:! LeuGluAsnIlePheSerLeuLeuValLeuGlyGlnValLeuPheLeuAlaMetVa 1695114 : TTGGAGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGT : 1695170 286 : uIleCysLeuAspGlyTyrLeuIleLeuMet >>>> Target Intron 2 >> : 296 !:!!||||||! ||||||! !:!!!!!:!! 415 bp lLeuCysLeuValGlyTyrGlnLeuPheLeu++ 1695171 : ACTTTGCCTCGTGGGATATCAGCTATTTCTGgt....................... : 1695205 297 : >> AspAspAlaProAlaThrArgArgPheThrPheAlaPheHisIleThrGlyC : 313 |||:!!||| !!:!!|||!.! !! !!!.!.!.!!:!!:!:.!!||| ++ThrAspSerProProSerArgAsnValGlyLeuValLeuAsnLeuAlaGlyT 1695206 : ..agACAGACTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCA : 1695669 314 : ysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgAspSer : 331 !:!!|||||||||!!!||||||||||||||||||||| !!|||! !|||!!:||| hrLeuCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGluSer 1695670 : CTTTGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGC : 1695723 332 : AlaAsnValAlaAsnAlaAlaTyrLysSerLeuTrpSerArgLeuProMetAspGl : 350 !:!!|||::!!..|||!.!!:! !!!!! !|||:!!!.!||||||||||||:: MetAspValSerArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAspAr 1695724 : ATGGACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAG : 1695780 351 : nPheGlyLysIleLeuArgLysAspLeuIleLeuValIleMetArgSerAlaThrP : 369 ! !||||||! !:!!|||:!!..!:!!:!!:!!||||||||||||||| !! ! gAsnGlyLysSerValArgGlnSerMetLeuMetValIleMetArgSerAsnArgC 1695781 : AAATGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGT : 1695837 370 : roSerCysLeuThrAlaCysGlyPhePheThrValSerLeuGluThrTyrThrGly : 387 !!!!|||||||||||| !!||||||||| !!|||||||||||||||||||||||| ysCysCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrGly 1695838 : GTTGCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGG : 1695891 388 : >>>> Target Intron 3 >>>> IleLeuSerSerAlaValSerTyrPhe : 396 319 bp :!!||||||!!!|||:!!||||||||| ++ ++ValLeuSerThrAlaMetSerTyrPhe 1695892 : gt.........................agGTCCTCAGCACTGCAATGTCATACTTT : 1696237 397 : ThrLeuLeuArgAsnGlnSer : 403 ||||||||||||.!...!!!! ThrLeuLeuArgGlnSerThr 1696238 : ACACTACTGAGACAATCGACT : 1696260 vulgar: gi|350397203|ref|XP_003484804.1| 147 403 . KQ414915.1 1694346 1696260 + 653 M 20 60 G 1 0 M 17 51 5 0 2 I 0 405 3 0 2 M 53 159 G 0 6 M 57 171 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694347 1696260 653 + . gene_id 2 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694347 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694347 1694457 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 2 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696260 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696260 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694347 1696260 653 + . alignment_id 2 ; Query gi|350397203|ref|XP_003484804.1| ; Align 1694347 148 60 ; Align 1694407 169 51 ; Align 1694867 186 159 ; Align 1695032 239 171 ; Align 1695618 296 276 ; Align 1696213 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 549 Query range: 62 -> 297 Target range: 1698538 -> 1699977 63 : AspLeuGlyAspSerIleTyrValIleCysAsnValIleThrIleValLeuValVa : 81 ...||| |||!!! !|||..! !||||||:!!:!! !:!::!!:!!|||:! GlnLeu***AspCysAlaTyrThrAlaCysAsnIleLeuCysLeuIleMetValLe 1698539 : caattataggACTGTGCTTACACCGCTTGTAACATTCTCTGCCTGATTATGGTACT : 1698593 82 : lValLysIlePheIleLeuLeuIleTyrAsnGluGluLeuLeuAspIleIleAspT : 100 !:!!|||:!:|||:!!:!!!!!|||:!!!..:!!|||!!!:!!!!::!:::: | uLeuLysLeuPheValValPheIleHisArgLysGluPheIleGluLeuLeuValT 1698594 : GTTAAAGCTGTTCGTTGTATTCATACACAGGAAAGAATTCATCGAACTgcttgtat : 1698650 101 : yrAlaLysIleAsnPheTrpHisLeuAsnTyrAspSerHisGluGlnMetIleVal : 118 || ||||||||||||||||||||||||!!!:!!|||! !:!::!::!! yrMetTyrLysAsnPheTrpHisLeuAsnTyrAspCysAsnGluLeuLeuLeuLeu 1698651 : atatgtacaaaaatttttggcACCTCAATTACGATTGCAACGAACTACTACTGCTG : 1698704 119 : AspAsnCysArgArgThrCysThrIlePheValCysValPheThrPhePheAlaGl : 137 .!.:!!|||||||||! ! !!||||||! !:!! :!!.!!!.!|||! !||||| GlnAspCysArgArgIleSerThrIleCysIleThrLeuIleAsnPheCysAlaGl 1698705 : CAAGACTGCAGAAGAATTAGCACTATATGTATCACGTTGATTAACTTCTGTGCTCA : 1698761 138 : nGlyThrValIleGlyPheIleAlaArgProLeuLeu{I} >>>> Target In : 150 |||||||:!!:!!.!!!:!:!: !! !|||:!!:!!{ } 232 nGlyThrIleValSerTyrValLeuThrProIleIle{A}++ 1698762 : AGGCACAATTGTCAGCTACGTGCTAACACCTATTATA{G}gt.............. : 1698803 151 : tron 1 >>>> {le}AsnTyrGlyLysAsnGluSerGluArgIleLeuProPhe : 163 bp { !}||| |||:::|||...|||!!:|||:!:||||||||| ++{la}AsnIleGlyArgAsnSerSerAspArgValLeuProPhe 1698804 : ...........ag{ca}aatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTC : 1699071 164 : AsnMetTrpLeuProGluCysHisLeuSerMetThrProTyrPheGluLeuMetPh : 182 |||||||||:!! !!:! ! ||||||:!!:!!||| !:!|||:!!:!!|| AsnMetTrpVal---AspLeuProLeuSerValSerProThrTyrGluIleValPh 1699072 : AACATGTGGGTT---GATTTGCCGCTGTCTGTGTCACCAACGTACGAAATAGTGTT : 1699125 183 : eMetLeuGln >>>> Target Intron 2 >>>> ValValCysSerTyrHi : 191 |:!!|||||| 499 bp |||:!!! !! !||||| eValLeuGln++ ++ValLeuSerLeuTyrHi 1699126 : CGTGCTTCAGgt.........................agGTTCTGTCTTTGTACCA : 1699651 192 : sValGlyValCysTyrHisCysPheAspAsnIleLeuCysIleLeuAsnLeuHisA : 210 |||||||||||||||| !||||||||||||:!!||||||:!::!!|||||||||| sValGlyValCysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisA 1699652 : CGTTGGTGTATGTTACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACG : 1699708 211 : laAlaAlaGlnPheArgIleLeuGlnHisArgLeuThrAsnMetCysAsnThrAsn : 228 |||||.!!||||||||||||||||||:!!||||||:!!|||:!! !!:!!|||||| laAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsn 1699709 : CGGCTACTCAATTTCGTATACTGCAATACAGGTTATCGAACTTGGGTGATACGAAC : 1699762 229 : <-><->AspCysAlaGluPheTyrGluValSerGluLysSerSerTyrSerIleHi : 245 .!. ! !!!: ! ! ... !:!!! !||| !!!:!:!! :! ArgLysGlnValAspAspAsnGluSerSerAlaAlaLeuSerArgPheAlaGluAs 1699763 : AGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAA : 1699819 246 : sArgTyrGlyLysLeuArgThrTyrIleGlnGlnHisGlnAlaLeuThrAspPheC : 264 ! !!||| ! !!!!!:!!.!! !:!!!:!||||||||| !! !! ! !:!| nCysTyrLysAlaPheLysAsnCysValArgGlnHisGlnAsnHisIleThrTyrC 1699820 : CTGTTATAAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCATATCACGTACT : 1699876 265 : ysLysLysLeuGluAspValPheAsnLeuIleValLeuGlyGlnValSerLeuPhe : 282 || ! !:!|||.!.!!::!!|||!..:!!||||||||||||!!.:!! !:!!||| ysHisArgLeuAsnGluIlePheThrValIleValLeuGlyHisIleLeuValPhe 1699877 : GTCACAGATTGAACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTC : 1699930 283 : SerLeuLeuIleCysLeuAspGlyTyrLeuIleLeuMetAspAsp : 297 ||||||||||||||||||! !|||!:!! !:!:|||:!:!!::!! SerLeuLeuIleCysLeuValGlyPheGlnValLeuValGluAsn 1699931 : AGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTCGTAGAAAAC : 1699977 vulgar: gi|350397203|ref|XP_003484804.1| 62 297 . KQ414915.1 1698538 1699977 + 549 M 87 261 S 0 1 5 0 2 I 0 228 3 0 2 S 1 2 M 17 51 G 1 0 M 17 51 5 0 2 I 0 495 3 0 2 M 43 129 G 0 6 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1698539 1699977 549 + . gene_id 3 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1698539 1698800 . + . KQ414915.1 exonerate:protein2genome:local exon 1698539 1698800 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1698801 1698802 . + . intron_id 1 ; splice_site "Gt" KQ414915.1 exonerate:protein2genome:local intron 1698801 1699032 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699031 1699032 . + . intron_id 0 ; splice_site "Ag" KQ414915.1 exonerate:protein2genome:local cds 1699033 1699136 . + . KQ414915.1 exonerate:protein2genome:local exon 1699033 1699136 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1699137 1699138 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699137 1699635 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1699634 1699635 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699636 1699977 . + . KQ414915.1 exonerate:protein2genome:local exon 1699636 1699977 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1698539 1699977 549 + . alignment_id 3 ; Query gi|350397203|ref|XP_003484804.1| ; Align 1698539 63 261 ; Align 1699035 151 51 ; Align 1699086 169 51 ; Align 1699636 186 129 ; Align 1699771 229 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 386 Query range: 184 -> 391 Target range: 1711882 -> 1712657 185 : GlnValValCysSerTyrHisValGlyValCysTyrHisCysPheAspAsnIleLe : 203 ||||||:!!! !:!!|||!!.:!!|||||| !!||| !||||||||||||:!!|| GlnValLeuSerAlaTyrGlnIleGlyValSerTyrGlyCysPheAspAsnValLe 1711883 : CAGGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGGTTGCTTCGACAACGTTCT : 1711937 204 : uCysIleLeuAsnLeuHisAlaAlaAlaGlnPheArgIleLeuGlnHisArgLeuT : 222 |||||||:!!||||||||| !|||.!!|||||||||||||||||||||||||||. uCysIleMetAsnLeuHisLeuAlaThrGlnPheArgIleLeuGlnHisArgLeuV 1711938 : ATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAATACTGCAACATAGACTGG : 1711994 223 : hrAsnMet<-><->CysAsnThrAsnAspCysAlaGluPheTyrGluValSer<-> : 238 .!|||!!: !!.!:!!!..!. !!||| !|||..!||| alAsnIleAsnGlyLeuLysSerLysGlnThrProGluLysGlyGluThrSerIle 1711995 : TGAATATAAACGGTCTGAAGAGCAAACAGACACCGGAGAAAGGTGAAACGTCGATT : 1712048 239 : <->GluLysSerSerTyrSerIleHisArgTyrGlyLysLeuArgThrTyrIleGl : 255 !!:..!!!!..!!:!:!! !:!! !|||! ! !!!!:!! !! !:!!!: IleAspSerThrGluPheAlaAspAsnSerTyrAspValPheLysArgCysValAr 1712049 : ATAGATTCGACAGAATTTGCGGATAACTCTTACGACGTTTTCAAAAGATGCGTTCG : 1712105 256 : nGlnHisGlnAlaLeuThrAspPheCysLysLysLeuGluAspValPheAsnLeuI : 274 :|||||||||:!!|||! !! !||||||:::|||||||||::::::|||!:!:!!| gGlnHisGlnSerLeuMetAlaPheCysGluLysLeuGluGluMetPheSerMetI 1712106 : TCAACATCAATCTCTGATGGCTTTCTgcgagaaactcgaagaaatgTTCAGTATGA : 1712162 275 : leValLeuGlyGlnValSerLeuPheSerLeuLeuIleCysLeuAspGlyTyrLeu : 292 ||:!!|||||||||:!!! !:!!||||||:!!!!!!!:|||||||||! !! !! ! leIleLeuGlyGlnLeuLeuValPheSerIlePheMetCysLeuAspValCysGln 1712163 : TTATACTGGGGCAATTGTTAGTGTTCAGTATTTTTATGTGTCTCGACGTGTGCCAA : 1712216 293 : IleLeuMetAspAspAlaProAlaThr >>>> Target Intron 1 >>>> : 302 :!!|||:!!! !..!:!! !::!! ! 148 bp ValLeuLeuValSerSerIleSerLys-+ ++ 1712217 : GTACTTCTGGTTAGTTCAATTAGCAAAat.........................ag : 1712392 303 : ArgArgPheThrPheAlaPheHisIleThrGlyCysMetCysGlnLeuLeuMetPh : 320 ! ||||||||| ... ! ! !|||...! ! !:!!!!!! !!: MetIlePheThrPheHisLeuAlaGlyCysMetCysGlnLeuLeuMetPheThrTy 1712393 : AtgattttcacgtttcacctAGCGGGATGTATGTGTCAATTGCTGATGTTTACGTA : 1712448 321 : eThrTyrSerCysAspCysLeuIleArgAspSerAlaAsnValAlaAsnAlaAlaT : 339 !!:!! !..!||| :!!|||! !!!:||| !||||||.!!.!.|||!.!| rSerCysAspCys------IleIleThrGluSerLeuAsnValThrGluAlaValT 1712449 : CAGCTGCGATTGT------ATAATAACGGAAAGTTTGAACGTGACGGAAGCGGTGT : 1712499 340 : yrLysSerLeuTrpSerArgLeuProMetAspGlnPheGlyLysIleLeuArgLys : 357 || ! .!!! !||| !!||||||||||||..! ! |||!:!!!::!!|||||| yrAspGlyProTrpProArgLeuProMetSerThrArgGlyArgMetIleArgLys 1712500 : ACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGAAGAATGATAAGGAAG : 1712553 358 : AspLeuIleLeuValIleMetArgSerAlaThrProSerCysLeuThrAlaCysGl : 376 ||||||||||||||||||!!:|||||| !..!|||!!!|||||||||||| ! || AspLeuIleLeuValIleIleArgSerArgValProCysCysLeuThrAlaArgGl 1712554 : GATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTGCTTGACCGCCAGAGG : 1712610 377 : yPhePheThrValSerLeuGluThrTyrThrGlyIleLeuSerSer : 391 |||||||..!:!!|||||||||||||||||| !:!!:!!..!||| yPhePheValIleSerLeuGluThrTyrThrLysValIleAspSer 1712611 : ATTCTTCGTAATATCTTTGGAAACGTATACGAAGGTAATTGACTCT : 1712657 vulgar: gi|350397203|ref|XP_003484804.1| 184 391 . KQ414915.1 1711882 1712657 + 386 M 40 120 G 0 6 M 13 39 G 0 6 M 64 192 5 0 2 I 0 144 3 0 2 M 23 69 G 2 0 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711883 1712657 386 + . gene_id 4 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1711883 1712245 . + . KQ414915.1 exonerate:protein2genome:local exon 1711883 1712245 . + . insertions 12 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712246 1712247 . + . intron_id 1 ; splice_site "AT" KQ414915.1 exonerate:protein2genome:local intron 1712246 1712393 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1712392 1712393 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1712394 1712657 . + . KQ414915.1 exonerate:protein2genome:local exon 1712394 1712657 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local similarity 1711883 1712657 386 + . alignment_id 4 ; Query gi|350397203|ref|XP_003484804.1| ; Align 1711883 185 120 ; Align 1712009 225 39 ; Align 1712054 238 192 ; Align 1712394 302 69 ; Align 1712463 327 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 275 Query range: 300 -> 394 Target range: 1702974 -> 1703256 301 : ThrArgArgPheThrPheAlaPheHisIleThrGlyCysMetCysGlnLeuLeuMe : 319 .!!||||||.!!||||||!.!|||||||||..!||| !!:!:||||||||||||:! AlaArgArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLeuLe 1702975 : GCGAGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATTGCT : 1703029 320 : tPheThrTyrSerCysAspCysLeuIleArgAspSerAlaAsnValAlaAsnAlaA : 338 :|||||||||||||||||| !!||||||..!!!:|||.!!|||:!!!.!!.!||| uPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaI 1703030 : ATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGA : 1703086 339 : laTyrLysSerLeuTrpSerArgLeuProMetAspGlnPheGlyLysIleLeuArg : 356 !||| .!!! !|||! !!.!||||||||||||:!! !|||!:!! |||||| leTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArg 1703087 : TATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGA : 1703140 357 : LysAspLeuIleLeuValIleMetArgSerAlaThrProSerCysLeuThrAlaCy : 375 !:!||||||! !:!!||||||:!:|||||| !! ! !!||||||||||||||| ! ArgAspLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSe 1703141 : AGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAG : 1703197 376 : sGlyPhePheThrValSerLeuGluThrTyrThrGlyIleLeuSerSerAlaValS : 394 !||||||||| !!|||||||||||||||! !||| !:!!!!!!:!! !:!! !!| rGlyPhePheProValSerLeuGluThrCysThrThrValPheAsnPheSerPheS 1703198 : CGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATTTCTCATTCT : 1703254 395 : er : 394 || er 1703255 : CT : 1703256 vulgar: gi|350397203|ref|XP_003484804.1| 300 394 . KQ414915.1 1702974 1703256 + 275 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702975 1703256 275 + . gene_id 5 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702975 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1702975 1703256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702975 1703256 275 + . alignment_id 5 ; Query gi|350397203|ref|XP_003484804.1| ; Align 1702975 301 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 260 Query range: 184 -> 295 Target range: 1702013 -> 1702352 185 : GlnValValCysSerTyrHisValGlyValCysTyrHisCysPheAspAsnIleLe : 203 ||||||:!!! !! !||||||||||||||||||||| !||||||||||||:!!|| GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 204 : uCysIleLeuAsnLeuHisAlaAlaAlaGlnPheArgIleLeuGlnHisArgLeuT : 222 ||||:!::!!|||||||||||||||.!!||||||||||||||||||:!!||||||: uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 223 : hrAsnMetCysAsnThrAsn<-><->AspCysAlaGluPheTyrGluValSerGlu : 238 !!|||:!! !!:!!|||||| .!. ! !!!: ! ! ... !:!!! erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1702179 239 : LysSerSerTyrSerIleHisArgTyrGlyLysLeuArgThrTyrIleGlnGlnHi : 257 !||| !!!:!:!! :!! !!||| ! !!!!!:!!.!! !:!!!:!||||| LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHi 1702180 : CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACA : 1702236 258 : sGlnAlaLeuThrAspPheCysLysLysLeuGluAspValPheAsnLeuIleValL : 276 |||| !! !! ! !:!||| ! !:!|||.!.!!::!!|||!..:!!||||||| sGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValL 1702237 : TCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTAC : 1702293 277 : euGlyGlnValSerLeuPheSerLeuLeuIleCysLeuAspGlyTyrLeuIleLeu : 294 |||||!!.:!! !:!!|||||||||||||||||||||! !|||!:!! !:!:||| euGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeu 1702294 : TCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTC : 1702347 295 : Met : 295 :!! Val 1702348 : GTG : 1702352 vulgar: gi|350397203|ref|XP_003484804.1| 184 295 . KQ414915.1 1702013 1702352 + 260 M 44 132 G 0 6 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1702352 260 + . gene_id 6 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702014 1702352 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702352 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1702352 260 + . alignment_id 6 ; Query gi|350397203|ref|XP_003484804.1| ; Align 1702014 185 132 ; Align 1702152 229 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 197 Query range: 150 -> 232 Target range: 1681725 -> 1682091 151 : AsnTyrGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpLeuProGl : 169 ||| !||||||!:!!!:..!|||||||||||||||||| .!. ! :!! !.! AsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAs 1681726 : AACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAA : 1681780 170 : uCysHisLeuSerMetThrProTyrPheGluLeuMetPheMetLeuGln >>>> : 186 .! ! ! !|||:!!|||||||||:::|||::::::|||:!!:!!:!! nLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681781 : CTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt..... : 1681833 187 : Target Intron 1 >>>> ValValCysSerTyrHisValGlyValCysTyrH : 197 120 bp ..!:!!! ! ! ||| !|||:!!|||!:! ++ThrLeuSerValValHisSerGlyIleCysPheC 1681834 : ....................agACATTATCTGTGGTGCATTCGGGAATTTGTTTCT : 1681984 198 : isCysPheAspAsnIleLeuCysIleLeuAsnLeuHisAlaAlaAlaGlnPheArg : 215 !||||||||||||.!!||||||||||||!:!:!!|||!.!!.!!.!||||||!:! ysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLys 1681985 : GTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAG : 1682038 216 : IleLeuGlnHisArgLeuThrAsnMetCysAsnThrAsnAspCysAlaGlu : 232 |||||||||:!!!:!||| !!..:!:! !:! !!!.... ||| IleLeuGlnAsnLysLeuGlnThrValLeuSerGluLysSerSerLysGlu 1682039 : ATTTTACAAAACAAACTCCAAACAGTATTGAGTGAGAAatcttcgaaagaa : 1682091 vulgar: gi|350397203|ref|XP_003484804.1| 150 232 . KQ414915.1 1681725 1682091 + 197 M 35 105 5 0 2 I 0 116 3 0 2 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681726 1682091 197 + . gene_id 7 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681726 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681726 1681830 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682091 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682091 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681726 1682091 197 + . alignment_id 7 ; Query gi|350397203|ref|XP_003484804.1| ; Align 1681726 151 105 ; Align 1681951 186 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 195 Query range: 150 -> 224 Target range: 1688056 -> 1688454 151 : AsnTyrGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpLeuProGl : 169 ||| .!!::!|||:!!|||!!:|||:!!|||||||||!!.||||||:!! !! AsnMetSerArgAsnLysSerAspArgValLeuProPheLysMetTrpVal---As 1688057 : AATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTGGGTC---GA : 1688108 170 : uCysHisLeuSerMetThrProTyrPheGluLeuMetPheMetLeuGln >>>> : 186 :!! ! |||||| |||||||||!:!||||||||||||! !!!||| pTrpProLeuSerAspThrProTyrTyrGluLeuMetPheThrPheGln++ 1688109 : TTGGCCGCTATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAGgt..... : 1688161 187 : Target Intron 1 >>>> ValValCysSerTyrHisValGlyValCysTyrH : 197 179 bp !.!:!!||| !|||!!.:!!|||!.!..!||| ++AlaLeuCysValTyrGlnIleGlyAlaAlaTyrI 1688162 : ....................agGCGCTGTGCGTGTATCAAATCGGCGCCGCCTATA : 1688371 198 : isCysPheAspAsnIleLeuCysIleLeuAsnLeuHisAlaAlaAlaGlnPheArg : 215 !|||! !|||!...!!!!!|||!!:||||||:!!|||!.! !..!||||||||| leCysSerAspThrPhePheCysMetLeuAsnMetHisValIleCysGlnPheArg 1688372 : TCTGCTCCGACACGTTTTTCTGCATGCTGAACATGCACGTGATCTGCCAGTTCCGT : 1688425 216 : IleLeuGlnHisArgLeuThrAsnMet : 224 ||||||.!.:!!|||||| !|||||| IleLeuAsnTyrArgLeuLeuAsnMet 1688426 : ATACTAAATTACAGACTGTTGAACATG : 1688454 vulgar: gi|350397203|ref|XP_003484804.1| 150 224 . KQ414915.1 1688056 1688454 + 195 M 17 51 G 1 0 M 17 51 5 0 2 I 0 175 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688057 1688454 195 + . gene_id 8 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688057 1688158 . + . KQ414915.1 exonerate:protein2genome:local exon 1688057 1688158 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1688159 1688160 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688159 1688337 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1688336 1688337 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1688338 1688454 . + . KQ414915.1 exonerate:protein2genome:local exon 1688338 1688454 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688057 1688454 195 + . alignment_id 8 ; Query gi|350397203|ref|XP_003484804.1| ; Align 1688057 151 51 ; Align 1688108 169 51 ; Align 1688338 186 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 0 -> 67 Target range: 1700446 -> 1700647 1 : MetSerSerArgGlnValLysAspLeuSerIleIleIleThrSerPheTyrMetLy : 19 |||!!!|||!:!:!! !!:!|||:!!|||:!:! !:!!|||:!!||||||:!!|| MetThrSerLysLysAsnArgAspValSerValSerValThrAlaPheTyrLeuLy 1700447 : ATGACTTCGAAGAAGAACAGGGACGTATCAGTGAGCGTCACAGCTTTCTACTTGAA : 1700501 20 : sPheValGlyPheTrpLeuAlaAsnAsnTyrValGluLysArgArgArgAsnValA : 38 |.!!:!!|||||||||||||||:!!!.!|||! !|||||||||||||||!!. !!| sIleIleGlyPheTrpLeuAlaAspThrTyrGluGluLysArgArgArgLysPheA 1700502 : AATCATCGGCTTCTGGTTAGCTGACACTTACGAGGAGAAACGTCGAAGAAAGTTCG : 1700558 39 : laLeuSerTyrThrLeuPheAlaValLeuLeuSerLeuSerThrGluAlaArgAsp : 56 ||! !!:!! !|||:!!.!! !:!!:!!! !:!!:!! ! !|||!.!|||||| laGlnAsnCysThrIleLeuMetLeuMetCysAlaValLeuLeuGluValArgAsp 1700559 : CGCAGAATTGCACGATACTTATGCTTATGTGCGCTGTGCTGCTTGAGGTGAGGGAT : 1700612 57 : LeuTyrPheSerTrpGlyAspLeuGlyAspSer : 67 :!!||| !! !|||||||||!!!|||! ||| IleTyrHisIleTrpGlyAspPheGlyValSer 1700613 : ATCTATCACATCTGGGGAGATTTCGGCGTAAGT : 1700647 vulgar: gi|350397203|ref|XP_003484804.1| 0 67 . KQ414915.1 1700446 1700647 + 177 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1700447 1700647 177 + . gene_id 9 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1700447 1700647 . + . KQ414915.1 exonerate:protein2genome:local exon 1700447 1700647 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1700447 1700647 177 + . alignment_id 9 ; Query gi|350397203|ref|XP_003484804.1| ; Align 1700447 1 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 4 -> 69 Target range: 1692085 -> 1692280 5 : GlnValLysAspLeuSerIleIleIleThrSerPheTyrMetLysPheValGlyPh : 23 ||| !||||||:!!||||||:!! :!!! !|||! ||||||.!!||||||.! GlnSerLysAspIleSerIleValTrpSerPhePheLeuMetLysIleValGlyLe 1692086 : CAGAGTAAAGATATCTCGATCGTTTGGTCGTTCTTTTTGATGAAAATCGTAGGTCT : 1692140 24 : eTrpLeuAlaAsnAsnTyrValGluLysArgArgArgAsnValAlaLeuSerTyrT : 42 .||||||||| !:!! ! !.!|||:!!|||||||||||| !!||||||! !|||| uTrpLeuAlaAlaAspGluAlaGluGlnArgArgArgAsnPheAlaLeuIleTyrT 1692141 : GTGGCTAGCCGCCGACGAGGCTGAACAACGTCGGAGAAATTTCGCGCTGATTTACA : 1692197 43 : hrLeuPheAlaValLeuLeuSerLeuSerThrGluAlaArgAspLeuTyrPheSer : 60 ||||| !|||:!!!!!:!!:!!! !!!!! !! ! !||||||:!!|||!:!||| hrLeuAsnAlaIlePheIleAlaSerCysIleAlaMetArgAspIleTyrTyrSer 1692198 : CGCTGAACGCGATTTTTATCGCTTCGTGTATAGCAATGAGAGATATATACTATTCC : 1692251 61 : TrpGlyAspLeuGlyAspSerIleTyr : 69 ||||||:!!:!!..!! |||! !!:: TrpGlyAsnValAsnValSerThrTrp 1692252 : TGGGGAAACGTGAACGTGAGTACTTGG : 1692280 vulgar: gi|350397203|ref|XP_003484804.1| 4 69 . KQ414915.1 1692085 1692280 + 161 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1692086 1692280 161 + . gene_id 10 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1692086 1692280 . + . KQ414915.1 exonerate:protein2genome:local exon 1692086 1692280 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1692086 1692280 161 + . alignment_id 10 ; Query gi|350397203|ref|XP_003484804.1| ; Align 1692086 5 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 234 -> 295 Target range: 1688469 -> 1688652 235 : GluValSerGluLysSerSerTyrSerIleHisArgTyrGlyLysLeuArgThrTy : 253 ||| !!!!.!.! !!!!..!|||!!!! ! ! !!||| !||||||! ! !! GluArgThrAsnMetThrGluTyrThrAsnLysCysTyrThrLysLeuIleAspCy 1688470 : GAGCGAACGAACATGACCGAATACACGAACAAATGTTACACCAAGCTGATAGATTG : 1688524 254 : rIleGlnGlnHisGlnAlaLeuThrAspPheCysLysLysLeuGluAspValPheA : 272 !|||:!!.!.||||||:!!|||! !!!:|||||| !|||||||||:!!|||!:!! sIleLysAsnHisGlnSerLeuIleGluPheCysValLysLeuGluAsnValTyrT 1688525 : CATCAAAAATCATCAGTCGTTGATCGAGTTCTGCGTGAAACTCGAGAACGTGTACA : 1688581 273 : snLeuIleValLeuGlyGlnValSerLeuPheSerLeuLeuIleCysLeuAspGly : 290 ..|||! !:!!||||||!!.:!! !:!!||||||||||||!!:|||!!!||| ! hrLeuThrIleLeuGlyHisIleValValPheSerLeuLeuMetCysPheAspThr 1688582 : CGTTGACTATACTCGGCCACATAGTGGTCTTCAGCTTGTTGATGTGCTTCGACACG : 1688635 291 : TyrLeuIleLeuMet : 295 ||| !:!!:!!:!! TyrGluValValLeu 1688636 : TACGAGGTAGTTCTG : 1688652 vulgar: gi|350397203|ref|XP_003484804.1| 234 295 . KQ414915.1 1688469 1688652 + 131 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688470 1688652 131 + . gene_id 11 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1688470 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688470 1688652 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688470 1688652 131 + . alignment_id 11 ; Query gi|350397203|ref|XP_003484804.1| ; Align 1688470 235 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 149 -> 188 Target range: 1711234 -> 1711348 150 : IleAsnTyrGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpLeuPr : 168 :!:||| !|||!:!|||||||||!!:|||||||||||||||!!.||||||:!! ValAsnIleGlyArgAsnGluSerAspArgIleLeuProPheLysMetTrpIle-- 1711235 : GTGAATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTGGATT-- : 1711289 169 : oGluCysHisLeuSerMetThrProTyrPheGluLeuMetPheMetLeuGlnValV : 187 !!: ! !|||||||||||||||||||||:::...||| ||||||||| -AspIleProThrSerMetThrProTyrPheGluIlePhePheThrLeuGlnValH 1711290 : -GATATACCGACATCGATGACACcgtattttgaaatattcttcaccTTACAGGTAC : 1711343 188 : alCys : 188 !||| isCys 1711344 : ATTGT : 1711348 vulgar: gi|350397203|ref|XP_003484804.1| 149 188 . KQ414915.1 1711234 1711348 + 122 M 18 54 G 1 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711235 1711348 122 + . gene_id 12 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1711235 1711348 . + . KQ414915.1 exonerate:protein2genome:local exon 1711235 1711348 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1711235 1711348 122 + . alignment_id 12 ; Query gi|350397203|ref|XP_003484804.1| ; Align 1711235 150 54 ; Align 1711289 169 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 297 -> 326 Target range: 1712375 -> 1712462 298 : AlaProAlaThrArgArgPheThrPheAlaPheHisIleThrGlyCysMetCysGl : 316 ||| !!!.! !!:!!:!... |||...||||||::!.!!|||||||||||||| AlaSerValGlyLysGlnMetIlePheThrPheHisLeuAlaGlyCysMetCysGl 1712376 : GCATCTGTGGGTAAACAGAtgattttcacgtttcacctAGCGGGATGTATGTGTCA : 1712430 317 : nLeuLeuMetPheThrTyrSerCysAspCys : 326 ||||||||||||||||||||||||||||||| nLeuLeuMetPheThrTyrSerCysAspCys 1712431 : ATTGCTGATGTTTACGTACAGCTGCGATTGT : 1712462 vulgar: gi|350397203|ref|XP_003484804.1| 297 326 . KQ414915.1 1712375 1712462 + 118 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712376 1712462 118 + . gene_id 13 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1712376 1712462 . + . KQ414915.1 exonerate:protein2genome:local exon 1712376 1712462 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712376 1712462 118 + . alignment_id 13 ; Query gi|350397203|ref|XP_003484804.1| ; Align 1712376 298 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 0 -> 70 Target range: 1685751 -> 1685961 1 : MetSerSerArgGlnValLysAspLeuSerIleIleIleThrSerPheTyrMetLy : 19 |||..!:!!! !:!! !!:!|||:!!|||:!!! ||| :::|| MetGlnAlaThrLysTyrArgAspIleSerLeuLysCysGlyIlePheLeuLeuLy 1685752 : ATGCAGGCGACAAAATACAGGGATATTTCCCTCAAgtgtggaatttttcttttgaa : 1685806 20 : sPheValGlyPheTrpLeuAlaAsnAsnTyrValGluLysArgArgArgAsnValA : 38 |...||||||.!!|||:!!:!!! ||| !||||||:!!|||||||||!.. !!. sLeuValGlyLeuTrpMetSerMetAsnSerValGluGluArgArgArgArgPheT 1685807 : attagtCGGCCTCTGGATGTCCATGAACAGCGTCGAGGAGCGTCGAAGGAGGTTCA : 1685863 39 : laLeuSerTyrThrLeuPheAlaValLeuLeuSerLeuSerThrGluAlaArgAsp : 56 !!|||! ! :!!:!!||||||:!!! !! !.!!:!!! !..!.!.!.!!.!||| hrLeuPheGlySerValPheAlaLeuSerTyrGlyValTyrValAsnValAsnAsp 1685864 : CGTTGTTCGGATCAGTTTTCGCCCTTTCTTACGGCGTTTACGTGAACGTAAACGAT : 1685917 57 : LeuTyrPheSerTrpGlyAspLeuGlyAspSerIleTyrVal : 70 :!! ! !|||!::! !||||||.!!! |||!!: :!! IleLeuHisSerPheAspAspLeuSerValSerMetArgIle 1685918 : ATTCTTCACAGCTTCGATGATCTGAGCGTGAGTATGAGAATT : 1685961 vulgar: gi|350397203|ref|XP_003484804.1| 0 70 . KQ414915.1 1685751 1685961 + 106 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1685752 1685961 106 + . gene_id 14 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1685752 1685961 . + . KQ414915.1 exonerate:protein2genome:local exon 1685752 1685961 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1685752 1685961 106 + . alignment_id 14 ; Query gi|350397203|ref|XP_003484804.1| ; Align 1685752 1 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928873|ref|XP_012248903.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 91 -> 177 Target range: 1632 -> 1890 92 : ValLeuSerCysMetSerGlyPheIleValIleProLeuTyrProAlaPheLeuAspIleIl : 112 !.!:!! !|||:!:! ! !|||:!: !! |||:!! ||| !.!!|||||||||:! AlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLe 1633 : GCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTT : 1693 113 : eIleProLeuAsnGluThrArgGlnArgHisGlnMetPheArgLeuThrTyrPheLeuAspG : 133 !:!!||| !||||||:!!|||.!. ! ! !!:!:!! ! ! !|||||| !|||| uLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspG 1694 : ACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACG : 1756 134 : luAsnArgTyrPheTyrProIleTyrPheHisSerLeuTrpCysSerPheValThrValMet : 153 ||:!!!:!||| ! !||| ! |||! ! !! ! !.!.|||..! !! luHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyr 1757 : AGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTAC : 1816 154 : IleAlaValThrIleAspSerLeuTyrIleGlnIleValHisHisAspCysAlaIlePheAl : 174 :!: ! !!.!! !|||!!! !|||||| ! :!!|||!!.|||! !|||!.!:!:!!.|| ValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAl 1817 : GTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGC : 1879 175 : aIleCysGly : 177 |:!:! !||| aValSerGly 1880 : CGTGTCCGGg : 1890 vulgar: gi|815928873|ref|XP_012248903.1| 91 177 . KQ414921.1 1632 1890 + 134 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1633 1890 134 + . gene_id 1 ; sequence gi|815928873|ref|XP_012248903.1| ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1633 1890 . + . KQ414921.1 exonerate:protein2genome:local exon 1633 1890 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1633 1890 134 + . alignment_id 1 ; Query gi|815928873|ref|XP_012248903.1| ; Align 1633 92 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396456|ref|XP_003484556.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 317 -> 395 Target range: 807347 -> 807581 318 : TyrAlaMetCysTyrIleGlyGlnLeuLeuIleAsnGluSerGluAsnValArgLeuM : 337 ||| ! ..!||| |||.!. !||| :::..!!!!|||.!.:!! !! ! TyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluIleAlaGlnA 807348 : TACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAG : 807405 338 : etSerIleThrLeuAsnTrpTyrArgPheProMetLysLysAlaArgAsnLeuIleLe : 356 :!! ! !! ! !|||||||||! !! ! ! ! !||||||:!!|||:!!|| laAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLe 807406 : CCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTT : 807462 357 : uIleIleIleMetSerAsnTyrProIleLysLeuThrAlaGlyLysIleValAspIle : 375 ||||||| ! .!!|||! ||| !::::!!||||||||||||.!!||| !!: uIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheValProMet 807463 : GATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATG : 807519 376 : SerLeuAlaThrPheThrAspIleIleLysAlaSerValGlyTyrLeuAsnValLeuA : 395 !:!||| !||||||! !!!:|||:!:|||||||||! !..!||||||::!|||:!!! AsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSerValMetL 807520 : AATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGA : 807579 396 : rg : 395 :! ys 807580 : AG : 807581 vulgar: gi|350396456|ref|XP_003484556.1| 317 395 . KQ414940.1 807347 807581 + 144 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807348 807581 144 + . gene_id 1 ; sequence gi|350396456|ref|XP_003484556.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807348 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807348 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807348 807581 144 + . alignment_id 1 ; Query gi|350396456|ref|XP_003484556.1| ; Align 807348 318 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 292 -> 402 Target range: 807257 -> 807587 293 : GlyTyrTyrIleLeuSerGluTrpAlaAspGlnAsnValGlnSerLeuIleThrTyrI : 312 |||!:! !.!!||| !! !::! :!!:!! ! :!! !:!:! ! !. GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 313 : leMetIleTyrIleSerIleGlyPheAsnValPheLeuIleCysTyrIleGlyGluIl : 331 !!:!::!: :!:!!!:!: !.!!.!.:!!!:!||| !..!||| |||.!.! heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 332 : eLeuThrGluGlnSerLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyr : 350 !||| !..!!:!!!!:!!:!!:!!!.!:!!!.!!.!||| :!! !|||||| ! rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 351 : LeuProAspLysThrIleLeuAspLeuIleLeuIleIleAlaArgSerGlyValValV : 370 ! !! !! ! .!! ! !||||||:!!||||||||| !|||.!!..! ! ! CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 371 : alGlnIleThrAlaGlyLysMetValHisMetSerValTyrThrPheGlyAspValVa : 389 !!::|||||||||||||||.!.|||! |||!:!:!!!:!|||||| !!!::!!:! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 390 : lLysThrGlyPheAlaTyrLeuAsnLeuLeuArgGlnMet : 402 !|||.!!..! !:!!||||||::!:!!:!!!:! !||| uLysAlaSerGlySerTyrLeuSerValMetLysValMet 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: gi|350396511|ref|XP_003484578.1| 292 402 . KQ414940.1 807257 807587 + 144 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807587 144 + . gene_id 1 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807587 144 + . alignment_id 1 ; Query gi|350396511|ref|XP_003484578.1| ; Align 807258 293 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 293 -> 401 Target range: 807254 -> 807578 294 : ValGlyTyrTyrIleValThrGluTrpSerAspHisAspValArgSerLeuThrSerT : 313 ..!|||!:! !.!!:!!..!! !||| ! ||| ! !:!! ! !!!! ThrGlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgS 807255 : ACAGGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGA : 807312 314 : yrPheIleIlePheAlaSerValThrPheAsnThrPheLeuLeuCysTyrIleGlyGl : 332 !|||:!!:!:.!.!.!!!!:!! !.!!.!. !!:!|||! !..!||| |||.! erPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807313 : GCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 333 : uLeuLeuThrGluGlnCysMetLysValGlyGluIleValTyrMetThrAsnTrpTyr : 351 . !||| !..!!:! ! :!!:!!!.!:!! !!.!||| :!! !|||||| nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 352 : IleLeuProArgLysArgIleLeuGluLeuIleLeuIleIleAlaArgSerSerValV : 371 !! !! ! !! ! ! ! !!!:|||:!!||||||||| !|||.!!!:! ! ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 372 : alIleGluIleThrAlaGlyLysLeuIleHisMetSerIleHisThrPheGlyAspVa : 390 ! !...|||||||||||||||!!!:!!! |||!:!:!! !|||||| !!!::! roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 391 : lMetArgLeuAlaPheAlaTyrLeuAsnIleLeu : 401 !:!!!:! !:!! !:!!||||||::!:!!:!! eLeuLysAlaSerGlySerTyrLeuSerValMet 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATG : 807578 vulgar: gi|350396509|ref|XP_003484577.1| 293 401 . KQ414940.1 807254 807578 + 129 M 108 324 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807255 807578 129 + . gene_id 1 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807255 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807255 807578 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807255 807578 129 + . alignment_id 1 ; Query gi|350396509|ref|XP_003484577.1| ; Align 807255 294 324 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928873|ref|XP_012248903.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 90 -> 177 Target range: 32488 -> 32749 91 : PheValLeuSerCysMetSerGlyPheIleValIleProLeuTyrProAlaPheLeuAsp : 110 ||||||! !! ! ! !!:! !..!!:! !:!!:!:! !!!! ||| !.!!:!!||| PheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAsp 32489 : TTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGAC : 32546 111 : IleIleIleProLeuAsnGluThrArgGlnArgHisGlnMetPheArgLeuThrTyrPhe : 130 :!:||| ||||||||||||:!!|||!!.!.! ! ! !!:! ! ! !|||||| ValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPhe 32547 : GTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTC : 32606 131 : LeuAspGluAsnArgTyrPheTyrProIleTyrPheHisSerLeuTrpCysSerPheVal : 150 :!!|||:::...:::|||||| |||||| !!.|||! !||| !! ! ! !:!! ValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeu 32607 : GTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTT : 32666 151 : ThrValMetIleAlaValThrIleAspSerLeuTyrIleGlnIleValHisHisAspCys : 170 !:!!! !:!!|||..!.!!:::||||||::::::||| ...::! !|||! !||| GlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCys 32667 : GGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGC : 32726 171 : AlaIlePheAlaIleCysGly : 177 |||! !||| !||| !||| AlaLysPheAsnIleLeuGly 32727 : GCCAAATTCAATATTCTCGGG : 32749 vulgar: gi|815928873|ref|XP_012248903.1| 90 177 . KQ415081.1 32488 32749 + 148 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32489 32749 148 + . gene_id 1 ; sequence gi|815928873|ref|XP_012248903.1| ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32489 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32489 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32489 32749 148 + . alignment_id 1 ; Query gi|815928873|ref|XP_012248903.1| ; Align 32489 91 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928873|ref|XP_012248903.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 98 -> 177 Target range: 22065 -> 22302 99 : PheIleValIleProLeuTyrProAlaPheLeuAspIleIleIleProLeuAsnGluThr : 118 |||:!!..! !!||| ||| ! ! :!! !! !||| |||! !||||||:!! PheValThrAlaThrLeuLeuProIleValMetCysArgIleGlnProArgAsnGluSer 22066 : TTCGTTACAGCGACGCTTCTACCAATCGTAATGTGTAGAATACAGCCACGTAACGAATCT : 22123 119 : ArgGlnArgHisGlnMetPheArgLeuThrTyrPheLeuAspGluAsnArgTyrPheTyr : 138 !.! !!.! ! !|||!:: ||||||...|||:!!.!.!:! !!.!. HisValHisThrIleProPheGlnGlyGluTyrPhePheAspGlnGluLysAsnMetVal 22124 : CACGTACACACTATTCCGTTTCAaggggaatattttttcgaccAAGAGAAAAATATGGTG : 22183 139 : ProIleTyrPheHisSerLeuTrpCysSerPheValThrValMetIleAlaValThrIle : 158 !||| .!.|||! !:!! ! :!!||| ! |||||||||! !! ! PheIleIleLeuHisMetIleLeuThrValThrIleThrHisCysIleAlaValMetThr 22184 : TTCATTATACTGCACATGATACTCACAGTTACAATCACACATTGCATTGCTGTAATGACT : 22243 159 : AspSerLeuTyrIleGlnIleValHisHisAspCysAlaIlePheAlaIleCysGly : 177 |||! !:!!! :!! :!!..! |||! !||||||:!:||||||:!! !||| AspMetIleLeuLeuValLeuThrMetHisAlaCysAlaLeuPheAlaValValGly 22244 : GATATGATTTTGCTAGTTTTAACCATGCATGCCTGTGCCTTGTTCGCTGTTGTTGGG : 22302 vulgar: gi|815928873|ref|XP_012248903.1| 98 177 . KQ415081.1 22065 22302 + 102 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 22066 22302 102 + . gene_id 2 ; sequence gi|815928873|ref|XP_012248903.1| ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 22066 22302 . + . KQ415081.1 exonerate:protein2genome:local exon 22066 22302 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 22066 22302 102 + . alignment_id 2 ; Query gi|815928873|ref|XP_012248903.1| ; Align 22066 99 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928873|ref|XP_012248903.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 91 -> 177 Target range: 208 -> 466 92 : ValLeuSerCysMetSerGlyPheIleValIleProLeuTyrProAlaPheLeuAspIleIleI : 113 !.!:!! !|||:!:! ! !|||:!: !! |||:!! ||| !.!!|||||||||:!!: AlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuL 209 : GCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTAC : 272 114 : leProLeuAsnGluThrArgGlnArgHisGlnMetPheArgLeuThrTyrPheLeuAspGluAs : 134 !!||| !||||||:!!|||.!. ! ! !!:!:!! ! ! !|||||| !||||||:! euProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHi 273 : TACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCA : 335 135 : nArgTyrPheTyrProIleTyrPheHisSerLeuTrpCysSerPheValThrValMetIleAla : 155 !!:!||| ! !||| ! |||! ! !! ! !.!.|||..! !! :!: ! sLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyr 336 : TAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTAC : 398 156 : ValThrIleAspSerLeuTyrIleGlnIleValHisHisAspCysAlaIlePheAlaIleCysG : 177 !!.!! !|||!!! !|||||| ! :!!|||!!.|||! !|||!.!:!:!!.|||:!:! !| PheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerG 399 : TTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCG : 464 178 : ly : 177 || ly 465 : Gg : 466 vulgar: gi|815928873|ref|XP_012248903.1| 91 177 . LHQN01023902.1 208 466 + 134 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 209 466 134 + . gene_id 1 ; sequence gi|815928873|ref|XP_012248903.1| ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 209 466 . + . LHQN01023902.1 exonerate:protein2genome:local exon 209 466 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 209 466 134 + . alignment_id 1 ; Query gi|815928873|ref|XP_012248903.1| ; Align 209 92 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928873|ref|XP_012248903.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 94 -> 177 Target range: 4993 -> 5242 95 : CysMetSerGlyPheIleValIleProLeuTyrProAlaPheLeuAspIleIleIleProLe : 115 ||| :!! !|||!!: !:!:|||!!! !! !!.!!|||||||||:!!!!:||||| CysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLe 4994 : TGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTT : 5054 116 : uAsnGluThrArgGlnArgHisGlnMetPheArgLeuThrTyrPheLeuAspGluAsnArgT : 136 ||||||||||||| !||| :!:!:!! ! ! !||||||:!!||||||:!!!:!| uAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysT 5055 : GAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAAT : 5117 137 : yrPheTyrProIleTyrPheHisSerLeuTrpCysSerPheValThrValMetIleAlaVal : 156 || !||| !||| |||! !! ! ! ! :!! !:!! :!! ! ! yrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCys 5118 : ATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGC : 5177 157 : ThrIleAspSerLeuTyrIleGlnIleValHisHisAspCysAlaIlePheAlaIleCysGl : 177 .!! !|||:!! !|||:!: ! !|||!!.|||! !|||!.!:!:!!.||||||...|| AlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGl 5178 : GCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGG : 5240 178 : y : 177 | y 5241 : G : 5242 vulgar: gi|815928873|ref|XP_012248903.1| 94 177 . LHQN01025741.1 4993 5242 + 149 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4994 5242 149 + . gene_id 1 ; sequence gi|815928873|ref|XP_012248903.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4994 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4994 5242 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4994 5242 149 + . alignment_id 1 ; Query gi|815928873|ref|XP_012248903.1| ; Align 4994 95 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 368 Query range: 1 -> 165 Target range: 489 -> 3 2 : ThrAsnGlnProValThrIleGlyAlaSerAlaLysAlaAsnSerAspTyrGlyLeuGlnLeuA : 23 !.!:!!:!! !!|||..!! !! ! !!:! !! |||!:!|||||||||.!!||||||! !| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpA 489 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGA : 426 24 : snArgTrpPheLeuLysProIleGlyValTrpProSerPheProSerThrThrArgPheGluLy : 44 |||||||| :!!||| !||||||..!||||||..!||| !!||| !.!.!!|||!: snArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSer------AsnLeuGluAr 425 : ATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCG------AACCTCGAGAG : 369 45 : sIleValSerIleThrLeuAsnValIleCysTyrSerSerIleIleLeuThrThrIleProCys : 65 !! !:!!||| !! !||||||||||||||||||!!!:!!|||:!!!!!:!!! !||||||||| gAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCys 368 : AAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGT : 306 66 : LeuValArgMetPheLeuGluAspGluSerIleTyrLeuLysLeuLysSerLeuGlyProValS : 87 ! !:!!!.!:!:.!.|||||| ! ! !!!!.!!||| !|||:!!|||! !|||||||||:!!| SerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyProLeuS 305 : TCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGA : 240 88 : erHisTrpIleValSerGlyAlaAsnTyrThrThrLeuLeuLeuArgSerLysAspIleArgGl : 108 ||||||||:!: !!!!! ! !!:!||||||! !|||||||||||| !!||| !|||!.!!! erHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHi 239 : GCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCA : 177 109 : nCysMetGluHisMetGluAlaAspTrpGlnThrValThrArgGluLysAspGlnTrpValMet : 129 .! !:!:.!.|||||||||.!!||||||::!|||..!||||||:::::: ::: |||||| sPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMet 176 : CTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATG : 114 130 : LeuLysAsnAlaLysPheGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnSerGlyI : 151 |||||| !!|||||||||.!!||||||!.!||| !! !||||||||||||!!:!!..!!|||| LeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyI 113 : CTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTA : 48 152 : leMetCysPheIlePheValAlaAlaMetAspThrValGluIle : 165 ||:!: ! !:! ! !!:!!.!!||| !|||:!!! :!! leLeuGlyTyrCysValMetThrAlaSerThrThrMetValVal 47 : TACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTC : 4 vulgar: gi|350396511|ref|XP_003484578.1| 1 165 . LHQN01027980.1 489 3 - 368 M 37 111 G 2 0 M 125 375 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4 489 368 - . gene_id 1 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4 489 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4 489 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 4 489 368 - . alignment_id 1 ; Query gi|350396511|ref|XP_003484578.1| ; Align 490 2 111 ; Align 379 41 375 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 345 Query range: 298 -> 403 Target range: 4581 -> 4085 299 : GluTrpAlaAspGlnAsnValGlnSerLeuIleThrTyrIleMetIleTyrIleSerIleGl : 319 ||||||.!!!!:...:!!!.!|||! !|||.!!|||||||||:!:! ! !:!!:!!:!!! GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValVa 4581 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTGT : 4521 320 : yPheAsnValPheLeuIleCysTyrIleGlyGluIleLeuThrGluGln >>>> Target : 336 ! |||...||||||||||||||||||.!!!!:! |||||||||||| 9 lSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4520 : TtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt........... : 4468 337 : Intron 1 >>>> SerLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrL : 351 2 bp !!! !|||||||||||||||||||||||||||:!!|||||||||| ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrL 4467 : ..............agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATC : 4333 352 : euProAspLysThrIleLeuAspLeuIleLeuIleIleAlaArgSerGlyValValValGln : 371 |||||.!.!:!! !||||||||||||||||||||||||.!!||||||..!|||||||||:!! euProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGlu 4332 : TGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAA : 4273 372 : IleThrAlaGlyLysMetValHisMetSerValTyrThrPheGlyAsp >>>> Target : 388 |||||||||||||||::: |||||||||:!!||||||||||||||| 89 IleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4272 : ATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt............ : 4220 389 : Intron 2 >>>> ValValLysThrGlyPheAlaTyrLeuAsnLeuLeuArgGlnMetTh : 403 bp ||||||||||||||||||||||||||||||:!!||| !!||||||:! ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMetSe 4219 : .............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAAATGTC : 4088 404 : r : 403 ! r 4087 : C : 4086 vulgar: gi|350396511|ref|XP_003484578.1| 298 403 . LHQN01027980.1 4581 4085 - 345 M 37 111 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4086 4581 345 - . gene_id 2 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4581 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4581 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4223 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 2 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 2 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 1 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4086 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4086 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4086 4581 345 - . alignment_id 2 ; Query gi|350396511|ref|XP_003484578.1| ; Align 4582 299 111 ; Align 4379 336 156 ; Align 4134 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 133 Query range: 334 -> 388 Target range: 1990 -> 1822 335 : GlnSerLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAspLysTh : 355 :!!!!!! |||||||||! ! !||||||||||||.!.|||||| ||| !!.!.||||| GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysTh 1990 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAAC : 1930 356 : rIleLeuAspLeuIleLeuIleIleAlaArgSerGlyValValValGlnIleThrAlaGlyL : 376 | !|||! !!!!:!!:!!||||||:!!||||||.!!:!!|||:!!:!!||||||||||||| rAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyL 1929 : TGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAA : 1867 377 : ysMetValHis<-><->MetSerValTyrThrPheGlyAspVal : 388 ||.!.|||:!! !|||||| ||||||||||||||| ysPheValTyr***ThrSerSerValAlaThrPheGlyAspVal 1866 : AATTCGTATACTGAACATCGTCTGTCGCAACATTTGGCGATGTG : 1823 vulgar: gi|350396511|ref|XP_003484578.1| 334 388 . LHQN01027980.1 1990 1822 - 133 M 45 135 G 0 6 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1823 1990 133 - . gene_id 3 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1823 1990 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1823 1990 . - . insertions 6 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1823 1990 133 - . alignment_id 3 ; Query gi|350396511|ref|XP_003484578.1| ; Align 1991 335 135 ; Align 1850 380 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 435 Query range: 1 -> 164 Target range: 486 -> 3 2 : AsnGluSerThrIleIleLysThrAspAlaLysSerHisSerAspTyrSerLeuGlnLeuAsnA : 23 :!!:!!!!!..!:!!! !:!!! !:!! !! :!! !||||||||||||||||||! !|||| AspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnA 486 : GACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATC : 423 24 : rgTrpPheLeuLysProIleGlyAlaTrpProTyrPheSerThrThrSerThrLeuGluLysVa : 44 ||||| :!!||| !||||||.!!|||||| ! |||||| |||!.!||||||!:! rgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSer------SerAsnLeuGluArgAs 422 : GATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCG------TCGAACCTCGAGAGAAA : 366 45 : lIleSerValSerLeuIleIleLeuCysTyrValValIleLeuPheSerIleIleProCysVal : 65 !|||||| !! !|||! !:!::!!||||||..!!.!|||||||||||||||||||||||| ! nIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSer 365 : CATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCG : 303 66 : AlaHisLeuIlePheGluAspAspSerPheTyrArgLysValLysValPheGlyProLeuGlyH : 87 !||||||!!:.!.||| ! ! !!!||||||! !|||||||||:!!.!!|||||||||.!!| LeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyProLeuSerH 302 : TTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCC : 237 88 : isTrpPheIleGlyGlyIleAsnTyrThrAsnLeuLeuPheArgSerArgAsnIleSerAspCy : 108 ||||| ! .!! !! !|||!:!||||||! ||||||.!.||| !!!:!!.!||| ! !!! isTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPh 236 : ACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTT : 174 109 : sValGluHisIleGluThrAspTrpGlnIleValThrLysGluLysGlnGlnGlnValMetLeu : 129 !|||.!.|||!!:||||||||||||::!! ..!|||::::::::::::::::::||||||||| eValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeu 173 : TGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGCTG : 111 130 : LysHisAlaLysPheGlyArgTyrValSerAlaIleCysAlaIlePheValHisSerGlyIleM : 151 |||:!!|||||||||.!!||||||!.!:!! !.!!||||||||||||:!!|||.!!||||||: LysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleL 110 : AAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTATAC : 45 152 : etSerTyrCysIleValSerAlaSerSerThrGlnIleIle : 164 !:.!!||||||:!!:!!!!!||||||!!!|||..!:!!:!! euGlyTyrCysValMetThrAlaSerThrThrMetValVal 44 : TTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTC : 4 vulgar: gi|350396509|ref|XP_003484577.1| 1 164 . LHQN01027980.1 486 3 - 435 M 35 105 G 2 0 M 126 378 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4 486 435 - . gene_id 1 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4 486 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4 486 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 4 486 435 - . alignment_id 1 ; Query gi|350396509|ref|XP_003484577.1| ; Align 487 2 105 ; Align 382 39 378 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 346 Query range: 300 -> 405 Target range: 4581 -> 4085 301 : GluTrpSerAspHisAspValArgSerLeuThrSerTyrPheIleIlePheAlaSerValTh : 321 ||||||!!!!!: !|||!.!!:!! !||| !!!!|||.!!:!!! !.!!!.!:!!|||.. GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValVa 4581 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTGT : 4521 322 : rPheAsnThrPheLeuLeuCysTyrIleGlyGluLeuLeuThrGluGln >>>> Target : 338 ! ||||||||||||:::|||||||||.!!!!: !|||||||||||| 9 lSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4520 : TtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt........... : 4468 339 : Intron 1 >>>> CysMetLysValGlyGluIleValTyrMetThrAsnTrpTyrIleL : 353 2 bp |||:!!||||||||||||:!:||||||||||||:!!|||||| !| ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrL 4467 : ..............agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATC : 4333 354 : euProArgLysArgIleLeuGluLeuIleLeuIleIleAlaArgSerSerValValIleGlu : 373 |||||!:!!:!|||||||||!!:|||||||||||||||.!!||||||!:!||||||:!!||| euProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGlu 4332 : TGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAA : 4273 374 : IleThrAlaGlyLysLeuIleHisMetSerIleHisThrPheGlyAsp >>>> Target : 390 |||||||||||||||:::...|||||||||:!!:!!|||||||||||| 89 IleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4272 : ATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt............ : 4220 391 : Intron 2 >>>> ValMetArgLeuAlaPheAlaTyrLeuAsnIleLeuCysGlnMetTh : 405 bp |||:!:!:! !!.!|||||||||||||||!!:||||||||||||:! ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMetSe 4219 : .............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAAATGTC : 4088 406 : r : 405 ! r 4087 : C : 4086 vulgar: gi|350396509|ref|XP_003484577.1| 300 405 . LHQN01027980.1 4581 4085 - 346 M 37 111 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4086 4581 346 - . gene_id 2 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4581 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4581 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4223 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 2 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 2 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 1 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4086 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4086 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4086 4581 346 - . alignment_id 2 ; Query gi|350396509|ref|XP_003484577.1| ; Align 4582 301 111 ; Align 4379 338 156 ; Align 4134 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 336 -> 390 Target range: 1990 -> 1822 337 : GlnCysMetLysValGlyGluIleValTyrMetThrAsnTrpTyrIleLeuProArgLysAr : 357 :!! !! |||||||||! !! !||||||||||||.!.|||||| ||| !!!:!|||! GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysTh 1990 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAAC : 1930 358 : gIleLeuGluLeuIleLeuIleIleAlaArgSerSerValValIleGluIleThrAlaGlyL : 378 ! !|||! !!!:!!:!!||||||:!!|||||||||:!!||||||:!!||||||||||||| rAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyL 1929 : TGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAA : 1867 379 : ysLeuIleHis<-><->MetSerIleHisThrPheGlyAspVal : 390 ||!!!:!!:!! !|||:!! ||||||||||||||| ysPheValTyr***ThrSerSerValAlaThrPheGlyAspVal 1866 : AATTCGTATACTGAACATCGTCTGTCGCAACATTTGGCGATGTG : 1823 vulgar: gi|350396509|ref|XP_003484577.1| 336 390 . LHQN01027980.1 1990 1822 - 126 M 45 135 G 0 6 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1823 1990 126 - . gene_id 3 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1823 1990 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1823 1990 . - . insertions 6 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1823 1990 126 - . alignment_id 3 ; Query gi|350396509|ref|XP_003484577.1| ; Align 1991 337 135 ; Align 1850 382 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396456|ref|XP_003484556.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 341 -> 388 Target range: 4345 -> 4204 342 : AsnTrpTyrArgPheProMetLysLysAlaArgAsnLeuIleLeuIleIleIleMetSerAs : 362 :!!|||||| !.!.|||..!!:!!:! !! !:!!|||||||||||||||! ! ||||| AspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAs 4345 : GATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAA : 4285 363 : nTyrProIleLysLeuThrAlaGlyLysIleValAspIleSerLeuAlaThrPheThrAspI : 383 | !:!!:!!:!!||||||||||||||| :::|||||| !|||||| !|||: nValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspV 4284 : CGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATG : 4222 384 : leIleLysAlaSerVal : 388 !!! !:!!.!!!:!:!! alSerGluThrAsnLeu 4221 : TAAGTGAAACTAATCTT : 4205 vulgar: gi|350396456|ref|XP_003484556.1| 341 388 . LHQN01027980.1 4345 4204 - 105 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4205 4345 105 - . gene_id 1 ; sequence gi|350396456|ref|XP_003484556.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4205 4345 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4205 4345 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4205 4345 105 - . alignment_id 1 ; Query gi|350396456|ref|XP_003484556.1| ; Align 4346 342 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396456|ref|XP_003484556.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 140 Query range: 21 -> 235 Target range: 1043 -> 401 22 : MetLysLeuIleGlyAlaTrpProLysProThrAlaThrSerThrPheSerLysAlaIleLy : 42 |||||| !|||||||||||||||:!! :!!:!!|||!.!.!!..!!:! !|||.. MetLysSerIleGlyAlaTrpProGln------SerSerSerAsnLeuGluArgIleIleSe 1043 : ATGAAAAGCATAGGCGCATGGCCACAG------TCCTCGTCGAATCTCGAGAGAATCATCTC : 989 43 : sTrpGlyLeuIleValSerAlaTyrPheLeuGlnLeuLeuValPheValProGlyValLeuT : 63 . ! !|||! !|||! !..!||| ! ! !|||!!!..!.!.:!!||| !! !|||: rArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIleProCysSerLeuH 988 : TCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATCCCTTGTTCGCTGC : 926 64 : yrLeuPheLeuLysGluLysAsnGlyLysLysArgIleHisIleMetIleProHisIleAsn : 83 !!:!!.!.|||:!!:!!:!!!.! ! ! ! !!:!:!: ! |||:!: !||| ! !:!! isValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGlyProLeuSerHis 925 : ACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCAC : 866 84 : GlyPheSerGlnLeuCysLysTyrThrIleLeuLeuArgArgThrAsnGluPheSerLysIl : 104 !! ! ! ! :!! !!..||||||!!:||||||! !||| !!!. .!. !! ! .! TrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPh 865 : TGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTT : 803 105 : eLeuAspGlnLeuSerAspAspTrp<->ValAspAlaThrGluAspSerArgHisIlePheA : 124 !!!!:!!!!.:!!..! !|||||| ..! ::::::...:::...|||... ePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLysLysGluIleMetL 802 : TTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaagaaagaaataatgc : 740 125 : rgMetArgAlaAsnIleGlyHisArgMetValLeuThrValAlaIleThrMetTyrThrThr : 144 !! ! !|||!!..!!.!!!.. ! !!.!:!!:!! !.!!||| !!!::!! ! ! euLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGly 739 : TGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGT : 680 145 : GlyLeuPheTyrArgIleIleIleProLeuSerArgGlyArgIleValLeuProAsnAsnTh : 165 !||| ||| !!:!!!!:! ! !!!!!!!!! ! ! !:!!|||:!! !|||.!.|| IleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValValGlyAsnGluTh 679 : ATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTGGAAACGAGAC : 617 166 : r<->ThrMetArgValLeuProCysProValTyrPhePhePhePheAsnGluGlnSerThrP : 185 | ! !:!!||||||||||||! |||:!!||| .!!.!! ! .!.!!!!.! rMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnT 616 : TATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATA : 554 186 : roTyrTyrGluIleIlePheValLeuGlnIleMetGlyGlyPheLeuAsnTyrThrIleLeu : 205 !! !!||||||:!!.!!:!!! !|||.!!:!:..!||||||:!! !!|||! ! ! hrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAsnThrSerAla 553 : CTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAACACCAGTGCG : 494 206 : CysSerThrMetGlyValCysLeuMetLeuCysLeuHisLeuSerSerLeuLeuArgIleLe : 226 !|||..!!!:.!!:!! ! ||| ! !||| !|||.!!! !||| !!:!::! IleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuGlyValVa 493 : ATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGGGCGTGGT : 431 227 : uMetAsnLysMetIleGluLeuThrSer : 235 !||| ..!!!: !!!:!!!..!||| lMetLeuSerIleGluAspPheValSer 430 : TATGTTGTCGATCGAAGATTTTGTGAGT : 402 vulgar: gi|350396456|ref|XP_003484556.1| 21 235 . LHQN01028641.1 1043 401 - 140 M 9 27 G 2 0 M 80 240 G 0 3 M 53 159 G 0 3 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 402 1043 140 - . gene_id 1 ; sequence gi|350396456|ref|XP_003484556.1| ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 402 1043 . - . LHQN01028641.1 exonerate:protein2genome:local exon 402 1043 . - . insertions 6 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local similarity 402 1043 140 - . alignment_id 1 ; Query gi|350396456|ref|XP_003484556.1| ; Align 1044 22 27 ; Align 1017 33 240 ; Align 774 113 159 ; Align 612 166 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 748 Query range: 1 -> 298 Target range: 1115 -> 162 2 : AsnGluSerThrIleIleLysThrAspAlaLysSerHisSerAspTyrSerLeuGlnLeuAs : 22 :!!:!!!!!..!:!!! !:!!! !:!! !! :!! !||||||||||||||||||! !|| AspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAs 1115 : GACAAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTGGAA : 1055 23 : nArgTrpPheLeuLysProIleGlyAlaTrpProTyrPheSerThrThrSerThrLeuGluL : 43 ||||||| :!!||| !||||||||||||||| ..!:!!:!!|||!.!||||||! nArgTrpAlaMetLysSerIleGlyAlaTrpPro------GlnSerSerSerAsnLeuGluA 1054 : TCGATGGGCGATGAAAAGCATAGGCGCATGGCCA------CAGTCCTCGTCGAATCTCGAGA : 998 44 : ysValIleSerValSerLeuIleIleLeuCysTyrValValIleLeuPheSerIleIlePro : 63 :!:!!|||||| !! !|||! !:!::!!||||||..!!.!:!!||||||!!!||||||||| rgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIlePro 997 : GAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATCCCT : 938 64 : CysValAlaHisLeuIlePheGluAspAspSerPheTyrArgLysValLysValPheGlyPr : 84 ||| ! !|||:!!!!:.!.||| ! !!:!!!||||||! !|||||||||:!!.!!||||| CysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGlyPr 937 : TGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGGTCC : 875 85 : oLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrAsnLeuLeuPheArgSerArgAsnI : 105 ||||.!!|||||| ! .!! !! !|||!:!||||||! ||||||.!.||| !!!:!!.!| oLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrI 874 : GTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCA : 812 106 : leSerAspCysValGluHisIleGluThrAspTrpGlnIleValThrLysGluLysGlnGln : 125 || !! !!! ! !!.!.|||!!:||||||||||||::!! ..!! ::::::::::::::: leArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLysLys 811 : TACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaagaaa : 752 126 : GlnValMetLeuLysHisAlaLysPheGlyArgTyrValSerAlaIleCysAlaIlePheVa : 146 ::::::|||||||||:!!|||||||||.!!||||||!.!:!! ! !|||.!!||||||:! GluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIl 751 : gaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCAT : 689 147 : lHisSerGlyIleMetSerTyrCysIleValSerAlaSerSerThrGlnIleIleLysValG : 167 !|||.!!||||||:!:.!!||||||:!!:!!!!!|||! !!!!|||..!:!!:!! !|||| eHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValValG 688 : ACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTG : 626 168 : lyAsnGluThrArgMetMetArgSerLeuProLeuGlyValTyrAsnArgMetIleProVal : 187 |||||||||||! !!!::!!||| !||||||||| !:!!|||!!. !!:!::!!|||||| lyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProVal 625 : GAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTC : 566 188 : AspThrSerProAlaAsnGluIleValLeuValMetGlnPheLeuSerAlaPheIleThrAs : 208 ||||||!:! !! !|||||||||||||||:!! ||||||||||||!.!||||||.!!:! AspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAs 565 : GATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAA : 503 209 : pSerSerGlyIleGlyPheTyrThrLeuAlaSerValLeuAlaAlaHisAlaCysGlyGlnL : 229 !!!!|||!.!|||.!! !! !:!|||.!!|||!.!|||.!!:!!||||||! !||||||| nThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnL 502 : CACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGT : 440 230 : euSerValLeuThrIleTrpIleSerAspTyrValAsnGluAlaGlyAsnArgLysGluAsp : 249 ||.!!|||:!!! !:!:! !|||..!|||!:!|||!:!!!:||| !!..!||| !:!!||| euGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLysAsp 439 : TGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAGGAC : 380 250 : AlaSerPheArgLysIleGlyThrIleValGluHisHisLeuArgThrLeu{As} >>>> : 267 ! ! !||| !:!!||| !|||||||||||| ! |||||||||..!|||{:!} AspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeu{As}++ 379 : GATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG{AA}gt..... : 322 268 : Target Intron 1 >>>> {p}PheIleAlaArgIleGluGluValMetSerTrpValC : 280 68 bp {!}||||||:!!|||||||||! !:!!!!:!:! !.!| ++{n}PheIleSerArgIleGluAlaMetIleAsnLysAlaC 321 : ....................ag{C}TTCATATCGCGCATAGAGGCAATGATAAACAAAGCGT : 219 281 : ysMetThrGluLeuPheArgCysValLeuAlaIleCysMetValGlyTyrTyrIle : 298 ||.!. !|||||| ||||||..!:!!|||||||||:!::!!|||||||||||| ysPheLeuGluLeuThrArgCysThrIleAlaIleCysValLeuGlyTyrTyrIle 218 : GTTTCCTGGAGTTAACGAGGTGCACGATAGCTATATGCGTACTTGGATATTATATA : 163 vulgar: gi|350396509|ref|XP_003484577.1| 1 298 . LHQN01028641.1 1115 162 - 748 M 32 96 G 2 0 M 231 693 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 163 1115 748 - . gene_id 1 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1115 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1115 . - . insertions 0 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 163 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 163 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 163 1115 748 - . alignment_id 1 ; Query gi|350396509|ref|XP_003484577.1| ; Align 1116 2 96 ; Align 1020 36 693 ; Align 256 268 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 660 Query range: 1 -> 296 Target range: 1118 -> 162 2 : ThrAsnGlnProValThrIleGlyAlaSerAlaLysAlaAsnSerAspTyrGlyLeuGlnLe : 22 !.!:!!:!! !!|||..!! !! ! !!:! !! |||!:!|||||||||.!!||||||! AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTr 1118 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTG : 1058 23 : uAsnArgTrpPheLeuLysProIleGlyValTrpProSerPheProSerThrThrArgPheG : 43 !||||||||| :!!||| !||||||!.!||||||..! |||:!!:!!!.!.!!| pAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGln------SerSerSerAsnLeuG 1057 : GAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAG------TCCTCGTCGAATCTCG : 1001 44 : luLysIleValSerIleThrLeuAsnValIleCysTyrSerSerIleIleLeuThrThrIle : 63 ||!:!|||:!!||| !! !||||||||||||||||||!!!:!!:!!:!!!!!|||! !||| luArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIle 1000 : AGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATC : 941 64 : ProCysLeuValArgMetPheLeuGluAspGluSerIleTyrLeuLysLeuLysSerLeuGl : 84 ||||||! !:!!!.!:!:.!.|||||| ! |||!!!.!!||| !|||:!!|||! !||||| ProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGl 940 : CCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGG : 878 85 : yProValSerHisTrpIleValSerGlyAlaAsnTyrThrThrLeuLeuLeuArgSerLysA : 105 ||||:!!|||||||||:!: !!!!! ! !!:!||||||! !|||||||||||| !!||| yProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysT 877 : TCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAA : 815 106 : spIleArgGlnCysMetGluHisMetGluAlaAspTrpGlnThrValThrArgGluLysAsp : 125 !||||||!!.! !.!..!.|||||||||.!!||||||::!|||..!! |||:::::: hrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLys 814 : CCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaag : 755 126 : GlnTrpValMetLeuLysAsnAlaLysPheGlyArgTyrValAlaAlaSerCysAlaIlePh : 146 ::: :::||||||||| !!|||||||||.!!||||||!.!||| !||||||.!!||||| LysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePh 754 : aaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTT : 692 147 : eMetGlnSerGlyIleMetCysPheIlePheValAlaAlaMetAspThrValGluIleGlnI : 167 |!!:!!..!!||||||:!: ! !:! ! !!:!!.!!|||.!. !|||:!!! :!! !: eIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValV 691 : CATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGG : 629 168 : leGlyAsnGluThrArgIleLeuHisValLeuProCysAlaValTyrLysLysLeuIleAsn : 187 !!||||||||||||! !||||||!.!|||||||||! !!:!!|||||| !|||:!! alGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuPro 628 : TTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCA : 569 188 : ValAspGluSerProThrAsnGluIleMetLeuPheLeuGlnAlaTrpCysThrMetIleAl : 208 |||||| !!:! !!! !|||||||||:!:|||!!.! !||| ! ! ! !.!.||||| ValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAl 568 : GTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGC : 506 209 : aAsnSerSerThrValGlyMetPheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGlyG : 229 ||||!!!|||.!!:!!.!!:!:.!.||||||.!!::!!.!|||.!!:!!||||||! !|||| aAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyG 505 : GAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCC : 443 230 : lnLeuAsnValValMetValTrpIleThrGluPheValAsnGluProLys<-><-><->Lys : 246 |||||..!|||||||||:!!! !||| !!!:||||||!:!!!: !!!:! ||| lnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLys 442 : AGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAG : 383 247 : ThrAspGlyProAsnSerIleGlyValIleValGluArgHisLeuArgThrLeu{As} >> : 265 !||| ! !:!!..!||| !..!|||||||||!:!|||||||||..!|||{||} AspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeu{As}++ 382 : GACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG{AA}gt.. : 322 266 : >> Target Intron 1 >>>> {n}PheIleGlyTyrIleGluAsnLeuMetAsnArgI : 277 68 bp {|}||||||..! !|||||| :!!!!:|||!:! ++{n}PheIleSerArgIleGluAlaMetIleAsnLysA 321 : .......................ag{C}TTCATATCGCGCATAGAGGCAATGATAAACAAAG : 222 278 : leTyrPheLeuGluIlePheArgCysThrMetAspIleCysIleLeuGlyTyrTyrIle : 296 ! !|||||||||:!! |||||||||!!:! !||||||:!!||||||||||||||| laCysPheLeuGluLeuThrArgCysThrIleAlaIleCysValLeuGlyTyrTyrIle 221 : CGTGTTTCCTGGAGTTAACGAGGTGCACGATAGCTATATGCGTACTTGGATATTATATA : 163 vulgar: gi|350396511|ref|XP_003484578.1| 1 296 . LHQN01028641.1 1118 162 - 660 M 34 102 G 2 0 M 208 624 G 0 9 M 19 57 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 163 1118 660 - . gene_id 1 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1118 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1118 . - . insertions 9 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 163 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 163 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 163 1118 660 - . alignment_id 1 ; Query gi|350396511|ref|XP_003484578.1| ; Align 1119 2 102 ; Align 1017 38 624 ; Align 384 246 57 ; Align 256 266 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928873|ref|XP_012248903.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 147 Query range: 88 -> 177 Target range: 5687 -> 5420 89 : ArgThrPheValLeuSerCysMetSerGlyPheIleValIleProLeuTyrProAlaPheLe : 109 !:!..! !:!!! !! !||| :!! !|||!!: !:!:|||!!! !! !!.!!|| LysValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLe 5687 : AAAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCT : 5627 110 : uAspIleIleIleProLeuAsnGluThrArgGlnArgHisGlnMetPheArgLeuThrTyrP : 130 |||||||:!!!!:|||||||||||||||||| !||| :!:!:!! ! ! !|||| uAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrP 5626 : GGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATT : 5564 131 : heLeuAspGluAsnArgTyrPheTyrProIleTyrPheHisSerLeuTrpCysSerPheVal : 150 ||:!!||||||:!!!:!||| !||| !||| |||! !! ! ! ! :!! heValAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMet 5563 : TCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATG : 5504 151 : ThrValMetIleAlaValThrIleAspSerLeuTyrIleGlnIleValHisHisAspCysAl : 171 !:!! :!! ! !.!! !|||:!! !|||:!: ! !|||!!.|||! !|||!. LeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGl 5503 : CTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGG : 5441 172 : aIlePheAlaIleCysGly : 177 !:!:!!.||||||...||| yLeuLeuAlaIleAlaGly 5440 : ATTGTTGGCCATTGCAGGG : 5421 vulgar: gi|815928873|ref|XP_012248903.1| 88 177 . LHQN01028732.1 5687 5420 - 147 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5687 147 - . gene_id 1 ; sequence gi|815928873|ref|XP_012248903.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5687 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5687 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5687 147 - . alignment_id 1 ; Query gi|815928873|ref|XP_012248903.1| ; Align 5688 89 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: LHQN01028838.1 Habropoda laboriosa contig28838, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 266 -> 298 Target range: 644 -> 548 267 : AspPheIleAlaArgIleGluGluValMetSerTrpValCysMetThrGluLeuPheArgCysV : 288 ..!||||||:!!|||||||||! !:!!|||!:! !.!|||.!. !|||||| ||||||: SerPheIleSerArgIleGluAlaMetMetAsnLysAlaCysPheLeuGluLeuThrArgCysM 644 : AGCTTCATATCGCGCATAGAGGCAATGATGAACAAAGCGTGTTTCCTGGAGTTAACGAGGTGCA : 581 289 : alLeuAlaIleCysMetValGlyTyrTyrIle : 298 !!:!!|||:!!||| :!!|||||||||||| etIleAlaValCysAlaLeuGlyTyrTyrIle 580 : TGATAGCTGTATGCGCACTTGGATATTATATA : 549 vulgar: gi|350396509|ref|XP_003484577.1| 266 298 . LHQN01028838.1 644 548 - 100 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028838.1 exonerate:protein2genome:local gene 549 644 100 - . gene_id 1 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation . LHQN01028838.1 exonerate:protein2genome:local cds 549 644 . - . LHQN01028838.1 exonerate:protein2genome:local exon 549 644 . - . insertions 0 ; deletions 0 LHQN01028838.1 exonerate:protein2genome:local similarity 549 644 100 - . alignment_id 1 ; Query gi|350396509|ref|XP_003484577.1| ; Align 645 267 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 360 Query range: 1 -> 165 Target range: 381 -> 867 2 : ThrAsnGlnProValThrIleGlyAlaSerAlaLysAlaAsnSerAspTyrGlyLeuGlnLeuA : 23 !.!:!!:!! !!|||..!! !! ! !!:! !! |||!:!|||||||||.!!||||||! !| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpA 382 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGA : 445 24 : snArgTrpPheLeuLysProIleGlyValTrpProSerPheProSerThrThrArgPheGluLy : 44 |||||||| :!!||| !||||||..!||||||..!||| !!||| !.!.!!|||!: snArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSer------AsnLeuGluAr 446 : ATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCG------AACCTCGAGAG : 502 45 : sIleValSerIleThrLeuAsnValIleCysTyrSerSerIleIleLeuThrThrIleProCys : 65 !! !:!!||| !! !||||||||||||||||||!!!:!!|||:!!!!!:!!! !||||||||| gAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCys 503 : AAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGT : 565 66 : LeuValArgMetPheLeuGluAspGluSerIleTyrLeuLysLeuLysSerLeuGlyProValS : 87 ! !:!!!.!:!:.!.|||||| ! ! !!!!.!!||| !|||:!!|||! !|||||| !!:!!| SerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuS 566 : TCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGA : 631 88 : erHisTrpIleValSerGlyAlaAsnTyrThrThrLeuLeuLeuArgSerLysAspIleArgGl : 108 ||||||||:!: !!!!! ! !!:!||||||! !|||||||||||| !!||| !|||!.!!! erHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHi 632 : GCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCA : 694 109 : nCysMetGluHisMetGluAlaAspTrpGlnThrValThrArgGluLysAspGlnTrpValMet : 129 .! !:!:.!.|||||||||.!!||||||::!|||..!||||||:::::: ::: |||||| sPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMet 695 : CTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATG : 757 130 : LeuLysAsnAlaLysPheGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnSerGlyI : 151 |||||| !!|||||||||.!!||||||!.!||| !! !||||||||||||!!:!!..!!|||| LeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyI 758 : TTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACACGGTGGTA : 823 152 : leMetCysPheIlePheValAlaAlaMetAspThrValGluIle : 165 ||:!: ! !:! ! !!:!!.!!||| !|||:!!! :!! leLeuGlyTyrCysValMetThrAlaSerThrThrMetValVal 824 : TACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTC : 867 vulgar: gi|350396511|ref|XP_003484578.1| 1 165 . LHQN01028951.1 381 867 + 360 M 37 111 G 2 0 M 125 375 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 382 867 360 + . gene_id 1 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 382 867 . + . LHQN01028951.1 exonerate:protein2genome:local exon 382 867 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 382 867 360 + . alignment_id 1 ; Query gi|350396511|ref|XP_003484578.1| ; Align 382 2 111 ; Align 493 41 375 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 427 Query range: 1 -> 164 Target range: 384 -> 867 2 : AsnGluSerThrIleIleLysThrAspAlaLysSerHisSerAspTyrSerLeuGlnLeuAsnA : 23 :!!:!!!!!..!:!!! !:!!! !:!! !! :!! !||||||||||||||||||! !|||| AspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnA 385 : GACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATC : 448 24 : rgTrpPheLeuLysProIleGlyAlaTrpProTyrPheSerThrThrSerThrLeuGluLysVa : 44 ||||| :!!||| !||||||.!!|||||| ! |||||| |||!.!||||||!:! rgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSer------SerAsnLeuGluArgAs 449 : GATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCG------TCGAACCTCGAGAGAAA : 505 45 : lIleSerValSerLeuIleIleLeuCysTyrValValIleLeuPheSerIleIleProCysVal : 65 !|||||| !! !|||! !:!::!!||||||..!!.!|||||||||||||||||||||||| ! nIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSer 506 : CATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCG : 568 66 : AlaHisLeuIlePheGluAspAspSerPheTyrArgLysValLysValPheGlyProLeuGlyH : 87 !||||||!!:.!.||| ! ! !!!||||||! !|||||||||:!!.!!||| !!|||.!!| LeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuSerH 569 : TTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCC : 634 88 : isTrpPheIleGlyGlyIleAsnTyrThrAsnLeuLeuPheArgSerArgAsnIleSerAspCy : 108 ||||| ! .!! !! !|||!:!||||||! ||||||.!.||| !!!:!!.!||| ! !!! isTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPh 635 : ACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTT : 697 109 : sValGluHisIleGluThrAspTrpGlnIleValThrLysGluLysGlnGlnGlnValMetLeu : 129 !|||.!.|||!!:||||||||||||::!! ..!|||::::::::::::::::::||||||||| eValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeu 698 : TGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTG : 760 130 : LysHisAlaLysPheGlyArgTyrValSerAlaIleCysAlaIlePheValHisSerGlyIleM : 151 |||:!!|||||||||.!!||||||!.!:!! !.!!||||||||||||:!!|||.!!||||||: LysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleL 761 : AAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACACGGTGGTATAC : 826 152 : etSerTyrCysIleValSerAlaSerSerThrGlnIleIle : 164 !:.!!||||||:!!:!!!!!||||||!!!|||..!:!!:!! euGlyTyrCysValMetThrAlaSerThrThrMetValVal 827 : TTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTC : 867 vulgar: gi|350396509|ref|XP_003484577.1| 1 164 . LHQN01028951.1 384 867 + 427 M 35 105 G 2 0 M 126 378 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 385 867 427 + . gene_id 1 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 385 867 . + . LHQN01028951.1 exonerate:protein2genome:local exon 385 867 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 385 867 427 + . alignment_id 1 ; Query gi|350396509|ref|XP_003484577.1| ; Align 385 2 105 ; Align 490 39 378 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 335 -> 381 Target range: 212 -> 74 336 : GluGlnCysMetLysValGlyGluIleValTyrMetThrAsnTrpTyrIleLeuProArgLysA : 357 |||:!! !! |||||||||! !! !||||||||||||.!.|||||| ||| !!!:!|||! GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 358 : rgIleLeuGluLeuIleLeuIleIleAlaArgSerSerValValIleGluIleThrAlaGlyLy : 378 ! !|||! !!!:!!:!!||||||:!!|||||||||:!!||||||:!!|||||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 379 : sLeuIleHis : 381 |!!!:!!:!! sPheValTyr 85 : ATTCGTATAC : 75 vulgar: gi|350396509|ref|XP_003484577.1| 335 381 . LHQN01029187.1 212 74 - 126 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 75 212 126 - . gene_id 1 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 75 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 75 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 75 212 126 - . alignment_id 1 ; Query gi|350396509|ref|XP_003484577.1| ; Align 213 336 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 333 -> 379 Target range: 212 -> 74 334 : GluGlnSerLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAspLysT : 355 |||:!!!!!! |||||||||! ! !||||||||||||.!.|||||| ||| !!.!.|||| GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 356 : hrIleLeuAspLeuIleLeuIleIleAlaArgSerGlyValValValGlnIleThrAlaGlyLy : 376 || !|||! !!!!:!!:!!||||||:!!||||||.!!:!!|||:!!:!!|||||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 377 : sMetValHis : 379 |.!.|||:!! sPheValTyr 85 : ATTCGTATAC : 75 vulgar: gi|350396511|ref|XP_003484578.1| 333 379 . LHQN01029187.1 212 74 - 132 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 75 212 132 - . gene_id 1 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 75 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 75 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 75 212 132 - . alignment_id 1 ; Query gi|350396511|ref|XP_003484578.1| ; Align 213 334 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: LHQN01036086.1 Habropoda laboriosa contig36086, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 91 -> 155 Target range: 0 -> 192 92 : PheIleHisLysLysLysPheLeuTyrLeuIleValTyrMetGlnLysAsnPheTrpHisPheA : 113 !:!! |||!:!! !:!!|||! ! |||||| !!:!! !|||:!!!!.||||||||||||| TyrLysHisArgIleGluPheTyrGlyLeuIleArgPheThrGlnGluLysPheTrpHisPheA 1 : TACAAGCACAGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAGAGAAATTCTGGCATTTCA : 64 114 : snTyrAsnGlnTyrLysLysSerValLeuAlaAspAlaLysArgMetCysIleTyrPheValCy : 134 ||||||||..! :!!|||! !:!!|||:!!!!:..!|||!:!!!:|||! ! !|||:!! snTyrAsnSerArgGluLysLeuIleLeuSerGluCysLysLysIleCysThrValPheIleVa 65 : ACTATAATTCACGGGAGAAGTTAATTTTATCCGAGTGCAAGAAGATATGTACCGTTTTCATCGT : 127 135 : sValPheSerPheLeuSerGlnSerThrIlePheSerTyrIlePheMetProLeuIleSerAsn : 155 !!.!|||||||||! !!!!|||.!!||| ! !.!!|||:!! ! ! |||:!!:!!...||| lAlaPheSerPheCysThrGlnGlyThrCysAlaGlyTyrValValThrProIleLeuGlyAsn 128 : TGCCTTCAGCTTCTGTACACAGGGCACGTGTGCTGGTTACGTAGTGACACCTATTTTAggtaat : 190 vulgar: gi|815927557|ref|XP_003494290.2| 91 155 . LHQN01036086.1 0 192 + 156 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01036086.1 exonerate:protein2genome:local gene 1 192 156 + . gene_id 1 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation . LHQN01036086.1 exonerate:protein2genome:local cds 1 192 . + . LHQN01036086.1 exonerate:protein2genome:local exon 1 192 . + . insertions 0 ; deletions 0 LHQN01036086.1 exonerate:protein2genome:local similarity 1 192 156 + . alignment_id 1 ; Query gi|815927557|ref|XP_003494290.2| ; Align 1 92 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: LHQN01036086.1 Habropoda laboriosa contig36086, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 92 -> 152 Target range: 15 -> 195 93 : GluLeuLeuAspIleIleAspTyrAlaLysIleAsnPheTrpHisLeuAsnTyrAspSerHisG : 114 |||!!!! !! :!!||| !:!.!!:!! !!.|||||||||!!!||||||:!!|||!..| GluPheTyrGlyLeuIleArgPheThrGlnGluLysPheTrpHisPheAsnTyrAsnSerArgG 16 : GAATTCTACGGGTTAATCAGGTTCACGCAAGAGAAATTCTGGCATTTCAACTATAATTCACGGG : 79 115 : luGlnMetIleValAspAsnCysArgArgThrCysThrIlePheValCysValPheThrPhePh : 135 ||:!!:!:|||:!!..!.!.|||!:!!:!! !||||||:!!|||:!! !!.!|||!:!|||! luLysLeuIleLeuSerGluCysLysLysIleCysThrValPheIleValAlaPheSerPheCy 80 : AGAAGTTAATTTTATCCGAGTGCAAGAAGATATGTACCGTTTTCATCGTTGCCTTCAGCTTCTG : 142 136 : eAlaGlnGlyThrValIleGlyPheIleAlaArgProLeuLeuIleAsnTyr : 152 !.!!||||||||| ! !|||!:!:!!!.!! !|||:!!||| |||||| sThrGlnGlyThrCysAlaGlyTyrValValThrProIleLeuGlyAsnTyr 143 : TACACAGGGCACGTGTGCTGGTTACGTAGTGACACCTATTTTAggtaattac : 195 vulgar: gi|350397203|ref|XP_003484804.1| 92 152 . LHQN01036086.1 15 195 + 159 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01036086.1 exonerate:protein2genome:local gene 16 195 159 + . gene_id 1 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation . LHQN01036086.1 exonerate:protein2genome:local cds 16 195 . + . LHQN01036086.1 exonerate:protein2genome:local exon 16 195 . + . insertions 0 ; deletions 0 LHQN01036086.1 exonerate:protein2genome:local similarity 16 195 159 + . alignment_id 1 ; Query gi|350397203|ref|XP_003484804.1| ; Align 16 93 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: LHQN01036086.1 Habropoda laboriosa contig36086, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 107 -> 171 Target range: 0 -> 192 108 : PheIleHisLysLysGluPheIleGluLeuLeuValTyrThrHisLysAsnPheTrpHisThrA : 129 !:!! |||!:!! !|||||| !! !|||:!! !!:!|||!!.:!!!!.||||||||| !| TyrLysHisArgIleGluPheTyrGlyLeuIleArgPheThrGlnGluLysPheTrpHisPheA 1 : TACAAGCACAGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAGAGAAATTCTGGCATTTCA : 64 130 : snTyrSerTyrAsnGluLeuLeuLeuLeuGlnAsnCysArgLysIleSerIleValCysIleSe : 150 |||||!:!! ...||| !|||:!!|||....!.|||!:!||||||!!!! !|||! !||| snTyrAsnSerArgGluLysLeuIleLeuSerGluCysLysLysIleCysThrValPheIleVa 65 : ACTATAATTCACGGGAGAAGTTAATTTTATCCGAGTGCAAGAAGATATGTACCGTTTTCATCGT : 127 151 : rLeuIleAsnValCysAlaGlnGlyThrValPheGlyTyrValLeuThrProIleValGluAsn : 171 ! !.!!!:! !!|||.!!||||||||| ! !|||||||||:!!|||||||||:!! ||| lAlaPheSerPheCysThrGlnGlyThrCysAlaGlyTyrValValThrProIleLeuGlyAsn 128 : TGCCTTCAGCTTCTGTACACAGGGCACGTGTGCTGGTTACGTAGTGACACCTATTTTAggtaat : 190 vulgar: gi|350397292|ref|XP_003484830.1| 107 171 . LHQN01036086.1 0 192 + 157 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01036086.1 exonerate:protein2genome:local gene 1 192 157 + . gene_id 1 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation . LHQN01036086.1 exonerate:protein2genome:local cds 1 192 . + . LHQN01036086.1 exonerate:protein2genome:local exon 1 192 . + . insertions 0 ; deletions 0 LHQN01036086.1 exonerate:protein2genome:local similarity 1 192 157 + . alignment_id 1 ; Query gi|350397292|ref|XP_003484830.1| ; Align 1 108 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: LHQN01040768.1 Habropoda laboriosa contig40768, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 298 -> 348 Target range: 75 -> 225 299 : LysLeuSerLeuSerTrpArgIleSerLeuValSerPheLeuThrThrAsnIleCysGlnLeuT : 320 :!!||||||!!!..!||||||:!!:!!|||!.!!!!|||! !! !|||..!:!: !!||||||| GluLeuSerPheGluTrpArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuT 76 : GAGTTATCATTTGAATGGCGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTAT : 139 321 : rpIlePheThrTyrSerCysAsnAlaLeuIleGluGluSerMetAsnThrAlaAsnAlaAlaTy : 341 ||!!:|||||||||||||||:!!..!:!!! ! !||||||:!!|||! !|||.!.:!!!.!|| rpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTy 140 : GGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATA : 202 342 : rAlaAlaProTrpIleTyrLeu : 348 ||||!.!||||||||| !!||| rAlaGlyProTrpIleAsnLeu 203 : CGCTGGACCATGGATAAATTTA : 225 vulgar: gi|815927557|ref|XP_003494290.2| 298 348 . LHQN01040768.1 75 225 + 151 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01040768.1 exonerate:protein2genome:local gene 76 225 151 + . gene_id 1 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation . LHQN01040768.1 exonerate:protein2genome:local cds 76 225 . + . LHQN01040768.1 exonerate:protein2genome:local exon 76 225 . + . insertions 0 ; deletions 0 LHQN01040768.1 exonerate:protein2genome:local similarity 76 225 151 + . alignment_id 1 ; Query gi|815927557|ref|XP_003494290.2| ; Align 76 299 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: LHQN01040768.1 Habropoda laboriosa contig40768, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 313 -> 347 Target range: 126 -> 228 314 : MetCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgAspSerAlaAsnValA : 335 :!! !!||||||! !||||||||||||||||||||||||:!!! !! !!!:||| !|||:!!| ValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleA 127 : GTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCG : 190 336 : laAsnAlaAlaTyrLysSerLeuTrpSerArgLeuPro : 347 ||.!.:!!!.!||| .!!! !|||! !!.!|||||| laGluSerValTyrAlaGlyProTrpIleAsnLeuPro 191 : CTGAATCTGTATACGCTGGACCATGGATAAATTTACCA : 228 vulgar: gi|350397203|ref|XP_003484804.1| 313 347 . LHQN01040768.1 126 228 + 100 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01040768.1 exonerate:protein2genome:local gene 127 228 100 + . gene_id 1 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation . LHQN01040768.1 exonerate:protein2genome:local cds 127 228 . + . LHQN01040768.1 exonerate:protein2genome:local exon 127 228 . + . insertions 0 ; deletions 0 LHQN01040768.1 exonerate:protein2genome:local similarity 127 228 100 + . alignment_id 1 ; Query gi|350397203|ref|XP_003484804.1| ; Align 127 314 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397295|ref|XP_003484831.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: LHQN01040768.1 Habropoda laboriosa contig40768, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 314 -> 348 Target range: 126 -> 228 315 : LeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleMetGlnGluSerThrSerValA : 336 :!! !!||||||! !|||||||||||||||||||||||||||! !|||||| !!:!:!!| ValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleA 127 : GTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCG : 190 337 : laLeuAlaValTyrLysGlyProTrpSerPheLeuPro : 348 || !:!!|||||| |||||||||! ! !|||||| laGluSerValTyrAlaGlyProTrpIleAsnLeuPro 191 : CTGAATCTGTATACGCTGGACCATGGATAAATTTACCA : 228 vulgar: gi|350397295|ref|XP_003484831.1| 314 348 . LHQN01040768.1 126 228 + 114 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01040768.1 exonerate:protein2genome:local gene 127 228 114 + . gene_id 1 ; sequence gi|350397295|ref|XP_003484831.1| ; gene_orientation . LHQN01040768.1 exonerate:protein2genome:local cds 127 228 . + . LHQN01040768.1 exonerate:protein2genome:local exon 127 228 . + . insertions 0 ; deletions 0 LHQN01040768.1 exonerate:protein2genome:local similarity 127 228 114 + . alignment_id 1 ; Query gi|350397295|ref|XP_003484831.1| ; Align 127 315 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: LHQN01040768.1 Habropoda laboriosa contig40768, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 336 -> 368 Target range: 129 -> 225 337 : SerGlnLeuLeuLeuPheThrTyrSerCysAspThrLeuIleArgGluSerThrAsnIleGlyT : 358 |||||||||! !:!!|||||||||||||||||| !:!!! !! !|||||| !||||||!.! SerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaG 130 : AGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTG : 193 359 : hrAlaValTyrSerGlyProTrpThrHisLeu : 368 !:!!||||||:!!|||||||||! !:!!||| luSerValTyrAlaGlyProTrpIleAsnLeu 194 : AATCTGTATACGCTGGACCATGGATAAATTTA : 225 vulgar: gi|350397292|ref|XP_003484830.1| 336 368 . LHQN01040768.1 129 225 + 107 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01040768.1 exonerate:protein2genome:local gene 130 225 107 + . gene_id 1 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation . LHQN01040768.1 exonerate:protein2genome:local cds 130 225 . + . LHQN01040768.1 exonerate:protein2genome:local exon 130 225 . + . insertions 0 ; deletions 0 LHQN01040768.1 exonerate:protein2genome:local similarity 130 225 107 + . alignment_id 1 ; Query gi|350397292|ref|XP_003484830.1| ; Align 130 337 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: LHQN01044749.1 Habropoda laboriosa contig44749, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 324 -> 368 Target range: 136 -> 4 325 : ArgLeuIlePheValPheHisIleValGlySerSerSerGlnLeuLeuLeuPheThrTyrSerC : 346 |||:!! !!!.!.!! ! !:!::!! !.!! !|||||||||! !:!!||||||||||||| ArgValAlaLeuAlaCysPheLeuMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerC 136 : CGCGTTGCTTTGGCGTGCTTCTTGATGACGGGCGTGAGTCAACTATGGATGTTCACGTATAGTT : 73 347 : ysAspThrLeuIleArgGluSerThrAsnIleGlyThrAlaValTyrSerGlyProTrpThrHi : 367 ||||| !|||! !! !|||||| !||||||!.! !:!!||||||:!!|||||||||! !:! ysAspCysLeuThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAs 72 : GCGATTGCCTAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAA : 10 368 : sLeu : 368 !||| nLeu 9 : TTTA : 5 vulgar: gi|350397292|ref|XP_003484830.1| 324 368 . LHQN01044749.1 136 4 - 110 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01044749.1 exonerate:protein2genome:local gene 5 136 110 - . gene_id 1 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation . LHQN01044749.1 exonerate:protein2genome:local cds 5 136 . - . LHQN01044749.1 exonerate:protein2genome:local exon 5 136 . - . insertions 0 ; deletions 0 LHQN01044749.1 exonerate:protein2genome:local similarity 5 136 110 - . alignment_id 1 ; Query gi|350397292|ref|XP_003484830.1| ; Align 137 325 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: LHQN01044749.1 Habropoda laboriosa contig44749, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 164 Query range: 292 -> 348 Target range: 172 -> 4 293 : TyrGlnAlaLeuLeuValLysLeuSerLeuSerTrpArgIleSerLeuValSerPheLeuThrT : 314 |||.!.!.! !! ! !|||||||||!!!..!||||||:!!:!!|||!.!!!!||||||! !| TyrAsnGlyThrGlnAsnLysLeuSerPheGluTrpArgValAlaLeuAlaCysPheLeuMetT 172 : TATAATGGCACACAGAATAAGTTATCATTTGAATGGCGCGTTGCTTTGGCGTGCTTCTTGATGA : 109 315 : hrAsnIleCysGlnLeuTrpIlePheThrTyrSerCysAsnAlaLeuIleGluGluSerMetAs : 335 ||..!:!: !!|||||||||!!:|||||||||||||||:!!..!|||! ! !||||||:!!|| hrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysLeuThrThrGluSerLeuAs 108 : CGGGCGTGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCCTAACAACAGAAAGCCTGAA : 46 336 : nThrAlaAsnAlaAlaTyrAlaAlaProTrpIleTyrLeu : 348 |! !|||.!.:!!!.!||||||!.!||||||||| !!||| nIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeu 45 : CATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTA : 5 vulgar: gi|815927557|ref|XP_003494290.2| 292 348 . LHQN01044749.1 172 4 - 164 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01044749.1 exonerate:protein2genome:local gene 5 172 164 - . gene_id 1 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation . LHQN01044749.1 exonerate:protein2genome:local cds 5 172 . - . LHQN01044749.1 exonerate:protein2genome:local exon 5 172 . - . insertions 0 ; deletions 0 LHQN01044749.1 exonerate:protein2genome:local similarity 5 172 164 - . alignment_id 1 ; Query gi|815927557|ref|XP_003494290.2| ; Align 173 293 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: LHQN01044749.1 Habropoda laboriosa contig44749, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 302 -> 347 Target range: 136 -> 1 303 : ArgPheThrPheAlaPheHisIleThrGlyCysMetCysGlnLeuLeuMetPheThrTyrSerC : 324 ||| !!.!!!!.|||! ! !:!:! ! ! !!:!! !!||||||! !|||||||||||||||| ArgValAlaLeuAlaCysPheLeuMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerC 136 : CGCGTTGCTTTGGCGTGCTTCTTGATGACGGGCGTGAGTCAACTATGGATGTTCACGTATAGTT : 73 325 : ysAspCysLeuIleArgAspSerAlaAsnValAlaAsnAlaAlaTyrLysSerLeuTrpSerAr : 345 |||||||||||! !! !!!:||| !|||:!!|||.!.:!!!.!||| .!!! !|||! !!. ysAspCysLeuThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAs 72 : GCGATTGCCTAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAA : 10 346 : gLeuPro : 347 !|||||| nLeuPro 9 : TTTACCA : 2 vulgar: gi|350397203|ref|XP_003484804.1| 302 347 . LHQN01044749.1 136 1 - 103 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01044749.1 exonerate:protein2genome:local gene 2 136 103 - . gene_id 1 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation . LHQN01044749.1 exonerate:protein2genome:local cds 2 136 . - . LHQN01044749.1 exonerate:protein2genome:local exon 2 136 . - . insertions 0 ; deletions 0 LHQN01044749.1 exonerate:protein2genome:local similarity 2 136 103 - . alignment_id 1 ; Query gi|350397203|ref|XP_003484804.1| ; Align 137 303 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397295|ref|XP_003484831.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: LHQN01044749.1 Habropoda laboriosa contig44749, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 310 -> 348 Target range: 115 -> 1 311 : LeuIleAlaCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleMetGlnGluS : 332 |||!!:.!! !!:!! !!||||||! !||||||||||||||||||||||||:!!! !|||| LeuMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysLeuThrThrGluS 115 : TTGATGACGGGCGTGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCCTAACAACAGAAA : 52 333 : erThrSerValAlaLeuAlaValTyrLysGlyProTrpSerPheLeuPro : 348 || !!:!:!!||| !:!!|||||| |||||||||! ! !|||||| erLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuPro 51 : GCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCA : 2 vulgar: gi|350397295|ref|XP_003484831.1| 310 348 . LHQN01044749.1 115 1 - 114 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01044749.1 exonerate:protein2genome:local gene 2 115 114 - . gene_id 1 ; sequence gi|350397295|ref|XP_003484831.1| ; gene_orientation . LHQN01044749.1 exonerate:protein2genome:local cds 2 115 . - . LHQN01044749.1 exonerate:protein2genome:local exon 2 115 . - . insertions 0 ; deletions 0 LHQN01044749.1 exonerate:protein2genome:local similarity 2 115 114 - . alignment_id 1 ; Query gi|350397295|ref|XP_003484831.1| ; Align 116 311 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396509|ref|XP_003484577.1| PREDICTED: odorant receptor 85c-like [Bombus impatiens] Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 336 -> 390 Target range: 112 -> 280 337 : GlnCysMetLysValGlyGluIleValTyrMetThrAsnTrpTyrIleLeuProArgLysArgI : 358 :!! !! |||||||||! !! !||||||||||||.!.|||||| ||| !!!:!|||! ! GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrA 113 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTG : 176 359 : leLeuGluLeuIleLeuIleIleAlaArgSerSerValValIleGluIleThrAlaGlyLysLe : 379 !|||! |||:!!:!!||||||:!!|||||||||:!!||||||:!!|||||||||||||||!! laLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPh 177 : CTCTCGGTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATT : 239 380 : uIleHis<-><->MetSerIleHisThrPheGlyAspVal : 390 !:!!:!! !|||:!! ||||||||||||||| eValTyr***ThrSerSerValAlaThrPheGlyAspVal 240 : CGTATACTGAACATCGTCTGTCGCAACATTTGGCGATGTG : 280 vulgar: gi|350396509|ref|XP_003484577.1| 336 390 . LHQN01048470.1 112 280 + 130 M 45 135 G 0 6 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 113 280 130 + . gene_id 1 ; sequence gi|350396509|ref|XP_003484577.1| ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 113 280 . + . LHQN01048470.1 exonerate:protein2genome:local exon 113 280 . + . insertions 6 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 113 280 130 + . alignment_id 1 ; Query gi|350396509|ref|XP_003484577.1| ; Align 113 337 135 ; Align 254 382 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396511|ref|XP_003484578.1| PREDICTED: odorant receptor 82a-like [Bombus impatiens] Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 334 -> 388 Target range: 112 -> 280 335 : GlnSerLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAspLysThrI : 356 :!!!!!! |||||||||! ! !||||||||||||.!.|||||| ||| !!.!.|||||| GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrA 113 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTG : 176 357 : leLeuAspLeuIleLeuIleIleAlaArgSerGlyValValValGlnIleThrAlaGlyLysMe : 377 !|||! !|||:!!:!!||||||:!!||||||.!!:!!|||:!!:!!|||||||||||||||.! laLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPh 177 : CTCTCGGTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATT : 239 378 : tValHis<-><->MetSerValTyrThrPheGlyAspVal : 388 .|||:!! !|||||| ||||||||||||||| eValTyr***ThrSerSerValAlaThrPheGlyAspVal 240 : CGTATACTGAACATCGTCTGTCGCAACATTTGGCGATGTG : 280 vulgar: gi|350396511|ref|XP_003484578.1| 334 388 . LHQN01048470.1 112 280 + 137 M 45 135 G 0 6 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 113 280 137 + . gene_id 1 ; sequence gi|350396511|ref|XP_003484578.1| ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 113 280 . + . LHQN01048470.1 exonerate:protein2genome:local exon 113 280 . + . insertions 6 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 113 280 137 + . alignment_id 1 ; Query gi|350396511|ref|XP_003484578.1| ; Align 113 335 135 ; Align 254 380 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397292|ref|XP_003484830.1| PREDICTED: odorant receptor 30a-like [Bombus impatiens] Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 192 -> 239 Target range: 279 -> 420 193 : ValThrProTyrTyrGluIleLeuPheValLeuGlnValLeuSerLeuTyrHisValGlyIleC : 214 :!!! !||| ::: ::: ::! !|||!.!||||||:!!|||!!.|||..!:!:| MetIleProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValAsnValC 280 : ATGATTCCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTAACGTGT : 343 215 : ysTyrIleCysPheAspAsnLeuLeuCysLeuIleAsnLeuHisAlaAlaThrGlnPheArgIl : 235 |||||:!!||||||||||||:::... :::::: !||||||!.!||| !||||||||||| ysTyrLeuCysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArgIl 344 : GTTACCTTTGCTtcgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTAT : 406 236 : eLeuGlnTyrArg : 239 ||||||||||||| eLeuGlnTyrArg 407 : ACTACAATACAGA : 420 vulgar: gi|350397292|ref|XP_003484830.1| 192 239 . LHQN01049471.1 279 420 + 128 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 280 420 128 + . gene_id 1 ; sequence gi|350397292|ref|XP_003484830.1| ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 280 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 280 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 280 420 128 + . alignment_id 1 ; Query gi|350397292|ref|XP_003484830.1| ; Align 280 193 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397203|ref|XP_003484804.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 172 -> 220 Target range: 276 -> 420 173 : SerMetThrProTyrPheGluLeuMetPheMetLeuGlnValValCysSerTyrHisValGlyV : 194 ...|||! !||| ::: ::: ::: !|||!.!:!!! ! !|||!!.|||..!| GlnMetIleProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValAsnV 277 : caaATGATTCCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTAACG : 340 195 : alCysTyrHisCysPheAspAsnIleLeuCysIleLeuAsnLeuHisAlaAlaAlaGlnPheAr : 215 ||||||||! !|||||||||||||||... |||::: !||||||!.!|||!.!|||||||| alCysTyrLeuCysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheAr 341 : TGTGTTACCTTTGCTtcgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCG : 403 216 : gIleLeuGlnHisArg : 220 ||||||||||:!!||| gIleLeuGlnTyrArg 404 : TATACTACAATACAGA : 420 vulgar: gi|350397203|ref|XP_003484804.1| 172 220 . LHQN01049471.1 276 420 + 118 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 277 420 118 + . gene_id 1 ; sequence gi|350397203|ref|XP_003484804.1| ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 277 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 277 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 277 420 118 + . alignment_id 1 ; Query gi|350397203|ref|XP_003484804.1| ; Align 277 173 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927557|ref|XP_003494290.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 185 -> 223 Target range: 306 -> 420 186 : LeuIleGlnAlaLeuThrLeuTyrGlnValGlyValCysTyrLeuCysValAspAsnIlePheC : 207 |||! |||||||||:!!:!!|||||||||..!||||||||||||||| |||||||||||| LeuThrGlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePheP 307 : ctCACGCAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttt : 370 208 : ysIleMetCysLeuHisValAlaSerGlnPheArgIleLeuGlnTyrArg : 223 |||||||||||||||||||||.!!|||||||||||||||||||||||| heIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 371 : tcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: gi|815927557|ref|XP_003494290.2| 185 223 . LHQN01049471.1 306 420 + 165 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 307 420 165 + . gene_id 1 ; sequence gi|815927557|ref|XP_003494290.2| ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 307 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 307 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 307 420 165 + . alignment_id 1 ; Query gi|815927557|ref|XP_003494290.2| ; Align 307 186 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350397295|ref|XP_003484831.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 181 -> 219 Target range: 306 -> 420 182 : LeuLeuGlnLeuMetAlaLeuTyrTyrValGlyValGlyTyrPheCysPheAspAsnLeuLeuC : 203 ||| !||| !:!::!!:!!||| ! |||..!||| !!|||.!!||||||||||||:::... LeuThrGlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePheP 307 : ctCACGCAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttt : 370 204 : ysValMetSerLeuHisLeuAlaThrGlnPheGlnIleLeuGlnTyrLys : 219 :::||| !||||||:!!||| !||||||!::||||||||||||!:! heIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 371 : tcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: gi|350397295|ref|XP_003484831.1| 181 219 . LHQN01049471.1 306 420 + 112 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 307 420 112 + . gene_id 1 ; sequence gi|350397295|ref|XP_003484831.1| ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 307 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 307 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 307 420 112 + . alignment_id 1 ; Query gi|350397295|ref|XP_003484831.1| ; Align 307 182 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815928688|ref|XP_012248811.1| PREDICTED: odorant receptor Or1-like, partial [Bombus impatiens] Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 98 -> 144 Target range: 1345 -> 1207 99 : AspThrLeuPheValGlyLeuLeuLeuHisIleCysCysGlnLeuGluMetLeuValTyrAr : 119 |||!.!|||||| !|||||||||:!!||||||! !||||||!!!|||!!:||| !:!!|| AspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisAr 1345 : GACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCG : 1285 120 : gLeuHisAsnIleGluGlyHisGluIleGlnSerLeuLysHisCysValTrpHisHisAsnL : 140 |||| ! !:!|||:!! ! !!..! ! ||| !|||!!.|||!.!!::|||||| !!: gLeuLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrA 1284 : TCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATC : 1222 141 : ysIlePheArgPhe : 144 ::|||!:!!:!||| rgIleTyrLysPhe 1221 : GCATATACAAGTTT : 1208 vulgar: gi|815928688|ref|XP_012248811.1| 98 144 . LHQN01050085.1 1345 1207 - 120 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 1208 1345 120 - . gene_id 1 ; sequence gi|815928688|ref|XP_012248811.1| ; gene_orientation . LHQN01050085.1 exonerate:protein2genome:local cds 1208 1345 . - . LHQN01050085.1 exonerate:protein2genome:local exon 1208 1345 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 1208 1345 120 - . alignment_id 1 ; Query gi|815928688|ref|XP_012248811.1| ; Align 1346 99 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920796|ref|XP_012245315.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414583.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold34, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 143 -> 232 Target range: 619699 -> 619966 144 : ValValLeuAlaPheLeuProAlaArgLeuSerAsnMetArgTyrAsnAspSerAlaL : 163 |||:!!!!! !! ! ! !!||| !:!!!:! |||!:! !.. !!..! !| ValIlePheTrpSerCysThrAlaValValAsnLeuMetLysArgThrTyrGlnLeuL 619700 : GTAATCTTCTGGTCATGCACAGCAGTTGTAAATCTGATGAAACGGACGTATCAACTTT : 619757 164 : euPhePheArgGlyTyrPheProTyrAsnThrSerIleSerProAsnPheGluLeuTh : 182 ||!!..!.!:!!.!!::!:!|||||||||..!!!!||||||||| !!::|||...|| euLeuIleLysAlaTrpTyrProTyrAsnValThrIleSerProAlaTyrGluPheTh 619758 : TATTGATAAAAGCATGGTATCCTTATAATGTAACAATTTCGCCAGCTTAtgaatttac : 619814 183 : rMetIleGlyGlnPheValAlaThrValTyrAlaAlaAsnThrTyrThrAlaIleAsp : 201 |:::::: ||| !!|||!.!..!..! ... ... ..!||||||||| rIleLeuHisGlnValValGlyValThrValAsnCysIleAsnAsnValAlaIleAsp 619815 : tattttacatCAAGTCGTGGGTGTCACTGtaaattgtattaataatGTAGCAATAGAT : 619871 202 : ThrPheValValLeuLeuIlePheHisValCysGlyGlnLeuSerAsnLeuArgAspA : 221 ||||||:!!..! !!!!|||.!. !!.!||| !!||||||!!! !|||!!! !!: ThrPheIleThrGlyPheIleIleThrAlaCysCysGlnLeuThrLeuLeuSerTyrA 619872 : ACTTTTATAACAGGTTTTATAATAACTGCTTGTTGCCAATTGACACTCTTAAGTTATA : 619931 222 : spLeuGlnLysIleHisSerTyrAspLysLysAsp : 232 !!:!!.....!||||||! ! ! ! :!!|||!!: snIleSerSerIleHisTyrGluAlaGluLysGlu 619932 : ACATCTCTTCGATACACTATGAAGCGGAGAAAGAA : 619966 vulgar: gi|815920796|ref|XP_012245315.1| 143 232 . KQ414583.1 619699 619966 + 116 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414583.1 exonerate:protein2genome:local gene 619700 619966 116 + . gene_id 1 ; sequence gi|815920796|ref|XP_012245315.1| ; gene_orientation . KQ414583.1 exonerate:protein2genome:local cds 619700 619966 . + . KQ414583.1 exonerate:protein2genome:local exon 619700 619966 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local similarity 619700 619966 116 + . alignment_id 1 ; Query gi|815920796|ref|XP_012245315.1| ; Align 619700 144 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414588.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold11, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 261 -> 333 Target range: 776393 -> 776670 262 : PheLeuValAlaGlnGlnPheHisLeuLeuIleIleThrLeuProGlyGlnValIleT : 281 |||:!!:!! !||| ! ! |||:!!||| !:!!||||||||||||||| !!:!:! PheIleMetIleGlnLeuValHisValLeuTyrLeuThrLeuProGlyGlnPheValI 776394 : TTTATCATGATTCAATTGGTACACGTACTTTATCTAACTCTTCCAGGACAATTCGTGA : 776451 282 : hrAspHisSerPheGluLeuThrAsnAsp{Il} >>>> Target Intron 1 >> : 291 !||| !:! |||:!!:!!.!....{||} 61 bp leAspAlaAsnGluGluIleSerGluSer{Il}++ 776452 : TCGACGCGAACGAGGAAATCTCCGAATCG{AT}gt....................... : 776485 292 : >> {e}TyrArgSerMetTrpTyrAsnMetProIleAsnValGlnArgValLeuHis : 308 {|}|||!!!:!!:!!|||||||||! !! !....!||| !:!!!!! ++{e}TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheVal 776486 : ..ag{A}TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTA : 776593 309 : MetMetGlnMetArgSerSerLysProCysLysLeuThrAlaGlyGlyIleTyrGluM : 328 :!: ! !! !.!!!! !... !! !:!!:!!||||||||||||:!! ! !| LeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrM 776594 : TTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAA : 776653 329 : etAsnIleGluAsnPhe : 333 |||||:!::!!!:!||| etAsnLeuGlnSerPhe 776654 : TGAACTTGCAAAGTTTC : 776670 vulgar: gi|815916412|ref|XP_012243371.1| 261 333 . KQ414588.1 776393 776670 + 122 M 29 87 S 0 2 5 0 2 I 0 57 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414588.1 exonerate:protein2genome:local gene 776394 776670 122 + . gene_id 1 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation + KQ414588.1 exonerate:protein2genome:local cds 776394 776482 . + . KQ414588.1 exonerate:protein2genome:local exon 776394 776482 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local splice5 776483 776484 . + . intron_id 1 ; splice_site "GT" KQ414588.1 exonerate:protein2genome:local intron 776483 776543 . + . intron_id 1 KQ414588.1 exonerate:protein2genome:local splice3 776542 776543 . + . intron_id 0 ; splice_site "AG" KQ414588.1 exonerate:protein2genome:local cds 776544 776670 . + . KQ414588.1 exonerate:protein2genome:local exon 776544 776670 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local similarity 776394 776670 122 + . alignment_id 1 ; Query gi|815916412|ref|XP_012243371.1| ; Align 776394 262 87 ; Align 776545 292 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: KQ414588.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold11, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 125 -> 177 Target range: 776529 -> 776685 126 : IleTyrAspAlaIleTyrGluAlaSerTrpTyrAsnThrAsnProLysThrGlnAlaL : 145 :!!:!! !:!!! !|||...|||! !|||||||||!:!:!! !!:!||||||:!!| ValHisPheSerArgTyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerL 776530 : GTCCATTTTTCTAGATACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGT : 776587 146 : euTyrLeuLeuAlaLeuArgArgSerLeuThrProCysTyrLeuThrAlaGlyGlyLe : 164 ||!:!:!!||||||||||||!.!!!!|||:!! !! ! ! :!!|||||||||||||| euPheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLe 776588 : TGTTTGTATTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACT : 776644 165 : uIleArgLeuAsnMetGluSerPheSerGluValIleLys : 177 ||||! !:!!|||:!!:!!|||||||||||||||! !::: uIleThrMetAsnLeuGlnSerPheSerGluValThrArg 776645 : AATTACAATGAACTTGCAAAGTTTCTCAGAGGTAACACGT : 776685 vulgar: gi|815925234|ref|XP_012247254.1| 125 177 . KQ414588.1 776529 776685 + 137 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414588.1 exonerate:protein2genome:local gene 776530 776685 137 + . gene_id 1 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation . KQ414588.1 exonerate:protein2genome:local cds 776530 776685 . + . KQ414588.1 exonerate:protein2genome:local exon 776530 776685 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local similarity 776530 776685 137 + . alignment_id 1 ; Query gi|815925234|ref|XP_012247254.1| ; Align 776530 126 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815914351|ref|XP_012242451.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414601.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold45, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 618 Query range: 0 -> 203 Target range: 1070935 -> 1066755 1 : MetTyrLeuTyrGlnPheProValMetPheValAlaLeuSerHisIleSerAlaIl : 19 |||||| !!:!||| !|||:!!|||!!.|||!.!|||!:!||||||!!!.!!:! MetTyrAlaPheGlnGlyProLeuMetLeuValGlyLeuAsnHisIleThrThrLe 1070935 : ATGTACGCGTTCCAGGGTCCGCTTATGTTGGTGGGGTTGAACCACATAACCACCCT : 1070881 20 : eSerLeuLeuValAsnLeuValLeuHisIleCysGlyLysPheSerIleLeuSerT : 38 !||||||:!!|||!:!||||||||||||:!!||||||||||||||||||||||||| uSerLeuIleValSerLeuValLeuHisValCysGlyLysPheSerIleLeuSerT 1070880 : CAGTTTAATAGTTAGCCTGGTGCTGCATGTTTGCGGTAAATTCTCGATCTTGTCGT : 1070824 39 : yrArgIleGlnAsnIleSerThrAsnSerAsnValAsnLeuAspSerValIleLys : 56 |||||||||||||||||... ...|||!!.! !||||||:!!!!! !|||:!! yrArgIleGlnAsnIleGlnIleGlnSerLysAspAsnLeuAsnArgLysIleGlu 1070823 : ATCgtatacaaaatattcaaatccaGTCGAAAGATAATTTAAACAGGAAAATCGAG : 1070770 57 : GluPheValThrAlaHisValLysLeuIle{Th} >>>> Target Intron 1 : 67 !!:|||||||||! !|||:!!|||||||||{ } 1999 bp AspPheValThrAspHisIleLysLeuIle{Le}-+ 1070769 : GATTTCGTGACCGATCACATCAAATTGATA{TT}at.................... : 1070733 68 : >>>> {r}ThrAlaAsnSerIleAsnSerAlaLeuGlnValPheLeuLeuValG : 83 {!}! !||||||||||||||||||||||||:!!|||.!!||||||:!!! ++{u}MetAlaAsnSerIleAsnSerAlaLeuGluValIleLeuLeuIleA 1070732 : .....ag{A}ATGGCGAACTCCATCAATTCAGCACTGGAAGTTATCCTTCTGATCG : 1068690 84 : luLeuLeuGlnThrThrIleArgMetAlaThrIleIleTyrMetMetLeuLeu > : 101 !:||| !||||||!:!||||||||||||..!:!!||||||! |||||| spLeuThrGlnThrSerIleArgMetAlaValLeuIleTyrSerAlaLeuLeu++ 1068689 : ATCTGACGCAAACAAGCATAAGAATGGCTGTTCTTATATACAGTGCCCTTCTAgt. : 1068634 102 : >>> Target Intron 2 >>>> AsnProSerGlySerPheValAsnThrLeu : 110 97 bp :::|||..!!.!!:!.!!|||..!|||!!! ++SerProGluAlaAsnLeuValGlyThrPhe 1068633 : ........................agagtCCCGAAGCAAATCTCGTGGGCACGTTC : 1068512 111 : ThrTyrValLeuTyrIleSerIleIleIleSerMetLeuTyrLeuTyrSerPheMe : 129 ||||||||||||||||||! !:!!:!!! |||:!!||||||||||||||||||!! ThrTyrValLeuTyrIleLeuLeuValThrSerLeuLeuTyrLeuTyrSerPheIl 1068511 : ACATACGTTTTGTACATTTTGTTAGTCACGTCGTTGTTATACTTGTACTCGTTCAT : 1068455 130 : tGlyGluGlnLeuSerAsnGlu >>>> Target Intron 3 >>>> SerMe : 138 :||||||!:!|||:!! !!||| 65 bp |||! eGlyGluArgLeuAlaTyrGlu++ ++SerTh 1068454 : AGGTGAACGATTGGCATACGAGgt.........................agtCGAC : 1068363 139 : tLysValSerGluAlaPheTyrAlaThrAspTrpAsnAsnLeuSerLeuHisAsnG : 157 !||||||!!!||||||!:!|||! !|||!!:|||.!..!.||||||:!!!.!|||| rLysValThrGluAlaTyrTyrAspThrGluTrpGlnGluLeuSerValArgAsnG 1068362 : GAAAGTGACCGAAGCGTACTATGATACCGAGTGGCAAGAATTATCGGTCCGTAATC : 1068306 158 : lnLysLeuLeuLeuLeuValMetThrLeuGlyGlnGlnAsnLeuHisValThrAla : 175 |||||||||||||||||!.!||| !! !|||!:!::!!..|||:!!:!!|||||| lnLysLeuLeuLeuLeuAlaMetArgSerGlyArgArgThrLeuTyrLeuThrAla 1068305 : AAAAGCTGTTGCTTCTTGCCATGCGTTCTGGACGAAGAACGTTATACCTTACAGCT : 1068252 176 : GlyLysPheTyrThrPheSerLeuTyrGlyPheIleAla >>>> Target Int : 189 |||||| ! |||!.!||||||||||||||||||||| ! 1410 b GlyLysValTyrAsnPheSerLeuTyrGlyPheIleHis++ 1068251 : GGAAAAGTGTACAATTTCTCCTTGTACGGTTTTATCCATgt............... : 1068208 190 : ron 4 >>>> ValMetLysThrSerPheGlyTyrValSerLeuLeuArgThrLe : 203 p :!!||||||||||||||||||||||||||||||||||||||||| ++IleMetLysThrSerPheGlyTyrValSerLeuLeuArgThrLe 1068207 : ..........agaTTATGAAAACCTCCTTCGGATACGTTTCTCTATTACGAACATT : 1066758 204 : u : 203 | u 1066757 : A : 1066756 vulgar: gi|815914351|ref|XP_012242451.1| 0 203 . KQ414601.1 1070935 1066755 - 618 M 66 198 S 0 2 5 0 2 I 0 1995 3 0 2 S 1 1 M 33 99 5 0 2 I 0 93 3 0 2 M 36 108 5 0 2 I 0 61 3 0 2 M 52 156 5 0 2 I 0 1406 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414601.1 exonerate:protein2genome:local gene 1066756 1070935 618 - . gene_id 1 ; sequence gi|815914351|ref|XP_012242451.1| ; gene_orientation + KQ414601.1 exonerate:protein2genome:local cds 1070736 1070935 . - . KQ414601.1 exonerate:protein2genome:local exon 1070736 1070935 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local splice5 1070734 1070735 . - . intron_id 1 ; splice_site "AT" KQ414601.1 exonerate:protein2genome:local intron 1068737 1070735 . - . intron_id 1 KQ414601.1 exonerate:protein2genome:local splice3 1068737 1068738 . - . intron_id 0 ; splice_site "AG" KQ414601.1 exonerate:protein2genome:local cds 1068637 1068736 . - . KQ414601.1 exonerate:protein2genome:local exon 1068637 1068736 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local splice5 1068635 1068636 . - . intron_id 2 ; splice_site "GT" KQ414601.1 exonerate:protein2genome:local intron 1068540 1068636 . - . intron_id 2 KQ414601.1 exonerate:protein2genome:local splice3 1068540 1068541 . - . intron_id 1 ; splice_site "ag" KQ414601.1 exonerate:protein2genome:local cds 1068432 1068539 . - . KQ414601.1 exonerate:protein2genome:local exon 1068432 1068539 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local splice5 1068430 1068431 . - . intron_id 3 ; splice_site "GT" KQ414601.1 exonerate:protein2genome:local intron 1068367 1068431 . - . intron_id 3 KQ414601.1 exonerate:protein2genome:local splice3 1068367 1068368 . - . intron_id 2 ; splice_site "ag" KQ414601.1 exonerate:protein2genome:local cds 1068211 1068366 . - . KQ414601.1 exonerate:protein2genome:local exon 1068211 1068366 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local splice5 1068209 1068210 . - . intron_id 4 ; splice_site "GT" KQ414601.1 exonerate:protein2genome:local intron 1066801 1068210 . - . intron_id 4 KQ414601.1 exonerate:protein2genome:local splice3 1066801 1066802 . - . intron_id 3 ; splice_site "ag" KQ414601.1 exonerate:protein2genome:local cds 1066756 1066800 . - . KQ414601.1 exonerate:protein2genome:local exon 1066756 1066800 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local similarity 1066756 1070935 618 - . alignment_id 1 ; Query gi|815914351|ref|XP_012242451.1| ; Align 1070936 1 198 ; Align 1068736 68 99 ; Align 1068540 101 108 ; Align 1068367 137 156 ; Align 1066801 189 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815923208|ref|XP_003493069.2| PREDICTED: putative odorant receptor 85d, partial [Bombus impatiens] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1402 Query range: 0 -> 399 Target range: 1308263 -> 1305885 1 : MetLysGluLeuSerAsnThrSerIleAspTyrTyrIleLeuProAsnArgIlePh : 19 |||||||||! !|||!!.||||||||||||||||||||||||||||||!:!|||.! MetLysGluProSerLysThrSerIleAspTyrTyrIleLeuProAsnLysIleLe 1308263 : ATGAAAGAACCCTCTAAAACGTCGATCGACTATTATATACTACCGAATAAAATCCT : 1308209 20 : eCysSerMetValGlyMetTrpProIleGluGluLysSerSerThrCysSerLysI : 38 .|||.!!|||!.!|||:!:|||||||||!!:||||||||||||||| !!!!!|||: uCysGlyMetAlaGlyValTrpProIleAspGluLysSerSerThrArgThrLysL 1308208 : GTGCGGTATGGCCGGTGTCTGGCCTATCGACGAGAAAAGTTCAACGCGTACCAAAC : 1308152 39 : lePheAlaTyrIleArgLeuIleLeuAlaLeuIleAlaIleAsnSerIlePheVal : 56 !!|||||||||.!!|||||||||!!!!.!|||:!:|||:!!||||||!!:!!.||| euPheAlaTyrPheArgLeuIlePheGlyLeuValAlaLeuAsnSerMetLeuVal 1308151 : TATTCGCATACTTTCGGCTGATATTCGGATTAGTGGCACTCAATAGCATGTTAGTG : 1308098 57 : ProGluIleMetMetIleValSerSerTrpGlyAspIleThrIleLeuAla{G} : 74 |||||||||||||||:!!:!!|||!:!||||||:!!:!!! !|||||||||{|} ProGluIleMetMetValIleSerAsnTrpGlyAsnLeuArgIleLeuAla{G}+- 1308097 : CCAGAAATTATGATGGTAATATCGAATTGGGGCAACTTAAGGATCCTAGCA{G}gc : 1308043 75 : >>>> Target Intron 1 >>>> {ly}ValGlyCysValLeuThrThrIleG : 83 82 bp {||}|||||||||||||||||||||:!!| ++{ly}ValGlyCysValLeuThrThrLeuG 1308042 : .........................ag{GA}GTAGGATGCGTTTTAACAACACTCG : 1307935 84 : lyGlnLeuLeuPheLysMetIleTyrLeuIleValArgArgGluArgSerTyrArg : 101 |||||! !|||||||||! !||||||||||||:!!||||||!!:!:!!!!|||||| lyGlnSerLeuPheLysThrIleTyrLeuIleMetArgArgAspLysThrTyrArg 1307934 : GGCAATCGTTATTCAAAACGATTTACCTAATAATGAGAAGGGATAAAACCTACAGA : 1307881 102 : LeuTyrTyrGluIleArgSerLeuTrpAspThrAlaAsnAspSerLysGluMetGl : 120 ||||||||||||||||||..!|||||| !!:!!.!!:!!||| !!||||||! || LeuTyrTyrGluIleArgAspLeuTrpHisSerThrAspAspProLysGluArgGl 1307880 : CTTTACTACGAAATACGTGATCTGTGGCATTCTACCGACGATCCCAAAGAGAGACA : 1307824 121 : nProTyrIleArgValAlaTyrTrpAlaArgIleCysThrIleAlaPheTyrLeuS : 139 | !!:! !!.!:!!|||||||||||||||! ! !||||||!.!||||||! !: nAsnPheGluAsnLeuAlaTyrTrpAlaArgThrIleThrIleValPheTyrSerA 1307823 : GAACTTCGAAAATCTCGCTTATTGGGCAAGAACAATTACAATAGTCTTTTACTCGG : 1307767 140 : erCysMetCysAsnValIleThrPheSerIleAlaGlyValValAspTyrPheArg : 157 !!||||||!! ||||||.!!||||||!!!.!!|||!.!..! !|||||||||! ! laCysMetTrpAsnValPheThrPheThrPheAlaAlaThrHisAspTyrPheMet 1307766 : CCTGCATGTGGAACGTGTTCACATTCACGTTTGCTGCGACCCACGATTATTTCATG : 1307713 158 : PheGluTyrAsnAlaSerSerThrAspAsnSerArgHisLeuProPheValVal{T : 176 .!!||||||||| !|||!:!.!!!!:!!.|||!:!||||||||||||! !|||{| IleGluTyrAsnIleSerAsnAlaGluLysSerLysHisLeuProPheGluVal{T 1307712 : ATCGAATACAACATCAGCAACGCTGAAAAGAGCAAACACTTGCCCTTCGAAGTC{T : 1307656 177 : r} >>>> Target Intron 2 >>>> {p}TyrGlyThrAspIleSerAlaS : 184 |} 304 bp {|}|||||||||||||||!!!|||| r}++ ++{p}TyrGlyThrAspIleThrAlaS 1307655 : G}gt.........................ag{G}TATGGAACAGATATCACAGCAT : 1307328 185 : erProLysPheGluIleAlaPheIleCysGlnIleLeuSerSerMetValCysAla : 202 ||||| |||||||||||||||:!!||||||:!::!!:!! ! !! ||| erProLeuPheGluIleAlaPheValCysGlnLeuIleAlaValAlaPheValAla 1307327 : CTCCTCTCTTCGAAATCGCTTTCGTTTGTCAACTGATTGCGGTTGCATTTGTGGCC : 1307274 203 : ThrThrIleCysGlyLeuAspAlaSerPheMetThrThrIleLeuHisValSerAl : 221 .!!:!!! !! |||||||||!.!|||! !||||||||||||||||||||||||!. AlaSerThrSerGlyLeuAspGlySerCysMetThrThrIleLeuHisValSerGl 1307273 : GCCTCAACCTCAGGCTTGGATGGATCATGTATGACCACGATTTTACACGTATCTGG : 1307217 222 : aGlnPheLysLeuIleAsnThrTrpIleSerAsnIleGlyThrGluIleAsnCysA : 240 !|||||||||||||||!:!||||||:!!|||!!.!!:|||..!|||! !||| !! yGlnPheLysLeuIleSerThrTrpValSerLysMetGlyValGluThrAsnValL 1307216 : ACAATTCAAATTAATCAGTACGTGGGTCAGCAAAATGGGAGTAGAAACAAATGTCA : 1307160 241 : snProAsnTyrThrArgLysIleLysIleGluLeuMetArgCysIleArgHisHis : 258 !.||| !|||:!!||||||:!!:!!:!:!!:|||!!:!:!||||||||||||||| ysProValTyrSerArgLysLeuGluValAspLeuIleLysCysIleArgHisHis 1307159 : AACCTGTTTATTCGCGAAAATTAGAAGTGGACCTGATCAAATGCATTCGTCATCAC : 1307106 259 : GlnArgMetIle{Hi} >>>> Target Intron 3 >>>> {s}ValValAs : 266 ||||||||||||{:!} 169 bp {!}|||||||| GlnArgMetIle{As}++ ++{n}ValValAs 1307105 : CAACGAATGATA{AA}gt.........................ag{C}GTGGTGAA : 1306913 267 : nAspValAsnAsnLeuPheThrProIleIlePheMetGlnIleLeuThrSerGlyI : 285 ||||||||||||||||||||||||||||:!!|||:!:|||:!!||||||||||||| nAspValAsnAsnLeuPheThrProIleValPheValGlnLeuLeuThrSerGlyI 1306912 : TGatgtgaataatttatttactccCATCGTTTTCGTACAACTTCTTACAAGCGGAA : 1306856 286 : leGluIleCysLeuSerGlyTyrAlaMetLeuAspAsnGluAlaGluIleThrAsp : 303 ||! !|||||||||||||||!:!|||:!:!!!||||||!!:|||... |||||| leValIleCysLeuSerGlyPheAlaValPheAspAsnAspAlaArg---ThrAsp 1306855 : TAGTAATTTGTTTAAGTGGATTCGCGGTTTTCGATAACGACGCCCGT---ACCGAT : 1306805 304 : IleLeuLysCysThrSerTyrPheIleSerValThrValGlnLeuLeuLeuTrpCy : 322 |||||||||! !..!||||||!!. !|||:!! !:!!||||||||||||||||| IleLeuLysTyrValSerTyrLeuSerSerIleTrpLeuGlnLeuLeuLeuTrpCy 1306804 : ATTCTGAAATACGTATCTTATTTGTCCTCGATTTGGTTGCAACTTTTGTTATGGTG : 1306748 323 : sTrpProGlyGluIleLeuIleGlnGluAsnGlnGluValGlyGlnValAlaTyrP : 341 |! !|||||||||||||||:!!||||||!:! !|||:!!|||!!.|||!.!|||! sLeuProGlyGluIleLeuValGlnGluSerLeuGluIleGlyHisValValTyrL 1306747 : TTTGCCCGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGACACGTAGTCTACT : 1306691 342 : heAsnIleProTrpTyrAsnLeuProSerMetTyrGlnArgHisLeuCysLeuMet : 359 !.|||:!!|||||||||||||||||| !!!!:||||||||| ! ||||||:!!||| euAsnValProTrpTyrAsnLeuProProIleTyrGlnArgLysLeuCysMetMet 1306690 : TAAATGTACCATGGTACAATTTGCCGCCAATTTACCAGAGAAAACTTTGCATGATG : 1306637 360 : IleValArgAlaGlnGlnTyrCysSerIleSerAlaLeuThrPheGlnThrLeuSe : 378 |||:!!||||||||||||||||||||||||!!!||||||||||||!:!|||||||| IleLeuArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPheArgThrLeuSe 1306636 : ATCCTTAGGGCACAACAATATTGCAGCATCACGGCATTAACGTTTCGAACGTTGTC : 1306580 379 : rIleHisThrLeuThrThr >>>> Target Intron 4 >>>> ValPheAs : 387 ||||||||||||||||!:! 629 bp |||||||| rIleHisThrLeuThrSer++ ++ValPheAs 1306579 : TATTCACACGTTAACGAGCgt.........................agGTATTCAA : 1305924 388 : nThrAlaAlaSerTyrPheThrLeuLeuArgGlnIle : 399 ||||||||||||||||||||||||||||||||||!!: nThrAlaAlaSerTyrPheThrLeuLeuArgGlnMet 1305923 : TACAGCCGCTTCATATTTCACTTTGCTGCGACAAATG : 1305886 vulgar: gi|815923208|ref|XP_003493069.2| 0 399 . KQ414608.1 1308263 1305885 - 1402 M 73 219 S 0 1 5 0 2 I 0 78 3 0 2 S 1 2 M 101 303 S 0 2 5 0 2 I 0 300 3 0 2 S 1 1 M 86 258 S 0 2 5 0 2 I 0 165 3 0 2 S 1 1 M 37 111 G 1 0 M 83 249 5 0 2 I 0 625 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1305886 1308263 1402 - . gene_id 1 ; sequence gi|815923208|ref|XP_003493069.2| ; gene_orientation + KQ414608.1 exonerate:protein2genome:local cds 1308044 1308263 . - . KQ414608.1 exonerate:protein2genome:local exon 1308044 1308263 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1308042 1308043 . - . intron_id 1 ; splice_site "GC" KQ414608.1 exonerate:protein2genome:local intron 1307962 1308043 . - . intron_id 1 KQ414608.1 exonerate:protein2genome:local splice3 1307962 1307963 . - . intron_id 0 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1307655 1307961 . - . KQ414608.1 exonerate:protein2genome:local exon 1307655 1307961 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1307653 1307654 . - . intron_id 2 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1307351 1307654 . - . intron_id 2 KQ414608.1 exonerate:protein2genome:local splice3 1307351 1307352 . - . intron_id 1 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1307090 1307350 . - . KQ414608.1 exonerate:protein2genome:local exon 1307090 1307350 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1307088 1307089 . - . intron_id 3 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1306921 1307089 . - . intron_id 3 KQ414608.1 exonerate:protein2genome:local splice3 1306921 1306922 . - . intron_id 2 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1306560 1306920 . - . KQ414608.1 exonerate:protein2genome:local exon 1306560 1306920 . - . insertions 0 ; deletions 1 KQ414608.1 exonerate:protein2genome:local splice5 1306558 1306559 . - . intron_id 4 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1305931 1306559 . - . intron_id 4 KQ414608.1 exonerate:protein2genome:local splice3 1305931 1305932 . - . intron_id 3 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1305886 1305930 . - . KQ414608.1 exonerate:protein2genome:local exon 1305886 1305930 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1305886 1308263 1402 - . alignment_id 1 ; Query gi|815923208|ref|XP_003493069.2| ; Align 1308264 1 219 ; Align 1307960 75 303 ; Align 1307350 177 258 ; Align 1306920 264 111 ; Align 1306809 302 249 ; Align 1305931 385 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920792|ref|XP_012245313.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 184 -> 238 Target range: 1306784 -> 1306619 185 : TyrValIleTyrValMetLeuGlnLeuLeuLeuTyrCysTyrMetGlyGluLysLe : 203 |||:!! !! :!! !|||||||||||||||!::|||! ||||||! || TyrLeuSerSerIleTrpLeuGlnLeuLeuLeuTrpCysLeuProGlyGluIleLe 1306784 : TATTTGTCCTCGATTTGGTTGCAACTTTTGTTATGGTGTTTGCCCGGTGAAATTCT : 1306730 204 : uThrValGluSerThrGluIleAlaAsnThrAlaTyr<->AsnAlaGluTrpTyrA : 221 |..! !|||||| !||||||!.!:!!..!!.!||| |||!.! !||||||| uValGlnGluSerLeuGluIleGlyHisValValTyrLeuAsnValProTrpTyrA 1306729 : CGTTCAAGAGAGTTTAGAAATAGGACACGTAGTCTACTTAAATGTACCATGGTACA : 1306673 222 : snLeuProProLysAsnAlaArgTrpLeuValIleIleMetCysArgAlaArg : 238 |||||||||||! !! !||| ||| !!!:!!:!!: !||||||!:! snLeuProProIleTyrGlnArgLysLeuCysMetMetIleLeuArgAlaGln 1306672 : ATTTGCCGCCAATTTACCAGAGAAAACTTTGCATGATGATCCTTAGGGCACAA : 1306620 vulgar: gi|815920792|ref|XP_012245313.1| 184 238 . KQ414608.1 1306784 1306619 - 110 M 31 93 G 0 3 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1306620 1306784 110 - . gene_id 1 ; sequence gi|815920792|ref|XP_012245313.1| ; gene_orientation . KQ414608.1 exonerate:protein2genome:local cds 1306620 1306784 . - . KQ414608.1 exonerate:protein2genome:local exon 1306620 1306784 . - . insertions 3 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1306620 1306784 110 - . alignment_id 1 ; Query gi|815920792|ref|XP_012245313.1| ; Align 1306785 185 93 ; Align 1306689 216 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920796|ref|XP_012245315.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 301 -> 378 Target range: 1306784 -> 1306553 302 : TyrValValTyrValMetLeuGlnLeuPheLeuTyrCysTyrMetGlyGluLysLe : 320 |||:!! !! :!! !|||||||||!!.|||!::|||! ||||||! || TyrLeuSerSerIleTrpLeuGlnLeuLeuLeuTrpCysLeuProGlyGluIleLe 1306784 : TATTTGTCCTCGATTTGGTTGCAACTTTTGTTATGGTGTTTGCCCGGTGAAATTCT : 1306730 321 : uAlaAlaGluSerThrGluIleAlaAsnThrAlaTyrTyr<->AlaGluTrpTyrA : 338 |!.! !|||||| !||||||!.!:!!..!!.!|||! !.! !||||||| uValGlnGluSerLeuGluIleGlyHisValValTyrLeuAsnValProTrpTyrA 1306729 : CGTTCAAGAGAGTTTAGAAATAGGACACGTAGTCTACTTAAATGTACCATGGTACA : 1306673 339 : snLeuProProLysSerAlaArgTrpLeuValIleIleMetCysArgAlaArgSer : 356 |||||||||||! ! ! !||| ||| !!!:!!:!!: !||||||!:!..! snLeuProProIleTyrGlnArgLysLeuCysMetMetIleLeuArgAlaGlnGln 1306672 : ATTTGCCGCCAATTTACCAGAGAAAACTTTGCATGATGATCCTTAGGGCACAACAA : 1306619 357 : SerProLeuGlnIleThrAlaGlyArgPheTyrTrpPheThrLeuAlaLeuTyrTh : 375 ! ! ! !...||||||||| !! !||| !!!.:!!:!! ! !! || Tyr---CysSerIleThrAlaLeuThrPheArgThrLeuSerIleHisThrLeuTh 1306618 : TAT---TGCAGCATCACGGCATTAACGTTTCGAACGTTGTCTATTCACACGTTAAC : 1306565 376 : rGlnValSer : 378 |...|||||| rSerValSer 1306564 : GAGCGTGAGT : 1306554 vulgar: gi|815920796|ref|XP_012245315.1| 301 378 . KQ414608.1 1306784 1306553 - 101 M 32 96 G 0 3 M 24 72 G 1 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1306554 1306784 101 - . gene_id 1 ; sequence gi|815920796|ref|XP_012245315.1| ; gene_orientation . KQ414608.1 exonerate:protein2genome:local cds 1306554 1306784 . - . KQ414608.1 exonerate:protein2genome:local exon 1306554 1306784 . - . insertions 3 ; deletions 1 KQ414608.1 exonerate:protein2genome:local similarity 1306554 1306784 101 - . alignment_id 1 ; Query gi|815920796|ref|XP_012245315.1| ; Align 1306785 302 96 ; Align 1306686 334 72 ; Align 1306614 359 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920800|ref|XP_003492337.2| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 5 -> 129 Target range: 203843 -> 204218 6 : AspAspTrpArgSerAlaLysThrGluGluGluLysThrAlaMetLeuLysMetAlaL : 25 !!:|||||| !!.! !||||||!!: |||!:! !!.!|||:!!:!! .!!: GluAspTrpAlaLysLeuLysThrAspPheGluArgAspValMetIleGlnArgThrA 203844 : GAAGATTGGGCAAAGTTGAAAACGGATTTCGAAAGAGACGTGATGATACAACGAACAC : 203901 26 : ysProAlaAsnPheIleSerValTrpCysSerIleLeuThrLeuThrMetValThrAl : 44 :! !.!!... ! !|||:!! ! !!! ! |||! !!!!||| |||! ! rgIleThrArgAlaThrSerIleLeuSerTyrAlaLeuIlePheThrAlaValMetPh 203902 : GAATTACCCGAGCAACCAGTATACTGAGTTATGCGTTAATATTTACTGCAGTAATGTT : 203958 45 : aTyrLeuSerLeuArgSerIleSerValTyrLeuSerAspArgLeuHisGlu<->Asn : 62 ! :!! !|||! !!!!! !.!!:!! ! !!!! !! ! !:!!||| ||| eMetIleValLeuProArgThrGlyIleThrThrArgTyrValThrAsnGluThrAsn 203959 : CATGATAGTCCTACCAAGAACCGGTATTACCACTAGATACGTAACAAACGAAACCAAC : 204015 63 : ArgAspHisLeuSerLeuTyrProGlyTyrPheProTyrAsnIleArgProValProI : 82 ! ! ! ! |||! !! ! ||| |||::: |||:::||| ! !..!||| IleLysLysLeuPheProValProThrTyrTyrIleTyrAspIleSerGluThrProT 204016 : ATAAAAAAGCTTTTTCCGGTGCCaacttattatatttacgatataTCTGAAACTCCAT : 204075 83 : leLeuLeuMetThrAsnPheAlaGlnValIleAlaGlyTyrSerAlaThrIleCysTy : 101 !!!! !!!:! ! !.!! !|||:!! !.!! ! ! ! !.!!:!!||||| yrPheGluIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTy 204076 : ATTTTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTA : 204132 102 : rThrThrValAspThrPheIleAlaMetLeuValLeuHisIleCysGlyGlnPheGlu : 120 |! ! !||||||!.!|||.!!!.!!!:|||:!!||||||||||||||||||!!.||| rIleGlyValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGlu 204133 : CATTGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAA : 204189 121 : IleLeuArgLysLysLeuThrArgLeu : 129 ! !||||||! !::!|||.!!!.!:!! AsnLeuArgThrArgLeuAlaAsnIle 204190 : AATCTTCGTACACGACTTGCAAACATA : 204218 vulgar: gi|815920800|ref|XP_003492337.2| 5 129 . KQ414617.1 203843 204218 + 133 M 56 168 G 0 3 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203844 204218 133 + . gene_id 1 ; sequence gi|815920800|ref|XP_003492337.2| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203844 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 203844 204218 . + . insertions 3 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203844 204218 133 + . alignment_id 1 ; Query gi|815920800|ref|XP_003492337.2| ; Align 203844 6 168 ; Align 204015 62 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920800|ref|XP_003492337.2| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 213 -> 285 Target range: 204718 -> 204934 214 : PheIleLeuValHisValTyrLeuTyrCysTyrIleGlyGluMetLeuLeuIleGlnS : 233 |||:::... :::|||! !! ...... ||| !|||:!!| PheLeuPhePheProLeuTyrTyrLeuSerSerPheSerIleSerLeuSerIleLysS 204719 : tttcttttctttcctctatACTACTTgtcttcattttcaatttctttgtCGATAAAGT : 204776 234 : erArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProSerGl : 252 ||..!|||:!:! ! !:!!|||||||||!!!.!.|||! |||:!!!.! !!!:!:! erGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsnLy 204777 : CCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAACAA : 204833 253 : nThrLysCysLeuLeuPheIleMetAsnArgSerThrArgProLeuCysLeuThrAla : 271 !.!!||| !!|||:!!!!.|||||| |||:!! !||||||||||||||||||||| sAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuThrAla 204834 : GGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGca : 204890 272 : GlyLysPheGlyIlePheSerMetGluLeuPheSerThrIle : 285 ||||||... ...!!!||| ! !|||!!!!.!:!! GlyLysLeuPheProMetThrMetLeuThrPheCysAsnVal 204891 : ggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: gi|815920800|ref|XP_003492337.2| 213 285 . KQ414617.1 204718 204934 + 125 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204719 204934 125 + . gene_id 2 ; sequence gi|815920800|ref|XP_003492337.2| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204719 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204719 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204719 204934 125 + . alignment_id 2 ; Query gi|815920800|ref|XP_003492337.2| ; Align 204719 214 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920798|ref|XP_012245316.1| PREDICTED: odorant receptor 67c-like [Bombus impatiens] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 117 -> 175 Target range: 204044 -> 204218 118 : TyrPheProTyrAsnThrSerIleSerProAsnPheGluLeuThrMetIleGlyGlnT : 137 |||::: |||::: ||| !!!!||| !!||||||:!!! !.!.:!! !||| TyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnM 204045 : tattatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAA : 204102 138 : yrValAlaAlaIleTyrAlaAlaAsnThrTyrThrThrValAspThrLeuValValLe : 156 !.!.!! !:!:! !||| ! !|||! ! !||||||!.!!!! !!! !:! etAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIl 204103 : TGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAAT : 204159 157 : uLeuIlePheHisValCysGlyGlnLeuSerIleLeuArgGlnAspLeuGlyArgIle : 175 !||||||.!!|||:!!||||||||||||..!! !|||||| ! |||!.!!.!||| eLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIle 204160 : ATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATA : 204216 vulgar: gi|815920798|ref|XP_012245316.1| 117 175 . KQ414617.1 204044 204218 + 101 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204045 204218 101 + . gene_id 1 ; sequence gi|815920798|ref|XP_012245316.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204045 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 204045 204218 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204045 204218 101 + . alignment_id 1 ; Query gi|815920798|ref|XP_012245316.1| ; Align 204045 118 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920792|ref|XP_012245313.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 26 -> 108 Target range: 203567 -> 204218 27 : IleValMetValCysPheIleCysAla<->ProGlnThrPheAsnLeuSerIleIleA : 45 :!::!!!!::!! !|||:!!|||!.! ||| !!:!::!|||! !! ! !. ValLeuIleIleLeuPheValCysValLeuProCysLeuTyrSerLeuIleLysGlnC 203568 : GTGCTGATAATCCTCTTCGTTTGTGTACTTCCTTGCCTCTACTCTTTGATCAAACAAT : 203625 46 : laGlyAspSerAspLeuValIleGluAsnLeuSerThrAsnIleThrIleThrIleSe : 64 .!! !..!! ! !||||||!!:||||||||| !!.!||| !!:!:||||||!! ysAspSerLeuMetAlaValIleAspAsnLeuSerTyrThrIleProLeuThrIleTh 203626 : GTGACAGTTTAATGGCGGTGATAGATAATCTTTCATATACTATTCCTTTGACAATAAC : 203682 65 : rLeuMetLysThrMetAlaValTrpMetLysGlyLys{P} >>>> Target Intr : 77 !||||||||| !!!:!.!:!!! !! ||| :::{ } 402 bp rLeuMetLysTyrIleValIleLeuSerLysLysGlu{A}++ 203683 : ACTGATGAAGTATATCGTTATATTGAGTAAAAaggaa{g}gt................ : 203724 78 : on 1 >>>> {ro}IleThrTyrThrThrValAspThrPheValValLeuLeuIleP : 92 {!!}:!! !|||! ! !||||||!.!||| !!! !:!!||||||. -+{la}LeuCysTyrIleGlyValAspAsnPhePheGlyIleLeuIleL 203725 : .........gg{CA}CTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTGATCC : 204168 93 : heHisValCysGlyGlnLeuSerIleLeuArgAspAspLeuArgLysIle : 108 !!|||:!!||||||||||||..!! !|||||| ||| !!!.||| euHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIle 204169 : TTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATA : 204218 vulgar: gi|815920792|ref|XP_012245313.1| 26 108 . KQ414617.1 203567 204218 + 104 M 9 27 G 0 3 M 41 123 S 0 1 5 0 2 I 0 398 3 0 2 S 1 2 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203568 204218 104 + . gene_id 1 ; sequence gi|815920792|ref|XP_012245313.1| ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203568 203721 . + . KQ414617.1 exonerate:protein2genome:local exon 203568 203721 . + . insertions 3 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 203722 203723 . + . intron_id 1 ; splice_site "gt" KQ414617.1 exonerate:protein2genome:local intron 203722 204123 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 204122 204123 . + . intron_id 0 ; splice_site "GG" KQ414617.1 exonerate:protein2genome:local cds 204124 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 204124 204218 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203568 204218 104 + . alignment_id 1 ; Query gi|815920792|ref|XP_012245313.1| ; Align 203568 27 27 ; Align 203598 36 123 ; Align 204126 78 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 322 -> 393 Target range: 204721 -> 204934 323 : LeuThrPheAsnMetPheLeuLeuCysTyrIleGlyAsnLeuLeuIleGluLysSerT : 342 ||| ||| :::::!! !||| ...... ||| !|||||| LeuPhePheProLeuTyrTyrLeuSerSerPheSerIleSerLeuSerIleLysSerG 204722 : cttttctttcctctatACTACTTgtcttcattttcaatttctttgtCGATAAAGTCCG : 204779 343 : hrSerValGlyIleSerCysTyrMetIleAspTrpTyrArgLeuProValLysThrVa : 361 !..!||| !:!!:!!...||| !!!:|||! !.!||| ! !!!.! !!. luGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsnLysAl 204780 : AAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAACAAGGC : 204836 362 : lGlnAspLeuIleLeuIleIleAlaMetSerAsnSerProAlaLysIleSerAlaGly : 380 !:!!..!||||||||||||!!:|||! !:!!.!.!!!||| ! :!!!!!|||||| aLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuThrAlaGly 204837 : GAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGcagga : 204893 381 : ArgIlePheLeuLeuSerLeuThrThrPheGlyAsnVal : 393 ::::::||| ::!!!!:!! !|||||| !!|||||| LysLeuPheProMetThrMetLeuThrPheCysAsnVal 204894 : aaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: gi|815911896|ref|XP_012241389.1| 322 393 . KQ414617.1 204721 204934 + 100 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204722 204934 100 + . gene_id 1 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204722 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204722 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204722 204934 100 + . alignment_id 1 ; Query gi|815911896|ref|XP_012241389.1| ; Align 204722 323 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920796|ref|XP_012245315.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 167 -> 232 Target range: 204044 -> 204239 168 : TyrPheProTyrAsnThrSerIleSerProAsnPheGluLeuThrMetIleGlyGlnP : 187 |||::: |||::: ||| !!!!||| !!||||||:!!! !.!.:!! !|||. TyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnM 204045 : tattatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAA : 204102 188 : heValAlaThrValTyrAlaAlaAsnThrTyrThrAlaIleAspThrPheValValLe : 206 !.!.!.!! !|||! !||| ! !|||! !!.!:!!|||!.!||| !!! !:! etAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIl 204103 : TGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAAT : 204159 207 : uLeuIlePheHisValCysGlyGlnLeuSerAsnLeuArgAspAspLeuGlnLysIle : 225 !||||||.!!|||:!!||||||||||||..!||||||||| ||| !!!.||| eLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIle 204160 : ATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATA : 204216 226 : HisSerTyrAspLysLysAsp : 232 ! !! !!:! ||| LysHisLeuGluThrPheAsp 204217 : AAACATTTGGAAACTTTTGAT : 204239 vulgar: gi|815920796|ref|XP_012245315.1| 167 232 . KQ414617.1 204044 204239 + 119 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204045 204239 119 + . gene_id 1 ; sequence gi|815920796|ref|XP_012245315.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204045 204239 . + . KQ414617.1 exonerate:protein2genome:local exon 204045 204239 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204045 204239 119 + . alignment_id 1 ; Query gi|815920796|ref|XP_012245315.1| ; Align 204045 168 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 323 -> 394 Target range: 204727 -> 204940 324 : PheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuSerGluGlnCysSerGluI : 343 ||| :::::! !!!. ...... |||||| !:!!! !..!|||: PheProLeuTyrTyrLeuSerSerPheSerIleSerLeuSerIleLysSerGluGluV 204728 : tttcctctatACTACTTgtcttcattttcaatttctttgtCGATAAAGTCCGAAGAAG : 204785 344 : leGlyThrValSerTyrGluIleAspTrpTyrAsnLeuProAlaLysGluAlaTyrAs : 362 !! !..!!.!:!!|||||| !!!:|||! |||||| !:!!!!.:!!||| ! .. alTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsnLysAlaLysSe 204786 : TATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAACAAGGCGAAAAG : 204842 363 : pLeuIleLeuLeuIleSerIleSerGlnTyrProProLysLeuThrAlaGlyLysIle : 381 !|||||||||:!!!!::!!! :!!||| |||! ! |||||||||||||||::: rLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuThrAlaGlyLysLeu 204843 : TTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGcaggaaaatta : 204899 382 : IleGluLeuSerLeuAsnThrPheSerSerValAlaLys : 394 ... ::!!!!:!! ||||||!!!!:!|||.!!:!! PheProMetThrMetLeuThrPheCysAsnValThrGln 204900 : tttcctatGACGATGCTAACGTTTTGCAACGTCACTCAG : 204940 vulgar: gi|815911906|ref|XP_012241394.1| 323 394 . KQ414617.1 204727 204940 + 108 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204728 204940 108 + . gene_id 1 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204728 204940 . + . KQ414617.1 exonerate:protein2genome:local exon 204728 204940 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204728 204940 108 + . alignment_id 1 ; Query gi|815911906|ref|XP_012241394.1| ; Align 204728 324 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414667.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold102, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 306 -> 352 Target range: 801737 -> 801448 307 : LeuHisMetMetGlnMetArgSerSerLysProCysLysLeuThrAlaGlyGlyIleT : 326 |||!!.!!:|||..!|||||||||!!!! !|||||||||:!!||||||!.! !.!!| LeuGlnIleMetMetMetArgSerArgIleProCysLysIleThrAlaAlaLysPheT 801737 : CTTCAGATCATGATGATGCGCTCGAGGATACCATGCAAGATAACCGCCGCTAAATTCT : 801680 327 : yrGluMetAsnIleGluAsnPheGlyThr >>>> Target Intron 1 >>>> : 336 ||...|||::!:!:|||!:!|||..!! ! 151 bp yrSerMetSerLeuGluSerPheSerLys++ ++ 801679 : ACAGCATGTCCTTGGAGAGCTTCTCGAAGgt.........................ag : 801501 337 : ThrPheLysThrCysValSerTyrPheThrValLeuLeuSerLeuGlyAsp : 352 ..!.!!!..|||! ! !!|||||||||||||||||| !:!! ! !||| ValLeuSerThrSerPheSerTyrPheThrValLeuThrAlaThrLysAsp 801500 : GTACTCAGCACGTCTTTCTCCTACTTCACGGTCCTCACAGCCACCAAAGAC : 801449 vulgar: gi|815916412|ref|XP_012243371.1| 306 352 . KQ414667.1 801737 801448 - 103 M 29 87 5 0 2 I 0 147 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414667.1 exonerate:protein2genome:local gene 801449 801737 103 - . gene_id 1 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation + KQ414667.1 exonerate:protein2genome:local cds 801651 801737 . - . KQ414667.1 exonerate:protein2genome:local exon 801651 801737 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 801649 801650 . - . intron_id 1 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801500 801650 . - . intron_id 1 KQ414667.1 exonerate:protein2genome:local splice3 801500 801501 . - . intron_id 0 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801449 801499 . - . KQ414667.1 exonerate:protein2genome:local exon 801449 801499 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local similarity 801449 801737 103 - . alignment_id 1 ; Query gi|815916412|ref|XP_012243371.1| ; Align 801738 307 87 ; Align 801500 336 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920800|ref|XP_003492337.2| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 232 -> 285 Target range: 1395323 -> 1395482 233 : SerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProSe : 251 |||! !..!!!:||||||:!!||||||...||| !|||||| !:!!..!|||.. SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 252 : rGlnThrLysCysLeuLeuPheIleMetAsnArgSerThrArgProLeuCysLeuT : 270 !.!.! ! ! !:!!:!!.!!:!!|||! |||||| !|||! !||| :!!| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 271 : hrAlaGlyLysPheGlyIlePheSerMetGluLeuPheSerThrIle : 285 |||||||||||||| ! !!!.|||:!:||| !|||:!!!.!:!! hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnVal 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTA : 1395482 vulgar: gi|815920800|ref|XP_003492337.2| 232 285 . KQ414716.1 1395323 1395482 + 108 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395482 108 + . gene_id 1 ; sequence gi|815920800|ref|XP_003492337.2| ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395482 108 + . alignment_id 1 ; Query gi|815920800|ref|XP_003492337.2| ; Align 1395324 233 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815912130|ref|XP_012241492.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 1098 Query range: 0 -> 331 Target range: 891075 -> 892792 1 : MetSerMetTyrLeuAsnAlaIlePheAsnThrLysLys >>>> Target Intro : 14 :!:!!!||||||||||||!.!|||||||||! !!!.||| 264 bp LeuThrMetTyrLeuAsnGlyIlePheAsnMetAsnLys++ 891076 : CTCACGATGTACCTCAATGGGATTTTTAACATGAACAAGgt................. : 891117 15 : n 1 >>>> MetArgAspValLeuLeuPheIleLysAsnAsnHisAsnTyrTyrAla : 29 !!:!:!||||||||||||||||||||| !!||| !||||||||| ! ++IleLysAspValLeuLeuPheIleLysTyrAsnCysAsnTyrTyrMet 891118 : ........agATCAAAGATGTGCTTTTGTTTATCAAATACAATTGTAACTATTATATG : 891424 30 : AsnArgProGluLysLeuIleLeuArgTyrTyrAspValGlnGlyArgLysIleThrL : 49 |||!:!||||||!!.:::||||||:::||||||::: !||||||:::|||||||||| AsnGlnProGluAsnMetIleLeuLysTyrTyrGluArgGlnGlyLysLysIleThrL 891425 : AATCAACCAGAAAACatgattttaaaatattacgagAGAcagggaaaaaaaattacac : 891484 50 : euTyrTyrAla{L} >>>> Target Intron 2 >>>> {eu}TyrValTyrTh : 57 ||||||||.!!{!} 111 bp { !}|||||||||! euTyrTyrThr{S}++ ++{er}TyrValTyrMe 891485 : tttattACACT{T}gt.........................ag{CA}TACGTTTATAT : 891619 58 : rThrValValAlaTyrIleThrIleProAlaIleSerLeuLeuIleAspPheIleIle : 76 !|||:!!:!! !|||:!! !:!!||| !!!!:||||||:!!|||||| !:!!||| tThrLeuLeuIleTyrLeuLeuLeuProProMetSerLeuIleIleAspAspValIle 891620 : GACACTTTTAATCTACTTACTATTACCGCCCATGTCATTAATAATTGATGACGTTATA : 891676 77 : ProSerAsnHisSerGluGluLysSerPheProIleGluLeuAspTyrGlyValAspT : 96 !!||||||:!!|||:!!|||::!!:!||| !.!!|||||||||||||||||||||! SerSerAsnTyrSerGlnGluArgAsnPheLeuPheGluLeuAspTyrGlyValAspS 891677 : TCCTCAAATTATTCGCAAGAGCGAAACTTTTTATTCGAACTCGACTATGGCGTGGACA : 891736 97 : hrGlnHisTyrPheTyrTyrLeuPheIleHisSerTyrMetThrIleAlaMetIleAl : 115 ::|||...||||||||||||::: ||||||||||||||| !! !|||:!::!!|| erGlnGlnTyrPheTyrTyrIleSerIleHisSerTyrMetGlyThrAlaValValAl 891737 : GccaacaatatttttattatatatccATTCATTCGTACATGGGAACTGCTGTAGTTGC : 891793 116 : aAsnLeuIleAlaSerCysAspThrThrTyrMetLeuTyrAlaGlnHisGlyCysAla : 134 |||||||||||||!!!||||||||||||||||||||||||:!!||||||!.!! !||| aAsnLeuIleAlaThrCysAspThrThrTyrMetLeuTyrSerGlnHisAlaTyrAla 891794 : CAATTTAATTGCTACTTGCGATACTACCTACATGTTGTACTCTCAACATGCTTATGCT : 891850 135 : LeuPheAlaIleVal{Se} >>>> Target Intron 3 >>>> {r}TyrGluL : 143 |||||||||||||||{!!} 70 bp {!}! !:!!| LeuPheAlaIleVal{Cy}++ ++{s}SerGlnL 891851 : TTGTTTGCAATTGTA{TG}gt.........................ag{T}TCTCAAT : 891947 144 : euArgThrValHisIleLeuAspAlaSerSerLeuIleAsnLeuLysAspHisArgLe : 162 ||!:!||||||||||||||||||.!....:::|||||||||:::|||||| ! :: euLysThrValHisIleLeuAspThrGlyAsnLeuIleAsnValLysAspSerTyrIl 891948 : TGAAAACGGTACACATTTTGGATACgggtaatttaataaatgtgaAGGATAGTtatat : 892004 163 : uPheGluAsnTyrLysAsnIleGluLeuLeuProGluAspGluLysLysIleCysThr : 181 :...|||...||||||||||||||||||||||||! !!!::!!||||||:!!|||! ! eLeuGluLysTyrLysAsnIleGluLeuLeuProGlyGluGlnLysLysValCysArg 892005 : tcttgaaaaatataaaaatatagaattattGCCAGGGGAGCAAAAGAAAGTTTGTAGG : 892061 182 : LysLeuPheLeuCysIleLysGluTyrGlnAsnAlaIle{Ar} >>>> Target I : 195 ||||||!!. !||||||||||||:!!||||||||||||{..} 66 LysLeuLeuAsnCysIleLysGluHisGlnAsnAlaIle{Gl}++ 892062 : AAATTGTTGAACTGTATAAAGGAACACCAAAATGCCATA{GA}gt............. : 892107 196 : ntron 4 >>>> {g}TyrCysAsnLeuValGluSerLeuPheAlaLysSerIlePh : 209 bp {!}|||! !:!:!!:!!||||||||||||.!!|||||||||.! ++{u}TyrSerSerValLeuGluSerLeuPheThrLysSerIleLe 892108 : ............ag{A}TACTCAAGTGTTCTTGAATCATTATTCACTAAGTCCATACT : 892211 210 : eValGlnLeuPhePheAsnValValCysLeuSerIleAlaGlyValGlu >>>> Ta : 226 ! !|||||||||! !|||:!!:!!||||||||||||.!!||||||||| uSerGlnLeuPheCysAsnIleIleCysLeuSerIleThrGlyValGlu++ 892212 : TAGTCAACTGTTCTGTAATATCATCTGTCTTAGCATTACAGGAGTGGAAgt....... : 892264 227 : rget Intron 5 >>>> ThrValMetLysLeuGlyAsnAlaAlaAspThrIleAr : 238 70 bp ||||||||||||||||||||| !!.!|||! !||||| ++ThrValMetLysLeuGlyAsnIleGlyAspMetIleAr 892265 : ..................agACTGTAATGAAACTAGGTAATATAGGCGATATGATAAG : 892368 239 : gPheGlySerPheThrPheAlaGlnValAlaHisIlePheValLeuCysPheProGly : 257 |||||||||||||||||||||||||!.!!..|||||||||::::::|||.!!|||||| gPheGlySerPheThrPheAlaGlnAlaValHisIlePheLeuIleCysLeuProGly 892369 : ATTCGGATCATTTACGTTCGCACAAGCAGttcatatatttttgatttgCCTTCCTGGA : 892425 258 : GlnArgLeuLeuAsnHisSerGluGluValTyrAsnAla{Al} >>>> Target I : 271 |||||||||:!!||||||||||||:!!|||||| !.!!{||} 69 GlnArgLeuValAsnHisSerGluGlnValTyrAlaThr{Al}++ 892426 : CAAAGACTGGTGAATCATAGTGAACAGGTGTACGCCACG{gc}gt............. : 892471 272 : ntron 6 >>>> {a}CysAspAlaMetTrpTyrIlePheProLysLysCysHisAs : 285 bp {|}|||!!:!.!|||||||||! !.!!|||||||||||||||:: ++{a}CysGluValMetTrpTyrThrLeuProLysLysCysHisSe 892472 : ............ag{a}tGTGAGGTAATGTGGTACACACTTCCTAAGAAGTGTCACag : 892578 286 : nLeuTyrLysPheLeuLeuAlaArgThrLeuIlePheSerLysIleThrAlaPheLys : 304 :||||||||||||||||||||||||!:!! !! ! !|||||||||||||||!:!||| rLeuTyrLysPheLeuLeuAlaArgSerSerLysProSerLysIleThrAlaTyrLys 892579 : tttatataaatttttgctGGCAAGAAGTTCGAAACCTAGTAAAATAACAGCTTATAAA : 892635 305 : ValAlaThrMetSerMetGluThrPheLeuAla >>>> Target Intron 7 >> : 316 :!!||| !!|||!!!|||||||||||||||||| 74 bp LeuAlaProMetThrMetGluThrPheLeuAla++ 892636 : CTAGCACCCATGACGATGGAGACGTTTCTCgcggt....................... : 892673 317 : >> IleIleGlnThrAlaMetSerTyrPheThrValLeuLeuSerThrThr : 331 |||||||||||||||||||||||||||||||||||||||||||||||| ++IleIleGlnThrAlaMetSerTyrPheThrValLeuLeuSerThrThr 892674 : ..agattATTCAAACTGCAATGAGTTATTTTACTGTACTATTATCAACAACA : 892792 vulgar: gi|815912130|ref|XP_012241492.1| 0 331 . KQ414735.1 891075 892792 + 1098 M 13 39 5 0 2 I 0 260 3 0 2 M 39 117 S 0 1 5 0 2 I 0 107 3 0 2 S 1 2 M 86 258 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 54 162 S 0 2 5 0 2 I 0 62 3 0 2 S 1 1 M 30 90 5 0 2 I 0 66 3 0 2 M 45 135 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 44 132 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 891076 892792 1098 + . gene_id 1 ; sequence gi|815912130|ref|XP_012241492.1| ; gene_orientation + KQ414735.1 exonerate:protein2genome:local cds 891076 891114 . + . KQ414735.1 exonerate:protein2genome:local exon 891076 891114 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local splice5 891115 891116 . + . intron_id 1 ; splice_site "GT" KQ414735.1 exonerate:protein2genome:local intron 891115 891378 . + . intron_id 1 KQ414735.1 exonerate:protein2genome:local splice3 891377 891378 . + . intron_id 0 ; splice_site "AG" KQ414735.1 exonerate:protein2genome:local cds 891379 891496 . + . KQ414735.1 exonerate:protein2genome:local exon 891379 891496 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local splice5 891497 891498 . + . intron_id 2 ; splice_site "GT" KQ414735.1 exonerate:protein2genome:local intron 891497 891607 . + . intron_id 2 KQ414735.1 exonerate:protein2genome:local splice3 891606 891607 . + . intron_id 1 ; splice_site "AG" KQ414735.1 exonerate:protein2genome:local cds 891608 891869 . + . KQ414735.1 exonerate:protein2genome:local exon 891608 891869 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local splice5 891870 891871 . + . intron_id 3 ; splice_site "GT" KQ414735.1 exonerate:protein2genome:local intron 891870 891939 . + . intron_id 3 KQ414735.1 exonerate:protein2genome:local splice3 891938 891939 . + . intron_id 2 ; splice_site "AG" KQ414735.1 exonerate:protein2genome:local cds 891940 892104 . + . KQ414735.1 exonerate:protein2genome:local exon 891940 892104 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local splice5 892105 892106 . + . intron_id 4 ; splice_site "GT" KQ414735.1 exonerate:protein2genome:local intron 892105 892170 . + . intron_id 4 KQ414735.1 exonerate:protein2genome:local splice3 892169 892170 . + . intron_id 3 ; splice_site "AG" KQ414735.1 exonerate:protein2genome:local cds 892171 892261 . + . KQ414735.1 exonerate:protein2genome:local exon 892171 892261 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local splice5 892262 892263 . + . intron_id 5 ; splice_site "GT" KQ414735.1 exonerate:protein2genome:local intron 892262 892331 . + . intron_id 5 KQ414735.1 exonerate:protein2genome:local splice3 892330 892331 . + . intron_id 4 ; splice_site "AG" KQ414735.1 exonerate:protein2genome:local cds 892332 892468 . + . KQ414735.1 exonerate:protein2genome:local exon 892332 892468 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local splice5 892469 892470 . + . intron_id 6 ; splice_site "gt" KQ414735.1 exonerate:protein2genome:local intron 892469 892537 . + . intron_id 6 KQ414735.1 exonerate:protein2genome:local splice3 892536 892537 . + . intron_id 5 ; splice_site "ag" KQ414735.1 exonerate:protein2genome:local cds 892538 892670 . + . KQ414735.1 exonerate:protein2genome:local exon 892538 892670 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local splice5 892671 892672 . + . intron_id 7 ; splice_site "gt" KQ414735.1 exonerate:protein2genome:local intron 892671 892744 . + . intron_id 7 KQ414735.1 exonerate:protein2genome:local splice3 892743 892744 . + . intron_id 6 ; splice_site "ag" KQ414735.1 exonerate:protein2genome:local cds 892745 892792 . + . KQ414735.1 exonerate:protein2genome:local exon 892745 892792 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 891076 892792 1098 + . alignment_id 1 ; Query gi|815912130|ref|XP_012241492.1| ; Align 891076 1 39 ; Align 891379 14 117 ; Align 891610 54 258 ; Align 891941 141 162 ; Align 892172 196 90 ; Align 892332 226 135 ; Align 892539 272 132 ; Align 892745 316 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815912130|ref|XP_012241492.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 272 -> 330 Target range: 888475 -> 889153 273 : AspAlaMetTrpTyrIlePheProLysLysCysHisAsnLeuTyrLysPheLeuLeuA : 292 :!!..!:!:||||||! ||| !..!! !! ||| !||||||::!||||||:!! AsnCysLeuTrpTyrThrPheTyrSerIleSerHisValLeuTyrArgPheLeuIleM 888476 : AACTGCTTATGGTACACGTTCTACTCGATATCGCACGTTCTGTATCGATTCTTAATCA : 888533 293 : laArgThrLeuIlePheSerLysIleThrAlaPheLysValAlaThrMetSerMetGl : 311 !!.!||||||! ! !!!!:!!:!:! !|||!!.|||:!! ! !!:!!!:!||||| etAsnThrLeuLysProCysGluLeuIleAlaLeuLysIleIleProLeuAsnMetGl 888534 : TGAACACCTTAAAACCTTGCGAACTGATTGCTTTAAAGATAATACCGCTGAACATGGA : 888590 312 : uThrPheLeuAla >>>> Target Intron 1 >>>> IleIleGlnThrAlaM : 321 ||||||||||:!! 504 bp :!!! !|||||||||! uThrPheLeuSer++ ++ValThrGlnThrAlaI 888591 : AACGTTTCTGTCGgt.........................agGTTACACAGACTGCCA : 889124 322 : etSerTyrPheThrValLeuLeuSerThr : 330 !:|||||||||||||||||| !|||||| leSerTyrPheThrValLeuSerSerThr 889125 : TATCGTACTTCACCGTTCTAAGCTCGACG : 889153 vulgar: gi|815912130|ref|XP_012241492.1| 272 330 . KQ414735.1 888475 889153 + 133 M 43 129 5 0 2 I 0 500 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 888476 889153 133 + . gene_id 2 ; sequence gi|815912130|ref|XP_012241492.1| ; gene_orientation + KQ414735.1 exonerate:protein2genome:local cds 888476 888604 . + . KQ414735.1 exonerate:protein2genome:local exon 888476 888604 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local splice5 888605 888606 . + . intron_id 1 ; splice_site "GT" KQ414735.1 exonerate:protein2genome:local intron 888605 889108 . + . intron_id 1 KQ414735.1 exonerate:protein2genome:local splice3 889107 889108 . + . intron_id 0 ; splice_site "AG" KQ414735.1 exonerate:protein2genome:local cds 889109 889153 . + . KQ414735.1 exonerate:protein2genome:local exon 889109 889153 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 888476 889153 133 + . alignment_id 2 ; Query gi|815912130|ref|XP_012241492.1| ; Align 888476 273 129 ; Align 889109 316 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815912130|ref|XP_012241492.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 49 -> 138 Target range: 887504 -> 887768 50 : TyrTyrAlaLeuTyrValTyrThrThrValValAlaTyrIleThrIleProAlaIleS : 69 !:!! ! !:!!||||||! !! !:!!!.!..! !|||.!!|||:!! :!!|||: PheSerIleValTyrValCysIleSerAlaThrMetTyrPheThrLeu---SerIleA 887505 : TTCTCTATAGTTTACGTCTGCATATCGGCGACAATGTATTTCACACTT---TCGATTG : 887559 70 : erLeuLeuIleAspPheIleIleProSerAsnHisSerGluGluLysSerPheProIl : 88 !!:!!:!!||| ! !:!: !!.!|||!..!!!||| !:!..! !! ! laValValIlePheGluGluLeuAsnLysAsnArgThrGluProArgGlnThrLeuTy 887560 : CCGTGGTCATCTTCGAGGAATTGAATAAAAACCGGACCGAACCCAGACAGACTCTATA : 887616 89 : eGluLeuAspTyrGlyValAspThrGlnHisTyrPheTyrTyrLeuPheIleHisSer : 107 ! !:!!!!:||| !:!!|||:::::: ||||||||| :!! !|||!!! rProValGluTyrHisIleAspSerGluLysTyrPheTyrLeuIleThrAlaHisCys 887617 : CCCAGTGGAGTACCACATCgacagtgaaaaatatttttacctgATTACAGCTCATTGT : 887673 108 : TyrMetThrIleAlaMetIleAlaAsnLeuIleAlaSerCysAspThrThrTyrMetL : 127 ||| :!!! !!.!:!::!! ! !! !! !!.! ! !||||||! !|||!!:: TyrAlaSerThrValLeuLeuLeuLeuGlnThrValValHisAspThrMetTyrIleV 887674 : TACGCCTCGACAGTACTTCTTCTGCTTCAAACTGTCGTACACGACACAATGTACATTG : 887733 128 : euTyrAlaGlnHisGlyCysAlaLeuPheAlaIle : 138 !! !.!||||||||||||||||||||||||:!! alLeuValGlnHisGlyCysAlaLeuPheAlaVal 887734 : TTCTGGTCCAACATGGCTGCGCTTTATTCGCAGTT : 887768 vulgar: gi|815912130|ref|XP_012241492.1| 49 138 . KQ414735.1 887504 887768 + 123 M 16 48 G 1 0 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 887505 887768 123 + . gene_id 3 ; sequence gi|815912130|ref|XP_012241492.1| ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 887505 887768 . + . KQ414735.1 exonerate:protein2genome:local exon 887505 887768 . + . insertions 0 ; deletions 1 KQ414735.1 exonerate:protein2genome:local similarity 887505 887768 123 + . alignment_id 3 ; Query gi|815912130|ref|XP_012241492.1| ; Align 887505 50 48 ; Align 887553 67 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815912130|ref|XP_012241492.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 143 Query range: 46 -> 145 Target range: 14175 -> 13878 47 : IleThrLeuTyrTyrAlaLeuTyrValTyrThrThrValValAlaTyrIleThrIlePro : 66 |||..! !|||! !:!! !!!.! !..! !|||:!! !!:!:!:|||! ||| IleValLysTyrSerIleValAsnAlaIleValCysValIleLeuPheValThrThrPro 14175 : ATTGTCAAATATTCGATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGACCACGCCG : 14118 67 : AlaIleSerLeuLeuIleAspPheIleIleProSerAsnHisSerGluGluLysSerPhe : 86 !.!! ! !!! !:!!:!:|||.!!:!!:!!|||!.!|||.!.|||..!!!: !:!!!:! ValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyr 14117 : GTGACACCGCATATTTTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTAC : 14058 87 : ProIleGluLeuAspTyrGlyValAspThrGlnHisTyrPheTyrTyrLeuPheIleHis : 106 ! ! ! ! !!||| !..!||| !!!. ! ||| ! |||:!!.!!! ||| IleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHis 14057 : ATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCAC : 13998 107 : SerTyrMetThrIleAlaMetIleAlaAsnLeuIleAlaSerCysAspThrThrTyrMet : 126 ! ! ..!||| !:!!:!: ! !!:!! !!.!:!!|||||||||!:!|||!!: MetAlaSerValIleLeuValValPheTyrValTyrValAlaCysAspThrSerTyrIle 13997 : ATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATA : 13938 127 : LeuTyrAlaGlnHisGlyCysAlaLeuPheAlaIleValSerTyrGluLeuArgThr : 145 ! ! !!.!||||||||||||!.!|||!!.|||:!: !.!. ::::::|||::: TyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly***LysIleArgSer 13937 : TACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaattcgatcg : 13879 vulgar: gi|815912130|ref|XP_012241492.1| 46 145 . KQ414772.1 14175 13878 - 143 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13879 14175 143 - . gene_id 1 ; sequence gi|815912130|ref|XP_012241492.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13879 14175 . - . KQ414772.1 exonerate:protein2genome:local exon 13879 14175 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13879 14175 143 - . alignment_id 1 ; Query gi|815912130|ref|XP_012241492.1| ; Align 14176 47 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815912130|ref|XP_012241492.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 50 -> 142 Target range: 18072 -> 17796 51 : TyrAlaLeuTyrValTyrThrThrValValAlaTyrIleThrIleProAlaIleSerLeu : 70 !:! !!:!! !!!.!|||! ! ! ! !! !!:!||| !:!:||| ! !!!! ! PheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpSerThrArg 18072 : TTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGTCGACCCGA : 18015 71 : LeuIleAspPheIleIleProSerAsnHisSerGluGluLysSerPheProIleGluLeu : 90 |||:!::!!! !! !!..!||| !!! !... !..!||| !||| ! LeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuGlnPheValIleProGly 18014 : TTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGA : 17955 91 : AspTyrGlyValAspThrGlnHisTyrPheTyrTyrLeuPheIleHisSerTyrMetThr : 110 !!||| !|||||| ! !.!.|||!:!||||||:!!.!.:!!|||.!! ||| TyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThr 17954 : TATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACA : 17895 111 : IleAlaMetIleAlaAsnLeuIleAlaSerCysAspThrThrTyrMetLeuTyrAlaGln : 130 ||| !!!::!!!.! :!! !..!:!!|||||||||!:!||||||:!! !.!||| IleLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGln 17894 : ATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAA : 17835 131 : HisGlyCysAlaLeuPheAlaIleValSerTyrGlu : 142 ||| !|||!.!|||||||||:!:!.!.!!! ||| HisThrCysGlyLeuPheAlaValAlaGly***Glu 17834 : CACACTTGCGGACTGTTCGCCGTGGCCGGGTGAGAA : 17797 vulgar: gi|815912130|ref|XP_012241492.1| 50 142 . KQ414772.1 18072 17796 - 139 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17797 18072 139 - . gene_id 2 ; sequence gi|815912130|ref|XP_012241492.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17797 18072 . - . KQ414772.1 exonerate:protein2genome:local exon 17797 18072 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17797 18072 139 - . alignment_id 2 ; Query gi|815912130|ref|XP_012241492.1| ; Align 18073 51 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 143 Query range: 102 -> 179 Target range: 20556 -> 20325 103 : PheIleIleIleProLeuSerProValIleLeuAspIleIleSerProLeuAsnGluThr : 122 |||:!! !:!:|||!!!:!!|||:!!|||||||||||| !:!!|||||||||:!!||| PheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsnLysThr 20556 : TTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAACAAAACG : 20499 123 : ArgHisArgGluGlnMetPheArgValThrTyrPheLeuAspGluAspGlnTyrPheTyr : 142 ||| ! |||! ! :!:!:!! !!.! !|||!:::!!||| !!:||||||!:! ArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMet 20498 : AGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATG : 20439 143 : ProIleTyrPheHisSerLeuTrpCysAlaPheIleIleThrMetIleAlaValThrIle : 162 !!!: .!.|||! !:!!!:: !.!.!!!!::!! !:!:||| ! !.!! ! IleMetIleIleHisIleMetPheValValIleMetValCysValIlePheCysAlaCys 20438 : ATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGTGCTTGC : 20379 163 : AspSerLeuTyrIleGlnIleValHisHisAspSerAlaLeuPheAlaIle : 179 |||! ! !|||:!: ! !|||!!.|||! !!!!.!|||!!.|||:!! AspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaVal 20378 : GACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: gi|815916412|ref|XP_012243371.1| 102 179 . KQ414772.1 20556 20325 - 143 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20556 143 - . gene_id 1 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20556 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20556 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20326 20556 143 - . alignment_id 1 ; Query gi|815916412|ref|XP_012243371.1| ; Align 20557 103 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 138 Query range: 96 -> 181 Target range: 38024 -> 37769 97 : LeuSerCysMetSerGlyPheIleIleIleProLeuSerProValIleLeuAspIleIle : 116 |||! !||| ! !|||! ! !:!: !!:!!!!!||| !:!!||||||:!!||| LeuPheCysTyrValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIle 38024 : CTGTTTTGCTACGTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATT : 37967 117 : SerProLeuAsnGluThrArgHisArgGluGlnMetPheArgValThrTyrPheLeuAsp : 136 |||||| !||||||:!!||| !!!: !!:!:!! !!.! !||| !|||||| SerProLysAsnGluSerArgGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAsp 37966 : TCACCGAAAAACGAATCGCGTGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGAC : 37907 137 : GluAspGlnTyrPheTyrProIleTyrPheHisSerLeuTrpCysAlaPheIleIleThr : 156 |||!!::!!:!!!:!||| !:!: !|||! !|||!! ! !:!!:!: ! GluGluGluHisTyrTyrIleLeuMetGlyHisMetLeuCysValIleThrValValPhe 37906 : GAGGAGGAACATTATTACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTT : 37847 157 : MetIleAlaValThrIleAspSerLeuTyrIleGlnIleValHisHisAspSerAlaLeu : 176 .!.:!: !:!!:!! !|||!!!:!!|||!!:...||||||!!.|||! !!!!.!||| PheValTyrIleSerCysAspThrIleTyrMetSerIleValGlnHisAlaCysGlyLeu 37846 : TTCGTGTACATCTCCTGTGACACGATCTACATGAGCATCGTTCAACACGCGTGCGGATTA : 37787 177 : PheAlaIleCysGly : 181 .!. !:!!! !||| LeuAsnValSerGly 37786 : CTGAACGTCTCTGGG : 37770 vulgar: gi|815916412|ref|XP_012243371.1| 96 181 . KQ414772.1 38024 37769 - 138 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37770 38024 138 - . gene_id 2 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37770 38024 . - . KQ414772.1 exonerate:protein2genome:local exon 37770 38024 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 37770 38024 138 - . alignment_id 2 ; Query gi|815916412|ref|XP_012243371.1| ; Align 38025 97 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 133 Query range: 96 -> 190 Target range: 24431 -> 24149 97 : LeuSerCysMetSerGlyPheIleIleIleProLeuSerProValIleLeuAspIleIle : 116 :!!! !||| ! !|||! ! !:!: !!:!!!!!||| !:!!||||||:!!||| IlePheCysTyrValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIle 24431 : ATCTTCTGCTACGTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATT : 24374 117 : SerProLeuAsnGluThrArgHisArgGluGlnMetPheArgValThrTyrPheLeuAsp : 136 |||||| !||||||:!!||| !! !!:!:!! !!.!!.!||| !:!!||| SerProLysAsnGluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAsp 24373 : TCGCCGAAAAACGAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGAC : 24314 137 : GluAspGlnTyrPheTyrProIleTyrPheHisSerLeuTrpCysAlaPheIleIleThr : 156 |||!!::!!:!!!:!||| !:!: !|||! !|||! ! !:!!:!: ! GluGluGluHisTyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhe 24313 : GAAGAGGAGCATTACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTT : 24254 157 : MetIleAlaValThrIleAspSerLeuTyrIleGlnIleValHisHisAspSerAlaLeu : 176 .!.:!! !:!!:!! !|||!!!:!!|||!!:.!.||||||!!.|||! !!!!.!||| PheValTyrIleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeu 24253 : TTCGTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTA : 24194 177 : PheAlaIleCysGlyGlnAlaLeuIleThrAlaArgLysSer : 190 !!. !:!!! !||| !!|||:!!.!!! !..! !..!||| LeuAsnLeuSerGly***AlaIlePheArgCysTyrSerSer 24193 : TTGAACCTCTCTGGGTAAGCAATTTTCAGATGTTACTCGAGT : 24150 vulgar: gi|815916412|ref|XP_012243371.1| 96 190 . KQ414772.1 24431 24149 - 133 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24150 24431 133 - . gene_id 3 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24150 24431 . - . KQ414772.1 exonerate:protein2genome:local exon 24150 24431 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 24150 24431 133 - . alignment_id 3 ; Query gi|815916412|ref|XP_012243371.1| ; Align 24432 97 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 96 -> 181 Target range: 29610 -> 29355 97 : LeuSerCysMetSerGlyPheIleIleIleProLeuSerProValIleLeuAspIleIle : 116 :!!! !||| ! !|||! ! !:!: !!:!!!!!||| !:!!||||||:!!||| IlePheCysTyrValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIle 29610 : ATCTTCTGCTACGTTATATTCACCTCAGTGGCGATAACCCCTCGTGTTCTCGACCTTATT : 29553 117 : SerProLeuAsnGluThrArgHisArgGluGlnMetPheArgValThrTyrPheLeuAsp : 136 |||||| !||||||:!!||| !! !!:!:!! !!.! !||| !|||||| SerProLysAsnGluSerArgGlyValGlyPheIleTyrProAlaTyrTyrGlyLeuAsp 29552 : TCGCCGAAAAACGAATCGCGCGGAGTGGGCTTCATTTATCCTGCATACTACGGTCTTGAC : 29493 137 : GluAspGlnTyrPheTyrProIleTyrPheHisSerLeuTrpCysAlaPheIleIleThr : 156 |||!!::!!:!!!:!||| !:!: !|||! !|||! ! !:!!:!: ! GluGluGluHisTyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhe 29492 : GAAGAGGAGCATTACTACTATCTGATGGGTCACATGCTTTCCGTGATAACCGTCGTGTTT : 29433 157 : MetIleAlaValThrIleAspSerLeuTyrIleGlnIleValHisHisAspSerAlaLeu : 176 .!.:!! !:!!:!! !|||!!!:!!|||!!:.!.:!!|||!!.|||! !!!!.!||| PheValTyrIleSerCysAspThrIleTyrMetAsnValValGlnHisAlaCysGlyLeu 29432 : TTCGTCTACATCTCCTGTGACACGATCTATATGAATGTCGTGCAACACGCGTGTGGATTA : 29373 177 : PheAlaIleCysGly : 181 !!. !:!!! !||| LeuAsnValSerGly 29372 : TTGAACGTCTCTGGG : 29356 vulgar: gi|815916412|ref|XP_012243371.1| 96 181 . KQ414772.1 29610 29355 - 130 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29356 29610 130 - . gene_id 4 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29356 29610 . - . KQ414772.1 exonerate:protein2genome:local exon 29356 29610 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 29356 29610 130 - . alignment_id 4 ; Query gi|815916412|ref|XP_012243371.1| ; Align 29611 97 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 99 -> 170 Target range: 45949 -> 45736 100 : MetSerGlyPheIleIleIleProLeuSerProValIleLeuAspIleIleSerProLeu : 119 :!!|||! !||| !! ! ||||||! !||| !!|||||||||:!!|||||||||||| ValSerValPheSerThrAlaProLeuIleProPheIleLeuAspLeuIleSerProLeu 45949 : GTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTGGACCTAATTTCACCTTTG : 45892 120 : AsnGluThrArgHisArgGluGlnMetPheArgValThrTyrPheLeuAspGluAspGln : 139 ||||||:!!|||! ||| ! ! !:!!:!!.! !! !!:!!!!:!! !|||.!. AsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAsp 45891 : AACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGAC : 45832 140 : TyrPheTyrProIleTyrPheHisSerLeuTrpCysAlaPheIleIleThrMetIleAla : 159 |||!:!||| !:!! :!!!!! ! !||| ! !!: ! !:!::!: ! TyrTyrTyrTyrValValGlyTyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeu 45831 : TACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTT : 45772 160 : ValThrIleAspSerLeuTyrIleGlnIleVal : 170 ||| ! !|||! !:!! |||!!.:!!||| ValGlyAlaAspIleIleMetIleHisLeuVal 45771 : GTCGGCGCTGACATTATTATGATACATCTTGTA : 45737 vulgar: gi|815916412|ref|XP_012243371.1| 99 170 . KQ414772.1 45949 45736 - 113 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45737 45949 113 - . gene_id 5 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45737 45949 . - . KQ414772.1 exonerate:protein2genome:local exon 45737 45949 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45737 45949 113 - . alignment_id 5 ; Query gi|815916412|ref|XP_012243371.1| ; Align 45950 100 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 291 -> 347 Target range: 45002 -> 44736 292 : TyrArgSerMetTrpTyrAsnMetProIleAsnValGlnArgValLeuHisMetMetGln : 311 |||..!:!!!!:||||||!!.|||||| !!!.:!!||| !:!! ! !:!: !! TyrGluAlaIleTrpTyrLysMetProProLysLeuGlnLeuLeuAspValValAlaLeu 45002 : TACGAGGCAATTTGGTATAAGATGCCACCTAAACTTCAGTTGCTAGACGTTGTAGCGCTT : 44945 312 : MetArgSerSerLysProCysLysLeuThrAlaGlyGlyIleTyrGluMetAsnIleGlu : 331 ! !:!||| !! ||| !! !|||||||||||||||:!: ..!:!::!!:!:.!. ArgLysSerLeuThrProProIleLeuThrAlaGlyGlyLeuMetArgLeuAspLeuAsn 44944 : AGAAAAAGCCTAACTCCTCCTATACTGACGGCGGGAGGGTTGATGCGGTTAGATTTGAAT : 44885 332 : AsnPheGlyThr >>>> Target Intron 1 >>>> ThrPheLysThrCysValS : 342 ::!|||!.! ! 98 bp .!.|||.!!||||||| SerPheAlaGln++ ++LeuLeuLysAlaCysValS 44884 : TCTTTCGCACAGgt.........................agctgCTGAAAGCTTGCGTCT : 44754 343 : erTyrPheThrValLeu : 347 |||||!:!|||!.!||| erTyrTyrThrAlaLeu 44753 : CGTATTATACGGCACTG : 44737 vulgar: gi|815916412|ref|XP_012243371.1| 291 347 . KQ414772.1 45002 44736 - 102 M 44 132 5 0 2 I 0 94 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 44737 45002 102 - . gene_id 6 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 44871 45002 . - . KQ414772.1 exonerate:protein2genome:local exon 44871 45002 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 44869 44870 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 44773 44870 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 44773 44774 . - . intron_id 0 ; splice_site "ag" KQ414772.1 exonerate:protein2genome:local cds 44737 44772 . - . KQ414772.1 exonerate:protein2genome:local exon 44737 44772 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 44737 45002 102 - . alignment_id 6 ; Query gi|815916412|ref|XP_012243371.1| ; Align 45003 292 132 ; Align 44773 336 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927462|ref|XP_012248265.1| PREDICTED: odorant receptor 49a-like, partial [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 77 -> 196 Target range: 14205 -> 13851 78 : LeuGluGluValThrIleArgGlySerLysMetAlaLysLeuTyrArgAsnThrLeuMet : 97 |||.!.!!: !|||:!! ! !!!! ! !!:!.!|||! !! ! ! !.! !!!: LeuAsnAspGlnThrValTyrPheThrTyrIleValLysTyrSerIleValAsnAlaIle 14205 : TTAAACGACCAAACTGTTTATTTTACGTACATTGTCAAATATTCGATAGTGAACGCGATC : 14148 98 : ValPheMetValLeuPheLeuLeuValProLeuIleSerProMetMetAspIleLeuLeu : 117 |||! !:!::!!||||||:!! !..!|||:!!! ! !!! !!!::!!|||||||||||| ValCysValIleLeuPheValThrThrProValThrProHisIleLeuAspIleLeuLeu 14147 : GTTTGTGTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATTTTGGACATTTTACTA : 14088 118 : ProLeuAsnGluThrArgProArgGlnGlnLeuLeuAsnValAsnTyrValLeuPheAsp : 137 ||| !||||||:!!||| ! ! ! ! :!!! ! !.! ||| !!!! !||| ProLysAsnGluSerArgAspValAlaTyrIleTyrProAla---TyrTyrPheThrAsp 14087 : CCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCC---TATTATTTCACCGAC : 14031 138 : SerHisAsnTyrPhePheCysValTyrLeuGlnLeuSerTrpAlaAlaIleValValSer : 157 ..!|||!!.||| ! ! ! !:!! ! !!!.:!!:!!! !.! !:!!||||||! ! GluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPhe 14030 : GAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTT : 13971 158 : IleSerIleValThrValAspSerLeuLeuMetLeuIleValHisHisAsnSerGlyLeu : 177 ! ! !|||.!! !|||!!! !! !!!:! !:!!|||!!.|||..!!!!|||||| TyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeu 13970 : TACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTG : 13911 178 : PheIleValCysGlyHisGlnIleGlnLysLysThrArgHisLeuAsnSerPheThr : 196 !!. !|||! !||| :::|||:::...|||... |||||| |||::: LeuAlaValSerGly***LysIleArgSerLysAsnSer***LeuAsnProPheSer 13910 : TTGGCCGTGTCCGGgtaaaaaattcgatcgaaaaattcgtagcttaaccctttcagt : 13852 vulgar: gi|815927462|ref|XP_012248265.1| 77 196 . KQ414772.1 14205 13851 - 121 M 54 162 G 1 0 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13852 14205 121 - . gene_id 1 ; sequence gi|815927462|ref|XP_012248265.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13852 14205 . - . KQ414772.1 exonerate:protein2genome:local exon 13852 14205 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 13852 14205 121 - . alignment_id 1 ; Query gi|815927462|ref|XP_012248265.1| ; Align 14206 78 162 ; Align 14044 133 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 485 Query range: 0 -> 189 Target range: 17847 -> 16519 1 : MetValLeuValGlnHisAlaCysGlyLeuLeuIleValThr{Gl} >>>> Target : 15 ||||||||||||||||||.!!|||||||||!!! !|||.!!{||} 79 MetValLeuValGlnHisThrCysGlyLeuPheAlaValAla{Gl}++ 17847 : ATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCC{GG}gt............ : 17801 16 : Intron 1 >>>> {y}TyrArgTyrLysAsnAlaIle<->AsnAspLeuSerPheAsn : 28 bp {|}||||||!:!||||||:!!||| .!.||| !||| ! !!. ++{y}TyrArgPheLysAsnSerIleArgGluAspAsnSerValLys 17800 : .............ag{A}TACCGCTTCAAGAATTCAATTCGCGAGGACAATAGCGTGAAG : 17684 29 : ThrLysAspSerGluLysLysAlaLysGluThrTyrGluArgValArgPheSerIleGln : 48 !||| !!! !!!: ! !.!!||||||.!!|||:!!!.!!.! !!|||||||||||| GlyLysTyrPheAspHisTrpThrLysGluAlaTyrLysAsnAlaCysPheSerIleGln 17683 : GGGAAGTATTTCGACCACTGGACGAAAGAGGCGTACAAGAACGCGTGTTTCTCCATTCAG : 17624 49 : AlaHisGlnArgAlaIle{Me} >>>> Target Intron 2 >>>> {t}PheLeu : 57 !.!|||||||||||||||{! } 113 bp { }|||:!! GlyHisGlnArgAlaIle{As}++ ++{n}PheVal 17623 : GGACATCAACGTGCTATA{AA}gt.........................ag{C}TTTGTA : 17484 58 : GluLysIleGluSerThrHisValThrTyrLeuPheMetCysMetGlyIleValValLeu : 77 :!!:!!|||||| !! !|||! !||||||||||||! |||:!:|||:!:|||:!!||| LysGluIleGluArgGlyHisAspThrTyrLeuPheThrCysLeuGlyLeuValIleLeu 17483 : AAGGAAATTGAACGCGGCCATGACACGTACCTTTTCACCTGCTTAGGCTTGGTGATTCTA : 17424 78 : CysValSerIleThrMetAlaGln >>>> Target Intron 3 >>>> IleAlaT : 88 ||| !!|||||||||:!! !:!! 81 bp :!:::!| CysPheSerIleThrLeuIleLys++ ++LeuSerT 17423 : TGCTTCAGTATTACTCTGATCAAGgt.........................agCTGAGTA : 17310 89 : hrMetGluIleCysValAspPheTyrLysPheIleSerPheLeuValIleGlnPheLeuH : 108 || !!!:.!! !:!!|||||||||!:!!:! !|||||| !:!! !|||.!.:!!| hrSerAspPheAspIleAspPheTyrArgTyrCysSerPheThrLeuCysGlnLeuMetH 17309 : CGTCGGATTTCGACATAGACTTCTACAGATATTGCAGTTTTACGTTGTGTCAACTGATGC : 17250 109 : isLeuPheCysLeuThrMetGlnGlyGlnPheIleIleAsnSerSerAspGluIleTyrA : 128 |||||||| !:!!! !:!:||||||||||||:!::!::!!|||!!!!!:..!|||:!!! isLeuPheValIleMetLeuGlnGlyGlnPheValLeuAspSerCysGluArgIleHisG 17249 : ACCTGTTCGTTATCATGCTTCAGGGACAGTTCGTGCTGGATTCGTGCGAGAGAATTCACG : 17190 129 : spAla{Il} >>>> Target Intron 4 >>>> {e}TyrGluAlaSerTrpTyrA : 137 !:|||{||} 402 bp {|}||||||:!!! !||||||! luAla{Il}++ ++{e}TyrGluSerLeuTrpTyrT 17189 : AGGCG{AT}gt.........................ag{A}TACGAATCATTATGGTACA : 16761 138 : snThrAsnProLysThrGlnAlaLeuTyrLeuLeuAlaLeuArgArgSerLeuThrProC : 157 ..!:!::! !!||||||||||||||||||:!!:!!||||||||||||!:!||||||||| hrSerSerSerLysThrGlnAlaLeuTyrValValAlaLeuArgArgAsnLeuThrProT 16760 : CAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCGTTACGAAGAAACCTAACACCTA : 16701 158 : ysTyrLeuThrAlaGlyGlyLeuIleArgLeuAsnMetGluSerPheSerGlu >>>> : 175 !! !||||||||||||||||||:!:!:!|||||||||:!!||||||:!!||| hrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMetGlnSerPheAlaGlu++ 16700 : CCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATGCAAAGCTTCGCAGAGgt..... : 16645 176 : Target Intron 5 >>>> ValIleLysLeuCysValSerTyrTyrThrValLeuAr : 187 83 bp |||:!!|||:!!! !|||||||||||||||||||||!: ++ValValLysMetSerValSerTyrTyrThrValLeuLy 16644 : ....................agGTGGTAAAAATGTCCGTTTCCTATTATACGGTGTTGAA : 16528 188 : gSerThr : 189 !!!!||| sThrThr 16527 : GACAACG : 16520 vulgar: gi|815925234|ref|XP_012247254.1| 0 189 . KQ414772.1 17847 16519 - 485 M 14 42 S 0 2 5 0 2 I 0 75 3 0 2 S 1 1 M 7 21 G 0 3 M 32 96 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 30 90 5 0 2 I 0 77 3 0 2 M 44 132 S 0 2 5 0 2 I 0 398 3 0 2 S 1 1 M 44 132 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 16520 17847 485 - . gene_id 1 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 17804 17847 . - . KQ414772.1 exonerate:protein2genome:local exon 17804 17847 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 17802 17803 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 17725 17803 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 17725 17726 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 17602 17724 . - . KQ414772.1 exonerate:protein2genome:local exon 17602 17724 . - . insertions 3 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 17600 17601 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 17489 17601 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 17489 17490 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 17398 17488 . - . KQ414772.1 exonerate:protein2genome:local exon 17398 17488 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 17396 17397 . - . intron_id 3 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 17317 17397 . - . intron_id 3 KQ414772.1 exonerate:protein2genome:local splice3 17317 17318 . - . intron_id 2 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 17183 17316 . - . KQ414772.1 exonerate:protein2genome:local exon 17183 17316 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 17181 17182 . - . intron_id 4 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 16781 17182 . - . intron_id 4 KQ414772.1 exonerate:protein2genome:local splice3 16781 16782 . - . intron_id 3 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 16648 16780 . - . KQ414772.1 exonerate:protein2genome:local exon 16648 16780 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 16646 16647 . - . intron_id 5 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 16565 16647 . - . intron_id 5 KQ414772.1 exonerate:protein2genome:local splice3 16565 16566 . - . intron_id 4 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 16520 16564 . - . KQ414772.1 exonerate:protein2genome:local exon 16520 16564 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 16520 17847 485 - . alignment_id 1 ; Query gi|815925234|ref|XP_012247254.1| ; Align 17848 1 42 ; Align 17724 16 21 ; Align 17700 23 96 ; Align 17488 56 90 ; Align 17317 86 132 ; Align 16780 131 132 ; Align 16565 175 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 285 Query range: 86 -> 175 Target range: 37308 -> 36908 87 : AlaThrMetGluIleCysValAspPheTyrLysPheIleSerPheLeuValIleGlnPhe : 106 :!!! !|||!!: !|||:!!!!:|||||||||!:! !:!!|||||||||:!:|||.!. SerMetMetAspProCysMetGluPheTyrLysTyrCysAlaPheLeuValValGlnLeu 37308 : TCCATGATGGACCCTTGCATGGAGTTCTACAAGTATTGCGCTTTCTTGGTGGTGCAACTG : 37251 107 : LeuHisLeuPheCysLeuThrMetGlnGlyGlnPheIleIleAsnSerSerAspGluIle : 126 :!!||||||.!!! !|||:!!!!:||||||!!.|||:!!||| !||| !||| !! ! ValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleLeuSerHisAspMetThr 37250 : GTTCATTTGCTTTTCCTTTCTATCCAGGGACACTTTGTTATACTCTCGCATGACATGACT : 37191 127 : TyrAspAla{Il} >>>> Target Intron 1 >>>> {e}TyrGluAlaSerTrp : 135 |||||| !{||} 133 bp {|}|||...|||!.!||| TyrAspAsn{Il}++ ++{e}TyrSerAlaLysTrp 37190 : TACGACAAC{AT}gt.........................ag{A}TATAGCGCAAAATGG : 37031 136 : TyrAsnThrAsnProLysThrGlnAlaLeuTyrLeuLeuAlaLeuArgArgSerLeuThr : 155 ||||||!:!:::|||!:!||||||.!!||||||:!!|||||||||||||||||||||||| TyrAsnSerSerProArgThrGlnThrLeuTyrValLeuAlaLeuArgArgSerLeuThr 37030 : TACAACAGTTCGCCGAGAACGCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACT : 36971 156 : ProCysTyrLeuThrAlaGlyGlyLeuIleArgLeuAsnMetGluSerPheSerGluVal : 175 ||| ! ||||||||||||||||||||| !||||||:!!|||!!!|||:!!|||||| ProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGluVal 36970 : CCGCCATTGCTCACTGCGGGAGGACTGATTTCCTTGAATTTGGAGACTTTTGCCGaggta : 36911 vulgar: gi|815925234|ref|XP_012247254.1| 86 175 . KQ414772.1 37308 36908 - 285 M 43 129 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 36909 37308 285 - . gene_id 2 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 37178 37308 . - . KQ414772.1 exonerate:protein2genome:local exon 37178 37308 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 37176 37177 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 37045 37177 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 37045 37046 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 36909 37044 . - . KQ414772.1 exonerate:protein2genome:local exon 36909 37044 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 36909 37308 285 - . alignment_id 2 ; Query gi|815925234|ref|XP_012247254.1| ; Align 37309 87 129 ; Align 37044 131 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 285 Query range: 86 -> 175 Target range: 35874 -> 35474 87 : AlaThrMetGluIleCysValAspPheTyrLysPheIleSerPheLeuValIleGlnPhe : 106 :!!! !|||!!: !|||:!!!!:|||||||||!:! !:!!|||||||||:!:|||.!. SerMetMetAspProCysMetGluPheTyrLysTyrCysAlaPheLeuValValGlnLeu 35874 : TCCATGATGGACCCTTGCATGGAGTTCTACAAGTATTGCGCTTTCTTGGTGGTGCAACTG : 35817 107 : LeuHisLeuPheCysLeuThrMetGlnGlyGlnPheIleIleAsnSerSerAspGluIle : 126 :!!||||||.!!! !|||:!!!!:||||||!!.|||:!!||| !||| !||| !! ! ValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleLeuSerHisAspMetThr 35816 : GTTCATTTGCTTTTCCTTTCTATCCAGGGACACTTTGTTATACTCTCGCATGACATGACT : 35757 127 : TyrAspAla{Il} >>>> Target Intron 1 >>>> {e}TyrGluAlaSerTrp : 135 |||||| !{||} 133 bp {|}|||...|||!.!||| TyrAspAsn{Il}++ ++{e}TyrSerAlaLysTrp 35756 : TACGACAAC{AT}gt.........................ag{A}TATAGCGCAAAATGG : 35597 136 : TyrAsnThrAsnProLysThrGlnAlaLeuTyrLeuLeuAlaLeuArgArgSerLeuThr : 155 ||||||!:!:::|||!:!||||||.!!||||||:!!|||||||||||||||||||||||| TyrAsnSerSerProArgThrGlnThrLeuTyrValLeuAlaLeuArgArgSerLeuThr 35596 : TACAACAGTTCGCCGAGAACGCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACT : 35537 156 : ProCysTyrLeuThrAlaGlyGlyLeuIleArgLeuAsnMetGluSerPheSerGluVal : 175 ||| ! ||||||||||||||||||||| !||||||:!!|||!!!|||:!!|||||| ProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGluVal 35536 : CCGCCATTGCTCACTGCGGGAGGACTGATTTCCTTGAATTTGGAGACTTTTGCCGAGGTA : 35477 vulgar: gi|815925234|ref|XP_012247254.1| 86 175 . KQ414772.1 35874 35474 - 285 M 43 129 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 35475 35874 285 - . gene_id 3 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 35744 35874 . - . KQ414772.1 exonerate:protein2genome:local exon 35744 35874 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 35742 35743 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 35611 35743 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 35611 35612 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 35475 35610 . - . KQ414772.1 exonerate:protein2genome:local exon 35475 35610 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 35475 35874 285 - . alignment_id 3 ; Query gi|815925234|ref|XP_012247254.1| ; Align 35875 87 129 ; Align 35610 131 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 279 Query range: 84 -> 175 Target range: 32137 -> 31763 85 : GlnIleAlaThrMetGluIleCysValAspPheTyrLysPheIleSerPheLeuValIle : 104 ::! :!!! !|||!!: !||||||!!:||||||||| ! !||||||||||||:!: LysAlaSerMetMetAspProCysValGluPheTyrLysAspCysSerPheLeuValVal 32137 : aaGGCGTCTATGATGGATCCTTGCGTCGAGTTCTACAAGGATTGCAGTTTCCTTGTGGTG : 32080 105 : GlnPheLeuHisLeuPheCysLeuThrMetGlnGlyGlnPheIleIleAsnSerSerAsp : 124 |||.!.:!!||||||.!!! !|||:!!!!:||||||!!.|||:!!||| !||| !||| GlnLeuValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleValSerHisAsp 32079 : CAGCTGGTTCATTTGCTTTTCCTTTCCATCCAGGGACACTTCGTTATAGTCTCGCATGAT : 32020 125 : GluIleTyrAspAla{Il} >>>> Target Intron 1 >>>> {e}TyrGluAla : 133 :!!:!!||||||::!{||} 101 bp {|}|||...||| GlnValTyrAspSer{Il}++ ++{e}TyrSerAla 32019 : CAGGTTTACGATAGT{AT}gt.........................ag{A}TACAGTGCA : 31892 134 : SerTrpTyrAsnThrAsnProLysThrGlnAlaLeuTyrLeuLeuAlaLeuArgArgSer : 153 !!!||||||!!.!:!!..|||!:!||||||.!!|||||| !|||||||||||||||.!! ThrTrpTyrLysSerThrProArgThrGlnThrLeuTyrGlyLeuAlaLeuArgArgGly 31891 : ACGTGGTACAAGAGTACGCCGAGAACGCAAACTTTGTACGGGCTAGCTTTGAGAAGAGGC : 31832 154 : LeuThrProCysTyrLeuThrAlaGlyGlyLeuIleArgLeuAsnMetGluSerPheSer : 173 ||||||||| ||||||||||||||||||||| !||||||:!!|||!!!|||:!! LeuThrProProValLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAla 31831 : TTGACTCCACCGGTGCTCACAGCTGGAGGATTGATTTCGTTGAATCTGGAGACTTTTGCT : 31772 174 : GluVal : 175 |||||| GluVal 31771 : GAGGTG : 31764 vulgar: gi|815925234|ref|XP_012247254.1| 84 175 . KQ414772.1 32137 31763 - 279 M 45 135 S 0 2 5 0 2 I 0 97 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 31764 32137 279 - . gene_id 4 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 32001 32137 . - . KQ414772.1 exonerate:protein2genome:local exon 32001 32137 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 31999 32000 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 31900 32000 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 31900 31901 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 31764 31899 . - . KQ414772.1 exonerate:protein2genome:local exon 31764 31899 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 31764 32137 279 - . alignment_id 4 ; Query gi|815925234|ref|XP_012247254.1| ; Align 32138 85 135 ; Align 31899 131 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 278 Query range: 84 -> 183 Target range: 41635 -> 40392 85 : GlnIleAlaThrMetGluIleCysValAspPheTyrLysPheIleSerPheLeuValIle : 104 :!! :!!! !|||!!: !||||||!!:||||||||| ! ! !|||||||||:!: LysAlaSerMetMetAspProCysValGluPheTyrLysAspCysValPheLeuValVal 41635 : AAGGCGTCCATGATGGACCCTTGCGTGGAGTTCTACAAAGATTGCGTATTCTTGGTGGTG : 41578 105 : GlnPheLeuHisLeuPheCysLeuThrMetGlnGlyGlnPheIleIleAsnSerSerAsp : 124 |||.!!:!!||||||.!!! !|||.!!!!:||||||!!.|||:!!! ! !||| ||| GlnLeuValHisLeuLeuPheLeuAlaIleGlnGlyHisPheValThrValSerHisAsp 41577 : CAGCTCGTTCATTTGCTTTTCCTTGCCATACAGGGACACTTCGTTACAGTCTCGCatgac : 41518 125 : GluIleTyrAspAla{Il} >>>> Target Intron 1 >>>> {e}TyrGluAla : 133 ::::::||||||:::{!!} 117 bp {:}|||!!:||| GlnValTyrAspSer{Me}++ ++{t}TyrAspAla 41517 : caggtttacgatagt{AT}gt.........................ag{G}TACGATGCA : 41374 134 : SerTrpTyrAsnThrAsnProLysThrGlnAlaLeuTyrLeuLeuAlaLeuArgArgSer : 153 !|||||||||!:!!..|||!:!||||||.!!||||||:!!|||||||||||||||!!! ValTrpTyrAsnSerThrProArgThrGlnThrLeuTyrMetLeuAlaLeuArgArgThr 41373 : GTATGGTACAACAGTACGCCAAGAACGCAAACTTTGTACATGCTAGCTTTGAGGAGGACT : 41314 154 : LeuThrProCysTyrLeuThrAlaGlyGlyLeuIleArgLeuAsnMetGluSerPheSer : 173 ||||||||| ||||||||||||||||||||| ||||||:::|||:::|||||| LeuThrProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheSer 41313 : TTAACTCCACCACTGCTCACTGCAGGAGGACtgatttcgttgaatttggaaactttttcG : 41254 174 : Glu >>>> Target Intron 2 >>>> <->ValIleLysLeuCysValSerTyrT : 183 :!! 826 bp :!!:!!|||||||||:!!..! ! | Lys++ ++SerIleLeuLysLeuCysIleGlnGlnT 41253 : AAGgt.........................agAGTATTCTCAAATTGTGTATCCAGCAGT : 40395 184 : yr : 183 || yr 40394 : AT : 40393 vulgar: gi|815925234|ref|XP_012247254.1| 84 183 . KQ414772.1 41635 40392 - 278 M 45 135 S 0 2 5 0 2 I 0 113 3 0 2 S 1 1 M 44 132 5 0 2 I 0 822 3 0 2 G 0 3 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 40393 41635 278 - . gene_id 5 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 41499 41635 . - . KQ414772.1 exonerate:protein2genome:local exon 41499 41635 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 41497 41498 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 41382 41498 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 41382 41383 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 41249 41381 . - . KQ414772.1 exonerate:protein2genome:local exon 41249 41381 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 41247 41248 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 40423 41248 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 40423 40424 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 40393 40419 . - . KQ414772.1 exonerate:protein2genome:local exon 40393 40419 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 40393 41635 278 - . alignment_id 5 ; Query gi|815925234|ref|XP_012247254.1| ; Align 41636 85 135 ; Align 41381 131 132 ; Align 40420 175 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 241 Query range: 85 -> 187 Target range: 45167 -> 44733 86 : IleAlaThrMetGluIleCysValAspPheTyrLysPheIleSerPheLeuValIleGln : 105 ||||||..!! |||||| !! !!|||.!.! !!:!!!. !!!!||||||:!! !||| IleAlaValThrGluIleSerPheAspIleCysArgLeuCysThrPheLeuIleAlaGln 45167 : ATAGCCGTGACAGAAATTAGCTTCGATATATGCAGATTGTGCACGTTCCTGATCGCACAA : 45110 106 : PheLeuHisLeuPheCysLeuThrMetGlnGlyGlnPheIleIleAsnSerSerAspGlu : 125 !:!!|||:!!.!.! !||||||!!:||||||||||||:!:|||:!!||| !||| ! ThrValHisMetLeuPheLeuThrIleGlnGlyGlnPheValIleAspSerHisAspThr 45109 : ACTGTACACATGCTGTTTTTGACGATTCAGGGACAGTTCGTGATCGATTCGCATGATACA : 45050 126 : IleTyrAspAlaIleTyr >>>> Target Intron 1 >>>> GluAlaSerTrpT : 136 :!:|||:!!!.! ! 30 bp ||||||! !|||| ValTyrAsnValCysMet++ +-GluAlaIleTrpT 45049 : GTGTACAATGTGTGTATGgt.........................acGAGGCAATTTGGT : 44987 137 : yrAsnThrAsnProLysThrGlnAlaLeuTyrLeuLeuAlaLeuArgArgSerLeuThrP : 156 ||!!.! ! |||||| !||| !||| !!:!!:!!|||||||||!:!|||||||||| yrLysMetProProLysLeuGlnLeuLeuAspValValAlaLeuArgLysSerLeuThrP 44986 : ATAAGATGCCACCTAAACTTCAGTTGCTAGACGTTGTAGCGCTTAGAAAAAGCCTAACTC : 44927 157 : roCysTyrLeuThrAlaGlyGlyLeuIleArgLeuAsnMetGluSerPheSerGlu >> : 175 || ! ||||||||||||||||||!!:||||||:!!:!!.!.||||||:!!:!! roProIleLeuThrAlaGlyGlyLeuMetArgLeuAspLeuAsnSerPheAlaGln++ 44926 : CTCCTATACTGACGGCGGGAGGGTTGATGCGGTTAGATTTGAATTCTTTCGCACAGgt.. : 44868 176 : >> Target Intron 2 >>>> ValIleLysLeuCysValSerTyrTyrThrValLe : 186 98 bp ::::!:||| !||||||||||||||||||!.!|| ++LeuLeuLysAlaCysValSerTyrTyrThrAlaLe 44867 : .......................agctgCTGAAAGCTTGCGTCTCGTATTATACGGCACT : 44739 187 : uArg : 187 |||| uArg 44738 : GCGA : 44734 vulgar: gi|815925234|ref|XP_012247254.1| 85 187 . KQ414772.1 45167 44733 - 241 M 46 138 5 0 2 I 0 26 3 0 2 M 43 129 5 0 2 I 0 94 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 44734 45167 241 - . gene_id 6 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 45030 45167 . - . KQ414772.1 exonerate:protein2genome:local exon 45030 45167 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 45028 45029 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 45000 45029 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 45000 45001 . - . intron_id 0 ; splice_site "AC" KQ414772.1 exonerate:protein2genome:local cds 44871 44999 . - . KQ414772.1 exonerate:protein2genome:local exon 44871 44999 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 44869 44870 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 44773 44870 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 44773 44774 . - . intron_id 1 ; splice_site "ag" KQ414772.1 exonerate:protein2genome:local cds 44734 44772 . - . KQ414772.1 exonerate:protein2genome:local exon 44734 44772 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 44734 45167 241 - . alignment_id 6 ; Query gi|815925234|ref|XP_012247254.1| ; Align 45168 86 138 ; Align 45000 132 129 ; Align 44773 175 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 230 Query range: 85 -> 175 Target range: 28321 -> 27981 86 : IleAlaThrMetGluIleCysValAspPheTyrLysPheIleSerPheLeuValIleGln : 105 :!::!!! !|||.!. !||||||!!:|||||||||!:! !.!!|||||||||:!:||| ValSerMetMetAsnProCysValGluPheTyrLysTyrCysGlyPheLeuValValGln 28321 : GTGTCCATGATGAACCCTTGCGTGGAGTTCTACAAGTATTGCGGTTTCTTGGTGGTGCAA : 28264 106 : PheLeuHisLeuPheCysLeuThrMetGlnGlyGlnPheIleIleAsnSerSerAsp > : 125 .!.:!!||||||.!!! !|||:!!!!:||||||!!.|||:!!||| !||| !||| LeuValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleValSerHisAsp-+ 28263 : CTGGTTCATTTGCTTTTCCTTTCTATCCAGGGACACTTCGTTATAGTCTCGCATGACat. : 28202 126 : >>> Target Intron 1 >>>> GluIleTyrAspAlaIleTyrGluAlaSerTrpT : 136 70 bp :!!:!:!:!! ! !! !! !! |||!!!|||| ++LysLeuPheValArgArgCysAlaAlaThrTrpT 28201 : ........................agAAGTTGTTCGTTCGCAGATGCGCTGCAACATGGT : 28101 137 : yrAsnThrAsnProLysThrGlnAlaLeuTyrLeuLeuAlaLeuArgArgSerLeuThrP : 156 |||||!:!!.. !!!:!|||||||||||||||:!!|||||||||||||||!:!||||||| yrAsnSerThrSerArgThrGlnAlaLeuTyrMetLeuAlaLeuArgArgAsnLeuThrP 28100 : ACAACAGTACATCTAGAACGCAAGCTTTGTACATGCTAGCTTTGAGAAGGAACTTGACAC : 28041 157 : roCysTyrLeuThrAlaGlyGlyLeuIleArgLeuAsnMetGluSerPheSerGluVal : 175 || :!!|||||||||||||||||| !||||||:!!|||!!!|||:!!|||||| roProLeuIleThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGluVal 28040 : CACCACTGATCACCGCCGGAGGACTGATTTCCTTGAATTTGGAGACCTTCGCGGAGGTA : 27982 vulgar: gi|815925234|ref|XP_012247254.1| 85 175 . KQ414772.1 28321 27981 - 230 M 39 117 5 0 2 I 0 66 3 0 2 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 27982 28321 230 - . gene_id 7 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 28205 28321 . - . KQ414772.1 exonerate:protein2genome:local exon 28205 28321 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 28203 28204 . - . intron_id 1 ; splice_site "AT" KQ414772.1 exonerate:protein2genome:local intron 28135 28204 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 28135 28136 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 27982 28134 . - . KQ414772.1 exonerate:protein2genome:local exon 27982 28134 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 27982 28321 230 - . alignment_id 7 ; Query gi|815925234|ref|XP_012247254.1| ; Align 28322 86 117 ; Align 28135 125 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 222 Query range: 85 -> 162 Target range: 23441 -> 23140 86 : IleAlaThrMetGluIleCysValAspPheTyrLysPheIleSerPheLeuValIleGln : 105 :!!:!!||||||.!. !||||||!!:|||||||||!:! !.!!|||||||||:!:||| ValSerThrMetAsnProCysValGluPheTyrLysTyrGlyGlyPheLeuValValGln 23441 : GTATCCACGATGAACCCTTGCGTGGAGTTCTACAAGTATGGTGGTTTCTTGGTGGTGCAA : 23384 106 : PheLeuHisLeuPheCysLeuThrMetGlnGlyGlnPheIleIleAsnSerSerAspGlu : 125 .!.:!!||||||.!!! !|||:!!!!:||||||!!.|||:!!||| !||| !||| ! LeuValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleValSerHisAspThr 23383 : CTGGTTCATTTGCTTTTCCTTTCTATCCAGGGACACTTCGTTATAGTCTCGCATGACACG : 23324 126 : IleTyrAspAla{Il} >>>> Target Intron 1 >>>> {e}TyrGluAlaSer : 134 ! !! !||| !{||} 70 bp {|}|||...|||!!! ThrSerAspAsn{Il}++ ++{e}TyrSerAlaThr 23323 : ACTTCCGATAAT{AT}gt.........................ag{A}TACAGCGCTACA : 23227 135 : TrpTyrAsnThrAsnProLysThrGlnAlaLeuTyrLeuLeuAlaLeuArgArgSerLeu : 154 ||||||||| !!..||||||..!||||||||||||:!!|||||||||||||||!:!||| TrpTyrAsnGlyThrProLysValGlnAlaLeuTyrValLeuAlaLeuArgArgAsnLeu 23226 : TGGTACAACGGTACACCGAAAGTGCAAGCTTTGTACGTGCTAGCTTTGAGAAGGAACTTG : 23167 155 : ThrProCysTyrLeuThrAlaGly : 162 |||||| :!!||||||||| ThrProProLeuIleThrAlaGly 23166 : ACTCCACCGCTGATCACTGCCGGA : 23141 vulgar: gi|815925234|ref|XP_012247254.1| 85 162 . KQ414772.1 23441 23140 - 222 M 44 132 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 23141 23441 222 - . gene_id 8 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 23308 23441 . - . KQ414772.1 exonerate:protein2genome:local exon 23308 23441 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 23306 23307 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 23238 23307 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 23238 23239 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 23141 23237 . - . KQ414772.1 exonerate:protein2genome:local exon 23141 23237 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 23141 23441 222 - . alignment_id 8 ; Query gi|815925234|ref|XP_012247254.1| ; Align 23442 86 132 ; Align 23237 131 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 217 Query range: 99 -> 188 Target range: 19834 -> 19369 100 : SerPheLeuValIleGlnPheLeuHisLeuPheCysLeuThrMetGlnGlyGlnPheIle : 119 !!!|||!!!||| !||| !!!|||:!!|||! !|||!.!:!:||||||||||||:!: ThrPhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGlnGlyGlnPheVal 19834 : ACGTTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGGACAATTTGTG : 19777 120 : IleAsnSerSerAspGlu{Il} >>>> Target Intron 1 >>>> {e}TyrAsp : 128 ||||||:!!! !||||||{:!} 113 bp {:} ! ! IleAsnAlaPheAspGlu{Le}++ --{u}ValLeu 19776 : ATAAACGCATTCGACGAA{CT}gt.........................ct{G}GTCCTT : 19637 129 : AlaIleTyrGluAlaSerTrpTyrAsnThrAsnProLysThrGlnAlaLeuTyrLeuLeu : 148 ..!! !||||||:!!..!||||||||| !!.!|||!:!|||||||||||||||:!!||| CysArgTyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeu 19636 : TGCAGATACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTG : 19577 149 : AlaLeuArgArgSerLeuThrProCysTyrLeuThrAlaGlyGlyLeuIleArgLeuAsn : 168 |||||||||!!!!!!|||!.!||| ! |||||||||||||||:!!! ! !|||||| AlaLeuArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsn 19576 : GCATTGAGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAAT : 19517 169 : MetGluSerPheSerGlu >>>> Target Intron 2 >>>> ValIleLysLeuC : 179 :!:..!||||||:!!||| 85 bp :!!|||||| !! LeuArgSerPheAlaGlu++ ++IleIleLysAlaS 19516 : CTACGATCGTTCGCAGAGgt.........................agATCATCAAAGCAT : 19399 180 : ysValSerTyrTyrThrValLeuArgSer : 188 !||||||||||||||||||:!!!:!!!! erValSerTyrTyrThrValMetGlnThr 19398 : CTGTTTCCTACTACACGGTGATGCAGACC : 19370 vulgar: gi|815925234|ref|XP_012247254.1| 99 188 . KQ414772.1 19834 19369 - 217 M 26 78 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 48 144 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 19370 19834 217 - . gene_id 9 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 19755 19834 . - . KQ414772.1 exonerate:protein2genome:local exon 19755 19834 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 19753 19754 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 19642 19754 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 19642 19643 . - . intron_id 0 ; splice_site "CT" KQ414772.1 exonerate:protein2genome:local cds 19497 19641 . - . KQ414772.1 exonerate:protein2genome:local exon 19497 19641 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 19495 19496 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 19412 19496 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 19412 19413 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 19370 19411 . - . KQ414772.1 exonerate:protein2genome:local exon 19370 19411 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 19370 19834 217 - . alignment_id 9 ; Query gi|815925234|ref|XP_012247254.1| ; Align 19835 100 78 ; Align 19641 127 144 ; Align 19412 175 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 136 Query range: 125 -> 175 Target range: 12658 -> 12508 126 : IleTyrAspAlaIleTyrGluAlaSerTrpTyrAsnThrAsnProLysThrGlnAlaLeu : 145 :!!:!! !:!!! !|||...|||! !|||||||||!:!:!! !!:!||||||:!!||| ValHisPheSerArgTyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeu 12658 : GTCCATTTTTCTAGATACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTG : 12601 146 : TyrLeuLeuAlaLeuArgArgSerLeuThrProCysTyrLeuThrAlaGlyGlyLeuIle : 165 !:!:!!||||||||||||!.!!!!|||:!! !! ! ! :!!|||||||||||||||||| PheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIle 12600 : TTTGTATTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATT : 12541 166 : ArgLeuAsnMetGluSerPheSerGluVal : 175 ! !:!!|||:!!:!!||||||||||||||| ThrMetAsnLeuGlnSerPheSerGluVal 12540 : ACAATGAACTTGCAAAGTTTCTCAGAGGTA : 12509 vulgar: gi|815925234|ref|XP_012247254.1| 125 175 . KQ414772.1 12658 12508 - 136 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 12509 12658 136 - . gene_id 10 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 12509 12658 . - . KQ414772.1 exonerate:protein2genome:local exon 12509 12658 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 12509 12658 136 - . alignment_id 10 ; Query gi|815925234|ref|XP_012247254.1| ; Align 12659 126 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 61 -> 134 Target range: 12912 -> 12693 62 : SerThrHisValThrTyrLeuPheMetCysMetGlyIleValValLeuCysValSerIle : 81 |||:!! ||| ! ! |||!:! ! ! ! :!!:!!:!! ! !!!!||| SerSerSerValArgGlnLeuTyrArgValAlaIleProLeuIleIleLeuArgThrIle 12912 : AGCTCTTCAGTGCGGCAATTATATCGCGTTGCGATACCGCTGATCATCCTCAGAACAATT : 12855 82 : ThrMetAlaGlnIleAlaThrMetGluIleCysValAspPheTyrLysPheIleSerPhe : 101 :!! ! !|||:!::!!!.! !|||||| !!.!!!:||| !||| ! !!!!||| SerTrpLysGlnValSerAsnSerGluIleAsnAlaGluPheAlaLysAspCysThrPhe 12854 : TCTTGGAAACAGGTGTCGAACTCGGAGATTAATGCGGAGTTTGCCAAGGATTGCACATTT : 12795 102 : LeuValIleGlnPheLeuHisLeuPheCysLeuThrMetGlnGlyGlnPheIleIleAsn : 121 :!!|||||||||!!.:!!|||:!!.!!! !||||||:!:||||||||||||:!:|||:!! IleValIleGlnLeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAsp 12794 : ATCGTGATTCAATTGGTACACATACTTTACCTAACTCTTCAAGGACAATTCGTGATCGAC : 12735 122 : SerSerAspGluIleTyrAspAlaIleTyrGluAlaSer : 134 :!!!:!!!:||||||!:!!!::!!!!:!! |||...::: AlaAsnGluGluIlePheGluSerMet***GluValAsn 12734 : GCGAACGAGGAAATCTTCGAATCGATGTAagaagtaaat : 12694 vulgar: gi|815925234|ref|XP_012247254.1| 61 134 . KQ414772.1 12912 12693 - 124 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 12694 12912 124 - . gene_id 11 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 12694 12912 . - . KQ414772.1 exonerate:protein2genome:local exon 12694 12912 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 12694 12912 124 - . alignment_id 11 ; Query gi|815925234|ref|XP_012247254.1| ; Align 12913 62 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920796|ref|XP_012245315.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 323 -> 380 Target range: 1345564 -> 1345732 324 : SerThrGluIleAlaAsnThrAlaTyrTyrAlaGluTrpTyrAsnLeuProProLy : 342 |||:!!|||!!: !.!..!!..!|||!:!::!.!.||||||:!!|||||| !|| SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 343 : sSerAlaArgTrpLeuValIleIleMetCysArgAlaArgSerSerProLeuGlnI : 361 |! !.!!|||! !|||:!!.!! !!!:..!|||:!!!:! !.!|||! ! ! : sTyrThrArgSerLeuIlePheCysIleAlaArgSerGln---LysProSerTyrL 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAA---AAGCCGTCGTACC : 1345673 362 : leThrAlaGlyArgPheTyrTrpPheThrLeuAlaLeuTyrThrGlnValSerVal : 379 !!|||||||||!:!|||||| !|||:!!|||! ! !!:! ! ||||||:!! euThrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIleValSerLeu 1345674 : TAACAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCGTGAGTTTA : 1345727 380 : Asn : 380 ::! Ser 1345728 : TCT : 1345732 vulgar: gi|815920796|ref|XP_012245315.1| 323 380 . KQ414782.1 1345564 1345732 + 101 M 32 96 G 1 0 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345732 101 + . gene_id 1 ; sequence gi|815920796|ref|XP_012245315.1| ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345732 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345732 . + . insertions 0 ; deletions 1 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345732 101 + . alignment_id 1 ; Query gi|815920796|ref|XP_012245315.1| ; Align 1345565 324 96 ; Align 1345661 357 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 340 -> 393 Target range: 1345567 -> 1345726 341 : SerGluIleGlyThrValSerTyrGluIleAspTrpTyrAsnLeuProAlaLysGl : 359 ||||||!!: ! !!.!!!!||| ! !:!!||||||:!!||||||! !||| ! SerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLysTy 1345568 : TCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAAATA : 1345622 360 : uAlaTyrAspLeuIleLeuLeuIleSerIleSerGlnTyrProProLysLeuThrA : 378 .!! ...||||||!!!! !|||:!! !|||||| ! ||| !! ! ||||||| rThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuThrA 1345623 : CACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAG : 1345679 379 : laGlyLysIleIleGluLeuSerLeuAsnThrPheSerSerValAla : 393 ||||||||.!! !! !!!!||||||.!.||||||.!!! !|||::! laGlyLysPheTyrValPheSerLeuGluThrPheGlyIleValSer 1345680 : CTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCGTGAGT : 1345726 vulgar: gi|815911906|ref|XP_012241394.1| 340 393 . KQ414782.1 1345567 1345726 + 101 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345568 1345726 101 + . gene_id 1 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345568 1345726 . + . KQ414782.1 exonerate:protein2genome:local exon 1345568 1345726 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345568 1345726 101 + . alignment_id 1 ; Query gi|815911906|ref|XP_012241394.1| ; Align 1345568 341 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 341 -> 409 Target range: 1345564 -> 1345846 342 : SerSerAsnValGlyLeuSerCysPheMetIleAspTrpPheHisLeuProThrLy : 360 ||||||.!.:!! !! !:!!|||!:!.!.! !:!!|||!:! !!|||||| !|| SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 361 : sThrIleHisGlyLeuIleLeuIleIleAlaMetSerAsnAsnProValLysIleT : 379 | !! !....!||||||!!! !|||||| |||.!.!!.||| ! ! :!!| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 380 : hrAlaGlyArgIleAlaAspLeuSerLeuSerThrPheGlySer >>>> Targe : 394 ||||||||!:!.!! !! !!!||||||..!|||||||||! ! hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIle++ 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCgt.......... : 1345723 395 : t Intron 1 >>>> ValLeuLysSerSerLeuAlaTyrLeuSerPheLeuArg : 406 78 bp :!!:!!|||:!!|||:!!|||||||||||| !!|||!:! ++IleValLysAlaSerMetAlaTyrLeuSerValLeuLys 1345724 : ...............agATAGTAAAAGCGTCGATGGCCTATCTTTCCGTTCTGAAA : 1345835 407 : ThrIleVal : 409 !:!|||:!! SerIleIle 1345836 : AGCATTATC : 1345846 vulgar: gi|815911908|ref|XP_012241395.1| 341 409 . KQ414782.1 1345564 1345846 + 138 M 52 156 5 0 2 I 0 74 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345846 138 + . gene_id 1 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345565 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345846 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345846 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345846 138 + . alignment_id 1 ; Query gi|815911908|ref|XP_012241395.1| ; Align 1345565 342 156 ; Align 1345799 394 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920800|ref|XP_003492337.2| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 232 -> 285 Target range: 1345564 -> 1345723 233 : SerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProSe : 251 ||| !||||||..!.!.:!!..!||| ||||||||||||:!!:!! !! !!. SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 252 : rGlnThrLysCysLeuLeuPheIleMetAsnArgSerThrArgProLeuCysLeuT : 270 ! ! |||::!! |||:!!||| !!!: !|||||| !!:!|||! !! !|||| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 271 : hrAlaGlyLysPheGlyIlePheSerMetGluLeuPheSerThrIle : 285 |||||||||||||| !:!:||||||:!:||| !|||.!!! !:!: hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIleVal 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCGTG : 1345723 vulgar: gi|815920800|ref|XP_003492337.2| 232 285 . KQ414782.1 1345564 1345723 + 128 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345723 128 + . gene_id 1 ; sequence gi|815920800|ref|XP_003492337.2| ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345723 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345723 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345723 128 + . alignment_id 1 ; Query gi|815920800|ref|XP_003492337.2| ; Align 1345565 233 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927462|ref|XP_012248265.1| PREDICTED: odorant receptor 49a-like, partial [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 77 -> 196 Target range: 14242 -> 13888 78 : LeuGluGluValThrIleArgGlySerLysMetAlaLysLeuTyrArgAsnThrLeuMet : 97 |||.!.!!: !|||:!! ! !!!! ! !!:!.!|||! !! ! ! !.! !!!: LeuAsnAspGlnThrValTyrPheThrTyrIleValLysTyrSerIleAlaAsnAlaIle 14242 : TTAAACGACCAAACTGTTTATTTTACGTACATTGTCAAATATTCGATAGCGAACGCGATC : 14185 98 : ValPheMetValLeuPheLeuLeuValProLeuIleSerProMetMetAspIleLeuLeu : 117 |||! !:!::!!||||||:!!! !..!|||:!!! ! !!! !!!::!!|||||||||||| ValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeu 14184 : GTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTA : 14125 118 : ProLeuAsnGluThrArgProArgGlnGlnLeuLeuAsnValAsnTyrValLeuPheAsp : 137 ||| !||||||:!!||| ! ! ! ! :!!! ! !.! ||| !!!! !||| ProLysAsnGluSerArgAspValAlaTyrIleTyrProAla---TyrTyrPheThrAsp 14124 : CCGAAGAACGAGTCACGAGACGTAGCGTACATTTATCCGGCC---TATTATTTCACCGAC : 14068 138 : SerHisAsnTyrPhePheCysValTyrLeuGlnLeuSerTrpAlaAlaIleValValSer : 157 ..!|||!!.||| ! ! ! !:!! ! !!!.:!!:!!! !.! !:!!||||||! ! GluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPhe 14067 : GAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTT : 14008 158 : IleSerIleValThrValAspSerLeuLeuMetLeuIleValHisHisAsnSerGlyLeu : 177 ! ! !|||.!! !|||!!! !! !!!:! !:!!|||!!.|||..!!!!|||||| TyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeu 14007 : TACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTG : 13948 178 : PheIleValCysGlyHisGlnIleGlnLysLysThrArgHisLeuAsnSerPheThr : 196 !!. !|||! !||| :::|||:::...... ! ! |||||| !!|||!:! LeuAlaValSerGly***LysIleArgSerAsnAspSer***LeuAsnProPheSer 13947 : TTGGCCGTGTCCGGgtaaaaaattcgatcgaacgattCGTAGCTCAACCCTTTCAGT : 13889 vulgar: gi|815927462|ref|XP_012248265.1| 77 196 . LHQN01017803.1 14242 13888 - 115 M 54 162 G 1 0 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13889 14242 115 - . gene_id 1 ; sequence gi|815927462|ref|XP_012248265.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13889 14242 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13889 14242 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 13889 14242 115 - . alignment_id 1 ; Query gi|815927462|ref|XP_012248265.1| ; Align 14243 78 162 ; Align 14081 133 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927462|ref|XP_012248265.1| PREDICTED: odorant receptor 49a-like, partial [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 100 -> 186 Target range: 26231 -> 25976 101 : ValLeuPheLeuLeuValProLeuIleSerProMetMetAspIleLeuLeuProLeuAsn : 120 !.!||||||:!!! !:!!|||!!!:!:||||||!!::!!|||||||||:!!||||||||| AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsn 26231 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAAC : 26174 121 : GluThrArgProArgGlnGlnLeuLeuAsnValAsnTyrValLeuPheAspSerHisAsn : 140 ||||||||| !!||| !!!!:!! !! ! !||| !!!! !!|||..! !!!!. GluThrArgAlaArg---LeuPheValTyrProAlaTyrTyrPheValAspGluAspLys 26173 : GAGACGCGAGCACGG---TTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAA : 26117 141 : TyrPhePheCysValTyrLeuGlnLeuSerTrpAlaAlaIleValValSerIleSerIle : 160 ||| !!:!! :!! !!!.:!!! ! !.!!.!:!!:!!:!!! ! ! !.!! TyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPhe 26116 : TATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTC : 26057 161 : ValThrValAspSerLeuLeuMetLeuIleValHisHisAsnSerGlyLeuPheIleVal : 180 !.!! !|||:!! !! !:!!! ! !|||!!.||| !!!!||||||!!. !:!! CysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 26056 : TGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 25997 181 : CysGlyHisGlnIleGln : 186 ...||| ! !:!!||| AlaGly***LeuValGln 25996 : GCAGGGTAATTAGTTCAA : 25977 vulgar: gi|815927462|ref|XP_012248265.1| 100 186 . LHQN01017803.1 26231 25976 - 105 M 25 75 G 1 0 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25977 26231 105 - . gene_id 2 ; sequence gi|815927462|ref|XP_012248265.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25977 26231 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25977 26231 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25977 26231 105 - . alignment_id 2 ; Query gi|815927462|ref|XP_012248265.1| ; Align 26232 101 75 ; Align 26157 127 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 485 Query range: 0 -> 189 Target range: 18231 -> 16903 1 : MetValLeuValGlnHisAlaCysGlyLeuLeuIleValThr{Gl} >>>> Target : 15 ||||||||||||||||||.!!|||||||||!!! !|||.!!{||} 79 MetValLeuValGlnHisThrCysGlyLeuPheAlaValAla{Gl}++ 18231 : ATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCC{GG}gt............ : 18185 16 : Intron 1 >>>> {y}TyrArgTyrLysAsnAlaIle<->AsnAspLeuSerPheAsn : 28 bp {|}||||||!:!||||||:!!||| .!.||| !||| ! !!. ++{y}TyrArgPheLysAsnSerIleArgGluAspAsnSerValLys 18184 : .............ag{A}TACCGCTTCAAGAATTCAATTCGCGAGGACAATAGCGTGAAG : 18068 29 : ThrLysAspSerGluLysLysAlaLysGluThrTyrGluArgValArgPheSerIleGln : 48 !||| !!! !!!: ! !.!!||||||.!!|||:!!!.!!.! !!|||||||||||| GlyLysTyrPheAspHisTrpThrLysGluAlaTyrLysAsnAlaCysPheSerIleGln 18067 : GGGAAGTATTTCGACCACTGGACGAAAGAGGCGTACAAGAACGCGTGTTTCTCCATTCAG : 18008 49 : AlaHisGlnArgAlaIle{Me} >>>> Target Intron 2 >>>> {t}PheLeu : 57 !.!|||||||||||||||{! } 113 bp { }|||:!! GlyHisGlnArgAlaIle{As}++ ++{n}PheVal 18007 : GGACATCAACGTGCTATA{AA}gt.........................ag{C}TTTGTA : 17868 58 : GluLysIleGluSerThrHisValThrTyrLeuPheMetCysMetGlyIleValValLeu : 77 :!!:!!|||||| !! !|||! !||||||||||||! |||:!:|||:!:|||:!!||| LysGluIleGluArgGlyHisAspThrTyrLeuPheThrCysLeuGlyLeuValIleLeu 17867 : AAGGAAATTGAACGCGGCCATGACACGTACCTTTTCACCTGCTTAGGCTTGGTGATTCTA : 17808 78 : CysValSerIleThrMetAlaGln >>>> Target Intron 3 >>>> IleAlaT : 88 ||| !!|||||||||:!! !:!! 81 bp :!:::!| CysPheSerIleThrLeuIleLys++ ++LeuSerT 17807 : TGCTTCAGTATTACTCTGATCAAGgt.........................agCTGAGTA : 17694 89 : hrMetGluIleCysValAspPheTyrLysPheIleSerPheLeuValIleGlnPheLeuH : 108 || !!!:.!! !:!!|||||||||!:!!:! !|||||| !:!! !|||.!.:!!| hrSerAspPheAspIleAspPheTyrArgTyrCysSerPheThrLeuCysGlnLeuMetH 17693 : CGTCGGATTTCGACATAGACTTCTACAGATATTGCAGTTTTACGTTGTGTCAACTGATGC : 17634 109 : isLeuPheCysLeuThrMetGlnGlyGlnPheIleIleAsnSerSerAspGluIleTyrA : 128 |||||||| !:!!! !:!:||||||||||||:!::!::!!|||!!!!!:..!|||:!!! isLeuPheValIleMetLeuGlnGlyGlnPheValLeuAspSerCysGluArgIleHisG 17633 : ACCTGTTCGTTATCATGCTTCAGGGACAGTTCGTGCTGGATTCGTGCGAGAGAATTCACG : 17574 129 : spAla{Il} >>>> Target Intron 4 >>>> {e}TyrGluAlaSerTrpTyrA : 137 !:|||{||} 402 bp {|}||||||:!!! !||||||! luAla{Il}++ ++{e}TyrGluSerLeuTrpTyrT 17573 : AGGCG{AT}gt.........................ag{A}TACGAATCATTATGGTACA : 17145 138 : snThrAsnProLysThrGlnAlaLeuTyrLeuLeuAlaLeuArgArgSerLeuThrProC : 157 ..!:!::! !!||||||||||||||||||:!!:!!||||||||||||!:!||||||||| hrSerSerSerLysThrGlnAlaLeuTyrValValAlaLeuArgArgAsnLeuThrProT 17144 : CAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCGTTACGAAGAAACCTAACACCTA : 17085 158 : ysTyrLeuThrAlaGlyGlyLeuIleArgLeuAsnMetGluSerPheSerGlu >>>> : 175 !! !||||||||||||||||||:!:!:!|||||||||:!!||||||:!!||| hrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMetGlnSerPheAlaGlu++ 17084 : CCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATGCAAAGCTTCGCAGAGgt..... : 17029 176 : Target Intron 5 >>>> ValIleLysLeuCysValSerTyrTyrThrValLeuAr : 187 83 bp |||:!!|||:!!! !|||||||||||||||||||||!: ++ValValLysMetSerValSerTyrTyrThrValLeuLy 17028 : ....................agGTGGTAAAAATGTCCGTTTCCTATTATACGGTGTTGAA : 16912 188 : gSerThr : 189 !!!!||| sThrThr 16911 : GACAACG : 16904 vulgar: gi|815925234|ref|XP_012247254.1| 0 189 . LHQN01017803.1 18231 16903 - 485 M 14 42 S 0 2 5 0 2 I 0 75 3 0 2 S 1 1 M 7 21 G 0 3 M 32 96 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 30 90 5 0 2 I 0 77 3 0 2 M 44 132 S 0 2 5 0 2 I 0 398 3 0 2 S 1 1 M 44 132 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 16904 18231 485 - . gene_id 1 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 18188 18231 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18188 18231 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 18186 18187 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 18109 18187 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 18109 18110 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 17986 18108 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17986 18108 . - . insertions 3 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 17984 17985 . - . intron_id 2 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 17873 17985 . - . intron_id 2 LHQN01017803.1 exonerate:protein2genome:local splice3 17873 17874 . - . intron_id 1 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 17782 17872 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17782 17872 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 17780 17781 . - . intron_id 3 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 17701 17781 . - . intron_id 3 LHQN01017803.1 exonerate:protein2genome:local splice3 17701 17702 . - . intron_id 2 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 17567 17700 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17567 17700 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 17565 17566 . - . intron_id 4 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 17165 17566 . - . intron_id 4 LHQN01017803.1 exonerate:protein2genome:local splice3 17165 17166 . - . intron_id 3 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 17032 17164 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17032 17164 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 17030 17031 . - . intron_id 5 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 16949 17031 . - . intron_id 5 LHQN01017803.1 exonerate:protein2genome:local splice3 16949 16950 . - . intron_id 4 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 16904 16948 . - . LHQN01017803.1 exonerate:protein2genome:local exon 16904 16948 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 16904 18231 485 - . alignment_id 1 ; Query gi|815925234|ref|XP_012247254.1| ; Align 18232 1 42 ; Align 18108 16 21 ; Align 18084 23 96 ; Align 17872 56 90 ; Align 17701 86 132 ; Align 17164 131 132 ; Align 16949 175 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 285 Query range: 86 -> 175 Target range: 28921 -> 28521 87 : AlaThrMetGluIleCysValAspPheTyrLysPheIleSerPheLeuValIleGlnPhe : 106 :!!! !|||!!: !|||:!!!!:|||||||||!:! !:!!|||||||||:!:|||.!. SerMetMetAspProCysMetGluPheTyrLysTyrCysAlaPheLeuValValGlnLeu 28921 : TCCATGATGGACCCTTGCATGGAGTTCTACAAGTATTGCGCTTTCTTGGTGGTGCAACTG : 28864 107 : LeuHisLeuPheCysLeuThrMetGlnGlyGlnPheIleIleAsnSerSerAspGluIle : 126 :!!||||||.!!! !|||:!!!!:||||||!!.|||:!!||| !||| !||| !! ! ValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleLeuSerHisAspMetThr 28863 : GTTCATTTGCTTTTCCTTTCTATCCAGGGACACTTTGTTATACTCTCGCATGACATGACT : 28804 127 : TyrAspAla{Il} >>>> Target Intron 1 >>>> {e}TyrGluAlaSerTrp : 135 |||||| !{||} 133 bp {|}|||...|||!.!||| TyrAspAsn{Il}++ ++{e}TyrSerAlaLysTrp 28803 : TACGACAAC{AT}gt.........................ag{A}TATAGCGCAAAATGG : 28644 136 : TyrAsnThrAsnProLysThrGlnAlaLeuTyrLeuLeuAlaLeuArgArgSerLeuThr : 155 ||||||!:!:::|||!:!||||||.!!||||||:!!|||||||||||||||||||||||| TyrAsnSerSerProArgThrGlnThrLeuTyrValLeuAlaLeuArgArgSerLeuThr 28643 : TACAACAGTTCGCCGAGAACGCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACT : 28584 156 : ProCysTyrLeuThrAlaGlyGlyLeuIleArgLeuAsnMetGluSerPheSerGluVal : 175 ||| ! ||||||||||||||||||||| !||||||:!!|||!!!|||:!!|||||| ProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGluVal 28583 : CCGCCATTGCTCACTGCGGGAGGACTGATTTCCTTGAATTTGGAGACTTTTGCCGaggta : 28524 vulgar: gi|815925234|ref|XP_012247254.1| 86 175 . LHQN01017803.1 28921 28521 - 285 M 43 129 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 28522 28921 285 - . gene_id 2 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 28791 28921 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28791 28921 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 28789 28790 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 28658 28790 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 28658 28659 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 28522 28657 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28522 28657 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 28522 28921 285 - . alignment_id 2 ; Query gi|815925234|ref|XP_012247254.1| ; Align 28922 87 129 ; Align 28657 131 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 223 Query range: 96 -> 187 Target range: 32978 -> 32577 97 : LysPheIleSerPheLeuValIleGlnPheLeuHisLeuPheCysLeuThrMetGlnGly : 116 ::!!!. !!!!||||||:!! !||| !:!!|||:!!.!.! !||||||!!:|||||| ArgLeuCysThrPheLeuIleAlaGlnThrValHisMetLeuPheLeuThrIleGlnGly 32978 : agATTGTGCACGTTCCTGATCGCACAAACTGTACACATGCTGTTTTTGACGATTCAGGGA : 32921 117 : GlnPheIleIleAsnSerSerAspGluIleTyrAspAlaIleTyr >>>> Target I : 132 ||||||:!:|||:!!||| !||| !:!:|||:!!!.! ! 30 GlnPheValIleAspSerHisAspThrValTyrAsnValCysMet++ 32920 : CAGTTCGTGATCGATTCGCATGATACAGTGTACAATGTGTGTATGgt............. : 32871 133 : ntron 1 >>>> GluAlaSerTrpTyrAsnThrAsnProLysThrGlnAlaLeuTyrL : 147 bp ||||||! !||||||!!.! ! |||||| !||| !||| !!: +-GluAlaIleTrpTyrLysMetProProLysLeuGlnLeuLeuAspV 32870 : ............acGAGGCAATTTGGTATAAGATGCCACCTAAACTTCAGTTGCTAGACG : 32798 148 : euLeuAlaLeuArgArgSerLeuThrProCysTyrLeuThrAlaGlyGlyLeuIleArgL : 167 !!:!!|||||||||!:!|||||||||||| ! ||||||||||||||||||!!:|||| alValAlaLeuArgLysSerLeuThrProProIleLeuThrAlaGlyGlyLeuMetArgL 32797 : TTGTAGCGCTTAGAAAAAGCCTAACTCCTCCTATACTGACGGCGGGAGGGTTGATGCGGT : 32738 168 : euAsnMetGluSerPheSerGlu >>>> Target Intron 2 >>>> ValIleLy : 177 ||:!!:!!.!.||||||:!!:!! 98 bp ::::!:|| euAspLeuAsnSerPheAlaGln++ ++LeuLeuLy 32737 : TAGATTTGAATTCTTTCGCACAGgt.........................agctaCTGAA : 32610 178 : sLeuCysValSerTyrTyrThrValLeuArg : 187 | !||||||||||||||||||!.!|||||| sAlaCysValSerTyrTyrThrAlaLeuArg 32609 : AGCTTGCGTCTCGTATTATACGGCACTGCGA : 32578 vulgar: gi|815925234|ref|XP_012247254.1| 96 187 . LHQN01017803.1 32978 32577 - 223 M 35 105 5 0 2 I 0 26 3 0 2 M 43 129 5 0 2 I 0 94 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 32578 32978 223 - . gene_id 3 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 32874 32978 . - . LHQN01017803.1 exonerate:protein2genome:local exon 32874 32978 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 32872 32873 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 32844 32873 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 32844 32845 . - . intron_id 0 ; splice_site "AC" LHQN01017803.1 exonerate:protein2genome:local cds 32715 32843 . - . LHQN01017803.1 exonerate:protein2genome:local exon 32715 32843 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 32713 32714 . - . intron_id 2 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 32617 32714 . - . intron_id 2 LHQN01017803.1 exonerate:protein2genome:local splice3 32617 32618 . - . intron_id 1 ; splice_site "ag" LHQN01017803.1 exonerate:protein2genome:local cds 32578 32616 . - . LHQN01017803.1 exonerate:protein2genome:local exon 32578 32616 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 32578 32978 223 - . alignment_id 3 ; Query gi|815925234|ref|XP_012247254.1| ; Align 32979 97 105 ; Align 32844 132 129 ; Align 32617 175 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 193 Query range: 130 -> 188 Target range: 22422 -> 22171 131 : TyrGluAlaSerTrpTyrAsnThrAsnProLysThrGlnAlaLeuTyrLeuLeuAlaLeu : 150 ||||||:!!!!!|||||||||:!!::: !||||||||||||||||||:!!||||||||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeu 22422 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTA : 22365 151 : ArgArgSerLeuThrProCysTyrLeuThrAlaGlyGlyLeuIleArgLeuAsnMetGlu : 170 |||!!!||||||!.!||| !! |||||||||||||||!!!|||! !||||||:!::!! ArgSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLys 22364 : CGGAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAG : 22305 171 : SerPheSerGlu >>>> Target Intron 1 >>>> ValIleLysLeuCysValS : 181 !!!||||||||| 77 bp :!!||||||! !! !|||| ThrPheSerGlu++ ++IleIleLysSerSerValS 22304 : ACCTTCTCAGAGgt.........................agATTATAAAATCATCCGTGT : 22195 182 : erTyrTyrThrValLeuArgSer : 188 ||||||||||||||:!!!:!||| erTyrTyrThrValMetGlnSer 22194 : CTTACTATACGGTGATGCAATCG : 22172 vulgar: gi|815925234|ref|XP_012247254.1| 130 188 . LHQN01017803.1 22422 22171 - 193 M 44 132 5 0 2 I 0 73 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 22172 22422 193 - . gene_id 4 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 22291 22422 . - . LHQN01017803.1 exonerate:protein2genome:local exon 22291 22422 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 22289 22290 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 22214 22290 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 22214 22215 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 22172 22213 . - . LHQN01017803.1 exonerate:protein2genome:local exon 22172 22213 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 22172 22422 193 - . alignment_id 4 ; Query gi|815925234|ref|XP_012247254.1| ; Align 22423 131 132 ; Align 22214 175 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 163 Query range: 130 -> 184 Target range: 25043 -> 24881 131 : TyrGluAlaSerTrpTyrAsnThrAsnProLysThrGlnAlaLeuTyrLeuLeuAlaLeu : 150 ||||||:!!!!!|||||||||:!!::: !||||||||||||||||||:!!||||||||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeu 25043 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTA : 24986 151 : ArgArgSerLeuThrProCysTyrLeuThrAlaGlyGlyLeuIleArgLeuAsnMetGlu : 170 |||!!!||||||!.!||| !! |||||||||||||||!!!|||! !||||||:!::!! ArgSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLys 24985 : CGGAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAG : 24926 171 : SerPheSerGluValIleLysLeuCysValSerTyrTyrThr : 184 !!!||||||||||||! !:!! ! :!!..! !!|||:!! ThrPheSerGluValThrArgArgLeuIleGlnAspTyrSer 24925 : ACCTTCTCAGAGGTAACGAGGCGACTAATACAAGATTACTCG : 24882 vulgar: gi|815925234|ref|XP_012247254.1| 130 184 . LHQN01017803.1 25043 24881 - 163 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 24882 25043 163 - . gene_id 5 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 24882 25043 . - . LHQN01017803.1 exonerate:protein2genome:local exon 24882 25043 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 24882 25043 163 - . alignment_id 5 ; Query gi|815925234|ref|XP_012247254.1| ; Align 25044 131 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 159 Query range: 130 -> 175 Target range: 475 -> 340 131 : TyrGluAlaSerTrpTyrAsnThrAsnProLysThrGlnAlaLeuTyrLeuLeuAlaLeuArgA : 152 |||!!:||| !|||||||||!:!!..! !::!:!!||| !|||||||||||||||||||||| TyrAspAlaValTrpTyrAsnSerThrGlnArgSerGlnIleLeuTyrLeuLeuAlaLeuArgA 475 : TACGATGCAGTATGGTACAACAGTACGCAGCGATCGCAAATTTTGTACCTGTTAGCTTTAAGGA : 412 153 : rgSerLeuThrProCysTyrLeuThrAlaGlyGlyLeuIleArgLeuAsnMetGluSerPheSe : 173 |||||||||||||| |||:!!||||||||||||||| !||||||||||||!!!||||| rgSerLeuThrProProLeuLeuSerAlaGlyGlyLeuIleSerLeuAsnMetGluThrPheSe 411 : GGTCTTTAACTCCACCACTGCTTTCTGCAGGAGGACTGATTTCGTTGAATATGGAAACTTTTTC : 349 174 : rGluVal : 175 |:!!||| rLysVal 348 : GAAGGTA : 341 vulgar: gi|815925234|ref|XP_012247254.1| 130 175 . LHQN01017803.1 475 340 - 159 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 341 475 159 - . gene_id 6 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 341 475 . - . LHQN01017803.1 exonerate:protein2genome:local exon 341 475 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 341 475 159 - . alignment_id 6 ; Query gi|815925234|ref|XP_012247254.1| ; Align 476 131 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 137 Query range: 125 -> 177 Target range: 12661 -> 12505 126 : IleTyrAspAlaIleTyrGluAlaSerTrpTyrAsnThrAsnProLysThrGlnAlaLeu : 145 :!!:!! !:!!! !|||.!.|||! !|||||||||!:!:!! !!:!||||||:!!||| ValHisPheSerArgTyrAsnAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeu 12661 : GTCCATTTTTCTAGATACAACGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTG : 12604 146 : TyrLeuLeuAlaLeuArgArgSerLeuThrProCysTyrLeuThrAlaGlyGlyLeuIle : 165 !:!:!!||||||||||||!.!!!!|||:!! !! ! ! :!!|||||||||||||||||| PheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIle 12603 : TTTGTATTAGCATTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATT : 12544 166 : ArgLeuAsnMetGluSerPheSerGluValIleLys : 177 ! !:!!|||:!!:!!|||||||||||||||! !::: ThrMetAsnLeuGlnSerPheSerGluValThrArg 12543 : ACAATGAACTTGCAAAGTTTCTCAGAGGTAACTCGT : 12506 vulgar: gi|815925234|ref|XP_012247254.1| 125 177 . LHQN01017803.1 12661 12505 - 137 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 12506 12661 137 - . gene_id 7 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 12506 12661 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12506 12661 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 12506 12661 137 - . alignment_id 7 ; Query gi|815925234|ref|XP_012247254.1| ; Align 12662 126 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 61 -> 134 Target range: 12915 -> 12696 62 : SerThrHisValThrTyrLeuPheMetCysMetGlyIleValValLeuCysValSerIle : 81 |||:!! ||| ! ! |||!:! ! ! ! :!!:!!:!! ! !!!!||| SerSerSerValArgGlnLeuTyrArgValAlaIleProLeuIleIleLeuArgThrIle 12915 : AGCTCTTCAGTGCGGCAATTATATCGCGTTGCGATACCGCTGATCATCCTCAGAACAATT : 12858 82 : ThrMetAlaGlnIleAlaThrMetGluIleCysValAspPheTyrLysPheIleSerPhe : 101 ..! ! !|||:!::!!!.! !|||||| !!.!!!:||| !||| ! !!!!||| ValTrpLysGlnValSerAsnSerGluIleAsnAlaGluPheAlaLysAspCysThrPhe 12857 : GTTTGGAAACAGGTGTCGAACTCGGAGATTAACGCGGAGTTTGCCAAGGATTGCACATTT : 12798 102 : LeuValIleGlnPheLeuHisLeuPheCysLeuThrMetGlnGlyGlnPheIleIleAsn : 121 :!!|||||||||!!.:!!|||:!!.!!! !||||||:!:||||||||||||:!:|||:!! IleValIleGlnLeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAsp 12797 : ATCGTGATTCAATTGGTACACATACTTTACCTAACTCTTCAAGGACAATTCGTGATCGAC : 12738 122 : SerSerAspGluIleTyrAspAlaIleTyrGluAlaSer : 134 :!!!:!!!:||||||!:!!!::!!!!:!! |||...::: AlaAsnGluGluIlePheGluSerMet***GluValAsn 12737 : GCGAACGAGGAAATCTTCGAATCGATGTAagaagtaaat : 12697 vulgar: gi|815925234|ref|XP_012247254.1| 61 134 . LHQN01017803.1 12915 12696 - 123 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 12697 12915 123 - . gene_id 8 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 12697 12915 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12697 12915 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 12697 12915 123 - . alignment_id 8 ; Query gi|815925234|ref|XP_012247254.1| ; Align 12916 62 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 146 Query range: 98 -> 181 Target range: 26237 -> 25988 99 : CysMetSerGlyPheIleIleIleProLeuSerProValIleLeuAspIleIleSerPro : 118 ||| :!! !|||!!: !:!:|||!!! ! !! !||||||||||||:!!! !||| CysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetPro 26237 : TGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCG : 26180 119 : LeuAsnGluThrArgHisArgGluGlnMetPheArgValThrTyrPheLeuAspGluAsp : 138 ||||||||||||||| ||| ! :!:!:!! !!.! !||||||:!!||||||||| LeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAsp 26179 : TTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGAC : 26120 139 : GlnTyrPheTyrProIleTyrPheHisSerLeuTrpCysAlaPheIleIleThrMetIle : 158 :!!||| !||| !||| |||! !! ! !.! ! !!::!!! ! :!! LysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerVal 26119 : AAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTT : 26060 159 : AlaValThrIleAspSerLeuTyrIleGlnIleValHisHisAspSerAlaLeuPheAla : 178 ! !.!! !|||:!! !|||:!: ! !|||!!.|||! !!!!!.!|||!!.||| PheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAla 26059 : TTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCC : 26000 179 : IleCysGly : 181 |||...||| IleAlaGly 25999 : ATTGCAGGG : 25989 vulgar: gi|815916412|ref|XP_012243371.1| 98 181 . LHQN01017803.1 26237 25988 - 146 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26237 146 - . gene_id 1 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26237 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26237 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26237 146 - . alignment_id 1 ; Query gi|815916412|ref|XP_012243371.1| ; Align 26238 99 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 133 Query range: 96 -> 190 Target range: 29625 -> 29343 97 : LeuSerCysMetSerGlyPheIleIleIleProLeuSerProValIleLeuAspIleIle : 116 :!!! !||| ! !|||! ! !:!: !!:!!!!!||| !:!!||||||:!!||| IlePheCysTyrValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIle 29625 : ATCTTCTGCTACGTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATT : 29568 117 : SerProLeuAsnGluThrArgHisArgGluGlnMetPheArgValThrTyrPheLeuAsp : 136 |||||| !||||||:!!||| !! !!:!:!! !!.!!.!||| !:!!||| SerProLysAsnGluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAsp 29567 : TCGCCGAAAAACGAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGAC : 29508 137 : GluAspGlnTyrPheTyrProIleTyrPheHisSerLeuTrpCysAlaPheIleIleThr : 156 |||!!::!!:!!!:!||| !:!: !|||! !|||! ! !:!!:!: ! GluGluGluHisTyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhe 29507 : GAAGAGGAGCATTACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTT : 29448 157 : MetIleAlaValThrIleAspSerLeuTyrIleGlnIleValHisHisAspSerAlaLeu : 176 .!.:!! !:!!:!! !|||!!!:!!|||!!:.!.||||||!!.|||! !!!!.!||| PheValTyrIleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeu 29447 : TTCGTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTA : 29388 177 : PheAlaIleCysGlyGlnAlaLeuIleThrAlaArgLysSer : 190 !!. !:!!! !||| !!|||:!!.!!! !..! !..!||| LeuAsnLeuSerGly***AlaIlePheArgCysTyrSerSer 29387 : TTGAACCTCTCTGGGTAAGCAATTTTCAGATGTTACTCGAGT : 29344 vulgar: gi|815916412|ref|XP_012243371.1| 96 190 . LHQN01017803.1 29625 29343 - 133 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29344 29625 133 - . gene_id 2 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29344 29625 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29344 29625 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 29344 29625 133 - . alignment_id 2 ; Query gi|815916412|ref|XP_012243371.1| ; Align 29626 97 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 99 -> 170 Target range: 33696 -> 33483 100 : MetSerGlyPheIleIleIleProLeuSerProValIleLeuAspIleIleSerProLeu : 119 :!!|||! !||| !! ! ||||||! !||| !!|||||||||:!!|||||||||||| ValSerValPheSerThrAlaProLeuIleProPheIleLeuAspLeuIleSerProLeu 33696 : GTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTGGACCTAATTTCACCTTTG : 33639 120 : AsnGluThrArgHisArgGluGlnMetPheArgValThrTyrPheLeuAspGluAspGln : 139 ||||||:!!|||! ||| ! ! !:!!:!!.! !! !!:!!!!:!! !|||.!. AsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAsp 33638 : AACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGAC : 33579 140 : TyrPheTyrProIleTyrPheHisSerLeuTrpCysAlaPheIleIleThrMetIleAla : 159 |||!:!||| !:!! :!!!!! ! !||| ! !!: ! !:!::!: ! TyrTyrTyrTyrValValGlyTyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeu 33578 : TACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTT : 33519 160 : ValThrIleAspSerLeuTyrIleGlnIleVal : 170 ||| ! !|||! !:!! |||!!.:!!||| ValGlyAlaAspIleIleMetIleHisLeuVal 33518 : GTCGGCGCTGACATTATTATGATACATCTTGTA : 33484 vulgar: gi|815916412|ref|XP_012243371.1| 99 170 . LHQN01017803.1 33696 33483 - 113 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33484 33696 113 - . gene_id 3 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33484 33696 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33484 33696 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33484 33696 113 - . alignment_id 3 ; Query gi|815916412|ref|XP_012243371.1| ; Align 33697 100 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 291 -> 347 Target range: 32846 -> 32580 292 : TyrArgSerMetTrpTyrAsnMetProIleAsnValGlnArgValLeuHisMetMetGln : 311 |||..!:!!!!:||||||!!.|||||| !!!.:!!||| !:!! ! !:!: !! TyrGluAlaIleTrpTyrLysMetProProLysLeuGlnLeuLeuAspValValAlaLeu 32846 : TACGAGGCAATTTGGTATAAGATGCCACCTAAACTTCAGTTGCTAGACGTTGTAGCGCTT : 32789 312 : MetArgSerSerLysProCysLysLeuThrAlaGlyGlyIleTyrGluMetAsnIleGlu : 331 ! !:!||| !! ||| !! !|||||||||||||||:!: ..!:!::!!:!:.!. ArgLysSerLeuThrProProIleLeuThrAlaGlyGlyLeuMetArgLeuAspLeuAsn 32788 : AGAAAAAGCCTAACTCCTCCTATACTGACGGCGGGAGGGTTGATGCGGTTAGATTTGAAT : 32729 332 : AsnPheGlyThr >>>> Target Intron 1 >>>> ThrPheLysThrCysValS : 342 ::!|||!.! ! 98 bp .!.|||.!!||||||| SerPheAlaGln++ ++LeuLeuLysAlaCysValS 32728 : TCTTTCGCACAGgt.........................agctaCTGAAAGCTTGCGTCT : 32598 343 : erTyrPheThrValLeu : 347 |||||!:!|||!.!||| erTyrTyrThrAlaLeu 32597 : CGTATTATACGGCACTG : 32581 vulgar: gi|815916412|ref|XP_012243371.1| 291 347 . LHQN01017803.1 32846 32580 - 102 M 44 132 5 0 2 I 0 94 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 32581 32846 102 - . gene_id 4 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 32715 32846 . - . LHQN01017803.1 exonerate:protein2genome:local exon 32715 32846 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 32713 32714 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 32617 32714 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 32617 32618 . - . intron_id 0 ; splice_site "ag" LHQN01017803.1 exonerate:protein2genome:local cds 32581 32616 . - . LHQN01017803.1 exonerate:protein2genome:local exon 32581 32616 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 32581 32846 102 - . alignment_id 4 ; Query gi|815916412|ref|XP_012243371.1| ; Align 32847 292 132 ; Align 32617 336 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 291 -> 349 Target range: 22422 -> 22171 292 : TyrArgSerMetTrpTyrAsnMetProIleAsnValGlnArgValLeuHisMetMetGln : 311 |||..!|||! ||||||||| !! !!!...!||| !:!!! ! :!: ! ! TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeu 22422 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTA : 22365 312 : MetArgSerSerLysProCysLysLeuThrAlaGlyGlyIleTyrGluMetAsnIleGlu : 331 !!!!||| !!!.||| ! !|||||||||||||||.!! !:!!|||:!!:!! ArgSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLys 22364 : CGGAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAG : 22305 332 : AsnPheGlyThr >>>> Target Intron 1 >>>> ThrPheLysThrCysValS : 342 !.!|||..! ! 77 bp ! !.!.|||:!!! !|||| ThrPheSerGlu++ ++IleIleLysSerSerValS 22304 : ACCTTCTCAGAGgt.........................agATTATAAAATCATCCGTGT : 22195 343 : erTyrPheThrValLeuLeuSer : 349 |||||!:!||||||:!!! !||| erTyrTyrThrValMetGlnSer 22194 : CTTACTATACGGTGATGCAATCG : 22172 vulgar: gi|815916412|ref|XP_012243371.1| 291 349 . LHQN01017803.1 22422 22171 - 100 M 44 132 5 0 2 I 0 73 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 22172 22422 100 - . gene_id 5 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 22291 22422 . - . LHQN01017803.1 exonerate:protein2genome:local exon 22291 22422 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 22289 22290 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 22214 22290 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 22214 22215 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 22172 22213 . - . LHQN01017803.1 exonerate:protein2genome:local exon 22172 22213 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 22172 22422 100 - . alignment_id 5 ; Query gi|815916412|ref|XP_012243371.1| ; Align 22423 292 132 ; Align 22214 336 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815912130|ref|XP_012241492.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 137 Query range: 46 -> 145 Target range: 14212 -> 13915 47 : IleThrLeuTyrTyrAlaLeuTyrValTyrThrThrValValAlaTyrIleThrIlePro : 66 |||..! !|||! ! ! !!!.! !..! !|||:!! !!:!:!::!!! ||| IleValLysTyrSerIleAlaAsnAlaIleValCysValIleLeuPheValSerThrPro 14212 : ATTGTCAAATATTCGATAGCGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCG : 14155 67 : AlaIleSerLeuLeuIleAspPheIleIleProSerAsnHisSerGluGluLysSerPhe : 86 !.!! ! !!! !:!!:!:|||.!!:!!:!!|||!.!|||.!.|||..!!!: !:!!!:! ValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyr 14154 : GTGACACCGCATATTTTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTAC : 14095 87 : ProIleGluLeuAspTyrGlyValAspThrGlnHisTyrPheTyrTyrLeuPheIleHis : 106 ! ! ! ! !!||| !..!||| !!!. ! ||| ! |||:!!.!!! ||| IleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHis 14094 : ATTTATCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCAC : 14035 107 : SerTyrMetThrIleAlaMetIleAlaAsnLeuIleAlaSerCysAspThrThrTyrMet : 126 ! ! ..!||| !:!!:!: ! !!:!! !!.!:!!|||||||||!:!|||!!: MetAlaSerValIleLeuValValPheTyrValTyrValAlaCysAspThrSerTyrIle 14034 : ATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATA : 13975 127 : LeuTyrAlaGlnHisGlyCysAlaLeuPheAlaIleValSerTyrGluLeuArgThr : 145 ! ! !!.!||||||||||||!.!|||!!.|||:!: !.!. ::::::|||::: TyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly***LysIleArgSer 13974 : TACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaattcgatcg : 13916 vulgar: gi|815912130|ref|XP_012241492.1| 46 145 . LHQN01017803.1 14212 13915 - 137 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13916 14212 137 - . gene_id 1 ; sequence gi|815912130|ref|XP_012241492.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13916 14212 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13916 14212 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13916 14212 137 - . alignment_id 1 ; Query gi|815912130|ref|XP_012241492.1| ; Align 14213 47 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815912130|ref|XP_012241492.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 50 -> 142 Target range: 18456 -> 18180 51 : TyrAlaLeuTyrValTyrThrThrValValAlaTyrIleThrIleProAlaIleSerLeu : 70 !:! !!:!! !!!.!|||! ! ! ! !! !!:!||| !:!:||| ! !!!! ! PheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpSerThrArg 18456 : TTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGTCGACCCGA : 18399 71 : LeuIleAspPheIleIleProSerAsnHisSerGluGluLysSerPheProIleGluLeu : 90 |||:!::!!! !! !!..!||| !!! !... ! !! !! !:!! ! LeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuProValValValProGly 18398 : TTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGA : 18339 91 : AspTyrGlyValAspThrGlnHisTyrPheTyrTyrLeuPheIleHisSerTyrMetThr : 110 !!||| !|||||| ! !.!.|||!:!||||||:!!.!.:!!|||.!! ||| TyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThr 18338 : TATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACA : 18279 111 : IleAlaMetIleAlaAsnLeuIleAlaSerCysAspThrThrTyrMetLeuTyrAlaGln : 130 ||| !!!::!!!.! :!! !..!:!!|||||||||!:!||||||:!! !.!||| IleLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGln 18278 : ATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAA : 18219 131 : HisGlyCysAlaLeuPheAlaIleValSerTyrGlu : 142 ||| !|||!.!|||||||||:!:!.!.!!! ||| HisThrCysGlyLeuPheAlaValAlaGly***Glu 18218 : CACACTTGCGGACTGTTCGCCGTGGCCGGGTGAGAA : 18181 vulgar: gi|815912130|ref|XP_012241492.1| 50 142 . LHQN01017803.1 18456 18180 - 130 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18181 18456 130 - . gene_id 2 ; sequence gi|815912130|ref|XP_012241492.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18181 18456 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18181 18456 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18181 18456 130 - . alignment_id 2 ; Query gi|815912130|ref|XP_012241492.1| ; Align 18457 51 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815923208|ref|XP_003493069.2| PREDICTED: putative odorant receptor 85d, partial [Bombus impatiens] Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 1479 Query range: 0 -> 399 Target range: 4393578 -> 4395874 1 : MetLysGluLeuSerAsnThrSerIleAspTyrTyrIleLeuProAsnArgIlePh : 19 |||||||||||||||!!..!!|||||||||||||||||||||||||||!:!||||| MetLysGluLeuSerLysAlaSerIleAspTyrTyrIleLeuProAsnLysIlePh 4393579 : ATGAAAGAACTCTCTAAAGCGTCGATCGATTATTATATACTACCGAACAAGATCTT : 4393633 20 : eCysSerMetValGlyMetTrpProIleGluGluLysSerSerThrCysSerLysI : 38 |||||||!!:!.!|||||||||||||||!!:||||||||||||||| !!||||||: eCysSerIleAlaGlyMetTrpProIleAspGluLysSerSerThrArgSerLysL 4393634 : TTGTAGTATAGCTGGAATGTGGCCTATCGACGAGAAAAGTTCAACGCGTAGCAAAC : 4393690 39 : lePheAlaTyrIleArgLeuIleLeuAlaLeuIleAlaIleAsnSerIlePheVal : 56 !!|||||||||.!!|||||||||!!!!.!|||! ||||||!:!|||:!!|||||| euPheAlaTyrPheArgLeuIlePheGlyLeuThrAlaIleSerSerValPheVal 4393691 : TATTCGCATACTTCCGTCTGATATTCGGATTAACGGCAATCAGTAGTGTCTTCGTG : 4393744 57 : ProGluIleMetMetIleValSerSerTrpGlyAspIleThrIleLeuAla{G} : 74 |||||||||||| !||||||!!!!:!||||||||||||! !|||||||||{|} ProGluIleMetAlaIleValTrpAsnTrpGlyAspIleArgIleLeuAla{G}+- 4393745 : CCAGAAATTATGGCGATAGTGTGGAATTGGGGTGACATAAGAATCTTGGCA{G}gc : 4393799 75 : >>>> Target Intron 1 >>>> {ly}ValGlyCysValLeuThrThrIleG : 83 311 bp {||}|||||||||||||||||||||:!!| ++{ly}ValGlyCysValLeuThrThrValG 4393800 : .........................ag{GA}GTAGGATGCGTTTTAACAACAGTCG : 4394136 84 : lyGlnLeuLeuPheLysMetIleTyrLeuIleValArgArgGluArgSerTyrArg : 101 ||||||||||||||||||||||||||||||||!.!||||||!!:!:!!!!|||!:! lyGlnLeuLeuPheLysMetIleTyrLeuIleAlaArgArgAspLysThrTyrLys 4394137 : GACagttattattcaaaatgATTTACCTAATAGCGAGAAGGGACAAAACGTACAAG : 4394190 102 : LeuTyrTyrGluIleArgSerLeuTrpAspThrAlaAsnAspSerLysGluMetGl : 120 |||! ! !!|||||||||..!|||||||||:!!:!!:!!||| !!||||||! || LeuCysAsnGluIleArgAspLeuTrpAspSerSerAspAspProLysGluArgGl 4394191 : CTTTGCAACGAAATACGTGATCTATGGGATTCATCCGATGATCCAAAAGAAAGACA : 4394247 121 : nProTyrIleArgValAlaTyrTrpAlaArgIleCysThrIleAlaPheTyrLeuS : 139 | !!||| !..!:!!|||:!!|||||||||! ! !|||||| !||||||! !| nSerTyrGluGluLeuAlaHisTrpAlaArgAsnLeuThrIleIlePheTyrSerS 4394248 : GTCCTACGAAGAGCTCGCTCATTGGGCAAGAAACCTTACGATAATCTTTTACTCGT : 4394304 140 : erCysMetCysAsnValIleThrPheSerIleAlaGlyValValAspTyrPheArg : 157 |||||||||||||||||.!!||||||!!!||||||!.!!.! !!|||||||||! ! erCysMetCysAsnValPheThrPheThrIleAlaAlaAlaPheAspTyrPheThr 4394305 : CCTGCATGTGCAACGTGTTCACATTCACGATTGCCGCAGCCTTCGATTATTTCACG : 4394358 158 : PheGluTyrAsnAlaSerSerThrAspAsnSerArgHisLeuProPheValVal{T : 176 .!!||||||!:!!.!|||..!.!!|||!!.||||||||||||||||||! !|||{| IleGluTyrSerValSerAspAlaAspLysSerArgHisLeuProPheGluVal{T 4394359 : ATCGAATACAGCGTCAGCGATGCTGATAAAAGTCGACACTTGCCCTTCGAAGTC{T : 4394415 177 : r} >>>> Target Intron 2 >>>> {p}TyrGlyThrAspIleSerAlaS : 184 |} 189 bp {|}||||||! !||||||!!! !!| r}++ ++{p}TyrGlyIleAspIleThrProS 4394416 : G}gt.........................ag{G}TATGGAATAGACATCACACCGT : 4394628 185 : erProLysPheGluIleAlaPheIleCysGlnIleLeuSerSerMetValCysAla : 202 |||||:::|||||||||||||||:!!|||||||||:!!:!!||||||:!!|||||| erProArgPheGluIleAlaPheLeuCysGlnIleValAlaSerMetIleCysAla 4394629 : CTCCTCGCTTCGAGATCGCTTTCCTTTGTCAAATCGTAGCATCTATGATCTGCGCA : 4394682 203 : ThrThrIleCysGlyLeuAspAlaSerPheMetThrThrIleLeuHisValSerAl : 221 .!!.!!|||! ||||||||||||!!!|||||||||||||||||||||||||||!. AlaAlaIleSerGlyLeuAspAlaThrPheMetThrThrIleLeuHisValSerGl 4394683 : GCCGCGATCTCAGGCTTGGACGCGACGTTTATGACCACGATTCTACACGTGTCTGG : 4394739 222 : aGlnPheLysLeuIleAsnThrTrpIleSerAsnIleGlyThrGluIleAsnCysA : 240 !||||||||||||||||||! !|||||||||!!.||||||! !||||||||| !. yGlnPheLysLeuIleAsnArgTrpIleSerLysIleGlyIleGluIleAsnIleG 4394740 : TCAATTCAAATTGATCAACAGATGGATCAGTAAGATTGGAATAGAGATAAATATCG : 4394796 241 : snProAsnTyrThrArgLysIleLysIleGluLeuMetArgCysIleArgHisHis : 258 !.|||:!!||| !!||||||:!!||| .!.|||!!:!:!||||||||||||||| luProAspTyrProArgLysLeuLysAlaAsnLeuIleLysCysIleArgHisHis 4394797 : AGCCCGATTATCCGCGAAAATTAAAAGCGAATCTGATCAAATGCATTCGCCATCAC : 4394850 259 : GlnArgMetIle{Hi} >>>> Target Intron 3 >>>> {s}ValValAs : 266 ||||||||||||{:!} 131 bp {!}|||||||| GlnArgMetIle{As}++ ++{n}ValValAs 4394851 : CAACGAATGATA{AA}gt.........................ag{C}GTTGTGAA : 4395005 267 : nAspValAsnAsnLeuPheThrProIleIlePheMetGlnIleLeuThrSerGlyI : 285 ||||||||||||||||...|||||||||||||||||||||:!!||||||||||||| nAspValAsnAsnLeuLeuThrProIleIlePheMetGlnLeuLeuThrSerGlyI 4395006 : CGacgtgaataatttattaacaccCATCATTTTCATGCAACTTCTTACGAGCGGAA : 4395062 286 : leGluIleCysLeuSerGlyTyrAlaMetLeuAspAsnGluAlaGluIleThrAsp : 303 ||||||||||||||||||||!:!|||:!!:!!||||||! .!!! |||||| leGluIleCysLeuSerGlyPheAlaValIleAspAsnGlyThrGly---ThrAsp 4395063 : TAGAGATTTGTTTGAGTGGATTCGCGGTGATCGATAACGGCACCGGT---ACCGAT : 4395113 304 : IleLeuLysCysThrSerTyrPheIleSerValThrValGlnLeuLeuLeuTrpCy : 322 :!!||||||! !..!||||||!!.! !|||:!! !|||||||||||||||||||| LeuLeuLysPheValSerTyrLeuThrSerMetGlyValGlnLeuLeuLeuTrpCy 4395114 : CTTCTCAAATTTGTGTCTTATTTAACCTCGATGGGGGTGCAACTTTTGCTATGGTG : 4395170 323 : sTrpProGlyGluIleLeuIleGlnGluAsnGlnGluValGlyGlnValAlaTyrP : 341 |||||||||||||||||||:!!||||||!:! !|||:!!|||!!.|||!.!|||. sTrpProGlyGluIleLeuValGlnGluSerLeuGluIleGlyHisValValTyrL 4395171 : TTGGCCTGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGTCATGTAGTCTATC : 4395227 342 : heAsnIleProTrpTyrAsnLeuProSerMetTyrGlnArgHisLeuCysLeuMet : 359 !.|||||||||||||||||||||||| !!!!:||||||!:!!!.|||||||||||| euAsnIleProTrpTyrAsnLeuProProIleTyrGlnLysGlnLeuCysLeuMet 4395228 : TAAATATACCATGGTACAATTTACCACCGATTTATCAGAAACAACTTTGCCTGATG : 4395281 360 : IleValArgAlaGlnGlnTyrCysSerIleSerAlaLeuThrPheGlnThrLeuSe : 378 |||:!!||||||||||||||||||||||||!!!||||||||||||||||||||||| IleIleArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPheGlnThrLeuSe 4395282 : ATCATTAGGGCCCAACAGTATTGCAGCATTACGGCATTAACGTTTCAAACGTTGTC : 4395338 379 : rIleHisThrLeuThrThr >>>> Target Intron 4 >>>> ValPheAs : 387 ||||||||||||||||.!! 471 bp |||||||| rIleHisThrLeuThrAla++ ++ValPheAs 4395339 : TATTCACACGTTAACAGCCgt.........................agGTATTCAA : 4395836 388 : nThrAlaAlaSerTyrPheThrLeuLeuArgGlnIle : 399 ||||||||||||||||||||||||||||||||||!!: nThrAlaAlaSerTyrPheThrLeuLeuArgGlnMet 4395837 : TACAGCTGCTTCGTATTTTACTTTGCTGCGACAAATG : 4395874 vulgar: gi|815923208|ref|XP_003493069.2| 0 399 . KQ414784.1 4393578 4395874 + 1479 M 73 219 S 0 1 5 0 2 I 0 307 3 0 2 S 1 2 M 101 303 S 0 2 5 0 2 I 0 185 3 0 2 S 1 1 M 86 258 S 0 2 5 0 2 I 0 127 3 0 2 S 1 1 M 37 111 G 1 0 M 83 249 5 0 2 I 0 467 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4393579 4395874 1479 + . gene_id 1 ; sequence gi|815923208|ref|XP_003493069.2| ; gene_orientation + KQ414784.1 exonerate:protein2genome:local cds 4393579 4393798 . + . KQ414784.1 exonerate:protein2genome:local exon 4393579 4393798 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4393799 4393800 . + . intron_id 1 ; splice_site "GC" KQ414784.1 exonerate:protein2genome:local intron 4393799 4394109 . + . intron_id 1 KQ414784.1 exonerate:protein2genome:local splice3 4394108 4394109 . + . intron_id 0 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394110 4394416 . + . KQ414784.1 exonerate:protein2genome:local exon 4394110 4394416 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4394417 4394418 . + . intron_id 2 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4394417 4394605 . + . intron_id 2 KQ414784.1 exonerate:protein2genome:local splice3 4394604 4394605 . + . intron_id 1 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394606 4394866 . + . KQ414784.1 exonerate:protein2genome:local exon 4394606 4394866 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4394867 4394868 . + . intron_id 3 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4394867 4394997 . + . intron_id 3 KQ414784.1 exonerate:protein2genome:local splice3 4394996 4394997 . + . intron_id 2 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394998 4395358 . + . KQ414784.1 exonerate:protein2genome:local exon 4394998 4395358 . + . insertions 0 ; deletions 1 KQ414784.1 exonerate:protein2genome:local splice5 4395359 4395360 . + . intron_id 4 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4395359 4395829 . + . intron_id 4 KQ414784.1 exonerate:protein2genome:local splice3 4395828 4395829 . + . intron_id 3 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4395830 4395874 . + . KQ414784.1 exonerate:protein2genome:local exon 4395830 4395874 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local similarity 4393579 4395874 1479 + . alignment_id 1 ; Query gi|815923208|ref|XP_003493069.2| ; Align 4393579 1 219 ; Align 4394112 75 303 ; Align 4394607 177 258 ; Align 4394999 264 111 ; Align 4395110 302 249 ; Align 4395830 385 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920792|ref|XP_012245313.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 184 -> 238 Target range: 4395133 -> 4395298 185 : TyrValIleTyrValMetLeuGlnLeuLeuLeuTyrCysTyrMetGlyGluLysLe : 203 |||:!!! !! :!! !:!!||||||||||||!::|||!:: ||||||! || TyrLeuThrSerMetGlyValGlnLeuLeuLeuTrpCysTrpProGlyGluIleLe 4395134 : TATTTAACCTCGATGGGGGTGCAACTTTTGCTATGGTGTTGGCCTGGTGAAATTCT : 4395188 204 : uThrValGluSerThrGluIleAlaAsnThrAlaTyr<->AsnAlaGluTrpTyrA : 221 |..! !|||||| !||||||!.!:!!..!!.!||| ||| ! !||||||| uValGlnGluSerLeuGluIleGlyHisValValTyrLeuAsnIleProTrpTyrA 4395189 : CGTTCAAGAGAGTTTAGAAATAGGTCATGTAGTCTATCTAAATATACCATGGTACA : 4395245 222 : snLeuProProLysAsnAlaArgTrpLeuValIleIleMetCysArgAlaArg : 238 |||||||||||! !! !!:! ||| !:!:!!:!!: !||||||!:! snLeuProProIleTyrGlnLysGlnLeuCysLeuMetIleIleArgAlaGln 4395246 : ATTTACCACCGATTTATCAGAAACAACTTTGCCTGATGATCATTAGGGCCCAA : 4395298 vulgar: gi|815920792|ref|XP_012245313.1| 184 238 . KQ414784.1 4395133 4395298 + 105 M 31 93 G 0 3 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4395134 4395298 105 + . gene_id 1 ; sequence gi|815920792|ref|XP_012245313.1| ; gene_orientation . KQ414784.1 exonerate:protein2genome:local cds 4395134 4395298 . + . KQ414784.1 exonerate:protein2genome:local exon 4395134 4395298 . + . insertions 3 ; deletions 0 KQ414784.1 exonerate:protein2genome:local similarity 4395134 4395298 105 + . alignment_id 1 ; Query gi|815920792|ref|XP_012245313.1| ; Align 4395134 185 93 ; Align 4395230 216 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920800|ref|XP_003492337.2| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 577 Query range: 159 -> 303 Target range: 33637 -> 34680 160 : AlaGlnThrIleGluLysCysPheSerThrLeuLeuLeuLeuGlnMetLeuLeuCysThr : 179 ||| ! !|||||| ! ||||||!:!||||||||||||:!!|||||||||||||||||| AlaThrMetIleGluAspCysPheAsnThrLeuLeuLeuIleGlnMetLeuLeuCysThr 33638 : GCAACTATGATCGAGGATTGTTTCAACACATTGCTATTAATTCAGATGCTGCTCTGTACC : 33695 180 : IleGluIleCysPheGlnGlyPheLeuPhePheAsn >>>> Target Intron 1 > : 192 :!!||||||||||||||||||||||||||||||:!! 74 bp ValGluIleCysPheGlnGlyPheLeuPhePheAsp++ 33696 : GTCGAAATATGCTTTCAAGGCTTTTTATTCTTCGATgt...................... : 33736 193 : >>> ValLeuIleLysAsnGluAsnGlyIlePheAsnPheGlnLeuValPhePheValL : 210 |||:!!:!!:!!||||||!!.|||||||||||| ! ||||||:!!|||||||||| ++ValIleLeuGluAsnGluLysGlyIlePheAsnValGlnLeuLeuPhePheValL 33737 : ...agGTGATACTAGAAAACGAGAAAGGAATATTCAACGTGCAATTGCTTTTCTTCGTGC : 33862 211 : euPheValCysPheIleLeuValHisValTyrLeuTyrCysTyrIleGlyGluMetLeuL : 230 ||||||||||||||||||||||||||:!!|||:!!||||||||||||||||||||||||| euPheValCysPheIleLeuValHisIleTyrIleTyrCysTyrIleGlyGluMetLeuL 33863 : TGTTCGTATGCTTCATCCTTGTACACATCTACATTTATTGTTACATAGGAGAGATGCTAC : 33922 231 : euIleGln >>>> Target Intron 2 >>>> SerArgGluMetSerAsnSerAl : 240 ||! !!!. 454 bp ||||||||||||||||||||||| euThrHis+- ++SerArgGluMetSerAsnSerAl 33923 : TCACACATgc.........................agAGCAGAGAAATGAGCAATTCCGC : 34406 241 : aTyrGluSerAsnTrpTyrAsnValSerProSerGlnThrLysCysLeuLeuPheIleMe : 260 ||||||||||||||||||||||||||||||| !!:!!.!!|||||||||||||||||||| aTyrGluSerAsnTrpTyrAsnValSerProProGluAlaLysCysLeuLeuPheIleMe 34407 : TTACGAGTCAAACTGGTACAACGTCTCACCTCCAGAAGCCAAGTGCCTTTTATTTATCAT : 34466 261 : tAsnArgSerThrArgProLeuCysLeuThrAlaGlyLysPheGlyIlePheSerMetGl : 280 |:!!|||!!!.!!||||||||||||||||||||||||||||||.!!! !||||||||||| tHisArgThrAlaArgProLeuCysLeuThrAlaGlyLysPheSerThrPheSerMetGl 34467 : GCACAGAACCGCTCGTCCACTTTGCTTGACTGCAGGAAAATTCAGTACCTTCTCCATGGA : 34526 281 : uLeuPheSerThr >>>> Target Intron 3 >>>> IleLeuLysThrAlaMet : 290 |:!!||||||||| 83 bp |||||||||||||||||| uMetPheSerThr++ ++IleLeuLysThrAlaMet 34527 : AATGTTCAGTACTgt.........................agattcTGAAAACAGCAATG : 34639 291 : GlyTyrLeuSerValLeuLeuThrValAlaAsnAsnAsp : 303 |||||||||||||||||||||||||||.!!..!!:!||| GlyTyrLeuSerValLeuLeuThrValThrGlySerAsp 34640 : GGATATCTTTCAGTTCTCCTCACAGTTACAGGTAGCGAT : 34680 vulgar: gi|815920800|ref|XP_003492337.2| 159 303 . KQ414804.1 33637 34680 + 577 M 32 96 5 0 2 I 0 70 3 0 2 M 41 123 5 0 2 I 0 450 3 0 2 M 52 156 5 0 2 I 0 79 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33638 34680 577 + . gene_id 1 ; sequence gi|815920800|ref|XP_003492337.2| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33638 33733 . + . KQ414804.1 exonerate:protein2genome:local exon 33638 33733 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33734 33735 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 33734 33807 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 33806 33807 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 33808 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33808 33930 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 2 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 1 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 3 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 3 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 2 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34680 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34680 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33638 34680 577 + . alignment_id 1 ; Query gi|815920800|ref|XP_003492337.2| ; Align 33638 160 96 ; Align 33808 192 123 ; Align 34385 233 156 ; Align 34624 285 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920800|ref|XP_003492337.2| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 570 Query range: 0 -> 158 Target range: 31134 -> 31608 1 : MetLysSerPheTyrAspAspTrpArgSerAlaLysThrGluGluGluLysThrAlaMet : 20 !!:|||||||||||||||||||||!:!!!!:!!!:!|||:::||||||||| ..!||| IleLysSerPheTyrAspAspTrpLysThrSerArgThrLysGluGluLysGluThrMet 31135 : ATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACcaaggaggagaaggagacCATG : 31192 21 : LeuLysMetAlaLysProAlaAsnPheIleSerValTrpCysSerIleLeuThrLeuThr : 40 ||||||! |||||| !|||!!. ||||||:!!|||||||||:!!|||||||||||| LeuLysArgAlaLysPheAlaLysGlnIleSerIleTrpCysSerValLeuThrLeuThr 31193 : TTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGGTGCTCAGTATTAACCTTGACC : 31252 41 : MetValThrAlaTyrLeuSerLeuArgSerIleSerValTyrLeuSerAspArgLeuHis : 60 |||||||||!.!|||||||||||||||:!! ! !:!!|||! ! !|||||| !:!! MetValThrValTyrLeuSerLeuArgAlaTrpIleIleTyrGlnLeuAspArgAlaAsn 31253 : ATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATCTACCAGCTTGATAGGGCAAAC : 31312 61 : GluAsnArgAspHisLeuSerLeuTyrProGlyTyrPheProTyrAsnIleArgProVal : 80 :!!!!.!:!|||!.!||| !|||||||||||||||||||||!:!:!!|||||||||:!! GlnLysGlnAspArgLeuLeuLeuTyrProGlyTyrPheProPheAspIleArgProIle 31313 : CAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTATTTTCCCTTCGATATTCGTCCAATA : 31372 81 : ProIleLeuLeuMetThrAsnPheAlaGlnValIleAlaGlyTyrSerAlaThrIleCys : 100 !:!!|||||| !|||||||||!.!||||||:!!|||!.!|||||||||..!||| !! GlyValLeuLeuSerThrAsnPheGlyGlnValLeuAlaAlaTyrSerAlaValIleSer 31373 : GGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCAGCGTATTCCGCTGTTATCAGT : 31432 101 : TyrThrThrValAspThrPheIleAlaMetLeuValLeuHisIleCysGlyGlnPheGlu : 120 |||||||||||||||||||||||||||||||||:!!:!!||||||||||||||||||||| TyrThrThrValAspThrPheIleAlaMetLeuIleMetHisIleCysGlyGlnPheGlu 31433 : TACACCACCGTGGATACATTTATCGCGATGCTGATAATGCACATATGCGGACAATTTGAG : 31492 121 : IleLeuArgLysLysLeuThrArgLeuLeuAspGlyGluGluGlyAsnArgSerIleAsp : 140 |||||||||:!!|||||| !||||||:!!|||! !|||:!! !!.!||||||:!:||| IleLeuArgGlnLysLeuArgArgLeuMetAspAspGluLysLysThrArgSerValAsp 31493 : ATACTGAGACAGAAATTACGAAGGCTGATGGATGACGAGAAGAAGACCAGAAGCGTGGAT : 31552 141 : GluPheArgLysGluLeuValTrpIleIleThrLysHisGluHisLeuAsnTrp : 158 |||.!!!:!||||||||||||! !|||||| !!:!|||||||||||||||||| GluIleGlnLysGluLeuValLeuIleIleGluArgHisGluHisLeuAsnTrp 31553 : GAGATTCAGAAGGAGCTGGTTTTGATCATAGAGAGGCATGAGCATCTAAATTgg : 31608 vulgar: gi|815920800|ref|XP_003492337.2| 0 158 . KQ414804.1 31134 31608 + 570 M 158 474 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31135 31608 570 + . gene_id 2 ; sequence gi|815920800|ref|XP_003492337.2| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31135 31608 . + . KQ414804.1 exonerate:protein2genome:local exon 31135 31608 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 31135 31608 570 + . alignment_id 2 ; Query gi|815920800|ref|XP_003492337.2| ; Align 31135 1 474 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920800|ref|XP_003492337.2| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 295 Query range: 159 -> 285 Target range: 51512 -> 52050 160 : AlaGlnThrIleGluLysCysPheSerThrLeuLeuLeuLeuGlnMetLeuLeuCysThr : 179 |||:!!|||||||||:::||||||!:!! !:!!||||||:!!||||||||| !|||||| AlaGluThrIleGluArgCysPheAsnMetMetLeuLeuIleGlnMetLeuGlyCysThr 51513 : GCAGAAACGATAGAGCGTTGTTTCAATATGATGCTTCTGATTCAGATGCTCGGTTGTACC : 51570 180 : IleGluIleCysPheGlnGlyPheLeuPhePheAsn >>>> Target Intron 1 > : 192 :!!:!!:!!||||||||| !!|||! ! !!! 100 bp ValGlnLeuCysPheGlnCysPheGlnAlaValMet++ 51571 : GTTCAGCTATGCTTCCAGTGTTTCCAAGCAGTCATGgt...................... : 51611 193 : >>> ValLeuIleLysAsnGluAsnGlyIlePheAsnPheGlnLeuValPhePheValL : 210 !:!! !:!!.!. !:!!! !! !... ||||||::::::|||!!.:!!! ++SerIleAspGluGluIleAspGluAsnMetIlePheGlnIleLeuPheLeuLeuP 51612 : ...agTCAATTGACGAGGAAATAGATGAAAACAtgattttccaaattctctTTTTGCTGT : 51763 211 : euPheValCysPheIleLeuValHisValTyrLeuTyrCysTyrIleGlyGluMetLeuL : 230 !!!:!||| !!:!:!::!!:!!!!.:!!!:!||||||||||||:!:||||||! !|||! heTyrValValTyrValMetLeuGlnLeuPheLeuTyrCysTyrValGlyGluArgLeuS 51764 : TCTACGTGGTTTACGTGATGCTACAATTATTCTTGTATTGTTACGTGGGTGAAAGGCTTT : 51823 231 : euIleGln >>>> Target Intron 2 >>>> SerArgGluMetSerAsnSerAl : 240 !:!!:!! 60 bp ||| !|||!!::!!|||:!!|| erValGlu++ ++SerValGluIleAlaAsnAlaAl 51824 : CCGTTGAGgt.........................agAGCGTTGAAATAGCTAACGCGGC : 51913 241 : aTyrGluSerAsnTrpTyrAsnValSerProSerGlnThrLysCysLeuLeuPheIleMe : 260 ||||!!:|||.!.|||||||||:!!||||||!.!.!..!!|||! ||||||.!!||||| aTyrAspSerGluTrpTyrAsnLeuSerProLysAsnAlaLysLeuLeuLeuIleIleMe 51914 : ATACGATTCTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTGCTACTAATTATCAT : 51973 261 : tAsnArgSerThrArgProLeuCysLeuThrAlaGlyLysPheGlyIlePheSerMetGl : 280 |...|||:!!! ! !|||||| :!!|||||||||!:!|||!.!! !|||!!!:!! tArgArgAlaArgLeuProLeuGlnIleThrAlaGlyArgPheAlaThrPheThrLeuMe 51974 : GCGACGAGCCAGGTTACCTCTACAAATCACTGCAGGTAGATTTGCTACTTTCACTCTGAT : 52033 281 : uLeuPheSerThrIle : 285 !|||!:!||| !:!: tLeuTyrSerGlnVal 52034 : GCTGTATTCACAGGTa : 52050 vulgar: gi|815920800|ref|XP_003492337.2| 159 285 . KQ414804.1 51512 52050 + 295 M 32 96 5 0 2 I 0 96 3 0 2 M 41 123 5 0 2 I 0 56 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51513 52050 295 + . gene_id 3 ; sequence gi|815920800|ref|XP_003492337.2| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51513 51608 . + . KQ414804.1 exonerate:protein2genome:local exon 51513 51608 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51609 51610 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51609 51708 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51707 51708 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 51709 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51709 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 1 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52050 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52050 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51513 52050 295 + . alignment_id 3 ; Query gi|815920800|ref|XP_003492337.2| ; Align 51513 160 96 ; Align 51709 192 123 ; Align 51892 233 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920800|ref|XP_003492337.2| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 0 -> 129 Target range: 36572 -> 36953 1 : MetLysSerPheTyrAspAspTrpArgSerAlaLysThrGluGluGluLysThrAlaMet : 20 |||!....!.!.!:!||||||||| !..! !!! !!|||! !!!:::: !.!!||| MetSerGlnIlePheAspAspTrpAlaGluProIleProGluValAspArgHisThrMet 36573 : ATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACGATG : 36630 21 : LeuLysMetAlaLysProAlaAsnPheIleSerValTrpCysSerIleLeuThrLeuThr : 40 ||||||! |||||| !::!....!.||||||:!! |||||||||||||||! !..! LeuLysThrAlaLysIleSerArgMetIleSerIleValCysSerIleLeuThrTyrVal 36631 : CTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTCTGTTCTATCCTGACGTATGTC : 36690 41 : MetValThrAlaTyrLeuSerLeuArgSerIleSerValTyrLeuSerAspArgLeuHis : 60 |||||| !|||!:!|||||||||!:! |||!!! ! !:!!..!:!!! !! !.!. MetValLeuAlaPheLeuSerLeuGln---IleTrpSerSerMetGlnAsnThrSerGlu 36691 : ATGGTTTTGGCCTTCTTGTCACTTCAA---ATTTGGAGCAGCATGCAAAACACCTCGGAG : 36747 61 : GluAsnArgAspHisLeuSerLeuTyrProGlyTyrPheProTyrAsnIleArgProVal : 80 ||| !! ||| ||| !|||!.! |||||||||:!!! !.! ! ! PheAsnValGlyGlyLeu---LeuIleProAlaThrPheProTyrAspThrAsnLysSer 36748 : TTCAACGTAGGAGGACTA---CTTATCCCGGCCACATTTCCATACGACACGAATAAAAGT : 36804 81 : ProIleLeuLeuMetThrAsnPheAlaGlnValIleAlaGlyTyrSerAlaThrIleCys : 100 |||! !! ! !!!:||| .!!!.!||| !!:!:!.! ! ! !::!.!!|||||| ProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCys 36805 : CCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGT : 36864 101 : TyrThrThrValAspThrPheIleAlaMetLeuValLeuHisIleCysGlyGlnPheGlu : 120 |||:!! ! !!|||||||||:!!|||:!:||||||||||||||||||||||||!!. TyrSerCysPheAspThrPheValAlaValLeuValLeuHisIleCysGlyGlnLeuThr 36865 : TATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACT : 36924 121 : IleLeuArgLysLysLeuThrArgLeu : 129 :!!||||||! ||| !!.!||| ValLeuArgIleAlaLeuGluAsnLeu 36925 : GTTCTCCGCATTGCCCTCGAGAATCTT : 36953 vulgar: gi|815920800|ref|XP_003492337.2| 0 129 . KQ414804.1 36572 36953 + 205 M 49 147 G 1 0 M 16 48 G 1 0 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36573 36953 205 + . gene_id 4 ; sequence gi|815920800|ref|XP_003492337.2| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36573 36953 . + . KQ414804.1 exonerate:protein2genome:local exon 36573 36953 . + . insertions 0 ; deletions 2 KQ414804.1 exonerate:protein2genome:local similarity 36573 36953 205 + . alignment_id 4 ; Query gi|815920800|ref|XP_003492337.2| ; Align 36573 1 147 ; Align 36720 51 48 ; Align 36768 68 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920800|ref|XP_003492337.2| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 67 -> 129 Target range: 44877 -> 45063 68 : LeuTyrProGlyTyrPheProTyrAsnIleArgProValProIleLeuLeuMetThrAsn : 87 |||!:!! !!.!||||||||||||:!!! ! ! ! !|||! !! ! !.!.||| LeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThrVal 44878 : CTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACAGTG : 44935 88 : PheAlaGlnValIleAlaGlyTyrSerAlaThrIleCysTyrThrThrValAspThrPhe : 107 .!!||||||:!!||||||!.!!:!! !|||.!!! ! ||||||.!!|||||||||||| IleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThrPhe 44936 : ATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACTTTC : 44995 108 : IleAlaMetLeuValLeuHisIleCysGlyGlnPheGluIleLeuArgLysLysLeuThr : 127 |||!.!||||||:!!||||||:!!|||||||||.!!..!! !||||||!!.:!!!!! ! IleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArgAsnGluPheGly 44996 : ATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGAAACGAATTCGGT : 45055 128 : ArgLeu : 129 !:!||| LysLeu 45056 : AAGCTT : 45063 vulgar: gi|815920800|ref|XP_003492337.2| 67 129 . KQ414804.1 44877 45063 + 145 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44878 45063 145 + . gene_id 5 ; sequence gi|815920800|ref|XP_003492337.2| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44878 45063 . + . KQ414804.1 exonerate:protein2genome:local exon 44878 45063 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44878 45063 145 + . alignment_id 5 ; Query gi|815920800|ref|XP_003492337.2| ; Align 44878 68 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920800|ref|XP_003492337.2| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 223 -> 285 Target range: 39938 -> 40124 224 : TyrIleGlyGluMetLeuLeuIleGlnSerArgGluMetSerAsnSerAlaTyrGluSer : 243 |||||| :::::: ... |||! !! !!!:.!!.!.|||||||||!!:!!! TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 244 : AsnTrpTyrAsnValSerProSerGlnThrLysCysLeuLeuPheIleMetAsnArgSer : 263 |||||||||:!!:!! !!|||!.!!!..!! ! |||:!!.!!:!:!!: !|||:!! AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 264 : ThrArgProLeuCysLeuThrAlaGlyLysPheGlyIlePheSerMetGluLeuPheSer : 283 ! ! !!!!! :!!|||||||||||||||.!! !||||||:!:|||||||||!:! GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsn 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAAC : 40116 284 : ThrIle : 285 .!!:!: AlaVal 40117 : GCTGTG : 40124 vulgar: gi|815920800|ref|XP_003492337.2| 223 285 . KQ414804.1 39938 40124 + 109 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40124 109 + . gene_id 6 ; sequence gi|815920800|ref|XP_003492337.2| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39939 40124 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40124 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40124 109 + . alignment_id 6 ; Query gi|815920800|ref|XP_003492337.2| ; Align 39939 224 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920792|ref|XP_012245313.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 477 Query range: 131 -> 277 Target range: 51506 -> 52358 132 : ArgPheAlaGluThrIleGluLysSerPheAsnMetMetLeuLeuPheGlnMetLeuGly : 151 |||||||||||||||||||||:::!!!||||||||||||||||||.!!|||||||||||| ArgPheAlaGluThrIleGluArgCysPheAsnMetMetLeuLeuIleGlnMetLeuGly 51507 : AGGTTCGCAGAAACGATAGAGCGTTGTTTCAATATGATGCTTCTGATTCAGATGCTCGGT : 51564 152 : CysThrThrGlnLeuCysSerGlnThrTyrGlnValLeuMet >>>> Target Intr : 166 ||||||..!|||||||||! !||| !!:!|||!.!:!!||| 100 bp CysThrValGlnLeuCysPheGlnCysPheGlnAlaValMet++ 51565 : TGTACCGTTCAGCTATGCTTCCAGTGTTTCCAAGCAGTCATGgt................ : 51611 167 : on 1 >>>> SerLeuGlyGluGluAlaIleGluHisMetIleLeuGlnIleThrPheL : 182 |||:!!! !|||||| ! !|||:!!||||||...|||||| |||| ++SerIleAspGluGluIleAspGluAsnMetIlePheGlnIleLeuPheL 51612 : .........agTCAATTGACGAGGAAATAGATGAAAACAtgattttccaaattctctTTT : 51757 183 : euLeuIleTyrValIleTyrValMetLeuGlnLeuLeuLeuTyrCysTyrMetGlyGluL : 202 |||||.!!||||||:!!||||||||||||||||||!!!||||||||||||:!!||||||! euLeuPheTyrValValTyrValMetLeuGlnLeuPheLeuTyrCysTyrValGlyGluA 51758 : TGCTGTTCTACGTGGTTTACGTGATGCTACAATTATTCTTGTATTGTTACGTGGGTGAAA : 51817 203 : ysLeuThrValGlu >>>> Target Intron 2 >>>> SerThrGluIleAlaAs : 212 :!|||:!!|||||| 60 bp |||..!||||||||||| rgLeuSerValGlu++ ++SerValGluIleAlaAs 51818 : GGCTTTCCGTTGAGgt.........................agAGCGTTGAAATAGCTAA : 51907 213 : nThrAlaTyrAsnAlaGluTrpTyrAsnLeuProProLysAsnAlaArgTrpLeuValIl : 232 |.!!||||||:!!:!!||||||||||||||| !!||||||||||||!:!! !|||:!!|| nAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLysAsnAlaLysLeuLeuLeuIl 51908 : CGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTGCTACTAAT : 51967 233 : eIleMetCysArgAlaArgSerSerProLeuGlnIleThrAlaGlyArgPheCysCysPh : 252 ||||||| ! ||||||||| ! !|||||||||||||||||||||||||||..! !|| eIleMetArgArgAlaArg---LeuProLeuGlnIleThrAlaGlyArgPheAlaThrPh 51968 : TATCATGCGACGAGCCAGG---TTACCTCTACAAATCACTGCAGGTAGATTTGCTACTTT : 52024 253 : eThrLeuValLeuTyrSerGln >>>> Target Intron 3 >>>> ValLeuLys : 262 |||||||:!!|||||||||||| 251 bp :!!|||||| eThrLeuMetLeuTyrSerGln++ ++IleLeuLys 52025 : CACTCTGATGCTGTATTCACAGgt.........................agATTTTAAAA : 52305 263 : ThrSerMet<-><->GlyTyrValSerValLeuLeuAlaMetLysAsnLys : 277 ||||||:!! ||||||||||||||||||! !||||||||| !!||| ThrSerValGlyLysGlyTyrValSerValLeuTyrAlaMetLysTyrLys 52306 : ACCTCGGTGGGAAAAGGTTATGTTTCTGTTCTATACGCAATGAAATATAAA : 52358 vulgar: gi|815920792|ref|XP_012245313.1| 131 277 . KQ414804.1 51506 52358 + 477 M 34 102 5 0 2 I 0 96 3 0 2 M 41 123 5 0 2 I 0 56 3 0 2 M 32 96 G 1 0 M 20 60 5 0 2 I 0 247 3 0 2 M 6 18 G 0 6 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51507 52358 477 + . gene_id 1 ; sequence gi|815920792|ref|XP_012245313.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51507 51608 . + . KQ414804.1 exonerate:protein2genome:local exon 51507 51608 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51609 51610 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51609 51708 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51707 51708 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 51709 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51709 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 1 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52047 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52047 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local splice5 52048 52049 . + . intron_id 3 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 52048 52298 . + . intron_id 3 KQ414804.1 exonerate:protein2genome:local splice3 52297 52298 . + . intron_id 2 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 52299 52358 . + . KQ414804.1 exonerate:protein2genome:local exon 52299 52358 . + . insertions 6 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51507 52358 477 + . alignment_id 1 ; Query gi|815920792|ref|XP_012245313.1| ; Align 51507 132 102 ; Align 51709 166 123 ; Align 51892 207 96 ; Align 51988 240 60 ; Align 52299 260 18 ; Align 52323 266 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920792|ref|XP_012245313.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 445 Query range: 1 -> 152 Target range: 44140 -> 45195 2 : LeuLysPheMetGlyIleTrpProGluGluArgLysTrpAsnArgProSerSerTyrPhe : 21 :!!!:!||||||||||||||||||||||||||||||||||||!:!||||||||||||.!. MetArgPheMetGlyIleTrpProGluGluArgLysTrpAsnGlnProSerSerTyrLeu 44141 : ATGAGGTTCATGGGAATCTGGCCagaggaaagaaaatggaaCCAACCATCGAGTTACCTA : 44198 22 : ValLeuLeuProCysIleValMetValCysPheIleCysAlaProGlnThrPheAsnLeu : 41 !.!|||:!!||| !:!!:!!||| !! !|||:!!|||!.!|||||||||.!!|||||| AlaLeuIleProValLeuMetMetPheLeuPheValCysValProGlnThrIleAsnLeu 44199 : GCTCTAATACCAGTTCTCATGATGTTTCTCTTCGTTTGTGTCCCACAAACGATCAATCTT : 44258 42 : SerIleIleAlaGlyAspSerAspLeuValIleGluAsnLeuSerThr<->AsnIleThr : 60 |||.!!||| !||||||! !:!!||||||:!!||||||||||||! ! ||||||||| SerPheIleTrpGlyAspPheAsnLeuValValGluAsnLeuSerMetGlyAsnIleThr 44259 : TCATTCATCTGGGGTGATTTTAATTTAGTGGTAGAGAATCTATCCATGGGTAACATAACA : 44318 61 : IleThrIleSerLeuMetLysThrMetAlaValTrpMetLysGlyLys{P} >>>> Ta : 77 |||||||||||||||:!!||||||!!:||| !!|||!!:!!.||||||{|} IleThrIleSerLeuLeuLysThrIleAlaPheTrpIleAsnGlyLys{P}++ 44319 : ATCACTATTTCCCTTCTGAAGACCATCGCTTTTTGGATCAACGGCAAA{C}gt....... : 44372 78 : rget Intron 1 >>>> {ro}IleThrTyrThrThrValAspThrPheValValLeu : 89 599 bp {||}! !|||||||||.!!||||||||||||:!!|||:!! ++{ro}ThrThrTyrThrAlaValAspThrPheIleValMet 44373 : ..................ag{CC}ACCACATACACAGCCGTCGATACTTTCATTGTAATG : 45004 90 : LeuIlePheHisValCysGlyGlnLeuSerIleLeuArgAspAspLeuArgLysIleHis : 109 ||||||.!.|||||||||||||||||||||! !||||||:!!!!:!!! !!|||:!!!!. LeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArgAsnGluPheGlyLysLeuGln 45005 : TTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGAAACGAATTCGGTAAGCTTCAA : 45064 110 : SerCysAspAspLysAsnValGluIleLysLeuGlnGlnIleValGlnLysHisValTyr : 129 :!!|||||| ! !!..:!!:!! |||||| !:!!|||||||||||||||! !||| AlaCysAspLysValThrLeuGlnAlaLysLeuGlyLysIleValGlnLysHisGluTyr 45065 : GCATGCGATAAAGTAACATTACAGGCGAAGTTGGGGAAAATCGTGCAGAAACACGAATAT : 45124 130 : IleAsnArgPheAlaGluThrIleGluLysSerPheAsnMetMetLeuLeuPheGlnMet : 149 :!!|||||||||!.!..! ! ||| ... ::: ::: ||| ... LeuAsnArgPheValSerLeuHisTrpLysTyrLeuPheValLysIleSerPheThrPhe 45125 : CTTAACAGGTTCGTATCATTGCactggaaatatttatttgtgaaaatttcttttacattc : 45184 150 : LeuGlyCys : 152 ! ! ||| Cys***Cys 45185 : tGCTGatgt : 45195 vulgar: gi|815920792|ref|XP_012245313.1| 1 152 . KQ414804.1 44140 45195 + 445 M 56 168 G 0 3 M 19 57 S 0 1 5 0 2 I 0 595 3 0 2 S 1 2 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44141 45195 445 + . gene_id 2 ; sequence gi|815920792|ref|XP_012245313.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 44141 44369 . + . KQ414804.1 exonerate:protein2genome:local exon 44141 44369 . + . insertions 3 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 44370 44371 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 44370 44968 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 44967 44968 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 44969 45195 . + . KQ414804.1 exonerate:protein2genome:local exon 44969 45195 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44141 45195 445 + . alignment_id 2 ; Query gi|815920792|ref|XP_012245313.1| ; Align 44141 2 168 ; Align 44312 58 57 ; Align 44971 78 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920792|ref|XP_012245313.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 244 Query range: 1 -> 203 Target range: 35939 -> 37919 2 : LeuLysPheMetGlyIleTrpProGluGluArgLysTrpAsnArg<-><-><-><->Pro : 17 |||... ! :!:|||:!:||||||||| !|||||| !::!!.! !! LeuSerValLeuGlyValTrpProGluProArgLysMetSerAsnLeuSerArgPheAla 35940 : TTATCTGTACTTGGCGTGTGGCCAGAACCGAGAAAGATGTCTAACCTGTCACGATTCGCG : 35997 18 : SerSerTyrPheValLeuLeuProCysIleValMetValCysPheIleCysAlaProGln : 37 |||!:!!:!.!. !!! !!!! !! !:!::!!! !||| !|||||||||||||||||| SerAsnPheIlePheTrpPheThrThrLeuIleThrValValPheIleCysAlaProGln 35998 : TCTAACTTTATATTCTGGTTCACGACTTTGATAACGGTTGTCTTCATATGCGCTCCCCAA : 36057 38 : ThrPheAsnLeuSerIleIleAlaGlyAspSerAspLeuValIleGluAsnLeuSerThr : 57 ! ! :!!||| !::: ::: ::: ||| !||||||||||||||||||..! MetThrHisLeuValLeuLysSerThrAsnLeuAspGluValIleGluAsnLeuSerVal 36058 : ATGACGCATTTGGTAttaaaatcgacgaatttgGACGAGGTGATAGAGAATCTGTCGGTC : 36117 58 : AsnIleThrIleThrIleSerLeuMetLysThrMetAlaValTrpMetLysGlyLys{P} : 77 |||||| !!!!: !.!!|||||| ||| !!!: !:!! ! ::: !!|||{ } AsnIleProMetLeuPheSerLeuGlyLysGlnIleIleLeuArgTyrArgArgLys{A} 36118 : AACATACCGATGCTCTTCTCATTGGGCAAGCAAATCATTCTGCGTTATCGTAGAAAA{G} : 36177 78 : >>>> Target Intron 1 >>>> {ro}IleThrTyrThrThrValAspThrPhe : 86 681 bp {!!}||| !|||:!! ! !!||||||||| ++ -+{la}IleCysTyrSerCysPheAspThrPhe 36178 : gt.........................cg{CG}ATATGTTATTCCTGCTTCGATACGTTC : 36885 87 : ValValLeuLeuIlePheHisValCysGlyGlnLeuSerIleLeuArgAspAspLeuArg : 106 |||!.!:!!|||:!:!!.|||:!!||||||||||||!!!:!!|||||| !! !|||..! ValAlaValLeuValLeuHisIleCysGlyGlnLeuThrValLeuArgIleAlaLeuGlu 36886 : GTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTCGAG : 36945 107 : LysIleHisSerCysAspAspLysAsnValGluIleLysLeuGlnGlnIleValGlnLys : 126 !!.:!! !!:! |||:!! ! ! ! !|||!!!|||:!! !:!! ! ! AsnLeuAlaAsnThrThrIleLysAspAsnTyrSerLysPheGlnGluArgLeuGlyTyr 36946 : AATCTTGCTAACACGACAATAAAAGACAACTACAGCAAGTTCCAAGAACGATTAGGATAC : 37005 127 : HisValTyrIleAsn{Ar} >>>> Target Intron 2 >>>> {g}PheAlaGlu : 135 !|||:!!! .!.{!:} 546 bp {!}::!|||! ! IleValHisArgGln{Ly}-- ++{s}TyrAlaVal 37006 : ATTGTGCACAGGCAG{AA}tc.........................ag{g}taCGCTGTG : 37578 136 : ThrIleGluLysSerPheAsnMetMetLeuLeuPheGlnMetLeuGlyCysThrThrGln : 155 ! !:!:||| ! !!!||||||!!:||||||||| !!|||! ||| !||||||.!!..! IleValGluAspCysPheAsnIleMetLeuLeuValGlnThrLeuMetCysThrAlaMet 37579 : ATAGTGGAAGATTGCTTCAACATCATGCTGCTCGTTCAAACTTTAATGTGCACCGCCATG : 37638 156 : LeuCysSerGlnThrTyrGlnValLeuMet >>>> Target Intron 3 >>>> S : 166 ||||||! ! !|||!:::!!:!!! 135 bp | LeuCysMetThrGlyTyrArgMetMetThr++ ++S 37639 : CTCTGTATGACTGGATATCGCATGATGACCgt.........................agT : 37806 167 : erLeuGlyGluGluAlaIleGluHisMetIleLeuGlnIleThrPheLeuLeuIleTyrV : 186 ||:!!..!:!!||| ! !!: !|||:!! ::: |||...::: :!!| erValAsnGlnGluGlnGluAspValProIleIleGlyValIlePhePheIleSerHisV 37807 : CTGTTAATCAGGAGCAAGAGGATGTACCGATTATTggagtaatattttttatctcaCACG : 37866 187 : alIleTyrValMetLeuGlnLeuLeuLeuTyrCysTyrMetGlyGluLysLeu : 203 ||! !|||..!||||||...|||...:::|||||||||::!||||||! !||| alThrTyrThrMetLeuHisLeuPheIleTyrCysTyrValGlyGluThrLeu 37867 : TGACCTATACCATGTTAcatctatttatttattgctacgtGGGCGAAACACTT : 37919 vulgar: gi|815920792|ref|XP_012245313.1| 1 203 . KQ414804.1 35939 37919 + 244 M 15 45 G 0 12 M 60 180 S 0 1 5 0 2 I 0 677 3 0 2 S 1 2 M 54 162 S 0 2 5 0 2 I 0 542 3 0 2 S 1 1 M 33 99 5 0 2 I 0 131 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 35940 37919 244 + . gene_id 3 ; sequence gi|815920792|ref|XP_012245313.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 35940 36177 . + . KQ414804.1 exonerate:protein2genome:local exon 35940 36177 . + . insertions 12 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 36178 36179 . + . intron_id 1 ; splice_site "gt" KQ414804.1 exonerate:protein2genome:local intron 36178 36858 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 36857 36858 . + . intron_id 0 ; splice_site "CG" KQ414804.1 exonerate:protein2genome:local cds 36859 37024 . + . KQ414804.1 exonerate:protein2genome:local exon 36859 37024 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 37025 37026 . + . intron_id 2 ; splice_site "TC" KQ414804.1 exonerate:protein2genome:local intron 37025 37570 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 37569 37570 . + . intron_id 1 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 37571 37670 . + . KQ414804.1 exonerate:protein2genome:local exon 37571 37670 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 37671 37672 . + . intron_id 3 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 37671 37805 . + . intron_id 3 KQ414804.1 exonerate:protein2genome:local splice3 37804 37805 . + . intron_id 2 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 37806 37919 . + . KQ414804.1 exonerate:protein2genome:local exon 37806 37919 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 35940 37919 244 + . alignment_id 3 ; Query gi|815920792|ref|XP_012245313.1| ; Align 35940 2 45 ; Align 35997 17 180 ; Align 36861 78 162 ; Align 37572 133 99 ; Align 37806 166 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920792|ref|XP_012245313.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 206 -> 277 Target range: 39965 -> 40253 207 : SerThrGluIleAlaAsnThrAlaTyrAsnAlaGluTrpTyrAsnLeuProProLysAsn : 226 ||||||! !|||!.!.!.:!!||||||:!!..!.!.||||||:!!||||||||||||:!! SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 227 : AlaArgTrpLeuValIleIleMetCysArgAlaArgSerSerProLeuGlnIleThrAla : 246 ||| !! !|||||||||:!:!!:|||||||||!:! !||| !!!|||||||||||| AlaValSerLeuValIleValIleCysArgAlaGlnValSer---PheGlnIleThrAla 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCC---TTTCAAATAACCGCT : 40080 247 : GlyArgPheCysCysPheThrLeuValLeuTyrSerGln >>>> Target Intron : 260 |||!:!||| !! !|||:!!|||! !|||!:!!:! 78 bp GlyLysPheSerProPheSerLeuGluLeuPheAsnAla++ 40081 : GGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTgt................... : 40124 261 : 1 >>>> ValLeuLysThrSerMetGlyTyrValSerValLeuLeuAlaMetLysAsnL : 277 ||||||||||||||| ||||||:!!|||||||||||||||||||||:!!! ++ValLeuLysThrSerAlaGlyTyrLeuSerValLeuLeuAlaMetLysAspA 40125 : ......agGTTTTAAAAACGTCTGCTGGATATCTTTCCGTGTTGCTAGCTATGAAAGACA : 40251 278 : ys : 277 :! rg 40252 : GA : 40253 vulgar: gi|815920792|ref|XP_012245313.1| 206 277 . KQ414804.1 39965 40253 + 180 M 34 102 G 1 0 M 18 54 5 0 2 I 0 74 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40253 180 + . gene_id 4 ; sequence gi|815920792|ref|XP_012245313.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39966 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40121 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40253 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40253 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39966 40253 180 + . alignment_id 4 ; Query gi|815920792|ref|XP_012245313.1| ; Align 39966 207 102 ; Align 40068 242 54 ; Align 40200 260 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920792|ref|XP_012245313.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 179 Query range: 1 -> 114 Target range: 30821 -> 31539 2 : LeuLysPheMetGlyIleTrpProGlu<->GluArgLysTrpAsnArgProSerSerTyr : 20 :!!:!!.!.:!:||||||||||||||| ...|||... .!.||| ! !!!:!!:! MetGluLeuValGlyIleTrpProGluProSerArgSerAspGlnArgTrpProAsnPhe 30822 : ATGGAACTGGTTGGAATTTGGCCAGAACCGAGCAGATCTGATCAACGATGGCCGAATTTC : 30879 21 : PheValLeuLeuProCysIleValMetValCysPheIleCysAlaProGlnThrPheAsn : 40 !.!|||||| ! !.!!|||:::::: ||| !!.!||||||!:! ! ||| LysAlaLeuLeuPheIlePheValIleIlePhePheGlyThrGlyProGlnSerValAsn 30880 : AAGGCTTTGCTGTTCATTTTTGtgataatattttttggaaCCGGACCTCAGAGCGTGAAT : 30939 41 : LeuSerIleIleAlaGlyAspSerAspLeuValIleGluAsnLeuSerThr<->AsnIle : 59 ||| !.!!||| !|||||| !! ||||||! ||||||||||||||| |||||| LeuLeuPheIleTrpGlyAspLeuGlyLeuValThrGluAsnLeuSerThrAlaAsnIle 30940 : CTACTTTTCATATGGGGAGACCTTGGATTGGTCACGGAAAATCTGTCCACGGCTAATATT : 30999 60 : ThrIleThrIleSerLeuMetLysThrMetAlaValTrpMetLysGlyLys{P} >>>> : 77 !! !! !! !:!!:!!|||||| !!!: !!.!||| ! !! ! { } ProGlyIleAsnAlaMetMetLysLeuIleIleAlaTrpHisHisArgAsp{V}++ 31000 : CCCGGCATAAACGCCATGATGAAACTGATTATCGCCTGGCATCACAGAGAT{G}gt.... : 31056 78 : Target Intron 1 >>>> {ro}IleThrTyrThrThrValAspThrPheValVal : 88 373 bp { !}|||!:!|||||||||||||||||||||:!!!.! -+{al}IleSerTyrThrThrValAspThrPheIleAla 31057 : .....................tg{TT}ATCAGTTACACCACCGTGGATACATTTATCGCG : 31459 89 : LeuLeuIlePheHisValCysGlyGlnLeuSerIleLeuArgAspAspLeuArgLysIle : 108 :!!||||||.!.|||:!!|||||||||!!!..!|||||||||.!. ! ||||||!:!:!: MetLeuIleMetHisIleCysGlyGlnPheGluIleLeuArgGlnLysLeuArgArgLeu 31460 : ATGCTGATAATGCACATATGCGGACAATTTGAGATACTGAGACAGAAATTACGAAGGCTG : 31519 109 : HisSerCysAspAspLys : 114 ..! !!!: ! ||| MetAspAspGluLysLys 31520 : ATGGATGACGAGAAGAAG : 31539 vulgar: gi|815920792|ref|XP_012245313.1| 1 114 . KQ414804.1 30821 31539 + 179 M 9 27 G 0 3 M 47 141 G 0 3 M 19 57 S 0 1 5 0 2 I 0 369 3 0 2 S 1 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 30822 31539 179 + . gene_id 5 ; sequence gi|815920792|ref|XP_012245313.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 30822 31053 . + . KQ414804.1 exonerate:protein2genome:local exon 30822 31053 . + . insertions 6 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 31054 31055 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 31054 31426 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 31425 31426 . + . intron_id 0 ; splice_site "TG" KQ414804.1 exonerate:protein2genome:local cds 31427 31539 . + . KQ414804.1 exonerate:protein2genome:local exon 31427 31539 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 30822 31539 179 + . alignment_id 5 ; Query gi|815920792|ref|XP_012245313.1| ; Align 30822 2 27 ; Align 30852 11 141 ; Align 30996 58 57 ; Align 31429 78 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920796|ref|XP_012245315.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 754 Query range: 1 -> 252 Target range: 43191 -> 45144 2 : GlyLysAsnAlaSerMetAspIleGlnArg{A} >>>> Target Intron 1 >>>> : 12 ||||||.!.||||||||||||:!!|||! {|} 883 bp GlyLysGluAlaSerMetAspValGlnPro{A}++ 43192 : GGAAAAGAGGCCTCGATGGATGTTCAACCa{g}gt......................... : 43225 13 : {sp}ValArgTyrMetTyrGlyTrpAsnTyrTyrMetLeuArgPheMetGlyIleTrp : 30 {||}:!!!:!|||:!!||||||||||||:!!|||! :!!|||||||||||||||||| ++{sp}LeuLysTyrValTyrGlyTrpAsnHisTyrThrMetArgPheMetGlyIleTrp 43226 : ag{AT}TTGAAGTATGTGTACGGTTGGAACCATTACACCATGAGGTTCATGGGAATCTGG : 44159 31 : ProGluGluArgLysTrpTyrArgAlaTyrSerTyrLeuValLeuLeuProCysIleMet : 50 |||||||||||||||||| !!:! !!! |||||||||!.!|||:!!||| !:!!||| ProGluGluArgLysTrpAsnGlnProSerSerTyrLeuAlaLeuIleProValLeuMet 44160 : CCagaggaaagaaaatggaaCCAACCATCGAGTTACCTAGCTCTAATACCAGTTCTCATG : 44219 51 : MetLeuCysPheValCysAlaProGlnThrIleAsnLeuThrMetIleAlaSerAspSer : 70 |||!!! !|||||||||!.!||||||||||||||||||:!!.!.||| !.!!|||! ! MetPheLeuPheValCysValProGlnThrIleAsnLeuSerPheIleTrpGlyAspPhe 44220 : ATGTTTCTCTTCGTTTGTGTCCCACAAACGATCAATCTTTCATTCATCTGGGGTGATTTT : 44279 71 : AspLeuValIleGluAsnLeuSerThr<->AsnIleThrIleThrLeuSerLeuMetLys : 89 :!!||||||:!!||||||||||||! ! |||||||||||||||:!!||||||:!!||| AsnLeuValValGluAsnLeuSerMetGlyAsnIleThrIleThrIleSerLeuLeuLys 44280 : AATTTAGTGGTAGAGAATCTATCCATGGGTAACATAACAATCACTATTTCCCTTCTGAAG : 44339 90 : ThrIleValIleTrpPheArgGlyLys{S} >>>> Target Intron 2 >>>> { : 99 ||||||!.!.!!|||.!!!.!||||||{ } 314 bp { ThrIleAlaPheTrpIleAsnGlyLys{P}++ ++{ 44340 : ACCATCGCTTTTTGGATCAACGGCAAA{C}gt.........................ag{ : 44684 100 : er}LeuArgProLeuIleLysCysMetValAsnAspTrpAspThrValMetAsnGluThr : 118 !!}|||!:! !!|||:!:|||||||||!.!:!!||||||..!|||||| !!!.:!! ! ro}LeuLysSerLeuLeuLysCysMetAlaAspAspTrpSerThrValSerLysLysAsp 44685 : CA}CTGAAATCTCTGCTGAAATGCATGGCCGACGATTGGAGCACAGTATCGAAAAAAGAT : 44740 119 : GluArgGluThrMetValAsnIleAlaIleIleThrArgLysThrThrMetArgSerThr : 138 !!:! !!!:|||||| !|||||||||! |||||||||||||||! !!!:!!!|||||| AspLeuAspThrMetSerAsnIleAlaArgIleThrArgLysThrIleIleSerSerThr 44741 : GATCTAGACACCATGAGTAACATCGCAAGGATCACCAGAAAGACTATAATAAGCAGCACA : 44800 139 : LeuMetValAsnIleValValLeuAlaPheLeuProAlaArgLeuSerAsnMetArgTyr : 158 :!!:!: !:!!|||||||||:!!.!!!:!:!! ! !|||!!! !!.!! !!:!||| ValLeuCysHisIleValValIleThrTyrIlePheLeuArgPheLeuThrArgLysTyr 44801 : GTGTTATGTCACATTGTGGTCATCACTTATATATTTCTACGATTCCTCACCAGGAAGTAC : 44860 159 : AsnAspSerAlaLeuPhePheArgGlyTyrPheProTyrAsnThrSerIleSerProAsn : 178 !:!! !!!! !|||.!!||||||!.!||||||||||||:!!!:!..!:!!||||||||| SerGlyThrArgLeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsn 44861 : AGCGGCACCAGACTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAAT : 44920 179 : PheGluLeuThrMetIleGlyGlnPheValAlaThrValTyrAlaAlaAsnThrTyrThr : 198 !:!|||!!!|||:!!|||!.!|||.!!:!!|||.!! !!|||||||||!.!||||||||| TyrGluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThr 44921 : TACGAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACA : 44980 199 : AlaIleAspThrPheValValLeuLeuIlePheHisValCysGlyGlnLeuSerAsnLeu : 218 |||:!!|||||||||:!!|||:!!||||||.!.||||||||||||||||||||||||||| AlaValAspThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeu 44981 : GCCGTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTG : 45040 219 : ArgAspAspLeuGlnLysIleHisSerTyrAspLysLysAspValGluThrLysLeuArg : 238 |||:!!!!:!!! |||:!!!!.:!!! !|||||| ! :!!:!!.!!|||||| !! ArgAsnGluPheGlyLysLeuGlnAlaCysAspLysValThrLeuGlnAlaLysLeuGly 45041 : AGAAACGAATTCGGTAAGCTTCAAGCATGCGATAAAGTAACATTACAGGCGAAGTTGGGG : 45100 239 : LysIleIleGlnLysHisGluTyrIleAsnArgPheAlaThr : 252 ||||||:!:|||||||||||||||:!!|||||||||!.!:!! LysIleValGlnLysHisGluTyrLeuAsnArgPheValSer 45101 : AAAATCGTGCAGAAACACGAATATCTTAACAGGTTCGTATCA : 45144 vulgar: gi|815920796|ref|XP_012245315.1| 1 252 . KQ414804.1 43191 45144 + 754 M 10 30 S 0 1 5 0 2 I 0 879 3 0 2 S 1 2 M 67 201 G 0 3 M 19 57 S 0 1 5 0 2 I 0 310 3 0 2 S 1 2 M 153 459 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 43192 45144 754 + . gene_id 1 ; sequence gi|815920796|ref|XP_012245315.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 43192 43222 . + . KQ414804.1 exonerate:protein2genome:local exon 43192 43222 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 43223 43224 . + . intron_id 1 ; splice_site "gt" KQ414804.1 exonerate:protein2genome:local intron 43223 44105 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 44104 44105 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 44106 44369 . + . KQ414804.1 exonerate:protein2genome:local exon 44106 44369 . + . insertions 3 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 44370 44371 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 44370 44683 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 44682 44683 . + . intron_id 1 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 44684 45144 . + . KQ414804.1 exonerate:protein2genome:local exon 44684 45144 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 43192 45144 754 + . alignment_id 1 ; Query gi|815920796|ref|XP_012245315.1| ; Align 43192 2 30 ; Align 44108 13 201 ; Align 44312 80 57 ; Align 44686 100 459 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920796|ref|XP_012245315.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 433 Query range: 248 -> 378 Target range: 51506 -> 52053 249 : ArgPheAlaThrThrIleGluAsnSerPheAsnMetMetLeuLeuLeuGlnMetLeuGly : 268 ||||||||| !|||||||||..!!!!||||||||||||||||||:!!|||||||||||| ArgPheAlaGluThrIleGluArgCysPheAsnMetMetLeuLeuIleGlnMetLeuGly 51507 : AGGTTCGCAGAAACGATAGAGCGTTGTTTCAATATGATGCTTCTGATTCAGATGCTCGGT : 51564 269 : CysThrIleGlnIleCysSerGlnSerTyrGlnIleIleMet >>>> Target Intr : 283 ||||||:!!|||:!!|||! !|||!!!!:!||| !:!!||| 100 bp CysThrValGlnLeuCysPheGlnCysPheGlnAlaValMet++ 51565 : TGTACCGTTCAGCTATGCTTCCAGTGTTTCCAAGCAGTCATGgt................ : 51611 284 : on 1 >>>> SerPheGluGluGluAlaMetGluTyrMetIlePheGlnIleThrPheL : 299 |||.!!!!:|||||| ! ||| !!||||||||||||||| |||| ++SerIleAspGluGluIleAspGluAsnMetIlePheGlnIleLeuPheL 51612 : .........agTCAATTGACGAGGAAATAGATGAAAACAtgattttccaaattctctTTT : 51757 300 : euLeuLeuTyrValValTyrValMetLeuGlnLeuPheLeuTyrCysTyrMetGlyGluL : 319 |||||!!!||||||||||||||||||||||||||||||||||||||||||:!!||||||! euLeuPheTyrValValTyrValMetLeuGlnLeuPheLeuTyrCysTyrValGlyGluA 51758 : TGCTGTTCTACGTGGTTTACGTGATGCTACAATTATTCTTGTATTGTTACGTGGGTGAAA : 51817 320 : ysLeuAlaAlaGlu >>>> Target Intron 2 >>>> SerThrGluIleAlaAs : 329 :!|||:!!!.!||| 60 bp |||..!||||||||||| rgLeuSerValGlu++ ++SerValGluIleAlaAs 51818 : GGCTTTCCGTTGAGgt.........................agAGCGTTGAAATAGCTAA : 51907 330 : nThrAlaTyrTyrAlaGluTrpTyrAsnLeuProProLysSerAlaArgTrpLeuValIl : 349 |.!!|||||| !!:!!||||||||||||||| !!||||||!:!|||!:!! !|||:!!|| nAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLysAsnAlaLysLeuLeuLeuIl 51908 : CGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTGCTACTAAT : 51967 350 : eIleMetCysArgAlaArgSerSerProLeuGlnIleThrAlaGlyArgPheTyrTrpPh : 369 ||||||| ! ||||||||| ! !||||||||||||||||||||||||||| ! || eIleMetArgArgAlaArg---LeuProLeuGlnIleThrAlaGlyArgPheAlaThrPh 51968 : TATCATGCGACGAGCCAGG---TTACCTCTACAAATCACTGCAGGTAGATTTGCTACTTT : 52024 370 : eThrLeuAlaLeuTyrThrGlnValSer : 378 ||||||| !||||||:!!||||||||| eThrLeuMetLeuTyrSerGlnValSer 52025 : CACTCTGATGCTGTATTCACAGGTaagt : 52053 vulgar: gi|815920796|ref|XP_012245315.1| 248 378 . KQ414804.1 51506 52053 + 433 M 34 102 5 0 2 I 0 96 3 0 2 M 41 123 5 0 2 I 0 56 3 0 2 M 32 96 G 1 0 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51507 52053 433 + . gene_id 2 ; sequence gi|815920796|ref|XP_012245315.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51507 51608 . + . KQ414804.1 exonerate:protein2genome:local exon 51507 51608 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51609 51610 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51609 51708 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51707 51708 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 51709 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51709 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 1 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52053 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52053 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 51507 52053 433 + . alignment_id 2 ; Query gi|815920796|ref|XP_012245315.1| ; Align 51507 249 102 ; Align 51709 283 123 ; Align 51892 324 96 ; Align 51988 357 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920796|ref|XP_012245315.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 321 Query range: 11 -> 239 Target range: 35903 -> 36995 12 : AspValArgTyrMetTyrGlyTrpAsnTyrTyrMetLeuArgPheMetGlyIleTrpPro : 31 !!::!! !!:! ||||||||| !!:!! ||| ! ! :!:|||:!:|||||| GluMetAspPheAlaMetGlyTrpAsnArgPheSerLeuSerValLeuGlyValTrpPro 35904 : GAAATGGATTTTGCTATGGGATGGAATCGTTTCAGTTTATCTGTACTTGGCGTGTGGCCA : 35961 32 : GluGluArgLysTrpTyrArg<-><-><-><->AlaTyrSerTyrLeuValLeuLeuPro : 47 ||| !|||||| !! !!.! |||! !!:!!:!:!! !!! !!!! !! GluProArgLysMetSerAsnLeuSerArgPheAlaSerAsnPheIlePheTrpPheThr 35962 : GAACCGAGAAAGATGTCTAACCTGTCACGATTCGCGTCTAACTTTATATTCTGGTTCACG : 36021 48 : CysIleMetMetLeuCysPheValCysAlaProGlnThrIleAsnLeuThrMetIleAla : 67 !:!:!!:! !:!! !|||:!!||||||||||||! !! :!!|||..!::: ::: ThrLeuIleThrValValPheIleCysAlaProGlnMetThrHisLeuValLeuLysSer 36022 : ACTTTGATAACGGTTGTCTTCATATGCGCTCCCCAAATGACGCATTTGGTAttaaaatcg : 36081 68 : SerAspSerAspLeuValIleGluAsnLeuSerThrAsnIleThrIleThrLeuSerLeu : 87 :::::: ||| !||||||||||||||||||..!|||||| !!!!: !!!!|||||| ThrAsnLeuAspGluValIleGluAsnLeuSerValAsnIleProMetLeuPheSerLeu 36082 : acgaatttgGACGAGGTGATAGAGAATCTGTCGGTCAACATACCGATGCTCTTCTCATTG : 36141 88 : MetLysThrIleValIleTrpPheArgGlyLys{S} >>>> Target Intron 1 > : 99 ||| !|||:!!:!: ! !:!||| !!|||{:} 381 bp GlyLysGlnIleIleLeuArgTyrArgArgLys{A}++ 36142 : GGCAAGCAAATCATTCTGCGTTATCGTAGAAAA{G}gt...................... : 36180 100 : >>> {er}LeuArgProLeuIleLysCysMetValAsnAspTrpAspThrValMetAsn : 116 {!!}||| ! !|||!!:!.. !!: !!:!!||||||! ! !!!: ++{la}LeuValPheLeuMetSerGlnIlePheAspAspTrpAlaGluProIlePro 36181 : ...ag{CG}CTAGTATTCTTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCG : 36609 117 : GluThrGluArgGluThrMetValAsnIleAlaIleIleThrArgLysThrThrMetArg : 136 |||..!!!:|||.!.||||||:!!!!.! !|||! !|||!:!|||! !! !:!!!!: ! GluValAspArgHisThrMetLeuLysThrAlaLysIleSerArgMetIleSerIleVal 36610 : GAGGTGGATCGCCACACGATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTC : 36669 137 : SerThrLeuMetValAsnIleValValLeuAlaPheLeuProAlaArgLeu<->SerAsn : 155 !!!:!!:!!:!!..! !!:!!:!!||||||||||||||| !! !!:!:!! |||!:! CysSerIleLeuThrTyrValMetValLeuAlaPheLeuSerLeuGlnIleTrpSerSer 36670 : TGTTCTATCCTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGCAGC : 36729 156 : MetArg<-><-><-><->TyrAsnAspSerAlaLeuPhePheArgGlyTyrPheProTyr : 171 |||!:! !:!|||! .!!!.!|||.!!.!!! !!.! ||||||||| MetGlnAsnThrSerGluPheAsnValGlyGlyLeuLeuIleProAlaThrPheProTyr 36730 : ATGCAAAACACCTCGGAGTTCAACGTAGGAGGACTACTTATCCCGGCCACATTTCCATAC : 36789 172 : AsnThrSerIleSerProAsnPheGluLeuThrMetIleGlyGlnPheValAlaThrVal : 191 :!!|||!:!! !|||||||||!:!|||:!!||| !:!!||||||||||||!.!|||||| AspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrVal 36790 : GACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTG : 36849 192 : TyrAlaAlaAsnThrTyrThrAlaIleAspThrPheValValLeuLeuIlePheHisVal : 211 ! ::!|||! !|||:!!..!.!!||||||||||||!.!:!!|||:!:!!.|||:!! LeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHisIle 36850 : TTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATA : 36909 212 : CysGlyGlnLeuSerAsnLeuArgAspAspLeuGlnLysIleHisSerTyrAspLysLys : 231 ||||||||||||!!! !|||||| !! !|||:!!!!.:!! !!:! ! !||| CysGlyGlnLeuThrValLeuArgIleAlaLeuGluAsnLeuAlaAsnThrThrIleLys 36910 : TGCGGCCAATTAACTGTTCTCCGCATTGCCCTCGAGAATCTTGCTAACACGACAATAAAA : 36969 232 : AspValGluThrLysLeuArgLys : 239 ||| ! ! !:!|||!!!!:!:!! AspAsnTyrSerLysPheGlnGlu 36970 : GACAACTACAGCAAGTTCCAAGAA : 36995 vulgar: gi|815920796|ref|XP_012245315.1| 11 239 . KQ414804.1 35903 36995 + 321 M 27 81 G 0 12 M 60 180 S 0 1 5 0 2 I 0 377 3 0 2 S 1 2 M 54 162 G 0 3 M 4 12 G 0 12 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 35904 36995 321 + . gene_id 3 ; sequence gi|815920796|ref|XP_012245315.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 35904 36177 . + . KQ414804.1 exonerate:protein2genome:local exon 35904 36177 . + . insertions 12 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 36178 36179 . + . intron_id 1 ; splice_site "gt" KQ414804.1 exonerate:protein2genome:local intron 36178 36558 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 36557 36558 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 36559 36995 . + . KQ414804.1 exonerate:protein2genome:local exon 36559 36995 . + . insertions 15 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 35904 36995 321 + . alignment_id 3 ; Query gi|815920796|ref|XP_012245315.1| ; Align 35904 12 81 ; Align 35997 39 180 ; Align 36561 100 162 ; Align 36726 154 12 ; Align 36750 158 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920796|ref|XP_012245315.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 248 -> 325 Target range: 33631 -> 33936 249 : ArgPheAlaThrThrIleGluAsnSerPheAsnMetMetLeuLeuLeuGlnMetLeuGly : 268 ||||||||||||! !||||||:!!!!!||||||! :!!||||||:!!||||||||| ! ArgPheAlaThrMetIleGluAspCysPheAsnThrLeuLeuLeuIleGlnMetLeuLeu 33632 : aGGTTCGCAACTATGATCGAGGATTGTTTCAACACATTGCTATTAATTCAGATGCTGCTC : 33689 269 : CysThrIleGlnIleCysSerGlnSerTyrGlnIleIleMet >>>> Target Intr : 283 ||||||:!!:!!||||||! !|||.!!!:! !.!!.!! 74 bp CysThrValGluIleCysPheGlnGlyPheLeuPhePheAsp++ 33690 : TGTACCGTCGAAATATGCTTTCAAGGCTTTTTATTCTTCGATgt................ : 33736 284 : on 1 >>>> SerPheGluGluGluAlaMetGluTyrMetIlePheGlnIleThrPheL : 299 !.!. !|||.!.! !! ! ! .!.! ! ! |||:!: !|||! ++ValIleLeuGluAsnGluLysGlyIlePheAsnValGlnLeuLeuPheP 33737 : .........agGTGATACTAGAAAACGAGAAAGGAATATTCAACGTGCAATTGCTTTTCT : 33856 300 : euLeuLeuTyrValValTyrValMetLeuGlnLeuPheLeuTyrCysTyrMetGlyGluL : 319 !!:!!|||!:!||| !!:!:!!:!::!!!!.:!!!:!:!!|||||||||!!:||||||! heValLeuPheValCysPheIleLeuValHisIleTyrIleTyrCysTyrIleGlyGluM 33857 : TCGTGCTGTTCGTATGCTTCATCCTTGTACACATCTACATTTATTGTTACATAGGAGAGA : 33916 320 : ysLeuAlaAlaGluSerThr : 325 !||| !.!!.!.:!!!:! etLeuLeuThrHisAlaSer 33917 : TGCTACTCACACATGCAAGT : 33936 vulgar: gi|815920796|ref|XP_012245315.1| 248 325 . KQ414804.1 33631 33936 + 151 M 34 102 5 0 2 I 0 70 3 0 2 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33632 33936 151 + . gene_id 4 ; sequence gi|815920796|ref|XP_012245315.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33632 33733 . + . KQ414804.1 exonerate:protein2genome:local exon 33632 33733 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33734 33735 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 33734 33807 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 33806 33807 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 33808 33936 . + . KQ414804.1 exonerate:protein2genome:local exon 33808 33936 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33632 33936 151 + . alignment_id 4 ; Query gi|815920796|ref|XP_012245315.1| ; Align 33632 249 102 ; Align 33808 283 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920796|ref|XP_012245315.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 245 -> 323 Target range: 37559 -> 37928 246 : TyrIleAsnArgPheAlaThrThrIleGluAsnSerPheAsnMetMetLeuLeuLeuGln : 265 :::......|||::!|||..!! !:!:|||:!!!!!||||||!!:|||||||||:!!||| PhePheLysArgTyrAlaValIleValGluAspCysPheAsnIleMetLeuLeuValGln 37560 : ttttttaaaaggtaCGCTGTGATAGTGGAAGATTGCTTCAACATCATGCTGCTCGTTCAA : 37617 266 : MetLeuGlyCysThrIleGlnIleCysSerGlnSerTyrGlnIle >>>> Target I : 281 ! ||| !|||||| !..!:!!|||! ! .!!|||!::!!: 135 ThrLeuMetCysThrAlaMetLeuCysMetThrGlyTyrArgMet-+ 37618 : ACTTTAATGTGCACCGCCATGCTCTGTATGACTGGATATCGCATGat............. : 37667 282 : ntron 1 >>>> IleMetSerPheGluGluGluAlaMetGluTyrMetIlePheGlnI : 296 bp :!! !||| !!.!.:!!||| ! !!!: !|||.!! : --Leu***SerValAsnGlnGluGlnGluAspValProIleIleGlyV 37668 : ............taTTATAGTCTGTTAATCAGGAGCAAGAGGATGTACCGATTATTggag : 37845 297 : leThrPheLeuLeuLeuTyrValValTyrValMetLeuGlnLeuPheLeuTyrCysTyrM : 316 :: |||...::: :!!|||..!|||..!||||||...||||||:::|||||||||: alIlePhePheIleSerHisValThrTyrThrMetLeuHisLeuPheIleTyrCysTyrV 37846 : taatattttttatctcaCACGTGACCTATACCATGTTAcatctatttatttattgctacg : 37905 317 : etGlyGluLysLeuAlaAlaGlu : 323 :!||||||! !||| !!.!:!! alGlyGluThrLeuLeuGlyGln 37906 : tGGGCGAAACACTTCTTGGACAA : 37928 vulgar: gi|815920796|ref|XP_012245315.1| 245 323 . KQ414804.1 37559 37928 + 129 M 35 105 5 0 2 I 0 131 3 0 2 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 37560 37928 129 + . gene_id 5 ; sequence gi|815920796|ref|XP_012245315.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 37560 37664 . + . KQ414804.1 exonerate:protein2genome:local exon 37560 37664 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 37665 37666 . + . intron_id 1 ; splice_site "AT" KQ414804.1 exonerate:protein2genome:local intron 37665 37799 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 37798 37799 . + . intron_id 0 ; splice_site "TA" KQ414804.1 exonerate:protein2genome:local cds 37800 37928 . + . KQ414804.1 exonerate:protein2genome:local exon 37800 37928 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 37560 37928 129 + . alignment_id 5 ; Query gi|815920796|ref|XP_012245315.1| ; Align 37560 246 105 ; Align 37800 281 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920796|ref|XP_012245315.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 323 -> 378 Target range: 39965 -> 40127 324 : SerThrGluIleAlaAsnThrAlaTyrTyrAlaGluTrpTyrAsnLeuProProLysSer : 343 ||||||! !|||!.!.!.:!!|||||| !!..!.!.||||||:!!|||||||||||| ! SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 344 : AlaArgTrpLeuValIleIleMetCysArgAlaArgSerSerProLeuGlnIleThrAla : 363 ||| !! !|||||||||:!:!!:|||||||||!:! !||| !!!|||||||||||| AlaValSerLeuValIleValIleCysArgAlaGlnValSer---PheGlnIleThrAla 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCC---TTTCAAATAACCGCT : 40080 364 : GlyArgPheTyrTrpPheThrLeuAlaLeuTyrThrGlnValSer : 378 |||!:!||| ! |||:!!|||! !|||!:!!.! |||||| GlyLysPheSerProPheSerLeuGluLeuPheAsnAlaValSer 40081 : GGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTGTGAGT : 40127 vulgar: gi|815920796|ref|XP_012245315.1| 323 378 . KQ414804.1 39965 40127 + 128 M 34 102 G 1 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40127 128 + . gene_id 6 ; sequence gi|815920796|ref|XP_012245315.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39966 40127 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40127 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 39966 40127 128 + . alignment_id 6 ; Query gi|815920796|ref|XP_012245315.1| ; Align 39966 324 102 ; Align 40068 359 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920796|ref|XP_012245315.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 8 -> 94 Target range: 30776 -> 31040 9 : IleGlnArgAspValArgTyrMetTyrGlyTrpAsnTyrTyrMetLeuArgPheMetGly : 28 ||| !! !:!!!:! !||||||||| !!::! :!!..!.!.:!:||| IleThrSerGlyLeuLysValAlaLeuGlyTrpAsnArgTrpAsnMetGluLeuValGly 30777 : ATTACTTCAGGTTTGAAGGTAGCACTTGGATGGAACCGTTGGAACATGGAACTGGTTGGA : 30834 29 : IleTrpProGlu<->GluArgLysTrpTyrArgAlaTyrSerTyrLeuValLeuLeuPro : 47 |||||||||||| ...|||... ! ||| ! !:!!:! !!.!|||||| ! IleTrpProGluProSerArgSerAspGlnArgTrpProAsnPheLysAlaLeuLeuPhe 30835 : ATTTGGCCAGAACCGAGCAGATCTGATCAACGATGGCCGAATTTCAAGGCTTTGCTGTTC : 30894 48 : CysIleMetMetLeuCysPheValCysAlaProGlnThrIleAsnLeuThrMetIleAla : 67 !.!!::::::::: ||| !!.!||||||!:!:!:|||||| !.!.||| ! IlePheValIleIlePhePheGlyThrGlyProGlnSerValAsnLeuLeuPheIleTrp 30895 : ATTTTTGtgataatattttttggaaCCGGACCTCAGAGCGTGAATCTACTTTTCATATGG : 30954 68 : SerAspSerAspLeuValIleGluAsnLeuSerThr<->AsnIleThrIleThrLeuSer : 86 .!!||| !! ||||||! ||||||||||||||| |||||| !! !! ! !:!! GlyAspLeuGlyLeuValThrGluAsnLeuSerThrAlaAsnIleProGlyIleAsnAla 30955 : GGAGACCTTGGATTGGTCACGGAAAATCTGTCCACGGCTAATATTCCCGGCATAAACGCC : 31014 87 : LeuMetLysThrIleValIleTrp : 94 :!!|||||| !|||:!! !||| MetMetLysLeuIleIleAlaTrp 31015 : ATGATGAAACTGATTATCGCCTGG : 31040 vulgar: gi|815920796|ref|XP_012245315.1| 8 94 . KQ414804.1 30776 31040 + 120 M 24 72 G 0 3 M 47 141 G 0 3 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 30777 31040 120 + . gene_id 7 ; sequence gi|815920796|ref|XP_012245315.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 30777 31040 . + . KQ414804.1 exonerate:protein2genome:local exon 30777 31040 . + . insertions 6 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 30777 31040 120 + . alignment_id 7 ; Query gi|815920796|ref|XP_012245315.1| ; Align 30777 9 72 ; Align 30852 33 141 ; Align 30996 80 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920798|ref|XP_012245316.1| PREDICTED: odorant receptor 67c-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 543 Query range: 0 -> 201 Target range: 44221 -> 45141 1 : MetLeuCysPheAlaCysAlaProGlnThrIleAsnLeuProMetIleAlaGlyAspSer : 20 |||!!! !|||!.!|||!.!|||||||||||||||||| !!.!.||| !||||||! ! MetPheLeuPheValCysValProGlnThrIleAsnLeuSerPheIleTrpGlyAspPhe 44222 : ATGTTTCTCTTCGTTTGTGTCCCACAAACGATCAATCTTTCATTCATCTGGGGTGATTTT : 44279 21 : AspLeuValIleGluAsnLeuSerThr<->AsnIleThrValMetValSerLeuMetLys : 39 :!!||||||:!!||||||||||||! ! |||||||||:!!! :!!||||||:!!||| AsnLeuValValGluAsnLeuSerMetGlyAsnIleThrIleThrIleSerLeuLeuLys 44280 : AATTTAGTGGTAGAGAATCTATCCATGGGTAACATAACAATCACTATTTCCCTTCTGAAG : 44339 40 : ThrLeuThrValTrpIleAsnGlyIle{P} >>>> Target Intron 1 >>>> { : 49 |||:!!.!! !!||||||||||||! !{|} 314 bp { ThrIleAlaPheTrpIleAsnGlyLys{P}++ ++{ 44340 : ACCATCGCTTTTTGGATCAACGGCAAA{C}gt.........................ag{ : 44684 50 : ro}LeuLysSerLeuLeuArgTyrMetAlaAsnAspTrpAspAlaValThrThrAsnIle : 68 ||}|||||||||||||||!:!! !||||||:!!||||||..!.!!|||:!!! !!!. ! ro}LeuLysSerLeuLeuLysCysMetAlaAspAspTrpSerThrValSerLysLysAsp 44685 : CA}CTGAAATCTCTGCTGAAATGCATGGCCGACGATTGGAGCACAGTATCGAAAAAAGAT : 44740 69 : GluArgGluThrMetValAsnThrAlaArgIleThrArgLysIleThrIleGlySerThr : 88 !!:! !!!:|||||| !|||! !||||||||||||||||||! !! !|||.!!|||||| AspLeuAspThrMetSerAsnIleAlaArgIleThrArgLysThrIleIleSerSerThr 44741 : GATCTAGACACCATGAGTAACATCGCAAGGATCACCAGAAAGACTATAATAAGCAGCACA : 44800 89 : LeuMetValAsnIleValIleLeuAlaPheValProAlaArgLeuSerSerMetLysAsn : 108 :!!:!: !:!!||||||:!!:!!.!!!:!:!! ! !|||!!! !!!!! !||| !! ValLeuCysHisIleValValIleThrTyrIlePheLeuArgPheLeuThrArgLysTyr 44801 : GTGTTATGTCACATTGTGGTCATCACTTATATATTTCTACGATTCCTCACCAGGAAGTAC : 44860 109 : AsnAspIleThrLeuPheLeuArgGlyTyrPheProTyrAsnThrSerIleSerProAsn : 128 !:!! !! !! !|||.!!!!!|||!.!||||||||||||:!!!:!..!:!!||||||||| SerGlyThrArgLeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsn 44861 : AGCGGCACCAGACTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAAT : 44920 129 : PheGluLeuThrMetIleGlyGlnTyrValAlaAlaIleTyrAlaAlaAsnThrTyrThr : 148 !:!|||!!!|||:!!|||!.!||| !:!!||||||.!!|||||||||!.!||||||||| TyrGluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThr 44921 : TACGAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACA : 44980 149 : ThrValAspThrLeuValValLeuLeuIlePheHisValCysGlyGlnLeuSerIleLeu : 168 .!!|||||||||!!!:!!|||:!!||||||.!.|||||||||||||||||||||! !||| AlaValAspThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeu 44981 : GCCGTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTG : 45040 169 : ArgGlnAspLeuGlyArgIleAspSerTyrAspLysLysAsnIleGluMetLysMetGln : 188 |||.!.!!:!!!|||!:!:!!.!.:!!! !|||||| !!..:!!:!! !|||:!! ! ArgAsnGluPheGlyLysLeuGlnAlaCysAspLysValThrLeuGlnAlaLysLeuGly 45041 : AGAAACGAATTCGGTAAGCTTCAAGCATGCGATAAAGTAACATTACAGGCGAAGTTGGGG : 45100 189 : LysIleValGluLysHisGluTyrIleAsnArgPheVal : 201 |||||||||:!!||||||||||||:!!|||||||||||| LysIleValGlnLysHisGluTyrLeuAsnArgPheVal 45101 : AAAATCGTGCAGAAACACGAATATCTTAACAGGTTCGTA : 45141 vulgar: gi|815920798|ref|XP_012245316.1| 0 201 . KQ414804.1 44221 45141 + 543 M 29 87 G 0 3 M 19 57 S 0 1 5 0 2 I 0 310 3 0 2 S 1 2 M 152 456 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44222 45141 543 + . gene_id 1 ; sequence gi|815920798|ref|XP_012245316.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 44222 44369 . + . KQ414804.1 exonerate:protein2genome:local exon 44222 44369 . + . insertions 3 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 44370 44371 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 44370 44683 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 44682 44683 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 44684 45141 . + . KQ414804.1 exonerate:protein2genome:local exon 44684 45141 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44222 45141 543 + . alignment_id 1 ; Query gi|815920798|ref|XP_012245316.1| ; Align 44222 1 87 ; Align 44312 30 57 ; Align 44686 50 456 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920798|ref|XP_012245316.1| PREDICTED: odorant receptor 67c-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 403 Query range: 221 -> 355 Target range: 51503 -> 52062 222 : LeuGluPheAlaGlyArgIleGluAsnSerPheAsnMetMetLeuLeuPheGlnMetLeu : 241 |||..!||||||! !! !||||||..!!!!||||||||||||||||||.!!||||||||| LeuArgPheAlaGluThrIleGluArgCysPheAsnMetMetLeuLeuIleGlnMetLeu 51504 : CTAAGGTTCGCAGAAACGATAGAGCGTTGTTTCAATATGATGCTTCTGATTCAGATGCTC : 51561 242 : SerCysThrIleGlnIleCysSerGlnPheTyrGlnValMetMet >>>> Target I : 257 .!!||||||:!!|||:!!|||! !|||! !!:!|||!.!:!:||| 100 GlyCysThrValGlnLeuCysPheGlnCysPheGlnAlaValMet++ 51562 : GGTTGTACCGTTCAGCTATGCTTCCAGTGTTTCCAAGCAGTCATGgt............. : 51611 258 : ntron 1 >>>> SerLeuGlyGluAsnThrValGluAspMetIlePheGlnIleSerP : 272 bp |||:!!! !|||.!.! !! !|||:!!||||||||||||||| | ++SerIleAspGluGluIleAspGluAsnMetIlePheGlnIleLeuP 51612 : ............agTCAATTGACGAGGAAATAGATGAAAACAtgattttccaaattctct : 51754 273 : heLeuLeuIleTyrValPheTyrValMetLeuGlnLeuPheLeuTyrCysTyrMetGlyG : 292 ||||||||.!!|||||| !!|||||||||||||||||||||||||||||||||:!!|||| heLeuLeuPheTyrValValTyrValMetLeuGlnLeuPheLeuTyrCysTyrValGlyG 51755 : TTTTGCTGTTCTACGTGGTTTACGTGATGCTACAATTATTCTTGTATTGTTACGTGGGTG : 51814 293 : luLysLeuAlaAlaGlu >>>> Target Intron 2 >>>> SerThrGluIleAl : 302 ||!:!|||:!!!.!||| 60 bp |||..!|||||||| luArgLeuSerValGlu++ ++SerValGluIleAl 51815 : AAAGGCTTTCCGTTGAGgt.........................agAGCGTTGAAATAGC : 51904 303 : aAsnIleAlaTyrSerThrLysTrpTyrAsnLeuSerProLysAsnAlaArgTrpLeuVa : 322 |||| ||||||..!:!!:!!|||||||||||||||||||||||||||!:!! !|||:! aAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLysAsnAlaLysLeuLeuLe 51905 : TAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTGCTACT : 51964 323 : lIleIleMetCysArgAlaThrSerSerProLeuGlnIleThrAlaGlyArgPheCysSe : 342 !||||||||| ! |||||| !!!! !|||||||||||||||||||||||||||..!!! uIleIleMetArgArgAla---ArgLeuProLeuGlnIleThrAlaGlyArgPheAlaTh 51965 : AATTATCATGCGACGAGCC---AGGTTACCTCTACAAATCACTGCAGGTAGATTTGCTAC : 52021 343 : rPheThrPheAlaLeuTyrCysGlnThrAlaAlaCysLeu : 355 !||||||.!. !||||||! |||...:::... ||| rPheThrLeuMetLeuTyrSerGlnValSerThrIleLeu 52022 : TTTCACTCTGATGCTGTATTCACAGGTaagtacaatttta : 52062 vulgar: gi|815920798|ref|XP_012245316.1| 221 355 . KQ414804.1 51503 52062 + 403 M 35 105 5 0 2 I 0 96 3 0 2 M 41 123 5 0 2 I 0 56 3 0 2 M 31 93 G 1 0 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51504 52062 403 + . gene_id 2 ; sequence gi|815920798|ref|XP_012245316.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51504 51608 . + . KQ414804.1 exonerate:protein2genome:local exon 51504 51608 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51609 51610 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51609 51708 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51707 51708 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 51709 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51709 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 1 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52062 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52062 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 51504 52062 403 + . alignment_id 2 ; Query gi|815920798|ref|XP_012245316.1| ; Align 51504 222 105 ; Align 51709 257 123 ; Align 51892 298 93 ; Align 51985 330 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920798|ref|XP_012245316.1| PREDICTED: odorant receptor 67c-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 258 Query range: 1 -> 189 Target range: 36035 -> 36995 2 : LeuCysPheAlaCysAlaProGlnThrIleAsnLeuProMetIleAlaGlyAspSerAsp : 21 :!! !||| !||||||||||||! !! :!!||| !::: ::: ::: ||| ValValPheIleCysAlaProGlnMetThrHisLeuValLeuLysSerThrAsnLeuAsp 36036 : GTTGTCTTCATATGCGCTCCCCAAATGACGCATTTGGTAttaaaatcgacgaatttgGAC : 36093 22 : LeuValIleGluAsnLeuSerThrAsnIleThrValMetValSerLeuMetLysThrLeu : 41 !||||||||||||||||||..!|||||| !!:!!:!: !!|||||| ||| !:!! GluValIleGluAsnLeuSerValAsnIleProMetLeuPheSerLeuGlyLysGlnIle 36094 : GAGGTGATAGAGAATCTGTCGGTCAACATACCGATGCTCTTCTCATTGGGCAAGCAAATC : 36153 42 : ThrValTrpIleAsnGlyIle{P} >>>> Target Intron 1 >>>> {ro}Leu : 50 ! !:!! ! !..! !!! !{ } 381 bp {!!}||| IleLeuArgTyrArgArgLys{A}++ ++{la}Leu 36154 : ATTCTGCGTTATCGTAGAAAA{G}gt.........................ag{CG}CTA : 36561 51 : LysSerLeuLeuArgTyrMetAlaAsnAspTrpAspAlaValThrThrAsnIleGluArg : 70 !! !|||:!!!!! ! !!: !:!!||||||! ! ! !! ! !!.!.:!:!!:||| ValPheLeuMetSerGlnIlePheAspAspTrpAlaGluProIleProGluValAspArg 36562 : GTATTCTTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTGGATCGC : 36621 71 : GluThrMetValAsnThrAlaArgIleThrArgLysIleThrIleGlySerThrLeuMet : 90 .!.||||||:!!!!.||||||!:!|||!:!|||! !|||:!!|||! !!!!:!!:!!:!! HisThrMetLeuLysThrAlaLysIleSerArgMetIleSerIleValCysSerIleLeu 36622 : CACACGATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTCTGTTCTATCCTG : 36681 91 : ValAsnIleValIleLeuAlaPheValProAlaArgLeu<->SerSerMetLysAsn<-> : 109 ..! !!:!!:!!:!!|||||||||:!! !! !!:!:!! |||||||||:!!||| ThrTyrValMetValLeuAlaPheLeuSerLeuGlnIleTrpSerSerMetGlnAsnThr 36682 : ACGTATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGCAGCATGCAAAACACC : 36741 110 : <-><-><->AsnAspIleThrLeuPheLeuArgGlyTyrPheProTyrAsnThrSerIle : 125 |||! ! !|||.!!:!!! !!.! |||||||||:!!|||!:!! ! SerGluPheAsnValGlyGlyLeuLeuIleProAlaThrPheProTyrAspThrAsnLys 36742 : TCGGAGTTCAACGTAGGAGGACTACTTATCCCGGCCACATTTCCATACGACACGAATAAA : 36801 126 : SerProAsnPheGluLeuThrMetIleGlyGlnTyrValAlaAlaIleTyrAlaAlaAsn : 145 |||||||||!:!|||:!!||| !:!!||||||!:!|||!.!.!!:!:! ::!|||! SerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrValLeuSerAlaIle 36802 : AGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATA : 36861 146 : ThrTyrThrThrValAspThrLeuValValLeuLeuIlePheHisValCysGlyGlnLeu : 165 !|||:!! ! !!||||||!!!|||!.!:!!|||:!:!!.|||:!!|||||||||||| CysTyrSerCysPheAspThrPheValAlaValLeuValLeuHisIleCysGlyGlnLeu 36862 : TGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTA : 36921 166 : SerIleLeuArgGlnAspLeuGlyArgIleAspSerTyrAspLysLysAsnIleGluMet : 185 !!!:!!|||||| ! !|||! !!.!:!!! !!:! ! !|||:!!! ! ! ! ThrValLeuArgIleAlaLeuGluAsnLeuAlaAsnThrThrIleLysAspAsnTyrSer 36922 : ACTGTTCTCCGCATTGCCCTCGAGAATCTTGCTAACACGACAATAAAAGACAACTACAGC : 36981 186 : LysMetGlnLys : 189 |||.!.|||:!! LysPheGlnGlu 36982 : AAGTTCCAAGAA : 36995 vulgar: gi|815920798|ref|XP_012245316.1| 1 189 . KQ414804.1 36035 36995 + 258 M 47 141 S 0 1 5 0 2 I 0 377 3 0 2 S 1 2 M 54 162 G 0 3 M 5 15 G 0 12 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36036 36995 258 + . gene_id 3 ; sequence gi|815920798|ref|XP_012245316.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 36036 36177 . + . KQ414804.1 exonerate:protein2genome:local exon 36036 36177 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 36178 36179 . + . intron_id 1 ; splice_site "gt" KQ414804.1 exonerate:protein2genome:local intron 36178 36558 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 36557 36558 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 36559 36995 . + . KQ414804.1 exonerate:protein2genome:local exon 36559 36995 . + . insertions 15 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36036 36995 258 + . alignment_id 3 ; Query gi|815920798|ref|XP_012245316.1| ; Align 36036 2 141 ; Align 36561 50 162 ; Align 36726 104 15 ; Align 36753 109 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920798|ref|XP_012245316.1| PREDICTED: odorant receptor 67c-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 223 Query range: 215 -> 348 Target range: 33610 -> 34534 216 : TyrSerGluGluAsnLysLeuGluPheAlaGlyArgIleGluAsnSerPheAsnMetMet : 235 |||...... ::: ..!|||||| !! !||||||:!!!!!||||||! :!! TyrAspAsnPheSerHis***ArgPheAlaThrMetIleGluAspCysPheAsnThrLeu 33611 : tacgacaatttttctcattaaaGGTTCGCAACTATGATCGAGGATTGTTTCAACACATTG : 33668 236 : LeuLeuPheGlnMetLeuSerCysThrIleGlnIleCysSerGlnPheTyrGlnValMet : 255 ||||||.!!||||||||| !||||||:!!:!!||||||! !||| !!:! ! !!.!. LeuLeuIleGlnMetLeuLeuCysThrValGluIleCysPheGlnGlyPheLeuPhePhe 33669 : CTATTAATTCAGATGCTGCTCTGTACCGTCGAAATATGCTTTCAAGGCTTTTTATTCTTC : 33728 256 : Met >>>> Target Intron 1 >>>> SerLeuGlyGluAsnThrValGluAspM : 266 74 bp !:!! !|||||| ! !! ! . Asp++ ++ValIleLeuGluAsnGluLysGlyIleP 33729 : GATgt.........................agGTGATACTAGAAAACGAGAAAGGAATAT : 33835 267 : etIlePheGlnIleSerPheLeuLeuIleTyrValPheTyrValMetLeuGlnLeuPheL : 286 !.! ! ! |||:!: !|||!!!:!!:!:!:!|||! !!:!:!!:!::!!!!.:!!!:!: heAsnValGlnLeuLeuPhePheValLeuPheValCysPheIleLeuValHisIleTyrI 33836 : TCAACGTGCAATTGCTTTTCTTCGTGCTGTTCGTATGCTTCATCCTTGTACACATCTACA : 33895 287 : euTyrCysTyrMetGlyGluLysLeuAlaAlaGlu >>>> Target Intron 2 >> : 298 !!|||||||||!!:||||||! !||| !.!!.!. 454 bp leTyrCysTyrIleGlyGluMetLeuLeuThrHis+- 33896 : TTTATTGTTACATAGGAGAGATGCTACTCACACATgc....................... : 33933 299 : >> SerThrGluIleAlaAsnIleAlaTyrSerThrLysTrpTyrAsnLeuSerProLy : 316 |||! !|||!!:::!||| !||||||..!:!!!!.|||||||||:!!|||||| ++SerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProPr 33934 : ..agAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCC : 34439 317 : sAsnAlaArgTrpLeuValIleIleMetCysArgAlaThrSerSerProLeuGlnIleTh : 336 !.!.|||!:!!! |||:!!.!!|||||| !||| |||:!! !!|||||| :!:|| oGluAlaLysCysLeuLeuPheIleMetHisArg---ThrAlaArgProLeuCysLeuTh 34440 : AGAAGCCAAGTGCCTTTTATTTATCATGCACAGA---ACCGCTCGTCCACTTTGCTTGAC : 34496 337 : rAlaGlyArgPheCysSerPheThrPheAlaLeuTyr : 348 |||||||!:!||| !!!!!|||:!!.!.! !:!!!:! rAlaGlyLysPheSerThrPheSerMetGluMetPhe 34497 : TGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTC : 34534 vulgar: gi|815920798|ref|XP_012245316.1| 215 348 . KQ414804.1 33610 34534 + 223 M 41 123 5 0 2 I 0 70 3 0 2 M 41 123 5 0 2 I 0 450 3 0 2 M 30 90 G 1 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33611 34534 223 + . gene_id 4 ; sequence gi|815920798|ref|XP_012245316.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33611 33733 . + . KQ414804.1 exonerate:protein2genome:local exon 33611 33733 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33734 33735 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 33734 33807 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 33806 33807 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 33808 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33808 33930 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 2 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 1 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34534 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34534 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 33611 34534 223 + . alignment_id 4 ; Query gi|815920798|ref|XP_012245316.1| ; Align 33611 216 123 ; Align 33808 257 123 ; Align 34385 298 90 ; Align 34475 329 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920798|ref|XP_012245316.1| PREDICTED: odorant receptor 67c-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 106 -> 181 Target range: 31314 -> 31539 107 : LysAsnAsnAspIleThrLeuPheLeuArgGlyTyrPheProTyrAsnThrSerIleSer : 126 :!!!!..!.||| ! !|||.!.! !! !||||||||||||!:!:!!! ! !! !! ! GlnLysGlnAspArgLeuLeuLeuTyrProGlyTyrPheProPheAspIleArgProIle 31315 : CAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTATTTTCCCTTCGATATTCGTCCAATA : 31372 127 : ProAsnPheGluLeuThrMetIleGlyGlnTyrValAlaAlaIleTyrAlaAlaAsnThr : 146 ! .!. !! !|||! .!!|||||| :!!|||||| !! !|||!.!! !!:! GlyValLeuLeuSerThrAsnPheGlyGlnValLeuAlaAlaTyrSerAlaValIleSer 31373 : GGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCAGCGTATTCCGCTGTTATCAGT : 31432 147 : TyrThrThrValAspThrLeuValValLeuLeuIlePheHisValCysGlyGlnLeuSer : 166 ||||||||||||||||||!!!:!!!.!:!!||||||.!.|||:!!|||||||||!!!..! TyrThrThrValAspThrPheIleAlaMetLeuIleMetHisIleCysGlyGlnPheGlu 31433 : TACACCACCGTGGATACATTTATCGCGATGCTGATAATGCACATATGCGGACAATTTGAG : 31492 167 : IleLeuArgGlnAspLeuGlyArgIleAspSerTyrAspLysLys : 181 |||||||||||| ! ||| !!|||:!: ..! !!!!:|||||| IleLeuArgGlnLysLeuArgArgLeuMetAspAspGluLysLys 31493 : ATACTGAGACAGAAATTACGAAGGCTGATGGATGACGAGAAGAAG : 31539 vulgar: gi|815920798|ref|XP_012245316.1| 106 181 . KQ414804.1 31314 31539 + 146 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31315 31539 146 + . gene_id 5 ; sequence gi|815920798|ref|XP_012245316.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31315 31539 . + . KQ414804.1 exonerate:protein2genome:local exon 31315 31539 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 31315 31539 146 + . alignment_id 5 ; Query gi|815920798|ref|XP_012245316.1| ; Align 31315 107 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920798|ref|XP_012245316.1| PREDICTED: odorant receptor 67c-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 297 -> 348 Target range: 39965 -> 40115 298 : SerThrGluIleAlaAsnIleAlaTyrSerThrLysTrpTyrAsnLeuSerProLysAsn : 317 ||||||! !|||!.!.!. !||||||..! !!!.||||||:!!||| !!||||||:!! SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 318 : AlaArgTrpLeuValIleIleMetCysArgAlaThrSerSerProLeuGlnIleThrAla : 337 ||| !! !|||||||||:!:!!:||||||||| ! !||| !!!|||||||||||| AlaValSerLeuValIleValIleCysArgAlaGlnValSer---PheGlnIleThrAla 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCC---TTTCAAATAACCGCT : 40080 338 : GlyArgPheCysSerPheThrPheAlaLeuTyr : 348 |||!:!||| !! !!|||:!!.!!! !|||!:! GlyLysPheSerProPheSerLeuGluLeuPhe 40081 : GGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTT : 40115 vulgar: gi|815920798|ref|XP_012245316.1| 297 348 . KQ414804.1 39965 40115 + 112 M 34 102 G 1 0 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40115 112 + . gene_id 6 ; sequence gi|815920798|ref|XP_012245316.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39966 40115 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40115 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 39966 40115 112 + . alignment_id 6 ; Query gi|815920798|ref|XP_012245316.1| ; Align 39966 298 102 ; Align 40068 333 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920798|ref|XP_012245316.1| PREDICTED: odorant receptor 67c-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 222 -> 297 Target range: 37568 -> 37928 223 : GluPheAlaGlyArgIleGluAsnSerPheAsnMetMetLeuLeuPheGlnMetLeuSer : 242 ...::!|||! !! !:!:|||:!!!!!||||||!!:||||||||| !!|||! |||! ! ArgTyrAlaValIleValGluAspCysPheAsnIleMetLeuLeuValGlnThrLeuMet 37569 : aggtaCGCTGTGATAGTGGAAGATTGCTTCAACATCATGCTGCTCGTTCAAACTTTAATG : 37626 243 : CysThrIleGlnIleCysSerGlnPheTyrGlnVal >>>> Target Intron 1 > : 255 |||||| !..!:!!|||! ! |||!:::!! 135 bp CysThrAlaMetLeuCysMetThrGlyTyrArgMet-+ 37627 : TGCACCGCCATGCTCTGTATGACTGGATATCGCATGat...................... : 37667 256 : >>> MetMetSerLeuGlyGluAsnThrValGluAspMetIlePheGlnIleSerPheL : 273 :!: !|||:!!..!:!!.!. !! !!!:! !|||.!! ::: |||. --Leu***SerValAsnGlnGluGlnGluAspValProIleIleGlyValIlePheP 37668 : ...taTTATAGTCTGTTAATCAGGAGCAAGAGGATGTACCGATTATTggagtaatatttt : 37854 274 : euLeuIleTyrValPheTyrValMetLeuGlnLeuPheLeuTyrCysTyrMetGlyGluL : 293 ..::: :!!||| !|||..!||||||...||||||:::|||||||||::!||||||! heIleSerHisValThrTyrThrMetLeuHisLeuPheIleTyrCysTyrValGlyGluT 37855 : ttatctcaCACGTGACCTATACCATGTTAcatctatttatttattgctacgtGGGCGAAA : 37914 294 : ysLeuAlaAlaGlu : 297 !||| !!.!:!! hrLeuLeuGlyGln 37915 : CACTTCTTGGACAA : 37928 vulgar: gi|815920798|ref|XP_012245316.1| 222 297 . KQ414804.1 37568 37928 + 105 M 32 96 5 0 2 I 0 131 3 0 2 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 37569 37928 105 + . gene_id 7 ; sequence gi|815920798|ref|XP_012245316.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 37569 37664 . + . KQ414804.1 exonerate:protein2genome:local exon 37569 37664 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 37665 37666 . + . intron_id 1 ; splice_site "AT" KQ414804.1 exonerate:protein2genome:local intron 37665 37799 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 37798 37799 . + . intron_id 0 ; splice_site "TA" KQ414804.1 exonerate:protein2genome:local cds 37800 37928 . + . KQ414804.1 exonerate:protein2genome:local exon 37800 37928 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 37569 37928 105 + . alignment_id 7 ; Query gi|815920798|ref|XP_012245316.1| ; Align 37569 223 96 ; Align 37800 255 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815914351|ref|XP_012242451.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 135 -> 183 Target range: 51888 -> 52032 136 : GluSerMetLysValSerGluAlaPheTyrAlaThrAspTrpAsnAsnLeuSerLeuHis : 155 ::!|||:!::!!:!!:!!.!.||| |||! !:!!!!:||| !!|||||||||! ! ! GlnSerValGluIleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLys 51889 : caGAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAA : 51946 156 : AsnGlnLysLeuLeuLeuLeuValMetThrLeuGlyGlnGlnAsnLeuHisValThrAla : 175 ||| !||||||||||||:!!:!!||| !! !!.!::! ! !|||!!.:!!|||||| AsnAlaLysLeuLeuLeuIleIleMetArgArgAlaArgLeuProLeuGlnIleThrAla 51947 : AATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCA : 52006 176 : GlyLysPheTyrThrPheSerLeu : 183 |||!:!||| !||||||!!!||| GlyArgPheAlaThrPheThrLeu 52007 : GGTAGATTTGCTACTTTCACTCTG : 52032 vulgar: gi|815914351|ref|XP_012242451.1| 135 183 . KQ414804.1 51888 52032 + 111 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51889 52032 111 + . gene_id 1 ; sequence gi|815914351|ref|XP_012242451.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 51889 52032 . + . KQ414804.1 exonerate:protein2genome:local exon 51889 52032 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51889 52032 111 + . alignment_id 1 ; Query gi|815914351|ref|XP_012242451.1| ; Align 51889 136 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 116 -> 255 Target range: 36572 -> 36983 117 : IleArgGlnLeuArgAsnAspTrpLysArgValGlnAspProSerHisArgAlaIleMet : 136 !!:!!!|||:!! !:!!|||||| !..! ! ! ! !!||| !! ||| MetSerGlnIlePheAspAspTrpAlaGluProIleProGluValAspArgHisThrMet 36573 : ATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACGATG : 36630 137 : LeuLysTyrAlaGlyValSerArgLysLeuIleThrValCysAlaValPheIleTyrThr : 156 |||||| !||| !:!!||||||! !:!! !! !||||||:!!:!!.!.! |||..! LeuLysThrAlaLysIleSerArgMetIleSerIleValCysSerIleLeuThrTyrVal 36631 : CTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTCTGTTCTATCCTGACGTATGTC : 36690 157 : GlyGlyMetSerTyrHisThrValAlaGlnPheLeuSerLysGluArgThrArgGluAsn : 176 !! !:!!:!!!:! :!!:!! ! !:: !|||! !:!!!.!||| !||| MetValLeuAlaPheLeuSerLeuGlnIleTrpSerSerMetGlnAsnThrSerGlu--- 36691 : ATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGCAGCATGCAAAACACCTCGGAG--- : 36750 177 : TyrThrValArgProLeuAlaTyrIleGlyTyrAspProPhePheAspThrGlnSerSer : 196 !:!!.!||| !! !||| ! ! !.! !||| !:!||||||.!.!.!||| PheAsnValGlyGlyLeuLeuIleProAlaThrPhePro---TyrAspThrAsnLysSer 36751 : TTCAACGTAGGAGGACTACTTATCCCGGCCACATTTCCA---TACGACACGAATAAAAGT : 36804 197 : ProThrTyrGluIleValPheLeuLeuHisCysPheAlaAlaMetIleMetTyrSerIle : 216 |||!.!|||||||||..!!::||| !!!.! ! ! !.!.!!:!!:!:! ! ! ! ProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCys 36805 : CCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGT : 36864 217 : ThrThrValAlaTyrGlyLeuAlaAlaValPheValThrHisValCysGlyGlnIleGln : 236 !:!! ! ! !! !!!!!.!||||||.!!||| !|||:!!|||||||||:!! TyrSerCysPheAspThrPheValAlaValLeuValLeuHisIleCysGlyGlnLeuThr 36865 : TATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACT : 36924 237 : IleGlnIleAlaArgLeuGlnAsnLeuValGluSerLysAspArgAspLeuPheSer : 255 :!!! ! ! !|||:!!||||||!.!.!.!!!! ! !:!||| !!:!||| ValLeuArgIleAlaLeuGluAsnLeuAlaAsnThrThrIleLysAspAsnTyrSer 36925 : GTTCTCCGCATTGCCCTCGAGAATCTTGCTAACACGACAATAAAAGACAACTACAGC : 36983 vulgar: gi|815911906|ref|XP_012241394.1| 116 255 . KQ414804.1 36572 36983 + 127 M 59 177 G 1 0 M 13 39 G 1 0 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36573 36983 127 + . gene_id 1 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36573 36983 . + . KQ414804.1 exonerate:protein2genome:local exon 36573 36983 . + . insertions 0 ; deletions 2 KQ414804.1 exonerate:protein2genome:local similarity 36573 36983 127 + . alignment_id 1 ; Query gi|815911906|ref|XP_012241394.1| ; Align 36573 117 177 ; Align 36750 177 39 ; Align 36789 191 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 309 -> 397 Target range: 33840 -> 34558 310 : IleAlaThrLeuThrTyrMetThrLeuLeuIleSerPheThrPheAsnIlePheIlePhe : 329 :!: ! !||| !!:!:!! !!!!:!! !! !.!! ! ! :!!|||!:!|||!:! ValGlnLeuLeuPhePheValLeuPheValCysPheIleLeuValHisIleTyrIleTyr 33841 : GTGCAATTGCTTTTCTTCGTGCTGTTCGTATGCTTCATCCTTGTACACATCTACATTTAT : 33898 330 : CysTyrIleGlyGluLeuLeuSerGluGln >>>> Target Intron 1 >>>> C : 340 |||||||||||||||:!!||| ! !!!. 454 bp CysTyrIleGlyGluMetLeuLeuThrHis+- ++S 33899 : TGTTACATAGGAGAGATGCTACTCACACATgc.........................agA : 34385 341 : ysSerGluIleGlyThrValSerTyrGluIleAspTrpTyrAsnLeuProAlaLysGluA : 360 !!!!!|||!!:.!!!.! !:!!|||||| !:!!|||||||||:!! !! !! !|||| erArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProProGluA 34386 : GCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCAGAAG : 34445 361 : laTyrAspLeuIleLeuLeuIleSerIleSerGlnTyrProProLysLeuThrAlaGlyL : 380 || ! !|||:!!!!!:!!!!: !! !!!! !|||! ! ||||||||||||| laLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAlaGlyL 34446 : CCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCAGGAA : 34505 381 : ysIleIleGluLeuSerLeuAsnThrPheSerSerValAlaLysThrSerLeu : 397 ||.!!! ! !!!|||:!!.!.! !||||||!!!|||::! :::::: ysPheSerThrPheSerMetGluMetPheSerThrValSerProIleAsnIle 34506 : AATTCAGTACCTTCTCCATGGAAATGTTCAGTACTGTAAGCccgataaatatt : 34558 vulgar: gi|815911906|ref|XP_012241394.1| 309 397 . KQ414804.1 33840 34558 + 116 M 30 90 5 0 2 I 0 450 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33841 34558 116 + . gene_id 2 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33841 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33841 33930 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 1 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34558 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34558 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33841 34558 116 + . alignment_id 2 ; Query gi|815911906|ref|XP_012241394.1| ; Align 33841 310 90 ; Align 34385 340 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927462|ref|XP_012248265.1| PREDICTED: odorant receptor 49a-like, partial [Bombus impatiens] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 99 -> 182 Target range: 485686 -> 485932 100 : MetValLeuPheLeuLeuValProLeuIleSerProMetMetAspIleLeuLeuProL : 119 :!::!!:!!.!.:!!|||! ! !!!!! !!:! !!!::!!|||||||||:!!|||| LeuLeuValLeuIleLeuGlyIlePheAsnAsnSerIleLeuAspIleLeuIleProL 485687 : TTACTTGTGCTGATTCTTGGTATATTTAACAACAGTATTCTGGACATTTTGATTCCTT : 485744 120 : euAsnGluThrArgProArgGlnGlnLeuLeuAsnValAsnTyrValLeuPheAspSe : 138 ||||| ! |||||||||||| ! ! !:!!||| !.!.:!! !!:!! |||.. euAsnTyrThrArgProArgThrIleProIleAsnSerGluHisPheVal---AspGl 485745 : TGAATTACACTCGTCCGCGGACGATTCCTATAAACTCGGAACATTTTGTC---GATCA : 485798 139 : rHisAsnTyrPhePheCysValTyrLeuGlnLeuSerTrpAlaAlaIleValValSer : 157 !!!.!!.||||||!:! !:!! !!!.:!! ! !!.!|||:!!! !:!! nGlnLysTyrPheTyrProIleAlaAlaHisValValLeuPheValIleIleGlyAla 485799 : GCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCTCTTCGTCATTATTGGCGCG : 485855 158 : IleSerIleValThrValAspSerLeuLeuMetLeuIleValHisHisAsnSerGlyL : 177 ||| !:!!:!!!:!...::: |||:::||| !|||:!!!!.|||!.!!!!|||| IleValLeuLeuSerThrGluIleLeuIleMetAlaIleIleGlnHisThrCysGlyL 485856 : ATAGTATTACTCAGCaccgaaatattaattatggCGATAATACAGCACACCTGTGGTT : 485915 178 : euPheIleValCysGly : 182 ||!:!! !:!! !||| euTyrThrIleValGly 485916 : TGTATACAATCGTTGGG : 485932 vulgar: gi|815927462|ref|XP_012248265.1| 99 182 . KQ414815.1 485686 485932 + 109 M 36 108 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485687 485932 109 + . gene_id 1 ; sequence gi|815927462|ref|XP_012248265.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485687 485932 . + . KQ414815.1 exonerate:protein2genome:local exon 485687 485932 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 485687 485932 109 + . alignment_id 1 ; Query gi|815927462|ref|XP_012248265.1| ; Align 485687 100 108 ; Align 485795 137 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 102 -> 179 Target range: 482004 -> 482235 103 : PheIleIleIleProLeuSerProValIleLeuAspIleIleSerProLeuAsnGluT : 122 .!.|||:!: !! !:!!||| ! !!:!!||||||:!!||| !||||||||||||| LeuIleLeuCysHisMetSerSerPheValLeuAspValIleValProLeuAsnGluT 482005 : CTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTCCTCTAAACGAGA : 482062 123 : hrArgHisArgGluGlnMetPheArgValThrTyrPheLeuAspGluAspGlnTyrPh : 141 ||||| !.!:!! ! !:!! !||||||:!!|||:!!.!.:!!|||! hrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGlnGlnLysTyrSe 482063 : CTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCAGCAGAAATATTC : 482119 142 : eTyrProIleTyrPheHisSerLeuTrpCysAlaPheIleIleThrMetIleAlaVal : 160 ! !||| ||||||..!! !!::! ! !.!!:!!:!!.!!! !||| !||| rLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAlaThrIleIleVal 482120 : ACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCAACGATCATTGTC : 482176 161 : ThrIleAspSerLeuTyrIleGlnIleValHisHisAspSerAlaLeuPheAlaIle : 179 !|||!!:!!!||| !:!!..! :!!.!.|||! !:!!::!||||||.!!:!! GlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerLeuPheThrLeu 482177 : GGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: gi|815916412|ref|XP_012243371.1| 102 179 . KQ414815.1 482004 482235 + 127 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482005 482235 127 + . gene_id 1 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482005 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 482005 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482005 482235 127 + . alignment_id 1 ; Query gi|815916412|ref|XP_012243371.1| ; Align 482005 103 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 111 -> 189 Target range: 485722 -> 485956 112 : IleLeuAspIleIleSerProLeuAsnGluThrArgHisArgGluGlnMetPheArgV : 131 ||||||||||||:!:! !||||||||| ! ||||||! ||| ! .!.!.! IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 132 : alThrTyrPheLeuAspGluAspGlnTyrPheTyrProIleTyrPheHisSerLeuTr : 150 ! !:!!|||:!!|||:!!.!.:!!||||||||||||||| ||| !:!! erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 151 : pCysAlaPheIleIleThrMetIleAlaValThrIleAspSerLeuTyrIleGlnIle : 169 ! !!.!.!!||| !.!!!!::!! !:!!!:! ::: ||| ::: !||| uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 170 : ValHisHisAspSerAlaLeuPheAlaIleCysGlyGlnAlaLeuIleThrAlaArgL : 189 :!!!!.||| !!!!!.!|||!:!.!!||| !||| !!!.! !||||||!.!..!| IleGlnHisThrCysGlyLeuTyrThrIleValGly***ValAspIleThrValGluL 485895 : ATACAGCACACCTGTGGTTTGTATACAATCGTTGGGTAAGTTGATATAACAGTAGAAA : 485954 190 : ys : 189 || ys 485955 : AA : 485956 vulgar: gi|815916412|ref|XP_012243371.1| 111 189 . KQ414815.1 485722 485956 + 127 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485956 127 + . gene_id 2 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485956 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485956 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485956 127 + . alignment_id 2 ; Query gi|815916412|ref|XP_012243371.1| ; Align 485723 112 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 105 -> 179 Target range: 457189 -> 457411 106 : IleProLeuSerProValIleLeuAspIleIleSerProLeuAsnGluThrArgHisA : 125 :!:! !|||! !|||:!!:!!|||||||||:!: !||||||||||||:!!|||! ! LeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgProC 457190 : TTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCT : 457247 126 : rgGluGlnMetPheArgValThrTyrPheLeuAspGluAspGlnTyrPheTyrProIl : 144 !!||| ! .!!! !!.! !||||||:!!||| ! ! :!!|||.!.:!! !|| ysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIl 457248 : GTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATAT : 457304 145 : eTyrPheHisSerLeuTrpCysAlaPheIleIleThrMetIleAlaValThrIleAsp : 163 | ! |||! !:!! !||| !.!.||| .!!! ! !..!.!!! !!!: eIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGlu 457305 : CATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAA : 457361 164 : SerLeuTyrIleGlnIleValHisHisAspSerAlaLeuPheAlaIle : 179 |||||| !||| !! !|||! |||! !!!!!.!|||||| !:!! SerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457362 : TCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: gi|815916412|ref|XP_012243371.1| 105 179 . KQ414815.1 457189 457411 + 114 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457190 457411 114 + . gene_id 3 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457190 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457190 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457190 457411 114 + . alignment_id 3 ; Query gi|815916412|ref|XP_012243371.1| ; Align 457190 106 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 87 -> 179 Target range: 475494 -> 475770 88 : LeuGlyGluIleTyrArgThrPheMetLeuSerCysMetSerGlyPheIleIleIleP : 107 :::|||...||| !! !..!.!.:!:! ! !! !!:! ! !.!.|||:!::!!! ValGlyAsnIleValThrValLeuValTyrProThrIlePheThrMetIleLeuLeuL 475495 : gttgggaatattgtTACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTC : 475552 108 : roLeuSerProValIleLeuAspIleIleSerProLeuAsnGluThrArgHisArgGl : 126 !!!!||| !! !||||||||| !:!:! !||||||||||||:!!|||! !!!! euPheSerSerLysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTr 475553 : TCTTCTCGTCTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTG : 475609 127 : uGlnMetPheArgValThrTyrPheLeuAspGluAspGlnTyrPheTyrProIleTyr : 145 !...:!!...|||::: ||||||::::::|||.!.:!!|||||||||! !! ! pSerLeuIleArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerVal 475610 : GTCTCTGAtacgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTG : 475666 146 : PheHisSerLeuTrpCysAlaPheIleIleThrMetIleAlaValThrIleAspSerL : 165 .!!:!!..! ! !.!!:!:.!! !! ! !|||.!!! !!!::!!: IleTyrGlnThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaI 475667 : ATCTATCAGACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAA : 475726 166 : euTyrIleGlnIleValHisHisAspSerAlaLeuPheAlaIle : 179 !!!:!! !..! :!!!!.||| !! :::|||||| ||| lePheThrMetTrpLeuGlnHisCysIleSerLeuPheGluIle 475727 : TATTTACCATGTGGTTGCAACATTGCATaagtttatttgaaatt : 475770 vulgar: gi|815916412|ref|XP_012243371.1| 87 179 . KQ414815.1 475494 475770 + 106 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475495 475770 106 + . gene_id 4 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475495 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475495 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475495 475770 106 + . alignment_id 4 ; Query gi|815916412|ref|XP_012243371.1| ; Align 475495 88 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 130 -> 175 Target range: 1228545 -> 1228410 131 : TyrGluAlaSerTrpTyrAsnThrAsnProLysThrGlnAlaLeuTyrLeuLeuAl : 149 |||...:!!!!!||||||!!...!::: !!||| !||| !:!! !! !:!! TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 150 : aLeuArgArgSerLeuThrProCysTyrLeuThrAlaGlyGlyLeuIleArgLeuA : 168 !! !! !|||:!!|||! !|||||| !|||||||||||||||||| !..!:!!| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 169 : snMetGluSerPheSerGluVal : 175 ||||||||!:!|||:!!.!.||| snMetGluAsnPheAlaAsnVal 1228433 : ACATGGAGAACTTTGCAAACGTT : 1228411 vulgar: gi|815925234|ref|XP_012247254.1| 130 175 . KQ414851.1 1228545 1228410 - 111 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1228545 111 - . gene_id 1 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228411 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1228545 111 - . alignment_id 1 ; Query gi|815925234|ref|XP_012247254.1| ; Align 1228546 131 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 130 -> 183 Target range: 1233381 -> 1233222 131 : TyrGluAlaSerTrpTyrAsnThrAsnProLysThrGlnAlaLeuTyrLeuLeuAl : 149 |||...:!!!!!||||||!!...! !!||| !||| !:!! !! ! ! TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMe 1233381 : TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGAT : 1233327 150 : aLeuArgArgSerLeuThrProCysTyrLeuThrAlaGlyGlyLeuIleArgLeuA : 168 !! !! !|||:!!|||! !|||||| !|||||||||||||||||| !..!:!!| tGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetA 1233326 : GCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGA : 1233270 169 : snMetGluSerPheSerGluValIleLysLeuCysValSerTyrTyr : 183 ||||||||!:!|||:!!.!.||| ! ! :!! !! !!:!||| snMetGluAsnPheAlaAsnValArgTyrIleValGlnIlePheTyr 1233269 : ACATGGAGAACTTTGCAAACGTTCGTTACATTGTACAGATATTCTAT : 1233223 vulgar: gi|815925234|ref|XP_012247254.1| 130 183 . KQ414851.1 1233381 1233222 - 107 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233223 1233381 107 - . gene_id 2 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1233223 1233381 . - . KQ414851.1 exonerate:protein2genome:local exon 1233223 1233381 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233223 1233381 107 - . alignment_id 2 ; Query gi|815925234|ref|XP_012247254.1| ; Align 1233382 131 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 589 Query range: 95 -> 350 Target range: 1234320 -> 1233129 96 : MetLeuSerCysMetSerGlyPheIleIleIleProLeuSerProValIleLeuAs : 114 :!:||||||! !||| !! !|||:!::!::!!|||||| ! ! !.!!||||| LeuLeuSerPheMetValValPheLeuLeuValProLeuValPheProPheLeuAs 1234320 : TTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGA : 1234266 115 : pIleIleSerProLeuAsnGluThrArgHisArgGluGlnMetPheArgValThrT : 133 |:!!:!! !||||||||||||||||||! |||:!!||| |||||||||!.!| pValValLeuProLeuAsnGluThrArgProArgGlnGlnGlyPheArgValAsnT 1234265 : TGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACT : 1234209 134 : yr<->PheLeuAspGluAspGlnTyrPheTyrProIleTyrPheHisSerLeuTrp : 150 || !:!!!!||||||! .!.||||||!:! !:!:||||||!!.! ! !||| yrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrp 1234208 : ATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGG : 1234155 151 : CysAlaPheIleIleThrMetIleAlaValThrIleAspSerLeuTyrIleGlnIl : 169 !!||| !!:!!:!!..!|||||| !:!!|||:!!||||||||||||!!: !|| GlyAlaValValValValMetIleIleIleThrValAspSerLeuTyrMetIleIl 1234154 : GGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGATAAT : 1234098 170 : eValHisHisAspSerAlaLeuPheAlaIleCys{Gl} >>>> Target Intr : 181 |:!!||||||! !|||!.!:!!||||||:!:|||{||} 198 bp eIleHisHisAlaSerGlyMetPheAlaValCys{Gl}++ 1234097 : AATTCACCATGCCAGCGGAATGTTCGCCGTGTGC{GG}gt................ : 1234058 182 : on 1 >>>> {y}GlnAlaLeuIleThrAlaArgLysSerThrAspValAspThr : 195 {|} ! !:!! !|||! !!:!! !! !||| :!! ! ! ++{y}TyrArgValCysThrAspGlnIleMetThrIleIleLysTyr 1234057 : .........ag{C}TATCGAGTTTGTACTGATCAAATAATGACAATAATAAAGTAT : 1233822 196 : AsnLysThrTyrThrGluTrpLeuArgGlnCysLeuThrMetHisAsnAspAlaLe : 214 |||:!! !! .!!..!! |||!:!! ! ! ! ! ! ! !! !! AsnGlu***LeuAlaArgLeuLeuLysProThrAsnLeuCysPheCysTyrIleSe 1233821 : AATGAATAATTAGCCCGATTATTGAAACCGACTAACTTGTGCTTTTGTTACATTTC : 1233765 215 : uGlnLeuPheGluMetLeuAspAspSerSerArgArgSerTyrPhePheGlnIleL : 233 !::!!!!!:!!!:!!:|||:!!!!:|||||||||!.!||||||!!..!!|||:!! rArgPheTyrAspIleLeuAsnGluSerSerArgAsnSerTyrLeuIleGlnValG 1233764 : CAGGTTTTACGATATTCTAAACGAGAGCAGTCGAAATAGCTACTTGATTCAGGTTG : 1233708 234 : euLeuThrMetIleGlyMetThrValThrAlaValGln >>>> Target Intr : 246 !|||!.!|||!!:|||!!:!:!||||||||||||||| 80 bp lyLeuAsnMetMetGlyIleSerValThrAlaValGln+- 1233707 : GATTGAACATGATGGGCATTAGCGTGACCGCTGTCCAGgc................ : 1233667 247 : on 2 >>>> AlaValMetAsnLeuHisGlnProGluGluAlaLeuArgIleGly : 260 .!!|||:!:!..||| !!::!|||! !|||||||||||| !!.! ++ThrValLeuThrLeuAspArgProAlaGluAlaLeuArgCysAla 1233666 : .........agACAGTCCTCACACTGGACAGGCCGGCAGAAGCTCTTAGATGTGCT : 1233547 261 : LeuPheLeuValAlaGlnGlnPheHisLeuLeuIleIleThrLeuProGlyGlnVa : 279 :!!||||||||||||:!!||||||||||||!!!||||||!:!||||||||||||.. ValPheLeuValAlaGluGlnPheHisLeuPheIleIleSerLeuProGlyGlnTh 1233546 : GTGTTCCTTGTAGCGGAGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGAC : 1233490 280 : lIleThrAspHisSerPheGluLeuThrAsnAsp{Il} >>>> Target Intr : 291 !:!!..!||||||!!! :!!|||:!!!!.|||{||} 70 bp rLeuValAspHisCysThrLysLeuSerLysAsp{Il}++ 1233489 : ACTCGTGGATCATTGTACGAAACTATCGAAGGAT{AT}gt................ : 1233450 292 : on 3 >>>> {e}TyrArgSerMetTrpTyrAsnMetProIleAsnValGlnArg : 305 {|}||| !|||! !||||||!!.:!:||| !!!. !!|||||| ++{e}TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArg 1233449 : .........ag{A}TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGA : 1233342 306 : ValLeuHisMetMetGlnMetArgSerSerLysProCysLysLeuThrAlaGlyGl : 324 |||:!!:!!! !||||||!!:|||:!! !||||||||| |||||||||||||| ValIleTyrThrMetGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGl 1233341 : GTAATTTACACGATGCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGG : 1233285 325 : yIleTyrGluMetAsnIleGluAsnPheGlyThr >>>> Target Intron 4 : 336 |:!:||||||||||||!!:|||||||||!.!!.! 75 bp yLeuTyrGluMetAsnMetGluAsnPheAlaAsn++ 1233284 : ATTGTATGAAATGAACATGGAGAACTTTGCAAACgt.................... : 1233247 337 : >>>> ThrPheLysThrCysValSerTyrPheThrValLeuLeuSerLeu : 350 |||||||||||||||:!!||||||||||||:!!|||:!!|||||| ++ThrPheLysThrCysMetSerTyrPheThrMetLeuMetSerLeu 1233246 : .....agaCATTCAAAACGTGCATGTCATACTTCACAATGCTGATGTCACTT : 1233130 vulgar: gi|815916412|ref|XP_012243371.1| 95 350 . KQ414851.1 1234320 1233129 - 589 M 38 114 G 0 3 M 47 141 S 0 2 5 0 2 I 0 194 3 0 2 S 1 1 M 64 192 5 0 2 I 0 76 3 0 2 M 45 135 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 44 132 5 0 2 I 0 71 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233130 1234320 589 - . gene_id 1 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1234061 1234320 . - . KQ414851.1 exonerate:protein2genome:local exon 1234061 1234320 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234059 1234060 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233863 1234060 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233863 1233864 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233670 1233862 . - . KQ414851.1 exonerate:protein2genome:local exon 1233670 1233862 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233668 1233669 . - . intron_id 2 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1233590 1233669 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1233590 1233591 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233453 1233589 . - . KQ414851.1 exonerate:protein2genome:local exon 1233453 1233589 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233451 1233452 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233383 1233452 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1233383 1233384 . - . intron_id 2 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233250 1233382 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233382 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 4 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 4 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 3 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233130 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233130 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233130 1234320 589 - . alignment_id 1 ; Query gi|815916412|ref|XP_012243371.1| ; Align 1234321 96 114 ; Align 1234204 134 141 ; Align 1233862 182 192 ; Align 1233590 246 135 ; Align 1233382 292 132 ; Align 1233175 336 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 382 Query range: 13 -> 181 Target range: 1246447 -> 1243599 14 : ValGlnIleTyrThrSerLeuTyrAlaLysAspValAlaLysPheLeuGluAlaIl : 32 :!!|||!!:!:! !:!!:!! !!.!||||||:!!! ! ! :!!|||.!!:! IleGlnMetPheGluAlaIleIleValLysAspIleAspAlaThrMetGluThrVa 1246447 : ATACAAATGTTCGAAGCGATAATTGTAAAGGACATCGATGCAACGATGGAAACCGT : 1246393 33 : eProValIleThrThrLeuThrAlaValLeuIleLysLeuLeuAsnHisValIleT : 51 !|||||||||..!||| ! !... :::||||||||||||||||||:!!||| lProValIleValThrGluLeuValCysValIleLysLeuLeuAsnHisIleIleA 1246392 : ACCTGTAATAGTCACCGAATTGgtttgtgtaataaaattgctGAATCATATCATCA : 1246336 52 : yrLysGluAsn >>>> Target Intron 1 >>>> PheGluLysMetPheH : 60 !!|||! !!!. 1270 bp |||!!:|||:!!!:! snLysGlyLys++ ++PheAspLysLeuTyrA 1246335 : ATAAAGGAAAGgt.........................agTTCGACAAGTTGTACG : 1245039 61 : isIleIleLysLysAspTrpGluLeuLeuAsnAspLysSerGluAlaGlnIleLeu : 78 !!|||!!:||||||!!:|||!!::!!|||!:! ..!||| !||||||||| spIleMetLysLysGluTrpAspMetLeuSer---LeuAspGluGlnGlnIleLeu 1245038 : ATATCATGAAGAAAGAATGGGATATGTTAAGT---CTCGACGAGCAGCAGATTCTC : 1244988 79 : LysGluIleThrLysGluGlyLysLysLeuGlyGluIleTyrArg{T} >>>> T : 94 :!!||||||||||||..!|||!..|||||| !.!.|||||||||{!} GluGluIleThrLysArgGlySerLysLeuThrAsnIleTyrArg{S}++ 1244987 : GAAGAAATCACTAAACGAGGAAGTAAATTAACCAATATATACAGA{A}gt...... : 1244937 95 : arget Intron 2 >>>> {hr}PheMetLeuSerCysMetSerGlyPheIleI : 105 1077 bp {:!} !:!!!!!! !! ! !! ! !|||:!!: ++{er}ThrLeuPheTyrPheSerIleIlePheValL 1244936 : ...................ag{GT}ACTTTGTTCTATTTCTCGATAATATTCGTAT : 1243830 106 : leIleProLeuSerProValIleLeuAspIleIleSerProLeuAsnGluThrArg : 123 !!.!!||||||! !||| !|||||||||:!!:!!||||||||||||||||||||| euPheProLeuIleProProIleLeuAspValValSerProLeuAsnGluThrArg 1243829 : TATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGAGACTCGA : 1243776 124 : HisArgGluGlnMetPheArgValThrTyrPheLeuAspGluAspGlnTyrPheTy : 142 !||| !::::::...:::::: |||.!.!!!||| :::::: ||||| SerArgIleGluValIleLysLeuGlnTyrLeuPheAspMetGluLysAsnPheTy 1243775 : TCTCGGATAGaagtaataaaattgcaataccTGTTCGACAtggagaagaattttta : 1243719 143 : rProIleTyrPheHisSerLeuTrpCysAlaPheIleIleThrMetIleAlaValT : 161 | :::||| !!:!!!!! !||||||:!!|||!!:! !! !|||:!! !:!!| rSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMetValIleIleT 1243718 : ttcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCA : 1243662 162 : hrIleAspSerLeuTyrIleGlnIleValHisHisAspSerAlaLeuPheAlaIle : 179 ||||||||:!!||||||:!: !|||:!!|||||| !!!!.!|||||||||:!! hrIleAspAlaLeuTyrValValIleIleHisHisThrCysGlyLeuPheAlaVal 1243661 : CTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCTGTT : 1243608 180 : CysGly : 181 |||||| CysGly 1243607 : TGCGGG : 1243600 vulgar: gi|815916412|ref|XP_012243371.1| 13 181 . KQ414851.1 1246447 1243599 - 382 M 41 123 5 0 2 I 0 1266 3 0 2 M 16 48 G 1 0 M 22 66 S 0 1 5 0 2 I 0 1073 3 0 2 S 1 2 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1246447 382 - . gene_id 2 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1246325 1246447 . - . KQ414851.1 exonerate:protein2genome:local exon 1246325 1246447 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1246323 1246324 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1245055 1246324 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1245055 1245056 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1244940 1245054 . - . KQ414851.1 exonerate:protein2genome:local exon 1244940 1245054 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local splice5 1244938 1244939 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243863 1244939 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1243863 1243864 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1243600 1243862 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243862 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1246447 382 - . alignment_id 2 ; Query gi|815916412|ref|XP_012243371.1| ; Align 1246448 14 123 ; Align 1245055 55 48 ; Align 1245007 72 66 ; Align 1243861 95 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 361 Query range: 245 -> 352 Target range: 1243006 -> 1242521 246 : AlaValMetAsnLeuHisGlnProGluGluAlaLeuArgIleGlyLeuPheLeuVa : 264 ||| !!!!:|||||| !!!:!||||||||| ! !||||||!.!! !||||||:! AlaPheIleAsnLeuAspArgProGluGluPheAlaArgIleAlaCysPheLeuIl 1243006 : GCCTTTATAAATCTAGATCGGCCTGAAGAATTTGCCAGAATTGCTTGTTTCCTTAT : 1242952 265 : lAlaGlnGlnPheHisLeuLeuIleIleThrLeuProGlyGlnValIleThrAspH : 283 !|||||||||.!!|||||||||:!!|||!:!:!!|||||||||:!!|||||||||! eAlaGlnGlnLeuHisLeuLeuValIleSerValProGlyGlnIleIleThrAspG 1242951 : AGCTCAGCAACTCCACTTGTTAGTCATTAGTGTACCAGGGCAGATCATCACGGATC : 1242895 284 : isSerPheGluLeuThrAsnAsp{Il} >>>> Target Intron 1 >>>> : 291 !.|||! :!!||||||! !|||{||} 72 bp lnSerSerLysLeuThrIleAsp{Il}++ ++ 1242894 : AAAGTTCAAAGTTGACCATTGAC{AT}gt.........................ag : 1242799 292 : {e}TyrArgSerMetTrpTyrAsnMetProIleAsnValGlnArgValLeuHisMe : 309 {|}|||!.!||||||||||||.!.! |||:!: :!!|||!:!:!!||||||!! {e}TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIl 1242798 : {A}TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATAT : 1242745 310 : tMetGlnMetArgSerSerLysProCysLysLeuThrAlaGlyGlyIleTyrGluM : 328 ::!:|||!!:||||||.!!|||||||||||||||..!|||||||||:!!||||||| eValGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluM 1242744 : AGTACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAA : 1242688 329 : etAsnIleGluAsnPheGlyThr >>>> Target Intron 2 >>>> ThrP : 337 ||||||||||||||||||||:!! 92 bp |||| etAsnIleGluAsnPheGlySer++ ++ThrP 1242687 : TGAACATTGAGAATTTTGGATCAgt.........................agacTT : 1242569 338 : heLysThrCysValSerTyrPheThrValLeuLeuSerLeuGlyAsp : 352 |||||||||||:!!||||||||||||:!!|||||||||!!! !||| heLysThrCysIleSerTyrPheThrMetLeuLeuSerPheLysAsp 1242568 : TCAAAACCTGCATATCGTACTTTACGATGCTCTTATCATTCAAAGAC : 1242522 vulgar: gi|815916412|ref|XP_012243371.1| 245 352 . KQ414851.1 1243006 1242521 - 361 M 45 135 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 44 132 5 0 2 I 0 88 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242522 1243006 361 - . gene_id 3 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1242870 1243006 . - . KQ414851.1 exonerate:protein2genome:local exon 1242870 1243006 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242868 1242869 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242798 1242869 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1242798 1242799 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242665 1242797 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242797 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 1 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242522 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242522 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242522 1243006 361 - . alignment_id 3 ; Query gi|815916412|ref|XP_012243371.1| ; Align 1243007 246 135 ; Align 1242797 292 132 ; Align 1242573 336 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 277 Query range: 244 -> 334 Target range: 1222717 -> 1222376 245 : GlnAlaValMetAsnLeuHisGlnProGluGluAlaLeuArgIleGlyLeuPheLe : 263 |||..!:!!||||||:!! !!!:!|||!!:||| !:!!|||:!!!.!:!!|||:! GlnCysIleMetAsnIleAspArgProAspGluLeuIleArgLeuAlaMetPheVa 1222717 : CAGTGCATTATGAACATCGACCGACCTGACGAACTCATCAGGCTTGCGATGTTTGT : 1222663 264 : uValAlaGlnGlnPheHisLeuLeuIleIleThrLeuProGlyGlnValIleThrA : 282 !|||||||||:::|||||||||||||||:!!!:!||||||||||||:!!:!: !| lValAlaGlnLysPheHisLeuLeuIleLeuSerLeuProGlyGlnMetLeuLeuA 1222662 : CGTAGctcagaaatttcatttgctcATCCTTAGTTTACCTGGGCAAATGTTGTTAG : 1222606 283 : spHisSerPheGluLeuThrAsnAsp{Il} >>>> Target Intron 1 >>> : 291 ||||||||!!.! !|||.!!:!! {||} 71 bp spHisSerLeuGlyLeuAlaAspIle{Il}++ 1222605 : ATCATAGTTTAGGATTGGCCGATATA{AT}gt........................ : 1222575 292 : > {e}TyrArgSerMetTrpTyrAsnMetProIleAsnValGlnArgValLeuHi : 308 {|}||| !|||! ||||||.!.:!:|||:!!!!.! !|||!:!:!!:!!:! ++{e}TyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTy 1222574 : .ag{T}TACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTA : 1222457 309 : sMetMetGlnMetArgSerSerLysProCysLysLeuThrAlaGlyGlyIleTyrG : 327 !! !|||||||||||||||! !::!||||||! !|||||||||||||||:!::!!| rThrMetGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisG 1222456 : CACGATGCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATG : 1222400 328 : luMetAsnIleGluAsnPheGly : 334 ||||||||||||||!:!|||||| luMetAsnIleGluSerPheGly 1222399 : AGATGAACATCGAGAGTTTCGGA : 1222377 vulgar: gi|815916412|ref|XP_012243371.1| 244 334 . KQ414851.1 1222717 1222376 - 277 M 46 138 S 0 2 5 0 2 I 0 67 3 0 2 S 1 1 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222377 1222717 277 - . gene_id 4 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1222578 1222717 . - . KQ414851.1 exonerate:protein2genome:local exon 1222578 1222717 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1222576 1222577 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222507 1222577 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1222507 1222508 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222377 1222506 . - . KQ414851.1 exonerate:protein2genome:local exon 1222377 1222506 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222377 1222717 277 - . alignment_id 4 ; Query gi|815916412|ref|XP_012243371.1| ; Align 1222718 245 138 ; Align 1222506 292 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 216 Query range: 95 -> 181 Target range: 1229485 -> 1229224 96 : MetLeuSerCysMetSerGlyPheIleIleIleProLeuSerProValIleLeuAs : 114 :!:|||! !...|||!!!! !|||:!::!::!!||||||! ! ! ! !||||| LeuLeuPheAlaMetCysValPheLeuLeuValProLeuPheGlyProAlaLeuAs 1229485 : TTACTCTTCGCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGA : 1229431 115 : pIleIleSerProLeuAsnGluThrArgHisArgGluGlnMetPheArgValThrT : 133 ||||:!! !|||! !||||||||||||! |||:!!|||:!!|||||||||!.!| pIleValLeuProSerAsnGluThrArgProArgGlnGlnLeuPheArgValAsnT 1229430 : CATCGTCCTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACT : 1229374 134 : yrPheLeu<->AspGluAspGlnTyrPheTyrProIleTyrPheHisSerLeuTrp : 150 ||.!.:!! |||:!!! .!.||||||!:! !:!:|||.!!!!.! !!!!||| yrIleIlePheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPheTrp 1229373 : ATATAATTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTTTGG : 1229320 151 : CysAlaPheIleIleThrMetIleAlaValThrIleAspSerLeuTyrIleGlnIl : 169 |||.!!.!!:!!:!!..!||| ! !:!!|||:!!||||||||||||!!: || CysThrIleValLeuValMetAlaIleIleThrValAspSerLeuTyrMetIleIl 1229319 : TGTACAATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGATCAT : 1229263 170 : eValHisHisAspSerAlaLeuPheAlaIleCysGly : 181 |:!!:!!|||! !|||!.!:!!||||||||||||||| eIleTyrHisAlaSerGlyMetPheAlaIleCysGly 1229262 : AATTTACCATGCCAGCGGAATGTTCGCTATATGCGGG : 1229225 vulgar: gi|815916412|ref|XP_012243371.1| 95 181 . KQ414851.1 1229485 1229224 - 216 M 40 120 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229485 216 - . gene_id 5 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229225 1229485 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229485 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229485 216 - . alignment_id 5 ; Query gi|815916412|ref|XP_012243371.1| ; Align 1229486 96 120 ; Align 1229363 136 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 175 Query range: 95 -> 181 Target range: 1240082 -> 1239821 96 : MetLeuSerCysMetSerGlyPheIleIleIleProLeuSerProValIleLeuAs : 114 :!:!!!||| ::: |||::::!::!!|||::: ||| :::||||| LeuPheSerValLeuPheIlePheLeuValValProIlePheProProLeuLeuAs 1240082 : TTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcctcctcttctggA : 1240028 115 : pIleIleSerProLeuAsnGluThrArgHisArgGluGlnMetPheArgValThrT : 133 ||||:!!!.!|||||||||||||||||| |||:::::::::|||:::|||..!| pIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIlePheLysValAsnT 1240027 : CATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatattcaaagttaaTT : 1239971 134 : yr<->PheLeuAspGluAspGlnTyrPheTyrProIleTyrPheHisSerLeuTrp : 150 || .!!:!!|||..!|||:!! ! ! !! !|||||||||! !! !||| yrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPheHisLeuSerTrp 1239970 : ACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTTCACTTGTCTTGG : 1239917 151 : CysAlaPheIleIleThrMetIleAlaValThrIleAspSerLeuTyrIleGlnIl : 169 .!!.!!! !:!! !!!: !!.!:!!!:! !!!:! !:!!|||:!!! :! ThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIleTyrValLeuLe 1239916 : ACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGTCCTTCT : 1239860 170 : eValHisHisAspSerAlaLeuPheAlaIleCysGly : 181 !:!!|||||| !|||!.!|||||||||:!:..!||| uIleHisHisThrSerGlyLeuPheAlaValAlaGly 1239859 : TATTCATCATACCAGCGGTCTGTTTGCTGTGGCTGgg : 1239822 vulgar: gi|815916412|ref|XP_012243371.1| 95 181 . KQ414851.1 1240082 1239821 - 175 M 38 114 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240082 175 - . gene_id 6 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239822 1240082 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240082 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240082 175 - . alignment_id 6 ; Query gi|815916412|ref|XP_012243371.1| ; Align 1240083 96 114 ; Align 1239966 134 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 161 Query range: 102 -> 181 Target range: 1224264 -> 1224024 103 : PheIleIleIleProLeuSerProValIleLeuAspIleIleSerProLeuAsnGl : 121 !:!!!:! !.!!||||||! ! ! !:!!||||||:!!:!!:!!||||||||||| TyrMetSerPheProLeuIleAsnProValLeuAspValValAlaProLeuAsnGl 1224264 : TATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGA : 1224210 122 : uThrArgHisArgGluGlnMetPheArgValThrTyr<->PheLeuAspGluAspG : 139 |||||||! !|||..!! :!!.!!! !|||!:!||| |||:!!|||||| !!: uThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleAspGluTyrG 1224209 : GACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACG : 1224153 140 : lnTyrPheTyrProIleTyrPheHisSerLeuTrpCysAlaPheIleIleThrMet : 157 !!:!!|||||| !:!: !!|||||| !! ! !!!.!.!! ! ! !||| luHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSerCysGlyMet 1224152 : AGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATG : 1224099 158 : IleAlaValThrIleAspSerLeuTyrIleGlnIleValHisHisAspSerAlaLe : 176 !!: !:!!.!!:!:|||! !||||||||| |||:!! !||| !!!!!.!|| MetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCysGlyLe 1224098 : ATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTGCGGATT : 1224042 177 : uPheAlaIleCysGly : 181 |||||||:!:|||||| uPheAlaValCysGly 1224041 : GTTCGCAGTGTGTGGG : 1224025 vulgar: gi|815916412|ref|XP_012243371.1| 102 181 . KQ414851.1 1224264 1224024 - 161 M 31 93 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224264 161 - . gene_id 7 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224264 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224264 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224264 161 - . alignment_id 7 ; Query gi|815916412|ref|XP_012243371.1| ; Align 1224265 103 93 ; Align 1224169 134 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 149 Query range: 291 -> 333 Target range: 1228545 -> 1228419 292 : TyrArgSerMetTrpTyrAsnMetProIleAsnValGlnArgValLeuHisMetMe : 310 ||| !|||! !||||||!!.:!: !! !!!. !!|||||||||:!!:!!||||| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 311 : tGlnMetArgSerSerLysProCysLysLeuThrAlaGlyGlyIleTyrGluMetA : 329 ||||!!:|||:!! !|||||||||! |||||||||||||||:!:|||||||||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 330 : snIleGluAsnPhe : 333 ||!!:||||||||| snMetGluAsnPhe 1228433 : ACATGGAGAACTTT : 1228420 vulgar: gi|815916412|ref|XP_012243371.1| 291 333 . KQ414851.1 1228545 1228419 - 149 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228420 1228545 149 - . gene_id 8 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228420 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228420 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228420 1228545 149 - . alignment_id 8 ; Query gi|815916412|ref|XP_012243371.1| ; Align 1228546 292 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 242 -> 292 Target range: 1228764 -> 1228614 243 : AlaValGlnAlaValMetAsnLeuHisGlnProGluGluAlaLeuArgIleGlyLe : 261 :!! !!||| !:!!:!: !||| !!::!|||...||||||:!!||| !..!:! SerPheGlnIleMetLeuAlaLeuAspArgProSerGluAlaIleArgTyrSerVa 1228764 : TCTTTCCAGATAATGCTCGCCCTGGATAGACCGAGCGAAGCTATTAGATATTCTGT : 1228710 262 : uPheLeuValAlaGlnGlnPheHisLeuLeuIleIleThrLeuProGlyGlnValI : 280 ! !!|||! !!.! !||||||||||||!!!||||||!:!||||||||||||..!: lValLeuGlyGlyAlaGlnPheHisLeuPheIleIleSerLeuProGlyGlnThrL 1228709 : GGTTCTTGGAGGTGCGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACAC : 1228653 281 : leThrAspHisSerPheGluLeuThrAsnAspIleTyr : 292 !!..!||||||!!! ! !||||||||||||!!:||| euValAspHisCysThrMetLeuThrAsnAspMetTyr 1228652 : TCGTGGATCATTGTACCATGCTAACGAACGATATGTAC : 1228615 vulgar: gi|815916412|ref|XP_012243371.1| 242 292 . KQ414851.1 1228764 1228614 - 125 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228615 1228764 125 - . gene_id 9 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228615 1228764 . - . KQ414851.1 exonerate:protein2genome:local exon 1228615 1228764 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228615 1228764 125 - . alignment_id 9 ; Query gi|815916412|ref|XP_012243371.1| ; Align 1228765 243 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 239 -> 291 Target range: 1238840 -> 1238684 240 : ThrValThrAlaValGlnAlaValMetAsnLeuHisGlnProGluGluAlaLeuAr : 258 ||| ! !!.! !!|||.!!||| !|||:!! !!.!.||| !! !|||||||| ThrSerPheValPheGlnThrValGlyAsnIleAspAspProThrValAlaLeuAr 1238840 : ACTTCATTTGTTTTCCAGACAGTGGGGAATATAGACGATCCGACAGTAGCTTTGAG : 1238786 259 : gIleGlyLeuPheLeuValAlaGlnGlnPheHisLeuLeuIleIleThrLeuProG : 277 |! !!.! ! !!! !! !|||:!!|||.!!||||||!!!||||||!:!:!!|||| gAsnAlaThrValTrpGlyAlaLysGlnIleHisLeuPheIleIleSerIleProG 1238785 : AAACGCTACGGTCTGGGGGGCTAAGCAAATTCACCTGTTCATCATCAGTATACCTG : 1238729 278 : lyGlnValIleThrAspHisSerPheGluLeuThrAsnAspIle : 291 ||||||||:!!! !||||||!!! ! ||||||:!!||||||!!: lyGlnValLeuIleAspHisCysValGluLeuSerAsnAspMet 1238728 : GACAGGTGCTTATAGATCATTGTGTGGAGCTGTCAAACGACATG : 1238685 vulgar: gi|815916412|ref|XP_012243371.1| 239 291 . KQ414851.1 1238840 1238684 - 111 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1238685 1238840 111 - . gene_id 10 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1238685 1238840 . - . KQ414851.1 exonerate:protein2genome:local exon 1238685 1238840 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1238685 1238840 111 - . alignment_id 10 ; Query gi|815916412|ref|XP_012243371.1| ; Align 1238841 240 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927462|ref|XP_012248265.1| PREDICTED: odorant receptor 49a-like, partial [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 421 Query range: 13 -> 289 Target range: 1226074 -> 1222600 14 : IleAlaLeuTyrGluSerLeuTyrThrLysAsnLeuAspValMetLeuGluCysLe : 32 :!! !:!!|||! !:!!! ! ! !|||:!!!!!|||! !:!::!!:!! || LeuLysIleTyrValAlaGlnArgGluLysAspPheAspGlyValMetGlnValLe 1226074 : CTAAAGATCTACGTGGCCCAGCGCGAGAAGGATTTCGATGGGGTCATGCAGGTACT : 1226020 33 : uProHisLeuAlaAlaIleValThrSerPheValLysIleMetAsnValTyrLeuA : 51 ||||:!!:!! !||| ..! !:!!.!!||||||:!!||||||:!! !:!!| uProAsnIleIleAlaGlnThrGlyAlaLeuValLysValMetAsnIleArgIleA 1226019 : CCCGAACATTATCGCCCAGACTGGCGCCCTCGTTAAAGTAATGAACATCCGTATCA : 1225963 52 : snArgGluAsn >>>> Target Intron 1 >>>> PheArgLysLeuPheA : 60 ||!:!! ||| 80 bp |||||||||||||||| snLysAlaAsn++ ++PheArgLysLeuPheA 1225962 : ACAAAGCgaacgt.........................agtttcgaaaattattcg : 1225856 61 : spSerIleThrLysGluTrpGlnGlnLeuLysLeuSerGlnAspLeuTyrIleLeu : 78 || !!!:..!::!..!|||:!!! !|||:!! !!.!.!.!!::!! ! |||||| spLeuMetValArgArgTrpLysLeuLeuGluAlaLysAspGluIleGluIleLeu 1225855 : atcTCATGGTACGAAGATGGAAACTGTTGGAAGCAAAGGACGAAATAGAGATACTG : 1225802 79 : GluGluValThrIleArgGlySerLysMetAlaLysLeuTyrArg{A} >>>> T : 94 :!!:!! !|||! !!:!|||! !!:!:!: !:!!||||||!:!{:} LysLysTyrThrSerLysGlyMetArgLeuArgGluLeuTyrLys{A}++ 1225801 : AAGAAATACACCAGTAAAGGGATGAGACTTAGAGAACTGTACAAA{G}gt...... : 1225751 95 : arget Intron 2 >>>> {sn}ThrLeuMetValPheMetValLeuPheLeuL : 105 1463 bp {!!}:!!||| !:!! !!:!!:!!:!!!:!:!! ++{sp}SerLeuTrpIleValLeuLeuValTyrMetS 1225750 : ...................ag{ac}tCGTTGTGGATAGTTCTGTTAGTATATATGA : 1224258 106 : euValProLeuIleSerProMetMetAspIleLeuLeuProLeuAsnGluThrArg : 123 ! !!|||||||||!:!|||:!::!!|||:!!:!! !|||||||||||||||||| erPheProLeuIleAsnProValLeuAspValValAlaProLeuAsnGluThrArg 1224257 : GCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGA : 1224204 124 : ProArgGlnGlnLeuLeuAsnValAsnTyrValLeuPheAspSerHisAsnTyrPh : 142 ||||||::!! |||||| |||!:!|||:!!!!!.!.|||..!:!!.!.:!!|| ProArgArgLeuLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPh 1224203 : CCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTT : 1224147 143 : ePheCysValTyrLeuGlnLeuSerTrpAlaAlaIleValValSerIleSerIleV : 161 |!:! !!||| !!!!!!!.|||! ! ::!!.!||| ! !.!!!!:! !|||: eTyrSerValAsnPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleI 1224146 : TTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAA : 1224090 162 : alThrValAspSerLeuLeuMetLeuIleValHisHisAsnSerGlyLeuPheIle : 179 !!.!!||||||! !|||! !!!: !|||:!! !||| !!!!||||||||| ! leAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAla 1224089 : TCGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCA : 1224036 180 : ValCys-GlyHisGlnIleGlnLysLysThrArgHisLeuAsnSerPheThrAsnG : 198 ||||||#||| ! ! !.!.::!|||! ! ! !:!!! !!:!||| !!... ValCys#GlyLysTyrAspAsnArgLysLys***CysIleIleAsnPheLeuThrA 1224035 : GTGTGTGGGTAAATATGATAACCGGAAGAAATAATGCATCATTAATTTTTTGACAA : 1223978 199 : luAlaMetThrGluHisTyrThrTyrLysGluIleArgAsnCysValIleMetHis : 216 .!..! ! ! ||||||||| ::: |||||| :::... rgCysAlaAspTyrLeuTyrThrTyrIleTyrMetCysValCysValCysValGln 1223977 : GGTGTGCTGATTAtctttatacatatatatatatgtgtgtgtgtgtgtgtgtacag : 1223924 217 : ThrLysAlaIle{A} >>>> Target Intron 3 >>>> {sp}PheTyrAs : 224 |||..! ! !{ } 446 bp { }!:!! !.! ThrSerAsnSer{A}++ +-{rg}TyrCysGl 1223923 : aCATCGAATTCA{A}gt.........................aa{GA}TACTGCCA : 1223454 225 : pIleLeuAspGluAsnAsnArgLeuSerTyrMetIleGlnIleGlyLeuThrMetI : 243 .||||||!!:..!!:!!:!!:!! !! !|||:!!||||||:!!||||||!:!:!!. nIleLeuGluArgSerSerGlnHisMetTyrLeuIleGlnValGlyLeuSerValP 1223453 : GATTCTGGAAAGAAGTAGCCAACATATGTACCTGATTCAAGTAGGATTAAGCGTGT : 1223397 244 : leGlyIleThrThrThrAlaValGln >>>> Target Intron 4 >>>> T : 252 !! !|||!:!..!||||||!.! ! 656 bp heIleIleSerValThrAlaAlaAla++ ++C 1223396 : TCATCATCAGCGTGACGGCTGCCGCAgt.........................agT : 1222714 253 : hrValIleAsnLeuAspArgProGlyIleSerIleLysSerAlaValLeuCysGly : 270 !:!!!!:|||:!!|||||||||! ! ! !|||!:! !|||:!!!!! !! ! ysIleMetAsnIleAspArgProAspGluLeuIleArgLeuAlaMetPheValVal 1222713 : GCATTATGAACATCGACCGACCTGACGAACTCATCAGGCTTGCGATGTTTGTCGTA : 1222660 271 : AlaAsnGlnPheHisLeuPheMetLeuSerLeuProGlyGlnIleLeuValAspHi : 289 |||...:::|||||||||...!!:||||||||||||||||||!!:|||:!!||||| AlaGlnLysPheHisLeuLeuIleLeuSerLeuProGlyGlnMetLeuLeuAspHi 1222659 : GctcagaaatttcatttgctcATCCTTAGTTTACCTGGGCAAATGTTGTTAGATCA : 1222603 290 : s : 289 | s 1222602 : T : 1222601 vulgar: gi|815927462|ref|XP_012248265.1| 13 289 . KQ414851.1 1226074 1222600 - 421 M 41 123 5 0 2 I 0 76 3 0 2 M 39 117 S 0 1 5 0 2 I 0 1459 3 0 2 S 1 2 M 87 261 F 0 1 M 39 117 S 0 1 5 0 2 I 0 442 3 0 2 S 1 2 M 30 90 5 0 2 I 0 652 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222601 1226074 421 - . gene_id 1 ; sequence gi|815927462|ref|XP_012248265.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1225952 1226074 . - . KQ414851.1 exonerate:protein2genome:local exon 1225952 1226074 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1225950 1225951 . - . intron_id 1 ; splice_site "gt" KQ414851.1 exonerate:protein2genome:local intron 1225872 1225951 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1225872 1225873 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1225754 1225871 . - . KQ414851.1 exonerate:protein2genome:local exon 1225754 1225871 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1225752 1225753 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1224291 1225753 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1224291 1224292 . - . intron_id 1 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1223909 1224290 . - . KQ414851.1 exonerate:protein2genome:local exon 1223909 1224290 . - . insertions 0 ; deletions 0 ; frameshifts 1 KQ414851.1 exonerate:protein2genome:local splice5 1223907 1223908 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1223463 1223908 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1223463 1223464 . - . intron_id 2 ; splice_site "AA" KQ414851.1 exonerate:protein2genome:local cds 1223371 1223462 . - . KQ414851.1 exonerate:protein2genome:local exon 1223371 1223462 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1223369 1223370 . - . intron_id 4 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222715 1223370 . - . intron_id 4 KQ414851.1 exonerate:protein2genome:local splice3 1222715 1222716 . - . intron_id 3 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222601 1222714 . - . KQ414851.1 exonerate:protein2genome:local exon 1222601 1222714 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222601 1226074 421 - . alignment_id 1 ; Query gi|815927462|ref|XP_012248265.1| ; Align 1226075 14 123 ; Align 1225872 55 117 ; Align 1224289 95 261 ; Align 1224027 182 117 ; Align 1223461 222 90 ; Align 1222715 252 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927462|ref|XP_012248265.1| PREDICTED: odorant receptor 49a-like, partial [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 411 Query range: 54 -> 182 Target range: 1229734 -> 1229224 55 : PheArgLysLeuPheAspSerIleThrLysGluTrpGlnGlnLeuLysLeuSerGl : 73 |||||||||::::::::: !:!:|||! !||||||:!!||||||!:!:!!!:!.! PheArgLysMetTyrAsnLeuValThrIleGluTrpGluGlnLeuArgMetAsnAs 1229734 : tttagaaaaatgtataatctCGTGACAATAGAGTGGGAGCAGTTGAGGATGAACGA : 1229680 74 : nAspLeuTyrIleLeuGluGluValThrIleArgGlySerLysMetAlaLysLeuT : 92 .!!::!!:!!:!:|||:!!|||||||||:!:!:!|||||||||:!!|||:!!|||| pGluValHisValLeuGlnGluValThrLeuLysGlySerLysLeuAlaGlnLeuT 1229679 : CGAGGTGCATGTGCTTCAAGAGGTTACTTTGAAAGGTAGTAAATTGGCCCAATTAT : 1229623 93 : yrArg{A} >>>> Target Intron 1 >>>> {sn}ThrLeuMetValPhe : 99 |||||{|} 126 bp {||}.!!|||:!: !! yrArg{A}++ ++{sn}AlaLeuLeuPheAla 1229622 : ACAGA{A}gt.........................ag{AT}GCTTTACTCTTCGCA : 1229476 100 : MetValLeuPheLeuLeuValProLeuIleSerProMetMetAspIleLeuLeuPr : 118 ||| !:!!||||||||||||||||||.!!.!!||| :!!||||||:!!||||| MetCysValPheLeuLeuValProLeuPheGlyProAlaLeuAspIleValLeuPr 1229475 : ATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCGTCCTTCC : 1229419 119 : oLeuAsnGluThrArgProArgGlnGlnLeuLeuAsnValAsnTyrValLeuPheA : 137 |! !|||||||||||||||||||||||||||!!!!..|||||||||:!!:!!|||| oSerAsnGluThrArgProArgGlnGlnLeuPheArgValAsnTyrIleIlePheA 1229418 : ATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAATTTTCG : 1229362 138 : spSerHisAsnTyrPhePheCysValTyrLeuGlnLeuSerTrpAlaAlaIleVal : 155 ||..! :!!|||||||||! !||||||:!!||||||! !|||..!.!!|||||| spGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPheTrpCysThrIleVal 1229361 : ACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACAATCGTT : 1229308 156 : ValSerIleSerIleValThrValAspSerLeuLeuMetLeuIleValHisHisAs : 174 :!! !!!::!!|||:!!|||||||||||||||! !|||:!!|||:!!:!!||| LeuValMetAlaIleIleThrValAspSerLeuTyrMetIleIleIleTyrHisAl 1229307 : CTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGATCATAATTTACCATGC : 1229251 175 : nSerGlyLeuPheIleValCysGly : 182 !||||||:!!||| !:!!|||||| aSerGlyMetPheAlaIleCysGly 1229250 : CAGCGGAATGTTCGCTATATGCGGG : 1229225 vulgar: gi|815927462|ref|XP_012248265.1| 54 182 . KQ414851.1 1229734 1229224 - 411 M 39 117 S 0 1 5 0 2 I 0 122 3 0 2 S 1 2 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229734 411 - . gene_id 2 ; sequence gi|815927462|ref|XP_012248265.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1229617 1229734 . - . KQ414851.1 exonerate:protein2genome:local exon 1229617 1229734 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1229615 1229616 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1229491 1229616 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1229491 1229492 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1229225 1229490 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229490 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229734 411 - . alignment_id 2 ; Query gi|815927462|ref|XP_012248265.1| ; Align 1229735 55 117 ; Align 1229489 95 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927462|ref|XP_012248265.1| PREDICTED: odorant receptor 49a-like, partial [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 386 Query range: 221 -> 348 Target range: 1233759 -> 1233228 222 : PheTyrAspIleLeuAspGluAsnAsnArgLeuSerTyrMetIleGlnIleGlyLe : 240 |||||||||||||||:!!|||!:!!:!||| !||||||:!!||||||:!!||||| PheTyrAspIleLeuAsnGluSerSerArgAsnSerTyrLeuIleGlnValGlyLe 1233759 : TTTTACGATATTCTAAACGAGAGCAGTCGAAATAGCTACTTGATTCAGGTTGGATT : 1233705 241 : uThrMetIleGlyIleThrThrThrAlaValGln >>>> Target Intron 1 : 252 |!.!|||!!:||||||!:!..!|||||||||||| 80 bp uAsnMetMetGlyIleSerValThrAlaValGln+- 1233704 : GAACATGATGGGCATTAGCGTGACCGCTGTCCAGgc.................... : 1233667 253 : >>>> ThrValIleAsnLeuAspArgProGlyIleSerIleLysSerAlaValL : 268 ||||||:!!!..||||||||||||!.! !:!!:!!!:!!!!||||||! ++ThrValLeuThrLeuAspArgProAlaGluAlaLeuArgCysAlaValP 1233666 : .....agACAGTCCTCACACTGGACAGGCCGGCAGAAGCTCTTAGATGTGCTGTGT : 1233541 269 : euCysGlyAlaAsnGlnPheHisLeuPheMetLeuSerLeuProGlyGlnIleLeu : 286 !! !! !|||.!.|||||||||||||||!!::!!|||||||||||||||! !||| heLeuValAlaGluGlnPheHisLeuPheIleIleSerLeuProGlyGlnThrLeu 1233540 : TCCTTGTAGCGGAGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACACTC : 1233487 287 : ValAspHisCysThrGluLeuThrLysGln{Le} >>>> Target Intron 2 : 297 |||||||||||||||:!!|||:!!|||.!.{:!} 70 bp ValAspHisCysThrLysLeuSerLysAsp{Il}++ 1233486 : GTGGATCATTGTACGAAACTATCGAAGGAT{AT}gt.................... : 1233450 298 : >>>> {u}TyrGlySerThrTrpTyrGlyValProValLysThrGlnLysMetL : 313 {!}|||..!|||||||||||| !||||||!.!||| !|||::!:!:: ++{e}TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValI 1233449 : .....ag{A}TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAA : 1233336 314 : euTyrMetMetGlnIleArgThrArgSerProCysThrLeuThrAlaCysGlyLeu : 331 !!|||! !||||||||||||.!!! !!.!||||||..!||||||||| !!|||||| leTyrThrMetGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeu 1233335 : TTTACACGATGCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTG : 1233282 332 : TyrGlnMetAsnIleGluAsnPheGlyThrPheAsnLysLeuPheGlnLeu : 348 |||:!!||||||!!:|||||||||!.!!.! !!..! ! :!! ! |||:!! TyrGluMetAsnMetGluAsnPheAlaAsnValArgTyrIleValGlnIle 1233281 : TATGAAATGAACATGGAGAACTTTGCAAACGTTCGTTACATTGTACAGATA : 1233229 vulgar: gi|815927462|ref|XP_012248265.1| 221 348 . KQ414851.1 1233759 1233228 - 386 M 30 90 5 0 2 I 0 76 3 0 2 M 45 135 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233229 1233759 386 - . gene_id 3 ; sequence gi|815927462|ref|XP_012248265.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233670 1233759 . - . KQ414851.1 exonerate:protein2genome:local exon 1233670 1233759 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233668 1233669 . - . intron_id 1 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1233590 1233669 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233590 1233591 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233453 1233589 . - . KQ414851.1 exonerate:protein2genome:local exon 1233453 1233589 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233451 1233452 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233383 1233452 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1233383 1233384 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233229 1233382 . - . KQ414851.1 exonerate:protein2genome:local exon 1233229 1233382 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233229 1233759 386 - . alignment_id 3 ; Query gi|815927462|ref|XP_012248265.1| ; Align 1233760 222 90 ; Align 1233590 252 135 ; Align 1233382 298 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927462|ref|XP_012248265.1| PREDICTED: odorant receptor 49a-like, partial [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 318 Query range: 90 -> 192 Target range: 1234335 -> 1234029 91 : LeuTyrArgAsnThrLeuMetValPheMetValLeuPheLeuLeuValProLeuIl : 109 !!!!:! !:!!||||||:!! !|||||||||:!!||||||||||||||||||:! PhePheSerAspThrLeuLeuSerPheMetValValPheLeuLeuValProLeuVa 1234335 : TTCTTCTCAGATACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGT : 1234281 110 : eSerProMetMetAspIleLeuLeuProLeuAsnGluThrArgProArgGlnGlnL : 128 !! !|||.!.:!!|||:!!:!!||||||||||||||||||||||||||||||||| lPheProPheLeuAspValValLeuProLeuAsnGluThrArgProArgGlnGlnG 1234280 : TTTTCCATTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAG : 1234224 129 : euLeuAsnValAsnTyrValLeuPheAspSerHisAsnTyrPhePheCysValTyr : 146 !!!!!..|||||||||:!!! !||||||..! :!!||||||||| !!|||||| lyPheArgValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyr 1234223 : GATTCAGAGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTAC : 1234170 147 : LeuGlnLeuSerTrpAlaAlaIleValValSerIleSerIleValThrValAspSe : 165 !!!||||||:!!|||!.!|||:!!|||||| !!!:! !|||:!!||||||||||| PheGlnLeuAlaTrpGlyAlaValValValValMetIleIleIleThrValAspSe 1234169 : TTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTC : 1234113 166 : rLeuLeuMetLeuIleValHisHisAsnSerGlyLeuPheIleValCysGlyHisG : 184 ||||! !|||:!!|||:!!|||||| !||||||:!!||| !||||||||| ! . rLeuTyrMetIleIleIleHisHisAlaSerGlyMetPheAlaValCysGly***M 1234112 : GTTGTACATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTGTGCGGGTAAA : 1234056 185 : lnIleGlnLysLysThrArgHisLeu : 192 .! !!:! ! :!! !!:!|||||| et***ArgTyrGlnGlyLysHisLeu 1234055 : TGTAACGATATCAAGGAAAACATTTA : 1234030 vulgar: gi|815927462|ref|XP_012248265.1| 90 192 . KQ414851.1 1234335 1234029 - 318 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234030 1234335 318 - . gene_id 4 ; sequence gi|815927462|ref|XP_012248265.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234030 1234335 . - . KQ414851.1 exonerate:protein2genome:local exon 1234030 1234335 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234030 1234335 318 - . alignment_id 4 ; Query gi|815927462|ref|XP_012248265.1| ; Align 1234336 91 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927462|ref|XP_012248265.1| PREDICTED: odorant receptor 49a-like, partial [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 294 Query range: 53 -> 182 Target range: 1245057 -> 1243599 54 : AsnPheArgLysLeuPheAspSerIleThrLysGluTrpGlnGlnLeuLysLeuSe : 72 .!.||| !||||||!:!|||! !!!:! !|||||||||.!...!|||!..|||.. GlnPheAspLysLeuTyrAspIleMetLysLysGluTrpAspMetLeuSerLeuAs 1245057 : CAGTTCGACAAGTTGTACGATATCATGAAGAAAGAATGGGATATGTTAAGTCTCGA : 1245003 73 : rGlnAspLeuTyrIleLeuGluGluValThrIleArgGlySerLysMetAlaLysL : 91 !:!!.!. ! ||||||||||||:!!|||! !||||||||||||:!:.!!!!.: pGluGln---GlnIleLeuGluGluIleThrLysArgGlySerLysLeuThrAsnI 1245002 : CGAGCAG---CAGATTCTCGAAGAAATCACTAAACGAGGAAGTAAATTAACCAATA : 1244949 92 : euTyrArg{A} >>>> Target Intron 1 >>>> {sn}ThrLeuMetVal : 98 !!||||||{!} 1077 bp {:!}||||||.!. ! leTyrArg{S}++ ++{er}ThrLeuPheTyr 1244948 : TATACAGA{A}gt.........................ag{GT}ACTTTGTTCTAT : 1243851 99 : PheMetValLeuPheLeuLeuValProLeuIleSerProMetMetAspIleLeuLe : 117 ||| !:!!:!!|||:!!||| !!||||||||| !!|||!!::!!|||:!!:!!! PheSerIleIlePheValLeuPheProLeuIleProProIleLeuAspValValSe 1243850 : TTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTC : 1243794 118 : uProLeuAsnGluThrArgProArgGlnGlnLeuLeuAsnValAsnTyrValLeuP : 136 !|||||||||||||||||| !!||| !:::::::::...:::...||| |||| rProLeuAsnGluThrArgSerArgIleGluValIleLysLeuGlnTyr---LeuP 1243793 : ACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgcaatac---cTGT : 1243740 137 : heAspSerHisAsnTyrPhePheCysValTyrLeuGlnLeuSerTrpAlaAlaIle : 154 |||||! ...... |||::: :::|||:!! ! !.!!|||..!:!!.!! heAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPhe 1243739 : TCGACAtggagaagaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTC : 1243686 155 : ValValSerIleSerIleValThrValAspSerLeuLeuMetLeuIleValHisHi : 173 :!!..!! !!!: !|||:!!|||:!!|||:!!|||! !:!!:!!|||:!!||||| MetThrMetMetValIleIleThrIleAspAlaLeuTyrValValIleIleHisHi 1243685 : ATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCA : 1243629 174 : sAsnSerGlyLeuPheIleValCysGly : 182 |!..!!!||||||||| !||||||||| sThrCysGlyLeuPheAlaValCysGly 1243628 : CACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: gi|815927462|ref|XP_012248265.1| 53 182 . KQ414851.1 1245057 1243599 - 294 M 21 63 G 1 0 M 18 54 S 0 1 5 0 2 I 0 1073 3 0 2 S 1 2 M 39 117 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1245057 294 - . gene_id 5 ; sequence gi|815927462|ref|XP_012248265.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1244940 1245057 . - . KQ414851.1 exonerate:protein2genome:local exon 1244940 1245057 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local splice5 1244938 1244939 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243863 1244939 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1243863 1243864 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1243600 1243862 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243862 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1245057 294 - . alignment_id 5 ; Query gi|815927462|ref|XP_012248265.1| ; Align 1245058 54 63 ; Align 1244995 76 54 ; Align 1243861 95 117 ; Align 1243744 135 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927462|ref|XP_012248265.1| PREDICTED: odorant receptor 49a-like, partial [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 291 Query range: 54 -> 182 Target range: 1240295 -> 1239821 55 : PheArgLysLeuPheAspSerIleThrLysGluTrpGlnGlnLeuLysLeuSerGl : 73 |||:::...||| |||:!:..!:!!:!!|||:!!:!!|||!:!:!!|||.! PheLysAsnLeuCysIleSerValValGluLysTrpGluGluLeuArgIleSerAs 1240295 : tttaaaaatttatgcattTCTGTGGTGGAAAAATGGGAAGAGTTGAGGATCAGTAA : 1240241 74 : nAspLeuTyrIleLeuGluGluValThrIleArgGlySerLysMetAlaLysLeuT : 92 .!!:||| !:!:||||||||||||||| !!:!|||||||||......:::|||| nGluLeuSerValLeuGluGluValThrAlaGlnGlySerLysPheValGlnLeuT 1240240 : CGAGTTAAGCGTGCTGGAAGAAGTTACCGCCCAAGGGAGcaaatttgtacaattgt : 1240184 93 : yrArg{A} >>>> Target Intron 1 >>>> {sn}ThrLeuMetValPhe : 99 |||||{!} 90 bp { !}..!|||.!. yrArg{I}+- ++{le}ValLeuPheSerVal 1240183 : aCAGA{A}gc.........................ag{TC}GTTTTATTTTCcgtt : 1240073 100 : MetValLeuPheLeuLeuValProLeuIleSerProMetMetAspIleLeuLeuPr : 118 ::: :::||||||:!!||||||:::... |||::::::||||||||| !|| LeuPheIlePheLeuValValProIlePheProProLeuLeuAspIleLeuLysPr 1240072 : ttgttcatttttctggTGGTTCcgatttttcctcctcttctggACATTTTAAAACC : 1240016 119 : oLeuAsnGluThrArgProArgGlnGlnLeuLeuAsnValAsnTyrValLeuPheA : 137 |||||||||||||||| !!||||||::::::......|||||||||:!!:!!.!!| oLeuAsnGluThrArgAlaArgGlnLysIlePheLysValAsnTyrLeuIleIleA 1240015 : TTTAAACGAAACCCGAGCACgccagaaaatattcaaagttaaTTACCTGATCATTG : 1239959 138 : spSerHisAsnTyrPhePheCysValTyrLeuGlnLeuSerTrpAlaAlaIleVal : 155 ||!!! !!.!. ! !.!. !..!|||!!!!!.|||||||||.!!.!!|||..! spArgAspGluGlnAlaLeuIleThrTyrPheHisLeuSerTrpThrThrIleThr 1239958 : ACAGGGATGAACAAGCTCTGATCACATATTTTCACTTGTCTTGGACAACTATCACT : 1239905 156 : ValSerIleSerIleValThrValAspSerLeuLeuMetLeuIleValHisHisAs : 174 :!!.!!||||||:!::!!!:! !!!:! !:!!! !:!:|||:!!:!!||||||!. LeuGlyIleSerValLeuSerSerGluLeuIleTyrValLeuLeuIleHisHisTh 1239904 : CTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGTCCTTCTTATTCATCATAC : 1239848 175 : nSerGlyLeuPheIleValCysGly : 182 !|||||||||||| !|||..!||| rSerGlyLeuPheAlaValAlaGly 1239847 : CAGCGGTCTGTTTGCTGTGGCTGgg : 1239822 vulgar: gi|815927462|ref|XP_012248265.1| 54 182 . KQ414851.1 1240295 1239821 - 291 M 39 117 S 0 1 5 0 2 I 0 86 3 0 2 S 1 2 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240295 291 - . gene_id 6 ; sequence gi|815927462|ref|XP_012248265.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1240178 1240295 . - . KQ414851.1 exonerate:protein2genome:local exon 1240178 1240295 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1240176 1240177 . - . intron_id 1 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1240088 1240177 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1240088 1240089 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1239822 1240087 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240087 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240295 291 - . alignment_id 6 ; Query gi|815927462|ref|XP_012248265.1| ; Align 1240296 55 117 ; Align 1240086 95 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927462|ref|XP_012248265.1| PREDICTED: odorant receptor 49a-like, partial [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 254 Query range: 248 -> 348 Target range: 1228764 -> 1228392 249 : AlaValGlnThrValIleAsnLeuAspArgProGlyIleSerIleLysSerAlaVa : 267 :!! !!|||! !:!!:!! !||||||||||||.!! !:!!|||!:!! !:!!|| SerPheGlnIleMetLeuAlaLeuAspArgProSerGluAlaIleArgTyrSerVa 1228764 : TCTTTCCAGATAATGCTCGCCCTGGATAGACCGAGCGAAGCTATTAGATATTCTGT : 1228710 268 : lLeuCysGlyAlaAsnGlnPheHisLeuPheMetLeuSerLeuProGlyGlnIleL : 286 |:!! !|||!.! |||||||||||||||!!::!!|||||||||||||||! !| lValLeuGlyGlyAlaGlnPheHisLeuPheIleIleSerLeuProGlyGlnThrL 1228709 : GGTTCTTGGAGGTGCGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACAC : 1228653 287 : euValAspHisCysThrGluLeuThrLysGlnLeuTyr >>>> Target Intr : 299 ||||||||||||||||| !||||||!!..!.:!!||| 72 bp euValAspHisCysThrMetLeuThrAsnAspMetTyr++ 1228652 : TCGTGGATCATTGTACCATGCTAACGAACGATATGTACgt................ : 1228612 300 : on 1 >>>> GlySerThrTrpTyrGlyValProValLysThrGlnLysMetLeu : 313 ..!|||||||||||| !||| !!!.!||| !|||::!:!::!! +-SerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIle 1228611 : .........acTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATT : 1228500 314 : TyrMetMetGlnIleArgThrArgSerProCysThrLeuThrAlaCysGlyLeuTy : 332 ||||||||||||||||||.!!! !!.!||||||! !||||||||| !!|||||||| TyrMetMetGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTy 1228499 : TACATGATGCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTA : 1228443 333 : rGlnMetAsnIleGluAsnPheGlyThrPheAsnLysLeuPheGlnLeu : 348 |:!!||||||!!:|||||||||!.!!.! !!..!!!.:!! ! |||:!! rGluMetAsnMetGluAsnPheAlaAsnValArgAsnIleValGlnIle 1228442 : CGAAATGAACATGGAGAACTTTGCAAACGTTCGTAACATTGTACAGATA : 1228393 vulgar: gi|815927462|ref|XP_012248265.1| 248 348 . KQ414851.1 1228764 1228392 - 254 M 50 150 5 0 2 I 0 68 3 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228393 1228764 254 - . gene_id 7 ; sequence gi|815927462|ref|XP_012248265.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1228615 1228764 . - . KQ414851.1 exonerate:protein2genome:local exon 1228615 1228764 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228613 1228614 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1228543 1228614 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1228543 1228544 . - . intron_id 0 ; splice_site "AC" KQ414851.1 exonerate:protein2genome:local cds 1228393 1228542 . - . KQ414851.1 exonerate:protein2genome:local exon 1228393 1228542 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228393 1228764 254 - . alignment_id 7 ; Query gi|815927462|ref|XP_012248265.1| ; Align 1228765 249 150 ; Align 1228543 299 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927462|ref|XP_012248265.1| PREDICTED: odorant receptor 49a-like, partial [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 241 Query range: 444 -> 518 Target range: 1233762 -> 1233460 445 : ArgPheSerAspIleLeuLysGluSerSerArgGlySerTyrLeuIleGlnValGl : 463 ||||||! !|||||||||!!.||||||||||||..!|||||||||||||||||||| ArgPheTyrAspIleLeuAsnGluSerSerArgAsnSerTyrLeuIleGlnValGl 1233762 : AGGTTTTACGATATTCTAAACGAGAGCAGTCGAAATAGCTACTTGATTCAGGTTGG : 1233708 464 : yLeuAsnMetLeuSerIleSerAlaThrAlaValGln >>>> Target Intro : 476 ||||||||||:!!.!!||||||!.!|||||||||||| 80 bp yLeuAsnMetMetGlyIleSerValThrAlaValGln+- 1233707 : ATTGAACATGATGGGCATTAGCGTGACCGCTGTCCAGgc................. : 1233667 477 : n 1 >>>> ThrValIleAsnLeuAspArgProGluGluAlaIleArgSerAlaV : 491 ||||||:!!!..||||||||||||! !||||||:!!|||!!!|||| ++ThrValLeuThrLeuAspArgProAlaGluAlaLeuArgCysAlaV 1233666 : ........agACAGTCCTCACACTGGACAGGCCGGCAGAAGCTCTTAGATGTGCTG : 1233544 492 : alPheCysGlyAlaCysLeuPheHisLeuLeuLeuLeuSerLeuProGlyGlnVal : 509 ||||| !! !||| ! !|||||||||!!!:!!:!!|||||||||||||||..! alPheLeuValAlaGluGlnPheHisLeuPheIleIleSerLeuProGlyGlnThr 1233543 : TGTTCCTTGTAGCGGAGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACA : 1233490 510 : LeuLeuAspHisCysSerAspLeuAla : 518 |||:!!|||||||||!!! ! |||:!! LeuValAspHisCysThrLysLeuSer 1233489 : CTCGTGGATCATTGTACGAAACTATCG : 1233461 vulgar: gi|815927462|ref|XP_012248265.1| 444 518 . KQ414851.1 1233762 1233460 - 241 M 31 93 5 0 2 I 0 76 3 0 2 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233461 1233762 241 - . gene_id 8 ; sequence gi|815927462|ref|XP_012248265.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233670 1233762 . - . KQ414851.1 exonerate:protein2genome:local exon 1233670 1233762 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233668 1233669 . - . intron_id 1 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1233590 1233669 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233590 1233591 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233461 1233589 . - . KQ414851.1 exonerate:protein2genome:local exon 1233461 1233589 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233461 1233762 241 - . alignment_id 8 ; Query gi|815927462|ref|XP_012248265.1| ; Align 1233763 445 93 ; Align 1233590 476 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927462|ref|XP_012248265.1| PREDICTED: odorant receptor 49a-like, partial [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 232 Query range: 444 -> 520 Target range: 1228927 -> 1228620 445 : ArgPheSerAspIleLeuLysGluSerSerArgGlySerTyrLeuIleGlnValGl : 463 ||||||! !|||||||||!!.||||||||||||..!|||||||||:!!|||||||| ArgPheTyrAspIleLeuAsnGluSerSerArgAsnSerTyrLeuLeuGlnValGl 1228927 : AGGTTTTACGATATTCTAAACGAGAGCAGTCGAAACAGCTACTTGCTTCAGGTTGG : 1228873 464 : yLeuAsnMetLeuSerIleSerAlaThrAlaValGln >>>> Target Intro : 476 ||||!:!|||:!!|||||||||!.!|||||||||||| 79 bp yLeuSerMetMetSerIleSerValThrAlaValGln+- 1228872 : ATTGAGCATGATGAGCATCAGCGTGACTGCTGTGCAGgc................. : 1228832 477 : n 1 >>>> ThrValIleAsnLeuAspArgProGluGluAlaIleArgSerAlaV : 491 ! !:!!:!! !||||||||||||...||||||||||||! !:!!| ++IleMetLeuAlaLeuAspArgProSerGluAlaIleArgTyrSerV 1228831 : ........agATAATGCTCGCCCTGGATAGACCGAGCGAAGCTATTAGATATTCTG : 1228710 492 : alPheCysGlyAlaCysLeuPheHisLeuLeuLeuLeuSerLeuProGlyGlnVal : 509 || !! !|||!.!...! !|||||||||!!!:!!:!!|||||||||||||||..! alValLeuGlyGlyAlaGlnPheHisLeuPheIleIleSerLeuProGlyGlnThr 1228709 : TGGTTCTTGGAGGTGCGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACA : 1228656 510 : LeuLeuAspHisCysSerAspLeuAlaAspAsn : 520 |||:!!|||||||||!!! |||.!!:!!:!! LeuValAspHisCysThrMetLeuThrAsnAsp 1228655 : CTCGTGGATCATTGTACCATGCTAACGAACGAT : 1228621 vulgar: gi|815927462|ref|XP_012248265.1| 444 520 . KQ414851.1 1228927 1228620 - 232 M 31 93 5 0 2 I 0 75 3 0 2 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228621 1228927 232 - . gene_id 9 ; sequence gi|815927462|ref|XP_012248265.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1228835 1228927 . - . KQ414851.1 exonerate:protein2genome:local exon 1228835 1228927 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228833 1228834 . - . intron_id 1 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1228756 1228834 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1228756 1228757 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228621 1228755 . - . KQ414851.1 exonerate:protein2genome:local exon 1228621 1228755 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228621 1228927 232 - . alignment_id 9 ; Query gi|815927462|ref|XP_012248265.1| ; Align 1228928 445 93 ; Align 1228756 476 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927462|ref|XP_012248265.1| PREDICTED: odorant receptor 49a-like, partial [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 226 Query range: 383 -> 519 Target range: 1224093 -> 1222582 384 : IleIleGlyAlaAspTrpLeuTyrMetLeuIleIleHisHisSerSerGlyLeuPh : 402 ||||||!.!!.!||| !||||||!!: !|||||| !||| !!!!|||||||| IleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPh 1224093 : ATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTT : 1224039 403 : eAlaValCys{Gl} >>>> Target Intron 1 >>>> {y}HisArgValG : 410 ||||||||||{||} 450 bp {|} ! !. eAlaValCys{Gl}++ +-{y}ThrPheArgS 1224038 : CGCAGTGTGT{GG}gt.........................aa{A}ACGTTCAGAT : 1223565 411 : lnLysAlaThrValAsnProAsnTyrPheThrGlyAspAlaIleSerGluAsnTyr : 428 .!||| ! !|||||| !!..! !.!.! ! !! !!.!:!!||||||||| erLysMetAspValAsnTrpThrSerLeuArgArgArgValLeuSerGluAsn--- 1223564 : CAAAAATGGACGTAAATTGGACATCTCTAAGACGTCGTGTGTTATCTGAGAAC--- : 1223511 429 : ThrTyrGluLysIleArgAsnCysAlaIleMetHisAsnGluAlaIleArgPheSe : 447 !:! !!: ! :!:! !::: ! ...::: ... !|||!:!!! SerMetAspHisLeuThrSerIleAsnSerPheTyrTyrTyrValSerArgTyrCy 1223510 : AGTATGGATCATCTGACATCAATTAActcattttattattacgttTCAAGATACTG : 1223457 448 : rAspIleLeuLysGluSerSerArgGlySerTyrLeuIleGlnValGlyLeuAsnM : 466 !.!.||||||:!!..!||||||!:! !! !|||||||||||||||||||||!:!: sGlnIleLeuGluArgSerSerGlnHisMetTyrLeuIleGlnValGlyLeuSerV 1223456 : CCAGATTCTGGAAAGAAGTAGCCAACATATGTACCTGATTCAAGTAGGATTAAGCG : 1223400 467 : etLeuSerIleSerAlaThrAlaValGln >>>> Target Intron 2 >>>> : 476 !!!!!! !||||||!.!||||||!.! ! 656 bp alPheIleIleSerValThrAlaAlaAla++ 1223399 : TGTTCATCATCAGCGTGACGGCTGCCGCAgt......................... : 1223368 477 : ThrValIleAsnLeuAspArgProGluGluAlaIleArgSerAlaValPheCys : 493 !:!!!!:|||:!!|||||||||!!:||| !|||||| !|||:!!||| ! ++CysIleMetAsnIleAspArgProAspGluLeuIleArgLeuAlaMetPheVal 1223367 : agTGCATTATGAACATCGACCGACCTGACGAACTCATCAGGCTTGCGATGTTTGTC : 1222663 494 : GlyAlaCysLeuPheHisLeuLeuLeuLeuSerLeuProGlyGlnValLeuLeuAs : 512 ! !||| ||||||||||||:!!||||||||||||||||||:!!|||||||| ValAlaGlnLysPheHisLeuLeuIleLeuSerLeuProGlyGlnMetLeuLeuAs 1222662 : GTAGctcagaaatttcatttgctcATCCTTAGTTTACCTGGGCAAATGTTGTTAGA : 1222606 513 : pHisCysSerAspLeuAlaAsp : 519 |||| !!! !! ||||||||| pHisSerLeuGlyLeuAlaAsp 1222605 : TCATAGTTTAGGATTGGCCGAT : 1222583 vulgar: gi|815927462|ref|XP_012248265.1| 383 519 . KQ414851.1 1224093 1222582 - 226 M 22 66 S 0 2 5 0 2 I 0 446 3 0 2 S 1 1 M 21 63 G 1 0 M 47 141 5 0 2 I 0 652 3 0 2 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222583 1224093 226 - . gene_id 10 ; sequence gi|815927462|ref|XP_012248265.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1224026 1224093 . - . KQ414851.1 exonerate:protein2genome:local exon 1224026 1224093 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1224024 1224025 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1223576 1224025 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1223576 1223577 . - . intron_id 0 ; splice_site "AA" KQ414851.1 exonerate:protein2genome:local cds 1223371 1223575 . - . KQ414851.1 exonerate:protein2genome:local exon 1223371 1223575 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local splice5 1223369 1223370 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222715 1223370 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1222715 1222716 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222583 1222714 . - . KQ414851.1 exonerate:protein2genome:local exon 1222583 1222714 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222583 1224093 226 - . alignment_id 10 ; Query gi|815927462|ref|XP_012248265.1| ; Align 1224094 384 66 ; Align 1223575 407 63 ; Align 1223512 429 141 ; Align 1222715 476 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927462|ref|XP_012248265.1| PREDICTED: odorant receptor 49a-like, partial [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 213 Query range: 253 -> 341 Target range: 1243000 -> 1242664 254 : IleAsnLeuAspArgProGlyIleSerIleLysSerAlaValLeuCysGlyAlaAs : 272 ||||||||||||||||||! ! !! ! !!:!! !||| !!!! ! !|||.! IleAsnLeuAspArgProGluGluPheAlaArgIleAlaCysPheLeuIleAlaGl 1243000 : ATAAATCTAGATCGGCCTGAAGAATTTGCCAGAATTGCTTGTTTCCTTATAGCTCA : 1242946 273 : nGlnPheHisLeuPheMetLeuSerLeuProGlyGlnIleLeuValAspHisCysT : 291 .|||.!!||||||!!.:!::!!|||:!!||||||||||||:!!..!|||!!. !!: nGlnLeuHisLeuLeuValIleSerValProGlyGlnIleIleThrAspGlnSerS 1242945 : GCAACTCCACTTGTTAGTCATTAGTGTACCAGGGCAGATCATCACGGATCAAAGTT : 1242889 292 : hrGluLeuThrLysGln{Le} >>>> Target Intron 1 >>>> {u}Tyr : 298 !!:!!||||||! .!.{:!} 72 bp {!}||| erLysLeuThrIleAsp{Il}++ ++{e}Tyr 1242888 : CAAAGTTGACCATTGAC{AT}gt.........................ag{A}TAT : 1242796 299 : GlySerThrTrpTyrGlyValProValLysThrGlnLysMetLeuTyrMetMetGl : 317 ..!|||! !|||||| !..!|||||| !! !||||||!!:|||:!!!!::!:|| AsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIleValGl 1242795 : AACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATATAGTACA : 1242739 318 : nIleArgThrArgSerProCysThrLeuThrAlaCysGlyLeuTyrGlnMetAsnI : 336 |||||||:!! !!!.!||||||! !|||..!||| ! |||||||||:!!||||||| nIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluMetAsnI 1242738 : AATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAATGAACA : 1242682 337 : leGluAsnPheGlyThr : 341 ||||||||||||||:!! leGluAsnPheGlySer 1242681 : TTGAGAATTTTGGATCA : 1242665 vulgar: gi|815927462|ref|XP_012248265.1| 253 341 . KQ414851.1 1243000 1242664 - 213 M 43 129 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242665 1243000 213 - . gene_id 11 ; sequence gi|815927462|ref|XP_012248265.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1242870 1243000 . - . KQ414851.1 exonerate:protein2genome:local exon 1242870 1243000 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242868 1242869 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242798 1242869 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1242798 1242799 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242665 1242797 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242797 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242665 1243000 213 - . alignment_id 11 ; Query gi|815927462|ref|XP_012248265.1| ; Align 1243001 254 129 ; Align 1242797 298 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927462|ref|XP_012248265.1| PREDICTED: odorant receptor 49a-like, partial [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 196 Query range: 341 -> 406 Target range: 1234569 -> 1234059 342 : PheAsnLysLeuPheGlnLeuValAlaLysGlnTrpGluGlnLeuLysLeuAsnGl : 360 |||...|||::::::...||||||.!!!:!:!!||||||||||||!:!:!!|||! PheGlnLysMetTyrAspLeuValThrArgGluTrpGluGlnLeuArgMetAsnAs 1234569 : tttcaaaaaatgtatgaTCTTGTGACAAGAGAGTGGGAGCAGTTGAGGATGAACGA : 1234515 361 : yGluLeuHisValLeuGluGluValValLysGlnGlyAsnArgMetAlaHisPheT : 379 !||||||||||||||||||!!::!!..!! !||||||..!!:!:!:|||!!.|||| pGluLeuHisValLeuGluAspIleThrMetGlnGlyGlyLysLeuAlaGlnPheT 1234514 : CGAGTTGCATGTGCTTGAAGACATTACCATGCAAGGTGGTAAACTCGCGCAATTCT : 1234458 380 : yrArg{M} >>>> Target Intron 1 >>>> {et}PheThrIleIleGly : 386 |||||{!} 315 bp {!:}.!.! !|||||| ! yrArg{I}++ -+{le}MetIleIleIleThr 1234457 : ACAGA{A}gt.........................tg{TC}ATGATCATAATCACC : 1234122 387 : AlaAspTrpLeuTyrMetLeuIleIleHisHisSerSerGlyLeuPheAlaValCy : 405 !.!|||! !|||||||||:!!||||||||||||:!!||||||:!!||||||||||| ValAspSerLeuTyrMetIleIleIleHisHisAlaSerGlyMetPheAlaValCy 1234121 : GTAGACTCGTTGTACATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTGTG : 1234065 406 : sGly : 406 |||| sGly 1234064 : CGGG : 1234060 vulgar: gi|815927462|ref|XP_012248265.1| 341 406 . KQ414851.1 1234569 1234059 - 196 M 39 117 S 0 1 5 0 2 I 0 311 3 0 2 S 1 2 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234569 196 - . gene_id 12 ; sequence gi|815927462|ref|XP_012248265.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1234452 1234569 . - . KQ414851.1 exonerate:protein2genome:local exon 1234452 1234569 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234450 1234451 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1234137 1234451 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1234137 1234138 . - . intron_id 0 ; splice_site "TG" KQ414851.1 exonerate:protein2genome:local cds 1234060 1234136 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234136 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234569 196 - . alignment_id 12 ; Query gi|815927462|ref|XP_012248265.1| ; Align 1234570 342 117 ; Align 1234135 382 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927462|ref|XP_012248265.1| PREDICTED: odorant receptor 49a-like, partial [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 191 Query range: 441 -> 520 Target range: 1239471 -> 1238687 442 : GluAlaIleArgPheSerAspIleLeuLysGluSerSerArgGlySerTyrLeuIl : 460 .!.|||.!!|||! !! !:!!:!!|||:!!:!!|||||| ! !|||||||||.! HisAlaPheArgCysTyrAsnValLeuGlnLysSerSerValLeuSerTyrLeuPh 1239471 : CATGCTTTCAGGTGTTACAATGTTCTGCAGAAAAGCAGTGTGCTCAGTTACTTGTT : 1239417 461 : eGlnValGlyLeuAsnMetLeuSerIleSerAlaThrAlaValGln >>>> Tar : 476 !|||||||||||||||!!::!!.!!:!!|||!.!:!!||||||||| eGlnValGlyLeuAsnIleValGlyLeuSerValSerAlaValGln++ 1239416 : TCAAGTTGGATTAAACATAGTGGGCCTTAGTGTGTCAGCTGTTCAAgt........ : 1239367 477 : get Intron 1 >>>> ThrValIleAsnLeuAspArgProGluGluAlaIleA : 488 547 bp |||||| |||:!!||| !||| !! !|||:!:| ++ThrValGlyAsnIleAspAspProThrValAlaLeuA 1239366 : .................agACAGTGGGGAATATAGACGATCCGACAGTAGCTTTGA : 1238786 489 : rgSerAlaValPheCysGlyAlaCysLeuPheHisLeuLeuLeuLeuSerLeuPro : 506 ||!:!|||..! !!!! |||||| ! !.!!||||||!!!:!!:!!|||:!!||| rgAsnAlaThrValTrpGlyAlaLysGlnIleHisLeuPheIleIleSerIlePro 1238785 : GAAACGCTACGGTCTGGGGGGCTAAGCAAATTCACCTGTTCATCATCAGTATACCT : 1238732 507 : GlyGlnValLeuLeuAspHisCysSerAspLeuAlaAspAsn : 520 ||||||||||||:!!||||||||| !!!:|||:!!:!!:!! GlyGlnValLeuIleAspHisCysValGluLeuSerAsnAsp 1238731 : GGACAGGTGCTTATAGATCATTGTGTGGAGCTGTCAAACGAC : 1238688 vulgar: gi|815927462|ref|XP_012248265.1| 441 520 . KQ414851.1 1239471 1238687 - 191 M 34 102 5 0 2 I 0 543 3 0 2 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1238688 1239471 191 - . gene_id 13 ; sequence gi|815927462|ref|XP_012248265.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1239370 1239471 . - . KQ414851.1 exonerate:protein2genome:local exon 1239370 1239471 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1239368 1239369 . - . intron_id 1 ; splice_site "gt" KQ414851.1 exonerate:protein2genome:local intron 1238823 1239369 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1238823 1238824 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1238688 1238822 . - . KQ414851.1 exonerate:protein2genome:local exon 1238688 1238822 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1238688 1239471 191 - . alignment_id 13 ; Query gi|815927462|ref|XP_012248265.1| ; Align 1239472 442 102 ; Align 1238823 476 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927462|ref|XP_012248265.1| PREDICTED: odorant receptor 49a-like, partial [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 153 Query range: 341 -> 406 Target range: 1229734 -> 1229224 342 : PheAsnLysLeuPheGlnLeuValAlaLysGlnTrpGluGlnLeuLysLeuAsnGl : 360 |||...|||::::::...||||||.!!! !:!!||||||||||||!:!:!!|||! PheArgLysMetTyrAsnLeuValThrIleGluTrpGluGlnLeuArgMetAsnAs 1229734 : tttagaaaaatgtataatctCGTGACAATAGAGTGGGAGCAGTTGAGGATGAACGA : 1229680 361 : yGluLeuHisValLeuGluGluValValLysGlnGlyAsnArgMetAlaHisPheT : 379 !|||:!!|||||||||:!!||||||..! !:!!|||!:!!:!:!!|||!!.!!.| pGluValHisValLeuGlnGluValThrLeuLysGlySerLysLeuAlaGlnLeuT 1229679 : CGAGGTGCATGTGCTTCAAGAGGTTACTTTGAAAGGTAGTAAATTGGCCCAATTAT : 1229623 380 : yrArgMet<->PheThrIleIleGlyAla{A} >>>> Target Intron 1 > : 388 |||||! !:! !.!!!!: !:!!{|} 312 bp yrArgSerGluTyrLeuPheMetIleSer{A}-+ 1229622 : ACAGAAGTGAGTATCTTTTCATGATTTCC{G}at...................... : 1229590 389 : >>> {sp}TrpLeuTyrMetLeuIleIleHisHisSerSerGlyLeuPheAlaVa : 404 {||}! |||||||||:!!||||||:!!|||:!!||||||:!!||||||:! ++{sp}SerLeuTyrMetIleIleIleTyrHisAlaSerGlyMetPheAlaIl 1229589 : ...ag{AT}TCATTGTACATGATCATAATTTACCATGCCAGCGGAATGTTCGCTAT : 1229233 405 : lCysGly : 406 !|||||| eCysGly 1229232 : ATGCGGG : 1229225 vulgar: gi|815927462|ref|XP_012248265.1| 341 406 . KQ414851.1 1229734 1229224 - 153 M 40 120 G 0 3 M 6 18 S 0 1 5 0 2 I 0 308 3 0 2 S 1 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229734 153 - . gene_id 14 ; sequence gi|815927462|ref|XP_012248265.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1229593 1229734 . - . KQ414851.1 exonerate:protein2genome:local exon 1229593 1229734 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1229591 1229592 . - . intron_id 1 ; splice_site "AT" KQ414851.1 exonerate:protein2genome:local intron 1229281 1229592 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1229281 1229282 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1229225 1229280 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229280 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229734 153 - . alignment_id 14 ; Query gi|815927462|ref|XP_012248265.1| ; Align 1229735 342 120 ; Align 1229612 382 18 ; Align 1229279 389 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927462|ref|XP_012248265.1| PREDICTED: odorant receptor 49a-like, partial [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 152 Query range: 447 -> 517 Target range: 1243167 -> 1242880 448 : AspIleLeuLysGluSerSerArgGlySerTyrLeuIleGlnValGlyLeuAsnMe : 466 |||! !:!!!!.|||! !!!!!!! !!!!||||||.!!||||||||||||||||| AspThrIleAsnGluIleThrSerThrCysTyrLeuPheGlnValGlyLeuAsnMe 1243167 : GATACCATAAACGAAATCACTAGCACATGTTACTTGTTTCAAGTCGGACTTAATAT : 1243113 467 : tLeuSerIleSerAlaThrAlaValGln >>>> Target Intron 1 >>>> : 476 |:!!.!!||||||!.!|||:!!|||! ! 77 bp tIleGlyIleSerValThrSerValLeu++ + 1243112 : GATCGGTATTAGCGTGACGTCTGTTCTAgt.........................a : 1243008 477 : ThrValIleAsnLeuAspArgProGluGluAlaIleArgSerAlaValPheCysG : 494 .!! !!|||||||||||||||||||||||| ! !|||! !||| !||| ! +AlaPheIleAsnLeuAspArgProGluGluPheAlaArgIleAlaCysPheLeuI 1243007 : gGCCTTTATAAATCTAGATCGGCCTGAAGAATTTGCCAGAATTGCTTGTTTCCTTA : 1242952 495 : lyAlaCysLeuPheHisLeuLeuLeuLeuSerLeuProGlyGlnValLeuLeuAsp : 512 !||| ! !.!!|||||||||:!!:!!|||:!!|||||||||:!!:!! !||| leAlaGlnGlnLeuHisLeuLeuValIleSerValProGlyGlnIleIleThrAsp 1242951 : TAGCTCAGCAACTCCACTTGTTAGTCATTAGTGTACCAGGGCAGATCATCACGGAT : 1242898 513 : HisCysSerAspLeu : 517 !!. !!||| ! ||| GlnSerSerLysLeu 1242897 : CAAAGTTCAAAGTTG : 1242881 vulgar: gi|815927462|ref|XP_012248265.1| 447 517 . KQ414851.1 1243167 1242880 - 152 M 28 84 5 0 2 I 0 73 3 0 2 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242881 1243167 152 - . gene_id 15 ; sequence gi|815927462|ref|XP_012248265.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1243084 1243167 . - . KQ414851.1 exonerate:protein2genome:local exon 1243084 1243167 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1243082 1243083 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243007 1243083 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1243007 1243008 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242881 1243006 . - . KQ414851.1 exonerate:protein2genome:local exon 1242881 1243006 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242881 1243167 152 - . alignment_id 15 ; Query gi|815927462|ref|XP_012248265.1| ; Align 1243168 448 84 ; Align 1243007 476 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927462|ref|XP_012248265.1| PREDICTED: odorant receptor 49a-like, partial [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 147 Query range: 245 -> 297 Target range: 1238840 -> 1238684 246 : ThrThrThrAlaValGlnThrValIleAsnLeuAspArgProGlyIleSerIleLy : 264 |||:!! !!.! !!||||||||| |||:!!||| !||| !:!!:!!:!:!: ThrSerPheValPheGlnThrValGlyAsnIleAspAspProThrValAlaLeuAr 1238840 : ACTTCATTTGTTTTCCAGACAGTGGGGAATATAGACGATCCGACAGTAGCTTTGAG : 1238786 265 : sSerAlaValLeuCysGlyAlaAsnGlnPheHisLeuPheMetLeuSerLeuProG : 283 !!:!|||..!:!!!! ||||||!!.|||.!!|||||||||!!::!!|||:!!|||| gAsnAlaThrValTrpGlyAlaLysGlnIleHisLeuPheIleIleSerIleProG 1238785 : AAACGCTACGGTCTGGGGGGCTAAGCAAATTCACCTGTTCATCATCAGTATACCTG : 1238729 284 : lyGlnIleLeuValAspHisCysThrGluLeuThrLysGlnLeu : 297 |||||:!:|||:!!|||||||||..!||||||:!!!!..!.:!! lyGlnValLeuIleAspHisCysValGluLeuSerAsnAspMet 1238728 : GACAGGTGCTTATAGATCATTGTGTGGAGCTGTCAAACGACATG : 1238685 vulgar: gi|815927462|ref|XP_012248265.1| 245 297 . KQ414851.1 1238840 1238684 - 147 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1238685 1238840 147 - . gene_id 16 ; sequence gi|815927462|ref|XP_012248265.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1238685 1238840 . - . KQ414851.1 exonerate:protein2genome:local exon 1238685 1238840 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1238685 1238840 147 - . alignment_id 16 ; Query gi|815927462|ref|XP_012248265.1| ; Align 1238841 246 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927462|ref|XP_012248265.1| PREDICTED: odorant receptor 49a-like, partial [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 136 Query range: 341 -> 406 Target range: 1240295 -> 1239821 342 : PheAsnLysLeuPheGlnLeuValAlaLysGlnTrpGluGlnLeuLysLeuAsnGl : 360 |||......||| ! !|||!.!:!!:!!||||||:!!|||!:!:!!!:!.. PheLysAsnLeuCysIleSerValValGluLysTrpGluGluLeuArgIleSerAs 1240295 : tttaaaaatttatgcattTCTGTGGTGGAAAAATGGGAAGAGTTGAGGATCAGTAA : 1240241 361 : yGluLeuHisValLeuGluGluValValLysGlnGlyAsnArgMetAlaHisPheT : 379 !|||||| !|||||||||||||||..! ||||||!:::::............| nGluLeuSerValLeuGluGluValThrAlaGlnGlySerLysPheValGlnLeuT 1240240 : CGAGTTAAGCGTGCTGGAAGAAGTTACCGCCCAAGGGAGcaaatttgtacaattgt : 1240184 380 : yrArg{M} >>>> Target Intron 1 >>>> {et}PheThrIleIleGly : 386 |||||{!} 279 bp { !}.!.:!!:!::!!.!! yrArg{A}+- -+{rg}IleSerValLeuSer 1240183 : aCAGA{A}gc.........................tg{GG}ATATCTGTGCTTAGC : 1239884 387 : AlaAspTrpLeuTyrMetLeuIleIleHisHisSerSerGlyLeuPheAlaValCy : 405 :!!!!:! !:!!|||:!:|||:!!|||||||||!!!||||||||||||||||||.. SerGluLeuIleTyrValLeuLeuIleHisHisThrSerGlyLeuPheAlaValAl 1239883 : TCAGAATTGATATACGTCCTTCTTATTCATCATACCAGCGGTCTGTTTGCTGTGGC : 1239827 406 : sGly : 406 !||| aGly 1239826 : TGgg : 1239822 vulgar: gi|815927462|ref|XP_012248265.1| 341 406 . KQ414851.1 1240295 1239821 - 136 M 39 117 S 0 1 5 0 2 I 0 275 3 0 2 S 1 2 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240295 136 - . gene_id 17 ; sequence gi|815927462|ref|XP_012248265.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1240178 1240295 . - . KQ414851.1 exonerate:protein2genome:local exon 1240178 1240295 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1240176 1240177 . - . intron_id 1 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1239899 1240177 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1239899 1239900 . - . intron_id 0 ; splice_site "TG" KQ414851.1 exonerate:protein2genome:local cds 1239822 1239898 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1239898 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240295 136 - . alignment_id 17 ; Query gi|815927462|ref|XP_012248265.1| ; Align 1240296 342 117 ; Align 1239897 382 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927462|ref|XP_012248265.1| PREDICTED: odorant receptor 49a-like, partial [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 13 -> 59 Target range: 1234767 -> 1234629 14 : IleAlaLeuTyrGluSerLeuTyrThrLysAsnLeuAspValMetLeuGluCysLe : 32 |||! !:!!|||! !..!|||! ! !||||||:!!|||!.!:!!:!!|||||||| IleGluIleTyrValGlnLeuCysGluLysAsnMetAspAlaValIleGluCysLe 1234767 : ATCGAGATATATGTACAACTTTGTGAGAAGAATATGGACGCAGTGATCGAGTGTTT : 1234713 33 : uProHisLeuAlaAlaIleValThrSerPheValLysIleMetAsnValTyrLeuA : 51 ||||:!! ! !||| !!.!|||||| ! ||||||:!::!!||||||||||||| uProAsnGlyIleAlaAlaAlaThrSerValValLysLeuLeuAsnValTyrLeuA 1234712 : GCCGAATGGTATCGCAGCCGCGACCAGCGTGGTGAAATTGTTGAACGTTTACTTAA : 1234656 52 : snArgGluAsnPheArgLysLeuPhe : 59 ||||||||||| ! ||| !!!||| snArgGluAsnValArgAlaPhePhe 1234655 : ACAGGGAAAATGTACGTGCCTTCTTT : 1234630 vulgar: gi|815927462|ref|XP_012248265.1| 13 59 . KQ414851.1 1234767 1234629 - 130 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234630 1234767 130 - . gene_id 18 ; sequence gi|815927462|ref|XP_012248265.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234630 1234767 . - . KQ414851.1 exonerate:protein2genome:local exon 1234630 1234767 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234630 1234767 130 - . alignment_id 18 ; Query gi|815927462|ref|XP_012248265.1| ; Align 1234768 14 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927462|ref|XP_012248265.1| PREDICTED: odorant receptor 49a-like, partial [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 9 -> 59 Target range: 1229944 -> 1229794 10 : IleProMetSerIleAlaLeuTyrGluSerLeuTyrThrLysAsnLeuAspValMe : 28 :!!! !..!! !|||! !:!!|||! !..!||| !! !||||||:!!|||! !|| ValGlnGlnLeuIleGluMetTyrValGlnLeuArgLysLysAsnMetAspAspMe 1229944 : GTTCAACAGTTGATCGAGATGTATGTGCAATTGCGTAAGAAGAATATGGACGATAT : 1229890 29 : tLeuGluCysLeuProHisLeuAlaAlaIleValThrSerPheValLysIleMetA : 47 |:!!||| !!!!! !!:!! ! !||| !!.!||||||.!.||||||:!::!!| tMetGluSerPheAlaAsnThrIleAlaAlaAlaThrSerLeuValLysLeuLeuA 1229889 : GATGGAGAGTTTTGCGAATACTATTGCTGCCGCGACCAGCCTGGTGAAATTGTTGA : 1229833 48 : snValTyrLeuAsnArgGluAsnPheArgLysLeuPhe : 59 ||||||||||||||||||||||| ! ||| !!!||| snValTyrLeuAsnArgGluAsnValArgAlaPhePhe 1229832 : ACGTTTACTTAAACAGGGAAAATGTACGTGCCTTCTTT : 1229795 vulgar: gi|815927462|ref|XP_012248265.1| 9 59 . KQ414851.1 1229944 1229794 - 113 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229795 1229944 113 - . gene_id 19 ; sequence gi|815927462|ref|XP_012248265.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229795 1229944 . - . KQ414851.1 exonerate:protein2genome:local exon 1229795 1229944 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229795 1229944 113 - . alignment_id 19 ; Query gi|815927462|ref|XP_012248265.1| ; Align 1229945 10 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 907 Query range: 130 -> 409 Target range: 300009 -> 302169 131 : SerHisArgAlaIleMetLeuLysTyrAlaGlyValSerArgLysLeuIleThrValC : 150 !:!||||||.!!|||||||||!:!|||!.! !:!!||||||!!.|||! ||||||| AsnHisArgThrIleMetLeuArgTyrValThrMetSerArgAsnLeuThrThrValC 300010 : AATCATCGTACGATCATGTTGAGATACGTGACTATGAGCAGAAATCTGACGACCGTGT : 300067 151 : ysAlaValPheIleTyrThrGlyGlyMetSerTyrHisThrValAlaGlnPheLeuSe : 169 |||||||||||:!!|||.!!|||||||||||||||||||||||| !||||||||||| ysAlaValPheLeuTyrAlaGlyGlyMetSerTyrHisThrValMetGlnPheLeuSe 300068 : GCGCCGTGTTTCTTTACGCAGGTGGTATGTCGTATCACACGGTGATGCAGTTCTTATC : 300124 170 : rLysGluArgThr{Ar} >>>> Target Intron 1 >>>> {g}GluAsnTyr : 177 ||||!!:|||!:!{||} 45 bp {|}||||||||| rLysAspArgSer{Ar}-- ++{g}GluAsnTyr 300125 : GAAGGACAGAAGC{AG}cg.........................ag{G}GAGAATTAC : 300193 178 : ThrValArgProLeuAlaTyrIleGlyTyrAspProPhePheAspThrGlnSerSerP : 197 ||| !!:!|||||||||||| !||||||||| !|||.!!|||||||||!!!|||| ThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnThrSerP 300194 : ACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAACCAGTC : 300253 198 : roThrTyrGluIleValPheLeuLeuHisCysPheAlaAlaMetIleMetTyrSerIl : 216 ||||||||||||||||||||......|||||||||||||||||||||||||||!:!:! roThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTyrAsnVa 300254 : CTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTACAACGT : 300310 217 : eThrThrValAlaTyrGlyLeuAlaAlaValPheValThrHisValCysGlyGlnIle : 235 :||||||!.!||||||.!!|||||||||:!!||||||||||||:!!|||||||||||| lThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGlyGlnIle 300311 : GACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGACAGATT : 300367 236 : GlnIleGlnIleAlaArgLeuGlnAsnLeuValGlu<-><->SerLysAspArgAspL : 253 |||||||||!!:|||||||||:!!:!!||||||||| .!!:!! ! !||| GlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrGlyGluLysAspAspG 300368 : CAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGGGAGAGAAGGACGACG : 300427 254 : euPheSerValIleValHisAspHisAlaGluThrLeuLysIleLeu{Ar} >>>> : 269 ! !..! !:!:||| ! ! ! !!!: !:!!|||:!!|||{||} lyProAspProLeuValValIleValArgAspHisValLysValLeu{Ar}++ 300428 : GTCCTGATCCTTTGGTCGTTATCGTTCGAGATCACGTGAAGGTTTTA{AG}gt..... : 300479 270 : Target Intron 2 >>>> {g}PheSerLysAsnIleGluAspAlaLeuTyrGln : 280 140 bp {|}|||:!!||||||:!!|||!!:.!!||| !.!. ++{g}PheAlaLysAsnValGluGluThrLeuArgAsp 300480 : ....................ag{A}TTTGCAAAGAACGTTGAGGAAACTTTGCGTGAC : 300648 281 : IleCysLeuThrGluIleValGluCysThrIleAsnMetCysMetLeuGluTyrTyrC : 300 .!!||||||..!|||||| !!|||! !|||:!:! !:!!|||:!!||||||||||||| PheCysLeuValGluIlePheGluSerThrLeuIleLeuCysLeuLeuGluTyrTyrC 300649 : TTCTGCTTAGTGGAAATCTTCGAGTCCACGCTGATTTTGTGTTTGCTCGAATACTACT : 300708 301 : ysLeuVal >>>> Target Intron 3 >>>> GluTrpAlaAsnSerAspLeu : 309 |||||||| 970 bp |||||| !||||||||| ! ysLeuVal++ ++GluTrpGlnAsnSerAspThr 300709 : GTTTGGTGgt.........................agGAATGGCAAAATAGCGACACG : 301705 310 : IleAlaThrLeuThrTyrMetThrLeuLeuIleSerPheThrPheAsnIlePheIleP : 329 ||||||! !||||||!:!.!.|||||||||! ||||||||||||||||||||||||| IleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAsnIlePheIleP 301706 : ATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATATTCATAT : 301765 330 : heCysTyrIleGlyGluLeuLeuSerGluGln >>>> Target Intron 4 >>> : 340 |||||||||||||||||:!!|||||||||||| 80 bp heCysTyrIleGlyGluIleLeuSerGluGln++ 301766 : TCTGCTACATCGGCGAGATTCTTTCCGAACAGgt........................ : 301800 341 : > CysSerGluIleGlyThrValSerTyrGluIleAspTrpTyrAsnLeuProAlaL : 358 ||||||:!!||||||:!!!.!|||||||||||||||||||||||||||||||||| ++CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaL 301801 : .agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGA : 301932 359 : ysGluAlaTyrAspLeuIleLeuLeuIleSerIleSerGlnTyrProProLysLeuTh : 377 ||..!|||||||||||||||||||||! ! !|||||||||||||||||||||||||| ysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuTh 301933 : AGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTAC : 301989 378 : rAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSerSer >>>> Target I : 392 ||||||||||||||||!!:|||||||||||||||||||||||| 82 rAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSer++ 301990 : AGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTgt............. : 302036 393 : ntron 5 >>>> ValAlaLysThrSerLeuValTyrLeuAsnLeuLeuGlnThrVa : 406 bp |||!.!|||||||||:!!||||||||||||||||||!:!||||| ++ValValLysThrSerValValTyrLeuAsnLeuLeuArgThrVa 302037 : ............agGTGGTGAAAACATCGGTGGTGTACTTGAATTTACTGCGAACAGT : 302158 407 : lAlaAspTrp : 409 |.!!:!!||| lThrAsnTrp 302159 : TACAAACtgg : 302169 vulgar: gi|815911906|ref|XP_012241394.1| 130 409 . KQ414889.1 300009 302169 + 907 M 43 129 S 0 2 5 0 2 I 0 41 3 0 2 S 1 1 M 73 219 G 0 6 M 21 63 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 33 99 5 0 2 I 0 966 3 0 2 M 37 111 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300010 302169 907 + . gene_id 1 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300010 300140 . + . KQ414889.1 exonerate:protein2genome:local exon 300010 300140 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300141 300142 . + . intron_id 1 ; splice_site "CG" KQ414889.1 exonerate:protein2genome:local intron 300141 300185 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300184 300185 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300186 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300186 300476 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 300616 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 300615 300616 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300617 300716 . + . KQ414889.1 exonerate:protein2genome:local exon 300617 300716 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300717 300718 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300717 301686 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 301685 301686 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 5 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 5 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 4 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302169 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302169 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300010 302169 907 + . alignment_id 1 ; Query gi|815911906|ref|XP_012241394.1| ; Align 300010 131 129 ; Align 300187 175 219 ; Align 300412 248 63 ; Align 300618 270 99 ; Align 301687 303 111 ; Align 301878 340 156 ; Align 302116 392 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 617 Query range: 6 -> 247 Target range: 289684 -> 290407 7 : ThrIleGlyAspAspGlnLeuLysAsnAsnHisTyrGlnAsnAspIleGlnTyrThrL : 26 :!!.!!.!!..!|||!::! !..!|||:!!!.!|||:!!!..||||||!::||||||! SerPheSerSerAspArgProSerAsnAspArgTyrGluThrAspIleArgTyrThrP 289685 : TCGTTCAGCAGCGATCGTCCGTCGAACGATCGTTACGAAACGGACATACGTTACACGT : 289742 27 : euGlnMetCysGlnTrpLeuLeuLysLeuIleGlyIleTrpProLeuLeuAsnAsnHi : 45 !!:!!:!:|||!!.|||:!!||||||! !||||||!!:!::|||!!!:!! !!:!!. heGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrProPheValPheSerAr 289743 : TCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCG : 289799 46 : sThrSerArgLeuGluGlnLeuLeuSerIleValLeuMetIleThrCysTyrSerSer : 64 !.!!||||||! !|||!:! ! !|||:!::!!|||!!::!:..!|||! !|||! ! gAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLeuValCysCysSerIle 289800 : TGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATC : 289856 65 : IlePhePheIleIleLeuProSerGlyHisHisPhePhePheValGluLysAsnLeuT : 84 :!! |||||||||:!!|||! !.!!|||||| !!.!.||| !!!:!!.:!!:!! LeuGlnPheIleIleValProPheSerHisHisValLeuPheSerAspAsnAspMetA 289857 : CTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAACGACATGA : 289916 85 : yrMetLysMetLysMetLeuGlyProValSerPheCysValPheAlaThrValLysTy : 103 !!! ! :!:|||! |||||||||:!!!!!||||||:!! !.!! ! !!||||| snThrPheValLysAsnLeuGlyProLeuThrPheCysLeuThrThrPhePheLysTy 289917 : ACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTA : 289973 104 : rSerTyrLeuAlaArgLysGlyAlaPheLeuGlnSerCysIleArgGlnLeuArgAsn : 122 |!!!|||!!!::!! !||||||:!! :!! !!|||:!:!:!!!.:!!..!!.. rCysTyrPheSerMetLysGlySerAlaIleGlyArgCysValLysHisIleGluArg 289974 : TTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGA : 290030 123 : AspTrpLysArgValGlnAspProSerHisArgAlaIleMetLeuLysTyrAlaGlyV : 142 |||||||||! !:!!!::||| !..!||||||!.!|||||||||!:!|||!.! !: AspTrpLysMetLeuArgAspGluAspHisArgValIleMetLeuArgTyrValThrM 290031 : GACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATACGTGACGA : 290090 143 : alSerArgLysLeuIleThrValCysAlaValPheIleTyrThrGlyGlyMetSerTy : 161 !!||||||!!.||||||! !:!!||||||:!!|||:!:|||! !||||||:!!||||| etSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyLeuSerTy 290091 : TGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTA : 290147 162 : rHisThrValAlaGlnPheLeuSerLysGluArgThrArgGluAsnTyrThrValArg : 180 |:!!|||||| !! !!!.!!!||||||:!!!!!..!!.!! ||| |||:!!||| rAsnThrValIleProLeuPheSerLysLysSerValAsnGlyAsnValThrIleArg 290148 : TAACACTGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGGTAACGTGACTATCAGA : 290204 181 : ProLeuAlaTyrIleGlyTyrAspProPhePheAspThrGlnSerSerProThrTyrG : 200 ||||||.!!||| !||||||!!: !|||||||||..!|||!.!||||||.!!|||| ProLeuThrTyrProGlyTyrGluGluPhePheAspValGlnLysSerProAlaTyrG 290205 : CCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACG : 290264 201 : luIleValPheLeuLeuHisCysPheAlaAlaMetIleMetTyrSerIleThrThrVa : 219 |||||||||||! !:!!|||||| !! !!.!||||||! ! !:!||||||! !!. luIleValPheCysMetHisCysValTyrValMetIleThrAlaAsnIleThrMetAl 290265 : AGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGC : 290321 220 : lAlaTyrGlyLeuAlaAlaValPheValThrHisValCysGlyGlnIleGlnIleGln : 238 !||||||.!!|||.!!.!!:!!|||!.!||||||..!||||||||||||:!!|||||| aAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGlnIleLysIleGln 290322 : GGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAA : 290378 239 : IleAlaArgLeuGlnAsnLeuValGlu : 247 ! .!!||||||:!!:!!|||..!:!! ThrThrArgLeuGluAspLeuThrLys 290379 : ACGACGCGGCTGGAGGATCTGACAAAG : 290407 vulgar: gi|815911906|ref|XP_012241394.1| 6 247 . KQ414889.1 289684 290407 + 617 M 241 723 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289685 290407 617 + . gene_id 2 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289685 290407 . + . KQ414889.1 exonerate:protein2genome:local exon 289685 290407 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289685 290407 617 + . alignment_id 2 ; Query gi|815911906|ref|XP_012241394.1| ; Align 289685 7 723 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 550 Query range: 18 -> 393 Target range: 204221 -> 206404 19 : GlnAsnAspIleGlnTyrThrLeuGlnMetCysGlnTrpLeuLeuLysLeuIleGlyI : 38 :!!.!.|||:!:::!|||.!! !!::.!. :!! !:!!||| !:!!:!!||| GluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyA 204222 : GAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTG : 204279 39 : leTrpProLeuLeuAsnAsnHisThrSerArgLeuGluGlnLeuLeuSerIleValLe : 57 ||||||:!!! ! ||| :!!|||! !!!! !::!|||:!! !! !:!! laTrpProIleProValAsn---SerSerProPheThrArgLeuValArgArgIleGl 204280 : CGTGGCCGATTCCAGTGAAC---TCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGA : 204333 58 : uMetIleThrCysTyrSerSerIlePhePheIleIleLeuProSerGlyHisHisPhe : 76 ! :!!..! !||| ...|||...:!:|||:!!|||.!! ! :!! ! uHisValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrVal 204334 : ACACGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTG : 204390 77 : PhePheValGluLysAsnLeuTyrMetLysMetLysMetLeuGlyProValSerPheC : 96 |||.!. !||||||||| ! ! !!:::::!!|||!!:|||||||||:!! ! !| PheLeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnC 204391 : TTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACT : 204450 97 : ysValPheAlaThrValLysTyrSerTyrLeuAlaArgLysGlyAlaPheLeuGlnSe : 115 || !.!. ! ! !!||||||||| !:!! ! !::! !! ! :!!|||!. ysSerIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLy 204451 : GCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAA : 204507 116 : rCysIleArgGlnLeuArgAsnAspTrpLysArgValGlnAspProSerHisArgAla : 134 ! !!:!:!.! :!!|||..!||||||! !..!!.! !||| ..!:!!||| ! sSerLeuAsnThrIleArgArgAspTrpIleGluAlaThrAsp---GluAsnArgLeu 204508 : GAGTTTGAACACCATCAGACGCGACTGGATAGAGGCTACGGAT---GAAAATCGGTTG : 204561 135 : IleMetLeuLysTyrAlaGlyValSerArgLysLeuIleThrValCysAlaValPheI : 154 |||.!.! !..! ! ||| !:!!.!!|||!:!:!!:!: !:!!...|||!.! !! IlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrM 204562 : ATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTA : 204621 155 : leTyrThrGlyGlyMetSerTyrHisThrValAlaGlnPheLeu<->SerLysGluAr : 172 !:||| !||||||:!!!!!|||...|||:!! !! !!.||| .!!! ! etTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleVa 204622 : TGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGT : 204678 173 : gThrArgGluAsnTyrThrValArgProLeuAlaTyrIleGlyTyrAspProPhePhe : 191 !|||! !!!:||| !|||:!!||||||||| !!! ! ! !||| |||||| lThrProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePhe 204679 : AACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttcttt : 204735 192 : AspThrGlnSerSerProThrTyrGluIleValPheLeuLeuHisCysPheAlaAlaM : 211 ::: !||| !!||||||!.!|||||||||||||||:!!|||!!. !.!.|||!.!. AsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyP 204736 : aacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTT : 204795 212 : etIleMetTyrSerIleThrThrValAlaTyrGlyLeuAlaAlaValPheValThrHi : 230 !.:!!! |||:!!:!!! !!:!! !.!!! !|||:!!..!|||:!!|||||| !|| heValThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHi 204796 : TTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCA : 204852 231 : sValCysGlyGlnIleGlnIleGlnIleAlaArgLeuGlnAsnLeuValGluSerLys : 249 |!.!|||.!!..!:!:::!||| !:!: !!:!:!!.!. ||||||!!:!.! ! sAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAla 204853 : CGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCG : 204909 250 : Asp<-><->ArgAspLeuPheSerValIleValHisAspHisAlaGlu<->ThrLeuL : 266 ||| ..! ||| ! ! !! :!! !||| !!.!||| ! !| AspMetThrGluThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrL 204910 : GACATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGA : 204969 267 : ysIleLeu{Ar} >>>> Target Intron 1 >>>> {g}PheSerLysAsnIl : 274 ||||| !{||} 905 bp {|}|||! !|||||||| ysIleLys{Ar}++ ++{g}PheLeuLysAsnIl 204970 : AGATAAAG{AG}gt.........................ag{A}TTTTTAAAGAACAT : 205898 275 : eGluAspAlaLeuTyrGlnIleCysLeuThrGluIleValGluCysThrIleAsnMet : 293 |||| ! ! ! ! |||||||||||||||!!:|||! !!||| ! :!: eGluThrIleThrGluTyrIleCysLeuThrGluMetValGlyGlyThrGlyLeuVal 205899 : TGAAACAATTACAGAGTACATTTGTTTAACCGAAATGGTGGGCGGTACGGGTCTAGTA : 205955 294 : CysMetLeuGluTyrTyrCysLeuVal >>>> Target Intron 2 >>>> Gl : 303 |||:!::!! ! |||||| !|||:!! 66 bp || CysLeuValTyrTyrTyrIleLeuMet++ ++Gl 205956 : TGTCTCGTGTATTATTACATTCTCATGgt.........................agGA : 206051 304 : uTrpAlaAsnSerAspLeuIleAlaThrLeuThrTyrMetThrLeuLeuIleSerPhe : 322 ||||! !|||!:!:!! !! !|||..!:!!..!|||!!:||||||! !||||||! ! uTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerCys 206052 : ATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTTGT : 206108 323 : ThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuSerGluGln >>>> : 340 |||||| !:!!||||||.!.||||||||||||:!!||||||! !!!:||| ThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : ACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt..... : 206164 341 : Target Intron 3 >>>> CysSerGluIleGlyThrValSerTyrGluIleAsp : 351 81 bp ! !! :!:||| !..!|||! ! !:!::!! ++AsnHisValValGlyLeuThrSerCysThrValAsn 206165 : ....................agAACCACGTCGTGGGATTGACATCTTGCACGGTGAAT : 206276 352 : TrpTyrAsnLeuProAlaLysGluAlaTyrAspLeuIleLeuLeuIleSerIleSerG : 371 ||||||..!|||||| !!:!.!.||| !..!:!!||||||:!!|||:!!!!:|||. TrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSerA 206277 : TGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTCTA : 206336 372 : lnTyrProProLysLeuThrAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSe : 390 !.|||||| !||||||||||||||||||!!:.!!|||:!!|||||| !!:!|||!! snTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPheTh 206337 : ATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTCAC : 206393 391 : rSerValAla : 393 !..!|||::! rAspValSer 206394 : CGATGTAAGT : 206404 vulgar: gi|815911906|ref|XP_012241394.1| 18 393 . KQ414889.1 204221 206404 + 550 M 26 78 G 1 0 M 84 252 G 1 0 M 38 114 G 0 3 M 82 246 G 0 6 M 13 39 G 0 3 M 5 15 S 0 2 5 0 2 I 0 901 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204222 206404 550 + . gene_id 3 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 204222 204979 . + . KQ414889.1 exonerate:protein2genome:local exon 204222 204979 . + . insertions 12 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 204980 204981 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 204980 205884 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 205883 205884 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 205885 205984 . + . KQ414889.1 exonerate:protein2genome:local exon 205885 205984 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 205985 205986 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 205985 206050 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 206049 206050 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206404 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206404 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 204222 206404 550 + . alignment_id 3 ; Query gi|815911906|ref|XP_012241394.1| ; Align 204222 19 78 ; Align 204300 46 252 ; Align 204552 131 114 ; Align 204669 169 246 ; Align 204921 251 39 ; Align 204963 264 15 ; Align 205886 270 99 ; Align 206051 303 111 ; Align 206243 340 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 480 Query range: 14 -> 339 Target range: 208185 -> 210774 15 : AsnAsnHisTyrGlnAsnAspIleGlnTyrThrLeuGlnMetCysGlnTrpLeuLeuL : 34 |||!..:!!|||:!!||||||:!:...!:!!.!:!!!:::!! ! !||| !|||| AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 35 : ysLeuIleGlyIleTrpProLeuLeuAsnAsnHisThrSerArgLeuGluGlnLeuLe : 53 ||:!!|||||| !|||||| !::!! !! !||| !!||||||.!. !! ysIleIleGlySerTrpPro---ArgSerIleAspArgSerTrpLeuGluAsnSerGl 208244 : AGATAATCGGCTCCTGGCCG---AGATCTATAGATCGTTCCTGGTTAGAGAACAGCCA : 208297 54 : uSerIleValLeuMetIleThrCysTyrSerSerIlePhePheIleIleLeuProSer : 72 ! !|||:!!|||! :!! ! !!:!!!!!! !:!! !||||||:!::!!|||!!! nHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThr 208298 : GCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACC : 208354 73 : GlyHisHisPhePhePheValGluLysAsnLeuTyrMetLysMetLysMetLeuGlyP : 92 ||| ! .!!.!!|||! :!!:!!!!!||| :!!:!:|||!!:! !.!! GlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerA 208355 : GGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCG : 208414 93 : roValSerPheCysValPheAlaThrValLysTyrSerTyrLeuAlaArgLysGlyAl : 111 !!:!!||||||! !:!!.!.||| !..!|||||| ! !:!!.!! !:::! !!. laLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGl 208415 : CTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGG : 208471 112 : aPheLeuGlnSerCysIleArgGlnLeuArgAsnAspTrpLysArgValGlnAspPro : 130 ! !:!!!:!!.!|||:!!..! ! :!!..! !||||||!:!!.!|||:!! !! ! yAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGlu 208472 : TGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAG : 208528 131 : SerHisArgAlaIleMetLeuLysTyrAlaGlyValSerArgLysLeuIleThrValC : 150 ..! !!||| !||||||||| ! !!|||.!! !!:!!||||||||||||..!:!!| GluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleC 208529 : GAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATAT : 208588 151 : ysAlaValPheIleTyrThrGlyGlyMetSerTyrHisThrValAlaGlnPheLeuSe : 169 ||!.!!.!|||!!:||| !||| ::: |||::: !!.! !! !.!! ! ! ysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrAr 208589 : GCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCG : 208645 170 : rLysGluArgThrArgGlu<-><->AsnTyrThrValArgProLeuAlaTyrIleGly : 186 ! ! :!! !..!..!||| |||! ||| !||| !|||!.!||| !! ! gAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProVal 208646 : AGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTT : 208702 187 : TyrAspProPhePheAspThrGlnSerSerProThrTyrGluIleValPheLeuLeuH : 206 ! ! !.!!.!.|||..!!:!! !||||||..! !!|||||| !!!:! !:!!! ProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValG 208703 : CCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTAC : 208762 207 : isCysPheAlaAlaMetIleMetTyrSerIleThrThrValAlaTyrGlyLeuAlaAl : 225 !.! !!.:!!!.!.!.:!! :!!!:!||||||..!! !|||! !||||||||||| lnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAl 208763 : AATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGC : 208819 226 : aValPheValThrHisValCysGlyGlnIleGlnIleGlnIleAlaArgLeuGlnAsn : 244 |:!!.!!!.!! !|||!.!|||||||||:!:|||||| !!!::!! !!:!!:!!!!. aLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLys 208820 : GCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAG : 208876 245 : LeuVal<-><-><->GluSerLysAspArgAspLeuPheSerValIleValHisAspH : 261 |||||| |||..!:!!!!:!:!:!!||| !..! !:!:!.!:!! ! LeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleV 208877 : TTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCG : 208936 262 : isAlaGluThrLeuLysIleLeu{Ar} >>>> Target Intron 1 >>>> {g : 269 ! !:!! !:!!::!:!::!!{!.} 1536 bp {! alGluGlnHisValArgValIle{As}++ ++{n 208937 : TGGAGCAGCATGTTCGAGTGATC{AA}gt.........................ag{T : 210498 270 : }PheSerLysAsnIleGluAspAlaLeuTyrGlnIleCysLeuThrGluIleValGlu : 288 }|||! ! ! !|||:!! !|||:!!:!!|||! |||! !|||!!:|||! ! }PheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGluMetValGly 210499 : }TTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAATGGTGGGG : 210553 289 : CysThrIleAsnMetCysMetLeuGluTyrTyrCysLeuVal >>>> Target In : 303 ||||||:!:|||||||||.!.|||! |||||| :!!:!! 66 b CysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210554 : TGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt.............. : 210600 304 : tron 2 >>>> GluTrpAlaAsnSerAspLeuIleAlaThrLeuThrTyrMetThr : 317 p ||||||! !::!!.!|||! !|||::!!:!|||||||||!!:..! ++GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleVal 210601 : ...........agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTA : 210706 318 : LeuLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuS : 337 ||||||! !||| !!||||||||||||||||||||||||||||||||||||:!!|||: LeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuA 210707 : CTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGG : 210766 338 : erGluGln : 339 !!|||||| laGluGln 210767 : CTGAACAg : 210774 vulgar: gi|815911906|ref|XP_012241394.1| 14 339 . KQ414889.1 208185 210774 + 480 M 26 78 G 1 0 M 134 402 G 0 6 M 71 213 G 0 9 M 22 66 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 210774 480 + . gene_id 4 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208186 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208961 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208186 210774 480 + . alignment_id 4 ; Query gi|815911906|ref|XP_012241394.1| ; Align 208186 15 78 ; Align 208264 42 402 ; Align 208672 176 213 ; Align 208894 247 66 ; Align 210499 270 99 ; Align 210664 303 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 440 Query range: 14 -> 398 Target range: 256625 -> 258642 15 : AsnAsnHisTyrGlnAsnAspIleGlnTyrThrLeuGlnMetCysGlnTrpLeuLeuL : 34 !!.!..:!!!:!:!!!:! !!! !.!.|||!:!||||||:!! !!:!|||!!!|||| LysThrAsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuL 256626 : AAGACGAATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGA : 256683 35 : ysLeuIleGlyIleTrpProLeuLeuAsnAsnHisThrSerArgLeuGluGlnLeuLe : 53 ||! !|||||| !|||||| ! !:::::: !|||!!!! !||||||!:! !:! ysProIleGlyAlaTrpPro---ProSerSerSerThrThrThrLeuGluArgAsnVa 256684 : AACCTATAGGCGCATGGCCA---CCCTCGTCGTCCACTACAACCCTCGAGCGAAACGT : 256737 54 : uSerIleValLeuMetIleThrCysTyrSerSerIlePhePheIleIleLeuProSer : 72 !||||||||||||! |||..!||||||.!!||||||!!.|||! !:!::!!|||!!! lSerIleValLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIleProCys 256738 : TTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGT : 256794 73 : GlyHisHisPhePhePheValGluLysAsnLeuTyrMetLysMetLysMetLeuGlyP : 92 !! !||| ! |||.!!! !!!: ! !:!!!!|||||||||:::||| ...|||| LeuLeuHisValPheLeuAspAspAspSerPheTyrMetLysValLysAsnPheGlyP 256795 : TTGCTCCATGTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtC : 256854 93 : roValSerPheCysValPheAlaThrValLysTyrSerTyrLeuAlaArgLysGlyAl : 111 ||:!!||| !!! :!!.!!::! !!.!!!.|||!!!! ||| ! !:!!||| roMetSerHisTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLy 256855 : CTATGAGCCATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAA : 256911 112 : aPheLeuGlnSerCysIleArgGlnLeuArgAsnAspTrpLysArgValGlnAspPro : 130 ! !:!!!::! !|||:!!..!!!.:!!..!!..||||||!:!! !|||::! ! sAspIleArgTyrCysValGluHisIleGluThrAspTrpArgMetValArgArgGlu 256912 : AGACATACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAG : 256968 131 : SerHisArgAlaIleMetLeuLysTyrAlaGlyValSerArgLysLeuIleThrValC : 150 !.! !!!:! !:!:|||:!!||| !!||| !! !!.!!||| ! :!! !||| !!| LysAspGlnGlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheC 256969 : AAGGATCAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTT : 257028 151 : ysAlaValPheIleTyrThrGlyGlyMetSerTyrHisThrValAlaGlnPheLeuSe : 169 |||||!.!.!!!!: ! !:!||| ... ::: ..! !:!! !.!. !!! ysAlaAlaIleMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAsnTh 257029 : GCGCAGCTATCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACAC : 257085 170 : rLys<-><->GluArgThrArgGluAsnTyrThrValArgProLeuAlaTyrIleGly : 186 !:!! .!. ! !!.!|||!.. ! !|||||| !||| !! !! !! ! rGluIleIleHisValGlyAsnGluThrThrIleValArgValLeuProValThrVal 257086 : GGAGATAATTCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTG : 257142 187 : TyrAspProPhePheAspThrGlnSerSerProThrTyrGluIleValPheLeuLeuH : 206 ||| ! !.!.!!.:!!..!.!...!||||||||| !!||||||||| !!!!!:!!! TyrLysLysLeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheMetG 257143 : TACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGC : 257202 207 : isCysPheAlaAlaMetIleMetTyrSerIleThrThrValAlaTyrGlyLeuAlaAl : 225 !. !!:::!!:!!!!:||| ! !!!!! !|||..! ! !!:!.!!|||||||| lnThrTrpSerSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAlaAl 257203 : AAACTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGC : 257259 226 : aValPheValThrHisValCysGlyGlnIleGlnIleGlnIleAlaArgLeuGlnAsn : 244 |||||||!.!||||||!.!! !||||||:!: :!:! !!::!! !!:!! !.!. aValPheAlaThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGlu 257260 : TGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAG : 257316 245 : LeuVal<->GluSerLysAspArgAspLeuPheSerValIleValHisAspHisAlaG : 263 !!!||| ||||||!:!:!!|||::: ..! !!!. !!.! PheValAsnGluSerArgAsnArgGluLysThrPheProPheLysGlnIleGlyValI 257317 : TTTGTGAATGAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGA : 257376 264 : luThrLeuLysIleLeuArgPheSerLysAsnIleGluAspAlaLeuTyrGlnIleCy : 282 ..! ! ! !|||||| ! !!:! ! ! ! !:!!! ! :!:!! leValGluHisHisLeuArgValLeuArg***AspPheCysIleIleSerValValTr 257377 : TTGTGGAGCATCATTTAAGAGTGCTGAGGTAAGATTTTTGCATTATTTCCGTTGTGTG : 257433 283 : sLeuThrGluIleValGluCysThrIleAsnMetCysMetLeuGluTyrTyrCysLeu : 301 ! !|||! |||... ! !||| ! !||| |||:!!!:!:!! !:!! pAsnPheGluArgValSerValIleIlePheAlaCys***LeuGlnPheHisIleIle 257434 : GAATTTCGAAAGGGTTTCTGTGATTATTTTTGCGTGTTAATTGCAGTTTCATATCATA : 257490 302 : ValGlu >>>> Target Intron 1 >>>> TrpAlaAsnSerAspLeuIleAl : 311 !..! 766 bp !::!!!!... ||| TyrArg+- ++GluTrpSerThrGlnAspIleGl 257491 : TATCGAgg.........................aggaATGGTCTACGCaagatattca : 258286 312 : aThrLeuThrTyrMetThrLeuLeuIle<->SerPheThrPheAsnIlePheIlePhe : 329 ...|||::: !:!!:!!:!! |||...:::||||||||||||:::... nAsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValIle 258287 : aaatttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaata : 258343 330 : CysTyrIleGlyGluLeuLeuSerGluGln >>>> Target Intron 2 >>>> : 340 |||||||||||||||:!!|||!!!|||||| 90 bp CysTyrIleGlyGluIleLeuThrGluGln++ + 258344 : tgttACATAGGTGAAATATTAACAGAACAGgt.........................a : 258464 341 : CysSerGluIleGlyThrValSerTyrGluIleAspTrpTyrAsnLeuProAlaLys : 358 |||!.!:!!:!!||| !||| !||| !! !||||||||| !!||||||! !||| +CysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspLys 258465 : gTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAA : 258520 359 : GluAlaTyrAspLeuIleLeuLeuIleSerIleSerGlnTyrProProLysLeuThrA : 378 ..! ! !||||||||||||:!!|||:!! !|||... ! !:!!:!!|||| ArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleThrA 258521 : AGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCG : 258580 379 : laGlyLysIleIleGluLeuSerLeuAsnThrPheSerSerValAlaLysThrSerLe : 397 ||||||||.........::!|||:!! !!|||||||||..!|||::! ! ! !!|| laGlyLysPhePheHisMetSerIleTyrThrPheSerAspValSerTyrLeuArgLe 258581 : CGggaaaattctttcacatGTCCATTTACACATTCAGCGATGTGAGTTATCTTCGTTT : 258637 398 : uVal : 398 |:!! uIle 258638 : GATT : 258642 vulgar: gi|815911906|ref|XP_012241394.1| 14 398 . KQ414889.1 256625 258642 + 440 M 26 78 G 1 0 M 129 387 G 0 6 M 76 228 G 0 3 M 57 171 5 0 2 I 0 762 3 0 2 M 17 51 G 0 3 M 19 57 5 0 2 I 0 86 3 0 2 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256626 258642 440 + . gene_id 5 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256626 257498 . + . KQ414889.1 exonerate:protein2genome:local exon 256626 257498 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 257499 257500 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local intron 257499 258264 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258642 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258642 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256626 258642 440 + . alignment_id 5 ; Query gi|815911906|ref|XP_012241394.1| ; Align 256626 15 78 ; Align 256704 42 387 ; Align 257097 171 228 ; Align 257328 247 171 ; Align 258265 304 51 ; Align 258319 321 57 ; Align 258466 340 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 413 Query range: 5 -> 202 Target range: 294633 -> 295227 6 : TyrThrIleGlyAspAspGlnLeuLysAsnAsnHisTyrGlnAsnAspIleGlnTyrT : 25 ||| !:!: ! |||::! !! !:!!:!! ! !!::!||||||:!: ! !!! TyrGluLeuLysIleAspArgThrMetAspAspThrAsnArgAsnAspValAlaAsnS 294634 : TACGAATTGAAAATAGACAGAACCATGGACGATACTAACAGAAACGACGTGGCGAACA : 294691 26 : hrLeuGlnMetCysGlnTrpLeuLeuLysLeuIleGlyIleTrpProLeuLeuAsnAs : 44 :!|||:!! |||!:! !!|||||||||! !||||||:!!|||||||||:!! !!!: erLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrSe 294692 : GCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACAG : 294748 45 : nHisThrSerArgLeuGluGlnLeuLeuSerIleValLeuMetIleThrCysTyrSer : 63 !|||||||||!:!|||.!.:!!:!!|||||||||:!!|||!!: !||| ! ! rHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLeu 294749 : TCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTTG : 294805 64 : SerIlePhePheIleIleLeuProSerGlyHisHisPhePhePheValGluLysAsnL : 83 !!!:!!.!.|||:!!:!!:!!|||!!!|||:!! !! ! ! ||| !! ||||||: ThrValLeuPheValLeuValProCysGlyTyrPheCysValPheHisValLysAsnV 294806 : ACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaacg : 294865 84 : euTyrMetLysMetLysMetLeuGlyProValSerPheCysValPheAlaThrValLy : 102 :: :::|||||||||:!:|||||||||||| !!:!! !:!!.!!:!!! !:!!!: alLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuAr 294866 : tgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCAG : 294922 103 : sTyrSerTyrLeuAlaArgLysGlyAlaPheLeuGlnSerCysIleArgGlnLeuArg : 121 !||||||! !|||!.! !||| ! !! !!!:!! !||||||..!.!.:!!..! gTyrSerCysLeuValLeuLysThrProAlaPheLysHisCysIleGluAspIleGlu 294923 : GTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGAG : 294979 122 : AsnAspTrpLysArgValGlnAspProSerHisArgAlaIleMetLeuLysTyrAlaG : 141 |||||||||||| !:!!.!.:!!|||..!|||||||||||||||:!!||| !!||| AsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIleMetIleLysAsnAlaM 294980 : AACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCGA : 295039 142 : lyValSerArgLysLeuIleThrValCysAlaValPheIleTyrThrGlyGlyMetSe : 160 !|||!!!!:!!:!:!!! !..!!.!! !.!!:!!.!.||||||!:!..!!.!:!!|| etValThrGlnArgMetThrValAlaPheThrIleIleIleTyrSerSerAlaValSe 295040 : TGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGTC : 295096 161 : rTyrHisThrValAlaGlnPheLeuSerLysGlu<->ArgThrArgGluAsnTyrThr : 178 |||||||.!!:!!!.. |||...|||... ..!!.!!:!:!!||| !!||| rTyrHisAlaIleValProPhePheSerAsnAlaLeuGluAsnLysLysAsnAsnThr 295097 : GTATCACGCCATTGtgccatttttttcaaacgctTTGGAGAACAAGAAGAATAATACG : 295153 179 : ValArgProLeuAlaTyrIleGlyTyrAspProPhePheAspThrGlnSerSerProT : 198 :!!||| !!||| !! ! !||||||!!: !||| ! |||.!! ! |||||||||| IleArgAlaLeuProIleProGlyTyrGluLeuPheValAspAlaTyrSerSerProT 295154 : ATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGTCCTA : 295213 199 : hrTyrGluIleVal : 202 |||||||||||:!! hrTyrGluIleIle 295214 : CCTACGAGATCATA : 295227 vulgar: gi|815911906|ref|XP_012241394.1| 5 202 . KQ414889.1 294633 295227 + 413 M 166 498 G 0 3 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294634 295227 413 + . gene_id 6 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294634 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294634 295227 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294634 295227 413 + . alignment_id 6 ; Query gi|815911906|ref|XP_012241394.1| ; Align 294634 6 498 ; Align 295135 172 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 365 Query range: 16 -> 249 Target range: 217153 -> 217855 17 : HisTyrGlnAsnAspIleGlnTyrThrLeuGlnMetCysGlnTrpLeuLeuLysLeuI : 36 .!.|||:::...:::|||... ::!:!!||| ! !!::||||||||||||! !! GluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProM 217154 : GAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGA : 217211 37 : leGlyIleTrpProLeuLeuAsnAsnHisThrSerArgLeuGluGlnLeuLeuSerIl : 55 !:|||:!!|||||| !:::..! !|||!!!|||! !..!:!!:!!|||! !! etGlyLeuTrpPro---AsnSerArgThrThrThrArgSerArgLysIleLeuTyrLy 217212 : TGGGTCTTTGGCCA---AACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAA : 217265 56 : eValLeuMetIleThrCysTyrSerSerIlePhePheIleIleLeuProSerGlyHis : 74 !:!!:!!! ! !||||||.!!! !||| !|||:!!.!!:!!|||!!!..! sLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMet 217266 : ACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATG : 217322 75 : HisPhePhePheValGluLysAsnLeuTyrMetLysMetLysMetLeuGlyProValS : 94 :!! ! |||.!!! !! :!!:!!|||||| |||:!!|||:!!!!!||||||:!!! TyrValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuI 217323 : TACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGA : 217382 95 : erPheCysValPheAlaThrValLysTyrSerTyrLeuAlaArgLysGlyAlaPheLe : 113 !|||||||||.!.||| !|||||||||! !! !||| ! ! ! !||| !:! lePheCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIl 217383 : TCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACAT : 217439 114 : uGlnSerCysIleArgGlnLeuArgAsnAspTrpLysArgValGlnAspProSerHis : 132 !!::..!|||:!:|||::!:!!..!...||||||!:!!.!|||::! ! !!.! !! eArgGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAsp 217440 : TCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGAC : 217496 133 : ArgAlaIleMetLeuLysTyrAlaGlyValSerArgLysLeuIleThrValCysAlaV : 152 |||! ! |||:!! ! !!|||..! !!.!!|||||||||:!! !:!!|||.!! ArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrP 217497 : AGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCT : 217556 153 : alPheIleTyrThrGlyGlyMetSerTyrHisThrValAlaGlnPheLeuSerLysGl : 171 !!|||!!:|||!:!||| ::: |||::: !!.! !! !.!! ! ! !.. hePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyAr 217557 : TCTTCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAG : 217613 172 : uArgThrArgGlu<-><->AsnTyrThrValArgProLeuAlaTyrIleGlyTyrAsp : 188 !! ! ! !||| ||| !||| !!! !||||||!.!!:! ! ! ! gIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLys 217614 : AATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAG : 217670 189 : ProPhePheAspThrGlnSerSerProThrTyrGluIleValPheLeuLeuHisCysP : 208 !.!!.!!||||||!::! !!!!|||||| !!||||||||||||!!!|||!!.! . TyrIleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuI 217671 : TATATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGA : 217730 209 : heAlaAlaMetIleMetTyrSerIleThrThrValAlaTyrGlyLeuAlaAlaValPh : 227 !!|||!.! :!:|||:!!.!!||||||:!!!.!|||! !.!!|||||||||!.!|| leAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPh 217731 : TCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTT : 217787 228 : eValThrHisValCysGlyGlnIleGlnIleGlnIleAlaArgLeuGlnAsnLeuVal : 246 |!.!..!|||!.!||||||||||||:!!:!: !!!: ! !!||||||:!!|||:!! eAlaValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIle 217788 : CGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATC : 217844 247 : GluSerLys : 249 !!:.!!!:! AspGlyArg 217845 : GACGGTAGA : 217855 vulgar: gi|815911906|ref|XP_012241394.1| 16 249 . KQ414889.1 217153 217855 + 365 M 24 72 G 1 0 M 134 402 G 0 6 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217154 217855 365 + . gene_id 7 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217154 217855 . + . KQ414889.1 exonerate:protein2genome:local exon 217154 217855 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217154 217855 365 + . alignment_id 7 ; Query gi|815911906|ref|XP_012241394.1| ; Align 217154 17 72 ; Align 217226 42 402 ; Align 217634 176 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 354 Query range: 17 -> 249 Target range: 221360 -> 222059 18 : TyrGlnAsnAspIleGlnTyrThrLeuGlnMetCysGlnTrpLeuLeuLysLeuIleG : 37 |||:!!!..:!!:!::!!! !:!:!!|||:!! !!!::|||:!!||||||! !|||| TyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleG 221361 : TACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCG : 221418 38 : lyIleTrpProLeuLeuAsnAsnHisThrSerArgLeuGluGlnLeuLeuSerIleVa : 56 ||:!!|||||| !! ! !||| ! !|||! !:!!|||::!! !|||! ! :! lyValTrpProAsnSerAlaAsn---IleSerThrValGluArgTyrLeuTyrTrpLe 221419 : GTGTTTGGCCAAATTCAGCCAAC---ATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 57 : lLeuMetIleThrCysTyrSerSerIlePhePheIleIleLeuProSerGlyHisHis : 75 !:!!! :!!..!||||||||| !||| |||:!!:!::!!|||!!!.!!! !:!! uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 76 : PhePhePheValGluLysAsnLeuTyrMetLysMetLysMetLeuGlyProValSerP : 95 ! .!!.!!! !! !:!!:!!:!!|||! !:!!!:|||:!!|||||||||:!!|||| ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 96 : heCysValPheAlaThrValLysTyrSerTyrLeuAlaArgLysGlyAlaPheLeuGl : 114 ||||||||.!.||| !:!!|||||| ! ||| !! ! ! ! ! ! !:!!!: heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 115 : nSerCysIleArgGlnLeuArgAsnAspTrpLysArgValGlnAspProSerHisArg : 133 :..!||||||..!!:::!!..! |||||||||!.!:!! !! !!!.! !!!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 134 : AlaIleMetLeuLysTyrAlaGlyValSerArgLysLeuIleThrValCysAlaValP : 153 ! !||||||:!!:!! !!||| ! !!.!!|||::!||||||! !:!!|||.!! !!| AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 154 : heIleTyrThrGlyGlyMetSerTyrHisThrValAlaGlnPhe<->LeuSerLysGl : 171 ||!!:|||!:!||| ::: |||::: !!.! !! !||| :!!.!!||| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 172 : uArgThrArgGlu<->AsnTyrThrValArgProLeuAlaTyrIleGlyTyrAspPro : 189 ! !.!!!:!!!: ||| ||| |||:!!!.!!:! ! !! ! eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 190 : PhePheAspThrGlnSerSerProThrTyrGluIleValPheLeuLeuHisCysPheA : 209 .!! !!||||||!:!! !||||||..! !!||||||:!!|||! !|||!!. !.!.| IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 210 : laAlaMetIleMetTyrSerIleThrThrValAlaTyrGlyLeuAlaAlaValPheVa : 228 ||!.! :!:|||:!!|||||||||:!!!.!|||! !.!!|||!.!|||:!!|||!. laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 229 : lThrHisValCysGlyGlnIleGlnIleGlnIleAlaArgLeuGlnAsnLeuValGlu : 247 !..!|||!.!|||||||||!!:|||:!: !!!:::! !!|||:!!:!!|||:!!.!. aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 248 : SerLys : 249 .!!::! GlyArg 222052 : GGCCGG : 222059 vulgar: gi|815911906|ref|XP_012241394.1| 17 249 . KQ414889.1 221360 222059 + 354 M 27 81 G 1 0 M 122 366 G 0 3 M 8 24 G 0 3 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221361 222059 354 + . gene_id 8 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221361 222059 . + . KQ414889.1 exonerate:protein2genome:local exon 221361 222059 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221361 222059 354 + . alignment_id 8 ; Query gi|815911906|ref|XP_012241394.1| ; Align 221361 18 81 ; Align 221442 46 366 ; Align 221811 168 24 ; Align 221838 176 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 351 Query range: 14 -> 247 Target range: 284496 -> 285207 15 : AsnAsnHisTyrGlnAsnAspIleGlnTyrThrLeuGlnMetCysGlnTrpLeuLeuL : 34 :!!::: !::.!.!..||| ..!|||!:!:!!|||||| !!::|||!!!|||| AspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuL 284497 : GATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCA : 284554 35 : ysLeuIleGlyIleTrpProLeuLeuAsnAsnHisThrSerArgLeuGluGlnLeuLe : 53 ||! !||||||:!!||||||||| ! ! ! |||!!! ! !:!! !! ysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSe 284555 : AACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTC : 284611 54 : uSerIleValLeuMetIleThrCysTyrSerSerIlePhePheIleIleLeuProSer : 72 ! !:!!:!! !:!:|||!:!|||!:! !! ! !|||.!!:!::!!! ! !:!! rValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAla 284612 : CGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCT : 284668 73 : GlyHisHisPhePhePheValGluLysAsnLeuTyrMetLysMetLysMetLeuGlyP : 92 ! ! ! .!! ! ! :!!||| !!! !|||!!:||||||:!!|||| LeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyP 284669 : CTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTC : 284728 93 : roValSerPheCysValPheAlaThrValLysTyrSerTyrLeuAlaArgLysGlyAl : 111 ||:!!|||||||||:!!.!.|||.!!:!!||||||! ! !||| ! !:::|||!. roLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGl 284729 : CTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGG : 284785 112 : aPheLeuGlnSerCysIleArgGlnLeuArgAsnAspTrpLysArgValGlnAspPro : 130 ! :!! ..!|||:!:!:!.!.:!!||| ||||||...! !..!! ...! ! yLysIleGlyGlnCysValLysAspIleArgAlaAspTrpSerLeuThrLeuSerHis 284786 : CAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCAT : 284842 131 : Ser<-><-><->HisArgAlaIleMetLeuLysTyrAlaGlyValSerArgLysLeuI : 147 ||| ...||| |||||| ! ! !||| !!:!!.!!|||...||| SerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuA 284843 : AGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGG : 284902 148 : leThrValCysAlaValPheIleTyrThrGlyGlyMetSerTyrHisThrValAlaGl : 166 ! ! !!||||||! !|||!!:|||:!!||||||.!.! !||| !|||||| !! laIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetPr 284903 : CGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCC : 284959 167 : nPheLeuSer<->LysGluArgThrArgGluAsnTyrThrValArgProLeuAlaTyr : 184 !!!.! !!!! ::: !..!! !! !!!:||| ! ||||||||| !!! !|||!:! oLeuCysThrValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPhe 284960 : GTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTC : 285016 185 : IleGlyTyrAspProPhePheAspThrGlnSerSerProThrTyrGluIleValPheL : 204 !||| ! !.!!.!!||| !!!::!!!||||||:!!!:!||||||||| ! ProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnP 285017 : CCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAAT : 285076 205 : euLeuHisCysPheAlaAlaMetIleMetTyrSerIleThrThrValAlaTyrGlyLe : 223 !!:!!!!.|||!!.||||||.!.:!!!!:||||||:!!|||..!! !|||! !.!!|| heMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLe 285077 : TCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTT : 285133 224 : uAlaAlaValPheValThrHisValCysGlyGlnIleGlnIleGlnIleAlaArgLeu : 242 ||||||||||||||||! !|||||||||||||||.!!::!|||! :!:.!!!:!||| uAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeu 285134 : GGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTG : 285190 243 : GlnAsnLeuValGlu : 247 .!.!!.||||||!!: AspLysLeuValAsp 285191 : GATAAGCTCGTCGAC : 285207 vulgar: gi|815911906|ref|XP_012241394.1| 14 247 . KQ414889.1 284496 285207 + 351 M 117 351 G 0 9 M 38 114 G 0 3 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284497 285207 351 + . gene_id 9 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284497 285207 . + . KQ414889.1 exonerate:protein2genome:local exon 284497 285207 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284497 285207 351 + . alignment_id 9 ; Query gi|815911906|ref|XP_012241394.1| ; Align 284497 15 351 ; Align 284857 132 114 ; Align 284974 170 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 341 Query range: 118 -> 301 Target range: 304410 -> 305035 119 : GlnLeuArgAsnAspTrpLysArgValGlnAspProSerHisArgAlaIleMetLeuL : 138 .!.||| !!.!! !:::!!!:!|||:!!..!! !!!! !!|||! !!!:||||||| AspLeuSerThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuL 304411 : GATCTCTCTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAA : 304468 139 : ysTyrAlaGlyValSerArgLysLeuIleThrValCysAlaValPheIleTyrThrGl : 157 |||||!.! !:!!.!!|||!!.|||! ! !:!!||||||:!!|||!!:|||||||| ysTyrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGl 304469 : AATACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGG : 304525 158 : yGlyMetSerTyrHisThrValAlaGlnPheLeuSerLysGluArgThrArgGlu<-> : 176 ||||! ! !|||||||||||| !|||||| !!!! ! ! !..! !||| yGlyThrIleTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyr 304526 : CGGCACCATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTAT : 304582 177 : AsnTyrThrValArgProLeuAlaTyrIleGlyTyrAspProPhePheAspThrGlnS : 195 ||| !|||:!!!:!||||||!.!||| ! !|||..! !!!!.||||||..!|||! AsnArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnT 304583 : AATCGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAA : 304642 196 : erSerProThrTyrGluIleValPheLeuLeuHisCysPheAlaAlaMetIleMetTy : 214 !!||||||! !||||||:!:|||!:!!!!:!!||||||.!...!!.! :!!!!:|| hrSerProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTy 304643 : CAAGCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTA : 304699 215 : rSerIleThrThrValAlaTyrGlyLeuAlaAlaValPheValThrHisValCysGly : 233 ||||||||||.!!! !|||! !||||||||||||:!!|||!.!||||||!.!|||||| rSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGly 304700 : TTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGA : 304756 234 : GlnIleGlnIleGlnIleAlaArgLeuGlnAsnLeuVal<-><-><->GluSerLysA : 250 ||||||.!.||| !!::!!|||||| :!!|||||| ||||||...| GlnIleAspIleValMetSerArgLeuGlyAspLeuValAsnSerLysGluSerSerA 304757 : CAAATTGATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCATCTG : 304816 251 : spArgAspLeuPheSerValIleValHisAspHisAlaGluThrLeuLys{Il} >> : 267 || !||| ! ! !:!! !:!! !!!:||| ! ! !:!! !{! } spLeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIleLeu{Se}++ 304817 : ATTTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTA{AG}gt.. : 304871 268 : >> Target Intron 1 >>>> {e}LeuArgPheSerLysAsnIleGluAspAla : 277 64 bp {!}! !||||||||| !! :!::!! !.! +-{r}TyrArgPheSerAlaIleValGlnThrVal 304872 : .......................at{T}TATAGATTCTCGGCAATAGTGCAAACAGTG : 304961 278 : LeuTyrGlnIleCysLeuThrGluIleValGluCysThrIleAsnMetCysMetLeuG : 297 ||| ! :!!:!!|||!!! !|||.!!:!!! ! !|||:!! !!:|||:!:|||| LeuGlnGluValCysPheLeuGluPheIleGlySerThrLeuLeuIleCysLeuLeuG 304962 : TTGCAAGAAGTATGCTTCTTGGAATTCATTGGTTCTACCTTACTGATATGTCTACTTG : 305021 298 : luTyrTyrCysLeu : 301 |||||||||||:!! luTyrTyrCysIle 305022 : AATACTACTGTATA : 305035 vulgar: gi|815911906|ref|XP_012241394.1| 118 301 . KQ414889.1 304410 305035 + 341 M 57 171 G 0 3 M 71 213 G 0 9 M 20 60 S 0 2 5 0 2 I 0 60 3 0 2 S 1 1 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304411 305035 341 + . gene_id 10 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 304411 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304411 304868 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304932 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304931 304932 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 304933 305035 . + . KQ414889.1 exonerate:protein2genome:local exon 304933 305035 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304411 305035 341 + . alignment_id 10 ; Query gi|815911906|ref|XP_012241394.1| ; Align 304411 119 171 ; Align 304585 176 213 ; Align 304807 247 60 ; Align 304934 268 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 339 Query range: 14 -> 247 Target range: 278549 -> 279260 15 : AsnAsnHisTyrGlnAsnAspIleGlnTyrThrLeuGlnMetCysGlnTrpLeuLeuL : 34 :!!::: !::.!.!..||| ..!|||!:!:!!|||||| !!::|||!!!|||| AspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuL 278550 : GATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCA : 278607 35 : ysLeuIleGlyIleTrpProLeuLeuAsnAsnHisThrSerArgLeuGluGlnLeuLe : 53 ||! !||||||:!!||||||||| ! ! ! |||!!! ! !:!! !! ysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSe 278608 : AACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTC : 278664 54 : uSerIleValLeuMetIleThrCysTyrSerSerIlePhePheIleIleLeuProSer : 72 ! !:!!:!! !:!:|||!:!|||!:! !! ! !|||.!!:!::!!! ! !:!! rValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAla 278665 : CGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCT : 278721 73 : GlyHisHisPhePhePheValGluLysAsnLeuTyrMetLysMetLysMetLeuGlyP : 92 ! ! ! .!! ! ! :!!||| !!! !|||!!:||||||:!!|||| LeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyP 278722 : CTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTC : 278781 93 : roValSerPheCysValPheAlaThrValLysTyrSerTyrLeuAlaArgLysGlyAl : 111 ||:!!|||||||||..!.!.||||||:!!||||||! ! !||| ! !:::|||!. roLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGl 278782 : CTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGG : 278838 112 : aPheLeuGlnSerCysIleArgGlnLeuArgAsnAspTrpLys<-><-><->ArgVal : 127 ! :!! !.!|||:!:!.!.!.:!!|||!..||||||... ! ! yLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyr 278839 : CAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTAT : 278895 128 : GlnAspProSerHisArgAlaIleMetLeuLysTyrAlaGlyValSerArgLysLeuI : 147 !::... ......||| |||||| ! ! !||| !!:!!.!!|||...||| ArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuA 278896 : CGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGG : 278955 148 : leThrValCysAlaValPheIleTyrThrGlyGlyMetSerTyrHisThrValAlaGl : 166 ! ! !! !!|||! !|||!!:|||:!!||||||:!:! !||| !.!!||| !! laIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetPr 278956 : CGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCC : 279012 167 : n<->PheLeuSerLysGluArgThrArgGluAsnTyrThrValArgProLeuAlaTyr : 184 ! ||| ! !::: !..!! !! !!!:||| ! ||||||||| !!! !|||!:! oLeuPheAlaValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPhe 279013 : GTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTC : 279069 185 : IleGlyTyrAspProPhePheAspThrGlnSerSerProThrTyrGluIleValPheL : 204 !||| ! !.!!.!!||| !!!::!!!||||||:!!!:!||||||||| ! ProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnP 279070 : CCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAAT : 279129 205 : euLeuHisCysPheAlaAlaMetIleMetTyrSerIleThrThrValAlaTyrGlyLe : 223 !!:!!!!.|||!!.||||||.!.:!!:!:||||||:!!|||..!! !|||! !.!!|| heMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLe 279130 : TCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTT : 279186 224 : uAlaAlaValPheValThrHisValCysGlyGlnIleGlnIleGlnIleAlaArgLeu : 242 | !||||||||||||! !|||||||||||||||.!!::!|||! :!:.!!!:!||| uIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeu 279187 : GATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTG : 279243 243 : GlnAsnLeuValGlu : 247 .!.!!.|||:!!!!: AspLysLeuIleAsp 279244 : GATAAGCTCATCGAC : 279260 vulgar: gi|815911906|ref|XP_012241394.1| 14 247 . KQ414889.1 278549 279260 + 339 M 111 333 G 0 9 M 41 123 G 0 3 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278550 279260 339 + . gene_id 11 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278550 279260 . + . KQ414889.1 exonerate:protein2genome:local exon 278550 279260 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278550 279260 339 + . alignment_id 11 ; Query gi|815911906|ref|XP_012241394.1| ; Align 278550 15 333 ; Align 278892 126 123 ; Align 279018 167 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 322 Query range: 11 -> 250 Target range: 212836 -> 213556 12 : GlnLeuLysAsnAsnHisTyrGlnAsnAspIleGlnTyrThrLeuGlnMetCysGlnT : 31 |||:!!:!!:!! ! !|||:!!!!. :::... :::::: ! ! !!::| GlnValGluAspCysThrTyrGluLysArgValAsnLeuSerIleProTrpAsnArgT 212837 : CAGGTCGAAGACTGTACCTACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTT : 212894 32 : rpLeuLeuLysLeuIleGlyIleTrpProLeuLeuAsnAsnHisThrSerArgLeuGl : 50 |||||||||||! !! |||:!:|||||| !!!.::!:!!..!|||! !:!!|| rpLeuLeuLysProThrGlyLeuTrpPro---AspLysSerTyrValSerProIleGl 212895 : GGCTTTTGAAACCAACGGGTTTGTGGCCC---GACAAGTCCTACGTTTCACCGATCGA : 212948 51 : uGlnLeuLeuSerIleValLeuMetIleThrCysTyrSerSerIlePhePheIleIle : 69 |:!! !:!!:!! !:!!:!!! ! !..!||||||.!!! !||| !!:!:!!:!! uLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLeuVal 212949 : GAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTA : 213005 70 : LeuProSerGlyHisHisPhePhePheValGluLysAsnLeuTyrMetLysMetLysM : 89 :!!|||!!!.!! :!! ! |||.!!! !! !:::|||:::::: ::::!::!!: IleProCysSerLeuTyrValPheLeuAspValGluAsnIlePheLysGluIleGluL 213006 : ATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaagagaTCGAAT : 213065 90 : etLeuGlyProValSerPheCysValPheAlaThrValLysTyrSerTyrLeuAlaAr : 108 !!!!!||| ! !!:!!||||||||| !||| ! !|||||| !! ||| !! euPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLe 213066 : TGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACT : 213122 109 : gLysGlyAlaPheLeuGlnSerCysIleArgGlnLeuArgAsnAspTrpLysArgVal : 127 ! ! |||! ! !:!!!::!!!|||:!!..!!!.:!!!:! !!|||||||||!.!:!! uHisGlyAspAspIleArgThrCysValGluHisMetLysTyrAspTrpLysAsnIle 213123 : TCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATC : 213179 128 : GlnAspProSerHisArgAlaIleMetLeuLysTyrAlaGlyValSerArgLysLeuI : 147 ! !! !..! !!!:!! !|||||| ! ! !!|||.!! !!.!!!:!!:!:!!: ThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleV 213180 : ACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAG : 213239 148 : leThrValCysAlaValPheIleTyrThrGlyGlyMetSerTyrHisThrValAlaGl : 166 !:|||:!!|||||| !!|||!!:||||||||| !! !! !||| ! !|||!.!! alThrIleCysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuValValPr 213240 : TGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACC : 213296 167 : nPheLeuSerLysGluArgThrArgGlu<-><->AsnTyrThrValArgProLeuAla : 183 !.!! !:!! ! :!!! !..! !||| ||| ||| !!|||! !:!!!.! oIleSerAlaAspLysMetValAlaGluAspLeuAsnValThrPheArgGlnMetVal 213297 : GATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTG : 213353 184 : TyrIleGlyTyrAspProPhePheAspThrGlnSerSerProThrTyrGluIleValP : 203 ! !! !! !.!! !!|||..!!:!! !||||||..! !!|||||| !!| ValProValSerArgPheIleValAspValArgTyrSerProValAsnGluIlePheP 213354 : GTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCT : 213413 204 : heLeuLeuHisCysPheAlaAlaMetIleMetTyrSerIleThrThrValAlaTyrGl : 222 |||||:!!!!. !.!.|||!.!:!::!:!!::!!:!!|||.!!..!||||||! !.! heLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSe 213414 : TCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAG : 213470 223 : yLeuAlaAlaValPheValThrHisValCysGlyGlnIleGlnIleGlnIleAlaArg : 241 !|||||||||||||||!.!..!|||!.!|||||||||!!: ||| !!!:::! !! rLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrp 213471 : CTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGG : 213527 242 : LeuGlnAsnLeuValGluSerLysAsp : 250 |||:!!:!!|||:!!!!:.!!!:!!!: LeuGluHisLeuIleAspGlyArgGlu 213528 : CTGGAACATTTGATAGACGGTAGAGAG : 213556 vulgar: gi|815911906|ref|XP_012241394.1| 11 250 . KQ414889.1 212836 213556 + 322 M 29 87 G 1 0 M 134 402 G 0 6 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212837 213556 322 + . gene_id 12 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212837 213556 . + . KQ414889.1 exonerate:protein2genome:local exon 212837 213556 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212837 213556 322 + . alignment_id 12 ; Query gi|815911906|ref|XP_012241394.1| ; Align 212837 12 87 ; Align 212924 42 402 ; Align 213332 176 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 315 Query range: 22 -> 246 Target range: 266634 -> 267309 23 : GlnTyrThrLeuGlnMetCysGlnTrpLeuLeuLysLeuIleGlyIleTrpProLeuL : 42 .!.|||!:!||||||:!! !!:!|||!!!||||||! !|||||| !||||||! !| AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProL 266635 : GATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGT : 266692 43 : euAsnAsnHisThrSerArgLeuGluGlnLeuLeuSerIleValLeuMetIleThrCy : 61 || :::! !||||||!:!||||||!:!:!!:!!||| !!.!|||!!::!!! !|| eu---SerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCy 266693 : TG---TCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTG : 266746 62 : sTyrSerSerIlePhePheIleIleLeuProSerGlyHisHisPhePhePheValGlu : 80 ||||!!!||||||.!.|||! !:!!:!!|||!!! ! !|||.!! !!.!.! !!!: sTyrCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAsp 266747 : CTACTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGAC : 266803 81 : LysAsnLeuTyrMetLysMetLysMetLeuGlyProValSerPheCysValPheAlaT : 100 :!!!:!:!! !! !|||:!!|||:!!!!!||||||:!!||| !!! !! !!!.! GluSerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyG 266804 : GAGAGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAG : 266863 101 : hrValLysTyrSerTyrLeuAlaArgLysGlyAlaPheLeuGlnSerCysIleArgGl : 119 !:!!!!.|||!!! ||| !! !:::.!! ! :!!!::.!!|||:!!..!!! lyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHi 266864 : GAATTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCA : 266920 120 : nLeuArgAsnAspTrpLysArgValGlnAspProSerHisArgAlaIleMetLeuLys : 138 .:!!!:!!..||||||!:!! !||| |||..! !!!:! !:!:||||||||| sMetGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLys 266921 : CATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAG : 266977 139 : TyrAlaGlyValSerArgLysLeuIleThrValCysAlaValPheIleTyrThrGlyG : 158 !!||| !!:!!.!!||| ! :!! !! ! !!||||||!.!|||!!: ! !|||! AsnAlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyV 266978 : AACGCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTG : 267037 159 : lyMetSerTyrHisThrValAlaGlnPheLeuSerLys<-><->GluArgThrArgGl : 175 !:!:.!!||| !..!:!!.!! !||| !! !:!! ||| ! !!.!|| alLeuGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGl 267038 : TTCTCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGA : 267094 176 : uAsnTyrThrValArgProLeuAlaTyrIleGlyTyrAspProPhePheAspThrGln : 194 |!.! ! !|||!.!! !||| !!! ! !! !||| ! !.!..!!! ..!.!. uThrArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAsp 267095 : GACTAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGAT : 267151 195 : SerSerProThrTyrGluIleValPheLeuLeuHisCysPheAlaAlaMetIleMetT : 214 !!!||||||||| !!|||||||||.!!:!!! !!!.! ! ! :!!!.!.!.|||:!! ThrSerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValA 267152 : ACCAGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGA : 267211 215 : yrSerIleThrThrValAlaTyrGlyLeuAlaAlaValPheValThrHisValCysGl : 233 !!|||! !..!..!! !|||!:!.!!|||||||||||||||!.!.!!|||!.!||||| snSerSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGl 267212 : ATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGG : 267268 234 : yGlnIleGlnIleGlnIleAlaArgLeuGlnAsnLeuVal : 246 ||||:!:...:!:! !!!: ! !!:!!:!!.!.!!!||| yGlnLeuSerValLeuMetMetTrpIleLysGluPheVal 267269 : ACAGCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTG : 267309 vulgar: gi|815911906|ref|XP_012241394.1| 22 246 . KQ414889.1 266634 267309 + 315 M 20 60 G 1 0 M 127 381 G 0 6 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266635 267309 315 + . gene_id 13 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266635 267309 . + . KQ414889.1 exonerate:protein2genome:local exon 266635 267309 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 266635 267309 315 + . alignment_id 13 ; Query gi|815911906|ref|XP_012241394.1| ; Align 266635 23 60 ; Align 266695 44 381 ; Align 267082 171 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 308 Query range: 17 -> 247 Target range: 259754 -> 260447 18 : TyrGlnAsnAspIleGlnTyrThrLeuGlnMetCysGlnTrpLeuLeuLysLeuIleG : 37 !:! !:! !!! !.!.|||!:!||||||.!. !!:!|||!!!||||||! !|||| PheThrSerHisSerAspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleG 259755 : TTCACTAGCCACAGTGACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAG : 259812 38 : lyIleTrpProLeuLeuAsnAsnHisThrSerArgLeuGluGlnLeuLeuSerIleVa : 56 || !|||||| ! !:::::! !|||!!!|||||||||:!!:!!:!!|||:!!:! lyAlaTrpPro---ProSerSerSerThrThrArgLeuGluLysIleIleSerValIl 259813 : GCGCTTGGCCA---CCTTCATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTAT : 259866 57 : lLeuMetIleThrCysTyrSerSerIlePhePheIleIleLeuProSerGlyHisHis : 75 !|||!!:.!!! !|||||||||!!!|||.!. !!! !:!::!!|||!!!! !! !||| eLeuIlePheIleCysTyrSerThrIleLeuValThrLeuIleProCysValLeuHis 259867 : CCTGATCTTTATCTGCTACAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCAC : 259923 76 : PhePhePheValGluLysAsnLeuTyrMetLysMetLysMetLeuGlyProValSerP : 95 .!..!..!!! !:!!:!!!:!||||||||||||! !|||:!!|||||||||:!!!!! MetLeuLeuGluLysGluSerLeuTyrMetLysThrLysValLeuGlyProLeuThrH 259924 : ATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCC : 259983 96 : heCysValPheAlaThrValLysTyrSerTyrLeuAlaArgLysGlyAlaPheLeuGl : 114 !!! !! !!!.! !:!!!!.|||!!! ||| ! !!:!||| ! !:!!! isTrpPheValGlyCysIleAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLe 259984 : ACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACT : 260040 115 : nSerCysIleArgGlnLeuArgAsnAspTrpLysArgValGlnAspProSerHisArg : 133 ||||||:!:..!!!.:!!..!|||||||||!:!! !:!! ! !!.! !!!:! uSerCysValGluHisValGluAsnAspTrpArgIleIleThrArgGluLysAspGln 260041 : TAGCTGCGTGGAACACGTGGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAG : 260097 134 : AlaIleMetLeuLysTyrAlaGlyValSerArgLysLeuIleThrValCysAlaValP : 153 !:!:||||||!:!|||||| ! !!.!!||| ! :!! !.!! !||||||!.!| AsnValMetLeuArgTyrAlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaP 260098 : AACGTGATGTTGAGATACGCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTT : 260157 154 : heIleTyrThrGlyGlyMetSerTyrHisThrValAlaGlnPheLeuSerLys<-><- : 171 ||:!: ! !|||! !:!!!!!!:! ! !|||.!! !!!. !!!!:!! heValGlnGlyGlyValLeuCysPheCysLeuValThrValLeuSerThrGluValIl 260158 : TCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGAT : 260214 172 : >GluArgThrArgGluAsnTyrThrValArgProLeuAlaTyrIleGlyTyrAspPro : 189 :!! ! !!.!|||!.. ! !|||!.!! !||| !!! ! ! !||| ! ! eGlnValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaValTyrLysGlu 260215 : ACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAG : 260271 190 : PhePheAspThrGlnSerSerProThrTyrGluIleValPheLeuLeuHisCysPheA : 209 .!..!.:!!..!.!...!||||||! ! !!|||||||||.!!:!!:!!!!.! ! !!: LeuIleAsnValAsnAspSerProMetAsnGluIleValLeuValValGlnPheValS 260272 : CTGATAAACGTGAACGACAGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCT : 260331 210 : laAlaMetIleMetTyrSerIleThrThrValAlaTyrGlyLeuAlaAlaValPheVa : 228 !!!.!.!.|||:!! !!|||! !|||..!! ! !!:!.!!||||||||||||.!... erGlyPheIleValAsnSerSerThrValGlyIlePheSerLeuAlaAlaValLeuTh 260332 : CGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGAC : 260388 229 : lThrHisValCysGlyGlnIleGlnIleGlnIleAlaArgLeuGlnAsnLeuValGlu : 247 !.!!|||!.!|||||||||:!:.!.:!:! !!:! ! !!:!! !.!.!!!|||!!: rAlaHisAlaCysGlyGlnLeuAsnValLeuMetGluTrpIleThrGluPheValAsp 260389 : CGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAATGGATCACGGAGTTTGTGGAC : 260445 vulgar: gi|815911906|ref|XP_012241394.1| 17 247 . KQ414889.1 259754 260447 + 308 M 23 69 G 1 0 M 129 387 G 0 6 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259755 260447 308 + . gene_id 14 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259755 260447 . + . KQ414889.1 exonerate:protein2genome:local exon 259755 260447 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 259755 260447 308 + . alignment_id 14 ; Query gi|815911906|ref|XP_012241394.1| ; Align 259755 18 69 ; Align 259824 42 387 ; Align 260217 171 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 306 Query range: 22 -> 237 Target range: 274380 -> 275028 23 : GlnTyrThrLeuGlnMetCysGlnTrpLeuLeuLysLeuIleGlyIleTrpProLeuL : 42 .!.|||!:!||||||:!! !!:!|||!!!||||||! !|||||| ||||||||| AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuA 274381 : GACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAG : 274438 43 : euAsnAsnHisThrSerArgLeuGluGlnLeuLeuSerIleValLeuMetIleThrCy : 61 ! :::! !|||!!!!:!!!!|||!:!:!!|||||| !:::|||:::... || la---SerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCy 274439 : CC---TCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttg : 274492 62 : sTyrSerSerIlePhePheIleIleLeuProSerGlyHisHisPhePhePheValGlu : 80 ||||!!!! !|||.!!! !! !:!!:!!|||||| ! !|||.!!.!..!.|||!!: sTyrCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAsp 274493 : ctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGAT : 274549 81 : LysAsnLeuTyrMetLysMetLysMetLeuGlyProValSerPheCysValPheAlaT : 100 :!!!:!|||:!!:!!|||:!!|||:!!|||||||||:!!.!! !!! !!.!!!.! GluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyG 274550 : GAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAG : 274609 101 : hrValLysTyrSerTyrLeuAlaArgLysGlyAlaPheLeuGlnSerCysIleArgGl : 119 !:!!!!.|||!!! ||| !! !:::.!! ! :!!!::.!!|||:!:..!!! lyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHi 274610 : GAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCA : 274666 120 : nLeuArgAsnAspTrpLysArgValGlnAspProSerHisArgAlaIleMetLeuLys : 138 .:!!!:!!..||||||!:!! !||| |||..! !!!:! !:!:||||||||| sMetGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLys 274667 : CATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAG : 274723 139 : TyrAlaGlyValSerArgLysLeuIleThrValCysAlaValPheIleTyrThrGlyG : 158 !!||| !:!!.!!||| ! :!! ! ! !!||||||!.!|||!!: ! !|||! AsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyV 274724 : AACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTG : 274783 159 : lyMetSerTyrHisThrValAlaGlnPheLeuSerLys<-><->GluArgThrArgGl : 175 !:!:!!!||| !..!:!!.!! !||| !! !:!! :!! ! !!.!|| alLeuCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGl 274784 : TTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGA : 274840 176 : uAsnTyrThrValArgProLeuAlaTyrIleGlyTyrAspProPhePheAspThrGln : 194 |!.! ||||||!.! !||| !!! !! !!.!||| ! !.!! !!! ..!.!. uThrArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAsp 274841 : GACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGAC : 274897 195 : SerSerProThrTyrGluIleValPheLeuLeuHisCysPheAlaAlaMetIleMetT : 214 !!!||||||||| !!|||||||||.!! !! !!!.! ! ! :!!!.!.!.|||:!! ThrSerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValA 274898 : ACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGA : 274957 215 : yrSerIleThrThrValAlaTyrGlyLeuAlaAlaValPheValThrHisValCysGl : 233 !!|||! !.!!..!! !|||!:!.!!|||||||||||||||!.!.!!|||!.!! !|| snSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGl 274958 : ATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGG : 275014 234 : yGlnIleGlnIle : 237 ||||:!:...:!: yGlnLeuSerVal 275015 : CCAGTTGAGCGTG : 275028 vulgar: gi|815911906|ref|XP_012241394.1| 22 237 . KQ414889.1 274380 275028 + 306 M 20 60 G 1 0 M 127 381 G 0 6 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274381 275028 306 + . gene_id 15 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274381 275028 . + . KQ414889.1 exonerate:protein2genome:local exon 274381 275028 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 274381 275028 306 + . alignment_id 15 ; Query gi|815911906|ref|XP_012241394.1| ; Align 274381 23 60 ; Align 274441 44 381 ; Align 274828 171 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 302 Query range: 14 -> 249 Target range: 226903 -> 227611 15 : AsnAsnHisTyrGlnAsnAspIleGlnTyrThrLeuGlnMetCysGlnTrpLeuLeuL : 34 .!.||| !!||||||.!. !!:!:.!. !:!:!!|||:!! !!::|||||||||| GluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuL 226904 : GAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGA : 226961 35 : ysLeuIleGlyIleTrpProLeuLeuAsnAsnHisThrSerArgLeuGluGlnLeuLe : 53 ||! !:!!|||||||||||| ! !:::..! ! !:!||||||:!!! !::!! !!! ysProLeuGlyIleTrpPro---SerSerArgLysSerSerArgIleGlyArgCysPh 226962 : AACCACTCGGTATCTGGCCG---TCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTT : 227015 54 : uSerIleValLeuMetIleThrCysTyrSerSerIlePhePheIleIleLeuProSer : 72 !||| :!!:!! .!! !||||||:!! !!!: !||| :!::!! !!||| eSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSer 227016 : CTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGC : 227072 73 : GlyHisHisPhePhePheValGluLysAsnLeuTyrMetLysMetLysMetLeuGlyP : 92 ||| :!! ! !!.!.! !! !|||..! !|||! ! !:!!||||||:!!|||| GlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyP 227073 : GGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTC : 227132 93 : roValSerPheCysValPheAlaThrValLysTyrSerTyrLeuAlaArgLysGlyAl : 111 ||:!!||||||! !!.!.!.:!! !:!!||||||||| |||.!! ! ! ! !! roMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAs 227133 : CGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGA : 227189 112 : aPheLeuGlnSerCysIleArgGlnLeuArgAsnAspTrpLysArgValGlnAspPro : 130 ! !:!!! ..!|||:!!..!!:!:!!!:! |||||||||!.!:!!::! !!! ! pAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeu 227190 : CGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTG : 227246 131 : SerHisArgAlaIleMetLeuLysTyrAlaGlyValSerArgLysLeuIleThrValC : 150 ..! !!||| !:!:|||:!!! !|||||| ! !.!!|||||||||||||||:!!| GluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleC 227247 : GAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTT : 227306 151 : ysAlaValPheIleTyrThrGlyGlyMetSerTyrHisThrValAlaGlnPheLeuSe : 169 ||.!! !!|||:!!!:!!::... ::: ::::::! !|||!.!! .!! !:! ysThrPhePheValPheSerSerPheValPhePheTyrIleValValProIleAsnAl 227307 : GCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGC : 227363 170 : rLysGluArgThrArgGlu<-><->AsnTyrThrValArgProLeuAlaTyrIleGly : 186 ! !... !.!!! !||| |||:!!!:! !! !! !:!! !!!:! ! aGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPhe 227364 : CGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTT : 227420 187 : TyrAspProPhePheAspThrGlnSerSerProThrTyrGluIleValPheLeuLeuH : 206 ! !.!! !|||..!!::! !|||||| ! !!|||||| !!|||! !:!!! ProLysIleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValG 227421 : CCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTAC : 227480 207 : isCysPheAlaAlaMetIleMetTyrSerIleThrThrValAlaTyrGlyLeuAlaAl : 225 !.! ! ! .!!!.!!!::!::!!:!!.!!:!!|||:!!!.!|||! !.!!:!!||||| lnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAl 227481 : AATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGC : 227537 226 : aValPheValThrHisValCysGlyGlnIleGlnIleGlnIleAlaArgLeuGlnAsn : 244 |:!!.!!!.!..!|||!.!|||||||||!!::!!:!: !:!::!! !!||| !:!! aLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHis 227538 : CCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACAT : 227594 245 : LeuValGluSerLys : 249 |||:!!!!:.!!!:! LeuIleAspGlyArg 227595 : TTGATCGACGGCAGA : 227611 vulgar: gi|815911906|ref|XP_012241394.1| 14 249 . KQ414889.1 226903 227611 + 302 M 26 78 G 1 0 M 134 402 G 0 6 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226904 227611 302 + . gene_id 16 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226904 227611 . + . KQ414889.1 exonerate:protein2genome:local exon 226904 227611 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226904 227611 302 + . alignment_id 16 ; Query gi|815911906|ref|XP_012241394.1| ; Align 226904 15 78 ; Align 226982 42 402 ; Align 227390 176 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 295 Query range: 279 -> 402 Target range: 286809 -> 287252 280 : GlnIleCysLeuThrGluIleValGluCysThrIleAsnMetCysMetLeuGluTyrT : 299 .!.:!:|||! ! !.!.! !||| !...! !||| .!. !|||! !..!! ! AspLeuCysTyrTyrHisThrValMetAlaIleIleAlaPheValMetTyrSerLeuS 286810 : GACTTGTGTTATTACCATACTGTAATGGCAATAATTGCATTCGTCATGTACTCGTTGT : 286867 300 : yrCysLeuValGluTrpAlaAsnSerAspLeuIleAlaThrLeuThrTyrMetThrLe : 318 !!!! !||||||! !.!.|||!!: !|||!.!|||:!!|||||| ||||| erValPhe***GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLe 286868 : CAGTTTTCTAGGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTT : 286924 319 : uLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuSer : 337 ||||:!!|||||||||||||||:!!||||||.!!|||||||||||||||:!!|||||| uLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSer 286925 : GCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCC : 286981 338 : GluGln >>>> Target Intron 1 >>>> CysSerGluIleGlyThrValSe : 347 |||||| 74 bp |||! !:!!:!!||| ! !!! GluGln++ ++CysLeuLysValGlyLeuSerTh 286982 : GAACaggt.........................agtGCTTAAAAGTCGGCTTGTCAAC : 287085 348 : rTyrGluIleAspTrpTyrAsnLeuProAlaLysGluAlaTyrAspLeuIleLeuLeu : 366 !||| !||||||||||||..!||||||!.!||| !||| ! ! !|||||||||:!! rTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIle 287086 : TTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATA : 287142 367 : IleSerIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleGluLeuSerL : 386 .!!:!!:!:|||.!.! ! !! !||||||||||||||||||||||||!!:||||||| PheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerL 287143 : TTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTT : 287202 387 : euAsnThrPheSerSerValAlaLysThrSerLeuValTyrLeuAsnLeu : 402 ||!:!!:!|||!!!||||||::!! ! !!:!||| !|||! !:!!||| euSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 287203 : TAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 287252 vulgar: gi|815911906|ref|XP_012241394.1| 279 402 . KQ414889.1 286809 287252 + 295 M 60 180 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286810 287252 295 + . gene_id 17 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286810 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286810 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286810 287252 295 + . alignment_id 17 ; Query gi|815911906|ref|XP_012241394.1| ; Align 286810 280 180 ; Align 287064 340 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 293 Query range: 279 -> 402 Target range: 280022 -> 280465 280 : GlnIleCysLeuThrGluIleValGluCysThrIleAsnMetCysMetLeuGluTyrT : 299 .!.:!!|||! ! !.!.|||||| !...! !||| .!. !|||! !..!! ! AspLeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerLeuS 280023 : GACTTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGTTGT : 280080 300 : yrCysLeuValGluTrpAlaAsnSerAspLeuIleAlaThrLeuThrTyrMetThrLe : 318 !!!! !||||||! !.!.!:!||| !|||!.!|||!!!||||||:!:! !!! erValPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPh 280081 : CAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTT : 280137 319 : uLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuSer : 337 !|||||||||!!.|||||||||:!!||||||.!!|||||||||||||||:!!|||||| eLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSer 280138 : TCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCC : 280194 338 : GluGln >>>> Target Intron 1 >>>> CysSerGluIleGlyThrValSe : 347 |||||| 74 bp |||! !:!!:!!|||..! !!! GluGln++ ++CysLeuLysValGlyValSerTh 280195 : GAACaggt.........................agTGCTTAAAAGTCGGCGTGTCAAC : 280298 348 : rTyrGluIleAspTrpTyrAsnLeuProAlaLysGluAlaTyrAspLeuIleLeuLeu : 366 !||| !||||||||||||..!||||||!.!|||:!!||| ! ! !|||||||||:!! rTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIle 280299 : TTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATA : 280355 367 : IleSerIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleGluLeuSerL : 386 .!!:!!:!:|||.!.! ! !! !||||||||||||||||||||||||!!:||||||| PheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerL 280356 : TTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTT : 280415 387 : euAsnThrPheSerSerValAlaLysThrSerLeuValTyrLeuAsnLeu : 402 ||!:!!:!|||!!!||||||::!! ! !!:!||| !|||! !:!!||| euSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280416 : TAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: gi|815911906|ref|XP_012241394.1| 279 402 . KQ414889.1 280022 280465 + 293 M 60 180 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280023 280465 293 + . gene_id 18 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280023 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280023 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280023 280465 293 + . alignment_id 18 ; Query gi|815911906|ref|XP_012241394.1| ; Align 280023 280 180 ; Align 280277 340 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 285 Query range: 295 -> 409 Target range: 297439 -> 297927 296 : LeuGluTyrTyrCysLeuValGluTrpAlaAsnSerAspLeuIleAlaThrLeuThrT : 315 |||:::|||::: ... !||| !!.! !|||:!!||| ! !:!!||| LeuLysTyrHisPhePheGlnGlyTrpLysThrHisAspMetIlePheGlyValThrI 297440 : ttaaaatatcatttttttcaggGATGGAAAACTCACGATATGATTTTTGGGGTAACGA : 297497 316 : yrMetThrLeuLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGl : 334 ! !!!!:!!:!!|||.!!|||||||||||||||:!!!!.|||:!! !||||| leGlyGlyPheMetLeuSerIleThrPheAsnIlePheValLeuCysHisAlaGlyGl 297498 : TCGGCGGTTTCATGCTTTCGATCACTTTTAATATATTCGTATTATGTCATGCAGGTGA : 297554 335 : uLeuLeuSerGluGln >>>> Target Intron 1 >>>> CysSerGluIleG : 344 ||||||| !|||:!! 73 bp ..!..!:!!.!!| uLeuLeuValGluGlu++ ++AlaGluLysPheG 297555 : ACTTCTTGTCGAGGAGgt.........................agGCTGAAAAATTCG : 297657 345 : lyThrValSerTyrGluIleAspTrpTyrAsnLeuProAlaLysGluAlaTyrAspLe : 363 ||!.!!.!:!!|||.!.|||!!:||||||||||||||| !!!!...!||| !||||| lyAsnAlaAlaTyrAsnIleGluTrpTyrAsnLeuProProAsnArgAlaLeuAspLe 297658 : GCAATGCAGCTTATAACATCGAATGGTACAACTTACCGCCAAACAGGGCTCTCGATCT : 297714 364 : uIleLeuLeuIleSerIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIle : 382 |:!:|||:!!|||.!!|||:!!:!!!:!||||||!:!||||||...|||||||||... uValLeuMetIleGlyIleAlaLysPheProProArgLeuThrGlyGlyLysIlePhe 297715 : GGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCACAggtggaaaaatattc : 297771 383 : GluLeuSerLeuAsnThrPheSerSer >>>> Target Intron 2 >>>> Va : 392 ::::::|||:!!||||||||||||:!! 73 bp || AspIleSerIleAsnThrPheSerAla++ ++Va 297772 : gatatatCGATAAACACGTTCAGTGCCgt.........................agGT : 297874 393 : lAlaLysThrSerLeuValTyrLeuAsnLeuLeuGlnThrValAlaAspTrp : 409 | !|||:!!|||:!!|||||||||||||||! !||||||:!!.!.:::||| lLeuLysSerSerValValTyrLeuAsnLeuTyrGlnThrMetThrGluTrp 297875 : ACTCAAATCATCGGTAGTTTACCTGAATTTATATCAAACAATGACcgaatgg : 297927 vulgar: gi|815911906|ref|XP_012241394.1| 295 409 . KQ414889.1 297439 297927 + 285 M 44 132 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 69 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297440 297927 285 + . gene_id 19 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 297440 297571 . + . KQ414889.1 exonerate:protein2genome:local exon 297440 297571 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 297572 297573 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 297572 297644 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 297643 297644 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 297645 297800 . + . KQ414889.1 exonerate:protein2genome:local exon 297645 297800 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 297801 297802 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 297801 297873 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 297872 297873 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 297874 297927 . + . KQ414889.1 exonerate:protein2genome:local exon 297874 297927 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297440 297927 285 + . alignment_id 19 ; Query gi|815911906|ref|XP_012241394.1| ; Align 297440 296 132 ; Align 297645 340 156 ; Align 297874 392 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 276 Query range: 269 -> 393 Target range: 234524 -> 235150 270 : PheSerLysAsnIleGluAspAlaLeuTyrGlnIleCysLeuThrGluIleValGluC : 289 |||! !::!|||||||||:!!!.!:!! !!! !|||||||||..!|||:!:|||! !| PheIleArgAsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuValGlyC 234525 : TTTATACGGAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGAT : 234582 290 : ysThrIleAsnMetCysMetLeuGluTyrTyrCysLeuVal >>>> Target Int : 303 |||||:!:||||||||||||||||||||||||! |||..! 189 b ysThrLeuAsnMetCysMetLeuGluTyrTyrLeuLeuThr++ 234583 : GCACGTTGAACATGTGCATGCTCGAGTATTATTTACTCACGgt............... : 234626 304 : ron 1 >>>> GluTrpAlaAsnSerAspLeuIleAlaThrLeuThrTyrMetThrL : 318 p ||| :::...... ||| !:!!|||:!:! !: ++GluLysSerLysGluLysLeu---------AlaSerTyrValIleV 234627 : ..........agGAAAAgtcgaaggaaaaatta---------gCTTCATACGTCATCG : 234849 319 : euLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuSe : 337 !!! !:!:|||.!.|||||||||||||||||||||||||||||||||||| !|||!! alTyrValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuTh 234850 : TGTACGTGTCCATGACATTtaatatattcatattttgttACATCGGAGAGACGCTTAC : 234906 338 : rGluGln >>>> Target Intron 2 >>>> CysSerGluIleGlyThrValS : 347 !|||||| 74 bp |||!!!:!!:!!||| ! ! rGluGln++ ++CysThrLysValGlyGluLysV 234907 : AGAGCAGgt.........................agTGTACCAAAGTCGGAGAAAAAG : 235010 348 : erTyrGluIleAspTrpTyrAsnLeuProAlaLysGluAlaTyrAspLeuIleLeuLe : 366 !||| !! !!!:||||||...|||||| !||| ||| !! !|||:!!:!!:! alTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIl 235011 : TGTACATGACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGAT : 235067 367 : uIleSerIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleGluLeuSer : 385 !||||||! |||... ! !|||:!!||||||||||||.!!:!!:!!:!!||| eIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheLeuGlnMetSer 235068 : CATCTCCAGGTCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCT : 235124 386 : LeuAsnThrPheSerSerValAla : 393 :!! ||||||.!!..!|||::! ValAlaThrPheGlyAspValSer 235125 : GTCGCAACATTTGGCGATGTGAGT : 235150 vulgar: gi|815911906|ref|XP_012241394.1| 269 393 . KQ414889.1 234524 235150 + 276 M 33 99 5 0 2 I 0 185 3 0 2 M 7 21 G 3 0 M 27 81 5 0 2 I 0 70 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234525 235150 276 + . gene_id 20 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234525 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234525 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235150 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235150 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234525 235150 276 + . alignment_id 20 ; Query gi|815911906|ref|XP_012241394.1| ; Align 234525 270 99 ; Align 234813 303 21 ; Align 234834 313 81 ; Align 234989 340 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 254 Query range: 302 -> 401 Target range: 291368 -> 292578 303 : GluTrpAlaAsnSerAspLeuIleAlaThrLeuThrTyrMetThrLeuLeuIleSerP : 322 ||||||! !!:!||||||! !|||!.!! !|||||||||:!:|||||||||! !|||| GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 323 : heThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuSerGluGlnCysSe : 341 ||||||||||||||.!.||||||||||||:!!|||||||||||| !! !||| || heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGlnValSe 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAGGTAAG : 291483 342 : rGlu{I} >>>> Target Intron 1 >>>> {le}GlyThrValSerTyrGlu : 349 | {:} 913 bp {!!}!.! !!.!||||||!!: rThr{V}++ +-{al}AlaHisAlaSerTyrAsp 291484 : TACT{G}gt.........................aa{TC}GCGCACGCTTCCTACGAT : 292420 350 : IleAspTrpTyrAsnLeuProAlaLysGluAlaTyrAspLeuIleLeuLeuIleSerI : 369 ! !!!:||||||||||||||| !::!:!!||| !|||:!!:!!|||:!!:!!:!!| ThrGluTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaI 292421 : ACAGAATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCA : 292480 370 : leSerGlnTyrProProLysLeuThrAlaGlyLysIleIleGluLeuSerLeuAsnTh : 388 ||!!!:!!:!!||| !|||||||||||||||||||||.!!! |||||||||||||| leThrLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnTh 292481 : TAACGAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACAC : 292537 389 : rPheSerSerValAlaLysThrSerLeuValTyrLeuAsn : 401 ||||.!!:!!||| !:!!:!!!.!||||||! :!!:!! rPheGlyAlaValArgGluSerLysLeuValLeuIleHis 292538 : TTTTGGCGCTGTACGTGAATCAAAACTAGTCTTGATACAC : 292578 vulgar: gi|815911906|ref|XP_012241394.1| 302 401 . KQ414889.1 291368 292578 + 254 M 40 120 S 0 1 5 0 2 I 0 909 3 0 2 S 1 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 292578 254 + . gene_id 21 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291369 291489 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291489 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291490 291491 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291490 292402 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 292401 292402 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 292403 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292403 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 292578 254 + . alignment_id 21 ; Query gi|815911906|ref|XP_012241394.1| ; Align 291369 303 120 ; Align 292405 344 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 240 Query range: 302 -> 404 Target range: 264537 -> 265001 303 : GluTrpAlaAsnSerAspLeuIleAlaThrLeuThrTyrMetThrLeuLeuIleSerP : 322 ||||||! !!:! |||::: !||||||.!.! !:!!|||||||||. GluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerM 264538 : GAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATACTGATATCAA : 264595 323 : heThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuSerGluGln >>> : 340 !. ! !|||||||||:!!.!.|||||||||||||||:!!|||!!!|||||| etCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGln++ 264596 : TGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcaggt... : 264651 341 : > Target Intron 1 >>>> CysSerGluIleGlyThrValSerTyrGluIleA : 351 78 bp |||!.!:!!:!!||| !||| !||| ! : ++CysLysLysValGlyGluValValTyrMetSerA 264652 : ......................agTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGA : 264760 352 : spTrpTyrAsnLeuProAlaLysGluAlaTyrAspLeuIleLeuLeuIleSerIleSe : 370 !!|||||| !!|||||| !|||!!: ! !||||||||||||:!!|||! !! !|| snTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLeuIleIleLeuArgSe 264761 : ATTGGTATTACTTACCCTACAAAGATATCCTTGATCTGATTCTCATCATTTTAAGATC : 264817 371 : rGlnTyrProProLysLeuThrAlaGlyLysIleIleGluLeuSerLeuAsnThrPhe : 389 |... ! !|||!!!|||||||||||||||:!!.!.:!!|||:!! !!|||||| rSerValValPheLysPheThrAlaGlyLysIleLeuHisMetSerMetTyrThrPhe 264818 : CAGCGTGGTGTTTAAATTCACCGCTGGAAAGATACTTCACATGTCCATGTACACATTC : 264874 390 : SerSer >>>> Target Intron 2 >>>> ValAlaLysThrSerLeuValTy : 399 |||..! 80 bp ||| !|||:!!|||!!!..!|| SerAsp++ ++ValIleLysSerSerPheThrTy 264875 : AGTGACgt.........................aggTAATCAAATCCTCTTTCACGTA : 264984 400 : rLeuAsnLeuLeuGln : 404 |||||||||||||!:: rLeuAsnLeuLeuArg 264985 : CTTAAACTTACTTCGC : 265001 vulgar: gi|815911906|ref|XP_012241394.1| 302 404 . KQ414889.1 264537 265001 + 240 M 37 111 5 0 2 I 0 74 3 0 2 M 52 156 5 0 2 I 0 76 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264538 265001 240 + . gene_id 22 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264538 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264726 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265001 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265001 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264538 265001 240 + . alignment_id 22 ; Query gi|815911906|ref|XP_012241394.1| ; Align 264538 303 111 ; Align 264727 340 156 ; Align 264963 392 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 220 Query range: 302 -> 392 Target range: 272836 -> 273176 303 : GluTrpAlaAsnSerAspLeuIleAlaThrLeuThrTyrMetThrLeuLeuIleSerP : 322 ||||||.!!:!! !|||!!! ::! ! !||||||.!.! !:!!|||||||||. GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 323 : heThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuSerGluGln >>> : 340 !.|||||||||||||||||| |||||||||||||||:!!|||!!!|||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 341 : > Target Intron 1 >>>> CysSerGluIleGlyThrValSerTyrGluIleA : 351 70 bp |||...:::|||||| !||| !||| !! : ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 352 : spTrpTyrAsnLeuProAlaLysGluAlaTyrAspLeuIleLeuLeuIleSerIleSe : 370 !!|||||| !!||||||!.!|||!!: ! !||||||||||||:!!||||||! !!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 371 : rGlnTyrProProLysLeuThrAlaGlyLysIleIleGluLeuSerLeuAsnThrPhe : 389 !... ! ! !|||:!!|||||||||!:!|||:!! :!!|||:!! !!|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 390 : SerSerVal : 392 .!!..!||| GlyAspVal 273166 : GGCGATGTA : 273176 vulgar: gi|815911906|ref|XP_012241394.1| 302 392 . KQ414889.1 272836 273176 + 220 M 37 111 5 0 2 I 0 66 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273176 220 + . gene_id 23 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273176 220 + . alignment_id 23 ; Query gi|815911906|ref|XP_012241394.1| ; Align 272837 303 111 ; Align 273018 340 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 216 Query range: 22 -> 251 Target range: 236849 -> 237533 23 : GlnTyrThrLeuGlnMetCysGlnTrpLeuLeuLysLeuIleGlyIleTrpProLeuL : 42 .!.|||!:!|||||| ! !!:!||| !:!!||| !||||||! !|||||| AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpPro---- 236850 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCA---- : 236904 43 : euAsnAsnHisThrSerArgLeuGluGlnLeuLeuSerIleValLeuMetIleThrCy : 61 .!. !:!!|||!.!||||||::! !:!!||| !:!!|||! :!:! !|| -----GlnPheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCy 236905 : -----CAGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTG : 236955 62 : sTyrSerSerIlePhePheIleIleLeuProSerGlyHisHisPhePhePheValGlu : 80 ||||!!!:!!|||.!.||| |||:!!|||!!!..! |||.!..!..!.! !:!! sTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLys 236956 : CTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAA : 237012 81 : LysAsnLeuTyrMetLysMetLysMetLeuGlyProValSerPheCysValPheAlaT : 100 !!.!!!!|||! !|||:!!|||!!:|||||| !!:!!||| !!! ||||||..!! GlyThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysI 237013 : GGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTA : 237072 101 : hrValLysTyrSerTyrLeuAlaArgLysGlyAlaPheLeuGlnSerCysIleArgGl : 119 !:!!!..|||!!! ||| !! !::! !! ! !:!!!:: !! !.!!!.!!! leIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHi 237073 : TCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCA : 237129 120 : nLeuArgAsnAspTrpLysArgValGlnAspProSerHisArgAlaIleMetLeuLys : 138 .:!!..!!.!||||||!:!! !..! ... ::: :::||||||||| sMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLys 237130 : TATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAG : 237186 139 : TyrAlaGlyValSerArgLysLeuIleThrValCysAlaValPheIleTyrThrGlyG : 158 |||||| ! !!|||||| ! ! ! ! !|||.!!:!!||||||:!! !||| TyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyI 237187 : TACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTA : 237246 159 : lyMetSerTyrHisThrValAlaGlnPheLeuSerLysGluArgThrArgGluAsnTy : 177 !:!:.!!||| !..!:!!.!! !! ! !!!!! !! !..! !! !||| ! leLeuGlyTyrCysValMetThrAlaSerThrThrMetValValValValGlyAsnLy 237247 : TACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAA : 237303 178 : rThr<-><->ValArgProLeuAlaTyrIleGlyTyrAspProPhePheAspThrGln : 194 ||| :!!||| !||| !!! ! !||| ! !.!!.!! ..!.!. sThrThrIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAsp 237304 : GACTACGATCTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGAT : 237360 195 : SerSerProThrTyrGluIleValPheLeuLeuHisCysPheAlaAlaMetIleMetT : 214 !!!!:! !!! ! !!!!:|||||| !!|||! !!!.! !.!!:!!!.!.!.||| ! ThrAsnThrMetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaA 237361 : ACGAATACTATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGA : 237420 215 : yrSerIleThrThrValAlaTyrGlyLeuAlaAlaValPheValThrHisValCysGl : 233 !!!:!! !.!!! ! !!.! .!!|||.!!::!!.!.!...!:!!|||!.!! !|| snAsnSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGl 237421 : ACAACAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGG : 237477 234 : yGlnIleGlnIleGlnIleAlaArgLeuGlnAsnLeuValGluSerLysAspArg : 251 ||||:!:...:!: !!: ! !:!!:!!:!!!!!|||.....! ! ||| yGlnLeuSerValValMetLeuSerIleGluAspPheValSerGluAlaArgArg 237478 : CCAGTTGAGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGC : 237533 vulgar: gi|815911906|ref|XP_012241394.1| 22 251 . KQ414889.1 236849 237533 + 216 M 18 54 G 3 0 M 135 405 G 0 6 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236850 237533 216 + . gene_id 24 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236850 237533 . + . KQ414889.1 exonerate:protein2genome:local exon 236850 237533 . + . insertions 6 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 236850 237533 216 + . alignment_id 24 ; Query gi|815911906|ref|XP_012241394.1| ; Align 236850 23 54 ; Align 236904 44 405 ; Align 237315 179 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 334 -> 393 Target range: 214848 -> 215025 335 : LeuLeuSerGluGlnCysSerGluIleGlyThrValSerTyrGluIleAspTrpTyrA : 354 :!!:!!! !:!!||||||!.!:!!:!!||| !||||||||| !|||!!:||||||. IleMetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrA 214849 : ATTATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACC : 214906 355 : snLeuProAlaLysGluAlaTyrAspLeuIleLeuLeuIleSerIleSerGlnTyrPr : 373 ..||||||!.!!!.:!! ! ! !! !||||||:!!!!::!!!!:|||.!.! ! rgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSe 214907 : GATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATC : 214963 374 : oProLysLeuThrAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSerSerVal : 392 ! !|||!!!|||||||||!!.!!::!!|||||||||:!!!:!||||||||||||||| rValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214964 : CGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215020 393 : Ala : 393 ::! Ser 215021 : AGT : 215025 vulgar: gi|815911906|ref|XP_012241394.1| 334 393 . KQ414889.1 214848 215025 + 146 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214849 215025 146 + . gene_id 25 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214849 215025 . + . KQ414889.1 exonerate:protein2genome:local exon 214849 215025 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214849 215025 146 + . alignment_id 25 ; Query gi|815911906|ref|XP_012241394.1| ; Align 214849 335 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 338 -> 398 Target range: 254271 -> 254451 339 : GlnCysSerGluIleGlyThrValSerTyrGluIleAspTrpTyrAsnLeuProAlaL : 358 ||||||! !:!!:!!||| !||| !||| !! !||||||||| !!|||||| !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 359 : ysGluAlaTyrAspLeuIleLeuLeuIleSerIleSerGlnTyrProProLysLeuTh : 377 :!..! ! !||||||||||||:!!|||!!! !|||.!. ! !:!!:!!|| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 378 : rAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSerSerValAlaLysThrSer : 396 |||||||||||||......:::|||||| !!||||||.!!..!|||::!:!!|||!:! rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 254443 397 : LeuVal : 398 |||||| LeuVal 254444 : CTTGTT : 254451 vulgar: gi|815911906|ref|XP_012241394.1| 338 398 . KQ414889.1 254271 254451 + 146 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254451 146 + . gene_id 26 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254451 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254451 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254451 146 + . alignment_id 26 ; Query gi|815911906|ref|XP_012241394.1| ; Align 254272 339 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 338 -> 397 Target range: 238625 -> 238802 339 : GlnCysSerGluIleGlyThrValSerTyrGluIleAspTrpTyrAsnLeuProAlaL : 358 ||||||! !:!!:!!||| !||| !||| !! !||||||||| !!|||||| !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 359 : ysGluAlaTyrAspLeuIleLeuLeuIleSerIleSerGlnTyrProProLysLeuTh : 377 :!..! ! !||||||||||||:!!|||!.! !|||.!. ! !|||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 378 : rAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSerSerValAlaLysThrSer : 396 ||||||||||:!!:!!.!.:!!|||||| !!||||||.!!..!|||::!:!!|||!:! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 397 : Leu : 397 ||| Leu 238798 : CTT : 238802 vulgar: gi|815911906|ref|XP_012241394.1| 338 397 . KQ414889.1 238625 238802 + 145 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238802 145 + . gene_id 27 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238802 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238802 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238802 145 + . alignment_id 27 ; Query gi|815911906|ref|XP_012241394.1| ; Align 238626 339 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 338 -> 398 Target range: 244655 -> 244835 339 : GlnCysSerGluIleGlyThrValSerTyrGluIleAspTrpTyrAsnLeuProAlaL : 358 ||||||! !:!!:!!||| !||| !||| !! !||||||||| !!|||||| !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 359 : ysGluAlaTyrAspLeuIleLeuLeuIleSerIleSerGlnTyrProProLysLeuTh : 377 :!..! ! !||||||||||||:!!|||!.! !|||.!. ! !:!!:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 378 : rAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSerSerValAlaLysThrSer : 396 ||||||||||:!!:!!.!.:!!|||||| !!||||||.!!..!|||::!:!!|||!.! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrLys 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAA : 244827 397 : LeuVal : 398 |||||| LeuVal 244828 : CTTGTT : 244835 vulgar: gi|815911906|ref|XP_012241394.1| 338 398 . KQ414889.1 244655 244835 + 145 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244835 145 + . gene_id 28 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244835 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244835 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244835 145 + . alignment_id 28 ; Query gi|815911906|ref|XP_012241394.1| ; Align 244656 339 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 294 -> 339 Target range: 214605 -> 214740 295 : MetLeuGluTyrTyrCysLeuValGluTrpAlaAsnSerAspLeuIleAlaThrLeuT : 314 :::::::::::: ||| |||||| !:::!:!:!!|||! !.!!|||:!!| IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 315 : hrTyrMetThrLeuLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGl : 333 |||||:!!..!|||! !||||||...|||||||||||||||||||||||||||||||| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 334 : yGluLeuLeuSerGluGln : 339 |||||||:!!||||||||| yGluLeuValSerGluGln 214721 : CGAGCTTGTGTCTGAACAG : 214740 vulgar: gi|815911906|ref|XP_012241394.1| 294 339 . KQ414889.1 214605 214740 + 141 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 214740 141 + . gene_id 29 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 214740 141 + . alignment_id 29 ; Query gi|815911906|ref|XP_012241394.1| ; Align 214606 295 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 336 -> 401 Target range: 230238 -> 230433 337 : SerGluGlnCysSerGluIleGlyThrValSerTyrGluIleAspTrpTyrAsnLeuP : 356 ||| !||||||!!!:!!:!!||| ! !|||||| !|||!!:||||||...||| SerLeuGlnCysArgLysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuT 230239 : tcCTTACAGTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAA : 230296 357 : roAlaLysGluAlaTyrAspLeuIleLeuLeuIleSerIleSerGlnTyrProProLy : 375 !!!.!!!.:!! ! ! !! !||||||:!!|||:!!!!:|||.!.! ! !! !!|| hrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLy 230297 : CCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAA : 230353 376 : sLeuThrAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSerSerValAlaLys : 394 |!!!|||||||||!!.!!::!!|||||||||:!!||||||||||||..!|||::!! sPheThrAlaGlyAsnMetValGluLeuSerValAsnThrPheSerAspValSerIle 230354 : ATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGACGTAAGTATC : 230410 395 : ThrSerLeuValTyrLeuAsn : 401 ! !! !! !|||||| !||| IlePheSerValTyrThrAsn 230411 : ATATTCTCTGTTTACACGAAT : 230433 vulgar: gi|815911906|ref|XP_012241394.1| 336 401 . KQ414889.1 230238 230433 + 140 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230239 230433 140 + . gene_id 30 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230239 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230239 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230239 230433 140 + . alignment_id 30 ; Query gi|815911906|ref|XP_012241394.1| ; Align 230239 337 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 302 -> 339 Target range: 219328 -> 219439 303 : GluTrpAlaAsnSerAspLeuIleAlaThrLeuThrTyrMetThrLeuLeuIleSerP : 322 |||||| !:::!:!|||:!!! ::!.!!:!!||||||!!:! !||||||||||||. GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 323 : heThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuSerGluGln : 339 !.||||||||||||||||||||||||||||||||||||:!!:!!:!!|||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: gi|815911906|ref|XP_012241394.1| 302 339 . KQ414889.1 219328 219439 + 135 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219439 135 + . gene_id 31 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219439 135 + . alignment_id 31 ; Query gi|815911906|ref|XP_012241394.1| ; Align 219329 303 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 302 -> 339 Target range: 224323 -> 224434 303 : GluTrpAlaAsnSerAspLeuIleAlaThrLeuThrTyrMetThrLeuLeuIleSerP : 322 ||||||::::::||| !!|||! !::!.!!:!!||||||.!.! !||||||!!:|||. GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 323 : heThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuSerGluGln : 339 ..|||||||||||||||||||||||||||||||||||||||:!!:!!|||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcag : 224434 vulgar: gi|815911906|ref|XP_012241394.1| 302 339 . KQ414889.1 224323 224434 + 134 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224434 134 + . gene_id 32 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224434 134 + . alignment_id 32 ; Query gi|815911906|ref|XP_012241394.1| ; Align 224324 303 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 337 -> 392 Target range: 277548 -> 277713 338 : GluGlnCysSerGluIleGlyThrValSerTyrGluIleAspTrpTyrAsnLeuProA : 357 ..!||||||!.!:!!:!!||| !||| !||| !! :!!|||||| !!||||||! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 358 : laLysGluAlaTyrAspLeuIleLeuLeuIleSerIleSerGlnTyrProProLysLe : 376 !|||!!: ! !:!!|||:!!|||:!!||||||! !|||... |||:: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 377 : uThrAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSerSerVal : 392 :||||||||||||:::|||::::::|||:!! !!||||||.!!..!||| eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspVal 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTA : 277713 vulgar: gi|815911906|ref|XP_012241394.1| 337 392 . KQ414889.1 277548 277713 + 131 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277713 131 + . gene_id 33 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277549 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277713 131 + . alignment_id 33 ; Query gi|815911906|ref|XP_012241394.1| ; Align 277549 338 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 302 -> 338 Target range: 228247 -> 228355 303 : GluTrpAlaAsnSerAspLeuIleAlaThrLeuThrTyrMetThrLeuLeuIleSerP : 322 |||||| ! !.!!!:|||! ! !.!!:!!|||||| .!!||||||:!!|||| GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerP 228248 : GAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCT : 228305 323 : heThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuSerGlu : 338 ||||||||||||||||||||||||||||||||||||||:!!:!!:!!||| heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGlu 228306 : TTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAA : 228355 vulgar: gi|815911906|ref|XP_012241394.1| 302 338 . KQ414889.1 228247 228355 + 124 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228248 228355 124 + . gene_id 34 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 228248 228355 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228355 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228248 228355 124 + . alignment_id 34 ; Query gi|815911906|ref|XP_012241394.1| ; Align 228248 303 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 297 -> 343 Target range: 261718 -> 261856 298 : TyrTyrCysLeuValGluTrpAlaAsnSerAspLeuIleAlaThrLeuThrTyrMetT : 317 :::::: ||| |||||||||.!...!|||:!! ! ! !! !||||||.!.! PhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheM 261719 : ttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCA : 261776 318 : hrLeuLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuLe : 336 !:!!||||||:!!.!! !||||||:!!||||||.!!|||||||||||||||:!!|| etMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLe 261777 : TGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACT : 261833 337 : uSerGluGlnCysSerGluIle : 343 |!!!|||||| ..!.!.:!: uThrGluGlnValGlnHisLeu 261834 : AACGGAACAGGTACAACATTTG : 261856 vulgar: gi|815911906|ref|XP_012241394.1| 297 343 . KQ414889.1 261718 261856 + 122 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261719 261856 122 + . gene_id 35 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 261719 261856 . + . KQ414889.1 exonerate:protein2genome:local exon 261719 261856 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 261719 261856 122 + . alignment_id 35 ; Query gi|815911906|ref|XP_012241394.1| ; Align 261719 298 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 294 -> 341 Target range: 305076 -> 305217 295 : MetLeuGluTyrTyrCysLeuValGluTrpAlaAsnSerAspLeuIleAlaThrLeuT : 314 .!.||| ||| !!!:|||! !!:!|||:!! !:!!::! ! !| PheLeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrT 305077 : TTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAA : 305134 315 : hrTyrMetThrLeuLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGl : 333 |||||! ..!|||||||||||| ! ||||||||||||||||||!!.||||||||||| hrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGl 305135 : CATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGG : 305191 334 : yGluLeuLeuSerGluGlnCysSer : 341 ||||:!!|||! !|||:!! ||| yGluIleLeuMetGluLysValSer 305192 : TGAGATTCTTATGGAAAAGGTGagt : 305217 vulgar: gi|815911906|ref|XP_012241394.1| 294 341 . KQ414889.1 305076 305217 + 122 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305077 305217 122 + . gene_id 36 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305077 305217 . + . KQ414889.1 exonerate:protein2genome:local exon 305077 305217 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305077 305217 122 + . alignment_id 36 ; Query gi|815911906|ref|XP_012241394.1| ; Align 305077 295 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 302 -> 339 Target range: 277371 -> 277482 303 : GluTrpAlaAsnSerAspLeuIleAlaThrLeuThrTyrMetThrLeuLeuIleSerP : 322 ||||||:!!:!!||||||:!! .!!! ! !|||:!!.!.! !:!!|||||||||. GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 323 : heThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuSerGluGln : 339 !. |||||||||||| ! ! |||||||||||||||:!!|||!!!|||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAG : 277482 vulgar: gi|815911906|ref|XP_012241394.1| 302 339 . KQ414889.1 277371 277482 + 111 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277482 111 + . gene_id 37 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277482 111 + . alignment_id 37 ; Query gi|815911906|ref|XP_012241394.1| ; Align 277372 303 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 337 -> 392 Target range: 283273 -> 283438 338 : GluGlnCysSerGluIleGlyThrValSerTyrGluIleAspTrpTyrAsnLeuProA : 357 ..!||||||!.!:!!:!!||| !||| !||| !! :!!! !!:! !!||||||! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 358 : laLysGluAlaTyrAspLeuIleLeuLeuIleSerIleSerGlnTyrProProLysLe : 376 !|||!!: ! !:!!|||:!!|||:!!||||||! !|||... |||:: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 377 : uThrAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSerSerVal : 392 :||||||...|||:::|||:::::!||| ! !!||||||..!..!||| eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspVal 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTA : 283438 vulgar: gi|815911906|ref|XP_012241394.1| 337 392 . KQ414889.1 283273 283438 + 104 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283438 104 + . gene_id 38 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283438 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283438 104 + . alignment_id 38 ; Query gi|815911906|ref|XP_012241394.1| ; Align 283274 338 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920800|ref|XP_003492337.2| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 77 -> 153 Target range: 279098 -> 279326 78 : ArgProValProIleLeuLeuMetThrAsnPheAlaGlnValIleAlaGlyTyrSerA : 97 ||| !! !||| !!! !!!:..!.!.||| !||| !:!:|||!.!!:! ! ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValL 279099 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTT : 279156 98 : laThrIleCysTyrThrThrValAspThrPheIleAlaMetLeuValLeuHisIleCy : 116 ! ! ! !..! !!.! !!:!!!.||||||:!!!!!|||:!!|||:!!|| euTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCy 279157 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTG : 279213 117 : sGlyGlnPheGluIleLeuArgLysLysLeuThrArgLeuLeuAspGlyGluGluGly : 135 ||||||||||..!|||||| !! !|||||| !!:!|||:!!||||||! !:!!||| sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLysGly 279214 : TGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGG : 279270 136 : AsnArgSerIleAspGluPheArgLysGluLeuValTrpIleIleThrLysHis : 153 !..!:!|||:!:..! ! !..!:!!..!|||! ! |||||| ! ! ||| ArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHis 279271 : AGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCAT : 279326 vulgar: gi|815920800|ref|XP_003492337.2| 77 153 . KQ414889.1 279098 279326 + 116 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 279099 279326 116 + . gene_id 1 ; sequence gi|815920800|ref|XP_003492337.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 279099 279326 . + . KQ414889.1 exonerate:protein2genome:local exon 279099 279326 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 279099 279326 116 + . alignment_id 1 ; Query gi|815920800|ref|XP_003492337.2| ; Align 279099 78 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920800|ref|XP_003492337.2| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 9 -> 153 Target range: 284838 -> 285273 10 : SerAlaLysThrGluGluGluLysThrAlaMetLeuLysMetAlaLysProAlaAsnP : 29 ||| !!.. |||||||||::: ||| ! ! ! |||!:! !!.!...! SerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgS 284839 : TCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGAT : 284896 30 : heIleSerValTrpCysSerIleLeuThrLeuThrMetValThrAlaTyrLeuSerLe : 48 !:!::!!:!!!::|||:!! !!!!! !! !:!! ! ! ! !||| !!!!:! erLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrVa 284897 : CTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGT : 284953 49 : uArgSerIleSerValTyrLeuSerAspArgLeuHisGluAsnArgAspHisLeuSer : 67 !! ! !!:!:!!!..! ! !!!!!!:! !:!! !!.!..!.! !! ...! !..! lMetProLeuCysThrValArgThrGluIleIleAspAsnGluThrValArgSerGln 284954 : GATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAA : 285010 68 : LeuTyrProGlyTyrPhePro<->TyrAsnIleArgProValProIleLeuLeuMetT : 86 !!:!||| !||| ! ! !:!! ||| !! !||| !!! !!!:. AlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleV 285011 : GCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCG : 285070 87 : hrAsnPheAlaGlnValIleAlaGlyTyrSerAlaThrIleCysTyrThrThrValAs : 105 .!.!.||| !||| !:!:|||!.!!:! ! ! ! ! !..! !!.! alGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCy 285071 : TGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTG : 285127 106 : pThrPheIleAlaMetLeuValLeuHisIleCysGlyGlnPheGluIleLeuArgLys : 124 !!:!!!. !|||:!!!!!|||:!!|||:!!||||||||||||..!|||||| !! ! sSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThr 285128 : CAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACA : 285184 125 : LysLeuThrArgLeuLeuAspGlyGluGluGlyAsnArgSerIleAspGluPheArgL : 144 |||||| !!:!|||:!!||||||! !:!!|||!..!:!.!!:!:..! ! !..!: LysLeuAspLysLeuValAspGlyValLysGlyArgLysGlyLeuSerThrHisGluG 285185 : AAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAAC : 285244 145 : ysGluLeuValTrpIleIleThrLysHis : 153 !!..!|||! ! |||||| ! ! ||| lnArgLeuGlyAspIleIleGluHisHis 285245 : AACGACTGGGAGATATCATCGAGCATCAT : 285273 vulgar: gi|815920800|ref|XP_003492337.2| 9 153 . KQ414889.1 284838 285273 + 111 M 65 195 G 0 3 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284839 285273 111 + . gene_id 2 ; sequence gi|815920800|ref|XP_003492337.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284839 285273 . + . KQ414889.1 exonerate:protein2genome:local exon 284839 285273 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284839 285273 111 + . alignment_id 2 ; Query gi|815920800|ref|XP_003492337.2| ; Align 284839 10 195 ; Align 285037 75 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920800|ref|XP_003492337.2| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 9 -> 153 Target range: 285841 -> 286276 10 : SerAlaLysThrGluGluGluLysThrAlaMetLeuLysMetAlaLysProAlaAsnP : 29 ||| !!.. |||||||||::: ||| ! ! ! |||!:! !!.!...! SerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgS 285842 : TCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGAT : 285899 30 : heIleSerValTrpCysSerIleLeuThrLeuThrMetValThrAlaTyrLeuSerLe : 48 !:!::!!:!!!::|||:!! !!!!! !! !:!! ! ! ! !||| !!!!:! erLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrVa 285900 : CTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGT : 285956 49 : uArgSerIleSerValTyrLeuSerAspArgLeuHisGluAsnArgAspHisLeuSer : 67 !! ! !!:!:!!!..! ! !!!!!!:! !:!! !!.!..!.! !! ...! !..! lMetProLeuCysThrValArgThrGluIleIleAspAsnGluThrValArgSerGln 285957 : GATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAA : 286013 68 : LeuTyrProGlyTyrPhePro<->TyrAsnIleArgProValProIleLeuLeuMetT : 86 !!:!||| !||| ! ! !:!! ||| !! !||| !!! !!!:. AlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleV 286014 : GCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCG : 286073 87 : hrAsnPheAlaGlnValIleAlaGlyTyrSerAlaThrIleCysTyrThrThrValAs : 105 .!.!.||| !||| !:!:|||!.!!:! ! ! ! ! !..! !!.! alGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCy 286074 : TGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTG : 286130 106 : pThrPheIleAlaMetLeuValLeuHisIleCysGlyGlnPheGluIleLeuArgLys : 124 !!:!!!. !|||:!!!!!|||:!!|||:!!||||||||||||..!|||||| !! ! sSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThr 286131 : CAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACA : 286187 125 : LysLeuThrArgLeuLeuAspGlyGluGluGlyAsnArgSerIleAspGluPheArgL : 144 |||||| !!:!|||:!!||||||! !:!!|||!..!:!.!!:!:..! ! !..!: LysLeuAspLysLeuValAspGlyValLysGlyArgLysGlyLeuSerThrHisGluG 286188 : AAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAAC : 286247 145 : ysGluLeuValTrpIleIleThrLysHis : 153 !!..!|||! ! |||||| ! ! ||| lnArgLeuGlyAspIleIleGluHisHis 286248 : AACGACTGGGAGATATCATCGAGCATCAT : 286276 vulgar: gi|815920800|ref|XP_003492337.2| 9 153 . KQ414889.1 285841 286276 + 111 M 65 195 G 0 3 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 285842 286276 111 + . gene_id 3 ; sequence gi|815920800|ref|XP_003492337.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 285842 286276 . + . KQ414889.1 exonerate:protein2genome:local exon 285842 286276 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 285842 286276 111 + . alignment_id 3 ; Query gi|815920800|ref|XP_003492337.2| ; Align 285842 10 195 ; Align 286040 75 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920796|ref|XP_012245315.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 322 -> 382 Target range: 234985 -> 235162 323 : GluSerThrGluIleAlaAsnThrAlaTyrTyrAlaGluTrpTyrAsnLeuProProL : 342 :!!!!!|||:!!:!!!.!.!.! !!.!||| .!!|||||||||...||||||! !| GlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProHisL 234986 : CAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATA : 235043 343 : ysSerAlaArgTrpLeuValIleIleMetCysArgAlaArgSerSerProLeuGlnIl : 361 ||!!!|||! ! ! ||||||!!:|||!!:! !|||:!! |||! ! !:!!:!!|| ysThrAlaLeuGlyLeuValMetIleIleSerArgSer---SerMetValIleLysIl 235044 : AAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCG---AGCATGGTGATAAAAAT : 235097 362 : eThrAlaGlyArgPheTyrTrpPheThrLeuAlaLeuTyrThrGlnValSerValAsn : 380 ||||||||||!:!||| .!.:!!:!!||| !!:! !.!.||||||:!!||| eThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspValSerIleAsn 235098 : CACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTGAGTATTAAT : 235154 381 : GluSer : 382 :!:::: LysThr 235155 : AAgaca : 235162 vulgar: gi|815920796|ref|XP_012245315.1| 322 382 . KQ414889.1 234985 235162 + 107 M 32 96 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234986 235162 107 + . gene_id 1 ; sequence gi|815920796|ref|XP_012245315.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234986 235162 . + . KQ414889.1 exonerate:protein2genome:local exon 234986 235162 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 234986 235162 107 + . alignment_id 1 ; Query gi|815920796|ref|XP_012245315.1| ; Align 234986 323 96 ; Align 235082 356 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1404 Query range: 0 -> 413 Target range: 303115 -> 305937 1 : MetPheThrSerThrArgLeuSerThrArgSerArgThrAspGlnSer<->ArgAsnP : 19 :!!! !|||!:!! !!.!||||||! !|||..!!:!! !|||!:!!.! |||||| LeuSerThrAsnMetHisLeuSerMetArgGluGlnIleAspArgLysProArgAsnL 303116 : CTGTCCACGAACATGCATCTCTCTATGCGAGAGCAGATCGATCGGAAACCGCGGAATT : 303173 20 : roAsnTyrGluGluAspIleIleTyrValThrLysHisAsnLysTrpValLeuAsnSe : 38 !||||||:!!:!!||||||:!!|||||||||||||||!:!||||||:!!|||!!.|| euAsnTyrLysLysAspIleValTyrValThrLysHisSerLysTrpIleLeuLysSe 303174 : TGAATTACAAGAAAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCCTGAAGTC : 303230 39 : rIleGlyIleTrpProAlaMetValGluGlyIleGlyLysPheLeuProArgIleAla : 57 |:!!|||||||||||||||:!!:!!!!:! !! !!.! !|||||||||!:!|||.!! rLeuGlyIleTrpProAlaValLeuAspGluThrAlaGlyPheLeuProLysIleThr 303231 : CCTTGGTATTTGGCCAGCCGTGTTGGACGAAACCGCAGGATTCCTACCAAAAATCACC : 303287 58 : IleGlyLeuSerAsnLeuIleLeuPhePheThrLeuValGlnCysValLeuHisIleV : 77 ||||||||||||||||||:!!|||!!.||||||:!!:!!! !|||:!!|||||||||: IleGlyLeuSerAsnLeuValLeuLeuPheThrValIleProCysIleLeuHisIleI 303288 : ATTGGACTCAGTAATTTGGTTCTATTATTCACCGTGATACCGTGTATTCTACACATAA : 303347 78 : alLeuGluGlnLysAspProLeuLeuArgLeuLysIleLeuGlyLeuThrCysPheSe : 96 !!!!!|||||||||||| !!:!!:!!|||||||||:!!!!!|||||| ! !!|||!! lePheGluGlnLysAspThrIleIleArgLeuLysLeuPheGlyLeuLeuSerPheCy 303348 : TATTCGAACAAAAGGATACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTG : 303404 97 : rPheIleSerLeuMetLysTyrTrpAlaLeuThrIleArgLysProLysIleGluTyr : 115 !!!.|||||||||||||||||||||||||||.!!! |||||||||!:!|||:!! ! sLeuIleSerLeuMetLysTyrTrpAlaLeuAlaThrArgLysProArgIleLysGlu 303405 : TTTGATCTCGTTGATGAAGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAA : 303461 116 : CysIleGluGlnLeuTyrAlaAspTrpLysGln >>>> Target Intron 1 >> : 127 |||||||||:!!:!! ! ::!|||||||||:!! 938 bp CysIleGluGluValGlnSerAspTrpLysGlu++ 303462 : TGTATAGAAGAGGTGCAAAGTGATTGGAAAGAGgt....................... : 303499 128 : >> IleGluTyrGlnArgAspArgLysLeuMetLeuLysTyrGlyLysIleGlyArg : 144 :!:|||! !! |||||||||:!!:!!|||||||||||||||:!!!!:|||||| ++ValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArg 303500 : ..agGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGA : 304486 145 : ArgLeuThrValTyrSerAlaValPheMetTyrSerGlyGlyIleIleTyrHisThrV : 164 !.!||||||:!! !!!!|||:!!|||||||||!!!||||||! !||||||||||||| AsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrV 304487 : AATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCACACGG : 304546 165 : alMetGlnTyrAlaIleGlySerTyrValAspGluPheAsnHisThrIleLysLeuLe : 183 ||||||||!:!|||! !|||!!!||||||||||||!:!|||!.!|||||||||! !|| alMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgThrIleLysProLe 304547 : TCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAACCGCT : 304603 184 : uValTyrProThrTyrSerGlyLeuTyrAspValGlnLysSerProValTyrGluLeu : 202 |||||||||||||||||||!.!|||!:!|||||||||! !||||||:!!||||||||| uValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLeu 304604 : CGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTG : 304660 203 : ValTyrValLeuGlnCysIleCysGlyTyrValPheAspThrValThrValGlyAlaC : 222 |||||| !!:!!!!.|||!!:||||||||||||.!! !!:!!:!!|||!.!||||||| ValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaC 304661 : GTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTT : 304720 223 : ysGlyLeuAlaAlaLeuPheAlaThrHisThrCysGlyGlnIleAspValIleMetSe : 241 |||||||||||||||||||||||||||||.!!|||||||||||||||:!!:!!||||| ysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSe 304721 : GCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTC : 304777 242 : rArgLeuAsnAspLeuIleAspGlyLysPheSerLysGluAsnSerAsnThrSerVal : 260 |||||||..!||||||:!!:!! |||||||||:::|||:!! !..! ! rArgLeuGlyAspLeuValAsn---------SerLysGluSerSerAspLeuAspLys 304778 : TCGATTGGGTGATCTTGTCAAC---------AGCAAAGAATCATCTGATTTAGATAAA : 304825 261 : ArgLeuMetGluIleValGluHisHisIleArgThrLeu{Ly} >>>> Target I : 274 ||||||!!:||||||||||||||||||:!:|||! !|||{!:} 70 ArgLeuIleGluIleValGluHisHisLeuArgIleLeu{Ar}++ 304826 : CGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTA{AG}gt............. : 304871 275 : ntron 2 >>>> {s}PheSerAlaMetValGluThrValLeuGlnGluValCysPh : 288 bp {!}|||||||||!!:|||:!!||||||||||||||||||||||| ++{g}PheSerAlaIleValGlnThrValLeuGlnGluValCysPh 304872 : ............ag{A}TTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTT : 304979 289 : eLeuGluPheIleGlyThrThrPheValMetCysLeuLeuGluTyrTyrCysIleThr : 307 ||||||||||||||||:!!|||!!.:!!!!:||||||||||||||||||||||||||| eLeuGluPheIleGlySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysIleThr 304980 : CTTGGAATTCATTGGTTCTACCTTACTGATATGTCTACTTGAATACTACTGTATAACG : 305036 308 : >>>> Target Intron 3 >>>> AspTrpGlnGlnAsnAsnLysIleGlyLe : 317 62 bp ||||||:!!...!:!|||! :!!.!!|| ++ ++AspTrpGluSerSerAsnThrValSerLe 305037 : gt.........................agGATTGGGAGAGCAGTAATACCGTTAGTCT : 305128 318 : uThrThrTyrSerLeuLeuLeuIleSerLeuThrPheAsnMetPheLeuLeuCysTyr : 336 ||||||||||!!!:!!||||||||||||:!!|||||||||!!:|||:!!||||||||| uThrThrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyr 305129 : TACAACATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTAC : 305185 337 : IleGlyAspLeuLeuIleGluLys >>>> Target Intron 4 >>>> SerTh : 346 ||||||!!::!!|||!!:|||||| 413 bp |||!: IleGlyGluIleLeuMetGluLys++ ++SerSe 305186 : ATTGGTGAGATTCTTATGGAAAAGgt.........................agAGCAG : 305628 347 : rAsnValGlyIleSerCysCysMetIleAspTrpTyrHisLeuProAlaLysSerVal : 365 !!:!||||||:!!||||||! !||||||..!|||||||||||||||.!!|||!!!:!! rSerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIle 305629 : TAGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATA : 305685 366 : GlnAspLeuValLeuIleIleAlaMetSerAsnAsnProAlaLysIleSerAlaGlyA : 385 !!.! !|||:!!||||||||||||||||||!:!||||||||||||||||||||||||! HisGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyL 305686 : CATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTA : 305745 386 : rgIleValAsnLeuSerLeuSerThrPheAlaSer >>>> Target Intron 5 : 397 :!:!!|||:!!||||||||||||||||||!.!!:! 106 bp ysValValAspLeuSerLeuSerThrPheGlyAsn++ 305746 : AAGTAGTTGATTTATCTTTATCCACATTTGGAAACgt..................... : 305783 398 : >>>> ValLeuLysThrSerPheAlaTyrLeuAsnPheLeuArgThrAlaLeuVal : 413 |||||||||||||||!!.|||||||||!:!||||||||||||.!!:!!:!! ++ValLeuLysThrSerLeuAlaTyrLeuSerPheLeuArgThrThrValIle 305784 : ....agGTTCTGAAAACGTCATTAGCGTATTTAAGTTTCCTTCGGACTACCGTTATA : 305937 vulgar: gi|815911898|ref|XP_012241390.1| 0 413 . KQ414889.1 303115 305937 + 1404 M 16 48 G 0 3 M 110 330 5 0 2 I 0 934 3 0 2 M 122 366 G 3 0 M 22 66 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 37 111 5 0 2 I 0 409 3 0 2 M 52 156 5 0 2 I 0 102 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303116 305937 1404 + . gene_id 1 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303116 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303116 303496 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304868 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 2 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305780 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305780 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305781 305782 . + . intron_id 5 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305781 305886 . + . intron_id 5 KQ414889.1 exonerate:protein2genome:local splice3 305885 305886 . + . intron_id 4 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305887 305937 . + . KQ414889.1 exonerate:protein2genome:local exon 305887 305937 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303116 305937 1404 + . alignment_id 1 ; Query gi|815911898|ref|XP_012241390.1| ; Align 303116 1 48 ; Align 303167 17 330 ; Align 304435 127 366 ; Align 304801 252 66 ; Align 304940 275 99 ; Align 305101 308 111 ; Align 305625 345 156 ; Align 305887 397 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 728 Query range: 14 -> 410 Target range: 278540 -> 280545 15 : GlnSerArgAsnProAsnTyrGluGluAspIleIleTyrValThrLysHisAsnLysT : 34 ..!|||! !:!! !!!..!::.!. !||| !!:||| !..!:!! |||:::| SerSerThrAspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgT 278541 : TCGTCAACCGATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTT : 278598 35 : rpValLeuAsnSerIleGlyIleTrpPro<-><->AlaMetValGluGlyIleGlyLy : 51 || !!|||!!. !!||||||:!!|||||| ! ||| !:!:! !|| rpPheLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLy 278599 : GGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAA : 278655 52 : sPheLeuProArgIleAlaIleGlyLeuSerAsnLeuIleLeuPhePheThrLeuVal : 70 |.!! ! !! !:!! ! !:!!||| !!!!:!::!! !||| !|||||| sIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuVal 278656 : GATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTA : 278712 71 : GlnCysValLeuHisIleValLeuGluGlnLysAspProLeu<->LeuArgLeuLysI : 89 ! !|||!.!||| !! !||||||!!::!!! ! ! !||| !!:!:!!|||! ProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysM 278713 : CCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAA : 278772 90 : leLeuGlyLeuThrCysPheSerPheIleSerLeuMetLysTyrTrpAlaLeuThrIl : 108 !::!!|||! ! ! !!|||!!! !!::!! !!!:||||||!:: !|||! ! etIleGlyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSe 278773 : TGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTC : 278829 109 : eArgLysProLysIleGluTyrCysIleGluGlnLeuTyrAlaAspTrpLys<-><-> : 126 ||| !||||||! ! |||:!:.!..!.:!! !.!!||||||... rArgGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThr 278830 : GCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACA : 278886 127 : <->GlnIleGluTyrGlnArgAspArgLysLeuMetLeuLysTyrGlyLysIleGlyA : 144 ..! !... :::...:::|||::::::||| ! ! !!.!!:!||||||| LeuSerTyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyA 278887 : CTTTCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGAC : 278946 145 : rgArgLeuThrValTyrSerAlaValPheMetTyrSerGlyGlyIleIleTyrHisTh : 163 || !|||.!!:!!!:!||||||! !||||||||||||||||||:!!.!!||| !.! rgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAl 278947 : GATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGC : 279003 164 : rValMetGlnTyrAlaIleGlySerTyrValAspGluPheAsnHisThrIleLysLeu : 182 !||||||! !! ! !! ! !! ! ! ! !|||.!.|||:!:!:!! ! aValMetProLeuPheAlaValArgThrGluIleIleAspAsnGluThrValArgSer 279004 : CGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCT : 279060 183 : LeuValTyrProThrTyrSerGlyLeuTyrAspValGlnLysSerProValTyrGluL : 202 ! !!.!!:!|||! !||| !!|||||| !||| !!::! |||||| !!:!|||: GlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluI 279061 : CAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGA : 279120 203 : euValTyrValLeuGlnCysIleCysGlyTyrValPheAspThrValThrValGlyAl : 221 !!||| ! !!:!!||||||:!:..!!.!!:!|||!!. !!:!!|||||||||||||| leValGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAl 279121 : TCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGC : 279177 222 : aCysGlyLeuAlaAlaLeuPheAlaThrHisThrCysGlyGlnIleAspValIleMet : 240 ||||.!!||| !|||:!!|||!.!! !|||..!|||||||||.!! :!!:!!:!! aCysSerLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuVal 279178 : TTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTG : 279234 241 : SerArgLeuAsnAspLeuIleAspGly<->LysPheSerLysGluAsnSerAsnThrS : 259 !!!!:!|||:!! ! |||||||||||| ||| !!!|||... |||!.. !. ThrLysLeuAspLysLeuIleAspGlyValLysGlyArgLysSerLeuSerThrHisG 279235 : ACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATG : 279294 260 : erValArgLeuMetGluIleValGluHisHisIleArgThrLeu{Ly} >>>> Tar : 274 .! !|||||| !!:|||:!!|||||||||:!:!:!! !|||{ } luGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 279295 : AACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt........ : 279343 275 : get Intron 1 >>>> {s}PheSerAlaMetValGluThrValLeuGlnGluVal : 286 571 bp { }|||! !:!!...:!!||| !:!!|||.!.|||:!! ++{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIle 279344 : .................ag{T}TTTATATCGCAAATCGAGGGGCTCCTGAACGAAATA : 279946 287 : CysPheLeuGluPheIleGlyThrThrPheValMetCysLeuLeuGluTyrTyrCysI : 306 ||||||:!!||| ! |||||| !|||!!. !!!:|||!!!||| !||||||! : CysPheValGluValIleGlyCysThrLeuAsnIleCysPheLeuThrTyrTyrLeuL 279947 : TGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGACATATTATTTAC : 280006 307 : leThr >>>> Target Intron 2 >>>> AspTrpGlnGlnAsnAsnLysIle : 315 !!||| 80 bp !!:|||:!!||||||:!! ||| euThr++ ++GluTrpGluGlnAsnAspAlaIle 280007 : TCACGgt.........................agGAATGGGAGCAAAATGACGCTATA : 280113 316 : GlyLeuThrThrTyrSerLeuLeuLeuIleSerLeuThrPheAsnMetPheLeuLeuC : 335 ||| ! !||||||! !:!!!!!|||||||||||||||||||||:!:|||:!!|||| GlyThrPheThrTyrLeuMetPheLeuIleSerLeuThrPheAsnValPheIleLeuC 280114 : GGAACGTTCACGTATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCT : 280173 336 : ysTyrIleGlyAspLeuLeuIleGluLys >>>> Target Intron 3 >>>> : 345 |||||||||||!!::!!||| !|||::: 74 bp ysTyrIleGlyGluIleLeuSerGluGln++ ++ 280174 : GTTACATCGGTGAAATTCTCTCCGAACaggt.........................ag : 280275 346 : SerThrAsnValGlyIleSerCysCysMetIleAspTrpTyrHisLeuProAlaLysS : 364 !!! !!!.||||||:!:||| !! !|||||||||||||||!.!||||||!.!|||! CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysL 280276 : TGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGA : 280334 365 : erValGlnAspLeuValLeuIleIleAlaMetSerAsnAsnProAlaLysIleSerAl : 383 .!!.!|||! !|||:!!||||||.!!|||:!!||||||::! !! !|||:!!!!!|| ysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 280335 : AAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 280391 384 : aGlyArgIleValAsnLeuSerLeuSerThrPheAlaSer >>>> Target Intr : 397 ||||!:!|||:!!:!!||||||||||||!:!|||..!||| 71 bp aGlyLysIleIleAspLeuSerLeuSerSerPheCysSer++ 280392 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt................ : 280435 398 : on 4 >>>> ValLeuLysThrSerPheAlaTyrLeuAsnPheLeuArgThr : 410 ||||||||||||:!!||||||||||||!:!!!.||||||||| ++ValLeuLysThrAlaPheAlaTyrLeuSerLeuLeuArgThr 280436 : .........agGTGTTAAAAACGGCATTCGCATATCTGAGCTTATTACGTACG : 280545 vulgar: gi|815911898|ref|XP_012241390.1| 14 410 . KQ414889.1 278540 280545 + 728 M 29 87 G 0 6 M 41 123 G 0 3 M 41 123 G 0 9 M 124 372 G 0 3 M 24 72 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278541 280545 728 + . gene_id 2 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278541 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278541 279340 . + . insertions 21 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280545 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280545 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278541 280545 728 + . alignment_id 2 ; Query gi|815911898|ref|XP_012241390.1| ; Align 278541 15 87 ; Align 278634 44 123 ; Align 278760 85 123 ; Align 278892 126 372 ; Align 279267 250 72 ; Align 279913 275 99 ; Align 280092 308 111 ; Align 280277 345 156 ; Align 280504 397 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 687 Query range: 14 -> 404 Target range: 284487 -> 287243 15 : GlnSerArgAsnProAsnTyrGluGluAspIleIleTyrValThrLysHisAsnLysT : 34 ...|||! !:!! !!!..!::!!: !||| !!:||| !..!:!! |||:::| SerSerThrAspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgT 284488 : TCTTCAACCGATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTT : 284545 35 : rpValLeuAsnSerIleGlyIleTrpPro<-><->AlaMetValGluGlyIleGlyLy : 51 || !!|||!!. !!||||||:!!|||||| ! ||| !:!:! !|| rpPheLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLy 284546 : GGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAA : 284602 52 : sPheLeuProArgIleAlaIleGlyLeuSerAsnLeuIleLeuPhePheThrLeuVal : 70 |.!! ! !! !:!! ! !:!!||| !!!!:!::!! !||| !|||||| sIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuVal 284603 : GATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTA : 284659 71 : GlnCysValLeuHisIleValLeuGluGlnLysAspProLeu<->LeuArgLeuLysI : 89 ! !|||!.!||| !! !||||||!!::!!! ! ! !||| !!:!:!!|||! ProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysM 284660 : CCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAA : 284719 90 : leLeuGlyLeuThrCysPheSerPheIleSerLeuMetLysTyrTrpAlaLeuThrIl : 108 !::!!|||! ! ! !!|||!!!.!.!!::!! !!!:||||||!:: !|||! ! etIleGlyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSe 284720 : TGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTC : 284776 109 : eArgLysProLysIleGluTyrCysIleGluGlnLeuTyrAlaAsp{Tr} >>>> T : 124 ||| !||||||! ! |||:!::!!.!.:!! !||||||{||} rArgGlyGlyLysIleGlyGlnCysValLysAspIleArgAlaAsp{Tr}++ 284777 : GCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGAC{TG}gt...... : 284828 125 : arget Intron 1 >>>> {p}LysGlnIleGluTyrGlnArgAspArgLysLeuM : 136 1012 bp {|} ..! !... :::...:::|||::::::| +-{p}LeuSerHisSerGlnGluGluGluArgGluIleM 284829 : ...................ac{G}CTTTCGCATAGtcaagaagaggagagagagatca : 285872 137 : etLeuLysTyrGlyLysIleGlyArgArgLeuThrValTyrSerAlaValPheMetTy : 155 || ! ! !!.!!:!||||||||| !|||.!!:!!!:!!!!|||! !|||||||| etArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTy 285873 : TGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTA : 285929 156 : rSerGlyGlyIleIleTyrHisThrValMetGlnTyrAlaIleGlySerTyrValAsp : 174 ||||||||||.!!.!!||| !|||||||||! !! ..!! !! ! !! ! ! ! rSerGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIle 285930 : TTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATC : 285986 175 : GluPheAsnHisThrIleLysLeuLeuValTyrProThrTyrSerGlyLeuTyrAspV : 194 !|||.!.|||:!:!:!! !! !!.!!:!|||! !||| !!|||||| !||| IleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspP 285987 : ATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATC : 286046 195 : alGlnLysSerProValTyrGluLeuValTyrValLeuGlnCysIleCysGlyTyrVa : 213 !!::! |||||| !!:!|||:!!||| ! !!:!!||||||:!:..!!.!!:!|| roArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheVa 286047 : CGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGT : 286103 214 : lPheAspThrValThrValGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisThr : 232 |.!. !!:!!||||||||||||||||||.!!|||||||||:!!|||!.!! !|||..! lIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisVal 286104 : TATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTC : 286160 233 : CysGlyGlnIleAspValIleMetSerArgLeuAsnAspLeuIleAspGly<->LysP : 251 |||||||||.!! :!!:!!:!!!!!!:!|||:!! ! |||:!!|||||| ||| CysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLysG 286161 : TGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAG : 286220 252 : heSerLysGluAsnSerAsnThrSerValArgLeuMetGluIleValGluHisHisIl : 270 !!!|||! ! |||!.. !..! !|||||| !!:|||:!!|||||||||:! lyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLe 286221 : GGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCT : 286277 271 : eArgThrLeu{Ly} >>>> Target Intron 2 >>>> {s}PheSerAlaMet : 278 :!:!! !|||{ } 408 bp { }|||! !:!!... uLysIleLeu{Gl}++ ++{y}PheIleSerGln 286278 : GAAGATACTG{GG}gt.........................ag{T}TTTATATCGCAA : 286709 279 : ValGluThrValLeuGlnGluValCysPheLeuGluPheIleGlyThrThrPheValM : 298 :!!||| !:!!|||.!.|||:!!||||||:!!||| ! |||||| !|||!!. !! IleGluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsnI 286710 : ATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACA : 286769 299 : etCysLeuLeuGluTyrTyrCysIleThr >>>> Target Intron 3 >>>> : 308 !:|||!!!|||! !||||||! :!:||| 80 bp leCysPheLeuGlyTyrTyrLeuLeuThr++ ++ 286770 : TATGCTTTTTGGGATATTATTTACTGACGgt.........................ag : 286877 309 : AspTrpGlnGlnAsnAsnLysIleGlyLeuThrThrTyrSerLeuLeuLeuIleSerL : 327 !!:|||:!!|||!:!.!.! |||||| !! !||||||!!! !||||||:!!|||! GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerP 286878 : GAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTT : 286936 328 : euThrPheAsnMetPheLeuLeuCysTyrIleGlyAspLeuLeuIleGluLys >>> : 345 !!|||||||||:!:|||:!!|||||||||||||||!!::!!||| !|||::: heThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286937 : TCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt... : 286992 346 : > Target Intron 4 >>>> SerThrAsnValGlyIleSerCysCysMetIleA : 356 74 bp !! !!!.||||||:!:||| !! !||||||| ++CysLeuLysValGlyLeuSerThrTyrMetIleA 286993 : ......................agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCG : 287097 357 : spTrpTyrHisLeuProAlaLysSerValGlnAspLeuValLeuIleIleAlaMetSe : 375 ||||||||!.!||||||!.!|||!!!!.!|||! !|||:!!||||||.!!|||:!!|| spTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSe 287098 : ACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTC : 287154 376 : rAsnAsnProAlaLysIleSerAlaGlyArgIleValAsnLeuSerLeuSerThrPhe : 394 ||||::! !! !|||:!!!!!||||||!:!|||:!!:!!||||||||||||!:!||| rAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPhe 287155 : GAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTC : 287211 395 : AlaSerValLeuLysThrSerPheAlaTyr : 404 ..!|||||| !! ! !!:!!!.:!!||| CysSerValSerIleIleAsnLeuSerTyr 287212 : TGCAGCGTGAGTATCATAAATTTATCCTAT : 287243 vulgar: gi|815911898|ref|XP_012241390.1| 14 404 . KQ414889.1 284487 287243 + 687 M 29 87 G 0 6 M 41 123 G 0 3 M 39 117 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 125 375 G 0 3 M 24 72 S 0 2 5 0 2 I 0 404 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284488 287243 687 + . gene_id 3 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284488 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284488 284825 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286698 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 4 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 3 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287243 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287243 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284488 287243 687 + . alignment_id 3 ; Query gi|815911898|ref|XP_012241390.1| ; Align 284488 15 87 ; Align 284581 44 123 ; Align 284707 85 117 ; Align 285839 125 375 ; Align 286217 250 72 ; Align 286700 275 99 ; Align 286879 308 111 ; Align 287064 345 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 519 Query range: 14 -> 397 Target range: 212836 -> 215022 15 : GlnSerArgAsnProAsnTyrGluGluAspIleIleTyrValThrLysHisAsnLysT : 34 ||| !..!:!! !!.!||||||:!! ::: ! |||:::| GlnValGluAspCysThrTyrGluLysArgValAsnLeuSerIleProTrpAsnArgT 212837 : CAGGTCGAAGACTGTACCTACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTT : 212894 35 : rpValLeuAsnSerIleGlyIleTrpPro<-><->AlaMetValGluGlyIleGlyLy : 51 ||:!!|||!!. !!! |||:!:|||||| :!! |||..! !|||! !|| rpLeuLeuLysProThrGlyLeuTrpProAspLysSerTyrValSerProIleGluLy 212895 : GGCTTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAA : 212951 52 : sPheLeuProArgIleAlaIleGlyLeuSerAsnLeuIleLeuPhePheThrLeuVal : 70 | !:!! !!|||:!:!.!! ! !:!!!!! !! !:!::!! !!:! !:!!:!! sAsnIleAlaArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIle 212952 : AAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATA : 213008 71 : GlnCysValLeuHisIleValLeuGluGlnLysAspProLeuLeuArgLeuLysIleL : 90 ! !||| !|||:!!:!: !!|||!!: !:::::: ... ...:!!:!!:!:! ProCysSerLeuTyrValPheLeuAspValGluAsnIlePheLysGluIleGluLeuP 213009 : CCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaagagaTCGAATTGT : 213068 91 : euGlyLeuThrCysPheSerPheIleSerLeuMetLysTyrTrpAlaLeuThrIleAr : 109 !!|||:!! !...|||!!! ! !:!!||| !|||||| :!!|||! !:!!!. heGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHi 213069 : TCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCA : 213125 110 : gLysProLysIleGluTyrCysIleGluGlnLeuTyrAlaAspTrpLysGlnIleGlu : 128 ! ! ! |||... |||:!!|||!!.:!! ! !|||||||||.!.||| ! sGlyAspAspIleArgThrCysValGluHisMetLysTyrAspTrpLysAsnIleThr 213126 : CGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACG : 213182 129 : TyrGlnArgAspArgLysLeuMetLeuLysTyrGlyLysIleGlyArgArgLeuThrV : 148 :!!:!!..!|||!:!:!!:!!||| ! ! !!!.!!...!!|||!:!|||:!!..!. HisGluGluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValT 213183 : CACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGA : 213242 149 : alTyrSerAlaValPheMetTyrSerGlyGlyIleIleTyrHisThrValMetGlnTy : 167 .! !!!!||| !!|||||||||!!!||| !! .!!||| ! !|||:!:! ! hrIleCysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuValValProIl 213243 : CAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGAT : 213299 168 : rAlaIleGlySerTyrVal<->AspGluPheAsnHisThrIleLysLeuLeuValTyr : 185 !::! ! !!.! ||| !!:!!:.!!||| |||.!!!:!! !:!!||| ! eSerAlaAspLysMetValAlaGluAspLeuAsnValThrPheArgGlnMetValVal 213300 : CAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTC : 213356 186 : ProThrTyrSerGlyLeuTyrAspValGlnLysSerProValTyrGluLeuValTyrV : 205 |||..!! !!! !:!! !||||||!:! ! ||||||||| !!|||:!! !!!:!: ProValSerArgPheIleValAspValArgTyrSerProValAsnGluIlePhePheL 213357 : CCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCT : 213416 206 : alLeuGlnCysIleCysGlyTyrValPheAspThrValThrValGlyAlaCysGlyLe : 224 !!:!!||| !|||..!||| :!!.!! !!.!!:!!.!!|||! !||||||.!!|| euIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSerLe 213417 : TGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTT : 213473 225 : uAlaAlaLeuPheAlaThrHisThrCysGlyGlnIleAspValIleMetSerArgLeu : 243 |||||||:!!||||||..!|||.!!|||||||||!!:! !:!!:!:|||||| !!||| uAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeu 213474 : GGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTG : 213530 244 : AsnAspLeuIleAspGlyLysPheSerLysGluAsnSerAsnThrSerValArgLeuM : 263 .!. !!||||||||||||!:! ..! ! !!:!!.!|||..!..!! !|||:!! GluHisLeuIleAspGlyArg---GluAspMetSerLysAsnValAspAspArgIleA 213531 : GAACATTTGATAGACGGTAGA---GAGGATATGAGCAAGAATGTGGACGACAGAATCG : 213587 264 : etGluIleValGluHisHisIleArgThrLeuLysPheSerAlaMetValGluThrVa : 282 !! ||||||.!.!!.|||:!:|||! !||||||!:: !! !:!! !! !! ! laValIleValAsnGlnHisValArgIleLeuLysTrpValGluLeuTrpValIle** 213588 : CGGTCATCGTGAACCAGCATGTGCGGATACTGAAGTGGGTGGAATTGTGGGTAATTTG : 213644 283 : lLeuGlnGluValCys >>>> Target Intron 1 >>>> PheLeuGluPheI : 292 !:!!:!!! !||| 908 bp *MetGluValValVal++ ++ArgThr***Lys* 213645 : AATGGAGGTGGTAGTGgt.........................agAggacataaaaat : 214582 293 : leGlyThrThrPheValMetCysLeuLeuGluTyrTyrCysIleThrAspTrpGlnGl : 311 ||| ::: :::::::::::: ::: :!:|||.!... **PheThrGlnAsnIleSerAsnIleValLysPheLeuIleLeu***GluTrpAsnSe 214583 : aattcacgcaaaatatatcaaacatcgtcaaatttttaatattataggAATGGAATTC : 214639 312 : nAsnAsnLysIleGlyLeuThrThrTyrSerLeuLeuLeuIleSerLeuThrPheAsn : 330 !|||||| !! ! ! !..!|||||| !:!!|||! !|||||||||||||||||| rAsnAsnLeuThrThrThrValThrTyrValValLeuTyrIleSerLeuThrPheAsn 214640 : GAACAATTTAACAACTACAGTAACTTACGTGGTGTTGTATATCTCTCtcactttcaat : 214696 331 : MetPheLeuLeuCysTyrIleGlyAspLeuLeuIleGluLys >>>> Target In : 345 :::|||:::...||||||||||||!!:|||:!! !|||:!! 123 IlePheIlePheCysTyrIleGlyGluLeuValSerGluGln++ 214697 : attttcatattttgttaCATAGGCGAGCTTGTGTCTGAACAGgt.............. : 214743 346 : tron 2 >>>> SerThrAsnValGlyIleSerCysCysMetIleAspTrpTyrHis : 359 bp !!!! !!!.|||||| ! !! ! !||||||!!:||||||!.. ++CysLysLysValGlyGluValSerTyrMetIleGluTrpTyrArg 214744 : ...........agTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACCGA : 214906 360 : LeuProAlaLysSerValGlnAspLeuValLeuIleIleAlaMetSerAsnAsnProA : 379 ||||||!.!!!.!.! !! !! !:!!||||||!!:||||||||||||::: !!! LeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSerV 214907 : TTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATCCG : 214966 380 : laLysIleSerAlaGlyArgIleValAsnLeuSerLeuSerThrPheAlaSerVal : 397 .!|||.!!!!!||||||!.!!!:|||.!.||||||:!!|||||||||::!|||||| alLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214967 : TCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215022 vulgar: gi|815911898|ref|XP_012241390.1| 14 397 . KQ414889.1 212836 215022 + 519 M 29 87 G 0 6 M 130 390 G 0 3 M 77 231 G 1 0 M 36 108 5 0 2 I 0 904 3 0 2 M 57 171 5 0 2 I 0 119 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212837 215022 519 + . gene_id 4 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212837 213661 . + . KQ414889.1 exonerate:protein2genome:local exon 212837 213661 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 213662 213663 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213662 214569 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214568 214569 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214570 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214570 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212837 215022 519 + . alignment_id 4 ; Query gi|815911898|ref|XP_012241390.1| ; Align 212837 15 87 ; Align 212930 44 390 ; Align 213323 174 231 ; Align 213554 252 108 ; Align 214570 288 171 ; Align 214864 345 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 476 Query range: 5 -> 409 Target range: 256589 -> 258729 6 : ArgLeuSerThrArgSerArgThrAspGlnSerArgAsnProAsnTyrGluGluAspI : 25 |||:!!||||||! !!!!!.! ! ! ! !!!. !!|||!:!:!!... !!! ArgMetSerThrMetThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrS 256590 : CGCATGAGCACGATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACA : 256647 26 : leIleTyrValThrLysHisAsnLysTrpValLeuAsnSerIleGlyIleTrpPro<- : 44 ! !||| ! !:!! |||::!||| !!|||!!. !!|||||| !|||||| erAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProPr 256648 : GCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACC : 256704 45 : ><->AlaMetValGluGlyIleGlyLysPheLeuProArgIleAlaIleGlyLeuSer : 61 :!! ..! ! !:!!! !::! !:!! !!! !:!! !! ! !:!!!!! oSerSerSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCys 256705 : CTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGC : 256761 62 : AsnLeuIleLeuPhePheThrLeuValGlnCysValLeuHisIleValLeuGluGlnL : 81 !! ! !:!!!!.|||||||||:!!! |||:!!||||||:!! !!|||!!:.!. TyrGlySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspA 256762 : TATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACG : 256821 82 : ysAspProLeuLeuArgLeuLysIleLeuGlyLeuThrCysPheSerPheIleSerLe : 100 ! ..! !! :::::::::||| ...|||! !! ! !! !!!!.!!||||||! spSerPheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCy 256822 : ACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTG : 256878 101 : uMetLysTyrTrpAlaLeuThrIleArgLysProLysIleGluTyrCysIleGluGln : 119 ! !!.||| ! !||| !:!!!:! ! ! ! |||...||||||:!!|||!!. sAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHis 256879 : TGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCAT : 256935 120 : LeuTyrAlaAspTrpLysGlnIleGluTyrGlnArgAspArgLysLeuMetLeuLysT : 139 :!! ! .!!||||||!:!..!:!:..! :!!!:!|||!:!:!!:!!|||:!!||| IleGluThrAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysA 256936 : ATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGA : 256995 140 : yrGlyLysIleGlyArgArgLeuThrValTyrSerAlaValPheMetTyrSerGlyGl : 158 !!!.!!:!.!!|||||| !:!!.!!..!!:!!!!|||!.!.!!||| ! |||||| snAlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyVa 256996 : ACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgt : 257052 159 : yIleIleTyrHisThrValMetGlnTyrAlaIleGly<->SerTyrValAspGluPhe : 176 ... ::: ..! ! ! ! !! ! ! ! !:!!|||! .!. lPheCysPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGlu 257053 : tttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAA : 257109 177 : AsnHisThrIleLysLeuLeuValTyrProThrTyrSerGlyLeuTyrAspValGlnL : 196 !.. ! !:!:::!:!!||| ! ! !!..!|||!.! !|||! :!!|||.!.: ThrThrIleValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspG 257110 : ACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATC : 257169 197 : ysSerProValTyrGluLeuValTyrValLeuGlnCysIleCysGlyTyrValPheAs : 215 !!||||||..! !!|||:!!||| ! !!:!!||| ! ! ..! !:!! lnSerProThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaTh 257170 : AGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGAC : 257226 216 : pThrValThrValGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisThrCysGly : 234 !||| !||||||.!! !! !.!!|||||||||:!!||||||||||||.!!! !||| rThrSerThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGly 257227 : TACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGT : 257283 235 : GlnIleAspValIleMetSerArgLeuAsnAspLeuIleAspGlyLysPheSerLysG : 254 |||:!: !|||:!!|||||| !!:!!!..!!:!!!:!::!!! !..! !:!:::| GlnLeuThrValLeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgG 257284 : CAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGgg : 257343 255 : luAsnSerAsnThrSerValArgLeuMetGluIleValGluHisHisIleArgThrLe : 273 ||...::: ! !!:!:!! ! !|||||||||||||||:!!|||..!|| luLysThrPheProPheLysGlnIleGlyValIleValGluHisHisLeuArgValLe 257344 : agaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCT : 257400 274 : u{Ly} >>>> Target Intron 1 >>>> {s}PheSerAlaMetValGluThr : 281 |{!:} 760 bp {!}! ! ! ! !.!. ! u{Ar}++ +-{g}CysValMetTyrArgAsnLeu 257401 : G{AG}gt.........................ac{G}TGCGTTATGTACCGAAACCTG : 258184 282 : ValLeuGlnGluValCysPheLeuGluPheIleGlyThrThrPheValMetCysLeuL : 301 :!!! !|||.!.! !! !! ! !:!! !..! ! !!.!. !! : LeuGlnGlnAsnGly***AsnArgThrTyrAsnAsnPheProIleHisSerTyrSerV 258185 : TTGCAACAAAATGGTTAAAATCGTACCTACAATAATTTTCCTATACACAGctattctg : 258244 302 : euGluTyrTyrCysIleThrAspTrpGlnGlnAsnAsnLysIleGlyLeuThrThrTy : 320 :: :::||| ... :::|||... !...::: ...|||::::::|| alIlePheTyrTyrPheGlnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerTy 258245 : ttattttttattattttcaggaATGGTCTACGCaagatattcaaaatttgagttcgta : 258301 321 : rSerLeuLeuLeuIleSerLeuThrPheAsnMetPheLeuLeuCysTyrIleGlyAsp : 339 |! !:!!:!!||||||||||||:::||||||:::|||::::::||||||||||||!!: rPheMetIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGlu 258302 : CTTTATGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAA : 258358 340 : LeuLeuIleGluLys >>>> Target Intron 2 >>>> SerThrAsnValGl : 349 :!!|||! !|||:!! 90 bp !!!! !!!.||||| IleLeuThrGluGln++ ++CysLysLysValGl 258359 : ATATTAACAGAACAGgt.........................agTGCAAGAAAGTTGG : 258478 350 : yIleSerCysCysMetIleAspTrpTyrHisLeuProAlaLysSerValGlnAspLeu : 368 | ! ! !! !|||! !|||||||||:!!||||||! !|||!!!:!!! |||||| yAspValValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeu 258479 : CGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTA : 258535 369 : ValLeuIleIleAlaMetSerAsnAsnProAlaLysIleSerAlaGlyArgIleValA : 388 :!!|||:!!|||||| |||!:! !!.!:!!|||!!!||||||:::... : IleLeuValIleAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePheH 258536 : ATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttc : 258595 389 : snLeuSerLeuSerThrPheAlaSer >>>> Target Intron 3 >>>> Val : 397 ::::!|||:!!! !||||||::!..! 69 bp ||| isMetSerIleTyrThrPheSerAsp++ ++Val 258596 : acatGTCCATTTACACATTCAGCGATgt.........................agGTA : 258691 398 : LeuLysThrSerPheAlaTyrLeuAsnPheLeuArg : 409 :!!||||||||||||||||||||||||!!.|||||| IleLysThrSerPheAlaTyrLeuAsnLeuLeuArg 258692 : ATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGT : 258729 vulgar: gi|815911898|ref|XP_012241390.1| 5 409 . KQ414889.1 256589 258729 + 476 M 38 114 G 0 6 M 127 381 G 0 3 M 103 309 S 0 2 5 0 2 I 0 756 3 0 2 S 1 1 M 70 210 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256590 258729 476 + . gene_id 5 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256590 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256590 257404 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 258164 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258163 258164 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 258165 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258165 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258729 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258729 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256590 258729 476 + . alignment_id 5 ; Query gi|815911898|ref|XP_012241390.1| ; Align 256590 6 114 ; Align 256710 44 381 ; Align 257094 171 309 ; Align 258166 275 210 ; Align 258466 345 156 ; Align 258691 397 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 476 Query range: 26 -> 409 Target range: 259772 -> 262192 27 : TyrValThrLysHisAsnLysTrpValLeuAsnSerIleGlyIleTrpPro<-><->A : 44 ||| ! !:!! !|||::!||| !!|||!!. !!|||||| !|||||| : TyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerS 259773 : TATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCAT : 259830 45 : laMetValGluGlyIleGlyLysPheLeuProArgIleAlaIleGlyLeuSerAsnLe : 63 !! ..! !!:!!! !|||.!!:!! !! !||| !||| !:!!!!! !! erSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSe 259831 : CCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAG : 259887 64 : uIleLeuPhePheThrLeuValGlnCysValLeuHisIleValLeuGluGlnLysAsp : 82 !! !:!!.!. !!||||||:!!! !||||||||||||!!::!!||||||:!!:!!..! rThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSer 259888 : TACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGT : 259944 83 : ProLeuLeuArgLeuLysIleLeuGlyLeuThrCysPheSerPheIleSerLeuMetL : 102 !! !:!!!:! !|||:!:||||||! ! ! ! !!!!|||:!!.!!! !!!:! LeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleA 259945 : TTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTA : 260004 103 : ysTyrTrpAlaLeuThrIleArgLysProLysIleGluTyrCysIleGluGlnLeuTy : 121 !.||| .!!||| !:!:||| ! ! ||| !|||:!:|||!!.:!! ! snTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGl 260005 : ATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGA : 260061 122 : rAlaAspTrpLysGlnIleGluTyrGlnArgAspArgLysLeuMetLeuLysTyrGly : 140 !||||||!:! ||| ! :!!!:!|||!:!!!.:!!||||||!:!|||!.! uAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAla 260062 : GAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCG : 260118 141 : LysIleGlyArgArgLeuThrValTyrSerAlaValPheMetTyrSerGlyGlyIleI : 160 |||.!!|||||| !:!!.!!!.!! !!!!|||!.!|||:!! ! .!!|||! !:!: LysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuC 260119 : AAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGT : 260178 161 : leTyrHisThrValMetGlnTyrAlaIleGly<->SerTyrValAspGluPheAsnHi : 178 !!:! ! !|||! ! !! ::!! !! ! ! ! ! |||! .!. !.... ysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrAr 260179 : GCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAG : 260235 179 : sThrIleLysLeuLeuValTyrProThrTyrSerGlyLeuTyrAspValGlnLysSer : 197 .! !:!! ! |||||| !! ! !!..!|||!.!! !||| :!!|||.!. ! ||| gIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSer 260236 : GATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGT : 260292 198 : ProValTyrGluLeuValTyrValLeuGlnCysIleCysGlyTyrValPheAspThrV : 217 |||:!! !!|||:!!||| !|||:!!|||! !:!!! |||!:!:!! ! :!!:!! ProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerS 260293 : CCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGA : 260352 218 : alThrValGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisThrCysGlyGlnIl : 236 !||||||||| !! !.!!|||||||||:!!.!..!!.!!|||.!!|||||||||:! erThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLe 260353 : GCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTT : 260409 237 : eAspValIleMetSerArgLeuAsnAspLeuIleAspGlyLysPheSerLysGluAsn : 255 ::!!|||:!!|||..! !!:!!!..!!:!!!:!:|||! !..! !:!!:!:!!!!. uAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLys 260410 : GAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAA : 260466 256 : SerAsnThrSerValArgLeuMetGluIleValGluHisHisIleArgThrLeuLysP : 275 !.! ! !!! ! !..!:!! ! !|||||||||||||||:!:|||.!!|||! !! LysAlaProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeuThr* 260467 : AAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTCACGT : 260526 276 : heSerAlaMetValGluThrValLeuGlnGluValCysPheLeuGluPheIleGlyTh : 294 ..! !.!.! ! ||| !!:!!!:! !! ! !|||:!! :!!|||:! **AspLeuPheAspIleThrPheValArg***ArgIlePheIleIleThrValGlySe 260527 : AAGATTTGTTTGATATTACTTTTGTACGATAAAGGATTTTTATAATTACGGTAGGATC : 260583 295 : rThrPheValMetCysLeu{Le} >>>> Target Intron 1 >>>> {u}Glu : 302 !|||...::: |||{:!} 1109 bp {!} rThrIleIle***LysLeu{Il}++ -+{e}Tyr 260584 : Tactataatttgaaaatta{at}gt.........................tg{a}tat : 261716 303 : TyrTyrCysIleThrAspTrpGlnGlnAsnAsnLysIleGlyLeuThrThrTyrSerL : 322 :::::: ::: !!:||| :!!.!.:!!! ! !..!|||:!!||||||! !: PhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheM 261717 : ttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCA : 261776 323 : euLeuLeuIleSerLeuThrPheAsnMetPheLeuLeuCysTyrIleGlyAspLeuLe : 341 !!:!!||||||:!!:!! !||||||:!:|||:!!:!!||||||||||||!!::!!|| etMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLe 261777 : TGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACT : 261833 342 : uIleGluLys >>>> Target Intron 2 >>>> SerThrAsnValGlyIleS : 351 |! |||:!! 81 bp !!!:!!!!.|||||| ! uThrGluGln++ ++CysSerLysValGlyAspV 261834 : AACGGAACAGgt.........................agTGCTCGAAAGTTGGTGACG : 261944 352 : erCysCysMetIleAspTrpTyrHisLeuProAlaLysSerValGlnAspLeuValLe : 370 ! !! !|||! !:!!||||||:!!||||||! !||||||:!!! ||||||:!!|| alValTyrMetThrAsnTrpTyrTyrLeuProAspLysSerIleLeuAspLeuIleLe 261945 : TTGTTTACATGACAAACTGGTATTATTTACCTGATAAAAGTATCCTTGATTTGATTTT : 262001 371 : uIleIleAlaMetSerAsnAsnProAlaLysIleSerAlaGlyArgIleValAsnLeu : 389 |||||||||| !!!!. |||!.!!!. ! ! ! !!|||.!!..!..!! ! uIleIleAla---ArgLysProProGlyAsn***PheLysCysArgPheThrArgSer 262002 : GATCATTGCA---CGAAAACCGCCGGGAAATTAGTTCAAATGTCGGTTTACACGTTCG : 262055 390 : Ser{Le} >>>> Target Intron 3 >>>> {u}SerThrPheAlaSerValL : 398 :!!{:!} 75 bp {!} !! !.!. !..!|||: Ala{Il}++ ++{e}ProLeuIlePheGlnValV 262056 : GCG{AT}gt.........................ag{T}CCGTTGATATTCCAGGTGG : 262157 399 : euLysThrSerPheAlaTyrLeuAsnPheLeuArg : 409 !!||||||:!!|||||||||||||||.!.|||||| alLysThrAlaPheAlaTyrLeuAsnLeuLeuArg 262158 : TTAAAACTGCTTTCGCGTATCTGAATCTGTTGCGT : 262192 vulgar: gi|815911898|ref|XP_012241390.1| 26 409 . KQ414889.1 259772 262192 + 476 M 17 51 G 0 6 M 127 381 G 0 3 M 130 390 S 0 2 5 0 2 I 0 1105 3 0 2 S 1 1 M 43 129 5 0 2 I 0 77 3 0 2 M 29 87 G 1 0 M 16 48 S 0 2 5 0 2 I 0 71 3 0 2 S 1 1 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259773 262192 476 + . gene_id 6 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259773 260605 . + . KQ414889.1 exonerate:protein2genome:local exon 259773 260605 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260606 260607 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 260606 261714 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261713 261714 . + . intron_id 0 ; splice_site "tg" KQ414889.1 exonerate:protein2genome:local cds 261715 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261715 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262062 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262062 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 262063 262064 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 262063 262137 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 262136 262137 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 262138 262192 . + . KQ414889.1 exonerate:protein2genome:local exon 262138 262192 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259773 262192 476 + . alignment_id 6 ; Query gi|815911898|ref|XP_012241390.1| ; Align 259773 27 51 ; Align 259830 44 381 ; Align 260214 171 390 ; Align 261716 302 129 ; Align 261926 345 87 ; Align 262013 375 48 ; Align 262139 392 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 468 Query range: 19 -> 344 Target range: 232438 -> 234914 20 : AsnTyrGluGluAspIleIleTyrValThrLysHisAsnLysTrpValLeuAsnSerI : 39 ||| ! !..!||| ! ||| !! !:!! |||:::||| !!|||!.. !!! AsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProM 232439 : AACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGA : 232496 40 : leGlyIleTrpProAlaMetValGlu<-><->GlyIleGlyLysPheLeuProArgIl : 56 !:||| !|||||| !:!:..!||| !! ! !:!!.!.||| !!!:!:! etGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLe 232497 : TGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACT : 232553 57 : eAlaIleGlyLeuSerAsnLeuIleLeuPhePheThrLeuValGlnCysValLeuHis : 75 : !! ! ! !!!!:!!! !:!::!!.!!! !:!!:!!|||! !|||:!!||| ! uLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPhe 232554 : GTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTC : 232610 76 : IleValLeuGluGlnLysAspProLeuLeuArgLeuLysIleLeuGlyLeuThrCysP : 95 |||:!!!!!|||.!.! !..!! ! ! !|||:!!||| !:!!|||! !! ! !! IleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerH 232611 : ATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTC : 232670 96 : heSerPheIleSerLeuMetLysTyrTrpAlaLeuThrIleArgLysProLysIleGl : 114 !! !.!.!!:.!! !:!!!!.|||!! ..!||| ! !!:! ! ! ! ||| isPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLe 232671 : ACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCT : 232727 115 : uTyrCysIleGluGlnLeuTyrAlaAspTrpLysGlnIleGluTyrGlnArgAspArg : 133 ||||||:!:||||||:!! ! !||||||::!.!.:!!:!! ! ! ! !!||| uTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArg 232728 : CTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGT : 232784 134 : LysLeuMetLeuLysTyrGlyLysIleGlyArgArgLeuThrValTyrSerAlaValP : 153 ! |||||||||||| !!!.!|||:!!|||||| !:!!.!! ! !:!!||| !!! AspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheC 232785 : GATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTT : 232844 154 : heMetTyrSerGlyGlyIleIleTyrHisThrValMetGlnTyrAlaIleGlySer<- : 172 !|||:!!!!!|||! ! ! ! !!.!.! !|||! ! ! !!!:.!!!!! ysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPh 232845 : GCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTT : 232901 173 : >TyrValAspGluPheAsnHisThrIleLysLeuLeuValTyrProThrTyrSerGly : 190 ||||||! .!. !:!:!!:!!!!: ! ! !||| !! ! !! !|||!!! ! eTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLys 232902 : CTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAG : 232958 191 : LeuTyrAspValGlnLysSerProValTyrGluLeuValTyrValLeuGlnCysIleC : 210 ||| |||..!::! ||||||..! !!|||:!!:!!!:!||||||||||||:!!! LeuMetAspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuS 232959 : CTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCT : 233018 211 : ysGlyTyrValPheAspThrValThrValGlyAlaCysGlyLeuAlaAlaLeuPheAl : 229 !|||!:!:!! ! :!!:!!||||||||||||||||||||||||!.!|||:!!.!.|| erGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAl 233019 : CCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGC : 233075 230 : aThrHisThrCysGlyGlnIleAspValIleMetSerArgLeuAsnAspLeuIleAsp : 248 |! !|||.!!|||||||||:!::!!|||:!:||||||!:!|||:!!||||||:!:||| aMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAsp 233076 : GATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGAC : 233132 249 : GlyLysPheSerLysGluAsnSerAsnThrSerValArgLeuMetGluIleValGluH : 268 !.!||| .!!:!!|||.!.!!! !.!!..! !!:!||| |||||||||| AlaLys---GlyGlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluH 233133 : GCGAAA---GGGCAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGC : 233189 269 : isHisIleArgThrLeu{Ly} >>>> Target Intron 1 >>>> {s}PheSe : 276 |||||:!:|||||||||{!.} 1315 bp {.}|||! isHisLeuArgThrLeu{Se}++ ++{r}PheIl 233190 : ATCATTTGCGTACATTA{AG}gt.........................ag{T}TTTAT : 234528 277 : rAlaMetValGluThrValLeuGlnGluValCysPheLeuGluPheIleGlyThrThr : 295 ! !! :!!|||!.!|||:!!.!. !:!!|||.!.:!!|||!!.:!!||| !||| eArgAsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuValGlyCysThr 234529 : ACGGAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACG : 234585 296 : PheValMetCysLeuLeuGluTyrTyrCysIleThr >>>> Target Intron 2 : 308 !!. !||||||:!!||||||||||||! :!!||| 189 bp LeuAsnMetCysMetLeuGluTyrTyrLeuLeuThr++ 234586 : TTGAACATGTGCATGCTCGAGTATTATTTACTCACGgt.................... : 234626 309 : >>>> AspTrpGlnGlnAsnAsnLysIleGlyLeuThrThrTyrSerLeuLeuLeu : 324 :!!!!.:::||| |||.!!:!!||| !:!!:!!! ! ++---------GluLysSerLysGluLysLeuAlaSerTyrValIleValTyr 234627 : .....ag---------GAAAAgtcgaaggaaaaattagCTTCATACGTCATCGTGTAC : 234852 325 : IleSerLeuThrPheAsnMetPheLeuLeuCysTyrIleGlyAspLeuLeuIleGluL : 344 :!:|||:!!|||||||||:::|||:::...||||||||||||!!: !|||! !|||: ValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluG 234853 : GTGTCCATGACATTtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGC : 234912 345 : ys : 344 !! ln 234913 : AG : 234914 vulgar: gi|815911898|ref|XP_012241390.1| 19 344 . KQ414889.1 232438 234914 + 468 M 28 84 G 0 6 M 124 372 G 0 3 M 79 237 G 1 0 M 22 66 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 33 99 5 0 2 I 0 185 3 0 2 G 3 0 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232439 234914 468 + . gene_id 7 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232439 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232439 233208 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232439 234914 468 + . alignment_id 7 ; Query gi|815911898|ref|XP_012241390.1| ; Align 232439 20 84 ; Align 232529 48 372 ; Align 232904 172 237 ; Align 233141 252 66 ; Align 234525 275 99 ; Align 234813 311 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 412 Query range: 17 -> 274 Target range: 208185 -> 208962 18 : AsnProAsnTyrGluGluAspIleIleTyrValThrLysHisAsnLysTrpValLeuA : 37 ||| !||||||:!!.!.|||:!:! !!:! !..!:::! ||| !|||..!|||! AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 38 : snSerIleGlyIleTrpProAlaMetValGlu<-><->GlyIleGlyLysPheLeuPr : 54 !.! !|||||| !|||||| ! :!!!!: !!:!!! !!!. !! !! ysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHi 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCA : 208300 55 : oArgIleAlaIleGlyLeuSerAsnLeuIleLeuPhePheThrLeuValGlnCysVal : 73 !! !:!! !! !! !||||||:!!! !:!:||| !|||! !:!!:!!! ! !! ! sIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGly 208301 : TATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGC : 208357 74 : LeuHisIleValLeuGluGlnLysAspProLeuLeuArgLeuLysIleLeuGlyLeuT : 93 :!! ! :!!|||! ! :!!||| !! ! !!:!|||||||||! !.!! ! MetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaL 208358 : ATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTC : 208417 94 : hrCysPheSerPheIleSerLeuMetLysTyrTrpAlaLeuThrIleArgLysProLy : 112 ! !!|||! !.!.!!::!!!!!! !|||||| ! !:!!|||:!!|||:!! ! ! euSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAs 208418 : TGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGA : 208474 113 : sIleGluTyrCysIleGluGlnLeuTyrAlaAspTrpLysGlnIleGluTyrGlnArg : 131 |||..! ! |||:!!||| ! :!! ! |||||||||!:!.!.:!:|||:!!:!!..! pIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGlu 208475 : CATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAG : 208531 132 : AspArgLysLeuMetLeuLysTyrGlyLysIleGlyArgArgLeuThrValTyrSerA : 151 |||||||||:!!|||||| ! !!!.!!...!!!.!|||!:!|||! !||| !!!! AspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysG 208532 : GACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCG : 208591 152 : laValPheMetTyrSerGlyGlyIleIleTyrHisThrValMetGlnTyrAlaIleGl : 170 .!!.!|||||||||.!!||| |||...|||::: !!.!:!!! ! !.!! !! lyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAs 208592 : GAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGA : 208648 171 : ySerTyrValAspGlu<->PheAsnHisThrIleLysLeuLeuValTyrProThrTyr : 188 !!.! !|||!!:||| !||| ||| !!:! !||||||||||||..! ! pLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValPro 208649 : CAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCT : 208705 189 : SerGlyLeuTyrAspValGlnLysSerProValTyrGluLeuValTyrValLeuGlnC : 208 !.! !:!! ||||||!:! ! ||||||||| !!|||:!! !!|||..!:!!|||! LysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnL 208706 : AAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAAT : 208765 209 : ysIleCysGlyTyrValPheAspThrValThrValGlyAlaCysGlyLeuAlaAlaLe : 227 :!:! |||!:!||| ! !!!.!:!!||||||||||||||||||||||||||||| euLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLe 208766 : TGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCT : 208822 228 : uPheAlaThrHisThrCysGlyGlnIleAspValIleMetSerArgLeuAsnAspLeu : 246 |.!!|||! !|||.!!|||||||||:!:.!.:!!:!:|||||| !!:!!.!. ! ||| uLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeu 208823 : GCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTG : 208879 247 : IleAspGlyLysPheSerLysGluAsnSerAsnThrSerValArgLeuMetGluIleV : 266 :!!||||||::! ..! ! |||.!.!.!||| !..! !|||||| .!.|||| ValAspGlyArg---GluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleV 208880 : GTCGATGGACGG---GAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCG : 208936 267 : alGluHisHisIleArgThrLeuLys : 274 |||||!!.|||:!!|||..!:!!||| alGluGlnHisValArgValIleLys 208937 : TGGAGCAGCATGTTCGAGTGATCAAG : 208962 vulgar: gi|815911898|ref|XP_012241390.1| 17 274 . KQ414889.1 208185 208962 + 412 M 30 90 G 0 6 M 128 384 G 0 3 M 75 225 G 1 0 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 208962 412 + . gene_id 8 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208186 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208962 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208186 208962 412 + . alignment_id 8 ; Query gi|815911898|ref|XP_012241390.1| ; Align 208186 18 90 ; Align 208282 48 384 ; Align 208669 176 225 ; Align 208894 252 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 402 Query range: 26 -> 307 Target range: 266637 -> 267558 27 : TyrValThrLysHisAsnLysTrpValLeuAsnSerIleGlyIleTrpPro<-><->A : 44 ||| ! !:!! |||::!||| !!|||!!. !!|||||| !|||||| : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuS 266638 : TACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGT : 266695 45 : laMetValGluGlyIleGlyLysPheLeuProArgIleAlaIleGlyLeuSerAsnLe : 63 !!:!:..!... !:!!! !::!.!!:!! !! ! ! !|||! !:!!!!! !!! erLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCy 266696 : CACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTG : 266752 64 : uIleLeuPhePheThrLeuValGlnCysValLeuHisIleValLeuGluGlnLysAsp : 82 ! !:!!.!.||||||:!!:!!! |||:!!!!!|||:!!|||||||||.!.:!!..! sSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSer 266753 : CTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGT : 266809 83 : ProLeuLeuArgLeuLysIleLeuGlyLeuThrCysPheSerPheIleSerLeuMetL : 102 !! ! !!:!:!!|||:!:!!!|||! ! ! !! !!!!|||:!!.!! !!!:! IleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleA 266810 : ATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTA : 266869 103 : ysTyrTrpAlaLeuThrIleArgLysProLysIleGluTyrCysIleGluGlnLeuTy : 121 !.||| .!!||| !:!!|||!.. !:!!|||... !|||:!!|||!!.:!! ! snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 266870 : ACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCA : 266926 122 : rAlaAspTrpLysGlnIleGluTyrGlnArgAspArgLysLeuMetLeuLysTyrGly : 140 .!!||||||!:! :!: ! !..!|||!:!:!!:!!||||||||| !!!.! nThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAla 266927 : AACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCG : 266983 141 : LysIleGlyArgArgLeuThrValTyrSerAlaValPheMetTyrSerGlyGlyIleI : 160 !:!||||||||| !:!!.!!:!!!:!!!!|||!.!|||||| ! !!!|||! !:!! ArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuG 266984 : AGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCG : 267043 161 : leTyrHisThrValMetGlnTyrAlaIleGlySerTyr<->ValAspGluPheAsnHi : 178 !||| !..!:!!! ! !!:!.!!!!: !!!! |||! !.!. !.!.. lyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrAr 267044 : GCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAG : 267100 179 : sThrIleLysLeuLeuValTyrProThrTyrSerGlyLeuTyrAspValGlnLysSer : 197 .! !:!! ! |||||| !! ! !!..!|||!.! !:!! !! |||.!.! ||| gIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSer 267101 : GATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGC : 267157 198 : ProValTyrGluLeuValTyrValLeuGlnCysIleCysGlyTyrValPheAspThrV : 217 |||..! !!|||:!!||| !|||! !|||! !:!!! |||!:!:!! ! :!!:!! ProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerS 267158 : CCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGA : 267217 218 : alThrValGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisThrCysGlyGlnIl : 236 !..!|||||||||! !.!!|||||||||:!!||||||.!!|||.!!|||||||||:! erValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLe 267218 : GCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCT : 267274 237 : eAspValIleMetSerArgLeuAsnAspLeuIleAspGlyLysPheSerLysGluAsn : 255 :..!|||:!:|||! ! !!:!!!!.!!:!!!:!::!! !!... ..!!...!.!!. uSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLys 267275 : GAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAG : 267331 256 : SerAsnThrSerValArgLeuMetGluIleValGluHisHisIleArgThrLeu{Ly} : 274 !:! ! !! !! !!:!:!! ! !:!!||||||||||||:!:|||..!|||{!.} AsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se} 267332 : AACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG} : 267388 275 : >>>> Target Intron 1 >>>> {s}PheSerAlaMetValGluThrValLe : 283 69 bp {.}|||! !||| :!!|||!:!|||:! ++ ++{r}PheIleAlaArgIleGluSerValMe 267389 : gt.........................ag{C}TTCATAGCACGTATCGAAAGTGTAAT : 267484 284 : uGlnGluValCysPheLeuGluPheIleGlyThrThrPheValMetCysLeuLeuGlu : 302 !...|||:!!||||||:!!|||!!..!! ! !|||.!.! !!!:|||:!!|||... tSerGluIleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSer 267485 : GAGCGAAATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGC : 267541 303 : TyrTyrCysIleThr : 307 |||||| !:!!||| TyrTyrIleLeuThr 267542 : TATTATATCCTTACG : 267558 vulgar: gi|815911898|ref|XP_012241390.1| 26 307 . KQ414889.1 266637 267558 + 402 M 17 51 G 0 6 M 129 387 G 0 3 M 101 303 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266638 267558 402 + . gene_id 9 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266638 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266638 267389 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267558 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267558 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266638 267558 402 + . alignment_id 9 ; Query gi|815911898|ref|XP_012241390.1| ; Align 266638 27 51 ; Align 266695 44 387 ; Align 267085 173 303 ; Align 267460 275 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 391 Query range: 19 -> 275 Target range: 221357 -> 222131 20 : AsnTyrGluGluAspIleIleTyrValThrLysHisAsnLysTrpValLeuAsnSerI : 39 :!!|||:!! !:!!:!:! !! !..!:!! !:!:::|||:!!|||!!. !!| AspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProI 221358 : GATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGA : 221415 40 : leGlyIleTrpPro<-><->AlaMetValGluGlyIleGlyLysPheLeuProArgIl : 56 |||||:!!|||||| |||! :!!... !:!!! !!:!!:!||| ! !!:! leGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLe 221416 : TCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 57 : eAlaIleGlyLeuSerAsnLeuIleLeuPhePheThrLeuValGlnCysValLeuHis : 75 : !! !! !:!!!!! !! !:!::!! ||| !||||||! ||| !|||:!! uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 76 : IleValLeuGluGlnLysAspProLeuLeuArgLeuLysIleLeuGlyLeuThrCysP : 95 :!::!!|||||| !:!!||| !! ! !|||:!!|||:!:||||||! ! ! !!| ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 96 : heSerPheIleSerLeuMetLysTyrTrpAlaLeuThrIleArgLysProLysIleGl : 114 ||!!! ! !!::!!!!!:!:|||||| !|||! !:!! !:!! ! ! |||.. heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 115 : uTyrCysIleGluGlnLeuTyrAlaAspTrpLysGlnIleGluTyrGlnArgAspArg : 133 . ! |||||||||!:::!! ! !|||||||||.!.||| |||...!:!|||!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 134 : LysLeuMetLeuLysTyrGlyLysIleGlyArgArgLeuThrValTyrSerAlaValP : 153 ! :!!|||:!!:!! !!!.!! .!!||||||||||||! !:!! !!!!.!! !!| AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 154 : heMetTyrSerGlyGlyIleIleTyrHisThrValMetGlnTyrAlaIleGlySerTy : 172 |||||||||||||| :::...|||::: !!.!!!:! !!:!::!:!:|||!.! heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 173 : r<->ValAspGluPheAsnHisThrIleLysLeuLeuValTyrProThrTyrSerGly : 190 ! !.!.!.!!: ||| |||... ! !:!!|||!:!||| !! !!! ! eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 191 : LeuTyrAspValGlnLysSerProValTyrGluLeuValTyrValLeuGlnCysIleC : 210 :!! !|||..!!:! ! ||||||||| !!|||:!!:!!!:! !|||||| !!!:. IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 211 : ysGlyTyrValPheAspThrValThrValGlyAlaCysGlyLeuAlaAlaLeuPheAl : 229 ..||| !:!!.!. !!!:!:!!||| !!.!||||||.!!|||!.!|||:!!||||| laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 230 : aThrHisThrCysGlyGlnIleAspValIleMetSerArgLeuAsnAspLeuIleAsp : 248 |..!|||.!!|||||||||!!:.!.|||:!:|||||| !!|||!!. !!||||||:!! aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 249 : GlyLysPheSerLysGluAsnSerAsnThrSerValArgLeuMetGluIleValGluH : 268 |||::! ..!! ! ||| |||..!..! !|||:!! !:!!||||||.!.! GlyArgAlaAspMetCysAsn---AsnValAspArgArgIleAlaLysIleValAsnG 222052 : GGCCGGGCGGATATGTGTAAC---AACGTGGATAGGAGAATAGCGAAGATTGTGAATC : 222108 269 : isHisIleArgThrLeuLysPhe : 275 !.|||:!!|||! !|||:!!!:! lnHisValArgIleLeuGlnTyr 222109 : AACACGTTCGAATATTGCAGTAT : 222131 vulgar: gi|815911898|ref|XP_012241390.1| 19 275 . KQ414889.1 221357 222131 + 391 M 24 72 G 0 6 M 129 387 G 0 3 M 83 249 G 1 0 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221358 222131 391 + . gene_id 10 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221358 222131 . + . KQ414889.1 exonerate:protein2genome:local exon 221358 222131 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221358 222131 391 + . alignment_id 10 ; Query gi|815911898|ref|XP_012241390.1| ; Align 221358 20 72 ; Align 221436 44 387 ; Align 221826 173 249 ; Align 222075 257 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 382 Query range: 2 -> 274 Target range: 217102 -> 217924 3 : ThrSerThrArgLeuSerThrArgSerArgThrAspGlnSerArgAsnProAsnTyrG : 22 |||! ! !!:!|||:!!|||!.!!.!..! !..!! !!!! !:!! !.!.|||| ThrMetGlnLysLeuAlaThrAsnLysGluGlnSerProArgThrAspTyrGluTyrG 217103 : ACGATGCAAAAACTTGCAACAAACAAGGAACAATCCCCCAGAACCGACTACGAgtacg : 217160 23 : luGluAspIleIleTyrValThrLysHisAsnLysTrpValLeuAsnSerIleGlyIl : 41 ||::::::||| !! !:!! |||:::|||:!!|||!!. !!!!:|||:! luLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLe 217161 : agaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCT : 217217 42 : eTrpPro<-><->AlaMetValGluGlyIleGlyLysPheLeuProArgIleAlaIle : 58 !|||||| !! ..! !! ! !!|||.!!||| !!:!:!: !! ! uTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsn 217218 : TTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAAC : 217274 59 : GlyLeuSerAsnLeuIleLeuPhePheThrLeuValGlnCysValLeuHisIleValL : 78 !.!|||!!! !! !:!::!! !||| !!!!|||! !||| !:!!:!!:!: !!| AlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheL 217275 : GCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCC : 217334 79 : euGluGlnLysAspProLeuLeuArgLeuLysIleLeuGlyLeuThrCysPheSerPh : 97 ||||| :!!|||! !! ! !!:!||||||:!:!!!|||! ! ! !|||!!! ! euGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysVa 217335 : TCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGT : 217391 98 : eIleSerLeuMetLysTyrTrpAlaLeuThrIleArgLysProLysIleGluTyrCys : 116 !!::!!!!!:!:||||||!:::!!|||! !:!!!.!||| !! ! |||... ! ||| lMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCys 217392 : GATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGC : 217448 117 : IleGluGlnLeuTyrAlaAspTrpLysGlnIleGluTyrGlnArgAspArgLysLeuM : 136 :!:..!::!:!! ! !||||||!:!.!.:!!..!! !:!!!:!||||||:!! !| ValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArgGluAlaM 217449 : GTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGA : 217508 137 : etLeuLysTyrGlyLysIleGlyArgArgLeuThrValTyrSerAlaValPheMetTy : 155 ||:!! ! !!!.!!!..!!||||||!:!|||..!:!! !!!!.!! !!|||||||| etIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetTy 217509 : TGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTA : 217565 156 : rSerGlyGlyIleIleTyrHisThrValMetGlnTyrAlaIleGlySerTyrValAsp : 174 ||||||| :::...|||::: !!.!!!:! ! !::!:!:|||!!! !:!!... rSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSer 217566 : CAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCG : 217622 175 : Glu<->PheAsnHisThrIleLysLeuLeuValTyrProThrTyrSerGlyLeuTyrA : 193 ||| |||! !|||.!!! ! !||||||!:!||| ! !.! !:!! !| GluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyrIleIleA 217623 : GAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCG : 217682 194 : spValGlnLysSerProValTyrGluLeuValTyrValLeuGlnCysIleCysGlyTy : 212 ||..!!:: ! !!!|||..! !!|||:!!|||!:! !!||||||! |||..!||| spThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAl 217683 : ATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGC : 217739 213 : rValPheAspThrValThrValGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHis : 231 !:!!.!. !! !:!!||| !!.!||||||.!!||||||||| !||||||..!||| aLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHis 217740 : TTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCAT : 217796 232 : ThrCysGlyGlnIleAspValIleMetSerArgLeuAsnAspLeuIleAspGlyLysP : 251 .!!||||||||||||!!:|||:!:|||!:! !!|||.!. !!||||||||||||!:! AlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArg- 217797 : GCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGA- : 217856 252 : heSerLysGluAsnSerAsnThrSerValArgLeuMetGluIleValGluHisHisIl : 270 :!! ! !!:!..!!.!..!..!! !|||:!! !...||||||...!!.|||:! --AlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnHisVa 217857 : --GCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGT : 217910 271 : eArgThrLeuLys : 274 !|||! !|||||| lArgIleLeuLys 217911 : TCGGATATTAAAG : 217924 vulgar: gi|815911898|ref|XP_012241390.1| 2 274 . KQ414889.1 217102 217924 + 382 M 41 123 G 0 6 M 132 396 G 0 3 M 75 225 G 1 0 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217103 217924 382 + . gene_id 11 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217103 217924 . + . KQ414889.1 exonerate:protein2genome:local exon 217103 217924 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217103 217924 382 + . alignment_id 11 ; Query gi|815911898|ref|XP_012241390.1| ; Align 217103 3 123 ; Align 217232 44 396 ; Align 217631 176 225 ; Align 217856 252 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 328 Query range: 21 -> 248 Target range: 204221 -> 204905 22 : GluGluAspIleIleTyrValThrLysHisAsnLysTrpValLeuAsnSerIleGlyI : 41 |||||||||:!:! !|||!.!|||::: ! ||| !:!!|||...! !:!!||| GluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyA 204222 : GAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTG : 204279 42 : leTrpProAlaMetValGluGly<-><->IleGlyLysPheLeuProArgIleAlaIl : 58 |||||| ! |||.!...! .!! !!:!.!.:!!! !||||||! ! laTrpProIleProValAsnSerSerProPheThrArgLeuValArgArgIleGluHi 204280 : CGTGGCCGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACA : 204336 59 : eGlyLeuSerAsnLeuIleLeuPhePheThrLeuValGlnCysValLeuHisIleVal : 77 !! !:!!!!! ...:::...|||... !:!!|||! !!:!!|||:!!:!: !! sValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPhe 204337 : CGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTC : 204393 78 : LeuGluGlnLysAspProLeuLeuArgLeuLysIleLeuGlyLeuThrCysPheSerP : 97 |||:!!:!!|||:!! ! !:!!||||||||||||||||||! !! ! !!!! LeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysS 204394 : CTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCA : 204453 98 : heIleSerLeuMetLysTyrTrpAlaLeuThrIleArgLysProLysIleGluTyrCy : 116 !|||..!!!!.!.||||||! !.!:!! ! !|||! !||||||:!! ! ! erIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSe 204454 : GCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAG : 204510 117 : sIleGluGlnLeuTyrAlaAspTrpLysGlnIleGluTyrGlnArgAspArgLysLeu : 135 !:!:.!. :!! !||||||! !:!! ! ! .!...!:!!||| !:!! rLeuAsnThrIleArgArgAspTrpIleGluAlaThr---AspGluAsnArgLeuIle 204511 : TTTGAACACCATCAGACGCGACTGGATAGAGGCTACG---GATGAAAATCGGTTGATT : 204564 136 : MetLeuLysTyrGlyLysIleGlyArgArgLeuThrValTyrSerAlaValPheMetT : 155 .!.! !..! ! !.!|||||||||||||||:!! !:!! !:!!|||!.! !|||| PheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetT 204565 : TTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGT : 204624 156 : yrSerGlyGlyIleIleTyrHisThrValMetGlnTyrAlaIleGlySerTyrValAs : 174 ||.!!||||||:!: !|||...|||:!!:!:! ! !! !|||!!! !||| yrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleValTh 204625 : ACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTAAC : 204681 175 : pGluPheAsnHisThrIleLysLeuLeuValTyrProThrTyrSerGlyLeuTyrAsp : 193 !||| !||||||!:!! !||| !! !|||..!||| ...:::::: rProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePheAsn 204682 : ACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaac : 204738 194 : ValGlnLysSerProValTyrGluLeuValTyrValLeuGlnCysIleCysGlyTyrV : 213 ! !|||:::|||||| !||||||:!!|||!:!:!!|||||| !!!:..!|||!:!| GluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheV 204739 : GAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTG : 204798 214 : alPheAspThrValThrValGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisTh : 232 || ! !!.!!|||! ! !|||.!!||||||:!!..!|||||||||!.! !|||.! alThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAl 204799 : TTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGC : 204855 233 : rCysGlyGlnIleAspValIleMetSerArgLeuAsnAspLeuIleAsp : 248 !|||.!!..!:!: :!!:!::!!!:!!:!:!!|||! |||:!:||| aCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAsp 204856 : GTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGAT : 204905 vulgar: gi|815911898|ref|XP_012241390.1| 21 248 . KQ414889.1 204221 204905 + 328 M 27 81 G 0 6 M 80 240 G 1 0 M 119 357 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204222 204905 328 + . gene_id 12 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204222 204905 . + . KQ414889.1 exonerate:protein2genome:local exon 204222 204905 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 204222 204905 328 + . alignment_id 12 ; Query gi|815911898|ref|XP_012241390.1| ; Align 204222 22 81 ; Align 204309 49 240 ; Align 204549 130 357 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 325 Query range: 12 -> 274 Target range: 289693 -> 290482 13 : ThrAspGlnSerArgAsnProAsnTyrGluGluAspIleIleTyrValThrLysHisA : 32 !:!|||!:: !! !||| !..!|||||| !|||||| !|||..! !:!! SerAspArgProSerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuC 289694 : AGCGATCGTCCGTCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTAT : 289751 33 : snLysTrpValLeuAsnSerIleGlyIleTrpProAlaMetValGluGlyIleGlyLy : 51 ! ! |||:!!|||!!. !!||||||!!:!::||| !:!: !!... !! .!!!: ysHisTrpIleLeuLysProIleGlyMetTyrProPheValPheSerArgAlaSerAr 289752 : GCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAG : 289808 52 : sPheLeuProArgIleAlaIleGlyLeuSerAsnLeu<-><-><->IleLeuPhePhe : 67 ! ! !! !! ! :!!:!: !|||! ! :!! |||||| ||| gArgGluArgThrAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPhe 289809 : ACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTC : 289865 68 : ThrLeuValGlnCysValLeuHisIleValLeuGluGlnLysAspProLeuLeuArgL : 87 ! !:!!|||! !! ! !! !|||:!!:!!!!!....!.!!.||| ! ! ! !: IleIleValProPheSerHisHisValLeuPheSerAspAsnAspMetAsnThrPheV 289866 : ATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCG : 289925 88 : euLysIleLeuGlyLeuThrCysPheSerPheIleSerLeuMetLysTyrTrpAlaLe : 106 !!|||! !||||||! ! ! |||!!!!!.! !!!!!!!.!.||||||!! !!! alLysAsnLeuGlyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPh 289926 : TTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTT : 289982 107 : uThrIleArgLysProLysIleGluTyrCysIleGluGlnLeuTyrAlaAspTrpLys : 125 !!:!!!:!:! !! !|||! !|||:!::!!!!.:!! ! !||||||||| eSerMetLysGlySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLys 289983 : CAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAG : 290039 126 : GlnIleGluTyrGlnArgAspArgLysLeuMetLeuLysTyrGlyLysIleGlyArgA : 145 ..!:!:... !!:!! ! !!||| :!!||||||!:!|||! !! !!!:.!!|||! MetLeuArgAspGluAspHisArgValIleMetLeuArgTyrValThrMetSerArgA 290040 : ATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGA : 290099 146 : rgLeuThrValTyrSerAlaValPheMetTyrSerGlyGlyIleIleTyrHisThrVa : 164 .!|||! ! ! !!!|||:!!|||:!!|||! !||||||:!: !|||:!!||||| snLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrVa 290100 : ATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGT : 290156 165 : lMetGlnTyrAlaIleGlySerTyrValAspGluPheAsnHisThrIleLysLeuLeu : 183 |!!:! !! ! !!.! !|||:!!! ||| ||||||!:!! !||| lIleProLeuPheSerLysLysSerValAsnGly---AsnValThrIleArgProLeu 290157 : CATACCGTTGTTCTCGAAGAAGAGCGTGAACGGT---AACGTGACTATCAGACCTCTA : 290210 184 : ValTyrProThrTyrSerGlyLeuTyrAspValGlnLysSerProValTyrGluLeuV : 203 ..!|||||| !|||..!! !!!!!:!||||||||||||||||||!.!||||||:!!| ThrTyrProGlyTyrGluGluPhePheAspValGlnLysSerProAlaTyrGluIleV 290211 : ACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCG : 290270 204 : alTyrValLeuGlnCysIleCysGlyTyrValPheAspThrValThrValGlyAlaCy : 222 ||!:! !:!!!!.|||:!!! !! ! :!! ! !.!:!!|||:!!!.!|||! alPheCysMetHisCysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTy 290271 : TCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTA : 290327 223 : sGlyLeuAlaAlaLeuPheAlaThrHisThrCysGlyGlnIleAspValIleMetSer : 241 !.!!|||.!!.!!:!!||||||||||||||||||||||||||| ! :!! !! !!!! rSerLeuThrThrIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThr 290328 : CAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACG : 290384 242 : ArgLeuAsnAspLeuIleAspGlyLysPheSerLysGluAsnSerAsnThrSerValA : 261 ||||||.!.||||||! ! ! !! !.!. ! !||| !.!.....!|||! !| ArgLeuGluAspLeuThrLysArgGlyMetLeuLeuGlu---LysGlyValSerAspA 290385 : CGGCTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAG---AAGGGAGTGAGTGATC : 290441 262 : rgLeuMetGluIleValGluHisHisIleArgThrLeuLys : 274 ||||| !! :!!|||... !|||:!:..!! !|||||| rgLeuAlaValValValSerGlyHisValGluIleLeuLys 290442 : GTTTGGCGGTTGTTGTGAGCGGTCACGTGGAGATCTTGAAG : 290482 vulgar: gi|815911898|ref|XP_012241390.1| 12 274 . KQ414889.1 289693 290482 + 325 M 51 153 G 0 9 M 112 336 G 1 0 M 78 234 G 1 0 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289694 290482 325 + . gene_id 13 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289694 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289694 290482 . + . insertions 9 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289694 290482 325 + . alignment_id 13 ; Query gi|815911898|ref|XP_012241390.1| ; Align 289694 13 153 ; Align 289856 64 336 ; Align 290192 177 234 ; Align 290426 256 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 314 Query range: 19 -> 274 Target range: 274362 -> 275136 20 : AsnTyrGluGluAspIleIleTyrValThrLysHisAsnLysTrpValLeuAsnSerI : 39 |||!:!!!:... !! ! !||| ! !:!! |||::!||| !!|||!!. !!| AsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 274363 : AATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTA : 274420 40 : leGlyIleTrpPro<-><->AlaMetValGluGlyIleGlyLysPheLeuProArgIl : 56 ||||| |||||| :!! ..! ! !.!!! !::!.!!||| !!!.!:: leGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLeuSerHisLe 274421 : TAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCt : 274477 57 : eAlaIleGlyLeuSerAsnLeuIleLeuPhePheThrLeuValGlnCysValLeuHis : 75 : ||| ||| !!! !.!!:!!.!!! !|||:!!:!!! ! !!:!!!!!||| uLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIlePheHis 274478 : tttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCAC : 274534 76 : IleValLeuGluGlnLysAspProLeuLeuArgLeuLysIleLeuGlyLeuThrCysP : 95 |||:!!|||! !.!.:!!..!! !! !|||!:!||||||:!:||||||! ! ! !! IleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyH 274535 : ATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTC : 274594 96 : heSerPheIleSerLeuMetLysTyrTrpAlaLeuThrIleArgLysProLysIleGl : 114 !!!!||||||.!! !!!:!!.||| .!!||| !:!!|||!.. !:!!|||.. isTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleAr 274595 : ACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACG : 274651 115 : uTyrCysIleGluGlnLeuTyrAlaAspTrpLysGlnIleGluTyrGlnArgAspArg : 133 . !|||:!:|||!!.:!! ! .!!||||||!:! :!: ! !..!|||!:! gGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAspGln 274652 : CGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAA : 274708 134 : LysLeuMetLeuLysTyrGlyLysIleGlyArgArgLeuThrValTyrSerAlaValP : 153 :!!:!!||||||||| !!!.!|||||||||||| !:!!.!!:!!!:!!!!|||!.!| GlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaP 274709 : CAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGT : 274768 154 : heMetTyrSerGlyGlyIleIleTyrHisThrValMetGlnTyrAlaIleGlySer<- : 172 ||||| ! !!!|||! !:!! !||| !..!:!!! !!:!.!!!!: !!!! heMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGlnThrVa 274769 : TCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGT : 274825 173 : >TyrValAspGluPheAsnHisThrIleLysLeuLeuValTyrProThrTyrSerGly : 190 ! |||! .!. !.!...|||:!: ! :!!||| !! ! !.!!|||!.! ! lGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLysLys 274826 : TCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAG : 274882 191 : LeuTyrAspValGlnLysSerProValTyrGluLeuValTyrValLeuGlnCysIleC : 210 :!! !! |||.!.! !||||||..! !!|||:!!||| !!.!! !|||! !:!:! IleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnPheValS 274883 : ATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGT : 274942 211 : ysGlyTyrValPheAspThrValThrValGlyAlaCysGlyLeuAlaAlaLeuPheAl : 229 |||!:!:!! ! :!!:!! !.!!|||||||||! !.!!|||||||||:!!||||| erGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAl 274943 : CGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGC : 274999 230 : aThrHisThrCysGlyGlnIleAspValIleMetSerArgLeuAsnAspLeuIleAsp : 248 |.!!|||.!!! !||||||:!:..!|||:!:|||! ! !!:!!!.!!!:!!!:!::!! aAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheValAsn 275000 : GGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAAT : 275056 249 : GlyLysPheSerLysGluAsnSerAsnThrSerValArgLeuMetGluIleValGluH : 268 !... ...:::......::: !..!:!! ! !:!!||||||| HisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValValValGluH 275057 : CATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAAC : 275116 269 : isHisIleArgThrLeuLys : 274 |||||:!:|||..!|||!:! isHisLeuArgValLeuArg 275117 : ATCATCTGAGGGTACTCAGG : 275136 vulgar: gi|815911898|ref|XP_012241390.1| 19 274 . KQ414889.1 274362 275136 + 314 M 24 72 G 0 6 M 128 384 G 0 3 M 103 309 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274363 275136 314 + . gene_id 14 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274363 275136 . + . KQ414889.1 exonerate:protein2genome:local exon 274363 275136 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274363 275136 314 + . alignment_id 14 ; Query gi|815911898|ref|XP_012241390.1| ; Align 274363 20 72 ; Align 274441 44 384 ; Align 274828 172 309 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 297 Query range: 26 -> 274 Target range: 262849 -> 263602 27 : TyrValThrLysHisAsnLysTrpValLeuAsnSerIleGlyIleTrpPro<-><->A : 44 ||| ! !:!! |||::!|||:!!|||!!. !!|||||| !|||||| | TyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerA 262850 : TACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCG : 262907 45 : laMetValGluGlyIleGlyLysPheLeuProArgIleAlaIleGlyLeuSerAsnLe : 63 || !:!!..! !!!!:! !::!.!!:!! ! !:!! !|||! !:!!!!! !!! laSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCy 262908 : CCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTG : 262964 64 : uIleLeuPhePheThrLeuValGlnCysValLeuHisIleValLeuGluGlnLysAsp : 82 !:!!:!!.!.! !|||:!!:!!! ! !:!!|||||||||||||||||| :!!:!! sLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsn 262965 : TCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAAT : 263021 83 : ProLeuLeuArgLeuLysIleLeuGlyLeuThrCysPheSerPheIleSerLeuMetL : 102 !! !:!!!:!|||:!!:!!||||||! ! ! !! !!!|||:!!.!!:!!!!:! PheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleA 263022 : TTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCA : 263081 103 : ysTyrTrpAlaLeuThrIleArgLysProLysIleGluTyrCysIleGluGlnLeuTy : 121 !.||| !||| !:!!!.!!.. ! ! |||:!! !|||:!::!!!!.:!! ! snTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGl 263082 : ATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCA : 263138 122 : rAlaAspTrpLysGlnIleGluTyrGlnArgAspArgLysLeuMetLeuLysTyrGly : 140 ! !|||||| :!: !..!|||!:!::::!!||||||||| !!!.! nGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAla 263139 : GGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCG : 263195 141 : LysIleGlyArgArgLeuThrValTyrSerAlaValPheMetTyrSerGlyGlyIleI : 160 ||| !|||||| !:!!.!!!.!! !!!!|||:!!|||||| ! !!!.!! !!!: LysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetC 263196 : AAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGT : 263255 161 : leTyrHisThrValMetGlnTyrAlaIleGlySerTyrValAsp<->GluPheAsnHi : 178 ! ! ! !|||! !!:!.!!! ! ! ! !! !||| .!. !.!.. ysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrAr 263256 : GCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAG : 263312 179 : sThrIleLysLeuLeuValTyrProThrTyrSerGlyLeuTyrAspValGlnLysSer : 197 .! !:!!::::!!||| !! !|||..!|||!.!! !:!! ! |||.!.! !!:! gIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThrAsn 263313 : AATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAAT : 263369 198 : ProValTyrGluLeuValTyrValLeuGlnCysIleCysGlyTyrValPheAspThrV : 217 |||..! !!|||:!! !! !!.! !|||! !:!:! |||!:!:!! !! !.!!. ProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaT 263370 : CCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGA : 263429 218 : alThrValGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisThrCysGlyGlnIl : 236 .!||||||||||||! !|||:!!.!!|||:!!|||||| !|||.!!|||||||||:! hrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLe 263430 : CAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTT : 263486 237 : eAspValIleMetSerArgLeuAsnAspLeuIleAspGlyLysPheSerLysGluAsn : 255 ::!!|||:!:|||||| !!:!!!..!!:!!!:!::!! !... ..!:!!.!.!!. uAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLys 263487 : GAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAG : 263543 256 : SerAsnThrSerValArgLeuMetGluIleValGluHisHisIleArgThrLeuLys : 274 !:! ! !! !..!..!:!! ! !|||||||||||||||:!:|||..!|||!:! AsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeuArg 263544 : AATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTGAGG : 263602 vulgar: gi|815911898|ref|XP_012241390.1| 26 274 . KQ414889.1 262849 263602 + 297 M 17 51 G 0 6 M 131 393 G 0 3 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262850 263602 297 + . gene_id 15 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262850 263602 . + . KQ414889.1 exonerate:protein2genome:local exon 262850 263602 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262850 263602 297 + . alignment_id 15 ; Query gi|815911898|ref|XP_012241390.1| ; Align 262850 27 51 ; Align 262907 44 393 ; Align 263303 175 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 271 Query range: 3 -> 246 Target range: 194102 -> 194831 4 : SerThrArgLeuSerThrArgSerArgThrAspGlnSerArgAsnProAsnTyrGluG : 23 |||!.!! !:!!... :::::: ....!.! !|||||| !||||||:!! SerAsnMetValGluGluIleAlaLysLysSerAsnTyrArgAsnValAsnTyrLysL 194103 : TCAAACATGGTCgaagaaatcgcgaagaaatcgAATTACCGCAACGTCAATTACAAAT : 194160 24 : luAspIleIleTyrValThrLysHisAsnLysTrpValLeuAsnSerIleGlyIleTr : 42 !|||! ! |||!.!..!::! ||| !:!!|||!.. !!||||||||||| euAspThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTr 194161 : TGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTG : 194217 43 : pProAlaMetValGluGlyIleGlyLysPheLeuProArgIleAlaIleGlyLeuSer : 61 |||| ! !! !... ! !! !!:! !!! !! ! ! ! !! !|||:!! ! pProArgGluAspSerLeuArgAspArgValArgLeuPheAlaGlnThrGlyValVal 194218 : GCCAAGGGAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTC : 194274 62 : AsnLeuIleLeuPhePheThrLeuValGlnCysValLeuHisIleValLeuGluGlnL : 81 ! !:!::!!! !||| !||||||! !|||:!!:!!! ! !!!!!!: : PheAlaLeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCysG 194275 : TTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGCG : 194334 82 : ysAspProLeuLeuArgLeuLysIleLeuGlyLeuThrCysPheSerPheIleSerLe : 100 !!|||! ! ! ! !:!!|||:!!:!!!.! ! ! ||||||.!.:!::!!:! luAspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaIl 194335 : AGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGAT : 194391 101 : uMetLysTyrTrpAlaLeuThrIleArgLysProLysIleGluTyrCysIleGluGln : 119 !!!:|||!:!|||.!!:!!! !:!:!.!!:! !:!!|||..!!:!|||:!: !:!! eIleLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGlu 194392 : CATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAG : 194448 120 : LeuTyrAlaAspTrpLysGlnIleGluTyrGlnArgAspArgLysLeuMetLeuLysT : 139 :!! ! .!!.!.!::!:!.!.:!:|||! !:!!..!||||||:!!:!!||| !!!.! MetGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsnC 194449 : ATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATT : 194508 140 : yrGlyLysIleGlyArgArgLeuThrValTyrSerAlaValPheMetTyrSerGlyGl : 158 !!.!|||||||||||| !!!!|||..! ! ! !! !.!! |||.!!|||!. ysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAl 194509 : GCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGC : 194565 159 : yIleIleTyrHisThrValMetGlnTyrAlaIleGlySerTyrValAspGluPheAsn : 177 !:!: ||||||! !:!!:!:! ! ! !!!! !||| ! ||| !||| aLeuProTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGluAspAsn 194566 : TTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAAC : 194622 178 : HisThrIleLysLeuLeuValTyrProThrTyrSerGlyLeuTyrAspValGlnLysS : 197 !||| ! !! !||| !||| !!:! !!! !! !!!!!:!! :!!:!! ! | SerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAspS 194623 : AGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGACT : 194682 198 : erProValTyrGluLeuValTyrValLeuGlnCysIleCysGlyTyrValPheAspTh : 216 |||||:!!||||||:!!..!!:!|||! !||| :!: !.!! !:!!.!. :! erProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuSe 194683 : CGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGTC : 194739 217 : rValThrValGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisThrCysGlyGln : 235 !..!!.! !||| !! !.!!|||!.!||| !.!! !! !||| !|||||| ! rThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGlyLeu 194740 : GACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTTG : 194796 236 : IleAspValIleMetSerArgLeuAsnAspLeu : 246 .!!!!:|||! !! !!!|||:!!.!. !:!! PheGluValThrSerArgArgMetGluThrIle 194797 : TTCGAAGTGACCAGCAGAAGGATGGAGACTATT : 194831 vulgar: gi|815911898|ref|XP_012241390.1| 3 246 . KQ414889.1 194102 194831 + 271 M 243 729 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194103 194831 271 + . gene_id 16 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194103 194831 . + . KQ414889.1 exonerate:protein2genome:local exon 194103 194831 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194103 194831 271 + . alignment_id 16 ; Query gi|815911898|ref|XP_012241390.1| ; Align 194103 4 729 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 227 Query range: 307 -> 409 Target range: 272836 -> 273293 308 : AspTrpGlnGlnAsnAsnLysIleGlyLeuThrThrTyrSerLeuLeuLeuIleSerL : 327 :!:||| .!.:!!:!! .!!||||||||||||! !:!!:!!|||||||||: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 328 : euThrPheAsnMetPheLeuLeuCysTyrIleGlyAspLeuLeuIleGluLys >>> : 345 !:|||||||||:::|||:::::!||||||||||||!!::!!|||! |||!:! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 346 : > Target Intron 1 >>>> SerThrAsnValGlyIleSerCysCysMetIleA : 356 70 bp ...:::||| ! !! !|||! : ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 357 : spTrpTyrHisLeuProAlaLysSerValGlnAspLeuValLeuIleIleAlaMetSe : 375 !!||||||:!!||||||!.!|||..!:!!! ||||||:!!|||||||||:!!! !! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 376 : rAsnAsnProAlaLysIleSerAlaGlyArgIleValAsnLeuSerLeuSerThrPhe : 394 !!:! ! ! !||||||!!!||||||||||||||| !:!!|||:!!! !|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 395 : AlaSer >>>> Target Intron 2 >>>> ValLeuLysThrSerPheAlaTy : 404 !.!..! 81 bp |||:!!|||!:!:!!|||||||| GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 405 : rLeuAsnPheLeuArg : 409 |||||||.!.|||||| rLeuAsnMetLeuArg 273277 : CTTAAATATGCTACGA : 273293 vulgar: gi|815911898|ref|XP_012241390.1| 307 409 . KQ414889.1 272836 273293 + 227 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273293 227 + . gene_id 17 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273293 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273293 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273293 227 + . alignment_id 17 ; Query gi|815911898|ref|XP_012241390.1| ; Align 272837 308 111 ; Align 273018 345 156 ; Align 273255 397 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 216 Query range: 307 -> 397 Target range: 206050 -> 206401 308 : AspTrpGlnGlnAsnAsnLysIleGlyLeuThrThrTyrSerLeuLeuLeuIleSerL : 327 !!:|||:!!.!.||||||! !! !!.!:!!! !..!|||! ! !|||! !||||||! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 328 : euThrPheAsnMetPheLeuLeuCysTyrIleGlyAspLeuLeuIleGluLys >>> : 345 !|||||| !:!:|||:!!|||||||||||||||.!.|||||||||!!::!! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 346 : > Target Intron 1 >>>> SerThrAsnValGlyIleSerCysCysMetIleA : 356 81 bp !:! ! !||||||:!:!!!! !|||! !:!:: ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 357 : spTrpTyrHisLeuProAlaLysSerValGlnAspLeuValLeuIleIleAlaMetSe : 375 !!||||||!.!|||||| !!:! !!.!!::..!:!!:!!||||||||||||||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 376 : rAsnAsnProAlaLysIleSerAlaGlyArgIleValAsnLeuSerLeuSerThrPhe : 394 |||| !!||| !|||:!!!!!||||||!:!!!: !!.!.:!!||||||:!!!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 395 : AlaSerVal : 397 .!!..!||| ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: gi|815911898|ref|XP_012241390.1| 307 397 . KQ414889.1 206050 206401 + 216 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 216 + . gene_id 18 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 216 + . alignment_id 18 ; Query gi|815911898|ref|XP_012241390.1| ; Align 206051 308 111 ; Align 206243 345 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 212 Query range: 304 -> 408 Target range: 244432 -> 244939 305 : CysIleThrAspTrpGlnGlnAsnAsnLysIleGlyLeuThrThrTyrSerLeuLeuL : 324 |||... !!!:||| !:!!!:!:!! ! ! !|||! !||||||! !:!! !| CysPhe***GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheIleAlaL 244433 : tgtttctaGGAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTATAGCAC : 244490 325 : euIleSerLeuThrPheAsnMetPheLeuLeuCysTyrIleGlyAspLeuLeuIleGl : 343 ||:!!:!!:!!..!! !|||! |||:!!||||||||||||.!!||| !|||! !|| euValAlaIleValSerAsnThrPheIleLeuCysTyrIleSerAspArgLeuThrGl 244491 : TCGTTGCTATTGTTTCTAATACATTTATACTCTGTTATATCAGCGACAGGCTGACAGA : 244547 344 : uLys >>>> Target Intron 1 >>>> SerThrAsnValGlyIleSerCysC : 353 |:!! 106 bp !!! !!!.|||||| ! ! !! uGln++ ++CysLeuLysValGlyGluValValT 244548 : ACAGgt.........................agTGCTTGAAAGTTGGTGAAGTGGTTT : 244683 354 : ysMetIleAspTrpTyrHisLeuProAlaLysSerValGlnAspLeuValLeuIleIl : 372 !|||! !|||||||||:!!|||||| !!:!!!!:!!! ||||||:!!|||||||| yrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIl 244684 : ACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCAT : 244740 373 : eAlaMetSerAsnAsnProAlaLysIleSerAlaGlyArgIleValAsnLeuSerLeu : 391 | ! ||||||! !!.!:!!|||!!!||||||!:!:!!:!!:!!:!!|||||| eLysArgSerAsnMetValValGluIleThrAlaGlyLysValLeuHisMetSerLeu 244741 : TAAACGATCGAACATGGTCGTTGAAATCACCGCTGGAAAAGTATTACATATGTCGCTT : 244797 392 : SerThrPheAlaSer >>>> Target Intron 2 >>>> ValLeuLysThrSe : 401 ! !||||||!.!..! 89 bp |||:!!||||||.! TyrThrPheGlyAsp++ ++ValValLysThrGl 244798 : TACACGTTCGGCGATgt.........................agGTAGTAAAAACAGG : 244916 402 : rPheAlaTyrLeuAsnPheLeu : 408 !|||||||||||||||.!.||| yPheAlaTyrLeuAsnMetLeu 244917 : ATTCGCCTACTTGAATATGCTT : 244939 vulgar: gi|815911898|ref|XP_012241390.1| 304 408 . KQ414889.1 244432 244939 + 212 M 40 120 5 0 2 I 0 102 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244433 244939 212 + . gene_id 19 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244433 244552 . + . KQ414889.1 exonerate:protein2genome:local exon 244433 244552 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244553 244554 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244553 244658 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244657 244658 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244659 244814 . + . KQ414889.1 exonerate:protein2genome:local exon 244659 244814 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244815 244816 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244815 244903 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 244902 244903 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244904 244939 . + . KQ414889.1 exonerate:protein2genome:local exon 244904 244939 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244433 244939 212 + . alignment_id 19 ; Query gi|815911898|ref|XP_012241390.1| ; Align 244433 305 120 ; Align 244659 345 156 ; Align 244904 397 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 307 -> 397 Target range: 224323 -> 224658 308 : AspTrpGlnGlnAsnAsnLysIleGlyLeuThrThrTyrSerLeuLeuLeuIleSerL : 327 :::|||......::::!! !! !.!! !..!||||||! !:!!||||||!!:|||| GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 328 : euThrPheAsnMetPheLeuLeuCysTyrIleGlyAspLeuLeuIleGluLys >>> : 345 |||||||||||:::|||:::...||||||||||||!!:|||:!! !|||::: euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln++ 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggt... : 224437 346 : > Target Intron 1 >>>> SerThrAsnValGlyIleSerCysCysMetIleA : 356 65 bp ...:::||| ! !! ! !||||||| ++CysGluLysIleGlyGlnValSerTyrMetIleA 224438 : ......................agtgtgaaaaaattggacaAGTGTCGTACATGATCG : 224533 357 : spTrpTyrHisLeuProAlaLysSerValGlnAspLeuValLeuIleIleAlaMetSe : 375 ||||||||!..||| !!!.!!!.!.! !! ! !! !:!!||||||||||||||||| spTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 224534 : ACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGATGTC : 224590 376 : rAsnAsnProAlaLysIleSerAlaGlyArgIleValAsnLeuSerLeuSerThrPhe : 394 ||||::! !! !|||:!:!!!||||||!.!!!:|||.!.|||!!!|||!!!|||||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThrPhe 224591 : CAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACTTTC : 224647 395 : AlaSerVal : 397 !.!..!||| GlyAspVal 224648 : GGTGACGTA : 224658 vulgar: gi|815911898|ref|XP_012241390.1| 307 397 . KQ414889.1 224323 224658 + 204 M 37 111 5 0 2 I 0 61 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224658 204 + . gene_id 20 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224658 204 + . alignment_id 20 ; Query gi|815911898|ref|XP_012241390.1| ; Align 224324 308 111 ; Align 224500 345 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 185 Query range: 266 -> 397 Target range: 300593 -> 302036 267 : GluHisHisIleArgThrLeuLysPheSerAlaMetValGluThrValLeuGlnGluV : 286 :!!||| !..!!.!! !!:!|||:!! !! |||||| !..!|||!::!!: LysHisValHisGluAsnCysArgPheAlaLysAsnValGluGluThrLeuArgAspP 300594 : AAGCATGTGCACGAAAATTGCAGATTTGCAAAGAACGTTGAGGAAACTTTGCGTGACT : 300651 287 : alCysPheLeuGluPheIleGlyThrThrPheValMetCysLeuLeuGluTyrTyrCy : 305 !!|||!!.:!!|||.!!.!!! !:!!|||.!.:!!:!!|||||||||||||||||||| heCysLeuValGluIlePheGluSerThrLeuIleLeuCysLeuLeuGluTyrTyrCy 300652 : TCTGCTTAGTGGAAATCTTCGAGTCCACGCTGATTTTGTGTTTGCTCGAATACTACTG : 300708 306 : sIle >>>> Target Intron 1 >>>> ThrAspTrpGlnGlnAsnAsnLysI : 315 |:!: 1050 bp ! ! !!.!:!...:!!.... sLeu++ +-IleLeuLeuHisArgArgAspSerP 300709 : TTTGgt.........................atATTCTGCTACATCGGCGAGATTCTT : 301788 316 : leGlyLeuThrThrTyrSerLeuLeuLeuIleSerLeuThrPheAsnMetPheLeuLe : 334 !! !! ! !||||||! !! !! ! ... ... ||||||:!:|||! !! heArgThrGlyThrTyrLeuGln***LysPheProPheLeuPheAsnValPheProAr 301789 : TCCGAACAGGTACTTACTTACAGTAGAagtttccatttcttttcaatGTATTTCCACG : 301845 335 : uCysTyrIleGlyAspLeuLeuIleGluLysSerThrAsnValGlyIleSerCysCys : 353 !! !! ! !.!! !:!! ! !!!: !!!!!!:!.!.:!!||| !:!!! ! ! gTyrLeuSerSerPheIleGlyArgAsp***CysSerGlnIleGlySerAlaSerTyr 301846 : GTATTTAAGCAGCTTTATTGGTCGTGATTAGTGTAGCCAAATTGGTTCAGCATCGTAC : 301902 354 : MetIleAspTrpTyrHisLeuProAlaLysSerValGlnAspLeuValLeuIleIleA : 373 !||||||||||||:!!||||||||||||!!!!.! ! ||||||:!!|||:!!! !! GluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerV 301903 : GAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCG : 301962 374 : laMetSerAsnAsnProAlaLysIleSerAlaGlyArgIleValAsnLeuSerLeuSe : 392 .!!!:|||.!. !!||| !!|||:!!!!!||||||!:!|||:!!:!!|||||||||!: alIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAs 301963 : TGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAA : 302019 393 : rThrPheAlaSerVal : 397 !||||||::!|||||| nThrPheSerSerVal 302020 : TACATTCAGCTCTGTA : 302036 vulgar: gi|815911898|ref|XP_012241390.1| 266 397 . KQ414889.1 300593 302036 + 185 M 40 120 5 0 2 I 0 1046 3 0 2 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300594 302036 185 + . gene_id 21 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300594 300713 . + . KQ414889.1 exonerate:protein2genome:local exon 300594 300713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300714 300715 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300714 301763 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301762 301763 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 301764 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301764 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300594 302036 185 + . alignment_id 21 ; Query gi|815911898|ref|XP_012241390.1| ; Align 300594 267 120 ; Align 301764 307 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 182 Query range: 290 -> 401 Target range: 297409 -> 297815 291 : PheIleGlyThrThrPheValMetCysLeuLeuGluTyrTyrCysIleThrAspTrpG : 310 ||||||! ! ::: |||:::|||::: ... |||: PheIleAspLeuIleValLeuLysIle***LeuLysTyrHisPhePheGlnGlyTrpL 297410 : TTCATCGATCTtatagttttaaaaatatagttaaaatatcatttttttcaggGATGGA : 297467 311 : lnGlnAsnAsnLysIleGlyLeuThrThrTyrSerLeuLeuLeuIleSerLeuThrPh : 329 !! :!!:!!! !||| ! !..!||| !.!! !!!!:!!:!!|||:!!||||| ysThrHisAspMetIlePheGlyValThrIleGlyGlyPheMetLeuSerIleThrPh 297468 : AAACTCACGATATGATTTTTGGGGTAACGATCGGCGGTTTCATGCTTTCGATCACTTT : 297524 330 : eAsnMetPheLeuLeuCysTyrIleGlyAspLeuLeuIleGluLys >>>> Targe : 345 ||||!!:|||:!!||||||:!! !|||!!:||||||:!!|||:!! eAsnIlePheValLeuCysHisAlaGlyGluLeuLeuValGluGlu++ 297525 : TAATATATTCGTATTATGTCATGCAGGTGAACTTCTTGTCGAGGAGgt.......... : 297574 346 : t Intron 1 >>>> SerThrAsnValGlyIleSerCysCysMetIleAspTrpTy : 358 73 bp :!! !!!. !!|||! !:!!..!! !! |||!!:||||| ++AlaGluLysPheGlyAsnAlaAlaTyrAsnIleGluTrpTy 297575 : ...............agGCTGAAAAATTCGGCAATGCAGCTTATAACATCGAATGGTA : 297684 359 : rHisLeuProAlaLysSerValGlnAspLeuValLeuIleIleAlaMetSerAsnAsn : 377 |:!!|||||| !!!!.!!!!.!! ||||||||||||!!:|||!.!!!::!!!!. ! rAsnLeuProProAsnArgAlaLeuAspLeuValLeuMetIleGlyIleAlaLysPhe 297685 : CAACTTACCGCCAAACAGGGCTCTCGATCTGGTGTTAATGATCGGTATAGCAAAATTT : 297741 378 : ProAlaLysIleSerAlaGlyArgIleValAsnLeuSerLeuSerThrPheAlaSerV : 397 ||| !!!:!:!!!!!...|||:::||| ::::::|||:!!!:!||||||::!:!!| ProProArgLeuThrGlyGlyLysIlePheAspIleSerIleAsnThrPheSerAlaV 297742 : CCACCGAGGCTCACAggtggaaaaatattcgatatatCGATAAACACGTTCAGTGCCG : 297801 398 : alLeuLysThrSer : 401 ||! !!:: ||| alArgArgGlnSer 297802 : TACGTAgacaaagt : 297815 vulgar: gi|815911898|ref|XP_012241390.1| 290 401 . KQ414889.1 297409 297815 + 182 M 54 162 5 0 2 I 0 69 3 0 2 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297410 297815 182 + . gene_id 22 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 297410 297571 . + . KQ414889.1 exonerate:protein2genome:local exon 297410 297571 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 297572 297573 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 297572 297644 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 297643 297644 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 297645 297815 . + . KQ414889.1 exonerate:protein2genome:local exon 297645 297815 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297410 297815 182 + . alignment_id 22 ; Query gi|815911898|ref|XP_012241390.1| ; Align 297410 291 162 ; Align 297645 345 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 163 Query range: 7 -> 176 Target range: 299632 -> 300147 8 : SerThrArgSerArgThrAspGlnSerArgAsnProAsnTyrGluGluAspIleIleT : 27 ||| !!!!||| ! !! !|||! !|||||| !:!!|||:!!.!.|||||| !| SerCysSerSerValAspGlyGlnLeuArgAsnTyrHisTyrGlnAsnAspIleHisT 299633 : TCCTGTAGCAGTGTTGACGGCCAATTGAGGAATTACCATTACCAAAATGACATACATT : 299690 28 : yrValThrLysHisAsnLysTrpValLeuAsnSerIleGlyIleTrpProAlaMetVa : 46 ||..! !:!! !:!!|||:!!|||!!. !!||||||:!!|||! ! !:!:! yrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpArgLeuLeuAs 299691 : ACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGCGATTGCTAGA : 299747 47 : lGluGlyIleGlyLysPheLeuProArgIleAlaIleGlyLeuSerAsnLeuIle<-> : 65 !:!! !! !.!!|||.!. !! !! !:!!:!!|||! !|||! !!..:!! ! pGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMetThrIleCysPhe 299748 : TCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATGACAATATGCTTC : 299804 66 : <-><->LeuPhePheThrLeuValGlnCysValLeuHisIleValLeuGluGlnLysA : 82 |||||||||! !:!!:!!! !! !! !! !:!!||| !!!!!! !:!!|||. SerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePhePheAlaGluLysS 299805 : TCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCTTCGCGGAGAAAA : 299864 83 : spProLeuLeuArgLeuLysIleLeuGlyLeuThrCysPheSerPheIleSerLeuMe : 101 .! !! !:!!!:!:!!|||:!!!!!|||! !..! !!|||!!!.!! !|||:!!:! erIleHisValLysValLysValPheGlyProValGlyPheCysLeuSerSerIleVa 299865 : GTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCATCGT : 299921 102 : tLysTyrTrpAlaLeuThrIleArgLysProLysIleGluTyrCysIleGluGlnLeu : 120 :||||||!! !||| !:!:!.! ! !.!!||| ||||||:!!!!.:!! lLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCysIleGlnHisVal 299922 : CAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGCATCCAACACGTC : 299978 121 : TyrAlaAspTrpLysGlnIleGluTyrGlnArg--AspArgLysLeuMetLeuLysTy : 139 ! !||| |||## !!|||! !:!!||||||!:!|| GluArgAsp---UnkUnkUnkUnkUnkUnkArg##HisArgThrIleMetLeuArgTy 299979 : GAGAGAGAC---NNNNNNNNNNNNNNNNTTCGAATCATCGTACGATCATGTTGAGATA : 300034 140 : rGlyLysIleGlyArgArgLeuThrValTyrSerAlaValPheMetTyrSerGlyGly : 158 |! !! !!:.!!|||!.!||||||..! !!!|||||||||:!:|||:!!|||||| rValThrMetSerArgAsnLeuThrThrValCysAlaValPheLeuTyrAlaGlyGly 300035 : CGTGACTATGAGCAGAAATCTGACGACCGTGTGCGCCGTGTTTCTTTACGCAGGTGGT : 300091 159 : IleIleTyrHisThrValMetGlnTyrAlaIleGlySerTyrValAspGluPhe : 176 !!: ||||||||||||||||||!:! ! !..! !..!|||||| MetSerTyrHisThrValMetGlnPheLeuSerLysAspArgSerSerGluPhe 300092 : ATGTCGTATCACACGGTGATGCAGTTCTTATCGAAGGACAGAAGCAGCGAGTTC : 300147 vulgar: gi|815911898|ref|XP_012241390.1| 7 176 . KQ414889.1 299632 300147 + 163 M 57 171 G 0 9 M 59 177 G 1 0 M 7 21 F 0 2 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299633 300147 163 + . gene_id 23 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299633 300147 . + . KQ414889.1 exonerate:protein2genome:local exon 299633 300147 . + . insertions 9 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local similarity 299633 300147 163 + . alignment_id 23 ; Query gi|815911898|ref|XP_012241390.1| ; Align 299633 8 171 ; Align 299813 65 177 ; Align 299990 125 21 ; Align 300013 132 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 304 -> 401 Target range: 254062 -> 254445 305 : CysIleThrAspTrpGlnGlnAsnAsnLysIleGlyLeuThrThrTyrSerLeuLeuL : 324 |||.!! !!!:||| !:!!!:!:!! ! !||| !||||||! !:!! !| CysPhe***GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrL 254063 : tgctTCTAGGAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACAC : 254120 325 : euIleSerLeuThrPheAsnMetPheLeuLeuCysTyrIleGlyAspLeuLeuIleGl : 343 ||:!!:!!:!!..! ||| ||||||:::|||||||||.!!||| !|||! !|| euValAlaValValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGl 254121 : TCGTTGCTGTTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGA : 254177 344 : uLysSerThrAsn{V} >>>> Target Intron 1 >>>> {al}GlyIleSer : 351 |:!! ! !.!.{:} 92 bp {!!}||| ! ! uGlnValGlnGlu{I}-+ ++{le}GlyGluVal 254178 : ACAGGTACAAGAG{A}ct.........................ag{TT}GGTGAAGTG : 254293 352 : CysCysMetIleAspTrpTyrHisLeuProAlaLysSerValGlnAspLeuValLeuI : 371 !! !|||! !|||||||||:!!|||||| !!:!!!!:!!! ||||||:!!|||| ValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuI 254294 : GTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGA : 254353 372 : leIleAlaMetSerAsnAsnProAlaLysIleSerAlaGlyArgIleValAsnLeuSe : 390 |||||.!! |||||| !!.!:!!|||!!!||||||:::||| ::::::|| leIleThrArgSerAsnValValValGluIleThrAlaGlyLysIlePheHisMetSe 254354 : TCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTC : 254410 391 : rLeuSerThrPheAlaSerValLeuLysThrSer : 401 ||||! !||||||!.!..!||| !:!!|||!:! rLeuTyrThrPheGlyAspValSerGluThrAsn 254411 : GCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 254445 vulgar: gi|815911898|ref|XP_012241390.1| 304 401 . KQ414889.1 254062 254445 + 161 M 43 129 S 0 1 5 0 2 I 0 88 3 0 2 S 1 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254063 254445 161 + . gene_id 24 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254063 254192 . + . KQ414889.1 exonerate:protein2genome:local exon 254063 254192 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254193 254194 . + . intron_id 1 ; splice_site "CT" KQ414889.1 exonerate:protein2genome:local intron 254193 254284 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254283 254284 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254285 254445 . + . KQ414889.1 exonerate:protein2genome:local exon 254285 254445 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254063 254445 161 + . alignment_id 24 ; Query gi|815911898|ref|XP_012241390.1| ; Align 254063 305 129 ; Align 254287 349 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 346 -> 408 Target range: 238634 -> 238909 347 : AsnValGlyIleSerCysCysMetIleAspTrpTyrHisLeuProAlaLysSerValG : 366 !!.|||||| ! ! !! !|||! !|||||||||:!!|||||| !!:!!!!:!!! LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 238635 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 238692 367 : lnAspLeuValLeuIleIleAlaMetSerAsnAsnProAlaLysIleSerAlaGlyAr : 385 ||||||:!!||||||||| ! |||||| !!.!|||:!!!!!||||||!: euAspLeuIleLeuIleIleLysArgSerAsnValValValLysValThrAlaGlyLy 238693 : TCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCACCGCTGGAAA : 238749 386 : gIleValAsnLeuSerLeuSerThrPheAlaSer >>>> Target Intron 1 > : 397 !:!!:!!:!!:!!||||||! !||||||!.!..! 89 bp sValLeuHisMetSerLeuTyrThrPheGlyAsp++ 238750 : AGTATTACATATGTCGCTTTACACGTTCGGCGATgt...................... : 238787 398 : >>> ValLeuLysThrSerPheAlaTyrLeuAsnPheLeu : 408 |||:!!||||||.!!|||||||||:!!|||.!.||| ++ValValLysThrGlyPheAlaTyrMetAsnMetLeu 238788 : ...agGTAGTAAAAACAGGATTCGCCTACATGAATATGCTT : 238909 vulgar: gi|815911898|ref|XP_012241390.1| 346 408 . KQ414889.1 238634 238909 + 156 M 50 150 5 0 2 I 0 85 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238635 238909 156 + . gene_id 25 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 238635 238784 . + . KQ414889.1 exonerate:protein2genome:local exon 238635 238784 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238785 238786 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238785 238873 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 238872 238873 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238874 238909 . + . KQ414889.1 exonerate:protein2genome:local exon 238874 238909 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238635 238909 156 + . alignment_id 25 ; Query gi|815911898|ref|XP_012241390.1| ; Align 238635 347 150 ; Align 238874 397 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 190 -> 250 Target range: 202712 -> 202892 191 : LeuTyrAspValGlnLysSerProValTyrGluLeuValTyrValLeuGlnCysIleC : 210 :!! !||||||::! ! ||||||||| !!|||:!! !!!:! !:!!!:! !:!!. IleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleValA 202713 : ATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAG : 202770 211 : ysGlyTyrValPheAspThrValThrValGlyAlaCysGlyLeuAlaAlaLeuPheAl : 229 .!! ! !:!!.!! !! !|||||||||||||||||| !!|||.!!||||||||||| laValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAl 202771 : CTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGC : 202827 230 : aThrHisThrCysGlyGlnIleAspValIleMetSerArgLeuAsnAspLeuIleAsp : 248 |..!||| !|||||||||!!:||||||:!:|||:!! !!|||.!. !!|||!!:||| aValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMetAsp 202828 : GGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGAT : 202884 249 : GlyLys : 250 |||::: GlyArg 202885 : GGTCGT : 202892 vulgar: gi|815911898|ref|XP_012241390.1| 190 250 . KQ414889.1 202712 202892 + 145 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202713 202892 145 + . gene_id 26 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202713 202892 . + . KQ414889.1 exonerate:protein2genome:local exon 202713 202892 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202713 202892 145 + . alignment_id 26 ; Query gi|815911898|ref|XP_012241390.1| ; Align 202713 191 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 346 -> 412 Target range: 264732 -> 265010 347 : AsnValGlyIleSerCysCysMetIleAspTrpTyrHisLeuProAlaLysSerValG : 366 !!.|||||| ! !! !||| :!!||||||:!!|||||| !|||..!:!!! LysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrLysAspIleL 264733 : AAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACAAAGATATCC : 264790 367 : lnAspLeuValLeuIleIleAlaMetSerAsnAsnProAlaLysIleSerAlaGlyAr : 385 ||||||:!!||||||||| !! |||!:! ! !|||.!!!!!||||||!: euAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheThrAlaGlyLy 264791 : TTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCACCGCTGGAAA : 264847 386 : gIleValAsnLeuSerLeuSerThrPheAlaSer >>>> Target Intron 1 > : 397 !|||:!!:!!:!!|||:!!! !||||||::!..! 80 bp sIleLeuHisMetSerMetTyrThrPheSerAsp++ 264848 : GATACTTCACATGTCCATGTACACATTCAGTGACgt...................... : 264885 398 : >>> ValLeuLysThrSerPheAlaTyrLeuAsnPheLeuArgThrAlaLeu : 412 |||:!!|||:!!||||||.!!|||||||||!!.|||||| !.!!:!! ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArgGlnThrMet 264886 : ...aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGCCAAACGATG : 265010 vulgar: gi|815911898|ref|XP_012241390.1| 346 412 . KQ414889.1 264732 265010 + 140 M 50 150 5 0 2 I 0 76 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264733 265010 140 + . gene_id 27 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264733 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264733 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265010 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265010 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264733 265010 140 + . alignment_id 27 ; Query gi|815911898|ref|XP_012241390.1| ; Align 264733 347 150 ; Align 264963 397 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 355 -> 406 Target range: 292425 -> 292578 356 : AspTrpTyrHisLeuProAlaLysSerValGlnAspLeuValLeuIleIleAlaMetS : 375 !!:||||||:!!|||||| !::!!.!!.!!::|||:!!||||||:!::!!|||!!:! GluTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIleT 292426 : GAATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAA : 292483 376 : erAsnAsnProAlaLysIleSerAlaGlyArgIleValAsnLeuSerLeuSerThrPh : 394 !!!!.:!!||| !|||:!!!!!||||||!:!||| !! !|||||||||!:!||||| hrLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPh 292484 : CGAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTT : 292540 395 : eAlaSerValLeuLysThrSerPheAlaTyrLeuAsn : 406 |!.!:!!|||! !:!!:!!!.!.!.!.!! :!!:!! eGlyAlaValArgGluSerLysLeuValLeuIleHis 292541 : TGGCGCTGTACGTGAATCAAAACTAGTCTTGATACAC : 292578 vulgar: gi|815911898|ref|XP_012241390.1| 355 406 . KQ414889.1 292425 292578 + 119 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292426 292578 119 + . gene_id 28 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292426 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292426 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292426 292578 119 + . alignment_id 28 ; Query gi|815911898|ref|XP_012241390.1| ; Align 292426 356 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 307 -> 344 Target range: 219328 -> 219439 308 : AspTrpGlnGlnAsnAsnLysIleGlyLeuThrThrTyrSerLeuLeuLeuIleSerL : 327 !!:|||:!!..!|||:!! !! .!! !..!||||||! !:!!||||||||||||| GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 328 : euThrPheAsnMetPheLeuLeuCysTyrIleGlyAspLeuLeuIleGluLys : 344 |||||||||||:::|||:::...||||||||||||!!::!!:!! !|||:!: euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: gi|815911898|ref|XP_012241390.1| 307 344 . KQ414889.1 219328 219439 + 111 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219439 111 + . gene_id 29 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219439 111 + . alignment_id 29 ; Query gi|815911898|ref|XP_012241390.1| ; Align 219329 308 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 346 -> 397 Target range: 219518 -> 219671 347 : AsnValGlyIleSerCysCysMetIleAspTrpTyrHisLeuProAlaLysSerValG : 366 ...:::||| ! !||||||!!:||||||!..||| !!!.!|||!.! !! LysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysLysL 219519 : aaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAAAGC : 219576 367 : lnAspLeuValLeuIleIleAlaMetSerAsnAsnProAlaLysIleSerAlaGlyAr : 385 !||||||! !|||||||||||||||::! !! !|||:!:!!!||||||!. euTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAs 219577 : TCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGGAAA : 219633 386 : gIleValAsnLeuSerLeuSerThrPheAlaSerVal : 397 !!!:|||.!.||||||:!!|||||||||.!!..!||| nMetValGluLeuSerIleSerThrPheThrAspVal 219634 : TATGGTCGAATTGTCTATCAGCACTTTTACCGACGTG : 219671 vulgar: gi|815911898|ref|XP_012241390.1| 346 397 . KQ414889.1 219518 219671 + 110 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219519 219671 110 + . gene_id 30 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219519 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219519 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219519 219671 110 + . alignment_id 30 ; Query gi|815911898|ref|XP_012241390.1| ; Align 219519 347 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 346 -> 406 Target range: 230253 -> 230433 347 : AsnValGlyIleSerCysCysMetIleAspTrpTyrHisLeuProAlaLysSerValG : 366 !!.|||||| !!.!! ! !||||||!!:||||||!..||| !!!.!!!.!.! !! LysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyAsnLysLysL 230254 : AAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAAACAAGAAGC : 230311 367 : lnAspLeuValLeuIleIleAlaMetSerAsnAsnProAlaLysIleSerAlaGlyAr : 385 !! !:!!||||||||||||||||||||| ! !!.!!|||.!!!!!||||||!. euCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheThrAlaGlyAs 230312 : TCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTACAGCAGGAAA : 230368 386 : gIleValAsnLeuSerLeuSerThrPheAlaSerValLeuLysThrSerPheAlaTyr : 404 !!!:|||.!.||||||:!!!:!||||||::!..!||| !! ! !! !! !!.!||| nMetValGluLeuSerValAsnThrPheSerAspValSerIleIlePheSerValTyr 230369 : CATGGTTGAATTATCCGTAAACACTTTCAGCGACGTAAGTATCATATTCTCTGTTTAC : 230425 405 : LeuAsn : 406 !||| ThrAsn 230426 : ACGAAT : 230433 vulgar: gi|815911898|ref|XP_012241390.1| 346 406 . KQ414889.1 230253 230433 + 107 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230254 230433 107 + . gene_id 31 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230254 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230254 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230254 230433 107 + . alignment_id 31 ; Query gi|815911898|ref|XP_012241390.1| ; Align 230254 347 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 269 -> 307 Target range: 228061 -> 228175 270 : IleArgThrLeuLysPheSerAlaMetValGluThrValLeuGlnGluValCysPheL : 289 :!: ! !!!!!..||| !|||:!::!!|||! !..!:!!|||:!!:!!..!|||: LeuSerArgPheSerPheLeuAlaLeuIleGluLysThrMetGlnGlnIleAlaPheV 228062 : CTGTCACGTTTCAGCTTTCTGGCCCTCATAGAGAAAACCATGCAGCAAATAGCTTTCG : 228119 290 : euGluPheIleGlyThrThrPheValMetCysLeuLeuGluTyrTyrCysIleThr : 307 !!||||||:!!||| !|||.!.:!!:!!||||||:!!||||||||| !|||||| alGluPheLeuGlyCysThrIleIleLeuCysLeuIleGluTyrTyrIleIleThr 228120 : TAGAATTTTTAGGGTGTACAATAATTCTGTGCCTCATCGAGTATTACATCATAACG : 228175 vulgar: gi|815911898|ref|XP_012241390.1| 269 307 . KQ414889.1 228061 228175 + 106 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228062 228175 106 + . gene_id 32 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 228062 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228062 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228062 228175 106 + . alignment_id 32 ; Query gi|815911898|ref|XP_012241390.1| ; Align 228062 270 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 307 -> 344 Target range: 264537 -> 264648 308 : AspTrpGlnGlnAsnAsnLysIleGlyLeuThrThrTyrSerLeuLeuLeuIleSerL : 327 !!:|||:!!...:!:::: ...||||||||||||! !:!!:!!|||||||||: GluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerM 264538 : GAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATACTGATATCAA : 264595 328 : euThrPheAsnMetPheLeuLeuCysTyrIleGlyAspLeuLeuIleGluLys : 344 !! ! !|||!!:||||||:!!||||||||||||!!::!!|||! !|||::: etCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGln 264596 : TGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcag : 264648 vulgar: gi|815911898|ref|XP_012241390.1| 307 344 . KQ414889.1 264537 264648 + 102 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264538 264648 102 + . gene_id 33 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264538 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264538 264648 102 + . alignment_id 33 ; Query gi|815911898|ref|XP_012241390.1| ; Align 264538 308 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1604 Query range: 0 -> 410 Target range: 303127 -> 305937 1 : MetGlnLeuSerMetGlnHisLysCysAspTyrThrProArgAsnLeuTyrTyrLysL : 20 |||!!.|||||||||!:!.!.:!! !||| ! !|||||||||||| !!||||||| MetHisLeuSerMetArgGluGlnIleAspArgLysProArgAsnLeuAsnTyrLysL 303128 : ATGCATCTCTCTATGCGAGAGCAGATCGATCGGAAACCGCGGAATTTGAATTACAAGA : 303185 21 : ysAspIleAlaTyrValThrLysHisSerLysTrpIleLeuGlnSerIleGlyIleTr : 39 ||||||||!.!||||||||||||||||||||||||||||||:!!|||:!!|||||||| ysAspIleValTyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTr 303186 : AAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTG : 303242 40 : pProAlaAlaValGlyAspValLysLysLeuLeuProLysIleAlaIleAlaLeuSer : 58 |||||||!.!:!!! !!!:..! ! !!!!||||||||||||.!!|||!.!|||||| pProAlaValLeuAspGluThrAlaGlyPheLeuProLysIleThrIleGlyLeuSer 303243 : GCCAGCCGTGTTGGACGAAACCGCAGGATTCCTACCAAAAATCACCATTGGACTCAGT : 303299 59 : AsnPheValLeuLeuPheAlaIleIleProCysIleLeuHisIleIlePheGluGluL : 78 |||!!.||||||||||||.!!:!:||||||||||||||||||||||||||||||:!!| AsnLeuValLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnL 303300 : AATTTGGTTCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAA : 303359 79 : ysAspThrIleMetArgLeuLysLeuSerGlyLeuLeuSerPheCysCysThrSerLe : 97 |||||||||||!!:||||||||||||! !||||||||||||||||||! ! !||||| ysAspThrIleIleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLe 303360 : AGGATACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTT : 303416 98 : uMetLysTyrTrpAlaLeuThrLeuArgLysProArgIleLysGlyCysIleGluGln : 116 |||||||||||||||||||.!! !||||||||||||||||||! !|||||||||:!! uMetLysTyrTrpAlaLeuAlaThrArgLysProArgIleLysGluCysIleGluGlu 303417 : GATGAAGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAG : 303473 117 : ValCysIleAspTrpGluGln >>>> Target Intron 1 >>>> ValGluLe : 126 ||| ! !||||||:!!:!! 938 bp ||||||! ValGlnSerAspTrpLysGlu++ ++ValGluSe 303474 : GTGCAAAGTGATTGGAAAGAGgt.........................agGTGGAATC : 304441 127 : uHisLysAspArgGluIleMetLeuLysTyrGlyArgMetGlyArgAsnLeuThrIle : 145 !! !!:!|||||||||!!:|||||||||||||||!:!||||||||||||||||||||| rLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIle 304442 : TCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATA : 304498 146 : IleCysAlaValPheMetTyrThrGlyGlyThrIleTyrHisSerIleLeuGlnTyrA : 165 |||||||||:!!||||||||||||||||||||||||||||||!!!:!!:!!|||!:!| IleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheA 304499 : ATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCG : 304558 166 : laIleGlyThrPheValAspGluHisAsnArgThrIleLysProLeuValTyrProTh : 184 ||! !||||||!:!|||||||||:!!|||||||||||||||||||||||||||||||| laThrGlyThrTyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProTh 304559 : CGACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCAC : 304615 185 : rTyrSerAlaLeuTyrAspValGlnSerSerProIleTyrAspLeuValTyrValIle : 203 |||||||||||||!:!|||||||||!!!||||||||||||!!:||||||||| !!:!! rTyrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheVal 304616 : CTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTT : 304672 204 : HisCysMetCysGlyTyrValMetTyrSerIleThrAlaGlyAlaCysGlyLeuAlaA : 223 |||||||||||||||||||||!!:|||||||||||||||||||||||||||||||||| HisCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaA 304673 : CATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCG : 304732 224 : laLeuPheAlaThrHisThrCysGlyGlnIleAspIleIleIleSerArgLeuAsnAs : 242 |||||||||||||||||.!!||||||||||||||||||:!!!!:|||||||||..!|| laLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAs 304733 : CTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGA : 304789 243 : pLeuValArgGlyGluTyrMetLysGluThrLeuAsnLeuAsnThrArgLeuIleGlu : 261 |||||||!.!.!! ||||||:!!! !:!!|||:!!! !|||||||||||| pLeuValAsnSer---------LysGluSerSerAspLeuAspLysArgLeuIleGlu 304790 : TCTTGTCAACAGC---------AAAGAATCATCTGATTTAGATAAACGATTAATAGAA : 304837 262 : IleValGluArgHisLeuArgIleLeu{Ar} >>>> Target Intron 2 >>>> : 271 |||||||||!.!|||||||||||||||{||} 70 bp IleValGluHisHisLeuArgIleLeu{Ar}++ 304838 : ATTGTTGAGCATCATTTGCGAATTTTA{AG}gt......................... : 304871 272 : {g}PheSerAlaAlaValGluMetValLeuGlnGluValCysPheLeuGluPheIl : 289 {|}||||||||| !|||:!!! |||||||||||||||||||||||||||||||| ++{g}PheSerAlaIleValGlnThrValLeuGlnGluValCysPheLeuGluPheIl 304872 : ag{A}TTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTTCTTGGAATTCAT : 304991 290 : eGlySerThrPheMetIleCysLeuLeuGluTyrTyrCysIleThr >>>> Targe : 305 ||||||||||!!.:!!|||||||||||||||||||||||||||||| eGlySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysIleThr++ 304992 : TGGTTCTACCTTACTGATATGTCTACTTGAATACTACTGTATAACGgt.......... : 305041 306 : t Intron 3 >>>> AspTrpGluGlnSerAsnThrIleSerLeuThrThrTyrTh : 318 62 bp |||||||||...|||||||||:!!||||||||||||||||| ++AspTrpGluSerSerAsnThrValSerLeuThrThrTyrTh 305042 : ...............agGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATAC : 305140 319 : rMetLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeu : 337 |:!!||||||||||||:!!||||||||||||||||||||||||||||||||||||:!! rValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIle 305141 : AGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATT : 305197 338 : LeuIleGluLys >>>> Target Intron 4 >>>> SerSerAsnValGlyLe : 347 |||!!:|||||| 413 bp ||||||!:!|||||||| LeuMetGluLys++ ++SerSerSerValGlyLe 305198 : CTTATGGAAAAGgt.........................agAGCAGTAGCGTTGGATT : 305640 348 : uSerCysPheMetIleAspTrpPheHisLeuProThrLysThrIleHisGlyLeuIle : 366 ||||||||||||||||..!|||!:!||||||||||||||||||||||||||||||||| uSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIle 305641 : ATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATT : 305697 367 : LeuIleIleAlaMetSerAsnAsnProValLysIleThrAlaGlyArgIleAlaAspL : 386 ||||||||||||||||||!:!||||||!.!||||||!:!||||||!:!:!!!.!|||| LeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysValValAspL 305698 : TTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATT : 305757 387 : euSerLeuSerThrPheGlySer >>>> Target Intron 5 >>>> ValLeu : 395 ||||||||||||||||||||!:! 106 bp |||||| euSerLeuSerThrPheGlyAsn++ ++ValLeu 305758 : TATCTTTATCCACATTTGGAAACgt.........................agGTTCTG : 305890 396 : LysSerSerLeuAlaTyrLeuSerPheLeuArgThrIleValMet : 410 |||!!!||||||||||||||||||||||||||||||! !|||!!: LysThrSerLeuAlaTyrLeuSerPheLeuArgThrThrValIle 305891 : AAAACGTCATTAGCGTATTTAAGTTTCCTTCGGACTACCGTTATA : 305937 vulgar: gi|815911908|ref|XP_012241395.1| 0 410 . KQ414889.1 303127 305937 + 1604 M 123 369 5 0 2 I 0 934 3 0 2 M 123 369 G 3 0 M 21 63 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 37 111 5 0 2 I 0 409 3 0 2 M 52 156 5 0 2 I 0 102 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303128 305937 1604 + . gene_id 1 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303128 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303128 303496 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304868 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 2 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305780 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305780 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305781 305782 . + . intron_id 5 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305781 305886 . + . intron_id 5 KQ414889.1 exonerate:protein2genome:local splice3 305885 305886 . + . intron_id 4 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305887 305937 . + . KQ414889.1 exonerate:protein2genome:local exon 305887 305937 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303128 305937 1604 + . alignment_id 1 ; Query gi|815911908|ref|XP_012241395.1| ; Align 303128 1 369 ; Align 304435 124 369 ; Align 304804 250 63 ; Align 304940 272 99 ; Align 305101 305 111 ; Align 305625 342 156 ; Align 305887 394 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 720 Query range: 17 -> 401 Target range: 284505 -> 287243 18 : TyrLysLysAspIleAlaTyrValThrLysHisSerLysTrpIleLeuGlnSerIleG : 37 !:: ! ! !||| !||| !..!:!! !:!:::|||.!!|||:!! !!|||| TrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleG 284506 : TGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTG : 284563 38 : lyIleTrpProAlaAla<-><->ValGlyAspValLysLysLeuLeuProLysIleAl : 54 ||:!!|||||| !::! ||| ! !:!!:!!|||:!! ! !! !:!! lyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLe 284564 : GCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCT : 284620 55 : aIleAlaLeuSerAsnPheValLeuLeuPheAlaIleIleProCysIleLeuHisIle : 73 ! !:!!||| !|||:!!:!! !||| !:!::!!|||||| !||| !! ! uAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThr 284621 : CGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACA : 284677 74 : IlePheGluGluLys<->AspThrIleMetArgLeuLysLeuSerGlyLeuLeuSerP : 92 :!:.!!!!::!!! ||| ! !! !!:!:!!|||:!!! !|||! !||||||| ValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerP 284678 : GTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTT : 284737 93 : heCysCysThrSerLeuMetLysTyrTrpAlaLeuThrLeuArgLysProArgIleLy : 111 ||||| ! !:!! !!!:||||||!:: !|||! !! !||| !!:!||| heCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGl 284738 : TCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGG : 284794 112 : sGlyCysIleGluGlnValCysIleAspTrpGluGlnValGluLeuHis<-><-><-> : 128 !|||:!::!!.!.:!! !! ||||||...! ..! ! !||| yGlnCysValLysAspIleArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGlu 284795 : CCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaa : 284851 129 : LysAspArgGluIleMetLeuLysTyrGlyArgMetGlyArgAsnLeuThrIleIleC : 147 ::::::|||||||||||| ! ! !!.!|||!!:||||||::!|||.!!|||.!!| GluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheC 284852 : gaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCT : 284911 148 : ysAlaValPheMetTyrThrGlyGlyThrIleTyrHisSerIleLeuGlnTyrAlaIl : 166 |||||! !|||||||||:!!|||||| !.!!||| !!!!:!::!!! !! ..!! ysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysTh 284912 : GCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCAC : 284968 167 : eGlyThrPheValAspGluHisAsnArgThrIleLysProLeuValTyrProThrTyr : 185 !! ! ! ! ! ! !!|||..!|||:!:!:! !!! !!.!!:!|||! !||| rValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyr 284969 : AGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTAT : 285025 186 : SerAlaLeuTyrAspValGlnSerSerProIleTyrAspLeuValTyrValIleHisC : 205 !!!.!||| !||| !!::!!!|||||| !:!!!::!!||| ! !!!!:!!.| ArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnC 285026 : CGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAAT : 285085 206 : ysMetCysGlyTyrValMetTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLe : 224 ||:!!..!!.!!:!|||!!:||||||:!!|||!.!|||||||||.!!|||||||||:! ysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaVa 285086 : GCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGT : 285142 225 : uPheAlaThrHisThrCysGlyGlnIleAspIleIleIleSerArgLeuAsnAspLeu : 243 !|||!.!! !|||..!|||||||||.!! |||:!!:!:!!!!:!|||:!! ! ||| lPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeu 285143 : GTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTC : 285199 244 : ValArgGlyGluTyrMetLysGluThrLeuAsnLeuAsn<->ThrArgLeuIleGluI : 262 ||| !|||! ! ! !!:!:!! !|||!:! !:!! !|||||| !!!:| ValAspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspI 285200 : GTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATA : 285259 263 : leValGluArgHisLeuArgIleLeu{Ar} >>>> Target Intron 1 >>>> : 271 ||:!!|||!.!||||||!:!||||||{ !} 1411 bp leIleGluHisHisLeuLysIleLeu{Gl}++ + 285260 : TCATCGAGCATCATCTGAAGATACTG{GG}gt.........................a : 286697 272 : {g}PheSerAlaAlaValGluMetValLeuGlnGluValCysPheLeuGluPheIle : 289 {!}|||! !:!! !:!!||| !:!!|||.!.|||:!!||||||:!!||| ! ||| +{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValIle 286698 : g{T}TTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATT : 286751 290 : GlySerThrPheMetIleCysLeuLeuGluTyrTyrCysIleThr >>>> Target : 305 |||!!!|||!!.! ||||||!!!|||! !||||||! :!:||| 8 GlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeuThr++ 286752 : GGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTACTGACGgt........... : 286801 306 : Intron 2 >>>> AspTrpGluGlnSerAsnThrIleSerLeuThrThrTyrThr : 318 0 bp !!:||||||||||||.!.||||||.!! !! !|||||| ! ++GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCys 286802 : ..............agGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGC : 286918 319 : MetLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuL : 338 ! !||||||:!!|||!!!|||||||||:!!||||||||||||||||||||||||:!!| ThrLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleL 286919 : ACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTC : 286978 339 : euIleGluLys >>>> Target Intron 3 >>>> SerSerAsnValGlyLeu : 347 || !|||::: 74 bp !!! !!!.||||||||| euSerGluGln++ ++CysLeuLysValGlyLeu 286979 : TCTCCGAACaggt.........................agtGCTTAAAAGTCGGCTTG : 287079 348 : SerCysPheMetIleAspTrpPheHisLeuProThrLysThrIleHisGlyLeuIleL : 367 ||| !!:!||||||||||||!:!!.!|||||| !|||||| !!!.|||||||||| SerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleL 287080 : TCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATAC : 287139 368 : euIleIleAlaMetSerAsnAsnProValLysIleThrAlaGlyArgIleAlaAspLe : 386 |||||.!!|||:!!||||||::! !!:!!|||:!!|||||||||!:!||| !||||| euIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLe 287140 : TGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCT : 287196 387 : uSerLeuSerThrPheGlySerValLeuLysSerSerLeuAlaTyr : 401 ||||||||||!:!||| !!|||||| !! ! !!:!|||:!!||| uSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 287197 : CTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 287243 vulgar: gi|815911908|ref|XP_012241395.1| 17 401 . KQ414889.1 284505 287243 + 720 M 25 75 G 0 6 M 36 108 G 0 3 M 49 147 G 0 9 M 129 387 G 0 3 M 14 42 S 0 2 5 0 2 I 0 1407 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284506 287243 720 + . gene_id 2 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284506 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284506 285287 . + . insertions 21 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286698 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287243 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287243 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284506 287243 720 + . alignment_id 2 ; Query gi|815911908|ref|XP_012241395.1| ; Align 284506 18 75 ; Align 284587 43 108 ; Align 284698 79 147 ; Align 284854 128 387 ; Align 285244 257 42 ; Align 286700 272 99 ; Align 286879 305 111 ; Align 287064 342 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 698 Query range: 17 -> 401 Target range: 278558 -> 280456 18 : TyrLysLysAspIleAlaTyrValThrLysHisSerLysTrpIleLeuGlnSerIleG : 37 !::!!.! !||| !||| !..!:!! !:!:::|||.!!|||:!! !!|||| TrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleG 278559 : TGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTG : 278616 38 : lyIleTrpProAlaAla<-><->ValGlyAspValLysLysLeuLeuProLysIleAl : 54 ||:!!|||||| !::! ||| ! !:!!:!!|||:!! ! !! !:!! lyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLe 278617 : GCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCT : 278673 55 : aIleAlaLeuSerAsnPheValLeuLeuPheAlaIleIleProCysIleLeuHisIle : 73 ! !:!!||| !|||:!!:!! !||| !:!::!!|||||| !||| !! ! uAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThr 278674 : CGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACA : 278730 74 : IlePheGluGluLys<->AspThrIleMetArgLeuLysLeuSerGlyLeuLeuSerP : 92 :!:.!!!!::!!! ||| ! !! !!:!:!!|||:!!! !|||! !||||||| ValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerP 278731 : GTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTT : 278790 93 : heCysCysThrSerLeuMetLysTyrTrpAlaLeuThrLeuArgLysProArgIleLy : 111 ||||| ! !:!! !!!:||||||!:: !|||! !! !||| !!:!||| heCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGl 278791 : TCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGG : 278847 112 : sGlyCysIleGluGlnValCysIleAspTrpGlu<-><-><->GlnValGluLeuHis : 127 !|||:!:.!..!.:!! !!! ||||||... ..! !... ... yLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGlu 278848 : CAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaa : 278904 128 : LysAspArgGluIleMetLeuLysTyrGlyArgMetGlyArgAsnLeuThrIleIleC : 147 ::::::|||||||||||| ! ! !!.!|||!!:||||||::!|||.!!|||.!! GluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheS 278905 : gaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCA : 278964 148 : ysAlaValPheMetTyrThrGlyGlyThrIleTyrHisSerIleLeuGlnTyrAlaIl : 166 !!|||! !|||||||||:!!||||||..!.!!||| !:!!:!::!!! !! ! erAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAl 278965 : GCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGC : 279021 167 : eGlyThrPheValAspGluHisAsnArgThrIleLysProLeuValTyrProThrTyr : 185 !! ! ! ! ! ! !!|||..!|||:!:!:! !!! !!.!!:!|||! !||| aValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyr 279022 : AGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTAT : 279078 186 : SerAlaLeuTyrAspValGlnSerSerProIleTyrAspLeuValTyrValIleHisC : 205 !!!.!||| !||| !!::!!!|||||| !:!!!::!!||| ! !!!!:!!.| ArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnC 279079 : CGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAAT : 279138 206 : ysMetCysGlyTyrValMetTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLe : 224 ||:!!..!!.!!:!|||:!:||||||:!!|||!.!|||||||||.!!||| !|||:! ysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaVa 279139 : GCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGT : 279195 225 : uPheAlaThrHisThrCysGlyGlnIleAspIleIleIleSerArgLeuAsnAspLeu : 243 !|||!.!! !|||..!|||||||||.!! |||:!!:!:!!!!:!|||:!! ! ||| lPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeu 279196 : GTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTC : 279252 244 : ValArgGlyGluTyrMetLysGluThrLeuAsnLeuAsn<->ThrArgLeuIleGluI : 262 :!! !|||! ! ! !!:!:!!!:!|||!:! !:!! !|||||| !!!:| IleAspGlyValLysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspI 279253 : ATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATA : 279312 263 : leValGluArgHisLeuArgIleLeu{Ar} >>>> Target Intron 1 >>>> : 271 ||:!!|||!.!||||||!:!||||||{ !} 571 bp leIleGluHisHisLeuLysIleLeu{Gl}++ + 279313 : TCATCGAGCATCATCTGAAGATACTG{GG}gt.........................a : 279910 272 : {g}PheSerAlaAlaValGluMetValLeuGlnGluValCysPheLeuGluPheIle : 289 {!}|||! !:!! !:!!||| !:!!|||.!.|||:!!||||||:!!||| ! ||| +{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValIle 279911 : g{T}TTTATATCGCAAATCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTGATT : 279964 290 : GlySerThrPheMetIleCysLeuLeuGluTyrTyrCysIleThr >>>> Target : 305 |||!!!|||!!.! ||||||!!!||| !||||||! :!!||| 8 GlyCysThrLeuAsnIleCysPheLeuThrTyrTyrLeuLeuThr++ 279965 : GGTTGCACGTTGAACATATGCTTTTTGACATATTATTTACTCACGgt........... : 280014 306 : Intron 2 >>>> AspTrpGluGlnSerAsnThrIleSerLeuThrThrTyrThr : 318 0 bp !!:|||||||||!:!:!!.!!|||.!! ! !|||||| ! ++GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeu 280015 : ..............agGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTA : 280131 319 : MetLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuL : 338 |||!!!|||||||||||||||||||||:!!||||||||||||||||||||||||:!!| MetPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleL 280132 : ATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTC : 280191 339 : euIleGluLys >>>> Target Intron 3 >>>> SerSerAsnValGlyLeu : 347 || !|||::: 74 bp !!!! !!!.||||||:!! euSerGluGln++ ++CysLeuLysValGlyVal 280192 : TCTCCGAACaggt.........................agTGCTTAAAAGTCGGCGTG : 280292 348 : SerCysPheMetIleAspTrpPheHisLeuProThrLysThrIleHisGlyLeuIleL : 367 ||| !!:!||||||||||||!:!!.!|||||| !|||! ! !!!.|||||||||| SerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleL 280293 : TCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATAC : 280352 368 : euIleIleAlaMetSerAsnAsnProValLysIleThrAlaGlyArgIleAlaAspLe : 386 |||||.!!|||:!!||||||::! !!:!!|||:!!|||||||||!:!||| !||||| euIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLe 280353 : TGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCT : 280409 387 : uSerLeuSerThrPheGlySerValLeuLysSerSerLeuAlaTyr : 401 ||||||||||!:!||| !!|||||| !! ! !!:!|||:!!||| uSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 280410 : CTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 280456 vulgar: gi|815911908|ref|XP_012241395.1| 17 401 . KQ414889.1 278558 280456 + 698 M 25 75 G 0 6 M 36 108 G 0 3 M 44 132 G 0 9 M 134 402 G 0 3 M 14 42 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278559 280456 698 + . gene_id 3 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278559 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278559 279340 . + . insertions 21 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280456 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278559 280456 698 + . alignment_id 3 ; Query gi|815911908|ref|XP_012241395.1| ; Align 278559 18 75 ; Align 278640 43 108 ; Align 278751 79 132 ; Align 278892 123 402 ; Align 279297 257 42 ; Align 279913 272 99 ; Align 280092 305 111 ; Align 280277 342 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 572 Query range: 9 -> 394 Target range: 232417 -> 235147 10 : AspTyrThrProArgAsnLeuTyrTyrLysLysAspIleAlaTyrValThrLysHisS : 29 |||! :!!! ! !!..||| !! !! !::!||| !! !||| !! !:!! ! AspSerSerArgAspThrLeuAsnAlaThrArgAspTyrGluTyrSerIleGlnValA 232418 : GACTCGTCCCGCGACACGTTGAACGCTACGCGAGACTACGAGTACAGCATCCAGGTGA : 232475 30 : erLysTrpIleLeuGlnSerIleGlyIleTrpPro<-><->AlaAlaValGlyAspVa : 46 :!:::|||.!!||| ! !!!!:||| !|||||| .!!! !..!..! !. snArgTrpPheLeuThrProMetGlyAlaTrpProArgValThrGluThrSerArgAl 232476 : ACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGC : 232532 47 : lLysLysLeuLeuProLysIleAlaIleAlaLeuSerAsnPheValLeuLeuPheAla : 65 !:!!:!!|||||| !!|||:!: !! ! ! !!!!:!!! !:!!:!!:!!! !:!! aGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHisSerLeuMetIleSerSer 232533 : CCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCG : 232589 66 : IleIleProCysIleLeuHisIleIlePheGluGluLysAspThrIleMetArgLeuL : 85 |||:!!|||||||||||| !|||:!:||||||!!:! !..! ! |||:!!| IleValProCysIleLeuPheIleLeuPheGluAspThrSerLeuGluGluArgMetL 232590 : ATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGA : 232649 86 : ysLeuSerGlyLeuLeuSerPheCysCysThrSerLeuMetLysTyrTrpAlaLeuTh : 104 ||! !! !|||! !:!!||| !! ! ! !.!! !:!!!!.|||!! ..!||| ysSerIleGlyProMetSerHisPheLeuMetGlyGluLeuAsnTyrCysCysLeuLe 232650 : AGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTT : 232706 105 : rLeuArgLysProArgIleLysGlyCysIleGluGlnValCysIleAspTrpGluGln : 123 ! !!:! ! ! !||| !|||:!:||||||||| ||||||..!.!. uAlaLysAlaAsnAspIleLeuTyrCysValGluGlnValLysGlnAspTrpArgAsn 232707 : GGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAAC : 232763 124 : ValGluLeuHisLysAspArgGluIleMetLeuLysTyrGlyArgMetGlyArgAsnL : 143 |||:!! !! ! !!|||!!::!:||||||||| !!!.!!:!:!:||||||:::: ValLysLysProValHisArgAspLeuMetLeuLysAsnAlaLysLeuGlyArgSerI 232764 : GTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGA : 232823 144 : euThrIleIleCysAlaValPheMetTyrThrGlyGlyThrIleTyrHisSerIleLe : 162 !!.!! !|||..!||| !!! !|||:!!||||||! ! ! ! !!.!.! !:!! leAlaCysIleAlaAlaPheCysMetHisThrGlyValGlySerAspGluIleValTh 232824 : TAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCGGCTCCGACGAAATAGTCAC : 232880 163 : uGlnTyrAlaIleGlyThrPhe<->ValAspGluHisAsnArgThrIleLysProLeu : 180 ! ! ! !!!:.!!|||||| |||! .!..!.!:! !:!!!!: ! |||||| rGlyLeuArgMetSerThrPheTyrValGlyAsnGluSerTyrSerMetTyrProLeu 232881 : AGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTA : 232937 181 : ValTyrProThrTyrSerAlaLeuTyrAspValGlnSerSerProIleTyrAspLeuV : 200 !! ! !! !|||!!! !||| |||..!::!! !||||||! !!!!::!!: ProCysThrPheTyrThrLysLeuMetAspThrArgPheSerProThrAsnGluIleM 232938 : CCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTCAGTCCGACGAACGAGATAA : 232997 201 : alTyrValIleHisCysMetCysGlyTyrValMetTyrSerIleThrAlaGlyAlaCy : 219 !!!:!|||:!!!!.|||:!:! !|||!:!:!!:!! !!|||:!!|||!.!|||||||| etPheValLeuGlnCysLeuSerGlyPheIleValAsnSerValThrValGlyAlaCy 232998 : TGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTG : 233054 220 : sGlyLeuAlaAlaLeuPheAlaThrHisThrCysGlyGlnIleAspIleIleIleSer : 238 |||||||!.!|||:!!.!.|||! !|||.!!|||||||||:!::!!:!::!:!!:||| sGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGlnLeuAsnValValMetSer 233055 : CGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCG : 233111 239 : ArgLeuAsnAspLeuValArgGlyGluTyrMetLysGluThrLeuAsnLeuAsnThrA : 258 !:!|||:!!||||||||| !!.!:!! ..!:!!|||! !:!! !.!.! !! LysLeuAspAspLeuValAspAlaLysGlyGlnGluGluArgVal---AlaGlnArgL 233112 : AAATTGGACGATTTGGTGGACGCGAAAGGGCAGGAGGAGAGAGTC---GCGCAGAGGA : 233168 259 : rgLeuIleGluIleValGluArgHisLeuArgIleLeu{Ar} >>>> Target In : 271 :!||| ! |||||||||!.!|||||||||! !|||{!!} 1315 ysLeuGlyPheIleValGluHisHisLeuArgThrLeu{Se}++ 233169 : AGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTA{AG}gt.............. : 233211 272 : tron 1 >>>> {g}PheSerAlaAlaValGluMetValLeuGlnGluValCysPhe : 285 bp {!}|||! ! ! !:!!|||! |||:!!.!. !:!!|||.!. ++{r}PheIleArgAsnIleGluAsnValMetAsnLeuIleCysLeu 233212 : ...........ag{T}TTTATACGGAATATAGAGAACGTTATGAACCTAATATGCCTG : 234564 286 : LeuGluPheIleGlySerThrPheMetIleCysLeuLeuGluTyrTyrCysIleThr : 305 :!!|||!!.:!!|||!!!|||!!.! !!:|||:!!||||||||||||! :!!||| ValGluLeuValGlyCysThrLeuAsnMetCysMetLeuGluTyrTyrLeuLeuThr+ 234565 : GTTGAGTTGGTAGGATGCACGTTGAACATGTGCATGCTCGAGTATTATTTACTCACGg : 234624 306 : >>>> Target Intron 2 >>>> AspTrpGluGlnSerAsnThrIleSerLeu : 314 189 bp !!: ...:::... ...||| + ++GluLysSerLysGlu---------LysLeu 234625 : t.........................agGAAAAgtcgaaggaa---------aaatta : 234831 315 : ThrThrTyrThrMetLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrI : 334 .!!:!!|||..!!!::!!! !:!:|||:!!||||||||||||||||||...||||||| AlaSerTyrValIleValTyrValSerMetThrPheAsnIlePheIlePheCysTyrI 234832 : gCTTCATACGTCATCGTGTACGTGTCCATGACATTtaatatattcatattttgttACA : 234891 335 : leGlyGluLeuLeuIleGluLys >>>> Target Intron 3 >>>> SerSer : 343 |||||||| !|||! !|||:!! 74 bp !!!!!! leGlyGluThrLeuThrGluGln++ ++CysThr 234892 : TCGGAGAGACGCTTACAGAGCAGgt.........................agTGTACC : 234992 344 : AsnValGlyLeuSerCysPheMetIleAspTrpPheHisLeuProThrLysThrIleH : 363 !!.|||||| !!.! !:!|||! !!!:|||!:!!..|||||| !|||||| !! LysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaL 234993 : AAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATAAAACTGCTC : 235052 364 : isGlyLeuIleLeuIleIleAlaMetSerAsnAsnProValLysIleThrAlaGlyAr : 382 !||||||:!!:!!||||||:!!! !|||!:!! !:!!|||||||||||||||!: euGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 235053 : TCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCACCGCTGGAAA : 235109 383 : gIleAlaAspLeuSerLeuSerThrPheGlySerVal : 394 !.!! !.!.:!!|||:!!:!!|||||||||..!||| sPheLeuGlnMetSerValAlaThrPheGlyAspVal 235110 : ATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: gi|815911908|ref|XP_012241395.1| 9 394 . KQ414889.1 232417 235147 + 572 M 31 93 G 0 6 M 129 387 G 0 3 M 84 252 G 1 0 M 16 48 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 33 99 5 0 2 I 0 185 3 0 2 M 5 15 G 3 0 M 29 87 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232418 235147 572 + . gene_id 4 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232418 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232418 233208 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232418 235147 572 + . alignment_id 4 ; Query gi|815911908|ref|XP_012241395.1| ; Align 232418 10 93 ; Align 232517 41 387 ; Align 232907 170 252 ; Align 233159 255 48 ; Align 234525 272 99 ; Align 234813 305 15 ; Align 234828 313 87 ; Align 234989 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 551 Query range: 129 -> 394 Target range: 300015 -> 302036 130 : ArgGluIleMetLeuLysTyrGlyArgMetGlyArgAsnLeuThrIleIleCysAlaV : 149 ||| !|||||||||!:!|||! !! !|||.!!||||||||||||! !:!:||||||| ArgThrIleMetLeuArgTyrValThrMetSerArgAsnLeuThrThrValCysAlaV 300016 : CGTACGATCATGTTGAGATACGTGACTATGAGCAGAAATCTGACGACCGTGTGCGCCG : 300073 150 : alPheMetTyrThrGlyGlyThrIleTyrHisSerIle{Le} >>>> Target In : 162 |||||:!:|||.!!||||||! ! ||||||!!!:!:{:!} 42 b alPheLeuTyrAlaGlyGlyMetSerTyrHisThrVal{Me}+- 300074 : TGTTTCTTTACGCAGGTGGTATGTCGTATCACACGGTG{AT}gc.............. : 300116 163 : tron 1 >>>> {u}GlnTyrAlaIleGlyThrPheValAspGluHisAsnArgThr : 176 p {!}:!! ! ::!! ..! ! ! ! ! ..!.!.||| !||| ++{t}GluLysSerLysAsnTyrThrTyrLysArgGluAsnTyrThr 300117 : ...........ag{G}GAGAAAAGCAAGAATTACACTTACAAAAGGGAGAATTACACT : 300196 177 : IleLysProLeuValTyrProThrTyrSerAlaLeuTyrAspValGlnSerSerProI : 196 !|||||||||!.!|||||| !|||..! !!!! !|||..!|||!!!||||||! TyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnThrSerProT 300197 : TACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAACCAGTCCTA : 300256 197 : leTyrAspLeuValTyrValIleHisCysMetCysGlyTyrValMetTyrSerIleTh : 215 !|||!!::::|||::: ...||||||.!....!.! :!!||||||!:!:!:|| hrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTyrAsnValTh 300257 : CCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTACAACGTGAC : 300313 216 : rAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisThrCysGlyGlnIleAsp : 234 |.!!!.!|||! !.!!|||||||||:!!|||!.!||||||! !||||||||||||.!. rThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGlyGlnIleGln 300314 : AACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGACAGATTCAG : 300370 235 : IleIleIleSerArgLeuAsnAspLeuValArgGlyGluTyrMetLysGluThrLeuA : 254 ||| !!::!!||||||.!.||||||||| ||| ! ! !|||! ! !: IleGlnMetAlaArgLeuGluAspLeuVal------GluArgThrGlyGluLysAspA 300371 : ATACAGATGGCGAGATTGGAGGATCTGGTG------GAGAGGACGGGAGAGAAGGACG : 300424 255 : snLeuAsnThrArgLeuIleGluIleValGluArgHisLeuArgIleLeu{Ar} >> : 271 !! ! ! !! !|||:!!! ||||||..! !|||:!!!:!:!!|||{||} spGlyProAspProLeuValValIleValArgAspHisValLysValLeu{Ar}++ 300425 : ACGGTCCTGATCCTTTGGTCGTTATCGTTCGAGATCACGTGAAGGTTTTA{AG}gt.. : 300479 272 : >> Target Intron 2 >>>> {g}PheSerAlaAlaValGluMetValLeuGln : 281 140 bp {|}|||:!! ! !|||||| ..!|||!:: ++{g}PheAlaLysAsnValGluGluThrLeuArg 300480 : .......................ag{A}TTTGCAAAGAACGTTGAGGAAACTTTGCGT : 300645 282 : GluValCysPheLeuGluPheIleGlySerThrPheMetIleCysLeuLeuGluTyrT : 301 !!: !!|||!!.:!!|||.!!.!!! !||||||.!.!!::!:|||||||||||||||| AspPheCysLeuValGluIlePheGluSerThrLeuIleLeuCysLeuLeuGluTyrT 300646 : GACTTCTGCTTAGTGGAAATCTTCGAGTCCACGCTGATTTTGTGTTTGCTCGAATACT : 300705 302 : yrCysIleThr >>>> Target Intron 3 >>>> AspTrpGluGlnSerAsn : 310 |||||:!:..! 970 bp !!:|||:!!.!.|||:!! yrCysLeuVal++ ++GluTrpGlnAsnSerAsp 300706 : ACTGTTTGGTGgt.........................agGAATGGCAAAATAGCGAC : 301702 311 : ThrIleSerLeuThrThrTyrThrMetLeuLeuIleSerLeuThrPheAsnIlePheI : 330 ||||||:!!:!! !|||!:! !! ||||||! |||!!!|||||||||||||||| ThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAsnIlePheI 301703 : ACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATATTCA : 301762 331 : leLeuCysTyrIleGlyGluLeuLeuIleGluLys >>>> Target Intron 4 : 342 ||!!!|||||||||||||||:!!||| !|||:!! 80 bp lePheCysTyrIleGlyGluIleLeuSerGluGln++ 301763 : TATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt..................... : 301800 343 : >>>> SerSerAsnValGlyLeuSerCysPheMetIleAspTrpPheHisLeuProT : 359 !!!|||.!.:!!|||! !:!!! !:! !|||||||||!:!:!!||||||. ++CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProA 301801 : ....agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAG : 301929 360 : hrLysThrIleHisGlyLeuIleLeuIleIleAlaMetSerAsnAsnProValLysIl : 378 !!|||! ! !:!!! !|||||||||:!!! !!.!!!:|||.!. !!||| !|||:! laLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLe 301930 : CGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACT : 301986 379 : eThrAlaGlyArgIleAlaAspLeuSerLeuSerThrPheGlySerVal : 394 !|||||||||!:!||| !||||||||||||!:!||||||.!!|||||| uThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301987 : TACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: gi|815911908|ref|XP_012241395.1| 129 394 . KQ414889.1 300015 302036 + 551 M 32 96 S 0 2 5 0 2 I 0 38 3 0 2 S 1 1 M 82 246 G 2 0 M 24 72 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 33 99 5 0 2 I 0 966 3 0 2 M 37 111 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300016 302036 551 + . gene_id 5 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300016 300113 . + . KQ414889.1 exonerate:protein2genome:local exon 300016 300113 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300114 300115 . + . intron_id 1 ; splice_site "GC" KQ414889.1 exonerate:protein2genome:local intron 300114 300155 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300154 300155 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300156 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300156 300476 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 300616 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 300615 300616 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300617 300716 . + . KQ414889.1 exonerate:protein2genome:local exon 300617 300716 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300717 300718 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300717 301686 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 301685 301686 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300016 302036 551 + . alignment_id 5 ; Query gi|815911908|ref|XP_012241395.1| ; Align 300016 130 96 ; Align 300157 163 246 ; Align 300403 247 72 ; Align 300618 272 99 ; Align 301687 305 111 ; Align 301878 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 507 Query range: 2 -> 343 Target range: 289672 -> 291485 3 : LeuSerMetGlnHisLysCysAspTyrThrProArgAsnLeuTyrTyrLysLysAspI : 22 :!!||||||!:! !!..! !! !||| !||| ! !|||:!!! !|||| ValSerMetArgSerPheSerSerAspArgProSerAsnAspArgTyrGluThrAspI 289673 : GTCAGCATGCGATCGTTCAGCAGCGATCGTCCGTCGAACGATCGTTACGAAACGGACA : 289730 23 : leAlaTyrValThrLysHisSerLysTrpIleLeuGlnSerIleGlyIleTrpPro<- : 41 || !|||..! !:!! !!! ! |||||||||:!! !!||||||!!:!::||| leArgTyrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrProPh 289731 : TACGTTACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTT : 289787 42 : ><-><->AlaAlaValGlyAspValLysLysLeuLeuProLysIleAlaIleAlaLeu : 57 ::! !!.!.!! !:!!::! ! ! !! !:!: !||| !:!! eValPheSerArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLeuVal 289788 : CGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTA : 289844 58 : SerAsnPheValLeuLeuPheAlaIleIleProCysIleLeuHisIleIlePheGluG : 77 !!! !! :!!|||! !||| !|||:!!|||! !! !! !|||:!!:!!|||...! CysCysSerIleLeuGlnPheIleIleValProPheSerHisHisValLeuPheSerA 289845 : TGTTGCTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCG : 289904 78 : luLysAspThrIleMetArgLeuLysLeuSerGlyLeuLeuSerPheCysCysThrSe : 96 !:!!.|||! !! !! ! !:!!||| ! !|||! !|||!!!||||||! |||!! spAsnAspMetAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuThrTh 289905 : ACAACGACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCAC : 289961 97 : rLeuMetLysTyrTrpAlaLeuThrLeuArgLysProArgIleLysGlyCysIleGlu : 115 !!!!.!.||||||!! !!!!!:!:!!!:! !! !||| !!|||:!::!! rPhePheLysTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysValLys 289962 : GTTCTTCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAA : 290018 116 : GlnValCysIleAspTrpGluGlnValGluLeuHisLysAspArgGluIleMetLeuL : 135 !!.:!! ! !||||||:!!..!:!!... !.!. ! !!|||! |||||||||! HisIleGluArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMetLeuA 290019 : CACATCGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCA : 290078 136 : ysTyrGlyArgMetGlyArgAsnLeuThrIleIleCysAlaValPheMetTyrThrGl : 154 :!|||! !! !|||.!!|||||||||! !! !:!:||||||:!!|||:!!|||! !|| rgTyrValThrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGl 290079 : GATACGTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGG : 290135 155 : yGlyThrIleTyrHisSerIleLeuGlnTyrAlaIleGlyThrPheValAspGluHis : 173 |||| ! !|||:!!!!!:!!:!!! !! ! !! ! !|||:!! ! yGlyLeuSerTyrAsnThrValIleProLeuPheSerLysLysSerValAsn---Gly 290136 : TGGTCTGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAAGAGCGTGAAC---GGT : 290189 174 : AsnArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuTyrAspValGlnS : 193 ||| !||||||!:!||||||..!|||||| !|||..!! !!!!!:!|||||||||! AsnValThrIleArgProLeuThrTyrProGlyTyrGluGluPhePheAspValGlnL 290190 : AACGTGACTATCAGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGA : 290249 194 : erSerProIleTyrAspLeuValTyrValIleHisCysMetCysGlyTyrValMetTy : 212 .!|||||| |||!!::!!|||!:! !!!:||||||:!:! !! ! :!!! ! ysSerProAlaTyrGluIleValPheCysMetHisCysValTyrValMetIleThrAl 290250 : AGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGC : 290306 213 : rSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisThrCysGly : 231 !:!|||||| !!.!|||! !.!!|||.!!.!!:!!||||||||||||||||||||| aAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGly 290307 : GAACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGT : 290363 232 : GlnIleAspIleIleIleSerArgLeuAsnAspLeuValArgGlyGluTyrMetLysG : 251 |||||| ! ||| !! !!!||||||.!.||||||..!!:! !!! ! :!! !| GlnIleLysIleGlnThrThrArgLeuGluAspLeuThrLysArgGlyMetLeuLeuG 290364 : CAGATTAAGATACAAACGACGCGGCTGGAGGATCTGACAAAGAGAGGGATGCTGTTGG : 290423 252 : luThrLeuAsnLeuAsnThrArgLeuIleGluIleValGluArgHisLeuArgIleLe : 270 ||! ! ...:!!!:! !|||||| ! :!!|||... !!|||:!!..!||||| luLys---GlyValSerAspArgLeuAlaValValValSerGlyHisValGluIleLe 290424 : AGAAG---GGAGTGAGTGATCGTTTGGCGGTTGTTGTGAGCGGTCACGTGGAGATCTT : 290477 271 : u{Ar} >>>> Target Intron 1 >>>> {g}PheSerAlaAlaValGluMet : 278 |{!:} 655 bp {!}|||!!! ! !:!!|||! u{Ly}++ ++{s}PheThrArgMetIleGluSer 290478 : G{AA}gt.........................ag{A}TTCACGAGGATGATCGAAAGC : 291156 279 : ValLeuGlnGluValCysPheLeuGluPheIleGlySerThrPheMetIleCysLeuL : 298 !.!|||!!.|||:!!! !!!.:!!||| ! |||! !|||||| ! :!::!!||||||: AlaLeuHisGluIlePheLeuIleGluValIleValSerThrValLeuLeuCysLeuI 291157 : GCGTTGCATGAAATATTCTTGATAGAAGTAATAGTATCCACTGTGTTACTATGCTTGA : 291216 299 : euGluTyrTyrCysIle >>>> Target Intron 2 >>>> ThrAspTrpGlu : 307 !!|||||| !! !!: 135 bp !!:|||||| leGluTyrLeuLeuMet-+ ++---GluTrpGlu 291217 : TCGAATATCTCTTAATGat.........................ag---GAATGGGAG : 291375 308 : GlnSerAsnThrIleSerLeuThrThrTyrThrMetLeuLeuIleSerLeuThrPheA : 327 ...|||:!!:!!|||.!!:!! !||||||..!! ||||||! !|||!!!||||||| SerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerPheThrPheA 291376 : AGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTTTCACTTTCA : 291435 328 : snIlePheIleLeuCysTyrIleGlyGluLeuLeuIleGluLysSerSer : 343 |||||.!.|||!!!||||||:!!||||||||||||:!!! !:!! !||| snIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGlnValSer 291436 : ACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAGGTAAGT : 291485 vulgar: gi|815911908|ref|XP_012241395.1| 2 343 . KQ414889.1 289672 291485 + 507 M 38 114 G 0 9 M 131 393 G 1 0 M 80 240 G 1 0 M 17 51 S 0 2 5 0 2 I 0 651 3 0 2 S 1 1 M 32 96 5 0 2 I 0 131 3 0 2 G 1 0 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289673 291485 507 + . gene_id 6 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 289673 290481 . + . KQ414889.1 exonerate:protein2genome:local exon 289673 290481 . + . insertions 9 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 290482 290483 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 290482 291136 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 291135 291136 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 291137 291233 . + . KQ414889.1 exonerate:protein2genome:local exon 291137 291233 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291234 291235 . + . intron_id 2 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 291234 291368 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 291367 291368 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 291369 291485 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291485 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289673 291485 507 + . alignment_id 6 ; Query gi|815911908|ref|XP_012241395.1| ; Align 289673 3 114 ; Align 289796 41 393 ; Align 290189 173 240 ; Align 290429 254 51 ; Align 291138 272 96 ; Align 291369 305 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 436 Query range: 23 -> 370 Target range: 259772 -> 262012 24 : TyrValThrLysHisSerLysTrpIleLeuGlnSerIleGlyIleTrpPro<-><->A : 41 ||| ! !:!! !!:!::!|||.!!|||:!! !!|||||| !|||||| : TyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerS 259773 : TATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCAT : 259830 42 : laAlaValGlyAspValLysLysLeuLeuProLysIleAlaIleAlaLeuSerAsnPh : 60 !!:!!..! ! :!!:!!|||:!!:!! !! ||| !||| !:!!!!! !! erSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSe 259831 : CCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAG : 259887 61 : eValLeuLeuPheAlaIleIleProCysIleLeuHisIleIlePheGluGluLysAsp : 79 !..!:!!||| !!.!!:!:|||||||||:!!||||||!!::!!.!!|||:!!:!!..! rThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSer 259888 : TACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGT : 259944 80 : ThrIleMetArgLeuLysLeuSerGlyLeuLeuSerPheCysCysThrSerLeuMetL : 99 ! !|||!:! !|||:!! !|||! !|||!!! !!! ! !..!.!!! !!!:! LeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleA 259945 : TTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTA : 260004 100 : ysTyrTrpAlaLeuThrLeuArgLysProArgIleLysGlyCysIleGluGlnValCy : 118 !.||| .!!||| !|||||| ! !||| .!!|||:!:|||!!.||| snTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGl 260005 : ATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGA : 260061 119 : sIleAspTrpGluGlnValGluLeuHisLysAspArgGluIleMetLeuLysTyrGly : 137 ! !||||||..! :!! ! !.!.||||||!:!.!.:!:||||||!:!|||!.! uAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAla 260062 : GAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCG : 260118 138 : ArgMetGlyArgAsnLeuThrIleIleCysAlaValPheMetTyrThrGlyGlyThrI : 157 !:!.!.|||||| !!:!!.!! ! !||||||!.!|||:!! ! !|||! ! ! LysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuC 260119 : AAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGT : 260178 158 : leTyrHisSerIleLeuGlnTyrAlaIleGlyThrPhe<->ValAspGluHisAsnAr : 175 !!:! !! !:!! ! !! ::!! !! !..!.!. |||! .!..!.!..|| ysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrAr 260179 : GCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAG : 260235 176 : gThrIleLysProLeuValTyrProThrTyrSerAlaLeuTyrAspValGlnSerSer : 194 |! !:!! ! ! !||| !! ! !!..!|||!.!! !||| :!!|||.!...!||| gIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSer 260236 : GATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGT : 260292 195 : ProIleTyrAspLeuValTyrValIleHisCysMetCysGlyTyrValMetTyrSerI : 214 |||!!: !!!!::!!||| !|||:!:!!.! !:!:! |||!:!:!!:!! !!|||! ProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerS 260293 : CCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGA : 260352 215 : leThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisThrCysGlyGlnIl : 233 !|||!.!||| !! !.!!|||||||||:!!.!..!!.!!|||.!!|||||||||:! erThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLe 260353 : GCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTT : 260409 234 : eAspIleIleIleSerArgLeuAsnAspLeuValArgGlyGluTyrMetLysGluThr : 252 ::!!:!::!!!!:..! !!:!!!..!!:!!!||| !! !..! ! !:!:!!! ! uAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLys 260410 : GAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAA : 260466 253 : LeuAsnLeuAsnThrArgLeuIleGluIleValGluArgHisLeuArgIleLeuArgP : 272 ! !! ! !! !..!:!! !! !|||||||||!.!||||||||| !|||! !! LysAlaProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeuThr* 260467 : AAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTCACGT : 260526 273 : heSerAlaAlaValGluMetValLeuGlnGluValCysPheLeuGluPheIleGlySe : 291 ..! ! !! ! ! !!:!!!:! !! ! !|||:!! :!!||||| **AspLeuPheAspIleThrPheValArg***ArgIlePheIleIleThrValGlySe 260527 : AAGATTTGTTTGATATTACTTTTGTACGATAAAGGATTTTTATAATTACGGTAGGATC : 260583 292 : rThrPheMetIleCysLeu{Le} >>>> Target Intron 1 >>>> {u}Glu : 299 ||||...::: |||{:!} 1109 bp {!} rThrIleIle***LysLeu{Il}++ -+{e}Tyr 260584 : Tactataatttgaaaatta{at}gt.........................tg{a}tat : 261716 300 : TyrTyrCysIleThrAspTrpGluGlnSerAsnThrIleSerLeuThrThrTyrThrM : 319 :::::: ::: !!:|||! :!!..!:!!! ! !!:!|||:!!|||||| !| PhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheM 261717 : ttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCA : 261776 320 : etLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuLe : 338 ||:!!||||||:!!:!! !||||||:!!||||||:!!|||||||||||||||:!!|| etMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLe 261777 : TGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACT : 261833 339 : uIleGluLys >>>> Target Intron 2 >>>> SerSerAsnValGlyLeuS : 348 |! |||:!! 81 bp !!!|||!!.|||||| ! uThrGluGln++ ++CysSerLysValGlyAspV 261834 : AACGGAACAGgt.........................agTGCTCGAAAGTTGGTGACG : 261944 349 : erCysPheMetIleAspTrpPheHisLeuProThrLysThrIleHisGlyLeuIleLe : 367 ! !!:!|||! !:!!|||!:!:!!|||||| !|||!:!|||! !! !|||||||| alValTyrMetThrAsnTrpTyrTyrLeuProAspLysSerIleLeuAspLeuIleLe 261945 : TTGTTTACATGACAAACTGGTATTATTTACCTGATAAAAGTATCCTTGATTTGATTTT : 262001 368 : uIleIleAla : 370 |||||||||| uIleIleAla 262002 : GATCATTGCA : 262012 vulgar: gi|815911908|ref|XP_012241395.1| 23 370 . KQ414889.1 259772 262012 + 436 M 17 51 G 0 6 M 129 387 G 0 3 M 128 384 S 0 2 5 0 2 I 0 1105 3 0 2 S 1 1 M 43 129 5 0 2 I 0 77 3 0 2 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259773 262012 436 + . gene_id 7 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259773 260605 . + . KQ414889.1 exonerate:protein2genome:local exon 259773 260605 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260606 260607 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 260606 261714 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261713 261714 . + . intron_id 0 ; splice_site "tg" KQ414889.1 exonerate:protein2genome:local cds 261715 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261715 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262012 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262012 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259773 262012 436 + . alignment_id 7 ; Query gi|815911908|ref|XP_012241395.1| ; Align 259773 24 51 ; Align 259830 41 387 ; Align 260220 170 384 ; Align 261716 299 129 ; Align 261926 342 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 430 Query range: 17 -> 394 Target range: 256634 -> 258624 18 : TyrLysLysAspIleAlaTyrValThrLysHisSerLysTrpIleLeuGlnSerIleG : 37 !:!|||!.. !!! !! !||| ! !:!! !:!::!|||.!!|||:!! !!|||| PheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleG 256635 : TTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAG : 256692 38 : lyIleTrpPro<-><->AlaAlaValGlyAspValLysLysLeuLeuProLysIleAl : 54 || !|||||| :!!:!!..! ! !:!!:!!::! !:!! !!! :!! lyAlaTrpProProSerSerSerThrThrThrLeuGluArgAsnValSerIleValLe 256693 : GCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTT : 256749 55 : aIleAlaLeuSerAsnPheValLeuLeuPheAlaIleIleProCysIleLeuHisIle : 73 !! ! !:!!!!! !! ! !:!!||||||.!!:!:|||||||||:!:||||||:!! uAsnIleValCysTyrGlySerIleLeuPheThrLeuIleProCysLeuLeuHisVal 256750 : GAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTA : 256806 74 : IlePheGluGluLysAspThrIleMetArgLeuLysLeuSerGlyLeuLeuSerPheC : 93 .!!.!!!!:!!: ! ..! ! |||::::::||| |||! !:!!||| !! PheLeuAspAspAspSerPheTyrMetLysValLysAsnPheGlyProMetSerHisT 256807 : TTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATT : 256866 94 : ysCysThrSerLeuMetLysTyrTrpAlaLeuThrLeuArgLysProArgIleLysGl : 112 ! !! !|||! ! !!.||| ! !||| !|||!:! ! ! !|||::: rpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTy 256867 : GGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTA : 256923 113 : yCysIleGluGlnValCysIleAspTrpGluGlnValGluLeuHisLysAspArgGlu : 131 !|||:!!|||!!.:!! ! ||||||..!..!|||..! !.!.||||||!:!:!! rCysValGluHisIleGluThrAspTrpArgMetValArgArgGluLysAspGlnGln 256924 : CTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAA : 256980 132 : IleMetLeuLysTyrGlyArgMetGlyArgAsnLeuThrIleIleCysAlaValPheM : 151 :!:|||:!!||| !!!.!|||.!.|||||| !!:!!.!!! !.!!||||||!.!.!!| ValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleM 256981 : GTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCA : 257040 152 : etTyrThrGly<->GlyThrIleTyrHisSerIleLeuGlnTyrAlaIleGlyThrPh : 169 || ! !:!||| ...::: ||| !! ! !!.!! !! ! etGlnSerGlyValPheCysPhePheValSerSerAlaLeuAsnThrGluIleIleHi 257041 : TGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCA : 257097 170 : eValAspGluHisAsnArgThrIleLysProLeuValTyrProThrTyrSerAlaLeu : 188 !|||! .!..!.!..! !! !:!:::! !||| ! ! !!..!|||!.! !||| sValGlyAsnGluThrThrIleValArgValLeuProValThrValTyrLysLysLeu 257098 : CGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTG : 257154 189 : TyrAspValGlnSerSerProIleTyrAspLeuValTyrValIleHisCysMetCysG : 208 ! :!!|||.!...!||||||! !!!!::!!||| ! !!!!:!!. ! !! . LeuAsnValAspGlnSerProThrAsnGluIleValValPheMetGlnThrTrpSerS 257155 : TTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGT : 257214 209 : lyTyrValMetTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaTh : 227 .! !:!! ! !!!!! !|||!.!.!! !! !.!!|||||||||:!!|||||||| erIleIleAlaThrThrSerThrValSerIlePheSerLeuAlaAlaValPheAlaTh 257215 : CGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCAC : 257271 228 : rHisThrCysGlyGlnIleAspIleIleIleSerArgLeuAsnAspLeuValArgGly : 246 ||||.!!! !||||||:!: !:!::!!!!:||| !!:!!!..!!:!!!|||!.!! ! rHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGluPheValAsnGlu 257272 : TCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAG : 257328 247 : GluTyrMetLysGluThrLeuAsnLeuAsnThrArgLeuIleGluIleValGluArgH : 266 ..! ! :::||| !! !!:!:!! !! !|||||||||!.!| SerArgAsnArgGluLysThrPheProPheLysGlnIleGlyValIleValGluHisH 257329 : TCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGCATC : 257388 267 : isLeuArgIleLeu{Ar} >>>> Target Intron 1 >>>> {g}PheSerAl : 274 ||||||||:!:|||{||} 760 bp {|}! ! ! isLeuArgValLeu{Ar}++ +-{g}CysValMe 257389 : ATTTAAGAGTGCTG{AG}gt.........................ac{G}TGCGTTAT : 258172 275 : aAlaValGluMetValLeuGlnGluValCysPheLeuGluPheIleGlySerThrPhe : 293 ! ! !.!.:!!:!!! !|||.!.! !! !! ! !:!! !..!! ! !!.!. tTyrArgAsnLeuLeuGlnGlnAsnGly***AsnArgThrTyrAsnAsnPheProIle 258173 : GTACCGAAACCTGTTGCAACAAAATGGTTAAAATCGTACCTACAATAATTTTCCTATA : 258229 294 : MetIleCysLeuLeuGluTyrTyrCysIleThrAspTrpGluGlnSerAsnThrIleS : 313 ! ::: :::||| ... :::|||... !...::: : HisSerTyrSerValIlePheTyrTyrPheGlnGluTrpSerThrGlnAspIleGlnA 258230 : CACAGctattctgttattttttattattttcaggaATGGTCTACGCaagatattcaaa : 258289 314 : erLeuThrThrTyrThrMetLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCy : 332 ::|||::::::||| !|||:!!||||||||||||:::||||||||||||::::::|| snLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValIleCy 258290 : atttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaatatg : 258346 333 : sTyrIleGlyGluLeuLeuIleGluLys >>>> Target Intron 2 >>>> S : 342 |||||||||||||:!!|||! !|||:!! 90 bp ! sTyrIleGlyGluIleLeuThrGluGln++ ++C 258347 : ttACATAGGTGAAATATTAACAGAACAGgt.........................agT : 258466 343 : erSerAsnValGlyLeuSerCysPheMetIleAspTrpPheHisLeuProThrLysTh : 361 !!!.!!!.|||||| ! ! !!:!|||! !||||||!:!:!!|||||| !|||! ysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspLysAr 258467 : GCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAG : 258523 362 : rIleHisGlyLeuIleLeuIleIleAlaMetSerAsnAsnProValLysIleThrAla : 380 !|||! !! !|||||||||:!!|||||| |||!:! !|||:!!||||||||| gIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleThrAla 258524 : AATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCG : 258580 381 : GlyArgIleAlaAspLeuSerLeuSerThrPheGlySerVal : 394 |||:::... ::!|||:!!! !||||||.!!..!||| GlyLysPhePheHisMetSerIleTyrThrPheSerAspVal 258581 : ggaaaattctttcacatGTCCATTTACACATTCAGCGATGTG : 258624 vulgar: gi|815911908|ref|XP_012241395.1| 17 394 . KQ414889.1 256634 258624 + 430 M 23 69 G 0 6 M 114 342 G 0 3 M 116 348 S 0 2 5 0 2 I 0 756 3 0 2 S 1 1 M 70 210 5 0 2 I 0 86 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256635 258624 430 + . gene_id 8 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256635 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256635 257404 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 258164 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258163 258164 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 258165 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258165 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256635 258624 430 + . alignment_id 8 ; Query gi|815911908|ref|XP_012241395.1| ; Align 256635 18 69 ; Align 256710 41 342 ; Align 257055 155 348 ; Align 258166 272 210 ; Align 258466 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 402 Query range: 23 -> 304 Target range: 266637 -> 267558 24 : TyrValThrLysHisSerLysTrpIleLeuGlnSerIleGlyIleTrpPro<-><->A : 41 ||| ! !:!! !:!::!|||.!!|||:!! !!|||||| !|||||| : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuS 266638 : TACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGT : 266695 42 : laAlaValGlyAspValLysLysLeuLeuProLysIleAlaIleAlaLeuSerAsnPh : 60 !! !..!..! ! :!!:!!::!:!!:!! !! ! ! !|||!.!:!!!!! !!! erLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCy 266696 : CACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTG : 266752 61 : eValLeuLeuPheAlaIleIleProCysIleLeuHisIleIlePheGluGluLysAsp : 79 ! !:!!||||||.!!:!!|||||||||:!:!!!|||:!!:!!.!.|||!!::!!..! sSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSer 266753 : CTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGT : 266809 80 : ThrIleMetArgLeuLysLeuSerGlyLeuLeuSerPheCysCysThrSerLeuMetL : 99 ! ! !! !!:!:!!|||:!!! !|||! !|||||| !!! ! !..!.!! !!!:! IleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleA 266810 : ATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTA : 266869 100 : ysTyrTrpAlaLeuThrLeuArgLysProArgIleLysGlyCysIleGluGlnValCy : 118 !.||| .!!||| !||||||!.. !..!|||:::||||||:!!|||!!.:!! snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 266870 : ACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCA : 266926 119 : sIleAspTrpGluGlnValGluLeuHisLysAspArgGluIleMetLeuLysTyrGly : 137 ! !||||||..! ||| !! :!!|||!:!:!!:!:||||||||| !!!.! nThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAla 266927 : AACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCG : 266983 138 : ArgMetGlyArgAsnLeuThrIleIleCysAlaValPheMetTyrThrGlyGlyThrI : 157 |||!!:|||||| !!:!!.!!|||.!!||||||!.!|||||| ! !|||! ! ! ArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuG 266984 : AGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCG : 267043 158 : leTyrHisSerIleLeuGlnTyrAlaIleGlyThrPhe<->ValAspGluHisAsnAr : 175 !||| ! !||| ! !!:!.!!!!: !||| ! |||! !.!..!.!.!|| lyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrAr 267044 : GCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAG : 267100 176 : gThrIleLysProLeuValTyrProThrTyrSerAlaLeuTyrAspValGlnSerSer : 194 |! !:!! ! ! !||| !! ! !!..!|||!.! !:!! !! |||.!.!!!||| gIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSer 267101 : GATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGC : 267157 195 : ProIleTyrAspLeuValTyrValIleHisCysMetCysGlyTyrValMetTyrSerI : 214 |||! !!!!::!!||| !||| !!!.! !:!:! |||!:!:!!:!! !!|||! ProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerS 267158 : CCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGA : 267217 215 : leThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisThrCysGlyGlnIl : 233 !..!!.!||||||! !.!!|||||||||:!!||||||.!!|||.!!|||||||||:! erValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLe 267218 : GCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCT : 267274 234 : eAspIleIleIleSerArgLeuAsnAspLeuValArgGlyGluTyrMetLysGluThr : 252 :..!:!::!:!!:! ! !!:!!!!.!!:!!!|||!.! !!... !...!.! ! uSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLys 267275 : GAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAG : 267331 253 : LeuAsnLeuAsnThrArgLeuIleGluIleValGluArgHisLeuArgIleLeu{Ar} : 271 ! !! ! ! !!:!:!! !! !:!!||||||!.!|||||||||:!!|||{!!} AsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se} 267332 : AACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG} : 267388 272 : >>>> Target Intron 1 >>>> {g}PheSerAlaAlaValGluMetValLe : 280 69 bp {!}|||! !||| !:!!|||! |||:! ++ ++{r}PheIleAlaArgIleGluSerValMe 267389 : gt.........................ag{C}TTCATAGCACGTATCGAAAGTGTAAT : 267484 281 : uGlnGluValCysPheLeuGluPheIleGlySerThrPheMetIleCysLeuLeuGlu : 299 !...|||:!!||||||:!!|||!!..!! !!!!|||.!. ||||||:!!|||... tSerGluIleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSer 267485 : GAGCGAAATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGC : 267541 300 : TyrTyrCysIleThr : 304 |||||| !:!!||| TyrTyrIleLeuThr 267542 : TATTATATCCTTACG : 267558 vulgar: gi|815911908|ref|XP_012241395.1| 23 304 . KQ414889.1 266637 267558 + 402 M 17 51 G 0 6 M 129 387 G 0 3 M 101 303 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266638 267558 402 + . gene_id 9 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266638 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266638 267389 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267558 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267558 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266638 267558 402 + . alignment_id 9 ; Query gi|815911908|ref|XP_012241395.1| ; Align 266638 24 51 ; Align 266695 41 387 ; Align 267085 170 303 ; Align 267460 272 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 399 Query range: 14 -> 271 Target range: 208185 -> 208962 15 : AsnLeuTyrTyrLysLysAspIleAlaTyrValThrLysHisSerLysTrpIleLeuG : 34 ||| ! !!||||||!!.|||:!:::!!:! !..!:::! !:! !|||! |||: AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 35 : lnSerIleGlyIleTrpProAlaAlaValGlyAsp<-><->ValLysLysLeuLeuPr : 51 !!! !|||||| !|||||| !:!!:!!! ! ! :!!:!!!!. !! !! ysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHi 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCA : 208300 52 : oLysIleAlaIleAlaLeuSerAsnPheValLeuLeuPheAlaIleIleProCysIle : 70 !! :!! !! !!.!||||||:!!! !:!!||| !||| !:!:|||||| ! ! sIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGly 208301 : TATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGC : 208357 71 : LeuHisIleIlePheGluGluLysAspThrIleMetArgLeuLysLeuSerGlyLeuL : 90 :!! ! |||.!!! !! :!!||| ! ! !:!||||||:!!!!!.!! !| MetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaL 208358 : ATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTC : 208417 91 : euSerPheCysCysThrSerLeuMetLysTyrTrpAlaLeuThrLeuArgLysProAr : 109 ||||||||! ! ! !:!!!!!! !|||||| ! !:!!|||:!!|||:!! ! euSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAs 208418 : TGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGA : 208474 110 : gIleLysGlyCysIleGluGlnValCysIleAspTrpGluGlnValGluLeuHisLys : 128 !|||::! !|||:!!||| ! ||| !||||||..!.!.||||||! !.!.:!! pIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGlu 208475 : CATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAG : 208531 129 : AspArgGluIleMetLeuLysTyrGlyArgMetGlyArgAsnLeuThrIleIleCysA : 148 ||||||:!!||||||||| ! !!!.!!!!.!.!.!|||!!.|||! !:!:||||||! AspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysG 208532 : GACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCG : 208591 149 : laValPheMetTyrThrGlyGlyThrIleTyrHisSerIleLeuGlnTyrAlaIleGl : 167 .!!.!||||||||| !||| ...|||::: ! !|||! ! !.!! !! lyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAs 208592 : GAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGA : 208648 168 : yThrPheValAspGlu<->HisAsnArgThrIleLysProLeuValTyrProThrTyr : 185 !! ! !!|||!!:||| !||| !||| !!:! !||||||||||||..! ! pLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValPro 208649 : CAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCT : 208705 186 : SerAlaLeuTyrAspValGlnSerSerProIleTyrAspLeuValTyrValIleHisC : 205 !.! !:!! ||||||!:!! !||||||:!: !!!!::!! !!|||..!:!!!!.! LysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnL 208706 : AAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAAT : 208765 206 : ysMetCysGlyTyrValMetTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLe : 224 :!!! |||!:!||| :!!!:!||||||!.!||||||||||||||||||||||| euLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLe 208766 : TGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCT : 208822 225 : uPheAlaThrHisThrCysGlyGlnIleAspIleIleIleSerArgLeuAsnAspLeu : 243 |.!!|||! !|||.!!|||||||||:!:.!.|||:!:!!:||| !!:!!.!. ! ||| uLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeu 208823 : GCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTG : 208879 244 : ValArgGlyGluTyrMetLysGluThrLeuAsnLeuAsnThrArgLeuIleGluIleV : 263 ||| !|||..! ! :!!|||! ! ||||||:!! !|||||| !.!.|||| ValAspGlyArgGluAspGluGluLys---AsnLeuAspGlnArgLeuAlaAsnIleV 208880 : GTCGATGGACGGGAGGACGAGGAGAAG---AATTTGGATCAGAGGTTGGCTAATATCG : 208936 264 : alGluArgHisLeuArgIleLeuArg : 271 |||||!:!|||:!!|||:!::!!!:! alGluGlnHisValArgValIleLys 208937 : TGGAGCAGCATGTTCGAGTGATCAAG : 208962 vulgar: gi|815911908|ref|XP_012241395.1| 14 271 . KQ414889.1 208185 208962 + 399 M 31 93 G 0 6 M 127 381 G 0 3 M 80 240 G 1 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 208962 399 + . gene_id 10 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208186 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208962 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208186 208962 399 + . alignment_id 10 ; Query gi|815911908|ref|XP_012241395.1| ; Align 208186 15 93 ; Align 208285 46 381 ; Align 208669 173 240 ; Align 208909 254 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 372 Query range: 17 -> 272 Target range: 212854 -> 213625 18 : TyrLysLysAspIleAlaTyrValThrLysHisSerLysTrpIleLeuGlnSerIleG : 37 |||:!!||| ::: ! !:!:::|||:!!|||:!! !!! | TyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrG 212855 : TACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGG : 212912 38 : lyIleTrpPro<-><->AlaAlaValGlyAspValLysLysLeuLeuProLysIleAl : 54 ||:!:|||||| :!! !|||..! :!!:!!||| !:!! !!::!:!:!. lyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIleAlaArgLeuVa 212913 : GTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGT : 212969 55 : aIleAlaLeuSerAsnPheValLeuLeuPheAlaIleIleProCysIleLeuHisIle : 73 !! !.!!:!!!!! !! !:!!:!! !!:! !:!!|||||||||! !|||:!!:!: lAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrVal 212970 : CAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTG : 213026 74 : IlePheGluGluLysAspThrIleMetArgLeuLysLeuSerGlyLeuLeuSerPheC : 93 .!!.!!!!:! !:::::: ... ...:!!:!!|||! !|||:!!!!!:!!|||| PheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheC 213027 : TTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTT : 213086 94 : ysCysThrSerLeuMetLysTyrTrpAlaLeuThrLeuArgLysProArgIleLysGl : 112 || .!!:!!||| !|||||| :!!|||! !|||!.! ! !|||::: ysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgTh 213087 : GCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTAC : 213143 113 : yCysIleGluGlnValCysIleAspTrpGluGlnValGluLeuHisLysAspArgGlu : 131 !|||:!!|||!!.:!! !||||||:!!.!.:!! !! !.!.:!!|||!:!||| rCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGlu 213144 : GTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAA : 213200 132 : IleMetLeuLysTyrGlyArgMetGlyArgAsnLeuThrIleIleCysAlaValPheM : 151 |||||| ! ! !!!.!!!!.!.|||!:!!..:!!..!! !||||||||| !!|||| IleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPhePheM 213201 : ATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCA : 213260 152 : etTyrThrGlyGlyThrIleTyrHisSerIleLeuGlnTyrAlaIleGlyThrPheVa : 170 ||||||||||| !|||.!!||| ! !:!!:!!! ! !::! ! !! !.!.|| etTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLysMetVa 213261 : TGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGT : 213317 171 : lAspGluHis<->AsnArgThrIleLysProLeuValTyrProThrTyrSerAlaLeu : 188 |! ||| !! ||| !|||.!!!:!! !:!!||| !|||..!! !!! !:!! lAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSerArgPheIle 213318 : AGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATC : 213374 189 : TyrAspValGlnSerSerProIleTyrAspLeuValTyrValIleHisCysMetCysG : 208 !||||||!:!! !||||||:!: !!!!::!! !!!:!:!!|||!!. !!!:..!| ValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleIleAlaG 213375 : GTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTG : 213434 209 : lyTyrValMetTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaTh : 227 || :!!!!::!!:!!|||.!!!.!! !||||||.!!|||||||||:!!||||||.. lyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPheAlaVa 213435 : GAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGT : 213491 228 : rHisThrCysGlyGlnIleAspIleIleIleSerArgLeuAsnAspLeuValArgGly : 246 !|||.!!|||||||||!!:! !|||:!:!!:||| !!|||.!. !!|||:!! !||| lHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGly 213492 : TCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGT : 213548 247 : GluTyrMetLysGluThrLeuAsnLeuAsnThrArgLeuIleGluIleValGluArgH : 266 ..! ! ! !!:! !|||:!!:!! !|||:!! ! ||||||.!.!:!| Arg---GluAspMetSerLysAsnValAspAspArgIleAlaValIleValAsnGlnH 213549 : AGA---GAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGC : 213605 267 : isLeuArgIleLeuArgPhe : 272 ||:!!|||||||||!:!!:: isValArgIleLeuLysTrp 213606 : ATGTGCGGATACTGAAGTGG : 213625 vulgar: gi|815911908|ref|XP_012241395.1| 17 272 . KQ414889.1 212854 213625 + 372 M 23 69 G 0 6 M 133 399 G 0 3 M 74 222 G 1 0 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212855 213625 372 + . gene_id 11 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212855 213625 . + . KQ414889.1 exonerate:protein2genome:local exon 212855 213625 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212855 213625 372 + . alignment_id 11 ; Query gi|815911908|ref|XP_012241395.1| ; Align 212855 18 69 ; Align 212930 41 399 ; Align 213332 174 222 ; Align 213554 249 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 316 Query range: 23 -> 271 Target range: 274383 -> 275136 24 : TyrValThrLysHisSerLysTrpIleLeuGlnSerIleGlyIleTrpProAlaAlaV : 43 ||| ! !:!! !:!::!|||.!!|||:!! !!|||||| |||||| !||| TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaS 274384 : TACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCT : 274441 44 : alGlyAspValLys<-><->LysLeuLeuProLysIleAlaIleAlaLeuSerAsnPh : 60 ! ! !..!||| ::!:!!||| !! ! ::: ||| ||| !!! erProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCy 274442 : CGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTG : 274498 61 : eValLeuLeuPheAlaIleIleProCysIleLeuHisIleIlePheGluGluLysAsp : 79 ! !!:!!|||! !.!!:!!|||||| !!|||!!!|||||||||.!.! !!!::!!..! sPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGluSer 274499 : CTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGT : 274555 80 : ThrIleMetArgLeuLysLeuSerGlyLeuLeuSerPheCysCysThrSerLeuMetL : 99 ! !:!!!:!||||||||| !|||! !|||.!! !!! ! !! !.!! !!!:! LeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleA 274556 : CTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTA : 274615 100 : ysTyrTrpAlaLeuThrLeuArgLysProArgIleLysGlyCysIleGluGlnValCy : 118 !.||| .!!||| !||||||!.. !..!|||:::||||||:!:|||!!.:!! snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 274616 : ATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCA : 274672 119 : sIleAspTrpGluGlnValGluLeuHisLysAspArgGluIleMetLeuLysTyrGly : 137 ! !||||||..! ||| !! :!!|||!:!:!!:!:||||||||| !!!.! nThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsnAla 274673 : AACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCG : 274729 138 : ArgMetGlyArgAsnLeuThrIleIleCysAlaValPheMetTyrThrGlyGlyThrI : 157 !:!!!:|||||| !!:!!.!!|||.!!||||||!.!|||||| ! !|||! ! ! LysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuC 274730 : AAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCT : 274789 158 : leTyrHisSerIleLeuGlnTyrAlaIleGlyThrPhe<->ValAspGluHisAsnAr : 175 !||| ! !||| ! !!:!.!!!!: !||| !! |||! .!..!.!.!|| ysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrAr 274790 : GTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAG : 274846 176 : gThrIleLysProLeuValTyrProThrTyrSerAlaLeuTyrAspValGlnSerSer : 194 ||||:!: ! !||| !! ! !.!!|||!.! !:!! !! |||.!.!!!||| gThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThrSer 274847 : AACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGT : 274903 195 : ProIleTyrAspLeuValTyrValIleHisCysMetCysGlyTyrValMetTyrSerI : 214 |||! !!!!::!!||| !!.! !!.! !:!!! |||!:!:!!:!! !!|||! ProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerS 274904 : CCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGA : 274963 215 : leThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisThrCysGlyGlnIl : 233 !.!!!.!||||||! !.!!|||||||||:!!||||||.!!|||.!!! !||||||:! erAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLe 274964 : GCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTT : 275020 234 : eAspIleIleIleSerArgLeuAsnAspLeuValArgGlyGluTyrMetLysGluThr : 252 :..!:!::!:!!:! ! !!:!!!.!!!:!!!|||!.! !... :::... uSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsnLys 275021 : GAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaa : 275077 253 : LeuAsnLeuAsnThrArgLeuIleGluIleValGluArgHisLeuArgIleLeuArg : 271 ::!..!:!! !! !:!!||||||!.!|||||||||:!!|||||| AsnValTyrPheSerGluIleGlyValValValGluHisHisLeuArgValLeuArg 275078 : aatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTCAGG : 275136 vulgar: gi|815911908|ref|XP_012241395.1| 23 271 . KQ414889.1 274383 275136 + 316 M 24 72 G 0 6 M 122 366 G 0 3 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274384 275136 316 + . gene_id 12 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274384 275136 . + . KQ414889.1 exonerate:protein2genome:local exon 274384 275136 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274384 275136 316 + . alignment_id 12 ; Query gi|815911908|ref|XP_012241395.1| ; Align 274384 24 72 ; Align 274462 48 366 ; Align 274831 170 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 307 Query range: 23 -> 271 Target range: 262849 -> 263602 24 : TyrValThrLysHisSerLysTrpIleLeuGlnSerIleGlyIleTrpPro<-><->A : 41 ||| ! !:!! !:!::!|||:!:|||:!! !!|||||| !|||||| | TyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerA 262850 : TACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCG : 262907 42 : laAlaValGlyAspValLysLysLeuLeuProLysIleAlaIleAlaLeuSerAsnPh : 60 ||:!!:!!..! :!!:!!::!:!!:!! ! :!! !|||!.!:!!!!! !!! laSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCy 262908 : CCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTG : 262964 61 : eValLeuLeuPheAlaIleIleProCysIleLeuHisIleIlePheGluGluLysAsp : 79 !:!!:!!|||! !.!!:!!||||||! !||||||||||||:!!.!.|||! :!!:!! sLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsn 262965 : TCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAAT : 263021 80 : ThrIleMetArgLeuLysLeuSerGlyLeuLeuSerPheCysCysThrSerLeuMetL : 99 ! !|||!:!|||:!!:!! !|||! !|||.!! !! ! !..!.!!:!!!!:! PheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleA 263022 : TTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCA : 263081 100 : ysTyrTrpAlaLeuThrLeuArgLysProArgIleLysGlyCysIleGluGlnValCy : 118 !.||| !||| !|||!.!!.. ! !|||:!!||||||:!::!!!!.||| snTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGl 263082 : ATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCA : 263138 119 : sIleAspTrpGluGlnValGluLeuHisLysAspArgGluIleMetLeuLysTyrGly : 137 !|||||| ||| ! :!!|||!:!...|||||||||||| !!!.! nGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAla 263139 : GGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCG : 263195 138 : ArgMetGlyArgAsnLeuThrIleIleCysAlaValPheMetTyrThrGlyGlyThrI : 157 !:! |||||| !!:!!.!! ! !||||||:!!|||||| ! |||.!! !! ! LysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetC 263196 : AAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGT : 263255 158 : leTyrHisSerIleLeuGlnTyrAlaIleGlyThrPheValAsp<->GluHisAsnAr : 175 ! ! ! !:!! ! !!:!.!!! ! !..!.!!! !||| .!..!.!.!|| ysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrAr 263256 : GCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAG : 263312 176 : gThrIleLysProLeuValTyrProThrTyrSerAlaLeuTyrAspValGlnSerSer : 194 |! !:!!::: !||| !! !|||..!|||!.!! !:!! ! |||.!.!!!!:! gIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThrAsn 263313 : AATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAAT : 263369 195 : ProIleTyrAspLeuValTyrValIleHisCysMetCysGlyTyrValMetTyrSerI : 214 |||! !!!!::!! !! !!.!! !!.! !:!!! |||!:!:!!:!: !:!!! ProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaT 263370 : CCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGA : 263429 215 : leThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisThrCysGlyGlnIl : 233 !|||!.!||||||! !|||:!!.!!|||:!!|||||| !|||.!!|||||||||:! hrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLe 263430 : CAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTT : 263486 234 : eAspIleIleIleSerArgLeuAsnAspLeuValArgGlyGluTyrMetLysGluThr : 252 ::!!:!::!:!!:||| !!:!!!..!!:!!!|||!.! !... :!!.!.! ! uAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLys 263487 : GAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAG : 263543 253 : LeuAsnLeuAsnThrArgLeuIleGluIleValGluArgHisLeuArgIleLeuArg : 271 ! !! ! !|||..!:!! !! !|||||||||!.!|||||||||:!!|||||| AsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeuArg 263544 : AATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTGAGG : 263602 vulgar: gi|815911908|ref|XP_012241395.1| 23 271 . KQ414889.1 262849 263602 + 307 M 17 51 G 0 6 M 131 393 G 0 3 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262850 263602 307 + . gene_id 13 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262850 263602 . + . KQ414889.1 exonerate:protein2genome:local exon 262850 263602 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262850 263602 307 + . alignment_id 13 ; Query gi|815911908|ref|XP_012241395.1| ; Align 262850 24 51 ; Align 262907 41 393 ; Align 263303 172 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 277 Query range: 23 -> 286 Target range: 236852 -> 237644 24 : TyrValThrLysHisSerLysTrpIleLeuGlnSerIleGlyIleTrpProAlaAlaV : 43 ||| ! !:!! !:!::!||| :!!:!!|||||||||! !|||||| ! ! TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheS 236853 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCT : 236910 44 : alGlyAspValLysLysLeuLeuProLysIleAlaIleAlaLeuSerAsnPheValLe : 62 !..!:!!:!!:!!!:! !:!! !!::!||| !! !!.!:!!!!! !! !!.!:! erSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIl 236911 : CGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAAT : 236967 63 : uLeuPheAlaIleIleProCysIleLeuHisIleIlePheGluGluLysAspThrIle : 81 !||||||:!!|||||||||||| ||||||:!!!!:.!.|||:!! ! ! ! ! eLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyr 236968 : ACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTAC : 237024 82 : MetArgLeuLysLeuSerGlyLeuLeuSerPheCysCysThrSerLeuMetLysTyrT : 101 ! !!:!:!!|||:!! !|||! !|||||| !!! !!!!:!!!!:!..||| ThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrT 237025 : ACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACA : 237084 102 : rpAlaLeuThrLeuArgLysProArgIleLysGlyCysIleGluGlnValCysIleAs : 120 !||| !||||||::: !! !|||::: !! !.!!.!.!!.:!! ! !|| hrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAs 237085 : CCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGA : 237141 121 : pTrpGluGlnValGluLeuHisLysAspArgGluIleMetLeuLysTyrGlyArgMet : 139 ||||..! !..! ::: :::|||:::||||||||||||!.!!:!.!. pTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPhe 237142 : TTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTT : 237198 140 : GlyArgAsnLeuThrIleIleCysAlaValPheMetTyrThrGlyGlyThrIleTyrH : 159 .!!||| !! !.!!||| !|||.!!:!!|||!!::!! !||| ! ! !||| SerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrC 237199 : AGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATT : 237258 160 : isSerIleLeuGlnTyrAlaIleGlyThrPheValAspGluHisAsnArgThrIle<- : 178 ! !!!: ! !! !.!!! !..! !!|||! !! !:!!!!.! !|||||| ysValMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLe 237259 : GTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTT : 237315 179 : >LysProLeuValTyrProThrTyrSerAlaLeuTyrAspValGlnSerSerProIle : 196 ::: !||| !! |||! !|||!.!!.!||| ! |||.!.!!!!:! !!!!: uArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMet 237316 : GCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATG : 237372 197 : TyrAspLeuValTyrValIleHisCysMetCysGlyTyrValMetTyrSerIleThrA : 216 !!|||:!!||| !:!! !!!.! !:!:! !|||!:!:!! ! !!!:!! !.!! AsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaI 237373 : AACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGA : 237432 217 : laGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisThrCysGlyGlnIleAspIl : 235 !.!!!.! .!!|||.!!::! !.!..!!:!!|||.!!! !||||||:!:..!:! leSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerVa 237433 : TCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGT : 237489 236 : eIleIleSerArgLeuAsnAspLeuValArgGlyGluTyrMetLysGluThrLeuAsn : 254 ::!!!!:! ! !:!!.!.|||!!!|||!!!! !! ! !:!! !! ! !:!! lValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAsp 237490 : GGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGAT : 237546 255 : LeuAsnThrArgLeuIleGluIleValGluArgHisLeuArgIleLeuArgPheSerA : 274 ! ! ! !..!:!! !|||||||||..!|||||||||:!:|||!:!! !. HisPheAspGluIleProThrIleValGluGluHisLeuArgValLeuLys***ValC 237547 : CATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAGTAT : 237606 275 : laAlaValGluMetValLeuGlnGluValCysPheLeu : 286 .! !:!!!!::!!:!!|||! ! !! ! |||||| ysLeuLeuAspLeuIleLeuLeuMetGlyValPheLeu 237607 : GTTTGTTGGATTTGATTTTGCTGATGGGTGTGTTTCTC : 237644 vulgar: gi|815911908|ref|XP_012241395.1| 23 286 . KQ414889.1 236852 237644 + 277 M 154 462 G 0 3 M 109 327 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236853 237644 277 + . gene_id 14 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236853 237644 . + . KQ414889.1 exonerate:protein2genome:local exon 236853 237644 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 236853 237644 277 + . alignment_id 14 ; Query gi|815911908|ref|XP_012241395.1| ; Align 236853 24 462 ; Align 237318 178 327 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 275 Query range: 271 -> 394 Target range: 228076 -> 230406 272 : PheSerAlaAlaValGluMetValLeuGlnGluValCysPheLeuGluPheIleGlyS : 291 ||| !||| !:!!|||! ..!:!!|||:!!:!!..!|||:!!||||||:!!|||! PheLeuAlaLeuIleGluLysThrMetGlnGlnIleAlaPheValGluPheLeuGlyC 228077 : TTTCTGGCCCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGT : 228134 292 : erThrPheMetIleCysLeuLeuGluTyrTyrCysIleThr >>>> Target Int : 305 !!|||.!.!!::!:||||||:!!||||||||| !|||||| 72 bp ysThrIleIleLeuCysLeuIleGluTyrTyrIleIleThr++ 228135 : GTACAATAATTCTGTGCCTCATCGAGTATTACATCATAACGgt............... : 228178 306 : ron 1 >>>> AspTrpGluGlnSerAsnThrIleSerLeuThrThrTyrThrMetL : 320 !!:|||.!.! !!.!.!. !! !! ! !..!||||||:!! !| ++GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaL 228179 : ..........agGAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGT : 228293 321 : euLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuIl : 339 |||||:!!|||!!!||||||||||||||||||...|||||||||||||||:!!:!! euLeuLeuSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAl 228294 : TACTTTTATCCTTTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGC : 228350 340 : eGluLys >>>> Target Intron 2 >>>> SerSerAsnValGlyLeuSerC : 349 !||| ! 1889 bp !!!!!!!!.|||||| !!.!! aGluHis++ ++CysArgLysValGlyGluLysS 228351 : CGAACACgt.........................agTGCAGAAAAGTCGGCGAAAAGT : 230269 350 : ysPheMetIleAspTrpPheHisLeuProThrLysThrIleHisGlyLeuIleLeuIl : 368 !:!||||||!!:|||!:!!..||| !! !!!.! !! ! ! !!! !|||||||| erTyrMetIleGluTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIl 230270 : CGTACATGATCGAATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGAT : 230326 369 : eIleAlaMetSerAsnAsnProValLysIleThrAlaGlyArgIleAlaAspLeuSer : 387 |||||||||||||||| ! !!..!|||.!!|||||||||!.!!!:!.!!!:|||||| eIleAlaMetSerAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSer 230327 : CATCGCCATGTCCAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCC : 230383 388 : LeuSerThrPheGlySerVal : 394 :!!!:!||||||.!!..!||| ValAsnThrPheSerAspVal 230384 : GTAAACACTTTCAGCGACGTA : 230406 vulgar: gi|815911908|ref|XP_012241395.1| 271 394 . KQ414889.1 228076 230406 + 275 M 33 99 5 0 2 I 0 68 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228077 230406 275 + . gene_id 15 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 228077 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228077 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230406 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230406 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228077 230406 275 + . alignment_id 15 ; Query gi|815911908|ref|XP_012241395.1| ; Align 228077 272 99 ; Align 228248 305 111 ; Align 230248 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 230 Query range: 304 -> 394 Target range: 224323 -> 224658 305 : AspTrpGluGlnSerAsnThrIleSerLeuThrThrTyrThrMetLeuLeuIleSerL : 324 :::|||......|||:!! !! !||| !..!|||||| !!!:||||||!!:|||| GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 325 : euThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuIleGluLys >>> : 342 ||||||||||||||||||||...||||||||||||||||||:!! !|||::: euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln++ 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggt... : 224437 343 : > Target Intron 1 >>>> SerSerAsnValGlyLeuSerCysPheMetIleA : 353 65 bp ......:::||| ! !! !:!||||||| ++CysGluLysIleGlyGlnValSerTyrMetIleA 224438 : ......................agtgtgaaaaaattggacaAGTGTCGTACATGATCG : 224533 354 : spTrpPheHisLeuProThrLysThrIleHisGlyLeuIleLeuIleIleAlaMetSe : 372 |||||!:!!..||| !! !!!.! !! !! !!! !|||||||||||||||||||| spTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 224534 : ACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGATGTC : 224590 373 : rAsnAsnProValLysIleThrAlaGlyArgIleAlaAspLeuSerLeuSerThrPhe : 391 ||||::! !!:!!|||:!:|||||||||!.!!!:!.!!!:|||!!!|||!!!|||||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThrPhe 224591 : CAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACTTTC : 224647 392 : GlySerVal : 394 |||..!||| GlyAspVal 224648 : GGTGACGTA : 224658 vulgar: gi|815911908|ref|XP_012241395.1| 304 394 . KQ414889.1 224323 224658 + 230 M 37 111 5 0 2 I 0 61 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224658 230 + . gene_id 16 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224658 230 + . alignment_id 16 ; Query gi|815911908|ref|XP_012241395.1| ; Align 224324 305 111 ; Align 224500 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 223 Query range: 304 -> 394 Target range: 206050 -> 206401 305 : AspTrpGluGlnSerAsnThrIleSerLeuThrThrTyrThrMetLeuLeuIleSerL : 324 !!:||||||.!.!:!||||||! !:!!:!!! !..!|||! !! !|||! !||||||! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 325 : euThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuIleGluLys >>> : 342 !|||||| !:!!|||||||||||||||||||||:!!|||||||||!!::!! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 343 : > Target Intron 1 >>>> SerSerAsnValGlyLeuSerCysPheMetIleA : 353 81 bp !:! ! !|||||||||!!!! !! !! !:!:: ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 354 : spTrpPheHisLeuProThrLysThrIleHisGlyLeuIleLeuIleIleAlaMetSe : 372 !!|||!:!!.!||||||!.!!:! ! !.!..!:!!|||||||||||||||||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 373 : rAsnAsnProValLysIleThrAlaGlyArgIleAlaAspLeuSerLeuSerThrPhe : 391 |||| !!|||:!!|||:!!|||||||||!:!!!: !!!::!!||||||:!!!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 392 : GlySerVal : 394 !..!||| ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: gi|815911908|ref|XP_012241395.1| 304 394 . KQ414889.1 206050 206401 + 223 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 223 + . gene_id 17 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 223 + . alignment_id 17 ; Query gi|815911908|ref|XP_012241395.1| ; Align 206051 305 111 ; Align 206243 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 221 Query range: 296 -> 394 Target range: 214605 -> 215022 297 : LeuLeuGluTyrTyrCysIleThrAspTrpGluGlnSerAsnThrIleSerLeuThrT : 316 :::::::::::: ::: :!:|||.!...!!:!||| !! !!!! !..!| IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 317 : hrTyrThrMetLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGl : 335 |||||..!:!!|||! !|||||||||||||||||||||||||||...||||||||||| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 336 : yGluLeuLeuIleGluLys >>>> Target Intron 1 >>>> SerSerAsnV : 345 |||||||:!! !|||:!! 123 bp !!!!.!!!.| yGluLeuValSerGluGln++ ++CysLysLysV 214721 : CGAGCTTGTGTCTGAACAGgt.........................agTGCAAAAAGG : 214873 346 : alGlyLeuSerCysPheMetIleAspTrpPheHisLeuProThrLysThrIleHisGl : 364 ||||| ! !! !:!||||||!!:|||!:!!..|||||| !!!.! !! ! ! ! alGlyGluValSerTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCy 214874 : TCGGAGAAGTATCGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTG : 214930 365 : yLeuIleLeuIleIleAlaMetSerAsnAsnProValLysIleThrAlaGlyArgIle : 383 !! !|||||||||!!:||||||||||||::: !!||||||.!!|||||||||!.!!!: sCysIleLeuIleMetAlaMetSerAsnSerSerValLysPheThrAlaGlyAsnMet 214931 : TTGCATTTTGATCATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATG : 214987 384 : AlaAspLeuSerLeuSerThrPheGlySerVal : 394 !.!!!:||||||:!!|||||||||.!!|||||| ValGluLeuSerIleSerThrPheSerSerVal 214988 : GTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215022 vulgar: gi|815911908|ref|XP_012241395.1| 296 394 . KQ414889.1 214605 215022 + 221 M 45 135 5 0 2 I 0 119 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 215022 221 + . gene_id 18 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 215022 221 + . alignment_id 18 ; Query gi|815911908|ref|XP_012241395.1| ; Align 214606 297 135 ; Align 214864 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 211 Query range: 300 -> 394 Target range: 210651 -> 211932 301 : TyrCysIleThrAspTrpGluGlnSerAsnThrIleSerLeuThrThrTyrThrMetL : 320 !:! !:!! !!!:|||!!:...!.!:!! !!|||||| ! !||||||! !:!:| PheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValL 210652 : TTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTAC : 210709 321 : euLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuIl : 339 |||||! !|||:!!||||||||||||||||||!!!|||||||||||||||:!!||| euLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAl 210710 : TCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGC : 210766 340 : eGluLys >>>> Target Intron 1 >>>> SerSerAsnValGlyLeuSerC : 349 !|||:!: 999 bp !!! !!!.|||||| !!.!! aGluGln++ ++ThrValLysValGlyGluLysS 210767 : TGAACAggt.........................agACAGTAAAAGTTGGAGAAAAGT : 211795 350 : ysPheMetIleAspTrpPheHisLeuProThrLysThrIleHisGlyLeuIleLeuIl : 368 !!:!||||||||||||!:!!..:!!||| !|||! ! ! ! !:!! !|||!! erTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValValProLeuMe 211796 : CTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGAT : 211852 369 : eIleAlaMetSerAsnAsnProValLysIleThrAlaGlyArgIleAlaAspLeuSer : 387 :|||:!!||||||:!!::: !!..!|||||||||||||||!.!:!! !! !|||||| tIleSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleValLeuSer 211853 : GATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTTCTTTCA : 211909 388 : LeuSerThrPheGlySerVal : 394 :!!|||!:!||||||..!||| IleSerSerPheGlyAspVal 211910 : ATCAGTAGTTTCGGTGACGTA : 211932 vulgar: gi|815911908|ref|XP_012241395.1| 300 394 . KQ414889.1 210651 211932 + 211 M 41 123 5 0 2 I 0 995 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210652 211932 211 + . gene_id 19 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 210652 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210652 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211932 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211932 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210652 211932 211 + . alignment_id 19 ; Query gi|815911908|ref|XP_012241395.1| ; Align 210652 301 123 ; Align 211774 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 210 Query range: 304 -> 394 Target range: 277371 -> 277713 305 : AspTrpGluGlnSerAsnThrIleSerLeuThrThrTyrThrMetLeuLeuIleSerL : 324 !!:|||....!.|||:!!..! !!!:!!||||||:!! !|||:!!|||||||||: GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 325 : euThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuIleGluLys >>> : 342 !: |||||||||||| !:!!|||||||||||||||:!!|||! !|||:!! etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 343 : > Target Intron 1 >>>> SerSerAsnValGlyLeuSerCysPheMetIleA : 353 72 bp !!!!.!!!.|||||| ! ! !!:!|||! : ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 354 : spTrpPheHisLeuProThrLysThrIleHisGlyLeuIleLeuIleIleAlaMetSe : 372 !!|||!:!:!!|||||| !||| !|||! !..!|||:!!|||||||||:!!! || snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 373 : rAsnAsnProValLysIleThrAlaGlyArgIleAlaAspLeuSerLeuSerThrPhe : 391 |!:! :::|||||||||||||||:::::: ...:::|||:!!! !|||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 392 : GlySerVal : 394 |||..!||| GlyAspVal 277703 : GGCGATGTA : 277713 vulgar: gi|815911908|ref|XP_012241395.1| 304 394 . KQ414889.1 277371 277713 + 210 M 37 111 5 0 2 I 0 68 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277713 210 + . gene_id 20 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277713 210 + . alignment_id 20 ; Query gi|815911908|ref|XP_012241395.1| ; Align 277372 305 111 ; Align 277555 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 203 Query range: 304 -> 394 Target range: 219328 -> 219671 305 : AspTrpGluGlnSerAsnThrIleSerLeuThrThrTyrThrMetLeuLeuIleSerL : 324 !!:|||:!!..!!:!:!!..!! ||| !..!||||||! !!!:||||||||||||| GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 325 : euThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuIleGluLys >>> : 342 ||||||||||||||||||||...|||||||||||||||:!!:!! !|||:!: euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln++ 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAggt... : 219442 343 : > Target Intron 1 >>>> SerSerAsnValGlyLeuSerCysPheMetIleA : 353 73 bp !! ...:::||| !:!||||||! ++CysArgLysIleGlyGluMetSerTyrMetIleG 219443 : ......................agTGtaggaaaattggagaaatgtCGTACATGATCG : 219546 354 : spTrpPheHisLeuProThrLysThrIleHisGlyLeuIleLeuIleIleAlaMetSe : 372 !:|||!:!!..||| !! !|||! !! ! ! !! !:!!|||! !||||||||||| luTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaMetSe 219547 : AATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTATGTC : 219603 373 : rAsnAsnProValLysIleThrAlaGlyArgIleAlaAspLeuSerLeuSerThrPhe : 391 ||||::! !!:!!|||:!:|||||||||!.!!!:!.!!!:||||||:!!||||||||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPhe 219604 : GAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCACTTTT : 219660 392 : GlySerVal : 394 !..!||| ThrAspVal 219661 : ACCGACGTG : 219671 vulgar: gi|815911908|ref|XP_012241395.1| 304 394 . KQ414889.1 219328 219671 + 203 M 37 111 5 0 2 I 0 69 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219671 203 + . gene_id 21 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219671 203 + . alignment_id 21 ; Query gi|815911908|ref|XP_012241395.1| ; Align 219329 305 111 ; Align 219513 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 197 Query range: 304 -> 394 Target range: 272836 -> 273176 305 : AspTrpGluGlnSerAsnThrIleSerLeuThrThrTyrThrMetLeuLeuIleSerL : 324 :!:||| .!. !:!! ! ||||||||||||||| !|||:!!|||||||||: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 325 : euThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuIleGluLysSer{S : 343 !:||||||||||||||||||::!|||||||||||||||:!!|||! |||!:! !{! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArgVal{I 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGGTA{A : 272951 344 : e} >>>> Target Intron 1 >>>> {r}AsnValGlyLeuSerCysPheMet : 351 } 70 bp {!}...:::||| ! ! !!:!||| l}+- +-{e}LysIleGlyGluValValTyrMet 272952 : T}gc.........................aa{a}aaaattggcGAGGTAGTTTACATG : 273045 352 : IleAspTrpPheHisLeuProThrLysThrIleHisGlyLeuIleLeuIleIleAlaM : 371 ! :!!|||!:!:!!|||||| !||| !|||! !! !|||||||||||||||:!!! ThrAsnTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerA 273046 : ACGAACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAA : 273105 372 : etSerAsnAsnProValLysIleThrAlaGlyArgIleAlaAspLeuSerLeuSerTh : 390 !!!!:! ! !:!!|||||||||||||||||||||!.! !:!!|||:!!! !|| rgCysSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrTh 273106 : GATGCAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACAC : 273162 391 : rPheGlySerVal : 394 |||||||..!||| rPheGlyAspVal 273163 : GTTCGGCGATGTA : 273176 vulgar: gi|815911908|ref|XP_012241395.1| 304 394 . KQ414889.1 272836 273176 + 197 M 38 114 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273176 197 + . gene_id 22 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272952 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272952 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272953 272954 . + . intron_id 1 ; splice_site "gc" KQ414889.1 exonerate:protein2genome:local intron 272953 273022 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273021 273022 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 273023 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 273023 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273176 197 + . alignment_id 22 ; Query gi|815911908|ref|XP_012241395.1| ; Align 272837 305 114 ; Align 273024 344 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 186 Query range: 301 -> 399 Target range: 244432 -> 244832 302 : CysIleThrAspTrpGluGlnSerAsnThrIleSerLeuThrThrTyrThrMetLeuL : 321 |||... !!!:|||! !:!!|||:!!.!!! !! !|||! !|||||| !!!: !| CysPhe***GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheIleAlaL 244433 : tgtttctaGGAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTATAGCAC : 244490 322 : euIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuIleGl : 340 ||:!!:!!:!!..!! !|||! !||||||||||||||||||.!!!!: !|||! !|| euValAlaIleValSerAsnThrPheIleLeuCysTyrIleSerAspArgLeuThrGl 244491 : TCGTTGCTATTGTTTCTAATACATTTATACTCTGTTATATCAGCGACAGGCTGACAGA : 244547 341 : uLys >>>> Target Intron 1 >>>> SerSerAsnValGlyLeuSerCysP : 350 |:!! 106 bp !!!! !!!.|||||| ! ! !! uGln++ ++CysLeuLysValGlyGluValValT 244548 : ACAGgt.........................agTGCTTGAAAGTTGGTGAAGTGGTTT : 244683 351 : heMetIleAspTrpPheHisLeuProThrLysThrIleHisGlyLeuIleLeuIleIl : 369 :!|||! !||||||!:!:!!|||||| !!:!! !|||! !! !|||||||||||||| yrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIl 244684 : ACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCAT : 244740 370 : eAlaMetSerAsnAsnProValLysIleThrAlaGlyArgIleAlaAspLeuSerLeu : 388 | ! ||||||! !|||:!!||||||||||||!:!:!! ! !!:!!|||||| eLysArgSerAsnMetValValGluIleThrAlaGlyLysValLeuHisMetSerLeu 244741 : TAAACGATCGAACATGGTCGTTGAAATCACCGCTGGAAAAGTATTACATATGTCGCTT : 244797 389 : SerThrPheGlySerValLeuLysSerSerLeu : 399 ! !|||||||||..!||| !:!!!!!!.!||| TyrThrPheGlyAspValSerGluThrLysLeu 244798 : TACACGTTCGGCGATGTAAGTGAAACTAAACTT : 244832 vulgar: gi|815911908|ref|XP_012241395.1| 301 399 . KQ414889.1 244432 244832 + 186 M 40 120 5 0 2 I 0 102 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244433 244832 186 + . gene_id 23 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244433 244552 . + . KQ414889.1 exonerate:protein2genome:local exon 244433 244552 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244553 244554 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244553 244658 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244657 244658 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244659 244832 . + . KQ414889.1 exonerate:protein2genome:local exon 244659 244832 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244433 244832 186 + . alignment_id 23 ; Query gi|815911908|ref|XP_012241395.1| ; Align 244433 302 120 ; Align 244659 342 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 169 Query range: 301 -> 399 Target range: 254062 -> 254448 302 : CysIleThrAspTrpGluGlnSerAsnThrIleSerLeuThrThrTyrThrMetLeuL : 321 |||.!! !!!:||| !:!!|||:!!.!! !! !||| !||||||! !:!: !| CysPhe***GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrL 254063 : tgctTCTAGGAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACAC : 254120 322 : euIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuIleGl : 340 ||:!!:!!:!!..! ||| |||::::::|||||||||.!!!!: !|||! !|| euValAlaValValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGl 254121 : TCGTTGCTGTTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGA : 254177 341 : uLysSerSerAsn{V} >>>> Target Intron 1 >>>> {al}GlyLeuSer : 348 |:!! !..!.!.{:} 92 bp {!!}||| ! ! uGlnValGlnGlu{I}-+ ++{le}GlyGluVal 254178 : ACAGGTACAAGAG{A}ct.........................ag{TT}GGTGAAGTG : 254293 349 : CysPheMetIleAspTrpPheHisLeuProThrLysThrIleHisGlyLeuIleLeuI : 368 !!:!|||! !||||||!:!:!!|||||| !!:!! !|||! !! !|||||||||| ValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuI 254294 : GTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGA : 254353 369 : leIleAlaMetSerAsnAsnProValLysIleThrAlaGlyArgIleAlaAspLeuSe : 387 |||||.!! |||||| !|||:!!||||||||||||:::||| :::|| leIleThrArgSerAsnValValValGluIleThrAlaGlyLysIlePheHisMetSe 254354 : TCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTC : 254410 388 : rLeuSerThrPheGlySerValLeuLysSerSerLeu : 399 ||||! !|||||||||..!||| !:!!!!!!:!||| rLeuTyrThrPheGlyAspValSerGluThrAsnLeu 254411 : GCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTT : 254448 vulgar: gi|815911908|ref|XP_012241395.1| 301 399 . KQ414889.1 254062 254448 + 169 M 43 129 S 0 1 5 0 2 I 0 88 3 0 2 S 1 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254063 254448 169 + . gene_id 24 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254063 254192 . + . KQ414889.1 exonerate:protein2genome:local exon 254063 254192 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254193 254194 . + . intron_id 1 ; splice_site "CT" KQ414889.1 exonerate:protein2genome:local intron 254193 254284 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254283 254284 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254285 254448 . + . KQ414889.1 exonerate:protein2genome:local exon 254285 254448 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254063 254448 169 + . alignment_id 24 ; Query gi|815911908|ref|XP_012241395.1| ; Align 254063 302 129 ; Align 254287 346 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 343 -> 400 Target range: 238634 -> 238805 344 : AsnValGlyLeuSerCysPheMetIleAspTrpPheHisLeuProThrLysThrIleH : 363 !!.|||||| ! ! !!:!|||! !||||||!:!:!!|||||| !!:!! !|||! LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 238635 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 238692 364 : isGlyLeuIleLeuIleIleAlaMetSerAsnAsnProValLysIleThrAlaGlyAr : 382 !! !||||||||||||||| ! |||||| !||||||:!!|||||||||!: euAspLeuIleLeuIleIleLysArgSerAsnValValValLysValThrAlaGlyLy 238693 : TCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCACCGCTGGAAA : 238749 383 : gIleAlaAspLeuSerLeuSerThrPheGlySerValLeuLysSerSerLeuAla : 400 !:!! ! !!:!!||||||! !|||||||||..!||| !:!!!!!!:!|||||| sValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeuAla 238750 : AGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTTGCT : 238805 vulgar: gi|815911908|ref|XP_012241395.1| 343 400 . KQ414889.1 238634 238805 + 135 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238635 238805 135 + . gene_id 25 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238635 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238635 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238635 238805 135 + . alignment_id 25 ; Query gi|815911908|ref|XP_012241395.1| ; Align 238635 344 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 337 -> 402 Target range: 292380 -> 292575 338 : LeuIleGluLysSerSerAsnValGlyLeuSerCysPheMetIleAspTrpPheHisL : 357 :!!:!: ! :!!.!!|||.!.:!!!.!! !:!!! !!:! ! !!!:|||!:!:!!| ValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnL 292381 : GTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATC : 292438 358 : euProThrLysThrIleHisGlyLeuIleLeuIleIleAlaMetSerAsnAsnProVa : 376 |||||! !::!! ! !!.!! !:!!:!!|||:!::!!|||!!:!!!!!.:!!|||:! euProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIl 292439 : TGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGAT : 292495 377 : lLysIleThrAlaGlyArgIleAlaAspLeuSerLeuSerThrPheGlySerValLeu : 395 !|||:!!|||||||||!:!||| !! !|||||||||!:!|||||||||:!!|||! ! eLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArg 292496 : CAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGT : 292552 396 : LysSerSerLeuAlaTyrLeu : 402 :!!|||!.!|||!.!! :!! GluSerLysLeuValLeuIle 292553 : GAATCAAAACTAGTCTTGATA : 292575 vulgar: gi|815911908|ref|XP_012241395.1| 337 402 . KQ414889.1 292380 292575 + 128 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292381 292575 128 + . gene_id 26 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292381 292575 . + . KQ414889.1 exonerate:protein2genome:local exon 292381 292575 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292381 292575 128 + . alignment_id 26 ; Query gi|815911908|ref|XP_012241395.1| ; Align 292381 338 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 187 -> 246 Target range: 202712 -> 202889 188 : LeuTyrAspValGlnSerSerProIleTyrAspLeuValTyrValIleHisCysMetC : 207 :!! !||||||::!! !||||||:!: !!!!::!! !!!:! !|||!.. !:!:. IleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleValA 202713 : ATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAG : 202770 208 : ysGlyTyrValMetTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAl : 226 .!! ! !:!!!!::!!.!!:!!|||!.!||||||||| !!|||.!!||||||||||| laValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAl 202771 : CTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGC : 202827 227 : aThrHisThrCysGlyGlnIleAspIleIleIleSerArgLeuAsnAspLeuValArg : 245 |..!||| !|||||||||!!:|||:!!:!:!!::!! !!|||.!. !!|||:!! ! aValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMetAsp 202828 : GGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGAT : 202884 246 : Gly : 246 ||| Gly 202885 : GGT : 202889 vulgar: gi|815911908|ref|XP_012241395.1| 187 246 . KQ414889.1 202712 202889 + 126 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202713 202889 126 + . gene_id 27 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202713 202889 . + . KQ414889.1 exonerate:protein2genome:local exon 202713 202889 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202713 202889 126 + . alignment_id 27 ; Query gi|815911908|ref|XP_012241395.1| ; Align 202713 188 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 304 -> 341 Target range: 264537 -> 264648 305 : AspTrpGluGlnSerAsnThrIleSerLeuThrThrTyrThrMetLeuLeuIleSerL : 324 !!:||||||... ::: :::|||||||||||| !|||:!!|||||||||: GluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerM 264538 : GAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATACTGATATCAA : 264595 325 : euThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuIleGluLys : 341 !! ! !|||||||||:!!:!!|||||||||||||||:!!|||! !|||::: etCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGln 264596 : TGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcag : 264648 vulgar: gi|815911908|ref|XP_012241395.1| 304 341 . KQ414889.1 264537 264648 + 113 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264538 264648 113 + . gene_id 28 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264538 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264538 264648 113 + . alignment_id 28 ; Query gi|815911908|ref|XP_012241395.1| ; Align 264538 305 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 324 -> 394 Target range: 200173 -> 200452 325 : ThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuIleGluLys >>>> : 342 |||||| !|||||||||||||||! !||||||:!!|||||||||!!::!! ThrPheCysIlePheIleLeuCysCysIleGlyGlnLeuLeuIleAspGlu++ 200174 : ACCTTCTGCATTTTCATACTATGTTGCATCGGTCAACTTCTTATCGATGAAgt..... : 200227 343 : Target Intron 1 >>>> SerSerAsnValGlyLeuSerCysPheMetIleAsp : 353 68 bp !:!! ! |||||||||!!!! !! !! !:!::!! ++AsnTyrValValGlyLeuThrSerCysThrValAsn 200228 : ....................agAATTACGTGGTTGGATTAACATCTTGCACGGTGAAT : 200326 354 : TrpPheHisLeuProThrLysThrIleHisGlyLeuIle-LeuIleIleAlaMetSer : 372 |||! !!.!! !|||!.!!:! !:!:!.! !|||! !#|||||||||||||||||| TrpCysArgProProAsnArgHisValArgTyrLeuThr#LeuIleIleAlaMetSer 200327 : TGGTGTCGTCCTCCAAACAGACATGTGCGCTATCTGACCGCTGATAATTGCCATGTCT : 200384 373 : AsnAsnProValLysIleThrAlaGlyArgIleAlaAspLeuSerLeuSerThrPheG : 392 ||| !!! !:!!!:!:!!.!!::!.!!!:!:!:!.!!!::!!!:!|||:!!|||||| AsnTyrLeuIleArgLeuAlaSerSerLysValValGluIleAsnLeuAlaThrPheT 200385 : AATTACCTAATAAGATTAGCAAGTAGTAAAGTGGTCGAAATAAATTTAGCTACTTTCA : 200444 393 : lySerVal : 394 !..!||| hrAspVal 200445 : CAGATGTA : 200452 vulgar: gi|815911908|ref|XP_012241395.1| 324 394 . KQ414889.1 200173 200452 + 107 M 17 51 5 0 2 I 0 64 3 0 2 M 25 75 F 0 1 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 200174 200452 107 + . gene_id 29 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 200174 200224 . + . KQ414889.1 exonerate:protein2genome:local exon 200174 200224 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 200225 200226 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 200225 200292 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 200291 200292 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 200293 200452 . + . KQ414889.1 exonerate:protein2genome:local exon 200293 200452 . + . insertions 0 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local similarity 200174 200452 107 + . alignment_id 29 ; Query gi|815911908|ref|XP_012241395.1| ; Align 200174 325 51 ; Align 200293 342 75 ; Align 200369 367 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 297 -> 347 Target range: 297439 -> 297589 298 : LeuGluTyrTyrCysIleThrAspTrpGluGlnSerAsnThrIleSerLeuThrThrT : 317 |||:::|||::: ... |||:!! !:!!! !|||! ! !..!||| LeuLysTyrHisPhePheGlnGlyTrpLysThrHisAspMetIlePheGlyValThrI 297440 : ttaaaatatcatttttttcaggGATGGAAAACTCACGATATGATTTTTGGGGTAACGA : 297497 318 : yrThrMetLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGl : 336 ! ! !!!:!!:!!|||:!!|||||||||||||||:!!||||||:!! !||||| leGlyGlyPheMetLeuSerIleThrPheAsnIlePheValLeuCysHisAlaGlyGl 297498 : TCGGCGGTTTCATGCTTTCGATCACTTTTAATATATTCGTATTATGTCATGCAGGTGA : 297554 337 : uLeuLeuIleGluLysSerSerAsnValGlyLeu : 347 |||||||:!!|||:!! ! !!!!.||| !||| uLeuLeuValGluGluValProLysValPheLeu 297555 : ACTTCTTGTCGAGGAGGTACCGAAAGTGTTTCTA : 297589 vulgar: gi|815911908|ref|XP_012241395.1| 297 347 . KQ414889.1 297439 297589 + 101 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297440 297589 101 + . gene_id 30 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297440 297589 . + . KQ414889.1 exonerate:protein2genome:local exon 297440 297589 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297440 297589 101 + . alignment_id 30 ; Query gi|815911908|ref|XP_012241395.1| ; Align 297440 298 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 209 -> 246 Target range: 202973 -> 203084 210 : ValMetTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisT : 229 :!!!!::!!.!!:!!|||!.!||||||||| !!|||.!!||||||||||||..!||| LeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAlaValHisA 202974 : CTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTATTTGCGGTTCACG : 203031 230 : hrCysGlyGlnIleAspIleIleIleSerArgLeuAsnAspLeuValArgGly : 246 !|||||||||!!:|||:!!:!:!!::!! !!|||.!. !!|||:!! !||| spCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMetAspGly 203032 : ATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGATGGT : 203084 vulgar: gi|815911908|ref|XP_012241395.1| 209 246 . KQ414889.1 202973 203084 + 100 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202974 203084 100 + . gene_id 31 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202974 203084 . + . KQ414889.1 exonerate:protein2genome:local exon 202974 203084 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202974 203084 100 + . alignment_id 31 ; Query gi|815911908|ref|XP_012241395.1| ; Align 202974 210 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1256 Query range: 0 -> 404 Target range: 303127 -> 305816 1 : MetHisLeuSerValArgArgGlnThrAsp<->ProProGlnAsnThrLysTyrGluG : 19 ||||||||||||:!!|||..!|||! !||| !|||!:!||| !!!.|||:!!: MetHisLeuSerMetArgGluGlnIleAspArgLysProArgAsnLeuAsnTyrLysL 303128 : ATGCATCTCTCTATGCGAGAGCAGATCGATCGGAAACCGCGGAATTTGAATTACAAGA : 303185 20 : luAspIleAspTyrValThrLysHisAsnLysTrpValLeuAsnSerIleGlyMetTr : 38 !!||||||! !|||||||||||||||!:!||||||:!!|||!!.|||:!!|||!!:|| ysAspIleValTyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTr 303186 : AAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTG : 303242 39 : pProValValAlaGluGlyIleAspLysPheLeuProLysIleIleIleGlyPheSer : 57 ||||!.!||| !!!:! !! !! !|||||||||||||||! !||||||.!!||| pProAlaValLeuAspGluThrAlaGlyPheLeuProLysIleThrIleGlyLeuSer 303243 : GCCAGCCGTGTTGGACGAAACCGCAGGATTCCTACCAAAAATCACCATTGGACTCAGT : 303299 58 : AsnLeuValSerLeuPheThrValValGlnCysIleLeuHisIleIleLeuGluGluL : 77 ||||||||| !||||||||||||:!!! !||||||||||||||||||!!!|||:!!| AsnLeuValLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnL 303300 : AATTTGGTTCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAA : 303359 78 : ysAspAlaLeuLeuArgLeuArgLeuLeuGlyLeuAlaCysPheAlaSerIleAsnLe : 96 |||||.!!:!!:!!||||||!:!|||!!!|||||| ! !!|||..!! !|||:::|| ysAspThrIleIleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLe 303360 : AGGATACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTT : 303416 97 : uLeuLysTyrTrpAlaValIleValArgLysProAsnIleGluTyrCysIleLysGln : 115 |:!!||||||||||||:!! !..!|||||||||!..|||:!! ! ||||||:!!:!! uMetLysTyrTrpAlaLeuAlaThrArgLysProArgIleLysGluCysIleGluGlu 303417 : GATGAAGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAG : 303473 116 : ValGlnThrAspTrpLysGln >>>> Target Intron 1 >>>> ValGluPh : 125 ||||||!:!|||||||||:!! 938 bp ||||||! ValGlnSerAspTrpLysGlu++ ++ValGluSe 303474 : GTGCAAAGTGATTGGAAAGAGgt.........................agGTGGAATC : 304441 126 : eGlnLysAsnArgMetLeuMetLeuLysTyrGlyLysIleGlyArgAspLeuThrIle : 144 !! !:!:!!||| :!!|||||||||||||||:!!!!:||||||:!!||||||||| rLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIle 304442 : TCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATA : 304498 145 : TyrSerAlaValPheMetTyrSerAlaGlyIleCysTyrValThrIleMetGlnTyrA : 164 !!!!|||:!!|||||||||!!!!.!|||! ! !||| !|||:!!||||||!:!| IleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheA 304499 : ATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCG : 304558 165 : laMetGlyMetSerLeuLysAlaAsnAsnArgThrIleArgValLeuValTyrProTh : 183 ||! |||! !! !:!! ! ! ! !!||||||||||||!:! !|||||||||||||| laThrGlyThrTyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProTh 304559 : CGACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCAC : 304615 184 : rTyrSerGlyPhePheAspAlaGlnLysSerProIleTyrGluIleValTyrValLeu : 202 |||||||!.!!!.||||||!.!|||! !|||||||||||||||:!:|||||| !!:!! rTyrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheVal 304616 : CTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTT : 304672 203 : GlnCysMetCysThrPheValPheAsnSerValThrValGlyCysCysGlyLeuAlaA : 222 !!.||||||||| !!:!|||.!! !!|||:!!|||!.!|||..!||||||||||||| HisCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaA 304673 : CATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCG : 304732 223 : laLeuPheValThrHisAlaCysGlyGlnIleAspValValIleSerGlnLeuAsnAs : 241 ||||||||!.!||||||||||||||||||||||||:!!|||!!:|||!:!|||..!|| laLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAs 304733 : CTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGA : 304789 242 : pLeuValGluGlyLysPheAlaLysLysAsnSerAspProAsnThrArgLeuMetGlu : 260 |||||||.!. ::!|||:!!:::|||||| !:!!! !||||||!!:||| pLeuValAsn---------SerLysGluSerSerAspLeuAspLysArgLeuIleGlu 304790 : TCTTGTCAAC---------AGCAAAGAATCATCTGATTTAGATAAACGATTAATAGAA : 304837 261 : IleValLysHisHisIleArgIleLeu{Ly} >>>> Target Intron 2 >>>> : 270 ||||||:!!||||||:!:|||||||||{!:} 70 bp IleValGluHisHisLeuArgIleLeu{Ar}++ 304838 : ATTGTTGAGCATCATTTGCGAATTTTA{AG}gt......................... : 304871 271 : {s}PheSerAlaValIleGluThrValLeuGlnGluValCysPhePheGluPheVa : 288 {!}|||||||||:!!:!::!!||||||||||||||||||||||||!!.||||||:! ++{g}PheSerAlaIleValGlnThrValLeuGlnGluValCysPheLeuGluPheIl 304872 : ag{A}TTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTTCTTGGAATTCAT : 304991 289 : lGlySerThrPheValIleCysLeuLeuGluTyrTyrCysIleThr >>>> Targe : 304 !|||||||||!!.:!!|||||||||||||||||||||||||||||| eGlySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysIleThr++ 304992 : TGGTTCTACCTTACTGATATGTCTACTTGAATACTACTGTATAACGgt.......... : 305041 305 : t Intron 3 >>>> AspTrpGlnGlnAsnAsnLysIleGlyLeuThrThrTyrSe : 317 62 bp ||||||:!!...!:!|||! :!!.!!||||||||||||!! ++AspTrpGluSerSerAsnThrValSerLeuThrThrTyrTh 305042 : ...............agGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATAC : 305140 318 : rMetLeuLeuValSerLeuThrPheAsnMetPheLeuLeuCysTyrIleGlyAsnLeu : 336 !:!!||||||:!!|||:!!|||||||||!!:|||:!!|||||||||||||||.!.:!! rValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIle 305141 : AGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATT : 305197 337 : LeuIleGluLys >>>> Target Intron 4 >>>> SerThrSerValGlyIl : 346 |||!!:|||||| 413 bp |||!:!|||||||||:! LeuMetGluLys++ ++SerSerSerValGlyLe 305198 : CTTATGGAAAAGgt.........................agAGCAGTAGCGTTGGATT : 305640 347 : eSerCysTyrMetIleAspTrpTyrArgLeuProValLysThrValGlnAspLeuIle : 365 !||||||!:!||||||..!||||||!.!||||||..!||||||:!!!!.! !|||||| uSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIle 305641 : ATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATT : 305697 366 : LeuIleIleAlaMetSerAsnSerProAlaLysIleSerAlaGlyArgIlePheLeuL : 385 ||||||||||||||||||!:!!:!|||||||||||||||||||||!:!:!! !! !| LeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysValValAspL 305698 : TTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATT : 305757 386 : euSerLeuThrThrPheGlyAsnValLeuLysThrSerPheAlaTyrLeuAsnPheVa : 404 ||||||||:!!||||||||||||||| ! ! !...:::::: ::::::...|| euSerLeuSerThrPheGlyAsnValSerTyrTyrGlnTyrSerAsnIleSerIleVa 305758 : TATCTTTATCCACATTTGGAAACGTGAGTTACTATcaatattccaatatttcaattgt : 305814 405 : l : 404 | l 305815 : t : 305816 vulgar: gi|815911896|ref|XP_012241389.1| 0 404 . KQ414889.1 303127 305816 + 1256 M 10 30 G 0 3 M 112 336 5 0 2 I 0 934 3 0 2 M 122 366 G 3 0 M 22 66 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 37 111 5 0 2 I 0 409 3 0 2 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303128 305816 1256 + . gene_id 1 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303128 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303128 303496 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304868 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 2 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305816 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305816 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303128 305816 1256 + . alignment_id 1 ; Query gi|815911896|ref|XP_012241389.1| ; Align 303128 1 30 ; Align 303161 11 336 ; Align 304435 123 366 ; Align 304801 248 66 ; Align 304940 271 99 ; Align 305101 304 111 ; Align 305625 341 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 584 Query range: 18 -> 409 Target range: 232447 -> 235266 19 : GluAspIleAspTyrValThrLysHisAsnLysTrpValLeuAsnSerIleGlyMetT : 38 ..!||| !!!:||| !! !:!! |||:::||| !!|||!.. !!!!:||| | ArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaT 232448 : CGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCAT : 232505 39 : rpProValValAlaGlu<-><->GlyIleAspLysPheLeuProLysIleIleIleGl : 55 ||||| !|||.!!||| !! !.!.:!!.!.||| !!|||:!::!:! ! rpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLe 232506 : GGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACT : 232562 56 : yPheSerAsnLeuValSerLeuPheThrValValGlnCysIleLeuHisIleIleLeu : 74 ! !!!!:!!! !:!!! !:!!! !:!!:!!|||! !||||||||| !|||:!:!!! uThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPhe 232563 : CACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTC : 232619 75 : GluGluLysAspAlaLeuLeuArgLeuArgLeuLeuGlyLeuAlaCysPheAlaSerI : 94 |||!!:! !..! ! ! !|||:!!!:!! !:!!|||! ! ! !! ! ! !! GluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuM 232620 : GAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGA : 232679 95 : leAsnLeuLeuLysTyrTrpAlaValIleValArgLysProAsnIleGluTyrCysIl : 113 !:..! !|||!!.|||!! ..!:!!:!:!.!!:! ! !:!!||| ||||||:! etGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysVa 232680 : TGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGT : 232736 114 : eLysGlnValGlnThrAspTrpLysGlnValGluPheGlnLysAsnArgMetLeuMet : 132 ::!!||||||:!! !||||||::!.!.|||:!! ! :!!||| |||||| lGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMet 232737 : GGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATG : 232793 133 : LeuLysTyrGlyLysIleGlyArgAspLeuThrIleTyrSerAlaValPheMetTyrS : 152 |||||| !!!.!|||:!!||||||...:!!.!! ! !:!!||| !!! !|||:!!! LeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisT 232794 : TTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACA : 232853 153 : erAlaGlyIleCysTyrValThrIleMetGlnTyrAlaMetGlyMetSerLeuLysAl : 171 !!!.!! ! !! ! !!! !! !:!!! ! ! !|||.!!! !! !! ! !!. hrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGl 232854 : CCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGG : 232910 172 : aAsn<->AsnArgThrIleArgValLeuValTyrProThrTyrSerGlyPhePheAsp : 189 !||| !:! !:!!!!: ! !||| !! ! !! !|||!!! !.!..!.||| yAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAsp 232911 : GAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGAC : 232967 190 : AlaGlnLysSerProIleTyrGluIleValTyrValLeuGlnCysMetCysThrPheV : 209 .!!::! ||||||! !!||||||:!!!:!||||||||||||:!:! ! !|||: ThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheI 232968 : ACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCA : 233027 210 : alPheAsnSerValThrValGlyCysCysGlyLeuAlaAlaLeuPheValThrHisAl : 228 !! ! ||||||||||||||||||..!|||||||||!.!|||:!!.!.!.!! !||||| leValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAl 233028 : TCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGC : 233084 229 : aCysGlyGlnIleAspValValIleSerGlnLeuAsnAspLeuValGluGlyLysPhe : 247 ||||||||||:!::!!||||||!!:|||:!!|||:!!|||||||||!!:!.!||| aCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLys--- 233085 : GTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAA--- : 233141 248 : AlaLysLysAsnSerAspProAsnThrArgLeuMetGluIleValLysHisHisIleA : 267 !.!:!!:!!.!.!!!! ! !!.!.! !!:!||| ||||||:!!||||||:!:| GlyGlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuA 233142 : GGGCAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGC : 233198 268 : rgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheSerAlaValIl : 275 ||! !|||{!.} 1315 bp {.}|||! ! ! !|| rgThrLeu{Se}++ ++{r}PheIleArgAsnIl 233199 : GTACATTA{AG}gt.........................ag{T}TTTATACGGAATAT : 234537 276 : eGluThrValLeuGlnGluValCysPhePheGluPheValGlySerThrPheValIle : 294 ||||!.!|||:!!.!. !:!!|||.!. !!|||!!.||||||!!!|||!!. !!!: eGluAsnValMetAsnLeuIleCysLeuValGluLeuValGlyCysThrLeuAsnMet 234538 : AGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACGTTGAACATG : 234594 295 : CysLeuLeuGluTyrTyrCysIleThr >>>> Target Intron 2 >>>> As : 304 |||:!!||||||||||||! :!!||| 189 bp CysMetLeuGluTyrTyrLeuLeuThr++ ++-- 234595 : TGCATGCTCGAGTATTATTTACTCACGgt.........................ag-- : 234813 305 : pTrpGlnGlnAsnAsnLysIleGlyLeuThrThrTyrSerMetLeuLeuValSerLeu : 323 :!!!!.:::||| |||.!!:!!||| !!!::!!! !||||||:!! -------GluLysSerLysGluLysLeuAlaSerTyrValIleValTyrValSerMet 234814 : -------GAAAAgtcgaaggaaaaattagCTTCATACGTCATCGTGTACGTGTCCATG : 234861 324 : ThrPheAsnMetPheLeuLeuCysTyrIleGlyAsnLeuLeuIleGluLys >>>> : 341 |||||||||:::|||:::...||||||||||||.!. !|||! !|||:!! ThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGln++ 234862 : ACATTtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGCAGgt..... : 234917 342 : Target Intron 3 >>>> SerThrSerValGlyIleSerCysTyrMetIleAsp : 352 74 bp !!!|||!.!|||||| !!.! ||||||! !!!: ++CysThrLysValGlyGluLysValTyrMetThrGlu 234918 : ....................agTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAA : 235022 353 : TrpTyrArgLeuProValLysThrValGlnAspLeuIleLeuIleIleAlaMetSerA : 372 ||||||||||||||| !||||||!.!! ! !|||:!!:!!||||||:!!! !|||! TrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerS 235023 : TGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGA : 235082 373 : snSerProAlaLysIleSerAlaGlyArgIlePheLeuLeuSerLeuThrThrPheGl : 391 :!! ! ! !||||||!!!||||||!:!.!!.!.! !:!!|||:!!.!!|||||||| erMetValIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGl 235083 : GCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGG : 235139 392 : yAsn >>>> Target Intron 4 >>>> ValLeuLysThrSerPheAlaTyrL : 401 |:!! 71 bp |||!!!|||.!!||||||||||||! yAsp++ ++ValPheLysAlaSerPheAlaTyrP 235140 : CGATgt.........................agGTATTTAAGGCGTCTTTCGCCTACT : 235240 402 : euAsnPheValArgAsnThrIleMet : 409 !!|||.!.:!!|||!....! !||| heAsnMetIleArgThrValAlaMet 235241 : TCAACATGATCCGCACAGTTGCAATG : 235266 vulgar: gi|815911896|ref|XP_012241389.1| 18 409 . KQ414889.1 232447 235266 + 584 M 25 75 G 0 6 M 129 387 G 0 3 M 74 222 G 1 0 M 22 66 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 33 99 5 0 2 I 0 185 3 0 2 G 3 0 M 34 102 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232448 235266 584 + . gene_id 2 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232448 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232448 233208 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235144 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235144 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 235145 235146 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 235145 235215 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 235214 235215 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 235216 235266 . + . KQ414889.1 exonerate:protein2genome:local exon 235216 235266 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232448 235266 584 + . alignment_id 2 ; Query gi|815911896|ref|XP_012241389.1| ; Align 232448 19 75 ; Align 232529 44 387 ; Align 232919 173 222 ; Align 233141 248 66 ; Align 234525 271 99 ; Align 234813 307 102 ; Align 234989 341 156 ; Align 235216 393 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 520 Query range: 2 -> 393 Target range: 217114 -> 219671 3 : LeuSerValArgArgGlnThrAspProProGlnAsnThrLysTyrGluGluAspIleA : 22 |||:!!..!!.!!:!:!! !..!||| ! :!! !:!:||||||::::::|||: LeuAlaThrAsnLysGluGlnSerProArgThrAspTyrGluTyrGluLysAsnIleA 217115 : CTTGCAACAAACAAGGAACAATCCCCCAGAACCGACTACGAgtacgagaaaaatataa : 217172 23 : spTyrValThrLysHisAsnLysTrpValLeuAsnSerIleGlyMetTrpPro<-><- : 40 :: !! !:!! |||:::|||:!!|||!!. !!!!:|||:!:|||||| snLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnSe 217173 : atctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACTC : 217229 41 : >ValValAlaGluGlyIleAspLysPheLeuProLysIleIleIleGlyPheSerAsn : 58 !..!.!! !! ! |||.!!||| !|||:!:|||! !!.!!!.!!! !! rArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTyr 217230 : ACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTAC : 217286 59 : LeuValSerLeuPheThrValValGlnCysIleLeuHisIleIleLeuGluGluLysA : 78 !:!!! ! !||| ! !!|||! !||| !:!!:!!:!:.!!||||||! :!!| GlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeuGluValGluA 217287 : GGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAG : 217346 79 : spAlaLeuLeuArgLeuArgLeuLeuGlyLeuAlaCysPheAlaSerIleAsnLeuLe : 97 || !! ! !!:!|||!:!|||!!!|||! ! ! !|||..! !!!: !!!:! spLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValMetAlaPheVa 217347 : ATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGT : 217403 98 : uLysTyrTrpAlaValIleValArgLysProAsnIleGluTyrCysIleLysGlnVal : 116 !||||||!:::!!:!!||||||!.!||| !!:!!|||... ! |||:!:!:!::!:!! lLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCysValArgArgIle 217404 : CAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATC : 217460 117 : GlnThrAspTrpLysGlnValGluPheGlnLysAsnArgMetLeuMetLeuLysTyrG : 136 :!! !||||||!:!.!.|||..!! !:!!|||:!!||| ! !|||:!! ! !!! GluArgAspTrpArgAsnValArgCysGluLysAspArgGluAlaMetIleValAsnA 217461 : GAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACG : 217520 137 : lyLysIleGlyArgAspLeuThrIleTyrSerAlaValPheMetTyrSerAlaGlyIl : 155 .!!!..!!|||||| ! |||..!:!! !!!!.!! !!||||||||||||... :: laAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheVa 217521 : CGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcgt : 217577 156 : eCysTyrValThrIleMetGlnTyrAlaMetGlyMetSerLeuLysAlaAsn<->Asn : 173 : ||| ! !!!:! ! !::!:!!|||! ! !|||..!! !||| ||| lPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGluAsnGlyAsn 217578 : tttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAAC : 217634 174 : ArgThrIleArgValLeuValTyrProThrTyrSerGlyPhePheAspAlaGlnLysS : 193 ! !|||.!!! ! !||||||!:!||| ! !.! !.!!.!!|||.!!!:: ! ! LeuThrPheIleProLeuValPheProPheThrLysTyrIleIleAspThrArgTyrT 217635 : CTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACA : 217694 194 : erProIleTyrGluIleValTyrValLeuGlnCysMetCysThrPheValPheAsnSe : 212 !!|||! !!|||||||||!:! !!||||||! !!:..! ! !:!!.!.:!!.! hrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGl 217695 : CTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGG : 217751 213 : rValThrValGlyCysCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGln : 231 !:!!||| !!.!..!|||.!!||||||||| !|||!.!..!||||||||||||||| yIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGln 217752 : AATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAG : 217808 232 : IleAspValValIleSerGlnLeuAsnAspLeuValGluGlyLysPheAlaLysLysA : 251 |||!!:|||:!!!!:!:! !|||.!. !!|||:!!!!:|||!:! ||| ! ! !! IleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArg---AlaAspMetS 217809 : ATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGA---GCGGATATGA : 217865 252 : snSerAspProAsnThrArgLeuMetGluIleValLysHisHisIleArgIleLeuLy : 270 :!..! ! !:!! !|||:!! !...||||||!..!!.|||:!!||||||||||| erAspThrValAspGlyArgIleAlaSerIleValSerGlnHisValArgIleLeuLy 217866 : GCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTAAA : 217922 271 : sPheSerAlaValIleGluThrValLeuGlnGluValCysPhePheGluPheVal{Gl : 289 |! ! ! ! !|||! !! !! !..! !! !!::|||:!! :!!{ sCysValArg***IleValGlyGluCysSerLeuCysPheTrpPheGlnGlyMet{Ly 217923 : GTGTGTAAGATAGATCGTTGGTGAATGCTCGCTTTGTTTTTGGTTTCAGGGGATG{AA : 217979 290 : } >>>> Target Intron 1 >>>> {y}SerThrPheValIleCysLeuLeuG : 298 } 1305 bp {!}... ... ::: ||| : }-+ ++{s}LysTyrIleTyrValAsnLeuTyrL 217980 : }tt.........................ag{a}aaatatatttacgttaatttgtata : 219311 299 : luTyrTyrCysIleThrAspTrpGlnGlnAsnAsnLysIleGlyLeuThrThrTyrSe : 317 ::::: !!!:|||:!!..!|||:!! !! .!! !..!||||||! ysPheGluTyrGln***GluTrpLysSerAsnAspValThrSerAlaValThrTyrIl 219312 : aatttgaatatcaatAGGAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACAT : 219368 318 : rMetLeuLeuValSerLeuThrPheAsnMetPheLeuLeuCysTyrIleGlyAsnLeu : 336 !!!:||||||:!!|||||||||||||||:::|||:::...||||||||||||.!.:!! eIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIle 219369 : CATTCTACTTATATCCCTcactttcaacattttcatattttgctaCATAGGAGAGATC : 219425 337 : LeuIleGluLys >>>> Target Intron 2 >>>> SerThrSerValGlyIl : 346 :!! !|||:!: 73 bp !! ...:::||| ValAlaGluGln++ ++CysArgLysIleGlyGl 219426 : GTTGCTGAACAggt.........................agTGtaggaaaattggaga : 219528 347 : eSerCysTyrMetIleAspTrpTyrArgLeuProValLysThrValGlnAspLeuIle : 365 |||||||||!!:|||||||||||| !!! !|||! ! !! !:!! uMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerVal 219529 : aatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTT : 219585 366 : LeuIleIleAlaMetSerAsnSerProAlaLysIleSerAlaGlyArgIlePheLeuL : 385 |||! !|||||||||||||||||| !! !|||:!:!!!||||||!.!!!: !! !| LeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluL 219586 : TTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAAT : 219645 386 : euSerLeuThrThrPheGlyAsnVal : 393 |||||:!!!:!|||||| !:!!||| euSerIleSerThrPheThrAspVal 219646 : TGTCTATCAGCACTTTTACCGACGTG : 219671 vulgar: gi|815911896|ref|XP_012241389.1| 2 393 . KQ414889.1 217114 219671 + 520 M 37 111 G 0 6 M 133 399 G 0 3 M 74 222 G 1 0 M 41 123 S 0 2 5 0 2 I 0 1301 3 0 2 S 1 1 M 51 153 5 0 2 I 0 69 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217115 219671 520 + . gene_id 3 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217115 217980 . + . KQ414889.1 exonerate:protein2genome:local exon 217115 217980 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 217981 217982 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 217981 219285 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219284 219285 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219286 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219286 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217115 219671 520 + . alignment_id 3 ; Query gi|815911896|ref|XP_012241389.1| ; Align 217115 3 111 ; Align 217232 40 399 ; Align 217634 173 222 ; Align 217856 248 123 ; Align 219287 290 153 ; Align 219513 341 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 492 Query range: 13 -> 405 Target range: 256625 -> 258729 14 : AsnThrLysTyrGluGluAspIleAspTyrValThrLysHisAsnLysTrpValLeuA : 33 !!.|||!!.!:!:!!... !!! !|||||| ! !:!! |||::!||| !!|||! LysThrAsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuL 256626 : AAGACGAATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGA : 256683 34 : snSerIleGlyMetTrpProValValAlaGlu<-><->GlyIleAspLysPheLeuPr : 50 !. !!|||||| |||||| ! !:!!... !:!!!!:::! !:!! ! ysProIleGlyAlaTrpProProSerSerSerThrThrThrLeuGluArgAsnValSe 256684 : AACCTATAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTC : 256740 51 : oLysIleIleIleGlyPheSerAsnLeuValSerLeuPheThrValValGlnCysIle : 69 !! :!!:!:! ! ! !!!!! !! ! !! !|||||||||:!!:!!! |||:!: rIleValLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIleProCysLeu 256741 : GATCGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGTTTG : 256797 70 : LeuHisIleIleLeuGluGluLysAspAlaLeuLeuArgLeuArgLeuLeuGlyLeuA : 89 ||||||:!!.!!|||!!:!!: ! ..! !! :::::::::::: ...|||! ! LeuHisValPheLeuAspAspAspSerPheTyrMetLysValLysAsnPheGlyProM 256798 : CTCCATGTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtCCTA : 256857 90 : laCysPheAlaSerIleAsnLeuLeuLysTyrTrpAlaValIleValArgLysProAs : 108 ! !! ! !! !|||!:!! ! !!!.||| ! !:!!:!::!!!:! ! !:! etSerHisTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAs 256858 : TGAGCCATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGA : 256914 109 : nIleGluTyrCysIleLysGlnValGlnThrAspTrpLysGlnValGluPheGlnLys : 127 !|||...||||||:!!:!!!!.:!!:!!|||||||||!:!..!|||..! :!!||| pIleArgTyrCysValGluHisIleGluThrAspTrpArgMetValArgArgGluLys 256915 : CATACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAG : 256971 128 : AsnArgMetLeuMetLeuLysTyrGlyLysIleGlyArgAspLeuThrIleTyrSerA : 147 :!!!:!...:!!|||:!!||| !!!.!!:!.!!|||||| !!:!!.!!! !!:!!!!| AspGlnGlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheCysA 256972 : GATCAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCG : 257031 148 : laValPheMetTyrSerAlaGlyIleCysTyrValThrIleMetGlnTyrAlaMetGl : 166 ||!.!.!!||| ! |||!.! ...|||::: ..! ! ! !! !! laAlaIleMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAsnThrGl 257032 : CAGCTATCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACACGGA : 257088 167 : yMetSerLeuLysAlaAsnAsnArgThrIle<->ArgValLeuValTyrProThrTyr : 184 !!!:! !! ! !!.!|||.!.! !|||||| ||||||||| ! ! !!..!||| uIleIleHisValGlyAsnGluThrThrIleValArgValLeuProValThrValTyr 257089 : GATAATTCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTGTAC : 257145 185 : SerGlyPhePheAspAlaGlnLysSerProIleTyrGluIleValTyrValLeuGlnC : 204 !.! !.!.!!.:!!!.!.!.:!!||||||! !!||||||||| ! !!:!!||| LysLysLeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheMetGlnT 257146 : AAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAA : 257205 205 : ysMetCysThrPheValPheAsnSerValThrValGlyCysCysGlyLeuAlaAlaLe : 223 ! !! :!!.!!:!! !.!!!! !||||||.!! ! !.!!|||||||||:! hrTrpSerSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAlaAlaVa 257206 : CTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGT : 257262 224 : uPheValThrHisAlaCysGlyGlnIleAspValValIleSerGlnLeuAsnAspLeu : 242 !|||!.!|||||||||! !||||||:!: !|||:!!!!:||| !:!!!..!!:!!! lPheAlaThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGluPhe 257263 : TTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTT : 257319 243 : ValGluGlyLysPheAlaLysLysAsnSerAspProAsnThrArgLeuMetGluIleV : 262 |||.!.! !..! !::::::...::: ||| !! !!:!:!! ! !|||| ValAsnGluSerArgAsnArgGluLysThrPheProPheLysGlnIleGlyValIleV 257320 : GTGAATGAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGATTG : 257379 263 : alLysHisHisIleArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s : 270 ||:!!||||||:!!|||:!:|||{!:} 760 bp {! alGluHisHisLeuArgValLeu{Ar}++ +-{g 257380 : TGGAGCATCATTTAAGAGTGCTG{AG}gt.........................ac{G : 258165 271 : }PheSerAlaValIleGluThrValLeuGlnGluValCysPhePheGluPheValGly : 289 }! ! ! ! ! !.!. !:!!! !|||.!.! !! ! ! !:! !..! }CysValMetTyrArgAsnLeuLeuGlnGlnAsnGly***AsnArgThrTyrAsnAsn 258166 : }TGCGTTATGTACCGAAACCTGTTGCAACAAAATGGTTAAAATCGTACCTACAATAAT : 258220 290 : SerThrPheValIleCysLeuLeuGluTyrTyrCysIleThrAspTrpGlnGlnAsnA : 309 ! ! !!.!. !! ::: :::||| ... :::|||... !...: PheProIleHisSerTyrSerValIlePheTyrTyrPheGlnGluTrpSerThrGlnA 258221 : TTTCCTATACACAGctattctgttattttttattattttcaggaATGGTCTACGCaag : 258280 310 : snLysIleGlyLeuThrThrTyrSerMetLeuLeuValSerLeuThrPheAsnMetPh : 328 :: ...|||::::::|||! !|||:!!|||:!!||||||:::||||||:::|| spIleGlnAsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePh 258281 : atattcaaaatttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttt : 258337 329 : eLeuLeuCysTyrIleGlyAsnLeuLeuIleGluLys >>>> Target Intron : 341 |::::::||||||||||||.!.:!!|||! !|||:!! 90 bp eValIleCysTyrIleGlyGluIleLeuThrGluGln++ 258338 : tgtaatatgttACATAGGTGAAATATTAACAGAACAGgt................... : 258378 342 : 2 >>>> SerThrSerValGlyIleSerCysTyrMetIleAspTrpTyrArgLeuPr : 357 !!!! !!.!|||||| ! ! !||||||! !||||||||| !||||| ++CysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuPr 258379 : ......agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACC : 258514 358 : oValLysThrValGlnAspLeuIleLeuIleIleAlaMetSerAsnSerProAlaLys : 376 |! !|||! !:!!! ||||||||||||:!!|||||| |||!:! ! !!.!:!! oAspLysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGln 258515 : TGACAAAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAA : 258571 377 : IleSerAlaGlyArgIlePheLeuLeuSerLeuThrThrPheGlyAsn >>>> Tar : 393 |||!!!||||||:::...||| ::!|||:!! !||||||.!!:!! IleThrAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAsp++ 258572 : ATCACCGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATgt........ : 258624 394 : get Intron 3 >>>> ValLeuLysThrSerPheAlaTyrLeuAsnPheValArg : 405 69 bp |||:!!||||||||||||||||||||||||!!.:!!||| ++ValIleLysThrSerPheAlaTyrLeuAsnLeuLeuArg 258625 : .................agGTAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGT : 258727 vulgar: gi|815911896|ref|XP_012241389.1| 13 405 . KQ414889.1 256625 258729 + 492 M 30 90 G 0 6 M 133 399 G 0 3 M 93 279 S 0 2 5 0 2 I 0 756 3 0 2 S 1 1 M 70 210 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256626 258729 492 + . gene_id 4 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256626 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256626 257404 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 258164 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258163 258164 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 258165 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258165 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258729 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258729 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256626 258729 492 + . alignment_id 4 ; Query gi|815911896|ref|XP_012241389.1| ; Align 256626 14 90 ; Align 256722 44 399 ; Align 257124 177 279 ; Align 258166 271 210 ; Align 258466 341 156 ; Align 258691 393 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 481 Query range: 13 -> 405 Target range: 259745 -> 262192 14 : AsnThrLysTyrGluGluAspIleAspTyrValThrLysHisAsnLysTrpValLeuA : 33 .!.|||!..!:! ... !!! !|||||| ! !:!! !|||::!||| !!|||! GluThrSerPheThrSerHisSerAspTyrSerLeuGlnPheAsnArgTrpPheLeuL 259746 : GAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCCAATTTAATCGATGGTTCCTGA : 259803 34 : snSerIleGlyMetTrpProValValAlaGlu<-><->GlyIleAspLysPheLeuPr : 50 !. !!|||||| |||||| ! !:!!... !!:!!!!:|||.!!:!! ! ysProIleGlyAlaTrpProProSerSerSerThrThrArgLeuGluLysIleIleSe 259804 : AACCGATAGGCGCTTGGCCACCTTCATCCTCCACGACCAGACTCGAGAAGATCATCTC : 259860 51 : oLysIleIleIleGlyPheSerAsnLeuValSerLeuPheThrValValGlnCysIle : 69 ! |||:!:||| !.!!!!! !! !..!! !||| !!|||:!!:!!! !|||:!! rValIleLeuIlePheIleCysTyrSerThrIleLeuValThrLeuIleProCysVal 259861 : TGTTATCCTGATCTTTATCTGCTACAGTACCATACTGGTCACCCTGATCCCGTGCGTA : 259917 70 : LeuHisIleIleLeuGluGluLysAspAlaLeuLeuArgLeuArgLeuLeuGlyLeuA : 89 ||||||!!::!!||||||:!!:!!..! !! !:!!!:! !!:!:!!||||||! ! LeuHisMetLeuLeuGluLysGluSerLeuTyrMetLysThrLysValLeuGlyProL 259918 : CTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGAAGGTGCTCGGTCCTC : 259977 90 : laCysPheAlaSerIleAsnLeuLeuLysTyrTrpAlaValIleValArgLysProAs : 108 ! ! ! !! !:!!..!! !:!!!!.||| .!!:!!:!::!!||| !:! euThrHisTrpPheValGlyCysIleAsnTyrThrThrLeuLeuLeuArgGlyArgAs 259978 : TTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTGTTGAGAGGCAGAGA : 260034 109 : nIleGluTyrCysIleLysGlnValGlnThrAspTrpLysGlnValGluPheGlnLys : 127 !||| !|||:!::!!!!.|||:!!!.!||||||!:! :!! ! :!!||| pIleLeuSerCysValGluHisValGluAsnAspTrpArgIleIleThrArgGluLys 260035 : CATACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGAATTATAACGAGGGAGAAG : 260091 128 : AsnArgMetLeuMetLeuLysTyrGlyLysIleGlyArgAspLeuThrIleTyrSerA : 147 :!!!:!! :!!||||||!:!|||!.!|||.!!|||||| !!:!!.!! !! !!!!| AspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgTyrValAlaAlaSerCysA 260092 : GATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGATACGTCGCTGCCTCTTGCG : 260151 148 : laValPheMetTyrSerAlaGlyIleCysTyrValThrIleMetGlnTyrAlaMetGl : 166 ||!.!|||:!! ! .!!!.!! !:!:|||!:! ! !:!!! ! !! ::!! ! laAlaPheValGlnGlyGlyValLeuCysPheCysLeuValThrValLeuSerThrGl 260152 : CGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGA : 260208 167 : yMetSerLeuLysAlaAsn<->AsnArgThrIleArgValLeuValTyrProThrTyr : 184 !:!!! !! ! !!.!||| !..|||! !:!!!.!:!!||| !! ! !!..!||| uValIleGlnValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaValTyr 260209 : GGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTGCCGTGCGCGGTGTAC : 260265 185 : SerGlyPhePheAspAlaGlnLysSerProIleTyrGluIleValTyrValLeuGlnC : 204 !.!! !.!..!.:!!!.!.!. ! ||||||!!: !!||||||||| !|||:!!|||! LysGluLeuIleAsnValAsnAspSerProMetAsnGluIleValLeuValValGlnP 260266 : AAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGATTGTTCTCGTCGTGCAAT : 260325 205 : ysMetCysThrPheValPheAsnSerValThrValGlyCysCysGlyLeuAlaAlaLe : 223 !:!:! !|||:!! ! |||||| !||||||||| !! !.!!|||||||||:! heValSerGlyPheIleValAsnSerSerThrValGlyIlePheSerLeuAlaAlaVa 260326 : TCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGT : 260382 224 : uPheValThrHisAlaCysGlyGlnIleAspValValIleSerGlnLeuAsnAspLeu : 242 !.!...!.!!|||||||||||||||:!::!!|||:!!!!:..! !:!!!..!!:!!! lLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMetGluTrpIleThrGluPhe 260383 : TCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAATGGATCACGGAGTTT : 260439 243 : ValGluGlyLysPheAlaLysLysAsnSerAspProAsnThrArgLeuMetGluIleV : 262 |||!!:! !..! !!:!|||!!.!.!! !||| !! !..!:!! ! !|||| ValAspGluSerArgAsnArgLysLysLysAlaProPheLysGluIleGlyValIleV 260440 : GTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTCCTTTCAAGGAGATCGGAGTGATTG : 260499 263 : alLysHisHisIleArgIleLeuLysPheSerAlaValIleGluThrValLeuGlnGl : 281 ||:!!||||||:!:||| !|||! !! ..! ! !! ! ||| !!:!!!:! ! alGluHisHisLeuArgAlaLeuThr***AspLeuPheAspIleThrPheValArg** 260500 : TCGAACATCATTTGAGAGCACTCACGTAAGATTTGTTTGATATTACTTTTGTACGATA : 260556 282 : uValCysPhePheGluPheValGlySerThrPheValIleCysLeu{Le} >>>> T : 297 ! ! !|||.!. ||||||||||||...::: |||{:!} *ArgIlePheIleIleThrValGlySerThrIleIle***LysLeu{Il}++ 260557 : AAGGATTTTTATAATTACGGTAGGATCTactataatttgaaaatta{at}gt...... : 260608 298 : arget Intron 1 >>>> {u}GluTyrTyrCysIleThrAspTrpGlnGlnAsnA : 309 1109 bp {!} :::::: ::: !!:||| :!!.!.: -+{e}TyrPhePheLeuLeuGlnGluTrpAlaGluGlnA 260609 : ...................tg{a}tatttctttcttttgcagGAATGGGCTGAGCAAG : 261749 310 : snLysIleGlyLeuThrThrTyrSerMetLeuLeuValSerLeuThrPheAsnMetPh : 328 !!! ! !..!|||:!!||||||! !|||:!!|||:!!:!!:!! !||||||:!:|| spIleGlnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPh 261750 : ATATACAAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATT : 261806 329 : eLeuLeuCysTyrIleGlyAsnLeuLeuIleGluLys >>>> Target Intron : 341 |:!!:!!||||||||||||.!.:!!|||! |||:!! 81 bp eIleIleCysTyrIleGlyGluIleLeuThrGluGln++ 261807 : TATAATCTGTTACATCGGTGAAATACTAACGGAACAGgt................... : 261847 342 : 2 >>>> SerThrSerValGlyIleSerCysTyrMetIleAspTrpTyrArgLeuPr : 357 !!!:!!!.!|||||| ! ! !||||||! !:!!|||||| !||||| ++CysSerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuPr 261848 : ......agTGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACC : 261974 358 : oValLysThrValGlnAspLeuIleLeuIleIleAlaMetSerAsnSerProAlaLys : 376 |! !|||!:!:!!! ||||||||||||||||||||| !!!!. !!|||!.!!!. oAspLysSerIleLeuAspLeuIleLeuIleIleAla---ArgLysProProGlyAsn 261975 : TGATAAAAGTATCCTTGATTTGATTTTGATCATTGCA---CGAAAACCGCCGGGAAAT : 262028 377 : IleSerAlaGlyArgIlePheLeuLeuSer{Le} >>>> Target Intron 3 > : 387 ! ! ! !!|||.!! ! !! !:!!{:!} 75 bp ***PheLysCysArgPheThrArgSerAla{Il}++ 262029 : TAGTTCAAATGTCGGTTTACACGTTCGGCG{AT}gt...................... : 262065 388 : >>> {u}ThrThrPheGlyAsnValLeuLysThrSerPheAlaTyrLeuAsnPheVa : 404 {!} !! !.!. !.!.|||:!!||||||:!!|||||||||||||||.!.:! ++{e}ProLeuIlePheGlnValValLysThrAlaPheAlaTyrLeuAsnLeuLe 262066 : ...ag{T}CCGTTGATATTCCAGGTGGTTAAAACTGCTTTCGCGTATCTGAATCTGTT : 262187 405 : lArg : 405 !||| uArg 262188 : GCGT : 262192 vulgar: gi|815911896|ref|XP_012241389.1| 13 405 . KQ414889.1 259745 262192 + 481 M 30 90 G 0 6 M 129 387 G 0 3 M 124 372 S 0 2 5 0 2 I 0 1105 3 0 2 S 1 1 M 43 129 5 0 2 I 0 77 3 0 2 M 29 87 G 1 0 M 16 48 S 0 2 5 0 2 I 0 71 3 0 2 S 1 1 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259746 262192 481 + . gene_id 5 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259746 260605 . + . KQ414889.1 exonerate:protein2genome:local exon 259746 260605 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260606 260607 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 260606 261714 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261713 261714 . + . intron_id 0 ; splice_site "tg" KQ414889.1 exonerate:protein2genome:local cds 261715 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261715 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262062 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262062 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 262063 262064 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 262063 262137 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 262136 262137 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 262138 262192 . + . KQ414889.1 exonerate:protein2genome:local exon 262138 262192 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259746 262192 481 + . alignment_id 5 ; Query gi|815911896|ref|XP_012241389.1| ; Align 259746 14 90 ; Align 259842 44 387 ; Align 260232 173 372 ; Align 261716 298 129 ; Align 261926 341 87 ; Align 262013 371 48 ; Align 262139 388 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 384 Query range: 16 -> 303 Target range: 226912 -> 228175 17 : TyrGluGluAspIleAspTyrValThrLysHisAsnLysTrpValLeuAsnSerIleG : 36 |||:!!||| !!:!::!! !! !:!! |||:::|||:!!|||!!. !!:!!| TyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuG 226913 : TATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCG : 226970 37 : lyMetTrpProValValAlaGluGly<-><->IleAspLysPheLeuProLysIleIl : 53 ||!!:|||||| ! ! !:!!.!! |||! !:!! !!!! !! !:!:!! lyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMe 226971 : GTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGAT : 227027 54 : eIleGlyPheSerAsnLeuValSerLeuPheThrValValGlnCysIleLeuHisIle : 72 : ! !.!!!!! !! !:!!! ! !||| !:!!|||..! !! !|||:!!:!: tGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrVal 227028 : GGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTG : 227084 73 : IleLeuGluGluLysAspAlaLeuLeuArgLeuArgLeuLeuGlyLeuAlaCysPheA : 92 :!!||||||! !|||! !|||! ! !! !|||!:!:!!:!!|||! ! !! !||| ValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPheP 227085 : GTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCT : 227144 93 : laSerIleAsnLeuLeuLysTyrTrpAlaValIleValArgLysProAsnIleGluTy : 111 !:!!!!:::!||||||||||||! !:!!! !!!.!:!! !:!!||| ! heAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGl 227145 : TCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGA : 227201 112 : rCysIleLysGlnValGlnThrAspTrpLysGlnValGluPheGlnLysAsnArgMet : 130 |||:!!:!!!:!:!!:!! !|||||||||.!.:!!..!!:!! !:!!:!!|||! uCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsn 227202 : GTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAAC : 227258 131 : LeuMetLeuLysTyrGlyLysIleGlyArgAspLeuThrIleTyrSerAlaValPheM : 150 :!!|||:!!! !|||!.! ! !|||||| ! |||! !! ! !!!!.!! !!|||: ValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheV 227259 : GTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCG : 227318 151 : etTyrSerAlaGlyIle<->CysTyrValThrIleMetGlnTyrAlaMetGlyMetSe : 168 !:!:!|||::: ::: |||:!!..!:!! !!||| .!!:!::! alPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerValAl 227319 : TCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGC : 227375 169 : rLeuLysAlaAsnAsnArgThrIleArgValLeuValTyrProThrTyrSerGlyPhe : 187 ! !:!!! !...|||!.!!:! !! ! !:!! !!:!||| ! !.! !.!! aThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIleIle 227376 : AACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATC : 227432 188 : PheAspAlaGlnLysSerProIleTyrGluIleValTyrValLeuGlnCysMetCysT : 207 !|||!.!!:: ! ||||||.!! !!|||||| !!!:! !:!!|||! !:!: AlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValThrG 227433 : GCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAG : 227492 208 : hrPheValPheAsnSerValThrValGlyCysCysGlyLeuAlaAlaLeuPheValTh : 226 !.!!|||!!.:!!.!!|||||| !!.!..!|||.!!:!!|||||||||.!!!.!.. lyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaVa 227493 : GTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGT : 227549 227 : rHisAlaCysGlyGlnIleAspValValIleSerGlnLeuAsnAspLeuValGluGly : 245 !|||||||||||||||!!:!!:|||:!!:!:||| !|||... !!|||:!!!!:||| lHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGly 227550 : TCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGC : 227606 246 : LysPheAlaLysLysAsnSerAspProAsnThrArgLeuMetGluIleValLysHisH : 265 !:! ||| ! ! !!:!!.! ! !:!! !|||:!! ...||||||! |||| Arg---AlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValThrHisH 227607 : AGA---GCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACC : 227663 266 : isIleArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheSerAl : 273 ||:!!|||||||||{!!} 396 bp {.}||| !|| isValArgIleLeu{As}++ ++{n}PheLeuAl 227664 : ACGTTCGAATATTG{AA}gt.........................ag{C}TTTCTGGC : 228083 274 : aValIleGluThrValLeuGlnGluValCysPhePheGluPheValGlySerThrPhe : 292 |:!!||||||! !..!:!!|||:!!:!!..!||| ! ||||||:!!|||!!!|||.!. aLeuIleGluLysThrMetGlnGlnIleAlaPheValGluPheLeuGlyCysThrIle 228084 : CCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGTACAATA : 228140 293 : ValIleCysLeuLeuGluTyrTyrCysIleThr : 303 :!!:!:||||||:!!||||||||| !|||||| IleLeuCysLeuIleGluTyrTyrIleIleThr 228141 : ATTCTGTGCCTCATCGAGTATTACATCATAACG : 228175 vulgar: gi|815911896|ref|XP_012241389.1| 16 303 . KQ414889.1 226912 228175 + 384 M 28 84 G 0 6 M 111 333 G 0 3 M 91 273 G 1 0 M 22 66 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226913 228175 384 + . gene_id 6 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226913 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226913 227679 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226913 228175 384 + . alignment_id 6 ; Query gi|815911896|ref|XP_012241389.1| ; Align 226913 17 84 ; Align 227003 45 333 ; Align 227339 156 273 ; Align 227612 248 66 ; Align 228077 271 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 367 Query range: 13 -> 269 Target range: 284496 -> 285285 14 : AsnThrLysTyrGluGluAspIleAspTyrValThrLysHisAsnLysTrpValLeuA : 33 :!!:!!! !!::!!: !||| ||| !..!:!! |||:::||| !!|||! AspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuL 284497 : GATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCA : 284554 34 : snSerIleGlyMetTrpPro<-><->ValValAlaGluGlyIleAspLysPheLeuPr : 50 !. !!||||||:!:|||||| :!! !!.! !:!:!!:|||.!! ! ! ysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSe 284555 : AACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTC : 284611 51 : oLysIleIleIleGlyPheSerAsnLeuValSerLeuPheThrValValGlnCysIle : 69 ! !:!!:!! !.!!||| !!!!:!!! ! !||| !:!!|||! !||| ! rValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAla 284612 : CGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCT : 284668 70 : LeuHisIleIleLeuGluGluLys<->AspAlaLeuLeuArgLeuArgLeuLeuGlyL : 88 ||| !! !:!:|||!!::!!! ||| ! ! !!:!:!!!:!:!!:!!|||! LeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyP 284669 : CTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTC : 284728 89 : euAlaCysPheAlaSerIleAsnLeuLeuLysTyrTrpAlaValIleValArgLysPr : 107 ! ! !!|||..!! !!!: !:!!||||||!:: !:!!||| !||| roLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGl 284729 : CTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGG : 284785 108 : oAsnIleGluTyrCysIleLysGlnValGlnThrAspTrpLysGlnVal<-><-><-> : 124 !!!.|||! ! |||:!:|||.!.:!!!::.!!||||||...! ..! yLysIleGlyGlnCysValLysAspIleArgAlaAspTrpSerLeuThrLeuSerHis 284786 : CAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCAT : 284842 125 : GluPheGlnLysAsnArgMetLeuMetLeuLysTyrGlyLysIleGlyArgAspLeuT : 143 ... ::::::...||| :::||| ! ! !!.!!:!|||||||||..!|||. SerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuA 284843 : AGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGG : 284902 144 : hrIleTyrSerAlaValPheMetTyrSerAlaGlyIleCysTyrValThrIleMetGl : 162 !!|||!:!!!!|||! !||||||||||||!.!|||.!!! !|||..!|||:!:|||! laIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetPr 284903 : CGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCC : 284959 163 : nTyrAlaMetGlyMetSerLeuLysAlaAsnAsnArgThrIleArgValLeuValTyr : 181 !! ..!! ! ! !!! !! !:!!|||..!|||:!:||| !! !!.!!:! oLeuCysThrValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPhe 284960 : GTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTC : 285016 182 : ProThrTyrSerGlyPhePheAspAlaGlnLysSerProIleTyrGluIleValTyrV : 201 |||! !||| !!|||.!!.!!||| !!!::! |||||| !:!||||||||| ! ProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnP 285017 : CCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAAT : 285076 202 : alLeuGlnCysMetCysThrPheValPheAsnSerValThrValGlyCysCysGlyLe : 220 !!:!!||||||:!!..!.!!||||||.!. !!|||||||||||||||..!|||.!!|| heMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLe 285077 : TCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTT : 285133 221 : uAlaAlaLeuPheValThrHisAlaCysGlyGlnIleAspValValIleSerGlnLeu : 239 |||||||:!!||||||! !|||!.!|||||||||.!! :!!:!!:!:!!!:!!||| uAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeu 285134 : GGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTG : 285190 240 : AsnAspLeuValGluGlyLysPheAlaLysLysAsn<->SerAspProAsnThrArgL : 258 :!! ! ||||||!!:||| ! !.!!:!|||... ||| ! !.!. !|||| AspLysLeuValAspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgL 285191 : GATAAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGAC : 285250 259 : euMetGluIleValLysHisHisIleArgIleLeu : 269 || !!:|||:!!:!!||||||:!:!:!|||||| euGlyAspIleIleGluHisHisLeuLysIleLeu 285251 : TGGGAGATATCATCGAGCATCATCTGAAGATACTG : 285285 vulgar: gi|815911896|ref|XP_012241389.1| 13 269 . KQ414889.1 284496 285285 + 367 M 26 78 G 0 6 M 38 114 G 0 3 M 46 138 G 0 9 M 128 384 G 0 3 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284497 285285 367 + . gene_id 7 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284497 285285 . + . KQ414889.1 exonerate:protein2genome:local exon 284497 285285 . + . insertions 21 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284497 285285 367 + . alignment_id 7 ; Query gi|815911896|ref|XP_012241389.1| ; Align 284497 14 78 ; Align 284581 40 114 ; Align 284698 78 138 ; Align 284845 124 384 ; Align 285232 252 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 360 Query range: 13 -> 269 Target range: 278549 -> 279338 14 : AsnThrLysTyrGluGluAspIleAspTyrValThrLysHisAsnLysTrpValLeuA : 33 :!!:!!! !!::.!. !||| ||| !..!:!! |||:::||| !!|||! AspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuL 278550 : GATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCA : 278607 34 : snSerIleGlyMetTrpPro<-><->ValValAlaGluGlyIleAspLysPheLeuPr : 50 !. !!||||||:!:|||||| :!! !!.! !:!:!!:|||.!! ! ! ysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSe 278608 : AACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTC : 278664 51 : oLysIleIleIleGlyPheSerAsnLeuValSerLeuPheThrValValGlnCysIle : 69 ! !:!!:!! !.!!||| !!!!:!!! ! !||| !:!!|||! !||| ! rValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAla 278665 : CGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCT : 278721 70 : LeuHisIleIleLeuGluGluLys<->AspAlaLeuLeuArgLeuArgLeuLeuGlyL : 88 ||| !! !:!:|||!!::!!! ||| ! ! !!:!:!!!:!:!!:!!|||! LeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyP 278722 : CTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTC : 278781 89 : euAlaCysPheAlaSerIleAsnLeuLeuLysTyrTrpAlaValIleValArgLysPr : 107 ! ! !!|||..!!!!!!: !:!!||||||!:: !:!!!!: !||| roLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGl 278782 : CTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGG : 278838 108 : oAsnIleGluTyrCysIleLysGlnValGlnThrAspTrpLys<-><-><->GlnVal : 123 !!!.|||! ! |||:!:!!..!.:!!!::|||||||||... ..! ! yLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyr 278839 : CAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTAT : 278895 124 : GluPheGlnLysAsnArgMetLeuMetLeuLysTyrGlyLysIleGlyArgAspLeuT : 143 ... ::::::...||| :::||| ! ! !!.!!:!|||||||||..!|||. ArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuA 278896 : CGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGG : 278955 144 : hrIleTyrSerAlaValPheMetTyrSerAlaGlyIleCysTyrValThrIleMetGl : 162 !!|||!:!||||||! !||||||||||||!.!|||:!!! !|||..!.!!:!:|||! laIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetPr 278956 : CGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCC : 279012 163 : nTyrAlaMetGlyMetSerLeuLysAlaAsnAsnArgThrIleArgValLeuValTyr : 181 !! ! ! ! !!! !! !:!!|||..!|||:!:||| !! !!.!!:! oLeuPheAlaValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPhe 279013 : GTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTC : 279069 182 : ProThrTyrSerGlyPhePheAspAlaGlnLysSerProIleTyrGluIleValTyrV : 201 |||! !||| !!|||.!!.!!||| !!!::! |||||| !:!||||||||| ! ProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnP 279070 : CCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAAT : 279129 202 : alLeuGlnCysMetCysThrPheValPheAsnSerValThrValGlyCysCysGlyLe : 220 !!:!!||||||:!!..!.!!||||||!!. !!|||||||||||||||..!|||.!!|| heMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLe 279130 : TCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTT : 279186 221 : uAlaAlaLeuPheValThrHisAlaCysGlyGlnIleAspValValIleSerGlnLeu : 239 | !|||:!!||||||! !|||!.!|||||||||.!! :!!:!!:!:!!!:!!||| uIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeu 279187 : GATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTG : 279243 240 : AsnAspLeuValGluGly<->LysPheAlaLysLysAsnSerAspProAsnThrArgL : 258 :!! ! |||:!!!!:||| ||| !|||!.. ||| ! !.!. !|||| AspLysLeuIleAspGlyValLysGlyArgLysSerLeuSerThrHisGluGlnArgL 279244 : GATAAGCTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGAC : 279303 259 : euMetGluIleValLysHisHisIleArgIleLeu : 269 || !!:|||:!!:!!||||||:!:!:!|||||| euGlyAspIleIleGluHisHisLeuLysIleLeu 279304 : TGGGAGATATCATCGAGCATCATCTGAAGATACTG : 279338 vulgar: gi|815911896|ref|XP_012241389.1| 13 269 . KQ414889.1 278549 279338 + 360 M 26 78 G 0 6 M 38 114 G 0 3 M 44 132 G 0 9 M 124 372 G 0 3 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278550 279338 360 + . gene_id 8 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278550 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278550 279338 . + . insertions 21 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278550 279338 360 + . alignment_id 8 ; Query gi|815911896|ref|XP_012241389.1| ; Align 278550 14 78 ; Align 278634 40 114 ; Align 278751 78 132 ; Align 278892 122 372 ; Align 279267 246 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 348 Query range: 16 -> 271 Target range: 221360 -> 222131 17 : TyrGluGluAspIleAspTyrValThrLysHisAsnLysTrpValLeuAsnSerIleG : 36 |||:!! !:!!:!: ! ! !..!:!! !:!:::|||:!!|||!!. !!|||| TyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleG 221361 : TACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCG : 221418 37 : lyMetTrpProValValAla<-><->GluGlyIleAspLysPheLeuProLysIleIl : 53 ||:!:|||||| ! !||| ... !:!!!!:!:!!:!||| ! !:!:|| lyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLeuIl 221419 : GTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCTGAT : 221475 54 : eIleGlyPheSerAsnLeuValSerLeuPheThrValValGlnCysIleLeuHisIle : 72 |! !! ! !!!!! !! !:!!! ! !||| !:!!|||! |||! !|||:!!:!: eAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyrVal 221476 : AAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTG : 221532 73 : IleLeuGluGluLysAspAlaLeuLeuArgLeuArgLeuLeuGlyLeuAlaCysPheA : 92 |||||||||! !:!!|||!.!! ! !|||:!!!:!|||||||||! ! ! !!|||. IleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheC 221533 : ATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCT : 221592 93 : laSerIleAsnLeuLeuLysTyrTrpAlaValIleValArgLysProAsnIleGluTy : 111 .! !!!: !!!||||||||| !:!!|||:!! !:!! !:!!|||... ! ysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGl 221593 : GCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGA : 221649 112 : rCysIleLysGlnValGlnThrAspTrpLysGlnValGluPheGlnLysAsnArgMet : 130 ||||||:!!!:::!!:!! !|||||||||.!.:!! !:!...|||:!!!:! uCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLysAsp 221650 : GTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAGGAT : 221706 131 : LeuMetLeuLysTyrGlyLysIleGlyArgAspLeuThrIleTyrSerAlaValPheM : 150 :!!|||:!!:!! !!!.!! .!!|||||| |||! !!!: !!!!.!! !!|||| IleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheM 221707 : ATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCA : 221766 151 : etTyrSerAlaGlyIleCysTyrValThrIleMetGlnTyrAlaMetGly<->MetSe : 168 ||||||||... ::: ||| ! !!!:! !!:!::!:!!||| !!: ! etTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIlePr 221767 : TGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCC : 221823 169 : rLeuLysAlaAsnAsnArgThrIleArgValLeuValTyrProThrTyrSerGlyPhe : 187 ! !:!!! ! ||| |||... !:!!|||!:!||| !! !!! !.!! oAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPheIle 221824 : TGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATC : 221880 188 : PheAspAlaGlnLysSerProIleTyrGluIleValTyrValLeuGlnCysMetCysT : 207 !!|||.!!!:! ! ||||||:!! !!||||||:!!!:! !|||||| !|||... ValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaG 221881 : GTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGG : 221940 208 : hrPheValPheAsnSerValThrValGlyCysCysGlyLeuAlaAlaLeuPheValTh : 226 ! !:!!.!.:!!|||:!!||| !!.!..!|||.!!|||!.!|||:!!|||!.!.. lyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaVa 221941 : GTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGT : 221997 227 : rHisAlaCysGlyGlnIleAspValValIleSerGlnLeuAsnAspLeuValGluGly : 245 !|||||||||||||||!!:.!.|||:!!!!:||| !|||!!. !!|||:!!.!.||| lHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsnGly 221998 : GCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGC : 222054 246 : LysPheAlaLysLysAsnSerAspProAsnThrArgLeuMetGluIleValLysHisH : 265 ::! ||| ! ! ! !!:!:!! !:!!! !|||:!! !:!!||||||!!.!!.| Arg---AlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnH 222055 : CGG---GCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAAC : 222111 266 : isIleArgIleLeuLysPhe : 271 ||:!!|||||||||:!!!:! isValArgIleLeuGlnTyr 222112 : ACGTTCGAATATTGCAGTAT : 222131 vulgar: gi|815911896|ref|XP_012241389.1| 16 271 . KQ414889.1 221360 222131 + 348 M 26 78 G 0 6 M 124 372 G 0 3 M 80 240 G 1 0 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221361 222131 348 + . gene_id 9 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221361 222131 . + . KQ414889.1 exonerate:protein2genome:local exon 221361 222131 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221361 222131 348 + . alignment_id 9 ; Query gi|815911896|ref|XP_012241389.1| ; Align 221361 17 78 ; Align 221445 43 372 ; Align 221820 167 240 ; Align 222060 248 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 344 Query range: 7 -> 270 Target range: 289690 -> 290482 8 : GlnThrAspProProGlnAsnThrLysTyrGluGluAspIleAspTyrValThrLysH : 27 ...!:!|||! !|||..!||| !:::|||||| !|||||| !|||..! !:!! SerSerAspArgProSerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluL 289691 : AGCAGCGATCGTCCGTCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAAT : 289748 28 : isAsnLysTrpValLeuAsnSerIleGlyMetTrpProValVal<-><-><->AlaGl : 43 ! ! |||:!!|||!!. !!|||||||||!::||| !!||| |||.. euCysHisTrpIleLeuLysProIleGlyMetTyrProPheValPheSerArgAlaSe 289749 : TATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAG : 289805 44 : uGlyIleAspLysPheLeuProLysIleIleIleGlyPheSerAsnLeuValSerLeu : 62 . !! !!!:::! ! !! !:!::!:||| ! ! !!! !! !:!! !! ! rArgArgGluArgThrAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGln 289806 : CAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAG : 289862 63 : PheThrValValGlnCysIleLeuHisIleIleLeuGluGluLysAspAlaLeuLeuA : 82 |||! !:!!|||! !! !! !! !|||:!!:!!!!!...!!:!!.||| ! ! ! PheIleIleValProPheSerHisHisValLeuPheSerAspAsnAspMetAsnThrP 289863 : TTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGT : 289922 83 : rgLeuArgLeuLeuGlyLeuAlaCysPheAlaSerIleAsnLeuLeuLysTyrTrpAl : 101 !:!!!:! !||||||! ! ! |||..!! !! !!..!!!!!!||||||!! heValLysAsnLeuGlyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTy 289923 : TCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTA : 289979 102 : aValIleValArgLysProAsnIleGluTyrCysIleLysGlnValGlnThrAspTrp : 120 ! !!! !:!!!:! !! |||! !|||:!:|||!!.:!!:!!! !|||||| rPheSerMetLysGlySerAlaIleGlyArgCysValLysHisIleGluArgAspTrp 289980 : CTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGG : 290036 121 : LysGlnValGluPheGlnLysAsnArgMetLeuMetLeuLysTyrGlyLysIleGlyA : 140 |||..!:!!... !:!! ! :!!|||:!::!!||||||!:!|||! !! !!!:.!!| LysMetLeuArgAspGluAspHisArgValIleMetLeuArgTyrValThrMetSerA 290037 : AAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCC : 290096 141 : rgAspLeuThrIleTyrSerAlaValPheMetTyrSerAlaGlyIleCysTyrValTh : 159 ||:!!|||! !! ! !!!|||:!!|||:!!|||! !!.!|||:!:! !||| !|| rgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnTh 290097 : GGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACAC : 290153 160 : rIleMetGlnTyrAlaMetGlyMetSerLeuLysAlaAsnAsnArgThrIleArgVal : 178 |:!!!!:! !! ! ! !! !|||:!!!!. ..!||| !||||||||| ! rValIleProLeuPheSerLysLysSerValAsn---GlyAsnValThrIleArgPro 290154 : TGTCATACCGTTGTTCTCGAAGAAGAGCGTGAAC---GGTAACGTGACTATCAGACCT : 290207 179 : LeuValTyrProThrTyrSerGlyPhePheAspAlaGlnLysSerProIleTyrGluI : 198 |||..!|||||| !|||..!! !|||||||||!.!|||||||||||| ||||||| LeuThrTyrProGlyTyrGluGluPhePheAspValGlnLysSerProAlaTyrGluI 290208 : CTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGA : 290267 199 : leValTyrValLeuGlnCysMetCysThrPheValPheAsnSerValThrValGlyCy : 217 |||||!:! !:!!!!.|||:!:! !..!.!.:!! !:!:!!|||:!!!.!.. leValPheCysMetHisCysValTyrValMetIleThrAlaAsnIleThrMetAlaAl 290268 : TCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGC : 290324 218 : sCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGlnIleAspValValIle : 236 .! !.!!|||.!!.!!:!!|||!.!||||||.!!|||||||||||| ! :!! !! aTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThr 290325 : GTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACG : 290381 237 : SerGlnLeuAsnAspLeuValGluGlyLysPheAlaLysLysAsnSerAspProAsnT : 256 !!!!:!|||.!.||||||..!:!! !! !.!. ! !:!!!!..!! !!:! ThrArgLeuGluAspLeuThrLysArgGlyMetLeuLeuGluLysGly---ValSerA 290382 : ACGCGGCTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAGAAGGGA---GTGAGTG : 290438 257 : hrArgLeuMetGluIleValLysHisHisIleArgIleLeuLys : 270 !|||||| !! :!!|||!.. !|||:!:..!||||||||| spArgLeuAlaValValValSerGlyHisValGluIleLeuLys 290439 : ATCGTTTGGCGGTTGTTGTGAGCGGTCACGTGGAGATCTTGAAG : 290482 vulgar: gi|815911896|ref|XP_012241389.1| 7 270 . KQ414889.1 289690 290482 + 344 M 34 102 G 0 9 M 129 387 G 1 0 M 81 243 G 1 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289691 290482 344 + . gene_id 10 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289691 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289691 290482 . + . insertions 9 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289691 290482 344 + . alignment_id 10 ; Query gi|815911896|ref|XP_012241389.1| ; Align 289691 8 102 ; Align 289802 42 387 ; Align 290189 172 243 ; Align 290432 254 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 333 Query range: 13 -> 270 Target range: 208185 -> 208962 14 : AsnThrLysTyrGluGluAspIleAspTyrValThrLysHisAsnLysTrpValLeuA : 33 |||! !!!.|||:!!.!.|||:!:..!!:! !..!:::! ||| !|||..!|||! AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 34 : snSerIleGlyMetTrpPro<-><->ValValAlaGluGlyIleAspLysPheLeuPr : 50 !.! !|||||| |||||| :!!! ! !... !!:!!!!:!!. !! !! ysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHi 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCA : 208300 51 : oLysIleIleIleGlyPheSerAsnLeuValSerLeuPheThrValValGlnCysIle : 69 !! :!!:!!! !! !.!!|||:!!! !:!! ! !|||! !|||:!!! ! ! ! sIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGly 208301 : TATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGC : 208357 70 : LeuHisIleIleLeuGluGluLysAspAlaLeuLeuArgLeuArgLeuLeuGlyLeuA : 89 :!! ! ||||||! !! :!!||| !! ! !!:!|||!:!:!!! !.!! ! MetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaL 208358 : ATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTC : 208417 90 : laCysPheAlaSerIleAsnLeuLeuLysTyrTrpAlaValIleValArgLysProAs : 108 ! !!||| !! !!!: !!! !|||||| ! !:!!! !||||||:!! !:! euSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAs 208418 : TGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGA : 208474 109 : nIleGluTyrCysIleLysGlnValGlnThrAspTrpLysGlnValGluPheGlnLys : 127 !|||..! ! |||:!!:!! ! |||:!!.!!||||||!:!.!.|||||| !:!!:!! pIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGlu 208475 : CATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAG : 208531 128 : AsnArgMetLeuMetLeuLysTyrGlyLysIleGlyArgAspLeuThrIleTyrSerA : 147 :!!|||! !:!!|||||| ! !!!.!!...!!!.!||| ! |||! !:!: !!!! AspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysG 208532 : GACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCG : 208591 148 : laValPheMetTyrSerAlaGlyIleCysTyrValThrIleMetGlnTyrAlaMetGl : 166 .!!.!|||||||||.!!!.. ||| ||| ! !:!!! ! !.!! ! lyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAs 208592 : GAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGA : 208648 167 : yMetSerLeu<->LysAlaAsnAsnArgThrIleArgValLeuValTyrProThrTyr : 184 !! ! !:!! :!!!.!..!||| !||| !||| !||||||||||||..! ! pLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValPro 208649 : CAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCT : 208705 185 : SerGlyPhePheAspAlaGlnLysSerProIleTyrGluIleValTyrValLeuGlnC : 204 !.! !.!!.!.|||!.!!:! ! ||||||:!: !!|||||| !!|||..!:!!|||! LysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnL 208706 : AAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAAT : 208765 205 : ysMetCysThrPheValPheAsnSerValThrValGlyCysCysGlyLeuAlaAlaLe : 223 :!!! !|||||| !:!!!:!:!!|||||||||..!||||||||||||||||| euLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLe 208766 : TGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCT : 208822 224 : uPheValThrHisAlaCysGlyGlnIleAspValValIleSerGlnLeuAsnAspLeu : 242 |.!!!.!! !|||||||||||||||:!:.!.:!!:!!!!:||| !:!!.!. ! ||| uLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeu 208823 : GCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTG : 208879 243 : ValGluGlyLysPheAlaLysLysAsnSerAspProAsnThrArgLeuMetGluIleV : 262 |||!!:|||::! ! ! ! :!!.!.!.!:!! !:!! !|||||| .!.|||| ValAspGlyArg---GluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleV 208880 : GTCGATGGACGG---GAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCG : 208936 263 : alLysHisHisIleArgIleLeuLys : 270 ||:!!!!.|||:!!|||:!::!!||| alGluGlnHisValArgValIleLys 208937 : TGGAGCAGCATGTTCGAGTGATCAAG : 208962 vulgar: gi|815911896|ref|XP_012241389.1| 13 270 . KQ414889.1 208185 208962 + 333 M 26 78 G 0 6 M 130 390 G 0 3 M 77 231 G 1 0 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 208962 333 + . gene_id 11 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208186 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208962 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208186 208962 333 + . alignment_id 11 ; Query gi|815911896|ref|XP_012241389.1| ; Align 208186 14 78 ; Align 208270 40 390 ; Align 208663 170 231 ; Align 208894 248 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 323 Query range: 21 -> 270 Target range: 274380 -> 275136 22 : AspTyrValThrLysHisAsnLysTrpValLeuAsnSerIleGlyMetTrpProValV : 41 |||||| ! !:!! |||::!||| !!|||!!. !!|||||| !||||||:!!! AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuA 274381 : GACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAG : 274438 42 : alAla<-><->GluGlyIleAspLysPheLeuProLysIleIleIleGlyPheSerAs : 58 .!:!! ! !.!!!!:::!.!!||| !! ! ::::::||| ... ! laSerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTy 274439 : CCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctA : 274495 59 : nLeuValSerLeuPheThrValValGlnCysIleLeuHisIleIleLeuGluGluLys : 77 !! ! !!! !|||! !||||||:!!! ! !!|||!!!||||||||||||! !!!::!! rCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGlu 274496 : CTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAA : 274552 78 : AspAlaLeuLeuArgLeuArgLeuLeuGlyLeuAlaCysPheAlaSerIleAsnLeuL : 97 ..! !! !|||!:!|||!:!|||||||||! ! ! !! ! !! !|||... !: SerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyI 274553 : AGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAA : 274612 98 : euLysTyrTrpAlaValIleValArgLysProAsnIleGluTyrCysIleLysGlnVa : 116 !!!!.||| .!!:!!:!::!!|||!.. !.!.|||... !|||:!::!!!!.:! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 274613 : TTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACAT : 274669 117 : lGlnThrAspTrpLysGlnValGluPheGlnLysAsnArgMetLeuMetLeuLysTyr : 135 !||||||||||||!:! ||| ! !:!!:!!!:!...:!!||||||||| !! tGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsn 274670 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAAC : 274726 136 : GlyLysIleGlyArgAspLeuThrIleTyrSerAlaValPheMetTyrSerAlaGlyI : 155 !.!|||||||||||| !!:!!.!!|||!:!!!!|||!.!|||||| ! !!!!.!! !: AlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 274727 : GCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTC : 274786 156 : leCysTyrValThrIleMetGlnTyrAlaMetGlyMetSerLeuLysAlaAsn<->As : 173 !!|||||| !..!|||! !!:!.!!||| !! !! ! !!.!||| !. euCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluTh 274787 : TCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGAC : 274843 174 : nArgThrIleArgValLeuValTyrProThrTyrSerGlyPhePheAspAlaGlnLys : 192 !||||||:!:!.!:!!||| !! ! !.!!|||!.! !.!! !!! !.!.!.! ! rArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThr 274844 : CAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACG : 274900 193 : SerProIleTyrGluIleValTyrValLeuGlnCysMetCysThrPheValPheAsnS : 212 ||||||! !!||||||||| !!.!! !|||! !:!!! !|||:!! ! |||| SerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnS 274901 : AGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATT : 274960 213 : erValThrValGlyCysCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGl : 231 || !.!!||||||...! !.!!|||||||||:!!|||!.!.!!||||||! !||||| erSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGl 274961 : CGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCA : 275017 232 : nIleAspValValIleSerGlnLeuAsnAspLeuValGluGlyLysPheAlaLysLys : 250 |:!:..!|||:!!!!:! ! !:!!!.!!!:!!!|||.!. !... ! :::... nLeuSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsn 275018 : GTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaat : 275074 251 : AsnSerAspProAsnThrArgLeuMetGluIleValLysHisHisIleArgIleLeuL : 270 ...::: ::!..!:!! ! !:!!|||:!!||||||:!:|||:!!|||! LysAsnValTyrPheSerGluIleGlyValValValGluHisHisLeuArgValLeuA 275075 : aaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTCA : 275134 271 : ys : 270 :! rg 275135 : GG : 275136 vulgar: gi|815911896|ref|XP_012241389.1| 21 270 . KQ414889.1 274380 275136 + 323 M 21 63 G 0 6 M 130 390 G 0 3 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274381 275136 323 + . gene_id 12 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274381 275136 . + . KQ414889.1 exonerate:protein2genome:local exon 274381 275136 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274381 275136 323 + . alignment_id 12 ; Query gi|815911896|ref|XP_012241389.1| ; Align 274381 22 63 ; Align 274450 43 390 ; Align 274843 173 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 319 Query range: 21 -> 270 Target range: 266634 -> 267390 22 : AspTyrValThrLysHisAsnLysTrpValLeuAsnSerIleGlyMetTrpProValV : 41 |||||| ! !:!! |||::!||| !!|||!!. !!|||||| |||||| !: AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProL 266635 : GATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGT : 266692 42 : alAla<-><->GluGlyIleAspLysPheLeuProLysIleIleIleGlyPheSerAs : 58 !!:!! ... !:!!!!:::!.!!:!! !! ! !:!:|||! !.!!!!! ! euSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266693 : TGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 59 : nLeuValSerLeuPheThrValValGlnCysIleLeuHisIleIleLeuGluGluLys : 77 !! ! !! !||||||||||||:!!! |||:!:!!!|||:!!:!!||||||!!::!! rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 78 : AspAlaLeuLeuArgLeuArgLeuLeuGlyLeuAlaCysPheAlaSerIleAsnLeuL : 97 ..! !! ! !!:!:!!!:!:!!!!!|||! ! ! !! ! !! !:!!... !: SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 98 : euLysTyrTrpAlaValIleValArgLysProAsnIleGluTyrCysIleLysGlnVa : 116 !!!!.||| .!!:!!:!::!!|||!.. !.!.|||... !|||:!!:!!!!.:! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 117 : lGlnThrAspTrpLysGlnValGluPheGlnLysAsnArgMetLeuMetLeuLysTyr : 135 !||||||||||||!:! ||| ! !:!!:!!!:!..!:!!||||||||| !! tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 136 : GlyLysIleGlyArgAspLeuThrIleTyrSerAlaValPheMetTyrSerAlaGlyI : 155 !.!!:!||||||||| !!:!!.!!|||!:!!!!|||!.!|||||| ! !!!!.!! !: AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 156 : leCysTyrValThrIleMetGlnTyrAlaMet<->GlyMetSerLeuLysAlaAsnAs : 173 !! !!||| !..!|||! ! !!:!.!!||| !:!!..!:!! !.!.!. euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 174 : nArgThrIleArgValLeuValTyrProThrTyrSerGlyPhePheAspAlaGlnLys : 192 !|||! !:!!!.!:!!||| !! ! !!..!|||!.! !.!..!!! !.!.!.! rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 193 : SerProIleTyrGluIleValTyrValLeuGlnCysMetCysThrPheValPheAsnS : 212 ||||||! !!||||||||| !|||! !|||! !:!:! !|||:!! ! |||| SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 213 : erValThrValGlyCysCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGl : 231 || !..!||||||..!! !.!!|||||||||:!!|||!.!.!!|||||||||||||| erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 232 : nIleAspValValIleSerGlnLeuAsnAspLeuValGluGlyLysPheAlaLysLys : 250 |:!:..!|||:!!!!:! ! !:!!!!.!!:!!!|||.!. !!... ! !!..!!. nLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsn 267272 : GCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAAT : 267328 251 : AsnSerAspProAsnThrArgLeuMetGluIleValLysHisHisIleArgIleLeuL : 270 !!.!:!! ! ! ! !!:!:!! ! !:!!|||:!!||||||:!:|||:!!|||! LysAsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeuA 267329 : AAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGA : 267388 271 : ys : 270 :! rg 267389 : GG : 267390 vulgar: gi|815911896|ref|XP_012241389.1| 21 270 . KQ414889.1 266634 267390 + 319 M 21 63 G 0 6 M 123 369 G 0 3 M 105 315 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266635 267390 319 + . gene_id 13 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266635 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266635 267390 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266635 267390 319 + . alignment_id 13 ; Query gi|815911896|ref|XP_012241389.1| ; Align 266635 22 63 ; Align 266704 43 369 ; Align 267076 166 315 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 313 Query range: 279 -> 405 Target range: 280019 -> 280542 280 : GlnGluValCysPhePheGluPheValGlySerThrPheValIleCysLeuLeuGluT : 299 .!.!!::!!|||!:!|||.!..!!||| !:!!! !.!!!.!.!! !:!!! !..!! AspAspLeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerL 280020 : GACGACTTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGT : 280077 300 : yrTyrCysIleThrAspTrpGlnGlnAsnAsnLysIleGlyLeuThrThrTyrSerMe : 318 ! !.!! !!!:|||:!!||||||:!! |||||| ! !||||||! !|| euSerValPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMe 280078 : TGTCAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAAT : 280134 319 : tLeuLeuValSerLeuThrPheAsnMetPheLeuLeuCysTyrIleGlyAsnLeuLeu : 337 |!!!|||:!!|||||||||||||||:!:|||:!!|||||||||||||||.!.:!!||| tPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeu 280135 : GTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTC : 280191 338 : IleGluLys >>>> Target Intron 1 >>>> SerThrSerValGlyIleSe : 347 !|||::: 74 bp !!! !!.!||||||:!:|| SerGluGln++ ++CysLeuLysValGlyValSe 280192 : TCCGAACaggt.........................agTGCTTAAAAGTCGGCGTGTC : 280295 348 : rCysTyrMetIleAspTrpTyrArgLeuProValLysThrValGlnAspLeuIleLeu : 366 | !|||||||||||||||||||||||||||! !|||! !!.!|||! !||||||||| rThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeu 280296 : AACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTG : 280352 367 : IleIleAlaMetSerAsnSerProAlaLysIleSerAlaGlyArgIlePheLeuLeuS : 386 |||.!!|||:!!||||||||| !! !|||:!!!!!||||||!:!|||.!! !|||| IlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuS 280353 : ATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCT : 280412 387 : erLeuThrThrPheGlyAsn >>>> Target Intron 2 >>>> ValLeuLys : 395 |||||!:!!:!||| !!!:! 71 bp ||||||||| erLeuSerSerPheCysSer++ ++ValLeuLys 280413 : CTTTAAGCAGCTTCTGCAGCgt.........................agGTGTTAAAA : 280510 396 : ThrSerPheAlaTyrLeuAsnPheValArg : 405 |||:!!||||||||||||!:!!!.:!!||| ThrAlaPheAlaTyrLeuSerLeuLeuArg 280511 : ACGGCATTCGCATATCTGAGCTTATTACGT : 280542 vulgar: gi|815911896|ref|XP_012241389.1| 279 405 . KQ414889.1 280019 280542 + 313 M 61 183 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280020 280542 313 + . gene_id 14 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280020 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280020 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280542 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280542 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280020 280542 313 + . alignment_id 14 ; Query gi|815911896|ref|XP_012241389.1| ; Align 280020 280 183 ; Align 280277 341 156 ; Align 280504 393 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 309 Query range: 21 -> 279 Target range: 236849 -> 237626 22 : AspTyrValThrLysHisAsnLysTrpValLeuAsnSerIleGlyMetTrpProValV : 41 |||||| ! !:!! |||::!|||!.!:!!!!.|||||||||! |||||| ! AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnP 236850 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGT : 236907 42 : alAlaGluGlyIleAspLysPheLeuProLysIleIleIleGlyPheSerAsnLeuVa : 60 !!:!!..!..!:!!!!:!:! !:!! !!::!|||:!!! !! !.!!!!! !! !!. heSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAl 236908 : TCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGC : 236964 61 : lSerLeuPheThrValValGlnCysIleLeuHisIleIleLeuGluGluLysAspAla : 79 !! !||||||:!!:!!:!!! ||| ||||||:!!!!:||||||:!! ! ! ! aIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPhe 236965 : AATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTC : 237021 80 : LeuLeuArgLeuArgLeuLeuGlyLeuAlaCysPheAlaSerIleAsnLeuLeuLysT : 99 ! ! !!:!:!!!:!:!!||||||! ! ! !! ! ! !.!! !:!!:!!!..| TyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerT 237022 : TACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTT : 237081 100 : yrTrpAlaValIleValArgLysProAsnIleGluTyrCysIleLysGlnValGlnTh : 118 || !:!!:!::!!|||::: !!.!|||...:!!! !.!!!!.!!.:!!:!!|| yrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluTh 237082 : ACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGAC : 237138 119 : rAspTrpLysGlnValGluPheGlnLysAsnArgMetLeuMetLeuLysTyrGlyLys : 137 |||||||!:! !..! ::::::...::: :::||||||||||||!.!||| rAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLys 237139 : CGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAA : 237195 138 : IleGlyArgAspLeuThrIleTyrSerAlaValPheMetTyrSerAlaGlyIleCysT : 157 .!!.!!||| !! !.!!|||! !!!!.!!:!!|||!!::!!.!!!.! !:!! ! | PheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyT 237196 : TTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGAT : 237255 158 : yrValThrIleMetGlnTyrAlaMetGlyMetSerLeuLysAlaAsnAsnArgThrIl : 176 || !..!!!:! !! !.!!! ! !:!: !:!! !.!|||!!.! !||||| yrCysValMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIl 237256 : ATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGAT : 237312 177 : e<->ArgValLeuValTyrProThrTyrSerGlyPhePheAspAlaGlnLysSerPro : 194 | ||||||||| !! |||! !|||!.!|||.!!.!! !.!.!.! !!:! !! eLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThr 237313 : CTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACT : 237369 195 : IleTyrGluIleValTyrValLeuGlnCysMetCysThrPheValPheAsnSerValT : 214 !!: !!!!:|||||| !:!!! !|||! !:!:! ! !|||:!! |||!:! !. MetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerA 237370 : ATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTG : 237429 215 : hrValGlyCysCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGlnIleAs : 233 !!:!!.!! ! .!!|||.!!::! !.!...!:!!||||||! !||||||:!:.. laIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSe 237430 : CGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAG : 237486 234 : pValValIleSerGlnLeuAsnAspLeuValGluGlyLysPheAlaLysLysAsnSer : 252 !||||||!!:! !..!:!!.!.|||!!!|||...! ! ! !!:! !!!...! rValValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAsp 237487 : CGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGAC : 237543 253 : AspProAsnThrArgLeuMetGluIleValLysHisHisIleArgIleLeuLysPheS : 272 |||! ! ! !..!:!! ! !||||||:!!.!.|||:!:|||:!:||||||! AspHisPheAspGluIleProThrIleValGluGluHisLeuArgValLeuLys***V 237544 : GATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAG : 237603 273 : erAlaValIleGluThrValLeu : 279 !..!:!!:!:!!: !:!!||| alCysLeuLeuAspLeuIleLeu 237604 : TATGTTTGTTGGATTTGATTTTG : 237626 vulgar: gi|815911896|ref|XP_012241389.1| 21 279 . KQ414889.1 236849 237626 + 309 M 155 465 G 0 3 M 103 309 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236850 237626 309 + . gene_id 15 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236850 237626 . + . KQ414889.1 exonerate:protein2genome:local exon 236850 237626 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 236850 237626 309 + . alignment_id 15 ; Query gi|815911896|ref|XP_012241389.1| ; Align 236850 22 465 ; Align 237318 177 309 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 306 Query range: 21 -> 270 Target range: 262846 -> 263602 22 : AspTyrValThrLysHisAsnLysTrpValLeuAsnSerIleGlyMetTrpProValV : 41 |||||| ! !:!! |||::!|||:!!|||!!. !!|||||| ||||||:!! AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 42 : alAla<-><->GluGlyIleAspLysPheLeuProLysIleIleIleGlyPheSerAs : 58 !||| ..! !!!!:!!:::!.!!:!! ! :!!:!!|||! ! !!!!! ! erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 59 : nLeuValSerLeuPheThrValValGlnCysIleLeuHisIleIleLeuGluGluLys : 77 !! !:!!! !|||! !||||||:!!! ! !||||||||||||:!!||||||! :!! rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 78 : AspAlaLeuLeuArgLeuArgLeuLeuGlyLeuAlaCysPheAlaSerIleAsnLeuL : 97 :!! !! !:!!!:!|||!:!:!!||||||! ! ! !! !! !:!!..!:!!: AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 98 : euLysTyrTrpAlaValIleValArgLysProAsnIleGluTyrCysIleLysGlnVa : 116 !!!!.||| !:!!:!::!!!.!!.. !:!!|||:!! !|||:!::!!!!.|| leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 117 : lGlnThrAspTrpLysGlnValGluPheGlnLysAsnArgMetLeuMetLeuLysTyr : 135 |||| !|||||| ||| !:!!:!!!:! :!!||||||||| !! lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 136 : GlyLysIleGlyArgAspLeuThrIleTyrSerAlaValPheMetTyrSerAlaGlyI : 155 !.!||| !|||||| !!:!!.!! !! !!!!|||:!!|||||| ! !!!::! !! AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 156 : leCysTyrValThrIleMetGlnTyrAlaMetGlyMetSerLeuLysAlaAsn<->As : 173 !:||| ! ! !:!!! !!:!.!!! !:!!! ! ! ! !.!||| !. etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 174 : nArgThrIleArgValLeuValTyrProThrTyrSerGlyPhePheAspAlaGlnLys : 192 !|||! !:!!|||:!!||| !! !|||..!|||!.!! !.!!.!! !.!.!.! ! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 193 : SerProIleTyrGluIleValTyrValLeuGlnCysMetCysThrPheValPheAsnS : 212 !:!|||! !!|||||| !! !!.! !|||! !:!!! !|||:!! !!!.!: AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 213 : erValThrValGlyCysCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGl : 231 !!..!|||||||||..!! !|||:!!.!!|||:!!|||!.! !|||||||||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 232 : nIleAspValValIleSerGlnLeuAsnAspLeuValGluGlyLysPheAlaLysLys : 250 |:!::!!|||:!!!!:||| !:!!!..!!:!!!|||.!. !... ! !:!!!!. nLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsn 263484 : GTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAAT : 263540 251 : AsnSerAspProAsnThrArgLeuMetGluIleValLysHisHisIleArgIleLeuL : 270 !!.!:! ! ! !|||..!:!! ! !||||||:!!||||||:!:|||:!!|||! LysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeuA 263541 : AAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTGA : 263600 271 : ys : 270 :! rg 263601 : GG : 263602 vulgar: gi|815911896|ref|XP_012241389.1| 21 270 . KQ414889.1 262846 263602 + 306 M 21 63 G 0 6 M 130 390 G 0 3 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 263602 306 + . gene_id 16 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262847 263602 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263602 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262847 263602 306 + . alignment_id 16 ; Query gi|815911896|ref|XP_012241389.1| ; Align 262847 22 63 ; Align 262916 43 390 ; Align 263309 173 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 296 Query range: 12 -> 271 Target range: 212842 -> 213625 13 : GlnAsnThrLysTyrGluGluAspIleAspTyrValThrLysHisAsnLysTrpValL : 32 :!!:!! !! ||||||:!! :::::: ! |||:::|||:!!| GluAspCysThrTyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuL 212843 : GAAGACTGTACCTACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTT : 212900 33 : euAsnSerIleGlyMetTrpPro<-><->ValValAlaGluGlyIleAspLysPheLe : 49 ||!!. !!! |||:!!|||||| ! !!.!..! !|||!!:||| !:! euLysProThrGlyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIl 212901 : TGAAACCAACGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACAT : 212957 50 : uProLysIleIleIleGlyPheSerAsnLeuValSerLeuPheThrValValGlnCys : 68 ! !!::!:!::!!! ! ! !!!!! !! !:!!! ! !!:! !|||:!!! !||| eAlaArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCys 212958 : CGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGC : 213014 69 : IleLeuHisIleIleLeuGluGluLysAspAlaLeuLeuArgLeuArgLeuLeuGlyL : 88 ! !|||:!!:!:.!!|||!!:! !:::::: ... ...:!!..!|||!!!|||: SerLeuTyrValPheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyI 213015 : AGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCA : 213074 89 : euAlaCysPheAlaSerIleAsnLeuLeuLysTyrTrpAlaValIleValArgLysPr : 107 !! !...|||..! ! ! |||! !|||||| :!!:!!|||:!!!.! lePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAs 213075 : TTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGA : 213131 108 : oAsnIleGluTyrCysIleLysGlnValGlnThrAspTrpLysGlnValGluPheGln : 126 !:!!|||... |||:!!:!!!!.:!!:!! !|||||||||.!.:!! ! !:!! pAspIleArgThrCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGlu 213132 : CGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAG : 213188 127 : LysAsnArgMetLeuMetLeuLysTyrGlyLysIleGlyArgAspLeuThrIleTyrS : 146 :!!:!!!:! :!!||| ! ! !!!.!!...!!|||!:! :!!..!! ! !! GluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleC 213189 : GAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTT : 213248 147 : erAlaValPheMetTyrSerAlaGlyIleCysTyrValThrIleMetGlnTyr<->Al : 164 !!||| !!|||||||||!!!!.! !! ! !||| !! !:!!:!:! ! ! || ysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAl 213249 : GTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGC : 213305 165 : aMetGlyMetSerLeuLysAlaAsnAsnArgThrIleArgValLeuValTyrProThr : 183 | !||| ! !:!!! ! !||| !|||.!!||| !:!!||| !|||..! aAspLysMetValAlaGluAspLeuAsnValThrPheArgGlnMetValValProVal 213306 : GGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTC : 213362 184 : TyrSerGlyPhePheAspAlaGlnLysSerProIleTyrGluIleValTyrValLeuG : 203 ! !!! !.!! !!|||!.!!:! ! ||||||:!: !!|||||| !!!:!:!!:!!| SerArgPheIleValAspValArgTyrSerProValAsnGluIlePhePheLeuIleG 213363 : TCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTC : 213422 204 : lnCysMetCysThrPheValPheAsnSerValThrValGlyCysCysGlyLeuAlaAl : 222 || !!!:..! ! ! :!!.!!:!!:!!:!!.!!|||! !..!|||.!!|||||||| lnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAl 213423 : AGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGC : 213479 223 : aLeuPheValThrHisAlaCysGlyGlnIleAspValValIleSerGlnLeuAsnAsp : 241 |:!!|||!.!..!|||||||||||||||!!:! !:!!:!!!!:||| !|||.!. !! aValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHis 213480 : TGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACAT : 213536 242 : LeuValGluGlyLysPheAlaLysLysAsnSerAspProAsnThrArgLeuMetGluI : 261 |||:!!!!:|||!:! ! ! ! ! !!:!!.!:!! !:!! !|||:!! !! | LeuIleAspGlyArg---GluAspMetSerLysAsnValAspAspArgIleAlaValI 213537 : TTGATAGACGGTAGA---GAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCA : 213593 262 : leValLysHisHisIleArgIleLeuLysPhe : 271 |||||!!.!!.|||:!:||||||||||||!:: leValAsnGlnHisValArgIleLeuLysTrp 213594 : TCGTGAACCAGCATGTGCGGATACTGAAGTGG : 213625 vulgar: gi|815911896|ref|XP_012241389.1| 12 271 . KQ414889.1 212842 213625 + 296 M 27 81 G 0 6 M 124 372 G 0 3 M 83 249 G 1 0 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212843 213625 296 + . gene_id 17 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212843 213625 . + . KQ414889.1 exonerate:protein2genome:local exon 212843 213625 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212843 213625 296 + . alignment_id 17 ; Query gi|815911896|ref|XP_012241389.1| ; Align 212843 13 81 ; Align 212930 40 372 ; Align 213305 164 249 ; Align 213554 248 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 286 Query range: 12 -> 299 Target range: 194141 -> 196381 13 : GlnAsnThrLysTyrGluGluAspIleAspTyrValThrLysHisAsnLysTrpValL : 32 !::|||..!!!.|||:!! !|||! !!!:|||!.!..!::! ||| !:!!| ArgAsnValAsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuL 194142 : CGCAACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTC : 194199 33 : euAsnSerIleGlyMetTrpProValValAlaGluGlyIleAspLysPheLeuProLy : 51 ||!.. !!||||||!!:|||||| !! !! !... ! !|||!:! !!! !! ! euThrProIleGlyIleTrpProArgGluAspSerLeuArgAspArgValArgLeuPh 194200 : TAACACCGATCGGTATCTGGCCAAGGGAGGATTCTCTTCGCGACAGAGTCCGACTGTT : 194256 52 : sIleIleIleGlyPheSerAsnLeuValSerLeuPheThrValValGlnCysIleLeu : 70 ! !! !||| ! ! ! !:!!! !! !||| !:!!|||! !:!::!! eAlaGlnThrGlyValValPheAlaLeuMetCysPheLeuLeuValProHisValIle 194257 : CGCTCAAACTGGCGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATC : 194313 71 : HisIleIleLeuGluGluLysAspAlaLeuLeuArgLeuArgLeuLeuGlyLeuAlaC : 90 :!!! ! !!!!!!: :!!||| ! ! ! !:!!!:!:!!:!!!.! ! ! TyrThrTyrPheAspCysGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnV 194314 : TACACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAG : 194373 91 : ysPheAlaSerIleAsnLeuLeuLysTyrTrpAlaValIleValArgLysProAsnIl : 109 |||::! !:!: :!!:!!|||!:!|||.!!:!!||||||!.!!:! !.!.|| alPheSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnArgLysGluIl 194374 : TGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGAT : 194430 110 : eGluTyrCysIleLysGlnValGlnThrAspTrpLysGlnValGluPheGlnLysAsn : 128 |..!!:!|||:!: !:!!:!!:!!|||.!.!::!:!.!.||||||! !:!!:!!:!! eArgPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCysGluGluAsp 194431 : CAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGAT : 194487 129 : ArgMetLeuMetLeuLysTyrGlyLysIleGlyArgAspLeuThrIleTyrSerAlaV : 148 |||..!:!!||| !!!.! !!.!|||||||||||| !!!!|||! ! ! ! !! ArgGlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuG 194488 : CGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGG : 194547 149 : alPheMetTyrSerAlaGlyIleCysTyrValThrIleMetGlnTyrAlaMetGlyMe : 167 !.!! |||.!!!.!!.!:!: ||| !! !|||:!:! ! !! !! lyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluAr 194548 : GACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAG : 194604 168 : tSerLeuLysAlaAsnAsnArgThrIleArgValLeuValTyrProThrTyrSerGly : 186 !! !:!!|||! !:!!|||!!!||| ! ! !||| !||| !!:! !!! !! ! gIleValLysGluAspAsnSerThrGlnIleProLeuProTyrLeuSerAsnTyrVal 194605 : GATTGTCAAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTT : 194661 187 : PhePheAspAlaGlnLysSerProIleTyrGluIleValTyrValLeuGlnCysMetC : 206 ||||||! !:!! ! ||||||||||||||||||..!!:!|||! !||| :!! PhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerGlnIleLeuI 194662 : TTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGA : 194721 207 : ysThrPheValPheAsnSerValThrValGlyCysCysGlyLeuAlaAlaLeuPheVa : 225 !!:! !:!!.!. |||..!!.! !||| !! !.!!|||!.!||| !.!!:! leSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIl 194722 : TTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTAT : 194778 226 : lThrHisAlaCysGlyGlnIleAspValValIleSerGlnLeuAsnAspLeuValGlu : 244 !! !|||..!|||||| !.!!!!:|||..!! !!!!::!:!!.!. !:!! eMetHisCysCysGlyLeuPheGluValThrSerArgArgMetGluThrIle------ 194779 : TATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGATGGAGACTATT------ : 194832 245 : GlyLysPheAlaLysLysAsnSerAspProAsnThrArgLeuMetGluIleValLysH : 264 ! !!.! ! ...!.!||| !... !||||||! !!!::!!|||:!! ------SerValProThrGlyLysAspIleArgGlyArgLeuArgAspValValGlnP 194833 : ------TCTGTGCCCACTGGGAAGGATATTCGGGGTAGACTTAGGGACGTCGTTCAGT : 194883 265 : isHisIleArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheSe : 272 !|||:!:!:! !:!!{||} 1391 bp {|}|||:! heHisLeuLysAlaIle{Ly}++ ++{s}PheAl 194884 : TTCATCTGAAAGCAATT{AA}gt.........................ag{a}tTCGC : 196298 273 : rAlaValIleGluThrValLeuGlnGluValCysPhePheGluPheValGlySerThr : 291 !! !:!!||||||! !!.!|||.!. |||! !.!.! |||.!.:!!|||!!!||| aGluMetIleGluLysAlaLeuAsnIleValPheLeuSerGluMetLeuGlyCysThr 196299 : TGAAATGATCGAGAAAGCACTGAACATCGTGTTTCTATCAGAGATGCTTGGCTGCACT : 196355 292 : PheValIleCysLeuLeuGluTyr : 299 .!!:!!||||||!!!||||||||| IleIleIleCysPheLeuGluTyr 196356 : ATCATCATATGTTTCCTGGAATAC : 196381 vulgar: gi|815911896|ref|XP_012241389.1| 12 299 . KQ414889.1 194141 196381 + 286 M 230 690 G 4 0 M 23 69 S 0 2 5 0 2 I 0 1387 3 0 2 S 1 1 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194142 196381 286 + . gene_id 18 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 194142 194902 . + . KQ414889.1 exonerate:protein2genome:local exon 194142 194902 . + . insertions 0 ; deletions 4 KQ414889.1 exonerate:protein2genome:local splice5 194903 194904 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 194903 196293 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 196292 196293 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 196294 196381 . + . KQ414889.1 exonerate:protein2genome:local exon 196294 196381 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194142 196381 286 + . alignment_id 18 ; Query gi|815911896|ref|XP_012241389.1| ; Align 194142 13 690 ; Align 194832 247 69 ; Align 196295 271 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 273 Query range: 279 -> 406 Target range: 286806 -> 287261 280 : GlnGluValCysPhePheGluPheValGlySerThrPheValIleCysLeuLeuGluT : 299 .!.!!::!!|||!:!!:!.!. !||| !:!!! !.!!!.!.!! !:!!! !..!! AspAspLeuCysTyrTyrHisThrValMetAlaIleIleAlaPheValMetTyrSerL 286807 : GACGACTTGTGTTATTACCATACTGTAATGGCAATAATTGCATTCGTCATGTACTCGT : 286864 300 : yrTyrCysIleThrAspTrpGlnGlnAsnAsnLysIleGlyLeuThrThrTyrSerMe : 318 ! !.!! !!!:|||:!!|||!:!.!.! |||||| !! !||||||!!!! euSerValPhe***GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysTh 286865 : TGTCAGTTTTCTAGGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCAC : 286921 319 : tLeuLeuValSerLeuThrPheAsnMetPheLeuLeuCysTyrIleGlyAsnLeuLeu : 337 !||||||||||||!!!|||||||||:!:|||:!!|||||||||||||||.!.:!!||| rLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeu 286922 : GTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTC : 286978 338 : IleGluLys >>>> Target Intron 1 >>>> SerThrSerValGlyIleSe : 347 !|||::: 74 bp !! !!.!||||||:!:|| SerGluGln++ ++CysLeuLysValGlyLeuSe 286979 : TCCGAACaggt.........................agtGCTTAAAAGTCGGCTTGTC : 287082 348 : rCysTyrMetIleAspTrpTyrArgLeuProValLysThrValGlnAspLeuIleLeu : 366 | !|||||||||||||||||||||||||||! !||||||!.!|||! !||||||||| rThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeu 287083 : AACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTG : 287139 367 : IleIleAlaMetSerAsnSerProAlaLysIleSerAlaGlyArgIlePheLeuLeuS : 386 |||.!!|||:!!||||||||| !! !|||:!!!!!||||||!:!|||.!! !|||| IlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuS 287140 : ATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCT : 287199 387 : erLeuThrThrPheGlyAsnValLeuLysThrSerPheAlaTyrLeuAsnPheValAr : 405 |||||!:!!:!||| !!!:!||| !! ! !!:!!!.:!!|||! !:!!!!. erLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeuTyrAs 287200 : CTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTGTacga : 287256 406 : gAsn : 406 ||| pAsn 287257 : taat : 287261 vulgar: gi|815911896|ref|XP_012241389.1| 279 406 . KQ414889.1 286806 287261 + 273 M 61 183 5 0 2 I 0 70 3 0 2 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286807 287261 273 + . gene_id 19 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286807 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286807 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287261 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287261 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286807 287261 273 + . alignment_id 19 ; Query gi|815911896|ref|XP_012241389.1| ; Align 286807 280 183 ; Align 287064 341 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 268 Query range: 167 -> 302 Target range: 300174 -> 300713 168 : SerLeuLysAlaAsnAsnArgThrIleArgValLeuValTyrProThrTyrSerGlyP : 187 !!!! !||| !.!.||| !||| !!:! !|||!.!|||||| !|||..! !!| ThrTyrLysArgGluAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpP 300175 : ACTTACAAAAGGGAGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGT : 300232 188 : hePheAspAlaGlnLysSerProIleTyrGluIleValTyrValLeuGlnCysMetCy : 206 ||.!!|||.!!|||! ||||||! !||||||||||||::: ......|||.!... heIleAspThrGlnThrSerProThrTyrGluIleValPhePhePheHisCysPheAl 300233 : TTATCGATACACAAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGC : 300289 207 : sThrPheValPheAsnSerValThrValGlyCysCysGlyLeuAlaAlaLeuPheVal : 225 ..!!.!.:!!.!. !!!:!||||||..!!.!...! !.!!|||||||||:!!|||||| aAlaMetIleMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheVal 300290 : AGCGATGATCATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTC : 300346 226 : ThrHisAlaCysGlyGlnIleAspValValIleSerGlnLeuAsnAspLeuValGluG : 245 |||||| !||||||||||||.!.:!! !!!::!!::!|||.!.|||||||||||| ThrHisIleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGlu- 300347 : ACTCATATCTGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAG- : 300406 246 : lyLysPheAlaLysLysAsnSerAspProAsnThrArgLeuMetGluIleValLysHi : 264 !:! !.!:!!|||:!!..!! !|||:!! !! |||:!:! ||||||::! ! --ArgThrGlyGluLysAspAspGlyProAspPro---LeuValValIleValArgAs 300407 : --AGGACGGGAGAGAAGGACGACGGTCCTGATCCT---TTGGTCGTTATCGTTCGAGA : 300457 265 : sHisIleArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheSer : 272 !|||:!:!:!:!!|||{!:} 140 bp {!}|||:!! pHisValLysValLeu{Ar}++ ++{g}PheAla 300458 : TCACGTGAAGGTTTTA{AG}gt.........................ag{A}TTTGCA : 300621 273 : AlaValIleGluThrValLeuGlnGluValCysPhePheGluPheValGlySerThrP : 292 ! !:!!||| !..!|||!::!!: !!|||!!. ! |||.!! !!! !||||||. LysAsnValGluGluThrLeuArgAspPheCysLeuValGluIlePheGluSerThrL 300622 : AAGAACGTTGAGGAAACTTTGCGTGACTTCTGCTTAGTGGAAATCTTCGAGTCCACGC : 300681 293 : heValIleCysLeuLeuGluTyrTyrCysIle : 302 !.:!!:!:|||||||||||||||||||||:!: euIleLeuCysLeuLeuGluTyrTyrCysLeu 300682 : TGATTTTGTGTTTGCTCGAATACTACTGTTTG : 300713 vulgar: gi|815911896|ref|XP_012241389.1| 167 302 . KQ414889.1 300174 300713 + 268 M 77 231 G 1 0 M 11 33 G 1 0 M 12 36 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300175 300713 268 + . gene_id 20 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300175 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300175 300476 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 300616 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300615 300616 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300617 300713 . + . KQ414889.1 exonerate:protein2genome:local exon 300617 300713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300175 300713 268 + . alignment_id 20 ; Query gi|815911896|ref|XP_012241389.1| ; Align 300175 168 231 ; Align 300406 246 33 ; Align 300439 258 36 ; Align 300618 271 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 233 Query range: 303 -> 407 Target range: 272836 -> 273299 304 : AspTrpGlnGlnAsnAsnLysIleGlyLeuThrThrTyrSerMetLeuLeuValSerL : 323 :!:||| .!.:!!:!! .!!||||||||||||! !|||:!!|||:!!|||: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 324 : euThrPheAsnMetPheLeuLeuCysTyrIleGlyAsnLeuLeuIleGluLys >>> : 341 !:|||||||||:::|||:::::!||||||||||||.!.:!!|||! |||!:! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 342 : > Target Intron 1 >>>> SerThrSerValGlyIleSerCysTyrMetIleA : 352 70 bp ...:::||| ! !||||||! : ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 353 : spTrpTyrArgLeuProValLysThrValGlnAspLeuIleLeuIleIleAlaMetSe : 371 !!|||||| !||||||! !||| !:!!! ||||||||||||||||||:!!! !! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 372 : rAsnSerProAlaLysIleSerAlaGlyArgIlePheLeuLeuSerLeuThrThrPhe : 390 !!:! ! ! !||||||!!!|||||||||||| !!! !:!!|||:!! !|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 391 : GlyAsn >>>> Target Intron 2 >>>> ValLeuLysThrSerPheAlaTy : 400 |||:!! 81 bp |||:!!|||!:!:!!|||||||| GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 401 : rLeuAsnPheValArgAsnThr : 407 |||||||.!.:!!|||.!.||| rLeuAsnMetLeuArgGlnThr 273277 : CTTAAATATGCTACGACAAACG : 273299 vulgar: gi|815911896|ref|XP_012241389.1| 303 407 . KQ414889.1 272836 273299 + 233 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273299 233 + . gene_id 21 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273299 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273299 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273299 233 + . alignment_id 21 ; Query gi|815911896|ref|XP_012241389.1| ; Align 272837 304 111 ; Align 273018 341 156 ; Align 273255 393 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 212 Query range: 300 -> 404 Target range: 244432 -> 244939 301 : CysIleThrAspTrpGlnGlnAsnAsnLysIleGlyLeuThrThrTyrSerMetLeuL : 320 |||... !!!:||| !:!!!:!:!! ! ! !|||! !||||||! !!!: !| CysPhe***GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheIleAlaL 244433 : tgtttctaGGAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTATAGCAC : 244490 321 : euValSerLeuThrPheAsnMetPheLeuLeuCysTyrIleGlyAsnLeuLeuIleGl : 339 |||||:!!:!!..!! !|||! |||:!!||||||||||||.!!:!! !|||! !|| euValAlaIleValSerAsnThrPheIleLeuCysTyrIleSerAspArgLeuThrGl 244491 : TCGTTGCTATTGTTTCTAATACATTTATACTCTGTTATATCAGCGACAGGCTGACAGA : 244547 340 : uLys >>>> Target Intron 1 >>>> SerThrSerValGlyIleSerCysT : 349 |:!! 106 bp !!! !!.!|||||| ! ! !| uGln++ ++CysLeuLysValGlyGluValValT 244548 : ACAGgt.........................agTGCTTGAAAGTTGGTGAAGTGGTTT : 244683 350 : yrMetIleAspTrpTyrArgLeuProValLysThrValGlnAspLeuIleLeuIleIl : 368 |||||! !||||||||| !|||||| !!:!! !:!!! ||||||||||||||||| yrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIl 244684 : ACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCAT : 244740 369 : eAlaMetSerAsnSerProAlaLysIleSerAlaGlyArgIlePheLeuLeuSerLeu : 387 | ! ||||||! ! !!.!:!!|||!!!||||||!:!:!!!!.! !:!!|||||| eLysArgSerAsnMetValValGluIleThrAlaGlyLysValLeuHisMetSerLeu 244741 : TAAACGATCGAACATGGTCGTTGAAATCACCGCTGGAAAAGTATTACATATGTCGCTT : 244797 388 : ThrThrPheGlyAsn >>>> Target Intron 2 >>>> ValLeuLysThrSe : 397 !|||||||||:!! 89 bp |||:!!||||||.! TyrThrPheGlyAsp++ ++ValValLysThrGl 244798 : TACACGTTCGGCGATgt.........................agGTAGTAAAAACAGG : 244916 398 : rPheAlaTyrLeuAsnPheVal : 404 !|||||||||||||||.!.:!! yPheAlaTyrLeuAsnMetLeu 244917 : ATTCGCCTACTTGAATATGCTT : 244939 vulgar: gi|815911896|ref|XP_012241389.1| 300 404 . KQ414889.1 244432 244939 + 212 M 40 120 5 0 2 I 0 102 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244433 244939 212 + . gene_id 22 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244433 244552 . + . KQ414889.1 exonerate:protein2genome:local exon 244433 244552 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244553 244554 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244553 244658 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244657 244658 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244659 244814 . + . KQ414889.1 exonerate:protein2genome:local exon 244659 244814 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244815 244816 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244815 244903 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 244902 244903 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244904 244939 . + . KQ414889.1 exonerate:protein2genome:local exon 244904 244939 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244433 244939 212 + . alignment_id 22 ; Query gi|815911896|ref|XP_012241389.1| ; Align 244433 301 120 ; Align 244659 341 156 ; Align 244904 393 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 211 Query range: 303 -> 393 Target range: 206050 -> 206401 304 : AspTrpGlnGlnAsnAsnLysIleGlyLeuThrThrTyrSerMetLeuLeuValSerL : 323 !!:|||:!!.!.||||||! !! !!.!:!!! !..!|||! !! !|||! !:!!|||! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 324 : euThrPheAsnMetPheLeuLeuCysTyrIleGlyAsnLeuLeuIleGluLys >>> : 341 !|||||| !:!:|||:!!|||||||||||||||.!.|||||||||!!::!! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 342 : > Target Intron 1 >>>> SerThrSerValGlyIleSerCysTyrMetIleA : 352 81 bp !:! ! !||||||:!:!!!! !! !! !:!:: ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 353 : spTrpTyrArgLeuProValLysThrValGlnAspLeuIleLeuIleIleAlaMetSe : 371 !!||||||||||||||| !!:! !!.!!::..!:!!|||||||||||||||||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 372 : rAsnSerProAlaLysIleSerAlaGlyArgIlePheLeuLeuSerLeuThrThrPhe : 390 ||||! !||| !|||:!!!!!||||||!:!!!:||| !:!!||||||.!!!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 391 : GlyAsnVal : 393 !:!!||| ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: gi|815911896|ref|XP_012241389.1| 303 393 . KQ414889.1 206050 206401 + 211 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 211 + . gene_id 23 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 211 + . alignment_id 23 ; Query gi|815911896|ref|XP_012241389.1| ; Align 206051 304 111 ; Align 206243 341 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 295 -> 393 Target range: 214605 -> 215022 296 : LeuLeuGluTyrTyrCysIleThrAspTrpGlnGlnAsnAsnLysIleGlyLeuThrT : 315 :::::::::::: ::: :!:|||.!...!|||||| !! ! ! !..!| IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 316 : hrTyrSerMetLeuLeuValSerLeuThrPheAsnMetPheLeuLeuCysTyrIleGl : 334 ||||| !:!!|||! !:!!|||||||||||||||:::|||:::...||||||||||| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 335 : yAsnLeuLeuIleGluLys >>>> Target Intron 1 >>>> SerThrSerV : 344 |.!.|||:!! !|||:!! 123 bp !!!! !!.!| yGluLeuValSerGluGln++ ++CysLysLysV 214721 : CGAGCTTGTGTCTGAACAGgt.........................agTGCAAAAAGG : 214873 345 : alGlyIleSerCysTyrMetIleAspTrpTyrArgLeuProValLysThrValGlnAs : 363 ||||| ! !! |||||||||!!:|||||||||||||||! !!!.! ! !! alGlyGluValSerTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCy 214874 : TCGGAGAAGTATCGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTG : 214930 364 : pLeuIleLeuIleIleAlaMetSerAsnSerProAlaLysIleSerAlaGlyArgIle : 382 !! !|||||||||!!:||||||||||||||| !!!.!|||.!!!!!||||||!.!!!: sCysIleLeuIleMetAlaMetSerAsnSerSerValLysPheThrAlaGlyAsnMet 214931 : TTGCATTTTGATCATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATG : 214987 383 : PheLeuLeuSerLeuThrThrPheGlyAsnVal : 393 ! !||||||:!!!:!||||||.!!!:!||| ValGluLeuSerIleSerThrPheSerSerVal 214988 : GTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215022 vulgar: gi|815911896|ref|XP_012241389.1| 295 393 . KQ414889.1 214605 215022 + 205 M 45 135 5 0 2 I 0 119 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 215022 205 + . gene_id 24 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 215022 205 + . alignment_id 24 ; Query gi|815911896|ref|XP_012241389.1| ; Align 214606 296 135 ; Align 214864 341 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 173 Query range: 300 -> 397 Target range: 254062 -> 254445 301 : CysIleThrAspTrpGlnGlnAsnAsnLysIleGlyLeuThrThrTyrSerMetLeuL : 320 |||.!! !!!:||| !:!!!:!:!! ! !||| !||||||! !:!: !| CysPhe***GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrL 254063 : tgctTCTAGGAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACAC : 254120 321 : euValSerLeuThrPheAsnMetPheLeuLeuCysTyrIleGlyAsnLeuLeuIleGl : 339 |||||:!!:!!..! ||| ||||||:::|||||||||.!!:!! !|||! !|| euValAlaValValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGl 254121 : TCGTTGCTGTTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGA : 254177 340 : uLysSerThrSer{V} >>>> Target Intron 1 >>>> {al}GlyIleSer : 347 |:!! ! !..!{:} 92 bp {!!}||| ! ! uGlnValGlnGlu{I}-+ ++{le}GlyGluVal 254178 : ACAGGTACAAGAG{A}ct.........................ag{TT}GGTGAAGTG : 254293 348 : CysTyrMetIleAspTrpTyrArgLeuProValLysThrValGlnAspLeuIleLeuI : 367 !||||||! !||||||||| !|||||| !!:!! !:!!! ||||||||||||| ValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuI 254294 : GTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGA : 254353 368 : leIleAlaMetSerAsnSerProAlaLysIleSerAlaGlyArgIlePheLeuLeuSe : 386 |||||.!! |||||| ! !!.!:!!|||!!!||||||:::|||||| :::|| leIleThrArgSerAsnValValValGluIleThrAlaGlyLysIlePheHisMetSe 254354 : TCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTC : 254410 387 : rLeuThrThrPheGlyAsnValLeuLysThrSer : 397 |||| !|||||||||:!!||| !:!!|||!:! rLeuTyrThrPheGlyAspValSerGluThrAsn 254411 : GCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 254445 vulgar: gi|815911896|ref|XP_012241389.1| 300 397 . KQ414889.1 254062 254445 + 173 M 43 129 S 0 1 5 0 2 I 0 88 3 0 2 S 1 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254063 254445 173 + . gene_id 25 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254063 254192 . + . KQ414889.1 exonerate:protein2genome:local exon 254063 254192 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254193 254194 . + . intron_id 1 ; splice_site "CT" KQ414889.1 exonerate:protein2genome:local intron 254193 254284 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254283 254284 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254285 254445 . + . KQ414889.1 exonerate:protein2genome:local exon 254285 254445 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254063 254445 173 + . alignment_id 25 ; Query gi|815911896|ref|XP_012241389.1| ; Align 254063 301 129 ; Align 254287 345 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 342 -> 408 Target range: 264732 -> 265010 343 : SerValGlyIleSerCysTyrMetIleAspTrpTyrArgLeuProValLysThrValG : 362 !.!|||||| ! !|||||| :!!|||||| !|||||| !||| !:!!! LysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrLysAspIleL 264733 : AAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACAAAGATATCC : 264790 363 : lnAspLeuIleLeuIleIleAlaMetSerAsnSerProAlaLysIleSerAlaGlyAr : 381 |||||||||||||||||| !! |||!:! ! ! !|||.!!!!!||||||!: euAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheThrAlaGlyLy 264791 : TTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCACCGCTGGAAA : 264847 382 : gIlePheLeuLeuSerLeuThrThrPheGlyAsn >>>> Target Intron 1 > : 393 !|||.!!! !:!!|||:!! !||||||.!!:!! 80 bp sIleLeuHisMetSerMetTyrThrPheSerAsp++ 264848 : GATACTTCACATGTCCATGTACACATTCAGTGACgt...................... : 264885 394 : >>> ValLeuLysThrSerPheAlaTyrLeuAsnPheValArgAsnThrIle : 408 |||:!!|||:!!||||||.!!|||||||||!!.:!!|||.!.|||!!: ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArgGlnThrMet 264886 : ...aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGCCAAACGATG : 265010 vulgar: gi|815911896|ref|XP_012241389.1| 342 408 . KQ414889.1 264732 265010 + 144 M 50 150 5 0 2 I 0 76 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264733 265010 144 + . gene_id 26 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264733 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264733 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265010 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265010 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264733 265010 144 + . alignment_id 26 ; Query gi|815911896|ref|XP_012241389.1| ; Align 264733 343 150 ; Align 264963 393 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 342 -> 399 Target range: 238634 -> 238805 343 : SerValGlyIleSerCysTyrMetIleAspTrpTyrArgLeuProValLysThrValG : 362 !.!|||||| ! ! !||||||! !||||||||| !|||||| !!:!! !:!!! LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 238635 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 238692 363 : lnAspLeuIleLeuIleIleAlaMetSerAsnSerProAlaLysIleSerAlaGlyAr : 381 |||||||||||||||||| ! |||||| ! !!.!|||:!!!!!||||||!: euAspLeuIleLeuIleIleLysArgSerAsnValValValLysValThrAlaGlyLy 238693 : TCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCACCGCTGGAAA : 238749 382 : gIlePheLeuLeuSerLeuThrThrPheGlyAsnValLeuLysThrSerPheAla : 399 !:!!!!.! !:!!|||||| !|||||||||:!!||| !:!!|||!:!.!!||| sValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeuAla 238750 : AGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTTGCT : 238805 vulgar: gi|815911896|ref|XP_012241389.1| 342 399 . KQ414889.1 238634 238805 + 138 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238635 238805 138 + . gene_id 27 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238635 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238635 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238635 238805 138 + . alignment_id 27 ; Query gi|815911896|ref|XP_012241389.1| ; Align 238635 343 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 182 -> 270 Target range: 202697 -> 203155 183 : ThrTyrSerGlyPhe<->PheAspAlaGlnLysSerProIleTyrGluIleValTyrV : 201 :!!!:!||||||||| .!!|||!.!::! ! ||||||:!: !!|||||| !!!:! SerPheSerGlyPheIleIleAspValArgTyrSerProValAsnGluIlePhePheS 202698 : TCCTTCTCAGGATTTATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCT : 202755 202 : alLeuGlnCysMetCysThrPheValPheAsnSerValThrValGlyCysCysGlyLe : 220 !:!!!:! !:!:..!..!.!!:!!.!!:!!.!!||||||||||||..!||| !!|| erIleArgIleValAlaValIleLeuIleHisGlyValThrValGlyAlaCysCysLe 202756 : CGATTCGAATCGTAGCTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTT : 202812 221 : uAlaAlaLeuPheValThrHisAlaCysGlyGlnIleAspValValIleSerGlnLeu : 239 |.!!|||||||||!.!..!|||! !|||||||||!!:||||||:!!!!::!! !||| uThrAlaLeuPheAlaValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeu 202813 : GACAGCGTTGTTTGCGGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTG : 202869 240 : AsnAspLeuValGluGlyLysPheAlaLys{L} >>>> Target Intron 1 >> : 250 .!. !!|||:!!!!:|||:::! ! !! !{!} 191 bp GluHisLeuMetAspGlyArgSerAspMet{A}++ 202870 : GAACATTTGATGGATGGTCGTTCGGATATG{A}gt....................... : 202905 251 : >> {ys}AsnSerAspProAsnThrArgLeuMetGluIleValLysHisHisIleAr : 267 {!.}.!...!:!! !||| !|||:!!:!! ||||||!..!!.|||||||| +-{sn}GluGlnAsnValAsnGlyArgMetValThrIleValSerGlnHisIleAr 202906 : ..at{AT}GAGCAAAATGTGAATGGCAGAATGGTGACCATCGTGAGCCAACACATACG : 203144 268 : gIleLeuLys : 270 |||||||||| gIleLeuLys 203145 : GATACTGAAA : 203155 vulgar: gi|815911896|ref|XP_012241389.1| 182 270 . KQ414889.1 202697 203155 + 136 M 5 15 G 0 3 M 62 186 S 0 1 5 0 2 I 0 187 3 0 2 S 1 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202698 203155 136 + . gene_id 28 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 202698 202902 . + . KQ414889.1 exonerate:protein2genome:local exon 202698 202902 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 202903 202904 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 202903 203093 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 203092 203093 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 203094 203155 . + . KQ414889.1 exonerate:protein2genome:local exon 203094 203155 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202698 203155 136 + . alignment_id 28 ; Query gi|815911896|ref|XP_012241389.1| ; Align 202698 183 15 ; Align 202716 188 186 ; Align 203096 251 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 335 -> 396 Target range: 211758 -> 211941 336 : LeuLeuIleGluLysSerThrSerValGlyIleSerCysTyrMetIleAspTrpTyrA : 355 |||:!!.!! !:!!!!!..!!.!|||||| !!.!! !||||||||||||||||||| LeuIlePhe***GlnThrValLysValGlyGluLysSerTyrMetIleAspTrpTyrA 211759 : CTCATATTTTGACAGACAGTAAAAGTTGGAGAAAAGTCTTACATGATCGACTGGTATC : 211816 356 : rgLeuProValLysThrValGlnAspLeuIleLeuIleIleAlaMetSerAsnSerPr : 374 ||:!!|||! !|||! !! ! !! !:!! !|||!!:|||:!!||||||:!!||| ! rgMetProGlyLysLysGlyLeuValValProLeuMetIleSerMetSerHisSerTh 211817 : GAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGATGATCTCCATGTCACATTCGAC : 211873 375 : oAlaLysIleSerAlaGlyArgIlePheLeuLeuSerLeuThrThrPheGlyAsnVal : 393 !.!!||||||!!!||||||!.!:!!.!!:!!||||||:!!!:!!:!||||||:!!||| rThrLysIleThrAlaGlyAsnLeuIleValLeuSerIleSerSerPheGlyAspVal 211874 : CACCAAAATCACCGCTGGCAATCTCATCGTTCTTTCAATCAGTAGTTTCGGTGACGTA : 211930 394 : LeuLysThr : 396 ||| SerValThr 211931 : AGtgttaca : 211941 vulgar: gi|815911896|ref|XP_012241389.1| 335 396 . KQ414889.1 211758 211941 + 131 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 211759 211941 131 + . gene_id 29 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 211759 211941 . + . KQ414889.1 exonerate:protein2genome:local exon 211759 211941 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 211759 211941 131 + . alignment_id 29 ; Query gi|815911896|ref|XP_012241389.1| ; Align 211759 336 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 331 -> 393 Target range: 224472 -> 224658 332 : TyrIleGlyAsnLeuLeuIleGluLysSerThrSerValGlyIleSerCysTyrMetI : 351 |||.!! !:::|||!!!.!! ::: ...:::||| ! !! ||||||| TyrPheLeuSerLeuPhePheProGlnCysGluLysIleGlyGlnValSerTyrMetI 224473 : TATTTTTTATCGCTATTTTTTCCtcagtgtgaaaaaattggacaAGTGTCGTACATGA : 224530 352 : leAspTrpTyrArgLeuProValLysThrValGlnAspLeuIleLeuIleIleAlaMe : 370 ||||||||||||||||| !!! !!!.! ! !! ! !! !||||||||||||||||| leAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMe 224531 : TCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGAT : 224587 371 : tSerAsnSerProAlaLysIleSerAlaGlyArgIlePheLeuLeuSerLeuThrThr : 389 |||||||||| !! !|||:!:!!!||||||!.!!!: !! !|||!!!||||||||| tSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThr 224588 : GTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACT : 224644 390 : PheGlyAsnVal : 393 ||||||:!!||| PheGlyAspVal 224645 : TTCGGTGACGTA : 224658 vulgar: gi|815911896|ref|XP_012241389.1| 331 393 . KQ414889.1 224472 224658 + 131 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224473 224658 131 + . gene_id 30 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224473 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224473 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224473 224658 131 + . alignment_id 30 ; Query gi|815911896|ref|XP_012241389.1| ; Align 224473 332 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 336 -> 402 Target range: 292380 -> 292578 337 : LeuIleGluLysSerThrSerValGlyIleSerCysTyrMetIleAspTrpTyrArgL : 356 :!!:!: ! :!!.!!!:!..!:!!!.! !:!!! !||| ! !!!:||||||!.!| ValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnL 292381 : GTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATC : 292438 357 : euProValLysThrValGlnAspLeuIleLeuIleIleAlaMetSerAsnSerProAl : 375 ||||| !::!! !!.!!::|||:!!:!!|||:!::!!|||!!:!!!!!. !||| euProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIl 292439 : TGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGAT : 292495 376 : aLysIleSerAlaGlyArgIlePheLeuLeuSerLeuThrThrPheGlyAsnValLeu : 394 !|||:!!!!!||||||!:!||||||:!!|||||||||!.!||||||||| !|||! ! eLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArg 292496 : CAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGT : 292552 395 : LysThrSerPheAlaTyrLeuAsn : 402 :!!:!!!.!.!.!.!! :!!:!! GluSerLysLeuValLeuIleHis 292553 : GAATCAAAACTAGTCTTGATACAC : 292578 vulgar: gi|815911896|ref|XP_012241389.1| 336 402 . KQ414889.1 292380 292578 + 131 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292381 292578 131 + . gene_id 31 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292381 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292381 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292381 292578 131 + . alignment_id 31 ; Query gi|815911896|ref|XP_012241389.1| ; Align 292381 337 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 339 -> 407 Target range: 297641 -> 297845 340 : LysSerThrSerValGlyIleSerCysTyrMetIleAspTrpTyrArgLeuProValL : 359 :!!:!! !!.! !!|||! !:!!..!|||! |||!!:||||||!.!|||||| !! GlnAlaGluLysPheGlyAsnAlaAlaTyrAsnIleGluTrpTyrAsnLeuProProA 297642 : CAGGCTGAAAAATTCGGCAATGCAGCTTATAACATCGAATGGTACAACTTACCGCCAA : 297699 360 : ysThrValGlnAspLeuIleLeuIleIleAlaMetSerAsnSerProAlaLysIleSe : 378 !.! !!.!! ||||||:!:|||!!:|||!.!!!::!!!!.! !||| !!!:!:!!!! snArgAlaLeuAspLeuValLeuMetIleGlyIleAlaLysPheProProArgLeuTh 297700 : ACAGGGCTCTCGATCTGGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCAC : 297756 379 : rAlaGlyArgIlePheLeuLeuSerLeuThrThrPheGlyAsnValLeuLysThrSer : 397 !...|||:::|||||| :::|||:!!!.!||||||.!! !|||! !!:: ||| rGlyGlyLysIlePheAspIleSerIleAsnThrPheSerAlaValArgArgGlnSer 297757 : AggtggaaaaatattcgatatatCGATAAACACGTTCAGTGCCGTACGTAgacaaagt : 297813 398 : PheAlaTyrLeuAsnPheValArgAsnThr : 407 ... ::: :::|||||| LeuIleAsnArgAsp***LysLysAsnThr 297814 : ttaattaatcgtgattaaaaaaagaacacg : 297845 vulgar: gi|815911896|ref|XP_012241389.1| 339 407 . KQ414889.1 297641 297845 + 113 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297642 297845 113 + . gene_id 32 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297642 297845 . + . KQ414889.1 exonerate:protein2genome:local exon 297642 297845 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297642 297845 113 + . alignment_id 32 ; Query gi|815911896|ref|XP_012241389.1| ; Align 297642 340 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 342 -> 402 Target range: 230253 -> 230433 343 : SerValGlyIleSerCysTyrMetIleAspTrpTyrArgLeuProValLysThrValG : 362 !.!|||||| !!.!! |||||||||!!:|||||||||||| !!! !!!.! ! !! LysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyAsnLysLysL 230254 : AAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAAACAAGAAGC : 230311 363 : lnAspLeuIleLeuIleIleAlaMetSerAsnSerProAlaLysIleSerAlaGlyAr : 381 !! !||||||||||||||||||||||||!!! !!.!!|||.!!!!!||||||!. euCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheThrAlaGlyAs 230312 : TCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTACAGCAGGAAA : 230368 382 : gIlePheLeuLeuSerLeuThrThrPheGlyAsnValLeuLysThrSerPheAlaTyr : 400 !!!: !! !||||||:!!!.!||||||.!!:!!||| !! ! !! !! !!.!||| nMetValGluLeuSerValAsnThrPheSerAspValSerIleIlePheSerValTyr 230369 : CATGGTTGAATTATCCGTAAACACTTTCAGCGACGTAAGTATCATATTCTCTGTTTAC : 230425 401 : LeuAsn : 402 !||| ThrAsn 230426 : ACGAAT : 230433 vulgar: gi|815911896|ref|XP_012241389.1| 342 402 . KQ414889.1 230253 230433 + 111 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230254 230433 111 + . gene_id 33 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230254 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230254 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230254 230433 111 + . alignment_id 33 ; Query gi|815911896|ref|XP_012241389.1| ; Align 230254 343 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 303 -> 340 Target range: 264537 -> 264648 304 : AspTrpGlnGlnAsnAsnLysIleGlyLeuThrThrTyrSerMetLeuLeuValSerL : 323 !!:|||:!!...:!:::: ...||||||||||||! !|||:!!|||:!!|||: GluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerM 264538 : GAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATACTGATATCAA : 264595 324 : euThrPheAsnMetPheLeuLeuCysTyrIleGlyAsnLeuLeuIleGluLys : 340 !! ! !|||!!:||||||:!!||||||||||||.!.:!!|||! !|||::: etCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGln 264596 : TGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcag : 264648 vulgar: gi|815911896|ref|XP_012241389.1| 303 340 . KQ414889.1 264537 264648 + 102 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264538 264648 102 + . gene_id 34 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264538 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264538 264648 102 + . alignment_id 34 ; Query gi|815911896|ref|XP_012241389.1| ; Align 264538 304 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 303 -> 340 Target range: 224323 -> 224434 304 : AspTrpGlnGlnAsnAsnLysIleGlyLeuThrThrTyrSerMetLeuLeuValSerL : 323 :::|||......::::!! !! !.!! !..!||||||! !!!:||||||:!!|||| GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 324 : euThrPheAsnMetPheLeuLeuCysTyrIleGlyAsnLeuLeuIleGluLys : 340 |||||||||||:::|||:::...||||||||||||.!.|||:!! !|||::: euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcag : 224434 vulgar: gi|815911896|ref|XP_012241389.1| 303 340 . KQ414889.1 224323 224434 + 101 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224434 101 + . gene_id 35 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224434 101 + . alignment_id 35 ; Query gi|815911896|ref|XP_012241389.1| ; Align 224324 304 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1143 Query range: 0 -> 404 Target range: 303127 -> 305816 1 : MetTyrProSerIleArgSerGlnThrAspGlnSer<->ArgAsnProAsnTyrLysG : 19 |||:!!! !|||!!:|||..!|||! !|||!:!!.! |||||| !|||||||||: MetHisLeuSerMetArgGluGlnIleAspArgLysProArgAsnLeuAsnTyrLysL 303128 : ATGCATCTCTCTATGCGAGAGCAGATCGATCGGAAACCGCGGAATTTGAATTACAAGA : 303185 20 : luAspIleIleTyrValThrLysHisAsnLysTrpIleLeuAsnCysIleGlyIleTr : 38 !!||||||:!!|||||||||||||||!:!||||||||||||!!.! !:!!|||||||| ysAspIleValTyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTr 303186 : AAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTG : 303242 39 : pProThrValLeuLysGlyMetSerLysPheLeuProLysLeuValIleGlyPheSer : 57 ||||.!!|||||| ! ! !! :!! !||||||||||||:!!..!||||||.!!||| pProAlaValLeuAspGluThrAlaGlyPheLeuProLysIleThrIleGlyLeuSer 303243 : GCCAGCCGTGTTGGACGAAACCGCAGGATTCCTACCAAAAATCACCATTGGACTCAGT : 303299 58 : AsnLeuMetProSerPheIleIleValGlnCysValLeuTyrIleValLeuGluGluL : 77 ||||||:!:! !! !|||! !:!::!!! !|||:!!|||:!!|||:!!!!!|||:!!| AsnLeuValLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnL 303300 : AATTTGGTTCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAA : 303359 78 : ysAsnProLeuLeuArgLeuArgPheCysSerLeuAlaTrpTyrSerLeuIleAsnLe : 96 ||:!! !!:!!:!!||||||!:!.!.! !.!!||| ! ! !:!!!!||||||:::|| ysAspThrIleIleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLe 303360 : AGGATACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTT : 303416 97 : uMetLysTyrTrpAlaLeuIleAlaArgLysProAspIleGluTyrCysIleLysTrp : 115 ||||||||||||||||||| !.!!||||||||| |||:!! ! ||||||:!! ! uMetLysTyrTrpAlaLeuAlaThrArgLysProArgIleLysGluCysIleGluGlu 303417 : GATGAAGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAG : 303473 116 : MetGlnThrAspTrpLysGln >>>> Target Intron 1 >>>> ValGluPh : 125 :!!|||!:!|||||||||:!! 938 bp ||||||! ValGlnSerAspTrpLysGlu++ ++ValGluSe 303474 : GTGCAAAGTGATTGGAAAGAGgt.........................agGTGGAATC : 304441 126 : eGlnArgAsnArgMetLeuMetLeuLysTyrGlyLysIleGlyArgAspLeuThrIle : 144 !! |||:!!||| :!!|||||||||||||||:!!!!:||||||:!!||||||||| rLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIle 304442 : TCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATA : 304498 145 : TyrSerAlaValPheMetTyrSerAlaGlyMetCysTyrThrThrIleMetGlnTyrG : 164 !!!!|||:!!|||||||||!!!!.!|||! !||| !|||:!!||||||!:!! IleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheA 304499 : ATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCG : 304558 165 : lyMetArgMetSerLeuLysGluAsnAsnArgThrLeuArgIleLeuValTyrProTh : 183 .!! !!! !! !:!! ! ||| !!|||||||||:!!!:! |||||||||||||| laThrGlyThrTyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProTh 304559 : CGACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCAC : 304615 184 : rTyrSerGlyLeuPheAspIleGlnLysSerProValTyrGluIleValTyrValPhe : 202 |||||||!.!|||||||||:!!|||! !||||||:!!||||||:!:|||||| !! !! rTyrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheVal 304616 : CTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTT : 304672 203 : GlnCysIleTyrAlaPheThrCysIleSerValThrValGlyCysCysGlyLeuAlaA : 222 !!.|||!!:! !!.!!:!..! ! !|||:!!|||!.!|||..!||||||||||||| HisCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaA 304673 : CATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCG : 304732 223 : laLeuPheAlaThrHisAlaCysGlyGlnIleAspValValIleSerGlnLeuAspAs : 241 |||||||||||||||||||||||||||||||||||:!!|||!!:|||!:!|||! !|| laLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAs 304733 : CTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGA : 304789 242 : pLeuValAspGlyThrPheSerLysLysSerSerAsnProAspThrArgLeuMetGlu : 260 |||||||:!! ||||||:!!||||||:!! !|||! !||||||!!:||| pLeuValAsn---------SerLysGluSerSerAspLeuAspLysArgLeuIleGlu 304790 : TCTTGTCAAC---------AGCAAAGAATCATCTGATTTAGATAAACGATTAATAGAA : 304837 261 : IleValLysHisHisIleArgIleLeu{Ly} >>>> Target Intron 2 >>>> : 270 ||||||:!!||||||:!:|||||||||{!:} 70 bp IleValGluHisHisLeuArgIleLeu{Ar}++ 304838 : ATTGTTGAGCATCATTTGCGAATTTTA{AG}gt......................... : 304871 271 : {s}PheSerAlaMetIleGluThrValLeuGlnGluValCysPhePheAspPheIl : 288 {!}|||||||||!!::!::!!||||||||||||||||||||||||!!.!!:||||| ++{g}PheSerAlaIleValGlnThrValLeuGlnGluValCysPheLeuGluPheIl 304872 : ag{A}TTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTTCTTGGAATTCAT : 304991 289 : eGlyThrThrLeuLeuIleCysSerLeuGlnTyrLeuCysIleThr >>>> Targe : 304 ||||:!!||||||||||||||| !|||:!!|||! !||||||||| eGlySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysIleThr++ 304992 : TGGTTCTACCTTACTGATATGTCTACTTGAATACTACTGTATAACGgt.......... : 305041 305 : t Intron 3 >>>> AspLeuGlnHisAsnAsnLysIleGlyLeuAlaThrTyrSe : 317 62 bp |||! !:!! !!:!|||! :!!.!!|||.!!||||||!! ++AspTrpGluSerSerAsnThrValSerLeuThrThrTyrTh 305042 : ...............agGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATAC : 305140 318 : rMetLeuLeuIleGlyPheThrValAsnMetMetLeuLeuCysTyrIleGlyAsnLeu : 336 !:!!|||||||||..! ! ||| !!|||!!:.!.:!!|||||||||||||||.!.:!! rValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIle 305141 : AGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATT : 305197 337 : LeuMetGluLys >>>> Target Intron 4 >>>> SerThrSerValGlyIl : 346 |||||||||||| 413 bp |||!:!|||||||||:! LeuMetGluLys++ ++SerSerSerValGlyLe 305198 : CTTATGGAAAAGgt.........................agAGCAGTAGCGTTGGATT : 305640 347 : eSerCysTyrMetIleGluTrpTyrArgLeuProGlyLysThrMetGlnGlyLeuIle : 365 !||||||!:!||||||...||||||!.!|||||| !||||||!!:!!.||||||||| uSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIle 305641 : ATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATT : 305697 366 : LeuIleSerAlaMetSerAsnSerProAlaLysIleSerAlaGlyArgIlePheLeuL : 385 ||||||! !|||||||||!:!!:!|||||||||||||||||||||!:!:!! !! !| LeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysValValAspL 305698 : TTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATT : 305757 386 : euSerLeuProAlaPheGlyAsnIleLeuLysThrSerPheAlaTyrLeuAsnPheVa : 404 |||||||| !!.!!|||||||||:!: ! ! !...:::::: ::::::...|| euSerLeuSerThrPheGlyAsnValSerTyrTyrGlnTyrSerAsnIleSerIleVa 305758 : TATCTTTATCCACATTTGGAAACGTGAGTTACTATcaatattccaatatttcaattgt : 305814 405 : l : 404 | l 305815 : t : 305816 vulgar: gi|815911912|ref|XP_012241397.1| 0 404 . KQ414889.1 303127 305816 + 1143 M 12 36 G 0 3 M 110 330 5 0 2 I 0 934 3 0 2 M 122 366 G 3 0 M 22 66 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 37 111 5 0 2 I 0 409 3 0 2 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303128 305816 1143 + . gene_id 1 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303128 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303128 303496 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304868 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 2 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305816 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305816 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303128 305816 1143 + . alignment_id 1 ; Query gi|815911912|ref|XP_012241397.1| ; Align 303128 1 36 ; Align 303167 13 330 ; Align 304435 123 366 ; Align 304801 248 66 ; Align 304940 271 99 ; Align 305101 304 111 ; Align 305625 341 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 369 Query range: 13 -> 270 Target range: 208185 -> 208962 14 : AsnProAsnTyrLysGluAspIleIleTyrValThrLysHisAsnLysTrpIleLeuA : 33 ||| !|||||||||.!.|||:!:! !!:! !..!:::! ||| !|||! |||! AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 34 : snCysIleGlyIleTrpProThrValLeu<-><->LysGlyMetSerLysPheLeuPr : 50 !. |||||| !||||||! ! !:!! ... !!:!:..!!!. !! !! ysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHi 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCA : 208300 51 : oLysLeuValIleGlyPheSerAsnLeuMetProSerPheIleIleValGlnCysVal : 69 !! |||:!!! !! !.!!|||:!!! !:!!! !.!!||||||:!::!!! ! !! ! sIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGly 208301 : TATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGC : 208357 70 : LeuTyrIleValLeuGluGluLysAsnProLeuLeuArgLeuArgPheCysSerLeuA : 89 :!!!:! :!!|||! !! :!!:!! !! ! !!:!|||!:!.!!|||||| ! MetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaL 208358 : ATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTC : 208417 90 : laTrpTyrSerLeuIleAsnLeuMetLysTyrTrpAlaLeuIleAlaArgLysProAs : 108 ! ! !:!! !:!!!!: !!!! !|||||| ! !:!!! !!.!|||:!! !|| euSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAs 208418 : TGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGA : 208474 109 : pIleGluTyrCysIleLysTrpMetGlnThrAspTrpLysGlnValGluPheGlnArg : 127 ||||..! ! |||:!!:!!!:::!::!!.!!||||||!:!.!.|||||| !:!!..! pIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGlu 208475 : CATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAG : 208531 128 : AsnArgMetLeuMetLeuLysTyrGlyLysIleGlyArgAspLeuThrIleTyrSerA : 147 :!!|||! !:!!|||||| ! !!!.!!...!!!.!||| ! |||! !:!: !!!! AspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysG 208532 : GACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCG : 208591 148 : laValPheMetTyrSerAlaGlyMetCysTyrThrThrIleMetGlnTyrGlyMetAr : 166 .!!.!|||||||||.!!!.. ::: ||| ! !:!!! ! ! ! lyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAs 208592 : GAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGA : 208648 167 : gMetSerLeuLysGlu<->AsnAsnArgThrLeuArgIleLeuValTyrProThrTyr : 184 !! ! !:!!:!!||| ..!||| !|||! !|||! ||||||||||||..! ! pLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValPro 208649 : CAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCT : 208705 185 : SerGlyLeuPheAspIleGlnLysSerProValTyrGluIleValTyrValPheGlnC : 204 !.! !:!!.!.|||:!!!:! ! ||||||||| !!|||||| !!|||..! ! |||! LysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnL 208706 : AAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAAT : 208765 205 : ysIleTyrAlaPheThrCysIleSerValThrValGlyCysCysGlyLeuAlaAlaLe : 223 :!:! !.!|||..!..! !!:!:!!|||||||||..!||||||||||||||||| euLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLe 208766 : TGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCT : 208822 224 : uPheAlaThrHisAlaCysGlyGlnIleAspValValIleSerGlnLeuAspAspLeu : 242 |.!!|||! !|||||||||||||||:!:.!.:!!:!!!!:||| !:!!!!: ! ||| uLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeu 208823 : GCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTG : 208879 243 : ValAspGlyThrPheSerLysLysSerSerAsnProAspThrArgLeuMetGluIleV : 262 ||||||||| ! ..! ! :!!..!!.!||| !||| !|||||| .!.|||| ValAspGlyArg---GluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleV 208880 : GTCGATGGACGG---GAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCG : 208936 263 : alLysHisHisIleArgIleLeuLys : 270 ||:!!!!.|||:!!|||:!::!!||| alGluGlnHisValArgValIleLys 208937 : TGGAGCAGCATGTTCGAGTGATCAAG : 208962 vulgar: gi|815911912|ref|XP_012241397.1| 13 270 . KQ414889.1 208185 208962 + 369 M 29 87 G 0 6 M 129 387 G 0 3 M 75 225 G 1 0 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 208962 369 + . gene_id 2 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208186 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208962 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208186 208962 369 + . alignment_id 2 ; Query gi|815911912|ref|XP_012241397.1| ; Align 208186 14 87 ; Align 208279 43 387 ; Align 208669 172 225 ; Align 208894 248 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 369 Query range: 10 -> 269 Target range: 284487 -> 285285 11 : GlnSerArgAsnProAsnTyrLysGluAspIleIleTyrValThrLysHisAsnLysT : 30 ...|||! !:!! !!!..!:: ! !||| !!:||| !..!:!! |||:::| SerSerThrAspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgT 284488 : TCTTCAACCGATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTT : 284545 31 : rpIleLeuAsnCysIleGlyIleTrpProThrValLeu<-><->LysGlyMetSerLy : 47 ||.!!|||!!. ||||||:!!|||||| ! !||| ! !:!!..!|| rpPheLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLy 284546 : GGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAA : 284602 48 : sPheLeuProLysLeuValIleGlyPheSerAsnLeuMetProSerPheIleIleVal : 66 |.!! ! !! !:!!:!! !.!!||| !!!!:!! !.!!|||:!!:!:||| sIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuVal 284603 : GATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTA : 284659 67 : GlnCysValLeuTyrIleValLeuGluGluLysAsnProLeu<->LeuArgLeuArgP : 85 ! !|||!.!|||! !! !||||||!!::!!! ..! !||| !!:!:!!!:!. ProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysM 284660 : CCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAA : 284719 86 : heCysSerLeuAlaTrpTyrSerLeuIleAsnLeuMetLysTyrTrpAlaLeuIleAl : 104 !. !.!!! ! ! ! !:!!!!:!!!!: !!!:||||||!:: !||||||:! etIleGlyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSe 284720 : TGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTC : 284776 105 : aArgLysProAspIleGluTyrCysIleLysTrpMetGlnThrAspTrpLysGlnVal : 123 !||| ! ! |||! ! |||:!:||| !!:!::.!!||||||...! ..! rArgGlyGlyLysIleGlyGlnCysValLysAspIleArgAlaAspTrpSerLeuThr 284777 : GCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACG : 284833 124 : <-><-><->GluPheGlnArgAsnArgMetLeuMetLeuLysTyrGlyLysIleGlyA : 140 ... :::......||| :::||| ! ! !!.!!:!||||||| LeuSerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyA 284834 : CTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGAC : 284893 141 : rgAspLeuThrIleTyrSerAlaValPheMetTyrSerAlaGlyMetCysTyrThrTh : 159 ||..!|||.!!|||!:!!!!|||! !||||||||||||!.!|||.!.! !|||||||| rgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrTh 284894 : GATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCAC : 284950 160 : rIleMetGlnTyrGlyMetArgMetSerLeuLysGluAsnAsnArgThrLeuArgIle : 178 |:!:|||! !! !!! ! !!! !! :!!|||..!|||:!!||| ! rValMetProLeuCysThrValArgThrGluIleIleAspAsnGluThrValArgSer 284951 : GGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCT : 285007 179 : LeuValTyrProThrTyrSerGlyLeuPheAspIleGlnLysSerProValTyrGluI : 198 ! !!.!!:!|||! !||| !!||||||.!!||| !::! |||||| !!:!|||| GlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluI 285008 : CAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGA : 285067 199 : leValTyrValPheGlnCysIleTyrAlaPheThrCysIleSerValThrValGlyCy : 217 ||||| ! !!.!.||||||:!: !||||||..! !|||||||||||||||.. leValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAl 285068 : TCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGC : 285124 218 : sCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspValValIle : 236 !|||.!!|||||||||:!!|||!.!! !|||!.!|||||||||.!! :!!:!!:!: aCysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuVal 285125 : TTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTG : 285181 237 : SerGlnLeuAspAspLeuValAspGlyThrPheSerLysLysSer<->SerAsnProA : 255 !!!:!!|||||| ! ||||||||||||..! .!!!:!|||.!! |||!..! !! ThrLysLeuAspLysLeuValAspGlyValLysGlyArgLysGlyLeuSerThrHisG 285182 : ACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATG : 285241 256 : spThrArgLeuMetGluIleValLysHisHisIleArgIleLeu : 269 !: !|||||| !!:|||:!!:!!||||||:!:!:!|||||| luGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu 285242 : AACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG : 285285 vulgar: gi|815911912|ref|XP_012241397.1| 10 269 . KQ414889.1 284487 285285 + 369 M 32 96 G 0 6 M 38 114 G 0 3 M 43 129 G 0 9 M 128 384 G 0 3 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284488 285285 369 + . gene_id 3 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284488 285285 . + . KQ414889.1 exonerate:protein2genome:local exon 284488 285285 . + . insertions 21 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284488 285285 369 + . alignment_id 3 ; Query gi|815911912|ref|XP_012241397.1| ; Align 284488 11 96 ; Align 284590 43 114 ; Align 284707 81 129 ; Align 284845 124 384 ; Align 285232 252 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 363 Query range: 10 -> 269 Target range: 278540 -> 279338 11 : GlnSerArgAsnProAsnTyrLysGluAspIleIleTyrValThrLysHisAsnLysT : 30 ..!|||! !:!! !!!..!::!!. !||| !!:||| !..!:!! |||:::| SerSerThrAspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgT 278541 : TCGTCAACCGATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTT : 278598 31 : rpIleLeuAsnCysIleGlyIleTrpProThrValLeu<-><->LysGlyMetSerLy : 47 ||.!!|||!!. ||||||:!!|||||| ! !||| ! !:!!..!|| rpPheLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLy 278599 : GGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAA : 278655 48 : sPheLeuProLysLeuValIleGlyPheSerAsnLeuMetProSerPheIleIleVal : 66 |.!! ! !! !:!!:!! !.!!||| !!!!:!! !.!!|||:!!:!:||| sIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuVal 278656 : GATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTA : 278712 67 : GlnCysValLeuTyrIleValLeuGluGluLysAsnProLeu<->LeuArgLeuArgP : 85 ! !|||!.!|||! !! !||||||!!::!!! ..! !||| !!:!:!!!:!. ProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysM 278713 : CCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAA : 278772 86 : heCysSerLeuAlaTrpTyrSerLeuIleAsnLeuMetLysTyrTrpAlaLeuIleAl : 104 !. !.!!! ! ! ! !:!!!! !!!: !!!:||||||!:: !|||!!::! etIleGlyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSe 278773 : TGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTC : 278829 105 : aArgLysProAspIleGluTyrCysIleLysTrpMetGlnThrAspTrpLys<-><-> : 122 !||| ! ! |||! ! |||:!:!!. !!:!::|||||||||... rArgGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThr 278830 : GCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACA : 278886 123 : <->GlnValGluPheGlnArgAsnArgMetLeuMetLeuLysTyrGlyLysIleGlyA : 140 ..! !... :::......||| :::||| ! ! !!.!!:!||||||| LeuSerTyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyA 278887 : CTTTCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGAC : 278946 141 : rgAspLeuThrIleTyrSerAlaValPheMetTyrSerAlaGlyMetCysTyrThrTh : 159 ||..!|||.!!|||!:!||||||! !||||||||||||!.!|||:!:! !||||||.! rgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAl 278947 : GATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGC : 279003 160 : rIleMetGlnTyrGlyMetArgMetSerLeuLysGluAsnAsnArgThrLeuArgIle : 178 !:!:|||! !! ! ! !!! !! :!!|||..!|||:!!||| ! aValMetProLeuPheAlaValArgThrGluIleIleAspAsnGluThrValArgSer 279004 : CGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCT : 279060 179 : LeuValTyrProThrTyrSerGlyLeuPheAspIleGlnLysSerProValTyrGluI : 198 ! !!.!!:!|||! !||| !!||||||.!!||| !::! |||||| !!:!|||| GlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluI 279061 : CAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGA : 279120 199 : leValTyrValPheGlnCysIleTyrAlaPheThrCysIleSerValThrValGlyCy : 217 ||||| ! !!.!.||||||:!: !||||||..!! !|||||||||||||||.. leValGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAl 279121 : TCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGC : 279177 218 : sCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspValValIle : 236 !|||.!!||| !|||:!!|||!.!! !|||!.!|||||||||.!! :!!:!!:!: aCysSerLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuVal 279178 : TTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTG : 279234 237 : SerGlnLeuAspAspLeuValAspGlyThrPheSerLysLysSer<->SerAsnProA : 255 !!!:!!|||||| ! |||:!!||||||..! .!!!:!|||||| |||!..! !! ThrLysLeuAspLysLeuIleAspGlyValLysGlyArgLysSerLeuSerThrHisG 279235 : ACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATG : 279294 256 : spThrArgLeuMetGluIleValLysHisHisIleArgIleLeu : 269 !: !|||||| !!:|||:!!:!!||||||:!:!:!|||||| luGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu 279295 : AACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG : 279338 vulgar: gi|815911912|ref|XP_012241397.1| 10 269 . KQ414889.1 278540 279338 + 363 M 32 96 G 0 6 M 38 114 G 0 3 M 41 123 G 0 9 M 130 390 G 0 3 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278541 279338 363 + . gene_id 4 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278541 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278541 279338 . + . insertions 21 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278541 279338 363 + . alignment_id 4 ; Query gi|815911912|ref|XP_012241397.1| ; Align 278541 11 96 ; Align 278643 43 114 ; Align 278760 81 123 ; Align 278892 122 390 ; Align 279285 252 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 341 Query range: 15 -> 270 Target range: 217153 -> 217924 16 : AsnTyrLysGluAspIleIleTyrValThrLysHisAsnLysTrpIleLeuAsnCysI : 35 .!.|||:::::::::||| !! !:!! |||:::|||:!:|||!!. ! GluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProM 217154 : GAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGA : 217211 36 : leGlyIleTrpProThr<-><->ValLeuLysGlyMetSerLysPheLeuProLysLe : 52 !:|||:!!||||||!.! ..! !! !! !!|||.!!||| !||||| etGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLe 217212 : TGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACT : 217268 53 : uValIleGlyPheSerAsnLeuMetProSerPheIleIleValGlnCysValLeuTyr : 71 |:!!! !!.!!!.!!! !! !:!! !||||||:!!.!!|||! !||| !:!!||| uIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyr 217269 : GATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTAC : 217325 72 : IleValLeuGluGluLysAsnProLeuLeuArgLeuArgPheCysSerLeuAlaTrpT : 91 :!: !!||||||! :!!:!!! !! ! !!:!|||!:!.!.! !.!!! ! ! ! ValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIleP 217326 : GTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCT : 217385 92 : yrSerLeuIleAsnLeuMetLysTyrTrpAlaLeuIleAlaArgLysProAspIleGl : 110 :!!!!:!!!!: !!!:!:||||||!:::!!||||||!.!!.!||| !!||||||.. heCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleAr 217386 : TCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCG : 217442 111 : uTyrCysIleLysTrpMetGlnThrAspTrpLysGlnValGluPheGlnArgAsnArg : 129 . ! |||:!:!:! ! !!::!! !||||||!:!.!.|||..!! !:!!!:!:!!||| gGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArg 217443 : CGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGG : 217499 130 : MetLeuMetLeuLysTyrGlyLysIleGlyArgAspLeuThrIleTyrSerAlaValP : 149 ! !|||:!! ! !!!.!!!..!!|||||| ! |||..!:!! !!!!.!! !!| GluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPheP 217500 : GAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCT : 217559 150 : heMetTyrSerAlaGlyMetCysTyrThrThrIleMetGlnTyrGlyMetArgMetSe : 168 |||||||||||... ::: ||| ! !!!:! ! !.!!:!! !!! ! heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIl 217560 : TCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAAT : 217616 169 : rLeuLysGluAsn<->AsnArgThrLeuArgIleLeuValTyrProThrTyrSerGly : 186 !|||..!|||||| |||! !|||!!!! ! ||||||!:!||| ! !.! ! eLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyr 217617 : TCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTAT : 217673 187 : LeuPheAspIleGlnLysSerProValTyrGluIleValTyrValPheGlnCysIleT : 206 :!!.!!|||! !!:: ! !!!|||..! !!|||||||||!:! !!.!!|||! ||| IleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleA 217674 : ATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCG : 217733 207 : yrAlaPheThrCysIleSerValThrValGlyCysCysGlyLeuAlaAlaLeuPheAl : 225 !!.! ! ! !.!!:!!||| !!.!..!|||.!!||||||||| !||||| laGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAl 217734 : CTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGC : 217790 226 : aThrHisAlaCysGlyGlnIleAspValValIleSerGlnLeuAspAspLeuValAsp : 244 |..!||||||||||||||||||!!:|||:!!!!:!:! !|||.!. !!|||:!!||| aValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAsp 217791 : GGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGAC : 217847 245 : GlyThrPheSerLysLysSerSerAsnProAspThrArgLeuMetGluIleValLysH : 264 |||! ! :!! ! ! !|||..!!.! !||| !|||:!! !...||||||!..! GlyArg---AlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerG 217848 : GGTAGA---GCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTC : 217904 265 : isHisIleArgIleLeuLys : 270 !.|||:!!|||||||||||| lnHisValArgIleLeuLys 217905 : AACACGTTCGGATATTAAAG : 217924 vulgar: gi|815911912|ref|XP_012241397.1| 15 270 . KQ414889.1 217153 217924 + 341 M 25 75 G 0 6 M 132 396 G 0 3 M 74 222 G 1 0 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217154 217924 341 + . gene_id 5 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217154 217924 . + . KQ414889.1 exonerate:protein2genome:local exon 217154 217924 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217154 217924 341 + . alignment_id 5 ; Query gi|815911912|ref|XP_012241397.1| ; Align 217154 16 75 ; Align 217235 41 396 ; Align 217634 173 222 ; Align 217856 248 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 331 Query range: 22 -> 340 Target range: 259772 -> 261844 23 : TyrValThrLysHisAsnLysTrpIleLeuAsnCysIleGlyIleTrpPro<-><->T : 40 ||| ! !:!! !|||::!|||.!!|||!!. |||||| !|||||| : TyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerS 259773 : TATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCAT : 259830 41 : hrValLeuLysGlyMetSerLysPheLeuProLysLeuValIleGlyPheSerAsnLe : 59 !! ! !! !!:!:..!|||.!!:!! !! :!!:!!||| !.!!!!! !! erSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSe 259831 : CCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAG : 259887 60 : uMetProSerPheIleIleValGlnCysValLeuTyrIleValLeuGluGluLysAsn : 78 !! ! ! !!! !:!::!!! !|||||||||:!!!!::!!||||||:!!:!!!:! rThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSer 259888 : TACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGT : 259944 79 : ProLeuLeuArgLeuArgPheCysSerLeuAlaTrpTyrSerLeuIleAsnLeuMetL : 98 !! !:!!!:! !!:! ! !.!!! ! ! :!!!!!!!!:!!..!! !!!:! LeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleA 259945 : TTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTA : 260004 99 : ysTyrTrpAlaLeuIleAlaArgLysProAspIleGluTyrCysIleLysTrpMetGl : 117 !.||| .!!|||:!: !||| !|||||| !|||:!::!! :!!:! snTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGl 260005 : ATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGA : 260061 118 : nThrAspTrpLysGlnValGluPheGlnArgAsnArgMetLeuMetLeuLysTyrGly : 136 !!.!||||||!:! :!! ! :!!!:!:!!!:!! :!!||||||!:!|||!.! uAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAla 260062 : GAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCG : 260118 137 : LysIleGlyArgAspLeuThrIleTyrSerAlaValPheMetTyrSerAlaGlyMetC : 156 |||.!!|||||| !!:!!.!! !! !!!!|||!.!|||:!! ! .!!!.!! !:!!| LysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuC 260119 : AAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGT : 260178 157 : ysTyrThrThrIleMetGlnTyrGlyMetArg<->MetSerLeuLysGluAsnAsnAr : 174 ||!:! ! !:!!! ! !! .!!! ..! !!:..!:!! !.!..!.!..|| ysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrAr 260179 : GCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAG : 260235 175 : gThrLeuArgIleLeuValTyrProThrTyrSerGlyLeuPheAspIleGlnLysSer : 193 |! !:!!!.!:!:||| !! ! !!..!|||!.!! !|||.!.:!!:!:.!. ! ||| gIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSer 260236 : GATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGT : 260292 194 : ProValTyrGluIleValTyrValPheGlnCysIleTyrAlaPheThrCysIleSerV : 213 |||:!! !!||||||||| !||| ! |||! !:!!! !.!|||! ! ! !||| ProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerS 260293 : CCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGA : 260352 214 : alThrValGlyCysCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIl : 232 !||||||||| !! !.!!|||||||||:!!.!..!!.!!|||||||||||||||:! erThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLe 260353 : GCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTT : 260409 233 : eAspValValIleSerGlnLeuAspAspLeuValAspGlyThrPheSerLysLysSer : 251 ::!!|||:!!!!:..! !:!! !!:!!!||||||! !:!! !:!!:!|||!.! uAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLys 260410 : GAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAA : 260466 252 : SerAsnProAspThrArgLeuMetGluIleValLysHisHisIleArgIleLeuLysP : 271 !.! !||| !! !..!:!! ! !||||||:!!||||||:!:||| !|||! !! LysAlaProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeuThr* 260467 : AAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTCACGT : 260526 272 : heSerAlaMetIleGluThrValLeuGlnGluValCysPhePheAspPheIleGlyTh : 290 ..! !.!. ! ||| !!:!!!:! !! ! !|||.!. ! :!!|||:! **AspLeuPheAspIleThrPheValArg***ArgIlePheIleIleThrValGlySe 260527 : AAGATTTGTTTGATATTACTTTTGTACGATAAAGGATTTTTATAATTACGGTAGGATC : 260583 291 : rThrLeuLeuIleCysSer{Le} >>>> Target Intron 1 >>>> {u}Gln : 298 !|||:::::: {:!} 1109 bp {!} rThrIleIle***LysLeu{Il}++ -+{e}Tyr 260584 : Tactataatttgaaaatta{at}gt.........................tg{a}tat : 261716 299 : TyrLeuCysIleThrAspLeuGlnHisAsnAsnLysIleGlyLeuAlaThrTyrSerM : 318 :::... ::: !!:! ! .!..!.:!!! ! !..!|||:!!||||||! !| PhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheM 261717 : ttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCA : 261776 319 : etLeuLeuIleGlyPheThrValAsnMetMetLeuLeuCysTyrIleGlyAsnLeuLe : 337 ||:!!||||||!.!.!! ! !!|||:!:.!.:!!:!!||||||||||||.!.:!!|| etMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLe 261777 : TGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACT : 261833 338 : uMetGluLys : 340 |! !|||:!! uThrGluGln 261834 : AACGGAACAG : 261844 vulgar: gi|815911912|ref|XP_012241397.1| 22 340 . KQ414889.1 259772 261844 + 331 M 17 51 G 0 6 M 127 381 G 0 3 M 130 390 S 0 2 5 0 2 I 0 1105 3 0 2 S 1 1 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259773 261844 331 + . gene_id 6 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259773 260605 . + . KQ414889.1 exonerate:protein2genome:local exon 259773 260605 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260606 260607 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 260606 261714 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261713 261714 . + . intron_id 0 ; splice_site "tg" KQ414889.1 exonerate:protein2genome:local cds 261715 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261715 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259773 261844 331 + . alignment_id 6 ; Query gi|815911912|ref|XP_012241397.1| ; Align 259773 23 51 ; Align 259830 40 381 ; Align 260214 167 390 ; Align 261716 298 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 322 Query range: 15 -> 271 Target range: 221357 -> 222131 16 : AsnTyrLysGluAspIleIleTyrValThrLysHisAsnLysTrpIleLeuAsnCysI : 35 :!!|||||| !:!!:!:! !! !..!:!! !:!:::|||||||||!!. | AspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProI 221358 : GATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGA : 221415 36 : leGlyIleTrpProThrVal<-><->LeuLysGlyMetSerLysPheLeuProLysLe : 52 |||||:!!||||||!.! ! :!!... !:!:..!!:!!:!||| ! !|| leGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLe 221416 : TCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 53 : uValIleGlyPheSerAsnLeuMetProSerPheIleIleValGlnCysValLeuTyr : 71 |:!!! !! ! !!!!! !! !:!! !!!!|||:!!:!:|||! ||| !|||||| uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 72 : IleValLeuGluGluLysAsnProLeuLeuArgLeuArgPheCysSerLeuAlaTrpT : 91 :!::!!||||||! !:!!:!! !! ! !|||:!!!:!!!.! .!!! ! ! ! ! ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 92 : yrSerLeuIleAsnLeuMetLysTyrTrpAlaLeuIleAlaArgLysProAspIleGl : 110 :!!!!:!!!!: !!!:!:|||||| !|||||| ! !:!! !||||||.. heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 111 : uTyrCysIleLysTrpMetGlnThrAspTrpLysGlnValGluPheGlnArgAsnArg : 129 . ! ||||||:!! ! !!::!! !|||||||||.!.:!! !:!...!:!:!!!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 130 : MetLeuMetLeuLysTyrGlyLysIleGlyArgAspLeuThrIleTyrSerAlaValP : 149 :!!|||:!!:!! !!!.!! .!!|||||| |||! !!!: !!!!.!! !!| AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 150 : heMetTyrSerAlaGlyMetCysTyrThrThrIleMetGlnTyrGlyMet<->ArgMe : 167 |||||||||||... ::: ||| ! !!!:! !!:!.!!:!! !:!!! heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 168 : tSerLeuLysGluAsnAsnArgThrLeuArgIleLeuValTyrProThrTyrSerGly : 186 : !! !:!!!!: ||| |||... !:!!|||!:!||| !! !!! ! eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 187 : LeuPheAspIleGlnLysSerProValTyrGluIleValTyrValPheGlnCysIleT : 206 :!! !!|||! !!:! ! ||||||||| !!||||||:!!!:! !.!!||| !!!: IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 207 : yrAlaPheThrCysIleSerValThrValGlyCysCysGlyLeuAlaAlaLeuPheAl : 225 !.! ! ! !|||:!!||| !!.!..!|||.!!|||!.!|||:!!||||| laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 226 : aThrHisAlaCysGlyGlnIleAspValValIleSerGlnLeuAspAspLeuValAsp : 244 |..!|||||||||||||||!!:.!.|||:!!!!:||| !||| ! !!|||:!!:!! aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 245 : GlyThrPheSerLysLysSerSerAsnProAspThrArgLeuMetGluIleValLysH : 264 ||| ! :!! ! ! !!!!!:!||| !|||! !|||:!! !:!!||||||!!.! GlyArg---AlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnG 222052 : GGCCGG---GCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATC : 222108 265 : isHisIleArgIleLeuLysPhe : 271 !.|||:!!|||||||||:!!!:! lnHisValArgIleLeuGlnTyr 222109 : AACACGTTCGAATATTGCAGTAT : 222131 vulgar: gi|815911912|ref|XP_012241397.1| 15 271 . KQ414889.1 221357 222131 + 322 M 26 78 G 0 6 M 124 372 G 0 3 M 81 243 G 1 0 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221358 222131 322 + . gene_id 7 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221358 222131 . + . KQ414889.1 exonerate:protein2genome:local exon 221358 222131 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221358 222131 322 + . alignment_id 7 ; Query gi|815911912|ref|XP_012241397.1| ; Align 221358 16 78 ; Align 221442 42 372 ; Align 221817 166 243 ; Align 222060 248 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 321 Query range: 2 -> 271 Target range: 212812 -> 213625 3 : ProSerIleArgSerGlnThrAspGlnSerArgAsnProAsnTyrLysGluAspIleI : 22 |||.!! !!:!..!:!!! ! ||| !..!:!! !!.!|||:!!:!! ::: ProGlyGlyLysAspGluLysLeuGlnValGluAspCysThrTyrGluLysArgValA 212813 : CCGGGAGGAAAAGATGAGAAATTGCAGGTCGAAGACTGTACCTACGAGAAACGtgtaa : 212870 23 : leTyrValThrLysHisAsnLysTrpIleLeuAsnCysIleGlyIleTrpPro<-><- : 40 ! |||:::|||:!!|||!!. ! |||:!:|||||| snLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspLy 212871 : atttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACAA : 212927 41 : >ThrValLeuLysGlyMetSerLysPheLeuProLysLeuValIleGlyPheSerAsn : 58 :!! !:!!..! !!!:..!||| !:!! !!::!||||||! ! ! !!!!! !! sSerTyrValSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTyr 212928 : GTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTAC : 212984 59 : LeuMetProSerPheIleIleValGlnCysValLeuTyrIleValLeuGluGluLysA : 78 !:!! !.!!!:!:!!:!!:!!! !||| !||||||:!: !!|||!!:! !:::| GlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGluA 212985 : GGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgaga : 213044 79 : snProLeuLeuArgLeuArgPheCysSerLeuAlaTrpTyrSerLeuIleAsnLeuMe : 97 || ... ...:!!..!!!.! !.!!:!! ! !:!!!!:!! ! ||| snIlePheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTr 213045 : atatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTG : 213101 98 : tLysTyrTrpAlaLeuIleAlaArgLysProAspIleGluTyrCysIleLysTrpMet : 116 !|||||| :!!|||||| !!.! !||||||... |||:!!:!! ||| pLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMet 213102 : GAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATG : 213158 117 : GlnThrAspTrpLysGlnValGluPheGlnArgAsnArgMetLeuMetLeuLysTyrG : 136 :!! !|||||||||.!.:!! ! !:!!..!:!!!:! :!!||| ! ! !!! LysTyrAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsnA 213159 : AAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACG : 213218 137 : lyLysIleGlyArgAspLeuThrIleTyrSerAlaValPheMetTyrSerAlaGlyMe : 155 .!!...!!|||!:! :!!..!! ! !!!!||| !!|||||||||!!!!.! !! laSerPheGlyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheTh 213219 : CGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCAC : 213275 156 : tCysTyrThrThrIleMetGlnTyrGlyMet<->ArgMetSerLeuLysGluAsnAsn : 173 !! !||| ! !:!!:!:! ! !.!! ! !:!||| ! !:!!!!: !||| rPheTyrPheLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAsn 213276 : GTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAAC : 213332 174 : ArgThrLeuArgIleLeuValTyrProThrTyrSerGlyLeuPheAspIleGlnLysS : 193 !|||!!!||| !:!!||| !|||..!! !!! !:!! !!|||:!!!:! ! | ValThrPheArgGlnMetValValProValSerArgPheIleValAspValArgTyrS 213333 : GTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACA : 213392 194 : erProValTyrGluIleValTyrValPheGlnCysIleTyrAlaPheThrCysIleSe : 212 |||||||| !!|||||| !!!:!:!!.!!||| !||| !!.! ! ! ! !:! erProValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAl 213393 : GTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGC : 213449 213 : rValThrValGlyCysCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGln : 231 !:!!.!!|||! !..!|||.!!|||||||||:!!||||||..!||||||||||||||| aIleAlaValValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGln 213450 : TATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAG : 213506 232 : IleAspValValIleSerGlnLeuAspAspLeuValAspGlyThrPheSerLysLysS : 251 !!:! !:!!:!!!!:||| !|||!!: !!|||:!!||||||! ! ..! ! ! !| MetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGlyArg---GluAspMetS 213507 : ATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGTAGA---GAGGATATGA : 213563 252 : erSerAsnProAspThrArgLeuMetGluIleValLysHisHisIleArgIleLeuLy : 270 ||!.!||| !||| !|||:!! !! ||||||!!.!!.|||:!:||||||||||| erLysAsnValAspAspArgIleAlaValIleValAsnGlnHisValArgIleLeuLy 213564 : GCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTGAA : 213620 271 : sPhe : 271 |!:: sTrp 213621 : GTGG : 213625 vulgar: gi|815911912|ref|XP_012241397.1| 2 271 . KQ414889.1 212812 213625 + 321 M 37 111 G 0 6 M 126 378 G 0 3 M 81 243 G 1 0 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212813 213625 321 + . gene_id 8 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212813 213625 . + . KQ414889.1 exonerate:protein2genome:local exon 212813 213625 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212813 213625 321 + . alignment_id 8 ; Query gi|815911912|ref|XP_012241397.1| ; Align 212813 3 111 ; Align 212930 40 378 ; Align 213311 166 243 ; Align 213554 248 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 321 Query range: 15 -> 271 Target range: 232438 -> 233212 16 : AsnTyrLysGluAspIleIleTyrValThrLysHisAsnLysTrpIleLeuAsnCysI : 35 ||| !! !..!||| ! ||| !! !:!! |||:::|||.!!|||!.. ! AsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProM 232439 : AACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGA : 232496 36 : leGlyIleTrpProThrValLeuLys<-><->GlyMetSerLysPheLeuProLysLe : 52 !:||| !|||||| !||| !:!! !! ..!:!!.!.||| !!||||| etGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLe 232497 : TGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACT : 232553 53 : uValIleGlyPheSerAsnLeuMetProSerPheIleIleValGlnCysValLeuTyr : 71 |:!!! ! ! !!!!:!!! !:!! !! !! ! ||||||! !|||:!!|||!:! uLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPhe 232554 : GTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTC : 232610 72 : IleValLeuGluGluLysAsnProLeuLeuArgLeuArgPheCysSerLeuAlaTrpT : 91 |||:!!!!!|||!!:! !!:!! ! ! !|||:!!!:!! ! !.!!! ! ! ! : IleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerH 232611 : ATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTC : 232670 92 : yrSerLeuIleAsnLeuMetLysTyrTrpAlaLeuIleAlaArgLysProAspIleGl : 110 !!! !|||!!:..! !:!!!!.|||!! ..!|||:!:|||!:! ! !|||||| isPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLe 232671 : ACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCT : 232727 111 : uTyrCysIleLysTrpMetGlnThrAspTrpLysGlnValGluPheGlnArgAsnArg : 129 ||||||:!::!! !:!!:!! !||||||::!.!.|||:!! ! !:!!||| uTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArg 232728 : CTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGT : 232784 130 : MetLeuMetLeuLysTyrGlyLysIleGlyArgAspLeuThrIleTyrSerAlaValP : 149 |||||||||||| !!!.!|||:!!||||||...:!!.!! ! !:!!||| !!! AspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheC 232785 : GATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTT : 232844 150 : heMetTyrSerAlaGlyMetCysTyrThrThrIleMetGlnTyrGlyMetArgMetSe : 168 !|||:!!!!!!.!! ! ! ! !! !! !:!!! ! ! !!|||!!!! !! ysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPh 232845 : GCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTT : 232901 169 : rLeuLysGluAsn<->AsnArgThrLeuArgIleLeuValTyrProThrTyrSerGly : 186 !! ! !! !||| !:! !:!!:!! ! ||| !! ! !! !|||!!! ! eTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLys 232902 : CTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAG : 232958 187 : LeuPheAspIleGlnLysSerProValTyrGluIleValTyrValPheGlnCysIleT : 206 |||.!.|||! !::! ||||||..! !!||||||:!!!:!|||.!.||||||:!!! LeuMetAspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuS 232959 : CTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCT : 233018 207 : yrAlaPheThrCysIleSerValThrValGlyCysCysGlyLeuAlaAlaLeuPheAl : 225 !!.!|||! ! ! !|||||||||||||||..!|||||||||!.!|||:!!.!.|| erGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAl 233019 : CCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGC : 233075 226 : aThrHisAlaCysGlyGlnIleAspValValIleSerGlnLeuAspAspLeuValAsp : 244 |! !|||||||||||||||:!::!!||||||!!:|||:!!|||||||||||||||||| aMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAsp 233076 : GATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGAC : 233132 245 : GlyThrPheSerLysLysSerSerAsnProAspThrArgLeuMetGluIleValLysH : 264 !.!! ! .!!:!!:!!..!!!! ! !!.!.! !!:!||| ||||||:!!| AlaLys---GlyGlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluH 233133 : GCGAAA---GGGCAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGC : 233189 265 : isHisIleArgIleLeuLysPhe : 271 |||||:!:|||! !|||!:!!:! isHisLeuArgThrLeuArgTyr 233190 : ATCATTTGCGTACATTAAGGTAT : 233212 vulgar: gi|815911912|ref|XP_012241397.1| 15 271 . KQ414889.1 232438 233212 + 321 M 28 84 G 0 6 M 129 387 G 0 3 M 74 222 G 1 0 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232439 233212 321 + . gene_id 9 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232439 233212 . + . KQ414889.1 exonerate:protein2genome:local exon 232439 233212 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 232439 233212 321 + . alignment_id 9 ; Query gi|815911912|ref|XP_012241397.1| ; Align 232439 16 84 ; Align 232529 44 387 ; Align 232919 173 222 ; Align 233141 248 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 317 Query range: 7 -> 270 Target range: 289690 -> 290482 8 : GlnThrAspGlnSerArgAsnProAsnTyrLysGluAspIleIleTyrValThrLysH : 27 ...!:!|||!:: !! !||| !..!|||:!! !|||||| !|||..! !:!! SerSerAspArgProSerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluL 289691 : AGCAGCGATCGTCCGTCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAAT : 289748 28 : isAsnLysTrpIleLeuAsnCysIleGlyIleTrpProThrValLeuLysGlyMetSe : 46 ! ! |||||||||!!. ||||||!!:!::||| !|||!!!!.. !! !|| euCysHisTrpIleLeuLysProIleGlyMetTyrProPheValPheSerArgAlaSe 289749 : TATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAG : 289805 47 : r<-><-><->LysPheLeuProLysLeuValIleGlyPheSerAsnLeuMetProSer : 62 | ::! ! !! !|||:!!||| ! ! !!! !! !!!:! !..! rArgArgGluArgThrAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGln 289806 : CAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAG : 289862 63 : PheIleIleValGlnCysValLeuTyrIleValLeuGluGluLysAsnProLeuLeuA : 82 ||||||||||||! !! ! !! !:!!:!!:!!!!!...!!:!!.:!! ! ! ! PheIleIleValProPheSerHisHisValLeuPheSerAspAsnAspMetAsnThrP 289863 : TTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGT : 289922 83 : rgLeuArgPheCysSerLeuAlaTrpTyrSerLeuIleAsnLeuMetLysTyrTrpAl : 101 !:!!!:! ! !.!!! ! ! !!:!!!!|||! !!..!!!.!.||||||!! heValLysAsnLeuGlyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTy 289923 : TCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTA : 289979 102 : aLeuIleAlaArgLysProAspIleGluTyrCysIleLysTrpMetGlnThrAspTrp : 120 !!!!! ! !!:! !!! |||! !|||:!:||| !!::!!! !|||||| rPheSerMetLysGlySerAlaIleGlyArgCysValLysHisIleGluArgAspTrp 289980 : CTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGG : 290036 121 : LysGlnValGluPheGlnArgAsnArgMetLeuMetLeuLysTyrGlyLysIleGlyA : 140 |||..!:!!... !:!! !:!!|||:!::!!||||||!:!|||! !! !!!:.!!| LysMetLeuArgAspGluAspHisArgValIleMetLeuArgTyrValThrMetSerA 290037 : AAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCC : 290096 141 : rgAspLeuThrIleTyrSerAlaValPheMetTyrSerAlaGlyMetCysTyrThrTh : 159 ||:!!|||! !! ! !!!|||:!!|||:!!|||! !!.!|||:!!! !|||!.!|| rgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnTh 290097 : GGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACAC : 290153 160 : rIleMetGlnTyrGlyMetArgMetSerLeuLysGluAsnAsnArgThrLeuArgIle : 178 |:!!!!:! !! ! !!:!! !|||:!! .!...!||| !|||:!!||| ! rValIleProLeuPheSerLysLysSerVal---AsnGlyAsnValThrIleArgPro 290154 : TGTCATACCGTTGTTCTCGAAGAAGAGCGTG---AACGGTAACGTGACTATCAGACCT : 290207 179 : LeuValTyrProThrTyrSerGlyLeuPheAspIleGlnLysSerProValTyrGluI : 198 |||..!|||||| !|||..!! !!!!||||||:!!||||||||||||!.!||||||| LeuThrTyrProGlyTyrGluGluPhePheAspValGlnLysSerProAlaTyrGluI 290208 : CTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGA : 290267 199 : leValTyrValPheGlnCysIleTyrAlaPheThrCysIleSerValThrValGlyCy : 217 |||||!:! !.!.!!.|||:!!|||!.!.!.! ! !:!:!!|||:!!!.!.. leValPheCysMetHisCysValTyrValMetIleThrAlaAsnIleThrMetAlaAl 290268 : TCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGC : 290324 218 : sCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspValValIle : 236 .! !.!!|||.!!.!!:!!||||||||||||.!!|||||||||||| ! :!! !! aTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThr 290325 : GTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACG : 290381 237 : SerGlnLeuAspAspLeuValAspGlyThrPheSerLysLysSerSerAsnProAspT : 256 !!!!:!|||!!:||||||..! ! !! !.!. ! !:!!!.!.!! !||| ThrArgLeuGluAspLeuThrLysArgGlyMetLeuLeuGluLysGlyValSerAsp- 290382 : ACGCGGCTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGAT- : 290441 257 : hrArgLeuMetGluIleValLysHisHisIleArgIleLeuLys : 270 |||||| !! :!!|||!.. !|||:!:..!||||||||| --ArgLeuAlaValValValSerGlyHisValGluIleLeuLys 290442 : --CGTTTGGCGGTTGTTGTGAGCGGTCACGTGGAGATCTTGAAG : 290482 vulgar: gi|815911912|ref|XP_012241397.1| 7 270 . KQ414889.1 289690 290482 + 317 M 39 117 G 0 9 M 123 369 G 1 0 M 85 255 G 1 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289691 290482 317 + . gene_id 10 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289691 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289691 290482 . + . insertions 9 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289691 290482 317 + . alignment_id 10 ; Query gi|815911912|ref|XP_012241397.1| ; Align 289691 8 117 ; Align 289817 47 369 ; Align 290186 171 255 ; Align 290441 257 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 293 Query range: 15 -> 270 Target range: 226909 -> 227680 16 : AsnTyrLysGluAspIleIleTyrValThrLysHisAsnLysTrpIleLeuAsnCysI : 35 :!!|||:!!||| !!:!:! ! !! !:!! |||:::|||:!:|||!!. : AspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProL 226910 : GACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCAC : 226967 36 : leGlyIleTrpProThrValLeuLysGly<-><->MetSerLysPheLeuProLysLe : 52 !!||||||||||||:!! !! !|||.!! !!:.!!!:!! !!!! !! !|| euGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLe 226968 : TCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTT : 227024 53 : uValIleGlyPheSerAsnLeuMetProSerPheIleIleValGlnCysValLeuTyr : 71 |:!! ! !.!!!!! !! !:!! !|||||| :!:|||..! !!! !|||||| uMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyr 227025 : GATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTAC : 227081 72 : IleValLeuGluGluLysAsnProLeuLeuArgLeuArgPheCysSerLeuAlaTrpT : 91 :!:|||||||||! !|||..! !!! ! !! !|||!:!.!. !.!!! ! !! ! ValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerP 227082 : GTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCT : 227141 92 : yrSerLeuIleAsnLeuMetLysTyrTrpAlaLeuIleAlaArgLysProAspIleGl : 110 :!! ! !!!:::!|||:!:||||||! !|||! !!.!:!! !|||||| hePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLe 227142 : TCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCT : 227198 111 : uTyrCysIleLysTrpMetGlnThrAspTrpLysGlnValGluPheGlnArgAsnArg : 129 ! |||:!!:!! !!!!::!! !|||||||||.!.:!!..!!:!! !..!:!!||| uGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArg 227199 : CGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGA : 227255 130 : MetLeuMetLeuLysTyrGlyLysIleGlyArgAspLeuThrIleTyrSerAlaValP : 149 ! :!!|||:!!! !|||!.! ! !|||||| ! |||! !! ! !!!!.!! !!| AsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPheP 227256 : AACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTT : 227315 150 : heMetTyrSerAlaGlyMetCysTyrThrThrIleMetGlnTyrGlyMet<->ArgMe : 167 ||:!:!:!|||::: ::: ::: ! !:!!:!:! !..! !!!:! heValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerVa 227316 : TCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGT : 227372 168 : tSerLeuLysGluAsnAsnArgThrLeuArgIleLeuValTyrProThrTyrSerGly : 186 ::!! !:!!!!:...|||!.!!:!! !! ! :!! !!:!||| ! !.! ! lAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIle 227373 : TGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATC : 227429 187 : LeuPheAspIleGlnLysSerProValTyrGluIleValTyrValPheGlnCysIleT : 206 :!! !|||:!!!:: ! |||||| !! !!|||||| !!!:! ! ! |||! !:!! IleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValT 227430 : ATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAA : 227489 207 : yrAlaPheThrCysIleSerValThrValGlyCysCysGlyLeuAlaAlaLeuPheAl : 225 !.!.!!..!! !.!!|||||| !!.!..!|||.!!:!!|||||||||.!!|| hrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAl 227490 : CAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGC : 227546 226 : aThrHisAlaCysGlyGlnIleAspValValIleSerGlnLeuAspAspLeuValAsp : 244 |..!|||||||||||||||!!:!!:|||:!!:!:||| !|||! !!|||:!!||| aValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAsp 227547 : GGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGAC : 227603 245 : GlyThrPheSerLysLysSerSerAsnProAspThrArgLeuMetGluIleValLysH : 264 |||! ! :!! ! ! !|||!.!!..! !||| !|||:!! ...||||||! | GlyArg---AlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValThrH 227604 : GGCAGA---GCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTC : 227660 265 : isHisIleArgIleLeuLys : 270 |||||:!!|||||||||||| isHisValArgIleLeuLys 227661 : ACCACGTTCGAATATTGAAG : 227680 vulgar: gi|815911912|ref|XP_012241397.1| 15 270 . KQ414889.1 226909 227680 + 293 M 29 87 G 0 6 M 121 363 G 0 3 M 81 243 G 1 0 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226910 227680 293 + . gene_id 11 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226910 227680 . + . KQ414889.1 exonerate:protein2genome:local exon 226910 227680 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226910 227680 293 + . alignment_id 11 ; Query gi|815911912|ref|XP_012241397.1| ; Align 226910 16 87 ; Align 227003 45 363 ; Align 227369 166 243 ; Align 227612 248 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 291 Query range: 22 -> 270 Target range: 266637 -> 267390 23 : TyrValThrLysHisAsnLysTrpIleLeuAsnCysIleGlyIleTrpPro<-><->T : 40 ||| ! !:!! |||::!|||.!!|||!!. !|||||| !|||||| : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuS 266638 : TACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGT : 266695 41 : hrValLeuLysGlyMetSerLysPheLeuProLysLeuValIleGlyPheSerAsnLe : 59 !!:!! !... !:!:..!::!.!!:!! !! ! !:!!|||! !.!!!!! !!! erLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCy 266696 : CACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTG : 266752 60 : uMetProSerPheIleIleValGlnCysValLeuTyrIleValLeuGluGluLysAsn : 78 ! ! !|||! !:!!:!!! |||:!!!!!:!!:!!|||||||||!!::!!!:! sSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSer 266753 : CTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGT : 266809 79 : ProLeuLeuArgLeuArgPheCysSerLeuAlaTrpTyrSerLeuIleAsnLeuMetL : 98 !! ! !!:!:!!!:! ! ! !.!!! ! ! ! :!!!!!!!!:!!... !!!:! IleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleA 266810 : ATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTA : 266869 99 : ysTyrTrpAlaLeuIleAlaArgLysProAspIleGluTyrCysIleLysTrpMetGl : 117 !.||| .!!|||:!: !|||!.. !!!:|||... !|||:!!:!! ||||| snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 266870 : ACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCA : 266926 118 : nThrAspTrpLysGlnValGluPheGlnArgAsnArgMetLeuMetLeuLysTyrGly : 136 ||||||||||!:! ||| ! !..!:!!!:!..!:!!||||||||| !!!.! nThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAla 266927 : AACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCG : 266983 137 : LysIleGlyArgAspLeuThrIleTyrSerAlaValPheMetTyrSerAlaGlyMetC : 156 !:!||||||||| !!:!!.!!|||!:!!!!|||!.!|||||| ! !!!!.!! !:!: ArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuG 266984 : AGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCG : 267043 157 : ysTyrThrThrIleMetGlnTyrGlyMetArg<->MetSerLeuLysGluAsnAsnAr : 174 !!||| !..!|||! ! !!:! !|||!:! :!!..!:!! .!..!.!.!|| lyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrAr 267044 : GCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAG : 267100 175 : gThrLeuArgIleLeuValTyrProThrTyrSerGlyLeuPheAspIleGlnLysSer : 193 |! !:!!!.!:!:||| !! ! !!..!|||!.! !:!!.!!! :!!.!.! ||| gIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSer 267101 : GATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGC : 267157 194 : ProValTyrGluIleValTyrValPheGlnCysIleTyrAlaPheThrCysIleSerV : 213 |||..! !!||||||||| !|||! |||! !:!!! !.!|||! ! ! !||| ProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerS 267158 : CCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGA : 267217 214 : alThrValGlyCysCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIl : 232 !..!||||||..!! !.!!|||||||||:!!||||||.!!|||||||||||||||:! erValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLe 267218 : GCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCT : 267274 233 : eAspValValIleSerGlnLeuAspAspLeuValAspGlyThrPheSerLysLysSer : 251 :..!|||:!!!!:! ! !:!! ! !!:!!!|||:!! !!:!! ..!!..!!.!.! uSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLys 267275 : GAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAG : 267331 252 : SerAsnProAspThrArgLeuMetGluIleValLysHisHisIleArgIleLeuLys : 270 !:! ! ! ! !!:!:!! ! !:!!|||:!!||||||:!:|||:!!|||!:! AsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeuArg 267332 : AACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGAGG : 267390 vulgar: gi|815911912|ref|XP_012241397.1| 22 270 . KQ414889.1 266637 267390 + 291 M 17 51 G 0 6 M 127 381 G 0 3 M 104 312 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266638 267390 291 + . gene_id 12 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266638 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266638 267390 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266638 267390 291 + . alignment_id 12 ; Query gi|815911912|ref|XP_012241397.1| ; Align 266638 23 51 ; Align 266695 40 381 ; Align 267079 167 312 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 288 Query range: 22 -> 270 Target range: 262849 -> 263602 23 : TyrValThrLysHisAsnLysTrpIleLeuAsnCysIleGlyIleTrpPro<-><->T : 40 ||| ! !:!! |||::!|||:!:|||!!. |||||| !|||||| . TyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerA 262850 : TACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCG : 262907 41 : hrValLeuLysGlyMetSerLysPheLeuProLysLeuValIleGlyPheSerAsnLe : 59 !! !:!!..! !!|||..!::!.!!:!! ! |||:!!|||! ! !!!!! !!! laSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCy 262908 : CCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTG : 262964 60 : uMetProSerPheIleIleValGlnCysValLeuTyrIleValLeuGluGluLysAsn : 78 !:!: ! !! !! !:!!:!!! ! !:!!|||:!!||||||||||||! :!!||| sLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsn 262965 : TCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAAT : 263021 79 : ProLeuLeuArgLeuArgPheCysSerLeuAlaTrpTyrSerLeuIleAsnLeuMetL : 98 !! !:!!!:!|||!:! !! !.!!! ! ! ! ! !!!!!!:!!..!:!!!!:! PheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleA 263022 : TTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCA : 263081 99 : ysTyrTrpAlaLeuIleAlaArgLysProAspIleGluTyrCysIleLysTrpMetGl : 117 !.||| !|||:!: !!.!!.. !||||||:!! !|||:!::!! :!!|| snTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGl 263082 : ATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCA : 263138 118 : nThrAspTrpLysGlnValGluPheGlnArgAsnArgMetLeuMetLeuLysTyrGly : 136 | !|||||| ||| !..!:!!!:! :!!||||||||| !!!.! nGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAla 263139 : GGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCG : 263195 137 : LysIleGlyArgAspLeuThrIleTyrSerAlaValPheMetTyrSerAlaGlyMetC : 156 ||| !|||||| !!:!!.!! !! !!!!|||:!!|||||| ! !!!::! !|||| LysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetC 263196 : AAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGT : 263255 157 : ysTyrThrThrIleMetGlnTyrGlyMetArgMetSerLeuLysGluAsn<->AsnAr : 174 || ! ! !:!!! !!:! !! !:!:!!! ! ! ! ! ||| !.!|| ysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrAr 263256 : GCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAG : 263312 175 : gThrLeuArgIleLeuValTyrProThrTyrSerGlyLeuPheAspIleGlnLysSer : 193 |! !||||||!!:||| !! !|||..!|||!.!! !:!!.!! :!!.!.! !!:! gIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThrAsn 263313 : AATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAAT : 263369 194 : ProValTyrGluIleValTyrValPheGlnCysIleTyrAlaPheThrCysIleSerV : 213 |||..! !!|||||| !! !!.! |||! !:!:! !.!|||! ! !! !:!!. ProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaT 263370 : CCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGA : 263429 214 : alThrValGlyCysCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIl : 232 .!|||||||||..!! !|||:!!.!!|||:!!|||||| !|||||||||||||||:! hrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLe 263430 : CAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTT : 263486 233 : eAspValValIleSerGlnLeuAspAspLeuValAspGlyThrPheSerLysLysSer : 251 ::!!|||:!!!!:||| !:!! !!:!!!|||:!! !:!! ..!:!!!!.!.! uAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLys 263487 : GAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAG : 263543 252 : SerAsnProAspThrArgLeuMetGluIleValLysHisHisIleArgIleLeuLys : 270 !:! ! ! !|||..!:!! ! !||||||:!!||||||:!:|||:!!|||!:! AsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeuArg 263544 : AATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTGAGG : 263602 vulgar: gi|815911912|ref|XP_012241397.1| 22 270 . KQ414889.1 262849 263602 + 288 M 17 51 G 0 6 M 133 399 G 0 3 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262850 263602 288 + . gene_id 13 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262850 263602 . + . KQ414889.1 exonerate:protein2genome:local exon 262850 263602 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262850 263602 288 + . alignment_id 13 ; Query gi|815911912|ref|XP_012241397.1| ; Align 262850 23 51 ; Align 262907 40 399 ; Align 263309 173 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 286 Query range: 22 -> 270 Target range: 274383 -> 275136 23 : TyrValThrLysHisAsnLysTrpIleLeuAsnCysIleGlyIleTrpPro<-><->T : 40 ||| ! !:!! |||::!|||.!!|||!!. !|||||| |||||| : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaS 274384 : TACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCT : 274441 41 : hrValLeuLysGlyMetSerLysPheLeuProLysLeuValIleGlyPheSerAsnLe : 59 !! ! !! ! !.!...!::!.!!||| !! ! |||:::||| ... !!! erProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCy 274442 : CGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTG : 274498 60 : uMetProSerPheIleIleValGlnCysValLeuTyrIleValLeuGluGluLysAsn : 78 !.!. ! !! !! !:!!:!!! ! !!:!!!!!:!!|||:!!|||! !!!::!!!:! sPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGluSer 274499 : CTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGT : 274555 79 : ProLeuLeuArgLeuArgPheCysSerLeuAlaTrpTyrSerLeuIleAsnLeuMetL : 98 ! !! !|||!:!|||!:!!!. !.!!! ! ! ! :!!!!!!!!|||... !!!:! LeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleA 274556 : CTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTA : 274615 99 : ysTyrTrpAlaLeuIleAlaArgLysProAspIleGluTyrCysIleLysTrpMetGl : 117 !.||| .!!|||:!: !|||!.. !!!:|||... !|||:!::!! ||||| snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 274616 : ATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCA : 274672 118 : nThrAspTrpLysGlnValGluPheGlnArgAsnArgMetLeuMetLeuLysTyrGly : 136 ||||||||||!:! ||| ! !..!:!!!:!...:!!||||||||| !!!.! nThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsnAla 274673 : AACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCG : 274729 137 : LysIleGlyArgAspLeuThrIleTyrSerAlaValPheMetTyrSerAlaGlyMetC : 156 |||||||||||| !!:!!.!!|||!:!!!!|||!.!|||||| ! !!!!.!! !:!:| LysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuC 274730 : AAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCT : 274789 157 : ysTyrThrThrIleMetGlnTyrGlyMetArg<->MetSerLeuLysGluAsnAsnAr : 174 ||||| !..!|||! !!:! !|||!:! :!:..!:!! !.!..!.!.!|| ysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrAr 274790 : GTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAG : 274846 175 : gThrLeuArgIleLeuValTyrProThrTyrSerGlyLeuPheAspIleGlnLysSer : 193 ||||:!!!.!!!:||| !! ! !.!!|||!.! !:!! !!! :!:.!.! !||| gThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThrSer 274847 : AACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGT : 274903 194 : ProValTyrGluIleValTyrValPheGlnCysIleTyrAlaPheThrCysIleSerV : 213 |||..! !!||||||||| !!.!! |||! !:!:! !.!|||! ! ! !||| ProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerS 274904 : CCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGA : 274963 214 : alThrValGlyCysCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIl : 232 !.!!||||||...! !.!!|||||||||:!!||||||.!!||||||! !||||||:! erAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLe 274964 : GCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTT : 275020 233 : eAspValValIleSerGlnLeuAspAspLeuValAspGlyThrPheSerLysLysSer : 251 :..!|||:!!!!:! ! !:!! !!!:!!!|||:!! !:!! ...:::...... uSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsnLys 275021 : GAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaa : 275077 252 : SerAsnProAspThrArgLeuMetGluIleValLysHisHisIleArgIleLeuLys : 270 ::: ::!..!:!! ! !:!!|||:!!||||||:!:|||:!!|||!:! AsnValTyrPheSerGluIleGlyValValValGluHisHisLeuArgValLeuArg 275078 : aatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTCAGG : 275136 vulgar: gi|815911912|ref|XP_012241397.1| 22 270 . KQ414889.1 274383 275136 + 286 M 17 51 G 0 6 M 127 381 G 0 3 M 104 312 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274384 275136 286 + . gene_id 14 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274384 275136 . + . KQ414889.1 exonerate:protein2genome:local exon 274384 275136 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274384 275136 286 + . alignment_id 14 ; Query gi|815911912|ref|XP_012241397.1| ; Align 274384 23 51 ; Align 274441 40 381 ; Align 274825 167 312 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 277 Query range: 279 -> 405 Target range: 280019 -> 280542 280 : GlnGluValCysPhePheAspPheIleGlyThrThrLeuLeuIleCysSerLeuGlnT : 299 .!.!!::!!|||!:!||| !!.!!:!! !.!!! !:!! !.!! !! !! !..!! AspAspLeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerL 280020 : GACGACTTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGT : 280077 300 : yrLeuCysIleThrAspLeuGlnHisAsnAsnLysIleGlyLeuAlaThrTyrSerMe : 318 ! ! !.!! !!!:! !:!!!!.|||:!! |||||| ! !||||||! !|| euSerValPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMe 280078 : TGTCAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAAT : 280134 319 : tLeuLeuIleGlyPheThrValAsnMetMetLeuLeuCysTyrIleGlyAsnLeuLeu : 337 |!!!||||||..!!!.||| !!|||:!:.!.:!!|||||||||||||||.!.:!!||| tPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeu 280135 : GTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTC : 280191 338 : MetGluLys >>>> Target Intron 1 >>>> SerThrSerValGlyIleSe : 347 |||::: 74 bp !!! !!.!||||||:!:|| SerGluGln++ ++CysLeuLysValGlyValSe 280192 : TCCGAACaggt.........................agTGCTTAAAAGTCGGCGTGTC : 280295 348 : rCysTyrMetIleGluTrpTyrArgLeuProGlyLysThrMetGlnGlyLeuIleLeu : 366 | !|||||||||!!:|||||||||||||||||||||! ! ||||||||||||||| rThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeu 280296 : AACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTG : 280352 367 : IleSerAlaMetSerAsnSerProAlaLysIleSerAlaGlyArgIlePheLeuLeuS : 386 |||! !|||:!!||||||||| !! !|||:!!!!!||||||!:!|||.!! !|||| IlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuS 280353 : ATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCT : 280412 387 : erLeuProAlaPheGlyAsn >>>> Target Intron 2 >>>> IleLeuLys : 395 ||||| !::!||| !!!:! 71 bp :!:|||||| erLeuSerSerPheCysSer++ ++ValLeuLys 280413 : CTTTAAGCAGCTTCTGCAGCgt.........................agGTGTTAAAA : 280510 396 : ThrSerPheAlaTyrLeuAsnPheValArg : 405 |||:!!||||||||||||!:!!!.:!!||| ThrAlaPheAlaTyrLeuSerLeuLeuArg 280511 : ACGGCATTCGCATATCTGAGCTTATTACGT : 280542 vulgar: gi|815911912|ref|XP_012241397.1| 279 405 . KQ414889.1 280019 280542 + 277 M 61 183 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280020 280542 277 + . gene_id 15 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280020 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280020 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280542 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280542 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280020 280542 277 + . alignment_id 15 ; Query gi|815911912|ref|XP_012241397.1| ; Align 280020 280 183 ; Align 280277 341 156 ; Align 280504 393 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 271 Query range: 62 -> 270 Target range: 256778 -> 257405 63 : PheIleIleValGlnCysValLeuTyrIleValLeuGluGluLysAsnProLeuLeuA : 82 |||! !:!::!!! |||:!!|||:!!:!! !!|||!!:!!: ! !:! !! :::: PheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrMetL 256779 : TTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAcatga : 256836 83 : rgLeuArgPheCysSerLeuAlaTrpTyrSerLeuIleAsnLeuMetLysTyrTrpAl : 101 :::::::: ...! ! ! ! :!!!!!:!!|||!:!! ! !!.||| ! ysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrThrLe 256837 : aagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACACGTT : 256893 102 : aLeuIleAlaArgLysProAspIleGluTyrCysIleLysTrpMetGlnThrAspTrp : 120 !|||:!: !!:! ! !||||||...||||||:!!:!! !!::!!||||||||| uLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAspTrp 256894 : GCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGATTGG : 256950 121 : LysGlnValGluPheGlnArgAsnArgMetLeuMetLeuLysTyrGlyLysIleGlyA : 140 !:!..!|||..! :!!!:!:!!!:!...:!!|||:!!||| !!!.!!:!.!!|||| ArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheGlyA 256951 : AGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCGGTC : 257010 141 : rgAspLeuThrIleTyrSerAlaValPheMetTyrSerAlaGlyMetCysTyrThrTh : 159 || !!:!!.!!! !!:!!!!|||!.!.!!||| ! |||!.! ...|||::: .. rgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePheVa 257011 : GTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttcttcgt : 257067 160 : rIleMetGlnTyrGlyMetArgMetSerLeuLysGluAsnAsnArgThrLeu<->Arg : 177 ! ! ! ..!! !..!!!:! !! ! !! !|||.!.! !|||:!! ||| lSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleValArg 257068 : GTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTGCGA : 257124 178 : IleLeuValTyrProThrTyrSerGlyLeuPheAspIleGlnLysSerProValTyrG : 197 :!:||| ! ! !!..!|||!.! !|||!!.:!!:!!.!.:!!||||||..! !!| ValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrAsnG 257125 : GTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACG : 257184 198 : luIleValTyrValPheGlnCysIleTyrAlaPheThrCysIleSerValThrValGl : 216 |||||||| ! !!.!.||| ! ! :!!.!!! !...! !!!! !||||||.! luIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrValSe 257185 : AGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAG : 257241 217 : yCysCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspValVal : 235 ! ! !.!!|||||||||:!!|||||||||||||||! !||||||:!: !|||:!! rIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrValLeu 257242 : TATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTT : 257298 236 : IleSerGlnLeuAspAspLeuValAspGlyThrPheSerLysLysSerSerAsnProA : 255 !!:||| !:!! !!:!!!|||:!!! !:!! !:!::::::...::: ||| MetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheProP 257299 : ATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttcctt : 257358 256 : spThrArgLeuMetGluIleValLysHisHisIleArgIleLeuLys : 270 !! !!:!:!! ! !||||||:!!||||||:!!|||:!:|||!:! heLysGlnIleGlyValIleValGluHisHisLeuArgValLeuArg 257359 : tCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTGAGG : 257405 vulgar: gi|815911912|ref|XP_012241397.1| 62 270 . KQ414889.1 256778 257405 + 271 M 114 342 G 0 3 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256779 257405 271 + . gene_id 16 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256779 257405 . + . KQ414889.1 exonerate:protein2genome:local exon 256779 257405 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256779 257405 271 + . alignment_id 16 ; Query gi|815911912|ref|XP_012241397.1| ; Align 256779 63 342 ; Align 257124 177 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 265 Query range: 12 -> 242 Target range: 194141 -> 194831 13 : ArgAsnProAsnTyrLysGluAspIleIleTyrValThrLysHisAsnLysTrpIleL : 32 |||||| !||||||||| !|||! ! |||!.!..!::! ||| !:!!| ArgAsnValAsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuL 194142 : CGCAACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTC : 194199 33 : euAsnCysIleGlyIleTrpProThrValLeuLysGlyMetSerLysPheLeuProLy : 51 ||!.. |||||||||||||||! !! ! !... ! ..!!:! !!! !! ! euThrProIleGlyIleTrpProArgGluAspSerLeuArgAspArgValArgLeuPh 194200 : TAACACCGATCGGTATCTGGCCAAGGGAGGATTCTCTTCGCGACAGAGTCCGACTGTT : 194256 52 : sLeuValIleGlyPheSerAsnLeuMetProSerPheIleIleValGlnCysValLeu : 70 ! !! !||| ! ! ! !:!! !!!!|||:!!:!:|||! !|||:!! eAlaGlnThrGlyValValPheAlaLeuMetCysPheLeuLeuValProHisValIle 194257 : CGCTCAAACTGGCGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATC : 194313 71 : TyrIleValLeuGluGluLysAsnProLeuLeuArgLeuArgPheCysSerLeuAlaT : 90 |||! ! !!!!!!: :!!:!!! ! ! ! !:!!!:! ! !:!! ! ! TyrThrTyrPheAspCysGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnV 194314 : TACACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAG : 194373 91 : rpTyrSerLeuIleAsnLeuMetLysTyrTrpAlaLeuIleAlaArgLysProAspIl : 109 !!:!||||||:!: :!!!!:|||!:!|||.!!:!!|||!.!!.!!:! !!!:|| alPheSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnArgLysGluIl 194374 : TGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGAT : 194430 110 : eGluTyrCysIleLysTrpMetGlnThrAspTrpLysGlnValGluPheGlnArgAsn : 128 |..!!:!|||:!: ! !|||:!!|||.!.!::!:!.!.||||||! !:!!..!:!! eArgPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCysGluGluAsp 194431 : CAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGAT : 194487 129 : ArgMetLeuMetLeuLysTyrGlyLysIleGlyArgAspLeuThrIleTyrSerAlaV : 148 |||..!:!!||| !!!.! !!.!|||||||||||| !!!!|||! ! ! ! !! ArgGlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuG 194488 : CGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGG : 194547 149 : alPheMetTyrSerAlaGlyMetCysTyrThrThrIleMetGlnTyrGlyMetArgMe : 167 !.!! |||.!!!.!!.!:!! ||| !! !|||:!:! ! !..!! lyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluAr 194548 : GACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAG : 194604 168 : tSerLeuLysGluAsnAsnArgThrLeuArgIleLeuValTyrProThrTyrSerGly : 186 !! !:!!||||||:!!|||!!!|||! !! ! !||| !||| !!:! !!! !! ! gIleValLysGluAspAsnSerThrGlnIleProLeuProTyrLeuSerAsnTyrVal 194605 : GATTGTCAAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTT : 194661 187 : LeuPheAspIleGlnLysSerProValTyrGluIleValTyrValPheGlnCysIleT : 206 !!!|||! |||:!! ! ||||||:!!|||||||||..!!:!|||! ||| :!: PhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerGlnIleLeuI 194662 : TTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGA : 194721 207 : yrAlaPheThrCysIleSerValThrValGlyCysCysGlyLeuAlaAlaLeuPheAl : 225 !::! !! ! :!:|||..!!.! !||| !! !.!!|||!.!||| !.!! leSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIl 194722 : TTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTAT : 194778 226 : aThrHisAlaCysGlyGlnIleAspValValIleSerGlnLeuAspAspLeu : 242 !! !|||..!|||||| !.!!!!:|||..!! !!!!::!:!!!!: !:!! eMetHisCysCysGlyLeuPheGluValThrSerArgArgMetGluThrIle 194779 : TATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGATGGAGACTATT : 194831 vulgar: gi|815911912|ref|XP_012241397.1| 12 242 . KQ414889.1 194141 194831 + 265 M 230 690 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194142 194831 265 + . gene_id 17 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194142 194831 . + . KQ414889.1 exonerate:protein2genome:local exon 194142 194831 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194142 194831 265 + . alignment_id 17 ; Query gi|815911912|ref|XP_012241397.1| ; Align 194142 13 690 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 257 Query range: 22 -> 279 Target range: 236852 -> 237626 23 : TyrValThrLysHisAsnLysTrpIleLeuAsnCysIleGlyIleTrpProThrValL : 42 ||| ! !:!! |||::!||| :!!!!. !!||||||! !|||||| ! !!! TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheS 236853 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCT : 236910 43 : euLysGlyMetSerLysPheLeuProLysLeuValIleGlyPheSerAsnLeuMetPr : 61 !..!..!:!:..!!:! !:!! !!::!:!!:!!! !! !.!!!!! !! ! erSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIl 236911 : CGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAAT : 236967 62 : oSerPheIleIleValGlnCysValLeuTyrIleValLeuGluGluLysAsnProLeu : 80 ! !||| |||:!!! ||| !|||:!!:!!:!!||||||:!! !!.! !! ! eLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyr 236968 : ACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTAC : 237024 81 : LeuArgLeuArgPheCysSerLeuAlaTrpTyrSerLeuIleAsnLeuMetLysTyrT : 100 !!:!:!!!:!.!. !.!!! ! ! ! :!!!!!:!!.!! !:!!!!:!..||| ThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrT 237025 : ACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACA : 237084 101 : rpAlaLeuIleAlaArgLysProAspIleGluTyrCysIleLysTrpMetGlnThrAs : 119 !|||:!: !|||::: ! !|||...:!!! !.!!!!. |||:!!||||| hrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAs 237085 : CCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGA : 237141 120 : pTrpLysGlnValGluPheGlnArgAsnArgMetLeuMetLeuLysTyrGlyLysIle : 138 ||||!:! !..! :::......::: :::||||||||||||!.!|||.!! pTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPhe 237142 : TTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTT : 237198 139 : GlyArgAspLeuThrIleTyrSerAlaValPheMetTyrSerAlaGlyMetCysTyrT : 158 .!!||| !! !.!!|||! !!!!.!!:!!|||!!::!!.!!!.! !:!: ! ||| SerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrC 237199 : AGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATT : 237258 159 : hrThrIleMetGlnTyrGlyMetArgMetSerLeuLysGluAsnAsnArgThr<->Le : 176 !..!!!:! !! ! !! !! !:!: !:!! ! !|||!!.! !||| || ysValMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLe 237259 : GTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTT : 237315 177 : uArgIleLeuValTyrProThrTyrSerGlyLeuPheAspIleGlnLysSerProVal : 195 ||||:!:||| !! |||! !|||!.!||||||.!! :!!.!.! !!:! !!:!! uArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMet 237316 : GCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATG : 237372 196 : TyrGluIleValTyrValPheGlnCysIleTyrAlaPheThrCysIleSerValThrV : 215 !!!!:|||||| !:!!! |||! !:!!! !!.!|||! !...! !!:! !.!!: AsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaI 237373 : AACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGA : 237432 216 : alGlyCysCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspVa : 234 !!.!! ! .!!|||.!!::! !.!..!!:!!||||||! !||||||:!:..!|| leSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerVa 237433 : TCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGT : 237489 235 : lValIleSerGlnLeuAspAspLeuValAspGlyThrPheSerLysLysSerSerAsn : 253 ||||!!:! !..!:!!!!:|||!!!|||..!! !.!! !!!:! !!.!..!:!! lValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAsp 237490 : GGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGAT : 237546 254 : ProAspThrArgLeuMetGluIleValLysHisHisIleArgIleLeuLysPheSerA : 273 ! ! ! !..!:!! ! !||||||:!!.!.|||:!:|||:!:||||||! !. HisPheAspGluIleProThrIleValGluGluHisLeuArgValLeuLys***ValC 237547 : CATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAGTAT : 237606 274 : laMetIleGluThrValLeu : 279 .!:!!:!:!!: !:!!||| ysLeuLeuAspLeuIleLeu 237607 : GTTTGTTGGATTTGATTTTG : 237626 vulgar: gi|815911912|ref|XP_012241397.1| 22 279 . KQ414889.1 236852 237626 + 257 M 153 459 G 0 3 M 104 312 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236853 237626 257 + . gene_id 18 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236853 237626 . + . KQ414889.1 exonerate:protein2genome:local exon 236853 237626 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 236853 237626 257 + . alignment_id 18 ; Query gi|815911912|ref|XP_012241397.1| ; Align 236853 23 459 ; Align 237315 176 312 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 244 Query range: 7 -> 208 Target range: 294642 -> 295254 8 : GlnThrAspGlnSerArgAsnProAsnTyrLysGluAspIleIleTyrValThrLysH : 27 :!!! !|||::!!!!! !:!! !!.! !!!:!.!.|||:!: !! ! !|||: LysIleAspArgThrMetAspAspThrAsnArgAsnAspValAlaAsnSerLeuLysT 294643 : AAAATAGACAGAACCATGGACGATACTAACAGAAACGACGTGGCGAACAGCCTCAAGT : 294700 28 : isAsnLysTrpIleLeuAsnCysIleGlyIleTrpProThrValLeuLysGlyMetSe : 46 !! !::! !!:!:|||!!. ||||||:!!|||||| !:!!! !!.. !! || yrCysArgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrSerHisThrSe 294701 : ATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACAGTCACACCAG : 294757 47 : rLysPhe<-><-><->LeuProLysLeuValIleGlyPheSerAsnLeuMetProSer : 62 ||||.!. ||| !!! !:!!:!!|||!.!!::!!!!..|||! ! ! rLysLeuAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLeuThrValLeu 294758 : CAAACTGAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTTGACCGTACTG : 294814 63 : PheIleIleValGlnCysValLeuTyrIleValLeuGluGluLysAsnProLeuLeuA : 82 |||:!!:!!|||! !|||! !! !!:! !|||!!!.!.! |||||| |||: PheValLeuValProCysGlyTyrPheCysValPheHisValLysAsnValLysLeuL 294815 : TTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaacgtgaaattga : 294874 83 : rgLeuArgPheCysSerLeuAlaTrpTyrSerLeuIleAsnLeuMetLysTyrTrpAl : 101 :!:!!!:!.!! .!!! !!.! ||||||:!!:!!::!:!!:!:!:!||| ! .. ysMetLysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuArgTyrSerCy 294875 : aGATGAAACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCAGGTACAGCTG : 294931 102 : aLeuIleAlaArgLysProAspIleGluTyrCysIleLysTrpMetGlnThrAspTrp : 120 !|||:!! !!:!! !|||! .!!:!!:!!||||||:!! !!::!!!.!|||||| sLeuValLeuLysThrProAlaPheLysHisCysIleGluAspIleGluAsnAspTrp 294932 : TCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGAGAACGATTGG : 294988 121 : LysGlnValGluPheGlnArgAsnArgMetLeuMetLeuLysTyrGlyLysIleGlyA : 140 ||| !:!!!!: !! !..!:!!||| !:!!|||:!!||| !!!.!! !:!! !! LysLeuIleAspAsnProGluHisArgAlaIleMetIleLysAsnAlaMetValThrG 294989 : AAGTTGATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCGATGGTCACGC : 295048 141 : rgAspLeuThrIleTyrSerAlaValPheMetTyrSerAlaGlyMetCysTyrThrTh : 159 :! :!!|||:!! !! !.!!:!!.!.!!:||||||:!!!.!:!!! ||| !.! lnArgMetThrValAlaPheThrIleIleIleTyrSerSerAlaValSerTyrHisAl 295049 : AGAGGATGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGTCGTATCACGC : 295105 160 : rIleMetGlnTyrGlyMetArgMetSerLeuLysGluAsnAsnArgThrLeuArgIle : 178 !|||::: ::: ... ! ! !!!.:!!!!.|||!.!|||:!!||| aIleValProPhePheSerAsnAlaLeuGluAsnLysLysAsnAsnThrIleArgAla 295106 : CATTGtgccatttttttcaaacgctTTGGAGAACAAGAAGAATAATACGATTCGTGCG : 295162 179 : LeuValTyrProThrTyrSerGlyLeuPheAspIleGlnLysSerProValTyrGluI : 198 ||| ! !||| !|||..! !!!! ! ||| ! ! ...||||||..!||||||| LeuProIleProGlyTyrGluLeuPheValAspAlaTyrSerSerProThrTyrGluI 295163 : TTACCAATTCCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGTCCTACCTACGAGA : 295222 199 : leValTyrValPheGlnCysIleTyrAlaPhe : 208 ||:!! ..! !! ! !:!!|||:!!||| leIleArgThrHisLeuPheValTyrSerPhe 295223 : TCATAAGAACTCATCTCTTTGTTTACTCGTTC : 295254 vulgar: gi|815911912|ref|XP_012241397.1| 7 208 . KQ414889.1 294642 295254 + 244 M 41 123 G 0 9 M 160 480 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294643 295254 244 + . gene_id 19 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294643 295254 . + . KQ414889.1 exonerate:protein2genome:local exon 294643 295254 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294643 295254 244 + . alignment_id 19 ; Query gi|815911912|ref|XP_012241397.1| ; Align 294643 8 123 ; Align 294775 49 480 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 198 Query range: 167 -> 270 Target range: 300174 -> 300477 168 : SerLeuLysGluAsnAsnArgThrLeuArgIleLeuValTyrProThrTyrSerGlyL : 187 !!!! !|||..!.!.||| !|||! !!:! |||!.!|||||| !|||..! !!! ThrTyrLysArgGluAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpP 300175 : ACTTACAAAAGGGAGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGT : 300232 188 : euPheAspIleGlnLysSerProValTyrGluIleValTyrValPheGlnCysIleTy : 206 !!.!!|||! !|||! ||||||..!||||||||||||::: |||...|||.!! heIleAspThrGlnThrSerProThrTyrGluIleValPhePhePheHisCysPheAl 300233 : TTATCGATACACAAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGC : 300289 207 : rAlaPheThrCysIleSerValThrValGlyCysCysGlyLeuAlaAlaLeuPheAla : 225 |||.!.! ! !!:!||||||..!!.!...! !.!!|||||||||:!!|||!.! aAlaMetIleMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheVal 300290 : AGCGATGATCATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTC : 300346 226 : ThrHisAlaCysGlyGlnIleAspValValIleSerGlnLeuAspAspLeuValAspG : 245 |||||| !||||||||||||.!.:!! !!!::!!::!|||!!:|||||||||!!: ThrHisIleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluA 300347 : ACTCATATCTGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGA : 300406 246 : lyThrPheSerLysLysSerSerAsnProAspThrArgLeuMetGluIleValLysHi : 264 !!||| .!!:!!|||..!..!..!|||||| !! |||:!:! ||||||::! ! rgThr---GlyGluLysAspAspGlyProAspPro---LeuValValIleValArgAs 300407 : GGACG---GGAGAGAAGGACGACGGTCCTGATCCT---TTGGTCGTTATCGTTCGAGA : 300457 265 : sHisIleArgIleLeuLys : 270 !|||:!:!:!:!!|||!:! pHisValLysValLeuArg 300458 : TCACGTGAAGGTTTTAAGG : 300477 vulgar: gi|815911912|ref|XP_012241397.1| 167 270 . KQ414889.1 300174 300477 + 198 M 79 237 G 1 0 M 9 27 G 1 0 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300175 300477 198 + . gene_id 20 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 300175 300477 . + . KQ414889.1 exonerate:protein2genome:local exon 300175 300477 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 300175 300477 198 + . alignment_id 20 ; Query gi|815911912|ref|XP_012241397.1| ; Align 300175 168 237 ; Align 300412 248 27 ; Align 300439 258 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 169 Query range: 342 -> 406 Target range: 287069 -> 287261 343 : SerValGlyIleSerCysTyrMetIleGluTrpTyrArgLeuProGlyLysThrMetG : 362 !.!||||||:!:||| !|||||||||!!:|||||||||||||||||||||||| | LysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaG 287070 : AAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTC : 287127 363 : lnGlyLeuIleLeuIleSerAlaMetSerAsnSerProAlaLysIleSerAlaGlyAr : 381 |||||||||||||||||! !|||:!!||||||||| !! !|||:!!!!!||||||!: lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 287128 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 287184 382 : gIlePheLeuLeuSerLeuProAlaPheGlyAsnIleLeuLysThrSerPheAlaTyr : 400 !|||.!! !||||||||| !::!||| !!!:!:!: !! ! !!:!!!.:!!||| sIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 287185 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 287241 401 : LeuAsnPheValArgAsn : 406 ! !:!!!!. ||| TyrHisLeuTyrAspAsn 287242 : TATCATTTGTacgataat : 287261 vulgar: gi|815911912|ref|XP_012241397.1| 342 406 . KQ414889.1 287069 287261 + 169 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287070 287261 169 + . gene_id 21 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287070 287261 . + . KQ414889.1 exonerate:protein2genome:local exon 287070 287261 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287070 287261 169 + . alignment_id 21 ; Query gi|815911912|ref|XP_012241397.1| ; Align 287070 343 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 338 -> 405 Target range: 234982 -> 235254 339 : GluLysSerThrSerValGlyIleSerCysTyrMetIleGluTrpTyrArgLeuProG : 358 :!!:!!!!!|||!.!|||||| !!.! ||||||! !|||||||||||||||||| GlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProH 234983 : CAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTC : 235040 359 : lyLysThrMetGlnGlyLeuIleLeuIleSerAlaMetSerAsnSerProAlaLysIl : 377 !|||||| ! ||||||:!!:!!|||! !:!!! !|||!:!! ! ! !||||| isLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIl 235041 : ATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAAT : 235097 378 : eSerAlaGlyArgIlePheLeuLeuSerLeuProAlaPheGlyAsn >>>> Targe : 393 |!!!||||||!:!.!!.!.! !:!!|||:!! !!.!!||||||:!! eThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAsp++ 235098 : CACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATgt.......... : 235147 394 : t Intron 1 >>>> IleLeuLysThrSerPheAlaTyrLeuAsnPheValArg : 405 71 bp :!!!!!|||.!!||||||||||||!!!|||.!.:!!||| ++ValPheLysAlaSerPheAlaTyrPheAsnMetIleArg 235148 : ...............agGTATTTAAGGCGTCTTTCGCCTACTTCAACATGATCCGC : 235254 vulgar: gi|815911912|ref|XP_012241397.1| 338 405 . KQ414889.1 234982 235254 + 157 M 54 162 5 0 2 I 0 67 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234983 235254 157 + . gene_id 22 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234983 235144 . + . KQ414889.1 exonerate:protein2genome:local exon 234983 235144 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 235145 235146 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 235145 235215 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 235214 235215 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 235216 235254 . + . KQ414889.1 exonerate:protein2genome:local exon 235216 235254 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234983 235254 157 + . alignment_id 22 ; Query gi|815911912|ref|XP_012241397.1| ; Align 234983 339 162 ; Align 235216 393 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 186 -> 270 Target range: 202712 -> 203155 187 : LeuPheAspIleGlnLysSerProValTyrGluIleValTyrValPheGlnCysIleT : 206 :!!.!!|||:!!::! ! ||||||||| !!|||||| !!!:! !.!!!:! !:!! IleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleValA 202713 : ATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAG : 202770 207 : yrAlaPheThrCysIleSerValThrValGlyCysCysGlyLeuAlaAlaLeuPheAl : 225 !!.!.!! ! ! !.!!||||||||||||..!||| !!|||.!!||||||||||| laValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAl 202771 : CTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGC : 202827 226 : aThrHisAlaCysGlyGlnIleAspValValIleSerGlnLeuAspAspLeuValAsp : 244 |..!|||! !|||||||||!!:||||||:!!!!::!! !|||!!: !!|||:!!||| aValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMetAsp 202828 : GGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGAT : 202884 245 : GlyThrPheSerLys{L} >>>> Target Intron 1 >>>> {ys}SerSerA : 253 ||| !! ..!! !{!} 191 bp {!.}..!..!| GlyArgSerAspMet{A}++ +-{sn}GluGlnA 202885 : GGTCGTTCGGATATG{A}gt.........................at{AT}GAGCAAA : 203102 254 : snProAspThrArgLeuMetGluIleValLysHisHisIleArgIleLeuLys : 270 || !:!! !|||:!!:!! ||||||!..!!.|||||||||||||||||| snValAsnGlyArgMetValThrIleValSerGlnHisIleArgIleLeuLys 203103 : ATGTGAATGGCAGAATGGTGACCATCGTGAGCCAACACATACGGATACTGAAA : 203155 vulgar: gi|815911912|ref|XP_012241397.1| 186 270 . KQ414889.1 202712 203155 + 140 M 63 189 S 0 1 5 0 2 I 0 187 3 0 2 S 1 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202713 203155 140 + . gene_id 23 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 202713 202902 . + . KQ414889.1 exonerate:protein2genome:local exon 202713 202902 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 202903 202904 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 202903 203093 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 203092 203093 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 203094 203155 . + . KQ414889.1 exonerate:protein2genome:local exon 203094 203155 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202713 203155 140 + . alignment_id 23 ; Query gi|815911912|ref|XP_012241397.1| ; Align 202713 187 189 ; Align 203096 251 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 342 -> 407 Target range: 273023 -> 273299 343 : SerValGlyIleSerCysTyrMetIleGluTrpTyrArgLeuProGlyLysThrMetG : 362 ...:::||| ! !||||||! .!.|||||| !|||||||||||| !!!:! LysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProGlyLysAspIleL 273024 : aaaattggcGAGGTAGTTTACATGACGAACTGGTACTATTTACCCGGCAAAGATATCC : 273081 363 : lnGlyLeuIleLeuIleSerAlaMetSerAsnSerProAlaLysIleSerAlaGlyAr : 381 ! !||||||||||||! !:!!! !!!!:! ! ! !||||||!!!|||||||| euAspLeuIleLeuIleIleSerArgCysSerValValIleLysIleThrAlaGlyAr 273082 : TCGATCTGATTTTGATCATCTCAAGATGCAGTGTTGTGATTAAAATCACCGCTGGCAG : 273138 382 : gIlePheLeuLeuSerLeuProAlaPheGlyAsn >>>> Target Intron 1 > : 393 |||| !!! !:!!|||:!! !.!!||||||:!! 81 bp gIleValProMetSerValTyrThrPheGlyAsp++ 273139 : GATAGTTCCCATGTCTGTGTACACGTTCGGCGATgt...................... : 273176 394 : >>> IleLeuLysThrSerPheAlaTyrLeuAsnPheValArgAsnThr : 407 ::::!!|||!:!:!!|||||||||||||||.!.:!!|||.!.||| ++ValMetLysSerAlaPheAlaTyrLeuAsnMetLeuArgGlnThr 273177 : ...aggtGATGAAAAGTGCGTTCGCGTACTTAAATATGCTACGACAAACG : 273299 vulgar: gi|815911912|ref|XP_012241397.1| 342 407 . KQ414889.1 273023 273299 + 132 M 50 150 5 0 2 I 0 77 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 273024 273299 132 + . gene_id 24 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 273024 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273024 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273299 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273299 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 273024 273299 132 + . alignment_id 24 ; Query gi|815911912|ref|XP_012241397.1| ; Align 273024 343 150 ; Align 273255 393 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 335 -> 393 Target range: 214848 -> 215022 336 : LeuLeuMetGluLysSerThrSerValGlyIleSerCysTyrMetIleGluTrpTyrA : 355 :!!:!!:!::!!:!!!!!! !!.!|||||| ! !! ||||||||||||||||||| IleMetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrA 214849 : ATTATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACC : 214906 356 : rgLeuProGlyLysThrMetGlnGlyLeuIleLeuIleSerAlaMetSerAsnSerPr : 374 |||||||||||!!.! !! !! !!! !|||||||||! !||||||||||||||| ! rgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSe 214907 : GATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATC : 214963 375 : oAlaLysIleSerAlaGlyArgIlePheLeuLeuSerLeuProAlaPheGlyAsnIle : 393 !!.!|||.!!!!!||||||!.!!!: ! !||||||:!! !.!!|||.!!!:!:!! rValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214964 : CGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215020 vulgar: gi|815911912|ref|XP_012241397.1| 335 393 . KQ414889.1 214848 215022 + 129 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214849 215022 129 + . gene_id 25 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214849 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214849 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214849 215022 129 + . alignment_id 25 ; Query gi|815911912|ref|XP_012241397.1| ; Align 214849 336 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 335 -> 396 Target range: 211758 -> 211941 336 : LeuLeuMetGluLysSerThrSerValGlyIleSerCysTyrMetIleGluTrpTyrA : 355 |||:!!.!. !:!!!!!..!!.!|||||| !!.!! !|||||||||!!:||||||| LeuIlePhe***GlnThrValLysValGlyGluLysSerTyrMetIleAspTrpTyrA 211759 : CTCATATTTTGACAGACAGTAAAAGTTGGAGAAAAGTCTTACATGATCGACTGGTATC : 211816 356 : rgLeuProGlyLysThrMetGlnGlyLeuIleLeuIleSerAlaMetSerAsnSerPr : 374 ||:!!|||||||||! ! !! !:!! !|||!!:! !:!!||||||:!!||| ! rgMetProGlyLysLysGlyLeuValValProLeuMetIleSerMetSerHisSerTh 211817 : GAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGATGATCTCCATGTCACATTCGAC : 211873 375 : oAlaLysIleSerAlaGlyArgIlePheLeuLeuSerLeuProAlaPheGlyAsnIle : 393 !.!!||||||!!!||||||!.!:!!.!!:!!||||||:!! !::!||||||:!!:!! rThrLysIleThrAlaGlyAsnLeuIleValLeuSerIleSerSerPheGlyAspVal 211874 : CACCAAAATCACCGCTGGCAATCTCATCGTTCTTTCAATCAGTAGTTTCGGTGACGTA : 211930 394 : LeuLysThr : 396 ||| SerValThr 211931 : AGtgttaca : 211941 vulgar: gi|815911912|ref|XP_012241397.1| 335 396 . KQ414889.1 211758 211941 + 127 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 211759 211941 127 + . gene_id 26 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 211759 211941 . + . KQ414889.1 exonerate:protein2genome:local exon 211759 211941 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 211759 211941 127 + . alignment_id 26 ; Query gi|815911912|ref|XP_012241397.1| ; Align 211759 336 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 331 -> 393 Target range: 224472 -> 224658 332 : TyrIleGlyAsnLeuLeuMetGluLysSerThrSerValGlyIleSerCysTyrMetI : 351 |||.!! !:::|||!!!.!. ::: ...:::||| ! !! ||||||| TyrPheLeuSerLeuPhePheProGlnCysGluLysIleGlyGlnValSerTyrMetI 224473 : TATTTTTTATCGCTATTTTTTCCtcagtgtgaaaaaattggacaAGTGTCGTACATGA : 224530 352 : leGluTrpTyrArgLeuProGlyLysThrMetGlnGlyLeuIleLeuIleSerAlaMe : 370 ||!!:|||||||||||| !!|||!!.! !! ! ! !!! !|||||||||! !||||| leAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMe 224531 : TCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGAT : 224587 371 : tSerAsnSerProAlaLysIleSerAlaGlyArgIlePheLeuLeuSerLeuProAla : 389 |||||||||| !! !|||:!:!!!||||||!.!!!: !! !|||!!!||| !!.!! tSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThr 224588 : GTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACT : 224644 390 : PheGlyAsnIle : 393 ||||||:!!:!! PheGlyAspVal 224645 : TTCGGTGACGTA : 224658 vulgar: gi|815911912|ref|XP_012241397.1| 331 393 . KQ414889.1 224472 224658 + 119 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224473 224658 119 + . gene_id 27 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224473 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224473 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224473 224658 119 + . alignment_id 27 ; Query gi|815911912|ref|XP_012241397.1| ; Align 224473 332 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 336 -> 402 Target range: 292380 -> 292578 337 : LeuMetGluLysSerThrSerValGlyIleSerCysTyrMetIleGluTrpTyrArgL : 356 :!!:!! ! :!!.!!!:!..!:!!!.! !:!!! !||| ! !|||||||||!.!| ValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnL 292381 : GTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATC : 292438 357 : euProGlyLysThrMetGlnGlyLeuIleLeuIleSerAlaMetSerAsnSerProAl : 375 ||||| !!::!! ! !::! !:!!:!!|||:!: !|||!!:!!!!!. !||| euProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIl 292439 : TGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGAT : 292495 376 : aLysIleSerAlaGlyArgIlePheLeuLeuSerLeuProAlaPheGlyAsnIleLeu : 394 !|||:!!!!!||||||!:!||||||:!!||||||||| !.!!|||||| !:!!! ! eLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArg 292496 : CAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGT : 292552 395 : LysThrSerPheAlaTyrLeuAsn : 402 :!!:!!!.!.!.!.!! :!!:!! GluSerLysLeuValLeuIleHis 292553 : GAATCAAAACTAGTCTTGATACAC : 292578 vulgar: gi|815911912|ref|XP_012241397.1| 336 402 . KQ414889.1 292380 292578 + 115 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292381 292578 115 + . gene_id 28 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292381 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292381 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292381 292578 115 + . alignment_id 28 ; Query gi|815911912|ref|XP_012241397.1| ; Align 292381 337 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 342 -> 393 Target range: 219518 -> 219671 343 : SerValGlyIleSerCysTyrMetIleGluTrpTyrArgLeuProGlyLysThrMetG : 362 ...:::||| |||||||||||||||||||||||| !!||||||! !! !! LysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysLysL 219519 : aaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAAAGC : 219576 363 : lnGlyLeuIleLeuIleSerAlaMetSerAsnSerProAlaLysIleSerAlaGlyAr : 381 !! !:!!|||! !! !||||||||||||||| !! !|||:!:!!!||||||!. euTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAs 219577 : TCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGGAAA : 219633 382 : gIlePheLeuLeuSerLeuProAlaPheGlyAsnIle : 393 !!!: !! !||||||:!! !.!!||| !:!!:!: nMetValGluLeuSerIleSerThrPheThrAspVal 219634 : TATGGTCGAATTGTCTATCAGCACTTTTACCGACGTG : 219671 vulgar: gi|815911912|ref|XP_012241397.1| 342 393 . KQ414889.1 219518 219671 + 111 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219519 219671 111 + . gene_id 29 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219519 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219519 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219519 219671 111 + . alignment_id 29 ; Query gi|815911912|ref|XP_012241397.1| ; Align 219519 343 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 342 -> 402 Target range: 230253 -> 230433 343 : SerValGlyIleSerCysTyrMetIleGluTrpTyrArgLeuProGlyLysThrMetG : 362 !.!|||||| !!.!! |||||||||||||||||||||||| !!|||!!.! !! !! LysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyAsnLysLysL 230254 : AAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAAACAAGAAGC : 230311 363 : lnGlyLeuIleLeuIleSerAlaMetSerAsnSerProAlaLysIleSerAlaGlyAr : 381 !!! !|||||||||! !||||||||||||!!! !!.!!|||.!!!!!||||||!. euCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheThrAlaGlyAs 230312 : TCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTACAGCAGGAAA : 230368 382 : gIlePheLeuLeuSerLeuProAlaPheGlyAsnIleLeuLysThrSerPheAlaTyr : 400 !!!: !! !||||||:!! !.!!|||.!!:!!:!! !! ! !! !! !!.!||| nMetValGluLeuSerValAsnThrPheSerAspValSerIleIlePheSerValTyr 230369 : CATGGTTGAATTATCCGTAAACACTTTCAGCGACGTAAGTATCATATTCTCTGTTTAC : 230425 401 : LeuAsn : 402 !||| ThrAsn 230426 : ACGAAT : 230433 vulgar: gi|815911912|ref|XP_012241397.1| 342 402 . KQ414889.1 230253 230433 + 110 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230254 230433 110 + . gene_id 30 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230254 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230254 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230254 230433 110 + . alignment_id 30 ; Query gi|815911912|ref|XP_012241397.1| ; Align 230254 343 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 211 -> 245 Target range: 202982 -> 203084 212 : SerValThrValGlyCysCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyG : 231 .!!||||||||||||..!||| !!|||.!!||||||||||||..!|||! !||||||| GlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAlaValHisAspCysGlyG 202983 : GGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTATTTGCGGTTCACGATTGCGGCC : 203040 232 : lnIleAspValValIleSerGlnLeuAspAspLeuValAspGly : 245 ||!!:||||||:!!!!::!! !|||!!: !!|||:!!|||||| lnMetAspValLeuMetAlaTrpLeuGluHisLeuMetAspGly 203041 : AGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGATGGT : 203084 vulgar: gi|815911912|ref|XP_012241397.1| 211 245 . KQ414889.1 202982 203084 + 107 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202983 203084 107 + . gene_id 31 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202983 203084 . + . KQ414889.1 exonerate:protein2genome:local exon 202983 203084 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202983 203084 107 + . alignment_id 31 ; Query gi|815911912|ref|XP_012241397.1| ; Align 202983 212 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920792|ref|XP_012245313.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 201 -> 271 Target range: 292377 -> 293236 202 : LysLeuThrValGluSerThrGluIleAlaAsnThrAlaTyrAsnAlaGluTrpTyrA : 221 ::!:!! ! !:!!.!!!:!|||||||||:!!.!!:!!|||:!!.!!|||||||||| ArgValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrA 292378 : CGAGTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACA : 292435 222 : snLeuProProLysAsnAlaArgTrpLeuValIleIleMetCysArgAlaArgSerSe : 240 |||||||| !::!!!.|||||| :!!|||:!::!::!:..!! !.!!!:! snLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLys---Hi 292436 : ATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAA---CA : 292489 241 : rProLeuGlnIleThrAlaGlyArgPheCysCysPheThrLeuValLeuTyrSerGln : 259 !|||:!!:!!:!!|||||||||!:!.!.! ! !.!!:!!||| ! !!:!.!! sProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAla 292490 : TCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCT : 292546 260 : >>>> Target Intron 1 >>>> ValLeuLysThrSerMetGlyTyrValSe : 269 652 bp |||||||||:!!|||:!:! !|||:!!!: ++ ++ValLeuLysSerSerValValTyrMetAs 292547 : gt.........................agGTGCTGAAATCGTCGGTAGTTTACATGAA : 293228 270 : rValLeu : 271 !:!!||| nMetLeu 293229 : CATGCTA : 293236 vulgar: gi|815920792|ref|XP_012245313.1| 201 271 . KQ414889.1 292377 293236 + 111 M 37 111 G 1 0 M 20 60 5 0 2 I 0 648 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292378 293236 111 + . gene_id 1 ; sequence gi|815920792|ref|XP_012245313.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 292378 292548 . + . KQ414889.1 exonerate:protein2genome:local exon 292378 292548 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 292549 292550 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 292549 293200 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 293199 293200 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 293201 293236 . + . KQ414889.1 exonerate:protein2genome:local exon 293201 293236 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292378 293236 111 + . alignment_id 1 ; Query gi|815920792|ref|XP_012245313.1| ; Align 292378 202 111 ; Align 292489 240 60 ; Align 293201 260 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815914351|ref|XP_012242451.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 135 -> 201 Target range: 258462 -> 258729 136 : GluSerMetLysValSerGluAlaPheTyrAlaThrAspTrpAsnAsnLeuSerLeuH : 155 :!!!!!! !||||||.!!!!:!.! !!||| !||||||||| !! !!||| !! ! GlnCysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspL 258463 : CAGTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACA : 258520 156 : isAsnGlnLysLeuLeuLeuLeuValMetThrLeuGlyGlnGlnAsnLeuHisValTh : 174 ! !.. ! !|||:!!||||||!!:.!!! !..!... ! !:!!!!.:!!|| ysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleTh 258521 : AAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCAC : 258577 175 : rAlaGlyLysPheTyrThrPheSerLeuTyrGlyPheIleAla >>>> Target I : 189 |||||||||||||::: ...|||:!!||| !|||! !! ! 69 rAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAsp++ 258578 : CGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATgt............. : 258624 190 : ntron 1 >>>> ValMetLysThrSerPheGlyTyrValSerLeuLeuArg : 201 bp |||!!:||||||||||||!.!|||:!!!:!||||||||| ++ValIleLysThrSerPheAlaTyrLeuAsnLeuLeuArg 258625 : ............agGTAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGT : 258729 vulgar: gi|815914351|ref|XP_012242451.1| 135 201 . KQ414889.1 258462 258729 + 111 M 53 159 5 0 2 I 0 65 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258463 258729 111 + . gene_id 1 ; sequence gi|815914351|ref|XP_012242451.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 258463 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258463 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258729 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258729 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258463 258729 111 + . alignment_id 1 ; Query gi|815914351|ref|XP_012242451.1| ; Align 258463 136 159 ; Align 258691 189 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815923208|ref|XP_003493069.2| PREDICTED: putative odorant receptor 85d, partial [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 193 -> 295 Target range: 1677575 -> 1677887 194 : GlnIleLeuSerSerMetValCysAlaThrThrIleCysGlyLeuAspAlaSerPh : 212 ||||||!!! !!!!||| !! ! ! ! ! !|||!!!||||||||| GlnIlePheLeuCysMetTyrLeuLeuLeuCysTyrIleGlyPheAspAlaSerAl 1677576 : caGATTTTCCTCTGCATGTACTTGTTGCTATGCTACATCGGTTTCGACGCGTCAGC : 1677630 213 : eMetThrThrIleLeuHisValSerAlaGlnPheLysLeuIleAsnThrTrpIleS : 231 ..! !|||:!!|||!.!:!!||| !!|||!:!:!!:!!..! ! !:!:| aCysValLeuIleIleHisAlaAlaAla***PheArgIleLeuGlyArgLeuLeuS 1677631 : GTGTGTGCTGATAATACACGCGGCCGCATAATTCAGAATACTTGGCCGACTGCTGT : 1677687 232 : erAsnIleGlyThrGlu<-><->IleAsnCysAsnProAsnTyrThrArgLysIle : 247 || !!||| !|||||| !:!! .!. !!:! !!:!:!!!!: erTyrIlePheThrGluGluLeuTyrAspLysGluIleSerIleGlnLysGlnMet 1677688 : CATATATTTTCACCGAGGAACTTTACGATAAAGAGATTAGCATACAGAAGCAAATG : 1677741 248 : LysIleGluLeuMetArgCysIleArgHisHisGlnArgMetIleHisValValAs : 266 ..! :::... :::|||:!:|||!..||| ! !:!:||| !! !|||.! SerGlnLysPheGluLysCysLeuArgArgHisTyrLeuLeuIleAspTyrValGl 1677742 : TCGcagaaattcgagaaatgcTTGCGTCGACACTATTTGCTCATTGACTACGTAGA : 1677798 267 : nAspValAsnAsnLeuPheThrProIleIlePheMetGlnIleLeuThrSerGlyI : 285 .::::::||||||||||||! ! !! !:!!.!.:!:|||!!::!!||||||.!!: uGluLeuAsnAsnLeuPheLysTyrThrLeuLeuLeuGlnMetMetThrSerSerL 1677799 : GgaattgaataatttgttCAAATACACCCTTCTGTTACAGATGATGACCTCGAGTT : 1677855 286 : leGluIleCysLeuSerGlyTyrAlaMetLeu : 295 !: !||||||:!!|||||||||! ! ||| euLeuIleCysMetSerGlyTyrGluCysLeu 1677856 : TGTTAATCTGTATGTCTGGTTACGAATGTTTA : 1677887 vulgar: gi|815923208|ref|XP_003493069.2| 193 295 . KQ414915.1 1677575 1677887 + 131 M 43 129 G 0 6 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1677576 1677887 131 + . gene_id 1 ; sequence gi|815923208|ref|XP_003493069.2| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1677576 1677887 . + . KQ414915.1 exonerate:protein2genome:local exon 1677576 1677887 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1677576 1677887 131 + . alignment_id 1 ; Query gi|815923208|ref|XP_003493069.2| ; Align 1677576 194 129 ; Align 1677711 237 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920800|ref|XP_003492337.2| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 89 -> 187 Target range: 1681947 -> 1682241 90 : GlnValIleAlaGlyTyrSerAlaThrIleCysTyrThrThrValAspThrPheIl : 108 |||..!:!!:!!! ! !:!! !||||||!:! ! ! !!|||!.!|||:! GlnThrLeuSerValValHisSerGlyIleCysPheCysCysPheAspAsnPheLe 1681948 : CAGACATTATCTGTGGTGCATTCGGGAATTTGTTTCTGTTGTTTCGACAATTTCCT : 1682002 109 : eAlaMetLeuValLeuHisIleCysGlyGlnPheGluIleLeuArgLysLysLeuT : 127 :..!!!:||| !:!!|||:!! !!|||||||||:!!||||||!:!!!.|||||| uCysIleLeuSerMetHisValGlyGlyGlnPheLysIleLeuGlnAsnLysLeuG 1682003 : GTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAGATTTTACAAAACAAACTCC : 1682059 128 : hrArgLeuLeuAspGlyGluGluGlyAsnArgSerIleAspGluPheArgLysGlu : 145 !! !:!!|||..!! !:!:............... ! !.!. !|||||| lnThrValLeuSerGluLysSerSerLysGluLysSerAlaGlyLeuTyrLysGlu 1682060 : AAACAGTATTGAGTGAGAAatcttcgaaagaaaaatcagctGGACTGTATAAAGAG : 1682113 146 : LeuValTrpIleIleThrLysHisGluHisLeuAsnTrpHisAlaGlnThrIleGl : 164 !!! ! ! !:!! ! ! |||.!. ||| !! !:::...::: :::|| PheLysGluCysValGlnTyrHisHisLeuLeuLeuSerTyrValGluLysLeuGl 1682114 : TTCAAGGAGTGCGTACAGTATCATCATTTGCTTCTTTCGtacgtggaaaaattgga : 1682170 165 : uLysCysPheSerThrLeuLeuLeuLeuGlnMetLeuLeuCysThrIleGluIleC : 183 | |||!!!..!! !|||:!!:!!|||:!!|||:!!! !!:!|||! :!:| uTyrValPheCysValProLeuMetIleGlnLeuLeuValSerSerIleValLeuC 1682171 : atacgTATTTTGTGTCCCGTTGATGATTCAATTGCTGGTGTCTAGCATAGTTCTGT : 1682227 184 : ysPheGlnGlyPhe : 187 || !!..!|||||| ysValSerGlyPhe 1682228 : GCGTCTCGGGGTTT : 1682241 vulgar: gi|815920800|ref|XP_003492337.2| 89 187 . KQ414915.1 1681947 1682241 + 132 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681948 1682241 132 + . gene_id 1 ; sequence gi|815920800|ref|XP_003492337.2| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1681948 1682241 . + . KQ414915.1 exonerate:protein2genome:local exon 1681948 1682241 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681948 1682241 132 + . alignment_id 1 ; Query gi|815920800|ref|XP_003492337.2| ; Align 1681948 90 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815912130|ref|XP_012241492.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 46 -> 145 Target range: 1608 -> 1905 47 : IleThrLeuTyrTyrAlaLeuTyrValTyrThrThrValValAlaTyrIleThrIleProAl : 67 |||..! !|||! !:!! !!!.! !..! !|||:!! !!:!:!::!!! |||!. IleValLysTyrSerIleValAsnAlaIleValCysValIleLeuPheValSerThrProVa 1609 : ATTGTCAAATATTCGATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGT : 1669 68 : aIleSerLeuLeuIleAspPheIleIleProSerAsnHisSerGluGluLysSerPheProI : 88 !! ! !!! !:!!:!:|||.!!:!!:!!|||!.!|||.!.|||..!!!: !:!!!:! ! lThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleT 1670 : GACACCGCATATTTTGGACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTT : 1732 89 : leGluLeuAspTyrGlyValAspThrGlnHisTyrPheTyrTyrLeuPheIleHisSerTyr : 108 ! ! ! !!||| !..!||| !!!. ! ||| ! |||:!!.!!! |||! ! yrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAla 1733 : ACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCG : 1792 109 : MetThrIleAlaMetIleAlaAsnLeuIleAlaSerCysAspThrThrTyrMetLeuTyrAl : 129 ..!||| !:!!:!: ! !!:!! ! !:!!|||||||||!:!|||!!:! ! !!. SerValIleLeuValValPheTyrValTyrPheAlaCysAspThrSerTyrIleTyrValVa 1793 : TCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGT : 1855 130 : aGlnHisGlyCysAlaLeuPheAlaIleValSerTyrGluLeuArgThr : 145 !||||||||||||!.!|||!!.|||:!: !.!. ::::::|||::: lGlnHisGlyCysGlyLeuLeuAlaValSerGly***LysIleArgSer 1856 : GCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaattcgatcg : 1905 vulgar: gi|815912130|ref|XP_012241492.1| 46 145 . KQ414921.1 1608 1905 + 137 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1609 1905 137 + . gene_id 1 ; sequence gi|815912130|ref|XP_012241492.1| ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1609 1905 . + . KQ414921.1 exonerate:protein2genome:local exon 1609 1905 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1609 1905 137 + . alignment_id 1 ; Query gi|815912130|ref|XP_012241492.1| ; Align 1609 47 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927462|ref|XP_012248265.1| PREDICTED: odorant receptor 49a-like, partial [Bombus impatiens] Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 77 -> 196 Target range: 1578 -> 1932 78 : LeuGluGluValThrIleArgGlySerLysMetAlaLysLeuTyrArgAsnThrLeuMetVa : 98 |||.!.!!: !|||:!! ! !!!! ! !!:!.!|||! !! ! ! !.! !!!:|| LeuAsnAspGlnThrValTyrPheThrTyrIleValLysTyrSerIleValAsnAlaIleVa 1579 : TTAAACGACCAAACTGTTTATTTTACGTACATTGTCAAATATTCGATAGTGAACGCGATCGT : 1639 99 : lPheMetValLeuPheLeuLeuValProLeuIleSerProMetMetAspIleLeuLeuProL : 119 |! !:!::!!||||||:!!! !..!|||:!!! ! !!! !!!::!!||||||||||||||| lCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProL 1640 : TTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGA : 1702 120 : euAsnGluThrArgProArgGlnGlnLeuLeuAsnValAsnTyrValLeuPheAspSerHis : 139 !||||||:!!||| ! ! ! ! :!!! ! !.! ||| !!!! !|||..!||| ysAsnGluSerArgAspValAlaTyrIleTyrProAla---TyrTyrPheThrAspGluHis 1703 : AAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCC---TATTATTTCACCGACGAGCAT : 1759 140 : AsnTyrPhePheCysValTyrLeuGlnLeuSerTrpAlaAlaIleValValSerIleSerIl : 160 !!.||| ! ! ! !:!! ! !!!.:!!:!!! !.! !:!:||||||! ! ! ! LysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTy 1760 : AAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTA : 1822 161 : eValThrValAspSerLeuLeuMetLeuIleValHisHisAsnSerGlyLeuPheIleValC : 181 ! !!.!! !|||!!! !! !!!:! !:!!|||!!.|||..!!!!||||||!!. !|||! rPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValS 1823 : CTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGT : 1885 182 : ysGlyHisGlnIleGlnLysLysThrArgHisLeuAsnSerPheThr : 196 !||| :::|||:::...... ! ! |||||| !!|||!:! erGly***LysIleArgSerAsnAspSer***LeuAsnProPheSer 1886 : CCGGgtaaaaaattcgatcgaacgattCGTAGCTCAACCCTTTCAGT : 1932 vulgar: gi|815927462|ref|XP_012248265.1| 77 196 . KQ414921.1 1578 1932 + 109 M 54 162 G 1 0 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1579 1932 109 + . gene_id 1 ; sequence gi|815927462|ref|XP_012248265.1| ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1579 1932 . + . KQ414921.1 exonerate:protein2genome:local exon 1579 1932 . + . insertions 0 ; deletions 1 KQ414921.1 exonerate:protein2genome:local similarity 1579 1932 109 + . alignment_id 1 ; Query gi|815927462|ref|XP_012248265.1| ; Align 1579 78 162 ; Align 1741 133 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 322 Query range: 0 -> 177 Target range: 1845 -> 3314 1 : MetValLeuValGlnHisAlaCysGlyLeuLeuIleValThr{Gl} >>>> Target In : 15 !!: !:!!|||||||||!.!|||||||||||| !|||:!!{||} 265 IleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSer{Gl}++ 1846 : ATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCC{GG}gt.............. : 1892 16 : tron 1 >>>> {y}TyrArgTyrLysAsnAlaIleAsnAspLeuSerPheAsnThrLysA : 31 bp {|}|||||||||||| !|||||| !!:|||||| !...! !!:!: ++{y}TyrArgTyrLysCysAlaIleValGluLeuSerSerArgLysArgA 1893 : ...........ag{A}TATCGTTACAAATGTGCGATCGTGGAATTGTCCAGTCGGAAAAGGA : 2201 32 : spSerGluLysLysAlaLysGluThrTyrGluArgValArgPheSerIleGlnAlaHisGln : 51 !!|||! ! !:!! ! |||! !|||..!|||||| !! !|||||||||!.!|||||| snSerValThrGln---AspGluIleTyrArgArgValCysHisSerIleGlnGlyHisGln 2202 : ACAGTGTCACGCAG---GATGAAATTTATAGAAGAGTGTGTCATTCGATTCAAGGACACCAG : 2258 52 : ArgAlaIle<->MetPheLeuGluLysIleGluSerThrHisValThrTyrLeuPheMetCy : 71 !.!|||||| |||:::||||||...... :::... ||| ... HisAlaIleLysSerValLeuLysLysIleArgGlnIleValLeuAsnValLeuCysPhePh 2259 : CATGCTATAAAGtcggtattaaaaaagatacgtcaaattgttttaaatgttctttgcttttt : 2321 72 : sMetGlyIleValValLeuCys{Va} >>>> Target Intron 2 >>>> {l}SerI : 81 .!!!!::!!:!!||| !!{ } 611 bp {!}!!!| eSerSerMetLeuLeuLeuArg{Pr}++ ++{o}ThrI 2322 : ttctAGCATGTTACTATTACGC{CC}gt.........................ag{A}ACAA : 2962 82 : leThrMetAlaGlnIleAlaThrMetGluIleCysValAspPheTyrLysPheIleSerPhe : 101 ||.!! ! !|||:!::!!!.! !|||||| !!.!!!:||| !||| ! !!!!||| leAlaTrpLysGlnValSerAsnSerGluIleAsnAlaGluPheAlaLysAspCysThrPhe 2963 : TTGCTTGGAAACAGGTGTCGAACTCGGAGATTAACGCGGAGTTTGCCAAGGATTGCACATTT : 3022 102 : LeuValIleGlnPheLeuHisLeuPheCysLeuThrMetGlnGlyGlnPheIleIleAsnSe : 122 :!!|||||||||!!.:!!|||:!!.!!! !||||||:!:||||||||||||:!:|||:!!:! IleValIleGlnLeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAspAl 3023 : ATCGTGATTCAATTGGTACACATACTTTACCTAACTCTTCAAGGACAATTCGTGATCGACGC : 3085 123 : rSerAspGluIleTyrAspAla{Il} >>>> Target Intron 3 >>>> {e}TyrG : 132 !!:!!!:||||||!:!!!::!!{||} 62 bp {|}|||. aAsnGluGluIlePheGluSer{Il}++ ++{e}TyrS 3086 : GAACGAGGAAATCTTCGAATCG{AT}gt.........................ag{A}TACA : 3177 133 : luAlaSerTrpTyrAsnThrAsnProLysThrGlnAlaLeuTyrLeuLeuAlaLeuArgArg : 152 ..|||! !|||||||||!:!:!! !!:!||||||:!!|||!:!:!!||||||||||||!.! erAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeuArgAsn 3178 : GCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGTTAAGAAAT : 3237 153 : SerLeuThrProCysTyrLeuThrAlaGlyGlyLeuIleArgLeuAsnMetGluSerPheSe : 173 !!!|||:!! !! ! ! :!!||||||||||||||||||! !:!!|||:!!:!!|||||||| CysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGlnSerPheSe 3238 : TGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAAAGTTTCTC : 3300 174 : rGluValIleLys : 177 |||||||! !::: rGluValThrArg 3301 : AGAGGTAACACGT : 3314 vulgar: gi|815925234|ref|XP_012247254.1| 0 177 . KQ414921.1 1845 3314 + 322 M 14 42 S 0 2 5 0 2 I 0 261 3 0 2 S 1 1 M 20 60 G 1 0 M 18 54 G 0 3 M 24 72 S 0 2 5 0 2 I 0 607 3 0 2 S 1 1 M 50 150 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1846 3314 322 + . gene_id 1 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation + KQ414921.1 exonerate:protein2genome:local cds 1846 1889 . + . KQ414921.1 exonerate:protein2genome:local exon 1846 1889 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 1890 1891 . + . intron_id 1 ; splice_site "gt" KQ414921.1 exonerate:protein2genome:local intron 1890 2154 . + . intron_id 1 KQ414921.1 exonerate:protein2genome:local splice3 2153 2154 . + . intron_id 0 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 2155 2346 . + . KQ414921.1 exonerate:protein2genome:local exon 2155 2346 . + . insertions 3 ; deletions 1 KQ414921.1 exonerate:protein2genome:local splice5 2347 2348 . + . intron_id 2 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 2347 2957 . + . intron_id 2 KQ414921.1 exonerate:protein2genome:local splice3 2956 2957 . + . intron_id 1 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 2958 3110 . + . KQ414921.1 exonerate:protein2genome:local exon 2958 3110 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 3111 3112 . + . intron_id 3 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 3111 3172 . + . intron_id 3 KQ414921.1 exonerate:protein2genome:local splice3 3171 3172 . + . intron_id 2 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 3173 3314 . + . KQ414921.1 exonerate:protein2genome:local exon 3173 3314 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1846 3314 322 + . alignment_id 1 ; Query gi|815925234|ref|XP_012247254.1| ; Align 1846 1 42 ; Align 2156 16 60 ; Align 2216 37 54 ; Align 2273 55 72 ; Align 2959 80 150 ; Align 3174 131 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920792|ref|XP_012245313.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 182 -> 274 Target range: 807314 -> 807587 183 : LeuIleTyrValIleTyrValMetLeuGlnLeuLeuLeuTyrCysTyrMetGlyGluL : 202 !!!:!! :!!:!: !:!!:!!:!!||||||! !||||||..!||| !|||.!.! PheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnT 807315 : TTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACA : 807372 203 : ysLeuThrValGluSerThrGluIleAlaAsnThrAlaTyrAsnAlaGluTrpTyrAs : 221 !||| ! !..!!!! !|||||||||.!..!!||||||:!!:!! ||||||.. hrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrAr 807373 : CACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCG : 807429 222 : nLeuProProLysAsnAlaArgTrpLeuValIleIleMetCysArgAlaArgSerSer : 240 !! !! ! ! ! |||||| |||:!!:!:|||!!: !|||!.! !:!||| gCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGly---AsnSer 807430 : TTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGA---AATTCG : 807483 241 : ProLeuGlnIleThrAlaGlyArgPheCysCysPheThrLeuValLeuTyrSerGlnV : 260 |||! !!::||||||||||||!:!||| ! .!.!.!||| !! !!:!!.!:!!: ProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluI 807484 : CCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGA : 807543 261 : alLeuLysThrSerMetGlyTyrValSerValLeuLeuAlaMet : 274 !!||||||.!!||| ..!|||:!!||||||:!! !!.!||| leLeuLysAlaSerGlySerTyrLeuSerValMetLysValMet 807544 : TACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: gi|815920792|ref|XP_012245313.1| 182 274 . KQ414940.1 807314 807587 + 150 M 55 165 G 1 0 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807315 807587 150 + . gene_id 1 ; sequence gi|815920792|ref|XP_012245313.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807315 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807315 807587 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807315 807587 150 + . alignment_id 1 ; Query gi|815920792|ref|XP_012245313.1| ; Align 807315 183 165 ; Align 807480 239 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815914351|ref|XP_012242451.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 93 -> 204 Target range: 807260 -> 807590 94 : IleIleTyrMetMetLeuLeuAsnProSerGlySerPheValAsnThrLeuThrTyrV : 113 .!!:!!!:!:!!:!: !|||!:! !!!.!! !!:! !!!.! ! !!:!!:!| PheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheV 807261 : TTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCG : 807318 114 : alLeuTyrIleSerIleIleIleSerMetLeuTyrLeuTyrSerPheMetGlyGluGl : 132 ||||| :!:!!!:!::!:||| ..!||||||||||||:!!!:! !|||.!. alLeuMetValThrLeuLeuIle---GlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807319 : TTCTGATGGTGACTTTGCTGATT---CAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 133 : nLeuSerAsnGluSerMetLysValSerGluAlaPheTyrAlaThrAspTrpAsnAsn : 151 !|||..!:::..!!!! :!!:!!:!!:!!||| !|||! !:!! !||| !!..! rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 152 : LeuSerLeuHisAsnGlnLysLeuLeuLeuLeuValMetThrLeuGlyGlnGlnAsnL : 171 ! ! ! !||| !:! !|||||||||:!!!!: !! !|||.!...! !! CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 172 : euHisValThrAlaGlyLysPheTyrThrPheSerLeuTyrGlyPheIleAlaValMe : 190 !!.!:!!||||||||||||||| ! !!.!.!:!|||!:! !|||! ! !:!!:! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 191 : tLysThrSerPheGlyTyrValSerLeuLeuArgThrLeuIle : 204 !|||.!!||| !..!|||:!!|||:!!:!!!:!..!:!!!!: uLysAlaSerGlySerTyrLeuSerValMetLysValMetMet 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATG : 807590 vulgar: gi|815914351|ref|XP_012242451.1| 93 204 . KQ414940.1 807260 807590 + 143 M 27 81 G 1 0 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807261 807590 143 + . gene_id 1 ; sequence gi|815914351|ref|XP_012242451.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807261 807590 . + . KQ414940.1 exonerate:protein2genome:local exon 807261 807590 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807261 807590 143 + . alignment_id 1 ; Query gi|815914351|ref|XP_012242451.1| ; Align 807261 94 81 ; Align 807342 122 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 297 -> 408 Target range: 807260 -> 807593 298 : TyrTyrCysLeuValGluTrpAlaAsnSerAspLeuIleAlaThrLeuThrTyrMetT : 317 !:! !! !||||||! !::!!..!.!||| !:!!|||.!!|||! ! !.!.. PheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheV 807261 : TTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCG : 807318 318 : hrLeuLeuIleSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuLe : 336 .!|||:!!:!:!!!!!. !.!!.!.:!:!:!:!!!:!..!||| |||.!. !|| alLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLe 807319 : TTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACT : 807375 337 : uSerGluGlnCysSerGluIleGlyThrValSerTyrGluIleAspTrpTyrAsnLeu : 355 |..!..!!:! !..!||||||!.! !!.!:!!|||!!: ! !||||||..!! ! uGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCys 807376 : CGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGC : 807432 356 : ProAlaLysGluAlaTyrAspLeuIleLeuLeuIleSerIleSerGlnTyrProProL : 375 ! !!.! ! ! !||| ||||||:!!|||:!!||| ! !.!!.!.! ||| !: HisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrA 807433 : CACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATC : 807492 376 : ysLeuThrAlaGlyLysIleIleGluLeuSerLeuAsnThrPheSerSerValAlaLy : 394 :::!!||||||||||||.!!:!! !:!!!:!||| !||||||!.!..!:!! !|| rgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLy 807493 : GTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAA : 807549 395 : sThrSerLeuValTyrLeuAsnLeuLeuGlnThrValAlaAsp : 408 |.!!||| ! !||||||::!:!!:!!:!!..!:!! !||| sAlaSerGlySerTyrLeuSerValMetLysValMetMetAsp 807550 : AGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: gi|815911906|ref|XP_012241394.1| 297 408 . KQ414940.1 807260 807593 + 166 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807261 807593 166 + . gene_id 1 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807261 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807261 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807261 807593 166 + . alignment_id 1 ; Query gi|815911906|ref|XP_012241394.1| ; Align 807261 298 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920800|ref|XP_003492337.2| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 214 -> 296 Target range: 807332 -> 807578 215 : IleLeuValHisValTyrLeuTyrCysTyrIleGlyGluMetLeuLeuIleGlnSerA : 234 :!:|||:!!!!.:!!|||||||||..!||| |||.!.! ||| ! !:!!!!. LeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrG 807333 : TTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCG : 807390 235 : rgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProSerGlnTh : 253 .!|||!!::!!.!.:!!||||||!!:||| !||||||..! ! ! ! ! !.! luGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAl 807391 : AAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGC : 807447 254 : rLysCysLeuLeuPheIleMetAsnArgSerThrArgProLeuCysLeuThrAlaGly : 272 !!:! !||||||!!.|||!!::!!|||.!!!.! !|||! ! !!:!!||||||||| aArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGly 807448 : CAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGA : 807504 273 : LysPheGlyIlePheSerMetGluLeuPheSerThrIleLeuLysThrAlaMetGlyT : 292 ||||||! ! .!.!:!:!: !|||!.! !|||||||||.!!:!! ..!| LysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerT 807505 : AAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGT : 807564 293 : yrLeuSerValLeu : 296 |||||||||||:!! yrLeuSerValMet 807565 : ATCTGTCTGTAATG : 807578 vulgar: gi|815920800|ref|XP_003492337.2| 214 296 . KQ414940.1 807332 807578 + 152 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807333 807578 152 + . gene_id 1 ; sequence gi|815920800|ref|XP_003492337.2| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807333 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807333 807578 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807333 807578 152 + . alignment_id 1 ; Query gi|815920800|ref|XP_003492337.2| ; Align 807333 215 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920798|ref|XP_012245316.1| PREDICTED: odorant receptor 67c-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 273 -> 340 Target range: 807314 -> 807512 274 : LeuIleTyrValPheTyrValMetLeuGlnLeuPheLeuTyrCysTyrMetGlyGluL : 293 !!!:!! :!! ! !:!!:!!:!!||||||!:!||||||..!||| !|||.!.! PheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnT 807315 : TTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACA : 807372 294 : ysLeuAlaAlaGluSerThrGluIleAlaAsnIleAlaTyrSerThrLysTrpTyrAs : 312 !|||! !:!!..!!!! !|||||||||.!. !||||||..!:!! ||||||.. hrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrAr 807373 : CACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCG : 807429 313 : nLeuSerProLysAsnAlaArgTrpLeuValIleIleMetCysArgAlaThrSerSer : 331 !! ! ! ! ! |||||| |||:!!:!:|||!!: !|||!.! !:!||| gCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGly---AsnSer 807430 : TTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGA---AATTCG : 807483 332 : ProLeuGlnIleThrAlaGlyArgPhe : 340 |||! !!::||||||||||||!:!||| ProTyrArgIleThrAlaGlyLysPhe 807484 : CCTTATCGTATAACAGCCGGAAAATTC : 807512 vulgar: gi|815920798|ref|XP_012245316.1| 273 340 . KQ414940.1 807314 807512 + 116 M 55 165 G 1 0 M 11 33 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807315 807512 116 + . gene_id 1 ; sequence gi|815920798|ref|XP_012245316.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807315 807512 . + . KQ414940.1 exonerate:protein2genome:local exon 807315 807512 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807315 807512 116 + . alignment_id 1 ; Query gi|815920798|ref|XP_012245316.1| ; Align 807315 274 165 ; Align 807480 330 33 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815920796|ref|XP_012245315.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 299 -> 377 Target range: 807314 -> 807545 300 : LeuLeuTyrValValTyrValMetLeuGlnLeuPheLeuTyrCysTyrMetGlyGluL : 319 !!!:!! :!!||| !:!!:!!:!!||||||!:!||||||..!||| !|||.!.! PheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnT 807315 : TTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACA : 807372 320 : ysLeuAlaAlaGluSerThrGluIleAlaAsnThrAlaTyrTyrAlaGluTrpTyrAs : 338 !|||! !:!!..!!!! !|||||||||.!..!!|||||| !!:!! ||||||.. hrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrAr 807373 : CACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCG : 807429 339 : nLeuProProLysSerAlaArgTrpLeuValIleIleMetCysArgAlaArgSerSer : 357 !! !! ! ! ! :!!|||||| |||:!!:!:|||!!: !|||!.! !:!||| gCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGly---AsnSer 807430 : TTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGA---AATTCG : 807483 358 : ProLeuGlnIleThrAlaGlyArgPheTyrTrpPheThrLeuAlaLeuTyrThrGlnV : 377 |||! !!::||||||||||||!:!||| ! !.!.!.!||| ! !!:!! !:!!: ProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluI 807484 : CCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGA : 807543 378 : al : 377 !! le 807544 : TA : 807545 vulgar: gi|815920796|ref|XP_012245315.1| 299 377 . KQ414940.1 807314 807545 + 121 M 55 165 G 1 0 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807315 807545 121 + . gene_id 1 ; sequence gi|815920796|ref|XP_012245315.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807315 807545 . + . KQ414940.1 exonerate:protein2genome:local exon 807315 807545 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807315 807545 121 + . alignment_id 1 ; Query gi|815920796|ref|XP_012245315.1| ; Align 807315 300 165 ; Align 807480 356 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 317 -> 405 Target range: 807317 -> 807581 318 : MetLeuLeuValSerLeuThrPheAsnMetPheLeuLeuCysTyrIleGlyAsnLeuL : 337 :!:|||:!!|||!!!||| !.!!.!.:!!!:!|||! !..!||| |||||| !| ValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrL 807318 : GTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACAC : 807375 338 : euIleGluLysSerThrSerValGlyIleSerCysTyrMetIleAspTrpTyrArgLe : 356 || ..!::!!!! !..!:!!!.! !:!!..!||| ! !|||||||||! euGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCy 807376 : TCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTG : 807432 357 : uProValLysThrValGlnAspLeuIleLeuIleIleAlaMetSerAsnSerProAla : 375 !! !! ! ! .!!!.!::!||||||:!!||||||||| ! .!!||||||||| ! sHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyr 807433 : CCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTAT : 807489 376 : LysIleSerAlaGlyArgIlePheLeuLeuSerLeuThrThrPheGlyAsnValLeuL : 395 :::|||!!!||||||!:!.!! !!! !:!!!:!||| !|||||| !.!.:!!|||| ArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuL 807490 : CGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGA : 807549 396 : ysThrSerPheAlaTyrLeuAsnPheValArg : 405 ||.!!||| !:!!||||||::! ! :!!!:! ysAlaSerGlySerTyrLeuSerValMetLys 807550 : AAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: gi|815911896|ref|XP_012241389.1| 317 405 . KQ414940.1 807317 807581 + 152 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807318 807581 152 + . gene_id 1 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807318 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807318 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807318 807581 152 + . alignment_id 1 ; Query gi|815911896|ref|XP_012241389.1| ; Align 807318 318 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 321 -> 412 Target range: 807317 -> 807590 322 : LeuLeuLeuIleSerLeuThrPheAsnMetPheLeuLeuCysTyrIleGlyAspLeuL : 341 :!!|||:!!:!:!!!||| !.!!.!.:!!!:!|||! !..!||| |||:!! !| ValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrL 807318 : GTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACAC : 807375 342 : euIleGluLysSerThrAsnValGlyIleSerCysCysMetIleAspTrpTyrHisLe : 360 || ..!::!!!! !.!.:!!!.! !:!!..!! ! ! !||||||!.!! euGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCy 807376 : TCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTG : 807432 361 : uProAlaLysSerValGlnAspLeuValLeuIleIleAlaMetSerAsnAsnProAla : 379 !! !!.! ! :!!!.!::!||||||:!!||||||||| ! .!!|||:::||| ! sHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyr 807433 : CCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTAT : 807489 380 : LysIleSerAlaGlyArgIleValAsnLeuSerLeuSerThrPheAlaSerValLeuL : 399 :::|||!!!||||||!:!.!!||| :!!!:!|||! !|||||| !..!:!!|||| ArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuL 807490 : CGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGA : 807549 400 : ysThrSerPheAlaTyrLeuAsnPheLeuArgThrAlaLeu : 412 ||.!!||| !:!!||||||::! ! :!!!:!..! !:!! ysAlaSerGlySerTyrLeuSerValMetLysValMetMet 807550 : AAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATG : 807590 vulgar: gi|815911898|ref|XP_012241390.1| 321 412 . KQ414940.1 807317 807590 + 141 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807318 807590 141 + . gene_id 1 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807318 807590 . + . KQ414940.1 exonerate:protein2genome:local exon 807318 807590 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807318 807590 141 + . alignment_id 1 ; Query gi|815911898|ref|XP_012241390.1| ; Align 807318 322 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 94 -> 201 Target range: 32488 -> 32809 95 : PheMetLeuSerCysMetSerGlyPheIleIleIleProLeuSerProValIleLeuAsp : 114 |||:!:! !! ! ! !!:! !..!!:! !|||:!:! !!!! !||| !|||:!!||| PheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAsp 32489 : TTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGAC : 32546 115 : IleIleSerProLeuAsnGluThrArgHisArgGluGlnMetPheArgValThrTyrPhe : 134 :!:|||:!!||||||||||||:!!||||||!.!! !! ! !!:! !! ! !|||||| ValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPhe 32547 : GTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTC : 32606 135 : LeuAspGluAspGlnTyrPheTyrProIleTyrPheHisSerLeuTrpCysAlaPheIle : 154 :!!|||:::...:::|||||| |||||| !!.|||! !||| !! !!.! !:!! ValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeu 32607 : GTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTT : 32666 155 : IleThrMetIleAlaValThrIleAspSerLeuTyrIleGlnIleValHisHisAspSer : 174 ! !! !:!!|||..!.!!:::||||||::::::||| ...::! !|||! !!!! GlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCys 32667 : GGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGC : 32726 175 : AlaLeuPheAlaIleCysGlyGlnAlaLeuIleThrAlaArgLysSerThrAspValAsp : 194 ||| !||| !||| !||| !!.!!! !.!!..!||||||:!! ! ! !! !!!: AlaLysPheAsnIleLeuGly***Thr***PheValAlaArgGluHisPheArgGluGlu 32727 : GCCAAATTCAATATTCTCGGGTAAACATAATTCGTCGCGCGAGAACATTTTCGCGAGGAG : 32786 195 : ThrAsnLysThrTyrThrGlu : 201 |||!!.!:!||| :!!||| ThrLysArgThrArgSerGlu 32787 : ACAAAAAGAACACGGTCAGAG : 32809 vulgar: gi|815916412|ref|XP_012243371.1| 94 201 . KQ415081.1 32488 32809 + 164 M 107 321 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32489 32809 164 + . gene_id 1 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32489 32809 . + . KQ415081.1 exonerate:protein2genome:local exon 32489 32809 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32489 32809 164 + . alignment_id 1 ; Query gi|815916412|ref|XP_012243371.1| ; Align 32489 95 321 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927462|ref|XP_012248265.1| PREDICTED: odorant receptor 49a-like, partial [Bombus impatiens] Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 73 -> 196 Target range: 142 -> 508 74 : AspLeuTyrIleLeuGluGluValThrIleArgGlySerLysMetAlaLysLeuTyrArgAsnT : 95 ||| !! ! !|||.!.!!: !|||:!! ! !!!! ! !!:!.!|||! !! ! ! ! AspArgSerTyrLeuAsnAspGlnThrValTyrPheThrTyrIleValLysTyrSerIleValA 143 : GACAGATCTTATTTAAACGACCAAACTGTTTATTTTACGTACATTGTCAAATATTCGATAGTGA : 206 96 : hrLeuMetValPheMetValLeuPheLeuLeuValProLeuIleSerProMetMetAspIleLe : 116 .! !!!:|||! !:!::!!||||||:!!! !..!|||:!!! ! !!! !!!::!!|||||||| snAlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLe 207 : ACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTT : 269 117 : uLeuProLeuAsnGluThrArgProArgGlnGlnLeuLeuAsnValAsnTyrValLeuPheAsp : 137 ||||||| !||||||:!!||| ! ! ! ! :!!! ! !.! ||| !!!! !||| uLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAla---TyrTyrPheThrAsp 270 : ACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCC---TATTATTTCACCGAC : 329 138 : SerHisAsnTyrPhePheCysValTyrLeuGlnLeuSerTrpAlaAlaIleValValSerIleS : 159 ..!|||!!.||| ! ! ! !:!! ! !!!.:!!:!!! !.! !:!:||||||! ! ! GluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrV 330 : GAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACG : 395 160 : erIleValThrValAspSerLeuLeuMetLeuIleValHisHisAsnSerGlyLeuPheIleVa : 180 ! ! !!.!! !|||!!! !! !!!:! !:!!|||!!.|||..!!!!||||||!!. !|| alTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaVa 396 : TGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGT : 458 181 : lCysGlyHisGlnIleGlnLysLysThrArgHisLeuAsnSerPheThr : 196 |! !||| :::|||:::...... ! ! |||||| !!|||!:! lSerGly***LysIleArgSerAsnAspSer***LeuAsnProPheSer 459 : GTCCGGgtaaaaaattcgatcgaacgattCGTAGCTCAACCCTTTCAGT : 508 vulgar: gi|815927462|ref|XP_012248265.1| 73 196 . LHQN01023902.1 142 508 + 110 M 58 174 G 1 0 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 143 508 110 + . gene_id 1 ; sequence gi|815927462|ref|XP_012248265.1| ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 143 508 . + . LHQN01023902.1 exonerate:protein2genome:local exon 143 508 . + . insertions 0 ; deletions 1 LHQN01023902.1 exonerate:protein2genome:local similarity 143 508 110 + . alignment_id 1 ; Query gi|815927462|ref|XP_012248265.1| ; Align 143 74 174 ; Align 317 133 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 181 Query range: 0 -> 132 Target range: 421 -> 1693 1 : MetValLeuValGlnHisAlaCysGlyLeuLeuIleValThr{Gl} >>>> Target In : 15 !!: !:!!|||||||||!.!|||||||||||| !|||:!!{||} 265 IleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSer{Gl}++ 422 : ATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCC{GG}gt.............. : 468 16 : tron 1 >>>> {y}TyrArgTyrLysAsnAlaIleAsnAspLeuSerPheAsnThrLysA : 31 bp {|}|||||||||||| !|||||| !!:|||||| !...! !!:!: ++{y}TyrArgTyrLysCysAlaIleValGluLeuSerSerArgLysArgA 469 : ...........ag{A}TATCGTTACAAATGTGCGATCGTGGAATTGTCCAGTCGGAAAAGGA : 777 32 : spSerGluLysLysAlaLysGluThrTyrGluArgValArgPheSerIleGlnAlaHisGln : 51 !!|||! ! !:!! ! |||! !|||..!|||||| !! !|||||||||!.!|||||| snSerValThrGln---AspGluIleTyrArgArgValCysHisSerIleGlnGlyHisGln 778 : ACAGTGTCACGCAG---GATGAAATTTATAGAAGAGTGTGTCATTCGATTCAAGGACACCAG : 834 52 : ArgAlaIle{Me} >>>> Target Intron 2 >>>> {t}PheLeuGluLysIleGl : 61 !.!||||||{! } 614 bp { } ! :!! ! !! ! HisAlaIle{As}++ ++{n}ValIleLeuValLysVa 835 : CATGCTATA{AA}gt.........................ag{C}GTGATACTGGTGAAGGT : 1478 62 : uSerThrHisValThrTyrLeuPheMetCysMetGlyIleValValLeuCysValSerIleT : 82 !|||:!! ! ! ! ! |||!:! ! ! !! :!!:!!:!! ! !!!!|||: lSerSerSerGluTrpGlnLeuTyrArgValAlaIleThrLeuIleIleLeuLysThrIleS 1479 : GAGCTCTTCAGAGTGGCAATTATATCGCGTTGCGATAACGCTGATCATCCTCAAAACAATTT : 1541 83 : hrMetAlaGlnIleAlaThrMetGluIleCysValAspPheTyrLysPheIleSerPheLeu : 102 !! ! !|||:!::!!!.! !|||||| !!.!!!:||| !||| ! !!!!|||:!! erTrpLysGlnValSerAsnSerGluIleAsnAlaGluPheThrLysAspCysThrPheIle 1542 : CTTGGAAACAGGTGTCGAACTCGGAGATTAACGCGGAGTTTACCAAGGATTGCACATTTATC : 1601 103 : ValIleGlnPheLeuHisLeuPheCysLeuThrMetGlnGlyGlnPheIleIleAsnSerSe : 123 :!!||||||!!.:!!|||:!!.!!! !||||||:!:||||||||||||:!:|||:!!:!!!: MetIleGlnLeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAspAlaAs 1602 : ATGATTCAATTGGTACACATACTTTATCTAACTCTTCAAGGACAATTCGTGATCGACGCGAA : 1664 124 : rAspGluIleTyrAspAlaIleTyrGlu : 132 !!!:||||||!:!!!::!!!!:!! ||| nGluGluIlePheGluSerMet***Glu 1665 : CGAGGAAATCTTCGAATCGATGTAAGAA : 1693 vulgar: gi|815925234|ref|XP_012247254.1| 0 132 . LHQN01023902.1 421 1693 + 181 M 14 42 S 0 2 5 0 2 I 0 261 3 0 2 S 1 1 M 20 60 G 1 0 M 18 54 S 0 2 5 0 2 I 0 610 3 0 2 S 1 1 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 422 1693 181 + . gene_id 1 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation + LHQN01023902.1 exonerate:protein2genome:local cds 422 465 . + . LHQN01023902.1 exonerate:protein2genome:local exon 422 465 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local splice5 466 467 . + . intron_id 1 ; splice_site "gt" LHQN01023902.1 exonerate:protein2genome:local intron 466 730 . + . intron_id 1 LHQN01023902.1 exonerate:protein2genome:local splice3 729 730 . + . intron_id 0 ; splice_site "AG" LHQN01023902.1 exonerate:protein2genome:local cds 731 847 . + . LHQN01023902.1 exonerate:protein2genome:local exon 731 847 . + . insertions 0 ; deletions 1 LHQN01023902.1 exonerate:protein2genome:local splice5 848 849 . + . intron_id 2 ; splice_site "Gt" LHQN01023902.1 exonerate:protein2genome:local intron 848 1461 . + . intron_id 2 LHQN01023902.1 exonerate:protein2genome:local splice3 1460 1461 . + . intron_id 1 ; splice_site "AG" LHQN01023902.1 exonerate:protein2genome:local cds 1462 1693 . + . LHQN01023902.1 exonerate:protein2genome:local exon 1462 1693 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 422 1693 181 + . alignment_id 1 ; Query gi|815925234|ref|XP_012247254.1| ; Align 422 1 42 ; Align 732 16 60 ; Align 792 37 54 ; Align 1463 56 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815912130|ref|XP_012241492.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 46 -> 145 Target range: 184 -> 481 47 : IleThrLeuTyrTyrAlaLeuTyrValTyrThrThrValValAlaTyrIleThrIleProAlaI : 68 |||..! !|||! !:!! !!!.! !..! !|||:!! !!:!:!::!!! |||!.!! IleValLysTyrSerIleValAsnAlaIleValCysValIleLeuPheValSerThrProValT 185 : ATTGTCAAATATTCGATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGA : 248 69 : leSerLeuLeuIleAspPheIleIleProSerAsnHisSerGluGluLysSerPheProIleGl : 89 ! !!! !:!!:!:|||.!!:!!:!!|||!.!|||.!.|||..!!!: !:!!!:! ! ! hrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrPr 249 : CACCGCATATTTTGGACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCC : 311 90 : uLeuAspTyrGlyValAspThrGlnHisTyrPheTyrTyrLeuPheIleHisSerTyrMetThr : 110 ! ! !!||| !..!||| !!!. ! ||| ! |||:!!.!!! |||! ! ..! oAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerVal 312 : GGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTG : 374 111 : IleAlaMetIleAlaAsnLeuIleAlaSerCysAspThrThrTyrMetLeuTyrAlaGlnHisG : 132 ||| !:!!:!: ! !!:!! ! !:!!|||||||||!:!|||!!:! ! !!.!||||||| IleLeuValValPheTyrValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisG 375 : ATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACG : 440 133 : lyCysAlaLeuPheAlaIleValSerTyrGluLeuArgThr : 145 |||||!.!|||!!.|||:!: !.!. ::::::|||::: lyCysGlyLeuLeuAlaValSerGly***LysIleArgSer 441 : GCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaattcgatcg : 481 vulgar: gi|815912130|ref|XP_012241492.1| 46 145 . LHQN01023902.1 184 481 + 137 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 185 481 137 + . gene_id 1 ; sequence gi|815912130|ref|XP_012241492.1| ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 185 481 . + . LHQN01023902.1 exonerate:protein2genome:local exon 185 481 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 185 481 137 + . alignment_id 1 ; Query gi|815912130|ref|XP_012241492.1| ; Align 185 47 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927462|ref|XP_012248265.1| PREDICTED: odorant receptor 49a-like, partial [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 100 -> 186 Target range: 4999 -> 5254 101 : ValLeuPheLeuLeuValProLeuIleSerProMetMetAspIleLeuLeuProLeuAsnGl : 121 !.!||||||:!!! !:!!|||!!!:!:||||||!!::!!|||||||||:!!||||||||||| AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGl 5000 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGA : 5060 122 : uThrArgProArgGlnGlnLeuLeuAsnValAsnTyrValLeuPheAspSerHisAsnTyrP : 142 ||||||| !!||| !!!!:!! !! ! !||| !!!! !!|||..! !!!!.||| uThrArgAlaArg---LeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrH 5061 : GACGCGAGCACGG---TTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATC : 5120 143 : hePheCysValTyrLeuGlnLeuSerTrpAlaAlaIleValValSerIleSerIleValThr : 162 !!:!! :!! !!!.:!!! ! !.!!.!:!!:!!:!!! ! ! !.!! !.!! isTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 5121 : ATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 5180 163 : ValAspSerLeuLeuMetLeuIleValHisHisAsnSerGlyLeuPheIleValCysGlyHi : 183 !|||:!! !! !:!!! ! !|||!!.||| !!!!||||||!!. !:!!...||| ! CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly** 5181 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTA : 5243 184 : sGlnIleGln : 186 !:!!||| *LeuValGln 5244 : ATTAGTTCAA : 5254 vulgar: gi|815927462|ref|XP_012248265.1| 100 186 . LHQN01025741.1 4999 5254 + 105 M 25 75 G 1 0 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5000 5254 105 + . gene_id 1 ; sequence gi|815927462|ref|XP_012248265.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5000 5254 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5000 5254 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 5000 5254 105 + . alignment_id 1 ; Query gi|815927462|ref|XP_012248265.1| ; Align 5000 101 75 ; Align 5075 127 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 368 Query range: 0 -> 189 Target range: 11690 -> 13062 1 : MetValLeuValGlnHisAlaCysGlyLeuLeuIleValThr{Gl} >>>> Target : 15 ||||||||||||||||||.!!|||||||||!!! !|||.!!{||} 79 MetValLeuValGlnHisThrCysGlyLeuPheAlaValAla{Gl}++ 11691 : ATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCC{GG}gt............ : 11737 16 : Intron 1 >>>> {y}TyrArgTyrLysAsnAlaIle<->AsnAspLeuSerPheAsn : 28 bp {|}||||||!:!||||||:!!:!! .!.||| !||| ! !!. ++{y}TyrArgPheLysAsnSerValArgGluAspAsnSerValLys 11738 : .............ag{A}TACCGCTTCAAAAATTCAGTTCGCGAGGACAATAGCGTGAAG : 11854 29 : ThrLysAspSerGluLysLysAlaLysGluThrTyrGluArgValArgPheSerIleGln : 48 !||| !!! !!!: ! !.!!||||||.!!|||:!!!.!!.! !!|||||||||||| GlyLysTyrPheAspHisTrpThrLysGluAlaTyrLysAsnAlaCysPheSerIleGln 11855 : GGGAAGTATTTCGACCACTGGACGAAAGAGGCGTACAAGAACGCGTGTTTCTCCATTCAG : 11914 49 : AlaHisGlnArgAlaIle{Me} >>>> Target Intron 2 >>>> {t}PheLeu : 57 !.!|||||||||||||||{! } 170 bp { }.!.:!! GlyHisGlnArgAlaIle{As}++ +-{n}LeuIle 11915 : GGACATCAACGTGCTATA{AA}gt.........................ac{T}CTGATC : 12111 58 : GluLysIleGluSerThrHisValThrTyrLeuPheMetCysMetGlyIleValValLeu : 77 :!! ::::::||| !!:!!!:! !!:!!::: GlnValSerPheLeuPheSerLeuSerTyrAspTyrIleSerArgCysLeuIleCysGly 12112 : CAGGTgagcttccttttttctctttcctacGATTACATTTCGCGTTGTTTAAtctgtgga : 12171 78 : CysValSerIleThrMetAlaGlnIleAlaThrMetGluIleCysValAspPheTyrLys : 97 |||::: !|||:!:::!||| !!!::!! !:!!:!!||||||!:! AsnPheSerLeuPheSerAsnGlnLeuSerThrAlaAspLeuAspIleAsnPheTyrArg 12172 : aatttttcactgttttcaaATCAGCTGAGTACGGCGGATTTAGATATAAACTTCTACAGA : 12231 98 : PheIleSerPheLeuValIleGlnPheLeuHisLeuPheCysLeuThrMetGlnGlyGln : 117 ! !||||||:!!:!! !|||.!.:!!||||||||| !:!!! !:!:||||||||| AsnCysSerPheMetLeuCysGlnLeuMetHisLeuPheValIleMetLeuGlnGlyGln 12232 : AACTGCAGTTTCATGTTGTGTCAACTGATGCATCTATTTGTCATCATGCTTCAGGGACAG : 12291 118 : PheIleIleAsnSerSerAspGluIleTyrAspAla{Il} >>>> Target Intron : 130 |||:!::!::!!|||!!!|||..!|||:!!! |||{||} 470 bp PheValLeuAspSerCysAspArgIleHisAlaAla{Il}++ 12292 : TTCGTGCTGGATTCGTGCGACAGAATTCACGCGGCG{AT}gt.................. : 12334 131 : 3 >>>> {e}TyrGluAlaSerTrpTyrAsnThrAsnProLysThrGlnAlaLeuTyr : 146 {|}||||||:!!! !||||||!..!:!::! !!|||||||||||||||||| ++{e}TyrGluSerLeuTrpTyrThrSerSerSerLysThrGlnAlaLeuTyr 12335 : .......ag{A}TACGAATCATTATGGTACACAAGTTCTTCGAAAACACAAGCATTATAC : 12848 147 : LeuLeuAlaLeuArgArgSerLeuThrProCysTyrLeuThrAlaGlyGlyLeuIleArg : 166 :!!:!!||||||||||||!:!||||||||| !! !||||||||||||||||||:!:!:! ValValAlaLeuArgArgAsnLeuThrProThrCysLeuThrAlaGlyGlyLeuValGln 12849 : GTGGTAGCGTTACGAAGAAACCTAACACCTACCTGTTTAACGGCTGGCGGTTTAGTGCAA : 12908 167 : LeuAsnMetGluSerPheSerGlu >>>> Target Intron 4 >>>> ValIleL : 177 |||||||||! !||||||! !||| 83 bp |||:!!| LeuAsnMetAlaSerPheLeuGlu++ ++ValValL 12909 : CTGAACATGGCAAGTTTCTTGGAGgt.........................agGTGGTAA : 13024 178 : ysLeuCysValSerTyrTyrThrValLeuArgSerThr : 189 ||:!!! !|||||||||||||||||||||!:!!!!||| ysMetSerValSerTyrTyrThrValLeuLysThrThr 13025 : AAATGTCCGTATCCTATTATACGGTGTTGAAGACAACG : 13062 vulgar: gi|815925234|ref|XP_012247254.1| 0 189 . LHQN01025741.1 11690 13062 + 368 M 14 42 S 0 2 5 0 2 I 0 75 3 0 2 S 1 1 M 7 21 G 0 3 M 32 96 S 0 2 5 0 2 I 0 166 3 0 2 S 1 1 M 74 222 S 0 2 5 0 2 I 0 466 3 0 2 S 1 1 M 44 132 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11691 13062 368 + . gene_id 1 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 11691 11734 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11691 11734 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 11735 11736 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 11735 11813 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 11812 11813 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 11814 11936 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11814 11936 . + . insertions 3 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 11937 11938 . + . intron_id 2 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 11937 12106 . + . intron_id 2 LHQN01025741.1 exonerate:protein2genome:local splice3 12105 12106 . + . intron_id 1 ; splice_site "AC" LHQN01025741.1 exonerate:protein2genome:local cds 12107 12331 . + . LHQN01025741.1 exonerate:protein2genome:local exon 12107 12331 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 12332 12333 . + . intron_id 3 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 12332 12801 . + . intron_id 3 LHQN01025741.1 exonerate:protein2genome:local splice3 12800 12801 . + . intron_id 2 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 12802 12934 . + . LHQN01025741.1 exonerate:protein2genome:local exon 12802 12934 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 12935 12936 . + . intron_id 4 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 12935 13017 . + . intron_id 4 LHQN01025741.1 exonerate:protein2genome:local splice3 13016 13017 . + . intron_id 3 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 13018 13062 . + . LHQN01025741.1 exonerate:protein2genome:local exon 13018 13062 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11691 13062 368 + . alignment_id 1 ; Query gi|815925234|ref|XP_012247254.1| ; Align 11691 1 42 ; Align 11815 16 21 ; Align 11839 23 96 ; Align 12108 56 222 ; Align 12803 131 132 ; Align 13018 175 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 270 Query range: 99 -> 188 Target range: 9075 -> 9540 100 : SerPheLeuValIleGlnPheLeuHisLeuPheCysLeuThrMetGlnGlyGlnPheIleIl : 120 !!!|||!!!||| !||| !!!|||:!!|||! !|||!.!:!:||||||||||||:!:|| ThrPhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGlnGlyGlnPheValIl 9076 : ACGTTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGGACAATTTGTGAT : 9136 121 : eAsnSerSerAspGluIleTyrAspAla{Il} >>>> Target Intron 1 >>>> { : 130 ||||:!!! !||||||:!:|||||| !{||} 113 bp { eAsnAlaPheAspGluLeuTyrAspLys{Il}++ ++{ 9137 : AAACGCGTTCGACGAACTGTACGACAAG{AT}gt.........................ag{ : 9281 131 : e}TyrGluAlaSerTrpTyrAsnThrAsnProLysThrGlnAlaLeuTyrLeuLeuAlaLeu : 150 |}||||||:!!..!||||||||| !!.!|||!:!|||||||||||||||:!!||||||||| e}TyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeu 9282 : A}TACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTG : 9339 151 : ArgArgSerLeuThrProCysTyrLeuThrAlaGlyGlyLeuIleArgLeuAsnMetGluSe : 171 |||!!!!!!|||!.!||| ! |||||||||||||||:!!! ! !||||||:!:..!|| ArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSe 9340 : AGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATC : 9402 172 : rPheSerGlu >>>> Target Intron 2 >>>> ValIleLysLeuCysValSerTy : 182 ||||:!!||| 85 bp :!!|||||| !! !|||||||| rPheAlaGlu++ ++IleIleLysAlaSerValSerTy 9403 : GTTCGCAGAGgt.........................agATCATCAAAGCATCTGTTTCCTA : 9520 183 : rTyrThrValLeuArgSer : 188 ||||||||||:!!!:!!!! rTyrThrValMetGlnThr 9521 : CTACACGGTGATGCAGACC : 9540 vulgar: gi|815925234|ref|XP_012247254.1| 99 188 . LHQN01025741.1 9075 9540 + 270 M 30 90 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 44 132 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 9076 9540 270 + . gene_id 2 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 9076 9167 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9076 9167 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 9168 9169 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 9168 9280 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 9279 9280 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 9281 9413 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9281 9413 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 9414 9415 . + . intron_id 2 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 9414 9498 . + . intron_id 2 LHQN01025741.1 exonerate:protein2genome:local splice3 9497 9498 . + . intron_id 1 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 9499 9540 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9499 9540 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 9076 9540 270 + . alignment_id 2 ; Query gi|815925234|ref|XP_012247254.1| ; Align 9076 100 90 ; Align 9282 131 132 ; Align 9499 175 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 265 Query range: 85 -> 188 Target range: 5738 -> 6438 86 : IleAlaThrMetGluIleCysValAspPheTyrLysPheIleSerPheLeuValIleGlnPh : 106 |||:!! ! ||| ! !!.!!!:!:: !!:! !!!!|||!!!..! !|||!! IleSerGluHisGluHisAspAlaGluTrpThrLeuTyrCysThrPhePheThrAlaGlnLe 5739 : ATATCAGAACACGAACACGACGCAGAATGGACATTGTACTGCACGTTCTTCACGGCCCAGTT : 5799 107 : eLeuHisLeuPheCysLeuThrMetGlnGlyGlnPheIleIleAsnSerSerAspGluIleT : 127 .||||||:!!.!.! !|||..!:!:||||||||||||:!::!::!!:!!! !|||!!::!!| uLeuHisMetLeuPheLeuValValGlnGlyGlnPheValLeuAspAlaTyrAspAspValT 5800 : GTTACACATGCTGTTCTTAGTCGTTCAGGGGCAGTTCGTGTTGGACGCGTACGACGATGTTT : 5862 128 : yrAspAla{Il} >>>> Target Intron 1 >>>> {e}TyrGluAlaSerTrpTyr : 136 ||:!!.!!{||} 314 bp {|}||||||:!!!!!|||||| yrAsnThr{Il}++ ++{e}TyrGluSerThrTrpTyr 5863 : ATAATACG{AT}gt.........................ag{A}TACGAATCGACATGGTAC : 6203 137 : AsnThrAsnProLysThrGlnAlaLeuTyrLeuLeuAlaLeuArgArgSerLeuThrProCy : 157 |||:!!::: !||||||||||||||||||:!!||||||||||||!!!||||||!.!||| AsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeuArgSerSerLeuAsnProPr 6204 : AATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTACGGAGTAGCCTAAACCCTCC : 6266 158 : sTyrLeuThrAlaGlyGlyLeuIleArgLeuAsnMetGluSerPheSerGlu >>>> Tar : 175 !! |||||||||||||||!!!|||! !||||||:!::!!!!!||||||||| oLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLysThrPheSerGlu++ 6267 : CTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAGACCTTCTCAGAGgt........ : 6322 176 : get Intron 2 >>>> ValIleLysLeuCysValSerTyrTyrThrValLeuArgSer : 188 77 bp :!!||||||! !! !||||||||||||||||||:!!!:!||| ++IleIleLysSerSerValSerTyrTyrThrValMetGlnSer 6323 : .................agATTATAAAATCATCCGTGTCTTACTATACGGTGATGCAATCG : 6438 vulgar: gi|815925234|ref|XP_012247254.1| 85 188 . LHQN01025741.1 5738 6438 + 265 M 44 132 S 0 2 5 0 2 I 0 310 3 0 2 S 1 1 M 44 132 5 0 2 I 0 73 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5739 6438 265 + . gene_id 3 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 5739 5872 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5739 5872 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 5873 5874 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 5873 6186 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 6185 6186 . + . intron_id 0 ; splice_site "aG" LHQN01025741.1 exonerate:protein2genome:local cds 6187 6319 . + . LHQN01025741.1 exonerate:protein2genome:local exon 6187 6319 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 6320 6321 . + . intron_id 2 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 6320 6396 . + . intron_id 2 LHQN01025741.1 exonerate:protein2genome:local splice3 6395 6396 . + . intron_id 1 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 6397 6438 . + . LHQN01025741.1 exonerate:protein2genome:local exon 6397 6438 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5739 6438 265 + . alignment_id 3 ; Query gi|815925234|ref|XP_012247254.1| ; Align 5739 86 132 ; Align 6188 131 132 ; Align 6397 175 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 123 -> 175 Target range: 2536 -> 2692 124 : AspGluIleTyrAspAlaIleTyrGluAlaSerTrpTyrAsnThrAsnProLysThrGlnAl : 144 .!.|||:!:!:!! ! !! !|||...|||!.!|||||||||!:!:::|||!:!||||||.! GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGlnTh 2537 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAAAC : 2597 145 : aLeuTyrLeuLeuAlaLeuArgArgSerLeuThrProCysTyrLeuThrAlaGlyGlyLeuI : 165 !||||||:!!||||||||||||||||||||||||||| ! ||||||||||||||||||| rLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGlyLeuI 2598 : TCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGA : 2660 166 : leArgLeuAsnMetGluSerPheSerGluVal : 175 || !||||||:!!|||!!!|||:!!|||||| leSerLeuAsnLeuGluThrPheAlaGluVal 2661 : TTTCCTTGAATTTGGAGACTTTTGCCGAGGTA : 2692 vulgar: gi|815925234|ref|XP_012247254.1| 123 175 . LHQN01025741.1 2536 2692 + 175 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 2537 2692 175 + . gene_id 4 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 2537 2692 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2537 2692 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 2537 2692 175 + . alignment_id 4 ; Query gi|815925234|ref|XP_012247254.1| ; Align 2537 124 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 0 -> 91 Target range: 1786 -> 2230 1 : MetValLeuValGlnHisAlaCysGlyLeuLeuIleValThr{Gl} >>>> Target In : 15 ||| !:!!||||||||||||||||||||||||! !|||:!!{||} 75 b MetAsnIleValGlnHisAlaCysGlyLeuLeuAsnValSer{Gl}++ 1787 : ATGAATATCGTGCAACACGCGTGCGGATTACTGAACGTCTCT{GG}gt.............. : 1833 16 : tron 1 >>>> {y}TyrArgTyrLysAsnAlaIleAsnAspLeuSerPheAsnThrLysA : 31 p {|}:!! !!!:!||| |||:!:.!. !:!!! ! !!!.!.!:!! ++{y}HisCysPheLysTrpAlaValGluThrValIleThrLysAsnGluL 1834 : ...........ag{G}CATTGCTTCAAGTGGGCAGTGGAAACTGTGATTACCAAGAACGAGA : 1952 32 : spSerGluLysLysAlaLysGluThrTyrGluArgValArgPheSerIleGlnAlaHisGln : 51 ! ! !.!.! :!!!.! ! !!:||||||..!!:!|||||| !||||||:!!||||||||| ysMetHisThrGluValAspAspThrTyrArgLysValArgHisSerIleLysAlaHisGln 1953 : AGATGCACACCGAAGTGGACGACACGTATAGAAAAGTGCGCCATTCGATCAAGGCTCATCAA : 2012 52 : ArgAlaIle{Me} >>>> Target Intron 2 >>>> {t}PheLeuGluLysIleGl : 61 !.!|||!!:{ } 96 bp { }!:!:!! !:!!||||| HisAlaMet{Gl}++ ++{u}TyrIleMetGlnIleGl 2013 : CACGCTATG{GA}gt.........................ag{A}TATATTATGCAGATCGA : 2138 62 : uSerThrHisValThrTyrLeuPheMetCysMetGlyIleValValLeuCysValSerIleT : 82 |..!..!||||||:!!|||||||||!!: :!:!.!:!!|||||||||! !!||||||: uAspValHisValSerTyrLeuPheIleMetValAlaValValValLeuSerPheSerIleS 2139 : AGACGTTCACGTCTCGTACCTGTTCATAATGGTCGCTGTAGTCGTGCTGTCGTTCAGTATCT : 2201 83 : hrMetAlaGlnIleAlaThrMetGluIle : 91 !!:!:!.!::!:!!::! !.!....||| erLeuValArgValSerGlnPheSerIle 2202 : CTCTAGTCAGGGTTAGTCAATTTTCCATT : 2230 vulgar: gi|815925234|ref|XP_012247254.1| 0 91 . LHQN01025741.1 1786 2230 + 139 M 14 42 S 0 2 5 0 2 I 0 71 3 0 2 S 1 1 M 39 117 S 0 2 5 0 2 I 0 92 3 0 2 S 1 1 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1787 2230 139 + . gene_id 5 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 1787 1830 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1787 1830 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 1831 1832 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 1831 1905 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 1904 1905 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 1906 2025 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1906 2025 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 2026 2027 . + . intron_id 2 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 2026 2121 . + . intron_id 2 LHQN01025741.1 exonerate:protein2genome:local splice3 2120 2121 . + . intron_id 1 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 2122 2230 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2122 2230 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1787 2230 139 + . alignment_id 5 ; Query gi|815925234|ref|XP_012247254.1| ; Align 1787 1 42 ; Align 1907 16 117 ; Align 2123 56 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 98 -> 181 Target range: 4993 -> 5242 99 : CysMetSerGlyPheIleIleIleProLeuSerProValIleLeuAspIleIleSerProLe : 119 ||| :!! !|||!!: !:!:|||!!! ! !! !||||||||||||:!!! !||||| CysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLe 4994 : TGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTT : 5054 120 : uAsnGluThrArgHisArgGluGlnMetPheArgValThrTyrPheLeuAspGluAspGlnT : 140 ||||||||||||| ||| ! :!:!:!! !!.! !||||||:!!|||||||||:!!| uAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysT 5055 : GAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAAT : 5117 141 : yrPheTyrProIleTyrPheHisSerLeuTrpCysAlaPheIleIleThrMetIleAlaVal : 160 || !||| !||| |||! !! ! !.! ! !!::!!! ! :!! ! ! yrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCys 5118 : ATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGC : 5177 161 : ThrIleAspSerLeuTyrIleGlnIleValHisHisAspSerAlaLeuPheAlaIleCysGl : 181 .!! !|||:!! !|||:!: ! !|||!!.|||! !!!!!.!|||!!.||||||...|| AlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGl 5178 : GCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGG : 5240 182 : y : 181 | y 5241 : G : 5242 vulgar: gi|815916412|ref|XP_012243371.1| 98 181 . LHQN01025741.1 4993 5242 + 146 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4994 5242 146 + . gene_id 1 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4994 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4994 5242 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4994 5242 146 + . alignment_id 1 ; Query gi|815916412|ref|XP_012243371.1| ; Align 4994 99 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 96 -> 181 Target range: 1576 -> 1831 97 : LeuSerCysMetSerGlyPheIleIleIleProLeuSerProValIleLeuAspIleIleSe : 117 |||! !||| ! !|||! ! !:!: !!:!!!!!||| !:!!||||||:!!||||| LeuPheCysTyrValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSe 1577 : CTGTTTTGCTACGTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTC : 1637 118 : rProLeuAsnGluThrArgHisArgGluGlnMetPheArgValThrTyrPheLeuAspGluA : 138 |||| !||||||:!!||| !!!: !!:!:!! !!.! !||| !|||||||||! rProLysAsnGluSerArgGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAspGluG 1638 : ACCGAAAAACGAATCGCGTGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGACGAGG : 1700 139 : spGlnTyrPheTyrProIleTyrPheHisSerLeuTrpCysAlaPheIleIleThrMetIle : 158 !::!!:!!!:!||| !:!: !|||! !|||!! ! !:!!:!: !.!.:!! luGluHisTyrTyrIleLeuMetGlyHisMetLeuCysValIleThrValValPhePheVal 1701 : AGGAACATTATTACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTC : 1760 159 : AlaValThrIleAspSerLeuTyrIleGlnIleValHisHisAspSerAlaLeuPheAlaIl : 179 !:!!:!! !|||!!!:!!|||!!:.!.||||||!!.|||! !!!!.!|||.!. !:! TyrIleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnVa 1761 : TACATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGCGGATTACTGAACGT : 1823 180 : eCysGly : 181 !! !||| lSerGly 1824 : CTCTGGG : 1831 vulgar: gi|815916412|ref|XP_012243371.1| 96 181 . LHQN01025741.1 1576 1831 + 138 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1577 1831 138 + . gene_id 2 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1577 1831 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1577 1831 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1577 1831 138 + . alignment_id 2 ; Query gi|815916412|ref|XP_012243371.1| ; Align 1577 97 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 102 -> 147 Target range: 8916 -> 9051 103 : PheIleIleIleProLeuSerProValIleLeuAspIleIleSerProLeuAsnGluThrAr : 123 |||:!! !:!:|||!!!:!!|||:!!|||||||||||| !:!!|||||||||:!!||||| PheLeuCysValProPheAlaProIleIleLeuAspIleCysAlaProLeuAsnLysThrAr 8917 : TTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTGCGCGCCACTGAACAAAACGAG : 8977 124 : gHisArgGluGlnMetPheArgValThrTyrPheLeuAspGluAspGlnTyrPheTyrProI : 144 | ! |||! ! :!:!:!! !!.! !|||!:::!!||| !!:||||||!:! !! gLysArgAlaPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMetIleM 8978 : AAAACGTGCGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATGATAA : 9040 145 : leTyrPheHis : 147 !: .!.||| etIleIleHis 9041 : TGATAATACAC : 9051 vulgar: gi|815916412|ref|XP_012243371.1| 102 147 . LHQN01025741.1 8916 9051 + 110 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 8917 9051 110 + . gene_id 3 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 8917 9051 . + . LHQN01025741.1 exonerate:protein2genome:local exon 8917 9051 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 8917 9051 110 + . alignment_id 3 ; Query gi|815916412|ref|XP_012243371.1| ; Align 8917 103 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815912130|ref|XP_012241492.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 50 -> 142 Target range: 11465 -> 11741 51 : TyrAlaLeuTyrValTyrThrThrValValAlaTyrIleThrIleProAlaIleSerLeu : 70 !:! !!:!! !!!.!|||! ! ! ! !! !!:!||| !:!:||| !! !!!! ! PheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArg 11466 : TTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGA : 11523 71 : LeuIleAspPheIleIleProSerAsnHisSerGluGluLysSerPheProIleGluLeu : 90 |||:!::!!! !! !!..!||| !!! !... !..!||| !||| ! LeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuGlnPheValIleProGly 11524 : TTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGA : 11583 91 : AspTyrGlyValAspThrGlnHisTyrPheTyrTyrLeuPheIleHisSerTyrMetThr : 110 !!||| !|||||| ! !.!.|||!:!||||||:!!.!.:!!|||.!! ||| TyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThr 11584 : TATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACA : 11643 111 : IleAlaMetIleAlaAsnLeuIleAlaSerCysAspThrThrTyrMetLeuTyrAlaGln : 130 :!! !!!::!!!.! :!! !..!:!!|||||||||!:!||||||:!! !.!||| ValLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGln 11644 : GTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAA : 11703 131 : HisGlyCysAlaLeuPheAlaIleValSerTyrGlu : 142 ||| !|||!.!|||||||||:!:!.!.!!! ||| HisThrCysGlyLeuPheAlaValAlaGly***Glu 11704 : CACACTTGCGGACTGTTCGCCGTGGCCGGGTGAGAA : 11741 vulgar: gi|815912130|ref|XP_012241492.1| 50 142 . LHQN01025741.1 11465 11741 + 139 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11466 11741 139 + . gene_id 1 ; sequence gi|815912130|ref|XP_012241492.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11466 11741 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11466 11741 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11466 11741 139 + . alignment_id 1 ; Query gi|815912130|ref|XP_012241492.1| ; Align 11466 51 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 270 Query range: 99 -> 188 Target range: 3020 -> 2555 100 : SerPheLeuValIleGlnPheLeuHisLeuPheCysLeuThrMetGlnGlyGlnPheIleIl : 120 !!!|||!!!||| !||| !!!|||:!!|||! !|||!.!:!:||||||||||||:!:|| ThrPhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGlnGlyGlnPheValIl 3020 : ACGTTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGGACAATTTGTGAT : 2960 121 : eAsnSerSerAspGluIleTyrAspAla{Il} >>>> Target Intron 1 >>>> { : 130 ||||:!!! !||||||:!:|||||| !{||} 113 bp { eAsnAlaPheAspGluLeuTyrAspLys{Il}++ ++{ 2959 : AAACGCGTTCGACGAACTGTACGACAAG{AT}gt.........................ag{ : 2815 131 : e}TyrGluAlaSerTrpTyrAsnThrAsnProLysThrGlnAlaLeuTyrLeuLeuAlaLeu : 150 |}||||||:!!..!||||||||| !!.!|||!:!|||||||||||||||:!!||||||||| e}TyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeu 2814 : A}TACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTG : 2757 151 : ArgArgSerLeuThrProCysTyrLeuThrAlaGlyGlyLeuIleArgLeuAsnMetGluSe : 171 |||!!!!!!|||!.!||| ! |||||||||||||||:!!! ! !||||||:!:..!|| ArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSe 2756 : AGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATC : 2694 172 : rPheSerGlu >>>> Target Intron 2 >>>> ValIleLysLeuCysValSerTy : 182 ||||:!!||| 85 bp :!!|||||| !! !|||||||| rPheAlaGlu++ ++IleIleLysAlaSerValSerTy 2693 : GTTCGCAGAGgt.........................agATCATCAAAGCATCTGTTTCCTA : 2576 183 : rTyrThrValLeuArgSer : 188 ||||||||||:!!!:!!!! rTyrThrValMetGlnThr 2575 : CTACACGGTGATGCAGACC : 2556 vulgar: gi|815925234|ref|XP_012247254.1| 99 188 . LHQN01027734.1 3020 2555 - 270 M 30 90 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 44 132 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 2556 3020 270 - . gene_id 1 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation + LHQN01027734.1 exonerate:protein2genome:local cds 2929 3020 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2929 3020 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 2927 2928 . - . intron_id 1 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 2816 2928 . - . intron_id 1 LHQN01027734.1 exonerate:protein2genome:local splice3 2816 2817 . - . intron_id 0 ; splice_site "AG" LHQN01027734.1 exonerate:protein2genome:local cds 2683 2815 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2683 2815 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 2681 2682 . - . intron_id 2 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 2598 2682 . - . intron_id 2 LHQN01027734.1 exonerate:protein2genome:local splice3 2598 2599 . - . intron_id 1 ; splice_site "AG" LHQN01027734.1 exonerate:protein2genome:local cds 2556 2597 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2556 2597 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 2556 3020 270 - . alignment_id 1 ; Query gi|815925234|ref|XP_012247254.1| ; Align 3021 100 90 ; Align 2815 131 132 ; Align 2598 175 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 200 Query range: 0 -> 147 Target range: 1032 -> 315 1 : MetValLeuValGlnHisAlaCysGlyLeuLeuIleValThr{Gl} >>>> Target In : 15 ||||||||||||||||||.!!|||||||||!!! !|||.!!{||} 79 b MetValLeuValGlnHisThrCysGlyLeuPheAlaValAla{Gl}++ 1032 : ATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCC{GG}gt.............. : 986 16 : tron 1 >>>> {y}TyrArgTyrLysAsnAlaIle<->AsnAspLeuSerPheAsnThrL : 30 p {|}||||||!:!||||||:!!||| .!.||| !||| ! !!. !| ++{y}TyrArgPheLysAsnSerIleCysGluAspAsnSerValLysGlyL 985 : ...........ag{A}TACCGCTTCAAGAATTCAATTTGCGAGGACAATAGCGTGAAGGGGA : 863 31 : ysAspSerGluLysLysAlaLysGluThrTyrGluArgValArgPheSerIleGlnAlaHis : 50 || !!! !!!: ! !.!!||||||.!!|||:!!!.!!.! !!||||||||||||!.!||| ysTyrPheAspHisTrpThrLysGluAlaTyrLysAsnAlaCysPheSerIleGlnGlyHis 862 : AGTATTTCGACCACTGGACGAAAGAGGCGTACAAGAACGCGTGTTTCTCCATTCAGGGACAT : 803 51 : GlnArgAlaIle{Me} >>>> Target Intron 2 >>>> {t}PheLeuGluLysIl : 60 ||||||||||||{! } 194 bp { }.!.:!!:!! ! GlnArgAlaIle{As}++ +-{n}LeuIleLysValSe 802 : CAACGTGCTATA{AA}gt.........................ac{T}CTGATCAAGGTGag : 579 61 : eGluSerThrHisValThrTyrLeuPheMetCysMetGlyIleValValLeuCysValSerI : 81 ::::::||| !!:!!!:! !!:!!::: |||: rPheLeuPheProLeuSerTyrAspTyrIleSerArgCysLeuIleCysGlyAsnPheSerL 578 : cttcctttttcctctttcctaCGACTACATTTCGCGTTGTTTAAtctgtggaaatttttcac : 516 82 : leThrMetAlaGlnIleAlaThrMetGluIleCysValAspPheTyrLysPheIleSerPhe : 101 :: !|||:!:::!||| !!!:.!! !:!!|||||||||!:!!:! !|||||| euPheSerAsnGlnLeuSerThrSerAspPheAspIleAspPheTyrArgTyrCysSerPhe 515 : tgttttcaaATCAGCTGAGTACGTCGGATTTCGACATAGACTTCTACAGATATTGCAGTTTT : 456 102 : LeuValIleGlnPheLeuHisLeuPheCysLeuThrMetGlnGlyGlnPheIleIleAsnSe : 122 !:!! !|||.!.:!!||||||||| !:!!! !:!:||||||||||||:!::!::!!|| ThrLeuCysGlnLeuMetHisLeuPheValIleMetLeuGlnGlyGlnPheValLeuAspSe 455 : ACGTTGTGTCAACTGATGCACCTGTTCGTTATCATGCTTCAGGGACAGTTCGTGCTGGATTC : 393 123 : rSerAspGluIleTyrAspAlaIleTyrGluAlaSerTrpTyrAsnThrAsnProLysThrG : 143 |!!!!!:..!|||:!!!!:|||!!:! ! !! !.!! !!||| !||| !!:: . rCysGluArgIleHisGluAlaMet***ValGluGlyIleAsnAsnArgAsnLysArgIleA 392 : GTGCGAGAGAATTCACGAGGCGATGTGAGTAGAGGGAATAAATAATCGCAACAAAAggataa : 330 144 : lnAlaLeuTyrLeu : 147 .. ...:::||| snTyrPhePheLeu 329 : attatttcttcctg : 316 vulgar: gi|815925234|ref|XP_012247254.1| 0 147 . LHQN01027734.1 1032 315 - 200 M 14 42 S 0 2 5 0 2 I 0 75 3 0 2 S 1 1 M 7 21 G 0 3 M 32 96 S 0 2 5 0 2 I 0 190 3 0 2 S 1 1 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 316 1032 200 - . gene_id 2 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation + LHQN01027734.1 exonerate:protein2genome:local cds 989 1032 . - . LHQN01027734.1 exonerate:protein2genome:local exon 989 1032 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 987 988 . - . intron_id 1 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 910 988 . - . intron_id 1 LHQN01027734.1 exonerate:protein2genome:local splice3 910 911 . - . intron_id 0 ; splice_site "AG" LHQN01027734.1 exonerate:protein2genome:local cds 787 909 . - . LHQN01027734.1 exonerate:protein2genome:local exon 787 909 . - . insertions 3 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 785 786 . - . intron_id 2 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 593 786 . - . intron_id 2 LHQN01027734.1 exonerate:protein2genome:local splice3 593 594 . - . intron_id 1 ; splice_site "AC" LHQN01027734.1 exonerate:protein2genome:local cds 316 592 . - . LHQN01027734.1 exonerate:protein2genome:local exon 316 592 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 316 1032 200 - . alignment_id 2 ; Query gi|815925234|ref|XP_012247254.1| ; Align 1033 1 42 ; Align 909 16 21 ; Align 885 23 96 ; Align 592 56 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815912130|ref|XP_012241492.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 50 -> 142 Target range: 1257 -> 981 51 : TyrAlaLeuTyrValTyrThrThrValValAlaTyrIleThrIleProAlaIleSerLeuLe : 71 !:! !!:!! !!!.!|||! ! ! ! !! !!:!||| !:!:||| !! !!!! !:! PheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArgMe 1257 : TTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGAAT : 1197 72 : uIleAspPheIleIleProSerAsnHisSerGluGluLysSerPheProIleGluLeuAspT : 92 !:!::!!! !! !!..!||| !!! !... ! !! !! !:!! ! !!| tValAsnSerTyrLysThrGlnAsnIleThrProSerLeuProValValValProGlyTyrT 1196 : GGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGATATT : 1134 93 : yrGlyValAspThrGlnHisTyrPheTyrTyrLeuPheIleHisSerTyrMetThrIleAla : 112 || !|||||| ! !.!.|||!:!||||||:!!.!.:!!|||.!! |||:!! ! yrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeu 1133 : ACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTG : 1074 113 : MetIleAlaAsnLeuIleAlaSerCysAspThrThrTyrMetLeuTyrAlaGlnHisGlyCy : 133 !!::!!!.! :!! !..!:!!|||||||||!:!||||||:!! !.!|||||| !|| IleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCy 1073 : ATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTG : 1011 134 : sAlaLeuPheAlaIleValSerTyrGlu : 142 |!.!|||||||||:!:!.!.!!! ||| sGlyLeuPheAlaValAlaGly***Glu 1010 : CGGACTGTTCGCCGTGGCCGGGTGAGAA : 982 vulgar: gi|815912130|ref|XP_012241492.1| 50 142 . LHQN01027734.1 1257 981 - 128 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 982 1257 128 - . gene_id 1 ; sequence gi|815912130|ref|XP_012241492.1| ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 982 1257 . - . LHQN01027734.1 exonerate:protein2genome:local exon 982 1257 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 982 1257 128 - . alignment_id 1 ; Query gi|815912130|ref|XP_012241492.1| ; Align 1258 51 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 219 Query range: 300 -> 404 Target range: 4590 -> 4097 301 : CysIleThrAspTrpGlnGlnAsnAsnLysIleGlyLeuThrThrTyrSerMetLeuLeuVa : 321 |||.!! !!!:||| !:!!!:!:!! ! !||| !||||||! !:!: !||||| CysPhe***GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuVa 4590 : tgctTCTAGGAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGT : 4530 322 : lSerLeuThrPheAsnMetPheLeuLeuCysTyrIleGlyAsnLeuLeuIleGluLys >> : 341 |:!!:!!..! ||| ||||||:::|||||||||.!!:!! !|||! !|||:!! lAlaValValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4529 : TGCTGTTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt.. : 4468 342 : >> Target Intron 1 >>>> SerThrSerValGlyIleSerCysTyrMetIleAspT : 353 92 bp !!! !!.!|||||| ! ! !||||||! !|||| ++CysLeuLysValGlyGluValValTyrMetThrAspT 4467 : .......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATT : 4342 354 : rpTyrArgLeuProValLysThrValGlnAspLeuIleLeuIleIleAlaMetSerAsnSer : 373 ||||| !|||||| !!:!! !:!!! ||||||||||||||||||.!! |||||| ! rpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnVal 4341 : GGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTG : 4282 374 : ProAlaLysIleSerAlaGlyArgIlePheLeuLeuSerLeuThrThrPheGlyAsn >>> : 393 !!.!:!!|||!!!||||||:::|||||| :::|||||| !|||||||||:!! ValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4281 : GTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt... : 4220 394 : > Target Intron 2 >>>> ValLeuLysThrSerPheAlaTyrLeuAsnPheVal : 404 89 bp |||:!!||||||.!!|||||||||||||||.!.:!! ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeu 4219 : ......................agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTT : 4098 vulgar: gi|815911896|ref|XP_012241389.1| 300 404 . LHQN01027980.1 4590 4097 - 219 M 40 120 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4098 4590 219 - . gene_id 1 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4590 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4590 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4223 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 2 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 2 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 1 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4098 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4098 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4098 4590 219 - . alignment_id 1 ; Query gi|815911896|ref|XP_012241389.1| ; Align 4591 301 120 ; Align 4379 341 156 ; Align 4134 393 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 210 Query range: 304 -> 408 Target range: 4590 -> 4097 305 : CysIleThrAspTrpGlnGlnAsnAsnLysIleGlyLeuThrThrTyrSerLeuLeuLeuIl : 325 |||.!! !!!:||| !:!!!:!:!! ! !||| !||||||! !:!! !|||:! CysPhe***GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuVa 4590 : tgctTCTAGGAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGT : 4530 326 : eSerLeuThrPheAsnMetPheLeuLeuCysTyrIleGlyAspLeuLeuIleGluLys >> : 345 !:!!:!!..! ||| ||||||:::|||||||||.!!||| !|||! !|||:!! lAlaValValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4529 : TGCTGTTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt.. : 4468 346 : >> Target Intron 1 >>>> SerThrAsnValGlyIleSerCysCysMetIleAspT : 357 92 bp !!! !!!.|||||| ! ! !! !|||! !|||| ++CysLeuLysValGlyGluValValTyrMetThrAspT 4467 : .......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATT : 4342 358 : rpTyrHisLeuProAlaLysSerValGlnAspLeuValLeuIleIleAlaMetSerAsnAsn : 377 |||||:!!|||||| !!:!!!!:!!! ||||||:!!|||||||||.!! |||||| rpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnVal 4341 : GGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTG : 4282 378 : ProAlaLysIleSerAlaGlyArgIleValAsnLeuSerLeuSerThrPheAlaSer >>> : 397 !!.!:!!|||!!!||||||:::||| ::::::||||||! !||||||!.!..! ValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4281 : GTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt... : 4220 398 : > Target Intron 2 >>>> ValLeuLysThrSerPheAlaTyrLeuAsnPheLeu : 408 89 bp |||:!!||||||.!!|||||||||||||||.!.||| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeu 4219 : ......................agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTT : 4098 vulgar: gi|815911898|ref|XP_012241390.1| 304 408 . LHQN01027980.1 4590 4097 - 210 M 40 120 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4098 4590 210 - . gene_id 1 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4590 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4590 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4223 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 2 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 2 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 1 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4098 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4098 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4098 4590 210 - . alignment_id 1 ; Query gi|815911898|ref|XP_012241390.1| ; Align 4591 305 120 ; Align 4379 345 156 ; Align 4134 397 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 220 Query range: 22 -> 161 Target range: 444 -> 36 23 : GlnTyrThrLeuGlnMetCysGlnTrpLeuLeuLysLeuIleGlyIleTrpProLeuLeuAsnA : 44 .!.|||!:!|||||| ! !!:!||| !:!!||| !||||||! !|||||| . AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpPro---------G 444 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCA---------C : 390 45 : snHisThrSerArgLeuGluGlnLeuLeuSerIleValLeuMetIleThrCysTyrSerSerIl : 65 !. !:!!|||!.!||||||::! !:!!||| !:!!|||! :!:! !||||||!!!:!!|| lnPheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIl 389 : AGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAAT : 327 66 : ePhePheIleIleLeuProSerGlyHisHisPhePhePheValGluLysAsnLeuTyrMetLys : 86 |.!.||| |||:!!|||!!!..! |||.!..!..!.! !:!! !!.!!!!|||! !||| eLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLys 326 : ACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAA : 264 87 : MetLysMetLeuGlyProValSerPheCysValPheAlaThrValLysTyrSerTyrLeuAlaA : 108 :!!|||!!:|||||||||:!!||| !!! ||||||..!! !:!!!..|||!!! ||| !! ValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuL 263 : GTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGC : 198 109 : rgLysGlyAlaPheLeuGlnSerCysIleArgGlnLeuArgAsnAspTrpLysArgValGlnAs : 129 !::! !! ! !:!!!!. !! !:!!!.!!!.:!!..!!.!||||||!:!! !..! euArgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrAr 197 : TGCGACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgag : 135 130 : pProSerHisArgAlaIleMetLeuLysTyrAlaGlyValSerArgLysLeuIleThrValCys : 150 ... ::: :::||||||||||||||| ! !!|||||| ! ! ! ! !!||| gLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCys 134 : aaaggagaagaaagaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGT : 72 151 : AlaValPheIleTyrThrGlyGlyMetSerTyr : 161 |||:!!||||||:!! !||| !:!:.!!||| AlaIlePheIleHisGlyGlyIleLeuGlyTyr 71 : GCGATCTTCATACACGGTGGTATACTTGGATAT : 37 vulgar: gi|815911906|ref|XP_012241394.1| 22 161 . LHQN01027980.1 444 36 - 220 M 18 54 G 3 0 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 37 444 220 - . gene_id 1 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 37 444 . - . LHQN01027980.1 exonerate:protein2genome:local exon 37 444 . - . insertions 0 ; deletions 3 LHQN01027980.1 exonerate:protein2genome:local similarity 37 444 220 - . alignment_id 1 ; Query gi|815911906|ref|XP_012241394.1| ; Align 445 23 54 ; Align 391 44 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 146 Query range: 338 -> 398 Target range: 4381 -> 4201 339 : GlnCysSerGluIleGlyThrValSerTyrGluIleAspTrpTyrAsnLeuProAlaLysGl : 359 ||||||! !:!!:!!||| !||| !||| !! !||||||||| !!|||||| !!:!.. GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 360 : uAlaTyrAspLeuIleLeuLeuIleSerIleSerGlnTyrProProLysLeuThrAlaGlyL : 380 ! ! !||||||||||||:!!|||!!! !|||.!. ! !:!!:!!|||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 381 : ysIleIleGluLeuSerLeuAsnThrPheSerSerValAlaLysThrSerLeuVal : 398 |||||......:::|||||| !!||||||.!!..!|||::!:!!|||!:!|||||| ysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeuVal 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTTGTT : 4202 vulgar: gi|815911906|ref|XP_012241394.1| 338 398 . LHQN01027980.1 4381 4201 - 146 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4202 4381 146 - . gene_id 2 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4202 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4202 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4202 4381 146 - . alignment_id 2 ; Query gi|815911906|ref|XP_012241394.1| ; Align 4382 339 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 205 Query range: 23 -> 154 Target range: 441 -> 48 24 : TyrValThrLysHisSerLysTrpIleLeuGlnSerIleGlyIleTrpProAlaAlaValGlyA : 45 ||| ! !:!! !:!::!||| :!!:!!|||||||||! !|||||| ! ! !..!: TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerA 441 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGA : 378 46 : spValLysLysLeuLeuProLysIleAlaIleAlaLeuSerAsnPheValLeuLeuPheAlaIl : 66 !!:!!:!!!:! !:!! !!::!||| !! !!.!:!!!!! !! !!.!:!!||||||:!!|| snLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIl 377 : ACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGAT : 315 67 : eIleProCysIleLeuHisIleIlePheGluGluLysAspThrIleMetArgLeuLysLeuSer : 87 |||||||||| ||||||:!!!!:.!.|||:!! ! ! ! !! !!:!:!!|||:!! ! eIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeu 314 : AATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTC : 252 88 : GlyLeuLeuSerPheCysCysThrSerLeuMetLysTyrTrpAlaLeuThrLeuArgLysProA : 109 |||! !|||||| !!! !!!!:!!!!:!..||| !||| !||||||::: !! GlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysT 251 : GGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAA : 186 110 : rgIleLysGlyCysIleGluGlnValCysIleAspTrpGluGlnValGluLeuHisLysAspAr : 130 !||| ! !! !:!!.!.!!.:!! ! !||||||..! !..! ::: :: hrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLy 185 : CCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaa : 123 131 : gGluIleMetLeuLysTyrGlyArgMetGlyArgAsnLeuThrIleIleCysAlaValPheMet : 151 :|||:::||||||||||||!.!!:!.!..!!||| !! !.!!|||.!!||||||:!!|||!!: sGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIle 122 : agaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATA : 60 152 : TyrThrGly : 154 :!! !||| HisGlyGly 59 : CACGGTGGT : 49 vulgar: gi|815911908|ref|XP_012241395.1| 23 154 . LHQN01027980.1 441 48 - 205 M 131 393 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 49 441 205 - . gene_id 1 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 49 441 . - . LHQN01027980.1 exonerate:protein2genome:local exon 49 441 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 49 441 205 - . alignment_id 1 ; Query gi|815911908|ref|XP_012241395.1| ; Align 442 24 393 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 183 Query range: 301 -> 399 Target range: 4590 -> 4204 302 : CysIleThrAspTrpGluGlnSerAsnThrIleSerLeuThrThrTyrThrMetLeuLeuIl : 322 |||.!! !!!:||| !:!!|||:!!.!! !! !||| !||||||! !:!: !|||:! CysPhe***GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuVa 4590 : tgctTCTAGGAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGT : 4530 323 : eSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuIleGluLys >> : 342 !:!!:!!..! ||| |||::::::|||||||||.!!!!: !|||! !|||:!! lAlaValValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4529 : TGCTGTTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt.. : 4468 343 : >> Target Intron 1 >>>> SerSerAsnValGlyLeuSerCysPheMetIleAspT : 354 92 bp !!!! !!!.|||||| ! ! !!:!|||! !|||| ++CysLeuLysValGlyGluValValTyrMetThrAspT 4467 : .......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATT : 4342 355 : rpPheHisLeuProThrLysThrIleHisGlyLeuIleLeuIleIleAlaMetSerAsnAsn : 374 ||!:!:!!|||||| !!:!! !|||! !! !|||||||||||||||.!! |||||| rpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnVal 4341 : GGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTG : 4282 375 : ProValLysIleThrAlaGlyArgIleAlaAspLeuSerLeuSerThrPheGlySerValLe : 395 !|||:!!||||||||||||:::||| :::||||||! !|||||||||..!||| ValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSe 4281 : GTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAG : 4219 396 : uLysSerSerLeu : 399 !:!!!!!!:!||| rGluThrAsnLeu 4218 : TGAAACTAATCTT : 4205 vulgar: gi|815911908|ref|XP_012241395.1| 301 399 . LHQN01027980.1 4590 4204 - 183 M 40 120 5 0 2 I 0 88 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4205 4590 183 - . gene_id 2 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4590 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4590 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4205 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4205 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4205 4590 183 - . alignment_id 2 ; Query gi|815911908|ref|XP_012241395.1| ; Align 4591 302 120 ; Align 4379 342 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911896|ref|XP_012241389.1| PREDICTED: odorant receptor 22c-like [Bombus impatiens] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 319 Query range: 21 -> 279 Target range: 1073 -> 296 22 : AspTyrValThrLysHisAsnLysTrpValLeuAsnSerIleGlyMetTrpProValValAl : 42 |||||| ! !:!! |||::!|||!.!:!!!!.||||||||| |||||| ! !:! AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSe 1073 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTC : 1013 43 : aGluGlyIleAspLysPheLeuProLysIleIleIleGlyPheSerAsnLeuValSerLeuP : 63 !..!..!:!!!!:!:!.!!:!! !!::!|||:!:! !! !.!!!!! !! !!.! !|||| rSerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuP 1012 : GTCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTAT : 950 64 : heThrValValGlnCysIleLeuHisIleIleLeuGluGluLysAspAlaLeuLeuArgLeu : 83 |||||:!!:!!! ||| ||||||:!!!!:||||||:!!:!! ! !! ! !!:!:!! heThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysVal 949 : TCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTG : 890 84 : ArgLeuLeuGlyLeuAlaCysPheAlaSerIleAsnLeuLeuLysTyrTrpAlaValIleVa : 104 !:!:!!||||||! ! ! !! ! ! !.!! !:!!:!!!..||| !:!!:!::! LysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLe 889 : AAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCT : 827 105 : lArgLysProAsnIleGluTyrCysIleLysGlnValGlnThrAspTrpLysGlnValGluP : 125 !|||::: !!.!|||...:!!! !.!!!!.!!.:!!:!!|||||||||!:! !..! uArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetA 826 : GCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtga : 764 126 : heGlnLysAsnArgMetLeuMetLeuLysTyrGlyLysIleGlyArgAspLeuThrIleTyr : 145 ::::::...::: :::||||||||||||!.!|||.!!.!!||| !! !.!!|||! ! rgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSer 763 : gaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCT : 704 146 : SerAlaValPheMetTyrSerAlaGlyIleCysTyrValThrIleMetGlnTyrAlaMetGl : 166 !!!.!!:!!|||!!::!!.!!!.! !:!! ! ||| !..!!!:! !!:!.!!! ! CysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMe 703 : TGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGAT : 641 167 : yMetSerLeuLysAlaAsnAsnArgThrIle<->ArgValLeuValTyrProThrTyrSerG : 186 !:!: !:!! !.!|||.!.! !! !||| ||||||||| !! |||! !|||!.!| tValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysG 640 : GGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAG : 578 187 : lyPhePheAspAlaGlnLysSerProIleTyrGluIleValTyrValLeuGlnCysMetCys : 206 ||.!!.!! !.!.!.! !!:! !!!!: !!||||||||| !:!!! !|||! !:!:! ! lyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSer 577 : GGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCC : 518 207 : ThrPheValPheAsnSerValThrValGlyCysCysGlyLeuAlaAlaLeuPheValThrHi : 227 !|||:!! |||!!! !.!!:!!.!! ! .!!|||.!!::! !.!...!:!!|| GlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHi 517 : GGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACA : 455 228 : sAlaCysGlyGlnIleAspValValIleSerGlnLeuAsnAspLeuValGluGlyLysPheA : 248 ||||! !||||||:!:! !||||||!!:! !..!:!!.!.|||!!!|||...! ! ! sAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgA 454 : CGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGAC : 392 249 : laLysLysAsnSerAspProAsnThrArgLeuMetGluIleValLysHisHisIleArgIle : 268 !!:! !!!...!|||! ! ! !..!:!! ! !||||||:!! ! |||:!:|||:!: rgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgVal 391 : GCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTG : 332 269 : LeuLysPheSerAlaValIleGluThrValLeu : 279 ||||||! !..!:!!:!:!!: !:!!||| LeuLys***ValCysLeuLeuAspLeuIleLeu 331 : TTGAAGTAAGTATGTTTGTTGGATTTGATTTTG : 297 vulgar: gi|815911896|ref|XP_012241389.1| 21 279 . LHQN01028641.1 1073 296 - 319 M 155 465 G 0 3 M 103 309 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 297 1073 319 - . gene_id 1 ; sequence gi|815911896|ref|XP_012241389.1| ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 297 1073 . - . LHQN01028641.1 exonerate:protein2genome:local exon 297 1073 . - . insertions 3 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 297 1073 319 - . alignment_id 1 ; Query gi|815911896|ref|XP_012241389.1| ; Align 1074 22 465 ; Align 606 177 309 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911898|ref|XP_012241390.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 299 Query range: 26 -> 289 Target range: 1070 -> 278 27 : TyrValThrLysHisAsnLysTrpValLeuAsnSerIleGlyIleTrpProAlaMetValGl : 47 ||| ! !:!! |||::!|||!.!:!!!!.||||||||| !|||||| ! !.. TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSerSe 1070 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCGTC : 1010 48 : uGlyIleGlyLysPheLeuProArgIleAlaIleGlyLeuSerAsnLeuIleLeuPhePheT : 68 !..!:!!! !!:!.!!:!! !!|||||| !! !! !:!!!!! !! ! !:!!.!.|||| rAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheT 1009 : GAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCA : 947 69 : hrLeuValGlnCysValLeuHisIleValLeuGluGlnLysAspProLeuLeuArgLeuLys : 88 ||:!!:!!! ||| !||||||:!!:!!||||||:!!:!! ! !! ! !!:!:!!||| hrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLys 946 : CGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAA : 887 89 : IleLeuGlyLeuThrCysPheSerPheIleSerLeuMetLysTyrTrpAlaLeuThrIleAr : 109 |||||||||! ! ! !! !!!! ! .!!!!!:!!!!:!..||| !||| !:!:|| IleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuAr 886 : ATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCG : 824 110 : gLysProLysIleGluTyrCysIleGluGlnLeuTyrAlaAspTrpLysGlnIleGluTyrG : 130 |::: !! |||...:!!! !.!!.!.!!.:!! ! .!!||||||!:! !! : gArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgL 823 : ACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaa : 761 131 : lnArgAspArgLysLeuMetLeuLysTyrGlyLysIleGlyArgArgLeuThrValTyrSer : 150 ::... :::::::::||||||||||||!.!|||.!!.!!||| ! !.!!:!!! !!!! ysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCys 760 : aggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGT : 701 151 : AlaValPheMetTyrSerGlyGlyIleIleTyrHisThrValMetGlnTyr<->AlaIleGl : 170 .!!:!!|||!!::!!.!!||| !:!! !||| !..!:!!! !!:! .!!!!:! ThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetVa 700 : ACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGT : 638 171 : ySerTyrValAspGluPheAsnHisThrIleLysLeuLeuValTyrProThrTyrSerGlyL : 191 ! ! |||! .!. !.! ! !:!:::::!!||| !! |||! !|||!.!|||| lValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyL 637 : TGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGC : 575 192 : euTyrAspValGlnLysSerProValTyrGluLeuValTyrValLeuGlnCysIleCysGly : 211 || ! |||.!.! !!:! !!:!! !!|||:!!||| !:!!! !|||! !:!!! !||| euLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGly 574 : TCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGA : 515 212 : TyrValPheAspThrValThrValGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisTh : 232 !:!:!! :!!||| !.!!:!!.!!!.! .!!|||.!!::! !.!..!!:!!|||.! PheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAl 514 : TTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGC : 452 233 : rCysGlyGlnIleAspValIleMetSerArgLeuAsnAspLeuIleAspGlyLysPheSerL : 253 !! !||||||:!:! !|||:!!|||! ! !:!!.!.|||!!!:!:..!! ! ! !!! aSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgA 451 : GTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCA : 389 254 : ysGluAsnSerAsnThrSerValArgLeuMetGluIleValGluHisHisIleArgThrLeu : 273 :!! !!!...!:!! !! !! !..!:!! ! !||||||||| ! |||:!:|||..!||| rgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeu 388 : GAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG : 329 274 : LysPheSerAlaMetValGluThrValLeuGlnGluValCysPheLeu : 289 |||! !..!:!!:!!!!: !:!!|||! ! !! ! |||||| Lys***ValCysLeuLeuAspLeuIleLeuProMetGlyValPheLeu 328 : AAGTAAGTATGTTTGTTGGATTTGATTTTGCCGATGGGTGTGTTTCTC : 279 vulgar: gi|815911898|ref|XP_012241390.1| 26 289 . LHQN01028641.1 1070 278 - 299 M 141 423 G 0 3 M 122 366 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 279 1070 299 - . gene_id 1 ; sequence gi|815911898|ref|XP_012241390.1| ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 279 1070 . - . LHQN01028641.1 exonerate:protein2genome:local exon 279 1070 . - . insertions 3 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 279 1070 299 - . alignment_id 1 ; Query gi|815911898|ref|XP_012241390.1| ; Align 1071 27 423 ; Align 645 168 366 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911912|ref|XP_012241397.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 265 Query range: 22 -> 279 Target range: 1070 -> 296 23 : TyrValThrLysHisAsnLysTrpIleLeuAsnCysIleGlyIleTrpProThrValLeuLy : 43 ||| ! !:!! |||::!||| :!!!!. !!|||||| !|||||| ! !! !.. TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSerSe 1070 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCGTC : 1010 44 : sGlyMetSerLysPheLeuProLysLeuValIleGlyPheSerAsnLeuMetProSerPheI : 64 !..!:!:..!!:!.!!:!! !!::!:!!:!!! !! !.!!!!! !! ! ! !|||! rAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheT 1009 : GAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCA : 947 65 : leIleValGlnCysValLeuTyrIleValLeuGluGluLysAsnProLeuLeuArgLeuArg : 84 |||:!!! ||| !|||:!!:!!:!!||||||:!!:!!!.! !! ! !!:!:!!!:! hrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLys 946 : CGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAA : 887 85 : PheCysSerLeuAlaTrpTyrSerLeuIleAsnLeuMetLysTyrTrpAlaLeuIleAlaAr : 105 .!. !.!!! ! ! ! :!!!!!:!!.!! !:!!!!:!..||| !|||:!: !|| IleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuAr 886 : ATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCG : 824 106 : gLysProAspIleGluTyrCysIleLysTrpMetGlnThrAspTrpLysGlnValGluPheG : 126 |::: ! !|||...:!!! !.!!!!. |||:!!|||||||||!:! !..! : gArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgL 823 : ACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaa : 761 127 : lnArgAsnArgMetLeuMetLeuLysTyrGlyLysIleGlyArgAspLeuThrIleTyrSer : 146 ::......::: :::||||||||||||!.!|||.!!.!!||| !! !.!!|||! !!!! ysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCys 760 : aggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGT : 701 147 : AlaValPheMetTyrSerAlaGlyMetCysTyrThrThrIleMetGlnTyr<->GlyMetAr : 166 .!!:!!|||!!::!!.!!!.! !:!: ! ||| !..!!!:! !!:! !||| ThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetVa 700 : ACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGT : 638 167 : gMetSerLeuLysGluAsnAsnArgThrLeuArgIleLeuValTyrProThrTyrSerGlyL : 187 !:!: !:!! !.!..!.!.!! !! !||||||:!:||| !! |||! !|||!.!|||| lValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyL 637 : TGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGC : 575 188 : euPheAspIleGlnLysSerProValTyrGluIleValTyrValPheGlnCysIleTyrAla : 207 ||.!! :!!.!.! !!:! !!:!! !!||||||||| !:!!! |||! !:!!! !!.! euLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGly 574 : TCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGA : 515 208 : PheThrCysIleSerValThrValGlyCysCysGlyLeuAlaAlaLeuPheAlaThrHisAl : 228 |||! !...! !!!! !.!!:!!.!! ! .!!|||.!!::! !.!..!!:!!||||| PheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAl 514 : TTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGC : 452 229 : aCysGlyGlnIleAspValValIleSerGlnLeuAspAspLeuValAspGlyThrPheSerL : 249 |! !||||||:!:! !||||||!!:! !..!:!!!!:|||!!!|||..!! !.!! !!! aSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgA 451 : GTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCA : 389 250 : ysLysSerSerAsnProAspThrArgLeuMetGluIleValLysHisHisIleArgIleLeu : 269 :! !!.!..!:!!! ! ! !..!:!! ! !||||||:!! ! |||:!:|||:!:||| rgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeu 388 : GAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG : 329 270 : LysPheSerAlaMetIleGluThrValLeu : 279 |||! !..!:!!:!:!!: !:!!||| Lys***ValCysLeuLeuAspLeuIleLeu 328 : AAGTAAGTATGTTTGTTGGATTTGATTTTG : 297 vulgar: gi|815911912|ref|XP_012241397.1| 22 279 . LHQN01028641.1 1070 296 - 265 M 141 423 G 0 3 M 116 348 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 297 1070 265 - . gene_id 1 ; sequence gi|815911912|ref|XP_012241397.1| ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 297 1070 . - . LHQN01028641.1 exonerate:protein2genome:local exon 297 1070 . - . insertions 3 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 297 1070 265 - . alignment_id 1 ; Query gi|815911912|ref|XP_012241397.1| ; Align 1071 23 423 ; Align 645 164 348 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 287 Query range: 23 -> 286 Target range: 1070 -> 278 24 : TyrValThrLysHisSerLysTrpIleLeuGlnSerIleGlyIleTrpProAlaAlaValGl : 44 ||| ! !:!! !:!::!||| :!!:!!||||||||| !|||||| !:!! !.. TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSerSe 1070 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCGTC : 1010 45 : yAspValLysLysLeuLeuProLysIleAlaIleAlaLeuSerAsnPheValLeuLeuPheA : 65 !:!!:!!:!!!:!:!!:!! !!::!||| !! !!.!:!!!!! !! !!.!:!!||||||. rAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheT 1009 : GAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCA : 947 66 : laIleIleProCysIleLeuHisIleIlePheGluGluLysAspThrIleMetArgLeuLys : 85 !!|||||||||||| ||||||:!!!!:.!.|||:!!:!! ! ! !! !!:!:!!||| hrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLys 946 : CGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAA : 887 86 : LeuSerGlyLeuLeuSerPheCysCysThrSerLeuMetLysTyrTrpAlaLeuThrLeuAr : 106 :!! !|||! !|||||| !!! !!!!:!!!!:!..||| !||| !||||| IleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuAr 886 : ATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCG : 824 107 : gLysProArgIleLysGlyCysIleGluGlnValCysIleAspTrpGluGlnValGluLeuH : 127 |::: !! !|||::: !! !.!!.!.!!.:!! ! !||||||..! !..! gArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgL 823 : ACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaa : 761 128 : isLysAspArgGluIleMetLeuLysTyrGlyArgMetGlyArgAsnLeuThrIleIleCys : 147 ::: :::||||||||||||||||||!.!!:!.!..!!||| !! !.!!||| !||| ysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCys 760 : aggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGT : 701 148 : AlaValPheMetTyrThrGlyGlyThrIleTyrHisSerIleLeuGlnTyr<->AlaIleGl : 167 .!!:!!|||!!::!! !||| ! ! !||| ! !!!: ! !!:! .!!!!:! ThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetVa 700 : ACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGT : 638 168 : yThrPheValAspGluHisAsnArgThrIleLysProLeuValTyrProThrTyrSerAlaL : 188 !..! ! |||! .!..!.!.!! !! !:!:::: !||| !! |||! !|||!.!!.!| lValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyL 637 : TGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGC : 575 189 : euTyrAspValGlnSerSerProIleTyrAspLeuValTyrValIleHisCysMetCysGly : 208 || ! |||.!.!!!!:! !!!!: !!!!::!!||| !:!! !!!.! !:!:! !||| euLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGly 574 : TCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGA : 515 209 : TyrValMetTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisTh : 229 !:!:!! ! !!!!!! !.!! !.!!!.! .!!|||.!!::! !.!..!!:!!|||.! PheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAl 514 : TTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGC : 452 230 : rCysGlyGlnIleAspIleIleIleSerArgLeuAsnAspLeuValArgGlyGluTyrMetL : 250 !! !||||||:!:! !:!::!!!!:! ! !:!!.!.|||!!!|||!!!! !! ! ! aSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgA 451 : GTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCA : 389 251 : ysGluThrLeuAsnLeuAsnThrArgLeuIleGluIleValGluArgHisLeuArgIleLeu : 270 :!! !! ! !:!!! ! ! !..!:!! !|||||||||!:!|||||||||:!:||| rgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeu 388 : GAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG : 329 271 : ArgPheSerAlaAlaValGluMetValLeuGlnGluValCysPheLeu : 286 !:!! !..! !:!!!!::!!:!!|||! ! !! ! |||||| Lys***ValCysLeuLeuAspLeuIleLeuProMetGlyValPheLeu 328 : AAGTAAGTATGTTTGTTGGATTTGATTTTGCCGATGGGTGTGTTTCTC : 279 vulgar: gi|815911908|ref|XP_012241395.1| 23 286 . LHQN01028641.1 1070 278 - 287 M 141 423 G 0 3 M 122 366 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 279 1070 287 - . gene_id 1 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 279 1070 . - . LHQN01028641.1 exonerate:protein2genome:local exon 279 1070 . - . insertions 3 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 279 1070 287 - . alignment_id 1 ; Query gi|815911908|ref|XP_012241395.1| ; Align 1071 24 423 ; Align 645 165 366 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 243 Query range: 22 -> 251 Target range: 1073 -> 389 23 : GlnTyrThrLeuGlnMetCysGlnTrpLeuLeuLysLeuIleGlyIleTrpProLeuLeuAs : 43 .!.|||!:!|||||| ! !!:!||| !:!!||| !|||||| !|||||| AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpPro-------- 1073 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCA-------- : 1019 44 : nAsnHisThrSerArgLeuGluGlnLeuLeuSerIleValLeuMetIleThrCysTyrSerS : 64 .!. !:!!|||!.!||||||::!:!!:!!||| !:!!|||! :!:! !||||||!!!: -GlnSerSerSerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrA 1018 : -CAGTCCTCGTCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCG : 959 65 : erIlePhePheIleIleLeuProSerGlyHisHisPhePhePheValGluLysAsnLeuTyr : 84 !!:!!.!.|||! |||:!!|||!!!..!! ||| ! .!..!.! !:!!:!!!.!!!!||| laValLeuPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyr 958 : CAGTACTATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTAC : 899 85 : MetLysMetLysMetLeuGlyProValSerPheCysValPheAlaThrValLysTyrSerTy : 105 ! !|||:!!|||!!:|||||||||:!!||| !!! ||||||..!! !:!!!..|||!!! ThrLysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMe 898 : ACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCAT : 836 106 : rLeuAlaArgLysGlyAlaPheLeuGlnSerCysIleArgGlnLeuArgAsnAspTrpLysA : 126 ||| !! !::! !! ! !:!!!:: !! !.!!!.!!!.:!!..!!.!||||||!:!! tLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgT 835 : GCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAA : 773 127 : rgValGlnAspProSerHisArgAlaIleMetLeuLysTyrAlaGlyValSerArgLysLeu : 146 !..!... ... ::: |||||||||||||||||| ! !!|||||| ! ! hrThrMetArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAla 772 : CGACGAtgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCG : 713 147 : IleThrValCysAlaValPheIleTyrThrGlyGlyMetSerTyrHisThrValAlaGlnPh : 167 ! ! !|||.!!:!!||||||:!! !||| !:!:.!!||| !..!:!!.!! !|| AlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPh 712 : GCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTT : 650 168 : eLeuSerLysGluArgThrArgGluAsnTyrThr<-><->ValArgProLeuAlaTyrIleG : 186 | !!!!! !! !..! !! !||| ! ||| :!!||| !||| !!! ! eThrThrMetValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProM 649 : CACCACGATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAA : 587 187 : lyTyrAspProPhePheAspThrGlnSerSerProThrTyrGluIleValPheLeuLeuHis : 206 !||| ! !.!!.!! ..!.!.!!!!:! !!! ! !!|||||||||.!!|||! !!!. etTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGln 586 : TGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAG : 527 207 : CysPheAlaAlaMetIleMetTyrSerIleThrThrValAlaTyrGlyLeuAlaAlaValPh : 227 ! !.!!:!!!.!.!.||| ! !!!!!! !.!!! ! !!.! .!!|||.!!::!!.!.! PheLeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLe 526 : TTTCTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCT : 464 228 : eValThrHisValCysGlyGlnIleGlnIleGlnIleAlaArgLeuGlnAsnLeuValGluS : 248 ...!:!!|||!.!! !||||||:!: :!: !!: ! !:!!:!!:!!!!!|||.... uThrSerHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerA 463 : AACATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTG : 401 249 : erLysAspArg : 251 .! ! ||| spAlaArgArg 400 : ATGCGAGACGC : 390 vulgar: gi|815911906|ref|XP_012241394.1| 22 251 . LHQN01028641.1 1073 389 - 243 M 18 54 G 3 0 M 135 405 G 0 6 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 390 1073 243 - . gene_id 1 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 390 1073 . - . LHQN01028641.1 exonerate:protein2genome:local exon 390 1073 . - . insertions 6 ; deletions 3 LHQN01028641.1 exonerate:protein2genome:local similarity 390 1073 243 - . alignment_id 1 ; Query gi|815911906|ref|XP_012241394.1| ; Align 1074 23 54 ; Align 1020 44 405 ; Align 609 179 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 287 Query range: 85 -> 175 Target range: 7969 -> 7629 86 : IleAlaThrMetGluIleCysValAspPheTyrLysPheIleSerPheLeuValIleGlnPh : 106 :!!:!!||||||.!. !||||||!!:|||||||||!:! !.!!|||||||||:!:|||.! ValSerThrMetAsnProCysValGluPheTyrLysTyrCysGlyPheLeuValValGlnLe 7969 : GTATCCACGATGAACCCTTGCGTGGAGTTCTACAAGTATTGCGGTTTCTTGGTGGTGCAACT : 7909 107 : eLeuHisLeuPheCysLeuThrMetGlnGlyGlnPheIleIleAsnSerSerAspGluIleT : 127 .:!!||||||.!!! !|||:!!!!:||||||!!.|||:!!||| !||| !||| !! !| uValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleValSerHisAspThrThrT 7908 : GGTACATTTGCTTTTCCTTTCTATCCAGGGACACTTCGTTATAGTCTCGCATGACACGACTT : 7846 128 : yrAspAla{Il} >>>> Target Intron 1 >>>> {e}TyrGluAlaSerTrpTyr : 136 ||||| !{||} 70 bp {|}|||...|||!!!|||||| yrAspAsn{Il}++ ++{e}TyrSerAlaThrTrpTyr 7845 : ACGATAAT{AT}gt.........................ag{A}TACAGCGCTACATGGTAC : 7749 137 : AsnThrAsnProLysThrGlnAlaLeuTyrLeuLeuAlaLeuArgArgSerLeuThrProCy : 157 ||| !!..||||||..!||||||||||||:!!|||||||||||||||!:!||||||||| AsnGlyThrProLysValGlnAlaLeuTyrValLeuAlaLeuArgArgAsnLeuThrProPr 7748 : AACGGTACACCGAAAGTGCAAGCTTTATACGTGCTAGCTTTGAGAAGGAACTTGACTCCACC : 7686 158 : sTyrLeuThrAlaGlyGlyLeuIleArgLeuAsnMetGluSerPheSerGluVal : 175 :!!|||||||||||||||||| !||||||:!!|||!!!|||:!!|||||| oLeuIleThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGluVal 7685 : GCTGATTACTGCCGGAGGACTGATCTCCTTGAATTTGGAGACTTTCGCGGAGGTA : 7630 vulgar: gi|815925234|ref|XP_012247254.1| 85 175 . LHQN01028732.1 7969 7629 - 287 M 44 132 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 7630 7969 287 - . gene_id 1 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 7836 7969 . - . LHQN01028732.1 exonerate:protein2genome:local exon 7836 7969 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 7834 7835 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 7766 7835 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 7766 7767 . - . intron_id 0 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 7630 7765 . - . LHQN01028732.1 exonerate:protein2genome:local exon 7630 7765 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 7630 7969 287 - . alignment_id 1 ; Query gi|815925234|ref|XP_012247254.1| ; Align 7970 86 132 ; Align 7765 131 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 270 Query range: 99 -> 188 Target range: 1698 -> 1233 100 : SerPheLeuValIleGlnPheLeuHisLeuPheCysLeuThrMetGlnGlyGlnPheIleIl : 120 !!!|||!!!||| !||| !!!|||:!!|||! !|||!.!:!:||||||||||||:!:|| ThrPhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGlnGlyGlnPheValIl 1698 : ACGTTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGGACAATTTGTGAT : 1638 121 : eAsnSerSerAspGluIleTyrAspAla{Il} >>>> Target Intron 1 >>>> { : 130 ||||:!!! !||||||:!:|||||| !{||} 113 bp { eAsnAlaPheAspGluLeuTyrAspLys{Il}++ ++{ 1637 : AAACGCGTTCGACGAACTGTACGACAAG{AT}gt.........................ag{ : 1493 131 : e}TyrGluAlaSerTrpTyrAsnThrAsnProLysThrGlnAlaLeuTyrLeuLeuAlaLeu : 150 |}||||||:!!..!||||||||| !!.!|||!:!|||||||||||||||:!!||||||||| e}TyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeu 1492 : A}TACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTG : 1435 151 : ArgArgSerLeuThrProCysTyrLeuThrAlaGlyGlyLeuIleArgLeuAsnMetGluSe : 171 |||!!!!!!|||!.!||| ! |||||||||||||||:!!! ! !||||||:!:..!|| ArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSe 1434 : AGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATC : 1372 172 : rPheSerGlu >>>> Target Intron 2 >>>> ValIleLysLeuCysValSerTy : 182 ||||:!!||| 85 bp :!!|||||| !! !|||||||| rPheAlaGlu++ ++IleIleLysAlaSerValSerTy 1371 : GTTCGCAGAGgt.........................agATCATCAAAGCATCTGTTTCCTA : 1254 183 : rTyrThrValLeuArgSer : 188 ||||||||||:!!!:!!!! rTyrThrValMetGlnThr 1253 : CTACACGGTGATGCAGACC : 1234 vulgar: gi|815925234|ref|XP_012247254.1| 99 188 . LHQN01028732.1 1698 1233 - 270 M 30 90 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 44 132 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1234 1698 270 - . gene_id 2 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 1607 1698 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1607 1698 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 1605 1606 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 1494 1606 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 1494 1495 . - . intron_id 0 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 1361 1493 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1361 1493 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 1359 1360 . - . intron_id 2 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 1276 1360 . - . intron_id 2 LHQN01028732.1 exonerate:protein2genome:local splice3 1276 1277 . - . intron_id 1 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 1234 1275 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1234 1275 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1234 1698 270 - . alignment_id 2 ; Query gi|815925234|ref|XP_012247254.1| ; Align 1699 100 90 ; Align 1493 131 132 ; Align 1276 175 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 157 Query range: 130 -> 175 Target range: 4475 -> 4340 131 : TyrGluAlaSerTrpTyrAsnThrAsnProLysThrGlnAlaLeuTyrLeuLeuAlaLeuAr : 151 ||||||:!!!!!|||||||||:!!::: !||||||||||||||||||:!!||||||||||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeuAr 4475 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTACG : 4415 152 : gArgSerLeuThrProCysTyrLeuThrAlaGlyGlyLeuIleArgLeuAsnMetGluSerP : 172 |!!!||||||!.!||| !! |||||||||||||||!!!|||! !||||||:!::!!!!!| gSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLysThrP 4414 : GAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAGACCT : 4352 173 : heSerGluVal : 175 ||||||||||| heSerGluVal 4351 : TCTCAGAGGTA : 4341 vulgar: gi|815925234|ref|XP_012247254.1| 130 175 . LHQN01028732.1 4475 4340 - 157 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 4341 4475 157 - . gene_id 3 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 4341 4475 . - . LHQN01028732.1 exonerate:protein2genome:local exon 4341 4475 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 4341 4475 157 - . alignment_id 3 ; Query gi|815925234|ref|XP_012247254.1| ; Align 4476 131 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815927462|ref|XP_012248265.1| PREDICTED: odorant receptor 49a-like, partial [Bombus impatiens] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 100 -> 186 Target range: 5663 -> 5408 101 : ValLeuPheLeuLeuValProLeuIleSerProMetMetAspIleLeuLeuProLeuAsnGl : 121 !.!||||||:!!! !:!!|||!!!:!:||||||!!::!!|||||||||:!!||||||||||| AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGl 5663 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGA : 5603 122 : uThrArgProArgGlnGlnLeuLeuAsnValAsnTyrValLeuPheAspSerHisAsnTyrP : 142 ||||||| !!||| !!!!:!! !! ! !||| !!!! !!|||..! !!!!.||| uThrArgAlaArg---LeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrA 5602 : GACGCGAGCACGG---TTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATC : 5543 143 : hePheCysValTyrLeuGlnLeuSerTrpAlaAlaIleValValSerIleSerIleValThr : 162 !!:!! :!! !!!.:!!! ! !.!!.!:!!:!!:!!! ! ! !.!! !.!! rgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 5542 : GTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 5483 163 : ValAspSerLeuLeuMetLeuIleValHisHisAsnSerGlyLeuPheIleValCysGlyHi : 183 !|||:!! !! !:!!! ! !|||!!.||| !!!!||||||!!. !:!!...||| ! CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly** 5482 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTA : 5420 184 : sGlnIleGln : 186 !:!!||| *LeuValGln 5419 : ATTAGTTCAA : 5409 vulgar: gi|815927462|ref|XP_012248265.1| 100 186 . LHQN01028732.1 5663 5408 - 103 M 25 75 G 1 0 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5409 5663 103 - . gene_id 1 ; sequence gi|815927462|ref|XP_012248265.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5409 5663 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5409 5663 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5409 5663 103 - . alignment_id 1 ; Query gi|815927462|ref|XP_012248265.1| ; Align 5664 101 75 ; Align 5589 127 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 144 Query range: 98 -> 181 Target range: 5669 -> 5420 99 : CysMetSerGlyPheIleIleIleProLeuSerProValIleLeuAspIleIleSerProLe : 119 ||| :!! !|||!!: !:!:|||!!! ! !! !||||||||||||:!!! !||||| CysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLe 5669 : TGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTT : 5609 120 : uAsnGluThrArgHisArgGluGlnMetPheArgValThrTyrPheLeuAspGluAspGlnT : 140 ||||||||||||| ||| ! :!:!:!! !!.! !||||||:!!|||||||||:!!| uAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysT 5608 : GAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAAT : 5546 141 : yrPheTyrProIleTyrPheHisSerLeuTrpCysAlaPheIleIleThrMetIleAlaVal : 160 || !||| !||| |||! !! ! !.! ! !!::!!! ! :!! ! ! yrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCys 5545 : ATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGC : 5486 161 : ThrIleAspSerLeuTyrIleGlnIleValHisHisAspSerAlaLeuPheAlaIleCysGl : 181 .!! !|||:!! !|||:!: ! !|||!!.|||! !!!!!.!|||!!.||||||...|| AlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGl 5485 : GCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGG : 5423 182 : y : 181 | y 5422 : G : 5421 vulgar: gi|815916412|ref|XP_012243371.1| 98 181 . LHQN01028732.1 5669 5420 - 144 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5669 144 - . gene_id 1 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5669 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5669 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5669 144 - . alignment_id 1 ; Query gi|815916412|ref|XP_012243371.1| ; Align 5670 99 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815916412|ref|XP_012243371.1| PREDICTED: odorant receptor 9a-like [Bombus impatiens] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 102 -> 147 Target range: 1857 -> 1722 103 : PheIleIleIleProLeuSerProValIleLeuAspIleIleSerProLeuAsnGluThrAr : 123 |||:!! !:!:|||!!!:!!|||:!!|||||||||||| !:!!|||||||||:!!||||| PheLeuCysValProPheAlaProIleIleLeuAspIleCysAlaProLeuAsnLysThrAr 1857 : TTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTGCGCGCCACTGAACAAAACGAG : 1797 124 : gHisArgGluGlnMetPheArgValThrTyrPheLeuAspGluAspGlnTyrPheTyrProI : 144 | ! |||! ! :!:!:!! !!.! !|||!:::!!||| !!:||||||!:! !! gLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMetIleM 1796 : AAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATGATAA : 1734 145 : leTyrPheHis : 147 !: .!.||| etIleIleHis 1733 : TGATAATACAC : 1723 vulgar: gi|815916412|ref|XP_012243371.1| 102 147 . LHQN01028732.1 1857 1722 - 109 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1723 1857 109 - . gene_id 2 ; sequence gi|815916412|ref|XP_012243371.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 1723 1857 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1723 1857 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1723 1857 109 - . alignment_id 2 ; Query gi|815916412|ref|XP_012243371.1| ; Align 1858 103 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911908|ref|XP_012241395.1| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 206 Query range: 23 -> 154 Target range: 429 -> 822 24 : TyrValThrLysHisSerLysTrpIleLeuGlnSerIleGlyIleTrpProAlaAlaValGlyA : 45 ||| ! !:!! !:!::!||| :!!:!!|||||||||! !|||||| ! ! !..!: TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerA 430 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGA : 493 46 : spValLysLysLeuLeuProLysIleAlaIleAlaLeuSerAsnPheValLeuLeuPheAlaIl : 66 !!:!!:!!!:! !:!! !!::!||| !! !!.!:!!!!! !! !!.!:!!||||||:!!|| snLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIl 494 : ACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGAT : 556 67 : eIleProCysIleLeuHisIleIlePheGluGluLysAspThrIleMetArgLeuLysLeuSer : 87 |||||||||| ||||||:!!!!:.!.|||:!! ! ! ! !! !!:!:!!|||:!! ! eIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeu 557 : AATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTC : 619 88 : GlyLeuLeuSerPheCysCysThrSerLeuMetLysTyrTrpAlaLeuThrLeuArgLysProA : 109 |||! !|||||| !!! !!!!:!!!!:!..||| !||| !||||||::: !! GlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysT 620 : GGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAA : 685 110 : rgIleLysGlyCysIleGluGlnValCysIleAspTrpGluGlnValGluLeuHisLysAspAr : 130 !||| ! !! !:!!.!.!!.:!! ! !||||||..! !..! ::: :: hrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLy 686 : CCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaa : 748 131 : gGluIleMetLeuLysTyrGlyArgMetGlyArgAsnLeuThrIleIleCysAlaValPheMet : 151 :|||:::||||||||||||!.!!:!.!..!!||| !! !.!!|||.!!||||||:!!|||!!: sGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIle 749 : agaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATA : 811 152 : TyrThrGly : 154 :!! !||| HisGlyGly 812 : CACGGTGGT : 822 vulgar: gi|815911908|ref|XP_012241395.1| 23 154 . LHQN01028951.1 429 822 + 206 M 131 393 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 430 822 206 + . gene_id 1 ; sequence gi|815911908|ref|XP_012241395.1| ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 430 822 . + . LHQN01028951.1 exonerate:protein2genome:local exon 430 822 . + . insertions 0 ; deletions 0 LHQN01028951.1 exonerate:protein2genome:local similarity 430 822 206 + . alignment_id 1 ; Query gi|815911908|ref|XP_012241395.1| ; Align 430 24 393 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911906|ref|XP_012241394.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 212 Query range: 22 -> 161 Target range: 426 -> 834 23 : GlnTyrThrLeuGlnMetCysGlnTrpLeuLeuLysLeuIleGlyIleTrpProLeuLeuAsnA : 44 .!.|||!:!|||||| ! !!:!||| !:!!||| !||||||! !|||||| . AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpPro---------G 427 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCA---------C : 481 45 : snHisThrSerArgLeuGluGlnLeuLeuSerIleValLeuMetIleThrCysTyrSerSerIl : 65 !. !:!!|||!.!||||||::! !:!!||| !:!!|||! :!:! !||||||!!!:!!|| lnPheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIl 482 : AGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAAT : 544 66 : ePhePheIleIleLeuProSerGlyHisHisPhePhePheValGluLysAsnLeuTyrMetLys : 86 |.!.||| |||:!!|||!!!..! |||.!..!..!.! !:!! !!.!!!!|||! !||| eLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLys 545 : ACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAA : 607 87 : MetLysMetLeuGlyProValSerPheCysValPheAlaThrValLysTyrSerTyrLeuAlaA : 108 :!!|||!!:|||||| !!:!!||| !!! ||||||..!! !:!!!..|||!!! ||| !! ValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuL 608 : GTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGC : 673 109 : rgLysGlyAlaPheLeuGlnSerCysIleArgGlnLeuArgAsnAspTrpLysArgValGlnAs : 129 !::! !! ! !:!!!!. !! !:!!!.!!!.:!!..!!.!||||||!:!! !..! euArgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrAr 674 : TGCGACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgag : 736 130 : pProSerHisArgAlaIleMetLeuLysTyrAlaGlyValSerArgLysLeuIleThrValCys : 150 ... ::: :::||||||||||||||| ! !!|||||| ! ! ! ! !!||| gLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCys 737 : aaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGT : 799 151 : AlaValPheIleTyrThrGlyGlyMetSerTyr : 161 |||:!!||||||:!! !||| !:!:.!!||| AlaIlePheIleHisGlyGlyIleLeuGlyTyr 800 : GCGATTTTCATACACGGTGGTATACTTGGATAT : 834 vulgar: gi|815911906|ref|XP_012241394.1| 22 161 . LHQN01028951.1 426 834 + 212 M 18 54 G 3 0 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 427 834 212 + . gene_id 1 ; sequence gi|815911906|ref|XP_012241394.1| ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 427 834 . + . LHQN01028951.1 exonerate:protein2genome:local exon 427 834 . + . insertions 0 ; deletions 3 LHQN01028951.1 exonerate:protein2genome:local similarity 427 834 212 + . alignment_id 1 ; Query gi|815911906|ref|XP_012241394.1| ; Align 427 23 54 ; Align 481 44 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815925234|ref|XP_012247254.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01049761.1 Habropoda laboriosa contig49761, whole genome shotgun sequence Model: protein2genome:local Raw score: 246 Query range: 23 -> 130 Target range: 1 -> 516 24 : AspLeuSerPheAsnThrLysAspSerGluLysLysAlaLysGluThrTyrGluArgValArgP : 45 ||| !||| ! !!. !||| !!! !!!: ! !.!!||||||.!!|||:!!!.!!.! !!| AspAsnSerValLysGlyLysTyrPheAspHisTrpThrLysGluAlaTyrLysAsnAlaCysP 2 : GACAATAGCGTGAAGGGGAAGTATTTCGACCACTGGACGAAAGAGGCGTACAAGAACGCGTGCT : 65 46 : heSerIleGlnAlaHisGlnArgAlaIle{Me} >>>> Target Intron 1 >>>> {t : 55 |||||||||||!.!|||||||||||||||{! } 113 bp { heSerIleGlnGlyHisGlnArgAlaIle{As}++ ++{n 66 : TCTCCATTCAGGGACATCAACGTGCTATA{AA}gt.........................ag{C : 210 56 : }PheLeuGluLysIleGluSerThrHisValThrTyrLeuPheMetCysMetGlyIleValVal : 76 }|||:!!:!!:!!|||||| !! !|||! !||||||||||||! |||:!:|||:!:|||:!! }PheValLysGluIleGluArgGlyHisAspThrTyrLeuPheThrCysLeuGlyLeuValIle 211 : }TTTGTAAAGGAAATTGAACGCGGCCATGACACGTACCTTTTCACCTGCTTAGGCTTGGTGATT : 271 77 : LeuCysValSerIleThrMetAlaGln >>>> Target Intron 2 >>>> IleAlaTh : 88 |||||| !!|||||||||:!! !:!! 81 bp :!:::!|| LeuCysPheSerIleThrLeuIleLys++ ++LeuSerTh 272 : CTATGCTTCAGTATTACTCTGATCAAGgt.........................agCTGAGTAC : 388 89 : rMetGluIleCysValAspPheTyrLysPheIleSerPheLeuValIleGlnPheLeuHisLeu : 109 | !!!:.!! !:!!|||||||||!:!!:! !|||||| !:!! !|||.!.:!!|||||| rSerAspPheAspIleAspPheTyrArgTyrCysSerPheThrLeuCysGlnLeuMetHisLeu 389 : GTCGGATTTCGACATAGACTTCTACAGATACTGCAGTTTTACGTTGTGTCAACTGATGCACCTG : 451 110 : PheCysLeuThrMetGlnGlyGlnPheIleIleAsnSerSerAspGluIleTyrAspAlaIle : 130 ||| !:!!! !:!:||||||||||||:!::!::!!|||!!!|||..!|||:!!!!:|||!!: PheValIleMetLeuGlnGlyGlnPheValLeuAspSerCysAspArgIleHisGluAlaMet 452 : TTCGTCATCATGCTTCAGGGACAGTTCGTGCTGGATTCGTGCGACAGAATTCACGAGGCGATG : 516 vulgar: gi|815925234|ref|XP_012247254.1| 23 130 . LHQN01049761.1 1 516 + 246 M 31 93 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 30 90 5 0 2 I 0 77 3 0 2 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049761.1 exonerate:protein2genome:local gene 2 516 246 + . gene_id 1 ; sequence gi|815925234|ref|XP_012247254.1| ; gene_orientation + LHQN01049761.1 exonerate:protein2genome:local cds 2 96 . + . LHQN01049761.1 exonerate:protein2genome:local exon 2 96 . + . insertions 0 ; deletions 0 LHQN01049761.1 exonerate:protein2genome:local splice5 97 98 . + . intron_id 1 ; splice_site "GT" LHQN01049761.1 exonerate:protein2genome:local intron 97 209 . + . intron_id 1 LHQN01049761.1 exonerate:protein2genome:local splice3 208 209 . + . intron_id 0 ; splice_site "AG" LHQN01049761.1 exonerate:protein2genome:local cds 210 300 . + . LHQN01049761.1 exonerate:protein2genome:local exon 210 300 . + . insertions 0 ; deletions 0 LHQN01049761.1 exonerate:protein2genome:local splice5 301 302 . + . intron_id 2 ; splice_site "GT" LHQN01049761.1 exonerate:protein2genome:local intron 301 381 . + . intron_id 2 LHQN01049761.1 exonerate:protein2genome:local splice3 380 381 . + . intron_id 1 ; splice_site "AG" LHQN01049761.1 exonerate:protein2genome:local cds 382 516 . + . LHQN01049761.1 exonerate:protein2genome:local exon 382 516 . + . insertions 0 ; deletions 0 LHQN01049761.1 exonerate:protein2genome:local similarity 2 516 246 + . alignment_id 1 ; Query gi|815925234|ref|XP_012247254.1| ; Align 2 24 93 ; Align 211 56 90 ; Align 382 86 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815900272|ref|XP_012236302.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414573.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold16, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 524 Query range: 0 -> 128 Target range: 650498 -> 648657 1 : MetLysArgLeuLeuAspIleMetArgGluAspTrpGluIleTyrLysLysLeuArgA : 20 |||!:! !||||||:!!||||||!:!|||||||||..!||||||||||||:!!!:!| MetArgTyrLeuLeuAsnIleMetGlnGluAspTrpArgIleTyrLysLysValLysA 650498 : ATGAGGTATTTATTGAATATAATGCAAGAGGATTGGAGGATATATAAGAAAGTAAAGA : 650441 21 : snGluTyrAspLeuLeuCysGluGlnTyrAlaIleGlyLysLysIleThrValSerPh : 39 |||||!:!|||:!!||||||||||||||||||:!!|||||||||:!!|||..!||||| snGluPheAspValLeuCysGluGlnTyrAlaValGlyLysLysLeuThrThrSerPh 650440 : ACGAGTTTGACGTTCTTTGTGAACAATATGCAGTAGGAAAGAAGCTTACTACTAGTTT : 650384 40 : eVal{A} >>>> Target Intron 1 >>>> {la}PheLeuPheGlyLeuIle : 47 |!.!{|} 1457 bp {||}|||||||||||||||||| eAla{A}++ ++{la}PheLeuPheGlyLeuIle 650383 : TGCA{G}gt.........................ag{CT}TTTTTATTCGGATTAATA : 648903 48 : ThrProPheAlaAlaMetProLeuLeuLeuAsnAlaAlaAspAlaLeuGlyLeuCysA : 67 ||||||||||||||||||||||||||||||||||||||||||.!!||||||!!! !!| ThrProPheAlaAlaMetProLeuLeuLeuAsnAlaAlaAspThrLeuGlyPheSerA 648902 : ACACCGTTTGCGGCAATGCCATTACTGCTGAATGCAGCTGACACTTTAGGATTCAGCA : 648843 68 : snIleSerAspAspArgProLeuAlaPheArgValGluHisPheValAspValAspLy : 86 ||:!:|||..!||||||||||||!.!|||||||||||||||||||||||||||||||| snValSerSerAspArgProLeuValPheArgValGluHisPheValAspValAspLy 648842 : ATGTGTCCAGCGATCGACCGTTGGTATTTCGAGTTGAACATTTCGTGGATGTGGACAA : 648786 87 : sTyrTyrPheProLeuLeuValHisSerTyrIleGlyThrLeuAlaTyrThrThrIle : 105 |||||||!:! !!||||||||||||||||||.!!||||||:!!|||!:!|||.!!||| sTyrTyrTyrThrLeuLeuValHisSerTyrPheGlyThrIleAlaPheThrAlaIle 648785 : ATACTACTATACCCTTTTAGTGCATTCATACTTTGGTACTATAGCATTTACTGCGATT : 648729 106 : ValLeuAlaIleAsnSerIleIleAlaValTyrValLeuHisGluSerGlyLeuCysG : 125 |||:!!:!!||||||||||||||||||||||||||||||||||||!!!|||||||||| ValValSerIleAsnSerIleIleAlaValTyrValLeuHisGluCysGlyLeuCysG 648728 : GTTGTCTCTATCAACTCGATAATAGCTGTGTACGTCCTACACGAATGCGGACTTTGTG : 648669 126 : luValLeuArg : 128 ||:!!|||||| luIleLeuArg 648668 : AAATCTTAAGG : 648658 vulgar: gi|815900272|ref|XP_012236302.1| 0 128 . KQ414573.1 650498 648657 - 524 M 40 120 S 0 1 5 0 2 I 0 1453 3 0 2 S 1 2 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414573.1 exonerate:protein2genome:local gene 648658 650498 524 - . gene_id 1 ; sequence gi|815900272|ref|XP_012236302.1| ; gene_orientation + KQ414573.1 exonerate:protein2genome:local cds 650378 650498 . - . KQ414573.1 exonerate:protein2genome:local exon 650378 650498 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local splice5 650376 650377 . - . intron_id 1 ; splice_site "GT" KQ414573.1 exonerate:protein2genome:local intron 648921 650377 . - . intron_id 1 KQ414573.1 exonerate:protein2genome:local splice3 648921 648922 . - . intron_id 0 ; splice_site "AG" KQ414573.1 exonerate:protein2genome:local cds 648658 648920 . - . KQ414573.1 exonerate:protein2genome:local exon 648658 648920 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local similarity 648658 650498 524 - . alignment_id 1 ; Query gi|815900272|ref|XP_012236302.1| ; Align 650499 1 120 ; Align 648919 42 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815900272|ref|XP_012236302.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414573.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold16, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 437 Query range: 125 -> 246 Target range: 640301 -> 639745 126 : ValLeuArgPheLysLeuGluAsnPheValGluSerAspValMetAspValLysLeuH : 145 :!!!!!||| ! |||||||||||||||||||||..!|||..!!!::!!|||:!!|||| LeuPheArgValLysLeuGluAsnPheValGluAspAspThrIleAsnValGluLeuH 640301 : CTGTTTAGAGTGAAACTAGAAAATTTCGTGGAAGATGATACCATAAACGTGGAACTGC : 640244 146 : isAlaAsnLysArgAspAspLysTrpTyrGluAsnAlaArgAspCysValIleLeuHi : 164 || !||||||||| |||!:!||||||:!!||| !|||!!:||||||:!!||||| isLeuAsnLysArgIleAspArgTrpTyrGlnAsnPheArgGluCysValLeuLeuHi 640243 : ATCTCAACAAGCGCATAGACAGATGGTATCAAAATTTCAGAGAGTGTGTACTCTTGCA : 640187 165 : sLysHisIleIle{Gl} >>>> Target Intron 1 >>>> {u}PheAlaAsn : 172 |||||||||||||{||} 115 bp {|}||||||||| sLysHisIleIle{Gl}++ ++{u}PheAlaAsn 640186 : TAAGCACATAATC{GA}gt.........................ag{A}TTTGCTAAT : 640048 173 : IleLeuGluAspAlaAsnThrThrSerTyrLeuLeuGlnIleGlyPheAsnMetIleC : 192 :!!||||||!!:|||||||||||||||||||||!!!|||:!:|||||||||||||||| LeuLeuGluGluAlaAsnThrThrSerTyrLeuPheGlnLeuGlyPheAsnMetIleC 640047 : CTACTTGAGGAAGCAAATACCACGTCTTATTTGTTCCAGTTGGGGTTTAACATGATTT : 639988 193 : ysValSerPheThrGlnPheGln >>>> Target Intron 2 >>>> AlaVal : 201 ||||||||||||||||||||||| 81 bp .!!||| ysValSerPheThrGlnPheGln++ ++ThrVal 639987 : GCGTAAGCTTCACACAGTTTCAGgt.........................agACGGTA : 639880 202 : IleAsnIleGlnGluAsnAlaAlaLeuAlaPheArgTyrIleSerValThrIleSerL : 221 ||||||:!!|||!!:!.. !! ! |||.!!||||||:!!||||||||||||!!!| IleAsnLeuGlnAspThrProLys---AlaLeuArgTyrValSerValThrIleCysL 639879 : ATAAATTTACAAGATACACCCAAG---GCTCTCAGATATGTTTCAGTCACGATTTGCT : 639823 222 : euLeuCysAspLeuLeuPheValSerTrpProGlyGlnGlnLeuSerAspSerThrGl : 240 ||||||||||||||||||||||||||||||||||||||!:!|||||||||! !||||| euLeuCysAspLeuLeuPheValSerTrpProGlyGlnArgLeuSerAspTyrThrGl 639822 : TGTTATGCGACCTTTTGTTTGTAAGCTGGCCAGGACAACGATTGTCCGATTATACTGA : 639766 241 : uArgIlePheGluPheThr : 246 |||||||||||||!:!||| uArgIlePheGluTyrThr 639765 : ACGCATCTTCGAATATACG : 639746 vulgar: gi|815900272|ref|XP_012236302.1| 125 246 . KQ414573.1 640301 639745 - 437 M 43 129 S 0 2 5 0 2 I 0 111 3 0 2 S 1 1 M 30 90 5 0 2 I 0 77 3 0 2 M 10 30 G 1 0 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414573.1 exonerate:protein2genome:local gene 639746 640301 437 - . gene_id 2 ; sequence gi|815900272|ref|XP_012236302.1| ; gene_orientation + KQ414573.1 exonerate:protein2genome:local cds 640171 640301 . - . KQ414573.1 exonerate:protein2genome:local exon 640171 640301 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local splice5 640169 640170 . - . intron_id 1 ; splice_site "GT" KQ414573.1 exonerate:protein2genome:local intron 640056 640170 . - . intron_id 1 KQ414573.1 exonerate:protein2genome:local splice3 640056 640057 . - . intron_id 0 ; splice_site "aG" KQ414573.1 exonerate:protein2genome:local cds 639965 640055 . - . KQ414573.1 exonerate:protein2genome:local exon 639965 640055 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local splice5 639963 639964 . - . intron_id 2 ; splice_site "GT" KQ414573.1 exonerate:protein2genome:local intron 639884 639964 . - . intron_id 2 KQ414573.1 exonerate:protein2genome:local splice3 639884 639885 . - . intron_id 1 ; splice_site "AG" KQ414573.1 exonerate:protein2genome:local cds 639746 639883 . - . KQ414573.1 exonerate:protein2genome:local exon 639746 639883 . - . insertions 0 ; deletions 1 KQ414573.1 exonerate:protein2genome:local similarity 639746 640301 437 - . alignment_id 2 ; Query gi|815900272|ref|XP_012236302.1| ; Align 640302 126 129 ; Align 640055 170 90 ; Align 639884 200 30 ; Align 639854 211 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815900272|ref|XP_012236302.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414573.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold16, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 229 Query range: 240 -> 321 Target range: 629001 -> 628758 241 : ArgIlePheGluPheThrThrAsnGlyLysTrpTyrLeuSerSerIleAsnCysArgL : 260 :::|||::: ||| |||||||||||||||||| !|||||| !|||||||||| LysIleTyrIlePheArgThrAsnGlyLysTrpTyrGluSerSerTyrAsnCysArgL 629001 : aaaatatatattttcaggACAAATGGCAAATGGTATGAATCGTCATATAATTGCAGAA : 628944 261 : ysLeuLeuMetMetMetLeuSerLysSerIleThrProLeuLysLeuThrAlaTyrLy : 279 ||||||||!!:!!:|||||||||||||||:!!||| !!|||||||||||||||! !|| ysLeuLeuIleIleMetLeuSerLysSerLeuThrSerLeuLysLeuThrAlaCysLy 628943 : AACTTCTGATAATAATGTTATCAAAAAGCTTAACATCTCTTAAATTAACGGCTTGCAA : 628887 280 : sPheTyrThrLeuAsnLeuGluSerPheSerAlaValArgPheIlePheTyrIleAsp : 298 |.!!||||||||||||||||||||||||!:!||||||||||||...|||:::... sIleTyrThrLeuAsnLeuGluSerPheAsnAlaValArgPhePhePheHisPheTyr 628886 : AATCTACACattaaatttagaaagttTCAATGCGGTAagatttttcttccacttttat : 628830 299 : ArgSerLeuAsnArgHisGlnValIleLeuLysLeuAsnAspHisSerGlyProTyrA : 318 ||||||||| ::: |||! ...||| |||... !:!. TyrSerLeuAsnPheSerGluPheIleProCysPheAsnTyrPheSerAsnSerPheG 628829 : tactcgttaaatttctctgaatttaTCCCttgctttaattatttttcaaactcaTTTG : 628770 319 : rgIleMetIle : 321 .!:!:!!::!! luLeuIleLeu 628769 : AGTTGATATTA : 628759 vulgar: gi|815900272|ref|XP_012236302.1| 240 321 . KQ414573.1 629001 628758 - 229 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414573.1 exonerate:protein2genome:local gene 628759 629001 229 - . gene_id 3 ; sequence gi|815900272|ref|XP_012236302.1| ; gene_orientation . KQ414573.1 exonerate:protein2genome:local cds 628759 629001 . - . KQ414573.1 exonerate:protein2genome:local exon 628759 629001 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local similarity 628759 629001 229 - . alignment_id 3 ; Query gi|815900272|ref|XP_012236302.1| ; Align 629002 241 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815906995|ref|XP_012239264.1| PREDICTED: odorant receptor 2a-like [Bombus impatiens] Target: KQ414583.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold34, whole genome shotgun sequence Model: protein2genome:local Raw score: 965 Query range: 0 -> 297 Target range: 619597 -> 620811 1 : MetPheAsnArgAspAsnAspLysTyrGluHisIleThrAlaTyrTyrThrTrpGlnA : 20 :!!|||! !|||:!!|||||||||||||||!.!|||..!.!!|||||||||||||||! LeuPheIleArgAsnAsnAspLysTyrGluArgIleValThrTyrTyrThrTrpGlnG 619598 : CTGTTTATCCGCAATAACGATAAATACGAACGTATCGTAACGTATTACACTTGGCAAG : 619655 21 : laIlePheHisGlnIleThrPheGlnThrPheGlyPheIleAlaValIleSerTrpGl : 39 .!|||||||||!!.||||||!:!|||!:!||||||.!!||||||||||||! !|||.. lyIlePheHisHisIleThrTyrGlnSerPheGlyIleIleAlaValIlePheTrpSe 619656 : GAATTTTCCATCATATCACTTATCAAAGCTTCGGTATCATAGCTGTAATCTTCTGGTC : 619712 40 : ySerThrProIleLeuTyrGlnIleSerGlyThrSerLysGlnLeuProMetValGly : 58 !!!!||| !!:!!:!! !!! !!!:!.! !!|||! !:!!! ||| !!!: !!.! rCysThrAlaValValAsnLeuMetLysArgThrTyrGlnLeuLeuLeuIleLysAla 619713 : ATGCACAGCAGTTGTAAATCTGATGAAACGGACGTATCAACTTTTATTGATAAAAGCA : 619769 59 : TrpTyrProTyrAsnValThrSerThrProValPheGluPheThrSerLeuHisGlnP : 78 |||||||||||||||||||||! !:!!|||!.!!::||||||||| ||||||||| TrpTyrProTyrAsnValThrIleSerProAlaTyrGluPheThrIleLeuHisGlnV 619770 : TGGTATCCTTATAATGTAACAATTTCGCCAGCTTAtgaatttactattttacatCAAG : 619829 79 : heMetValValCysThrSerCysIleAsnAsnIleAlaIleAspThrLeuAlaThrGl : 97 !!:!!! !||| !...:::||||||||||||:!!||||||||||||!!! !||||| alValGlyValThrValAsnCysIleAsnAsnValAlaIleAspThrPheIleThrGl 619830 : TCGTGGGTGTCACTGtaaattgtattaataatGTAGCAATAGATACTTTTATAACAGG : 619886 98 : yPheIleValThrAlaCysCysGlnLeuThrIleLeuAsnTyrAsnIleSerSerMet : 116 |||||||:!!|||||||||||||||||||||:!!|||!:!|||||||||||||||!!: yPheIleIleThrAlaCysCysGlnLeuThrLeuLeuSerTyrAsnIleSerSerIle 619887 : TTTTATAATAACTGCTTGTTGCCAATTGACACTCTTAAGTTATAACATCTCTTCGATA : 619943 117 : HisCysIleIleGluLysLysTyrThrLeuLeuIleAspAsnValSerIleGluAsnS : 136 |||! ! ! ||||||:!!!:!..! ! !! !|||:!!:!!||| !!!:!!.| HisTyrGluAlaGluLysGluPheValAlaArgThrAspAspIleSerAlaAspLysS 619944 : CACTATGAAGCGGAGAAAGAATTTGTTGCTAGGACTGATGATATCAGTGCCGATAAAT : 620003 137 : erThrLeuLysValTyrSerLysMetTyrGluAspLeuLysHisCysIleGluHisTh : 155 |||||! !|||..!|||!:!:!!:!!||||||||||||||| ||||||||||||!: erThrSerLysThrTyrAsnGlnLeuTyrGluAspLeuLysIleCysIleGluHisSe 620004 : CTACTTCAAAAACTTACAACCAATTGTATgaggatttgaaaatttgcattgaaCATAG : 620060 156 : rIleMetIlePhe{As} >>>> Target Intron 1 >>>> {p}PheSerLys : 163 !! !:!!|||! !{||} 105 bp {|}|||:!!::! rArgLeuIleSer{As}++ ++{p}PheAlaArg 620061 : TAGACTGATATCC{GA}gt.........................ag{T}TTCGCACGA : 620189 164 : GlnIleGlnAspValPheGlyThrLeuIlePheLeuGlnLeuLeuValAspCysIleV : 183 :!!|||||||||..!|||||||||:!!||||||!!!||||||||||||:!!||||||. LysIleGlnAspThrPheGlyThrValIlePhePheGlnLeuLeuValAsnCysIleT 620190 : AAGATTCAAGATACATTCGGTACTGTGATATTTTTTCAACTGCTGGTAAATTGTATAA : 620249 184 : alIleCysAlaIleLeuPheAsnLeuSerGln >>>> Target Intron 2 >>> : 194 .!:!!||| !:!! !!:!|||:!!|||||| 81 bp hrValCysLeuLeuAlaTyrAsnIleSerGln++ 620250 : CCGTTTGTTTACTTGCATACAATATATCACAGgt........................ : 620284 195 : > MetLysAspTyrValThrSerGluPheLeuGlyAlaLeuLeuTyrThrCysCysV : 212 :!!||| !!|||||| !|||!!:!!.!!!||| !!!!:!!:!!! !||||||: ++LeuLysTyrTyrValLeuSerAspLeuPheGlyMetPheMetHisMetCysCysM 620285 : .agCTGAAATATTACGTTCTATCCGATTTGTTTGGTATGTTTATGCATATGTGCTGTA : 620417 213 : alIleTyrGlnIlePheIleTyrCysTrpHisGlyAsnGluLeuHisPheHis >>> : 230 !!! !|||||||||||||||||||||||||||||||||||||||:!!.!!||| etThrTyrGlnIlePheIleTyrCysTrpHisGlyAsnGluLeuTyrLeuHis++ 620418 : TGACATATCAAATCTTTATATATTGCTGGCACGGGAACGAACTGTATCTTCATgt... : 620473 231 : > Target Intron 3 >>>> SerMetArgIleCysSerSerAlaTyrAlaAsnA : 241 68 bp ||||||!.!||||||! !:!!|||||| !|||| ++SerMetAsnIleCysPheAlaAlaTyrMetAsnA 620474 : ......................agAGCATGAATATATGTTTTGCCGCTTATATGAATA : 620572 242 : snTrpTrpAspAsnSerLysAspPheLysHisAlaLeuLeuIleIleMetAlaArgAl : 260 |||||||| !!|||!!!||||||||||||!..|||||||||:!!:!!|||:!!!:!|| snTrpTrpHisAsnThrLysAspPheLysArgAlaLeuLeuValValMetSerLysAl 620573 : ATTGGTGGCATAATACCAAGGATTTTAAACGAGCCTTGCTCGTTGTAATGTCAAAAGC : 620629 261 : aGlnTrpProLeuIleLeuIleValGlyAsnValMetGluLeuSerLeuGlnAsnPhe : 279 |||| ! |||:!!||||||! !|||||||||:!!|||||||||||||||:!!|||||| aGlnArgProIleIleLeuThrValGlyAsnIleMetGluLeuSerLeuGluAsnPhe 620630 : TCAACGACCTATTATTTTAACTGTTGGAAATATTATGGAATTATCTTTAGAGAATTTC : 620686 280 : ValLeu >>>> Target Intron 4 >>>> IleLeuArgThrSerTyrSerIl : 289 |||||| 69 bp ||||||||||||||||||||||| ValLeu++ ++IleLeuArgThrSerTyrSerIl 620687 : GTTCTAgt.........................agATTCTACGTACATCGTATTCCAT : 620785 290 : ePheThrValLeuArgThrSerThr : 297 |||||||||||||!:!||||||||| ePheThrValLeuLysThrSerThr 620786 : TTTTACCGTTTTAAAAACTTCTACA : 620811 vulgar: gi|815906995|ref|XP_012239264.1| 0 297 . KQ414583.1 619597 620811 + 965 M 159 477 S 0 2 5 0 2 I 0 101 3 0 2 S 1 1 M 33 99 5 0 2 I 0 77 3 0 2 M 36 108 5 0 2 I 0 64 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414583.1 exonerate:protein2genome:local gene 619598 620811 965 + . gene_id 1 ; sequence gi|815906995|ref|XP_012239264.1| ; gene_orientation + KQ414583.1 exonerate:protein2genome:local cds 619598 620076 . + . KQ414583.1 exonerate:protein2genome:local exon 619598 620076 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local splice5 620077 620078 . + . intron_id 1 ; splice_site "gt" KQ414583.1 exonerate:protein2genome:local intron 620077 620181 . + . intron_id 1 KQ414583.1 exonerate:protein2genome:local splice3 620180 620181 . + . intron_id 0 ; splice_site "AG" KQ414583.1 exonerate:protein2genome:local cds 620182 620281 . + . KQ414583.1 exonerate:protein2genome:local exon 620182 620281 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local splice5 620282 620283 . + . intron_id 2 ; splice_site "GT" KQ414583.1 exonerate:protein2genome:local intron 620282 620362 . + . intron_id 2 KQ414583.1 exonerate:protein2genome:local splice3 620361 620362 . + . intron_id 1 ; splice_site "AG" KQ414583.1 exonerate:protein2genome:local cds 620363 620470 . + . KQ414583.1 exonerate:protein2genome:local exon 620363 620470 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local splice5 620471 620472 . + . intron_id 3 ; splice_site "GT" KQ414583.1 exonerate:protein2genome:local intron 620471 620538 . + . intron_id 3 KQ414583.1 exonerate:protein2genome:local splice3 620537 620538 . + . intron_id 2 ; splice_site "AG" KQ414583.1 exonerate:protein2genome:local cds 620539 620694 . + . KQ414583.1 exonerate:protein2genome:local exon 620539 620694 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local splice5 620695 620696 . + . intron_id 4 ; splice_site "GT" KQ414583.1 exonerate:protein2genome:local intron 620695 620763 . + . intron_id 4 KQ414583.1 exonerate:protein2genome:local splice3 620762 620763 . + . intron_id 3 ; splice_site "AG" KQ414583.1 exonerate:protein2genome:local cds 620764 620811 . + . KQ414583.1 exonerate:protein2genome:local exon 620764 620811 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local similarity 619598 620811 965 + . alignment_id 1 ; Query gi|815906995|ref|XP_012239264.1| ; Align 619598 1 477 ; Align 620183 161 99 ; Align 620363 194 108 ; Align 620539 230 156 ; Align 620764 282 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815902073|ref|XP_003486905.2| PREDICTED: odorant receptor 49b-like [Bombus impatiens] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 158 Query range: 301 -> 437 Target range: 1306931 -> 1305885 302 : LeuLeuLeuLysLeuCysGluAspIleGluAsnLeuThrAsnIleMetPheLeuIl : 320 ||||||! !!..:!! .!.|||:::...|||||| ... !!!: !!!!!:! LeuLeuTyrSerValValAsnAspValAsnAsnLeuPheThrProIleValPheVa 1306931 : CTTTTATACAGCGTGGTGAATGatgtgaataatttatttactccCATCGTTTTCGT : 1306877 321 : eGlnLeuIleThrSerThrTyrAsnIleSerLeuIleGlyPheLysIleValGluA : 339 !||||||:!!|||||| ! |||!!!|||! !|||||| !:!! !!!!:: lGlnLeuLeuThrSerGlyIleValIleCysLeuSerGlyPheAlaValPheAspA 1306876 : ACAACTTCTTACAAGCGGAATAGTAATTTGTTTAAGTGGATTCGCGGTTTTCGATA : 1306820 340 : spAsnProGlyLys<-><->ValLysPheValThrGlnLeuGlyIlePheIleIle : 355 !!:!! !! !!! :!!|||!:!|||:!! ! |||..! .!! :!: snAspAlaArgThrAspIleLeuLysTyrValSerTyrLeuSerSerIleTrpLeu 1306819 : ACGACGCCCGTACCGATATTCTGAAATACGTATCTTATTTGTCCTCGATTTGGTTG : 1306766 356 : GlnLeuPheLeuCysAsnTrpProProAspLeuLeuArgSerLysSerGluAlaIl : 374 ||||||!!.|||!! !! !||| !!!::!!||| !..!:!!||| !! !|| GlnLeuLeuLeuTrpCysLeuProGlyGluIleLeuValGlnGluSerLeuGluIl 1306765 : CAACTTTTGTTATGGTGTTTGCCCGGTGAAATTCTCGTTCAAGAGAGTTTAGAAAT : 1306709 375 : eGlyHisAlaGlyTyr<->SerMetProTrpTyrArgTyrProCysAsnLeuArgA : 392 |||||||!.!! !||| !:!:!:|||||||||!.!! ||| ! !! !!:!! eGlyHisValValTyrLeuAsnValProTrpTyrAsnLeuProProIleTyrGlnA 1306708 : AGGACACGTAGTCTACTTAAATGTACCATGGTACAATTTGCCGCCAATTTACCAGA : 1306652 393 : snProValAsnMetLeuLeuIleArgGlyGlnLysProValArgLeuThrAlaGly : 410 .. !:!! !|||:!!:!!:!!|||!.!|||:!! ! !!!!:!!|||||| ! rgLysLeuCysMetMetIleLeuArgAlaGlnGlnTyrCysSerIleThrAlaLeu 1306651 : GAAAACTTTGCATGATGATCCTTAGGGCACAACAATATTGCAGCATCACGGCATTA : 1306598 411 : LysPheIleGluLeuSerLeuGlyThrPheAlaSer >>>> Target Intron : 423 ! !||| ! !||||||:!! !|||!!..!!||| 629 bp ThrPheArgThrLeuSerIleHisThrLeuThrSer++ 1306597 : ACGTTTCGAACGTTGTCTATTCACACGTTAACGAGCgt.................. : 1306557 424 : 1 >>>> MetIleSerAlaAlaAlaSerPhePheThrMetIleArgSerMet : 437 :!:.!!!:!.!!|||||||||!:!||||||:!!:!:|||..!||| ++ValPheAsnThrAlaAlaSerTyrPheThrLeuLeuArgGlnMet 1306556 : .......agGTATTCAATACAGCCGCTTCATATTTCACTTTGCTGCGACAAATG : 1305886 vulgar: gi|815902073|ref|XP_003486905.2| 301 437 . KQ414608.1 1306931 1305885 - 158 M 42 126 G 0 6 M 36 108 G 0 3 M 43 129 5 0 2 I 0 625 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1305886 1306931 158 - . gene_id 1 ; sequence gi|815902073|ref|XP_003486905.2| ; gene_orientation + KQ414608.1 exonerate:protein2genome:local cds 1306560 1306931 . - . KQ414608.1 exonerate:protein2genome:local exon 1306560 1306931 . - . insertions 9 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1306558 1306559 . - . intron_id 1 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1305931 1306559 . - . intron_id 1 KQ414608.1 exonerate:protein2genome:local splice3 1305931 1305932 . - . intron_id 0 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1305886 1305930 . - . KQ414608.1 exonerate:protein2genome:local exon 1305886 1305930 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1305886 1306931 158 - . alignment_id 1 ; Query gi|815902073|ref|XP_003486905.2| ; Align 1306932 302 126 ; Align 1306800 344 108 ; Align 1306689 380 129 ; Align 1305931 423 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897750|ref|XP_003485761.2| PREDICTED: odorant receptor Or1-like [Bombus impatiens] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 260 -> 338 Target range: 1306958 -> 1306727 261 : TyrLysThrCysPheGlnPheTyrGlnArgLeuValCysMetThrAsnAspTyrAs : 279 |||..!||| !!!...!.!. ! !! !||| ! !!:!!..!|||||| || TyrSerThrHisLeuMetIleLeuLeuLeuLeuTyrSerValValAsnAspValAs 1306958 : TATTCGACACATTTAATGATACTGCTACTTTTATACAGCGTGGTGAATGatgtgaa : 1306904 280 : nLysLeuPheAsnLeuSerMetPheIleGlnMetLeuSerSerThrSerIleIleC : 298 |...||||||... !! !:!:|||:!!|||:!:|||!!!||| !! !:!!|||| nAsnLeuPheThrProIleValPheValGlnLeuLeuThrSerGlyIleValIleC 1306903 : taatttatttactccCATCGTTTTCGTACAACTTCTTACAAGCGGAATAGTAATTT : 1306847 299 : ysLeuSerGlyPheGlnAlaValValValGlyGlyGlnSerSerAspValMetLys : 316 |||||||||||||| |||||| !!! !..!! ! !!!!!|||:!!:!!||| ysLeuSerGlyPhe---AlaValPheAspAsnAspAlaArgThrAspIleLeuLys 1306846 : GTTTAAGTGGATTC---GCGGTTTTCGATAACGACGCCCGTACCGATATTCTGAAA : 1306796 317 : PheGlyIleTyrLeuSerAlaAlaIleSerGlnLeuLeuTyrIleCysTrpIleGl : 335 !:!! ! !|||||||||:!! ! ! !|||||||||! |||! ! !|| TyrValSerTyrLeuSerSerIleTrpLeuGlnLeuLeuLeuTrpCysLeuProGl 1306795 : TACGTATCTTATTTGTCCTCGATTTGGTTGCAACTTTTGTTATGGTGTTTGCCCGG : 1306739 336 : yAsnGluLeu : 338 |.!. ||| yGluIleLeu 1306738 : TGAAATTCTC : 1306728 vulgar: gi|815897750|ref|XP_003485761.2| 260 338 . KQ414608.1 1306958 1306727 - 115 M 42 126 G 1 0 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1306728 1306958 115 - . gene_id 1 ; sequence gi|815897750|ref|XP_003485761.2| ; gene_orientation . KQ414608.1 exonerate:protein2genome:local cds 1306728 1306958 . - . KQ414608.1 exonerate:protein2genome:local exon 1306728 1306958 . - . insertions 0 ; deletions 1 KQ414608.1 exonerate:protein2genome:local similarity 1306728 1306958 115 - . alignment_id 1 ; Query gi|815897750|ref|XP_003485761.2| ; Align 1306959 261 126 ; Align 1306833 304 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815895919|ref|XP_003485159.2| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1232 Query range: 0 -> 377 Target range: 1308191 -> 1305879 1 : MetTrpProIleGluGlnLysSerSerThrCysSerLysIlePheSerTyrIleAr : 19 :!:|||||||||!!::!!|||||||||||| !!!!!|||:!!|||:!!|||.!!|| ValTrpProIleAspGluLysSerSerThrArgThrLysLeuPheAlaTyrPheAr 1308191 : GTCTGGCCTATCGACGAGAAAAGTTCAACGCGTACCAAACTATTCGCATACTTTCG : 1308137 20 : gLeuThrPheThrLeuIleSerLeuIleSerValPheValProGluIleMetLeuI : 38 ||||! !||| !|||:!::!!|||! !|||:!!!!.|||||||||||||||:!!: gLeuIlePheGlyLeuValAlaLeuAsnSerMetLeuValProGluIleMetMetV 1308136 : GCTGATATTCGGATTAGTGGCACTCAATAGCATGTTAGTGCCAGAAATTATGATGG : 1308080 39 : leAlaValAsnTrpGlyAsnIleGluIleLeuAla{G} >>>> Target Intr : 50 !! ! !||||||||||||:!!..!|||||||||{|} 82 bp alIleSerAsnTrpGlyAsnLeuArgIleLeuAla{G}+- 1308079 : TAATATCGAATTGGGGCAACTTAAGGATCCTAGCA{G}gc................ : 1308041 51 : on 1 >>>> {ly}AlaGlySerIleValThrThrLeuGlyGlnThrLeuPheLy : 64 {||}!.!|||!!!:!!:!!|||||||||||||||:!!|||||||| ++{ly}ValGlyCysValLeuThrThrLeuGlyGlnSerLeuPheLy 1308040 : .........ag{GA}GTAGGATGCGTTTTAACAACACTCGGGCAATCGTTATTCAA : 1307920 65 : sMetPheTyrLeuIleAlaArgArgGluArgSerTyrMetLeuTyrTyrGluIleL : 83 |! !.!!||||||||| !||||||!!:!:!!!!|||! |||||||||||||||: sThrIleTyrLeuIleMetArgArgAspLysThrTyrArgLeuTyrTyrGluIleA 1307919 : AACGATTTACCTAATAATGAGAAGGGATAAAACCTACAGACTTTACTACGAAATAC : 1307863 84 : ysSerLeuTrpAspThrAlaAsnAspSerAsnGluIleGlnSerTyrIleGlnPhe : 101 ::..!|||||| !!:!!.!!:!!||| !!!!.|||! !|||!:!!:! !.!..!! rgAspLeuTrpHisSerThrAspAspProLysGluArgGlnAsnPheGluAsnLeu 1307862 : GTGATCTGTGGCATTCTACCGACGATCCCAAAGAGAGACAGAACTTCGAAAATCTC : 1307809 102 : AlaTyrTrpAlaArgIleCysThrIleValPheTyrSerSerCysValCysAsnVa : 120 |||||||||||||||! ! !||||||||||||||||||:!!|||:!!!! ||||| AlaTyrTrpAlaArgThrIleThrIleValPheTyrSerAlaCysMetTrpAsnVa 1307808 : GCTTATTGGGCAAGAACAATTACAATAGTCTTTTACTCGGCCTGCATGTGGAACGT : 1307752 121 : lIleThrPheSerSerAlaAlaAlaValAspTyrPheArgPheAspTyrAsnAlaA : 139 |.!!||||||!!!! !||||||.!! !|||||||||! !.!!!!:|||||| !! lPheThrPheThrPheAlaAlaThrHisAspTyrPheMetIleGluTyrAsnIleS 1307751 : GTTCACATTCACGTTTGCTGCGACCCACGATTATTTCATGATCGAATACAACATCA : 1307695 140 : snSerThrSerAsnSerArgHisLeuProPheIleVal{Tr} >>>> Target : 152 :!!:!.!!..!!!.|||!:!|||||||||||| !|||{||} 30 erAsnAlaGluLysSerLysHisLeuProPheGluVal{Tr}++ 1307694 : GCAACGCTGAAAAGAGCAAACACTTGCCCTTCGAAGTC{TG}gt............ : 1307652 153 : Intron 2 >>>> {p}TyrGlyThrAspIleSerAlaSerProLysPheGluIl : 165 4 bp {|}|||||||||||||||!!!||||||||| |||||||| ++{p}TyrGlyThrAspIleThrAlaSerProLeuPheGluIl 1307651 : .............ag{G}TATGGAACAGATATCACAGCATCTCCTCTCTTCGAAAT : 1307313 166 : eAlaPheIleCysGlnPheLeuSerAlaThrLeuSerIleThrSerIleAlaGlyL : 184 |||||||:!!||||||.!.:!!:!!!.!.!!!!! ! !.!!|||! !:!!|||| eAlaPheValCysGlnLeuIleAlaValAlaPheValAlaAlaSerThrSerGlyL 1307312 : CGCTTTCGTTTGTCAACTGATTGCGGTTGCATTTGTGGCCGCCTCAACCTCAGGCT : 1307256 185 : euAspCysSerPheMetThrThrMetLeuHisValSerAlaGlnPheLysLeuIle : 202 ||||| ! |||! !|||||||||!!:||||||||||||!.!||||||||||||||| euAspGlySerCysMetThrThrIleLeuHisValSerGlyGlnPheLysLeuIle 1307255 : TGGATGGATCATGTATGACCACGATTTTACACGTATCTGGACAATTCAAATTAATC : 1307202 203 : AsnThrTrpIleSerAsnIleGlyThrGluIleAsnCysAsnProAsnTyrThrGl : 221 !:!||||||:!!|||!!.!!:|||..!|||! !||| !!!.||| !|||:!!!: SerThrTrpValSerLysMetGlyValGluThrAsnValLysProValTyrSerAr 1307201 : AGTACGTGGGTCAGCAAAATGGGAGTAGAAACAAATGTCAAACCTGTTTATTCGCG : 1307145 222 : nLysIleLysValAspLeuThrArgCysIleArgHisHisGlnArgIleIle{Hi} : 239 !|||:!!:!!|||||||||! !!:!|||||||||||||||||||||!!:|||{:!} gLysLeuGluValAspLeuIleLysCysIleArgHisHisGlnArgMetIle{As} 1307144 : AAAATTAGAAGTGGACCTGATCAAATGCATTCGTCATCACCAACGAATGATA{AA} : 1307091 240 : >>>> Target Intron 3 >>>> {s}ValValAsnGluValAsnAsnLeu : 247 169 bp {!}|||||||||!::|||||||||||| ++ ++{n}ValValAsnAspValAsnAsnLeu 1307090 : gt.........................ag{C}GTGGTGAATGatgtgaataattta : 1306898 248 : LeuThrProIleValPheLeuGlnIleLeuThrSerGlyIleGluValCysLeuSe : 266 ...|||||||||||||||:!!|||:!!|||||||||||||||! !:!!|||||||| PheThrProIleValPheValGlnLeuLeuThrSerGlyIleValIleCysLeuSe 1306897 : tttactccCATCGTTTTCGTACAACTTCTTACAAGCGGAATAGTAATTTGTTTAAG : 1306841 267 : rGlyTyrAlaIleLeuAspThrGlyLysAlaGluAlaAspLeuValLysPheIleS : 285 ||||!:!|||:!!!!!||| ..! ! |||....!!|||:!!:!!|||!:!:!!| rGlyPheAlaValPheAsp---AsnAspAlaArgThrAspIleLeuLysTyrValS 1306840 : TGGATTCGCGGTTTTCGAT---AACGACGCCCGTACCGATATTCTGAAATACGTAT : 1306787 286 : erTyrPheIleSerMetAlaValHisLeuLeuLeuTrpCysTrpProGlyGluIle : 303 |||||!!. !|||!!: !:!!!!.|||||||||||||||! !|||||||||||| erTyrLeuSerSerIleTrpLeuGlnLeuLeuLeuTrpCysLeuProGlyGluIle 1306786 : CTTATTTGTCCTCGATTTGGTTGCAACTTTTGTTATGGTGTTTGCCCGGTGAAATT : 1306733 304 : LeuValGlnGluSerGlnGluIleGlyHisAlaValTyrPheAsnValProTrpTy : 322 ||||||||||||||| !||||||||||||!.!||||||!!.|||||||||||||| LeuValGlnGluSerLeuGluIleGlyHisValValTyrLeuAsnValProTrpTy 1306732 : CTCGTTCAAGAGAGTTTAGAAATAGGACACGTAGTCTACTTAAATGTACCATGGTA : 1306676 323 : rAspLeuProProIleTyrGlnArgHisLeuCysLeuMetIleValArgAlaGlnG : 341 |:!!||||||||||||||||||||| ! ||||||:!!||||||:!!|||||||||| rAsnLeuProProIleTyrGlnArgLysLeuCysMetMetIleLeuArgAlaGlnG 1306675 : CAATTTGCCGCCAATTTACCAGAGAAAACTTTGCATGATGATCCTTAGGGCACAAC : 1306619 342 : lnTyrSerSerIleSerAlaLeuThrPheGlnThrLeuSerIleHisThrLeuThr : 359 |||||!!!||||||!!!||||||||||||!:!|||||||||||||||||||||||| lnTyrCysSerIleThrAlaLeuThrPheArgThrLeuSerIleHisThrLeuThr 1306618 : AATATTGCAGCATCACGGCATTAACGTTTCGAACGTTGTCTATTCACACGTTAACG : 1306565 360 : Ala >>>> Target Intron 4 >>>> ValPheAsnThrAlaAlaSerTyr : 368 ::! 629 bp |||||||||||||||||||||||| Ser++ ++ValPheAsnThrAlaAlaSerTyr 1306564 : AGCgt.........................agGTATTCAATACAGCCGCTTCATAT : 1305909 369 : PheThrLeuLeuGlnGlnIleGlnGln : 377 ||||||||||||!:!|||!!:|||||| PheThrLeuLeuArgGlnMetGlnGln 1305908 : TTCACTTTGCTGCGACAAATGCAACAA : 1305880 vulgar: gi|815895919|ref|XP_003485159.2| 0 377 . KQ414608.1 1308191 1305879 - 1232 M 49 147 S 0 1 5 0 2 I 0 78 3 0 2 S 1 2 M 101 303 S 0 2 5 0 2 I 0 300 3 0 2 S 1 1 M 86 258 S 0 2 5 0 2 I 0 165 3 0 2 S 1 1 M 33 99 G 1 0 M 87 261 5 0 2 I 0 625 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1305880 1308191 1232 - . gene_id 1 ; sequence gi|815895919|ref|XP_003485159.2| ; gene_orientation + KQ414608.1 exonerate:protein2genome:local cds 1308044 1308191 . - . KQ414608.1 exonerate:protein2genome:local exon 1308044 1308191 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1308042 1308043 . - . intron_id 1 ; splice_site "GC" KQ414608.1 exonerate:protein2genome:local intron 1307962 1308043 . - . intron_id 1 KQ414608.1 exonerate:protein2genome:local splice3 1307962 1307963 . - . intron_id 0 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1307655 1307961 . - . KQ414608.1 exonerate:protein2genome:local exon 1307655 1307961 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1307653 1307654 . - . intron_id 2 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1307351 1307654 . - . intron_id 2 KQ414608.1 exonerate:protein2genome:local splice3 1307351 1307352 . - . intron_id 1 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1307090 1307350 . - . KQ414608.1 exonerate:protein2genome:local exon 1307090 1307350 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1307088 1307089 . - . intron_id 3 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1306921 1307089 . - . intron_id 3 KQ414608.1 exonerate:protein2genome:local splice3 1306921 1306922 . - . intron_id 2 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1306560 1306920 . - . KQ414608.1 exonerate:protein2genome:local exon 1306560 1306920 . - . insertions 0 ; deletions 1 KQ414608.1 exonerate:protein2genome:local splice5 1306558 1306559 . - . intron_id 4 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1305931 1306559 . - . intron_id 4 KQ414608.1 exonerate:protein2genome:local splice3 1305931 1305932 . - . intron_id 3 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1305880 1305930 . - . KQ414608.1 exonerate:protein2genome:local exon 1305880 1305930 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1305880 1308191 1232 - . alignment_id 1 ; Query gi|815895919|ref|XP_003485159.2| ; Align 1308192 1 147 ; Align 1307960 51 303 ; Align 1307350 153 258 ; Align 1306920 240 99 ; Align 1306821 274 261 ; Align 1305931 361 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815895210|ref|XP_012241922.1| PREDICTED: odorant receptor 13a-like isoform X2 [Bombus impatiens] Target: KQ414615.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold33, whole genome shotgun sequence Model: protein2genome:local Raw score: 551 Query range: 0 -> 167 Target range: 2576159 -> 2576794 1 : MetLeuAlaThrAspGlyLeuIleAlaThrAlaLeuLeuHisThrCysGlyHisPh : 19 !!:||||||||||||||||||||||||||||||:!!|||||||||||||||||||| IleLeuAlaThrAspGlyLeuIleAlaThrAlaValLeuHisThrCysGlyHisPh 2576160 : ATACTTGCAACTGATGGTCTAATTGCAACTGCTGTGCTCCATACATGTGGGCATTT : 2576214 20 : eAlaValLeuArgLysAsnValLysGlnLeuAspSerTyrIleTyrArg >>>> : 36 ||||||||||::::::|||::::::::!||||||! !! !||||||||| eAlaValLeuLysGluAsnLeuArgArgLeuAspLeuCysIleTyrArg++ 2576215 : TGCAGtacttaaagaaaatttaaggcgACTTGATTTATGCATTTATCGCgt..... : 2576267 37 : Target Intron 1 >>>> IleThrArgLeuLysThrAsnSerLysHisIleA : 47 67 bp :!:!.!!!!!!!:!!!.!|||||||||||||||| ++ValAsnSerPheGluAsnAsnSerLysHisIleA 2576268 : ....................agGTGAATAGTTTTGAAAACAATTCGAAACATATAA : 2576365 48 : snAlaAsnLeuTyrGluIleLysIleGlnIleIleHisValIleLysHisHisGln : 65 |||||!!.||||||:!!||||||:!!||||||! !|||:!!||||||||||||||| snAlaLysLeuTyrGlnIleLysValGlnIleThrHisLeuIleLysHisHisGln 2576366 : ACGCGAAATTATACCAGATAAAAGTTCAAATCACACACTTAATTAAACATCATCAA : 2576419 66 : ValValLeu{Tr} >>>> Target Intron 2 >>>> {p}PheCysAspAs : 73 |||||||||{||} 65 bp {|}||||||||||| ValValLeu{Tr}++ ++{p}PheCysAspAs 2576420 : GTAGTCCTt{tg}gt.........................ag{G}TTTTGTGATAA : 2576508 74 : nMetGluLysAsnPheHisLeuIleLeuPheLeuGlnAlaMetIleSerSerLeuL : 92 ||||||||||||||||||||||!!:|||.!!||||||.!!|||! !|||||||||: nMetGluLysAsnPheHisLeuMetLeuLeuLeuGlnThrMetThrSerSerLeuM 2576509 : tatggaaaagaattttcaccTAATGCTCCTTTTACAAACTATGACCAGTAGTCTTA : 2576565 93 : euIleCysPheValGlyPheGlnValSerAlaValArgIlePheThrAspLeuLys : 110 !!|||||||||||||||||||||||||||.!!|||!!!:::... ...||| etIleCysPheValGlyPheGlnValSerThrValSerValIleLeuLysPheLys 2576566 : TGATTTGTTTCGTCGGATTTCAAGTTTCGACCGTAAGCgtgattttaaaatttaaa : 2576619 111 : --IleValIleAsnHisLysGlnLeuIleIleCysTyrLeuIleHisIlePheAla : 128 ##|||::::::...:::||| ::: ||| :!!||||||:!!! !.!!:!! ##IleIleValGlnTyrLys***IleThrIleLeuHisLeuIleTyrThrLeuSer 2576620 : acattatagtacagtataaataaattacaattcttcATTTAATATATACTCTTTCA : 2576675 129 : LeuGlnThrLeuMetGluGlnSerLysMetIleLysPheAlaSerHisLeuIleVa : 147 ||| !!||||||! ||||||||||||:::|||||||||||||||||||||||||| Leu***ThrLeuThrGluGlnSerLysValIleLysPheAlaSerHisLeuIleVa 2576676 : TTATAGACACTAACAGAACAATctaaagtaattaaatttgcttcTCACTTAATCGT : 2576732 148 : lAlaPhePheGlnLeuLeuLeuPheCysPheProGlyAspMetLeuIleGlnGluV : 166 |......||||||||||||||||||||||||||||||||||||||||||!:!:!!| lThrLeuPheGlnLeuLeuLeuPheCysPheProGlyAspMetLeuIleArgGlnV 2576733 : GAcgctttttcaattattactcTTTTGTTTCCCTGGGGATATGCTAATCCGACAGG : 2576789 167 : alAsp : 167 ||:!! alAsn 2576790 : TGAAT : 2576794 vulgar: gi|815895210|ref|XP_012241922.1| 0 167 . KQ414615.1 2576159 2576794 + 551 M 35 105 5 0 2 I 0 63 3 0 2 M 33 99 S 0 2 5 0 2 I 0 61 3 0 2 S 1 1 M 41 123 F 0 2 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414615.1 exonerate:protein2genome:local gene 2576160 2576794 551 + . gene_id 1 ; sequence gi|815895210|ref|XP_012241922.1| ; gene_orientation + KQ414615.1 exonerate:protein2genome:local cds 2576160 2576264 . + . KQ414615.1 exonerate:protein2genome:local exon 2576160 2576264 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2576265 2576266 . + . intron_id 1 ; splice_site "GT" KQ414615.1 exonerate:protein2genome:local intron 2576265 2576331 . + . intron_id 1 KQ414615.1 exonerate:protein2genome:local splice3 2576330 2576331 . + . intron_id 0 ; splice_site "AG" KQ414615.1 exonerate:protein2genome:local cds 2576332 2576432 . + . KQ414615.1 exonerate:protein2genome:local exon 2576332 2576432 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2576433 2576434 . + . intron_id 2 ; splice_site "gt" KQ414615.1 exonerate:protein2genome:local intron 2576433 2576497 . + . intron_id 2 KQ414615.1 exonerate:protein2genome:local splice3 2576496 2576497 . + . intron_id 1 ; splice_site "AG" KQ414615.1 exonerate:protein2genome:local cds 2576498 2576794 . + . KQ414615.1 exonerate:protein2genome:local exon 2576498 2576794 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414615.1 exonerate:protein2genome:local similarity 2576160 2576794 551 + . alignment_id 1 ; Query gi|815895210|ref|XP_012241922.1| ; Align 2576160 1 105 ; Align 2576332 36 99 ; Align 2576499 70 123 ; Align 2576624 111 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815895212|ref|XP_012241927.1| PREDICTED: odorant receptor 13a-like isoform X3 [Bombus impatiens] Target: KQ414615.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold33, whole genome shotgun sequence Model: protein2genome:local Raw score: 411 Query range: 17 -> 164 Target range: 2576202 -> 2576794 18 : HisPheAlaValLeuArgLysAsnValLysGlnLeuAspSerTyrIleTyrArgVa : 36 ||| ! !.!:!!|||!:! ||| ..!! |||||| ! ! HisValGlyIleLeuGlnTyrLeuLysLysIle***GlyAspLeuIleTyrAlaPh 2576203 : CATGTGGGCATTTTGCAGtacttaaagaaaatttaaggcgACTTGATTTATGCATT : 2576257 37 : lCysIleValPheTyrTyrIleTyrValTyrAsnCysAsnValIleTyrPheLysI : 55 ! ! ! ! !! ! ! !:!!! !||| !!||| !||| ! !:!!! eIleAlaTyrVal***LeuTyrLeuMetCysAsnArgAsnAsnIleIleAlaGluL 2576258 : TATCGCGTATGTATAACTCTATCTTATGTGTAATCGTAATAATATTATTGCTGAAA : 2576314 56 : leIleGlnLeuLeuGlnIleThrArgLeuLysThrAsnSerLysHisIleAsnAla : 73 !|||..!!!!||| !!:!:!.!!!!!!!:!!!.!||||||||||||||||||||| ysIleSerPheLeu***ValAsnSerPheGluAsnAsnSerLysHisIleAsnAla 2576315 : AAATCTCGTTCTTATAGGTGAATAGTTTTGAAAACAATTCGAAACATATAAACGCG : 2576368 74 : AsnLeuTyrGluIleLysIleGlnIleIleHisValIleLysHisHisGlnValVa : 92 !!.||||||:!!||||||:!!||||||! !|||:!!|||||||||||||||||||| LysLeuTyrGlnIleLysValGlnIleThrHisLeuIleLysHisHisGlnValVa 2576369 : AAATTATACCAGATAAAAGTTCAAATCACACACTTAATTAAACATCATCAAGTAGT : 2576425 93 : lLeu{Tr} >>>> Target Intron 1 >>>> {p}PheCysAspAsnMetG : 100 ||||{||} 65 bp {|}|||||||||||||||| lLeu{Tr}++ ++{p}PheCysAspAsnMetG 2576426 : CCTt{tg}gt.........................ag{G}TTTTGTGATAAtatgg : 2576514 101 : luLysAsnPheHisLeuIleLeuPheLeuGlnAlaMetIleSerSerLeuLeuIle : 118 |||||||||||||||||!!:|||.!!||||||.!!|||! !|||||||||:!!||| luLysAsnPheHisLeuMetLeuLeuLeuGlnThrMetThrSerSerLeuMetIle 2576515 : aaaagaattttcaccTAATGCTCCTTTTACAAACTATGACCAGTAGTCTTATGATT : 2576568 119 : CysPheValGlyPheGlnValSerAla >>>> Target Intron 2 >>>> : 128 ||||||||||||||||||||||||.!! 86 bp CysPheValGlyPheGlnValSerThr++ ++ 2576569 : TGTTTCGTCGGATTTCAAGTTTCGACCgt.........................ag : 2576682 129 : ThrLeuMetGluGlnSerLysMetIleLysPheAlaSerHisLeuIleValAlaPh : 146 ||||||! ||||||||||||:::|||||||||||||||||||||||||||..... ThrLeuThrGluGlnSerLysValIleLysPheAlaSerHisLeuIleValThrLe 2576683 : ACACTAACAGAACAATctaaagtaattaaatttgcttcTCACTTAATCGTGAcgct : 2576738 147 : ePheGlnLeuLeuLeuPheCysPheProGlyAspMetLeuIleGlnGluValAsp : 164 .||||||||||||||||||||||||||||||||||||||||||!:!:!!|||:!! uPheGlnLeuLeuLeuPheCysPheProGlyAspMetLeuIleArgGlnValAsn 2576739 : ttttcaattattactcTTTTGTTTCCCTGGGGATATGCTAATCCGACAGGTGAAT : 2576794 vulgar: gi|815895212|ref|XP_012241927.1| 17 164 . KQ414615.1 2576202 2576794 + 411 M 76 228 S 0 2 5 0 2 I 0 61 3 0 2 S 1 1 M 33 99 5 0 2 I 0 82 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414615.1 exonerate:protein2genome:local gene 2576203 2576794 411 + . gene_id 1 ; sequence gi|815895212|ref|XP_012241927.1| ; gene_orientation + KQ414615.1 exonerate:protein2genome:local cds 2576203 2576432 . + . KQ414615.1 exonerate:protein2genome:local exon 2576203 2576432 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2576433 2576434 . + . intron_id 1 ; splice_site "gt" KQ414615.1 exonerate:protein2genome:local intron 2576433 2576497 . + . intron_id 1 KQ414615.1 exonerate:protein2genome:local splice3 2576496 2576497 . + . intron_id 0 ; splice_site "AG" KQ414615.1 exonerate:protein2genome:local cds 2576498 2576597 . + . KQ414615.1 exonerate:protein2genome:local exon 2576498 2576597 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2576598 2576599 . + . intron_id 2 ; splice_site "GT" KQ414615.1 exonerate:protein2genome:local intron 2576598 2576683 . + . intron_id 2 KQ414615.1 exonerate:protein2genome:local splice3 2576682 2576683 . + . intron_id 1 ; splice_site "AG" KQ414615.1 exonerate:protein2genome:local cds 2576684 2576794 . + . KQ414615.1 exonerate:protein2genome:local exon 2576684 2576794 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local similarity 2576203 2576794 411 + . alignment_id 1 ; Query gi|815895212|ref|XP_012241927.1| ; Align 2576203 18 228 ; Align 2576499 95 99 ; Align 2576684 128 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815895212|ref|XP_012241927.1| PREDICTED: odorant receptor 13a-like isoform X3 [Bombus impatiens] Target: KQ414615.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold33, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 0 -> 43 Target range: 2576159 -> 2576288 1 : MetLeuAlaThrAspGlyLeuIleAlaThrAlaLeuLeuHisThrCysGlyHisPh : 19 !!:||||||||||||||||||||||||||||||:!!|||||||||||||||||||| IleLeuAlaThrAspGlyLeuIleAlaThrAlaValLeuHisThrCysGlyHisPh 2576160 : ATACTTGCAACTGATGGTCTAATTGCAACTGCTGTGCTCCATACATGTGGGCATTT : 2576214 20 : eAlaValLeuArgLysAsnValLysGlnLeuAspSerTyrIleTyrArgValCysI : 38 ||||||||||::::::|||::::::::!||||||! !! !|||||||||||||||| eAlaValLeuLysGluAsnLeuArgArgLeuAspLeuCysIleTyrArgValCysI 2576215 : TGCAGtacttaaagaaaatttaaggcgACTTGATTTATGCATTTATCGCGTATGTA : 2576271 39 : leValPheTyrTyrIle : 43 ||..!.!.! !|||:!: leThrLeuSerTyrVal 2576272 : TAACTCTATCTTATGTG : 2576288 vulgar: gi|815895212|ref|XP_012241927.1| 0 43 . KQ414615.1 2576159 2576288 + 166 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414615.1 exonerate:protein2genome:local gene 2576160 2576288 166 + . gene_id 2 ; sequence gi|815895212|ref|XP_012241927.1| ; gene_orientation . KQ414615.1 exonerate:protein2genome:local cds 2576160 2576288 . + . KQ414615.1 exonerate:protein2genome:local exon 2576160 2576288 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local similarity 2576160 2576288 166 + . alignment_id 2 ; Query gi|815895212|ref|XP_012241927.1| ; Align 2576160 1 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 339 -> 390 Target range: 204772 -> 204925 340 : GlnGlySerGluIleAlaThrAlaLeuTyrAspIleGluTrpTyrAsnLeuProGlyA : 359 :!!..!..!|||:!! !..!||| !|||!!: !||||||! |||||| !..!! LysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerA 204773 : AAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGA : 204830 360 : rgLysAlaArgAspIleValLeuValLeuAlaIleSerLysTyrProLeuLysLeuTh : 378 .!||||||!:!..!:!::!!|||:!!:!!|||! :!!:!! |||||| ||||| snLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuTh 204831 : ACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAAC : 204887 379 : rAlaGlyLysIleLeuValLeuSerMetAsnThrPhe : 390 ||||||||||:::... ::!!!!||| |||||| rAlaGlyLysLeuPheProMetThrMetLeuThrPhe 204888 : CGcaggaaaattatttcctatGACGATGCTAACGTTT : 204925 vulgar: gi|815911888|ref|XP_012241385.1| 339 390 . KQ414617.1 204772 204925 + 116 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204773 204925 116 + . gene_id 1 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204773 204925 . + . KQ414617.1 exonerate:protein2genome:local exon 204773 204925 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204773 204925 116 + . alignment_id 1 ; Query gi|815911888|ref|XP_012241385.1| ; Align 204773 340 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897750|ref|XP_003485761.2| PREDICTED: odorant receptor Or1-like [Bombus impatiens] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence Model: protein2genome:local Raw score: 1278 Query range: 0 -> 412 Target range: 453891 -> 459222 1 : MetAlaGlnGluProGlyHisGluTrpMetLysProPheArgLysLeuIleAsnLeuG : 20 |||||| ! ! !||||||||||||||||||!:! !!||||||:!!||||||:!!:!!: MetAlaTyrValProGlyHisGluTrpMetArgSerPheArgGlnLeuIleHisValG 453892 : ATGGCTTATGTGCCTGGCCACGAATGGATGAGATCATTTCGACAGTTGATTCATGTAC : 453949 21 : luIleSerTyrIle{Ly} >>>> Target Intron 1 >>>> {s}TyrSerGl : 28 !!||||||||||||{||} 140 bp {|}|||||||| lnIleSerTyrIle{Ly}++ ++{s}TyrSerGl 453950 : AAATAAGTTACATA{AA}gt.........................ag{A}TACAGTGG : 454113 29 : yLeuGlyGluIleAspSerSer<->SerAlaPheLeuAsnCysAlaTyrPheValTyr : 46 |||| :::|||:::|||... |||:!!|||:!!!.. !|||||||||!.!||| yLeuTrpLysIleGluSerLysHisSerSerPheMetThrIleAlaTyrPheAlaTyr 454114 : CCTctggaaaattgaatcgaaacACTCGTCGTTTATGACAATCGCTTACTTCGCGTAC : 454170 47 : LysIleTrpMetLeuIleAlaMetTyrIlePheAlaIleThrLeuPheLeuAspIleT : 66 |||:!!|||!!:|||||| !||| !!:!!||||||:!!|||:!!||| !||||||| LysLeuTrpIleLeuIleMetMetAsnValPheAlaValThrIlePheAlaAspIleT 454171 : AAACTATGGATACTCATAATGATGAACGTATTCGCCGTCACTATATTCGCAGACATCT : 454230 67 : yrValAsnArgAspAsnLeuProIleSerThrAspAspGlyCysIlePheAlaGlyIl : 85 ||! !|||! !||||||||| !!|||! !!:!||||||||||||.!!.!!|||||||| yrGluAsnMetAspAsnLeuSerIleIleSerAspAspGlyCysPheLeuAlaGlyIl 454231 : ACGAGAACATGGACAACCTATCGATCATTAGCGACGACGGTTGTTTCCTCGCTGGAAT : 454287 86 : ePheValValIleTyrLysAlaMetAsnLeuGlnPheArgGlnLysGlyIleThrLys : 104 |.!!|||||||||!:!||||||||||||! !|||.!!!.!||||||...||| ||| eLeuValValIlePheLysAlaMetAsnTyrGlnIleHisGlnLysSerIleIleLys 454288 : ACTCGTCGTGATTTTTAAGGCTATGAATTACCAAATTCATCagaaaagtataattaaa : 454344 105 : LeuLeuAspGluThrLeuLysCysThrAspAspLeuCysGluPheSer{G} >>>> : 121 |||||||||!!:! !|||!!.|||.!!||||||||||||..!||||||{.} LeuLeuAspAspIleLeuAsnCysAlaAspAspLeuCysArgPheSer{A}++ 454345 : ttgCTCGACGACATATTGAACTGTGCTGATGATCTCTGCAGATTTTCC{A}gt..... : 454398 122 : Target Intron 2 >>>> {lu}ValGluTyrIleLysGluIleIleGluLysHi : 132 1905 bp {!.}..!||| ! !||| ! ||||||.!.::!:: ++{sn}ThrGluThrAsnLysTyrIleIleAsnArgTy 454399 : ....................ag{AT}ACCGAAACGAATAAATACATCATCAACCGATa : 456333 133 : sGlnValGlnSerLysMetIlePheTyrGlyPheThrAlaLeuGlySerIleLeuGly : 151 : :::|||::::!!||||||||||||!:! !||||||!!!:!!|||||| rTyrLysPheAsnLysValValPheTyrGlyPheSerMetLeuGlyCysValLeuGly 456334 : ctataaatttaacaaagtaGTTTTCTACGGGTTCAGCATGTTAGGATGCGTTTTAGGA : 456390 152 : ThrAlaLeuLeuPhePheSerProMetGluAspGlyLeuLeuIleArgAlaLysTyrP : 171 ! !|||||||||||||||||||||:!!:!!:!!||||||! !|||||||||||||||| IleAlaLeuLeuPhePheSerProLeuGlnAsnGlyLeuProIleArgAlaLysTyrP 456391 : ATAGCTCTGCTATTTTTCTCGCCTCTGCAGAACGGTTTGCCCATCAGAGCAAAGTATC : 456450 172 : roPheAsnThrThrIleSerProTrpHisGluIleSerLeuValIleGluThrCysAl : 190 |||||||||||||||||||||||!::!..||||||.!!|||!.!:!!||||||! !|| roPheAsnThrThrIleSerProPheArgGluIleGlyLeuAlaValGluThrPheAl 456451 : CTTTTAACACCACTATATCTCCTTTCCGAGAGATTGGTTTGGCTGTCGAAACTTTTGC : 456507 191 : aValPheGlyGlyLeuLeuGlyIleIleGlyIleAspSerPheValValMetIleCys : 209 ||||! !||||||||||||.!!|||:!!!.!!!:|||!:!.!!..!!.!|||!!:||| aValSerGlyGlyLeuLeuSerIleValAlaMetAspAsnIleThrAlaMetMetCys 456508 : TGTTTCTGGTGGTTTATTGAGCATAGTTGCCATGGACAATATCACTGCAATGATGTGC : 456564 210 : ThrLeuLeuThrValLeuPheAspMetLeuAsnValAsnPheGluAsnCysGlyIleG : 229 !:!! !:!!|||!.!! !|||||||||||||||||| !||||||!!.||| !! !: SerGlnIleThrAlaGlnPheAspMetLeuAsnValLeuPheGluLysCysThrSerG 456565 : AGCCAGATCACTGCTCAGTTCGATATGTTGAACGTACTTTTTGAGAAGTGTACTAGTC : 456624 230 : luThrLysGluHisThrValGluSer >>>> Target Intron 3 >>>> Tyr : 238 !!..!:!!.!. ! !.!|||.!. ! 813 bp lnValGluAsnLysAsnValAsnVal-+ ++Thr 456625 : AAGTGGAGAATAAAAACGTAAATGTCct.........................agacc : 457464 239 : AspGluArgIleHisAlaAsnIleArgPheAsnArgLysLysLeuAsnAsnArgPheL : 258 |||||| ... ....!.! !!.! ! !!.!|||! !! !:!!|||! !|||| AspGluIlePheLysThrGluThrAsnArgIleAsnLysThrHisAspAsnThrPheL 457465 : gatgaaattttcaagacagAAACCAATCGAATTAACAAGACGCACGACAACACGTTTC : 457524 259 : euTyrArgTyrLysThrCysPheGlnPheTyrGlnArgLeuValCysMetThrAsnAs : 277 || !|||||||||||||||.!.||||||:!!|||||||||:!!! !!!:|||!!.|| euArgArgTyrLysThrCysLeuGlnPheHisGlnArgLeuIleSerIleThrLysAs 457525 : TTCGTCGTTACAAGACCTGTCTGCAATTTCATCAGAGATTGATCTCCATAACCAAAGA : 457581 278 : pTyrAsnLysLeuPheAsnLeuSerMetPheIleGlnMetLeuSerSerThrSerIle : 296 |||||||!:!:!!!:!!:!! !|||||||||:!!||||||:!!||||||||||||||| pTyrAsnArgIleTyrSerSerSerMetPheValGlnMetIleSerSerThrSerIle 457582 : TTACAACAGAATCTACAGCTCGAGCATGTTCGTCCAGATGATCTCCAGCACTTCGATT : 457638 297 : IleCysLeuSerGlyPheGlnAlaValVal >>>> Target Intron 4 >>>> : 307 |||||||||!!!|||||||||||||||||| 67 bp IleCysLeuThrGlyPheGlnAlaValVal++ + 457639 : ATTTGCTTAACTGGTTTCCAAGCTGTCGTGgt.........................a : 457736 308 : ValGlyGlyGlnSerSerAspValMetLysPheGlyIleTyrLeuSerAlaAlaIle : 325 |||||||||||||||||||||:!!||||||||||||||||||||||||||||||||| +ValGlyGlyGlnSerSerAspIleMetLysPheGlyIleTyrLeuSerAlaAlaIle 457737 : gGTCGGAGGGCAGAGCTCGGACATCATGAAGTTCGGGATCTACTTGAGCGCGGCCATA : 457792 326 : SerGlnLeuLeuTyrIleCysTrpIleGlyAsnGluLeuAsnTyrAla >>>> Tar : 342 ||||||||||||||||||||||||:!:||||||||||||!:!|||:!! SerGlnLeuLeuTyrIleCysTrpLeuGlyAsnGluLeuSerTyrSer++ 457793 : TCTCAGCTGTTGTACATCTGTTGGCTGGGGAACGAGCTGAGCTACTCGgt........ : 457845 343 : get Intron 5 >>>> SerTrpThrLeuAspArgSerGlnTrpLeuSerGlyTrp : 354 87 bp |||! !..!:!!||||||||||||||||||||||||||| ++SerSerValIleAspArgSerGlnTrpLeuSerGlyTrp 457846 : .................agAGTTCGGTGATAGACAGGAGTCAGTGGCTCTCCGGTTGG : 457966 355 : AsnAsnGluArgLeuThrAsnIleValLysMetPheThrLeuSerThrMetPheThrA : 374 |||:!!|||!.!||||||!:!|||||||||!!:||||||||||||||||||||||||| AsnHisGluHisLeuThrSerIleValLysIlePheThrLeuSerThrMetPheThrA 457967 : AATCACGAACATTTGACTAGTATCGTGAAAATCTTCACTCTGTCCACCATGTTCACCA : 458026 375 : rgArgSerIleThrLeuLysAlaSerValPheTyrValLeuSerLeuGluThrPheIl : 393 ||!:!||||||||||||||||||.!!|||||||||||||||||||||||||||||||| rgGlnSerIleThrLeuLysAlaGlyValPheTyrValLeuSerLeuGluThrPheIl 458027 : GACAGTCGATTACGTTGAAGGCTGGCGTATTTTATGTACTATCTCTGGAGACTTTTAT : 458083 394 : eThr >>>> Target Intron 6 >>>> IleIleArgArgSerTyrSerIleT : 403 |.!! 1080 bp |||:!!|||||||||||||||:!!! eAla++ ++IleValArgArgSerTyrSerValP 458084 : CGCGgt.........................agATCGTAAGGAGGTCCTACTCAGTCT : 459193 404 : yrThrLeuLeuAsnAsnMetGlnValThr : 412 :!||||||||||||||||||!!. !||| heThrLeuLeuAsnAsnMetHisSerThr 459194 : TCACTCTATTGAACAACATGCATTCGACG : 459222 vulgar: gi|815897750|ref|XP_003485761.2| 0 412 . KQ414618.1 453891 459222 + 1278 M 24 72 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 10 30 G 0 3 M 85 255 S 0 1 5 0 2 I 0 1901 3 0 2 S 1 2 M 116 348 5 0 2 I 0 809 3 0 2 M 69 207 5 0 2 I 0 63 3 0 2 M 35 105 5 0 2 I 0 83 3 0 2 M 53 159 5 0 2 I 0 1076 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 453892 459222 1278 + . gene_id 1 ; sequence gi|815897750|ref|XP_003485761.2| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 453892 453965 . + . KQ414618.1 exonerate:protein2genome:local exon 453892 453965 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 453966 453967 . + . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 453966 454105 . + . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 454104 454105 . + . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 454106 454395 . + . KQ414618.1 exonerate:protein2genome:local exon 454106 454395 . + . insertions 3 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 454396 454397 . + . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 454396 456300 . + . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 456299 456300 . + . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 456301 456650 . + . KQ414618.1 exonerate:protein2genome:local exon 456301 456650 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 456651 456652 . + . intron_id 3 ; splice_site "CT" KQ414618.1 exonerate:protein2genome:local intron 456651 457463 . + . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 457462 457463 . + . intron_id 2 ; splice_site "Ag" KQ414618.1 exonerate:protein2genome:local cds 457464 457670 . + . KQ414618.1 exonerate:protein2genome:local exon 457464 457670 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 457671 457672 . + . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 457671 457737 . + . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 457736 457737 . + . intron_id 3 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 457738 457842 . + . KQ414618.1 exonerate:protein2genome:local exon 457738 457842 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 457843 457844 . + . intron_id 5 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 457843 457929 . + . intron_id 5 KQ414618.1 exonerate:protein2genome:local splice3 457928 457929 . + . intron_id 4 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 457930 458088 . + . KQ414618.1 exonerate:protein2genome:local exon 457930 458088 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 458089 458090 . + . intron_id 6 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 458089 459168 . + . intron_id 6 KQ414618.1 exonerate:protein2genome:local splice3 459167 459168 . + . intron_id 5 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 459169 459222 . + . KQ414618.1 exonerate:protein2genome:local exon 459169 459222 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 453892 459222 1278 + . alignment_id 1 ; Query gi|815897750|ref|XP_003485761.2| ; Align 453892 1 72 ; Align 454107 26 30 ; Align 454140 36 255 ; Align 456303 122 348 ; Align 457464 238 207 ; Align 457738 307 105 ; Align 457930 342 159 ; Align 459169 395 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815904383|ref|XP_012238122.1| PREDICTED: odorant receptor Or1-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 692 Query range: 0 -> 309 Target range: 3164271 -> 3165548 1 : MetLeuLeuArgLeuLysAlaPhePheTyrPheLeuPheSerSerSerTrpAsnTh : 19 :!:|||! !!:!|||!:! ! ! ! ! !|||!::! !! !!!!|||||||| ValLeuSerLysLeuArgLeuSerAspValSerLeuTrpPhePheArgTrpAsnTh 3164272 : gTACTTTCAAAGTTAAGATTGAGTGATGTTAGTCTCTGGTTTTTTAGATGGAACAC : 3164326 20 : rLeuGlyTyrMetThrIleLeuMetThrSerAsnPheTyrLeuPheMetGluSerL : 38 |:!!|||||| !!:!:!!|||:!:! !!!! |||!:::!!!:!:!!..!|||| rIleGlyTyrTrpSerLeuLeuLeuIleCysAlaPheTrpIleTyrValArgSerL 3164327 : GATTGGCTACTGGAGTTTACTATTAATTTGTGCGTTCTGGATATACGTGAGATCGC : 3164383 39 : euLeuThr<->TyrLysLysArgGlnLeuThrTyrArgThrTrpValProTyrAsp : 55 |||||||| !:!!..!..|||:!!|||! !!:!|||.!!|||:!!||||||||| euLeuThrAspPheSerSerArgLysLeuMetPheArgAlaTrpLeuProTyrAsp 3164384 : TTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGCATGGTTACCCTACGAT : 3164437 56 : TyrSerSerAlaSerAlaPheLeuLeuThrLeuLeuTyrGlnSerLeuPheThrTh : 74 |||||| !!||| !! !|||:!!||||||!!!:!!:!!|||:!!:!! !.!!|| TyrSerProAlaProIlePheIleLeuThrPheValHisGlnAlaIleAlaAlaTh 3164438 : TACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCGAC : 3164494 75 : rIleCysSerPheGlyCysValAlaThrAspSerLeuTyrSerGlyLeuLeuIleH : 93 |||||||!!! !..! !!|||.!!..!||||||||||||!!!||||||||||||: rIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLeuIleA 3164495 : GATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTGATTA : 3164551 94 : isIleThrCysGlnPheGluIleLeuGluHisArgLeuLysAsnIleGluSerAsn : 111 !!||| !||||||||||||||||||||||||||||||!:!|||:!!:!!!!!.!. snIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysThrGlu 3164552 : ATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAACTGAG : 3164605 112 : GlnAsnTyrSerValLysLeuCysValArgHisHisAsnGlnIleTyrLysSerLe : 130 |||:!! !!|||||||||! !|||!.!!:!||||||:!!!::||||||:!!! !:! GlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIleTyrGln***Va 3164606 : CAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTATATACCAGTAAGT : 3164662 131 : uProThrThrLeuTyrAsnPhePhe{T} >>>> Target Intron 1 >>>> : 139 ! !..! !||| ||| {!} 262 bp lPheValCysLeuValIlePheGln{L}-+ - 3164663 : TTTCGTTTGCCTTgtgatatttcaa{a}tt.........................g : 3164950 140 : {hr}ValThrPheSerTyrLeuArgAlaTyrArgPheSerGluMetValAsnGlu : 156 { !} :::.!.!!!! !|||!:!.!!! !|||||||||:!!! !||||||||| +{ys}AsnSerLeuCysCysLeuGlnThrCysArgPheSerLysLysValAsnGlu 3164951 : g{aa}aattcacTATGTTGCTTGCAAACTTGCAGATTTTCGAAAAAGGTGAACGAA : 3165002 157 : GluPheArgThrIleMetPhePheGlnPheTyrThrSerLeuCysMetIleCysPh : 175 ||||||!:! !|||:!!.!!! !||||||! !! !|||:!!! :!!|||||||| GluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIleCysPh 3165003 : GAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTT : 3165059 176 : eAsnLeuTyrGlnIleThrGlnMetGluMetAspSerAsnIleIleGlyArgIleL : 194 ||||||||||!:!!!:||||||!!::!!||||||:::......::: |||| eAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIleIleL 3165060 : CAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaatcaTAC : 3165116 195 : euPheMetAsnPheSerLeuMetGlnIlePheTyrTyrCysTrpPheGlyAsnGlu : 212 ||!:! !! !!!!:!!! !|||||||||||||||||||||!:!||||||||| euTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGlu 3165117 : TCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGGCAACGAA : 3165170 213 : ValLysLeuLysValGlnHis<->TyrAspGluGluCysAsnLysThrLeuArgLe : 230 ||||||! !||||||.!.||| :::|||:::::: ...||| :::||| ValLysHisLysValAspHisCysHisAspLysLysAsnThrLysIleIleArgGl 3165171 : GTGAAACATAAGGTTGATCATTGTcacgataagaaaaatacaaaaatcatccgaca : 3165227 231 : uAspPheLeuTyrAlaSerHisValTyr<->-----SerLeuGluLeuSerAspVa : 246 ||| !|||:!!..!!:! #####||||||:!!||| !! !!:! nIlePheSerIle***SerAsnThrPhePro#####SerLeuGlnLeuProTyrMe 3165228 : aattttctccatttGATCGAATACTTTCCCTCGTAGAGCCTCCAACTTCCATACAT : 3165283 247 : lIlePheArgSerAspTrpThrSerLeuAsnAsnAsnValLysArgAlaPheLeuM : 265 !||||||!.!||||||||||||||||||||||||||||||! ||||||.!!|||! tIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArgAlaLeuLeuI 3165284 : GATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGAGCACTTTTAA : 3165340 266 : etLeuMetArgArgAlaMetArgProIleGluPheThrSerIleTyrValIleSer : 283 !::!!||||||||||||:!!||||||||||||||||||||||||:!!|||:!!||| leMetMetArgArgAlaValArgProIleGluPheThrSerIleHisValValSer 3165341 : TCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCACGTTGTCTCT : 3165394 284 : ValAsnLeuGluSerPheMetThr >>>> Target Intron 2 >>>> Leu : 292 |||||||||||||||||||||.!! 74 bp :!! ValAsnLeuGluSerPheMetAla++ ++Val 3165395 : GTGAATCTCGAATCCTTCATGGCAgt.........................agGTA : 3165495 293 : LeuLysThrSerTyrSerValPheSerValPheGlnGlnSerGlnGluSer : 309 :!!|||||||||||||||!.!|||!:!:!!.!!|||||||||:!!:!!||| IleLysThrSerTyrSerAlaPheAsnMetIleGlnGlnSerLysGlnSer 3165496 : ATAAAAACTTCGTACTCCGCGTTCAACATGATCCAACAAAGCAAACAATCG : 3165548 vulgar: gi|815904383|ref|XP_012238122.1| 0 309 . KQ414646.1 3164271 3165548 + 692 M 40 120 G 0 3 M 98 294 S 0 1 5 0 2 I 0 258 3 0 2 S 1 2 M 80 240 G 0 3 M 20 60 G 0 3 F 0 5 M 52 156 5 0 2 I 0 70 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164272 3165548 692 + . gene_id 1 ; sequence gi|815904383|ref|XP_012238122.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3164272 3164689 . + . KQ414646.1 exonerate:protein2genome:local exon 3164272 3164689 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164690 3164691 . + . intron_id 1 ; splice_site "tt" KQ414646.1 exonerate:protein2genome:local intron 3164690 3164951 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3164950 3164951 . + . intron_id 0 ; splice_site "gg" KQ414646.1 exonerate:protein2genome:local cds 3164952 3165420 . + . KQ414646.1 exonerate:protein2genome:local exon 3164952 3165420 . + . insertions 6 ; deletions 0 ; frameshifts 5 KQ414646.1 exonerate:protein2genome:local splice5 3165421 3165422 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165421 3165494 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3165493 3165494 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165495 3165548 . + . KQ414646.1 exonerate:protein2genome:local exon 3165495 3165548 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164272 3165548 692 + . alignment_id 1 ; Query gi|815904383|ref|XP_012238122.1| ; Align 3164272 1 120 ; Align 3164395 41 294 ; Align 3164954 140 240 ; Align 3165197 220 60 ; Align 3165265 240 156 ; Align 3165495 292 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815904383|ref|XP_012238122.1| PREDICTED: odorant receptor Or1-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 653 Query range: 0 -> 292 Target range: 3157743 -> 3158895 1 : MetLeuLeuArgLeuLysAlaPhePheTyrPheLeuPheSerSerSerTrpAsnTh : 19 :!:|||! !!:!|||!:! ! ! ! ! !|||!::! !! !!!!|||||||| ValLeuSerLysLeuArgLeuSerAspValSerLeuTrpPhePheArgTrpAsnTh 3157744 : gTACTTTCAAAGTTAAGATTGAGTGATGTTAGTCTCTGGTTTTTTAGATGGAACAC : 3157798 20 : rLeuGlyTyrMetThrIleLeuMetThrSerAsnPheTyrLeuPheMetGluSerL : 38 |:!!|||||| !!:::::|||::: |||...|||!:!:!!!:!:!!..!|||| rIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrValArgSerL 3157799 : GATTGGCTACTGGAGtttactattaatttctacGTTCTTTATATACGTGAGATCGC : 3157855 39 : euLeu<->ThrTyrLysLysArgGlnLeuThrTyrArgThrTrpValProTyrAsp : 55 ||||| !!:!!..!!.|||:!!|||! !!:!|||.!!|||:!!||||||||| euLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrAsp 3157856 : TTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACGAT : 3157909 56 : TyrSerSerAlaSerAlaPheLeuLeuThrLeuLeuTyrGlnSerLeuPheThrTh : 74 |||||| !!||| !! !|||:!!||||||! !:!!:!!|||:!!:!! !:!!|| TyrSerProAlaProIlePheIleLeuThrSerValHisGlnAlaIleAlaSerTh 3157910 : TACTCCCCTGCGCCCATTTTTATCCTTACCTCCGTCCATCAAGCTATAGCCTCGAC : 3157966 75 : rIleCysSerPheGlyCysValAlaThrAspSerLeuTyrSerGlyLeuLeuIleH : 93 |||||||!!! !..! !|||.!!..!|||!!!||||||!!!||||||||||||: rIleCysCysThrSerThrValThrValAspThrLeuTyrThrGlyLeuLeuIleA 3157967 : GATATGTTGCACTTCGACCGTCACTGTGGATACTCTATACACTGGCTTGTTGATTA : 3158023 94 : isIleThrCysGlnPheGluIleLeuGluHisArgLeuLysAsnIleGluSerAsn : 111 !!||| !||||||||||||||||||||||||||||||!:!|||:!!:!!!!!.!. snIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysThrGlu 3158024 : ATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAACTGAG : 3158077 112 : GlnAsnTyrSerValLysLeuCysValArgHisHisAsnGlnIleTyrLysSerLe : 130 |||:!! !!|||||||||! !|||!.!!:!||||||:!!!::||||||:!!! !:! GlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIleTyrGln***Va 3158078 : CAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTATATACCAGTAAGT : 3158134 131 : uProThrThrLeuTyrAsnPhePhe{T} >>>> Target Intron 1 >>>> : 139 ! !..! !||| ||| {!} 262 bp lPheValCysLeuAlaIlePheGln{L}-+ - 3158135 : TTTCGTTTGCCTTgcgatatttcaa{a}tt.........................g : 3158422 140 : {hr}ValThrPheSerTyrLeuArgAlaTyrArgPheSerGluMetValAsnGlu : 156 { !} :::.!.!!!! !|||!:!.!!! !|||||||||:!!! !||||||||| +{ys}AsnSerLeuCysCysLeuGlnThrCysArgPheSerLysLysValAsnGlu 3158423 : g{aa}aattcacTATGTTGCTTGCAAACTTGCAGATTTTCGAAAAAGGTGAACGAA : 3158474 157 : GluPheArgThrIleMetPhePheGlnPheTyrThrSerLeuCysMetIleCysPh : 175 ||||||!:! !|||:!!.!!! !||||||! !! !|||:!!! :!!|||||||| GluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIleCysPh 3158475 : GAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTT : 3158531 176 : eAsnLeuTyrGlnIleThrGlnMetGluMetAspSerAsnIleIleGlyArgIleL : 194 ||||||||||!:!!!:||||||!!::!!||||||:::......::: |||| eAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIleIleL 3158532 : CAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaatcaTAC : 3158588 195 : euPheMetAsnPheSerLeuMetGlnIlePheTyrTyrCysTrpPheGlyAsnGlu : 212 ||!:! !! !!!!:!!! !|||||||||||||||||||||!:!||||||||| euTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGlu 3158589 : TCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGTTGGTACGGCAACGAA : 3158642 213 : ValLysLeuLysValGlnHis<->TyrAspGluGluCysAsnLysThrLeuArgLe : 230 |||||| !||||||.!.||| :::|||:::::: ...||| ||| ValLysAspLysValAspHisCysHisAspLysLysAsnThrLysIleThrArgGl 3158643 : GTGAAAGATAAGGTTGATCATTGTcacgataagaaaaatacaaaaatcacccgaca : 3158699 231 : uAspPheLeuTyrAlaSerHisValTyr<->-----SerLeuGluLeuSerAspVa : 246 ||| !|||:!!..!!:! #####||||||:!!||| !! !!:! nIlePheSerIle***SerAsnThrPhePro#####SerLeuGlnLeuProTyrMe 3158700 : aattttctccatttGATCGAATACTTTCCCTCGTAGAGCCTCCAACTTCCATACAT : 3158755 247 : lIlePheArgSerAspTrpThrSerLeuAsnAsnAsnValLysArgAlaPheLeuM : 265 !||||||!.!||||||||||||||||||||||||||||||! ||||||.!!|||! tIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArgAlaLeuLeuI 3158756 : GATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGAGCACTTTTAA : 3158812 266 : etLeuMetArgArgAlaMetArgProIleGluPheThrSerIleTyrValIleSer : 283 !::!!||||||||||||:!!||||||||||||||||||||||||:!!|||:!!||| leMetMetArgArgAlaValArgProIleGluPheThrSerIleHisValValSer 3158813 : TCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCACGTTGTCTCT : 3158866 284 : ValAsnLeuGluSerPheMetThrLeu : 292 |||||||||||||||||||||.!!:!! ValAsnLeuGluSerPheMetAlaVal 3158867 : GTGAATCTCGAATCCTTCATGGCAGTC : 3158895 vulgar: gi|815904383|ref|XP_012238122.1| 0 292 . KQ414646.1 3157743 3158895 + 653 M 39 117 G 0 3 M 99 297 S 0 1 5 0 2 I 0 258 3 0 2 S 1 2 M 80 240 G 0 3 M 20 60 G 0 3 F 0 5 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157744 3158895 653 + . gene_id 2 ; sequence gi|815904383|ref|XP_012238122.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3157744 3158161 . + . KQ414646.1 exonerate:protein2genome:local exon 3157744 3158161 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158162 3158163 . + . intron_id 1 ; splice_site "tt" KQ414646.1 exonerate:protein2genome:local intron 3158162 3158423 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3158422 3158423 . + . intron_id 0 ; splice_site "gg" KQ414646.1 exonerate:protein2genome:local cds 3158424 3158895 . + . KQ414646.1 exonerate:protein2genome:local exon 3158424 3158895 . + . insertions 6 ; deletions 0 ; frameshifts 5 KQ414646.1 exonerate:protein2genome:local similarity 3157744 3158895 653 + . alignment_id 2 ; Query gi|815904383|ref|XP_012238122.1| ; Align 3157744 1 117 ; Align 3157864 40 297 ; Align 3158426 140 240 ; Align 3158669 220 60 ; Align 3158737 240 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815904383|ref|XP_012238122.1| PREDICTED: odorant receptor Or1-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 395 Query range: 21 -> 307 Target range: 3155418 -> 3156422 22 : TyrMetThrIleLeuMetThrSerAsnPheTyrLeuPheMetGluSerLeuLeuTh : 40 ||| !! !:!::!! :!!!!! .!. !|||! !.!.! :!!||||||! TyrAlaIleLeuValGluSerThrValMetThrLeuSerPheGlyAlaLeuLeuLy 3155419 : TACGCGATTCTGGTCGAATCGACGGTGATGACTTTGTCTTTCGGTGCACTGTTGAA : 3155473 41 : rTyrLysLysArgGlnLeuThrTyrArgThrTrpValProTyrAspTyrSerSerA : 59 ! :!!..!|||! ||| !!||||||! !|||:!!|||! !:!!|||!!! !! sProGluSerArgProLeuProTyrArgIleTrpLeuProCysAsnTyrThrProL 3155474 : ACCAGAATCACGTCCTTTACCGTATCGAATTTGGCTACCTTGCAATTACACCCCGT : 3155530 60 : laSerAlaPheLeuLeuThrLeuLeuTyrGlnSerLeuPheThrThrIleCysSer : 77 !! !.!!!:!! !! !! !! ! ! !|||!!!:!! !.!!:!! !!:!! euIleThrTyrCysSerIleTyrThrLeuGlnCysValAlaLeuAlaLeuSerAla 3155531 : TAATTACTTACTGTTCGATTTACACTCTCCAATGTGTGGCACTCGCTCTAAGCGCT : 3155584 78 : PheGlyCysValAlaThrAspSerLeuTyrSerGlyLeuLeuIleHisIleThrCy : 96 .!. ! !|||||| !||||||||| !!!!|||||||||:!!|||! ! ! ! MetMetHisValAlaCysAspSerLeuIleCysGlyLeuLeuLeuHisThrTyrGl 3155585 : ATGATGCACGTCGCCTGCGACAGTTTGATCTGCGGCCTGCTGTTACACACTTACGG : 3155641 97 : sGlnPheGluIleLeuGluHisArgLeuLysAsnIleGluSerAsnGlnAsnTyrS : 115 !|||.!!|||||||||! !|||||||||...|||:::...|||:::::: ! ! yGlnIleGluIleLeuGlyCysArgLeuLysThrIleLysGluAsnGluSerLysT 3155642 : CCAGATCGAGATCCTCGGTTGTCGTCTGAaaacgataaaagaaaacgagagtAAGA : 3155698 116 : erValLysLeuCysValArgHisHisAsnGlnIleTyrLysSerLeuProThrThr : 133 !! !|||||||||||||||:!!:!!|||! ||||||::!!!!:!! ! !!:! hrSerLysLeuCysValArgTyrAsnAsnLeuIleTyrArgCysValVal***Ser 3155699 : CGTCCAAGTTGTGCGTTCGTTACAACAACCTTATCTATCGGTGCGTAGTGTGAAGC : 3155752 134 : LeuTyrAsnPhePheThrValThrPhe<->SerTyrLeuArg<->AlaTyrArgPh : 150 :!! ! !! |||:!! ::::::|||..! !! !||||| ValGlnVal***GlyThrLeuGlnVal***AsnPheLeuHisAspAsnCysArgPh 3155753 : GTTCAAGTTTGAGGAACTTTGcaagtgtgaaattttctgcACGATAATTGCAGATT : 3155809 151 : eSerGluMetValAsnGluGluPheArgThrIleMetPhePheGlnPheTyrThrS : 169 |!!!! |||:!!||||||:!!|||..!! ! !!:||| !|||||| ..!| eThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAlaValS 3155810 : CACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGTGA : 3155866 170 : erLeuCysMetIleCysPheAsnLeuTyrGlnIleThrGlnMetGluMetAspSer : 187 || ! !||||||||||||||||||! !:!!||| ! !!::!! !! erThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValThrPro 3155867 : GTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGACGCCG : 3155920 188 : <->AsnIleIleGlyArgIleLeuPheMetAsnPheSerLeuMetGlnIlePheTy : 205 !.. !:!:! !! !|||:!!!:!! !:!! !! !|||! !||||||||| IleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIlePheIl 3155921 : ATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCAT : 3155977 206 : rTyrCysTrpPheGlyAsnGluValLysLeuLysValGlnHisTyrAspGlu---- : 223 !|||||||||!:!||||||||||||||||||||||||...:!!!:! .!.#### eTyrCysTrpTyrGlyAsnGluValLysLeuLysValSerTyrPheArgHis#### 3155978 : TTACTGCTGGTACGGGAACGAAGTTAAGCTGAAGGTTTCTTATTTTCGACATTGTT : 3156032 224 : GluCysAsnLysThrLeuArgLeuAspPheLeuTyrAlaSerHisValTyrSerLe : 241 .!. ! ! !!! !|||!.! ! !!. ! !..!! !! !|||!! ||||| HisIleCys***IleLeuHisAsnLeuLeuThrLeuCysTyrLeuVal***SerLe 3156033 : CATATTTGCTAAATCCTGCATAATTTGTTAACACTTTGTTATCTTGTTTAGAGCCT : 3156089 242 : uGluLeuSerAspValIlePheArgSerAspTrpThrSerLeuAsnAsnAsnValL : 260 ||||:!!|||:!!:!!||||||!.! !||||||||| !!!!!:!!!!. !..!| uGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAlaThrL 3156090 : CGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGCTACAA : 3156146 261 : ysArgAlaPheLeuMetLeuMetArgArgAlaMetArgProIleGluPheThrSer : 278 ||||| !.!.|||! :!!|||! !|||||| ! !|||||||||.!!! !||| ysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleIleSer 3156147 : AACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCATCAGC : 3156200 279 : IleTyrValIleSerValAsnLeuGluSerPheMetThr >>>> Target Int : 292 :!! !|||:!!||||||||||||!!:||||||:!:.!! 133 b ValArgValLeuSerValAsnLeuAspSerPheValAla++ 3156201 : GTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt............... : 3156244 293 : ron 1 >>>> LeuLeuLysThrSerTyrSerValPheSerValPheGlnGlnSe : 306 p |||||||||||||||||||||!.!!:!!:!|||.!!|||!::.! ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGlnArgGl 3156245 : ..........agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAACGCGG : 3156417 307 : rGln : 307 !:!! yGlu 3156418 : CGAA : 3156422 vulgar: gi|815904383|ref|XP_012238122.1| 21 307 . KQ414646.1 3155418 3156422 + 395 M 121 363 G 0 3 M 4 12 G 0 3 M 41 123 G 0 3 M 35 105 F 0 4 M 69 207 5 0 2 I 0 129 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155419 3156422 395 + . gene_id 3 ; sequence gi|815904383|ref|XP_012238122.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3155419 3156241 . + . KQ414646.1 exonerate:protein2genome:local exon 3155419 3156241 . + . insertions 9 ; deletions 0 ; frameshifts 4 KQ414646.1 exonerate:protein2genome:local splice5 3156242 3156243 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156242 3156374 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3156373 3156374 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156375 3156422 . + . KQ414646.1 exonerate:protein2genome:local exon 3156375 3156422 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155419 3156422 395 + . alignment_id 3 ; Query gi|815904383|ref|XP_012238122.1| ; Align 3155419 22 363 ; Align 3155785 143 12 ; Align 3155800 147 123 ; Align 3155926 188 105 ; Align 3156035 223 207 ; Align 3156375 292 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815904383|ref|XP_012238122.1| PREDICTED: odorant receptor Or1-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 253 Query range: 147 -> 300 Target range: 3160720 -> 3161184 148 : TyrArgPheSerGluMetValAsnGluGluPheArgThrIleMetPhePheGlnPh : 166 !:!||||||:!!|||!!::!!|||! !:!!|||!!!! !! ||| ! ||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3160721 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3160775 167 : eTyrThrSerLeuCysMetIleCysPheAsnLeuTyrGlnIleThrGlnMetGluM : 185 | ..!!!! ! ! !!:||||||||||||!:!!:!:!:||||||! :!!: eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3160776 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3160832 186 : etAspSerAsnIleIleGlyArgIleLeuPheMetAsnPheSerLeuMetGlnIle : 203 !! !!|||.!.:!!:!!!.! !|||! !|||||| ! ! !!!! |||||| alTyrSerGlnValLeuAlaLeuIleProPheMetValSerValPheAlaGlnIle 3160833 : TGTATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATA : 3160886 204 : PheTyrTyrCysTrpPheGlyAsnGluValLysLeuLysValGlnHisTyrAspGl : 222 ||||||! !||||||!:!|||||||||..!|||:!!||||||!:: !! .!. PheTyrCysCysTrpTyrGlyAsnGluThrLysValLysValArgAsp---GlnTh 3160887 : TTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGGTACGTGAT---CAAAC : 3160940 223 : uGluCysAsnLysThrLeuArgLeuAspPheLeuTyrAlaSerHisValTyrSerL : 241 !!!:! ! :::::: |||...||||||!:! ! !!:!!||| !!|||! rAspPheLeuPheSerIlePheLeuSerPheLeuPheLeuArgAsnValAspSerA 3160941 : AGACTTCttattctcaattttcctctcgtttctgTTTCTACGTAATGTTGATTCTC : 3160997 242 : euGlu<->LeuSer-----AspValIlePheArgSerAspTrpThrSerLeuAsnA : 257 !..! |||!.!#####|||..!:!!|||..!|||:!!||||||:!!|||!:!. rgArgAlaLeuLys#####AspThrValPheGluSerAsnTrpThrAlaLeuSerG 3160998 : GTAGAGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCC : 3161053 258 : snAsnValLysArgAlaPheLeuMetLeuMetArgArgAlaMetArgProIleGlu : 275 !.!:!..!|||!:!.!!.!!|||! !:!!||| !|||:!!:!!!:!||||||||| lnSerThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGlu 3161054 : AGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAA : 3161107 276 : PheThrSerIleTyrValIleSerValAsnLeuGluSerPheMetThrLeuLeuLy : 294 ||||||.!! !!:!|||.!! !!||||||||||||||||||! !:!:!!! ! PheThrGlyAlaPheValPheProValAsnLeuGluSerPheLysSerValCysIl 3161108 : TTCACCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAAAGTGTTTGTat : 3161164 295 : sThrSerTyrSerValPhe : 300 ||| ||| eLysIleTyrIlePhePhe 3161165 : caaaatatatatatttttc : 3161184 vulgar: gi|815904383|ref|XP_012238122.1| 147 300 . KQ414646.1 3160720 3161184 + 253 M 72 216 G 1 0 M 22 66 G 0 3 M 2 6 F 0 5 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160721 3161184 253 + . gene_id 4 ; sequence gi|815904383|ref|XP_012238122.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160721 3161184 . + . KQ414646.1 exonerate:protein2genome:local exon 3160721 3161184 . + . insertions 3 ; deletions 1 ; frameshifts 5 KQ414646.1 exonerate:protein2genome:local similarity 3160721 3161184 253 + . alignment_id 4 ; Query gi|815904383|ref|XP_012238122.1| ; Align 3160721 148 216 ; Align 3160937 221 66 ; Align 3161006 243 6 ; Align 3161017 245 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815904383|ref|XP_012238122.1| PREDICTED: odorant receptor Or1-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 253 Query range: 147 -> 300 Target range: 3174931 -> 3175395 148 : TyrArgPheSerGluMetValAsnGluGluPheArgThrIleMetPhePheGlnPh : 166 !:!||||||:!!|||!!::!!|||! !:!!|||!!!! !! ||| ! ||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3174932 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3174986 167 : eTyrThrSerLeuCysMetIleCysPheAsnLeuTyrGlnIleThrGlnMetGluM : 185 | ..!!!! ! ! !!:||||||||||||!:!!:!:!:||||||! :!!: eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3174987 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3175043 186 : etAspSerAsnIleIleGlyArgIleLeuPheMetAsnPheSerLeuMetGlnIle : 203 !! !!|||.!.:!!:!!!.! !|||! !|||||| ! ! !!!! |||||| alTyrSerGlnValLeuAlaLeuIleProPheMetValSerValPheAlaGlnIle 3175044 : TGTATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATA : 3175097 204 : PheTyrTyrCysTrpPheGlyAsnGluValLysLeuLysValGlnHisTyrAspGl : 222 ||||||! !||||||!:!|||||||||..!|||:!!||||||!:: !! .!. PheTyrCysCysTrpTyrGlyAsnGluThrLysValLysValArgAsp---GlnTh 3175098 : TTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGGTACGTGAT---CAAAC : 3175151 223 : uGluCysAsnLysThrLeuArgLeuAspPheLeuTyrAlaSerHisValTyrSerL : 241 !!!:! ! :::::: |||...||||||!:! ! !!:!!||| !!|||! rAspPheLeuPheSerIlePheLeuSerPheLeuPheLeuArgAsnValAspSerA 3175152 : AGACTTCttattctcaattttcctctcgtttctgTTTCTACGTAATGTTGATTCTC : 3175208 242 : euGlu<->LeuSer-----AspValIlePheArgSerAspTrpThrSerLeuAsnA : 257 !..! |||!.!#####|||..!:!!|||..!|||:!!||||||:!!|||!:!. rgArgAlaLeuLys#####AspThrValPheGluSerAsnTrpThrAlaLeuSerG 3175209 : GTAGAGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCC : 3175264 258 : snAsnValLysArgAlaPheLeuMetLeuMetArgArgAlaMetArgProIleGlu : 275 !.!:!..!|||!:!.!!.!!|||! !:!!||| !|||:!!:!!!:!||||||||| lnSerThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGlu 3175265 : AGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAA : 3175318 276 : PheThrSerIleTyrValIleSerValAsnLeuGluSerPheMetThrLeuLeuLy : 294 ||||||.!! !!:!|||.!! !!||||||||||||||||||! !:!:!!! ! PheThrGlyAlaPheValPheProValAsnLeuGluSerPheLysSerValCysIl 3175319 : TTCACCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAAAGTGTTTGTat : 3175375 295 : sThrSerTyrSerValPhe : 300 ||| ||| eLysIleTyrIlePhePhe 3175376 : caaaatatatatatttttc : 3175395 vulgar: gi|815904383|ref|XP_012238122.1| 147 300 . KQ414646.1 3174931 3175395 + 253 M 72 216 G 1 0 M 22 66 G 0 3 M 2 6 F 0 5 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174932 3175395 253 + . gene_id 5 ; sequence gi|815904383|ref|XP_012238122.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174932 3175395 . + . KQ414646.1 exonerate:protein2genome:local exon 3174932 3175395 . + . insertions 3 ; deletions 1 ; frameshifts 5 KQ414646.1 exonerate:protein2genome:local similarity 3174932 3175395 253 + . alignment_id 5 ; Query gi|815904383|ref|XP_012238122.1| ; Align 3174932 148 216 ; Align 3175148 221 66 ; Align 3175217 243 6 ; Align 3175228 245 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815904383|ref|XP_012238122.1| PREDICTED: odorant receptor Or1-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 219 Query range: 33 -> 128 Target range: 3160110 -> 3160398 34 : PheMetGluSerLeuLeuThrTyrLysLysArgGlnLeuThrTyrArgThrTrpVa : 52 .!.:!!..!:!!:!! !.!!!:!!:!! |||:!!||| !! !|||..!|||:! MetLeuSerAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrpLe 3160111 : ATGTTGTCGGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGGTT : 3160165 53 : lProTyrAspTyr<->SerSerAlaSerAlaPheLeuLeuThrLeuLeuTyrGlnS : 70 !|||!:!|||||| :!!!!! !.!! !||| !||||||! ! !||||||! uProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGlnP 3160166 : ACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAGT : 3160222 71 : erLeuPheThrThrIleCysSerPheGlyCysValAlaThrAspSerLeuTyrSer : 88 !:!! ! !! !.!! !!!! !!.! !:!!!.!||||||!:!|||!:!||| heValThrLeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheSer 3160223 : TTGTAACTCTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCAGC : 3160276 89 : GlyLeuLeuIleHisIleThrCysGlnPheGluIleLeuGluHisArgLeuLysAs : 107 |||||||||||||||||| !||||||||||||||||||:!!||||||||||||!: GlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysSe 3160277 : GGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGAG : 3160333 108 : nIleGluSerAsnGlnAsnTyrSerValLysLeuCysValArgHisHisAsnGlnI : 126 !|||:!! !!:!!::!.!.||||||!.!|||! !|||!.! !|||||| !!!::| rIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrArgI 3160334 : CATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGCA : 3160390 127 : leTyrLys : 128 |||||||| leTyrLys 3160391 : TATACAAG : 3160398 vulgar: gi|815904383|ref|XP_012238122.1| 33 128 . KQ414646.1 3160110 3160398 + 219 M 23 69 G 0 3 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160111 3160398 219 + . gene_id 6 ; sequence gi|815904383|ref|XP_012238122.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160111 3160398 . + . KQ414646.1 exonerate:protein2genome:local exon 3160111 3160398 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160111 3160398 219 + . alignment_id 6 ; Query gi|815904383|ref|XP_012238122.1| ; Align 3160111 34 69 ; Align 3160183 57 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815904383|ref|XP_012238122.1| PREDICTED: odorant receptor Or1-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 191 Query range: 17 -> 128 Target range: 3180053 -> 3180389 18 : AsnThrLeuGlyTyrMetThrIleLeuMetThrSerAsnPheTyrLeuPheMetGl : 36 |||.!!:!! !!|||! ! !:!!:!! !! !||| ! !! !.!!:!:.! AsnAlaValArgTyrThrMetValValGluMetSerValAlaSerThrIleLeuAs 3180054 : AACGCTGTCAGATACACAATGGTAGTCGAGATGTCGGTCGCCTCGACTATTTTAAA : 3180108 37 : uSerLeuLeuThr<->TyrLysLysArgGlnLeuThrTyrArgThrTrpValProT : 54 .||||||:!!||| !:!:!! ! !!::!|||||||||||| !||| !!|||| nSerLeuValThrAsnPheGlnHisGlyArgLeuThrTyrArgGlyTrpPheProT 3180109 : CTCGTTAGTGACCAACTTTCAACACGGCAGACTAACCTACAGAGGCTGGTTCCCTT : 3180165 55 : yrAspTyrSerSerAlaSerAlaPheLeuLeuThrLeuLeuTyrGlnSerLeuPhe : 72 ||||||||!!!!!!||| ! !|||! !||||||! ! ! ||| !|||! ! yrAspTyrThrThrAlaValLeuPheProLeuThrTyrAlaLeuGlnLeuLeuCys 3180166 : ACGATTACACGACCGCCGTACTTTTTCCATTGACATACGCTCTGCAGCTATTATGC : 3180219 73 : ThrThrIleCysSerPheGlyCysValAlaThrAspSerLeuTyrSerGlyLeuLe : 91 ..! !:!!! !|||!:: ! !|||:!!..!|||! !|||!:!! !|||||||| ValLeuValTyrSerTrpIleHisValSerValAspIleLeuPhePheGlyLeuLe 3180220 : GTGCTCGTATATTCCTGGATCCACGTTTCAGTGGATATTCTCTTCTTCGGACTGTT : 3180276 92 : uIleHisIleThrCysGlnPheGluIleLeuGluHisArgLeuLysAsnIleGluS : 110 |!!:!!.:!: !|||||||||!!:|||||| |||...!..!:!||| !| uMetGlnLeuCysCysGlnPheAspIleLeuPheSerArgPheSerSerIleThrS 3180277 : GATGCAACTGTGCTGTCAATTCGAcattctcttctctcgtttcAGTAGCATAACGT : 3180333 111 : erAsnGlnAsnTyrSerValLysLeuCysValArgHisHisAsnGlnIleTyrLys : 128 ||.!..!.!!. ! !:!!::! !|||:!!|||||||||:!!::!||||||::! erGluAsnLysGlyValLeuArgArgCysIleArgHisHisAspArgIleTyrArg 3180334 : CGGAGAACAAGGGTGTTTTACGAAGATGCATTCGTCATCACGACAGAATTTACCGG : 3180387 vulgar: gi|815904383|ref|XP_012238122.1| 17 128 . KQ414646.1 3180053 3180389 + 191 M 23 69 G 0 3 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180054 3180389 191 + . gene_id 7 ; sequence gi|815904383|ref|XP_012238122.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180054 3180389 . + . KQ414646.1 exonerate:protein2genome:local exon 3180054 3180389 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180054 3180389 191 + . alignment_id 7 ; Query gi|815904383|ref|XP_012238122.1| ; Align 3180054 18 69 ; Align 3180126 41 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815904383|ref|XP_012238122.1| PREDICTED: odorant receptor Or1-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 188 Query range: 33 -> 128 Target range: 3174320 -> 3174609 34 : PheMetGluSerLeuLeuThrTyrLysLysArgGlnLeuThrTyrArgThrTrpVa : 52 ||| !..!! !!!! !.!!!:!|||! |||:!!||| !! !||| !|||:! PheSerSerIlePheThrAlaPheLysIleArgGluLeuProLeuArgGlyTrpLe 3174321 : TTCTCGTCGATCTTCACGGCTTTTAAGATCAGAGAGTTACCCCTTCGAGGATGGTT : 3174375 53 : l-ProTyrAspTyr<->SerSerAlaSerAlaPheLeuLeuThrLeuLeuTyrGln : 69 !#|||!:!|||||| :!!!!! !.!! !||| !||||||! ! !|||||| u#ProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGln 3174376 : AACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAG : 3174430 70 : SerLeuPheThrThrIleCysSerPheGlyCysValAlaThrAspSerLeuTyrSe : 88 ! !:!! ! !! !.!! !!!!! !!.! !:!!!.!:!!|||!:!|||!:!|| PheValThrLeuIlePheLeuThrSerAlaIleIleGlySerAspAsnLeuPheSe 3174431 : TTTGTAACTCTGATATTCCTTACTTCTGCTATTATCGGTTCTGACAATCTATTCAG : 3174487 89 : rGlyLeuLeuIleHisIleThrCysGlnPheGluIleLeuGluHisArgLeuLysA : 107 ||||||||||||||||||| !||||||||||||||||||:!!||||||||||||! rGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysS 3174488 : CGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGA : 3174544 108 : snIleGluSerAsnGlnAsnTyrSerValLysLeuCysValArgHisHisAsnGln : 125 :!|||:!! !!:!!::!.!.||||||!.!|||! !|||!.! !|||||| !!!:: erIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrArg 3174545 : GCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGC : 3174598 126 : IleTyrLys : 128 ||||||||| IleTyrLys 3174599 : ATATACAAG : 3174609 vulgar: gi|815904383|ref|XP_012238122.1| 33 128 . KQ414646.1 3174320 3174609 + 188 M 19 57 F 0 1 M 4 12 G 0 3 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174321 3174609 188 + . gene_id 8 ; sequence gi|815904383|ref|XP_012238122.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174321 3174609 . + . KQ414646.1 exonerate:protein2genome:local exon 3174321 3174609 . + . insertions 3 ; deletions 0 ; frameshifts 1 KQ414646.1 exonerate:protein2genome:local similarity 3174321 3174609 188 + . alignment_id 8 ; Query gi|815904383|ref|XP_012238122.1| ; Align 3174321 34 57 ; Align 3174379 53 12 ; Align 3174394 57 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815904383|ref|XP_012238122.1| PREDICTED: odorant receptor Or1-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 163 Query range: 18 -> 131 Target range: 3150041 -> 3150383 19 : ThrLeuGlyTyrMetThrIleLeuMetThrSerAsnPheTyrLeuPheMetGluSe : 37 |||:!! !|||! !! !:!::!! !!!! !.!!! !:!!.!!:!:...|| ThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCysMetIleLeuSerSe 3150042 : ACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTGTATGATCCTCTCTTC : 3150096 38 : rLeuLeu<->ThrTyrLysLysArgGlnLeuThrTyrArgThrTrpValProTyrA : 55 ||||||| !!:!!!.:!!|||:!!|||.!!||||||.!!|||:!!|||!:!| rLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgAlaTrpLeuProPheA 3150097 : GTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAGCCTGGCTGCCCTTCG : 3150153 56 : spTyrSerSerAlaSerAlaPheLeuLeuThrLeuLeuTyrGlnSerLeuPheThr : 73 |||||||| ! !!!!! !!:!! !:!!.!!! !:!!:!!|||! !:!! ! spTyrSerLeuProThrTyrTyrTyrIleAlaTyrValHisGlnIleValAlaLeu 3150154 : ATTACTCTCTGCCAACTTACTATTACATCGCGTACGTTCATCAGATCGTCGCGCTG : 3150207 74 : ThrIleCysSerPheGlyCysValAlaThrAspSerLeuTyrSerGlyLeuLeuIl : 92 ! ! ! |||.!!..! !|||||| !||| !:!! !!!!|||||||||:! IleGlyThrSerLeuSerAsnValAlaCysAspValIleIleCysGlyLeuLeuVa 3150208 : ATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCATCTGCGGGTTGCTCGT : 3150264 93 : eHisIleThrCysGlnPheGluIleLeuGluHisArgLeuLysAsnIleGluSerA : 111 !||| ! ! !!||| |||||||||:!!||||||:!!|||.!.!!: !..!. lHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMetLysGluMetThrGlnG 3150265 : TCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATGAAGGAGATGACGCAGG : 3150321 112 : snGlnAsnTyrSerValLysLeuCysValArgHisHisAsnGlnIleTyrLysSer : 129 !.|||!.. !:!:!! ! ! !|||||| !|||:!! ! :!!||| !! ! luGlnArgProAsnIleGlyLysIleValArgPheHisAspTyrLeuTyrGlyLeu 3150322 : AACAGAGGCCGAATATCGGGAAAATCGTTCGTTTCCACGATTATCTTTACGGGTTA : 3150375 130 : LeuPro : 131 :!!||| ValPro 3150376 : GTCCCT : 3150383 vulgar: gi|815904383|ref|XP_012238122.1| 18 131 . KQ414646.1 3150041 3150383 + 163 M 21 63 G 0 3 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150042 3150383 163 + . gene_id 9 ; sequence gi|815904383|ref|XP_012238122.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150042 3150383 . + . KQ414646.1 exonerate:protein2genome:local exon 3150042 3150383 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150042 3150383 163 + . alignment_id 9 ; Query gi|815904383|ref|XP_012238122.1| ; Align 3150042 19 63 ; Align 3150108 40 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815904383|ref|XP_012238122.1| PREDICTED: odorant receptor Or1-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 239 -> 308 Target range: 3153710 -> 3154101 240 : SerLeuGluLeuSerAspValIlePheArgSerAspTrpThrSerLeuAsnAsnAs : 258 |||||||||:!! !||| !:!! !.!|||:!! ||| !! !:!!.!.!: SerLeuGluIleValAspArgValThrAsnSerAsnIleThrValSerAspGluSe 3153711 : AGTCTCGAAATTGTGGACAGAGTAACGAACAGTAATATAACCGTGTCGGACGAAAG : 3153765 259 : nValLysArgAlaPheLeuMetLeuMetArgArgAlaMetArgProIleGluPheT : 277 ! !|||!:! !.!.:!!:!!:!!!!:|||||||||:!!..!|||:!!||||||| rSerLysLysIleLeuValLeuMetIleArgArgAlaLeuGluProValGluPheT 3153766 : CTCCAAGAAGATTCTGGTATTGATGATACGACGAGCTTTGGAGCCTGTCGAGTTCA : 3153822 278 : hrSerIleTyrValIleSerValAsnLeuGluSerPheMetThr >>>> Targe : 292 ||.!!:!! !:!!!!:|||||||||||||||||||||! !:!! hrGlyLeuArgIleMetSerValAsnLeuGluSerPheThrSer++ 3153823 : CCGGCCTTCGTATCATGTCTGTTAATCTCGAGTCATTCACGTCGgt.......... : 3153869 293 : t Intron 1 >>>> LeuLeuLysThrSerTyrSerValPheSerValPheGln : 304 184 bp |||||||||:!!||||||:!!!.!|||!:!:!!.!!||| ++LeuLeuLysSerSerTyrAlaAlaPheAsnMetLeuGln 3153870 : ...............agCTGTTGAAATCCTCCTACGCGGCTTTCAATATGCTCCag : 3154087 305 : GlnSerGlnGlu : 308 ::: :::||| GluArgArgGlu 3154088 : gaaagaagggaa : 3154101 vulgar: gi|815904383|ref|XP_012238122.1| 239 308 . KQ414646.1 3153710 3154101 + 140 M 52 156 5 0 2 I 0 180 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153711 3154101 140 + . gene_id 10 ; sequence gi|815904383|ref|XP_012238122.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3153711 3153866 . + . KQ414646.1 exonerate:protein2genome:local exon 3153711 3153866 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3153867 3153868 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3153867 3154050 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3154049 3154050 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3154051 3154101 . + . KQ414646.1 exonerate:protein2genome:local exon 3154051 3154101 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153711 3154101 140 + . alignment_id 10 ; Query gi|815904383|ref|XP_012238122.1| ; Align 3153711 240 156 ; Align 3154051 292 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815904383|ref|XP_012238122.1| PREDICTED: odorant receptor Or1-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 149 -> 219 Target range: 3180463 -> 3180676 150 : PheSerGluMetValAsnGluGluPheArgThrIleMetPhePheGlnPheTyrTh : 168 !!.:!!|||!!::!!|||!!:....!.!:! !! |||||| !||||||!:! LeuAlaGluIleMetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePheGl 3180464 : TTAGCTGAAATAATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTTCGG : 3180518 169 : rSerLeuCysMetIleCysPheAsnLeuTyrGlnIleThrGlnMetGlu<->MetA : 186 !|||!!! :!!||||||.!.!:!||| !|||:!: !.!. !!: :!:. ySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleLeuS 3180519 : AAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTCTCA : 3180575 187 : spSerAsnIleIleGlyArgIleLeuPheMetAsnPheSerLeuMetGlnIlePhe : 204 .!!!!.!..!!:!!!.!! !|||...::::::::: !|||:!!|||! !||| erThrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPhe 3180576 : GCACCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGCTTT : 3180629 205 : TyrTyrCysTrpPheGlyAsnGluValLysLeuLysValGlnHis : 219 !|||||||||!:!||||||||||||!:! !||||||!:::!! LeuTyrCysTrpTyrGlyAsnGluValArgThrLysValArgTyr 3180630 : CTTTACTGTTGGTACGGAAACGAAGTGAGAACGAAGGTTCGCTAT : 3180676 vulgar: gi|815904383|ref|XP_012238122.1| 149 219 . KQ414646.1 3180463 3180676 + 134 M 35 105 G 0 3 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180464 3180676 134 + . gene_id 11 ; sequence gi|815904383|ref|XP_012238122.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180464 3180676 . + . KQ414646.1 exonerate:protein2genome:local exon 3180464 3180676 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180464 3180676 134 + . alignment_id 11 ; Query gi|815904383|ref|XP_012238122.1| ; Align 3180464 150 105 ; Align 3180572 185 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815904383|ref|XP_012238122.1| PREDICTED: odorant receptor Or1-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 149 -> 212 Target range: 3153456 -> 3153645 150 : PheSerGluMetValAsnGluGluPheArgThrIleMetPhePheGlnPheTyrTh : 168 !!.:!!:!!!!:|||||||||:!!.!! !!!.!:!! ! !.!.|||||| ! LeuAlaGlnIleValAsnGluLysLeuGlyAsnValSerSerIleGlnPheAlaIl 3153457 : TTGGCGCAAATAGTGAACGAGAAGCTTGGAAATGTCTCGAGTATACAGTTCGCGAT : 3153511 169 : rSerLeuCysMetIleCysPheAsnLeuTyrGlnIleThrGlnMetGluMetAspS : 187 !||| ! ! !||||||||||||||||||!:!!!::!! !!!:|||:!:! ! eSerThrGlyAlaIleCysPheAsnLeuTyrArgMetSerValIleGluLeuGlyP 3153512 : AAGCACAGGAGCGATATGCTTCAATCTCTATCGAATGTCGGTGATAGAACTCGGTC : 3153568 188 : erAsnIleIleGlyArgIleLeuPheMetAsnPheSerLeuMetGlnIlePheTyr : 205 !!!!..!!:!:! ! !:!! !.!!! ! !! !||| !|||||||||||| roLysPheValGluAlaLeuThrIleThrValCysLeuLeuAlaGlnIlePheTyr 3153569 : CAAAGTTTGTGGAAGCGTTAACTATCACAGTATGCTTACTCGCGCAGATATTTTAC : 3153622 206 : TyrCysTrpPheGlyAsnGlu : 212 |||||||||!::||||||::: TyrCysTrpTyrGlyAsnAsp 3153623 : TATTGTTGGTAcggtaacgat : 3153645 vulgar: gi|815904383|ref|XP_012238122.1| 149 212 . KQ414646.1 3153456 3153645 + 130 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153457 3153645 130 + . gene_id 12 ; sequence gi|815904383|ref|XP_012238122.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153457 3153645 . + . KQ414646.1 exonerate:protein2genome:local exon 3153457 3153645 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153457 3153645 130 + . alignment_id 12 ; Query gi|815904383|ref|XP_012238122.1| ; Align 3153457 150 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815904383|ref|XP_012238122.1| PREDICTED: odorant receptor Or1-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 148 -> 217 Target range: 3178384 -> 3178594 149 : ArgPheSerGluMetValAsnGluGluPheArgThrIleMetPhePheGlnPheTy : 167 ||||||!!!:!!! !|||||| ! !|||!:! !!!:!!:|||.!.||||||! ArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLeuGlnPheSe 3178385 : agaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCTGCAATTTTC : 3178439 168 : rThrSerLeuCysMetIleCysPheAsnLeuTyrGlnIleThrGlnMetGlu<->M : 185 !! !|||! ! :!!:!:|||!!.!:!:!!|||:!!!!::!! !!!:.!. . rIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrIleAsnProP 3178440 : CATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGATTAATCCAT : 3178496 186 : etAspSerAsnIleIleGlyArgIleLeuPheMetAsnPheSerLeuMetGlnIle : 203 !...!! !|||.!!:!! !! !! !! !!:!:!: !! !! !|||! !|||:!: heSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeuThrGlnVal 3178497 : TTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACGCAGGTG : 3178550 204 : PheTyrTyrCysTrpPheGlyAsnGluValLysLeuLysVal : 217 !:!! ||||||||||||||||||||||||! !||||||||| TyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLysVal 3178551 : TATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAGGTT : 3178594 vulgar: gi|815904383|ref|XP_012238122.1| 148 217 . KQ414646.1 3178384 3178594 + 127 M 36 108 G 0 3 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178385 3178594 127 + . gene_id 13 ; sequence gi|815904383|ref|XP_012238122.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178385 3178594 . + . KQ414646.1 exonerate:protein2genome:local exon 3178385 3178594 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178385 3178594 127 + . alignment_id 13 ; Query gi|815904383|ref|XP_012238122.1| ; Align 3178385 149 108 ; Align 3178496 185 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815904383|ref|XP_012238122.1| PREDICTED: odorant receptor Or1-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 148 -> 217 Target range: 3150601 -> 3150811 149 : ArgPheSerGluMetValAsnGluGluPheArgThrIleMetPhePheGlnPheTy : 167 |||!:! ! ! !:!!.!.|||:!!|||||| !|||!!: ! ! |||.!!! ArgTyrValPheThrMetGlnGluLysPheArgTrpIleIleGlyValGlnLeuLe 3150602 : AGGTACGTTTTCACGATGCAAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTT : 3150656 168 : rThrSerLeuCysMetIleCysPheAsnLeuTyrGlnIleThrGlnMet<->GluM : 185 :!!||| ! :!::!:||||||! !||||||:!!:!:.!!.!.! ! !! uSerSerThrLeuValValCysPheIleLeuTyrGluLeuAlaAsnThrProProI 3150657 : ATCGAGCACGCTGGTAGTGTGTTTCATCCTGTACGAATTGGCGAACACGCCTCCAA : 3150713 186 : etAspSerAsnIleIleGlyArgIleLeuPheMetAsnPheSerLeuMetGlnIle : 203 !:..!|||!!. !:!: ! !:!!|||!:!:!! !! !! !:!!! !|||||| leSerSerLysTyrLeuGlnPheValLeuTyrLeuAlaCysMetMetThrGlnIle 3150714 : TCAGCTCCAAGTACCTGCAATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATC : 3150767 204 : PheTyrTyrCysTrpPheGlyAsnGluValLysLeuLysVal : 217 |||!:!|||||||||!:!|||.!.:!!:!!|||||||||||| PhePheTyrCysTrpTyrGlyGluGlnLeuLysLeuLysVal 3150768 : TTCTTTTACTGCTGGTACGGCGAGCAGTTGAAACTGAAGGTA : 3150811 vulgar: gi|815904383|ref|XP_012238122.1| 148 217 . KQ414646.1 3150601 3150811 + 121 M 35 105 G 0 3 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150602 3150811 121 + . gene_id 14 ; sequence gi|815904383|ref|XP_012238122.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150602 3150811 . + . KQ414646.1 exonerate:protein2genome:local exon 3150602 3150811 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150602 3150811 121 + . alignment_id 14 ; Query gi|815904383|ref|XP_012238122.1| ; Align 3150602 149 105 ; Align 3150710 184 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815906995|ref|XP_012239264.1| PREDICTED: odorant receptor 2a-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 164 -> 226 Target range: 3150616 -> 3150799 165 : IleGlnAspValPheGlyThrLeuIlePheLeuGlnLeuLeuValAspCysIleVa : 183 !!:|||!!: !||| !! !:!!||| !:!!||||||||| !..! :!:|| MetGlnGluLysPheArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuVa 3150617 : ATGCAAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGGT : 3150671 184 : lIleCysAlaIleLeuPheAsnLeuSerGlnMetLysAspTyrValThrSerGluP : 202 |:!:||| !||||||!:!.!.|||:!!.!.! ! :!!!:!|||:!!! lValCysPheIleLeuTyrGluLeuAlaAsnThrProPro---IleSerSerLysT 3150672 : AGTGTGTTTCATCCTGTACGAATTGGCGAACACGCCTCCA---ATCAGCTCCAAGT : 3150725 203 : heLeuGlyAlaLeuLeuTyrThrCysCysValIleTyrGlnIlePheIleTyrCys : 220 :!||| ! !:!!|||||| !..!|||:!!!!: |||||||||.!!|||||| yrLeuGlnPheValLeuTyrLeuAlaCysMetMetThrGlnIlePhePheTyrCys 3150726 : ACCTGCAATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATCTTCTTTTACTGC : 3150779 221 : TrpHisGlyAsnGluLeu : 226 |||:!!|||.!.:!!||| TrpTyrGlyGluGlnLeu 3150780 : TGGTACGGCGAGCAGTTG : 3150799 vulgar: gi|815906995|ref|XP_012239264.1| 164 226 . KQ414646.1 3150616 3150799 + 121 M 32 96 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150617 3150799 121 + . gene_id 1 ; sequence gi|815906995|ref|XP_012239264.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150617 3150799 . + . KQ414646.1 exonerate:protein2genome:local exon 3150617 3150799 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3150617 3150799 121 + . alignment_id 1 ; Query gi|815906995|ref|XP_012239264.1| ; Align 3150617 165 96 ; Align 3150713 198 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815906995|ref|XP_012239264.1| PREDICTED: odorant receptor 2a-like [Bombus impatiens] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 160 -> 226 Target range: 3155808 -> 3156003 161 : PheSerLysGlnIleGlnAspValPheGlyThrLeuIlePheLeuGlnLeuLeuVa : 179 |||!!! ..!|||.!.!!: !|||! !! ! !|||||| !|||!!! !|| PheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAlaVa 3155809 : TTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGT : 3155863 180 : lAspCysIleValIleCysAlaIleLeuPheAsnLeuSerGlnMetLysAspTyrV : 198 |..! :!:!.!|||||| !! !|||!:! |||!!! ! ..!||| . lSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGly---SerAspValT 3155864 : GAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGA---TCAGATGTGA : 3155917 199 : alThrSerGluPheLeuGlyAlaLeuLeuTyrThrCysCysValIleTyrGlnIle : 216 .! !!! !..!!:!:!!! ! !:!!:!!|||!:! !!|||:!!:!! |||||| hrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIle 3155918 : CGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATA : 3155971 217 : PheIleTyrCysTrpHisGlyAsnGluLeu : 226 |||||||||||||||:!!|||||||||:!! PheIleTyrCysTrpTyrGlyAsnGluVal 3155972 : TTCATTTACTGCTGGTACGGGAACGAAGTT : 3156003 vulgar: gi|815906995|ref|XP_012239264.1| 160 226 . KQ414646.1 3155808 3156003 + 117 M 33 99 G 1 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155809 3156003 117 + . gene_id 2 ; sequence gi|815906995|ref|XP_012239264.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155809 3156003 . + . KQ414646.1 exonerate:protein2genome:local exon 3155809 3156003 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3155809 3156003 117 + . alignment_id 2 ; Query gi|815906995|ref|XP_012239264.1| ; Align 3155809 161 99 ; Align 3155908 195 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815904383|ref|XP_012238122.1| PREDICTED: odorant receptor Or1-like [Bombus impatiens] Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 695 Query range: 0 -> 309 Target range: 1946960 -> 1945683 1 : MetLeuLeuArgLeuLysAlaPhePheTyrPheLeuPheSerSerSerTrpAsnTh : 19 :!:|||! !!:!|||!:! ! ! ! ! !|||!::! !! !!!!|||||||| ValLeuSerLysLeuArgLeuSerAspValSerLeuTrpPhePheArgTrpAsnTh 1946960 : gTACTTTCAAAGTTAAGATTGAGTGATGTTAGTCTCTGGTTTTTTAGATGGAACAC : 1946906 20 : rLeuGlyTyrMetThrIleLeuMetThrSerAsnPheTyrLeuPheMetGluSerL : 38 |:!!|||||| !!:::::|||::: |||...|||!:!:!!!:!:!!..!|||| rIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrValArgSerL 1946905 : GATTGGCTACTGGAGtttactattaatttctacGTTCTTTATATACGTGAGATCGC : 1946849 39 : euLeu<->ThrTyrLysLysArgGlnLeuThrTyrArgThrTrpValProTyrAsp : 55 ||||| !!:!!..!!.|||:!!|||! !!:!|||.!!|||:!!||||||||| euLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrAsp 1946848 : TTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACGAT : 1946795 56 : TyrSerSerAlaSerAlaPheLeuLeuThrLeuLeuTyrGlnSerLeuPheThrTh : 74 |||||| !!||| !! !|||:!!||||||!!!:!!:!!|||:!!:!! !.!!|| TyrSerProAlaProIlePheIleLeuThrPheValHisGlnAlaIleAlaAlaTh 1946794 : TACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCGAC : 1946738 75 : rIleCysSerPheGlyCysValAlaThrAspSerLeuTyrSerGlyLeuLeuIleH : 93 |||||||!!! !..! !!|||.!!..!||||||||||||!!!||||||||||||: rIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLeuIleA 1946737 : GATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTGATTA : 1946681 94 : isIleThrCysGlnPheGluIleLeuGluHisArgLeuLysAsnIleGluSerAsn : 111 !!||| !||||||||||||||||||||||||||||||!:!|||:!!:!!!!!.!. snIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysThrGlu 1946680 : ATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAACTGAG : 1946627 112 : GlnAsnTyrSerValLysLeuCysValArgHisHisAsnGlnIleTyrLysSerLe : 130 |||:!! !!|||||||||! !|||!.!!:!||||||:!!!::||||||:!!! !:! GlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIleTyrGln***Va 1946626 : CAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTATATACCAGTAAGT : 1946570 131 : uProThrThrLeuTyrAsnPhePhe{T} >>>> Target Intron 1 >>>> : 139 ! !..! !||| ||| {!} 262 bp lPheValCysLeuValIlePheGln{L}-+ - 1946569 : TTTCGTTTGCCTTgtgatatttcaa{a}tt.........................g : 1946282 140 : {hr}ValThrPheSerTyrLeuArgAlaTyrArgPheSerGluMetValAsnGlu : 156 { !} :::.!.!!!! !|||!:!.!!! !|||||||||:!!! !||||||||| +{ys}AsnSerLeuCysCysLeuGlnThrCysArgPheSerLysLysValAsnGlu 1946281 : g{aa}aattcacTATGTTGCTTGCAAACTTGCAGATTTTCGAAAAAGGTGAACGAA : 1946230 157 : GluPheArgThrIleMetPhePheGlnPheTyrThrSerLeuCysMetIleCysPh : 175 ||||||!:! !|||:!!.!!! !||||||! !! !|||:!!! :!!|||||||| GluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIleCysPh 1946229 : GAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTT : 1946173 176 : eAsnLeuTyrGlnIleThrGlnMetGluMetAspSerAsnIleIleGlyArgIleL : 194 ||||||||||!:!!!:||||||!!::!!||||||:::......::: |||| eAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIleIleL 1946172 : CAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaatcaTAC : 1946116 195 : euPheMetAsnPheSerLeuMetGlnIlePheTyrTyrCysTrpPheGlyAsnGlu : 212 ||!:! !! !!!!:!!! !|||||||||||||||||||||!:!||||||||| euTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGlu 1946115 : TCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGGCAACGAA : 1946062 213 : ValLysLeuLysValGlnHis<->TyrAspGluGluCysAsnLysThrLeuArgLe : 230 |||||| !||||||.!.||| :::|||:::::: ...||| :::||| ValLysAspLysValAspHisCysHisAspLysLysAsnThrLysIleIleArgGl 1946061 : GTGAAAGATAAGGTTGATCATTGTcacgataagaaaaatacaaaaatcatccgaca : 1946005 231 : uAspPheLeuTyrAlaSerHisValTyr<->-----SerLeuGluLeuSerAspVa : 246 ||| !|||:!!..!!:! #####||||||:!!||| !! !!:! nIlePheSerIle***SerAsnThrPhePro#####SerLeuGlnLeuProTyrMe 1946004 : aattttctccatttGATCGAATACTTTCCCTCGTAGAGCCTCCAACTTCCATACAT : 1945949 247 : lIlePheArgSerAspTrpThrSerLeuAsnAsnAsnValLysArgAlaPheLeuM : 265 !||||||!.!||||||||||||||||||||||||||||||! ||||||.!!|||! tIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArgAlaLeuLeuI 1945948 : GATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGAGCACTTTTAA : 1945892 266 : etLeuMetArgArgAlaMetArgProIleGluPheThrSerIleTyrValIleSer : 283 !::!!||||||||||||:!!||||||||||||||||||||||||:!!|||:!!||| leMetMetArgArgAlaValArgProIleGluPheThrSerIleHisValValSer 1945891 : TCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCACGTTGTCTCT : 1945838 284 : ValAsnLeuGluSerPheMetThr >>>> Target Intron 2 >>>> Leu : 292 |||||||||||||||||||||.!! 74 bp :!! ValAsnLeuGluSerPheMetAla++ ++Val 1945837 : GTGAATCTCGAATCCTTCATGGCAgt.........................agGTA : 1945737 293 : LeuLysThrSerTyrSerValPheSerValPheGlnGlnSerGlnGluSer : 309 :!!|||||||||||||||!.!|||!:!:!!.!!|||||||||:!!:!!||| IleLysThrSerTyrSerAlaPheAsnMetIleGlnGlnSerLysGlnSer 1945736 : ATAAAAACTTCGTACTCCGCGTTCAACATGATCCAACAAAGCAAACAATCG : 1945684 vulgar: gi|815904383|ref|XP_012238122.1| 0 309 . KQ414661.1 1946960 1945683 - 695 M 39 117 G 0 3 M 99 297 S 0 1 5 0 2 I 0 258 3 0 2 S 1 2 M 80 240 G 0 3 M 20 60 G 0 3 F 0 5 M 52 156 5 0 2 I 0 70 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945684 1946960 695 - . gene_id 1 ; sequence gi|815904383|ref|XP_012238122.1| ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1946543 1946960 . - . KQ414661.1 exonerate:protein2genome:local exon 1946543 1946960 . - . insertions 3 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946541 1946542 . - . intron_id 1 ; splice_site "tt" KQ414661.1 exonerate:protein2genome:local intron 1946281 1946542 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1946281 1946282 . - . intron_id 0 ; splice_site "gg" KQ414661.1 exonerate:protein2genome:local cds 1945812 1946280 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1946280 . - . insertions 6 ; deletions 0 ; frameshifts 5 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945684 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945684 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945684 1946960 695 - . alignment_id 1 ; Query gi|815904383|ref|XP_012238122.1| ; Align 1946961 1 117 ; Align 1946841 40 297 ; Align 1946279 140 240 ; Align 1946036 220 60 ; Align 1945968 240 156 ; Align 1945738 292 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815904383|ref|XP_012238122.1| PREDICTED: odorant receptor Or1-like [Bombus impatiens] Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 156 Query range: 237 -> 307 Target range: 1948624 -> 1948281 238 : ValTyrSerLeuGluLeuSerAspValIlePheArgSerAspTrpThrSerLeuAs : 256 |||!! |||||||||:!!|||:!!:!!||||||!.! !||||||||| !!!!!:! Val***SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAs 1948624 : GTTTAGAGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGA : 1948570 257 : nAsnAsnValLysArgAlaPheLeuMetLeuMetArgArgAlaMetArgProIleG : 275 !!!. !..!|||||| !.!.|||! :!!|||! !|||||| ! !||||||| pLysAlaThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleG 1948569 : TAAAGCTACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTG : 1948513 276 : luPheThrSerIleTyrValIleSerValAsnLeuGluSerPheMetThr >>>> : 292 ||.!!! !|||:!! !|||:!!||||||||||||!!:||||||:!:.!! luIleIleSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 1948512 : AAATCATCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.... : 1948460 293 : Target Intron 1 >>>> LeuLeuLysThrSerTyrSerValPheSerVal : 302 133 bp |||||||||||||||||||||!.!!:!!:!||| ++LeuLeuLysThrSerTyrSerAlaTyrAsnVal 1948459 : .....................agTTGCTGAAAACTTCTTACTCGGCGTACAACGTT : 1948299 303 : PheGlnGlnSerGln : 307 .!!|||!::.!!:!! LeuGlnArgGlyGlu 1948298 : CTCCAACGCGGCGAA : 1948282 vulgar: gi|815904383|ref|XP_012238122.1| 237 307 . KQ414661.1 1948624 1948281 - 156 M 54 162 5 0 2 I 0 129 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948282 1948624 156 - . gene_id 2 ; sequence gi|815904383|ref|XP_012238122.1| ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1948463 1948624 . - . KQ414661.1 exonerate:protein2genome:local exon 1948463 1948624 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1948461 1948462 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1948330 1948462 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1948330 1948331 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1948282 1948329 . - . KQ414661.1 exonerate:protein2genome:local exon 1948282 1948329 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948282 1948624 156 - . alignment_id 2 ; Query gi|815904383|ref|XP_012238122.1| ; Align 1948625 238 162 ; Align 1948330 292 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815902073|ref|XP_003486905.2| PREDICTED: odorant receptor 49b-like [Bombus impatiens] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 370 -> 423 Target range: 1395323 -> 1395482 371 : SerGluAlaIleGlyHisAlaGlyTyrSerMetProTrpTyrArgTyrProCysAs : 389 ||| !:!!|||.!!:!!|||!.!|||||| |||||||||! ! ! !.! SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 390 : nLeuArgAsnProValAsnMetLeuLeuIleArgGlyGlnLysProValArgLeuT : 408 . !|||:!! !:!!! !:!:|||:!!||||||..!|||!:!! !:!!! !:!!| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 409 : hrAlaGlyLysPheIleGluLeuSerLeuGlyThrPheAlaSerMet : 423 ||||||||||||||!!:!!:|||||||||! ! !||||||!:!:!: hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnVal 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTA : 1395482 vulgar: gi|815902073|ref|XP_003486905.2| 370 423 . KQ414716.1 1395323 1395482 + 111 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395482 111 + . gene_id 1 ; sequence gi|815902073|ref|XP_003486905.2| ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395482 111 + . alignment_id 1 ; Query gi|815902073|ref|XP_003486905.2| ; Align 1395324 371 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909018|ref|XP_012240156.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 633 Query range: 135 -> 318 Target range: 1394161 -> 1395914 136 : IlePheHisValGlyGlyGlnIleGluMetLeuHisGluAlaLeuGluAsnIleSe : 154 |||||||||:!!|||||||||||||||||||||!!.:!!|||||| |||||||| IlePheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAsnIleSe 1394162 : ATATTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaatatttc : 1394216 155 : rIleLysAspGluLysHisGlySerLeuArgAsnValIleLysSerLeuIleAsnA : 173 ||||||||||||||||||| !!! !! !||||||..!! !||||||||||||:!!| rIleLysAspGluLysHisArgLeuSerArgAsnThrThrLysSerLeuIleHisA 1394217 : tattaaagATGAGAAACACAGATTATCGAGAAACACCACCAAATCATTAATTCACA : 1394273 174 : rgHisTyrArgIleIlePheAsnSerGluTyrIleGluSerLeuPheSerTyrIle : 191 |||||:!!|||||||||.!!||||||!!:! !|||||||||||||||||||||||| rgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIle 1394274 : GACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACATT : 1394327 192 : AlaLeuValGlnLeuLeuCysAsnThrValValMetCysGlyIleGlyPheLeuIl : 210 ||||||:!!|||! !||||||||||||:!!|||!!:||| !!|||||||||||||| AlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGlyPheLeuIl 1394328 : GCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGATTCTTAAT : 1394384 211 : eIleVal >>>> Target Intron 1 >>>> AlaIleAsnSerHisGlyAs : 219 |:!!:!! 464 bp |||.!!|||!!! |||:: eValIle++ ++AlaPheAsnThrAspGlyAs 1394385 : AGTAATTgt.........................agGCATTTAATACAGatggaaa : 1394875 220 : pValGlyIleValValLysIleValLeuPheTyrIleAlaIleMetLeuGluAlaP : 238 :::: :::||| ::!||||||||||||||||||! :!!||||||| nIleLysThrPheIleLysThrLeuLeuPheTyrIleAlaIleThrMetGluAlaP 1394876 : tataaaaacatttataaaaacattACTCTTTTACATCGCTATCACTATGGAAGCAT : 1394932 239 : heValPheSerTyrAlaGlyGluTyrLeuSerSerLys >>>> Target Intr : 251 ||:!!||||||!:!||||||||||||||||||!:!||| 353 bp heIlePheSerPheAlaGlyGluTyrLeuSerAsnLys++ 1394933 : TCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAAgt................ : 1394973 252 : on 2 >>>> SerLeuSerIleSerAlaSerAlaTyrGlySerSerTrpTyrLeu : 265 ||||||||||||||| !:!!||||||.!!||| !!||||||||| ++SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeu 1394974 : .........agAGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTT : 1395366 266 : LeuGluProArgAsnArgArgValValIleLeuLeuMetIleArgSerGlnArgAr : 284 |||!!:|||!:!:!!|||!.!:!!:!!||||||||||||||||||||||||||||| LeuAspProGlnAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgAr 1395367 : CTGGATCCTCAAGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACG : 1395423 285 : gLeuThrIleThrAlaGlyLysPheMetAspLeuSerMetPheGlyPheAlaSer : 303 |||||||||||||||||||||||||||||||||||||:!: |||||||||!:! gLeuThrIleThrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsn+ 1395424 : ATTAACAATCACCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATg : 1395480 304 : >>>> Target Intron 3 >>>> IleLeuLysAlaSerAlaSerTyrValS : 312 387 bp ||||||||||||||||||||||||:!!| + ++IleLeuLysAlaSerAlaSerTyrIleS 1395481 : t.........................agatcTTAAAGGCTTCTGCATCGTACATAT : 1395894 313 : erValLeuTyrAlaArgTyr : 318 ||||||||||||||! !||| erValLeuTyrAlaMetTyr 1395895 : CTGTACTGTATGCGATGTAC : 1395914 vulgar: gi|815909018|ref|XP_012240156.1| 135 318 . KQ414716.1 1394161 1395914 + 633 M 77 231 5 0 2 I 0 460 3 0 2 M 38 114 5 0 2 I 0 349 3 0 2 M 52 156 5 0 2 I 0 383 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394162 1395914 633 + . gene_id 1 ; sequence gi|815909018|ref|XP_012240156.1| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394162 1394392 . + . KQ414716.1 exonerate:protein2genome:local exon 1394162 1394392 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394393 1394394 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394393 1394856 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394855 1394856 . + . intron_id 0 ; splice_site "aG" KQ414716.1 exonerate:protein2genome:local cds 1394857 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394857 1394970 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394971 1394972 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394971 1395323 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1395322 1395323 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1395324 1395479 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395479 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1395480 1395481 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1395480 1395866 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1395865 1395866 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1395867 1395914 . + . KQ414716.1 exonerate:protein2genome:local exon 1395867 1395914 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394162 1395914 633 + . alignment_id 1 ; Query gi|815909018|ref|XP_012240156.1| ; Align 1394162 136 231 ; Align 1394857 213 114 ; Align 1395324 251 156 ; Align 1395867 303 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909018|ref|XP_012240156.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 411 Query range: 91 -> 316 Target range: 1386978 -> 1387952 92 : LeuMetLysMetAspLeuProPheAlaTyrTyrGluSerProValTyrGlnTyrVa : 110 ::::::|||::: ||| ::: ::: ||| ||| IleLeuLysIleTyrLeuLysTyrIleHisThrGluIleThrPheTyrTyrIleTy 1386979 : atacttaaaatatatttaaaatacattcacactgaaataactttttactatattta : 1387033 111 : lPheLeuValGlnPheLeuGlnLeuLeuAlaValGlyIleGlyMetAlaIleLeuA : 129 |||::::::::: !! !.!.!!! !.!! ||| ::: |||:!! rPheIleIleArgHisGlnAspPheAsnThrTyrLeuIlePheLeuLeuIleIle* 1387034 : ttttataattaggCATCAAGATTTTAACACTTatctaatatttttgttaatcaTTT : 1387090 130 : snAlaLeuIleIleThrLeuIlePheHisValGlyGlyGlnIleGluMetLeuHis : 147 ! ! !:!: !! !|||!!.||||||||||||||||||!!::!:||| ! **LysAlaSerLeuLeu***IleLeuHisValGlyGlyGlnIleAspLeuLeuCys 1387091 : GAAAAGCTTCACTGTTGTAGATATTACATGTTGGTGGTCAGATCGATTTATTGTGT : 1387144 148 : GluAlaLeuGluAsnIleSerIleLysAspGluLysHisGlySerLeuArgAsnVa : 166 :!! !:!!..!:!!|||||| !!!. !!|||||| ! ! ! !!! !!:! .. GlnAsnMetArgAspIleSerArgAsnHisGluLysLysValProGlnLysLeuTh 1387145 : CAAAACATGAGAGACATTTCTCGTAATCATGAGAAGAAAGTACCGCAAAAACTGAC : 1387201 167 : lIleLysSerLeuIleAsnArgHisTyrArgIleIlePheAsnSerGluTyrIleG : 185 !||||||..!:!!:!! !|||||| ! ||||||||| |||:!! !!|||| rIleLysAspValValValArgHisGlnArgIleIleArgLeuSerLysAsnIleG 1387202 : AATAAAGGATGTCGTTGTTAGGCATCAACGAATTATACGACTGTCTAAAAATATCG : 1387258 186 : luSerLeuPheSerTyrIleAlaLeuValGlnLeuLeuCysAsnThrValValMet : 203 ||!!!:!!|||!!!||||||:!!||| |||...||| ||| :!!|||!!: luThrValPheThrTyrIleSerLeuCysGlnPheLeuSerAsnMetLeuValIle 1387259 : AGACAGTTTTTACTTATATATCATTATgccaatttttatcgaatatgcTGGTTATC : 1387312 204 : CysGlyIleGlyPheLeuIleIleVal >>>> Target Intron 1 >>>> : 213 ||| !|||.!!|||:!!:!::!!..! 85 bp CysPheIleSerPheValLeuValThr++ ++ 1387313 : TGTTTCATAAGCTTCGTTTTGGTAACCgt.........................ag : 1387425 214 : AlaIleAsnSerHisGlyAspValGlyIleValValLysIleValLeuPheTyrIl : 231 :!!:!:|||!!!.!. ! ..!|||:!!:!!:!!||| ! !!! !!:!|||:! SerLeuAsnThrGluGlnThrThrGlyLeuIleLeuLysCysPheProTyrTyrVa 1387426 : TCCTTGAACACGGAACAGACAACTGGATTAATACTGAAATGTTTTCCCTATTACGT : 1387481 232 : eAlaIleMetLeuGluAlaPheValPheSerTyrAlaGlyGluTyrLeuSerSerL : 250 !|||:!!! ! !|||||||||:!!!!.!!!|||.!!||||||||||||!!!|||| lAlaValAsnCysGluAlaPheIleLeuCysTyrThrGlyGluTyrLeuThrSerL 1387482 : TGCTGTTAATTGTGAAGCATTCATTTTATGTTATACCGGAGAATATCTAACCTCTA : 1387538 251 : ys >>>> Target Intron 2 >>>> SerLeuSerIleSerAlaSerAlaT : 259 || 79 bp ||| ! !!|||!!! !|||...| ys++ ++SerGluArgIleThrGlnSerValT 1387539 : AGgt.........................agagtgAACGTATTACACAATCtgtgt : 1387644 260 : yrGlySerSerTrpTyrLeuLeuGluProArgAsnArgArgValValIleLeuLeu : 277 ||... |||||| !|||:!!||||||.!. !|||:::|||:::|||::: yrAsnPheLeuTrpTyrAspLeuLysProArgGluAlaArgIleValLeuLeuIle 1387645 : acaattttctttggTACGATCTAAAACCTCGAGAAGCTCgtattgtattattaata : 1387698 278 : MetIleArgSerGlnArgArgLeuThrIleThrAlaGlyLysPheMetAspLeuSe : 296 ::::::|||||||||!:!..!|||! !:!!|||||||||||||||:!!:!!||||| IleLeuArgSerGlnLysGluLeuIleLeuThrAlaGlyLysPheValAsnLeuSe 1387699 : atattacgaTCTCAGAAAGAGTTAATACTCACTGCGGGCAAATTTGTGAATCTTTC : 1387755 297 : rMetPheGlyPheAlaSer >>>> Target Intron 3 >>>> IleLeuLy : 305 |:!! !!.!||||||!:: 135 bp :::||||| rLeuAlaAlaPheAlaAsn++ ++MetLeuLy 1387756 : CTTGGCTGCATTTGCTAAtgt.........................agatgCTAAA : 1387917 306 : sAlaSerAlaSerTyrValSerValLeuTyrAla : 316 ||||||||||||||||||||||||||||:!!||| sAlaSerAlaSerTyrValSerValLeuHisAla 1387918 : AGCTTCAGCCTCGTACGTATCTGTTTTGCATGCA : 1387952 vulgar: gi|815909018|ref|XP_012240156.1| 91 316 . KQ414716.1 1386978 1387952 + 411 M 121 363 5 0 2 I 0 81 3 0 2 M 38 114 5 0 2 I 0 75 3 0 2 M 52 156 5 0 2 I 0 131 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1386979 1387952 411 + . gene_id 2 ; sequence gi|815909018|ref|XP_012240156.1| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1386979 1387341 . + . KQ414716.1 exonerate:protein2genome:local exon 1386979 1387341 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387342 1387343 . + . intron_id 1 ; splice_site "Gt" KQ414716.1 exonerate:protein2genome:local intron 1387342 1387426 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387425 1387426 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387427 1387540 . + . KQ414716.1 exonerate:protein2genome:local exon 1387427 1387540 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387541 1387542 . + . intron_id 2 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387541 1387619 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1387618 1387619 . + . intron_id 1 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 3 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387952 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387952 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1386979 1387952 411 + . alignment_id 2 ; Query gi|815909018|ref|XP_012240156.1| ; Align 1386979 92 363 ; Align 1387427 213 114 ; Align 1387620 251 156 ; Align 1387911 303 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909018|ref|XP_012240156.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 364 Query range: 2 -> 136 Target range: 1390643 -> 1392022 3 : AlaGlnValPheGlnTyrArgTyrIleMetLysAsnValSerSerGlyAsnLeuAl : 21 !.!|||:!!||||||||||||||||||!!:|||:!!:!!..!.!!.!!|||||||| ValGlnIlePheGlnTyrArgTyrIleIleLysHisLeuAspGlySerAsnLeuAl 1390644 : GTACAAATATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGTAATCTGGC : 1390698 22 : aAspValIleGluSerAlaSerThrSerLeuProTyrThrValLeuLeuPheLysL : 40 |:!!:!!|||!!:|||!.!.!!|||!!!|||||||||!:!:!!|||! ! |||| aAsnLeuIleAspSerValGlyThrThrLeuProTyrSerLeuLeuTyrValLysL 1390699 : GAACTTAATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTATgtcaaat : 1390755 41 : euIleSerPheTrpIleLysArg{Gl} >>>> Target Intron 1 >>>> : 48 ||||| |||||| !||||||{||} 884 bp euIleIlePheTrpThrLysArg{Gl}++ ++ 1390756 : taattattttctggaCTAAACGT{GG}gt.........................ag : 1391663 49 : {y}IlePheLysAsnMetLeuValGlyMetTyrTyrAspTrpIleAsnSerSerAl : 66 {|}||||||:::||||||||||||||||||! ! !!||||||! !|||||||||:! {y}IlePheGluAsnMetLeuValGlyMetSerAsnAspTrpSerAsnSerSerSe 1391664 : {a}atattcgaaaatatgtTAGTGGGAATGTCTAACGATTGGAGTAATTCTTCATC : 1391717 67 : aAspLysAlaAsnValAspValMetThrAsnLysAlaGluLeuAlaTyrArgCysS : 85 ! ||| !:!!:!!:!!!.!|||! !!:!|||||||||||||||||||||! !| rThrLysPheAspIleAsnAlaMetIleSerLysAlaGluLeuAlaTyrArgTyrS 1391718 : AACGAAATTTGACATAAACGCCATGATAAGTAAAGCTGAACTTGCGTATCGTTATT : 1391774 86 : erTyrSerIlePhe{G} >>>> Target Intron 2 >>>> {ly}LeuLeu : 92 || ! !|||.!.{ } 93 bp { !}|||||| erLysValIleMet{L}+- ++{ys}LeuLeu 1391775 : CGAAGGTAATTATG{A}gc.........................ag{AA}CTTTTG : 1391888 93 : MetLysMetAspLeuProPheAlaTyrTyrGluSerProValTyrGlnTyrValPh : 111 ||||||||||||||||||||||||||||||:!!!!!|||..!||||||!::||||| MetLysMetAspLeuProPheAlaTyrTyrLysThrProThrTyrGlnTrpValPh 1391889 : ATGAAAATGGACCTCCCGTTTGCGTATTACAAAACACCGACGTATCAATGGGTATT : 1391945 112 : eLeuValGlnPheLeuGlnLeuLeuAlaValGlyIleGlyMetAlaIleLeuAsnA : 130 |:!!||||||||||||||||||||| ! !!.! !!.!!!:!.!!!:|||:!!| eValValGlnPheLeuGlnLeuLeuIleAsnAlaSerAlaIleGlyMetLeuAspA 1391946 : TGTTGTACAATTTCTTCAGCTGTTGATAAATGCATCTGCTATTGGTATGTTAGATG : 1392002 131 : laLeuIleIleThrLeuIle : 136 |||||||||||||||||:!! laLeuIleIleThrLeuVal 1392003 : CTTTGATAATTACGTTGGTA : 1392022 vulgar: gi|815909018|ref|XP_012240156.1| 2 136 . KQ414716.1 1390643 1392022 + 364 M 45 135 S 0 2 5 0 2 I 0 880 3 0 2 S 1 1 M 41 123 S 0 1 5 0 2 I 0 89 3 0 2 S 1 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390644 1392022 364 + . gene_id 3 ; sequence gi|815909018|ref|XP_012240156.1| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1390644 1390780 . + . KQ414716.1 exonerate:protein2genome:local exon 1390644 1390780 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1390781 1390782 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1390781 1391664 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1391663 1391664 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1391665 1391789 . + . KQ414716.1 exonerate:protein2genome:local exon 1391665 1391789 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1391790 1391791 . + . intron_id 2 ; splice_site "GC" KQ414716.1 exonerate:protein2genome:local intron 1391790 1391882 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1391881 1391882 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1391883 1392022 . + . KQ414716.1 exonerate:protein2genome:local exon 1391883 1392022 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390644 1392022 364 + . alignment_id 3 ; Query gi|815909018|ref|XP_012240156.1| ; Align 1390644 3 135 ; Align 1391666 49 123 ; Align 1391885 91 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909018|ref|XP_012240156.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 166 -> 212 Target range: 1401096 -> 1401234 167 : IleLysSerLeuIleAsnArgHisTyrArgIleIlePheAsnSerGluTyrIleGl : 185 |||||| ...|||||||||||| ! ..!|||||| !! !:!!||| ||||| IleLysPhePheIleAsnArgHisGlnGluIleIleValPheAlaGluArgIleGl 1401097 : ataaaattcttcattaACAGACATCAGGAAATTATTGTTTTTGCAGAAAGAATTGA : 1401151 186 : uSerLeuPheSerTyrIleAlaLeuValGlnLeuLeuCysAsnThrValValMetC : 204 |!.!||||||!!!|||!!:|||||| !||||||:!!! !||||||:!!:!!!!:| uLysLeuPheThrTyrMetAlaLeuSerGlnLeuValSerAsnThrIleIleIleC 1401152 : GAAACTTTTTACATACATGGCTCTCAGTCAACTTGTGTCCAATACGATAATTATAT : 1401208 205 : ysGlyIleGlyPheLeuIleIleVal : 212 || !!:!!|||||||||:!!:!!:!! ysCysValGlyPheLeuValValIle 1401209 : GTTGCGTAGGATTTCTCGTTGTAATT : 1401234 vulgar: gi|815909018|ref|XP_012240156.1| 166 212 . KQ414716.1 1401096 1401234 + 132 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401097 1401234 132 + . gene_id 4 ; sequence gi|815909018|ref|XP_012240156.1| ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1401097 1401234 . + . KQ414716.1 exonerate:protein2genome:local exon 1401097 1401234 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401097 1401234 132 + . alignment_id 4 ; Query gi|815909018|ref|XP_012240156.1| ; Align 1401097 167 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909105|ref|XP_012240198.1| PREDICTED: odorant receptor 4-like isoform X1 [Bombus impatiens] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 608 Query range: 197 -> 375 Target range: 1401021 -> 1402805 198 : IleLeuHisLeuGlyCysGlnIleAspIleMetCysGlnAsnLeuThrAspValPh : 216 :!!|||||||||||||||||||||||||||||||||!:!|||||| !||||||! ValLeuHisLeuGlyCysGlnIleAspIleMetCysArgAsnLeuLeuAspValSe 1401022 : GTACTTCATCTAGGATGTCAAATCGACATCATGTGCCGAAATTTGCTAGACGTTTC : 1401076 217 : eSerLysThrGluAsnLysLeuLysPhePheIleSerArgTyrGlnGluIleIleA : 235 !! !||| ! ...::::::||||||||||||::!|||:!!||||||||||||! rPheLysAspGlyLysGlnIleLysPhePheIleAsnArgHisGlnGluIleIleV 1401077 : CTTCAAAGACggaaaacaaataaaattcttcattaACAGACATCAGGAAATTATTG : 1401133 236 : laPheAlaGluLysIleGluLysLeuPheThrTyrMetAlaLeuSerGlnLeuVal : 253 .!|||||||||!:!|||||||||||||||||||||||||||||||||||||||||| alPheAlaGluArgIleGluLysLeuPheThrTyrMetAlaLeuSerGlnLeuVal 1401134 : TTTTTGCAGAAAGAATTGAGAAACTTTTTACATACATGGCTCTCAGTCAACTTGTG : 1401187 254 : SerAsnThrValAsnThrCysCysGluGlyPheLeuIleValLeu >>>> Targ : 269 |||||||||:!!! !! !||||||! !|||||||||:!!|||:!! SerAsnThrIleIleIleCysCysValGlyPheLeuValValIle++ 1401188 : TCCAATACGATAATTATATGTTGCGTAGGATTTCTCGTTGTAATTgt......... : 1401237 270 : et Intron 1 >>>> AlaValAsnAspGluAsnGlyLeuAlaIleAspIleLe : 281 83 bp ||||||:!! !!!:|||||| :!! !:!:|| ++AlaValHisIleAspAsnGly------ValProLeuLe 1401238 : ................aggCAGTACATATCGACAATGGA------GTTCCTCTGTT : 1401348 282 : uIleLysSerIleValPheTyrIleValIleCysLeuGluValPheIleTyrCysP : 300 |:!!||||||::::::||||||:::|||||||||||||||!.!||||||||||||| uLeuLysSerLeuLeuPheTyrValValIleCysLeuGluAlaPheIleTyrCysP 1401349 : ACTCAaatctcttttattttatgtgGTTATTTGTTTAGAAGCGTTTATATACTGCT : 1401405 301 : heAlaGlyGluTyrLeuArgThrLys >>>> Target Intron 2 >>>> S : 309 ||!.!||||||||||||!!!! !||| 1004 bp | heValGlyGluTyrLeuSerIleLys++ ++S 1401406 : TTGTCGGAGAATATCTCAGTATCAAGgt.........................agA : 1402436 310 : erGlnLeuIleGlyAspThrAlaTyrAsnMetLeuTrpTyrAspLeuArgProAsn : 327 ||||||||||||||:!!|||||||||.!..!.|||||||||||||||||| !!!.! erGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThr 1402437 : GCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACT : 1402490 328 : LysSerArgLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrLeuTh : 346 :!!|||!:!||||||||||||||||||||||||||||||||||||||||||!..|| GluSerGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheTh 1402491 : GAAAGCCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACGTttac : 1402547 347 : rPheGlyLysPheSerAsnLeuSerLeuGluSerPheThrGly >>>> Target : 361 ||||||||||||||||:::|||||||||||||||||||||!.! 1 rPheGlyLysPheSerSerLeuSerLeuGluSerPheThrAla++ 1402548 : ttttggaaaattttcaagtctCTCCTTGGAAAGCTTTACGGCCgt........... : 1402594 362 : Intron 3 >>>> IleMetLysValSerAlaSerTyrMetSerValLeuLeuA : 374 69 bp ||||||||||||||||||||||||!!:||||||||||||| ++IleMetLysValSerAlaSerTyrIleSerValLeuLeuA 1402595 : ..............agATCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTG : 1402800 375 : laLeu : 375 ||:!! laVal 1402801 : CAGTG : 1402805 vulgar: gi|815909105|ref|XP_012240198.1| 197 375 . KQ414716.1 1401021 1402805 + 608 M 71 213 5 0 2 I 0 79 3 0 2 M 7 21 G 2 0 M 31 93 5 0 2 I 0 1000 3 0 2 M 52 156 5 0 2 I 0 165 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401022 1402805 608 + . gene_id 1 ; sequence gi|815909105|ref|XP_012240198.1| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401022 1401234 . + . KQ414716.1 exonerate:protein2genome:local exon 1401022 1401234 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401235 1401236 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401235 1401317 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1401316 1401317 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1401318 1401431 . + . KQ414716.1 exonerate:protein2genome:local exon 1401318 1401431 . + . insertions 0 ; deletions 2 KQ414716.1 exonerate:protein2genome:local splice5 1401432 1401433 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401432 1402435 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1402434 1402435 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402436 1402591 . + . KQ414716.1 exonerate:protein2genome:local exon 1402436 1402591 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1402592 1402593 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1402592 1402760 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1402759 1402760 . + . intron_id 2 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402761 1402805 . + . KQ414716.1 exonerate:protein2genome:local exon 1402761 1402805 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401022 1402805 608 + . alignment_id 1 ; Query gi|815909105|ref|XP_012240198.1| ; Align 1401022 198 213 ; Align 1401318 269 21 ; Align 1401339 278 93 ; Align 1402436 309 156 ; Align 1402761 361 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909105|ref|XP_012240198.1| PREDICTED: odorant receptor 4-like isoform X1 [Bombus impatiens] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 410 Query range: 194 -> 361 Target range: 1408207 -> 1409208 195 : PheMetMetIleLeuHisLeuGlyCysGlnIleAspIleMetCysGlnAsnLeuTh : 213 !:!:!: !:!:||||||||||||||||||||||||||||||||||||!..|||! TyrLeu***ValLeuHisLeuGlyCysGlnIleAspIleMetCysGlnThrLeuLy 1408208 : TACCTTTAGGTGCTTCATCTAGGTTGTCAAATCGATATTATGTGCCAGACATTAAA : 1408262 214 : rAspValPheSerLysThrGluAsnLysLeuLysPhePheIleSerArgTyrGlnG : 232 !!!:||| !! !|||!.!:!!!.!:!!|||!:!|||||||||||||||:!!|||: sGluValProTyrLysAsnLysThrGlnLeuArgPhePheIleSerArgHisGlnG 1408263 : GGAGGTTCCTTATAAGAATAAAACTCAACTGAGATTCTTCATCAGCAGACATCAAC : 1408319 233 : luIleIleAlaPheAlaGluLysIleGluLysLeuPheThrTyrMetAlaLeuSer : 250 !!|||||| !|||||||||!:!|||||||||||||||||||||:!:||||||||| lnIleIleIlePheAlaGluArgIleGluLysLeuPheThrTyrLeuAlaLeuSer 1408320 : AGATCATCATATTTGCAGAGAGAATAGAAAAACTGTTTACGTATCTAGCACTTAGT : 1408373 251 : GlnLeuValSerAsnThrValAsnThrCysCysGluGlyPheLeuIleValLeu : 269 ||||||:!!|||||||||:!!! !|||||||||! !|||!:!:!!|||!.!!!! GlnLeuLeuSerAsnThrLeuIleThrCysCysValGlyTyrIleIleAlaPhe++ 1408374 : CAACTTCTCTCGAATACCCTAATTACTTGCTGCGTGGGTTATATTATCGCATTTgt : 1408430 270 : >>>> Target Intron 1 >>>> AlaValAsnAspGluAsnGlyLeuAlaIl : 278 92 bp |||:!!.!.:!!.!.|||||| .! ++AlaLeuGlnAsnAsnAsnGly------Ph 1408431 : .........................agGCACTACAAAATAATAATGGA------TT : 1408543 279 : eAspIleLeuIleLysSerIleValPheTyrIleValIle{Cy} >>>> Targe : 292 ! ! !!:|||||||||! !:!!|||!:!|||!!:!.!:!:{||} eLysMetLeuIleLysPheValValTyrTyrMetAlaVal{Cy}-+ 1408544 : TAAAATGTTGATCAAATTTGTTGTATATTACATGGCTGTG{TG}ct.......... : 1408589 293 : t Intron 2 >>>> {s}LeuGluValPheIleTyrCysPheAlaGlyGluTyr : 304 414 bp {|} ||| ! !..! !.!. ! +-{s}CysThrTyrPhe***IleHisArgCys***AsnIle 1408590 : ...............aa{t}tgtacatatttttgaATACATCGTTGTTAAAATATC : 1409035 305 : LeuArgThrLysSerGlnLeuIleGlyAspThrAlaTyrAsnMetLeuTrpTyrAs : 323 :!! ! !:::|||:::|||||||||||||||||||||.!..!.|||||||||:! IleAspPheGlnSerLysLeuIleGlyAspThrAlaTyrGluPheLeuTrpTyrAs 1409036 : ATTGATTTTcagagtaaactgattggagACACGGCGTATGAATTTCTTTGGTATAA : 1409092 324 : pLeuArgProAsnLysSerArgLeuLeuIleProValIleLeuArgSerGlnLysG : 342 !:!!!.! !!!!.:!!|||||||||:!!:!:! !|||||||||||||||||||||| nMetHisSerLysGluSerArgLeuMetLeuLeuValIleLeuArgSerGlnLysG 1409093 : TATGCATTCGAAGGAAAGCCGACTTATGTTGCTTGTAATACTACGATCACAGAAAG : 1409149 343 : lyPheThrLeuThrPheGlyLysPheSerAsnLeuSerLeuGluSerPheThrGly : 360 ||||||||...|||||||||||||||::::::||||||:!!|||||||||.!!||| lyPheThrPheThrPheGlyLysPheAlaSerLeuSerMetGluSerPheAlaGly 1409150 : GATTTACtttcacttttggaaaatttgcaagtCTTTCCATGGAAAGTTTTGCAGGC : 1409203 361 : Ile : 361 :!! Val 1409204 : GTA : 1409208 vulgar: gi|815909105|ref|XP_012240198.1| 194 361 . KQ414716.1 1408207 1409208 + 410 M 74 222 5 0 2 I 0 88 3 0 2 M 7 21 G 2 0 M 14 42 S 0 2 5 0 2 I 0 410 3 0 2 S 1 1 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408208 1409208 410 + . gene_id 2 ; sequence gi|815909105|ref|XP_012240198.1| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408208 1408429 . + . KQ414716.1 exonerate:protein2genome:local exon 1408208 1408429 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408430 1408431 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408430 1408521 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1408520 1408521 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1408522 1408586 . + . KQ414716.1 exonerate:protein2genome:local exon 1408522 1408586 . + . insertions 0 ; deletions 2 KQ414716.1 exonerate:protein2genome:local splice5 1408587 1408588 . + . intron_id 2 ; splice_site "CT" KQ414716.1 exonerate:protein2genome:local intron 1408587 1409000 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1408999 1409000 . + . intron_id 1 ; splice_site "aa" KQ414716.1 exonerate:protein2genome:local cds 1409001 1409208 . + . KQ414716.1 exonerate:protein2genome:local exon 1409001 1409208 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408208 1409208 410 + . alignment_id 2 ; Query gi|815909105|ref|XP_012240198.1| ; Align 1408208 195 222 ; Align 1408522 269 21 ; Align 1408543 278 42 ; Align 1409002 293 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909105|ref|XP_012240198.1| PREDICTED: odorant receptor 4-like isoform X1 [Bombus impatiens] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 405 Query range: 83 -> 198 Target range: 1398613 -> 1398958 84 : TyrGlyLeuPheCysAspIleLeuSerThrMetGluGluAspCysGlnLysTyrAl : 102 :!!.!!:!!||| !!||||||||||||||||||||||||||||||||||||||||| HisSerValPheSerAspIleLeuSerThrMetGluGluAspCysGlnLysTyrAl 1398614 : CACAGCGTATTTAGTGACATTTTATCAACCATGGAAGAGGATTGTCAGAAATATGC : 1398668 103 : aIleMetAspIleAsnAsnLeuIleThrLysThrGlyLeuPheSerPheTyrMetT : 121 | !!!:|||||||||!!.|||!!::!!|||||||||! ...|||||||||:::| aAlaIleAspIleAsnLysLeuMetSerLysThrGlyGlnLeuSerPheTyrLeuT 1398669 : TGCTATAGATATAAATAAGTTGATGTCAAAAACCGGACAgctatctttttatttaa : 1398725 122 : hrSerMetIleMetSerSerTyrLeuValSerAlaValCysTyrLeuAlaGlyAla : 139 |||||!!::!!||||||! !|||:!!!.!||||||!.!! !|||:!!.!!..!.!! hrSerIleValMetSerLeuTyrMetAlaSerAlaAlaPheTyrIleThrAsnThr 1398726 : caagcATTGTTATGTCTTTGTATATGGCATCTGCAGCATTTTACATAACTAATACT : 1398779 140 : IleAlaPheGlnGlyThrAsnAspSerMetSerArgGluLeuLeuLeuLysMetAs : 158 |||!.!|||||||||!.!|||! !|||:!:|||||||||||||||:!!|||||||| IleGlyPheGlnGlyAsnAsnAlaSerValSerArgGluLeuLeuMetLysMetAs 1398780 : ATTGGATTTCAAGGAAATAATGCTTCAGTATCTCGGGAGCTCCTTATGAAAATGGA : 1398836 159 : pLeuProPheGluThrSerGluSerProAsnTyrGluLeuValValThrThrGlnP : 177 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| pLeuProPheGluThrSerGluSerProAsnTyrGluLeuValValThrThrGlnV 1398837 : TTTGCCTTTCGAGACCAGCGAATCGCCGAATTACGAACTTGTAGTAACTACACAGG : 1398893 178 : heIleIleHisPheSerAlaAlaLeuAlaPheGlyThrPheThrAlaLeuLeuPhe : 195 !!:!!||||||!!.|||!.!|||:!!|||!:!|||.!!|||!.!|||||||||!!. alLeuIleHisLeuSerValAlaValAlaTyrGlyAlaPheAsnAlaLeuLeuLeu 1398894 : TCCTTATTCACTTATCAGTGGCCGTAGCATACGGTGCATTCAATGCTCTTCTCTTA : 1398947 196 : MetMetIle : 198 |||:!!:!! MetValVal 1398948 : ATGGTGGTA : 1398958 vulgar: gi|815909105|ref|XP_012240198.1| 83 198 . KQ414716.1 1398613 1398958 + 405 M 115 345 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1398614 1398958 405 + . gene_id 3 ; sequence gi|815909105|ref|XP_012240198.1| ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1398614 1398958 . + . KQ414716.1 exonerate:protein2genome:local exon 1398614 1398958 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1398614 1398958 405 + . alignment_id 3 ; Query gi|815909105|ref|XP_012240198.1| ; Align 1398614 84 345 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909105|ref|XP_012240198.1| PREDICTED: odorant receptor 4-like isoform X1 [Bombus impatiens] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 300 Query range: 83 -> 198 Target range: 1405755 -> 1406100 84 : TyrGlyLeuPheCysAspIleLeuSerThrMetGluGluAspCysGlnLysTyrAl : 102 :::...|||.!!! !||||||:!!|||||||||||||||||||||:!!|||||||| HisSerLeuLeuTyrAspIleIleSerThrMetGluGluAspCysLysLysTyrAl 1405756 : cacagtCTACTTTACGACATTATCTCGACCATGGAAGAAGACTGTAAAAAGTACGC : 1405810 103 : aIleMetAspIleAsnAsnLeuIleThrLysThrGlyLeuPheSerPheTyrMetT : 121 |:!!:::||| ...|||||||||:::||||||!.!! !.!.|||||| :!:| aValLeuAspThrLysAsnLeuIleSerLysThrAlaHisLeuSerPheArgLeuT 1405811 : TGTTCttgatacaaaaaatttaatatcaaaaaCAGCACATCTATCTTTTCGATTAA : 1405867 122 : hrSerMetIleMetSerSerTyrLeuValSerAlaValCysTyrLeuAlaGlyAla : 139 ||!:!!!::!:!!:!!!! !! !:!! !|||.!!!.!|||||| ! !|||!.! hrAsnIleValIleCysIleCysValSerSerThrAlaCysTyrAlaIleGlyVal 1405868 : CCAATATAGTGATATGTATCTGTGTATCATCCACGGCATGTTATGCAATTGGAGTT : 1405921 140 : IleAlaPheGlnGlyThrAsnAspSerMetSerArgGluLeuLeuLeuLysMetAs : 158 :!:||| ||| !!|||||| !!! !!||||||||||||:!!|||||||| LeuAlaProGlnArgThrAsnIleThrAlaProArgGluLeuLeuIleLysMetAs 1405922 : TTGGCGCCACAAAGGACTAATATAACAGCACCTCGAGAACTTTTGATAAAAATGGA : 1405978 159 : pLeuProPheGluThrSerGluSerProAsnTyrGluLeuValValThrThrGlnP : 177 ||||||||||.!.|||!:!.!.||||||! !||||||||||||:!!..! !|||! pLeuProPheAsnThrAsnAsnSerProIleTyrGluLeuValIleValLeuGlnT 1405979 : CTTGCCATTTAATACGAACAATTCGCCTATTTACGAGCTGGTAATAGTTTTACAAT : 1406035 178 : heIleIleHisPheSerAlaAlaLeuAlaPheGlyThrPheThrAlaLeuLeuPhe : 195 :!:!! ! ! ! |||.!!|||!!!.!!||||||..!|||!:!::!||||||!!. yrLeuCysLysValSerThrAlaPheThrPheGlyValPheSerSerLeuLeuLeu 1406036 : ACCTATGCAAAGTATCGACAGCTTTTACGTTTGGTGTATTCAGCAGTCTGCTTTTG : 1406089 196 : MetMetIle : 198 ||||||:!! MetMetVal 1406090 : ATGATGGTA : 1406100 vulgar: gi|815909105|ref|XP_012240198.1| 83 198 . KQ414716.1 1405755 1406100 + 300 M 115 345 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1405756 1406100 300 + . gene_id 4 ; sequence gi|815909105|ref|XP_012240198.1| ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1405756 1406100 . + . KQ414716.1 exonerate:protein2genome:local exon 1405756 1406100 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1405756 1406100 300 + . alignment_id 4 ; Query gi|815909105|ref|XP_012240198.1| ; Align 1405756 84 345 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909105|ref|XP_012240198.1| PREDICTED: odorant receptor 4-like isoform X1 [Bombus impatiens] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 298 Query range: 218 -> 375 Target range: 1394242 -> 1395911 219 : ThrGluAsnLysLeuLysPhePheIleSerArgTyrGlnGluIleIleAlaPheAl : 237 :!!..!|||! !|||! !!.||| !|||:!!!!...!|||||| ! !:! SerArgAsnThrThrLysSerLeuIleHisArgHisHisArgIleIleIleAsnSe 1394243 : TCGAGAAACACCACCAAATCATTAATTCACAGACATCATCGAATCATTATTAATTC : 1394297 238 : aGluLysIleGluLysLeuPheThrTyrMetAlaLeuSerGlnLeuValSerAsnT : 256 !!!:...||||||!..||||||:!!|||!!:||||||! !|||! !:!!!!!|||| rAspSerIleGluSerLeuPheSerTyrIleAlaLeuMetGlnTrpLeuCysAsnT 1394298 : GGACTCTATCGAGAGTCTTTTTTCATACATTGCTTTGATGCAGTGGTTATGTAACA : 1394354 257 : hrValAsnThrCysCysGluGlyPheLeuIleValLeu >>>> Target Intr : 269 ||:!! !! !|||||| !|||||||||||||||:!! 464 bp hrLeuValIleCysCysIleGlyPheLeuIleValIle++ 1394355 : CGCTCGTTATATGTTGCATAGGATTCTTAATAGTAATTgt................ : 1394395 270 : on 1 >>>> AlaValAsnAspGluAsnGlyLeuAlaIleAspIleLeuIleLys : 283 ||| !!||| !::...... ||| ...|||||| ++AlaPheAsnThrAspGlyAsn------IleLysThrPheIleLys 1394396 : .........agGCATTTAATACAGatggaaat------ataaaaacatttataaaa : 1394893 284 : SerIleValPheTyrIleValIleCysLeuGluValPheIleTyrCysPheAlaGl : 302 :::::!:!!|||||||||!.!||| !:!!|||!.!||||||!:!! !|||||||| ThrLeuLeuPheTyrIleAlaIleThrMetGluAlaPheIlePheSerPheAlaGl 1394894 : acattACTCTTTTACATCGCTATCACTATGGAAGCATTCATCTTCTCCTTTGCCGG : 1394950 303 : yGluTyrLeuArgThrLys >>>> Target Intron 2 >>>> SerGlnLe : 311 ||||||||||!!!!.!||| 353 bp |||! !! yGluTyrLeuSerAsnLys++ ++SerLeuSe 1394951 : AGAATATCTCAGTAACAAAgt.........................agAGTCTATC : 1395330 312 : uIleGlyAspThrAlaTyrAsnMetLeuTrpTyrAspLeuArgProAsnLysSerA : 330 !|||.!!:!!.!!||||||!:! ! !|||||| !||| !|||.!. ! !!!! rIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGlnAspArgH 1395331 : AATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCAAGACAGAC : 1395387 331 : rgLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrLeuThrPheGly : 348 .!:!!:!!|||! !:!!!!::!!|||||||||!:! !!!!.|||:!!||| !||| isIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleThrAlaGly 1395388 : ATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCACCGCTGGA : 1395441 349 : LysPheSerAsnLeuSerLeuGluSerPheThrGly >>>> Target Intron : 361 ||||||! !:!!||||||||||||.!!|||.!!..! 387 bp LysPheMetAspLeuSerLeuGluGlyPheAlaAsn++ 1395442 : AAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATgt.................. : 1395482 362 : 3 >>>> IleMetLysValSerAlaSerTyrMetSerValLeuLeuAlaLeu : 375 |||:!:|||!.!||||||||||||!!:|||||||||! !|||:!! ++IleLeuLysAlaSerAlaSerTyrIleSerValLeuTyrAlaMet 1395483 : .......agatcTTAAAGGCTTCTGCATCGTACATATCTGTACTGTATGCGATG : 1395911 vulgar: gi|815909105|ref|XP_012240198.1| 218 375 . KQ414716.1 1394242 1395911 + 298 M 50 150 5 0 2 I 0 460 3 0 2 M 7 21 G 2 0 M 31 93 5 0 2 I 0 349 3 0 2 M 52 156 5 0 2 I 0 383 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394243 1395911 298 + . gene_id 5 ; sequence gi|815909105|ref|XP_012240198.1| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394243 1394392 . + . KQ414716.1 exonerate:protein2genome:local exon 1394243 1394392 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394393 1394394 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394393 1394856 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394855 1394856 . + . intron_id 0 ; splice_site "aG" KQ414716.1 exonerate:protein2genome:local cds 1394857 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394857 1394970 . + . insertions 0 ; deletions 2 KQ414716.1 exonerate:protein2genome:local splice5 1394971 1394972 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394971 1395323 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1395322 1395323 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1395324 1395479 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395479 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1395480 1395481 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1395480 1395866 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1395865 1395866 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1395867 1395911 . + . KQ414716.1 exonerate:protein2genome:local exon 1395867 1395911 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394243 1395911 298 + . alignment_id 5 ; Query gi|815909105|ref|XP_012240198.1| ; Align 1394243 219 150 ; Align 1394857 269 21 ; Align 1394878 278 93 ; Align 1395324 309 156 ; Align 1395867 361 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909105|ref|XP_012240198.1| PREDICTED: odorant receptor 4-like isoform X1 [Bombus impatiens] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 248 Query range: 3 -> 198 Target range: 1390535 -> 1392022 4 : AsnThrIleSerProSerValLysPheGlyLeuHisPheCysGlyValTrpProGl : 22 !!.!:!||||||! ! !!|||:!!.!!||||||...!!. !|||:!!|||||||| LysSerIleSerArgProValGluIleGlyLeuArgLeuThrGlyIleTrpProGl 1390536 : AAAAGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGGAATTTGGCCAGG : 1390590 23 : yThrProPheHisPheLeuHisLysLeuCysTrpValIleAlaIleIleThrLeuG : 41 |:!! !!!:!.!..!!:!! !::!:!! !|||:!!||| !!!:! !..!:!!| ySerSerTyrGluIleIleValArgValThrTrpIleIleLeuMetThrValValG 1390591 : TTCATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTATGACAGTTGTAC : 1390647 42 : lnThrTyrGlnTyrLysTyrIleValIleHisTyrAsnThrAspThrLeuMetAsn : 59 ||! !!:!||||||::!||||||:!!! ||| !:!! !..!!.!||| !||| lnIlePheGlnTyrArgTyrIleIleLysHisLeuAspGlySerAsnLeuAlaAsn 1390648 : AAATATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGTAATCTGGCGAAC : 1390701 60 : IleAlaGluAsnLeuSerIleAlaValProPheSerLeuValLeuIleLysLeuPh : 78 :!! !!!:!:!:!!.!!! !.!!:!!|||!:!||||||:!!! !:::||||||.. LeuIleAspSerValGlyThrThrLeuProTyrSerLeuLeuTyrValLysLeuIl 1390702 : TTAATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTATgtcaaattaat : 1390758 79 : eValThrTrpThrAsnTyr{Gl} >>>> Target Intron 1 >>>> {y}L : 86 .::: ||||||!!. !{||} 884 bp {|}: eIlePheTrpThrLysArg{Gl}++ ++{y}I 1390759 : tattttctggaCTAAACGT{GG}gt.........................ag{a}a : 1391666 87 : euPheCysAspIleLeuSerThrMetGluGluAspCysGlnLysTyrAlaIle<-> : 104 ::||| ::::::||| ! !|||....!.|||!! ...!!.! !:!! ! lePheGluAsnMetLeuValGlyMetSerAsnAspTrpSerAsnSerSerSerThr 1391667 : tattcgaaaatatgtTAGTGGGAATGTCTAACGATTGGAGTAATTCTTCATCAACG : 1391720 105 : <->MetAspIleAsnAsnLeuIleThrLysThrGlyLeuPheSerPheTyrMetTh : 121 .!.||||||||| !:!!|||!:!|||.!!! !||| :!!!:! ! :! LysPheAspIleAsnAlaMetIleSerLysAlaGluLeu---AlaTyrArgTyrSe 1391721 : AAATTTGACATAAACGCCATGATAAGTAAAGCTGAACTT---GCGTATCGTTATTC : 1391774 122 : rSerMetIleMetSerSerTyrLeuValSerAlaValCysTyrLeuAlaGlyAlaI : 140 !!.!:!:|||||||||!!!||| !:!!:!!!.! !!..!||| !::!! ! !. rLysValIleMetSerThrTyrAlaIleAlaValPheAlaTyrThrSerValPheP 1391775 : GAAGGTAATTATGAGCACATATGCTATTGCCGTTTTCGCTTATACCAGCGTGTTTT : 1391831 141 : leAlaPhe<-><-><-><-><->GlnGlyThrAsnAspSerMetSerArgGluLeu : 153 !!! !||| .!.||| ! !!|||! !! !|||||||||||| heGluPheMetArgHisAspAsnAspGlyGluTyrAspLeuLysSerArgGluLeu 1391832 : TCGAGTTTATGCGTCACGACAACGACGGCGAATATGATTTAAAGTCTCGAGAACTT : 1391885 154 : LeuLeuLysMetAspLeuProPheGluThrSerGluSerProAsnTyrGluLeuVa : 172 |||:!!||||||||||||||||||! ! !! !:!!!!!|||!..|||:!!! !|| LeuMetLysMetAspLeuProPheAlaTyrTyrLysThrProThrTyrGlnTrpVa 1391886 : TTGATGAAAATGGACCTCCCGTTTGCGTATTACAAAACACCGACGTATCAATGGGT : 1391942 173 : lValThrThrGlnPheIleIleHisPheSerAlaAlaLeuAlaPheGlyThrPheT : 191 | !!..!..!||||||:!! ! !!.! ! !|||! !|||.!!|||! !!!. lPheValValGlnPheLeuGlnLeuLeuIleAsnAlaSerAlaIleGlyMetLeuA 1391943 : ATTTGTTGTACAATTTCTTCAGCTGTTGATAAATGCATCTGCTATTGGTATGTTAG : 1391999 192 : hrAlaLeuLeuPheMetMetIle : 198 !||||||:!!.!!! !:!!:!! spAlaLeuIleIleThrLeuVal 1392000 : ATGCTTTGATAATTACGTTGGTA : 1392022 vulgar: gi|815909105|ref|XP_012240198.1| 3 198 . KQ414716.1 1390535 1392022 + 248 M 81 243 S 0 2 5 0 2 I 0 880 3 0 2 S 1 1 M 18 54 G 0 6 M 12 36 G 1 0 M 26 78 G 0 15 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390536 1392022 248 + . gene_id 6 ; sequence gi|815909105|ref|XP_012240198.1| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1390536 1390780 . + . KQ414716.1 exonerate:protein2genome:local exon 1390536 1390780 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1390781 1390782 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1390781 1391664 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1391663 1391664 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1391665 1392022 . + . KQ414716.1 exonerate:protein2genome:local exon 1391665 1392022 . + . insertions 21 ; deletions 1 KQ414716.1 exonerate:protein2genome:local similarity 1390536 1392022 248 + . alignment_id 6 ; Query gi|815909105|ref|XP_012240198.1| ; Align 1390536 4 243 ; Align 1391666 86 54 ; Align 1391726 104 36 ; Align 1391762 117 78 ; Align 1391855 143 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909105|ref|XP_012240198.1| PREDICTED: odorant receptor 4-like isoform X1 [Bombus impatiens] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 308 -> 375 Target range: 1387619 -> 1387955 309 : SerGlnLeuIleGlyAspThrAlaTyrAsnMetLeuTrpTyrAspLeuArgProAs : 327 |||:!!! !||| !.!.:!:...||||||...|||||||||||||||!:!|||.. SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 328 : nLysSerArgLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrLeuT : 346 .:!!:!!|||::::::::: :::||||||||||||||||||! !!!.! !|||| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 347 : hrPheGlyLysPheSerAsnLeuSerLeuGluSerPheThrGly >>>> Targe : 361 || ||||||||| !||||||||||||! :!!|||.!!... hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt.......... : 1387778 362 : t Intron 1 >>>> IleMetLysValSerAlaSerTyrMetSerValLeuLeu : 373 135 bp ::::!:|||!.!||||||||||||:!:|||||||||! ! ++MetLeuLysAlaSerAlaSerTyrValSerValLeuHis 1387779 : ...............agatgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTTGCAT : 1387947 374 : AlaLeu : 375 |||:!! AlaMet 1387948 : GCAATG : 1387955 vulgar: gi|815909105|ref|XP_012240198.1| 308 375 . KQ414716.1 1387619 1387955 + 170 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387955 170 + . gene_id 7 ; sequence gi|815909105|ref|XP_012240198.1| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387955 170 + . alignment_id 7 ; Query gi|815909105|ref|XP_012240198.1| ; Align 1387620 309 156 ; Align 1387911 361 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 166 Query range: 95 -> 181 Target range: 38024 -> 37769 96 : LeuIleAlaLeuValIlePheLeuSerLeuProLeuTyrAsnProValLeuAspIleIle : 115 |||.!!..!! !||||||||| !|||:!! !!:!! !! !|||||||||:!!||| LeuPheCysTyrValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIle 38024 : CTGTTTTGCTACGTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATT : 37967 116 : IleProLeuAsnGluThrArgGlnArgAsnAsnValPheGlnValHisTyrGlyValLeu : 135 !||| !||||||:!!||| ! !:!! !:!!!:!! !.!:!!|||||| ||| SerProLysAsnGluSerArgGlyValAspPheIleTyrProAlaTyrTyrGly---Leu 37966 : TCACCGAAAAACGAATCGCGTGGGGTTGACTTCATTTATCCTGCATACTACGGT---CTC : 37910 136 : AspAsnGluGluHisPheTyrIleValTyrValHisLeuSerLeuCysAlaIleIleIle : 155 |||.!.|||||||||!:!||||||:!! ! !|||:!! !! ! !! !:!!:!: AspGluGluGluHisTyrTyrIleLeuMetGlyHisMetLeuCysValIleThrValVal 37909 : GACGAGGAGGAACATTATTACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTG : 37850 156 : ValValThrIleIleSerValAspSerLeuTyrIleThrIleIleTyrHisAlaCysGly : 175 !! !!..! !|||||| !|||!!!:!!|||!!:!:!|||:!! ! |||||||||||| PhePheValTyrIleSerCysAspThrIleTyrMetSerIleValGlnHisAlaCysGly 37849 : TTTTTCGTGTACATCTCCTGTGACACGATCTACATGAGCATCGTTCAACACGCGTGCGGA : 37790 176 : LeuPheAlaValCysGly : 181 |||.!. !|||! !||| LeuLeuAsnValSerGly 37789 : TTACTGAACGTCTCTGGG : 37770 vulgar: gi|815897156|ref|XP_012249339.1| 95 181 . KQ414772.1 38024 37769 - 166 M 38 114 G 1 0 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37770 38024 166 - . gene_id 1 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37770 38024 . - . KQ414772.1 exonerate:protein2genome:local exon 37770 38024 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 37770 38024 166 - . alignment_id 1 ; Query gi|815897156|ref|XP_012249339.1| ; Align 38025 96 114 ; Align 37911 135 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 147 Query range: 94 -> 179 Target range: 20577 -> 20325 95 : LeuLeuIleAlaLeuValIlePheLeuSerLeuProLeuTyrAsnProValLeuAspIle : 114 |||!!!:!! !! !!.!|||||||||!!!:!!|||!!! !:!!||||||||| LeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAspIle 20577 : TTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATT : 20520 115 : IleIleProLeuAsnGluThrArgGlnArgAsnAsnValPheGlnValHisTyrGlyVal : 134 ! |||||||||:!!||||||:!!||| !|||!:!! !!.!:!!||| !! TyrAlaProLeuAsnLysThrArgLysArgValPheValTyrProAlaTyrTyrTrp--- 20519 : TACGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGG--- : 20460 135 : LeuAspAsnGluGluHisPheTyrIleValTyrValHisLeuSerLeuCysAlaIleIle : 154 :!!||| !|||:!!:!!!:! |||:!! :!!|||:!!! !!!! !.!|||!!: MetAspProGluGlnTyrTyrMetIleMetIleIleHisIleMetPheValValIleMet 20459 : ATGGATCCTGAGCAATACTACATGATAATGATAATACACATAATGTTCGTGGTGATCATG : 20403 155 : IleValValThrIleIleSerValAspSerLeuTyrIleThrIleIleTyrHisAlaCys : 174 :!! !|||! !.!! !:!! !|||! ! !|||:!: ! !:!: ! ||||||||| ValCysValIlePheCysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCys 20402 : GTCTGTGTCATATTCTGTGCTTGCGACATGAACTACGTGTACGCTGTGCAGCACGCATGC : 20343 175 : GlyLeuPheAlaVal : 179 ||||||!!.|||||| GlyLeuLeuAlaVal 20342 : GGCTTATTGGCTGTC : 20326 vulgar: gi|815897156|ref|XP_012249339.1| 94 179 . KQ414772.1 20577 20325 - 147 M 39 117 G 1 0 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20577 147 - . gene_id 2 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20577 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20577 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 20326 20577 147 - . alignment_id 2 ; Query gi|815897156|ref|XP_012249339.1| ; Align 20578 95 117 ; Align 20461 135 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 95 -> 185 Target range: 14148 -> 13881 96 : LeuIleAlaLeuValIlePheLeuSerLeuProLeuTyrAsnProValLeuAspIleIle : 115 :!!:!!..!:!!:!!:!:|||:!!!!! !|||:!! ! !:!!|||||||||:!! IleValCysValIleLeuPheValThrThrProValThrProHisIleLeuAspIleLeu 14148 : ATCGTTTGTGTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATTTTGGACATTTTA : 14091 116 : IleProLeuAsnGluThrArgGlnArgAsnAsnValPheGlnValHisTyrGlyValLeu : 135 :!!||| !||||||:!!|||.!. ! !!:!!!:!! !!.!:!!||| !..! ! LeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAsp 14090 : CTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGAC : 14031 136 : AspAsnGluGluHisPheTyrIleValTyrValHisLeuSerLeuCysAlaIleIleIle : 155 !!::!!:!! ! !! ! ||||||:!! ..!|||:!!:!!! ! !:!!:!::!: GluHisLysTyrAspValTyrIleIle---ThrHisMetAlaSerValIleLeuValVal 14030 : GAGCATAAGTACGACGTGTACATAATT---ACGCACATGGCGTCCGTGATCCTTGTGGTG : 13974 156 : ValValThrIleIleSerValAspSerLeuTyrIleThrIleIleTyrHisAlaCysGly : 175 !! !..! !:!!:!! !|||!!! !|||||| !:!!:!: ! |||!.!|||||| PheTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGly 13973 : TTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGA : 13914 176 : LeuPheAlaValCysGlySerGlnIleGln : 185 |||!!.||||||! !||| :::|||::: LeuLeuAlaValSerGly***LysIleArg 13913 : TTGTTGGCCGTGTCCGGgtaaaaaattcga : 13882 vulgar: gi|815897156|ref|XP_012249339.1| 95 185 . KQ414772.1 14148 13881 - 135 M 49 147 G 1 0 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13882 14148 135 - . gene_id 3 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13882 14148 . - . KQ414772.1 exonerate:protein2genome:local exon 13882 14148 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 13882 14148 135 - . alignment_id 3 ; Query gi|815897156|ref|XP_012249339.1| ; Align 14149 96 147 ; Align 14002 146 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 131 -> 181 Target range: 17952 -> 17802 132 : TyrGlyValLeuAspAsnGluGluHisPheTyrIleValTyrValHisLeuSerLeuCys : 151 ||| ! !!:!!|||.!.! !|||:!!!:!||| !:!! :!!||| !!!!! ! TyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThr 17952 : TATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACA : 17895 152 : AlaIleIleIleValValThrIleIleSerValAspSerLeuTyrIleThrIleIleTyr : 171 !:!:|||:!!||||||..! ! !:!! !|||!!! !|||!!:..!:!::!: ! IleLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGln 17894 : ATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAA : 17835 172 : HisAlaCysGlyLeuPheAlaValCysGly : 181 |||.!!||||||||||||||||||..!||| HisThrCysGlyLeuPheAlaValAlaGly 17834 : CACACTTGCGGACTGTTCGCCGTGGCCGGG : 17803 vulgar: gi|815897156|ref|XP_012249339.1| 131 181 . KQ414772.1 17952 17802 - 108 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17803 17952 108 - . gene_id 4 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17803 17952 . - . KQ414772.1 exonerate:protein2genome:local exon 17803 17952 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17803 17952 108 - . alignment_id 4 ; Query gi|815897156|ref|XP_012249339.1| ; Align 17953 132 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 340 -> 401 Target range: 1345564 -> 1345747 341 : GlySerGluIleAlaThrAlaLeuTyrAspIleGluTrpTyrAsnLeuProGlyAr : 359 .!!||||||!!: ! !|||! !||| !! !.!.||||||:!!||||||! !!: SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 360 : gLysAlaArgAspIleValLeuValLeuAlaIleSerLysTyrProLeuLysLeuT : 378 ! ! .!!|||...:!!:!!!!! !:!!||| !|||:!! ! |||! ! ! |||| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 379 : hrAlaGlyLysIleLeuValLeuSerMetAsnThrPheGlyValValArgValGlu : 396 |||||||||||.!!! !|||!!!|||:!:.!.|||||||||:!!|||!!!:!!... hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIleValSerLeuSer 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCGTGAGTTTATCT : 1345730 397 : IleLeuAlaSerLeu : 401 .!! !:::...||| PheAsnSerGluLeu 1345731 : TTTAATagtgaatta : 1345747 vulgar: gi|815911888|ref|XP_012241385.1| 340 401 . KQ414782.1 1345564 1345747 + 119 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345747 119 + . gene_id 1 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345747 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345747 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345747 119 + . alignment_id 1 ; Query gi|815911888|ref|XP_012241385.1| ; Align 1345565 341 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 288 -> 341 Target range: 1345564 -> 1345723 289 : SerValGluLeuSerAsnLysIleTyrAspSerAspTrpTyrLysIleProThrLy : 307 ||| !|||:!!..!.!. !||| !|||:!!|||||| ! :!!||| !|| SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 308 : sAlaGlnLysValPheTyrLeuMetGlnValArgSerAsnLysProCysIleLeuT : 326 | ! !::! !!!. !!! !.!||||||.!.||||||! !|||| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 327 : hrAlaAlaGlyMetTyrGluMetAsnIleGluSerPheGlyIleVal : 341 |||||!.! !.!.|||! !.!.::::!!|||!!!|||||||||||| hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIleVal 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCGTG : 1345723 vulgar: gi|815897156|ref|XP_012249339.1| 288 341 . KQ414782.1 1345564 1345723 + 102 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345723 102 + . gene_id 1 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345723 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345723 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345723 102 + . alignment_id 1 ; Query gi|815897156|ref|XP_012249339.1| ; Align 1345565 289 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 175 Query range: 94 -> 196 Target range: 26246 -> 25940 95 : LeuLeuIleAlaLeuValIlePheLeuSerLeuProLeuTyrAsnProValLeuAspIle : 114 :!!! !:!!..! !!.!:!!|||:!!!!!||||||!!! :::|||:!!||||||||| IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIle 26246 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATC : 26189 115 : IleIleProLeuAsnGluThrArgGlnArgAsnAsnValPheGlnValHisTyrGlyVal : 134 :!!!!:|||||||||||||||||| !||| !|||!:!! !!.!:!!||| !||| LeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal 26188 : CTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC : 26129 135 : LeuAspAsnGluGluHisPheTyrIleValTyrValHisLeuSerLeuCysAlaIleIle : 154 |||.!.!!::!!:!! !|||:!::!! ! !|||:!!! !||| !.!:!!!!: ---AspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMet 26128 : ---GACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATG : 26072 155 : IleValValThrIleIleSerValAspSerLeuTyrIleThrIleIleTyrHisAlaCys : 174 :!!:!! !..!.!! !:!! !|||:!! !|||:!: ! !:!: ! ||||||||| LeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCys 26071 : CTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGC : 26012 175 : GlyLeuPheAlaValCysGlySerGlnIleGln<->LysThrAlaGluAsnAsnPheVal : 193 ||||||!!.|||:!!...|||! ! !:!!||| :!! ! !||||||..!|||:!! GlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGluAsnGlyPheLeu 26011 : GGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAATGGTTTTCTT : 25952 194 : GluLysAsn : 196 ! !:!||| TyrArgAsn 25951 : TATAGAAAT : 25941 vulgar: gi|815897156|ref|XP_012249339.1| 94 196 . LHQN01017803.1 26246 25940 - 175 M 40 120 G 1 0 M 50 150 G 0 3 M 11 33 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25941 26246 175 - . gene_id 1 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25941 26246 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25941 26246 . - . insertions 3 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25941 26246 175 - . alignment_id 1 ; Query gi|815897156|ref|XP_012249339.1| ; Align 26247 95 120 ; Align 26127 136 150 ; Align 25974 186 33 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 138 Query range: 95 -> 185 Target range: 14185 -> 13918 96 : LeuIleAlaLeuValIlePheLeuSerLeuProLeuTyrAsnProValLeuAspIleIle : 115 :!!:!!..!:!!:!!:!:|||:!!||| !|||:!! ! !:!!|||||||||:!! IleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeu 14185 : ATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTA : 14128 116 : IleProLeuAsnGluThrArgGlnArgAsnAsnValPheGlnValHisTyrGlyValLeu : 135 :!!||| !||||||:!!|||.!. ! !!:!!!:!! !!.!:!!||| !..! ! LeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAsp 14127 : CTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTATCCGGCCTATTATTTCACCGAC : 14068 136 : AspAsnGluGluHisPheTyrIleValTyrValHisLeuSerLeuCysAlaIleIleIle : 155 !!::!!:!! ! !! ! ||||||:!! ..!|||:!!:!!! ! !:!!:!::!: GluHisLysTyrAspValTyrIleIle---ThrHisMetAlaSerValIleLeuValVal 14067 : GAGCATAAGTACGACGTGTACATAATT---ACGCACATGGCGTCCGTGATCCTTGTGGTG : 14011 156 : ValValThrIleIleSerValAspSerLeuTyrIleThrIleIleTyrHisAlaCysGly : 175 !! !..! !:!!:!! !|||!!! !|||||| !:!!:!: ! |||!.!|||||| PheTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGly 14010 : TTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGA : 13951 176 : LeuPheAlaValCysGlySerGlnIleGln : 185 |||!!.||||||! !||| :::|||::: LeuLeuAlaValSerGly***LysIleArg 13950 : TTGTTGGCCGTGTCCGGgtaaaaaattcga : 13919 vulgar: gi|815897156|ref|XP_012249339.1| 95 185 . LHQN01017803.1 14185 13918 - 138 M 49 147 G 1 0 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13919 14185 138 - . gene_id 2 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13919 14185 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13919 14185 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 13919 14185 138 - . alignment_id 2 ; Query gi|815897156|ref|XP_012249339.1| ; Align 14186 96 147 ; Align 14039 146 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 131 -> 181 Target range: 18336 -> 18186 132 : TyrGlyValLeuAspAsnGluGluHisPheTyrIleValTyrValHisLeuSerLeuCys : 151 ||| ! !!:!!|||.!.! !|||:!!!:!||| !:!! :!!||| !!!!! ! TyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThr 18336 : TATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACA : 18279 152 : AlaIleIleIleValValThrIleIleSerValAspSerLeuTyrIleThrIleIleTyr : 171 !:!:|||:!!||||||..! ! !:!! !|||!!! !|||!!:..!:!::!: ! IleLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGln 18278 : ATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAA : 18219 172 : HisAlaCysGlyLeuPheAlaValCysGly : 181 |||.!!||||||||||||||||||..!||| HisThrCysGlyLeuPheAlaValAlaGly 18218 : CACACTTGCGGACTGTTCGCCGTGGCCGGG : 18187 vulgar: gi|815897156|ref|XP_012249339.1| 131 181 . LHQN01017803.1 18336 18186 - 108 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18187 18336 108 - . gene_id 3 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18187 18336 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18187 18336 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18187 18336 108 - . alignment_id 3 ; Query gi|815897156|ref|XP_012249339.1| ; Align 18337 132 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815895919|ref|XP_003485159.2| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 1309 Query range: 0 -> 378 Target range: 4393650 -> 4395883 1 : MetTrpProIleGluGlnLysSerSerThrCysSerLysIlePheSerTyrIleAr : 19 ||||||||||||!!::!!|||||||||||| !!||||||:!!|||:!!|||.!!|| MetTrpProIleAspGluLysSerSerThrArgSerLysLeuPheAlaTyrPheAr 4393651 : ATGTGGCCTATCGACGAGAAAAGTTCAACGCGTAGCAAACTATTCGCATACTTCCG : 4393705 20 : gLeuThrPheThrLeuIleSerLeuIleSerValPheValProGluIleMetLeuI : 38 ||||! !||| !|||! :!!:!!! !|||||||||||||||||||||||| !| gLeuIlePheGlyLeuThrAlaIleSerSerValPheValProGluIleMetAlaI 4393706 : TCTGATATTCGGATTAACGGCAATCAGTAGTGTCTTCGTGCCAGAAATTATGGCGA : 4393762 39 : leAlaValAsnTrpGlyAsnIleGluIleLeuAla{G} >>>> Target Intr : 50 ||!.! !|||||||||:!!|||..!|||||||||{|} 311 bp leValTrpAsnTrpGlyAspIleArgIleLeuAla{G}+- 4393763 : TAGTGTGGAATTGGGGTGACATAAGAATCTTGGCA{G}gc................ : 4393801 51 : on 1 >>>> {ly}AlaGlySerIleValThrThrLeuGlyGlnThrLeuPheLy : 64 {||}!.!|||!!!:!!:!!||||||:!!|||||| |||||||| ++{ly}ValGlyCysValLeuThrThrValGlyGlnLeuLeuPheLy 4393802 : .........ag{GA}GTAGGATGCGTTTTAACAACAGTCGGACagttattattcaa : 4394151 65 : sMetPheTyrLeuIleAlaArgArgGluArgSerTyrMetLeuTyrTyrGluIleL : 83 ||||.!!||||||||||||||||||!!:!:!!!!|||! !|||! ! !!||||||: sMetIleTyrLeuIleAlaArgArgAspLysThrTyrLysLeuCysAsnGluIleA 4394152 : aatgATTTACCTAATAGCGAGAAGGGACAAAACGTACAAGCTTTGCAACGAAATAC : 4394208 84 : ysSerLeuTrpAspThrAlaAsnAspSerAsnGluIleGlnSerTyrIleGlnPhe : 101 ::..!|||||||||:!!:!!:!!||| !!!!.|||! !||||||||| !:!!.!! rgAspLeuTrpAspSerSerAspAspProLysGluArgGlnSerTyrGluGluLeu 4394209 : GTGATCTATGGGATTCATCCGATGATCCAAAAGAAAGACAGTCCTACGAAGAGCTC : 4394262 102 : AlaTyrTrpAlaArgIleCysThrIleValPheTyrSerSerCysValCysAsnVa : 120 |||:!!|||||||||! ! !||||||:!!|||||||||||||||:!!|||||||| AlaHisTrpAlaArgAsnLeuThrIleIlePheTyrSerSerCysMetCysAsnVa 4394263 : GCTCATTGGGCAAGAAACCTTACGATAATCTTTTACTCGTCCTGCATGTGCAACGT : 4394319 121 : lIleThrPheSerSerAlaAlaAlaValAspTyrPheArgPheAspTyrAsnAlaA : 139 |.!!||||||!!!! !||||||||| !!|||||||||! !.!!!!:|||!:!!.!! lPheThrPheThrIleAlaAlaAlaPheAspTyrPheThrIleGluTyrSerValS 4394320 : GTTCACATTCACGATTGCCGCAGCCTTCGATTATTTCACGATCGAATACAGCGTCA : 4394376 140 : snSerThrSerAsnSerArgHisLeuProPheIleVal{Tr} >>>> Target : 152 :!..!.!!..!!!.|||||||||||||||||| !|||{||} 18 erAspAlaAspLysSerArgHisLeuProPheGluVal{Tr}++ 4394377 : GCGATGCTGATAAAAGTCGACACTTGCCCTTCGAAGTC{TG}gt............ : 4394419 153 : Intron 2 >>>> {p}TyrGlyThrAspIleSerAlaSerProLysPheGluIl : 165 9 bp {|}||||||! !||||||!!! !!||||||:::|||||||| ++{p}TyrGlyIleAspIleThrProSerProArgPheGluIl 4394420 : .............ag{G}TATGGAATAGACATCACACCGTCTCCTCGCTTCGAGAT : 4394643 166 : eAlaPheIleCysGlnPheLeuSerAlaThrLeuSerIleThrSerIleAlaGlyL : 184 |||||||:!!||||||.!!:!!:!!:!!! !:!!!!! !.!!:!!|||:!!|||| eAlaPheLeuCysGlnIleValAlaSerMetIleCysAlaAlaAlaIleSerGlyL 4394644 : CGCTTTCCTTTGTCAAATCGTAGCATCTATGATCTGCGCAGCCGCGATCTCAGGCT : 4394700 185 : euAspCysSerPheMetThrThrMetLeuHisValSerAlaGlnPheLysLeuIle : 202 |||||...!!!||||||||||||!!:||||||||||||!.!||||||||||||||| euAspAlaThrPheMetThrThrIleLeuHisValSerGlyGlnPheLysLeuIle 4394701 : TGGACGCGACGTTTATGACCACGATTCTACACGTGTCTGGTCAATTCAAATTGATC : 4394754 203 : AsnThrTrpIleSerAsnIleGlyThrGluIleAsnCysAsnProAsnTyrThrGl : 221 |||! !|||||||||!!.||||||! !||||||||| !.!.|||:!!||| !!!: AsnArgTrpIleSerLysIleGlyIleGluIleAsnIleGluProAspTyrProAr 4394755 : AACAGATGGATCAGTAAGATTGGAATAGAGATAAATATCGAGCCCGATTATCCGCG : 4394811 222 : nLysIleLysValAspLeuThrArgCysIleArgHisHisGlnArgIleIle{Hi} : 239 !|||:!!|||!.!:!!|||! !!:!|||||||||||||||||||||!!:|||{:!} gLysLeuLysAlaAsnLeuIleLysCysIleArgHisHisGlnArgMetIle{As} 4394812 : AAAATTAAAAGCGAATCTGATCAAATGCATTCGCCATCACCAACGAATGATA{AA} : 4394865 240 : >>>> Target Intron 3 >>>> {s}ValValAsnGluValAsnAsnLeu : 247 131 bp {!}|||||||||!::|||||||||||| ++ ++{n}ValValAsnAspValAsnAsnLeu 4394866 : gt.........................ag{C}GTTGTGAACGacgtgaataattta : 4395020 248 : LeuThrProIleValPheLeuGlnIleLeuThrSerGlyIleGluValCysLeuSe : 266 ||||||||||||:!!|||:!!|||:!!||||||||||||||||||:!!|||||||| LeuThrProIleIlePheMetGlnLeuLeuThrSerGlyIleGluIleCysLeuSe 4395021 : ttaacaccCATCATTTTCATGCAACTTCTTACGAGCGGAATAGAGATTTGTTTGAG : 4395077 267 : rGlyTyrAlaIleLeuAspThrGlyLysAlaGluAlaAspLeuValLysPheIleS : 285 ||||!:!|||:!::!!|||!.!|||! !.! .!!||||||:!!||||||:!:| rGlyPheAlaValIleAspAsnGlyThrGly---ThrAspLeuLeuLysPheValS 4395078 : TGGATTCGCGGTGATCGATAACGGCACCGGT---ACCGATCTTCTCAAATTTGTGT : 4395131 286 : erTyrPheIleSerMetAlaValHisLeuLeuLeuTrpCysTrpProGlyGluIle : 303 |||||!!.! !||||||!.!|||!!.|||||||||||||||||||||||||||||| erTyrLeuThrSerMetGlyValGlnLeuLeuLeuTrpCysTrpProGlyGluIle 4395132 : CTTATTTAACCTCGATGGGGGTGCAACTTTTGCTATGGTGTTGGCCTGGTGAAATT : 4395185 304 : LeuValGlnGluSerGlnGluIleGlyHisAlaValTyrPheAsnValProTrpTy : 322 ||||||||||||||| !||||||||||||!.!||||||.!.|||:!!|||||||| LeuValGlnGluSerLeuGluIleGlyHisValValTyrLeuAsnIleProTrpTy 4395186 : CTCGTTCAAGAGAGTTTAGAAATAGGTCATGTAGTCTATCTAAATATACCATGGTA : 4395242 323 : rAspLeuProProIleTyrGlnArgHisLeuCysLeuMetIleValArgAlaGlnG : 341 |:!!||||||||||||||||||!:!!!.|||||||||||||||:!!|||||||||| rAsnLeuProProIleTyrGlnLysGlnLeuCysLeuMetIleIleArgAlaGlnG 4395243 : CAATTTACCACCGATTTATCAGAAACAACTTTGCCTGATGATCATTAGGGCCCAAC : 4395299 342 : lnTyrSerSerIleSerAlaLeuThrPheGlnThrLeuSerIleHisThrLeuThr : 359 |||||!!!||||||!!!||||||||||||||||||||||||||||||||||||||| lnTyrCysSerIleThrAlaLeuThrPheGlnThrLeuSerIleHisThrLeuThr 4395300 : AGTATTGCAGCATTACGGCATTAACGTTTCAAACGTTGTCTATTCACACGTTAACA : 4395353 360 : Ala >>>> Target Intron 4 >>>> ValPheAsnThrAlaAlaSerTyr : 368 ||| 471 bp |||||||||||||||||||||||| Ala++ ++ValPheAsnThrAlaAlaSerTyr 4395354 : GCCgt.........................agGTATTCAATACAGCTGCTTCGTAT : 4395851 369 : PheThrLeuLeuGlnGlnIleGlnGlnThr : 378 ||||||||||||!:!|||!!:||||||||| PheThrLeuLeuArgGlnMetGlnGlnThr 4395852 : TTTACTTTGCTGCGACAAATGCAGCAAACG : 4395883 vulgar: gi|815895919|ref|XP_003485159.2| 0 378 . KQ414784.1 4393650 4395883 + 1309 M 49 147 S 0 1 5 0 2 I 0 307 3 0 2 S 1 2 M 101 303 S 0 2 5 0 2 I 0 185 3 0 2 S 1 1 M 86 258 S 0 2 5 0 2 I 0 127 3 0 2 S 1 1 M 37 111 G 1 0 M 83 249 5 0 2 I 0 467 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4393651 4395883 1309 + . gene_id 1 ; sequence gi|815895919|ref|XP_003485159.2| ; gene_orientation + KQ414784.1 exonerate:protein2genome:local cds 4393651 4393798 . + . KQ414784.1 exonerate:protein2genome:local exon 4393651 4393798 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4393799 4393800 . + . intron_id 1 ; splice_site "GC" KQ414784.1 exonerate:protein2genome:local intron 4393799 4394109 . + . intron_id 1 KQ414784.1 exonerate:protein2genome:local splice3 4394108 4394109 . + . intron_id 0 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394110 4394416 . + . KQ414784.1 exonerate:protein2genome:local exon 4394110 4394416 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4394417 4394418 . + . intron_id 2 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4394417 4394605 . + . intron_id 2 KQ414784.1 exonerate:protein2genome:local splice3 4394604 4394605 . + . intron_id 1 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394606 4394866 . + . KQ414784.1 exonerate:protein2genome:local exon 4394606 4394866 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4394867 4394868 . + . intron_id 3 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4394867 4394997 . + . intron_id 3 KQ414784.1 exonerate:protein2genome:local splice3 4394996 4394997 . + . intron_id 2 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394998 4395358 . + . KQ414784.1 exonerate:protein2genome:local exon 4394998 4395358 . + . insertions 0 ; deletions 1 KQ414784.1 exonerate:protein2genome:local splice5 4395359 4395360 . + . intron_id 4 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4395359 4395829 . + . intron_id 4 KQ414784.1 exonerate:protein2genome:local splice3 4395828 4395829 . + . intron_id 3 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4395830 4395883 . + . KQ414784.1 exonerate:protein2genome:local exon 4395830 4395883 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local similarity 4393651 4395883 1309 + . alignment_id 1 ; Query gi|815895919|ref|XP_003485159.2| ; Align 4393651 1 147 ; Align 4394112 51 303 ; Align 4394607 153 258 ; Align 4394999 240 111 ; Align 4395110 278 249 ; Align 4395830 361 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897750|ref|XP_003485761.2| PREDICTED: odorant receptor Or1-like [Bombus impatiens] Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 249 -> 397 Target range: 4392927 -> 4395367 250 : ArgLysLysLeuAsnAsnArgPhe >>>> Target Intron 1 >>>> Leu : 258 |||||||||:::||||||||| 1999 bp ||| ArgLysLysIleAsnAsnArgGln++ -+Leu 4392928 : agaaaaaaaataaataatcgtcAAgt.........................ggttg : 4394951 259 : TyrArgTyrLysThrCysPheGlnPheTyrGlnArgLeuValCysMetThrAsnAs : 277 ::: ::: ...! !.!. ! !! !||| ! !!:!:..!||||| HisPhePhePheLeuThrIleLeuLeuLeuLeuLeuLeuTyrSerValValAsnAs 4394952 : cattttttttttttgacgataCTACTACTGCTACTTTTATACAGCGTTGTGAACGa : 4395008 278 : pTyrAsnLysLeuPheAsnLeuSerMetPheIleGlnMetLeuSerSerThrSerI : 296 | |||...|||...... !! !!!:|||!!:|||:!:|||!!!||| !! ! pValAsnAsnLeuLeuThrProIleIlePheMetGlnLeuLeuThrSerGlyIleG 4395009 : cgtgaataatttattaacaccCATCATTTTCATGCAACTTCTTACGAGCGGAATAG : 4395065 297 : leIleCysLeuSerGlyPheGlnAlaValValValGlyGlyGlnSerSerAspVal : 314 |||||||||||||||||| ||||||:!!! !..!||| .!!!!!|||:!! luIleCysLeuSerGlyPhe---AlaValIleAspAsnGlyThrGlyThrAspLeu 4395066 : AGATTTGTTTGAGTGGATTC---GCGGTGATCGATAACGGCACCGGTACCGATCTT : 4395116 315 : MetLysPheGlyIleTyrLeuSerAlaAlaIleSerGlnLeuLeuTyrIleCysTr : 333 :!:||||||! ! !||||||!!!:!! ! !||||||||| ||||| LeuLysPheValSerTyrLeuThrSerMetGlyValGlnLeuLeuLeuTrpCysTr 4395117 : CTCAAATTTGTGTCTTATTTAACCTCGATGGGGGTGCAACTTTTGCTATGGTGTTG : 4395173 334 : pIleGlyAsnGluLeuAsnTyrAlaSerTrpThrLeuAspArgSerGlnTrpLeuS : 352 | !|||.!. ||| ! ! ! !|||! !:!!! !!.! ! !::|||! pProGlyGluIleLeuValGlnGluSerLeuGluIleGlyHisValValTyrLeuA 4395174 : GCCTGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGTCATGTAGTCTATCTAA : 4395230 353 : erGlyTrpAsnAsnGluArgLeuThrAsnIleValLysMetPheThrLeuSerThr : 370 :! ! !!.!. !! ! !!! ! ! !|||....!! !|||! !! ! snIleProTrpTyrAsnLeuProProIleTyrGlnLysGlnLeuCysLeuMetIle 4395231 : ATATACCATGGTACAATTTACCACCGATTTATCAGAAACAACTTTGCCTGATGATC : 4395284 371 : MetPheThrArgArgSerIleThrLeuLysAlaSerValPheTyrValLeuSerLe : 389 !!: .!!!:!!:!! ! !!:!:!!! !|||! !..!||| ! ..!||||||:! IleArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPheGlnThrLeuSerIl 4395285 : ATTAGGGCCCAACAGTATTGCAGCATTACGGCATTAACGTTTCAAACGTTGTCTAT : 4395341 390 : uGluThrPheIleThrIleIleArg : 397 !.!.|||!!.! !.!!:!!! !||| eHisThrLeuThrAlaValSerArg 4395342 : TCACACGTTAACAGCCGTAAGTCGA : 4395367 vulgar: gi|815897750|ref|XP_003485761.2| 249 397 . KQ414784.1 4392927 4395367 + 136 M 8 24 5 0 2 I 0 1995 3 0 2 M 45 135 G 1 0 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4392928 4395367 136 + . gene_id 1 ; sequence gi|815897750|ref|XP_003485761.2| ; gene_orientation + KQ414784.1 exonerate:protein2genome:local cds 4392928 4392951 . + . KQ414784.1 exonerate:protein2genome:local exon 4392928 4392951 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4392952 4392953 . + . intron_id 1 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4392952 4394950 . + . intron_id 1 KQ414784.1 exonerate:protein2genome:local splice3 4394949 4394950 . + . intron_id 0 ; splice_site "gg" KQ414784.1 exonerate:protein2genome:local cds 4394951 4395367 . + . KQ414784.1 exonerate:protein2genome:local exon 4394951 4395367 . + . insertions 0 ; deletions 1 KQ414784.1 exonerate:protein2genome:local similarity 4392928 4395367 136 + . alignment_id 1 ; Query gi|815897750|ref|XP_003485761.2| ; Align 4392928 250 24 ; Align 4394951 258 135 ; Align 4395086 304 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909018|ref|XP_012240156.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 234 -> 316 Target range: 51843 -> 52346 235 : LeuGluAlaPheValPheSerTyrAlaGlyGluTyrLeuSerSerLysSerLeuSerIle : 254 :!!.!..!!|||:!! |||! ::::::...::: ::!|||:!!..!||| ValAsnThrPheIleAlaSerCysHis***LysPhePheThrPheGlnSerValGluIle 51844 : GTTAATACTTTTATTGCAAGTTgtcattaaaaattcttcacttttcaGAGCGTTGAAATA : 51901 255 : SerAlaSerAlaTyrGlySerSerTrpTyrLeuLeuGluProArgAsnArgArgValVal : 274 :!! !:!!||||||! !|||..!|||||| !|||...|||!:!||| !!:!:!!:!! AlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLysAsnAlaLysLeuLeu 51902 : GCTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTGCTA : 51961 275 : IleLeuLeuMetIleArgSerGlnArgArgLeuThrIleThrAlaGlyLysPheMetAsp : 294 :!!:!!:!!||| !|||:!!::! !! !||| !||||||||||||!:!||| ! LeuIleIleMetArgArgAlaArgLeuProLeuGlnIleThrAlaGlyArgPheAlaThr 51962 : CTAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCAGGTAGATTTGCTACT : 52021 295 : LeuSerMetPheGlyPheAlaSer >>>> Target Intron 1 >>>> IleLeuL : 305 !!!!!!:!!.!. !!:!:!!..! 251 bp ||||||| PheThrLeuMetLeuTyrSerGln++ ++IleLeuL 52022 : TTCACTCTGATGCTGTATTCACAGgt.........................agATTTTAA : 52305 306 : ysAlaSerAla<-><->SerTyrValSerValLeuTyrAla : 316 ||.!!|||!.! .!!||||||||||||||||||||| ysThrSerValGlyLysGlyTyrValSerValLeuTyrAla 52306 : AAACCTCGGTGGGAAAAGGTTATGTTTCTGTTCTATACGCA : 52346 vulgar: gi|815909018|ref|XP_012240156.1| 234 316 . KQ414804.1 51843 52346 + 132 M 68 204 5 0 2 I 0 247 3 0 2 M 6 18 G 0 6 M 8 24 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51844 52346 132 + . gene_id 1 ; sequence gi|815909018|ref|XP_012240156.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51844 52047 . + . KQ414804.1 exonerate:protein2genome:local exon 51844 52047 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 52048 52049 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 52048 52298 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 52297 52298 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 52299 52346 . + . KQ414804.1 exonerate:protein2genome:local exon 52299 52346 . + . insertions 6 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51844 52346 132 + . alignment_id 1 ; Query gi|815909018|ref|XP_012240156.1| ; Align 51844 235 204 ; Align 52299 303 18 ; Align 52323 309 24 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909018|ref|XP_012240156.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 249 -> 303 Target range: 34381 -> 34543 250 : LysSerLeuSerIleSerAlaSerAlaTyrGlySerSerTrpTyrLeuLeuGluProArg : 269 :!!||| !..!!!:||| !|||||||||! !|||!:!|||||| !:!!..!|||! ! GlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProPro 34382 : CAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCA : 34439 270 : AsnArgArgValValIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleThrAla : 289 .!. !!:! !:!!:!!!!!:!!||| !|||!!! |||! !||| !:!:|||||| GluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAla 34440 : GAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCA : 34499 290 : GlyLysPheMetAspLeuSerMetPheGlyPheAlaSerIle : 303 |||||||||! !!!!|||||| !|||::!!!!:!! GlyLysPheSerThrPheSerMetGluMetPheSerThrVal 34500 : GGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTGTA : 34543 vulgar: gi|815909018|ref|XP_012240156.1| 249 303 . KQ414804.1 34381 34543 + 103 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34382 34543 103 + . gene_id 2 ; sequence gi|815909018|ref|XP_012240156.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 34382 34543 . + . KQ414804.1 exonerate:protein2genome:local exon 34382 34543 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34382 34543 103 + . alignment_id 2 ; Query gi|815909018|ref|XP_012240156.1| ; Align 34382 250 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 309 -> 393 Target range: 33837 -> 34543 310 : SerValAlaIleSerThrTyrIleIleLeuLeuThrSerPheThrPheAsnIleLeuIle : 329 !:!||| !:!: ! !!:!:!::!:!!!:!! !! !.!! ! ! :!!|||! !||| AsnValGlnLeuLeuPhePheValLeuPheValCysPheIleLeuValHisIleTyrIle 33838 : AACGTGCAATTGCTTTTCTTCGTGCTGTTCGTATGCTTCATCCTTGTACACATCTACATT : 33895 330 : TyrCysTyrValGlyGluLeuLeuLeuGlyGln >>>> Target Intron 1 >>>> : 341 |||||||||:!!||||||:!!|||||| !!!. 454 bp TyrCysTyrIleGlyGluMetLeuLeuThrHis+- 33896 : TATTGTTACATAGGAGAGATGCTACTCACACATgc......................... : 33933 342 : GlySerGluIleAlaThrAlaLeuTyrAspIleGluTrpTyrAsnLeuProGlyArgL : 360 .!!!!!|||!!:::!!.!:!! !|||!!: !.!.|||||||||:!! !! !! !: ++SerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProProG 33934 : agAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCAG : 34442 361 : ysAlaArgAspIleValLeuValLeuAlaIleSerLysTyrProLeuLysLeuThrAlaG : 380 !!|||!:! !:!!:!!!!!:!!:!! !! !!!! !|||||| |||||||||| luAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAlaG 34443 : AAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCAG : 34502 381 : lyLysIleLeuValLeuSerMetAsnThrPheGlyValVal : 393 |||||.!! !..!!!!||||||.!.! !|||.!!..!||| lyLysPheSerThrPheSerMetGluMetPheSerThrVal 34503 : GAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTGTA : 34543 vulgar: gi|815911888|ref|XP_012241385.1| 309 393 . KQ414804.1 33837 34543 + 123 M 31 93 5 0 2 I 0 450 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33838 34543 123 + . gene_id 1 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33838 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33838 33930 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 1 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34543 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34543 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33838 34543 123 + . alignment_id 1 ; Query gi|815911888|ref|XP_012241385.1| ; Align 33838 310 93 ; Align 34385 341 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909105|ref|XP_012240198.1| PREDICTED: odorant receptor 4-like isoform X1 [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 123 -> 208 Target range: 36677 -> 36932 124 : IleMetSerSerTyrLeuValSerAlaValCysTyrLeuAlaGlyAlaIleAlaPheGln : 143 |||:!!!!!! ! !:!!|||! !||| !!! ! ||| ! ! !! !::!.!.||| IleLeuThrTyrValMetValLeuAlaPheLeuSerLeuGlnIleTrpSerSerMetGln 36678 : ATCCTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGCAGCATGCAA : 36735 144 : GlyThrAsnAspSerMetSerArgGluLeuLeuLeuLysMetAspLeuProPheGluThr : 163 ..!|||:::!!:! !! ! !!! !||||||:!! ! !!!|||!:!!!:||| AsnThrSerGluPheAsnValGlyGlyLeuLeuIleProAlaThrPheProTyrAspThr 36736 : AACACCTCGGAGTTCAACGTAGGAGGACTACTTATCCCGGCCACATTTCCATACGACACG : 36795 164 : SerGluSerProAsnTyrGluLeuValValThrThrGlnPheIleIleHisPheSerAla : 183 !:!:!!|||||||||||||||:!!..! ! ! !||||||:!: ! ! !::! AsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrValLeuSer 36796 : AATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGC : 36855 184 : AlaLeuAlaPheGlyThrPheThrAlaLeuLeuPheMetMetIleLeuHisLeuGlyCys : 203 |||:!!..!!:!..! !||| !.!!!!!:!! !:!::!::!:||||||:!! !! !! AlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHisIleCysGly 36856 : GCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGC : 36915 204 : GlnIleAspIleMet : 208 |||:!! !:!!:!: GlnLeuThrValLeu 36916 : CAATTAACTGTTCTC : 36932 vulgar: gi|815909105|ref|XP_012240198.1| 123 208 . KQ414804.1 36677 36932 + 100 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36678 36932 100 + . gene_id 1 ; sequence gi|815909105|ref|XP_012240198.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36678 36932 . + . KQ414804.1 exonerate:protein2genome:local exon 36678 36932 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36678 36932 100 + . alignment_id 1 ; Query gi|815909105|ref|XP_012240198.1| ; Align 36678 124 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 97 -> 181 Target range: 485683 -> 485932 98 : AlaLeuValIlePheLeuSerLeuProLeuTyrAsnProValLeuAspIleIleIleP : 117 :!!|||:!!:!:.!.:!! ! ! !!!! !!||| !:!!|||||||||:!:|||| SerLeuLeuValLeuIleLeuGlyIlePheAsnAsnSerIleLeuAspIleLeuIleP 485684 : TCGTTACTTGTGCTGATTCTTGGTATATTTAACAACAGTATTCTGGACATTTTGATTC : 485741 118 : roLeuAsnGluThrArgGlnArgAsnAsnValPheGlnValHisTyrGlyValLeuAs : 136 |||||||| ! ||||||! !|||!..! ! !.!..!. !.!.:!! !||| || roLeuAsnTyrThrArgProArgThrIleProIleAsnSerGluHisPheVal---As 485742 : CTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACTCGGAACATTTTGTC---GA : 485795 137 : pAsnGluGluHisPheTyrIleValTyrValHisLeuSerLeuCysAlaIleIleIle : 155 |.!.:!!:!!:!!|||||| !:!! !.!|||:!! !|||! !!.!|||||| ! pGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLeuPheValIleIleGly 485796 : TCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCTCTTCGTCATTATTGGC : 485852 156 : ValValThrIleIleSerValAspSerLeuTyrIleThrIleIleTyrHisAlaCysG : 175 !.!:!!..!:!!:!!|||...::: ||| :::.!!|||||| ! |||.!!|||| AlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIleIleGlnHisThrCysG 485853 : GCGATAGTATTACTCAGCaccgaaatattaattatggCGATAATACAGCACACCTGTG : 485912 176 : lyLeuPheAlaValCysGly : 181 |||||!:!.!!:!! !||| lyLeuTyrThrIleValGly 485913 : GTTTGTATACAATCGTTGGG : 485932 vulgar: gi|815897156|ref|XP_012249339.1| 97 181 . KQ414815.1 485683 485932 + 130 M 37 111 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485684 485932 130 + . gene_id 1 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485684 485932 . + . KQ414815.1 exonerate:protein2genome:local exon 485684 485932 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 485684 485932 130 + . alignment_id 1 ; Query gi|815897156|ref|XP_012249339.1| ; Align 485684 98 111 ; Align 485795 136 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 99 -> 177 Target range: 457174 -> 457405 100 : ValIlePheLeuSerLeuProLeuTyrAsnProValLeuAspIleIleIleProLeuA : 119 :!!:!!.!! !!!!|||! !|||!:! !:!!|||||||||:!::!!||||||| LeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuA 457175 : CTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGA : 457232 120 : snGluThrArgGlnArgAsnAsnValPheGlnValHisTyrGlyValLeuAspAsnGl : 138 |||||:!!|||! !!.!. !.!! !!.!.!.||| !||| |||! :! snGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheVal---AspMetLy 457233 : ACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTC---GACATGAA : 457286 139 : uGluHisPheTyrIleValTyrValHisLeuSerLeuCysAlaIleIleIleValVal : 157 !:!!:!!.!.:!! !:!! !!.!|||:!!! ! !||| !:!:||| !.!..! sLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThr 457287 : AAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACC : 457343 158 : ThrIleIleSerValAspSerLeuTyrIleThrIleIleTyrHisAlaCysGlyLeuP : 177 |||:!!! !:!! !!!:|||||| !||||||! !:!! |||!.!|||||||||| ThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuP 457344 : ACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGT : 457403 178 : he : 177 || he 457404 : TC : 457405 vulgar: gi|815897156|ref|XP_012249339.1| 99 177 . KQ414815.1 457174 457405 + 124 M 35 105 G 1 0 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457175 457405 124 + . gene_id 2 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457175 457405 . + . KQ414815.1 exonerate:protein2genome:local exon 457175 457405 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457175 457405 124 + . alignment_id 2 ; Query gi|815897156|ref|XP_012249339.1| ; Align 457175 100 105 ; Align 457280 136 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 97 -> 179 Target range: 464594 -> 464840 98 : AlaLeuValIlePheLeuSerLeuProLeuTyrAsnProValLeuAspIleIleIleP : 117 !.!:!!:!!.!!.!!! !! !||| !:!!! !:!!||||||:!::!! | ValIleLeuPheIleCysLeuLeuGluValLeuProAspIleLeuAspValValAlaP 464595 : GTTATACTGTTCATCTGTTTACTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGC : 464652 118 : roLeuAsnGluThrArgGlnArgAsnAsnValPheGlnValHisTyrGlyValLeuAs : 136 |||||||||||:!!|||...!.!.!. !!:!!.!! !.!.!.!:! !:!! !|| roLeuAsnGluSerArgSerHisGlnTyrLeuIleThrAlaGluPhePheIleThrAs 464653 : CCCTCAATGAATCTCGTTCTCATCAATACTTAATTACCGCGGAATTTTTCATCACTGA : 464709 137 : pAsnGluGluHisPheTyrIleValTyrValHisLeuSerLeuCysAlaIleIleIle : 155 |!:!..! !:!!!:! !:!!..!! !||| ! !..!:!! ! !|||!!: ! pSerSerProAsnTyrIleValThrCysValGlyThrAspIleThrLeuIleMetGly 464710 : TAGTTCGCCGAATTATATCGTAACTTGTGTTGGTACGGATATTACTCTTATCATGGGA : 464766 156 : ValValThrIleIleSerValAspSerLeuTyrIleThrIleIleTyrHisAlaCysG : 175 |||..!|||||||||:!! !!!:!!!!!! !.!! !:!::!: ! ||| !|||! ValThrThrIleIleAlaSerGluThrPheThrPheLeuLeuLeuGlnHisIleCysA 464767 : GTCACGACAATAATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCG : 464826 176 : lyLeuPheAlaVal : 179 .!:!!||| !:!! laMetPheLysIle 464827 : CAATGTTCAAAATC : 464840 vulgar: gi|815897156|ref|XP_012249339.1| 97 179 . KQ414815.1 464594 464840 + 103 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464595 464840 103 + . gene_id 3 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464595 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464595 464840 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464595 464840 103 + . alignment_id 3 ; Query gi|815897156|ref|XP_012249339.1| ; Align 464595 98 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815903135|ref|XP_012237574.1| PREDICTED: odorant receptor 67c-like [Bombus impatiens] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 214 Query range: 95 -> 257 Target range: 440006 -> 440913 96 : TyrIlePheAspAsnLeuArgLysThrAspThrThrLeuLysAspGluLeuGluValG : 115 !:!||||||!!: !:!!!:!! ! !! !||||||:!!|||..! !|||:!!: PheIlePheGluCysIleGlnThrAspValTyrThrLeuGlnAspSerAsnGluMetL 440007 : TTTATCTTTGAGTGTATACAGACAGATGTATATACGCTACAAGATTCGAACGAGATGA : 440064 116 : lnIleLeuMetLysTyrValAspTyrAlaThrTyrIleIleSerIlePheLeu{C} : 133 !!||||||! !||||||:!!||| !!:!!!:! ||||||:::|||||||||{!} ysIleLeuThrLysTyrIleAspAspSerSerArgIleIleThrIlePheLeu{T}++ 440065 : AGATACTAACGAAATATATCGATGATTCAAGTCGAATaatcacaattttccta{t}gt : 440119 134 : >>>> Target Intron 1 >>>> {ys}LeuCysCysSerTrpThrIleLeuGly : 142 327 bp { !} !..!! !! ! !!! !! !:!! ! ++{yr}AlaAlaTyrPheGlyIleThrIleThr 440120 : .........................ag{AT}GCGGCTTACTTTGGGATCACAATTACC : 440472 143 : AlaLeuTyrValPheThrProIleThrLeuAspLeuLeuLeuProLeuAsnGluSerA : 162 !.! ! :!!!!. !|||:!!:!!:!!|||||||||:!!|||||||||:!!|||| ValThrThrLeuLeuTyrProValSerMetAspLeuLeuValProLeuAsnLysSerA 440473 : GTGACGACATTATTATACCCAGTATCAATGGATCTGTTAGTACCATTGAACAAATCCA : 440532 163 : rgGlyArgTyrPheSerTyrLeuThrMetPheSerHisAspArgIleGluTyrValAs : 181 || !||||||.!!.!.|||... :::... !:!!!:!|||:!!|||:!!|| rgProArgTyrLeuGlyTyrPhePheIleLeuProSerAsnGlnIleGlnTyrIleAs 440533 : GACCTCGTTATCTTGGctacttttttattcttccctCTAATCAAATACAGTATATTGA : 440589 182 : pMetValCysValAsnIleLeuValValTyrThrIleGlyLeuPheCysLeuAlaGly : 200 |.!.:!! !! !! !:!!||| ! !:!:||||||!!. !:!!.!! !! pPheMetThrPheTyrGlyThrLeuValProPheValGlyLeuLeuThrValThrCys 440590 : TTTTATGACATTTTATGGGACATTAGTTCCCTTTGTGGGATTATTAACTGTAACATGC : 440646 201 : ThrGluLeuMetLeuAlaValPheAlaHisTyrMetCysGlyLeuPheGluIleThr{ : 220 ||||||! !:!:|||::!:!!.!!||| |||:!! !!.!!|||!:!:!!||||||{ ThrGluSerLeuLeuSerIleIleAlaMetTyrValSerSerLeuTyrLysIleThr{ 440647 : ACGGAATCGCTTCTTAGTATTATCGCAATGTATGTGAGCAGTTTATATAAGATTACT{ : 440706 221 : Se} >>>> Target Intron 2 >>>> {r}TyrArgLeuArgLysThrIleAl : 228 .!} 91 bp {!}||||||||| !!|||.!!|||:! Gl}++ ++{y}TyrArgLeuGlyLysAlaIleSe 440707 : GG}gt.........................ag{C}TATCGCTTAGGAAAAGCTATTTC : 440821 229 : aAspLeuSerSerSerArgGlnMetAspLeu<->AsnPheArgAspIleArgHisVal : 246 !:!! !!!!!.!!!! ! |||..!:!! |||!:!! !|||.!! ! !!.! rAsnAlaThrLysThrSerPheMetSerValGlnAsnTyrThrAspPheTyrCysAla 440822 : GAACGCGACGAAGACGTCTTTCATGTCCGTACAGAATTACACCGACTTCTACTGTGCC : 440878 247 : ValAspCysHisArgAsnThrLeuGlnLeuVal : 257 |||||| !|||! !!..! !:!!:!!|||||| ValAspIleHisThrArgIleIleLysLeuVal 440879 : GTGGACATTCACACAAGAATTATAAAGTTGGTA : 440913 vulgar: gi|815903135|ref|XP_012237574.1| 95 257 . KQ414815.1 440006 440913 + 214 M 37 111 S 0 1 5 0 2 I 0 323 3 0 2 S 1 2 M 86 258 S 0 2 5 0 2 I 0 87 3 0 2 S 1 1 M 18 54 G 0 3 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 440007 440913 214 + . gene_id 1 ; sequence gi|815903135|ref|XP_012237574.1| ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 440007 440118 . + . KQ414815.1 exonerate:protein2genome:local exon 440007 440118 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 440119 440120 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 440119 440445 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 440444 440445 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 440446 440707 . + . KQ414815.1 exonerate:protein2genome:local exon 440446 440707 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 440708 440709 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 440708 440798 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 440797 440798 . + . intron_id 1 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 440799 440913 . + . KQ414815.1 exonerate:protein2genome:local exon 440799 440913 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 440007 440913 214 + . alignment_id 1 ; Query gi|815903135|ref|XP_012237574.1| ; Align 440007 96 111 ; Align 440448 134 258 ; Align 440800 221 54 ; Align 440857 239 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815903135|ref|XP_012237574.1| PREDICTED: odorant receptor 67c-like [Bombus impatiens] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 185 Query range: 0 -> 51 Target range: 439271 -> 439424 1 : MetAspValPheTyrArgGlnTyrAsnThrTyrArgIleLeuLeuSerIleSerGlyL : 20 |||||||||||| !!!:!||||||!..|||||||||:!!:!!||||||:!: !|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 439272 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGCTAGGAC : 439329 21 : euTrpProTyrHisLysSerIleTyrSerThrIleHisArgIleSerIleSerValIl : 39 ||||||||||| !:!!||||||||||||||||||||||||||||||.!!:!!..!|| euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 439330 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 439386 40 : eMetLeuAlaTyrIleValPheGluValLeuSerLeu : 51 |||||||:!!! !|||:!!|||||||||:!!..!:!! eMetLeuSerCysIleIlePheGluValMetGlnIle 439387 : TATGCTTTCGTGTATTATATTTGAGGTGATGCAAATA : 439424 vulgar: gi|815903135|ref|XP_012237574.1| 0 51 . KQ414815.1 439271 439424 + 185 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439272 439424 185 + . gene_id 2 ; sequence gi|815903135|ref|XP_012237574.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 439272 439424 . + . KQ414815.1 exonerate:protein2genome:local exon 439272 439424 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 439272 439424 185 + . alignment_id 2 ; Query gi|815903135|ref|XP_012237574.1| ; Align 439272 1 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815903135|ref|XP_012237574.1| PREDICTED: odorant receptor 67c-like [Bombus impatiens] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 181 Query range: 0 -> 51 Target range: 443381 -> 443534 1 : MetAspValPheTyrArgGlnTyrAsnThrTyrArgIleLeuLeuSerIleSerGlyL : 20 |||||||||||| !!!:!||||||!..|||||||||:!!:!!||||||:!:! !|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 443382 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGTTAGGAC : 443439 21 : euTrpProTyrHisLysSerIleTyrSerThrIleHisArgIleSerIleSerValIl : 39 ||||||||||| !:!!||||||||||||||||||||||||||||||.!!:!!..!|| euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 443440 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 443496 40 : eMetLeuAlaTyrIleValPheGluValLeuSerLeu : 51 |!!:|||:!!! !|||:!!|||||||||:!!..!:!! eIleLeuSerCysIleIlePheGluValMetGlnIle 443497 : TATACTTTCGTGTATTATATTTGAGGTGATGCAAATA : 443534 vulgar: gi|815903135|ref|XP_012237574.1| 0 51 . KQ414815.1 443381 443534 + 181 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 443382 443534 181 + . gene_id 3 ; sequence gi|815903135|ref|XP_012237574.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 443382 443534 . + . KQ414815.1 exonerate:protein2genome:local exon 443382 443534 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 443382 443534 181 + . alignment_id 3 ; Query gi|815903135|ref|XP_012237574.1| ; Align 443382 1 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815903135|ref|XP_012237574.1| PREDICTED: odorant receptor 67c-like [Bombus impatiens] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 305 -> 363 Target range: 445817 -> 446064 306 : TyrAsnSerThrTrpTyrTyrMetProLeuGluAlaGlnLysLeuLeuLeuPheIleM : 325 ||||||||||||||||||! !:!:||||||...||||||||||||||||||||||||| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 326 : etLeuArgSerSerThrGluSerValIleAsnIlePheGlyPhePheValAlaSerHi : 344 ||:!!!:!|||!!!! ! !!!! !||||||:!!! !|||.!.|||!.! !!!!!:! etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 345 : sAlaGlyTyrSerLys >>>> Target Intron 1 >>>> LeuLeuSerThrS : 354 ! !|||!:!|||..! 73 bp :!!:!!||||||| rLysGlyPheSerSer++ ++MetIleSerThrS 445933 : CAAAGGTTTTTCCTCGgt.........................agATGATAAGCACTT : 446035 355 : erPheSerTyrPheThrMetIleTyrSer : 363 ||||||||||| !!||| !||||||||| erPheSerTyrValThrAlaIleTyrSer 446036 : CTTTCTCGTATGTCACAGCGATATATTCG : 446064 vulgar: gi|815903135|ref|XP_012237574.1| 305 363 . KQ414815.1 445817 446064 + 171 M 44 132 5 0 2 I 0 69 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 446064 171 + . gene_id 4 ; sequence gi|815903135|ref|XP_012237574.1| ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 445818 445949 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445949 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445950 445951 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445950 446022 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 446021 446022 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 446023 446064 . + . KQ414815.1 exonerate:protein2genome:local exon 446023 446064 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 446064 171 + . alignment_id 4 ; Query gi|815903135|ref|XP_012237574.1| ; Align 445818 306 132 ; Align 446023 350 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815903135|ref|XP_012237574.1| PREDICTED: odorant receptor 67c-like [Bombus impatiens] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 163 Query range: 305 -> 363 Target range: 441705 -> 441952 306 : TyrAsnSerThrTrpTyrTyrMetProLeuGluAlaGlnLysLeuLeuLeuPheIleM : 325 ||||||||||||||||||! !:!:||||||...||||||||||||||||||||||||| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 326 : etLeuArgSerSerThrGluSerValIleAsnIlePheGlyPhePheValAlaSerHi : 344 ||:!!!:!|||!!!! ! !!!! !!!:|||:!!! !|||.!.|||!.! !!!!!:! etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 345 : sAlaGlyTyrSerLys >>>> Target Intron 1 >>>> LeuLeuSerThrS : 354 ! !|||!:!|||..! 73 bp :!!:!!||||||| rLysGlyPheSerSer++ ++MetIleSerThrS 441821 : CAAAGGTTTTTCCTCGgt.........................agATGATAAGCACTT : 441923 355 : erPheSerTyrPheThrMetIleTyrSer : 363 ||||||||||| !!.!! !||||||||| erPheSerTyrValAlaAlaIleTyrSer 441924 : CCTTCTCGTATGTCGCAGCGATATATTCG : 441952 vulgar: gi|815903135|ref|XP_012237574.1| 305 363 . KQ414815.1 441705 441952 + 163 M 44 132 5 0 2 I 0 69 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441952 163 + . gene_id 5 ; sequence gi|815903135|ref|XP_012237574.1| ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 441706 441837 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441837 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 441838 441839 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 441838 441910 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 441909 441910 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 441911 441952 . + . KQ414815.1 exonerate:protein2genome:local exon 441911 441952 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441952 163 + . alignment_id 5 ; Query gi|815903135|ref|XP_012237574.1| ; Align 441706 306 132 ; Align 441911 350 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815903135|ref|XP_012237574.1| PREDICTED: odorant receptor 67c-like [Bombus impatiens] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 148 -> 221 Target range: 444604 -> 444823 149 : ProIleThrLeuAspLeuLeuLeuProLeuAsnGluSerArgGlyArgTyrPheSerT : 168 |||:!!:!!:!!|||||||||:!!|||||||||.!.|||||| !||||||.!!.!!| ProValSerMetAspLeuLeuValProLeuAsnAsnSerArgProArgTyrLeuGlyT 444605 : CCAGTATCAATGGATCTGTTAGTACCTTTGAACAATTCCAGACCTCGTTATCTTGGCT : 444662 169 : yrLeuThrMetPheSerHisAspArgIleGluTyrValAspMetValCysValAsnIl : 187 ||!!!..!!!:.!! !! !:!!!:!|||:!!|||:!!|||.!.:!! !! !! yrPheValIleLeuProSerAsnGlnIleGlnTyrIleAspPheMetThrPheTyrGl 444663 : ACTTTGTTATTCTTCCCTCTAATCAAATACAGTATATTGATTTTATGACATTTTATGG : 444719 188 : eLeuValValTyrThrIleGlyLeuPheCysLeuAlaGlyThrGluLeuMetLeuAla : 206 !:!!||| ! !:!:||||||!!. !:!!||| !!||||||! !:!:|||::! yThrLeuValProPheValGlyLeuLeuThrValAlaCysThrGluSerLeuLeuSer 444720 : GACATTAGTTCCCTTTGTGGGATTATTAACTGTAGCATGCACGGAATCGCTTCTTAGT : 444776 207 : ValPheAlaHisTyrMetCysGlyLeuPheGluIleThrSerTyr : 221 :!! !||| |||:!!|||.!!|||!:!:!!||||||.!!||| IleSerAlaMetTyrLeuCysSerLeuTyrLysIleThrGlyTyr 444777 : ATTAGCGCAATGTATCTGTGCAGTTTATATAAGATTACTGGGTAC : 444823 vulgar: gi|815903135|ref|XP_012237574.1| 148 221 . KQ414815.1 444604 444823 + 160 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 444605 444823 160 + . gene_id 6 ; sequence gi|815903135|ref|XP_012237574.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 444605 444823 . + . KQ414815.1 exonerate:protein2genome:local exon 444605 444823 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 444605 444823 160 + . alignment_id 6 ; Query gi|815903135|ref|XP_012237574.1| ; Align 444605 149 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815903135|ref|XP_012237574.1| PREDICTED: odorant receptor 67c-like [Bombus impatiens] Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 304 -> 365 Target range: 128560 -> 128303 305 : SerTyrAsnSerThrTrpTyrTyrMetProLeuGluAlaGlnLysLeuLeuLeuPheI : 324 |||||| !:!!! !|||||| ! |||:::::::::||||||:::|||||||||: SerTyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheL 128560 : AGCTATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCC : 128503 325 : leMetLeuArgSerSerThrGluSerValIleAsnIlePheGlyPhePheValAlaSe : 343 !!|||! !|||! !! ! ! !!!! !:!!!!.:!: ..!!!. !!!.!|||.! euMetHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGl 128502 : TCATGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGG : 128446 344 : rHisAlaGlyTyrSerLys >>>> Target Intron 1 >>>> LeuLeuSerT : 353 !:!!! ! !|||:!!! 74 bp :!!:!!..!| yAsnGluLeuTyrAlaThr++ ++MetValGlnT 128445 : TAACGAGTTGTACGCTACCgt.........................agaTGGTGCAGA : 128342 354 : hrSerPheSerTyrPheThrMetIleTyrSerAsnGln : 365 ||.!!|||||||||||||||:!::!!|||||| ||| hrGlyPheSerTyrPheThrValLeuTyrSerLeuGln 128341 : CTGGTTTCTCCTACTTTACGGTTCTCTACTCGTTGCAA : 128304 vulgar: gi|815903135|ref|XP_012237574.1| 304 365 . KQ414817.1 128560 128303 - 104 M 45 135 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128304 128560 104 - . gene_id 1 ; sequence gi|815903135|ref|XP_012237574.1| ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128560 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128560 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128304 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128304 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128304 128560 104 - . alignment_id 1 ; Query gi|815903135|ref|XP_012237574.1| ; Align 128561 305 135 ; Align 128352 350 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909022|ref|XP_012240158.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor Or2-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 283 Query range: 125 -> 280 Target range: 2873 -> 3756 126 : IleSerAlaAsnIleGlyAsnAsnGlySerGluArgLeuLeuProPheLysMetTrpValAs : 146 .!!||||||!::||||||...||| |||!!:||||||||| ! !!!!..!.|||:!!:! PheSerAlaSerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAs 2874 : TTCTCAGCAAgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGA : 2934 147 : nLeuProLeuThrValThrProTyrTyrGluIleMetPheAlaIleGlu >>>> Target : 163 !||||||:!!|||:!!||||||||||||||||||:::|||...|||:!! 4 pLeuProIleThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2935 : CCTGCCGATAACCATCACACCATactatgaaatattatttacgaTACAGgt........... : 2987 164 : Intron 1 >>>> LeuLeuAlaValGlnGlnIleGlyAlaSerTyrLeuCysProGluG : 178 06 bp :!!!!! !:!!..! ! :!! !! !|||||||||||| !!!:. ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspA 2988 : ..............agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACA : 3436 179 : lnPheLeuCysValLeuAsnLeuHisValValTyrGlnPheArgMetLeuGlnLysThrLeu : 198 !.|||||||||:!!:!!|||||||||..!!.! !|||||||||!!:|||||| ! ! !||| snPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeu 3437 : ATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTG : 3496 199 : LeuAsnLeuTrpSerAsnIleAspGluGlnThrAspIleAla<-><-><-><->AspTyrSe : 215 ! !|||:!!!! .!! ! !!!:...... |||::: ..! !!|| SerAsnValCysGlyAlaAsnGluArgSerAspLysIleSerLysLysThrProSerAsnSe 3497 : TCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTC : 3559 216 : rAsnLysTyrTyrIleIleLeuLysLysCysIleArgLysHisGlnTrpLeuIleGlnLeuA : 236 |:!!:!!! !||| !! !!!|||!!.||||||!:!:!!|||||| ||||||:!!! ! rAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrC 3560 : GGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACT : 3622 237 : snAlaGlnLeuGluUnkValPheThrLeuProIleLeuSerHisMetValIlePheSerVal : 256 ! !:!!|||:!! |||||| !:!! !:!:|||:!!!!.:!!:!!:!!||||||:!! ysAsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeu 3623 : GTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTG : 3682 257 : LeuMetCysPheAspThrTyrGluIleValLeuAlaAsnIleSerSerGluLysArgLeuIl : 277 |||||||||.!!||| !||| !:!::!!:!!::!!.. !! !!.! :!!||| !|| LeuMetCysLeuAspGlyTyrLeuValMetValSerArgTyrTyrLysIleGlnArgAsnIl 3683 : TTAATGTGCCTCGATGGATATTTGGTGATGGTTAGTAGGTATTACAAAATTCAACGCAATAT : 3745 278 : ePhePhePhe : 280 |... ||| eIleValPhe 3746 : CAtagttttc : 3756 vulgar: gi|815909022|ref|XP_012240158.1| 125 280 . KQ414828.1 2873 3756 + 283 M 37 111 5 0 2 I 0 402 3 0 2 M 50 150 G 0 12 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2874 3756 283 + . gene_id 1 ; sequence gi|815909022|ref|XP_012240158.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2874 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2874 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3756 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3756 . + . insertions 12 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2874 3756 283 + . alignment_id 1 ; Query gi|815909022|ref|XP_012240158.1| ; Align 2874 126 111 ; Align 3391 163 150 ; Align 3553 213 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909022|ref|XP_012240158.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor Or2-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 240 Query range: 267 -> 363 Target range: 12469 -> 12757 268 : AlaAsnIleSerSerGluLysArgLeuIlePhePhePheHisMetIleGlySerPheAla : 287 ||||||! !||| !! !!:!||| !||||||.!.|||! !!!: !|||:!!.!.!.! AlaAsnThrSerLeuAlaArgArgSerIlePheMetPheLeuIleCysGlyAlaMetVal 12470 : GCTAATACTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTT : 12527 288 : HisIleIlePhePheThrTyrIleCysHisGlyLeuValGluGluSerThrAsnIleSer : 307 :!:.!!.!.|||||||||! !|||:!! !:!!:!!|||:!!||| !||||||:!! LeuLeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAla 12528 : TTATTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCT : 12587 308 : IleAlaSerTyrSerGlyTrpTrpValCysLeuProMetSerLysThrGlyLysLysIle : 327 .!!|||:!!||||||!.! |||..! !!:!!||||||!:!|||||||||||||||:!! PheAlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeu 12588 : TTTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTA : 12647 328 : ArgLysAspMetLysMetMetMetMetLysAlaMetArgProCysGlnLeuThrAlaGly : 347 ||| ! |||:!!! !|||:!:!!: !!:!:!!! ||| !||| |||||||||..! ArgHisAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsn 12648 : CGGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAAT : 12707 348 : GlyPhePheProValAsnLeuGluThrSerThrAlaIlePheSerLeu : 363 |||||||||||||||::!|||||||||! !|||.!!:!: !|||||| GlyPhePheProValSerLeuGluThrTyrThrThrValSerSerLeu 12708 : GGATTTTTCCCTGTGTCCTTAGAAACTTATACTACGGTGAGTTCACTA : 12757 vulgar: gi|815909022|ref|XP_012240158.1| 267 363 . KQ414828.1 12469 12757 + 240 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 12470 12757 240 + . gene_id 2 ; sequence gi|815909022|ref|XP_012240158.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 12470 12757 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12757 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 12470 12757 240 + . alignment_id 2 ; Query gi|815909022|ref|XP_012240158.1| ; Align 12470 268 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909022|ref|XP_012240158.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor Or2-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 236 Query range: 100 -> 208 Target range: 17743 -> 18177 101 : AsnPheCysLysLeuTrpThrValPheIleLeuLeuValThrGluSerSerLeuSerPhe : 120 ||| :::::: ...|||||| ...|||:::::: ... AsnSerSerArgValCysIleThrPheIleAlaGlnLysValGluAsnAsnLysGlu*** 17744 : aattctagtcgggtgtgtattacttttattgcacaaaaagtagaaaataataaagaataa : 17801 121 : TyrAlaIleValProIleSerAlaAsnIleGlyAsnAsnGlySerGluArgLeuLeuPro : 140 !||| !!.! !|||! ||||||||||||...||| |||||||||:!!|||||| ValAlaArgAlaPheIleLeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuPro 17802 : gTTGCTCGCGCTTTCATTTTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCA : 17861 141 : PheLysMetTrpValAsnLeuProLeuThrValThrProTyrTyrGluIleMetPheAla : 160 |||!!.|||||||||||||||||||||:!!:!!|||||||||||||||||| |||::: PheAsnMetTrpValAsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheSer 17862 : TTTAATATGTGGGTCAACTTGCCATTATCAATGACGCCATATTACgaaataactttttca : 17921 161 : IleGlu >>>> Target Intron 1 >>>> LeuLeuAlaValGlnGlnIleGlyA : 171 ::::!! 110 bp ::!|||:!!:!! ! !!.||||||! LeuGln++ ++ValLeuSerLeuTyrHisIleGlyV 17922 : ttaCAGgt.........................aggtTCTGTCTCTGTACCATATTGGCG : 18064 172 : laSerTyrLeuCysProGluGlnPheLeuCysValLeuAsnLeuHisValValTyrGlnP : 191 .!||||||!!!||| :::...|||||||||::!:!!|||||||||!.!!.! !|||| alSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnP 18065 : TGAGTTATTTCTgcttcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGT : 18124 192 : heArgMetLeuGlnLysThrLeuLeuAsnLeuTrpSerAsnIleAspGluGln : 208 |||||:!:|||||| ! !:!! !|||:!! ..! ! |||:::::: heArgValLeuGlnTyrArgMetAlaAsnMetThrAspLeuLysAspLysGlu 18125 : TTCGAGTATTGCAATACCGAATGGCGAATATGACCGATTTAAAGGacaaagag : 18177 vulgar: gi|815909022|ref|XP_012240158.1| 100 208 . KQ414828.1 17743 18177 + 236 M 62 186 5 0 2 I 0 106 3 0 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17744 18177 236 + . gene_id 3 ; sequence gi|815909022|ref|XP_012240158.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17744 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17744 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18177 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18177 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17744 18177 236 + . alignment_id 3 ; Query gi|815909022|ref|XP_012240158.1| ; Align 17744 101 186 ; Align 18040 163 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909022|ref|XP_012240158.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor Or2-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 185 Query range: 125 -> 239 Target range: 37450 -> 38096 126 : IleSerAlaAsnIleGlyAsnAsnGlySerGluArgLeuLeuProPheLysMetTrpVal : 145 ||||||||||||:!!|||!!.|||! !|||!!:||| !! ! !!:! ! ||||||:!! IleSerAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 37451 : atttcagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 37508 146 : AsnLeuProLeuThrValThrProTyrTyrGluIleMetPheAlaIleGlu >>>> Ta : 163 :!!|||||||||:!!:!!|||||||||||||||||| ::! !|||:!! AspLeuProLeuSerIleThrProTyrTyrGluIleThrTyrIleIleGln++ 37509 : GATCTACCATTATCCATAACAccatattatgaaattacttACATAATACAGgt....... : 37564 164 : rget Intron 1 >>>> LeuLeuAlaValGlnGlnIleGlyAlaSerTyrLeuCysP : 176 307 bp !|||:!!||| ! |||:!!.!!|||!!!||||||||| ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysP 37565 : ..................agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCt : 37908 177 : roGluGlnPheLeuCysValLeuAsnLeuHisValValTyrGlnPheArgMetLeuGlnL : 196 ::: ...... :::||| |||||||||!.! !|||||||||!!:|||||| heAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnT 37909 : ttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAAT : 37968 197 : ysThrLeuLeuAsnLeuTrpSerAsnIleAspGluGlnThrAspIleAlaAspTyrSerA : 216 ! ! !:!! !|||:!! |||..!:!!..!||| !..! ! ! !::!!!: !! !!! yrArgIleAlaAsnVal---SerGlyLeuSerGluIleValLysSerSerGluAsnProS 37969 : ACAGAATTGCCAATGTG---TCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAA : 38025 217 : snLysTyrTyrIleIleLeuLysLysCysIleArgLysHisGlnTrpLeuIleGlnLeuA : 236 :!! ! !! ! :!! !! !:!!|||||| !! !||| !:!! ! !||||||! !: erThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnH 38026 : GCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGC : 38085 237 : snAlaGlnLeu : 239 !! ! !||| isGlnAlaLeu 38086 : ATCAGGCACTA : 38096 vulgar: gi|815909022|ref|XP_012240158.1| 125 239 . KQ414828.1 37450 38096 + 185 M 37 111 5 0 2 I 0 303 3 0 2 M 39 117 G 1 0 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37451 38096 185 + . gene_id 4 ; sequence gi|815909022|ref|XP_012240158.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37451 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37451 37561 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 38096 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 38096 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 37451 38096 185 + . alignment_id 4 ; Query gi|815909022|ref|XP_012240158.1| ; Align 37451 126 111 ; Align 37869 163 117 ; Align 37986 203 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909022|ref|XP_012240158.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor Or2-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 125 -> 239 Target range: 22307 -> 22953 126 : IleSerAlaAsnIleGlyAsnAsnGlySerGluArgLeuLeuProPheLysMetTrpVal : 145 ||| ||||||:!!|||!!.|||! !|||!!:||| !! ! !!:! ! ||||||:!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 22308 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 22365 146 : AsnLeuProLeuThrValThrProTyrTyrGluIleMetPheAlaIleGluLeuLeuAla : 165 :!!|||||||||:!!||||||||||||||||||||| ::! !|||:!!:!!||| !! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 22366 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 22425 166 : ValGlnGln{I} >>>> Target Intron 1 >>>> {le}GlyAlaSerTyrLeu : 174 :!! ..!{|} 307 bp {||}.!!|||!!!|||||| IlePheSer{I}+- ++{le}SerAlaCysTyrLeu 22426 : ATTTTCTCA{A}gg.........................ag{TT}AGCGCGTGTTACCTT : 22759 175 : CysProGluGlnPheLeuCysValLeuAsnLeuHisValValTyrGlnPheArgMetLeu : 194 ||| ::: ...... :::||| |||||||||!.! !|||||||||!!:||| CysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeu 22760 : TGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTA : 22819 195 : GlnLysThrLeuLeuAsnLeuTrpSerAsnIleAspGluGlnThrAspIleAlaAspTyr : 214 ||| ! ! !:!! !|||:!! |||..!:!!..!||| !..! ! ! !::!!!: !! GlnTyrArgIleAlaAsnVal---SerGlyLeuSerGluIleValLysSerSerGluAsn 22820 : CAATACAGAATTGCCAATGTG---TCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAAT : 22876 215 : SerAsnLysTyrTyrIleIleLeuLysLysCysIleArgLysHisGlnTrpLeuIleGln : 234 !!!:!! ! !! ! :!! !! !:!!|||||| !! !||| !:!! ! !|||||| ProSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGln 22877 : CCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAA : 22936 235 : LeuAsnAlaGlnLeu : 239 ! !:!! ! !||| GlnHisGlnAlaLeu 22937 : CAGCATCAGGCACTA : 22953 vulgar: gi|815909022|ref|XP_012240158.1| 125 239 . KQ414828.1 22307 22953 + 141 M 43 129 S 0 1 5 0 2 I 0 303 3 0 2 S 1 2 M 32 96 G 1 0 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22308 22953 141 + . gene_id 5 ; sequence gi|815909022|ref|XP_012240158.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22308 22437 . + . KQ414828.1 exonerate:protein2genome:local exon 22308 22437 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22438 22439 . + . intron_id 1 ; splice_site "GG" KQ414828.1 exonerate:protein2genome:local intron 22438 22744 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22743 22744 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22745 22953 . + . KQ414828.1 exonerate:protein2genome:local exon 22745 22953 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 22308 22953 141 + . alignment_id 5 ; Query gi|815909022|ref|XP_012240158.1| ; Align 22308 126 129 ; Align 22747 170 96 ; Align 22843 203 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909022|ref|XP_012240158.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor Or2-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 125 -> 179 Target range: 9319 -> 9481 126 : IleSerAlaAsnIleGlyAsnAsnGlySerGluArgLeuLeuProPheLysMetTrpValAs : 146 :!!|||!.!:!!! ! !!:!||| !||||||||| !!!!! !||| ! ||||||:!!|| ValSerValHisSerGlnSerAsnLysSerGluArgAlaPheLeuPheAspMetTrpLeuAs 9320 : GTTTCAGTGCACAGTCAAAGCAACAAATCTGAAAGAGCGTTTCTGTTCGACATGTGGCTCAA : 9380 147 : nLeuProLeuThrValThrProTyrTyrGluIleMetPheAlaIleGluLeuLeuAlaValG : 167 ||||||||||||||||:!!|||||||||||| !|||!!.|||:!!:!!:!!!!! ||| nLeuProLeuThrValSerProTyrTyrGluGlyMetLeuAlaValGlnValPheProValP 9381 : TTTACCTCTGACTGTTTCGCCTTACTACGAAGGAATGTTGGCTGTACAGGTATTTCcagttt : 9443 168 : lnGlnIleGlyAlaSerTyrLeuCysProGluGlnPhe : 179 ||| !||| ! !! ||| ! |||!:! heThrIleLeuProSerArgAspLeuProTyrGlnTyr 9444 : tcacaattttaccTTCACGCGATTTACCTTATCAATAT : 9481 vulgar: gi|815909022|ref|XP_012240158.1| 125 179 . KQ414828.1 9319 9481 + 117 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 9320 9481 117 + . gene_id 6 ; sequence gi|815909022|ref|XP_012240158.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 9320 9481 . + . KQ414828.1 exonerate:protein2genome:local exon 9320 9481 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 9320 9481 117 + . alignment_id 6 ; Query gi|815909022|ref|XP_012240158.1| ; Align 9320 126 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909022|ref|XP_012240158.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor Or2-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 125 -> 166 Target range: 27339 -> 27462 126 : IleSerAlaAsnIleGlyAsnAsnGlySerGluArgLeuLeuProPheLysMetTrpVal : 145 ||| ||||||:!!|||!!.|||! !|||!!:||| !! ! !||| ! |||||| !! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPhe 27340 : attttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTC : 27397 146 : AsnLeuProLeuThrValThrProTyrTyrGluIleMetPheAlaIleGluLeuLeuAla : 165 :!!|||||||||:!!||||||||||||||||||||| ::! !|||:!!:!!||| !! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 27398 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 27457 166 : Val : 166 :!! Ile 27458 : ATT : 27462 vulgar: gi|815909022|ref|XP_012240158.1| 125 166 . KQ414828.1 27339 27462 + 116 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27340 27462 116 + . gene_id 7 ; sequence gi|815909022|ref|XP_012240158.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27340 27462 . + . KQ414828.1 exonerate:protein2genome:local exon 27340 27462 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27340 27462 116 + . alignment_id 7 ; Query gi|815909022|ref|XP_012240158.1| ; Align 27340 126 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909022|ref|XP_012240158.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor Or2-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 125 -> 166 Target range: 32386 -> 32509 126 : IleSerAlaAsnIleGlyAsnAsnGlySerGluArgLeuLeuProPheLysMetTrpVal : 145 ||| ||||||:!!|||!!.|||! !|||!!:||| !! ! !!:! ! ||||||:!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 32387 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 32444 146 : AsnLeuProLeuThrValThrProTyrTyrGluIleMetPheAlaIleGluLeuLeuAla : 165 :!!|||||||||:!!||||||||||||||||||||| ::! !|||:!!:!!||| !! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 32445 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 32504 166 : Val : 166 :!! Ile 32505 : ATT : 32509 vulgar: gi|815909022|ref|XP_012240158.1| 125 166 . KQ414828.1 32386 32509 + 115 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32387 32509 115 + . gene_id 8 ; sequence gi|815909022|ref|XP_012240158.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 32387 32509 . + . KQ414828.1 exonerate:protein2genome:local exon 32387 32509 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32387 32509 115 + . alignment_id 8 ; Query gi|815909022|ref|XP_012240158.1| ; Align 32387 126 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909022|ref|XP_012240158.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor Or2-like [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 202 -> 271 Target range: 10969 -> 11176 203 : SerAsnIleAspGluGlnThrAspIleAlaAspTyrSerAsnLysTyrTyrIleIleLeu : 222 |||... ::: :::::!! :!:! !|||! !!!!..!!:!! !||| ! !!!! SerGluLysAsnMetGluSerValLeuGluAspCysThrArgArgSerTyrGluLysPhe 10970 : AgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGTAGATCTTACGAGAAATTT : 11027 223 : LysLysCysIleArgLysHisGlnTrpLeuIleGlnLeuAsnAlaGlnLeuGluUnkVal : 242 |||!..! !:!!|||:!!|||||| !||||||.!.! ! !!! !:!!|||||| ||| LysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLysLeuGluHisVal 11028 : AAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAGCTTGAACACGTT : 11087 243 : PheThrLeuProIleLeuSerHisMetValIlePheSerValLeuMetCysPheAspThr : 262 !:!||| ! !||||||.!!!!.:!!:!!:!:||||||||||||!!:|||.!! ! ! TyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIleCysLeuPheGly 11088 : TACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATTTGCCTCTTTGGT : 11147 263 : TyrGluIleValLeuAlaAsnIleSer : 271 |||:!!|||:!!|||!.!!:!|||||| TyrGlnIleLeuLeuValSerIleSer 11148 : TATCAGATATTATTGGTTAGTATTTCA : 11176 vulgar: gi|815909022|ref|XP_012240158.1| 202 271 . KQ414828.1 10969 11176 + 112 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10970 11176 112 + . gene_id 9 ; sequence gi|815909022|ref|XP_012240158.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 10970 11176 . + . KQ414828.1 exonerate:protein2genome:local exon 10970 11176 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10970 11176 112 + . alignment_id 9 ; Query gi|815909022|ref|XP_012240158.1| ; Align 10970 203 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815895210|ref|XP_012241922.1| PREDICTED: odorant receptor 13a-like isoform X2 [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 1 -> 127 Target range: 22758 -> 23133 2 : LeuAlaThrAspGlyLeuIleAlaThrAlaLeuLeuHisThrCysGlyHisPheAlaVal : 21 |||..! ||| :::... ||||||..!..!|||!!.||| !:!! LeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIle 22759 : CTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATA : 22816 22 : LeuArgLysAsnValLysGlnLeuAspSerTyrIleTyrArgIleThrArgLeuLysThr : 41 |||!:! ! !..:!! .!.:!! ||| !:!! !..!|||..!!:! !!.. ! LeuGlnTyrArgIleAlaAsnVal---SerGlyLeuSerGluIleValLysSerSerGlu 22817 : CTACAATACAGAATTGCCAATGTG---TCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAA : 22873 42 : AsnSerLysHisIleAsnAlaAsnLeuTyrGluIleLysIleGlnIleIleHisValIle : 61 ||| !!!.. !.!. ! !!! ! ! :!! ! ! |||:!!.!!! :!! !||| AsnProSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIle 22874 : AATCCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATT : 22933 62 : LysHisHisGlnValValLeuTrpPheCysAspAsnMetGluLysAsnPheHisLeuIle : 81 :!!!!.||||||!.!:!!:!! ||||||! !..:!:|||:!! ||| :!!||| GlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIle 22934 : CAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATC : 22993 82 : LeuPheLeuGlnAlaMetIleSerSerLeuLeuIleCysPheValGlyPheGlnValSer : 101 :!!.!! !|||!.!:!:!!:||||||:!!||||||||||||:!!|||!:!|||||| ! ValLeuGlyGlnValLeuMetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeu 22994 : GTACTCGGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTC : 23053 102 : AlaValArgIlePheThrAspLeuLysIleValIleAsnHisLysGlnLeuIleIleCys : 121 !|||!!!||| !:! !! !||| ! !:::... :::...... ... LeuValSerIleGluSerTyrAsnLysTyrCysMetThrLysGluAsnPheHisPheGly 23054 : CTGGTGAGTATCGAAAGCTATAATAAATACTGTatgacaaaagaaaattttcatttcgga : 23113 122 : TyrLeuIleHisIlePhe : 127 ||||||...||| ArgGluIleHisPhePhe 23114 : agagaaattcattttttt : 23133 vulgar: gi|815895210|ref|XP_012241922.1| 1 127 . KQ414828.1 22758 23133 + 123 M 28 84 G 1 0 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22759 23133 123 + . gene_id 1 ; sequence gi|815895210|ref|XP_012241922.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 22759 23133 . + . KQ414828.1 exonerate:protein2genome:local exon 22759 23133 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 22759 23133 123 + . alignment_id 1 ; Query gi|815895210|ref|XP_012241922.1| ; Align 22759 2 84 ; Align 22843 31 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815895210|ref|XP_012241922.1| PREDICTED: odorant receptor 13a-like isoform X2 [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 1 -> 105 Target range: 32837 -> 33146 2 : LeuAlaThrAspGlyLeuIleAlaThrAlaLeuLeuHisThrCysGlyHisPheAlaVal : 21 |||..! |||...:::... !||||||..!..!|||!!.||| !:!! LeuCysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArgIle 32838 : CTTTGCTttgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATA : 32895 22 : LeuArgLysAsnValLysGlnLeuAspSerTyrIleTyrArgIleThrArgLeuLysThr : 41 |||!:! ! !..:!! .!.:!! ||| !:!! !..!|||..!!:! !!!. ! LeuGlnTyrArgIleAlaAsnVal---SerGlyLeuSerGluIleValLysSerAsnAsp 32896 : CTACAATACAGAATTGCCAATGTG---TCAGGTCTAAGCGAGATAGTGAAGAGCAATGAT : 32952 42 : AsnSerLysHisIleAsnAlaAsnLeuTyrGluIleLysIleGlnIleIleHisValIle : 61 |||!!!!.. !.!. ! !!! ! ! :!! ! ! |||:!!.!!! :!! !||| AsnThrSerThrAlaGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIle 32953 : AATACAAGCACGGCTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATT : 33012 62 : LysHisHisGlnValValLeuTrpPheCysAspAsnMetGluLysAsnPheHisLeuIle : 81 :!!!!.||||||!.!:!:::: ||||||::: :::|||:!! ||| :!!||| GlnGlnHisGlnAlaLeuIleGluPheCysGluIleLeuGluGluValPheThrValIle 33013 : CAACAACATCAGGCACTaattgaattttgtgaaatactCGAAGAGGTATTCACGGTAATC : 33072 82 : LeuPheLeuGlnAlaMetIleSerSerLeuLeuIleCysPheValGlyPheGlnValSer : 101 :!!.!! !|||!.!:!:!!:! !|||:!!:!!|||||||||!.!|||!:!:!!||| ! ValLeuGlyGlnValLeuMetPheSerIleIleIleCysPheAlaGlyTyrGluValLeu 33073 : GTACTCGGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTC : 33132 102 : AlaValArgIle : 105 !|||!!!||| LeuValSerIle 33133 : CTGGTGAGTATC : 33146 vulgar: gi|815895210|ref|XP_012241922.1| 1 105 . KQ414828.1 32837 33146 + 115 M 28 84 G 1 0 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32838 33146 115 + . gene_id 2 ; sequence gi|815895210|ref|XP_012241922.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 32838 33146 . + . KQ414828.1 exonerate:protein2genome:local exon 32838 33146 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 32838 33146 115 + . alignment_id 2 ; Query gi|815895210|ref|XP_012241922.1| ; Align 32838 2 84 ; Align 32922 31 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815895210|ref|XP_012241922.1| PREDICTED: odorant receptor 13a-like isoform X2 [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 1 -> 105 Target range: 37901 -> 38210 2 : LeuAlaThrAspGlyLeuIleAlaThrAlaLeuLeuHisThrCysGlyHisPheAlaVal : 21 |||..! ||| :::... ||||||..!..!|||!!.||| !:!! LeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIle 37902 : CTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATA : 37959 22 : LeuArgLysAsnValLysGlnLeuAspSerTyrIleTyrArgIleThrArgLeuLysThr : 41 |||!:! ! !..:!! .!.:!! ||| !:!! !..!|||..!!:! !!.. ! LeuGlnTyrArgIleAlaAsnVal---SerGlyLeuSerGluIleValLysSerSerGlu 37960 : CTACAATACAGAATTGCCAATGTG---TCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAA : 38016 42 : AsnSerLysHisIleAsnAlaAsnLeuTyrGluIleLysIleGlnIleIleHisValIle : 61 ||| !!!.. !.!. ! !!! ! ! :!! ! ! |||:!!.!!! :!! !||| AsnProSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIle 38017 : AATCCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATT : 38076 62 : LysHisHisGlnValValLeuTrpPheCysAspAsnMetGluLysAsnPheHisLeuIle : 81 :!!!!.||||||!.!:!!:!! ||||||! !..:!:|||:!! ||| :!!||| GlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIle 38077 : CAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATT : 38136 82 : LeuPheLeuGlnAlaMetIleSerSerLeuLeuIleCysPheValGlyPheGlnValSer : 101 !.!! !|||!.!:!:!!:! !|||:!!|||||||||||||||! !!:!|||!.! ! AlaLeuGlyGlnValLeuMetPheSerIleLeuIleCysPheValValTyrGlnAlaLeu 38137 : GCACTCGGACAAGTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTC : 38196 102 : AlaValArgIle : 105 !|||!!!||| LeuValSerIle 38197 : CTGGTGAGTATC : 38210 vulgar: gi|815895210|ref|XP_012241922.1| 1 105 . KQ414828.1 37901 38210 + 100 M 28 84 G 1 0 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37902 38210 100 + . gene_id 3 ; sequence gi|815895210|ref|XP_012241922.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37902 38210 . + . KQ414828.1 exonerate:protein2genome:local exon 37902 38210 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 37902 38210 100 + . alignment_id 3 ; Query gi|815895210|ref|XP_012241922.1| ; Align 37902 2 84 ; Align 37986 31 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815895212|ref|XP_012241927.1| PREDICTED: odorant receptor 13a-like isoform X3 [Bombus impatiens] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 79 -> 131 Target range: 22914 -> 23070 80 : IleGlnIleIleHisValIleLysHisHisGlnValValLeuTrpPheCysAspAsnMet : 99 |||:!!.!!! :!! !|||:!!!!.||||||!.!:!!:!! ||||||! !..:!: IleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeu 22915 : ATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTC : 22972 100 : GluLysAsnPheHisLeuIleLeuPheLeuGlnAlaMetIleSerSerLeuLeuIleCys : 119 |||:!! ||| :!!|||:!!.!! !|||!.!:!:!!:||||||:!!||||||||| GluGluValPheThrValIleValLeuGlyGlnValLeuMetSerSerIleLeuIleCys 22973 : GAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCTAATGTCTAGCATATTAATTTGC : 23032 120 : PheValGlyPheGlnValSerAlaThrLeuMetGlu : 131 |||:!!|||!:!|||||| ! !..! !!!:||| PheIleGlyTyrGlnValLeuLeuValSerIleGlu 23033 : TTCATCGGGTATCAAGTACTCCTGGTGAGTATCGAA : 23070 vulgar: gi|815895212|ref|XP_012241927.1| 79 131 . KQ414828.1 22914 23070 + 107 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22915 23070 107 + . gene_id 1 ; sequence gi|815895212|ref|XP_012241927.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 22915 23070 . + . KQ414828.1 exonerate:protein2genome:local exon 22915 23070 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22915 23070 107 + . alignment_id 1 ; Query gi|815895212|ref|XP_012241927.1| ; Align 22915 80 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 372 Query range: 53 -> 255 Target range: 1225871 -> 1223355 54 : PheArgLysLeuPheAsnSerLeuGluGluAspTrpLysLeuLeuGluSerLysAs : 72 |||||||||||||||::: !:!!! !..! |||||||||||||||:!!|||:! PheArgLysLeuPheAspLeuMetValArgArgTrpLysLeuLeuGluAlaLysAs 1225871 : tttcgaaaattattcgatcTCATGGTACGAAGATGGAAACTGTTGGAAGCAAAGGA : 1225817 73 : nGluLeuGlnMetLeuAspLysPheThrLysHisGlyTyrLysLeuAlaTyrLeuT : 91 !|||:!!:!!!!:||| ! |||!:!|||!.. ! ||| !:!||| ! ! |||| pGluIleGluIleLeuLysLysTyrThrSerLysGlyMetArgLeuArgGluLeuT 1225816 : CGAAATAGAGATACTGAAGAAATACACCAGTAAAGGGATGAGACTTAGAGAACTGT : 1225760 92 : yrArg{A} >>>> Target Intron 1 >>>> {rg}ThrLeuLeuIleAla : 98 ||!:!{ } 1463 bp { !}:!!|||! !|||!.! yrLys{A}++ ++{sp}SerLeuTrpIleVal 1225759 : ACAAA{G}gt.........................ag{ac}tCGTTGTGGATAGTT : 1224276 99 : LeuValIlePheLeuSerLeuProLeuTyrAsnProValLeuAspIleIleIlePr : 117 |||:!!:!!!:!:!!|||!!!|||||| |||||||||||||||:!!:!! || LeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAspValValAlaPr 1224275 : CTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCC : 1224219 118 : oLeuAsnGluThrArgGlnArgAsnAsnValPheGlnValHisTyrGlyValLeuA : 136 ||||||||||||||||! |||!.. !:!!.!!! !||| !||| ! !!:!!| oLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleA 1224218 : GTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAG : 1224162 137 : spAsnGluGluHisPheTyrIleValTyrValHisLeuSerLeuCysAlaIleIle : 154 ||.!. ! ||||||||||||! !||| !! !!||||||! ! ! !!!.!||| ! spGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSer 1224161 : ACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCC : 1224108 155 : IleValValThrIleIleSerValAspSerLeuTyrIleThrIleIleTyrHisAl : 173 !! !:!!! !||||||:!!||||||! !||||||||||||||||||!:!||| CysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLe 1224107 : TGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCT : 1224051 174 : aCysGlyLeuPheAlaValCys{Gl} >>>> Target Intron 2 >>>> { : 181 !|||||||||||||||||||||{||} 447 bp { uCysGlyLeuPheAlaValCys{Gl}++ -+{ 1224050 : TTGCGGATTGTTCGCAGTGTGT{GG}gt.........................cg{ : 1223578 182 : y}SerGlnIleGlnLysThrAlaGluAsnAsnPheValGluLysAsnGlyThrAsn : 199 |}!.! !.!!::!..!! ! !!!: |||!::..!... !!.. !! ! y}LysThrPheArgSerLysMetAspValAsnTrpThrSerLeuArgArgArgVal 1223577 : T}AAAACGTTCAGATCAAAAATGGACGTAAATTGGACATCTCTAAGACGTCGTGTG : 1223526 200 : IleArgAsnIleGlyTyrAspAlaPheLysGluCysValMetMetHisTyrLysCy : 218 :!! !.!.! !.!! ||| !.!.! !..! ! ...:::||| LeuSerGluAsnSerMetAspHisLeuThrSerIleAsnSerPheTyrTyrTyrVa 1223525 : TTATCTGAGAACAGTATGGATCATCTGACATCAATTAActcattttattattacgt : 1223469 219 : sLeuGlnLeuTyrAspValLeuGluLysCysCysArgAsnLeuTyrLeuIleThrM : 237 ! !::!! !! !.!.:!!||||||!:! !! !!!:!:!!:!!||||||||| !: lSerArgTyrCysGlnIleLeuGluArgSerSerGlnHisMetTyrLeuIleGlnV 1223468 : tTCAAGATACTGCCAGATTCTGGAAAGAAGTAGCCAACATATGTACCTGATTCAAG : 1223412 238 : etValLeuAsnAlaIleIleLeuSerValThrAlaValGluValIleValPheLeu : 255 !:! !|||!:!!.!.!!|||:!!||||||||||||!.!! !|||! !:!!|||||| alGlyLeuSerValPheIleIleSerValThrAlaAlaAlaValArgIlePheLeu 1223411 : TAGGATTAAGCGTGTTCATCATCAGCGTGACGGCTGCCGCAGTGAGAATATTTCTC : 1223358 vulgar: gi|815897156|ref|XP_012249339.1| 53 255 . KQ414851.1 1225871 1223355 - 372 M 39 117 S 0 1 5 0 2 I 0 1459 3 0 2 S 1 2 M 87 261 S 0 2 5 0 2 I 0 443 3 0 2 S 1 1 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1223356 1225871 372 - . gene_id 1 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1225754 1225871 . - . KQ414851.1 exonerate:protein2genome:local exon 1225754 1225871 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1225752 1225753 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1224291 1225753 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1224291 1224292 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1224026 1224290 . - . KQ414851.1 exonerate:protein2genome:local exon 1224026 1224290 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1224024 1224025 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1223579 1224025 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1223579 1223580 . - . intron_id 1 ; splice_site "CG" KQ414851.1 exonerate:protein2genome:local cds 1223356 1223578 . - . KQ414851.1 exonerate:protein2genome:local exon 1223356 1223578 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1223356 1225871 372 - . alignment_id 1 ; Query gi|815897156|ref|XP_012249339.1| ; Align 1225872 54 117 ; Align 1224289 94 261 ; Align 1223578 182 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 357 Query range: 219 -> 342 Target range: 1233762 -> 1233243 220 : GlnLeuTyrAspValLeuGluLysCysCysArgAsnLeuTyrLeuIleThrMetVa : 238 ::!!!!||||||:!!|||.!.:!! !! !!|||||| !||||||||| !:!:! ArgPheTyrAspIleLeuAsnGluSerSerArgAsnSerTyrLeuIleGlnValGl 1233762 : AGGTTTTACGATATTCTAAACGAGAGCAGTCGAAATAGCTACTTGATTCAGGTTGG : 1233708 239 : lLeuAsnAlaIleIleLeuSerValThrAlaValGlu >>>> Target Intro : 251 !|||||| !!!: !:!!|||||||||||||||:!! 80 bp yLeuAsnMetMetGlyIleSerValThrAlaValGln+- 1233707 : ATTGAACATGATGGGCATTAGCGTGACCGCTGTCCAGgc................. : 1233667 252 : n 1 >>>> ValIleValPheLeuAspArgProAlaGluAlaIleArgAlaIleV : 266 ..!:!!:!! |||||||||||||||||||||:!!|||..! !| ++ThrValLeuThrLeuAspArgProAlaGluAlaLeuArgCysAlaV 1233666 : ........agACAGTCCTCACACTGGACAGGCCGGCAGAAGCTCTTAGATGTGCTG : 1233544 267 : alTyrLeuIleAlaGluGlnPheHisLeuTyrMetPheSerLeuProGlyGlnThr : 284 ||!:!|||:!!||||||||||||||||||!:!!!:.!!|||||||||||||||||| alPheLeuValAlaGluGlnPheHisLeuPheIleIleSerLeuProGlyGlnThr 1233543 : TGTTCCTTGTAGCGGAGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACA : 1233490 285 : LeuLeuAspGlnSerValGluLeuSerAsnLys{Il} >>>> Target Intro : 296 |||:!!|||!!.!!!..!:!!||||||!!. ! {||} 70 bp LeuValAspHisCysThrLysLeuSerLysAsp{Il}++ 1233489 : CTCGTGGATCATTGTACGAAACTATCGAAGGAT{AT}gt................. : 1233450 297 : n 2 >>>> {e}TyrAspSerAspTrpTyrLysIleProThrLysAlaGlnLysV : 311 {|}|||..!||| |||||||||:!!|||.!!||| !|||::!| ++{e}TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgV 1233449 : ........ag{A}TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAG : 1233339 312 : alPheTyrLeuMetGlnValArgSerAsnLysProCysIleLeuThrAlaAlaGly : 329 ||.!!||| !||||||:!!|||:!! |||||||||:!!|||||||||!.!||| alIleTyrThrMetGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGly 1233338 : TAATTTACACGATGCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGA : 1233285 330 : MetTyrGluMetAsnIleGluSerPheGlyIleValArg : 342 :!!||||||||||||!!:|||!:!|||!.!! !|||||| LeuTyrGluMetAsnMetGluAsnPheAlaAsnValArg 1233284 : TTGTATGAAATGAACATGGAGAACTTTGCAAACGTTCGT : 1233244 vulgar: gi|815897156|ref|XP_012249339.1| 219 342 . KQ414851.1 1233762 1233243 - 357 M 31 93 5 0 2 I 0 76 3 0 2 M 45 135 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233244 1233762 357 - . gene_id 2 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233670 1233762 . - . KQ414851.1 exonerate:protein2genome:local exon 1233670 1233762 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233668 1233669 . - . intron_id 1 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1233590 1233669 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233590 1233591 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233453 1233589 . - . KQ414851.1 exonerate:protein2genome:local exon 1233453 1233589 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233451 1233452 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233383 1233452 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1233383 1233384 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233244 1233382 . - . KQ414851.1 exonerate:protein2genome:local exon 1233244 1233382 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233244 1233762 357 - . alignment_id 2 ; Query gi|815897156|ref|XP_012249339.1| ; Align 1233763 220 93 ; Align 1233590 251 135 ; Align 1233382 297 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 264 Query range: 93 -> 181 Target range: 1229488 -> 1229224 94 : ThrLeuLeuIleAlaLeuValIlePheLeuSerLeuProLeuTyrAsnProValLe : 112 .!!||||||.!!|||:!! !:!!|||||| !:!!||||||!:!..!|||!.!|| AlaLeuLeuPheAlaMetCysValPheLeuLeuValProLeuPheGlyProAlaLe 1229488 : GCTTTACTCTTCGCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCT : 1229434 113 : uAspIleIleIleProLeuAsnGluThrArgGlnArgAsnAsnValPheGlnValH : 131 |||||||:!!:!!|||! !||||||||||||! !|||.!..!.:!!|||::!|||: uAspIleValLeuProSerAsnGluThrArgProArgGlnGlnLeuPheArgValA 1229433 : GGACATCGTCCTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTA : 1229377 132 : isTyrGlyValLeuAspAsnGluGluHisPheTyrIleValTyrValHisLeuSer : 149 !!||| !:!!!!!|||.!.! !!!::!!|||!:! !||||||:!!!!.|||! ! snTyrIleIlePheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPhe 1229376 : ACTATATAATTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTT : 1229323 150 : LeuCysAlaIleIleIleValValThrIleIleSerValAspSerLeuTyrIleTh : 168 ! !|||.!!|||:!!:!!|||:!!.!!||||||!!!|||||||||||||||!!:! TrpCysThrIleValLeuValMetAlaIleIleThrValAspSerLeuTyrMetIl 1229322 : TGGTGTACAATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGAT : 1229266 169 : rIleIleTyrHisAlaCysGlyLeuPheAlaValCysGly : 181 !||||||||||||||| !!|||:!!||||||:!!|||||| eIleIleTyrHisAlaSerGlyMetPheAlaIleCysGly 1229265 : CATAATTTACCATGCCAGCGGAATGTTCGCTATATGCGGG : 1229225 vulgar: gi|815897156|ref|XP_012249339.1| 93 181 . KQ414851.1 1229488 1229224 - 264 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229488 264 - . gene_id 3 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229225 1229488 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229488 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229488 264 - . alignment_id 3 ; Query gi|815897156|ref|XP_012249339.1| ; Align 1229489 94 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 240 Query range: 89 -> 181 Target range: 1234335 -> 1234059 90 : LeuTyrArgArgThrLeuLeuIleAlaLeuValIlePheLeuSerLeuProLeuTy : 108 !!!!:! ! !||||||||| ! !:!!|||:!!|||||| !:!!|||||| PhePheSerAspThrLeuLeuSerPheMetValValPheLeuLeuValProLeuVa 1234335 : TTCTTCTCAGATACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGT : 1234281 109 : rAsnProValLeuAspIleIleIleProLeuAsnGluThrArgGlnArgAsnAsnV : 127 ! !||| !!||||||:!!:!!:!!||||||||||||||||||! !|||.!..!.! lPheProPheLeuAspValValLeuProLeuAsnGluThrArgProArgGlnGlnG 1234280 : TTTTCCATTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAG : 1234224 128 : alPheGlnValHisTyrGlyValLeuAspAsnGluGluHisPheTyrIleValTyr : 145 !|||::!|||:!!||| ! !!!!|||.!.! !!!::!!|||!:!! !|||||| lyPheArgValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyr 1234223 : GATTCAGAGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTAC : 1234170 146 : ValHisLeuSerLeuCysAlaIleIleIleValValThrIleIleSerValAspSe : 164 !!!!.|||:!!! ! !!|||:!!:!!:!!|||:!!! !||||||!!!|||||||| PheGlnLeuAlaTrpGlyAlaValValValValMetIleIleIleThrValAspSe 1234169 : TTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTC : 1234113 165 : rLeuTyrIleThrIleIleTyrHisAlaCysGlyLeuPheAlaValCysGly : 181 |||||||!!:! !||||||:!!|||||| !!|||:!!||||||||||||||| rLeuTyrMetIleIleIleHisHisAlaSerGlyMetPheAlaValCysGly 1234112 : GTTGTACATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTGTGCGGG : 1234060 vulgar: gi|815897156|ref|XP_012249339.1| 89 181 . KQ414851.1 1234335 1234059 - 240 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234335 240 - . gene_id 4 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234335 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234335 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234335 240 - . alignment_id 4 ; Query gi|815897156|ref|XP_012249339.1| ; Align 1234336 90 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 222 Query range: 93 -> 181 Target range: 1243860 -> 1243599 94 : ThrLeuLeuIleAlaLeuValIlePheLeuSerLeuProLeuTyrAsnProValLe : 112 ||||||!!! ! !! !:!!||||||:!!! !!!!|||||| ! |||:!!|| ThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleLe 1243860 : ACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATT : 1243806 113 : uAspIleIleIleProLeuAsnGluThrArgGlnArgAsnAsnValPheGlnValH : 131 ||||:!!:!! !||||||||||||||||||...|||! ...|||...::::::. uAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuG 1243805 : GGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgc : 1243749 132 : isTyrGlyValLeuAspAsnGluGluHisPheTyrIleValTyrValHisLeuSer : 149 ..||| :!!!!!|||! |||::::::|||||| :::||||||:!! !.!! lnTyr---LeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGly 1243748 : aatac---cTGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGC : 1243698 150 : LeuCysAlaIleIleIleValValThrIleIleSerValAspSerLeuTyrIleTh : 168 ! !|||:!!.!!!!:! !:!!:!!..!||||||!!!:!!|||:!!||||||:!:.. TrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValVa 1243697 : TGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGT : 1243641 169 : rIleIleTyrHisAlaCysGlyLeuPheAlaValCysGly : 181 !||||||:!!|||.!!|||||||||||||||||||||||| lIleIleHisHisThrCysGlyLeuPheAlaValCysGly 1243640 : AATCATTCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: gi|815897156|ref|XP_012249339.1| 93 181 . KQ414851.1 1243860 1243599 - 222 M 39 117 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243860 222 - . gene_id 5 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243860 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243860 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243860 222 - . alignment_id 5 ; Query gi|815897156|ref|XP_012249339.1| ; Align 1243861 94 117 ; Align 1243744 134 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 212 Query range: 88 -> 191 Target range: 1240100 -> 1239791 89 : TyrLeuTyrArgArgThrLeuLeuIleAlaLeuValIlePheLeuSerLeuProLe : 107 |||! ! ! ! !..!|||!!! ...||| ||||||||| !:!!|||:: TyrTyrIleSerValValLeuPheSerValLeuPheIlePheLeuValValProIl 1240100 : TATTACATTTCAGTCGTTTTATTTTCcgttttgttcatttttctggTGGTTCcgat : 1240046 108 : uTyrAsnProValLeuAspIleIleIleProLeuAsnGluThrArgGlnArgAsnA : 126 :::: |||:::|||||||||:!!! !|||||||||||||||||| !|||.... ePheProProLeuLeuAspIleLeuLysProLeuAsnGluThrArgAlaArgGlnL 1240045 : ttttcctcctcttctggACATTTTAAAACCTTTAAACGAAACCCGAGCACgccaga : 1239989 127 : snValPheGlnValHisTyrGlyValLeuAspAsnGluGluHisPheTyrIleVal : 144 ..:::|||:::|||::!||| !:!!:!!|||!..!!:|||!!. ! |||..! ysIlePheLysValAsnTyrLeuIleIleAspArgAspGluGlnAlaLeuIleThr 1239988 : aaatattcaaagttaaTTACCTGATCATTGACAGGGATGAACAAGCTCTGATCACA : 1239935 145 : TyrValHisLeuSerLeuCysAlaIleIleIleValValThrIleIleSerValAs : 163 ||| !!|||||||||! ! .!!|||! !:!!! !:!!:!!:!::!!||| !!! TyrPheHisLeuSerTrpThrThrIleThrLeuGlyIleSerValLeuSerSerGl 1239934 : TATTTTCACTTGTCTTGGACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGA : 1239878 164 : pSerLeuTyrIleThrIleIleTyrHisAlaCysGlyLeuPheAlaValCysGlyS : 182 :! !:!!|||:!! !:!!|||:!!|||.!! !!|||||||||||||||..!||| uLeuIleTyrValLeuLeuIleHisHisThrSerGlyLeuPheAlaValAlaGly* 1239877 : ATTGATATACGTCCTTCTTATTCATCATACCAGCGGTCTGTTTGCTGTGGCTGggt : 1239821 183 : erGlnIleGlnLysThrAlaGluAsnAsn : 191 ...::: |||..!... ||| **IlePheLysHisThrCysAsnIleAsn 1239820 : aaatattcaaacataCCTGTAacataaac : 1239792 vulgar: gi|815897156|ref|XP_012249339.1| 88 191 . KQ414851.1 1240100 1239791 - 212 M 103 309 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239792 1240100 212 - . gene_id 6 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239792 1240100 . - . KQ414851.1 exonerate:protein2genome:local exon 1239792 1240100 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239792 1240100 212 - . alignment_id 6 ; Query gi|815897156|ref|XP_012249339.1| ; Align 1240101 89 309 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 185 Query range: 219 -> 297 Target range: 1228927 -> 1228614 220 : GlnLeuTyrAspValLeuGluLysCysCysArgAsnLeuTyrLeuIleThrMetVa : 238 ::!!!!||||||:!!|||.!.:!! !! !!|||||| !||||||:!! !:!:! ArgPheTyrAspIleLeuAsnGluSerSerArgAsnSerTyrLeuLeuGlnValGl 1228927 : AGGTTTTACGATATTCTAAACGAGAGCAGTCGAAACAGCTACTTGCTTCAGGTTGG : 1228873 239 : lLeuAsnAlaIleIleLeuSerValThrAlaValGlu >>>> Target Intro : 251 !|||!:! !!!:! !:!!|||||||||||||||:!! 79 bp yLeuSerMetMetSerIleSerValThrAlaValGln+- 1228872 : ATTGAGCATGATGAGCATCAGCGTGACTGCTGTGCAGgc................. : 1228832 252 : n 1 >>>> ValIleValPheLeuAspArgProAlaGluAlaIleArgAlaIleV : 266 :!!!!::!! !||||||||||||::!|||||||||||| ! !| ++IleMetLeuAlaLeuAspArgProSerGluAlaIleArgTyrSerV 1228831 : ........agATAATGCTCGCCCTGGATAGACCGAGCGAAGCTATTAGATATTCTG : 1228710 267 : alTyrLeuIleAlaGluGlnPheHisLeuTyrMetPheSerLeuProGlyGlnThr : 284 || !||| !!.!! !||||||||||||!:!!!:.!!|||||||||||||||||| alValLeuGlyGlyAlaGlnPheHisLeuPheIleIleSerLeuProGlyGlnThr 1228709 : TGGTTCTTGGAGGTGCGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACA : 1228656 285 : LeuLeuAspGlnSerValGluLeuSerAsnLysIleTyr : 297 |||:!!|||!!.!!!..! !|||!!!||| ! !!:||| LeuValAspHisCysThrMetLeuThrAsnAspMetTyr 1228655 : CTCGTGGATCATTGTACCATGCTAACGAACGATATGTAC : 1228615 vulgar: gi|815897156|ref|XP_012249339.1| 219 297 . KQ414851.1 1228927 1228614 - 185 M 31 93 5 0 2 I 0 75 3 0 2 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228615 1228927 185 - . gene_id 7 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1228835 1228927 . - . KQ414851.1 exonerate:protein2genome:local exon 1228835 1228927 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228833 1228834 . - . intron_id 1 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1228756 1228834 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1228756 1228757 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228615 1228755 . - . KQ414851.1 exonerate:protein2genome:local exon 1228615 1228755 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228615 1228927 185 - . alignment_id 7 ; Query gi|815897156|ref|XP_012249339.1| ; Align 1228928 220 93 ; Align 1228756 251 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 177 Query range: 296 -> 344 Target range: 1222505 -> 1222361 297 : TyrAspSerAspTrpTyrLysIleProThrLysAlaGlnLysValPheTyrLeuMe : 315 |||! !||| ! ||||||:!!:!!|||..!|||!.!||||||:!!.!!||| !|| TyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTyrThrMe 1222505 : TACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTACACGAT : 1222451 316 : tGlnValArgSerAsnLysProCysIleLeuThrAlaAlaGlyMetTyrGluMetA : 334 ||||:!!||||||! ::!||||||||||||||||||!.!|||:!!:!!||||||| tGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisGluMetA 1222450 : GCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATGAGATGA : 1222394 335 : snIleGluSerPheGlyIleValArgAsnAsn : 344 ||||||||||||||||||||||| !!|||||| snIleGluSerPheGlyIleValCysAsnAsn 1222393 : ACATCGAGAGTTTCGGAATAGTATGTAATAAT : 1222362 vulgar: gi|815897156|ref|XP_012249339.1| 296 344 . KQ414851.1 1222505 1222361 - 177 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222362 1222505 177 - . gene_id 8 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1222362 1222505 . - . KQ414851.1 exonerate:protein2genome:local exon 1222362 1222505 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222362 1222505 177 - . alignment_id 8 ; Query gi|815897156|ref|XP_012249339.1| ; Align 1222506 297 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 168 Query range: 296 -> 343 Target range: 1228545 -> 1228404 297 : TyrAspSerAspTrpTyrLysIleProThrLysAlaGlnLysValPheTyrLeuMe : 315 |||..!||| |||||||||:!! !!.!!||| !|||::!|||.!!|||:!!|| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 316 : tGlnValArgSerAsnLysProCysIleLeuThrAlaAlaGlyMetTyrGluMetA : 334 ||||:!!|||:!! |||||||||||||||||||||!.!|||:!!|||||||||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 335 : snIleGluSerPheGlyIleValArgAsn : 343 ||!!:|||!:!|||!.!! !||||||||| snMetGluAsnPheAlaAsnValArgAsn 1228433 : ACATGGAGAACTTTGCAAACGTTCGTAAC : 1228405 vulgar: gi|815897156|ref|XP_012249339.1| 296 343 . KQ414851.1 1228545 1228404 - 168 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228405 1228545 168 - . gene_id 9 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228405 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228405 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228405 1228545 168 - . alignment_id 9 ; Query gi|815897156|ref|XP_012249339.1| ; Align 1228546 297 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 154 Query range: 296 -> 344 Target range: 1242796 -> 1242652 297 : TyrAspSerAspTrpTyrLysIleProThrLysAlaGlnLysValPheTyrLeuMe : 315 |||:!!||| ||||||:!!! !|||..! ! !||||||:!!.!!:!!:!!:! TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIleVa 1242796 : TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATATAGT : 1242742 316 : tGlnValArgSerAsnLysProCysIleLeuThrAlaAlaGlyMetTyrGluMetA : 334 :|||:!!||||||..!|||||||||! !|||..!|||!.!|||:!:|||||||||| lGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluMetA 1242741 : ACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAATGA : 1242685 335 : snIleGluSerPheGlyIleValArgAsnAsn : 344 ||||||||!:!|||||| !|||||| ||| snIleGluAsnPheGlySerValArgValAsn 1242684 : ACATTGAGAATTTTGGATCAGTACgtgttaat : 1242653 vulgar: gi|815897156|ref|XP_012249339.1| 296 344 . KQ414851.1 1242796 1242652 - 154 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242653 1242796 154 - . gene_id 10 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1242653 1242796 . - . KQ414851.1 exonerate:protein2genome:local exon 1242653 1242796 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242653 1242796 154 - . alignment_id 10 ; Query gi|815897156|ref|XP_012249339.1| ; Align 1242797 297 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815902073|ref|XP_003486905.2| PREDICTED: odorant receptor 49b-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 373 -> 423 Target range: 301886 -> 302036 374 : IleGlyHisAlaGlyTyrSerMetProTrpTyrArgTyrProCysAsnLeuArgAsnP : 393 |||||| |||..!|||..!!!: !||||||!.!! |||...!!. ! ! !! IleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrA 301887 : ATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACG : 301944 394 : roValAsnMetLeuLeuIleArgGlyGlnLysProValArgLeuThrAlaGlyLysPh : 412 !:!!! !:!:||| !:!:! !..!||| ! ||| !!:!|||||||||||||||.! spLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGlyLysIl 301945 : ATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAAT : 302001 413 : eIleGluLeuSerLeuGlyThrPheAlaSerMet : 423 .|||!!:|||||||||..!||||||::!|||:!: eIleAspLeuSerLeuAsnThrPheSerSerVal 302002 : AATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: gi|815902073|ref|XP_003486905.2| 373 423 . KQ414889.1 301886 302036 + 109 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301887 302036 109 + . gene_id 1 ; sequence gi|815902073|ref|XP_003486905.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301887 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301887 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301887 302036 109 + . alignment_id 1 ; Query gi|815902073|ref|XP_003486905.2| ; Align 301887 374 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893781|ref|XP_012250080.1| PREDICTED: odorant receptor 67c-like isoform X1 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1449 Query range: 0 -> 389 Target range: 194108 -> 196813 1 : MetSerGluLysIleGlyAsnSerThrAsnTyrArgAsnValHisTyrGluAlaAspA : 20 ||| !|||:::|||.........:::|||||||||||||||:!!|||:!! !|||. MetValGluGluIleAlaLysLysSerAsnTyrArgAsnValAsnTyrLysLeuAspT 194109 : ATGGTCgaagaaatcgcgaagaaatcgAATTACCGCAACGTCAATTACAAATTGGACA : 194166 21 : laGluTyrThrIleHisIleAlaLysThrLeuLeuLysLeuIleGlyIleTrpProAr : 39 !!||||||.!!:!!!..:!!||||||.!!||||||! !! !||||||||||||||||| hrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProAr 194167 : CCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAAG : 194223 40 : gArgAspThrPheLeuAspAsnValLysMetTyrIleGlnThrThrIleValPheSer : 58 |..!|||:!!.!!! !|||!..|||::!:!!!:! !|||||| !:!:||||||:!! gGluAspSerLeuArgAspArgValArgLeuPheAlaGlnThrGlyValValPheAla 194224 : GGAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTTCGCT : 194280 59 : LeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCysGluAsnL : 78 ||||||||||||||||||||||||||||||||||||||||||||||||||||||:!!| LeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCysGluAspL 194281 : TTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAGGATC : 194340 79 : euThrLysTyrMetLysValIleAlaAlaGlnIlePheSerLeuLeuAlaValIleLy : 97 |||||!:!||||||||||||||||||||||||:!:|||||||||||||||:!!||||| euThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleIleLy 194341 : TGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCATCAA : 194397 98 : sPheTrpThrValIlePheAsnArgLysGluIleArgPheCysLeuAspGlnIleGlu : 116 ||||||||||:!!||| ! ||||||||||||||||||||||||||| :!!!!:||| sPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGluMetGlu 194398 : GTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGATGGAG : 194454 117 : IleGlnTyrArgAspValLysCysGluGluAspArgLeuValMetThrAsnCysAlaL : 136 ! |||||||||||||||:!!|||||||||||||||! !||||||||||||||||||| ThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsnCysAlaL 194455 : ACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGCGCGA : 194514 137 : ysIleGlyArgPhePheThrMetMetTyrLeuSerLeuSerTyrThrGlyAlaLeuPr : 155 ||||||||||||||||||||! :!!||||||.!!||||||||| !||||||||||| ysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaLeuPr 194515 : AAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTTTGCC : 194571 156 : oTyrHisIleIleLeuProLeuIleSerGluArgIleValLysAlaAspAsnThrThr : 174 ||||||||||||||||||||||!!:||||||||||||||||||! !||||||!:!||| oTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGluAspAsnSerThr 194572 : GTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAACAGTACT : 194628 175 : GlnIleProLeuProTyrLeuSerAspTyrIlePhePheThrValGluAsnSerProI : 194 ||||||||||||||||||||||||:!!|||:!!||||||.!!:!!|||:!!||||||| GlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAspSerProI 194629 : CAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGACTCGCCGA : 194688 195 : leTyrGluIleThrPheValLeuGlnIlePheIleSerSerIleIleLeuSerThrAs : 213 ||||||||||||||||||||! !||||||.!.|||||||||||||||||||||||||| leTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuSerThrAs 194689 : TTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGTCGACGAA : 194745 214 : nCysGlyIleTyrSerLeuIleAlaSerIleThrMetHisCysCysGlyLeuPheGlu : 232 |||||||||||||||||||:!!|||!!!|||! !|||||||||||||||||||||||| nCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGlyLeuPheGlu 194746 : TTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTTGTTCGAA : 194802 233 : ValThrSerArgArgIleGluThrLeuHisLysTrpAsnLysCysAspLeuHisAspA : 252 |||||||||||||||!!:||||||:!! ! ! !.! ! |||:!!!..! !| ValThrSerArgArgMetGluThrIleSerValProThrGlyLysAspIleArgGlyA 194803 : GTGACCAGCAGAAGGATGGAGACTATTTCTGTGCCCACTGGGAAGGATATTCGGGGTA : 194862 253 : rgValValAspIleValGlnTyrHisLeuGluAlaIle{Gl} >>>> Target In : 265 ||:!! !|||:!!||||||!:!||||||:!!||||||{ } 1391 rgLeuArgAspValValGlnPheHisLeuLysAlaIle{Ly}++ 194863 : GACTTAGGGACGTCGTTCAGTTTCATCTGAAAGCAATT{AA}gt.............. : 194905 266 : tron 1 >>>> {y}TyrSerAlaLeuIleGlyLysSerLeuSerIleValPheLeu : 279 bp {!}::!:!!! !:!!|||! !|||:!!|||!:!|||||||||||| ++{s}PheAlaGluMetIleGluLysAlaLeuAsnIleValPheLeu 194906 : ...........ag{a}tTCGCTGAAATGATCGAGAAAGCACTGAACATCGTGTTTCTA : 196334 280 : SerGluMetValGlyCysThrIleIleIleCysPheLeuGluPheGlyValIleMet : 299 |||||||||:!!||||||||||||||||||||||||||||||!:!|||||||||:!! SerGluMetLeuGlyCysThrIleIleIleCysPheLeuGluTyrGlyValIleVal+ 196335 : TCAGAGATGCTTGGCTGCACTATCATCATATGTTTCCTGGAATACGGTGTAATCGTGg : 196394 300 : >>>> Target Intron 2 >>>> GluTrpGluAspHisLysThrLeuSerThr : 308 65 bp !!:|||! ||||||||||||||||||! ! + ++AspTrpAlaAspHisLysThrLeuSerMet 196395 : t.........................agGATTGGGCCGATCACAAGACACTCAGCATG : 196486 309 : LeuThrTyrPheValLeuMetThrSerIlePheValAsnValPheIleIleSerPheI : 328 :!!||||||||||||||||||||||||||||||||||||||||||||||||||||||| MetThrTyrPheValLeuMetThrSerIlePheValAsnValPheIleIleSerPheI 196487 : ATGACGTACTTCGTTCTGATGACATCGATATTCGTGAACGTGTTCATAATCTCGTTCA : 196546 329 : leGlyAspArgLeuLysGlnGlu >>>> Target Intron 3 >>>> SerGlu : 337 ||||||||||||||||||||! 82 bp |||||| leGlyAspArgLeuLysGlnVal++ ++SerGlu 196547 : TCGGTGATCGTCTTAAACAAGTggt.........................agAGCGAA : 196655 338 : ArgIleGlyGluThrSerTyrPheLeuProTrpTyrAspPheProValAspValAlaL : 357 |||:!!||||||||||||||||||:!!||||||||||||.!!|||! !|||:!!|||| ArgValGlyGluThrSerTyrPheMetProTrpTyrAspLeuProAspAspLeuAlaL 196656 : AGAGTAGGCGAAACGTCGTACTTCATGCCGTGGTACGATCTTCCGGACGATTTAGCCA : 196715 358 : ysAsnIleAsnThrIleMetLeuArgThrArgLeuProSerCysLeuSerGlyAlaAs : 376 ||||||||!..||||||!!:||||||.!!!!!! !|||||| !!||||||||||||!! ysAsnIleArgThrIleIleLeuArgAlaSerHisProSerSerLeuSerGlyAlaLy 196716 : AGAATATAAGAACGATCATACTAAGAGCCAGTCATCCGTCAAGTTTGTCTGGCGCCAA : 196772 377 : nIleLeuGluIleSerLeuGlnAlaPheCysAspValSer : 389 .:!:!!!!!::!!||||||||||||||||||||||||||| sLeuPheAspLeuSerLeuGlnAlaPheCysAspValSer 196773 : GTTGTTCGATCTTTCGCTTCAAGCATTTTGCGACGTGAGT : 196813 vulgar: gi|815893781|ref|XP_012250080.1| 0 389 . KQ414889.1 194108 196813 + 1449 M 264 792 S 0 2 5 0 2 I 0 1387 3 0 2 S 1 1 M 33 99 5 0 2 I 0 61 3 0 2 M 37 111 5 0 2 I 0 78 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194109 196813 1449 + . gene_id 1 ; sequence gi|815893781|ref|XP_012250080.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 194109 194902 . + . KQ414889.1 exonerate:protein2genome:local exon 194109 194902 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 194903 194904 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 194903 196293 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 196292 196293 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 196294 196393 . + . KQ414889.1 exonerate:protein2genome:local exon 196294 196393 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 196394 196395 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 196394 196458 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 196457 196458 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 196459 196569 . + . KQ414889.1 exonerate:protein2genome:local exon 196459 196569 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 196570 196571 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 196570 196651 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 196650 196651 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 196652 196813 . + . KQ414889.1 exonerate:protein2genome:local exon 196652 196813 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194109 196813 1449 + . alignment_id 1 ; Query gi|815893781|ref|XP_012250080.1| ; Align 194109 1 792 ; Align 196295 266 99 ; Align 196459 299 111 ; Align 196652 336 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893781|ref|XP_012250080.1| PREDICTED: odorant receptor 67c-like isoform X1 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 181 Query range: 105 -> 264 Target range: 304386 -> 304866 106 : LysGluIleArgPheCysLeuAspGlnIleGluIleGlnTyrArgAspValLysCysG : 125 |||...::: !||| ! ! !! .!.:!!...! ! !|||..!.!.|||:!!! ! LysArgLeuValPheArg***GlyAspLeuSerThrGlyTyrGluGlnValGluSerL 304387 : aaacgtttaGTGTTTCGATAAGGGGATCTCTCTACTGGATATGAACAGGTGGAATCTC : 304444 126 : luGluAspArgLeuValMetThrAsnCysAlaLysIleGlyArgPhePheThrMetMe : 144 ..!|||||| !:!!||| !!!.! !!.!:!!!!:|||||| !.!.|||!!:!! euArgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIl 304445 : TCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAAT : 304501 145 : tTyrLeuSerLeuSerTyrThrGlyAlaLeuProTyrHisIleIleLeuProLeuIle : 163 :! ! !! !!!!! !|||||||||!.! ! !||||||! :!!:!!! !!!! eCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheAla 304502 : CTGCGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCG : 304558 164 : SerGluArgIleValLysAlaAspAsnThrThrGlnIleProLeuProTyrLeuSerA : 183 !!!! !! ! !||| ! ! ! !!||| !||| ! !|||||| !|||! !!!! ThrGlyThrTyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProThrT 304559 : ACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACCT : 304618 184 : spTyrIlePhePheThrValGluAsnSerProIleTyrGluIleThrPheValLeuGl : 202 !! ! !!!.||| !|||:!!!..|||||||||||||||:!:..!!:! !!:!!!! yrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheValHi 304619 : ACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCA : 304675 203 : nIlePheIleSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuIleAla : 221 . !.!. !.!!! !:!!|||! !|||! !!.!..!||| !! !.!!||| !||| sCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAla 304676 : TTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCT : 304732 222 : SerIleThrMetHisCysCysGlyLeuPheGluValThrSerArgArgIle<->GluT : 240 !.!!.!!! |||..!||||||! !.!!!!::!!..!! ! !|||:!: !!: LeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAspL 304733 : CTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGATC : 304792 241 : hrLeuHisLysTrpAsnLysCysAspLeuHisAspArgValValAspIleValGlnTy : 259 !:!!:!!!.. .!...!! !|||||| !! ! |||:!!:!!!!:||||||:!!:! euValAsnSerLysGluSerSerAspLeuAspLysArgLeuIleGluIleValGluHi 304793 : TTGTCAACAGCAAAGAATCATCTGATTTAGATAAACGATTAATAGAAATTGTTGAGCA : 304849 260 : rHisLeuGluAlaIle : 264 !||||||..! !:!! sHisLeuArgIleLeu 304850 : TCATTTGCGAATTTTA : 304866 vulgar: gi|815893781|ref|XP_012250080.1| 105 264 . KQ414889.1 304386 304866 + 181 M 133 399 G 0 3 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304387 304866 181 + . gene_id 2 ; sequence gi|815893781|ref|XP_012250080.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304387 304866 . + . KQ414889.1 exonerate:protein2genome:local exon 304387 304866 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304387 304866 181 + . alignment_id 2 ; Query gi|815893781|ref|XP_012250080.1| ; Align 304387 106 399 ; Align 304789 239 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893781|ref|XP_012250080.1| PREDICTED: odorant receptor 67c-like isoform X1 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 12 -> 233 Target range: 274356 -> 275028 13 : AsnValHisTyrGluAlaAspAlaGluTyrThrIleHisIleAlaLysThrLeuLeuL : 32 !.!!.!:!!!:!!!:::! !::!!!:|||!:!:!:!!.:!: !::! !!!!|||| ThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuL 274357 : ACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGA : 274414 33 : ysLeuIleGlyIleTrpProArgArgAsp<-><->ThrPheLeuAspAsnValLysMe : 49 ||! !|||||| |||||| ! !... ||| !!!!!:...:!! ysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLeuSe 274415 : AGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTC : 274471 50 : tTyrIleGlnThrThrIleValPheSerLeuMetCysPheLeuLeuValProHisVal : 68 :!!::: ::: ::!!!!!!!!!: !! ! !:!!:!!||| !:!! rHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIle 274472 : ACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATA : 274528 69 : IleTyrThrTyrPheAspCysGluAsnLeuThrLysTyrMetLysValIleAlaAlaG : 88 .!!:!!! ! .!.! !|||!:!||| ! ! ! :!!|||:!!:!!!.! !!! PheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProL 274529 : TTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTC : 274588 89 : lnIlePheSerLeuLeuAlaValIleLysPheTrpThrValIlePheAsnArgLysGl : 107 ! !!!!!!!:!!!.!! !|||!!.!:! |||:!!:!:.!...!!!!||||| euGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGl 274589 : TCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGA : 274645 108 : uIleArgPheCysLeuAspGlnIleGluIleGlnTyrArgAspValLysCysGluGlu : 126 ||||||| !|||:!!!!:!!.!!::!!! !.!.!::||| !|||! ! !||| uIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGlu 274646 : GATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAG : 274702 127 : AspArgLeuValMetThrAsnCysAlaLysIleGlyArgPhePheThrMetMetTyrL : 146 |||!:!! !|||||| !!!. !|||||||||||||||!:! !!.!!!!:.!.! ! AspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysA 274703 : GATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTG : 274762 147 : euSerLeuSerTyrThrGlyAlaLeuProTyrHisIleIleLeuProLeuIleSerGl : 165 !:!!!!!! ! ! !|||!.!||| !||| !:!:||| ! !!!!!! !! !:! laAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGl 274763 : CGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCA : 274819 166 : uArgIleValLysAlaAspAsnThrThrGlnIle<->ProLeuProTyrLeuSerAsp : 183 !! !:!! ! !!.!:!!.!.|||! ! :!: !||||||! ! !:!! !! nThrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyr 274820 : GACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTAC : 274876 184 : TyrIlePhePheThrValGluAsnSerProIleTyrGluIleThrPheValLeuGlnI : 203 ! ! .!! !!.!!|||!!:!..||||||! !!||||||..!.!!!.!! !|||. LysLysIleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnP 274877 : AAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAAT : 274936 204 : lePheIleSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuIleAlaSe : 222 !! ! .!!! !|||:!: !|||!:! !||| !!:!|||||| !||| heValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaVa 274937 : TCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGT : 274993 223 : rIleThrMetHisCysCysGlyLeuPheGluVal : 233 !.!!.!! |||..!! !|||! !!!....||| lPheAlaAlaHisAlaTyrGlyGlnLeuSerVal 274994 : GTTCGCGGCACACGCTTACGGCCAGTTGAGCGTG : 275028 vulgar: gi|815893781|ref|XP_012250080.1| 12 233 . KQ414889.1 274356 275028 + 171 M 29 87 G 0 6 M 135 405 G 0 3 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274357 275028 171 + . gene_id 3 ; sequence gi|815893781|ref|XP_012250080.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274357 275028 . + . KQ414889.1 exonerate:protein2genome:local exon 274357 275028 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274357 275028 171 + . alignment_id 3 ; Query gi|815893781|ref|XP_012250080.1| ; Align 274357 13 87 ; Align 274450 42 405 ; Align 274858 177 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893781|ref|XP_012250080.1| PREDICTED: odorant receptor 67c-like isoform X1 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 262 -> 335 Target range: 210489 -> 210774 263 : AlaIleGlyTyrSerAlaLeuIleGlyLysSerLeuSerIleValPheLeuSerGluM : 282 ..!.!!.!!!:!! !||||||! !! !!!. !||| ! :!!! |||! !|||| CysPheSerPheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGluM 210490 : TGTTTCAGTTTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAA : 210547 283 : etValGlyCysThrIleIleIleCysPheLeuGluPheGlyValIleMet >>>> T : 299 ||||||||||||||:!:! !!!:|||||||||! !:! !..!!!:!!: etValGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210548 : TGGTGGGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt...... : 210600 300 : arget Intron 1 >>>> GluTrpGluAspHisLysThrLeuSerThrLeuThrT : 311 66 bp ||||||!!:..! ! ! !!:!!|||!:!||||||| ++GluTrpAspSerLysAspProIleSerSerLeuThrT 210601 : ...................agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGT : 210700 312 : yrPheValLeuMetThrSerIlePheValAsnValPheIleIleSerPheIleGlyAs : 330 ||.!.||||||:!:||||||:!! !!|||:!!||||||.!!!!!!:!||||||!! yrIleValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGl 210701 : ACATAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGA : 210757 331 : pArgLeuLysGlnGlu : 335 : !||| :!!:!: uValLeuAlaGluGln 210758 : AGTGTTGGCTGAACAg : 210774 vulgar: gi|815893781|ref|XP_012250080.1| 262 335 . KQ414889.1 210489 210774 + 138 M 36 108 5 0 2 I 0 62 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210490 210774 138 + . gene_id 4 ; sequence gi|815893781|ref|XP_012250080.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 210490 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210490 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210490 210774 138 + . alignment_id 4 ; Query gi|815893781|ref|XP_012250080.1| ; Align 210490 263 108 ; Align 210664 299 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1405 Query range: 7 -> 394 Target range: 289693 -> 292554 8 : AsnAspHisLeuGlnAsnSerHisTyrLysSerAspIleTyrHisThrPheGlnPheC : 27 !:!|||!.!! !..!|||..!!.!|||:!!!!!|||||| !:!!||||||:!!!!.| SerAspArgProSerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuC 289694 : AGCGATCGTCCGTCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTAT : 289751 28 : ysHisTrpIleLeuLysProLeuGlyIleTyrPhePheLeuHisAspHisValAsnLy : 46 ||||||||||||||||||||:!!|||!!:||| !|||:!! !..!!.!!.!!:!!: ysHisTrpIleLeuLysProIleGlyMetTyrProPheValPheSerArgAlaSerAr 289752 : GCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAG : 289808 47 : sPheGluLysIleValSerValLeuLeuIleIleIleCysCysSerIleLeuGlnPhe : 65 ! !|||::!! !.!|||||||||||||||:!::!!||||||||||||||||||||| gArgGluArgThrAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPhe 289809 : ACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTC : 289865 66 : ValIleValProPheGlyTyrTyrIleLeuPheTyrGluLysAspMetAsnMetLysI : 85 :!!||||||||||||.!!:!!:!!:!!|||||| !!!:!!.|||||||||! ! : IleIleValProPheSerHisHisValLeuPheSerAspAsnAspMetAsnThrPheV 289866 : ATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCG : 289925 86 : leLysPheLeuGlyProLeuAlaPheCysValThrAlaLeuPheLysTyrGlyTyrLe : 104 !!||| !||||||||||||.!!||||||:!!|||.!!!!!||||||||| !!|||!! alLysAsnLeuGlyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPh 289926 : TTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTT : 289982 105 : uGlyValLysSerSerGluLeuGlyArgCysValLysHisValLysLysAsnTrpLys : 123 !.!!:!!|||.!!|||! !:!!||||||||||||||||||:!!:!!!:!:!!|||||| eSerMetLysGlySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLys 289983 : CAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAG : 290039 124 : MetLeuGlnAspLysAspHisArgAlaIleMetValArgTyrValThrMetGlyArgA : 143 ||||||!::|||:!!|||||||||!.!||||||:!!|||||||||||||||.!!|||| MetLeuArgAspGluAspHisArgValIleMetLeuArgTyrValThrMetSerArgA 290040 : ATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGA : 290099 144 : snLeuIleThrLeuCysAlaAlaPheMetTyrThrGlyGlyLeuSerTyrHisThrIl : 162 ||||||||! !||||||||| !|||:!!|||! !|||||||||||||||:!!|||:! snLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrVa 290100 : ATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGT : 290156 163 : eMetProLeuLeuSerLysLysLysIleAsnGluAsnIleThrIleArgProLeuThr : 181 !!!:||||||!!!|||||||||!..:!:|||! |||:!:|||||||||||||||||| lIleProLeuPheSerLysLysSerValAsnGlyAsnValThrIleArgProLeuThr 290157 : CATACCGTTGTTCTCGAAGAAGAGCGTGAACGGTAACGTGACTATCAGACCTCTAACT : 290213 182 : TyrProGlyTyrGluAlaPhePheAspIleGlnGluSerProThrTyrGluIleValT : 201 |||||||||||||||! !|||||||||:!!|||:!!||||||.!!||||||||||||! TyrProGlyTyrGluGluPhePheAspValGlnLysSerProAlaTyrGluIleValP 290214 : TATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCT : 290273 202 : yrCysMetHisCysValTyrValLeuIleThrGlyAsnIleThrMetAlaAlaTyrSe : 220 :!|||||||||||||||||||||:!!||||||!.!||||||||||||||||||||||| heCysMetHisCysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSe 290274 : TCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAG : 290330 221 : rLeuThrAlaIlePheThrThrHisAlaCysGlyGlnIleLysIleGlnThrLeuArg : 239 |||||||.!!||||||.!!||||||.!!|||||||||||||||||||||||| !||| rLeuThrThrIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArg 290331 : TTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGG : 290387 240 : LeuGluAsnLeuArgLysAspGlyLysAlaLeuLysAsnGlyIleGluAspHisLeuA : 259 ||||||:!!|||! !||| |||! ! !|||:!!!!.|||:!:...|||!.!|||| LeuGluAspLeuThrLysArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuA 290388 : CTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGG : 290447 260 : laValIleValSerGluHisValGluIleLeu{Ar} >>>> Target Intron 1 : 270 |||||:!!||||||! |||||||||||||||{!:} 655 bp laValValValSerGlyHisValGluIleLeu{Ly}++ 290448 : CGGTTGTTGTGAGCGGTCACGTGGAGATCTTG{AA}gt.................... : 290484 271 : >>>> {g}PheThrLysAsnIleGluThrAlaLeuGlnGlyLeuPheLeuIleGlu : 286 {!}||||||!:!! ||||||!:!||||||!!.! !:!!|||||||||||| ++{s}PheThrArgMetIleGluSerAlaLeuHisGluIlePheLeuIleGlu 290485 : .....ag{A}TTCACGAGGATGATCGAAAGCGCGTTGCATGAAATATTCTTGATAGAA : 291183 287 : ValMetLeuSerThrLeuLeuIleCysLeuLeuGluTyrTyrCysMetMet >>>> : 304 |||!!::!!||||||:!!|||:!!||||||:!!|||||| !! |||||| ValIleValSerThrValLeuLeuCysLeuIleGluTyrLeuLeuMetMet++ 291184 : GTAATAGTATCCACTGTGTTACTATGCTTGATCGAATATCTCTTAATGATGgt..... : 291239 305 : Target Intron 2 >>>> GluTrpGluThrSerAspSerValAlaIleSerThr : 315 132 bp |||||||||!:!|||||||||:!!!.!|||! !||| ++GluTrpGluSerSerAspSerIleGlyIleLeuThr 291240 : ....................agGAATGGGAGAGTAGCGATTCGATCGGGATATTAACA : 291402 316 : TyrIleIleLeuLeuThrSerPheThrPheAsnIleLeuIleTyrCysTyrValGlyG : 335 |||:!!! !|||||||||||||||||||||||||||||||||!:!||||||||||||| TyrValThrLeuLeuThrSerPheThrPheAsnIleLeuIlePheCysTyrValGlyG 291403 : TACGTCACTCTCCTCACTTCTTTCACTTTCAACATACTGATATTCTGTTACGTTGGCG : 291462 336 : luLeuLeuLeuGlyGln >>>> Target Intron 3 >>>> GlySerGluIle : 344 ||||||||||||||||| 913 bp |||||||||||| luLeuLeuLeuGlyGln++ ++GlySerGluIle 291463 : AACTTCTTCTTGGACAGgt.........................agGGTAGTGAAATC : 292402 345 : AlaThrAlaLeuTyrAspIleGluTrpTyrAsnLeuProGlyArgLysAlaArgAspI : 364 ||| !|||! !||||||! !|||||||||||||||||| !!|||||||||||||||| AlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgArgLysAlaArgAspI 292403 : GCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGGCTCGTGACA : 292462 365 : leValLeuValLeuAlaIleSerLysTyrProLeuLysLeuThrAlaGlyLysIleLe : 383 ||||||||||||||||||||!!!|||:!!|||:!!|||||||||||||||||||||!! leValLeuValLeuAlaIleThrLysHisProIleLysLeuThrAlaGlyLysIlePh 292463 : TCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGGCAAAATATT : 292519 384 : uValLeuSerMetAsnThrPheGlyValValArg : 394 !|||||||||:!!||||||||||||!.!|||||| eValLeuSerLeuAsnThrPheGlyAlaValArg 292520 : CGTTCTCTCGTTGAACACTTTTGGCGCTGTACGT : 292554 vulgar: gi|815911888|ref|XP_012241385.1| 7 394 . KQ414889.1 289693 292554 + 1405 M 262 786 S 0 2 5 0 2 I 0 651 3 0 2 S 1 1 M 33 99 5 0 2 I 0 128 3 0 2 M 37 111 5 0 2 I 0 909 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289694 292554 1405 + . gene_id 1 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 289694 290481 . + . KQ414889.1 exonerate:protein2genome:local exon 289694 290481 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 290482 290483 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 290482 291136 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 291135 291136 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 291137 291236 . + . KQ414889.1 exonerate:protein2genome:local exon 291137 291236 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291237 291238 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291237 291368 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 291367 291368 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292554 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292554 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289694 292554 1405 + . alignment_id 1 ; Query gi|815911888|ref|XP_012241385.1| ; Align 289694 8 786 ; Align 291138 271 99 ; Align 291369 304 111 ; Align 292393 341 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 706 Query range: 127 -> 395 Target range: 300006 -> 302042 128 : LysAspHisArgAlaIleMetValArgTyrValThrMetGlyArgAsnLeuIleThrL : 147 ..!:!!||||||.!!||||||:!!|||||||||||||||.!!|||||||||! |||: SerAsnHisArgThrIleMetLeuArgTyrValThrMetSerArgAsnLeuThrThrV 300007 : TCGAATCATCGTACGATCATGTTGAGATACGTGACTATGAGCAGAAATCTGACGACCG : 300064 148 : euCysAlaAlaPheMetTyrThrGlyGlyLeuSerTyrHisThrIleMetProLeuLe : 166 !!||||||!.!|||:!:|||.!!||||||:!!||||||||||||:!:|||! !!!!|| alCysAlaValPheLeuTyrAlaGlyGlyMetSerTyrHisThrValMetGlnPheLe 300065 : TGTGCGCCGTGTTTCTTTACGCAGGTGGTATGTCGTATCACACGGTGATGCAGTTCTT : 300121 167 : uSerLysLysLysIle{As} >>>> Target Intron 1 >>>> {n}GluAsn : 174 ||||||| ! !:!! !{!.} 45 bp {.}|||||| uSerLysAspArgSer{Ar}-- ++{g}GluAsn 300122 : ATCGAAGGACAGAAGC{AG}cg.........................ag{G}GAGAAT : 300190 175 : IleThrIleArgProLeuThrTyrProGlyTyrGluAlaPhePheAspIleGlnGluS : 194 !||| !!:!||||||.!!||||||||||||!!: !|||.!!|||! !||| | TyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnThrS 300191 : TACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAACCA : 300250 195 : erProThrTyrGluIleValTyrCysMetHisCysValTyrValLeuIleThrGlyAs : 213 ||||||||||||||||||||::: ...|||||| !! !.!:!!|||! ! !|| erProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTyrAs 300251 : GTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTACAA : 300307 214 : nIleThrMetAlaAlaTyrSerLeuThrAlaIlePheThrThrHisAlaCysGlyGln : 232 |:!:|||! !|||||||||||||||.!!|||||||||..!|||||| !||||||||| nValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGlyGln 300308 : CGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGACAG : 300364 233 : IleLysIleGlnThrLeuArgLeuGluAsnLeuArgLysAspGlyLysAlaLeuLysA : 252 |||:!!||||||! ! !|||||||||:!!||| !!!: !!! !!.! !|||: IleGlnIleGlnMetAlaArgLeuGluAspLeu---ValGluArgThrGlyGluLysA 300365 : ATTCAGATACAGATGGCGAGATTGGAGGATCTG---GTGGAGAGGACGGGAGAGAAGG : 300421 253 : snGlyIleGluAspHisLeuAlaValIleValSerGluHisValGluIleLeu{Ar} : 270 !!! ! ! |||! !|||!.!||||||||| !!!!:||||||:!!:!!|||{||} spAspGlyProAspProLeuValValIleValArgAspHisValLysValLeu{Ar}+ 300422 : ACGACGGTCCTGATCCTTTGGTCGTTATCGTTCGAGATCACGTGAAGGTTTTA{AG}g : 300477 271 : >>>> Target Intron 2 >>>> {g}PheThrLysAsnIleGluThrAlaLeu : 279 140 bp {|}|||.!!||||||:!!||| !.!!||| + ++{g}PheAlaLysAsnValGluGluThrLeu 300478 : t.........................ag{A}TTTGCAAAGAACGTTGAGGAAACTTTG : 300642 280 : GlnGlyLeuPheLeuIleGluValMetLeuSerThrLeuLeuIleCysLeuLeuGluT : 299 !::! !!!!! !|||:!:|||:!!.!. !|||||||||:!!:!:||||||||||||| ArgAspPheCysLeuValGluIlePheGluSerThrLeuIleLeuCysLeuLeuGluT 300643 : CGTGACTTCTGCTTAGTGGAAATCTTCGAGTCCACGCTGATTTTGTGTTTGCTCGAAT : 300702 300 : yrTyrCysMetMet >>>> Target Intron 3 >>>> GluTrpGluThrSer : 308 ||||||||:!!:!! 970 bp ||||||:!!!.!||| yrTyrCysLeuVal++ ++GluTrpGlnAsnSer 300703 : ACTACTGTTTGGTGgt.........................agGAATGGCAAAATAGC : 301699 309 : AspSerValAlaIleSerThrTyrIleIleLeuLeuThrSerPheThrPheAsnIleL : 328 |||!!!:!!|||!!:! !|||!:!.!!! !|||||||||||||||||||||||||||! AspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAsnIleP 301700 : GACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATAT : 301759 329 : euIleTyrCysTyrValGlyGluLeuLeuLeuGlyGln >>>> Target Intron : 341 !!|||!:!||||||:!!||||||:!!|||! !! !||| 80 bp heIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301760 : TCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt.................. : 301800 342 : 4 >>>> GlySerGluIleAlaThrAlaLeuTyrAspIleGluTrpTyrAsnLeuP : 357 !!|||:!!|||!.!:!!|||! !|||!!:|||!!:||||||||||||| ++CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuP 301801 : .......agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTAC : 301926 358 : roGlyArgLysAlaArgAspIleValLeuValLeuAlaIleSerLysTyrProLeuLy : 376 ||!.!!:!!:!||| !|||:!!:!!|||:!! !!.!||||||:!!||||||! !|| roAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLy 301927 : CAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAA : 301983 377 : sLeuThrAlaGlyLysIleLeuValLeuSerMetAsnThrPheGlyValValArgVal : 395 |||||||||||||||||||:!!! !||||||:!!|||||||||.!! !|||!.!||| sLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerValAsnVal 301984 : ACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTAAATGTC : 302040 vulgar: gi|815911888|ref|XP_012241385.1| 127 395 . KQ414889.1 300006 302042 + 706 M 44 132 S 0 2 5 0 2 I 0 41 3 0 2 S 1 1 M 71 213 G 1 0 M 25 75 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 33 99 5 0 2 I 0 966 3 0 2 M 37 111 5 0 2 I 0 76 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300007 302042 706 + . gene_id 2 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300007 300140 . + . KQ414889.1 exonerate:protein2genome:local exon 300007 300140 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300141 300142 . + . intron_id 1 ; splice_site "CG" KQ414889.1 exonerate:protein2genome:local intron 300141 300185 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300184 300185 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300186 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300186 300476 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 300616 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 300615 300616 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300617 300716 . + . KQ414889.1 exonerate:protein2genome:local exon 300617 300716 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300717 300718 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300717 301686 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 301685 301686 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302042 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302042 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300007 302042 706 + . alignment_id 2 ; Query gi|815911888|ref|XP_012241385.1| ; Align 300007 128 132 ; Align 300187 173 213 ; Align 300400 245 75 ; Align 300618 271 99 ; Align 301687 304 111 ; Align 301878 341 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 538 Query range: 14 -> 407 Target range: 217153 -> 219713 15 : HisTyrLysSerAspIleTyrHisThrPheGlnPheCysHisTrpIleLeuLysProL : 34 .!.|||:::...:::||| ::!.!!|||!:: !!.!|||:!:|||||||||: GluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProM 217154 : GAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGA : 217211 35 : euGlyIleTyrPhePheLeuHisAspHisValAsnLysPheGluLysIleValSerVa : 53 !!|||:!!!:: !! !!.! ! ..!!.!!:!! !..!||||||:!!! ! etGlyLeuTrpProAsnSerArgThr---ThrThrArgSerArgLysIleLeuTyrLy 217212 : TGGGTCTTTGGCCAAACTCACGTACC---ACCACCAGATCCCGAAAAATCCTCTACAA : 217265 54 : lLeuLeuIleIleIleCysCysSerIleLeuGlnPheValIleValProPheGlyTyr : 72 !|||:!!! ! !:!!|||! !.!!:!::!!...|||:!!.!!||||||! !..! sLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMet 217266 : ACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATG : 217322 73 : TyrIleLeuPheTyrGluLysAspMetAsnMetLysIleLysPheLeuGlyProLeuA : 92 |||:!:!!!.!! ! ! :!!|||:!: !! |||:!:|||.!.!!!||||||||| TyrValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuI 217323 : TACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGA : 217382 93 : laPheCysValThrAlaLeuPheLysTyrGlyTyrLeuGlyValLysSerSerGluLe : 111 !|||||||||! !|||!!! !!|||||| !! !||| !||| ! !.!:!!!!::! lePheCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIl 217383 : TCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACAT : 217439 112 : uGlyArgCysValLysHisValLysLysAsnTrpLysMetLeuGlnAspLysAspHis : 130 ! !!..!||||||!:!...:!!:!!::!:!!|||!:!! :!!::! !:!! ! !! eArgGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAsp 217440 : TCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGAC : 217496 131 : ArgAlaIleMetValArgTyrValThrMetGlyArgAsnLeuIleThrLeuCysAlaA : 150 |||! ! |||:!! ! !!!.!!.!.!.||||||!!.|||:!! !||||||.!! ArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrP 217497 : AGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCT : 217556 151 : laPheMetTyrThrGlyGlyLeuSerTyrHisThrIleMetProLeuLeuSerLysLy : 169 !|||||||||!:!||| ::: |||::: ! !!!:|||:!! ! ! !!: hePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyAr 217557 : TCTTCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAG : 217613 170 : sLysIleAsnGlu<-><->AsnIleThrIleArgProLeuThrTyrProGlyTyrGlu : 186 !! :!!:::||| |||:!!|||.!!! !||||||..!!:!||| ! :!! gIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLys 217614 : AATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAG : 217670 187 : AlaPhePheAspIleGlnGluSerProThrTyrGluIleValTyrCysMetHisCysV : 206 !.!!.!!|||! !!:: ! !!!|||||| !!|||||||||!:!! !:!:!!.! : TyrIleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuI 217671 : TATATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGA : 217730 207 : alTyrValLeuIleThrGlyAsnIleThrMetAlaAlaTyrSerLeuThrAlaIlePh : 225 !! !! ! !:!:! ! !...|||||| !||||||! !||||||.!!||| !|| leAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPh 217731 : TCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTT : 217787 226 : eThrThrHisAlaCysGlyGlnIleLysIleGlnThrLeuArgLeuGluAsnLeuArg : 244 |.!!..!||||||||||||||||||:!!:!: !! ! ! !!|||:!!:!!|||! ! eAlaValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIle 217788 : CGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATC : 217844 245 : LysAspGlyLysAlaLeuLysAsnGlyIleGluAspHisLeuAlaValIleValSerG : 264 ! ! ! !! !! !:!!!..:!! !:!:!!:! !...:!!||| !|||||||||: AspGlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerG 217845 : GACGGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTC : 217904 265 : luHisValGluIleLeuArgPheThrLysAsnIleGluThrAlaLeuGlnGlyLeuPh : 283 !!||||||..!||||||!:!! !..!!:! ! |||! !! !! !..! !! !|| lnHisValArgIleLeuLysCysValArg***IleValGlyGluCysSerLeuCysPh 217905 : AACACGTTCGGATATTAAAGTGTGTAAGATAGATCGTTGGTGAATGCTCGCTTTGTTT : 217961 284 : eLeuIleGluValMet{Le} >>>> Target Intron 1 >>>> {u}SerThr : 291 |! !.!!:!!! !|||{ } 1305 bp {!}... eTrpPheGlnGlyMet{Ly}-+ ++{s}LysTyr 217962 : TTGGTTTCAGGGGATG{AA}tt.........................ag{a}aaatat : 219290 292 : LeuLeuIleCysLeuLeuGluTyrTyrCysMetMetGluTrpGluThrSerAspSerV : 311 ::: ::: ||| :::::: ... !||||||:!!:!!!:!||| !. IleTyrValAsnLeuTyrLysPheGluTyrGln***GluTrpLysSerAsnAspValT 219291 : atttacgttaatttgtataaatttgaatatcaatAGGAATGGAAATCGAATGATGTAA : 219350 312 : alAlaIleSerThrTyrIleIleLeuLeuThrSerPheThrPheAsnIleLeuIleTy : 330 .!::! ! !||||||||||||||||||! !|||.!.||||||||||||...|||:: hrSerAlaValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePh 219351 : CGAGTGCAGTGACATACATCATTCTACTTATATCCCTcactttcaacattttcatatt : 219407 331 : rCysTyrValGlyGluLeuLeuLeuGlyGln >>>> Target Intron 2 >>>> : 341 :||||||:!!||||||:!!:!! !! !||| 73 bp eCysTyrIleGlyGluIleValAlaGluGln++ 219408 : ttgctaCATAGGAGAGATCGTTGCTGAACAggt......................... : 219442 342 : GlySerGluIleAlaThrAlaLeuTyrAspIleGluTrpTyrAsnLeuProGlyAr : 359 ! :::|||... !||| ||||||||||||...||| !!|||!: ++CysArgLysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLy 219443 : agTGtaggaaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAA : 219567 360 : gLysAlaArgAspIleValLeuValLeuAlaIleSerLysTyrProLeuLysLeuThr : 378 !||| !! ! ! !||||||..!:!!|||!!:|||!!.! ! !!:!!||||||||| sLysLysLeuTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThr 219568 : GAAAAAGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACA : 219624 379 : AlaGlyLysIleLeuValLeuSerMetAsnThrPheGlyValValArgValGluIleL : 398 ||||||!!.!!::!!! !||||||!!:!:!|||||| !! !|||!! :::::::::. AlaGlyAsnMetValGluLeuSerIleSerThrPheThrAspValSerIleLysLeuP 219625 : GCCGGAAATATGGTCGAATTGTCTATCAGCACTTTTACCGACGTGAGtatcaaattat : 219684 399 : euAlaSerLeuProGluHisAlaAlaAsn : 407 .. ||| ! ! ! ! !|||||| heLysSerThrPheProSerLeuAlaAsn 219685 : tcaaatctaCATTTCCATCTCTGGCGAAT : 219713 vulgar: gi|815911888|ref|XP_012241385.1| 14 407 . KQ414889.1 217153 219713 + 538 M 28 84 G 1 0 M 130 390 G 0 6 M 115 345 S 0 2 5 0 2 I 0 1301 3 0 2 S 1 1 M 51 153 5 0 2 I 0 69 3 0 2 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217154 219713 538 + . gene_id 3 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217154 217980 . + . KQ414889.1 exonerate:protein2genome:local exon 217154 217980 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 217981 217982 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 217981 219285 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219284 219285 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219286 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219286 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219713 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217154 219713 538 + . alignment_id 3 ; Query gi|815911888|ref|XP_012241385.1| ; Align 217154 15 84 ; Align 217238 44 390 ; Align 217634 174 345 ; Align 219287 290 153 ; Align 219513 341 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 516 Query range: 1 -> 395 Target range: 226870 -> 230412 2 : ArgSerSerSerAspValAsnAspHisLeuGlnAsnSerHisTyrLysSerAspIleT : 21 !:! !!|||:!!:!!:!! ..!! ! ! !.!.!:! !!|||:!!..! !!:!: GlnArgSerAlaAsnLeuAlaSerLeuAlaThrGluAsnAspTyrGlnGluTyrLeuA 226871 : CAGCGATCGGCGAACCTCGCGTCTCTCGCGACAGAGAACGACTATCAGGAATACTTGA : 226928 22 : yrHisThrPheGlnPheCysHisTrpIleLeuLysProLeuGlyIleTyrPhePheLe : 40 !!! !:!.!.|||!!. !!.!|||:!:||||||||||||||||||!:: ! ! snLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerSe 226929 : ACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTC : 226985 41 : uHisAspHisValAsnLysPheGluLysIleValSerValLeuLeuIleIleIleCys : 59 !!.! ! ! ::!::!.!.! !!:! ! !!||| !|||:!! !.!!:!!||| rArgLysSer---SerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCys 226986 : GCGCAAAAGC---TCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGT : 227039 60 : CysSerIleLeuGlnPheValIleValProPheGlyTyrTyrIleLeuPheTyrGluL : 79 ! !:!!:!::!!...|||! !:!:||| !! !|||! |||:!::!!.!. ! ! !| TyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValL 227040 : TACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGA : 227099 80 : ysAspMetAsnMetLysIleLysPheLeuGlyProLeuAlaPheCysValThrAlaLe : 98 ||! ! !!! ! !:!:|||.!.:!!||||||:!!:!!|||! !!.!! !:!!|| ysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLe 227100 : AAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCT : 227156 99 : uPheLysTyrGlyTyrLeuGlyValLysSerSerGluLeuGlyArgCysValLysHis : 117 |.!!||||||..! ||| ! !! ! ..!..!!!::!! !..!||||||:!!!.. uLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArg 227157 : CCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGG : 227213 118 : ValLysLysAsnTrpLysMetLeuGlnAspLysAspHisArgAlaIleMetValArgT : 137 :!!||| !:!!||||||! :!!::! !! !!!: !!||| !:!:||||||! !| IleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrT 227214 : ATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGT : 227273 138 : yrValThrMetGlyArgAsnLeuIleThrLeuCysAlaAlaPheMetTyrThrGlyGl : 156 ||!.! ! ||||||!!.|||||||||:!!|||.!! !|||:!:!:!!::... yrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPh 227274 : ACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagttt : 227330 157 : yLeuSerTyrHisThrIleMetProLeuLeuSerLysLysLysIleAsnGlu<-><-> : 174 ::: ::::::! !:!!:!:|||:!! !:!! !!.. !!..||| eValPhePheTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGly 227331 : cgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGA : 227387 175 : AsnIleThrIleArgProLeuThrTyrProGlyTyrGluAlaPhePheAspIleGlnG : 193 ||| !!:! !! !! !:!! !!!:!||| ! :!! !.!! !|||:!!!:: AsnHisSerTyrIleGlnMetProPheProPheProLysIleIleAlaAspValArgT 227388 : AACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTT : 227447 194 : luSerProThrTyrGluIleValTyrCysMetHisCysValTyrValLeuIleThrGl : 212 ! |||||| ! !!|||||| !!!:!! :!:!!.! !||| ! !:!!:!: ! yrSerProPheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuHi 227448 : ACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCA : 227504 213 : yAsnIleThrMetAlaAlaTyrSerLeuThrAlaIlePheThrThrHisAlaCysGly : 231 !..!:!!||| ||||||! !|||:!!.!!|||:!:.!!.!!..!|||||||||||| sGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGly 227505 : CGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGT : 227561 232 : GlnIleLysIleGlnThrLeuArgLeuGluAsnLeuArgLysAspGlyLysAlaLeuL : 251 |||!!::!!:!: !..!! ! !!|||! !:!!|||! ! ! ! ! !! !! !:!!! GlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGlyArgAlaAspMetS 227562 : CAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGCAGAGCGGATATGA : 227621 252 : ysAsnGlyIleGluAspHisLeuAlaValIleValSerGluHisValGluIleLeu{A : 270 ..!!. !:!:!!:|||...:!!||| !||||||!!!.!.||||||..!||||||{! erLysThrLeuAspAspArgIleAlaSerIleValThrHisHisValArgIleLeu{A 227622 : GCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACCACGTTCGAATATTG{A : 227678 271 : r} >>>> Target Intron 1 >>>> {g}PheThrLysAsnIleGluThrAla : 278 .} 396 bp {!}||| ! !||||||! !.!! s}++ ++{n}PheLeuAlaLeuIleGluLysThr 227679 : A}gt.........................ag{C}TTTCTGGCCCTCATAGAGAAAACC : 228098 279 : LeuGlnGlyLeuPheLeuIleGluValMetLeuSerThrLeuLeuIleCysLeuLeuG : 298 :!!||| !:!! !!!!:!!||| !!:!: !!!!|||:!!:!!:!:||||||:!!| MetGlnGlnIleAlaPheValGluPheLeuGlyCysThrIleIleLeuCysLeuIleG 228099 : ATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGTACAATAATTCTGTGCCTCATCG : 228158 299 : luTyrTyrCysMetMet >>>> Target Intron 2 >>>> GluTrpGluThr : 307 |||||||| !!!:! ! 72 bp ||||||.!. !! luTyrTyrIleIleThr++ ++GluTrpAsnPro 228159 : AGTATTACATCATAACGgt.........................agGAATGGAATCCG : 228257 308 : SerAspSerValAlaIleSerThrTyrIleIleLeuLeuThrSerPheThrPheAsnI : 327 !.!!!:! !..! ! ! !|||||| ! |||||| !|||||||||||||||| LysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerPheThrPheAsnI 228258 : AAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCTTTAccttcaata : 228317 328 : leLeuIleTyrCysTyrValGlyGluLeuLeuLeuGlyGln >>>> Target Int : 341 ||...|||:::||||||:!!||||||:!!:!! !! !!!. 1889 b lePheIlePheCysTyrIleGlyGluIleValAlaGluHis++ 228318 : ttttcatattttgttaTATAGGAGAAATTGTTGCCGAACACgt............... : 228361 342 : ron 3 >>>> GlySerGluIleAlaThrAlaLeuTyrAspIleGluTrpTyrAsnL : 356 p !!!!!:!!:!!!.! ! !! !||| ||||||||||||...| ++CysArgLysValGlyGluLysSerTyrMetIleGluTrpTyrArgL 228362 : ..........agTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGAT : 230293 357 : euProGlyArgLysAlaArgAspIleValLeuValLeuAlaIleSerLysTyrProLe : 375 || !!|||!.!||| !! ! ! !:!!|||:!!:!!|||!!:|||!!.! ! !! euThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSerTh 230294 : TAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGAC : 230350 376 : uLysLeuThrAlaGlyLysIleLeuValLeuSerMetAsnThrPheGlyValValArg : 394 !|||!!!|||||||||!!.!!::!!! !||||||:!:|||||||||.!!! !|||!!! rLysPheThrAlaGlyAsnMetValGluLeuSerValAsnThrPheSerAspValSer 230351 : GAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGACGTAAGT : 230407 395 : Val : 395 :!! Ile 230408 : ATC : 230412 vulgar: gi|815911888|ref|XP_012241385.1| 1 395 . KQ414889.1 226870 230412 + 516 M 42 126 G 1 0 M 129 387 G 0 6 M 96 288 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226871 230412 516 + . gene_id 4 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226871 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226871 227679 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230412 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230412 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226871 230412 516 + . alignment_id 4 ; Query gi|815911888|ref|XP_012241385.1| ; Align 226871 2 126 ; Align 226997 45 387 ; Align 227390 174 288 ; Align 228077 271 99 ; Align 228248 304 111 ; Align 230248 341 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 408 Query range: 18 -> 395 Target range: 232450 -> 235153 19 : AspIleTyrHisThrPheGlnPheCysHisTrpIleLeuLysProLeuGlyIleTyrP : 38 ||| ! ! :!!!:!.!!||| ! !!.!|||.!!|||! !|||:!!||| !!:: AspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpP 232451 : GACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGC : 232508 39 : hePheLeuHisAspHisValAsnLysPheGluLysIleValSerValLeuLeuIleIl : 57 !:!! !!: ..!:::!:! !:!!:!!:!!:!!:!! !||||||! !:! roArgValThrGlu---ThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLe 232509 : CGCGTGTTACAGAG---ACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACT : 232562 58 : eIleCysCysSerIleLeuGlnPheValIleValProPheGlyTyrTyrIleLeuPhe : 76 !! !||| !|||:!::!! ! ! !|||||||||! ! ! !:!||||||||| uThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPhe 232563 : CACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTC : 232619 77 : TyrGluLysAspMetAsnMetLysIleLysPheLeuGlyProLeuAlaPheCysValT : 96 ! !!:! !..!:!:.!. !:!!!:|||! !:!!||||||:!!::! !! !:!!! GluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuM 232620 : GAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGA : 232679 97 : hrAlaLeuPheLysTyrGlyTyrLeuGlyValLysSerSerGluLeuGlyArgCysVa : 115 !!.! !!!.!!.||| !!! !||| !!.!|||:!!!:!!!::!! ! !||||| etGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysVa 232680 : TGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGT : 232736 116 : lLysHisValLysLysAsnTrpLysMetLeuGlnAspLysAspHisArgAlaIleMet : 134 |:!!!!.||||||:!!:!!|||::!! :!!:!! ! ! !||||||! !:!:||| lGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMet 232737 : GGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATG : 232793 135 : ValArgTyrValThrMetGlyArgAsnLeuIleThrLeuCysAlaAlaPheMetTyrT : 154 :!!!:! !!!.!! !:!:||||||::::!! ! !:!!..!||| !! !|||:!!| LeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisT 232794 : TTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACA : 232853 155 : hrGlyGlyLeuSerTyrHisThrIleMetProLeu<->LeuSerLysLysLysIle<- : 172 |||||! ! !||| !!.!.! !:!!! !||| :!!|||! ! ! :!: hrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGl 232854 : CCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGG : 232910 173 : >AsnGluAsnIleThrIleArgProLeuThrTyrProGlyTyrGluAlaPhePheAsp : 190 ||||||!:! !:!!!!: !|||||| !!! ! !! !||| ! !.!..!.||| yAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAsp 232911 : GAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGAC : 232967 191 : IleGlnGluSerProThrTyrGluIleValTyrCysMetHisCysValTyrValLeuI : 210 ! !::! ||||||||| !!||||||:!!!:! !:!:!!.|||:!!! !! !!!!| ThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheI 232968 : ACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCA : 233027 211 : leThrGlyAsnIleThrMetAlaAlaTyrSerLeuThrAlaIlePheThrThrHisAl : 229 ||..!..!::!:!!|||:!!!.!|||! !.!!||| !|||:!!.!..!!! !||||| leValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAl 233028 : TCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGC : 233084 230 : aCysGlyGlnIleLysIleGlnThrLeuArgLeuGluAsnLeuArgLysAspGlyLys : 248 ||||||||||:!:!!.:!: !! !! !!:!|||!!::!!||| ! ! ! ! ! aCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGly 233085 : GTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGG : 233141 249 : AlaLeuLysAsnGlyIleGluAspHisLeuAlaValIleValSerGluHisValGluI : 268 ! !:!!!..! ! :!! ! |||!.! !!||||||..!.!.|||:!!...! GlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgT 233142 : CAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTA : 233201 269 : leLeu{Ar} >>>> Target Intron 1 >>>> {g}PheThrLysAsnIleGl : 276 !|||{!!} 1315 bp {!}|||! !::!|||||||| hrLeu{Se}++ ++{r}PheIleArgAsnIleGl 233202 : CATTA{AG}gt.........................ag{T}TTTATACGGAATATAGA : 234540 277 : uThrAlaLeuGlnGlyLeuPheLeuIleGluValMetLeuSerThrLeuLeuIleCys : 295 |!.!!.!:!!.!. !:!!! !|||:!!|||:!!:!: !!!!|||||| !!!:||| uAsnValMetAsnLeuIleCysLeuValGluLeuValGlyCysThrLeuAsnMetCys 234541 : GAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACGTTGAACATGTGC : 234597 296 : LeuLeuGluTyr{Ty} >>>> Target Intron 2 >>>> {r}CysMetMetG : 304 :!!|||||||||{!!} 180 bp { }|||!!::!: MetLeuGluTyr{**}-+ +-{*}CysIleLeuT 234598 : ATGCTCGAGTAT{TA}tt.........................aa{A}TGTATTTTAA : 234804 305 : luTrpGluThrSerAspSerValAlaIleSerThrTyrIleIleLeuLeuThrSerPh : 323 ! :!! !!........ ::::!!:!!|||:!!|||:!!! !..!|||.! hrSerGlnGluLysSerLysGluLysLeuAlaSerTyrValIleValTyrValSerMe 234805 : CTTCTCAGGAAAAgtcgaaggaaaaattagCTTCATACGTCATCGTGTACGTGTCCAT : 234861 324 : eThrPheAsnIleLeuIleTyrCysTyrValGlyGluLeuLeuLeuGlyGlnGlySer : 342 .||||||||||||...|||:::||||||:!!|||||| !||| !! !|||! !.!! tThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGlnValGly 234862 : GACATTtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGCAGGTAGGA : 234918 343 : GluIle{Al} >>>> Target Intron 3 >>>> {a}ThrAlaLeuTyrAspI : 351 ..! !{ } 74 bp {!} ! !:!!||| ! Ser***{Ly}++ -+{s}GluLysValTyrMetT 234919 : TCATGA{AA}gt.........................gg{A}GAAAAAGTGTACATGA : 235019 352 : leGluTrpTyrAsnLeuProGlyArgLysAlaArgAspIleValLeuValLeuAlaIl : 370 !|||||||||...|||||| !!:!! |||! !! !:!:|||:!!:!!:!!:!!! hrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSerAr 235020 : CCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAG : 235076 371 : eSerLysTyrProLeuLysLeuThrAlaGlyLysIleLeuValLeuSerMetAsnThr : 389 |||!.. !:!!|||:!!||||||||||||.!!||| !:!!|||:!: ||| gSerSerMetValIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThr 235077 : GTCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACA : 235133 390 : PheGlyValValArgVal : 395 ||||||! !|||!!!:!! PheGlyAspValSerIle 235134 : TTTGGCGATGTGAGTATT : 235153 vulgar: gi|815911888|ref|XP_012241385.1| 18 395 . KQ414889.1 232450 235153 + 408 M 24 72 G 1 0 M 122 366 G 0 3 M 6 18 G 0 3 M 98 294 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 29 87 S 0 2 5 0 2 I 0 176 3 0 2 S 1 1 M 44 132 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232451 235153 408 + . gene_id 5 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232451 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232451 233208 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234613 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234613 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234614 234615 . + . intron_id 2 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 234614 234793 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234792 234793 . + . intron_id 1 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 234794 234928 . + . KQ414889.1 exonerate:protein2genome:local exon 234794 234928 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234929 234930 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234929 235002 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 235001 235002 . + . intron_id 2 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 235003 235153 . + . KQ414889.1 exonerate:protein2genome:local exon 235003 235153 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232451 235153 408 + . alignment_id 5 ; Query gi|815911888|ref|XP_012241385.1| ; Align 232451 19 72 ; Align 232523 44 366 ; Align 232892 166 18 ; Align 232913 172 294 ; Align 234525 271 87 ; Align 234795 301 132 ; Align 235004 346 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 376 Query range: 15 -> 275 Target range: 221360 -> 222143 16 : TyrLysSerAspIleTyrHisThrPheGlnPheCysHisTrpIleLeuLysProLeuG : 35 ||||||!!!:!!:!: ! !:! ! |||!!. !!!.!|||||||||||||||:!!| TyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleG 221361 : TACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCG : 221418 36 : lyIleTyrPhePheLeuHisAspHisValAsnLysPheGluLysIleValSerValLe : 54 ||:!!!:: ! ! !:!!:!!::!! ! ! |||!:! !:!!! ! !|| lyValTrp---ProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLe 221419 : GTGTTTGG---CCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 55 : uLeuIleIleIleCysCysSerIleLeuGlnPheValIleValProPheGlyTyrTyr : 73 |:!!! !:!!:!!|||! !|||:!::!! !|||:!!:!:||||||! !.!! !||| uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 74 : IleLeuPheTyrGluLysAspMetAsnMetLysIleLysPheLeuGlyProLeuAlaP : 93 :!::!!.!! ! ! !:!!|||:!: !!! !:!||||||!!.||||||||||||::!| ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 94 : heCysValThrAlaLeuPheLysTyrGlyTyrLeuGlyValLysSerSerGluLeuGl : 112 ||||||||! !|||!!!.!.|||||| ! ||| !:!! ! ..!!:!!!::!! ! heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 113 : yArgCysValLysHisValLysLysAsnTrpLysMetLeuGlnAspLysAspHisArg : 131 !..!|||:!!:!!!.!:!!:!! !:!!||||||! :!! !!... ! !!!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 132 : AlaIleMetValArgTyrValThrMetGlyArgAsnLeuIleThrLeuCysAlaAlaP : 151 ! !||||||:!!..! !!!.!! !.!.||||||...||||||! !:!!|||.!! !| AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 152 : heMetTyrThrGlyGlyLeuSerTyrHisThrIleMetProLeuLeuSerLysLys<- : 170 ||||||||!:!||| ::: |||::: ! !!!:|||!!! ! ! ||| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 171 : ><->LysIleAsnGluAsnIleThrIleArgProLeuThrTyrProGlyTyrGluAla : 187 ! :!! |||:::|||... |||:!!..!!:!||| !! ..! ! eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 188 : PhePheAspIleGlnGluSerProThrTyrGluIleValTyrCysMetHisCysValT : 207 .!! !!|||! !!:! ! ||||||..! !!||||||:!!!:!! :!:!!. !:!! IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 208 : yrValLeuIleThrGlyAsnIleThrMetAlaAlaTyrSerLeuThrAlaIlePheTh : 226 ! ! !:!:! ! !!:!|||||| !||||||! !||||||..!|||!!:|||.! laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 227 : rThrHisAlaCysGlyGlnIleLysIleGlnThrLeuArgLeuGluAsnLeuArgLys : 245 !..!|||||||||||||||!!::!!:!: !! ! ! !!|||:!!:!!|||! !!!. aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 246 : AspGlyLysAlaLeuLysAsnGlyIleGluAspHisLeuAlaValIleValSerGluH : 265 ! ! !! !! !:!! |||..!:!:!!: ...:!!||| !||||||!:!:!!| GlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnH 222052 : GGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAAC : 222111 266 : isValGluIleLeuArgPheThrLysAsnIle : 275 |||||..!||||||!:!!:!..!::: !||| isValArgIleLeuGlnTyrValArgCysIle 222112 : ACGTTCGAATATTGCAGTATGTACGTTGTATC : 222143 vulgar: gi|815911888|ref|XP_012241385.1| 15 275 . KQ414889.1 221360 222143 + 376 M 22 66 G 1 0 M 131 393 G 0 6 M 106 318 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221361 222143 376 + . gene_id 6 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221361 222143 . + . KQ414889.1 exonerate:protein2genome:local exon 221361 222143 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221361 222143 376 + . alignment_id 6 ; Query gi|815911888|ref|XP_012241385.1| ; Align 221361 16 66 ; Align 221427 39 393 ; Align 221826 170 318 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 374 Query range: 2 -> 273 Target range: 212815 -> 213631 3 : SerSerSerAspValAsnAspHisLeuGlnAsnSerHisTyrLysSerAspIleTyrH : 22 .!!.!!!.!|||! !!!. !!.:!!:!!:!!!!! !|||:!!!.! ::: GlyGlyLysAspGluLysLeuGlnValGluAspCysThrTyrGluLysArgValAsnL 212816 : GGAGGAAAAGATGAGAAATTGCAGGTCGAAGACTGTACCTACGAGAAACGtgtaaatt : 212873 23 : isThrPheGlnPheCysHisTrpIleLeuLysProLeuGlyIleTyrPhePheLeuHi : 41 :::... !!:: !!.!|||:!!||||||||| !|||:!:!:: ! ! ! euSerIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAsp---Ly 212874 : taagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGAC---AA : 212927 42 : sAspHisValAsnLysPheGluLysIleValSerValLeuLeuIleIleIleCysCys : 60 ..!:!!|||::: !.!!||||||! !:!!:!! !|||:!!! !! !:!!|||! ! sSerTyrValSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTyr 212928 : GTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTAC : 212984 61 : SerIleLeuGlnPheValIleValProPheGlyTyrTyrIleLeuPheTyrGluLysA : 80 .!!:!::!! !:!:!!:!!:!!|||! !.!!! |||:!:!!!.!! !!! !:::: GlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGluA 212985 : GGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgaga : 213044 81 : spMetAsnMetLysIleLysPheLeuGlyProLeuAlaPheCysValThrAlaLeuPh : 99 ::::: :::|||:!!!!.!!!||| !!!!||||||||||||.!!||||||!: snIlePheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTr 213045 : atatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTG : 213101 100 : eLysTyrGlyTyrLeuGlyValLysSerSerGluLeuGlyArgCysValLysHisVal : 118 :|||||| !! ||| !:!! ! .!!..!!!::!! !!! !||||||:!!|||:!! pLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMet 213102 : GAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATG : 213158 119 : LysLysAsnTrpLysMetLeuGlnAspLysAspHisArgAlaIleMetValArgTyrV : 138 ||| ! :!!||||||! :!! ! !!:!!!!: !!!:!! !||||||!.! ! !!! LysTyrAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsnA 213159 : AAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACG : 213218 139 : alThrMetGlyArgAsnLeuIleThrLeuCysAlaAlaPheMetTyrThrGlyGlyLe : 157 .!!:!.!.|||!:!!..:!!:!:|||:!!|||||| !||||||||||||||| ! laSerPheGlyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheTh 213219 : CGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCAC : 213275 158 : uSerTyrHisThrIleMetProLeuLeuSerLysLysLysIleAsnGlu<-><->Asn : 174 !! !||| ! !:!!:!:|||:!! !:!! ! |||! !:!! ||| ||| rPheTyrPheLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAsn 213276 : GTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAAC : 213332 175 : IleThrIleArgProLeuThrTyrProGlyTyrGluAlaPhePheAspIleGlnGluS : 194 :!:|||.!!|||! !:!!..! !|||! !! ..! !.!! !!|||:!!!:! ! | ValThrPheArgGlnMetValValProValSerArgPheIleValAspValArgTyrS 213333 : GTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACA : 213392 195 : erProThrTyrGluIleValTyrCysMetHisCysValTyrValLeuIleThrGlyAs : 213 |||||..! !!|||||| !!!:!! !!:!!. !:!! !! !:!!:!:! ! ! erProValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAl 213393 : GTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGC : 213449 214 : nIleThrMetAlaAlaTyrSerLeuThrAlaIlePheThrThrHisAlaCysGlyGln : 232 !|||.!!:!!!.!|||! !||||||.!!|||:!:|||.!!..!||||||||||||||| aIleAlaValValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGln 213450 : TATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAG : 213506 233 : IleLysIleGlnThrLeuArgLeuGluAsnLeuArgLysAspGlyLysAlaLeuLysA : 252 !!: ||| !! ! ! !!||||||:!!|||! ! ! ! ! !!:!!! !:!!!..! MetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGlyArgGluAspMetSerL 213507 : ATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGCA : 213566 253 : snGlyIleGluAspHisLeuAlaValIleValSerGluHisValGluIleLeuArgPh : 271 !...!:!:!!:|||...:!!||||||||||||!:!:!!||||||..!||||||!:!!: ysAsnValAspAspArgIleAlaValIleValAsnGlnHisValArgIleLeuLysTr 213567 : AGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTGAAGTG : 213623 272 : eThrLys : 273 :..!:!! pValGlu 213624 : GGTGGAA : 213631 vulgar: gi|815911888|ref|XP_012241385.1| 2 273 . KQ414889.1 212815 213631 + 374 M 37 111 G 1 0 M 133 399 G 0 6 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212816 213631 374 + . gene_id 7 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212816 213631 . + . KQ414889.1 exonerate:protein2genome:local exon 212816 213631 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212816 213631 374 + . alignment_id 7 ; Query gi|815911888|ref|XP_012241385.1| ; Align 212816 3 111 ; Align 212927 41 399 ; Align 213332 174 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 369 Query range: 8 -> 207 Target range: 294648 -> 295248 9 : AspHisLeuGlnAsnSerHisTyrLysSerAspIleTyrHisThrPheGlnPheCysH : 28 |||... !..!:!!..! ! !!!:!!:!|||:!: :!!!:!.!!:!!!:!|||! AspArgThrMetAspAspThrAsnArgAsnAspValAlaAsnSerLeuLysTyrCysA 294649 : GACAGAACCATGGACGATACTAACAGAAACGACGTGGCGAACAGCCTCAAGTATTGTC : 294706 29 : isTrpIleLeuLysProLeuGlyIleTyrPhePheLeuHisAspHisValAsnLysPh : 47 .. !!:!:|||||||||:!!|||:!!!:: .!!:!!:!!..!|||..!!:!|||.! rgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrSerHisThrSerLysLe 294707 : GAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACAGTCACACCAGCAAACT : 294763 48 : eGluLysIleValSerValLeuLeuIleIleIleCysCysSerIleLeuGlnPheVal : 66 ..!.|||:!!:!!|||:!!:!!|||||| ||| ! !! !:!!! !|||||| uAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLeuThrValLeuPheVal 294764 : GAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTTGACCGTACTGTTCGTT : 294820 67 : IleValProPheGlyTyrTyrIleLeuPheTyrGluLysAspMetAsnMetLysIleL : 86 :!!||||||! !||||||!:! !:!!|||:!!! |||::::::...:::|||!!:| LeuValProCysGlyTyrPheCysValPheHisValLysAsnValLysLeuLysMetL 294821 : TTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaacgtgaaattgaaGATGA : 294880 87 : ysPheLeuGlyProLeuAlaPheCysValThrAlaLeuPheLysTyrGlyTyrLeuGl : 105 ||.!!|||||||||:!! !!:!! !:!! !:!!:!!.!!!:!|||.!!! !|||! ysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuArgTyrSerCysLeuVa 294881 : AACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCAGGTACAGCTGTCTAGT : 294937 106 : yValLysSerSerGluLeuGlyArgCysValLysHisValLysLysAsnTrpLysMet : 124 !:!!|||!!! !!! !!!! !!.!|||:!!:!! !!:!!:!!!!.:!!||||||:!! lLeuLysThrProAlaPheLysHisCysIleGluAspIleGluAsnAspTrpLysLeu 294938 : TTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGAGAACGATTGGAAGTTG : 294994 125 : LeuGlnAspLysAspHisArgAlaIleMetValArgTyrValThrMetGlyArgAsnL : 144 :!!.!.:!! !!!:|||||||||||||||:!!!:! !!!.!! !:!: !!:!!..: IleAspAsnProGluHisArgAlaIleMetIleLysAsnAlaMetValThrGlnArgM 294995 : ATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCGATGGTCACGCAGAGGA : 295054 145 : euIleThrLeuCysAlaAlaPheMetTyrThrGlyGlyLeuSerTyrHisThrIleMe : 163 !!! !..! !! !.!! !.!.!!:|||!:!..!!.!:!!|||||||||.!!|||:: etThrValAlaPheThrIleIleIleTyrSerSerAlaValSerTyrHisAlaIleVa 295055 : TGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGTCGTATCACGCCATTGt : 295111 164 : tProLeuLeuSerLysLysLysIleAsn<->GluAsnIleThrIleArgProLeuThr : 181 :|||......|||... ! ||| :!!|||! !||||||||| !!||| !! lProPhePheSerAsnAlaLeuGluAsnLysLysAsnAsnThrIleArgAlaLeuPro 295112 : gccatttttttcaaacgctTTGGAGAACAAGAAGAATAATACGATTCGTGCGTTACCA : 295168 182 : TyrProGlyTyrGluAlaPhePheAspIleGlnGluSerProThrTyrGluIleValT : 201 !|||||||||||| !||| ! ||| ! ! ...||||||||||||||||||:!! IleProGlyTyrGluLeuPheValAspAlaTyrSerSerProThrTyrGluIleIleA 295169 : ATTCCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGTCCTACCTACGAGATCATAA : 295228 202 : yrCysMetHisCysValTyr : 207 ! ! !! !|||||| rgThrHisLeuPheValTyr 295229 : GAACTCATCTCTTTGTTTAC : 295248 vulgar: gi|815911888|ref|XP_012241385.1| 8 207 . KQ414889.1 294648 295248 + 369 M 164 492 G 0 3 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294649 295248 369 + . gene_id 8 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294649 295248 . + . KQ414889.1 exonerate:protein2genome:local exon 294649 295248 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294649 295248 369 + . alignment_id 8 ; Query gi|815911888|ref|XP_012241385.1| ; Align 294649 9 492 ; Align 295144 173 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 364 Query range: 12 -> 257 Target range: 284496 -> 285240 13 : AsnSerHisTyrLysSerAspIleTyrHisThrPheGlnPheCysHisTrpIleLeuL : 32 :!!||| !:: ! !!!||| :!!!:! ! |||.!. !!.!|||.!!|||| AspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuL 284497 : GATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCA : 284554 33 : ysProLeuGlyIleTyrPhePheLeuHisAspHisValAsnLysPheGluLysIleVa : 51 |||||:!!|||:!!!:: !||| ! ! !|||!.!! !!.||||||||| ysProIleGlyValTrp---ProLeuSerLeuCysValThrThrLeuGluLysIleSe 284555 : AACCGATTGGCGTATGG---CCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAG : 284608 52 : lSerValLeuLeuIleIleIleCysCysSerIleLeuGlnPheValIleValProPhe : 70 !||||||:!!||| :!!||| !!|||! !:!::!! |||:!!:!:||||||! ! rSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCys 284609 : TTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGC : 284665 71 : GlyTyr<->TyrIleLeuPheTyrGluLysAspMetAsnMetLysIleLysPheLeuG : 89 !.! :!:||| ! ! |||:!::!!! !|||||||||.!.:!!| AlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleG 284666 : GCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCG : 284725 90 : lyProLeuAlaPheCysValThrAlaLeuPheLysTyrGlyTyrLeuGlyValLysSe : 108 ||||||||::!||||||:!!! !||| !.!!|||||| ! !||| ! !:::.! lyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGl 284726 : GTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGG : 284782 109 : rSerGluLeuGlyArgCysValLysHisValLysLysAsnTrpLysMetLeu<-><-> : 126 !.!!:!!:!!|||!:!||||||||| !!:!!::: !:!!|||...:!: ! yGlyLysIleGlyGlnCysValLysAspIleArgAlaAspTrpSerLeuThrLeuSer 284783 : CGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCG : 284839 127 : <->GlnAspLysAspHisArgAlaIleMetValArgTyrValThrMetGlyArgAsnL : 144 ......::::::...||| |||||| ! ! !!.!! !!!:||||||::!| HisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerL 284840 : CATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTT : 284899 145 : euIleThrLeuCysAlaAlaPheMetTyrThrGlyGlyLeuSerTyrHisThrIleMe : 163 || ! !!!!||||||!.!|||||||||:!!||||||!!!! !||| !|||:!:|| euAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMe 284900 : TGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGAT : 284956 164 : tProLeuLeuSer<->LysLysLysIleAsnGluAsnIleThrIleArgProLeuThr : 181 |||||||! !!!! :::! !:!!|||! !!!:||| |||:!:||| !!! !.!! tProLeuCysThrValArgThrGluIleIleAspAsnGluThrValArgSerGlnAla 284957 : GCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCG : 285013 182 : TyrProGlyTyrGluAlaPhePheAspIleGlnGluSerProThrTyrGluIleValT : 201 !:!||| !|||...!.!.!!.!!||| !:: ||||||:!!!:!||||||||| PheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValG 285014 : TTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGC : 285073 202 : yrCysMetHisCysValTyrValLeuIleThrGlyAsnIleThrMetAlaAlaTyrSe : 220 ! ! !|||!!.|||:!! !!.!!!!:!!! ! !::::!!|||:!:!.!|||! !|| lnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSe 285074 : AATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAG : 285130 221 : rLeuThrAlaIlePheThrThrHisAlaCysGlyGlnIleLysIleGlnThrLeuArg : 239 ||||.!!|||:!:|||..!! !|||!.!|||||||||.!!!:!|||! ..! !!:! rLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLys 285131 : CTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAG : 285187 240 : LeuGluAsnLeuArgLysAspGlyLysAlaLeuLysAsnGlyIleGluAspHis : 257 |||!!:!!.||| |||||| ! ! !!:!!!.|||:!:... ||| LeuAspLysLeu---ValAspGlyValLysGlyArgLysGlyLeuSerThrHis 285188 : CTGGATAAGCTC---GTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCAT : 285240 vulgar: gi|815911888|ref|XP_012241385.1| 12 257 . KQ414889.1 284496 285240 + 364 M 25 75 G 1 0 M 34 102 G 0 3 M 53 159 G 0 9 M 42 126 G 0 3 M 76 228 G 1 0 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284497 285240 364 + . gene_id 9 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284497 285240 . + . KQ414889.1 exonerate:protein2genome:local exon 284497 285240 . + . insertions 15 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 284497 285240 364 + . alignment_id 9 ; Query gi|815911888|ref|XP_012241385.1| ; Align 284497 13 75 ; Align 284572 39 102 ; Align 284677 73 159 ; Align 284845 126 126 ; Align 284974 168 228 ; Align 285202 245 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 347 Query range: 12 -> 252 Target range: 278549 -> 279281 13 : AsnSerHisTyrLysSerAspIleTyrHisThrPheGlnPheCysHisTrpIleLeuL : 32 :!!||| !::!!.!!!||| :!!!:! ! |||.!. !!.!|||.!!|||| AspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuL 278550 : GATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCA : 278607 33 : ysProLeuGlyIleTyrPhePheLeuHisAspHisValAsnLysPheGluLysIleVa : 51 |||||:!!|||:!!!:: !||| ! ! !|||!.!! !!.||||||||| ysProIleGlyValTrp---ProLeuSerLeuCysValThrThrLeuGluLysIleSe 278608 : AACCGATTGGCGTATGG---CCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAG : 278661 52 : lSerValLeuLeuIleIleIleCysCysSerIleLeuGlnPheValIleValProPhe : 70 !||||||:!!||| :!!||| !!|||! !:!::!! |||:!!:!:||||||! ! rSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCys 278662 : TTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGC : 278718 71 : GlyTyr<->TyrIleLeuPheTyrGluLysAspMetAsnMetLysIleLysPheLeuG : 89 !.! :!:||| ! ! |||:!::!!! !|||||||||.!.:!!| AlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleG 278719 : GCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCG : 278778 90 : lyProLeuAlaPheCysValThrAlaLeuPheLysTyrGlyTyrLeuGlyValLysSe : 108 ||||||||::!||||||..!! !||| !.!!|||||| ! !||| ! !:::.! lyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGl 278779 : GTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGG : 278835 109 : rSerGluLeuGlyArgCysValLysHisValLysLysAsnTrpLysMet<-><-><-> : 125 !.!!:!!:!!|||!:!||||||!!. !!:!!:::! !:!!|||...:!: yGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSer 278836 : CGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCG : 278892 126 : LeuGlnAspLysAspHisArgAlaIleMetValArgTyrValThrMetGlyArgAsnL : 144 ! !!::...::::::...||| |||||| ! ! !!.!! !!!:||||||::!| TyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerL 278893 : TATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTT : 278952 145 : euIleThrLeuCysAlaAlaPheMetTyrThrGlyGlyLeuSerTyrHisThrIleMe : 163 || ! !!!! !!|||!.!|||||||||:!!||||||:!!! !||| !.!!:!:|| euAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMe 278953 : TGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGAT : 279009 164 : tProLeuLeuSer<->LysLysLysIleAsnGluAsnIleThrIleArgProLeuThr : 181 |||||||!!!:!! :::! !:!!|||! !!!:||| !|||:!:||| !!! !.!! tProLeuPheAlaValArgThrGluIleIleAspAsnGluThrValArgSerGlnAla 279010 : GCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCG : 279066 182 : TyrProGlyTyrGluAlaPhePheAspIleGlnGluSerProThrTyrGluIleValT : 201 !:!||| !|||...!.!.!!.!!||| !:: ||||||:!!!:!||||||||| PheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValG 279067 : TTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGC : 279126 202 : yrCysMetHisCysValTyrValLeuIleThrGlyAsnIleThrMetAlaAlaTyrSe : 220 ! ! !|||!!.|||:!! !!.!!!!:!! ! !::::!!|||:!:!.!|||! !|| lnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSe 279127 : AATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAG : 279183 221 : rLeuThrAlaIlePheThrThrHisAlaCysGlyGlnIleLysIleGlnThrLeuArg : 239 ||||! !|||:!:|||..!! !|||!.!|||||||||.!!!:!|||! ..! !!:! rLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLys 279184 : CTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAG : 279240 240 : LeuGluAsnLeuArgLysAspGlyLysAlaLeuLysAsn : 252 |||!!:!!.|||! ! ! ! ! !|||!.! !|||!:! LeuAspLysLeuIleAspGlyValLysGlyArgLysSer 279241 : CTGGATAAGCTCATCGACGGAGTGAAAGGGAGGAAGAGC : 279281 vulgar: gi|815911888|ref|XP_012241385.1| 12 252 . KQ414889.1 278549 279281 + 347 M 25 75 G 1 0 M 34 102 G 0 3 M 52 156 G 0 9 M 43 129 G 0 3 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278550 279281 347 + . gene_id 10 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278550 279281 . + . KQ414889.1 exonerate:protein2genome:local exon 278550 279281 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278550 279281 347 + . alignment_id 10 ; Query gi|815911888|ref|XP_012241385.1| ; Align 278550 13 75 ; Align 278625 39 102 ; Align 278730 73 156 ; Align 278895 125 129 ; Align 279027 168 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 343 Query range: 12 -> 345 Target range: 259745 -> 261859 13 : AsnSerHisTyrLysSerAspIleTyrHisThrPheGlnPheCysHisTrpIleLeuL : 32 .!.!!! !!:!! ||| !!! ! !!:!!!:!.!!|||||| !!..|||.!!|||| GluThrSerPheThrSerHisSerAspTyrSerLeuGlnPheAsnArgTrpPheLeuL 259746 : GAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCCAATTTAATCGATGGTTCCTGA : 259803 33 : ysProLeuGlyIleTyrPhePheLeuHisAspHisValAsnLysPheGluLysIleVa : 51 |||||:!!||| !!:: ! ! ..! !..!!.!!:!.!!|||||||||:! ysProIleGlyAlaTrp---ProProSerSerSerThrThrArgLeuGluLysIleIl 259804 : AACCGATAGGCGCTTGG---CCACCTTCATCCTCCACGACCAGACTCGAGAAGATCAT : 259857 52 : lSerValLeuLeuIleIleIleCysCysSerIleLeuGlnPheValIleValProPhe : 70 !||||||:!!||||||.!!||||||! !|||! !:!!! ! !!..!:!::!!|||! ! eSerValIleLeuIlePheIleCysTyrSerThrIleLeuValThrLeuIleProCys 259858 : CTCTGTTATCCTGATCTTTATCTGCTACAGTACCATACTGGTCACCCTGATCCCGTGC : 259914 71 : GlyTyrTyrIleLeuPheTyrGluLysAspMetAsnMetLysIleLysPheLeuGlyP : 90 ! ! !:!!!!:|||.!! ! :!!:!!..!:!! !!||||||! ||| ! ||||||| ValLeuHisMetLeuLeuGluLysGluSerLeuTyrMetLysThrLysValLeuGlyP 259915 : GTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGAAGGTGCTCGGTC : 259974 91 : roLeuAlaPheCysValThrAlaLeuPheLysTyrGlyTyrLeuGlyValLysSerSe : 109 |||||.!! !!! !!..!!.!! !.!!!!.||| ! ||| !:!!!:!.!!!! roLeuThrHisTrpPheValGlyCysIleAsnTyrThrThrLeuLeuLeuArgGlyAr 259975 : CTCTTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTGTTGAGAGGCAG : 260031 110 : rGluLeuGlyArgCysValLysHisValLysLysAsnTrpLysMetLeuGlnAspLys : 128 !!!::!! !!!!||||||:!!||||||:!!!!.:!!|||!:!!!::!! ! :!! gAspIleLeuSerCysValGluHisValGluAsnAspTrpArgIleIleThrArgGlu 260032 : AGACATACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGAATTATAACGAGGGAG : 260088 129 : AspHisArgAlaIleMetValArgTyrValThrMetGlyArgAsnLeuIleThrLeuC : 148 ! !!!:! !:!:|||:!!||||||!.!! !.!.|||||| !!:!! !.!!! !| LysAspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgTyrValAlaAlaSerC 260089 : AAGGATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGATACGTCGCTGCCTCTT : 260148 149 : ysAlaAlaPheMetTyrThrGlyGlyLeuSerTyrHisThrIleMetProLeuLeuSe : 167 |||||||||||:!! ! !|||! !|||!!!!:! ! !:!!! ! !||| !!! ysAlaAlaPheValGlnGlyGlyValLeuCysPheCysLeuValThrValLeuSerTh 260149 : GCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTCACGGTGTTGAGTAC : 260205 168 : rLys<-><->LysLysIleAsnGluAsnIleThrIleArgProLeuThrTyrProGly : 184 !:!! :!! ! !||||||!..! ! !:!!!.!! !||| !!! ! !!! ! rGluValIleGlnValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaVal 260206 : AGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTGCCGTGCGCGGTG : 260262 185 : TyrGluAlaPhePheAspIleGlnGluSerProThrTyrGluIleValTyrCysMetH : 204 |||:!!! !.!..!.:!!:!:.!.!!:||||||! ! !!||||||||| ! !:!!! TyrLysGluLeuIleAsnValAsnAspSerProMetAsnGluIleValLeuValValG 260263 : TACAAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGATTGTTCTCGTCGTGC : 260322 205 : isCysValTyrValLeuIleThrGlyAsnIleThrMetAlaAlaTyrSerLeuThrAl : 223 !.! !|||! ! !!!!|||..!..!:::! !|||:!:!.! !!:!||||||.!!|| lnPheValSerGlyPheIleValAsnSerSerThrValGlyIlePheSerLeuAlaAl 260323 : AATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTTCAGTCTCGCGGC : 260379 224 : aIlePheThrThrHisAlaCysGlyGlnIleLysIle<->GlnThrLeuArgLeuGlu : 241 |:!!.!.|||.!!|||||||||||||||:!:!!.:!: ..! !! !! ! !||| aValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMetGluTrpIleThrGlu 260380 : TGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAATGGATCACGGAG : 260436 242 : AsnLeuArgLysAspGlyLysAlaLeuLysAsnGlyIleGluAspHisLeuAlaValI : 261 !:!! !:!!... !!!!. ! !|||!!.!.! ! ! .!.:!!!.!|||| PheValAspGluSerArgAsnArgLysLysLysAlaProPheLysGluIleGlyValI 260437 : TTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTCCTTTCAAGGAGATCGGAGTGA : 260496 262 : leValSerGluHisValGluIleLeuArgPheThrLysAsnIleGluThrAlaLeuGl : 280 |||||..!.!.|||:!!..! !|||! !! ! ! ! ! ||| !:!!!: leValGluHisHisLeuArgAlaLeuThr***AspLeuPheAspIleThrPheValAr 260497 : TTGTCGAACATCATTTGAGAGCACTCACGTAAGATTTGTTTGATATTACTTTTGTACG : 260553 281 : nGlyLeuPheLeuIleGluValMetLeuSerThrLeuLeuIleCysLeu{Le} >>> : 297 ! ! !.!!!!!||| ..!:!: !||||||:::::: |||{:!} g***ArgIlePheIleIleThrValGlySerThrIleIle***LysLeu{Il}++ 260554 : ATAAAGGATTTTTATAATTACGGTAGGATCTactataatttgaaaatta{at}gt... : 260608 298 : > Target Intron 1 >>>> {u}GluTyrTyrCysMetMetGluTrpGluThrS : 308 1109 bp {!} :::::: :::...||||||! !. -+{e}TyrPhePheLeuLeuGlnGluTrpAlaGluG 260609 : ......................tg{a}tatttctttcttttgcagGAATGGGCTGAGC : 261746 309 : erAspSerValAlaIleSerThrTyrIleIleLeuLeuThrSerPheThrPheAsnIl : 327 .!|||! ! ! !:!:|||||||||.!!!!::!!|||! !:!!.!! !||||||:! lnAspIleGlnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnVa 261747 : AAGATATACAAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGT : 261803 328 : eLeuIleTyrCysTyrValGlyGluLeuLeuLeuGlyGlnGlySerGluIleAla : 345 !!!!||| !||||||:!!||||||:!!||| !! !|||! !..!.!.:!:||| lPheIleIleCysTyrIleGlyGluIleLeuThrGluGlnValGlnHisLeuAla 261804 : ATTTATAATCTGTTACATCGGTGAAATACTAACGGAACAGGTACAACATTTGGca : 261859 vulgar: gi|815911888|ref|XP_012241385.1| 12 345 . KQ414889.1 259745 261859 + 343 M 25 75 G 1 0 M 130 390 G 0 6 M 67 201 G 0 3 M 61 183 S 0 2 5 0 2 I 0 1105 3 0 2 S 1 1 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259746 261859 343 + . gene_id 11 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259746 260605 . + . KQ414889.1 exonerate:protein2genome:local exon 259746 260605 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 260606 260607 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 260606 261714 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261713 261714 . + . intron_id 0 ; splice_site "tg" KQ414889.1 exonerate:protein2genome:local cds 261715 261859 . + . KQ414889.1 exonerate:protein2genome:local exon 261715 261859 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259746 261859 343 + . alignment_id 11 ; Query gi|815911888|ref|XP_012241385.1| ; Align 259746 13 75 ; Align 259821 39 390 ; Align 260217 169 201 ; Align 260421 236 183 ; Align 261716 298 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 338 Query range: 12 -> 270 Target range: 208185 -> 208962 13 : AsnSerHisTyrLysSerAspIleTyrHisThrPheGlnPheCysHisTrpIleLeuL : 32 |||!!!:!!||||||!:!|||:!: ! !!.! !!!::.!. ! |||! |||| AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 33 : ysProLeuGlyIleTyrPhePheLeuHisAspHisValAsnLysPheGluLysIleVa : 51 || !:!!||| !!:: ! ! |||!.! ::! !!!.|||!!.! ! ysIleIleGlySerTrpProArgSerIleAspArg---SerTrpLeuGluAsnSerGl 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGT---TCCTGGTTAGAGAACAGCCA : 208297 52 : lSerValLeuLeuIleIleIleCysCysSerIleLeuGlnPheValIleValProPhe : 70 ! !:!!||||||! !:!!:!! !! !!!!:!:||| |||:!!:!::!!||| ! nHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThr 208298 : GCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACC : 208354 71 : GlyTyrTyrIleLeuPheTyrGluLysAspMetAsnMetLysIleLysPheLeuGlyP : 90 ||| !:! :!!.!! ! :!!|||.!. !! :!!:!!|||.!!! !.!! GlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerA 208355 : GGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCG : 208414 91 : roLeuAlaPheCysValThrAlaLeuPheLysTyrGlyTyrLeuGlyValLysSerSe : 109 !!|||::!|||! !:!!! !|||!!! ||||||! ! !:!! !|||:::..!.! laLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGl 208415 : CTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGG : 208471 110 : rGluLeuGlyArgCysValLysHisValLysLysAsnTrpLysMetLeuGlnAspLys : 128 !!!::!! !!!:!||||||:!!:!!|||:!! :!!|||!:!! :!!:!! !!:!! yAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGlu 208472 : TGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAG : 208528 129 : AspHisArgAlaIleMetValArgTyrValThrMetGlyArgAsnLeuIleThrLeuC : 148 !!: !!||| !||||||:!! ! !!!.!!:!.!.!.!|||!!.||||||..!:!!| GluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleC 208529 : GAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATAT : 208588 149 : ysAlaAlaPheMetTyrThrGlyGlyLeuSerTyrHisThrIleMetProLeuLeuSe : 167 ||!.!|||||||||||| !||| ::: |||::: ! !:!!|||||| ! ! ysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrAr 208589 : GCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCG : 208645 168 : rLysLysLysIleAsnGlu<-><->AsnIleThrIleArgProLeuThrTyrProGly : 184 ! ! ||| :!!.!.||| |||:!:||| !||| !|||..!||||||! ! gAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProVal 208646 : AGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTT : 208702 185 : TyrGluAlaPhePheAspIleGlnGluSerProThrTyrGluIleValTyrCysMetH : 204 !:!! !.!!.!.|||:!!!:! ! ||||||..! !!|||||| !!||| :!:! ProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValG 208703 : CCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTAC : 208762 205 : isCysValTyrValLeuIleThrGlyAsnIleThrMetAlaAlaTyrSerLeuThrAl : 223 !.! :!!! ! !!!!:!!.!! !|||||||||:!:!.!|||! !.!!|||.!!|| lnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAl 208763 : AATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGC : 208819 224 : aIlePheThrThrHisAlaCysGlyGlnIleLysIleGlnThrLeuArgLeuGluAsn : 242 |:!:.!!.!!! !|||||||||||||||:!::!!||| !! !! ! !!:!!|||!!. aLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLys 208820 : GCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAG : 208876 243 : LeuArgLysAspGlyLysAlaLeuLysAsnGlyIleGluAspHisLeuAlaValIleV : 262 ||| ! ! ! !!:!!! ! !:!!!!...!:!:!!:.!....|||||| !|||| LeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleV 208877 : TTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCG : 208936 263 : alSerGluHisValGluIleLeuArg : 270 ||..!:!!||||||..!:!::!!!:! alGluGlnHisValArgValIleLys 208937 : TGGAGCAGCATGTTCGAGTGATCAAG : 208962 vulgar: gi|815911888|ref|XP_012241385.1| 12 270 . KQ414889.1 208185 208962 + 338 M 31 93 G 1 0 M 129 387 G 0 6 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 208962 338 + . gene_id 12 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208186 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208962 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208186 208962 338 + . alignment_id 12 ; Query gi|815911888|ref|XP_012241385.1| ; Align 208186 13 93 ; Align 208279 45 387 ; Align 208672 174 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 302 Query range: 21 -> 270 Target range: 266637 -> 267390 22 : HisThrPheGlnPheCysHisTrpIleLeuLysProLeuGlyIleTyrPhePheLeuH : 41 :!!!:!.!.|||!!. !!..|||.!!|||||||||:!!||| !!:: ||| TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeu- 266638 : TACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTG- : 266695 42 : isAspHisValAsnLysPheGluLysIleValSerValLeuLeuIleIleIleCysCy : 60 ...! !..!::!|||.!!|||::!||||||||| ! !||||||:!!||||||! --SerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266696 : --TCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 61 : sSerIleLeuGlnPheValIleValProPheGlyTyrTyrIleLeuPheTyrGluLys : 79 !!!! !:!!! !|||..!:!!:!!|||! ! !!:!:!!:!!:!!.!. ! !!::!! rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 80 : AspMetAsnMetLysIleLysPheLeuGlyProLeuAlaPheCysValThrAlaLeuP : 99 ..!!!:..!! !|||:!:||| ! !!!|||||||||::! !!! !!..!!.! !. SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 100 : heLysTyrGlyTyrLeuGlyValLysSerSerGluLeuGlyArgCysValLysHisVa : 118 !!!!.||| ! ||| !:!!:::|||!.!|||:!! !! !!||||||:!!|||:! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 119 : lLysLysAsnTrpLysMetLeuGlnAspLysAspHisArgAlaIleMetValArgTyr : 137 !:!!! !:!!|||!:!!!::!! !!!: !!!:! !:!:|||:!!!:! !! tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 138 : ValThrMetGlyArgAsnLeuIleThrLeuCysAlaAlaPheMetTyrThrGlyGlyL : 157 !.!! !!!:|||||| !!:!! !! !!!!||||||||||||||| ! !|||! !| AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 158 : euSerTyr<-><->HisThrIleMetProLeuLeuSerLysLysLysIleAsnGluAs : 174 ||.!!||| ||| .!. !!:!!! !!!! !:!! !||||||!. euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 175 : nIleThrIleArgProLeuThrTyrProGlyTyrGluAlaPhePheAspIleGlnGlu : 193 !! ! !:!!!.!! !||| !!! ! !!! !|||:!! !.!..!!! :!!.!. rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 194 : SerProThrTyrGluIleValTyrCysMetHisCysValTyrValLeuIleThrGlyA : 213 ||||||||| !!||||||||| ! ! !!.! !|||! ! !!!!|||..!..!: SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 214 : snIleThrMetAlaAlaTyrSerLeuThrAlaIlePheThrThrHisAlaCysGlyGl : 232 ::! !..!:!:!.!|||!:!||||||.!!|||:!:|||.!!.!!|||||||||||||| erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 233 : nIleLysIleGlnThrLeuArgLeu<->GluAsnLeuArgLysAspGlyLysAlaLeu : 250 |:!:!..:!:! !! !:!! !!:!! ||| !:!!!.!::!..! !! ! ::! ! nLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsn 267272 : GCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAAT : 267328 251 : LysAsnGlyIleGluAspHisLeuAlaValIleValSerGluHisValGluIleLeuA : 270 ||||||! ! ! ||| ! :!!!.!|||:!!|||..!.!.|||:!!..!:!!|||| LysAsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeuA 267329 : AAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGA : 267388 271 : rg : 270 || rg 267389 : GG : 267390 vulgar: gi|815911888|ref|XP_012241385.1| 21 270 . KQ414889.1 266637 267390 + 302 M 19 57 G 1 0 M 118 354 G 0 6 M 81 243 G 0 3 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266638 267390 302 + . gene_id 13 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266638 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266638 267390 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 266638 267390 302 + . alignment_id 13 ; Query gi|815911888|ref|XP_012241385.1| ; Align 266638 22 57 ; Align 266695 42 354 ; Align 267055 160 243 ; Align 267301 241 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 296 Query range: 21 -> 270 Target range: 274383 -> 275136 22 : HisThrPheGlnPheCysHisTrpIleLeuLysProLeuGlyIleTyrPhePheLeuH : 41 :!!!:!!!.|||!!. !!..|||.!!|||||||||:!!||| !:: ||| TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrp---ProLeuA 274384 : TACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGG---CCGTTAG : 274438 42 : isAspHisValAsnLysPheGluLysIleValSerValLeuLeuIleIleIleCysCy : 60 !...! !..!!..|||||||||::!|||:!!||| !|||||||||...:::||| laSerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTy 274439 : CCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctA : 274495 61 : sSerIleLeuGlnPheValIleValProPheGlyTyrTyrIleLeuPheTyrGluLys : 79 !!!!.!!:!!! ! !..!:!!:!!||| ! !!:!:!!|||:!!.!. !!::!! rCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGlu 274496 : CTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAA : 274552 80 : AspMetAsnMetLysIleLysPheLeuGlyProLeuAlaPheCysValThrAlaLeuP : 99 ..!:!::!!:!!|||:!:|||!!.||||||||||||!.! !!! !!! !!.! !. SerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyI 274553 : AGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAA : 274612 100 : heLysTyrGlyTyrLeuGlyValLysSerSerGluLeuGlyArgCysValLysHisVa : 118 !!!!.||| ! ||| !:!!:::|||!.!|||:!! !! !!||||||:!!|||:! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 274613 : TTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACAT : 274669 119 : lLysLysAsnTrpLysMetLeuGlnAspLysAspHisArgAlaIleMetValArgTyr : 137 !:!!! !:!!|||!:!!!::!! !!!: !!!:! !:!:|||:!!!:! !! tGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsn 274670 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAAC : 274726 138 : ValThrMetGlyArgAsnLeuIleThrLeuCysAlaAlaPheMetTyrThrGlyGlyL : 157 !.!! !!!:|||||| !!:!! ! !!!!||||||||||||||| ! !|||! !| AlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 274727 : GCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTC : 274786 158 : euSerTyr<-><->HisThrIleMetProLeuLeuSerLysLysLysIleAsnGluAs : 174 ||!!!||| ||| .!. !!:!!! !!!! :!! ! ||||||!. euCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluTh 274787 : TCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGAC : 274843 175 : nIleThrIleArgProLeuThrTyrProGlyTyrGluAlaPhePheAspIleGlnGlu : 193 !! !|||:!:!.! !||| !!! ! !!.!|||:!! !.!! !!! :!:.!. ! rArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThr 274844 : CAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACG : 274900 194 : SerProThrTyrGluIleValTyrCysMetHisCysValTyrValLeuIleThrGlyA : 213 ||||||||| !!||||||||| !..! !!!.! !|||! ! !!!!|||..!..!: SerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnS 274901 : AGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATT : 274960 214 : snIleThrMetAlaAlaTyrSerLeuThrAlaIlePheThrThrHisAlaCysGlyGl : 232 ::! !.!!:!:!.!|||!:!||||||.!!|||:!:|||.!!.!!||||||! !||||| erSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGl 274961 : CGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCA : 275017 233 : nIleLysIleGlnThrLeuArgLeu<->GluAsnLeuArgLysAspGlyLysAlaLeu : 250 |:!:!..:!:! !! !:!! !!:!! ||| !:!!!.! ! ..! !! ! nLeuSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsn 275018 : GTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaat : 275074 251 : LysAsnGlyIleGluAspHisLeuAlaValIleValSerGluHisValGluIleLeuA : 270 |||||| ..!.!.:!!!.!|||:!!|||..!.!.|||:!!..!:!!|||| LysAsnValTyrPheSerGluIleGlyValValValGluHisHisLeuArgValLeuA 275075 : aaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTCA : 275134 271 : rg : 270 || rg 275135 : GG : 275136 vulgar: gi|815911888|ref|XP_012241385.1| 21 270 . KQ414889.1 274383 275136 + 296 M 16 48 G 1 0 M 121 363 G 0 6 M 81 243 G 0 3 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274384 275136 296 + . gene_id 14 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274384 275136 . + . KQ414889.1 exonerate:protein2genome:local exon 274384 275136 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 274384 275136 296 + . alignment_id 14 ; Query gi|815911888|ref|XP_012241385.1| ; Align 274384 22 48 ; Align 274432 39 363 ; Align 274801 160 243 ; Align 275047 241 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 295 Query range: 117 -> 270 Target range: 304413 -> 304869 118 : ValLysLysAsnTrpLysMetLeuGlnAspLysAspHisArgAlaIleMetValArgT : 137 :!!...! ...!:::!!..!:!!:!!..! !!|||! !!!:|||:!!!:!| LeuSerThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysT 304414 : CTCTCTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAAT : 304471 138 : yrValThrMetGlyArgAsnLeuIleThrLeuCysAlaAlaPheMetTyrThrGlyGl : 156 ||! ! !|||||||||||||||! ! !:!!|||||| !||||||||||||||||| yrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGl 304472 : ACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGG : 304528 157 : yLeuSerTyrHisThrIleMetProLeuLeuSerLysLysLysIleAsnGlu<->Asn : 174 | !! !|||||||||:!!|||! !!!! !!!! !! ! ! :!::!!||| ||| yThrIleTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsn 304529 : CACCATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAAT : 304585 175 : IleThrIleArgProLeuThrTyrProGlyTyrGluAlaPhePheAspIleGlnGluS : 194 !||||||!:!||||||..!|||||| !|||...|||!!.||||||:!!||| !| ArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrS 304586 : CGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAA : 304645 195 : erProThrTyrGluIleValTyrCysMetHisCysValTyrValLeuIleThrGlyAs : 213 |||||! !||||||:!:||||||! !:!:||||||:!!! !! !! !:!!! ! !:: erProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSe 304646 : GCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTC : 304702 214 : nIleThrMetAlaAlaTyrSerLeuThrAlaIlePheThrThrHisAlaCysGlyGln : 232 !|||||| !.!|||! !.!!|||.!!|||:!!|||.!!|||||||||||||||||| rIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGln 304703 : TATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAA : 304759 233 : IleLysIleGlnThrLeuArgLeuGluAsnLeuArgLysAspGlyLysAlaLeuLysA : 252 ||| ! ||| ! !! !||||||! :!!||| !!!...! !:!!:!! : IleAspIleValMetSerArgLeuGlyAspLeuValAsnSerLysGluSer------S 304760 : ATTGATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCA------T : 304813 253 : snGlyIleGluAspHisLeuAlaValIleValSerGluHisValGluIleLeuArg : 270 :!! !:!!!!: ! !..||| !! !||||||..!.!.|||:!!..!||||||||| erAspLeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIleLeuArg 304814 : CTGATTTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTAAGG : 304869 vulgar: gi|815911888|ref|XP_012241385.1| 117 270 . KQ414889.1 304413 304869 + 295 M 56 168 G 0 3 M 76 228 G 2 0 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304414 304869 295 + . gene_id 15 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304414 304869 . + . KQ414889.1 exonerate:protein2genome:local exon 304414 304869 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 304414 304869 295 + . alignment_id 15 ; Query gi|815911888|ref|XP_012241385.1| ; Align 304414 118 168 ; Align 304585 174 228 ; Align 304813 252 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 273 Query range: 44 -> 270 Target range: 204302 -> 204980 45 : AsnLysPheGluLysIleValSerValLeuLeuIleIleIleCysCysSerIleLeuG : 64 ::! !||| !!:!:!!||| !! !:!! ! !:!!:!! ! :::... SerProPheThrArgLeuValArgArgIleGluHisValValThrTyrPheLeuPheP 204303 : TCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGTAGTCACCtatttcctcttct : 204360 65 : lnPheValIleValProPheGlyTyrTyrIleLeuPheTyrGluLysAspMetAsnMe : 83 ...:!!||||||||| ! !! |||:!:!!!.!. ! ||||||:!! !!.!! heLeuMetIleValProGlyLeuLeuTyrValPheLeuLysGluLysAsnGlyLysIl 204361 : ttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAGAACGGCAAAAT : 204417 84 : tLysIleLysPheLeuGlyProLeuAlaPheCysValThrAlaLeuPheLysTyrGly : 102 :::::!:|||.!!|||||||||:!!!.! !||| !! ! !!!!|||||||||..! eArgLeuLysIleLeuGlyProIleValAsnCysSerIleGlnPhePheLysTyrSer 204418 : TCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCATACAGTTCTTCAAGTACTCC : 204474 103 : TyrLeuGlyValLysSerSerGluLeuGlyArgCysValLysHisValLysLysAsnT : 122 !:!! ! !::!! !..!:!!:!! !!:! !!:!!!!. !:!!!:!::::!!| ValIleLeuTyrArgIleAspLysIleGlnLysSerLeuAsnThrIleArgArgAspT 204475 : GTCATTCTCTACCGGATCGACAAAATTCAGAAGAGTTTGAACACCATCAGACGCGACT : 204534 123 : rpLysMetLeuGlnAspLysAspHisArgAlaIleMetValArgTyrValThrMetGl : 141 ||! ! ! ! !||| !!::!!||| !|||.!. ! ! ! !.!! !!!:|| rpIleGluAlaThrAsp---GluAsnArgLeuIlePheArgSerLysAlaLysIleGl 204535 : GGATAGAGGCTACGGAT---GAAAATCGGTTGATTTTCCGCTCGAAAGCGAAGATCGG : 204588 142 : yArgAsnLeuIleThrLeuCysAlaAlaPheMetTyrThrGlyGlyLeuSerTyrHis : 160 ||||!..:!!:!: !:!!...|||||| !|||||| !|||||||||!!!|||... yArgArgValLeuLeuIleAlaAlaAlaThrMetTyrGlyGlyGlyLeuCysTyrArg 204589 : GCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGTACGGCGGTGGTTTGTGTTACAGG : 204645 161 : ThrIleMetProLeuLeuSerLysLysLysIleAsn<->GluAsnIleThrIleArgP : 179 ||||||:!:|||||||||!!! !! !! :!!!.. !!:|||:!!|||||||||| ThrIleLeuProLeuLeuArgGlyThrIleValThrProAspAsnValThrIleArgP 204646 : ACGATTCTTCCTTTGTTGAGAGGAACGATCGTAACACCTGATAACGTTACCATAAGGC : 204705 180 : roLeuThrTyrProGlyTyrGluAlaPhePheAspIleGlnGluSerProThrTyrGl : 198 ||||| !!! !|||! !||| ...||||||::: |||...||||||!.!||||| roLeuProCysProValTyrPheValPhePheAsnGluGlnArgSerProAsnTyrGl 204706 : CGTTGCCGTGTCCGGTTtactttgttttctttaacGAGCAACGTTCGCCGAATTACGA : 204762 199 : uIleValTyrCysMetHisCysValTyrValLeuIleThrGlyAsnIleThrMetAla : 217 |||||||!:! :!!!!. !:!! !! !!!!:!!||| ! !:!!! !! !.! uIleValPheIleLeuGlnIleMetAlaGlyPheValThrTyrAlaValIleSerGly 204763 : GATTGTTTTTATACTGCAAATTATGGCTGGTTTTGTTACTTACGCTGTTATCAGCGGC : 204819 218 : AlaTyrSerLeuThrAlaIlePheThrThrHisAlaCysGlyGlnIleLysIleGlnT : 237 .!!! !.!!:!! !|||:!:|||..! !|||||||||.!!..!:!:!:!||| !. ThrCysGlyMetCysAlaLeuPheValLeuHisAlaCysSerMetLeuArgIleLeuV 204820 : ACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGCGTGCAGCATGCTGAGGATTTTGG : 204879 238 : hrLeuArgLeuGluAsnLeuArgLysAspGlyLysAlaLeuLysAsnGlyIleGluAs : 256 .! !!:!:!!.!. ||| ! ! ! !.! ! ! !:!!!.. !:!:.!. alAsnLysMetAsnAlaLeuValAspLysAlaAspMetThrGluThrLeuValHisAr 204880 : TGAACAAGATGAACGCACTTGTGGATAAGGCGGACATGACCGAGACACTTGTGCACAG : 204936 257 : pHisLeuAlaValIleValSerGluHisValGluIleLeuArg : 270 ! :!!|||! !||||||..! ! !!...!:!!||| !||| gLysIleAlaAspIleValGluTyrGlnThrLysIleLysArg 204937 : GAAGATCGCTGATATTGTTGAATATCAGACGAAGATAAAGAGG : 204980 vulgar: gi|815911888|ref|XP_012241385.1| 44 270 . KQ414889.1 204302 204980 + 273 M 83 249 G 1 0 M 44 132 G 0 3 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204303 204980 273 + . gene_id 16 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204303 204980 . + . KQ414889.1 exonerate:protein2genome:local exon 204303 204980 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 204303 204980 273 + . alignment_id 16 ; Query gi|815911888|ref|XP_012241385.1| ; Align 204303 45 249 ; Align 204552 129 132 ; Align 204687 173 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 268 Query range: 21 -> 270 Target range: 262849 -> 263602 22 : HisThrPheGlnPheCysHisTrpIleLeuLysProLeuGlyIleTyrPhePheLeuH : 41 :!!!:!.!.|||.!. !!..|||:!:|||||||||:!!||| !!:: ||| TyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrp---ProLeuS 262850 : TACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGG---CCACTGT : 262904 42 : isAspHisValAsnLysPheGluLysIleValSerValLeuLeuIleIleIleCysCy : 60 !! ! :!!:::!:!.!.|||::!|||:!!!!! !!|||||||||:!!:!!|||! erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 61 : sSerIleLeuGlnPheValIleValProPheGlyTyrTyrIleLeuPheTyrGluLys : 79 !!!!:!!:!!! !! !..!:!!:!!|||! ! ! !:!!|||:!!.!. ! ! :!! rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 80 : AspMetAsnMetLysIleLysPheLeuGlyProLeuAlaPheCysValThrAlaLeuP : 99 :!!.!.:!!||||||:!::!! !!||||||||||||!.! !! !!..!!.!:!!. AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 100 : heLysTyrGlyTyrLeuGlyValLysSerSerGluLeuGlyArgCysValLysHisVa : 118 !!!!.||| !!::||| !:!! ! |||!.!!!::!! ! !!||||||:!!||||| leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 119 : lLysLysAsnTrpLysMetLeuGlnAspLysAspHisArgAlaIleMetValArgTyr : 137 |:!!:!!:!!||| !!::!! !!!: !!!:! !||||||:!!!:! !! lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 138 : ValThrMetGlyArgAsnLeuIleThrLeuCysAlaAlaPheMetTyrThrGlyGlyL : 157 !.!! ! |||||| !!:!! !.!!! !|||||| !|||||| ! |||.!! !: AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 158 : euSerTyrHisThrIleMetProLeuLeuSerLys<-><->LysLysIleAsnGluAs : 174 !!!!! ! ! !:!!! !!!!! !!!!:!! :!! ! !||||||!. etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 175 : nIleThrIleArgProLeuThrTyrProGlyTyrGluAlaPhePheAspIleGlnGlu : 193 !! !! !:!!||| !||| !!! !|||! !|||:!!! !.!!.!! :!!.!. ! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 194 : SerProThrTyrGluIleValTyrCysMetHisCysValTyrValLeuIleThrGlyA : 213 !:!|||||| !!|||||| !! !..!! !!!.! !:!!! ! !!!!|||..! ! AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 214 : snIleThrMetAlaAlaTyrSerLeuThrAlaIlePheThrThrHisAlaCysGlyGl : 232 ! !|||:!:!.!|||!:!.!!:!!||||||:!:|||.!! !|||||||||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 233 : nIleLysIle<->GlnThrLeuArgLeuGluAsnLeuArgLysAspGlyLysAlaLeu : 250 |:!:!!.:!: ..!:!!! !! ! !||| !:!!!.!:!!..! !! ! ! ! ! nLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsn 263484 : GTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAAT : 263540 251 : LysAsnGlyIleGluAspHisLeuAlaValIleValSerGluHisValGluIleLeuA : 270 |||||| ! ! !.!.:!!!.!|||||||||..!.!.|||:!!..!:!!|||| LysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeuA 263541 : AAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTGA : 263600 271 : rg : 270 || rg 263601 : GG : 263602 vulgar: gi|815911888|ref|XP_012241385.1| 21 270 . KQ414889.1 262849 263602 + 268 M 16 48 G 1 0 M 130 390 G 0 6 M 67 201 G 0 3 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262850 263602 268 + . gene_id 17 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262850 263602 . + . KQ414889.1 exonerate:protein2genome:local exon 262850 263602 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 262850 263602 268 + . alignment_id 17 ; Query gi|815911888|ref|XP_012241385.1| ; Align 262850 22 48 ; Align 262898 39 390 ; Align 263294 169 201 ; Align 263498 236 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 224 Query range: 281 -> 395 Target range: 280025 -> 280441 282 : LeuPheLeuIleGluValMetLeuSerThrLeuLeuIleCysLeuLeuGluTyrTyrC : 301 |||! !! !.!!.!.:!!:!::!!:!!! !:!! !.!! !:!!! !..!! ! LeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerLeuSerV 280026 : TTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGTTGTCAG : 280083 302 : ysMetMetGluTrpGluThrSerAspSerValAlaIleSerThrTyrIleIleLeuLe : 320 !.!. !||||||||| !!:!|||:!!:!!!.!! ! !||||||:!!!!:!!!|| alPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLe 280084 : TTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCT : 280140 321 : uThrSerPheThrPheAsnIleLeuIleTyrCysTyrValGlyGluLeuLeuLeuGly : 339 |! !|||!!.|||||||||:!!!!!||| !||||||:!!||||||:!!|||! !! ! uIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGlu 280141 : CATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAA : 280197 340 : Gln >>>> Target Intron 1 >>>> GlySerGluIleAlaThrAlaLeuTy : 349 ||| 74 bp !!! !:!!:!!!.!..!:!! !|| Gln++ ++CysLeuLysValGlyValSerThrTy 280198 : Caggt.........................agTGCTTAAAAGTCGGCGTGTCAACTTA : 280301 350 : rAspIleGluTrpTyrAsnLeuProGlyArgLysAlaArgAspIleValLeuValLeu : 368 | |||!!:||||||..!|||||||||!:!||||||!:!! !:!::!!|||:!!!!! rMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePhe 280302 : CATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTC : 280358 369 : AlaIleSerLysTyrProLeuLysLeuThrAlaGlyLysIleLeuValLeuSerMetA : 388 |||:!:|||!!.! ! !!:!!|||||||||||||||||||||:!!! !||||||:!:! AlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuS 280359 : GCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAA : 280418 389 : snThrPheGlyValValArgVal : 395 :!!:!||| !! !|||!!!:!! erSerPheCysSerValSerIle 280419 : GCAGCTTCTGCAGCGTGAGTATC : 280441 vulgar: gi|815911888|ref|XP_012241385.1| 281 395 . KQ414889.1 280025 280441 + 224 M 59 177 5 0 2 I 0 70 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280026 280441 224 + . gene_id 18 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280026 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280026 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280441 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280441 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280026 280441 224 + . alignment_id 18 ; Query gi|815911888|ref|XP_012241385.1| ; Align 280026 282 177 ; Align 280277 341 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 219 Query range: 303 -> 395 Target range: 286878 -> 287228 304 : GluTrpGluThrSerAspSerValAlaIleSerThrTyrIleIleLeuLeuThrSerP : 323 ||||||||| !|||!!:!!!:!!!.!! ! !|||||| !! ||||||..!|||| GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerP 286879 : GAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTT : 286936 324 : heThrPheAsnIleLeuIleTyrCysTyrValGlyGluLeuLeuLeuGlyGln >>> : 341 |||||||||||:!!!!!||| !||||||:!!||||||:!!|||! !! !||| heThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286937 : TCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt... : 286992 342 : > Target Intron 1 >>>> GlySerGluIleAlaThrAlaLeuTyrAspIleG : 352 74 bp !!! !:!!:!!!.! !:!! !||| |||! ++CysLeuLysValGlyLeuSerThrTyrMetIleA 286993 : ......................agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCG : 287097 353 : luTrpTyrAsnLeuProGlyArgLysAlaArgAspIleValLeuValLeuAlaIleSe : 371 !:||||||..!|||||||||!:!! !|||!:!! !:!::!!|||:!!!!!|||:!:|| spTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSe 287098 : ACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTC : 287154 372 : rLysTyrProLeuLysLeuThrAlaGlyLysIleLeuValLeuSerMetAsnThrPhe : 390 |!!.! ! !!:!!|||||||||||||||||||||:!!! !||||||:!:!:!!:!||| rAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPhe 287155 : GAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTC : 287211 391 : GlyValValArgVal : 395 !! !|||!!!:!! CysSerValSerIle 287212 : TGCAGCGTGAGTATC : 287228 vulgar: gi|815911888|ref|XP_012241385.1| 303 395 . KQ414889.1 286878 287228 + 219 M 37 111 5 0 2 I 0 70 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286879 287228 219 + . gene_id 19 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287228 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287228 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286879 287228 219 + . alignment_id 19 ; Query gi|815911888|ref|XP_012241385.1| ; Align 286879 304 111 ; Align 287064 341 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 200 Query range: 303 -> 390 Target range: 206050 -> 206392 304 : GluTrpGluThrSerAspSerValAlaIleSerThrTyrIleIleLeuLeuThrSerP : 323 |||||||||!.!!:!:!!!!!..!|||:!!! !..!||||||! |||! !! !|||! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 324 : heThrPheAsnIleLeuIleTyrCysTyrValGlyGluLeuLeuLeuGlyGln >>> : 341 !|||||| !:!!!!!||| ||||||:!!|||:!!||||||:!!! !||| ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 342 : > Target Intron 1 >>>> GlySerGluIleAlaThrAlaLeuTyrAspIleG : 352 81 bp ..! !! :!:!.! !.!!! !! ! :!:. ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 353 : luTrpTyrAsnLeuProGlyArgLysAlaArgAspIleValLeuValLeuAlaIleSe : 371 !.||||||..!||||||..!||| ! ||||||..!!!::!!|||:!!:!!|||!!:|| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 372 : rLysTyrProLeuLysLeuThrAlaGlyLysIleLeuValLeuSerMetAsnThrPhe : 390 |!!.||||||:!!||||||||||||||||||!!:!!!! !:!!|||:!: !!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 vulgar: gi|815911888|ref|XP_012241385.1| 303 390 . KQ414889.1 206050 206392 + 200 M 37 111 5 0 2 I 0 77 3 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206392 200 + . gene_id 20 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206392 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206392 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206392 200 + . alignment_id 20 ; Query gi|815911888|ref|XP_012241385.1| ; Align 206051 304 111 ; Align 206243 341 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 185 Query range: 303 -> 397 Target range: 272836 -> 273188 304 : GluTrpGluThrSerAspSerValAlaIleSerThrTyrIleIleLeuLeuThrSerP : 323 |||||| ! !|||! ! !::!:!!!!!||||||.!!!!::!!|||! !|||. GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 324 : heThrPheAsnIleLeuIleTyrCysTyrValGlyGluLeuLeuLeuGlyGln >>> : 341 !.||||||||||||...||| ||||||:!!||||||:!!||| !! !::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 342 : > Target Intron 1 >>>> GlySerGluIleAlaThrAlaLeuTyrAspIleG : 352 70 bp ...:::|||... !!.!:!!||| ! . ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 353 : luTrpTyrAsnLeuProGlyArgLysAlaArgAspIleValLeuValLeuAlaIleSe : 371 !.|||||| !!|||||||||!:! ! !! !|||:!::!!|||:!!:!!:!!! !!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 372 : rLysTyrProLeuLysLeuThrAlaGlyLysIleLeuValLeuSerMetAsnThrPhe : 390 !!.. ! !:!!|||:!!|||||||||!:!|||:!! !:!!|||:!! !!|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 391 : GlyValValArgValGluIle : 397 |||! !|||||| :::::: GlyAspValArgSerGlnLeu 273166 : GGCGATGTACgttctcaatta : 273188 vulgar: gi|815911888|ref|XP_012241385.1| 303 397 . KQ414889.1 272836 273188 + 185 M 37 111 5 0 2 I 0 66 3 0 2 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273188 185 + . gene_id 21 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273188 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273188 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273188 185 + . alignment_id 21 ; Query gi|815911888|ref|XP_012241385.1| ; Align 272837 304 111 ; Align 273018 341 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 339 -> 398 Target range: 297641 -> 297818 340 : GlnGlySerGluIleAlaThrAlaLeuTyrAspIleGluTrpTyrAsnLeuProGlyA : 359 |||!.!..!:!!.!!!.!!.!||| !|||:!!||||||||||||||||||||| !! GlnAlaGluLysPheGlyAsnAlaAlaTyrAsnIleGluTrpTyrAsnLeuProProA 297642 : CAGGCTGAAAAATTCGGCAATGCAGCTTATAACATCGAATGGTACAACTTACCGCCAA : 297699 360 : rgLysAlaArgAspIleValLeuValLeuAlaIleSerLysTyrProLeuLysLeuTh : 378 .!!:!|||! !|||:!:||||||:!!:!!!.!|||:!!|||!:!|||! !!:!||||| snArgAlaLeuAspLeuValLeuMetIleGlyIleAlaLysPheProProArgLeuTh 297700 : ACAGGGCTCTCGATCTGGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCAC : 297756 379 : rAlaGlyLysIleLeuValLeuSerMetAsnThrPheGlyValValArgValGluIle : 397 |...|||||||||... :::|||!!:|||||||||.!!!.!|||||| ::: rGlyGlyLysIlePheAspIleSerIleAsnThrPheSerAlaValArgArgGlnSer 297757 : AggtggaaaaatattcgatatatCGATAAACACGTTCAGTGCCGTACGTAgacaaagt : 297813 398 : Leu : 398 ||| Leu 297814 : tta : 297818 vulgar: gi|815911888|ref|XP_012241385.1| 339 398 . KQ414889.1 297641 297818 + 156 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297642 297818 156 + . gene_id 22 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297642 297818 . + . KQ414889.1 exonerate:protein2genome:local exon 297642 297818 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297642 297818 156 + . alignment_id 22 ; Query gi|815911888|ref|XP_012241385.1| ; Align 297642 340 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 299 -> 340 Target range: 210651 -> 210774 300 : TyrCysMetMetGluTrpGluThrSerAspSerValAlaIleSerThrTyrIleIleL : 319 !:! !:!: !||||||!!::!!!.!||| !!:!!::!! ! !|||||||||:!!| PheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValL 210652 : TTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTAC : 210709 320 : euLeuThrSerPheThrPheAsnIleLeuIleTyrCysTyrValGlyGluLeuLeuLe : 338 ||||||||||| !!||||||||||||!!!|||!:!||||||:!!||||||:!!||| euLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAl 210710 : TCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGC : 210766 339 : uGlyGln : 340 !! !||| aGluGln 210767 : TGAACAg : 210774 vulgar: gi|815911888|ref|XP_012241385.1| 299 340 . KQ414889.1 210651 210774 + 124 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210652 210774 124 + . gene_id 23 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 210652 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210652 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210652 210774 124 + . alignment_id 23 ; Query gi|815911888|ref|XP_012241385.1| ; Align 210652 300 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 295 -> 338 Target range: 305076 -> 305205 296 : LeuLeuGluTyrTyrCysMetMetGluTrpGluThrSerAspSerValAlaIleSerT : 315 !!!||| ||| ..!!!:||||||!:!|||:!!!!!|||::!:!!!!!| PheLeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrT 305077 : TTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAA : 305134 316 : hrTyrIleIleLeuLeuThrSerPheThrPheAsnIleLeuIleTyrCysTyrValGl : 334 |||||! !:!:||||||! !||| ! ||||||||||||!!!|||! ||||||:!!|| hrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGl 305135 : CATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGG : 305191 335 : yGluLeuLeuLeu : 338 ||||:!!|||:!! yGluIleLeuMet 305192 : TGAGATTCTTATG : 305205 vulgar: gi|815911888|ref|XP_012241385.1| 295 338 . KQ414889.1 305076 305205 + 122 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305077 305205 122 + . gene_id 24 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305077 305205 . + . KQ414889.1 exonerate:protein2genome:local exon 305077 305205 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305077 305205 122 + . alignment_id 24 ; Query gi|815911888|ref|XP_012241385.1| ; Align 305077 296 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 329 -> 401 Target range: 224466 -> 224682 330 : TyrCysTyrValGlyGluLeuLeuLeuGlyGlnGlySerGluIleAlaThrAlaLeuT : 349 ||| !||| !! !..!|||!!!!!! ||| ...:::|||... !!.!! !| TyrHisTyrPheLeuSerLeuPhePheProGlnCysGluLysIleGlyGlnValSerT 224467 : TACCACTATTTTTTATCGCTATTTTTTCCtcagtgtgaaaaaattggacaAGTGTCGT : 224524 350 : yrAspIleGluTrpTyrAsnLeuProGlyArgLysAlaArgAspIleValLeuValLe : 368 || |||!!:||||||...||| !!|||!.!||| !! ! ! !:!!|||:!!:! yrMetIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIl 224525 : ACATGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAAT : 224581 369 : uAlaIleSerLysTyrProLeuLysLeuThrAlaGlyLysIleLeuValLeuSerMet : 387 !|||!!:|||!!.! ! !!:!!|||||||||||||||!!.!!::!!! !|||!!!:!: eAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeu 224582 : CGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTA : 224638 388 : AsnThrPheGlyValValArgValGluIleLeuAlaSerLeu : 401 !.!|||||||||! !|||!!!:!! !||| !!.!!!!:!! ThrThrPheGlyAspValSerIleThrIleThrValThrIle 224639 : ACCACTTTCGGTGACGTAAGTATCACAATCACCGTCACTATA : 224682 vulgar: gi|815911888|ref|XP_012241385.1| 329 401 . KQ414889.1 224466 224682 + 121 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224467 224682 121 + . gene_id 25 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224467 224682 . + . KQ414889.1 exonerate:protein2genome:local exon 224467 224682 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224467 224682 121 + . alignment_id 25 ; Query gi|815911888|ref|XP_012241385.1| ; Align 224467 330 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 298 -> 356 Target range: 258249 -> 258423 299 : TyrTyrCysMetMetGluTrpGluThrSerAspSerValAlaIleSerThrTyrIleI : 318 :::||| ......||||||...|||...||| :::|||:::|||.!!! PheTyrTyrPheGlnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheM 258250 : ttttattattttcaggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTA : 258307 319 : leLeuLeuThrSerPheThrPheAsnIleLeuIleTyrCysTyrValGlyGluLeuLe : 337 !::!!|||! !|||...:::|||||||||...::: ||||||:!!||||||:!!|| etIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLe 258308 : TGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATT : 258364 338 : uLeuGlyGlnGlySerGluIleAlaThrAlaLeuTyrAspIleGluTrpTyrAsnLeu : 356 | !! !|||! ! ! |||||| ::: !!:!!.!. !::|||||| uThrGluGlnValProGluIle***LeuIleValThrTyrValHisLysTrpAsnLeu 258365 : AACAGAACAGGTACCagagatttaattaattgtcaCATATGTACACAAATGGaacttg : 258421 vulgar: gi|815911888|ref|XP_012241385.1| 298 356 . KQ414889.1 258249 258423 + 117 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258250 258423 117 + . gene_id 26 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 258250 258423 . + . KQ414889.1 exonerate:protein2genome:local exon 258250 258423 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258250 258423 117 + . alignment_id 26 ; Query gi|815911888|ref|XP_012241385.1| ; Align 258250 299 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 303 -> 394 Target range: 277371 -> 277716 304 : GluTrpGluThrSerAspSerValAlaIleSerThrTyrIleIleLeuLeuThrSerP : 323 ||||||... !|||||| ! !.!!!!:!!!|||:!!.!!!!::!!|||! !|||. GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 324 : heThrPheAsnIleLeuIleTyrCys{T} >>>> Target Intron 1 >>>> : 332 !. |||||||||... ! |||{|} 72 bp etCysPheAsnIlePheThrValCys{T}-+ ++ 277430 : TgtgtttcaacatttttacAGTATGC{T}at.........................ag : 277527 333 : {yr}ValGlyGluLeuLeuLeuGlyGlnGlySerGluIleAlaThrAlaLeuTyrAsp : 350 {||}..! !..!! ! !!!! !!||| !!!.!:!!:!!!.! !!.!:!!||| {yr}ThrHisArg***AsnPheArgGlnCysLysLysValGlyGluValValTyrMet 277528 : {AT}ACTCACCGATGAAATTTCCGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATG : 277582 351 : IleGluTrpTyrAsnLeuProGlyArgLysAlaArgAspIleValLeuValLeuAlaI : 370 ! .!.|||||| !!||||||! !!:! ! !! !:!!:!::!!|||:!!:!!:!!! ThrAsnTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerA 277583 : ACGAATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAA : 277642 371 : leSerLysTyrProLeuLysLeuThrAlaGlyLysIleLeuValLeuSerMetAsnTh : 389 !|||!.. :::|||:::||||||||||||:::::: :::|||:!! !!|| rgSerSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrTh 277643 : GATCTAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACAC : 277699 390 : rPheGlyValValArg : 394 |||||||! !|||||| rPheGlyAspValArg 277700 : GTTCGGCGATGTACGT : 277716 vulgar: gi|815911888|ref|XP_012241385.1| 303 394 . KQ414889.1 277371 277716 + 116 M 28 84 S 0 1 5 0 2 I 0 68 3 0 2 S 1 2 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277716 116 + . gene_id 27 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277456 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277457 277458 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 277457 277528 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277527 277528 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277529 277716 . + . KQ414889.1 exonerate:protein2genome:local exon 277529 277716 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277716 116 + . alignment_id 27 ; Query gi|815911888|ref|XP_012241385.1| ; Align 277372 304 84 ; Align 277531 333 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 339 -> 399 Target range: 238625 -> 238805 340 : GlnGlySerGluIleAlaThrAlaLeuTyrAspIleGluTrpTyrAsnLeuProGlyA : 359 ||| !!! !:!!:!!!.! !!.!:!!||| ! !!!:|||||| !!|||||| !| GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 360 : rgLysAlaArgAspIleValLeuValLeuAlaIleSerLysTyrProLeuLysLeuTh : 378 ||!:! !! !|||:!!:!!|||:!!:!! ! !|||!!. !:!!|||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 379 : rAlaGlyLysIleLeuValLeuSerMetAsnThrPheGlyValValArgValGluIle : 397 ||||||||||:!!||| !:!!|||:!: !!|||||||||! !|||!!!! ! ! ! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 398 : LeuAla : 399 |||||| LeuAla 238798 : CTTGCT : 238805 vulgar: gi|815911888|ref|XP_012241385.1| 339 399 . KQ414889.1 238625 238805 + 111 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238805 111 + . gene_id 28 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238805 111 + . alignment_id 28 ; Query gi|815911888|ref|XP_012241385.1| ; Align 238626 340 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 301 -> 340 Target range: 224317 -> 224434 302 : MetMetGluTrpGluThrSerAspSerValAlaIleSerThrTyrIleIleLeuLeuT : 321 .!....||||||...:::||| !!! !..!::! !||||||.!!|||||||||! PheGlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuM 224318 : TTTCaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCA : 224375 322 : hrSerPheThrPheAsnIleLeuIleTyrCysTyrValGlyGluLeuLeuLeuGlyGl : 340 !|||...||||||||||||...|||:::||||||::!|||||||||:!! !! !|| etSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl 224376 : TGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAca : 224432 341 : n : 340 | n 224433 : g : 224434 vulgar: gi|815911888|ref|XP_012241385.1| 301 340 . KQ414889.1 224317 224434 + 108 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224318 224434 108 + . gene_id 29 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224318 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224318 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224318 224434 108 + . alignment_id 29 ; Query gi|815911888|ref|XP_012241385.1| ; Align 224318 302 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 339 -> 393 Target range: 244655 -> 244817 340 : GlnGlySerGluIleAlaThrAlaLeuTyrAspIleGluTrpTyrAsnLeuProGlyA : 359 ||| !!! !:!!:!!!.! !!.!:!!||| ! !!!:|||||| !!|||||| !| GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 360 : rgLysAlaArgAspIleValLeuValLeuAlaIleSerLysTyrProLeuLysLeuTh : 378 ||!:! !! !|||:!!:!!|||:!!:!! ! !|||!!. !:!!:!!:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 379 : rAlaGlyLysIleLeuValLeuSerMetAsnThrPheGlyValVal : 393 ||||||||||:!!||| !:!!|||:!: !!|||||||||! !||| rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspVal 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTA : 244817 vulgar: gi|815911888|ref|XP_012241385.1| 339 393 . KQ414889.1 244655 244817 + 107 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244817 107 + . gene_id 30 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244817 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244817 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244817 107 + . alignment_id 30 ; Query gi|815911888|ref|XP_012241385.1| ; Align 244656 340 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 295 -> 340 Target range: 214605 -> 214740 296 : LeuLeuGluTyrTyrCysMetMetGluTrpGluThrSerAspSerValAlaIleSerT : 315 :::::::::::: ::: ||||||.!.:!!!:!:!!! !..!.!!! ! !| IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 316 : hrTyrIleIleLeuLeuThrSerPheThrPheAsnIleLeuIleTyrCysTyrValGl : 334 |||||:!::!:|||! !! !|||...||||||||||||...|||:::||||||:!!|| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 335 : yGluLeuLeuLeuGlyGln : 340 |||||||:!!! !! !||| yGluLeuValSerGluGln 214721 : CGAGCTTGTGTCTGAACAG : 214740 vulgar: gi|815911888|ref|XP_012241385.1| 295 340 . KQ414889.1 214605 214740 + 105 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 214740 105 + . gene_id 31 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 214740 105 + . alignment_id 31 ; Query gi|815911888|ref|XP_012241385.1| ; Align 214606 296 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 339 -> 393 Target range: 254271 -> 254433 340 : GlnGlySerGluIleAlaThrAlaLeuTyrAspIleGluTrpTyrAsnLeuProGlyA : 359 ||| !!! !:!!:!!!.! !!.!:!!||| ! !!!:|||||| !!|||||| !| GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 360 : rgLysAlaArgAspIleValLeuValLeuAlaIleSerLysTyrProLeuLysLeuTh : 378 ||!:! !! !|||:!!:!!|||:!!:!!.!! !|||!!. !:!!:!!:!!|| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 379 : rAlaGlyLysIleLeuValLeuSerMetAsnThrPheGlyValVal : 393 |||||||||||||... :::|||:!: !!|||||||||! !||| rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspVal 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTA : 254433 vulgar: gi|815911888|ref|XP_012241385.1| 339 393 . KQ414889.1 254271 254433 + 105 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254433 105 + . gene_id 32 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254433 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254433 105 + . alignment_id 32 ; Query gi|815911888|ref|XP_012241385.1| ; Align 254272 340 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 187 -> 270 Target range: 202712 -> 202960 188 : PhePheAspIleGlnGluSerProThrTyrGluIleValTyrCysMetHisCysValT : 207 .!!.!!|||:!!::! ! ||||||..! !!|||||| !!!:!! !!:!.. !||| IleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleValA 202713 : ATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAG : 202770 208 : yrValLeuIleThrGlyAsnIleThrMetAlaAlaTyrSerLeuThrAlaIlePheTh : 226 !|||:!!:!!! ! !..!:!!|||:!:!.!|||! !!!!|||||||||:!:|||.! laValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAl 202771 : CTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGC : 202827 227 : rThrHisAlaCysGlyGlnIleLysIleGlnThrLeuArgLeuGluAsnLeuArgLys : 245 !..!|||! !|||||||||!!: ! :!! !! ! ! !!||||||:!!||| ! ! aValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeu---Met 202828 : GGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTG---ATG : 202881 246 : AspGlyLysAla--LeuLysAsnGlyIleGluAspHisLeuAlaValIleValSerGl : 264 ||||||::::!!##! !:!! ! ..!:!:.!.! !...:!!!.!..!|||||||||:! AspGlyArgSer##TyrGlu***AsnValAsnGlyArgMetValThrIleValSerGl 202882 : GATGGTCGTTCGGATATGAGTAAAATGTGAATGGCAGAATGGTGACCATCGTGAGCCA : 202940 265 : uHisValGluIleLeuArg : 270 !|||:!!..!||||||!:! nHisIleArgIleLeuLys 202941 : ACACATACGGATACTGAAA : 202960 vulgar: gi|815911888|ref|XP_012241385.1| 187 270 . KQ414889.1 202712 202960 + 104 M 56 168 G 1 0 M 5 15 F 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202713 202960 104 + . gene_id 33 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202713 202960 . + . KQ414889.1 exonerate:protein2genome:local exon 202713 202960 . + . insertions 0 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local similarity 202713 202960 104 + . alignment_id 33 ; Query gi|815911888|ref|XP_012241385.1| ; Align 202713 188 168 ; Align 202881 245 15 ; Align 202898 250 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 339 -> 394 Target range: 264723 -> 264888 340 : GlnGlySerGluIleAlaThrAlaLeuTyrAspIleGluTrpTyrAsnLeuProGlyA : 359 ||| !!!.!:!!:!!!.! !!.!:!!||| .!.|||||| !!|||||| !! GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 360 : rgLysAlaArgAspIleValLeuValLeuAlaIleSerLysTyrProLeuLysLeuTh : 378 :! ! !! !|||:!::!!|||:!!:!! !! !|||!.. !!!!|||!!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 379 : rAlaGlyLysIleLeuValLeuSerMetAsnThrPheGlyValValArg : 394 |||||||||||||||| !:!!|||||| !!||||||.!!! !|||||| rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspValArg 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTACGT : 264888 vulgar: gi|815911888|ref|XP_012241385.1| 339 394 . KQ414889.1 264723 264888 + 103 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264888 103 + . gene_id 34 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264888 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264888 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264888 103 + . alignment_id 34 ; Query gi|815911888|ref|XP_012241385.1| ; Align 264724 340 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815895919|ref|XP_003485159.2| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 182 -> 271 Target range: 1677614 -> 1677887 183 : GlyLeuAspCysSerPheMetThrThrMetLeuHisValSerAlaGlnPheLysLe : 201 |||!!!|||...||| ..! !!!::!!|||!.!:!!||| !!|||!:!:! GlyPheAspAlaSerAlaCysValLeuIleIleHisAlaAlaAla***PheArgIl 1677615 : GGTTTCGACGCGTCAGCGTGTGTGCTGATAATACACGCGGCCGCATAATTCAGAAT : 1677669 202 : uIleAsnThrTrpIleSerAsnIleGlyThrGlu<-><->IleAsnCysAsnProA : 218 !:!!..! ! !:!:||| !!||| !|||||| !:!! .!. !! eLeuGlyArgLeuLeuSerTyrIlePheThrGluGluLeuTyrAspLysGluIleS 1677670 : ACTTGGCCGACTGCTGTCATATATTTTCACCGAGGAACTTTACGATAAAGAGATTA : 1677726 219 : snTyrThrGlnLysIleLysValAspLeuThrArgCysIleArgHisHisGlnArg : 236 :! !:!!:!!!!:..! ... :::|||:!:|||!..||| ! ! erIleGlnLysGlnMetSerGlnLysPheGluLysCysLeuArgArgHisTyrLeu 1677727 : GCATACAGAAGCAAATGTCGcagaaattcgagaaatgcTTGCGTCGACACTATTTG : 1677780 237 : IleIleHisValValAsnGluValAsnAsnLeuLeuThrProIleValPheLeuGl : 255 :!!||| !! !|||.!.|||:::|||||||||..!! ! !! !:!!.!.||||| LeuIleAspTyrValGluGluLeuAsnAsnLeuPheLysTyrThrLeuLeuLeuGl 1677781 : CTCATTGACTACGTAGAGgaattgaataatttgttCAAATACACCCTTCTGTTACA : 1677837 256 : nIleLeuThrSerGlyIleGluValCysLeuSerGlyTyrAlaIleLeu : 271 |!!::!!||||||.!!:!: !:!!|||:!!|||||||||! ! !||| nMetMetThrSerSerLeuLeuIleCysMetSerGlyTyrGluCysLeu 1677838 : GATGATGACCTCGAGTTTGTTAATCTGTATGTCTGGTTACGAATGTTTA : 1677887 vulgar: gi|815895919|ref|XP_003485159.2| 182 271 . KQ414915.1 1677614 1677887 + 116 M 30 90 G 0 6 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1677615 1677887 116 + . gene_id 1 ; sequence gi|815895919|ref|XP_003485159.2| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1677615 1677887 . + . KQ414915.1 exonerate:protein2genome:local exon 1677615 1677887 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1677615 1677887 116 + . alignment_id 1 ; Query gi|815895919|ref|XP_003485159.2| ; Align 1677615 183 90 ; Align 1677711 213 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909022|ref|XP_012240158.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor Or2-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 1057 Query range: 22 -> 380 Target range: 1685883 -> 1690085 23 : AlaLeuValTyrGlyValTyrValAsnValValAspIleTyrHisAsnLeuHisAs : 41 |||||| !||||||||||||||||||||| !|||||| !|||!:!!!! !!:! AlaLeuSerTyrGlyValTyrValAsnValAsnAspIleLeuHisSerPheAspAs 1685884 : GCCCTTTCTTACGGCGTTTACGTGAACGTAAACGATATTCTTCACAGCTTCGATGA : 1685938 42 : nLeuAsp >>>> Target Intron 1 >>>> HisCysIlePheLeuAlaSe : 50 !|||..! 1431 bp |||||||||||||||.!!!! pLeuSer++ ++HisCysIlePheLeuThrCy 1685939 : TCTGAGCgt.........................agcATTGCATCTTTCTGACTTG : 1687396 51 : rAsnThrLeuAsnIleIleLeuAlaMetPheLysLeuSerValLeuHisPheTyrL : 69 !||||||||| !|||:!!||||||!!:||||||:!!! !:!!||| ! !:!!! sAsnThrLeuCysIleLeuLeuAlaIlePheLysIlePheIleLeuSerAsnHisA 1687397 : CAACACACTGTGCATTCTTCTGGCGATATTTAAGATTTTCATACTAAGCAATCACA : 1687453 70 : ysThrGluPheSerAspIleIleValTyrAlaGlnLysHisPheTrpHisIleAsp : 87 :!|||||||||!.!!!:|||:!!:!!|||||||||||||||||||||||| !:!! rgThrGluPheLysGluIleValLeuTyrAlaGlnLysHisPheTrpHisAspAsn 1687454 : GAACGGAATTCAAGGAGATAGTCTTGTACGCGCAGAAGCATTTTTGGCATGATAAT : 1687507 88 : TyrAsnAspAspGluLysIleLeuPheAlaGluCysArgAsnPheCysLysLeuTr : 106 |||!:! ! !!:|||!:!:!:|||!:!!.!!!:|||!:!!..|||||||||||||| TyrSerLysGluGluArgValLeuTyrGlyAspCysGlnArgPheCysLysLeuTr 1687508 : TACAGCAAAGAGGAGAGGGTGCTTTATGGAGATTGCCAGAGGTTCTGCAAACTATG : 1687564 107 : pThrValPheIleLeuLeuValThrGluSerSerLeuSerPheTyrAlaIleValP : 125 |..!:!!.!.|||! !!!!:!!|||:!!:!!|||||| !|||||| !:!!..!| pValIleLeuIleCysPheLeuThrGlnAlaSerLeuValPheTyrPheValThrP 1687565 : GGTCATACTAATATGTTTCCTTACGCAAGCCTCTTTAGTGTTCTACTTTGTCACAC : 1687621 126 : roIleSer{A} >>>> Target Intron 2 >>>> {la}AsnIleGlyAsn : 132 ||:!!!!!{|} 424 bp {||}|||!!:.!!... roLeuThr{A}++ ++{la}AsnMetSerArg 1687622 : CACTCACT{G}gt.........................ag{CA}AATATGAGCCGG : 1688066 133 : AsnGlySerGluArgLeuLeuProPheLysMetTrpValAsnLeuProLeuThrVa : 151 ||| !|||!!:|||:!!|||||||||||||||||||||:!!! !||||||:!!! AsnLysSerAspArgValLeuProPheLysMetTrpValAspTrpProLeuSerAs 1688067 : AACAAATCGGACAGAGTACTTCCATTCAAAATGTGGGTCGATTGGCCGCTATCCGA : 1688123 152 : lThrProTyrTyrGluIleMetPheAlaIleGlu >>>> Target Intron 3 : 163 !|||||||||||||||:!:||||||.!!.!!:!! 179 bp pThrProTyrTyrGluLeuMetPheThrPheGln++ 1688124 : CACACCGTATTACGAGTTGATGTTCACTTTTCAGgt.................... : 1688161 164 : >>>> LeuLeuAlaValGlnGlnIleGlyAlaSerTyrLeuCysProGluGlnP : 179 !|||..!||| ! ||||||||||||:!!|||:!!||| !!!!: !| ++AlaLeuCysValTyrGlnIleGlyAlaAlaTyrIleCysSerAspThrP 1688162 : .....agGCGCTGTGCGTGTATCAAATCGGCGCCGCCTATATCTGCTCCGACACGT : 1688386 180 : heLeuCysValLeuAsnLeuHisValValTyrGlnPheArgMetLeuGlnLysThr : 197 ||!!!|||:!!||||||:!!||||||:!!! !|||||||||!!:|||.!. ! ! ! hePheCysMetLeuAsnMetHisValIleCysGlnPheArgIleLeuAsnTyrArg 1688387 : TTTTCTGCATGCTGAACATGCACGTGATCTGCCAGTTCCGTATACTAAATTACAGA : 1688440 198 : LeuLeuAsnLeuTrpSerAsnIleAspGluGlnThrAspIleAlaAspTyrSerAs : 216 |||||||||:!!||| !! !|||||||||!:!|||:!!!!:.!!!!:|||!!!|| LeuLeuAsnMetTrpProValIleAspGluArgThrAsnMetThrGluTyrThrAs 1688441 : CTGTTGAACATGTGGCCGGTCATCGACGAGCGAACGAACATGACCGAATACACGAA : 1688497 217 : nLysTyrTyrIleIleLeuLysLysCysIleArgLysHisGlnTrpLeuIleGlnL : 235 ||||! !|||! !! |||! ! ! ||||||!:!!!.||||||! !||||||:!!! nLysCysTyrThrLysLeuIleAspCysIleLysAsnHisGlnSerLeuIleGluP 1688498 : CAAATGTTACACCAAGCTGATAGATTGCATCAAAAATCATCAGTCGTTGATCGAGT : 1688554 236 : euAsnAlaGlnLeuGluUnkValPheThrLeuProIleLeuSerHisMetValIle : 253 !! !!.!:!!|||||| |||!:!|||||| !!||||||.!!|||!!:|||:!! heCysValLysLeuGluAsnValTyrThrLeuThrIleLeuGlyHisIleValVal 1688555 : TCTGCGTGAAACTCGAGAACGTGTACACGTTGACTATACTCGGCCACATAGTGGTC : 1688608 254 : PheSerValLeuMetCysPheAspThrTyrGluIleValLeu >>>> Target : 268 ||||||:!!||||||||||||||||||||||||:!!|||||| 81 PheSerLeuLeuMetCysPheAspThrTyrGluValValLeu++ 1688609 : TTCAGCTTGTTGATGTGCTTCGACACGTACGAGGTAGTTCTGgt............ : 1688655 269 : Intron 4 >>>> AlaAsnIleSerSerGluLysArgLeuIlePhePhePheHi : 281 6 bp |||!!.:!! !!!!! !! !||||||||||||!!.||||| ++AlaLysValProThrThrThrArgLeuIlePheLeuPheHi 1688656 : .............agGCAAAGGTACCTACCACGACGCGCCTCATATTCTTATTCCA : 1689508 282 : sMetIleGlySerPheAlaHisIleIlePhePheThrTyrIleCysHisGlyLeuV : 300 |||||||||||||||| !|||||||||||||||||||||! !||| !||||||: sMetIleGlySerPheIleHisIleIlePhePheThrTyrSerCysGlyGlyLeuI 1689509 : CATGATCGGTAGCTTCATCCacataattttcttcacgtACAGTTGTGGTGGTTTGA : 1689565 301 : alGluGluSerThrAsnIleSerIleAlaSerTyrSerGlyTrpTrpValCysLeu : 318 !!|||||||||! !:!!|||:!!! !|||!!!|||:!!||| !|||..! !||| leGluGluSerMetAspIleAlaThrAlaThrTyrAlaGlyMetTrpThrValLeu 1689566 : TAGAAGAGAGTATGGATATTGCAACAGCAACGTATGCAGGAATGTGGACGGTTTTG : 1689619 319 : ProMetSerLysThrGlyLysLysIleArgLysAspMetLysMetMetMetMetLy : 337 ||||||!:!|||..!||||||! !|||||| !:!!||||||:!:|||! :!:!: ProMetAsnLysValGlyLysMetIleArgGlyAsnMetLysLeuMetThrValAr 1689620 : CCAATGAATAAAGTTGGCAAAATGATACGAGGAAATATGAAGTTAATGACCGTAAG : 1689676 338 : sAlaMetArgProCysGlnLeuThrAlaGlyGlyPhePheProValAsnLeuGluT : 356 !:!!:!!!:!|||||| :!!||||||||||||||||||||||||::!|||:!!| gSerLeuGlnProCysCysIleThrAlaGlyGlyPhePheProValSerLeuLysT 1689677 : GTCGTTGCAACCGTGTTGCATAACTGCTGGTGGATTCTTTCCTGTCTCCTTGAAAA : 1689733 357 : hrSerThrAla >>>> Target Intron 5 >>>> IlePheSerLeuGlnL : 365 ||:!!|||||| 278 bp ! !! !||||||| hrAlaThrAla++ +-AspThrLeuLeuGlnL 1689734 : CTGCTACCGCGgt.........................acGATACTTTATTGCAGC : 1690038 366 : euIleSerSerThrMetSerTyrPheAlaLeuMetGlyGluSerSer : 380 ||!!:|||||||||||||||||||||.!!|||||| !!|||!!!||| euMetSerSerThrMetSerTyrPheThrLeuMetArgGluArgSer 1690039 : TAATGAGTTCCACAATGTCGTATTTCACGCTCATGAGAGAGAGATCG : 1690085 vulgar: gi|815909022|ref|XP_012240158.1| 22 380 . KQ414915.1 1685883 1690085 + 1057 M 21 63 5 0 2 I 0 1427 3 0 2 M 84 252 S 0 1 5 0 2 I 0 420 3 0 2 S 1 2 M 34 102 5 0 2 I 0 175 3 0 2 M 105 315 5 0 2 I 0 812 3 0 2 M 92 276 5 0 2 I 0 274 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1685884 1690085 1057 + . gene_id 1 ; sequence gi|815909022|ref|XP_012240158.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1685884 1685946 . + . KQ414915.1 exonerate:protein2genome:local exon 1685884 1685946 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1685947 1685948 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1685947 1687377 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1687376 1687377 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1687378 1687630 . + . KQ414915.1 exonerate:protein2genome:local exon 1687378 1687630 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1687631 1687632 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1687631 1688054 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1688053 1688054 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1688055 1688158 . + . KQ414915.1 exonerate:protein2genome:local exon 1688055 1688158 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688159 1688160 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688159 1688337 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1688336 1688337 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1688338 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688338 1688652 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 5 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690022 . + . intron_id 5 KQ414915.1 exonerate:protein2genome:local splice3 1690021 1690022 . + . intron_id 4 ; splice_site "AC" KQ414915.1 exonerate:protein2genome:local cds 1690023 1690085 . + . KQ414915.1 exonerate:protein2genome:local exon 1690023 1690085 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1685884 1690085 1057 + . alignment_id 1 ; Query gi|815909022|ref|XP_012240158.1| ; Align 1685884 23 63 ; Align 1687378 44 252 ; Align 1688057 129 102 ; Align 1688338 163 315 ; Align 1689469 268 276 ; Align 1690023 360 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909022|ref|XP_012240158.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor Or2-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 339 Query range: 45 -> 209 Target range: 1710869 -> 1712026 46 : IlePheLeuAlaSerAsnThrLeuAsnIleIleLeuAlaMetPheLysLeuSerVa : 64 :!:||| ! !!!!!.! !|||::::!:|||:!! !! .!!|||:!!! !:! LeuPheAspIleCysThrLeuLeuSerValIleMetProAlaIleLysIleIleIl 1710870 : CTGTTCGACATATGCACTCTTCTGTCGGTGATAATGCCCGCTATCAAAATAATCAT : 1710924 65 : lLeuHisPheTyrLysThrGluPheSerAspIleIleValTyrAlaGlnLysHisP : 83 !||| !.!! !!||| !||||||! ! !:!:|||||||||.!!:!!::!!!.| eLeuPheIleAsnLysGluGluPhePheArgLeuIleValTyrThrGluArgGlnP 1710925 : CCTGTTTATCAACAAGGAGGAGTTTTTCCGTTTGATCGTGTACACAGAGCGACAAT : 1710981 84 : heTrpHisIleAspTyrAsnAspAspGluLysIleLeuPheAlaGluCysArgAsn : 101 || !:!! |||||||||!!:||||||!:!! :!! ! !!!:|||!:!..! heMetAsnGlyAspTyrAsnGluAspGluArgLysIleValPheAspCysLysArg 1710982 : TCATGAACGGGGATTACAACGAGGACGAGAGGAAGATTGTGTTCGATTGTAAACGC : 1711035 102 : PheCysLysLeuTrpThrValPheIleLeuLeuValThrGluSerSerLeuSerPh : 120 .!.|||! !!!!!::||| !|||:!!! !! !|||||| !|||!!!:!! !! LeuCysThrPhePheThrCysPheLeuSerSerValThrLeuSerCysValLeuSe 1711036 : CTGTGTACATTCTTCACTTGTTTCCTCTCATCTGTGACTTTATCGTGCGTTCTCTC : 1711092 121 : eTyrAlaIleValProIleSer{A} >>>> Target Intron 1 >>>> {l : 128 !|||!.!:!!..!||||||! !{ } 119 bp { rTyrValValThrProIleTyr{M}++ ++{e 1711093 : TTACGTCGTCACTCCAATTTAC{A}gt.........................ag{T : 1711236 129 : a}AsnIleGlyAsnAsnGlySerGluArgLeuLeuProPheLysMetTrpValAsn : 146 !}|||||||||!..|||! !|||!!:|||:!!||||||||||||||||||:!!:!! t}AsnIleGlyArgAsnGluSerAspArgIleLeuProPheLysMetTrpIleAsp 1711237 : G}AATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTGGATTGAT : 1711289 147 : LeuProLeuThrValThrProTyrTyrGluIleMetPheAlaIleGlu >>>> T : 163 :!!||| !:!!:!!|||||||||:::||||||...|||...:!!:!! IleProThrSerMetThrProTyrPheGluIlePhePheThrLeuGln++ 1711290 : ATACCGACATCGATGACACcgtattttgaaatattcttcaccTTACAGgt...... : 1711342 164 : arget Intron 2 >>>> LeuLeuAlaValGlnGlnIleGlyAlaSerTyrLe : 174 546 bp :!!|||:!!!.! ! |||||||||!.!|||||| ++ValLeuSerAlaTyrGlnIleGlyValSerTyrGl 1711343 : ...................agGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGG : 1711919 175 : uCysProGluGlnPheLeuCysValLeuAsnLeuHisValValTyrGlnPheArgM : 193 !||| !!!:.!. !!||||||:!!:!!|||||||||:!!!.! !|||||||||! yCysPheAspAsnValLeuCysIleMetAsnLeuHisLeuAlaThrGlnPheArgI 1711920 : TTGCTTCGACAACGTTCTATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAA : 1711976 194 : etLeuGlnLysThrLeuLeuAsnLeuTrpSerAsnIleAspGluGlnThr : 209 !:|||||| ! ! !|||:!!|||:!! .!! ! ..!:!!|||||| leLeuGlnHisArgLeuValAsnIleAsnGlyLeuLysSerLysGlnThr 1711977 : TACTGCAACATAGACTGGTGAATATAAACGGTCTGAAGAGCAAACAGACA : 1712026 vulgar: gi|815909022|ref|XP_012240158.1| 45 209 . KQ414915.1 1710869 1712026 + 339 M 82 246 S 0 1 5 0 2 I 0 115 3 0 2 S 1 2 M 34 102 5 0 2 I 0 542 3 0 2 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1710870 1712026 339 + . gene_id 2 ; sequence gi|815909022|ref|XP_012240158.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1710870 1711116 . + . KQ414915.1 exonerate:protein2genome:local exon 1710870 1711116 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711117 1711118 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711117 1711235 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711234 1711235 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711236 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711236 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712026 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712026 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1710870 1712026 339 + . alignment_id 2 ; Query gi|815909022|ref|XP_012240158.1| ; Align 1710870 46 246 ; Align 1711238 129 102 ; Align 1711886 163 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909022|ref|XP_012240158.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor Or2-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 265 Query range: 125 -> 280 Target range: 1706992 -> 1707745 126 : IleSerAlaAsnIleGlyAsnAsnGlySerGluArgLeuLeuProPheLysMetTr : 144 .!!|||! !!::||||||...||| |||:!:|||:!!||| ! !!!!..!.|| PheSerGluSerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTr 1706993 : TTTTCAGAAAgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTG : 1707047 145 : pValAsnLeuProLeuThrValThrProTyrTyrGluIleMetPheAlaIleGlu : 163 |:!!:!!!!!||| !|||:!!||||||||||||||||||:!:|||.!! :!! pIleAspPheProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln+ 1707048 : GATTGACTTTCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGg : 1707104 164 : >>>> Target Intron 1 >>>> LeuLeuAlaValGlnGlnIleGlyAlaS : 172 276 bp :!!!!! !|||..! ! :!! !! !| + ++ValPheIleValMetTyrValCysIleS 1707105 : t.........................agGTTTTTATCGTAATGTACGTTTGCATAA : 1707407 173 : erTyrLeuCysProGluGlnPheLeuCysValLeuAsnLeuHisValValTyrGln : 190 ||||||||||| !!!:.!.|||||||||:!!:!!|||||||||..!!.! !||| erTyrLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGln 1707408 : GCTACCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAA : 1707461 191 : PheArgMetLeuGlnLysThrLeuLeuAsnLeuTrpSerAsnIleAspGluGlnTh : 209 ||||||!!:|||||| ! ! !|||! !|||:!!!! .!! ! !!!:...... PheArgIleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAs 1707462 : TTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcga : 1707518 210 : rAspIleAla<-><-><-><->AspTyrSerAsnLysTyrTyrIleIleLeuLysL : 224 |||::: ..! !!|||:!!:!!! !||| !! !!!|||! pLysIleSerLysLysThrProSerAsnSerAspGluCysTyrAlaLysPheLysA 1707519 : taaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAA : 1707575 225 : ysCysIleArgLysHisGlnTrpLeuIleGlnLeuAsnAlaGlnLeuGluUnkVal : 242 !.||||||!:!:!!|||||| ||||||:!!! ! ! !:!!|||:!! ||| snCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluVal 1707576 : ATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGGTG : 1707629 243 : PheThrLeuProIleLeuSerHisMetValIlePheSerValLeuMetCysPheAs : 261 ||| !||| !:!:|||:!!!!.:!!:!!:!!||||||:!!|||||||||.!!|| PheGlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAs 1707630 : TTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGA : 1707686 262 : pThrTyrGluIleValLeuAlaAsnIleSerSerGluLysArgLeuIlePhePheP : 280 | !||| !:!::!!:!!::!!.. !! !!.! :!!||| |||...|||| pGlyTyrLeuValMetValSerArgTyrTyrLysIleGlnArgAspIleIlePheP 1707687 : TGGATATTTGGTGATGGTTAGTAGGTATTACAAAATTCAACGCgatatcatatttt : 1707743 281 : he : 280 || he 1707744 : tc : 1707745 vulgar: gi|815909022|ref|XP_012240158.1| 125 280 . KQ414915.1 1706992 1707745 + 265 M 37 111 5 0 2 I 0 272 3 0 2 M 50 150 G 0 12 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1706993 1707745 265 + . gene_id 3 ; sequence gi|815909022|ref|XP_012240158.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1706993 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1706993 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707745 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707745 . + . insertions 12 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1706993 1707745 265 + . alignment_id 3 ; Query gi|815909022|ref|XP_012240158.1| ; Align 1706993 126 111 ; Align 1707380 163 150 ; Align 1707542 213 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909022|ref|XP_012240158.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor Or2-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 263 Query range: 269 -> 379 Target range: 1702965 -> 1703653 270 : IleSerSerGluLysArgLeuIlePhePhePheHisMetIleGlySerPheAlaHi : 288 :!:!!! !!! !!:!||||||! !||| ! ||||||!!::!!||||||.!...!!! ValThrProAlaArgArgLeuThrPheValPheHisIleValGlySerLeuCysGl 1702966 : GTGACTCCAGCGAGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCA : 1703020 289 : sIleIlePhePheThrTyrIleCysHisGlyLeuValGluGluSerThrAsnIleS : 307 .:!!:!:.!.|||||||||! !||| !!||||||:!!||||||||||||||||||. nLeuLeuLeuPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleG 1703021 : ACTATTGCTATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCG : 1703077 308 : erIleAlaSerTyrSerGlyTrpTrpValCysLeuProMetSerLysThrGlyLys : 325 !!! !|||! !||| !||| |||:!! !|||||||||..!|||.!!|||!:! lyThrAlaIleTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArg 1703078 : GGACTGCGATATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGA : 1703131 326 : LysIleArgLysAspMetLysMetMetMetMetLysAlaMetArgProCysGlnLe : 344 !:!:!:|||!:!|||:!!! !|||:!:!!::!:!:!:!!! !:! !! !! || ArgLeuArgArgAspLeuThrMetValIleValArgSerArgLysSerSerCysLe 1703132 : AGGTTGAGAAGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTT : 1703188 345 : uThrAlaGlyGlyPhePheProValAsnLeuGluThrSerThrAlaIlePheSerL : 363 |||||||.!!|||||||||||||||:::|||||||||!!!|||.!!:!!|||!:!! uThrAlaSerGlyPhePheProValSerLeuGluThrCysThrThrValPheAsnP 1703189 : AACTGCCAGCGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATT : 1703245 364 : euGln >>>> Target Intron 1 >>>> LeuIleSerSerThrMetSerT : 372 !!..! 358 bp :!!:!!|||!!!.!!||||||| heSer-+ ++ValLeuSerThrAlaMetSerT 1703246 : TCTCAtt.........................agGTGCTCAGTACAGCGATGTCAT : 1703630 373 : yrPheAlaLeuMetGlyGluSer : 379 |||||.!!|||:!: !!.!.||| yrPheThrLeuLeuArgHisSer 1703631 : ACTTCACTTTATTAAGGCACTCT : 1703653 vulgar: gi|815909022|ref|XP_012240158.1| 269 379 . KQ414915.1 1702965 1703653 + 263 M 95 285 5 0 2 I 0 354 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702966 1703653 263 + . gene_id 4 ; sequence gi|815909022|ref|XP_012240158.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702966 1703250 . + . KQ414915.1 exonerate:protein2genome:local exon 1702966 1703250 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1703251 1703252 . + . intron_id 1 ; splice_site "TT" KQ414915.1 exonerate:protein2genome:local intron 1703251 1703608 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1703607 1703608 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1703609 1703653 . + . KQ414915.1 exonerate:protein2genome:local exon 1703609 1703653 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702966 1703653 263 + . alignment_id 4 ; Query gi|815909022|ref|XP_012240158.1| ; Align 1702966 270 285 ; Align 1703609 365 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909022|ref|XP_012240158.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor Or2-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 194 Query range: 127 -> 210 Target range: 1694352 -> 1695010 128 : AlaAsnIleGlyAsnAsnGlySerGluArgLeuLeuProPheLysMetTrpValAs : 146 ||||||:!!|||!!.||| !|||||||||:!!|||||||||!!.|||||||||:! AlaAsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTrpValAs 1694353 : GCAAATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTGGGTTGA : 1694407 147 : nLeuProLeuThrValThrProTyrTyrGluIleMetPheAlaIleGluLeu{L} : 164 !!!!||| ! !:!!:!!||||||||||||:!!:!:||| !|||:!!:!!{:} pPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGlnVal{I}+ 1694408 : CTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGGTA{A}g : 1694462 165 : >>>> Target Intron 1 >>>> {eu}AlaValGlnGlnIleGlyAlaSer : 172 409 bp {!!}..!||| ! !!.:!!||| !!!! - +-{le}CysValTyrHisValGlyIleCys 1694463 : c.........................ac{TT}TGCGTGTACCATGTCGGTATATGT : 1694894 173 : TyrLeuCysProGluGlnPheLeuCysValLeuAsnLeuHisValValTyrGlnPh : 191 |||:!!||| !!!:.!..!!||| !!:!!|||||||||||||||!.! !||||| TyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGlnPh 1694895 : TACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAATT : 1694951 192 : eArgMetLeuGlnLysThrLeuLeuAsnLeuTrpSerAsnIleAspGluGlnThrA : 210 ||||!!:|||||| ! !!!!:!!|||||| ! !:! |||!!::!!||||||| eArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLysGlnThrA 1694952 : TCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAACAG : 1695008 211 : sp : 210 || sp 1695009 : AC : 1695010 vulgar: gi|815909022|ref|XP_012240158.1| 127 210 . KQ414915.1 1694352 1695010 + 194 M 36 108 S 0 1 5 0 2 I 0 405 3 0 2 S 1 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694353 1695010 194 + . gene_id 5 ; sequence gi|815909022|ref|XP_012240158.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694353 1694461 . + . KQ414915.1 exonerate:protein2genome:local exon 1694353 1694461 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694462 1694463 . + . intron_id 1 ; splice_site "GC" KQ414915.1 exonerate:protein2genome:local intron 1694462 1694870 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694869 1694870 . + . intron_id 0 ; splice_site "AC" KQ414915.1 exonerate:protein2genome:local cds 1694871 1695010 . + . KQ414915.1 exonerate:protein2genome:local exon 1694871 1695010 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694353 1695010 194 + . alignment_id 5 ; Query gi|815909022|ref|XP_012240158.1| ; Align 1694353 128 108 ; Align 1694873 165 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909022|ref|XP_012240158.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor Or2-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 44 -> 129 Target range: 1694003 -> 1694258 45 : CysIlePheLeuAlaSerAsnThrLeuAsnIleIleLeuAlaMetPheLysLeuSe : 63 ||||||!:!:!!!.!!!!|||! !||| !!:!! :!!!.!.!.||||||:!! CysIleTyrValGlyCysAsnIleLeuTyrLeuAlaIleValPhePheLysIleLe 1694004 : TGCATTTACGTCGGGTGCAACATTTTATACCTAGCGATCGTTTTCTTCAAGATCCT : 1694058 64 : rValLeuHisPheTyrLysThrGluPheSerAspIleIleValTyrAlaGlnLysH : 82 !||||||:!! :!!!:!! !||||||! !! :!!||| !!:!.!!|||:!! uValLeuTyrLysHisArgIleGluPheTyrGlyLeuIleArgPheThrGlnGluL 1694059 : CGTTTTGTACAAGCACAGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAGAGA : 1694115 83 : isPheTrpHisIleAspTyrAsnAspAspGluLysIleLeuPheAlaGluCysArg : 100 ! |||||||||.!!|||||||||... ||||||:!!:!!!!.:!!||||||!:! ysPheTrpHisPheAspTyrAsnSerArgGluLysLeuIleLeuSerGluCysLys 1694116 : AATTCTGGCATTTCGACTATAATTCACGGGAGAAGTTAATTTTATCCGAGTGCAAG : 1694169 101 : AsnPheCysLysLeuTrpThrValPheIleLeuLeuValThrGluSerSerLeuSe : 119 !!..!.|||! :!!!::! !||| !.!! !!!! !|||:!!.!!!!!! !:! LysIleCysThrValPheIleValAlaPheSerPheCysThrGlnGlyThrCysAl 1694170 : AAGATATGTACCGTTTTCATCGTTGCCTTCAGCTTCTGTACTCAGGGCACGTGTGC : 1694226 120 : rPheTyrAlaIleValProIleSerAlaAsn : 129 ! !|||!.!:!:..!||||||! !...||| aGlyTyrValValThrProIleLeuGlyAsn 1694227 : TGGTTACGTAGTGACACCTATTTTAggtaat : 1694258 vulgar: gi|815909022|ref|XP_012240158.1| 44 129 . KQ414915.1 1694003 1694258 + 177 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694004 1694258 177 + . gene_id 6 ; sequence gi|815909022|ref|XP_012240158.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1694004 1694258 . + . KQ414915.1 exonerate:protein2genome:local exon 1694004 1694258 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694004 1694258 177 + . alignment_id 6 ; Query gi|815909022|ref|XP_012240158.1| ; Align 1694004 45 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909022|ref|XP_012240158.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor Or2-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 161 -> 210 Target range: 1699632 -> 1699779 162 : GluLeuLeuAlaValGlnGlnIleGlyAlaSerTyrLeuCysProGluGlnPheLe : 180 :!!:!!|||:!!:!! ! !!.:!!|||!.!!!!|||:!!||| !!!:.!..!!|| GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1699633 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1699687 181 : uCysValLeuAsnLeuHisValValTyrGlnPheArgMetLeuGlnLysThrLeuL : 199 ||||:!!:!!|||||||||!.!!.! !|||||||||!!:|||||| ! ! !|||! uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1699688 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1699744 200 : euAsnLeuTrpSerAsnIleAspGluGlnThrAsp : 210 !|||||| ! ..!!..! ! :!!|||..!||| erAsnLeuGlyAspThrAsnArgLysGlnValAsp 1699745 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGAT : 1699779 vulgar: gi|815909022|ref|XP_012240158.1| 161 210 . KQ414915.1 1699632 1699779 + 104 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699633 1699779 104 + . gene_id 7 ; sequence gi|815909022|ref|XP_012240158.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1699633 1699779 . + . KQ414915.1 exonerate:protein2genome:local exon 1699633 1699779 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699633 1699779 104 + . alignment_id 7 ; Query gi|815909022|ref|XP_012240158.1| ; Align 1699633 162 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909022|ref|XP_012240158.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor Or2-like [Bombus impatiens] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 161 -> 210 Target range: 1702013 -> 1702160 162 : GluLeuLeuAlaValGlnGlnIleGlyAlaSerTyrLeuCysProGluGlnPheLe : 180 :!!:!!|||:!!:!! ! !!.:!!|||!.!!!!|||:!!||| !!!:.!..!!|| GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 181 : uCysValLeuAsnLeuHisValValTyrGlnPheArgMetLeuGlnLysThrLeuL : 199 ||||:!!:!!|||||||||!.!!.! !|||||||||!!:|||||| ! ! !|||! uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 200 : euAsnLeuTrpSerAsnIleAspGluGlnThrAsp : 210 !|||||| ! ..!!..! ! :!!|||..!||| erAsnLeuGlyAspThrAsnArgLysGlnValAsp 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGAT : 1702160 vulgar: gi|815909022|ref|XP_012240158.1| 161 210 . KQ414915.1 1702013 1702160 + 104 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1702160 104 + . gene_id 8 ; sequence gi|815909022|ref|XP_012240158.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702014 1702160 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702160 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1702160 104 + . alignment_id 8 ; Query gi|815909022|ref|XP_012240158.1| ; Align 1702014 162 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 95 -> 185 Target range: 1635 -> 1902 96 : LeuIleAlaLeuValIlePheLeuSerLeuProLeuTyrAsnProValLeuAspIleIleIl : 116 :!!:!!..!:!!:!!:!:|||:!!||| !|||:!! ! !:!!|||||||||:!!:! IleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLe 1636 : ATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACT : 1696 117 : eProLeuAsnGluThrArgGlnArgAsnAsnValPheGlnValHisTyrGlyValLeuAspA : 137 !||| !||||||:!!|||.!. ! !!:!!!:!! !!.!:!!||| !..! !!!:: uProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluH 1697 : ACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGC : 1759 138 : snGluGluHisPheTyrIleValTyrValHisLeuSerLeuCysAlaIleIleIleValVal : 157 !!:!! ! !! ! ||||||:!! ..!|||:!!:!!! ! !:!::!::!: !! ! isLysTyrAspValTyrIleIle---ThrHisMetAlaSerValIleLeuValValPheTyr 1760 : ATAAGTACGACGTGTACATAATT---ACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTAC : 1816 158 : ThrIleIleSerValAspSerLeuTyrIleThrIleIleTyrHisAlaCysGlyLeuPheAl : 178 ..! !.!!:!! !|||!!! !|||||| !:!!:!: ! |||!.!|||||||||!!.|| ValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAl 1817 : GTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGC : 1879 179 : aValCysGlySerGlnIleGln : 185 ||||! !||| :::|||::: aValSerGly***LysIleArg 1880 : CGTGTCCGGgtaaaaaattcga : 1902 vulgar: gi|815897156|ref|XP_012249339.1| 95 185 . KQ414921.1 1635 1902 + 135 M 49 147 G 1 0 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1636 1902 135 + . gene_id 1 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1636 1902 . + . KQ414921.1 exonerate:protein2genome:local exon 1636 1902 . + . insertions 0 ; deletions 1 KQ414921.1 exonerate:protein2genome:local similarity 1636 1902 135 + . alignment_id 1 ; Query gi|815897156|ref|XP_012249339.1| ; Align 1636 96 147 ; Align 1783 146 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815902073|ref|XP_003486905.2| PREDICTED: odorant receptor 49b-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 446 Query range: 302 -> 438 Target range: 117465 -> 118062 303 : LeuLeuLysLeuCysGluAspIleGluAsnLeuThrAsnIleMetPheLeuIleGlnL : 322 :!!!!!!:!!!!|||:!!|||||||||..!:!!||||||:!:||||||!!!! |||| IlePheArgPheCysGlnAspIleGluArgValThrAsnValMetPhePheThrGlnL 117466 : ATTTTCAGGTTTTGCCAGGACATCGAACGTGTTACGAACGTGATGTTTTTCACGCAGC : 117523 323 : euIleThrSerThrTyrAsnIleSerLeuIleGlyPheLysIleValGlu >>>> T : 339 ||.!! !|||||||||||||||||||||:!:|||||||||:!::!!! ! euPheGlySerThrTyrAsnIleSerLeuValGlyPheLysLeuIleGly++ 117524 : TGTTCGGTAGCACGTACAACATATCTTTAGTGGGCTTCAAGTTGATCGGGgt...... : 117576 340 : arget Intron 1 >>>> AspAsnProGlyLysValLysPheValThrGlnLeuG : 351 56 bp |||:!!|||! !||| !|||!:!:!!!:!||||||. ++AspAspProAspLysTyrLysTyrIleSerGlnLeuS 117577 : ...................agGACGATCCTGATAAATACAAGTACATCAGCCAACTCT : 117666 352 : lyIlePheIleIleGlnLeuPheLeuCysAsnTrpProProAspLeuLeuArgSerLy : 370 .!||| !|||||||||||||||||||||||||||||| !!|||!!!||| !||||| erIleAlaIleIleGlnLeuPheLeuCysAsnTrpProAlaAspPheLeuTyrSerLy 117667 : CGATAGCCATCATCCAGCTTTTCCTCTGCAATTGGCCCGCAGATTTCCTCTACTCGAA : 117723 371 : s >>>> Target Intron 2 >>>> SerGluAlaIleGlyHisAlaGlyTyrS : 380 | 63 bp |||||||||||||||!.!|||!.!|||! s++ ++SerGluAlaIleGlyArgAlaAlaTyrT 117724 : Ggt.........................agAGCGAAGCGATCGGTCGTGCAGCCTATA : 117816 381 : erMetProTrpTyrArgTyrProCysAsnLeuArgAsnProValAsnMetLeuLeuIl : 399 !!:!!||||||:!! !!|||||| !! !||||||!!.|||..!|||||||||:!!|| hrValProTrpHisTrpTyrProArgCysLeuArgLysProThrAsnMetLeuMetIl 117817 : CGGTGCCTTGGCATTGGTACCCTCGTTGCTTGCGAAAACCAACCAACATGCTGATGAT : 117873 400 : eArgGlyGlnLysProValArgLeuThrAlaGlyLysPheIleGluLeuSerLeuGly : 418 |||||||||||||||||||||||||||||||||||||.!!:!!! !|||||||||! ! eArgGlyGlnLysProValArgLeuThrAlaGlyLysIleValGlyLeuSerLeuGlu 117874 : CAGAGGTCAGAAACCGGTTCGTCTGACCGCCGGAAAAATCGTCGGACTCTCTCTGGAA : 117930 419 : ThrPheAlaSer >>>> Target Intron 3 >>>> MetIleSerAlaAlaAl : 428 |||||||||||| 70 bp |||||||||:!!|||!. ThrPheAlaSer++ ++MetIleSerSerAlaVa 117931 : ACGTTTGCCTCTgt.........................agATGATATCGTCGGCCGT : 118030 429 : aSerPhePheThrMetIleArgSerMetAsn : 438 !||||||||||||:!::!!|||!!!|||||| lSerPhePheThrValValArgThrMetAsn 118031 : GTCCTTCTTCACCGTCGTTCGAACCATGAAT : 118062 vulgar: gi|815902073|ref|XP_003486905.2| 302 438 . KQ414940.1 117465 118062 + 446 M 36 108 5 0 2 I 0 52 3 0 2 M 32 96 5 0 2 I 0 59 3 0 2 M 52 156 5 0 2 I 0 66 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 117466 118062 446 + . gene_id 1 ; sequence gi|815902073|ref|XP_003486905.2| ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 117466 117573 . + . KQ414940.1 exonerate:protein2genome:local exon 117466 117573 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 117574 117575 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 117574 117629 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 117628 117629 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 117630 117725 . + . KQ414940.1 exonerate:protein2genome:local exon 117630 117725 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 117726 117727 . + . intron_id 2 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 117726 117788 . + . intron_id 2 KQ414940.1 exonerate:protein2genome:local splice3 117787 117788 . + . intron_id 1 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 117789 117944 . + . KQ414940.1 exonerate:protein2genome:local exon 117789 117944 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 117945 117946 . + . intron_id 3 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 117945 118014 . + . intron_id 3 KQ414940.1 exonerate:protein2genome:local splice3 118013 118014 . + . intron_id 2 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 118015 118062 . + . KQ414940.1 exonerate:protein2genome:local exon 118015 118062 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 117466 118062 446 + . alignment_id 1 ; Query gi|815902073|ref|XP_003486905.2| ; Align 117466 303 108 ; Align 117630 339 96 ; Align 117789 371 156 ; Align 118015 423 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815902073|ref|XP_003486905.2| PREDICTED: odorant receptor 49b-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 357 Query range: 8 -> 146 Target range: 116665 -> 117085 9 : GluPheGluLysThrIleAspLeuAsnLeuAlaLeuLeuArgLeuAlaGlyValVal< : 28 ||||||!!:!:! !|||! !|||||||||! !||||||||||||..!||||||:!! GluPheAspArgLeuIleGlyLeuAsnLeuAspLeuLeuArgLeuCysGlyValIleP 116666 : GAATTCGATAGATTGATCGGCTTGAATCTGGATCTTCTGAGATTGTGCGGCGTGATAC : 116723 29 : -><->SerSerGluArgAlaSerArgAspThrLeuAlaSerLeuAlaPheValCysMe : 45 .!!|||! ! ! !.!!|||:!! !||||||!!!:!!||||||! !|||:! roCysGlySerGlyPheLeuGlyArgAsnGlyLeuAlaCysValAlaPheGlyCysLe 116724 : CGTGCGGTTCAGGATTTCTAGGTAGAAATGGTCTGGCGTGTGTAGCGTTCGGCTGTCT : 116780 46 : tThrIleAsnThrValSerTyrValTyrGluPheAlaThrSerSerTyrThrLeuAla : 64 !|||:!! !!!:!:!!||||||..!|||:!!|||!.!|||!!!! ! ! !.!|||! ! uThrValTyrSerIleSerTyrThrTyrGlnPheValThrCysMetGluAsnLeuAsp 116781 : GACCGTATACAGCATCTCGTACACGTATCAATTTGTCACGTGTATGGAGAACCTGGAC : 116837 65 : ThrValLeuGluSerPheAlaMetIleIleSerLeuValAlaGlyGlnThrArgLeuV : 84 |||:!!!!!|||||||||.!!||||||||||||:!!|||!.!||||||.!!|||!!! ThrIlePheGluSerPheThrMetIleIleSerIleValGlyGlyGlnAlaArgPheS 116838 : ACCATTTTCGAGTCGTTCACGATGATCATCTCGATCGTGGGCGGTCAGGCGCGGTTCT : 116897 85 : alIleLeuLeuTrpLeuArgAspSerCysGlnThrMetLeuAsnIleCysGluSerPh : 103 !||||||! !|||!!!|||! !!!!|||!:!|||||||||.!. !||||||! !.! erIleLeuSerTrpPheArgGlyThrCysArgThrMetLeuGluAlaCysGluPheLe 116898 : CGATCCTGTCGTGGTTCCGCGGTACCTGTCGAACGATGCTCGAAGCCTGCGAGTTCCT : 116954 104 : eTrpSerThrLeuAsnLeuArgGluLysLysIleValGlnSerTyrThrAsnLysAla : 122 !||||||||||||!!.! !|||||||||:!!||||||!:!||||||.!!||||||.!! uTrpSerThrLeuLysProArgGluLysGluIleValArgSerTyrAlaAsnLysThr 116955 : CTGGTCGACTCTGAAACCGCGGGAGAAGGAGATCGTTCGAAGTTACGCGAACAAAACG : 117011 123 : LysLeuLeuSerArgCysTyrLeuPheSerCysValSerThrIlePhePheTyrValL : 142 !:!||||||!!!|||||||||||| !|||||||||! !|||||||||.!!|||! !: ArgLeuLeuThrArgCysTyrLeuAlaSerCysValPheThrIlePheIleTyrGlyV 117012 : AGATTGCTGACCCGCTGCTACTTGGCCAGCTGCGTCTTCACCATCTTCATTTACGGCG : 117071 143 : euLeuIleGlnPhe : 146 !!!!! !! ||| alPheAlaLeuPhe 117072 : TGTTCGCTCTCTTC : 117085 vulgar: gi|815902073|ref|XP_003486905.2| 8 146 . KQ414940.1 116665 117085 + 357 M 19 57 G 0 6 M 119 357 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 116666 117085 357 + . gene_id 2 ; sequence gi|815902073|ref|XP_003486905.2| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 116666 117085 . + . KQ414940.1 exonerate:protein2genome:local exon 116666 117085 . + . insertions 6 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 116666 117085 357 + . alignment_id 2 ; Query gi|815902073|ref|XP_003486905.2| ; Align 116666 9 57 ; Align 116729 28 357 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815902073|ref|XP_003486905.2| PREDICTED: odorant receptor 49b-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 246 Query range: 179 -> 256 Target range: 117127 -> 117358 180 : AlaThrAspAspLysArgArgArgLeuProTyrAlaPhePheIleAspValGlnGluT : 199 .!!..!|||..!! ! !|||||||||||||||!.!||||||:!!!!:||||||:!!| ThrValAspSerThrValArgArgLeuProTyrValPhePheLeuGluValGlnGlnT 117128 : ACGGTCGACAGTACGGTTAGACGTTTGCCGTACGTGTTCTTTCTTGAGGTGCAACAAA : 117185 200 : hrProTrpTyrGluIleValTyrValValGlnLeuGlySerMetIleSerValGlyLe : 218 |||||||||||||||||..!! !!.!:!!|||||| !:!!|||:!:!:!||||||:! hrProTrpTyrGluIleThrCysAlaLeuGlnLeuPheAlaMetLeuAsnValGlyIl 117186 : CGCCGTGGTACGAGATCACTTGCGCCCTTCAGCTGTTCGCGATGTTGAACGTCGGCAT : 117242 219 : uThrCysValGlyValAspThrThrGlyProLeuLeuIleLeuIleAlaCysGlyTyr : 237 !|||||||||||||||||||||! !|||||||||!!!:!!|||:!!.!!|||!.!:!! eThrCysValGlyValAspThrIleGlyProLeuPheValLeuLeuThrCysAlaHis 117243 : CACCTGTGTCGGAGTAGACACGATCGGTCCTCTCTTCGTCCTGCTCACTTGTGCTCAT : 117299 238 : PheAspThrValArgSerArgIleGluAsnThrTyrSerPheGluSerProSerSer : 256 ||||||..!:!!|||||||||||||||!:! !:!!:!!.!!!!: !! !!|||||| PheAspValIleArgSerArgIleGluSerLeuHisAlaIleAspArgSerSerSer 117300 : TTCGACGTGATTCGATCTCGAATCGAGAGTTTACACGCGATCGATCGTTCTTCGAGC : 117358 vulgar: gi|815902073|ref|XP_003486905.2| 179 256 . KQ414940.1 117127 117358 + 246 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 117128 117358 246 + . gene_id 3 ; sequence gi|815902073|ref|XP_003486905.2| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 117128 117358 . + . KQ414940.1 exonerate:protein2genome:local exon 117128 117358 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 117128 117358 246 + . alignment_id 3 ; Query gi|815902073|ref|XP_003486905.2| ; Align 117128 180 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815902073|ref|XP_003486905.2| PREDICTED: odorant receptor 49b-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 336 -> 437 Target range: 807284 -> 807587 337 : ValGluAspAsnProGlyLysValLysPheValThrGlnLeuGlyIlePheIleIleG : 356 ..!:!!|||||| !!.! !:!!!:! ! !!..!! !:!!! !! !!!.:!:|||| ThrLysAspAsnValAlaAlaLeuArgSerPheValLeuMetValThrLeuLeuIleG 807285 : ACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGATTC : 807342 357 : lnLeuPheLeuCysAsnTrpProProAspLeuLeuArgSerLysSerGluAlaIleGl : 375 |||||!:!|||! ! !!:: !! !:!! !|||..!|||::!!!!|||! !|||!. lnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluIleAl 807343 : AGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGC : 807399 376 : yHisAlaGlyTyrSerMetProTrpTyrArgTyrProCysAsnLeuArgAsnProVal : 394 !!!.|||!.!|||..! ! !|||||||||! !! ! ! :!! ! !!.. !:!! aGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAspLeu 807400 : ACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTC : 807456 395 : AsnMetLeuLeuIleArgGlyGlnLysProValArgLeuThrAlaGlyLysPheIleG : 414 !:!!:!!:!! !||||||.!...!||| !|||:!!|||||||||||||||:!! LeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheValP 807457 : CTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCC : 807516 415 : luLeuSerLeuGlyThrPheAlaSerMetIleSerAlaAlaAlaSerPhePheThrMe : 433 !:!!!:!||| !|||||| !..!!!::!:!.!|||:!!!.!|||!:!.!.:!!:! roMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSerVa 807517 : CGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGT : 807573 434 : tIleArgSerMet : 437 :!!:!:! !||| lMetLysValMet 807574 : AATGAAGGTAATG : 807587 vulgar: gi|815902073|ref|XP_003486905.2| 336 437 . KQ414940.1 807284 807587 + 153 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807285 807587 153 + . gene_id 4 ; sequence gi|815902073|ref|XP_003486905.2| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807285 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807285 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807285 807587 153 + . alignment_id 4 ; Query gi|815902073|ref|XP_003486905.2| ; Align 807285 337 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909018|ref|XP_012240156.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 181 Query range: 206 -> 314 Target range: 807257 -> 807578 207 : GlyPheLeuIleIleValAlaIleAsnSerHisGlyAspValGlyIleValValLysI : 226 ||||||:!!.!!:!:||||||:!:!:!!!! ! ! !:!!|||!.! !:!! !!... GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 227 : leValLeuPheTyrIleAlaIleMetLeuGluAlaPheValPheSerTyrAlaGlyGl : 245 !!||||||.!. :!:.!!:!::!!:!!:!! !!:!:!!!:!:!!|||||||||.! heValLeuMet---ValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807316 : TCGTTCTGATG---GTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 246 : uTyrLeuSerSerLysSerLeuSerIleSerAlaSerAlaTyrGlySerSerTrpTyr : 264 . |||..!|||::!!!! !..!|||:!! !:!!||||||! !||| !|||||| nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 265 : LeuLeuGluProArgAsnArgArgValValIleLeuLeuMetIleArgSerGlnArgA : 284 ! !! !.!. !!.! !|||! !:!!:!!|||:!!!!: !|||.!!.!. !! ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 285 : rgLeuThrIleThrAlaGlyLysPheMetAspLeuSerMetPheGlyPheAlaSerIl : 303 !! ! !||||||||||||||||||:!: :!!!:!:!:||| !||| !..!|| roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 304 : eLeuLysAlaSerAlaSerTyrValSerValLeu : 314 |||||||||||||!.!||||||:!!||||||:!! eLeuLysAlaSerGlySerTyrLeuSerValMet 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATG : 807578 vulgar: gi|815909018|ref|XP_012240156.1| 206 314 . KQ414940.1 807257 807578 + 181 M 23 69 G 1 0 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807578 181 + . gene_id 1 ; sequence gi|815909018|ref|XP_012240156.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807578 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807258 807578 181 + . alignment_id 1 ; Query gi|815909018|ref|XP_012240156.1| ; Align 807258 207 69 ; Align 807327 231 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 95 -> 185 Target range: 211 -> 478 96 : LeuIleAlaLeuValIlePheLeuSerLeuProLeuTyrAsnProValLeuAspIleIleIleP : 117 :!!:!!..!:!!:!!:!:|||:!!||| !|||:!! ! !:!!|||||||||:!!:!!| IleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuP 212 : ATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTAC : 275 118 : roLeuAsnGluThrArgGlnArgAsnAsnValPheGlnValHisTyrGlyValLeuAspAsnGl : 138 || !||||||:!!|||.!. ! !!:!!!:!! !!.!:!!||| !..! !!!::!!:! roLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLy 276 : CGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAA : 338 139 : uGluHisPheTyrIleValTyrValHisLeuSerLeuCysAlaIleIleIleValValThrIle : 159 ! ! !! ! ||||||:!! ..!|||:!!:!!! ! !:!::!::!: !! !..! ! sTyrAspValTyrIleIle---ThrHisMetAlaSerValIleLeuValValPheTyrValTyr 339 : GTACGACGTGTACATAATT---ACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTAC : 398 160 : IleSerValAspSerLeuTyrIleThrIleIleTyrHisAlaCysGlyLeuPheAlaValCysG : 181 .!!:!! !|||!!! !|||||| !:!!:!: ! |||!.!|||||||||!!.||||||! !| PheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerG 399 : TTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCG : 464 182 : lySerGlnIleGln : 185 || :::|||::: ly***LysIleArg 465 : Ggtaaaaaattcga : 478 vulgar: gi|815897156|ref|XP_012249339.1| 95 185 . LHQN01023902.1 211 478 + 135 M 49 147 G 1 0 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 212 478 135 + . gene_id 1 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 212 478 . + . LHQN01023902.1 exonerate:protein2genome:local exon 212 478 . + . insertions 0 ; deletions 1 LHQN01023902.1 exonerate:protein2genome:local similarity 212 478 135 + . alignment_id 1 ; Query gi|815897156|ref|XP_012249339.1| ; Align 212 96 147 ; Align 359 146 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 94 -> 196 Target range: 4984 -> 5290 95 : LeuLeuIleAlaLeuValIlePheLeuSerLeuProLeuTyrAsnProValLeuAspIleIl : 115 :!!! !:!!..! !!.!:!!|||:!!!!!||||||!!! :::|||:!!|||||||||:! IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLe 4985 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCT : 5045 116 : eIleProLeuAsnGluThrArgGlnArgAsnAsnValPheGlnValHisTyrGlyValLeuA : 136 !!!:|||||||||||||||||| !||| !|||!:!! !!.!:!!||| !||| | uMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal---A 5046 : TATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC---G : 5105 137 : spAsnGluGluHisPheTyrIleValTyrValHisLeuSerLeuCysAlaIleIleIleVal : 156 ||.!.!!::!!:!! !|||:!::!! ! !|||:!!! !||| !.!:!!!!::!!:!! spGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIle 5106 : ACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATC : 5165 157 : ValThrIleIleSerValAspSerLeuTyrIleThrIleIleTyrHisAlaCysGlyLeuPh : 177 !..!.!! !:!! !|||:!! !|||:!: ! !:!: ! |||||||||||||||!! SerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLe 5166 : TCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTT : 5228 178 : eAlaValCysGlySerGlnIleGln<->LysThrAlaGluAsnAsnPheValGluLysAsn : 196 .|||:!!...|||! ! !:!!||| :!! ! !||||||..!|||:!! ! !:!||| uAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGluAsnGlyPheLeuTyrArgAsn 5229 : GGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAATGGTTTTCTTTATAGAAAT : 5290 vulgar: gi|815897156|ref|XP_012249339.1| 94 196 . LHQN01025741.1 4984 5290 + 175 M 40 120 G 1 0 M 50 150 G 0 3 M 11 33 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4985 5290 175 + . gene_id 1 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4985 5290 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4985 5290 . + . insertions 3 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 4985 5290 175 + . alignment_id 1 ; Query gi|815897156|ref|XP_012249339.1| ; Align 4985 95 120 ; Align 5105 136 150 ; Align 5258 186 33 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 95 -> 181 Target range: 1576 -> 1831 96 : LeuIleAlaLeuValIlePheLeuSerLeuProLeuTyrAsnProValLeuAspIleIleIl : 116 |||.!!..!! !||||||||| !|||:!! !!:!! !! !|||||||||:!!||| LeuPheCysTyrValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSe 1577 : CTGTTTTGCTACGTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTC : 1637 117 : eProLeuAsnGluThrArgGlnArgAsnAsnValPheGlnValHisTyrGlyValLeuAspA : 137 !||| !||||||:!!||| ! !:!! !:!!!:!! !.!:!!|||||| ||||||. rProLysAsnGluSerArgGlyValAspPheIleTyrProAlaTyrTyrGly---LeuAspG 1638 : ACCGAAAAACGAATCGCGTGGGGTTGACTTCATTTATCCTGCATACTACGGT---CTCGACG : 1697 138 : snGluGluHisPheTyrIleValTyrValHisLeuSerLeuCysAlaIleIleIleValVal : 157 !.|||||||||!:!||||||:!! ! !|||:!! !! ! !! !:!!:!: !! !! luGluGluHisTyrTyrIleLeuMetGlyHisMetLeuCysValIleThrValValPhePhe 1698 : AGGAGGAACATTATTACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTC : 1757 158 : ThrIleIleSerValAspSerLeuTyrIleThrIleIleTyrHisAlaCysGlyLeuPheAl : 178 ..! !|||||| !|||!!!:!!|||!!:!.!|||:!: ! |||||||||||||||.!. ValTyrIleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAs 1758 : GTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGCGGATTACTGAA : 1820 179 : aValCysGly : 181 !|||! !||| nValSerGly 1821 : CGTCTCTGGG : 1831 vulgar: gi|815897156|ref|XP_012249339.1| 95 181 . LHQN01025741.1 1576 1831 + 165 M 38 114 G 1 0 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1577 1831 165 + . gene_id 2 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1577 1831 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1577 1831 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 1577 1831 165 + . alignment_id 2 ; Query gi|815897156|ref|XP_012249339.1| ; Align 1577 96 114 ; Align 1691 135 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 131 -> 181 Target range: 11585 -> 11735 132 : TyrGlyValLeuAspAsnGluGluHisPheTyrIleValTyrValHisLeuSerLeuCys : 151 ||| ! !!:!!|||.!.! !|||:!!!:!||| !:!! :!!||| !!!!! ! TyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThr 11586 : TATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACA : 11643 152 : AlaIleIleIleValValThrIleIleSerValAspSerLeuTyrIleThrIleIleTyr : 171 !.!:!:|||:!!||||||..! ! !:!! !|||!!! !|||!!:..!:!::!: ! ValLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGln 11644 : GTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAA : 11703 172 : HisAlaCysGlyLeuPheAlaValCysGly : 181 |||.!!||||||||||||||||||..!||| HisThrCysGlyLeuPheAlaValAlaGly 11704 : CACACTTGCGGACTGTTCGCCGTGGCCGGG : 11735 vulgar: gi|815897156|ref|XP_012249339.1| 131 181 . LHQN01025741.1 11585 11735 + 109 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11586 11735 109 + . gene_id 3 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11586 11735 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11586 11735 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11586 11735 109 + . alignment_id 3 ; Query gi|815897156|ref|XP_012249339.1| ; Align 11586 132 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 131 -> 181 Target range: 1137 -> 987 132 : TyrGlyValLeuAspAsnGluGluHisPheTyrIleValTyrValHisLeuSerLeuCysAl : 152 ||| ! !!:!!|||.!.! !|||:!!!:!||| !:!! :!!||| !!!!! ! !. TyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrVa 1137 : TATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGT : 1077 153 : aIleIleIleValValThrIleIleSerValAspSerLeuTyrIleThrIleIleTyrHisA : 173 !:!:|||:!!||||||..! ! !:!! !|||!!! !|||!!:..!:!::!: ! |||. lLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisT 1076 : TTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACA : 1014 174 : laCysGlyLeuPheAlaValCysGly : 181 !!||||||||||||||||||..!||| hrCysGlyLeuPheAlaValAlaGly 1013 : CTTGCGGACTGTTCGCCGTGGCCGGG : 988 vulgar: gi|815897156|ref|XP_012249339.1| 131 181 . LHQN01027734.1 1137 987 - 109 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 988 1137 109 - . gene_id 1 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 988 1137 . - . LHQN01027734.1 exonerate:protein2genome:local exon 988 1137 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 988 1137 109 - . alignment_id 1 ; Query gi|815897156|ref|XP_012249339.1| ; Align 1138 132 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815911888|ref|XP_012241385.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 339 -> 393 Target range: 4381 -> 4219 340 : GlnGlySerGluIleAlaThrAlaLeuTyrAspIleGluTrpTyrAsnLeuProGlyArgLy : 360 ||| !!! !:!!:!!!.! !!.!:!!||| ! !!!:|||||| !!|||||| !|||!: GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 361 : sAlaArgAspIleValLeuValLeuAlaIleSerLysTyrProLeuLysLeuThrAlaGlyL : 381 ! !! !|||:!!:!!|||:!!:!!.!! !|||!!. !:!!:!!:!!|||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 382 : ysIleLeuValLeuSerMetAsnThrPheGlyValVal : 393 |||||... :::|||:!: !!|||||||||! !||| ysIlePheHisMetSerLeuTyrThrPheGlyAspVal 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATGTA : 4220 vulgar: gi|815911888|ref|XP_012241385.1| 339 393 . LHQN01027980.1 4381 4219 - 105 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4220 4381 105 - . gene_id 1 ; sequence gi|815911888|ref|XP_012241385.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4220 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4220 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4220 4381 105 - . alignment_id 1 ; Query gi|815911888|ref|XP_012241385.1| ; Align 4382 340 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815897156|ref|XP_012249339.1| PREDICTED: odorant receptor 9a-like isoform X1 [Bombus impatiens] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 173 Query range: 94 -> 196 Target range: 5678 -> 5372 95 : LeuLeuIleAlaLeuValIlePheLeuSerLeuProLeuTyrAsnProValLeuAspIleIl : 115 :!!! !:!!..! !!.!:!!|||:!!!!!||||||!!! :::|||:!!|||||||||:! IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLe 5678 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCT : 5618 116 : eIleProLeuAsnGluThrArgGlnArgAsnAsnValPheGlnValHisTyrGlyValLeuA : 136 !!!:|||||||||||||||||| !||| !|||!:!! !!.!:!!||| !||| | uMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal---A 5617 : TATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC---G : 5558 137 : spAsnGluGluHisPheTyrIleValTyrValHisLeuSerLeuCysAlaIleIleIleVal : 156 ||.!.!!::!!:!! !|||:!::!! ! !|||:!!! !||| !.!:!!!!::!!:!! spGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIle 5557 : ACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATC : 5498 157 : ValThrIleIleSerValAspSerLeuTyrIleThrIleIleTyrHisAlaCysGlyLeuPh : 177 !..!.!! !:!! !|||:!! !|||:!: ! !:!: ! |||||||||||||||!! SerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLe 5497 : TCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTT : 5435 178 : eAlaValCysGlySerGlnIleGln<->LysThrAlaGluAsnAsnPheValGluLysAsn : 196 .|||:!!...|||! ! !:!!||| :!! ! !||||||..!|||:!! ! !:!||| uAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGluAsnGlyPheLeuTyrArgAsn 5434 : GGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAATGGTTTTCTTTATAGAAAT : 5373 vulgar: gi|815897156|ref|XP_012249339.1| 94 196 . LHQN01028732.1 5678 5372 - 173 M 40 120 G 1 0 M 50 150 G 0 3 M 11 33 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5373 5678 173 - . gene_id 1 ; sequence gi|815897156|ref|XP_012249339.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5373 5678 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5373 5678 . - . insertions 3 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5373 5678 173 - . alignment_id 1 ; Query gi|815897156|ref|XP_012249339.1| ; Align 5679 95 120 ; Align 5559 136 150 ; Align 5406 186 33 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909105|ref|XP_012240198.1| PREDICTED: odorant receptor 4-like isoform X1 [Bombus impatiens] Target: LHQN01049708.1 Habropoda laboriosa contig49708, whole genome shotgun sequence Model: protein2genome:local Raw score: 317 Query range: 0 -> 85 Target range: 60 -> 315 1 : MetIleLeuAsnThrIleSerProSerValLysPheGlyLeuHisPheCysGlyValTrpProG : 22 !!::!!! !||||||!!:|||! !|||||||||||||||||||||||| !|||:!!||||||| IleLeuArgAsnThrMetSerGlnSerValLysPheGlyLeuHisPheValGlyIleTrpProG 61 : ATATTACGAAATACAATGAGCCAATCTGTTAAGTTTGGTCTACATTTTGTCGGTATTTGGCCAG : 124 23 : lyThrProPheHisPheLeuHisLysLeuCysTrpValIleAlaIleIleThrLeuGlnThrTy : 43 |||||||||||! !|||||||||:!! !!||||||||||||!!: !..!||||||||||| lyThrProPheProSerLeuHisLysIleGlyTrpValIleAlaMetAlaValLeuGlnThrTy 125 : GAACACCATTCCCAAGTTTACATAAAATTGGTTGGGTCATAGCGATGGCTGTACTTCAAACTTA : 187 44 : rGlnTyrLysTyrIleValIleHisTyrAsnThrAspThrLeuMetAsnIleAlaGluAsnLeu : 64 |||||||!:!||||||:!!! ||||||!!.:!!|||!:!|||||| !! ! !!!:|||||| rGlnTyrArgTyrIleIleThrHisTyrLysSerAspSerLeuMetValThrIleAspAsnLeu 188 : TCAGTACAGATACATCATTACGCATTATAAATCTGATAGTCTTATGGTCACAATAGATAATTTG : 250 65 : SerIleAlaValProPheSerLeuValLeuIleLysLeuPheValThrTrpThrAsnTyrGly : 85 ||||||.!!:!!||||||!!!||||||||||||||||||...:::||||||.!!||||||||| SerIleThrMetProPheThrLeuValLeuIleLysLeuIleIleThrTrpAlaAsnTyrGly 251 : AGCATCACCATGCCATTCACTCTagtgttaattaaattaattattacttgGGCAAATTATGGG : 315 vulgar: gi|815909105|ref|XP_012240198.1| 0 85 . LHQN01049708.1 60 315 + 317 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049708.1 exonerate:protein2genome:local gene 61 315 317 + . gene_id 1 ; sequence gi|815909105|ref|XP_012240198.1| ; gene_orientation . LHQN01049708.1 exonerate:protein2genome:local cds 61 315 . + . LHQN01049708.1 exonerate:protein2genome:local exon 61 315 . + . insertions 0 ; deletions 0 LHQN01049708.1 exonerate:protein2genome:local similarity 61 315 317 + . alignment_id 1 ; Query gi|815909105|ref|XP_012240198.1| ; Align 61 1 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909105|ref|XP_012240198.1| PREDICTED: odorant receptor 4-like isoform X1 [Bombus impatiens] Target: LHQN01049752.1 Habropoda laboriosa contig49752, whole genome shotgun sequence Model: protein2genome:local Raw score: 409 Query range: 83 -> 198 Target range: 54 -> 399 84 : TyrGlyLeuPheCysAspIleLeuSerThrMetGluGluAspCysGlnLysTyrAlaIleMetA : 105 :!!.!!:!!.!! !!|||||||||||||||||||||||||||||||||||||||||| !:!:| HisSerValLeuSerAspIleLeuSerThrMetGluGluAspCysGlnLysTyrAlaAlaValA 55 : CACAGCGTACTTAGTGACATTTTATCAACCATGGAAGAGGATTGTCAGAAATATGCTGCTGTAG : 118 106 : spIleAsnAsnLeuIleThrLysThrGlyLeuPheSerPheTyrMetThrSerMetIleMetSe : 126 ||||||||!!.|||!!::!!|||||||||! ...|||||||||:::||||||!!:|||||||| spIleAsnLysLeuMetSerLysThrGlyGlnLeuSerPheTyrLeuThrSerIleIleMetSe 119 : ATATAAATAAGTTGATGTCAAAAACCGGACAgctatctttttatttaacaagcATTATTATGTC : 181 127 : rSerTyrLeuValSerAlaValCysTyrLeuAlaGlyAlaIleAlaPheGlnGlyThrAsnAsp : 147 |||||||:!!|||||||||!.!! !|||:!!.!!|||.!!|||!..|||||| ...||| ! rSerTyrMetValSerAlaAlaPheTyrIleThrGlyThrIleGlyPheGlnGluAsnAsnAla 182 : TTCGTATATGGTATCTGCAGCATTTTACATAACTGGTACTATTGgatttcaagaaaataatgCT : 244 148 : SerMetSerArgGluLeuLeuLeuLysMetAspLeuProPheGluThrSerGluSerProAsnT : 169 |||:!:||||||||||||||||||||||||||||||||||||! !||||||||||||||||||| SerValSerArgGluLeuLeuLeuLysMetAspLeuProPheGlyThrSerGluSerProAsnT 245 : TCAGTATCTAGGGAGCTCCTTCTGAAAATGGATTTGCCTTTTGGGACCAGCGAATCGCCGAATT : 310 170 : yrGluLeuValValThrThrGlnPheIleIleHisPheSerAlaAlaLeuAlaPheGlyThrPh : 190 ||||||||||||||||||||||| !!:!!|||||| ! ||||||||||||.!!||||||..!|| yrGluLeuValValThrThrGlnValLeuIleHisValSerAlaAlaLeuThrPheGlyValPh 311 : ACGAACTTGTAGTAACTACACAAGTCCTTATTCACGTATCAGCGGCCTTAACATTCGGTGTATT : 373 191 : eThrAlaLeuLeuPheMetMetIle : 198 |!:!|||||||||!!.|||:!!:!! eSerAlaLeuLeuLeuMetValVal 374 : CAGTGCTCTTCTCTTAATGGTGGTA : 399 vulgar: gi|815909105|ref|XP_012240198.1| 83 198 . LHQN01049752.1 54 399 + 409 M 115 345 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049752.1 exonerate:protein2genome:local gene 55 399 409 + . gene_id 1 ; sequence gi|815909105|ref|XP_012240198.1| ; gene_orientation . LHQN01049752.1 exonerate:protein2genome:local cds 55 399 . + . LHQN01049752.1 exonerate:protein2genome:local exon 55 399 . + . insertions 0 ; deletions 0 LHQN01049752.1 exonerate:protein2genome:local similarity 55 399 409 + . alignment_id 1 ; Query gi|815909105|ref|XP_012240198.1| ; Align 55 84 345 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815904383|ref|XP_012238122.1| PREDICTED: odorant receptor Or1-like [Bombus impatiens] Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 277 Query range: 147 -> 306 Target range: 888 -> 245 148 : TyrArgPheSerGluMetValAsnGluGluPheArgThrIleMetPhePheGlnPheTyrThrS : 169 !:!||||||:!!|||!!::!!|||! !:!!|||!!!! !! ||| ! |||||| ..!! PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValT 888 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGA : 825 170 : erLeuCysMetIleCysPheAsnLeuTyrGlnIleThrGlnMetGluMetAspSerAsnIleIl : 190 !! ! ! !!:||||||||||||!:!!:!:!:||||||! :!!:!! !!|||.!.:!!:! hrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysValTyrSerGlnValLe 824 : CCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGGTGTATTCGCAAGTTTT : 762 191 : eGlyArgIleLeuPheMetAsnPheSerLeuMetGlnIlePheTyrTyrCysTrpPheGlyAsn : 211 !!.! !|||! !|||||| ! ! !!!! ||||||||||||! !||||||!:!|||||| uAlaLeuIleProPheMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsn 761 : AGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAAC : 699 212 : GluValLysLeuLysValGlnHisTyrAspGluGluCysAsnLysThrLeuArgLeuAspPheL : 233 |||..!|||:!!||||||!:: !! .!. !!!:! ! :::::: |||...|||| GluThrLysValLysValArgAsp---GlnThrAspPheLeuPheSerIlePheLeuSerPheL 698 : GAGACCAAAGTGAAGGTACGTGAT---CAAACAGACTTCttattctcaattttcctctcgtttc : 636 234 : euTyrAlaSerHisValTyrSerLeuGlu<->LeuSer-----AspValIlePheArgSerAsp : 251 ||!:! ! !!:!!||| !!|||! !..! |||!.!#####|||..!:!!|||..!|||:!! euPheLeuArgAsnValAspSerArgArgAlaLeuLys#####AspThrValPheGluSerAsn 635 : tgTTTCTACGTAATGTTGATTCTCGTAGAGCCTTGAAATTTGCGACACAGTATTCGAAAGCAAC : 574 252 : TrpThrSerLeuAsnAsnAsnValLysArgAlaPheLeuMetLeuMetArgArgAlaMetArgP : 273 ||||||:!!|||!:!.!.!:!..!|||!:!.!!.!!|||! !:!!||| !|||:!!:!!!:!| TrpThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysP 573 : TGGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGC : 508 274 : roIleGluPheThrSerIleTyrValIleSerValAsnLeuGluSerPheMetThr >>>> T : 292 ||||||||||||||.!! !!:!|||.!! !!||||||||||||||||||! !:! roIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSerPheLysSer++ 507 : CAATAGAATTCACCGGCGCTTTCGTTTTTCCCGTAAATTTGGAGTCTTTTAAAAGTgt...... : 449 293 : arget Intron 1 >>>> LeuLeuLysThrSerTyrSerValPheSerValPheGlnGlnS : 306 161 bp |||:!!|||||||||||||||||||||!:!|||.!!||||||! ++LeuValLysThrSerTyrSerValPheAsnValIleGlnGlnT 448 : ...................agTTGGTGAAAACTTCCTATTCGGTATTCAACGTAATCCAGCAAA : 248 307 : er : 306 !! hr 247 : CG : 246 vulgar: gi|815904383|ref|XP_012238122.1| 147 306 . LHQN01050085.1 888 245 - 277 M 72 216 G 1 0 M 22 66 G 0 3 M 2 6 F 0 5 M 47 141 5 0 2 I 0 157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 246 888 277 - . gene_id 1 ; sequence gi|815904383|ref|XP_012238122.1| ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 452 888 . - . LHQN01050085.1 exonerate:protein2genome:local exon 452 888 . - . insertions 3 ; deletions 1 ; frameshifts 5 LHQN01050085.1 exonerate:protein2genome:local splice5 450 451 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 291 451 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 291 292 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 246 290 . - . LHQN01050085.1 exonerate:protein2genome:local exon 246 290 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 246 888 277 - . alignment_id 1 ; Query gi|815904383|ref|XP_012238122.1| ; Align 889 148 216 ; Align 673 221 66 ; Align 604 243 6 ; Align 593 245 141 ; Align 291 292 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815904383|ref|XP_012238122.1| PREDICTED: odorant receptor Or1-like [Bombus impatiens] Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 161 Query range: 83 -> 128 Target range: 1345 -> 1210 84 : AspSerLeuTyrSerGlyLeuLeuIleHisIleThrCysGlnPheGluIleLeuGluHisAr : 104 |||!:!|||!:!||||||||||||||||||||| !||||||||||||||||||:!!||||| AspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisAr 1345 : GACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCG : 1285 105 : gLeuLysAsnIleGluSerAsnGlnAsnTyrSerValLysLeuCysValArgHisHisAsnG : 125 |||||||!:!|||:!! !!:!!::!.!.||||||!.!|||! !|||!.! !|||||| !!! gLeuLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrA 1284 : TCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATC : 1222 126 : lnIleTyrLys : 128 ::||||||||| rgIleTyrLys 1221 : GCATATACAAG : 1211 vulgar: gi|815904383|ref|XP_012238122.1| 83 128 . LHQN01050085.1 1345 1210 - 161 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 1211 1345 161 - . gene_id 2 ; sequence gi|815904383|ref|XP_012238122.1| ; gene_orientation . LHQN01050085.1 exonerate:protein2genome:local cds 1211 1345 . - . LHQN01050085.1 exonerate:protein2genome:local exon 1211 1345 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 1211 1345 161 - . alignment_id 2 ; Query gi|815904383|ref|XP_012238122.1| ; Align 1346 84 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815909105|ref|XP_012240198.1| PREDICTED: odorant receptor 4-like isoform X1 [Bombus impatiens] Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 258 Query range: 308 -> 375 Target range: 824 -> 1194 309 : SerGlnLeuIleGlyAspThrAlaTyrAsnMetLeuTrpTyrAspLeuArgProAsnLysSe : 329 |||||||||||||||:!!|||||||||.!..!.|||||||||||||||||| !!!.!:!!|| SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSe 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAG : 885 330 : rArgLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrLeuThrPheGlyLysP : 350 |!:!||||||||||||||||||||||||||||||||||||||||||!..||||||||||||| rGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysP 886 : CCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaat : 948 351 : heSerAsnLeuSerLeuGluSerPheThrGly >>>> Target Intron 1 >>>> I : 361 |||||:::|||||||||||||||||||||!.! 169 bp | heSerSerLeuSerLeuGluSerPheThrAla++ ++I 949 : tttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.........................agA : 1150 362 : leMetLysValSerAlaSerTyrMetSerValLeuLeuAlaLeu : 375 |||||||||||||||||||||||!!:|||||||||||||||:!! leMetLysValSerAlaSerTyrIleSerValLeuLeuAlaVal 1151 : TCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTG : 1194 vulgar: gi|815909105|ref|XP_012240198.1| 308 375 . LHQN01050112.1 824 1194 + 258 M 52 156 5 0 2 I 0 165 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 1194 258 + . gene_id 1 ; sequence gi|815909105|ref|XP_012240198.1| ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 825 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1194 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1194 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 1194 258 + . alignment_id 1 ; Query gi|815909105|ref|XP_012240198.1| ; Align 825 309 156 ; Align 1150 361 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893327|ref|XP_012238845.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414583.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold34, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 127 -> 212 Target range: 619735 -> 619990 128 : MetArgTyrSerAspAsnMetLeuPheTyrArgGlyTyrPheProTyrAsnIleThrI : 147 |||!:! !!! !!.!.:!:|||!!. !:!!.!!::!:!|||||||||:!!|||| MetLysArgThrTyrGlnLeuLeuLeuIleLysAlaTrpTyrProTyrAsnValThrI 619736 : ATGAAACGGACGTATCAACTTTTATTGATAAAAGCATGGTATCCTTATAATGTAACAA : 619793 148 : leSerProAsnTyrGluLeuThrMetIleGlyGlnPheMetAlaThrPheTyrAlaAl : 166 |||||||| !||||||...|||:::::: ||| !!:!!!.!..! ! .. leSerProAlaTyrGluPheThrIleLeuHisGlnValValGlyValThrValAsnCy 619794 : TTTCGCCAGCTTAtgaatttactattttacatCAAGTCGTGGGTGTCACTGtaaattg : 619850 167 : aThrThrTyrThrAlaValAspThrPheValValLeuLeuIlePheHisValCysGly : 185 . ... ..!|||:!!|||||||||:!!..! !!!!|||.!. !!.!||| !! sIleAsnAsnValAlaIleAspThrPheIleThrGlyPheIleIleThrAlaCysCys 619851 : tattaataatGTAGCAATAGATACTTTTATAACAGGTTTTATAATAACTGCTTGTTGC : 619907 186 : GlnLeuSerAsnLeuArgAspAspLeuArgLysIleHisSerTyrAspLysLysAspL : 205 ||||||!!! !|||!!! !!:!!:!! !..!||||||! ! ! ! :!!|||!!:! GlnLeuThrLeuLeuSerTyrAsnIleSerSerIleHisTyrGluAlaGluLysGluP 619908 : CAATTGACACTCTTAAGTTATAACATCTCTTCGATACACTATGAAGCGGAGAAAGAAT : 619967 206 : euGluLysLysLeuGlnLysIle : 212 !!! !:! !.!. ! ||| heValAlaArgThrAspAspIle 619968 : TTGTTGCTAGGACTGATGATATC : 619990 vulgar: gi|815893327|ref|XP_012238845.1| 127 212 . KQ414583.1 619735 619990 + 126 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414583.1 exonerate:protein2genome:local gene 619736 619990 126 + . gene_id 1 ; sequence gi|815893327|ref|XP_012238845.1| ; gene_orientation . KQ414583.1 exonerate:protein2genome:local cds 619736 619990 . + . KQ414583.1 exonerate:protein2genome:local exon 619736 619990 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local similarity 619736 619990 126 + . alignment_id 1 ; Query gi|815893327|ref|XP_012238845.1| ; Align 619736 128 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893327|ref|XP_012238845.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 273 -> 327 Target range: 1306784 -> 1306619 274 : TyrValValTyrValMetLeuHisLeuPheLeuTyrCysTyrMetGlyGluLysLe : 292 |||:!! !! :!! !|||!!.|||!!.|||!::|||! ||||||! || TyrLeuSerSerIleTrpLeuGlnLeuLeuLeuTrpCysLeuProGlyGluIleLe 1306784 : TATTTGTCCTCGATTTGGTTGCAACTTTTGTTATGGTGTTTGCCCGGTGAAATTCT : 1306730 293 : uThrSerGluSerThrGluIleAlaAspThrValTyr<->AsnAlaGluTrpTyrA : 310 |..!..!|||||| !||||||!.! !!..!|||||| |||!.! !||||||| uValGlnGluSerLeuGluIleGlyHisValValTyrLeuAsnValProTrpTyrA 1306729 : CGTTCAAGAGAGTTTAGAAATAGGACACGTAGTCTACTTAAATGTACCATGGTACA : 1306673 311 : snLeuProProLysAsnAlaArgTrpLeuIleIleIleMetCysArgAlaArg : 327 |||||||||||! !! !||| ||| !!!:!!:!!: !||||||!:! snLeuProProIleTyrGlnArgLysLeuCysMetMetIleLeuArgAlaGln 1306672 : ATTTGCCGCCAATTTACCAGAGAAAACTTTGCATGATGATCCTTAGGGCACAA : 1306620 vulgar: gi|815893327|ref|XP_012238845.1| 273 327 . KQ414608.1 1306784 1306619 - 105 M 31 93 G 0 3 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1306620 1306784 105 - . gene_id 1 ; sequence gi|815893327|ref|XP_012238845.1| ; gene_orientation . KQ414608.1 exonerate:protein2genome:local cds 1306620 1306784 . - . KQ414608.1 exonerate:protein2genome:local exon 1306620 1306784 . - . insertions 3 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1306620 1306784 105 - . alignment_id 1 ; Query gi|815893327|ref|XP_012238845.1| ; Align 1306785 274 93 ; Align 1306689 305 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893327|ref|XP_012238845.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 139 -> 204 Target range: 204044 -> 204239 140 : TyrPheProTyrAsnIleThrIleSerProAsnTyrGluLeuThrMetIleGlyGlnP : 159 |||::: |||:::|||:!! !!!!||| !!!:!|||:!!! !.!.:!! !|||. TyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnM 204045 : tattatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAA : 204102 160 : heMetAlaThrPheTyrAlaAlaThrThrTyrThrAlaValAspThrPheValValLe : 178 !. .!! ! ! ! !||| ! !|||! !!.!||||||!.!||| !!! !:! etAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIl 204103 : TGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAAT : 204159 179 : uLeuIlePheHisValCysGlyGlnLeuSerAsnLeuArgAspAspLeuArgLysIle : 197 !||||||.!!|||:!!||||||||||||..!||||||||| ||| !!!.||| eLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIle 204160 : ATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATA : 204216 198 : HisSerTyrAspLysLysAsp : 204 ! !! !!:! ||| LysHisLeuGluThrPheAsp 204217 : AAACATTTGGAAACTTTTGAT : 204239 vulgar: gi|815893327|ref|XP_012238845.1| 139 204 . KQ414617.1 204044 204239 + 115 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204045 204239 115 + . gene_id 1 ; sequence gi|815893327|ref|XP_012238845.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204045 204239 . + . KQ414617.1 exonerate:protein2genome:local exon 204045 204239 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204045 204239 115 + . alignment_id 1 ; Query gi|815893327|ref|XP_012238845.1| ; Align 204045 140 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893755|ref|XP_012249963.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 25 -> 211 Target range: 203564 -> 204218 26 : IleIleIleSerLeuAlaLeuPhePheValSerProGlyPheTyrTyrValPhePheL : 45 |||:!::!:! !:!! !!!! !!! !||| !||| !!.!!|||! !:!!.!! : IleValLeuIleIleLeuPheValCysValLeuProCysLeuTyrSerLeuIleLysG 203565 : ATCGTGCTGATAATCCTCTTCGTTTGTGTACTTCCTTGCCTCTACTCTTTGATCAAAC : 203622 46 : ysGluLysSerAsnLysArgLysLeuGlnIleIleThrThrTyrIleAsnSerPheVa : 64 !! ! ||| ! ! ! !:!!.!.! !:!!:!! ! !||| !! ! :! lnCysAspSerLeuMetAlaValIleAspAsnLeuSerTyrThrIleProLeuThrIl 203623 : AATGTGACAGTTTAATGGCGGTGATAGATAATCTTTCATATACTATTCCTTTGACAAT : 203679 65 : lGlnLeuIleLysTyrIleIleIleLeuTyrArgMetLys{A} >>>> Target I : 78 ! !|||!!:|||||||||:!!|||||| !!:!! :::{!} 93 eThrLeuMetLysTyrIleValIleLeuSerLysLysGlu{V}++ 203680 : AACACTGATGAAGTATATCGTTATATTGAGTAAAAaggaa{g}gt............. : 203724 79 : ntron 1 >>>> {sp}IleArgIleLeuSerGluGluIleArgAsnAspTrpLeuH : 92 bp { !}:!! ! !||| !.!. !||| !.!.|||||| ! ++{al}LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaL 203725 : ............ag{TT}CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAA : 203856 93 : isSerThrGluGluAsnArgArgLeuPheArgGluAsnAlaLysIleGlyGluArgVa : 111 ! ! !! ! !!!: !..!||| ! ! ! ! !.!. !! ! ! ! |||!. ysLeuLysThrAspPheGluArgAspValMetIleGlnArgThrArgIleThrArgAl 203857 : AGTTGAAAACGGATTTCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGC : 203913 112 : lValPheIleAlaAlaPheThrLeuTyrSerGlyGlyPheCysTyrArgThrIleLeu : 130 !..! !||| !::!!:!.!!||| ! ! !!.! ! !:!! !! !:!!||| aThrSerIleLeuSerTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeu 203914 : AACCAGTATACTGAGTTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTA : 203970 131 : ProLeuThrArgSerSerIleValLeuProAsnAsnIleThr<-><->IleArgIleL : 148 ||| !||| !!! !!!!! ! !! ! !!..||| !||| ! !!:!:!!! ProArgThrGlyIleThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuP 203971 : CCAAGAACCGGTATTACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTT : 204030 149 : euProSerProThrTyrLeuProPheIleAsnGluGlnIleThrProTyrTyrGluIl : 167 !!||| !||||||||| ::: ...:!! |||||||||!:!||||| heProValProThrTyrTyrIleTyrAspIleSerGlu---ThrProTyrPheGluIl 204031 : TTCCGGTGCCaacttattatatttacgatataTCTGAA---ACTCCATATTTTGAGAT : 204084 168 : eIlePheValLeuGlnValLeuSerGlyPheCysIleTyrThrValPheSerGlyAla : 186 |!!:|||:!!||||||:!! !!!! ! ! ! !!: ! !!:!! !|||!.! eMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyVal 204085 : AATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTC : 204141 187 : IleGlyIleMetMetMetIleCysLeuHisThrCysGlyLeuIleArgIleLeuMetA : 206 !..!.!!.!. !!::!: !||||||! !||||||! !:!:..!! !||| AspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgT 204142 : GATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTA : 204201 207 : spLysLeuValAspLeu : 211 ::!|||!.!:!!:!! hrArgLeuAlaAsnIle 204202 : CACGACTTGCAAACATA : 204218 vulgar: gi|815893755|ref|XP_012249963.1| 25 211 . KQ414617.1 203564 204218 + 101 M 52 156 S 0 1 5 0 2 I 0 89 3 0 2 S 1 2 M 66 198 G 0 6 M 16 48 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203565 204218 101 + . gene_id 1 ; sequence gi|815893755|ref|XP_012249963.1| ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203565 203721 . + . KQ414617.1 exonerate:protein2genome:local exon 203565 203721 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 203722 203723 . + . intron_id 1 ; splice_site "gt" KQ414617.1 exonerate:protein2genome:local intron 203722 203814 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 203813 203814 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 203815 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 203815 204218 . + . insertions 6 ; deletions 1 KQ414617.1 exonerate:protein2genome:local similarity 203565 204218 101 + . alignment_id 1 ; Query gi|815893755|ref|XP_012249963.1| ; Align 203565 26 156 ; Align 203817 79 198 ; Align 204021 145 48 ; Align 204069 162 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893711|ref|XP_012249779.1| PREDICTED: odorant receptor 43a [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 197 Query range: 25 -> 102 Target range: 19834 -> 19490 26 : ValPheLeuLeuAlaGlnLeuValHisIlePhePhePheLeuLeuGlnGlyGlnPheVal : 45 ..!|||!!!:!!!.!||| ! !!|||:!!||||||!!. !:!!||||||||||||||| ThrPhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGlnGlyGlnPheVal 19834 : ACGTTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGGACAATTTGTG : 19777 46 : LeuAsnAlaAsnAspGluPheAlaGluSer{Il} >>>> Target Intron 1 >>> : 56 :!!|||||| !||||||.!. !!!:!.!{||} 113 bp IleAsnAlaPheAspGluLeuTyrAspLys{Il}++ 19776 : ATAAACGCATTCGACGAACTGTACGACAAG{AT}gt........................ : 19740 57 : > {e}TyrAsnThrPheTrpTyrAsnThrAsnThrArgThrLysLeuLeuLeuValLeu : 74 {|}|||.!.:!! ||||||||| !!.! !!||||||:!! !|||! !|||||| ++{e}TyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeu 19739 : .ag{A}TACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTG : 19577 75 : ValLeuArgSerCysSerSerAlaProAsnLeuSerAlaGlyGlyLeuLeuValPheAsn : 94 !.!|||||||||||| !!:! !!||| |||!!!|||||||||:!! !..!!!.||| AlaLeuArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsn 19576 : GCATTGAGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAAT : 19517 95 : LeuLysAsnPheSerGluIleLeu : 102 |||::!:::|||:!!|||:!::!! LeuArgSerPheAlaGluValIle 19516 : CTACGATCGTTCGCAGAGGTGATT : 19491 vulgar: gi|815893711|ref|XP_012249779.1| 25 102 . KQ414772.1 19834 19490 - 197 M 30 90 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 19491 19834 197 - . gene_id 1 ; sequence gi|815893711|ref|XP_012249779.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 19743 19834 . - . KQ414772.1 exonerate:protein2genome:local exon 19743 19834 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 19741 19742 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 19630 19742 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 19630 19631 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 19491 19629 . - . KQ414772.1 exonerate:protein2genome:local exon 19491 19629 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 19491 19834 197 - . alignment_id 1 ; Query gi|815893711|ref|XP_012249779.1| ; Align 19835 26 90 ; Align 19629 57 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893711|ref|XP_012249779.1| PREDICTED: odorant receptor 43a [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 26 -> 101 Target range: 17271 -> 16644 27 : PheLeuLeuAlaGlnLeuValHisIlePhePhePheLeuLeuGlnGlyGlnPheValLeu : 46 ||| !|||..!||||||:!!|||:!:||| !!.!!:!!||||||||||||||||||||| PheThrLeuCysGlnLeuMetHisLeuPheValIleMetLeuGlnGlyGlnPheValLeu 17271 : TTTACGTTGTGTCAACTGATGCACCTGTTCGTTATCATGCTTCAGGGACAGTTCGTGCTG : 17214 47 : Asn{Al} >>>> Target Intron 1 >>>> {a}AsnAspGluPheAlaGluSer : 55 :!!{:!} 402 bp {!}..!|||!!: !! ! ||| Asp{Se}++ +-{r}ArgAspAspAsnGluThrSer 17213 : GAT{TC}gt.........................ac{A}CGCGATGATAATGAAACTTCC : 16785 56 : IleTyrAsnThrPheTrpTyrAsnThrAsnThrArgThrLysLeuLeuLeuValLeuVal : 75 ! !|||.!.:!!!!.||||||!..!:!::!:!!!:!|||:!! !|||! !|||:!!!.! ArgTyrGluSerLeuTrpTyrThrSerSerSerLysThrGlnAlaLeuTyrValValAla 16784 : AGATACGAATCATTATGGTACACAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCG : 16725 76 : LeuArgSerCysSerSerAlaProAsnLeuSerAlaGlyGlyLeuLeuValPheAsnLeu : 95 ||||||!!! ! !!!! !! !! !|||!!!||||||||||||:!! !.!.|||:!! LeuArgArgAsnLeuThrProThrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMet 16724 : TTACGAAGAAACCTAACACCTACCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATG : 16665 96 : LysAsnPheSerGluIle : 101 :!!!:!|||:!!|||:!! GlnSerPheAlaGluVal 16664 : CAAAGCTTCGCAGAGGTA : 16645 vulgar: gi|815893711|ref|XP_012249779.1| 26 101 . KQ414772.1 17271 16644 - 135 M 21 63 S 0 2 5 0 2 I 0 398 3 0 2 S 1 1 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 16645 17271 135 - . gene_id 2 ; sequence gi|815893711|ref|XP_012249779.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 17207 17271 . - . KQ414772.1 exonerate:protein2genome:local exon 17207 17271 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 17205 17206 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 16805 17206 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 16805 16806 . - . intron_id 0 ; splice_site "AC" KQ414772.1 exonerate:protein2genome:local cds 16645 16804 . - . KQ414772.1 exonerate:protein2genome:local exon 16645 16804 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 16645 17271 135 - . alignment_id 2 ; Query gi|815893711|ref|XP_012249779.1| ; Align 17272 27 63 ; Align 16804 49 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893711|ref|XP_012249779.1| PREDICTED: odorant receptor 43a [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 14 -> 101 Target range: 45158 -> 44867 15 : AlaAsnIleSerGlyGlnLeuIleLysAspIleValPheLeuLeuAlaGlnLeuValHis : 34 .!!.!.|||||| !.!.:!! !!:! !..!||||||:!!|||||| !|||||| ThrGluIleSerPheAspIleCysArgLeuCysThrPheLeuIleAlaGlnThrValHis 45158 : ACAGAAATTAGCTTCGATATATGCAGATTGTGCACGTTCCTGATCGCACAAACTGTACAC : 45101 35 : IlePhePhePheLeuLeuGlnGlyGlnPheValLeuAsnAlaAsnAspGlu >>>> Ta : 52 !!:.!.|||!!. !:!!|||||||||||||||:!!:!!:!!:!!||| ! MetLeuPheLeuThrIleGlnGlyGlnPheValIleAspSerHisAspThr++ 45100 : ATGCTGTTTTTGACGATTCAGGGACAGTTCGTGATCGATTCGCATGATACAgt....... : 45045 53 : rget Intron 1 >>>> PheAlaGluSerIleTyrAsnThrPheTrpTyrAsnThrA : 65 30 bp ! :!!! !! !|||.!..!!.!!||||||!!.! ! ++***SerValHisArgTyrGluAlaIleTrpTyrLysMetP 45044 : ..................agTAATCTGTTCACAGATACGAGGCAATTTGGTATAAGATGC : 44978 66 : snThrArgThrLysLeuLeuLeuValLeuValLeuArgSerCysSerSerAlaProAsnL : 85 !!!:! !:!!|||||| !|||:!!!.!||||||!.! !! !!!! !!|||! | roProLysLeuGlnLeuLeuAspValValAlaLeuArgLysSerLeuThrProProIleL 44977 : CACCTAAACTTCAGTTGCTAGACGTTGTAGCGCTTAGAAAAAGCCTAACTCCTCCTATAC : 44918 86 : euSerAlaGlyGlyLeuLeuValPheAsnLeuLysAsnPheSerGluIle : 101 ||!!!||||||||||||:!! !!!.:!!|||!!.::!|||:!!:!!:!: euThrAlaGlyGlyLeuMetArgLeuAspLeuAsnSerPheAlaGlnVal 44917 : TGACGGCGGGAGGGTTGATGCGGTTAGATTTGAATTCTTTCGCACAGGTG : 44868 vulgar: gi|815893711|ref|XP_012249779.1| 14 101 . KQ414772.1 45158 44867 - 121 M 37 111 5 0 2 I 0 26 3 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 44868 45158 121 - . gene_id 3 ; sequence gi|815893711|ref|XP_012249779.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 45048 45158 . - . KQ414772.1 exonerate:protein2genome:local exon 45048 45158 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 45046 45047 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 45018 45047 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 45018 45019 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 44868 45017 . - . KQ414772.1 exonerate:protein2genome:local exon 44868 45017 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 44868 45158 121 - . alignment_id 3 ; Query gi|815893711|ref|XP_012249779.1| ; Align 45159 15 111 ; Align 45018 52 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893711|ref|XP_012249779.1| PREDICTED: odorant receptor 43a [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 9 -> 56 Target range: 12846 -> 12705 10 : LysValAlaSerGlnAlaAsnIleSerGlyGlnLeuIleLysAspIleValPheLeuLeu : 29 ||| !!.!|||.!.:!!.!.|||!:!!.!:!!!!! !|||||| !..!|||:!!:!! LysGlnValSerAsnSerGluIleAsnAlaGluPheAlaLysAspCysThrPheIleVal 12846 : AAACAGGTGTCGAACTCGGAGATTAATGCGGAGTTTGCCAAGGATTGCACATTTATCGTG : 12789 30 : AlaGlnLeuValHisIlePhePhePheLeuLeuGlnGlyGlnPheValLeuAsnAlaAsn : 49 !|||||||||||||||.!!!:!.!. !||||||||||||||||||:!!:!!|||||| IleGlnLeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAspAlaAsn 12788 : ATTCAATTGGTACACATACTTTACCTAACTCTTCAAGGACAATTCGTGATCGACGCGAAC : 12729 50 : AspGluPheAlaGluSerIle : 56 !!:|||.!! !||||||!!: GluGluIlePheGluSerMet 12728 : GAGGAAATCTTCGAATCGATG : 12706 vulgar: gi|815893711|ref|XP_012249779.1| 9 56 . KQ414772.1 12846 12705 - 117 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 12706 12846 117 - . gene_id 4 ; sequence gi|815893711|ref|XP_012249779.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 12706 12846 . - . KQ414772.1 exonerate:protein2genome:local exon 12706 12846 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 12706 12846 117 - . alignment_id 4 ; Query gi|815893711|ref|XP_012249779.1| ; Align 12847 10 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893711|ref|XP_012249779.1| PREDICTED: odorant receptor 43a [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 56 -> 104 Target range: 35609 -> 35465 57 : TyrAsnThrPheTrpTyrAsnThrAsnThrArgThrLysLeuLeuLeuValLeuValLeu : 76 |||!:!.!! |||||||||!:!::: !!||||||:!! !|||! !||||||!.!||| TyrSerAlaLysTrpTyrAsnSerSerProArgThrGlnThrLeuTyrValLeuAlaLeu 35609 : TATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAAACTCTGTACGTGCTAGCTTTG : 35552 77 : ArgSerCysSerSerAlaProAsnLeuSerAlaGlyGlyLeuLeuValPheAsnLeuLys : 96 |||!!! !!! !!!! !!||| |||!!!||||||||||||:!! !!!.||||||:!! ArgArgSerLeuThrProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGlu 35551 : AGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGATTTCCTTGAATTTGGAG : 35492 97 : AsnPheSerGluIleLeuLysThr : 104 !.!|||:!!|||:!! !! !||| ThrPheAlaGluValAsnMetThr 35491 : ACTTTTGCCGAGGTAAATATGACA : 35466 vulgar: gi|815893711|ref|XP_012249779.1| 56 104 . KQ414772.1 35609 35465 - 112 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 35466 35609 112 - . gene_id 5 ; sequence gi|815893711|ref|XP_012249779.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 35466 35609 . - . KQ414772.1 exonerate:protein2genome:local exon 35466 35609 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 35466 35609 112 - . alignment_id 5 ; Query gi|815893711|ref|XP_012249779.1| ; Align 35610 57 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893711|ref|XP_012249779.1| PREDICTED: odorant receptor 43a [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 56 -> 101 Target range: 37043 -> 36908 57 : TyrAsnThrPheTrpTyrAsnThrAsnThrArgThrLysLeuLeuLeuValLeuValLeu : 76 |||!:!.!! |||||||||!:!::: !!||||||:!! !|||! !||||||!.!||| TyrSerAlaLysTrpTyrAsnSerSerProArgThrGlnThrLeuTyrValLeuAlaLeu 37043 : TATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAAACTCTGTACGTGCTAGCTTTG : 36986 77 : ArgSerCysSerSerAlaProAsnLeuSerAlaGlyGlyLeuLeuValPheAsnLeuLys : 96 |||!!! !!! !!!! !!||| |||!!!||||||||||||:!! !!!.||||||:!! ArgArgSerLeuThrProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGlu 36985 : AGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGATTTCCTTGAATTTGGAG : 36926 97 : AsnPheSerGluIle : 101 !.!|||:!!|||::: ThrPheAlaGluVal 36925 : ACTTTTGCCGaggta : 36909 vulgar: gi|815893711|ref|XP_012249779.1| 56 101 . KQ414772.1 37043 36908 - 111 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 36909 37043 111 - . gene_id 6 ; sequence gi|815893711|ref|XP_012249779.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 36909 37043 . - . KQ414772.1 exonerate:protein2genome:local exon 36909 37043 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 36909 37043 111 - . alignment_id 6 ; Query gi|815893711|ref|XP_012249779.1| ; Align 37044 57 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893711|ref|XP_012249779.1| PREDICTED: odorant receptor 43a [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 56 -> 101 Target range: 41380 -> 41245 57 : TyrAsnThrPheTrpTyrAsnThrAsnThrArgThrLysLeuLeuLeuValLeuValLeu : 76 |||:!!.!! ! |||||||||!:!!.. !!||||||:!! !|||! !:!!|||!.!||| TyrAspAlaValTrpTyrAsnSerThrProArgThrGlnThrLeuTyrMetLeuAlaLeu 41380 : TACGATGCAGTATGGTACAACAGTACGCCAAGAACGCAAACTTTGTACATGCTAGCTTTG : 41323 77 : ArgSerCysSerSerAlaProAsnLeuSerAlaGlyGlyLeuLeuValPheAsnLeuLys : 96 |||!!! !! !!!! !!||| |||!!!||||||||||||::: ...||||||::: ArgArgThrLeuThrProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGlu 41322 : AGGAGGACTTTAACTCCACCACTGCTCACTGCAGGAGGACtgatttcgttgaatttggaa : 41263 97 : AsnPheSerGluIle : 101 ...||||||:!!:!! ThrPheSerLysVal 41262 : actttttcGAAGGTA : 41246 vulgar: gi|815893711|ref|XP_012249779.1| 56 101 . KQ414772.1 41380 41245 - 108 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 41246 41380 108 - . gene_id 7 ; sequence gi|815893711|ref|XP_012249779.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 41246 41380 . - . KQ414772.1 exonerate:protein2genome:local exon 41246 41380 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 41246 41380 108 - . alignment_id 7 ; Query gi|815893711|ref|XP_012249779.1| ; Align 41381 57 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893599|ref|XP_012249301.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 269 Query range: 23 -> 116 Target range: 19846 -> 19369 24 : IleLysAspSerValPheLeuLeuSerGlnLeuIleHisIleLeuLeuLeuThrValGln : 43 :!! ! !!.!!..!|||!!!:!!.!!||| !.!!|||:!!!!!!!!|||!.!|||||| ValValHisGlyThrPhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGln 19846 : GTTGTGCACGGAACGTTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAG : 19789 44 : GlyGlnPheValLeuAsnSerAsnAspGluIleIleGluSer{Il} >>>> Target : 58 ||||||||||||:!!|||:!! !||||||:!: !!!:!.!{||} 11 GlyGlnPheValIleAsnAlaPheAspGluLeuTyrAspLys{Il}++ 19788 : GGACAATTTGTGATAAACGCATTCGACGAACTGTACGACAAG{AT}gt............ : 19740 59 : Intron 1 >>>> {e}TyrAspAlaSerTrpTyrAsnAlaAsnArgLysThrGlnLeu : 72 3 bp {|}|||!!::!!..!||||||||| !!.!! !!:!|||||| ! ++{e}TyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAla 19739 : .............ag{A}TACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCG : 19589 73 : LeuPheValLeuSerIleArgSerCysLeuSerProProIleLeuSerAlaGlyGlyLeu : 92 |||!:!||||||:!!:!:||||||||||||!:!||||||:!:|||!!!|||||||||:!! LeuTyrValLeuAlaLeuArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMet 19588 : TTGTATGTATTGGCATTGAGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATG : 19529 93 : LeuAspLeuAsnLeuLysAsnPheAlaGlu >>>> Target Intron 2 >>>> I : 103 ! |||||||||::!:::||||||||| 85 bp | ThrThrLeuAsnLeuArgSerPheAlaGlu++ ++I 19528 : ACGACGTTGAATCTACGATCGTTCGCAGAGgt.........................agA : 19411 104 : leIleLysAlaSerValSerTyrPheThrValLeuLysSer : 116 |||||||||||||||||||||||!:!||||||:!!:!!!!! leIleLysAlaSerValSerTyrTyrThrValMetGlnThr 19410 : TCATCAAAGCATCTGTTTCCTACTACACGGTGATGCAGACC : 19370 vulgar: gi|815893599|ref|XP_012249301.1| 23 116 . KQ414772.1 19846 19369 - 269 M 34 102 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 44 132 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 19370 19846 269 - . gene_id 1 ; sequence gi|815893599|ref|XP_012249301.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 19743 19846 . - . KQ414772.1 exonerate:protein2genome:local exon 19743 19846 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 19741 19742 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 19630 19742 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 19630 19631 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 19497 19629 . - . KQ414772.1 exonerate:protein2genome:local exon 19497 19629 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 19495 19496 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 19412 19496 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 19412 19413 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 19370 19411 . - . KQ414772.1 exonerate:protein2genome:local exon 19370 19411 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 19370 19846 269 - . alignment_id 1 ; Query gi|815893599|ref|XP_012249301.1| ; Align 19847 24 102 ; Align 19629 59 132 ; Align 19412 103 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893599|ref|XP_012249301.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 262 Query range: 24 -> 117 Target range: 32101 -> 31644 25 : LysAspSerValPheLeuLeuSerGlnLeuIleHisIleLeuLeuLeuThrValGlnGly : 44 ||||||!!! !||||||:!! !||||||:!!|||:!:|||!!!|||:!!:!!|||||| LysAspCysSerPheLeuValValGlnLeuValHisLeuLeuPheLeuSerIleGlnGly 32101 : AAGGATTGCAGTTTCCTTGTGGTGCAGCTGGTTCATTTGCTTTTCCTTTCCATCCAGGGA : 32044 45 : GlnPheValLeuAsnSerAsnAspGluIleIleGluSer{Il} >>>> Target Int : 58 !!.||||||:!! !|||:!!|||:!!:!! !!!:|||{||} 101 b HisPheValIleValSerHisAspGlnValTyrAspSer{Il}++ 32043 : CACTTCGTTATAGTCTCGCATGATCAGGTTTACGATAGT{AT}gt............... : 31998 59 : ron 1 >>>> {e}TyrAspAlaSerTrpTyrAsnAlaAsnArgLysThrGlnLeuLeu : 73 p {|}|||..!|||!!!||||||!!.::!!..! !!:!|||||| !||| ++{e}TyrSerAlaThrTrpTyrLysSerThrProArgThrGlnThrLeu 31997 : ..........ag{A}TACAGTGCAACGTGGTACAAGAGTACGCCGAGAACGCAAACTTTG : 31856 74 : PheValLeuSerIleArgSerCysLeuSerProProIleLeuSerAlaGlyGlyLeuLeu : 93 !:!! !|||:!!:!:|||!!! !!|||!!!||||||:!:|||!!!||||||||||||:!! TyrGlyLeuAlaLeuArgArgGlyLeuThrProProValLeuThrAlaGlyGlyLeuIle 31855 : TACGGGCTAGCTTTGAGAAGAGGCTTGACTCCACCGGTGCTCACAGCTGGAGGATTGATT : 31796 94 : AspLeuAsnLeuLysAsnPheAlaGlu >>>> Target Intron 2 >>>> IleI : 104 ...|||||||||:!!!.!||||||||| 77 bp |||: SerLeuAsnLeuGluThrPheAlaGlu++ ++IleL 31795 : TCGTTGAATCTGGAGACTTTTGCTGAGgt.........................agATAT : 31686 105 : leLysAlaSerValSerTyrPheThrValLeuLysSerThr : 117 !!|||||||||||||||!::|||||||||:!!||||||||| euLysAlaSerValSerTrpPheThrValMetLysSerThr 31685 : TAAAAGCATCCGTTTCCTGGTTCACGGTAATGAAATCGACA : 31645 vulgar: gi|815893599|ref|XP_012249301.1| 24 117 . KQ414772.1 32101 31644 - 262 M 33 99 S 0 2 5 0 2 I 0 97 3 0 2 S 1 1 M 44 132 5 0 2 I 0 73 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 31645 32101 262 - . gene_id 2 ; sequence gi|815893599|ref|XP_012249301.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 32001 32101 . - . KQ414772.1 exonerate:protein2genome:local exon 32001 32101 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 31999 32000 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 31900 32000 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 31900 31901 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 31767 31899 . - . KQ414772.1 exonerate:protein2genome:local exon 31767 31899 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 31765 31766 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 31690 31766 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 31690 31691 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 31645 31689 . - . KQ414772.1 exonerate:protein2genome:local exon 31645 31689 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 31645 32101 262 - . alignment_id 2 ; Query gi|815893599|ref|XP_012249301.1| ; Align 32102 25 99 ; Align 31899 59 132 ; Align 31690 103 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893599|ref|XP_012249301.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 259 Query range: 24 -> 117 Target range: 41599 -> 41109 25 : LysAspSerValPheLeuLeuSerGlnLeuIleHisIleLeuLeuLeuThrValGlnGly : 44 ||||||!!!|||||||||:!! !||||||:!!|||:!:|||!!!|||.!!:!!|||||| LysAspCysValPheLeuValValGlnLeuValHisLeuLeuPheLeuAlaIleGlnGly 41599 : AAAGATTGCGTATTCTTGGTGGTGCAGCTCGTTCATTTGCTTTTCCTTGCCATACAGGGA : 41542 45 : GlnPheValLeuAsnSerAsnAspGluIleIleGluSer{Il} >>>> Target Int : 58 !!.|||||| ! !|||:::|||:::::: :::|||{!!} 117 b HisPheValThrValSerHisAspGlnValTyrAspSer{Me}++ 41541 : CACTTCGTTACAGTCTCGCatgaccaggtttacgatagt{AT}gt............... : 41496 59 : ron 1 >>>> {e}TyrAspAlaSerTrpTyrAsnAlaAsnArgLysThrGlnLeuLeu : 73 p {:}||||||||| !|||||||||::!!..! !!:!|||||| !||| ++{t}TyrAspAlaValTrpTyrAsnSerThrProArgThrGlnThrLeu 41495 : ..........ag{G}TACGATGCAGTATGGTACAACAGTACGCCAAGAACGCAAACTTTG : 41338 74 : PheValLeuSerIleArgSerCysLeuSerProProIleLeuSerAlaGlyGlyLeuLeu : 93 !:!:!!|||:!!:!:|||!!! !|||!!!||||||:!:|||!!!||||||||||||::: TyrMetLeuAlaLeuArgArgThrLeuThrProProLeuLeuThrAlaGlyGlyLeuIle 41337 : TACATGCTAGCTTTGAGGAGGACTTTAACTCCACCACTGCTCACTGCAGGAGGACtgatt : 41278 94 : AspLeuAsnLeuLysAsnPheAlaGlu >>>> Target Intron 2 >>>> IleI : 104 ...|||||||||:::...|||::!:!! 94 bp |||: SerLeuAsnLeuGluThrPheSerLys++ ++IleL 41277 : tcgttgaatttggaaactttttcGAAGgt.........................agATAT : 41151 105 : leLysAlaSerValSerTyrPheThrValLeuLysSerThr : 117 !!|||.!!|||||||||!::|||||||||:!!||||||||| euLysThrSerValSerTrpPheThrValIleLysSerThr 41150 : TAAAAACTTCTGTTTCCTGGTTCACGGTAATAAAATCGACA : 41110 vulgar: gi|815893599|ref|XP_012249301.1| 24 117 . KQ414772.1 41599 41109 - 259 M 33 99 S 0 2 5 0 2 I 0 113 3 0 2 S 1 1 M 44 132 5 0 2 I 0 90 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 41110 41599 259 - . gene_id 3 ; sequence gi|815893599|ref|XP_012249301.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 41499 41599 . - . KQ414772.1 exonerate:protein2genome:local exon 41499 41599 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 41497 41498 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 41382 41498 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 41382 41383 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 41249 41381 . - . KQ414772.1 exonerate:protein2genome:local exon 41249 41381 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 41247 41248 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 41155 41248 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 41155 41156 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 41110 41154 . - . KQ414772.1 exonerate:protein2genome:local exon 41110 41154 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 41110 41599 259 - . alignment_id 3 ; Query gi|815893599|ref|XP_012249301.1| ; Align 41600 25 99 ; Align 41381 59 132 ; Align 41155 103 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893599|ref|XP_012249301.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 253 Query range: 24 -> 117 Target range: 35844 -> 35193 25 : LysAspSerValPheLeuLeuSerGlnLeuIleHisIleLeuLeuLeuThrValGlnGly : 44 ||| !!!!!!.!||||||:!! !||||||:!!|||:!:|||!!!|||:!!:!!|||||| LysTyrCysAlaPheLeuValValGlnLeuValHisLeuLeuPheLeuSerIleGlnGly 35844 : AAGTATTGCGCTTTCTTGGTGGTGCAACTGGTTCATTTGCTTTTCCTTTCTATCCAGGGA : 35787 45 : GlnPheValLeuAsnSerAsnAspGluIleIleGluSer{Il} >>>> Target Int : 58 !!.||||||:!! !|||:!!||| !! ! !!!:!:!{||} 133 b HisPheValIleLeuSerHisAspMetThrTyrAspAsn{Il}++ 35786 : CACTTTGTTATACTCTCGCATGACATGACTTACGACAAC{AT}gt............... : 35741 59 : ron 1 >>>> {e}TyrAspAlaSerTrpTyrAsnAlaAsnArgLysThrGlnLeuLeu : 73 p {|}|||..!|||!.!|||||||||::!:::! !!:!|||||| !||| ++{e}TyrSerAlaLysTrpTyrAsnSerSerProArgThrGlnThrLeu 35740 : ..........ag{A}TATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAAACTCTG : 35567 74 : PheValLeuSerIleArgSerCysLeuSerProProIleLeuSerAlaGlyGlyLeuLeu : 93 !:!||||||:!!:!:|||!!! !!|||!!!||||||:!:|||!!!||||||||||||:!! TyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGlyLeuIle 35566 : TACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGATT : 35507 94 : AspLeuAsnLeuLysAsnPheAlaGlu >>>> Target Intron 2 >>>> IleI : 104 ..!|||||||||:!!!.!||||||||| 239 bp |||: SerLeuAsnLeuGluThrPheAlaGlu++ ++IleL 35506 : TCCTTGAATTTGGAGACTTTTGCCGAGgt.........................agaTCT : 35235 105 : leLysAlaSerValSerTyrPheThrValLeuLysSerThr : 117 !!|||!.!|||||||||:::|||||||||:!!||||||||| euLysGlySerValSerPhePheThrValMetLysSerThr 35234 : TAAAAGGGtccgtttcctttttcacgGTAATGAAATCGACA : 35194 vulgar: gi|815893599|ref|XP_012249301.1| 24 117 . KQ414772.1 35844 35193 - 253 M 33 99 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 44 132 5 0 2 I 0 235 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 35194 35844 253 - . gene_id 4 ; sequence gi|815893599|ref|XP_012249301.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 35744 35844 . - . KQ414772.1 exonerate:protein2genome:local exon 35744 35844 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 35742 35743 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 35611 35743 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 35611 35612 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 35478 35610 . - . KQ414772.1 exonerate:protein2genome:local exon 35478 35610 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 35476 35477 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 35239 35477 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 35239 35240 . - . intron_id 1 ; splice_site "ag" KQ414772.1 exonerate:protein2genome:local cds 35194 35238 . - . KQ414772.1 exonerate:protein2genome:local exon 35194 35238 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 35194 35844 253 - . alignment_id 4 ; Query gi|815893599|ref|XP_012249301.1| ; Align 35845 25 99 ; Align 35610 59 132 ; Align 35239 103 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893599|ref|XP_012249301.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 193 Query range: 24 -> 103 Target range: 37278 -> 36908 25 : LysAspSerValPheLeuLeuSerGlnLeuIleHisIleLeuLeuLeuThrValGlnGly : 44 ||| !!!!!!.!||||||:!! !||||||:!!|||:!:|||!!!|||:!!:!!|||||| LysTyrCysAlaPheLeuValValGlnLeuValHisLeuLeuPheLeuSerIleGlnGly 37278 : AAGTATTGCGCTTTCTTGGTGGTGCAACTGGTTCATTTGCTTTTCCTTTCTATCCAGGGA : 37221 45 : GlnPheValLeuAsnSerAsnAsp >>>> Target Intron 1 >>>> GluIleI : 55 !!.||||||:!! !|||:!!||| 133 bp |||:!:. HisPheValIleLeuSerHisAsp-+ ++GluLeuP 37220 : CACTTTGTTATACTCTCGCATGACat.........................agGAGTTGT : 37055 56 : leGluSerIleTyrAspAlaSerTrpTyrAsnAlaAsnArgLysThrGlnLeuLeuPheV : 75 !!! !!! !|||..!|||!.!|||||||||::!:::! !!:!|||||| !|||!:!| heValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGlnThrLeuTyrV 37054 : TCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAAACTCTGTACG : 36995 76 : alLeuSerIleArgSerCysLeuSerProProIleLeuSerAlaGlyGlyLeuLeuAspL : 95 |||||:!!:!:|||!!! !!|||!!!||||||:!:|||!!!||||||||||||:!!..!| alLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGlyLeuIleSerL 36994 : TGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGATTTCCT : 36935 96 : euAsnLeuLysAsnPheAlaGluIle : 103 ||||||||:!!!.!|||||||||::: euAsnLeuGluThrPheAlaGluVal 36934 : TGAATTTGGAGACTTTTGCCGaggta : 36909 vulgar: gi|815893599|ref|XP_012249301.1| 24 103 . KQ414772.1 37278 36908 - 193 M 28 84 5 0 2 I 0 129 3 0 2 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 36909 37278 193 - . gene_id 5 ; sequence gi|815893599|ref|XP_012249301.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 37195 37278 . - . KQ414772.1 exonerate:protein2genome:local exon 37195 37278 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 37193 37194 . - . intron_id 1 ; splice_site "AT" KQ414772.1 exonerate:protein2genome:local intron 37062 37194 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 37062 37063 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 36909 37061 . - . KQ414772.1 exonerate:protein2genome:local exon 36909 37061 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 36909 37278 193 - . alignment_id 5 ; Query gi|815893599|ref|XP_012249301.1| ; Align 37279 25 84 ; Align 37062 53 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893599|ref|XP_012249301.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 176 Query range: 16 -> 103 Target range: 45158 -> 44867 17 : SerGluIleSerGlyValLeuIleLysAspSerValPheLeuLeuSerGlnLeuIleHis : 36 !!!||||||||| !! !:!! !!:! !!!..!||||||:!!:!!||| !:!!||| ThrGluIleSerPheAspIleCysArgLeuCysThrPheLeuIleAlaGlnThrValHis 45158 : ACAGAAATTAGCTTCGATATATGCAGATTGTGCACGTTCCTGATCGCACAAACTGTACAC : 45101 37 : IleLeuLeuLeuThrValGlnGlyGlnPheValLeuAsnSerAsnAspGluIleIleGlu : 56 !!:|||!!!||||||:!!|||||||||||||||:!!:!!|||:!!||| !:!: !.!. MetLeuPheLeuThrIleGlnGlyGlnPheValIleAspSerHisAspThrValTyrAsn 45100 : ATGCTGTTTTTGACGATTCAGGGACAGTTCGTGATCGATTCGCATGATACAGTGTACAAT : 45041 57 : SerIleTyr >>>> Target Intron 1 >>>> AspAlaSerTrpTyrAsnAlaA : 67 ! ! 30 bp !!:|||! !||||||!!. ! ValCysMet++ +-GluAlaIleTrpTyrLysMetP 45040 : GTGTGTATGgt.........................acGAGGCAATTTGGTATAAGATGC : 44978 68 : snArgLysThrGlnLeuLeuPheValLeuSerIleArgSerCysLeuSerProProIleL : 87 ! !||| !||||||||| !|||:!!:!!:!!|||!.! !!|||!!!|||||||||| roProLysLeuGlnLeuLeuAspValValAlaLeuArgLysSerLeuThrProProIleL 44977 : CACCTAAACTTCAGTTGCTAGACGTTGTAGCGCTTAGAAAAAGCCTAACTCCTCCTATAC : 44918 88 : euSerAlaGlyGlyLeuLeuAspLeuAsnLeuLysAsnPheAlaGluIle : 103 ||!!!||||||||||||:!! |||:!!|||!!.::!||||||:!!:!: euThrAlaGlyGlyLeuMetArgLeuAspLeuAsnSerPheAlaGlnVal 44917 : TGACGGCGGGAGGGTTGATGCGGTTAGATTTGAATTCTTTCGCACAGGTG : 44868 vulgar: gi|815893599|ref|XP_012249301.1| 16 103 . KQ414772.1 45158 44867 - 176 M 43 129 5 0 2 I 0 26 3 0 2 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 44868 45158 176 - . gene_id 6 ; sequence gi|815893599|ref|XP_012249301.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 45030 45158 . - . KQ414772.1 exonerate:protein2genome:local exon 45030 45158 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 45028 45029 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 45000 45029 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 45000 45001 . - . intron_id 0 ; splice_site "AC" KQ414772.1 exonerate:protein2genome:local cds 44868 44999 . - . KQ414772.1 exonerate:protein2genome:local exon 44868 44999 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 44868 45158 176 - . alignment_id 6 ; Query gi|815893599|ref|XP_012249301.1| ; Align 45159 17 129 ; Align 45000 60 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893599|ref|XP_012249301.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 160 Query range: 28 -> 103 Target range: 17271 -> 16644 29 : PheLeuLeuSerGlnLeuIleHisIleLeuLeuLeuThrValGlnGlyGlnPheValLeu : 48 ||| !|||!!!||||||!!:|||:!:!!!:!!:!!! !:!!|||||||||||||||||| PheThrLeuCysGlnLeuMetHisLeuPheValIleMetLeuGlnGlyGlnPheValLeu 17271 : TTTACGTTGTGTCAACTGATGCACCTGTTCGTTATCATGCTTCAGGGACAGTTCGTGCTG : 17214 49 : Asn{Se} >>>> Target Intron 1 >>>> {r}AsnAspGluIleIleGluSer : 57 :!!{||} 402 bp {|}..!|||!!:! ! ! ||| Asp{Se}++ +-{r}ArgAspAspAsnGluThrSer 17213 : GAT{TC}gt.........................ac{A}CGCGATGATAATGAAACTTCC : 16785 58 : IleTyrAspAlaSerTrpTyrAsnAlaAsnArgLysThrGlnLeuLeuPheValLeuSer : 77 ! !|||!!::!!! !||||||!..::!::! !||||||||| !|||!:!|||:!!:!! ArgTyrGluSerLeuTrpTyrThrSerSerSerLysThrGlnAlaLeuTyrValValAla 16784 : AGATACGAATCATTATGGTACACAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCG : 16725 78 : IleArgSerCysLeuSerProProIleLeuSerAlaGlyGlyLeuLeuAspLeuAsnLeu : 97 :!!|||!!! !|||!!!||| !! !|||!!!||||||||||||:!!.!.||||||:!! LeuArgArgAsnLeuThrProThrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMet 16724 : TTACGAAGAAACCTAACACCTACCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATG : 16665 98 : LysAsnPheAlaGluIle : 103 :!!!:!|||||||||:!! GlnSerPheAlaGluVal 16664 : CAAAGCTTCGCAGAGGTA : 16645 vulgar: gi|815893599|ref|XP_012249301.1| 28 103 . KQ414772.1 17271 16644 - 160 M 21 63 S 0 2 5 0 2 I 0 398 3 0 2 S 1 1 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 16645 17271 160 - . gene_id 7 ; sequence gi|815893599|ref|XP_012249301.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 17207 17271 . - . KQ414772.1 exonerate:protein2genome:local exon 17207 17271 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 17205 17206 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 16805 17206 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 16805 16806 . - . intron_id 0 ; splice_site "AC" KQ414772.1 exonerate:protein2genome:local cds 16645 16804 . - . KQ414772.1 exonerate:protein2genome:local exon 16645 16804 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 16645 17271 160 - . alignment_id 7 ; Query gi|815893599|ref|XP_012249301.1| ; Align 17272 29 63 ; Align 16804 51 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893599|ref|XP_012249301.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 129 Query range: 11 -> 58 Target range: 12846 -> 12705 12 : LysValAlaSerGlnSerGluIleSerGlyValLeuIleLysAspSerValPheLeuLeu : 31 ||| !!.!|||.!.|||||||||!:!!.!! !!!! !||||||!!!..!|||:!!:!! LysGlnValSerAsnSerGluIleAsnAlaGluPheAlaLysAspCysThrPheIleVal 12846 : AAACAGGTGTCGAACTCGGAGATTAATGCGGAGTTTGCCAAGGATTGCACATTTATCGTG : 12789 32 : SerGlnLeuIleHisIleLeuLeuLeuThrValGlnGlyGlnPheValLeuAsnSerAsn : 51 ! !||||||:!!|||||||||! !||||||:!!|||||||||||||||:!!:!!:!!||| IleGlnLeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAspAlaAsn 12788 : ATTCAATTGGTACACATACTTTACCTAACTCTTCAAGGACAATTCGTGATCGACGCGAAC : 12729 52 : AspGluIleIleGluSerIle : 58 !!:||||||.!!||||||!!: GluGluIlePheGluSerMet 12728 : GAGGAAATCTTCGAATCGATG : 12706 vulgar: gi|815893599|ref|XP_012249301.1| 11 58 . KQ414772.1 12846 12705 - 129 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 12706 12846 129 - . gene_id 8 ; sequence gi|815893599|ref|XP_012249301.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 12706 12846 . - . KQ414772.1 exonerate:protein2genome:local exon 12706 12846 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 12706 12846 129 - . alignment_id 8 ; Query gi|815893599|ref|XP_012249301.1| ; Align 12847 12 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893599|ref|XP_012249301.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 257 Query range: 24 -> 117 Target range: 28891 -> 28240 25 : LysAspSerValPheLeuLeuSerGlnLeuIleHisIleLeuLeuLeuThrValGlnGly : 44 ||| !!!!!!.!||||||:!! !||||||:!!|||:!:|||!!!|||:!!:!!|||||| LysTyrCysAlaPheLeuValValGlnLeuValHisLeuLeuPheLeuSerIleGlnGly 28891 : AAGTATTGCGCTTTCTTGGTGGTGCAACTGGTTCATTTGCTTTTCCTTTCTATCCAGGGA : 28834 45 : GlnPheValLeuAsnSerAsnAspGluIleIleGluSer{Il} >>>> Target Int : 58 !!.||||||:!! !|||:!!||| !! ! !!!:!:!{||} 133 b HisPheValIleLeuSerHisAspMetThrTyrAspAsn{Il}++ 28833 : CACTTTGTTATACTCTCGCATGACATGACTTACGACAAC{AT}gt............... : 28788 59 : ron 1 >>>> {e}TyrAspAlaSerTrpTyrAsnAlaAsnArgLysThrGlnLeuLeu : 73 p {|}|||..!|||!.!|||||||||::!:::! !!:!|||||| !||| ++{e}TyrSerAlaLysTrpTyrAsnSerSerProArgThrGlnThrLeu 28787 : ..........ag{A}TATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAAACTCTG : 28614 74 : PheValLeuSerIleArgSerCysLeuSerProProIleLeuSerAlaGlyGlyLeuLeu : 93 !:!||||||:!!:!:|||!!! !!|||!!!||||||:!:|||!!!||||||||||||:!! TyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGlyLeuIle 28613 : TACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGATT : 28554 94 : AspLeuAsnLeuLysAsnPheAlaGlu >>>> Target Intron 2 >>>> IleI : 104 ..!|||||||||:!!!.!||||||||| 239 bp |||: SerLeuAsnLeuGluThrPheAlaGlu++ ++IleL 28553 : TCCTTGAATTTGGAGACTTTTGCCGaggt.........................agaTCT : 28282 105 : leLysAlaSerValSerTyrPheThrValLeuLysSerThr : 117 !!|||||||||||||||:::|||||||||:!!||||||||| euLysAlaSerValSerPhePheThrValMetLysSerThr 28281 : TAAAAGCAtccgtttcctttttcacgGTAATGAAATCGACA : 28241 vulgar: gi|815893599|ref|XP_012249301.1| 24 117 . LHQN01017803.1 28891 28240 - 257 M 33 99 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 44 132 5 0 2 I 0 235 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 28241 28891 257 - . gene_id 1 ; sequence gi|815893599|ref|XP_012249301.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 28791 28891 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28791 28891 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 28789 28790 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 28658 28790 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 28658 28659 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 28525 28657 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28525 28657 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 28523 28524 . - . intron_id 2 ; splice_site "gt" LHQN01017803.1 exonerate:protein2genome:local intron 28286 28524 . - . intron_id 2 LHQN01017803.1 exonerate:protein2genome:local splice3 28286 28287 . - . intron_id 1 ; splice_site "ag" LHQN01017803.1 exonerate:protein2genome:local cds 28241 28285 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28241 28285 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 28241 28891 257 - . alignment_id 1 ; Query gi|815893599|ref|XP_012249301.1| ; Align 28892 25 99 ; Align 28657 59 132 ; Align 28286 103 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893599|ref|XP_012249301.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 218 Query range: 28 -> 117 Target range: 17655 -> 16903 29 : PheLeuLeuSerGlnLeuIleHisIleLeuLeuLeuThrValGlnGlyGlnPheValLeu : 48 ||| !|||!!!||||||!!:|||:!:!!!:!!:!!! !:!!|||||||||||||||||| PheThrLeuCysGlnLeuMetHisLeuPheValIleMetLeuGlnGlyGlnPheValLeu 17655 : TTTACGTTGTGTCAACTGATGCACCTGTTCGTTATCATGCTTCAGGGACAGTTCGTGCTG : 17598 49 : AsnSerAsnAspGluIleIleGluSer{Il} >>>> Target Intron 1 >>>> : 58 :!!||| !!!:..!||| !|||:!!{||} 402 bp AspSerCysGluArgIleHisGluAla{Il}++ ++ 17597 : GATTCGTGCGAGAGAATTCACGAGGCG{AT}gt.........................ag : 17166 59 : {e}TyrAspAlaSerTrpTyrAsnAlaAsnArgLysThrGlnLeuLeuPheValLeuSer : 77 {|}|||!!::!!! !||||||!..::!::! !||||||||| !|||!:!|||:!!:!! {e}TyrGluSerLeuTrpTyrThrSerSerSerLysThrGlnAlaLeuTyrValValAla 17165 : {A}TACGAATCATTATGGTACACAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCG : 17109 78 : IleArgSerCysLeuSerProProIleLeuSerAlaGlyGlyLeuLeuAspLeuAsnLeu : 97 :!!|||!!! !|||!!!||| !! !|||!!!||||||||||||:!!.!.||||||:!! LeuArgArgAsnLeuThrProThrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMet 17108 : TTACGAAGAAACCTAACACCTACCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATG : 17049 98 : LysAsnPheAlaGlu >>>> Target Intron 2 >>>> IleIleLysAlaSerV : 108 :!!!:!||||||||| 83 bp :!::!!||| !|||| GlnSerPheAlaGlu++ ++ValValLysMetSerV 17048 : CAAAGCTTCGCAGAGgt.........................agGTGGTAAAAATGTCCG : 16933 109 : alSerTyrPheThrValLeuLysSerThr : 117 ||||||||!:!||||||||||||!!!||| alSerTyrTyrThrValLeuLysThrThr 16932 : TTTCCTATTATACGGTGTTGAAGACAACG : 16904 vulgar: gi|815893599|ref|XP_012249301.1| 28 117 . LHQN01017803.1 17655 16903 - 218 M 29 87 S 0 2 5 0 2 I 0 398 3 0 2 S 1 1 M 44 132 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 16904 17655 218 - . gene_id 2 ; sequence gi|815893599|ref|XP_012249301.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 17567 17655 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17567 17655 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 17565 17566 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 17165 17566 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 17165 17166 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 17032 17164 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17032 17164 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 17030 17031 . - . intron_id 2 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 16949 17031 . - . intron_id 2 LHQN01017803.1 exonerate:protein2genome:local splice3 16949 16950 . - . intron_id 1 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 16904 16948 . - . LHQN01017803.1 exonerate:protein2genome:local exon 16904 16948 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 16904 17655 218 - . alignment_id 2 ; Query gi|815893599|ref|XP_012249301.1| ; Align 17656 29 87 ; Align 17164 59 132 ; Align 16949 103 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893599|ref|XP_012249301.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 174 Query range: 58 -> 117 Target range: 475 -> 204 59 : TyrAspAlaSerTrpTyrAsnAlaAsnArgLysThrGlnLeuLeuPheValLeuSerIleArgS : 80 ||||||||| !|||||||||::!!..!:!::!:!!|||:!!|||!:!:!!|||:!!:!!|||! TyrAspAlaValTrpTyrAsnSerThrGlnArgSerGlnIleLeuTyrLeuLeuAlaLeuArgA 475 : TACGATGCAGTATGGTACAACAGTACGCAGCGATCGCAAATTTTGTACCTGTTAGCTTTAAGGA : 412 81 : erCysLeuSerProProIleLeuSerAlaGlyGlyLeuLeuAspLeuAsnLeuLysAsnPheAl : 101 !!! !|||!!!||||||:!:||||||||||||||||||:!!...||||||:!!:!!!.!|||:! rgSerLeuThrProProLeuLeuSerAlaGlyGlyLeuIleSerLeuAsnMetGluThrPheSe 411 : GGTCTTTAACTCCACCACTGCTTTCTGCAGGAGGACTGATTTCGTTGAATATGGAAACTTTTTC : 349 102 : aGlu >>>> Target Intron 1 >>>> IleIleLysAlaSerValSerTyrPheThrV : 113 !:!! 94 bp |||:!!|||.!!|||||||||!::||||||| rLys++ ++IleLeuLysThrSerValSerTrpPheThrV 348 : GAAGgt.........................agATATTAAAAACTTCTGTTTCCTGGTTCACGG : 219 114 : alLeuLysSerThr : 117 ||:!!||||||||| alIleLysSerThr 218 : TAATAAAATCGACA : 205 vulgar: gi|815893599|ref|XP_012249301.1| 58 117 . LHQN01017803.1 475 204 - 174 M 44 132 5 0 2 I 0 90 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 205 475 174 - . gene_id 3 ; sequence gi|815893599|ref|XP_012249301.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 344 475 . - . LHQN01017803.1 exonerate:protein2genome:local exon 344 475 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 342 343 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 250 343 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 250 251 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 205 249 . - . LHQN01017803.1 exonerate:protein2genome:local exon 205 249 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 205 475 174 - . alignment_id 3 ; Query gi|815893599|ref|XP_012249301.1| ; Align 476 59 132 ; Align 250 103 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893599|ref|XP_012249301.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 171 Query range: 17 -> 103 Target range: 32999 -> 32711 18 : GluIleSerGlyValLeuIleLysAspSerValPheLeuLeuSerGlnLeuIleHisIle : 37 |||... :::||| ::! !!!..!||||||:!!:!!||| !:!!|||!!: GluPheIlePheLeuLeuCysArgLeuCysThrPheLeuIleAlaGlnThrValHisMet 32999 : gaattcatttttcttctttgcagATTGTGCACGTTCCTGATCGCACAAACTGTACACATG : 32942 38 : LeuLeuLeuThrValGlnGlyGlnPheValLeuAsnSerAsnAspGluIleIleGluSer : 57 |||!!!||||||:!!|||||||||||||||:!!:!!|||:!!||| !:!: !.!. ! LeuPheLeuThrIleGlnGlyGlnPheValIleAspSerHisAspThrValTyrAsnVal 32941 : CTGTTTTTGACGATTCAGGGACAGTTCGTGATCGATTCGCATGATACAGTGTACAATGTG : 32882 58 : IleTyr >>>> Target Intron 1 >>>> AspAlaSerTrpTyrAsnAlaAsnA : 68 ! 30 bp !!:|||! !||||||!!. ! ! CysMet++ +-GluAlaIleTrpTyrLysMetProP 32881 : TGTATGgt.........................acGAGGCAATTTGGTATAAGATGCCAC : 32819 69 : rgLysThrGlnLeuLeuPheValLeuSerIleArgSerCysLeuSerProProIleLeuS : 88 !||| !||||||||| !|||:!!:!!:!!|||!.! !!|||!!!||||||||||||! roLysLeuGlnLeuLeuAspValValAlaLeuArgLysSerLeuThrProProIleLeuT 32818 : CTAAACTTCAGTTGCTAGACGTTGTAGCGCTTAGAAAAAGCCTAACTCCTCCTATACTGA : 32759 89 : erAlaGlyGlyLeuLeuAspLeuAsnLeuLysAsnPheAlaGluIle : 103 !!||||||||||||:!! |||:!!|||!!.::!||||||:!!:!: hrAlaGlyGlyLeuMetArgLeuAspLeuAsnSerPheAlaGlnVal 32758 : CGGCGGGAGGGTTGATGCGGTTAGATTTGAATTCTTTCGCACAGGTG : 32712 vulgar: gi|815893599|ref|XP_012249301.1| 17 103 . LHQN01017803.1 32999 32711 - 171 M 42 126 5 0 2 I 0 26 3 0 2 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 32712 32999 171 - . gene_id 4 ; sequence gi|815893599|ref|XP_012249301.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 32874 32999 . - . LHQN01017803.1 exonerate:protein2genome:local exon 32874 32999 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 32872 32873 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 32844 32873 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 32844 32845 . - . intron_id 0 ; splice_site "AC" LHQN01017803.1 exonerate:protein2genome:local cds 32712 32843 . - . LHQN01017803.1 exonerate:protein2genome:local exon 32712 32843 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 32712 32999 171 - . alignment_id 4 ; Query gi|815893599|ref|XP_012249301.1| ; Align 33000 18 126 ; Align 32844 60 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893599|ref|XP_012249301.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 129 Query range: 11 -> 58 Target range: 12849 -> 12708 12 : LysValAlaSerGlnSerGluIleSerGlyValLeuIleLysAspSerValPheLeuLeu : 31 ||| !!.!|||.!.|||||||||!:!!.!! !!!! !||||||!!!..!|||:!!:!! LysGlnValSerAsnSerGluIleAsnAlaGluPheAlaLysAspCysThrPheIleVal 12849 : AAACAGGTGTCGAACTCGGAGATTAACGCGGAGTTTGCCAAGGATTGCACATTTATCGTG : 12792 32 : SerGlnLeuIleHisIleLeuLeuLeuThrValGlnGlyGlnPheValLeuAsnSerAsn : 51 ! !||||||:!!|||||||||! !||||||:!!|||||||||||||||:!!:!!:!!||| IleGlnLeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAspAlaAsn 12791 : ATTCAATTGGTACACATACTTTACCTAACTCTTCAAGGACAATTCGTGATCGACGCGAAC : 12732 52 : AspGluIleIleGluSerIle : 58 !!:||||||.!!||||||!!: GluGluIlePheGluSerMet 12731 : GAGGAAATCTTCGAATCGATG : 12709 vulgar: gi|815893599|ref|XP_012249301.1| 11 58 . LHQN01017803.1 12849 12708 - 129 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 12709 12849 129 - . gene_id 5 ; sequence gi|815893599|ref|XP_012249301.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 12709 12849 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12709 12849 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 12709 12849 129 - . alignment_id 5 ; Query gi|815893599|ref|XP_012249301.1| ; Align 12850 12 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893711|ref|XP_012249779.1| PREDICTED: odorant receptor 43a [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 185 Query range: 26 -> 115 Target range: 17655 -> 16903 27 : PheLeuLeuAlaGlnLeuValHisIlePhePhePheLeuLeuGlnGlyGlnPheValLeu : 46 ||| !|||..!||||||:!!|||:!:||| !!.!!:!!||||||||||||||||||||| PheThrLeuCysGlnLeuMetHisLeuPheValIleMetLeuGlnGlyGlnPheValLeu 17655 : TTTACGTTGTGTCAACTGATGCACCTGTTCGTTATCATGCTTCAGGGACAGTTCGTGCTG : 17598 47 : AsnAlaAsnAspGluPheAlaGluSer{Il} >>>> Target Intron 1 >>>> : 56 :!!:!! !!!:..!.!! !|||:!!{||} 402 bp AspSerCysGluArgIleHisGluAla{Il}++ ++ 17597 : GATTCGTGCGAGAGAATTCACGAGGCG{AT}gt.........................ag : 17166 57 : {e}TyrAsnThrPheTrpTyrAsnThrAsnThrArgThrLysLeuLeuLeuValLeuVal : 75 {|}|||.!.:!!!!.||||||!..!:!::!:!!!:!|||:!! !|||! !|||:!!!.! {e}TyrGluSerLeuTrpTyrThrSerSerSerLysThrGlnAlaLeuTyrValValAla 17165 : {A}TACGAATCATTATGGTACACAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCG : 17109 76 : LeuArgSerCysSerSerAlaProAsnLeuSerAlaGlyGlyLeuLeuValPheAsnLeu : 95 ||||||!!! ! !!!! !! !! !|||!!!||||||||||||:!! !.!.|||:!! LeuArgArgAsnLeuThrProThrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMet 17108 : TTACGAAGAAACCTAACACCTACCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATG : 17049 96 : LysAsnPheSerGlu >>>> Target Intron 2 >>>> IleLeuLysThrSerP : 106 :!!!:!|||:!!||| 83 bp :!::!!|||! !||| GlnSerPheAlaGlu++ ++ValValLysMetSerV 17048 : CAAAGCTTCGCAGAGgt.........................agGTGGTAAAAATGTCCG : 16933 107 : heSerTyrPheThrValLeuLysThrThr : 115 !!||||||!:!|||||||||||||||||| alSerTyrTyrThrValLeuLysThrThr 16932 : TTTCCTATTATACGGTGTTGAAGACAACG : 16904 vulgar: gi|815893711|ref|XP_012249779.1| 26 115 . LHQN01017803.1 17655 16903 - 185 M 29 87 S 0 2 5 0 2 I 0 398 3 0 2 S 1 1 M 44 132 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 16904 17655 185 - . gene_id 1 ; sequence gi|815893711|ref|XP_012249779.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 17567 17655 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17567 17655 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 17565 17566 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 17165 17566 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 17165 17166 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 17032 17164 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17032 17164 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 17030 17031 . - . intron_id 2 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 16949 17031 . - . intron_id 2 LHQN01017803.1 exonerate:protein2genome:local splice3 16949 16950 . - . intron_id 1 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 16904 16948 . - . LHQN01017803.1 exonerate:protein2genome:local exon 16904 16948 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 16904 17655 185 - . alignment_id 1 ; Query gi|815893711|ref|XP_012249779.1| ; Align 17656 27 87 ; Align 17164 57 132 ; Align 16949 101 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893711|ref|XP_012249779.1| PREDICTED: odorant receptor 43a [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 20 -> 101 Target range: 32984 -> 32711 21 : LeuIleLysAspIleValPheLeuLeuAlaGlnLeuValHisIlePhePhePheLeuLeu : 40 ||| ::! !..!||||||:!!|||||| !||||||!!:.!.|||!!. !:!! LeuCysArgLeuCysThrPheLeuIleAlaGlnThrValHisMetLeuPheLeuThrIle 32984 : ctttgcagATTGTGCACGTTCCTGATCGCACAAACTGTACACATGCTGTTTTTGACGATT : 32927 41 : GlnGlyGlnPheValLeuAsnAlaAsnAspGlu >>>> Target Intron 1 >>>> : 52 |||||||||||||||:!!:!!:!!:!!||| ! 30 bp GlnGlyGlnPheValIleAspSerHisAspThr++ 32926 : CAGGGACAGTTCGTGATCGATTCGCATGATACAgt......................... : 32889 53 : PheAlaGluSerIleTyrAsnThrPheTrpTyrAsnThrAsnThrArgThrLysLeuL : 71 ! :!!! !! !|||.!..!!.!!||||||!!.! ! !!!:! !:!!|||| ++***SerValHisArgTyrGluAlaIleTrpTyrLysMetProProLysLeuGlnLeuL 32888 : agTAATCTGTTCACAGATACGAGGCAATTTGGTATAAGATGCCACCTAAACTTCAGTTGC : 32804 72 : euLeuValLeuValLeuArgSerCysSerSerAlaProAsnLeuSerAlaGlyGlyLeuL : 91 || !|||:!!!.!||||||!.! !! !!!! !!|||! |||!!!||||||||||||: euAspValValAlaLeuArgLysSerLeuThrProProIleLeuThrAlaGlyGlyLeuM 32803 : TAGACGTTGTAGCGCTTAGAAAAAGCCTAACTCCTCCTATACTGACGGCGGGAGGGTTGA : 32744 92 : euValPheAsnLeuLysAsnPheSerGluIle : 101 !! !!!.:!!|||!!.::!|||:!!:!!:!: etArgLeuAspLeuAsnSerPheAlaGlnVal 32743 : TGCGGTTAGATTTGAATTCTTTCGCACAGGTG : 32712 vulgar: gi|815893711|ref|XP_012249779.1| 20 101 . LHQN01017803.1 32984 32711 - 118 M 31 93 5 0 2 I 0 26 3 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 32712 32984 118 - . gene_id 2 ; sequence gi|815893711|ref|XP_012249779.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 32892 32984 . - . LHQN01017803.1 exonerate:protein2genome:local exon 32892 32984 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 32890 32891 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 32862 32891 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 32862 32863 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 32712 32861 . - . LHQN01017803.1 exonerate:protein2genome:local exon 32712 32861 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 32712 32984 118 - . alignment_id 2 ; Query gi|815893711|ref|XP_012249779.1| ; Align 32985 21 93 ; Align 32862 52 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893711|ref|XP_012249779.1| PREDICTED: odorant receptor 43a [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 0 -> 56 Target range: 12876 -> 12708 1 : MetThrThrLeuSerValThrLeuValLysValAlaSerGlnAlaAsnIleSerGlyGln : 20 :!!! !! !|||!!!..!! !:!! !||| !!.!|||.!.:!!.!.|||!:!!.!:!! LeuIleIleLeuArgThrIleValTrpLysGlnValSerAsnSerGluIleAsnAlaGlu 12876 : CTGATCATCCTCAGAACAATTGTTTGGAAACAGGTGTCGAACTCGGAGATTAACGCGGAG : 12819 21 : LeuIleLysAspIleValPheLeuLeuAlaGlnLeuValHisIlePhePhePheLeuLeu : 40 !!! !|||||| !..!|||:!!:!! !|||||||||||||||.!!!:!.!. !||| PheAlaLysAspCysThrPheIleValIleGlnLeuValHisIleLeuTyrLeuThrLeu 12818 : TTTGCCAAGGATTGCACATTTATCGTGATTCAATTGGTACACATACTTTACCTAACTCTT : 12759 41 : GlnGlyGlnPheValLeuAsnAlaAsnAspGluPheAlaGluSerIle : 56 |||||||||||||||:!!:!!||||||!!:|||.!! !||||||!!: GlnGlyGlnPheValIleAspAlaAsnGluGluIlePheGluSerMet 12758 : CAAGGACAATTCGTGATCGACGCGAACGAGGAAATCTTCGAATCGATG : 12709 vulgar: gi|815893711|ref|XP_012249779.1| 0 56 . LHQN01017803.1 12876 12708 - 117 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 12709 12876 117 - . gene_id 3 ; sequence gi|815893711|ref|XP_012249779.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 12709 12876 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12709 12876 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 12709 12876 117 - . alignment_id 3 ; Query gi|815893711|ref|XP_012249779.1| ; Align 12877 1 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893711|ref|XP_012249779.1| PREDICTED: odorant receptor 43a [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 56 -> 101 Target range: 28656 -> 28521 57 : TyrAsnThrPheTrpTyrAsnThrAsnThrArgThrLysLeuLeuLeuValLeuValLeu : 76 |||!:!.!! |||||||||!:!::: !!||||||:!! !|||! !||||||!.!||| TyrSerAlaLysTrpTyrAsnSerSerProArgThrGlnThrLeuTyrValLeuAlaLeu 28656 : TATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAAACTCTGTACGTGCTAGCTTTG : 28599 77 : ArgSerCysSerSerAlaProAsnLeuSerAlaGlyGlyLeuLeuValPheAsnLeuLys : 96 |||!!! !!! !!!! !!||| |||!!!||||||||||||:!! !!!.||||||:!! ArgArgSerLeuThrProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGlu 28598 : AGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGATTTCCTTGAATTTGGAG : 28539 97 : AsnPheSerGluIle : 101 !.!|||:!!|||::: ThrPheAlaGluVal 28538 : ACTTTTGCCGaggta : 28522 vulgar: gi|815893711|ref|XP_012249779.1| 56 101 . LHQN01017803.1 28656 28521 - 111 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 28522 28656 111 - . gene_id 4 ; sequence gi|815893711|ref|XP_012249779.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 28522 28656 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28522 28656 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 28522 28656 111 - . alignment_id 4 ; Query gi|815893711|ref|XP_012249779.1| ; Align 28657 57 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893711|ref|XP_012249779.1| PREDICTED: odorant receptor 43a [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 56 -> 101 Target range: 475 -> 340 57 : TyrAsnThrPheTrpTyrAsnThrAsnThrArgThrLysLeuLeuLeuValLeuValLeuArgS : 78 |||:!!.!! ! |||||||||!:!!.. !|||:!!:!!:!!|||! !:!!|||!.!||||||! TyrAspAlaValTrpTyrAsnSerThrGlnArgSerGlnIleLeuTyrLeuLeuAlaLeuArgA 475 : TACGATGCAGTATGGTACAACAGTACGCAGCGATCGCAAATTTTGTACCTGTTAGCTTTAAGGA : 412 79 : erCysSerSerAlaProAsnLeuSerAlaGlyGlyLeuLeuValPheAsnLeuLysAsnPheSe : 99 !!! !! !!!! !!||| ||||||||||||||||||:!! !!!.|||:!!:!!!.!||||| rgSerLeuThrProProLeuLeuSerAlaGlyGlyLeuIleSerLeuAsnMetGluThrPheSe 411 : GGTCTTTAACTCCACCACTGCTTTCTGCAGGAGGACTGATTTCGTTGAATATGGAAACTTTTTC : 349 100 : rGluIle : 101 |:!!:!! rLysVal 348 : GAAGGTA : 341 vulgar: gi|815893711|ref|XP_012249779.1| 56 101 . LHQN01017803.1 475 340 - 108 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 341 475 108 - . gene_id 5 ; sequence gi|815893711|ref|XP_012249779.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 341 475 . - . LHQN01017803.1 exonerate:protein2genome:local exon 341 475 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 341 475 108 - . alignment_id 5 ; Query gi|815893711|ref|XP_012249779.1| ; Align 476 57 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893327|ref|XP_012238845.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 273 -> 327 Target range: 4395133 -> 4395298 274 : TyrValValTyrValMetLeuHisLeuPheLeuTyrCysTyrMetGlyGluLysLe : 292 |||:!!..!! :!! !:!!!!.|||!!.|||!::|||!:: ||||||! || TyrLeuThrSerMetGlyValGlnLeuLeuLeuTrpCysTrpProGlyGluIleLe 4395134 : TATTTAACCTCGATGGGGGTGCAACTTTTGCTATGGTGTTGGCCTGGTGAAATTCT : 4395188 293 : uThrSerGluSerThrGluIleAlaAspThrValTyr<->AsnAlaGluTrpTyrA : 310 |..!..!|||||| !||||||!.! !!..!|||||| ||| ! !||||||| uValGlnGluSerLeuGluIleGlyHisValValTyrLeuAsnIleProTrpTyrA 4395189 : CGTTCAAGAGAGTTTAGAAATAGGTCATGTAGTCTATCTAAATATACCATGGTACA : 4395245 311 : snLeuProProLysAsnAlaArgTrpLeuIleIleIleMetCysArgAlaArg : 327 |||||||||||! !! !!:! ||| !:!:!!:!!: !||||||!:! snLeuProProIleTyrGlnLysGlnLeuCysLeuMetIleIleArgAlaGln 4395246 : ATTTACCACCGATTTATCAGAAACAACTTTGCCTGATGATCATTAGGGCCCAA : 4395298 vulgar: gi|815893327|ref|XP_012238845.1| 273 327 . KQ414784.1 4395133 4395298 + 101 M 31 93 G 0 3 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4395134 4395298 101 + . gene_id 1 ; sequence gi|815893327|ref|XP_012238845.1| ; gene_orientation . KQ414784.1 exonerate:protein2genome:local cds 4395134 4395298 . + . KQ414784.1 exonerate:protein2genome:local exon 4395134 4395298 . + . insertions 3 ; deletions 0 KQ414784.1 exonerate:protein2genome:local similarity 4395134 4395298 101 + . alignment_id 1 ; Query gi|815893327|ref|XP_012238845.1| ; Align 4395134 274 93 ; Align 4395230 305 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893327|ref|XP_012238845.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 578 Query range: 0 -> 224 Target range: 44221 -> 45144 1 : MetValCysPheAlaCysAlaProGlnThrIleAsnLeuLeuLeuIleAlaGlyAsnSer : 20 ||| !! !|||!.!|||!.!||||||||||||||||||! !!!!||| !|||:!!! ! MetPheLeuPheValCysValProGlnThrIleAsnLeuSerPheIleTrpGlyAspPhe 44222 : ATGTTTCTCTTCGTTTGTGTCCCACAAACGATCAATCTTTCATTCATCTGGGGTGATTTT : 44279 21 : AsnLeuValIleGluAsnLeuSerThr<->AsnIleThrThrThrIleSerLeuMetLys : 39 |||||||||:!!||||||||||||! ! |||||||||! !||||||||||||:!!||| AsnLeuValValGluAsnLeuSerMetGlyAsnIleThrIleThrIleSerLeuLeuLys 44280 : AATTTAGTGGTAGAGAATCTATCCATGGGTAACATAACAATCACTATTTCCCTTCTGAAG : 44339 40 : AlaMetAlaValTrpIleLysGlyLys{H} >>>> Target Intron 1 >>>> { : 49 .!!!!:||| !!||||||!!.||||||{!} 248 bp { ThrIleAlaPheTrpIleAsnGlyLys{G}++ +-{ 44340 : ACCATCGCTTTTTGGATCAACGGCAAA{C}gt.........................aa{ : 44618 50 : is}PheAsnCysGlnThrLysTrpThrLeuLysThrTyrSerIleCysHisPheLeuLeu : 68 !.} ::: !.!! !||||||!! !!!! ! !!||||||||| ln}AsnIleIleLysLysLeuProAsnArgLysThr***CysAsnArgHisPheLeuHis 44619 : aa}aatattattaagaaattgcCTAATCGTAAGACATAATGTAACCGTCactttcttcat : 44674 69 : LeuGlnAlaLeuLysPheLeuValLysCysMetAlaAsnAspTrpAsnThrThrThrAsp : 88 ...||||||||||||! !|||:!!||||||||||||:!!||||||!:!|||..!:!! ! PheGlnAlaLeuLysSerLeuLeuLysCysMetAlaAspAspTrpSerThrValSerLys 44675 : ttccaaGCACTGAAATCTCTGCTGAAATGCATGGCCGACGATTGGAGCACAGTATCGAAA : 44734 89 : LysAlaGluArgGluThrMetValAsnIleArgArgIleThrArgLysThrThrIleArg : 108 |||! !!!:! !!!:|||||| !|||||| !||||||||||||||||||! !|||!!! LysAspAspLeuAspThrMetSerAsnIleAlaArgIleThrArgLysThrIleIleSer 44735 : AAAGATGATCTAGACACCATGAGTAACATCGCAAGGATCACCAGAAAGACTATAATAAGC : 44794 109 : SerThrLeuMetAlaAsnIleValLeuLeuAlaPheValProAlaArgLeuPheSerMet : 128 ||||||:!!:!:..!:!!||||||:!!:!!.!!!:!:!! ! !|||!!!.!!!!!! ! SerThrValLeuCysHisIleValValIleThrTyrIlePheLeuArgPheLeuThrArg 44795 : AGCACAGTGTTATGTCACATTGTGGTCATCACTTATATATTTCTACGATTCCTCACCAGG : 44854 129 : ArgTyrSerAspAsnMetLeuPheTyrArgGlyTyrPheProTyrAsnIleThrIleSer : 148 !:!||||||! !!.!! |||.!!!:!|||!.!||||||||||||:!!! ! !:!!||| LysTyrSerGlyThrArgLeuLeuPheArgAlaTyrPheProTyrAspSerAspValSer 44855 : AAGTACAGCGGCACCAGACTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGT : 44914 149 : ProAsnTyrGluLeuThrMetIleGlyGlnPheMetAlaThrPheTyrAlaAlaThrThr : 168 ||||||||||||!!!|||:!!|||!.!|||.!!!!:|||.!!|||||||||||||||||| ProAsnTyrGluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThr 44915 : CCAAATTACGAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACA : 44974 169 : TyrThrAlaValAspThrPheValValLeuLeuIlePheHisValCysGlyGlnLeuSer : 188 |||||||||||||||||||||:!!|||:!!||||||.!.||||||||||||||||||||| TyrThrAlaValAspThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeuSer 44975 : TACACAGCCGTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCG : 45034 189 : AsnLeuArgAspAspLeuArgLysIleHisSerTyrAspLysLysAspLeuGluLysLys : 208 |||||||||:!!!!:!!! !!|||:!!!!.:!!! !|||||| ! |||:!! !||| AsnLeuArgAsnGluPheGlyLysLeuGlnAlaCysAspLysValThrLeuGlnAlaLys 45035 : AATTTGAGAAACGAATTCGGTAAGCTTCAAGCATGCGATAAAGTAACATTACAGGCGAAG : 45094 209 : LeuGlnLysIleIleGlnLysHisGluTyrIleSerArgPheAlaAsn : 224 ||| !||||||:!:|||||||||||||||:!!!:!||||||!.!::: LeuGlyLysIleValGlnLysHisGluTyrLeuAsnArgPheValSer 45095 : TTGGGGAAAATCGTGCAGAAACACGAATATCTTAACAGGTTCGTATCA : 45144 vulgar: gi|815893327|ref|XP_012238845.1| 0 224 . KQ414804.1 44221 45144 + 578 M 29 87 G 0 3 M 19 57 S 0 1 5 0 2 I 0 244 3 0 2 S 1 2 M 175 525 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44222 45144 578 + . gene_id 1 ; sequence gi|815893327|ref|XP_012238845.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 44222 44369 . + . KQ414804.1 exonerate:protein2genome:local exon 44222 44369 . + . insertions 3 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 44370 44371 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 44370 44617 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 44616 44617 . + . intron_id 0 ; splice_site "aa" KQ414804.1 exonerate:protein2genome:local cds 44618 45144 . + . KQ414804.1 exonerate:protein2genome:local exon 44618 45144 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44222 45144 578 + . alignment_id 1 ; Query gi|815893327|ref|XP_012238845.1| ; Align 44222 1 87 ; Align 44312 30 57 ; Align 44620 50 525 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893327|ref|XP_012238845.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 400 Query range: 220 -> 350 Target range: 51506 -> 52053 221 : ArgPheAlaAsnLysIleGluAsnSerPheAsnMetMetLeuLeuLeuGlnMetLeuSer : 240 |||||||||.!.! !||||||..!!!!||||||||||||||||||:!!|||||||||.!! ArgPheAlaGluThrIleGluArgCysPheAsnMetMetLeuLeuIleGlnMetLeuGly 51507 : AGGTTCGCAGAAACGATAGAGCGTTGTTTCAATATGATGCTTCTGATTCAGATGCTCGGT : 51564 241 : CysThrIleGlnIleCysSerGlnSerTyrGlnValIleMet >>>> Target Intr : 255 ||||||:!!|||:!!|||! !|||!!!!:!|||!.!:!!||| 100 bp CysThrValGlnLeuCysPheGlnCysPheGlnAlaValMet++ 51565 : TGTACCGTTCAGCTATGCTTCCAGTGTTTCCAAGCAGTCATGgt................ : 51611 256 : on 1 >>>> SerPheGlyGluGlnGluMetGluTyrMetIleLeuGlnLeuSerPheL : 271 |||.!!! !|||:!! ! ||| !!||||||...|||::: |||| ++SerIleAspGluGluIleAspGluAsnMetIlePheGlnIleLeuPheL 51612 : .........agTCAATTGACGAGGAAATAGATGAAAACAtgattttccaaattctctTTT : 51757 272 : euLeuIleTyrValValTyrValMetLeuHisLeuPheLeuTyrCysTyrMetGlyGluL : 291 |||||.!!|||||||||||||||||||||!!.||||||||||||||||||:!!||||||! euLeuPheTyrValValTyrValMetLeuGlnLeuPheLeuTyrCysTyrValGlyGluA 51758 : TGCTGTTCTACGTGGTTTACGTGATGCTACAATTATTCTTGTATTGTTACGTGGGTGAAA : 51817 292 : ysLeuThrSerGlu >>>> Target Intron 2 >>>> SerThrGluIleAlaAs : 301 :!|||:!! !||| 60 bp |||..!|||||||||:! rgLeuSerValGlu++ ++SerValGluIleAlaAs 51818 : GGCTTTCCGTTGAGgt.........................agAGCGTTGAAATAGCTAA : 51907 302 : pThrValTyrAsnAlaGluTrpTyrAsnLeuProProLysAsnAlaArgTrpLeuIleIl : 321 !.!!!.!|||:!!:!!||||||||||||||| !!||||||||||||!:!! !|||:!!|| nAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLysAsnAlaLysLeuLeuLeuIl 51908 : CGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTGCTACTAAT : 51967 322 : eIleMetCysArgAlaArgAlaSerProLeuLysIleThrAlaGlyLysPheCysSerPh : 341 ||||||| ! ||||||||| ! ||||||:!!||||||||||||!:!|||..!!!!|| eIleMetArgArgAlaArgLeu---ProLeuGlnIleThrAlaGlyArgPheAlaThrPh 51968 : TATCATGCGACGAGCCAGGTTA---CCTCTACAAATCACTGCAGGTAGATTTGCTACTTT : 52024 342 : eThrLeuValLeuPheSerGlnValSer : 350 |||||||:!!|||!:!|||||||||||| eThrLeuMetLeuTyrSerGlnValSer 52025 : CACTCTGATGCTGTATTCACAGGTaagt : 52053 vulgar: gi|815893327|ref|XP_012238845.1| 220 350 . KQ414804.1 51506 52053 + 400 M 34 102 5 0 2 I 0 96 3 0 2 M 41 123 5 0 2 I 0 56 3 0 2 M 33 99 G 1 0 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51507 52053 400 + . gene_id 2 ; sequence gi|815893327|ref|XP_012238845.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51507 51608 . + . KQ414804.1 exonerate:protein2genome:local exon 51507 51608 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51609 51610 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51609 51708 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51707 51708 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 51709 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51709 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 1 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52053 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52053 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 51507 52053 400 + . alignment_id 2 ; Query gi|815893327|ref|XP_012238845.1| ; Align 51507 221 102 ; Align 51709 255 123 ; Align 51892 296 99 ; Align 51991 330 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893327|ref|XP_012238845.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 256 Query range: 220 -> 350 Target range: 33631 -> 34546 221 : ArgPheAlaAsnLysIleGluAsnSerPheAsnMetMetLeuLeuLeuGlnMetLeuSer : 240 |||||||||!.!! !||||||:!!!!!||||||! :!!||||||:!!||||||||| ! ArgPheAlaThrMetIleGluAspCysPheAsnThrLeuLeuLeuIleGlnMetLeuLeu 33632 : aGGTTCGCAACTATGATCGAGGATTGTTTCAACACATTGCTATTAATTCAGATGCTGCTC : 33689 241 : CysThrIleGlnIleCysSerGlnSerTyrGlnValIleMet >>>> Target Intr : 255 ||||||:!!:!!||||||! !|||.!!!:! ! !!.!! 74 bp CysThrValGluIleCysPheGlnGlyPheLeuPhePheAsp++ 33690 : TGTACCGTCGAAATATGCTTTCAAGGCTTTTTATTCTTCGATgt................ : 33736 256 : on 1 >>>> SerPheGlyGluGlnGluMetGluTyrMetIleLeuGlnLeuSerPheL : 271 !.!. !|||.!.|||! ! ! .!.! !:!!|||||| !|||! ++ValIleLeuGluAsnGluLysGlyIlePheAsnValGlnLeuLeuPheP 33737 : .........agGTGATACTAGAAAACGAGAAAGGAATATTCAACGTGCAATTGCTTTTCT : 33856 272 : euLeuIleTyrValValTyrValMetLeuHisLeuPheLeuTyrCysTyrMetGlyGluL : 291 !!:!!:!:!:!||| !!:!:!!:!::!!|||:!!!:!:!!|||||||||!!:||||||! heValLeuPheValCysPheIleLeuValHisIleTyrIleTyrCysTyrIleGlyGluM 33857 : TCGTGCTGTTCGTATGCTTCATCCTTGTACACATCTACATTTATTGTTACATAGGAGAGA : 33916 292 : ysLeuThrSerGlu >>>> Target Intron 2 >>>> SerThrGluIleAlaAs : 301 !||| !!!!.!. 454 bp |||! !|||!!:::!:! etLeuLeuThrHis+- ++SerArgGluMetSerAs 33917 : TGCTACTCACACATgc.........................agAGCAGAGAAATGAGCAA : 34400 302 : pThrValTyrAsnAlaGluTrpTyrAsnLeuProProLysAsnAlaArgTrpLeuIleIl : 321 !:!!!.!|||.!.:!!.!.|||||||||:!! !!||| !.!.|||!:!!! |||:!!.! nSerAlaTyrGluSerAsnTrpTyrAsnValSerProProGluAlaLysCysLeuLeuPh 34401 : TTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCAGAAGCCAAGTGCCTTTTATT : 34460 322 : eIleMetCysArgAlaArgAlaSerProLeuLysIleThrAlaGlyLysPheCysSerPh : 341 !|||||| !|||.!! ||| !!|||||| :!:||||||||||||||| !!!!!|| eIleMetHisArgThr---AlaArgProLeuCysLeuThrAlaGlyLysPheSerThrPh 34461 : TATCATGCACAGAACC---GCTCGTCCACTTTGCTTGACTGCAGGAAAATTCAGTACCTT : 34517 342 : eThrLeuValLeuPheSerGlnValSer : 350 |:!!:!!! !:!!|||||| |||||| eSerMetGluMetPheSerThrValSer 34518 : CTCCATGGAAATGTTCAGTACTGTAAGC : 34546 vulgar: gi|815893327|ref|XP_012238845.1| 220 350 . KQ414804.1 33631 34546 + 256 M 34 102 5 0 2 I 0 70 3 0 2 M 41 123 5 0 2 I 0 450 3 0 2 M 31 93 G 1 0 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33632 34546 256 + . gene_id 3 ; sequence gi|815893327|ref|XP_012238845.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33632 33733 . + . KQ414804.1 exonerate:protein2genome:local exon 33632 33733 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33734 33735 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 33734 33807 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 33806 33807 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 33808 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33808 33930 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 2 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 1 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34546 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34546 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 33632 34546 256 + . alignment_id 3 ; Query gi|815893327|ref|XP_012238845.1| ; Align 33632 221 102 ; Align 33808 255 123 ; Align 34385 296 93 ; Align 34478 328 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893327|ref|XP_012238845.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 140 -> 211 Target range: 36782 -> 36995 141 : PheProTyrAsnIleThrIleSerProAsnTyrGluLeuThrMetIleGlyGlnPheMet : 160 |||||||||:!!! !.!! !|||||||||||||||:!!||| !:!!|||||||||:!! PheProTyrAspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheVal 36783 : TTTCCATACGACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTG : 36840 161 : AlaThrPheTyrAlaAlaThrThrTyrThrAlaValAspThrPheValValLeuLeuIle : 180 !.!||| ! ! ::!|||! ! !|||:!!..! !!||||||||||||!.!:!!|||:!: GlyThrValLeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuVal 36841 : GGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTG : 36900 181 : PheHisValCysGlyGlnLeuSerAsnLeuArgAspAspLeuArgLysIleHisSerTyr : 200 !!.|||:!!||||||||||||!!! !|||||| !! !|||..!!!.:!! !!:! LeuHisIleCysGlyGlnLeuThrValLeuArgIleAlaLeuGluAsnLeuAlaAsnThr 36901 : TTACACATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTCGAGAATCTTGCTAACACG : 36960 201 : AspLysLysAspLeuGluLysLysLeuGlnLys : 211 ! !|||||| ! ! !..|||!!!|||:!! ThrIleLysAspAsnTyrSerLysPheGlnGlu 36961 : ACAATAAAAGACAACTACAGCAAGTTCCAAGAA : 36995 vulgar: gi|815893327|ref|XP_012238845.1| 140 211 . KQ414804.1 36782 36995 + 167 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36783 36995 167 + . gene_id 4 ; sequence gi|815893327|ref|XP_012238845.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36783 36995 . + . KQ414804.1 exonerate:protein2genome:local exon 36783 36995 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36783 36995 167 + . alignment_id 4 ; Query gi|815893327|ref|XP_012238845.1| ; Align 36783 141 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893327|ref|XP_012238845.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 130 -> 203 Target range: 31320 -> 31539 131 : SerAspAsnMetLeuPheTyrArgGlyTyrPheProTyrAsnIleThrIleSerProAsn : 150 ..!|||..!:!!|||.!.|||! !||||||||||||!:!:!!||| ! !! ! ! GlnAspArgLeuLeuLeuTyrProGlyTyrPheProPheAspIleArgProIleGlyVal 31321 : CAGGATCGTCTGCTCCTGTACCCTGGCTATTTTCCCTTCGATATTCGTCCAATAGGGGTA : 31378 151 : TyrGluLeuThrMetIleGlyGlnPheMetAlaThrPheTyrAlaAlaThrThrTyrThr : 170 !! !|||! .!!|||||| ! :!:|||.!!!:!! !|||!.!! !!:!|||||| LeuLeuSerThrAsnPheGlyGlnValLeuAlaAlaTyrSerAlaValIleSerTyrThr 31379 : CTACTGTCGACCAATTTTGGCCAAGTGCTCGCAGCGTATTCCGCTGTTATCAGTTACACC : 31438 171 : AlaValAspThrPheValValLeuLeuIlePheHisValCysGlyGlnLeuSerAsnLeu : 190 .!!||||||||||||:!!!.!:!!||||||.!.|||:!!|||||||||!!!..!! ||| ThrValAspThrPheIleAlaMetLeuIleMetHisIleCysGlyGlnPheGluIleLeu 31439 : ACCGTGGATACATTTATCGCGATGCTGATAATGCACATATGCGGACAATTTGAGATACTG : 31498 191 : ArgAspAspLeuArgLysIleHisSerTyrAspLysLys : 203 |||.!. ! ||||||!:!:!: ..! !!!!:|||||| ArgGlnLysLeuArgArgLeuMetAspAspGluLysLys 31499 : AGACAGAAATTACGAAGGCTGATGGATGACGAGAAGAAG : 31539 vulgar: gi|815893327|ref|XP_012238845.1| 130 203 . KQ414804.1 31320 31539 + 160 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31321 31539 160 + . gene_id 5 ; sequence gi|815893327|ref|XP_012238845.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31321 31539 . + . KQ414804.1 exonerate:protein2genome:local exon 31321 31539 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 31321 31539 160 + . alignment_id 5 ; Query gi|815893327|ref|XP_012238845.1| ; Align 31321 131 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893327|ref|XP_012238845.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 295 -> 350 Target range: 39965 -> 40127 296 : SerThrGluIleAlaAspThrValTyrAsnAlaGluTrpTyrAsnLeuProProLysAsn : 315 ||||||! !|||!.!.!.:!!!.!|||:!!..!.!.||||||:!!||||||||||||:!! SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 316 : AlaArgTrpLeuIleIleIleMetCysArgAlaArgAlaSerProLeuLysIleThrAla : 335 ||| !! !|||:!!|||:!:!!:|||||||||!:!!.!||| !!!:!!||||||||| AlaValSerLeuValIleValIleCysArgAlaGlnValSer---PheGlnIleThrAla 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCC---TTTCAAATAACCGCT : 40080 336 : GlyLysPheCysSerPheThrLeuValLeuPheSerGlnValSer : 350 ||||||||| !! !!|||:!!|||! !||||||!:! |||||| GlyLysPheSerProPheSerLeuGluLeuPheAsnAlaValSer 40081 : GGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTGTGAGT : 40127 vulgar: gi|815893327|ref|XP_012238845.1| 295 350 . KQ414804.1 39965 40127 + 137 M 34 102 G 1 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40127 137 + . gene_id 6 ; sequence gi|815893327|ref|XP_012238845.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39966 40127 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40127 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 39966 40127 137 + . alignment_id 6 ; Query gi|815893327|ref|XP_012238845.1| ; Align 39966 296 102 ; Align 40068 331 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893327|ref|XP_012238845.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 217 -> 295 Target range: 37559 -> 37928 218 : TyrIleSerArgPheAlaAsnLysIleGluAsnSerPheAsnMetMetLeuLeuLeuGln : 237 :::......|||::!||| ! !:!:|||:!!!!!||||||!!:|||||||||:!!||| PhePheLysArgTyrAlaValIleValGluAspCysPheAsnIleMetLeuLeuValGln 37560 : ttttttaaaaggtaCGCTGTGATAGTGGAAGATTGCTTCAACATCATGCTGCTCGTTCAA : 37617 238 : MetLeuSerCysThrIleGlnIleCysSerGlnSerTyrGlnVal >>>> Target I : 253 ! |||! !|||||| !..!:!!|||! ! .!!|||!:::!! 135 ThrLeuMetCysThrAlaMetLeuCysMetThrGlyTyrArgMet-+ 37618 : ACTTTAATGTGCACCGCCATGCTCTGTATGACTGGATATCGCATGat............. : 37667 254 : ntron 1 >>>> IleMetSerPheGlyGluGlnGluMetGluTyrMetIleLeuGlnL : 268 bp :!! !||| !!..!:!!:!!:!! !!!: !|||:!! : --Leu***SerValAsnGlnGluGlnGluAspValProIleIleGlyV 37668 : ............taTTATAGTCTGTTAATCAGGAGCAAGAGGATGTACCGATTATTggag : 37845 269 : euSerPheLeuLeuIleTyrValValTyrValMetLeuHisLeuPheLeuTyrCysTyrM : 288 :: |||...::: :!!|||..!|||..!|||||||||||||||:::|||||||||: alIlePhePheIleSerHisValThrTyrThrMetLeuHisLeuPheIleTyrCysTyrV 37846 : taatattttttatctcaCACGTGACCTATACCATGTTAcatctatttatttattgctacg : 37905 289 : etGlyGluLysLeuThrSerGlu : 295 :!||||||! !||| !.!!:!! alGlyGluThrLeuLeuGlyGln 37906 : tGGGCGAAACACTTCTTGGACAA : 37928 vulgar: gi|815893327|ref|XP_012238845.1| 217 295 . KQ414804.1 37559 37928 + 133 M 35 105 5 0 2 I 0 131 3 0 2 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 37560 37928 133 + . gene_id 7 ; sequence gi|815893327|ref|XP_012238845.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 37560 37664 . + . KQ414804.1 exonerate:protein2genome:local exon 37560 37664 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 37665 37666 . + . intron_id 1 ; splice_site "AT" KQ414804.1 exonerate:protein2genome:local intron 37665 37799 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 37798 37799 . + . intron_id 0 ; splice_site "TA" KQ414804.1 exonerate:protein2genome:local cds 37800 37928 . + . KQ414804.1 exonerate:protein2genome:local exon 37800 37928 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 37560 37928 133 + . alignment_id 7 ; Query gi|815893327|ref|XP_012238845.1| ; Align 37560 218 105 ; Align 37800 253 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893599|ref|XP_012249301.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 58 -> 116 Target range: 1228545 -> 1228296 59 : TyrAspAlaSerTrpTyrAsnAlaAsnArgLysThrGlnLeuLeuPheValLeuSe : 77 |||..!:!!!!!||||||!!.!.!::: !||| !|||! !:!!.!! !:!!! TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 78 : rIleArgSerCysLeuSerProProIleLeuSerAlaGlyGlyLeuLeuAspLeuA : 96 ! !! !!!!..!|||!.!||| !||||||!!!||||||||||||! !!!::!!| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 97 : snLeuLysAsnPheAlaGlu >>>> Target Intron 1 >>>> IleIleL : 105 ||:!!:!!|||||||||.!. 75 bp ! !.!!| snMetGluAsnPheAlaAsn++ ++ThrPheL 1228433 : ACATGGAGAACTTTGCAAACgt.........................agACATTCA : 1228332 106 : ysAlaSerValSerTyrPheThrValLeuLysSer : 116 ||.!!!!!:!!||||||||||||:!!|||! !||| ysThrCysMetSerTyrPheThrMetLeuMetSer 1228331 : AAACGTGCATGTCGTACTTCACAATGCTGATGTCA : 1228297 vulgar: gi|815893599|ref|XP_012249301.1| 58 116 . KQ414851.1 1228545 1228296 - 109 M 44 132 5 0 2 I 0 71 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228297 1228545 109 - . gene_id 1 ; sequence gi|815893599|ref|XP_012249301.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1228414 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228414 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228412 1228413 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1228339 1228413 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1228339 1228340 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228297 1228338 . - . KQ414851.1 exonerate:protein2genome:local exon 1228297 1228338 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228297 1228545 109 - . alignment_id 1 ; Query gi|815893599|ref|XP_012249301.1| ; Align 1228546 59 132 ; Align 1228339 103 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893599|ref|XP_012249301.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 58 -> 116 Target range: 1233381 -> 1233132 59 : TyrAspAlaSerTrpTyrAsnAlaAsnArgLysThrGlnLeuLeuPheValLeuSe : 77 |||..!:!!!!!||||||!!.!.! !||| !|||! !:!!.!! ! !! TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMe 1233381 : TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGAT : 1233327 78 : rIleArgSerCysLeuSerProProIleLeuSerAlaGlyGlyLeuLeuAspLeuA : 96 ! !! !!!!..!|||!.!||| !:!!|||!!!||||||||||||! !!!::!!| tGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetA 1233326 : GCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGA : 1233270 97 : snLeuLysAsnPheAlaGlu >>>> Target Intron 1 >>>> IleIleL : 105 ||:!!:!!|||||||||.!. 75 bp !.!!| snMetGluAsnPheAlaAsn++ ++ThrPheL 1233269 : ACATGGAGAACTTTGCAAACgt.........................agaCATTCA : 1233168 106 : ysAlaSerValSerTyrPheThrValLeuLysSer : 116 ||.!!!!!:!!||||||||||||:!!|||! !||| ysThrCysMetSerTyrPheThrMetLeuMetSer 1233167 : AAACGTGCATGTCATACTTCACAATGCTGATGTCA : 1233133 vulgar: gi|815893599|ref|XP_012249301.1| 58 116 . KQ414851.1 1233381 1233132 - 103 M 44 132 5 0 2 I 0 71 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233133 1233381 103 - . gene_id 2 ; sequence gi|815893599|ref|XP_012249301.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233250 1233381 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233381 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233133 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233133 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233133 1233381 103 - . alignment_id 2 ; Query gi|815893599|ref|XP_012249301.1| ; Align 1233382 59 132 ; Align 1233175 103 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893327|ref|XP_012238845.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 292 -> 354 Target range: 234979 -> 235162 293 : ThrSerGluSerThrGluIleAlaAspThrValTyrAsnAlaGluTrpTyrAsnLeuP : 312 |||..!:!!!!!|||:!!:!!!.!!!:! !||||||! .!!|||||||||...|||| ThrGlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuP 234980 : ACTCAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTAC : 235037 313 : roProLysAsnAlaArgTrpLeuIleIleIleMetCysArgAlaArgAlaSerProLe : 331 ||! !|||!.!|||! ! ! |||:!!!!:|||!!:! !|||:!! ::!! ! !:! roHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSer---SerMetValIl 235038 : CTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCG---AGCATGGTGAT : 235091 332 : uLysIleThrAlaGlyLysPheCysSerPheThrLeuValLeuPheSerGlnValSer : 350 !||||||||||||||||||||| ..!.!.:!!:!!!.! !|||.!!.!.|||||| eLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspValSer 235092 : AAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTGAGT : 235148 351 : ValAspGluSer : 354 :!!:!!:!:::: IleAsnLysThr 235149 : ATTAATAAgaca : 235162 vulgar: gi|815893327|ref|XP_012238845.1| 292 354 . KQ414889.1 234979 235162 + 117 M 34 102 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234980 235162 117 + . gene_id 1 ; sequence gi|815893327|ref|XP_012238845.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234980 235162 . + . KQ414889.1 exonerate:protein2genome:local exon 234980 235162 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 234980 235162 117 + . alignment_id 1 ; Query gi|815893327|ref|XP_012238845.1| ; Align 234980 293 102 ; Align 235082 328 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893327|ref|XP_012238845.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 290 -> 349 Target range: 292377 -> 292551 291 : LysLeuThrSerGluSerThrGluIleAlaAspThrValTyrAsnAlaGluTrpTyrA : 310 ::!:!! !! !:!!.!!!:!||||||||| !!.!! !|||:!!.!!|||||||||| ArgValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrA 292378 : CGAGTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACA : 292435 311 : snLeuProProLysAsnAlaArgTrpLeuIleIleIleMetCysArgAlaArgAlaSe : 329 |||||||| !::!!!.|||||| :!!:!!:!::!::!:..!! !.!!!:! snLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLys---Hi 292436 : ATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAA---CA : 292489 330 : rProLeuLysIleThrAlaGlyLysPheCysSerPheThrLeuValLeuPheSerGln : 348 !|||:!!|||:!!||||||||||||.!.! ! !.!!:!!||| ! !|||.!! sProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAla 292490 : TCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCT : 292546 349 : Val : 349 ||| Val 292547 : GTA : 292551 vulgar: gi|815893327|ref|XP_012238845.1| 290 349 . KQ414889.1 292377 292551 + 100 M 37 111 G 1 0 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292378 292551 100 + . gene_id 2 ; sequence gi|815893327|ref|XP_012238845.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292378 292551 . + . KQ414889.1 exonerate:protein2genome:local exon 292378 292551 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 292378 292551 100 + . alignment_id 2 ; Query gi|815893327|ref|XP_012238845.1| ; Align 292378 291 111 ; Align 292489 329 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893761|ref|XP_012249992.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1439 Query range: 2 -> 391 Target range: 204197 -> 207607 3 : AsnIleSerAlaLeuThrLysAlaGluGluAspMetLysTyrAlaThrArgPheValL : 22 !!.!!:|||!.!:!!.!!!:!||||||||||||:!!!:!||||||||||||||||||| LysMetSerGlyIleAlaArgAlaGluGluAspLeuArgTyrAlaThrArgPheValL 204198 : AAAATGTCTGGAATCGCGAGGGCAGAAGAGGACCTGAGATACGCGACACGTTTCGTGA : 204255 23 : ysProIleLeuGlyValValGlyAlaTrpProValSerSerSerSerSerSerPheSe : 41 ||||||||||||||:!!|||||||||||||||:!! !! !!:!|||||| !!|||!! ysProIleLeuGlyIleValGlyAlaTrpProIleProValAsnSerSerProPheTh 204256 : AGCCGATTTTAGGGATAGTCGGTGCGTGGCCGATTCCAGTGAACTCCTCTCCGTTCAC : 204312 42 : rLysIleLeuThrArgIleGluHisIleLeuThrTyrPheLeuPheLeuLeuLeuMet : 60 !!:!:!!:!! !||||||||||||:!!:!!|||||||||||||||...|||:!!!!: rArgLeuValArgArgIleGluHisValValThrTyrPheLeuPhePheLeuMetIle 204313 : GAGGCTAGTACGGCGAATAGAACACGTAGTCACCtatttcctcttctttctgaTGATC : 204369 61 : ValProThrLeuMetHisValPheLeuLysGluThrAsnAsnLysIleArgLeuLysL : 80 |||||| !|||:!!:!!|||||||||||||||! !|||..!|||||||||||||||: ValProGlyLeuLeuTyrValPheLeuLysGluLysAsnGlyLysIleArgLeuLysI 204370 : GTACCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGA : 204429 81 : euMetGlyProIleIleAsnCysSerMetGlnPheCysAlaTyrThrIleLeuLeuCy : 99 !!:!:|||||||||:!:|||||||||!!:||||||! ! !|||:!!:!!:!!|||! leLeuGlyProIleValAsnCysSerIleGlnPhePheLysTyrSerValIleLeuTy 204430 : TTCTCGGGCCGATCGTGAACTGCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTA : 204486 100 : sArgAlaAsnGluIleGlnAsnGlyLeuAsnValIleLysGlnAspTrpIleThrAla : 118 !||| !:!!:!!||||||!!..!!||||||..!|||!:!!::||||||||| !||| rArgIleAspLysIleGlnLysSerLeuAsnThrIleArgArgAspTrpIleGluAla 204487 : CCGGATCGACAAAATTCAGAAGAGTTTGAACACCATCAGACGCGACTGGATAGAGGCT : 204543 119 : ThrGluGluAsnArgLeuIlePheArgSerLysAlaLysIleAlaArgArgValValL : 138 |||!!:||||||||||||||||||||||||||||||||||||!.!|||||||||:!!| ThrAspGluAsnArgLeuIlePheArgSerLysAlaLysIleGlyArgArgValLeuL 204544 : ACGGATGAAAATCGGTTGATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGC : 204603 139 : euThrValAlaIleThrMetTyrGlyGlyGlyLeuCysTyrArgThrValLeuProLe : 157 ||! !!.!||| !|||||||||||||||||||||||||||||||||:!!|||||||| euIleAlaAlaAlaThrMetTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLe 204604 : TGATTGCAGCCGCCACTATGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTT : 204660 158 : uLeuLysGlyThrIleValThrProGlyAsnValThrIleArgProLeuProCysPro : 176 ||||!:!||||||||||||||||||! !|||||||||||||||||||||||||||||| uLeuArgGlyThrIleValThrProAspAsnValThrIleArgProLeuProCysPro 204661 : GTTGAGAGGAACGATCGTAACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCG : 204717 177 : SerTyrPheValIleLeuAspGluGlnLysSerProAsnTyrGluIleLeuPheValL : 196 !|||||||||......:::||||||:::||||||||||||||||||:!!|||:!!| ValTyrPheValPhePheAsnGluGlnArgSerProAsnTyrGluIleValPheIleL 204718 : GTTtactttgttttctttaacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATAC : 204777 197 : euGlnValMetAlaGlyPheValIleTyrAlaValIleSerGlySerCysGlyLeuSe : 215 |||||:!!|||||||||||||||! !||||||||||||||||||!!!||||||:!!!! euGlnIleMetAlaGlyPheValThrTyrAlaValIleSerGlyThrCysGlyMetCy 204778 : TGCAAATTATGGCTGGTTTTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTG : 204834 216 : rAlaLeuPheValLeuHisAlaCysSerMetLeuSerIleLeuValAspLysMetLys : 234 !|||||||||||||||||||||||||||||||||!!!|||||||||:!!||||||!!. sAlaLeuPheValLeuHisAlaCysSerMetLeuArgIleLeuValAsnLysMetAsn 204835 : CGCGCTGTTCGTTCTCCACGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAAC : 204891 235 : AlaLeuValAspThrArgAspMetSerAspThrMetValGlnArgArgIleMetAspI : 254 ||||||||||||! ! !||||||!!!!!:|||:!:|||!!.|||!:!||| |||| AlaLeuValAspLysAlaAspMetThrGluThrLeuValHisArgLysIleAlaAspI 204892 : GCACTTGTGGATAAGGCGGACATGACCGAGACACTTGTGCACAGGAAGATCGCTGATA : 204951 255 : leValGluHisGlnThrLysIleLys{Gl} >>>> Target Intron 1 >>>> : 263 ||||||||:!!|||||||||||||||{ !} 905 bp leValGluTyrGlnThrLysIleLys{Ar}++ + 204952 : TTGTTGAATATCAGACGAAGATAAAG{AG}gt.........................a : 205883 264 : {y}PheLeuLysAsnIleGluThrIleThrGlnTyrValCysLeuSerGluMetIle : 281 {!}|||||||||||||||||||||||||||:!!|||:!!||||||!!!||||||:!: +{g}PheLeuLysAsnIleGluThrIleThrGluTyrIleCysLeuThrGluMetVal 205884 : g{A}TTTTTAAAGAACATTGAAACAATTACAGAGTACATTTGTTTAACCGAAATGGTG : 205937 282 : CysGlyThrSerLeu >>>> Target Intron 2 >>>> GluTrpGluAsnAs : 291 !!||||||.!!||| 96 bp |||||||||||||| GlyGlyThrGlyLeu++ ++GluTrpGluAsnAs 205938 : GGCGGTACGGGTCTAgt.........................agGAATGGGAGAACAA : 206063 292 : nAsnAlaThrAlaValLeuIleTyrSerThrIleGlnIleSerCysThrPheSerVal : 310 ||||.!!|||||||||:!!:!:|||! !|||:!:||||||||||||||||||!!!||| nAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerCysThrPheCysVal 206064 : TAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTTGTACATTCTGCGTT : 206120 311 : PheIleLeuCysTyrIleGlyGlnLeuLeuValAspGlu >>>> Target Intro : 324 ||||||||||||||||||||||||||||||:!!|||:!! 81 bp PheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206121 : TTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt................. : 206164 325 : n 3 >>>> AsnArgIleValGlyGlnAlaSerTyrMetIleAsnTrpTyrTyrLeu : 339 |||!.!:!!|||||| !.!!|||! !! !:!:||||||||| !||| ++AsnHisValValGlyLeuThrSerCysThrValAsnTrpTyrArgLeu 206165 : ........agAACCACGTCGTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTT : 206288 340 : SerArgLysHisMetArgSerLeuIleLeuIleIleAlaMetSerAsnTyrProMetL : 359 !!!.!!:!||| !||||||:!!||||||||||||||||||||||||||||||!!:| ProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSerAsnTyrProIleL 206289 : CCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTCTAATTACCCAATAA : 206348 360 : ysLeuMetAlaGlyLysMetValGluMetSerLeuAlaThrPheThrAsp >>>> T : 376 |||||! |||||||||||| !!|||||||||||||||!:!||||||||| ysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPheThrAsp++ 206349 : AATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTCACCGATgt...... : 206401 377 : arget Intron 4 >>>> ValMetLysMetSerMetGlyTyrLeuAsnIleLeuA : 388 1161 bp |||||||||:!!:!!|||||||||!!!|||||||||| ++ValMetLysValAlaMetGlyTyrPheAsnIleLeuA 206402 : ...................agGTAATGAAGGTGGCGATGGGATACTTCAACATACTCC : 207596 389 : rgAsnValIle : 391 ||.!.|||:!! rgGluValVal 207597 : GTGAAGTCGTA : 207607 vulgar: gi|815893761|ref|XP_012249992.1| 2 391 . KQ414889.1 204197 207607 + 1439 M 260 780 S 0 2 5 0 2 I 0 901 3 0 2 S 1 1 M 23 69 5 0 2 I 0 92 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 52 156 5 0 2 I 0 1157 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204198 207607 1439 + . gene_id 1 ; sequence gi|815893761|ref|XP_012249992.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 204198 204979 . + . KQ414889.1 exonerate:protein2genome:local exon 204198 204979 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 204980 204981 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 204980 205884 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 205883 205884 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 205885 205954 . + . KQ414889.1 exonerate:protein2genome:local exon 205885 205954 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 205955 205956 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 205955 206050 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 206049 206050 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206398 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206398 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206399 206400 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206399 207559 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 207558 207559 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 207560 207607 . + . KQ414889.1 exonerate:protein2genome:local exon 207560 207607 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 204198 207607 1439 + . alignment_id 1 ; Query gi|815893761|ref|XP_012249992.1| ; Align 204198 3 780 ; Align 205886 264 69 ; Align 206051 287 111 ; Align 206243 324 156 ; Align 207560 376 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893761|ref|XP_012249992.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 502 Query range: 10 -> 376 Target range: 217159 -> 219671 11 : GluGluAspMetLysTyrAlaThrArgPheValLysProIleLeuGlyValValGlyA : 30 |||:::::::::... ::!! !!:!!:: !::: !:!:||| ! !:!!||| GluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyL 217160 : gagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTC : 217217 31 : laTrpProValSerSerSerSerSerSerPheSerLysIleLeuThrArgIleGluHi : 49 !|||||| !||| !!!!!!!!!!!!!!! ! !!||||||||| !!:!:!: !:! euTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAs 217218 : TTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAA : 217274 50 : sIleLeuThrTyrPheLeuPheLeuLeuLeuMetValProThrLeuMetHisValPhe : 68 ! !||| !||| !|||.!. !!!!|||.!.|||||| !! !|||:!!|||||| nAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPhe 217275 : CGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTC : 217331 69 : LeuLysGluThrAsnAsnLysIleArgLeuLysLeuMetGlyProIleIleAsnCysS : 88 |||:!!! !:!! ! ! !!:!|||||||||.!.||||||:!:||| !||| LeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysV 217332 : CTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCG : 217391 89 : erMetGlnPheCysAlaTyrThrIleLeuLeuCysArgAlaAsnGluIleGlnAsnGl : 107 !||| !||| ! !||| ! !|||:!! !!.! ! !!:|||!::.!. ! alMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCy 217392 : TGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTG : 217448 108 : yLeuAsnValIleLysGlnAspTrpIleThrAla<->ThrGluGluAsnArgLeuIle : 125 !:!!!.. !|||:!!!:!||||||! !.!!.! !|||:!!:!!||| ! sValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArgGluAla 217449 : CGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCG : 217505 126 : PheArgSerLysAlaLysIleAlaArgArgValValLeuThrValAlaIleThrMetT : 145 .!.! ! !!!.|||!!..!!!.!|||!:!:!!|||||| ! !.!!.!! !|||| MetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetT 217506 : ATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGT : 217565 146 : yrGlyGlyGlyLeuCysTyrArgThrValLeuProLeuLeuLysGlyThrIleValTh : 164 ||.!!||| ::: ||| !!.!:!!|||:!! ! !|||! !|||:!!:! yrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSe 217566 : ACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATC : 217622 165 : rPro<->GlyAsnValThrIleArgProLeuProCysProSerTyrPheValIleLeu : 182 ! ! ||||||:!!|||.!!! !|||||| !! !|||! ! !|||:!! rGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyrIleIle 217623 : GGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATC : 217679 183 : AspGluGlnLysSerProAsnTyrGluIleLeuPheValLeuGlnValMetAlaGlyP : 202 ||| !:: ! !!!|||!.. !!||||||:!!||| !!||||||:!!!!:|||||| AspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyA 217680 : GATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAG : 217739 203 : heValIleTyrAlaValIleSerGlySerCysGlyLeuSerAlaLeuPheValLeuHi : 221 !:!!!!::!!!.!:!!! |||!.!:!!|||.!!|||:!!||| !|||!.!:!!|| laLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHi 217740 : CTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCA : 217796 222 : sAlaCysSerMetLeuSerIleLeuValAspLysMetLysAlaLeuValAspThrArg : 240 |||||||.!!..!:!!..!:!:|||:!!:!! !:!!:!! !|||:!!||| !||| sAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArg 217797 : TGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGA : 217853 241 : AspMetSerAspThrMetValGlnArgArgIleMetAspIleValGluHisGlnThrL : 260 ! ! !..! !! |||.!. !!|||||| !..!||||||...!!.!!...!: AlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnHisValA 217854 : GCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTC : 217913 261 : ysIleLysGlyPheLeuLysAsnIleGluThrIle{Th} >>>> Target Intro : 272 :!||| ! !! !:!!!:! ! |||! ! !{ } 1335 bp rgIleLeuLysCysValArg***IleValGlyGlu{**}-+ 217914 : GGATATTAAAGTGTGTAAGATAGATCGTTGGTGAA{TG}ct................. : 217953 273 : n 1 >>>> {r}GlnTyrValCysLeuSerGluMetIleCysGlyThrSerLeuGlu : 287 {!}:::|||::: :::::: ... !||| ++{*}LysTyrIleTyrValAsnLeuTyrLysPheGluTyrGln***Glu 217954 : ........ag{a}aaatatatttacgttaatttgtataaatttgaatatcaatAGGAA : 219329 288 : TrpGluAsnAsnAsnAlaThrAlaValLeuIleTyrSerThrIleGlnIleSerCysT : 307 |||:!!:::|||:!!!.!|||::!!.!:!!! !|||! !! !:!!! |||||| | TrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerLeuT 219330 : TGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCCTca : 219389 308 : hrPheSerValPheIleLeuCysTyrIleGlyGlnLeuLeuValAspGlu >>>> T : 324 |||||::::::||||||...||||||||||||:!!:!!:!!!.!!!::!: hrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln++ 219390 : ctttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAggt...... : 219442 325 : arget Intron 2 >>>> AsnArgIleValGlyGlnAlaSerTyrMetIleAsnT : 336 73 bp ||| :::|||::: ||||||||||||.!.| ++CysArgLysIleGlyGluMetSerTyrMetIleGluT 219443 : ...................agTGtaggaaaattggagaaatgtCGTACATGATCGAAT : 219549 337 : rpTyrTyrLeuSerArgLysHisMetArgSerLeuIleLeuIleIleAlaMetSerAs : 355 ||||| |||!!! !!||| ! ! !! !!!! !:!!|||! !|||||||||||||| rpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaMetSerAs 219550 : GGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTATGTCGAA : 219606 356 : nTyrProMetLysLeuMetAlaGlyLysMetValGluMetSerLeuAlaThrPheThr : 374 |! ! !!!!:||||||! ||||||!!.|||||||||:!!|||:!!::!||||||||| nSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPheThr 219607 : TTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCACTTTTACC : 219663 375 : AspVal : 376 |||||| AspVal 219664 : GACGTG : 219671 vulgar: gi|815893761|ref|XP_012249992.1| 10 376 . KQ414889.1 217159 219671 + 502 M 108 324 G 0 3 M 47 141 G 0 3 M 106 318 S 0 2 5 0 2 I 0 1331 3 0 2 S 1 1 M 51 153 5 0 2 I 0 69 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217160 219671 502 + . gene_id 2 ; sequence gi|815893761|ref|XP_012249992.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217160 217950 . + . KQ414889.1 exonerate:protein2genome:local exon 217160 217950 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217951 217952 . + . intron_id 1 ; splice_site "CT" KQ414889.1 exonerate:protein2genome:local intron 217951 219285 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219284 219285 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219286 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219286 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217160 219671 502 + . alignment_id 2 ; Query gi|815893761|ref|XP_012249992.1| ; Align 217160 11 324 ; Align 217487 119 141 ; Align 217631 166 318 ; Align 219287 273 153 ; Align 219513 324 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893761|ref|XP_012249992.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 483 Query range: 10 -> 389 Target range: 284508 -> 287261 11 : GluGluAspMetLysTyrAlaThrArgPheValLysProIleLeuGlyValValGlyA : 30 !!: !||| !! !|||::!..!!:!.!. !::: !.!!||| ! !:!!|||! AspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyV 284509 : GACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCG : 284566 31 : laTrpProValSerSerSerSerSerSerPheSerLysIleLeuThrArgIleGluHi : 49 .!||||||:!!||| !!!! !!!!!!!!!...!|||||| !:!! !:!! alTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAl 284567 : TATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGC : 284623 50 : sIleLeuThrTyrPheLeuPheLeuLeuLeuMetValProThrLeuMetHisValPhe : 68 :!!:!!!:!! !||||||.!. !!!!|||:!!|||||| ! !:!! !..! ! aLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrVal 284624 : GTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTG : 284680 69 : LeuLysGluThrAsnAsn<->LysIleArgLeuLysLeuMetGlyProIleIleAsnC : 87 ||| ! :!!|||..!:!! ! ! !:!:!!|||:!!!!:||||||:!:! ! !| LeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheC 284681 : CTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCT : 284740 88 : ysSerMetGlnPheCysAlaTyrThrIleLeuLeuCysArgAlaAsnGluIleGlnAs : 106 ||! !||| ! ! !||| !||||||:!!! |||!.!..!:!!||| .! ysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGl 284741 : GCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCA : 284797 107 : nGlyLeuAsnValIleLysGlnAspTrpIleThr{Al} >>>> Target Intron : 118 . !!:!!!!.! !|||::: !|||||| ! !{.!} 1015 bp nCysValLysAspIleArgAlaAspTrpSerLeu{Th}+- 284798 : ATGCGTGAAGGACATTCGTGCGGACTGGTCTCTC{AC}gc.................. : 284837 119 : 1 >>>> {a}ThrGluGluAsnArgLeuIlePheArgSerLysAlaLysIleAlaA : 134 {!} ||||||...||| |||.!.|||..!!..|||!:!|||!.!| ++{r}GlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyA 284838 : .......ag{t}caagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGAC : 285896 135 : rgArgValValLeuThrValAlaIleThrMetTyrGlyGlyGlyLeuCysTyrArgTh : 153 || !:!!!.!:!! ! !||| ! !||||||..!||||||!!!! !|||! !|| rgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrTh 285897 : GATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCAC : 285953 154 : rValLeuProLeuLeuLysGlyThrIleValThrProGlyAsnValThrIleArgPro : 172 ||||:!!||||||! !! !! ! !! ! !! ! !! !|||! !|||:!:||| !! rValMetProLeuCysThrValArgThrGluIleIleAspAsnGluThrValArgSer 285954 : GGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCT : 286010 173 : LeuProCysProSerTyrPheValIleLeuAspGluGlnLysSerProAsnTyrGluI : 192 ! ! !!! !|||! !||| !! !:!!|||||| !!::! ||||||:::!:!|||| GlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluI 286011 : CAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGA : 286070 193 : leLeuPheValLeuGlnValMetAlaGlyPheValIleTyrAlaValIleSerGlySe : 211 ||:!! !!:!!||| !:!!|||!.!||||||||||||:!!|||! ! !|||:! leValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAl 286071 : TCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGC : 286127 212 : rCysGlyLeuSerAlaLeuPheValLeuHisAlaCysSerMetLeuSerIleLeuVal : 230 !|||.!!|||:!!|||:!!||||||:!!|||!.!|||.!!...!!!!!!||||||||| aCysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuVal 286128 : TTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTG : 286184 231 : AspLysMetLysAlaLeuValAsp<-><->ThrArgAspMetSerAspThrMetValG : 248 |||:!! ! !||||||||| ! ! !! ! !.!! !:!! ! !: ThrLysLeuAspLysLeuValAspGlyValLysGlyArgLysGlyLeuSerThrHisG 286185 : ACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATG : 286244 249 : lnArgArgIleMetAspIleValGluHisGlnThrLysIleLys{Gl} >>>> Tar : 263 !!!:!|||:!: ||||||:!!||||||!!. !|||||| !{||} luGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 286245 : AACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt........ : 286293 264 : get Intron 2 >>>> {y}<->PheLeuLysAsnIleGluThrIleThrGlnTyr : 274 515 bp {|} !||| !! !.!.|||:!!! ! ! ++{y}AspAspLeuCysTyrTyrHisThrValMetAlaIle 286294 : .................ag{A}GACGACTTGTGTTATTACCATACTGTAATGGCAATA : 286840 275 : ValCysLeuSerGluMetIleCysGlyThrSerLeuGluTrpGluAsnAsnAsnAlaT : 294 :!!...!!! ! ! ! ..!..!! !! !|||||||||.!.!:!.!..!!! IleAlaPheValMetTyrSerLeuSerValPhe***GluTrpGluGlnSerGluThrI 286841 : ATTGCATTCGTCATGTACTCGTTGTCAGTTTTCTAGGAATGGGAGCAAAGTGAAACTA : 286900 295 : hrAlaValLeuIleTyrSerThrIleGlnIleSerCysThrPheSerValPheIleLe : 313 !!.!..!:!!! |||!!!|||:!:! !:!!|||! !||||||!:!||||||||||| leGlyThrIleThrTyrCysThrLeuLeuValSerPheThrPheAsnValPheIleLe 286901 : TAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACT : 286957 314 : uCysTyrIleGlyGlnLeuLeuValAspGlu >>>> Target Intron 3 >>>> : 324 |||||||||||||:!!:!!||| !!!:::: 74 bp uCysTyrIleGlyGluIleLeuSerGluGln++ 286958 : CTGTTACATCGGTGAAATTCTCTCCGAACaggt......................... : 286992 325 : AsnArgIleValGlyGlnAlaSerTyrMetIleAsnTrpTyrTyrLeuSerArgLy : 342 ! !! !|||||| !:!!!!!|||||||||:!!|||||| !||| !! !!|| ++CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLy 286993 : agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAA : 287118 343 : sHisMetArgSerLeuIleLeuIleIleAlaMetSerAsnTyrProMetLysLeuMet : 361 | !:!.!!||||||||||||.!!|||:!!||||||! ! !!!!:||||||! sThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThr 287119 : AACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACA : 287175 362 : AlaGlyLysMetValGluMetSerLeuAlaThrPheThrAspValMetLysMetSerM : 381 |||||||||!!::!!!!::!:||||||::!!:!||| !..!|||! ! !!:!:!: AlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnL 287176 : GCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATT : 287235 382 : etGlyTyrLeuAsnIleLeuArgAsn : 389 !:..!|||! !:!!:!:! ||| euSerTyrTyrHisLeuTyrAspAsn 287236 : TATCCTATTATCATTTGTacgataat : 287261 vulgar: gi|815893761|ref|XP_012249992.1| 10 389 . KQ414889.1 284508 287261 + 483 M 64 192 G 0 3 M 43 129 S 0 2 5 0 2 I 0 1011 3 0 2 S 1 1 M 120 360 G 0 6 M 24 72 S 0 2 5 0 2 I 0 511 3 0 2 S 1 1 G 0 3 M 60 180 5 0 2 I 0 70 3 0 2 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284509 287261 483 + . gene_id 3 ; sequence gi|815893761|ref|XP_012249992.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284509 284834 . + . KQ414889.1 exonerate:protein2genome:local exon 284509 284834 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284835 284836 . + . intron_id 1 ; splice_site "GC" KQ414889.1 exonerate:protein2genome:local intron 284835 285849 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285848 285849 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 285850 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285850 286290 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286805 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286804 286805 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286806 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286806 286989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287261 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287261 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284509 287261 483 + . alignment_id 3 ; Query gi|815893761|ref|XP_012249992.1| ; Align 284509 11 192 ; Align 284704 75 129 ; Align 285851 119 360 ; Align 286217 239 72 ; Align 286810 264 180 ; Align 287064 324 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893761|ref|XP_012249992.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 459 Query range: 8 -> 376 Target range: 232438 -> 235147 9 : LysAlaGluGluAspMetLysTyrAlaThrArgPheValLysProIleLeuGlyValV : 28 !!.||| !..!||| :!!|||::!! !!:! ! !::: !.!!||| ! !: AsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProM 232439 : AACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGA : 232496 29 : alGlyAlaTrpProValSerSerSerSerSerSerPheSerLysIleLeuThrArgIl : 47 !!|||||||||||| ! !!!!..!!!!|||!!! !..!:!!:!!|||.!!!:!:! etGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLe 232497 : TGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACT : 232553 48 : eGluHisIleLeuThrTyrPheLeuPheLeuLeuLeuMetValProThrLeuMetHis : 66 : !...:!! ! !:!!! !|||.!.:!!! !! !!!:|||||| !:!!:!! ! uLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPhe 232554 : GTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTC : 232610 67 : ValPheLeuLysGluThrAsnAsnLysIleArgLeuLysLeuMetGlyProIleIleA : 86 :!!.!.!!!:!!!!:|||!:! :!! !|||:!!|||! !!!:||||||!!:! !: IleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerH 232611 : ATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTC : 232670 87 : snCysSerMetGlnPheCysAlaTyrThrIleLeuLeuCysArgAlaAsnGluIleGl : 105 !!! ! !||| ! !||| ! !||||||...!:!||||||!!:|||! isPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLe 232671 : ACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCT : 232727 106 : nAsnGlyLeuAsnValIleLysGlnAspTrpIleThrAlaThrGluGlu<->AsnArg : 123 !! !!:!!.!. !:!:|||||||||||| !!.!!.!! !:!! :!!||| uTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArg 232728 : CTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGT : 232784 124 : LeuIlePheArgSerLysAlaLysIleAlaArgArgValValLeuThrValAlaIleT : 143 !:!:.!. !!.!!!.||||||:!!!.!||| !:!!!.!! !! !!.!|||.!! AspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheC 232785 : GATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTT : 232844 144 : hrMetTyrGlyGlyGlyLeuCysTyrArgThrValLeuProLeuLeuLysGlyThrIl : 162 !|||:!! !|||! ! !! ! !!..!! !||| ! !|||! !! !.!!|||.! ysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPh 232845 : GCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTT : 232901 163 : e<->ValThrProGlyAsnValThrIleArgProLeuProCysProSerTyrPheVal : 180 ! ||| ! !! !!:! !:!!!!: !|||||||||||| !!! !||| ! eTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLys 232902 : CTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAG : 232958 181 : IleLeuAspGluGlnLysSerProAsnTyrGluIleLeuPheValLeuGlnValMetA : 200 :!::!!||| ::! ||||||!.. !!||||||:!!|||||||||||| !:!:: LeuMetAspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuS 232959 : CTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCT : 233018 201 : laGlyPheValIleTyrAlaValIleSerGlySerCysGlyLeuSerAlaLeuPheVa : 219 !!||||||:!!:!: !!:!!|||! ! !|||:!!|||||||||.!!|||:!!.!.!. erGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAl 233019 : CCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGC : 233075 220 : lLeuHisAlaCysSerMetLeuSerIleLeuValAspLysMetLysAlaLeuValAsp : 238 !:!!|||||||||.!!..!|||!:!:!::!!:!!...|||:!! ! ! !||||||||| aMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAsp 233076 : GATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGAC : 233132 239 : ThrArgAspMetSerAspThrMetValGlnArgArgIleMetAspIleValGluHisG : 258 .!!!:!! ..!..!!!:! !:!:!.!||||||!:!:!! !||||||||||||! AlaLysGlyGlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisH 233133 : GCGAAAGGGCAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATC : 233192 259 : lnThrLysIleLysGlyPheLeuLysAsnIleGluThrIleThrGlnTyrValCysLe : 277 !. !:::! ! ! !!!:!|||... ! !:!.!!!.! ! ! !||| isLeuArgThrLeuArgTyrLeuSerValArgCysSerPheAsnValGlnTyrCys-- 233193 : ATTTGCGTACATTAAGGTATTTGTCTGTGCGTTGTAGTTTCAATGTGCAATACTGT-- : 233249 278 : uSerGluMetIleCysGlyThrSerLeuGluTrpGlu >>>> Target Intron : 290 :!!|||:!!! !! !!..! ! !...|||... 1528 bp -AlaGluLeuLys***ArgValValArgSerTrpArg++ 233250 : -GCAGAGCTGAAGTGAAGAGTTGTGAGAAGTTGGCGTgt................... : 233287 291 : 1 >>>> AsnAsnAsnAlaThrAlaValLeuIleTyrSerThrIleGlnIleSerCy : 306 .!.!!.::: ::: ! !||| !! !:!: ! :!:||| ++GluLysSerLysGluLysLeuAlaSerTyrValIleValTyrValSerMe 233288 : ......agGAAAAgtcgaaggaaaaattagCTTCATACGTCATCGTGTACGTGTCCAT : 234861 307 : sThrPheSerValPheIleLeuCysTyrIleGlyGlnLeuLeuValAspGlu >>>> : 324 ||||||::::::||||||...||||||||||||:!! !|||..!!!::!! tThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGln++ 234862 : GACATTtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGCAGgt.... : 234917 325 : Target Intron 2 >>>> AsnArgIleValGlyGlnAlaSerTyrMetIleAs : 335 74 bp !! !! !||||||:!! ! !||||||! !.! ++CysThrLysValGlyGluLysValTyrMetThrGl 234918 : .....................agTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGA : 235022 336 : nTrpTyrTyrLeuSerArgLysHisMetArgSerLeuIleLeuIleIleAlaMetSer : 354 .|||||| ||| !!!.!||| ! ! !.!!|||:!!:!!||||||:!!! !||| uTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSer 235023 : ATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCG : 235079 355 : AsnTyrProMetLysLeuMetAlaGlyLysMetValGluMetSerLeuAlaThrPheT : 374 !:! !!!:|||:!!! |||||||||.!.:!!:!!||||||:!!||||||||| SerMetValIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheG 235080 : AGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTG : 235139 375 : hrAspVal : 376 !|||||| lyAspVal 235140 : GCGATGTG : 235147 vulgar: gi|815893761|ref|XP_012249992.1| 8 376 . KQ414889.1 232438 235147 + 459 M 113 339 G 0 3 M 41 123 G 0 3 M 114 342 G 1 0 M 12 36 5 0 2 I 0 1524 3 0 2 M 34 102 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232439 235147 459 + . gene_id 4 ; sequence gi|815893761|ref|XP_012249992.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232439 233284 . + . KQ414889.1 exonerate:protein2genome:local exon 232439 233284 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233285 233286 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233285 234812 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232439 235147 459 + . alignment_id 4 ; Query gi|815893761|ref|XP_012249992.1| ; Align 232439 9 339 ; Align 232781 122 123 ; Align 232907 163 342 ; Align 233249 278 36 ; Align 234813 290 102 ; Align 234989 324 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893761|ref|XP_012249992.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 331 Query range: 10 -> 268 Target range: 221363 -> 222143 11 : GluGluAspMetLysTyrAlaThrArgPheValLysProIleLeuGlyValValGlyA : 30 :!! !:!!:!!|||! ::!..!!:!!!. !::: !|||||| ! !:!!|||! LysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleGlyV 221364 : AAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTG : 221421 31 : laTrpProValSerSerSerSerSerSerPheSerLysIleLeuThrArgIleGluHi : 49 .!|||||| !|||:!!!:!! !|||!!! ! ..!!:! !||| ! !!:!: !:! alTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLeuIleAs 221422 : TTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAA : 221478 50 : sIleLeuThrTyrPheLeuPheLeuLeuLeuMetValProThrLeuMetHisValPhe : 68 !:!!:!! !||| !|||.!! !!!!|||:!!|||||| ! !:!::!!|||.!! nValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyrValIle 221479 : CGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATC : 221535 69 : LeuLysGluThrAsnAsnLysIleArgLeuLysLeuMetGlyProIleIleAsnCysS : 88 |||:!!! ! !:!! ! ! ! !|||:!!||||||:!!||||||:!:! ! !||| LeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysV 221536 : CTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCG : 221595 89 : erMetGlnPheCysAlaTyrThrIleLeuLeuCysArgAlaAsnGluIleGlnAsnGl : 107 !||| !||| !||| !:!:|||:!! ! !! !|||!!:|||!::.!. ! alMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCy 221596 : TGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTG : 221652 108 : yLeuAsnValIleLysGlnAspTrpIleThrAlaThr<->GluGluAsnArgLeuIle : 125 !:!!.!. !|||:!! !||||||! !.! !||| ...:!!:!!!:! !||| sIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLysAspIle 221653 : CATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAGGATATA : 221709 126 : PheArgSerLysAlaLysIleAlaArgArgValValLeuThrValAlaIleThrMetT : 145 .!.! !..!!!.|||! .!!!.!||||||:!!:!!:!!! ! !.!!.!! !|||| MetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheMetT 221710 : ATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGT : 221769 146 : yrGlyGlyGlyLeuCysTyrArgThrValLeuProLeuLeuLysGlyThrIleValTh : 164 ||.!!||| ::: ||| !!.!:!!|||!!! ! !|||! !||| !.! yrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIleProAl 221770 : ACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGC : 221826 165 : rProGly<->AsnValThrIleArgProLeuProCysProSerTyrPheValIleLeu : 182 !! !! ! |||||||||... |||:!! !! !|||! !! !!|||:!! aGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPheIleVal 221827 : GCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTC : 221883 183 : AspGluGlnLysSerProAsnTyrGluIleLeuPheValLeuGlnValMetAlaGlyP : 202 ||| !:! ! |||||| !!|||||||||||| !||||||:!!||||||||| AspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyA 221884 : GATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTG : 221943 203 : heValIleTyrAlaValIleSerGlySerCysGlyLeuSerAlaLeuPheValLeuHi : 221 !:!!!!::!!::!:!!! !|||!.!:!!|||.!!||| !|||:!!|||!.!:!!|| laLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaValHi 221944 : CTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCA : 222000 222 : sAlaCysSerMetLeuSerIleLeuValAspLysMetLysAlaLeuValAspThrArg : 240 |||||||.!!..!:!!..!:!:|||:!!..! !:!!||| !|||:!!:!! !||| sAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsnGlyArg 222001 : CGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGCCGG : 222057 241 : AspMetSerAspThrMetValGlnArgArgIleMetAspIleValGluHisGlnThrL : 260 ! ! ! !!.!! |||.!.||||||||| ! ! ||||||.!.!!.!!...!: AlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnHisValA 222058 : GCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAACACGTTC : 222117 261 : ysIleLysGlyPheLeuLysAsnIle : 268 :!||| ! !!:!:!!::: !||| rgIleLeuGlnTyrValArgCysIle 222118 : GAATATTGCAGTATGTACGTTGTATC : 222143 vulgar: gi|815893761|ref|XP_012249992.1| 10 268 . KQ414889.1 221363 222143 + 331 M 109 327 G 0 3 M 47 141 G 0 3 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221364 222143 331 + . gene_id 5 ; sequence gi|815893761|ref|XP_012249992.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221364 222143 . + . KQ414889.1 exonerate:protein2genome:local exon 221364 222143 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221364 222143 331 + . alignment_id 5 ; Query gi|815893761|ref|XP_012249992.1| ; Align 221364 11 327 ; Align 221694 120 141 ; Align 221838 167 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893761|ref|XP_012249992.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 319 Query range: 0 -> 261 Target range: 208167 -> 208956 1 : MetGluAsnIleSerAlaLeuThrLysAlaGluGluAspMetLysTyrAlaThrArgP : 20 |||..!.!.|||! ! ! !! !!!. !:!!.!.|||:!!!..!:! !..!|||. MetArgGlnIlePheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgL 208168 : ATGAGACAAATATTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTC : 208225 21 : heValLysProIleLeuGlyValValGlyAlaTrpProValSerSerSerSerSerSe : 39 !. ! ! !! ||| !:!!:!!|||:!!|||||| !|||! !..! !!|||!! euAsnValTrpThrLeuLysIleIleGlySerTrpProArgSerIleAspArgSerTr 208226 : TGAACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTG : 208282 40 : rPheSerLysIleLeuThrArgIleGluHisIleLeuThrTyrPheLeuPheLeuLeu : 58 !!!...!!!.! !! ! !! !:!! !:!!:!!|||!:!:!!! !|||.!! !!!! pLeuGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPhe 208283 : GTTAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTC : 208339 59 : LeuMetValProThrLeuMetHisValPheLeuLysGluThrAsnAsnLysIleArgL : 78 :!!:!!:!!|||||| !||| !!.!.!!||| !! !:!! ! ! !!:!| IleValIleProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnL 208340 : ATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAAT : 208399 79 : euLysLeuMetGlyProIleIleAsnCysSerMetGlnPheCysAlaTyrThrIleLe : 97 |||||:!! .!! !!:!:! ! !! !! !||| !||| !|||..!|||:! euLysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMe 208400 : TAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCAT : 208456 98 : uLeuCysArgAlaAsnGluIleGlnAsnGlyLeuAsnValIleLysGlnAspTrpIle : 116 ! ! !|||! !..!!!:|||!:!!!. !!:!!.!. !:!!:!! ||||||! ! tThrValArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArg 208457 : GACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGA : 208513 117 : ThrAlaThr<->GluGluAsnArgLeuIlePheArgSerLysAlaLysIleAlaArgA : 135 !.!!.! ! ||||||:!!||| !|||.!. !..!!!.|||!...!!||||||! AsnValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgL 208514 : AACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGA : 208573 136 : rgValValLeuThrValAlaIleThrMetTyrGlyGlyGlyLeuCysTyrArgThrVa : 154 :!:!!:!!:!!! ! !!.! ! !|||||||||||| ::: ||| !!. ysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAl 208574 : AACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGC : 208630 155 : lLeuProLeuLeuLysGlyThrIleValThrPro<->GlyAsnValThrIleArgPro : 172 !||||||||| !::!! !! !:!!||| ! ! ||||||:!!||| !||| ! aLeuProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArg 208631 : TTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGG : 208687 173 : LeuProCysProSerTyrPheValIleLeuAspGluGlnLysSerProAsnTyrGluI : 192 ||| !! !||| ! ! !!|||||||||! !:! ! |||||| !!|||| LeuValTyrProValProLysPheIleLeuAspValArgTyrSerProValAsnGluI 208688 : CTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGA : 208747 193 : leLeuPheValLeuGlnValMetAlaGlyPheValIleTyrAlaValIleSerGlySe : 211 ||!!!!:!..!:!!|||:!!:!!:!!||||||||| !:!! !:!!! !|||:! lePheTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAl 208748 : TTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGC : 208804 212 : rCysGlyLeuSerAlaLeuPheValLeuHisAlaCysSerMetLeuSerIleLeuVal : 230 !|||||||||:!!||||||.!!!.!:!!|||||||||.!!..!|||..!||||||:!! aCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMet 208805 : TTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATG : 208861 231 : AspLysMetLysAlaLeuValAspThrArgAspMetSerAspThrMetValGlnArgA : 250 ..! !|||:!! !||||||||| !|||!!: ..!!!:! !! :!!.!.!:!| SerTrpMetGluLysLeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnA 208862 : TCCTGGATGGAGAAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGA : 208921 251 : rgIleMetAspIleValGluHisGlnThrLysIle : 261 ||:!: :!!|||||||||!!.!!...!::!:!: rgLeuAlaAsnIleValGluGlnHisValArgVal 208922 : GGTTGGCTAATATCGTGGAGCAGCATGTTCGAGTG : 208956 vulgar: gi|815893761|ref|XP_012249992.1| 0 261 . KQ414889.1 208167 208956 + 319 M 119 357 G 0 3 M 46 138 G 0 3 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208168 208956 319 + . gene_id 6 ; sequence gi|815893761|ref|XP_012249992.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208168 208956 . + . KQ414889.1 exonerate:protein2genome:local exon 208168 208956 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208168 208956 319 + . alignment_id 6 ; Query gi|815893761|ref|XP_012249992.1| ; Align 208168 1 357 ; Align 208528 120 138 ; Align 208669 166 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893761|ref|XP_012249992.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 288 Query range: 15 -> 261 Target range: 274383 -> 275130 16 : TyrAlaThrArgPheValLysProIleLeuGlyValValGlyAlaTrpProValSerS : 35 |||::! !!:!!!. !::! !.!!||| ! !:!!||||||||||||:!!:!!| TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaS 274384 : TACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCT : 274441 36 : erSerSerSerSerPheSerLysIleLeuThrArgIleGluHisIleLeuThrTyrPh : 54 || !!!!!!!!!.!|||..!::!||||||:!!!.!::: ...||| |||! erProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCy 274442 : CGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTG : 274498 55 : eLeuPheLeuLeuLeuMetValProThrLeuMetHisValPheLeuLysGluThrAsn : 73 !!!!.!.|||! ! !:!::!!|||!:!:!!.!.|||:!!.!.||| !!!: !!:! sPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGluSer 274499 : CTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGT : 274555 74 : AsnLysIleArgLeuLysLeuMetGlyProIleIleAsnCysSerMetGlnPheCysA : 93 ! ! :!:!:!|||||||||:!:||||||:!! !:!!!! ! !!!: ! ! LeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleA 274556 : CTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTA : 274615 94 : laTyrThrIleLeuLeuCysArgAlaAsnGluIleGlnAsnGlyLeuAsnValIleLy : 112 !||||||! |||||| |||::!!!.||||||!::..! !!:!!.!. !!!::! snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 274616 : ATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCA : 274672 113 : sGlnAspTrp<->IleThrAlaThrGluGluAsnArgLeuIlePheArgSerLysAla : 130 ! !|||||| |||..!.!!! ! !|||:!!!:!! !:!:.!. !!.!!!.||| nThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsnAla 274673 : AACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCG : 274729 131 : LysIleAlaArgArgValValLeuThrValAlaIleThrMetTyrGlyGlyGlyLeuC : 150 ||||||!.!||| !|||!.!:!! ! !||| !||| ! !!|||! !|||| LysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuC 274730 : AAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCT : 274789 151 : ysTyrArgThrValLeuProLeuLeuLysGlyThrIleValThrProGlyAsnVal<- : 169 ||||| !!..!:!! ! !!!!! !! ! !|||:!! !..! !..!.!...! ysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrAr 274790 : GTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAG : 274846 170 : >ThrIleArgProLeuProCysProSerTyrPheValIleLeuAspGluGlnLysSer : 187 |||:!:!.! !||||||||| !:!!||| !|||:!!! ! !.!.! !||| gThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThrSer 274847 : AACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGT : 274903 188 : ProAsnTyrGluIleLeuPheValLeuGlnValMetAlaGlyPheValIleTyrAlaV : 207 |||!.. !!||||||:!!.!!!.!! !||| !!:!!:!!||||||:!!:!: !!:!! ProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerS 274904 : CCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGA : 274963 208 : alIleSerGlySerCysGlyLeuSerAlaLeuPheValLeuHisAlaCysSerMetLe : 226 ! !|||:!!! !.!!|||:!!|||:!!|||!.! !||||||! !.!!..!|| erAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLe 274964 : GCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTT : 275020 227 : uSerIleLeuValAspLysMetLysAlaLeuValAsp<->ThrArgAspMetSerAsp : 244 ||||:!:|||:!! !!!:! ! !!!!|||:!! :!!||||||...::: uSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsnLys 275021 : GAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaa : 275077 245 : ThrMetValGlnArgArgIleMetAspIleValGluHisGlnThrLysIle : 261 ...::: !..!||| ! :!!|||||||||!!. !!:!:!! AsnValTyrPheSerGluIleGlyValValValGluHisHisLeuArgVal 275078 : aatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTA : 275130 vulgar: gi|815893761|ref|XP_012249992.1| 15 261 . KQ414889.1 274383 275130 + 288 M 100 300 G 0 3 M 53 159 G 0 3 M 70 210 G 0 3 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274384 275130 288 + . gene_id 7 ; sequence gi|815893761|ref|XP_012249992.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274384 275130 . + . KQ414889.1 exonerate:protein2genome:local exon 274384 275130 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274384 275130 288 + . alignment_id 7 ; Query gi|815893761|ref|XP_012249992.1| ; Align 274384 16 300 ; Align 274687 116 159 ; Align 274849 169 210 ; Align 275062 239 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893761|ref|XP_012249992.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 285 Query range: 15 -> 261 Target range: 262849 -> 263596 16 : TyrAlaThrArgPheValLysProIleLeuGlyValValGlyAlaTrpProValSerS : 35 |||::! !!:!.!. !::! !:!:||| ! !:!!||||||||||||:!!|||: TyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerA 262850 : TACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCG : 262907 36 : erSerSerSerSerPheSerLysIleLeuThrArgIleGluHisIleLeuThrTyrPh : 54 !!|||! !|||!!!.!...!::!|||:!! ! !:!! ! !:!!:!! !|||! laSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCy 262908 : CCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTG : 262964 55 : eLeuPheLeuLeuLeuMetValProThrLeuMetHisValPheLeuLysGluThrAsn : 73 !|||.!.|||! ! !:!::!!|||:!!:!!:!:|||:!! !!|||:!!! !||| sLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsn 262965 : TCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAAT : 263021 74 : AsnLysIleArgLeuLysLeuMetGlyProIleIleAsnCysSerMetGlnPheCysA : 93 ! ! !!:!:!|||:!!:!!:!:||||||:!! !.!.!! ! !:!: .!. ! PheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleA 263022 : TTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCA : 263081 94 : laTyrThrIleLeuLeuCysArgAlaAsnGluIleGlnAsnGlyLeuAsnValIleLy : 112 !|||||| |||||| !!.!::!!!.!!:||||||..! !!:!!.!. !:!::! snTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGl 263082 : ATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCA : 263138 113 : sGlnAspTrpIleThrAlaThrGlu<->GluAsnArgLeuIlePheArgSerLysAla : 130 !:!!|||||| !! !!.!|||..! |||:!!!:!! !|||.!.! !!.!!!.||| nGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAla 263139 : GGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCG : 263195 131 : LysIleAlaArgArgValValLeuThrValAlaIleThrMetTyrGlyGlyGlyLeuC : 150 ||| !!.!||| !|||!.! !:!! !|||||| !||| ! !.!! !:!!| LysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetC 263196 : AAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGT : 263255 151 : ysTyrArgThrValLeuProLeuLeuLysGlyThrIleValThrProGlyAsnValTh : 169 || ! !! !||| ! !!!!! !! ! !..!|||! ! ! !..!.!...!! ysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrAr 263256 : GCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAG : 263312 170 : rIle<->ArgProLeuProCysProSerTyrPheValIleLeuAspGluGlnLysSer : 187 !||| ||| !|||||||||||| !||| ! !|||:!! ! .!.! !!:! gIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThrAsn 263313 : AATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAAT : 263369 188 : ProAsnTyrGluIleLeuPheValLeuGlnValMetAlaGlyPheValIleTyrAlaV : 207 |||!.. !!||||||!!!.!!!.! !||| !!:!!:!!||||||:!!:!! !|||. ProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaT 263370 : CCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGA : 263429 208 : alIleSerGlySerCysGlyLeuSerAlaLeuPheValLeuHisAlaCysSerMetLe : 226 .!! ! !|||:!!! !|||:!!!!!|||:!!|||!.! !|||||||||.!!..!|| hrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLe 263430 : CAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTT : 263486 227 : uSerIleLeuValAspLysMetLysAlaLeuValAsp<->ThrArgAspMetSerAsp : 244 |!:!:!:|||:!!..! !!!:! !! !!!!|||:!! :!!|||||| !!:! ! uAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLys 263487 : GAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAG : 263543 245 : ThrMetValGlnArgArgIleMetAspIleValGluHisGlnThrLysIle : 261 !.!:!: ! ! !..!||| ! ||||||||||||!!. !!:!:!! AsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgVal 263544 : AATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTT : 263596 vulgar: gi|815893761|ref|XP_012249992.1| 15 261 . KQ414889.1 262849 263596 + 285 M 105 315 G 0 3 M 50 150 G 0 3 M 68 204 G 0 3 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262850 263596 285 + . gene_id 8 ; sequence gi|815893761|ref|XP_012249992.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262850 263596 . + . KQ414889.1 exonerate:protein2genome:local exon 262850 263596 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262850 263596 285 + . alignment_id 8 ; Query gi|815893761|ref|XP_012249992.1| ; Align 262850 16 315 ; Align 263168 121 150 ; Align 263321 171 204 ; Align 263528 239 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893761|ref|XP_012249992.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 265 Query range: 120 -> 261 Target range: 304446 -> 304863 121 : GluAsnArgLeuIlePheArgSerLysAlaLysIleAlaArgArgValValLeuThrV : 140 ..!:!!||| !!!:.!.! !!.! ! !.!:!!!!:!.!|||!.!:!!..!:!!! ! ArgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIleC 304447 : AGAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAATCT : 304504 141 : alAlaIleThrMetTyrGlyGlyGlyLeuCysTyrArgThrValLeuProLeuLeuLy : 159 !|||||| !|||||| !|||||| ! !|||!.!||||||:!!! !!!! !! ysAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheAlaTh 304505 : GCGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCGAC : 304561 160 : sGlyThrIleValThrProGlyAsnValThrIleArgProLeuProCysProSerTyr : 178 |||||| !||| ! ! !||| !||||||!:!|||||| !! !|||!!!||| rGlyThrTyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProThrTyr 304562 : CGGAACGTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACCTAC : 304618 179 : PheValIleLeuAspGluGlnLysSerProAsnTyrGluIleLeuPheValLeuGlnV : 198 !!.!:!!!!!|||! |||! !||||||! !||||||:!::!!!:! !!:!!!!. SerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheValHisC 304619 : AGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCATT : 304678 199 : alMetAlaGlyPheValIleTyrAlaValIleSerGlySerCysGlyLeuSerAlaLe : 217 !|||..!|||!:!|||||||||:!!:!!! !:!!|||:!!|||||||||:!!||||| ysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLe 304679 : GCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCT : 304735 218 : uPheValLeuHisAlaCysSerMetLeuSerIleLeuValAspLysMetLysAlaLeu : 236 ||||!.! !|||||||||.!!...:!!..!|||:!!:!!..!::!:!! ! !||| uPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAspLeu 304736 : TTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGATCTT : 304792 237 : ValAspThrArgAspMetSerAspThrMetValGlnArgArgIleMetAspIleValG : 256 |||:!!!:!!:!!!: |||||| :!!.!.!:!|||:!!!!:!!:||||||| ValAsnSerLysGluSerSerAsp------LeuAspLysArgLeuIleGluIleValG 304793 : GTCAACAGCAAAGAATCATCTGAT------TTAGATAAACGATTAATAGAAATTGTTG : 304846 257 : luHisGlnThrLysIle : 261 |||||!!. !::!||| luHisHisLeuArgIle 304847 : AGCATCATTTGCGAATT : 304863 vulgar: gi|815893761|ref|XP_012249992.1| 120 261 . KQ414889.1 304446 304863 + 265 M 124 372 G 2 0 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304447 304863 265 + . gene_id 9 ; sequence gi|815893761|ref|XP_012249992.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304447 304863 . + . KQ414889.1 exonerate:protein2genome:local exon 304447 304863 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 304447 304863 265 + . alignment_id 9 ; Query gi|815893761|ref|XP_012249992.1| ; Align 304447 121 372 ; Align 304819 247 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893761|ref|XP_012249992.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 245 Query range: 8 -> 261 Target range: 289714 -> 290476 9 : LysAlaGluGluAspMetLysTyrAlaThrArgPheValLysProIleLeuGlyValV : 28 ::: !||| !|||!!::::|||.!! !..!!!. ! ! !|||||| ! !: ArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleLeuLysProI 289715 : CGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCTTGAAACCGA : 289772 29 : alGlyAlaTrpPro<->ValSerSerSerSerSerSerPheSerLysIleLeuThrAr : 46 !!||| !!::||| |||! !||| !!:!!|||!!! !..!::!! !:!! leGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgThrAlaSerVa 289773 : TAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGT : 289829 47 : gIleGluHisIleLeuThrTyrPheLeuPheLeuLeuLeuMetValProThrLeuMet : 65 !:!: ! !:!::!! !! !! :!!.!!! !!!!:!!!!:|||||| ! ! lLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValProPheSerHis 289830 : GTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCAT : 289886 66 : HisValPheLeuLysGluThrAsnAsnLysIleArgLeuLysLeuMetGlyProIleI : 85 ||||||.!.!!!!..!!:!.!:!!! !!.! !:!!||| !:!:||||||:!:! HisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuGlyProLeuT 289887 : CACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCGGACCGTTGA : 289946 86 : leAsnCysSerMetGlnPheCysAlaTyrThrIleLeuLeuCysArgAlaAsnGluIl : 104 !|||! !! !|||! ! !||| ! !!!! ! !:!!.!:::! !|| hrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGlySerAlaIl 289947 : CGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGAT : 290003 105 : eGlnAsnGlyLeuAsnValIleLysGlnAspTrp<->IleThrAlaThrGluGluAsn : 122 | ..! !!:!!!!. !|||:!!::!|||||| !!: ! ! !|||!!::!! eGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAspGluAspHis 290004 : CGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCAT : 290060 123 : ArgLeuIlePheArgSerLysAlaLysIleAlaArgArgValValLeuThrValAlaI : 142 |||:!!|||.!.! !!!! ! !.!! !!!:::!|||!.!:!!:!! ! ! !|||| ArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysLeuCysAlaI 290061 : CGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGA : 290120 143 : leThrMetTyrGlyGlyGlyLeuCysTyrArgThrValLeuProLeuLeuLysGlyTh : 161 || !:!!||| !|||||||||! !|||!.!||||||:!!||||||!!!..! !! lePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPheSerLysLy 290121 : TCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAA : 290177 162 : rIleValThrProGlyAsnValThrIleArgProLeuProCysProSerTyrPheVal : 180 !! !|||!.! |||||||||||||||||||||||| !!! !|||.!!||| ! ! sSerValAsn---GlyAsnValThrIleArgProLeuThrTyrProGlyTyrGluGlu 290178 : GAGCGTGAAC---GGTAACGTGACTATCAGACCTCTAACTTATCCCGGTTACGAGGAG : 290231 181 : IleLeuAspGluGlnLysSerProAsnTyrGluIleLeuPheValLeuGlnValMetA : 200 .!!!!!|||! |||||||||||| |||||||||:!!||| !:!!!!. !:!: PhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetHisCysValT 290232 : TTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCT : 290291 201 : laGlyPheValIleTyrAlaValIleSerGlySerCysGlyLeuSerAlaLeuPheVa : 219 !! !.!.:!!! !:!!! !! !!.!:!!! !.!!|||!!!.!!:!!|||!. yrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePheAl 290292 : ACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGC : 290348 220 : lLeuHisAlaCysSerMetLeuSerIleLeuValAspLysMetLysAlaLeuValAsp : 238 ! !|||.!!|||.!!..!:!!!.!|||! !..! ::!:!!:!!! !|||..! ! aThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAspLeuThrLys 290349 : CACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTGACAAAG : 290405 239 : ThrArgAspMetSerAspThrMetValGlnArgArgIleMetAspIleValGluHisG : 258 ! ! !! :!!! !!!:! ! |||... !|||:!: !! !:!!|||... !! ArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValValValSerGlyH 290406 : AGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTGTGAGCGGTC : 290465 259 : lnThrLysIle : 261 !...!:!!||| isValGluIle 290466 : ACGTGGAGATC : 290476 vulgar: gi|815893761|ref|XP_012249992.1| 8 261 . KQ414889.1 289714 290476 + 245 M 24 72 G 0 3 M 83 249 G 0 3 M 49 147 G 1 0 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289715 290476 245 + . gene_id 10 ; sequence gi|815893761|ref|XP_012249992.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289715 290476 . + . KQ414889.1 exonerate:protein2genome:local exon 289715 290476 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 289715 290476 245 + . alignment_id 10 ; Query gi|815893761|ref|XP_012249992.1| ; Align 289715 9 72 ; Align 289790 33 249 ; Align 290042 116 147 ; Align 290189 166 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893761|ref|XP_012249992.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 229 Query range: 15 -> 261 Target range: 256652 -> 257399 16 : TyrAlaThrArgPheValLysProIleLeuGlyValValGlyAlaTrpProValSerS : 35 |||::! !!:!!!. !::! !.!!||| ! !:!!|||||||||||| !|||| TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerS 256653 : TACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGT : 256710 36 : erSerSerSerSerPheSerLysIleLeuThrArgIleGluHisIleLeuThrTyrPh : 54 |||||!!!!!!!!!.!!..!::!! !:!!:!!! !:!! !:!!|||:!! !||| erSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGl 256711 : CGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGG : 256767 55 : eLeuPheLeuLeuLeuMetValProThrLeuMetHisValPheLeuLysGluThrAsn : 73 !! !.!.|||!!! !:!!:!!||| !|||:!:|||||||||||| ! !!: !!:! ySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSer 256768 : TTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGT : 256824 74 : AsnLysIleArgLeuLysLeuMetGlyProIleIleAsnCysSerMetGlnPheCysA : 93 ! ! :::::::::||| ...||||||!!:! !:!!!! ! !!!:...! !..! PheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaA 256825 : TTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCA : 256884 94 : laTyrThrIleLeuLeuCysArgAlaAsnGluIleGlnAsnGlyLeuAsnValIleLy : 112 !||||||:!:||||||! !:!!.!!!.!!:|||!:: !! !!:!!.!. !|||:! snTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGl 256885 : ATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGA : 256941 113 : sGlnAspTrp<->IleThrAlaThrGluGluAsnArgLeuIlePheArgSerLysAla : 130 ! !|||||| !!:..! !! !|||:!!:!!!:!! !:!:.!.! !!.!!!.||| uThrAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAla 256942 : AACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCG : 256998 131 : LysIleAlaArgArgValValLeuThrValAlaIleThrMetTyrGlyGlyGlyLeuC : 150 !:!.!!!.!||| !|||!.! ! ! !||| !! !||| ! .!!||| ...| ArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheC 256999 : AGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttct : 257058 151 : ysTyrArgThrValLeuProLeuLeuLysGlyThrIleValThrProGlyAsnValTh : 169 ||::: ..! !! ! !!||| !! !! !! !||| !..! !..!.!...!|| ysPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrTh 257059 : gtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAAC : 257115 170 : rIle<->ArgProLeuProCysProSerTyrPheValIleLeuAspGluGlnLysSer : 187 |||| ||| !|||||| ! !! !||| !:!:|||:!!! .!.:!!||| rIleValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSer 257116 : GATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGT : 257172 188 : ProAsnTyrGluIleLeuPheValLeuGlnValMetAlaGlyPheValIleTyrAlaV : 207 |||!.. !!||||||:!! !! !!:!!|||..! !:!!..!.!!:!! !.!! ProThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrS 257173 : CCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTA : 257232 208 : alIleSerGlySerCysGlyLeuSerAlaLeuPheValLeuHisAlaCysSerMetLe : 226 !! ! !.!!! !! !.!!|||:!!|||:!!|||!.! !||||||! !.!!..!|| erThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLe 257233 : GTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTT : 257289 227 : uSerIleLeuValAspLysMetLysAlaLeuVal<->AspThrArgAspMetSerAsp : 244 |!!!:!:|||:!!... !!!:! !! !!!!||| !!::!!|||:!! ... uThrValLeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLys 257290 : GACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaa : 257346 245 : ThrMetValGlnArgArgIleMetAspIleValGluHisGlnThrLysIle : 261 |||... !:!!:!||| ! ||||||||||||!!. !!:!:!: ThrPheProPheLysGlnIleGlyValIleValGluHisHisLeuArgVal 257347 : acgtttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTG : 257399 vulgar: gi|815893761|ref|XP_012249992.1| 15 261 . KQ414889.1 256652 257399 + 229 M 100 300 G 0 3 M 55 165 G 0 3 M 67 201 G 0 3 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256653 257399 229 + . gene_id 11 ; sequence gi|815893761|ref|XP_012249992.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256653 257399 . + . KQ414889.1 exonerate:protein2genome:local exon 256653 257399 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256653 257399 229 + . alignment_id 11 ; Query gi|815893761|ref|XP_012249992.1| ; Align 256653 16 300 ; Align 256956 116 165 ; Align 257124 171 201 ; Align 257328 238 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893761|ref|XP_012249992.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 222 Query range: 286 -> 389 Target range: 280091 -> 280474 287 : GluTrpGluAsnAsnAsnAlaThrAlaValLeuIleTyrSerThrIleGlnIleSerC : 306 |||||||||.!.|||:!!|||! !!.!..!!!!! |||! !! !.!!! ||||||! GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerL 280092 : GAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTT : 280149 307 : ysThrPheSerValPheIleLeuCysTyrIleGlyGlnLeuLeuValAspGlu >>> : 324 ||||||!:!||||||||||||||||||||||||:!!:!!||| !!!:::: euThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 280150 : TAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt... : 280205 325 : > Target Intron 1 >>>> AsnArgIleValGlyGlnAlaSerTyrMetIleA : 335 74 bp ! !! !|||||| !:!!!!!|||||||||: ++CysLeuLysValGlyValSerThrTyrMetIleA 280206 : ......................agTGCTTAAAAGTCGGCGTGTCAACTTACATGATCG : 280310 336 : snTrpTyrTyrLeuSerArgLysHisMetArgSerLeuIleLeuIleIleAlaMetSe : 354 !!|||||| !||| !! !!||| ! !:!.!!||||||||||||.!!|||:!!|| spTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaValSe 280311 : ACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCGTGTC : 280367 355 : rAsnTyrProMetLysLeuMetAlaGlyLysMetValGluMetSerLeuAlaThrPhe : 373 ||||! ! !!!!:||||||! |||||||||!!::!!!!::!:||||||::!!:!||| rAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPhe 280368 : GAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTC : 280424 374 : ThrAspValMetLysMetSerMetGlyTyrLeuAsnIleLeuArgAsn : 389 !..!|||! ! !!:!:!:!:..!|||! !:!!:!:! ! !||| CysSerValSerIleIleAsnLeuSerTyrTyrHisLeuTyrAspAsn 280425 : TGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTGTACGATAAT : 280474 vulgar: gi|815893761|ref|XP_012249992.1| 286 389 . KQ414889.1 280091 280474 + 222 M 37 111 5 0 2 I 0 70 3 0 2 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280092 280474 222 + . gene_id 12 ; sequence gi|815893761|ref|XP_012249992.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280474 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280474 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280092 280474 222 + . alignment_id 12 ; Query gi|815893761|ref|XP_012249992.1| ; Align 280092 287 111 ; Align 280277 324 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893761|ref|XP_012249992.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 215 Query range: 286 -> 391 Target range: 264537 -> 265010 287 : GluTrpGluAsnAsnAsnAlaThrAlaValLeuIleTyrSerThrIleGlnIleSerC : 306 |||||||||!:!:!:::: ::: !! !|||! !! !|||! !|||||| GluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerM 264538 : GAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATACTGATATCAA : 264595 307 : ysThrPheSerValPheIleLeuCysTyrIleGlyGlnLeuLeuValAspGlu >>> : 324 ! !!:!:!!|||:!!:!!||||||||||||:!!:!!|||..!!!:::: etCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGln++ 264596 : TGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcaggt... : 264651 325 : > Target Intron 1 >>>> AsnArgIleValGlyGlnAlaSerTyrMetIleA : 335 78 bp !!:!! !||||||:!!!.! !|||||| | ++CysLysLysValGlyGluValValTyrMetSerA 264652 : ......................agTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGA : 264760 336 : snTrpTyrTyrLeuSerArgLysHisMetArgSerLeuIleLeuIleIleAlaMetSe : 354 |||||||||||||| !! !||| !!!!:! !..!||||||||||||||| !! || snTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLeuIleIleLeuArgSe 264761 : ATTGGTATTACTTACCCTACAAAGATATCCTTGATCTGATTCTCATCATTTTAAGATC : 264817 355 : rAsnTyrProMetLysLeuMetAlaGlyLysMetValGluMetSerLeuAlaThrPhe : 373 |!:! !.!.|||!!!! |||||||||!!::!!.!.||||||:!! !|||||| rSerValValPheLysPheThrAlaGlyLysIleLeuHisMetSerMetTyrThrPhe 264818 : CAGCGTGGTGTTTAAATTCACCGCTGGAAAGATACTTCACATGTCCATGTACACATTC : 264874 374 : ThrAsp >>>> Target Intron 2 >>>> ValMetLysMetSerMetGlyTy : 383 !:!||| 80 bp |||!!:||| |||.!. !|| SerAsp++ ++ValIleLysSerSerPheThrTy 264875 : AGTGACgt.........................aggTAATCAAATCCTCTTTCACGTA : 264984 384 : rLeuAsnIleLeuArgAsnValIle : 391 |||||||:!!||||||.!...!!!: rLeuAsnLeuLeuArgGlnThrMet 264985 : CTTAAACTTACTTCGCCAAACGATG : 265010 vulgar: gi|815893761|ref|XP_012249992.1| 286 391 . KQ414889.1 264537 265010 + 215 M 37 111 5 0 2 I 0 74 3 0 2 M 52 156 5 0 2 I 0 76 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264538 265010 215 + . gene_id 13 ; sequence gi|815893761|ref|XP_012249992.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264538 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264726 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265010 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265010 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264538 265010 215 + . alignment_id 13 ; Query gi|815893761|ref|XP_012249992.1| ; Align 264538 287 111 ; Align 264727 324 156 ; Align 264963 376 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893761|ref|XP_012249992.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 214 Query range: 270 -> 385 Target range: 228199 -> 230433 271 : IleThrGlnTyrValCysLeuSerGluMetIleCysGlyThrSerLeuGluTrpGluA : 290 :::||| !! !||| !.!! |||! ! !! !|||! !||||||.!. LeuThr***ArgCysCysSerGlyIleCysIlePheThrMetSer***GluTrpAsnP 228200 : ttaaCGTAACGATGTTGCAGCGGAATTTGCATTTTCACGATGTCATAGGAATGGAATC : 228257 291 : snAsnAsnAlaThrAlaValLeuIleTyrSerThrIleGlnIleSerCysThrPheSe : 309 !!..!. !||| !!.!:!!! !||||||.!!:!!! :!!|||! !||||||:: roLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerPheThrPheAs 228258 : CGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCTTTAccttcaa : 228314 310 : rValPheIleLeuCysTyrIleGlyGlnLeuLeuValAspGlu >>>> Target I : 324 ::::||||||...||||||||||||:!!:!!:!!!.!!!:.!. 1889 nIlePheIlePheCysTyrIleGlyGluIleValAlaGluHis++ 228315 : tattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACgt............. : 228361 325 : ntron 1 >>>> AsnArgIleValGlyGlnAlaSerTyrMetIleAsnTrpTyrTy : 338 bp !|||! !||||||:!! !||||||||||||.!.|||||| ++CysArgLysValGlyGluLysSerTyrMetIleGluTrpTyrAr 228362 : ............agTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCG : 230290 339 : rLeuSerArgLysHisMetArgSerLeuIleLeuIleIleAlaMetSerAsnTyrPro : 357 |||!!! !!!!. ! ! !! !!!!! !||||||||||||||||||||||||! ! !! gLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSer 230291 : ATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCG : 230347 358 : MetLysLeuMetAlaGlyLysMetValGluMetSerLeuAlaThrPheThrAspValM : 377 ! !|||!!!! ||||||!!.|||||||||:!:|||:!! !||||||!:!||||||! ThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnThrPheSerAspValS 230348 : ACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGACGTAA : 230407 378 : etLysMetSerMetGlyTyrLeuAsn : 385 ! !!:! ! ! !||| !||| erIleIlePheSerValTyrThrAsn 230408 : GTATCATATTCTCTGTTTACACGAAT : 230433 vulgar: gi|815893761|ref|XP_012249992.1| 270 385 . KQ414889.1 228199 230433 + 214 M 53 159 5 0 2 I 0 1885 3 0 2 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228200 230433 214 + . gene_id 14 ; sequence gi|815893761|ref|XP_012249992.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 228200 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228200 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228200 230433 214 + . alignment_id 14 ; Query gi|815893761|ref|XP_012249992.1| ; Align 228200 271 159 ; Align 230248 324 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893761|ref|XP_012249992.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 10 -> 193 Target range: 294672 -> 295227 11 : GluGluAspMetLysTyrAlaThrArgPheValLysProIleLeuGlyValValGlyA : 30 ..!.!.|||:!! ! !!::! !!:!!:! !::! !:!:||| ! !:!!||| ArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyL 294673 : AGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTC : 294730 31 : laTrpPro<->ValSerSerSerSerSerSerPheSerLysIleLeuThrArgIleGl : 48 !|||||| :!!! !||| !!!!|||!.!.!.!:!|||:!!|||:!!! !||| euTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLe 294731 : TTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCT : 294787 49 : uHisIleLeuThrTyrPheLeuPheLeuLeuLeuMetValProThrLeuMetHisVal : 67 ! ! ! ! ! !!. ! ! |||!!!:!!:!:|||||| ! ! ! ! uIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCys 294788 : GATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGT : 294844 68 : PheLeuLysGluThrAsnAsnLysIleArgLeuLysLeuMetGlyProIleIleAsnC : 87 ! !!! ! ! ||| |||:::::!:!!||||||:!!||||||:!!:!! !!! ValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrS 294845 : GTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACT : 294904 88 : ysSerMetGlnPheCysAlaTyrThrIleLeuLeuCysArgAlaAsnGluIleGlnAs : 106 !! !:!:....!. ! !|||!:! !|||:!!! !:!.!! !! !.!!:!!:! erMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHi 294905 : CTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCA : 294961 107 : nGlyLeuAsnValIleLysGlnAspTrp<->IleThrAlaThrGluGluAsnArgLeu : 124 ! !!:!!.!.! !|||:!!.!.|||||| :!:! !! !!.! !|||:!!||| ! sCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAla 294962 : TTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCG : 295018 125 : IlePheArgSerLysAlaLysIleAlaArgArgValValLeuThrValAlaIleThrM : 144 |||.!.! !!.!!!.|||! !:!!.!!!:!|||:!!..!:!!.!! !!.!!|||! !! IleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleI 295019 : ATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAA : 295078 145 : etTyrGlyGlyGlyLeuCysTyrArgThrValLeuProLeuLeuLysGlyThrIleVa : 163 !:|||.!!..!!.!:!!! |||!.!.!!:!!:::|||...............:!:! leTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGl 295079 : TCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGA : 295135 164 : lThrProGlyAsnValThrIleArgProLeuProCysProSerTyrPheValIleLeu : 182 !!.! ! !||| !||||||||| !!|||||| !|||.!!||| :!!.!!:!! uAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheVal 295136 : GAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTA : 295192 183 : AspGluGlnLysSerProAsnTyrGluIleLeu : 193 |||! ! ...||||||!.!|||||||||:!! AspAlaTyrSerSerProThrTyrGluIleIle 295193 : GACGCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: gi|815893761|ref|XP_012249992.1| 10 193 . KQ414889.1 294672 295227 + 204 M 22 66 G 0 3 M 83 249 G 0 3 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294673 295227 204 + . gene_id 15 ; sequence gi|815893761|ref|XP_012249992.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294673 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294673 295227 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294673 295227 204 + . alignment_id 15 ; Query gi|815893761|ref|XP_012249992.1| ; Align 294673 11 66 ; Align 294742 33 249 ; Align 294994 116 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893761|ref|XP_012249992.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 200 Query range: 286 -> 387 Target range: 305100 -> 305816 287 : GluTrpGluAsnAsnAsnAlaThrAlaValLeuIleTyrSerThrIleGlnIleSerC : 306 !!:||||||!:!!:!|||.!!..!::!:!! !! !|||!!!..!:!!! !|||||| AspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValLeuLeuIleSerV 305101 : GATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGTTACTGATATCTG : 305158 307 : ysThrPheSerValPheIleLeuCysTyrIleGlyGlnLeuLeuValAspGluAsnAr : 325 ||||||!:!:!!|||||||||||||||||||||:!!:!!|||:!!!!::!! alThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMetGluLysValSe 305159 : TAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTATGGAAAAGGTGag : 305215 326 : g{Il} >>>> Target Intron 1 >>>> {e}ValGlyGlnAlaSerTyrMet : 333 {.!} 413 bp {!}|||||| !:!!!!!!:!||| r{Ph}-+ ++{e}ValGlyLeuSerCysPheMet 305216 : t{tt}tt.........................ag{C}GTTGGATTATCCTGTTTTATG : 305652 334 : IleAsnTrpTyrTyrLeuSerArgLysHisMetArgSerLeuIleLeuIleIleAlaM : 353 |||!:!||||||:!!||| !!! !||| !!:!.!.!!||||||||||||||||||| IleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleLeuIleIleAlaM 305653 : ATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTTTAATCATTGCCA : 305712 354 : etSerAsnTyrProMetLysLeuMetAlaGlyLysMetValGluMetSerLeuAlaTh : 372 |||||!:! !!||| |||:!!! |||||||||:!:|||!!::!:||||||:!!|| etSerSerAsnProAlaLysIleSerAlaGlyLysValValAspLeuSerLeuSerTh 305713 : TGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTATCTTTATCCAC : 305769 373 : rPheThrAspValMetLysMetSerMetGlyTyrLeuAsnIleLeu : 387 |||| !:!!|||! ! ... ... ::::::|||::: rPheGlyAsnValSerTyrTyrGlnTyrSerAsnIleSerIleVal 305770 : ATTTGGAAACGTGAGTTACTATcaatattccaatatttcaattgtt : 305816 vulgar: gi|815893761|ref|XP_012249992.1| 286 387 . KQ414889.1 305100 305816 + 200 M 39 117 S 0 2 5 0 2 I 0 409 3 0 2 S 1 1 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305101 305816 200 + . gene_id 16 ; sequence gi|815893761|ref|XP_012249992.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305101 305219 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305220 305221 . + . intron_id 1 ; splice_site "tt" KQ414889.1 exonerate:protein2genome:local intron 305220 305632 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305631 305632 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305633 305816 . + . KQ414889.1 exonerate:protein2genome:local exon 305633 305816 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305101 305816 200 + . alignment_id 16 ; Query gi|815893761|ref|XP_012249992.1| ; Align 305101 287 117 ; Align 305634 327 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893761|ref|XP_012249992.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 191 Query range: 286 -> 389 Target range: 214629 -> 215061 287 : GluTrpGluAsnAsnAsnAlaThrAlaValLeuIleTyrSerThrIleGlnIleSerC : 306 ||||||.!.:::|||||| !|||.!!..!:!!! !||| !..!:!: ! |||||| GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValValLeuTyrIleSerL 214630 : gAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGGTGTTGTATATCTCTC : 214687 307 : ysThrPheSerValPheIleLeuCysTyrIleGlyGlnLeu{Le} >>>> Target : 320 ||||||::::::||||||...||||||||||||:!!|||{:!} 1 euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeu{Va}++ 214688 : tcactttcaatattttcatattttgttaCATAGGCGAGCTT{GT}gt........... : 214733 321 : Intron 1 >>>> {u}ValAspGluAsnArgIleValGlyGlnAlaSerTyrMet : 333 23 bp {!}:!!.!.:!! !!:!! ||||||:!!!.!||||||||| +-{l}LeuGlnGlnCysLysLysValGlyGluValSerTyrMet 214734 : ..............at{G}TTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATG : 214891 334 : IleAsnTrpTyrTyrLeuSerArgLysHisMetArgSerLeuIleLeuIleIleAlaM : 353 |||.!.|||||| ||| !! !!!!. ! ! !! !!!!! !|||||||||!!:|||| IleGluTrpTyrArgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaM 214892 : ATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAA : 214951 354 : etSerAsnTyrProMetLysLeuMetAlaGlyLysMetValGluMetSerLeuAlaTh : 372 ||||||||! !!:!:|||!!!! ||||||!!.|||||||||:!!|||:!!::!|| etSerAsnSerSerValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerTh 214952 : TGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCAC : 215008 373 : rPheThrAspValMetLysMetSerMetGlyTyrLeuAsnIleLeuArgAsn : 389 ||||!:!..!|||! ! ! ..!:!: !! ! ...|||... ||| rPheSerSerValSerIleLysGlnLeuProLeuTyrThrIlePheThrAsn 215009 : TTTCAGCAGTGTAAGTATCAAACAACTTCCATTATacacaattttcacaaat : 215061 vulgar: gi|815893761|ref|XP_012249992.1| 286 389 . KQ414889.1 214629 215061 + 191 M 33 99 S 0 2 5 0 2 I 0 119 3 0 2 S 1 1 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214630 215061 191 + . gene_id 17 ; sequence gi|815893761|ref|XP_012249992.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214630 214730 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214730 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214731 214732 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214731 214853 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214852 214853 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 214854 215061 . + . KQ414889.1 exonerate:protein2genome:local exon 214854 215061 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214630 215061 191 + . alignment_id 17 ; Query gi|815893761|ref|XP_012249992.1| ; Align 214630 287 99 ; Align 214855 321 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893761|ref|XP_012249992.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 185 Query range: 286 -> 376 Target range: 272836 -> 273176 287 : GluTrpGluAsnAsnAsnAlaThrAlaValLeuIleTyrSerThrIleGlnIleSerC : 306 |||||| :!!:!!:!! ! !::!:!! !! |||! !! !|||! |||||| GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 307 : ysThrPheSerValPheIleLeuCysTyrIleGlyGlnLeuLeuValAspGlu >>> : 324 ||||||::::::||||||::!||||||||||||:!!:!!|||..!!!:..! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 325 : > Target Intron 1 >>>> AsnArgIleValGlyGlnAlaSerTyrMetIleA : 335 70 bp ::: :::|||:!!!.! !||||||! | ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 336 : snTrpTyrTyrLeuSerArgLysHisMetArgSerLeuIleLeuIleIleAlaMetSe : 354 |||||||||||||| !! !!||| !!!!:! !..!|||||||||||||||:!!! !! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 355 : rAsnTyrProMetLysLeuMetAlaGlyLysMetValGluMetSerLeuAlaThrPhe : 373 !!:! ! !!!:|||:!!! ||||||!:!!!:||| ||||||:!! !|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 374 : ThrAspVal : 376 !|||||| GlyAspVal 273166 : GGCGATGTA : 273176 vulgar: gi|815893761|ref|XP_012249992.1| 286 376 . KQ414889.1 272836 273176 + 185 M 37 111 5 0 2 I 0 66 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273176 185 + . gene_id 18 ; sequence gi|815893761|ref|XP_012249992.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273176 185 + . alignment_id 18 ; Query gi|815893761|ref|XP_012249992.1| ; Align 272837 287 111 ; Align 273018 324 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893761|ref|XP_012249992.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 286 -> 376 Target range: 258264 -> 258624 287 : GluTrpGluAsnAsnAsnAlaThrAlaValLeuIleTyrSerThrIleGlnIleSerC : 306 ||||||...!.....::: ::: |||! !! !|||! |||||| GluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheMetIleLeuIleSerL 258265 : gaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTATGATACTCATATcac : 258322 307 : ysThrPheSerValPheIleLeuCysTyrIleGlyGlnLeuLeuValAspGlu >>> : 324 :::|||::::::|||::::::||||||||||||:!!:!!|||..!!!::!! euSerPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluGln++ 258323 : tttctttcaatatttttgtaatatgttACATAGGTGAAATATTAACAGAACAGgt... : 258378 325 : > Target Intron 1 >>>> AsnArgIleValGlyGlnAlaSerTyrMetIleA : 335 90 bp !!:!! !||||||.!.!.! !||||||! !: ++CysLysLysValGlyAspValValTyrMetThrA 258379 : ......................agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAG : 258499 336 : snTrpTyrTyrLeuSerArgLysHisMetArgSerLeuIleLeuIleIleAlaMetSe : 354 !!|||||||||||| !! !|||...!!:! !..!|||||||||:!!|||||| || spTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLeuValIleAlaArgSe 258500 : ACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTTGGTAATCGCACGATC : 258556 355 : rAsnTyrProMetLysLeuMetAlaGlyLysMetValGluMetSerLeuAlaThrPhe : 373 |!:! !:!::!!:!!! |||||||||... ...||||||:!! !|||||| rSerValValValGlnIleThrAlaGlyLysPhePheHisMetSerIleTyrThrPhe 258557 : GAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatGTCCATTTACACATTC : 258613 374 : ThrAspVal : 376 !:!|||||| SerAspVal 258614 : AGCGATGTG : 258624 vulgar: gi|815893761|ref|XP_012249992.1| 286 376 . KQ414889.1 258264 258624 + 177 M 37 111 5 0 2 I 0 86 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258265 258624 177 + . gene_id 19 ; sequence gi|815893761|ref|XP_012249992.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258265 258624 177 + . alignment_id 19 ; Query gi|815893761|ref|XP_012249992.1| ; Align 258265 287 111 ; Align 258466 324 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893761|ref|XP_012249992.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 303 -> 376 Target range: 200164 -> 200452 304 : IleSerCysThrPheSerValPheIleLeuCysTyrIleGlyGlnLeuLeuValAspG : 323 :!!! !! !||||||!!!:!!||||||||||||! !|||||||||||||||:!!|||| ValLeuSerThrPheCysIlePheIleLeuCysCysIleGlyGlnLeuLeuIleAspG 200165 : GTCTTATCCACCTTCTGCATTTTCATACTATGTTGCATCGGTCAACTTCTTATCGATG : 200222 324 : lu >>>> Target Intron 1 >>>> AsnArgIleValGlyGlnAlaSerTyr : 332 || 68 bp ||| !:!:|||||| !.!!|||! ! lu++ ++AsnTyrValValGlyLeuThrSerCys 200223 : AAgt.........................agAATTACGTGGTTGGATTAACATCTTGC : 200317 333 : MetIleAsnTrpTyrTyrLeuSerArgLysHisMetArgSerLeuIle-LeuIleIle : 351 ! !:!:||||||! ! !! ! !!!.!!:!|||:!!|||! !|||! !#||||||||| ThrValAsnTrpCysArgProProAsnArgHisValArgTyrLeuThr#LeuIleIle 200318 : ACGGTGAATTGGTGTCGTCCTCCAAACAGACATGTGCGCTATCTGACCGCTGATAATT : 200375 352 : AlaMetSerAsnTyrProMetLysLeuMetAlaGlyLysMetValGluMetSerLeuA : 371 |||||||||||||||! !!!:!:!||| ::!.!!|||:!!||||||!!:!:!|||| AlaMetSerAsnTyrLeuIleArgLeuAlaSerSerLysValValGluIleAsnLeuA 200376 : GCCATGTCTAATTACCTAATAAGATTAGCAAGTAGTAAAGTGGTCGAAATAAATTTAG : 200435 372 : laThrPheThrAspVal : 376 ||||||||||||||||| laThrPheThrAspVal 200436 : CTACTTTCACAGATGTA : 200452 vulgar: gi|815893761|ref|XP_012249992.1| 303 376 . KQ414889.1 200164 200452 + 167 M 20 60 5 0 2 I 0 64 3 0 2 M 25 75 F 0 1 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 200165 200452 167 + . gene_id 20 ; sequence gi|815893761|ref|XP_012249992.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 200165 200224 . + . KQ414889.1 exonerate:protein2genome:local exon 200165 200224 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 200225 200226 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 200225 200292 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 200291 200292 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 200293 200452 . + . KQ414889.1 exonerate:protein2genome:local exon 200293 200452 . + . insertions 0 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local similarity 200165 200452 167 + . alignment_id 20 ; Query gi|815893761|ref|XP_012249992.1| ; Align 200165 304 60 ; Align 200293 324 75 ; Align 200369 349 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893761|ref|XP_012249992.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 280 -> 381 Target range: 244423 -> 244832 281 : IleCysGlyThrSerLeuGluTrpGluAsnAsnAsnAlaThrAlaValLeuIleTyrS : 300 :::|||... !||||||! !.!.!:!:!!|||! ! !:!!:!!! |||! MetCysAlaCysPhe***GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrP 244424 : atgtgtgcttgtttctaGGAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACT : 244481 301 : erThrIleGlnIleSerCysThrPheSerValPheIleLeuCysTyrIleGlyGlnLe : 319 !! ! !! :!!:!! !..!! !!:!..!||||||||||||||||||.!!.!. heIleAlaLeuValAlaIleValSerAsnThrPheIleLeuCysTyrIleSerAspAr 244482 : TTATAGCACTCGTTGCTATTGTTTCTAATACATTTATACTCTGTTATATCAGCGACAG : 244538 320 : uLeuValAspGlu >>>> Target Intron 1 >>>> AsnArgIleValGlyG : 329 !|||..!!!::!! 106 bp ! !! !||||||: gLeuThrGluGln++ ++CysLeuLysValGlyG 244539 : GCTGACAGAACAGgt.........................agTGCTTGAAAGTTGGTG : 244674 330 : lnAlaSerTyrMetIleAsnTrpTyrTyrLeuSerArgLysHisMetArgSerLeuIl : 348 !!!.! !||||||! !:!!|||||||||||| !!!:!!:!...!!:! !..!||||| luValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIl 244675 : AAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAAT : 244731 349 : eLeuIleIleAlaMetSerAsnTyrProMetLysLeuMetAlaGlyLysMetValGlu : 367 |||||||||| ! |||||| !:!::!!:!!! |||||||||:!::!!.!. eLeuIleIleLysArgSerAsnMetValValGluIleThrAlaGlyLysValLeuHis 244732 : TCTGATCATTAAACGATCGAACATGGTCGTTGAAATCACCGCTGGAAAAGTATTACAT : 244788 368 : MetSerLeuAlaThrPheThrAspValMetLysMetSerMet : 381 ||||||||| !|||||| !||||||! :!!! !.!:!: MetSerLeuTyrThrPheGlyAspValSerGluThrLysLeu 244789 : ATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAACTT : 244832 vulgar: gi|815893761|ref|XP_012249992.1| 280 381 . KQ414889.1 244423 244832 + 160 M 43 129 5 0 2 I 0 102 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244424 244832 160 + . gene_id 21 ; sequence gi|815893761|ref|XP_012249992.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244424 244552 . + . KQ414889.1 exonerate:protein2genome:local exon 244424 244552 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244553 244554 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244553 244658 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244657 244658 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244659 244832 . + . KQ414889.1 exonerate:protein2genome:local exon 244659 244832 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244424 244832 160 + . alignment_id 21 ; Query gi|815893761|ref|XP_012249992.1| ; Align 244424 281 129 ; Align 244659 324 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893761|ref|XP_012249992.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 280 -> 381 Target range: 254053 -> 254448 281 : IleCysGlyThrSerLeuGluTrpGluAsnAsnAsnAlaThrAlaValLeuIleTyrS : 300 :::|||... !! !|||||| !.!.!:!:!!||| ! !:!!!!!! |||! MetCysAlaCysPhe***GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrI 254054 : atgtgtgcttgctTCTAGGAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACA : 254111 301 : erThrIleGlnIleSerCysThrPheSerValPheIleLeuCysTyrIleGlyGlnLe : 319 !..!! !! :!!:!! !..! :::...|||::::::|||||||||.!!.!. leValThrLeuValAlaValValSerAsnThrPheLeuIleCysTyrIleSerAspAr 254112 : TTGTAACACTCGTTGCTGTTGTTtctaatacatttttaatctGTTATATCAGCGACAG : 254168 320 : uLeuValAspGluAsnArgIle{V} >>>> Target Intron 1 >>>> {al} : 327 !|||..!!!::!! !:! {:} 92 bp {!!} gLeuThrGluGlnValGlnGlu{I}-+ ++{le} 254169 : GTTGACAGAACAGGTACAAGAG{A}ct.........................ag{TT} : 254285 328 : GlyGlnAlaSerTyrMetIleAsnTrpTyrTyrLeuSerArgLysHisMetArgSerL : 347 |||:!!!.! !||||||! !:!!|||||||||||| !!!:!!:!...!!:! !..!| GlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspL 254286 : GGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATT : 254344 348 : euIleLeuIleIleAlaMetSerAsnTyrProMetLysLeuMetAlaGlyLysMetVa : 366 ||||||||||||||.!! |||||| !:!::!!:!!! |||||||||::: euIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLysIlePh 254345 : TAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaaaatatt : 254401 367 : lGluMetSerLeuAlaThrPheThrAspValMetLysMetSerMet : 381 ...||||||||| !|||||| !||||||! :!!! !:!:!: eHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeu 254402 : ccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTT : 254448 vulgar: gi|815893761|ref|XP_012249992.1| 280 381 . KQ414889.1 254053 254448 + 143 M 46 138 S 0 1 5 0 2 I 0 88 3 0 2 S 1 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254054 254448 143 + . gene_id 22 ; sequence gi|815893761|ref|XP_012249992.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254054 254192 . + . KQ414889.1 exonerate:protein2genome:local exon 254054 254192 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254193 254194 . + . intron_id 1 ; splice_site "CT" KQ414889.1 exonerate:protein2genome:local intron 254193 254284 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254283 254284 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254285 254448 . + . KQ414889.1 exonerate:protein2genome:local exon 254285 254448 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254054 254448 143 + . alignment_id 22 ; Query gi|815893761|ref|XP_012249992.1| ; Align 254054 281 138 ; Align 254287 328 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893761|ref|XP_012249992.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 314 -> 376 Target range: 224472 -> 224658 315 : TyrIleGlyGlnLeuLeuValAspGluAsnArgIleValGlyGlnAlaSerTyrMetI : 334 |||.!! !..!|||!!! !! ::: ... :::||||||!.!|||||||||| TyrPheLeuSerLeuPhePheProGlnCysGluLysIleGlyGlnValSerTyrMetI 224473 : TATTTTTTATCGCTATTTTTTCCtcagtgtgaaaaaattggacaAGTGTCGTACATGA : 224530 335 : leAsnTrpTyrTyrLeuSerArgLysHisMetArgSerLeuIleLeuIleIleAlaMe : 353 ||:!!|||||| |||!!! !!!!. ! ! ! !!!!! !||||||||||||||||| leAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMe 224531 : TCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGAT : 224587 354 : tSerAsnTyrProMetLysLeuMetAlaGlyLysMetValGluMetSerLeuAlaThr : 372 |||||||! ! !!!!:||||||! ||||||!!.|||||||||:!!!!!|||.!!||| tSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThr 224588 : GTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACT : 224644 373 : PheThrAspVal : 376 ||| !|||||| PheGlyAspVal 224645 : TTCGGTGACGTA : 224658 vulgar: gi|815893761|ref|XP_012249992.1| 314 376 . KQ414889.1 224472 224658 + 138 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224473 224658 138 + . gene_id 23 ; sequence gi|815893761|ref|XP_012249992.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224473 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224473 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224473 224658 138 + . alignment_id 23 ; Query gi|815893761|ref|XP_012249992.1| ; Align 224473 315 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893761|ref|XP_012249992.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 326 -> 381 Target range: 238637 -> 238802 327 : ValGlyGlnAlaSerTyrMetIleAsnTrpTyrTyrLeuSerArgLysHisMetArgS : 346 ||||||:!!!.! !||||||! !:!!|||||||||||| !!!:!!:!...!!:! !. ValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuA 238638 : GTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCG : 238695 347 : erLeuIleLeuIleIleAlaMetSerAsnTyrProMetLysLeuMetAlaGlyLysMe : 365 .!||||||||||||||| ! |||||| !:!:|||:!!! |||||||||:! spLeuIleLeuIleIleLysArgSerAsnValValValLysValThrAlaGlyLysVa 238696 : ATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCACCGCTGGAAAAGT : 238752 366 : tValGluMetSerLeuAlaThrPheThrAspValMetLysMetSerMet : 381 ::!!.!.||||||||| !|||||| !||||||! :!!! !:!:!: lLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeu 238753 : ATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTT : 238802 vulgar: gi|815893761|ref|XP_012249992.1| 326 381 . KQ414889.1 238637 238802 + 132 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238638 238802 132 + . gene_id 24 ; sequence gi|815893761|ref|XP_012249992.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238638 238802 . + . KQ414889.1 exonerate:protein2genome:local exon 238638 238802 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238638 238802 132 + . alignment_id 24 ; Query gi|815893761|ref|XP_012249992.1| ; Align 238638 327 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893761|ref|XP_012249992.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 286 -> 338 Target range: 301686 -> 301842 287 : GluTrpGluAsnAsnAsnAlaThrAlaValLeuIleTyrSerThrIleGlnIleSerC : 306 ||||||:!!|||!:!:!!.!!! !|||:!!|||! !!:!! !|||:!: !! |||! GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerP 301687 : GAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGT : 301744 307 : ysThrPheSerValPheIleLeuCysTyrIleGlyGlnLeuLeuValAspGluAsnAr : 325 !||||||!:!:!!||||||!!!||||||||||||:!!:!!||| !!!::!! ! heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGlnValLe 301745 : TCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGGTACT : 301801 326 : gIleValGlyGlnAlaSerTyrMetIleAsnTrpTyrTyr : 338 !! ! !.!!::!::: :::......::: !|||!:! uThrTyrSerArgSerPheHisPhePheSerMetTyrPhe 301802 : TACTTACAGTAGAagtttccatttcttttcaatGTATTTC : 301842 vulgar: gi|815893761|ref|XP_012249992.1| 286 338 . KQ414889.1 301686 301842 + 106 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301687 301842 106 + . gene_id 25 ; sequence gi|815893761|ref|XP_012249992.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301687 301842 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301687 301842 106 + . alignment_id 25 ; Query gi|815893761|ref|XP_012249992.1| ; Align 301687 287 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893755|ref|XP_012249963.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 870 Query range: 2 -> 361 Target range: 204272 -> 206401 3 : LeuGlyAlaTrpProLeuProProGluSerSerLeuCysMetLysIleSerGlnArgV : 22 :!!||||||||||||:!!||| !.!.||||||! !! !! !!:!:!! !!:!|||: ValGlyAlaTrpProIleProValAsnSerSerProPheThrArgLeuValArgArgI 204273 : GTCGGTGCGTGGCCGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAA : 204330 23 : alIleArgPheIleIleIleSerLeuAlaLeuPhePheValSerProGlyPheTyrTy : 41 !! !!.! ! :!!! ! ||| .......!.:!! !||||||.!!! || leGluHisValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTy 204331 : TAGAACACGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTA : 204387 42 : rValPhePheLysGluLysSerAsnLysArgLysLeuGlnIleIleThrThrTyrIle : 60 |||||||.!.|||||||||!:!..!|||! !:::|||:!!|||:!! ! !! !:!: rValPheLeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleVal 204388 : CGTGTTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTG : 204444 61 : AsnSerPheValGlnLeuIleLysTyrIleIleIleLeuTyrArgMetLysAspIleA : 80 |||!!! !:!!|||!!!.!!|||||| !:!!||||||||||||!!: ! ! |||! AsnCysSerIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleG 204445 : AACTGCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTC : 204504 81 : rgIleLeuSerGluGluIleArgAsnAspTrpLeuHisSerThrGluGluAsnArgAr : 99 :!! !! !.!. ||||||..!||||||:!!.!.:!!|||!!:||||||||| lnLysSerLeuAsnThrIleArgArgAspTrpIleGluAlaThrAspGluAsnArgLe 204505 : AGAAGAGTTTGAACACCATCAGACGCGACTGGATAGAGGCTACGGATGAAAATCGGTT : 204561 100 : gLeuPheArgGluAsnAlaLysIleGlyGluArgValValPheIleAlaAlaPheThr : 118 !:!!||||||..!!!.||||||||||||..!||||||:!!.!.||||||||| !||| uIlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThr 204562 : GATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACT : 204618 119 : LeuTyrSerGlyGlyPheCysTyrArgThrIleLeuProLeuThrArgSerSerIleV : 138 :!!|||.!!||||||!!.|||||||||||||||||||||||| !|||.!!!!!|||| MetTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleV 204619 : ATGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCG : 204678 139 : alLeuProAsnAsnIleThrIleArgIleLeuProSerProThrTyrLeuProPheIl : 157 || !|||:!!|||:!!||||||||| ||||||!!!|||..!|||... |||.. alThrProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePh 204679 : TAACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctt : 204735 158 : eAsnGluGlnIleThrProTyrTyrGluIleIlePheValLeuGlnValLeuSerGly : 176 .||||||||| !:!!||| !!|||||||||:!!|||:!!||||||:!!:!!:!!||| eAsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGly 204736 : taacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGT : 204792 177 : PheCysIleTyrThrValPheSerGlyAlaIleGlyIleMetMetMetIleCysLeuH : 196 ||| !! !|||.!!|||.!!||||||.!! !|||!!: !:!!.!! !|||| PheValThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuH 204793 : TTTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCC : 204852 197 : isThrCysGlyLeuIleArgIleLeuMetAspLysLeuValAspLeuThrAspLysSe : 215 ||.!!|||.!!:!!:!:|||||||||:!!:!!|||:!! !! |||..!||||||:! isAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAl 204853 : ACGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGC : 204909 216 : rAsnThrSerGluGluIleIleGlnGluLysMetAlaAsnIleValGluTyrHisGly : 234 !:!!! !!!!||| !:!!:!:!!...!|||!!:|||:!!||||||||||||!!. ! aAspMetThrGluThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThr 204910 : GGACATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACG : 204966 235 : LysIleLys{Ly} >>>> Target Intron 1 >>>> {s}PheLeuSerAsnG : 243 |||||||||{!:} 905 bp {!}||||||!.!||| LysIleLys{Ar}++ ++{g}PheLeuLysAsnI 204967 : AAGATAAAG{AG}gt.........................ag{A}TTTTTAAAGAACA : 205898 244 : lyGlnGlnLeuSerGluTyrIleSerPheLeuGluLeuPheAsnGlyAlaGlyIleVa : 262 !:!! !:!!!!!|||||||||!!!!!. !|||:!! ! ..!|||.!!|||:!!|| leGluThrIleThrGluTyrIleCysLeuThrGluMetValGlyGlyThrGlyLeuVa 205899 : TTGAAACAATTACAGAGTACATTTGTTTAACCGAAATGGTGGGCGGTACGGGTCTAGT : 205955 263 : lCysLeuIleGlyTyrAlaValIleMet >>>> Target Intron 2 >>>> G : 272 |||||||:!: !||| !:!!:!!||| 66 bp | lCysLeuValTyrTyrTyrIleLeuMet++ ++G 205956 : ATGTCTCGTGTATTATTACATTCTCATGgt.........................agG : 206051 273 : luTrpGluAsnLeuAsnProValThrIleValValCysPheThrLeuLeuThrThrPh : 291 ||||||||||| !||| !!..!.!!:!!:!!|||! !.!!||||||! !! !:!!! luTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerCy 206052 : AATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTTG : 206108 292 : eThrPheThrCysTyrThrIleCysSerIleGlyGlnLeuLeuLeuAspGlu >>>> : 309 !|||||| ! !!:!! !:!!|||! !|||||||||||||||:!!|||:!! sThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : TACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt.... : 206164 310 : Target Intron 3 >>>> SerAsnAsnLeuAlaGlnThrCysValThrLeuAs : 320 81 bp !:!:!! !:!!!.! !|||! ! !|||:!!|| ++AsnHisValValGlyLeuThrSerCysThrValAs 206165 : .....................agAACCACGTCGTGGGATTGACATCTTGCACGGTGAA : 206276 321 : nTrpTyrArgLeuProMetLysGlnAlaArgTyrValValLeuMetMetIleMetSer : 339 ||||||||||||||||! !:!!!.||||||! !:!!:!!|||!!:!!: !|||||| nTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSer 206277 : TTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTCT : 206333 340 : AsnAspProMetLysLeuThrAlaValLysValMetAspValSerLeuSerThrPheS : 359 ||| !!|||!!:||||||||||||! !|||:!!.!.!!::!!||||||:!!!:!|||! AsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPheT 206334 : AATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTCA : 206393 360 : erAspIle : 361 !!|||:!! hrAspVal 206394 : CCGATGTA : 206401 vulgar: gi|815893755|ref|XP_012249963.1| 2 361 . KQ414889.1 204272 206401 + 870 M 235 705 S 0 2 5 0 2 I 0 901 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204273 206401 870 + . gene_id 1 ; sequence gi|815893755|ref|XP_012249963.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 204273 204979 . + . KQ414889.1 exonerate:protein2genome:local exon 204273 204979 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 204980 204981 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 204980 205884 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 205883 205884 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 205885 205984 . + . KQ414889.1 exonerate:protein2genome:local exon 205885 205984 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 205985 205986 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 205985 206050 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 206049 206050 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 204273 206401 870 + . alignment_id 1 ; Query gi|815893755|ref|XP_012249963.1| ; Align 204273 3 705 ; Align 205886 239 99 ; Align 206051 272 111 ; Align 206243 309 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893755|ref|XP_012249963.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 303 Query range: 2 -> 241 Target range: 232495 -> 233218 3 : LeuGlyAlaTrpProLeuProProGluSerSerLeuCysMetLysIleSerGlnArgV : 22 :!!||||||||||||! ! ! !!|||!!!||| !..!..!:!!:!! ! !!:!: MetGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysL 232496 : ATGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAAC : 232553 23 : alIleArgPheIleIleIleSerLeuAlaLeuPhePheValSerProGlyPheTyrTy : 41 !!:!:|||.!!! ! ! !|||||| !:!!! !! :!! !||| !!.!! !: euLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPh 232554 : TGTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTT : 232610 42 : rValPhePheLysGluLysSerAsnLysArgLysLeuGlnIleIleThrThrTyrIle : 60 !:!!.!.|||:!!!!:! !||| :!!..!!:!:!!:!! !||| ! !! ! ! eIleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSer 232611 : CATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGT : 232667 61 : AsnSerPheValGlnLeuIleLysTyrIleIleIleLeuTyrArgMetLysAspIleA : 80 :!!! !.!.:!! !:!:!!.||| ! !:!:||| !:! !!!.||||||! HisPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleL 232668 : CACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCC : 232727 81 : rgIleLeuSerGluGluIleArgAsnAspTrpLeuHisSerThrGluGlu<->AsnAr : 98 ! !! ! !|||:!!:!:!:!.!.||||||! !:!! !! !:!! :!!|| euTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisAr 232728 : TCTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCG : 232784 99 : gArgLeuPheArgGluAsnAlaLysIleGlyGluArgValValPheIleAlaAlaPhe : 117 | !|||.!. !:!!|||||||||:!!|||... !:!!!.!! !|||||||||||| gAspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPhe 232785 : TGATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTT : 232841 118 : ThrLeuTyrSerGlyGlyPheCysTyrArgThrIleLeuProLeuThrArgSerSerI : 137 !:!!:!!!!!|||! ! !! ! !!..!! !:!! ! !||| !! !|||!!!. CysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrP 232842 : TGCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGT : 232901 138 : leValLeuProAsn<->AsnIleThrIleArgIleLeuProSerProThrTyrLeuPr : 155 !! !:!! !||| !:! !:!!!!: ! ||||||!!! !! !||| ! heTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLy 232902 : TCTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAA : 232958 156 : oPheIleAsnGluGlnIleThrProTyrTyrGluIleIlePheValLeuGlnValLeu : 174 !.!.!!::!! ::!.!!!:!||| !!||||||!!:|||||||||||| !||| sLeuMetAspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeu 232959 : GCTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTC : 233015 175 : SerGlyPheCysIleTyrThrValPheSerGlyAlaIleGlyIleMetMetMetIleC : 194 ||||||||| !:!: !!:!!||| ! !|||||| !|||:!! :!::!!. SerGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuA 233016 : TCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAG : 233075 195 : ysLeuHisThrCysGlyLeuIleArgIleLeuMetAspLysLeuValAspLeuThrAs : 213 ..:!!|||.!!||||||! !:!:!.!:!::!!|||...||||||! !||||||..!|| laMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAs 233076 : CGATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGA : 233132 214 : pLysSerAsnThrSerGluGluIleIleGlnGluLysMetAlaAsnIleValGluTyr : 232 | !!.!... !..!|||..!:!! |||..!|||:!:!.! !|||||||||:!! pAlaLysGlyGlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHis 233133 : CGCGAAAGGGCAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCAT : 233189 233 : HisGlyLysIleLysLysPheLeuSer : 241 ||| !:::! ! !!:!!:!|||||| HisLeuArgThrLeuArgTyrLeuSer 233190 : CATTTGCGTACATTAAGGTATTTGTCT : 233218 vulgar: gi|815893755|ref|XP_012249963.1| 2 241 . KQ414889.1 232495 233218 + 303 M 94 282 G 0 3 M 45 135 G 0 3 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232496 233218 303 + . gene_id 2 ; sequence gi|815893755|ref|XP_012249963.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232496 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232496 233218 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232496 233218 303 + . alignment_id 2 ; Query gi|815893755|ref|XP_012249963.1| ; Align 232496 3 282 ; Align 232781 97 135 ; Align 232919 142 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893755|ref|XP_012249963.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 263 Query range: 2 -> 238 Target range: 208248 -> 208962 3 : LeuGlyAlaTrpProLeuProProGluSerSerLeuCysMetLysIleSerGlnArgV : 22 :!!|||:!!|||||| ! !! !!!: !!|||! !! !!!.! !..!!!.! !: IleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHisIleL 208249 : ATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCATATTC : 208306 23 : alIleArgPheIleIleIleSerLeuAlaLeuPhePheValSerProGlyPheTyrTy : 41 !!:!!!.! ! :!!! ! !!!!||| ! !|||.!!|||! !||| ! ! !: euLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGlyMetPh 208307 : TCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATGTT : 208363 42 : rValPhePheLysGluLysSerAsnLysArgLysLeuGlnIleIleThrThrTyrIle : 60 !!.!.!!.!! !! :!!..! ! ! !:!!|||:!!||| !!:!.!! ! ! eAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaLeuSer 208364 : CGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTCTGAGC : 208420 61 : AsnSerPheValGlnLeuIleLysTyrIleIleIleLeuTyrArgMetLysAspIleA : 80 !! !.!.:!! !!!!! ||||||:!:|||!!: ! !||| ! ||||||| PhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAspIleA 208421 : TTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGACATAC : 208480 81 : rgIleLeuSerGluGluIleArgAsnAspTrpLeuHis<->SerThrGluGluAsnAr : 98 ||! ! ! !||| ! :!!..! !|||||| !:!! ..! !||||||:!!|| rgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGluAspAr 208481 : GGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAGGACAG : 208537 99 : gArgLeuPheArgGluAsnAlaLysIleGlyGluArgValValPheIleAlaAlaPhe : 117 |!:!:!!.!. !!!:||||||!...!!!.!..!!:!:!!:!! ! |||..!!.! ! gLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysGlyAla 208538 : GAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCGGAGCT : 208594 118 : ThrLeuTyrSerGlyGlyPheCysTyrArgThrIleLeuProLeuThrArgSerSerI : 137 !:!!|||.!!||| ... ||| ! !|||||||||||||||..!!.!: PheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAspLysV 208595 : TTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGACAAGG : 208654 138 : leValLeuPro<->AsnAsnIleThrIleArgIleLeuProSerProThrTyrLeuPr : 155 !!||| ! ! ..!|||:!:||| !|||! ||| !! !|||..! ! ! alValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValProLysPh 208655 : TCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCTAAGTT : 208711 156 : oPheIleAsnGluGlnIleThrProTyrTyrGluIleIlePheValLeuGlnValLeu : 174 !.!!:!::!!! !:! !!:!||| !!||||||.!!!:!..!:!!|||:!!||| eIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnLeuLeu 208712 : CATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAATTGTTG : 208768 175 : SerGlyPheCysIleTyrThrValPheSerGlyAlaIleGlyIleMetMetMetIleC : 194 ||||||||| ! !:!!!.!:!! !|||||| !|||:!: !:!!:!!. SerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLeuLeuA 208769 : TCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCTGCTCG : 208828 195 : ysLeuHisThrCysGlyLeuIleArgIleLeuMetAspLysLeuValAspLeuThrAs : 213 ..:!!|||.!!||||||! !:!:!:!|||||||||..! !:!!! ! ! |||..!|| laMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeuValAs 208829 : CGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTGGTCGA : 208885 214 : pLysSerAsnThrSerGluGluIleIleGlnGluLysMetAlaAsnIleValGluTyr : 232 | ! !!.!. !..!|||:!!! !:!:.!.:!!!:!:!!||||||||||||||| ! pGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleValGluGln 208886 : TGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCGTGGAGCAG : 208942 233 : HisGlyLysIleLysLys : 238 |||! !::!:!:! ||| HisValArgValIleLys 208943 : CATGTTCGAGTGATCAAG : 208962 vulgar: gi|815893755|ref|XP_012249963.1| 2 238 . KQ414889.1 208248 208962 + 263 M 90 270 G 0 3 M 48 144 G 0 3 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208249 208962 263 + . gene_id 3 ; sequence gi|815893755|ref|XP_012249963.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208249 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208249 208962 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208249 208962 263 + . alignment_id 3 ; Query gi|815893755|ref|XP_012249963.1| ; Align 208249 3 270 ; Align 208522 93 144 ; Align 208669 141 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893755|ref|XP_012249963.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 250 Query range: 2 -> 236 Target range: 284559 -> 285282 3 : LeuGlyAlaTrpProLeuProProGluSerSerLeuCysMetLysIleSerGlnArgV : 22 :!!|||!.!||||||||| !! ! !!!! !! |||||||||... !| IleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValV 284560 : ATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGG : 284617 23 : alIleArgPheIleIleIleSerLeuAlaLeuPhePheValSerPro<->GlyPheTy : 40 ||:!! !!!.|||! ! !! !||| ! !|||.!!:!! !||| !.!.!.! alLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCy 284618 : TCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTG : 284674 41 : rTyrValPhePheLysGluLysSerAsnLysArgLysLeuGlnIleIleThrThrTyr : 59 ! |||.!! !||| ..! ! ! ! !|||:!!:!!!!:||| ! !! sThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeu 284675 : CACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTG : 284731 60 : IleAsnSerPheValGlnLeuIleLysTyrIleIleIleLeuTyrArgMetLysAspI : 79 ! ! !!!!.!.:!! ! !||||||||| !|||:!!:!!! ||| ! | SerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysI 284732 : AGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGA : 284791 80 : leArgIleLeuSerGluGluIleArgAsnAspTrp<-><-><-><->LeuHisSerTh : 94 || !! !! ! !:!!!!:|||||| |||||| ! !|||||| leGlyGlnCysValLysAspIleArgAlaAspTrpSerLeuThrLeuSerHisSerGl 284792 : TCGGCCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtca : 284848 95 : rGluGluAsnArgArgLeuPheArgGluAsnAlaLysIleGlyGluArgValValPhe : 113 ||||||...|||...:::.!.|||!!:!:!|||!:!||||||..! !:!!!.!.!! nGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIle 284849 : agaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATC : 284905 114 : IleAlaAlaPheThrLeuTyrSerGlyGlyPheCysTyrArgThrIleLeuProLeuT : 133 .!!..!||| ! !:!!|||||||||||||||! !|||! !|||:!::!!|||||| PheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuC 284906 : TTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGT : 284965 134 : hrArgSerSerIleValLeuProAsnAsnIleThrIleArgIleLeuProSerProTh : 152 !! ! ! !!! ! !:!! !:!!||| |||:!:||| !! ! !!! !|||! ysThrValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIl 284966 : GCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGAT : 285022 153 : rTyrLeuProPheIleAsnGluGlnIleThrProTyrTyrGluIleIlePheValLeu : 171 !|||! ! !.!!:!!:!! !!::! !!:!|||! !:!||||||:!: !!:!! eTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMet 285023 : CTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATG : 285079 172 : GlnValLeuSerGlyPheCysIleTyrThrValPheSerGlyAlaIleGlyIleMetM : 191 ||| !|||:!!!.!||| !||||||:!!||| ! !|||||| !.!!:!: GlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaA 285080 : CAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTG : 285139 192 : etMetIleCysLeuHisThrCysGlyLeuIleArgIleLeuMetAspLysLeuValAs : 210 :!!.!! !:!!|||..!||||||! !.!!|||||||||:!! ||||||! ! ! laValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLy 285140 : CTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAA : 285196 211 : pLeuThrAsp<-><->LysSerAsnThrSerGluGluIleIleGlnGluLysMetAla : 227 |||..!||| |||.!!!..! !.!! !...! !:!!:!!::!:!!!.! sLeuValAspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuGly 285197 : GCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGA : 285253 228 : AsnIleValGluTyrHisGlyLysIle : 236 :!!|||:!!|||:!!||| !|||||| AspIleIleGluHisHisLeuLysIle 285254 : GATATCATCGAGCATCATCTGAAGATA : 285282 vulgar: gi|815893755|ref|XP_012249963.1| 2 236 . KQ414889.1 284559 285282 + 250 M 35 105 G 0 3 M 53 159 G 0 12 M 123 369 G 0 6 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284560 285282 250 + . gene_id 4 ; sequence gi|815893755|ref|XP_012249963.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284560 285282 . + . KQ414889.1 exonerate:protein2genome:local exon 284560 285282 . + . insertions 21 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284560 285282 250 + . alignment_id 4 ; Query gi|815893755|ref|XP_012249963.1| ; Align 284560 3 105 ; Align 284668 38 159 ; Align 284839 91 369 ; Align 285214 214 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893755|ref|XP_012249963.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 224 Query range: 2 -> 236 Target range: 274419 -> 275130 3 : LeuGlyAlaTrpProLeuProProGluSerSerLeuCysMetLysIleSerGlnArgV : 22 :!!||||||||||||||| !! !! !!!!!! !! ! ::!||| !..!!.!: IleGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLeuSerHisL 274420 : ATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACC : 274477 23 : alIleArgPheIleIleIleSerLeuAlaLeuPhePheValSerProGlyPheTyrTy : 41 ::::: |||::: !!!!!!! !|||! ! !|||! !|||.!!.!.!:!:! euLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIlePheHi 274478 : ttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCA : 274534 42 : rValPhePheLysGluLysSerAsnLysArgLysLeuGlnIleIleThrThrTyrIle : 60 !:!!.!..!. !!!::!!||| ! ! ! !||||||:!!:!::!! ! !! ! ! sIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGly 274535 : CATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGT : 274591 61 : AsnSerPheValGlnLeuIleLysTyrIleIleIleLeuTyrArgMetLysAspIleA : 80 :!!!!!|||:!! ! !|||!!.|||! !! :!:||| |||! |||!!:|||| HisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleA 274592 : CACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATAC : 274651 81 : rgIleLeuSerGluGluIleArgAsnAspTrp<->LeuHisSerThrGluGluAsnAr : 98 || !! ! !|||.!.!!:!:!!..|||||| :!! !!!! ! !|||:!!!: rgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAspGl 274652 : GCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCA : 274708 99 : gArgLeuPheArgGluAsnAlaLysIleGlyGluArgValValPheIleAlaAlaPhe : 117 !!:!:!!.!. !:!!|||||||||||||||... !|||!.!.!!.!!..!||| nGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAla 274709 : ACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCG : 274765 118 : ThrLeuTyrSerGlyGlyPheCysTyrArgThrIleLeuProLeuThrArgSerSerI : 137 !:!! ! !!!|||! !.!!|||||| !!..!||| ! !!!!!|||! !..!!!!: PheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGlnThrV 274766 : TTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCG : 274825 138 : leValLeuProAsnAsnIle<->ThrIleArgIleLeuProSerProThrTyrLeuPr : 155 !! !:!! !|||.!.! ! |||:!:!.!!!:||||||!!! !.!!||| ! alGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLysLy 274826 : TTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAA : 274882 156 : oPheIleAsnGluGlnIleThrProTyrTyrGluIleIlePheValLeuGlnValLeu : 174 !.!!:!! ! !.!.! !:!||| !!||||||:!!.!!!.!! !||| !!:!! sIleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnPheVal 274883 : GATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTG : 274939 175 : SerGlyPheCysIleTyrThrValPheSerGlyAlaIleGlyIleMetMetMetIleC : 194 ||||||||| !:!: !!:!! ! !||||||.!!.!!:!! :!!.!!. SerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheA 274940 : TCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCG : 274999 195 : ysLeuHisThrCysGlyLeuIleArgIleLeuMetAspLysLeuValAspLeuThrAs : 213 .. !|||.!!! !|||! !:!:!!!:!:|||||| !:!!..!!!:!!!..!:! laAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheValAs 275000 : CGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAA : 275056 214 : pLysSer<->AsnThrSerGluGluIleIleGlnGluLysMetAlaAsnIleValGlu : 231 ! ! ||| :!: ::::::...::: ...:!!!!:!.! :!!|||||| nHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValValValGlu 275057 : TCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAA : 275113 232 : TyrHisGlyLysIle : 236 :!!||| !!:!:!! HisHisLeuArgVal 275114 : CATCATCTGAGGGTA : 275130 vulgar: gi|815893755|ref|XP_012249963.1| 2 236 . KQ414889.1 274419 275130 + 224 M 88 264 G 0 3 M 53 159 G 0 3 M 72 216 G 0 3 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274420 275130 224 + . gene_id 5 ; sequence gi|815893755|ref|XP_012249963.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274420 275130 . + . KQ414889.1 exonerate:protein2genome:local exon 274420 275130 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274420 275130 224 + . alignment_id 5 ; Query gi|815893755|ref|XP_012249963.1| ; Align 274420 3 264 ; Align 274687 91 159 ; Align 274849 144 216 ; Align 275068 216 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893755|ref|XP_012249963.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 219 Query range: 2 -> 236 Target range: 262885 -> 263596 3 : LeuGlyAlaTrpProLeuProProGluSerSerLeuCysMetLysIleSerGlnArgV : 22 :!!||||||||||||||| !! !!..!! !||| ! ::!|||! ! ! !: IleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPheL 262886 : ATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTC : 262943 23 : alIleArgPheIleIleIleSerLeuAlaLeuPhePheValSerProGlyPheTyrTy : 41 !!:!!! ! !!:!! ! !!!!||| !|||! ! !|||! !|||..!.!. !:! euLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeuHi 262944 : TCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCA : 263000 42 : rValPhePheLysGluLysSerAsnLysArgLysLeuGlnIleIleThrThrTyrIle : 60 !:!! !!.!.:!!! :!!!:! ! ! ! !|||||||||:!!:!! ! !! ! ! sIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGly 263001 : TATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGT : 263057 61 : AsnSerPheValGlnLeuIleLysTyrIleIleIleLeuTyrArgMetLysAspIleA : 80 .!.!!!|||||| :!!|||!!.|||! ! :!:||| !!.!! |||||||||! GlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleG 263058 : CAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATAC : 263117 81 : rgIleLeuSerGluGluIleArgAsnAspTrpLeuHisSerThrGlu<->GluAsnAr : 98 :! !! ! !:!!.!.:!:!:!.!.||||||! ! ! !|||..! |||:!!!: lnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAspGl 263118 : AAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCA : 263174 99 : gArgLeuPheArgGluAsnAlaLysIleGlyGluArgValValPheIleAlaAlaPhe : 117 !|||:!!.!.! !:!!||||||||| !|||... !|||!.! ! !..!|||.!! nArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIle 263175 : ACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATC : 263231 118 : ThrLeuTyrSerGlyGlyPheCysTyrArgThrIleLeuProLeuThrArgSerSerI : 137 !:!! ! !!!.!! !.!.||| ! !! !:!! ! !!!!!|||! !..! !| PheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnValI 263232 : TTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGA : 263291 138 : leValLeuProAsnAsnIleThrIle<->ArgIleLeuProSerProThrTyrLeuPr : 155 ||! ! ! !|||.!.! !! !||| |||!!:||||||!!!|||..!||| ! leGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLysGl 263292 : TCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGA : 263348 156 : oPheIleAsnGluGlnIleThrProTyrTyrGluIleIlePheValLeuGlnValLeu : 174 !.!!||| ! .!.! !.!||| !!||||||.!!.!!!.! !||| !!||| uIleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeu 263349 : GATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTG : 263405 175 : SerGlyPheCysIleTyrThrValPheSerGlyAlaIleGlyIleMetMetMetIleC : 194 ||||||||| !:!! !.!!..! ! !||||||.!!|||!!:! !:!!.!!. SerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheA 263406 : TCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCG : 263465 195 : ysLeuHisThrCysGlyLeuIleArgIleLeuMetAspLysLeuValAspLeuThrAs : 213 .! !|||.!!||||||! !:!:!.!:!:||||||..! !:!!..!!!:!!!..!:! laGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAs 263466 : CCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAA : 263522 214 : pLysSer<->AsnThrSerGluGluIleIleGlnGluLysMetAlaAsnIleValGlu : 231 !:!!||| :!! !!:!:!!.!.:!! ! :!!!!:!.! ||||||||| nGlnSerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValGlu 263523 : CCAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAA : 263579 232 : TyrHisGlyLysIle : 236 :!!||| !!:!:!! HisHisLeuArgVal 263580 : CATCATCTGAGAGTT : 263596 vulgar: gi|815893755|ref|XP_012249963.1| 2 236 . KQ414889.1 262885 263596 + 219 M 93 279 G 0 3 M 50 150 G 0 3 M 70 210 G 0 3 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262886 263596 219 + . gene_id 6 ; sequence gi|815893755|ref|XP_012249963.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262886 263596 . + . KQ414889.1 exonerate:protein2genome:local exon 262886 263596 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262886 263596 219 + . alignment_id 6 ; Query gi|815893755|ref|XP_012249963.1| ; Align 262886 3 279 ; Align 263168 96 150 ; Align 263321 146 210 ; Align 263534 216 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893755|ref|XP_012249963.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 215 Query range: 271 -> 376 Target range: 291368 -> 293248 272 : GluTrpGluAsnLeuAsnProValThrIleValValCysPheThrLeuLeuThrThrP : 291 |||||||||!:! !:!! !!:!! !|||:!!..!! ! !!||||||||||||:!!| GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 292 : heThrPheThrCysTyrThrIleCysSerIleGlyGlnLeuLeuLeuAspGlu >>> : 309 ||||||||!.! ! !.!!|||! !:!!|||:!!|||||||||! :!! heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln++ 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAGgt... : 291482 310 : > Target Intron 1 >>>> SerAsnAsnLeuAlaGlnThrCysValThrLeuA : 320 913 bp .!!!:!.!.:!!|||!!..!!! ! ! ! !. ++GlySerGluIleAlaHisAlaSerTyrAspThrG 291483 : ......................agGGTAGTGAAATCGCGCACGCTTCCTACGATACAG : 292426 321 : snTrpTyrArgLeuProMetLysGlnAlaArgTyrValValLeuMetMetIleMetSe : 339 !.||||||!.!||||||! ::!:!!|||||| !!:!!||||||:!!:!: !!!:!! luTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIleTh 292427 : AATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAAC : 292483 340 : rAsnAspProMetLysLeuThrAlaValLysValMetAspValSerLeuSerThrPhe : 358 !!!. !!|||!!:||||||||||||! !|||:!!.!.! !:!!||||||!:!|||||| rLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPhe 292484 : GAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTT : 292540 359 : SerAsp >>>> Target Intron 2 >>>> IleMetLysAlaSerMetGlyTy : 368 .!!! ! 652 bp :!::!!|||:!!|||:!:! !|| GlyAla++ ++ValLeuLysSerSerValValTy 292541 : GGCGCTgt.........................agGTGCTGAAATCGTCGGTAGTTTA : 293222 369 : rLeuAsnMetLeuArgAsnValThr : 376 |:!!||||||||||||!.!|||||| rMetAsnMetLeuArgThrValThr 293223 : CATGAACATGCTACGAACCGTCACT : 293248 vulgar: gi|815893755|ref|XP_012249963.1| 271 376 . KQ414889.1 291368 293248 + 215 M 37 111 5 0 2 I 0 909 3 0 2 M 52 156 5 0 2 I 0 648 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 293248 215 + . gene_id 7 ; sequence gi|815893755|ref|XP_012249963.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292548 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292548 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 292549 292550 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 292549 293200 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 293199 293200 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 293201 293248 . + . KQ414889.1 exonerate:protein2genome:local exon 293201 293248 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 293248 215 + . alignment_id 7 ; Query gi|815893755|ref|XP_012249963.1| ; Align 291369 272 111 ; Align 292393 309 156 ; Align 293201 361 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893755|ref|XP_012249963.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 271 -> 361 Target range: 301686 -> 302036 272 : GluTrpGluAsnLeuAsnProValThrIleValValCysPheThrLeuLeuThrThrP : 291 ||||||:!!||| !:!! !!:!!.!!!!::!!..!! !|||||||||||||||:!!| GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerP 301687 : GAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGT : 301744 292 : heThrPheThrCysTyrThrIleCysSerIleGlyGlnLeuLeuLeuAspGluSerAs : 310 ||||||||!.! !:!! !.!!|||! !||||||:!!:!!|||! !!!::!! ! heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGlnValLe 301745 : TCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGGTACT : 301801 311 : nAsnLeuAlaGln{T} >>>> Target Intron 1 >>>> {hr}CysValThr : 318 !!.!! !::!::!{|} 80 bp {||}! ! ! uThrTyrSerArg{T}++ ++{hr}SerTyrGlu 301802 : TACTTACAGTAGA{a}gt.........................ag{CA}TCGTACGAG : 301905 319 : LeuAsnTrpTyrArgLeuProMetLysGlnAlaArgTyrValValLeuMetMetIleM : 338 :!!:!!||||||!.!|||||| !|||::!||| ! !!:!!:!!|||:!:! :!:! IleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValI 301906 : ATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGA : 301965 339 : etSerAsnAspProMetLysLeuThrAlaValLysValMetAspValSerLeuSerTh : 357 !:|||.!. !!||| !||||||||||||! !|||:!!!!:|||:!!||||||!:!|| leSerGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnTh 301966 : TATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATAC : 302022 358 : rPheSerAspIle : 361 |||||||..!:!! rPheSerSerVal 302023 : ATTCAGCTCTGTA : 302036 vulgar: gi|815893755|ref|XP_012249963.1| 271 361 . KQ414889.1 301686 302036 + 170 M 43 129 S 0 1 5 0 2 I 0 76 3 0 2 S 1 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301687 302036 170 + . gene_id 8 ; sequence gi|815893755|ref|XP_012249963.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301687 301816 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301816 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301817 301818 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 301817 301896 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301895 301896 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301897 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301897 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301687 302036 170 + . alignment_id 8 ; Query gi|815893755|ref|XP_012249963.1| ; Align 301687 272 129 ; Align 301899 316 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893755|ref|XP_012249963.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 308 -> 361 Target range: 305624 -> 305783 309 : SerAsnAsnLeuAlaGlnThrCysValThrLeuAsnTrpTyrArgLeuProMetLysG : 328 |||!:!!:!:!!!.! !:!!||| !!! !:!!!:!||||||!.!||||||! ||| SerSerSerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysT 305625 : AGCAGTAGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGA : 305682 329 : lnAlaArgTyrValValLeuMetMetIleMetSerAsnAspProMetLysLeuThrAl : 347 ! !!.! !:!!:!!|||!!:!!: !||||||!:!:!!||| |||:!!!:!|| hrIleHisGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAl 305683 : CGATACATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGC : 305739 348 : aValLysValMetAspValSerLeuSerThrPheSerAspIle : 361 |! !||||||:!:|||:!!|||||||||||||||.!!:!!:!: aGlyLysValValAspLeuSerLeuSerThrPheGlyAsnVal 305740 : TGGTAAAGTAGTTGATTTATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: gi|815893755|ref|XP_012249963.1| 308 361 . KQ414889.1 305624 305783 + 123 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305625 305783 123 + . gene_id 9 ; sequence gi|815893755|ref|XP_012249963.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305625 305783 123 + . alignment_id 9 ; Query gi|815893755|ref|XP_012249963.1| ; Align 305625 309 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893755|ref|XP_012249963.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 296 -> 361 Target range: 214827 -> 215022 297 : ThrIleCysSerIleGlyGlnLeuLeuLeuAspGluSerAsnAsnLeuAlaGlnThrC : 316 |||||| ||| ! ! :!!:!!|||.!.:!!!!!!!.!!.:!!!.!:!!..!! ThrIleLeuSerSerLeuCysIleMetLeuGlnGlnCysLysLysValGlyGluValS 214828 : acgattttATCATCATTATGTATTATGTTACAACAGTGCAAAAAGGTCGGAGAAGTAT : 214885 317 : ysValThrLeuAsnTrpTyrArgLeuProMetLysGlnAlaArgTyrValValLeuMe : 335 !! !:!!.!.||||||||||||||| !!.:!! !! !! ! !:!!|||!! erTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCysCysIleLeuIl 214886 : CGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGAT : 214942 336 : tMetIleMetSerAsnAspProMetLysLeuThrAlaValLysValMetAspValSer : 354 :||| !|||||||||... !!:!:|||!!!||||||! !!!.:!!:!:!!::!!||| eMetAlaMetSerAsnSerSerValLysPheThrAlaGlyAsnMetValGluLeuSer 214943 : CATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCT : 214999 355 : LeuSerThrPheSerAspIle : 361 :!!||||||||||||..!:!! IleSerThrPheSerSerVal 215000 : ATCAGCACTTTCAGCAGTGTA : 215022 vulgar: gi|815893755|ref|XP_012249963.1| 296 361 . KQ414889.1 214827 215022 + 111 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214828 215022 111 + . gene_id 10 ; sequence gi|815893755|ref|XP_012249963.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214828 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214828 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214828 215022 111 + . alignment_id 10 ; Query gi|815893755|ref|XP_012249963.1| ; Align 214828 297 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893755|ref|XP_012249963.1| PREDICTED: odorant receptor Or2-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 309 -> 361 Target range: 219515 -> 219671 310 : AsnAsnLeuAlaGlnThrCysValThrLeuAsnTrpTyrArgLeuProMetLysGlnA : 329 ......:::...::: !! !:!!.!.|||||||||||| !! |||:!! ArgLysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysL 219516 : aggaaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAA : 219573 330 : laArgTyrValValLeuMetMetIleMetSerAsnAspProMetLysLeuThrAlaVa : 348 !! !!:: !||||||! !!: !|||||||||..! !!!!:||||||||||||! ysLeuTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGl 219574 : AGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGG : 219630 349 : lLysValMetAspValSerLeuSerThrPheSerAspIle : 361 !!!.:!!:!:!!::!!|||:!!|||||||||!!!|||:!: yAsnMetValGluLeuSerIleSerThrPheThrAspVal 219631 : AAATATGGTCGAATTGTCTATCAGCACTTTTACCGACGTG : 219671 vulgar: gi|815893755|ref|XP_012249963.1| 309 361 . KQ414889.1 219515 219671 + 101 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219516 219671 101 + . gene_id 11 ; sequence gi|815893755|ref|XP_012249963.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219516 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219516 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219516 219671 101 + . alignment_id 11 ; Query gi|815893755|ref|XP_012249963.1| ; Align 219516 310 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893753|ref|XP_003484570.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1405 Query range: 0 -> 401 Target range: 194111 -> 198624 1 : MetSerGluLysIleLysAsnIleIleTyrArgAsnAspHisTyrLysSerAspSerG : 20 :!:...||| |||... ! !|||||||||! !:!!||||||! !|||!!!| ValGluGluIleAlaLysLysSerAsnTyrArgAsnValAsnTyrLysLeuAspThrG 194112 : GTCgaagaaatcgcgaagaaatcgAATTACCGCAACGTCAATTACAAATTGGACACCG : 194169 21 : luTyrValMetHisIleAlaLysThrLeuLeuThrLeuIleGlyIleTrpProArgLy : 39 |||||!.!:!:!..:!!||||||.!!|||||||||! !||||||||||||||||||:! luTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProArgGl 194170 : AGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAAGGGA : 194226 40 : sAspThrPheLeuAspAsnValLysMetTyrIleGlnThrValThrIlePheIleLeu : 58 !|||:!!.!!! !|||!..|||::!:!!!:! !||||||! !..!:!!||| !||| uAspSerLeuArgAspArgValArgLeuPheAlaGlnThrGlyValValPheAlaLeu 194227 : GGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTTCGCTTTG : 194283 59 : MetCysPheLeuLeuIleProHisValIleTyrThrTyrPheAspCysGluAspLeuT : 78 |||||||||||||||:!!|||||||||||||||||||||||||||||||||||||||| MetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCysGluAspLeuT 194284 : ATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAGGATCTGA : 194343 79 : hrLysTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleIleLysPh : 97 ||!:!||||||||||||||||||||||||||||||||||||||||||||||||||||| hrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleIleLysPh 194344 : CGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCATCAAGTT : 194400 98 : eTrpThrLeuIlePheAsnArgLysGluIleArgPheCysLeuAsnGluIleGluIle : 116 |||||||:!!||| ! ||||||||||||||||||||||||||| |||!!:|||! eTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGluMetGluThr 194401 : CTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGATGGAGACG : 194457 117 : GlnTyrLysAspValLysCysGluGluAspArgLeuIleMetLeuAsnCysAlaLysI : 136 ||||||!:!||||||:!!|||||||||||||||! !:!:||| !||||||||||||| GlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsnCysAlaLysI 194458 : CAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGCGCGAAAA : 194517 137 : leGlyArgTyrPheThrMetValTyrLeuAlaLeuGlyTyrSerGlyAlaLeuProTy : 155 ||||||||!:!||||||! :!!||||||!.!|||..!|||.!!|||||||||||||| leGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTy 194518 : TCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTTTGCCGTA : 194574 156 : rHisIleIleLeuProLeuIleSerGluArgIleValLysAlaAspAsnThrThrGln : 174 |||||||||||||||||||!!:||||||||||||||||||! !||||||!:!|||||| rHisIleIleLeuProLeuMetSerGluArgIleValLysGluAspAsnSerThrGln 194575 : CCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAACAGTACTCAG : 194631 175 : IleProLeuProTyrLeuSerAspTyrValPhePheValIleGluAspSerProIleT : 194 |||||||||||||||||||||:!!||||||||||||!.!||||||||||||||||||| IleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAspSerProIleT 194632 : ATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGACTCGCCGATTT : 194691 195 : yrGluIleThrPheValValGlnMetCysIleSerCysIleIleMetThrThrAsnTy : 213 ||||||||||||||||| !|||!!: |||||| !!||||||:!!:!!||||||! yrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuSerThrAsnCy 194692 : ACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGTCGACGAATTG : 194748 214 : rGlyIleTyrSerLeuIleAlaSerIleThrMetHisSerCysCysLeuPheGluVal : 232 !|||||||||||||||:!!|||!!!|||! !||||||!!!||| !!|||||||||||| sGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGlyLeuPheGluVal 194749 : TGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTTGTTCGAAGTG : 194805 233 : ThrSerArgArgIleGluGluLeuArgLysTrpAspLysArgAspLeuHisAspArgI : 252 ||||||||||||!!:||| :!! ! ! ! !!:!|||:!!!..! !|||: ThrSerArgArgMetGluThrIleSerValProThrGlyLysAspIleArgGlyArgL 194806 : ACCAGCAGAAGGATGGAGACTATTTCTGTGCCCACTGGGAAGGATATTCGGGGTAGAC : 194865 253 : leAlaAspIleValGlnCysHisLeuLysAlaIle{Gl} >>>> Target Intro : 264 !! !|||:!!||||||! !|||||||||||||||{:!} 1391 bp euArgAspValValGlnPheHisLeuLysAlaIle{Ly}++ 194866 : TTAGGGACGTCGTTCAGTTTCATCTGAAAGCAATT{AA}gt................. : 194905 265 : n 1 >>>> {u}TyrSerAlaValIleGlyLysSerLeuSerPheValPheLeuSer : 279 {!}::!:!!! !:!!|||! !|||:!!|||!:!.!!|||||||||||| ++{s}PheAlaGluMetIleGluLysAlaLeuAsnIleValPheLeuSer 194906 : ........ag{a}tTCGCTGAAATGATCGAGAAAGCACTGAACATCGTGTTTCTATCA : 196337 280 : GluMetValGlyCysThrIleValIleCysPheLeuGluPheGlyValIleMet >> : 298 ||||||:!!||||||||||||:!!|||||||||||||||!:!|||||||||:!! GluMetLeuGlyCysThrIleIleIleCysPheLeuGluTyrGlyValIleVal++ 196338 : GAGATGCTTGGCTGCACTATCATCATATGTTTCCTGGAATACGGTGTAATCGTGgt.. : 196396 299 : >> Target Intron 2 >>>> GluTrpGluAspHisArgThrPheSerThrIle : 308 65 bp !!:|||! ||||||!:!|||.!!|||! !!!: ++AspTrpAlaAspHisLysThrLeuSerMetMet 196397 : .......................agGATTGGGCCGATCACAAGACACTCAGCATGATG : 196489 309 : ThrTyrPheValLeuMetThrSerMetPheValAsnValPheIleIleSerPheIleG : 328 ||||||||||||||||||||||||!!:||||||||||||||||||||||||||||||| ThrTyrPheValLeuMetThrSerIlePheValAsnValPheIleIleSerPheIleG 196490 : ACGTACTTCGTTCTGATGACATCGATATTCGTGAACGTGTTCATAATCTCGTTCATCG : 196549 329 : lyAspArgLeuLysGlnGlu >>>> Target Intron 3 >>>> SerGluArg : 337 |||||||||||||||||! 82 bp ||||||||| lyAspArgLeuLysGlnVal++ ++SerGluArg 196550 : GTGATCGTCTTAAACAAGTggt.........................agAGCGAAAGA : 196658 338 : IleGlyGluThrSerTyrSerLeuProTrpTyrAspPheProLeuAsnGluAlaLysA : 357 :!!|||||||||||||||! !:!!||||||||||||.!!||| !:!! !||||||| ValGlyGluThrSerTyrPheMetProTrpTyrAspLeuProAspAspLeuAlaLysA 196659 : GTAGGCGAAACGTCGTACTTCATGCCGTGGTACGATCTTCCGGACGATTTAGCCAAGA : 196718 358 : snValArgThrIleIleLeuArgThrArgLeuProSerSerLeuSerGlyAlaLysIl : 376 ||:!!||||||||||||||||||.!!!!!! !||||||||||||||||||||||||:! snIleArgThrIleIleLeuArgAlaSerHisProSerSerLeuSerGlyAlaLysLe 196719 : ATATAAGAACGATCATACTAAGAGCCAGTCATCCGTCAAGTTTGTCTGGCGCCAAGTT : 196775 377 : eLeuAspLeuSerLeuGlnAlaPheCysAsp >>>> Target Intron 4 >>>> : 387 :!!!||||||||||||||||||||||||||| 1772 bp uPheAspLeuSerLeuGlnAlaPheCysAsp++ 196776 : GTTCGATCTTTCGCTTCAAGCATTTTGCGACgt......................... : 196810 388 : ValValLysThrSerAlaAlaTyrPheAsnValLeuArgAlaMet : 401 ||| !|||||||||||||||||||||||| |||:::|||||| ++ValCysLysThrSerAlaAlaTyrPheAsnPheLeuGlnAlaMet 196811 : agGTTTGCAAAACTTCTGCGGCctacttcaattttctacaagCAATG : 198624 vulgar: gi|815893753|ref|XP_003484570.2| 0 401 . KQ414889.1 194111 198624 + 1405 M 263 789 S 0 2 5 0 2 I 0 1387 3 0 2 S 1 1 M 33 99 5 0 2 I 0 61 3 0 2 M 37 111 5 0 2 I 0 78 3 0 2 M 52 156 5 0 2 I 0 1768 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194112 198624 1405 + . gene_id 1 ; sequence gi|815893753|ref|XP_003484570.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 194112 194902 . + . KQ414889.1 exonerate:protein2genome:local exon 194112 194902 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 194903 194904 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 194903 196293 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 196292 196293 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 196294 196393 . + . KQ414889.1 exonerate:protein2genome:local exon 196294 196393 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 196394 196395 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 196394 196458 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 196457 196458 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 196459 196569 . + . KQ414889.1 exonerate:protein2genome:local exon 196459 196569 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 196570 196571 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 196570 196651 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 196650 196651 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 196652 196807 . + . KQ414889.1 exonerate:protein2genome:local exon 196652 196807 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 196808 196809 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 196808 198579 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 198578 198579 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 198580 198624 . + . KQ414889.1 exonerate:protein2genome:local exon 198580 198624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194112 198624 1405 + . alignment_id 1 ; Query gi|815893753|ref|XP_003484570.2| ; Align 194112 1 789 ; Align 196295 265 99 ; Align 196459 298 111 ; Align 196652 335 156 ; Align 198580 387 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893753|ref|XP_003484570.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 8 -> 239 Target range: 259736 -> 260438 9 : IleTyrArgAsnAspHisTyrLysSerAspSerGluTyrValMetHisIleAlaLysT : 28 :!:!:! !.!. !!:!! ||| !!|||!!:||| !:!:!!..!! !::! ValPheValGluThrSerPheThrSerHisSerAspTyrSerLeuGlnPheAsnArgT 259737 : GTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCCAATTTAATCGAT : 259794 29 : hrLeuLeuThrLeuIleGlyIleTrpPro<-><->ArgLysAspThrPheLeuAspAs : 45 !!!!|||! !! !|||||| !|||||| !... ||| |||!!:!! rpPheLeuLysProIleGlyAlaTrpProProSerSerSerThrThrArgLeuGluLy 259795 : GGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCACGACCAGACTCGAGAA : 259851 46 : nValLysMetTyrIleGlnThrValThrIlePheIleLeuMetCysPheLeuLeuIle : 64 .:!!! !|||! !! ! !!! ! !!:!! ! !!!: !! !|||||| sIleIleSerValIleLeuIlePheIleCysTyrSerThrIleLeuValThrLeuIle 259852 : GATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATACTGGTCACCCTGATC : 259908 65 : ProHisValIleTyrThrTyrPheAspCysGluAspLeuThrLysTyrMetLysValI : 84 ||| !|||:!!:!!! ! .!!!!: |||..!||| !! ! ! ! !||||||: ProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrMetLysThrLysValL 259909 : CCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGAAGGTGC : 259968 85 : leAlaAlaGlnValPheSerLeuLeuAlaIleIleLysPheTrpThrLeuIlePheAs : 103 !!!.! !!! ..! !!!!!!!:!!!.! !|||!!.!:! ||||||:!:!!.!. euGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrThrThrLeuLeuLeuAr 259969 : TCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTGTTGAG : 260025 104 : nArgLysGluIleArgPheCysLeuAsnGluIleGluIleGlnTyrLysAspValLys : 122 . !!!:!!!:|||! ! !|||:!!.!..!.:!:|||! !.!.!::!:! !:!!! ! gGlyArgAspIleLeuSerCysValGluHisValGluAsnAspTrpArgIleIleThr 260026 : AGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGAATTATAACG : 260082 123 : CysGluGluAspArgLeuIleMetLeuAsnCysAlaLysIleGlyArgTyrPheThrM : 142 ! |||:!!|||!:! !:!:||||||!..! !||||||.!!||||||||| !!.!! ArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgTyrValAlaA 260083 : AGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGATACGTCGCTG : 260142 143 : etValTyrLeuAlaLeuGlyTyrSerGlyAlaLeuProTyrHisIleIleLeuProLe : 161 !! ! !|||!!!! ! ! .!!|||!.!||| !!:! !:!::!! ! !|| laSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCysLeuValThrValLe 260143 : CCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTCACGGTGTT : 260199 162 : uIleSerGluArgIleValLysAlaAspAsnThrThrGlnIleProLeuProTyrLeu : 180 |! !!!!||| !||| ! !!.!:!!.!.|||! ! :!!! !||| ! ! ! uSerThrGluValIleGlnValGlyAsnGluThrArgIleValHisLeuLeuProCys 260200 : GAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTGCCGTGC : 260256 181 : SerAspTyrValPhePheVal<->IleGluAspSerProIleTyrGluIleThrPheV : 199 :!!! ||| ! .!.:!! :!:.!.|||||||||!!: !!||||||..!.!!| AlaValTyrLysGluLeuIleAsnValAsnAspSerProMetAsnGluIleValLeuV 260257 : GCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGATTGTTCTCG : 260316 200 : alValGlnMetCysIleSerCysIleIleMetThrThrAsnTyrGlyIleTyrSerLe : 218 ||||||||.!. ! .!!! !|||:!:! :!!!:!!.! !||||||!:!||||| alValGlnPheValSerGlyPheIleValAsnSerSerThrValGlyIlePheSerLe 260317 : TCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTTCAGTCT : 260373 219 : uIleAlaSerIleThrMetHisSerCysCysLeuPheGluValThrSerArgArgIle : 237 | ||| !:!:||| |||:!!||| !!! !!!..!.||| !! !..! !!||| uAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMetGluTrpIle 260374 : CGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAATGGATC : 260430 238 : GluGlu : 239 !||| ThrGlu 260431 : ACGGAG : 260438 vulgar: gi|815893753|ref|XP_003484570.2| 8 239 . KQ414889.1 259736 260438 + 204 M 29 87 G 0 6 M 150 450 G 0 3 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259737 260438 204 + . gene_id 2 ; sequence gi|815893753|ref|XP_003484570.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259737 260438 . + . KQ414889.1 exonerate:protein2genome:local exon 259737 260438 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259737 260438 204 + . alignment_id 2 ; Query gi|815893753|ref|XP_003484570.2| ; Align 259737 9 87 ; Align 259830 38 450 ; Align 260283 188 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893753|ref|XP_003484570.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 184 Query range: 13 -> 239 Target range: 266616 -> 267303 14 : HisTyrLysSerAspSerGluTyrValMetHisIleAlaLysThrLeuLeuThrLeuI : 33 :!! !!.||| |||!!:||| !:!!!!.:!: !::! !!!!|||! !! !| AsnLeuAsnSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 266617 : AATCTAAACAGTCTGAGCGATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTA : 266674 34 : leGlyIleTrpPro<-><->ArgLysAspThrPheLeuAspAsnValLysMetTyrIl : 50 ||||| !|||||| ! :!! |||!!:...:!! ||| leGlyAlaTrpProProLeuSerLeuThrSerLysLeuGluArgIleValSerTyrAl 266675 : TAGGCGCTTGGCCGCCGTTGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGC : 266731 51 : eGlnThrValThrIlePheIleLeuMetCysPheLeuLeuIleProHisValIleTyr : 69 ! !! !|||! ! !!:! !! !!!: ||| !:!!|||||| !:!!.!!:!! aLeuIleValIleCysTyrCysSerIleLeuPheThrValIleProCysLeuPheHis 266732 : TTTGATCGTCATCTGCTACTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCAT : 266788 70 : ThrTyrPheAspCysGluAspLeuThrLysTyrMetLysValIleAlaAlaGlnValP : 89 ! !.!.!!: !|||..!:!! !! ! ! :!!||||||.!!!.! !!! ! ! LeuValLeuGluAspGluSerIleArgThrLysValLysValPheGlyProLeuSerH 266789 : CTCGTTCTGGAGGACGAGAGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCC : 266848 90 : heSerLeuLeuAlaIleIleLysPheTrpThrLeuIlePheAsnArgLysGluIleAr : 108 !!!!!!!:!!!.! !|||!!.!:! ||||||:!:.!...!!!!||||||||||| isTrpPheValGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleAr 266849 : ATTGGTTCGTCGGAGGAATTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACG : 266905 109 : gPheCysLeuAsnGluIleGluIleGlnTyrLysAspValLysCysGluGluAspArg : 127 | !|||:!!.!..!.!!::!!! !.!.!::!:! !|||! ! !||||||!:! gGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAspLys 266906 : CGGTTGCGTAGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAG : 266962 128 : LeuIleMetLeuAsnCysAlaLysIleGlyArgTyrPheThrMetValTyrLeuAlaL : 147 ! !:!:||||||!!. !|||!:!||||||||||||.!!.!!!!: !!! ! !|||! GlnValMetLeuLysAsnAlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaP 266963 : CAGGTGATGTTGAAGAACGCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGT : 267022 148 : euGlyTyrSerGlyAlaLeuProTyrHisIleIleLeuProLeuIleSerGluArgIl : 166 !! ! ! !!!|||!.!||| !||| !:!:||| ! !!!!!! !! !:!!! !:! heMetGlnCysGlyValLeuGlyTyrCysValIleThrAlaPheThrMetGlnThrVa 267023 : TCATGCAATGCGGTGTTCTCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGT : 267079 167 : eValLysAlaAspAsnThrThrGlnIleProLeuProTyrLeuSerAspTyr<->Val : 184 :! ! !.!:!!.!.|||! ! :!!! !||| ! !! !:!!! !||| ! lGluValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaValTyrLysLys 267080 : GGAAGTCGGTAACGAGACTAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAG : 267136 185 : PhePheValIleGluAspSerProIleTyrGluIleThrPheValValGlnMetCysI : 204 .!..!!!.!:!!!!: !||||||! !!||||||..!.!!||| !|||.!. MetIleAlaValAspThrSerProThrAsnGluIleValLeuValSerGlnPheValS 267137 : ATGATCGCAGTTGATACCAGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTAT : 267196 205 : leSerCysIleIleMetThrThrAsnTyrGlyIleTyrSerLeuIleAlaSerIleTh : 223 !.!!! !|||:!:! :!!!:! ! !||| !!:!|||||| !||| !.!!.! erGlyPheIleValAsnSerSerValValGlyAlaPheSerLeuAlaAlaValPheAl 267197 : CAGGATTCATCGTGAATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGC : 267253 224 : rMetHisSerCysCysLeuPheGluValThrSerArgArgIleGluGlu : 239 ! |||:!!||| ! ! !.!....||| !! !! ! !!|||:!!||| aAlaHisAlaCysGlyGlnLeuSerValLeuMetMetTrpIleLysGlu 267254 : GGCTCACGCGTGCGGACAGCTGAGCGTGCTGATGATGTGGATCAAGGAG : 267303 vulgar: gi|815893753|ref|XP_003484570.2| 13 239 . KQ414889.1 266616 267303 + 184 M 24 72 G 0 6 M 146 438 G 0 3 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266617 267303 184 + . gene_id 3 ; sequence gi|815893753|ref|XP_003484570.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266617 267303 . + . KQ414889.1 exonerate:protein2genome:local exon 266617 267303 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266617 267303 184 + . alignment_id 3 ; Query gi|815893753|ref|XP_003484570.2| ; Align 266617 14 72 ; Align 266695 38 438 ; Align 267136 184 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893753|ref|XP_003484570.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 104 -> 263 Target range: 304386 -> 304866 105 : LysGluIleArgPheCysLeuAsnGluIleGluIleGlnTyrLysAspValLysCysG : 124 |||...::: !||| ! ! !...!!::!!...! ! !|||:!!.!.|||:!!! ! LysArgLeuValPheArg***GlyAspLeuSerThrGlyTyrGluGlnValGluSerL 304387 : aaacgtttaGTGTTTCGATAAGGGGATCTCTCTACTGGATATGAACAGGTGGAATCTC : 304444 125 : luGluAspArgLeuIleMetLeuAsnCysAlaLysIleGlyArgTyrPheThrMetVa : 143 ..!|||||| !!!:||||||!!.! !!.!:!!!!:|||||| !!.!.|||!!::! euArgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIl 304445 : TCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAAT : 304501 144 : lTyrLeuAlaLeuGlyTyrSerGlyAlaLeuProTyrHisIleIleLeuProLeuIle : 162 !! ! ! !!!! !|||!!!|||!.! ! !||||||! :!!:!!! !!!! eCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheAla 304502 : CTGCGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCG : 304558 163 : SerGluArgIleValLysAlaAspAsnThrThrGlnIleProLeuProTyrLeuSerA : 182 !!!! !! ! !||| ! ! ! !!||| !||| ! !|||||| !|||! !!!! ThrGlyThrTyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProThrT 304559 : ACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACCT : 304618 183 : spTyrValPhePheValIleGluAspSerProIleTyrGluIleThrPheValValGl : 201 !! !!.!!!.|||! !:!!:!! |||||||||||||||:!:..!!:! !!|||!! yrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheValHi 304619 : ACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCA : 304675 202 : nMetCysIleSerCysIleIleMetThrThrAsnTyrGlyIleTyrSerLeuIleAla : 220 . !.!!! !:!!||| :!!! !!.! !||| !! !.!!||| !||| sCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAla 304676 : TTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCT : 304732 221 : SerIleThrMetHisSerCysCysLeuPheGluValThrSerArgArgIleGluGluL : 240 !.!!.!!! |||:!!||| ! ! !.!!!!::!!..!! ! !|||:!:! !!:| LeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAspL 304733 : CTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGATC : 304792 241 : eu<->ArgLysTrpAspLysArgAspLeuHisAspArgIleAlaAspIleValGlnCy : 258 || !.!!.. !!:..! !|||||| !! ! |||:!! !!!:||||||:!! euValAsnSerLysGluSerSerAspLeuAspLysArgLeuIleGluIleValGluHi 304793 : TTGTCAACAGCAAAGAATCATCTGATTTAGATAAACGATTAATAGAAATTGTTGAGCA : 304849 259 : sHisLeuLysAlaIle : 263 !||||||::! !:!! sHisLeuArgIleLeu 304850 : TCATTTGCGAATTTTA : 304866 vulgar: gi|815893753|ref|XP_003484570.2| 104 263 . KQ414889.1 304386 304866 + 171 M 136 408 G 0 3 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304387 304866 171 + . gene_id 4 ; sequence gi|815893753|ref|XP_003484570.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304387 304866 . + . KQ414889.1 exonerate:protein2genome:local exon 304387 304866 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304387 304866 171 + . alignment_id 4 ; Query gi|815893753|ref|XP_003484570.2| ; Align 304387 105 408 ; Align 304798 241 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893753|ref|XP_003484570.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 13 -> 226 Target range: 274362 -> 275010 14 : HisTyrLysSerAspSerGluTyrValMetHisIleAlaLysThrLeuLeuThrLeuI : 33 :!!!:! ! ||| !|||!!:||| !:!!!!.:!: !::! !!!!|||! !! !| AsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 274363 : AATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTA : 274420 34 : leGlyIleTrpPro<-><->ArgLysAspThrPheLeuAspAsnValLysMetTyrIl : 50 ||||| |||||| ! !||| !!!!!:...:!! :!!:: leGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLeuSerHisLe 274421 : TAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCt : 274477 51 : eGlnThrValThrIlePheIleLeuMetCysPheLeuLeuIleProHisValIleTyr : 69 : ::! !!!!!!: !! ! !:!!|||||| !:!!.!!:!! uLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIlePheHis 274478 : tttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCAC : 274534 70 : ThrTyrPheAspCysGluAspLeuThrLysTyrMetLysValIleAlaAlaGlnValP : 89 ! ! .!.! !|||..!||| ! ! ! :!!|||:!!:!!!.! !!! ! ! IleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyH 274535 : ATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTC : 274594 90 : heSerLeuLeuAlaIleIleLysPheTrpThrLeuIlePheAsnArgLysGluIleAr : 108 !!!!!!!:!!!.! !|||!!.!:! ||||||:!:.!...!!!!||||||||||| isTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleAr 274595 : ACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACG : 274651 109 : gPheCysLeuAsnGluIleGluIleGlnTyrLysAspValLysCysGluGluAspArg : 127 | !|||:!!.!..!.!!::!!! !.!.!::!:! !|||! ! !||||||!:! gGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAspGln 274652 : CGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAA : 274708 128 : LeuIleMetLeuAsnCysAlaLysIleGlyArgTyrPheThrMetValTyrLeuAlaL : 147 ! !:!:||||||!!. !|||||||||||||||||| !!.!!!!: !!! ! !|||! GlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaP 274709 : CAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGT : 274768 148 : euGlyTyrSerGlyAlaLeuProTyrHisIleIleLeuProLeuIleSerGluArgIl : 166 !! ! ! !!!|||!.!||| !||| !:!:||| ! !!!!!! !! !:!!! !:! heMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGlnThrVa 274769 : TCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGT : 274825 167 : eValLysAlaAspAsnThrThrGlnIle<->ProLeuProTyrLeuSerAspTyrVal : 184 ! ! !!.!:!!.!.|||! ! :!: !||||||! ! !:!! !! ! ! lGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLysLys 274826 : TCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAG : 274882 185 : PhePheValIleGluAspSerProIleTyrGluIleThrPheValValGlnMetCysI : 204 .!! !!!.!:!:!!: ||||||! !!||||||..!.!!!.! !|||.!. IleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnPheValS 274883 : ATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGT : 274942 205 : leSerCysIleIleMetThrThrAsnTyrGlyIleTyrSerLeuIleAlaSerIleTh : 223 .!!! !|||:!:! :!!!:! !||| !!:!|||||| !||| !.!!.! erGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAl 274943 : CGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGC : 274999 224 : rMetHisSer : 226 ! |||:!! aAlaHisAla 275000 : GGCACACGCT : 275010 vulgar: gi|815893753|ref|XP_003484570.2| 13 226 . KQ414889.1 274362 275010 + 161 M 24 72 G 0 6 M 138 414 G 0 3 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274363 275010 161 + . gene_id 5 ; sequence gi|815893753|ref|XP_003484570.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274363 275010 . + . KQ414889.1 exonerate:protein2genome:local exon 274363 275010 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274363 275010 161 + . alignment_id 5 ; Query gi|815893753|ref|XP_003484570.2| ; Align 274363 14 72 ; Align 274441 38 414 ; Align 274858 176 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893753|ref|XP_003484570.2| PREDICTED: odorant receptor 13a-like [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 303 -> 401 Target range: 301784 -> 302160 304 : ThrPheSerThrIleThrTyrPheValLeuMetThrSerMetPheValAsnValPheI : 323 :!!||| !!||| !||||||!!. !! !! ...... ||||||||| SerPheArgThrGlyThrTyrLeuGln***LysPheProPheLeuPheAsnValPheP 301785 : TCTTTCCGAACAGGTACTTACTTACAGTAGAagtttccatttcttttcaatGTATTTC : 301842 324 : leIleSerPheIleGlyAspArgLeuLysGlnGluSerGluArgIleGlyGluThrSe : 342 ! ! !!!.! !.!! !! ! !:::.!. !!!!!...!:!||||||..!.!!|| roArgTyrLeuSerSerPheIleGlyArgAsp***CysSerGlnIleGlySerAlaSe 301843 : CACGGTATTTAAGCAGCTTTATTGGTCGTGATTAGTGTAGCCAAATTGGTTCAGCATC : 301899 343 : rTyrSerLeuProTrpTyrAspPheProLeuAsnGluAlaLysAsnValArgThrIle : 361 ||||..!:!! !||||||:!!!!.||| !!!...!||| ! :!!:!!! ! !:!! rTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeu 301900 : GTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTT : 301956 362 : IleLeuArgThrArgLeuProSerSerLeuSerGlyAlaLysIleLeuAspLeuSerL : 381 ! !:!!! !:!!!:!! !||| !!!.!|||!!!!.!!.!||||||:!!|||||||||| SerValIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerL 301957 : AGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCT : 302016 382 : euGlnAlaPheCysAsp >>>> Target Intron 1 >>>> ValValLysThr : 390 ||.!..!!||| !!..! 82 bp |||||||||||| euAsnThrPheSerSer++ ++ValValLysThr 302017 : TGAATACATTCAGCTCTgt.........................agGTGGTGAAAACA : 302125 391 : SerAlaAlaTyrPheAsnValLeuArgAlaMet : 401 |||!.!!.!|||!!.|||:!!||||||.!!:!: SerValValTyrLeuAsnLeuLeuArgThrVal 302126 : TCGGTGGTGTACTTGAATTTACTGCGAACAGTT : 302160 vulgar: gi|815893753|ref|XP_003484570.2| 303 401 . KQ414889.1 301784 302160 + 113 M 83 249 5 0 2 I 0 78 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301785 302160 113 + . gene_id 6 ; sequence gi|815893753|ref|XP_003484570.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301785 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301785 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302160 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302160 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301785 302160 113 + . alignment_id 6 ; Query gi|815893753|ref|XP_003484570.2| ; Align 301785 304 249 ; Align 302116 387 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893599|ref|XP_012249301.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 11 -> 58 Target range: 2970 -> 3111 12 : LysValAlaSerGlnSerGluIleSerGlyValLeuIleLysAspSerValPheLeuLeuSe : 32 ||| !!.!|||.!.|||||||||!:!!.!! !!!! !||||||!!!..!|||:!!:!!! LysGlnValSerAsnSerGluIleAsnAlaGluPheAlaLysAspCysThrPheIleValIl 2971 : AAACAGGTGTCGAACTCGGAGATTAACGCGGAGTTTGCCAAGGATTGCACATTTATCGTGAT : 3031 33 : rGlnLeuIleHisIleLeuLeuLeuThrValGlnGlyGlnPheValLeuAsnSerAsnAspG : 53 !||||||:!!|||||||||! !||||||:!!|||||||||||||||:!!:!!:!!|||!!:| eGlnLeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAspAlaAsnGluG 3032 : TCAATTGGTACACATACTTTACCTAACTCTTCAAGGACAATTCGTGATCGACGCGAACGAGG : 3094 54 : luIleIleGluSerIle : 58 |||||.!!||||||!!: luIlePheGluSerMet 3095 : AAATCTTCGAATCGATG : 3111 vulgar: gi|815893599|ref|XP_012249301.1| 11 58 . KQ414921.1 2970 3111 + 129 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 2971 3111 129 + . gene_id 1 ; sequence gi|815893599|ref|XP_012249301.1| ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 2971 3111 . + . KQ414921.1 exonerate:protein2genome:local exon 2971 3111 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 2971 3111 129 + . alignment_id 1 ; Query gi|815893599|ref|XP_012249301.1| ; Align 2971 12 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893711|ref|XP_012249779.1| PREDICTED: odorant receptor 43a [Bombus impatiens] Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 9 -> 56 Target range: 2970 -> 3111 10 : LysValAlaSerGlnAlaAsnIleSerGlyGlnLeuIleLysAspIleValPheLeuLeuAl : 30 ||| !!.!|||.!.:!!.!.|||!:!!.!:!!!!! !|||||| !..!|||:!!:!! LysGlnValSerAsnSerGluIleAsnAlaGluPheAlaLysAspCysThrPheIleValIl 2971 : AAACAGGTGTCGAACTCGGAGATTAACGCGGAGTTTGCCAAGGATTGCACATTTATCGTGAT : 3031 31 : aGlnLeuValHisIlePhePhePheLeuLeuGlnGlyGlnPheValLeuAsnAlaAsnAspG : 51 !|||||||||||||||.!!!:!.!. !||||||||||||||||||:!!:!!||||||!!:| eGlnLeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAspAlaAsnGluG 3032 : TCAATTGGTACACATACTTTACCTAACTCTTCAAGGACAATTCGTGATCGACGCGAACGAGG : 3094 52 : luPheAlaGluSerIle : 56 ||.!! !||||||!!: luIlePheGluSerMet 3095 : AAATCTTCGAATCGATG : 3111 vulgar: gi|815893711|ref|XP_012249779.1| 9 56 . KQ414921.1 2970 3111 + 117 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 2971 3111 117 + . gene_id 1 ; sequence gi|815893711|ref|XP_012249779.1| ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 2971 3111 . + . KQ414921.1 exonerate:protein2genome:local exon 2971 3111 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 2971 3111 117 + . alignment_id 1 ; Query gi|815893711|ref|XP_012249779.1| ; Align 2971 10 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893327|ref|XP_012238845.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 271 -> 349 Target range: 807314 -> 807545 272 : LeuIleTyrValValTyrValMetLeuHisLeuPheLeuTyrCysTyrMetGlyGluL : 291 !!!:!! :!!||| !:!!:!!:!!!!.|||!:!||||||..!||| !|||.!.! PheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnT 807315 : TTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACA : 807372 292 : ysLeuThrSerGluSerThrGluIleAlaAspThrValTyrAsnAlaGluTrpTyrAs : 310 !||| !|||..!!!! !|||||||||.!..!!!.!|||:!!:!! ||||||.. hrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrAr 807373 : CACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCG : 807429 311 : nLeuProProLysAsnAlaArgTrpLeuIleIleIleMetCysArgAlaArgAlaSer : 329 !! !! ! ! ! |||||| |||:!!:!:|||!!: !|||!.!!.! ||| gCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsn---Ser 807430 : TTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAAT---TCG : 807483 330 : ProLeuLysIleThrAlaGlyLysPheCysSerPheThrLeuValLeuPheSerGlnV : 349 |||! !:::|||||||||||||||||| ! !!.!.!.!||| !! !|||!.!:!!: ProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluI 807484 : CCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGA : 807543 350 : al : 349 !! le 807544 : TA : 807545 vulgar: gi|815893327|ref|XP_012238845.1| 271 349 . KQ414940.1 807314 807545 + 130 M 56 168 G 1 0 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807315 807545 130 + . gene_id 1 ; sequence gi|815893327|ref|XP_012238845.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807315 807545 . + . KQ414940.1 exonerate:protein2genome:local exon 807315 807545 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807315 807545 130 + . alignment_id 1 ; Query gi|815893327|ref|XP_012238845.1| ; Align 807315 272 168 ; Align 807483 329 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893599|ref|XP_012249301.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 12 -> 115 Target range: 807272 -> 807581 13 : ValAlaSerGlnSerGluIleSerGlyValLeuIleLysAspSerValPheLeuLeuS : 32 |||||| !...!!!:!! !!:!! !!.! !:!:!:!..!! !|||.!.:!!:!!! ValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuMetValT 807273 : GTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGATGGTGA : 807330 33 : erGlnLeuIleHisIleLeuLeuLeuThrValGlnGlyGlnPheValLeuAsnSerAs : 51 !! !||||||!!.:!:! !|||! !.!! ! !|||.!. :!! !::: !!!. hrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgTh 807331 : CTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAAC : 807387 52 : nAspGluIleIleGluSerIleTyrAspAlaSerTrpTyrAsnAlaAsnArgLysThr : 70 !!!:|||||| !:!!:!! !||||||:!! !||||||..!..!:!! !! ! .!! rGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAla 807388 : CGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCA : 807444 71 : GlnLeuLeuPheValLeuSerIleArgSerCysLeuSerProProIleLeuSerAlaG : 90 ! !.!!:!!|||! !|||!.! !! ! !|||||| ! !:!!!!!|||| AlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaG 807445 : GCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCG : 807504 91 : lyGlyLeuLeuAspLeuAsnLeuLysAsnPheAlaGluIleIleLysAlaSerValSe : 109 || !!!!:!! :!!|||||| !.!||| !||||||:!:|||||||||! !|| lyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySe 807505 : GAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTC : 807561 110 : rTyrPheThrValLeuLys : 115 ||||.!.:!!|||:!!||| rTyrLeuSerValMetLys 807562 : GTATCTGTCTGTAATGAAG : 807581 vulgar: gi|815893599|ref|XP_012249301.1| 12 115 . KQ414940.1 807272 807581 + 129 M 103 309 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807273 807581 129 + . gene_id 1 ; sequence gi|815893599|ref|XP_012249301.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807273 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807273 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807273 807581 129 + . alignment_id 1 ; Query gi|815893599|ref|XP_012249301.1| ; Align 807273 13 309 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893711|ref|XP_012249779.1| PREDICTED: odorant receptor 43a [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 21 -> 113 Target range: 807305 -> 807581 22 : IleLysAspIleValPheLeuLeuAlaGlnLeuValHisIlePhePhePheLeuLeuG : 41 :!:!:!..!.!!|||.!.:!!:!!.!! !|||:!!!!.:!:!:!.!!!:! !! ! LeuArgSerPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrA 807306 : TTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACG : 807363 42 : lnGlyGlnPheValLeuAsnAlaAsnAspGluPheAlaGluSerIleTyrAsnThrPh : 60 !|||.!. :!! !::: !!.!!!:|||.!!|||:!!:!! !|||:!!:!!.! laGlyAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLe 807364 : CGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCT : 807420 61 : eTrpTyrAsnThrAsnThrArgThrLysLeuLeuLeuValLeuValLeuArgSerCys : 79 !||||||..! !:!! !!.!.!! ! !|||:!!|||:!!:!!!.! !! ! uTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGly 807421 : TTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGA : 807477 80 : SerSerAlaProAsnLeuSerAlaGlyGlyLeuLeuValPheAsnLeuLysAsnPheS : 99 !:!||| !! !..!:!!!!!|||||| !!!!:!! !.!.|||||| !.!|||! AsnSerProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheL 807478 : AATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCA : 807537 100 : erGluIleLeuLysThrSerPheSerTyrPheThrValLeuLys : 113 .!||||||||||||.!!||| !||||||.!.:!!|||:!!||| ysGluIleLeuLysAlaSerGlySerTyrLeuSerValMetLys 807538 : AGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: gi|815893711|ref|XP_012249779.1| 21 113 . KQ414940.1 807305 807581 + 130 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807306 807581 130 + . gene_id 1 ; sequence gi|815893711|ref|XP_012249779.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807306 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807306 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807306 807581 130 + . alignment_id 1 ; Query gi|815893711|ref|XP_012249779.1| ; Align 807306 22 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893599|ref|XP_012249301.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 11 -> 58 Target range: 1546 -> 1687 12 : LysValAlaSerGlnSerGluIleSerGlyValLeuIleLysAspSerValPheLeuLeuSe : 32 ||| !!.!|||.!.|||||||||!:!!.!! !!!!! !||||||!!!..!|||:!!:!!! LysGlnValSerAsnSerGluIleAsnAlaGluPheThrLysAspCysThrPheIleMetIl 1547 : AAACAGGTGTCGAACTCGGAGATTAACGCGGAGTTTACCAAGGATTGCACATTTATCATGAT : 1607 33 : rGlnLeuIleHisIleLeuLeuLeuThrValGlnGlyGlnPheValLeuAsnSerAsnAspG : 53 !||||||:!!|||||||||! !||||||:!!|||||||||||||||:!!:!!:!!|||!!:| eGlnLeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAspAlaAsnGluG 1608 : TCAATTGGTACACATACTTTATCTAACTCTTCAAGGACAATTCGTGATCGACGCGAACGAGG : 1670 54 : luIleIleGluSerIle : 58 |||||.!!||||||!!: luIlePheGluSerMet 1671 : AAATCTTCGAATCGATG : 1687 vulgar: gi|815893599|ref|XP_012249301.1| 11 58 . LHQN01023902.1 1546 1687 + 130 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 1547 1687 130 + . gene_id 1 ; sequence gi|815893599|ref|XP_012249301.1| ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 1547 1687 . + . LHQN01023902.1 exonerate:protein2genome:local exon 1547 1687 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 1547 1687 130 + . alignment_id 1 ; Query gi|815893599|ref|XP_012249301.1| ; Align 1547 12 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893711|ref|XP_012249779.1| PREDICTED: odorant receptor 43a [Bombus impatiens] Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 9 -> 56 Target range: 1546 -> 1687 10 : LysValAlaSerGlnAlaAsnIleSerGlyGlnLeuIleLysAspIleValPheLeuLeuAl : 30 ||| !!.!|||.!.:!!.!.|||!:!!.!:!!!!!! !|||||| !..!|||:!!:!! LysGlnValSerAsnSerGluIleAsnAlaGluPheThrLysAspCysThrPheIleMetIl 1547 : AAACAGGTGTCGAACTCGGAGATTAACGCGGAGTTTACCAAGGATTGCACATTTATCATGAT : 1607 31 : aGlnLeuValHisIlePhePhePheLeuLeuGlnGlyGlnPheValLeuAsnAlaAsnAspG : 51 !|||||||||||||||.!!!:!.!. !||||||||||||||||||:!!:!!||||||!!:| eGlnLeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAspAlaAsnGluG 1608 : TCAATTGGTACACATACTTTATCTAACTCTTCAAGGACAATTCGTGATCGACGCGAACGAGG : 1670 52 : luPheAlaGluSerIle : 56 ||.!! !||||||!!: luIlePheGluSerMet 1671 : AAATCTTCGAATCGATG : 1687 vulgar: gi|815893711|ref|XP_012249779.1| 9 56 . LHQN01023902.1 1546 1687 + 118 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 1547 1687 118 + . gene_id 1 ; sequence gi|815893711|ref|XP_012249779.1| ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 1547 1687 . + . LHQN01023902.1 exonerate:protein2genome:local exon 1547 1687 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 1547 1687 118 + . alignment_id 1 ; Query gi|815893711|ref|XP_012249779.1| ; Align 1547 10 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893599|ref|XP_012249301.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 255 Query range: 28 -> 117 Target range: 2334 -> 2973 29 : PheLeuLeuSerGlnLeuIleHisIleLeuLeuLeuThrValGlnGlyGlnPheValLeuAs : 49 ||||||:!! !||||||:!!|||:!:|||!!!|||:!!:!!||||||!!.|||:!!:!! PheLeuValValGlnLeuValHisLeuLeuPheLeuSerIleGlnGlyHisPheIleIleLe 2335 : TTCTTGGTGGTGCAACTGGTTCATTTGCTTTTCCTTTCTATCCAGGGACACTTTATTATACT : 2395 50 : nSerAsnAspGluIleIleGluSer{Il} >>>> Target Intron 1 >>>> {e}T : 59 !|||:!!||| !! ! !!!:!:!{||} 133 bp {|}| uSerHisAspMetThrTyrAspAsn{Il}++ ++{e}T 2396 : CTCGCATGACATGACTTACGACAAC{AT}gt.........................ag{A}T : 2558 60 : yrAspAlaSerTrpTyrAsnAlaAsnArgLysThrGlnLeuLeuPheValLeuSerIleArg : 79 ||..!|||!.!|||||||||::!:::! !!:!|||||| !|||!:!||||||:!!:!:||| yrSerAlaLysTrpTyrAsnSerSerProArgThrGlnThrLeuTyrValLeuAlaLeuArg 2559 : ATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAAACTCTGTACGTGCTAGCTTTGAGG : 2618 80 : SerCysLeuSerProProIleLeuSerAlaGlyGlyLeuLeuAspLeuAsnLeuLysAsnPh : 100 !!! !!|||!!!||||||:!:|||!!!||||||||||||:!!..!|||||||||:!!!.!|| ArgSerLeuThrProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPh 2619 : AGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGATTTCCTTGAATTTGGAGACTTT : 2681 101 : eAlaGlu >>>> Target Intron 2 >>>> IleIleLysAlaSerValSerTyrPh : 111 ||||||| 239 bp |||:!!|||||||||||||||:::|| eAlaGlu++ ++IleLeuLysAlaSerValSerPhePh 2682 : TGCCGAGgt.........................agaTCTTAAAAGCAtccgtttccttttt : 2953 112 : eThrValLeuLysSerThr : 117 |||||||:!!||||||||| eThrValMetLysSerThr 2954 : cacgGTAATGAAATCGACA : 2973 vulgar: gi|815893599|ref|XP_012249301.1| 28 117 . LHQN01025741.1 2334 2973 + 255 M 29 87 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 44 132 5 0 2 I 0 235 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 2335 2973 255 + . gene_id 1 ; sequence gi|815893599|ref|XP_012249301.1| ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 2335 2423 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2335 2423 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 2424 2425 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 2424 2556 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 2555 2556 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 2557 2689 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2557 2689 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 2690 2691 . + . intron_id 2 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 2690 2928 . + . intron_id 2 LHQN01025741.1 exonerate:protein2genome:local splice3 2927 2928 . + . intron_id 1 ; splice_site "ag" LHQN01025741.1 exonerate:protein2genome:local cds 2929 2973 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2929 2973 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 2335 2973 255 + . alignment_id 1 ; Query gi|815893599|ref|XP_012249301.1| ; Align 2335 29 87 ; Align 2558 59 132 ; Align 2929 103 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893599|ref|XP_012249301.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 232 Query range: 23 -> 116 Target range: 9063 -> 9540 24 : IleLysAspSerValPheLeuLeuSerGlnLeuIleHisIleLeuLeuLeuThrValGlnGl : 44 :!! ! !!.!!..!|||!!!:!!.!!||| !.!!|||:!!!!!!!!|||!.!|||||||| ValValHisGlyThrPhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGlnGl 9064 : GTTGTGCACGGAACGTTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGG : 9124 45 : yGlnPheValLeuAsnSerAsnAspGlu{Il} >>>> Target Intron 1 >>>> { : 54 ||||||||||:!!|||:!! !||||||{:!} 113 bp { yGlnPheValIleAsnAlaPheAspGlu{Le}++ --{ 9125 : ACAATTTGTGATAAACGCGTTCGACGAA{CT}gt.........................ct{ : 9269 55 : e}IleGluSerIleTyrAspAlaSerTrpTyrAsnAlaAsnArgLysThrGlnLeuLeuPhe : 74 !}:!! !!!! !|||!!::!!..!||||||||| !!.!! !!:!|||||| !|||!:! u}ValLeuCysArgTyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyr 9270 : T}GTCCTTTGCAGATACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTAT : 9327 75 : ValLeuSerIleArgSerCysLeuSerProProIleLeuSerAlaGlyGlyLeuLeuAspLe : 95 ||||||:!!:!:||||||||||||!:!||||||:!:|||!!!|||||||||:!! ! || ValLeuAlaLeuArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLe 9328 : GTATTGGCATTGAGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTT : 9390 96 : uAsnLeuLysAsnPheAlaGlu >>>> Target Intron 2 >>>> IleIleLysAl : 106 |||||||::!:::||||||||| 85 bp ||||||||||| uAsnLeuArgSerPheAlaGlu++ ++IleIleLysAl 9391 : GAATCTACGATCGTTCGCAGAGgt.........................agATCATCAAAGC : 9508 107 : aSerValSerTyrPheThrValLeuLysSer : 116 |||||||||||||!:!||||||:!!:!!!!! aSerValSerTyrTyrThrValMetGlnThr 9509 : ATCTGTTTCCTACTACACGGTGATGCAGACC : 9540 vulgar: gi|815893599|ref|XP_012249301.1| 23 116 . LHQN01025741.1 9063 9540 + 232 M 30 90 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 48 144 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 9064 9540 232 + . gene_id 2 ; sequence gi|815893599|ref|XP_012249301.1| ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 9064 9155 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9064 9155 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 9156 9157 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 9156 9268 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 9267 9268 . + . intron_id 0 ; splice_site "CT" LHQN01025741.1 exonerate:protein2genome:local cds 9269 9413 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9269 9413 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 9414 9415 . + . intron_id 2 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 9414 9498 . + . intron_id 2 LHQN01025741.1 exonerate:protein2genome:local splice3 9497 9498 . + . intron_id 1 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 9499 9540 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9499 9540 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 9064 9540 232 + . alignment_id 2 ; Query gi|815893599|ref|XP_012249301.1| ; Align 9064 24 90 ; Align 9270 55 144 ; Align 9499 103 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893599|ref|XP_012249301.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 191 Query range: 14 -> 117 Target range: 12200 -> 13062 15 : SerGlnSerGluIleSerGlyValLeuIleLysAspSerValPheLeuLeuSerGlnLeu : 34 ||| !:!!!!::!!..! ! !!!! !!:!:!!!!! !|||:!!|||!!!|||||| SerThrAlaAspLeuAspIleAsnPheTyrArgAsnCysSerPheMetLeuCysGlnLeu 12201 : AGTACGGCGGATTTAGATATAAACTTCTACAGAAACTGCAGTTTCATGTTGTGTCAACTG : 12258 35 : IleHisIleLeuLeuLeuThrValGlnGlyGlnPheValLeuAsnSerAsnAspGluIle : 54 !!:|||:!!!!!:!!:!!! !:!!||||||||||||||||||:!!||| !|||..!||| MetHisLeuPheValIleMetLeuGlnGlyGlnPheValLeuAspSerCysAspArgIle 12259 : ATGCATCTATTTGTCATCATGCTTCAGGGACAGTTCGTGCTGGATTCGTGCGACAGAATT : 12318 55 : IleGluSer{Il} >>>> Target Intron 1 >>>> {e}TyrAspAlaSerTrp : 63 !! !:!!{||} 470 bp {|}|||!!::!!! !||| HisAlaAla{Il}++ ++{e}TyrGluSerLeuTrp 12319 : CACGCGGCG{AT}gt.........................ag{A}TACGAATCATTATGG : 12815 64 : TyrAsnAlaAsnArgLysThrGlnLeuLeuPheValLeuSerIleArgSerCysLeuSer : 83 |||!..::!::! !||||||||| !|||!:!|||:!!:!!:!!|||!!! !|||!!! TyrThrSerSerSerLysThrGlnAlaLeuTyrValValAlaLeuArgArgAsnLeuThr 12816 : TACACAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCGTTACGAAGAAACCTAACA : 12875 84 : ProProIleLeuSerAlaGlyGlyLeuLeuAspLeuAsnLeu >>>> Target Intr : 98 ||| !! !|||!!!||||||||||||:!!.!.||||||:!! 83 bp ProThrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMet+- 12876 : CCTACCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATGgc................ : 12922 99 : on 2 >>>> LysAsnPheAlaGluIleIleLysAlaSerValSerTyrPheThrValL : 114 :!!...! ! !:!!:!::!!||| !||||||||||||!:!||||||| +-GlnArgCysLeuGlnValValLysMetSerValSerTyrTyrThrValL 12923 : .........aaCAACGATGTTTGCAGGTGGTAAAAATGTCCGTATCCTATTATACGGTGT : 13051 115 : euLysSerThr : 117 |||||!!!||| euLysThrThr 13052 : TGAAGACAACG : 13062 vulgar: gi|815893599|ref|XP_012249301.1| 14 117 . LHQN01025741.1 12200 13062 + 191 M 43 129 S 0 2 5 0 2 I 0 466 3 0 2 S 1 1 M 39 117 5 0 2 I 0 79 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 12201 13062 191 + . gene_id 3 ; sequence gi|815893599|ref|XP_012249301.1| ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 12201 12331 . + . LHQN01025741.1 exonerate:protein2genome:local exon 12201 12331 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 12332 12333 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 12332 12801 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 12800 12801 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 12802 12919 . + . LHQN01025741.1 exonerate:protein2genome:local exon 12802 12919 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 12920 12921 . + . intron_id 2 ; splice_site "GC" LHQN01025741.1 exonerate:protein2genome:local intron 12920 13002 . + . intron_id 2 LHQN01025741.1 exonerate:protein2genome:local splice3 13001 13002 . + . intron_id 1 ; splice_site "AA" LHQN01025741.1 exonerate:protein2genome:local cds 13003 13062 . + . LHQN01025741.1 exonerate:protein2genome:local exon 13003 13062 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 12201 13062 191 + . alignment_id 3 ; Query gi|815893599|ref|XP_012249301.1| ; Align 12201 15 129 ; Align 12803 59 117 ; Align 13003 98 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893711|ref|XP_012249779.1| PREDICTED: odorant receptor 43a [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 200 Query range: 25 -> 102 Target range: 9075 -> 9419 26 : ValPheLeuLeuAlaGlnLeuValHisIlePhePhePheLeuLeuGlnGlyGlnPheValLe : 46 ..!|||!!!:!!!.!||| ! !!|||:!!||||||!!. !:!!|||||||||||||||:! ThrPhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGlnGlyGlnPheValIl 9076 : ACGTTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGGACAATTTGTGAT : 9136 47 : uAsnAlaAsnAspGluPheAlaGluSer{Il} >>>> Target Intron 1 >>>> { : 56 !|||||| !||||||.!. !!!:!.!{||} 113 bp { eAsnAlaPheAspGluLeuTyrAspLys{Il}++ ++{ 9137 : AAACGCGTTCGACGAACTGTACGACAAG{AT}gt.........................ag{ : 9281 57 : e}TyrAsnThrPheTrpTyrAsnThrAsnThrArgThrLysLeuLeuLeuValLeuValLeu : 76 |}|||.!.:!! ||||||||| !!.! !!||||||:!! !|||! !||||||!.!||| e}TyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeu 9282 : A}TACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTG : 9339 77 : ArgSerCysSerSerAlaProAsnLeuSerAlaGlyGlyLeuLeuValPheAsnLeuLysAs : 97 ||||||||| !!:! !!||| |||!!!|||||||||:!! !..!!!.||||||::!:: ArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSe 9340 : AGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATC : 9402 98 : nPheSerGluIleLeu : 102 :|||:!!|||:!::!! rPheAlaGluValIle 9403 : GTTCGCAGAGGTGATT : 9419 vulgar: gi|815893711|ref|XP_012249779.1| 25 102 . LHQN01025741.1 9075 9419 + 200 M 30 90 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 9076 9419 200 + . gene_id 1 ; sequence gi|815893711|ref|XP_012249779.1| ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 9076 9167 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9076 9167 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 9168 9169 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 9168 9280 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 9279 9280 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 9281 9419 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9281 9419 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 9076 9419 200 + . alignment_id 1 ; Query gi|815893711|ref|XP_012249779.1| ; Align 9076 26 90 ; Align 9282 57 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893711|ref|XP_012249779.1| PREDICTED: odorant receptor 43a [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 12 -> 105 Target range: 12200 -> 12949 13 : SerGlnAlaAsnIleSerGlyGlnLeuIleLysAspIleValPheLeuLeuAlaGlnLeu : 32 ||| !|||:!!:!!..! !.!.!!! !!:!:!! ! !|||:!!|||..!|||||| SerThrAlaAspLeuAspIleAsnPheTyrArgAsnCysSerPheMetLeuCysGlnLeu 12201 : AGTACGGCGGATTTAGATATAAACTTCTACAGAAACTGCAGTTTCATGTTGTGTCAACTG : 12258 33 : ValHisIlePhePhePheLeuLeuGlnGlyGlnPheValLeuAsnAlaAsnAspGluPhe : 52 :!!|||:!!||| !!.!!:!!|||||||||||||||||||||:!!:!! !|||..!.!! MetHisLeuPheValIleMetLeuGlnGlyGlnPheValLeuAspSerCysAspArgIle 12259 : ATGCATCTATTTGTCATCATGCTTCAGGGACAGTTCGTGCTGGATTCGTGCGACAGAATT : 12318 53 : AlaGluSer{Il} >>>> Target Intron 1 >>>> {e}TyrAsnThrPheTrp : 61 !! !:!!{||} 470 bp {|}|||.!.:!!!!.||| HisAlaAla{Il}++ ++{e}TyrGluSerLeuTrp 12319 : CACGCGGCG{AT}gt.........................ag{A}TACGAATCATTATGG : 12815 62 : TyrAsnThrAsnThrArgThrLysLeuLeuLeuValLeuValLeuArgSerCysSerSer : 81 |||!..!:!::!:!!!:!|||:!! !|||! !|||:!!!.!||||||!!! ! !!!! TyrThrSerSerSerLysThrGlnAlaLeuTyrValValAlaLeuArgArgAsnLeuThr 12816 : TACACAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCGTTACGAAGAAACCTAACA : 12875 82 : AlaProAsnLeuSerAlaGlyGlyLeuLeuValPheAsnLeuLysAsnPheSerGluIle : 101 !! !! !|||!!!||||||||||||:!! !.!.|||:!! !!:!|||! !|||:!! ProThrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMetAlaSerPheLeuGluVal 12876 : CCTACCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATGGCAAGTTTCTTGGAGGTA : 12935 102 : LeuLysThrSer : 105 !! |||!:! AsnThrThrAsn 12936 : AACACCACCAAC : 12949 vulgar: gi|815893711|ref|XP_012249779.1| 12 105 . LHQN01025741.1 12200 12949 + 155 M 43 129 S 0 2 5 0 2 I 0 466 3 0 2 S 1 1 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 12201 12949 155 + . gene_id 2 ; sequence gi|815893711|ref|XP_012249779.1| ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 12201 12331 . + . LHQN01025741.1 exonerate:protein2genome:local exon 12201 12331 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 12332 12333 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 12332 12801 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 12800 12801 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 12802 12949 . + . LHQN01025741.1 exonerate:protein2genome:local exon 12802 12949 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 12201 12949 155 + . alignment_id 2 ; Query gi|815893711|ref|XP_012249779.1| ; Align 12201 13 129 ; Align 12803 57 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893711|ref|XP_012249779.1| PREDICTED: odorant receptor 43a [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 56 -> 104 Target range: 2557 -> 2701 57 : TyrAsnThrPheTrpTyrAsnThrAsnThrArgThrLysLeuLeuLeuValLeuValLeuAr : 77 |||!:!.!! |||||||||!:!::: !!||||||:!! !|||! !||||||!.!||||| TyrSerAlaLysTrpTyrAsnSerSerProArgThrGlnThrLeuTyrValLeuAlaLeuAr 2558 : TATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAAACTCTGTACGTGCTAGCTTTGAG : 2618 78 : gSerCysSerSerAlaProAsnLeuSerAlaGlyGlyLeuLeuValPheAsnLeuLysAsnP : 98 |!!! !!! !!!! !!||| |||!!!||||||||||||:!! !!!.||||||:!!!.!| gArgSerLeuThrProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrP 2619 : GAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGATTTCCTTGAATTTGGAGACTT : 2681 99 : heSerGluIleLeuLysThr : 104 ||:!!|||:!! !! !||| heAlaGluValAsnMetThr 2682 : TTGCCGAGGTAAATATGACA : 2701 vulgar: gi|815893711|ref|XP_012249779.1| 56 104 . LHQN01025741.1 2557 2701 + 112 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 2558 2701 112 + . gene_id 3 ; sequence gi|815893711|ref|XP_012249779.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 2558 2701 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2558 2701 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 2558 2701 112 + . alignment_id 3 ; Query gi|815893711|ref|XP_012249779.1| ; Align 2558 57 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893599|ref|XP_012249301.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 272 Query range: 23 -> 116 Target range: 3032 -> 2555 24 : IleLysAspSerValPheLeuLeuSerGlnLeuIleHisIleLeuLeuLeuThrValGlnGl : 44 :!! ! !!.!!..!|||!!!:!!.!!||| !.!!|||:!!!!!!!!|||!.!|||||||| ValValHisGlyThrPhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGlnGl 3032 : GTTGTGCACGGAACGTTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGG : 2972 45 : yGlnPheValLeuAsnSerAsnAspGluIleIleGluSer{Il} >>>> Target Intr : 58 ||||||||||:!!|||:!! !||||||:!: !!!:!.!{||} 113 bp yGlnPheValIleAsnAlaPheAspGluLeuTyrAspLys{Il}++ 2971 : ACAATTTGTGATAAACGCGTTCGACGAACTGTACGACAAG{AT}gt................ : 2926 59 : on 1 >>>> {e}TyrAspAlaSerTrpTyrAsnAlaAsnArgLysThrGlnLeuLeuPhe : 74 {|}|||!!::!!..!||||||||| !!.!! !!:!|||||| !|||!:! ++{e}TyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyr 2925 : .........ag{A}TACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTAT : 2769 75 : ValLeuSerIleArgSerCysLeuSerProProIleLeuSerAlaGlyGlyLeuLeuAspLe : 95 ||||||:!!:!:||||||||||||!:!||||||:!:|||!!!|||||||||:!! ! || ValLeuAlaLeuArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLe 2768 : GTATTGGCATTGAGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTT : 2706 96 : uAsnLeuLysAsnPheAlaGlu >>>> Target Intron 2 >>>> IleIleLysAl : 106 |||||||::!:::||||||||| 85 bp ||||||||||| uAsnLeuArgSerPheAlaGlu++ ++IleIleLysAl 2705 : GAATCTACGATCGTTCGCAGAGgt.........................agATCATCAAAGC : 2588 107 : aSerValSerTyrPheThrValLeuLysSer : 116 |||||||||||||!:!||||||:!!:!!!!! aSerValSerTyrTyrThrValMetGlnThr 2587 : ATCTGTTTCCTACTACACGGTGATGCAGACC : 2556 vulgar: gi|815893599|ref|XP_012249301.1| 23 116 . LHQN01027734.1 3032 2555 - 272 M 34 102 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 44 132 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 2556 3032 272 - . gene_id 1 ; sequence gi|815893599|ref|XP_012249301.1| ; gene_orientation + LHQN01027734.1 exonerate:protein2genome:local cds 2929 3032 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2929 3032 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 2927 2928 . - . intron_id 1 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 2816 2928 . - . intron_id 1 LHQN01027734.1 exonerate:protein2genome:local splice3 2816 2817 . - . intron_id 0 ; splice_site "AG" LHQN01027734.1 exonerate:protein2genome:local cds 2683 2815 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2683 2815 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 2681 2682 . - . intron_id 2 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 2598 2682 . - . intron_id 2 LHQN01027734.1 exonerate:protein2genome:local splice3 2598 2599 . - . intron_id 1 ; splice_site "AG" LHQN01027734.1 exonerate:protein2genome:local cds 2556 2597 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2556 2597 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 2556 3032 272 - . alignment_id 1 ; Query gi|815893599|ref|XP_012249301.1| ; Align 3033 24 102 ; Align 2815 59 132 ; Align 2598 103 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893711|ref|XP_012249779.1| PREDICTED: odorant receptor 43a [Bombus impatiens] Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 200 Query range: 25 -> 102 Target range: 3020 -> 2676 26 : ValPheLeuLeuAlaGlnLeuValHisIlePhePhePheLeuLeuGlnGlyGlnPheValLe : 46 ..!|||!!!:!!!.!||| ! !!|||:!!||||||!!. !:!!|||||||||||||||:! ThrPhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGlnGlyGlnPheValIl 3020 : ACGTTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGGACAATTTGTGAT : 2960 47 : uAsnAlaAsnAspGluPheAlaGluSer{Il} >>>> Target Intron 1 >>>> { : 56 !|||||| !||||||.!. !!!:!.!{||} 113 bp { eAsnAlaPheAspGluLeuTyrAspLys{Il}++ ++{ 2959 : AAACGCGTTCGACGAACTGTACGACAAG{AT}gt.........................ag{ : 2815 57 : e}TyrAsnThrPheTrpTyrAsnThrAsnThrArgThrLysLeuLeuLeuValLeuValLeu : 76 |}|||.!.:!! ||||||||| !!.! !!||||||:!! !|||! !||||||!.!||| e}TyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeu 2814 : A}TACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTG : 2757 77 : ArgSerCysSerSerAlaProAsnLeuSerAlaGlyGlyLeuLeuValPheAsnLeuLysAs : 97 ||||||||| !!:! !!||| |||!!!|||||||||:!! !..!!!.||||||::!:: ArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSe 2756 : AGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATC : 2694 98 : nPheSerGluIleLeu : 102 :|||:!!|||:!::!! rPheAlaGluValIle 2693 : GTTCGCAGAGGTGATT : 2677 vulgar: gi|815893711|ref|XP_012249779.1| 25 102 . LHQN01027734.1 3020 2676 - 200 M 30 90 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 2677 3020 200 - . gene_id 1 ; sequence gi|815893711|ref|XP_012249779.1| ; gene_orientation + LHQN01027734.1 exonerate:protein2genome:local cds 2929 3020 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2929 3020 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 2927 2928 . - . intron_id 1 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 2816 2928 . - . intron_id 1 LHQN01027734.1 exonerate:protein2genome:local splice3 2816 2817 . - . intron_id 0 ; splice_site "AG" LHQN01027734.1 exonerate:protein2genome:local cds 2677 2815 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2677 2815 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 2677 3020 200 - . alignment_id 1 ; Query gi|815893711|ref|XP_012249779.1| ; Align 3021 26 90 ; Align 2815 57 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893761|ref|XP_012249992.1| PREDICTED: odorant receptor 4-like [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 155 Query range: 280 -> 381 Target range: 4599 -> 4204 281 : IleCysGlyThrSerLeuGluTrpGluAsnAsnAsnAlaThrAlaValLeuIleTyrSerTh : 301 :::|||... !! !|||||| !.!.!:!:!!||| ! !:!!!!!! |||! !.. MetCysAlaCysPhe***GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleVa 4599 : atgtgtgcttgctTCTAGGAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGT : 4539 302 : rIleGlnIleSerCysThrPheSerValPheIleLeuCysTyrIleGlyGlnLeuLeuValA : 322 !! !! :!!:!! !..! :::...|||::::::|||||||||.!!.!. !|||..!! lThrLeuValAlaValValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrG 4538 : AACACTCGTTGCTGTTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAG : 4476 323 : spGlu >>>> Target Intron 1 >>>> AsnArgIleValGlyGlnAlaSerTyrM : 333 !::!! 92 bp ! !! !||||||:!!!.! !|||| luGln++ ++CysLeuLysValGlyGluValValTyrM 4475 : AACAGgt.........................agTGCTTGAAAGTTGGTGAAGTGGTTTACA : 4351 334 : etIleAsnTrpTyrTyrLeuSerArgLysHisMetArgSerLeuIleLeuIleIleAlaMet : 353 ||! !:!!|||||||||||| !!!:!!:!...!!:! !..!|||||||||||||||.!! etThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArg 4350 : TGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGA : 4291 354 : SerAsnTyrProMetLysLeuMetAlaGlyLysMetValGluMetSerLeuAlaThrPheTh : 374 |||||| !:!::!!:!!! |||||||||::: ...||||||||| !|||||| SerAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGl 4290 : TCGAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGG : 4228 375 : rAspValMetLysMetSerMet : 381 !||||||! :!!! !:!:!: yAspValSerGluThrAsnLeu 4227 : CGATGTAAGTGAAACTAATCTT : 4205 vulgar: gi|815893761|ref|XP_012249992.1| 280 381 . LHQN01027980.1 4599 4204 - 155 M 43 129 5 0 2 I 0 88 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4205 4599 155 - . gene_id 1 ; sequence gi|815893761|ref|XP_012249992.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4599 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4599 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4205 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4205 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4205 4599 155 - . alignment_id 1 ; Query gi|815893761|ref|XP_012249992.1| ; Align 4600 281 129 ; Align 4379 324 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893599|ref|XP_012249301.1| PREDICTED: odorant receptor 33b-like [Bombus impatiens] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 231 Query range: 23 -> 116 Target range: 1710 -> 1233 24 : IleLysAspSerValPheLeuLeuSerGlnLeuIleHisIleLeuLeuLeuThrValGlnGl : 44 :!! ! !!.!!..!|||!!!:!!.!!||| !.!!|||:!!!!!!!!|||!.!|||||||| ValValHisGlyThrPhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGlnGl 1710 : GTTGTGCACGGAACGTTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGG : 1650 45 : yGlnPheValLeuAsnSerAsnAspGlu{Il} >>>> Target Intron 1 >>>> { : 54 ||||||||||:!!|||:!! !||||||{:!} 113 bp { yGlnPheValIleAsnAlaPheAspGlu{Le}++ --{ 1649 : ACAATTTGTGATAAACGCGTTCGACGAA{CT}gt.........................ct{ : 1505 55 : e}IleGluSerIleTyrAspAlaSerTrpTyrAsnAlaAsnArgLysThrGlnLeuLeuPhe : 74 !}:!! !!!! !|||!!::!!..!||||||||| !!.!! !!:!|||||| !|||!:! u}ValLeuCysArgTyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyr 1504 : T}GTCCTTTGCAGATACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTAT : 1447 75 : ValLeuSerIleArgSerCysLeuSerProProIleLeuSerAlaGlyGlyLeuLeuAspLe : 95 ||||||:!!:!:||||||||||||!:!||||||:!:|||!!!|||||||||:!! ! || ValLeuAlaLeuArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLe 1446 : GTATTGGCATTGAGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTT : 1384 96 : uAsnLeuLysAsnPheAlaGlu >>>> Target Intron 2 >>>> IleIleLysAl : 106 |||||||::!:::||||||||| 85 bp ||||||||||| uAsnLeuArgSerPheAlaGlu++ ++IleIleLysAl 1383 : GAATCTACGATCGTTCGCAGAGgt.........................agATCATCAAAGC : 1266 107 : aSerValSerTyrPheThrValLeuLysSer : 116 |||||||||||||!:!||||||:!!:!!!!! aSerValSerTyrTyrThrValMetGlnThr 1265 : ATCTGTTTCCTACTACACGGTGATGCAGACC : 1234 vulgar: gi|815893599|ref|XP_012249301.1| 23 116 . LHQN01028732.1 1710 1233 - 231 M 30 90 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 48 144 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1234 1710 231 - . gene_id 1 ; sequence gi|815893599|ref|XP_012249301.1| ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 1619 1710 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1619 1710 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 1617 1618 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 1506 1618 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 1506 1507 . - . intron_id 0 ; splice_site "CT" LHQN01028732.1 exonerate:protein2genome:local cds 1361 1505 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1361 1505 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 1359 1360 . - . intron_id 2 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 1276 1360 . - . intron_id 2 LHQN01028732.1 exonerate:protein2genome:local splice3 1276 1277 . - . intron_id 1 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 1234 1275 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1234 1275 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1234 1710 231 - . alignment_id 1 ; Query gi|815893599|ref|XP_012249301.1| ; Align 1711 24 90 ; Align 1505 55 144 ; Align 1276 103 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|815893711|ref|XP_012249779.1| PREDICTED: odorant receptor 43a [Bombus impatiens] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 200 Query range: 25 -> 102 Target range: 1698 -> 1354 26 : ValPheLeuLeuAlaGlnLeuValHisIlePhePhePheLeuLeuGlnGlyGlnPheValLe : 46 ..!|||!!!:!!!.!||| ! !!|||:!!||||||!!. !:!!|||||||||||||||:! ThrPhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGlnGlyGlnPheValIl 1698 : ACGTTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGGACAATTTGTGAT : 1638 47 : uAsnAlaAsnAspGluPheAlaGluSer{Il} >>>> Target Intron 1 >>>> { : 56 !|||||| !||||||.!. !!!:!.!{||} 113 bp { eAsnAlaPheAspGluLeuTyrAspLys{Il}++ ++{ 1637 : AAACGCGTTCGACGAACTGTACGACAAG{AT}gt.........................ag{ : 1493 57 : e}TyrAsnThrPheTrpTyrAsnThrAsnThrArgThrLysLeuLeuLeuValLeuValLeu : 76 |}|||.!.:!! ||||||||| !!.! !!||||||:!! !|||! !||||||!.!||| e}TyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeu 1492 : A}TACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTG : 1435 77 : ArgSerCysSerSerAlaProAsnLeuSerAlaGlyGlyLeuLeuValPheAsnLeuLysAs : 97 ||||||||| !!:! !!||| |||!!!|||||||||:!! !..!!!.||||||::!:: ArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSe 1434 : AGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATC : 1372 98 : nPheSerGluIleLeu : 102 :|||:!!|||:!::!! rPheAlaGluValIle 1371 : GTTCGCAGAGGTGATT : 1355 vulgar: gi|815893711|ref|XP_012249779.1| 25 102 . LHQN01028732.1 1698 1354 - 200 M 30 90 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1355 1698 200 - . gene_id 1 ; sequence gi|815893711|ref|XP_012249779.1| ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 1607 1698 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1607 1698 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 1605 1606 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 1494 1606 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 1494 1495 . - . intron_id 0 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 1355 1493 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1355 1493 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1355 1698 200 - . alignment_id 1 ; Query gi|815893711|ref|XP_012249779.1| ; Align 1699 26 90 ; Align 1493 57 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350399566|ref|XP_003485570.1| PREDICTED: uncharacterized protein LOC100741772 [Bombus impatiens] Target: KQ414588.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold11, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 279 -> 344 Target range: 776414 -> 776670 280 : HisLeuPheLeuLeuSerLeuProGlyGlnValLeuLeuAspHisCysSerAspLeuA : 299 |||:!!.!!! !|||!!!|||||||||||| !!:!!:!!||| !..!!!::!!: HisValLeuTyrLeuThrLeuProGlyGlnPheValIleAspAlaAsnGluGluIleS 776415 : CACGTACTTTATCTAACTCTTCCAGGACAATTCGTGATCGACGCGAACGAGGAAATCT : 776472 300 : laAspAsn{Il} >>>> Target Intron 1 >>>> {e}TyrSerSerThrTr : 307 !!!!::::{||} 61 bp {|}||||||:!! !|| erGluSer{Il}++ ++{e}TyrSerAlaLeuTr 776473 : CCGAATCG{AT}gt.........................ag{A}TACAGCGCTTTGTG : 776557 308 : pTyrGlyThrProValGlnIleGlnLysValIleTyrValMetGlnIleArgCysLys : 326 ||||..!!:! ! !::!! |||..!:!!.!! :!! ! !! !!.!||| ! pTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeuArgAsnCysLeu 776558 : GTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGTTAAGAAATTGTCTA : 776614 327 : ArgPheCysSerLeuThrAlaGlyGlyLeuTyrGluMetAsnIleGluAsnPhe : 344 ! ! !..!:!!||||||||||||||| ! !||||||:!::!!!:!||| SerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGlnSerPhe 776615 : TCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAAAGTTTC : 776670 vulgar: gi|350399566|ref|XP_003485570.1| 279 344 . KQ414588.1 776414 776670 + 114 M 22 66 S 0 2 5 0 2 I 0 57 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414588.1 exonerate:protein2genome:local gene 776415 776670 114 + . gene_id 1 ; sequence gi|350399566|ref|XP_003485570.1| ; gene_orientation + KQ414588.1 exonerate:protein2genome:local cds 776415 776482 . + . KQ414588.1 exonerate:protein2genome:local exon 776415 776482 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local splice5 776483 776484 . + . intron_id 1 ; splice_site "GT" KQ414588.1 exonerate:protein2genome:local intron 776483 776543 . + . intron_id 1 KQ414588.1 exonerate:protein2genome:local splice3 776542 776543 . + . intron_id 0 ; splice_site "AG" KQ414588.1 exonerate:protein2genome:local cds 776544 776670 . + . KQ414588.1 exonerate:protein2genome:local exon 776544 776670 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local similarity 776415 776670 114 + . alignment_id 1 ; Query gi|350399566|ref|XP_003485570.1| ; Align 776415 280 66 ; Align 776545 303 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825627|ref|XP_012152698.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 71 -> 122 Target range: 204059 -> 204212 72 : LeuGlnGluThrProTyrTyrGluIleCysTyrThrValGlnAlaValSerValTyrM : 91 :::...||||||||||||!:!|||||| !:! !:!!||| !!.!!!!:!! : IleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAlaThrLeuValL 204060 : ataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGT : 204117 92 : etValGlyArgThrTyrPheSerLeuAspAsnIleLeuCysIleIleAsnLeuHisLe : 110 !::!!!.!! ! !|||.!!.!!:!!||||||.!!!!! ! |||:!:! !||||||:! euMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeuIleLeuHisIl 204118 : TAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATAT : 204174 111 : uAlaGlyGlnPheArgMetLeuGlnTyrArgLeuSer : 122 !..!||||||!!...!! |||!:: ||||||:!! eCysGlyGlnLeuGluAsnLeuArgThrArgLeuAla 204175 : TTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCA : 204212 vulgar: gi|805825627|ref|XP_012152698.1| 71 122 . KQ414617.1 204059 204212 + 101 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204060 204212 101 + . gene_id 1 ; sequence gi|805825627|ref|XP_012152698.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204060 204212 . + . KQ414617.1 exonerate:protein2genome:local exon 204060 204212 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204060 204212 101 + . alignment_id 1 ; Query gi|805825627|ref|XP_012152698.1| ; Align 204060 72 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 140 -> 196 Target range: 204059 -> 204227 141 : LeuSerThrThrProTyrPheGluIleMetTyrValLeuGlnValLeuSerLeuTyrG : 160 :::||| !|||||||||||||||||||||!:!:!!||||||:!! !!!!||| IleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAlaThrLeuValL 204060 : ataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGT : 204117 161 : lnCysAspValGlyTyrIleCysPheAspAsnIlePheCysValMetCysLeuHisSe : 179 ! ! :!! !!|||||| !! !!||||||.!!||| ! :!!:!! !||||||! euMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeuIleLeuHisIl 204118 : TAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATAT : 204174 180 : rAlaGlyGlnPheArgIleLeuGlnTyrArgLeuLysAsnValHisGlnLeu : 196 !..!||||||!!...!! !|||!:: |||||| !|||:!! ! !!.||| eCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysHisLeu 204175 : TTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAACATTTG : 204227 vulgar: gi|805825625|ref|XP_012152697.1| 140 196 . KQ414617.1 204059 204227 + 121 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204060 204227 121 + . gene_id 1 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204060 204227 . + . KQ414617.1 exonerate:protein2genome:local exon 204060 204227 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204060 204227 121 + . alignment_id 1 ; Query gi|805825625|ref|XP_012152697.1| ; Align 204060 141 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825623|ref|XP_012152696.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 96 -> 152 Target range: 204059 -> 204227 97 : ValSerMetSerProTyrPheGluIleMetTyrValLeuGlnValLeuSerLeuCysG : 116 :::||| !!!||||||||||||||||||!:!:!!||||||:!! !!!!||| IleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAlaThrLeuValL 204060 : ataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGT : 204117 117 : lnCysAsnIleGlyPheThrCysPheAspAsnIlePheCysIleMetCysLeuHisAl : 135 ! :!! !!!:!! ! !! !!||||||.!!||| ! |||:!! !|||||| euMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeuIleLeuHisIl 204118 : TAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATAT : 204174 136 : aAlaGlyGlnPheArgIleLeuGlnTyrArgLeuLysAsnMetArgGluMet : 152 !..!||||||!!...!! !|||!:: |||||| !|||!!:!:!.!.:!! eCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysHisLeu 204175 : TTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAACATTTG : 204227 vulgar: gi|805825623|ref|XP_012152696.1| 96 152 . KQ414617.1 204059 204227 + 110 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204060 204227 110 + . gene_id 1 ; sequence gi|805825623|ref|XP_012152696.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204060 204227 . + . KQ414617.1 exonerate:protein2genome:local exon 204060 204227 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204060 204227 110 + . alignment_id 1 ; Query gi|805825623|ref|XP_012152696.1| ; Align 204060 97 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350413753|ref|XP_003490100.1| PREDICTED: uncharacterized protein LOC100744254 [Bombus impatiens] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1085 Query range: 0 -> 353 Target range: 1053857 -> 1051978 1 : MetSerLysArgIleThrProGluLysValIleAspIleIleTrpPheSerValAl : 19 |||! !|||!:!:!:||||||||||||||||||||||||||||||||||||||||| MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : aLeuThrPheCysTrpProLeuProIleAsnSerSerGlyLysArgIleLeuValH : 38 ||||.!! !!|||||||||||| !!! !::!:!!||| ! !:!:!!:::... aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 39 : isLysIleLeuGlnIleSerSerValIleSerAlaCysMetLeuLeuLeuProLeu : 56 ||||||||||||||| |||!.!||||||||| !!!:||||||||||||||| heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 57 : LeuTyrSerIleTyrLeuHisLeuAspAspIleIleIleValSerGluCysIleCy : 75 |||||||||! !|||||||||!!!||||||:!!|||:!!:!!|||:!! !!||||| LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 76 : sLeuPheLeuGlyValSerGlnThrIleValGlnSerIleIleCysLeuIleAsnH : 94 ||||! :!!||||||! !|||! !|||:!!|||!!!:!!||||||!!!! !|||: sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCysPheThrAsnT 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGTTTCACCAACT : 1053578 95 : isAspSerLeuGln >>>> Target Intron 1 >>>> HisValValGluG : 103 !!||| !|||||| 613 bp !..:!!:!! !| yrAspLeuLeuGln++ ++ArgIleIleThrG 1053577 : ACGACCTTCTGCAGgt.........................agCGAATAATTACAG : 1052938 104 : luMetIleIleCysValLysGlnAlaArgLysTyrGluArgGluIlePheSerLys : 121 ||||||||! ! !||||||:!!|||!:!:!!!:!||||||||||||.!! !!!. luMetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLeuHisAsn 1052937 : AAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCACAAC : 1052884 122 : HisIleAlaArgCysSerValPheTyrAlaSerSerIleMetCysIleTyrLeuAl : 140 :!!||| !!:!|||!.!:!!||||||!.!.!!|||:!!!!:!! ! !||||||.. TyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrTyrLeuCy 1052883 : TATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACATACCTCTG : 1052827 141 : aAlaThrAlaPheSerIleGlyProAlaIleLeuProLeuSerPheProSerGluA : 159 !||||||..!||| !:!!||||||!.!:!!|||||| ! !!|||||||||...| sAlaThrCysPheValLeuGlyProValValLeuProAsnProPheProSerSerA 1052826 : TGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGCAGTG : 1052770 160 : laGluTyrProPheArgValAsnTyrThrProValTyrValIleIleTyrMetGln : 177 ||||||||||||||||||||||| !||||||:!! !!!.!|||:!!|||:!!!!. laGluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyrLeuHis 1052769 : CAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTACCTGCAC : 1052716 178 : GlnSerIleLeuSerTyrGlnCysValAlaHisIleCysLeuSerMetPheGlySe : 196 ||||||.!!:!!|||!:!|||! ! !||||||||||||:!!|||!!:||||||:! GlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePheGlyAl 1052715 : CAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTTCGGAGC : 1052659 197 : rLeuLeuPheTrpPheThrAlaAlaArgPheGlnCysLeuAlaLeuGluLeuLysA : 215 !||||||.!!|||.!!|||||||||||||||!!.||||||.!!||||||:!!:!!! aLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluValGlnG 1052658 : TCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTTCAAC : 1052602 216 : rgThrAlaAspValArgThrLeuIleValCysValGluLysGlnLeuHisLeuArg : 233 :!!:!:!!..!:!!!.!! !||||||:!!||||||:!!|||||||||! |||||| lnSerSerSerIleHisMetLeuIleIleCysValLysLysGlnLeuLeuLeuArg 1052601 : AAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCTACTACTGAGG : 1052548 234 : {Ar} >>>> Target Intron 2 >>>> {g}TyrAlaLysGluValValAs : 241 {||} 65 bp {|}||||||||||||||||||:! {Ar}++ ++{g}TyrAlaLysGluValValAs 1052547 : {AG}gt.........................ag{G}TACGCCAAAGAAGTGGTTGA : 1052459 242 : nAsnPheArgPheIleValLeuTyrAlaIleGlyValSerThrSerAlaLeuThrL : 260 !..!||||||.!!||||||||| !!||||||!.!:!!|||! !! !|||||||||| pGlyPheArgLeuIleValLeuAsnAlaIleAlaMetSerIleLeuAlaLeuThrL 1052458 : CGGTTTTCGGCTTATAGTACTCAACGCTATAGCAATGAGCATTTTGGCTCTTACTC : 1052402 261 : euCysGlyIleIleLeuLeuVal >>>> Target Intron 3 >>>> AspV : 269 || !!.!!|||! !|||:!!:!! 62 bp !!:: euSerSerIleThrLeuIleMet++ ++GluI 1052401 : TAAGTAGTATTACATTAATAATGgt.........................agGAAA : 1052313 270 : alProProMetValLysIleGlnPheValThrValCysLeuThrValLeuThrGlu : 287 !!||| !!!:||||||:!:||||||||||||||| !!!!!|||||||||.!!||| leProLeuIleValLysValGlnPheValThrValSerPheThrValLeuAlaGlu 1052312 : TACCGTTAATTGTGAAAGTGCAATTCGTAACTGTAAGCTTCACTGTACTCGCAGAA : 1052259 288 : IleTyrValTyrAlaTrpSerAlaAspTyrMetLysAspMet >>>> Target : 302 ||||||:!!||||||||||||||||||||||||||||||||| 80 IleTyrMetTyrAlaTrpSerAlaAspTyrMetLysAspMet++ 1052258 : ATTTATATGTACGCATGGTCAGCTGACTACATGAAAGACATGgt............ : 1052212 303 : Intron 4 >>>> SerIleAsnValSerArgSerAlaTyrAspIleIleTrpTy : 315 bp ||| !!!.||||||!:!|||!.!||||||:!!! ||||| ++SerAlaLysValSerGlnSerValTyrAspLeuThrTrpTy 1052211 : .............agAGTGCAAAGGTTTCACAAAGTGTGTATGATTTAACGTGGTA : 1052095 316 : rLysGlnLysLeuGluMetGlnLysAsnLeuLeuThrMetLeuGluCysGlnGluP : 334 | !|||! !||||||||||||||||||:::||| :::|||! ! !||||||| rGlyGlnThrLeuGluMetGlnLysAsnValLeuTyrIleLeuValHisGlnGluP 1052094 : CGGACAAACATtggaaatgcagaaaaatgtattatacatattgGTACACCAAGAAC : 1052038 335 : roIleThrLeuSerValSerCysIleIleProGluLeuSerLeuArgTyrPheCys : 352 ||:!!! !||||||||||||||||||:!:|||||||||||||||||||||!:!||| roValIleLeuSerValSerCysIleValProGluLeuSerLeuArgTyrTyrCys 1052037 : CGGTAATTCTGTCAGTTAGTTGCATCGTGCCGGAGCTTTCTCTTCGTTATTATTGC : 1051984 353 : Ser : 353 ||| Ser 1051983 : TCG : 1051979 vulgar: gi|350413753|ref|XP_003490100.1| 0 353 . KQ414618.1 1053857 1051978 - 1085 M 98 294 5 0 2 I 0 609 3 0 2 M 135 405 S 0 2 5 0 2 I 0 61 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 34 102 5 0 2 I 0 76 3 0 2 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1051979 1053857 1085 - . gene_id 1 ; sequence gi|350413753|ref|XP_003490100.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1053564 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053564 1053857 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1053562 1053563 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052951 1053563 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052951 1052952 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052544 1052950 . - . KQ414618.1 exonerate:protein2genome:local exon 1052544 1052950 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052542 1052543 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052479 1052543 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1052479 1052480 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052379 1052478 . - . KQ414618.1 exonerate:protein2genome:local exon 1052379 1052478 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052377 1052378 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052317 1052378 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1052317 1052318 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052215 1052316 . - . KQ414618.1 exonerate:protein2genome:local exon 1052215 1052316 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052213 1052214 . - . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052135 1052214 . - . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 1052135 1052136 . - . intron_id 3 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051979 1052134 . - . KQ414618.1 exonerate:protein2genome:local exon 1051979 1052134 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1051979 1053857 1085 - . alignment_id 1 ; Query gi|350413753|ref|XP_003490100.1| ; Align 1053858 1 294 ; Align 1052951 99 405 ; Align 1052478 235 99 ; Align 1052317 268 102 ; Align 1052135 302 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350413753|ref|XP_003490100.1| PREDICTED: uncharacterized protein LOC100744254 [Bombus impatiens] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 452 Query range: 0 -> 234 Target range: 1030017 -> 1028765 1 : MetSerLysArgIleThrProGluLysValIleAspIleIleTrpPheSerValAl : 19 |||! !||| ! !:!||||||!:!!.!|||..!:!!:!! !!! !..!|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1030017 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1029963 20 : aLeuThrPheCysTrpProLeuProIleAsnSerSerGlyLysArgIleLeuValH : 38 |!!!|||! !||||||||||||||| !..:!!!!! !...! !:!:||| ! aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1029962 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1029906 39 : isLysIleLeuGlnIleSerSerValIleSerAlaCysMetLeuLeuLeuProLeu : 56 !|||||||||::! !! ! !:!!:!!!:!|||! :!!|||!!!||||||||| heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1029905 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1029852 57 : LeuTyrSerIleTyrLeuHisLeuAspAspIleIleIleValSerGluCysIleCy : 75 ||||||:!!:!::!!:!!|||! !:!!||| ! ! !|||:!!:!!..! !|| LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1029851 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1029795 76 : sLeuPheLeuGlyValSerGlnThrIleValGlnSerIleIleCysLeuIleAsnH : 94 |||| |||!.!::: ||| ... |||::!.!!:!!|||:!! !.!.: sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1029794 : CCTGACGCTTGCCctcgtgcaaatatttttccagacTTTCGTTTGCATCGGCCAAT : 1029738 95 : isAspSerLeuGln >>>> Target Intron 1 >>>> HisValValGluG : 103 !!||| !!!!||| 550 bp ! :!!:!!|||| yrAspHisPheGln++ ++LysLeuIleGluG 1029737 : ACGATCATTTTCAGgt.........................agAAACTAATCGAAG : 1029161 104 : luMetIleIleCysValLysGlnAlaArgLysTyrGluArgGluIlePheSerLys : 121 |||||! |||||| !:!! !|||!:! !|||||||||!!::!!|||..!::! luMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheGlnArg 1029160 : AAATGAAGATTTGCTGTGAAACAGCGAAACCATACGAAAGAGACGTCTTTCAACGA : 1029107 122 : HisIleAlaArgCysSerValPheTyrAlaSerSerIleMetCysIleTyrLeuAl : 140 :!!:!!! !!:!! !|||:!!||||||!.!!!!!!! !!! .!!||||||.! TyrValAspLysTyrSerLeuPheTyrValThrCysSerSerTrpPheTyrLeuTh 1029106 : TACGTCGATAAATACTCTTTATTTTACGTAACATGTTCGTCGTGGTTTTACTTAAC : 1029050 141 : aAlaThrAlaPheSerIleGlyProAlaIleLeuProLeuSerPheProSerGluA : 159 !|||..! !.!. !:!:||| ! !|||:!! !! ! !!||||||!!!.!.| rAlaValIleMetValLeuGlySerArgIleIleSerAspProPheProThrAsnA 1029049 : AGCAGTTATTATGGTTCTGGGAAGTCGGATTATATCTGATCCTTTTCCAACCAACG : 1028993 160 : laGluTyrProPheArgValAsnTyrThrProValTyrValIleIleTyrMetGln : 177 ||! !|||||||||! !||||||!:! !|||:!! !||||||!:!|||!!. laValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHis 1028992 : CCGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGTATCATTTTTATGCAC : 1028939 178 : GlnSerIleLeuSerTyrGlnCysValAlaHisIleCysLeuSerMetPheGlySe : 196 ||||||.!!:!!.!! ||||||!.!||||||! ! !!:!!!:!:!!.!. !:! GlnSerPheValGlyIleGlnCysAlaAlaHisThrSerMetAsnValLeuThrAl 1028938 : CAATCGTTCGTTGGCATACAGTGTGCTGCACACACTAGTATGAATGTGCTAACTGC : 1028882 197 : rLeuLeuPheTrpPheThrAlaAlaArgPheGlnCysLeuAlaLeuGluLeuLysA : 215 !||||||!!. |||.!!||||||||||||:!! ||| !:!!||||||!:!! aLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuMetMetGluLeuArgA 1028881 : ATTGTTATTACTATTTGCTGCAGCTCGTTTCGAGATACTGATGATGGAGCTGAGGA : 1028825 216 : rgThrAlaAspValArgThrLeuIleValCysValGluLysGlnLeuHisLeuArg : 233 .!..!::!|||:!!..!||||||||| !|||:!!:!!||| ! ! ! !:!!||| snValSerAspIleGluThrLeuIleLysCysMetLysLysTyrSerIleValArg 1028824 : ATGTCAGTGACATTGAAACACTGATTAAATGTATGAAAAAGTATTCGATCGTACGG : 1028771 234 : Arg : 234 ||| Arg 1028770 : AGG : 1028766 vulgar: gi|350413753|ref|XP_003490100.1| 0 234 . KQ414618.1 1030017 1028765 - 452 M 98 294 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028766 1030017 452 - . gene_id 2 ; sequence gi|350413753|ref|XP_003490100.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1029724 1030017 . - . KQ414618.1 exonerate:protein2genome:local exon 1029724 1030017 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1029722 1029723 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1029174 1029723 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1029174 1029175 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028766 1029173 . - . KQ414618.1 exonerate:protein2genome:local exon 1028766 1029173 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028766 1030017 452 - . alignment_id 2 ; Query gi|350413753|ref|XP_003490100.1| ; Align 1030018 1 294 ; Align 1029174 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350413753|ref|XP_003490100.1| PREDICTED: uncharacterized protein LOC100744254 [Bombus impatiens] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 405 Query range: 0 -> 234 Target range: 1039184 -> 1037932 1 : MetSerLysArgIleThrProGluLysValIleAspIleIleTrpPheSerValAl : 19 |||! !||| ! !:!||||||!:!!.!|||..!:!!:!! !!! !..!|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1039184 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1039130 20 : aLeuThrPheCysTrpProLeuProIleAsnSerSerGlyLysArgIleLeuValH : 38 |!!!|||! !||||||||||||||| !..:!!!!! !...! !:!:||| ! aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1039129 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1039073 39 : isLysIleLeuGlnIleSerSerValIleSerAlaCysMetLeuLeuLeuProLeu : 56 !|||||||||::! !! ! !:!!:!!!:!|||! :!!|||!!!||||||||| heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1039072 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1039019 57 : LeuTyrSerIleTyrLeuHisLeuAspAspIleIleIleValSerGluCysIleCy : 75 ||||||:!!:!::!!:!!|||! !:!!||| ! ! !|||:!!:!!..! !|| LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1039018 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1038962 76 : sLeuPheLeuGlyValSerGlnThrIleValGlnSerIleIleCysLeuIleAsnH : 94 |||| |||!.!::: ||| ... |||:::...:::|||:!! !.!.: sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1038961 : CCTGACGCTTGCTctcgtgcaaatatttttccaaactttcgttTGCATCGGTCAAT : 1038905 95 : is{A} >>>> Target Intron 1 >>>> {sp}SerLeuGlnHisValVal : 101 !!{|} 550 bp {||}!!!|||||| ! :!!:!! yr{A}-+ -+{sp}ThrLeuGlnLysLeuIle 1038904 : AC{G}at.........................tg{AC}ACGTTGCAGAAACTAATC : 1038334 102 : GluGluMetIleIleCysValLysGlnAlaArgLysTyrGluArgGluIlePheSe : 120 |||||||||! |||||| !:!! !|||!:! !|||||||||!!::!!|||.. GluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheGl 1038333 : GAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGACGTCTTCCA : 1038277 121 : rLysHisIleAlaArgCysSerValPheTyrAlaSerSerIleMetCysIleTyrL : 139 !::!:!!:!! !!:! |||:::|||||| ::: !! !! .!!|||| nArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheTyrL 1038276 : ACGATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTTACT : 1038220 140 : euAlaAlaThrAlaPheSerIleGlyProAlaIleLeuProLeuSerPheProSer : 157 ||.!!|||! ! !.!. !:!!||| ! !:!!:!! !! ! !!||||||!!! euThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPheProThr 1038219 : TAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACC : 1038166 158 : GluAlaGluTyrProPheArgValAsnTyrThrProValTyrValIleIleTyrMe : 176 .!.|||! !|||||||||! !||||||!:! !|||:!! !||||||!:!|| AsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMe 1038165 : AACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTAT : 1038109 177 : tGlnGlnSerIleLeuSerTyrGlnCysValAlaHisIleCysLeuSerMetPheG : 195 |!!.||||||.!!:!!.!! ||||||!.!|||||| ! !!:!!!:!:!!.!!. tHisGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuS 1038108 : GCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTT : 1038052 196 : lySerLeuLeuPheTrpPheThrAlaAlaArgPheGlnCysLeuAlaLeuGluLeu : 213 .!:!!||||||!!. ||||||.!!|||||||||::: ||| ! !|||||| erAlaLeuLeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeu 1038051 : CTGCACTGTTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTG : 1037998 214 : LysArgThrAlaAspValArgThrLeuIleValCysValGluLysGlnLeuHisLe : 232 !:!!.!..! !|||:!!..!||||||||| ! !!:!!:!!||| ! ! ! !:! ArgAsnValAsnAspIleGluThrLeuIleLysSerMetLysLysTyrSerThrVa 1037997 : AGGAATGTCAATGATATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGT : 1037941 233 : uArgArg : 234 !|||||| lArgArg 1037940 : GCGGAGG : 1037933 vulgar: gi|350413753|ref|XP_003490100.1| 0 234 . KQ414618.1 1039184 1037932 - 405 M 94 282 S 0 1 5 0 2 I 0 546 3 0 2 S 1 2 M 139 417 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037933 1039184 405 - . gene_id 3 ; sequence gi|350413753|ref|XP_003490100.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1038902 1039184 . - . KQ414618.1 exonerate:protein2genome:local exon 1038902 1039184 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1038900 1038901 . - . intron_id 1 ; splice_site "AT" KQ414618.1 exonerate:protein2genome:local intron 1038352 1038901 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1038352 1038353 . - . intron_id 0 ; splice_site "TG" KQ414618.1 exonerate:protein2genome:local cds 1037933 1038351 . - . KQ414618.1 exonerate:protein2genome:local exon 1037933 1038351 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037933 1039184 405 - . alignment_id 3 ; Query gi|350413753|ref|XP_003490100.1| ; Align 1039185 1 282 ; Align 1038350 96 417 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350413753|ref|XP_003490100.1| PREDICTED: uncharacterized protein LOC100744254 [Bombus impatiens] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 0 -> 98 Target range: 1058517 -> 1058223 1 : MetSerLysArgIleThrProGluLysValIleAspIleIleTrpPheSerValAl : 19 |||!!!|||!!!||||||||||||:!!!.!|||....!!! .!.|||||||| MetArgLysSerIleThrProGluGlnAlaIleSerPheThrLysLeuSerValAl 1058517 : ATGAGGAAAAGTATAACGCCGGAACAAGCGATCTCGTTCACGAAACTGAGCGTCGC : 1058463 20 : aLeuThrPheCysTrpProLeuProIleAsnSerSerGlyLysArgIleLeuValH : 38 |:!!|||! !! ||||||! ! !! ! :!!!!! !!! !:!:!!|||:!! aValThrCysSerTrpProProSerProLeuAlaThrArgThrGlnValLeuLeuP 1058462 : TGTAACTTGTTCGTGGCCACCGTCACCTCTGGCGACCAGAACTCAAGTTTTGCTCT : 1058406 39 : isLysIleLeuGlnIleSerSerValIleSerAlaCysMetLeuLeuLeuProLeu : 56 !!!.! ||| !! !!!!:!! !!:!!|||.!! ! !||||||||||||||| heAsnThrLeuTrpSerThrAlaPheValSerThrIleAlaLeuLeuLeuProLeu 1058405 : TTAATACGTTGTGGAGCACAGCATTCGTTAGCACCATCGCGCTGCTTTTGCCGCTA : 1058352 57 : LeuTyrSerIleTyrLeuHisLeuAspAspIleIleIleValSerGluCysIleCy : 75 ||| !.!!|||||| !:!!! ! ! ||| !||||||:!!.!!:!! :!! ! LeuSerGlyIleTyrGluTyrArgLysAspProIleIleLeuGlyLysThrValSe 1058351 : TTGAGCGGAATTTACGAGTACCGTAAAGACCCCATCATTCTTGGGAAAACAGTCAG : 1058295 76 : sLeuPheLeuGlyValSerGlnThrIleValGlnSerIleIleCysLeuIleAsnH : 94 !||| !! !!.!|||:!!|||..! !:!!:!!! !|||!!:|||! !.!!.!.! rLeuAlaSerAlaValAlaGlnValAlaIleLysMetIleMetCysArgPheGlnG 1058294 : CCTCGCCTCGGCTGTCGCCCAGGTGGCAATCAAAATGATAATGTGCCGTTTCCAGC : 1058238 95 : isAspSerLeuGln : 98 !. ! ..!!!!||| lnLysGlnPheGln 1058237 : AGAAGCAATTCCAG : 1058224 vulgar: gi|350413753|ref|XP_003490100.1| 0 98 . KQ414618.1 1058517 1058223 - 139 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1058224 1058517 139 - . gene_id 4 ; sequence gi|350413753|ref|XP_003490100.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1058224 1058517 . - . KQ414618.1 exonerate:protein2genome:local exon 1058224 1058517 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1058224 1058517 139 - . alignment_id 4 ; Query gi|350413753|ref|XP_003490100.1| ; Align 1058518 1 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819494|ref|XP_012149881.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 613 Query range: 162 -> 338 Target range: 1401021 -> 1402805 163 : IleMetHisValGlyCysHisValAspValMetCysGlnAlaIleThrAspAspPr : 181 :!!:!:|||:!!||||||!!.:!!|||:!!||||||!:! !:!: !|||! ! ! ValLeuHisLeuGlyCysGlnIleAspIleMetCysArgAsnLeuLeuAspValSe 1401022 : GTACTTCATCTAGGATGTCAAATCGACATCATGTGCCGAAATTTGCTAGACGTTTC : 1401076 182 : oLeuArgThrLysGluGlnLeuAsnPhePheIleAsnArgHisLysGluIleIleL : 200 !!!!!:! ! :::|||:::...||||||||||||||||||:!!|||||||||: rPheLysAspGlyLysGlnIleLysPhePheIleAsnArgHisGlnGluIleIleV 1401077 : CTTCAAAGACggaaaacaaataaaattcttcattaACAGACATCAGGAAATTATTG : 1401133 201 : euPheValAspLysIleGluLysLeuPheThrTyrMetAlaLeuSerGlnLeuVal : 218 !!|||!.!!!:!:!|||||||||||||||||||||||||||||||||||||||||| alPheAlaGluArgIleGluLysLeuPheThrTyrMetAlaLeuSerGlnLeuVal 1401134 : TTTTTGCAGAAAGAATTGAGAAACTTTTTACATACATGGCTCTCAGTCAACTTGTG : 1401187 219 : SerAsnThrLeuIleThrCysCysValGlyTyrLeuIleValMet >>>> Targ : 234 |||||||||:!!|||! !||||||||||||!:!|||:!!|||!!: SerAsnThrIleIleIleCysCysValGlyPheLeuValValIle++ 1401188 : TCCAATACGATAATTATATGTTGCGTAGGATTTCTCGTTGTAATTgt......... : 1401237 235 : et Intron 1 >>>> SerIleHisThrAlaAsnGlyProAlaLeuLeuIleLy : 246 83 bp :!!:!!|||! !! !|||||| ! !!||||||:!!|| ++AlaValHisIleAspAsnGlyValProLeuLeuLeuLy 1401238 : ................aggCAGTACATATCGACAATGGAGTTCCTCTGTTACTCAa : 1401354 247 : sSerValLeuPheTyrIleAlaIleCysLeuGluAlaPheIleTyrCysPheAlaG : 265 ||||:::|||||||||:::!.!||||||||||||||||||||||||||||||!.!| sSerLeuLeuPheTyrValValIleCysLeuGluAlaPheIleTyrCysPheValG 1401355 : atctcttttattttatgtgGTTATTTGTTTAGAAGCGTTTATATACTGCTTTGTCG : 1401411 266 : lyGluTyrLeuSerIleLys >>>> Target Intron 2 >>>> SerLysL : 274 |||||||||||||||||||| 1004 bp |||:!!| lyGluTyrLeuSerIleLys++ ++SerGlnL 1401412 : GAGAATATCTCAGTATCAAGgt.........................agAGCCAAC : 1402442 275 : euIleGlyAspThrAlaTyrGluSerAlaTrpTyrAspLeuArgProSerGluAsn : 292 ||||||||:!!||||||||||||! ! !||||||||||||||| !!!!!|||!:! euIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSer 1402443 : TAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAGC : 1402496 293 : ArgLeuLeuIleLeuLeuIleLeuArgSerGlnLysGlyPheThrPheThrPheGl : 311 !:!|||||||||! !:!!|||||||||||||||||||||||||||||||||||||| GlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGl 1402497 : CAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACGTttacttttgg : 1402553 312 : yLysPheSerSerProSerLeuGluSerPheThrSer >>>> Target Intro : 324 ||||||||||||| !||||||||||||||||||:!! 169 bp yLysPheSerSerLeuSerLeuGluSerPheThrAla++ 1402554 : aaaattttcaagtctCTCCTTGGAAAGCTTTACGGCCgt................. : 1402594 325 : n 3 >>>> IleMetLysValSerAlaSerTyrIleSerValLeuLeuAlaMet : 338 ||||||||||||||||||||||||||||||||||||||||||:!! ++IleMetLysValSerAlaSerTyrIleSerValLeuLeuAlaVal 1402595 : ........agATCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTG : 1402805 vulgar: gi|805819494|ref|XP_012149881.1| 162 338 . KQ414716.1 1401021 1402805 + 613 M 71 213 5 0 2 I 0 79 3 0 2 M 38 114 5 0 2 I 0 1000 3 0 2 M 52 156 5 0 2 I 0 165 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401022 1402805 613 + . gene_id 1 ; sequence gi|805819494|ref|XP_012149881.1| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401022 1401234 . + . KQ414716.1 exonerate:protein2genome:local exon 1401022 1401234 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401235 1401236 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401235 1401317 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1401316 1401317 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1401318 1401431 . + . KQ414716.1 exonerate:protein2genome:local exon 1401318 1401431 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401432 1401433 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401432 1402435 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1402434 1402435 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402436 1402591 . + . KQ414716.1 exonerate:protein2genome:local exon 1402436 1402591 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1402592 1402593 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1402592 1402760 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1402759 1402760 . + . intron_id 2 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402761 1402805 . + . KQ414716.1 exonerate:protein2genome:local exon 1402761 1402805 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401022 1402805 613 + . alignment_id 1 ; Query gi|805819494|ref|XP_012149881.1| ; Align 1401022 163 213 ; Align 1401318 234 114 ; Align 1402436 272 156 ; Align 1402761 324 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819494|ref|XP_012149881.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 511 Query range: 162 -> 324 Target range: 1408216 -> 1409208 163 : IleMetHisValGlyCysHisValAspValMetCysGlnAlaIleThrAspAspPr : 181 :!::!:|||:!!||||||!!.:!!|||:!!|||||||||.!!:!!! !!!:! !|| ValLeuHisLeuGlyCysGlnIleAspIleMetCysGlnThrLeuLysGluValPr 1408217 : GTGCTTCATCTAGGTTGTCAAATCGATATTATGTGCCAGACATTAAAGGAGGTTCC : 1408271 182 : oLeuArgThrLysGluGlnLeuAsnPhePheIleAsnArgHisLysGluIleIleL : 200 |! !!:!!.!||| ||||||!..|||||||||!:!||||||:!!:!!||||||: oTyrLysAsnLysThrGlnLeuArgPhePheIleSerArgHisGlnGlnIleIleI 1408272 : TTATAAGAATAAAACTCAACTGAGATTCTTCATCAGCAGACATCAACAGATCATCA : 1408328 201 : euPheValAspLysIleGluLysLeuPheThrTyrMetAlaLeuSerGlnLeuVal : 218 !!|||!.!!!:!:!|||||||||||||||||||||:!:|||||||||||||||:!! lePheAlaGluArgIleGluLysLeuPheThrTyrLeuAlaLeuSerGlnLeuLeu 1408329 : TATTTGCAGAGAGAATAGAAAAACTGTTTACGTATCTAGCACTTAGTCAACTTCTC : 1408382 219 : SerAsnThrLeuIleThrCysCysValGlyTyrLeuIleValMet >>>> Targ : 234 |||||||||||||||||||||||||||||||||:!!|||!.!.!. SerAsnThrLeuIleThrCysCysValGlyTyrIleIleAlaPhe++ 1408383 : TCGAATACCCTAATTACTTGCTGCGTGGGTTATATTATCGCATTTgt......... : 1408432 235 : et Intron 1 >>>> SerIleHisThrAlaAsnGlyProAlaLeuLeuIleLy : 246 92 bp :!!:!!!!.!.! !|||||| ! !:!!|||||||| ++AlaLeuGlnAsnAsnAsnGlyPheLysMetLeuIleLy 1408433 : ................agGCACTACAAAATAATAATGGATTTAAAATGTTGATCAA : 1408558 247 : sSerValLeuPheTyrIleAlaIleCysLeuGluAlaPheIleTyrCysPheAlaG : 265 |! !|||:!!!:!|||!!:|||:!:|||! !||||||||||||||||||||||||| sPheValValTyrTyrMetAlaValCysSerGluAlaPheIleTyrCysPheAlaG 1408559 : ATTTGTTGTATATTACATGGCTGTGTGCTCAGAAGCGTTCATATACTGCTTTGCTG : 1408615 266 : ly{Gl} >>>> Target Intron 2 >>>> {u}TyrLeuSerIleLysSer : 272 ||{!!} 414 bp {:} !:!!..!.!!:::||| ly{As}++ +-{p}IleIleAspPheGlnSer 1408616 : GA{GA}gt.........................aa{T}ATCATTGATTTTcagagt : 1409050 273 : LysLeuIleGlyAspThrAlaTyrGluSerAlaTrpTyrAspLeuArgProSerGl : 291 |||||||||||||||||||||||||||! ! !||||||:!!:!!!.! !!!.!|| LysLeuIleGlyAspThrAlaTyrGluPheLeuTrpTyrAsnMetHisSerLysGl 1409051 : aaactgattggagACACGGCGTATGAATTTCTTTGGTATAATATGCATTCGAAGGA : 1409107 292 : uAsnArgLeuLeuIleLeuLeuIleLeuArgSerGlnLysGlyPheThrPheThrP : 310 |!:!||||||:!!:!:|||:!!|||||||||||||||||||||||||||||||||| uSerArgLeuMetLeuLeuValIleLeuArgSerGlnLysGlyPheThrPheThrP 1409108 : AAGCCGACTTATGTTGCTTGTAATACTACGATCACAGAAAGGATTTACtttcactt : 1409164 311 : heGlyLysPheSerSerProSerLeuGluSerPheThrSerIle : 324 |||||||||||:::|||! !|||:!!|||||||||.!!.!!:!! heGlyLysPheAlaSerLeuSerMetGluSerPheAlaGlyVal 1409165 : ttggaaaatttgcaagtCTTTCCATGGAAAGTTTTGCAGGCGTA : 1409208 vulgar: gi|805819494|ref|XP_012149881.1| 162 324 . KQ414716.1 1408216 1409208 + 511 M 71 213 5 0 2 I 0 88 3 0 2 M 32 96 S 0 2 5 0 2 I 0 410 3 0 2 S 1 1 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408217 1409208 511 + . gene_id 2 ; sequence gi|805819494|ref|XP_012149881.1| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408217 1408429 . + . KQ414716.1 exonerate:protein2genome:local exon 1408217 1408429 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408430 1408431 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408430 1408521 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1408520 1408521 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1408522 1408619 . + . KQ414716.1 exonerate:protein2genome:local exon 1408522 1408619 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408620 1408621 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408620 1409033 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1409032 1409033 . + . intron_id 1 ; splice_site "AA" KQ414716.1 exonerate:protein2genome:local cds 1409034 1409208 . + . KQ414716.1 exonerate:protein2genome:local exon 1409034 1409208 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408217 1409208 511 + . alignment_id 2 ; Query gi|805819494|ref|XP_012149881.1| ; Align 1408217 163 213 ; Align 1408522 234 96 ; Align 1409035 267 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819494|ref|XP_012149881.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 384 Query range: 18 -> 163 Target range: 1405233 -> 1406100 19 : LysPheValGlyLeuLeuAspMetIleAspAsnLeuSerIleAlaMetProPheSe : 37 |||!:! ! !|||:!!|||! :!!|||||||||||||||..!|||||||||!! LysTyrAsnThrLeuValAspThrValAspAsnLeuSerIleCysMetProPheTh 1405234 : AAATATAACACTCTTGTGGATACAGTAGATAATTTGAGCATTTGCATGCCATTCAC : 1405288 38 : rLeuValCysIleLysLeuIleValValTrpThrAsnHis{Gl} >>>> Targe : 51 !||||||||||||||||||.!!|||!.!||||||:!!!.!{||} rLeuValCysIleLysLeuPheValAlaTrpThrHisArg{Gl}++ 1405289 : TTTAGTGTGCATCAAATTATTTGTTGCTTGGACACATCGC{GG}gt.......... : 1405334 52 : t Intron 1 >>>> {y}ValLeuArgAspIleLeuSerThrValGluGluAsp : 63 429 bp {|}:!!||| !||||||:!!||||||:!!||||||||| ++{y}LeuLeuTyrAspIleIleSerThrMetGluGluAsp 1405335 : ...............ag{t}CTACTTTACGACATTATCTCGACCATGGAAGAAGAC : 1405795 64 : CysLysLysTyrAlaValIleAspThrAsnAsnLeuIleProLysThrAlaSerLe : 82 ||||||||||||||||||:::||||||...||||||||| ||||||||| !|| CysLysLysTyrAlaValLeuAspThrLysAsnLeuIleSerLysThrAlaHisLe 1405796 : TGTAAAAAGTACGCTGTTCttgatacaaaaaatttaatatcaaaaaCAGCACATCT : 1405852 83 : uSerValTyrPheThrIleMetValMetSerSerTyrValValSerAlaValPheT : 101 |||| !! !!.|||! !!!:|||!!:!!!! !! !||| !|||.!!!.!! !| uSerPheArgLeuThrAsnIleValIleCysIleCysValSerSerThrAlaCysT 1405853 : ATCTTTTCGATTAACCAATATAGTGATATGTATCTGTGTATCATCCACGGCATGTT : 1405909 102 : yrLeuThrGlyThrLeuThr<->GlnAspThrAsnAsnAsnSerThrArgArgLeu : 118 || !! !|||..!|||.!! ||| ||||||! !..:!! !!|||..!||| yrAlaIleGlyValLeuAlaProGlnArgThrAsnIleThrAlaProArgGluLeu 1405910 : ATGCAATTGGAGTTTTGGCGCCACAAAGGACTAATATAACAGCACCTCGAGAACTT : 1405963 119 : LeuLeuGlnMetAspLeuProPheAspThrSerGluSerProThrTyrGluLeuVa : 137 |||:!!:!!|||||||||||||||:!!|||!:!.!.||||||! !||||||||||| LeuIleLysMetAspLeuProPheAsnThrAsnAsnSerProIleTyrGluLeuVa 1405964 : TTGATAAAAATGGACTTGCCATTTAATACGAACAATTCGCCTATTTACGAGCTGGT : 1406020 138 : lLeuSerAlaGlnPheLeuHisLeuValThrSerAlaLeuThrPheGlyValPheS : 156 |:!! ! !|||!:!||| ! !|||:!!!!!|||!!!|||||||||||||||| lIleValLeuGlnTyrLeuCysLysValSerThrAlaPheThrPheGlyValPheS 1406021 : AATAGTTTTACAATACCTATGCAAAGTATCGACAGCTTTTACGTTTGGTGTATTCA : 1406077 157 : erAlaLeuLeuValMetValIle : 163 ||::!||||||:!!|||:!!:!! erSerLeuLeuLeuMetMetVal 1406078 : GCAGTCTGCTTTTGATGATGGTA : 1406100 vulgar: gi|805819494|ref|XP_012149881.1| 18 163 . KQ414716.1 1405233 1406100 + 384 M 32 96 S 0 2 5 0 2 I 0 425 3 0 2 S 1 1 M 56 168 G 0 3 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1405234 1406100 384 + . gene_id 3 ; sequence gi|805819494|ref|XP_012149881.1| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1405234 1405331 . + . KQ414716.1 exonerate:protein2genome:local exon 1405234 1405331 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1405332 1405333 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1405332 1405760 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1405759 1405760 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1405761 1406100 . + . KQ414716.1 exonerate:protein2genome:local exon 1405761 1406100 . + . insertions 3 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1405234 1406100 384 + . alignment_id 3 ; Query gi|805819494|ref|XP_012149881.1| ; Align 1405234 19 96 ; Align 1405762 52 168 ; Align 1405933 108 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819494|ref|XP_012149881.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 309 Query range: 49 -> 163 Target range: 1398613 -> 1398958 50 : HisGlyValLeuArgAspIleLeuSerThrValGluGluAspCysLysLysTyrAl : 68 |||.!!|||!!!!!!|||||||||||||||:!!||||||||||||:!!|||||||| HisSerValPheSerAspIleLeuSerThrMetGluGluAspCysGlnLysTyrAl 1398614 : CACAGCGTATTTAGTGACATTTTATCAACCATGGAAGAGGATTGTCAGAAATATGC : 1398668 69 : aValIleAspThrAsnAsnLeuIleProLysThrAlaSerLeuSerValTyrPheT : 87 |!.!||||||! !|||!!.|||!!: !!||||||!.!...|||||| |||...| aAlaIleAspIleAsnLysLeuMetSerLysThrGlyGlnLeuSerPheTyrLeuT 1398669 : TGCTATAGATATAAATAAGTTGATGTCAAAAACCGGACAgctatctttttatttaa : 1398725 88 : hrIleMetValMetSerSerTyrValValSerAlaValPheTyrLeuThrGlyThr : 105 || !!:|||||||||! !|||:!!!.!||||||!.!||||||:!!|||..!||| hrSerIleValMetSerLeuTyrMetAlaSerAlaAlaPheTyrIleThrAsnThr 1398726 : caagcATTGTTATGTCTTTGTATATGGCATCTGCAGCATTTTACATAACTAATACT : 1398779 106 : LeuThrGlnAspThrAsnAsnAsnSer<->ThrArgArgLeuLeuLeuGlnMetAs : 123 :!! ! .!. !|||||| !||| :!!|||..!||||||:!!:!!||||| IleGlyPheGlnGlyAsnAsnAlaSerValSerArgGluLeuLeuMetLysMetAs 1398780 : ATTGGATTTCAAGGAAATAATGCTTCAGTATCTCGGGAGCTCCTTATGAAAATGGA : 1398836 124 : pLeuProPheAspThrSerGluSerProThrTyrGluLeuValLeuSerAlaGlnP : 142 ||||||||||!!:|||||||||||||||!.!||||||||||||:!!!!!.!!||| pLeuProPheGluThrSerGluSerProAsnTyrGluLeuValValThrThrGlnV 1398837 : TTTGCCTTTCGAGACCAGCGAATCGCCGAATTACGAACTTGTAGTAACTACACAGG : 1398893 143 : heLeuHisLeuValThrSerAlaLeuThrPheGlyValPheSerAlaLeuLeuVal : 160 !!||| !! !:!!:!! !|||:!!.!!!:!|||!.!|||!:!|||||||||:!! alLeuIleHisLeuSerValAlaValAlaTyrGlyAlaPheAsnAlaLeuLeuLeu 1398894 : TCCTTATTCACTTATCAGTGGCCGTAGCATACGGTGCATTCAATGCTCTTCTCTTA : 1398947 161 : MetValIle : 163 ||||||:!! MetValVal 1398948 : ATGGTGGTA : 1398958 vulgar: gi|805819494|ref|XP_012149881.1| 49 163 . KQ414716.1 1398613 1398958 + 309 M 65 195 G 0 3 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1398614 1398958 309 + . gene_id 4 ; sequence gi|805819494|ref|XP_012149881.1| ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1398614 1398958 . + . KQ414716.1 exonerate:protein2genome:local exon 1398614 1398958 . + . insertions 3 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1398614 1398958 309 + . alignment_id 4 ; Query gi|805819494|ref|XP_012149881.1| ; Align 1398614 50 195 ; Align 1398812 115 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819494|ref|XP_012149881.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 271 -> 338 Target range: 1387619 -> 1387955 272 : SerLysLeuIleGlyAspThrAlaTyrGluSerAlaTrpTyrAspLeuArgProSe : 290 |||:!!! !||| !.!.:!:...|||... ||||||||||||!:!||| ! SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 291 : rGluAsnArgLeuLeuIleLeuLeuIleLeuArgSerGlnLysGlyPheThrPheT : 309 !||| !|||:::::::::|||:::||||||||||||||||||! !!!.! !.!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 310 : hrPheGlyLysPheSerSerProSerLeuGluSerPheThrSer >>>> Targe : 324 || ||||||||| !!:!! !||||||! :!!|||.!!!:: hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt.......... : 1387778 325 : t Intron 1 >>>> IleMetLysValSerAlaSerTyrIleSerValLeuLeu : 336 135 bp ::::!:|||!.!||||||||||||:!!|||||||||! ! ++MetLeuLysAlaSerAlaSerTyrValSerValLeuHis 1387779 : ...............agatgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTTGCAT : 1387947 337 : AlaMet : 338 |||||| AlaMet 1387948 : GCAATG : 1387955 vulgar: gi|805819494|ref|XP_012149881.1| 271 338 . KQ414716.1 1387619 1387955 + 152 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387955 152 + . gene_id 5 ; sequence gi|805819494|ref|XP_012149881.1| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387955 152 + . alignment_id 5 ; Query gi|805819494|ref|XP_012149881.1| ; Align 1387620 272 156 ; Align 1387911 324 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819494|ref|XP_012149881.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 113 -> 163 Target range: 1391872 -> 1392022 114 : SerThrArgArgLeuLeuLeuGlnMetAspLeuProPheAspThrSerGluSerPr : 132 !.!:!!|||..!||||||:!!:!!|||||||||||||||! !! !:!!!!!|| LysSerArgGluLeuLeuMetLysMetAspLeuProPheAlaTyrTyrLysThrPr 1391873 : AAGTCTCGAGAACTTTTGATGAAAATGGACCTCCCGTTTGCGTATTACAAAACACC : 1391927 133 : oThrTyrGluLeuValLeuSerAlaGlnPheLeuHisLeuValThrSerAlaLeuT : 151 |||||||:!!! !|||!!! !!.!|||||||||!!.|||:!!! !!:!|||! !. oThrTyrGlnTrpValPheValValGlnPheLeuGlnLeuLeuIleAsnAlaSerA 1391928 : GACGTATCAATGGGTATTTGTTGTACAATTTCTTCAGCTGTTGATAAATGCATCTG : 1391984 152 : hrPheGlyValPheSerAlaLeuLeuValMetValIle : 163 !!.!!|||:!!!!...!||||||:!!:!!! !:!!:!! laIleGlyMetLeuAspAlaLeuIleIleThrLeuVal 1391985 : CTATTGGTATGTTAGATGCTTTGATAATTACGTTGGTA : 1392022 vulgar: gi|805819494|ref|XP_012149881.1| 113 163 . KQ414716.1 1391872 1392022 + 107 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1391873 1392022 107 + . gene_id 6 ; sequence gi|805819494|ref|XP_012149881.1| ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1391873 1392022 . + . KQ414716.1 exonerate:protein2genome:local exon 1391873 1392022 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1391873 1392022 107 + . alignment_id 6 ; Query gi|805819494|ref|XP_012149881.1| ; Align 1391873 114 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819494|ref|XP_012149881.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 226 -> 271 Target range: 1394835 -> 1394970 227 : ValGlyTyrLeuIleValMetSerIleHisThrAlaAsnGlyProAlaLeuLeuIl : 245 :::... |||:::::: !:!!.!!:!!|||! ...... ...|| IleAsnIleLeuLeuLeu***AlaPheAsnThrAspGlyAsnIleLysThrPheIl 1394836 : attaatattttattgttgtaGGCATTTAATACAGatggaaatataaaaacatttat : 1394890 246 : eLysSerValLeuPheTyrIleAlaIleCysLeuGluAlaPheIleTyrCysPheA : 264 ||||:::::!|||||||||||||||||| !:!!||||||||||||!:!! !|||| eLysThrLeuLeuPheTyrIleAlaIleThrMetGluAlaPheIlePheSerPheA 1394891 : aaaaacattACTCTTTTACATCGCTATCACTATGGAAGCATTCATCTTCTCCTTTG : 1394947 265 : laGlyGluTyrLeuSerIleLys : 271 |||||||||||||||||! !||| laGlyGluTyrLeuSerAsnLys 1394948 : CCGGAGAATATCTCAGTAACAAA : 1394970 vulgar: gi|805819494|ref|XP_012149881.1| 226 271 . KQ414716.1 1394835 1394970 + 105 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394836 1394970 105 + . gene_id 7 ; sequence gi|805819494|ref|XP_012149881.1| ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1394836 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394836 1394970 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394836 1394970 105 + . alignment_id 7 ; Query gi|805819494|ref|XP_012149881.1| ; Align 1394836 227 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819496|ref|XP_003707222.2| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 577 Query range: 41 -> 217 Target range: 1401021 -> 1402805 42 : ValLeuHisValGlyCysGlnValAspIleMetCysArgThrIleThrGluAspAr : 60 |||||||||:!!|||||||||:!!|||||||||||||||!.!:!: !!!:! ! ValLeuHisLeuGlyCysGlnIleAspIleMetCysArgAsnLeuLeuAspValSe 1401022 : GTACTTCATCTAGGATGTCAAATCGACATCATGTGCCGAAATTTGCTAGACGTTTC : 1401076 61 : gValLysAsnLysGluGlnLeuLysPhePheIleAsnArgHisGlnAspIleIleL : 79 ! !!|||:!! :::|||:::||||||||||||||||||||||||!!:||||||: rPheLysAspGlyLysGlnIleLysPhePheIleAsnArgHisGlnGluIleIleV 1401077 : CTTCAAAGACggaaaacaaataaaattcttcattaACAGACATCAGGAAATTATTG : 1401133 80 : euLeuThrGluArgIleGluLysLeuPheThrTyrAlaAlaLeuSerGlnLeuLeu : 97 !!!!!.!!||||||||||||||||||||||||||| !|||||||||||||||:!! alPheAlaGluArgIleGluLysLeuPheThrTyrMetAlaLeuSerGlnLeuVal 1401134 : TTTTTGCAGAAAGAATTGAGAAACTTTTTACATACATGGCTCTCAGTCAACTTGTG : 1401187 98 : SerAsnThrLeuAsnThrCysCysLeuGlyPheLeuIleValIle >>>> Targ : 113 |||||||||:!!! !! !||||||:!!|||||||||:!!|||||| SerAsnThrIleIleIleCysCysValGlyPheLeuValValIle++ 1401188 : TCCAATACGATAATTATATGTTGCGTAGGATTTCTCGTTGTAATTgt......... : 1401237 114 : et Intron 1 >>>> AlaPheAsnIleAspAsnGlyLeuProIleLeuIleLy : 125 83 bp ||| ! :!!||||||||||||:!!|||:!:|||:!!|| ++AlaValHisIleAspAsnGlyValProLeuLeuLeuLy 1401238 : ................aggCAGTACATATCGACAATGGAGTTCCTCTGTTACTCAa : 1401354 126 : sSerIleLeuPheTyrValValValTrpLeuAspAlaTyrLeuTyrCysPheAlaG : 144 ||||:::|||||||||||||||:!!!! |||!!:|||!:!:!!|||||||||!.!| sSerLeuLeuPheTyrValValIleCysLeuGluAlaPheIleTyrCysPheValG 1401355 : atctcttttattttatgtgGTTATTTGTTTAGAAGCGTTTATATACTGCTTTGTCG : 1401411 145 : lyGluTyrLeuSerThrLys >>>> Target Intron 2 >>>> SerLysL : 153 ||||||||||||||! !||| 1004 bp |||:!!| lyGluTyrLeuSerIleLys++ ++SerGlnL 1401412 : GAGAATATCTCAGTATCAAGgt.........................agAGCCAAC : 1402442 154 : euIleCysGluThrAlaTyrLysCysLeuTrpTyrAspLeuHisProAsnGluSer : 171 ||||| !!.!.|||||||||:!!! !|||||||||||||||!.! !!!.!|||||| euIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSer 1402443 : TAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAGC : 1402496 172 : GlnLeuLeuValLeuProIleLeuArgSerGlnLysGlyLeuLysLeuThrPheGl : 190 |||||||||:!!! ! !|||||||||||||||||||||!!!! !!..|||||||| GlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGl 1402497 : CAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACGTttacttttgg : 1402553 191 : yLysPheSerSerLeuSerLeuGluSerPheMetSer >>>> Target Intro : 203 |||||||||||||||||||||||||||||||! !:!! 169 bp yLysPheSerSerLeuSerLeuGluSerPheThrAla++ 1402554 : aaaattttcaagtctCTCCTTGGAAAGCTTTACGGCCgt................. : 1402594 204 : n 3 >>>> MetMetLysAlaSerAlaSerTyrMetSerValLeuLeuAlaMet : 217 !!:||||||!.!||||||||||||!!:|||||||||||||||:!! ++IleMetLysValSerAlaSerTyrIleSerValLeuLeuAlaVal 1402595 : ........agATCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTG : 1402805 vulgar: gi|805819496|ref|XP_003707222.2| 41 217 . KQ414716.1 1401021 1402805 + 577 M 71 213 5 0 2 I 0 79 3 0 2 M 38 114 5 0 2 I 0 1000 3 0 2 M 52 156 5 0 2 I 0 165 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401022 1402805 577 + . gene_id 1 ; sequence gi|805819496|ref|XP_003707222.2| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401022 1401234 . + . KQ414716.1 exonerate:protein2genome:local exon 1401022 1401234 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401235 1401236 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401235 1401317 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1401316 1401317 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1401318 1401431 . + . KQ414716.1 exonerate:protein2genome:local exon 1401318 1401431 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401432 1401433 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401432 1402435 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1402434 1402435 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402436 1402591 . + . KQ414716.1 exonerate:protein2genome:local exon 1402436 1402591 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1402592 1402593 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1402592 1402760 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1402759 1402760 . + . intron_id 2 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402761 1402805 . + . KQ414716.1 exonerate:protein2genome:local exon 1402761 1402805 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401022 1402805 577 + . alignment_id 1 ; Query gi|805819496|ref|XP_003707222.2| ; Align 1401022 42 213 ; Align 1401318 113 114 ; Align 1402436 151 156 ; Align 1402761 203 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819496|ref|XP_003707222.2| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 356 Query range: 41 -> 150 Target range: 1408216 -> 1408635 42 : ValLeuHisValGlyCysGlnValAspIleMetCysArgThrIleThrGluAspAr : 60 |||||||||:!!|||||||||:!!||||||||||||!:!|||:!!! !|||! !! ValLeuHisLeuGlyCysGlnIleAspIleMetCysGlnThrLeuLysGluValPr 1408217 : GTGCTTCATCTAGGTTGTCAAATCGATATTATGTGCCAGACATTAAAGGAGGTTCC : 1408271 61 : gValLysAsnLysGluGlnLeuLysPhePheIleAsnArgHisGlnAspIleIleL : 79 ! !||||||||| ||||||!:!|||||||||!:!|||||||||.!.||||||: oTyrLysAsnLysThrGlnLeuArgPhePheIleSerArgHisGlnGlnIleIleI 1408272 : TTATAAGAATAAAACTCAACTGAGATTCTTCATCAGCAGACATCAACAGATCATCA : 1408328 80 : euLeuThrGluArgIleGluLysLeuPheThrTyrAlaAlaLeuSerGlnLeuLeu : 97 !!!!!.!!||||||||||||||||||||||||||| !|||||||||||||||||| lePheAlaGluArgIleGluLysLeuPheThrTyrLeuAlaLeuSerGlnLeuLeu 1408329 : TATTTGCAGAGAGAATAGAAAAACTGTTTACGTATCTAGCACTTAGTCAACTTCTC : 1408382 98 : SerAsnThrLeuAsnThrCysCysLeuGlyPheLeuIleValIle >>>> Targ : 113 ||||||||||||! !|||||||||:!!|||!:!:!!|||!.!.!! SerAsnThrLeuIleThrCysCysValGlyTyrIleIleAlaPhe++ 1408383 : TCGAATACCCTAATTACTTGCTGCGTGGGTTATATTATCGCATTTgt......... : 1408432 114 : et Intron 1 >>>> AlaPheAsnIleAspAsnGlyLeuProIleLeuIleLy : 125 92 bp |||.!..!.! !:!!||||||!!! !!!:|||||||| ++AlaLeuGlnAsnAsnAsnGlyPheLysMetLeuIleLy 1408433 : ................agGCACTACAAAATAATAATGGATTTAAAATGTTGATCAA : 1408558 126 : sSerIleLeuPheTyrValValValTrpLeuAspAlaTyrLeuTyrCysPheAlaG : 144 |! !:!!:!!!:!|||:!!!.!|||!! ! !!!:|||!:!:!!||||||||||||| sPheValValTyrTyrMetAlaValCysSerGluAlaPheIleTyrCysPheAlaG 1408559 : ATTTGTTGTATATTACATGGCTGTGTGCTCAGAAGCGTTCATATACTGCTTTGCTG : 1408615 145 : lyGluTyrLeuSerThrLys : 150 |||||||||||!:!! !||| lyGluTyrLeuAsnIleLys 1408616 : GAGAGTACCTTAATATCAAG : 1408635 vulgar: gi|805819496|ref|XP_003707222.2| 41 150 . KQ414716.1 1408216 1408635 + 356 M 71 213 5 0 2 I 0 88 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408217 1408635 356 + . gene_id 2 ; sequence gi|805819496|ref|XP_003707222.2| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408217 1408429 . + . KQ414716.1 exonerate:protein2genome:local exon 1408217 1408429 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408430 1408431 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408430 1408521 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1408520 1408521 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1408522 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408522 1408635 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408217 1408635 356 + . alignment_id 2 ; Query gi|805819496|ref|XP_003707222.2| ; Align 1408217 42 213 ; Align 1408522 113 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819496|ref|XP_003707222.2| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 353 Query range: 62 -> 217 Target range: 1394242 -> 1395911 63 : AsnLysGluGlnLeuLysPhePheIleAsnArgHisGlnAspIleIleLeuLeuTh : 81 :::!:!.!. !|||! !!.|||:!!||||||!!. ||||||:!! !:! SerArgAsnThrThrLysSerLeuIleHisArgHisHisArgIleIleIleAsnSe 1394243 : TCGAGAAACACCACCAAATCATTAATTCACAGACATCATCGAATCATTATTAATTC : 1394297 82 : rGluArgIleGluLysLeuPheThrTyrAlaAlaLeuSerGlnLeuLeuSerAsnT : 100 !!!: !||||||!..||||||:!!||| !||||||! !|||! !|||!!!|||| rAspSerIleGluSerLeuPheSerTyrIleAlaLeuMetGlnTrpLeuCysAsnT 1394298 : GGACTCTATCGAGAGTCTTTTTTCATACATTGCTTTGATGCAGTGGTTATGTAACA : 1394354 101 : hrLeuAsnThrCysCysLeuGlyPheLeuIleValIle >>>> Target Intr : 113 ||||| !! !||||||:!!|||||||||||||||||| 464 bp hrLeuValIleCysCysIleGlyPheLeuIleValIle++ 1394355 : CGCTCGTTATATGTTGCATAGGATTCTTAATAGTAATTgt................ : 1394395 114 : on 1 >>>> AlaPheAsnIleAspAsnGlyLeuProIleLeuIleLysSerIle : 127 |||||||||! !|||......::: ...||||||:::::! ++AlaPheAsnThrAspGlyAsnIleLysThrPheIleLysThrLeu 1394396 : .........agGCATTTAATACAGatggaaatataaaaacatttataaaaacattA : 1394899 128 : LeuPheTyrValValValTrpLeuAspAlaTyrLeuTyrCysPheAlaGlyGluTy : 146 |||||||||:!!!.!:!! :!!!!:|||!:!:!!!:!! !|||||||||||||| LeuPheTyrIleAlaIleThrMetGluAlaPheIlePheSerPheAlaGlyGluTy 1394900 : CTCTTTTACATCGCTATCACTATGGAAGCATTCATCTTCTCCTTTGCCGGAGAATA : 1394956 147 : rLeuSerThrLys >>>> Target Intron 2 >>>> SerLysLeuIleCy : 155 |||||||!.!||| 353 bp ||| !! !||| ! rLeuSerAsnLys++ ++SerLeuSerIleSe 1394957 : TCTCAGTAACAAAgt.........................agAGTCTATCAATTAG : 1395336 156 : sGluThrAlaTyrLysCysLeuTrpTyrAspLeuHisProAsnGluSerGlnLeuL : 174 !.!..!!||||||!..! ! !|||||| !||| !!|||.!.!!:!!!!!.:!!: rAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGlnAspArgHisIleI 1395337 : CAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCAAGACAGACATATCA : 1395393 175 : euValLeuProIleLeuArgSerGlnLysGlyLeuLysLeuThrPheGlyLysPhe : 192 !!:!!|||! !!!::!!|||||||||!:! !!|||! !:!!||| !||||||||| leIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleThrAlaGlyLysPhe 1395394 : TTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCACCGCTGGAAAATTT : 1395447 193 : SerSerLeuSerLeuGluSerPheMetSer >>>> Target Intron 3 >>> : 203 ! !..!||||||||||||.!!||| !:! 387 bp MetAspLeuSerLeuGluGlyPheAlaAsn++ 1395448 : ATGGACTTGTCTTTAGAAGGTTTTGCAAATgt........................ : 1395482 204 : > MetMetLysAlaSerAlaSerTyrMetSerValLeuLeuAlaMet : 217 ::::!:||||||||||||||||||!!:|||||||||! !|||||| ++IleLeuLysAlaSerAlaSerTyrIleSerValLeuTyrAlaMet 1395483 : .agatcTTAAAGGCTTCTGCATCGTACATATCTGTACTGTATGCGATG : 1395911 vulgar: gi|805819496|ref|XP_003707222.2| 62 217 . KQ414716.1 1394242 1395911 + 353 M 50 150 5 0 2 I 0 460 3 0 2 M 38 114 5 0 2 I 0 349 3 0 2 M 52 156 5 0 2 I 0 383 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394243 1395911 353 + . gene_id 3 ; sequence gi|805819496|ref|XP_003707222.2| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394243 1394392 . + . KQ414716.1 exonerate:protein2genome:local exon 1394243 1394392 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394393 1394394 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394393 1394856 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394855 1394856 . + . intron_id 0 ; splice_site "aG" KQ414716.1 exonerate:protein2genome:local cds 1394857 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394857 1394970 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394971 1394972 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394971 1395323 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1395322 1395323 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1395324 1395479 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395479 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1395480 1395481 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1395480 1395866 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1395865 1395866 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1395867 1395911 . + . KQ414716.1 exonerate:protein2genome:local exon 1395867 1395911 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394243 1395911 353 + . alignment_id 3 ; Query gi|805819496|ref|XP_003707222.2| ; Align 1394243 63 150 ; Align 1394857 113 114 ; Align 1395324 151 156 ; Align 1395867 203 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819496|ref|XP_003707222.2| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 173 Query range: 146 -> 200 Target range: 1409037 -> 1409199 147 : LeuSerThrLysSerLysLeuIleCysGluThrAlaTyrLysCysLeuTrpTyrAs : 165 :!!..! !:::|||||||||||| :!:|||||||||:!!! !|||||||||:! IleAspPheGlnSerLysLeuIleGlyAspThrAlaTyrGluPheLeuTrpTyrAs 1409038 : ATTGATTTTcagagtaaactgattggagACACGGCGTATGAATTTCTTTGGTATAA : 1409092 166 : pLeuHisProAsnGluSerGlnLeuLeuValLeuProIleLeuArgSerGlnLysG : 184 !:!!||| !!!!.||||||!:!|||:!!:!!||| !||||||||||||||||||| nMetHisSerLysGluSerArgLeuMetLeuLeuValIleLeuArgSerGlnLysG 1409093 : TATGCATTCGAAGGAAAGCCGACTTATGTTGCTTGTAATACTACGATCACAGAAAG : 1409149 185 : lyLeuLysLeuThrPheGlyLysPheSerSerLeuSerLeuGluSerPhe : 200 ||!!!! ...|||||||||||||||:::|||||||||:!!||||||||| lyPheThrPheThrPheGlyLysPheAlaSerLeuSerMetGluSerPhe 1409150 : GATTTACtttcacttttggaaaatttgcaagtCTTTCCATGGAAAGTTTT : 1409199 vulgar: gi|805819496|ref|XP_003707222.2| 146 200 . KQ414716.1 1409037 1409199 + 173 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1409038 1409199 173 + . gene_id 4 ; sequence gi|805819496|ref|XP_003707222.2| ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1409038 1409199 . + . KQ414716.1 exonerate:protein2genome:local exon 1409038 1409199 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1409038 1409199 173 + . alignment_id 4 ; Query gi|805819496|ref|XP_003707222.2| ; Align 1409038 147 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819496|ref|XP_003707222.2| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 169 Query range: 150 -> 217 Target range: 1387619 -> 1387955 151 : SerLysLeuIleCysGluThrAlaTyrLysCysLeuTrpTyrAspLeuHisProAs : 169 |||:!!! !||| :!!:!:...|||... ||||||||||||||| ! |||.. SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 170 : nGluSerGlnLeuLeuValLeuProIleLeuArgSerGlnLysGlyLeuLysLeuT : 188 .|||:!!!:::::::::::||| ||||||||||||||||||! !|||! !|||| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 189 : hrPheGlyLysPheSerSerLeuSerLeuGluSerPheMetSer >>>> Targe : 203 || ||||||||| !!:!|||||||||! :!!||| !:: hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt.......... : 1387778 204 : t Intron 1 >>>> MetMetLysAlaSerAlaSerTyrMetSerValLeuLeu : 215 135 bp |||:!:||||||||||||||||||:!:|||||||||! ! ++MetLeuLysAlaSerAlaSerTyrValSerValLeuHis 1387779 : ...............agatgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTTGCAT : 1387947 216 : AlaMet : 217 |||||| AlaMet 1387948 : GCAATG : 1387955 vulgar: gi|805819496|ref|XP_003707222.2| 150 217 . KQ414716.1 1387619 1387955 + 169 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387955 169 + . gene_id 5 ; sequence gi|805819496|ref|XP_003707222.2| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387955 169 + . alignment_id 5 ; Query gi|805819496|ref|XP_003707222.2| ; Align 1387620 151 156 ; Align 1387911 203 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819496|ref|XP_003707222.2| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 0 -> 42 Target range: 1405974 -> 1406100 1 : MetAspLeuProValAlaThrLysGluThrProValTyrGluLeuValLeuThrAl : 19 |||||||||||| !! !|||!!..!.:!!|||:!!||||||||||||:!!..! MetAspLeuProPheAsnThrAsnAsnSerProIleTyrGluLeuValIleValLe 1405975 : ATGGACTTGCCATTTAATACGAACAATTCGCCTATTTACGAGCTGGTAATAGTTTT : 1406029 20 : aGlnPheLeuHisGlnThrSerThrAlaPheSerPheGlyThrPheSerAlaLeuL : 38 !|||!:!||| !:!!..!||||||||||||!!!||||||..!||||||::!|||| uGlnTyrLeuCysLysValSerThrAlaPheThrPheGlyValPheSerSerLeuL 1406030 : ACAATACCTATGCAAAGTATCGACAGCTTTTACGTTTGGTGTATTCAGCAGTCTGC : 1406086 39 : euLeuMetValVal : 42 ||||||||:!!||| euLeuMetMetVal 1406087 : TTTTGATGATGGTA : 1406100 vulgar: gi|805819496|ref|XP_003707222.2| 0 42 . KQ414716.1 1405974 1406100 + 131 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1405975 1406100 131 + . gene_id 6 ; sequence gi|805819496|ref|XP_003707222.2| ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1405975 1406100 . + . KQ414716.1 exonerate:protein2genome:local exon 1405975 1406100 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1405975 1406100 131 + . alignment_id 6 ; Query gi|805819496|ref|XP_003707222.2| ; Align 1405975 1 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819496|ref|XP_003707222.2| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 0 -> 42 Target range: 1398832 -> 1398958 1 : MetAspLeuProValAlaThrLysGluThrProValTyrGluLeuValLeuThrAl : 19 |||||||||||| !!! !|||!..|||:!!||| !||||||||||||:!!|||.! MetAspLeuProPheGluThrSerGluSerProAsnTyrGluLeuValValThrTh 1398833 : ATGGATTTGCCTTTCGAGACCAGCGAATCGCCGAATTACGAACTTGTAGTAACTAC : 1398887 20 : aGlnPheLeuHisGlnThrSerThrAlaPheSerPheGlyThrPheSerAlaLeuL : 38 !||| !!||| !!!. !|||..!||| ! :!!!:!|||.!!|||!:!||||||| rGlnValLeuIleHisLeuSerValAlaValAlaTyrGlyAlaPheAsnAlaLeuL 1398888 : ACAGGTCCTTATTCACTTATCAGTGGCCGTAGCATACGGTGCATTCAATGCTCTTC : 1398944 39 : euLeuMetValVal : 42 |||||||||||||| euLeuMetValVal 1398945 : TCTTAATGGTGGTA : 1398958 vulgar: gi|805819496|ref|XP_003707222.2| 0 42 . KQ414716.1 1398832 1398958 + 118 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1398833 1398958 118 + . gene_id 7 ; sequence gi|805819496|ref|XP_003707222.2| ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1398833 1398958 . + . KQ414716.1 exonerate:protein2genome:local exon 1398833 1398958 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1398833 1398958 118 + . alignment_id 7 ; Query gi|805819496|ref|XP_003707222.2| ; Align 1398833 1 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 109 -> 216 Target range: 887456 -> 887774 110 : LeuGluIleLeuAspIleTyrSerLysLysAlaThrPheLeuSerCysLeuTyrGlnV : 129 |||...||||||::!||| !!! !:!!! !! !|||||| ! !!!!! ! !| LeuAsnIleLeuAsnIleAsnPheGlnIleIleLysPheLeuLeuHisPheSerIleV 887457 : ttaaacattttgaaCATTAACTTTCAAATTATCAAGTTTCTTCTTCACTTCTCTATAG : 887514 130 : alSerIleSerPheCysAlaPheMetPheValLeuLeuProThrIleProProIleLe : 148 ||! !:!!!!!.!.! ||| |||!:! !! !||| :!!||| !! !:!!:! alTyrValCysIleSerAlaThrMetTyrPheThrLeu---SerIleAlaValValIl 887515 : TTTACGTCTGCATATCGGCGACAATGTATTTCACACTT---TCGATTGCCGTGGTCAT : 887568 149 : uAsnValValAlaProLeuAsnGluSerArgSerArgGluPheIleTyrProSerTyr : 167 ! !! !! ! ! ! !|||..!!!!..! !!|||:!! !:!!|||||| ! ! ePheGluGluLeuAsnLysAsnArgThrGluProArgGlnThrLeuTyrProValGlu 887569 : CTTCGAGGAATTGAATAAAAACCGGACCGAACCCAGACAGACTCTATACCCAGTGGAG : 887625 168 : TyrPheValAspGluGlnGlnTyrTyrTyrProIleLeuValHisMetIleSerValA : 187 ||| !:!!|||...::::::|||:::||| ||| !!.!||| !:!! !. TyrHisIleAspSerGluLysTyrPheTyrLeuIleThrAlaHisCysTyrAlaSerT 887626 : TACCACATCgacagtgaaaaatatttttacctgATTACAGCTCATTGTTACGCCTCGA : 887685 188 : laValIleLeuThrSerValTyrIleAlaCysAspIleAsnLeuValHisValValHi : 206 !!|||:!!||| ! ! ! !:!!!.! !|||! !! ! !:!! !:!!|||!! hrValLeuLeuLeuLeuGlnThrValValHisAspThrMetTyrIleValLeuValGl 887686 : CAGTACTTCTTCTGCTTCAAACTGTCGTACACGACACAATGTACATTGTTCTGGTCCA : 887742 207 : sHisGlyCysAlaLeuLeuAlaIleSerGly : 216 .|||||||||||||||!!!|||:!!!!!||| nHisGlyCysAlaLeuPheAlaValThrGly 887743 : ACATGGCTGCGCTTTATTCGCAGTTACGGGG : 887774 vulgar: gi|350396218|ref|XP_003484482.1| 109 216 . KQ414735.1 887456 887774 + 119 M 32 96 G 1 0 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 887457 887774 119 + . gene_id 1 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 887457 887774 . + . KQ414735.1 exonerate:protein2genome:local exon 887457 887774 . + . insertions 0 ; deletions 1 KQ414735.1 exonerate:protein2genome:local similarity 887457 887774 119 + . alignment_id 1 ; Query gi|350396218|ref|XP_003484482.1| ; Align 887457 110 96 ; Align 887553 143 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 297 Query range: 117 -> 377 Target range: 18099 -> 16644 118 : LysLysAlaThrPheLeuSerCysLeuTyrGlnValSerIleSerPheCysAlaPheMet : 137 |||::: !.!! !|||..! ! :!!!:!! !|||!:! ! !.!!|||:!!|||:!! LysGlnLeuAlaThrLeuAspArgIlePheProValAsnAlaTyrIleCysSerPheLeu 18099 : aaacaattAGCAACTCTCGATCGGATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTG : 18042 138 : PheValLeuLeuProThrIleProProIleLeuAsnValValAlaProLeuAsnGluSer : 157 |||:!!! !:!!||| ! !!! !:!::!!||| ! ! ! !!! !||| !!!! PheIleGlnValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIleThr 18041 : TTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACG : 17982 158 : ArgSerArgGluPheIleTyrProSerTyrTyrPheValAspGluGlnGlnTyrTyrTyr : 177 ! !||| !:!!|||:!! |||.!!|||||||||||||||||| !:!!||||||||| ProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyrTyr 17981 : CCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTAT : 17922 178 : ProIleLeuValHisMetIleSerValAlaValIleLeuThrSerValTyrIleAlaCys : 197 !|||:!!:!!||| ! !!!..! !:!!|||:!!..! !|||||| !|||||| TyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCys 17921 : TACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 17862 198 : AspIleAsnLeuValHisValValHisHisGlyCysAlaLeuLeuAlaIleSerGlyTyr : 217 |||! !!:!! !:!! :!!|||!!.||| !|||!.!|||!!!|||:!::!!|||! AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly*** 17861 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGGTGA : 17802 218 : ArgPheLysHisAlaMetAspAsnValSerPheSerAsnGluLysTyrLeuAspValLeu : 237 ..! ! !... :::|||||||||:::! !!!.|||! ! ! !! ! GluAsnLeuArgAspThrPhePheLeuSerPheSerSerGlyAsnTyrTyr***AspCys 17801 : GAAAACTTGAGagatacattttttctctcattttcgtCGGGAAACTATTATTGAGATTGC : 17742 238 : LeuAspGluThrHisAlaLysIleSerArgSerIleAspAlaHisLysLysAlaVal{Gl : 257 :!!!!:...:!!!!. ! !:!!..!..!! !! !... ! :!! !! !! !{! ValGluArgSerGlnIleProLeuGlnGluPheAsnSerArgGlyGln***ArgGlu{Gl 17741 : GTGGAACGTTCGCAGATACCGCTTCAAGAATTCAATTCGCGAGGACAATAGCGTGAA{GG : 17682 258 : } >>>> Target Intron 1 >>>> {u}TyrValAspLysValAspAlaCysHis : 266 } 192 bp { }!:!||| ! :!!:!!!!: ! !!||| }+- ++{y}PheValLysGluIleGluArgGlyHis 17681 : }gg.........................ag{C}TTTGTAAAGGAAATTGAACGCGGCCAT : 17463 267 : ValHisTyrPhePheIleIleLeuGlyLeuIleIleValThrPheThrSerThrPheVal : 286 ! ! |||.!!|||! ! !|||||||||:!:|||:!! !|||!:!! !|||.!.:!! AspThrTyrLeuPheThrCysLeuGlyLeuValIleLeuCysPheSerIleThrLeuIle 17462 : GACACGTACCTTTTCACCTGCTTAGGCTTGGTGATTCTATGCTTCAGTATTACTCTGATC : 17403 287 : Arg >>>> Target Intron 2 >>>> LeuSerThrMetGluIleGlyValArgT : 297 !:! 483 bp ||||||||| ... Lys++ --LeuSerThrLys***ArgLeuPheAsnV 17402 : AAGgt.........................cattatccaccaagtgacgattgtttaacg : 16887 298 : yrPheThrPheCysAlaPheThrLeuSerGlnMetThrHisLeuLeuPheLeuThrIleM : 317 ::: ... ... |||:!!! ! !||| !..! ! alAlaSerGlnSerProLeuAspCysLysGly***ThrTyrHisAsnPheAlaValAspS 16886 : tcgcttctcagtcgccactcgattgcaaagggtgaACCTACCACAATTTTGCTGTTGATT : 16827 318 : etGlyGlnPheLeuIleAsnSerAsnAspGluThrPheGlnAlaIleCysGluAlaLysT : 337 !..! !! ! !! !!!!..!|||!!:!.! :!!! !! !|||:!! !| erAsnGlyThrProCysIleThrArgAspAspAsnGluThrSerArgTyrGluSerLeuT 16826 : CGAACGGCACTCCGTGTATCACACGCGATGATAATGAAACTTCCAGATACGAATCATTAT : 16767 338 : rpTyrAsnGlySerSerLysThrGlnSerLeuTyrLeuLeuValLeuArgLysCysLeuS : 357 |||||!...!!|||||||||||||||:!!||||||:!!:!!!.!||||||!:! !|||! rpTyrThrSerSerSerLysThrGlnAlaLeuTyrValValAlaLeuArgArgAsnLeuT 16766 : GGTACACAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCGTTACGAAGAAACCTAA : 16707 358 : erProProLysLeuThrGlyGlyGlyValIleSerLeuAsnLeuGluSerPheValGlnV : 377 !!||| !! ||||||!.!||||||:!!:!:..!||||||:!!:!!||||||!.!:!!| hrProThrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMetGlnSerPheAlaGluV 16706 : CACCTACCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATGCAAAGCTTCGCAGAGG : 16647 378 : al : 377 || al 16646 : TA : 16645 vulgar: gi|350396218|ref|XP_003484482.1| 117 377 . KQ414772.1 18099 16644 - 297 M 139 417 S 0 2 5 0 2 I 0 188 3 0 2 S 1 1 M 30 90 5 0 2 I 0 479 3 0 2 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 16645 18099 297 - . gene_id 1 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 17681 18099 . - . KQ414772.1 exonerate:protein2genome:local exon 17681 18099 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 17679 17680 . - . intron_id 1 ; splice_site "GG" KQ414772.1 exonerate:protein2genome:local intron 17489 17680 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 17489 17490 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 17398 17488 . - . KQ414772.1 exonerate:protein2genome:local exon 17398 17488 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 17396 17397 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 16915 17397 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 16915 16916 . - . intron_id 1 ; splice_site "ca" KQ414772.1 exonerate:protein2genome:local cds 16645 16914 . - . KQ414772.1 exonerate:protein2genome:local exon 16645 16914 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 16645 18099 297 - . alignment_id 1 ; Query gi|350396218|ref|XP_003484482.1| ; Align 18100 118 417 ; Align 17488 258 90 ; Align 16915 288 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 288 Query range: 68 -> 216 Target range: 38401 -> 37769 69 : TyrLeuAspIleGlyPheValIleLeuIleLysGlnTyrAsnTyrValLeuAsnGluLys : 88 |||! !! !||| !!!:!:!! !! !|||::! ! !!|||!! :!! !...:!! ! TyrSerAlaIleArgTyrLeuArgHisIleArg***AsnAsn***LeuArgArgLysLeu 38401 : TACTCTGCTATCCGTTATCTCCGACACATACGGTGAAATAACTAATTGAGACGAAAATTA : 38344 89 : LysLeuLysGlyLeuLeuAsnAspIleValAlaAspArgLeuIleGluArgProLysGlu : 108 :!!|||!:!..!||||||... !||| !!! !||| !!||||||:!!||||||||| GlnLeuArgSerLeuLeuGlyCysIlePheAspAspTrpLeuIleLysArgProLysThr 38343 : CAGCTAAGATCGCTTTTGGGGTGCATATTCGATGATTGGTTAATAAAGCGGCCGAAAACC : 38284 109 : GluLeuGluIleLeuAspIleTyrSerLysLysAlaThrPheLeuSerCysLeuTyrGln : 128 |||:!!!!:|||:!!|||! |||:!!|||!:!!.! !|||!!!||| !!|||||| GluMetAspIleMetAspLysTyrAlaLysArgGlyArgPhePheSerArgLeuTyrVal 38283 : GAAATGGACATTATGGACAAGTACGCTAAAAGAGGCCGGTTTTTCAGTCGTTTGTACGTT : 38224 129 : {V} >>>> Target Intron 1 >>>> {al}SerIleSerPheCysAlaPheMet : 137 {|} 188 bp {||}!:! ! !|||||| ! !!!!: {V}++ ++{al}AsnGlyLeuPheCysTyrValIle 38223 : {G}gt.........................ag{TA}AACGGACTGTTTTGCTACGTTATA : 38009 138 : PheValLeuLeuProThrIleProProIleLeuAsnValValAlaProLeuAsnGluSer : 157 |||..!! !:!! !!! !! |||! !:!!|||:!!:!!:!!:!!||| !||||||||| PheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSer 38008 : TTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCG : 37949 158 : ArgSerArgGluPheIleTyrProSerTyrTyrPheValAspGluGlnGlnTyrTyrTyr : 177 |||.!! !!!:||||||||||||:!!|||||| !:!!||||||:!!:!!:!!|||||| ArgGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyr 37948 : CGTGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAGGAACATTATTAC : 37889 178 : ProIleLeuValHisMetIleSerValAlaValIleLeuThrSerValTyrIleAlaCys : 197 !:!::!!! !||||||:!!!!!||| !..!:!!:!! !! !|||||||||:!!||| IleLeuMetGlyHisMetLeuCysValIleThrValValPhePheValTyrIleSerCys 37888 : ATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTGTACATCTCCTGT : 37829 198 : AspIleAsnLeuValHisValValHisHisGlyCysAlaLeuLeuAlaIleSerGly : 216 |||! ! !! !:!! !:!!|||!!.|||!.!|||!.!|||||| !:!!|||||| AspThrIleTyrMetSerIleValGlnHisAlaCysGlyLeuLeuAsnValSerGly 37828 : GACACGATCTACATGAGCATCGTTCAACACGCGTGCGGATTACTGAACGTCTCTGGG : 37770 vulgar: gi|350396218|ref|XP_003484482.1| 68 216 . KQ414772.1 38401 37769 - 288 M 60 180 S 0 1 5 0 2 I 0 184 3 0 2 S 1 2 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37770 38401 288 - . gene_id 2 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 38221 38401 . - . KQ414772.1 exonerate:protein2genome:local exon 38221 38401 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 38219 38220 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 38033 38220 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 38033 38034 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 37770 38032 . - . KQ414772.1 exonerate:protein2genome:local exon 37770 38032 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 37770 38401 288 - . alignment_id 2 ; Query gi|350396218|ref|XP_003484482.1| ; Align 38402 69 180 ; Align 38031 130 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 248 Query range: 288 -> 377 Target range: 37308 -> 36908 289 : SerThrMetGluIleGlyValArgTyrPheThrPheCysAlaPheThrLeuSerGlnMet : 308 |||! !|||!!: ! !!:!!..!!:!!:!! !!:!||||||||| !:!! !|||:!! SerMetMetAspProCysMetGluPheTyrLysTyrCysAlaPheLeuValValGlnLeu 37308 : TCCATGATGGACCCTTGCATGGAGTTCTACAAGTATTGCGCTTTCTTGGTGGTGCAACTG : 37251 309 : ThrHisLeuLeuPheLeuThrIleMetGlyGlnPheLeuIleAsnSerAsnAspGluThr : 328 ..!|||||||||||||||:!!|||..!|||!!.|||:!!||| !|||:!!||| !||| ValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleLeuSerHisAspMetThr 37250 : GTTCATTTGCTTTTCCTTTCTATCCAGGGACACTTTGTTATACTCTCGCATGACATGACT : 37191 329 : PheGlnAla{Il} >>>> Target Intron 1 >>>> {e}CysGluAlaLysTrp : 337 !:!.!. !{||} 133 bp {|}! !...||||||||| TyrAspAsn{Il}++ ++{e}TyrSerAlaLysTrp 37190 : TACGACAAC{AT}gt.........................ag{A}TATAGCGCAAAATGG : 37031 338 : TyrAsnGlySerSerLysThrGlnSerLeuTyrLeuLeuValLeuArgLysCysLeuSer : 357 ||||||.!!||| !!!:!||||||!!!||||||:!!|||!.!||||||!:! !!|||!!! TyrAsnSerSerProArgThrGlnThrLeuTyrValLeuAlaLeuArgArgSerLeuThr 37030 : TACAACAGTTCGCCGAGAACGCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACT : 36971 358 : ProProLysLeuThrGlyGlyGlyValIleSerLeuAsnLeuGluSerPheValGlnVal : 377 |||||| !||||||!.!||||||:!!||||||||||||||||||!!!|||!.!:::||| ProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGluVal 36970 : CCGCCATTGCTCACTGCGGGAGGACTGATTTCCTTGAATTTGGAGACTTTTGCCGaggta : 36911 vulgar: gi|350396218|ref|XP_003484482.1| 288 377 . KQ414772.1 37308 36908 - 248 M 43 129 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 36909 37308 248 - . gene_id 3 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 37178 37308 . - . KQ414772.1 exonerate:protein2genome:local exon 37178 37308 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 37176 37177 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 37045 37177 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 37045 37046 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 36909 37044 . - . KQ414772.1 exonerate:protein2genome:local exon 36909 37044 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 36909 37308 248 - . alignment_id 3 ; Query gi|350396218|ref|XP_003484482.1| ; Align 37309 289 129 ; Align 37044 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 248 Query range: 288 -> 377 Target range: 35874 -> 35474 289 : SerThrMetGluIleGlyValArgTyrPheThrPheCysAlaPheThrLeuSerGlnMet : 308 |||! !|||!!: ! !!:!!..!!:!!:!! !!:!||||||||| !:!! !|||:!! SerMetMetAspProCysMetGluPheTyrLysTyrCysAlaPheLeuValValGlnLeu 35874 : TCCATGATGGACCCTTGCATGGAGTTCTACAAGTATTGCGCTTTCTTGGTGGTGCAACTG : 35817 309 : ThrHisLeuLeuPheLeuThrIleMetGlyGlnPheLeuIleAsnSerAsnAspGluThr : 328 ..!|||||||||||||||:!!|||..!|||!!.|||:!!||| !|||:!!||| !||| ValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleLeuSerHisAspMetThr 35816 : GTTCATTTGCTTTTCCTTTCTATCCAGGGACACTTTGTTATACTCTCGCATGACATGACT : 35757 329 : PheGlnAla{Il} >>>> Target Intron 1 >>>> {e}CysGluAlaLysTrp : 337 !:!.!. !{||} 133 bp {|}! !...||||||||| TyrAspAsn{Il}++ ++{e}TyrSerAlaLysTrp 35756 : TACGACAAC{AT}gt.........................ag{A}TATAGCGCAAAATGG : 35597 338 : TyrAsnGlySerSerLysThrGlnSerLeuTyrLeuLeuValLeuArgLysCysLeuSer : 357 ||||||.!!||| !!!:!||||||!!!||||||:!!|||!.!||||||!:! !!|||!!! TyrAsnSerSerProArgThrGlnThrLeuTyrValLeuAlaLeuArgArgSerLeuThr 35596 : TACAACAGTTCGCCGAGAACGCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACT : 35537 358 : ProProLysLeuThrGlyGlyGlyValIleSerLeuAsnLeuGluSerPheValGlnVal : 377 |||||| !||||||!.!||||||:!!||||||||||||||||||!!!|||!.!:!!||| ProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGluVal 35536 : CCGCCATTGCTCACTGCGGGAGGACTGATTTCCTTGAATTTGGAGACTTTTGCCGAGGTA : 35477 vulgar: gi|350396218|ref|XP_003484482.1| 288 377 . KQ414772.1 35874 35474 - 248 M 43 129 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 35475 35874 248 - . gene_id 4 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 35744 35874 . - . KQ414772.1 exonerate:protein2genome:local exon 35744 35874 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 35742 35743 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 35611 35743 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 35611 35612 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 35475 35610 . - . KQ414772.1 exonerate:protein2genome:local exon 35475 35610 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 35475 35874 248 - . alignment_id 4 ; Query gi|350396218|ref|XP_003484482.1| ; Align 35875 289 129 ; Align 35610 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 248 Query range: 287 -> 377 Target range: 28321 -> 27981 288 : LeuSerThrMetGluIleGlyValArgTyrPheThrPheCysAlaPheThrLeuSerGln : 307 :!!|||! !|||.!. ! !!|||..!!:!!:!! !!:!|||!.!||| !:!! !||| ValSerMetMetAsnProCysValGluPheTyrLysTyrCysGlyPheLeuValValGln 28321 : GTGTCCATGATGAACCCTTGCGTGGAGTTCTACAAGTATTGCGGTTTCTTGGTGGTGCAA : 28264 308 : MetThrHisLeuLeuPheLeuThrIleMetGlyGlnPheLeuIleAsnSerAsnAspGlu : 327 :!!..!|||||||||||||||:!!|||..!|||!!.|||:!!||| !|||:!!||| ! LeuValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleValSerHisAspMet 28263 : CTGGTTCATTTGCTTTTCCTTTCTATCCAGGGACACTTCGTTATAGTCTCGCATGACATG : 28204 328 : ThrPheGlnAla{Il} >>>> Target Intron 1 >>>> {e}CysGluAlaLys : 336 |||!:!.!. !{||} 70 bp {|}|||! |||! ! ThrTyrAspAsn{Il}++ ++{e}CysAlaAlaThr 28203 : ACTTACGATAAT{AT}gt.........................ag{A}TGCGCTGCAACA : 28107 337 : TrpTyrAsnGlySerSerLysThrGlnSerLeuTyrLeuLeuValLeuArgLysCysLeu : 356 |||||||||.!!!!!|||!:!||||||:!!||||||:!!|||!.!||||||!:! !||| TrpTyrAsnSerThrSerArgThrGlnAlaLeuTyrMetLeuAlaLeuArgArgAsnLeu 28106 : TGGTACAACAGTACATCTAGAACGCAAGCTTTGTACATGCTAGCTTTGAGAAGGAACTTG : 28047 357 : SerProProLysLeuThrGlyGlyGlyValIleSerLeuAsnLeuGluSerPheValGln : 376 !!!|||||| !:!!|||!.!||||||:!!||||||||||||||||||!!!|||!.!:!! ThrProProLeuIleThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGlu 28046 : ACACCACCACTGATCACCGCCGGAGGACTGATTTCCTTGAATTTGGAGACCTTCGCGGAG : 27987 377 : Val : 377 ||| Val 27986 : GTA : 27982 vulgar: gi|350396218|ref|XP_003484482.1| 287 377 . KQ414772.1 28321 27981 - 248 M 44 132 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 27982 28321 248 - . gene_id 5 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 28188 28321 . - . KQ414772.1 exonerate:protein2genome:local exon 28188 28321 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 28186 28187 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 28118 28187 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 28118 28119 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 27982 28117 . - . KQ414772.1 exonerate:protein2genome:local exon 27982 28117 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 27982 28321 248 - . alignment_id 5 ; Query gi|350396218|ref|XP_003484482.1| ; Align 28322 288 132 ; Align 28117 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 237 Query range: 128 -> 216 Target range: 14157 -> 13893 129 : ValSerIleSerPheCysAlaPheMetPheValLeuLeuProThrIleProProIleLeu : 148 |||!:! ! ! !!|||!.!.!!:!!|||||| ! !|||..!! !|||! !|||||| ValAsnAlaIleValCysValIleLeuPheValThrThrProValThrProHisIleLeu 14157 : GTGAACGCGATCGTTTGTGTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATTTTG : 14100 149 : AsnValValAlaProLeuAsnGluSerArgSerArgGluPheIleTyrProSerTyrTyr : 168 :!!:!!:!! !||| !||||||||||||..! !! !!:!|||||||||:!!|||||| AspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyr 14099 : GACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTAT : 14040 169 : PheValAspGluGlnGlnTyrTyrTyrProIleLeuValHisMetIleSerValAlaVal : 188 |||..!||||||!!.:!!||| !! !|||:!!..!|||||| |||||| !:!! PheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeu 14039 : TTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTT : 13980 189 : IleLeuThrSerValTyrIleAlaCysAspIleAsnLeuValHisValValHisHisGly : 208 :!::!! !! !||||||:!!|||||||||! !!:!! !:!!:!!||||||!!.|||||| ValValPheTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGly 13979 : GTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGC : 13920 209 : CysAlaLeuLeuAlaIleSerGly : 216 |||!.!|||||||||:!:|||||| CysGlyLeuLeuAlaValSerGly 13919 : TGCGGATTGTTGGCCGTGTCCGGg : 13894 vulgar: gi|350396218|ref|XP_003484482.1| 128 216 . KQ414772.1 14157 13893 - 237 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13894 14157 237 - . gene_id 6 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13894 14157 . - . KQ414772.1 exonerate:protein2genome:local exon 13894 14157 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13894 14157 237 - . alignment_id 6 ; Query gi|350396218|ref|XP_003484482.1| ; Align 14158 129 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 217 Query range: 121 -> 216 Target range: 29640 -> 29355 122 : PheLeuSerCysLeuTyrGlnValSerIleSerPheCysAlaPheMetPheValLeuLeu : 141 |||...||| ::! !!.!!:! !! !|||||| ! !!!!:|||..!! !:!! PhePheSerSerArgPheThrAlaAsnGlyIlePheCysTyrValIlePheThrSerVal 29640 : tttttttcttcacgttTCACAGCAAATGGAATCTTCTGCTACGTTATATTCACCTCAGTG : 29583 142 : ProThrIleProProIleLeuAsnValValAlaProLeuAsnGluSerArgSerArgGlu : 161 !!! !! !|||! !:!!|||:!!:!!:!!:!!||| !||||||||||||.!! !! AlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValGly 29582 : GCGATAACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTGGGC : 29523 162 : PheIleTyrProSerTyrTyrPheValAspGluGlnGlnTyrTyrTyrProIleLeuVal : 181 ||||||||||||:!!|||||| !:!!||||||:!!:!!:!!|||||| !:!::!!! ! PheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrTyrLeuMetGly 29522 : TTCATTTATCCTGCATACTACGGTCTTGACGAAGAGGAGCATTACTACTATCTGATGGGT : 29463 182 : HisMetIleSerValAlaValIleLeuThrSerValTyrIleAlaCysAspIleAsnLeu : 201 ||||||:!!|||||| !..!:!!:!! !! !|||||||||:!!||||||! ! !! ! HisMetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThrIleTyr 29462 : CACATGCTTTCCGTGATAACCGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATCTAT : 29403 202 : ValHisValValHisHisGlyCysAlaLeuLeuAlaIleSerGly : 216 :!!:!!||||||!!.|||!.!|||!.!|||||| !:!!|||||| MetAsnValValGlnHisAlaCysGlyLeuLeuAsnValSerGly 29402 : ATGAATGTCGTGCAACACGCGTGTGGATTATTGAACGTCTCTGGG : 29356 vulgar: gi|350396218|ref|XP_003484482.1| 121 216 . KQ414772.1 29640 29355 - 217 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29356 29640 217 - . gene_id 7 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29356 29640 . - . KQ414772.1 exonerate:protein2genome:local exon 29356 29640 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 29356 29640 217 - . alignment_id 7 ; Query gi|350396218|ref|XP_003484482.1| ; Align 29641 122 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 215 Query range: 134 -> 215 Target range: 20565 -> 20322 135 : AlaPheMetPheValLeuLeuProThrIleProProIleLeuAsnValValAlaProLeu : 154 ||| !!!:|||:!!! !:!!||| ! !||| !||||||:!!:!! !||||||||| AlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeu 20565 : GCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTG : 20508 155 : AsnGluSerArgSerArgGluPheIleTyrProSerTyrTyrPheValAspGluGlnGln : 174 |||:!!!!!|||!.!|||! !|||:!!||||||:!!||||||!:::!!||| :!!||| AsnLysThrArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGln 20507 : AACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAA : 20448 175 : TyrTyrTyrProIleLeuValHisMetIleSerValAlaValIleLeuThrSerValTyr : 194 |||||| !!!::!!:!!|||!!:!!:! !|||!.!:!!!!::!! ! !:!!!:! TyrTyrMetIleMetIleIleHisIleMetPheValValIleMetValCysValIlePhe 20447 : TACTACATGATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTC : 20388 195 : IleAlaCysAspIleAsnLeuValHisValValHisHisGlyCysAlaLeuLeuAlaIle : 214 !|||||||||!!:|||! !|||:!!!.!|||!!.|||!.!|||!.!|||||||||:!! CysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaVal 20387 : TGTGCTTGCGACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTC : 20328 215 : Ser : 215 !!! Thr 20327 : ACC : 20323 vulgar: gi|350396218|ref|XP_003484482.1| 134 215 . KQ414772.1 20565 20322 - 215 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20323 20565 215 - . gene_id 8 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20323 20565 . - . KQ414772.1 exonerate:protein2genome:local exon 20323 20565 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20323 20565 215 - . alignment_id 8 ; Query gi|350396218|ref|XP_003484482.1| ; Align 20566 135 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 211 Query range: 120 -> 216 Target range: 24464 -> 24176 121 : ThrPheLeuSerCysLeuTyrGlnValSerIleSerPheCysAlaPheMetPheValLeu : 140 |||||| ||| ! ! !!.!!:! !! !|||||| ! !!:!:|||..! ! ThrPheSerSerLeuTyrValAlaAlaAsnGlyIlePheCysTyrValLeuPheThrAla 24464 : acattttcttctctataTGTCGCAGCAAATGGAATCTTCTGCTACGTTCTCTTCACCGCA : 24407 141 : LeuProThrIleProProIleLeuAsnValValAlaProLeuAsnGluSerArgSerArg : 160 :!! !!! !! !|||! !:!!|||:!!:!!:!!:!!||| !||||||||||||.!! ! ValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyVal 24406 : GTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTG : 24347 161 : GluPheIleTyrProSerTyrTyrPheValAspGluGlnGlnTyrTyrTyrProIleLeu : 180 ! ||||||||||||:!! !!||| !|||||||||:!!:!!:!!|||||| !:!::!! GlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyrTyrTyrLeuMet 24346 : GGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTACTACTATCTGATG : 24287 181 : ValHisMetIleSerValAlaValIleLeuThrSerValTyrIleAlaCysAspIleAsn : 200 ! !||||||:!!|||||| !..!:!!:!! !! !|||||||||:!!||||||! ! ! GlyHisMetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThrIle 24286 : GGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATC : 24227 201 : LeuValHisValValHisHisGlyCysAlaLeuLeuAlaIleSerGly : 216 ! !:!!:!!:!!|||!!.|||!.!|||!.!|||||| !:!!|||||| TyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSerGly 24226 : TACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCTGGG : 24177 vulgar: gi|350396218|ref|XP_003484482.1| 120 216 . KQ414772.1 24464 24176 - 211 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24177 24464 211 - . gene_id 9 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24177 24464 . - . KQ414772.1 exonerate:protein2genome:local exon 24177 24464 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 24177 24464 211 - . alignment_id 9 ; Query gi|350396218|ref|XP_003484482.1| ; Align 24465 121 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 206 Query range: 122 -> 216 Target range: 42754 -> 42472 123 : LeuSerCysLeuTyrGlnValSerIleSerPheCysAlaPheMetPheValLeuLeuPro : 142 :::||| :::::: |||!!! !! !! !||| ! ||||||:!!! ! !||| ValSerPheIlePheThrValThrGlyIleCysCysPheThrMetPheIleSerAlaPro 42754 : gtttctttcattttcacagTAACTGGAATATGTTGCTTCACAATGTTTATCTCTGCGCCT : 42697 143 : ThrIleProProIleLeuAsnValValAlaProLeuAsnGluSerArgSerArgGluPhe : 162 !||||||! !:!!! !:!!|||:!! ! !! !||||||||||||!.! !! ||| TyrIleProHisValTyrAspValMetLeuSerLysAsnGluSerArgLysLeuGlyPhe 42696 : TATATACCGCATGTATATGATGTTATGTTATCGAAAAACGAGTCACGAAAGTTGGGTTTC : 42637 163 : IleTyrProSerTyrTyrPheValAspGluGlnGlnTyrTyrTyrProIleLeuValHis : 182 |||||||||:!!|||||| !||||||:!!.!.:!!||||||||| !|||:!!!.!||| IleTyrProAlaTyrTyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAlaHis 42636 : ATTTACCCTGCCTATTATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCTCAC : 42577 183 : MetIleSerValAlaValIleLeuThrSerValTyrIleAlaCysAspIleAsnLeuVal : 202 |||! !|||! !!.!:!!:!::!! !! !..!!:!|||:!!||||||! ! !! !:!! MetThrSerGlyGlyLeuValValPhePheThrPheIleSerCysAspThrIleTyrMet 42576 : ATGACATCTGGGGGCTTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTACATG : 42517 203 : HisValValHisHisGlyCysAlaLeuLeuAlaIleSerGly : 216 :!!:!!|||!!.|||!.!|||!.!|||||| !||||||||| AsnIleValGlnHisAlaCysGlyLeuLeuLeuIleSerGly 42516 : AATATCGTGCAACACGCGTGCGGATTGTTGTTGATTTCTGGG : 42473 vulgar: gi|350396218|ref|XP_003484482.1| 122 216 . KQ414772.1 42754 42472 - 206 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42473 42754 206 - . gene_id 10 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42473 42754 . - . KQ414772.1 exonerate:protein2genome:local exon 42473 42754 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42473 42754 206 - . alignment_id 10 ; Query gi|350396218|ref|XP_003484482.1| ; Align 42755 123 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 188 Query range: 286 -> 377 Target range: 32137 -> 31763 287 : ArgLeuSerThrMetGluIleGlyValArgTyrPheThrPheCysAlaPheThrLeuSer : 306 ::! !|||! !|||!!: ! !!|||..!!:!!:!! ! !|||::!||| !:!! ! LysAlaSerMetMetAspProCysValGluPheTyrLysAspCysSerPheLeuValVal 32137 : aaGGCGTCTATGATGGATCCTTGCGTCGAGTTCTACAAGGATTGCAGTTTCCTTGTGGTG : 32080 307 : GlnMetThrHisLeuLeuPheLeuThrIleMetGlyGlnPheLeuIleAsnSerAsnAsp : 326 |||:!!..!|||||||||||||||:!!|||..!|||!!.|||:!!||| !|||:!!||| GlnLeuValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleValSerHisAsp 32079 : CAGCTGGTTCATTTGCTTTTCCTTTCCATCCAGGGACACTTCGTTATAGTCTCGCATGAT : 32020 327 : GluThrPheGlnAlaIleCys >>>> Target Intron 1 >>>> GluAlaLysT : 337 :!!..!!:!.!.::!!!:! 101 bp ...|||! !| GlnValTyrAspSerMet***++ +-SerAlaThrT 32019 : CAGGTTTACGATAGTATGTAAgt.........................acAGTGCAACGT : 31886 338 : rpTyrAsnGlySerSerLysThrGlnSerLeuTyrLeuLeuValLeuArgLysCysLeuS : 357 |||||!!..!!!!! !!!:!||||||!!!|||||| !|||!.!||||||!:! !!|||! rpTyrLysSerThrProArgThrGlnThrLeuTyrGlyLeuAlaLeuArgArgGlyLeuT 31885 : GGTACAAGAGTACGCCGAGAACGCAAACTTTGTACGGGCTAGCTTTGAGAAGAGGCTTGA : 31826 358 : erProProLysLeuThrGlyGlyGlyValIleSerLeuAsnLeuGluSerPheValGlnV : 377 !!|||||| !||||||!.!||||||:!!||||||||||||||||||!!!|||!.!:!!| hrProProValLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGluV 31825 : CTCCACCGGTGCTCACAGCTGGAGGATTGATTTCGTTGAATCTGGAGACTTTTGCTGAGG : 31766 378 : al : 377 || al 31765 : TG : 31764 vulgar: gi|350396218|ref|XP_003484482.1| 286 377 . KQ414772.1 32137 31763 - 188 M 47 141 5 0 2 I 0 97 3 0 2 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 31764 32137 188 - . gene_id 11 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 31997 32137 . - . KQ414772.1 exonerate:protein2genome:local exon 31997 32137 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 31995 31996 . - . intron_id 1 ; splice_site "Gt" KQ414772.1 exonerate:protein2genome:local intron 31896 31996 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 31896 31897 . - . intron_id 0 ; splice_site "AC" KQ414772.1 exonerate:protein2genome:local cds 31764 31895 . - . KQ414772.1 exonerate:protein2genome:local exon 31764 31895 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 31764 32137 188 - . alignment_id 11 ; Query gi|350396218|ref|XP_003484482.1| ; Align 32138 287 141 ; Align 31896 334 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 144 Query range: 333 -> 377 Target range: 41377 -> 41245 334 : GluAlaLysTrpTyrAsnGlySerSerLysThrGlnSerLeuTyrLeuLeuValLeuArg : 353 !!:||| !|||||||||.!!!!! !!!:!||||||!!!||||||:!!|||!.!|||||| AspAlaValTrpTyrAsnSerThrProArgThrGlnThrLeuTyrMetLeuAlaLeuArg 41377 : GATGCAGTATGGTACAACAGTACGCCAAGAACGCAAACTTTGTACATGCTAGCTTTGAGG : 41320 354 : LysCysLeuSerProProLysLeuThrGlyGlyGlyValIleSerLeuAsnLeuGluSer : 373 !:! !|||!!!|||||| !||||||!.!||||||:::||||||||||||||||||::: ArgThrLeuThrProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThr 41319 : AGGACTTTAACTCCACCACTGCTCACTGCAGGAGGACtgatttcgttgaatttggaaact : 41260 374 : PheValGlnVal : 377 ||| !:!!||| PheSerLysVal 41259 : ttttcGAAGGTA : 41246 vulgar: gi|350396218|ref|XP_003484482.1| 333 377 . KQ414772.1 41377 41245 - 144 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 41246 41377 144 - . gene_id 12 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 41246 41377 . - . KQ414772.1 exonerate:protein2genome:local exon 41246 41377 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 41246 41377 144 - . alignment_id 12 ; Query gi|350396218|ref|XP_003484482.1| ; Align 41378 334 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 120 -> 205 Target range: 45991 -> 45736 121 : ThrPheLeuSerCysLeuTyrGlnValSerIleSerPheCysAlaPheMetPheValLeu : 140 :!! !!|||||| ! ! !..!|||!!!|||! !.!! ! !.!! !:!!||| ! ! SerValLeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThr 45991 : TCCGTTTTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACC : 45934 141 : LeuProThrIleProProIleLeuAsnValValAlaProLeuAsnGluSerArgSerArg : 160 !||| !|||||| !||||||:!!:!!:!!:!!|||||||||||||||||| !!||| AlaProLeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArg 45933 : GCGCCCCTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGT : 45874 161 : GluPheIleTyrProSerTyrTyrPheValAspGluGlnGlnTyrTyrTyrProIleLeu : 180 !!:! !||| !:!!|||! !!:! !!:!! !.!..!.||||||||| !:!!:!! LeuTyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValVal 45873 : TTGTACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTG : 45814 181 : ValHisMetIleSerValAlaValIleLeuThrSerValTyrIleAlaCysAspIleAsn : 200 ! !:!!! ! !:!! ! !! !!!: ! ! !||| !:!!!.!..!||||||! ! GlyTyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAlaAspIleIle 45813 : GGGTACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATT : 45754 201 : LeuValHisValVal : 205 :!!:!!|||:!!||| MetIleHisLeuVal 45753 : ATGATACATCTTGTA : 45737 vulgar: gi|350396218|ref|XP_003484482.1| 120 205 . KQ414772.1 45991 45736 - 123 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45737 45991 123 - . gene_id 13 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45737 45991 . - . KQ414772.1 exonerate:protein2genome:local exon 45737 45991 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45737 45991 123 - . alignment_id 13 ; Query gi|350396218|ref|XP_003484482.1| ; Align 45992 121 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 272 Query range: 116 -> 216 Target range: 26288 -> 25988 117 : SerLysLysAlaThrPheLeuSerCysLeuTyrGlnValSerIleSerPheCysAlaPhe : 136 ..!:::... !:!!|||! !! ! !!! ! !||| !||||||!!.|||||| ! GluArgSerLeuSerPheTyrPheThrPheGluThrValHisIleSerLeuCysAlaAla 26288 : GAACGTTCTCTGTCATTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCT : 26231 137 : MetPheValLeuLeuProThrIleProProIleLeuAsnValValAlaProLeuAsnGlu : 156 :!:|||:!!! !|||||| !:!: !!|||||||||:!!:!!:!! !|||||||||||| LeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGlu 26230 : CTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAG : 26171 157 : SerArgSerArgGluPheIleTyrProSerTyrTyrPheValAspGluGlnGlnTyrTyr : 176 !!!|||:!!||| !|||:!!||||||:!!||||||||||||||||||.!.:!!|||:!! ThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHis 26170 : ACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCAT : 26111 177 : TyrProIleLeuValHisMetIleSerValAlaValIleLeuThrSerValTyrIleAla : 196 ||| !|||:!!! !|||||| ! !|||!.!|||!!:|||! !||||||!:! !||| TyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 26110 : TACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 26051 197 : CysAspIleAsnLeuValHisValValHisHisGlyCysAlaLeuLeuAlaIleSerGly : 216 |||||| !|||! !|||:!!!.!|||!!.|||!.!|||!.!||||||||||||:!!||| CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 26050 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 25991 vulgar: gi|350396218|ref|XP_003484482.1| 116 216 . LHQN01017803.1 26288 25988 - 272 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26288 272 - . gene_id 1 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26288 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26288 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26288 272 - . alignment_id 1 ; Query gi|350396218|ref|XP_003484482.1| ; Align 26289 117 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 248 Query range: 288 -> 377 Target range: 28921 -> 28521 289 : SerThrMetGluIleGlyValArgTyrPheThrPheCysAlaPheThrLeuSerGlnMet : 308 |||! !|||!!: ! !!:!!..!!:!!:!! !!:!||||||||| !:!! !|||:!! SerMetMetAspProCysMetGluPheTyrLysTyrCysAlaPheLeuValValGlnLeu 28921 : TCCATGATGGACCCTTGCATGGAGTTCTACAAGTATTGCGCTTTCTTGGTGGTGCAACTG : 28864 309 : ThrHisLeuLeuPheLeuThrIleMetGlyGlnPheLeuIleAsnSerAsnAspGluThr : 328 ..!|||||||||||||||:!!|||..!|||!!.|||:!!||| !|||:!!||| !||| ValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleLeuSerHisAspMetThr 28863 : GTTCATTTGCTTTTCCTTTCTATCCAGGGACACTTTGTTATACTCTCGCATGACATGACT : 28804 329 : PheGlnAla{Il} >>>> Target Intron 1 >>>> {e}CysGluAlaLysTrp : 337 !:!.!. !{||} 133 bp {|}! !...||||||||| TyrAspAsn{Il}++ ++{e}TyrSerAlaLysTrp 28803 : TACGACAAC{AT}gt.........................ag{A}TATAGCGCAAAATGG : 28644 338 : TyrAsnGlySerSerLysThrGlnSerLeuTyrLeuLeuValLeuArgLysCysLeuSer : 357 ||||||.!!||| !!!:!||||||!!!||||||:!!|||!.!||||||!:! !!|||!!! TyrAsnSerSerProArgThrGlnThrLeuTyrValLeuAlaLeuArgArgSerLeuThr 28643 : TACAACAGTTCGCCGAGAACGCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACT : 28584 358 : ProProLysLeuThrGlyGlyGlyValIleSerLeuAsnLeuGluSerPheValGlnVal : 377 |||||| !||||||!.!||||||:!!||||||||||||||||||!!!|||!.!:::||| ProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGluVal 28583 : CCGCCATTGCTCACTGCGGGAGGACTGATTTCCTTGAATTTGGAGACTTTTGCCGaggta : 28524 vulgar: gi|350396218|ref|XP_003484482.1| 288 377 . LHQN01017803.1 28921 28521 - 248 M 43 129 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 28522 28921 248 - . gene_id 2 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 28791 28921 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28791 28921 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 28789 28790 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 28658 28790 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 28658 28659 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 28522 28657 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28522 28657 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 28522 28921 248 - . alignment_id 2 ; Query gi|350396218|ref|XP_003484482.1| ; Align 28922 289 129 ; Align 28657 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 235 Query range: 133 -> 216 Target range: 14179 -> 13930 134 : CysAlaPheMetPheValLeuLeuProThrIleProProIleLeuAsnValValAlaPro : 153 |||!.!.!!:!!||||||! ! !|||..!! !|||! !||||||:!!:!!:!! !||| CysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuPro 14179 : TGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCG : 14122 154 : LeuAsnGluSerArgSerArgGluPheIleTyrProSerTyrTyrPheValAspGluGln : 173 !||||||||||||..! !! !!:!|||||||||:!!|||||||||..!||||||!!. LysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHis 14121 : AAGAACGAGTCACGAGACGTAGCGTACATTTATCCGGCCTATTATTTCACCGACGAGCAT : 14062 174 : GlnTyrTyrTyrProIleLeuValHisMetIleSerValAlaValIleLeuThrSerVal : 193 :!!||| !! !|||:!!..!|||||| |||||| !:!!:!::!! !! !||| LysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrVal 14061 : AAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTG : 14002 194 : TyrIleAlaCysAspIleAsnLeuValHisValValHisHisGlyCysAlaLeuLeuAla : 213 |||:!!|||||||||! !!:!! !:!!:!!||||||!!.|||||||||!.!||||||||| TyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAla 14001 : TACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCC : 13942 214 : IleSerGly : 216 :!:|||||| ValSerGly 13941 : GTGTCCGGg : 13931 vulgar: gi|350396218|ref|XP_003484482.1| 133 216 . LHQN01017803.1 14179 13930 - 235 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13931 14179 235 - . gene_id 3 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13931 14179 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13931 14179 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13931 14179 235 - . alignment_id 3 ; Query gi|350396218|ref|XP_003484482.1| ; Align 14180 134 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 211 Query range: 120 -> 216 Target range: 29658 -> 29370 121 : ThrPheLeuSerCysLeuTyrGlnValSerIleSerPheCysAlaPheMetPheValLeu : 140 |||||| ||| ! ! !!.!!:! !! !|||||| ! !!:!:|||..! ! ThrPheSerSerLeuTyrValAlaAlaAsnGlyIlePheCysTyrValLeuPheThrAla 29658 : acattttcttctctataTGTCGCAGCAAATGGAATCTTCTGCTACGTTCTCTTCACCGCA : 29601 141 : LeuProThrIleProProIleLeuAsnValValAlaProLeuAsnGluSerArgSerArg : 160 :!! !!! !! !|||! !:!!|||:!!:!!:!!:!!||| !||||||||||||.!! ! ValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyVal 29600 : GTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTG : 29541 161 : GluPheIleTyrProSerTyrTyrPheValAspGluGlnGlnTyrTyrTyrProIleLeu : 180 ! ||||||||||||:!! !!||| !|||||||||:!!:!!:!!|||||| !:!::!! GlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyrTyrTyrLeuMet 29540 : GGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTACTACTATCTGATG : 29481 181 : ValHisMetIleSerValAlaValIleLeuThrSerValTyrIleAlaCysAspIleAsn : 200 ! !||||||:!!|||||| !..!:!!:!! !! !|||||||||:!!||||||! ! ! GlyHisMetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThrIle 29480 : GGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATC : 29421 201 : LeuValHisValValHisHisGlyCysAlaLeuLeuAlaIleSerGly : 216 ! !:!!:!!:!!|||!!.|||!.!|||!.!|||||| !:!!|||||| TyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSerGly 29420 : TACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCTGGG : 29371 vulgar: gi|350396218|ref|XP_003484482.1| 120 216 . LHQN01017803.1 29658 29370 - 211 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29371 29658 211 - . gene_id 4 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29371 29658 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29371 29658 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 29371 29658 211 - . alignment_id 4 ; Query gi|350396218|ref|XP_003484482.1| ; Align 29659 121 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 204 Query range: 286 -> 377 Target range: 730 -> 340 287 : ArgLeuSerThrMetGluIleGlyValArgTyrPheThrPheCysAlaPheThrLeuSerGlnM : 308 !:! !|||! !|||!!: ! !!|||..!!:!!:!||| !|||!.!||| !:!! ! !!: LysThrSerMetMetAspProCysValGluPheTyrThrAspCysGlyPheLeuValVal***L 730 : AAGACGTCCATGATGGACCCTTGCGTAGAGTTCTACACGGATTGCGGTTTCTTGGTGGTGTAGC : 667 309 : etThrHisLeuLeuPheLeuThrIleMetGlyGlnPheLeuIleAsnSerAsnAspGluThrPh : 329 !:..!|||||||||||||||:!!||| !|||!!.|||:!!! ! !|||! |||:::...:: euValHisLeuLeuPheLeuSerIleProGlyHisPheValArgValSerIleAspGlnValTy 666 : TCGTTCATTTGCTTTTCCTTTCCATACCGGGACACTTCGTTAGAGTCTCCAttgaccaggttta : 604 330 : eGlnAla{Il} >>>> Target Intron 1 >>>> {e}CysGluAlaLysTrpTyrAsn : 339 :.....!{!!} 117 bp {:}! !!!:||| !||||||||| rAspCys{Me}++ ++{t}TyrAspAlaValTrpTyrAsn 603 : cgattgC{AT}gt.........................ag{G}TACGATGCAGTATGGTACAAC : 457 340 : GlySerSerLysThrGlnSerLeuTyrLeuLeuValLeuArgLysCysLeuSerProProLysL : 361 .!!!!!..!::!:!!|||! !||||||||||||!.!||||||!:!! !|||!!!|||||| !| SerThrGlnArgSerGlnIleLeuTyrLeuLeuAlaLeuArgArgSerLeuThrProProLeuL 456 : AGTACGCAGCGATCGCAAATTTTGTACCTGTTAGCTTTAAGGAGGTCTTTAACTCCACCACTGC : 391 362 : euThrGlyGlyGlyValIleSerLeuAsnLeuGluSerPheValGlnVal : 377 ||:!!!.!||||||:!!||||||||||||:!!|||!!!||| !:!!||| euSerAlaGlyGlyLeuIleSerLeuAsnMetGluThrPheSerLysVal 390 : TTTCTGCAGGAGGACTGATTTCGTTGAATATGGAAACTTTTTCGAAGGTA : 341 vulgar: gi|350396218|ref|XP_003484482.1| 286 377 . LHQN01017803.1 730 340 - 204 M 45 135 S 0 2 5 0 2 I 0 113 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 341 730 204 - . gene_id 5 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 594 730 . - . LHQN01017803.1 exonerate:protein2genome:local exon 594 730 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 592 593 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 477 593 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 477 478 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 341 476 . - . LHQN01017803.1 exonerate:protein2genome:local exon 341 476 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 341 730 204 - . alignment_id 5 ; Query gi|350396218|ref|XP_003484482.1| ; Align 731 287 135 ; Align 476 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 182 Query range: 117 -> 233 Target range: 18483 -> 18135 118 : LysLysAlaThrPheLeuSerCysLeuTyrGlnValSerIleSerPheCysAlaPheMet : 137 |||::: !.!! !|||..! ! :!!!:!! !|||!:! ! !.!!|||:!!|||:!! LysGlnLeuAlaThrLeuAspArgIlePheProValAsnAlaTyrIleCysSerPheLeu 18483 : aaacaattAGCAACTCTCGATCGGATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTG : 18426 138 : PheValLeuLeuProThrIleProProIleLeuAsnValValAlaProLeuAsnGluSer : 157 |||:!!! !:!!||| ! !!! !:!::!!||| ! ! ! !!! !||| !!!! PheIleGlnValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIleThr 18425 : TTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACG : 18366 158 : ArgSerArgGluPheIleTyrProSerTyrTyrPheValAspGluGlnGlnTyrTyrTyr : 177 ! !||| ! ! !!:!! |||.!!|||||||||||||||||| !:!!||||||||| ProSerLeuProValValValProGlyTyrTyrPheValAspGluValGluTyrTyrTyr 18365 : CCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTAT : 18306 178 : ProIleLeuValHisMetIleSerValAlaValIleLeuThrSerValTyrIleAlaCys : 197 !|||:!!:!!||| ! !!!..! !:!!|||:!!..! !|||||| !|||||| TyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCys 18305 : TACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 18246 198 : AspIleAsnLeuValHisValValHisHisGlyCysAlaLeuLeuAlaIleSerGlyTyr : 217 |||! !!:!! !:!! :!!|||!!.||| !|||!.!|||!!!|||:!::!!|||! AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly*** 18245 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGGTGA : 18186 218 : ArgPheLysHisAlaMetAspAsnValSerPheSerAsnGluLysTyr : 233 ..! ! !... :::|||||||||:::! !!!.||| GluAsnLeuArgAspThrPhePheLeuSerPheSerSerGlyAsnTyr 18185 : GAAAACTTGAGagatacattttttctctcattttcgtCGGGAAACTAT : 18136 vulgar: gi|350396218|ref|XP_003484482.1| 117 233 . LHQN01017803.1 18483 18135 - 182 M 116 348 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18136 18483 182 - . gene_id 6 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18136 18483 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18136 18483 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18136 18483 182 - . alignment_id 6 ; Query gi|350396218|ref|XP_003484482.1| ; Align 18484 118 348 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 144 Query range: 333 -> 386 Target range: 25040 -> 24881 334 : GluAlaLysTrpTyrAsnGlySerSerLysThrGlnSerLeuTyrLeuLeuValLeuArg : 353 |||:!!! !|||||||||..!|||!!!|||||||||:!!||||||:!!|||!.!|||||| GluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeuArg 25040 : GAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTACGG : 24983 354 : LysCysLeuSerProProLysLeuThrGlyGlyGlyValIleSerLeuAsnLeuGluSer : 373 !.. !!|||!:!|||||| !||||||!.!|||||| !!|||!!!|||||||||:!!!!! SerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLysThr 24982 : AGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAGACC : 24923 374 : PheValGlnValLeuLysAlaSerPheSerTyrTyrThr : 386 ||| !:!!||| !!:! ! !.!...! !!|||:!! PheSerGluValThrArgArgLeuIleGlnAspTyrSer 24922 : TTCTCAGAGGTAACGAGGCGACTAATACAAGATTACTCG : 24882 vulgar: gi|350396218|ref|XP_003484482.1| 333 386 . LHQN01017803.1 25040 24881 - 144 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 24882 25040 144 - . gene_id 7 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 24882 25040 . - . LHQN01017803.1 exonerate:protein2genome:local exon 24882 25040 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 24882 25040 144 - . alignment_id 7 ; Query gi|350396218|ref|XP_003484482.1| ; Align 25041 334 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 141 Query range: 333 -> 377 Target range: 22419 -> 22287 334 : GluAlaLysTrpTyrAsnGlySerSerLysThrGlnSerLeuTyrLeuLeuValLeuArg : 353 |||:!!! !|||||||||..!|||!!!|||||||||:!!||||||:!!|||!.!|||||| GluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeuArg 22419 : GAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTACGG : 22362 354 : LysCysLeuSerProProLysLeuThrGlyGlyGlyValIleSerLeuAsnLeuGluSer : 373 !.. !!|||!:!|||||| !||||||!.!|||||| !!|||!!!|||||||||:!!!!! SerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLysThr 22361 : AGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAGACC : 22302 374 : PheValGlnVal : 377 ||| !:!!||| PheSerGluVal 22301 : TTCTCAGAGGTA : 22288 vulgar: gi|350396218|ref|XP_003484482.1| 333 377 . LHQN01017803.1 22419 22287 - 141 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 22288 22419 141 - . gene_id 8 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 22288 22419 . - . LHQN01017803.1 exonerate:protein2genome:local exon 22288 22419 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 22288 22419 141 - . alignment_id 8 ; Query gi|350396218|ref|XP_003484482.1| ; Align 22420 334 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 141 Query range: 256 -> 377 Target range: 17874 -> 17028 257 : GluTyrValAspLysValAspAlaCysHisValHisTyrPhePheIleIleLeuGlyLeu : 276 ...!:!||| ! :!!:!!!!: ! !!|||! ! |||.!!|||! ! !||||||||| SerPheValLysGluIleGluArgGlyHisAspThrTyrLeuPheThrCysLeuGlyLeu 17874 : AGCTTTGTAAAGGAAATTGAACGCGGCCATGACACGTACCTTTTCACCTGCTTAGGCTTG : 17817 277 : IleIleValThrPheThrSerThrPheValArg >>>> Target Intron 1 >>>> : 288 :!:|||:!! !|||!:!! !|||.!.:!!!:! 483 bp ValIleLeuCysPheSerIleThrLeuIleLys++ 17816 : GTGATTCTATGCTTCAGTATTACTCTGATCAAGgt......................... : 17779 289 : LeuSerThrMetGluIleGlyValArgTyrPheThrPheCysAlaPheThrLeuSerG : 307 ||||||||| ... ::: ... ... --LeuSerThrLys***ArgLeuPheAsnValAlaSerGlnSerProLeuAspCysLysG 17778 : cattatccaccaagtgacgattgtttaacgtcgcttctcagtcgccactcgattgcaaag : 17241 308 : lnMetThrHisLeuLeuPheLeuThrIleMetGlyGlnPheLeuIleAsnSerAsnAspG : 327 |||:!!! ! !||| !..! ! !..! !! ! !! !!!!..!|||! ly***ThrTyrHisAsnPheAlaValAspSerAsnGlyThrProCysIleThrArgAspA 17240 : ggtgaACCTACCACAATTTTGCTGTTGATTCGAACGGCACTCCGTGTATCACACGCGATG : 17181 328 : luThrPheGlnAlaIleCysGluAlaLysTrpTyrAsnGlySerSerLysThrGlnSerL : 347 !:!.! :!!! !! !|||:!! !||||||!...!!|||||||||||||||:!!| spAsnGluThrSerArgTyrGluSerLeuTrpTyrThrSerSerSerLysThrGlnAlaL 17180 : ATAATGAAACTTCCAGATACGAATCATTATGGTACACAAGTTCTTCGAAAACACAAGCAT : 17121 348 : euTyrLeuLeuValLeuArgLysCysLeuSerProProLysLeuThrGlyGlyGlyValI : 367 |||||:!!:!!!.!||||||!:! !|||!!!||| !! ||||||!.!||||||:!!: euTyrValValAlaLeuArgArgAsnLeuThrProThrCysLeuThrAlaGlyGlyLeuV 17120 : TATACGTGGTAGCGTTACGAAGAAACCTAACACCTACCTGTTTAACGGCTGGCGGTTTAG : 17061 368 : leSerLeuAsnLeuGluSerPheValGlnVal : 377 !:..!||||||:!!:!!||||||!.!:!!||| alGlnLeuAsnMetGlnSerPheAlaGluVal 17060 : TGCAACTGAACATGCAAAGCTTCGCAGAGGTA : 17029 vulgar: gi|350396218|ref|XP_003484482.1| 256 377 . LHQN01017803.1 17874 17028 - 141 M 31 93 5 0 2 I 0 479 3 0 2 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 17029 17874 141 - . gene_id 9 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 17782 17874 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17782 17874 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 17780 17781 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 17299 17781 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 17299 17300 . - . intron_id 0 ; splice_site "ca" LHQN01017803.1 exonerate:protein2genome:local cds 17029 17298 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17029 17298 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 17029 17874 141 - . alignment_id 9 ; Query gi|350396218|ref|XP_003484482.1| ; Align 17875 257 93 ; Align 17299 288 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 120 -> 205 Target range: 33738 -> 33483 121 : ThrPheLeuSerCysLeuTyrGlnValSerIleSerPheCysAlaPheMetPheValLeu : 140 :!! !!|||||| ! ! !..!|||!!!|||! !.!! ! !.!! !:!!||| ! ! SerValLeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThr 33738 : TCCGTTTTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACC : 33681 141 : LeuProThrIleProProIleLeuAsnValValAlaProLeuAsnGluSerArgSerArg : 160 !||| !|||||| !||||||:!!:!!:!!:!!|||||||||||||||||| !!||| AlaProLeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArg 33680 : GCGCCCCTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGT : 33621 161 : GluPheIleTyrProSerTyrTyrPheValAspGluGlnGlnTyrTyrTyrProIleLeu : 180 !!:! !||| !:!!|||! !!:! !!:!! !.!..!.||||||||| !:!!:!! LeuTyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValVal 33620 : TTGTACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTG : 33561 181 : ValHisMetIleSerValAlaValIleLeuThrSerValTyrIleAlaCysAspIleAsn : 200 ! !:!!! ! !:!! ! !! !!!: ! ! !||| !:!!!.!..!||||||! ! GlyTyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAlaAspIleIle 33560 : GGGTACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATT : 33501 201 : LeuValHisValVal : 205 :!!:!!|||:!!||| MetIleHisLeuVal 33500 : ATGATACATCTTGTA : 33484 vulgar: gi|350396218|ref|XP_003484482.1| 120 205 . LHQN01017803.1 33738 33483 - 123 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33484 33738 123 - . gene_id 10 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33484 33738 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33484 33738 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33484 33738 123 - . alignment_id 10 ; Query gi|350396218|ref|XP_003484482.1| ; Align 33739 121 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 0 -> 58 Target range: 26859 -> 26685 1 : MetAspTrpGlnThrIleGluAspGlnCysLeuLysAlaAsnLysPhePheGlyGlnLeu : 20 |||||| ! |||:!!||| ! !::! !|||!:! !|||||| .!!|||..!||| MetAspAlaIleThrLeuGluLysArgTyrLeuArgIleAsnLysLysLeuGlyMetLeu 26859 : ATGGACGCGATCACGTTAGAGAAACGTTACTTGAGAATCAACAAGAAGCTCGGTATGCTA : 26802 21 : ValGlyValTrpProAsnGlnGluLysPheThrLysIleIleIleArgPheValIlePhe : 40 ..!|||||||||||| !!|||:!!!..! !!||| |||! !||| !|||:!:.!! ThrGlyValTrpProTyrGlnLysSerSerProLysTrpIleSerArgThrValValLeu 26801 : ACCGGTGTGTGGCCCTATCAAAAGAGCTCGCCAAAATGGATCAGTCGAACCGTAGTGCTC : 26742 41 : IleIleIleIleThrThrIleThrAlaGlnIleSerArgValValValPheTyr : 58 .!!:!!|||||| !! ! !..!.!!|||:!!...:::::: :::..!!:! PheValIleIleProCysTyrValThrGlnValGluLysIleArgIleIlePhe 26741 : TTTGTAATAATACCTTGTTACGTTACACAGGTAgaaaaaataaggattatCTTT : 26686 vulgar: gi|350396218|ref|XP_003484482.1| 0 58 . LHQN01017803.1 26859 26685 - 105 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 26686 26859 105 - . gene_id 11 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 26686 26859 . - . LHQN01017803.1 exonerate:protein2genome:local exon 26686 26859 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 26686 26859 105 - . alignment_id 11 ; Query gi|350396218|ref|XP_003484482.1| ; Align 26860 1 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350399566|ref|XP_003485570.1| PREDICTED: uncharacterized protein LOC100741772 [Bombus impatiens] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 105 -> 191 Target range: 26231 -> 25976 106 : GlyLeuPheLeuLeuValProLeuIleSerProIleLeuAspIleValHisProIleAsn : 125 !.!||||||:!!! !:!!|||!!!:!:||||||||||||||||||:!! |||:!:||| AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsn 26231 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAAC : 26174 126 : GlyThrArgThrArgGlnGlnLeuLeuArgValAsnTyrIlePhePheAspAspAspAsp : 145 ! !||||||.!!||| !!!!:!! ! ! !||| !||| !!|||!!:||| ! GluThrArgAlaArg---LeuPheValTyrProAlaTyrTyrPheValAspGluAspLys 26173 : GAGACGCGAGCACGG---TTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAA : 26117 146 : TyrPhePheTyrIleTyrLeuGlnLeuPheCysGlyAlaAlaValValValTyrThrIle : 165 ||| !!:!! ||| !!!.:!!!:! !! !!.!!.!:!!:!!:!!! !..!.!! TyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPhe 26116 : TATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTC : 26057 166 : IleGlyAlaAspTrpLeuTyrMetLeuIleIleHisHisSerSerGlyLeuPheAlaVal : 185 !!.!..!||| !|||:!!! ! !:!:!!.|||:!!!!!||||||!!.|||:!! CysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 26056 : TGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 25997 186 : CysGlyHisArgValGln : 191 ...||| ! !|||||| AlaGly***LeuValGln 25996 : GCAGGGTAATTAGTTCAA : 25977 vulgar: gi|350399566|ref|XP_003485570.1| 105 191 . LHQN01017803.1 26231 25976 - 130 M 25 75 G 1 0 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25977 26231 130 - . gene_id 1 ; sequence gi|350399566|ref|XP_003485570.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25977 26231 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25977 26231 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25977 26231 130 - . alignment_id 1 ; Query gi|350399566|ref|XP_003485570.1| ; Align 26232 106 75 ; Align 26157 132 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 341 -> 391 Target range: 39974 -> 40124 342 : IleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProGlyLysThrIleLeuAsp : 361 ||||||:!! !!.!||| !||||||||| !!|||||| !||| ! !:!!... IleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHisAlaValSer 39975 : ATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCATGCTGTTTCG : 40032 362 : LeuIleMetValIleAlaArgSerAsnValValValHisIleThrAlaGlyLysLeuVal : 381 |||:!!!!:||||||..!|||:!!.!.||| ! !!!!.|||||||||||||||!!! ! LeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGlyLysPheSer 40033 : TTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGT : 40092 382 : HisMetSerValTyrThrPheGlySerVal : 391 ! !.!.|||:!! ! !|||..!:!!||| ProPheSerLeuGluLeuPheAsnAlaVal 40093 : CCCTTTTCTCTCGAGCTGTTTAACGCTGTG : 40124 vulgar: gi|350422524|ref|XP_003493190.1| 341 391 . KQ414804.1 39974 40124 + 102 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39975 40124 102 + . gene_id 1 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39975 40124 . + . KQ414804.1 exonerate:protein2genome:local exon 39975 40124 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39975 40124 102 + . alignment_id 1 ; Query gi|350422524|ref|XP_003493190.1| ; Align 39975 342 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 125 -> 215 Target range: 457144 -> 457414 126 : LeuTyrGlnValSerIleSerPheCysAlaPheMetPheValLeuLeuProThrIleP : 145 :!! ! !||||||! !! !! ! !!|||.!.:!:.!!..! !|||! ! !.!!| MetIleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheP 457145 : ATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTC : 457202 146 : roProIleLeuAsnValValAlaProLeuAsnGluSerArgSerArgGluPheIleTy : 164 || !:!!|||:!!:!!|||!.!|||||||||||||||||| !! !!|||!!. ! roIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrLe 457203 : CGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCT : 457259 165 : rProSerTyrTyrPheValAspGluGlnGlnTyrTyrTyrProIleLeuValHisMet : 183 ! !!:!! ! |||||||||||| !:!!:!!||| :!! !|||:!!!.!|||!!: uThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIle 457260 : TACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATT : 457316 184 : IleSerValAlaValIleLeuThrSerValTyrIleAlaCysAspIleAsnLeuValH : 203 |||!!! ! !:!!||| !.!!!!!..!! ! !||| !!!: ! |||:!! IleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleT 457317 : ATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAA : 457376 204 : isValValHisHisGlyCysAlaLeuLeuAlaIleSer : 215 !|||! |||! !|||!.!|||!!! !:!!!!! hrAsnValLeuHisValCysGlyLeuPheLysLeuThr 457377 : CGAACGTACTGCACGTTTGTGGATTGTTCAAGCTTACT : 457414 vulgar: gi|350396218|ref|XP_003484482.1| 125 215 . KQ414815.1 457144 457414 + 122 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457145 457414 122 + . gene_id 1 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457145 457414 . + . KQ414815.1 exonerate:protein2genome:local exon 457145 457414 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457145 457414 122 + . alignment_id 1 ; Query gi|350396218|ref|XP_003484482.1| ; Align 457145 126 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 146 -> 214 Target range: 482031 -> 482235 147 : IleLeuAsnValValAlaProLeuAsnGluSerArgSerArgGluPheIleTyrProS : 166 :!!|||:!!|||:!!!.!||||||||||||!!!|||!!!!.!:!!||| ! !!! ValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerM 482032 : GTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAA : 482089 167 : erTyrTyrPheValAspGluGlnGlnTyrTyrTyrProIleLeuValHisMetIleSe : 185 ! ! ||||||:!!|||:!!|||:!!|||! ! !||| ! !!|||..! ! etGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPh 482090 : TGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTT : 482146 186 : rValAlaValIleLeuThrSerValTyrIleAlaCysAspIleAsnLeuValHisVal : 204 ! ! !:!!:!!:!!.!!!!!:!! !:!!!.! !!:! ! :!!||| ! eSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrp 482147 : TTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGG : 482203 205 : ValHisHisGlyCysAlaLeuLeuAlaIle : 214 :!!.!.|||!.!...::!|||!!!.!!:!! LeuGluHisAlaAlaSerLeuPheThrLeu 482204 : CTTGAACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: gi|350396218|ref|XP_003484482.1| 146 214 . KQ414815.1 482031 482235 + 100 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482032 482235 100 + . gene_id 2 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482032 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 482032 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482032 482235 100 + . alignment_id 2 ; Query gi|350396218|ref|XP_003484482.1| ; Align 482032 147 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825627|ref|XP_012152698.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 563 Query range: 0 -> 300 Target range: 32075 -> 34304 1 : MetValAspAsnPheLeuAsnAlaLysTyrAspAspPheGluLeuGlnIleLeuMetAsp : 20 ||| ||||||...::: ...||||||.!. !||| !...|||:!! !! MetGlnLysAsnPhePheHisLeuAsnTyrAspGlnAspGluAsnSerIleIleAlaHis 32076 : ATgcagaagaatttctttcatttgaaCTACGATCAGGACGAGAATTCTATTATCGCACAC : 32133 21 : CysLysArgLysSerLysPhePheValCysIlePheIleLeuPheThrGluValThrVal : 40 ...||||||! !!!!! !:!|||||||||:!!||| !!!!! !:!!:!! !|||||| AlaLysArgThrCysIleTyrPheValCysValPheSerPheCysSerGlnSerThrVal 32134 : GCGAAACGAACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTTCTCAATCTACAGTT : 32193 41 : LeuSerTyrAlaCysThrProLeuIle{G} >>>> Target Intron 1 >>>> { : 50 !!!|||||| ! ! !|||!!!:!!{.} 170 bp { PheSerTyrIleIleArgProPheVal{S}++ ++{ 32194 : TTTTCCTATATAATAAGGCCATTTGTA{T}gt.........................ag{ : 32394 51 : lu}AsnLeuSerArgAsnGluSerAspLysAlaPheProPheArgMetTrpIleLysSer : 69 .!}||||||.!!!:!||||||||||||!:!! ! ! !!:! !||||||:!! ..! er}AsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu---Asp 32395 : ca}AATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC---GAT : 32447 70 : IleProLeuGlnGluThrProTyrTyrGluIleCysTyrThrValGln >>>> Targe : 86 :!!||||||...! !|||||||||||||||||| |||! !:!!||| LeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGln++ 32448 : CTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGgt.......... : 32500 87 : t Intron 2 >>>> AlaValSerValTyrMetValGlyArgThrTyrPheSerLeuA : 100 307 bp |||:!!|||||||||...|||||| ! !|||.!!!!!!..| ++AlaLeuSerValTyrGlnValGlyValCysTyrLeuCysPheA 32501 : ...............agGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCTttg : 32847 101 : spAsnIleLeuCysIleIleAsnLeuHisLeuAlaGlyGlnPheArgMetLeuGlnTyrA : 120 ||||||||... |||::: !||||||:!!|||||||||||||||!!:|||||||||| spAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrA 32848 : ataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACA : 32907 121 : rgLeuSerGluLysTyrThrLysAsnGln<-><->LysLysAsnAspGluSerArgAsnL : 138 ||:!!:!!.!. !! ! !!:!:!! |||!..||||||.!.!!!!!!!.. rgIleAlaAsnValSerGlyLeuSerGluIleValLysSerAsnAspAsnThrSerThrA 32908 : GAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACAAGCACGG : 32967 139 : euLeuAspLeuAlaAsnAsnAlaThrAspIlePheLysSerCysIleArgGlnHisGlnA : 158 ! ! ! !:!!.!.!!...! ! !! ||||||!:!||||||!:!|||||||||| laGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnA 32968 : CTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGG : 33027 159 : laLeuValGluTyrCysGluGluValAspAlaValPheSerProCysValLeuIleGlnV : 178 |||||:::|||:::|||||| ::!!!:! !||||||!!! ! !|||||| !|||| laLeuIleGluPheCysGluIleLeuGluGluValPheThrValIleValLeuGlyGlnV 33028 : CACTaattgaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAG : 33087 179 : alLeuAlaPheSerIlePheIleCysLeuAspGlyTyrGlnMetLeuLeu >>>> Tar : 195 ||||| !|||||||||.!.||||||!!!! !||||||:!!:!:|||||| alLeuMetPheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeu++ 33088 : TACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGgt........ : 33140 196 : get Intron 3 >>>> ValAspIle<->PheGluArgGlnIleIlePheValPheHi : 207 406 bp :!! :!! |||||| !!:::!! !|||..!! ! ++IleThrLeuProPheGluSerArgValAlaPheThrCysPh 33141 : .................agATAACGTTACCATTTGAATCGCGCGTTGCTTTCACGTGCTT : 33583 208 : sPheLeuGlyThrValCysGlnLeuValMetPheSerTyrSerCysAspCysIleIleAr : 227 !!!.:!! ! !||| !!|||||| !||||||!!!|||||||||:!!||||||! !! eLeuIleThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAsnCysIleThrTh 33584 : CTTGATTACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCAATTGCATAACAAC : 33643 228 : gGluSerGluLeuLeuAlaThrAlaAlaPheSerGlyProTrpLeuGlnLeuProSerSe : 247 !|||||| ! !:!!||| !:!!!.!!:!:!!|||||||||:!!.!.||||||! .. rGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAs 33644 : AGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATgga : 33703 248 : rLysArgIleGluAsnLeuLysLysAspPheIleMetLeuIleMetArgSerTyrLysSe : 267 .||| ::: |||!:!||||||!!. !:!!||||||:!!|||:!! ::! ! pLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgPr 33704 : taaatttggaaaactgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGAGACGACC : 33763 268 : rCysTyrIleSerGlyLeuGlyPhePheIleValSerLeuGluThrSerThrArg >>> : 286 !! ! !:!:!!!!.!! !||||||||| !:!!!!!|||||||||! !|||!:! oSerAlaLeuThrAlaCysGlyPhePheSerIleThrLeuGluThrPheThrLys++ 33764 : TTCCGCTTTGACTGCCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTACTAAGgt... : 33822 287 : > Target Intron 4 >>>> ValLeuThrThrAlaGlySerTyrPheThrLeuLeu : 297 440 bp :!!:!!!:!|||:!! !|||||||||||||||||| ++IleMetSerThrSerMetSerTyrPheThrLeuLeu 33823 : ......................agATCATGAGTACATCAATGTCGTATTTCACCCTACTA : 34293 298 : GlnGluThr : 300 :!!:!!!:! LysGlnSer 34294 : AAACAAAGT : 34304 vulgar: gi|805825627|ref|XP_012152698.1| 0 300 . KQ414828.1 32075 34304 + 563 M 49 147 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 17 51 G 1 0 M 17 51 5 0 2 I 0 303 3 0 2 M 44 132 G 0 6 M 65 195 5 0 2 I 0 402 3 0 2 M 3 9 G 0 3 M 88 264 5 0 2 I 0 436 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32076 34304 563 + . gene_id 1 ; sequence gi|805825627|ref|XP_012152698.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32076 32223 . + . KQ414828.1 exonerate:protein2genome:local exon 32076 32223 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32224 32225 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32224 32393 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32392 32393 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 32394 32497 . + . KQ414828.1 exonerate:protein2genome:local exon 32394 32497 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 32498 32499 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32498 32804 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 32803 32804 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32805 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32805 33137 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 4 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34304 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34304 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32076 34304 563 + . alignment_id 1 ; Query gi|805825627|ref|XP_012152698.1| ; Align 32076 1 147 ; Align 32396 51 51 ; Align 32447 69 51 ; Align 32805 86 132 ; Align 32943 130 195 ; Align 33544 195 9 ; Align 33556 198 264 ; Align 34260 286 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825627|ref|XP_012152698.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 531 Query range: 50 -> 304 Target range: 2882 -> 5265 51 : AsnLeuSerArgAsnGluSerAspLysAlaPheProPheArgMetTrpIleLysSerIlePr : 71 !:::::...:::||||||||||||!:! !.!! ! !!!.!.!.|||||| ..!:!:|| SerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIle---AspLeuPr 2883 : AgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATT---GACCTGCC : 2940 72 : oLeuGlnGluThrProTyrTyrGluIleCysTyrThrValGln >>>> Target Intro : 86 |:!! |||||||||||||||||| :::|||:!!||| 406 bp oIleThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2941 : GATAACCATCACACCATactatgaaatattatttacgaTACAGgt................. : 2987 87 : n 1 >>>> AlaValSerValTyrMetValGlyArgThrTyrPheSerLeuAspAsnIleL : 103 ! !!! !:!! ||| !!! !!:!|||.!!!!!:!!||||||.!!| ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheL 2988 : ........agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTC : 3442 104 : euCysIleIleAsnLeuHisLeuAlaGlyGlnPheArgMetLeuGlnTyrArgLeuSerGlu : 123 |||||!!:|||||||||||| !||| !|||||||||!!:||||||||||||||||||.!. euCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsn 3443 : TGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAAT : 3502 124 : LysTyrThrLysAsnGlnLysLysAsnAspGluSerArgAsnLeuLeuAspLeuAlaAsnAs : 144 !! ! ! !|||:!!:::!..::: |||:::... ! !..! !:!!:!!.! ValCysGlyAlaAsnGluArgSerAspLysIleSerLysLysThrProSerAsnSerAspGl 3503 : GTGTGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTCGGACGA : 3565 145 : nAlaThrAspIlePheLysSerCysIleArgGlnHisGlnAlaLeuValGluTyrCysGluG : 165 ...! !! !! ||||||!:!||||||!:!|||||||||||||||:!!|||||||||.!.: uCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnL 3566 : ATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACA : 3628 166 : luValAspAlaValPheSerProCysValLeuIleGlnValLeuAlaPheSerIlePheIle : 185 !!:!!.!.! !||||||.!! !! !|||||| !||||||||| !||||||:!:!!.!!: ysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeuLeuMet 3629 : AACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATG : 3688 186 : CysLeuAspGlyTyrGlnMetLeu >>>> Target Intron 2 >>>> LeuValAsp : 196 ||||||||||||||| !:!!:!! 457 bp !! ! ! CysLeuAspGlyTyrLeuValMet++ ++GluAspThr 3689 : TGCCTCGATGGATATTTGGTGATGgt.........................agGAAGATACT : 4178 197 : IlePheGluArgGlnIleIlePheValPheHisPheLeuGlyThrValCysGlnLeuValMe : 217 !.!! !!:!!:::!!! !|||:!!||||||.!. !||| !:!!|||||||||:!!|| ProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuMe 4179 : CCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGAT : 4241 218 : tPheSerTyrSerCysAspCysIleIleArgGluSerGluLeuLeuAlaThrAlaAlaPheS : 238 ||||!!!|||||||||||||||:!:|||||||||||| ! !:!!|||!.!||| !!:!. tPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIleTyrA 4242 : GTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATATACG : 4304 239 : erGlyProTrpLeuGlnLeuProSerSerLysArgIleGluAsnLeuLysLysAspPheIle : 258 .! !! !!|||:!!!!.||||||! !..!!:! ! ..!! |||::!||||||!!.! ! spCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAspLeuThr 4305 : ACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGACA : 4364 259 : MetLeuIleMetArgSerTyrLysSerCysTyrIleSerGlyLeuGlyPhePheIleValSe : 279 .!.:!!||| |||||| ! !!|||! !:!!!!!!.!! !||||||||| !||||| PheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePheProValSe 4365 : TTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTC : 4427 280 : rLeuGluThrSerThrArg >>>> Target Intron 3 >>>> ValLeuThrThrAl : 290 ||||||||||! !||| ! 761 bp :!!|||!:!||||| rLeuGluThrTyrThrSer++ ++IleLeuSerThrAl 4428 : ACTGGAAACGTACACTTCGgt.........................agATTTTAAGTACCGC : 5221 291 : aGlySerTyrPheThrLeuLeuGlnGluThrGlnThrLysVal : 304 |!.!||||||||||||||||||!:!.!. !:!!.!!:!!:!! aAlaSerTyrPheThrLeuLeuArgAsnGlnGluAlaGluIle 5222 : AGCGTCATACTTCACACTGCTACGAAACCAAGAAGCAGAAATA : 5265 vulgar: gi|805825627|ref|XP_012152698.1| 50 304 . KQ414828.1 2882 5265 + 531 M 17 51 G 1 0 M 17 51 5 0 2 I 0 402 3 0 2 M 108 324 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 757 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2883 5265 531 + . gene_id 2 ; sequence gi|805825627|ref|XP_012152698.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2883 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2883 2984 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 5208 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 5207 5208 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 5209 5265 . + . KQ414828.1 exonerate:protein2genome:local exon 5209 5265 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2883 5265 531 + . alignment_id 2 ; Query gi|805825627|ref|XP_012152698.1| ; Align 2883 51 51 ; Align 2934 69 51 ; Align 3391 86 324 ; Align 4172 194 276 ; Align 5209 286 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825627|ref|XP_012152698.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 425 Query range: 47 -> 299 Target range: 22307 -> 24181 48 : LeuIleGluAsnLeuSerArgAsnGluSerAspLysAlaPheProPheArgMetTrpIle : 67 :::::: ||||||.!!!:!||||||||||||!:!! ! ! !!:! !||||||:!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 22308 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 22365 68 : LysSerIleProLeuGlnGluThrProTyrTyrGluIleCysTyrThrValGlnAlaVal : 87 ..!:!!||||||...! !|||||||||||||||||| |||! !:!!|||!.!:!! ---AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeu 22366 : ---GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTA : 22422 88 : SerValTyrMet{V} >>>> Target Intron 1 >>>> {al}GlyArgThrTyr : 96 !!:!!!:! {:} 307 bp {!!}.!! ! !||| ProIlePheSer{I}+- ++{le}SerAlaCysTyr 22423 : CCAATTTTCTCA{A}gg.........................ag{TT}AGCGCGTGTTAC : 22756 97 : PheSerLeuAspAsnIleLeuCysIleIleAsnLeuHisLeuAlaGlyGlnPheArgMet : 116 .!!!!!...||| |||... |||::: ||||||:!!|||||||||||||||!!: LeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIle 22757 : CTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATA : 22816 117 : LeuGlnTyrArgLeuSerGluLysTyrThrLysAsnGln<->LysLysAsnAspGluSer : 135 ||||||||||||:!!:!!.!. !! ! !!:!:!! !|||!:!..!|||!:! LeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluAsn 22817 : CTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAAT : 22876 136 : ArgAsnLeuLeuAspLeuAlaAsnAsnAlaThrAspIle<->PheLysSerCysIleArg : 154 ! !!:! ! !!!:||| !:::.!. ! ! !!||| ||||||!:!||||||!:! ProSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGln 22877 : CCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAA : 22936 155 : GlnHisGlnAlaLeuValGluTyrCysGluGluValAspAlaValPheSerProCysVal : 174 |||||||||||||||:!!|||!:!|||! ! !:!!!!:! !||||||!!! ! !||| GlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleVal 22937 : CAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTA : 22996 175 : LeuIleGlnValLeuAlaPheSerIlePheIleCysLeuAspGlyTyrGlnMetLeuLeu : 194 ||| !||||||||| !! !||||||!!.||||||!!! !|||||||||:!:|||||| LeuGlyGlnValLeuMetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeu 22997 : CTCGGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTG : 23056 195 : >>>> Target Intron 2 >>>> ValAspIle<->PheGluArgGlnIleIleP : 204 492 bp :!! ! :!! |||||| !!:::!! !| ++ ++IleLysLeuSerPheGluSerArgValAlaP 23057 : gt.........................agATAAAGTTATCATTTGAATCGCGCGTTGCTT : 23581 205 : heValPheHisPheLeuGlyThrValCysGlnLeuValMetPheSerTyrSerCysAspC : 224 ||!.!! ! !!!.:!! ! !:!! !!|||||| !||||||!!!||||||||||||| heAlaCysPheLeuMetMetGlyMetSerGlnLeuTrpMetPheThrTyrSerCysAspC 23582 : TCGCGTGCTTCTTGATGATGGGCATGAGTCAACTATGGATGTTCACGTATAGTTGCGATT : 23641 225 : ysIleIleArgGluSerGluLeuLeuAlaThrAlaAlaPheSerGlyProTrpLeuGlnL : 244 |||||! !! !|||||| ! !:!!||| !:!!!.!!:!:!!|||||||||:!!.!.| ysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnL 23642 : GCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATT : 23701 245 : euProSerSerLysArgIleGluAsnLeuLysLysAspPheIleMetLeuIleMetArgS : 264 |||||! !..!||| ! !:!! |||!:!|||!!:!!. !|||||||||:!!|||: euProMetAspLysPheGlyLysLeuLeuArgLysGluLeuGlnMetLeuIleLeuArgA 23702 : TACCAATGGACAAATTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGGG : 23761 265 : erTyrLysSerCysTyrIleSerGlyLeuGlyPhePheIleValSerLeuGluThrSerT : 284 !! ::! !!! ! !:!:!!!!.!! !||||||||| !:!!||||||||||||! !| laArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheT 23762 : CGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTA : 23821 285 : hrArg >>>> Target Intron 3 >>>> ValLeuThrThrAlaGlySerTyrPh : 294 ||!:! 313 bp :!!:!!!:!|||:!! !|||||||| hrLys++ ++IleMetSerThrSerMetSerTyrPh 23822 : CTAAGgt.........................agATCATGAGTACATCAATGTCGTATTT : 24164 295 : eThrLeuLeuGlnGlu : 299 ||||||||||:!!:!! eThrLeuLeuLysGln 24165 : CACATTATTAAAACAA : 24181 vulgar: gi|805825627|ref|XP_012152698.1| 47 299 . KQ414828.1 22307 24181 + 425 M 20 60 G 1 0 M 23 69 S 0 1 5 0 2 I 0 303 3 0 2 S 1 2 M 37 111 G 0 3 M 19 57 G 0 3 M 46 138 5 0 2 I 0 488 3 0 2 M 3 9 G 0 3 M 88 264 5 0 2 I 0 309 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22308 24181 425 + . gene_id 3 ; sequence gi|805825627|ref|XP_012152698.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22308 22437 . + . KQ414828.1 exonerate:protein2genome:local exon 22308 22437 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 22438 22439 . + . intron_id 1 ; splice_site "GG" KQ414828.1 exonerate:protein2genome:local intron 22438 22744 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22743 22744 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22745 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22745 23058 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23059 23060 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23059 23550 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 23549 23550 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 23551 23826 . + . KQ414828.1 exonerate:protein2genome:local exon 23551 23826 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23827 23828 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23827 24139 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 24138 24139 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 24140 24181 . + . KQ414828.1 exonerate:protein2genome:local exon 24140 24181 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22308 24181 425 + . alignment_id 3 ; Query gi|805825627|ref|XP_012152698.1| ; Align 22308 48 60 ; Align 22368 69 69 ; Align 22747 93 111 ; Align 22861 130 57 ; Align 22921 149 138 ; Align 23551 195 9 ; Align 23563 198 264 ; Align 24140 286 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825627|ref|XP_012152698.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 379 Query range: 140 -> 305 Target range: 18219 -> 19915 141 : LeuAlaAsnAsnAlaThrAspIlePheLysSerCysIleArgGlnHisGlnAlaLeuVal : 160 !!!|||!...!...! !:!!:!!.!!|||..!! !||||||||||||||| !|||:!! PheAlaThrGluCysTyrAsnValLeuLysAspTyrIleArgGlnHisGlnAsnLeuIle 18220 : TTTGCAACAGAATGTTACAACGTTCTCAAAGATTATATCAGACAGCATCAGAACCTGATT : 18277 161 : GluTyrCysGluGluValAspAlaValPheSerProCysValLeuIleGlnValLeuAla : 180 ! ||||||.!.:!!:!!!!: !||||||!:! ! !|||||| |||:!!||| ! AlaTyrCysAsnLysLeuGluLysValPheAsnIleIleValLeuGlyGlnLeuLeuMet 18278 : GCTTATTGCAACAAACTCGAGAAAGTGTTCAATATCATTGTTCTGGGGCAATTGTTAATG : 18337 181 : PheSerIlePheIleCysLeuAspGlyTyrGlnMetLeuLeuValAspIlePhe{Gl} : 199 ||||||!!:!!.|||||||||||||||!:!|||!!:|||:!!|||! !!!: {..} PheSerMetLeuIleCysLeuAspGlyPheGlnIleLeuMetValGlyMetArg{Ar}-+ 18338 : TTCAGCATGTTGATCTGTCTCGATGGATTTCAGATACTTATGGTTGGTATGAGA{AG}tt : 18396 200 : >>>> Target Intron 1 >>>> {u}ArgGlnIleIlePheValPheHisPheLeu : 209 978 bp {!}! !!:!:!:||||||:!!||||||.!. ! ++{g}ThrArgLeuIlePheIlePheHisIleGly 18397 : .........................ag{A}ACCCGACTGATTTTCATCTTTCACATAGGA : 19402 210 : GlyThrValCysGlnLeuValMetPheSerTyrSerCysAspCysIleIleArgGluSer : 229 !.! !:!!|||||||||:!!||||||!!!|||||||||||||||||||||||||||||| AlaCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSer 19403 : GCATGCATGTGTCAATTGCTGATGTTTACCTACAGCTGCGACTGCATCATAAGAGAAAGC : 19462 230 : GluLeuLeuAlaThrAlaAlaPheSerGlyProTrpLeuGlnLeuProSerSerLysArg : 249 ! ! !||| !|||!.!!:!|||||||||||| !! ||||||! !||| ! ! ThrSerThrAlaGluAlaValTyrSerGlyProTrpThrLeuLeuProMetSerAlaAsp 19463 : ACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGACACTTTTACCAATGAGCGCAGAC : 19522 250 : IleGluAsnLeuLysLysAspPheIleMetLeuIleMetArgSerTyrLysSerCysTyr : 269 !:!!! :!!!:!||||||!!.!!::!::!!|||||||||||| ! ! !!|||! ! GlyLysMetIleArgLysAspLeuMetLeuValIleMetArgSerSerValProCysCys 19523 : GGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCATGAGATCGAGCGTACCTTGTTGC : 19582 270 : IleSerGlyLeuGlyPhePheIleValSerLeuGluThrSerThrArg >>>> Targe : 286 :!:!!!!.! !|||||||||:!!|||||||||||||||! !||| !! LeuThrAlaArgGlyPhePheValValSerLeuGluThrTyrThrGly++ 19583 : TTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAACGTACACAGGGgt.......... : 19635 287 : t Intron 2 >>>> ValLeuThrThrAlaGlySerTyrPheThrLeuLeuGlnGluT : 300 223 bp ||||||!:!||||||!.!||||||||||||||||||:!!:!!! ++ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuLysGlnA 19636 : ...............agGTTTTAAGCACCGCAGCCTCATACTTTACGTTGCTGAAGCAAA : 19898 301 : hrGlnThrLysValAsp : 305 !..! !!!.!.!||| rgSerGluAsnAlaAsp 19899 : GATCAGAGAATGCCGAC : 19915 vulgar: gi|805825627|ref|XP_012152698.1| 140 305 . KQ414828.1 18219 19915 + 379 M 58 174 S 0 2 5 0 2 I 0 974 3 0 2 S 1 1 M 86 258 5 0 2 I 0 219 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 18220 19915 379 + . gene_id 4 ; sequence gi|805825627|ref|XP_012152698.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 18220 18395 . + . KQ414828.1 exonerate:protein2genome:local exon 18220 18395 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18396 18397 . + . intron_id 1 ; splice_site "TT" KQ414828.1 exonerate:protein2genome:local intron 18396 19373 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 19372 19373 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19374 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19374 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19915 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19915 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 18220 19915 379 + . alignment_id 4 ; Query gi|805825627|ref|XP_012152698.1| ; Align 18220 141 174 ; Align 19375 200 258 ; Align 19856 286 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825627|ref|XP_012152698.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 361 Query range: 87 -> 298 Target range: 10837 -> 13143 88 : SerValTyrMetValGlyArgThrTyrPheSerLeuAspAsnIleLeuCysIleIleAsn : 107 .!!:!!|||.!...!|||! ! !||||||!!!!!!|||||||||!!!||||||!!:!:! GlyLeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSer 10838 : GGACTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGC : 10895 108 : LeuHisLeuAlaGlyGlnPheArgMetLeuGlnTyrArgLeuSerGluLysTyrThrLys : 127 :!!||||||::!||||||||||||!!:|||||||||||||||!!!:!! !! ! ! ! ValHisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspVal 10896 : GTGCATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTA : 10955 128 : AsnGlnLysLysAsnAspGluSerArgAsn<-><->LeuLeuAspLeuAlaAsnAsnAla : 145 .!. ! :!!! !!::::::::::: ... ||| !|||! !.!!..!!..:!! GlnTyrGlnIleSerGluLysAsnMetGluSerValLeuGluAspCysThrArgArgSer 10956 : CAATATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGTAGATCT : 11015 146 : ThrAspIlePheLysSerCysIleArgGlnHisGlnAlaLeuValGluTyrCysGluGlu : 165 !!!:! !|||||||||! !:!!||||||||||||.!!|||:!!!!:|||! !|||:!! TyrGluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLys 11016 : TACGAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAG : 11075 166 : ValAspAlaValPheSerProCysValLeuIleGlnValLeuAlaPheSerIlePheIle : 185 :!!!!: !|||!:!!!! ! !:!!||| ||||||||| !||||||:!:!!.||| LeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIle 11076 : CTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATT : 11135 186 : CysLeuAspGlyTyrGlnMetLeuLeuValAspIlePhe{G} >>>> Target Intr : 199 |||||| !|||||||||!!:|||||||||..!|||! {.} 1311 bp CysLeuPheGlyTyrGlnIleLeuLeuValSerIleSer{A}-+ 11136 : TGCCTCTTTGGTTATCAGATATTATTGGTTAGTATTTCA{C}tt................ : 11180 200 : on 1 >>>> {lu}ArgGlnIleIlePheValPheHisPheLeuGlyThrValCysGln : 214 {.!}|||...||| |||:!!|||! !.!.! !|||.!!:!! ! ! +-{rg}ArgSerIle---PheMetPheLeuIleCysGlyAlaMetValLeu 11181 : .........aa{GG}CGCAGTATT---TTCATGTTCCTCATATGTGGCGCCATGGTTTTA : 12530 215 : LeuValMetPheSerTyrSerCysAspCysIleIleArgGluSerGluLeuLeuAlaThr : 234 ||| !!||||||!!!|||||||||:!! :!:|||..!:!!|||!!: !:!!||| ! LeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAlaPhe 12531 : TTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCTTTT : 12590 235 : AlaAlaPheSerGlyProTrpLeuGlnLeuProSerSerLysArgIleGluAsnLeuLys : 254 ||||||!:!|||!.!! !||| ! :!!|||! !!:!|||! ! !:!!!!.|||::! AlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeuArg 12591 : GCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTACGG : 12650 255 : LysAspPheIleMetLeuIleMetArgSerTyrLysSerCysTyrIleSerGlyLeuGly : 274 ! |||!!.||||||:!!||| !|||||| ::! !|||! !:!:!!!!.! !||| HisAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsnGly 12651 : CATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATGGA : 12710 275 : PhePheIleValSerLeuGluThrSerThr--{A} >>>> Target Intron 2 >> : 285 |||||| !|||||||||||||||! !|||##{.} 357 bp PhePheProValSerLeuGluThrTyrThr##{G}++ 12711 : TTTTTCCCTGTGTCCTTAGAAACTTATACTAC{G}gt....................... : 12748 286 : >> {rg}ValLeuThrThrAlaGlySerTyrPheThrLeuLeuGln : 298 {.!}:::|||!:!||||||!.!||||||||||||||||||::! +-{lu}IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArg 12749 : ..ac{ag}attttgAGTACCGCGGCGTCGTACTTCACATTATTGAGA : 13143 vulgar: gi|805825627|ref|XP_012152698.1| 87 298 . KQ414828.1 10837 13143 + 361 M 50 150 G 0 6 M 61 183 S 0 1 5 0 2 I 0 1307 3 0 2 S 1 2 M 3 9 G 1 0 M 81 243 F 0 2 S 0 1 5 0 2 I 0 353 3 0 2 S 1 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10838 13143 361 + . gene_id 5 ; sequence gi|805825627|ref|XP_012152698.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 10838 11177 . + . KQ414828.1 exonerate:protein2genome:local exon 10838 11177 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 11178 11179 . + . intron_id 1 ; splice_site "TT" KQ414828.1 exonerate:protein2genome:local intron 11178 12488 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12487 12488 . + . intron_id 0 ; splice_site "AA" KQ414828.1 exonerate:protein2genome:local cds 12489 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12489 12745 . + . insertions 0 ; deletions 1 ; frameshifts 2 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13102 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13101 13102 . + . intron_id 1 ; splice_site "ac" KQ414828.1 exonerate:protein2genome:local cds 13103 13143 . + . KQ414828.1 exonerate:protein2genome:local exon 13103 13143 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10838 13143 361 + . alignment_id 5 ; Query gi|805825627|ref|XP_012152698.1| ; Align 10838 88 150 ; Align 10994 138 183 ; Align 12491 200 9 ; Align 12500 204 243 ; Align 13105 286 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825627|ref|XP_012152698.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 331 Query range: 3 -> 134 Target range: 16300 -> 18186 4 : AsnPheLeuAsnAlaLysTyrAspAspPheGluLeuGlnIleLeuMetAspCysLysArg : 23 .!.||||||:!!||| ! |||||||||!:!||| !:!!||||||:!:! !|||:!!||| GluPheLeuHisAlaAspTyrAspAspTyrGluLysLysIleLeuLeuGlyCysGlnArg 16301 : GAATTCTTGCATGCAGATTACGACGACTACGAGAAAAAGATTTTGCTCGGTTGCCAACGT : 16358 24 : LysSerLysPhePheValCysIlePheIleLeuPheThrGluValThrValLeuSerTyr : 43 :!!!!!! ||||||||||||.!!|||! !|||||||||:!!! !||||||:!!|||||| GlnCysThrPhePheValCysPhePheThrLeuPheThrLysGlyThrValIleSerTyr 16359 : CAATGTACCTTCTTCGTTTGTTTCTTCACACTTTTCACTAAAGGAACTGTTATCTCGTAC : 16418 44 : AlaCysThrProLeuIle{G} >>>> Target Intron 1 >>>> {lu}AsnLeu : 52 ! !!.!|||||||||{!} 1386 bp { !}|||::: IleValAsnProLeuIle{A}++ ++{la}AsnIle 16419 : ATCGTTAATCCGCTTATT{G}gt.........................ag{ca}aatatt : 17831 53 : SerArgAsnGluSerAspLysAlaPheProPheArgMetTrpIleLysSerIleProLeu : 72 ...:::|||||||||!!:!:! !.!!||||||!.!||||||:!! !:!:!:|||||| GlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpVal---AsnLeuProLeu 17832 : ggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTC---AACTTGCCATTA : 17888 73 : GlnGluThrProTyrTyrGluIleCysTyrThrValGln >>>> Target Intron : 86 ..! !|||||||||||||||||| :::::::::||| 110 bp SerMetThrProTyrTyrGluIleThrPheSerLeuGln++ 17889 : TCAATGACGCCATATTACgaaataactttttcattaCAGgt................... : 17932 87 : 2 >>>> AlaValSerValTyrMetValGlyArgThrTyrPheSerLeuAspAsnIleL : 103 ..!:!!|||:!!||| :!!||| !!:!||||||! ...||||||...| ++ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPheL 17933 : ......aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgcttcgacaattttt : 18091 104 : euCysIleIleAsnLeuHisLeuAlaGlyGlnPheArgMetLeuGlnTyrArgLeuSerG : 123 ||||||||!!:||||||||| !||| !|||||||||:!:||||||||||||:!!:!!. euCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnTyrArgMetAlaA 18092 : tatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAATACCGAATGGCGA : 18151 124 : luLysTyrThrLysAsnGlnLysLysAsnAspGlu : 134 !.! ! ! ! !!!....|||:::... ||| snMetThrAspLeuLysAspLysGluArgLysGlu 18152 : ATATGACCGATTTAAAGGacaaagagaggaaagag : 18186 vulgar: gi|805825627|ref|XP_012152698.1| 3 134 . KQ414828.1 16300 18186 + 331 M 46 138 S 0 1 5 0 2 I 0 1382 3 0 2 S 1 2 M 17 51 G 1 0 M 17 51 5 0 2 I 0 106 3 0 2 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 16301 18186 331 + . gene_id 6 ; sequence gi|805825627|ref|XP_012152698.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 16301 16439 . + . KQ414828.1 exonerate:protein2genome:local exon 16301 16439 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 16440 16441 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 16440 17825 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 17824 17825 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 17826 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17826 17929 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18186 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18186 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 16301 18186 331 + . alignment_id 6 ; Query gi|805825627|ref|XP_012152698.1| ; Align 16301 4 138 ; Align 17828 51 51 ; Align 17879 69 51 ; Align 18040 86 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825627|ref|XP_012152698.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 216 Query range: 50 -> 197 Target range: 37459 -> 38210 51 : AsnLeuSerArgAsnGluSerAspLysAlaPheProPheArgMetTrpIleLysSerIle : 70 ||||||.!!!:!||||||||||||!:!! ! ! !!:! !||||||:!! ..!:!! AsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu---AspLeu 37460 : AATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC---GATCTA : 37514 71 : ProLeuGlnGluThrPro{T} >>>> Target Intron 1 >>>> {yr}TyrGlu : 79 ||||||... !||||||{!} 307 bp { !} ::: ProLeuSerIleThrPro{C}-+ ++{ys}AsnLys 37515 : CCATTATCCATAACAcca{t}at.........................ag{gt}aataaa : 37848 80 : IleCysTyrThrValGlnAlaValSerValTyrMetValGlyArgThrTyrPheSerLeu : 99 !..!||||||:!!|||||||||...|||.!! ! !|||.!!!!!... AsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPhe 37849 : aacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCttt : 37908 100 : AspAsnIleLeuCysIleIleAsnLeuHisLeuAlaGlyGlnPheArgMetLeuGlnTyr : 119 ||| |||... |||::: ||||||:!!|||||||||||||||!!:||||||||| AspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyr 37909 : gatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATAC : 37968 120 : ArgLeuSerGluLysTyrThrLysAsnGln<->LysLysAsnAspGluSerArgAsnLeu : 138 |||:!!:!!.!. !! ! !!:!:!! !|||!:!..!|||!:!! !!:! ! ArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSerThr 37969 : AGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACA : 38028 139 : LeuAspLeuAlaAsnAsnAlaThrAspIle<->PheLysSerCysIleArgGlnHisGln : 157 !!!:||| !:::.!. ! ! !!||| ||||||!:!||||||!:!||||||||| AspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGln 38029 : GATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAG : 38088 158 : AlaLeuValGluTyrCysGluGluValAspAlaValPheSerProCysValLeuIleGln : 177 ||||||:!!|||!:!|||! ! !:!!!!:! !||||||!!! ! !!.!||| !||| AlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGln 38089 : GCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAA : 38148 178 : ValLeuAlaPheSerIlePheIleCysLeuAspGlyTyrGlnMetLeuLeuValAspIle : 197 |||||| !|||||||||.!.||||||!!!! !! !|||||| |||||||||..!||| ValLeuMetPheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeuValSerIle 38149 : GTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGGTGAGTATC : 38208 vulgar: gi|805825627|ref|XP_012152698.1| 50 197 . KQ414828.1 37459 38210 + 216 M 17 51 G 1 0 M 8 24 S 0 1 5 0 2 I 0 303 3 0 2 S 1 2 M 52 156 G 0 3 M 19 57 G 0 3 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37460 38210 216 + . gene_id 7 ; sequence gi|805825627|ref|XP_012152698.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37460 37535 . + . KQ414828.1 exonerate:protein2genome:local exon 37460 37535 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 37536 37537 . + . intron_id 1 ; splice_site "at" KQ414828.1 exonerate:protein2genome:local intron 37536 37842 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37841 37842 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37843 38210 . + . KQ414828.1 exonerate:protein2genome:local exon 37843 38210 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37460 38210 216 + . alignment_id 7 ; Query gi|805825627|ref|XP_012152698.1| ; Align 37460 51 51 ; Align 37511 69 24 ; Align 37845 78 156 ; Align 38004 130 57 ; Align 38064 149 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825627|ref|XP_012152698.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 182 Query range: 197 -> 286 Target range: 28517 -> 28784 198 : PheGluArgGlnIleIlePheValPheHisPheLeuGlyThrValCysGlnLeuValMet : 217 |||||| !!!:::!! !!!.!.!! ! !! :!! ! !||| !!|||||| !||| PheGluTrpArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuTrpMet 28518 : TTTGAATGGCGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTATGGATG : 28575 218 : PheSerTyrSerCysAspCysIleIleArgGluSerGluLeuLeuAlaThrAlaAlaPhe : 237 |||!!!||||||||||||||||||! !! !|||||| ! !:!!||| !:!!!.!!:! PheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyr 28576 : TTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATAC : 28635 238 : SerGlyProTrpLeuGlnLeuProSerSerLysArgIleGluAsnLeuLysLysAspPhe : 257 :!!|||||||||:!!.!.||||||! ...||| ::: |||!:!||||||.!. AlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeu 28636 : GCTGGACCATGGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAAGATCTA : 28695 258 : IleMetLeuIleMetArgSerTyrLysSerCysTyrIleSerGlyLeuGlyPhePheIle : 277 !:!!||||||:!!|||:!! ::! !!! !! !:!:!!!!.!! !||||||||| ! GlnValLeuIleLeuArgAlaArgArgProSerSerLeuThrAlaCysGlyPhePheSer 28696 : CAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCT : 28755 278 : ValSerLeuGluThrSerThrArgVal : 286 :!!||||||||||||! !|||!:!||| IleSerLeuGluThrPheThrLysVal 28756 : ATATCTCTCGAAACCTTTACTAAGGTA : 28784 vulgar: gi|805825627|ref|XP_012152698.1| 197 286 . KQ414828.1 28517 28784 + 182 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28518 28784 182 + . gene_id 8 ; sequence gi|805825627|ref|XP_012152698.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28518 28784 . + . KQ414828.1 exonerate:protein2genome:local exon 28518 28784 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28518 28784 182 + . alignment_id 8 ; Query gi|805825627|ref|XP_012152698.1| ; Align 28518 198 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825627|ref|XP_012152698.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 179 Query range: 204 -> 286 Target range: 38514 -> 38760 205 : ValPheHisPheLeuGlyThrValCysGlnLeuValMetPheSerTyrSerCysAspCys : 224 :!!||| :!! ! !||| !!|||||| !||||||!!!||||||||||||||| MetPheAlaThrMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCys 38515 : ATGTTCGCAACGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGC : 38572 225 : IleIleArgGluSerGluLeuLeuAlaThrAlaAlaPheSerGlyProTrpLeuGlnLeu : 244 |||! !! !|||||| ! !:!!||| !:!!!.!!:!:!!|||||||||:!!.!.||| IleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeu 38573 : ATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTA : 38632 245 : ProSerSerLysArgIleGluAsnLeuLysLysAspPheIleMetLeuIleMetArgSer : 264 |||! ...||| ::: |||!:!||||||.!. !:!!||||||:!!|||:!! ProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAla 38633 : CCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCG : 38692 265 : TyrLysSerCysTyrIleSerGlyLeuGlyPhePheIleValSerLeuGluThrSerThr : 284 ::! !!! !! !:!:!!!!.!! !||||||||| !:!!||||||||||||! !||| ArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThr 38693 : AGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACT : 38752 285 : ArgVal : 286 !:!||| LysVal 38753 : AAGGTA : 38760 vulgar: gi|805825627|ref|XP_012152698.1| 204 286 . KQ414828.1 38514 38760 + 179 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38515 38760 179 + . gene_id 9 ; sequence gi|805825627|ref|XP_012152698.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38515 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38515 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38515 38760 179 + . alignment_id 9 ; Query gi|805825627|ref|XP_012152698.1| ; Align 38515 205 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825627|ref|XP_012152698.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 47 -> 90 Target range: 27339 -> 27465 48 : LeuIleGluAsnLeuSerArgAsnGluSerAspLysAlaPheProPheArgMetTrpIle : 67 :::::: ||||||.!!!:!||||||||||||!:!! ! ! !||| !||||||.!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPhe 27340 : attttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTC : 27397 68 : LysSerIleProLeuGlnGluThrProTyrTyrGluIleCysTyrThrValGlnAlaVal : 87 ..!:!!||||||...! !|||||||||||||||||| |||! !:!!|||!.!:!! ---AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeu 27398 : ---GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTA : 27454 88 : SerValTyr : 90 !!:!!!:! ProIlePhe 27455 : CCAATTTTC : 27465 vulgar: gi|805825627|ref|XP_012152698.1| 47 90 . KQ414828.1 27339 27465 + 100 M 20 60 G 1 0 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27340 27465 100 + . gene_id 10 ; sequence gi|805825627|ref|XP_012152698.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27340 27465 . + . KQ414828.1 exonerate:protein2genome:local exon 27340 27465 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 27340 27465 100 + . alignment_id 10 ; Query gi|805825627|ref|XP_012152698.1| ; Align 27340 48 60 ; Align 27400 69 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825623|ref|XP_012152696.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 853 Query range: 0 -> 329 Target range: 31105 -> 34313 1 : MetGluThrLysTyrSerThrAspIleAlaValArgLeuThrPhePheTyrLeuLysIle : 20 |||... !|||||| !! !|||:!!:!! !!||||||.!! !|||!:!||| ! :!! MetSerLeuLysTyrArgGlnAspValSerPheArgLeuAlaAsnPhePheLeuTyrVal 31106 : ATGAGCTTGAAATATCGTCAAGACGTTTCCTTTAGATTAGCCAACTTTTTTCTGTATGTT : 31163 21 : IleGlyPheTrpPheAlaArgSerArgLeuGlnLeuTrpPheArgHisLeuMetValIle : 40 :!!||||||||||||||| !!:!|||:!!:!! !|||||||||:!! ! !:!!:!: ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeu 31164 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCTGCGATTCTG : 31223 41 : TyrThrPheIleMetAsnMetPheThrMetTrpLeuGlnCysMetGlyIleTyrHisPhe : 60 ||||||.!!:!!! ! !.!.|||..!|||||||||||| ! |||:!!||| !! ! TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSer 31224 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGGCTTTATTTCTCC : 31283 61 : TrpGlyAspPheThrMetCysThrTyrIleLeuValAsnValSer{V} >>>> Targe : 76 ||||||:!!||| !:!: !:! ! :!:! !:!!!.. !! !!{ } 1 TrpGlyAsnPheGluVal---SerGluLeuSerLeuThrPheArg{P}++ 31284 : TGGGGAAACTTTGAAGTA---AGTGAGTTGTCGTTGACGTTTCGT{C}gt.......... : 31331 77 : t Intron 1 >>>> {al}AsnIleGlyLysAsnGluSerGluArgValLeuLeuPhe : 89 065 bp { !}|||:!!|||||||||||||||!!:|||! !! !:!!!:! ++{ro}AsnLeuGlyLysAsnGluSerAspArgGluHisIleTyr 31332 : ...............ag{ca}AATCTTGGAAAGAATGAATCTGATAGAGAACATATATAC : 32432 90 : HisMetTrpLeuAspLeuProValSerMetSerProTyrPheGluIleMetTyrValLeu : 109 !!||||||||||||||||||:!!|||:!:!!!||||||:::|||||| |||:!!:!! AspMetTrpLeuAspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIle 32433 : GATATGTGGCTCGATCTACCATTATCCGTAACAccatattatgaaattacttACATAATA : 32492 110 : Gln >>>> Target Intron 2 >>>> ValLeuSerLeuCysGlnCysAsnIleG : 120 ||| 307 bp !.!||||||:!!! !||| !...:!: Gln++ ++AlaLeuSerValTyrGlnValGlyValC 32493 : CAGgt.........................agGCTTTATCTGTGTACCAAGTTGGAGTGT : 32832 121 : lyPheThrCysPheAspAsnIlePheCysIleMetCysLeuHisAlaAlaGlyGlnPheA : 140 !!!:! !|||||||||||||||||| |||||||||||||||!.!||||||||||||| ysTyrLeuCysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheA 32833 : GTTACCTTTGCTttgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTC : 32892 141 : rgIleLeuGlnTyrArgLeuLysAsnMetArgGluMetAlaGlyIle<-><->GlnGluA : 158 |||||||||||||||||:!! |||:!! !! :!:::!! !||| ....!.| rgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerAsnA 32893 : GTATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAGAGCAATG : 32952 159 : spAsnLeuLysSerAlaSerTyrPheSerSerLysTyrPheMetValPheLysAsnCysV : 178 ||||| !!..!!!|||..!! !:!|||..!|||! !!:!!!: !||||||||||||: spAsnThrSerThrAlaGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysI 32953 : ATAATACAAGCACGGCTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCA : 33012 179 : alArgGlnHisGlnMetValIleAlaPheCysThrLeuPheGluGluValPheSerAlaI : 198 !!!:!||||||||| :!:||| |||||| :::..!||||||||||||!!!!.!| leGlnGlnHisGlnAlaLeuIleGluPheCysGluIleLeuGluGluValPheThrValI 33013 : TTCAACAACATCAGGCACTaattgaattttgtgaaatactCGAAGAGGTATTCACGGTAA : 33072 199 : leValLeuCysGlnValIleMetPheSerMetLeuValCysLeuLeuGlyTyrGlnLeuP : 218 |||||||| ! ||||||:!!|||||||||!!::!!:!!|||!!! !||||||:!!:!!. leValLeuGlyGlnValLeuMetPheSerIleIleIleCysPheAlaGlyTyrGluValL 33073 : TCGTACTCGGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTAC : 33132 219 : heLeu >>>> Target Intron 3 >>>> ValAspLeuAsnLeuProMetLeuVa : 228 !!||| 406 bp :!! ||| !!! ! !! !|| euLeu++ ++IleThrLeuProPheGluSerArgVa 33133 : TCCTGgt.........................agATAACGTTACCATTTGAATCGCGCGT : 33568 229 : lSerLeuIleSerPheIleSerAlaAsnLeuCysGlnLeuTrpValPheThrTyrSerCy : 248 |:!!!!!! !!!|||:!:! !.!!..!:!! !!|||||||||:!!|||||||||||||| lAlaPheThrCysPheLeuIleThrGlyValSerGlnLeuTrpMetPheThrTyrSerCy 33569 : TGCTTTCACGTGCTTCTTGATTACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTG : 33628 249 : sAspThrMetThrArgGluSerLeuAsnValGlyThrAlaMetTyrThrAlaProTrpLe : 268 |:!! !!!:|||! !||||||||||||:!!!.! !:!!:!!|||.!!!.!||||||:! sAsnCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIl 33629 : CAATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGAT : 33688 269 : uGlnLeuProThrAspLysPheGlyLysMetIleArgLysAspLeuGlnIleValIleMe : 288 !.!.||||||! |||||||||||||||::::!!|||||||||||||||:!::!!|||:! eAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLe 33689 : AAATTTACCAATggataaatttggaaaactgCTAAGAAAGGATTTACAAGTGCTCATCTT : 33748 289 : tArgSerArgArgGlyCysHisIleThrAlaCysGlyPhePheProIleSerLeuGluTh : 308 !|||:!!|||||| !! ! !:!:|||||||||||||||||| !!|||!!!|||||||| uArgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleThrLeuGluTh 33749 : GAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATAACTCTCGAAAC : 33808 309 : rTyrThrSer >>>> Target Intron 4 >>>> IleMetSerThrAlaMetSer : 318 |!:!|||!.! 440 bp ||||||||||||:!!|||||| rPheThrLys++ ++IleMetSerThrSerMetSer 33809 : CTTTACTAAGgt.........................agATCATGAGTACATCAATGTCG : 34278 319 : TyrPheThrLeuLeuLysGlyThrThrValAsp : 329 |||||||||||||||||| !!:!.!!! !||| TyrPheThrLeuLeuLysGlnSerAlaGluAsp 34279 : TATTTCACCCTACTAAAACAAAGTGCCGAGGAC : 34313 vulgar: gi|805825623|ref|XP_012152696.1| 0 329 . KQ414828.1 31105 34313 + 853 M 66 198 G 1 0 M 8 24 S 0 1 5 0 2 I 0 1061 3 0 2 S 1 2 M 34 102 5 0 2 I 0 303 3 0 2 M 45 135 G 0 6 M 64 192 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31106 34313 853 + . gene_id 1 ; sequence gi|805825623|ref|XP_012152696.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 31106 31328 . + . KQ414828.1 exonerate:protein2genome:local exon 31106 31328 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 31329 31330 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 31329 32393 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32392 32393 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 32394 32497 . + . KQ414828.1 exonerate:protein2genome:local exon 32394 32497 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32498 32499 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32498 32804 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 32803 32804 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32805 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32805 33137 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 4 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34313 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34313 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31106 34313 853 + . alignment_id 1 ; Query gi|805825623|ref|XP_012152696.1| ; Align 31106 1 198 ; Align 31304 68 24 ; Align 32396 77 102 ; Align 32805 111 135 ; Align 32946 156 192 ; Align 33544 220 276 ; Align 34260 312 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825623|ref|XP_012152696.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 792 Query range: 0 -> 324 Target range: 21030 -> 24178 1 : MetGluThrLysTyrSerThrAspIleAlaValArgLeuThrPhePheTyrLeuLysIle : 20 |||... !|||||| !! !|||:!!:!!|||||||||.!! !||||||||| ! :!! MetSerLeuLysTyrArgGlnAspValSerValArgLeuAlaAsnPheTyrLeuTyrVal 21031 : ATGAGCTTGAAATATCGCCAAGACGTTTCCGTTAGATTAGCCAATTTTTATCTGTATGTC : 21088 21 : IleGlyPheTrpPheAlaArgSerArgLeuGlnLeuTrpPheArgHisLeuMetValIle : 40 :!!||||||||||||||| !!:!|||:!!:!! !|||||| !!:!! ! !:!!:!: ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheGlyAsnAlaAlaIleLeu 21089 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCGGAAACGCGGCGATTCTG : 21148 41 : TyrThrPheIleMetAsnMetPheThrMetTrpLeuGlnCysMetGlyIleTyrHisPhe : 60 ||||||.!!:!!! ! !.!.|||..!|||||||||||| ! |||:!!||| !! ! TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSer 21149 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGACTTTATTTCTCC : 21208 61 : TrpGlyAspPheThr >>>> Target Intron 1 >>>> MetCysThrTyrIleL : 71 ||||||:!!||| ! 1064 bp ! !!.. . TrpGlyAsnPheGlu++ ++***PheAsnGlyAsnP 21209 : TGGGGAAACTTTGAAgt.........................agTAATTTAatgggaatt : 22305 72 : euValAsnValSerValAsnIleGlyLysAsnGluSerGluArgValLeuLeuPheHisM : 91 ..::: ...!:!:!!...! ..!:!!::!!!:!!!|||!.!:!! !:! !!| heIleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIle------TyrAspM 22306 : ttattttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATA------TACGATA : 22359 92 : etTrpLeuAspLeuProValSerMetSerProTyrPheGluIleMetTyrValLeuGln : 111 |||||||||||||||||:!!|||:!:!!!||||||:::|||||| |||:!!:!!||| etTrpLeuAspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGln+ 22360 : TGTGGCTCGATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGg : 22419 112 : >>>> Target Intron 2 >>>> ValLeuSerLeuCysGlnCysAsnIleGlyPh : 121 307 bp !.!||||||:!!! !||| !!:! !!!: + ++AlaLeuSerValTyrGlnValSerAlaCysTy 22420 : t.........................agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTA : 22756 122 : eThrCysPheAspAsnIlePheCysIleMetCysLeuHisAlaAlaGlyGlnPheArgIl : 141 ! !||||||||| |||||| |||:::|||||||||!.!||||||||||||||||| rLeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIl 22757 : CCTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTAT : 22816 142 : eLeuGlnTyrArgLeuLysAsnMetArgGluMetAlaGlyIle<-><->GlnGluAspAs : 159 |||||||||||||:!! |||:!! !! :!:::!! !||| ......!!:|| eLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluAs 22817 : ACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAA : 22876 160 : nLeuLysSerAlaSerTyrPheSerSerLysTyrPheMetValPheLysAsnCysValAr : 179 |! !!..!!!! !..!! !:!|||..!|||! !!:!!!: !||||||||||||:!!!: nProSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGl 22877 : TCCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCA : 22936 180 : gGlnHisGlnMetValIleAlaPheCysThrLeuPheGluGluValPheSerAlaIleVa : 199 !||||||||| :!!|||! !||||||.!! !.!!||||||||||||!!!!.!||||| nGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleVa 22937 : ACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGT : 22996 200 : lLeuCysGlnValIleMetPheSerMetLeuValCysLeuLeuGlyTyrGlnLeuPheLe : 219 |||| ! ||||||:!!|||! !|||!!:|||:!!|||!!!:!!|||||||||:!!.!!|| lLeuGlyGlnValLeuMetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLe 22997 : ACTCGGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCT : 23056 220 : u >>>> Target Intron 3 >>>> ValAspLeuAsnLeuProMetLeuValSer : 229 | 492 bp :!! ! |||:::!!! ! !! !|||:!! u++ ++IleLysLeuSerPheGluSerArgValAla 23057 : Ggt.........................agATAAAGTTATCATTTGAATCGCGCGTTGCT : 23578 230 : LeuIleSerPheIleSerAlaAsnLeuCysGlnLeuTrpValPheThrTyrSerCysAsp : 249 !!! !!!|||:!:! ! !..!:!! !!|||||||||:!!|||||||||||||||||| PheAlaCysPheLeuMetMetGlyMetSerGlnLeuTrpMetPheThrTyrSerCysAsp 23579 : TTCGCGTGCTTCTTGATGATGGGCATGAGTCAACTATGGATGTTCACGTATAGTTGCGAT : 23638 250 : ThrMetThrArgGluSerLeuAsnValGlyThrAlaMetTyrThrAlaProTrpLeuGln : 269 !!!:|||! !||||||||||||:!!!.! !:!!:!!|||.!!!.!||||||:!!.!. CysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsn 23639 : TGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAAT : 23698 270 : LeuProThrAspLysPheGlyLysMetIleArgLysAspLeuGlnIleValIleMetArg : 289 ||||||! !|||||||||||||||:!!:!!||||||!!:||||||!!::!!|||:!!||| LeuProMetAspLysPheGlyLysLeuLeuArgLysGluLeuGlnMetLeuIleLeuArg 23699 : TTACCAATGGACAAATTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGG : 23758 290 : SerArgArgGlyCysHisIleThrAlaCysGlyPhePheProIleSerLeuGluThrTyr : 309 :!!|||||| !! ! !:!:|||||||||||||||||| !!|||||||||||||||!:! AlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPhe 23759 : GCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTT : 23818 310 : ThrSer >>>> Target Intron 4 >>>> IleMetSerThrAlaMetSerTyrP : 320 |||!.! 313 bp ||||||||||||:!!|||||||||| ThrLys++ ++IleMetSerThrSerMetSerTyrP 23819 : ACTAAGgt.........................agATCATGAGTACATCAATGTCGTATT : 24164 321 : heThrLeuLeuLys : 324 |||||||||||||| heThrLeuLeuLys 24165 : TCACATTATTAAAA : 24178 vulgar: gi|805825623|ref|XP_012152696.1| 0 324 . KQ414828.1 21030 24178 + 792 M 65 195 5 0 2 I 0 1060 3 0 2 M 21 63 G 2 0 M 22 66 5 0 2 I 0 303 3 0 2 M 45 135 G 0 6 M 64 192 5 0 2 I 0 488 3 0 2 M 92 276 5 0 2 I 0 309 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21031 24178 792 + . gene_id 2 ; sequence gi|805825623|ref|XP_012152696.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 21031 21225 . + . KQ414828.1 exonerate:protein2genome:local exon 21031 21225 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 21226 21227 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 21226 22289 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22288 22289 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22290 22418 . + . KQ414828.1 exonerate:protein2genome:local exon 22290 22418 . + . insertions 0 ; deletions 2 KQ414828.1 exonerate:protein2genome:local splice5 22419 22420 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22419 22725 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 23058 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23059 23060 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23059 23550 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 23549 23550 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 23551 23826 . + . KQ414828.1 exonerate:protein2genome:local exon 23551 23826 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23827 23828 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23827 24139 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 24138 24139 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 24140 24178 . + . KQ414828.1 exonerate:protein2genome:local exon 24140 24178 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21031 24178 792 + . alignment_id 2 ; Query gi|805825623|ref|XP_012152696.1| ; Align 21031 1 195 ; Align 22290 66 63 ; Align 22353 89 66 ; Align 22726 111 135 ; Align 22867 156 192 ; Align 23551 220 276 ; Align 24140 312 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825623|ref|XP_012152696.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 688 Query range: 2 -> 324 Target range: 712 -> 6456 3 : ThrLysTyrSerThrAspIleAlaValArgLeuThrPhePheTyrLeuLysIleIleGlyPh : 23 |||..! !!!:!! !||||||||||||! !:!!||| !||||||||||||||||||||||| ThrSerAsnAsnArgAspIleAlaValThrValThrAlaPheTyrLeuLysIleIleGlyPh 713 : ACTTCGAATAACAGGGACATAGCGGTGACCGTTACGGCTTTCTACTTGAAAATTATCGGCTT : 773 24 : eTrpPheAlaArgSerArgLeuGlnLeuTrpPheArgHisLeuMetValIleTyrThrPheI : 44 ||||!!.||| !!!! ! !:!! ||| ... !! !!:!|||.!.. eTrpLeuAlaAspThrTyrGluGluLysArgArgArgLysPheAlaGlnAsnPheThrIleP 774 : CTGGTTAGCTGACACTTACGAGGAGAAacgtcgaagaaaattcgcgcAGAATTTCACGATAT : 836 45 : leMetAsnMetPheThrMetTrpLeuGlnCysMetGlyIleTyrHisPheTrpGlyAspPhe : 64 !!||| :!!! !.!!:!! :!!:!! ! !! !||||||:!! !|||||||||||| heMetLeuValCysAlaValValIleGluThrArgAspIleTyrTyrThrTrpGlyAspPhe 837 : TTATGCTGGTGTGCGCTGTGGTAATTGAGACGAGGGATATCTATTACACCTGGGGTGATTTC : 896 65 : ThrMetCysThrTyrIleLeuValAsnValSerVal{As} >>>> Target Intron 1 : 77 !:!:!: !!! ! ! !:!!:!!.!. ! ! !{!:} 1948 bp SerValSerIleValSerIleIleGluHisHisSer{Se}+- 897 : AGCGTAAGTATAGTTTCAATTATCGAACACCATTCG{AG}ga.................... : 939 78 : >>>> {n}IleGlyLysAsnGluSerGluArgValLeuLeuPheHisMetTrpLeuAspL : 95 {!}||||||||||||||||||!!:|||:!!|||:!! !!:!!.!.|||:!!|||| ++{r}IleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspL 940 : .....ag{t}attggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACC : 2937 96 : euProValSerMetSerProTyrPheGluIleMetTyrValLeuGln >>>> Target I : 111 |||||:!!!!!!!:!!!||||||:::||||||::::::...:!!||| 406 euProIleThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2938 : TGCCGATAACCATCACACCATactatgaaatattatttacgaTACAGgt............. : 2987 112 : ntron 2 >>>> ValLeuSerLeuCysGlnCysAsnIleGlyPheThrCysPheAspAsn : 126 bp :!!!!!! !:!! ! ! !|||.!!!:! !|||.!!|||||| ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsn 2988 : ............agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAAT : 3436 127 : IlePheCysIleMetCysLeuHisAlaAlaGlyGlnPheArgIleLeuGlnTyrArgLeuLy : 147 .!!.!.|||!!:!!: !||||||.!!||| !|||||||||||||||||||||||||||.. PheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSe 3437 : TTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTC : 3499 148 : sAsnMetArgGluMetAlaGlyIleGlnGluAspAsnLeuLysSerAlaSerTyrPheSerS : 168 !|||:!! !!! !! ! !...::: |||...... !!! ! !|||. rAsnValCysGlyAlaAsnGluArgSerAspLysIleSerLysLysThrProSerAsnSerA 3500 : GAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTCGG : 3562 169 : erLysTyrPheMetValPheLysAsnCysValArgGlnHisGlnMetValIleAlaPheCys : 188 .!:!!! !!:! !||||||||||||:!!!:!||||||||| :!!|||! !!:!||| spGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCys 3563 : ACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGT : 3622 189 : ThrLeuPheGluGluValPheSerAlaIleValLeuCysGlnValIleMetPheSerMetLe : 209 !.! !.!!:!!|||||||||.!! !.!!||||||...||||||:!::!:||||||:!!|| AsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeuLe 3623 : AACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTT : 3685 210 : uValCysLeuLeuGlyTyrGlnLeuPheLeu >>>> Target Intron 3 >>>> Va : 220 |:!!|||||| !|||||| ||| ! :!! 457 bp ! uMetCysLeuAspGlyTyr---LeuValMet++ ++Gl 3686 : AATGTGCCTCGATGGATAT---TTGGTGATGgt.........................agGA : 4172 221 : lAspLeuAsnLeuProMetLeuValSerLeuIleSerPheIleSerAlaAsnLeuCysGlnL : 241 !||| ! !:!! !..!! !:!!!!!!!!:!:! ! !:!!!!!!.! !|||||||||| uAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnL 4173 : AGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAAC : 4235 242 : euTrpValPheThrTyrSerCysAspThrMetThrArgGluSerLeuAsnValGlyThrAla : 261 ||! !:!!|||||||||||||||||| !:!!! !||||||||||||||||||!.!!.!||| euLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAla 4236 : TGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCT : 4295 262 : MetTyrThrAlaProTrpLeuGlnLeuProThrAspLysPheGlyLysMetIleArgLysAs : 282 !!:||| !..! !!|||:!!!!.||||||! !|||!:!! !|||::!|||:!:|||||||| IleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAs 4296 : ATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGA : 4358 283 : pLeuGlnIleValIleMetArgSerArgArgGlyCysHisIleThrAlaCysGlyPhePheP : 303 |||| !.!!|||||| ||||||||| ! !||| !:!!||||||||||||||||||| pLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePheP 4359 : TTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCC : 4421 304 : roIleSerLeuGluThrTyrThrSer >>>> Target Intron 4 >>>> IleMetS : 314 ||:!:||||||||||||||||||||| 1970 bp :!!!!:| roValSerLeuGluThrTyrThrSer++ ++ValIleS 4422 : CTGTGTCACTGGAAACGTACACTTCGgt.........................agGTTATAA : 6424 315 : erThrAlaMetSerTyrPheThrLeuLeuLys : 324 ||||||||:!!||||||||||||||||||!:! erThrAlaValSerTyrPheThrLeuLeuArg 6425 : GTACAGCAGTGTCGTACTTCACACTGTTAAGG : 6456 vulgar: gi|805825623|ref|XP_012152696.1| 2 324 . KQ414828.1 712 6456 + 688 M 74 222 S 0 2 5 0 2 I 0 1944 3 0 2 S 1 1 M 33 99 5 0 2 I 0 402 3 0 2 M 105 315 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 713 6456 688 + . gene_id 3 ; sequence gi|805825623|ref|XP_012152696.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 713 936 . + . KQ414828.1 exonerate:protein2genome:local exon 713 936 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 937 938 . + . intron_id 1 ; splice_site "GA" KQ414828.1 exonerate:protein2genome:local intron 937 2884 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 2883 2884 . + . intron_id 0 ; splice_site "Ag" KQ414828.1 exonerate:protein2genome:local cds 2885 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2885 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 2 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6456 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6456 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 713 6456 688 + . alignment_id 3 ; Query gi|805825623|ref|XP_012152696.1| ; Align 713 3 222 ; Align 2886 78 99 ; Align 3391 111 315 ; Align 3706 217 9 ; Align 4172 220 276 ; Align 6418 312 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825623|ref|XP_012152696.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 589 Query range: 73 -> 324 Target range: 17818 -> 19894 74 : ValSerValAsnIleGlyLysAsnGluSerGluArgValLeuLeuPheHisMetTrpLeu : 93 :!!! ...|||||||||||||||||||||||||||:!!|||! !|||:!!||||||:!! IleLeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpVal 17819 : ATTTTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTC : 17876 94 : AspLeuProValSerMetSerProTyrPheGluIleMetTyrValLeuGln >>>> Ta : 111 :!!||||||:!!||||||!!!||||||!:!|||||| ::: |||||| AsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln++ 17877 : AACTTGCCATTATCAATGACGCCATATTACgaaataactttttcattaCAGgt....... : 17932 112 : rget Intron 1 >>>> ValLeuSerLeuCysGlnCysAsnIleGlyPheThrCysP : 124 110 bp ||||||||||||! !!!. !..!:!:.!!!:! !|||| ++ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysP 17933 : ..................aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgct : 18079 125 : heAspAsnIlePheCysIleMetCysLeuHisAlaAlaGlyGlnPheArgIleLeuGlnT : 144 ||||||||......||||||||| !|||||||||||| !|||||||||:!!||||||| heAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnT 18080 : tcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAAT : 18139 145 : yrArgLeuLysAsnMetArgGluMetAlaGlyIleGln<-><->GluAspAsnLeuLys< : 162 |||||:!! !||||||! !!!::!: !! ::: ||| |||:::||| yrArgMetAlaAsnMetThrAspLeuLysAspLysGluArgLysGluArgAsnMetLysT 18140 : ACCGAATGGCGAATATGACCGATTTAAAGGacaaagagaggaaagagagaaatatgaAGA : 18199 163 : -><-><->SerAlaSerTyrPheSerSerLysTyrPheMetValPheLysAsnCysValA : 179 |||:!!:!!! !|||:!!!!!:!!! !!:!! |||.!!|||:!!! !:!!| hrSerValSerSerAlaCysPheAlaThrGluCysTyrAsnValLeuLysAspTyrIleA 18200 : CAAGTGTGAGTTCGGCGTGCTTTGCAACAGAATGTTACAACGTTCTCAAAGATTATATCA : 18259 180 : rgGlnHisGlnMetValIleAlaPheCysThrLeuPheGluGluValPheSerAlaIleV : 199 |||||||||||! :!!||||||!:!|||!.! !.!!|||:!!||||||!:! !|||| rgGlnHisGlnAsnLeuIleAlaTyrCysAsnLysLeuGluLysValPheAsnIleIleV 18260 : GACAGCATCAGAACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGTTCAATATCATTG : 18319 200 : alLeuCysGlnValIleMetPheSerMetLeuValCysLeuLeuGlyTyrGlnLeuPheL : 219 ||||| ! |||:!!:!!|||||||||||||||:!!|||||| !|||!:!|||:!!.!!: alLeuGlyGlnLeuLeuMetPheSerMetLeuIleCysLeuAspGlyPheGlnIleLeuM 18320 : TTCTGGGGCAATTGTTAATGTTCAGCATGTTGATCTGTCTCGATGGATTTCAGATACTTA : 18379 220 : eu >>>> Target Intron 2 >>>> ValAspLeuAsnLeuProMetLeuValSe : 229 !! 975 bp !.!:!! ! ! ! !! ! !:!!! et++ ++AlaAsnThrProThrArgThrArgLeuIl 18380 : TGgt.........................agGCAAATACACCTACCAGAACCCGACTGAT : 19384 230 : rLeuIleSerPheIleSerAlaAsnLeuCysGlnLeuTrpValPheThrTyrSerCysAs : 249 !!!!|||! ! !|||.!!||| !:!!||||||||| !:!!||||||||||||||||| ePheIlePheHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSerCysAs 19385 : TTTCATCTTTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGCTGCGA : 19444 250 : pThrMetThrArgGluSerLeuAsnValGlyThrAlaMetTyrThrAlaProTrpLeuGl : 269 | !!!:! !||||||||| !!:!..!!.! !|||:!!|||!:!!.!|||||| !! pCysIleIleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyProTrpThrLe 19445 : CTGCATCATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGACACT : 19504 270 : nLeuProThrAspLysPheGlyLysMetIleArgLysAspLeuGlnIleValIleMetAr : 289 ||||||! !..! ! !||||||||||||||||||||||||..!:!!||||||||||| uLeuProMetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuValIleMetAr 19505 : TTTACCAATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCATGAG : 19564 290 : gSerArgArgGlyCysHisIleThrAlaCysGlyPhePheProIleSerLeuGluThrTy : 309 ||||!!! ! !||| !:!:|||||| ! ||||||||| !:!:|||||||||||||| gSerSerValProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGluThrTy 19565 : ATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAACGTA : 19624 310 : rThrSer >>>> Target Intron 3 >>>> IleMetSerThrAlaMetSerTyr : 319 ||||.!! 223 bp :!!:!:||||||||| |||||| rThrGly++ ++ValLeuSerThrAlaAlaSerTyr 19625 : CACAGGGgt.........................agGTTTTAAGCACCGCAGCCTCATAC : 19877 320 : PheThrLeuLeuLys : 324 ||||||||||||||| PheThrLeuLeuLys 19878 : TTTACGTTGCTGAAG : 19894 vulgar: gi|805825623|ref|XP_012152696.1| 73 324 . KQ414828.1 17818 19894 + 589 M 37 111 5 0 2 I 0 106 3 0 2 M 46 138 G 0 6 M 5 15 G 0 9 M 58 174 5 0 2 I 0 971 3 0 2 M 92 276 5 0 2 I 0 219 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17819 19894 589 + . gene_id 4 ; sequence gi|805825623|ref|XP_012152696.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17819 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17819 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18381 . + . insertions 15 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19894 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19894 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17819 19894 589 + . alignment_id 4 ; Query gi|805825623|ref|XP_012152696.1| ; Align 17819 74 111 ; Align 18040 111 138 ; Align 18184 157 15 ; Align 18208 162 174 ; Align 19357 220 276 ; Align 19856 312 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825623|ref|XP_012152696.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 402 Query range: 117 -> 330 Target range: 10852 -> 13161 118 : AsnIleGlyPheThrCysPheAspAsnIlePheCysIleMetCysLeuHisAlaAlaGly : 137 ...||| !!!:! !||||||||||||||||||||||||||| !!:!!||| !::!||| GlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerValHisLeuSerGly 10853 : GGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTGCATTTGAGTGGC : 10910 138 : GlnPheArgIleLeuGlnTyrArgLeuLysAsnMetArgGluMetAla<->GlyIleGln : 156 |||||||||||||||||||||||||||! !!!.:!! !!!::!: ! !|||... GlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGlnTyrGlnIleSer 10911 : CAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAATATCAGATAAgc : 10970 157 : GluAspAsnLeuLysSerAla<->SerTyrPheSerSerLysTyrPheMetValPheLys : 175 ||| |||::::::|||!.! ..! !!! !!!! !!!:!! !!:! ! !|||||| GluLysAsnMetGluSerValLeuGluAspCysThrArgArgSerTyrGluLysPheLys 10971 : gagaaaaatatggaatcTGTATTGGAAGACTGTACACGTAGATCTTACGAGAAATTTAAG : 11030 176 : AsnCysValArgGlnHisGlnMetValIleAlaPheCysThrLeuPheGluGluValPhe : 195 !:!! !|||||||||||||||! !:!!|||! !!:!! ! ! !.!!|||.!.|||!:! SerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLysLeuGluHisValTyr 11031 : AGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAGCTTGAACACGTTTAC : 11090 196 : SerAlaIleValLeuCysGlnValIleMetPheSerMetLeuValCysLeuLeuGlyTyr : 215 !!! !|||:!!||| ! ||||||:!!:!!||||||:!!|||:!!||||||!!!|||||| ThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIleCysLeuPheGlyTyr 11091 : ACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATTTGCCTCTTTGGTTAT : 11150 216 : GlnLeuPheLeuValAspLeuAsnLeuProMet{Le} >>>> Target Intron 1 : 227 |||:!!!!.||||||..!:!!:::|||||| { } 1302 bp GlnIleLeuLeuValSerIleSerLeuProPro{Th}-- 11151 : CAGATATTATTGGTTAGTATTTCACTTCCTCCA{AC}tg..................... : 11190 228 : >>>> {u}ValSerLeuIleSerPhe<->IleSerAlaAsnLeuCysGlnLeuTrpVal : 243 {!} !|||:!!.!!! !||| |||!!!!.! !:!! ! !|||!:::!! ++{r}ArgSerIlePheMetPheLeuIleCysGlyAlaMetValLeuLeuPheMet 11191 : ....ag{G}CGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTTTTATTGTTTATG : 12539 244 : PheThrTyrSerCysAspThrMetThrArgGluSerLeuAsnValGlyThrAlaMetTyr : 263 |||||||||||||||:!!! !:!!! !..!:!!||| !|||:!!!.! !||| !||| PheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAlaPheAlaAlaTyr 12540 : TTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCTTTTGCGGCGTAT : 12599 264 : ThrAlaProTrpLeuGlnLeuProThrAspLysPheGlyLysMetIleArgLysAspLeu : 283 :!!|||! !||| ! :!!|||! !:!!||| !||||||! !:!!||| ! |||||| SerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeuArgHisAspLeu 12600 : TCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTACGGCATGATTTG : 12659 284 : GlnIleValIleMetArgSerArgArgGlyCysHisIleThrAlaCysGlyPhePhePro : 303 !!!:|||||| !||||||||||||! !||| !:!:|||||| !|||||||||||| IleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePhePro 12660 : ATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATGGATTTTTCCCT : 12719 304 : IleSerLeuGluThrTyrThr--{S} >>>> Target Intron 2 >>>> {er}I : 312 :!:||||||||||||||||||##{.} 357 bp {.!}| ValSerLeuGluThrTyrThr##{G}++ +-{lu}I 12720 : GTGTCCTTAGAAACTTATACTAC{G}gt.........................ac{ag}a : 13105 313 : leMetSerThrAlaMetSerTyrPheThrLeuLeuLysGlyThrThrValAspVal : 330 ||:::||||||||| !||||||||||||||||||!:!..!!.!..!! !|||||| leLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnValGluAspVal 13106 : ttttgAGTACCGCGGCGTCGTACTTCACATTATTGAGAAATAACGTAGAAGATGTA : 13161 vulgar: gi|805825623|ref|XP_012152696.1| 117 330 . KQ414828.1 10852 13161 + 402 M 36 108 G 0 3 M 10 30 G 0 3 M 63 189 S 0 2 5 0 2 I 0 1298 3 0 2 S 1 1 M 6 18 G 0 3 M 77 231 F 0 2 S 0 1 5 0 2 I 0 353 3 0 2 S 1 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10853 13161 402 + . gene_id 5 ; sequence gi|805825623|ref|XP_012152696.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 10853 11187 . + . KQ414828.1 exonerate:protein2genome:local exon 10853 11187 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 11188 11189 . + . intron_id 1 ; splice_site "TG" KQ414828.1 exonerate:protein2genome:local intron 11188 12489 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12488 12489 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 12490 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12490 12745 . + . insertions 3 ; deletions 0 ; frameshifts 2 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13102 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13101 13102 . + . intron_id 1 ; splice_site "ac" KQ414828.1 exonerate:protein2genome:local cds 13103 13161 . + . KQ414828.1 exonerate:protein2genome:local exon 13103 13161 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10853 13161 402 + . alignment_id 5 ; Query gi|805825623|ref|XP_012152696.1| ; Align 10853 118 108 ; Align 10964 154 30 ; Align 10997 164 189 ; Align 12491 228 18 ; Align 12512 234 231 ; Align 13105 312 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825623|ref|XP_012152696.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 282 Query range: 221 -> 312 Target range: 28511 -> 28784 222 : LeuAsnLeuProMetLeuValSerLeuIleSerPheIleSerAlaAsnLeuCysGlnLeu : 241 |||:::!!! ! !! !|||:!!||| !!!||| ! !.!!..!:!! !!|||||| LeuSerPheGluTrpArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeu 28512 : TTATCATTTGAATGGCGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTA : 28569 242 : TrpValPheThrTyrSerCysAspThrMetThrArgGluSerLeuAsnValGlyThrAla : 261 |||:!!|||||||||||||||||| !!!:|||! !||||||||||||:!!!.! !:!! TrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSer 28570 : TGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCT : 28629 262 : MetTyrThrAlaProTrpLeuGlnLeuProThrAspLysPheGlyLysMetIleArgLys : 281 :!:|||.!!!.!||||||:!!.!.||||||! |||||||||||||||::::!!|||||| ValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLys 28630 : GTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAA : 28689 282 : AspLeuGlnIleValIleMetArgSerArgArgGlyCysHisIleThrAlaCysGlyPhe : 301 |||||||||:!::!!|||:!!|||:!!|||||| !! ! !:!:||||||||||||||| AspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThrAlaCysGlyPhe 28690 : GATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGATTC : 28749 302 : PheProIleSerLeuGluThrTyrThrSerIle : 312 ||| !!|||||||||||||||!:!|||!.!:!! PheSerIleSerLeuGluThrPheThrLysVal 28750 : TTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 28784 vulgar: gi|805825623|ref|XP_012152696.1| 221 312 . KQ414828.1 28511 28784 + 282 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28512 28784 282 + . gene_id 6 ; sequence gi|805825623|ref|XP_012152696.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28512 28784 . + . KQ414828.1 exonerate:protein2genome:local exon 28512 28784 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28512 28784 282 + . alignment_id 6 ; Query gi|805825623|ref|XP_012152696.1| ; Align 28512 222 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825623|ref|XP_012152696.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 272 Query range: 97 -> 222 Target range: 37829 -> 38210 98 : SerMetSerProTyrPheGluIleMetTyrValLeuGlnValLeuSerLeuCysGlnCys : 117 ..!|||! !||| ::: ::: ::! !|||!.!||||||:!!! !||| ! GlnMetIleProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnVal 37830 : CAAATGATTCCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTT : 37887 118 : AsnIleGlyPheThrCysPheAspAsnIlePheCysIleMetCysLeuHisAlaAlaGly : 137 !:! !!!:! !||||||||| |||||| |||:::|||||||||!.!|||||| SerAlaCysTyrLeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGly 37888 : AGCGCGTGTTACCTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGT : 37947 138 : GlnPheArgIleLeuGlnTyrArgLeuLysAsnMetArgGluMetAlaGlyIle<-><-> : 156 ||||||||||||||||||||||||:!! |||:!! !! :!:::!! !||| GlnPheArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLys 37948 : CAGTTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAA : 38007 157 : GlnGluAspAsnLeuLysSerAlaSerTyrPheSerSerLysTyrPheMetValPheLys : 175 ......!!:|||! !!..!!!! !..!! !:!|||..!|||! !!:!!!: !|||||| SerSerGluAsnProSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLys 38008 : AGCAGTGAAAATCCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAG : 38067 176 : AsnCysValArgGlnHisGlnMetValIleAlaPheCysThrLeuPheGluGluValPhe : 195 ||||||:!!!:!||||||||| :!!|||! !||||||.!! !.!!|||||||||||| AsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPhe 38068 : AATTGCATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTC : 38127 196 : SerAlaIleValLeuCysGlnValIleMetPheSerMetLeuValCysLeuLeuGlyTyr : 215 !!!!.!|||!.!||| ! ||||||:!!|||||||||!!:|||:!!|||!!!:!!! !||| ThrValIleAlaLeuGlyGlnValLeuMetPheSerIleLeuIleCysPheValValTyr 38128 : ACGGTAATTGCACTCGGACAAGTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTAT : 38187 216 : GlnLeuPheLeuValAspLeu : 222 ||| !.!!||||||..!:!! GlnAlaLeuLeuValSerIle 38188 : CAAGCACTCCTGGTGAGTATC : 38210 vulgar: gi|805825623|ref|XP_012152696.1| 97 222 . KQ414828.1 37829 38210 + 272 M 58 174 G 0 6 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37830 38210 272 + . gene_id 7 ; sequence gi|805825623|ref|XP_012152696.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37830 38210 . + . KQ414828.1 exonerate:protein2genome:local exon 37830 38210 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37830 38210 272 + . alignment_id 7 ; Query gi|805825623|ref|XP_012152696.1| ; Align 37830 98 174 ; Align 38010 156 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825623|ref|XP_012152696.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 271 Query range: 235 -> 312 Target range: 38529 -> 38760 236 : AlaAsnLeuCysGlnLeuTrpValPheThrTyrSerCysAspThrMetThrArgGluSer : 255 .!!..!:!! !!|||||||||:!!|||||||||||||||||| !!!:|||! !|||||| ThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSer 38530 : ACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGC : 38587 256 : LeuAsnValGlyThrAlaMetTyrThrAlaProTrpLeuGlnLeuProThrAspLysPhe : 275 ||||||:!!!.! !:!!:!:|||.!!!.!||||||:!!.!.||||||! ||||||||| LeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPhe 38588 : CTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaattt : 38647 276 : GlyLysMetIleArgLysAspLeuGlnIleValIleMetArgSerArgArgGlyCysHis : 295 ||||||::::!!|||||||||||||||:!::!!|||:!!|||:!!|||||| !! ! ! GlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSer 38648 : ggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCT : 38707 296 : IleThrAlaCysGlyPhePheProIleSerLeuGluThrTyrThrSerIle : 312 :!:|||||||||||||||||| !!|||||||||||||||!:!|||!.!:!! LeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 38708 : TTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 38760 vulgar: gi|805825623|ref|XP_012152696.1| 235 312 . KQ414828.1 38529 38760 + 271 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38530 38760 271 + . gene_id 8 ; sequence gi|805825623|ref|XP_012152696.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38530 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38530 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38530 38760 271 + . alignment_id 8 ; Query gi|805825623|ref|XP_012152696.1| ; Align 38530 236 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825623|ref|XP_012152696.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 261 Query range: 0 -> 114 Target range: 36171 -> 37573 1 : MetGluThrLysTyrSerThrAspIleAlaValArgLeuThrPhePheTyrLeuLysIle : 20 |||... !|||||| !! !|||:!!:!!:!!!:!|||.!! !|||!:!||| ! :!! MetSerLeuLysTyrArgGlnAspValSerIleLysLeuAlaAsnPhePheLeuTyrVal 36172 : ATGAGCTTGAAATATCGTCAAGACGTTTCCATTAAATTAGCCAACTTTTTTCTGTATGTC : 36229 21 : IleGlyPheTrpPheAlaArgSerArgLeuGlnLeuTrpPheArgHisLeuMetValIle : 40 :!!||||||||||||||| !!:!|||:!!:!! !|||||||||:!! ! !:!!:!: ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeu 36230 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCGGCGATTCTG : 36289 41 : TyrThrPheIleMetAsnMetPheThrMetTrpLeuGlnCysMetGlyIleTyrHisPhe : 60 ||||||.!!:!!! ! !.!.|||..!|||||||||||| ! |||:!!|||:!! ! TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrTyrAla 36290 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGGCTTTATTACGCC : 36349 61 : TrpGlyAspPheThrMetCysThrTyrIleLeuValAsnValSerValAsnIle{Gl} : 79 ||||||:!!.!! !:!: !! !! :!:|||:!! ! ! !!!.! !!|||{ !} TrpGlyAsnLeuGluValSerGlyLeuLeuLeuMetPheArgArgAlaTyrIle{**}-+ 36350 : TGGGGAAACCTTGAAGTAAGTGGATTGTTGTTGATGTTTCGTCGAGCGTACATT{TG}tt : 36408 80 : >>>> Target Intron 1 >>>> {y}LysAsnGluSerGluArgValLeuLeuPhe : 89 1060 bp {!}||||||||||||!!:|||! !! !:!!!:! -+{*}LysAsnGluSerAspArgGluHisIleTyr 36409 : .........................gg{A}AAGAATGAATCTGATAGAGAACATATATAC : 37496 90 : HisMetTrpLeuAspLeuProValSerMetSerProTyrPheGluIleMetTyrValLeu : 109 !!||||||||||||||||||:!!|||!!:!!!||||||:::|||||| |||:!!:!! AspMetTrpLeuAspLeuProLeuSerIleThrProTyrTyrGluIleThrTyrIleIle 37497 : GATATGTGGCTCGATCTACCATTATCCATAACAccatattatgaaattacttACATAATA : 37556 110 : GlnValLeuSerLeu : 114 ||||||||| !!:!! GlnValLeuProIle 37557 : CAGGTATTACCAATT : 37573 vulgar: gi|805825623|ref|XP_012152696.1| 0 114 . KQ414828.1 36171 37573 + 261 M 78 234 S 0 2 5 0 2 I 0 1056 3 0 2 S 1 1 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 36172 37573 261 + . gene_id 9 ; sequence gi|805825623|ref|XP_012152696.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 36172 36407 . + . KQ414828.1 exonerate:protein2genome:local exon 36172 36407 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 36408 36409 . + . intron_id 1 ; splice_site "TT" KQ414828.1 exonerate:protein2genome:local intron 36408 37467 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37466 37467 . + . intron_id 0 ; splice_site "GG" KQ414828.1 exonerate:protein2genome:local cds 37468 37573 . + . KQ414828.1 exonerate:protein2genome:local exon 37468 37573 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 36172 37573 261 + . alignment_id 9 ; Query gi|805825623|ref|XP_012152696.1| ; Align 36172 1 234 ; Align 37469 80 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825623|ref|XP_012152696.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 237 Query range: 0 -> 114 Target range: 26060 -> 27462 1 : MetGluThrLysTyrSerThrAspIleAlaValArgLeuThrPhePheTyrLeuLysIle : 20 |||... !|||||| !! !|||:!!:!!|||||||||.!! !|||!:!||| ! :!! MetSerLeuLysTyrArgGlnAspValSerValArgLeuAlaAsnPhePheLeuTyrVal 26061 : ATGAGCTTGAAATATCGTCAAGACGTTTCCGTTAGATTAGCCAACTTTTTTCTGTATGTC : 26118 21 : IleGlyPheTrpPheAlaArgSerArgLeuGlnLeuTrpPheArgHisLeuMetValIle : 40 :!!||||||||||||||| !!:!|||:!!:!! !|||||||||:!! ! !:!!:!: ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeu 26119 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCGGCGATTCTG : 26178 41 : TyrThrPheIleMetAsnMetPheThrMetTrpLeuGlnCysMetGlyIleTyrHisPhe : 60 ||||||.!!:!!! ! !.!.|||..!|||||||||||| |||:!!||| ! ! TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuGlyGlyLeuTyrPheAla 26179 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGGGAGGGCTTTATTTCGCC : 26238 61 : TrpGlyAspPheThr >>>> Target Intron 1 >>>> MetCysThrTyrIleL : 71 ||||||:!!||| ! 1066 bp ! !!.. . TrpGlyAsnPheGlu++ ++***PheAsnGlyAsnP 26239 : TGGGGAAACTTTGAAgt.........................agTAATTTAatgggaatt : 27337 72 : euValAsnValSerValAsnIleGlyLysAsnGluSerGluArgValLeuLeuPheHisM : 91 ..::: ...!:!:!!...! ..!:!!:::!!:!!!|||!.!:!! ||| !!| heIleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIle------PheAspM 27338 : ttattttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATA------TTCGATA : 27391 92 : etTrpLeuAspLeuProValSerMetSerProTyrPheGluIleMetTyrValLeuGlnV : 111 |||||!!!|||||||||:!!|||:!:!!!||||||:::|||||| |||:!!:!!|||| etTrpPheAspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnV 27392 : TGTGGTTCGATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGG : 27451 112 : alLeuSerLeu : 114 ||||| !!:!! alLeuProIle 27452 : TATTACCAATT : 27462 vulgar: gi|805825623|ref|XP_012152696.1| 0 114 . KQ414828.1 26060 27462 + 237 M 65 195 5 0 2 I 0 1062 3 0 2 M 21 63 G 2 0 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26061 27462 237 + . gene_id 10 ; sequence gi|805825623|ref|XP_012152696.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 26061 26255 . + . KQ414828.1 exonerate:protein2genome:local exon 26061 26255 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 26256 26257 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 26256 27321 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 27320 27321 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 27322 27462 . + . KQ414828.1 exonerate:protein2genome:local exon 27322 27462 . + . insertions 0 ; deletions 2 KQ414828.1 exonerate:protein2genome:local similarity 26061 27462 237 + . alignment_id 10 ; Query gi|805825623|ref|XP_012152696.1| ; Align 26061 1 195 ; Align 27322 66 63 ; Align 27385 89 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 1027 Query range: 0 -> 369 Target range: 21030 -> 24178 1 : MetGlyMetGluTyrThrSerAspIleAlaValArgLeuThrIlePheTyrLeuLysVal : 20 |||.!!:!!:!!||| !..!|||:!!:!!|||||||||.!!! !||||||||| ! ||| MetSerLeuLysTyrArgGlnAspValSerValArgLeuAlaAsnPheTyrLeuTyrVal 21031 : ATGAGCTTGAAATATCGCCAAGACGTTTCCGTTAGATTAGCCAATTTTTATCTGTATGTC : 21088 21 : ValGlyPheTrpPheAlaAlaAsnArgLeuGlnGlnLeuPheArgCysLeuThrValIle : 40 |||||||||||||||||||||||||||:!!:!!:!!! !||| !! ! !.!!:!!:!: ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheGlyAsnAlaAlaIleLeu 21089 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCGGAAACGCGGCGATTCTG : 21148 41 : TyrThrIleValMetSerValPheAlaLeuTrpIleGlnSerMetGlyIleTyrTyrCys : 60 ||||||||||||! ! ! !!|||!.!:!!|||:!!||| !! |||:!!|||!:!! ! TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSer 21149 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGACTTTATTTCTCC : 21208 61 : TrpGlyAspTyrThr >>>> Target Intron 1 >>>> MetCysThrTyrIleP : 71 ||||||:!!!:! ! 666 bp :!:|||! !|||!!: TrpGlyAsnPheGlu++ ++ValCysMetTyrMetA 21209 : TGGGGAAACTTTGAAgt.........................aggTTTGCATGTACATGG : 21907 72 : heValAsnIleLeuGlyIleAlaIleSerLeuLeuLysLeuCysLeuLeuLeuValGlnL : 91 !|||! !|||!.!:!:!.!:!:..!:!!:!!|||:!!! !:!!|||||||||!:!| laCysAsnSerLeuAlaLeuValLeuAspIleIleLysIlePheValLeuLeuValArgL 21908 : CATGCAACAGTTTAGCCCTGGTTTTGGATATAATCAAGATTTTCGTCCTACTCGTACGGA : 21967 92 : ysGluLysPheLeuArgLeuIleGluPheMetGlnArgAsnPheTrpHisSerAsnTyrS : 111 ||:!!||||||||| !!|||||||||!:!||||||!:!||||||||||||! !||||||. ysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheTrpHisLeuAsnTyrA 21968 : AGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTTTGGCATTTGAACTACG : 22027 112 : erGlnLysGluIleLysIlePheAla{V} >>>> Target Intron 2 >>>> {a : 120 .!||| ! |||! !...|||.!!|||{ } 260 bp { spGlnAspGluAsnSerIleIleAla{P}-- ++{r 22028 : ACCAGGACGAGAATTCTATTATCGCA{C}ac.........................ag{c : 22315 121 : l}AsnIleGlyLysAsnGluSerGluArgValLeuLeuPheHisMetTrpLeuAspLeuP : 140 !}|||:!!|||||||||||||||!!:|||! !! !:!!!:! !!|||||||||||||||| o}AsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuP 22316 : a}AATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTAC : 22374 141 : roLeuSerThrThrProTyrPheGluIleMetTyrValLeuGln >>>> Target In : 155 ||||||||..!|||||||||:::|||||| |||:!!:!!||| 307 roLeuSerValThrProTyrTyrGluIleThrTyrIleIleGln++ 22375 : CATTATCCGTAACAccatattatgaaattacttACATAATACAGgt.............. : 22421 156 : tron 3 >>>> ValLeuSerLeuTyrGlnCysAspValGlyTyrIleCysPheAspAs : 170 bp !.!||||||:!!|||||| !..!!.! !!|||:!!||||||||| ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIl 22422 : ...........agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatat : 22771 171 : nIlePheCysValMetCysLeuHisSerAlaGlyGlnPheArgIleLeuGlnTyrArgLe : 190 |||||| ::::::||||||||| !||||||||||||||||||||||||||||||:! eIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIl 22772 : catttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAAT : 22831 191 : uLysAsnValHisGlnLeuAlaSerLysHisGluAspAsnSerAsnAsnSerAla<->Se : 209 ! |||||| |||::!..!! ! :!!..!!:!..!||| |||.!! .. eAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSerThrAspGl 22832 : TGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGA : 22891 210 : rTyrPheSerTyrLysCysPheValValPheLysAspCysValArgGlnHisGlnIleIl : 229 !! !:!||| ! ||||||!:!:!! !||||||:!!|||:!!!:!||||||||| !:! uLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLe 22892 : ATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACT : 22951 230 : eIleAlaPheCysLysLeuPheGluGluValPheLysValIleValLeuCysGlnValIl : 249 !|||! !|||||| ! !.!!||||||||||||! !|||||||||||| ! ||||||:! uIleGluPheCysAlaThrLeuGluGluValPheThrValIleValLeuGlyGlnValLe 22952 : AATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCT : 23011 250 : eMetPheSerMetLeuValCysLeuValGlyTyrGlnIlePheLeu >>>> Target : 265 !|||! !|||!!:|||:!!|||!!!:!!|||||||||:!!.!!||| 49 uMetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeu++ 23012 : AATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGgt............ : 23061 266 : Intron 4 >>>> ValAspLeuAsnLeuProMetArgValSerLeuThrSerPheIle : 279 2 bp :!! ! |||:::!!! ! !||||||:!!!!!.!!!!!|||:!: ++IleLysLeuSerPheGluSerArgValAlaPheAlaCysPheLeu 23062 : .............agATAAAGTTATCATTTGAATCGCGCGTTGCTTTCGCGTGCTTCTTG : 23593 280 : IleSerAsnLeuCysGlnLeuTrpValPheThrTyrSerCysAspThrMetThrArgGlu : 299 !!:! !..!:!! !!|||||||||:!!|||||||||||||||||| !!!:|||! !||| MetMetGlyMetSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGlu 23594 : ATGATGGGCATGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCATAACAACAGAA : 23653 300 : SerLeuSerValGlyThrAlaMetTyrGluAlaProTrpProGlnLeuProThrAspLys : 319 ||||||!:!:!!!.! !:!!:!!|||! !.!|||||| !.!.||||||! !|||||| SerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLys 23654 : AGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATGGACAAA : 23713 320 : PheGlyLysMetIleArgLysAspMetGlnIleValIleMetArgSerLysArgGlyCys : 339 |||||||||:!!:!!||||||!!::!!|||!!::!!|||:!!|||:!!!:!||| !! ! PheGlyLysLeuLeuArgLysGluLeuGlnMetLeuIleLeuArgAlaArgArgProSer 23714 : TTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGGGCGAGACGACCTTCC : 23773 340 : HisIleThrAlaCysGlyPhePheProIleSerLeuGluThrTyrThrLys >>>> Ta : 357 !:!:|||||||||||||||||| !!|||||||||||||||!:!|||||| AlaLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 23774 : GCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt....... : 23829 358 : rget Intron 5 >>>> IleMetSerThrAlaMetSerTyrPheThrLeuLeuLys : 369 313 bp ||||||||||||:!!|||||||||||||||||||||||| ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLys 23830 : ..................agATCATGAGTACATCAATGTCGTATTTCACATTATTAAAA : 24178 vulgar: gi|805825625|ref|XP_012152697.1| 0 369 . KQ414828.1 21030 24178 + 1027 M 65 195 5 0 2 I 0 662 3 0 2 M 54 162 S 0 1 5 0 2 I 0 256 3 0 2 S 1 2 M 34 102 5 0 2 I 0 303 3 0 2 M 54 162 G 0 3 M 56 168 5 0 2 I 0 488 3 0 2 M 92 276 5 0 2 I 0 309 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21031 24178 1027 + . gene_id 1 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 21031 21225 . + . KQ414828.1 exonerate:protein2genome:local exon 21031 21225 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 21226 21227 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 21226 21891 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 21890 21891 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 21892 22054 . + . KQ414828.1 exonerate:protein2genome:local exon 21892 22054 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22055 22056 . + . intron_id 2 ; splice_site "AC" KQ414828.1 exonerate:protein2genome:local intron 22055 22314 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 22313 22314 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 22315 22418 . + . KQ414828.1 exonerate:protein2genome:local exon 22315 22418 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22419 22420 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22419 22725 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 23058 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23059 23060 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23059 23550 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 23549 23550 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 23551 23826 . + . KQ414828.1 exonerate:protein2genome:local exon 23551 23826 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23827 23828 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23827 24139 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 24138 24139 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 24140 24178 . + . KQ414828.1 exonerate:protein2genome:local exon 24140 24178 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21031 24178 1027 + . alignment_id 1 ; Query gi|805825625|ref|XP_012152697.1| ; Align 21031 1 195 ; Align 21892 66 162 ; Align 22317 121 102 ; Align 22726 155 162 ; Align 22891 209 168 ; Align 23551 265 276 ; Align 24140 357 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 959 Query range: 0 -> 374 Target range: 36171 -> 39217 1 : MetGlyMetGluTyrThrSerAspIleAlaValArgLeuThrIlePheTyrLeuLysVal : 20 |||.!!:!!:!!||| !..!|||:!!:!!:!!!:!|||.!!! !|||!:!||| ! ||| MetSerLeuLysTyrArgGlnAspValSerIleLysLeuAlaAsnPhePheLeuTyrVal 36172 : ATGAGCTTGAAATATCGTCAAGACGTTTCCATTAAATTAGCCAACTTTTTTCTGTATGTC : 36229 21 : ValGlyPheTrpPheAlaAlaAsnArgLeuGlnGlnLeuPheArgCysLeuThrValIle : 40 |||||||||||||||||||||||||||:!!:!!:!!! !|||||| ! !.!!:!!:!: ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeu 36230 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCGGCGATTCTG : 36289 41 : TyrThrIleValMetSerValPheAlaLeuTrpIleGlnSerMetGlyIleTyrTyrCys : 60 ||||||||||||! ! ! !!|||!.!:!!|||:!!||| !! |||:!!||||||..! TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrTyrAla 36290 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGGCTTTATTACGCC : 36349 61 : TrpGlyAspTyrThr >>>> Target Intron 1 >>>> MetCysThrTyrIleP : 71 ||||||:!! ! ! 669 bp :!:|||! !|||!!: TrpGlyAsnLeuGlu++ ++ValCysMetTyrMetA 36350 : TGGGGAAACCTTGAAgt.........................agGTTTGCATGTACATGG : 37051 72 : heValAsnIleLeuGlyIleAlaIleSerLeuLeuLysLeuCysLeuLeuLeuValGlnL : 91 ! !||| !|||!.!!!:!.!:!:..!:!!:!!|||:!!! !! !|||:!!|||!!.| laGlyAsnGlyLeuAlaMetValLeuAspIleIleLysIlePheSerLeuValValHisL 37052 : CAGGCAACGGTTTAGCCATGGTTTTGGATATAATCAAGATTTTCTCCCTAGTCGTACACA : 37111 92 : ysGluLysPheLeuArgLeuIleGluPheMetGlnArgAsnPheTrpHisSerAsnTyrS : 111 ||:!!||||||||| !!|||||||||!:!||||||!:!||||||! !|||! !||||||. ysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheLeuHisLeuAsnTyrA 37112 : AGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTCTTGCATTTGAACTACG : 37171 112 : erGlnLysGluIleLysIlePheAla{V} >>>> Target Intron 2 >>>> {a : 120 .!||| ! |||! !...:!!.!!|||{ } 259 bp { spGlnTyrGluAsnSerValIleAla{P}-- ++{r 37172 : ATCAGTACGAGAATTCTGTTATCGCA{C}ag.........................ag{c : 37458 121 : l}AsnIleGlyLysAsnGluSerGluArgValLeuLeuPheHisMetTrpLeuAspLeuP : 140 !}|||:!!|||||||||||||||!!:|||! !! !:!!!:! !!|||||||||||||||| o}AsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuP 37459 : a}AATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTAC : 37517 141 : roLeuSerThrThrProTyrPheGluIleMetTyrValLeuGln >>>> Target In : 155 ||||||||! !|||||||||:::|||||| |||:!!:!!||| 307 roLeuSerIleThrProTyrTyrGluIleThrTyrIleIleGln++ 37518 : CATTATCCATAACAccatattatgaaattacttACATAATACAGgt.............. : 37564 156 : tron 3 >>>> ValLeuSerLeuTyrGlnCysAspValGlyTyrIleCysPheAspAs : 170 bp !.!||||||:!!|||||| !..!!.! !!|||:!!||||||||| ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIl 37565 : ...........agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatat : 37914 171 : nIlePheCysValMetCysLeuHisSerAlaGlyGlnPheArgIleLeuGlnTyrArgLe : 190 |||||| ::::::||||||||| !||||||||||||||||||||||||||||||:! eIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIl 37915 : catttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAAT : 37974 191 : uLysAsnValHisGlnLeuAlaSerLysHisGluAspAsnSerAsnAsnSerAla<->Se : 209 ! |||||| |||::!..!! ! :!!..!!:!..!||| |||.!! .. eAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSerThrAspGl 37975 : TGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGA : 38034 210 : rTyrPheSerTyrLysCysPheValValPheLysAspCysValArgGlnHisGlnIleIl : 229 !! !:!||| ! ||||||!:!:!! !||||||:!!|||:!!!:!||||||||| !:! uLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLe 38035 : ATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACT : 38094 230 : eIleAlaPheCysLysLeuPheGluGluValPheLysValIleValLeuCysGlnValIl : 249 !|||! !|||||| ! !.!!||||||||||||! !||||||!.!||| ! ||||||:! uIleGluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnValLe 38095 : AATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCT : 38154 250 : eMetPheSerMetLeuValCysLeuValGlyTyrGlnIlePheLeuValAspLeu >>> : 268 !|||||||||!!:|||:!!|||!!!|||! !|||||| !.!!||||||..!:!! uMetPheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeuValSerIle++ 38155 : AATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGGTGAGTATCgt... : 38213 269 : > Target Intron 4 >>>> AsnLeuProMetArgValSerLeuThrSerPheIle : 279 280 bp |||... !!:!! !! !! ! ! ++AsnPheTyrTyrLeuTrpAsn***MetPheAlaThr 38214 : ......................agaatttttattacctgTGGAATTAAATGTTCGCAACG : 38524 280 : IleSerAsnLeuCysGlnLeuTrpValPheThrTyrSerCysAspThrMetThrArgGlu : 299 !!:!!!..!:!! !!|||||||||:!!|||||||||||||||||| !!!:|||! !||| MetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGlu 38525 : ATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAA : 38584 300 : SerLeuSerValGlyThrAlaMetTyrGluAlaProTrpProGlnLeuProThrAspLys : 319 ||||||!:!:!!!.! !:!!:!:|||! !.!|||||| !.!.||||||! |||||| SerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLys 38585 : AGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaa : 38644 320 : PheGlyLysMetIleArgLysAspMetGlnIleValIleMetArgSerLysArgGlyCys : 339 |||||||||::::!!|||||||||:!:|||:!::!!|||:!!|||:!!!:!||| !! ! PheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSer 38645 : tttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCC : 38704 340 : HisIleThrAlaCysGlyPhePheProIleSerLeuGluThrTyrThrLys >>>> Ta : 357 !:!:|||||||||||||||||| !!|||||||||||||||!:!|||||| SerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 38705 : TCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt....... : 38760 358 : rget Intron 5 >>>> IleMetSerThrAlaMetSerTyrPheThrLeuLeuLysG : 370 406 bp ||||||||||||:!!|||||||||||||||||||||||| ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysG 38761 : ..................agATCATGAGTACATCAATGTCGTATTTCACATTATTAAAAC : 39203 371 : lySerThrIleAsp : 374 !|||! ! !||| lnSerIleAspAsp 39204 : AAAGTATCGACGAC : 39217 vulgar: gi|805825625|ref|XP_012152697.1| 0 374 . KQ414828.1 36171 39217 + 959 M 65 195 5 0 2 I 0 665 3 0 2 M 54 162 S 0 1 5 0 2 I 0 255 3 0 2 S 1 2 M 34 102 5 0 2 I 0 303 3 0 2 M 54 162 G 0 3 M 59 177 5 0 2 I 0 276 3 0 2 M 89 267 5 0 2 I 0 402 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 36172 39217 959 + . gene_id 2 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 36172 36366 . + . KQ414828.1 exonerate:protein2genome:local exon 36172 36366 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 36367 36368 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 36367 37035 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37034 37035 . + . intron_id 0 ; splice_site "aG" KQ414828.1 exonerate:protein2genome:local cds 37036 37198 . + . KQ414828.1 exonerate:protein2genome:local exon 37036 37198 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37199 37200 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local intron 37199 37457 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 37456 37457 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 37458 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37458 37561 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 38210 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 38210 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 38211 38212 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 38211 38490 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 38489 38490 . + . intron_id 3 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 38491 38757 . + . KQ414828.1 exonerate:protein2genome:local exon 38491 38757 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 38758 38759 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 38758 39163 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 39162 39163 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 39164 39217 . + . KQ414828.1 exonerate:protein2genome:local exon 39164 39217 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 36172 39217 959 + . alignment_id 2 ; Query gi|805825625|ref|XP_012152697.1| ; Align 36172 1 195 ; Align 37036 66 162 ; Align 37460 121 102 ; Align 37869 155 162 ; Align 38034 209 177 ; Align 38491 268 267 ; Align 39164 357 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 648 Query range: 151 -> 374 Target range: 32795 -> 34313 152 : ValLeuGlnValLeuSerLeuTyrGlnCysAspValGlyTyrIleCysPheAspAsnIle : 171 ::! !|||!.!||||||:!!|||||| !! ||| !!|||:!!||||||||||||||| LeuThrGlnAlaLeuSerValTyrGlnValGlyValCysTyrLeuCysPheAspAsnIle 32796 : ctCACGCAGGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCTttgataacatt : 32853 172 : PheCysValMetCysLeuHisSerAlaGlyGlnPheArgIleLeuGlnTyrArgLeuLys : 191 ||| :::|||||||||||| !||||||||||||||||||||||||||||||:!! PhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAla 32854 : tttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCC : 32913 192 : AsnValHisGlnLeuAlaSerLysHisGluAspAsnSerAsnAsnSer<->AlaSerTyr : 210 |||||| |||::!..!! ! :!!..!|||..!|||!..||| |||..!! AsnValSerGlyLeuSerGluIleValLysSerAsnAspAsnThrSerThrAlaGluLeu 32914 : AATGTGTCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACAAGCACGGCTGAATTA : 32973 211 : PheSerTyrLysCysPheValValPheLysAspCysValArgGlnHisGlnIleIleIle : 230 !:!||| ! ||||||!:!:!! !||||||:!!|||:!!!:!||||||||| !:!:||| TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 32974 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTaatt : 33033 231 : AlaPheCysLysLeuPheGluGluValPheLysValIleValLeuCysGlnValIleMet : 250 ||||||::::::..!||||||||||||! !|||||||||||| ! ||||||:!!||| GluPheCysGluIleLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMet 33034 : gaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTAATG : 33093 251 : PheSerMetLeuValCysLeuValGlyTyrGlnIlePheLeu >>>> Target Intr : 265 ||||||!!::!!:!!|||!!!!.!||||||:!!:!!.!!||| 406 bp PheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeu++ 33094 : TTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGgt................ : 33140 266 : on 1 >>>> ValAspLeuAsnLeuProMetArgValSerLeuThrSerPheIleIleS : 281 :!! ||| !!! ! !||||||:!!!!!|||!!!|||:!:|||! ++IleThrLeuProPheGluSerArgValAlaPheThrCysPheLeuIleT 33141 : .........agATAACGTTACCATTTGAATCGCGCGTTGCTTTCACGTGCTTCTTGATTA : 33592 282 : erAsnLeuCysGlnLeuTrpValPheThrTyrSerCysAspThrMetThrArgGluSerL : 301 !!..!:!! !!|||||||||:!!|||||||||||||||:!! !!!:|||! !||||||| hrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAsnCysIleThrThrGluSerL 33593 : CGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCAATTGCATAACAACAGAAAGCC : 33652 302 : euSerValGlyThrAlaMetTyrGluAlaProTrpProGlnLeuProThrAspLysPheG : 321 ||!:!:!!!.! !:!!:!!|||! !.!|||||| !.!.||||||! |||||||||| euAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheG 33653 : TGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATggataaatttg : 33712 322 : lyLysMetIleArgLysAspMetGlnIleValIleMetArgSerLysArgGlyCysHisI : 341 |||||::::!!|||||||||:!:|||:!::!!|||:!!|||:!!!:!||| !! ! !: lyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerAlaL 33713 : gaaaactgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCGCTT : 33772 342 : leThrAlaCysGlyPhePheProIleSerLeuGluThrTyrThrLys >>>> Target : 357 !:|||||||||||||||||| !!|||!!!|||||||||!:!|||||| 4 euThrAlaCysGlyPhePheSerIleThrLeuGluThrPheThrLys++ 33773 : TGACTGCCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTACTAAGgt........... : 33822 358 : Intron 2 >>>> IleMetSerThrAlaMetSerTyrPheThrLeuLeuLysGlySe : 371 40 bp ||||||||||||:!!|||||||||||||||||||||||| !|| ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnSe 33823 : ..............agATCATGAGTACATCAATGTCGTATTTCACCCTACTAAAACAAAG : 34302 372 : rThrIleAsp : 374 |.!! ||| rAlaGluAsp 34303 : TGCCGAGGAC : 34313 vulgar: gi|805825625|ref|XP_012152697.1| 151 374 . KQ414828.1 32795 34313 + 648 M 56 168 G 0 3 M 57 171 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32796 34313 648 + . gene_id 3 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32796 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32796 33137 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 2 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34313 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34313 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32796 34313 648 + . alignment_id 3 ; Query gi|805825625|ref|XP_012152697.1| ; Align 32796 152 168 ; Align 32967 208 171 ; Align 33544 265 276 ; Align 34260 357 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 621 Query range: 119 -> 377 Target range: 17824 -> 19918 120 : ValAsnIleGlyLysAsnGluSerGluArgValLeuLeuPheHisMetTrpLeuAspLeu : 139 ...|||||||||||||||||||||||||||:!!|||! !|||:!!||||||:!!:!!||| AlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpValAsnLeu 17825 : gcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTCAACTTG : 17882 140 : ProLeuSerThrThrProTyrPheGluIleMetTyrValLeuGln >>>> Target I : 155 |||||||||! !|||||||||!:!|||||| ::: |||||| 110 ProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln++ 17883 : CCATTATCAATGACGCCATATTACgaaataactttttcattaCAGgt............. : 17932 156 : ntron 1 >>>> ValLeuSerLeuTyrGlnCysAspValGlyTyrIleCysPheAspA : 170 bp |||||||||||||||!!. !! !|||.!!|||.!!|||||||||| ++ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysPheAspA 17933 : ............aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgcttcgaca : 18085 171 : snIlePheCysValMetCysLeuHisSerAlaGlyGlnPheArgIleLeuGlnTyrArgL : 190 ||......|||::!||| !||||||:!!||| !|||||||||:!!||||||||||||: snPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnTyrArgM 18086 : attttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAATACCGAA : 18145 191 : euLysAsnValHisGlnLeuAlaSerLysHisGluAspAsnSerAsnAsn<-><-><->< : 207 !! !|||:!! !.!.||| !...|||...... ... ||| etAlaAsnMetThrAspLeuLysAspLysGluArgLysGluArgAsnMetLysThrSerV 18146 : TGGCGAATATGACCGATTTAAAGGacaaagagaggaaagagagaaatatgaAGACAAGTG : 18205 208 : ->SerAlaSerTyrPheSerTyrLysCysPheValValPheLysAspCysValArgGlnH : 226 |||:!!:!!! !|||:!! :!!|||!:! !|||.!!||||||! !:!!||||||| alSerSerAlaCysPheAlaThrGluCysTyrAsnValLeuLysAspTyrIleArgGlnH 18206 : TGAGTTCGGCGTGCTTTGCAACAGAATGTTACAACGTTCTCAAAGATTATATCAGACAGC : 18265 227 : isGlnIleIleIleAlaPheCysLysLeuPheGluGluValPheLysValIleValLeuC : 246 |||||! !:!:||||||!:!|||!!. !.!!|||:!!||||||!!.:!!||||||||| isGlnAsnLeuIleAlaTyrCysAsnLysLeuGluLysValPheAsnIleIleValLeuG 18266 : ATCAGAACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGTTCAATATCATTGTTCTGG : 18325 247 : ysGlnValIleMetPheSerMetLeuValCysLeuValGlyTyrGlnIlePheLeu >> : 265 ! |||:!!:!!|||||||||||||||:!!||||||! !|||!:!||||||.!!:!! lyGlnLeuLeuMetPheSerMetLeuIleCysLeuAspGlyPheGlnIleLeuMet++ 18326 : GGCAATTGTTAATGTTCAGCATGTTGATCTGTCTCGATGGATTTCAGATACTTATGgt.. : 18384 266 : >> Target Intron 2 >>>> ValAspLeuAsnLeuProMetArgValSerLeuTh : 276 975 bp !.!:!! ! ! ! !! |||:!!! !!!!! ++AlaAsnThrProThrArgThrArgLeuIlePheIl 18385 : .......................agGCAAATACACCTACCAGAACCCGACTGATTTTCAT : 19390 277 : rSerPheIleIleSerAsnLeuCysGlnLeuTrpValPheThrTyrSerCysAspThrMe : 296 !! ! !||| !:!! !:!!||||||||| !:!!|||||||||||||||||| !!! ePheHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIl 19391 : CTTTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGCTGCGACTGCAT : 19450 297 : tThrArgGluSerLeuSerValGlyThrAlaMetTyrGluAlaProTrpProGlnLeuPr : 316 :! !||||||||| !|||..!!.! !|||:!!|||...!.!|||||| !!! ||||| eIleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyProTrpThrLeuLeuPr 19451 : CATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGACACTTTTACC : 19510 317 : oThrAspLysPheGlyLysMetIleArgLysAspMetGlnIleValIleMetArgSerLy : 336 |! !..! ! !|||||||||||||||||||||:!!..!:!!|||||||||||||||!. oMetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuValIleMetArgSerSe 19511 : AATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCATGAGATCGAG : 19570 337 : sArgGlyCysHisIleThrAlaCysGlyPhePheProIleSerLeuGluThrTyrThrLy : 356 . ! !||| !:!:|||||| ! ||||||||| !:!:|||||||||||||||||| rValProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGluThrTyrThrGl 19571 : CGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAACGTACACAGG : 19630 357 : s >>>> Target Intron 3 >>>> IleMetSerThrAlaMetSerTyrPheThr : 366 ! 223 bp :!!:!:||||||||| |||||||||||| y++ ++ValLeuSerThrAlaAlaSerTyrPheThr 19631 : Ggt.........................agGTTTTAAGCACCGCAGCCTCATACTTTACG : 19883 367 : LeuLeuLysGlySerThrIleAspValAspThr : 377 ||||||||| !!!!:!! :!!!.!|||!:! LeuLeuLysGlnArgSerGluAsnAlaAspSer 19884 : TTGCTGAAGCAAAGATCAGAGAATGCCGACAGT : 19918 vulgar: gi|805825625|ref|XP_012152697.1| 119 377 . KQ414828.1 17824 19918 + 621 M 35 105 5 0 2 I 0 106 3 0 2 M 52 156 G 0 12 M 58 174 5 0 2 I 0 971 3 0 2 M 92 276 5 0 2 I 0 219 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17825 19918 621 + . gene_id 4 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17825 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17825 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18381 . + . insertions 12 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19918 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19918 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17825 19918 621 + . alignment_id 4 ; Query gi|805825625|ref|XP_012152697.1| ; Align 17825 120 105 ; Align 18040 155 156 ; Align 18208 207 174 ; Align 19357 265 276 ; Align 19856 357 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 620 Query range: 116 -> 369 Target range: 2870 -> 6456 117 : IlePheAlaValAsnIleGlyLysAsnGluSerGluArgValLeuLeuPheHisMetTrpLe : 137 .!!|||:!!!.!!::||||||||||||||||||!!:|||:!!|||:!! !!:!!.!.|||:! PhePheSerAlaSerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIl 2871 : TTCTTCTCAGCAAgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGAT : 2931 138 : uAspLeuProLeuSerThrThrProTyrPheGluIleMetTyrValLeuGln >>>> Tar : 155 !|||||||||:!!!!!! !|||||||||:::||||||::::::...:!!||| eAspLeuProIleThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2932 : TGACCTGCCGATAACCATCACACCATactatgaaatattatttacgaTACAGgt........ : 2987 156 : get Intron 1 >>>> ValLeuSerLeuTyrGlnCysAspValGlyTyrIleCysPheA : 169 406 bp :!!!!!! !:!! ! ! !:!!.!!|||:!!|||.!!| ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleA 2988 : .................agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCG : 3433 170 : spAsnIlePheCysValMetCysLeuHisSerAlaGlyGlnPheArgIleLeuGlnTyrArg : 189 |||||.!!.!.|||:!!!!: !||||||!!!||| !|||||||||||||||||||||||| spAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArg 3434 : ACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGA : 3493 190 : LeuLysAsnValHisGlnLeuAlaSerLysHisGluAspAsnSerAsnAsnSerAlaSerTy : 210 |||..!|||||| ! |||!:!:!!!.!...|||... :::......... !!! LeuSerAsnValCysGly---AlaAsnGluArgSerAspLysIleSerLysLysThrProSe 3494 : CTGTCGAATGTGTGCGGT---GCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTC : 3553 211 : rPheSerTyrLysCysPheValValPheLysAspCysValArgGlnHisGlnIleIleIleA : 231 ! !||| !!:!!|||!:!!.! !||||||:!!|||:!!!:!||||||||| !:!!|||! rAsnSerAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleG 3554 : CAATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAG : 3616 232 : laPheCysLysLeuPheGluGluValPheLysValIleValLeuCysGlnValIleMetPhe : 251 !!:!|||!!. !.!!:!!||||||||| :!!.!!||||||...||||||:!::!:||| luTyrCysAsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPhe 3617 : AATACTGTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTC : 3676 252 : SerMetLeuValCysLeuValGlyTyrGlnIlePheLeu >>>> Target Intron 2 : 265 |||:!!|||:!!||||||! !|||||| :!: ! :!! 457 bp SerLeuLeuMetCysLeuAspGlyTyr---LeuValMet++ 3677 : AGTTTGTTAATGTGCCTCGATGGATAT---TTGGTGATGgt..................... : 3717 266 : >>>> ValAspLeuAsnLeuProMetArgValSerLeuThrSerPheIleIleSerAsnLe : 283 ! !||| ! !:!! !..!|||:!!!!!!!! !! ! !:!!! .!! !|| ++GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLe 3718 : ....agGAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCT : 4226 284 : uCysGlnLeuTrpValPheThrTyrSerCysAspThrMetThrArgGluSerLeuSerValG : 304 ||||||||||! !:!!|||||||||||||||||| !:!!! !||||||||||||!:!|||! uCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValA 4227 : GTGCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGG : 4289 305 : lyThrAlaMetTyrGluAlaProTrpProGlnLeuProThrAspLysPheGlyLysMetIle : 324 .!!.!|||!!:|||!!:..! !!||| !!!.||||||! !|||!:!! !|||::!|||:!: laAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeu 4290 : CCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTG : 4349 325 : ArgLysAspMetGlnIleValIleMetArgSerLysArgGlyCysHisIleThrAlaCysGl : 345 |||||||||:!! !.!!|||||| ||||||!:! ! !||| !:!!||||||||||| ArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGl 4350 : CGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGG : 4412 346 : yPhePheProIleSerLeuGluThrTyrThrLys >>>> Target Intron 3 >>>> : 357 ||||||||||:!:||||||||||||||||||..! 1970 bp yPhePheProValSerLeuGluThrTyrThrSer++ + 4413 : ATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt.........................a : 6416 358 : IleMetSerThrAlaMetSerTyrPheThrLeuLeuLys : 369 :!!!!:|||||||||:!!||||||||||||||||||!:! +ValIleSerThrAlaValSerTyrPheThrLeuLeuArg 6417 : gGTTATAAGTACAGCAGTGTCGTACTTCACACTGTTAAGG : 6456 vulgar: gi|805825625|ref|XP_012152697.1| 116 369 . KQ414828.1 2870 6456 + 620 M 38 114 5 0 2 I 0 402 3 0 2 M 41 123 G 1 0 M 64 192 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2871 6456 620 + . gene_id 5 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2871 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2871 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 0 ; deletions 2 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6456 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6456 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2871 6456 620 + . alignment_id 5 ; Query gi|805825625|ref|XP_012152697.1| ; Align 2871 117 114 ; Align 3391 155 123 ; Align 3514 197 192 ; Align 3706 262 9 ; Align 4172 265 276 ; Align 6418 357 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 406 Query range: 154 -> 375 Target range: 10831 -> 13161 155 : ValLeuSerLeuTyrGlnCysAspValGlyTyrIleCysPheAspAsnIlePheCysVal : 174 :!!! !.!!|||||| ! :!! !!|||.!!|||||||||||||||||||||:!! IleSerGlyLeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIle 10832 : ATTTCAGGACTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATC : 10889 175 : MetCysLeuHisSerAlaGlyGlnPheArgIleLeuGlnTyrArgLeuLysAsnValHis : 194 ||| !!:!!|||! !::!||||||||||||||||||||||||||||||! !!!.:!! ! MetSerValHisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSer 10890 : ATGAGCGTGCATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCC : 10949 195 : GlnLeuAlaSerLys<->HisGluAspAsnSerAsnAsnSerAlaSerTyrPheSerTyr : 213 .!.:!! !! !:!! ||| ||| ...::! ! !..! !!! !!!! ! AspValGlnTyrGlnIleSerGluLysAsnMetGluSerValLeuGluAspCysThrArg 10950 : GACGTACAATATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGT : 11009 214 : LysCysPheValValPheLysAspCysValArgGlnHisGlnIleIleIleAlaPheCys : 233 !:!! !!:!! ! !||||||..!! !|||||||||||||||! :!:|||! !!:!! ! ArgSerTyrGluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyr 11010 : AGATCTTACGAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTAC : 11069 234 : LysLeuPheGluGluValPheLysValIleValLeuCysGlnValIleMetPheSerMet : 253 :!! !.!!|||.!.|||!:!! ! !|||:!!||| ! ||||||:!!:!!||||||:!! GluLysLeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerVal 11070 : GAGAAGCTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTG : 11129 254 : LeuValCysLeuValGlyTyrGlnIlePheLeuValAspLeuAsnLeu<->Pro{M} > : 271 |||:!!|||||| !!||||||||||||!!.||||||..!:!!:::||| |||{!} LeuIleCysLeuPheGlyTyrGlnIleLeuLeuValSerIleSerLeuProPro{A}-+ 11130 : TTAATTTGCCTCTTTGGTTATCAGATATTATTGGTTAGTATTTCACTTCCTCCA{A}ct. : 11189 272 : >>> Target Intron 1 >>>> {et}ArgValSerLeuThrSerPheIleIleSer : 281 1302 bp { !}||| !! !!!!! !! !.!!||| !.!! +-{rg}ArgSerIlePheMetPheLeuIleCysGly 11190 : ........................aa{GG}CGCAGTATTTTCATGTTCCTCATATGTGGC : 12518 282 : AsnLeuCysGlnLeuTrpValPheThrTyrSerCysAspThrMetThrArgGluSerLeu : 301 !:!! ! !|||!:::!!|||||||||||||||:!!! !:!!! !..!:!!||| ! AlaMetValLeuLeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAsp 12519 : GCCATGGTTTTATTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGAT : 12578 302 : SerValGlyThrAlaMetTyrGluAlaProTrpProGlnLeuProThrAspLysPheGly : 321 !:!:!!!.! !||| !|||..!|||! !||| !! :!!|||! !:!!||| !||| AsnIleAlaPheAlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGly 12579 : AATATTGCTTTTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGC : 12638 322 : LysMetIleArgLysAspMetGlnIleValIleMetArgSerLysArgGlyCysHisIle : 341 |||! !:!!||| ! |||:!! !!!:|||||| !||||||!:!|||! !||| !:!: LysLysLeuArgHisAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeu 12639 : AAAAAGCTACGGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTG : 12698 342 : ThrAlaCysGlyPhePheProIleSerLeuGluThrTyrThr--{L} >>>> Target : 356 |||||| !||||||||||||:!:||||||||||||||||||##{:} 3 ThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThr##{G}++ 12699 : ACTGCGAATGGATTTTTCCCTGTGTCCTTAGAAACTTATACTAC{G}gt........... : 12748 357 : Intron 2 >>>> {ys}IleMetSerThrAlaMetSerTyrPheThrLeuLeuLysG : 370 57 bp {!!}|||:::||||||||| !||||||||||||||||||!:!. +-{lu}IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgA 12749 : ..............ac{ag}attttgAGTACCGCGGCGTCGTACTTCACATTATTGAGAA : 13144 371 : lySerThrIleAspVal : 375 .!!:!..! !|||||| snAsnValGluAspVal 13145 : ATAACGTAGAAGATGTA : 13161 vulgar: gi|805825625|ref|XP_012152697.1| 154 375 . KQ414828.1 10831 13161 + 406 M 45 135 G 0 3 M 70 210 G 0 3 M 1 3 S 0 1 5 0 2 I 0 1298 3 0 2 S 1 2 M 84 252 F 0 2 S 0 1 5 0 2 I 0 353 3 0 2 S 1 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10832 13161 406 + . gene_id 6 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 10832 11186 . + . KQ414828.1 exonerate:protein2genome:local exon 10832 11186 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 11187 11188 . + . intron_id 1 ; splice_site "CT" KQ414828.1 exonerate:protein2genome:local intron 11187 12488 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12487 12488 . + . intron_id 0 ; splice_site "AA" KQ414828.1 exonerate:protein2genome:local cds 12489 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12489 12745 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13102 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13101 13102 . + . intron_id 1 ; splice_site "ac" KQ414828.1 exonerate:protein2genome:local cds 13103 13161 . + . KQ414828.1 exonerate:protein2genome:local exon 13103 13161 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10832 13161 406 + . alignment_id 6 ; Query gi|805825625|ref|XP_012152697.1| ; Align 10832 155 135 ; Align 10970 200 210 ; Align 11183 270 3 ; Align 12491 272 252 ; Align 13105 357 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 389 Query range: 0 -> 159 Target range: 31105 -> 32512 1 : MetGlyMetGluTyrThrSerAspIleAlaValArgLeuThrIlePheTyrLeuLysVal : 20 |||.!!:!!:!!||| !..!|||:!!:!! !!||||||.!!! !|||!:!||| ! ||| MetSerLeuLysTyrArgGlnAspValSerPheArgLeuAlaAsnPhePheLeuTyrVal 31106 : ATGAGCTTGAAATATCGTCAAGACGTTTCCTTTAGATTAGCCAACTTTTTTCTGTATGTT : 31163 21 : ValGlyPheTrpPheAlaAlaAsnArgLeuGlnGlnLeuPheArgCysLeuThrValIle : 40 |||||||||||||||||||||||||||:!!:!!:!!! !|||||| ! !.!!:!!:!: ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeu 31164 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCTGCGATTCTG : 31223 41 : TyrThrIleValMetSerValPheAlaLeuTrpIleGlnSerMetGlyIleTyrTyrCys : 60 ||||||||||||! ! ! !!|||!.!:!!|||:!!||| !! |||:!!|||!:!! ! TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSer 31224 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGGCTTTATTTCTCC : 31283 61 : TrpGlyAspTyr<->Thr{M} >>>> Target Intron 1 >>>> {et}CysThr : 68 ||||||:!!!:! ..!{!} 667 bp {!:}|||! ! TrpGlyAsnPheGluVal{I}++ -+{le}CysMet 31284 : TGGGGAAACTTTGAAGTA{A}gt.........................gg{TT}TGCATG : 31977 69 : TyrIlePheValAsnIleLeuGlyIleAlaIleSerLeuLeuLysLeuCysLeuLeuLeu : 88 |||!!: !|||! !:!!!.!:!:!.!:!:..!:!!:!!|||:!!! !:!!|||:!! TyrMetAlaCysAsnSerIleAlaLeuValLeuAspIleIleLysIlePheValLeuVal 31978 : TACATGGCATGCAACAGTATAGCCCTGGTTTTGGATATAATCAAGATTTTCGTCCTAGTC : 32037 89 : ValGlnLysGluLysPheLeuArgLeuIleGluPheMetGlnArgAsnPheTrpHisSer : 108 |||!:!|||:!!||||||||| !!|||||||||!:!||||||:::||||||:::||| ValArgLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPhePheHisLeu 32038 : GTACGGAAGAAAAAGTTTCTCGGTCTGATTGAGTACATgcagaagaatttctttcatttg : 32097 109 : AsnTyrSerGlnLysGluIleLysIlePheAla{V} >>>> Target Intron 2 > : 120 ||||||..!||| ! |||! !...|||.!!|||{ } 260 bp AsnTyrAspGlnAspGluAsnSerIleIleAla{P}-- 32098 : aaCTACGATCAGGACGAGAATTCTATTATCGCA{C}ac...................... : 32136 121 : >>> {al}AsnIleGlyLysAsnGluSerGluArgValLeuLeuPheHisMetTrpLeu : 137 { !}|||:!!|||||||||||||||!!:|||! !! !:!!!:! !!||||||||| ++{ro}AsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 32137 : ...ag{ca}AATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 32444 138 : AspLeuProLeuSerThrThrProTyrPheGluIleMetTyrValLeuGlnValLeuSer : 157 |||||||||||||||..!|||||||||:::|||||| |||:!!:!!||||||||| !! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 32445 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 32504 158 : LeuTyr : 159 :!!!:! IlePhe 32505 : ATTTTC : 32512 vulgar: gi|805825625|ref|XP_012152697.1| 0 159 . KQ414828.1 31105 32512 + 389 M 64 192 G 0 3 M 1 3 S 0 1 5 0 2 I 0 663 3 0 2 S 1 2 M 53 159 S 0 1 5 0 2 I 0 256 3 0 2 S 1 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31106 32512 389 + . gene_id 7 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 31106 31304 . + . KQ414828.1 exonerate:protein2genome:local exon 31106 31304 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 31305 31306 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 31305 31971 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 31970 31971 . + . intron_id 0 ; splice_site "gG" KQ414828.1 exonerate:protein2genome:local cds 31972 32133 . + . KQ414828.1 exonerate:protein2genome:local exon 31972 32133 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32134 32135 . + . intron_id 2 ; splice_site "AC" KQ414828.1 exonerate:protein2genome:local intron 32134 32393 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 32392 32393 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 32394 32512 . + . KQ414828.1 exonerate:protein2genome:local exon 32394 32512 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31106 32512 389 + . alignment_id 7 ; Query gi|805825625|ref|XP_012152697.1| ; Align 31106 1 192 ; Align 31301 65 3 ; Align 31974 67 159 ; Align 32396 121 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 328 Query range: 0 -> 119 Target range: 26060 -> 27086 1 : MetGlyMetGluTyrThrSerAspIleAlaValArgLeuThrIlePheTyrLeuLysVal : 20 |||.!!:!!:!!||| !..!|||:!!:!!|||||||||.!!! !|||!:!||| ! ||| MetSerLeuLysTyrArgGlnAspValSerValArgLeuAlaAsnPhePheLeuTyrVal 26061 : ATGAGCTTGAAATATCGTCAAGACGTTTCCGTTAGATTAGCCAACTTTTTTCTGTATGTC : 26118 21 : ValGlyPheTrpPheAlaAlaAsnArgLeuGlnGlnLeuPheArgCysLeuThrValIle : 40 |||||||||||||||||||||||||||:!!:!!:!!! !|||||| ! !.!!:!!:!: ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeu 26119 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCGGCGATTCTG : 26178 41 : TyrThrIleValMetSerValPheAlaLeuTrpIleGlnSerMetGlyIleTyrTyrCys : 60 ||||||||||||! ! ! !!|||!.!:!!|||:!!||| ! |||:!!|||!:!..! TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuGlyGlyLeuTyrPheAla 26179 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGGGAGGGCTTTATTTCGCC : 26238 61 : TrpGlyAspTyrThr >>>> Target Intron 1 >>>> MetCysThrTyrIleP : 71 ||||||:!!!:! ! 669 bp :!:|||! !|||!!: TrpGlyAsnPheGlu++ ++ValCysMetTyrMetA 26239 : TGGGGAAACTTTGAAgt.........................agGTTTGCATGTACATGG : 26940 72 : heValAsnIleLeuGlyIleAlaIleSerLeuLeuLysLeuCysLeuLeuLeuValGlnL : 91 !! !||| !|||!.!!!:!.!:!:..!:!!:!!|||:!!! ! !|||:!!|||!!.| laGlyAsnGlyLeuAlaMetValLeuAspIleIleLysIlePheThrLeuValValHisL 26941 : CTGGCAACGGTTTAGCCATGGTTTTGGATATAATCAAGATTTTCACCCTAGTCGTACACA : 27000 92 : ysGluLysPheLeuArgLeuIleGluPheMetGlnArgAsnPheTrpHisSerAsnTyrS : 111 ||:!!||||||||| !!|||||||||!:!||||||!:!||||||||||||! !||||||. ysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheTrpHisLeuAsnTyrA 27001 : AGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTTTGGCATTTGAACTACG : 27060 112 : erGlnLysGluIleLysIlePheAla : 119 .!||| ! |||! !...:!!!!.||| spGlnTyrGluAsnSerValLeuAla 27061 : ATCAGTACGAGAATTCTGTTTTGGCA : 27086 vulgar: gi|805825625|ref|XP_012152697.1| 0 119 . KQ414828.1 26060 27086 + 328 M 65 195 5 0 2 I 0 665 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26061 27086 328 + . gene_id 8 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 26061 26255 . + . KQ414828.1 exonerate:protein2genome:local exon 26061 26255 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 26256 26257 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 26256 26924 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 26923 26924 . + . intron_id 0 ; splice_site "aG" KQ414828.1 exonerate:protein2genome:local cds 26925 27086 . + . KQ414828.1 exonerate:protein2genome:local exon 26925 27086 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 26061 27086 328 + . alignment_id 8 ; Query gi|805825625|ref|XP_012152697.1| ; Align 26061 1 195 ; Align 26925 66 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 282 Query range: 266 -> 357 Target range: 28511 -> 28784 267 : LeuAsnLeuProMetArgValSerLeuThrSerPheIleIleSerAsnLeuCysGlnLeu : 286 |||:::!!! ! !||||||:!!|||.!!!!!||| !!:!!!..!:!! !!|||||| LeuSerPheGluTrpArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeu 28512 : TTATCATTTGAATGGCGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTA : 28569 287 : TrpValPheThrTyrSerCysAspThrMetThrArgGluSerLeuSerValGlyThrAla : 306 |||:!!|||||||||||||||||| !!!:|||! !|||||||||!:!:!!!.! !:!! TrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSer 28570 : TGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCT : 28629 307 : MetTyrGluAlaProTrpProGlnLeuProThrAspLysPheGlyLysMetIleArgLys : 326 :!:|||! !.!|||||| !.!.||||||! |||||||||||||||::::!!|||||| ValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLys 28630 : GTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAA : 28689 327 : AspMetGlnIleValIleMetArgSerLysArgGlyCysHisIleThrAlaCysGlyPhe : 346 |||:!:|||:!::!!|||:!!|||:!!!:!||| !! ! !:!:||||||||||||||| AspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThrAlaCysGlyPhe 28690 : GATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGATTC : 28749 347 : PheProIleSerLeuGluThrTyrThrLysIle : 357 ||| !!|||||||||||||||!:!||||||:!! PheSerIleSerLeuGluThrPheThrLysVal 28750 : TTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 28784 vulgar: gi|805825625|ref|XP_012152697.1| 266 357 . KQ414828.1 28511 28784 + 282 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28512 28784 282 + . gene_id 9 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28512 28784 . + . KQ414828.1 exonerate:protein2genome:local exon 28512 28784 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28512 28784 282 + . alignment_id 9 ; Query gi|805825625|ref|XP_012152697.1| ; Align 28512 267 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 5 -> 64 Target range: 15115 -> 15292 6 : ThrSerAspIleAlaValArgLeuThrIlePheTyrLeuLysValValGlyPheTrpPhe : 25 |||..!||||||:!!:!!!!!|||||| ! !!!:!:!!|||:!!||||||.!.|||.!. ThrAspAspIleSerIleSerLeuThrSerValPheMetLysIleValGlyLeuTrpMet 15116 : ACCGATGACATATCAATCAGCCTGACGTCCGTTTTCATGAAGATCGTTGGACTGTGGATG : 15173 26 : AlaAlaAsnArgLeuGlnGlnLeuPheArgCysLeuThrValIleTyrThrIleValMet : 45 |||:!!||||||!!!:!!|||! ! ! ||| !:!!|||:!! !||||||:!::!! ! AlaSerAsnArgPheGluGlnArgValArgAsnIleThrLeuCysTyrThrLeuIleAla 15174 : GCGTCGAACCGTTTCGAGCAACGAGTACGAAATATCACGCTGTGTTACACGCTGATCGCG : 15233 46 : SerValPheAlaLeuTrpIleGlnSerMetGlyIleTyrTyrCysTrpGlyAspTyr : 64 ! !:!!||||||||||||||||||! !! !! !:!:||||||! |||||||||!:! IleLeuPheAlaLeuTrpIleGlnMetThrAspLeuTyrTyrSerTrpGlyAspPhe 15234 : ATTCTCTTCGCCCTGTGGATACAAATGACGGATTTGTATTACTCGTGGGGAGATTTT : 15292 vulgar: gi|805825625|ref|XP_012152697.1| 5 64 . KQ414828.1 15115 15292 + 174 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15116 15292 174 + . gene_id 10 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 15116 15292 . + . KQ414828.1 exonerate:protein2genome:local exon 15116 15292 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15116 15292 174 + . alignment_id 10 ; Query gi|805825625|ref|XP_012152697.1| ; Align 15116 6 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 119 -> 166 Target range: 27345 -> 27486 120 : ValAsnIleGlyLysAsnGluSerGluArgValLeuLeuPheHisMetTrpLeuAspLeu : 139 ...|||:!!|||||||||||||||!!:|||! !! !:!!||| !!||||||!!!|||||| AlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPheAspLeu 27346 : gcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTCGATCTA : 27403 140 : ProLeuSerThrThrProTyrPheGluIleMetTyrValLeuGlnValLeuSerLeuTyr : 159 |||||||||..!|||||||||:::|||||| |||:!!:!!||||||||| !!:!!!:! ProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuProIlePhe 27404 : CCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCAATTTTC : 27463 160 : GlnCysAspValGlyTyrIle : 166 ..! ! :::... :::||| SerArgGluThrIlePheIle 27464 : TCAAGggaaacaatatttata : 27486 vulgar: gi|805825625|ref|XP_012152697.1| 119 166 . KQ414828.1 27345 27486 + 145 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27346 27486 145 + . gene_id 11 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27346 27486 . + . KQ414828.1 exonerate:protein2genome:local exon 27346 27486 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27346 27486 145 + . alignment_id 11 ; Query gi|805825625|ref|XP_012152697.1| ; Align 27346 120 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 7 -> 66 Target range: 727 -> 904 8 : AspIleAlaValArgLeuThrIlePheTyrLeuLysValValGlyPheTrpPheAlaAlaAsnA : 29 ||||||||||||! !:!!||| !||||||||||||:!!:!!|||||||||!!.|||! !!.! AspIleAlaValThrValThrAlaPheTyrLeuLysIleIleGlyPheTrpLeuAlaAspThrT 728 : GACATAGCGGTGACCGTTACGGCTTTCTACTTGAAAATTATCGGCTTCTGGTTAGCTGACACTT : 791 30 : rgLeuGlnGlnLeuPheArgCysLeuThrValIleTyrThrIleValMetSerValPheAlaLe : 50 ! !:!!:!: ||| ...... !! !!:!|||||| !!||| !|||! !|||:! yrGluGluLysArgArgArgLysPheAlaGlnAsnPheThrIlePheMetLeuValCysAlaVa 792 : ACGAGGAGAAacgtcgaagaaaattcgcgcAGAATTTCACGATATTTATGCTGGTGTGCGCTGT : 854 51 : uTrpIleGlnSerMetGlyIleTyrTyrCysTrpGlyAspTyrThrMet : 66 ! |||:!!!!!! !! !||||||||| !|||||||||!:!!:!:!: lValIleGluThrArgAspIleTyrTyrThrTrpGlyAspPheSerVal 855 : GGTAATTGAGACGAGGGATATCTATTACACCTGGGGTGATTTCAGCGTA : 904 vulgar: gi|805825625|ref|XP_012152697.1| 7 66 . KQ414828.1 727 904 + 133 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 728 904 133 + . gene_id 12 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 728 904 . + . KQ414828.1 exonerate:protein2genome:local exon 728 904 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 728 904 133 + . alignment_id 12 ; Query gi|805825625|ref|XP_012152697.1| ; Align 728 8 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 158 Query range: 129 -> 216 Target range: 1243860 -> 1243599 130 : SerIleSerPheCysAlaPheMetPheValLeuLeuProThrIleProProIleLe : 148 !!!:!:! !!:!! !:!!.!.!!:|||||||||!!!||| !|||||||||||||| ThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleLe 1243860 : ACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATT : 1243806 149 : uAsnValValAlaProLeuAsnGluSerArgSerArgGluPheIleTyrProSerT : 167 |:!!||||||:!!||||||||||||!!!||||||||| ! ::: uAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuG 1243805 : GGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgc : 1243749 168 : yrTyrPheValAspGluGlnGlnTyrTyrTyrProIleLeuValHisMetIleSer : 185 |||.!. !!||| :::::: :::||| ::: |||:!!! !!!! lnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrp 1243748 : aataccTGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGCTGG : 1243695 186 : ValAlaValIleLeuThrSerValTyrIleAlaCysAspIleAsnLeuValHisVa : 204 !:!! !!!!: !! !! !||| |||.!! ||| ! !||| :! CysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValValIl 1243694 : TGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAAT : 1243638 205 : lValHisHisGlyCysAlaLeuLeuAlaIleSerGly : 216 !:!!|||||| !|||!.!|||!!!|||:!!!!!||| eIleHisHisThrCysGlyLeuPheAlaValCysGly 1243637 : CATTCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: gi|350396218|ref|XP_003484482.1| 129 216 . KQ414851.1 1243860 1243599 - 158 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243860 158 - . gene_id 1 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243860 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243860 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243860 158 - . alignment_id 1 ; Query gi|350396218|ref|XP_003484482.1| ; Align 1243861 130 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 154 Query range: 125 -> 216 Target range: 1224300 -> 1224024 126 : LeuTyrGlnValSerIleSerPheCysAlaPheMetPheValLeuLeuProThrIl : 144 ::::::... |||:!:!!!.!. ! !!!.:!:!:!:!! !!!!||| !|| IlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLeuIl 1224300 : attttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGAT : 1224246 145 : eProProIleLeuAsnValValAlaProLeuAsnGluSerArgSerArgGluPheI : 163 | !|||:!!|||:!!|||||||||||||||||||||!!!||| !!|||..!.!!: eAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLeuL 1224245 : AAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTT : 1224189 164 : leTyrPro<->SerTyrTyrPheValAspGluGlnGlnTyrTyrTyrProIleLeu : 180 !: !||| |||||| |||:!!|||||| ! :!!:!!!:!||| !:!: ! euLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValAsn 1224188 : TGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAAT : 1224135 181 : ValHisMetIleSerValAlaValIleLeuThrSerValTyrIleAlaCysAspIl : 199 !!|||:!: !!!! !!.!:!! !! ! !! !:!! |||||| |||!! PheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAspMe 1224134 : TTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATAT : 1224078 200 : eAsnLeuValHisValValHisHisGlyCysAlaLeuLeuAlaIleSerGly : 216 : ! !:!! !:!!:!! !||| !|||!.!|||!!!|||:!:!!!||| tLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaValCysGly 1224077 : GTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: gi|350396218|ref|XP_003484482.1| 125 216 . KQ414851.1 1224300 1224024 - 154 M 40 120 G 0 3 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224300 154 - . gene_id 2 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224300 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224300 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224300 154 - . alignment_id 2 ; Query gi|350396218|ref|XP_003484482.1| ; Align 1224301 126 120 ; Align 1224178 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 129 Query range: 135 -> 221 Target range: 1240067 -> 1239806 136 : PheMetPheValLeuLeuProThrIleProProIleLeuAsnValValAlaProLe : 154 |||:::|||::::!!:!!||| ...||||||:::|||:!!:!!:!! !||||| PheIlePheLeuValValProIlePheProProLeuLeuAspIleLeuLysProLe 1240067 : ttcatttttctggTGGTTCcgatttttcctcctcttctggACATTTTAAAACCTTT : 1240013 155 : uAsnGluSerArgSerArgGluPheIleTyrPro<->SerTyrTyrPheValAspG : 172 |||||||!!!|||:!!|||::: |||::: ::!||| .!!:!!|||. uAsnGluThrArgAlaArgGlnLysIlePheLysValAsnTyrLeuIleIleAspA 1240012 : AAACGAAACCCGAGCACgccagaaaatattcaaagttaaTTACCTGATCATTGACA : 1239956 173 : luGlnGlnTyrTyrTyrProIleLeuValHisMetIleSerValAlaValIleLeu : 190 .!.!.:!! ! ! !! !! ! !!|||:!! !!!!..!.!!:!!! !||| rgAspGluGlnAlaLeuIleThrTyrPheHisLeuSerTrpThrThrIleThrLeu 1239955 : GGGATGAACAAGCTCTGATCACATATTTTCACTTGTCTTGGACAACTATCACTCTT : 1239902 191 : ThrSerValTyrIleAlaCysAspIleAsnLeuValHisValValHisHisGlyCy : 209 !! ! ! :!!::!! !!::!:! ! !|||! !:!!:!!|||||| ! ! GlyIleSerValLeuSerSerGluLeuIleTyrValLeuLeuIleHisHisThrSe 1239901 : GGGATATCTGTGCTTAGCTCAGAATTGATATACGTCCTTCTTATTCATCATACCAG : 1239845 210 : sAlaLeuLeuAlaIleSerGlyTyrArgPheLysHis : 221 !!.!|||!!!|||:!::!!||| ||||||||| rGlyLeuPheAlaValAlaGly***IlePheLysHis 1239844 : CGGTCTGTTTGCTGTGGCTGggtaaatattcaaacat : 1239807 vulgar: gi|350396218|ref|XP_003484482.1| 135 221 . KQ414851.1 1240067 1239806 - 129 M 30 90 G 0 3 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239807 1240067 129 - . gene_id 3 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239807 1240067 . - . KQ414851.1 exonerate:protein2genome:local exon 1239807 1240067 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239807 1240067 129 - . alignment_id 3 ; Query gi|350396218|ref|XP_003484482.1| ; Align 1240068 136 90 ; Align 1239975 166 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 136 -> 216 Target range: 1234302 -> 1234059 137 : MetPheValLeuLeuProThrIleProProIleLeuAsnValValAlaProLeuAs : 155 :!:|||:!!|||:!!||| !:!! !|||.!!|||:!!|||||| !|||||||| ValPheLeuLeuValProLeuValPheProPheLeuAspValValLeuProLeuAs 1234302 : GTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGTCGTCCTTCCGTTAAA : 1234248 156 : nGluSerArgSerArgGluPheIleTyr<->ProSerTyrTyrPheValAspGluG : 173 ||||!!!||| !!|||:!! !!:! !!:!||| !:! !!|||||| nGluThrArgProArgGlnGlnGlyPheArgValAsnTyrLeuTyrPheAspGluA 1234247 : TGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTATATTTCGACGAAG : 1234191 174 : lnGlnTyrTyrTyrProIleLeuValHisMetIleSerValAlaValIleLeuThr : 191 !.!.|||!:!!:! !:!:! ! !!!!.:!! !!!!! !||||||:!!:!!..! laAspTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaValValValVal 1234190 : CGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTC : 1234137 192 : SerValTyrIleAlaCysAspIleAsnLeuValHisValValHisHisGlyCysAl : 210 ! !:!! |||.!! ||| ! !:!! :!!:!!||||||!.! !!!. MetIleIleIleThrValAspSerLeuTyrMetIleIleIleHisHisAlaSerGl 1234136 : ATGATCATAATCACCGTAGACTCGTTGTACATGATAATAATTCACCATGCCAGCGG : 1234080 211 : aLeuLeuAlaIleSerGly : 216 !:!!!!!|||:!:!!!||| yMetPheAlaValCysGly 1234079 : AATGTTCGCCGTGTGCGGG : 1234060 vulgar: gi|350396218|ref|XP_003484482.1| 136 216 . KQ414851.1 1234302 1234059 - 123 M 28 84 G 0 3 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234302 123 - . gene_id 4 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234302 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234302 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234302 123 - . alignment_id 4 ; Query gi|350396218|ref|XP_003484482.1| ; Align 1234303 137 84 ; Align 1234216 165 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350399566|ref|XP_003485570.1| PREDICTED: uncharacterized protein LOC100741772 [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 524 Query range: 5 -> 187 Target range: 1234806 -> 1234059 6 : ValValThrSerIleAlaSerIleThrIleProThrThrIleGluLeuPheAlaSe : 24 ||||||! ! !!! ! !..!||| !:!!! ! ! !||||||:!!!:!!.!.. ValValLysProLysLeuGluIleGlyValGln***PheIleGluIleTyrValGl 1234806 : GTTGTTAAACCTAAACTGGAAATTGGGGTTCAATAGTTTATCGAGATATATGTACA : 1234752 25 : rLeuHisAsnLysAspMetAspGlyValIleGluCysLeuProHisPheIleAlaS : 43 !||| !.!.|||:!!||||||!.!||||||||||||||||||:!! !||||||: nLeuCysGluLysAsnMetAspAlaValIleGluCysLeuProAsnGlyIleAlaA 1234751 : ACTTTGTGAGAAGAATATGGACGCAGTGATCGAGTGTTTGCCGAATGGTATCGCAG : 1234695 44 : erSerIleSerAlaValLysIleLeuAsnMetHisPheAsnArgGlnAsn >>>> : 60 !!:!!! !|||!.!||||||:!:||||||:!::!!!!.||||||:!!||| laAlaThrSerValValLysLeuLeuAsnValTyrLeuAsnArgGluAsn++ 1234694 : CCGCGACCAGCGTGGTGAAATTGTTGAACGTTTACTTAAACAGGGAAAATgt.... : 1234642 61 : Target Intron 1 >>>> PheHisLysLeuPheGlnLeuValAlaArgHis : 70 75 bp |||...|||::::::...||||||.!!|||.!. ++PheGlnLysMetTyrAspLeuValThrArgGlu 1234641 : .....................agtttcaaaaaatgtatgaTCTTGTGACAAGAGAG : 1234539 71 : TrpGlnGluLeuLysLeuAsnGlyGluLeuHisValLeuGluGluIleValMetGl : 89 |||:!!:!!|||!:!:!!|||! !||||||||||||||||||!!:|||..!||||| TrpGluGlnLeuArgMetAsnAspGluLeuHisValLeuGluAspIleThrMetGl 1234538 : TGGGAGCAGTTGAGGATGAACGACGAGTTGCATGTGCTTGAAGACATTACCATGCA : 1234482 90 : nGlyAsnArgMetAlaLeuPheTyrArg{S} >>>> Target Intron 2 >> : 99 ||||..!!:!:!:|||! !|||||||||{!} 126 bp nGlyGlyLysLeuAlaGlnPheTyrArg{A}++ 1234481 : AGGTGGTAAACTCGCGCAATTCTACAGA{A}gt....................... : 1234449 100 : >> {er}ThrLeuLeuSerPheMetGlyLeuPheLeuLeuValProLeuIleSer : 115 {:!}||||||||||||||||||! !:!!||||||||||||||||||:!!! ! ++{sn}ThrLeuLeuSerPheMetValValPheLeuLeuValProLeuValPhe 1234448 : ..ag{AT}ACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTT : 1234278 116 : ProIleLeuAspIleValHisProIleAsnGlyThrArgThrArgGlnGlnLeuLe : 134 |||.!!||||||:!!|||! !|||:!!|||! !|||||| !!||||||||| !!! ProPheLeuAspValValLeuProLeuAsnGluThrArgProArgGlnGlnGlyPh 1234277 : CCATTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAGGATT : 1234221 135 : uArgValAsnTyrIlePhePheAspAspAspAspTyrPhePheTyrIleTyrLeuG : 153 !||||||||||||:!!!:!||||||!!:! |||||||||||| !:!:|||!!!| eArgValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyrPheG 1234220 : CAGAGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTC : 1234164 154 : lnLeuPheCysGlyAlaAlaValValValTyrThrIleIleGlyAlaAspTrpLeu : 171 ||||| !!! ||||||!.!||||||||| ! !|||||| !!.!|||! !||| lnLeuAlaTrpGlyAlaValValValValMetIleIleIleThrValAspSerLeu 1234163 : AATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTCGTTG : 1234110 172 : TyrMetLeuIleIleHisHisSerSerGlyLeuPheAlaValCysGly : 187 ||||||:!!||||||||||||:!!||||||:!!||||||||||||||| TyrMetIleIleIleHisHisAlaSerGlyMetPheAlaValCysGly 1234109 : TACATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTGTGCGGG : 1234060 vulgar: gi|350399566|ref|XP_003485570.1| 5 187 . KQ414851.1 1234806 1234059 - 524 M 54 162 5 0 2 I 0 71 3 0 2 M 39 117 S 0 1 5 0 2 I 0 122 3 0 2 S 1 2 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234806 524 - . gene_id 1 ; sequence gi|350399566|ref|XP_003485570.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1234645 1234806 . - . KQ414851.1 exonerate:protein2genome:local exon 1234645 1234806 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234643 1234644 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1234570 1234644 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1234570 1234571 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1234452 1234569 . - . KQ414851.1 exonerate:protein2genome:local exon 1234452 1234569 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234450 1234451 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1234326 1234451 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1234326 1234327 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1234060 1234325 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234325 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234806 524 - . alignment_id 1 ; Query gi|350399566|ref|XP_003485570.1| ; Align 1234807 6 162 ; Align 1234570 60 117 ; Align 1234324 100 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350399566|ref|XP_003485570.1| PREDICTED: uncharacterized protein LOC100741772 [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 473 Query range: 91 -> 346 Target range: 1224312 -> 1222373 92 : ArgMetAlaLeuPheTyrArgSerThrLeuLeuSerPheMetGlyLeuPheLeuLe : 110 |||... |||...::: ...:!!|||! !! ! !!:!! !:!!!:!:!! ArgGlnLysLeuIlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSe 1224312 : agacaaaaattaattttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAG : 1224258 111 : uValProLeuIleSerProIleLeuAspIleValHisProIleAsnGlyThrArgT : 129 ! !!|||||||||!:!|||:!!||||||:!!||| |||:!!|||! !|||||| rPheProLeuIleAsnProValLeuAspValValAlaProLeuAsnGluThrArgP 1224257 : CTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGAC : 1224201 130 : hrArgGlnGlnLeuLeuArgValAsnTyrIlePhePheAspAspAspAspTyrPhe : 147 !!|||::!! ||||||! !|||!:!|||||||||.!.|||!!: !!!!::!!||| roArgArgLeuLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPhe 1224200 : CCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTT : 1224147 148 : PheTyrIleTyrLeuGlnLeuPheCysGlyAlaAlaValValValTyrThrIleIl : 166 !:! !:!: !!!!!!!.|||!:! !.!!!.! ! ! !! ! ! !||||| TyrSerValAsnPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIl 1224146 : TATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAAT : 1224090 167 : eGlyAlaAspTrpLeuTyrMetLeuIleIleHisHisSerSerGlyLeuPheAlaV : 185 |!.!!.!||| !||||||!!: !|||||| !||| !!!!||||||||||||| eAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaV 1224089 : CGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAG : 1224033 186 : alCys{Gl} >>>> Target Intron 1 >>>> {y}HisArgValGlnLys : 192 |||||{||} 450 bp {|} ! !..!||| alCys{Gl}++ +-{y}ThrPheArgSerLys 1224032 : TGTGT{GG}gt.........................aa{A}ACGTTCAGATCAAAA : 1223562 193 : AlaThrLeuAsnProAsnTyrPheThrAspGluAlaIleSerGluAsnTyrThrTy : 211 ! !:!!||| !!..! !.!.! ! !...!.!:!!||||||||| !:! MetAspValAsnTrpThrSerLeuArgArgArgValLeuSerGluAsn---SerMe 1223561 : ATGGACGTAAATTGGACATCTCTAAGACGTCGTGTGTTATCTGAGAAC---AGTAT : 1223508 212 : rGluLysIleArgAsnCysAlaIleMetHisAsnGluAlaIleArgPheSerAspI : 230 !!: ! :!:! !::: ! ...::: ... !|||!:!!!!.!.| tAspHisLeuThrSerIleAsnSerPheTyrTyrTyrValSerArgTyrCysGlnI 1223507 : GGATCATCTGACATCAATTAActcattttattattacgttTCAAGATACTGCCAGA : 1223451 231 : leLeuLysGluSerSerArgGlySerTyrLeuIleGlnValGlyLeuAsnMetLeu : 248 |||||:!!..!||||||!:! !! !|||||||||||||||||||||!:!:!!!!! leLeuGluArgSerSerGlnHisMetTyrLeuIleGlnValGlyLeuSerValPhe 1223450 : TTCTGGAAAGAAGTAGCCAACATATGTACCTGATTCAAGTAGGATTAAGCGTGTTC : 1223397 249 : GlyIleSerAlaThrAlaValGln >>>> Target Intron 2 >>>> Thr : 257 !||||||!.!||||||!.! ! 656 bp ! IleIleSerValThrAlaAlaAla++ ++Cys 1223396 : ATCATCAGCGTGACGGCTGCCGCAgt.........................agTGC : 1222714 258 : ValValAsnLeuAspArgProGluGluAlaMetArgSerAlaValPheCysGlyAl : 276 :!!:!!|||:!!|||||||||!!:||| !!!:||| !|||:!!||| !! !|| IleMetAsnIleAspArgProAspGluLeuIleArgLeuAlaMetPheValValAl 1222713 : ATTATGAACATCGACCGACCTGACGAACTCATCAGGCTTGCGATGTTTGTCGTAGc : 1222657 277 : aAsnGlnPheHisLeuPheLeuLeuSerLeuProGlyGlnValLeuLeuAspHisC : 295 |...:::|||||||||...:!!||||||||||||||||||:!!|||||||||||| aGlnLysPheHisLeuLeuIleLeuSerLeuProGlyGlnMetLeuLeuAspHisS 1222656 : tcagaaatttcatttgctcATCCTTAGTTTACCTGGGCAAATGTTGTTAGATCATA : 1222600 296 : ysSerAspLeuAlaAspAsn{Il} >>>> Target Intron 3 >>>> {e} : 302 !!! !! |||||||||! {||} 71 bp {|} erLeuGlyLeuAlaAspIle{Il}++ ++{e} 1222599 : GTTTAGGATTGGCCGATATA{AT}gt.........................ag{T} : 1222506 303 : TyrSerSerThrTrpTyrGlyThrProValGlnIleGlnLysValIleTyrValMe : 321 |||:!!|||! !||||||! ! !||||||:!! ||||||:!!||||||..!|| TyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTyrThrMe 1222505 : TACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTACACGAT : 1222451 322 : tGlnIleArgCysLysArgPheCysSerLeuThrAlaGlyGlyLeuTyrGluMetA : 340 ||||!!:|||! !! !||| |||! !|||||||||||||||:!!:!!||||||| tGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisGluMetA 1222450 : GCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATGAGATGA : 1222394 341 : snIleGluAsnPheGlyIle : 346 ||||||||!:!||||||||| snIleGluSerPheGlyIle 1222393 : ACATCGAGAGTTTCGGAATA : 1222374 vulgar: gi|350399566|ref|XP_003485570.1| 91 346 . KQ414851.1 1224312 1222373 - 473 M 95 285 S 0 2 5 0 2 I 0 446 3 0 2 S 1 1 M 21 63 G 1 0 M 47 141 5 0 2 I 0 652 3 0 2 M 45 135 S 0 2 5 0 2 I 0 67 3 0 2 S 1 1 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222374 1224312 473 - . gene_id 2 ; sequence gi|350399566|ref|XP_003485570.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1224026 1224312 . - . KQ414851.1 exonerate:protein2genome:local exon 1224026 1224312 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1224024 1224025 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1223576 1224025 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1223576 1223577 . - . intron_id 0 ; splice_site "AA" KQ414851.1 exonerate:protein2genome:local cds 1223371 1223575 . - . KQ414851.1 exonerate:protein2genome:local exon 1223371 1223575 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local splice5 1223369 1223370 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222715 1223370 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1222715 1222716 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222578 1222714 . - . KQ414851.1 exonerate:protein2genome:local exon 1222578 1222714 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1222576 1222577 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222507 1222577 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1222507 1222508 . - . intron_id 2 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222374 1222506 . - . KQ414851.1 exonerate:protein2genome:local exon 1222374 1222506 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222374 1224312 473 - . alignment_id 2 ; Query gi|350399566|ref|XP_003485570.1| ; Align 1224313 92 285 ; Align 1223575 188 63 ; Align 1223512 210 141 ; Align 1222715 257 135 ; Align 1222506 303 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350399566|ref|XP_003485570.1| PREDICTED: uncharacterized protein LOC100741772 [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 467 Query range: 225 -> 362 Target range: 1233762 -> 1233126 226 : ArgPheSerAspIleLeuLysGluSerSerArgGlySerTyrLeuIleGlnValGl : 244 ||||||! !|||||||||!!.||||||||||||..!|||||||||||||||||||| ArgPheTyrAspIleLeuAsnGluSerSerArgAsnSerTyrLeuIleGlnValGl 1233762 : AGGTTTTACGATATTCTAAACGAGAGCAGTCGAAATAGCTACTTGATTCAGGTTGG : 1233708 245 : yLeuAsnMetLeuGlyIleSerAlaThrAlaValGln >>>> Target Intro : 257 ||||||||||:!!|||||||||!.!|||||||||||| 80 bp yLeuAsnMetMetGlyIleSerValThrAlaValGln+- 1233707 : ATTGAACATGATGGGCATTAGCGTGACCGCTGTCCAGgc................. : 1233667 258 : n 1 >>>> ThrValValAsnLeuAspArgProGluGluAlaMetArgSerAlaV : 272 ||||||:!!!..||||||||||||! !||||||:!:|||!!!|||| ++ThrValLeuThrLeuAspArgProAlaGluAlaLeuArgCysAlaV 1233666 : ........agACAGTCCTCACACTGGACAGGCCGGCAGAAGCTCTTAGATGTGCTG : 1233544 273 : alPheCysGlyAlaAsnGlnPheHisLeuPheLeuLeuSerLeuProGlyGlnVal : 290 ||||| !! !|||.!.|||||||||||||||:!!:!!|||||||||||||||..! alPheLeuValAlaGluGlnPheHisLeuPheIleIleSerLeuProGlyGlnThr 1233543 : TGTTCCTTGTAGCGGAGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACA : 1233490 291 : LeuLeuAspHisCysSerAspLeuAlaAspAsn{Il} >>>> Target Intro : 302 |||:!!|||||||||!!! ! |||:!! ! :!!{||} 70 bp LeuValAspHisCysThrLysLeuSerLysAsp{Il}++ 1233489 : CTCGTGGATCATTGTACGAAACTATCGAAGGAT{AT}gt................. : 1233450 303 : n 2 >>>> {e}TyrSerSerThrTrpTyrGlyThrProValGlnIleGlnLysV : 317 {|}|||||||||||||||||| !..!|||!.!:!!.!!|||::!| ++{e}TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgV 1233449 : ........ag{A}TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAG : 1233339 318 : alIleTyrValMetGlnIleArgCysLysArgPheCysSerLeuThrAlaGlyGly : 335 ||||||||..!||||||||||||..! !!:! ||| !||||||||||||||| alIleTyrThrMetGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGly 1233338 : TAATTTACACGATGCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGA : 1233285 336 : LeuTyrGluMetAsnIleGluAsnPheGlyIle >>>> Target Intron 3 : 347 |||||||||||||||!!:|||||||||!.!! ! 75 bp LeuTyrGluMetAsnMetGluAsnPheAlaAsn++ 1233284 : TTGTATGAAATGAACATGGAGAACTTTGCAAACgt..................... : 1233247 348 : >>>> ThrPheLysThrCysMetSerTyrIleThrMetLeuMetSerLeuLys : 362 ||||||||||||||||||||||||.!!||||||||||||||||||!:! ++ThrPheLysThrCysMetSerTyrPheThrMetLeuMetSerLeuArg 1233246 : ....agaCATTCAAAACGTGCATGTCATACTTCACAATGCTGATGTCACTTAGA : 1233127 vulgar: gi|350399566|ref|XP_003485570.1| 225 362 . KQ414851.1 1233762 1233126 - 467 M 31 93 5 0 2 I 0 76 3 0 2 M 45 135 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 44 132 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233127 1233762 467 - . gene_id 3 ; sequence gi|350399566|ref|XP_003485570.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233670 1233762 . - . KQ414851.1 exonerate:protein2genome:local exon 1233670 1233762 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233668 1233669 . - . intron_id 1 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1233590 1233669 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233590 1233591 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233453 1233589 . - . KQ414851.1 exonerate:protein2genome:local exon 1233453 1233589 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233451 1233452 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233383 1233452 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1233383 1233384 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233250 1233382 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233382 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 2 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233127 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233127 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233127 1233762 467 - . alignment_id 3 ; Query gi|350399566|ref|XP_003485570.1| ; Align 1233763 226 93 ; Align 1233590 257 135 ; Align 1233382 303 132 ; Align 1233175 347 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350399566|ref|XP_003485570.1| PREDICTED: uncharacterized protein LOC100741772 [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 355 Query range: 228 -> 363 Target range: 1243167 -> 1242521 229 : AspIleLeuLysGluSerSerArgGlySerTyrLeuIleGlnValGlyLeuAsnMe : 247 |||! !:!!!!.|||! !!!!!!! !!!!||||||.!!||||||||||||||||| AspThrIleAsnGluIleThrSerThrCysTyrLeuPheGlnValGlyLeuAsnMe 1243167 : GATACCATAAACGAAATCACTAGCACATGTTACTTGTTTCAAGTCGGACTTAATAT : 1243113 248 : tLeuGlyIleSerAlaThrAlaValGln >>>> Target Intron 1 >>>> : 257 |:!!|||||||||!.!|||:!!|||! ! 77 bp tIleGlyIleSerValThrSerValLeu++ + 1243112 : GATCGGTATTAGCGTGACGTCTGTTCTAgt.........................a : 1243008 258 : ThrValValAsnLeuAspArgProGluGluAlaMetArgSerAlaValPheCysG : 275 .!! !!:!!||||||||||||||||||||| ! |||! !||| !||| ! +AlaPheIleAsnLeuAspArgProGluGluPheAlaArgIleAlaCysPheLeuI 1243007 : gGCCTTTATAAATCTAGATCGGCCTGAAGAATTTGCCAGAATTGCTTGTTTCCTTA : 1242952 276 : lyAlaAsnGlnPheHisLeuPheLeuLeuSerLeuProGlyGlnValLeuLeuAsp : 293 !|||.!.|||.!!||||||!!.:!!:!!|||:!!|||||||||:!!:!! !||| leAlaGlnGlnLeuHisLeuLeuValIleSerValProGlyGlnIleIleThrAsp 1242951 : TAGCTCAGCAACTCCACTTGTTAGTCATTAGTGTACCAGGGCAGATCATCACGGAT : 1242898 294 : HisCysSerAspLeuAlaAspAsn{Il} >>>> Target Intron 2 >>>> : 302 !!. !!||| ! |||.!! !:!!{||} 72 bp GlnSerSerLysLeuThrIleAsp{Il}++ + 1242897 : CAAAGTTCAAAGTTGACCATTGAC{AT}gt.........................a : 1242799 303 : {e}TyrSerSerThrTrpTyrGlyThrProValGlnIleGlnLysValIleTyrV : 320 {|}|||!:!|||! !|||||| !||||||||| !|||||||||:!!:!!:!!: +{e}TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisI 1242798 : g{A}TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATA : 1242745 321 : alMetGlnIleArgCysLysArgPheCysSerLeuThrAlaGlyGlyLeuTyrGlu : 338 !!:!:|||||||||! ! !:! |||!.!|||..!|||||||||||||||||| leValGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGlu 1242744 : TAGTACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAA : 1242691 339 : MetAsnIleGluAsnPheGlyIle >>>> Target Intron 3 >>>> Thr : 347 ||||||||||||||||||||| ! 92 bp ||| MetAsnIleGluAsnPheGlySer++ ++Thr 1242690 : ATGAACATTGAGAATTTTGGATCAgt.........................agacT : 1242572 348 : PheLysThrCysMetSerTyrIleThrMetLeuMetSerLeuLysAsn : 363 ||||||||||||!!:||||||.!!|||||||||:!:|||!!!|||:!! PheLysThrCysIleSerTyrPheThrMetLeuLeuSerPheLysAsp 1242571 : TTCAAAACCTGCATATCGTACTTTACGATGCTCTTATCATTCAAAGAC : 1242522 vulgar: gi|350399566|ref|XP_003485570.1| 228 363 . KQ414851.1 1243167 1242521 - 355 M 28 84 5 0 2 I 0 73 3 0 2 M 45 135 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 44 132 5 0 2 I 0 88 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242522 1243167 355 - . gene_id 4 ; sequence gi|350399566|ref|XP_003485570.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1243084 1243167 . - . KQ414851.1 exonerate:protein2genome:local exon 1243084 1243167 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1243082 1243083 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243007 1243083 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1243007 1243008 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242870 1243006 . - . KQ414851.1 exonerate:protein2genome:local exon 1242870 1243006 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242868 1242869 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242798 1242869 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1242798 1242799 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242665 1242797 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242797 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 2 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242522 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242522 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242522 1243167 355 - . alignment_id 4 ; Query gi|350399566|ref|XP_003485570.1| ; Align 1243168 229 84 ; Align 1243007 257 135 ; Align 1242797 303 132 ; Align 1242573 347 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350399566|ref|XP_003485570.1| PREDICTED: uncharacterized protein LOC100741772 [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 342 Query range: 59 -> 187 Target range: 1229734 -> 1229224 60 : PheHisLysLeuPheGlnLeuValAlaArgHisTrpGlnGluLeuLysLeuAsnGl : 78 |||...|||::::::...||||||.!!! !.!.|||:!!:!!|||!:!:!!|||! PheArgLysMetTyrAsnLeuValThrIleGluTrpGluGlnLeuArgMetAsnAs 1229734 : tttagaaaaatgtataatctCGTGACAATAGAGTGGGAGCAGTTGAGGATGAACGA : 1229680 79 : yGluLeuHisValLeuGluGluIleValMetGlnGlyAsnArgMetAlaLeuPheT : 97 !|||:!!|||||||||:!!|||:!!..!:!!:!!|||!:!!:!:!!|||! !!!.| pGluValHisValLeuGlnGluValThrLeuLysGlySerLysLeuAlaGlnLeuT 1229679 : CGAGGTGCATGTGCTTCAAGAGGTTACTTTGAAAGGTAGTAAATTGGCCCAATTAT : 1229623 98 : yrArgSerThrLeuLeuSerPhe{M} >>>> Target Intron 1 >>>> { : 105 |||||||| !! !|||! !.!.{|} 126 bp { yrArgSerGluTyrLeuPheMet{M}-+ +-{ 1229622 : ACAGAAGTGAGTATCTTTTCATG{A}tt.........................aa{ : 1229472 106 : et}GlyLeuPheLeuLeuValProLeuIleSerProIleLeuAspIleValHisPr : 123 ||} !!:!!||||||||||||||||||.!!.!!||| !||||||||||||! !|| et}CysValPheLeuLeuValProLeuPheGlyProAlaLeuAspIleValLeuPr 1229471 : TG}TGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCGTCCTTCC : 1229419 124 : oIleAsnGlyThrArgThrArgGlnGlnLeuLeuArgValAsnTyrIlePhePheA : 142 | !|||! !|||||| !!||||||||||||!!!|||||||||||||||.!!|||| oSerAsnGluThrArgProArgGlnGlnLeuPheArgValAsnTyrIleIlePheA 1229418 : ATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAATTTTCG : 1229362 143 : spAspAspAspTyrPhePheTyrIleTyrLeuGlnLeuPheCysGlyAlaAlaVal : 160 ||.!.! |||||||||||||||:!:|||:!!|||||||||!! !!.!! !||| spGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPheTrpCysThrIleVal 1229361 : ACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACAATCGTT : 1229308 161 : ValValTyrThrIleIleGlyAlaAspTrpLeuTyrMetLeuIleIleHisHisSe : 179 :!!||| .!!|||||| !!.!|||! |||||||||:!!||||||:!!|||:! LeuValMetAlaIleIleThrValAspSerLeuTyrMetIleIleIleTyrHisAl 1229307 : CTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGATCATAATTTACCATGC : 1229251 180 : rSerGlyLeuPheAlaValCysGly : 187 !||||||:!!||||||:!!|||||| aSerGlyMetPheAlaIleCysGly 1229250 : CAGCGGAATGTTCGCTATATGCGGG : 1229225 vulgar: gi|350399566|ref|XP_003485570.1| 59 187 . KQ414851.1 1229734 1229224 - 342 M 45 135 S 0 1 5 0 2 I 0 122 3 0 2 S 1 2 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229734 342 - . gene_id 5 ; sequence gi|350399566|ref|XP_003485570.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1229599 1229734 . - . KQ414851.1 exonerate:protein2genome:local exon 1229599 1229734 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1229597 1229598 . - . intron_id 1 ; splice_site "TT" KQ414851.1 exonerate:protein2genome:local intron 1229473 1229598 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1229473 1229474 . - . intron_id 0 ; splice_site "AA" KQ414851.1 exonerate:protein2genome:local cds 1229225 1229472 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229472 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229734 342 - . alignment_id 5 ; Query gi|350399566|ref|XP_003485570.1| ; Align 1229735 60 135 ; Align 1229471 106 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350399566|ref|XP_003485570.1| PREDICTED: uncharacterized protein LOC100741772 [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 215 Query range: 222 -> 302 Target range: 1239471 -> 1238684 223 : GluAlaIleArgPheSerAspIleLeuLysGluSerSerArgGlySerTyrLeuIl : 241 .!.|||.!!|||! !! !:!!:!!|||:!!:!!|||||| ! !|||||||||.! HisAlaPheArgCysTyrAsnValLeuGlnLysSerSerValLeuSerTyrLeuPh 1239471 : CATGCTTTCAGGTGTTACAATGTTCTGCAGAAAAGCAGTGTGCTCAGTTACTTGTT : 1239417 242 : eGlnValGlyLeuAsnMetLeuGlyIleSerAlaThrAlaValGln >>>> Tar : 257 !|||||||||||||||!!::!!|||:!!|||!.!:!!||||||||| eGlnValGlyLeuAsnIleValGlyLeuSerValSerAlaValGln++ 1239416 : TCAAGTTGGATTAAACATAGTGGGCCTTAGTGTGTCAGCTGTTCAAgt........ : 1239367 258 : get Intron 1 >>>> ThrValValAsnLeuAspArgProGluGluAlaMetA : 269 547 bp ||||||! !|||:!!||| !||| !! !|||:!!| ++ThrValGlyAsnIleAspAspProThrValAlaLeuA 1239366 : .................agACAGTGGGGAATATAGACGATCCGACAGTAGCTTTGA : 1238786 270 : rgSerAlaValPheCysGlyAlaAsnGlnPheHisLeuPheLeuLeuSerLeuPro : 287 ||!:!|||..! !!!! ||||||!!.|||.!!|||||||||:!!:!!|||:!!||| rgAsnAlaThrValTrpGlyAlaLysGlnIleHisLeuPheIleIleSerIlePro 1238785 : GAAACGCTACGGTCTGGGGGGCTAAGCAAATTCACCTGTTCATCATCAGTATACCT : 1238732 288 : GlyGlnValLeuLeuAspHisCysSerAspLeuAlaAspAsnIle : 302 ||||||||||||:!!||||||||| !!!:|||:!!:!!:!!!!: GlyGlnValLeuIleAspHisCysValGluLeuSerAsnAspMet 1238731 : GGACAGGTGCTTATAGATCATTGTGTGGAGCTGTCAAACGACATG : 1238685 vulgar: gi|350399566|ref|XP_003485570.1| 222 302 . KQ414851.1 1239471 1238684 - 215 M 34 102 5 0 2 I 0 543 3 0 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1238685 1239471 215 - . gene_id 6 ; sequence gi|350399566|ref|XP_003485570.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1239370 1239471 . - . KQ414851.1 exonerate:protein2genome:local exon 1239370 1239471 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1239368 1239369 . - . intron_id 1 ; splice_site "gt" KQ414851.1 exonerate:protein2genome:local intron 1238823 1239369 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1238823 1238824 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1238685 1238822 . - . KQ414851.1 exonerate:protein2genome:local exon 1238685 1238822 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1238685 1239471 215 - . alignment_id 6 ; Query gi|350399566|ref|XP_003485570.1| ; Align 1239472 223 102 ; Align 1238823 257 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350399566|ref|XP_003485570.1| PREDICTED: uncharacterized protein LOC100741772 [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 197 Query range: 99 -> 187 Target range: 1240085 -> 1239821 100 : ThrLeuLeuSerPheMetGlyLeuPheLeuLeuValProLeuIleSerProIleLe : 118 ..!|||!!!||| ::: :::||||||:!!||||||:::... |||:::|| ValLeuPheSerValLeuPheIlePheLeuValValProIlePheProProLeuLe 1240085 : GTTTTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcctcctcttct : 1240031 119 : uAspIleValHisProIleAsnGlyThrArgThrArgGlnGlnLeuLeuArgValA : 137 |||||||:!! ! |||:!!|||! !||||||.!!||||||::::::...:::|||| uAspIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIlePheLysValA 1240030 : ggACATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatattcaaagtta : 1239974 138 : snTyrIlePhePheAspAspAspAspTyrPhePheTyrIleTyrLeuGlnLeuPhe : 155 |||||:!:.!!.!!||| |||!!: ! !.!. !! !|||!!!!!.|||! ! snTyrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPheHisLeuSer 1239973 : aTTACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTTCACTTGTCT : 1239920 156 : CysGlyAlaAlaValValValTyrThrIleIleGlyAlaAspTrpLeuTyrMetLe : 174 !! !.!! !..!:!!! ! :!!:!::!!.!!:!!!!:! !:!!|||:!:|| TrpThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIleTyrValLe 1239919 : TGGACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGTCCT : 1239863 175 : uIleIleHisHisSerSerGlyLeuPheAlaValCysGly : 187 |:!!|||||||||!!!||||||||||||||||||..!||| uLeuIleHisHisThrSerGlyLeuPheAlaValAlaGly 1239862 : TCTTATTCATCATACCAGCGGTCTGTTTGCTGTGGCTGgg : 1239822 vulgar: gi|350399566|ref|XP_003485570.1| 99 187 . KQ414851.1 1240085 1239821 - 197 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240085 197 - . gene_id 7 ; sequence gi|350399566|ref|XP_003485570.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239822 1240085 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240085 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240085 197 - . alignment_id 7 ; Query gi|350399566|ref|XP_003485570.1| ; Align 1240086 100 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350399566|ref|XP_003485570.1| PREDICTED: uncharacterized protein LOC100741772 [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 185 Query range: 98 -> 187 Target range: 1243863 -> 1243599 99 : SerThrLeuLeuSerPheMetGlyLeuPheLeuLeuValProLeuIleSerProIl : 117 .!!||||||!!!! !||| ! !:!!|||:!!||| !!||||||||| !!||||| GlyThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIl 1243863 : GGTACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAAT : 1243809 118 : eLeuAspIleValHisProIleAsnGlyThrArgThrArgGlnGlnLeuLeuArgV : 136 |||||||:!!||| |||:!!|||! !||||||:!!||| !::::::::::::: eLeuAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysL 1243808 : ATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaat : 1243752 137 : alAsnTyrIlePhePheAspAspAspAspTyrPhePheTyrIleTyrLeuGlnLeu : 154 ::...|||:!: |||||| ::: |||::: :::|||:!! ! ! euGlnTyrLeu---PheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThr 1243751 : tgcaataccTG---TTCGACAtggagaagaatttttattcattatacGTCTACACT : 1243701 155 : PheCysGlyAlaAlaValValValTyrThrIleIleGlyAlaAspTrpLeuTyrMe : 173 !!! !!:!! !:!!..!:!! ..!|||||| ! !||| !||||||:! GlyTrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrVa 1243700 : GGCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGT : 1243644 174 : tLeuIleIleHisHisSerSerGlyLeuPheAlaValCysGly : 187 !:!!||||||||||||!!!!!!||||||||||||||||||||| lValIleIleHisHisThrCysGlyLeuPheAlaValCysGly 1243643 : GGTAATCATTCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: gi|350399566|ref|XP_003485570.1| 98 187 . KQ414851.1 1243863 1243599 - 185 M 41 123 G 1 0 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243863 185 - . gene_id 8 ; sequence gi|350399566|ref|XP_003485570.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243863 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243863 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243863 185 - . alignment_id 8 ; Query gi|350399566|ref|XP_003485570.1| ; Align 1243864 99 123 ; Align 1243741 141 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350399566|ref|XP_003485570.1| PREDICTED: uncharacterized protein LOC100741772 [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 151 Query range: 302 -> 344 Target range: 1228545 -> 1228419 303 : TyrSerSerThrTrpTyrGlyThrProValGlnIleGlnLysValIleTyrValMe : 321 |||||||||||||||||| !..! !!!.!:!!.!!|||::!|||||||||:!!|| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 322 : tGlnIleArgCysLysArgPheCysSerLeuThrAlaGlyGlyLeuTyrGluMetA : 340 ||||||||||..! !!:! |||! !|||||||||||||||||||||||||||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 341 : snIleGluAsnPhe : 344 ||!!:||||||||| snMetGluAsnPhe 1228433 : ACATGGAGAACTTT : 1228420 vulgar: gi|350399566|ref|XP_003485570.1| 302 344 . KQ414851.1 1228545 1228419 - 151 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228420 1228545 151 - . gene_id 9 ; sequence gi|350399566|ref|XP_003485570.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228420 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228420 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228420 1228545 151 - . alignment_id 9 ; Query gi|350399566|ref|XP_003485570.1| ; Align 1228546 303 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350399566|ref|XP_003485570.1| PREDICTED: uncharacterized protein LOC100741772 [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 145 Query range: 253 -> 303 Target range: 1228764 -> 1228614 254 : AlaValGlnThrValValAsnLeuAspArgProGluGluAlaMetArgSerAlaVa : 272 :!! !!|||! !:!!:!! !||||||||||||...||||||!!:|||! !:!!|| SerPheGlnIleMetLeuAlaLeuAspArgProSerGluAlaIleArgTyrSerVa 1228764 : TCTTTCCAGATAATGCTCGCCCTGGATAGACCGAGCGAAGCTATTAGATATTCTGT : 1228710 273 : lPheCysGlyAlaAsnGlnPheHisLeuPheLeuLeuSerLeuProGlyGlnValL : 291 | !! !|||!.! |||||||||||||||:!!:!!|||||||||||||||..!| lValLeuGlyGlyAlaGlnPheHisLeuPheIleIleSerLeuProGlyGlnThrL 1228709 : GGTTCTTGGAGGTGCGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACAC : 1228653 292 : euLeuAspHisCysSerAspLeuAlaAspAsnIleTyr : 303 ||:!!|||||||||!!! |||.!!:!!:!!!!:||| euValAspHisCysThrMetLeuThrAsnAspMetTyr 1228652 : TCGTGGATCATTGTACCATGCTAACGAACGATATGTAC : 1228615 vulgar: gi|350399566|ref|XP_003485570.1| 253 303 . KQ414851.1 1228764 1228614 - 145 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228615 1228764 145 - . gene_id 10 ; sequence gi|350399566|ref|XP_003485570.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228615 1228764 . - . KQ414851.1 exonerate:protein2genome:local exon 1228615 1228764 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228615 1228764 145 - . alignment_id 10 ; Query gi|350399566|ref|XP_003485570.1| ; Align 1228765 254 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350399566|ref|XP_003485570.1| PREDICTED: uncharacterized protein LOC100741772 [Bombus impatiens] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 225 -> 256 Target range: 1228927 -> 1228834 226 : ArgPheSerAspIleLeuLysGluSerSerArgGlySerTyrLeuIleGlnValGl : 244 ||||||! !|||||||||!!.||||||||||||..!|||||||||:!!|||||||| ArgPheTyrAspIleLeuAsnGluSerSerArgAsnSerTyrLeuLeuGlnValGl 1228927 : AGGTTTTACGATATTCTAAACGAGAGCAGTCGAAACAGCTACTTGCTTCAGGTTGG : 1228873 245 : yLeuAsnMetLeuGlyIleSerAlaThrAlaValGln : 256 ||||!:!|||:!!.!!||||||!.!|||||||||||| yLeuSerMetMetSerIleSerValThrAlaValGln 1228872 : ATTGAGCATGATGAGCATCAGCGTGACTGCTGTGCAG : 1228835 vulgar: gi|350399566|ref|XP_003485570.1| 225 256 . KQ414851.1 1228927 1228834 - 111 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228835 1228927 111 - . gene_id 11 ; sequence gi|350399566|ref|XP_003485570.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228835 1228927 . - . KQ414851.1 exonerate:protein2genome:local exon 1228835 1228927 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228835 1228927 111 - . alignment_id 11 ; Query gi|350399566|ref|XP_003485570.1| ; Align 1228928 226 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350413753|ref|XP_003490100.1| PREDICTED: uncharacterized protein LOC100744254 [Bombus impatiens] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 435 Query range: 0 -> 234 Target range: 5294 -> 4042 1 : MetSerLysArgIleThrProGluLysValIleAspIleIleTrpPheSerValAlaLeuTh : 21 |||! !||| ! !:!||||||!:!!.!|||..!:!!:!! !!! !..!|||!!!|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValHisValIleThrAlaPheTh 5294 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCACGTTATCACGGCTTTTAC : 5234 22 : rPheCysTrpProLeuProIleAsnSerSerGlyLysArgIleLeuValHisLysIleLeuG : 42 |! !||||||||||||||| !..:!!!!! !...! !:!:||| ! !|||||||||: rCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuA 5233 : CTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGA : 5171 43 : lnIleSerSerValIleSerAlaCysMetLeuLeuLeuProLeuLeuTyrSerIleTyrLeu : 62 :! !! ! !:!!:!!!:!|||! :!!|||!!!|||||||||||||||:!!:!::!!:!! rgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHisVal 5170 : GATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTG : 5111 63 : HisLeuAspAspIleIleIleValSerGluCysIleCysLeuPheLeuGlyValSerGlnTh : 83 |||! !:!!||| ! ! !|||:!!:!!..! !|||||| |||!.!::: ||| HisArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGlnIl 5110 : CATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCctcgtgcaaat : 5048 84 : rIleValGlnSerIleIleCysLeuIleAsnHisAspSerLeuGln >>>> Target In : 99 ... |||::!.!!:!!|||:!! !.!.:!!||| !!!!||| 550 ePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGln++ 5047 : atttttccagacTTTCGTTTGCATCGGCCAATACGATCATTTTCAGgt.............. : 4998 100 : tron 1 >>>> HisValValGluGluMetIleIleCysValLysGlnAlaArgLysTyrG : 115 bp ! :!!:!!|||||||||! |||||| !:!! !|||!:! !|||| ++LysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrG 4997 : ...........agAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACG : 4402 116 : luArgGluIlePheSerLysHisIleAlaArgCysSerValPheTyrAlaSerSerIleMet : 135 |||||!!::!!|||..!::!:!!:!! !!:! |||:::|||||| ::: !! luArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSer 4401 : AAAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCA : 4342 136 : CysIleTyrLeuAlaAlaThrAlaPheSerIleGlyProAlaIleLeuProLeuSerPhePr : 156 !! .!!||||||.!!|||! ! !.!. !:!!||| ! !:!!:!! !! ! !!||||| TrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPhePr 4341 : TGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCC : 4279 157 : oSerGluAlaGluTyrProPheArgValAsnTyrThrProValTyrValIleIleTyrMetG : 177 |!!!.!.|||! !|||||||||! !||||||!:! !|||:!! !||||||!:!|||! oThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetH 4278 : AACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGC : 4216 178 : lnGlnSerIleLeuSerTyrGlnCysValAlaHisIleCysLeuSerMetPheGlySerLeu : 197 !.||||||.!!:!!.!! ||||||!.!|||||| ! !!:!!!:!:!!.!!..!:!!||| isGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeu 4215 : ACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTG : 4156 198 : LeuPheTrpPheThrAlaAlaArgPheGlnCysLeuAlaLeuGluLeuLysArgThrAlaAs : 218 |||!!. ||||||.!!|||||||||::: ||| ! !||||||!:!!.!..! !|| LeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAs 4155 : TTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGA : 4093 219 : pValArgThrLeuIleValCysValGluLysGlnLeuHisLeuArgArg : 234 |:!!..!||||||||| ! !!:!!:!!||| ! ! ! !:!!|||||| pIleGluThrLeuIleLysSerMetLysLysTyrSerThrValArgArg 4092 : TATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: gi|350413753|ref|XP_003490100.1| 0 234 . LHQN01020543.1 5294 4042 - 435 M 98 294 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 5294 435 - . gene_id 1 ; sequence gi|350413753|ref|XP_003490100.1| ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 5001 5294 . - . LHQN01020543.1 exonerate:protein2genome:local exon 5001 5294 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 4999 5000 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 4451 5000 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 4451 4452 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 4043 4450 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4450 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 5294 435 - . alignment_id 1 ; Query gi|350413753|ref|XP_003490100.1| ; Align 5295 1 294 ; Align 4451 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1207 Query range: 1 -> 405 Target range: 256607 -> 258738 2 : ThrGluSerValArgIleGluGluAsnLeuTyrSerLeuSerAspTyrSerLeuGlnL : 21 !.!|||! !!.! !:!!:!! !|||!!! ! |||! !||||||||||||||||||| AsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerLeuGlnL 256608 : AACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTCTCCAGT : 256665 22 : euAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerAlaSerThrSerAr : 40 |||||||||||||||||||||||||||||!.!||||||! !|||:!!||||||!!!! euAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerThrThrTh 256666 : TGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCACTACAAC : 256722 41 : gLeuGluArgIleIleCysPheValLeuIlePheLeuCysTyrPhePheValLeuPhe : 59 !|||||||||! !:!!! .!!||||||! !.!!:!!|||||| !! !:!!|||||| rLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIleLeuPhe 256723 : CCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTC : 256779 60 : ThrIleIleProCysLeuLeuHisLeuIleLeuGluAspGluAsnIleArgMetLysL : 79 |||:!:||||||||||||||||||:!!.!!|||!!:|||!!:!:!.!! ||||||: ThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrMetLysV 256780 : ACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAcatgaaag : 256839 80 : euLysIleLeuGlyProPheSerHisTrpLeuIleGlyGlyIleAsnTyrSerThrLe : 98 ::||| ...||||||.!.|||||||||:!!|||.!! !! !||||||!!! !|| alLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrThrLeuLe 256840 : tgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACACGTTGCT : 256896 99 : uLeuLeuArgSerArgGluMetArgValCysIleGluHisIleGlnAsnAspTrpLys : 117 |||||||!:!.!!!:!!!:!!:||| !|||:!!|||||||||:!!!..||||||!:! uLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAspTrpArg 256897 : GTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGA : 256953 118 : IleValThrArgGlnLysAspGlnGlnValMetMetArgTyrAlaArgIleGlyArgT : 137 !!:|||! !|||:!!|||||||||||||||||||||!:! !!||||||.!!||||||| MetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheGlyArgT 256954 : ATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTT : 257013 138 : yrIleThrValPheCysThrAlaPheMetGlnValGlyValLeuSerHisCysThrMe : 156 ||:!:.!!..!||||||.!!|||.!!|||||| !||||||... ..! yrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePheValSe 257014 : ACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttcttcgtGTC : 257070 157 : tAlaAlaPheAlaThrLysIleIleGluIleGlyAsnGluThrArgIleIleArgLeu : 175 !:!!|||.!. !|||:!!||||||.!.:!:||||||||||||! !|||:!:|||:!! rSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleValArgVal 257071 : GTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTGCGAGTG : 257127 176 : LeuProCysGlyPheTyrLysSerLeuIleSerIleAspValSerProThrTyrGluI : 195 |||||| ! ! ! ||||||!.!|||:!:!:!:!!||| !||||||||| !!|||| LeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrAsnGluI 257128 : CTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGA : 257187 196 : leIleLeuAlaSerGlnPheValSerGlyPheIleAlaAsnSerSerAlaValGlyAl : 214 ||:!::!! !! !||| ! !|||..!.!!||||||!.!!!!|||.!!|||.!! leValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrValSerIl 257188 : TCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAGTAT : 257244 215 : aValGlyMetAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuThrValLeuMet : 233 ! !!.!!:!:|||||||||||||||.!!||||||! !||||||||||||||||||||| ePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrValLeuMet 257245 : ATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATG : 257301 234 : IleTrpIleLysGluTyrValAsnArgSerLysAspHisSerArgAsnValGlyLeuA : 253 ||||||! !|||!:!||||||..!|||!:!:!!!.....:::... ..!! SerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheProPheL 257302 : TCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttcctttCA : 257361 254 : snGluIleGlyGluIleValGluHisHisLeuArgValLeu{Se} >>>> Target : 267 !.:!!||||||! !|||||||||||||||||||||||||||{||} 7 ysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Se}++ 257362 : AGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt........... : 257407 268 : Intron 1 >>>> {r}PheIleAlaGlyIleGluAspValMetAsnGluIleCys : 280 6 bp {|}||||||:!! !||||||!!:|||||||||..!|||||| ++{r}PheIleSerTyrIleGluGluValMetAsnArgIleCys 257408 : ..............ag{T}TTCATATCATATATCGAGGAAGTGATGAACCGAATATGT : 257518 281 : PheMetGluLeuPheLysCysThrMetAsnMetCysMetIleGlyTyrTyrIleLeuT : 300 |||:!:|||||||||!:!||||||:!! !!!:||||||:!:|||||||||||||||. PheLeuGluLeuPheArgCysThrLeuAlaIleCysMetLeuGlyTyrTyrIleLeuA 257519 : TTTTTAGAGTTGTTTAGATGCACGCTGGCTATATGCATGCTGGGATACTACATTCTTG : 257578 301 : hr >>>> Target Intron 2 >>>> GluTrpLysGluHisAspIleGlnTyr : 309 !! 684 bp ||||||... !!..||||||||| la++ ++GluTrpSerThrGlnAspIleGlnAsn 257579 : CGgt.........................aggaATGGTCTACGCaagatattcaaaat : 258289 310 : MetProAlaTyrLeuIleIleLeuPheSerMetThrPheAsnIlePheValValCysT : 329 ::: :::|||!!!!!:||||||.!.|||::::::|||||||||||||||:::|||| LeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValIleCysT 258290 : ttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaatatgtt : 258349 330 : yrIleGlyGluThrLeuLysGluGln >>>> Target Intron 3 >>>> Cys : 338 |||||||||||! !|||! !|||||| 90 bp ||| yrIleGlyGluIleLeuThrGluGln++ ++Cys 258350 : ACATAGGTGAAATATTAACAGAACAGgt.........................agTGC : 258466 339 : GluLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProTyrLysAspI : 358 :!!|||||||||!!:|||||||||||||||:!!||||||||||||||| !!||| | LysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspLysArgI 258467 : AAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAA : 258526 359 : leLeuAsnLeuIleGlnIleIleLeuArgSerSerMetMetIleLysIleThrAlaGl : 377 |||||:!!|||||| !:!!||| !|||||||||:!!:!::!!:!!||||||||||| leLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleThrAlaGl 258527 : TACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGgg : 258583 378 : yLysLeuValHisMetSerIlePheThrPheGlyAsn >>>> Target Intron : 390 ||||... ||||||||||||!:!||||||.!!:!! 69 bp yLysPhePheHisMetSerIleTyrThrPheSerAsp++ 258584 : aaaattctttcacatGTCCATTTACACATTCAGCGATgt................... : 258624 391 : 4 >>>> ValIleLysThrAlaCysAlaTyrPheAsnLeuLeuArgGlnAlaThr : 405 ||||||||||||:!!! !||||||!!.|||||||||||||||!.!:!! ++ValIleLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnValSer 258625 : ......agGTAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGTATCG : 258738 vulgar: gi|350422514|ref|XP_003493187.1| 1 405 . KQ414889.1 256607 258738 + 1207 M 265 795 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256608 258738 1207 + . gene_id 1 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256608 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256608 257404 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256608 258738 1207 + . alignment_id 1 ; Query gi|350422514|ref|XP_003493187.1| ; Align 256608 2 795 ; Align 257482 268 99 ; Align 258265 301 111 ; Align 258466 338 156 ; Align 258691 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1199 Query range: 1 -> 367 Target range: 259727 -> 262015 2 : ThrGluSerValArgIleGluGluAsnLeuTyrSerLeuSerAspTyrSerLeuGlnL : 21 !.!:!!|||||| !:!!||| !!:!!!! !|||! !||||||||||||||||||! AsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerLeuGlnP 259728 : AACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCCAAT : 259785 22 : euAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerAlaSerThrSerAr : 40 !!|||||||||||||||||||||||||||!.!||||||! !|||:!!||||||!!!|| heAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerThrThrAr 259786 : TTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCACGACCAG : 259842 41 : gLeuGluArgIleIleCysPheValLeuIlePheLeuCysTyrPhePheValLeuPhe : 59 |||||||!:!||||||! ! !!:!!|||||||||:!!|||||| ! !:!!||| !! gLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIleLeuVal 259843 : ACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATACTGGTC : 259899 60 : ThrIleIleProCysLeuLeuHisLeuIleLeuGluAspGluAsnIleArgMetLysL : 79 |||:!:|||||||||:!!||||||:!!:!!|||||| ! |||!:!:!: !|||||| ThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrMetLysT 259900 : ACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAA : 259959 80 : euLysIleLeuGlyProPheSerHisTrpLeuIleGlyGlyIleAsnTyrSerThrLe : 98 !|||:!:|||||||||.!!!!!||||||!!!:!!||| !!|||||||||!!!||||| hrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrThrThrLe 259960 : CGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTT : 260016 99 : uLeuLeuArgSerArgGluMetArgValCysIleGluHisIleGlnAsnAspTrpLys : 117 ||||||||||.!!|||!!:!!:! ! !|||:!:||||||:!::!!|||||||||!:! uLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAspTrpArg 260017 : GTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGA : 260073 118 : IleValThrArgGlnLysAspGlnGlnValMetMetArgTyrAlaArgIleGlyArgT : 137 |||:!!||||||:!!|||||||||.!.||||||:!!|||||||||!:!.!!||||||| IleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgT 260074 : ATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGAT : 260133 138 : yrIleThrValPheCysThrAlaPheMetGlnValGlyValLeuSerHisCysThrMe : 156 ||:!!.!!!.!! !|||.!!||||||:!!|||! !|||||||||!!! !||| !:! yrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCysLeuVa 260134 : ACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGT : 260190 157 : tAlaAlaPheAlaThrLysIleIleGluIleGlyAsnGluThrArgIleIleArgLeu : 175 :.!!!.!!!.::!|||:!!:!:|||:!!:!:||||||||||||||||||:!!!.!||| lThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleValHisLeu 260191 : CACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTG : 260247 176 : LeuProCysGlyPheTyrLysSerLeuIleSerIleAspValSerProThrTyrGluI : 195 |||||||||!.! ! ||||||..!||||||!:!:!::!!! !||||||! ! !!|||| LeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetAsnGluI 260248 : TTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGA : 260307 196 : leIleLeuAlaSerGlnPheValSerGlyPheIleAlaAsnSerSerAlaValGlyAl : 214 ||:!!|||!.! !|||||||||||||||||||||!.!|||||||||.!!|||||| leValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrValGlyIl 260308 : TTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAAT : 260364 215 : aValGlyMetAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuThrValLeuMet : 233 ! !!.!!:!:|||||||||.!..!!|||||||||||||||||||||!.!||||||||| ePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMet 260365 : CTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATG : 260421 234 : IleTrpIleLysGluTyrValAsnArgSerLysAspHisSerArgAsnValGlyLeuA : 253 !||||||! !|||!:!|||:!!..!|||!:!:!!...!.!!:!!!.!.! !!!!! GluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaProPheL 260422 : GAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTCCTTTCA : 260481 254 : snGluIleGlyGluIleValGluHisHisLeuArgValLeu{Se} >>>> Target : 267 !.|||||||||! !|||||||||||||||||||||!.!|||{!!} 2 ysGluIleGlyValIleValGluHisHisLeuArgAlaLeu{Th}++ 260482 : AGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC{AC}gt........... : 260527 268 : Intron 1 >>>> {r}PheIleAlaGlyIleGluAspValMetAsnGluIleCys : 280 57 bp {!}||||||:!! !!||||||||||||||||||..!|||||| ++{r}PheIleSerArgIleGluAspValMetAsnArgIleCys 260528 : ..............ag{C}TTCATATCGCGTATCGAGGATGTGATGAACCGGATATGC : 260819 281 : PheMetGluLeuPheLysCysThrMetAsnMetCysMetIleGlyTyrTyrIleLeuT : 300 |||:!!|||||||||!:!||||||:!!:!!!!:|||:!::!!|||||||||||||||! PheLeuGluLeuPheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeuM 260820 : TTCCTGGAGTTGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATATTCTTA : 260879 301 : hr >>>> Target Intron 2 >>>> GluTrpLysGluHisAspIleGlnTyr : 309 ! 852 bp |||||| |||!!.||||||||| !! et++ ++GluTrpAlaGluGlnAspIleGlnAsn 260880 : TGgt.........................agGAATGGGCTGAGCAAGATATACAAAAT : 261758 310 : MetProAlaTyrLeuIleIleLeuPheSerMetThrPheAsnIlePheValValCysT : 329 :!! !!.!!|||!!!!!:!!:|||.!.:!!!!: !||||||:!!|||:!!:!!|||| LeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheIleIleCysT 261759 : CTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTT : 261818 330 : yrIleGlyGluThrLeuLysGluGln >>>> Target Intron 3 >>>> Cys : 338 |||||||||||! !|||! !|||||| 81 bp ||| yrIleGlyGluIleLeuThrGluGln++ ++Cys 261819 : ACATCGGTGAAATACTAACGGAACAGgt.........................agTGC : 261926 339 : GluLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProTyrLysAspI : 358 ..!|||||||||!!:||||||||||||||||||||||||||||||||| !!|||..!| SerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuProAspLysSerI 261927 : TCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACCTGATAAAAGTA : 261986 359 : leLeuAsnLeuIleGlnIleIleLeuArg : 367 |||||:!!|||||| !|||||| !||| leLeuAspLeuIleLeuIleIleAlaArg 261987 : TCCTTGATTTGATTTTGATCATTGCACGA : 262015 vulgar: gi|350422514|ref|XP_003493187.1| 1 367 . KQ414889.1 259727 262015 + 1199 M 265 795 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259728 262015 1199 + . gene_id 2 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259728 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259728 260524 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262015 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262015 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259728 262015 1199 + . alignment_id 2 ; Query gi|350422514|ref|XP_003493187.1| ; Align 259728 2 795 ; Align 260783 268 99 ; Align 261734 301 111 ; Align 261926 338 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1115 Query range: 1 -> 300 Target range: 266592 -> 267558 2 : ThrGluSerValArgIleGluGluAsnLeuTyrSerLeuSerAspTyrSerLeuGlnL : 21 !.!||||||:!! !||||||! !|||||| !!||||||||||||||||||||||||| AsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerLeuGlnL 266593 : AACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCCTGCAAT : 266650 22 : euAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerAlaSerThrSerAr : 40 |||||||||||||||||||||||||||||!.!||||||! !! !:!! !||||||!: euAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuThrSerLy 266651 : TGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCACATCTAA : 266707 41 : gLeuGluArgIleIleCysPheValLeuIlePheLeuCysTyrPhePheValLeuPhe : 59 !||||||||||||:!!! !!:!!.!|||||| !!:!!||||||! !! !:!!|||||| sLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIleLeuPhe 266708 : ACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATACTGTTC : 266764 60 : ThrIleIleProCysLeuLeuHisLeuIleLeuGluAspGluAsnIleArgMetLysL : 79 |||:!!||||||||||||!!!||||||:!!||||||||||||!:!||||||! !|||: ThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgThrLysV 266765 : ACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTACGAAAG : 266824 80 : euLysIleLeuGlyProPheSerHisTrpLeuIleGlyGlyIleAsnTyrSerThrLe : 98 !!|||:!:!!!||||||.!.|||||||||!!!:!!|||||||||||||||!!!||||| alLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrThrThrLe 266825 : TGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACACCACACT : 266881 99 : uLeuLeuArgSerArgGluMetArgValCysIleGluHisIleGlnAsnAspTrpLys : 117 |||||||||||||!:!|||!!:|||! !|||:!!||||||!!:|||!..||||||!:! uLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArg 266882 : GTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGATTGGAGG : 266938 118 : IleValThrArgGlnLysAspGlnGlnValMetMetArgTyrAlaArgIleGlyArgT : 137 ||||||||||||! !:!!|||:!!|||||||||:!!!:! !!|||||||||||||||| IleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleGlyArgT 266939 : ATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCGGTCGTT : 266998 138 : yrIleThrValPheCysThrAlaPheMetGlnValGlyValLeuSerHisCysThrMe : 156 |||||.!!:!!||||||.!!|||||||||||| !|||||||||.!!:!!|||..!!! yrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCysValIl 266999 : ACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGTGAT : 267055 157 : tAlaAlaPheAlaThrLysIleIleGluIleGlyAsnGluThrArgIleIleArgLeu : 175 :.!!||||||.!!! !:!!! !:!:|||:!!||||||||||||||||||:!!!.!||| eThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleValHisLeu 267056 : AACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTACATCTG : 267112 176 : LeuProCysGlyPheTyrLysSerLeuIleSerIleAspValSerProThrTyrGluI : 195 |||||||||!.! !!||||||!.!:!!|||:!!:!!|||..!||||||||| !!|||| LeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrAsnGluI 267113 : TTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGAACGAGA : 267172 196 : leIleLeuAlaSerGlnPheValSerGlyPheIleAlaAsnSerSerAlaValGlyAl : 214 ||:!!|||!.!||||||||||||||||||||||||!.!|||||||||!.!|||||||| leValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValValGlyAl 267173 : TTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCGGTGC : 267229 215 : aValGlyMetAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuThrValLeuMet : 233 | !!.!!:!:||||||||||||||||||||||||||||||||||||!:!||||||||| aPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerValLeuMet 267230 : TTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTGATG : 267286 234 : IleTrpIleLysGluTyrValAsnArgSerLysAspHisSerArgAsnValGlyLeuA : 253 !!:||||||||||||!:!||||||||||||!:!||| !!:!!:!|||||| !!!!!: MetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValCysPheA 267287 : ATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTTGCTTCG : 267346 254 : snGluIleGlyGluIleValGluHisHisLeuArgValLeu{Se} >>>> Target : 267 !!:!!||||||! !:!!||||||||||||||||||||||||{||} 6 spLysIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 267347 : ATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG}gt........... : 267392 268 : Intron 1 >>>> {r}PheIleAlaGlyIleGluAspValMetAsnGluIleCys : 280 9 bp {|}||||||||| !!||||||..!||||||!:!||||||||| ++{r}PheIleAlaArgIleGluSerValMetSerGluIleCys 267393 : ..............ag{C}TTCATAGCACGTATCGAAAGTGTAATGAGCGAAATTTGC : 267496 281 : PheMetGluLeuPheLysCysThrMetAsnMetCysMetIleGlyTyrTyrIleLeuT : 300 |||||||||||||||||||||||||||:!!!!:|||:!!:!!.!!||||||||||||| PheMetGluLeuPheLysCysThrMetAspIleCysValLeuSerTyrTyrIleLeuT 267497 : TTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCTATTATATCCTTA : 267556 301 : hr : 300 || hr 267557 : CG : 267558 vulgar: gi|350422514|ref|XP_003493187.1| 1 300 . KQ414889.1 266592 267558 + 1115 M 265 795 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266593 267558 1115 + . gene_id 3 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266593 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266593 267389 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267558 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267558 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266593 267558 1115 + . alignment_id 3 ; Query gi|350422514|ref|XP_003493187.1| ; Align 266593 2 795 ; Align 267460 268 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1083 Query range: 3 -> 300 Target range: 274344 -> 275309 4 : SerValArgIleGluGluAsnLeuTyrSerLeuSerAspTyrSerLeuGlnLeuAsnA : 23 :!!:!!!.!:!! ! !|||!!! !!||||||||||||||||||||||||||||||| AlaIleAsnValThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnA 274345 : GCGATAAACGTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACC : 274402 24 : rgTrpPheLeuLysProIleGlyValTrpProLeuSerAlaSerThrSerArgLeuGl : 42 |||||||||||||||||||||||!.!|||||||||:!!:!! !!|||!!!!:!!!!|| rgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGl 274403 : GATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGA : 274459 43 : uArgIleIleCysPheValLeuIlePheLeuCysTyrPhePheValLeuPheThrIle : 61 |||||||:!!! !:::||||||||||||||||||! !|||:!!|||! !|||:!! uArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrVal 274460 : ACGAATCCTTTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTT : 274516 62 : IleProCysLeuLeuHisLeuIleLeuGluAspGluAsnIleArgMetLysLeuLysI : 81 |||||| !!:!!!!!|||:!!||||||! !||||||!:!:!!!.!:!!|||||||||: IleProSerIlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysL 274517 : ATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGT : 274576 82 : leLeuGlyProPheSerHisTrpLeuIleGlyGlyIleAsnTyrSerThrLeuLeuLe : 100 !:|||||||||.!!.!!||||||!!!||||||||||||||||||!!!||||||||||| euLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLe 274577 : TGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCT : 274633 101 : uArgSerArgGluMetArgValCysIleGluHisIleGlnAsnAspTrpLysIleVal : 119 |||||||!:!|||!!:|||! !|||:!:||||||!!:|||!..||||||!:!|||||| uArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleVal 274634 : ACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTG : 274690 120 : ThrArgGlnLysAspGlnGlnValMetMetArgTyrAlaArgIleGlyArgTyrIleT : 139 ||||||! !:!!|||||||||||||||:!!!:! !!|||!:!||||||||||||:!!. ThrArgProGluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValA 274691 : ACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCG : 274750 140 : hrValPheCysThrAlaPheMetGlnValGlyValLeuSerHisCysThrMetAlaAl : 158 !!:!!||||||.!!|||||||||||| !|||||||||!!!:!!|||..!!!:.!!|| laIlePheCysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAl 274751 : CGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGC : 274807 159 : aPheAlaThrLysIleIleGluIleGlyAsnGluThrArgIleIleArgLeuLeuPro : 177 ||||.!!! !:!!! !:!!:!!:!!|||||||||||||||! !:!:!.!:!!|||||| aPheThrMetGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuPro 274808 : GTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCG : 274864 178 : CysGlyPheTyrLysSerLeuIleSerIleAspValSerProThrTyrGluIleIleL : 197 ||| ! !||||||!.!:!!:!!:!!:!:|||..!||||||||| !!||||||:!!| CysLysAlaTyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValL 274865 : TGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCC : 274924 198 : euAlaSerGlnPheValSerGlyPheIleAlaAsnSerSerAlaValGlyAlaValGl : 216 |||||||||||||||||||||||||||||!.!||||||||||||||||||||| !!.! euAlaSerGlnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSe 274925 : TTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAG : 274981 217 : yMetAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuThrValLeuMetIleTrp : 235 !:!:||||||||||||||||||||||||! !|||||||||!:!||||||||||||||| rLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrp 274982 : CCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGG : 275038 236 : IleLysGluTyrValAsnArgSerLysAspHisSerArgAsnValGlyLeuAsnGluI : 255 |||! |||!:!||||||!.!|||!:!|||...::::::|||||| ...::!|||| IleThrGluPheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluI 275039 : ATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGA : 275098 256 : leGlyGluIleValGluHisHisLeuArgValLeu{Se} >>>> Target Intro : 267 |||||! !:!!||||||||||||||||||||||||{||} 74 bp leGlyValValValGluHisHisLeuArgValLeu{Se}++ 275099 : TCGGCGTGGTTGTCGAACATCATCTGAGGGTACTC{AG}gt................. : 275138 268 : n 1 >>>> {r}PheIleAlaGlyIleGluAspValMetAsnGluIleCysPheMet : 282 {|}||||||||| !!||||||||||||||||||..!|||||||||||| ++{r}PheIleAlaArgIleGluAspValMetAsnArgIleCysPheMet 275139 : ........ag{T}TTCATAGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATG : 275253 283 : GluLeuPheLysCysThrMetAsnMetCysMetIleGlyTyrTyrIleLeuThr : 300 ||||||||||||||||||:!!:!!|||||||||:!!|||||||||||||||||| GluLeuPheLysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleLeuThr 275254 : GAATTGTTCAAGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTCTCACG : 275309 vulgar: gi|350422514|ref|XP_003493187.1| 3 300 . KQ414889.1 274344 275309 + 1083 M 263 789 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274345 275309 1083 + . gene_id 4 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274345 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274345 275135 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275309 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275309 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274345 275309 1083 + . alignment_id 4 ; Query gi|350422514|ref|XP_003493187.1| ; Align 274345 4 789 ; Align 275211 268 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 859 Query range: 0 -> 402 Target range: 232411 -> 235254 1 : MetThrGluSerValArgIleGluGluAsnLeuTyrSerLeuSerAspTyrSerLeuG : 20 ||| !!!:||| !||| ! ! !||| ! !! !! !!!:||||||:!!| MetLeuAspSerSerArgAspThrLeuAsnAlaThrArgAspTyrGluTyrSerIleG 232412 : ATGCTGGACTCGTCCCGCGACACGTTGAACGCTACGCGAGACTACGAGTACAGCATCC : 232469 21 : lnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerAlaSerThrSe : 39 ||:!!|||||||||||||||! !|||!!:|||!.!||||||! ! !.!!..!||||| lnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgValThrGluThrSe 232470 : AGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTGTTACAGAGACCTC : 232526 40 : rArgLeuGluArgIleIleCysPheValLeuIlePheLeuCysTyrPhePheValLeu : 58 |||| !:!!!:!:!!:!!... :!!|||! !.!! !|||:!!! !.!.:!!:!! rArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHisSerLeuMetIle 232527 : GAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCATTCTCTGATGATC : 232583 59 : PheThrIleIleProCysLeuLeuHisLeuIleLeuGluAspGluAsnIleArgMetL : 78 ! !:!!|||:!!||||||:!!||| !:!!:!:!!!|||||| !!:!:!!..! ! SerSerIleValProCysIleLeuPheIleLeuPheGluAspThrSerLeuGluGluA 232584 : TCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACGAGCCTAGAGGAAA : 232643 79 : ysLeuLysIleLeuGlyProPheSerHisTrpLeuIleGlyGlyIleAsnTyrSerTh : 97 :!:!!||| !:!!||||||.!.||||||!::|||!!:|||! !:!:||||||!!! rgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluLeuAsnTyrCysCy 232644 : GGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAATTGAATTATTGCTG : 232700 98 : rLeuLeuLeuArgSerArgGluMetArgValCysIleGluHisIleGlnAsnAspTrp : 116 !|||||| !!:!:!!!.!!!:!!:! ! !|||:!:|||!!.:!::!!.!.|||||| sLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnValLysGlnAspTrp 232701 : CTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGTGAAACAGGACTGG : 232757 117 : LysIleValThrArgGlnLysAspGlnGlnValMetMetArgTyrAlaArgIleGlyA : 136 ::!! !|||! !!:!! !!!::.!.:!!|||:!!!:! !!|||!:!:!!|||| ArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsnAlaLysLeuGlyA 232758 : CGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAACGCGAAACTTGGAC : 232817 137 : rgTyrIleThrValPheCysThrAlaPheMetGlnValGlyValLeuSerHisCysTh : 155 ||! |||.!! !.!!..!.!! !! !|||!!...!|||||| !||| !! ! rgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValGlySerAspGluIl 232818 : GTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCGGCTCCGACGAAAT : 232874 156 : rMetAlaAlaPheAlaThrLysIleIleGluIleGlyAsnGluThrArgIleIleArg : 174 !:!:.!!!.!.!! !! !!..! .!! ! :!:|||||||||!:! ! !!: ! eValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSerTyrSerMetTyr 232875 : AGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAGTTACTCGATGTAC : 232931 175 : LeuLeuProCysGlyPheTyrLysSerLeuIleSerIleAspValSerProThrTyrG : 194 ! !||||||||| !||||||! !!.!|||!!:..!! ! !!||||||||| !!| ProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPheSerProThrAsnG 232932 : CCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTCAGTCCGACGAACG : 232991 195 : luIleIleLeuAlaSerGlnPheValSerGlyPheIleAlaAsnSerSerAlaValGl : 213 |||||!!:!!!!.! !|||! !:!!||||||||||||!.!|||||| !.!!||||| luIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnSerValThrValGl 232992 : AGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGG : 233048 214 : yAlaValGlyMetAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuThrValLeu : 232 |||| !|||:!:!.!||||||.!.||| !||||||||||||||||||!.!|||:!! yAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGlnLeuAsnValVal 233049 : AGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACAGCTGAACGTGGTG : 233105 233 : MetIleTrpIleLysGluTyrValAsnArgSerLysAspHisSerArgAsnValGlyL : 252 ||| :!: ! !!:! |||:!! :!!|||! !!...!..!!..|||!.!! MetSerLysLeuAspAspLeuValAsp---AlaLysGlyGlnGluGluArgValAlaG 233106 : ATGTCGAAATTGGACGATTTGGTGGAC---GCGAAAGGGCAGGAGGAGAGAGTCGCGC : 233162 253 : euAsnGluIleGlyGluIleValGluHisHisLeuArgValLeu{Se} >>>> Tar : 267 !!..:!!:!!||| |||||||||||||||||||||..!|||{||} lnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeu{Se}++ 233163 : AGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTA{AG}gt........ : 233211 268 : get Intron 1 >>>> {r}PheIleAlaGlyIleGluAspValMetAsnGluIle : 279 1315 bp {|}|||||| !..!||||||:!!||||||||| !||| ++{r}PheIleArgAsnIleGluAsnValMetAsnLeuIle 233212 : .................ag{T}TTTATACGGAATATAGAGAACGTTATGAACCTAATA : 234558 280 : CysPheMetGluLeuPheLysCysThrMetAsnMetCysMetIleGlyTyrTyrIleL : 299 |||.!.:!:|||||| ! !||||||:!!||||||||||||:!!! !||||||:!!| CysLeuValGluLeuValGlyCysThrLeuAsnMetCysMetLeuGluTyrTyrLeuL 234559 : TGCCTGGTTGAGTTGGTAGGATGCACGTTGAACATGTGCATGCTCGAGTATTATTTAC : 234618 300 : euThr >>>> Target Intron 2 >>>> GluTrpLysGluHisAspIleGln : 308 ||||| 189 bp ||| ...::: ::: euThr++ ++GluLysSerLys---------Glu 234619 : TCACGgt.........................agGAAAAgtcgaag---------gaa : 234825 309 : TyrMetProAlaTyrLeuIleIleLeuPheSerMetThrPheAsnIlePheValValC : 328 ::: !!:!!|||:!!|||:!:! ! ! |||||||||||||||||||||::: | LysLeuAlaSerTyrValIleValTyrValSerMetThrPheAsnIlePheIlePheC 234826 : aaattagCTTCATACGTCATCGTGTACGTGTCCATGACATTtaatatattcatatttt : 234885 329 : ysTyrIleGlyGluThrLeuLysGluGln >>>> Target Intron 3 >>>> : 338 ||||||||||||||||||||! !|||||| 74 bp ysTyrIleGlyGluThrLeuThrGluGln++ ++ 234886 : gttACATCGGAGAGACGCTTACAGAGCAGgt.........................ag : 234987 339 : CysGluLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProTyrLysA : 357 ||| |||||||||||| !||||||||||||.!.|||||| ||||||:!!||| CysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProHisLysT 234988 : TGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATAAAA : 235046 358 : spIleLeuAsnLeuIleGlnIleIleLeuArgSerSerMetMetIleLysIleThrAl : 376 ! !|||..!|||:!!..!||||||! !||||||||||||:!!|||||||||||||| hrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAl 235047 : CTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCACCGC : 235103 377 : aGlyLysLeuValHisMetSerIlePheThrPheGlyAsn >>>> Target Intr : 390 |||||||!!!:!!!!.||||||:!! |||||||||:!! 71 bp aGlyLysPheLeuGlnMetSerValAlaThrPheGlyAsp++ 235104 : TGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATgt................ : 235147 391 : on 4 >>>> ValIleLysThrAlaCysAlaTyrPheAsnLeuLeuArg : 402 |||.!!|||.!!:!!! !||||||||||||:!!:!!||| ++ValPheLysAlaSerPheAlaTyrPheAsnMetIleArg 235148 : .........agGTATTTAAGGCGTCTTTCGCCTACTTCAACATGATCCGC : 235254 vulgar: gi|350422514|ref|XP_003493187.1| 0 402 . KQ414889.1 232411 235254 + 859 M 241 723 G 1 0 M 24 72 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 33 99 5 0 2 I 0 185 3 0 2 M 4 12 G 3 0 M 30 90 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232412 235254 859 + . gene_id 5 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232412 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232412 233208 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235144 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235144 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 235145 235146 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 235145 235215 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 235214 235215 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 235216 235254 . + . KQ414889.1 exonerate:protein2genome:local exon 235216 235254 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232412 235254 859 + . alignment_id 5 ; Query gi|350422514|ref|XP_003493187.1| ; Align 232412 1 723 ; Align 233135 243 72 ; Align 234525 268 99 ; Align 234813 301 12 ; Align 234825 308 90 ; Align 234989 338 156 ; Align 235216 390 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 841 Query range: 8 -> 266 Target range: 262825 -> 263599 9 : GluAsnLeuTyrSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysP : 28 |||!:!!!! !||||||||||||||||||||||||:!!|||||||||.!.||||||| GluSerPheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysP 262826 : GAAAGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAAC : 262883 29 : roIleGlyValTrpProLeuSerAlaSerThrSerArgLeuGluArgIleIleCysPh : 47 ||||||||!.!||||||||||||||||||! !||||||:!!||||||||||||!! || roIleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPh 262884 : CGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTT : 262940 48 : eValLeuIlePheLeuCysTyrPhePheValLeuPheThrIleIleProCysLeuLeu : 66 |:!!|||||| !!:!!||||||! !.!!:!!|||! !|||:!!||||||! !:!!||| eLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeu 262941 : TCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTT : 262997 67 : HisLeuIleLeuGluAspGluAsnIleArgMetLysLeuLysIleLeuGlyProPheS : 86 |||:!!:!!||||||! !||||||.!!!.!|||||||||:!!:!!|||||||||.!!. HisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuG 262998 : CATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCG : 263057 87 : erHisTrpLeuIleGlyGlyIleAsnTyrSerThrLeuLeuLeuArgSerArgGluMe : 105 !!!!.|||!!!:!!||| !|||||||||!!! !|||||||||!.!|||!:!!!:!! lyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIl 263058 : GTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATAT : 263114 106 : tArgValCysIleGluHisIleGlnAsnAspTrpLysIleValThrArgGlnLysAsp : 124 :!:!! !|||:!::!!|||:!:|||.!.|||||| |||||||||||| !:!!||| eGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAsp 263115 : ACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGAT : 263171 125 : GlnGlnValMetMetArgTyrAlaArgIleGlyArgTyrIleThrValPheCysThrA : 144 |||!:::!!|||:!!!:! !!|||!:! !|||||||||:!:.!!!.!! !|||.!! GlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaI 263172 : CAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGA : 263231 145 : laPheMetGlnValGlyValLeuSerHisCysThrMetAlaAlaPheAlaThrLysIl : 163 !|||||||||..!.!!:!!:!!!!! ! ||| !:!:.!!||||||.!!|||:!!:! lePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnVa 263232 : TCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGT : 263288 164 : eIleGluIleGlyAsnGluThrArgIleIleArgLeuLeuProCysGlyPheTyrLys : 182 :|||||| !||||||||||||||||||:!!|||:!!||||||||| ! ! |||||| lIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLys 263289 : GATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAA : 263345 183 : SerLeuIleSerIleAspValSerProThrTyrGluIleIleLeuAlaSerGlnPheV : 202 ..!:!!||| !!:!!|||..!!:!|||||| !!||||||.!!||||||!!!||||||: GluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheL 263346 : GAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTC : 263405 203 : alSerGlyPheIleAlaAsnSerSerAlaValGlyAlaValGlyMetAlaAlaValPh : 221 !!||||||||||||!.!!.!:!!!!!.!!||||||||| !!||||||.!!|||||||| euSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPh 263406 : TGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTT : 263462 222 : eAlaAlaHisAlaCysGlyGlnLeuThrValLeuMetIleTrpIleLysGluTyrVal : 240 ||||!.!||||||||||||||||||!.!||||||||| !||||||! !|||!:!||| eAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheVal 263463 : CGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTG : 263519 241 : AsnArgSerLysAspHisSerArgAsnValGlyLeuAsnGluIleGlyGluIleValG : 260 |||!:!|||!:!|||.!.!:!!:!|||:!! !!!!!.!|||||||||! !||||||| AsnGlnSerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValG 263520 : AACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTG : 263579 261 : luHisHisLeuArgValLeu : 266 |||||||||||||||||||| luHisHisLeuArgValLeu 263580 : AACATCATCTGAGAGTTCTG : 263599 vulgar: gi|350422514|ref|XP_003493187.1| 8 266 . KQ414889.1 262825 263599 + 841 M 258 774 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262826 263599 841 + . gene_id 6 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262826 263599 . + . KQ414889.1 exonerate:protein2genome:local exon 262826 263599 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262826 263599 841 + . alignment_id 6 ; Query gi|350422514|ref|XP_003493187.1| ; Align 262826 9 774 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 666 Query range: 15 -> 390 Target range: 212869 -> 215022 16 : AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProLeuS : 35 ::: |||::: !! !|||||||||.!!|||||||||! |||:!!|||||| !! AsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspL 212870 : aatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACA : 212927 36 : erAlaSerThrSerArgLeuGluArgIleIleCysPheValLeuIlePheLeuCysTy : 54 .!:!!! !..!|||! !:!!|||!:!! !|||..! :!!:!!! ! !:!!||||| ysSerTyrValSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTy 212928 : AGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTA : 212984 55 : rPhePheValLeuPheThrIleIleProCysLeuLeuHisLeuIleLeuGluAspGlu : 73 | !!!.:!! !!:! !:!!||||||||| !|||:!!:!!.!!|||!!:! ||| rGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGlu 212985 : CGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgag : 213041 74 : AsnIleArgMetLysLeuLysIleLeuGlyProPheSerHisTrpLeuIleGlyGlyI : 93 |||||| ::::!!:!!:!:!!!||| !|||:!! !!! :!! !!.! ! AsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuT 213042 : aatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGT : 213101 94 : leAsnTyrSerThrLeuLeuLeuArgSerArgGluMetArgValCysIleGluHisIl : 112 !!.||| !:!!|||:!!|||!.!.!! !!!:!!:|||..!|||:!!||||||!! rpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMe 213102 : GGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATAT : 213158 113 : eGlnAsnAspTrpLysIleValThrArgGlnLysAspGlnGlnValMetMetArgTyr : 131 ::!! !!|||||||||! !:!!|||!.!:!!:!!|||:!!:!!:!!||| ! ! !! tLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsn 213159 : GAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAAC : 213215 132 : AlaArgIleGlyArgTyrIleThrValPheCysThrAlaPheMetGlnValGlyValL : 151 |||!!!.!!|||!:! |||..!..!.!!|||.!! !|||||| ! ..!||| !! AlaSerPheGlyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheT 213216 : GCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCA : 213275 152 : euSerHisCysThrMetAlaAlaPheAlaThrLysIleIleGluIleGlyAsnGluTh : 170 !! !:!!! ! !:!:!.! !!.!!::!.!! ! ! !!!:! ! ! !:!! !. hrPheTyrPheLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAs 213276 : CGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAA : 213332 171 : rArgIleIleArgLeuLeuProCysGlyPheTyrLysSerLeuIleSerIleAspVal : 189 ! !! !.!!|||! !:!! ! ! ! !!! !:!! !:!!:!!..!:!! ! nValThrPheArgGlnMetValValProValSerArgPheIleValAspValArgTyr 213333 : CGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATAC : 213389 190 : SerProThrTyrGluIleIleLeuAlaSerGlnPheValSerGlyPheIleAlaAsnS : 209 ||||||..! !!||||||.!!!!! !! !|||.!!:!!:!!||| ! :!: !:!!: SerProValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisA 213390 : AGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATG : 213449 210 : erSerAlaValGlyAlaValGlyMetAlaAlaValPheAlaAlaHisAlaCysGlyGl : 228 !!! !||||||! !||| !.!!:!!|||||||||||||||!.!|||||||||||||| laIleAlaValValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGl 213450 : CTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACA : 213506 229 : nLeuThrValLeuMetIleTrpIleLysGluTyrValAsnArgSerLysAspHisSer : 247 |:!! !:!!||||||! !|||:!::!!.!.! :!!:!! !!!!!:!!||| ||| nMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGlyArgGluAspMetSer 213507 : GATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGC : 213563 248 : ArgAsnValGlyLeuAsnGluIleGlyGluIleValGluHisHisLeuArgValLeu{ : 267 !:!||||||! ! :!!..!|||!.!! ||||||.!.!!.|||:!!|||:!!|||{ LysAsnValAsp---AspArgIleAlaValIleValAsnGlnHisValArgIleLeu{ 213564 : AAGAATGTGGAC---GACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTG{ : 213620 268 : Se} >>>> Target Intron 1 >>>> {r}PheIleAlaGlyIleGluAspVa : 275 !.} 840 bp {!}|||:!!! ! !:!:||| ! !. Ly}++ ++{s}PheLeuGluLeuValGluLysAl 213621 : AA}gt.........................ag{A}TTCTTAGAGCTCGTGGAGAAAGC : 214484 276 : lMetAsnGluIleCysPheMetGluLeuPheLysCysThrMetAsnMetCysMetIle : 294 !:!:...:!!:!!! !||| ||||||!!. !||||||:!!|||:!:|||:!::!! aLeuArgGlnValSerPheAlaGluLeuLeuValCysThrValAsnLeuCysLeuVal 214485 : ACTTCGGCAAGTATCTTTCGCTGAATTATTAGTATGCACGGTGAATCTCTGTCTCGTT : 214541 295 : GlyTyrTyrIleLeuThr >>>> Target Intron 2 >>>> GluTrpLysGl : 304 ||||||||||||:!!||| 68 bp ||||||!!... GlyTyrTyrIleIleThr++ ++GluTrpAsnSe 214542 : GGATATTACATAATAACGgt.........................aggAATGGAATTC : 214639 305 : uHisAspIleGlnTyrMetProAlaTyrLeuIleIleLeuPheSerMetThrPheAsn : 323 !:!!:!!:!! ! !! !.!!|||:!!:!::!:! !.!!|||:::||||||||| rAsnAsnLeuThrThrThrValThrTyrValValLeuTyrIleSerLeuThrPheAsn 214640 : GAACAATTTAACAACTACAGTAACTTACGTGGTGTTGTATATCTCTCtcactttcaat : 214696 324 : IlePheValValCysTyrIleGlyGluThrLeuLysGluGln >>>> Target In : 338 ||||||::: ||||||||||||||| !:!!...|||||| 123 IlePheIlePheCysTyrIleGlyGluLeuValSerGluGln++ 214697 : attttcatattttgttaCATAGGCGAGCTTGTGTCTGAACAGgt.............. : 214743 339 : tron 3 >>>> CysGluLysValGlyGluValValTyrMetThrAsnTrpTyrTyr : 352 bp |||:!!||||||||||||||| !||||||! !.!.|||||| ++CysLysLysValGlyGluValSerTyrMetIleGluTrpTyrArg 214744 : ...........agTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACCGA : 214906 353 : LeuProTyrLysAspIleLeuAsnLeuIleGlnIleIleLeuArgSerSerMetMetI : 372 |||||| !!!. ! ! ||| !! !||| !|||!!: !! !|||!:! : LeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSerV 214907 : TTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATCCG : 214966 373 : leLysIleThrAlaGlyLysLeuValHisMetSerIlePheThrPheGlyAsnVal : 390 !!|||.!!|||||||||!!.:!!|||.!.:!!|||||| !||||||.!!!:!||| alLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214967 : TCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215022 vulgar: gi|350422514|ref|XP_003493187.1| 15 390 . KQ414889.1 212869 215022 + 666 M 236 708 G 1 0 M 14 42 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 M 33 99 5 0 2 I 0 64 3 0 2 M 37 111 5 0 2 I 0 119 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212870 215022 666 + . gene_id 7 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212870 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 212870 213621 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212870 215022 666 + . alignment_id 7 ; Query gi|350422514|ref|XP_003493187.1| ; Align 212870 16 708 ; Align 213578 253 42 ; Align 214463 268 99 ; Align 214630 301 111 ; Align 214864 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 660 Query range: 16 -> 400 Target range: 284523 -> 287252 17 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerA : 36 ||||||:!!|||:!!|||||||||||||||||||||||||||||||||||||||||| TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 37 : laSerThrSerArgLeuGluArgIleIleCysPheValLeuIlePheLeuCysTyrPh : 55 !!!!..!!!!! !||||||!:!|||! !! ! ! |||||| !!.:!! !!! !|| euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 56 : ePheValLeuPheThrIleIleProCysLeuLeuHisLeuIleLeuGluAspGlu<-> : 74 |.!.:!! !||| !:!::!!|||||| !||| ! !:!:|||!!: ! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 75 : AsnIleArgMetLysLeuLysIleLeuGlyProPheSerHisTrpLeuIleGlyGlyI : 93 :!!:!! !! !|||:!!|||!!::!!||||||.!.||| !!! :!!!!:!.!!.!| AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 94 : leAsnTyrSerThrLeuLeuLeuArgSerArgGluMetArgValCysIleGluHisIl : 112 ||!!.|||! !! !|||:!!! !|||.!! !!:!!!!: !! !|||:!::!! !!|| leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 113 : eGlnAsnAspTrpLysIleVal<-><-><->ThrArgGlnLysAspGlnGlnValMet : 128 |!:: ||||||...:!!..! !:::::::::::::::::::::::||| eArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMet 284813 : TCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTG : 284869 129 : MetArgTyrAlaArgIleGlyArgTyrIleThrValPheCysThrAlaPheMetGlnV : 148 ! ! ! !|||||||||||||||! !:!:.!!:!!||||||.!!!.!|||||| ! ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrS 284870 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATT : 284929 149 : alGlyValLeuSerHisCysThrMetAlaAlaPheAlaThrLysIleIleGluIleGl : 167 !|||! !!!!! !:!! !|||:!! ! !!!!...!||| ! !! |||||| erGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIle-- 284930 : CCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATC-- : 284986 168 : yAsnGluThrArgIleIleArgLeuLeuProCysGlyPheTyrLysSerLeuIleSer : 186 ! !!!:!.!..!! !:!:|||! !! ! !!! ! !.!!|||:::.!!|||:!!..! -IleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAsp 284987 : -ATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGAT : 285040 187 : IleAspValSerProThrTyrGluIleIleLeuAlaSerGlnPheValSerGlyPheI : 206 !..!||||||:!!!:!||||||:!:! ! !! !|||! !:!!:!!!.!|||: ProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheV 285041 : CCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCG : 285100 207 : leAlaAsnSerSerAlaValGlyAlaValGlyMetAlaAlaValPheAlaAlaHisAl : 225 !! ! !!||| !.!!||||||||| !.!!:!!||||||||||||!.! !|||!. alIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisVa 285101 : TTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGT : 285157 226 : aCysGlyGlnLeuThrValLeuMetIleTrpIleLysGluTyrValAsnArgSerLys : 244 !|||||||||!!!! !:!!|||:!!! ! !:!: ! :!! !|||:!! !! !||| lCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLys 285158 : CTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAA : 285214 245 : AspHis<->SerArgAsnValGlyLeuAsnGluIleGlyGluIleValGluHisHisL : 263 ! ... .!! !!:!..! ! !.!...!:!:|||!!:|||:!!|||||||||| GlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisL 285215 : GGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATC : 285274 264 : euArgValLeu{Se} >>>> Target Intron 1 >>>> {r}PheIleAlaGl : 271 ||!:!:!!|||{.!} 1411 bp {!}||||||:!! euLysIleLeu{Gl}++ ++{y}PheIleSerGl 285275 : TGAAGATACTG{GG}gt.........................ag{T}TTTATATCGCA : 286709 272 : yIleGluAspValMetAsnGluIleCysPheMetGluLeuPheLysCysThrMetAsn : 290 !||||||! :!!:!:|||||||||||||||:!:|||:!!.!! ||||||:!!||| nIleGluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsn 286710 : AATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAAC : 286766 291 : MetCysMetIleGlyTyrTyrIleLeuThr >>>> Target Intron 2 >>>> : 301 !!:|||.!.:!:|||||||||:!!|||||| 80 bp IleCysPheLeuGlyTyrTyrLeuLeuThr++ + 286767 : ATATGCTTTTTGGGATATTATTTACTGACGgt.........................a : 286877 302 : GluTrpLysGluHisAspIleGlnTyrMetProAlaTyrLeuIleIleLeuPheSer : 319 ||||||:!!:!! !!!:! ! ! ! ! !.!!|||! !! :!:||| ! ||| +GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSer 286878 : gGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCT : 286933 320 : MetThrPheAsnIlePheValValCysTyrIleGlyGluThrLeuLysGluGln >> : 338 .!.|||||||||:!!|||:!!:!!|||||||||||||||! !|||...|||||| PheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286934 : TTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt.. : 286992 339 : >> Target Intron 3 >>>> CysGluLysValGlyGluValValTyrMetThr : 348 74 bp ||| !||||||||| ! !..!||||||! ! ++CysLeuLysValGlyLeuSerThrTyrMetIle 286993 : .......................agtGCTTAAAAGTCGGCTTGTCAACTTACATGATC : 287094 349 : AsnTrpTyrTyrLeuProTyrLysAspIleLeuAsnLeuIleGlnIleIleLeuArgS : 368 :!!|||||| !|||||| ||| !! !..!||||||! !|||.!! ! !| AspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValS 287095 : GACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGT : 287154 369 : erSerMetMetIleLysIleThrAlaGlyLysLeuValHisMetSerIlePheThrPh : 387 ||!:! ||||||:!!||||||||||||:!!:!! !!:!:|||:!! !!:!|| erAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPh 287155 : CGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTT : 287211 388 : eGlyAsnValIleLysThrAlaCysAlaTyrPheAsnLeu : 400 | !!!:!|||! !! ! ! !! :!!|||!:!:!!||| eCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 287212 : CTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 287252 vulgar: gi|350422514|ref|XP_003493187.1| 16 400 . KQ414889.1 284523 287252 + 660 M 57 171 G 0 3 M 46 138 G 0 9 M 47 141 G 1 0 M 79 237 G 0 3 M 20 60 S 0 2 5 0 2 I 0 1407 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 287252 660 + . gene_id 8 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284524 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 285287 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286698 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284524 287252 660 + . alignment_id 8 ; Query gi|350422514|ref|XP_003493187.1| ; Align 284524 17 171 ; Align 284698 74 138 ; Align 284845 120 141 ; Align 284986 168 237 ; Align 285226 247 60 ; Align 286700 268 99 ; Align 286879 301 111 ; Align 287064 338 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 647 Query range: 16 -> 400 Target range: 278576 -> 280465 17 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerA : 36 ||||||:!!|||:!!|||||||||||||||||||||||||||||||||||||||||| TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 37 : laSerThrSerArgLeuGluArgIleIleCysPheValLeuIlePheLeuCysTyrPh : 55 !!!!..!!!!! !||||||!:!|||! !! ! ! |||||| !!.:!! !!! !|| euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 56 : ePheValLeuPheThrIleIleProCysLeuLeuHisLeuIleLeuGluAspGlu<-> : 74 |.!.:!! !||| !:!::!!|||||| !||| ! !:!:|||!!: ! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 75 : AsnIleArgMetLysLeuLysIleLeuGlyProPheSerHisTrpLeuIleGlyGlyI : 93 :!!:!! !! !|||:!!|||!!::!!||||||.!.||| !!! !!!:!.! !| AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 94 : leAsnTyrSerThrLeuLeuLeuArgSerArgGluMetArgValCysIleGluHisIl : 112 ||!!.|||! !! !|||:!!! !|||.!! !!:!!!!: !! !|||:!:.!. !!|| leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 113 : eGlnAsnAspTrpLysIleValThr<-><->ArgGlnLysAspGlnGlnValMetMet : 129 |!::!..||||||...:!!..! ! ||||||:::::::::::: :::||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 130 : Arg<->TyrAlaArgIleGlyArgTyrIleThrValPheCysThrAlaPheMet<->G : 147 ||| !|||||||||||||||! !:!:.!!:!!||| !!.!!!.!|||||| . ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 148 : lnValGlyValLeuSerHisCysThrMetAlaAlaPheAlaThrLysIleIleGluIl : 166 ..! !||||||!!!! ! !..!..!||| !! !||||||..!:::! || erGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIl 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCAT : 279039 167 : eGlyAsnGluThrArgIleIleArgLeuLeuProCysGlyPheTyrLysSerLeuIle : 185 |! !||||||||| :!:|||! !! ! !!! ! !.!!|||:::.!!|||:!! eAspAsnGluThr------ValArgSerGlnAlaPheProIleTyrArgGlyLeuLeu 279040 : CGACAATGAAACG------GTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTC : 279090 186 : SerIleAspValSerProThrTyrGluIleIleLeuAlaSerGlnPheValSerGlyP : 205 ..! !..!||||||:!!!:!||||||:!:! ! !! !|||! !:!!:!!!.!| AspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaP 279091 : GATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGT : 279150 206 : heIleAlaAsnSerSerAlaValGlyAlaValGlyMetAlaAlaValPheAlaAlaHi : 224 ||:!! ! !!||| !.!!||||||||| !.!!:!! !|||||||||!.! !|| heValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHi 279151 : TCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCA : 279207 225 : sAlaCysGlyGlnLeuThrValLeuMetIleTrpIleLysGluTyrValAsnArgSer : 243 |!.!|||||||||!!!! !:!!|||:!!! ! !:!: ! :!! !:!!:!! !! ! sValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyVal 279208 : CGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTG : 279264 244 : LysAspHis<->SerArgAsnValGlyLeuAsnGluIleGlyGluIleValGluHisH : 262 |||! ... ||| !!:!..! ! !.!...!:!:|||!!:|||:!!||||||| LysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisH 279265 : AAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATC : 279324 263 : isLeuArgValLeu{Se} >>>> Target Intron 1 >>>> {r}PheIleAl : 270 |||||!:!:!!|||{.!} 571 bp {!}||||||:! isLeuLysIleLeu{Gl}++ ++{y}PheIleSe 279325 : ATCTGAAGATACTG{GG}gt.........................ag{T}TTTATATC : 279919 271 : aGlyIleGluAspValMetAsnGluIleCysPheMetGluLeuPheLysCysThrMet : 289 ! !||||||! :!!:!!|||||||||||||||:!:|||:!!.!! ||||||:!! rGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeu 279920 : GCAAATCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTG : 279976 290 : AsnMetCysMetIleGlyTyrTyrIleLeuThr >>>> Target Intron 2 >> : 301 |||!!:|||.!.:!: !||||||:!!|||||| 80 bp AsnIleCysPheLeuThrTyrTyrLeuLeuThr++ 279977 : AACATATGCTTTTTGACATATTATTTACTCACGgt....................... : 280014 302 : >> GluTrpLysGluHisAspIleGlnTyrMetProAlaTyrLeuIleIleLeuPhe : 318 ||||||:!!:!!:!!||| ! ! ! ! !.!!||||||!!:.!!|||.!. ++GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIle 280015 : ..agGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATA : 280143 319 : SerMetThrPheAsnIlePheValValCysTyrIleGlyGluThrLeuLysGluGln : 338 |||:!:|||||||||:!!|||:!!:!!|||||||||||||||! !|||...|||||| SerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln+ 280144 : TCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACagg : 280203 339 : >>>> Target Intron 3 >>>> CysGluLysValGlyGluValValTyrMet : 347 74 bp ||| !|||||||||! ! !..!|||||| + ++CysLeuLysValGlyValSerThrTyrMet 280204 : t.........................agTGCTTAAAAGTCGGCGTGTCAACTTACATG : 280304 348 : ThrAsnTrpTyrTyrLeuProTyrLysAspIleLeuAsnLeuIleGlnIleIleLeuA : 367 ! !:!!|||||| !|||||| ||| ! !! !..!||||||! !|||.!! ! IleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaV 280305 : ATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCG : 280364 368 : rgSerSerMetMetIleLysIleThrAlaGlyLysLeuValHisMetSerIlePheTh : 386 !|||!:! ||||||:!!||||||||||||:!!:!! !!:!:|||:!! !!: alSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSe 280365 : TGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAG : 280421 387 : rPheGlyAsnValIleLysThrAlaCysAlaTyrPheAsnLeu : 400 !||| !!!:!|||! !! ! ! !! :!!|||!:!:!!||| rPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280422 : CTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: gi|350422514|ref|XP_003493187.1| 16 400 . KQ414889.1 278576 280465 + 647 M 57 171 G 0 3 M 47 141 G 0 6 M 10 30 G 0 3 M 16 48 G 0 3 M 24 72 G 2 0 M 74 222 G 0 3 M 20 60 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 280465 647 + . gene_id 9 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278577 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279340 . + . insertions 18 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278577 280465 647 + . alignment_id 9 ; Query gi|350422514|ref|XP_003493187.1| ; Align 278577 17 171 ; Align 278751 74 141 ; Align 278898 121 30 ; Align 278931 131 48 ; Align 278982 147 72 ; Align 279054 173 222 ; Align 279279 247 60 ; Align 279913 268 99 ; Align 280092 301 111 ; Align 280277 338 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 610 Query range: 16 -> 390 Target range: 303196 -> 305783 17 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerA : 36 ||| ! !:!!! !!:!!:!|||.!!|||||| !!:!!|||:!!|||||| | TyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTrpPro------A 303197 : TACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTGGCCA------G : 303248 37 : laSerThrSerArgLeuGluArgIleIleCysPheValLeuIlePheLeuCysTyrPh : 55 || ! !..!..! !! ! !!.!!:!! :!! !||| ||| !! !!!! laValLeuAspGluThrAlaGlyPheLeuProLysIleThrIleGlyLeuSerAsnLe 303249 : CCGTGTTGGACGAAACCGCAGGATTCCTACCAAAAATCACCATTGGACTCAGTAATTT : 303305 56 : ePheValLeuPheThrIleIleProCysLeuLeuHisLeuIleLeuGluAspGluAsn : 74 . !!:!!|||||||||:!:|||||||||:!!||||||:!!|||!!!|||.!.:!!:!! uValLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnLysAsp 303306 : GGTTCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAAAGGAT : 303362 75 : IleArgMetLysLeuLysIleLeuGlyProPheSerHisTrpLeuIleGlyGlyIleA : 94 ! ! !!!:!:!||||||:!!!!!|||! !.!.||| !!! ||||||..! !!!:! ThrIleIleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLeuMetL 303363 : ACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTTGATGA : 303422 95 : snTyrSerThrLeuLeuLeuArgSerArgGluMetArgValCysIleGluHisIleGl : 113 !.|||!!!.!!||| ! !|||!.!! !..!!!:!:!! !|||||||||.!.:!:|| ysTyrTrpAlaLeuAlaThrArgLysProArgIleLysGluCysIleGluGluValGl 303423 : AGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAGGTGCA : 303479 114 : nAsnAspTrpLysIle >>>> Target Intron 1 >>>> ValThrArgGlnL : 123 |!:!||||||||| 938 bp ||| ! !! ! nSerAspTrpLysGlu++ ++ValGluSerLeuA 303480 : AAGTGATTGGAAAGAGgt.........................agGTGGAATCTCTCA : 304447 124 : ysAspGlnGlnValMetMetArgTyrAlaArgIleGlyArgTyrIleThrValPheCy : 142 :!|||!:::!!:!!|||:!:!:!|||!.!!:!!!:|||||| !!:!:|||:!!.!!|| rgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIleCy 304448 : GAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAATCTG : 304504 143 : sThrAlaPheMetGlnValGlyValLeuSerHisCysThrMetAlaAlaPheAlaThr : 161 |.!! !|||||| ! ..!|||! ! !! !:!! !|||:!: ! !||||||||| sAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheAlaThr 304505 : CGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCGACC : 304561 162 : LysIleIleGluIleGlyAsnGluThrArgIleIleArgLeuLeuProCysGlyPheT : 181 !! ! :!:! !.!. ! !.!|||! |||!:!! !||| !! ! ! !| GlyThrTyr---ValAspGluTyrAsnArgThrIleLysProLeuValTyrProThrT 304562 : GGAACGTAT---GTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACCT : 304618 182 : yrLysSerLeuIleSerIleAspValSerProThrTyrGluIleIleLeuAlaSerGl : 200 ||!..:!!|||.!!..!:!!.!...!||||||! !||||||:!::!!! ! ! !!! yrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheValHi 304619 : ACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCA : 304675 201 : nPheValSerGlyPheIleAlaAsnSerSerAlaValGlyAlaValGlyMetAlaAla : 219 .! !:!!!!!|||!:!:!! ! !!|||! !.!!!.!|||||| !|||:!:|||||| sCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAla 304676 : TTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCT : 304732 220 : ValPheAlaAlaHisAlaCysGlyGlnLeuThrValLeuMetIleTrpIleLysGluT : 239 :!!||||||.!!|||||||||||||||:!! !:!!:!!||| ! ! :!: !!: LeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAspL 304733 : CTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGATC : 304792 240 : yrValAsnArgSerLysAspHisSerArgAsnValGlyLeuAsnGluIleGlyGluIl : 258 !||||||!!!!.!:!!... !..! !:!! !!...!:!! !||||| euValAsnSerLysGluSerSerAspLeuAsp---------LysArgLeuIleGluIl 304793 : TTGTCAACAGCAAAGAATCATCTGATTTAGAT---------AAACGATTAATAGAAAT : 304840 259 : eValGluHisHisLeuArgValLeu{Se} >>>> Target Intron 2 >>>> : 267 |||||||||||||||||||:!!|||{!!} 70 bp eValGluHisHisLeuArgIleLeu{Ar}++ ++ 304841 : TGTTGAGCATCATTTGCGAATTTTA{AG}gt.........................ag : 304937 268 : {r}PheIleAlaGlyIleGluAspValMetAsnGluIleCysPheMetGluLeuPheL : 286 {!}||| ||| !:!::!! |||:!!.!.|||:!!||||||:!!|||!!!.!! {g}PheSerAlaIleValGlnThrValLeuGlnGluValCysPheLeuGluPheIleG 304938 : {A}TTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTTCTTGGAATTCATTG : 304994 287 : ysCysThrMetAsnMetCysMetIleGlyTyrTyrIleLeuThr >>>> Target : 301 ! !|||:!: !!:|||:!::!!! !|||||| !:!!||| 62 lySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysIleThr++ 304995 : GTTCTACCTTACTGATATGTCTACTTGAATACTACTGTATAACGgt............ : 305041 302 : Intron 3 >>>> GluTrpLysGluHisAspIleGlnTyrMetProAlaTyrLeuI : 315 bp !!:|||:!!... !:!!! ! !:!: !!.!!||| !: ++AspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrV 305042 : .............agGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAG : 305143 316 : leIleLeuPheSerMetThrPheAsnIlePheValValCysTyrIleGlyGluThrLe : 334 !::!!|||.!.|||:!:|||||||||||||||:!!:!!|||||||||||||||! !|| alLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLe 305144 : TGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCT : 305200 335 : uLysGluGln >>>> Target Intron 4 >>>> CysGluLysValGlyGluV : 344 |! !|||:!! 413 bp !!...!..|||||| ! uMetGluLys++ ++SerSerSerValGlyLeuS 305201 : TATGGAAAAGgt.........................agAGCAGTAGCGTTGGATTAT : 305643 345 : alValTyrMetThrAsnTrpTyrTyrLeuProTyrLysAspIleLeuAsnLeuIleGl : 363 ! !!:!|||! !!:!||||||:!!|||||| !||| |||! !..!|||||| erCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleLe 305644 : CCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTTT : 305700 364 : nIleIleLeuArgSerSerMetMetIleLysIleThrAlaGlyLysLeuValHisMet : 382 !|||||| !! !||||||! !||||||!:!|||||||||:!!||| !!:!: uIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysValValAspLeu 305701 : AATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTA : 305757 383 : SerIlePheThrPheGlyAsnVal : 390 |||:!!! !||||||||||||||| SerLeuSerThrPheGlyAsnVal 305758 : TCTTTATCCACATTTGGAAACGTG : 305783 vulgar: gi|350422514|ref|XP_003493187.1| 16 390 . KQ414889.1 303196 305783 + 610 M 17 51 G 2 0 M 83 249 5 0 2 I 0 934 3 0 2 M 46 138 G 1 0 M 84 252 G 3 0 M 14 42 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 37 111 5 0 2 I 0 409 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303197 305783 610 + . gene_id 10 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303197 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303197 303496 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304868 . + . insertions 0 ; deletions 4 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 2 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303197 305783 610 + . alignment_id 10 ; Query gi|350422514|ref|XP_003493187.1| ; Align 303197 17 51 ; Align 303248 36 249 ; Align 304435 119 138 ; Align 304573 166 252 ; Align 304825 253 42 ; Align 304940 268 99 ; Align 305101 301 111 ; Align 305625 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 591 Query range: 2 -> 266 Target range: 236810 -> 237596 3 : GluSerValArgIleGluGluAsnLeuTyrSerLeuSerAspTyrSerLeuGlnLeuA : 22 :!!!!!||| !! !||| |||:!! !:!! !||||||||||||||||||! !| LysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpA 236811 : AAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGA : 236868 23 : snArgTrpPheLeuLysProIleGlyValTrpProLeuSerAlaSerThrSerArgLe : 41 |||||||| :!!||| !||||||..!|||||| !! !:!!|||!.!|| snArgTrpAlaMetLysSerIleGlyThrTrpPro------GlnPheSerSerAsnLe 236869 : ATCGATGGGCGATGAAAAGCATAGGCACATGGCCA------CAGTTCTCGTCGAACCT : 236919 42 : uGluArgIleIleCysPheValLeuIlePheLeuCysTyrPhePheValLeuPheThr : 60 |||||||! !|||! ! :!!|||! ! ! :!!|||||| ! :!!||||||:!! uGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSer 236920 : CGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCG : 236976 61 : IleIleProCysLeuLeuHisLeuIleLeuGluAspGluAsnIleArgMetLysLeuL : 80 ||||||||||||! !|||||||||!!:|||||| ! ! !!.!.!! !! !|||:!!| IleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValL 236977 : ATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGA : 237036 81 : ysIleLeuGlyProPheSerHisTrpLeuIleGlyGlyIleAsnTyrSerThrLeuLe : 99 ||||||||||| !!!!.|||||||||:!!.!! !! !|||!:!|||!!!! !||||| ysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLe 237037 : AAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTT : 237093 100 : uLeuArgSerArgGluMetArgValCysIleGluHisIleGlnAsnAspTrpLysIle : 118 ||||||| !!!:! !!:||| !! !.!!.!.|||!!::!!!.!||||||!:!! uLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThr 237094 : GCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACG : 237150 119 : ValThrArgGlnLysAspGlnGlnValMetMetArgTyrAlaArgIleGlyArgTyrI : 138 ..!||||||:::::: ::::::||||||:!!!:!||||||!:!.!!.!!|||||| ThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrA 237151 : ACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACG : 237210 139 : leThrValPheCysThrAlaPheMetGlnValGlyValLeuSerHisCysThrMetAl : 157 .!!:!!! !|||||| !|||!!:!!.! !|||:!!|||.!!:!!|||..!|||.! laAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetTh 237211 : CGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGAC : 237267 158 : aAlaPheAlaThrLysIleIleGluIleGlyAsnGluThrArgIleIleArgLeuLeu : 176 !|||! !.!!|||! !:!!:!!! !:!!||||||:!!|||! !|||:!:|||:!!||| rAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLeuArgValLeu 237268 : AGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGCGTGCTG : 237324 177 : ProCysGlyPheTyrLysSerLeuIleSerIleAspValSerProThrTyrGluIleI : 196 |||! !.!.||||||.!!|||:!! !!:!!|||..!!:! !!! ! !!!!:|||: ProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnAspIleV 237325 : CCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGACATCG : 237384 197 : leLeuAlaSerGlnPheValSerGlyPheIleAlaAsnSerSerAlaValGlyAlaVa : 215 !!:!! !|||||||||:!!||||||||||||||||||!:!||||||:!!.!!!.!:! alValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSerValIl 237385 : TTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAGTGTTAT : 237441 216 : lGlyMetAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuThrValLeuMetIle : 234 !.!!:!:.!!::!!.!.!..!!:!!||||||! !|||||||||!:!|||:!!|||:!: eSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValValMetLeu 237442 : AAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTTATGTTG : 237498 235 : TrpIleLysGluTyrValAsnArgSerLysAspHisSerArgAsnValGlyLeuAsnG : 254 ! !|||:!!!!:!:!|||!:!..!:!!!:! !....!!!:!:!!! ! !!!!:!!| SerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAspHisPheAspG 237499 : TCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATCATTTCGACG : 237558 255 : luIleGlyGluIleValGluHisHisLeuArgValLeu : 266 ||||| ! !|||||||||.!.||||||||||||||| luIleProThrIleValGluGluHisLeuArgValLeu 237559 : AAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTG : 237596 vulgar: gi|350422514|ref|XP_003493187.1| 2 266 . KQ414889.1 236810 237596 + 591 M 31 93 G 2 0 M 231 693 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236811 237596 591 + . gene_id 11 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236811 237596 . + . KQ414889.1 exonerate:protein2genome:local exon 236811 237596 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236811 237596 591 + . alignment_id 11 ; Query gi|350422514|ref|XP_003493187.1| ; Align 236811 3 93 ; Align 236904 36 693 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 522 Query range: 2 -> 337 Target range: 208170 -> 210774 3 : GluSerValArgIleGluGluAsnLeuTyrSerLeuSerAspTyrSerLeuGlnLeuA : 22 ..!..!:!! !:!!.!...!|||! ! ! !:! ! !..!!:!!:!:!!!::|||| ArgGlnIlePheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuA 208171 : AGACAAATATTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGA : 208228 23 : snArgTrpPheLeuLysProIleGlyValTrpProLeuSerAlaSerThrSerArgLe : 41 || !||| |||||| !|||||| !|||||| !||| !..! !||| !!|| snValTrpThrLeuLysIleIleGlySerTrpProArgSerIleAspArgSerTrpLe 208229 : ACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTT : 208285 42 : uGluArgIleIleCysPheValLeuIlePheLeuCysTyrPhePheValLeuPheThr : 60 ||||!.!! ! !.!!:!!|||! ! ! ||| !!:!!! !!!.:!! !|||! ! uGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIle 208286 : AGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATC : 208342 61 : IleIleProCysLeuLeuHisLeuIleLeuGluAspGluAsnIleArgMetLysLeuL : 80 :!:|||||| ! !:!! ! !||||||! !! !|||:!!.!! ! :!!|||| ValIleProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuL 208343 : GTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAA : 208402 81 : ysIleLeuGlyProPheSerHisTrpLeuIleGlyGlyIleAsnTyrSerThrLeuLe : 99 |||||! !.!! !!.!.||| !!:::!!!!:!.! !! !!.||| !! !:!! ysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetTh 208403 : AGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGAC : 208459 100 : uLeuArgSerArgGluMetArgValCysIleGluHisIleGlnAsnAspTrpLysIle : 118 !:!!|||..! !!!!:!!:||| !|||:!!|||:!!:!!:!! !||||||!:!! ! rValArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsn 208460 : TGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAAC : 208516 119 : ValThrArgGlnLysAspGlnGlnValMetMetArgTyrAlaArgIleGlyArgTyrI : 138 ||| !!.!:!!:!!|||::!:!!:!!|||:!! ! !!|||!!!.!!!.!||| ! : ValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysL 208517 : GTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAAC : 208576 139 : leThrValPheCysThrAlaPheMetGlnValGlyValLeuSerHisCysThrMetAl : 157 !:! !|||.!.||| !||||||||| ! ! !||||||::: ::: ! euIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLe 208577 : TGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTT : 208633 158 : aAlaPheAlaThrLysIleIleGluIleGlyAsnGluThrArgIleIleArgLeuLeu : 176 ! !!.!!.!! ! ! ! :!!! ! !..!! !.! !! !||| !||| uProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeu 208634 : GCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTG : 208690 177 : ProCysGlyPheTyrLysSerLeuIleSerIleAspValSerProThrTyrGluIleI : 196 !! ! ! !! !|||! !:!!:!:..!:!! !||||||..! !!||||||. ValTyrProValProLysPheIleLeuAspValArgTyrSerProValAsnGluIleP 208691 : GTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTT : 208750 197 : leLeuAlaSerGlnPheValSerGlyPheIleAlaAsnSerSerAlaValGlyAlaVa : 215 !!! !.!! !|||!!.:!!|||||||||:!!|||:!!!:!! !.!!||||||||| heTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCy 208751 : TTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTG : 208807 216 : lGlyMetAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuThrValLeuMetIle : 234 !|||:!!||||||:!!.!!||| !|||||||||||||||||| !:!!|||||| ! sGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSer 208808 : CGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCC : 208864 235 : TrpIleLysGluTyrValAsnArgSerLysAspHisSerArgAsnValGlyLeuAsnG : 254 |||!!::!!:!!! |||:!! !! !!:!!|||.!...!!:!|||:!!! ! .!.. TrpMetGluLysLeuValAspGlyArgGluAspGluGluLysAsnLeuAsp---GlnA 208865 : TGGATGGAGAAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGAT---CAGA : 208921 255 : luIleGlyGluIleValGluHisHisLeuArgValLeu{Se} >>>> Target In : 267 .!:!:!.!.!.|||||||||!!.|||:!!||||||:!!{!:} 1536 rgLeuAlaAsnIleValGluGlnHisValArgValIle{As}++ 208922 : GGTTGGCTAATATCGTGGAGCAGCATGTTCGAGTGATC{AA}gt.............. : 208964 268 : tron 1 >>>> {r}PheIleAlaGlyIleGluAspValMetAsnGluIleCysPhe : 281 bp {!}||||||||| !! !|||:!!:!!:!!:!!||||||! !!. ++{n}PheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeu 208965 : ...........ag{T}TTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTG : 210538 282 : MetGluLeuPheLysCysThrMetAsnMetCysMetIleGlyTyrTyrIleLeuThr : 301 !!:|||:!! ! !||||||:!!|||||||||.!.:!!|||||||||! :!!! ! IleGluMetValGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle+ 210539 : ATAGAAATGGTGGGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTg : 210598 302 : >>>> Target Intron 2 >>>> GluTrpLysGluHisAspIleGlnTyrMet : 310 66 bp |||||| ! ... ! ||| ! !! + ++GluTrpAspSerLysAspProIleSerSer 210599 : t.........................agGAATGGGACTCTAAAGACCCTATCAGCAGT : 210691 311 : ProAlaTyrLeuIleIleLeuPheSerMetThrPheAsnIlePheValValCysTyrI : 330 ! !.!!|||:!!:!!:!!||| !|||:!:|||||||||||||||:!! !!||||||| LeuThrTyrIleValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrI 210692 : CTGACGTACATAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACA : 210751 331 : leGlyGluThrLeuLysGluGln : 337 ||||||||..!||| |||||| leGlyGluValLeuAlaGluGln 210752 : TCGGTGAAGTGTTGGCTGAACAg : 210774 vulgar: gi|350422514|ref|XP_003493187.1| 2 337 . KQ414889.1 208170 210774 + 522 M 249 747 G 1 0 M 14 42 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208171 210774 522 + . gene_id 12 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208171 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208171 208961 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208171 210774 522 + . alignment_id 12 ; Query gi|350422514|ref|XP_003493187.1| ; Align 208171 3 747 ; Align 208918 253 42 ; Align 210499 268 99 ; Align 210664 301 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 486 Query range: 2 -> 339 Target range: 217132 -> 219445 3 : GluSerValArgIleGluGluAsnLeuTyrSerLeuSerAspTyrSerLeuGlnLeuA : 22 :!!||| !|||! !!!: ! .!. ... ::: |||:!!|||! !| GlnSerProArgThrAspTyrGluTyrGluLysAsnIleAsnLeuSerIleGlnTrpA 217133 : CAATCCCCCAGAACCGACTACGAgtacgagaaaaatataaatctcaGTATCCAATGGA : 217190 23 : snArgTrpPheLeuLysProIleGlyValTrpProLeuSerAlaSerThrSerArgLe : 41 ||||||||!!.|||||||||!!:|||:!!|||||| !||| !!!!|||!!!|||! snArgTrpLeuLeuLysProMetGlyLeuTrpProAsnSerArgThrThrThrArgSe 217191 : ATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACTCACGTACCACCACCAGATC : 217247 42 : uGluArgIleIleCysPheValLeuIlePheLeuCysTyrPhePheValLeuPheThr : 60 !..!!:!|||:!!! ! :!!:!!! ! !||||||||| !!!.:!! !||| ! rArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeu 217248 : CCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTA : 217304 61 : IleIleProCysLeuLeuHisLeuIleLeuGluAspGluAsnIleArgMetLysLeuL : 80 .!!:!!||||||! !:!!:!!:!!.!!||||||! !|||:!!:!! ! ||||||| PheValProCysSerMetTyrValPheLeuGluValGluAspLeuTyrAspLysLeuL 217305 : TTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGA : 217364 81 : ysIleLeuGlyProPheSerHisTrpLeuIleGlyGlyIleAsnTyrSerThrLeuLe : 99 ||:!:!!!||||||!!.! ! !!! :!!!!:!.! !:!!!!.|||! !:!!|||:! ysLeuPheGlyProLeuIlePheCysValMetAlaPheValLysTyrTyrSerLeuIl 217365 : AACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGAT : 217421 100 : uLeuArgSerArgGluMetArgValCysIleGluHisIleGlnAsnAspTrpLysIle : 118 !:!!!.!!.! !!!:!!:|||! !|||:!:..!...|||:!!...||||||!:!! ! eValHisLysAlaAspIleArgGluCysValArgArgIleGluArgAspTrpArgAsn 217422 : CGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAAT : 217478 119 : ValThrArgGlnLysAspGlnGlnValMetMetArgTyrAlaArgIleGlyArgTyrI : 138 |||! ! !!:!!||||||::!:!!!.!|||!!: ! !!|||!.!.!!|||||| ! : ValArgCysGluLysAspArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysL 217479 : GTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAAT : 217538 139 : leThrValPheCysThrAlaPheMetGlnValGlyValLeuSerHisCysThrMetAl : 157 !:..!:!!.!!|||||| !|||||| ! !||| ::: ::: ! euValLeuLeuCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIl 217539 : TGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcgttttttattacatCGCTAT : 217595 158 : aAlaPheAlaThrLysIleIleGluIleGlyAsnGluThrArgIleIleArgLeuLeu : 176 ! !!.!!::!..! !! !||| ! ! !|||! !!.!! !! !.!!! !! !||| eProIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeu 217596 : ACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTG : 217652 177 : ProCysGlyPheTyrLysSerLeuIleSerIleAspValSerProThrTyrGluIleI : 196 !! ! !||| |||! !:!!|||..!! ! ! !!!!|||||| !!||||||: ValPheProPheThrLysTyrIleIleAspThrArgTyrThrProThrAsnGluIleV 217653 : GTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCTACGAACGAAATTG : 217712 197 : leLeuAlaSerGlnPheValSerGlyPheIleAlaAsnSerSerAlaValGlyAlaVa : 215 !:!!! ! !|||!!.:!!:!!||| !:!: !:!!.!!! !.!! !!.!||| alPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCy 217713 : TGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTG : 217769 216 : lGlyMetAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuThrValLeuMetIle : 234 !.!!:!!||||||!.!||||||!.!|||||||||||||||:!! !|||||||||! ! sSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGluValLeuMetAsn 217770 : CAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAAC : 217826 235 : TrpIleLysGluTyrValAsnArgSerLysAspHisSerArgAsnValGlyLeuAsnG : 254 |||:!::!!.!.! :!!:!! !!!!! !||| ||| !!.!|||! ! ..!. TrpLeuGlnHisLeuIleAspGlyArgAlaAspMetSerAspThrValAsp---GlyA 217827 : TGGCTGCAACATTTAATCGACGGTAGAGCGGATATGAGCGATACTGTGGAT---GGTA : 217883 255 : luIleGlyGluIleValGluHisHisLeuArgValLeu{Se} >>>> Target In : 267 .!|||!.!...||||||...!!.|||:!!|||:!!|||{!.} 1229 rgIleAlaSerIleValSerGlnHisValArgIleLeu{Ly}++ 217884 : GAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTA{AA}gt.............. : 217926 268 : tron 1 >>>> {r}PheIleAlaGlyIleGluAspValMetAsnGluIleCysPhe : 281 bp {!}|||:::.!! !! !||| ..!:!:.!.:!!|||! !||| ++{s}PheLeuThrLeuThrGluArgThrLeuGlnGlnIleSerPhe 217927 : ...........ag{a}tttttgaCGCTCACAGAGAGAACCCTCCAGCAAATCTCTTTC : 219193 282 : MetGluLeuPhe{Ly} >>>> Target Intron 2 >>>> {s}CysThrMetA : 290 |||!!!.!.{ } 76 bp {!} ::: AlaGluPheLeu{Gl}-+ ++{y}LysTyrIleT 219194 : GCTGAATTTCTA{GG}at.........................ag{a}aaatatattt : 219296 291 : snMetCysMetIleGlyTyrTyrIleLeuThrGluTrpLysGluHisAspIleGlnTy : 309 ::: ::: ::: !|||||||||..!:!!|||:!! ! yrValAsnLeuTyrLysPheGluTyrGln***GluTrpLysSerAsnAspValThrSe 219297 : acgttaatttgtataaatttgaatatcaatAGGAATGGAAATCGAATGATGTAACGAG : 219353 310 : rMetProAlaTyrLeuIleIleLeuPheSerMetThrPheAsnIlePheValValCys : 328 ! !.!!|||:!!|||:!!|||.!.|||:!:|||||||||||||||::: ||| rAlaValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCys 219354 : TGCAGTGACATACATCATTCTACTTATATCCCTcactttcaacattttcatattttgc : 219410 329 : TyrIleGlyGluThrLeuLysGluGlnCysGlu : 339 ||||||||||||! !:!! |||||| ||| TyrIleGlyGluIleValAlaGluGlnValGlu 219411 : taCATAGGAGAGATCGTTGCTGAACAggtagaa : 219445 vulgar: gi|350422514|ref|XP_003493187.1| 2 339 . KQ414889.1 217132 219445 + 486 M 249 747 G 1 0 M 14 42 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 18 54 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217133 219445 486 + . gene_id 13 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217133 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217133 217923 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219209 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219209 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219210 219211 . + . intron_id 2 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 219210 219285 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219284 219285 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219286 219445 . + . KQ414889.1 exonerate:protein2genome:local exon 219286 219445 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217133 219445 486 + . alignment_id 13 ; Query gi|350422514|ref|XP_003493187.1| ; Align 217133 3 747 ; Align 217880 253 42 ; Align 219154 268 54 ; Align 219287 287 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 456 Query range: 2 -> 269 Target range: 221336 -> 222134 3 : GluSerValArgIleGluGluAsnLeuTyrSerLeuSerAspTyrSerLeuGlnLeuA : 22 ...|||..!|||:!!||| ! :!!! ! ! !!! ! ! ! ! |||:!!||||||! SerSerThrArgValGluTyrAspTyrLysThrAsnValLysLeuSerValGlnLeuS 221337 : TCTTCGACTCGTGTTGAATACGATTACAAGACGAACGTGAAATTGAGCGTGCAATTGA : 221394 23 : snArgTrpPheLeuLysProIleGlyValTrpProLeuSerAlaSerThrSerArgLe : 41 :!||||||.!!|||||||||||||||||||||||| !||||||!:!! !|||! !:! erArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaAsnIleSerThrVa 221395 : GCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGT : 221451 42 : uGluArgIleIleCysPheValLeuIlePheLeuCysTyrPhePheValLeuPheThr : 60 !|||||| !:!!! !!:::!!:!!! ! !!:!!|||||| !.!.:!! !||| ! lGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLeuIleThrPheLeu 221452 : AGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTC : 221508 61 : IleIleProCysLeuLeuHisLeuIleLeuGluAspGluAsnIleArgMetLysLeuL : 80 :!::!!|||||| !|||:!!:!!|||||||||! |||:!!:!! !! !:!:!!| LeuValProCysSerLeuTyrValIleLeuGluValGluAspValTyrAsnArgIleL 221509 : TTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCA : 221568 81 : ysIleLeuGlyProPheSerHisTrpLeuIleGlyGlyIleAsnTyrSerThrLeuLe : 99 ||:!:|||||||||!!.||| !!! :!!!!:!.! !:!!!!.||| ! !|||:! ysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIl 221569 : AATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGAT : 221625 100 : uLeuArgSerArgGluMetArgValCysIleGluHisIleGlnAsnAspTrpLysIle : 118 !||| !..!!.!!!:!!:|||! !|||||||||!.!|||:!! |||||||||! ! eLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTrpAspTrpLysAsn 221626 : ACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAAT : 221682 119 : ValThrArgGlnLysAspGlnGlnValMetMetArgTyrAlaArgIleGlyArgTyrI : 138 :!!||| !...||||||:!!.!.:!!|||!!:..! !!|||! !.!!|||||| : IleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgL 221683 : ATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGAT : 221742 139 : leThrValPheCysThrAlaPheMetGlnValGlyValLeuSerHisCysThrMetAl : 157 !:! !:!!.!!|||||| !|||||| ! !||| ::: ::: ! euIleMetIleCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIl 221743 : TGATCATGATCTGCACATTTTTCATGTACAGTggtttcgttttttattacatAGCCAT : 221799 158 : aAlaPheAlaThrLysIleIleGluIleGlyAsnGluThrArgIleIleArgLeuLeu : 176 ! !!|||::!..! ! !||| !:!! ... ... ! !:!! eProPheSerValGlyLysIleProAlaGlnAspValAsnValThrPheIleProMet 221800 : ACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATG : 221856 177 : ProCysGlyPheTyrLysSerLeuIleSerIleAspValSerProThrTyrGluIleI : 196 !! ! !|||! !:!! !:!!:!!..!! ! !||||||..! !!||||||: ValPheProPheSerArgPheIleValAspThrArgTyrSerProValAsnGluIleL 221857 : GTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTC : 221916 197 : leLeuAlaSerGlnPheValSerGlyPheIleAlaAsnSerSerAlaValGlyAlaVa : 215 !:!!!:!! !|||.!!:!!:!!||| !:!: !:!!|||! !.!! !!.!||| euPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCy 221917 : TGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTG : 221973 216 : lGlyMetAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuThrValLeuMetIle : 234 !.!!:!!!.!|||:!!||||||!.!|||||||||||||||:!! !|||||||||! ! sSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSer 221974 : CAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGC : 222030 235 : TrpIleLysGluTyrValAsnArgSerLysAspHisSerArgAsnValGlyLeuAsnG : 254 |||:!:|||.!.! :!!||| !! !! !||| !!!!.!||||||! ! !... TrpLeuLysHisLeuIleAsnGlyArgAlaAspMetCysAsnAsnValAsp---ArgA 222031 : TGGCTGAAACATTTGATCAACGGCCGGGCGGATATGTGTAACAACGTGGAT---AGGA : 222087 255 : luIleGlyGluIleValGluHisHisLeuArgValLeuSerPheIle : 269 .!|||!.!:!!||||||.!.!!.|||:!!|||:!!|||..!!:!:!! rgIleAlaLysIleValAsnGlnHisValArgIleLeuGlnTyrVal 222088 : GAATAGCGAAGATTGTGAATCAACACGTTCGAATATTGCAGTATGTA : 222134 vulgar: gi|350422514|ref|XP_003493187.1| 2 269 . KQ414889.1 221336 222134 + 456 M 249 747 G 1 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221337 222134 456 + . gene_id 14 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221337 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221337 222134 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221337 222134 456 + . alignment_id 14 ; Query gi|350422514|ref|XP_003493187.1| ; Align 221337 3 747 ; Align 222084 253 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 391 Query range: 3 -> 272 Target range: 226891 -> 227695 4 : SerValArgIleGluGluAsnLeuTyrSerLeuSerAspTyrSerLeuGlnLeuAsnA : 23 |||:!! !! !|||.!.:!!! ! ! ..!! !! !:!! |||:!!|||||||||| SerLeuAlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnA 226892 : TCTCTCGCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATC : 226949 24 : rgTrpPheLeuLysProIleGlyValTrpProLeuSerAlaSerThrSerArgLeuGl : 42 |||||.!.|||||||||:!!|||:!!||||||! !||| !!.!!:!||||||:!!! rgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGl 226950 : GTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGG : 227006 43 : uArgIleIleCysPheValLeuIlePheLeuCysTyrPhePheValLeuPheThrIle : 61 !||| !.!!! !!:::!!:!! !|||||||||||| .!.:!! !||| !:!: yArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeu 227007 : AAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTG : 227063 62 : IleProCysLeuLeuHisLeuIleLeuGluAspGluAsnIleArgMetLysLeuLysI : 81 :!! !! !! !|||:!!:!!:!!||||||! :!!..! ! !! ! !||||||! ValSerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysM 227064 : GTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAA : 227123 82 : leLeuGlyProPheSerHisTrpLeuIleGlyGlyIleAsnTyrSerThrLeuLeuLe : 100 !::!!||||||.!.||| !!:: !!!:..! !:!!!!.||||||! !||| !!! etIleGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPh 227124 : TGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTT : 227180 101 : uArgSerArgGluMetArgValCysIleGluHisIleGlnAsnAspTrpLysIleVal : 119 !!.!..! !!!:!!:! !! !|||:!!|||!..|||:!! |||||||||! !:!! eHisGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIle 227181 : CCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATC : 227237 120 : ThrArgGlnLysAspGlnGlnValMetMetArgTyrAlaArgIleGlyArgTyrIleT : 139 ! ! !! !:!!|||::!.!.||||||:!!! !|||||| ! !|||||| ! :!:! ArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuI 227238 : AGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGA : 227297 140 : hrValPheCysThrAlaPheMetGlnValGlyValLeuSerHisCysThrMetAlaAl : 158 !..!.!!|||||| !|||:!: ... ::: ! !:!:!.! ! leThrIleCysThrPhePheValPheSerSerPheValPhePheTyrIleValValPr 227298 : TCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACC : 227354 159 : aPheAlaThrLysIleIleGluIleGlyAsnGluThrArgIleIleArgLeuLeuPro : 177 !.!! !.!! !! !:!!! !! ! !:!!! !!.!!.!! ! !! !! !:!!||| oIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetPro 227355 : TATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCG : 227411 178 : CysGlyPheTyrLysSerLeuIleSerIleAspValSerProThrTyrGluIleIleL : 197 ! ! !||| |||! !:!! !..!:!! ! !|||||| ! !!||||||.!!! PheProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIlePheP 227412 : TTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCT : 227471 198 : euAlaSerGlnPheValSerGlyPheIleAlaAsnSerSerAlaValGlyAlaValGl : 216 !!:!! !|||||||||!!!|||.!!:!: !:!!.!! !.!! !!.!||| !.! heSerValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSe 227472 : TTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAG : 227528 217 : yMetAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuThrValLeuMetIleTrp : 235 !|||||||||:!!.!!|||!.!|||||||||||||||:!! !||||||:!! !||| rMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrp 227529 : TATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGG : 227585 236 : IleLysGluTyrValAsnArgSerLysAspHisSerArgAsnValGlyLeuAsnGluI : 255 :!: !.!.! :!!:!! !!!!! !||| |||!:!!..:!!! ! :!!..!| LeuGlyHisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAsp---AspArgI 227586 : CTGGGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGAT---GATAGAA : 227642 256 : leGlyGluIleValGluHisHisLeuArgValLeuSerPheIleAlaGlyIle : 272 ||!.!...|||||| ||||||:!!|||:!!|||!.!! !:!!.!! !!||| leAlaSerIleValThrHisHisValArgIleLeuLysCysValThrCysIle 227643 : TCGCTAGCATCGTCACTCACCACGTTCGAATATTGAAGTGTGTAACGTGTATC : 227695 vulgar: gi|350422514|ref|XP_003493187.1| 3 272 . KQ414889.1 226891 227695 + 391 M 248 744 G 1 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226892 227695 391 + . gene_id 15 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226892 227695 . + . KQ414889.1 exonerate:protein2genome:local exon 226892 227695 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226892 227695 391 + . alignment_id 15 ; Query gi|350422514|ref|XP_003493187.1| ; Align 226892 4 744 ; Align 227636 253 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 316 Query range: 300 -> 390 Target range: 272836 -> 273176 301 : GluTrpLysGluHisAspIleGlnTyrMetProAlaTyrLeuIleIleLeuPheSerM : 320 ||||||! !!:||||||.!!||| !:!: !!.!!|||!!!!!:||||||.!.|||| GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 321 : etThrPheAsnIlePheValValCysTyrIleGlyGluThrLeuLysGluGln >>> : 338 |||||||||||||||||:::||||||||||||||||||! !|||! !|||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 339 : > Target Intron 1 >>>> CysGluLysValGlyGluValValTyrMetThrA : 349 70 bp |||:::|||:::|||||||||||||||||||||| ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 350 : snTrpTyrTyrLeuProTyrLysAspIleLeuAsnLeuIleGlnIleIleLeuArgSe : 368 ||||||||||||||||| !||||||||||||:!!|||||| !||||||! !|||!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 369 : rSerMetMetIleLysIleThrAlaGlyLysLeuValHisMetSerIlePheThrPhe : 387 !|||:!::!!||||||||||||||||||!:!:!!|||! !||||||:!:!:!|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 388 : GlyAsnVal : 390 |||:!!||| GlyAspVal 273166 : GGCGATGTA : 273176 vulgar: gi|350422514|ref|XP_003493187.1| 300 390 . KQ414889.1 272836 273176 + 316 M 37 111 5 0 2 I 0 66 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273176 316 + . gene_id 16 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273176 316 + . alignment_id 16 ; Query gi|350422514|ref|XP_003493187.1| ; Align 272837 301 111 ; Align 273018 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 304 Query range: 17 -> 212 Target range: 294690 -> 295275 18 : SerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerAlaS : 37 ||||||:!!! ! !||| !!.!.|||||||||||||||:!!|||||||||! ! !| SerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrS 294691 : AGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACA : 294748 38 : er<->ThrSerArgLeuGluArgIleIleCysPheValLeuIlePheLeuCysTyrPh : 55 || ||||||!:!|||.!.!:!:!!:!!! .!.:!!|||||| ! !||| !! erHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLe 294749 : GTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTT : 294805 56 : ePheValLeuPheThrIleIleProCysLeuLeuHisLeuIleLeuGluAspGluAsn : 74 . !|||||||||..!:!!:!:|||||| !! ! !! !:!!!!!.!.! :::||| uThrValLeuPheValLeuValProCysGlyTyrPheCysValPheHisValLysAsn 294806 : GACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaac : 294862 75 : IleArgMetLysLeuLysIleLeuGlyProPheSerHisTrpLeuIleGlyGlyIleA : 94 :::::::::|||:!!|||:!!||||||||| ! !:!!! :!!:!!..! !:!!! ValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuA 294863 : gtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCA : 294922 95 : snTyrSerThrLeuLeuLeuArgSerArgGluMetArgValCysIleGluHisIleGl : 113 ..|||||| !|||:!!|||!:!!!!! !! !.!.!:! !||||||||| !!|||:! rgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCysIleGluAspIleGl 294923 : GGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGA : 294979 114 : nAsnAspTrpLysIleValThrArgGlnLysAspGlnGlnValMetMetArgTyrAla : 132 !||||||||||||:!::!! !!.!! !:!! !!!:! !:!!|||!!:!:! !!||| uAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIleMetIleLysAsnAla 294980 : GAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCG : 295036 133 : ArgIleGlyArgTyrIleThrValPheCysThrAlaPheMetGlnValGlyValLeuS : 152 ! !:!! !!:! !!:|||||| !! !||| !.!.!!: ! !..!!.!:!!| MetValThrGlnArgMetThrValAlaPheThrIleIleIleTyrSerSerAlaValS 295037 : ATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGT : 295096 153 : erHisCysThrMetAlaAlaPheAlaThrLysIleIleGluIleGlyAsnGluThrAr : 171 ||:!! !.!!!!:!.. ||| :::... :!:||| ..!!!.:!!!.!!. erTyrHisAlaIleValProPhePheSerAsnAlaLeuGlu---AsnLysLysAsnAs 295097 : CGTATCACGCCATTGtgccatttttttcaaacgctTTGGAG---AACAAGAAGAATAA : 295150 172 : gIleIleArgLeuLeuProCysGlyPheTyrLysSerLeuIleSerIleAspValSer : 190 !! |||||| !|||||| ! ! !|||:!!! !!!!:!!..! ! !! !||| nThrIleArgAlaLeuProIleProGlyTyrGluLeuPheValAspAlaTyrSerSer 295151 : TACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGT : 295207 191 : ProThrTyrGluIleIleLeuAlaSerGlnPheValSerGlyPheIleAlaAsnSerS : 210 |||||||||||||||||| !.!! !! ||||||! !..!|||.!!!.!|||!.!! ProThrTyrGluIleIleArgThrHisLeuPheValTyrSerPhePheValAsnLysT 295208 : CCTACCTACGAGATCATAAGAACTCATCTCTTTGTTTACTCGTTCTTCGTCAACAAAA : 295267 211 : erAlaVal : 212 !!!.!||| hrGlyVal 295268 : CTGGTGTC : 295275 vulgar: gi|350422514|ref|XP_003493187.1| 17 212 . KQ414889.1 294690 295275 + 304 M 20 60 G 0 3 M 128 384 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294691 295275 304 + . gene_id 17 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294691 295275 . + . KQ414889.1 exonerate:protein2genome:local exon 294691 295275 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294691 295275 304 + . alignment_id 17 ; Query gi|350422514|ref|XP_003493187.1| ; Align 294691 18 60 ; Align 294754 38 384 ; Align 295138 167 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 289 Query range: 16 -> 266 Target range: 289735 -> 290479 17 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerA : 36 |||!!!!!!:!!||| !!.!|||.!!|||||||||||||||:!!!::|||!!! ! TyrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrProPheValP 289736 : TACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCT : 289793 37 : laSer<->ThrSerArgLeuGluArgIleIleCysPheValLeuIlePheLeuCysTy : 54 !||| .!!||||||! !||||||! ! ! :!!||||||.!.:!!|||! heSerArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLeuValCysCy 289794 : TTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTG : 289850 55 : rPhePheValLeuPheThrIleIleProCysLeuLeuHisLeuIleLeuGluAspGlu : 73 !! .!!:!!! !|||! !|||:!!|||! ! !! !|||:!!:!!!!!...|||.!. sSerIleLeuGlnPheIleIleValProPheSerHisHisValLeuPheSerAspAsn 289851 : CTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAAC : 289907 74 : AsnIleArgMetLysLeuLysIleLeuGlyProPheSerHisTrpLeuIleGlyGlyI : 93 :!!!!:!.!! ! :!!|||! !|||||||||!!.!!! !!! |||! ! ! !. AspMetAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuThrThrPheP 289908 : GACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCT : 289967 94 : leAsnTyrSerThrLeuLeuLeuArgSerArgGluMetArgValCysIleGluHisIl : 112 !!!!.|||!!! !!!! !:!!!:!.!! !! !!!: !! !|||:!::!!||||| heLysTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysValLysHisIl 289968 : TCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACAT : 290024 113 : eGlnAsnAspTrpLysIleValThrArgGlnLysAspGlnGlnValMetMetArgTyr : 131 |:!!!..|||||||||!!::!! ! !:!! ! !!!:: :!!|||:!:|||||| eGluArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMetLeuArgTyr 290025 : CGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATAC : 290081 132 : AlaArgIleGlyArgTyrIleThrValPheCysThrAlaPheMetGlnValGlyValL : 151 !.!! !!!:.!!||| !!:!!! ! !.!.|||.!! !|||:!! ! :!!|||! !| ValThrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyL 290082 : GTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTC : 290141 152 : euSerHisCysThrMetAlaAlaPheAlaThrLysIleIleGluIleGlyAsnGluTh : 170 |||||:!! !|||:!: ! !!!!. !:!!|||! ! !! !! !||||||! !|| euSerTyrAsnThrValIleProLeuPheSerLysLysSerValAsnGlyAsnValTh 290142 : TGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGGTAACGTGAC : 290198 171 : rArgIleIleArgLeuLeuProCysGlyPheTyrLysSerLeuIleSerIleAspVal : 189 | ||||||! !||| !!! ! ! !|||:!!..!!!!.!!..!:!!.!. ! r------IleArgProLeuThrTyrProGlyTyrGluGluPhePheAspValGlnLys 290199 : T------ATCAGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAG : 290249 190 : SerProThrTyrGluIleIleLeuAlaSerGlnPheValSerGlyPheIleAlaAsnS : 209 ||||||.!!|||||||||:!!!!!..!! !!!.! !|||! !! !.!.|||.!! ! SerProAlaTyrGluIleValPheCysMetHisCysValTyrValMetIleThrAlaA 290250 : AGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGA : 290309 210 : erSerAlaValGlyAlaValGlyMetAlaAlaValPheAlaAlaHisAlaCysGlyGl : 228 :!! !.!!:!!!.!||| !.!!:!!.!!.!!:!!||||||.!!|||.!!|||||||| snIleThrMetAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGl 290310 : ACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCA : 290366 229 : nLeuThrValLeuMetIleTrpIleLysGluTyrValAsnArgSerLysAspHisSer : 247 |:!!! !:!!! !! !! !!:!::!!!!: ..!!!.|||.!!! ! ..! nIleLysIleGlnThrThrArgLeuGluAspLeuThrLysArgGlyMetLeuLeuGlu 290367 : GATTAAGATACAAACGACGCGGCTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAG : 290423 248 : ArgAsnValGlyLeuAsnGluIleGlyGluIleValGluHisHisLeuArgValLeu : 266 !:!...|||.!! :!!...:!:!.!! :!!|||... !|||:!!..!:!!||| LysGlyValSer---AspArgLeuAlaValValValSerGlyHisValGluIleLeu 290424 : AAGGGAGTGAGT---GATCGTTTGGCGGTTGTTGTGAGCGGTCACGTGGAGATCTTG : 290479 vulgar: gi|350422514|ref|XP_003493187.1| 16 266 . KQ414889.1 289735 290479 + 289 M 21 63 G 0 3 M 133 399 G 2 0 M 79 237 G 1 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289736 290479 289 + . gene_id 18 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289736 290479 . + . KQ414889.1 exonerate:protein2genome:local exon 289736 290479 . + . insertions 3 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 289736 290479 289 + . alignment_id 18 ; Query gi|350422514|ref|XP_003493187.1| ; Align 289736 17 63 ; Align 289802 38 399 ; Align 290201 173 237 ; Align 290438 253 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 269 Query range: 16 -> 265 Target range: 204236 -> 204974 17 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerA : 36 |||:!! !!::!!! !:! !.!!||| ! !:!!|||!.!||||||:!! !!! TyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaTrpProIleProV 204237 : TACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGTGGCCGATTCCAG : 204294 37 : laSerThrSerArgLeuGluArgIleIleCysPheValLeuIlePheLeuCysTyrPh : 55 .!!:!:!!|||! !!!! !|||:!!:!! ! :!! ! ! ! :!! !||||| alAsnSerSerProPheThrArgLeuValArgArgIleGluHisValValThrTyrPh 204295 : TGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGTAGTCACCtattt : 204351 56 : ePheValLeuPheThrIleIleProCysLeuLeuHisLeuIleLeuGluAspGluAsn : 74 |... ...... !|||:!!||| !!||||||:!!:!!.!!|||:!!!!::!!||| eLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheLeuLysGluLysAsn 204352 : cctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAGAAC : 204408 75 : IleArgMetLysLeuLysIleLeuGlyProPheSerHisTrpLeuIleGlyGlyIleA : 94 !!:!!!::::||||||||||||||||||.!! !:!!!! !||| ! !.!!! GlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSerIleGlnPhePheL 204409 : GGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCATACAGTTCTTCA : 204468 95 : snTyrSerThrLeuLeuLeuArgSerArgGluMetArgValCysIleGluHisIleGl : 113 !.||||||..!:!!|||! !|||! ! !:!!!!:!:! ! !!:!:.!. !|||:: ysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSerLeuAsnThrIleAr 204469 : AGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGTTTGAACACCATCAG : 204525 114 : nAsnAspTrpLysIleValThrArgGlnLysAspGlnGlnValMetMetArgTyrAla : 132 !..!|||||| |||! !.!!! !.!.:!!:!!!:! !:!!.!. ! ! ||| gArgAspTrp---IleGluAlaThrAspGluAsnArgLeuIlePheArgSerLysAla 204526 : ACGCGACTGG---ATAGAGGCTACGGATGAAAATCGGTTGATTTTCCGCTCGAAAGCG : 204579 133 : ArgIleGlyArgTyrIleThrValPheCysThrAlaPheMetGlnValGlyValLeuS : 152 !:!||||||||| :!: !:!!.!!....!!||| !||| ! ! !|||! !|||! LysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetTyrGlyGlyGlyLeuC 204580 : AAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGTACGGCGGTGGTTTGT : 204639 153 : erHisCysThrMetAlaAlaPheAlaThrLysIleIleGluIleGlyAsnGluThrAr : 171 !!:!! ! |||!!: ! !!!!. !! ! !! ||| :!! ! !!!:!.! ysTyrArgThrIleLeuProLeuLeuArgGlyThrIle---ValThrProAspAsnVa 204640 : GTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATC---GTAACACCTGATAACGT : 204693 172 : gIleIleArgLeuLeuProCysGlyPheTyrLysSerLeuIleSerIleAspValSer : 190 !! !||||||! !||||||||| ! !!||| ......::: .!. !||| lThrIleArgProLeuProCysProValTyrPheValPhePheAsnGluGlnArgSer 204694 : TACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaacGAGCAACGTTCG : 204750 191 : ProThrTyrGluIleIleLeuAlaSerGlnPheValSerGlyPheIleAlaAsnSerS : 210 |||!.!|||||||||:!!!!! ! !|||.!!:!!:!!||||||:!!.!! !!:!! ProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheValThrTyrAlaV 204751 : CCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTGTTACTTACGCTG : 204810 211 : erAlaValGlyAlaValGlyMetAlaAlaValPheAlaAlaHisAlaCysGlyGlnLe : 229 ! ! !|||.!! !||||||..!|||:!!|||!.! !|||||||||.!!..!|| alIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAlaCysSerMetLe 204811 : TTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGCGTGCAGCATGCT : 204867 230 : uThrValLeuMetIleTrpIleLysGluTyrValAsnArgSerLysAspHisSerArg : 248 |! !:!!|||:!!! ! !!!:!!.! ! !|||:!!!:!:!! ||| !!!..! uArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAla---AspMetThrGlu 204868 : GAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCG---GACATGACCGAG : 204921 249 : AsnValGlyLeuAsnGluIleGlyGluIleValGluHisHisLeuArgVal : 265 !..:!!! !! !!..:!!|||!.!!!:|||||||||:!!!!. !!:!:!! ThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrLysIle 204922 : ACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGAAGATA : 204974 vulgar: gi|350422514|ref|XP_003493187.1| 16 265 . KQ414889.1 204236 204974 + 269 M 100 300 G 1 0 M 47 141 G 1 0 M 78 234 G 1 0 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204237 204974 269 + . gene_id 19 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204237 204974 . + . KQ414889.1 exonerate:protein2genome:local exon 204237 204974 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 204237 204974 269 + . alignment_id 19 ; Query gi|350422514|ref|XP_003493187.1| ; Align 204237 17 300 ; Align 204537 118 141 ; Align 204678 166 234 ; Align 204912 245 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 260 Query range: 300 -> 393 Target range: 244441 -> 244826 301 : GluTrpLysGluHisAspIleGlnTyrMetProAlaTyrLeuIleIleLeuPheSerM : 320 |||||| !||| !||| !:!! !:!: !.!!|||!!!||| !||| !!:!!! GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheIleAlaLeuValAlaI 244442 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTATAGCACTCGTTGCTA : 244499 321 : etThrPheAsnIlePheValValCysTyrIleGlyGluThrLeuLysGluGln >>> : 338 !:..!! !|||! !|||:!!:!!|||||||||.!!!!:! !|||! !|||||| leValSerAsnThrPheIleLeuCysTyrIleSerAspArgLeuThrGluGln++ 244500 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGACAGGCTGACAGAACAGgt... : 244555 339 : > Target Intron 1 >>>> CysGluLysValGlyGluValValTyrMetThrA : 349 106 bp ||| !|||||||||||||||||||||||||||: ++CysLeuLysValGlyGluValValTyrMetThrA 244556 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 244692 350 : snTrpTyrTyrLeuProTyrLysAspIleLeuAsnLeuIleGlnIleIleLeuArgSe : 368 !!||||||||||||||| ! !:! ||||||:!!||||||! !|||||| !||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSe 244693 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATC : 244749 369 : rSerMetMetIleLysIleThrAlaGlyLysLeuValHisMetSerIlePheThrPhe : 387 |!:!|||:!::!!:!!|||||||||||||||:!!:!!|||||||||:!!!:!|||||| rAsnMetValValGluIleThrAlaGlyLysValLeuHisMetSerLeuTyrThrPhe 244750 : GAACATGGTCGTTGAAATCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTC : 244806 388 : GlyAsnValIleLysThr : 393 |||:!!|||! !:!!||| GlyAspValSerGluThr 244807 : GGCGATGTAAGTGAAACT : 244826 vulgar: gi|350422514|ref|XP_003493187.1| 300 393 . KQ414889.1 244441 244826 + 260 M 37 111 5 0 2 I 0 102 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244442 244826 260 + . gene_id 20 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244442 244552 . + . KQ414889.1 exonerate:protein2genome:local exon 244442 244552 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244553 244554 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244553 244658 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244657 244658 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244659 244826 . + . KQ414889.1 exonerate:protein2genome:local exon 244659 244826 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244442 244826 260 + . alignment_id 20 ; Query gi|350422514|ref|XP_003493187.1| ; Align 244442 301 111 ; Align 244659 338 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 260 Query range: 300 -> 393 Target range: 254071 -> 254442 301 : GluTrpLysGluHisAspIleGlnTyrMetProAlaTyrLeuIleIleLeuPheSerM : 320 ||||||! !||| !||| !||| :!: !.!!|||:!!:!!! !||| !!:!!: GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaV 254072 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTG : 254129 321 : etThrPheAsnIlePheValValCysTyrIleGlyGluThrLeuLysGluGln >>> : 338 !:..! ||| |||::::::|||||||||.!!!!:! !|||! !|||||| alValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 254130 : TTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt... : 254185 339 : > Target Intron 1 >>>> CysGluLysValGlyGluValValTyrMetThrA : 349 92 bp ||| !|||||||||||||||||||||||||||: ++CysLeuLysValGlyGluValValTyrMetThrA 254186 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 254308 350 : snTrpTyrTyrLeuProTyrLysAspIleLeuAsnLeuIleGlnIleIleLeuArgSe : 368 !!||||||||||||||| ! !:! ||||||:!!||||||! !|||||| !||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSe 254309 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATC : 254365 369 : rSerMetMetIleLysIleThrAlaGlyLysLeuValHisMetSerIlePheThrPhe : 387 |!:!:!!:!::!!:!!|||||||||||||||::: |||||||||:!!!:!|||||| rAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPhe 254366 : GAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTC : 254422 388 : GlyAsnValIleLysThr : 393 |||:!!|||! !:!!||| GlyAspValSerGluThr 254423 : GGCGATGTAAGTGAAACT : 254442 vulgar: gi|350422514|ref|XP_003493187.1| 300 393 . KQ414889.1 254071 254442 + 260 M 37 111 5 0 2 I 0 88 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254072 254442 260 + . gene_id 21 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254072 254182 . + . KQ414889.1 exonerate:protein2genome:local exon 254072 254182 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254183 254184 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254183 254274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254273 254274 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254275 254442 . + . KQ414889.1 exonerate:protein2genome:local exon 254275 254442 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254072 254442 260 + . alignment_id 21 ; Query gi|350422514|ref|XP_003493187.1| ; Align 254072 301 111 ; Align 254275 338 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 260 Query range: 180 -> 390 Target range: 300222 -> 302036 181 : TyrLysSerLeuIleSerIleAspValSerProThrTyrGluIleIleLeuAlaSerG : 200 ||| ! !!!!!!|||..!! !.!...!||||||||||||||||||:::... . TyrAspTrpPheIleAspThrGlnThrSerProThrTyrGluIleValPhePhePheH 300223 : TACGATTGGTTTATCGATACACAAACCAGTCCTACCTACGAgatcgtatttttctttc : 300280 201 : lnPheValSerGlyPheIleAlaAsnSerSerAlaValGlyAlaValGlyMetAlaAl : 219 .. !!:!!!.!.!.||| ! !!!:! !.!!..!!.!||| !.!!:!!||||| isCysPheAlaAlaMetIleMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAl 300281 : actgttTCGCAGCGATGATCATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGC : 300337 220 : aValPheAlaAlaHisAlaCysGlyGlnLeuThrValLeuMetIleTrpIleLysGlu : 238 |:!!|||!.!.!!||| !|||||||||:!! !:!!! !||| ! :!::!!!!: aIlePheValThrHisIleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAsp 300338 : GATATTCGTCACTCATATCTGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGAT : 300394 239 : TyrValAsnArgSerLysAspHisSerArgAsnValGlyLeuAsnGluIleGlyGluI : 258 |||.!.|||!!! !!!: !:!:!!! !|||! !:!! :!:! !! | LeuValGluArgThrGlyGlu------LysAspAspGlyProAspProLeuValValI 300395 : CTGGTGGAGAGGACGGGAGAG------AAGGACGACGGTCCTGATCCTTTGGTCGTTA : 300448 259 : leValGluHisHisLeuArgValLeu{Se} >>>> Target Intron 1 >>>> : 267 |||||..! !!|||:!!!:!||||||{!!} 1110 bp leValArgAspHisValLysValLeu{Ar}++ + 300449 : TCGTTCGAGATCACGTGAAGGTTTTA{AG}gt.........................a : 301585 268 : {r}PheIleAlaGlyIleGluAspValMetAsnGluIleCysPheMetGluLeuPhe : 285 {!} ! ..!..!.!!... ! !! !.!.:!!||| ::: ||| +{g}AspProCysSerPheArg***ProThrPheHisLeuCysAlaValIleLysPhe 301586 : g{A}GACCCGTGTTCCTTCCGTTAGCCAACTTTTCATCTCTGCgctgtaattaaattt : 301639 286 : LysCysThrMetAsnMetCysMetIleGlyTyrTyrIleLeuThrGluTrpLysGluH : 305 ::: |||:!:||| .!.:!! !! ! !!!! !||||||:!!.!. GluSerThrLeuAsnAlaLysPheLeuArgValIle***Phe***GluTrpGlnAsnS 301640 : gaatctACTTTAAATGCAAAGTTTTTACGAGTAATTTGATTTTAGGAATGGCAAAATA : 301699 306 : isAspIleGlnTyrMetProAlaTyrLeuIleIleLeuPheSerMetThrPheAsnIl : 324 !|||! !||| !.!!!:!!!!! !:!:||| |||.!.||||||||||| erAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAsnIl 301700 : GCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATAT : 301756 325 : ePheValValCysTyrIleGlyGluThrLeuLysGluGln >>>> Target Intr : 338 ||||:!! !!|||||||||||||||! !|||...|||||| 80 bp ePheIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301757 : ATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt................ : 301800 339 : on 2 >>>> CysGluLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLe : 353 |||...:!!:!!|||..!!.! !||| !! !:!!|||||| !!|| ++CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLe 301801 : .........agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTT : 301923 354 : uProTyrLysAspIleLeuAsnLeuIleGlnIleIleLeuArgSerSerMetMetIle : 372 |||| ||| !! !:!!||||||! !:!!! !:!!! !|||..! ! uProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProPro 301924 : ACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCG : 301980 373 : LysIleThrAlaGlyLysLeuValHisMetSerIlePheThrPheGlyAsnVal : 390 |||:!!||||||||||||:!!:!! !!:!:|||:!: !||||||.!!::!||| LysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301981 : AAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: gi|350422514|ref|XP_003493187.1| 180 390 . KQ414889.1 300222 302036 + 260 M 65 195 G 2 0 M 19 57 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 70 210 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300223 302036 260 + . gene_id 22 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300223 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300223 300476 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300223 302036 260 + . alignment_id 22 ; Query gi|350422514|ref|XP_003493187.1| ; Align 300223 181 195 ; Align 300418 248 57 ; Align 301588 268 210 ; Align 301878 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 227 Query range: 335 -> 390 Target range: 277548 -> 277713 336 : GluGlnCysGluLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProT : 355 ..!||||||:!!||||||||||||||||||||||||||||||||||||||||||||| ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 356 : yrLysAspIleLeuAsnLeuIleGlnIleIleLeuArgSerSerMetMetIleLysIl : 374 !!||||||||||||||||||:!!! ||||||! !|||||||||::::::|||||||| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 375 : eThrAlaGlyLysLeuValHisMetSerIlePheThrPheGlyAsnVal : 390 ||||||||||||||||:::...||||||:!:!:!|||||||||:!!||| eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspVal 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTA : 277713 vulgar: gi|350422514|ref|XP_003493187.1| 335 390 . KQ414889.1 277548 277713 + 227 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277713 227 + . gene_id 23 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277549 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277713 227 + . alignment_id 23 ; Query gi|350422514|ref|XP_003493187.1| ; Align 277549 336 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 223 Query range: 336 -> 390 Target range: 264723 -> 264885 337 : GlnCysGluLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProTyrL : 356 ||||||:!!||||||||||||||||||||||||:!!|||||||||||||||||||||| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 357 : ysAspIleLeuAsnLeuIleGlnIleIleLeuArgSerSerMetMetIleLysIleTh : 375 |||||||||||:!!||||||! ||||||||||||||||||:!!:!!.!!|||.!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 376 : rAlaGlyLysLeuValHisMetSerIlePheThrPheGlyAsnVal : 390 ||||||||||:!!:!!|||||||||!!:!:!||||||.!!:!!||| rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: gi|350422514|ref|XP_003493187.1| 336 390 . KQ414889.1 264723 264885 + 223 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264885 223 + . gene_id 24 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264885 223 + . alignment_id 24 ; Query gi|350422514|ref|XP_003493187.1| ; Align 264724 337 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 218 Query range: 300 -> 390 Target range: 224323 -> 224658 301 : GluTrpLysGluHisAspIleGlnTyrMetProAlaTyrLeuIleIleLeuPheSerM : 320 ||||||...... !!:!! ! ! !.!!|||!!!|||:!!|||.!.|||: GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 321 : etThrPheAsnIlePheValValCysTyrIleGlyGluThrLeuLysGluGln >>> : 338 ::|||||||||||||||::: ||||||||||||||| !:!! |||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln++ 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggt... : 224437 339 : > Target Intron 1 >>>> CysGluLysValGlyGluValValTyrMetThrA : 349 65 bp |||||||||:::|||::!||| !||||||! !: ++CysGluLysIleGlyGlnValSerTyrMetIleA 224438 : ......................agtgtgaaaaaattggacaAGTGTCGTACATGATCG : 224533 350 : snTrpTyrTyrLeuProTyrLysAspIleLeuAsnLeuIleGlnIleIleLeuArgSe : 368 !!|||||| ||| !! !!. ! ! !||| !! !|||! !|||||| !! !|| spTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 224534 : ACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGATGTC : 224590 369 : rSerMetMetIleLysIleThrAlaGlyLysLeuValHisMetSerIlePheThrPhe : 387 |!:! !||||||:!:|||||||||!!.:!!|||.!.:!!!!!:!! !|||||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThrPhe 224591 : CAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACTTTC : 224647 388 : GlyAsnVal : 390 |||:!!||| GlyAspVal 224648 : GGTGACGTA : 224658 vulgar: gi|350422514|ref|XP_003493187.1| 300 390 . KQ414889.1 224323 224658 + 218 M 37 111 5 0 2 I 0 61 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224658 218 + . gene_id 25 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224658 218 + . alignment_id 25 ; Query gi|350422514|ref|XP_003493187.1| ; Align 224324 301 111 ; Align 224500 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 207 Query range: 336 -> 396 Target range: 238625 -> 238805 337 : GlnCysGluLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProTyrL : 356 |||||| !|||||||||||||||||||||||||||:!!||||||||||||||| ! ! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 357 : ysAspIleLeuAsnLeuIleGlnIleIleLeuArgSerSerMetMetIleLysIleTh : 375 :! ||||||:!!||||||! !|||||| !||||||!:!:!!:!::!!|||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 376 : rAlaGlyLysLeuValHisMetSerIlePheThrPheGlyAsnValIleLysThrAla : 394 ||||||||||:!!:!!|||||||||:!!!:!|||||||||:!!|||! !:!!||| ! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 395 : CysAla : 396 !||| LeuAla 238798 : CTTGCT : 238805 vulgar: gi|350422514|ref|XP_003493187.1| 336 396 . KQ414889.1 238625 238805 + 207 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238805 207 + . gene_id 26 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238805 207 + . alignment_id 26 ; Query gi|350422514|ref|XP_003493187.1| ; Align 238626 337 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 193 Query range: 16 -> 162 Target range: 299689 -> 300129 17 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpPro<->LeuS : 35 |||!!!||||||:!! !!:!|||!!.|||||||||||||||||||||! ! |||. TyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpArgLeuLeuA 299690 : TACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGCGATTGCTAG : 299747 36 : erAlaSerThrSerArgLeuGluArgIleIleCysPheValLeuIlePheLeuCysTy : 54 .! ! !!:!!|||!:!||||||!.!:!!:!!! .!!||||||!!: :!!|||!: spGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMetThrIleCysPh 299748 : ATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATGACAATATGCTT : 299804 55 : rPhePheValLeuPheThrIleIleProCysLeuLeuHisLeuIleLeuGluAspGlu : 73 !! ! !:!!!!!|||! !:!!:!:|||! ! !! !:!!:!!.!!!!!! !!!::!! eSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePhePheAlaGluLys 299805 : CTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCTTCGCGGAGAAA : 299861 74 : AsnIleArgMetLysLeuLysIleLeuGlyProPheSerHisTrpLeuIleGlyGlyI : 93 !:!|||!.!:!:|||:!!|||:!!!!!|||||| !!.!! !!! ||| !..! !: SerIleHisValLysValLysValPheGlyProValGlyPheCysLeuSerSerIleV 299862 : AGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCATCG : 299921 94 : leAsnTyrSerThrLeuLeuLeuArgSerArgGluMetArgValCysIleGluHisIl : 112 !!!!.|||!!! !|||! !|||!.!.!! !!! !.!...! !||||||:!!|||:! alLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCysIleGlnHisVa 299922 : TCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGCATCCAACACGT : 299978 113 : eGlnAsnAspTrpLysIleValThrArgGlnLys--AspGlnGlnValMetMetArgT : 131 !:!!!..||| ... ::!## !!!:: !:!!|||:!!|||| lGluArgAsp---UnkUnkUnkUnkUnkUnkArg##HisArgThrIleMetLeuArgT 299979 : CGAGAGAGAC---NNNNNNNNNNNNNNNNTTCGAATCATCGTACGATCATGTTGAGAT : 300034 132 : yrAlaArgIleGlyArgTyrIleThrValPheCysThrAlaPheMetGlnValGlyVa : 150 ||!.!! !!!:.!!||| !!:!:|||..! ! |||.!!!.!|||:!: ! !.!|||! yrValThrMetSerArgAsnLeuThrThrValCysAlaValPheLeuTyrAlaGlyGl 300035 : ACGTGACTATGAGCAGAAATCTGACGACCGTGTGCGCCGTGTTTCTTTACGCAGGTGG : 300091 151 : lLeuSerHisCysThrMetAlaAlaPheAlaThrLys : 162 !:!!|||:!! !|||:!! ! !||| !:!!||| yMetSerTyrHisThrValMetGlnPheLeuSerLys 300092 : TATGTCGTATCACACGGTGATGCAGTTCTTATCGAAG : 300129 vulgar: gi|350422514|ref|XP_003493187.1| 16 162 . KQ414889.1 299689 300129 + 193 M 17 51 G 0 3 M 82 246 G 1 0 M 7 21 F 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299690 300129 193 + . gene_id 27 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299690 300129 . + . KQ414889.1 exonerate:protein2genome:local exon 299690 300129 . + . insertions 3 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local similarity 299690 300129 193 + . alignment_id 27 ; Query gi|350422514|ref|XP_003493187.1| ; Align 299690 17 51 ; Align 299744 34 246 ; Align 299990 117 21 ; Align 300013 124 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 191 Query range: 335 -> 390 Target range: 283273 -> 283438 336 : GluGlnCysGluLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProT : 355 ..!||||||:!!||||||||||||||||||||||||||||||! !!:!||||||||| ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 356 : yrLysAspIleLeuAsnLeuIleGlnIleIleLeuArgSerSerMetMetIleLysIl : 374 !!||||||||||||||||||:!!! ||||||! !|||||||||::::::|||||||| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 375 : eThrAlaGlyLysLeuValHisMetSerIlePheThrPheGlyAsnVal : 390 |||||||...||||||:::...|||||| !:!||||||! !:!!||| eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspVal 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTA : 283438 vulgar: gi|350422514|ref|XP_003493187.1| 335 390 . KQ414889.1 283273 283438 + 191 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283438 191 + . gene_id 28 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283438 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283438 191 + . alignment_id 28 ; Query gi|350422514|ref|XP_003493187.1| ; Align 283274 336 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 190 Query range: 14 -> 231 Target range: 194165 -> 194807 15 : SerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProL : 34 !!!!!:|||:!!:!!!:!:!! !:! !.!!|||! !|||||||||:!!|||||| ThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpPro- 194166 : ACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCA- : 194223 35 : euSerAlaSerThrSerArgLeuGluArgIleIleCysPheValLeuIlePheLeuCy : 53 !..! !|||! !! !!!:|||:!! ! |||!.!! !! ! !:!! -----ArgGluAspSerLeuArgAspArgValArgLeuPheAlaGlnThrGlyValVa 194224 : -----AGGGAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGT : 194274 54 : sTyrPhePheValLeuPheThrIleIleProCysLeuLeuHisLeuIleLeuGluAsp : 72 !!:! !!!.:!!! !||| !:!::!!||| !:!!:!!:!! ! !!!!!!: ! lPheAlaLeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCys 194275 : CTTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGC : 194331 73 : GluAsnIleArgMetLysLeuLysIleLeuGlyProPheSerHisTrpLeuIleGlyG : 92 |||:!!:!:! !! ! ! :!!|||:!!:!!!.! !! ! ! ! |||:!:!.! GluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaI 194332 : GAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGA : 194391 93 : lyIleAsnTyrSerThrLeuLeuLeuArgSerArgGluMetArgValCysIleGluHi : 111 !|||!!.!:!!!!|||:!!:!!:!!!.!!!!!:!|||!!:||| !!|||:!: !.! leIleLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGl 194392 : TCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGA : 194448 112 : sIleGlnAsnAspTrpLysIleValThrArgGlnLysAspGlnGlnValMetMetArg : 130 .!!::!!!...!.!::!:! !||| ! !!:!!:!!|||!:!|||||||||! !!.! uMetGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsn 194449 : GATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAAT : 194505 131 : TyrAlaArgIleGlyArgTyrIleThrValPheCysThrAlaPheMetGlnValGlyV : 150 ! !|||!:!|||||||||!:!.!!|||..!.!.! ! !!.!.!! ! ! !|||! CysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyA 194506 : TGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCG : 194565 151 : alLeuSer<->HisCysThrMetAlaAlaPheAlaThrLysIleIleGluIleGlyAs : 168 .!||| !! ||| !! !:!: !! !.!.:!! !!:!|||:!!:!! ! !|| laLeuProTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGluAspAs 194566 : CTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAA : 194622 169 : nGluThrArgIleIleArgLeuLeuProCysGlyPheTyrLysSerLeuIleSerIle : 187 |...|||!:!||| ! !||||||! ! ! ! !! ! !!!!.!!:!!||| nSerThrGlnIle------ProLeuProTyrLeuSerAsnTyrValPhePheAlaIle 194623 : CAGTACTCAGATA------CCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATC : 194673 188 : AspValSerProThrTyrGluIleIleLeuAlaSerGlnPheValSerGlyPheIleA : 207 !!:! !||||||! !|||||||||! !!!!!.!||||||.!.:!!! !.!! !||| GluAspSerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleI 194674 : GAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCA : 194733 208 : laAsnSerSerAlaValGlyAlaValGlyMetAlaAlaValPheAlaAlaHisAlaCy : 226 ! |||!!! ! !||| ! !.!!:!!!.!|||..!.!! ! !|||..!|| leLeuSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCy 194734 : TATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTG : 194790 227 : sGlyGlnLeuThrVal : 231 |||| !!!! !||| sGlyLeuPheGluVal 194791 : TGGCTTGTTCGAAGTG : 194807 vulgar: gi|350422514|ref|XP_003493187.1| 14 231 . KQ414889.1 194165 194807 + 190 M 19 57 G 2 0 M 117 351 G 0 3 M 20 60 G 2 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194166 194807 190 + . gene_id 29 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194166 194807 . + . KQ414889.1 exonerate:protein2genome:local exon 194166 194807 . + . insertions 3 ; deletions 4 KQ414889.1 exonerate:protein2genome:local similarity 194166 194807 190 + . alignment_id 29 ; Query gi|350422514|ref|XP_003493187.1| ; Align 194166 15 57 ; Align 194223 36 351 ; Align 194577 153 60 ; Align 194637 175 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 184 Query range: 300 -> 403 Target range: 206050 -> 207601 301 : GluTrpLysGluHisAspIleGlnTyrMetProAlaTyrLeuIleIleLeuPheSerM : 320 ||||||:!!.!.:!!:!!! ! ! :!: !!.!|||:!!! :!:! !.!.||| GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 321 : etThrPheAsnIlePheValValCysTyrIleGlyGluThrLeuLysGluGln >>> : 338 |||||| !:!!|||:!!:!!||||||||||||:!! !|||! !!:||| ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 339 : > Target Intron 1 >>>> CysGluLysValGlyGluValValTyrMetThrA : 349 81 bp !.!. |||||| !..! !! !! !..!| ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 350 : snTrpTyrTyrLeuProTyrLysAspIleLeuAsnLeuIleGlnIleIleLeuArgSe : 368 |||||||| !|||||| !!!:! !! ! !::!:!!|||! !|||||| !! !|| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 369 : rSerMetMetIleLysIleThrAlaGlyLysLeuValHisMetSerIlePheThrPhe : 387 |!:! ||||||:!!||||||||||||:!! !!.!.||||||:!! !!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 388 : GlyAsn >>>> Target Intron 2 >>>> ValIleLysThrAlaCysAlaTy : 397 !:!! 1161 bp |||!!:|||..!||| !.!|| ThrAsp++ ++ValMetLysValAlaMetGlyTy 206391 : ACCGATgt.........................agGTAATGAAGGTGGCGATGGGATA : 207581 398 : rPheAsnLeuLeuArgGln : 403 |||||||:!!||||||:!! rPheAsnIleLeuArgGlu 207582 : CTTCAACATACTCCGTGAA : 207601 vulgar: gi|350422514|ref|XP_003493187.1| 300 403 . KQ414889.1 206050 207601 + 184 M 37 111 5 0 2 I 0 77 3 0 2 M 52 156 5 0 2 I 0 1157 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 207601 184 + . gene_id 30 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206398 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206398 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206399 206400 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206399 207559 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 207558 207559 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 207560 207601 . + . KQ414889.1 exonerate:protein2genome:local exon 207560 207601 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 207601 184 + . alignment_id 30 ; Query gi|350422514|ref|XP_003493187.1| ; Align 206051 301 111 ; Align 206243 338 156 ; Align 207560 390 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 266 -> 340 Target range: 263671 -> 264657 267 : SerPheIleAlaGlyIleGluAspValMetAsnGluIleCysPheMetGluLeuPheL : 286 |||||||||! ! !!|||:!!:!!||||||!:! !|||||||||:!!|||||||||| SerPheIleAspArgIleLysAsnValMetSerThrIleCysPheValGluLeuPheL 263672 : AGTTTCATAGATCGTATTAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCA : 263729 287 : ysCysThrMetAsnMetCys{Me} >>>> Target Intron 1 >>>> {t}Il : 294 ||..!|||:!!:!!!!:|||{!!} 764 bp {:}|| ysAlaThrLeuAspIleCys{Il}+- +-{e}Il 263730 : AGGCTACGCTGGATATATGC{AT}gc.........................aa{T}AT : 264517 295 : eGlyTyrTyrIleLeuThrGluTrpLysGluHisAspIleGlnTyrMetProAlaTyr : 313 | ! ! !!:!!!!! !||||||:!!...|||||||||||| ::: !.!!||| eThrIleAspValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyr 264518 : AACAATTGACGTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATAT : 264574 314 : LeuIleIleLeuPheSerMetThrPheAsnIlePheValValCysTyrIleGlyGluT : 333 !!!!!:||||||.!.|||||| ! !|||||||||:!!:!!|||||||||||||||! PheMetIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluI 264575 : TTCATGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGA : 264634 334 : hrLeuLysGluGlnCysGluLys : 340 !|||! |||||| ||| leLeuThrGluGlnValIleLys 264635 : TATTGACTGAGcaggtaattaaa : 264657 vulgar: gi|350422514|ref|XP_003493187.1| 266 340 . KQ414889.1 263671 264657 + 160 M 26 78 S 0 2 5 0 2 I 0 760 3 0 2 S 1 1 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 263672 264657 160 + . gene_id 31 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 263672 263751 . + . KQ414889.1 exonerate:protein2genome:local exon 263672 263751 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263752 263753 . + . intron_id 1 ; splice_site "GC" KQ414889.1 exonerate:protein2genome:local intron 263752 264515 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264514 264515 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 264516 264657 . + . KQ414889.1 exonerate:protein2genome:local exon 264516 264657 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 263672 264657 160 + . alignment_id 31 ; Query gi|350422514|ref|XP_003493187.1| ; Align 263672 267 78 ; Align 264517 294 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 300 -> 337 Target range: 277371 -> 277482 301 : GluTrpLysGluHisAspIleGlnTyrMetProAlaTyrLeuIleIleLeuPheSerM : 320 ||||||...!!: !|||:!!||| ||| !!.!!:!!!!!!!:||||||.!.|||| GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 321 : etThrPheAsnIlePheValValCysTyrIleGlyGluThrLeuLysGluGln : 337 || ||||||||||||..!||||||||||||||||||! !|||! |||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAG : 277482 vulgar: gi|350422514|ref|XP_003493187.1| 300 337 . KQ414889.1 277371 277482 + 121 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277482 121 + . gene_id 32 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277482 121 + . alignment_id 32 ; Query gi|350422514|ref|XP_003493187.1| ; Align 277372 301 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 337 -> 390 Target range: 219512 -> 219671 338 : CysGluLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProTyrLysA : 357 |||...|||:::||||||::: !||||||! !.!.|||||| ||| !! ||| CysArgLysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysL 219513 : TGtaggaaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGA : 219570 358 : spIleLeuAsnLeuIleGlnIleIleLeuArgSerSerMetMetIleLysIleThrAl : 376 ! ! ||| !:!! !! !||| !! !|||!:! !||||||:!:||||| ysLysLeuTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAl 219571 : AAAAGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGC : 219627 377 : aGlyLysLeuValHisMetSerIlePheThrPheGlyAsnVal : 390 ||||!!.:!!|||.!.:!!|||||| !|||||| !:!!||| aGlyAsnMetValGluLeuSerIleSerThrPheThrAspVal 219628 : CGGAAATATGGTCGAATTGTCTATCAGCACTTTTACCGACGTG : 219671 vulgar: gi|350422514|ref|XP_003493187.1| 337 390 . KQ414889.1 219512 219671 + 112 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219513 219671 112 + . gene_id 33 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219513 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219513 219671 112 + . alignment_id 33 ; Query gi|350422514|ref|XP_003493187.1| ; Align 219513 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 335 -> 405 Target range: 196645 -> 198627 336 : GluGlnCysGluLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProT : 355 |||:!! !!|||!:!|||||||||..! !|||.!.! ! |||||| !!|||||| GluLysSerGluArgValGlyGluThrSerTyrPheMetProTrpTyrAspLeuProA 196646 : GAAAAGAGCGAAAGAGTAGGCGAAACGTCGTACTTCATGCCGTGGTACGATCTTCCGG : 196703 356 : yrLysAspIleLeuAsnLeuIleGlnIleIleLeuArgSerSerMetMetIleLysIl : 374 !! ! ! !|||:!!! ! !||||||||||||:!!||| ! !!..:! spAspLeuAlaLysAsnIleArgThrIleIleLeuArgAlaSerHisProSerSerLe 196704 : ACGATTTAGCCAAGAATATAAGAACGATCATACTAAGAGCCAGTCATCCGTCAAGTTT : 196760 375 : eThrAlaGlyLysLeuValHisMetSerIlePheThrPheGlyAsn >>>> Targe : 390 ::!!!.!!.!|||||| !! !!:!:|||:!! .!!||| !!:!! 1 uSerGlyAlaLysLeuPheAspLeuSerLeuGlnAlaPheCysAsp++ 196761 : GTCTGGCGCCAAGTTGTTCGATCTTTCGCTTCAAGCATTTTGCGACgt.......... : 196810 391 : t Intron 1 >>>> ValIleLysThrAlaCysAlaTyrPheAsnLeuLeuArgGl : 403 772 bp ||| !||||||:!!...||||||||||||...|||::: ++ValCysLysThrSerAlaAlaTyrPheAsnPheLeuGlnAl 196811 : ...............agGTTTGCAAAACTTCTGCGGCctacttcaattttctacaagC : 198619 404 : nAlaThr : 405 ! !||| aMetThr 198620 : AATGACA : 198627 vulgar: gi|350422514|ref|XP_003493187.1| 335 405 . KQ414889.1 196645 198627 + 109 M 54 162 5 0 2 I 0 1768 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 196646 198627 109 + . gene_id 34 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 196646 196807 . + . KQ414889.1 exonerate:protein2genome:local exon 196646 196807 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 196808 196809 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 196808 198579 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 198578 198579 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 198580 198627 . + . KQ414889.1 exonerate:protein2genome:local exon 198580 198627 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 196646 198627 109 + . alignment_id 34 ; Query gi|350422514|ref|XP_003493187.1| ; Align 196646 336 162 ; Align 198580 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 300 -> 337 Target range: 283096 -> 283207 301 : GluTrpLysGluHisAspIleGlnTyrMetProAlaTyrLeuIleIleLeuPheSerM : 320 ||||||...!!: !|||:!!||| !||| !!.!!:!!!!!!!:||||||.!.|||| GluTrpSerAspGlyAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 283097 : GAATGGTCTGACGGCGATGTTCAGACTATGACTACGCATTTCATGATCCTTATATCCA : 283154 321 : etThrPheAsnIlePheValValCysTyrIleGlyGluThrLeuLysGluGln : 337 || ||||||||||||..!|||! !|||||||||:!!! !|||! |||||| etCysPheAsnIlePheThrValTyrTyrIleGlyLysIleLeuThrGluGln 283155 : TgtgtttcaacatttttacAGTATACTATATCGGGAAAATACTAACTGAACAG : 283207 vulgar: gi|350422514|ref|XP_003493187.1| 300 337 . KQ414889.1 283096 283207 + 105 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283097 283207 105 + . gene_id 35 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283097 283207 . + . KQ414889.1 exonerate:protein2genome:local exon 283097 283207 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283097 283207 105 + . alignment_id 35 ; Query gi|350422514|ref|XP_003493187.1| ; Align 283097 301 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1306 Query range: 0 -> 405 Target range: 256601 -> 258735 1 : MetProAsnGluAlaValValIleGluAlaAspSerAsnSerAsnSerAspTyrSerL : 20 ||| !!|||||| !!.!|||:!!:!!.!!:!!! !!!.||| !!||||||||||||| MetThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerL 256602 : ATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTC : 256659 21 : euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerSerProSerTh : 39 |||||||||||||||||||||||||||||||||||||||||||| !!||| !!||||| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 256660 : TCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCAC : 256716 40 : rThrArgLeuGluLysIleIleSerPheLeuLeuAsnThrIleCysTyrSerThrVal : 58 ||||! !||||||::!! !:!!|||.!!:!!||||||! !:!!||||||.!!:!!:!! rThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIle 256717 : TACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATA : 256773 59 : IleIleThrAlaIleProSerLeuLeuGlnMetIleLeuGluAsnGluSerIleAsnS : 78 :!:.!!||| !||||||!!!||||||!!.:!:.!!|||!!::!!!!:|||.!! ! LeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrM 256774 : TTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAca : 256833 79 : erLysLeuLysAsnLeuAspPheLeuSerHisLeuIleValSerIlePheThrTyrSe : 97 |||:::||||||... !:!!||||||! !|||:!!||| ! !!.!|||!! etLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrTh 256834 : tgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACAC : 256890 98 : rValLeuLeuLeuHisAsnLysAspIleArgArgCysValGluHisMetLysAlaAsp : 116 !:!!|||||||||!!....|||||||||||| !||||||||||||!!::!!.!!||| rLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAsp 256891 : GTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGAT : 256947 117 : TrpArgAlaValSerArgLysGluAspGlnHisValMetMetLysAsnAlaLysPheG : 136 |||||| !|||!!!|||:!!:!!||||||!!.||||||||||||||||||!:!|||| TrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheG 256948 : TGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCG : 257007 137 : lyArgTyrValAlaAlaPheCysAlaIlePheValGlnGlySerValLeuCysPheCy : 155 ||||||||||||||.!!||||||||| !.!!:!!|||.!!.!!|||...|||||| lyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePh 257008 : GTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttctt : 257064 156 : sPheValThrAlaLeuAsnThrLeuGluIleGlnIleGlyAsnGluThrArgIleLeu : 174 !:!!|||||||||||| ! !|||!!.:!:||||||||||||! !|||:!! eValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleVal 257065 : cgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTG : 257121 175 : HisValLeuProCysAlaValTyrLysLysLeuValAsnValAspGluSerProThrA : 194 !..||||||||| !.!!|||||||||||||||:!!|||||||||:!!|||||||||| ArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrA 257122 : CGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGA : 257181 195 : snGluPheMetIlePheLeuGlnIleTrpSerThrPheIleAlaAsnCysSerThrVa : 213 |||||.!!:!!:!!|||:!!|||! !||||||:!!.!!||||||!.! !|||||||| snGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrVa 257182 : ACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGT : 257238 214 : lGlyIlePheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGlyGlnLeuAsnVal : 232 |.!!|||||||||||||||||||||!!!|||.!!||||||! !|||||||||!.!||| lSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrVal 257239 : TAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTG : 257295 233 : ValMetLeuTrpIleAlaGluPheValAsnGluAlaThrValLysSerArgThrGlyG : 252 :!!|||! !||||||.!!|||||||||||||||:!!! ! !:::...:::||| LeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheP 257296 : CTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttc : 257355 253 : lyPheThrLysIleGlyIleIleValGluArgHisLeuArgThrLeu{As} >>>> : 268 |||! !:!!||||||:!:|||||||||!.!|||||||||..!|||{!:} roPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Se}++ 257356 : ctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt..... : 257407 269 : Target Intron 1 >>>> {n}PheIleSerTyrIleGluGlyValMetAsnLys : 279 76 bp {!}||||||||||||||||||! !|||||||||::! ++{r}PheIleSerTyrIleGluGluValMetAsnArg 257408 : ....................ag{T}TTCATATCATATATCGAGGAAGTGATGAACCGA : 257512 280 : IleCysPheLeuGluMetLeuArgCysThrMetGluIleCysValIleGlyTyrPheI : 299 |||||||||||||||:!!!!!|||||||||:!!! ||||||:!!:!:||||||!:!| IleCysPheLeuGluLeuPheArgCysThrLeuAlaIleCysMetLeuGlyTyrTyrI 257513 : ATATGTTTTTTAGAGTTGTTTAGATGCACGCTGGCTATATGCATGCTGGGATACTACA : 257572 300 : leValSer >>>> Target Intron 2 >>>> GluTrpAlaGluHisAspVal : 308 ||:!!:!! 684 bp ||||||:!! !!..|||::: leLeuAla++ ++GluTrpSerThrGlnAspIle 257573 : TTCTTGCGgt.........................aggaATGGTCTACGCaagatatt : 258283 309 : ArgAsnLeuAlaSerTyrValMetMetPheIleAlaIleCysTyrAsnIlePheIleL : 328 :::||||||:::|||||| !!|||!!:.!!|||:::::: :::|||||||||:::: GlnAsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValI 258284 : caaaatttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaa : 258343 329 : euCysTyrIleGlyGluLeuLeuThrGluGln >>>> Target Intron 3 >>> : 339 ::|||||||||||||||:!!|||||||||||| 90 bp leCysTyrIleGlyGluIleLeuThrGluGln++ 258344 : tatgttACATAGGTGAAATATTAACAGAACAGgt........................ : 258378 340 : > CysLysLysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProGlyL : 357 |||||||||:!!|||!!:|||||||||||||||:!!|||||||||||||||! !| ++CysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspL 258379 : .agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACA : 258520 358 : ysThrIleLeuAspLeuIleMetValIleAlaArgSerAsnValValValHisIleTh : 376 ||! !|||||||||||||||:!!|||||||||||||||!:!|||||||||!!.||||| ysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleTh 258521 : AAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCAC : 258577 377 : rAlaGlyLysLeuValHisMetSerValTyrThrPheGlySer >>>> Target I : 391 ||||||||||... |||||||||:!!|||||||||.!!..! 69 rAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAsp++ 258578 : CGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATgt............. : 258624 392 : ntron 4 >>>> ValValLysThrGlyPheAlaTyrLeuAsnLeuLeuGlnGlnMe : 405 bp |||:!!||||||..!|||||||||||||||||||||!::|||:! ++ValIleLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnVa 258625 : ............agGTAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGT : 258733 406 : t : 405 : l 258734 : A : 258735 vulgar: gi|350422524|ref|XP_003493190.1| 0 405 . KQ414889.1 256601 258735 + 1306 M 267 801 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256602 258735 1306 + . gene_id 1 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256602 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256602 257404 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258735 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258735 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256602 258735 1306 + . alignment_id 1 ; Query gi|350422524|ref|XP_003493190.1| ; Align 256602 1 801 ; Align 257482 269 99 ; Align 258265 302 111 ; Align 258466 339 156 ; Align 258691 391 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1247 Query range: 0 -> 368 Target range: 259721 -> 262015 1 : MetProAsnGluAlaValValIleGluAlaAspSerAsnSerAsnSerAspTyrSerL : 20 ||| !!|||:!!:!!||| !!:!!|||.!!..!! !!.!|||:!!||||||||||||| MetThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerL 259722 : ATGACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCC : 259779 21 : euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerSerProSerTh : 39 |||||!!!|||||||||||||||||||||||||||||||||||| !!||| !!||||| euGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 259780 : TCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCAC : 259836 40 : rThrArgLeuGluLysIleIleSerPheLeuLeuAsnThrIleCysTyrSerThrVal : 58 ||||||||||||||||||||||||| !!:!!|||! ! !|||||||||||||||:!! rThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIle 259837 : GACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATA : 259893 59 : IleIleThrAlaIleProSerLeuLeuGlnMetIleLeuGluAsnGluSerIleAsnS : 78 :!::!!||| !||||||!!!:!!|||!!.|||:!!||||||!!.||||||:!: !!! LeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrM 259894 : CTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACA : 259953 79 : erLysLeuLysAsnLeuAspPheLeuSerHisLeuIleValSerIlePheThrTyrSe : 97 !||| !||| |||! ! !|||!!!|||! !.!!|||.!! !.!!!.!|||!! etLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrTh 259954 : TGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACAC : 260010 98 : rValLeuLeuLeuHisAsnLysAspIleArgArgCysValGluHisMetLysAlaAsp : 116 !..!|||||||||.....!!:!||||||! !!!!||||||||||||:!!:!! !||| rThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAsp 260011 : AACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGAT : 260067 117 : TrpArgAlaValSerArgLysGluAspGlnHisValMetMetLysAsnAlaLysPheG : 136 |||||| !:!!!!!|||:!!:!!||||||:!!||||||:!!!:! !!|||||||||| TrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheG 260068 : TGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCG : 260127 137 : lyArgTyrValAlaAlaPheCysAlaIlePheValGlnGlySerValLeuCysPheCy : 155 |||||||||||||||||! !|||||| !||||||||||||.!!|||||||||||||| lyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCy 260128 : GCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTG : 260184 156 : sPheValThrAlaLeuAsnThrLeuGluIleGlnIleGlyAsnGluThrArgIleLeu : 174 |!!.||||||!.!|||!:!||| !! !||||||:!:||||||||||||||||||:!! sLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal 260185 : TTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTT : 260241 175 : HisValLeuProCysAlaValTyrLysLysLeuValAsnValAspGluSerProThrA : 194 |||:!!|||||||||||||||||||||:!!|||:!!||||||:!!!!:||||||! !| HisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetA 260242 : CATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGA : 260301 195 : snGluPheMetIlePheLeuGlnIleTrpSerThrPheIleAlaAsnCysSerThrVa : 213 |||||.!!:!::!! !!:!!|||.!! ||| !||||||!.!|||! |||||||| snGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrVa 260302 : ACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGT : 260358 214 : lGlyIlePheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGlyGlnLeuAsnVal : 232 ||||||||||||||||||||||||||||.!!||||||||||||||||||||||||||| lGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnVal 260359 : TGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTG : 260415 233 : ValMetLeuTrpIleAlaGluPheValAsnGluAlaThrValLysSerArgThrGlyG : 252 :!!||| !||||||.!!|||||||||:!!|||:!!! ! !!:!!.!!:!! !!.! LeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaP 260416 : CTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTC : 260475 253 : lyPheThrLysIleGlyIleIleValGluArgHisLeuArgThrLeu{As} >>>> : 268 !|||! !:!!||||||:!:|||||||||!.!|||||||||.!!|||{!.} roPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeu{Th}++ 260476 : CTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC{AC}gt..... : 260527 269 : Target Intron 1 >>>> {n}PheIleSerTyrIleGluGlyValMetAsnLys : 279 257 bp {!}||||||||| !||||||! !|||||||||::! ++{r}PheIleSerArgIleGluAspValMetAsnArg 260528 : ....................ag{C}TTCATATCGCGTATCGAGGATGTGATGAACCGG : 260813 280 : IleCysPheLeuGluMetLeuArgCysThrMetGluIleCysValIleGlyTyrPheI : 299 |||||||||||||||:!!!!!|||||||||:!!!!:||||||:!!:!!||||||!:!| IleCysPheLeuGluLeuPheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrI 260814 : ATATGCTTCCTGGAGTTGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATA : 260873 300 : leValSer >>>> Target Intron 2 >>>> GluTrpAlaGluHisAspVal : 308 ||:!!! ! 852 bp ||||||||||||!!.|||:!! leLeuMet++ ++GluTrpAlaGluGlnAspIle 260874 : TTCTTATGgt.........................agGAATGGGCTGAGCAAGATATA : 261752 309 : ArgAsnLeuAlaSerTyrValMetMetPheIleAlaIleCysTyrAsnIlePheIleL : 328 !:!||||||:!!!!!||| !!||||||.!.||||||||||||!:!|||:!!||||||: GlnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheIleI 261753 : CAAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAA : 261812 329 : euCysTyrIleGlyGluLeuLeuThrGluGln >>>> Target Intron 3 >>> : 339 !!|||||||||||||||:!!|||||||||||| 81 bp leCysTyrIleGlyGluIleLeuThrGluGln++ 261813 : TCTGTTACATCGGTGAAATACTAACGGAACAGgt........................ : 261847 340 : > CysLysLysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProGlyL : 357 |||..!|||:!!|||!!:|||||||||||||||||||||||||||||||||! !| ++CysSerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuProAspL 261848 : .agTGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACCTGATA : 261980 358 : ysThrIleLeuAspLeuIleMetValIleAlaArg : 368 ||!:!|||||||||||||||:!!:!!||||||||| ysSerIleLeuAspLeuIleLeuIleIleAlaArg 261981 : AAAGTATCCTTGATTTGATTTTGATCATTGCACGA : 262015 vulgar: gi|350422524|ref|XP_003493190.1| 0 368 . KQ414889.1 259721 262015 + 1247 M 267 801 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259722 262015 1247 + . gene_id 2 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259722 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259722 260524 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262015 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262015 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259722 262015 1247 + . alignment_id 2 ; Query gi|350422524|ref|XP_003493190.1| ; Align 259722 1 801 ; Align 260783 269 99 ; Align 261734 302 111 ; Align 261926 339 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 917 Query range: 0 -> 301 Target range: 266586 -> 267558 1 : MetProAsnGluAlaValValIleGluAlaAspSerAsnSerAsnSerAspTyrSerL : 20 ||| !!||||||:!!:!!||||||||||||:!! !|||||| ||||||||||||| MetAlaAsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerL 266587 : ATGGCTAACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCC : 266644 21 : euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerSerProSerTh : 39 |||||||||||||||||||||||||||||||||||||||||||| !!! ! !! !|| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuTh 266645 : TGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCAC : 266701 40 : rThrArgLeuGluLysIleIleSerPheLeuLeuAsnThrIleCysTyrSerThrVal : 58 |:!!!:!||||||::!|||:!!|||!:! !|||! !..!|||||||||!!!:!!:!! rSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIle 266702 : ATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATA : 266758 59 : IleIleThrAlaIleProSerLeuLeuGlnMetIleLeuGluAsnGluSerIleAsnS : 78 :!:.!!|||!.!||||||!!!|||!!!!!.:!::!!||||||:!!|||||||||..!! LeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgT 266759 : CTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTA : 266818 79 : erLysLeuLysAsnLeuAspPheLeuSerHisLeuIleValSerIlePheThrTyrSe : 97 !!|||:!!||| !!!! ! !|||||||||! !.!!|||.!! !.!!!.!|||!! hrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrTh 266819 : CGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACAC : 266875 98 : rValLeuLeuLeuHisAsnLysAspIleArgArgCysValGluHisMetLysAlaAsp : 116 !..!|||||||||!.!!:!|||!!:|||||| !!|||||||||||||||:!!.!!||| rThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAsp 266876 : CACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGAT : 266932 117 : TrpArgAlaValSerArgLysGluAspGlnHisValMetMetLysAsnAlaLysPheG : 136 |||||| !|||!!!||| !||||||:!!!!.||||||:!!|||||||||!:!.!!| TrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleG 266933 : TGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCG : 266992 137 : lyArgTyrValAlaAlaPheCysAlaIlePheValGlnGlySerValLeuCysPheCy : 155 ||||||||:!!||| !||||||||| |||:!!||| !!.!!|||||| !!!:!|| lyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCy 266993 : GTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTG : 267049 156 : sPheValThrAlaLeuAsnThrLeuGluIleGlnIleGlyAsnGluThrArgIleLeu : 174 | ! :!!||||||!!!!.!! !! ! :!::!!:!!||||||||||||||||||:!! sValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleVal 267050 : TGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTA : 267106 175 : HisValLeuProCysAlaValTyrLysLysLeuValAsnValAspGluSerProThrA : 194 |||:!!||||||||||||||||||||||||:!!:!! |||||| |||||||||| HisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrA 267107 : CATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGA : 267166 195 : snGluPheMetIlePheLeuGlnIleTrpSerThrPheIleAlaAsnCysSerThrVa : 213 |||||.!!:!::!! !!! !|||.!! ||| !||||||!.!|||! |||..!|| snGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValVa 267167 : ACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGT : 267223 214 : lGlyIlePheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGlyGlnLeuAsnVal : 232 |||| !||||||||||||||||||!!!||||||||||||||||||||||||!:!||| lGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerVal 267224 : CGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTG : 267280 233 : ValMetLeuTrpIleAlaGluPheValAsnGluAlaThrValLysSerArgThrGlyG : 252 :!!|||:!!|||||| !||||||||||||..!:!!! !! !!..!:!!:!!.!! ! LeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValC 267281 : CTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTT : 267340 253 : lyPheThrLysIleGlyIleIleValGluArgHisLeuArgThrLeu{As} >>>> : 268 !!||| !|||||||||:!::!!||||||!.!|||||||||..!|||{!:} ysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 267341 : GCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG}gt..... : 267392 269 : Target Intron 1 >>>> {n}PheIleSerTyrIleGluGlyValMetAsnLys : 279 69 bp {!}||||||:!! !||||||.!!||||||!:!:!! ++{r}PheIleAlaArgIleGluSerValMetSerGlu 267393 : ....................ag{C}TTCATAGCACGTATCGAAAGTGTAATGAGCGAA : 267490 280 : IleCysPheLeuGluMetLeuArgCysThrMetGluIleCysValIleGlyTyrPheI : 299 |||||||||:!!|||:!!!!!!:!|||||||||!!:|||||||||:!!.!!|||!:!| IleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSerTyrTyrI 267491 : ATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCTATTATA : 267550 300 : leValSer : 301 ||:!!!!! leLeuThr 267551 : TCCTTACG : 267558 vulgar: gi|350422524|ref|XP_003493190.1| 0 301 . KQ414889.1 266586 267558 + 917 M 267 801 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266587 267558 917 + . gene_id 3 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266587 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266587 267389 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267558 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267558 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266587 267558 917 + . alignment_id 3 ; Query gi|350422524|ref|XP_003493190.1| ; Align 266587 1 801 ; Align 267460 269 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 877 Query range: 2 -> 301 Target range: 274338 -> 275309 3 : AsnGluAlaValValIleGluAlaAspSerAsnSerAsnSerAspTyrSerLeuGlnL : 22 ||| |||:!! !:!! |||:!!! !:!!||| !||||||||||||||||||| AsnCysAlaIleAsnValThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnL 274339 : AACTGTGCGATAAACGTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAAT : 274396 23 : euAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerSerProSerThrThrAr : 41 ||||||||||||||||||||||||||||||||||||||! !:!! !! !!||||||!: euAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaSerProThrThrLy 274397 : TGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAA : 274453 42 : gLeuGluLysIleIleSerPheLeuLeuAsnThrIleCysTyrSerThrValIleIle : 60 !!!!|||::!|||:!!||| !|||||| :::||||||!!! !:!!:!! ! sPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSer 274454 : ATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTGCTTCATACTCTCC : 274510 61 : ThrAlaIleProSerLeuLeuGlnMetIleLeuGluAsnGluSerIleAsnSerLysL : 80 |||!.!|||||||||:!!!!!!!.!!:||||||! !:!!||||||:!!:!! !|||| ThrValIleProSerIlePheHisIleIleLeuValAspGluSerLeuHisLeuLysL 274511 : ACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGC : 274570 81 : euLysAsnLeuAspPheLeuSerHisLeuIleValSerIlePheThrTyrSerValLe : 99 ||||| |||! ! !|||.!!|||! !.!!:!!.!! !.!!!.!|||!!!..!|| euLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLe 274571 : TGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCT : 274627 100 : uLeuLeuHisAsnLysAspIleArgArgCysValGluHisMetLysAlaAspTrpArg : 118 |||||||!.!!:!|||!!:|||||| !!|||||||||||||||:!!.!!||||||||| uLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArg 274628 : GTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGG : 274684 119 : AlaValSerArgLysGluAspGlnHisValMetMetLysAsnAlaLysPheGlyArgT : 138 !|||!!!||| !|||||||||!!.||||||:!!||||||||||||.!!||||||| IleValThrArgProGluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgT 274685 : ATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTT : 274744 139 : yrValAlaAlaPheCysAlaIlePheValGlnGlySerValLeuCysPheCysPheVa : 157 |||||||| !||||||||| |||:!!||| !!.!!|||||||||!:!||| ! :! yrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIl 274745 : ACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGAT : 274801 158 : lThrAlaLeuAsnThrLeuGluIleGlnIleGlyAsnGluThrArgIleLeuHisVal : 176 !||||||!!!!.!! !! ! :!!|||:!!|||||||||||||||! !:!!|||:!! eThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrArgThrValHisMet 274802 : AACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATG : 274858 177 : LeuProCysAlaValTyrLysLysLeuValAsnValAspGluSerProThrAsnGluP : 196 ||||||||| !!.!|||||||||:!!||| |||||| !|||||||||||||||. LeuProCysLysAlaTyrLysLysIleValAlaValAspThrSerProThrAsnGluI 274859 : TTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGA : 274918 197 : heMetIlePheLeuGlnIleTrpSerThrPheIleAlaAsnCysSerThrValGlyIl : 215 !!:!::!! !! !|||.!! !||| !||||||!.!|||! |||.!!|||||| leValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerSerAlaValGlyAl 274919 : TCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGC : 274975 216 : ePheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGlyGlnLeuAsnValValMet : 234 !||||||||||||||||||!!!||||||||||||! !|||||||||!:!|||:!!||| aPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMet 274976 : ATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATG : 275032 235 : LeuTrpIleAlaGluPheValAsnGluAlaThrValLysSerArgThrGlyGlyPheT : 254 :!!||||||.!!||||||||||||.!.:!!! !! :::::::::... |||: IleTrpIleThrGluPheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheS 275033 : ATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttca : 275092 255 : hrLysIleGlyIleIleValGluArgHisLeuArgThrLeu{As} >>>> Target : 268 :!:!!||||||:!::!!||||||!.!|||||||||..!|||{!:} 7 erGluIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 275093 : gCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTC{AG}gt........... : 275138 269 : Intron 1 >>>> {n}PheIleSerTyrIleGluGlyValMetAsnLysIleCys : 281 4 bp {!}||||||:!! !||||||! !|||||||||::!|||||| ++{r}PheIleAlaArgIleGluAspValMetAsnArgIleCys 275139 : ..............ag{T}TTCATAGCACGTATCGAGGATGTGATGAATCGAATATGC : 275247 282 : PheLeuGluMetLeuArgCysThrMetGluIleCysValIleGlyTyrPheIleValS : 301 |||:!!|||:!!!!!!:!||||||:!!!!:!!:|||:!!:!!||||||!:!|||:!!! PheMetGluLeuPheLysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleLeuT 275248 : TTCATGGAATTGTTCAAGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTCTCA : 275307 302 : er : 301 !! hr 275308 : CG : 275309 vulgar: gi|350422524|ref|XP_003493190.1| 2 301 . KQ414889.1 274338 275309 + 877 M 265 795 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274339 275309 877 + . gene_id 4 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274339 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274339 275135 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275309 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275309 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274339 275309 877 + . alignment_id 4 ; Query gi|350422524|ref|XP_003493190.1| ; Align 274339 3 795 ; Align 275211 269 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 742 Query range: 12 -> 267 Target range: 262834 -> 263599 13 : AsnSerAsnSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyA : 32 ..!||| !||||||||||||||||||:!!|||||||||.!.|||||||||||||||| GlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyA 262835 : GGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTG : 262892 33 : laTrpProSerSerProSerThrThrArgLeuGluLysIleIleSerPheLeuLeuAs : 51 |||||||| !||| !!|||! !:!!|||:!!|||::!||||||!!!|||||||||! laTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIl 262893 : CATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAAT : 262949 52 : nThrIleCysTyrSerThrValIleIleThrAlaIleProSerLeuLeuGlnMetIle : 70 !..!:!!||||||!!! !:!!:!! !|||!.!|||||||||:!!|||!!.!!::!! eValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeuHisIleVal 262950 : CGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTC : 263006 71 : LeuGluAsnGluSerIleAsnSerLysLeuLysAsnLeuAspPheLeuSerHisLeuI : 90 |||||| !|||!:!.!!:!!! !||||||:!! !|||! ! |||.!!!!.! !. LeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpP 263007 : CTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGT : 263066 91 : leValSerIlePheThrTyrSerValLeuLeuLeuHisAsnLysAspIleArgArgCy : 109 !!|||.!!!!:.!!!.!|||!!! !||||||||||||!:!|||||||||!:! !!|| heValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCy 263067 : TCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTG : 263123 110 : sValGluHisMetLysAlaAspTrpArgAlaValSerArgLysGluAspGlnHisVal : 128 ||||:!!|||:!!:!!! !|||||| !! !|||!!!||| !|||||||||!.!:!! sValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIle 263124 : CGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATC : 263180 129 : MetMetLysAsnAlaLysPheGlyArgTyrValAlaAlaPheCysAlaIlePheValG : 148 |||:!!||||||||||||!:!||||||||||||||||||! !||||||||||||:!!| MetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetG 263181 : ATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGC : 263240 149 : lnGlySerValLeuCysPheCysPheValThrAlaLeuAsnThrLeuGluIleGlnIl : 167 || !|||:!!:!!||| |||.!.|||||||||!!!!.!|||! !! !|||:!! lnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAs 263241 : AAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGA : 263297 168 : eGlyAsnGluThrArgIleLeuHisValLeuProCysAlaValTyrLysLysLeuVal : 186 !|||||||||||||||||||||!.!:!!||||||||| !!|||||||||:!!:!!:!! pGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLysGluIleIle 263298 : CGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATT : 263354 187 : AsnValAspGluSerProThrAsnGluPheMetIlePheLeuGlnIleTrpSerThrP : 206 |||||| !!:!||||||||||||.!!.!.:!! ! !|||.!! !||| !| ProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyP 263355 : CCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTT : 263414 207 : heIleAlaAsnCysSerThrValGlyIlePheSerLeuAlaAlaValLeuAlaAlaHi : 225 |||||!.!!.!...!!!||||||||| !|||.!!:!!.!!||||||!!!|||!.!|| heIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHi 263415 : TCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCA : 263471 226 : sAlaCysGlyGlnLeuAsnValValMetLeuTrpIleAlaGluPheValAsnGluAla : 244 ||||||||||||||||||||||:!!|||! !||||||.!!||||||||||||:!!:!! sAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSer 263472 : TGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCC : 263528 245 : ThrValLysSerArgThrGlyGlyPheThrLysIleGlyIleIleValGluArgHisL : 264 ! !! !:!!!:!!:!!.! ! !||||||:!!||||||:!:|||||||||!.!|||| ArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisL 263529 : AGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATC : 263588 265 : euArgThrLeu : 267 |||||..!||| euArgValLeu 263589 : TGAGAGTTCTG : 263599 vulgar: gi|350422524|ref|XP_003493190.1| 12 267 . KQ414889.1 262834 263599 + 742 M 255 765 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262835 263599 742 + . gene_id 5 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262835 263599 . + . KQ414889.1 exonerate:protein2genome:local exon 262835 263599 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262835 263599 742 + . alignment_id 5 ; Query gi|350422524|ref|XP_003493190.1| ; Align 262835 13 765 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 725 Query range: 10 -> 391 Target range: 232438 -> 235147 11 : AspSerAsnSerAsnSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI : 30 :!!:!!!.. !!:!!! !!!:||||||:!!|||:!!|||||||||||||||! !|||! AsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProM 232439 : AACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGA : 232496 31 : leGlyAlaTrpProSerSerProSerThrThrArgLeuGluLysIleIleSerPheLe : 49 !:|||||||||||| !! ! !!..!|||:!!||| !:!!:!!:!!:!!:!! || etGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLe 232497 : TGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACT : 232553 50 : uLeuAsnThrIleCysTyrSerThrValIleIleThrAlaIleProSerLeuLeuGln : 68 ||||!.. !! !|||:!!||| !:!!||| !:!! !:!!|||!!!:!!||| uLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPhe 232554 : GTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTC : 232610 69 : MetIleLeuGluAsnGluSerIleAsnSerLysLeuLysAsnLeuAspPheLeuSerH : 88 !!::!:!!!|||:!! !|||:!!.!...!!:!:!!|||::!:!!! ! !:!!|||| IleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerH 232611 : ATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTC : 232670 89 : isLeuIleValSerIlePheThrTyrSerValLeuLeuLeuHisAsnLysAspIleAr : 107 ||!!!:!::!!.!! !!!.!.!|||!!! !|||||| ! ! !!.||||||! isPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLe 232671 : ACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCT : 232727 108 : gArgCysValGluHisMetLysAlaAspTrpArgAlaValSerArgLysGluAspGln : 126 ! !|||||||||!!.:!!||| !||||||||| !|||!.!!:! ! !!!:: uTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArg 232728 : CTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGT : 232784 127 : HisValMetMetLysAsnAlaLysPheGlyArgTyrValAlaAlaPheCysAlaIleP : 146 !!:!!|||:!!||||||||||||.!!||||||! :!!|||..!.!!..!|||.!!! AspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheC 232785 : GATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTT : 232844 147 : heValGlnGlySerValLeuCysPheCysPheValThrAlaLeuAsnThrLeuGluIl : 165 !:!!!!. !.!!||| !! ! ! .!.||||||!.!|||..!! ! ! !.! ysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPh 232845 : GCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTT : 232901 166 : eGlnIleGlyAsnGluThrArgIleLeuHisValLeuProCysAlaValTyrLysLys : 184 ! ! :!:|||||||||!:! ! :!!:!! !|||||||||.!! !!|||! !||| eTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLys 232902 : CTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAG : 232958 185 : LeuValAsnValAspGluSerProThrAsnGluPheMetIlePheLeuGlnIleTrpS : 204 |||:!!:!!..! |||||||||||||||.!.|||.!! !!|||||| ! | LeuMetAspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuS 232959 : CTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCT : 233018 205 : erThrPheIleAlaAsnCysSerThrValGlyIlePheSerLeuAlaAlaValLeuAl : 223 || !||||||!.!|||! ! !||||||||| !! !.!!|||!.!||||||||||| erGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAl 233019 : CCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGC : 233075 224 : aAlaHisAlaCysGlyGlnLeuAsnValValMetLeuTrpIleAlaGluPheValAsn : 242 | !||||||||||||||||||||||||||||||! ! :!:! !!!:!!.|||:!! aMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAsp 233076 : GATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGAC : 233132 243 : GluAlaThrValLysSerArgThrGlyGlyPheThrLysIleGlyIleIleValGluA : 262 ! ! ! ! !:!!..!|||..!!.! ! ! !|||:!!|||.!!|||||||||! AlaLysGlyGlnGluGluArgValAlaGln---ArgLysLeuGlyPheIleValGluH 233133 : GCGAAAGGGCAGGAGGAGAGAGTCGCGCAG---AGGAAGTTAGGTTTCATCGTGGAGC : 233189 263 : rgHisLeuArgThrLeuAsnPheIleSer >>>> Target Intron 1 >>>> : 272 .!|||||||||||||||!..!:!:!:||| 1493 bp isHisLeuArgThrLeuArgTyrLeuSer++ ++ 233190 : ATCATTTGCGTACATTAAGGTATTTGTCTgt.........................ag : 234710 273 : TyrIleGluGlyValMetAsnLysIleCysPheLeuGluMetLeuArgCysThrMetG : 291 ! |||..! !:!!! !||||||:!! ! :!!! |||::: ::: . LeuIleSerMetLeuThrAsnLysValHisGlyIleGlyThrLeuLysPheSerSerA 234711 : TTAATATCAATGTTAACGAACAAAGTACATGGGATCGGtacactgaaattttcatcga : 234769 292 : luIleCysValIleGlyTyrPhe--IleValSerGluTrpAlaGluHisAspValArg : 309 ..... !|||! ! !||| ## !:!!! ! ! !||| ! ... ... snPheArgValThrLeuTyrAla##CysIleLeuThrSerGlnGluLysSerLysGlu 234770 : attttcgCGTAACTCTTTATGCAAATGTATTTTAACTTCTCAGGAAAAgtcgaaggaa : 234825 310 : AsnLeuAlaSerTyrValMetMetPheIleAlaIleCysTyrAsnIlePheIleLeuC : 329 ...|||||||||||||||!!::!!!:!:!::!!!!: !::||||||||||||...| LysLeuAlaSerTyrValIleValTyrValSerMetThrPheAsnIlePheIlePheC 234826 : aaattagCTTCATACGTCATCGTGTACGTGTCCATGACATTtaatatattcatatttt : 234885 330 : ysTyrIleGlyGluLeuLeuThrGluGln >>>> Target Intron 2 >>>> : 339 |||||||||||||| !|||||||||||| 74 bp ysTyrIleGlyGluThrLeuThrGluGln++ ++ 234886 : gttACATCGGAGAGACGCTTACAGAGCAGgt.........................ag : 234987 340 : CysLysLysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProGlyLysT : 358 |||! |||:!!|||||| !||||||||||||.!.|||||| |||||| !|||| CysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProHisLysT 234988 : TGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATAAAA : 235046 359 : hrIleLeuAspLeuIleMetValIleAlaArgSerAsnValValValHisIleThrAl : 377 || !|||! !|||:!!|||:!!|||:!!||||||!:!:!!|||:!! ! |||||||| hrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAl 235047 : CTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCACCGC : 235103 378 : aGlyLysLeuValHisMetSerValTyrThrPheGlySerVal : 391 |||||||!!!:!!!!.||||||||| |||||||||..!||| aGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235104 : TGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: gi|350422524|ref|XP_003493190.1| 10 391 . KQ414889.1 232438 235147 + 725 M 242 726 G 1 0 M 18 54 5 0 2 I 0 1489 3 0 2 M 27 81 F 0 2 M 40 120 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232439 235147 725 + . gene_id 6 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232439 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232439 233218 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233219 233220 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233219 234711 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234710 234711 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234712 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234712 234914 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232439 235147 725 + . alignment_id 6 ; Query gi|350422524|ref|XP_003493190.1| ; Align 232439 11 726 ; Align 233165 254 54 ; Align 234712 272 81 ; Align 234795 299 120 ; Align 234989 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 607 Query range: 8 -> 391 Target range: 217147 -> 219671 9 : GluAlaAspSerAsnSerAsnSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuL : 28 !!: !!!: ......||| ::: |||:!!|||! !|||||||||!!.|||| AspTyrGluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuL 217148 : GACTACGAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGA : 217205 29 : ysProIleGlyAlaTrpProSerSerProSerThrThrArgLeuGluLysIleIleSe : 47 |||||!!:||| !||||||!:!|||! !!!!|||||||||! !..!||||||:!!! ysProMetGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTy 217206 : AACCGATGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTA : 217262 48 : rPheLeuLeuAsnThrIleCysTyrSerThrValIleIleThrAlaIleProSerLeu : 66 ! |||:!!|||.!!:!!||||||.!! !:!!! !.!! ! !:!!|||!!!! ! rLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSer 217263 : CAAACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCC : 217319 67 : LeuGlnMetIleLeuGluAsnGluSerIleAsnSerLysLeuLysAsnLeuAspPheL : 86 :!! ! :!!.!!|||||| !|||..!:!! !!..!||||||||| !!!! ! | MetTyrValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProL 217320 : ATGTACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGT : 217379 87 : euSerHisLeuIleValSerIlePheThrTyrSerValLeuLeuLeuHisAsnLysAs : 105 ||! ! !! !:!::!!:!!.!! !!! !|||! ! !|||:!!:!!|||!!. !|| euIlePheCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAs 217380 : TGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGA : 217436 106 : pIleArgArgCysValGluHisMetLysAlaAspTrpArgAlaValSerArgLysGlu : 124 |||||||..!||||||..!...!!::!! !||||||||| !|||!!! !!:!!:!! pIleArgGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLys 217437 : CATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAA : 217493 125 : AspGlnHisValMetMetLysAsnAlaLysPheGlyArgTyrValAlaAlaPheCysA : 144 |||::!.!.!.!|||!!: !||||||!!.||||||||| ! :!!!.! !.!!|||. AspArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysT 217494 : GACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTA : 217553 145 : laIlePheValGlnGlySerValLeuCysPheCysPheValThrAlaLeuAsnThrLe : 163 !!.!!|||:!! ! .!!... ::: ::: ..!!.!! ! !!:!!!:!..! hrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGl 217554 : CCTTCTTCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGG : 217610 164 : uGluIleGlnIleGlyAsnGluThrArgIleLeuHisValLeuProCysAlaValTyr : 182 !..!|||! ! ! !|||! !!.!! !! !!!! ! !||| !! ! !! !! yArgIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThr 217611 : GAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACG : 217667 183 : LysLysLeuValAsnValAspGluSerProThrAsnGluPheMetIlePheLeuGlnI : 202 ||| ! :!!:!!:!!..! ! ! !!!||||||||||||.!!:!!.!!|||||||||: LysTyrIleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnL 217668 : AAGTATATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAAT : 217727 203 : leTrpSerThrPheIleAlaAsnCysSerThrValGlyIlePheSerLeuAlaAlaVa : 221 !: :!! ! !:!: !:!! ! ! !||| !!.! !! !||||||||||||!. euIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAl 217728 : TGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGC : 217784 222 : lLeuAlaAlaHisAlaCysGlyGlnLeuAsnValValMetLeuTrpIleAlaGluPhe : 240 !!!!|||!.!|||||||||||||||:!!.!.|||:!!||| !|||:!: !.!.!!. aPheAlaValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeu 217785 : TTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTA : 217841 241 : ValAsnGluAlaThrValLysSerArgThrGlyGlyPheThrLysIleGlyIleIleV : 260 :!!:!!! !.!!! !! !||| !|||! !! ! !!:!|||!.!! !|||| IleAspGlyArgAlaAspMetSerAspThrValAsp---GlyArgIleAlaSerIleV 217842 : ATCGACGGTAGAGCGGATATGAGCGATACTGTGGAT---GGTAGAATCGCGAGCATCG : 217898 261 : alGluArgHisLeuArgThrLeuAsnPheIleSerTyrIleGlu{G} >>>> Targ : 275 ||...!:!|||:!!|||! !|||!!.! !:!!!!!!! |||! {!} alSerGlnHisValArgIleLeuLysCysValArg***IleVal{G}++ 217899 : TCAGTCAACACGTTCGGATATTAAAGTGTGTAAGATAGATCGTT{G}gt......... : 217946 276 : et Intron 1 >>>> {ly}<->ValMetAsnLysIleCysPheLeuGluMetLeu : 286 1226 bp { !} ..!:!:.!.:!!|||! !||| !|||.!.||| ++{lu}ArgThrLeuGlnGlnIleSerPheAlaGluPheLeu 217947 : ................ag{AG}AGAACCCTCCAGCAAATCTCTTTCGCTGAATTTCTA : 219205 287 : ArgCysThrMetGluIleCysValIleGlyTyrPheIleValSer >>>> Target : 302 !!|||||||||!!:||||||:!!:!!||||||!:!|||:!! ! 7 GlyCysThrMetAspIleCysLeuValGlyTyrTyrIleIleVal++ 219206 : GGATGCACCATGGACATATGTCTCGTTGGATATTACATTATCGTGgt........... : 219255 303 : Intron 2 >>>> GluTrpAlaGluHisAspValArgAsnLeuAlaSerTyrVal : 315 6 bp |||||| !..!:!!||||||! !!:! !!.!!!!|||:!! ++GluTrpLysSerAsnAspValThrSerAlaValThrTyrIle 219256 : ..............agGAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATC : 219368 316 : MetMetPheIleAlaIleCysTyrAsnIlePheIleLeuCysTyrIleGlyGluLeuL : 335 !!::!:.!!|||:!!:!: :::||||||||||||...|||||||||||||||:!!: IleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleV 219369 : ATTCTACTTATATCCCTcactttcaacattttcatattttgctaCATAGGAGAGATCG : 219428 336 : euThrGluGln >>>> Target Intron 3 >>>> CysLysLysIleGlyGlu : 344 !!.!!|||||| 73 bp |||:::|||||||||||| alAlaGluGln++ ++CysArgLysIleGlyGlu 219429 : TTGCTGAACAggt.........................agTGtaggaaaattggagaa : 219528 345 : ValValTyrMetThrAsnTrpTyrTyrLeuProGlyLysThrIleLeuAspLeuIleM : 364 ::: !||||||! !.!.|||||| ||| !!||||||! !! ||| !:!!: MetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValL 219529 : atgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTT : 219588 365 : etValIleAlaArgSerAsnValValValHisIleThrAlaGlyLysLeuValHisMe : 383 !!..!||||||! !|||||| ! !:!! ! :!:|||||||||!!.:!!|||.!.:! euThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLe 219589 : TGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATT : 219645 384 : tSerValTyrThrPheGlySerVal : 391 !|||:!! !|||||| !..!||| uSerIleSerThrPheThrAspVal 219646 : GTCTATCAGCACTTTTACCGACGTG : 219671 vulgar: gi|350422524|ref|XP_003493190.1| 8 391 . KQ414889.1 217147 219671 + 607 M 244 732 G 1 0 M 21 63 S 0 1 5 0 2 I 0 1222 3 0 2 S 1 2 G 0 3 M 26 78 5 0 2 I 0 72 3 0 2 M 37 111 5 0 2 I 0 69 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217148 219671 607 + . gene_id 7 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217148 217943 . + . KQ414889.1 exonerate:protein2genome:local exon 217148 217943 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 217944 217945 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217944 219169 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219168 219169 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219170 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219170 219252 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217148 219671 607 + . alignment_id 7 ; Query gi|350422524|ref|XP_003493190.1| ; Align 217148 9 732 ; Align 217880 254 63 ; Align 219175 276 78 ; Align 219329 302 111 ; Align 219513 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 580 Query range: 2 -> 283 Target range: 236807 -> 237644 3 : AsnGluAlaValValIleGluAlaAspSerAsnSerAsnSerAspTyrSerLeuGlnL : 22 :!!:!!.!!||||||! !||| !:!!! !!.!:!!!:!||||||||||||||||||! AspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnT 236808 : GACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGT : 236865 23 : euAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerSerProSerThrThrAr : 41 !||||||||| :!!||| !||||||.!!||||||..!! ! !!||| !. rpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSer------As 236866 : GGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCG------AA : 236916 42 : gLeuGluLysIleIleSerPheLeuLeuAsnThrIleCysTyrSerThrValIleIle : 60 !||||||!:!! !|||||| :!!||||||..!|||||||||!!!.!!:!!:!!.!! nLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPhe 236917 : CCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTC : 236973 61 : ThrAlaIleProSerLeuLeuGlnMetIleLeuGluAsnGluSerIleAsnSerLysL : 80 :!! !||||||!!!! !|||!!.:!:!!:||||||!!.! !!!!.!! !!!!!|||: SerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysV 236974 : TCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAG : 237033 81 : euLysAsnLeuAspPheLeuSerHisLeuIleValSerIlePheThrTyrSerValLe : 99 !!|||! |||! !! |||||||||! !:!: !!!!!|||.!!!:!|||!!!:!!|| alLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLe 237034 : TGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCT : 237090 100 : uLeuLeuHisAsnLysAspIleArgArgCysValGluHisMetLysAlaAspTrpArg : 118 |||||||!....!||| !||||||!.!! ! !!.!.||||||:!!.!!||||||||| uLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArg 237091 : GTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGA : 237147 119 : AlaValSerArgLysGluAspGlnHisValMetMetLysAsnAlaLysPheGlyArgT : 138 .!!..!:::||||||||| :::...||||||:!!||| !!|||||||||.!!|||| ThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgT 237148 : ACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGAT : 237207 139 : yrValAlaAlaPheCysAlaIlePheValGlnGlySerValLeuCysPheCysPheVa : 157 ||!.!||| !! !|||.!!||||||:!!!!.|||.!!:!!||| ! !:!||| !!:! yrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMe 237208 : ACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTAT : 237264 158 : lThrAlaLeuAsnThrLeuGluIleGlnIleGlyAsnGluThrArgIleLeuHisVal : 176 !||||||! !!.!|||:!!! :!! !:!!||||||:!!|||! !||||||!.!||| tThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLeuArgVal 237265 : GACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGCGTG : 237321 177 : LeuProCysAlaValTyrLysLysLeuValAsnValAspGluSerProThrAsnGluP : 196 ||||||! !!:!!|||||| !|||:!! |||||| !!:! !!! !|||!!:. LeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnAspI 237322 : CTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGACA : 237381 197 : heMetIlePheLeuGlnIleTrpSerThrPheIleAlaAsnCysSerThrValGlyIl : 215 !!:!::!!!!.! !|||.!! ||| !|||||||||||| !|||.!!:!!.!!:! leValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSerVa 237382 : TCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAGTGT : 237438 216 : ePheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGlyGlnLeuAsnValValMet : 234 !.!.||||||.!!::!!.!|||.!!:!!||||||! !|||||||||!:!||||||||| lIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValValMet 237439 : TATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTTATG : 237495 235 : LeuTrpIleAlaGluPheValAsnGluAlaThrValLysSerArgThrGlyGlyPheT : 254 |||! !|||! !!!:||||||!:!||||||! ! !!:!.!!!:! !! ! !||| LeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAspHisPheA 237496 : TTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATCATTTCG : 237555 255 : hrLysIleGlyIleIleValGluArgHisLeuArgThrLeuAsnPheIleSerTyrIl : 273 !:!!||| !! !|||||||||..!|||||||||..!|||!!.! :!!!!!! :! spGluIleProThrIleValGluGluHisLeuArgValLeuLys***ValCysLeuLe 237556 : ACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAGTATGTTTGTT : 237612 274 : eGluGlyValMetAsnLysIleCysPheLeu : 283 :!!: !:!!:!! ! ! ! |||||| uAspLeuIleLeuLeuMetGlyValPheLeu 237613 : GGATTTGATTTTGCTGATGGGTGTGTTTCTC : 237644 vulgar: gi|350422524|ref|XP_003493190.1| 2 283 . KQ414889.1 236807 237644 + 580 M 36 108 G 2 0 M 243 729 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236808 237644 580 + . gene_id 8 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236808 237644 . + . KQ414889.1 exonerate:protein2genome:local exon 236808 237644 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236808 237644 580 + . alignment_id 8 ; Query gi|350422524|ref|XP_003493190.1| ; Align 236808 3 108 ; Align 236916 41 729 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 526 Query range: 4 -> 400 Target range: 226891 -> 230433 5 : AlaValValIleGluAlaAspSerAsnSerAsnSerAspTyrSerLeuGlnLeuAsnA : 24 :!!:!!!.!! !||| !|||! !.!...! !!! !:!! |||:!!|||||||||| SerLeuAlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnA 226892 : TCTCTCGCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATC : 226949 25 : rgTrpPheLeuLysProIleGlyAlaTrpProSerSerProSerThrThrArgLeuGl : 43 |||||.!.|||||||||:!!||| !||||||||||||! !!.!!:!:!!|||:!!! rgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGl 226950 : GTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGG : 227006 44 : uLysIleIleSerPheLeuLeuAsnThrIleCysTyrSerThrValIleIleThrAla : 62 !!:! !.!!|||!::|||:!!..! !:!!||||||:!! !:!!! !.!! ! ! yArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeu 227007 : AAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTG : 227063 63 : IleProSerLeuLeuGlnMetIleLeuGluAsnGluSerIleAsnSerLysLeuLysA : 82 :!! !!||| !||| ! :!!:!!|||||| :!!.!! ! !!!:!! !||||||! ValSerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysM 227064 : GTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAA : 227123 83 : snLeuAspPheLeuSerHisLeuIleValSerIlePheThrTyrSerValLeuLeuLe : 101 :!!! ! :!!||| !!!! :!!|||:!!.!!! !||||||:!!||| !!! etIleGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPh 227124 : TGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTT : 227180 102 : uHisAsnLysAspIleArgArgCysValGluHisMetLysAlaAspTrpArgAlaVal : 120 !|||.!. ! ||||||! !..!|||||||||!..!!:||| !||||||!:! !:!! eHisGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIle 227181 : CCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATC : 227237 121 : SerArgLysGluAspGlnHisValMetMetLysAsnAlaLysPheGlyArgTyrValA : 140 !!! ! !||||||::!:!!||||||:!!! ! !!||| ! !:!|||||| ! :!! ArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuI 227238 : AGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGA : 227297 141 : laAlaPheCysAlaIlePheValGlnGlySerValLeuCysPheCysPheValThrAl : 159 !.!!.!!|||.!!.!!|||||| ...||| ::: ||| .!!|||..! ! leThrIleCysThrPhePheValPheSerSerPheValPhePheTyrIleValValPr 227298 : TCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACC : 227354 160 : aLeuAsnThrLeuGluIleGlnIleGlyAsnGluThrArgIleLeuHisValLeuPro : 178 !:!!|||.!! !...:!! !! ! !:!!! !!.!!.!! !! ! ! !:!!||| oIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetPro 227355 : TATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCG : 227411 179 : CysAlaValTyrLysLysLeuValAsnValAspGluSerProThrAsnGluPheMetI : 198 ! ! !! !! |||! :!!!.!:!!||| ! ! |||||| !||||||.!!.!.. PheProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIlePheP 227412 : TTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCT : 227471 199 : lePheLeuGlnIleTrpSerThrPheIleAlaAsnCysSerThrValGlyIlePheSe : 217 !!! :!!|||.!! !!! !.!!:!: !:!! !! !||| !!.! !! !|| heSerValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSe 227472 : TTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAG : 227528 218 : rLeuAlaAlaValLeuAlaAlaHisAlaCysGlyGlnLeuAsnValValMetLeuTrp : 236 |:!!||||||:!!||||||!.!|||||||||||||||:!!.!.|||:!!:!!! !||| rMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrp 227529 : TATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGG : 227585 237 : IleAlaGluPheValAsnGluAlaThrValLysSerArgThrGlyGlyPheThrLysI : 256 :!:!.!.!.!!.:!!:!!! !.!!! !! !|||!:!||| !! ! !!:!| LeuGlyHisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAsp---AspArgI 227586 : CTGGGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGAT---GATAGAA : 227642 257 : leGlyIleIleValGluArgHisLeuArgThrLeu{As} >>>> Target Intro : 268 ||!.!! !|||||| !.!|||:!!|||! !|||{||} 477 bp leAlaSerIleValThrHisHisValArgIleLeu{As}++ 227643 : TCGCTAGCATCGTCACTCACCACGTTCGAATATTG{AA}gt................. : 227682 269 : n 1 >>>> {n}PheIleSerTyrIleGluGlyValMetAsnLysIleCysPheLeu : 283 {|} !! ! !||| !! ! |||||| ||| +-{n}GluTyrTyrIleIleThrValArgThrAsnLysLysThrLysLeu 227683 : ........at{C}GAGTATTACATCATAACGGTACGcacgaataaaaaaacaaagtta : 228200 284 : GluMetLeuArgCysThrMetGluIleCysValIleGlyTyrPheIleValSerGluT : 303 !! !|||||| !! ! !||||||:!! !:! !!: !! !|||| ---Thr***ArgCysCysSerGlyIleCysIle------PheThrMetSer***GluT 228201 : ---aCGTAACGATGTTGCAGCGGAATTTGCATT------TTCACGATGTCATAGGAAT : 228251 304 : rpAlaGluHisAspValArgAsnLeuAlaSerTyrValMetMetPheIleAlaIleCy : 322 || ! ! ! !!::!!! ! ! !!.!!!!||| ! !:!:.!!:!!:!!.!! rpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerPheTh 228252 : GGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCTTTAc : 228308 323 : sTyrAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuThrGluGln >>>> Ta : 339 :::||||||||||||...|||||||||||||||:!!:!!.!!|||!!. rPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluHis++ 228309 : cttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACgt....... : 228361 340 : rget Intron 2 >>>> CysLysLysIleGlyGluValValTyrMetThrAsnTr : 351 1889 bp |||!:!|||:!!|||||| ! !||||||! !.!.|| ++CysArgLysValGlyGluLysSerTyrMetIleGluTr 228362 : ..................agTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATG : 230284 352 : pTyrTyrLeuProGlyLysThrIleLeuAspLeuIleMetValIleAlaArgSerAsn : 370 |||| ||| !!|||!!.! !! ||| !! !|||:!!:!!||||||! !|||||| pTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSerAsn 230285 : GTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAAT : 230341 371 : ValValValHisIleThrAlaGlyLysLeuValHisMetSerValTyrThrPheGlyS : 390 ! !..! ! .!!|||||||||!!.:!!|||.!.:!:|||||| !!||||||.!!. CysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnThrPheSerA 230342 : TGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCG : 230401 391 : erValValLysThrGlyPheAlaTyrLeuAsn : 400 .!||| !! ! ! !! !!.!||| !||| spValSerIleIlePheSerValTyrThrAsn 230402 : ACGTAAGTATCATATTCTCTGTTTACACGAAT : 230433 vulgar: gi|350422524|ref|XP_003493190.1| 4 400 . KQ414889.1 226891 230433 + 526 M 248 744 G 1 0 M 14 42 S 0 2 5 0 2 I 0 473 3 0 2 S 1 1 M 15 45 G 1 0 M 10 30 G 2 0 M 42 126 5 0 2 I 0 1885 3 0 2 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226892 230433 526 + . gene_id 9 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226892 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226892 227679 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228156 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228155 228156 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 228157 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228157 228358 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226892 230433 526 + . alignment_id 9 ; Query gi|350422524|ref|XP_003493190.1| ; Align 226892 5 744 ; Align 227636 254 42 ; Align 228158 269 45 ; Align 228203 285 30 ; Align 228233 297 126 ; Align 230248 339 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 480 Query range: 17 -> 401 Target range: 284523 -> 287252 18 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerSerP : 37 ||||||:!!|||:!!|||||||||||||||||||||||||||!.!|||||| !|||! TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 38 : roSerThrThrArgLeuGluLysIleIleSerPheLeuLeuAsnThrIleCysTyrSe : 56 !!!!..!|||! !||||||||||||! !||| ! :!!||| !||| !!! !! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 57 : rThrValIleIleThrAlaIleProSerLeuLeuGlnMetIleLeuGluAsnGlu<-> : 75 ! !:!! !.!! ! !:!!|||!!! !||| ! :!:|||!!:!!. eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 76 : SerIleAsnSerLysLeuLysAsnLeuAspPheLeuSerHisLeuIleValSerIleP : 94 ..!:!!:!!!!!|||:!!|||! :!!! ! !|||||| !! !!!::!!:!! . AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 95 : heThrTyrSerValLeuLeuLeuHisAsnLysAspIleArgArgCysValGluHisMe : 113 !!! !|||! !:!!|||:!!! !!.!..! ! ||| !!!:!||||||:!! !!!! leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 114 : tLysAlaAsp{Tr} >>>> Target Intron 1 >>>> {p}ArgAlaValSer : 121 ::::||||||{||} 1012 bp {|}! !:!! !||| eArgAlaAsp{Tr}++ +-{p}LeuSerHisSer 284813 : TCGTGCGGAC{TG}gt.........................ac{G}CTTTCGCATAGt : 285848 122 : ArgLysGluAspGlnHisValMetMetLysAsnAlaLysPheGlyArgTyrValAlaA : 141 ::::::|||::::::...:::|||! ! ! !:!|||!:!.!!||||||! !:!!||| GlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaI 285849 : caagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGA : 285908 142 : laPheCysAlaIlePheValGlnGlySerValLeuCysPheCysPheValThrAlaLe : 160 !||||||||| !|||:!! ! ..!.!!! !!!!! !!:! ! |||! ! !!|| lePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLe 285909 : TCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTT : 285965 161 : uAsnThrLeuGluIleGlnIleGlyAsnGluThrArgIleLeuHisValLeuProCys : 179 | !|||:!!...! :!!||| ! !!!:!.!..!! !:!!... !! ! !!! ! uCysThrValArgThrGluIle---IleAspAsnGluThrValArgSerGlnAlaPhe 285966 : GTGCACAGTACGCACGGAGATC---ATCGACAACGAGACCGTGAGATCTCAAGCGTTC : 286019 180 : AlaValTyrLysLysLeuValAsnValAspGluSerProThrAsnGluPheMetIleP : 199 !!:!!|||::: |||:!!:!! ! ! ||||||:!! !|||.!!:!! !| ProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnP 286020 : CCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAAT : 286079 200 : heLeuGlnIleTrpSerThrPheIleAlaAsnCysSerThrValGlyIlePheSerLe : 218 ||:!!||| !! !:!!.!!|||:!! ! !!! !||||||||| !! !||||| heMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLe 286080 : TCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTT : 286136 219 : uAlaAlaValLeuAlaAlaHisAlaCysGlyGlnLeuAsnValValMetLeuTrpIle : 237 ||||||||||!!!!.! !|||!.!|||||||||!!!!..:!!:!!:!! ! !:!: uAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeu 286137 : GGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTG : 286193 238 : AlaGluPheValAsnGluAlaThr<->ValLysSerArgThrGlyGlyPheThrLysI : 256 ! !:!!.!!|||:!!! !!.!! ! !|||.!! !!:! ! ! !::!: AspLysLeuValAspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgL 286194 : GATAAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGAC : 286253 257 : leGlyIleIleValGluArgHisLeuArgThrLeu{As} >>>> Target Intro : 268 !:||| !|||:!!|||!.!||||||!:!! !|||{..} 491 bp euGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 286254 : TGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt................. : 286293 269 : n 2 >>>> {n}PheIleSerTyrIleGluGlyValMetAsnLysIleCysPheLeu : 283 {.} |||! !!:!! !!!:||| !! :!! ! :!:|||!:!! ! -+{y}---IleLeuPheThrAspGlyAsnArgAspAspLeuCysTyrTyr 286294 : ........gg{G}---ATATTATTTACTGACGGTAACAGAGACGACTTGTGTTATTAC : 286822 284 : GluMetLeuArgCysThrMetGluIleCysValIleGlyTyrPheIleValSerGluT : 303 .!.! :!!! !...! !!!:! !.!! !:!! !..!! ! :!! !!! !|||| HisThrValMetAlaIleIleAlaPheValMetTyrSerLeuSerValPhe***GluT 286823 : CATACTGTAATGGCAATAATTGCATTCGTCATGTACTCGTTGTCAGTTTTCTAGGAAT : 286882 304 : rpAlaGluHisAspValArgAsnLeuAlaSerTyrValMetMetPheIleAlaIleCy : 322 ||! !:!! !!!:..!! !... ! !!!!||| !! !:!!.!.:!!:!!.!! rpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerPheTh 286883 : GGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCAC : 286939 323 : sTyrAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuThrGluGln >>>> Ta : 339 !:!|||:!!||||||||||||||||||||||||:!!|||:!!|||||| rPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286940 : GTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt....... : 286992 340 : rget Intron 3 >>>> CysLysLysIleGlyGluValValTyrMetThrAsnTr : 351 74 bp ||| !|||:!!||| ! !..!||||||! !:!!|| ++CysLeuLysValGlyLeuSerThrTyrMetIleAspTr 286993 : ..................agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTG : 287100 352 : pTyrTyrLeuProGlyLysThrIleLeuAspLeuIleMetValIleAlaArgSerAsn : 370 |||| !||||||||||||||| !! !! !||||||:!!:!!.!!||| !|||||| pTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsn 287101 : GTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAAT : 287157 371 : ValValValHisIleThrAlaGlyLysLeuValHisMetSerValTyrThrPheGlyS : 390 ! !:!! ! :!!||||||||||||:!!:!! !!:!:|||:!! !!:!||| !!| SerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysS 287158 : TCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCA : 287217 391 : erValValLysThrGlyPheAlaTyrLeuAsnLeu : 401 ||||| !! ! !..!!!.:!!|||! !:!!||| erValSerIleIleAsnLeuSerTyrTyrHisLeu 287218 : GCGTGAGTATCATAAATTTATCCTATTATCATTTG : 287252 vulgar: gi|350422524|ref|XP_003493190.1| 17 401 . KQ414889.1 284523 287252 + 480 M 57 171 G 0 3 M 42 126 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 50 150 G 1 0 M 77 231 G 0 3 M 22 66 S 0 2 5 0 2 I 0 487 3 0 2 S 1 1 G 1 0 M 69 207 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 287252 480 + . gene_id 10 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284524 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286781 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286780 286781 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 286782 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286782 286989 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284524 287252 480 + . alignment_id 10 ; Query gi|350422524|ref|XP_003493190.1| ; Align 284524 18 171 ; Align 284698 75 126 ; Align 285839 118 150 ; Align 285989 169 231 ; Align 286223 246 66 ; Align 286783 270 207 ; Align 287064 339 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 465 Query range: 12 -> 401 Target range: 278561 -> 280465 13 : AsnSerAsnSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyA : 32 |||!!!:!!!!! ||||||:!!|||:!!|||||||||||||||||||||||||||! AsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyV 278562 : AACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCG : 278619 33 : laTrpProSerSerProSerThrThrArgLeuGluLysIleIleSerPheLeuLeuAs : 51 .!|||||| !|||! !!!!..!|||! !||||||||||||! !||| ! :!!||| alTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAl 278620 : TATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGC : 278676 52 : nThrIleCysTyrSerThrValIleIleThrAlaIleProSerLeuLeuGlnMetIle : 70 !||| !!! !! ! !:!! !.!! ! !:!!|||!!! !||| ! :!: aLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrVal 278677 : GTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTG : 278733 71 : LeuGluAsnGlu<->SerIleAsnSerLysLeuLysAsnLeuAspPheLeuSerHisL : 89 |||!!:!!. ..!:!!:!!!!!|||:!!|||! :!!! ! !|||||| !! LeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheC 278734 : CTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCT : 278793 90 : euIleValSerIlePheThrTyrSerValLeuLeuLeuHisAsnLysAspIleArgAr : 108 !! :!!:!!! .!!! !|||! !:!!|||:!!! !!.!..! ! ||| !!!: ysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLy 278794 : GCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAA : 278850 109 : gCysValGluHisMetLysAlaAspTrpArg<-><-><->AlaValSerArgLysGlu : 124 !||||||.!. !!!!::::.!!|||||| ! :!! ! ! ::::::||| sCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGlu 278851 : ATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagag : 278907 125 : AspGlnHisValMetMetLysAsnAlaLysPheGlyArgTyrValAlaAlaPheCysA : 144 ::::::...:::|||! ! ! !:!|||!:!.!!||||||! !:!!||| !||| !!| GluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerA 278908 : gagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCG : 278967 145 : laIlePheValGlnGlySerValLeuCysPheCysPheValThrAlaLeuAsnThrLe : 163 || !|||:!! ! ..!.!!! !:!!! !!:! ! !|||! ! !!||| !.!!:! laGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaVa 278968 : CCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGT : 279024 164 : uGluIleGlnIleGlyAsnGluThrArgIleLeuHisValLeuProCysAlaValTyr : 182 !...! :!!||| ! !!!:!.!..!! :!!... !! ! !!! ! !!:!!||| lArgThrGluIle---IleAspAsnGluThrValArgSerGlnAlaPheProIleTyr 279025 : ACGCACGGAGATC---ATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTAT : 279078 183 : LysLysLeuValAsnValAspGluSerProThrAsnGluPheMetIlePheLeuGlnI : 202 ::: |||:!!:!! ! ! ||||||:!! !|||.!!:!! !|||:!!||| ArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnC 279079 : CGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAAT : 279138 203 : leTrpSerThrPheIleAlaAsnCysSerThrValGlyIlePheSerLeuAlaAlaVa : 221 !! !:!!.!!|||:!! ! !!! !||||||||| !! !|||||| !||||| ysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaVa 279139 : GCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGT : 279195 222 : lLeuAlaAlaHisAlaCysGlyGlnLeuAsnValValMetLeuTrpIleAlaGluPhe : 240 |!!!!.! !|||!.!|||||||||!!!!..:!!:!!:!! ! !:!:! !:!!.!! lPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeu 279196 : GTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTC : 279252 241 : ValAsnGluAlaThr<->ValLysSerArgThrGlyGlyPheThrLysIleGlyIleI : 259 :!!:!!! !!.!! ! !|||||| !!:! ! ! !::!:!:||| !| IleAspGlyValLysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspI 279253 : ATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATA : 279312 260 : leValGluArgHisLeuArg >>>> Target Intron 1 >>>> ThrLeuAsn : 268 ||:!!|||!.!||||||!:! 651 bp ! !||| ! leIleGluHisHisLeuLys-+ +-MetLeuPhe 279313 : TCATCGAGCATCATCTGAAGat.........................atATGCTTTTT : 279990 269 : PheIleSerTyrIleGluGlyValMetAsnLysIleCysPheLeuGluMetLeuArgC : 288 !|||! !!:!! !.!.||| !! :!! ! :!!|||!:!!!!.!.!!::!!! !. AspIleLeuPheThrHisGlyAsnArgAspAspLeuCysTyrPheHisIleValMetA 279991 : GACATATTATTTACTCACGGTAACAGAGACGACTTATGTTATTTCCATATTGTAATGG : 280050 289 : ysThrMetGluIleCysValIleGlyTyrPheIleValSerGluTrpAlaGluHisAs : 307 ..! !!!:! !.!! !:!! !..!! ! :!! !!! !||||||! !:!!:!!|| laLysIleAlaPheValMetTyrSerLeuSerValPhe***GluTrpGluGlnAsnAs 280051 : CAAAAATTGCATTCGTCATGTACTCGTTGTCAGTTTTCTAGGAATGGGAGCAAAATGA : 280107 308 : pValArgAsnLeuAlaSerTyrValMetMetPheIleAlaIleCysTyrAsnIlePhe : 326 |!.!! !... ! !!!!|||:!!|||.!..!!|||:!!:!! !:!|||:!!||| pAlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerLeuThrPheAsnValPhe 280108 : CGCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTC : 280164 327 : IleLeuCysTyrIleGlyGluLeuLeuThrGluGln >>>> Target Intron 2 : 339 |||||||||||||||||||||:!!|||:!!|||||| 74 bp IleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 280165 : ATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt.................... : 280205 340 : >>>> CysLysLysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuPro : 355 ||| !|||:!!|||! ! !..!||||||! !:!!|||||| !|||||| ++CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuPro 280206 : .....agTGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCA : 280325 356 : GlyLysThrIleLeuAspLeuIleMetValIleAlaArgSerAsnValValValHisI : 375 ||||||! ! !! !! !||||||:!!:!!.!!||| !|||||| ! !:!! ! : GlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysL 280326 : GGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAAT : 280385 376 : leThrAlaGlyLysLeuValHisMetSerValTyrThrPheGlySerValValLysTh : 394 !!||||||||||||:!!:!! !!:!:|||:!! !!:!||| !!|||||| !! ! euThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIl 280386 : TAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCAT : 280442 395 : rGlyPheAlaTyrLeuAsnLeu : 401 !..!!!.:!!|||! !:!!||| eAsnLeuSerTyrTyrHisLeu 280443 : AAATTTATCCTATTATCATTTG : 280465 vulgar: gi|350422524|ref|XP_003493190.1| 12 401 . KQ414889.1 278561 280465 + 465 M 62 186 G 0 3 M 44 132 G 0 9 M 49 147 G 1 0 M 77 231 G 0 3 M 20 60 5 0 2 I 0 647 3 0 2 M 73 219 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278562 280465 465 + . gene_id 11 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278562 279332 . + . KQ414889.1 exonerate:protein2genome:local exon 278562 279332 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 279333 279334 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 279333 279983 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279982 279983 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 279984 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 279984 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278562 280465 465 + . alignment_id 11 ; Query gi|350422524|ref|XP_003493190.1| ; Align 278562 13 186 ; Align 278751 75 132 ; Align 278892 119 147 ; Align 279039 169 231 ; Align 279273 246 60 ; Align 279984 266 219 ; Align 280277 339 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 395 Query range: 7 -> 273 Target range: 221348 -> 222143 8 : IleGluAlaAspSerAsnSerAsnSerAspTyrSerLeuGlnLeuAsnArgTrpPheL : 27 :!!||| !|||! !!!.!!!||| ! ! ! |||:!!||||||!:!||||||.!!| ValGluTyrAspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleL 221349 : GTTGAATACGATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCT : 221406 28 : euLysProIleGlyAlaTrpProSerSerProSerThrThrArgLeuGluLysIleIl : 46 ||||||||||||||!.!||||||!:!||| !!!:!! !:!!! !:!!|||!:! !:! euLysProIleGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLe 221407 : TGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCT : 221463 47 : eSerPheLeuLeuAsnThrIleCysTyrSerThrValIleIleThrAlaIleProSer : 65 !! !!::|||:!!|||..!:!!||||||||| !:!!! .!! ! !:!!|||!!! uTyrTrpLeuIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCys 221464 : CTACTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGC : 221520 66 : LeuLeuGlnMetIleLeuGluAsnGluSerIleAsnSerLysLeuLysAsnLeuAspP : 85 !||| ! :!!||||||||| |||..!:!! !!!:!!:!:!!||| |||! ! SerLeuTyrValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyP 221521 : AGCCTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTC : 221580 86 : heLeuSerHisLeuIleValSerIlePheThrTyrSerValLeuLeuLeuHisAsnLy : 104 |||||| !! !:!::!!:!!.!!.!.! !||| !:!!|||:!!|||:!!.!.!! roLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAs 221581 : CGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAA : 221637 105 : sAspIleArgArgCysValGluHisMetLysAlaAspTrpArgAlaValSerArgLys : 123 .|||||||||..!|||:!!|||!.!!!::!! !||||||!:! !:!!!!! !... nAspIleArgGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSer 221638 : CGACATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCC : 221694 124 : GluAspGlnHisValMetMetLysAsnAlaLysPheGlyArgTyrValAlaAlaPheC : 143 :!!|||:!! !!:!!|||!!::!!||||||! ||||||||| :!! ! !.!!| LysAspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleC 221695 : AAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCT : 221754 144 : ysAlaIlePheValGlnGlySerValLeuCysPheCysPheValThrAlaLeuAsnTh : 162 ||.!!.!!|||:!! ! .!!... ::: ::: ...!.!! ! !!!!!!:!.. ysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerVa 221755 : GCACATTTTTCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGT : 221811 163 : rLeuGluIleGlnIleGlyAsnGluThrArgIleLeuHisValLeuProCysAlaVal : 181 ! !:!!|||! !:!! ... ... !:!! !! ! !! !! lGlyLysIleProAlaGlnAspValAsnValThrPheIleProMetValPheProPhe 221812 : GGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTC : 221868 182 : TyrLysLysLeuValAsnValAspGluSerProThrAsnGluPheMetIlePheLeuG : 201 ! !:! :!!|||:!!..! ! ||||||..!||||||.!!:!!.!!! |||| SerArgPheIleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuG 221869 : TCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTC : 221928 202 : lnIleTrpSerThrPheIleAlaAsnCysSerThrValGlyIlePheSerLeuAlaAl : 220 ||||| !:!! ! !:!: !:!! !!! !||| !!.! !! !||||||!.!|| lnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAl 221929 : AAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGC : 221985 221 : aValLeuAlaAlaHisAlaCysGlyGlnLeuAsnValValMetLeuTrpIleAlaGlu : 239 |:!!!!!|||!.!|||||||||||||||:!!.!.|||:!!||| !|||:!: !.!. aMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHis 221986 : TATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACAT : 222042 240 : PheValAsnGluAlaThrValLysSerArgThrGlyGlyPheThrLysIleGlyIleI : 259 !!.:!!||| !.! !!.! ! ! ! !!!.!..!! ! !! !!:!|||!.!! | LeuIleAsn---GlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysI 222043 : TTGATCAAC---GGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGA : 222099 260 : leValGluArgHisLeuArgThrLeuAsnPheIleSerTyrIle : 273 |||||.!.!:!|||:!!|||! !|||.!.!:!:!! !!! !||| leValAsnGlnHisValArgIleLeuGlnTyrValArgCysIle 222100 : TTGTGAATCAACACGTTCGAATATTGCAGTATGTACGTTGTATC : 222143 vulgar: gi|350422524|ref|XP_003493190.1| 7 273 . KQ414889.1 221348 222143 + 395 M 235 705 G 1 0 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221349 222143 395 + . gene_id 12 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221349 222143 . + . KQ414889.1 exonerate:protein2genome:local exon 221349 222143 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221349 222143 395 + . alignment_id 12 ; Query gi|350422524|ref|XP_003493190.1| ; Align 221349 8 705 ; Align 222054 244 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 393 Query range: 16 -> 270 Target range: 212869 -> 213628 17 : AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProSerS : 36 ::: |||::: !! !|||||||||.!!|||||||||! ||| !||||||..!! AsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspL 212870 : aatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACA : 212927 37 : erProSerThrThrArgLeuGluLysIleIleSerPheLeuLeuAsnThrIleCysTy : 55 .! !!! !..!:!!! !:!!||||||! !|||:!! |||:!!||||||:!!||||| ysSerTyrValSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTy 212928 : AGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTA : 212984 56 : rSerThrValIleIleThrAlaIleProSerLeuLeuGlnMetIleLeuGluAsnGlu : 74 |.!! !:!! ! ! !!.!||||||!!! !||| ! :!!.!!|||!!: ||| rGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGlu 212985 : CGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgag : 213041 75 : SerIleAsnSerLysLeuLysAsnLeuAspPheLeuSerHisLeuIleValSerIleP : 94 :::||| ...::::!!:!! !!!! !.!!!!!:!! !! !:!:!.!:!!:!:! AsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuT 213042 : aatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGT : 213101 95 : heThrTyrSerValLeuLeuLeuHisAsnLysAspIleArgArgCysValGluHisMe : 113 ::! !||| ! !|||:!!||||||..! ! |||||||||! !|||||||||||||| rpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMe 213102 : GGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATAT : 213158 114 : tLysAlaAspTrpArgAlaValSerArgLysGluAspGlnHisValMetMetLysAsn : 132 |||| !||||||!:! !:!!!!!!.!:!!||||||:!!.!.:!!||| ! !||| tLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsn 213159 : GAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAAC : 213215 133 : AlaLysPheGlyArgTyrValAlaAlaPheCysAlaIlePheValGlnGlySerValL : 152 |||!..||||||!:! :!!!.!.!!.!!||||||.!!|||:!! ! !.!! !! AlaSerPheGlyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheT 213216 : GCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCA : 213275 153 : euCysPheCysPheValThrAlaLeuAsnThrLeuGluIleGlnIleGlyAsnGluTh : 171 !! !!:!! !.!!|||..! !!:!!!:!.!! !:!!!!: ! ! !:!! !. hrPheTyrPheLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAs 213276 : CGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAA : 213332 172 : rArgIleLeuHisValLeuProCysAlaValTyrLysLysLeuValAsnValAspGlu : 190 ! !! !!!!... !:!! ! ! !!|||! !:! :!!|||:!!||| ! nValThrPheArgGlnMetValValProValSerArgPheIleValAspValArgTyr 213333 : CGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATAC : 213389 191 : SerProThrAsnGluPheMetIlePheLeuGlnIleTrpSerThrPheIleAlaAsnC : 210 ||||||..!||||||.!..!..!!!!.:!!|||||| :!! ! ! :!: !:!!. SerProValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisA 213390 : AGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATG : 213449 211 : ysSerThrValGlyIlePheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGlyGl : 229 .!! !.!!|||! ! !! !|||||||||||||||!!!|||!.!|||||||||||||| laIleAlaValValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGl 213450 : CTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACA : 213506 230 : nLeuAsnValValMetLeuTrpIleAlaGluPheValAsnGluAlaThrValLysSer : 248 |:!!..!:!!:!!||| !|||:!:! !.!.!!.:!!:!!! ! !! !! !||| nMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGlyArgGluAspMetSer 213507 : GATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGC : 213563 249 : ArgThrGlyGlyPheThrLysIleGlyIleIleValGluArgHisLeuArgThrLeuA : 268 !:!!.!! !! ! !!:!|||!.!:!!||||||.!.!:!|||:!!|||! !|||! LysAsnValAsp---AspArgIleAlaValIleValAsnGlnHisValArgIleLeuL 213564 : AAGAATGTGGAC---GACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTGA : 213620 269 : snPheIle : 270 !.!:::!: ysTrpVal 213621 : AGTGGGTG : 213628 vulgar: gi|350422524|ref|XP_003493190.1| 16 270 . KQ414889.1 212869 213628 + 393 M 236 708 G 1 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212870 213628 393 + . gene_id 13 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212870 213628 . + . KQ414889.1 exonerate:protein2genome:local exon 212870 213628 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212870 213628 393 + . alignment_id 13 ; Query gi|350422524|ref|XP_003493190.1| ; Align 212870 17 708 ; Align 213578 254 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 356 Query range: 301 -> 404 Target range: 272836 -> 273296 302 : GluTrpAlaGluHisAspValArgAsnLeuAlaSerTyrValMetMetPheIleAlaI : 321 ||||||.!!!!:|||||| !!!:!!:!|||.!!!!!||| !!|||!!:.!!|||:!!! GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 322 : leCysTyrAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuThrGluGln >>> : 339 !: :::||||||||||||::!|||||||||||||||:!!|||||||||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 340 : > Target Intron 1 >>>> CysLysLysIleGlyGluValValTyrMetThrA : 350 70 bp |||||||||||||||||||||||||||||||||| ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 351 : snTrpTyrTyrLeuProGlyLysThrIleLeuAspLeuIleMetValIleAlaArgSe : 369 ||||||||||||||||||||||| !|||||||||||||||:!!:!!|||:!!|||!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 370 : rAsnValValValHisIleThrAlaGlyLysLeuValHisMetSerValTyrThrPhe : 388 !!:!||||||:!! ! ||||||||||||!:!:!!|||! !|||||||||||||||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 389 : GlySer >>>> Target Intron 2 >>>> ValValLysThrGlyPheAlaTy : 398 |||..! 81 bp |||:!!|||!:!!.!|||||||| GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 399 : rLeuAsnLeuLeuGlnGln : 404 |||||||:!!|||!:!||| rLeuAsnMetLeuArgGln 273277 : CTTAAATATGCTACGACAA : 273296 vulgar: gi|350422524|ref|XP_003493190.1| 301 404 . KQ414889.1 272836 273296 + 356 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273296 356 + . gene_id 14 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273296 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273296 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273296 356 + . alignment_id 14 ; Query gi|350422524|ref|XP_003493190.1| ; Align 272837 302 111 ; Align 273018 339 156 ; Align 273255 391 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 355 Query range: 5 -> 267 Target range: 208176 -> 208959 6 : ValValIleGluAlaAspSerAsnSerAsnSerAspTyrSerLeuGlnLeuAsnArgT : 25 :!! !!:!!.!. !:!!! !!!.!:!:!! !..!!:!!:!:!!!::|||||| !| IlePheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValT 208177 : ATATTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGT : 208234 26 : rpPheLeuLysProIleGlyAlaTrpProSerSerProSerThrThrArgLeuGluLy : 44 || |||||| !||||||:!!||||||!!!||| !..! !:!! !!||||||!! rpThrLeuLysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAs 208235 : GGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAA : 208291 45 : sIleIleSerPheLeuLeuAsnThrIleCysTyrSerThrValIleIleThrAlaIle : 63 .! ! !.!!|||||||||..!:!! !!:!!!!! !:!! !.!!! !!.!||| nSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIle 208292 : CAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATA : 208348 64 : ProSerLeuLeuGlnMetIleLeuGluAsnGluSerIleAsnSerLysLeuLysAsnL : 83 |||!!! !:!! !||||||! ! !|||..!.!! !!..!:!!||||||! !! ProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleC 208349 : CCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCT : 208408 84 : euAspPheLeuSerHisLeuIleValSerIlePheThrTyrSerValLeuLeuLeuHi : 102 !..! !|||||| !!!!!!::!!:!!.!! ! !||| !:!!:!! !:!!!. ysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValAr 208409 : GTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCG : 208465 103 : sAsnLysAspIleArgArgCysValGluHisMetLysAlaAspTrpArgAlaValSer : 121 !.!. |||||||||!:!|||||||||:!!:!::!!|||||||||||| !|||..! gGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGlu 208466 : CGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAG : 208522 122 : ArgLysGluAspGlnHisValMetMetLysAsnAlaLysPheGlyArgTyrValAlaA : 141 !.!:!!||||||::! ! :!!|||:!! ! ||||||!..|||!.!||| ! :!! !! HisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleV 208523 : CACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCG : 208582 142 : laPheCysAlaIlePheValGlnGlySerValLeuCysPheCysPheValThrAlaLe : 160 .!.!.|||!.! !|||:!! ! |||.!.|||::: ::: .!!!.! ! !!|| alIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLe 208583 : TGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCT : 208639 161 : uAsnThrLeuGluIleGlnIleGlyAsnGluThrArgIleLeuHisValLeuProCys : 179 |!.! ! !:!!:!! ! !..!! !.! !! ! !... !||| !! ! uThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyr 208640 : CACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTAT : 208696 180 : AlaValTyrLysLysLeuValAsnValAspGluSerProThrAsnGluPheMetIleP : 199 !!||| !||| :!!:!!:!!||| ! ||||||..!||||||.!!.!. ! ProValProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrT 208697 : CCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATA : 208756 200 : heLeuGlnIleTrpSerThrPheIleAlaAsnCysSerThrValGlyIlePheSerLe : 218 :!!|||:!:! !||| !|||:!!|||:!! !! !||||||||| !! !.!!|| hrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLe 208757 : CGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTT : 208813 219 : uAlaAlaValLeuAlaAlaHisAlaCysGlyGlnLeuAsnValValMetLeuTrpIle : 237 |||||||:!!|||||| !||||||||||||||||||.!.:!!:!!|||! !|||!!: uAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMet 208814 : GGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATG : 208870 238 : AlaGluPheValAsnGluAlaThrValLysSerArgThrGlyGlyPheThrLysIleG : 257 ! !:!!!!.|||:!!! ! ! !! !:!!..!!:!!.! !! ! !!:!:!:! GluLysLeuValAspGlyArgGluAspGluGluLysAsnLeuAsp---GlnArgLeuA 208871 : GAGAAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGAT---CAGAGGTTGG : 208927 258 : lyIleIleValGluArgHisLeuArgThrLeu : 267 .!! !|||||||||!:!|||:!!|||..!:!! laAsnIleValGluGlnHisValArgValIle 208928 : CTAATATCGTGGAGCAGCATGTTCGAGTGATC : 208959 vulgar: gi|350422524|ref|XP_003493190.1| 5 267 . KQ414889.1 208176 208959 + 355 M 247 741 G 1 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208177 208959 355 + . gene_id 15 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208177 208959 . + . KQ414889.1 exonerate:protein2genome:local exon 208177 208959 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208177 208959 355 + . alignment_id 15 ; Query gi|350422524|ref|XP_003493190.1| ; Align 208177 6 741 ; Align 208918 254 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 346 Query range: 301 -> 405 Target range: 244441 -> 244948 302 : GluTrpAlaGluHisAspValArgAsnLeuAlaSerTyrValMetMetPheIleAlaI : 321 |||||||||||| !|||!.!!:!! !||| !!!!||| !!!!: .!!:!!|||| GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheIleAlaLeuValAlaI 244442 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTATAGCACTCGTTGCTA : 244499 322 : leCysTyrAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuThrGluGln >>> : 339 || !! !|||! !||||||||||||||||||.!!!!: !|||||||||||| leValSerAsnThrPheIleLeuCysTyrIleSerAspArgLeuThrGluGln++ 244500 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGACAGGCTGACAGAACAGgt... : 244555 340 : > Target Intron 1 >>>> CysLysLysIleGlyGluValValTyrMetThrA : 350 106 bp ||| !|||:!!|||||||||||||||||||||: ++CysLeuLysValGlyGluValValTyrMetThrA 244556 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 244692 351 : snTrpTyrTyrLeuProGlyLysThrIleLeuAspLeuIleMetValIleAlaArgSe : 369 !!||||||||||||||| !!:!! !|||||||||||||||:!!:!!||| !||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSe 244693 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATC : 244749 370 : rAsnValValValHisIleThrAlaGlyLysLeuValHisMetSerValTyrThrPhe : 388 ||||:!!||||||.!.|||||||||||||||:!!:!!|||||||||:!!||||||||| rAsnMetValValGluIleThrAlaGlyLysValLeuHisMetSerLeuTyrThrPhe 244750 : GAACATGGTCGTTGAAATCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTC : 244806 389 : GlySer >>>> Target Intron 2 >>>> ValValLysThrGlyPheAlaTy : 398 |||..! 89 bp ||||||||||||||||||||||| GlyAsp++ ++ValValLysThrGlyPheAlaTy 244807 : GGCGATgt.........................agGTAGTAAAAACAGGATTCGCCTA : 244925 399 : rLeuAsnLeuLeuGlnGlnMet : 405 |||||||:!!||| |||||| rLeuAsnMetLeuCysGlnMet 244926 : CTTGAATATGCTTTGTCAAATG : 244948 vulgar: gi|350422524|ref|XP_003493190.1| 301 405 . KQ414889.1 244441 244948 + 346 M 37 111 5 0 2 I 0 102 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244442 244948 346 + . gene_id 16 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244442 244552 . + . KQ414889.1 exonerate:protein2genome:local exon 244442 244552 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244553 244554 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244553 244658 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244657 244658 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244659 244814 . + . KQ414889.1 exonerate:protein2genome:local exon 244659 244814 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244815 244816 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244815 244903 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 244902 244903 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244904 244948 . + . KQ414889.1 exonerate:protein2genome:local exon 244904 244948 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244442 244948 346 + . alignment_id 16 ; Query gi|350422524|ref|XP_003493190.1| ; Align 244442 302 111 ; Align 244659 339 156 ; Align 244904 391 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 324 Query range: 301 -> 391 Target range: 277371 -> 277713 302 : GluTrpAlaGluHisAspValArgAsnLeuAlaSerTyrValMetMetPheIleAlaI : 321 ||||||:!!!!: !||||||!:!!..:!!.!!!!!:!! !!|||!!:.!!|||:!!! GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 322 : leCysTyrAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuThrGluGln >>> : 339 !:|||:::||||||||| !:!!|||||||||||||||:!!|||||||||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 340 : > Target Intron 1 >>>> CysLysLysIleGlyGluValValTyrMetThrA : 350 72 bp |||||||||:!!|||||||||||||||||||||| ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 351 : snTrpTyrTyrLeuProGlyLysThrIleLeuAspLeuIleMetValIleAlaArgSe : 369 |||||||||||||||||! !||| !||||||:!!|||:!!:!::!!|||:!!||||| snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 370 : rAsnValValValHisIleThrAlaGlyLysLeuValHisMetSerValTyrThrPhe : 388 |!:!:::|||::: ||||||||||||||||||:::...|||||||||||||||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 389 : GlySerVal : 391 |||..!||| GlyAspVal 277703 : GGCGATGTA : 277713 vulgar: gi|350422524|ref|XP_003493190.1| 301 391 . KQ414889.1 277371 277713 + 324 M 37 111 5 0 2 I 0 68 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277713 324 + . gene_id 17 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277713 324 + . alignment_id 17 ; Query gi|350422524|ref|XP_003493190.1| ; Align 277372 302 111 ; Align 277555 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 268 Query range: 301 -> 394 Target range: 254071 -> 254442 302 : GluTrpAlaGluHisAspValArgAsnLeuAlaSerTyrValMetMetPheIleAlaI : 321 ||||||.!!||| !|||!.!!:!! ||| !!!!|||:!!:!:! .!!:!!|||: GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaV 254072 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTG : 254129 322 : leCysTyrAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuThrGluGlnCysLy : 340 !! ! ||| |||::::::|||||||||.!!!!: !|||||||||||| :! alValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGlnValGl 254130 : TTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGGTACA : 254186 341 : sLys{I} >>>> Target Intron 1 >>>> {le}GlyGluValValTyrMet : 348 !:!!{|} 92 bp {||}|||||||||||||||||| nGlu{I}-+ ++{le}GlyGluValValTyrMet 254187 : AGAG{A}ct.........................ag{TT}GGTGAAGTGGTTTACATG : 254302 349 : ThrAsnTrpTyrTyrLeuProGlyLysThrIleLeuAspLeuIleMetValIleAlaA : 368 |||:!!||||||||||||||| !!:!! !|||||||||||||||:!!:!!|||.!!| ThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrA 254303 : ACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACAC : 254362 369 : rgSerAsnValValValHisIleThrAlaGlyLysLeuValHisMetSerValTyrTh : 387 |||||||||||||||||.!.|||||||||||||||::: |||||||||:!!||||| rgSerAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrTh 254363 : GATCGAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACAC : 254419 388 : rPheGlySerValValLysThr : 394 |||||||..!||| !:!!||| rPheGlyAspValSerGluThr 254420 : GTTCGGCGATGTAAGTGAAACT : 254442 vulgar: gi|350422524|ref|XP_003493190.1| 301 394 . KQ414889.1 254071 254442 + 268 M 40 120 S 0 1 5 0 2 I 0 88 3 0 2 S 1 2 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254072 254442 268 + . gene_id 18 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254072 254192 . + . KQ414889.1 exonerate:protein2genome:local exon 254072 254192 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254193 254194 . + . intron_id 1 ; splice_site "CT" KQ414889.1 exonerate:protein2genome:local intron 254193 254284 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254283 254284 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254285 254442 . + . KQ414889.1 exonerate:protein2genome:local exon 254285 254442 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254072 254442 268 + . alignment_id 18 ; Query gi|350422524|ref|XP_003493190.1| ; Align 254072 302 120 ; Align 254287 343 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 248 Query range: 337 -> 406 Target range: 264723 -> 265010 338 : GlnCysLysLysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProGlyL : 357 ||||||||||||:!!||||||||||||||||||:!!|||||||||||||||||| !| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 358 : ysThrIleLeuAspLeuIleMetValIleAlaArgSerAsnValValValHisIleTh : 376 || !|||||||||||||||:!::!!||| !||||||!:!|||||| !! ! .!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 377 : rAlaGlyLysLeuValHisMetSerValTyrThrPheGlySer >>>> Target I : 391 ||||||||||:!!:!!|||||||||:!!|||||||||.!!..! 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 392 : ntron 1 >>>> ValValLysThrGlyPheAlaTyrLeuAsnLeuLeuGlnGlnMe : 405 bp |||:!!|||:!!..!|||.!!|||||||||||||||!::|||! ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArgGlnTh 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGCCAAAC : 265005 406 : tMet : 406 !||| rMet 265006 : GATG : 265010 vulgar: gi|350422524|ref|XP_003493190.1| 337 406 . KQ414889.1 264723 265010 + 248 M 53 159 5 0 2 I 0 76 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265010 248 + . gene_id 19 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265010 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265010 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265010 248 + . alignment_id 19 ; Query gi|350422524|ref|XP_003493190.1| ; Align 264724 338 159 ; Align 264963 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 241 Query range: 293 -> 391 Target range: 214605 -> 215022 294 : ValIleGlyTyrPheIleValSerGluTrpAlaGluHisAspValArgAsnLeuAlaS : 313 :::::: :::...|||::: |||||| !..!:!!:!!:!!! !!.! !!.!! IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 314 : erTyrValMetMetPheIleAlaIleCysTyrAsnIlePheIleLeuCysTyrIleGl : 332 !!||||||:!!:!!!:!|||:!!::: :::||||||||||||...||||||||||| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 333 : yGluLeuLeuThrGluGln >>>> Target Intron 1 >>>> CysLysLysI : 342 |||||||:!!:!!|||||| 123 bp |||||||||: yGluLeuValSerGluGln++ ++CysLysLysV 214721 : CGAGCTTGTGTCTGAACAGgt.........................agTGCAAAAAGG : 214873 343 : leGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProGlyLysThrIleLeuAs : 361 !!||||||||| !||||||! !.!.|||||| |||||||||!!.! !! ||| alGlyGluValSerTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCy 214874 : TCGGAGAAGTATCGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTG : 214930 362 : pLeuIleMetValIleAlaArgSerAsnValValValHisIleThrAlaGlyLysLeu : 380 !! !|||:!!:!!!!:|||! !|||||| ! !||| ! .!!|||||||||!!.:!! sCysIleLeuIleMetAlaMetSerAsnSerSerValLysPheThrAlaGlyAsnMet 214931 : TTGCATTTTGATCATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATG : 214987 381 : ValHisMetSerValTyrThrPheGlySerVal : 391 |||.!.:!!|||:!! !||||||.!!|||||| ValGluLeuSerIleSerThrPheSerSerVal 214988 : GTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215022 vulgar: gi|350422524|ref|XP_003493190.1| 293 391 . KQ414889.1 214605 215022 + 241 M 45 135 5 0 2 I 0 119 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 215022 241 + . gene_id 20 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 215022 241 + . alignment_id 20 ; Query gi|350422524|ref|XP_003493190.1| ; Align 214606 294 135 ; Align 214864 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 231 Query range: 181 -> 391 Target range: 300222 -> 302036 182 : TyrLysLysLeuValAsnValAspGluSerProThrAsnGluPheMetIlePheLeuG : 201 ||| ! !!!!:!!:!!..!.!. ||||||||| !!|||...:::...|||.... TyrAspTrpPheIleAspThrGlnThrSerProThrTyrGluIleValPhePhePheH 300223 : TACGATTGGTTTATCGATACACAAACCAGTCCTACCTACGAgatcgtatttttctttc : 300280 202 : lnIleTrpSerThrPheIleAlaAsnCysSerThrValGlyIlePheSerLeuAlaAl : 220 .. ::::!!.!!.!.||| ! !! ! !|||..!!.! !:!||||||||||| isCysPheAlaAlaMetIleMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAl 300281 : actgttTCGCAGCGATGATCATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGC : 300337 221 : aValLeuAlaAlaHisAlaCysGlyGlnLeuAsnValValMetLeuTrpIleAlaGlu : 239 |:!!!!!!.!.!!||| !|||||||||:!!.!.:!! !||| ! ! :!:! !!!: aIlePheValThrHisIleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAsp 300338 : GATATTCGTCACTCATATCTGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGAT : 300394 240 : PheValAsnGluAlaThrValLysSerArgThrGlyGlyPheThrLysIleGlyIleI : 259 .!.|||.!...!.!! !! !|||..! ! !||| ! ! :!:! !:!!| LeuValGluArgThrGlyGluLysAsp------AspGlyProAspProLeuValValI 300395 : CTGGTGGAGAGGACGGGAGAGAAGGAC------GACGGTCCTGATCCTTTGGTCGTTA : 300448 260 : leValGluArgHisLeuArgThrLeu{As} >>>> Target Intron 1 >>>> : 268 |||||..! !|||:!!!:!..!|||{!.} 1110 bp leValArgAspHisValLysValLeu{Ar}++ + 300449 : TCGTTCGAGATCACGTGAAGGTTTTA{AG}gt.........................a : 301585 269 : {n}PheIleSerTyrIleGluGlyValMetAsnLysIleCysPheLeuGluMetLeu : 286 {.} ! !!!! !.!!... ! !! ! ! :!!||| ::: ... +{g}AspProCysSerPheArg***ProThrPheHisLeuCysAlaValIleLysPhe 301586 : g{A}GACCCGTGTTCCTTCCGTTAGCCAACTTTTCATCTCTGCgctgtaattaaattt : 301639 287 : ArgCysThrMetGluIleCysValIleGlyTyrPheIleValSerGluTrpAlaGluH : 306 ... |||:!:.!. ! !!:!! !! .!! ! !!! !|||||| !.!. GluSerThrLeuAsnAlaLysPheLeuArgValIle***Phe***GluTrpGlnAsnS 301640 : gaatctACTTTAAATGCAAAGTTTTTACGAGTAATTTGATTTTAGGAATGGCAAAATA : 301699 307 : isAspValArgAsnLeuAlaSerTyrValMetMetPheIleAlaIleCysTyrAsnIl : 325 !|||..!! ! !:!! !!!!!:! !!! :!!!!.! :!!.!! !!:!||||| erAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAsnIl 301700 : GCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATAT : 301756 326 : ePheIleLeuCysTyrIleGlyGluLeuLeuThrGluGln >>>> Target Intr : 339 |||||||!!!|||||||||||||||:!!|||:!!|||||| 80 bp ePheIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301757 : ATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt................ : 301800 340 : on 2 >>>> CysLysLysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLe : 354 |||!..:!!||||||..!!.! !||| !! !:!!|||||| !!|| ++CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLe 301801 : .........agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTT : 301923 355 : uProGlyLysThrIleLeuAspLeuIleMetValIleAlaArgSerAsnValValVal : 373 ||||!.!|||! ! !! !|||||||||:!::!!! !!.!! !|||.!. ! ! ! uProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProPro 301924 : ACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCG : 301980 374 : HisIleThrAlaGlyLysLeuValHisMetSerValTyrThrPheGlySerVal : 391 ! :!!||||||||||||:!!:!! !!:!:|||:!! !!||||||.!!|||||| LysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301981 : AAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: gi|350422524|ref|XP_003493190.1| 181 391 . KQ414889.1 300222 302036 + 231 M 67 201 G 2 0 M 17 51 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 70 210 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300223 302036 231 + . gene_id 21 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300223 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300223 300476 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300223 302036 231 + . alignment_id 21 ; Query gi|350422524|ref|XP_003493190.1| ; Align 300223 182 201 ; Align 300424 251 51 ; Align 301588 269 210 ; Align 301878 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 227 Query range: 337 -> 397 Target range: 238625 -> 238805 338 : GlnCysLysLysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProGlyL : 357 |||||| !|||:!!|||||||||||||||||||||:!!||||||||||||||| !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 358 : ysThrIleLeuAspLeuIleMetValIleAlaArgSerAsnValValValHisIleTh : 376 :!! !|||||||||||||||:!!:!!||| !|||||||||||||||||| ! :!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 377 : rAlaGlyLysLeuValHisMetSerValTyrThrPheGlySerValValLysThrGly : 395 ||||||||||:!!:!!|||||||||:!!||||||||||||..!||| !:!!|||..! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 396 : PheAla : 397 .!!||| LeuAla 238798 : CTTGCT : 238805 vulgar: gi|350422524|ref|XP_003493190.1| 337 397 . KQ414889.1 238625 238805 + 227 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238805 227 + . gene_id 22 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238805 227 + . alignment_id 22 ; Query gi|350422524|ref|XP_003493190.1| ; Align 238626 338 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 186 Query range: 336 -> 391 Target range: 283273 -> 283438 337 : GluGlnCysLysLysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProG : 356 ..!||||||||||||:!!||||||||||||||||||||||||! !!:!|||||||||! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 357 : lyLysThrIleLeuAspLeuIleMetValIleAlaArgSerAsnValValValHisIl : 375 !||| !||||||:!!|||:!!:!::!!|||:!!||||||!:!:::|||::: || spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 376 : eThrAlaGlyLysLeuValHisMetSerValTyrThrPheGlySerVal : 391 |||||||...||||||:::...||||||!.!|||||||||! !..!||| eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspVal 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTA : 283438 vulgar: gi|350422524|ref|XP_003493190.1| 336 391 . KQ414889.1 283273 283438 + 186 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283438 186 + . gene_id 23 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283438 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283438 186 + . alignment_id 23 ; Query gi|350422524|ref|XP_003493190.1| ; Align 283274 337 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 297 -> 391 Target range: 305088 -> 305783 298 : PheIleValSerGluTrpAlaGluHisAspValArgAsnLeuAlaSerTyrValMetM : 317 :::::: ..!!!:|||! !... !:!!..! !!:!|||.!!!!!|||..!:!!: TyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValL 305089 : tatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGT : 305146 318 : etPheIleAlaIleCysTyrAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuTh : 336 !:.!.|||:!!:!! !:!||||||||||||||||||||||||||||||:!!|||! euLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMe 305147 : TACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTAT : 305203 337 : rGluGlnCys{Ly} >>>> Target Intron 1 >>>> {s}LysIleGlyGlu : 344 !|||:!! {!.} 413 bp {.}!..:!!||| ! tGluLysVal{Se}-+ ++{r}SerValGlyLeu 305204 : GGAAAAGGTG{ag}tt.........................ag{T}AGCGTTGGATTA : 305640 345 : ValValTyrMetThrAsnTrpTyrTyrLeuProGlyLysThrIleLeuAspLeuIleM : 364 ! !!:!|||! !!:!||||||:!!|||||| !|||||||||! !! !||||||: SerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleL 305641 : TCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTT : 305700 365 : etValIleAlaArgSerAsnValValValHisIleThrAlaGlyLysLeuValHisMe : 383 !::!!||||||! !|||!:! ! !!.! ! |||!:!|||||||||:!!||| !!:! euIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysValValAspLe 305701 : TAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTT : 305757 384 : tSerValTyrThrPheGlySerVal : 391 :|||:!!! !|||||||||!:!||| uSerLeuSerThrPheGlyAsnVal 305758 : ATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: gi|350422524|ref|XP_003493190.1| 297 391 . KQ414889.1 305088 305783 + 177 M 42 126 S 0 2 5 0 2 I 0 409 3 0 2 S 1 1 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305089 305783 177 + . gene_id 24 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305089 305216 . + . KQ414889.1 exonerate:protein2genome:local exon 305089 305216 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305217 305218 . + . intron_id 1 ; splice_site "tt" KQ414889.1 exonerate:protein2genome:local intron 305217 305629 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305628 305629 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305630 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305630 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305089 305783 177 + . alignment_id 24 ; Query gi|350422524|ref|XP_003493190.1| ; Align 305089 298 126 ; Align 305631 341 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 300 -> 391 Target range: 224320 -> 224658 301 : SerGluTrpAlaGluHisAspValArgAsnLeuAlaSerTyrValMetMetPheIleA : 320 ...||||||:::... !!:!!! !!:! !!.!!!!||| !!!!::!:.!!!!:: GlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetS 224321 : CaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGT : 224378 321 : laIleCysTyrAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuThrGluGlnCy : 339 !:::: :::||||||||||||...||||||||||||||||||:!!.!!|||||| erLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlnVa 224379 : CtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggt : 224435 340 : sLys{L} >>>> Target Intron 1 >>>> {ys}IleGlyGluValValTyr : 347 |||{|} 65 bp {||}||||||::!||| !||| lLys{L}-+ +-{ys}IleGlyGlnValSerTyr 224436 : gaaa{a}at.........................aa{aa}attggacaAGTGTCGTAC : 224524 348 : MetThrAsnTrpTyrTyrLeuProGlyLysThrIleLeuAspLeuIleMetValIleA : 367 |||! !:!!|||||| ||| !!|||!!.! !! !||| !! !|||:!!:!!|||| MetIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleA 224525 : ATGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCG : 224584 368 : laArgSerAsnValValValHisIleThrAlaGlyLysLeuValHisMetSerValTy : 386 ||! !|||||| ! !:!! ! :!:|||||||||!!.:!!|||.!.:!!!!!:!! laMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuTh 224585 : CGATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAAC : 224641 387 : rThrPheGlySerVal : 391 !|||||||||..!||| rThrPheGlyAspVal 224642 : CACTTTCGGTGACGTA : 224658 vulgar: gi|350422524|ref|XP_003493190.1| 300 391 . KQ414889.1 224320 224658 + 171 M 40 120 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224321 224658 171 + . gene_id 25 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224321 224441 . + . KQ414889.1 exonerate:protein2genome:local exon 224321 224441 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224442 224443 . + . intron_id 1 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local intron 224442 224506 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224505 224506 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 224507 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224507 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224321 224658 171 + . alignment_id 25 ; Query gi|350422524|ref|XP_003493190.1| ; Align 224321 301 120 ; Align 224509 342 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 301 -> 391 Target range: 206050 -> 206401 302 : GluTrpAlaGluHisAspValArgAsnLeuAlaSerTyrValMetMetPheIleAlaI : 321 ||||||! !.!.:!!:!!..!! ! :!! ! !|||:!!! !:!! |||:!! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 322 : leCysTyrAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuThrGluGln >>> : 339 ! !:! !:!!|||||||||||||||||||||:!!||||||! !!!:||| ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 340 : > Target Intron 1 >>>> CysLysLysIleGlyGluValValTyrMetThrA : 350 81 bp ! ! :!:||| !..! !! !! !..!| ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 351 : snTrpTyrTyrLeuProGlyLysThrIleLeuAspLeuIleMetValIleAlaArgSe : 369 |||||||| !||||||..!!:! ! ! !..!:!!|||:!!:!!||||||! !|| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 370 : rAsnValValValHisIleThrAlaGlyLysLeuValHisMetSerValTyrThrPhe : 388 |||| ! !:!! ! :!!||||||||||||:!! !!.!.||||||:!! !!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 389 : GlySerVal : 391 !..!||| ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: gi|350422524|ref|XP_003493190.1| 301 391 . KQ414889.1 206050 206401 + 159 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 159 + . gene_id 26 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 159 + . alignment_id 26 ; Query gi|350422524|ref|XP_003493190.1| ; Align 206051 302 111 ; Align 206243 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 17 -> 116 Target range: 299689 -> 299989 18 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpPro<->SerS : 36 |||!!!||||||:!! !!:!|||!!.|||||||||||||||!.!|||! ! !. TyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpArgLeuLeuA 299690 : TACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGCGATTGCTAG : 299747 37 : erProSerThrThrArgLeuGluLysIleIleSerPheLeuLeuAsnThrIleCysTy : 55 .!! ! !!:!!!:!!:!|||||| ! :!!:!!|||.!!:!!|||! |||||||||!: spGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMetThrIleCysPh 299748 : ATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATGACAATATGCTT : 299804 56 : rSerThrValIleIleThrAlaIleProSerLeuLeuGlnMetIleLeuGluAsnGlu : 74 !|||!:!:!!.!!.!!! !!.!:!:|||||| !! ! ! !!:.!!!!!! !.!.:!! eSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePhePheAlaGluLys 299805 : CTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCTTCGCGGAGAAA : 299861 75 : SerIleAsnSerLysLeuLysAsnLeuAspPheLeuSerHisLeuIleValSerIleP : 94 ||||||:!! !|||:!!||| !!!! ! :!!.!! !! !:!! !|||||| SerIleHisValLysValLysValPheGlyProValGlyPheCysLeuSerSerIleV 299862 : AGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCATCG : 299921 95 : heThrTyrSerValLeuLeuLeuHisAsnLysAspIleArgArgCysValGluHisMe : 113 !!! !|||!!! !|||! !|||:!!..! ! .!!..!||||||:!!:!!|||:! alLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCysIleGlnHisVa 299922 : TCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGCATCCAACACGT : 299978 114 : tLysAlaAsp : 116 ::!! !||| lGluArgAsp 299979 : CGAGAGAGAC : 299989 vulgar: gi|350422524|ref|XP_003493190.1| 17 116 . KQ414889.1 299689 299989 + 155 M 17 51 G 0 3 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299690 299989 155 + . gene_id 27 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299690 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299690 299989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299690 299989 155 + . alignment_id 27 ; Query gi|350422524|ref|XP_003493190.1| ; Align 299690 18 51 ; Align 299744 35 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 298 -> 341 Target range: 264528 -> 264657 299 : IleValSerGluTrpAlaGluHisAspValArgAsnLeuAlaSerTyrValMetMetP : 318 :!! !!..!||||||! !...||||||::::::||||||..!!!!||| !!|||!!:. ValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleL 264529 : GTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATAC : 264586 319 : heIleAlaIleCysTyrAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuThrGl : 337 !.|||:!!!!:||| !|||||||||:!!:!!|||||||||||||||:!!|||||||| euIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGl 264587 : TGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGA : 264643 338 : uGlnCysLysLys : 341 |||| ||| uGlnValIleLys 264644 : Gcaggtaattaaa : 264657 vulgar: gi|350422524|ref|XP_003493190.1| 298 341 . KQ414889.1 264528 264657 + 143 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264529 264657 143 + . gene_id 28 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264529 264657 . + . KQ414889.1 exonerate:protein2genome:local exon 264529 264657 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264529 264657 143 + . alignment_id 28 ; Query gi|350422524|ref|XP_003493190.1| ; Align 264529 299 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 112 -> 242 Target range: 304413 -> 304800 113 : MetLysAlaAspTrpArgAlaValSerArgLysGluAspGlnHisValMetMetLysA : 132 :!:....!!! !::..! !|||..! ! ..!|||!::.!.:!!|||:!:||| LeuSerThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysT 304414 : CTCTCTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAAT : 304471 133 : snAlaLysPheGlyArgTyrValAlaAlaPheCysAlaIlePheValGlnGlySerVa : 151 !!!.!:!!.!.|||||| !!:!!.!! !.!!||||||||||||:!! ! !.!!! yrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGl 304472 : ACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGG : 304528 152 : lLeuCysPheCysPheValThrAlaLeuAsnThrLeuGluIleGlnIleGlyAsnGlu : 170 ! ! !!:! ! |||! ! !!!! ||| ! !! ! :!:! !.!. ! yThrIleTyrHisThrValMetGlnPheAlaThr---GlyThrTyrValAspGluTyr 304529 : CACCATTTATCACACGGTCATGCAGTTCGCGACC---GGAACGTATGTGGATGAGTAT : 304582 171 : ThrArgIleLeuHisValLeuProCysAlaValTyrLysLysLeuValAsnValAspG : 190 !.!|||! :!! ! !||| !! ! !!..!|||!.. ||| !!:!!|||.!. AsnArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnT 304583 : AATCGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAA : 304642 191 : luSerProThrAsnGluPheMetIlePheLeuGlnIleTrpSerThrPheIleAlaAs : 209 !||||||! ! !!|||!!.:!: !|||:!!!!. ! !!!! !!:!:!! ! ! hrSerProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTy 304643 : CAAGCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTA : 304699 210 : nCysSerThrValGlyIlePheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGly : 228 !! !! !|||!.!||| !! !.!!|||||||||:!!!!!|||.!!|||||||||||| rSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGly 304700 : TTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGA : 304756 229 : GlnLeuAsnValValMetLeuTrpIleAlaGluPheValAsn : 242 |||:!!:!!:!!||||||! ! ! :!:!.!!!:.!!|||||| GlnIleAspIleValMetSerArgLeuGlyAspLeuValAsn 304757 : CAAATTGATATCGTTATGTCTCGATTGGGTGATCTTGTCAAC : 304800 vulgar: gi|350422524|ref|XP_003493190.1| 112 242 . KQ414889.1 304413 304800 + 139 M 50 150 G 1 0 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304414 304800 139 + . gene_id 29 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304414 304800 . + . KQ414889.1 exonerate:protein2genome:local exon 304414 304800 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 304414 304800 139 + . alignment_id 29 ; Query gi|350422524|ref|XP_003493190.1| ; Align 304414 113 150 ; Align 304564 164 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 301 -> 342 Target range: 238411 -> 238534 302 : GluTrpAlaGluHisAspValArgAsnLeuAlaSerTyrValMetMetPheIleAlaI : 321 |||||||||||| !|||!.!!:!! !||| !!!!||| !!:!: .!!:!!|||| GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheValAlaLeuValAlaI 238412 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTGTAGCACTCGTTGCTA : 238469 322 : leCysTyrAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuThrGluGlnCysLy : 340 || !! !|||! !||||||||||||||||||.!!||| !|||||||||||| :! leValSerAsnThrPheIleLeuCysTyrIleSerGluArgLeuThrGluGlnValGl 238470 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGAAAGGCTGACAGAACAGGTACA : 238526 341 : sLysIle : 342 !:!!||| nGluIle 238527 : AGAGATT : 238534 vulgar: gi|350422524|ref|XP_003493190.1| 301 342 . KQ414889.1 238411 238534 + 113 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238412 238534 113 + . gene_id 30 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238412 238534 . + . KQ414889.1 exonerate:protein2genome:local exon 238412 238534 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238412 238534 113 + . alignment_id 30 ; Query gi|350422524|ref|XP_003493190.1| ; Align 238412 302 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 297 -> 338 Target range: 210651 -> 210774 298 : PheIleValSerGluTrpAlaGluHisAspValArgAsnLeuAlaSerTyrValMetM : 317 |||:!!:!!! !||||||! !... ! ||| !! !!:! ! !!!!|||:!!:!:: PheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValL 210652 : TTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTAC : 210709 318 : etPheIleAlaIleCysTyrAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuTh : 336 !:.!!! !:!!:!! !:!||||||||||||!!!|||||||||||||||:!!|||.! euLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAl 210710 : TCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGC : 210766 337 : rGluGln : 338 !|||||| aGluGln 210767 : TGAACAg : 210774 vulgar: gi|350422524|ref|XP_003493190.1| 297 338 . KQ414889.1 210651 210774 + 102 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210652 210774 102 + . gene_id 31 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 210652 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210652 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210652 210774 102 + . alignment_id 31 ; Query gi|350422524|ref|XP_003493190.1| ; Align 210652 298 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 337 -> 391 Target range: 292389 -> 292551 338 : GlnCysLysLysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProGlyL : 357 ||| !!!..:!!|||!.!.!.!.! !||| |||.!.|||||| !!|||||| !!: GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 358 : ysThrIleLeuAspLeuIleMetValIleAlaArgSerAsnValValValHisIleTh : 376 :!! ! !! !|||:!!:!!:!!|||:!!|||! !!!!!!. ! !:!! ! :!!|| rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 377 : rAlaGlyLysLeuValHisMetSerValTyrThrPheGlySerVal : 391 ||||||||||:!! !! !:!:|||:!! !!|||||||||:!!||| rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaVal 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTA : 292551 vulgar: gi|350422524|ref|XP_003493190.1| 337 391 . KQ414889.1 292389 292551 + 102 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 292551 102 + . gene_id 32 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292390 292551 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 292551 102 + . alignment_id 32 ; Query gi|350422524|ref|XP_003493190.1| ; Align 292390 338 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825627|ref|XP_012152698.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 529 Query range: 49 -> 304 Target range: 1706998 -> 1709252 50 : GluAsnLeuSerArgAsnGluSerAspLysAlaPheProPheArgMetTrpIleLy : 68 |||!:::::...:::||||||||||||!:! !.!! ! !!!.!.!.|||||| GluSerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIle-- 1706999 : GAAAgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATT-- : 1707053 69 : sSerIleProLeuGlnGluThrProTyrTyrGluIleCysTyrThrValGln >> : 86 ..!.!!||| ! !||||||||||||||||||! !:!||| !||| -AspPheProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707054 : -GACTTTCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt.. : 1707106 87 : >> Target Intron 1 >>>> AlaValSerValTyrMetValGlyArgThrT : 96 276 bp !.! !!! !||| ||| !!! !!:!| ++ValPheIleValMetTyrValCysIleSerT 1707107 : .......................agGTTTTTATCGTAATGTACGTTTGCATAAGCT : 1707410 97 : yrPheSerLeuAspAsnIleLeuCysIleIleAsnLeuHisLeuAlaGlyGlnPhe : 114 ||.!!!!!:!!||||||.!!||||||!!:|||||||||||| !||| !|||||| yrLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPhe 1707411 : ACCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTT : 1707464 115 : ArgMetLeuGlnTyrArgLeuSerGluLysTyrThrLysAsnGlnLysLysAsnAs : 133 |||!!:||||||||||||||||||.!. !! ! ! !|||:!!:::!..::: ArgIleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAspLy 1707465 : CGAATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcgataa : 1707521 134 : pGluSerArgAsnLeuLeuAspLeuAlaAsnAsnAlaThrAspIlePheLysSerC : 152 |||:::... ! !..! !:!!:!!.!...! !! !! ||||||!:!| sIleSerLysLysThrProSerAsnSerAspGluCysTyrAlaLysPheLysAsnC 1707522 : aatttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAAATT : 1707578 153 : ysIleArgGlnHisGlnAlaLeuValGluTyrCysGluGluValAspAlaValPhe : 170 |||||!:!|||||||||||||||:!!|||||||||.!.|||:!!.!.! !|||||| ysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluValPhe 1707579 : GCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGGTGTTC : 1707632 171 : SerProCysValLeuIleGlnValLeuAlaPheSerIlePheIleCysLeuAspGl : 189 .!! !! !|||||| !||||||||| !||||||:!:!!.!!:||||||||||| GlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAspGl 1707633 : GGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGG : 1707689 190 : yTyrGlnMetLeu >>>> Target Intron 2 >>>> LeuValAspIlePh : 198 |||| !:!!:!! 457 bp !! ! ! !.! yTyrLeuValMet++ ++GluAspThrProIl 1707690 : ATATTTGGTGATGgt.........................agGAAGATACTCCCAT : 1708173 199 : eGluArgGlnIleIlePheValPheHisPheLeuGlyThrValCysGlnLeuValM : 217 ! !!:!!:::!!! !|||:!!||||||.!. !||| !:!!|||||||||:!!| eMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuM 1708174 : TATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGA : 1708230 218 : etPheSerTyrSerCysAspCysIleIleArgGluSerGluLeuLeuAlaThrAla : 235 |||||!!!|||||||||||||||:!:|||||||||||| ! !:!!|||!.!||| etPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAla 1708231 : TGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCT : 1708284 236 : AlaPheSerGlyProTrpLeuGlnLeuProSerSerLysArgIleGluAsnLeuLy : 254 !!:!..! !! !!|||:!!!!.||||||! !..!!:! ! ..!! |||:: IleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuAr 1708285 : ATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCG : 1708341 255 : sLysAspPheIleMetLeuIleMetArgSerTyrLysSerCysTyrIleSerGlyL : 273 !||||||!!.! !.!.:!!||| |||||| ! !!|||! !:!!!!!!.!! gLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaC 1708342 : AAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTT : 1708398 274 : euGlyPhePheIleValSerLeuGluThrSerThrArg >>>> Target Intr : 286 !||||||||| !|||||||||||||||! !||| ! 759 bp ysGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708399 : GTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt................ : 1708439 287 : on 3 >>>> ValLeuThrThrAlaGlySerTyrPheThrLeuLeuGlnGluThr : 300 :!!|||!:!||||||!.!||||||||||||||||||!:!:!! ! ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgLysGln 1708440 : .........agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTACGAAAACAA : 1709238 301 : GlnThrLysVal : 304 :!!.!!:!!:!! GluAlaGluIle 1709239 : GAAGCAGAAATA : 1709252 vulgar: gi|805825627|ref|XP_012152698.1| 49 304 . KQ414915.1 1706998 1709252 + 529 M 18 54 G 1 0 M 17 51 5 0 2 I 0 272 3 0 2 M 108 324 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1706999 1709252 529 + . gene_id 1 ; sequence gi|805825627|ref|XP_012152698.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1706999 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1706999 1707103 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709252 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709252 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1706999 1709252 529 + . alignment_id 1 ; Query gi|805825627|ref|XP_012152698.1| ; Align 1706999 50 54 ; Align 1707053 69 51 ; Align 1707380 86 324 ; Align 1708161 194 276 ; Align 1709196 286 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825627|ref|XP_012152698.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 454 Query range: 83 -> 300 Target range: 1702010 -> 1703653 84 : ValGlnAlaValSerValTyrMetValGlyArgThrTyrPheSerLeuAspAsnIl : 102 !.!|||!.!:!!|||:!!||| |||||| ! !|||.!!!!!!!!||||||:! AlaGlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLe 1702011 : GCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCT : 1702065 103 : eLeuCysIleIleAsnLeuHisLeuAlaGlyGlnPheArgMetLeuGlnTyrArgL : 121 !||||||:!:!!:||||||||| !||| !|||||||||!!:||||||||||||| uLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgL 1702066 : TTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGT : 1702122 122 : euSerGluLysTyrThrLysAsnGlnLysLys<-><-><->AsnAspGluSerArg : 136 |||||.!. ! ! !! !|||::!|||:!! |||!!:...||| ! euSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAla 1702123 : TATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCA : 1702176 137 : AsnLeuLeuAspLeuAlaAsnAsnAlaThrAspIlePheLysSerCysIleArgGl : 155 !|||! ! !!!!|||.!.|||..! ! ! ||||||!:!|||:!!||||| AlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGl 1702177 : GCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACA : 1702233 156 : nHisGlnAlaLeuValGluTyrCysGluGluValAspAlaValPheSerProCysV : 174 ||||||| !! !:!! !||||||.!...!:!!:!!! !:!!|||!!! ! !| nHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleV 1702234 : ACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTG : 1702290 175 : alLeuIleGlnValLeuAlaPheSerIlePheIleCysLeuAspGlyTyrGlnMet : 192 ||||| !!!.:!!|||!.!||||||:!!.!.|||||||||! !|||!:!|||:!! alLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnVal 1702291 : TACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTG : 1702344 193 : LeuLeuValAspIlePhe{G} >>>> Target Intron 1 >>>> {lu}Ar : 200 |||:!!||| ! |||{!} 613 bp { !}|| LeuValValArg---Phe{A}-+ ++{la}Ar 1702345 : CTCGTGGTACGT---TTC{G}tt.........................ag{CG}AG : 1702978 201 : gGlnIleIlePheValPheHisPheLeuGlyThrValCysGlnLeuValMetPheS : 219 |!:!:!!! !||||||||||||.!.:!!|||!:!:!!|||||||||:!!:!:|||! gArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLeuLeuPheT 1702979 : GCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATTGCTATTTA : 1703035 220 : erTyrSerCysAspCysIleIleArgGluSerGluLeuLeuAlaThrAlaAlaPhe : 237 !!|||||||||||| !!:!:|||..!|||||| ! !:!!!.!|||||| !!:! hrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaIleTyr 1703036 : CCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGATATAC : 1703089 238 : SerGlyProTrpLeuGlnLeuProSerSerLysArgIleGluAsnLeuLysLysAs : 256 !|||||||||:!!!!.||||||! !..!||| ! !..!!..|||!:!!:!|| LeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArgArgAs 1703090 : CTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGAAGAGA : 1703146 257 : pPheIleMetLeuIleMetArgSerTyrLysSerCysTyrIleSerGlyLeuGlyP : 275 |!!.! !|||:!!|||:!:|||||| |||||| !!! !:!!!!!!.! !|||| pLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSerGlyP 1703147 : CTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAGCGGAT : 1703203 276 : hePheIleValSerLeuGluThrSerThrArg >>>> Target Intron 2 > : 286 ||||| !|||||||||||||||!!!|||! ! 373 bp hePheProValSerLeuGluThrCysThrThr++ 1703204 : TCTTTCCTGTTTCGCTGGAAACTTGTACCACGgt...................... : 1703238 287 : >>> ValLeuThrThrAlaGlySerTyrPheThrLeuLeuGlnGluThr : 300 ||||||!:!|||||| !||||||||||||||||||::!.!.:!! ++ValLeuSerThrAlaMetSerTyrPheThrLeuLeuArgHisSer 1703239 : ...agGTGCTCAGTACAGCGATGTCATACTTCACTTTATTAAGGCACTCT : 1703653 vulgar: gi|805825627|ref|XP_012152698.1| 83 300 . KQ414915.1 1702010 1703653 + 454 M 48 144 G 0 9 M 65 195 G 1 0 M 1 3 S 0 1 5 0 2 I 0 609 3 0 2 S 1 2 M 86 258 5 0 2 I 0 369 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702011 1703653 454 + . gene_id 2 ; sequence gi|805825627|ref|XP_012152698.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702011 1702362 . + . KQ414915.1 exonerate:protein2genome:local exon 1702011 1702362 . + . insertions 9 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1702363 1702364 . + . intron_id 1 ; splice_site "TT" KQ414915.1 exonerate:protein2genome:local intron 1702363 1702975 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702974 1702975 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1702976 1703235 . + . KQ414915.1 exonerate:protein2genome:local exon 1702976 1703235 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1703236 1703237 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1703236 1703608 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1703607 1703608 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1703609 1703653 . + . KQ414915.1 exonerate:protein2genome:local exon 1703609 1703653 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702011 1703653 454 + . alignment_id 2 ; Query gi|805825627|ref|XP_012152698.1| ; Align 1702011 84 144 ; Align 1702164 132 195 ; Align 1702359 198 3 ; Align 1702978 200 258 ; Align 1703609 286 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825627|ref|XP_012152698.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 390 Query range: 83 -> 304 Target range: 1694860 -> 1696269 84 : ValGlnAlaValSerValTyrMetValGlyArgThrTyrPheSerLeuAspAsnIl : 102 :!!|||.!!:!!!!!|||||| ||||||! ! !|||.!.!!!!!!|||||||| LeuGlnThrLeuCysValTyrHisValGlyIleCysTyrMetCysPheAspAsnIl 1694861 : CTGCAGACACTTTGCGTGTACCATGTCGGTATATGTTACATGTGCTTCGACAACAT : 1694915 103 : eLeuCysIleIleAsnLeuHisLeuAlaGlyGlnPheArgMetLeuGlnTyrArgL : 121 |||| !!:!!:!:|||||||||:!!||| !|||||||||!!:||||||||||||! eLeuSerLeuLeuAsnLeuHisValAlaThrGlnPheArgIleLeuGlnTyrArgP 1694916 : CCTCAGCCTTCTGAATCTTCACGTGGCCACTCAATTTCGTATCCTTCAATACCGAT : 1694972 122 : euSerGluLysTyrThrLysAsnGlnLysLysAsnAspGluSerArgAsnLeuLeu : 139 !!! !.!. ! !!.! !! !:!!|||:!!!..|||! ... ::: heMetAsnLeuSerAsnValIleGluLysGlnThrAspGlyArgGluLeuGluIle 1694973 : TCATGAATTTGAGTAATGTAATTGAGAAGCAAACAGACGGTcgagaattggaaatt : 1695026 140 : AspLeuAlaAsnAsnAlaThrAspIlePhe<-><-><->LysSerCysIleArgGl : 155 ! !.!!||| !.!!..!|||! !!:! |||||||||:!:!:! ! GlyTyrThrAsnPheThrValAspSerTyrLeuGlnLeuLysSerCysValGlnTy 1695027 : ggtTACACAAATTTCACAGTCGATAGTTACTTACAATTGAAGAGTTGCGTGCAATA : 1695083 156 : nHisGlnAlaLeuValGluTyrCysGluGluValAspAlaValPheSerProCysV : 174 ||||||||||||..!! ||||||:!!:!!:!!!!: !:!!|||||| ! !| rHisGlnAlaLeuThrGlyTyrCysLysLysLeuGluAsnIlePheSerLeuLeuV 1695084 : CCATCAGGCACTTACAGGCTATTGCAAAAAGTTGGAGAACATATTTTCGTTGCTTG : 1695140 175 : alLeuIleGlnValLeuAlaPheSerIlePheIleCysLeuAspGlyTyrGlnMet : 192 ||||| !||||||||| !.!.:!!!!: ! :!!||||||! |||||||||:!: alLeuGlyGlnValLeuPheLeuAlaMetValLeuCysLeuValGlyTyrGlnLeu 1695141 : TGCTTGGACAAGTGCTTTTCCTAGCCATGGTACTTTGCCTCGTGGGATATCAGCTA : 1695194 193 : LeuLeuValAspIlePheGluArgGlnIleIlePheValPheHisPheLeu{G} : 210 !!!||||||..!:!: ...! !!:!! ... ||| :::...{|} PheLeuValSerLeuGluArgThrArgSerSerIle***PhePheTyrPhe{G}-- 1695195 : TTTCTGGTAAGTTTGGAACGTACTCGAAGcagtatataatttttttatttc{g}tg : 1695249 211 : >>>> Target Intron 1 >>>> {ly}ThrValCysGlnLeuValMetPheS : 219 418 bp {||}|||:!!||||||||| !!||||||! ++{ly}ThrLeuCysGlnLeuPheMetPheT 1695250 : .........................ag{GC}ACTTTGTGTCAACTTTTTATGTTCA : 1695693 220 : erTyrSerCysAspCysIleIleArgGluSerGluLeuLeuAlaThrAlaAlaPhe : 237 !!|||||||||||| !!:!:! !||||||||| ! !:!!::!! !|||!.!||| hrTyrSerCysAspGlyLeuThrArgGluSerMetAspValSerArgAlaValPhe 1695694 : CGTACAGTTGCGATGGTTTGACAAGAGAGAGCATGGACGTTAGCAGAGCTGTATTT : 1695747 238 : SerGlyProTrpLeuGlnLeuProSerSerLysArgIleGluAsnLeuLysLysAs : 256 :!! !!|||||| !.!.||||||! !..!!:!!.! :!!!:!:!!::!:!!.. AlaArgProTrpAlaAsnLeuProMetAspArgAsnGlyLysSerValArgGlnSe 1695748 : GCAAGACCGTGGGCAAATCTGCCAATGGATAGAAATGGGAAAAGTGTGCGACAAAG : 1695804 257 : pPheIleMetLeuIleMetArgSerTyrLysSerCysTyrIleSerGlyLeuGlyP : 275 !.!.:!!|||:!!|||||||||||| !!!:!!!!|||! !:!!!!!!.! !|||| rMetLeuMetValIleMetArgSerAsnArgCysCysCysLeuThrAlaSerGlyP 1695805 : CATGCTAATGGTGATCATGAGGTCGAACAGGTGTTGCTGCTTAACAGCCAGCGGGT : 1695861 276 : hePheIleValSerLeuGluThrSerThrArg >>>> Target Intron 2 > : 286 ||||| !|||||||||||||||! !||| !! 319 bp hePheProValSerLeuGluThrTyrThrGly++ 1695862 : TCTTTCCAGTTTCTCTCGAGACTTACACTGGGgt...................... : 1695896 287 : >>> ValLeuThrThrAlaGlySerTyrPheThrLeuLeuGlnGluThrGlnThr : 302 ||||||!:!|||||| !||||||||||||||||||::!:!!:!! ! ! ++ValLeuSerThrAlaMetSerTyrPheThrLeuLeuArgGlnSerThrMet 1695897 : ...agGTCCTCAGCACTGCAATGTCATACTTTACACTACTGAGACAATCGACTATG : 1696261 303 : LysVal : 304 !..:!! SerIle 1696262 : AGCATA : 1696269 vulgar: gi|805825627|ref|XP_012152698.1| 83 304 . KQ414915.1 1694860 1696269 + 390 M 66 198 G 0 9 M 60 180 S 0 1 5 0 2 I 0 414 3 0 2 S 1 2 M 75 225 5 0 2 I 0 315 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694861 1696269 390 + . gene_id 3 ; sequence gi|805825627|ref|XP_012152698.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694861 1695248 . + . KQ414915.1 exonerate:protein2genome:local exon 1694861 1695248 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695249 1695250 . + . intron_id 1 ; splice_site "tg" KQ414915.1 exonerate:protein2genome:local intron 1695249 1695666 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1695665 1695666 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695667 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695667 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 1 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696269 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696269 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694861 1696269 390 + . alignment_id 3 ; Query gi|805825627|ref|XP_012152698.1| ; Align 1694861 84 198 ; Align 1695068 150 180 ; Align 1695669 211 225 ; Align 1696213 286 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825627|ref|XP_012152698.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 365 Query range: 139 -> 287 Target range: 1712062 -> 1712651 140 : AspLeuAlaAsnAsnAlaThrAspIlePheLysSerCysIleArgGlnHisGlnAl : 158 !!:!!!|||:!!|||:!! !|||:!!||||||!!!|||:!!||||||||||||:! GluPheAlaAspAsnSerTyrAspValPheLysArgCysValArgGlnHisGlnSe 1712063 : GAATTTGCGGATAACTCTTACGACGTTTTCAAAAGATGCGTTCGTCAACATCAATC : 1712117 159 : aLeuValGluTyrCysGluGluValAspAlaValPheSerProCysValLeuIleG : 177 !|||:!!! !:!||||||::::::::: :::|||||| ! !:!!||| | rLeuMetAlaPheCysGluLysLeuGluGluMetPheSerMetIleIleLeuGlyG 1712118 : TCTGATGGCTTTCTgcgagaaactcgaagaaatgTTCAGTATGATTATACTGGGGC : 1712174 178 : lnValLeuAlaPheSerIlePheIleCysLeuAspGlyTyrGlnMetLeuLeuVal : 195 ||:!!|||!.!||||||||||||!!:|||||||||! !! !|||:!:||||||||| lnLeuLeuValPheSerIlePheMetCysLeuAspValCysGlnValLeuLeuVal 1712175 : AATTGTTAGTGTTCAGTATTTTTATGTGTCTCGACGTGTGCCAAGTACTTCTGGTT : 1712228 196 : AspIlePhe{G} >>>> Target Intron 1 >>>> {lu}ArgGlnIleIl : 203 ..! !.!!{.} 145 bp {..}!:!|||!::|| SerSerIle{S}+- -+{er}LysGlnMetIl 1712229 : AGTTCAATT{A}gc.........................gg{GT}AAACAGAtgat : 1712397 204 : ePheValPheHisPheLeuGlyThrValCysGlnLeuValMetPheSerTyrSerC : 222 ||||...||||||... !||| !:!!|||||||||:!!||||||!!!||||||| ePheThrPheHisLeuAlaGlyCysMetCysGlnLeuLeuMetPheThrTyrSerC 1712398 : tttcacgtttcacctAGCGGGATGTATGTGTCAATTGCTGATGTTTACGTACAGCT : 1712454 223 : ysAspCysIleIleArgGluSerGluLeuLeuAlaThrAlaAlaPheSerGlyPro : 240 ||||||||||||||! !|||||| ! !:!!.!! !|||!.!!:!..!|||||| ysAspCysIleIleThrGluSerLeuAsnValThrGluAlaValTyrAspGlyPro 1712455 : GCGATTGTATAATAACGGAAAGTTTGAACGTGACGGAAGCGGTGTACGATGGACCA : 1712508 241 : TrpLeuGlnLeuProSerSerLysArgIleGluAsnLeuLysLysAspPheIleMe : 259 |||! !!::||||||! !|||! !||| !..!! :!!!:!||||||!!.|||:! TrpProArgLeuProMetSerThrArgGlyArgMetIleArgLysAspLeuIleLe 1712509 : TGGCCACGTTTGCCAATGAGCACGAGAGGAAGAATGATAAGGAAGGATTTGATACT : 1712565 260 : tLeuIleMetArgSerTyrLysSerCysTyrIleSerGlyLeuGlyPhePheIleV : 278 ::!!|||!!:|||||| ! !!|||! !:!:!!!!.! !|||||||||:!!: uValIleIleArgSerArgValProCysCysLeuThrAlaArgGlyPhePheValI 1712566 : CGTTATCATAAGATCGAGAGTACCTTGTTGCTTGACCGCCAGAGGATTCTTCGTAA : 1712622 279 : alSerLeuGluThrSerThrArgValLeu : 287 !!||||||||||||! !|||!:!|||:!! leSerLeuGluThrTyrThrLysValIle 1712623 : TATCTTTGGAAACGTATACGAAGGTAATT : 1712651 vulgar: gi|805825627|ref|XP_012152698.1| 139 287 . KQ414915.1 1712062 1712651 + 365 M 59 177 S 0 1 5 0 2 I 0 141 3 0 2 S 1 2 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712063 1712651 365 + . gene_id 4 ; sequence gi|805825627|ref|XP_012152698.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1712063 1712240 . + . KQ414915.1 exonerate:protein2genome:local exon 1712063 1712240 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712241 1712242 . + . intron_id 1 ; splice_site "GC" KQ414915.1 exonerate:protein2genome:local intron 1712241 1712385 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1712384 1712385 . + . intron_id 0 ; splice_site "GG" KQ414915.1 exonerate:protein2genome:local cds 1712386 1712651 . + . KQ414915.1 exonerate:protein2genome:local exon 1712386 1712651 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712063 1712651 365 + . alignment_id 4 ; Query gi|805825627|ref|XP_012152698.1| ; Align 1712063 140 177 ; Align 1712388 200 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825627|ref|XP_012152698.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 264 Query range: 50 -> 197 Target range: 1688056 -> 1688661 51 : AsnLeuSerArgAsnGluSerAspLysAlaPheProPheArgMetTrpIleLysSe : 69 |||:!!|||||||||:!!||||||!:!!.!.!!||||||!:!||||||:!! .. AsnMetSerArgAsnLysSerAspArgValLeuProPheLysMetTrpVal---As 1688057 : AATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTGGGTC---GA : 1688108 70 : rIleProLeuGlnGluThrProTyrTyrGluIleCysTyrThrValGln >>>> : 86 ! ||||||...!!:|||||||||||||||:!: !:!||| !!||| pTrpProLeuSerAspThrProTyrTyrGluLeuMetPheThrPheGln++ 1688109 : TTGGCCGCTATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAGgt..... : 1688161 87 : Target Intron 1 >>>> AlaValSerValTyrMetValGlyArgThrTyrP : 97 179 bp |||:!!!!!||||||...:!!||| !.!!|||. ++AlaLeuCysValTyrGlnIleGlyAlaAlaTyrI 1688162 : ....................agGCGCTGTGCGTGTATCAAATCGGCGCCGCCTATA : 1688371 98 : heSerLeuAspAsnIleLeuCysIleIleAsnLeuHisLeuAlaGlyGlnPheArg : 115 !!!!!! !|||!...!!!!!|||!!::!:|||:!!|||:!! ! !!||||||||| leCysSerAspThrPhePheCysMetLeuAsnMetHisValIleCysGlnPheArg 1688372 : TCTGCTCCGACACGTTTTTCTGCATGCTGAACATGCACGTGATCTGCCAGTTCCGT : 1688425 116 : MetLeuGlnTyrArgLeuSerGluLysTyrThrLysAsnGlnLysLysAsnAspGl : 134 !!:|||.!.|||||||||! !.!.! !!:: ! ! !||||| IleLeuAsnTyrArgLeuLeuAsnMetTrp------------ProValIleAspGl 1688426 : ATACTAAATTACAGACTGTTGAACATGTGG------------CCGGTCATCGACGA : 1688470 135 : uSerArgAsnLeuLeuAspLeuAlaAsnAsnAlaThrAspIlePheLysSerCysI : 153 | !!! !|||:!! !!!:! !.!!|||!!...! ! !! .!.! !..!|||| uArgThrAsnMetThrGluTyrThrAsnLysCysTyrThrLysLeuIleAspCysI 1688471 : GCGAACGAACATGACCGAATACACGAACAAATGTTACACCAAGCTGATAGATTGCA : 1688527 154 : leArgGlnHisGlnAlaLeuValGluTyrCysGluGluValAspAlaValPheSer : 171 ||!:!.!.||||||:!!|||:!!|||!:!|||! !:!!:!!!!: !|||!:!!!! leLysAsnHisGlnSerLeuIleGluPheCysValLysLeuGluAsnValTyrThr 1688528 : TCAAAAATCATCAGTCGTTGATCGAGTTCTGCGTGAAACTCGAGAACGTGTACACG : 1688581 172 : ProCysValLeuIleGlnValLeuAlaPheSerIlePheIleCysLeuAspGlyTy : 190 ! !:!!||| !!!.:!!:!!!.!||||||:!:!!.!!:|||!!!||| !|| LeuThrIleLeuGlyHisIleValValPheSerLeuLeuMetCysPheAspThrTy 1688582 : TTGACTATACTCGGCCACATAGTGGTCTTCAGCTTGTTGATGTGCTTCGACACGTA : 1688638 191 : rGlnMetLeuLeuValAspIle : 197 |:!!:!::!!||||||! !:!: rGluValValLeuValGlyVal 1688639 : CGAGGTAGTTCTGGTAGGTGTG : 1688661 vulgar: gi|805825627|ref|XP_012152698.1| 50 197 . KQ414915.1 1688056 1688661 + 264 M 17 51 G 1 0 M 17 51 5 0 2 I 0 175 3 0 2 M 40 120 G 4 0 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688057 1688661 264 + . gene_id 5 ; sequence gi|805825627|ref|XP_012152698.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688057 1688158 . + . KQ414915.1 exonerate:protein2genome:local exon 1688057 1688158 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1688159 1688160 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688159 1688337 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1688336 1688337 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1688338 1688661 . + . KQ414915.1 exonerate:protein2genome:local exon 1688338 1688661 . + . insertions 0 ; deletions 4 KQ414915.1 exonerate:protein2genome:local similarity 1688057 1688661 264 + . alignment_id 5 ; Query gi|805825627|ref|XP_012152698.1| ; Align 1688057 51 51 ; Align 1688108 69 51 ; Align 1688338 86 120 ; Align 1688458 130 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825627|ref|XP_012152698.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 242 Query range: 83 -> 202 Target range: 1699629 -> 1699995 84 : ValGlnAlaValSerValTyrMetValGlyArgThrTyrPheSerLeuAspAsnIl : 102 !.!|||!.!:!!|||:!!||| |||||| ! !|||.!!!!!!!!||||||:! AlaGlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLe 1699630 : GCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCT : 1699684 103 : eLeuCysIleIleAsnLeuHisLeuAlaGlyGlnPheArgMetLeuGlnTyrArgL : 121 !||||||:!:!!:||||||||| !||| !|||||||||!!:||||||||||||| uLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgL 1699685 : TTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGT : 1699741 122 : euSerGluLysTyrThrLysAsnGlnLysLys<-><-><->AsnAspGluSerArg : 136 |||||.!. ! ! !! !|||::!|||:!! |||!!:...||| ! euSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAla 1699742 : TATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCA : 1699795 137 : AsnLeuLeuAspLeuAlaAsnAsnAlaThrAspIlePheLysSerCysIleArgGl : 155 !|||! ! !!!!|||.!.|||..! ! ! ||||||!:!|||:!!||||| AlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGl 1699796 : GCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACA : 1699852 156 : nHisGlnAlaLeuValGluTyrCysGluGluValAspAlaValPheSerProCysV : 174 ||||||| !! !:!! !||||||.!...!:!!:!!! !:!!|||!!! ! !| nHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleV 1699853 : ACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTG : 1699909 175 : alLeuIleGlnValLeuAlaPheSerIlePheIleCysLeuAspGlyTyrGlnMet : 192 ||||| !!!.:!!|||!.!||||||:!!.!.|||||||||! !|||!:!|||:!! alLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnVal 1699910 : TACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTG : 1699963 193 : LeuLeuValAspIlePheGluArgGlnIle : 202 |||:!!! !:!!|||.!! !|||||| LeuValGluAsnIleIleThr***GlnIle 1699964 : CTCGTAGAAAACATCATCACCTAGCAAATT : 1699995 vulgar: gi|805825627|ref|XP_012152698.1| 83 202 . KQ414915.1 1699629 1699995 + 242 M 48 144 G 0 9 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699630 1699995 242 + . gene_id 6 ; sequence gi|805825627|ref|XP_012152698.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1699630 1699995 . + . KQ414915.1 exonerate:protein2genome:local exon 1699630 1699995 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699630 1699995 242 + . alignment_id 6 ; Query gi|805825627|ref|XP_012152698.1| ; Align 1699630 84 144 ; Align 1699783 132 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825627|ref|XP_012152698.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 201 Query range: 45 -> 121 Target range: 1711222 -> 1711993 46 : ThrProLeuIleGluAsnLeuSerArgAsnGluSerAspLysAlaPheProPheAr : 64 |||! !:!! !! !|||:!!.!!|||||||||||||||!:! !.!.||||||!: ThrArgValSerValAsnIleGlyArgAsnGluSerAspArgIleLeuProPheLy 1711223 : ACTCGTGTTTCAGTGAATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAA : 1711277 65 : gMetTrpIleLysSerIleProLeuGlnGluThrProTyrTyrGluIleCysTyrT : 83 !||||||||| ..!|||||| !..! !|||||||||:::|||||| :::| sMetTrpIle---AspIleProThrSerMetThrProTyrPheGluIlePhePheT 1711278 : AATGTGGATT---GATATACCGACATCGATGACACcgtattttgaaatattcttca : 1711331 84 : hrValGln >>>> Target Intron 1 >>>> AlaValSerValTyrMetV : 92 ||:!!||| 546 bp !.!:!!|||!.!|||...: hrLeuGln++ ++ValLeuSerAlaTyrGlnI 1711332 : ccTTACAGgt.........................agGTTTTATCCGCGTATCAAA : 1711904 93 : alGlyArgThrTyrPheSerLeuAspAsnIleLeuCysIleIleAsnLeuHisLeu : 110 !!||| !!:!||| !!!!!!!||||||:!!|||||||||!!:|||||||||||| leGlyValSerTyrGlyCysPheAspAsnValLeuCysIleMetAsnLeuHisLeu 1711905 : TTGGCGTGAGTTACGGTTGCTTCGACAACGTTCTATGCATCATGAACCTACACTTG : 1711958 111 : AlaGlyGlnPheArgMetLeuGlnTyrArgLeu : 121 ||| !|||||||||!!:||||||:!!|||||| AlaThrGlnPheArgIleLeuGlnHisArgLeu 1711959 : GCCACTCAGTTTCGAATACTGCAACATAGACTG : 1711993 vulgar: gi|805825627|ref|XP_012152698.1| 45 121 . KQ414915.1 1711222 1711993 + 201 M 22 66 G 1 0 M 17 51 5 0 2 I 0 542 3 0 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711223 1711993 201 + . gene_id 7 ; sequence gi|805825627|ref|XP_012152698.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1711223 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711223 1711339 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1711993 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1711993 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711223 1711993 201 + . alignment_id 7 ; Query gi|805825627|ref|XP_012152698.1| ; Align 1711223 46 66 ; Align 1711289 69 51 ; Align 1711886 86 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825627|ref|XP_012152698.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 49 -> 131 Target range: 1681722 -> 1682088 50 : GluAsnLeuSerArgAsnGluSerAspLysAlaPheProPheArgMetTrpIleLy : 68 ||||||:!!.!!!:!!:!!!:..!!!:!:! !.!!||||||! !.!. ! :!: GluAsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPh 1681723 : gaGAACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTT : 1681777 69 : sSerIleProLeuGlnGluThrProTyrTyrGluIleCysTyrThrValGln >> : 86 !:!:!:||| !... !|||||||||||||||||| :::..!:!!:!! eAsnLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681778 : TAACTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt.. : 1681833 87 : >> Target Intron 1 >>>> AlaValSerValTyrMetValGlyArgThrT : 96 120 bp .!!:!!|||||| !|||! ! !! ++ThrLeuSerValValHisSerGlyIleCysP 1681834 : .......................agACATTATCTGTGGTGCATTCGGGAATTTGTT : 1681981 97 : yrPheSerLeuAspAsnIleLeuCysIleIleAsnLeuHisLeuAlaGlyGlnPhe : 114 :!! !!!!!!!||||||.!!|||||||||:!:!:!:!!|||:!!!.!||||||||| heCysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPhe 1681982 : TCTGTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTT : 1682035 115 : ArgMetLeuGlnTyrArgLeuSerGluLysTyrThrLysAsnGlnLysLys : 131 !:!!!:|||||| !!!:!|||..! ! !! !:!:!!!!.......||| LysIleLeuGlnAsnLysLeuGlnThrValLeuSerGluLysSerSerLys 1682036 : AAGATTTTACAAAACAAACTCCAAACAGTATTGAGTGAGAAatcttcgaaa : 1682088 vulgar: gi|805825627|ref|XP_012152698.1| 49 131 . KQ414915.1 1681722 1682088 + 158 M 36 108 5 0 2 I 0 116 3 0 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681723 1682088 158 + . gene_id 8 ; sequence gi|805825627|ref|XP_012152698.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681723 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681723 1681830 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682088 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682088 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681723 1682088 158 + . alignment_id 8 ; Query gi|805825627|ref|XP_012152698.1| ; Align 1681723 50 108 ; Align 1681951 86 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 643 Query range: 117 -> 375 Target range: 1694346 -> 1696269 118 : PheAlaValAsnIleGlyLysAsnGluSerGluArgValLeuLeuPheHisMetTr : 136 ||| !!.!|||:!!|||||||||:!!|||||||||:!!|||! !|||:!!||||| PheLeuAlaAsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTr 1694347 : TTTTTAGCAAATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTG : 1694401 137 : pLeuAspLeuProLeuSerThrThrProTyrPheGluIleMetTyrValLeuGln : 155 |:!!|||!!!||| !.!! !:!!||||||!:!|||:!!:!:!:!:!!:!!||| pValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGln+ 1694402 : GGTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGg : 1694458 156 : >>>> Target Intron 1 >>>> ValLeuSerLeuTyrGlnCysAspValG : 164 409 bp ..!|||!!!:!!|||!!. !! !:!! + ++ThrLeuCysValTyrHisValGlyIleC 1694459 : t.........................agACACTTTGCGTGTACCATGTCGGTATAT : 1694894 165 : lyTyrIleCysPheAspAsnIlePheCysValMetCysLeuHisSerAlaGlyGln : 182 !!|||!!:|||||||||||||||.!! !!:!!:!! !|||||| !||| !||| ysTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGln 1694895 : GTTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAA : 1694948 183 : PheArgIleLeuGlnTyrArgLeuLysAsnValHisGlnLeuAlaSerLysHisGl : 201 |||||||||||||||||||||!!!! !|||:!! !.!.:!! !..!|||!!. PheArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLysGlnTh 1694949 : TTTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAAC : 1695005 202 : uAspAsnSerAsnAsnSerAlaSerTyr<-><->PheSerTyrLysCysPheValV : 218 !|||..! ... ... ...||| |||!!! ! ! !!!:!:!! rAspGlyArgGluLeuGluIleGlyTyrThrAsnPheThrValAspSerTyrLeuG 1695006 : AGACGGTcgagaattggaaattggtTACACAAATTTCACAGTCGATAGTTACTTAC : 1695062 219 : alPheLysAspCysValArgGlnHisGlnIleIleIleAlaPheCysLysLeuPhe : 236 !!!.|||..!||||||!:! ! |||||| !:!!! !!.!!:!|||||| !!!. lnLeuLysSerCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeu 1695063 : AATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTG : 1695116 237 : GluGluValPheLysValIleValLeuCysGlnValIleMetPheSerMetLeuVa : 255 |||.!.:!!|||..!:!!:!!|||||| ! ||||||:!!.!..!.:!!|||:!!:! GluAsnIlePheSerLeuLeuValLeuGlyGlnValLeuPheLeuAlaMetValLe 1695117 : GAGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTACT : 1695173 256 : lCysLeuValGlyTyrGlnIlePheLeu >>>> Target Intron 2 >>>> : 265 !||||||||||||||||||:!!|||||| 415 bp uCysLeuValGlyTyrGlnLeuPheLeu++ + 1695174 : TTGCCTCGTGGGATATCAGCTATTTCTGgt.........................a : 1695616 266 : ValAspLeuAsnLeuProMetArgValSerLeuThrSerPheIleIleSerAsnL : 283 ..!|||! ! ! ! !!! !.!|||.!!|||..! ! !:!: !.!!!.!| +ThrAspSerProProSerArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrL 1695617 : gACAGACTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTT : 1695672 284 : euCysGlnLeuTrpValPheThrTyrSerCysAspThrMetThrArgGluSerLeu : 301 |||||||||||!:::!!|||||||||||||||||| !:!!||||||||||||:!! euCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGluSerMet 1695673 : TGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATG : 1695726 302 : SerValGlyThrAlaMetTyrGluAlaProTrpProGlnLeuProThrAspLysPh : 320 ..!|||.!!! !|||:!:!:!! ! !|||||| !!.!.||||||! !|||!:! AspValSerArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAspArgAs 1695727 : GACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAA : 1695783 321 : eGlyLysMetIleArgLysAspMetGlnIleValIleMetArgSerLysArgGlyC : 339 !||||||! :!:|||:!!..!|||! !!!:|||||||||||||||!!.||| !!| nGlyLysSerValArgGlnSerMetLeuMetValIleMetArgSerAsnArgCysC 1695784 : TGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTT : 1695840 340 : ysHisIleThrAlaCysGlyPhePheProIleSerLeuGluThrTyrThrLys > : 357 || !:!!|||||| !!||||||||||||:!!|||||||||||||||||| ! ysCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrGly++ 1695841 : GCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGgt. : 1695896 358 : >>> Target Intron 3 >>>> IleMetSerThrAlaMetSerTyrPheThr : 366 319 bp :!!:!:|||||||||||||||||||||||| ++ValLeuSerThrAlaMetSerTyrPheThr 1695897 : ........................agGTCCTCAGCACTGCAATGTCATACTTTACA : 1696240 367 : LeuLeuLysGlySerThrIleAspVal : 375 ||||||!:! !||||||!!:..!:!! LeuLeuArgGlnSerThrMetSerIle 1696241 : CTACTGAGACAATCGACTATGAGCATA : 1696269 vulgar: gi|805825625|ref|XP_012152697.1| 117 375 . KQ414915.1 1694346 1696269 + 643 M 37 111 5 0 2 I 0 405 3 0 2 M 56 168 G 0 6 M 54 162 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694347 1696269 643 + . gene_id 1 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694347 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694347 1694457 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 2 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696269 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696269 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694347 1696269 643 + . alignment_id 1 ; Query gi|805825625|ref|XP_012152697.1| ; Align 1694347 118 111 ; Align 1694867 155 168 ; Align 1695041 211 162 ; Align 1695618 265 276 ; Align 1696213 357 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 609 Query range: 118 -> 369 Target range: 1711231 -> 1713318 119 : AlaValAsnIleGlyLysAsnGluSerGluArgValLeuLeuPheHisMetTrpLe : 137 :!!||||||||||||!:!|||||||||!!:|||:!!|||! !||| ! ||||||:! SerValAsnIleGlyArgAsnGluSerAspArgIleLeuProPheLysMetTrpIl 1711232 : TCAGTGAATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTGGAT : 1711286 138 : uAspLeuProLeuSerThrThrProTyrPheGluIleMetTyrValLeuGln >> : 155 !|||:!!||| !|||! !||||||||||||||||||...:::...|||||| eAspIleProThrSerMetThrProTyrPheGluIlePhePheThrLeuGln++ 1711287 : TGATATACCGACATCGATGACACcgtattttgaaatattcttcaccTTACAGgt.. : 1711342 156 : >> Target Intron 1 >>>> ValLeuSerLeuTyrGlnCysAspValGlyT : 165 546 bp ||||||||| !|||||| !! !|||.!!| ++ValLeuSerAlaTyrGlnIleGlyValSerT 1711343 : .......................agGTTTTATCCGCGTATCAAATTGGCGTGAGTT : 1711916 166 : yrIleCysPheAspAsnIlePheCysValMetCysLeuHisSerAlaGlyGlnPhe : 183 || !||||||||||||:!!.!.|||:!!||| !||||||! !||| !|||||| yrGlyCysPheAspAsnValLeuCysIleMetAsnLeuHisLeuAlaThrGlnPhe 1711917 : ACGGTTGCTTCGACAACGTTCTATGCATCATGAACCTACACTTGGCCACTCAGTTT : 1711970 184 : ArgIleLeuGlnTyrArgLeuLysAsnValHisGlnLeuAlaSerLysHisGlu<- : 202 ||||||||||||:!!|||||| !|||:!!:!! ||| !||||||!!. ! ArgIleLeuGlnHisArgLeuValAsnIleAsnGlyLeuLysSerLysGlnThrPr 1711971 : CGAATACTGCAACATAGACTGGTGAATATAAACGGTCTGAAGAGCAAACAGACACC : 1712027 203 : ><-><-><->AspAsnSerAsnAsnSerAlaSerTyrPheSerTyrLysCysPheV : 217 !!:!..|||! !! ..!:!!!!! ! |||:!! !!!!.! !!:!! oGluLysGlyGluThrSerIleIleAspSerThrGluPheAlaAspAsnSerTyrA 1712028 : GGAGAAAGGTGAAACGTCGATTATAGATTCGACAGAATTTGCGGATAACTCTTACG : 1712084 218 : alValPheLysAspCysValArgGlnHisGlnIleIleIleAlaPheCysLysLeu : 235 !||||||||| |||||||||||||||||| !:!:!!:|||||||||::: spValPheLysArgCysValArgGlnHisGlnSerLeuMetAlaPheCysGluLys 1712085 : ACGTTTTCAAAAGATGCGTTCGTCAACATCAATCTCTGATGGCTTTCTgcgagaaa : 1712138 236 : PheGluGluValPheLysValIleValLeuCysGlnValIleMetPheSerMetLe : 254 ...||||||:::|||!..:!!|||:!!||| ! |||:!!:!!:!!||||||!!:!! LeuGluGluMetPheSerMetIleIleLeuGlyGlnLeuLeuValPheSerIlePh 1712139 : ctcgaagaaatgTTCAGTATGATTATACTGGGGCAATTGTTAGTGTTCAGTATTTT : 1712195 255 : uValCysLeuValGlyTyrGlnIlePheLeu >>>> Target Intron 2 >> : 265 !:!!||||||! !! !! !|||:!!.!!||| 142 bp eMetCysLeuAspValCysGlnValLeuLeu++ 1712196 : TATGTGTCTCGACGTGTGCCAAGTACTTCTGgt....................... : 1712230 266 : >> ValAspLeuAsnLeuProMetArgValSerLeuThrSerPheIleIleSerA : 282 !! ! !::!:!! !! !:!::: ...||| ::! .!! ++ProGlyAlaSerValGlyLysGlnMetIlePheThrPheHisLeuAlaGlyC 1712231 : ..agCCAGGTGCATCTGTGGGTAAACAGAtgattttcacgtttcacctAGCGGGAT : 1712421 283 : snLeuCysGlnLeuTrpValPheThrTyrSerCysAspThrMetThrArgGluSer : 300 !:!!||||||||| !:!!|||||||||||||||||| !!!:! !! !|||||| ysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleThrGluSer 1712422 : GTATGTGTCAATTGCTGATGTTTACGTACAGCTGCGATTGTATAATAACGGAAAGT : 1712475 301 : LeuSerValGlyThrAlaMetTyrGluAlaProTrpProGlnLeuProThrAspLy : 319 |||!:!||| ! !|||:!!|||!!:!.!|||||||||!::||||||! !..!! LeuAsnValThrGluAlaValTyrAspGlyProTrpProArgLeuProMetSerTh 1712476 : TTGAACGTGACGGAAGCGGTGTACGATGGACCATGGCCACGTTTGCCAATGAGCAC : 1712532 320 : sPheGlyLysMetIleArgLysAspMetGlnIleValIleMetArgSerLysArgG : 338 ! |||!:!|||||||||||||||:!! !:!!||||||!!:||||||!:! ! rArgGlyArgMetIleArgLysAspLeuIleLeuValIleIleArgSerArgValP 1712533 : GAGAGGAAGAATGATAAGGAAGGATTTGATACTCGTTATCATAAGATCGAGAGTAC : 1712589 339 : lyCysHisIleThrAlaCysGlyPhePheProIleSerLeuGluThrTyrThrLys : 356 !||| !:!:|||||| ! ||||||||| !|||||||||||||||||||||||| roCysCysLeuThrAlaArgGlyPhePheValIleSerLeuGluThrTyrThrLys 1712590 : CTTGTTGCTTGACCGCCAGAGGATTCTTCGTAATATCTTTGGAAACGTATACGAAG : 1712643 357 : >>>> Target Intron 3 >>>> IleMetSerThrAlaMetSerTyrPhe : 365 634 bp :!!!!:|||||||||:!!||||||||| ++ ++ValIleSerThrAlaValSerTyrPhe 1712644 : gt.........................agGTTATAAGTACAGCAGTGTCGTACTTC : 1713304 366 : ThrLeuLeuLys : 369 |||||||||!:! ThrLeuLeuArg 1713305 : ACACTGTTAAGG : 1713318 vulgar: gi|805825625|ref|XP_012152697.1| 118 369 . KQ414915.1 1711231 1713318 + 609 M 36 108 5 0 2 I 0 542 3 0 2 M 47 141 G 0 12 M 63 189 5 0 2 I 0 138 3 0 2 M 92 276 5 0 2 I 0 630 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711232 1713318 609 + . gene_id 2 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1711232 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711232 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712227 . + . insertions 12 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712228 1712229 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712228 1712369 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1712368 1712369 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1712370 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712370 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713318 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713318 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711232 1713318 609 + . alignment_id 2 ; Query gi|805825625|ref|XP_012152697.1| ; Align 1711232 119 108 ; Align 1711886 155 141 ; Align 1712039 202 189 ; Align 1712370 265 276 ; Align 1713280 357 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 598 Query range: 116 -> 375 Target range: 1706989 -> 1709252 117 : IlePheAlaValAsnIleGlyLysAsnGluSerGluArgValLeuLeuPheHisMe : 135 .!!|||:!!! !!::||||||||||||||||||:!:|||:!!|||:!! !!:!!.! PhePheSerGluSerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPh 1706990 : TTCTTTTCAGAAAgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTT : 1707044 136 : tTrpLeuAspLeuProLeuSerThrThrProTyrPheGluIleMetTyrValLeuG : 154 .|||:!!|||!!!||| !!!!! !|||||||||!:!||||||:!:!:!..!! !| eTrpIleAspPheProThrThrMetThrProTyrTyrGluIleLeuPheThrSerG 1707045 : CTGGATTGACTTTCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGC : 1707101 155 : ln >>>> Target Intron 1 >>>> ValLeuSerLeuTyrGlnCysAspV : 163 || 276 bp |||!!!! !:!! ! ! !: ln++ ++ValPheIleValMetTyrValCysI 1707102 : AGgt.........................agGTTTTTATCGTAATGTACGTTTGCA : 1707404 164 : alGlyTyrIleCysPheAspAsnIlePheCysValMetCysLeuHisSerAlaGly : 181 !!.!!|||:!!|||.!!||||||.!!.!.|||:!!!!: !||||||!!!||| ! leSerTyrLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThr 1707405 : TAAGCTACCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACT : 1707458 182 : GlnPheArgIleLeuGlnTyrArgLeuLysAsnValHisGlnLeuAlaSerLysHi : 200 |||||||||||||||||||||||||||..!|||||| ! |||!:!:!!!. GlnPheArgIleLeuGlnTyrArgLeuSerAsnValCysGly---AlaAsnGluAr 1707459 : CAATTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGT---GCAAACGAACG : 1707512 201 : sGluAspAsnSerAsnAsnSerAlaSerTyrPheSerTyrLysCysPheValValP : 219 !...|||... :::......... !!! ! !||| !!:!!|||!:!!.! !| gSerAspLysIleSerLysLysThrProSerAsnSerAspGluCysTyrAlaLysP 1707513 : TAgcgataaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGT : 1707569 220 : heLysAspCysValArgGlnHisGlnIleIleIleAlaPheCysLysLeuPheGlu : 237 |||||:!!|||:!!!:!||||||||| !:!!|||! !!:!|||!!. !.!!:!! heLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGln 1707570 : TCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAA : 1707623 238 : GluValPheLysValIleValLeuCysGlnValIleMetPheSerMetLeuValCy : 256 ||||||||| :!!.!!||||||...||||||:!::!:||||||:!!|||:!!|| GluValPheGlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCy 1707624 : GAGGTGTTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTG : 1707680 257 : sLeuValGlyTyrGlnIlePheLeu >>>> Target Intron 2 >>>> Va : 265 ||||! !|||||| :!: ! :!! 457 bp ! sLeuAspGlyTyr---LeuValMet++ ++Gl 1707681 : CCTCGATGGATAT---TTGGTGATGgt.........................agGA : 1708161 266 : lAspLeuAsnLeuProMetArgValSerLeuThrSerPheIleIleSerAsnLeuC : 284 !||| ! !:!! !..!|||:!!!!!!!! !! ! !:!!! .!! !|||| uAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuC 1708162 : AGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGT : 1708218 285 : ysGlnLeuTrpValPheThrTyrSerCysAspThrMetThrArgGluSerLeuSer : 302 ||||||||! !:!!|||||||||||||||||| !:!!! !||||||||||||!:! ysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsn 1708219 : GCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAAC : 1708272 303 : ValGlyThrAlaMetTyrGluAlaProTrpProGlnLeuProThrAspLysPheGl : 321 |||!.!!.!|||!!:|||!!:..! !!||| !!!.||||||! !|||!:!! !|| ValAlaAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGl 1708273 : GTGGCCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGG : 1708329 322 : yLysMetIleArgLysAspMetGlnIleValIleMetArgSerLysArgGlyCysH : 340 |::!|||:!:|||||||||:!! !.!!|||||| ||||||!:! ! !||| yArgMetLeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCysC 1708330 : GCGAATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCT : 1708386 341 : isIleThrAlaCysGlyPhePheProIleSerLeuGluThrTyrThrLys >>>> : 357 !:!!|||||||||||||||||||||:!:||||||||||||||||||..! ysLeuThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708387 : GTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt.... : 1708439 358 : Target Intron 3 >>>> IleMetSerThrAlaMetSerTyrPheThrLeu : 367 759 bp |||:!:||||||||| !||||||||||||||| ++IleLeuSerThrAlaAlaSerTyrPheThrLeu 1708440 : .....................agATTTTAAGTACCGCAGCGTCATACTTCACACTG : 1709226 368 : LeuLysGlySerThrIleAspVal : 375 |||::! !..! ! !!!::!! LeuArgLysGlnGluAlaGluIle 1709227 : CTACGAAAACAAGAAGCAGAAATA : 1709252 vulgar: gi|805825625|ref|XP_012152697.1| 116 375 . KQ414915.1 1706989 1709252 + 598 M 38 114 5 0 2 I 0 272 3 0 2 M 41 123 G 1 0 M 64 192 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1706990 1709252 598 + . gene_id 3 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1706990 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1706990 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709252 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709252 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1706990 1709252 598 + . alignment_id 3 ; Query gi|805825625|ref|XP_012152697.1| ; Align 1706990 117 114 ; Align 1707380 155 123 ; Align 1707503 197 192 ; Align 1707695 262 9 ; Align 1708161 265 276 ; Align 1709196 357 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 488 Query range: 153 -> 363 Target range: 1702013 -> 1703256 154 : GlnValLeuSerLeuTyrGlnCysAspValGlyTyrIleCysPheAspAsnIlePh : 172 ||||||||||||||||||!!. !! !||| !!||||||||||||||||||:!!!! GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 173 : eCysValMetCysLeuHisSerAlaGlyGlnPheArgIleLeuGlnTyrArgLeuL : 191 .|||:!!||| !||||||:!!||| !|||||||||||||||||||||||||||. uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 192 : ysAsnValHisGlnLeuAlaSerLysHisGluAspAsnSerAsnAsnSerAla<-> : 209 .!|||:!! !.!. ! !!!!|||!!.! !|||:!!!:!.!.::!|||||| erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1702179 210 : <->SerTyrPheSerTyrLysCysPheValValPheLysAspCysValArgGlnHi : 226 ||| !|||:!! ! !!.|||!:! !!.!||||||:!!|||||||||||||| LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHi 1702180 : CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACA : 1702236 227 : sGlnIleIleIleAlaPheCysLysLeuPheGluGluValPheLysValIleValL : 245 ||||! ! !|||.!!!:!||| ! !!!..!.|||:!!|||! !|||||||||| sGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValL 1702237 : TCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTAC : 1702293 246 : euCysGlnValIleMetPheSerMetLeuValCysLeuValGlyTyrGlnIlePhe : 263 || ! !!.:!!:!!:!:||||||:!:|||:!!||||||||||||!:!|||:!:.!! euGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeu 1702294 : TCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTC : 1702347 264 : LeuValAspLeuAsnLeuProMetArgValSerLeuThr{Se} >>>> Target : 277 :!!||| !!!! ! !|||::: :::...... {||} 6 ValValArgPheValGluProLeuIleIleLysPheHis{Se}-+ 1702348 : GTGGTACGTTTCGTTGAACCTttgattattaaatttcat{ag}tt........... : 1702393 278 : Intron 1 >>>> {r}PheIleIleSerAsnLeuCysGlnLeuTrpValPheT : 290 07 bp {|} !|||:!!.!!!:!||||||||||||! !:!!|||| --{r}HisIleValGlySerLeuCysGlnLeuLeuLeuPheT 1702394 : ..............tt{T}CACATAGTCGGTAGTCTATGCCAACTATTGCTATTTA : 1703035 291 : hrTyrSerCysAspThrMetThrArgGluSerLeuSerValGlyThrAlaMetTyr : 308 |||||||||||||| !:!!! !..!|||||| !!:!:!!|||||||||!!:||| hrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaIleTyr 1703036 : CCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGATATAC : 1703089 309 : GluAlaProTrpProGlnLeuProThrAspLysPheGlyLysMetIleArgLysAs : 327 !.!|||||| !!!.||||||! !|||||| !|||!:!! !:!:|||!:!|| LeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArgArgAs 1703090 : CTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGAAGAGA : 1703146 328 : pMetGlnIleValIleMetArgSerLysArgGlyCysHisIleThrAlaCysGlyP : 346 |:!! !!!:||||||:!:||||||!:!!:!..! !! !:!!|||||| !!|||| pLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSerGlyP 1703147 : CTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAGCGGAT : 1703203 347 : hePheProIleSerLeuGluThrTyrThrLysIleMetSerThrAlaMetSer : 363 ||||||||:!!||||||||||||! !|||! !:!!.!.!:! !:!!.!.||| hePheProValSerLeuGluThrCysThrThrValPheAsnPheSerPheSer 1703204 : TCTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATTTCTCATTCTCT : 1703256 vulgar: gi|805825625|ref|XP_012152697.1| 153 363 . KQ414915.1 1702013 1703256 + 488 M 55 165 G 0 6 M 68 204 S 0 2 5 0 2 I 0 603 3 0 2 S 1 1 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1703256 488 + . gene_id 4 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702014 1702390 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702390 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1702391 1702392 . + . intron_id 1 ; splice_site "tt" KQ414915.1 exonerate:protein2genome:local intron 1702391 1702997 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702996 1702997 . + . intron_id 0 ; splice_site "TT" KQ414915.1 exonerate:protein2genome:local cds 1702998 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1702998 1703256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1703256 488 + . alignment_id 4 ; Query gi|805825625|ref|XP_012152697.1| ; Align 1702014 154 165 ; Align 1702185 209 204 ; Align 1702999 278 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 412 Query range: 110 -> 267 Target range: 1699004 -> 1699980 111 : SerGlnLysGluIleLysIlePheAlaValAsnIleGlyLysAsnGluSerGluAr : 129 !!!!:!|||!!::!: !.!! !...|||||||||:::|||...|||!!:|| ThrArgLysAspValPheTyrIleLeuAlaAsnIleGlyArgAsnSerSerAspAr 1699005 : ACACGGAAGGATGTGTTCTATATTTTAgcaaatattggaagaaaCAGTTCCGATAG : 1699059 130 : gValLeuLeuPheHisMetTrpLeuAspLeuProLeuSerThrThrProTyrPheG : 148 |||||||! !|||:!!||||||:!!|||||||||||||||..!:!!||| !:!| gValLeuProPheAsnMetTrpValAspLeuProLeuSerValSerProThrTyrG 1699060 : AGTGCTCCCATTCAACATGTGGGTTGATTTGCCGCTGTCTGTGTCACCAACGTACG : 1699116 149 : luIleMetTyrValLeuGln >>>> Target Intron 1 >>>> ValLeuS : 157 |||||:!!!:!||||||||| 499 bp ||||||| luIleValPheValLeuGln++ ++ValLeuS 1699117 : AAATAGTGTTCGTGCTTCAGgt.........................agGTTCTGT : 1699642 158 : erLeuTyrGlnCysAspValGlyTyrIleCysPheAspAsnIlePheCysValMet : 175 ||||||||!!. !! !||| !!||||||||||||||||||:!!!!.|||:!!||| erLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLeuCysLeuMet 1699643 : CTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTTGTGTTTGATG : 1699696 176 : CysLeuHisSerAlaGlyGlnPheArgIleLeuGlnTyrArgLeuLysAsnValHi : 194 !||||||:!!||| !|||||||||||||||||||||||||||..!|||:!! AsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnLeuGl 1699697 : AACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTATCGAACTTGGG : 1699753 195 : sGlnLeuAlaSerLysHisGluAspAsnSerAsnAsnSerAla<-><->SerTyrP : 211 !.!. ! !!!!|||!!.! !|||:!!!:!.!.::!|||||| ||| !| yAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAlaLeuSerArgP 1699754 : TGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCTCTGTCTCGTT : 1699810 212 : heSerTyrLysCysPheValValPheLysAspCysValArgGlnHisGlnIleIle : 229 ||:!! ! !!.|||!:! !!.!||||||:!!||||||||||||||||||! ! ! heAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHisGlnAsnHis 1699811 : TCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCAT : 1699864 230 : IleAlaPheCysLysLeuPheGluGluValPheLysValIleValLeuCysGlnVa : 248 |||.!!!:!||| ! !!!..!.|||:!!|||! !|||||||||||| ! !!.:! IleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValLeuGlyHisIl 1699865 : ATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTACTCGGACACAT : 1699921 249 : lIleMetPheSerMetLeuValCysLeuValGlyTyrGlnIlePheLeuValAspL : 267 !:!!:!:||||||:!:|||:!!||||||||||||!:!|||:!:.!!:!!! !:!!: eLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeuValGluAsnI 1699922 : ACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTCGTAGAAAACA : 1699978 268 : eu : 267 !! le 1699979 : TC : 1699980 vulgar: gi|805825625|ref|XP_012152697.1| 110 267 . KQ414915.1 1699004 1699980 + 412 M 44 132 5 0 2 I 0 495 3 0 2 M 54 162 G 0 6 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699005 1699980 412 + . gene_id 5 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1699005 1699136 . + . KQ414915.1 exonerate:protein2genome:local exon 1699005 1699136 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699137 1699138 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699137 1699635 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699634 1699635 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699636 1699980 . + . KQ414915.1 exonerate:protein2genome:local exon 1699636 1699980 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699005 1699980 412 + . alignment_id 5 ; Query gi|805825625|ref|XP_012152697.1| ; Align 1699005 111 132 ; Align 1699636 155 162 ; Align 1699804 209 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 212 Query range: 271 -> 369 Target range: 1689489 -> 1690076 272 : ArgValSerLeuThrSerPheIleIleSerAsnLeuCysGlnLeuTrpValPheTh : 290 |||:!!! !!!! !! ! !!!:|||.!!!:!!!! !!..::: ||||| ArgLeuIlePheLeuPheHisMetIleGlySerPheIleHisIleIlePhePheTh 1689490 : CGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCacataattttcttcac : 1689544 291 : rTyrSerCysAspThrMetThrArgGluSerLeuSerValGlyThrAlaMetTyrG : 309 ||||||||||! ! !:!!! !..!||||||:!!..!:!!!.!||||||! !|||! rTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleAlaThrAlaThrTyrA 1689545 : gtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCAACAGCAACGTATG : 1689601 310 : luAlaProTrpProGlnLeuProThrAspLysPheGlyLysMetIleArgLysAsp : 327 !!.! !||| !! ||||||! !:!!||| !!||||||||||||||| !:!! laGlyMetTrpThrValLeuProMetAsnLysValGlyLysMetIleArgGlyAsn 1689602 : CAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAATGATACGAGGAAAT : 1689655 328 : MetGlnIleValIleMetArgSerLysArgGlyCysHisIleThrAlaCysGlyPh : 346 |||:!!:!!:!!! !:!:|||||| !!:! !||| !||||||||| !!||||| MetLysLeuMetThrValArgSerLeuGlnProCysCysIleThrAlaGlyGlyPh 1689656 : ATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAACTGCTGGTGGATT : 1689712 347 : ePheProIleSerLeuGluThrTyrThrLys >>>> Target Intron 1 >> : 357 |||||||:!!||||||:!!||| !||| ! 293 bp ePheProValSerLeuLysThrAlaThrAla++ 1689713 : CTTTCCTGTCTCCTTGAAAACTGCTACCGCGgt....................... : 1689747 358 : >> IleMetSerThrAlaMetSerTyrPheThrLeuLeuLys : 369 :!!||||||:!!.!!||||||||||||||||||:!!!:! ++LeuMetSerSerThrMetSerTyrPheThrLeuMetArg 1689748 : ..agCTAATGAGTTCCACAATGTCGTATTTCACGCTCATGAGA : 1690076 vulgar: gi|805825625|ref|XP_012152697.1| 271 369 . KQ414915.1 1689489 1690076 + 212 M 85 255 5 0 2 I 0 289 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1689490 1690076 212 + . gene_id 6 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1689490 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689490 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690076 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690076 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1689490 1690076 212 + . alignment_id 6 ; Query gi|805825625|ref|XP_012152697.1| ; Align 1689490 272 255 ; Align 1690038 357 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 196 Query range: 268 -> 375 Target range: 1682550 -> 1683069 269 : LeuProMetArgValSerLeuThrSerPheIleIleSerAsnLeuCysGlnLeuTr : 287 ||| !! |||:!!! !!!! !!:!!:!.!!:!!.!!...:!! |||::::: LeuMetLysArgLeuLeuPheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePh 1682551 : TTGATGAAACGATTGTTGTTCCTAAATTACTTTCTCGGTGGAGTGATacagatatt : 1682605 288 : pValPheThrTyrSerCysAspThrMetThrArgGluSerLeuSerValGlyThrA : 306 ::::...||| !:!|||:!! !!!:! !..!:!!||| !:!!:!!||||||| eLeuIleThrLeuAsnCysAsnAspIleMetGluGlnSerGlyAlaIleGlyThrA 1682606 : tttaataacccTAAATTGCAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAG : 1682662 307 : laMetTyrGluAlaProTrpProGlnLeuProThrAspLysPheGlyLysMetIle : 324 ||!!:|||.....! !||| !::! ::: ||| ..!.!! laIleTyrSerCysAsnTrpGluArgAsnValTyrAsnHisPhe---TyrGlnPhe 1682663 : CGATCTACAGTTGTAATTGGGAGAGGAAtgtttataatcatttt---taccAGTTC : 1682713 325 : ArgLysAspMetGlnIleValIleMetArgSerLysArgGlyCysHisIleThrAl : 343 ||||||||||||..!||||||!!::!:|||:!!|||||| !|||:!!|||:!!|| ArgLysAspMetMetIleValMetValArgAlaLysArgProCysTyrIleSerAl 1682714 : AGAAAGGATATGATGATTGTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGC : 1682770 344 : aCysGlyPhePheProIleSerLeuGluThrTyrThrLys >>>> Target In : 357 |... !|||||||||||||||||||||:!!!:!|||||| 201 aAlaLysPhePheProIleSerLeuGluSerPheThrLys++ 1682771 : AGCGAAATTCTTTCCAATCTCCCTTGAATCGTTCACGAaggt.............. : 1682814 358 : tron 1 >>>> IleMetSerThrAlaMetSerTyrPheThrLeuLeuLysGlyS : 371 bp :!::!:|||.!!.!! ||||||!:!|||||||||::: !! ++ValLeuSerAlaThrAlaSerTyrTyrThrLeuLeuArgThrM 1682815 : ...........agGTGTTAAGTGCAACAGCATCTTATTATACACTGCTGCGTACAA : 1683055 372 : erThrIleAspVal : 375 ! !!!:|||||| etGluMetAspVal 1683056 : TGGAAATGGACGTC : 1683069 vulgar: gi|805825625|ref|XP_012152697.1| 268 375 . KQ414915.1 1682550 1683069 + 196 M 52 156 G 1 0 M 35 105 5 0 2 I 0 197 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682551 1683069 196 + . gene_id 7 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1682551 1682811 . + . KQ414915.1 exonerate:protein2genome:local exon 1682551 1682811 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1682812 1682813 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1682812 1683012 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1683011 1683012 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1683013 1683069 . + . KQ414915.1 exonerate:protein2genome:local exon 1683013 1683069 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1682551 1683069 196 + . alignment_id 7 ; Query gi|805825625|ref|XP_012152697.1| ; Align 1682551 269 156 ; Align 1682707 322 105 ; Align 1683013 357 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 120 -> 204 Target range: 1681725 -> 1682100 121 : AsnIleGlyLysAsnGluSerGluArgValLeuLeuPheHisMetTrpLeu<->As : 138 ||||||||||||!:!!!:..!||||||:!!|||! !|||! .!. ! :!! :! AsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAs 1681726 : AACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAA : 1681780 139 : pLeuProLeuSerThrThrProTyrPheGluIleMetTyrValLeuGln >>>> : 155 !|||||| !||| !|||||||||:::||||||::::::|||:!!:!! nLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681781 : CTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt..... : 1681833 156 : Target Intron 1 >>>> ValLeuSerLeuTyrGlnCysAspValGlyTyrI : 166 120 bp ..!||||||:!! !!.! ! :!! !!!:! ++ThrLeuSerValValHisSerGlyIleCysPheC 1681834 : ....................agACATTATCTGTGGTGCATTCGGGAATTTGTTTCT : 1681984 167 : leCysPheAspAsnIlePheCysValMetCysLeuHisSerAlaGlyGlnPheArg : 184 !||||||||||||.!!.!.|||:!!:!! !!:!!||| !!.!|||||||||!:! ysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLys 1681985 : GTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAG : 1682038 185 : IleLeuGlnTyrArgLeuLysAsnValHisGlnLeuAlaSerLysHisGluAspAs : 203 ||||||||| !!!:!|||:!!!..||| ... ! |||... ||| :: IleLeuGlnAsnLysLeuGlnThrValLeuSerGluLysSerSerLysGluLysSe 1682039 : ATTTTACAAAACAAACTCCAAACAGTATTGAGTGAGAAatcttcgaaagaaaaatc : 1682095 204 : nSer : 204 :::: rAla 1682096 : agct : 1682100 vulgar: gi|805825625|ref|XP_012152697.1| 120 204 . KQ414915.1 1681725 1682100 + 175 M 17 51 G 0 3 M 17 51 5 0 2 I 0 116 3 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681726 1682100 175 + . gene_id 8 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681726 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681726 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682100 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682100 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681726 1682100 175 + . alignment_id 8 ; Query gi|805825625|ref|XP_012152697.1| ; Align 1681726 121 51 ; Align 1681780 138 51 ; Align 1681951 155 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 3 -> 80 Target range: 1697512 -> 1697743 4 : GluTyrThrSerAspIleAlaValArgLeuThrIlePheTyrLeuLysValValGl : 22 ..!:!!|||!.!|||.!!|||:!! !:!!||| |||! :!!|||:!!||||| SerHisThrLysAspPheAlaLeuLeuMetThrSerPheLeuMetLysIleValGl 1697513 : TCGCACACCAAAGATTTTGCTCTGTTAATGACGTCGTTTTTAATGAAGATCGTCGG : 1697567 23 : yPheTrpPheAlaAlaAsnArgLeuGlnGlnLeuPheArgCysLeuThrValIleT : 41 |.!!|||!!.||| !:!!!!! !:!!:!!! ! ||| ! ! !|||:!!|||| yLeuTrpLeuAlaLysAspSerLysGluGluArgLysArgArgTyrThrLeuIleT 1697568 : TCTTTGGTTAGCGAAAGACAGCAAGGAGGAACGCAAGCGTCGGTACACTTTGATCT : 1697624 42 : yrThrIleValMetSerValPheAlaLeuTrpIleGlnSerMetGlyIleTyrTyr : 59 |||||:!:||| !! !:!!|||!.!:!!|||:!:|||! !! ! !.!!|||||| yrThrValValAlaIleLeuPheGlyValTrpValGlnPheArgAspPheTyrTyr 1697625 : ATACGGTGGTCGCGATTTTGTTTGGAGTGTGGGTGCAGTTCAGAGACTTCTATTAC : 1697678 60 : CysTrpGlyAspTyrThrMetCysThrTyrIlePheValAsnIleLeuGlyIleAl : 78 ! !||| !:!!!:! !:!! !! ! ! ! !||| !::!:!!:!!..! ! SerTrpProAsnPheGlyValSerLeuGlnThrPheSerSerValValAsnTyrAr 1697679 : TCCTGGCCGAATTTTGGCGTGAGTTTGCAAACTTTCTCTTCTGTCGTTAATTACCG : 1697735 79 : aIleSer : 80 !! !||| gThrSer 1697736 : AACCTCT : 1697743 vulgar: gi|805825625|ref|XP_012152697.1| 3 80 . KQ414915.1 1697512 1697743 + 138 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1697513 1697743 138 + . gene_id 9 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1697513 1697743 . + . KQ414915.1 exonerate:protein2genome:local exon 1697513 1697743 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1697513 1697743 138 + . alignment_id 9 ; Query gi|805825625|ref|XP_012152697.1| ; Align 1697513 4 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 0 -> 68 Target range: 1700446 -> 1700650 1 : MetGlyMetGluTyrThrSerAspIleAlaValArgLeuThrIlePheTyrLeuLy : 19 ||| ! !:!! ! !.!!!!|||:!!:!!|||!!!:!!||| !||||||||||| MetThrSerLysLysAsnArgAspValSerValSerValThrAlaPheTyrLeuLy 1700447 : ATGACTTCGAAGAAGAACAGGGACGTATCAGTGAGCGTCACAGCTTTCTACTTGAA : 1700501 20 : sValValGlyPheTrpPheAlaAlaAsnArgLeuGlnGlnLeuPheArgCysLeuT : 38 |:!!:!!|||||||||!!.|||! !!.! ! !:!!:!!! ! ||| !!!. sIleIleGlyPheTrpLeuAlaAspThrTyrGluGluLysArgArgArgLysPheA 1700502 : AATCATCGGCTTCTGGTTAGCTGACACTTACGAGGAGAAACGTCGAAGAAAGTTCG : 1700558 39 : hrValIleTyrThrIleValMetSerValPheAlaLeuTrpIleGlnSerMetGly : 56 !! !! !! !||||||:!!||| !:!!! !|||:!! !:!!:!! !! !! ! laGlnAsnCysThrIleLeuMetLeuMetCysAlaValLeuLeuGluValArgAsp 1700559 : CGCAGAATTGCACGATACTTATGCTTATGTGCGCTGTGCTGCTTGAGGTGAGGGAT : 1700612 57 : IleTyrTyrCysTrpGlyAspTyrThrMetCysThr : 68 ||||||:!! !|||||||||!:! !:!: !!||| IleTyrHisIleTrpGlyAspPheGlyValSerThr 1700613 : ATCTATCACATCTGGGGAGATTTCGGCGTAAGTACA : 1700650 vulgar: gi|805825625|ref|XP_012152697.1| 0 68 . KQ414915.1 1700446 1700650 + 115 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1700447 1700650 115 + . gene_id 10 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1700447 1700650 . + . KQ414915.1 exonerate:protein2genome:local exon 1700447 1700650 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1700447 1700650 115 + . alignment_id 10 ; Query gi|805825625|ref|XP_012152697.1| ; Align 1700447 1 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 0 -> 68 Target range: 1704894 -> 1705098 1 : MetGlyMetGluTyrThrSerAspIleAlaValArgLeuThrIlePheTyrLeuLy : 19 ||| ! !:!! ! !.!!!!|||:!!:!!|||!!!:!!||| !||||||||||| MetThrSerLysLysAsnArgAspValSerValSerValThrAlaPheTyrLeuLy 1704895 : ATGACTTCGAAGAAGAACAGGGACGTATCAGTGAGCGTCACAGCTTTCTACTTGAA : 1704949 20 : sValValGlyPheTrpPheAlaAlaAsnArgLeuGlnGlnLeuPheArgCysLeuT : 38 |:!!:!!|||||||||!!.|||! !!.! ! !:!!:!!! ! ||| !!!. sIleIleGlyPheTrpLeuAlaAspThrTyrGluGluLysArgArgArgLysPheA 1704950 : AATCATCGGCTTCTGGTTAGCTGACACTTACGAGGAGAAACGTCGAAGAAAGTTCG : 1705006 39 : hrValIleTyrThrIleValMetSerValPheAlaLeuTrpIleGlnSerMetGly : 56 !! !! !! !||||||:!!||| !:!!! !|||:!! !:!!:!! !! !! ! laGlnAsnCysThrIleLeuMetLeuMetCysAlaValLeuLeuGluValArgAsp 1705007 : CGCAGAATTGCACGATACTTATGCTTATGTGCGCTGTGCTGCTTGAGGTGAGGGAT : 1705060 57 : IleTyrTyrCysTrpGlyAspTyrThrMetCysThr : 68 ||||||:!! !|||||||||!:! !:!: !!||| IleTyrHisIleTrpGlyAspPheGlyValSerThr 1705061 : ATCTATCACATCTGGGGAGATTTCGGCGTAAGTACA : 1705098 vulgar: gi|805825625|ref|XP_012152697.1| 0 68 . KQ414915.1 1704894 1705098 + 115 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1704895 1705098 115 + . gene_id 11 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1704895 1705098 . + . KQ414915.1 exonerate:protein2genome:local exon 1704895 1705098 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1704895 1705098 115 + . alignment_id 11 ; Query gi|805825625|ref|XP_012152697.1| ; Align 1704895 1 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 0 -> 69 Target range: 1680265 -> 1680472 1 : MetGlyMetGluTyrThrSerAspIleAlaValArgLeuThrIlePheTyrLeuLy : 19 |||! !! !!: |||!.! !!.!!:!!:!!||||||||| .!. !:!!|| MetValThrAspThrThrLysTyrPheSerIleArgLeuThrArgIleLeuMetLy 1680266 : ATGGTCACAGACACGACGAAATACTTTTCCATTCGACTCACACGGATACTCATGAA : 1680320 20 : sValValGlyPheTrpPheAlaAlaAsnArgLeuGlnGlnLeuPheArgCysLeuT : 38 |:!!:!!||||||||| !!.! !!..||| !:!!||||||.!. ! ! :!!! sIleIleGlyPheTrpAsnValGlnThrArgArgGluGlnLeuIleLeuArgValA 1680321 : AATCATAGGCTTCTGGAATGTTCAGACAAGAAGGGAACAGCTGATATTGCGAGTCA : 1680377 39 : hrValIleTyrThrIleValMetSerValPheAlaLeuTrpIleGlnSerMetGly : 56 .! !:!:|||! !:!::!!:!: ! ! ! :!!:!! |||:!!! !:!:! ! snTyrLeuTyrMetLeuLeuValLeuSerValSerIleThrIleGluLeuLeuAsp 1680378 : ACTATCTGTACATGTTGCTCGTTCTTTCTGTATCTATAACAATCGAATTGTTAGAT : 1680431 57 : IleTyrTyrCysTrpGlyAspTyrThrMetCysThrTyr : 69 :!!||||||||| !! !|||! !:!!||||||:!! LeuTyrTyrCysArgHisAspLeuTyrValCysThrHis 1680432 : CTTTATTATTGCCGGCATGATTTATATGTGTGTACACAT : 1680472 vulgar: gi|805825625|ref|XP_012152697.1| 0 69 . KQ414915.1 1680265 1680472 + 111 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1680266 1680472 111 + . gene_id 12 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1680266 1680472 . + . KQ414915.1 exonerate:protein2genome:local exon 1680266 1680472 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1680266 1680472 111 + . alignment_id 12 ; Query gi|805825625|ref|XP_012152697.1| ; Align 1680266 1 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825623|ref|XP_012152696.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 680 Query range: 0 -> 330 Target range: 1704894 -> 1709252 1 : MetGluThrLysTyrSerThrAspIleAlaValArgLeuThrPhePheTyrLeuLy : 19 ||| :!!||| ! !:!! !|||:!!:!!|||!!!:!!||| !||||||||||| MetThrSerLysLysAsnArgAspValSerValSerValThrAlaPheTyrLeuLy 1704895 : ATGACTTCGAAGAAGAACAGGGACGTATCAGTGAGCGTCACAGCTTTCTACTTGAA : 1704949 20 : sIleIleGlyPheTrpPheAlaArgSerArgLeuGlnLeuTrpPheArgHisLeuM : 38 ||||||||||||||||!!.||| !!!! ! !:!! ! ! ||| ! !!! sIleIleGlyPheTrpLeuAlaAspThrTyrGluGluLysArgArgArgLysPheA 1704950 : AATCATCGGCTTCTGGTTAGCTGACACTTACGAGGAGAAACGTCGAAGAAAGTTCG : 1705006 39 : etValIleTyrThrPheIleMetAsnMetPheThrMetTrpLeuGlnCysMetGly : 56 ! !! !! !|||.!.:!!||| !|||! !.!!:!! !|||:!! ! !! ! laGlnAsnCysThrIleLeuMetLeuMetCysAlaValLeuLeuGluValArgAsp 1705007 : CGCAGAATTGCACGATACTTATGCTTATGTGCGCTGTGCTGCTTGAGGTGAGGGAT : 1705060 57 : IleTyrHisPheTrpGlyAspPheThrMetCysThrTyr<->IleLeuValAsnVa : 74 |||||||||.!!|||||||||||| !:!: !!||| ! |||:!!! !:!! IleTyrHisIleTrpGlyAspPheGlyValSerThrValSerIleIleGluHisHi 1705061 : ATCTATCACATCTGGGGAGATTTCGGCGTAAGTACAGTTTCAATTATTGAACACCA : 1705117 75 : lSerVal >>>> Target Intron 1 >>>> AsnIleGlyLysAsnGluSe : 83 !||| ! 1876 bp !::||||||||||||||||| sSerArg-+ +-SerIleGlyLysAsnGluSe 1705118 : TTCGAGGat.........................aaAgtattggaaaaaatgaatc : 1707020 84 : rGluArgValLeuLeuPheHisMetTrpLeuAspLeuProValSerMetSerProT : 102 |:!:|||:!!|||:!! !!:!!.!.|||:!!|||!!!|||..!!!!|||!!!|||| rAspArgIleLeuIleValAsnPheTrpIleAspPheProThrThrMetThrProT 1707021 : agACAGGATACTTATAGTCAACTTCTGGATTGACTTTCCGACAACCATGACACCAT : 1707077 103 : yrPheGluIleMetTyrValLeuGln >>>> Target Intron 2 >>>> V : 111 ||!:!||||||:!:!:!..!! !||| 276 bp | yrTyrGluIleLeuPheThrSerGln++ ++V 1707078 : ACTATGAGATATTATTTACGTCGCAGgt.........................agG : 1707380 112 : alLeuSerLeuCysGlnCysAsnIleGlyPheThrCysPheAspAsnIlePheCys : 129 ||!!!! !:!! ! ! !|||.!!!:! !|||.!!||||||.!!.!.||| alPheIleValMetTyrValCysIleSerTyrLeuCysIleAspAsnPheLeuCys 1707381 : TTTTTATCGTAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTCTGTGC : 1707434 130 : IleMetCysLeuHisAlaAlaGlyGlnPheArgIleLeuGlnTyrArgLeuLysAs : 148 !!:!!: !||||||.!!||| !|||||||||||||||||||||||||||..!|| MetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAs 1707435 : ATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAA : 1707491 149 : nMetArgGluMetAlaGlyIleGlnGluAspAsnLeuLysSerAlaSerTyrPheS : 167 |:!! !!! !! ! !...::: |||...... !!! ! !| nValCysGlyAlaAsnGluArgSerAspLysIleSerLysLysThrProSerAsnS 1707492 : TGTGTGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATT : 1707548 168 : erSerLysTyrPheMetValPheLysAsnCysValArgGlnHisGlnMetValIle : 185 ||..!:!!! !!:! !||||||||||||:!!!:!||||||||| :!!||| erAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 1707549 : CGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATA : 1707602 186 : AlaPheCysThrLeuPheGluGluValPheSerAlaIleValLeuCysGlnValIl : 204 ! !!:!|||!.! !.!!:!!|||||||||.!! !.!!||||||...||||||:! GluTyrCysAsnGluLeuGlnGluValPheGlyLeuPheValLeuAlaGlnValLe 1707603 : GAATACTGTAACGAACTTCAAGAGGTGTTCGGTTTATTTGTGCTTGCACAAGTGTT : 1707659 205 : eMetPheSerMetLeuValCysLeuLeuGlyTyrGlnLeuPheLeu >>>> Tar : 220 ::!:||||||:!!|||:!!|||||| !|||||| ||| ! :!! uLeuPheSerLeuLeuMetCysLeuAspGlyTyr---LeuValMet++ 1707660 : GCTCTTCAGTTTGTTAATGTGCCTCGATGGATAT---TTGGTGATGgt........ : 1707706 221 : get Intron 3 >>>> ValAspLeuAsnLeuProMetLeuValSerLeuIleS : 232 457 bp ! !||| ! !:!! !..!! !:!!!!!!!!:!:! ++GluAspThrProIleMetGlnArgLeuThrPheLeuP 1707707 : .................agGAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGT : 1708197 233 : erPheIleSerAlaAsnLeuCysGlnLeuTrpValPheThrTyrSerCysAspThr : 250 ! !:!!!!!!.! !||||||||||||! !:!!|||||||||||||||||| ! heHisLeuThrGlyCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCys 1708198 : TTCACCTAACGGGATGCCTGTGCCAACTGTTGATGTTCACCTACAGCTGCGATTGC : 1708251 251 : MetThrArgGluSerLeuAsnValGlyThrAlaMetTyrThrAlaProTrpLeuGl : 269 :!!! !||||||||||||||||||!.!!.!|||!!:||| !..! !!|||:!!!! LeuIleArgGluSerLeuAsnValAlaAsnAlaIleTyrAspCysSerTrpIleHi 1708252 : CTGATACGAGAAAGCTTGAACGTGGCCAATGCTATATACGACTGCTCGTGGATTCA : 1708308 270 : nLeuProThrAspLysPheGlyLysMetIleArgLysAspLeuGlnIleValIleM : 288 .||||||! !|||!:!! !|||::!|||:!:|||||||||||| !.!!|||||| sLeuProMetAspArgSerGlyArgMetLeuArgLysAspLeuThrPheValIleG 1708309 : CTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGACATTCGTCATTG : 1708365 289 : etArgSerArgArgGlyCysHisIleThrAlaCysGlyPhePheProIleSerLeu : 306 ||||||||| ! !||| !:!!|||||||||||||||||||||:!:|||||| lyArgSerArgValProCysCysLeuThrAlaCysGlyPhePheProValSerLeu 1708366 : GAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTG : 1708419 307 : GluThrTyrThrSer >>>> Target Intron 4 >>>> IleMetSerThr : 315 ||||||||||||||| 759 bp |||:!:|||||| GluThrTyrThrSer++ ++IleLeuSerThr 1708420 : GAAACGTACACTTCGgt.........................agATTTTAAGTACC : 1709205 316 : AlaMetSerTyrPheThrLeuLeuLysGlyThrThrValAspVal : 330 ||| !||||||||||||||||||::! ! ! !!.!!!::!! AlaAlaSerTyrPheThrLeuLeuArgLysGlnGluAlaGluIle 1709206 : GCAGCGTCATACTTCACACTGCTACGAAAACAAGAAGCAGAAATA : 1709252 vulgar: gi|805825623|ref|XP_012152696.1| 0 330 . KQ414915.1 1704894 1709252 + 680 M 69 207 G 0 3 M 7 21 5 0 2 I 0 1872 3 0 2 M 34 102 5 0 2 I 0 272 3 0 2 M 105 315 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1704895 1709252 680 + . gene_id 1 ; sequence gi|805825623|ref|XP_012152696.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1704895 1705125 . + . KQ414915.1 exonerate:protein2genome:local exon 1704895 1705125 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1705126 1705127 . + . intron_id 1 ; splice_site "AT" KQ414915.1 exonerate:protein2genome:local intron 1705126 1707001 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707000 1707001 . + . intron_id 0 ; splice_site "AA" KQ414915.1 exonerate:protein2genome:local cds 1707002 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707002 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709252 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709252 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1704895 1709252 680 + . alignment_id 1 ; Query gi|805825623|ref|XP_012152696.1| ; Align 1704895 1 207 ; Align 1705105 70 21 ; Align 1707002 77 102 ; Align 1707380 111 315 ; Align 1707695 217 9 ; Align 1708161 220 276 ; Align 1709196 312 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825623|ref|XP_012152696.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 611 Query range: 75 -> 330 Target range: 1694352 -> 1696269 76 : ValAsnIleGlyLysAsnGluSerGluArgValLeuLeuPheHisMetTrpLeuAs : 94 !.!|||:!!|||||||||:!!|||||||||:!!|||! !|||:!!||||||:!!|| AlaAsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTrpValAs 1694353 : GCAAATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTGGGTTGA : 1694407 95 : pLeuProValSerMetSerProTyrPheGluIleMetTyrValLeuGln >>>> : 111 |!!!|||..!.!!:!!|||||||||!:!|||:!!:!:!:!:!!:!!||| pPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGln++ 1694408 : CTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGgt..... : 1694460 112 : Target Intron 1 >>>> ValLeuSerLeuCysGlnCysAsnIleGlyPheT : 122 409 bp ..!|||!!!:!!! !!!. !..!||| !!!:!! ++ThrLeuCysValTyrHisValGlyIleCysTyrM 1694461 : ....................agACACTTTGCGTGTACCATGTCGGTATATGTTACA : 1694900 123 : hrCysPheAspAsnIlePheCysIleMetCysLeuHisAlaAlaGlyGlnPheArg : 140 !|||||||||||||||.!! !!:!!:!! !||||||!.!||| !||||||||| etCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGlnPheArg 1694901 : TGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAATTTCGT : 1694954 141 : IleLeuGlnTyrArgLeuLysAsnMetArgGluMetAlaGlyIleGlnGluAspAs : 159 |||||||||||||||!!!! !|||:!!!!!.!.:!: !! !! ||| !|||.. IleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLysGlnThrAspGl 1694955 : ATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAACAGACGG : 1695011 160 : nLeuLys<-><-><->SerAlaSerTyrPheSerSerLysTyrPheMetValPheL : 175 ! ::: ... !!!! !!|||!!! ! ! !!:!:!: !!!.| yArgGluLeuGluIleGlyTyrThrAsnPheThrValAspSerTyrLeuGlnLeuL 1695012 : TcgagaattggaaattggtTACACAAATTTCACAGTCGATAGTTACTTACAATTGA : 1695068 176 : ysAsnCysValArgGlnHisGlnMetValIleAlaPheCysThrLeuPheGluGlu : 193 ||!:!||||||!:! ! |||||| :!!! !!.!!:!|||! ! !!!.|||.!. ysSerCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeuGluAsn 1695069 : AGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTGGAGAAC : 1695122 194 : ValPheSerAlaIleValLeuCysGlnValIleMetPheSerMetLeuValCysLe : 212 :!!|||||| !:!!|||||| ! ||||||:!!.!..!.:!!|||:!!:!!||||| IlePheSerLeuLeuValLeuGlyGlnValLeuPheLeuAlaMetValLeuCysLe 1695123 : ATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTACTTTGCCT : 1695179 213 : uLeuGlyTyrGlnLeuPheLeu >>>> Target Intron 2 >>>> ValAs : 221 |:!!|||||||||||||||||| 415 bp ..!|| uValGlyTyrGlnLeuPheLeu++ ++ThrAs 1695180 : CGTGGGATATCAGCTATTTCTGgt.........................agACAGA : 1695621 222 : pLeuAsnLeuProMetLeuValSerLeuIleSerPheIleSerAlaAsnLeuCysG : 240 |! ! ! ! !!! !|||.!!|||:!! ! !:!::!!!.!!.!||||||| pSerProProSerArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrLeuCysG 1695622 : CTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTTTGTGTC : 1695678 241 : lnLeuTrpValPheThrTyrSerCysAspThrMetThrArgGluSerLeuAsnVal : 258 |||||!:::!!|||||||||||||||||| !:!!||||||||||||:!!:!!||| lnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGluSerMetAspVal 1695679 : AACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATGGACGTT : 1695732 259 : GlyThrAlaMetTyrThrAlaProTrpLeuGlnLeuProThrAspLysPheGlyLy : 277 .!!! !|||:!:!:!.!! !|||||| !.!.||||||! !|||!:! !||||| SerArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAspArgAsnGlyLy 1695733 : AGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAATGGGAA : 1695789 278 : sMetIleArgLysAspLeuGlnIleValIleMetArgSerArgArgGlyCysHisI : 296 |! :!:|||:!!..!:!!! !!!:|||||||||||||||!.!||| !!||| !: sSerValArgGlnSerMetLeuMetValIleMetArgSerAsnArgCysCysCysL 1695790 : AAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTTGCTGCT : 1695846 297 : leThrAlaCysGlyPhePheProIleSerLeuGluThrTyrThrSer >>>> Ta : 312 !!|||||| !!||||||||||||:!!||||||||||||||||||.!! euThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrGly++ 1695847 : TAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGgt....... : 1695896 313 : rget Intron 3 >>>> IleMetSerThrAlaMetSerTyrPheThrLeuLeu : 323 319 bp :!!:!:|||||||||||||||||||||||||||||| ++ValLeuSerThrAlaMetSerTyrPheThrLeuLeu 1695897 : ..................agGTCCTCAGCACTGCAATGTCATACTTTACACTACTG : 1696246 324 : LysGlyThrThrValAspVal : 330 !:! !:!!|||:!!..!:!! ArgGlnSerThrMetSerIle 1696247 : AGACAATCGACTATGAGCATA : 1696269 vulgar: gi|805825623|ref|XP_012152696.1| 75 330 . KQ414915.1 1694352 1696269 + 611 M 35 105 5 0 2 I 0 405 3 0 2 M 51 153 G 0 9 M 58 174 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694353 1696269 611 + . gene_id 2 ; sequence gi|805825623|ref|XP_012152696.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694353 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694353 1694457 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 2 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696269 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696269 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694353 1696269 611 + . alignment_id 2 ; Query gi|805825623|ref|XP_012152696.1| ; Align 1694353 76 105 ; Align 1694867 111 153 ; Align 1695029 162 174 ; Align 1695618 220 276 ; Align 1696213 312 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825623|ref|XP_012152696.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 405 Query range: 109 -> 315 Target range: 1711882 -> 1712657 110 : GlnValLeuSerLeuCysGlnCysAsnIleGlyPheThrCysPheAspAsnIlePh : 128 |||||||||||| !! !||| !..!:!:.!!!:! !||||||||||||:!!.! GlnValLeuSerAlaTyrGlnIleGlyValSerTyrGlyCysPheAspAsnValLe 1711883 : CAGGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGGTTGCTTCGACAACGTTCT : 1711937 129 : eCysIleMetCysLeuHisAlaAlaGlyGlnPheArgIleLeuGlnTyrArgLeuL : 147 .||||||||| !|||||| !||| !||||||||||||||||||:!!|||||| uCysIleMetAsnLeuHisLeuAlaThrGlnPheArgIleLeuGlnHisArgLeuV 1711938 : ATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAATACTGCAACATAGACTGG : 1711994 148 : ysAsnMetArgGluMetAlaGlyIleGln<-><-><-><-><->GluAspAsnLeu : 160 !|||!!:!.!! :!! !.!!! !||| ||| ::::!! alAsnIleAsnGlyLeuLysSerLysGlnThrProGluLysGlyGluThrSerIle 1711995 : TGAATATAAACGGTCTGAAGAGCAAACAGACACCGGAGAAAGGTGAAACGTCGATT : 1712048 161 : LysSerAlaSerTyrPheSerSerLysTyrPheMetValPheLysAsnCysValAr : 179 ! !..!:!!!!! ! |||:!!..!!!.! !!:! |||||||||!..|||||||| IleAspSerThrGluPheAlaAspAsnSerTyrAspValPheLysArgCysValAr 1712049 : ATAGATTCGACAGAATTTGCGGATAACTCTTACGACGTTTTCAAAAGATGCGTTCG : 1712105 180 : gGlnHisGlnMetValIleAlaPheCysThrLeuPheGluGluValPheSerAlaI : 198 |||||||||| :!!!!:||||||||| ...||||||:::|||||| !| gGlnHisGlnSerLeuMetAlaPheCysGluLysLeuGluGluMetPheSerMetI 1712106 : TCAACATCAATCTCTGATGGCTTTCTgcgagaaactcgaagaaatgTTCAGTATGA : 1712162 199 : leValLeuCysGlnValIleMetPheSerMetLeuValCysLeuLeuGlyTyrGln : 216 ||:!!||| ! |||:!!:!!:!!||||||!!:!!!:!!|||||| !! !! !||| leIleLeuGlyGlnLeuLeuValPheSerIlePheMetCysLeuAspValCysGln 1712163 : TTATACTGGGGCAATTGTTAGTGTTCAGTATTTTTATGTGTCTCGACGTGTGCCAA : 1712216 217 : LeuPheLeuValAspLeuAsnLeuProMetLeuValSerLeuIleSerPhe >>> : 234 :!!.!!||||||..!! !! ! ! !!!::!! !!!!!! ! ! ! ! ValLeuLeuValSerSerIleSerLysIleIlePheCys***HisValAla++ 1712217 : GTACTTCTGGTTAGTTCAATTAGCAAAATAATCTTCTGTTGACACGTTGCTgt... : 1712272 235 : > Target Intron 1 >>>> IleSerAlaAsnLeuCysGlnLeuTrpValPh : 244 142 bp ::!:!!!.! !:!!||||||||| !:!!|| +-LeuAlaGlyCysMetCysGlnLeuLeuMetPh 1712273 : ......................acctAGCGGGATGTATGTGTCAATTGCTGATGTT : 1712442 245 : eThrTyrSerCysAspThrMetThrArgGluSerLeuAsnValGlyThrAlaMetT : 263 |||||||||||||||| !!!:! !! !||||||||||||||| ! !|||:!!| eThrTyrSerCysAspCysIleIleThrGluSerLeuAsnValThrGluAlaValT 1712443 : TACGTACAGCTGCGATTGTATAATAACGGAAAGTTTGAACGTGACGGAAGCGGTGT : 1712499 264 : yrThrAlaProTrpLeuGlnLeuProThrAspLysPheGlyLysMetIleArgLys : 281 || !!.!||||||! !!::||||||! !..!! ! |||!:!|||||||||||| yrAspGlyProTrpProArgLeuProMetSerThrArgGlyArgMetIleArgLys 1712500 : ACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGAAGAATGATAAGGAAG : 1712553 282 : AspLeuGlnIleValIleMetArgSerArgArgGlyCysHisIleThrAlaCysGl : 300 |||||| !:!!||||||!!:||||||||| ! !||| !:!:|||||| ! || AspLeuIleLeuValIleIleArgSerArgValProCysCysLeuThrAlaArgGl 1712554 : GATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTGCTTGACCGCCAGAGG : 1712610 301 : yPhePheProIleSerLeuGluThrTyrThrSerIleMetSerThr : 315 ||||||| !|||||||||||||||||||||!.!:!!!!:..!:!! yPhePheValIleSerLeuGluThrTyrThrLysValIleAspSer 1712611 : ATTCTTCGTAATATCTTTGGAAACGTATACGAAGGTAATTGACTCT : 1712657 vulgar: gi|805825623|ref|XP_012152696.1| 109 315 . KQ414915.1 1711882 1712657 + 405 M 47 141 G 0 15 M 77 231 5 0 2 I 0 138 3 0 2 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711883 1712657 405 + . gene_id 3 ; sequence gi|805825623|ref|XP_012152696.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1711883 1712269 . + . KQ414915.1 exonerate:protein2genome:local exon 1711883 1712269 . + . insertions 15 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712270 1712271 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712270 1712411 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1712410 1712411 . + . intron_id 0 ; splice_site "ac" KQ414915.1 exonerate:protein2genome:local cds 1712412 1712657 . + . KQ414915.1 exonerate:protein2genome:local exon 1712412 1712657 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711883 1712657 405 + . alignment_id 3 ; Query gi|805825623|ref|XP_012152696.1| ; Align 1711883 110 141 ; Align 1712039 157 231 ; Align 1712412 234 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825623|ref|XP_012152696.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 330 Query range: 73 -> 222 Target range: 1699025 -> 1699980 74 : ValSerValAsnIleGlyLysAsnGluSerGluArgValLeuLeuPheHisMetTr : 92 :!!! !...|||||||||:::|||...|||!!:|||||||||! !|||:!!||||| IleLeuAlaAsnIleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTr 1699026 : ATTTTAgcaaatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTG : 1699080 93 : pLeuAspLeuProValSerMetSerProTyrPheGluIleMetTyrValLeuGlnV : 111 |:!!|||||||||:!!|||:!!|||||| !:!||||||:!!!:!|||||||||| pValAspLeuProLeuSerValSerProThrTyrGluIleValPheValLeuGlnV 1699081 : GGTTGATTTGCCGCTGTCTGTGTCACCAACGTACGAAATAGTGTTCGTGCTTCAGG : 1699137 112 : alLeuSerLeuCysGlnCysAsnIle{G} >>>> Target Intron 1 >>>> : 120 ||! ! !||| !..!|||!:!.!!{ } 499 bp alArgLeuLeuAsnSerCysSerPhe{C}++ 1699138 : TACGTCTACTCAATTCATGCAGCTTT{T}gt......................... : 1699167 121 : {ly}PheThrCysPheAspAsnIlePheCysIleMetCysLeuHisAlaAlaGl : 137 {!!}!:!! !||||||||||||:!!!!.|||:!:||| !|||||||||||| +-{ys}TyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaTh 1699168 : at{GT}TACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTAC : 1699714 138 : yGlnPheArgIleLeuGlnTyrArgLeuLysAsnMetArgGluMetAlaGlyIleG : 156 !|||||||||||||||||||||||||||..!|||:!! !!!!:! ! ! !!! | rGlnPheArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysG 1699715 : TCAATTTCGTATACTGCAATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGC : 1699771 157 : ln<->GluAspAsnLeuLysSerAla<-><->SerTyrPheSerSerLysTyrPhe : 171 || !!:|||||| !...|||||| ||| !|||:!!..!!!.! !!:! lnValAspAspAsnGluSerSerAlaAlaLeuSerArgPheAlaGluAsnCysTyr 1699772 : AAGTAGATGACAATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTAT : 1699825 172 : MetValPheLysAsnCysValArgGlnHisGlnMetValIleAlaPheCysThrLe : 190 ! !!.!|||||||||||||||||||||||||||! !|||.!!!:!||| ! LysAlaPheLysAsnCysValArgGlnHisGlnAsnHisIleThrTyrCysHisAr 1699826 : AAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCATATCACGTACTGTCACAG : 1699882 191 : uPheGluGluValPheSerAlaIleValLeuCysGlnValIleMetPheSerMetL : 209 !!!..!.|||:!!|||!!!!.!||||||||| ! !!.:!!:!!:!:||||||:!:| gLeuAsnGluIlePheThrValIleValLeuGlyHisIleLeuValPheSerLeuL 1699883 : ATTGAACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGCCTTC : 1699939 210 : euValCysLeuLeuGlyTyrGlnLeuPheLeuValAspLeu : 222 ||:!!||||||:!!|||!:!|||:!!.!!:!!! !:!!:!! euIleCysLeuValGlyPheGlnValLeuValGluAsnIle 1699940 : TGATATGTCTGGTTGGATTCCAAGTGCTCGTAGAAAACATC : 1699980 vulgar: gi|805825623|ref|XP_012152696.1| 73 222 . KQ414915.1 1699025 1699980 + 330 M 46 138 S 0 1 5 0 2 I 0 495 3 0 2 S 1 2 M 36 108 G 0 3 M 7 21 G 0 6 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699026 1699980 330 + . gene_id 4 ; sequence gi|805825623|ref|XP_012152696.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1699026 1699164 . + . KQ414915.1 exonerate:protein2genome:local exon 1699026 1699164 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699165 1699166 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699165 1699663 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699662 1699663 . + . intron_id 0 ; splice_site "AT" KQ414915.1 exonerate:protein2genome:local cds 1699664 1699980 . + . KQ414915.1 exonerate:protein2genome:local exon 1699664 1699980 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699026 1699980 330 + . alignment_id 4 ; Query gi|805825623|ref|XP_012152696.1| ; Align 1699026 74 138 ; Align 1699666 121 108 ; Align 1699777 157 21 ; Align 1699804 164 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825623|ref|XP_012152696.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 264 Query range: 109 -> 232 Target range: 1702013 -> 1702391 110 : GlnValLeuSerLeuCysGlnCysAsnIleGlyPheThrCysPheAspAsnIlePh : 128 |||||||||||||||! !!!. !..!:!! !!!:!! !||||||||||||:!!!! GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 129 : eCysIleMetCysLeuHisAlaAlaGlyGlnPheArgIleLeuGlnTyrArgLeuL : 147 .|||:!:||| !|||||||||||| !|||||||||||||||||||||||||||. uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 148 : ysAsnMetArgGluMetAlaGlyIleGln<->GluAspAsnLeuLysSerAla<-> : 164 .!|||:!! !!!!:! ! ! !!! ||| !!:|||||| !...|||||| erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1702179 165 : <->SerTyrPheSerSerLysTyrPheMetValPheLysAsnCysValArgGlnHi : 181 ||| !|||:!!..!!!.! !!:!! !!.!||||||||||||||||||||||| LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHi 1702180 : CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACA : 1702236 182 : sGlnMetValIleAlaPheCysThrLeuPheGluGluValPheSerAlaIleValL : 200 ||||! !|||.!!!:!||| ! !!!..!.|||:!!|||!!!!.!||||||| sGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValL 1702237 : TCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTAC : 1702293 201 : euCysGlnValIleMetPheSerMetLeuValCysLeuLeuGlyTyrGlnLeuPhe : 218 || ! !!.:!!:!!:!:||||||:!:|||:!!||||||:!!|||!:!|||:!!.!! euGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeu 1702294 : TCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTC : 1702347 219 : LeuValAspLeuAsnLeuProMetLeuValSerLeuIleSer : 232 :!!||| !!!! ! !|||:::::::::...... ||| ValValArgPheValGluProLeuIleIleLysPheHisSer 1702348 : GTGGTACGTTTCGTTGAACCTttgattattaaatttcatagt : 1702391 vulgar: gi|805825623|ref|XP_012152696.1| 109 232 . KQ414915.1 1702013 1702391 + 264 M 47 141 G 0 3 M 7 21 G 0 6 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1702391 264 + . gene_id 5 ; sequence gi|805825623|ref|XP_012152696.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702014 1702391 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702391 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1702391 264 + . alignment_id 5 ; Query gi|805825623|ref|XP_012152696.1| ; Align 1702014 110 141 ; Align 1702158 157 21 ; Align 1702185 164 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825623|ref|XP_012152696.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 254 Query range: 227 -> 318 Target range: 1702983 -> 1703256 228 : ValSerLeuIleSerPheIleSerAlaAsnLeuCysGlnLeuTrpValPheThrTy : 246 :!!!!!!!!:!!! ! !||| !!.!!:!||||||||||||! !:!!|||||||| LeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLeuLeuPheThrTy 1702984 : CTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATTGCTATTTACCTA : 1703038 247 : rSerCysAspThrMetThrArgGluSerLeuAsnValGlyThrAlaMetTyrThrA : 265 |||||||||| !:!!! !..!|||||| !|||:!!|||||||||!!:||| !! rSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaIleTyrLeuG 1703039 : TAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGATATACCTCG : 1703095 266 : laProTrpLeuGlnLeuProThrAspLysPheGlyLysMetIleArgLysAspLeu : 283 .!||||||:!!!!.||||||! !|||||| !|||!:!! !:!:|||!:!|||||| lyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArgArgAspLeu 1703096 : GGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGAAGAGACTTG : 1703149 284 : GlnIleValIleMetArgSerArgArgGlyCysHisIleThrAlaCysGlyPhePh : 302 !!!:||||||:!:|||||||||!:!..! !! !:!!|||||| !!|||||||| ThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSerGlyPhePh 1703150 : ACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAGCGGATTCTT : 1703206 303 : eProIleSerLeuGluThrTyrThrSerIleMetSerThrAlaMetSer : 318 ||||:!!||||||||||||! !|||!!!:!!.!.!:! !:!!.!.||| eProValSerLeuGluThrCysThrThrValPheAsnPheSerPheSer 1703207 : TCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATTTCTCATTCTCT : 1703256 vulgar: gi|805825623|ref|XP_012152696.1| 227 318 . KQ414915.1 1702983 1703256 + 254 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702984 1703256 254 + . gene_id 6 ; sequence gi|805825623|ref|XP_012152696.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702984 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1702984 1703256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702984 1703256 254 + . alignment_id 6 ; Query gi|805825623|ref|XP_012152696.1| ; Align 1702984 228 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825623|ref|XP_012152696.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 210 Query range: 243 -> 324 Target range: 1689540 -> 1690076 244 : PheThrTyrSerCysAspThrMetThrArgGluSerLeuAsnValGlyThrAlaMe : 262 |||||||||||||||! ! !:!!! !..!||||||:!!:!!:!!!.!||||||! PheThrTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleAlaThrAlaTh 1689541 : ttcacgtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCAACAGCAAC : 1689595 263 : tTyrThrAlaProTrpLeuGlnLeuProThrAspLysPheGlyLysMetIleArgL : 281 !|||.!!!.! !||| ! ||||||! !:!!||| !!||||||||||||||| rTyrAlaGlyMetTrpThrValLeuProMetAsnLysValGlyLysMetIleArgG 1689596 : GTATGCAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAATGATACGAG : 1689652 282 : ysAspLeuGlnIleValIleMetArgSerArgArgGlyCysHisIleThrAlaCys : 299 !:!!:!!:!!:!!:!!! !:!:|||||| !!:! !||| !||||||||| !! lyAsnMetLysLeuMetThrValArgSerLeuGlnProCysCysIleThrAlaGly 1689653 : GAAATATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAACTGCTGGT : 1689706 300 : GlyPhePheProIleSerLeuGluThrTyrThrSer >>>> Target Intron : 312 ||||||||||||:!!||||||:!!||| !|||:!! 293 bp GlyPhePheProValSerLeuLysThrAlaThrAla++ 1689707 : GGATTCTTTCCTGTCTCCTTGAAAACTGCTACCGCGgt.................. : 1689747 313 : 1 >>>> IleMetSerThrAlaMetSerTyrPheThrLeuLeuLys : 324 :!!||||||:!!.!!||||||||||||||||||:!!!:! ++LeuMetSerSerThrMetSerTyrPheThrLeuMetArg 1689748 : .......agCTAATGAGTTCCACAATGTCGTATTTCACGCTCATGAGA : 1690076 vulgar: gi|805825623|ref|XP_012152696.1| 243 324 . KQ414915.1 1689540 1690076 + 210 M 68 204 5 0 2 I 0 289 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1689541 1690076 210 + . gene_id 7 ; sequence gi|805825623|ref|XP_012152696.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1689541 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689541 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690076 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690076 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1689541 1690076 210 + . alignment_id 7 ; Query gi|805825623|ref|XP_012152696.1| ; Align 1689541 244 204 ; Align 1690038 312 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825623|ref|XP_012152696.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 229 -> 330 Target range: 1682568 -> 1683069 230 : LeuIleSerPheIleSerAlaAsnLeuCysGlnLeuTrpValPheThrTyrSerCy : 248 !!!:!!!:!!:!.!! !!.!...:!! |||:::::::::...||| !:!|| PheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePheLeuIleThrLeuAsnCy 1682569 : TTCCTAAATTACTTTCTCGGTGGAGTGATacagatatttttaataacccTAAATTG : 1682623 249 : sAspThrMetThrArgGluSerLeuAsnValGlyThrAlaMetTyrThrAlaProT : 267 |:!! !!!:! !..!:!!||| ! !:!!|||||||||!!:|||!:!..! !| sAsnAspIleMetGluGlnSerGlyAlaIleGlyThrAlaIleTyrSerCysAsnT 1682624 : CAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAGCGATCTACAGTTGTAATT : 1682680 268 : rpLeuGlnLeuProThrAspLysPheGlyLysMetIleArgLysAspLeuGlnIle : 285 || !::! ::: ||| ..!.!!|||||||||:!!..!||| rpGluArgAsnValTyrAsnHisPhe---TyrGlnPheArgLysAspMetMetIle 1682681 : GGGAGAGGAAtgtttataatcatttt---taccAGTTCAGAAAGGATATGATGATT : 1682731 286 : ValIleMetArgSerArgArgGlyCysHisIleThrAlaCysGlyPhePheProIl : 304 |||!!::!:|||:!!!:!||| !|||:!!|||:!!|||... !||||||||||| ValMetValArgAlaLysArgProCysTyrIleSerAlaAlaLysPhePheProIl 1682732 : GTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGCAGCGAAATTCTTTCCAAT : 1682788 305 : eSerLeuGluThrTyrThrSer >>>> Target Intron 1 >>>> IleMe : 313 ||||||||||:!!!:!|||!.. 201 bp :!::! eSerLeuGluSerPheThrLys++ ++ValLe 1682789 : CTCCCTTGAATCGTTCACGAaggt.........................agGTGTT : 1683016 314 : tSerThrAlaMetSerTyrPheThrLeuLeuLysGlyThrThrValAspVal : 330 :|||.!!.!! ||||||!:!|||||||||::: !! ! !:!!|||||| uSerAlaThrAlaSerTyrTyrThrLeuLeuArgThrMetGluMetAspVal 1683017 : AAGTGCAACAGCATCTTATTATACACTGCTGCGTACAATGGAAATGGACGTC : 1683069 vulgar: gi|805825623|ref|XP_012152696.1| 229 330 . KQ414915.1 1682568 1683069 + 175 M 46 138 G 1 0 M 35 105 5 0 2 I 0 197 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682569 1683069 175 + . gene_id 8 ; sequence gi|805825623|ref|XP_012152696.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1682569 1682811 . + . KQ414915.1 exonerate:protein2genome:local exon 1682569 1682811 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1682812 1682813 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1682812 1683012 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1683011 1683012 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1683013 1683069 . + . KQ414915.1 exonerate:protein2genome:local exon 1683013 1683069 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1682569 1683069 175 + . alignment_id 8 ; Query gi|805825623|ref|XP_012152696.1| ; Align 1682569 230 138 ; Align 1682707 277 105 ; Align 1683013 312 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825623|ref|XP_012152696.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 71 -> 111 Target range: 1711222 -> 1711342 72 : ValAsnValSerValAsnIleGlyLysAsnGluSerGluArgValLeuLeuPheHi : 90 ..!..!||||||||||||||||||!:!|||||||||!!:|||:!!|||! !||| ! ThrArgValSerValAsnIleGlyArgAsnGluSerAspArgIleLeuProPheLy 1711223 : ACTCGTGTTTCAGTGAATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAA : 1711277 91 : sMetTrpLeuAspLeuProValSerMetSerProTyrPheGluIleMetTyrValL : 109 ||||||:!!|||:!!|||..!||||||!!!|||||||||||||||...:::...| sMetTrpIleAspIleProThrSerMetThrProTyrPheGluIlePhePheThrL 1711278 : AATGTGGATTGATATACCGACATCGATGACACcgtattttgaaatattcttcaccT : 1711334 110 : euGlnVal : 111 |||||||| euGlnVal 1711335 : TACAGGTA : 1711342 vulgar: gi|805825623|ref|XP_012152696.1| 71 111 . KQ414915.1 1711222 1711342 + 149 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711223 1711342 149 + . gene_id 9 ; sequence gi|805825623|ref|XP_012152696.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1711223 1711342 . + . KQ414915.1 exonerate:protein2genome:local exon 1711223 1711342 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711223 1711342 149 + . alignment_id 9 ; Query gi|805825623|ref|XP_012152696.1| ; Align 1711223 72 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825623|ref|XP_012152696.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 0 -> 72 Target range: 1700446 -> 1700662 1 : MetGluThrLysTyrSerThrAspIleAlaValArgLeuThrPhePheTyrLeuLy : 19 ||| :!!||| ! !:!! !|||:!!:!!|||!!!:!!||| !||||||||||| MetThrSerLysLysAsnArgAspValSerValSerValThrAlaPheTyrLeuLy 1700447 : ATGACTTCGAAGAAGAACAGGGACGTATCAGTGAGCGTCACAGCTTTCTACTTGAA : 1700501 20 : sIleIleGlyPheTrpPheAlaArgSerArgLeuGlnLeuTrpPheArgHisLeuM : 38 ||||||||||||||||!!.||| !!!! ! !:!! ! ! ||| ! !!! sIleIleGlyPheTrpLeuAlaAspThrTyrGluGluLysArgArgArgLysPheA 1700502 : AATCATCGGCTTCTGGTTAGCTGACACTTACGAGGAGAAACGTCGAAGAAAGTTCG : 1700558 39 : etValIleTyrThrPheIleMetAsnMetPheThrMetTrpLeuGlnCysMetGly : 56 ! !! !! !|||.!.:!!||| !|||! !.!!:!! !|||:!! ! !! ! laGlnAsnCysThrIleLeuMetLeuMetCysAlaValLeuLeuGluValArgAsp 1700559 : CGCAGAATTGCACGATACTTATGCTTATGTGCGCTGTGCTGCTTGAGGTGAGGGAT : 1700612 57 : IleTyrHisPheTrpGlyAspPheThrMetCysThrTyrIleLeuVal : 72 |||||||||.!!|||||||||||| !:!: !!||| ! !:!!:!! IleTyrHisIleTrpGlyAspPheGlyValSerThrValSerIleIle 1700613 : ATCTATCACATCTGGGGAGATTTCGGCGTAAGTACAGTTTCAATTATT : 1700662 vulgar: gi|805825623|ref|XP_012152696.1| 0 72 . KQ414915.1 1700446 1700662 + 133 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1700447 1700662 133 + . gene_id 10 ; sequence gi|805825623|ref|XP_012152696.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1700447 1700662 . + . KQ414915.1 exonerate:protein2genome:local exon 1700447 1700662 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1700447 1700662 133 + . alignment_id 10 ; Query gi|805825623|ref|XP_012152696.1| ; Align 1700447 1 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825623|ref|XP_012152696.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 106 -> 201 Target range: 1681938 -> 1682229 107 : TyrValLeuGlnValLeuSerLeuCysGlnCysAsnIleGlyPheThrCysPheAs : 125 :::..!||||||..!||||||:!! !!.! ...||| !!||| !|||||||| PheThrLeuGlnThrLeuSerValValHisSerGlyIleCysPheCysCysPheAs 1681939 : ttcaCTTTGCAGACATTATCTGTGGTGCATTCGGGAATTTGTTTCTGTTGTTTCGA : 1681993 126 : pAsnIlePheCysIleMetCysLeuHisAlaAlaGlyGlnPheArgIleLeuGlnT : 144 ||||.!!.!.||||||:!! !!:!!|||!.!!.!|||||||||!:!||||||||| pAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLysIleLeuGlnA 1681994 : CAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAGATTTTACAAA : 1682050 145 : yrArgLeuLysAsnMetArgGluMetAlaGlyIleGlnGluAspAsnLeuLysSer : 162 !!!:!|||:!!!..:!: !... ! ... :::||| ::: ! ! snLysLeuGlnThrValLeuSerGluLysSerSerLysGluLysSerAlaGlyLeu 1682051 : ACAAACTCCAAACAGTATTGAGTGAGAAatcttcgaaagaaaaatcagctGGACTG : 1682104 163 : AlaSerTyrPheSerSer<-><->LysTyrPheMetValPheLysAsnCysValAr : 179 !!.! ! |||!.!..! :!!||| ! :!!.!! ::: |||.. TyrLysGluPheLysGluCysValGlnTyrHisHisLeuLeuLeuSerTyrValGl 1682105 : TATAAAGAGTTCAAGGAGTGCGTACAGTATCATCATTTGCTTCTTTCGtacgtgga : 1682161 180 : gGlnHisGlnMetValIleAlaPheCysThrLeuPheGluGluValPheSerAlaI : 198 .::: ::: |||.!!..! !! !:!!.!!:!! !:!! ! |||::!| uLysLeuGluTyrValPheCysValProLeuMetIleGlnLeuLeuValSerSerI 1682162 : aaaattggaatacgTATTTTGTGTCCCGTTGATGATTCAATTGCTGGTGTCTAGCA : 1682218 199 : leValLeuCys : 201 ||||||||||| leValLeuCys 1682219 : TAGTTCTGTGC : 1682229 vulgar: gi|805825623|ref|XP_012152696.1| 106 201 . KQ414915.1 1681938 1682229 + 116 M 62 186 G 0 6 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681939 1682229 116 + . gene_id 11 ; sequence gi|805825623|ref|XP_012152696.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1681939 1682229 . + . KQ414915.1 exonerate:protein2genome:local exon 1681939 1682229 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681939 1682229 116 + . alignment_id 11 ; Query gi|805825623|ref|XP_012152696.1| ; Align 1681939 107 186 ; Align 1682131 169 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 233 Query range: 128 -> 216 Target range: 1626 -> 1890 129 : ValSerIleSerPheCysAlaPheMetPheValLeuLeuProThrIleProProIleLeuAs : 149 |||!:! ! ! !!|||!.!.!!:!!||||||! ! !|||..!! !|||! !||||||:! ValAsnAlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAs 1627 : GTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGA : 1687 150 : nValValAlaProLeuAsnGluSerArgSerArgGluPheIleTyrProSerTyrTyrPheV : 170 !:!!:!! !||| !||||||||||||..! !! !!:!|||||||||:!!|||||||||. pIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheT 1688 : CATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCA : 1750 171 : alAspGluGlnGlnTyrTyrTyrProIleLeuValHisMetIleSerValAlaValIleLeu : 190 .!||||||!!.:!!||| !! !|||:!!..!|||||| |||||| !:!!:!::!! hrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValVal 1751 : CCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTG : 1810 191 : ThrSerValTyrIleAlaCysAspIleAsnLeuValHisValValHisHisGlyCysAlaLe : 211 !! !||||||.!!|||||||||! !!:!! !:!!:!!||||||!!.|||||||||!.!|| PheTyrValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLe 1811 : TTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATT : 1873 212 : uLeuAlaIleSerGly : 216 |||||||:!:|||||| uLeuAlaValSerGly 1874 : GTTGGCCGTGTCCGGg : 1890 vulgar: gi|350396218|ref|XP_003484482.1| 128 216 . KQ414921.1 1626 1890 + 233 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1627 1890 233 + . gene_id 1 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1627 1890 . + . KQ414921.1 exonerate:protein2genome:local exon 1627 1890 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1627 1890 233 + . alignment_id 1 ; Query gi|350396218|ref|XP_003484482.1| ; Align 1627 129 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819494|ref|XP_012149881.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 226 -> 338 Target range: 807254 -> 807587 227 : ValGlyTyrLeuIleValMetSerIleHisThrAlaAsnGlyProAlaLeuLeuIleL : 246 ..!|||!:!:!!.!!:!!:!::!!:!: !||| !:!!..! !||| !||| ! ThrGlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeu---A 807255 : ACAGGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTG---A : 807309 247 : ysSerValLeuPheTyrIleAlaIleCysLeuGluAlaPheIleTyrCysPheAlaGl : 265 :!||| !!:!!.!. :!:.!!:!: :!!:!! !!:!:!!|||..!!:!||||| rgSerPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGl 807310 : GGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGG : 807366 266 : yGluTyrLeuSerIleLysSerLysLeuIleGlyAspThrAlaTyrGluSerAlaTrp : 284 |.!. |||..! ::!!!!:!! !|||!.!.!..!!||||||!!:||| !||| yAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrp 807367 : CAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGG : 807423 285 : TyrAspLeuArgProSerGluAsnArgLeuLeuIleLeuLeuIleLeuArgSerGlnL : 304 ||| !! !!.! ! !! ! !||| !|||:!!|||:!!|||! !|||.!!.!.. TyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnS 807424 : TACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATT : 807483 305 : ysGlyPheThrPheThrPheGlyLysPheSerSerProSerLeuGluSerPheThrSe : 323 .! !!:! !.!.||| !||||||||| ! !! !!:!||| !!!|||! !.. erProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGl 807484 : CGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGA : 807540 324 : rIleMetLysValSerAlaSerTyrIleSerValLeuLeuAlaMet : 338 !|||:!!|||!.!|||!.!||||||:!:||||||:!! !!.!||| uIleLeuLysAlaSerGlySerTyrLeuSerValMetLysValMet 807541 : GATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: gi|805819494|ref|XP_012149881.1| 226 338 . KQ414940.1 807254 807587 + 156 M 18 54 G 1 0 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807255 807587 156 + . gene_id 1 ; sequence gi|805819494|ref|XP_012149881.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807255 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807255 807587 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807255 807587 156 + . alignment_id 1 ; Query gi|805819494|ref|XP_012149881.1| ; Align 807255 227 54 ; Align 807309 246 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 313 -> 402 Target range: 807314 -> 807581 314 : LeuIleIleLeuPheSerMetThrPheAsnIlePheValValCysTyrIleGlyGluT : 333 !!!:!!:!::!! ! !!!:!! !.!!.!.:!:!:!:!! !..!||| |||.!.| PheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnT 807315 : TTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACA : 807372 334 : hrLeuLysGluGlnCysGluLysValGlyGluValValTyrMetThrAsnTrpTyrTy : 352 |||||:!!..!!:! !|||:!!:!!!.!:!!!.!!.!||| :!! !|||||| hrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrAr 807373 : CACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCG : 807429 353 : rLeuProTyrLysAspIleLeuAsnLeuIleGlnIleIleLeuArgSerSerMetMet : 371 !! !! ! ! ! ! !:!!|||:!! !||||||! !|||.!!!:! ! gCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerPro 807430 : TTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCT : 807486 372 : IleLysIleThrAlaGlyLysLeuValHisMetSerIlePheThrPheGlyAsnValI : 391 !:::|||||||||||||||!!!|||! |||!:!:!!||||||||| !.!.:!!: TyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleL 807487 : TATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATAC : 807546 392 : leLysThrAlaCysAlaTyrPheAsnLeuLeuArg : 402 !:|||.!!:!! !!:!!|||.!.::!:!!:!!!:! euLysAlaSerGlySerTyrLeuSerValMetLys 807547 : TGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: gi|350422514|ref|XP_003493187.1| 313 402 . KQ414940.1 807314 807581 + 137 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807315 807581 137 + . gene_id 1 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807315 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807315 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807315 807581 137 + . alignment_id 1 ; Query gi|350422514|ref|XP_003493187.1| ; Align 807315 314 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 304 -> 389 Target range: 807326 -> 807581 305 : LeuSerGlnMetThrHisLeuLeuPheLeuThrIleMetGlyGlnPheLeuIleAsnS : 324 :!!!!! !:!!! !!!.|||! !.!!! !.!! ! !|||.!. ||| ::: ValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerA 807327 : GTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGC : 807384 325 : erAsnAspGluThrPheGlnAlaIleCysGluAlaLysTrpTyrAsnGlySerSerLy : 343 !!!.!!!:|||! ! |||||| !! !!!::!! ||||||..! !! !.!! ! rgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHi 807385 : GAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCA : 807441 344 : sThrGlnSerLeuTyrLeuLeuValLeuArgLysCysLeuSerProProLysLeuThr : 362 .!! !!! ! !||||||:!!:!!!.!::! ! !|||||| !::::!!||| sAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThr 807442 : CGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACA : 807498 363 : GlyGlyGlyValIleSerLeuAsnLeuGluSerPheValGlnValLeuLysAlaSerP : 382 !.!||| ! !!:!! !!:!!|||||| !!!||| !:!!:!!|||||||||||| AlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerG 807499 : GCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTG : 807558 383 : heSerTyrTyrThrValPheArg : 389 !|||||| :!!|||.!.!:! lySerTyrLeuSerValMetLys 807559 : GCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: gi|350396218|ref|XP_003484482.1| 304 389 . KQ414940.1 807326 807581 + 104 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807327 807581 104 + . gene_id 1 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807327 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807327 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807327 807581 104 + . alignment_id 1 ; Query gi|350396218|ref|XP_003484482.1| ; Align 807327 305 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 297 -> 406 Target range: 807266 -> 807590 298 : PheIleValSerGluTrpAlaGluHisAspValArgAsnLeuAlaSerTyrValMetM : 317 |||:!:|||:!! ! ! .!!:!! !!:!!||| ! ||| !|||!:!|||:!!| PheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuM 807267 : TTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGA : 807324 318 : etPheIleAlaIleCysTyrAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuTh : 336 || :!:.!!:!: !.!.:!:!:!:!!! !..!||| |||.!. !||| et---ValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGl 807325 : TG---GTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGA : 807378 337 : rGluGlnCysLysLysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuPro : 355 !..!!:! !:!!:!!|||!.!:!!!.!!.!||| :!! !|||||| !! !! ! uSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHis 807379 : GTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCAC : 807435 356 : GlyLysThrIleLeuAspLeuIleMetValIleAlaArgSerAsnValValValHisI : 375 ||| ! .!! ! !||||||:!!:!!:!!||| !|||.!!||| ! ! !!.!| GlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgI 807436 : GGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTA : 807495 376 : leThrAlaGlyLysLeuValHisMetSerValTyrThrPheGlySerValValLysTh : 394 ||||||||||||||!!!|||! |||!:!:!!!:!|||||| !..!:!!:!!|||.! leThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAl 807496 : TAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGC : 807552 395 : rGlyPheAlaTyrLeuAsnLeuLeuGlnGlnMetMet : 406 !..! !:!!||||||::!:!!:!!:!! !|||||| aSerGlySerTyrLeuSerValMetLysValMetMet 807553 : TTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATG : 807590 vulgar: gi|350422524|ref|XP_003493190.1| 297 406 . KQ414940.1 807266 807590 + 161 M 20 60 G 1 0 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807267 807590 161 + . gene_id 1 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807267 807590 . + . KQ414940.1 exonerate:protein2genome:local exon 807267 807590 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807267 807590 161 + . alignment_id 1 ; Query gi|350422524|ref|XP_003493190.1| ; Align 807267 298 60 ; Align 807327 319 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819496|ref|XP_003707222.2| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 106 -> 217 Target range: 807257 -> 807587 107 : GlyPheLeuIleValIleAlaPheAsnIleAspAsnGlyLeuProIleLeuIleLysS : 126 ||||||:!!.!!:!!:!!|||.!.!:!! ! :!!..!:!! !! !||| !:!| GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeu---ArgS 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTG---AGGA : 807312 127 : erIleLeuPheTyrValValValTrpLeuAspAlaTyrLeuTyrCysPheAlaGlyGl : 145 ||.!!:!!.!. |||..!:!! !:!!.!. !|||||||||..!!:!||||||.! erPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807313 : GCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 146 : uTyrLeuSerThrLysSerLysLeuIleCysGluThrAlaTyrLysCysLeuTrpTyr : 164 . |||..!:!!::!!!!:!! !|||...:!!.!!|||||| ! ! !||||||||| nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 165 : AspLeuHisProAsnGluSerGlnLeuLeuValLeuProIleLeuArgSerGlnLysG : 184 !! !||| !:!!! !:!!::! !|||:!!||| !|||! !|||.!!.!...! ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 185 : lyLeuLysLeuThrPheGlyLysPheSerSerLeuSerLeuGluSerPheMetSerMe : 203 !! !::::!!||| !||||||||| ! !!:!!!:!||| !!!|||! !..!!! roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 204 : tMetLysAlaSerAlaSerTyrMetSerValLeuLeuAlaMet : 217 ::!!|||||||||!.!||||||:!!||||||:!! !!.!||| eLeuLysAlaSerGlySerTyrLeuSerValMetLysValMet 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: gi|805819496|ref|XP_003707222.2| 106 217 . KQ414940.1 807257 807587 + 171 M 17 51 G 1 0 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807587 171 + . gene_id 1 ; sequence gi|805819496|ref|XP_003707222.2| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807587 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807258 807587 171 + . alignment_id 1 ; Query gi|805819496|ref|XP_003707222.2| ; Align 807258 107 51 ; Align 807309 125 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 135 -> 216 Target range: 32506 -> 32749 136 : PheMetPheValLeuLeuProThrIleProProIleLeuAsnValValAlaProLeuAsn : 155 ||| !:!!.!:!!:!!! ! !:!:||| !|||:!!:!!|||:!!|||||||||||| PheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsn 32507 : TTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAAC : 32564 156 : GluSerArgSerArgGluPheIleTyrProSerTyrTyrPheValAspGluGlnGlnTyr : 175 ||||||||| !!.!! !.!. ||| !!.!! ! ||||||||||||:::|||:::||| GluSerArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyr 32565 : GAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatat : 32624 176 : TyrTyrProIleLeuValHisMetIleSerValAlaValIleLeuThrSerValTyrIle : 195 ::: |||||| !:!!||||||:!!.!!..!!.!..!:!! ! !!!!||| !! PheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThr 32625 : ttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACG : 32684 196 : AlaCysAspIleAsnLeuValHisValValHisHisGlyCysAlaLeuLeuAlaIleSer : 215 ||| ||| ...::: ::! !|||! !|||||| !!!! !||| ! AlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIleLeu 32685 : GCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATTCTC : 32744 216 : Gly : 216 ||| Gly 32745 : GGG : 32749 vulgar: gi|350396218|ref|XP_003484482.1| 135 216 . KQ415081.1 32506 32749 + 153 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32507 32749 153 + . gene_id 1 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32507 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32507 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32507 32749 153 + . alignment_id 1 ; Query gi|350396218|ref|XP_003484482.1| ; Align 32507 136 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 233 Query range: 128 -> 216 Target range: 202 -> 466 129 : ValSerIleSerPheCysAlaPheMetPheValLeuLeuProThrIleProProIleLeuAsnV : 150 |||!:! ! ! !!|||!.!.!!:!!||||||! ! !|||..!! !|||! !||||||:!!: ValAsnAlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspI 203 : GTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACA : 266 151 : alValAlaProLeuAsnGluSerArgSerArgGluPheIleTyrProSerTyrTyrPheValAs : 171 !!:!! !||| !||||||||||||..! !! !!:!|||||||||:!!|||||||||..!|| leLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAs 267 : TTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGA : 329 172 : pGluGlnGlnTyrTyrTyrProIleLeuValHisMetIleSerValAlaValIleLeuThrSer : 192 ||||!!.:!!||| !! !|||:!!..!|||||| |||||| !:!!:!::!! !! ! pGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyr 330 : CGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTAC : 392 193 : ValTyrIleAlaCysAspIleAsnLeuValHisValValHisHisGlyCysAlaLeuLeuAlaI : 214 ||||||.!!|||||||||! !!:!! !:!!:!!||||||!!.|||||||||!.!|||||||||: ValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaV 393 : GTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCG : 458 215 : leSerGly : 216 !:|||||| alSerGly 459 : TGTCCGGg : 466 vulgar: gi|350396218|ref|XP_003484482.1| 128 216 . LHQN01023902.1 202 466 + 233 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 203 466 233 + . gene_id 1 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 203 466 . + . LHQN01023902.1 exonerate:protein2genome:local exon 203 466 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 203 466 233 + . alignment_id 1 ; Query gi|350396218|ref|XP_003484482.1| ; Align 203 129 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 272 Query range: 116 -> 216 Target range: 4942 -> 5242 117 : SerLysLysAlaThrPheLeuSerCysLeuTyrGlnValSerIleSerPheCysAlaPheMe : 137 ..!:::... !:!!|||! !! ! !!! ! !||| !||||||!!.|||||| !:! GluArgSerLeuSerPheTyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLe 4943 : GAACGTTCTCTGTCATTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCT : 5003 138 : tPheValLeuLeuProThrIleProProIleLeuAsnValValAlaProLeuAsnGluSerA : 158 :|||:!!! !|||||| !:!: !!|||||||||:!!:!!:!! !||||||||||||!!!| uPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrA 5004 : ATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGC : 5066 159 : rgSerArgGluPheIleTyrProSerTyrTyrPheValAspGluGlnGlnTyrTyrTyrPro : 178 ||:!!||| !|||:!!||||||:!!||||||||||||||||||.!.:!!|||:!!||| ! rgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeu 5067 : GAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTG : 5126 179 : IleLeuValHisMetIleSerValAlaValIleLeuThrSerValTyrIleAlaCysAspIl : 199 |||:!!! !|||||| ! !|||!.!|||!!:|||! !||||||!:! !||||||||| IleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAl 5127 : ATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGC : 5189 200 : eAsnLeuValHisValValHisHisGlyCysAlaLeuLeuAlaIleSerGly : 216 !|||! !|||:!!!.!|||!!.|||!.!|||!.!||||||||||||:!!||| aAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5190 : CAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5242 vulgar: gi|350396218|ref|XP_003484482.1| 116 216 . LHQN01025741.1 4942 5242 + 272 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4943 5242 272 + . gene_id 1 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4943 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4943 5242 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4943 5242 272 + . alignment_id 1 ; Query gi|350396218|ref|XP_003484482.1| ; Align 4943 117 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 245 Query range: 288 -> 377 Target range: 2292 -> 2692 289 : SerThrMetGluIleGlyValArgTyrPheThrPheCysAlaPheThrLeuSerGlnMetTh : 309 |||! !|||!!: ! !!:!!..!!:!!:!! !!:!|||!.!||| !:!! !|||:!!.. SerMetMetAspProCysMetGluPheTyrLysTyrCysGlyPheLeuValValGlnLeuVa 2293 : TCCATGATGGACCCTTGCATGGAGTTCTACAAGTATTGCGGTTTCTTGGTGGTGCAACTGGT : 2353 310 : rHisLeuLeuPheLeuThrIleMetGlyGlnPheLeuIleAsnSerAsnAspGluThrPheG : 330 !|||||||||||||||:!!|||..!|||!!.|||:!!||| !|||:!!||| !|||!:!. lHisLeuLeuPheLeuSerIleGlnGlyHisPheIleIleLeuSerHisAspMetThrTyrA 2354 : TCATTTGCTTTTCCTTTCTATCCAGGGACACTTTATTATACTCTCGCATGACATGACTTACG : 2416 331 : lnAla{Il} >>>> Target Intron 1 >>>> {e}CysGluAlaLysTrpTyrAsn : 339 !. !{||} 133 bp {|}! !...||||||||||||||| spAsn{Il}++ ++{e}TyrSerAlaLysTrpTyrAsn 2417 : ACAAC{AT}gt.........................ag{A}TATAGCGCAAAATGGTACAAC : 2576 340 : GlySerSerLysThrGlnSerLeuTyrLeuLeuValLeuArgLysCysLeuSerProProLy : 360 .!!||| !!!:!||||||!!!||||||:!!|||!.!||||||!:! !!|||!!!|||||| SerSerProArgThrGlnThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLe 2577 : AGTTCGCCGAGAACGCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATT : 2639 361 : sLeuThrGlyGlyGlyValIleSerLeuAsnLeuGluSerPheValGlnVal : 377 !||||||!.!||||||:!!||||||||||||||||||!!!|||!.!:!!||| uLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGluVal 2640 : GCTCACTGCGGGAGGACTGATTTCCTTGAATTTGGAGACTTTTGCCGAGGTA : 2692 vulgar: gi|350396218|ref|XP_003484482.1| 288 377 . LHQN01025741.1 2292 2692 + 245 M 43 129 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 2293 2692 245 + . gene_id 2 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 2293 2423 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2293 2423 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 2424 2425 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 2424 2556 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 2555 2556 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 2557 2692 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2557 2692 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 2293 2692 245 + . alignment_id 2 ; Query gi|350396218|ref|XP_003484482.1| ; Align 2293 289 129 ; Align 2558 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 214 Query range: 123 -> 216 Target range: 1552 -> 1831 124 : SerCysLeuTyrGlnValSerIleSerPheCysAlaPheMetPheValLeuLeuProThrIl : 144 ||| ! !!:! !|||!:! ! !|||||| ! !!!!:|||..!! !:!! !!! !! SerLeuTyrPheThrValAsnGlyLeuPheCysTyrValIlePheThrSerValAlaIleTh 1553 : TCTCTGTATTTCACAGTAAACGGACTGTTTTGCTACGTTATATTCACCTCAGTGGCGATTAC : 1613 145 : eProProIleLeuAsnValValAlaProLeuAsnGluSerArgSerArgGluPheIleTyrP : 165 |||! !:!!|||:!!:!!:!!:!!||| !||||||||||||.!! !!!:|||||||||| rProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValAspPheIleTyrP 1614 : GCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTCATTTATC : 1676 166 : roSerTyrTyrPheValAspGluGlnGlnTyrTyrTyrProIleLeuValHisMetIleSer : 185 ||:!!|||||| !:!!||||||:!!:!!:!!|||||| !:!::!!! !||||||:!!!!! roAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHisMetLeuCys 1677 : CTGCATACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCACATGCTCTGC : 1736 186 : ValAlaValIleLeuThrSerValTyrIleAlaCysAspIleAsnLeuValHisValValHi : 206 ||| !..!:!!:!! !! !|||||||||:!!||||||! ! !! !:!!:!!:!!|||!! ValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMetAsnIleValGl 1737 : GTGATAACTGTAGTGTTTTTCGTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCA : 1799 207 : sHisGlyCysAlaLeuLeuAlaIleSerGly : 216 .|||!.!|||!.!|||||| !:!!|||||| nHisAlaCysGlyLeuLeuAsnValSerGly 1800 : ACACGCGTGCGGATTACTGAACGTCTCTGGG : 1831 vulgar: gi|350396218|ref|XP_003484482.1| 123 216 . LHQN01025741.1 1552 1831 + 214 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1553 1831 214 + . gene_id 3 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1553 1831 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1553 1831 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1553 1831 214 + . alignment_id 3 ; Query gi|350396218|ref|XP_003484482.1| ; Align 1553 124 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 192 Query range: 117 -> 233 Target range: 11438 -> 11786 118 : LysLysAlaThrPheLeuSerCysLeuTyrGlnValSerIleSerPheCysAlaPheMet : 137 |||::: !.!! !|||..!!! !!:!! !|||!:! ! !.!!|||:!!|||:!! LysGlnLeuAlaThrLeuAspTrpThrPheProValAsnAlaTyrIleCysSerPheLeu 11439 : aaacaattAGCAACTCTCGATTGGACATTTCCAGTGAACGCGTACATTTGCTCGTTCTTG : 11496 138 : PheValLeuLeuProThrIleProProIleLeuAsnValValAlaProLeuAsnGluSer : 157 |||:!!! !:!!||| !! !!! !:!::!!||| ! ! ! !!! !||| !!!! PheIleGlnValProTrpThrThrArgLeuValAsnSerTyrLysThrGlnAsnIleThr 11497 : TTCATACAAGTGCCATGGACGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACG : 11556 158 : ArgSerArgGluPheIleTyrProSerTyrTyrPheValAspGluGlnGlnTyrTyrTyr : 177 ! !||| !:!!|||:!! |||.!!|||||||||||||||||| !:!!||||||||| ProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyrTyr 11557 : CCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTAT : 11616 178 : ProIleLeuValHisMetIleSerValAlaValIleLeuThrSerValTyrIleAlaCys : 197 !|||:!!:!!||| ! !!!..!!.!:!!|||:!!..! !|||||| !|||||| TyrIleIleLeuHisGlyThrCysThrValLeuIleValValValValTyrCysAlaCys 11617 : TACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 11676 198 : AspIleAsnLeuValHisValValHisHisGlyCysAlaLeuLeuAlaIleSerGlyTyr : 217 |||! !!:!! !:!! :!!|||!!.||| !|||!.!|||!!!|||:!::!!|||! AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly*** 11677 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGGTGA : 11736 218 : ArgPheLysHisAlaMetAspAsnValSerPheSerAsnGluLysTyr : 233 ..! ! !... :::|||||||||:::! !!!.||| GluAsnLeuArgAspThrPhePheLeuSerPheSerSerGlyAsnTyr 11737 : GAAAACTTGAGagatacattttttctctcattttcgtCGGGAAATTAT : 11786 vulgar: gi|350396218|ref|XP_003484482.1| 117 233 . LHQN01025741.1 11438 11786 + 192 M 116 348 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11439 11786 192 + . gene_id 4 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11439 11786 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11439 11786 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11439 11786 192 + . alignment_id 4 ; Query gi|350396218|ref|XP_003484482.1| ; Align 11439 118 348 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 333 -> 377 Target range: 6190 -> 6322 334 : GluAlaLysTrpTyrAsnGlySerSerLysThrGlnSerLeuTyrLeuLeuValLeuArgLy : 354 |||:!!! !|||||||||..!|||!!!|||||||||:!!||||||:!!|||!.!||||||!. GluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeuArgSe 6191 : GAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTACGGAG : 6251 355 : sCysLeuSerProProLysLeuThrGlyGlyGlyValIleSerLeuAsnLeuGluSerPheV : 375 . !!|||!:!|||||| !||||||!.!|||||| !!|||!!!|||||||||:!!!!!||| rSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLysThrPheS 6252 : TAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAGACCTTCT : 6314 376 : alGlnVal : 377 !:!!||| erGluVal 6315 : CAGAGGTA : 6322 vulgar: gi|350396218|ref|XP_003484482.1| 333 377 . LHQN01025741.1 6190 6322 + 141 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 6191 6322 141 + . gene_id 5 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 6191 6322 . + . LHQN01025741.1 exonerate:protein2genome:local exon 6191 6322 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 6191 6322 141 + . alignment_id 5 ; Query gi|350396218|ref|XP_003484482.1| ; Align 6191 334 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 134 -> 183 Target range: 8907 -> 9054 135 : AlaPheMetPheValLeuLeuProThrIleProProIleLeuAsnValValAlaProLeuAs : 155 ||| !!!:|||:!!! !:!!||| ! !||| !||||||:!!:!! !||||||||||| AlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAspIleCysAlaProLeuAs 8908 : GCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTGCGCGCCACTGAA : 8968 156 : nGluSerArgSerArgGluPheIleTyrProSerTyrTyrPheValAspGluGlnGlnTyrT : 176 |:!!!!!|||!.!|||! !|||:!!||||||:!!||||||!:::!!||| :!!||||||| nLysThrArgLysArgAlaPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrT 8969 : CAAAACGAGAAAACGTGCGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACT : 9031 177 : yrTyrProIleLeuValHisMet : 183 || !!!::!!:!!|||!!: yrMetIleMetIleIleHisIle 9032 : ACATGATAATGATAATACACATA : 9054 vulgar: gi|350396218|ref|XP_003484482.1| 134 183 . LHQN01025741.1 8907 9054 + 138 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 8908 9054 138 + . gene_id 6 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 8908 9054 . + . LHQN01025741.1 exonerate:protein2genome:local exon 8908 9054 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 8908 9054 138 + . alignment_id 6 ; Query gi|350396218|ref|XP_003484482.1| ; Align 8908 135 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 323 -> 377 Target range: 12775 -> 12937 324 : SerAsnAspGluThrPheGlnAlaIleCysGluAlaLysTrpTyrAsnGlySerSerLys : 343 !!!..!|||!!:!.! :!!! !! !|||:!! !||||||!...!!||||||||| ThrArgAspAspAsnGluThrSerArgTyrGluSerLeuTrpTyrThrSerSerSerLys 12776 : ACACGCGATGATAATGAAACTTCCAGATACGAATCATTATGGTACACAAGTTCTTCGAAA : 12833 344 : ThrGlnSerLeuTyrLeuLeuValLeuArgLysCysLeuSerProProLysLeuThrGly : 363 ||||||:!!||||||:!!:!!!.!||||||!:! !|||!!!||| !! ||||||!.! ThrGlnAlaLeuTyrValValAlaLeuArgArgAsnLeuThrProThrCysLeuThrAla 12834 : ACACAAGCATTATACGTGGTAGCGTTACGAAGAAACCTAACACCTACCTGTTTAACGGCT : 12893 364 : GlyGlyValIleSerLeuAsnLeuGluSerPheValGlnVal : 377 ||||||:!!:!:..!||||||:!!! !||||||:!!:!!||| GlyGlyLeuValGlnLeuAsnMetAlaSerPheLeuGluVal 12894 : GGCGGTTTAGTGCAACTGAACATGGCAAGTTTCTTGGAGGTA : 12937 vulgar: gi|350396218|ref|XP_003484482.1| 323 377 . LHQN01025741.1 12775 12937 + 129 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 12776 12937 129 + . gene_id 7 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 12776 12937 . + . LHQN01025741.1 exonerate:protein2genome:local exon 12776 12937 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 12776 12937 129 + . alignment_id 7 ; Query gi|350396218|ref|XP_003484482.1| ; Align 12776 324 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 0 -> 54 Target range: 4356 -> 4518 1 : MetAspTrpGlnThrIleGluAspGlnCysLeuLysAlaAsnLysPhePheGlyGlnLeuVa : 21 |||||| ! |||:!!||| ! !::! !|||!:! !|||||| .!!|||..!|||.. MetAspAlaIleThrLeuGluLysArgTyrLeuArgIleAsnLysLysLeuGlyMetLeuTh 4357 : ATGGATGCGATCACGTTAGAGAAACGTTACTTGAGAATCAACAAGAAGCTCGGCATGCTAAC : 4417 22 : lGlyValTrpProAsnGlnGluLysPheThrLysIleIleIleArgPheValIlePheIleI : 42 !|||||||||||| !!|||:!!!..! !!||| |||! !||| |||:!:.!!.!!: rGlyValTrpProTyrGlnLysSerSerProLysTrpIleSerArgThrValValLeuPheV 4418 : CGGTGTGTGGCCCTATCAAAAGAGCTCGCCAAAATGGATCAGTCGAACGGTAGTGCTCTTTG : 4480 43 : leIleIleThrThrIleThrAlaGlnIleSerArgVal : 54 !:|||||| !! ! !..!.!!|||:!!..!!:!:!! alIleIleProCysTyrValThrGlnValGluLysIle 4481 : TGATAATACCTTGTTATGTTACACAGGTAGAAAAAATA : 4518 vulgar: gi|350396218|ref|XP_003484482.1| 0 54 . LHQN01025741.1 4356 4518 + 102 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4357 4518 102 + . gene_id 8 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4357 4518 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4357 4518 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4357 4518 102 + . alignment_id 8 ; Query gi|350396218|ref|XP_003484482.1| ; Align 4357 1 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350399566|ref|XP_003485570.1| PREDICTED: uncharacterized protein LOC100741772 [Bombus impatiens] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 105 -> 191 Target range: 4999 -> 5254 106 : GlyLeuPheLeuLeuValProLeuIleSerProIleLeuAspIleValHisProIleAsnGl : 126 !.!||||||:!!! !:!!|||!!!:!:||||||||||||||||||:!! |||:!:|||! AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGl 5000 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGA : 5060 127 : yThrArgThrArgGlnGlnLeuLeuArgValAsnTyrIlePhePheAspAspAspAspTyrP : 147 !||||||.!!||| !!!!:!! ! ! !||| !||| !!|||!!:||| ! ||| uThrArgAlaArg---LeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrH 5061 : GACGCGAGCACGG---TTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATC : 5120 148 : hePheTyrIleTyrLeuGlnLeuPheCysGlyAlaAlaValValValTyrThrIleIleGly : 167 !!:!! ||| !!!.:!!!:! !! !!.!!.!:!!:!!:!!! !..!.!! !!.! isTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 5121 : ATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 5180 168 : AlaAspTrpLeuTyrMetLeuIleIleHisHisSerSerGlyLeuPheAlaValCysGlyHi : 188 ..!||| !|||:!!! ! !:!:!!.|||:!!!!!||||||!!.|||:!!...||| ! CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly** 5181 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTA : 5243 189 : sArgValGln : 191 !|||||| *LeuValGln 5244 : ATTAGTTCAA : 5254 vulgar: gi|350399566|ref|XP_003485570.1| 105 191 . LHQN01025741.1 4999 5254 + 130 M 25 75 G 1 0 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5000 5254 130 + . gene_id 1 ; sequence gi|350399566|ref|XP_003485570.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5000 5254 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5000 5254 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 5000 5254 130 + . alignment_id 1 ; Query gi|350399566|ref|XP_003485570.1| ; Align 5000 106 75 ; Align 5075 132 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 181 Query range: 117 -> 233 Target range: 1284 -> 936 118 : LysLysAlaThrPheLeuSerCysLeuTyrGlnValSerIleSerPheCysAlaPheMetPh : 138 |||::: !.!! !|||..!!! !!:!! !|||!:! ! !.!!|||:!!|||:!!|| LysGlnLeuAlaThrLeuAspTrpThrPheProValAsnAlaTyrIleCysSerPheLeuPh 1284 : aaacaattAGCAACTCTGGATTGGACATTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTT : 1224 139 : eValLeuLeuProThrIleProProIleLeuAsnValValAlaProLeuAsnGluSerArgS : 159 |:!!! !:!!||| !! !!! !!!::!!||| ! ! ! !!! !||| !!!!! !| eIleGlnValProTrpThrThrArgMetValAsnSerTyrLysThrGlnAsnIleThrProS 1223 : CATACAAGTGCCATGGACGACCCGAATGGTGAACTCGTACAAGACACAGAATATAACGCCAA : 1161 160 : erArgGluPheIleTyrProSerTyrTyrPheValAspGluGlnGlnTyrTyrTyrProIle : 179 || ! ! !!:!! |||.!!|||||||||||||||||| !:!!||||||||| !||| erLeuProValValValProGlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIle 1160 : GTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATC : 1101 180 : LeuValHisMetIleSerValAlaValIleLeuThrSerValTyrIleAlaCysAspIleAs : 200 :!!:!!||| ! !!!..!!.!:!!|||:!!..! !|||||| !|||||||||! !!: IleLeuHisGlyThrCysThrValLeuIleValValValValTyrCysAlaCysAspThrSe 1100 : ATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAG : 1038 201 : nLeuValHisValValHisHisGlyCysAlaLeuLeuAlaIleSerGlyTyrArgPheLysH : 221 !! !:!! :!!|||!!.||| !|||!.!|||!!!|||:!::!!|||! ..! ! !. rTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly***GluAsnLeuA 1037 : TTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGGTGAGAAAACTTGA : 975 222 : isAlaMetAspAsnValSerPheSerAsnGluLysTyr : 233 .. :::|||||||||:::! !!!.||| rgAspThrPhePheLeuSerPheSerSerGlyAsnTyr 974 : GagatacattttttctctcattttcgtCGGGAAACTAT : 937 vulgar: gi|350396218|ref|XP_003484482.1| 117 233 . LHQN01027734.1 1284 936 - 181 M 116 348 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 937 1284 181 - . gene_id 1 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 937 1284 . - . LHQN01027734.1 exonerate:protein2genome:local exon 937 1284 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 937 1284 181 - . alignment_id 1 ; Query gi|350396218|ref|XP_003484482.1| ; Align 1285 118 348 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 450 Query range: 267 -> 405 Target range: 5518 -> 4088 268 : AsnPheIleSerTyrIleGluGlyValMetAsnLysIleCysPheLeuGluMetLeuArgCy : 288 !:!||||||||| !:!!|||!.!:!!||||||||| ||||||||||||:!::!!||||| SerPheIleSerArgLeuGluAlaMetMetAsnLysAlaCysPheLeuGluLeuMetArgCy 5518 : AGCTTCATATCGCGCTTAGAGGCAATGATGAACAAAGCGTGTTTCCTGGAGTTAATGAGGTG : 5458 289 : sThrMetGluIleCysValIleGlyTyrPheIleValSer >>>> Target Intron 1 : 302 |||||||! ||||||!.!|||||||||!:!||| !!! ! 835 bp sThrMetAlaIleCysAlaIleGlyTyrTyrIlePheMet++ 5457 : CACGATGGCTATTTGCGCAATTGGATATTATATATTCATGgt.................... : 5414 303 : >>>> GluTrpAlaGluHisAspValArgAsnLeuAlaSerTyrValMetMetPheIleA : 320 ||||||.!!||| !|||!.!!:!! ||| !!!!|||:!!:!:! .!!:!!| ++GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValA 5413 : .....agGAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTG : 4527 321 : laIleCysTyrAsnIlePheIleLeuCysTyrIleGlyGluLeuLeuThrGluGln >>>> : 339 ||:!! ! ||| |||::::::|||||||||.!!!!: !|||||||||||| laValValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4526 : CTGTTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt.... : 4468 340 : Target Intron 2 >>>> CysLysLysIleGlyGluValValTyrMetThrAsnTrp : 351 92 bp ||| !|||:!!|||||||||||||||||||||:!!||| ++CysLeuLysValGlyGluValValTyrMetThrAspTrp 4467 : .....................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGG : 4342 352 : TyrTyrLeuProGlyLysThrIleLeuAspLeuIleMetValIleAlaArgSerAsnValVa : 372 |||||||||||| !!:!! !|||||||||||||||:!!:!!|||.!!|||||||||||||| TyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValVa 4341 : TATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGT : 4279 373 : lValHisIleThrAlaGlyLysLeuValHisMetSerValTyrThrPheGlySer >>>> : 391 ||||.!.|||||||||||||||::: |||||||||:!!||||||||||||..! lValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4278 : CGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt..... : 4220 392 : Target Intron 3 >>>> ValValLysThrGlyPheAlaTyrLeuAsnLeuLeuGlnG : 404 89 bp ||||||||||||||||||||||||||||||:!!||| | ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysG 4219 : ....................agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTC : 4094 405 : lnMet : 405 ||||| lnMet 4093 : AAATG : 4089 vulgar: gi|350422524|ref|XP_003493190.1| 267 405 . LHQN01027980.1 5518 4088 - 450 M 34 102 5 0 2 I 0 831 3 0 2 M 37 111 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4089 5518 450 - . gene_id 1 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 5417 5518 . - . LHQN01027980.1 exonerate:protein2genome:local exon 5417 5518 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 5415 5416 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4582 5416 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4582 4583 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4471 4581 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4581 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 2 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 2 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 1 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4223 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 3 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 3 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 2 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4089 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4089 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4089 5518 450 - . alignment_id 1 ; Query gi|350422524|ref|XP_003493190.1| ; Align 5519 268 102 ; Align 4582 302 111 ; Align 4379 339 156 ; Align 4134 391 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 367 Query range: 2 -> 165 Target range: 486 -> 3 3 : AsnGluAlaValValIleGluAlaAspSerAsnSerAsnSerAspTyrSerLeuGlnLeuAsnA : 24 :!!:!!.!!||||||! !||| !:!!! !!.!:!!!:!||||||||||||||||||! !|||| AspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnA 486 : GACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATC : 423 25 : rgTrpPheLeuLysProIleGlyAlaTrpProSerSerProSerThrThrArgLeuGluLysIl : 45 ||||| :!!||| !||||||.!!||||||..!! ! !!||| !.!||||||!:!! rgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSer------AsnLeuGluArgAs 422 : GATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCG------AACCTCGAGAGAAA : 366 46 : eIleSerPheLeuLeuAsnThrIleCysTyrSerThrValIleIleThrAlaIleProSerLeu : 66 !|||||| :!!||||||..!|||||||||!!!.!!:!!:!!.!!:!! !||||||!!!! ! nIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSer 365 : CATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCG : 303 67 : LeuGlnMetIleLeuGluAsnGluSerIleAsnSerLysLeuLysAsnLeuAspPheLeuSerH : 88 |||!!.:!:!!:||||||!!.! !!!!.!! !!!!!|||:!!|||! |||! ! ||||||| LeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyProLeuSerH 302 : TTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCC : 237 89 : isLeuIleValSerIlePheThrTyrSerValLeuLeuLeuHisAsnLysAspIleArgArgCy : 109 ||! !:!: !!!!!|||.!!!:!|||!!!:!!|||||||||!....!||| !|||!.!!.!! isTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPh 236 : ACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTT : 174 110 : sValGluHisMetLysAlaAspTrpArgAlaValSerArgLysGluAspGlnHisValMetMet : 130 !|||.!.||||||:!!.!!|||||||||.!!..!:::||||||||| :::...||||||:!! eValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeu 173 : TGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGCTG : 111 131 : LysAsnAlaLysPheGlyArgTyrValAlaAlaPheCysAlaIlePheValGlnGlySerValL : 152 ||| !!|||||||||.!!||||||!.!||| !|||||||||||||||:!!!!.|||.!!:!!| LysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleL 110 : AAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTATAC : 45 153 : euCysPheCysPheValThrAlaLeuAsnThrLeuGluIle : 165 || ! !:!||| !!:!!||||||! !!.!|||:!!! :!! euGlyTyrCysValMetThrAlaSerThrThrMetValVal 44 : TTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTC : 4 vulgar: gi|350422524|ref|XP_003493190.1| 2 165 . LHQN01027980.1 486 3 - 367 M 36 108 G 2 0 M 125 375 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4 486 367 - . gene_id 2 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4 486 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4 486 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 4 486 367 - . alignment_id 2 ; Query gi|350422524|ref|XP_003493190.1| ; Align 487 3 108 ; Align 379 41 375 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 340 -> 382 Target range: 1981 -> 1855 341 : LysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProGlyLysThrIleLeuAs : 361 |||:!!|||! ! !||||||||||||.!.|||||| ||| !! !|||||| !|||! LysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGl 1981 : AAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGG : 1921 362 : pLeuIleMetValIleAlaArgSerAsnValValValHisIleThrAlaGlyLysLeuValH : 382 !!!!:!!|||:!!|||:!!||||||!:!:!!|||:!! ! |||||||||||||||!!!|||: yPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheValT 1920 : TTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTAT : 1858 383 : is : 382 !! yr 1857 : AC : 1856 vulgar: gi|350422524|ref|XP_003493190.1| 340 382 . LHQN01027980.1 1981 1855 - 123 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1856 1981 123 - . gene_id 3 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1856 1981 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1856 1981 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1856 1981 123 - . alignment_id 3 ; Query gi|350422524|ref|XP_003493190.1| ; Align 1982 341 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 371 Query range: 259 -> 393 Target range: 5607 -> 4210 260 : GluHisHisLeuArgValLeu{Se} >>>> Target Intron 1 >>>> {r}PheIl : 269 |||.!.|||||||||||||||{!:} 68 bp {!}||||| GluGluHisLeuArgValLeu{As}++ ++{n}PheIl 5607 : GAGGAACATTTGAGAGTGTTG{AA}gt.........................ag{C}TTCAT : 5512 270 : eAlaGlyIleGluAspValMetAsnGluIleCysPheMetGluLeuPheLysCysThrMetA : 290 |:!! !!:!!|||! :!!||||||:!! ||||||:!!||||||.!.!:!||||||||| eSerArgLeuGluAlaMetMetAsnLysAlaCysPheLeuGluLeuMetArgCysThrMetA 5511 : ATCGCGCTTAGAGGCAATGATGAACAAAGCGTGTTTCCTGGAGTTAATGAGGTGCACGATGG : 5449 291 : snMetCysMetIleGlyTyrTyrIleLeuThr >>>> Target Intron 2 >>>> G : 301 !!!:||| |||||||||||||||!!!! ! 835 bp | laIleCysAlaIleGlyTyrTyrIlePheMet++ ++G 5448 : CTATTTGCGCAATTGGATATTATATATTCATGgt.........................agG : 4581 302 : luTrpLysGluHisAspIleGlnTyrMetProAlaTyrLeuIleIleLeuPheSerMetThr : 321 |||||! !||| !||| !||| :!: !.!!|||:!!:!!! !||| !!:!!:!:..! luTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValVal 4580 : AATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTGTT : 4521 322 : PheAsnIlePheValValCysTyrIleGlyGluThrLeuLysGluGln >>>> Target : 338 ||| |||::::::|||||||||.!!!!:! !|||! !|||||| 92 SerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4520 : tctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt............ : 4468 339 : Intron 3 >>>> CysGluLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLe : 353 bp ||| !|||||||||||||||||||||||||||:!!||||||||||| ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLe 4467 : .............agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCT : 4333 354 : uProTyrLysAspIleLeuAsnLeuIleGlnIleIleLeuArgSerSerMetMetIleLysI : 374 |||| ! !:! ||||||:!!||||||! !|||||| !||||||!:!:!!:!::!!:!!| uProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluI 4332 : GCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAA : 4270 375 : leThrAlaGlyLysLeuValHisMetSerIlePheThrPheGlyAsnValIleLysThr : 393 ||||||||||||||::: |||||||||:!!!:!|||||||||:!!|||! !:!!||| leThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThr 4269 : TCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 4211 vulgar: gi|350422514|ref|XP_003493187.1| 259 393 . LHQN01027980.1 5607 4210 - 371 M 7 21 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 33 99 5 0 2 I 0 831 3 0 2 M 37 111 5 0 2 I 0 88 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4211 5607 371 - . gene_id 1 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 5585 5607 . - . LHQN01027980.1 exonerate:protein2genome:local exon 5585 5607 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 5583 5584 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 5517 5584 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 5517 5518 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 5417 5516 . - . LHQN01027980.1 exonerate:protein2genome:local exon 5417 5516 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 5415 5416 . - . intron_id 2 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4582 5416 . - . intron_id 2 LHQN01027980.1 exonerate:protein2genome:local splice3 4582 4583 . - . intron_id 1 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4471 4581 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4581 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 3 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 3 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 2 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4211 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4211 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4211 5607 371 - . alignment_id 1 ; Query gi|350422514|ref|XP_003493187.1| ; Align 5608 260 21 ; Align 5516 268 99 ; Align 4582 301 111 ; Align 4379 338 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 370 Query range: 2 -> 164 Target range: 483 -> 3 3 : GluSerValArgIleGluGluAsnLeuTyrSerLeuSerAspTyrSerLeuGlnLeuAsnArgT : 24 :!!!!!||| !! !||| |||:!! !:!! !||||||||||||||||||! !||||||| LysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgT 483 : AAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGAT : 420 25 : rpPheLeuLysProIleGlyValTrpProLeuSerAlaSerThrSerArgLeuGluArgIleIl : 45 || :!!||| !||||||..!|||||| !! !:!!|||!.!|||||||||! !|| rpAlaMetLysSerIleGlyThrTrpPro------GlnPheSerSerAsnLeuGluArgAsnIl 419 : GGGCGATGAAAAGCATAGGCACATGGCCA------CAGTTCTCGTCGAACCTCGAGAGAAACAT : 363 46 : eCysPheValLeuIlePheLeuCysTyrPhePheValLeuPheThrIleIleProCysLeuLeu : 66 |! ! :!!|||! ! ! :!!|||||| ! :!!||||||:!!||||||||||||! !||| eSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeu 362 : CTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTG : 300 67 : HisLeuIleLeuGluAspGluAsnIleArgMetLysLeuLysIleLeuGlyProPheSerHisT : 88 ||||||!!:|||||| ! ! !!.!.!! !! !|||:!!|||||||||||||||!!.||||||| HisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyProLeuSerHisT 299 : CACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACT : 234 89 : rpLeuIleGlyGlyIleAsnTyrSerThrLeuLeuLeuArgSerArgGluMetArgValCysIl : 109 ||:!!.!! !! !|||!:!|||!!!! !|||||||||||| !!!:! !!:!.! !! !:! rpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPheVa 233 : GGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTTTGT : 171 110 : eGluHisIleGlnAsnAspTrpLysIleValThrArgGlnLysAspGlnGlnValMetMetArg : 130 !.!.|||!!::!!!.!||||||!:!! ..!||||||:::::: ::::::||||||:!!!:! lAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLys 170 : CAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGCTGAAG : 108 131 : TyrAlaArgIleGlyArgTyrIleThrValPheCysThrAlaPheMetGlnValGlyValLeuS : 152 ||||||!:!.!!.!!|||||| .!!:!!||||||.!! !|||!!:!!.! !|||:!!|||. TyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleLeuG 107 : TACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTATACTTG : 42 153 : erHisCysThrMetAlaAlaPheAlaThrLysIleIle : 164 !!:!!|||..!|||.!!|||! !.!!|||! !:!!:!! lyTyrCysValMetThrAlaSerThrThrMetValVal 41 : GATATTGTGTTATGACAGCGTCCACCACGATGGTTGTC : 4 vulgar: gi|350422514|ref|XP_003493187.1| 2 164 . LHQN01027980.1 483 3 - 370 M 31 93 G 2 0 M 129 387 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4 483 370 - . gene_id 2 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4 483 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4 483 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 4 483 370 - . alignment_id 2 ; Query gi|350422514|ref|XP_003493187.1| ; Align 484 3 93 ; Align 391 36 387 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 129 Query range: 322 -> 381 Target range: 2017 -> 1855 323 : AsnIlePheValValCysTyrIleGlyGluThrLeuLysGluGlnCysGluLysValGlyGl : 343 |||||||||:!!:!!|||||||||||||||||| !||| ||||||! AsnIlePheIleLeuCysTyrIleGlyGluThrThrLys---------------ValGlyGl 2017 : AATATATTCATACTTTGTTACATCGGAGAGACTACCAAA---------------GTCGGAGG : 1972 344 : uValValTyrMetThrAsnTrpTyrTyrLeuProTyrLysAspIleLeuAsnLeuIleGlnI : 364 ! !||||||||||||.!.|||||| ||| !! ! ||| ! !|||..!!!!:!!..!| yLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGlyPheValMetI 1971 : AAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGGTTTTGTAATGA : 1909 365 : leIleLeuArgSerSerMetMetIleLysIleThrAlaGlyLysLeuValHis : 381 |||||! !||||||||||||:!!|||||||||||||||||||||!!!|||:!! leIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheValTyr 1908 : TCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTATAC : 1856 vulgar: gi|350422514|ref|XP_003493187.1| 322 381 . LHQN01027980.1 2017 1855 - 129 M 13 39 G 5 0 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1856 2017 129 - . gene_id 3 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1856 2017 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1856 2017 . - . insertions 0 ; deletions 5 LHQN01027980.1 exonerate:protein2genome:local similarity 1856 2017 129 - . alignment_id 3 ; Query gi|350422514|ref|XP_003493187.1| ; Align 2018 323 39 ; Align 1979 341 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 719 Query range: 2 -> 299 Target range: 1115 -> 162 3 : AsnGluAlaValValIleGluAlaAspSerAsnSerAsnSerAspTyrSerLeuGlnLeuAs : 23 :!!:!!.!!||||||! !||| !:!!! !!.!:!!!:!||||||||||||||||||! !|| AspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAs 1115 : GACAAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTGGAA : 1055 24 : nArgTrpPheLeuLysProIleGlyAlaTrpProSerSerProSerThrThrArgLeuGluL : 44 ||||||| :!!||| !|||||||||||||||..!||| !!||| !.!||||||! nArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSerSer------AsnLeuGluA 1054 : TCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCGTCG------AATCTCGAGA : 998 45 : ysIleIleSerPheLeuLeuAsnThrIleCysTyrSerThrValIleIleThrAlaIlePro : 64 :!||||||||| :!!||||||..!|||||||||!!!.!!|||:!!.!!||| !|||||| rgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIlePro 997 : GAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATCCCT : 938 65 : SerLeuLeuGlnMetIleLeuGluAsnGluSerIleAsnSerLysLeuLysAsnLeuAspPh : 85 !!!! !|||!!.:!:!!:||||||!!.|||!!!.!! !!!!!|||:!!|||! |||! ! CysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGlyPr 937 : TGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGGTCC : 875 86 : eLeuSerHisLeuIleValSerIlePheThrTyrSerValLeuLeuLeuHisAsnLysAspI : 106 |||||||||! !:!: !!!!!|||.!!!:!|||!!!:!!|||||||||!....!||| !| oLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrI 874 : GTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCA : 812 107 : leArgArgCysValGluHisMetLysAlaAspTrpArgAlaValSerArgLysGluAspGln : 126 |||||!.!! ! !!.!.||||||:!!.!!|||||||||.!!..!! ||||||||| ::: leArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLysLys 811 : TACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaagaaa : 752 127 : HisValMetMetLysAsnAlaLysPheGlyArgTyrValAlaAlaPheCysAlaIlePheVa : 147 ...:::|||:!!||| !!|||||||||.!!||||||!.!||| !! !|||.!!||||||:! GluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIl 751 : gaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCAT : 689 148 : lGlnGlySerValLeuCysPheCysPheValThrAlaLeuAsnThrLeuGluIleGlnIleG : 168 !!!.|||.!!:!!||| ! !:!||| !!:!!||||||!!!!.!|||:!!! :!! !:!!| eHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValValG 688 : ACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTG : 626 169 : lyAsnGluThrArgIleLeuHisValLeuProCysAlaValTyrLysLysLeuValAsnVal : 188 |||||||||||! !||||||!.!|||||||||! !!:!!|||||| !|||:!! ||| lyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProVal 625 : GAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTC : 566 189 : AspGluSerProThrAsnGluPheMetIlePheLeuGlnIleTrpSerThrPheIleAlaAs : 209 ||| !!:! !!! !||||||.!!:!::!!!!.! !|||.!! ||| !||||||||||| AspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAs 565 : GATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAA : 503 210 : nCysSerThrValGlyIlePheSerLeuAlaAlaValLeuAlaAlaHisAlaCysGlyGlnL : 230 | !|||.!!:!!.!!:!!.!.||||||.!!::!!.!|||.!!:!!||||||! !||||||| nThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnL 502 : CACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGT : 440 231 : euAsnValValMetLeuTrpIleAlaGluPheValAsnGluAlaThrValLysSerArgThr : 250 ||..!||||||||||||! !|||! !!!:||||||!:!!!:|||! ! !!:!.!!!:! ! euGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLysAsp 439 : TGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAGGAC : 380 251 : GlyGlyPheThrLysIleGlyIleIleValGluArgHisLeuArgThrLeu{As} >>>> : 268 ! ! !||| !:!!||| !! !|||||||||!:!|||||||||..!|||{||} AspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeu{As}++ 379 : GATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG{AA}gt..... : 322 269 : Target Intron 1 >>>> {n}PheIleSerTyrIleGluGlyValMetAsnLysIleC : 281 68 bp {|}||||||||| !||||||!.!:!!!!:|||||| | ++{n}PheIleSerArgIleGluAlaMetIleAsnLysAlaC 321 : ....................ag{C}TTCATATCGCGCATAGAGGCAATGATAAACAAAGCGT : 219 282 : ysPheLeuGluMetLeuArgCysThrMetGluIleCysValIleGlyTyrPheIle : 299 |||||||||||:!: !|||||||||!!:! |||||||||:!!||||||!:!||| ysPheLeuGluLeuThrArgCysThrIleAlaIleCysValLeuGlyTyrTyrIle 218 : GTTTCCTGGAGTTAACGAGGTGCACGATAGCTATATGCGTACTTGGATATTATATA : 163 vulgar: gi|350422524|ref|XP_003493190.1| 2 299 . LHQN01028641.1 1115 162 - 719 M 36 108 G 2 0 M 227 681 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 163 1115 719 - . gene_id 1 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1115 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1115 . - . insertions 0 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 163 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 163 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 163 1115 719 - . alignment_id 1 ; Query gi|350422524|ref|XP_003493190.1| ; Align 1116 3 108 ; Align 1008 41 681 ; Align 256 269 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 626 Query range: 2 -> 266 Target range: 1112 -> 326 3 : GluSerValArgIleGluGluAsnLeuTyrSerLeuSerAspTyrSerLeuGlnLeuAsnAr : 23 :!!!!!||| !! !||| |||:!! !:!! !||||||||||||||||||! !||||| LysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnAr 1112 : AAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTGGAATCG : 1052 24 : gTrpPheLeuLysProIleGlyValTrpProLeuSerAlaSerThrSerArgLeuGluArgI : 44 |||| :!!||| !||||||!.!|||||| !|||:!!|||!.!|||||||||| gTrpAlaMetLysSerIleGlyAlaTrpPro------GlnSerSerSerAsnLeuGluArgI 1051 : ATGGGCGATGAAAAGCATAGGCGCATGGCCA------CAGTCCTCGTCGAATCTCGAGAGAA : 995 45 : leIleCysPheValLeuIlePheLeuCysTyrPhePheValLeuPheThrIleIleProCys : 64 |||||! ! :!!|||! ! ! :!!|||||| ! |||||||||||||||||||||||| leIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIleProCys 994 : TCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATCCCTTGT : 935 65 : LeuLeuHisLeuIleLeuGluAspGluAsnIleArgMetLysLeuLysIleLeuGlyProPh : 85 ! !||||||:!!!!:|||||| ! |||!.!.!! !! !|||:!!|||||||||||||||!! SerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGlyProLe 934 : TCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTT : 872 86 : eSerHisTrpLeuIleGlyGlyIleAsnTyrSerThrLeuLeuLeuArgSerArgGluMetA : 106 .|||||||||:!!.!! !! !|||!:!|||!!!! !|||||||||||| !!!:! !!:| uSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleA 871 : GAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATAC : 809 107 : rgValCysIleGluHisIleGlnAsnAspTrpLysIleValThrArgGlnLysAspGlnGln : 126 || !! !.!!.!.|||!!::!!!.!||||||!:!! ..!! |||:::::: :::::: rgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLysLysGlu 808 : GTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaagaaagaa : 749 127 : ValMetMetArgTyrAlaArgIleGlyArgTyrIleThrValPheCysThrAlaPheMetGl : 147 :::|||:!!!:!||||||!:!.!!.!!|||||| .!!:!!! !|||||| !|||!!:!! IleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHi 748 : ataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACA : 686 148 : nValGlyValLeuSerHisCysThrMetAlaAlaPheAlaThrLysIleIleGluIleGlyA : 168 .! !|||:!!|||.!!:!!|||..!|||.!!||||||.!!|||! !:!!:!!! !:!!|||| sGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValValGlyA 685 : CGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTGGAA : 623 169 : snGluThrArgIleIleArgLeuLeuProCysGlyPheTyrLysSerLeuIleSerIleAsp : 188 ||||||||! !|||:!:|||:!!||||||! !.!.||||||.!!|||:!! !!:!!||| snGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAsp 622 : ACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTCGAT : 563 189 : ValSerProThrTyrGluIleIleLeuAlaSerGlnPheValSerGlyPheIleAlaAsnSe : 209 ..!!:! !!! ! !!||||||:!!||| !|||||||||:!!||||||||||||||||||!! ThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAsnTh 562 : ACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAACAC : 500 210 : rSerAlaValGlyAlaValGlyMetAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuT : 230 !||||||:!!.!!!.!:!!.!!:!:.!!::!!.!.!..!!:!!||||||! !||||||||| rSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuG 499 : CAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGG : 437 231 : hrValLeuMetIleTrpIleLysGluTyrValAsnArgSerLysAspHisSerArgAsnVal : 250 !|||:!!|||:!:! !|||:!!!!:!:!|||!:! !:!!!:! !....!!!:!:!!! ! lyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLysAspAsp 436 : GCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAGGACGAT : 377 251 : GlyLeuAsnGluIleGlyGluIleValGluHisHisLeuArgValLeu : 266 !!!!:!!|||||| ! !||||||||| ! ||||||||||||||| HisPheAspGluIleProThrIleValGluLysHisLeuArgValLeu 376 : CATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG : 327 vulgar: gi|350422514|ref|XP_003493187.1| 2 266 . LHQN01028641.1 1112 326 - 626 M 31 93 G 2 0 M 231 693 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 327 1112 626 - . gene_id 1 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 327 1112 . - . LHQN01028641.1 exonerate:protein2genome:local exon 327 1112 . - . insertions 0 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local similarity 327 1112 626 - . alignment_id 1 ; Query gi|350422514|ref|XP_003493187.1| ; Align 1113 3 93 ; Align 1020 36 693 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 270 Query range: 116 -> 216 Target range: 5720 -> 5420 117 : SerLysLysAlaThrPheLeuSerCysLeuTyrGlnValSerIleSerPheCysAlaPheMe : 137 ..!:::... !:!!|||! !! ! !!! ! :!!||| !||||||!!.|||||| !:! GluArgSerLeuSerPheCysPheThrPheGluLysValHisIleSerLeuCysAlaAlaLe 5720 : GAACGTTCTCTGTCATTCTGTTTCACGTTTGAAAAAGTGCATATATCGTTATGCGCCGCTCT : 5660 138 : tPheValLeuLeuProThrIleProProIleLeuAsnValValAlaProLeuAsnGluSerA : 158 :|||:!!! !|||||| !:!: !!|||||||||:!!:!!:!! !||||||||||||!!!| uPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrA 5659 : ATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGC : 5597 159 : rgSerArgGluPheIleTyrProSerTyrTyrPheValAspGluGlnGlnTyrTyrTyrPro : 178 ||:!!||| !|||:!!||||||:!!||||||||||||||||||.!.:!!||| !||| ! rgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeu 5596 : GAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTG : 5537 179 : IleLeuValHisMetIleSerValAlaValIleLeuThrSerValTyrIleAlaCysAspIl : 199 |||:!!! !|||||| ! !|||!.!|||!!:|||! !||||||!:! !||||||||| IleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAl 5536 : ATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGC : 5474 200 : eAsnLeuValHisValValHisHisGlyCysAlaLeuLeuAlaIleSerGly : 216 !|||! !|||:!!!.!|||!!.|||!.!|||!.!||||||||||||:!!||| aAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5473 : CAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5421 vulgar: gi|350396218|ref|XP_003484482.1| 116 216 . LHQN01028732.1 5720 5420 - 270 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5720 270 - . gene_id 1 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5720 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5720 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5720 270 - . alignment_id 1 ; Query gi|350396218|ref|XP_003484482.1| ; Align 5721 117 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 243 Query range: 287 -> 385 Target range: 7969 -> 7605 288 : LeuSerThrMetGluIleGlyValArgTyrPheThrPheCysAlaPheThrLeuSerGlnMe : 308 :!!|||||||||.!. ! !!|||..!!:!!:!! !!:!|||!.!||| !:!! !|||:! ValSerThrMetAsnProCysValGluPheTyrLysTyrCysGlyPheLeuValValGlnLe 7969 : GTATCCACGATGAACCCTTGCGTGGAGTTCTACAAGTATTGCGGTTTCTTGGTGGTGCAACT : 7909 309 : tThrHisLeuLeuPheLeuThrIleMetGlyGlnPheLeuIleAsnSerAsnAspGluThrP : 329 !..!|||||||||||||||:!!|||..!|||!!.|||:!!||| !|||:!!||| !|||! uValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleValSerHisAspThrThrT 7908 : GGTACATTTGCTTTTCCTTTCTATCCAGGGACACTTCGTTATAGTCTCGCATGACACGACTT : 7846 330 : heGlnAla{Il} >>>> Target Intron 1 >>>> {e}CysGluAlaLysTrpTyr : 338 :!.!. !{||} 70 bp {|}! !...|||! !|||||| yrAspAsn{Il}++ ++{e}TyrSerAlaThrTrpTyr 7845 : ACGATAAT{AT}gt.........................ag{A}TACAGCGCTACATGGTAC : 7749 339 : AsnGlySerSerLysThrGlnSerLeuTyrLeuLeuValLeuArgLysCysLeuSerProPr : 359 ||||||!!! !!|||..!|||:!!||||||:!!|||!.!||||||!:! !|||!!!||||| AsnGlyThrProLysValGlnAlaLeuTyrValLeuAlaLeuArgArgAsnLeuThrProPr 7748 : AACGGTACACCGAAAGTGCAAGCTTTATACGTGCTAGCTTTGAGAAGGAACTTGACTCCACC : 7686 360 : oLysLeuThrGlyGlyGlyValIleSerLeuAsnLeuGluSerPheValGlnValLeuLysA : 380 | !:!!|||!.!||||||:!!||||||||||||||||||!!!|||!.!:!!||| ! !| oLeuIleThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGluValGlyAlaA 7685 : GCTGATTACTGCCGGAGGACTGATCTCCTTGAATTTGGAGACTTTCGCGGAGGTAGGTGCAG : 7623 381 : laSerPheSerTyrTyr : 385 ||! ! !:!! ||| laIleAsnAlaIleTyr 7622 : CAATTAACGCTATATAC : 7606 vulgar: gi|350396218|ref|XP_003484482.1| 287 385 . LHQN01028732.1 7969 7605 - 243 M 44 132 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 7606 7969 243 - . gene_id 2 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 7836 7969 . - . LHQN01028732.1 exonerate:protein2genome:local exon 7836 7969 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 7834 7835 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 7766 7835 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 7766 7767 . - . intron_id 0 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 7606 7765 . - . LHQN01028732.1 exonerate:protein2genome:local exon 7606 7765 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 7606 7969 243 - . alignment_id 2 ; Query gi|350396218|ref|XP_003484482.1| ; Align 7970 288 132 ; Align 7765 333 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 141 Query range: 333 -> 377 Target range: 4472 -> 4340 334 : GluAlaLysTrpTyrAsnGlySerSerLysThrGlnSerLeuTyrLeuLeuValLeuArgLy : 354 |||:!!! !|||||||||..!|||!!!|||||||||:!!||||||:!!|||!.!||||||!. GluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeuArgSe 4472 : GAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTACGGAG : 4412 355 : sCysLeuSerProProLysLeuThrGlyGlyGlyValIleSerLeuAsnLeuGluSerPheV : 375 . !!|||!:!|||||| !||||||!.!|||||| !!|||!!!|||||||||:!!!!!||| rSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLysThrPheS 4411 : TAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAGACCTTCT : 4349 376 : alGlnVal : 377 !:!!||| erGluVal 4348 : CAGAGGTA : 4341 vulgar: gi|350396218|ref|XP_003484482.1| 333 377 . LHQN01028732.1 4472 4340 - 141 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 4341 4472 141 - . gene_id 3 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 4341 4472 . - . LHQN01028732.1 exonerate:protein2genome:local exon 4341 4472 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 4341 4472 141 - . alignment_id 3 ; Query gi|350396218|ref|XP_003484482.1| ; Align 4473 334 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 137 Query range: 134 -> 183 Target range: 1866 -> 1719 135 : AlaPheMetPheValLeuLeuProThrIleProProIleLeuAsnValValAlaProLeuAs : 155 ||| !!!:|||:!!! !:!!||| ! !||| !||||||:!!:!! !||||||||||| AlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAspIleCysAlaProLeuAs 1866 : GCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTGCGCGCCACTGAA : 1806 156 : nGluSerArgSerArgGluPheIleTyrProSerTyrTyrPheValAspGluGlnGlnTyrT : 176 |:!!!!!|||!.!|||! !|||:!!||||||:!!||||||!:::!!||| :!!||||||| nLysThrArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrT 1805 : CAAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACT : 1743 177 : yrTyrProIleLeuValHisMet : 183 || !!!::!!:!!|||!!: yrMetIleMetIleIleHisIle 1742 : ACATGATAATGATAATACACATA : 1720 vulgar: gi|350396218|ref|XP_003484482.1| 134 183 . LHQN01028732.1 1866 1719 - 137 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1720 1866 137 - . gene_id 4 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 1720 1866 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1720 1866 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1720 1866 137 - . alignment_id 4 ; Query gi|350396218|ref|XP_003484482.1| ; Align 1867 135 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350396218|ref|XP_003484482.1| PREDICTED: uncharacterized protein LOC100741444 [Bombus impatiens] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 0 -> 58 Target range: 6291 -> 6117 1 : MetAspTrpGlnThrIleGluAspGlnCysLeuLysAlaAsnLysPhePheGlyGlnLeuVa : 21 |||||| ! |||:!!||| ! !::! !|||!:! !|||||| .!!|||..!|||.. MetAspAlaIleThrLeuGluLysArgTyrLeuArgIleAsnLysLysLeuGlyMetLeuTh 6291 : ATGGATGCGATCACGTTAGAGAAACGTTACTTGAGAATCAACAAGAAGCTCGGCATGCTAAC : 6231 22 : lGlyValTrpProAsnGlnGluLysPheThrLysIleIleIleArgPheValIlePheIleI : 42 !|||||||||||| !!|||:!!!..! !!||| |||! !||| !|||:!:.!!.!!: rGlyValTrpProTyrGlnLysSerSerProLysTrpIleSerArgThrValValLeuPheV 6230 : CGGTGTGTGGCCCTATCAAAAGAGCTCGCCAAAATGGATCAGTCGAACCGTAGTGCTCTTTG : 6168 43 : leIleIleThrThrIleThrAlaGlnIleSerArgValValValPheTyr : 58 !!|||||| !! ! !..!.!!|||:!!...:::::: :::..!!:! alIleIleProCysTyrValThrGlnValGluLysIleArgIleIlePhe 6167 : TAATAATACCTTGTTACGTTACACAGGTAgaaaaaataaggattatCTTT : 6118 vulgar: gi|350396218|ref|XP_003484482.1| 0 58 . LHQN01028732.1 6291 6117 - 105 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 6118 6291 105 - . gene_id 5 ; sequence gi|350396218|ref|XP_003484482.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 6118 6291 . - . LHQN01028732.1 exonerate:protein2genome:local exon 6118 6291 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 6118 6291 105 - . alignment_id 5 ; Query gi|350396218|ref|XP_003484482.1| ; Align 6292 1 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350399566|ref|XP_003485570.1| PREDICTED: uncharacterized protein LOC100741772 [Bombus impatiens] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 105 -> 191 Target range: 5663 -> 5408 106 : GlyLeuPheLeuLeuValProLeuIleSerProIleLeuAspIleValHisProIleAsnGl : 126 !.!||||||:!!! !:!!|||!!!:!:||||||||||||||||||:!! |||:!:|||! AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGl 5663 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGA : 5603 127 : yThrArgThrArgGlnGlnLeuLeuArgValAsnTyrIlePhePheAspAspAspAspTyrP : 147 !||||||.!!||| !!!!:!! ! ! !||| !||| !!|||!!:||| ! ||| uThrArgAlaArg---LeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrA 5602 : GACGCGAGCACGG---TTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATC : 5543 148 : hePheTyrIleTyrLeuGlnLeuPheCysGlyAlaAlaValValValTyrThrIleIleGly : 167 !!:!! ||| !!!.:!!!:! !! !!.!!.!:!!:!!:!!! !..!.!! !!.! rgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 5542 : GTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 5483 168 : AlaAspTrpLeuTyrMetLeuIleIleHisHisSerSerGlyLeuPheAlaValCysGlyHi : 188 ..!||| !|||:!!! ! !:!:!!.|||:!!!!!||||||!!.|||:!!...||| ! CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly** 5482 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTA : 5420 189 : sArgValGln : 191 !|||||| *LeuValGln 5419 : ATTAGTTCAA : 5409 vulgar: gi|350399566|ref|XP_003485570.1| 105 191 . LHQN01028732.1 5663 5408 - 128 M 25 75 G 1 0 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5409 5663 128 - . gene_id 1 ; sequence gi|350399566|ref|XP_003485570.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5409 5663 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5409 5663 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5409 5663 128 - . alignment_id 1 ; Query gi|350399566|ref|XP_003485570.1| ; Align 5664 106 75 ; Align 5589 132 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 362 Query range: 2 -> 164 Target range: 387 -> 867 3 : GluSerValArgIleGluGluAsnLeuTyrSerLeuSerAspTyrSerLeuGlnLeuAsnArgT : 24 :!!!!!||| !! !||| |||:!! !:!! !||||||||||||||||||! !||||||| LysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgT 388 : AAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGAT : 451 25 : rpPheLeuLysProIleGlyValTrpProLeuSerAlaSerThrSerArgLeuGluArgIleIl : 45 || :!!||| !||||||..!|||||| !! !:!!|||!.!|||||||||! !|| rpAlaMetLysSerIleGlyThrTrpPro------GlnPheSerSerAsnLeuGluArgAsnIl 452 : GGGCGATGAAAAGCATAGGCACATGGCCA------CAGTTCTCGTCGAACCTCGAGAGAAACAT : 508 46 : eCysPheValLeuIlePheLeuCysTyrPhePheValLeuPheThrIleIleProCysLeuLeu : 66 |! ! :!!|||! ! ! :!!|||||| ! :!!||||||:!!||||||||||||! !||| eSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeu 509 : CTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTG : 571 67 : HisLeuIleLeuGluAspGluAsnIleArgMetLysLeuLysIleLeuGlyProPheSerHisT : 88 ||||||!!:|||||| ! ! !!.!.!! !! !|||:!!|||||||||||| !!!!.||||||| HisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisT 572 : CACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACT : 637 89 : rpLeuIleGlyGlyIleAsnTyrSerThrLeuLeuLeuArgSerArgGluMetArgValCysIl : 109 ||:!!.!! !! !|||!:!|||!!!! !|||||||||||| !!!:! !!:!.! !! !:! rpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPheVa 638 : GGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTTTGT : 700 110 : eGluHisIleGlnAsnAspTrpLysIleValThrArgGlnLysAspGlnGlnValMetMetArg : 130 !.!.|||!!::!!!.!||||||!:!! ..!||||||:::::: ::::::||||||:!!!:! lAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLys 701 : CAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAG : 763 131 : TyrAlaArgIleGlyArgTyrIleThrValPheCysThrAlaPheMetGlnValGlyValLeuS : 152 ||||||!:!.!!.!!|||||| .!!:!!||||||.!! !|||!!:!!.! !|||:!!|||. TyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleLeuG 764 : TACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACACGGTGGTATACTTG : 829 153 : erHisCysThrMetAlaAlaPheAlaThrLysIleIle : 164 !!:!!|||..!|||.!!|||! !.!!|||! !:!!:!! lyTyrCysValMetThrAlaSerThrThrMetValVal 830 : GATATTGTGTTATGACAGCGTCCACCACGATGGTTGTC : 867 vulgar: gi|350422514|ref|XP_003493187.1| 2 164 . LHQN01028951.1 387 867 + 362 M 31 93 G 2 0 M 129 387 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 388 867 362 + . gene_id 1 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 388 867 . + . LHQN01028951.1 exonerate:protein2genome:local exon 388 867 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 388 867 362 + . alignment_id 1 ; Query gi|350422514|ref|XP_003493187.1| ; Align 388 3 93 ; Align 481 36 387 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 369 Query range: 2 -> 165 Target range: 384 -> 867 3 : AsnGluAlaValValIleGluAlaAspSerAsnSerAsnSerAspTyrSerLeuGlnLeuAsnA : 24 :!!:!!.!!||||||! !||| !:!!! !!.!:!!!:!||||||||||||||||||! !|||| AspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnA 385 : GACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATC : 448 25 : rgTrpPheLeuLysProIleGlyAlaTrpProSerSerProSerThrThrArgLeuGluLysIl : 45 ||||| :!!||| !||||||.!!||||||..!! ! !!||| !.!||||||!:!! rgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSer------AsnLeuGluArgAs 449 : GATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCG------AACCTCGAGAGAAA : 505 46 : eIleSerPheLeuLeuAsnThrIleCysTyrSerThrValIleIleThrAlaIleProSerLeu : 66 !|||||| :!!||||||..!|||||||||!!!.!!:!!:!!.!!:!! !||||||!!!! ! nIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSer 506 : CATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCG : 568 67 : LeuGlnMetIleLeuGluAsnGluSerIleAsnSerLysLeuLysAsnLeuAspPheLeuSerH : 88 |||!!.:!:!!:||||||!!.! !!!!.!! !!!!!|||:!!|||! |||! !! ||||||| LeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuSerH 569 : TTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCC : 634 89 : isLeuIleValSerIlePheThrTyrSerValLeuLeuLeuHisAsnLysAspIleArgArgCy : 109 ||! !:!: !!!!!|||.!!!:!|||!!!:!!|||||||||!....!||| !|||!.!!.!! isTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPh 635 : ACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTT : 697 110 : sValGluHisMetLysAlaAspTrpArgAlaValSerArgLysGluAspGlnHisValMetMet : 130 !|||.!.||||||:!!.!!|||||||||.!!..!:::||||||||| :::...||||||:!! eValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeu 698 : TGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTG : 760 131 : LysAsnAlaLysPheGlyArgTyrValAlaAlaPheCysAlaIlePheValGlnGlySerValL : 152 ||| !!|||||||||.!!||||||!.!||| !|||||||||||||||:!!!!.|||.!!:!!| LysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleL 761 : AAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACACGGTGGTATAC : 826 153 : euCysPheCysPheValThrAlaLeuAsnThrLeuGluIle : 165 || ! !:!||| !!:!!||||||! !!.!|||:!!! :!! euGlyTyrCysValMetThrAlaSerThrThrMetValVal 827 : TTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTC : 867 vulgar: gi|350422524|ref|XP_003493190.1| 2 165 . LHQN01028951.1 384 867 + 369 M 36 108 G 2 0 M 125 375 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 385 867 369 + . gene_id 1 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 385 867 . + . LHQN01028951.1 exonerate:protein2genome:local exon 385 867 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 385 867 369 + . alignment_id 1 ; Query gi|350422524|ref|XP_003493190.1| ; Align 385 3 108 ; Align 493 41 375 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 336 -> 382 Target range: 212 -> 74 337 : GluGlnCysLysLysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProGlyLysT : 358 |||:!! !! |||:!!|||! ! !||||||||||||.!.|||||| ||| !! !|||| GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 359 : hrIleLeuAspLeuIleMetValIleAlaArgSerAsnValValValHisIleThrAlaGlyLy : 379 || !|||! !!!!:!!|||:!!|||:!!||||||!:!:!!|||:!! ! |||||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 380 : sLeuValHis : 382 |!!!|||:!! sPheValTyr 85 : ATTCGTATAC : 75 vulgar: gi|350422524|ref|XP_003493190.1| 336 382 . LHQN01029187.1 212 74 - 128 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 75 212 128 - . gene_id 1 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 75 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 75 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 75 212 128 - . alignment_id 1 ; Query gi|350422524|ref|XP_003493190.1| ; Align 213 337 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 335 -> 385 Target range: 212 -> 62 336 : GluGlnCysGluLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProTyrLysA : 357 |||:!! ! |||||||||! ! !||||||||||||.!.|||||| ||| !! ! ||| GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 358 : spIleLeuAsnLeuIleGlnIleIleLeuArgSerSerMetMetIleLysIleThrAlaGlyLy : 378 ! !|||..!!!!:!!..!||||||! !||||||||||||:!!|||||||||||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 379 : sLeuValHisMetSerIlePhe : 385 |!!!|||:!! !!! ||| sPheValTyr***ThrSerPhe 85 : ATTCGTATACTGAACATCGTTT : 63 vulgar: gi|350422514|ref|XP_003493187.1| 335 385 . LHQN01029187.1 212 62 - 130 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 63 212 130 - . gene_id 1 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 63 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 63 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 63 212 130 - . alignment_id 1 ; Query gi|350422514|ref|XP_003493187.1| ; Align 213 336 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825623|ref|XP_012152696.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: LHQN01040768.1 Habropoda laboriosa contig40768, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 220 -> 271 Target range: 75 -> 228 221 : AspLeuAsnLeuProMetLeuValSerLeuIleSerPheIleSerAlaAsnLeuCysGlnLeuT : 242 !!:|||:::!!! ! !! !|||:!!||| !!!||| ! !.!!..!:!! !!||||||| GluLeuSerPheGluTrpArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuT 76 : GAGTTATCATTTGAATGGCGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTAT : 139 243 : rpValPheThrTyrSerCysAspThrMetThrArgGluSerLeuAsnValGlyThrAlaMetTy : 263 ||:!!|||||||||||||||||| !!!:|||! !||||||||||||:!!!.! !:!!:!:|| rpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTy 140 : GGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATA : 202 264 : rThrAlaProTrpLeuGlnLeuPro : 271 |.!!!.!||||||:!!.!.|||||| rAlaGlyProTrpIleAsnLeuPro 203 : CGCTGGACCATGGATAAATTTACCA : 228 vulgar: gi|805825623|ref|XP_012152696.1| 220 271 . LHQN01040768.1 75 228 + 136 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01040768.1 exonerate:protein2genome:local gene 76 228 136 + . gene_id 1 ; sequence gi|805825623|ref|XP_012152696.1| ; gene_orientation . LHQN01040768.1 exonerate:protein2genome:local cds 76 228 . + . LHQN01040768.1 exonerate:protein2genome:local exon 76 228 . + . insertions 0 ; deletions 0 LHQN01040768.1 exonerate:protein2genome:local similarity 76 228 136 + . alignment_id 1 ; Query gi|805825623|ref|XP_012152696.1| ; Align 76 221 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: LHQN01040768.1 Habropoda laboriosa contig40768, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 265 -> 316 Target range: 75 -> 228 266 : AspLeuAsnLeuProMetArgValSerLeuThrSerPheIleIleSerAsnLeuCysGlnLeuT : 287 !!:|||:::!!! ! !||||||:!!|||.!!!!!||| !!:!!!..!:!! !!||||||| GluLeuSerPheGluTrpArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuT 76 : GAGTTATCATTTGAATGGCGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTAT : 139 288 : rpValPheThrTyrSerCysAspThrMetThrArgGluSerLeuSerValGlyThrAlaMetTy : 308 ||:!!|||||||||||||||||| !!!:|||! !|||||||||!:!:!!!.! !:!!:!:|| rpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTy 140 : GGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATA : 202 309 : rGluAlaProTrpProGlnLeuPro : 316 |! !.!|||||| !.!.|||||| rAlaGlyProTrpIleAsnLeuPro 203 : CGCTGGACCATGGATAAATTTACCA : 228 vulgar: gi|805825625|ref|XP_012152697.1| 265 316 . LHQN01040768.1 75 228 + 136 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01040768.1 exonerate:protein2genome:local gene 76 228 136 + . gene_id 1 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation . LHQN01040768.1 exonerate:protein2genome:local cds 76 228 . + . LHQN01040768.1 exonerate:protein2genome:local exon 76 228 . + . insertions 0 ; deletions 0 LHQN01040768.1 exonerate:protein2genome:local similarity 76 228 136 + . alignment_id 1 ; Query gi|805825625|ref|XP_012152697.1| ; Align 76 266 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825627|ref|XP_012152698.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: LHQN01040768.1 Habropoda laboriosa contig40768, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 197 -> 245 Target range: 84 -> 228 198 : PheGluArgGlnIleIlePheValPheHisPheLeuGlyThrValCysGlnLeuValMetPheS : 219 |||||| !!!:::!! !!!.!.!! ! !! :!! ! !||| !!|||||| !||||||! PheGluTrpArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuTrpMetPheT 85 : TTTGAATGGCGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTATGGATGTTCA : 148 220 : erTyrSerCysAspCysIleIleArgGluSerGluLeuLeuAlaThrAlaAlaPheSerGlyPr : 240 !!||||||||||||||||||! !! !|||||| ! !:!!||| !:!!!.!!:!:!!||||| hrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyPr 149 : CGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACC : 211 241 : oTrpLeuGlnLeuPro : 245 ||||:!!.!.|||||| oTrpIleAsnLeuPro 212 : ATGGATAAATTTACCA : 228 vulgar: gi|805825627|ref|XP_012152698.1| 197 245 . LHQN01040768.1 84 228 + 112 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01040768.1 exonerate:protein2genome:local gene 85 228 112 + . gene_id 1 ; sequence gi|805825627|ref|XP_012152698.1| ; gene_orientation . LHQN01040768.1 exonerate:protein2genome:local cds 85 228 . + . LHQN01040768.1 exonerate:protein2genome:local exon 85 228 . + . insertions 0 ; deletions 0 LHQN01040768.1 exonerate:protein2genome:local similarity 85 228 112 + . alignment_id 1 ; Query gi|805825627|ref|XP_012152698.1| ; Align 85 198 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825623|ref|XP_012152696.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: LHQN01044749.1 Habropoda laboriosa contig44749, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 221 -> 271 Target range: 151 -> 1 222 : LeuAsnLeuProMetLeuValSerLeuIleSerPheIleSerAlaAsnLeuCysGlnLeuTrpV : 243 |||:::!!! ! !! !|||:!!||| !!!|||:!:! !.!!..!:!! !!|||||||||: LeuSerPheGluTrpArgValAlaLeuAlaCysPheLeuMetThrGlyValSerGlnLeuTrpM 151 : TTATCATTTGAATGGCGCGTTGCTTTGGCGTGCTTCTTGATGACGGGCGTGAGTCAACTATGGA : 88 244 : alPheThrTyrSerCysAspThrMetThrArgGluSerLeuAsnValGlyThrAlaMetTyrTh : 264 !!|||||||||||||||||| !:!:|||! !||||||||||||:!!!.! !:!!:!:|||.! etPheThrTyrSerCysAspCysLeuThrThrGluSerLeuAsnIleAlaGluSerValTyrAl 87 : TGTTCACGTATAGTTGCGATTGCCTAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGC : 25 265 : rAlaProTrpLeuGlnLeuPro : 271 !!.!||||||:!!.!.|||||| aGlyProTrpIleAsnLeuPro 24 : TGGACCATGGATAAATTTACCA : 2 vulgar: gi|805825623|ref|XP_012152696.1| 221 271 . LHQN01044749.1 151 1 - 139 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01044749.1 exonerate:protein2genome:local gene 2 151 139 - . gene_id 1 ; sequence gi|805825623|ref|XP_012152696.1| ; gene_orientation . LHQN01044749.1 exonerate:protein2genome:local cds 2 151 . - . LHQN01044749.1 exonerate:protein2genome:local exon 2 151 . - . insertions 0 ; deletions 0 LHQN01044749.1 exonerate:protein2genome:local similarity 2 151 139 - . alignment_id 1 ; Query gi|805825623|ref|XP_012152696.1| ; Align 152 222 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: LHQN01044749.1 Habropoda laboriosa contig44749, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 266 -> 316 Target range: 151 -> 1 267 : LeuAsnLeuProMetArgValSerLeuThrSerPheIleIleSerAsnLeuCysGlnLeuTrpV : 288 |||:::!!! ! !||||||:!!|||.!!!!!|||:!:!!:!!!..!:!! !!|||||||||: LeuSerPheGluTrpArgValAlaLeuAlaCysPheLeuMetThrGlyValSerGlnLeuTrpM 151 : TTATCATTTGAATGGCGCGTTGCTTTGGCGTGCTTCTTGATGACGGGCGTGAGTCAACTATGGA : 88 289 : alPheThrTyrSerCysAspThrMetThrArgGluSerLeuSerValGlyThrAlaMetTyrGl : 309 !!|||||||||||||||||| !:!:|||! !|||||||||!:!:!!!.! !:!!:!:|||! etPheThrTyrSerCysAspCysLeuThrThrGluSerLeuAsnIleAlaGluSerValTyrAl 87 : TGTTCACGTATAGTTGCGATTGCCTAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGC : 25 310 : uAlaProTrpProGlnLeuPro : 316 !.!|||||| !.!.|||||| aGlyProTrpIleAsnLeuPro 24 : TGGACCATGGATAAATTTACCA : 2 vulgar: gi|805825625|ref|XP_012152697.1| 266 316 . LHQN01044749.1 151 1 - 139 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01044749.1 exonerate:protein2genome:local gene 2 151 139 - . gene_id 1 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation . LHQN01044749.1 exonerate:protein2genome:local cds 2 151 . - . LHQN01044749.1 exonerate:protein2genome:local exon 2 151 . - . insertions 0 ; deletions 0 LHQN01044749.1 exonerate:protein2genome:local similarity 2 151 139 - . alignment_id 1 ; Query gi|805825625|ref|XP_012152697.1| ; Align 152 267 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825627|ref|XP_012152698.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: LHQN01044749.1 Habropoda laboriosa contig44749, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 197 -> 245 Target range: 145 -> 1 198 : PheGluArgGlnIleIlePheValPheHisPheLeuGlyThrValCysGlnLeuValMetPheS : 219 |||||| !!!:::!! !!!.!.!! ! !!!.:!! ! !||| !!|||||| !||||||! PheGluTrpArgValAlaLeuAlaCysPheLeuMetThrGlyValSerGlnLeuTrpMetPheT 145 : TTTGAATGGCGCGTTGCTTTGGCGTGCTTCTTGATGACGGGCGTGAGTCAACTATGGATGTTCA : 82 220 : erTyrSerCysAspCysIleIleArgGluSerGluLeuLeuAlaThrAlaAlaPheSerGlyPr : 240 !!|||||||||||||||:!!! !! !|||||| ! !:!!||| !:!!!.!!:!:!!||||| hrTyrSerCysAspCysLeuThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyPr 81 : CGTATAGTTGCGATTGCCTAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACC : 19 241 : oTrpLeuGlnLeuPro : 245 ||||:!!.!.|||||| oTrpIleAsnLeuPro 18 : ATGGATAAATTTACCA : 2 vulgar: gi|805825627|ref|XP_012152698.1| 197 245 . LHQN01044749.1 145 1 - 112 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01044749.1 exonerate:protein2genome:local gene 2 145 112 - . gene_id 1 ; sequence gi|805825627|ref|XP_012152698.1| ; gene_orientation . LHQN01044749.1 exonerate:protein2genome:local cds 2 145 . - . LHQN01044749.1 exonerate:protein2genome:local exon 2 145 . - . insertions 0 ; deletions 0 LHQN01044749.1 exonerate:protein2genome:local similarity 2 145 112 - . alignment_id 1 ; Query gi|805825627|ref|XP_012152698.1| ; Align 146 198 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422524|ref|XP_003493190.1| PREDICTED: uncharacterized protein LOC100748706 [Bombus impatiens] Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 340 -> 382 Target range: 121 -> 247 341 : LysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProGlyLysThrIleLeuAspL : 362 |||:!!|||! ! !||||||||||||.!.|||||| ||| !! !|||||| !|||! !| LysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGlyL 122 : AAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGGTT : 185 363 : euIleMetValIleAlaArgSerAsnValValValHisIleThrAlaGlyLysLeuValHis : 382 ||:!!|||:!!|||:!!||||||!:!:!!|||:!! ! |||||||||||||||!!!|||:!! euValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheValTyr 186 : TGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTATAC : 247 vulgar: gi|350422524|ref|XP_003493190.1| 340 382 . LHQN01048470.1 121 247 + 127 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 122 247 127 + . gene_id 1 ; sequence gi|350422524|ref|XP_003493190.1| ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 122 247 . + . LHQN01048470.1 exonerate:protein2genome:local exon 122 247 . + . insertions 0 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 122 247 127 + . alignment_id 1 ; Query gi|350422524|ref|XP_003493190.1| ; Align 122 341 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|350422514|ref|XP_003493187.1| PREDICTED: uncharacterized protein LOC100748230 [Bombus impatiens] Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 322 -> 381 Target range: 85 -> 247 323 : AsnIlePheValValCysTyrIleGlyGluThrLeuLysGluGlnCysGluLysValGlyGluV : 344 |||||||||:!!:!!|||||||||||||||||| !||| ||||||! ! AsnIlePheIleLeuCysTyrIleGlyGluThrThrLys---------------ValGlyGlyL 86 : AATATATTCATACTTTGTTACATCGGAGAGACTACCAAA---------------GTCGGAGGAA : 134 345 : alValTyrMetThrAsnTrpTyrTyrLeuProTyrLysAspIleLeuAsnLeuIleGlnIleIl : 365 !||||||||||||.!.|||||| ||| !! ! ||| ! !|||..!|||:!!..!||||| ysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGlyLeuValMetIleIl 135 : AAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGGTTTGGTAATGATCAT : 197 366 : eLeuArgSerSerMetMetIleLysIleThrAlaGlyLysLeuValHis : 381 |! !||||||||||||:!!|||||||||||||||||||||!!!|||:!! eSerArgSerSerMetValIleLysIleThrAlaGlyLysPheValTyr 198 : CTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTATAC : 247 vulgar: gi|350422514|ref|XP_003493187.1| 322 381 . LHQN01048470.1 85 247 + 133 M 13 39 G 5 0 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 86 247 133 + . gene_id 1 ; sequence gi|350422514|ref|XP_003493187.1| ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 86 247 . + . LHQN01048470.1 exonerate:protein2genome:local exon 86 247 . + . insertions 0 ; deletions 5 LHQN01048470.1 exonerate:protein2genome:local similarity 86 247 133 + . alignment_id 1 ; Query gi|350422514|ref|XP_003493187.1| ; Align 86 323 39 ; Align 125 341 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825627|ref|XP_012152698.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 83 -> 120 Target range: 309 -> 420 84 : ValGlnAlaValSerValTyrMetValGlyArgThrTyrPheSerLeuAspAsnIleLeuCysI : 105 ..!||||||:!!|||||||||...|||..! ! !|||.!!!!!!..|||||||||... | ThrGlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePhePheI 310 : ACGCAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttttca : 373 106 : leIleAsnLeuHisLeuAlaGlyGlnPheArgMetLeuGlnTyrArg : 120 ||::: !||||||:!!|||||||||||||||!!:|||||||||||| leMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 374 : ttatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: gi|805825627|ref|XP_012152698.1| 83 120 . LHQN01049471.1 309 420 + 108 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 310 420 108 + . gene_id 1 ; sequence gi|805825627|ref|XP_012152698.1| ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 310 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 310 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 310 420 108 + . alignment_id 1 ; Query gi|805825627|ref|XP_012152698.1| ; Align 310 84 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825625|ref|XP_012152697.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 151 -> 189 Target range: 306 -> 420 152 : ValLeuGlnValLeuSerLeuTyrGlnCysAspValGlyTyrIleCysPheAspAsnIlePheC : 173 ::! !|||!.!||||||:!!|||||| !:!!||| !!|||:!!|||||||||||||||||| LeuThrGlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePheP 307 : ctCACGCAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttt : 370 174 : ysValMetCysLeuHisSerAlaGlyGlnPheArgIleLeuGlnTyrArg : 189 :::|||||||||||| !|||||||||||||||||||||||||||||| heIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 371 : tcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: gi|805825625|ref|XP_012152697.1| 151 189 . LHQN01049471.1 306 420 + 149 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 307 420 149 + . gene_id 1 ; sequence gi|805825625|ref|XP_012152697.1| ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 307 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 307 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 307 420 149 + . alignment_id 1 ; Query gi|805825625|ref|XP_012152697.1| ; Align 307 152 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825623|ref|XP_012152696.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 97 -> 145 Target range: 276 -> 420 98 : SerMetSerProTyrPheGluIleMetTyrValLeuGlnValLeuSerLeuCysGlnCysAsnI : 119 ...|||! !||| ::: ::: ::! !|||!.!||||||:!!! !||| !|||: GlnMetIleProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValAsnV 277 : caaATGATTCCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTAACG : 340 120 : leGlyPheThrCysPheAspAsnIlePheCysIleMetCysLeuHisAlaAlaGlyGlnPheAr : 140 !: !!!:! !|||||||||||||||||| |||||||||||||||!.!|||||||||||||| alCysTyrLeuCysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheAr 341 : TGTGTTACCTTTGCTtcgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCG : 403 141 : gIleLeuGlnTyrArg : 145 |||||||||||||||| gIleLeuGlnTyrArg 404 : TATACTACAATACAGA : 420 vulgar: gi|805825623|ref|XP_012152696.1| 97 145 . LHQN01049471.1 276 420 + 141 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 277 420 141 + . gene_id 1 ; sequence gi|805825623|ref|XP_012152696.1| ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 277 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 277 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 277 420 141 + . alignment_id 1 ; Query gi|805825623|ref|XP_012152696.1| ; Align 277 98 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819494|ref|XP_012149881.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: LHQN01049708.1 Habropoda laboriosa contig49708, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 4 -> 51 Target range: 106 -> 315 5 : LeuLeuAlaPheGlyGlnGluHisHisTyrGlnGlyCysIleLysPheVal{Gl} >>>> Ta : 22 |||! !!.!||||||||||||||||||! !|||! !! !||||||!!.|||{||} LeuSerValPheGlyGlnGluHisHisSerGlnValTyrIleLysLeuVal{Gl}++ 107 : TTGTCGGTATTTGGCCAGGAACACCATTCCCAAGTTTACATAAAATTGGTT{GG}gt....... : 162 23 : rget Intron 1 >>>> {y}LeuLeuAspMetIleAspAsnLeuSerIleAlaMetProPh : 36 68 bp {|}|||:!!! !! ||||||||||||||||||.!!|||||||| ++{y}LeuMetValThrIleAspAsnLeuSerIleThrMetProPh 163 : ..................ag{T}CTTATGGTCACAATAGATAATTTGAGCATCACCATGCCATT : 268 37 : eSerLeuValCysIleLysLeuIleValValTrpThrAsnHisGly : 51 |!!!|||||| ||||||||||||:::...|||.!!|||:!!||| eThrLeuValLeuIleLysLeuIleIleThrTrpAlaAsnTyrGly 269 : CACTCTagtgttaattaaattaattattacttgGGCAAATTATGGG : 315 vulgar: gi|805819494|ref|XP_012149881.1| 4 51 . LHQN01049708.1 106 315 + 124 M 17 51 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049708.1 exonerate:protein2genome:local gene 107 315 124 + . gene_id 1 ; sequence gi|805819494|ref|XP_012149881.1| ; gene_orientation + LHQN01049708.1 exonerate:protein2genome:local cds 107 159 . + . LHQN01049708.1 exonerate:protein2genome:local exon 107 159 . + . insertions 0 ; deletions 0 LHQN01049708.1 exonerate:protein2genome:local splice5 160 161 . + . intron_id 1 ; splice_site "GT" LHQN01049708.1 exonerate:protein2genome:local intron 160 227 . + . intron_id 1 LHQN01049708.1 exonerate:protein2genome:local splice3 226 227 . + . intron_id 0 ; splice_site "AG" LHQN01049708.1 exonerate:protein2genome:local cds 228 315 . + . LHQN01049708.1 exonerate:protein2genome:local exon 228 315 . + . insertions 0 ; deletions 0 LHQN01049708.1 exonerate:protein2genome:local similarity 107 315 124 + . alignment_id 1 ; Query gi|805819494|ref|XP_012149881.1| ; Align 107 5 51 ; Align 229 23 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819494|ref|XP_012149881.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: LHQN01049752.1 Habropoda laboriosa contig49752, whole genome shotgun sequence Model: protein2genome:local Raw score: 351 Query range: 49 -> 163 Target range: 54 -> 399 50 : HisGlyValLeuArgAspIleLeuSerThrValGluGluAspCysLysLysTyrAlaValIleA : 71 |||.!!||||||!!!|||||||||||||||:!!||||||||||||:!!|||||||||!.!:!!| HisSerValLeuSerAspIleLeuSerThrMetGluGluAspCysGlnLysTyrAlaAlaValA 55 : CACAGCGTACTTAGTGACATTTTATCAACCATGGAAGAGGATTGTCAGAAATATGCTGCTGTAG : 118 72 : spThrAsnAsnLeuIleProLysThrAlaSerLeuSerValTyrPheThrIleMetValMetSe : 92 ||! !|||!!.|||!!: !!||||||!.!...|||||| |||...||| !!::!!||||| spIleAsnLysLeuMetSerLysThrGlyGlnLeuSerPheTyrLeuThrSerIleIleMetSe 119 : ATATAAATAAGTTGATGTCAAAAACCGGACAgctatctttttatttaacaagcATTATTATGTC : 181 93 : rSerTyrValValSerAlaValPheTyrLeuThrGlyThrLeu<->ThrGlnAspThrAsnAsn : 112 |||||||:!!|||||||||!.!||||||:!!|||||||||:!! |||:::...||| ! rSerTyrMetValSerAlaAlaPheTyrIleThrGlyThrIleGlyPheGlnGluAsnAsnAla 182 : TTCGTATATGGTATCTGCAGCATTTTACATAACTGGTACTATTGgatttcaagaaaataatgCT : 244 113 : AsnSerThrArgArgLeuLeuLeuGlnMetAspLeuProPheAspThrSerGluSerProThrT : 134 ::: !:!!|||..!|||||||||:!!|||||||||||||||! |||||||||||||||!.!| SerValSerArgGluLeuLeuLeuLysMetAspLeuProPheGlyThrSerGluSerProAsnT 245 : TCAGTATCTAGGGAGCTCCTTCTGAAAATGGATTTGCCTTTTGGGACCAGCGAATCGCCGAATT : 310 135 : yrGluLeuValLeuSerAlaGlnPheLeuHisLeuValThrSerAlaLeuThrPheGlyValPh : 155 |||||||||||:!!!!!.!!||| !!||| !! !|||:!!:!!|||||||||||||||||||| yrGluLeuValValThrThrGlnValLeuIleHisValSerAlaAlaLeuThrPheGlyValPh 311 : ACGAACTTGTAGTAACTACACAAGTCCTTATTCACGTATCAGCGGCCTTAACATTCGGTGTATT : 373 156 : eSerAlaLeuLeuValMetValIle : 163 |||||||||||||:!!||||||:!! eSerAlaLeuLeuLeuMetValVal 374 : CAGTGCTCTTCTCTTAATGGTGGTA : 399 vulgar: gi|805819494|ref|XP_012149881.1| 49 163 . LHQN01049752.1 54 399 + 351 M 57 171 G 0 3 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049752.1 exonerate:protein2genome:local gene 55 399 351 + . gene_id 1 ; sequence gi|805819494|ref|XP_012149881.1| ; gene_orientation . LHQN01049752.1 exonerate:protein2genome:local cds 55 399 . + . LHQN01049752.1 exonerate:protein2genome:local exon 55 399 . + . insertions 3 ; deletions 0 LHQN01049752.1 exonerate:protein2genome:local similarity 55 399 351 + . alignment_id 1 ; Query gi|805819494|ref|XP_012149881.1| ; Align 55 50 171 ; Align 229 107 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819496|ref|XP_003707222.2| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: LHQN01049752.1 Habropoda laboriosa contig49752, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 0 -> 42 Target range: 273 -> 399 1 : MetAspLeuProValAlaThrLysGluThrProValTyrGluLeuValLeuThrAlaGlnPheL : 22 |||||||||||| !!!.!|||!..|||:!!||| !||||||||||||:!!|||.!!||| !!| MetAspLeuProPheGlyThrSerGluSerProAsnTyrGluLeuValValThrThrGlnValL 274 : ATGGATTTGCCTTTTGGGACCAGCGAATCGCCGAATTACGAACTTGTAGTAACTACACAAGTCC : 337 23 : euHisGlnThrSerThrAlaPheSerPheGlyThrPheSerAlaLeuLeuLeuMetValVal : 42 || !!!...!|||.!!|||!!.!!!||||||..!||||||||||||||||||||||||||| euIleHisValSerAlaAlaLeuThrPheGlyValPheSerAlaLeuLeuLeuMetValVal 338 : TTATTCACGTATCAGCGGCCTTAACATTCGGTGTATTCAGTGCTCTTCTCTTAATGGTGGTA : 399 vulgar: gi|805819496|ref|XP_003707222.2| 0 42 . LHQN01049752.1 273 399 + 127 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049752.1 exonerate:protein2genome:local gene 274 399 127 + . gene_id 1 ; sequence gi|805819496|ref|XP_003707222.2| ; gene_orientation . LHQN01049752.1 exonerate:protein2genome:local cds 274 399 . + . LHQN01049752.1 exonerate:protein2genome:local exon 274 399 . + . insertions 0 ; deletions 0 LHQN01049752.1 exonerate:protein2genome:local similarity 274 399 127 + . alignment_id 1 ; Query gi|805819496|ref|XP_003707222.2| ; Align 274 1 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819494|ref|XP_012149881.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 247 Query range: 271 -> 338 Target range: 824 -> 1194 272 : SerLysLeuIleGlyAspThrAlaTyrGluSerAlaTrpTyrAspLeuArgProSerGluAs : 292 |||:!!|||||||||:!!||||||||||||! ! !||||||||||||||| !!!!!|||!: SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSe 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAG : 885 293 : nArgLeuLeuIleLeuLeuIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysP : 313 !!:!|||||||||! !:!!||||||||||||||||||||||||||||||||||||||||||| rGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysP 886 : CCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaat : 948 314 : heSerSerProSerLeuGluSerPheThrSer >>>> Target Intron 1 >>>> I : 324 |||||||| !||||||||||||||||||:!! 169 bp | heSerSerLeuSerLeuGluSerPheThrAla++ ++I 949 : tttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.........................agA : 1150 325 : leMetLysValSerAlaSerTyrIleSerValLeuLeuAlaMet : 338 |||||||||||||||||||||||||||||||||||||||||:!! leMetLysValSerAlaSerTyrIleSerValLeuLeuAlaVal 1151 : TCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTG : 1194 vulgar: gi|805819494|ref|XP_012149881.1| 271 338 . LHQN01050112.1 824 1194 + 247 M 52 156 5 0 2 I 0 165 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 1194 247 + . gene_id 1 ; sequence gi|805819494|ref|XP_012149881.1| ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 825 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1194 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1194 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 1194 247 + . alignment_id 1 ; Query gi|805819494|ref|XP_012149881.1| ; Align 825 272 156 ; Align 1150 324 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819496|ref|XP_003707222.2| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 208 Query range: 150 -> 217 Target range: 824 -> 1194 151 : SerLysLeuIleCysGluThrAlaTyrLysCysLeuTrpTyrAspLeuHisProAsnGluSe : 171 |||:!!|||||| !!.!.|||||||||:!!! !|||||||||||||||!.! !!!.!||||| SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSe 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAG : 885 172 : rGlnLeuLeuValLeuProIleLeuArgSerGlnLysGlyLeuLysLeuThrPheGlyLysP : 192 ||||||||||:!!! ! !|||||||||||||||||||||!!!! !!..||||||||||||| rGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysP 886 : CCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaat : 948 193 : heSerSerLeuSerLeuGluSerPheMetSer >>>> Target Intron 1 >>>> M : 203 ||||||||||||||||||||||||||! !:!! 169 bp ! heSerSerLeuSerLeuGluSerPheThrAla++ ++I 949 : tttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.........................agA : 1150 204 : etMetLysAlaSerAlaSerTyrMetSerValLeuLeuAlaMet : 217 !:||||||!.!||||||||||||!!:|||||||||||||||:!! leMetLysValSerAlaSerTyrIleSerValLeuLeuAlaVal 1151 : TCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTG : 1194 vulgar: gi|805819496|ref|XP_003707222.2| 150 217 . LHQN01050112.1 824 1194 + 208 M 52 156 5 0 2 I 0 165 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 1194 208 + . gene_id 1 ; sequence gi|805819496|ref|XP_003707222.2| ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 825 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1194 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1194 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 1194 208 + . alignment_id 1 ; Query gi|805819496|ref|XP_003707222.2| ; Align 825 151 156 ; Align 1150 203 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805818116|ref|XP_003707057.2| PREDICTED: odorant receptor Or1-like isoform X1 [Megachile rotundata] Target: KQ414583.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold34, whole genome shotgun sequence Model: protein2genome:local Raw score: 1214 Query range: 1 -> 411 Target range: 618952 -> 620817 2 : AspPheMetGluAsnArgThrLysLeuLysLysIleLysProAsnLysHisLeuGluA : 21 !!:||| ! ...:::||||||||||||||||||||||||||||||||||||:::| GluPheAlaGlyLysGlnThrLysLeuLysLysIleLysProAsnLysHisLeuLysA 618953 : GAGTTTGCGggaaaacaaacgaaattgaaaaagatcAAACCTAacaaacatttgaaaa : 619010 22 : snSerLeuSerIleIleTyrTyrMetGlyMetTrpProSerGluSerLysTyrLysAr : 40 || ::: :::...|||||| !|||!!:||||||.!!:!!! !||||||||||| snCysMetLeuLeuPheTyrTyrAlaGlyIleTrpProGlyGlnMetLysTyrLysAr 619011 : attgtatgttattattttactatGCGGGAATATGGCCTGGACAGATGAAATATAAGCG : 619067 41 : gLeuTyrMetLeuTyrThrValPheSerPheMetPheLeuLeuGlyIlePheLeuAla : 59 ||||||| |||||| !:!! !||||||:!!.!!||||||!.!.!! !|||!.! gLeuTyrTyrLeuTyrGlyIleSerSerPheValIleLeuLeuAlaPheThrLeuVal 619068 : TCTCTATTATCTGTATGGAATTAGCAGTTTTGTGATTTTATTGGCATTTACTCTTGTT : 619124 60 : SerGlnIleAlaTyrIleIleValAsnArgLysSerValAspLysIleIleAlaGlyA : 79 !!!:!!.!!||||||:!! !|||:!! !! !..! !! !:!!|||!!::!!|||| ThrGluPheAlaTyrLeuCysValHisTrpGlyAspTyrAlaGluIleMetSerGlyA 619125 : ACCGAATTCGCGTATCTTTGTGTACATTGGGGAGACTATGCCGAAATAATGTCCGGTG : 619184 80 : laThrLeuLeuMetThrAsnAlaThrHisAlaTyrLys >>>> Target Intron : 92 |||||:!!!!!||||||||| !:!!:!!..! ||| 312 bp laThrIlePheMetThrAsnTyrSerTyrCysLeuLys++ 619185 : CAACTATTTTTATGACAAATTATTCATATTGTCTGAAGgt.................. : 619225 93 : 1 >>>> AlaIleLeuIleIleCysHisHisLysArgIleLysAspLeuThrAspI : 108 !.!|||:!!|||:!! !..!.!||||||||||||||||||! !:!!| ++ValIleValIleValLeuArgArgLysArgIleLysAspLeuIleAsnI 619226 : .......agGTAATTGTTATCGTTCTACGACGTAAACGTATCAAAGATCTTATAAATA : 619583 109 : leThrArgSerGluThrPheIleGlnAspAsnGlyLysTyrGluLysIleValArgHi : 127 |||||..!.!!:!! !||||||!:::!!|||! !|||||||||:::||||||! !:! leThrGluGlyLysLeuPheIleArgAsnAsnAspLysTyrGluArgIleValThrTy 619584 : TAACCGAGGGAAAACTGTTTATCCGCAATAACGATAAATACGAACGTATCGTAACGTA : 619640 128 : sTyrThrTrpGlnGlyValPheHisHisIleAlaTyrGlnSerPheGlyLeuMetAla : 146 !|||||||||||||||:!!||||||||||||.!!|||||||||||||||:!!!!:||| rTyrThrTrpGlnGlyIlePheHisHisIleThrTyrGlnSerPheGlyIleIleAla 619641 : TTACACTTGGCAAGGAATTTTCCATCATATCACTTATCAAAGCTTCGGTATCATAGCT : 619697 147 : ValIleSerTrpGlyValThrProValLeuAsnLeuLeuThrGlnArgSerLysGluL : 166 ||||||! !|||..! !||| !!|||:!!||||||:!!! !!:!! !! !:!! | ValIlePheTrpSerCysThrAlaValValAsnLeuMetLysArgThrTyrGlnLeuL 619698 : GTAATCTTCTGGTCATGCACAGCAGTTGTAAATCTGATGAAACGGACGTATCAACTTT : 619757 167 : euSerMetGluGlyTrpTyrProTyrAsnThrSerSerThrProAlaPheGluIleTh : 185 ||! !!!::!!!.!|||||||||||||||..!!!!! !:!!||||||!::|||...|| euLeuIleLysAlaTrpTyrProTyrAsnValThrIleSerProAlaTyrGluPheTh 619758 : TATTGATAAAAGCATGGTATCCTTATAATGTAACAATTTCGCCAGCTTAtgaatttac : 619814 186 : rSerSerTyrGlnAlaValAlaIlePheLeuCysCysIleAsnAsnValAlaIleAsp : 204 | :::|||!.!|||!.!:!! !::: |||||||||||||||||||||||| rIleLeuHisGlnValValGlyValThrValAsnCysIleAsnAsnValAlaIleAsp 619815 : tattttacatCAAGTCGTGGGTGTCACTGtaaattgtattaataatGTAGCAATAGAT : 619871 205 : ThrLeuIleThrGlyLeuIleThrIleAlaCysCysGlnLeuAlaIleLeuSerSerA : 224 |||!!!|||||||||!!!|||! !! !|||||||||||||||.!!:!!||||||! !| ThrPheIleThrGlyPheIleIleThrAlaCysCysGlnLeuThrLeuLeuSerTyrA 619872 : ACTTTTATAACAGGTTTTATAATAACTGCTTGTTGCCAATTGACACTCTTAAGTTATA : 619931 225 : snIleAlaSerLeuAsnCysAlaGluAsnThrGluProIleGlyIleAsnAsnAsnTh : 243 |||||:!!|||:!!:!!! !! !! !.!.! !||| !:!!!.!! !.!:!!:!!! snIleSerSerIleHisTyrGluAlaGluLysGluPheValAlaArgThrAspAspIl 619932 : ACATCTCTTCGATACACTATGAAGCGGAGAAAGAATTTGTTGCTAGGACTGATGATAT : 619988 244 : rAspLeuGluIleSerThrSerLysAsnTyrAsnLysLeuTyrGluAspLeuLysSer : 262 !..! !!!:! !||||||||||||!.!||||||:!!|||||||||||||||||| eSerAlaAspLysSerThrSerLysThrTyrAsnGlnLeuTyrGluAspLeuLysIle 619989 : CAGTGCCGATAAATCTACTTCAAAAACTTACAACCAATTGTATgaggatttgaaaatt : 620045 263 : CysValGluHisSerAsnMetIlePhe{As} >>>> Target Intron 2 >>>> : 272 |||:::|||||||||!..:!!|||! !{||} 105 bp CysIleGluHisSerArgLeuIleSer{As}++ 620046 : tgcattgaaCATAGTAGACTGATATCC{GA}gt......................... : 620079 273 : {p}PheSerLysGlnIleGlnAspThrPheGlyThrValIlePheLeuGlnPheLe : 290 {|}|||:!!::!:!!||||||||||||||||||||||||||||||!!!|||.!.|| ++{p}PheAlaArgLysIleGlnAspThrPheGlyThrValIlePhePheGlnLeuLe 620080 : ag{T}TTCGCACGAAAGATTCAAGATACATTCGGTACTGTGATATTTTTTCAACTGCT : 620234 291 : uValAsnCysIleIleIleCysLeuIleAlaPheAsnIleAlaGln >>>> Targe : 306 |||||||||||||! !:!!||||||:!!|||!:!||||||:!!||| uValAsnCysIleThrValCysLeuLeuAlaTyrAsnIleSerGln++ 620235 : GGTAAATTGTATAACCGTTTGTTTACTTGCATACAATATATCACAGgt.......... : 620284 307 : t Intron 3 >>>> MetLysAspTyrIleProTyrValLeuCysGlyMetLeuMe : 319 81 bp :!!||| !!|||:!!! !! !! !|||! !||||||!!!|| ++LeuLysTyrTyrValLeuSerAspLeuPheGlyMetPheMe 620285 : ...............agCTGAAATATTACGTTCTATCCGATTTGTTTGGTATGTTTAT : 620402 320 : tTyrMetCysCysMetThrTyrGlnIlePheIleTyrCysTrpHisGlyAsnGluLeu : 338 |:!!|||||||||||||||||||||||||||||||||||||||||||||||||||||| tHisMetCysCysMetThrTyrGlnIlePheIleTyrCysTrpHisGlyAsnGluLeu 620403 : GCATATGTGCTGTATGACATATCAAATCTTTATATATTGCTGGCACGGGAACGAACTG : 620459 339 : TyrLeuHis >>>> Target Intron 4 >>>> SerMetAsnValThrPheSe : 348 ||||||||| 68 bp |||||||||:!! !|||:! TyrLeuHis++ ++SerMetAsnIleCysPheAl 620460 : TATCTTCATgt.........................agAGCATGAATATATGTTTTGC : 620557 349 : rAlaTyrAlaAsnAsnTrpTrpTyrAsnSerLysAspPheLysGlnAlaIleCysIle : 367 !|||||| !||||||||||||:!!|||!!!||||||||||||!:!|||:!: !:!! aAlaTyrMetAsnAsnTrpTrpHisAsnThrLysAspPheLysArgAlaLeuLeuVal 620558 : CGCTTATATGAATAATTGGTGGCATAATACCAAGGATTTTAAACGAGCCTTGCTCGTT : 620614 368 : IleMetValArgValGlnGlnProLeuIleLeuThrAlaGlyAsnValMetGlnLeuS : 387 :!!||| !!:!!.!|||!:!|||:!!|||||||||!.!||||||:!!|||:!!|||| ValMetSerLysAlaGlnArgProIleIleLeuThrValGlyAsnIleMetGluLeuS 620615 : GTAATGTCAAAAGCTCAACGACCTATTATTTTAACTGTTGGAAATATTATGGAATTAT : 620674 388 : erLeuGlnThrPheValArg >>>> Target Intron 5 >>>> IleLeuArg : 396 |||||:!!!.!||||||! ! 69 bp ||||||||| erLeuGluAsnPheValLeu++ ++IleLeuArg 620675 : CTTTAGAGAATTTCGTTCTAgt.........................agATTCTACGT : 620770 397 : MetSerTyrSerIlePheThrValLeuGlnSerSerAlaAsnSer : 411 ! ||||||||||||||||||||||||:!!!!!|||.!!|||:!! ThrSerTyrSerIlePheThrValLeuLysThrSerThrAsnAla 620771 : ACATCGTATTCCATTTTTACCGTTTTAAAAACTTCTACAAACGCT : 620817 vulgar: gi|805818116|ref|XP_003707057.2| 1 411 . KQ414583.1 618952 620817 + 1214 M 90 270 5 0 2 I 0 308 3 0 2 M 180 540 S 0 2 5 0 2 I 0 101 3 0 2 S 1 1 M 33 99 5 0 2 I 0 77 3 0 2 M 36 108 5 0 2 I 0 64 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414583.1 exonerate:protein2genome:local gene 618953 620817 1214 + . gene_id 1 ; sequence gi|805818116|ref|XP_003707057.2| ; gene_orientation + KQ414583.1 exonerate:protein2genome:local cds 618953 619222 . + . KQ414583.1 exonerate:protein2genome:local exon 618953 619222 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local splice5 619223 619224 . + . intron_id 1 ; splice_site "GT" KQ414583.1 exonerate:protein2genome:local intron 619223 619534 . + . intron_id 1 KQ414583.1 exonerate:protein2genome:local splice3 619533 619534 . + . intron_id 0 ; splice_site "AG" KQ414583.1 exonerate:protein2genome:local cds 619535 620076 . + . KQ414583.1 exonerate:protein2genome:local exon 619535 620076 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local splice5 620077 620078 . + . intron_id 2 ; splice_site "gt" KQ414583.1 exonerate:protein2genome:local intron 620077 620181 . + . intron_id 2 KQ414583.1 exonerate:protein2genome:local splice3 620180 620181 . + . intron_id 1 ; splice_site "AG" KQ414583.1 exonerate:protein2genome:local cds 620182 620281 . + . KQ414583.1 exonerate:protein2genome:local exon 620182 620281 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local splice5 620282 620283 . + . intron_id 3 ; splice_site "GT" KQ414583.1 exonerate:protein2genome:local intron 620282 620362 . + . intron_id 3 KQ414583.1 exonerate:protein2genome:local splice3 620361 620362 . + . intron_id 2 ; splice_site "AG" KQ414583.1 exonerate:protein2genome:local cds 620363 620470 . + . KQ414583.1 exonerate:protein2genome:local exon 620363 620470 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local splice5 620471 620472 . + . intron_id 4 ; splice_site "GT" KQ414583.1 exonerate:protein2genome:local intron 620471 620538 . + . intron_id 4 KQ414583.1 exonerate:protein2genome:local splice3 620537 620538 . + . intron_id 3 ; splice_site "AG" KQ414583.1 exonerate:protein2genome:local cds 620539 620694 . + . KQ414583.1 exonerate:protein2genome:local exon 620539 620694 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local splice5 620695 620696 . + . intron_id 5 ; splice_site "GT" KQ414583.1 exonerate:protein2genome:local intron 620695 620763 . + . intron_id 5 KQ414583.1 exonerate:protein2genome:local splice3 620762 620763 . + . intron_id 4 ; splice_site "AG" KQ414583.1 exonerate:protein2genome:local cds 620764 620817 . + . KQ414583.1 exonerate:protein2genome:local exon 620764 620817 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local similarity 618953 620817 1214 + . alignment_id 1 ; Query gi|805818116|ref|XP_003707057.2| ; Align 618953 2 270 ; Align 619535 92 540 ; Align 620183 273 99 ; Align 620363 306 108 ; Align 620539 342 156 ; Align 620764 394 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805809121|ref|XP_012146759.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414601.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold45, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 839 Query range: 0 -> 310 Target range: 1071593 -> 1068213 1 : MetGlyAspLeuGluLeuMetValGluAsnIleLeuAspAsnThrLeuGlyThrTh : 19 :!:|||:!!|||! !||||||||||||||||||:!! !!||||||:!! !..!|| LeuGlyAsnLeuValLeuMetValGluAsnIleIleHisAsnThrIleIleValTh 1071593 : TTAGGAAATCTAGTGTTGATGGTGGAGAATATAATTCACAACACTATCATCGTTAC : 1071539 20 : rThrTyrLeuMetLeuPheLeuPheArgPheSerLysMetIleLysHisValIleA : 38 ||||!:!!!!||||||||||||.!!|||! !!:!|||:!!||| !||||||||| rThrPhePheMetLeuPheLeuLeuArgCysAsnLysLeuIleAlaHisValIleI 1071538 : TACTTTTTTCATGTTGTTTCTCCTTCGATGCAATAAATTGATCGCGCATGTGATCA : 1071482 39 : laThrMetLysArgGluLeuAlaGluAspAspPheArgAsnAsnGluGluLysGln : 56 !|||:!!|||!:!|||:!!|||||| ! ! |||||||||!!.!!:|||! !.!. leThrValLysGlnGluIleAlaGluIleLysPheArgAsnLysAspGluMetAsp 1071481 : TCACCGTGAAACAAGAGATAGCTGAGATCAAGTTTAGGAATAAAGACGAAATGGAT : 1071428 57 : LeuTyrLeuThrTyrAsnIleIleSerAspAsnPheGlyArgTyrAlaValArgTh : 75 |||||||||:!!|||:!!! !|||:!!|||!!.|||||||||||||||||| !|| LeuTyrLeuSerTyrHisSerIleAlaAspLysPheGlyArgTyrAlaValSerTh 1071427 : TTGTATTTGTCGTATCACAGTATTGCTGACAAATTCGGCAGGTACGCCGTGTCGAC : 1071371 76 : rThrAlaValIleValValMetTrpTyrSerThrProMetLeuLys{Le} >>>> : 91 ||||||||||:!!!.!:!!:!: !|||! !|||||||||||| ! {:!} rThrAlaValValAlaIleLeuLeuTyrLeuThrProMetLeuHis{Il}++ 1071370 : AACCGCGGTTGTAGCGATTCTTCTGTATTTGACGCCTATGTTGCAT{AT}gt.... : 1071319 92 : Target Intron 1 >>>> {u}LeuLysGlyThrGlyAsnGlyThrGlyMet : 101 289 bp {!}:!!..!||| !.!!|||! !||| !!:!: +-{e}ValSerGlyGlnSerAsnGluThrArgVal 1071318 : .....................ac{T}GTTTCAGGGCAGAGTAACGAAACGAGAGTC : 1071004 102 : TyrArgLeuProPheArgIleHisSerPhePheAspTyrGluAspAsnPheLysTy : 120 |||..!|||||||||! !! !:!! ! !!.!! |||:!! !!:!!|||::: TyrGluLeuProPheProSerTyrHisValLeuProTyrLysHisAspPheArgSe 1071003 : TACGAATTGCCCTTCCCTAGTTACCATGTTCTCCCGTACAAGCATGACTTTCGCAG : 1070947 121 : rTyrMetLeuLeuTyrAlaTyrGluLeuProIleMetCysIleGlyIlePheHisI : 139 !|||!!::!!:!!||||||!:!:!! !|||:!!|||! :!:|||:!: !|||| rTyrIleIleMetTyrAlaPheGlnGlyProLeuMetLeuValGlyLeuAsnHisI 1070946 : TTACATTATCATGTACGCGTTCCAGGGTCCGCTTATGTTGGTGGGGTTGAACCACA : 1070890 140 : leThrSerIleSerLeuLeuLeuSerLeuValLeuHisValCysGlyLysPheSer : 157 |||||!!!:!!||||||:!!:!!||||||||||||||||||||||||||||||||| leThrThrLeuSerLeuIleValSerLeuValLeuHisValCysGlyLysPheSer 1070889 : TAACCACCCTCAGTTTAATAGTTAGCCTGGTGCTGCATGTTTGCGGTAAATTCTCG : 1070836 158 : IleLeuSerTyrArgIleGlnAsnIleValGluAspSerGluAsnGlyTyrGlnSe : 176 ||||||||||||||||||||||||||| ...|||:!!:!!..!! .!.!! IleLeuSerTyrArgIleGlnAsnIleGlnIleGlnSerLysAspAsnLeuAsnAr 1070835 : ATCTTGTCGTATCgtatacaaaatattcaaatccaGTCGAAAGATAATTTAAACAG : 1070779 177 : rLysValLysGluLeuValGluArgHisValGluLeuIle{Me} >>>> Targe : 190 !|||:!!:!!!!:!!!||| !|||:!!:!!||||||{:!} 1 gLysIleGluAspPheValThrAspHisIleLysLeuIle{Le}-+ 1070778 : GAAAATCGAGGATTTCGTGACCGATCACATCAAATTGATA{TT}at.......... : 1070733 191 : t Intron 2 >>>> {t}ThrAlaAsnAlaLeuAsnSerAlaLeuGlnLeuIle : 202 999 bp {:}! !||||||:!!:!!||||||||||||:!!:!!||| ++{u}MetAlaAsnSerIleAsnSerAlaLeuGluValIle 1070732 : ...............ag{A}ATGGCGAACTCCATCAATTCAGCACTGGAAGTTATC : 1068702 203 : LeuAlaLeuGluLeuLeuGlnThrSerValArgMetAlaValLeuMetTyrThrIl : 221 ||| !:!!!!:||| !|||||||||:!!|||||||||||||||!!:|||!:! LeuLeuIleAspLeuThrGlnThrSerIleArgMetAlaValLeuIleTyrSerAl 1068701 : CTTCTGATCGATCTGACGCAAACAAGCATAAGAATGGCTGTTCTTATATACAGTGC : 1068645 222 : eLeuLeu >>>> Target Intron 3 >>>> LeuProSerAspAspLeuVa : 230 !|||||| 97 bp |||..!! :!!||||| aLeuLeu++ ++SerProGluAlaAsnLeuVa 1068644 : CCTTCTAgt.........................agagtCCCGAAGCAAATCTCGT : 1068521 231 : lAspIlePheThrTyrGlyLeuTyrValMetIleValThrLeuMetLeuTyrLeuT : 249 |! !! |||||||||! !||||||:!!:!!:!!||||||! !:!!|||||||||| lGlyThrPheThrTyrValLeuTyrIleLeuLeuValThrSerLeuLeuTyrLeuT 1068520 : GGGCACGTTCACATACGTTTTGTACATTTTGTTAGTCACGTCGTTGTTATACTTGT : 1068464 250 : yrSerTyrIleGlyGluGlnLeuGlnTyrGlu >>>> Target Intron 4 > : 260 |||||!:!|||||||||!:!||| !|||||| 65 bp yrSerPheIleGlyGluArgLeuAlaTyrGlu++ 1068463 : ACTCGTTCATAGGTGAACGATTGGCATACGAGgt...................... : 1068429 261 : >>> SerThrLysValAsnAspAlaTyrTyrAspAlaAsnTrpLeuLysLeuSer : 276 ||||||||||||!.!!!:||||||||||||.!!.!.|||! !:!!|||||| ++SerThrLysValThrGluAlaTyrTyrAspThrGluTrpGlnGluLeuSer 1068428 : ...agtCGACGAAAGTGACCGAAGCGTACTATGATACCGAGTGGCAAGAATTATCG : 1068318 277 : ThrArgAspGlnLysLeuLeuLeuTyrCysMetCysAsnGlyArgArgThrLeuSe : 295 ..!|||:!!||||||||||||||| !..!||| !!::!|||||||||||||||! ValArgAsnGlnLysLeuLeuLeuLeuAlaMetArgSerGlyArgArgThrLeuTy 1068317 : GTCCGTAATCAAAAGCTGTTGCTTCTTGCCATGCGTTCTGGACGAAGAACGTTATA : 1068261 296 : rLeuThrAlaGlyLysPheTyrSerPheSerLeuPheGlyPheIle : 310 !||||||||||||||| ! |||!:!|||||||||!:!||||||||| rLeuThrAlaGlyLysValTyrAsnPheSerLeuTyrGlyPheIle 1068260 : CCTTACAGCTGGAAAAGTGTACAATTTCTCCTTGTACGGTTTTATC : 1068214 vulgar: gi|805809121|ref|XP_012146759.1| 0 310 . KQ414601.1 1071593 1068213 - 839 M 90 270 S 0 2 5 0 2 I 0 285 3 0 2 S 1 1 M 98 294 S 0 2 5 0 2 I 0 1995 3 0 2 S 1 1 M 33 99 5 0 2 I 0 93 3 0 2 M 36 108 5 0 2 I 0 61 3 0 2 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414601.1 exonerate:protein2genome:local gene 1068214 1071593 839 - . gene_id 1 ; sequence gi|805809121|ref|XP_012146759.1| ; gene_orientation + KQ414601.1 exonerate:protein2genome:local cds 1071322 1071593 . - . KQ414601.1 exonerate:protein2genome:local exon 1071322 1071593 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local splice5 1071320 1071321 . - . intron_id 1 ; splice_site "GT" KQ414601.1 exonerate:protein2genome:local intron 1071033 1071321 . - . intron_id 1 KQ414601.1 exonerate:protein2genome:local splice3 1071033 1071034 . - . intron_id 0 ; splice_site "AC" KQ414601.1 exonerate:protein2genome:local cds 1070736 1071032 . - . KQ414601.1 exonerate:protein2genome:local exon 1070736 1071032 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local splice5 1070734 1070735 . - . intron_id 2 ; splice_site "AT" KQ414601.1 exonerate:protein2genome:local intron 1068737 1070735 . - . intron_id 2 KQ414601.1 exonerate:protein2genome:local splice3 1068737 1068738 . - . intron_id 1 ; splice_site "AG" KQ414601.1 exonerate:protein2genome:local cds 1068637 1068736 . - . KQ414601.1 exonerate:protein2genome:local exon 1068637 1068736 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local splice5 1068635 1068636 . - . intron_id 3 ; splice_site "GT" KQ414601.1 exonerate:protein2genome:local intron 1068540 1068636 . - . intron_id 3 KQ414601.1 exonerate:protein2genome:local splice3 1068540 1068541 . - . intron_id 2 ; splice_site "ag" KQ414601.1 exonerate:protein2genome:local cds 1068432 1068539 . - . KQ414601.1 exonerate:protein2genome:local exon 1068432 1068539 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local splice5 1068430 1068431 . - . intron_id 4 ; splice_site "GT" KQ414601.1 exonerate:protein2genome:local intron 1068367 1068431 . - . intron_id 4 KQ414601.1 exonerate:protein2genome:local splice3 1068367 1068368 . - . intron_id 3 ; splice_site "ag" KQ414601.1 exonerate:protein2genome:local cds 1068214 1068366 . - . KQ414601.1 exonerate:protein2genome:local exon 1068214 1068366 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local similarity 1068214 1071593 839 - . alignment_id 1 ; Query gi|805809121|ref|XP_012146759.1| ; Align 1071594 1 270 ; Align 1071032 92 294 ; Align 1068736 191 99 ; Align 1068540 224 108 ; Align 1068367 260 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795911|ref|XP_012143140.1| PREDICTED: odorant receptor 49a-like [Megachile rotundata] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 220 -> 326 Target range: 1306832 -> 1305882 221 : AlaValLeuHisMetAspArgProAsnGluPheIleAlaIleLeuMetPheMetCy : 239 ||||||!!! !!! ||| !! !!.!!!:.!!:!: ! !:!! !:!:!!! AlaValPheAspAsnAspAlaArgThrAspIleLeuLysTyrValSerTyrLeuSe 1306832 : GCGGTTTTCGATAACGACGCCCGTACCGATATTCTGAAATACGTATCTTATTTGTC : 1306778 240 : sGlyGlnGlnPheHisGlnPheAlaLeuCysLeuProGlyGlnValLeuIleAspA : 258 !..! !!!.!!.! !!. !! !||||||||||||:!!:!!|||:!!.!.. rSerIleTrpLeuGlnLeuLeuLeuTrpCysLeuProGlyGluIleLeuValGlnG 1306777 : CTCGATTTGGTTGCAACTTTTGTTATGGTGTTTGCCCGGTGAAATTCTCGTTCAAG : 1306721 259 : rgSerLeuAspLeuIleAsnAspIleTyr<->SerSerLysTrpTyrGlnThrPro : 275 .!||||||!!::!! !:!!! :!!||| !:! ! !||||||.!. !||| luSerLeuGluIleGlyHisValValTyrLeuAsnValProTrpTyrAsnLeuPro 1306720 : AGAGTTTAGAAATAGGACACGTAGTCTACTTAAATGTACCATGGTACAATTTGCCG : 1306667 276 : ValLysTyrGlnArgThrIleLeuThrMetGlnIleArgCysSerLysAlaCysLy : 294 !! |||||||||! !:!!! !! !||| :!!|||.....!:!! !|||!. ProIleTyrGlnArgLysLeuCysMetMetIleLeuArgAlaGlnGlnTyrCysSe 1306666 : CCAATTTACCAGAGAAAACTTTGCATGATGATCCTTAGGGCACAACAATATTGCAG : 1306610 295 : sLeuThrAlaGlyGlyPheTyrGluMetAsnMetGluAsnPheGlyAla >>>> : 311 .:!!|||||| ! !||| !:!!::!!!:.!.!..!!. !::! rIleThrAlaLeuThrPheArgThrLeuSerIleHisThrLeuThrSer++ 1306609 : CATCACGGCATTAACGTTTCGAACGTTGTCTATTCACACGTTAACGAGCgt..... : 1306557 312 : Target Intron 1 >>>> IleIleLysThrSerValSerTyrPheThrValL : 322 629 bp :!!.!!!!.|||:!!!.!||||||||||||:!!| ++ValPheAsnThrAlaAlaSerTyrPheThrLeuL 1306556 : ....................agGTATTCAATACAGCCGCTTCATATTTCACTTTGC : 1305897 323 : euLeuSerLeuArg : 326 ||! !..!:!!!:! euArgGlnMetGln 1305896 : TGCGACAAATGCAA : 1305883 vulgar: gi|805795911|ref|XP_012143140.1| 220 326 . KQ414608.1 1306832 1305882 - 123 M 47 141 G 0 3 M 43 129 5 0 2 I 0 625 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1305883 1306832 123 - . gene_id 1 ; sequence gi|805795911|ref|XP_012143140.1| ; gene_orientation + KQ414608.1 exonerate:protein2genome:local cds 1306560 1306832 . - . KQ414608.1 exonerate:protein2genome:local exon 1306560 1306832 . - . insertions 3 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1306558 1306559 . - . intron_id 1 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1305931 1306559 . - . intron_id 1 KQ414608.1 exonerate:protein2genome:local splice3 1305931 1305932 . - . intron_id 0 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1305883 1305930 . - . KQ414608.1 exonerate:protein2genome:local exon 1305883 1305930 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1305883 1306832 123 - . alignment_id 1 ; Query gi|805795911|ref|XP_012143140.1| ; Align 1306833 221 141 ; Align 1306689 268 129 ; Align 1305931 311 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793961|ref|XP_012142611.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 115 -> 180 Target range: 204020 -> 204215 116 : GluArgValLeuProPheLysMetTyrLeuAsnValProIleGlnAlaThrProTyrP : 135 :!!!:!:!!!!!||| ! ||| |||...! !|||||||||| LysLysLeuPheProValProThrTyrTyrIleTyrAspIleSerGluThrProTyrP 204021 : AAAAAGCTTTTTCCGGTGCCaacttattatatttacgatataTCTGAAACTCCATATT : 204078 136 : heGluIleAlaTyrIleThrGlnValLeuAlaLeuCysProValGlyPheSerTyrPh : 154 |||||||| !!:!:!! !|||:!! !.!!||| !:!!!.!.!!!!!|||.! heGluIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIl 204079 : TTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACAT : 204135 155 : eSerLeuAspAsnValLeuCysIleIleAsnLeuHisIleAlaGlyGlnPheArgIle : 173 !.!!:!!|||||| !!!!! ! |||:!:! !|||||||||..!||||||!!...!! ! eGlyValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsn 204136 : TGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAAT : 204192 174 : LeuGlnTyrArgLeuSerAsp : 180 |||!:: ||||||:!!:!! LeuArgThrArgLeuAlaAsn 204193 : CTTCGTACACGACTTGCAAAC : 204215 vulgar: gi|805793961|ref|XP_012142611.1| 115 180 . KQ414617.1 204020 204215 + 111 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204021 204215 111 + . gene_id 1 ; sequence gi|805793961|ref|XP_012142611.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204021 204215 . + . KQ414617.1 exonerate:protein2genome:local exon 204021 204215 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204021 204215 111 + . alignment_id 1 ; Query gi|805793961|ref|XP_012142611.1| ; Align 204021 116 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793979|ref|XP_012142615.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 251 -> 317 Target range: 204020 -> 204218 252 : GluArgIleLeuProLeuAspValTrpPheAsnPheProSerThrGluThrProTyrT : 271 :!!!:!:!!!!!|||:!! ...:::::: ::: :!!||||||||||||! LysLysLeuPheProValProThrTyrTyrIleTyrAspIleSerGluThrProTyrP 204021 : AAAAAGCTTTTTCCGGTGCCaacttattatatttacgatataTCTGAAACTCCATATT : 204078 272 : yrGluPheMetPheThrPheGlnIleIleSerValPheLeuValGlyThrAlaTyrVa : 290 :!|||.!.|||||| !.!!|||!!: !!!!:!! ! |||:!!!.! !..!|||:! heGluIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIl 204079 : TTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACAT : 204135 291 : lSerProAspThrLeuLeuCysIleLeuAsnLeuHisValIleTyrGlnPheArgMet : 309 !.!! !|||!.!!!!!!! ! ||||||! !||||||:!! ! !|||!!...!! eGlyValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsn 204136 : TGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAAT : 204192 310 : LeuHisTyrArgMetLeuArgLeu : 317 |||!.! |||:!: !!.!:!! LeuArgThrArgLeuAlaAsnIle 204193 : CTTCGTACACGACTTGCAAACATA : 204218 vulgar: gi|805793979|ref|XP_012142615.1| 251 317 . KQ414617.1 204020 204218 + 107 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204021 204218 107 + . gene_id 1 ; sequence gi|805793979|ref|XP_012142615.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204021 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 204021 204218 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204021 204218 107 + . alignment_id 1 ; Query gi|805793979|ref|XP_012142615.1| ; Align 204021 252 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795881|ref|XP_012143130.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 700 Query range: 1 -> 334 Target range: 3155029 -> 3156425 2 : PheLeuCysIleIleValSerAlaIleThrPheLeuGlnLeuMetAspLeuValLe : 20 !:! !! |||:!:|||! ! !! ..!||| !|||:!!|||||||||:!!:! TyrThrLeuIleLeuValTyrIleThrValPheSerGlnIleMetAspLeuIleVa 3155030 : TACACGTTAATACTGGTGTACATCACGGTTTTCAGCCAAATCATGGACCTAATCGT : 3155084 21 : uIleValGluAsnGlnAlaGluPheThrAspAsnIleTyrIleSerLeuSerMetI : 39 !! !||| !!.!|||! !||||||!:!||||||.!!|||||| !|||:!! lAsnValThrThrGlnAspGluPheSerAspAsnPheTyrIleLeuLeuAlaCysA 3155085 : GAACGTGACGACTCAAGACGAGTTTAGCGACAATTTTTACATACTTCTGGCGTGTG : 3155141 40 : leIleAlaCysTyrLysMetTyrSerIleLeuLeuSerGlnLysAsnIleGlyVal : 57 |||:!!! ! ||| ! |||:!:||| !|||!::||||||:!! ! ! laIleSerLeuGlnLysAlaGlnSerValLeuAsnSerArgLysAsnValHisArg 3155142 : CGATATCCTTGCAGAAAGCACAGAGTGTGTTAAACAGTCGTAAGAATGTCCACCGT : 3155195 58 : LeuThrAsnIleLeuGluAspGluProPheGlnProLysAsnGluGluGluIleGl : 76 :!!! !:!!:!!|||.!...!|||||||||!!.|||:!! !:!!||||||||||| MetIleAspLeuLeuAsnSerGluProPheHisProGluCysLysGluGluIleGl 3155196 : ATGATCGATCTTTTGAACAGCGAACCTTTTCATCCAGAATGTAAGGAGGAAATCGA : 3155252 77 : uIleArgArgLysPheAspAsnLysAla{Ly} >>>> Target Intron 1 > : 86 |||||||!!!!:!.!!..!.!. ! |||{!:} 119 bp uIleArgSerArgIleSerGluHisAla{Ar}++ 3155253 : GATAAGAAGTAGGATCTCCGAGCACGCC{AG}gt...................... : 3155286 87 : >>> {s}GlnGlnAlaValLeuTyrThrLeuLeuValGluSerSerValThrLeu : 102 {!}::!...:!!..!! !|||.!!:!!||||||||||||!!!|||! ! ! ++{g}ArgSerSerThrTyrTyrAlaIleLeuValGluSerThrValMetThr 3155287 : ...ag{A}AGAAGCTCAACCTATTACGCGATTCTGGTCGAATCGACGGTGATGACT : 3155449 103 : TyrValCysValAspIleLeuLysPheAspAspLysLysLeuLeuTyrArgIleTr : 121 ! !! !! !! :!:|||||| !!:...::: |||! !||||||||||| LeuSerPheGlyAlaLeuLeuLysProGluSerArgProLeuProTyrArgIleTr 3155450 : TTGTCTTTCGGTGCACTGTTGAAACCAGAATCACGTCCTTTACCGTATCGAATTTG : 3155506 122 : pLeuProSerGluLeuLeuProSerVal<->HisIlePheIleTyrLeuGlnGlnS : 139 |||||||!!!.!.! ! !|||! !:!! :!! !! |||||| !! |||! pLeuProCysAsnTyrThrProLeuIleThrTyrCysSerIleTyrThrLeuGlnC 3155507 : GCTACCTTGCAATTACACCCCGTTAATTACTTACTGTTCGATTTACACTCTCCAAT : 3155563 140 : erLeuSerLeuIleValGlySerIleIleHisValAlaCysAspSerLeuIleTrp : 157 !!:!!:!!||| !:!!.!!:!!!!:!!:||||||||||||||||||||||||!! ysValAlaLeuAlaLeuSerAlaMetMetHisValAlaCysAspSerLeuIleCys 3155564 : GTGTGGCACTCGCTCTAAGCGCTATGATGCACGTCGCCTGCGACAGTTTGATCTGC : 3155617 158 : GlyLeuLeuIleHisSerCysCysGlnLeuGluIleLeuGluAlaArgLeuLysAl : 176 |||||||||:!!|||!!!! ! !!|||:!!|||||||||! ..!|||||||||.. GlyLeuLeuLeuHisThrTyrGlyGlnIleGluIleLeuGlyCysArgLeuLysTh 3155618 : GGCCTGCTGTTACACACTTACGGCCAGATCGAGATCCTCGGTTGTCGTCTGAaaac : 3155674 177 : aIleLysArgAspAspAspGlnSerAlaLysSerSerAlaArgTyrHisAsnArgV : 195 .||||||...::::::...:!!!!!:!!|||! !!!!!.!||||||:!!|||! !: rIleLysGluAsnGluSerLysThrSerLysLeuCysValArgTyrAsnAsnLeuI 3155675 : gataaaagaaaacgagagtAAGACGTCCAAGTTGTGCGTTCGTTACAACAACCTTA : 3155731 196 : alTyr{Ar} >>>> Target Intron 2 >>>> {g}TyrAlaLysMetIle : 202 !!|||{||} 69 bp {|}!:!.!! |||||| leTyr{Ar}++ ++{g}PheThrAlaMetIle 3155732 : TCTAT{CG}gt.........................ag{A}TTCACCGCTATGATA : 3155821 203 : AsnGlnGluPheLysMetIleIlePheValGlnPheThrAlaSerThrLeuValVa : 221 |||:!!:!!|||:!!||| ||||||..!||||||.!!!.!|||||||||!.!:! AsnGluGlnPheGluMetAlaIlePheThrGlnPheAlaValSerThrLeuAlaIl 3155822 : AACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGTGAGTACGCTGGCGAT : 3155878 222 : lCysPheSerLeuTyrIleIleAlaThrAlaLysAspMetAsnAspArgLeuLeuV : 240 !||||||!:!||||||:!!:!!.!! !:!! ! ! ! ! !|||! !:!!! eCysPheAsnLeuTyrLeuLeuThrGlySerAspValThrProIleArgTyrValG 3155879 : ATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGACGCCGATTAGGTATGTGG : 3155935 241 : alIleAlaValTyrGluSerCysMetLeuGlyGlnIlePhePheTyrCysTrpTyr : 258 !||| !:!!|||...|||||||||||| !|||||||||.!!|||||||||||| luIleIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysTrpTyr 3155936 : AAATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTGGTAC : 3155989 259 : GlyAsnGluValLysLeuLys >>>> Target Intron 3 >>>> SerVal : 267 ||||||||||||||||||||| 73 bp |||:!! GlyAsnGluValLysLeuLys++ ++SerLeu 3155990 : GGGAACGAAGTTAAGCTGAAGgt.........................agAGCCTC : 3156089 268 : GlnLeuSerAspValIlePheGlyThrAspTrpMetGlnPheSerArgAspThrLy : 286 :!!:!!|||:!!:!!|||||| ! !||||||! ! !|||..!!:!! !||||| GluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAlaThrLy 3156090 : GAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGCTACAAA : 3156146 287 : sLysIleLeuSerValIleMetArgArgAlaThrMetSerIleGluPheThrSerV : 305 |::!! !:!! !..!!!:|||! !||||||:!! ! !!||||||.!!! !|||| sArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleIleSerV 3156147 : ACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCATCAGCG : 3156203 306 : alTyrIleValThrMetAsnLeuGluSerPheValSer >>>> Target Intr : 318 || !:!::!!:!!:!!||||||!!:|||||||||:!! 133 bp alArgValLeuSerValAsnLeuAspSerPheValAla++ 3156204 : TTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt................ : 3156244 319 : on 4 >>>> LeuLeuLysThrSerTyrSerAlaTyrAsnMetLeuGlnSerSer : 332 ||||||||||||||||||||||||||||||:!:|||||| !!.!! ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGlnArgGly 3156245 : .........agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAACGCGGC : 3156417 333 : HisGly : 334 .!.||| GluGly 3156418 : GAAGGC : 3156425 vulgar: gi|805795881|ref|XP_012143130.1| 1 334 . KQ414646.1 3155029 3156425 + 700 M 84 252 S 0 2 5 0 2 I 0 115 3 0 2 S 1 1 M 44 132 G 0 3 M 66 198 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 68 204 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 129 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155030 3156425 700 + . gene_id 1 ; sequence gi|805795881|ref|XP_012143130.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3155030 3155283 . + . KQ414646.1 exonerate:protein2genome:local exon 3155030 3155283 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3155284 3155285 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3155284 3155402 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3155401 3155402 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3155403 3155738 . + . KQ414646.1 exonerate:protein2genome:local exon 3155403 3155738 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3155739 3155740 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3155739 3155807 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3155806 3155807 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3155808 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155808 3156012 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156013 3156014 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156013 3156085 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3156084 3156085 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156086 3156241 . + . KQ414646.1 exonerate:protein2genome:local exon 3156086 3156241 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156242 3156243 . + . intron_id 4 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156242 3156374 . + . intron_id 4 KQ414646.1 exonerate:protein2genome:local splice3 3156373 3156374 . + . intron_id 3 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156375 3156425 . + . KQ414646.1 exonerate:protein2genome:local exon 3156375 3156425 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155030 3156425 700 + . alignment_id 1 ; Query gi|805795881|ref|XP_012143130.1| ; Align 3155030 2 252 ; Align 3155404 87 132 ; Align 3155539 131 198 ; Align 3155809 198 204 ; Align 3156086 266 156 ; Align 3156375 318 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795881|ref|XP_012143130.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 483 Query range: 91 -> 332 Target range: 3164337 -> 3165539 92 : TyrThrLeuLeuValGluSerSerValThrLeuTyrValCysValAspIleLeuLy : 110 !::!:!||||||:!! !!!:!! !! !:!!|||||| ! ! !:!: ! ! TrpSerLeuLeuLeuIleCysAlaPheTrpIleTyrValArgSerLeuLeuThrAs 3164338 : TGGAGTTTACTATTAATTTGTGCGTTCTGGATATACGTGAGATCGCTTTTGACAGA : 3164392 111 : sPheAspAspLysLysLeuLeuTyrArgIleTrpLeuProSerGluLeuLeuProS : 129 |||..!..!!:!||||||:!!!:!||| !|||||||||! !!!:! !! !|||: pPheSerSerArgLysLeuMetPheArgAlaTrpLeuProTyrAspTyrSerProA 3164393 : TTTTAGTAGTAGAAAACTGATGTTTCGAGCATGGTTACCCTACGATTACTCCCCTG : 3164449 130 : er<->ValHisIlePheIleTyrLeuGlnGlnSerLeuSerLeuIleValGlySer : 146 !! :!! !|||.!!! !!:!:!!!!.|||:!!:!!:!! !! :!! !!!!! laProIlePheIleLeuThrPheValHisGlnAlaIleAlaAlaThrIleCysCys 3164450 : CGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCGACGATATGTTGC : 3164503 147 : IleIleHisValAlaCysAspSerLeuIleTrpGlyLeuLeuIleHisSerCysCy : 165 ! ! !|||.!! ||||||||| ! ||||||||||||:!!! !! !|| ThrSerSerValThrValAspSerLeuTyrThrGlyLeuLeuIleAsnIleTyrCy 3164504 : ACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTGATTAATATCTACTG : 3164560 166 : sGlnLeuGluIleLeuGluAlaArgLeuLysAlaIleLysArgAspAspAspGlnS : 184 ||||!!!|||||||||||| !||||||!:! !:!!|||! !!!:.!.|||.!.| sGlnPheGluIleLeuGluHisArgLeuArgAsnValLysThrGluGlnAspAspS 3164561 : CCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAACTGAGCAGGATGACT : 3164617 185 : erAlaLysSerSerAlaArgTyrHisAsnArgValTyr{Ar} >>>> Target : 197 ||!.!|||..!!!!|||!:!:!!|||:!!|||:!!|||{!:} 32 erValLysGlnCysAlaGlnHisHisAspArgIleTyr{Gl}++ 3164618 : CTGTGAAGCAATGTGCTCAACATCACGATCGTATATAC{CA}gt............ : 3164660 198 : Intron 1 >>>> {g}TyrAlaLysMetIleAsnGlnGluPheLysMetIleIl : 210 5 bp {!}!:!:!!|||! !:!:|||:!!|||||||||:!!|||:! ++{n}PheSerLysLysValAsnGluGluPheLysLeuIleLe 3164661 : .............ag{A}TTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACT : 3165020 211 : ePheValGlnPheThrAlaSerThrLeuValValCysPheSerLeuTyrIleIleA : 229 :.!! !|||||| ! !|||! !! !|||:!!||||||!:!|||||| !!!:. uIleSerGlnPheCysIleSerMetSerValIleCysPheAsnLeuTyrArgMetT 3165021 : GATTTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGA : 3165077 230 : laThrAlaLysAspMetAsnAspArgLeuLeuValIleAlaValTyrGluSerCys : 247 !! ! !||| |||:!: :::...::: ||| !:!!|||...! !||| hrGlnIleLys---MetAspThrLysPheValGluIleIleLeuTyrSerPheCys 3165078 : CACAGATCAAA---ATGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGC : 3165128 248 : MetLeuGlyGlnIlePhePheTyrCysTrpTyrGlyAsnGluValLysLeuLys : 266 ! :!! !|||||||||!:!|||||||||||||||||||||||||||! !||| ThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGluValLysHisLys++ 3165129 : ACTATCACGCAGATATTTTACTATTGCTGGTACGGCAACGAAGTGAAACATAAGgt : 3165185 267 : >>>> Target Intron 2 >>>> SerValGlnLeuSerAspValIlePheGl : 275 80 bp |||:!!|||||| !! !!:!!|||||| ++SerLeuGlnLeuProTyrMetIlePheHi 3165186 : .........................agAGCCTCCAACTTCCATACATGATATTTCA : 3165292 276 : yThrAspTrpMetGlnPheSerArgAspThrLysLysIleLeuSerValIleMetA : 294 !!:!||||||! !...!!.!:!!.!:!!..!! !:! !|||! !:!!!!:|||| sSerAspTrpThrSerLeuAsnAsnAsnValThrArgAlaLeuLeuIleMetMetA 3165293 : CAGCGACTGGACGTCTTTGAACAACAACGTCACCAGAGCACTTTTAATCATGATGA : 3165349 295 : rgArgAlaThrMetSerIleGluPheThrSerValTyrIleValThrMetAsnLeu : 312 ||||||||..!! ! !!|||||||||||||||:!!:!!:!!|||:!!:!!|||||| rgArgAlaValArgProIleGluPheThrSerIleHisValValSerValAsnLeu 3165350 : GACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTC : 3165403 313 : GluSerPheValSer >>>> Target Intron 3 >>>> LeuLeuLysThr : 321 |||||||||:!!:!! 74 bp :!!:!!|||||| GluSerPheMetAla++ ++ValIleLysThr 3165404 : GAATCCTTCATGGCAgt.........................agGTAATAAAAACT : 3165504 322 : SerTyrSerAlaTyrAsnMetLeuGlnSerSer : 332 ||||||||||||!:!||||||:!!|||..!||| SerTyrSerAlaPheAsnMetIleGlnGlnSer 3165505 : TCGTACTCCGCGTTCAACATGATCCAACAAAGC : 3165539 vulgar: gi|805795881|ref|XP_012143130.1| 91 332 . KQ414646.1 3164337 3165539 + 483 M 38 114 G 0 3 M 67 201 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 35 105 G 1 0 M 32 96 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164338 3165539 483 + . gene_id 2 ; sequence gi|805795881|ref|XP_012143130.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3164338 3164657 . + . KQ414646.1 exonerate:protein2genome:local exon 3164338 3164657 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164658 3164659 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164658 3164982 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3164981 3164982 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164983 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164983 3165184 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3165185 3165186 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165185 3165264 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3165263 3165264 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165265 3165420 . + . KQ414646.1 exonerate:protein2genome:local exon 3165265 3165420 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165421 3165422 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165421 3165494 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3165493 3165494 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165495 3165539 . + . KQ414646.1 exonerate:protein2genome:local exon 3165495 3165539 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164338 3165539 483 + . alignment_id 2 ; Query gi|805795881|ref|XP_012143130.1| ; Align 3164338 92 114 ; Align 3164455 130 201 ; Align 3164984 198 105 ; Align 3165089 234 96 ; Align 3165265 266 156 ; Align 3165495 318 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795881|ref|XP_012143130.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 370 Query range: 95 -> 332 Target range: 3160086 -> 3161363 96 : ValGluSerSerValThrLeuTyrValCysValAspIleLeuLysPheAspAspLy : 114 ||| !|||:!!..! !:!!!:::!!! !! !!!: ! !||| !!: ValLeuSerAlaThrGlyValTrpMetLeuSerAlaMetThrAlaPheArgIleAr 3160087 : GTACTGAGCGCGACTGGTGTATGGATGTTGTCGGCCATGACGGCATTCAGGATCAG : 3160141 115 : sLysLeuLeuTyrArgIleTrpLeuProSerGluLeuLeuProSerValHisIleP : 133 !:!!|||! ! !|||:!!|||||||||! !!!:! ! ! !!!!!:!! !|||| gGluLeuProLeuArgValTrpLeuProPheAspTyrArgAlaThrLeuGlyIleP 3160142 : AGAGTTACCCCTTCGAGTATGGTTACCTTTCGATTATAGAGCCACATTGGGTATTT : 3160198 134 : he<-><->IleTyrLeuGlnGlnSerLeuSerLeuIleValGlySerIleIleHis : 149 || ! !||| ! ! |||! !:!!!!!|||||| !! !!!!! ! ! heSerLeuThrTyrAlaTyrGlnPheValThrLeuIlePheIleThrThrAlaIle 3160199 : TCAGCCTTACCTACGCTTATCAGTTTGTAACTCTGATATTCATTACTACCGCGATT : 3160252 150 : ValAlaCysAspSerLeuIleTrpGlyLeuLeuIleHisSerCysCysGlnLeuGl : 168 :!!!.! !|||!:!|||.!! ! |||||||||||||||! !! !||||||!!!|| MetGlyThrAspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGl 3160253 : ATGGGTACTGACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGA : 3160309 169 : uIleLeuGluAlaArgLeuLysAlaIleLysArgAspAspAspGlnSerAlaLysS : 187 |||||||:!! !|||||||||::!||||||! !||| !!: ! |||||||||. uIleLeuGlnHisArgLeuLysSerIleLysProAspArgGluTyrSerAlaLysG 3160310 : GATACTCCAACATCGTCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAAC : 3160366 188 : erSerAlaArgTyrHisAsnArgValTyr{Ar} >>>> Target Intron 1 : 197 .!!!!||| !:!!||| !!|||:!!|||{!:} 328 bp lnCysAlaPheHisHisTyrArgIleTyr{Ly}++ 3160367 : AGTGTGCTTTTCATCATTATCGCATATAC{AA}gt..................... : 3160400 198 : >>>> {g}TyrAlaLysMetIleAsnGlnGluPheLysMetIleIlePheValGl : 213 {!}!:!|||:!!!!:|||||| !:!!|||!..!!:! !!: !..!|| ++{s}PheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGl 3160401 : ....ag{A}TTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCA : 3160772 214 : nPheThrAlaSerThrLeuValValCysPheSerLeuTyrIleIleAlaThrAlaL : 232 |||| !!.!!!!|||:!!..!:!!||||||!:!|||!:! !:!:.!! !.!!| nPheLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrL 3160773 : ATTTCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCA : 3160829 233 : ysAspMetAsnAspArgLeuLeuValIleAlaValTyrGluSerCysMetLeuGly : 250 || :!! !!...!:!:!!|||!.!:!: ! !!:! ! ! !!:!!!!!!.! ys---ValTyrSerGlnValLeuAlaLeuIleProPheMetValSerValPheAla 3160830 : AG---GTGTATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCA : 3160880 251 : GlnIlePhePheTyrCysTrpTyrGlyAsnGluValLysLeuLys >>>> Targ : 266 |||||||||!:!! !||||||||||||||||||..!|||:!!||| GlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys++ 3160881 : CAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGgt......... : 3160930 267 : et Intron 2 >>>> SerValGlnLeuSerAspValIlePheGlyThrAspTr : 278 74 bp |||:!!:!!:!!!!!|||..!:!!|||! !!:!:!!|| ++SerLeuGluIleCysAspThrValPheGluSerAsnTr 3160931 : ................agAGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTG : 3161038 279 : pMetGlnPheSerArgAspThrLysLysIleLeuSerValIleMetArgArgAlaT : 297 |! ! !.!.|||!:!..!|||||||||! !||| !..!|||||| !|||:!! pThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgSerL 3161039 : GACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCGT : 3161095 298 : hrMetSerIleGluPheThrSerValTyrIleValThrMetAsnLeuGluSerPhe : 315 !! ! !!||||||||||||.!!!.!!:!:!! !! !!:!:||||||||||||||| euLysProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSerPhe 3161096 : TGAAGCCAATAGAATTCACCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTT : 3161149 316 : ValSer >>>> Target Intron 3 >>>> LeuLeuLysThrSerTyrSer : 324 !||| 161 bp |||:!!||||||||||||||| LysSer++ ++LeuValLysThrSerTyrSer 3161150 : AAAAGTgt.........................agTTGGTGAAAACTTCCTATTCG : 3161337 325 : AlaTyrAsnMetLeuGlnSerSer : 332 !.!!:!|||:!::!!|||..!!!! ValPheAsnValIleGlnGlnThr 3161338 : GTATTCAACGTAATCCAGCAAACG : 3161363 vulgar: gi|805795881|ref|XP_012143130.1| 95 332 . KQ414646.1 3160086 3161363 + 370 M 38 114 G 0 6 M 63 189 S 0 2 5 0 2 I 0 324 3 0 2 S 1 1 M 35 105 G 1 0 M 32 96 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160087 3161363 370 + . gene_id 3 ; sequence gi|805795881|ref|XP_012143130.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3160087 3160397 . + . KQ414646.1 exonerate:protein2genome:local exon 3160087 3160397 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3160398 3160399 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3160398 3160725 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3160724 3160725 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3160726 3160927 . + . KQ414646.1 exonerate:protein2genome:local exon 3160726 3160927 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3160928 3160929 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3160928 3161001 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3161000 3161001 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3161002 3161157 . + . KQ414646.1 exonerate:protein2genome:local exon 3161002 3161157 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3161158 3161159 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3161158 3161318 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3161317 3161318 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3161319 3161363 . + . KQ414646.1 exonerate:protein2genome:local exon 3161319 3161363 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160087 3161363 370 + . alignment_id 3 ; Query gi|805795881|ref|XP_012143130.1| ; Align 3160087 96 114 ; Align 3160207 134 189 ; Align 3160727 198 105 ; Align 3160832 234 96 ; Align 3161002 266 156 ; Align 3161319 318 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795881|ref|XP_012143130.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 337 Query range: 85 -> 265 Target range: 3150032 -> 3150808 86 : LysGlnGlnAlaValLeuTyrThrLeuLeuValGluSerSerValThrLeuTyrVa : 104 !:!..! !.!!:!!! !||||||:!!||||||||| !!!!||| !! ! :! ArgSerValThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCysMetIl 3150033 : AGGTCGGTGACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTGTATGAT : 3150087 105 : lCysValAspIleLeu<->LysPheAspAspLysLysLeuLeuTyrArgIleTrpL : 122 ! ! !...:!:||| ! |||:!!!!:::!:!!||| !|||||| !|||| eLeuSerSerLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgAlaTrpL 3150088 : CCTCTCTTCGTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAGCCTGGC : 3150144 123 : euProSerGluLeu<->LeuProSerValHisIlePheIleTyrLeuGlnGlnSer : 139 |||||! !!!:! ! ||||||!!! !:!! !.!! |||:!!!!.|||! ! euProPheAspTyrSerLeuProThrTyrTyrTyrIleAlaTyrValHisGlnIle 3150145 : TGCCCTTCGATTACTCTCTGCCAACTTACTATTACATCGCGTACGTTCATCAGATC : 3150198 140 : LeuSerLeuIleValGlySerIleIleHisValAlaCysAspSerLeuIleTrpGl : 158 :!!:!!||||||! ! !|||:!! :!!|||||||||||| !:!!|||!! || ValAlaLeuIleGlyThrSerLeuSerAsnValAlaCysAspValIleIleCysGl 3150199 : GTCGCGCTGATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCATCTGCGG : 3150255 159 : yLeuLeuIleHisSerCysCysGlnLeuGluIleLeuGluAlaArgLeuLysAlaI : 177 |||||||:!!|||:!!||| !!|||! !|||||||||:!! !|||:!!|||! !! yLeuLeuValHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMetLysGluM 3150256 : GTTGCTCGTTCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATGAAGGAGA : 3150312 178 : leLysArgAspAspAspGlnSerAlaLysSerSerAlaArgTyrHisAsnArgVal : 195 !:! !!:!!!:.!. ! !!:! ! !!.!! !!.!|||!:!|||:!! !:!! etThrGlnGluGlnArgProAsnIleGlyLysIleValArgPheHisAspTyrLeu 3150313 : TGACGCAGGAACAGAGGCCGAATATCGGGAAAATCGTTCGTTTCCACGATTATCTT : 3150366 196 : Tyr{Ar} >>>> Target Intron 1 >>>> {g}TyrAlaLysMetIleAs : 203 |||{ !} 230 bp {!}|||!.! ! !!!:.! Tyr{Gl}++ ++{y}TyrValPheThrMetGl 3150367 : TAC{GG}gt.........................ag{G}TACGTTTTCACGATGCA : 3150620 204 : nGlnGluPheLysMetIleIlePheValGlnPheThrAlaSerThrLeuValValC : 222 .:!!:!!|||!:! !|||||| !||||||.!! !:!!|||||||||||||||| nGluLysPheArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuValValC 3150621 : AGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGGTAGTGT : 3150677 223 : ysPheSerLeuTyrIleIleAlaThrAlaLysAspMetAsnAspArgLeuLeuVal : 240 |||||! !|||||| !:!:|||!.!.!! !!:!:!..!!:!! !||| ! ysPheIleLeuTyrGluLeuAlaAsnThrProProIleSerSerLysTyrLeuGln 3150678 : GTTTCATCCTGTACGAATTGGCGAACACGCCTCCAATCAGCTCCAAGTACCTGCAA : 3150731 241 : IleAlaValTyrGluSerCysMetLeuGlyGlnIlePhePheTyrCysTrpTyrGl : 259 .!!!.!:!!||| !:!!||||||:!! !|||||||||||||||||||||||||| PheValLeuTyrLeuAlaCysMetMetThrGlnIlePhePheTyrCysTrpTyrGl 3150732 : TTTGTCCTGTACCTGGCCTGTATGATGACGCAGATCTTCTTTTACTGCTGGTACGG : 3150788 260 : yAsnGluValLysLeuLys : 265 |.!.:!!:!!||||||||| yGluGlnLeuLysLeuLys 3150789 : CGAGCAGTTGAAACTGAAG : 3150808 vulgar: gi|805795881|ref|XP_012143130.1| 85 265 . KQ414646.1 3150032 3150808 + 337 M 24 72 G 0 3 M 17 51 G 0 3 M 70 210 S 0 2 5 0 2 I 0 226 3 0 2 S 1 1 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150033 3150808 337 + . gene_id 4 ; sequence gi|805795881|ref|XP_012143130.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3150033 3150373 . + . KQ414646.1 exonerate:protein2genome:local exon 3150033 3150373 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150374 3150375 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150374 3150603 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150602 3150603 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150604 3150808 . + . KQ414646.1 exonerate:protein2genome:local exon 3150604 3150808 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150033 3150808 337 + . alignment_id 4 ; Query gi|805795881|ref|XP_012143130.1| ; Align 3150033 86 72 ; Align 3150108 110 51 ; Align 3150162 127 210 ; Align 3150605 198 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795881|ref|XP_012143130.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 294 Query range: 134 -> 318 Target range: 3174420 -> 3175371 135 : TyrLeuGlnGlnSerLeuSerLeuIleValGlySerIleIleHisValAlaCysAs : 153 ||| ! ! |||! !:!!!!!|||||| !! !!!! ! ! !:!!!.!! !|| TyrAlaTyrGlnPheValThrLeuIlePheLeuThrSerAlaIleIleGlySerAs 3174421 : TACGCTTATCAGTTTGTAACTCTGATATTCCTTACTTCTGCTATTATCGGTTCTGA : 3174475 154 : pSerLeuIleTrpGlyLeuLeuIleHisSerCysCysGlnLeuGluIleLeuGluA : 172 |!:!|||.!! ! |||||||||||||||! !! !||||||!!!|||||||||:!! pAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnH 3174476 : CAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAAC : 3174532 173 : laArgLeuLysAlaIleLysArgAspAspAspGlnSerAlaLysSerSerAlaArg : 190 !|||||||||::!||||||! !||| !!: ! |||||||||..!!!!||| ! isArgLeuLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPhe 3174533 : ATCGTCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTT : 3174586 191 : TyrHisAsnArgValTyr{Ar} >>>> Target Intron 1 >>>> {g}Ty : 198 :!!||| !!|||:!!|||{!:} 328 bp {!}!: HisHisTyrArgIleTyr{Ly}++ ++{s}Ph 3174587 : CATCATTATCGCATATAC{AA}gt.........................ag{A}TT : 3174938 199 : rAlaLysMetIleAsnGlnGluPheLysMetIleIlePheValGlnPheThrAlaS : 217 !|||:!!!!:|||||| !:!!|||!..!!:! !!: !..!|||||| !!.!! eAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValT 3174939 : CGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGA : 3174995 218 : erThrLeuValValCysPheSerLeuTyrIleIleAlaThrAlaLysAspMetAsn : 235 !!|||:!!..!:!!||||||!:!|||!:! !:!:.!! !.!!||| :!! !! hrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLys---ValTyr 3174996 : CCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAG---GTGTAT : 3175046 236 : AspArgLeuLeuValIleAlaValTyrGluSerCysMetLeuGlyGlnIlePhePh : 254 ...!:!:!!|||!.!:!: ! !!:! ! ! !!:!!!!!!.!|||||||||!: SerGlnValLeuAlaLeuIleProPheMetValSerValPheAlaGlnIlePheTy 3175047 : TCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTA : 3175103 255 : eTyrCysTrpTyrGlyAsnGluValLysLeuLys{Se} >>>> Target Intr : 266 !! !||||||||||||||||||..!|||:!!|||{ } 74 bp rCysCysTrpTyrGlyAsnGluThrLysValLys{Va}-- 3175104 : TTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG{GT}ac................ : 3175143 267 : on 2 >>>> {r}ValGlnLeuSerAspValIlePheGlyThrAspTrpMetGln : 280 {!}:!!:!!:!!!!!|||..!:!!|||! !!:!:!!|||! ! ! ++{l}LeuGluIleCysAspThrValPheGluSerAsnTrpThrAla 3175144 : .........ag{C}CTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCA : 3175255 281 : PheSerArgAspThrLysLysIleLeuSerValIleMetArgArgAlaThrMetSe : 299 .!.|||!:!..!|||||||||! !||| !..!|||||| !|||:!! !! ! ! LeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysPr 3175256 : CTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCC : 3175312 300 : rIleGluPheThrSerValTyrIleValThrMetAsnLeuGluSerPheValSerL : 318 !||||||||||||.!!!.!!:!:!! !! !!:!:||||||||||||||| !|||: oIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSerPheLysSerV 3175313 : AATAGAATTCACCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAAAGTG : 3175369 319 : eu : 318 !! al 3175370 : TT : 3175371 vulgar: gi|805795881|ref|XP_012143130.1| 134 318 . KQ414646.1 3174420 3175371 + 294 M 62 186 S 0 2 5 0 2 I 0 324 3 0 2 S 1 1 M 35 105 G 1 0 M 32 96 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174421 3175371 294 + . gene_id 5 ; sequence gi|805795881|ref|XP_012143130.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3174421 3174608 . + . KQ414646.1 exonerate:protein2genome:local exon 3174421 3174608 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3174609 3174610 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3174609 3174936 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3174935 3174936 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3174937 3175140 . + . KQ414646.1 exonerate:protein2genome:local exon 3174937 3175140 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3175141 3175142 . + . intron_id 2 ; splice_site "AC" KQ414646.1 exonerate:protein2genome:local intron 3175141 3175214 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3175213 3175214 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3175215 3175371 . + . KQ414646.1 exonerate:protein2genome:local exon 3175215 3175371 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3174421 3175371 294 + . alignment_id 5 ; Query gi|805795881|ref|XP_012143130.1| ; Align 3174421 135 186 ; Align 3174938 198 105 ; Align 3175043 234 96 ; Align 3175216 267 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795881|ref|XP_012143130.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 254 Query range: 99 -> 330 Target range: 3153156 -> 3154089 100 : ValThrLeuTyrValCysValAspIleLeuLysPheAspAspLysLysLeuLeuTy : 118 |||..!|||!:::!! ! !!.!! ! ! !:! :::|||... :: ValValLeuTrpIleThrSerTyrPheThrAspTyrArgArgArgLysPheLysPh 3153157 : GTCGTTTTATGGATAACATCGTACTTCACGGACTACAGGcgcagaaaattcaaatt : 3153211 119 : rArgIleTrpLeuProSerGluLeuLeuProSer<->ValHisIlePheIleTyrL : 136 :|||::!|||||||||! !!!: ! ! !!..! ||| !! !.!.||||||! eArgValTrpLeuProTyrAspThrThrThrGlnProValPheThrLeuIleTyrC 3153212 : tcgcgtCTGGTTACCTTACGACACTACTACACAACCTGTCTTCACTCTGATCTACT : 3153268 137 : euGlnGlnSerLeuSerLeuIleValGlySerIleIleHisValAlaCysAspSer : 154 !||||||! !:!!!!! ! !.!! !! !|||:!!||| !||||||!!! ysGlnGlnIleValCysThrTrpTyrSerValAsnIleAsnValIleCysAspCys 3153269 : GTCAACAGATCGTCTGCACGTGGTACAGCGTGAATATTAACGTCATTTGCGACTGC : 3153322 155 : LeuIleTrpGlyLeuLeuIleHisSerCysCysGlnLeuGluIleLeuGlu<->Al : 172 |||.!! ! ||||||:!!|||!!.! !|||! |||..!! :!!:!! .! LeuPheSerGlyLeuMetIleGlnIleCysSerIleLeuArgLysMetLysProTh 3153323 : CTGTTCAGCGGCCTGATGATACAGATTTGCTCAATCTTACGGAAGATGAAACCTAC : 3153379 173 : aArgLeuLysAlaIleLysArgAspAspAspGlnSerAlaLysSerSerAlaArgT : 191 !|||! !!!...!:!: ! ! !::!! !.!!!....!||| ::: rArgArgAsnCysValLeuValThrIleIleArgTyrThrSerGlnSerArgGlnG 3153380 : TCGGCGAAACTGTGTGCTCGTCACCATAATCAGATATACAAGCCAGTCTCGacaag : 3153436 192 : yrHisAsnArgValTyrArgTyrAlaLysMetIleAsnGlnGluPheLysMetIle : 209 ...||| ! !!! |||:!!!!::!:|||:!!:!!.!! !! :!! luIleLysArgTyrVal***LeuAlaGlnIleValAsnGluLysLeuGlyAsnVal 3153437 : aaattaaacgatacgTTTGATTGGCGCAAATAGTGAACGAGAAGCTTGGAAATGTC : 3153490 210 : IlePheValGlnPheThrAlaSerThrLeuValValCysPheSerLeuTyrIleIl : 228 !:!!||||||.!! !|||||| !!.!:!!||||||!:!|||||| !!! SerSerIleGlnPheAlaIleSerThrGlyAlaIleCysPheAsnLeuTyrArgMe 3153491 : TCGAGTATACAGTTCGCGATAAGCACAGGAGCGATATGCTTCAATCTCTATCGAAT : 3153547 229 : eAlaThrAlaLysAspMetAsnAspArgLeuLeuValIleAlaValTyrGluSerC : 247 ::!!..! ! !!::!:..! !:!!!!:!!! ! !..! ! ! !| tSerValIle---GluLeuGlyProLysPheValGluAlaLeuThrIleThrValC 3153548 : GTCGGTGATA---GAACTCGGTCCAAAGTTTGTGGAAGCGTTAACTATCACAGTAT : 3153601 248 : ysMetLeuGlyGlnIlePhePheTyrCysTrpTyrGlyAsnGluValLysLeu{L} : 265 ||:!:|||!.!|||||||||!:!||||||||||||||||||::: ... {:} ysLeuLeuAlaGlnIlePheTyrTyrCysTrpTyrGlyAsnAspArgAsnTyr{G} 3153602 : GCTTACTCGCGCAGATATTTTACTATTGTTGGTAcggtaacgatagaaattac{g} : 3153655 266 : >>>> Target Intron 1 >>>> {ys}SerValGlnLeuSerAspValIl : 273 53 bp {!!}|||:!!:!!:!! !||| !:! -+ --{lu}SerLeuGluIleValAspArgVa 3153656 : at.........................gc{AG}AGTCTCGAAATTGTGGACAGAGT : 3153732 274 : ePheGlyThrAspTrpMetGlnPheSerArgAspThrLysLysIleLeuSerValI : 292 ! ..!!:!:!! ! !! ..!..!..!:!!|||||||||||| !:!!! lThrAsnSerAsnIleThrValSerAspGluSerSerLysLysIleLeuValLeuM 3153733 : AACGAACAGTAATATAACCGTGTCGGACGAAAGCTCCAAGAAGATTCTGGTATTGA : 3153789 293 : leMetArgArgAlaThrMetSerIleGluPheThrSerValTyrIleValThrMet : 310 !:!!:||||||||| ! ! !!:!!|||||||||.!!:!! !|||:!!:!!:!: etIleArgArgAlaLeuGluProValGluPheThrGlyLeuArgIleMetSerVal 3153790 : TGATACGACGAGCTTTGGAGCCTGTCGAGTTCACCGGCCTTCGTATCATGTCTGTT : 3153843 311 : AsnLeuGluSerPheValSer >>>> Target Intron 2 >>>> LeuLeu : 319 |||||||||||||||..!||| 184 bp |||||| AsnLeuGluSerPheThrSer++ ++LeuLeu 3153844 : AATCTCGAGTCATTCACGTCGgt.........................agCTGTTG : 3154054 320 : LysThrSerTyrSerAlaTyrAsnMetLeuGln : 330 |||:!!||||||:!!|||!:!|||||||||||| LysSerSerTyrAlaAlaPheAsnMetLeuGln 3154055 : AAATCCTCCTACGCGGCTTTCAATATGCTCCag : 3154089 vulgar: gi|805795881|ref|XP_012143130.1| 99 330 . KQ414646.1 3153156 3154089 + 254 M 30 90 G 0 3 M 42 126 G 0 3 M 60 180 G 1 0 M 32 96 S 0 1 5 0 2 I 0 49 3 0 2 S 1 2 M 52 156 5 0 2 I 0 180 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153157 3154089 254 + . gene_id 6 ; sequence gi|805795881|ref|XP_012143130.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3153157 3153655 . + . KQ414646.1 exonerate:protein2genome:local exon 3153157 3153655 . + . insertions 6 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3153656 3153657 . + . intron_id 1 ; splice_site "AT" KQ414646.1 exonerate:protein2genome:local intron 3153656 3153708 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3153707 3153708 . + . intron_id 0 ; splice_site "GC" KQ414646.1 exonerate:protein2genome:local cds 3153709 3153866 . + . KQ414646.1 exonerate:protein2genome:local exon 3153709 3153866 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3153867 3153868 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3153867 3154050 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3154049 3154050 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3154051 3154089 . + . KQ414646.1 exonerate:protein2genome:local exon 3154051 3154089 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153157 3154089 254 + . alignment_id 6 ; Query gi|805795881|ref|XP_012143130.1| ; Align 3153157 100 90 ; Align 3153250 130 126 ; Align 3153379 172 180 ; Align 3153559 233 96 ; Align 3153711 266 156 ; Align 3154051 318 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795881|ref|XP_012143130.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 253 Query range: 196 -> 318 Target range: 3158452 -> 3158895 197 : ArgTyrAlaLysMetIleAsnGlnGluPheLysMetIleIlePheValGlnPheTh : 215 |||!:!:!!|||! !:!:|||:!!|||||||||:!!|||:!:.!! !|||||| ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3158453 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3158507 216 : rAlaSerThrLeuValValCysPheSerLeuTyrIleIleAlaThrAlaLysAspM : 234 ! !|||! !! !|||:!!||||||!:!|||||| !!!:.!! ! !||| | sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---M 3158508 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---A : 3158561 235 : etAsnAspArgLeuLeuValIleAlaValTyrGluSerCysMetLeuGlyGlnIle : 252 ||:!: :::...::: ||| !:!!|||...! !|||! :!! !|||||| etAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 3158562 : TGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 3158615 253 : PhePheTyrCysTrpTyrGlyAsnGluValLysLeu{L} >>>> Target Int : 265 |||!:!||||||||||||||||||||||||||| {:} 83 bp PheTyrTyrCysTrpTyrGlyAsnGluValLys---{G}-+ 3158616 : TTTTACTATTGTTGGTACGGCAACGAAGTGAAA---{G}at............... : 3158654 266 : ron 1 >>>> {ys}SerValGlnLeuSerAspValIlePheGlyThrAspTrpM : 279 {!!}|||:!!|||||| !! !!:!!|||||| !!:!||||||! --{lu}SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpT 3158655 : ..........gt{AG}AGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGA : 3158776 280 : etGlnPheSerArgAspThrLysLysIleLeuSerValIleMetArgArgAlaThr : 297 !...!!.!:!!.!:!!..!! !:! !|||! !:!!!!:||||||||||||..! hrSerLeuAsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaVal 3158777 : CGTCTTTGAACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTG : 3158830 298 : MetSerIleGluPheThrSerValTyrIleValThrMetAsnLeuGluSerPheVa : 316 ! ! !!|||||||||||||||:!!:!!:!!|||:!!:!!|||||||||||||||:! ArgProIleGluPheThrSerIleHisValValSerValAsnLeuGluSerPheMe 3158831 : AGGCCAATAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCAT : 3158887 317 : lSerLeu : 318 !:!!:!! tAlaVal 3158888 : GGCAGTC : 3158895 vulgar: gi|805795881|ref|XP_012143130.1| 196 318 . KQ414646.1 3158452 3158895 + 253 M 36 108 G 1 0 M 30 90 G 1 0 S 0 1 5 0 2 I 0 79 3 0 2 S 1 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158453 3158895 253 + . gene_id 7 ; sequence gi|805795881|ref|XP_012143130.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3158453 3158651 . + . KQ414646.1 exonerate:protein2genome:local exon 3158453 3158651 . + . insertions 0 ; deletions 2 KQ414646.1 exonerate:protein2genome:local splice5 3158652 3158653 . + . intron_id 1 ; splice_site "AT" KQ414646.1 exonerate:protein2genome:local intron 3158652 3158734 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3158733 3158734 . + . intron_id 0 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local cds 3158735 3158895 . + . KQ414646.1 exonerate:protein2genome:local exon 3158735 3158895 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3158453 3158895 253 + . alignment_id 7 ; Query gi|805795881|ref|XP_012143130.1| ; Align 3158453 197 108 ; Align 3158561 234 90 ; Align 3158737 266 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795881|ref|XP_012143130.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 176 Query range: 91 -> 197 Target range: 3157809 -> 3158130 92 : TyrThrLeuLeuValGluSerSerValThrLeuTyrValCysValAspIleLeuLy : 110 !::!::||||||::: |||::! !! !:!!|||||| ! ! !:!::!! ! TrpSerLeuLeuLeuIleSerThrPhePheIleTyrValArgSerLeuLeuIleAs 3157810 : TGGAGtttactattaatttctacGTTCTTTATATACGTGAGATCGCTTTTGATAGA : 3157864 111 : sPheAspAspLysLysLeuLeuTyrArgIleTrpLeuProSerGluLeuLeuProS : 129 |||..!:!!!:!||||||:!!!:!||| !|||:!!|||! !!!:! !! !|||: pPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrAspTyrSerProA 3157865 : TTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACGATTACTCCCCTG : 3157921 130 : er<->ValHisIlePheIleTyrLeuGlnGlnSerLeuSerLeuIleValGlySer : 146 !! :!! !|||.!!! !! !:!!!!.|||:!!:!!:!!! !! :!! !!!!! laProIlePheIleLeuThrSerValHisGlnAlaIleAlaSerThrIleCysCys 3157922 : CGCCCATTTTTATCCTTACCTCCGTCCATCAAGCTATAGCCTCGACGATATGTTGC : 3157975 147 : IleIleHisValAlaCysAspSerLeuIleTrpGlyLeuLeuIleHisSerCysCy : 165 ! ! !|||.!! |||!!!||| ! ||||||||||||:!!! !! !|| ThrSerThrValThrValAspThrLeuTyrThrGlyLeuLeuIleAsnIleTyrCy 3157976 : ACTTCGACCGTCACTGTGGATACTCTATACACTGGCTTGTTGATTAATATCTACTG : 3158032 166 : sGlnLeuGluIleLeuGluAlaArgLeuLysAlaIleLysArgAspAspAspGlnS : 184 ||||!!!|||||||||||| !||||||!:! !:!!|||! !!!:.!.|||.!.| sGlnPheGluIleLeuGluHisArgLeuArgAsnValLysThrGluGlnAspAspS 3158033 : CCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAACTGAGCAGGATGACT : 3158089 185 : erAlaLysSerSerAlaArgTyrHisAsnArgValTyrArg : 197 ||!.!|||..!!!!|||!:!:!!|||:!!|||:!!|||!:! erValLysGlnCysAlaGlnHisHisAspArgIleTyrGln 3158090 : CTGTGAAGCAATGTGCTCAACATCACGATCGTATATACCAG : 3158130 vulgar: gi|805795881|ref|XP_012143130.1| 91 197 . KQ414646.1 3157809 3158130 + 176 M 38 114 G 0 3 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157810 3158130 176 + . gene_id 8 ; sequence gi|805795881|ref|XP_012143130.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3157810 3158130 . + . KQ414646.1 exonerate:protein2genome:local exon 3157810 3158130 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157810 3158130 176 + . alignment_id 8 ; Query gi|805795881|ref|XP_012143130.1| ; Align 3157810 92 114 ; Align 3157927 130 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795881|ref|XP_012143130.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 192 -> 265 Target range: 3178372 -> 3178591 193 : AsnArgValTyrArgTyrAlaLysMetIleAsnGlnGluPheLysMetIleIlePh : 211 ||| ::: |||!:!.!!:!!! !:!:||| ! !|||:!! !!:||||| AsnPheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePh 3178373 : aatttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTT : 3178427 212 : eValGlnPheThrAlaSerThrLeuValValCysPheSerLeuTyrIleIleAlaT : 230 |:!!||||||:!! !|||:!! !|||:!!|||!!.|||:!!|||! !!!::!!| eLeuGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerT 3178428 : CCTGCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGA : 3178484 231 : hrAlaLysAspMetAsnAspArgLeuLeuValIleAlaValTyrGluSerCysMet : 248 || !!!. .!.!:! !.!!!!:!! ! !||| !||| !!!!|||||| hrIleAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMet 3178485 : CGATTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATG : 3178538 249 : LeuGlyGlnIlePhePheTyrCysTrpTyrGlyAsnGluValLysLeuLys : 265 ||| !|||:!:!:!!!.|||||||||!:!||||||||||||! !|||||| LeuThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys 3178539 : CTCACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: gi|805795881|ref|XP_012143130.1| 192 265 . KQ414646.1 3178372 3178591 + 166 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178373 3178591 166 + . gene_id 9 ; sequence gi|805795881|ref|XP_012143130.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178373 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178373 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178373 3178591 166 + . alignment_id 9 ; Query gi|805795881|ref|XP_012143130.1| ; Align 3178373 193 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795881|ref|XP_012143130.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 198 -> 265 Target range: 3180466 -> 3180667 199 : AlaLysMetIleAsnGlnGluPheLysMetIleIlePheValGlnPheThrAlaSe : 217 |||:!!!!:!!:|||.!.....!.:!!:!!! !!:|||!.!|||||| !!.!|| AlaGluIleMetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePheGlySe 3180467 : GCTGAAATAATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTTCGGAAG : 3180521 218 : rThrLeuValValCysPheSerLeuTyrIleIleAlaThrAlaLysAspMetAsnA : 236 | !:!!|||:!!|||.!.|||||| ! :!: !!.!||| ! !:!:!:! rPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleLeuSerT 3180522 : CTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTCTCAGCA : 3180578 237 : spArgLeuLeuValIleAlaValTyrGluSerCysMetLeuGlyGlnIlePhePhe : 254 !..!!!!|||!.!! ||| ||| :::||| !|||! !|||.!! hrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPheLeu 3180579 : CCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGCTTTCTT : 3180632 255 : TyrCysTrpTyrGlyAsnGluValLysLeuLys : 265 ||||||||||||||||||||||||!:! !||| TyrCysTrpTyrGlyAsnGluValArgThrLys 3180633 : TACTGTTGGTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: gi|805795881|ref|XP_012143130.1| 198 265 . KQ414646.1 3180466 3180667 + 137 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180467 3180667 137 + . gene_id 10 ; sequence gi|805795881|ref|XP_012143130.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180467 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180467 3180667 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180467 3180667 137 + . alignment_id 10 ; Query gi|805795881|ref|XP_012143130.1| ; Align 3180467 199 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795879|ref|XP_012143129.1| PREDICTED: odorant receptor 45a [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 638 Query range: 0 -> 335 Target range: 3152421 -> 3153869 1 : MetGlnThrLeuLysTrpSerTyrLysIleLeuAspIleLeuGlyPheSerLeuTh : 19 |||.!.||||||!..|||!!!!:!|||:!!||| :!: !|||.!! ! ! ! MetAspThrLeuSerTrpThrPheLysLeuLeuThrValAsnGlyIleLeuAlaPr 3152422 : aTGGATACTCTAAGCTGGACGTTCAAGCTTCTGACGGTGAACGGTATTCTGGCACC : 3152476 20 : rSerHisTrpThrSerLeuTrpArgArgAlaLeuTyrAsnSerTyrGlyMetIleL : 38 !||| !!::! !|||! !|||!:!! ! !||||||...! !||| !.!..!!: oSerAlaPheMetSerGlnTrpGlnThrIleLeuTyrGlyMetTyrMetPhePheM 3152477 : GTCCGCTTTCATGTCTCAGTGGCAGACGATTTTGTACGGGATGTACATGTTCTTCA : 3152533 39 : euValIleSerLeuHisPheMetSerAlaThrGlnMetLeuAsp<->LeuPheAsn : 55 !!||| ! !|||:!! |||..!..! !! !!!:|||! ! :!!|||||| etValSerMetLeuTyrAlaMetGluCysCysLeuIleLeuGlyMetIlePheAsn 3152534 : TGGTGTCGATGCTCTACGCGATGGAGTGCTGCCTGATCTTGGGCATGATATTCAAC : 3152587 56 : ValThrAsnGlnGluAspPheValAspAsnLeuTyrValThrLeuValPheLeuCy : 74 ||| !!:!|||||||||||| !!!:|||||||||:!!||||||:!!.!.:!!|| ValAspSerGlnGluAspPheSerGluAsnLeuTyrIleThrLeuIleLeuMetCy 3152588 : GTGGACAGTCAGGAGGATTTCAGCGAGAATCTGTATATCACGTTGATACTGATGTG : 3152644 75 : sAspCysCysLysThrIleMetLeuLeuArgArgArgGlyAsnIleAlaLysLeuI : 93 |..!|||||||||! ! !||||||:!!! ! ! ! !...||| ! :!!: sSerCysCysLysIleTyrMetLeuValThrSerAlaLysGlyIleLysValMetV 3152645 : CAGCTGTTGCAAAATCTACATGCTGGTCACTTCTGCGAAGGGGATCAAAGTTATGG : 3152701 94 : leAspGluLeuLysGluGluProPheAlaThrLeuAsnAlaGluGluThrGluIle : 111 !:|||! |||::!||||||||||||!.! !!:!!||| !||||||!.!|||||| alAspValLeuArgGluGluProPheValProMetAsnArgGluGluAsnGluIle 3152702 : TGGACGTCCTTCGAGAGGAGCCTTTCGTGCCTATGAACAGAGAAGAGAACGAGATT : 3152755 112 : GlnArgLysPheMetGlnGlnIleGlu{A} >>>> Target Intron 1 >>> : 121 ::! !!:!||| !:!!:!!||||||{|} 330 bp ArgValArgPheGluGluLysIleGlu{A}++ 3152756 : AGAGTGAGATTCGAGGAGAAAATCGAG{A}gt........................ : 3152788 122 : > {rg}AsnThrIleThrTyrAlaLeuIleIleAspValTyrValValAlaThrI : 138 {||}|||.!!! .!!|||.!!! !.!!:!:|||:!!! ||||||!.! ! --{rg}AsnAlaLysAlaTyrThrTyrPheLeuAspIleLeuValValValLeuT 3152789 : .tt{GG}AACGCTAAGGCTTACACATATTTCCTGGACATCTTGGTAGTCGTTTTAT : 3153166 139 : leIleIleSerPhePheThrAspTyrArgHisGlyGlyLeuLysPheArgAlaTrp : 156 |||! !|||!:!|||||||||||||||... ...|||||||||..!||| rpIleThrSerTyrPheThrAspTyrArgArgArgLysPheLysPheArgValTrp 3153167 : GGATAACATCGTACTTCACGGACTACAGGcgcagaaaattcaaatttcgcgtCTGG : 3153220 157 : LeuProTyrAspTyrSerSerProLeuLeuPheThrValThrTyrValHisGlnMe : 175 |||||||||||| !!!!!!!! !! !:!!||||||:!!! !||| !!!.|||!! LeuProTyrAspThrThrThrGlnProValPheThrLeuIleTyrCysGlnGlnIl 3153221 : TTACCTTACGACACTACTACACAACCTGTCTTCACTCTGATCTACTGTCAACAGAT : 3153277 176 : tValValMetValPheAlaThrAsnPheIleValAlaCysAspSerLeuPheSerG : 194 :||| !! ! !!:!::!..!|||.!!! !||| !||||||!!!|||||||||| eValCysThrTrpTyrSerValAsnIleAsnValIleCysAspCysLeuPheSerG 3153278 : CGTCTGCACGTGGTACAGCGTGAATATTAACGTCATTTGCGACTGCCTGTTCAGCG : 3153334 195 : lyLeuLeuValAsnIleTyrCysGlnPheGluLeu >>>> Target Intron : 206 |||||:!!:!!.!.|||! !! !!...! ! 57 bp lyLeuMetIleGlnIleCysSerIleLeuArgLys-+ 3153335 : GCCTGATGATACAGATTTGCTCAATCTTACGGAAGat................... : 3153372 207 : 2 >>>> LeuGluTyrArgLeuLysAsnValGluLysPheAlaThrAlaValAsn : 221 ! !... ...:::|||... !!!.||| ! !|||||| ++SerArgGlnGluIleLysArgTyrVal***LeuAlaGlnIleValAsn 3153373 : ......agTCTCGacaagaaattaaacgatacgTTTGATTGGCGCAAATAGTGAAC : 3153472 222 : GluValPheThrAlaIleIleSerIleGlnPheIleValAsnThrPheAlaLeuCy : 240 ||| !.!! ! !:!! |||||||||||| :!!!:!||| |||:!!|| GluLysLeuGlyAsnValSerSerIleGlnPheAlaIleSerThrGlyAlaIleCy 3153473 : GAGAAGCTTGGAAATGTCTCGAGTATACAGTTCGCGATAAGCACAGGAGCGATATG : 3153529 241 : sPheAsnHisTyrArgLeuSerGlnLeuGluPheGlyAlaLysPheGlyGluAlaA : 259 |||||||! !||||||:!!||| !:!!|||.!!||| !!||||||! !|||||| sPheAsnLeuTyrArgMetSerValIleGluLeuGlyProLysPheValGluAlaL 3153530 : CTTCAATCTCTATCGAATGTCGGTGATAGAACTCGGTCCAAAGTTTGTGGAAGCGT : 3153586 260 : laAlaPheMetPheCysValLeuAlaGlnIlePheTyrTyrCysTrpTyrGlyAsn : 277 !.!!.!!! ! |||:!!|||||||||||||||||||||||||||||||||||| euThrIleThrValCysLeuLeuAlaGlnIlePheTyrTyrCysTrpTyrGlyAsn 3153587 : TAACTATCACAGTATGCTTACTCGCGCAGATATTTTACTATTGTTGGTAcggtaac : 3153640 278 : GluValLysLeuLys >>>> Target Intron 3 >>>> SerLeuThrIle : 286 ::: ... ! 53 bp |||||| !||| AspArgAsnTyrAsp-- ++SerLeuGluIle 3153641 : gatagaaattacgATag.........................agAGTCTCGAAATT : 3153720 287 : ValAspValAlaLeuAspSerThrLeuMetSerLeuAspAsnSerThrLysLysMe : 305 |||||| !!.! !:!!|||!.!:!!! !! !|||.!.|||:!!||||||!! ValAspArgValThrAsnSerAsnIleThrValSerAspGluSerSerLysLysIl 3153721 : GTGGACAGAGTAACGAACAGTAATATAACCGTGTCGGACGAAAGCTCCAAGAAGAT : 3153777 306 : tPheLeuThrIleThrMetArgAlaMetGluProIleGlnPheThrSerIleHisI : 324 :.!.:!! !!!:! ! ||||||:!!||||||:!!:!!||||||.!!:!!!.!| eLeuValLeuMetIleArgArgAlaLeuGluProValGluPheThrGlyLeuArgI 3153778 : TCTGGTATTGATGATACGACGAGCTTTGGAGCCTGTCGAGTTCACCGGCCTTCGTA : 3153834 325 : leValSerMetAsnLeuGluSerPheIleThrLeu : 335 ||:!!|||:!:|||||||||||||||! :!!:!! leMetSerValAsnLeuGluSerPheThrSerVal 3153835 : TCATGTCTGTTAATCTCGAGTCATTCACGTCGGTT : 3153869 vulgar: gi|805795879|ref|XP_012143129.1| 0 335 . KQ414646.1 3152421 3153869 + 638 M 52 156 G 0 3 M 68 204 S 0 1 5 0 2 I 0 326 3 0 2 S 1 2 M 84 252 5 0 2 I 0 53 3 0 2 M 77 231 5 0 2 I 0 49 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3152422 3153869 638 + . gene_id 1 ; sequence gi|805795879|ref|XP_012143129.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3152422 3152785 . + . KQ414646.1 exonerate:protein2genome:local exon 3152422 3152785 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3152786 3152787 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3152786 3153115 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3153114 3153115 . + . intron_id 0 ; splice_site "TT" KQ414646.1 exonerate:protein2genome:local cds 3153116 3153369 . + . KQ414646.1 exonerate:protein2genome:local exon 3153116 3153369 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3153370 3153371 . + . intron_id 2 ; splice_site "AT" KQ414646.1 exonerate:protein2genome:local intron 3153370 3153426 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3153425 3153426 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3153427 3153657 . + . KQ414646.1 exonerate:protein2genome:local exon 3153427 3153657 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3153658 3153659 . + . intron_id 3 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local intron 3153658 3153710 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3153709 3153710 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3153711 3153869 . + . KQ414646.1 exonerate:protein2genome:local exon 3153711 3153869 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3152422 3153869 638 + . alignment_id 1 ; Query gi|805795879|ref|XP_012143129.1| ; Align 3152422 1 156 ; Align 3152581 53 204 ; Align 3153118 122 252 ; Align 3153427 206 231 ; Align 3153711 283 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795879|ref|XP_012143129.1| PREDICTED: odorant receptor 45a [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 502 Query range: 121 -> 348 Target range: 3164322 -> 3165536 122 : AsnThrIleThrTyrAlaLeuIleIleAspValTyrValValAlaThrIleIleIl : 140 ||||||||| !||| ! !:!!:!! :!!! !!.! !! !! ! !:!:! AsnThrIleGlyTyrTrpSerLeuLeuLeuIleCysAlaPheTrpIleTyrValAr 3164323 : AACACGATTGGCTACTGGAGTTTACTATTAATTTGTGCGTTCTGGATATACGTGAG : 3164377 141 : eSerPhePheThrAspTyrArgHisGlyGlyLeuLysPheArgAlaTrpLeuProT : 159 !|||.!!!!.||||||!:!!!! ! !! !|||! !||||||||||||||||||| gSerLeuLeuThrAspPheSerSerArgLysLeuMetPheArgAlaTrpLeuProT 3164378 : ATCGCTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGCATGGTTACCCT : 3164434 160 : yrAspTyrSerSerProLeuLeuPheThrValThrTyrValHisGlnMetValVal : 177 ||||||||||| !! !!! !:!!|||! !:!!|||!:!||||||||| :!!!.! yrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAlaIleAla 3164435 : ACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCC : 3164488 178 : MetValPheAlaThrAsnPheIleValAlaCysAspSerLeuPheSerGlyLeuLe : 196 !..!.!...! !!.!! ! !|||.!! |||||||||!:!!!!|||||||| AlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLe 3164489 : GCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTT : 3164545 197 : uValAsnIleTyrCysGlnPheGluLeuLeuGluTyrArgLeuLysAsn >>>> : 213 |:!!|||||||||||||||||||||:!!||||||:!!||||||!:!||| uIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsn++ 3164546 : GATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACgt..... : 3164598 214 : Target Intron 1 >>>> ValGluLysPheAlaThrAlaValAsnGluValP : 224 379 bp ..! !:!|||:!!! ! !|||||||||! !| +-ThrCysArgPheSerLysLysValAsnGluGluP 3164599 : ....................aaACTTGCAGATTTTCGAAAAAGGTGAACGAAGAAT : 3165008 225 : heThrAlaIleIleSerIleGlnPheIleValAsnThrPheAlaLeuCysPheAsn : 242 ||! ! !|||:!:! ! !|||||| !:!!!:!! !! !.!:!!||||||||| heLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIleCysPheAsn 3165009 : TCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTTCAAT : 3165062 243 : HisTyrArgLeuSerGlnLeuGluPheGlyAlaLysPheGlyGluAlaAlaAlaPh : 261 ! !||||||:!!!!!|||:!!:!!.!.! ...|||||| ||| ! !!: LeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIleIleLeuTy 3165063 : CTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaatcaTACTCTA : 3165119 262 : eMetPheCysValLeuAlaGlnIlePheTyrTyrCysTrpTyrGlyAsnGluValL : 280 ! ||||||..!:!!.!!||||||||||||||||||||||||||||||||||||| rSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGluValL 3165120 : CTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGGCAACGAAGTGA : 3165176 281 : ysLeuLys >>>> Target Intron 2 >>>> SerLeuThrIleValAspV : 289 ||! !||| 80 bp |||||| !:!! ! !!: ysHisLys++ ++SerLeuGlnLeuProTyrM 3165177 : AACATAAGgt.........................agAGCCTCCAACTTCCATACA : 3165283 290 : alAlaLeuAspSerThrLeuMetSerLeuAspAsnSerThrLysLysMetPheLeu : 307 !! !!!! !!||| !! !! !||||||:!!|||!:!..!! !:! .!!||| etIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArgAlaLeuLeu 3165284 : TGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGAGCACTTTTA : 3165337 308 : ThrIleThrMetArgAlaMetGluProIleGlnPheThrSerIleHisIleValSe : 326 ! !!!:! !! ||||||:!!..!||||||:!!|||||||||||||||:!!||||| IleMetMetArgArgAlaValArgProIleGluPheThrSerIleHisValValSe 3165338 : ATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCACGTTGTCTC : 3165394 327 : rMetAsnLeuGluSerPheIleThr >>>> Target Intron 3 >>>> Le : 335 |:!!|||||||||||||||!!:.!! 74 bp :! rValAsnLeuGluSerPheMetAla++ ++Va 3165395 : TGTGAATCTCGAATCCTTCATGGCAgt.........................agGT : 3165495 336 : uValLysThrSerTyrSerAlaTyrThrMetLeuGlnGln : 348 !:!!||||||||||||||||||!:!!.!|||:!!|||||| lIleLysThrSerTyrSerAlaPheAsnMetIleGlnGln 3165496 : AATAAAAACTTCGTACTCCGCGTTCAACATGATCCAACAA : 3165536 vulgar: gi|805795879|ref|XP_012143129.1| 121 348 . KQ414646.1 3164322 3165536 + 502 M 91 273 5 0 2 I 0 375 3 0 2 M 70 210 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164323 3165536 502 + . gene_id 2 ; sequence gi|805795879|ref|XP_012143129.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3164323 3164595 . + . KQ414646.1 exonerate:protein2genome:local exon 3164323 3164595 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164596 3164597 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164596 3164974 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3164973 3164974 . + . intron_id 0 ; splice_site "AA" KQ414646.1 exonerate:protein2genome:local cds 3164975 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164975 3165184 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165185 3165186 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165185 3165264 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3165263 3165264 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165265 3165420 . + . KQ414646.1 exonerate:protein2genome:local exon 3165265 3165420 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165421 3165422 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165421 3165494 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3165493 3165494 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165495 3165536 . + . KQ414646.1 exonerate:protein2genome:local exon 3165495 3165536 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164323 3165536 502 + . alignment_id 2 ; Query gi|805795879|ref|XP_012143129.1| ; Align 3164323 122 273 ; Align 3164975 213 210 ; Align 3165265 283 156 ; Align 3165495 335 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795879|ref|XP_012143129.1| PREDICTED: odorant receptor 45a [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 486 Query range: 121 -> 348 Target range: 3157794 -> 3159008 122 : AsnThrIleThrTyrAlaLeuIleIleAspValTyrValValAlaThrIleIleIl : 140 ||||||||| !||| ! :::::: ::: ..! !! !! ! !:!:! AsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrValAr 3157795 : AACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATATACGTGAG : 3157849 141 : eSerPhePheThrAspTyrArgHisGlyGlyLeuLysPheArgAlaTrpLeuProT : 159 !|||.!!!!.! !|||!:!!!!:!! !! !|||! !||||||||||||:!!|||| gSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProT 3157850 : ATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCT : 3157906 160 : yrAspTyrSerSerProLeuLeuPheThrValThrTyrValHisGlnMetValVal : 177 ||||||||||| !! !!! !:!!|||! !:!!|||! !||||||||| :!!!.! yrAspTyrSerProAlaProIlePheIleLeuThrSerValHisGlnAlaIleAla 3157907 : ACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTCCGTCCATCAAGCTATAGCC : 3157960 178 : MetValPheAlaThrAsnPheIleValAlaCysAspSerLeuPheSerGlyLeuLe : 196 !..!.!...! !!.!! ! !|||.!! |||!!!|||!:!!!!|||||||| SerThrIleCysCysThrSerThrValThrValAspThrLeuTyrThrGlyLeuLe 3157961 : TCGACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTATACACTGGCTTGTT : 3158017 197 : uValAsnIleTyrCysGlnPheGluLeuLeuGluTyrArgLeuLysAsn >>>> : 213 |:!!|||||||||||||||||||||:!!||||||:!!||||||!:!||| uIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsn++ 3158018 : GATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACgt..... : 3158070 214 : Target Intron 1 >>>> ValGluLysPheAlaThrAlaValAsnGluValP : 224 379 bp ..! !:!|||:!!! ! !|||||||||! !| +-ThrCysArgPheSerLysLysValAsnGluGluP 3158071 : ....................aaACTTGCAGATTTTCGAAAAAGGTGAACGAAGAAT : 3158480 225 : heThrAlaIleIleSerIleGlnPheIleValAsnThrPheAlaLeuCysPheAsn : 242 ||! ! !|||:!:! ! !|||||| !:!!!:!! !! !.!:!!||||||||| heLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIleCysPheAsn 3158481 : TCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTTCAAT : 3158534 243 : HisTyrArgLeuSerGlnLeuGluPheGlyAlaLysPheGlyGluAlaAlaAlaPh : 261 ! !||||||:!!!!!|||:!!:!!.!.! ...|||||| ||| ! !!: LeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIleIleLeuTy 3158535 : CTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaatcaTACTCTA : 3158591 262 : eMetPheCysValLeuAlaGlnIlePheTyrTyrCysTrpTyrGlyAsnGluValL : 280 ! ||||||..!:!!.!!||||||||||||||||||||||||||||||||||||| rSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGluValL 3158592 : CTCTTTCTGCACTATCACGCAGATATTTTACTATTGTTGGTACGGCAACGAAGTGA : 3158648 281 : ysLeuLys >>>> Target Intron 2 >>>> SerLeuThrIleValAspV : 289 || !||| 80 bp |||||| !:!! ! !!: ysAspLys++ ++SerLeuGlnLeuProTyrM 3158649 : AAGATAAGgt.........................agAGCCTCCAACTTCCATACA : 3158755 290 : alAlaLeuAspSerThrLeuMetSerLeuAspAsnSerThrLysLysMetPheLeu : 307 !! !!!! !!||| !! !! !||||||:!!|||!:!..!! !:! .!!||| etIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArgAlaLeuLeu 3158756 : TGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGAGCACTTTTA : 3158809 308 : ThrIleThrMetArgAlaMetGluProIleGlnPheThrSerIleHisIleValSe : 326 ! !!!:! !! ||||||:!!..!||||||:!!|||||||||||||||:!!||||| IleMetMetArgArgAlaValArgProIleGluPheThrSerIleHisValValSe 3158810 : ATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCACGTTGTCTC : 3158866 327 : rMetAsnLeuGluSerPheIleThr >>>> Target Intron 3 >>>> Le : 335 |:!!|||||||||||||||!!:.!! 74 bp :! rValAsnLeuGluSerPheMetAla++ ++Va 3158867 : TGTGAATCTCGAATCCTTCATGGCAgt.........................agGT : 3158967 336 : uValLysThrSerTyrSerAlaTyrThrMetLeuGlnGln : 348 !:!!||||||:!!|||||||||!:!!.!|||:!!|||||| lIleLysThrAlaTyrSerAlaPheAsnMetIleGlnGln 3158968 : AATAAAAACTGCGTACTCCGCGTTCAACATGATCCAACAA : 3159008 vulgar: gi|805795879|ref|XP_012143129.1| 121 348 . KQ414646.1 3157794 3159008 + 486 M 91 273 5 0 2 I 0 375 3 0 2 M 70 210 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157795 3159008 486 + . gene_id 3 ; sequence gi|805795879|ref|XP_012143129.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3157795 3158067 . + . KQ414646.1 exonerate:protein2genome:local exon 3157795 3158067 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158068 3158069 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158068 3158446 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3158445 3158446 . + . intron_id 0 ; splice_site "AA" KQ414646.1 exonerate:protein2genome:local cds 3158447 3158656 . + . KQ414646.1 exonerate:protein2genome:local exon 3158447 3158656 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158657 3158658 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158657 3158736 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3158735 3158736 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158737 3158892 . + . KQ414646.1 exonerate:protein2genome:local exon 3158737 3158892 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158893 3158894 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158893 3158966 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3158965 3158966 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158967 3159008 . + . KQ414646.1 exonerate:protein2genome:local exon 3158967 3159008 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157795 3159008 486 + . alignment_id 3 ; Query gi|805795879|ref|XP_012143129.1| ; Align 3157795 122 273 ; Align 3158447 213 210 ; Align 3158737 283 156 ; Align 3158967 335 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795879|ref|XP_012143129.1| PREDICTED: odorant receptor 45a [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 362 Query range: 122 -> 332 Target range: 3160062 -> 3161151 123 : ThrIleThrTyrAlaLeuIleIleAspValTyrValValAlaThrIleIleIleSe : 141 :!!!!:.!!|||.!!:!! !! !! :!! !!.!..!!.!..! !!::!:|| SerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValTrpMetLeuSe 3160063 : TCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTATGGATGTTGTC : 3160117 142 : rPhePheThrAspTyrArgHisGlyGlyLeuLysPheArgAlaTrpLeuProTyrA : 160 | !.!.|||! !:!||| ! !!! !||| .!!|||!.!|||||||||!:!| rAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrpLeuProPheA 3160118 : GGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGGTTACCTTTCG : 3160174 161 : spTyrSerSerProLeu<->LeuPheThrValThrTyrValHisGlnMetValVal : 177 |||||!!!:!! !!||| :!!|||!:!:!!||||||!.!:!!|||.!.|||..! spTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGlnPheValThr 3160175 : ATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAGTTTGTAACT : 3160228 178 : MetValPheAlaThrAsnPheIleValAlaCysAspSerLeuPheSerGlyLeuLe : 196 :!!:!!||| !|||!.! |||:!!!.! !|||!:!||||||||||||||||| LeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheSerGlyLeuLe 3160229 : CTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCAGCGGACTGTT : 3160285 197 : uValAsnIleTyrCysGlnPheGluLeuLeuGluTyrArgLeuLysAsnValGluL : 215 |:!!:!!||||||||||||||||||:!!|||:!!:!!|||||||||!:!:!!:!! uIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysSerIleLysP 3160286 : GATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGAGCATTAAAC : 3160342 216 : ysPhe{A} >>>> Target Intron 1 >>>> {la}ThrAlaValAsnGlu : 222 !{.} 382 bp {!!} ! !:!!|||! ! roAsp{T}+- -+{hr}GluIleIleAsnAla 3160343 : CTGAC{A}gg.........................cg{CT}GAAATTATAAACGCG : 3160745 223 : ValPheThrAlaIleIleSerIleGlnPheIleValAsnThrPheAlaLeuCysPh : 241 !|||!:! !! !!::!!! ||||||:!:|||!.!|||.!..!!:!!||||| LysPheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThrMetCysPh 3160746 : AAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACAATGTGCTT : 3160802 242 : eAsnHisTyrArgLeuSerGlnLeuGluPheGlyAlaLysPheGlyGluAlaAlaA : 260 ||||! !!:!||||||!!!||| !:!! ! !:!!:!! !! !! ! ! ! eAsnLeuPheArgLeuThrGlnThrLysValTyrSerGlnValLeuAlaLeuIleP 3160803 : CAACCTCTTTCGACTGACACAGACCAAGGTGTATTCGCAAGTTTTAGCATTGATAC : 3160859 261 : laPheMetPheCysValLeuAlaGlnIlePheTyrTyrCysTrpTyrGlyAsnGlu : 278 !!|||||| !! !!|||!!!|||||||||||||||! !|||||||||||||||||| roPheMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnGlu 3160860 : CGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACGAG : 3160913 279 : ValLysLeuLys{Se} >>>> Target Intron 2 >>>> {r}LeuThrIl : 286 ..!|||:!!|||{ } 74 bp {!}||| !|| ThrLysValLys{Va}-- ++{l}LeuGluIl 3160914 : ACCAAAGTGAAG{GT}ac.........................ag{C}CTTGAAAT : 3161011 287 : eValAspValAlaLeuAspSerThrLeuMetSerLeuAspAsnSerThrLysLysM : 305 | !|||..!!.!!!!!!:|||!.!! !! !:!!|||..!.!.||||||||||||! eCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSerThrLysLysT 3161012 : TTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAGCACCAAAAAGA : 3161068 306 : etPheLeuThrIleThrMetArgAlaMetGluProIleGlnPheThrSerIleHis : 323 .!!|||||||||! !:!:|||:!!:!!:!!||||||:!!||||||.!! ! ! hrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheThrGlyAlaPhe 3161069 : CACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCACCGGCGCTTTC : 3161122 324 : IleValSerMetAsnLeuGluSerPhe : 332 :!! !! !!:!:||||||||||||||| ValPheProValAsnLeuGluSerPhe 3161123 : GTTTTCCCCGTAAATTTGGAGTCTTTT : 3161151 vulgar: gi|805795879|ref|XP_012143129.1| 122 332 . KQ414646.1 3160062 3161151 + 362 M 43 129 G 0 3 M 51 153 S 0 1 5 0 2 I 0 378 3 0 2 S 1 2 M 65 195 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160063 3161151 362 + . gene_id 4 ; sequence gi|805795879|ref|XP_012143129.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3160063 3160348 . + . KQ414646.1 exonerate:protein2genome:local exon 3160063 3160348 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3160349 3160350 . + . intron_id 1 ; splice_site "GG" KQ414646.1 exonerate:protein2genome:local intron 3160349 3160730 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3160729 3160730 . + . intron_id 0 ; splice_site "CG" KQ414646.1 exonerate:protein2genome:local cds 3160731 3160929 . + . KQ414646.1 exonerate:protein2genome:local exon 3160731 3160929 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3160930 3160931 . + . intron_id 2 ; splice_site "AC" KQ414646.1 exonerate:protein2genome:local intron 3160930 3161003 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3161002 3161003 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3161004 3161151 . + . KQ414646.1 exonerate:protein2genome:local exon 3161004 3161151 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160063 3161151 362 + . alignment_id 4 ; Query gi|805795879|ref|XP_012143129.1| ; Align 3160063 123 129 ; Align 3160195 166 153 ; Align 3160733 218 195 ; Align 3161005 284 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795879|ref|XP_012143129.1| PREDICTED: odorant receptor 45a [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 282 Query range: 122 -> 284 Target range: 3150041 -> 3150814 123 : ThrIleThrTyrAlaLeuIleIleAspValTyrValValAlaThrIleIleIleSe : 141 |||||| !|||.!!:!!:!::!:!!::!! |||:!!..!! !|||:!! !|| ThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCysMetIleLeuSerSe 3150042 : ACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTGTATGATCCTCTCTTC : 3150096 142 : rPhePheThrAspTyrArgHisGlyGlyLeuLysPheArgAlaTrpLeuProTyrA : 160 |!!..!! !|||!:!!.!.!. !!! !||| !!:!|||||||||||||||!:!| rLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgAlaTrpLeuProPheA 3150097 : GTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAGCCTGGCTGCCCTTCG : 3150153 161 : spTyrSerSerProLeuLeuPheThrValThrTyrValHisGlnMetValValMet : 178 |||||||| !||| !! !!:! !:!!.!!||||||||||||!!:|||!.!:!! spTyrSerLeuProThrTyrTyrTyrIleAlaTyrValHisGlnIleValAlaLeu 3150154 : ATTACTCTCTGCCAACTTACTATTACATCGCGTACGTTCATCAGATCGTCGCGCTG : 3150207 179 : ValPheAlaThrAsnPheIleValAlaCysAspSerLeuPheSerGlyLeuLeuVa : 197 :!! !.!!:!! !! ! !|||||||||||| !:!!.!!!!!||||||||||| IleGlyThrSerLeuSerAsnValAlaCysAspValIleIleCysGlyLeuLeuVa 3150208 : ATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCATCTGCGGGTTGCTCGT : 3150264 198 : lAsnIleTyrCysGlnPheGluLeuLeuGluTyrArgLeuLysAsnValGlu{Ly} : 215 |:!! !! ! !!||| |||:!!|||:!!:!!|||:!!|||.!.:!! !{:!} lHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMetLysGluMetThr{Gl} 3150265 : TCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATGAAGGAGATGACG{CA} : 3150318 216 : >>>> Target Intron 1 >>>> {s}PheAlaThrAlaValAsnGluVal : 223 284 bp {!}!:!!.! !.!!:!!.!.||| ! +- ++{n}TyrValPheThrMetGlnGluLys 3150319 : gg.........................ag{G}TACGTTTTCACGATGCAAGAGAAG : 3150626 224 : PheThrAlaIleIleSerIleGlnPheIleValAsnThrPheAlaLeuCysPheAs : 242 |||! ! !||||||.!!:!:|||.!!:!! !!:!|||.!.!.!:!!||||||! PheArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuValValCysPheIl 3150627 : TTCAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGGTAGTGTGTTTCAT : 3150683 243 : nHisTyrArgLeuSerGlnLeu<->GluPheGlyAlaLysPheGlyGluAlaAlaA : 260 !! |||..!|||:!!.!. ! !.!!.!!:!!|||!:! !:!! !!.! eLeuTyrGluLeuAlaAsnThrProProIleSerSerLysTyrLeuGlnPheValL 3150684 : CCTGTACGAATTGGCGAACACGCCTCCAATCAGCTCCAAGTACCTGCAATTTGTCC : 3150740 261 : laPheMetPheCysValLeuAlaGlnIlePheTyrTyrCysTrpTyrGlyAsnGlu : 278 !!:!:!! !|||:!!:!!.!!|||||||||!:!|||||||||||||||.!.:!! euTyrLeuAlaCysMetMetThrGlnIlePhePheTyrCysTrpTyrGlyGluGln 3150741 : TGTACCTGGCCTGTATGATGACGCAGATCTTCTTTTACTGCTGGTACGGCGAGCAG : 3150794 279 : ValLysLeuLysSerLeu : 284 :!!||||||||| !||| LeuLysLeuLysValLeu 3150795 : TTGAAACTGAAGGTACTG : 3150814 vulgar: gi|805795879|ref|XP_012143129.1| 122 284 . KQ414646.1 3150041 3150814 + 282 M 92 276 S 0 2 5 0 2 I 0 280 3 0 2 S 1 1 M 34 102 G 0 3 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150042 3150814 282 + . gene_id 5 ; sequence gi|805795879|ref|XP_012143129.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3150042 3150319 . + . KQ414646.1 exonerate:protein2genome:local exon 3150042 3150319 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150320 3150321 . + . intron_id 1 ; splice_site "GG" KQ414646.1 exonerate:protein2genome:local intron 3150320 3150603 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150602 3150603 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150604 3150814 . + . KQ414646.1 exonerate:protein2genome:local exon 3150604 3150814 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150042 3150814 282 + . alignment_id 5 ; Query gi|805795879|ref|XP_012143129.1| ; Align 3150042 123 276 ; Align 3150605 216 102 ; Align 3150710 250 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795879|ref|XP_012143129.1| PREDICTED: odorant receptor 45a [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 253 Query range: 120 -> 282 Target range: 3155400 -> 3156012 121 : ArgAsnThrIleThrTyrAlaLeuIleIleAspValTyrValValAlaThrIleIl : 139 |||!..!:! !|||||| ! !|||:!:! !! !! ..!||| !|||:!: ArgArgSerSerThrTyrTyrAlaIleLeuValGluSerThrValMetThrLeuSe 3155401 : AGAAGAAGCTCAACCTATTACGCGATTCTGGTCGAATCGACGGTGATGACTTTGTC : 3155455 140 : eIleSerPhePheThrAspTyrArgHisGlyGlyLeuLysPheArgAlaTrpLeuP : 158 !.!!.!! .!. ! ! ..! !! !||| !!:!||| !||||||| rPheGlyAlaLeuLeuLysProGluSerArgProLeuProTyrArgIleTrpLeuP 3155456 : TTTCGGTGCACTGTTGAAACCAGAATCACGTCCTTTACCGTATCGAATTTGGCTAC : 3155512 159 : roTyrAspTyrSerSerProLeuLeuPheThrValThrTyrValHisGlnMetVal : 176 ||! !:!!|||!!! !! !:!! !!:! ! !! !|||..!! !||| ||| roCysAsnTyrThrProLeuIleThrTyrCysSerIleTyrThrLeuGlnCysVal 3155513 : CTTGCAATTACACCCCGTTAATTACTTACTGTTCGATTTACACTCTCCAATGTGTG : 3155566 177 : ValMetValPheAlaThrAsnPheIleValAlaCysAspSerLeuPheSerGlyLe : 195 !.!:!:!.!.!.::!.!!! .!. !||||||||||||||||||.!!!!!||||| AlaLeuAlaLeuSerAlaMetMetHisValAlaCysAspSerLeuIleCysGlyLe 3155567 : GCACTCGCTCTAAGCGCTATGATGCACGTCGCCTGCGACAGTTTGATCTGCGGCCT : 3155623 196 : uLeuValAsnIleTyrCysGlnPheGluLeuLeuGluTyrArgLeuLysAsnValG : 214 ||||:!!:!!! !||| !!|||.!!|||:!!|||! ! !|||||||||...:::: uLeuLeuHisThrTyrGlyGlnIleGluIleLeuGlyCysArgLeuLysThrIleL 3155624 : GCTGTTACACACTTACGGCCAGATCGAGATCCTCGGTTGTCGTCTGAaaacgataa : 3155680 215 : luLysPheAla{T} >>>> Target Intron 1 >>>> {hr}AlaValAsn : 221 ::::: {|} 123 bp {||} !:!!||| ysGluAsnGlu{T}++ -+{hr}MetIleAsn 3155681 : aagaaaacgag{a}gt.........................cg{CT}ATGATAAAC : 3155824 222 : GluValPheThrAlaIleIleSerIleGlnPheIleValAsnThrPheAlaLeuCy : 240 ||| !||| ! ! |||! !! !|||||| |||!:!|||.!.|||:!!|| GluGlnPheGluMetAlaIlePheThrGlnPheAlaValSerThrLeuAlaIleCy 3155825 : GAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGTGAGTACGCTGGCGATATG : 3155881 241 : sPheAsnHisTyrArgLeuSerGlnLeuGluPhe<->GlyAlaLysPheGlyGluA : 258 |||||||! !|||! !|||!!! !! !!!: ! ! !!:!!:!! !||| sPheAsnLeuTyrLeuLeuThrGlySerAspValThrProIleArgTyrValGluI 3155882 : CTTCAATCTTTACCTATTAACAGGATCAGATGTGACGCCGATTAGGTATGTGGAAA : 3155938 259 : laAlaAlaPheMetPheCysValLeuAlaGlnIlePheTyrTyrCysTrpTyrGly : 276 ! ! !!:!! !|||:!!|||.!!||||||||| !||||||||||||||| leIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysTrpTyrGly 3155939 : TAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTGGTACGGG : 3155992 277 : AsnGluValLysLeuLys : 282 |||||||||||||||||| AsnGluValLysLeuLys 3155993 : AACGAAGTTAAGCTGAAG : 3156012 vulgar: gi|805795879|ref|XP_012143129.1| 120 282 . KQ414646.1 3155400 3156012 + 253 M 97 291 S 0 1 5 0 2 I 0 119 3 0 2 S 1 2 M 33 99 G 0 3 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155401 3156012 253 + . gene_id 6 ; sequence gi|805795879|ref|XP_012143129.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3155401 3155692 . + . KQ414646.1 exonerate:protein2genome:local exon 3155401 3155692 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3155693 3155694 . + . intron_id 1 ; splice_site "gt" KQ414646.1 exonerate:protein2genome:local intron 3155693 3155815 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3155814 3155815 . + . intron_id 0 ; splice_site "CG" KQ414646.1 exonerate:protein2genome:local cds 3155816 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155816 3156012 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155401 3156012 253 + . alignment_id 6 ; Query gi|805795879|ref|XP_012143129.1| ; Align 3155401 121 291 ; Align 3155818 219 99 ; Align 3155920 252 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795879|ref|XP_012143129.1| PREDICTED: odorant receptor 45a [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 242 Query range: 119 -> 282 Target range: 3180047 -> 3180667 120 : GluArgAsnThrIleThrTyrAlaLeuIleIleAspValTyrValValAlaThrIl : 138 ..!!:!|||.!!:!!! !|||.!!:!!:!!:!!!!::!!! |||!.!:!!||||| ArgLysAsnAlaValArgTyrThrMetValValGluMetSerValAlaSerThrIl 3180048 : AGGAAAAACGCTGTCAGATACACAATGGTAGTCGAGATGTCGGTCGCCTCGACTAT : 3180102 139 : eIleIleSerPhePheThrAspTyrArgHisGlyGlyLeuLysPheArgAlaTrpL : 157 |:!!! !|||!!. ! |||:!!!:!!:!|||||| !!|||! !:!|||!.!|||! eLeuAsnSerLeuValThrAsnPheGlnHisGlyArgLeuThrTyrArgGlyTrpP 3180103 : TTTAAACTCGTTAGTGACCAACTTTCAACACGGCAGACTAACCTACAGAGGCTGGT : 3180159 158 : euProTyrAspTyrSerSerProLeuLeuPheThrValThrTyrValHisGlnMet : 175 !!||||||||||||!!!!!! !!:!!|||||| !!:!!||||||!.!! |||:!: heProTyrAspTyrThrThrAlaValLeuPheProLeuThrTyrAlaLeuGlnLeu 3180160 : TCCCTTACGATTACACGACCGCCGTACTTTTTCCATTGACATACGCTCTGCAGCTA : 3180213 176 : ValValMetValPheAlaThrAsnPheIleValAlaCysAspSerLeuPheSerGl : 194 :!! !:!!:!! ! !:!! .!! !|||:!! |||! !||||||! !|| LeuCysValLeuValTyrSerTrpIleHisValSerValAspIleLeuPhePheGl 3180214 : TTATGCGTGCTCGTATATTCCTGGATCCACGTTTCAGTGGATATTCTCTTCTTCGG : 3180270 195 : yLeuLeuValAsnIleTyrCysGlnPheGluLeuLeuGluTyrArgLeuLysAsnV : 213 |||||||:!!.!.:!:! !|||||||||!!::::||| |||...!..!:!: yLeuLeuMetGlnLeuCysCysGlnPheAspIleLeuPheSerArgPheSerSerI 3180271 : ACTGTTGATGCAACTGTGCTGTCAATTCGAcattctcttctctcgtttcAGTAGCA : 3180327 214 : alGlu{Ly} >>>> Target Intron 1 >>>> {s}PheAlaThrAlaVal : 220 !! !{..} 128 bp {.}!!.||| ! !:!! leThr{Se}+- ++{r}LeuAlaGluIleMet 3180328 : TAACG{TC}gg.........................ag{T}TTAGCTGAAATAATG : 3180476 221 : AsnGluValPheThrAlaIleIleSerIleGlnPheIleValAsnThrPheAlaLe : 239 |||!!: !.!. ! !! !!:! ! !||||||.!!! !!:! !.!.!.!:! AsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePheGlySerPheMetValIl 3180477 : AACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTTCGGAAGCTTTATGGTGAT : 3180533 240 : uCysPheAsnHisTyrArgLeuSerGlnLeuGlu<->PheGlyAlaLysPheGlyG : 257 !|||.!.!:!! !!:!|||! !.!. !!!: .!!.!!.!!:!!||| !! eCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleLeuSerThrGluPheLeuA 3180534 : CTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTCTCAGCACCGAATTCTTAG : 3180590 258 : luAlaAlaAlaPheMetPheCysValLeuAlaGlnIlePheTyrTyrCysTrpTyr : 275 !.!! :::::: ::!||| !|||! !||| !|||||||||||| laThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPheLeuTyrCysTrpTyr 3180591 : CGACGAtattttatctgagctcgatACTGCTGCAGAGCTTTCTTTACTGTTGGTAC : 3180644 276 : GlyAsnGluValLysLeuLys : 282 ||||||||||||!:! !||| GlyAsnGluValArgThrLys 3180645 : GGAAACGAAGTGAGAACGAAG : 3180667 vulgar: gi|805795879|ref|XP_012143129.1| 119 282 . KQ414646.1 3180047 3180667 + 242 M 95 285 S 0 2 5 0 2 I 0 124 3 0 2 S 1 1 M 35 105 G 0 3 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180048 3180667 242 + . gene_id 7 ; sequence gi|805795879|ref|XP_012143129.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3180048 3180334 . + . KQ414646.1 exonerate:protein2genome:local exon 3180048 3180334 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3180335 3180336 . + . intron_id 1 ; splice_site "GG" KQ414646.1 exonerate:protein2genome:local intron 3180335 3180462 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3180461 3180462 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3180463 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180463 3180667 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180048 3180667 242 + . alignment_id 7 ; Query gi|805795879|ref|XP_012143129.1| ; Align 3180048 120 285 ; Align 3180464 216 105 ; Align 3180572 251 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795879|ref|XP_012143129.1| PREDICTED: odorant receptor 45a [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 224 Query range: 211 -> 332 Target range: 3174925 -> 3175362 212 : AsnValGluLysPheAlaThrAlaValAsnGluValPheThrAlaIleIleSerIl : 230 |||! ! !:!|||||| ! !:!!|||! ! !|||!:! !! !!::!!! AsnAspPheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaTh 3174926 : AATGATTTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCAC : 3174980 231 : eGlnPheIleValAsnThrPheAlaLeuCysPheAsnHisTyrArgLeuSerGlnL : 249 ||||||:!:|||!.!|||.!..!!:!!|||||||||! !!:!||||||!!!||| rGlnPheLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnT 3174981 : GCAATTTCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGA : 3175037 250 : euGluPheGlyAlaLysPheGlyGluAlaAlaAlaPheMetPheCysValLeuAla : 267 !:!! ! !:!!:!! !! !! ! ! ! !!|||||| !! !!|||!!!||| hrLysValTyrSerGlnValLeuAlaLeuIleProPheMetValSerValPheAla 3175038 : CCAAGGTGTATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCA : 3175091 268 : GlnIlePheTyrTyrCysTrpTyrGlyAsnGluValLysLeuLys{Se} >>>> : 283 ||||||||||||! !||||||||||||||||||..!|||:!!|||{ } GlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys{Va}-- 3175092 : CAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG{GT}ac..... : 3175143 284 : Target Intron 1 >>>> {r}LeuThrIleValAspValAlaLeuAspSerT : 294 74 bp {!}||| !||| !|||..!!.!!!!!!:|||! ++{l}LeuGluIleCysAspThrValPheGluSerA 3175144 : ....................ag{C}CTTGAAATTTGCGACACAGTATTCGAAAGCA : 3175246 295 : hrLeuMetSerLeuAspAsnSerThrLysLysMetPheLeuThrIleThrMetArg : 312 .!! !! !:!!|||..!.!.||||||||||||! .!!|||||||||! !:!:||| snTrpThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArg 3175247 : ACTGGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGC : 3175300 313 : AlaMetGluProIleGlnPheThrSerIleHisIleValSerMetAsnLeuGluSe : 331 :!!:!!:!!||||||:!!||||||.!! ! !:!! !! !!:!:||||||||||| SerLeuLysProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSe 3175301 : TCGTTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTC : 3175357 332 : rPhe : 332 |||| rPhe 3175358 : TTTT : 3175362 vulgar: gi|805795879|ref|XP_012143129.1| 211 332 . KQ414646.1 3174925 3175362 + 224 M 71 213 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174926 3175362 224 + . gene_id 8 ; sequence gi|805795879|ref|XP_012143129.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3174926 3175140 . + . KQ414646.1 exonerate:protein2genome:local exon 3174926 3175140 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3175141 3175142 . + . intron_id 1 ; splice_site "AC" KQ414646.1 exonerate:protein2genome:local intron 3175141 3175214 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3175213 3175214 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3175215 3175362 . + . KQ414646.1 exonerate:protein2genome:local exon 3175215 3175362 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3174926 3175362 224 + . alignment_id 8 ; Query gi|805795879|ref|XP_012143129.1| ; Align 3174926 212 213 ; Align 3175216 284 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795879|ref|XP_012143129.1| PREDICTED: odorant receptor 45a [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 140 -> 214 Target range: 3174326 -> 3174552 141 : SerPhePheThrAspTyrArgHisGlyGlyLeuLysPheArgAlaTrpLeu-ProT : 159 |||.!!||||||! !!:!!:! ! !!! !||| .!!|||!.!||||||#|||! SerIlePheThrAlaPheLysIleArgGluLeuProLeuArgGlyTrpLeu#ProP 3174327 : TCGATCTTCACGGCTTTTAAGATCAGAGAGTTACCCCTTCGAGGATGGTTAACCTT : 3174382 160 : yrAspTyrSerSerProLeu<->LeuPheThrValThrTyrValHisGlnMetVal : 176 :!||||||!!!:!! !!||| :!!|||!:!:!!||||||!.!:!!|||.!.||| heAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGlnPheVal 3174383 : TCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAGTTTGTA : 3174436 177 : ValMetValPheAlaThrAsnPheIleValAlaCysAspSerLeuPheSerGlyLe : 195 ..!:!!:!!||| !|||::! !|||:!!!.!! !|||!:!|||||||||||||| ThrLeuIlePheLeuThrSerAlaIleIleGlySerAspAsnLeuPheSerGlyLe 3174437 : ACTCTGATATTCCTTACTTCTGCTATTATCGGTTCTGACAATCTATTCAGCGGACT : 3174493 196 : uLeuValAsnIleTyrCysGlnPheGluLeuLeuGluTyrArgLeuLysAsnValG : 214 ||||:!!:!!||||||||||||||||||:!!|||:!!:!!|||||||||!:!:!!: uLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysSerIleL 3174494 : GTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGAGCATTA : 3174550 215 : lu : 214 !! ys 3174551 : AA : 3174552 vulgar: gi|805795879|ref|XP_012143129.1| 140 214 . KQ414646.1 3174326 3174552 + 171 M 17 51 F 0 1 M 8 24 G 0 3 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174327 3174552 171 + . gene_id 9 ; sequence gi|805795879|ref|XP_012143129.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174327 3174552 . + . KQ414646.1 exonerate:protein2genome:local exon 3174327 3174552 . + . insertions 3 ; deletions 0 ; frameshifts 1 KQ414646.1 exonerate:protein2genome:local similarity 3174327 3174552 171 + . alignment_id 9 ; Query gi|805795879|ref|XP_012143129.1| ; Align 3174327 141 51 ; Align 3174379 158 24 ; Align 3174406 166 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795879|ref|XP_012143129.1| PREDICTED: odorant receptor 45a [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 214 -> 286 Target range: 3178384 -> 3178603 215 : LysPheAlaThrAlaValAsnGluValPheThrAlaIleIleSerIleGlnPheIl : 233 :::|||.!! !.!!|||||| |||||| ! !!!:|||! !:!:|||||| ArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLeuGlnPheSe 3178385 : agaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCTGCAATTTTC : 3178439 234 : eValAsnThrPheAlaLeuCysPheAsnHisTyrArgLeuSerGlnLeuGlu<->P : 251 !:!!!:!:!! !.!||||||!!.!:! !|||!:!:!!||| !:!!.!. | rIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrIleAsnProP 3178440 : CATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGATTAATCCAT : 3178496 252 : heGlyAlaLysPheGlyGluAlaAlaAlaPheMetPheCysValLeuAlaGlnIle : 269 ||.!! !!!.|||! ! !..!|||:!!!:!:!:! !|||:!!|||.!!|||:!: heSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeuThrGlnVal 3178497 : TTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACGCAGGTG : 3178550 270 : PheTyrTyrCysTrpTyrGlyAsnGluValLysLeuLysSerLeuThrIle : 286 !:!! |||||||||!:!||||||||||||! !|||||| ! !|||:!: TyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLysValGlyThrVal 3178551 : TATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAGGTTGGCACCGTG : 3178603 vulgar: gi|805795879|ref|XP_012143129.1| 214 286 . KQ414646.1 3178384 3178603 + 147 M 36 108 G 0 3 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178385 3178603 147 + . gene_id 10 ; sequence gi|805795879|ref|XP_012143129.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178385 3178603 . + . KQ414646.1 exonerate:protein2genome:local exon 3178385 3178603 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178385 3178603 147 + . alignment_id 10 ; Query gi|805795879|ref|XP_012143129.1| ; Align 3178385 215 108 ; Align 3178496 251 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795339|ref|XP_012142988.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 438 Query range: 1 -> 130 Target range: 3150616 -> 3151146 2 : ValGlnGluLysPheGlnIleIleMetGlyIleGlnLeuAlaSerSerThrLeuVa : 20 :!!||||||||||||::! |||!!:|||:!:|||||| !|||||||||||||| MetGlnGluLysPheArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuVa 3150617 : ATGCAAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGGT : 3150671 21 : lValCysPheIleLeuTyrLysLeuThrAsnThr<->ProMetAsnSerThrTyrL : 38 |||||||||||||||||||:!!|||.!!|||||| |||!!:!:!|||! !|||| lValCysPheIleLeuTyrGluLeuAlaAsnThrProProIleSerSerLysTyrL 3150672 : AGTGTGTTTCATCCTGTACGAATTGGCGAACACGCCTCCAATCAGCTCCAAGTACC : 3150728 39 : euGlnPheValLeuTyrMetAlaCysMetMetSerGlnIleTyrPheTyrCysTrp : 56 |||||||||||||||||:!!||||||||||||!!!||||||!:!|||||||||||| euGlnPheValLeuTyrLeuAlaCysMetMetThrGlnIlePhePheTyrCysTrp 3150729 : TGCAATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATCTTCTTTTACTGCTGG : 3150782 57 : TyrGlyAsnGluLeuLysLeuLys >>>> Target Intron 1 >>>> Ser : 65 ||||||.!.:!!|||||||||||| 61 bp ||| TyrGlyGluGlnLeuLysLeuLys++ ++Ser 3150783 : TACGGCGAGCAGTTGAAACTGAAGgt.........................agAGC : 3150870 66 : ValGluValValAspAlaIleSerGluMetAspTrpMetSerLeuAspAsnLysSe : 84 ||||||:!!||| !.!!|||! !||||||||||||!!: !!|||.!.||| ! ValGluIleValArgThrIlePheGluMetAspTrpIleProLeuGlnAsnGlyIl 3150871 : GTCGAGATTGTGCGCACGATCTTCGAAATGGATTGGATACCTCTCCAGAACGGTAT : 3150927 85 : rGlnLysAspLeuIleHisIleMetArgArgAlaLeuAsnProIleGluLeuSerC : 103 !:!!|||||||||||| !:!: !|||||||||:!!! !||||||||||||!!!| eLysLysAspLeuIleValValAlaArgArgAlaMetIleProIleGluLeuThrC 3150928 : CAAGAAGGATTTGATAGTCGTGGCGAGAAGAGCGATGATCCCGATCGAGTTGACCT : 3150984 104 : ysAlaTyrIleTyrThrMetAspLeuSerThrPheMetSer >>>> Target I : 117 ||||||||!!:!:!||||||||||||!:!||||||:!:||| 79 ysAlaTyrMetPheThrMetAspLeuAsnThrPheValSer++ 3150985 : GCGCGTACATGTTCACCATGGACTTGAACACCTTCGTCAGCgt............. : 3151028 118 : ntron 2 >>>> IleLeuLysMetSerTyrSerValTyrAsnLeuLeuGlnArg : 130 bp :!:||||||||||||||||||..!||||||||||||:!!||| ++LeuLeuLysMetSerTyrSerThrTyrAsnLeuLeuGluArg 3151029 : ............agCTGTTGAAAATGTCCTACTCGACGTACAATCTGCTTGAAAGG : 3151144 vulgar: gi|805795339|ref|XP_012142988.1| 1 130 . KQ414646.1 3150616 3151146 + 438 M 30 90 G 0 3 M 33 99 5 0 2 I 0 57 3 0 2 M 52 156 5 0 2 I 0 75 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150617 3151146 438 + . gene_id 1 ; sequence gi|805795339|ref|XP_012142988.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3150617 3150808 . + . KQ414646.1 exonerate:protein2genome:local exon 3150617 3150808 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150809 3150810 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150809 3150869 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150868 3150869 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150870 3151025 . + . KQ414646.1 exonerate:protein2genome:local exon 3150870 3151025 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3151026 3151027 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3151026 3151104 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3151103 3151104 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3151105 3151146 . + . KQ414646.1 exonerate:protein2genome:local exon 3151105 3151146 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150617 3151146 438 + . alignment_id 1 ; Query gi|805795339|ref|XP_012142988.1| ; Align 3150617 2 90 ; Align 3150710 32 99 ; Align 3150870 65 156 ; Align 3151105 117 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795339|ref|XP_012142988.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 184 Query range: 0 -> 121 Target range: 3153465 -> 3153881 1 : MetValGlnGluLysPheGlnIleIleMetGlyIleGlnLeuAlaSerSerThrLe : 19 !!:|||.!.||||||.!! !! !:!! !.!!||||||!!!|||! !|||||| IleValAsnGluLysLeuGlyAsnValSerSerIleGlnPheAlaIleSerThrGl 3153466 : ATAGTGAACGAGAAGCTTGGAAATGTCTCGAGTATACAGTTCGCGATAAGCACAGG : 3153520 20 : uValValCysPheIleLeuTyrLysLeuThrAsnThrProMetAsnSerThrTyrL : 38 !!.!:!!||||||! !||||||::!:!!:!! ! ! !:!:..! !!! !!:!: yAlaIleCysPheAsnLeuTyrArgMetSerValIleGluLeuGlyProLysPheV 3153521 : AGCGATATGCTTCAATCTCTATCGAATGTCGGTGATAGAACTCGGTCCAAAGTTTG : 3153577 39 : euGlnPheValLeuTyrMetAlaCysMetMetSerGlnIleTyrPheTyrCysTrp : 56 !!:!! :!! ! !! !.!|||:!::!::!!||||||!:!!:!||||||||| alGluAlaLeuThrIleThrValCysLeuLeuAlaGlnIlePheTyrTyrCysTrp 3153578 : TGGAAGCGTTAACTATCACAGTATGCTTACTCGCGCAGATATTTTACTATTGTTGG : 3153631 57 : TyrGlyAsnGluLeuLysLeu{L} >>>> Target Intron 1 >>>> {ys : 64 |||||||||::: ... {:} 53 bp {!! TyrGlyAsnAspArgAsnTyr{G}-+ --{lu 3153632 : TAcggtaacgatagaaattac{g}at.........................gc{AG : 3153709 65 : }SerValGluValValAspAlaIleSerGluMetAspTrpMetSerLeuAspAsnL : 83 }|||:!!|||:!!|||||| !:!!!!!.!.! :!! ! !! !|||.!.! }SerLeuGluIleValAspArgValThrAsnSerAsnIleThrValSerAspGluS 3153710 : }AGTCTCGAAATTGTGGACAGAGTAACGAACAGTAATATAACCGTGTCGGACGAAA : 3153765 84 : ysSerGlnLysAspLeuIleHisIleMetArgArgAlaLeuAsnProIleGluLeu : 101 ..|||:!!||| !|||:!! !!:!!:||||||||||||.!.|||:!!|||!!! erSerLysLysIleLeuValLeuMetIleArgArgAlaLeuGluProValGluPhe 3153766 : GCTCCAAGAAGATTCTGGTATTGATGATACGACGAGCTTTGGAGCCTGTCGAGTTC : 3153819 102 : SerCysAlaTyrIleTyrThrMetAspLeuSerThrPheMetSerIleLeuLysMe : 120 !!! !! ! !||| :!!:!::!!|||..!:!!|||! !|||:!! !! !!! ThrGlyLeuArgIleMetSerValAsnLeuGluSerPheThrSerValSerMetIl 3153820 : ACCGGCCTTCGTATCATGTCTGTTAATCTCGAGTCATTCACGTCGGTTAGTATGAT : 3153876 121 : tSer : 121 :||| eSer 3153877 : ATCG : 3153881 vulgar: gi|805795339|ref|XP_012142988.1| 0 121 . KQ414646.1 3153465 3153881 + 184 M 63 189 S 0 1 5 0 2 I 0 49 3 0 2 S 1 2 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153466 3153881 184 + . gene_id 2 ; sequence gi|805795339|ref|XP_012142988.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3153466 3153655 . + . KQ414646.1 exonerate:protein2genome:local exon 3153466 3153655 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3153656 3153657 . + . intron_id 1 ; splice_site "AT" KQ414646.1 exonerate:protein2genome:local intron 3153656 3153708 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3153707 3153708 . + . intron_id 0 ; splice_site "GC" KQ414646.1 exonerate:protein2genome:local cds 3153709 3153881 . + . KQ414646.1 exonerate:protein2genome:local exon 3153709 3153881 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153466 3153881 184 + . alignment_id 2 ; Query gi|805795339|ref|XP_012142988.1| ; Align 3153466 1 189 ; Align 3153711 65 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795339|ref|XP_012142988.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 0 -> 64 Target range: 3155817 -> 3156012 1 : MetValGlnGluLysPheGlnIleIleMetGlyIleGlnLeuAlaSerSerThrLe : 19 |||:!!.!.|||:!!|||:!!!!: !!: !! !|||!!!||| !|||||||| MetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAlaValSerThrLe 3155818 : ATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGTGAGTACGCT : 3155872 20 : uValValCysPheIleLeuTyrLysLeuThrAsnThrProMetAsnSer<->ThrT : 37 |!.!:!!||||||! !|||||| !||||||...:!! !:!!!.. !! ! !| uAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValThrProIleArgT 3155873 : GGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGACGCCGATTAGGT : 3155929 38 : yrLeuGlnPheValLeuTyrMetAlaCysMetMetSerGlnIleTyrPheTyrCys : 55 ||:!!:!!.!.:!!:!!|||! ::!||||||:!:!!!||||||!:!.!!|||||| yrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyrCys 3155930 : ATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGC : 3155983 56 : TrpTyrGlyAsnGluLeuLysLeuLys : 64 |||||||||||||||:!!||||||||| TrpTyrGlyAsnGluValLysLeuLys 3155984 : TGGTACGGGAACGAAGTTAAGCTGAAG : 3156012 vulgar: gi|805795339|ref|XP_012142988.1| 0 64 . KQ414646.1 3155817 3156012 + 170 M 35 105 G 0 3 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155818 3156012 170 + . gene_id 3 ; sequence gi|805795339|ref|XP_012142988.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155818 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155818 3156012 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155818 3156012 170 + . alignment_id 3 ; Query gi|805795339|ref|XP_012142988.1| ; Align 3155818 1 105 ; Align 3155926 36 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795339|ref|XP_012142988.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 1 -> 64 Target range: 3164995 -> 3165184 2 : ValGlnGluLysPheGlnIleIleMetGlyIleGlnLeuAlaSerSerThrLeuVa : 20 |||.!.|||:!!|||:!!:!:|||:!! ! !|||!!!..!! !|||! !! !|| ValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerVa 3164996 : GTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGT : 3165050 21 : lValCysPheIleLeuTyrLysLeuThrAsnThrProMetAsnSerThrTyrLeuG : 39 |:!!||||||! !||||||::!:!!|||.!.! ! !|||:!:::: ::::::: lIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValG 3165051 : GATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcg : 3165107 40 : lnPheValLeuTyrMetAlaCysMetMetSerGlnIleTyrPheTyrCysTrpTyr : 57 ::...:!!|||||| !|||! !!:!!!||||||!:!!:!|||||||||||| luIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyr 3165108 : aaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTAC : 3165161 58 : GlyAsnGluLeuLysLeuLys : 64 |||||||||:!!|||! !||| GlyAsnGluValLysHisLys 3165162 : GGCAACGAAGTGAAACATAAG : 3165184 vulgar: gi|805795339|ref|XP_012142988.1| 1 64 . KQ414646.1 3164995 3165184 + 167 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164996 3165184 167 + . gene_id 4 ; sequence gi|805795339|ref|XP_012142988.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164996 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164996 3165184 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164996 3165184 167 + . alignment_id 4 ; Query gi|805795339|ref|XP_012142988.1| ; Align 3164996 2 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795339|ref|XP_012142988.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 1 -> 64 Target range: 3158467 -> 3158656 2 : ValGlnGluLysPheGlnIleIleMetGlyIleGlnLeuAlaSerSerThrLeuVa : 20 |||.!.|||:!!|||:!!:!:|||:!! ! !|||!!!..!! !|||! !! !|| ValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerVa 3158468 : GTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGT : 3158522 21 : lValCysPheIleLeuTyrLysLeuThrAsnThrProMetAsnSerThrTyrLeuG : 39 |:!!||||||! !||||||::!:!!|||.!.! ! !|||:!:::: ::::::: lIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValG 3158523 : GATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcg : 3158579 40 : lnPheValLeuTyrMetAlaCysMetMetSerGlnIleTyrPheTyrCysTrpTyr : 57 ::...:!!|||||| !|||! !!:!!!||||||!:!!:!|||||||||||| luIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyr 3158580 : aaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGTTGGTAC : 3158633 58 : GlyAsnGluLeuLysLeuLys : 64 |||||||||:!!||| !||| GlyAsnGluValLysAspLys 3158634 : GGCAACGAAGTGAAAGATAAG : 3158656 vulgar: gi|805795339|ref|XP_012142988.1| 1 64 . KQ414646.1 3158467 3158656 + 166 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158468 3158656 166 + . gene_id 5 ; sequence gi|805795339|ref|XP_012142988.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158468 3158656 . + . KQ414646.1 exonerate:protein2genome:local exon 3158468 3158656 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3158468 3158656 166 + . alignment_id 5 ; Query gi|805795339|ref|XP_012142988.1| ; Align 3158468 2 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795339|ref|XP_012142988.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 0 -> 70 Target range: 3160735 -> 3160945 1 : MetValGlnGluLysPheGlnIleIleMetGlyIleGlnLeuAlaSerSerThrLe : 19 !!::!!.!.! !||||||...|||! |||!.!! |||!!! ! !!!!|||:! IleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValThrThrMe 3160736 : ATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTAT : 3160790 20 : uValValCysPheIleLeuTyrLysLeuThrAsnThrProMetAsnSerThrTyrL : 38 !..!:!!||||||! !|||!:!::!||||||.!.||| !:!! !!||| ! !| tThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysValTyrSerGlnValL 3160791 : GACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGGTGTATTCGCAAGTTT : 3160847 39 : euGlnPheValLeuTyrMetAlaCysMetMetSerGlnIleTyrPheTyrCysTrp : 56 || !!!.:!!! !!:!|||!.! !!:!!.!.:!!||||||!:!!:!! !|||||| euAlaLeuIleProPheMetValSerValPheAlaGlnIlePheTyrCysCysTrp 3160848 : TAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGG : 3160901 57 : TyrGlyAsnGluLeuLysLeuLysSerValGluValValAsp : 70 |||||||||||| !|||:!!||| ! !!!: !..!||| TyrGlyAsnGluThrLysValLysValArgAspGlnThrAsp 3160902 : TATGGAAACGAGACCAAAGTGAAGGTACGTGATCAAACAGAC : 3160945 vulgar: gi|805795339|ref|XP_012142988.1| 0 70 . KQ414646.1 3160735 3160945 + 147 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160736 3160945 147 + . gene_id 6 ; sequence gi|805795339|ref|XP_012142988.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160736 3160945 . + . KQ414646.1 exonerate:protein2genome:local exon 3160736 3160945 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160736 3160945 147 + . alignment_id 6 ; Query gi|805795339|ref|XP_012142988.1| ; Align 3160736 1 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795339|ref|XP_012142988.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 0 -> 70 Target range: 3174946 -> 3175156 1 : MetValGlnGluLysPheGlnIleIleMetGlyIleGlnLeuAlaSerSerThrLe : 19 !!::!!.!.! !||||||...|||! |||!.!! |||!!! ! !!!!|||:! IleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValThrThrMe 3174947 : ATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTAT : 3175001 20 : uValValCysPheIleLeuTyrLysLeuThrAsnThrProMetAsnSerThrTyrL : 38 !..!:!!||||||! !|||!:!::!||||||.!.||| !:!! !!||| ! !| tThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysValTyrSerGlnValL 3175002 : GACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGGTGTATTCGCAAGTTT : 3175058 39 : euGlnPheValLeuTyrMetAlaCysMetMetSerGlnIleTyrPheTyrCysTrp : 56 || !!!.:!!! !!:!|||!.! !!:!!.!.:!!||||||!:!!:!! !|||||| euAlaLeuIleProPheMetValSerValPheAlaGlnIlePheTyrCysCysTrp 3175059 : TAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGG : 3175112 57 : TyrGlyAsnGluLeuLysLeuLysSerValGluValValAsp : 70 |||||||||||| !|||:!!||| ! !!!: !..!||| TyrGlyAsnGluThrLysValLysValArgAspGlnThrAsp 3175113 : TATGGAAACGAGACCAAAGTGAAGGTACGTGATCAAACAGAC : 3175156 vulgar: gi|805795339|ref|XP_012142988.1| 0 70 . KQ414646.1 3174946 3175156 + 147 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174947 3175156 147 + . gene_id 7 ; sequence gi|805795339|ref|XP_012142988.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174947 3175156 . + . KQ414646.1 exonerate:protein2genome:local exon 3174947 3175156 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3174947 3175156 147 + . alignment_id 7 ; Query gi|805795339|ref|XP_012142988.1| ; Align 3174947 1 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795339|ref|XP_012142988.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 1 -> 64 Target range: 3178399 -> 3178591 2 : ValGlnGluLysPheGlnIleIleMetGlyIleGlnLeuAlaSerSerThrLeuVa : 20 |||.!. !|||||| !!!:!!: !:!:|||!!!:!!! !|||:!! !|| ValAsnThrValPheGlnTyrMetIlePheLeuGlnPheSerIleSerSerThrVa 3178400 : GTGAACACTGTGTTCCAGTACATGATTTTCCTGCAATTTTCCATCAGTTCGACGGT : 3178454 21 : lValCysPheIleLeuTyrLysLeu<->ThrAsnThrProMetAsnSerThrTyrL : 38 |:!!|||!!.! !:!!||||||:!! |||! !!.!|||.!.!:!! !!.!!:!: lLeuCysLeuSerIleTyrLysMetSerThrIleAsnProPheSerMetAsnPheV 3178455 : GCTGTGTTTGAGCATCTATAAAATGTCGACGATTAATCCATTTAGCATGAACTTCG : 3178511 39 : euGlnPheValLeuTyrMetAlaCysMetMetSerGlnIleTyrPheTyrCysTrp : 56 !! !! !!.!! !|||:!:..!||||||:!:!!!|||:!:|||!!.||||||||| alTrpCysAlaSerTyrLeuCysCysMetLeuThrGlnValTyrLeuTyrCysTrp 3178512 : TCTGGTGCGCCTCCTATTTATGCTGTATGCTCACGCAGGTGTATTTATACTGTTGG : 3178565 57 : TyrGlyAsnGluLeuLysLeuLys : 64 !:!|||||||||:!!! !|||||| PheGlyAsnGluValThrLeuLys 3178566 : TTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: gi|805795339|ref|XP_012142988.1| 1 64 . KQ414646.1 3178399 3178591 + 134 M 27 81 G 0 3 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178400 3178591 134 + . gene_id 8 ; sequence gi|805795339|ref|XP_012142988.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178400 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178400 3178591 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178400 3178591 134 + . alignment_id 8 ; Query gi|805795339|ref|XP_012142988.1| ; Align 3178400 2 81 ; Align 3178484 29 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795339|ref|XP_012142988.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 0 -> 64 Target range: 3180472 -> 3180667 1 : MetValGlnGluLysPheGlnIleIleMetGlyIleGlnLeuAlaSerSerThrLe : 19 !!::!!.!.!!:!...!.|||:!:! ||| ! !|||!!! !.!!||| !:! IleMetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePheGlySerPheMe 3180473 : ATAATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTTCGGAAGCTTTAT : 3180527 20 : uValValCysPheIleLeuTyrLysLeuThrAsnThrProMetAsnSerThr<->T : 37 !|||:!!|||.!.! !||| !:!!||| !|||.!! !!!: !|||||| ! tValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleLeuSerThrGluP 3180528 : GGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTCTCAGCACCGAAT : 3180584 38 : yrLeuGlnPheValLeuTyrMetAlaCysMetMetSerGlnIleTyrPheTyrCys : 55 :!||| ! :::...|||:::::: ::::!! !|||! !!:!.!!|||||| heLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPheLeuTyrCys 3180585 : TCTTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGCTTTCTTTACTGT : 3180638 56 : TrpTyrGlyAsnGluLeuLysLeuLys : 64 |||||||||||||||:!!!:! !||| TrpTyrGlyAsnGluValArgThrLys 3180639 : TGGTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: gi|805795339|ref|XP_012142988.1| 0 64 . KQ414646.1 3180472 3180667 + 114 M 36 108 G 0 3 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180473 3180667 114 + . gene_id 9 ; sequence gi|805795339|ref|XP_012142988.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180473 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180473 3180667 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180473 3180667 114 + . alignment_id 9 ; Query gi|805795339|ref|XP_012142988.1| ; Align 3180473 1 108 ; Align 3180584 37 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795867|ref|XP_012143125.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 526 Query range: 125 -> 369 Target range: 3157803 -> 3159014 126 : AlaTyrThrAlaLeuLeuGlyPhePheAlaPheLeuValLeuPheMetThrIleVa : 144 !.!||| !:::|||||| ... ..!|||!!!:!!! ! ! ! :!!:!!:! GlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrValArgSerLeuLe 3157804 : GGCTACTGGAGtttactattaatttctacGTTCTTTATATACGTGAGATCGCTTTT : 3157858 145 : lIleGlyPheAsnLysArgLysLeuValPheArgMetTrpLeuProTyrAsnTyrS : 163 !|||! !|||!:!!!.|||||||||:!!|||||| |||:!!||||||:!!|||| uIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrAspTyrS 3157859 : GATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACGATTACT : 3157915 164 : erSerAlaArgLeuTyrIleLeuThrSerValTyrGluValMetValThrSerTyr : 181 || !!|||! !:!!!:!|||||||||||||||:!!:!!!.!!!:!.!:!!!!! erProAlaProIlePheIleLeuThrSerValHisGlnAlaIleAlaSerThrIle 3157916 : CCCCTGCGCCCATTTTTATCCTTACCTCCGTCCATCAAGCTATAGCCTCGACGATA : 3157969 182 : GlyValSerValSerIleAlaCysGluCysLeuTyrThrGlyLeuIleLeuHisVa : 200 !! !!!! !!!!:!!.!! !!: !|||||||||||||||:!::!!:!!:! CysCysThrSerThrValThrValAspThrLeuTyrThrGlyLeuLeuIleAsnIl 3157970 : TGTTGCACTTCGACCGTCACTGTGGATACTCTATACACTGGCTTGTTGATTAATAT : 3158026 201 : lCysCysGlnPheGluIleLeuGluHisArgPheLysMetLeuAsnThrAsnProV : 219 !! !|||||||||||||||||||||||||||.!.!:!! :!!!!.|||.!.! !! eTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysThrGluGlnA 3158027 : CTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAACTGAGCAGG : 3158083 220 : alTyrThrValAsnGlnCysAlaSerHisHisHisLeuIleTyr{Ly} >>>> T : 234 ! !!:!!|||!!.|||||||||..!|||||| !!! !||||||{:!} spAspSerValLysGlnCysAlaGlnHisHisAspArgIleTyr{Gl}++ 3158084 : ATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTATATAC{CA}gt...... : 3158132 235 : arget Intron 1 >>>> {s}TyrAlaGluAlaValAsnGluGluPheLysGl : 245 325 bp {!}!:!:!!:!! !|||||||||||||||||| ++{n}PheSerLysLysValAsnGluGluPheLysLe 3158133 : ...................ag{A}TTTTCGAAAAAGGTGAACGAAGAATTCAAACT : 3158486 246 : yIleValSerPheGlnPhePheSerSerMetSerMetIleCysLeuThrIleTyrG : 264 !|||:!!! !! !||||||! !! !|||||||||:!!||||||!!!!.!:!!|||! uIleLeuIleSerGlnPheCysIleSerMetSerValIleCysPheAsnLeuTyrA 3158487 : GATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTTCAATCTTTACC : 3158543 265 : lnLeuProTyrAlaGluAsnSerAlaThrPheLeuAlaThrAlaMetPheLeuMet : 282 :!:!! !! ! !:!!! ...... |||::: !:!:!:!! !.!. rgMetThrGlnIleLysMetAspThrLysPheValGluIleIleLeuTyrSerPhe 3158544 : GAATGACACAGATCAAAATGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTC : 3158597 283 : CysValPheLeuGlnIlePheTyrTyrCysLeuCysGlyAsnValValLysAlaLy : 301 |||..!.!! !||||||||||||||||||! !! !||||||! !||||||! !|| CysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGluValLysAspLy 3158598 : TGCACTATCACGCAGATATTTTACTATTGTTGGTACGGCAACGAAGTGAAAGATAA : 3158654 302 : s >>>> Target Intron 2 >>>> SerAlaGluPheProAspGluIlePh : 310 | 80 bp ||| !:!!.!!||| !! !||||| s++ ++SerLeuGlnLeuProTyrMetIlePh 3158655 : Ggt.........................agAGCCTCCAACTTCCATACATGATATT : 3158761 311 : eSerSerGlyTrpProSerTrpAsnAspSerSerLysLysValLeuLeuMetValI : 329 | !|||! !||| !!|||! !|||:!!!:! !! !:!!.!||||||!!::!!! eHisSerAspTrpThrSerLeuAsnAsnAsnValThrArgAlaLeuLeuIleMetM 3158762 : TCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGAGCACTTTTAATCATGA : 3158818 330 : leArgArgSerLysThrProIleGluPheThrSerMetHisIleValThrLeuSer : 347 !:||||||:!! !! !||||||||||||||||||!!:|||:!!|||:!!:!!!:! etArgArgAlaValArgProIleGluPheThrSerIleHisValValSerValAsn 3158819 : TGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCACGTTGTCTCTGTGAAT : 3158872 348 : LeuGluSerPheMetSer >>>> Target Intron 3 >>>> LeuLeuLys : 356 |||||||||||||||:!! 74 bp :!!:!!||| LeuGluSerPheMetAla++ ++ValIleLys 3158873 : CTCGAATCCTTCATGGCAgt.........................agGTAATAAAA : 3158973 357 : ThrSerTyrSerAlaPheAsnLeuMetSerThrThrArg : 369 |||:!!|||||||||||||||:!!!!:..! !!:!!:! ThrAlaTyrSerAlaPheAsnMetIleGlnGlnSerLys 3158974 : ACTGCGTACTCCGCGTTCAACATGATCCAACAAAGCAAA : 3159014 vulgar: gi|805795867|ref|XP_012143125.1| 125 369 . KQ414646.1 3157803 3159014 + 526 M 108 324 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 67 201 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157804 3159014 526 + . gene_id 1 ; sequence gi|805795867|ref|XP_012143125.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3157804 3158129 . + . KQ414646.1 exonerate:protein2genome:local exon 3157804 3158129 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158130 3158131 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158130 3158454 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3158453 3158454 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158455 3158656 . + . KQ414646.1 exonerate:protein2genome:local exon 3158455 3158656 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158657 3158658 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158657 3158736 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3158735 3158736 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158737 3158892 . + . KQ414646.1 exonerate:protein2genome:local exon 3158737 3158892 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158893 3158894 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158893 3158966 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3158965 3158966 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158967 3159014 . + . KQ414646.1 exonerate:protein2genome:local exon 3158967 3159014 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157804 3159014 526 + . alignment_id 1 ; Query gi|805795867|ref|XP_012143125.1| ; Align 3157804 126 324 ; Align 3158456 235 201 ; Align 3158737 302 156 ; Align 3158967 354 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795867|ref|XP_012143125.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 342 Query range: 0 -> 235 Target range: 3159620 -> 3160401 1 : MetGluThrLeuArgTrpThrArgValMetLeuSerLeuSerGlyCysCysLeuGl : 19 |||.!.||||||!:!! !:!! ! !! |||!!!:!!!!!|||! ! ! MetHisThrLeuGlnLeuSerLeuLysThrLeuThrIleCysGlyTyrIleArgPr 3159621 : ATGCACACGTTGCAATTGTCGTTGAAAACTTTGACGATTTGCGGCTACATAAGGCC : 3159675 20 : uPheTyrIleTyrThrProLeuGlnArgPheLeuTyrGlnIleTyrThrIleValA : 38 ! ! ! :!!||| !! !!:!.!!||||||.!.:!!:!!|||:!!..!! oThrSerTrpLysSerProGlyLeuLysLeuLeuTyrAsnValHisThrValThrV 3159676 : AACATCGTGGAAGTCACCGGGGCTAAAGCTTCTCTATAACGTACACACGGTTACTG : 3159732 39 : laLysMetLeuLeuTyrSerLeuLeuIleLeuGlnThrLeuAspIleValLeuIle : 56 .! !:!::!!||| !!!!!!!!!!:!! !|||! !|||||||||:::... alValValValLeuSerThrPhePheValAlaGlnIleLeuAspIleIlePheAsn 3159733 : TAGTGGTAGTTCTTAGCACGTTTTTCGTCGCCCAGATATTggacattattttcaac : 3159786 57 : ValGluAsnArgAspGluPheThrGluAsnIleAlaIleThrSerMetAlaPheAs : 75 |||||||||!:!|||||||||!:!!!:|||.!!..!||||||!!! !.!.!.|| ValGluAsnGlnAspGluPheSerAspAsnPheCysIleThrCysCysValMetAs 3159787 : gtgGAGAATCAAGACGAGTTTAGCGACAATTTCTGCATAACGTGCTGCGTGATGAA : 3159843 76 : nAlaLeuMetLysAsnThrMetMetSerThrHisArgAlaAsnIleLeuThrLeuI : 94 |::!||| ||| !! :!! !! ! |||! !! |||! !!.!|||| nSerLeuGlyLysLeuTyrSerLeuLeuIleGlyArgGluMetIleGlnAsnLeuI 3159844 : CAGCCTTGGAAAGTTGTACAGCTTGCTGATAGGACGAGAAATGATCCAAAATTTAA : 3159900 95 : leLysArgLeuGluArgAsnTyrPheLeuProIleThrLysGlnGluMetGluIle : 112 || ! !|||:!!!!!:!! !.!! !|||:!: !:!! !|||! |||||| leAspSerLeuGlnSerAspProLeuArgProLeuAspGluValGluAsnGluIle 3159901 : TAGACTCGCTACAAAGTGACCCTCTTAGGCCGTTGGACGAAGTGGAGAATGAAATT : 3159954 113 : ArgSerArgPheAspArgIleIle{Gl} >>>> Target Intron 1 >>>> : 121 |||! !||| !!!:!:!! !|||{||} 73 bp ArgLeuArgHisGluLysThrIle{Gl}++ + 3159955 : CGATTGAGACACGAGAAGACAATC{GA}gt.........................a : 3160054 122 : {u}SerThrSerLysAlaTyrThrAlaLeuLeuGlyPhePheAlaPheLeuValL : 139 {|}!.! !|||! !|||||||||!.!! ! !! !.!. !||| ! !|||! +{u}LysLeuSerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValT 3160055 : g{A}AAGCTCTCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTAT : 3160108 140 : euPheMetThrIleValIleGlyPheAsnLysArgLysLeuValPheArgMetTrp : 157 !.!.:!!:!! !:!!! !.!|||!..! |||:!!||| !.!!|||:!:||| rpMetLeuSerAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrp 3160109 : GGATGTTGTCGGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGG : 3160162 158 : LeuProTyrAsnTyr<->SerSerAlaArgLeuTyrIleLeuThrSerValTyrGl : 175 ||||||!:!:!!||| :!!!!! ! !!:!!!:!! !||||||! !!.!|||:! LeuProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGl 3160163 : TTACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCA : 3160219 176 : uValMetValThrSerTyrGlyValSerValSerIleAlaCysGluCysLeuTyrT : 194 ! !!:!:..! !! !!:! !..!!!!!.!! !!!:!.! !!!: !|||!:!! nPheValThrLeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheS 3160220 : GTTTGTAACTCTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCA : 3160276 195 : hrGlyLeuIleLeuHisValCysCysGlnPheGluIleLeuGluHisArgPheLys : 212 :!||||||:!::!!|||:!!! !||||||||||||||||||:!!||||||.!.||| erGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLys 3160277 : GCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAG : 3160330 213 : MetLeuAsnThrAsnProValTyrThrValAsnGlnCysAlaSerHisHisHisLe : 231 ! :!!!!. !!:!! !! !|||:!!!.!!!.|||||||||! !||||||:!!! SerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrAr 3160331 : AGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCG : 3160387 232 : uIleTyrLysTyr : 235 !|||||||||!:! gIleTyrLysPhe 3160388 : CATATACAAGTTT : 3160401 vulgar: gi|805795867|ref|XP_012143125.1| 0 235 . KQ414646.1 3159620 3160401 + 342 M 120 360 S 0 2 5 0 2 I 0 69 3 0 2 S 1 1 M 41 123 G 0 3 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3159621 3160401 342 + . gene_id 2 ; sequence gi|805795867|ref|XP_012143125.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3159621 3159982 . + . KQ414646.1 exonerate:protein2genome:local exon 3159621 3159982 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3159983 3159984 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3159983 3160055 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3160054 3160055 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3160056 3160401 . + . KQ414646.1 exonerate:protein2genome:local exon 3160056 3160401 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3159621 3160401 342 + . alignment_id 2 ; Query gi|805795867|ref|XP_012143125.1| ; Align 3159621 1 360 ; Align 3160057 122 123 ; Align 3160183 163 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795867|ref|XP_012143125.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 325 Query range: 122 -> 369 Target range: 3153117 -> 3154098 123 : ThrSerLysAlaTyrThrAlaLeuLeuGlyPhePheAlaPheLeuValLeuPheMe : 141 !.!:!!|||||||||||| !!!!|||! !.!!!!.!.! !!:!!:!!! !.!.! AsnAlaLysAlaTyrThrTyrPheLeuAspIleLeuValValValLeuTrpIleTh 3153118 : AACGCTAAGGCTTACACATATTTCCTGGACATCTTGGTAGTCGTTTTATGGATAAC : 3153172 142 : tThrIleValIleGlyPheAsnLysArgLysLeuValPheArgMetTrpLeuProT : 160 :!! ! !!! ! !!:!!..:::||||||... ||||||:::|||||||||| rSerTyrPheThrAspTyrArgArgArgLysPheLysPheArgValTrpLeuProT 3153173 : ATCGTACTTCACGGACTACAGGcgcagaaaattcaaatttcgcgtCTGGTTACCTT : 3153229 161 : yrAsnTyrSerSerAlaArgLeuTyrIleLeuThrSerValTyrGluValMetVal : 178 ||:!! !!!!!!! !! !:!!!:!! !|||! !! ! ! ! :!!:!!:!: ! yrAspThrThrThrGlnProValPheThrLeuIleTyrCysGlnGlnIleValCys 3153230 : ACGACACTACTACACAACCTGTCTTCACTCTGATCTACTGTCAACAGATCGTCTGC : 3153283 179 : ThrSerTyrGlyValSerValSerIleAlaCysGluCysLeuTyrThrGlyLeuIl : 197 |||!!!|||.!!|||!:!:!!!:!:!! !|||!!:||||||!:!!:!||||||!! ThrTrpTyrSerValAsnIleAsnValIleCysAspCysLeuPheSerGlyLeuMe 3153284 : ACGTGGTACAGCGTGAATATTAACGTCATTTGCGACTGCCTGTTCAGCGGCCTGAT : 3153340 198 : eLeuHisValCysCysGlnPheGluIleLeuGlu<->HisArgPheLysMetLeuA : 215 ::!!!!.:!!|||! !!...!! :!!:!! !||| !!. :!! tIleGlnIleCysSerIleLeuArgLysMetLysProThrArgArgAsnCysValL 3153341 : GATACAGATTTGCTCAATCTTACGGAAGATGAAACCTACTCGGCGAAACTGTGTGC : 3153397 216 : snThrAsnProValTyrThrValAsnGlnCysAlaSerHisHisHisLeuIleTyr : 233 !..!!.! !:!! !..!!:!|||! ! ...... ! euValThrIleIleArgTyrThrSerGlnSerArgGlnGluIleLysArgTyrVal 3153398 : TCGTCACCATAATCAGATATACAAGCCAGTCTCGacaagaaattaaacgatacgTT : 3153451 234 : LysTyrAlaGluAlaValAsnGluGluPheLysGlyIleValSerPheGlnPhePh : 252 !! |||:!! !|||||||||:!!.!! !..!:!! !|||.!.|||||| ***LeuAlaGlnIleValAsnGluLysLeuGlyAsnValSerSerIleGlnPheAl 3153452 : TGATTGGCGCAAATAGTGAACGAGAAGCTTGGAAATGTCTCGAGTATACAGTTCGC : 3153508 253 : eSerSerMetSerMetIleCysLeuThrIleTyrGlnLeuProTyrAlaGluAsnS : 271 ! !|||! .!! !||||||!!!!.!:!!|||!:!:!! !! !||| !. aIleSerThrGlyAlaIleCysPheAsnLeuTyrArgMetSerValIleGluLeuG 3153509 : GATAAGCACAGGAGCGATATGCTTCAATCTCTATCGAATGTCGGTGATAGAACTCG : 3153565 272 : erAlaThrPheLeuAlaThrAlaMetPheLeuMetCysValPheLeuGlnIlePhe : 289 !! !!! !|||:!!! !.!! !! .!! !:!:|||:!!.!! !||||||||| lyProLysPheValGluAlaLeuThrIleThrValCysLeuLeuAlaGlnIlePhe 3153566 : GTCCAAAGTTTGTGGAAGCGTTAACTATCACAGTATGCTTACTCGCGCAGATATTT : 3153619 290 : TyrTyrCysLeuCysGlyAsnValValLysAla{L} >>>> Target Intron : 301 |||||||||! !! |||||| ... {:} 53 bp TyrTyrCysTrpTyrGlyAsnAspArgAsnTyr{G}-+ 3153620 : TACTATTGTTGGTAcggtaacgatagaaattac{g}at.................. : 3153658 302 : 1 >>>> {ys}SerAlaGluPheProAspGluIlePheSerSerGlyTrpProS : 316 {!!}||| !|||.!! !|||..!:!! !:!|||..! !! --{lu}SerLeuGluIleValAspArgValThrAsnSerAsnIleThrV 3153659 : .......gc{AG}AGTCTCGAAATTGTGGACAGAGTAACGAACAGTAATATAACCG : 3153753 317 : erTrpAsnAspSerSerLysLysValLeuLeuMetValIleArgArgSerLysThr : 334 !! !:!!!!:||||||||||||:!!|||:!!:!!:!!|||||||||:!! ! ! alSerAspGluSerSerLysLysIleLeuValLeuMetIleArgArgAlaLeuGlu 3153754 : TGTCGGACGAAAGCTCCAAGAAGATTCTGGTATTGATGATACGACGAGCTTTGGAG : 3153807 335 : ProIleGluPheThrSerMetHisIleValThrLeuSerLeuGluSerPheMetSe : 353 |||:!!|||||||||.!!:!:!.!|||:!!:!!:!!!:!||||||||||||! !|| ProValGluPheThrGlyLeuArgIleMetSerValAsnLeuGluSerPheThrSe 3153808 : CCTGTCGAGTTCACCGGCCTTCGTATCATGTCTGTTAATCTCGAGTCATTCACGTC : 3153864 354 : r >>>> Target Intron 2 >>>> LeuLeuLysThrSerTyrSerAlaPh : 362 | 184 bp |||||||||:!!||||||:!!||||| r++ ++LeuLeuLysSerSerTyrAlaAlaPh 3153865 : Ggt.........................agCTGTTGAAATCCTCCTACGCGGCTTT : 3154075 363 : eAsnLeuMetSerThrThrArg : 369 ||||:!!:!:... ||| eAsnMetLeuGlnGluArgArg 3154076 : CAATATGCTCCaggaaagaagg : 3154098 vulgar: gi|805795867|ref|XP_012143125.1| 122 369 . KQ414646.1 3153117 3154098 + 325 M 86 258 G 0 3 M 92 276 S 0 1 5 0 2 I 0 49 3 0 2 S 1 2 M 52 156 5 0 2 I 0 180 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153118 3154098 325 + . gene_id 3 ; sequence gi|805795867|ref|XP_012143125.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3153118 3153655 . + . KQ414646.1 exonerate:protein2genome:local exon 3153118 3153655 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3153656 3153657 . + . intron_id 1 ; splice_site "AT" KQ414646.1 exonerate:protein2genome:local intron 3153656 3153708 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3153707 3153708 . + . intron_id 0 ; splice_site "GC" KQ414646.1 exonerate:protein2genome:local cds 3153709 3153866 . + . KQ414646.1 exonerate:protein2genome:local exon 3153709 3153866 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3153867 3153868 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3153867 3154050 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3154049 3154050 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3154051 3154098 . + . KQ414646.1 exonerate:protein2genome:local exon 3154051 3154098 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153118 3154098 325 + . alignment_id 3 ; Query gi|805795867|ref|XP_012143125.1| ; Align 3153118 123 258 ; Align 3153379 209 276 ; Align 3153711 302 156 ; Align 3154051 354 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795867|ref|XP_012143125.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 290 Query range: 233 -> 369 Target range: 3164980 -> 3165542 234 : LysTyrAlaGluAlaValAsnGluGluPheLysGlyIleValSerPheGlnPhePh : 252 !:!!:!:!!:!! !|||||||||||||||||| !|||:!!! !! !||||||! ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3164981 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3165035 253 : eSerSerMetSerMetIleCysLeuThrIleTyrGlnLeuProTyrAlaGluAsnS : 271 !! !|||||||||:!!||||||!!!!.!:!!|||!:!:!! !! ! !:!!! . sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetA 3165036 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGG : 3165092 272 : erAlaThrPheLeuAlaThrAlaMetPheLeuMetCysValPheLeuGlnIlePhe : 289 ..... |||::: !:!:!:!! !.!.|||..!.!! !||||||||| spThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePhe 3165093 : AcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTT : 3165146 290 : TyrTyrCysLeuCysGlyAsnValValLysAlaLys >>>> Target Intron : 302 |||||||||! !! !||||||! !|||||| !||| 80 bp TyrTyrCysTrpTyrGlyAsnGluValLysHisLys++ 3165147 : TACTATTGCTGGTACGGCAACGAAGTGAAACATAAGgt.................. : 3165187 303 : 1 >>>> SerAlaGluPheProAspGluIlePheSerSerGlyTrpProSerTr : 317 ||| !:!!.!!||| !! !|||||| !|||! !||| !!|||! ++SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSerLe 3165188 : .......agAGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTT : 3165310 318 : pAsnAspSerSerLysLysValLeuLeuMetValIleArgArgSerLysThrProI : 336 !|||:!!!:! !! !:!!.!||||||!!::!!!!:||||||:!! !! !|||| uAsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgProI 3165311 : GAACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAA : 3165367 337 : leGluPheThrSerMetHisIleValThrLeuSerLeuGluSerPheMetSer > : 354 ||||||||||||||!!:|||:!!|||:!!:!!!:!|||||||||||||||:!! leGluPheThrSerIleHisValValSerValAsnLeuGluSerPheMetAla++ 3165368 : TAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt. : 3165423 355 : >>> Target Intron 2 >>>> LeuLeuLysThrSerTyrSerAlaPheAsn : 363 74 bp :!!:!!|||||||||||||||||||||||| ++ValIleLysThrSerTyrSerAlaPheAsn 3165424 : ........................agGTAATAAAAACTTCGTACTCCGCGTTCAAC : 3165522 364 : LeuMetSerThrThrArg : 369 :!!!!:..! !!:!!:! MetIleGlnGlnSerLys 3165523 : ATGATCCAACAAAGCAAA : 3165542 vulgar: gi|805795867|ref|XP_012143125.1| 233 369 . KQ414646.1 3164980 3165542 + 290 M 68 204 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164981 3165542 290 + . gene_id 4 ; sequence gi|805795867|ref|XP_012143125.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3164981 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164981 3165184 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165185 3165186 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165185 3165264 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3165263 3165264 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165265 3165420 . + . KQ414646.1 exonerate:protein2genome:local exon 3165265 3165420 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165421 3165422 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165421 3165494 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3165493 3165494 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165495 3165542 . + . KQ414646.1 exonerate:protein2genome:local exon 3165495 3165542 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164981 3165542 290 + . alignment_id 4 ; Query gi|805795867|ref|XP_012143125.1| ; Align 3164981 234 204 ; Align 3165265 302 156 ; Align 3165495 354 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795867|ref|XP_012143125.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 252 Query range: 118 -> 301 Target range: 3150026 -> 3150808 119 : IleIleGluSerThrSerLysAlaTyrThrAlaLeuLeuGlyPhePheAlaPheLe : 137 :!! !..!|||..!!!!! !|||||| !|||:!!! !.!! !.!.!!! LeuTyrArgSerValThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCy 3150027 : CTTTACAGGTCGGTGACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTG : 3150081 138 : uValLeuPheMetThrIleValIleGlyPheAsnLysArgLysLeuValPheArgM : 156 !:!!:!!.!! :!!:!::!! !! !||||||:!!|||:!!|||!.!!:!||| sMetIleLeuSerSerLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgA 3150082 : TATGATCCTCTCTTCGTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAG : 3150138 157 : etTrpLeuProTyrAsnTyrSerSerAlaArgLeuTyrIleLeuThrSerValTyr : 174 |||||||||!:!:!!|||||| ! !!! !! !||| !:!!.!!! !|||:!! laTrpLeuProPheAspTyrSerLeuProThrTyrTyrTyrIleAlaTyrValHis 3150139 : CCTGGCTGCCCTTCGATTACTCTCTGCCAACTTACTATTACATCGCGTACGTTCAT : 3150192 175 : GluValMetValThrSerTyrGlyValSerValSerIleAlaCysGluCysLeuTy : 193 :!!:!!:!:!.! !! ! ! ! ! ! !!:!:!!||||||!!: :!! GlnIleValAlaLeuIleGlyThrSerLeuSerAsnValAlaCysAspValIleIl 3150193 : CAGATCGTCGCGCTGATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCAT : 3150249 194 : rThrGlyLeuIleLeuHisValCysCysGlnPheGluIleLeuGluHisArgPheL : 212 ! !||||||:!!:!!|||!.!||| !!||| |||||||||:!!||||||.!.| eCysGlyLeuLeuValHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMetL 3150250 : CTGCGGGTTGCTCGTTCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATGA : 3150306 213 : ysMetLeuAsnThrAsnProValTyrThrValAsnGlnCysAlaSerHisHisHis : 230 || !:!!!.. !.!.! ! ! !.!:!!...:!! !!.! !! !||| !! ysGluMetThrGlnGluGlnArgProAsnIleGlyLysIleValArgPheHisAsp 3150307 : AGGAGATGACGCAGGAACAGAGGCCGAATATCGGGAAAATCGTTCGTTTCCACGAT : 3150360 231 : LeuIleTyr{Ly} >>>> Target Intron 1 >>>> {s}TyrAlaGluAl : 238 ! !:!!|||{ } 230 bp {!}|||!.! .! TyrLeuTyr{Gl}++ ++{y}TyrValPheTh 3150361 : TATCTTTAC{GG}gt.........................ag{G}TACGTTTTCAC : 3150614 239 : aValAsnGluGluPheLysGlyIleValSerPheGlnPhePheSerSerMetSerM : 257 !:!!.!.|||:!!|||!:! !!|||:!!.!! ! |||.!!!!.||||||! ! !: rMetGlnGluLysPheArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuV 3150615 : GATGCAAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGG : 3150671 258 : etIleCysLeuThrIleTyrGlnLeuProTyrAlaGluAsn<->SerAlaThrPhe : 274 !::!:|||!!!! !:!:|||:!!||| !! !!.!! |||:!!! !!:! alValCysPheIleLeuTyrGluLeuAlaAsnThrProProIleSerSerLysTyr 3150672 : TAGTGTGTTTCATCCTGTACGAATTGGCGAACACGCCTCCAATCAGCTCCAAGTAC : 3150725 275 : LeuAlaThrAlaMetPheLeuMetCysValPheLeuGlnIlePheTyrTyrCysLe : 293 ||| ! !!.!:!!!:!||| |||:!!.!. !|||||||||!:!||||||! LeuGlnPheValLeuTyrLeuAlaCysMetMetThrGlnIlePhePheTyrCysTr 3150726 : CTGCAATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATCTTCTTTTACTGCTG : 3150782 294 : uCysGlyAsnValValLysAlaLys : 301 !! !|||.!. !:!!||| !||| pTyrGlyGluGlnLeuLysLeuLys 3150783 : GTACGGCGAGCAGTTGAAACTGAAG : 3150808 vulgar: gi|805795867|ref|XP_012143125.1| 118 301 . KQ414646.1 3150026 3150808 + 252 M 115 345 S 0 2 5 0 2 I 0 226 3 0 2 S 1 1 M 36 108 G 0 3 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150027 3150808 252 + . gene_id 5 ; sequence gi|805795867|ref|XP_012143125.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3150027 3150373 . + . KQ414646.1 exonerate:protein2genome:local exon 3150027 3150373 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150374 3150375 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150374 3150603 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150602 3150603 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150604 3150808 . + . KQ414646.1 exonerate:protein2genome:local exon 3150604 3150808 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150027 3150808 252 + . alignment_id 5 ; Query gi|805795867|ref|XP_012143125.1| ; Align 3150027 119 345 ; Align 3150605 235 108 ; Align 3150716 271 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795867|ref|XP_012143125.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 249 Query range: 125 -> 234 Target range: 3164331 -> 3164658 126 : AlaTyrThrAlaLeuLeuGlyPhePheAlaPheLeuValLeuPheMetThrIleVa : 144 !.!||| !::!|||||| !.!!! !||||||! !:!!! ! ! ! :!!:!!:! GlyTyrTrpSerLeuLeuLeuIleCysAlaPheTrpIleTyrValArgSerLeuLe 3164332 : GGCTACTGGAGTTTACTATTAATTTGTGCGTTCTGGATATACGTGAGATCGCTTTT : 3164386 145 : lIleGlyPheAsnLysArgLysLeuValPheArgMetTrpLeuProTyrAsnTyrS : 163 !! !! !|||!:!!..|||||||||:!!|||||| ||||||||||||:!!|||| uThrAspPheSerSerArgLysLeuMetPheArgAlaTrpLeuProTyrAspTyrS 3164387 : GACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGCATGGTTACCCTACGATTACT : 3164443 164 : erSerAlaArgLeuTyrIleLeuThrSerValTyrGluValMetValThrSerTyr : 181 || !!|||! !:!!!:!|||||||||! !|||:!!:!!!.!!!:!.!.!!!!! erProAlaProIlePheIleLeuThrPheValHisGlnAlaIleAlaAlaThrIle 3164444 : CCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCGACGATA : 3164497 182 : GlyValSerValSerIleAlaCysGluCysLeuTyrThrGlyLeuIleLeuHisVa : 200 !! !!!! !|||:!!.!! !!:! !|||||||||||||||:!::!!:!!:! CysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLeuIleAsnIl 3164498 : TGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTGATTAATAT : 3164554 201 : lCysCysGlnPheGluIleLeuGluHisArgPheLysMetLeuAsnThrAsnProV : 219 !! !|||||||||||||||||||||||||||.!.!:!! :!!!!.|||.!.! !! eTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysThrGluGlnA 3164555 : CTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAACTGAGCAGG : 3164611 220 : alTyrThrValAsnGlnCysAlaSerHisHisHisLeuIleTyrLys : 234 ! !!:!!|||!!.|||||||||..!|||||| !!! !||||||:!! spAspSerValLysGlnCysAlaGlnHisHisAspArgIleTyrGln 3164612 : ATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTATATACCAG : 3164658 vulgar: gi|805795867|ref|XP_012143125.1| 125 234 . KQ414646.1 3164331 3164658 + 249 M 109 327 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164332 3164658 249 + . gene_id 6 ; sequence gi|805795867|ref|XP_012143125.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164332 3164658 . + . KQ414646.1 exonerate:protein2genome:local exon 3164332 3164658 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164332 3164658 249 + . alignment_id 6 ; Query gi|805795867|ref|XP_012143125.1| ; Align 3164332 126 327 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795867|ref|XP_012143125.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 135 -> 235 Target range: 3174308 -> 3174612 136 : PheLeuValLeuPheMetThrIleValIleGlyPheAsnLysArgLysLeuValPh : 154 ::: ::: ||| !:!!||| !!! !.!|||!!.! |||:!!||| !.! TyrCysIleTrpPheSerSerIlePheThrAlaPheLysIleArgGluLeuProLe 3174309 : tactgtatatggTTCTCGTCGATCTTCACGGCTTTTAAGATCAGAGAGTTACCCCT : 3174363 155 : eArgMetTrpLeuProTyrAsnTyr----SerSerAlaArgLeuTyrIleLeuThr : 171 !||| |||||| !!!:!...! ####:!!!!! ! !!:!!!:!! !|||||| uArgGlyTrpLeuThrPheArgLeu####AlaThrLeuGlyIlePheSerLeuThr 3174364 : TCGAGGATGGTTAACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACC : 3174418 172 : SerValTyrGluValMetValThrSerTyrGlyValSerValSerIleAlaCysGl : 190 ! !!.!|||:!! !!:!:..! !! !!:! !..!|||!.!! !|||!.!! !!! TyrAlaTyrGlnPheValThrLeuIlePheLeuThrSerAlaIleIleGlySerAs 3174419 : TACGCTTATCAGTTTGTAACTCTGATATTCCTTACTTCTGCTATTATCGGTTCTGA : 3174475 191 : uCysLeuTyrThrGlyLeuIleLeuHisValCysCysGlnPheGluIleLeuGluH : 209 : !|||!:!!:!||||||:!::!!|||:!!! !||||||||||||||||||:!!| pAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnH 3174476 : CAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAAC : 3174532 210 : isArgPheLysMetLeuAsnThrAsnProValTyrThrValAsnGlnCysAlaSer : 227 |||||.!.|||! :!!!!. !!:!! !! !|||:!!!.!!!.|||||||||! ! isArgLeuLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPhe 3174533 : ATCGTCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTT : 3174586 228 : HisHisHisLeuIleTyrLysTyr : 235 ||||||:!!! !|||||||||!:! HisHisTyrArgIleTyrLysPhe 3174587 : CATCATTATCGCATATACAAGTTT : 3174612 vulgar: gi|805795867|ref|XP_012143125.1| 135 235 . KQ414646.1 3174308 3174612 + 170 M 27 81 F 0 4 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174309 3174612 170 + . gene_id 7 ; sequence gi|805795867|ref|XP_012143125.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174309 3174612 . + . KQ414646.1 exonerate:protein2genome:local exon 3174309 3174612 . + . insertions 0 ; deletions 0 ; frameshifts 4 KQ414646.1 exonerate:protein2genome:local similarity 3174309 3174612 170 + . alignment_id 7 ; Query gi|805795867|ref|XP_012143125.1| ; Align 3174309 136 81 ; Align 3174394 163 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795867|ref|XP_012143125.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 126 -> 234 Target range: 3180065 -> 3180389 127 : TyrThrAlaLeuLeuGlyPhePheAlaPheLeuValLeuPheMetThrIleValIl : 145 |||||| !:!!:!!! !.!.! !.! !! !..!:!!!!.! :!!:!!|||! TyrThrMetValValGluMetSerValAlaSerThrIleLeuAsnSerLeuValTh 3180066 : TACACAATGGTAGTCGAGATGTCGGTCGCCTCGACTATTTTAAACTCGTTAGTGAC : 3180120 146 : eGlyPheAsnLysArgLysLeuValPheArgMetTrpLeuProTyrAsnTyrSerS : 164 !..!|||.!. ! !!!:!|||..!!:!||| |||!!!||||||:!!|||!!!! rAsnPheGlnHisGlyArgLeuThrTyrArgGlyTrpPheProTyrAspTyrThrT 3180121 : CAACTTTCAACACGGCAGACTAACCTACAGAGGCTGGTTCCCTTACGATTACACGA : 3180177 165 : erAlaArgLeuTyrIleLeuThrSerValTyrGluValMetValThrSerTyrGly : 182 !!||| !|||!:! !||||||! !!.! :!!:!!:!: !..! ! ! hrAlaValLeuPheProLeuThrTyrAlaLeuGlnLeuLeuCysValLeuValTyr 3180178 : CCGCCGTACTTTTTCCATTGACATACGCTCTGCAGCTATTATGCGTGCTCGTATAT : 3180231 183 : ValSerValSerIleAlaCysGluCysLeuTyrThrGlyLeuIleLeuHisValCy : 201 !!!!:!! !:!!:!! !!: !|||!:! !||||||:!::!!!!.:!!|| SerTrpIleHisValSerValAspIleLeuPhePheGlyLeuLeuMetGlnLeuCy 3180232 : TCCTGGATCCACGTTTCAGTGGATATTCTCTTCTTCGGACTGTTGATGCAACTGTG : 3180288 202 : sCysGlnPheGluIleLeuGluHisArgPheLysMetLeuAsnThrAsnProValT : 220 ||||||||||!!:|||||| ||||||!..! :!!!..:!!.!. ! ! sCysGlnPheAspIleLeuPheSerArgPheSerSerIleThrSerGluAsnLysG 3180289 : CTGTCAATTCGAcattctcttctctcgtttcAGTAGCATAACGTCGGAGAACAAGG : 3180345 221 : yrThrValAsnGlnCysAlaSerHisHisHisLeuIleTyrLys : 234 !..!:!!...::!||| ! !!|||||| !! !||||||::! lyValLeuArgArgCysIleArgHisHisAspArgIleTyrArg 3180346 : GTGTTTTACGAAGATGCATTCGTCATCACGACAGAATTTACCGG : 3180389 vulgar: gi|805795867|ref|XP_012143125.1| 126 234 . KQ414646.1 3180065 3180389 + 166 M 108 324 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180066 3180389 166 + . gene_id 8 ; sequence gi|805795867|ref|XP_012143125.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180066 3180389 . + . KQ414646.1 exonerate:protein2genome:local exon 3180066 3180389 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180066 3180389 166 + . alignment_id 8 ; Query gi|805795867|ref|XP_012143125.1| ; Align 3180066 127 324 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795867|ref|XP_012143125.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 25 -> 137 Target range: 3154996 -> 3155332 26 : LeuGlnArgPheLeuTyrGlnIleTyrThrIleValAlaLysMetLeuLeuTyrSe : 44 !!!:!!|||||| !|||...:!!!:!:!! !.!! !!!:|||:!!|||! PheLysArgPheAlaTyrSerValPheSerTrpTyrThrLeuIleLeuValTyrIl 3154997 : TTTAAAAGATTCGCCTACTCTGTATTCTCGTGGTACACGTTAATACTGGTGTACAT : 3155051 45 : rLeuLeuIleLeuGlnThrLeuAspIleValLeuIleValGluAsnArgAspGluP : 63 ! !:!!.!! !|||! !:!!|||:!!:!!:!!! !||| !!.!!:!||||||| eThrValPheSerGlnIleMetAspLeuIleValAsnValThrThrGlnAspGluP 3155052 : CACGGTTTTCAGCCAAATCATGGACCTAATCGTGAACGTGACGACTCAAGACGAGT : 3155108 64 : heThrGluAsnIleAlaIleThrSerMetAlaPheAsnAlaLeuMetLysAsnThr : 81 ||!:!!!:|||.!! !||| ! ! !..! ! :!!|||..!||| ! heSerAspAsnPheTyrIleLeuLeuAlaCysAlaIleSerLeuGlnLysAlaGln 3155109 : TTAGCGACAATTTTTACATACTTCTGGCGTGTGCGATATCCTTGCAGAAAGCACAG : 3155162 82 : MetMetSerThrHisArgAlaAsnIleLeuThrLeuIleLysArgLeuGluArgAs : 100 ! :!!! !!.! !||| !|||:!!! ! !:!!||| ! ! !|||.!.!!!.! SerValLeuAsnSerArgLysAsnValHisArgMetIleAspLeuLeuAsnSerGl 3155163 : AGTGTGTTAAACAGTCGTAAGAATGTCCACCGTATGATCGATCTTTTGAACAGCGA : 3155219 101 : nTyrPheLeuProIleThrLysGlnGluMetGluIleArgSerArgPheAspArgI : 119 . !|||! !||| ! !|||:!!|||!!:|||||||||||||||.!!..!..! uProPheHisProGluCysLysGluGluIleGluIleArgSerArgIleSerGluH 3155220 : ACCTTTTCATCCAGAATGTAAGGAGGAAATCGAGATAAGAAGTAGGATCTCCGAGC : 3155276 120 : leIleGluSerThrSerLysAlaTyrThrAlaLeuLeuGlyPhePheAlaPheLeu : 137 ! !..!! ... ||||||..!|||:!!... |||...|||||| isAlaArg***ValLeuHisPheTyrThrGlyLeuIleSerProPheValPheLeu 3155277 : ACGCCAGGTaagttcttcatttttatacagGCTTAATCtctccttttgttttttta : 3155330 vulgar: gi|805795867|ref|XP_012143125.1| 25 137 . KQ414646.1 3154996 3155332 + 141 M 112 336 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3154997 3155332 141 + . gene_id 9 ; sequence gi|805795867|ref|XP_012143125.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3154997 3155332 . + . KQ414646.1 exonerate:protein2genome:local exon 3154997 3155332 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3154997 3155332 141 + . alignment_id 9 ; Query gi|805795867|ref|XP_012143125.1| ; Align 3154997 26 336 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795867|ref|XP_012143125.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 301 -> 362 Target range: 3161001 -> 3161184 302 : SerAlaGluPheProAspGluIlePheSerSerGlyTrpProSerTrpAsnAspSe : 320 ||| !|||.!! !||| !:!!|||..!|||..!||| !!:!! !!:!.!.|| SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSe 3161002 : AGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAG : 3161056 321 : rSerLysLysValLeuLeuMetValIleArgArgSerLysThrProIleGluPheT : 339 |!!!||||||..!||||||! !:!!!!: !|||||| !! !||||||||||||| rThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheT 3161057 : CACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCA : 3161113 340 : hrSerMetHisIleValThrLeuSerLeuGluSerPheMetSerLeuLeuLysThr : 357 ||.!! !:!! !! !!:!!!:!||||||||||||! |||:!!! ! hrGlyAlaPheValPheProValAsnLeuGluSerPheLysSerValCysIleLys 3161114 : CCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAAAGTGTTTGTatcaaa : 3161167 358 : SerTyrSerAlaPhe : 362 ||| ||| IleTyrIlePhePhe 3161168 : atatatatatttttc : 3161184 vulgar: gi|805795867|ref|XP_012143125.1| 301 362 . KQ414646.1 3161001 3161184 + 116 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3161002 3161184 116 + . gene_id 10 ; sequence gi|805795867|ref|XP_012143125.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3161002 3161184 . + . KQ414646.1 exonerate:protein2genome:local exon 3161002 3161184 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3161002 3161184 116 + . alignment_id 10 ; Query gi|805795867|ref|XP_012143125.1| ; Align 3161002 302 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795867|ref|XP_012143125.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 301 -> 362 Target range: 3175212 -> 3175395 302 : SerAlaGluPheProAspGluIlePheSerSerGlyTrpProSerTrpAsnAspSe : 320 ||| !|||.!! !||| !:!!|||..!|||..!||| !!:!! !!:!.!.|| SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSe 3175213 : AGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAG : 3175267 321 : rSerLysLysValLeuLeuMetValIleArgArgSerLysThrProIleGluPheT : 339 |!!!||||||..!||||||! !:!!!!: !|||||| !! !||||||||||||| rThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheT 3175268 : CACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCA : 3175324 340 : hrSerMetHisIleValThrLeuSerLeuGluSerPheMetSerLeuLeuLysThr : 357 ||.!! !:!! !! !!:!!!:!||||||||||||! |||:!!! ! hrGlyAlaPheValPheProValAsnLeuGluSerPheLysSerValCysIleLys 3175325 : CCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAAAGTGTTTGTatcaaa : 3175378 358 : SerTyrSerAlaPhe : 362 ||| ||| IleTyrIlePhePhe 3175379 : atatatatatttttc : 3175395 vulgar: gi|805795867|ref|XP_012143125.1| 301 362 . KQ414646.1 3175212 3175395 + 116 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3175213 3175395 116 + . gene_id 11 ; sequence gi|805795867|ref|XP_012143125.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3175213 3175395 . + . KQ414646.1 exonerate:protein2genome:local exon 3175213 3175395 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3175213 3175395 116 + . alignment_id 11 ; Query gi|805795867|ref|XP_012143125.1| ; Align 3175213 302 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795867|ref|XP_012143125.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 299 -> 358 Target range: 3178740 -> 3178917 300 : AlaLysSerAlaGluPheProAspGluIlePheSerSerGlyTrpProSerTrpAs : 318 :!!:!!|||! !:!! ! !!!:! |||!:!..!! !! !||| !!:!! SerGlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuPr 3178741 : TCCCAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCC : 3178795 319 : nAspSerSerLysLysValLeuLeuMetValIleArgArgSerLysThrProIleG : 337 ! !..!! !!:!|||! !||||||:!!:!!!!: !||||||||| !|||:!!: oThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValL 3178796 : CACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTA : 3178852 338 : luPheThrSerMetHisIleValThrLeuSerLeuGluSerPheMetSerLeuLeu : 355 !!.!.|||||| |||:!!|||..!|||||| !|||||||||||||||:!! ! ysMetThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerValSer 3178853 : AAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTTAGT : 3178906 356 : LysThrSer : 358 !:!! !||| ArgIleSer 3178907 : AGAATTTCC : 3178917 vulgar: gi|805795867|ref|XP_012143125.1| 299 358 . KQ414646.1 3178740 3178917 + 110 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178741 3178917 110 + . gene_id 12 ; sequence gi|805795867|ref|XP_012143125.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178741 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178741 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178741 3178917 110 + . alignment_id 12 ; Query gi|805795867|ref|XP_012143125.1| ; Align 3178741 300 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805818116|ref|XP_003707057.2| PREDICTED: odorant receptor Or1-like isoform X1 [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 272 -> 340 Target range: 3155808 -> 3156009 273 : PheSerLysGlnIleGlnAspThrPheGlyThrValIlePheLeuGlnPheLeuVa : 291 |||!!! ..!|||.!.!!: !|||! !! !!.!|||||| !|||||| !|| PheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAlaVa 3155809 : TTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGT : 3155863 292 : lAsnCysIleIleIleCysLeuIleAlaPheAsnIleAlaGlnMetLysAspTyrI : 310 |!:! :!: ||||||!!!! ! !!:! :!! ! ! ..!||| ! lSerThrLeuAlaIleCysPheAsnLeuTyr---LeuLeuThrGlySerAspValT 3155864 : GAGTACGCTGGCGATATGCTTCAATCTTTAC---CTATTAACAGGATCAGATGTGA : 3155917 311 : leProTyrValLeuCysGlyMetLeuMetTyrMetCysCysMetThrTyrGlnIle : 328 ||| ! !! ! ! !!!::!!||||||! !!|||||| ! |||||| hrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIle 3155918 : CGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATA : 3155971 329 : PheIleTyrCysTrpHisGlyAsnGluLeuTyrLeu : 340 |||||||||||||||:!!|||||||||:!! ! ||| PheIleTyrCysTrpTyrGlyAsnGluValLysLeu 3155972 : TTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTG : 3156009 vulgar: gi|805818116|ref|XP_003707057.2| 272 340 . KQ414646.1 3155808 3156009 + 124 M 29 87 G 1 0 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155809 3156009 124 + . gene_id 1 ; sequence gi|805818116|ref|XP_003707057.2| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155809 3156009 . + . KQ414646.1 exonerate:protein2genome:local exon 3155809 3156009 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3155809 3156009 124 + . alignment_id 1 ; Query gi|805818116|ref|XP_003707057.2| ; Align 3155809 273 87 ; Align 3155896 303 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805818116|ref|XP_003707057.2| PREDICTED: odorant receptor Or1-like isoform X1 [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 266 -> 340 Target range: 3178369 -> 3178588 267 : SerAsnMetIlePheAspPheSerLysGlnIleGlnAspThrPheGlyThrValIl : 285 ...|||...||| |||!!!:!! !:!:.!. !..!||| ! !:!!|| GlyAsnPheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIl 3178370 : ggaaatttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGAT : 3178424 286 : ePheLeuGlnPheLeuValAsnCysIleIleIleCysLeuIleAlaPheAsnIleA : 304 |||||||||||||! !:!!!:!! ! :!::!:||||||! ! !!:!!!.!!:: ePheLeuGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetS 3178425 : TTTCCTGCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGT : 3178481 305 : laGlnMetLysAspTyrIleProTyrValLeuCysGlyMetLeuMetTyrMetCys : 322 !! !!!:!!. !:! ! !!!! ! !! ! |||:!:||| erThrIleAsnProPhe---SerMetAsnPheValTrpCysAlaSerTyrLeuCys 3178482 : CGACGATTAATCCATTT---AGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGC : 3178532 323 : CysMetThrTyrGlnIlePheIleTyrCysTrpHisGlyAsnGluLeuTyrLeu : 340 |||||| ! |||:!:!:!:!!||||||||| !|||||||||:!! ||| CysMetLeuThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeu 3178533 : TGTATGCTCACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTG : 3178588 vulgar: gi|805818116|ref|XP_003707057.2| 266 340 . KQ414646.1 3178369 3178588 + 124 M 43 129 G 1 0 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178370 3178588 124 + . gene_id 2 ; sequence gi|805818116|ref|XP_003707057.2| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178370 3178588 . + . KQ414646.1 exonerate:protein2genome:local exon 3178370 3178588 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3178370 3178588 124 + . alignment_id 2 ; Query gi|805818116|ref|XP_003707057.2| ; Align 3178370 267 129 ; Align 3178499 311 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805818116|ref|XP_003707057.2| PREDICTED: odorant receptor Or1-like isoform X1 [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 276 -> 340 Target range: 3150616 -> 3150805 277 : IleGlnAspThrPheGlyThrValIlePheLeuGlnPheLeuValAsnCysIleIl : 295 !!:|||!!:! !||| !! !:!!||| !:!!|||.!!||| !!:! :!::! MetGlnGluLysPheArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuVa 3150617 : ATGCAAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGGT : 3150671 296 : eIleCysLeuIleAlaPheAsnIleAlaGlnMetLysAspTyrIleProTyrValL : 314 !:!:|||!!!||| !!:!.!.:!:|||.!.! ! ||| !! ! !! lValCysPheIleLeuTyrGluLeuAlaAsnThrProPro---IleSerSerLysT 3150672 : AGTGTGTTTCATCCTGTACGAATTGGCGAACACGCCTCCA---ATCAGCTCCAAGT : 3150725 315 : euCysGlyMetLeuMetTyrMetCysCysMetThrTyrGlnIlePheIleTyrCys : 332 ! !.!.:!!:!!|||:!!..!||||||! ! |||||||||.!!|||||| yrLeuGlnPheValLeuTyrLeuAlaCysMetMetThrGlnIlePhePheTyrCys 3150726 : ACCTGCAATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATCTTCTTTTACTGC : 3150779 333 : TrpHisGlyAsnGluLeuTyrLeu : 340 |||:!!|||.!.:!!||| ! ||| TrpTyrGlyGluGlnLeuLysLeu 3150780 : TGGTACGGCGAGCAGTTGAAACTG : 3150805 vulgar: gi|805818116|ref|XP_003707057.2| 276 340 . KQ414646.1 3150616 3150805 + 105 M 32 96 G 1 0 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150617 3150805 105 + . gene_id 3 ; sequence gi|805818116|ref|XP_003707057.2| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150617 3150805 . + . KQ414646.1 exonerate:protein2genome:local exon 3150617 3150805 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3150617 3150805 105 + . alignment_id 3 ; Query gi|805818116|ref|XP_003707057.2| ; Align 3150617 277 96 ; Align 3150713 310 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795873|ref|XP_012143127.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 192 Query range: 86 -> 197 Target range: 3160071 -> 3160407 87 : TyrAlaIleCysPhePheGlyGlyAlaValPheAlaPheValThrThrThrIleIl : 105 |||.!!:!!||| ! !.!!|||..! !!.!!:::!! !:!!.!!!!:! TyrThrValCysThrValLeuSerAlaThrGlyValTrpMetLeuSerAlaMetTh 3160072 : TATACGGTTTGTACAGTACTGAGCGCGACTGGTGTATGGATGTTGTCGGCCATGAC : 3160126 106 : eAspPheLysLysArgArgLeuIleValSerValTrpLeuProTyrAsnTyr<->S : 123 ! |||!:!! |||..!||| !:!! !!||||||||||||!:!:!!||| : rAlaPheArgIleArgGluLeuProLeuArgValTrpLeuProPheAspTyrArgA 3160127 : GGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGGTTACCTTTCGATTATAGAG : 3160183 124 : erSerAlaThrLeuTyrLeuLeuThrSerAlaTyrGluTrpValAlaGlyGluTyr : 141 !!!!! ! !:!!!:! !||||||! !||||||:!!!::|||.!! ! !!:! laThrLeuGlyIlePheSerLeuThrTyrAlaTyrGlnPheValThrLeuIlePhe 3160184 : CCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAGTTTGTAACTCTGATATTC : 3160237 142 : AlaIleMetThrSerAlaAlaCysAspCysLeuTyrIleGlyLeuLeuLeuHisIl : 160 !! !! .!!! ! !!.! !||| !|||!:!! !|||||||||:!!||||| IleThrThrAlaIleMetGlyThrAspAsnLeuPheSerGlyLeuLeuIleHisIl 3160238 : ATTACTACCGCGATTATGGGTACTGACAATCTATTCAGCGGACTGTTGATCCACAT : 3160294 161 : eCysGlyGlnIleLysValLeuGluHisArgPheGlnThrLeuThrGluGluGlyT : 179 |! ! !!|||.!!:!!:!!|||:!!||||||.!.:!!!:!:!!! ! !!: !! eTyrCysGlnPheGluIleLeuGlnHisArgLeuLysSerIleLysProAspArgG 3160295 : TTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGAGCATTAAACCTGACAGGG : 3160351 180 : yrTyrSerLeuAsnGlnCysAlaAlaHisHisTyrAsnIleTyrGlnPheValPhe : 197 ! |||||| !!!.||||||||| !|||||||||..!||||||:!!||||||::: luTyrSerAlaLysGlnCysAlaPheHisHisTyrArgIleTyrLysPheValTyr 3160352 : AGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGCATATACAAGTTTgtctac : 3160405 vulgar: gi|805795873|ref|XP_012143127.1| 86 197 . KQ414646.1 3160071 3160407 + 192 M 36 108 G 0 3 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160072 3160407 192 + . gene_id 1 ; sequence gi|805795873|ref|XP_012143127.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160072 3160407 . + . KQ414646.1 exonerate:protein2genome:local exon 3160072 3160407 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160072 3160407 192 + . alignment_id 1 ; Query gi|805795873|ref|XP_012143127.1| ; Align 3160072 87 108 ; Align 3160183 123 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795873|ref|XP_012143127.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 190 Query range: 233 -> 326 Target range: 3155931 -> 3156416 234 : IleGluThrLeuIleTyrSerPheGlyThrPheAlaGlnIleAlaTyrTyrCysTr : 252 :!:|||! !:!!!!:|||||| ! !!! !.!!.!!|||||| ! !|||||||| ValGluIleIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysTr 3155932 : GTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTG : 3155986 253 : pPheSerAsnGluValLysLeuLys >>>> Target Intron 1 >>>> Se : 261 |!:!.!!|||||||||||||||||| 73 bp || pTyrGlyAsnGluValLysLeuLys++ ++Se 3155987 : GTACGGGAACGAAGTTAAGCTGAAGgt.........................agAG : 3156086 262 : rIleGluPheAlaAspGluIlePheTyrSerAspTrpValSerTrpGlyAsnGluA : 280 |:!!|||.!!:!!:!! !||||||:!! !||||||..! !!!::! !!!.! . rLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAlaT 3156087 : CCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGCTA : 3156143 281 : laLysLysValPheLeuMetValLeuThrArgSerAlaGlnProIleGluPheSer : 298 !!|||::! !.!.|||! :!!:!!! !|||:!!:!!..!|||||||||.!!! ! hrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleIle 3156144 : CAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCATC : 3156197 299 : CysIleSerIleLeuProIleAsnLeuGluSerPheMetLys >>>> Target : 313 !!:!! !!:!:||| !!:!:||||||!!:||||||:!: 13 SerValArgValLeuSerValAsnLeuAspSerPheValAla++ 3156198 : AGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt............ : 3156244 314 : Intron 2 >>>> LeuLeuLysThrSerTyrSerAlaPheAsnIleMetGlnGl : 326 3 bp ||||||||||||||||||||||||!:!|||:!!:!:|||!: ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGlnAr 3156245 : .............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAACG : 3156414 327 : n : 326 : g 3156415 : C : 3156416 vulgar: gi|805795873|ref|XP_012143127.1| 233 326 . KQ414646.1 3155931 3156416 + 190 M 27 81 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 129 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155932 3156416 190 + . gene_id 2 ; sequence gi|805795873|ref|XP_012143127.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3155932 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155932 3156012 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156013 3156014 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156013 3156085 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3156084 3156085 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156086 3156241 . + . KQ414646.1 exonerate:protein2genome:local exon 3156086 3156241 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156242 3156243 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156242 3156374 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3156373 3156374 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156375 3156416 . + . KQ414646.1 exonerate:protein2genome:local exon 3156375 3156416 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155932 3156416 190 + . alignment_id 2 ; Query gi|805795873|ref|XP_012143127.1| ; Align 3155932 234 81 ; Align 3156086 261 156 ; Align 3156375 313 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795873|ref|XP_012143127.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 260 -> 328 Target range: 3165264 -> 3165542 261 : SerIleGluPheAlaAspGluIlePheTyrSerAspTrpValSerTrpGlyAsnGl : 279 |||:!!:!!.!! !! !! !||||||:!!|||||||||..!|||! !..!|||.! SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAs 3165265 : AGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAA : 3165319 280 : uAlaLysLysValPheLeuMetValLeuThrArgSerAlaGlnProIleGluPheS : 298 .!.!! !:!!.!.!!|||!!::!!:!!! !|||:!!!.!::!||||||||||||! nValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheT 3165320 : CGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCA : 3165376 299 : erCysIleSerIleLeuProIleAsnLeuGluSerPheMetLys >>>> Targe : 313 !! !!||| !:!!:!! !!:!:|||||||||||||||||| ! hrSerIleHisValValSerValAsnLeuGluSerPheMetAla++ 3165377 : CCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt.......... : 3165423 314 : t Intron 1 >>>> LeuLeuLysThrSerTyrSerAlaPheAsnIleMetGln : 325 74 bp :!!:!!||||||||||||||||||||||||!!:!!:||| ++ValIleLysThrSerTyrSerAlaPheAsnMetIleGln 3165424 : ...............agGTAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAA : 3165531 326 : GlnSerArg : 328 ||||||!:! GlnSerLys 3165532 : CAAAGCAAA : 3165542 vulgar: gi|805795873|ref|XP_012143127.1| 260 328 . KQ414646.1 3165264 3165542 + 158 M 52 156 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3165265 3165542 158 + . gene_id 3 ; sequence gi|805795873|ref|XP_012143127.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3165265 3165420 . + . KQ414646.1 exonerate:protein2genome:local exon 3165265 3165420 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165421 3165422 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165421 3165494 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3165493 3165494 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165495 3165542 . + . KQ414646.1 exonerate:protein2genome:local exon 3165495 3165542 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3165265 3165542 158 + . alignment_id 3 ; Query gi|805795873|ref|XP_012143127.1| ; Align 3165265 261 156 ; Align 3165495 313 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795873|ref|XP_012143127.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 126 -> 197 Target range: 3174405 -> 3174618 127 : LeuTyrLeuLeuThrSerAlaTyrGluTrpValAlaGlyGluTyrAlaIleMetTh : 145 :!!!:! !||||||! !||||||:!!!::|||.!! ! !!:! !! ! .! IlePheSerLeuThrTyrAlaTyrGlnPheValThrLeuIlePheLeuThrSerAl 3174406 : ATTTTCAGCCTTACCTACGCTTATCAGTTTGTAACTCTGATATTCCTTACTTCTGC : 3174460 146 : rSerAlaAlaCysAspCysLeuTyrIleGlyLeuLeuLeuHisIleCysGlyGlnI : 164 !! ! !!.!! !||| !|||!:!! !|||||||||:!!||||||! ! !!|||. aIleIleGlySerAspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnP 3174461 : TATTATCGGTTCTGACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAAT : 3174517 165 : leLysValLeuGluHisArgPheGlnThrLeuThrGluGluGlyTyrTyrSerLeu : 182 !!:!!:!!|||:!!||||||.!.:!!!:!:!!! ! !!: !! ! |||||| ! heGluIleLeuGlnHisArgLeuLysSerIleLysProAspArgGluTyrSerAla 3174518 : TCGAGATACTCCAACATCGTCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCG : 3174571 183 : AsnGlnCysAlaAlaHisHisTyrAsnIleTyrGlnPheValPhe : 197 !!.||||||||| !|||||||||..!||||||:!!||||||::: LysGlnCysAlaPheHisHisTyrArgIleTyrLysPheValTyr 3174572 : AAACAGTGTGCTTTTCATCATTATCGCATATACAAGTTTgtctac : 3174618 vulgar: gi|805795873|ref|XP_012143127.1| 126 197 . KQ414646.1 3174405 3174618 + 150 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174406 3174618 150 + . gene_id 4 ; sequence gi|805795873|ref|XP_012143127.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174406 3174618 . + . KQ414646.1 exonerate:protein2genome:local exon 3174406 3174618 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3174406 3174618 150 + . alignment_id 4 ; Query gi|805795873|ref|XP_012143127.1| ; Align 3174406 127 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795873|ref|XP_012143127.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 260 -> 327 Target range: 3161001 -> 3161363 261 : SerIleGluPheAlaAspGluIlePheTyrSerAspTrpValSerTrpGlyAsnGl : 279 |||:!!|||.!!..!||| !:!!||| ! |||:!!|||..!:!! !.!!.!... SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSe 3161002 : AGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAG : 3161056 280 : uAlaLysLysValPheLeuMetValLeuThrArgSerAlaGlnProIleGluPheS : 298 ..!!||||||..!.!!|||! !:!!:!! !|||||| !:!!||||||||||||! rThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheT 3161057 : CACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCA : 3161113 299 : erCysIleSerIleLeuProIleAsnLeuGluSerPheMetLys >>>> Targe : 313 !! !! !! !:!!!!!|||:!!|||||||||||||||! !.. hrGlyAlaPheValPheProValAsnLeuGluSerPheLysSer++ 3161114 : CCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAAAGTgt.......... : 3161160 314 : t Intron 1 >>>> LeuLeuLysThrSerTyrSerAlaPheAsnIleMetGln : 325 161 bp |||:!!|||||||||||||||!.!||||||:!!!!:||| ++LeuValLysThrSerTyrSerValPheAsnValIleGln 3161161 : ...............agTTGGTGAAAACTTCCTATTCGGTATTCAACGTAATCCAG : 3161355 326 : GlnSer : 327 |||!!! GlnThr 3161356 : CAAACG : 3161363 vulgar: gi|805795873|ref|XP_012143127.1| 260 327 . KQ414646.1 3161001 3161363 + 147 M 52 156 5 0 2 I 0 157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3161002 3161363 147 + . gene_id 5 ; sequence gi|805795873|ref|XP_012143127.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3161002 3161157 . + . KQ414646.1 exonerate:protein2genome:local exon 3161002 3161157 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3161158 3161159 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3161158 3161318 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3161317 3161318 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3161319 3161363 . + . KQ414646.1 exonerate:protein2genome:local exon 3161319 3161363 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3161002 3161363 147 + . alignment_id 5 ; Query gi|805795873|ref|XP_012143127.1| ; Align 3161002 261 156 ; Align 3161319 313 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795873|ref|XP_012143127.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 260 -> 327 Target range: 3175212 -> 3175574 261 : SerIleGluPheAlaAspGluIlePheTyrSerAspTrpValSerTrpGlyAsnGl : 279 |||:!!|||.!!..!||| !:!!||| ! |||:!!|||..!:!! !.!!.!... SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSe 3175213 : AGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAG : 3175267 280 : uAlaLysLysValPheLeuMetValLeuThrArgSerAlaGlnProIleGluPheS : 298 ..!!||||||..!.!!|||! !:!!:!! !|||||| !:!!||||||||||||! rThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheT 3175268 : CACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCA : 3175324 299 : erCysIleSerIleLeuProIleAsnLeuGluSerPheMetLys >>>> Targe : 313 !! !! !! !:!!!!!|||:!!|||||||||||||||! !.. hrGlyAlaPheValPheProValAsnLeuGluSerPheLysSer++ 3175325 : CCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAAAGTgt.......... : 3175371 314 : t Intron 1 >>>> LeuLeuLysThrSerTyrSerAlaPheAsnIleMetGln : 325 161 bp |||:!!|||||||||||||||!.!||||||:!!!!:||| ++LeuValLysThrSerTyrSerValPheAsnValIleGln 3175372 : ...............agTTGGTGAAAACTTCCTATTCGGTATTCAACGTAATCCAG : 3175566 326 : GlnSer : 327 |||!!! GlnThr 3175567 : CAAACG : 3175574 vulgar: gi|805795873|ref|XP_012143127.1| 260 327 . KQ414646.1 3175212 3175574 + 147 M 52 156 5 0 2 I 0 157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3175213 3175574 147 + . gene_id 6 ; sequence gi|805795873|ref|XP_012143127.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3175213 3175368 . + . KQ414646.1 exonerate:protein2genome:local exon 3175213 3175368 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3175369 3175370 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3175369 3175529 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3175528 3175529 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3175530 3175574 . + . KQ414646.1 exonerate:protein2genome:local exon 3175530 3175574 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3175213 3175574 147 + . alignment_id 6 ; Query gi|805795873|ref|XP_012143127.1| ; Align 3175213 261 156 ; Align 3175530 313 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795873|ref|XP_012143127.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 0 -> 81 Target range: 3157441 -> 3157684 1 : MetMetTyrSerLeuPheValAlaGlnSerLeuAspIleAlaPheHisValThrAs : 19 :::::: !|||||| !!:!!:!!|||! !||||||:!!|||.!!:!!||| !!: LeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIleAsnValGluSe 3157442 : cttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCAACGTGGAGAG : 3157496 20 : nLeuAspGluPheSerAspAsnPheAlaThrThrSerLeuLeuLeuValAspCysI : 38 !! !|||!!:|||||||||||||||:::...|||:!!:!!:!!!!!:!! !! . rGlnAspAspPheSerAspAsnPheSerValThrAlaValValPheLeuThrTrpP 3157497 : CCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTTCTCACGTGGT : 3157553 39 : leLysHisGlyValLeuSerMetArgArgAspSerLeuIleGluLeuThrAspMet : 56 !!|||! !..!:!!||| !!!:||||||! !:!!!!||| |||! !|||! ! heLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuIleAspThr 3157554 : TCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGATCGATACG : 3157607 57 : LeuSerLysAsnLeuPheAlaSerValThrLysArgGluIleLysIleArgGluAr : 75 |||..!!!.!!.! !|||:!! !!||| !! !..!|||! !:!!||||||! !!: LeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIleArgAlaLy 3157608 : CTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATTAGAGCGAA : 3157664 76 : gTyrAspLysLeuValGlu : 81 !!:!!!:|||:!!..!||| sPheGluLysIleThrGlu 3157665 : ATTCGAGAAGATCACCGAG : 3157684 vulgar: gi|805795873|ref|XP_012143127.1| 0 81 . KQ414646.1 3157441 3157684 + 143 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157442 3157684 143 + . gene_id 7 ; sequence gi|805795873|ref|XP_012143127.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3157442 3157684 . + . KQ414646.1 exonerate:protein2genome:local exon 3157442 3157684 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157442 3157684 143 + . alignment_id 7 ; Query gi|805795873|ref|XP_012143127.1| ; Align 3157442 1 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795873|ref|XP_012143127.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 0 -> 81 Target range: 3163969 -> 3164212 1 : MetMetTyrSerLeuPheValAlaGlnSerLeuAspIleAlaPheHisValThrAs : 19 :!::!: !|||||| !:!!:!!|||! !||||||:!!|||.!!:!!||| !!: LeuLeuSerSerLeuAlaLeuSerGlnIleLeuAspValAlaIleAsnValGluSe 3163970 : CTTCTAAGCAGCCTCGCCCTCTCGCAAATATTAGACGTAGCGATCAACGTGGAGAG : 3164024 20 : nLeuAspGluPheSerAspAsnPheAlaThrThrSerLeuLeuLeuValAspCysI : 38 !! !|||!!:|||||||||||||||::: |||:!!:!!:!!!!!:!! !! . rGlnAspAspPheSerAspAsnPheSerIleThrAlaValValPheLeuThrTrpP 3164025 : CCAGGATGACTTCagtgacaatttttctatcaccGCTGTGGTGTTTCTCACGTGGT : 3164081 39 : leLysHisGlyValLeuSerMetArgArgAspSerLeuIleGluLeuThrAspMet : 56 !!|||! !..!:!!||| !!!:||||||! !:!!!!||| |||! !|||! ! heLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuIleAspThr 3164082 : TCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGATCGATACG : 3164135 57 : LeuSerLysAsnLeuPheAlaSerValThrLysArgGluIleLysIleArgGluAr : 75 |||..!!!.!!.! !|||:!! !!||| !! !..!|||! !:!!||||||! !!: LeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIleArgAlaLy 3164136 : CTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATTAGAGCGAA : 3164192 76 : gTyrAspLysLeuValGlu : 81 !!:!!!:|||:!!..!||| sPheGluLysIleThrGlu 3164193 : ATTCGAGAAGATCACCGAG : 3164212 vulgar: gi|805795873|ref|XP_012143127.1| 0 81 . KQ414646.1 3163969 3164212 + 141 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3163970 3164212 141 + . gene_id 8 ; sequence gi|805795873|ref|XP_012143127.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3163970 3164212 . + . KQ414646.1 exonerate:protein2genome:local exon 3163970 3164212 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3163970 3164212 141 + . alignment_id 8 ; Query gi|805795873|ref|XP_012143127.1| ; Align 3163970 1 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795873|ref|XP_012143127.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 259 -> 328 Target range: 3153707 -> 3154098 260 : LysSerIleGluPheAlaAspGluIlePheTyrSerAspTrpValSerTrpGlyAs : 278 :!!|||:!!|||.!!!.!|||..!:!! !!|||:!! ..! !! !! !.! GlnSerLeuGluIleValAspArgValThrAsnSerAsnIleThrValSerAspGl 3153708 : CAGAGTCTCGAAATTGTGGACAGAGTAACGAACAGTAATATAACCGTGTCGGACGA : 3153762 279 : nGluAlaLysLysValPheLeuMetValLeuThrArgSerAlaGlnProIleGluP : 297 ....:!!||||||:!!.!.:!!:!!:!!:!! !|||:!! !:!!|||:!!|||| uSerSerLysLysIleLeuValLeuMetIleArgArgAlaLeuGluProValGluP 3153763 : AAGCTCCAAGAAGATTCTGGTATTGATGATACGACGAGCTTTGGAGCCTGTCGAGT : 3153819 298 : heSerCysIleSerIleLeuProIleAsnLeuGluSerPheMetLys >>>> Ta : 313 ||!!! !!:!! !!|||:!! !!:!!|||||||||||||||! !..! heThrGlyLeuArgIleMetSerValAsnLeuGluSerPheThrSer++ 3153820 : TCACCGGCCTTCGTATCATGTCTGTTAATCTCGAGTCATTCACGTCGgt....... : 3153869 314 : rget Intron 1 >>>> LeuLeuLysThrSerTyrSerAlaPheAsnIleMet : 324 184 bp |||||||||:!!||||||:!!|||||||||!!::!: ++LeuLeuLysSerSerTyrAlaAlaPheAsnMetLeu 3153870 : ..................agCTGTTGAAATCCTCCTACGCGGCTTTCAATATGCTC : 3154084 325 : GlnGlnSerArg : 328 |||::: ||| GlnGluArgArg 3154085 : Caggaaagaagg : 3154098 vulgar: gi|805795873|ref|XP_012143127.1| 259 328 . KQ414646.1 3153707 3154098 + 130 M 53 159 5 0 2 I 0 180 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153708 3154098 130 + . gene_id 9 ; sequence gi|805795873|ref|XP_012143127.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3153708 3153866 . + . KQ414646.1 exonerate:protein2genome:local exon 3153708 3153866 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3153867 3153868 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3153867 3154050 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3154049 3154050 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3154051 3154098 . + . KQ414646.1 exonerate:protein2genome:local exon 3154051 3154098 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153708 3154098 130 + . alignment_id 9 ; Query gi|805795873|ref|XP_012143127.1| ; Align 3153708 260 159 ; Align 3154051 313 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795873|ref|XP_012143127.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 0 -> 81 Target range: 3159740 -> 3159983 1 : MetMetTyrSerLeuPheValAlaGlnSerLeuAspIleAlaPheHisValThrAs : 19 :!::!: !!!!!!!||||||||||||! !||||||||| |||:::||| !|| ValLeuSerThrPhePheValAlaGlnIleLeuAspIleIlePheAsnValGluAs 3159741 : GTTCTTAGCACGTTTTTCGTCGCCCAGATATTggacattattttcaacgtgGAGAA : 3159795 20 : nLeuAspGluPheSerAspAsnPheAlaThrThrSerLeuLeuLeuValAspCysI : 38 |! !|||||||||||||||||||||..!! !|||!!!! !:!!:!! !..! ! nGlnAspGluPheSerAspAsnPheCysIleThrCysCysValMetAsnSerLeuG 3159796 : TCAAGACGAGTTTAGCGACAATTTCTGCATAACGTGCTGCGTGATGAACAGCCTTG : 3159852 39 : leLysHisGlyValLeuSerMetArgArgAspSerLeuIleGluLeuThrAspMet : 56 !||| ! !||| !!!: !!|||!!:! !:!! !.!.|||! !||| ! lyLysLeuTyrSerLeuLeuIleGlyArgGluMetIleGlnAsnLeuIleAspSer 3159853 : GAAAGTTGTACAGCTTGCTGATAGGACGAGAAATGATCCAAAATTTAATAGACTCG : 3159906 57 : LeuSerLysAsnLeuPheAlaSerValThrLysArgGluIleLysIleArgGluAr : 75 |||..!!..:!!! !.!! ! !!:!! !:!! !|||! !:!!|||||| !|| LeuGlnSerAspProLeuArgProLeuAspGluValGluAsnGluIleArgLeuAr 3159907 : CTACAAAGTGACCCTCTTAGGCCGTTGGACGAAGTGGAGAATGAAATTCGATTGAG : 3159963 76 : gTyrAspLysLeuValGlu : 81 |:!!!!:||| !:!!||| gHisGluLysThrIleGlu 3159964 : ACACGAGAAGACAATCGAG : 3159983 vulgar: gi|805795873|ref|XP_012143127.1| 0 81 . KQ414646.1 3159740 3159983 + 121 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3159741 3159983 121 + . gene_id 10 ; sequence gi|805795873|ref|XP_012143127.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3159741 3159983 . + . KQ414646.1 exonerate:protein2genome:local exon 3159741 3159983 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3159741 3159983 121 + . alignment_id 10 ; Query gi|805795873|ref|XP_012143127.1| ; Align 3159741 1 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795873|ref|XP_012143127.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 260 -> 311 Target range: 3158736 -> 3158889 261 : SerIleGluPheAlaAspGluIlePheTyrSerAspTrpValSerTrpGlyAsnGl : 279 |||:!!:!!.!! !! !! !||||||:!!|||||||||..!|||! !..!|||.! SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAs 3158737 : AGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAA : 3158791 280 : uAlaLysLysValPheLeuMetValLeuThrArgSerAlaGlnProIleGluPheS : 298 .!.!! !:!!.!.!!|||!!::!!:!!! !|||:!!!.!::!||||||||||||! nValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheT 3158792 : CGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCA : 3158848 299 : erCysIleSerIleLeuProIleAsnLeuGluSerPheMet : 311 !! !!||| !:!!:!! !!:!:|||||||||||||||||| hrSerIleHisValValSerValAsnLeuGluSerPheMet 3158849 : CCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATG : 3158889 vulgar: gi|805795873|ref|XP_012143127.1| 260 311 . KQ414646.1 3158736 3158889 + 119 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158737 3158889 119 + . gene_id 11 ; sequence gi|805795873|ref|XP_012143127.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158737 3158889 . + . KQ414646.1 exonerate:protein2genome:local exon 3158737 3158889 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3158737 3158889 119 + . alignment_id 11 ; Query gi|805795873|ref|XP_012143127.1| ; Align 3158737 261 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795881|ref|XP_012143130.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 489 Query range: 91 -> 332 Target range: 1946894 -> 1945692 92 : TyrThrLeuLeuValGluSerSerValThrLeuTyrValCysValAspIleLeuLy : 110 !::!::||||||::: |||::! !! !:!!|||||| ! ! !:!::!! ! TrpSerLeuLeuLeuIleSerThrPhePheIleTyrValArgSerLeuLeuIleAs 1946894 : TGGAGtttactattaatttctacGTTCTTTATATACGTGAGATCGCTTTTGATAGA : 1946840 111 : sPheAspAspLysLysLeuLeuTyrArgIleTrpLeuProSerGluLeuLeuProS : 129 |||..!:!!!:!||||||:!!!:!||| !|||:!!|||! !!!:! !! !|||: pPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrAspTyrSerProA 1946839 : TTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACGATTACTCCCCTG : 1946783 130 : er<->ValHisIlePheIleTyrLeuGlnGlnSerLeuSerLeuIleValGlySer : 146 !! :!! !|||.!!! !!:!:!!!!.|||:!!:!!:!! !! :!! !!!!! laProIlePheIleLeuThrPheValHisGlnAlaIleAlaAlaThrIleCysCys 1946782 : CGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCGACGATATGTTGC : 1946729 147 : IleIleHisValAlaCysAspSerLeuIleTrpGlyLeuLeuIleHisSerCysCy : 165 ! ! !|||.!! ||||||||| ! ||||||||||||:!!! !! !|| ThrSerSerValThrValAspSerLeuTyrThrGlyLeuLeuIleAsnIleTyrCy 1946728 : ACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTGATTAATATCTACTG : 1946672 166 : sGlnLeuGluIleLeuGluAlaArgLeuLysAlaIleLysArgAspAspAspGlnS : 184 ||||!!!|||||||||||| !||||||!:! !:!!|||! !!!:.!.|||.!.| sGlnPheGluIleLeuGluHisArgLeuArgAsnValLysThrGluGlnAspAspS 1946671 : CCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAACTGAGCAGGATGACT : 1946615 185 : erAlaLysSerSerAlaArgTyrHisAsnArgValTyr{Ar} >>>> Target : 197 ||!.!|||..!!!!|||!:!:!!|||:!!|||:!!|||{!:} 32 erValLysGlnCysAlaGlnHisHisAspArgIleTyr{Gl}++ 1946614 : CTGTGAAGCAATGTGCTCAACATCACGATCGTATATAC{CA}gt............ : 1946572 198 : Intron 1 >>>> {g}TyrAlaLysMetIleAsnGlnGluPheLysMetIleIl : 210 5 bp {!}!:!:!!|||! !:!:|||:!!|||||||||:!!|||:! ++{n}PheSerLysLysValAsnGluGluPheLysLeuIleLe 1946571 : .............ag{A}TTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACT : 1946212 211 : ePheValGlnPheThrAlaSerThrLeuValValCysPheSerLeuTyrIleIleA : 229 :.!! !|||||| ! !|||! !! !|||:!!||||||!:!|||||| !!!:. uIleSerGlnPheCysIleSerMetSerValIleCysPheAsnLeuTyrArgMetT 1946211 : GATTTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGA : 1946155 230 : laThrAlaLysAspMetAsnAspArgLeuLeuValIleAlaValTyrGluSerCys : 247 !! ! !||| |||:!: :::...::: ||| !:!!|||...! !||| hrGlnIleLys---MetAspThrLysPheValGluIleIleLeuTyrSerPheCys 1946154 : CACAGATCAAA---ATGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGC : 1946104 248 : MetLeuGlyGlnIlePhePheTyrCysTrpTyrGlyAsnGluValLysLeuLys : 266 ! :!! !|||||||||!:!||||||||||||||||||||||||||| !||| ThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGluValLysAspLys++ 1946103 : ACTATCACGCAGATATTTTACTATTGCTGGTACGGCAACGAAGTGAAAGATAAGgt : 1946047 267 : >>>> Target Intron 2 >>>> SerValGlnLeuSerAspValIlePheGl : 275 80 bp |||:!!|||||| !! !!:!!|||||| ++SerLeuGlnLeuProTyrMetIlePheHi 1946046 : .........................agAGCCTCCAACTTCCATACATGATATTTCA : 1945940 276 : yThrAspTrpMetGlnPheSerArgAspThrLysLysIleLeuSerValIleMetA : 294 !!:!||||||! !...!!.!:!!.!:!!..!! !:! !|||! !:!!!!:|||| sSerAspTrpThrSerLeuAsnAsnAsnValThrArgAlaLeuLeuIleMetMetA 1945939 : CAGCGACTGGACGTCTTTGAACAACAACGTCACCAGAGCACTTTTAATCATGATGA : 1945883 295 : rgArgAlaThrMetSerIleGluPheThrSerValTyrIleValThrMetAsnLeu : 312 ||||||||..!! ! !!|||||||||||||||:!!:!!:!!|||:!!:!!|||||| rgArgAlaValArgProIleGluPheThrSerIleHisValValSerValAsnLeu 1945882 : GACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTC : 1945829 313 : GluSerPheValSer >>>> Target Intron 3 >>>> LeuLeuLysThr : 321 |||||||||:!!:!! 74 bp :!!:!!|||||| GluSerPheMetAla++ ++ValIleLysThr 1945828 : GAATCCTTCATGGCAgt.........................agGTAATAAAAACT : 1945728 322 : SerTyrSerAlaTyrAsnMetLeuGlnSerSer : 332 ||||||||||||!:!||||||:!!|||..!||| SerTyrSerAlaPheAsnMetIleGlnGlnSer 1945727 : TCGTACTCCGCGTTCAACATGATCCAACAAAGC : 1945693 vulgar: gi|805795881|ref|XP_012143130.1| 91 332 . KQ414661.1 1946894 1945692 - 489 M 38 114 G 0 3 M 67 201 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 35 105 G 1 0 M 32 96 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945693 1946894 489 - . gene_id 1 ; sequence gi|805795881|ref|XP_012143130.1| ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1946575 1946894 . - . KQ414661.1 exonerate:protein2genome:local exon 1946575 1946894 . - . insertions 3 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946573 1946574 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946250 1946574 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1946250 1946251 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946048 1946249 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946249 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local splice5 1946046 1946047 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945968 1946047 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1945968 1945969 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945812 1945967 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1945967 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 3 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 3 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 2 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945693 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945693 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945693 1946894 489 - . alignment_id 1 ; Query gi|805795881|ref|XP_012143130.1| ; Align 1946895 92 114 ; Align 1946778 130 201 ; Align 1946249 198 105 ; Align 1946144 234 96 ; Align 1945968 266 156 ; Align 1945738 318 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795881|ref|XP_012143130.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 154 Query range: 265 -> 334 Target range: 1948618 -> 1948278 266 : SerValGlnLeuSerAspValIlePheGlyThrAspTrpMetGlnPheSerArgAs : 284 |||:!!:!!:!!|||:!!:!!|||||| ! !||||||! ! !|||..!!:!! SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 1948618 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 1948564 285 : pThrLysLysIleLeuSerValIleMetArgArgAlaThrMetSerIleGluPheT : 303 !||||||::!! !:!! !..!!!:|||! !||||||:!! ! !!||||||.!!! aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 1948563 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 1948507 304 : hrSerValTyrIleValThrMetAsnLeuGluSerPheValSer >>>> Targe : 318 !|||||| !:!::!!:!!:!!||||||!!:|||||||||:!! leSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 1948506 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.......... : 1948460 319 : t Intron 1 >>>> LeuLeuLysThrSerTyrSerAlaTyrAsnMetLeuGln : 330 133 bp ||||||||||||||||||||||||||||||:!:|||||| ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGln 1948459 : ...............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAA : 1948293 331 : SerSerHisGly : 334 !!.!!.!.||| ArgGlyGluGly 1948292 : CGCGGCGAAGGC : 1948279 vulgar: gi|805795881|ref|XP_012143130.1| 265 334 . KQ414661.1 1948618 1948278 - 154 M 52 156 5 0 2 I 0 129 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948279 1948618 154 - . gene_id 2 ; sequence gi|805795881|ref|XP_012143130.1| ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1948463 1948618 . - . KQ414661.1 exonerate:protein2genome:local exon 1948463 1948618 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1948461 1948462 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1948330 1948462 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1948330 1948331 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1948279 1948329 . - . KQ414661.1 exonerate:protein2genome:local exon 1948279 1948329 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948279 1948618 154 - . alignment_id 2 ; Query gi|805795881|ref|XP_012143130.1| ; Align 1948619 266 156 ; Align 1948330 318 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795867|ref|XP_012143125.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 525 Query range: 125 -> 369 Target range: 1946900 -> 1945689 126 : AlaTyrThrAlaLeuLeuGlyPhePheAlaPheLeuValLeuPheMetThrIleVa : 144 !.!||| !:::|||||| ... ..!|||!!!:!!! ! ! ! :!!:!!:! GlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrValArgSerLeuLe 1946900 : GGCTACTGGAGtttactattaatttctacGTTCTTTATATACGTGAGATCGCTTTT : 1946846 145 : lIleGlyPheAsnLysArgLysLeuValPheArgMetTrpLeuProTyrAsnTyrS : 163 !|||! !|||!:!!!.|||||||||:!!|||||| |||:!!||||||:!!|||| uIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrAspTyrS 1946845 : GATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACGATTACT : 1946789 164 : erSerAlaArgLeuTyrIleLeuThrSerValTyrGluValMetValThrSerTyr : 181 || !!|||! !:!!!:!|||||||||! !|||:!!:!!!.!!!:!.!.!!!!! erProAlaProIlePheIleLeuThrPheValHisGlnAlaIleAlaAlaThrIle 1946788 : CCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCGACGATA : 1946735 182 : GlyValSerValSerIleAlaCysGluCysLeuTyrThrGlyLeuIleLeuHisVa : 200 !! !!!! !|||:!!.!! !!:! !|||||||||||||||:!::!!:!!:! CysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLeuIleAsnIl 1946734 : TGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTGATTAATAT : 1946678 201 : lCysCysGlnPheGluIleLeuGluHisArgPheLysMetLeuAsnThrAsnProV : 219 !! !|||||||||||||||||||||||||||.!.!:!! :!!!!.|||.!.! !! eTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysThrGluGlnA 1946677 : CTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAACTGAGCAGG : 1946621 220 : alTyrThrValAsnGlnCysAlaSerHisHisHisLeuIleTyr{Ly} >>>> T : 234 ! !!:!!|||!!.|||||||||..!|||||| !!! !||||||{:!} spAspSerValLysGlnCysAlaGlnHisHisAspArgIleTyr{Gl}++ 1946620 : ATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTATATAC{CA}gt...... : 1946572 235 : arget Intron 1 >>>> {s}TyrAlaGluAlaValAsnGluGluPheLysGl : 245 325 bp {!}!:!:!!:!! !|||||||||||||||||| ++{n}PheSerLysLysValAsnGluGluPheLysLe 1946571 : ...................ag{A}TTTTCGAAAAAGGTGAACGAAGAATTCAAACT : 1946218 246 : yIleValSerPheGlnPhePheSerSerMetSerMetIleCysLeuThrIleTyrG : 264 !|||:!!! !! !||||||! !! !|||||||||:!!||||||!!!!.!:!!|||! uIleLeuIleSerGlnPheCysIleSerMetSerValIleCysPheAsnLeuTyrA 1946217 : GATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTTCAATCTTTACC : 1946161 265 : lnLeuProTyrAlaGluAsnSerAlaThrPheLeuAlaThrAlaMetPheLeuMet : 282 :!:!! !! ! !:!!! ...... |||::: !:!:!:!! !.!. rgMetThrGlnIleLysMetAspThrLysPheValGluIleIleLeuTyrSerPhe 1946160 : GAATGACACAGATCAAAATGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTC : 1946107 283 : CysValPheLeuGlnIlePheTyrTyrCysLeuCysGlyAsnValValLysAlaLy : 301 |||..!.!! !||||||||||||||||||! !! !||||||! !||||||! !|| CysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGluValLysAspLy 1946106 : TGCACTATCACGCAGATATTTTACTATTGCTGGTACGGCAACGAAGTGAAAGATAA : 1946050 302 : s >>>> Target Intron 2 >>>> SerAlaGluPheProAspGluIlePh : 310 | 80 bp ||| !:!!.!!||| !! !||||| s++ ++SerLeuGlnLeuProTyrMetIlePh 1946049 : Ggt.........................agAGCCTCCAACTTCCATACATGATATT : 1945943 311 : eSerSerGlyTrpProSerTrpAsnAspSerSerLysLysValLeuLeuMetValI : 329 | !|||! !||| !!|||! !|||:!!!:! !! !:!!.!||||||!!::!!! eHisSerAspTrpThrSerLeuAsnAsnAsnValThrArgAlaLeuLeuIleMetM 1945942 : TCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGAGCACTTTTAATCATGA : 1945886 330 : leArgArgSerLysThrProIleGluPheThrSerMetHisIleValThrLeuSer : 347 !:||||||:!! !! !||||||||||||||||||!!:|||:!!|||:!!:!!!:! etArgArgAlaValArgProIleGluPheThrSerIleHisValValSerValAsn 1945885 : TGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCACGTTGTCTCTGTGAAT : 1945832 348 : LeuGluSerPheMetSer >>>> Target Intron 3 >>>> LeuLeuLys : 356 |||||||||||||||:!! 74 bp :!!:!!||| LeuGluSerPheMetAla++ ++ValIleLys 1945831 : CTCGAATCCTTCATGGCAgt.........................agGTAATAAAA : 1945731 357 : ThrSerTyrSerAlaPheAsnLeuMetSerThrThrArg : 369 |||||||||||||||||||||:!!!!:..! !!:!!:! ThrSerTyrSerAlaPheAsnMetIleGlnGlnSerLys 1945730 : ACTTCGTACTCCGCGTTCAACATGATCCAACAAAGCAAA : 1945690 vulgar: gi|805795867|ref|XP_012143125.1| 125 369 . KQ414661.1 1946900 1945689 - 525 M 108 324 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 67 201 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945690 1946900 525 - . gene_id 1 ; sequence gi|805795867|ref|XP_012143125.1| ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1946575 1946900 . - . KQ414661.1 exonerate:protein2genome:local exon 1946575 1946900 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946573 1946574 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946250 1946574 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1946250 1946251 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946048 1946249 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946249 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946046 1946047 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945968 1946047 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1945968 1945969 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945812 1945967 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1945967 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 3 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 3 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 2 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945690 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945690 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945690 1946900 525 - . alignment_id 1 ; Query gi|805795867|ref|XP_012143125.1| ; Align 1946901 126 324 ; Align 1946249 235 201 ; Align 1945968 302 156 ; Align 1945738 354 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795339|ref|XP_012142988.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 166 Query range: 1 -> 64 Target range: 1946236 -> 1946047 2 : ValGlnGluLysPheGlnIleIleMetGlyIleGlnLeuAlaSerSerThrLeuVa : 20 |||.!.|||:!!|||:!!:!:|||:!! ! !|||!!!..!! !|||! !! !|| ValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerVa 1946236 : GTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGT : 1946182 21 : lValCysPheIleLeuTyrLysLeuThrAsnThrProMetAsnSerThrTyrLeuG : 39 |:!!||||||! !||||||::!:!!|||.!.! ! !|||:!:::: ::::::: lIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValG 1946181 : GATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcg : 1946125 40 : lnPheValLeuTyrMetAlaCysMetMetSerGlnIleTyrPheTyrCysTrpTyr : 57 ::...:!!|||||| !|||! !!:!!!||||||!:!!:!|||||||||||| luIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyr 1946124 : aaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTAC : 1946071 58 : GlyAsnGluLeuLysLeuLys : 64 |||||||||:!!||| !||| GlyAsnGluValLysAspLys 1946070 : GGCAACGAAGTGAAAGATAAG : 1946048 vulgar: gi|805795339|ref|XP_012142988.1| 1 64 . KQ414661.1 1946236 1946047 - 166 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946048 1946236 166 - . gene_id 1 ; sequence gi|805795339|ref|XP_012142988.1| ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946048 1946236 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946236 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1946048 1946236 166 - . alignment_id 1 ; Query gi|805795339|ref|XP_012142988.1| ; Align 1946237 2 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795879|ref|XP_012143129.1| PREDICTED: odorant receptor 45a [Megachile rotundata] Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 496 Query range: 121 -> 348 Target range: 1946909 -> 1945695 122 : AsnThrIleThrTyrAlaLeuIleIleAspValTyrValValAlaThrIleIleIl : 140 ||||||||| !||| ! :::::: ::: ..! !! !! ! !:!:! AsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrValAr 1946909 : AACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATATACGTGAG : 1946855 141 : eSerPhePheThrAspTyrArgHisGlyGlyLeuLysPheArgAlaTrpLeuProT : 159 !|||.!!!!.! !|||!:!!!!:!! !! !|||! !||||||||||||:!!|||| gSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProT 1946854 : ATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCT : 1946798 160 : yrAspTyrSerSerProLeuLeuPheThrValThrTyrValHisGlnMetValVal : 177 ||||||||||| !! !!! !:!!|||! !:!!|||!:!||||||||| :!!!.! yrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAlaIleAla 1946797 : ACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCC : 1946744 178 : MetValPheAlaThrAsnPheIleValAlaCysAspSerLeuPheSerGlyLeuLe : 196 !..!.!...! !!.!! ! !|||.!! |||||||||!:!!!!|||||||| AlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLe 1946743 : GCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTT : 1946687 197 : uValAsnIleTyrCysGlnPheGluLeuLeuGluTyrArgLeuLysAsn >>>> : 213 |:!!|||||||||||||||||||||:!!||||||:!!||||||!:!||| uIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsn++ 1946686 : GATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACgt..... : 1946634 214 : Target Intron 1 >>>> ValGluLysPheAlaThrAlaValAsnGluValP : 224 379 bp ..! !:!|||:!!! ! !|||||||||! !| +-ThrCysArgPheSerLysLysValAsnGluGluP 1946633 : ....................aaACTTGCAGATTTTCGAAAAAGGTGAACGAAGAAT : 1946224 225 : heThrAlaIleIleSerIleGlnPheIleValAsnThrPheAlaLeuCysPheAsn : 242 ||! ! !|||:!:! ! !|||||| !:!!!:!! !! !.!:!!||||||||| heLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIleCysPheAsn 1946223 : TCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTTCAAT : 1946170 243 : HisTyrArgLeuSerGlnLeuGluPheGlyAlaLysPheGlyGluAlaAlaAlaPh : 261 ! !||||||:!!!!!|||:!!:!!.!.! ...|||||| ||| ! !!: LeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIleIleLeuTy 1946169 : CTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaatcaTACTCTA : 1946113 262 : eMetPheCysValLeuAlaGlnIlePheTyrTyrCysTrpTyrGlyAsnGluValL : 280 ! ||||||..!:!!.!!||||||||||||||||||||||||||||||||||||| rSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGluValL 1946112 : CTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGGCAACGAAGTGA : 1946056 281 : ysLeuLys >>>> Target Intron 2 >>>> SerLeuThrIleValAspV : 289 || !||| 80 bp |||||| !:!! ! !!: ysAspLys++ ++SerLeuGlnLeuProTyrM 1946055 : AAGATAAGgt.........................agAGCCTCCAACTTCCATACA : 1945949 290 : alAlaLeuAspSerThrLeuMetSerLeuAspAsnSerThrLysLysMetPheLeu : 307 !! !!!! !!||| !! !! !||||||:!!|||!:!..!! !:! .!!||| etIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArgAlaLeuLeu 1945948 : TGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGAGCACTTTTA : 1945895 308 : ThrIleThrMetArgAlaMetGluProIleGlnPheThrSerIleHisIleValSe : 326 ! !!!:! !! ||||||:!!..!||||||:!!|||||||||||||||:!!||||| IleMetMetArgArgAlaValArgProIleGluPheThrSerIleHisValValSe 1945894 : ATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCACGTTGTCTC : 1945838 327 : rMetAsnLeuGluSerPheIleThr >>>> Target Intron 3 >>>> Le : 335 |:!!|||||||||||||||!!:.!! 74 bp :! rValAsnLeuGluSerPheMetAla++ ++Va 1945837 : TGTGAATCTCGAATCCTTCATGGCAgt.........................agGT : 1945737 336 : uValLysThrSerTyrSerAlaTyrThrMetLeuGlnGln : 348 !:!!||||||||||||||||||!:!!.!|||:!!|||||| lIleLysThrSerTyrSerAlaPheAsnMetIleGlnGln 1945736 : AATAAAAACTTCGTACTCCGCGTTCAACATGATCCAACAA : 1945696 vulgar: gi|805795879|ref|XP_012143129.1| 121 348 . KQ414661.1 1946909 1945695 - 496 M 91 273 5 0 2 I 0 375 3 0 2 M 70 210 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945696 1946909 496 - . gene_id 1 ; sequence gi|805795879|ref|XP_012143129.1| ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1946637 1946909 . - . KQ414661.1 exonerate:protein2genome:local exon 1946637 1946909 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946635 1946636 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946258 1946636 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1946258 1946259 . - . intron_id 0 ; splice_site "AA" KQ414661.1 exonerate:protein2genome:local cds 1946048 1946257 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946257 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946046 1946047 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945968 1946047 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1945968 1945969 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945812 1945967 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1945967 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 3 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 3 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 2 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945696 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945696 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945696 1946909 496 - . alignment_id 1 ; Query gi|805795879|ref|XP_012143129.1| ; Align 1946910 122 273 ; Align 1946258 213 210 ; Align 1945968 283 156 ; Align 1945738 335 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795879|ref|XP_012143129.1| PREDICTED: odorant receptor 45a [Megachile rotundata] Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 282 -> 348 Target range: 1948618 -> 1948287 283 : SerLeuThrIleValAspValAlaLeuAspSerThrLeuMetSerLeuAspAsnSe : 301 |||||| !||| !:!!:!! !!!! !! ! !! !! !!!!!|||!!.:! SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 1948618 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 1948564 302 : rThrLysLysMetPheLeuThrIleThrMetArgAlaMetGluProIleGlnPheT : 320 !||||||::!! .!.||||||!!:! !||||||||| !..!||||||:!!.!!! aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 1948563 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 1948507 321 : hrSerIleHisIleValSerMetAsnLeuGluSerPheIleThr >>>> Targe : 335 !|||:!!!.!:!::!!|||:!!||||||!!:||||||:!!.!! leSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 1948506 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.......... : 1948460 336 : t Intron 1 >>>> LeuValLysThrSerTyrSerAlaTyrThrMetLeuGln : 347 133 bp |||:!!|||||||||||||||||||||!.!:!:|||||| ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGln 1948459 : ...............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAA : 1948293 348 : Gln : 348 !:: Arg 1948292 : CGC : 1948288 vulgar: gi|805795879|ref|XP_012143129.1| 282 348 . KQ414661.1 1948618 1948287 - 123 M 52 156 5 0 2 I 0 129 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948288 1948618 123 - . gene_id 2 ; sequence gi|805795879|ref|XP_012143129.1| ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1948463 1948618 . - . KQ414661.1 exonerate:protein2genome:local exon 1948463 1948618 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1948461 1948462 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1948330 1948462 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1948330 1948331 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1948288 1948329 . - . KQ414661.1 exonerate:protein2genome:local exon 1948288 1948329 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948288 1948618 123 - . alignment_id 2 ; Query gi|805795879|ref|XP_012143129.1| ; Align 1948619 283 156 ; Align 1948330 335 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795873|ref|XP_012143127.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 158 Query range: 260 -> 328 Target range: 1945967 -> 1945689 261 : SerIleGluPheAlaAspGluIlePheTyrSerAspTrpValSerTrpGlyAsnGl : 279 |||:!!:!!.!! !! !! !||||||:!!|||||||||..!|||! !..!|||.! SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAs 1945967 : AGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAA : 1945913 280 : uAlaLysLysValPheLeuMetValLeuThrArgSerAlaGlnProIleGluPheS : 298 .!.!! !:!!.!.!!|||!!::!!:!!! !|||:!!!.!::!||||||||||||! nValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheT 1945912 : CGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCA : 1945856 299 : erCysIleSerIleLeuProIleAsnLeuGluSerPheMetLys >>>> Targe : 313 !! !!||| !:!!:!! !!:!:|||||||||||||||||| ! hrSerIleHisValValSerValAsnLeuGluSerPheMetAla++ 1945855 : CCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt.......... : 1945809 314 : t Intron 1 >>>> LeuLeuLysThrSerTyrSerAlaPheAsnIleMetGln : 325 74 bp :!!:!!||||||||||||||||||||||||!!:!!:||| ++ValIleLysThrSerTyrSerAlaPheAsnMetIleGln 1945808 : ...............agGTAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAA : 1945701 326 : GlnSerArg : 328 ||||||!:! GlnSerLys 1945700 : CAAAGCAAA : 1945690 vulgar: gi|805795873|ref|XP_012143127.1| 260 328 . KQ414661.1 1945967 1945689 - 158 M 52 156 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945690 1945967 158 - . gene_id 1 ; sequence gi|805795873|ref|XP_012143127.1| ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1945812 1945967 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1945967 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945690 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945690 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945690 1945967 158 - . alignment_id 1 ; Query gi|805795873|ref|XP_012143127.1| ; Align 1945968 261 156 ; Align 1945738 313 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795873|ref|XP_012143127.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 143 Query range: 0 -> 81 Target range: 1947262 -> 1947019 1 : MetMetTyrSerLeuPheValAlaGlnSerLeuAspIleAlaPheHisValThrAs : 19 :::::: !|||||| !!:!!:!!|||! !||||||:!!|||.!!:!!||| !!: LeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIleAsnValGluSe 1947262 : cttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCAACGTGGAGAG : 1947208 20 : nLeuAspGluPheSerAspAsnPheAlaThrThrSerLeuLeuLeuValAspCysI : 38 !! !|||!!:|||||||||||||||:::...|||:!!:!!:!!!!!:!! !! . rGlnAspAspPheSerAspAsnPheSerValThrAlaValValPheLeuThrTrpP 1947207 : CCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTTCTCACGTGGT : 1947151 39 : leLysHisGlyValLeuSerMetArgArgAspSerLeuIleGluLeuThrAspMet : 56 !!|||! !..!:!!||| !!!:||||||! !:!!!!||| |||! !|||! ! heLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuIleAspThr 1947150 : TCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGATCGATACG : 1947097 57 : LeuSerLysAsnLeuPheAlaSerValThrLysArgGluIleLysIleArgGluAr : 75 |||..!!!.!!.! !|||:!! !!||| !! !..!|||! !:!!||||||! !!: LeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIleArgAlaLy 1947096 : CTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATTAGAGCGAA : 1947040 76 : gTyrAspLysLeuValGlu : 81 !!:!!!:|||:!!..!||| sPheGluLysIleThrGlu 1947039 : ATTCGAGAAGATCACCGAG : 1947020 vulgar: gi|805795873|ref|XP_012143127.1| 0 81 . KQ414661.1 1947262 1947019 - 143 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1947020 1947262 143 - . gene_id 2 ; sequence gi|805795873|ref|XP_012143127.1| ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1947020 1947262 . - . KQ414661.1 exonerate:protein2genome:local exon 1947020 1947262 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1947020 1947262 143 - . alignment_id 2 ; Query gi|805795873|ref|XP_012143127.1| ; Align 1947263 1 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795873|ref|XP_012143127.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 260 -> 326 Target range: 1948618 -> 1948287 261 : SerIleGluPheAlaAspGluIlePheTyrSerAspTrpValSerTrpGlyAsnGl : 279 |||:!!|||.!!:!!:!! !||||||:!! !||||||..! !!!::! !!!.! SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 1948618 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 1948564 280 : uAlaLysLysValPheLeuMetValLeuThrArgSerAlaGlnProIleGluPheS : 298 .!!|||::! !.!.|||! :!!:!!! !|||:!!:!!..!|||||||||.!!! aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 1948563 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 1948507 299 : erCysIleSerIleLeuProIleAsnLeuGluSerPheMetLys >>>> Targe : 313 ! !!:!! !!:!:||| !!:!:||||||!!:||||||:!: leSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 1948506 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.......... : 1948460 314 : t Intron 1 >>>> LeuLeuLysThrSerTyrSerAlaPheAsnIleMetGln : 325 133 bp ||||||||||||||||||||||||!:!|||:!!:!:||| ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGln 1948459 : ...............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAA : 1948293 326 : Gln : 326 !:: Arg 1948292 : CGC : 1948288 vulgar: gi|805795873|ref|XP_012143127.1| 260 326 . KQ414661.1 1948618 1948287 - 132 M 52 156 5 0 2 I 0 129 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948288 1948618 132 - . gene_id 3 ; sequence gi|805795873|ref|XP_012143127.1| ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1948463 1948618 . - . KQ414661.1 exonerate:protein2genome:local exon 1948463 1948618 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1948461 1948462 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1948330 1948462 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1948330 1948331 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1948288 1948329 . - . KQ414661.1 exonerate:protein2genome:local exon 1948288 1948329 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948288 1948618 132 - . alignment_id 3 ; Query gi|805795873|ref|XP_012143127.1| ; Align 1948619 261 156 ; Align 1948330 313 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805809810|ref|XP_003705978.2| PREDICTED: putative odorant receptor 92a [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 346 -> 399 Target range: 1395323 -> 1395482 347 : SerGlnAlaIleAlaValAlaAlaTyrAsnSerProTrpTyrArgTrpSerAlaSe : 365 |||! !:!!|||::! !|||||||||!:!||||||||||||! ! !..! !!.. SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 366 : rSerArgThrProIleAlaValLeuLeuValArgAlaGlnLysProAlaArgLeuT : 384 !..!||| ! !||| !:!!|||:!!:!!|||:!!|||!:!! ! !! !:!!| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 385 : hrAlaGlyLysPheValValLeuSerLeuAspThrPheGlySerMet : 399 ||||||||||||||:!!! !|||||||||!!: !|||!.!!:!:!: hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnVal 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTA : 1395482 vulgar: gi|805809810|ref|XP_003705978.2| 346 399 . KQ414716.1 1395323 1395482 + 113 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395482 113 + . gene_id 1 ; sequence gi|805809810|ref|XP_003705978.2| ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395482 113 + . alignment_id 1 ; Query gi|805809810|ref|XP_003705978.2| ; Align 1395324 347 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819492|ref|XP_012149880.1| PREDICTED: odorant receptor 67c [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 628 Query range: 12 -> 290 Target range: 1386423 -> 1387955 13 : AsnLeuGluAlaMetIleAspLysAlaThrLeuSerTyrArgIleThrArgIleMe : 31 ||| ... |||! !|||||||||! !||||||! !||||||:::......:: AsnLysArgIleMetThrAspLysAlaMetLeuSerSerArgIleSerAsnPheLe 1386424 : aataaacgaataatgACAGATAAAGCTATGTTGTCTTCTCGtatctcaaatttttt : 1386478 32 : tLeuValSerPheLeuSerSerSerIleLeuTyrThrLeuGlyValPhePheGlyS : 50 :::: !|||! !! !!!!! !:!!:!!|||:!! ! !!.!.!. ! !! uIleGlyTyrPheSerIleThrPheLeuValTyrSerGlyLeuAlaLeuValLeuP 1386479 : aattggctATTTTTCGATCACGTTCCTTGTATATTCAGGACTTGCTCTAGTATTAT : 1386535 51 : erAspAsnAspAspGlyThrSerAsnProAsnGluArgLysPheValLeuArgMet : 68 !|||.!.|||.!...! ! !! ! !!!..:::|||||||||::::::|||||| heAspGluAspGlnAsnGlyProValSerLysGlnArgLysPheLeuIleArgMet 1386536 : TTGATGAAGATCAGAATGGACCGGTTTCCAaacaaaggaaatttttaattagaatg : 1386589 69 : GluPheProPheGluAlaThrIleSerProIleTyrGluValIleValIleValGl : 87 |||||||||||||||||||||:!!|||||| ||||||:::|||::::::||||| GluPheProPheGluAlaThrValSerProArgTyrGluIleIleLeuValValGl 1386590 : gAATTTCCTTTCGAAGCTACAGTCTCTCCACgttatgaaattattctagttgtaca : 1386646 88 : nIleIleAlaGlnAlaThrPheAlaValMetAlaGlyMetLeuMetThrLeuAsnA : 106 |...||| :::||| !.!.!.! ! |||!.!! ! !!!:.!!|||! !| nPheIlePheGluAlaPheIleValTyrGlyAlaAlaThrSerIleAlaLeuIleA 1386647 : atttatattcgaagcATTTATAGTTTATGGAGCAGCTACATCGATAGCCCTAATTG : 1386703 107 : laThrPhe >>>> Target Intron 1 >>>> ValLeuHisLeuValSerG : 115 ||..!.!. 399 bp :!!||||||:!!! !.!!| laValLeu++ ++IleLeuHisValGlyGlyG 1386704 : CAGTACTAgt.........................agATATTACATGTTGGTGGTC : 1387129 116 : lnValAspIleIleCysGluArgLeuThrGlnIleLeuAsnAspAsnAsnGluGlu : 133 ||:!!|||:!!:!:|||:!!!.!:!!! !.!.|||! !..!:!!:!!.!.:!!:!! lnIleAspLeuLeuCysGlnAsnMetArgAspIleSerArgAsnHisGluLysLys 1387130 : AGATCGATTTATTGTGTCAAAACATGAGAGACATTTCTCGTAATCATGAGAAGAAA : 1387183 134 : LysSerArgValGlyIleIleLysLysIleIleLeuLysHisGlnArgIleLeuAs : 152 ! !!!:! ! !! !|||||| ! :!!:!!:!!!:!||||||||||||:!! ValProGlnLysLeuThrIleLysAspValValValArgHisGlnArgIleIleAr 1387184 : GTACCGCAAAAACTGACAATAAAGGATGTCGTTGTTAGGCATCAACGAATTATACG : 1387240 153 : pLeuCysAsnAsnValAspTyrValLeuThrPheIleSerLeuIleGlnPhePheL : 171 |||! !!!.|||:!!!!: |||!!!|||!:!||||||||| ||||||... gLeuSerLysAsnIleGluThrValPheThrTyrIleSerLeuCysGlnPheLeuS 1387241 : ACTGTCTAAAAATATCGAGACAGTTTTTACTTATATATCATTATgccaatttttat : 1387297 172 : euAsnThrValValIleCysPheLeuSerPheIleLeuValThr >>>> Targe : 186 ||| :!!||||||||||||:!!||||||:!!||||||||| erAsnMetLeuValIleCysPheIleSerPheValLeuValThr++ 1387298 : cgaatatgcTGGTTATCTGTTTCATAAGCTTCGTTTTGGTAACCgt.......... : 1387344 187 : t Intron 2 >>>> SerLeuAsnThrAspGluAlaAlaIleIleIleSerLys : 198 85 bp ||||||||||||!!::!!.!!.!! !:!!||| !||| ++SerLeuAsnThrGluGlnThrThrGlyLeuIleLeuLys 1387345 : ...............agTCCTTGAACACGGAACAGACAACTGGATTAATACTGAAA : 1387463 199 : CysPheProTyrPheValValIleHisLeuGluAlaLeuIleLeuCysTyrThrGl : 217 ||||||||||||!:!|||!.!:!!:!!! !||||||!!!||||||||||||||||| CysPheProTyrTyrValAlaValAsnCysGluAlaPheIleLeuCysTyrThrGl 1387464 : TGTTTTCCCTATTACGTTGCTGTTAATTGTGAAGCATTCATTTTATGTTATACCGG : 1387520 218 : yGluTyrLeuThrThrLys >>>> Target Intron 3 >>>> SerLysSe : 226 |||||||||||||:!!||| 79 bp |||:!! ! yGluTyrLeuThrSerLys++ ++SerGluAr 1387521 : AGAATATCTAACCTCTAAGgt.........................agagtgAACG : 1387626 227 : rIleSerTrpAlaAlaTyrAsnSerAsnTrpTyrGlnLeuSerIleArgGluCysA : 245 !|||!!! :!:...|||||| ||||||.!.|||!.! !||||||..!| gIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProArgGluAlaA 1387627 : TATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCGAGAAGCTC : 1387683 246 : rgAlaLeuLeuLeuLeuIleLeuArgSerGlnArgProMetThrLeuThrIleGly : 263 || :::||||||:::|||||||||||||||!:! !:!:! !|||||| ||| rgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuThrAlaGly 1387684 : gtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCACTGCGGGC : 1387737 264 : LysTyrIleAsnLeuSerLeuGluThrPheAlaAsn >>>> Target Intron : 276 |||!:!:!:||||||||||||! .!!||||||||| 135 bp LysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387738 : AAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt.................. : 1387778 277 : 4 >>>> MetLeuLysThrSerAlaSerTyrValSerValLeuTyrAlaMet : 290 |||||||||.!!||||||||||||||||||||||||:!!|||||| ++MetLeuLysAlaSerAlaSerTyrValSerValLeuHisAlaMet 1387779 : .......agatgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTTGCATGCAATG : 1387955 vulgar: gi|805819492|ref|XP_012149880.1| 12 290 . KQ414716.1 1386423 1387955 + 628 M 96 288 5 0 2 I 0 395 3 0 2 M 77 231 5 0 2 I 0 81 3 0 2 M 38 114 5 0 2 I 0 75 3 0 2 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1386424 1387955 628 + . gene_id 1 ; sequence gi|805819492|ref|XP_012149880.1| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1386424 1386711 . + . KQ414716.1 exonerate:protein2genome:local exon 1386424 1386711 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1386712 1386713 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1386712 1387110 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387109 1387110 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387111 1387341 . + . KQ414716.1 exonerate:protein2genome:local exon 1387111 1387341 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387342 1387343 . + . intron_id 2 ; splice_site "Gt" KQ414716.1 exonerate:protein2genome:local intron 1387342 1387426 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1387425 1387426 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387427 1387540 . + . KQ414716.1 exonerate:protein2genome:local exon 1387427 1387540 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387541 1387542 . + . intron_id 3 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387541 1387619 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1387618 1387619 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 4 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 4 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 3 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1386424 1387955 628 + . alignment_id 1 ; Query gi|805819492|ref|XP_012149880.1| ; Align 1386424 13 288 ; Align 1387111 109 231 ; Align 1387427 186 114 ; Align 1387620 224 156 ; Align 1387911 276 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819492|ref|XP_012149880.1| PREDICTED: odorant receptor 67c [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 222 -> 290 Target range: 1409046 -> 1409528 223 : LysSerLysSerIleSerTrpAlaAlaTyrAsnSerAsnTrpTyrGlnLeuSerIl : 241 :::|||||| |||... .!!||||||.!.! ! !||||||.!.:!! ! GlnSerLysLeuIleGlyAspThrAlaTyrGluPheLeuTrpTyrAsnMetHisSe 1409047 : cagagtaaactgattggagACACGGCGTATGAATTTCTTTGGTATAATATGCATTC : 1409101 242 : eArgGluCysArgAlaLeuLeuLeuLeuIleLeuArgSerGlnArgProMetThrL : 260 !:!||| !!||| !:!!||||||:!!|||||||||||||||!:! !.!.|||. rLysGluSerArgLeuMetLeuLeuValIleLeuArgSerGlnLysGlyPheThrP 1409102 : GAAGGAAAGCCGACTTATGTTGCTTGTAATACTACGATCACAGAAAGGATTTACtt : 1409158 261 : euThrIleGlyLysTyrIleAsnLeuSerLeuGluThrPheAlaAsn >>>> Ta : 276 ..|||...||||||::: :::||||||:!!|||!:!||||||..! heThrPheGlyLysPheAlaSerLeuSerMetGluSerPheAlaGly++ 1409159 : tcacttttggaaaatttgcaagtCTTTCCATGGAAAGTTTTGCAGGCgt....... : 1409208 277 : rget Intron 1 >>>> MetLeuLysThrSerAlaSerTyrValSerValLeu : 287 278 bp ::::!!|||.!!||||||||||||:!!||||||||| ++IleMetLysAlaSerAlaSerTyrIleSerValLeu 1409209 : ..................agattATGAAAGCTTCTGCATCGTATATATCCGTATTG : 1409517 288 : TyrAlaMet : 290 !|||||| LeuAlaMet 1409518 : CTCGCAATG : 1409528 vulgar: gi|805819492|ref|XP_012149880.1| 222 290 . KQ414716.1 1409046 1409528 + 158 M 53 159 5 0 2 I 0 274 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1409047 1409528 158 + . gene_id 2 ; sequence gi|805819492|ref|XP_012149880.1| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1409047 1409205 . + . KQ414716.1 exonerate:protein2genome:local exon 1409047 1409205 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1409206 1409207 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1409206 1409483 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1409482 1409483 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409484 1409528 . + . KQ414716.1 exonerate:protein2genome:local exon 1409484 1409528 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1409047 1409528 158 + . alignment_id 2 ; Query gi|805819492|ref|XP_012149880.1| ; Align 1409047 223 159 ; Align 1409484 276 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819492|ref|XP_012149880.1| PREDICTED: odorant receptor 67c [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 223 -> 290 Target range: 1402435 -> 1402805 224 : SerLysSerIleSerTrpAlaAlaTyrAsnSerAsnTrpTyrGlnLeuSerIleAr : 242 |||:!! !|||.!! .!!||||||.!.! ! !||||||.!.||| !! !! SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerTh 1402436 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAAC : 1402490 243 : gGluCysArgAlaLeuLeuLeuLeuIleLeuArgSerGlnArgProMetThrLeuT : 261 !||| !!!:! !|||:!!! !:!!|||||||||||||||!:! !.!.|||!..| rGluSerGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheT 1402491 : TGAAAGCCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACGTtta : 1402547 262 : hrIleGlyLysTyrIleAsnLeuSerLeuGluThrPheAlaAsn >>>> Targe : 276 ||...||||||::: :::||||||||||||!:!|||.!! ! hrPheGlyLysPheSerSerLeuSerLeuGluSerPheThrAla++ 1402548 : cttttggaaaattttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.......... : 1402594 277 : t Intron 1 >>>> MetLeuLysThrSerAlaSerTyrValSerValLeuTyr : 288 169 bp !!::!!|||..!||||||||||||:!!||||||||| ! ++IleMetLysValSerAlaSerTyrIleSerValLeuLeu 1402595 : ...............agATCATGAAAGTCTCAGCATCATATATATCAGTACTTCTT : 1402797 289 : AlaMet : 290 |||:!! AlaVal 1402798 : GCAGTG : 1402805 vulgar: gi|805819492|ref|XP_012149880.1| 223 290 . KQ414716.1 1402435 1402805 + 133 M 52 156 5 0 2 I 0 165 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1402436 1402805 133 + . gene_id 3 ; sequence gi|805819492|ref|XP_012149880.1| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1402436 1402591 . + . KQ414716.1 exonerate:protein2genome:local exon 1402436 1402591 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1402592 1402593 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1402592 1402760 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1402759 1402760 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402761 1402805 . + . KQ414716.1 exonerate:protein2genome:local exon 1402761 1402805 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1402436 1402805 133 + . alignment_id 3 ; Query gi|805819492|ref|XP_012149880.1| ; Align 1402436 224 156 ; Align 1402761 276 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819492|ref|XP_012149880.1| PREDICTED: odorant receptor 67c [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 99 -> 206 Target range: 1394134 -> 1394455 100 : MetLeuMetThrLeuAsnAlaThrPheValLeuHisLeuValSerGlnValAspIl : 118 :!:! ! |||:!!|||! !! !! :!!!!!|||:!!! !.!!|||:!!!!:!! LeuTyrTyrThrIleAsnAspIle***IlePheHisIleGlyGlyGlnIleGluMe 1394135 : CTCTATTATACAATAAATGATATTTAGATATTTCATATTGGAGGACAGATAGAAAT : 1394189 119 : eIleCysGluArgLeuThrGlnIleLeuAsnAspAsnAsnGluGluLysSerArgV : 137 ::!: :!! !||||||...||| :!!.!.:!!.!.!:!! ! ! tLeuGlnLysAlaLeuThrAsnIleSerIleLysAspGluLysHisArgLeuSerA 1394190 : GTTGCAGAAAGCTCtgacaaatatttctattaaagATGAGAAACACAGATTATCGA : 1394246 138 : alGlyIleIleLysLysIleIleLeuLysHisGlnArgIleLeuAspLeuCysAsn : 155 !..!! !! !|||..!:!!|||! !!:!|||!!.||||||:!! ! !! :!! rgAsnThrThrLysSerLeuIleHisArgHisHisArgIleIleIleAsnSerAsp 1394247 : GAAACACCACCAAATCATTAATTCACAGACATCATCGAATCATTATTAATTCGGAC : 1394300 156 : AsnValAspTyrValLeuThrPheIleSerLeuIleGlnPhePheLeuAsnThrVa : 174 ::!:!!!!: !:!!!!!:!!!:!|||:!!|||!!:|||!::!!.! !||||||:! SerIleGluSerLeuPheSerTyrIleAlaLeuMetGlnTrpLeuCysAsnThrLe 1394301 : TCTATCGAGAGTCTTTTTTCATACATTGCTTTGATGCAGTGGTTATGTAACACGCT : 1394357 175 : lValIleCysPheLeuSerPheIleLeuValThrSerLeuAsnThrAspGluAlaA : 193 !|||||||||! !:!!.!!|||:!!:!!|||! ! ! ||| ||| uValIleCysCysIleGlyPheLeuIleValIleValSerAsnIleTyrGluTyrT 1394358 : CGTTATATGTTGCATAGGATTCTTAATAGTAATTGTAAGtaatatttacgaatatt : 1394414 194 : laIleIleIleSerLysCysPheProTyrPheValValIle : 206 |||...:::::: ||| ::: !!:!!||| yrIlePheValAsnPhe***PheLysPhe***PheIleIle 1394415 : acattttcgttaatttttaatttaagttttaGTTTATAATT : 1394455 vulgar: gi|805819492|ref|XP_012149880.1| 99 206 . KQ414716.1 1394134 1394455 + 128 M 107 321 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394135 1394455 128 + . gene_id 4 ; sequence gi|805819492|ref|XP_012149880.1| ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1394135 1394455 . + . KQ414716.1 exonerate:protein2genome:local exon 1394135 1394455 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394135 1394455 128 + . alignment_id 4 ; Query gi|805819492|ref|XP_012149880.1| ; Align 1394135 100 321 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795911|ref|XP_012143140.1| PREDICTED: odorant receptor 49a-like [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 67 -> 153 Target range: 20583 -> 20325 68 : SerSerIleTrpIlePheThrIlePhePheLeuSerMetProLeuCysProIlePheLeu : 87 :!! !:!:!:::!! !.!! !.!.||||||!!!:!!|||!!!...||||||.!!||| AlaHisLeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIleLeu 20583 : GCGCATTTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTG : 20526 88 : AspPheIleLeuProLeuAsnGluThrArgAlaArgGluProLeuPheLysLeuAsnTyr : 107 |||.!! ! !|||||||||:!!|||||| !|||! ! !:!!!:! ! ! !!||| AspIleTyrAlaProLeuAsnLysThrArgLysArgValPheValTyrProAlaTyrTyr 20525 : GACATTTACGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTAC : 20466 108 : MetValAspMetArgAspHisPhePheIleGluTyrPheHisSerAlaPheSerSerIle : 127 !:!!||| ..!.!.:!!!:!.!.||| ! .!.|||! ! !||| ! !||| TrpMetAspProGluGlnTyrTyrMetIleMetIleIleHisIleMetPheValValIle 20465 : TGGATGGATCCTGAGCAATACTACATGATAATGATAATACACATAATGTTCGTGGTGATC : 20406 128 : ValValValLeuIleThrAlaThrPheAspSerLeuTyrMetValIleIleHisTyrGly : 147 :!!||| !:!!||| !..!.!!! !|||! ! !|||:!! ! !:!:!!.:!!!.! MetValCysValIlePheCysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAla 20405 : ATGGTCTGTGTCATATTCTGTGCTTGCGACATGAACTACGTGTACGCTGTGCAGCACGCA : 20346 148 : CysGlyLeuPheAlaLeu : 153 |||||||||!!.|||:!! CysGlyLeuLeuAlaVal 20345 : TGCGGCTTATTGGCTGTC : 20326 vulgar: gi|805795911|ref|XP_012143140.1| 67 153 . KQ414772.1 20583 20325 - 132 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20583 132 - . gene_id 1 ; sequence gi|805795911|ref|XP_012143140.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20583 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20583 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20326 20583 132 - . alignment_id 1 ; Query gi|805795911|ref|XP_012143140.1| ; Align 20584 68 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795911|ref|XP_012143140.1| PREDICTED: odorant receptor 49a-like [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 59 -> 155 Target range: 18090 -> 17802 60 : SerGlnMetGlySerMetPheArgSerSerIleTrpIlePheThrIlePhePheLeuSer : 79 :!! :!:! ! !!!!:|||! ! !!:! !::|||! !:!!.!!!!.|||:!!..! AlaThrLeuAspArgIlePheProValAsnAlaTyrIleCysSerPheLeuPheIleGln 18090 : GCAACTCTCGATCGGATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAA : 18033 80 : MetProLeuCysProIlePheLeuAspPheIleLeuProLeuAsnGluThrArgAlaArg : 99 :!!|||! !! !! !!!.:!!:!!! ! ! !!! !||| !|||! !::! ! ValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeu 18032 : GTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTG : 17973 100 : GluProLeuPheLysLeuAsnTyrMetValAspMetArgAspHisPhePheIleGluTyr : 119 :!! !:!!.!. ! !!|||.!.|||||| !!!::!!!:!!:! ! GlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIle 17972 : CAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATA : 17913 120 : PheHisSerAlaPheSerSerIleValValValLeuIleThrAlaThrPheAspSerLeu : 139 .!!|||.!!.!!! !!!!! !:!::!!||||||:!!:!: !..!.!!! !|||!!! ! LeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCysAspThrSer 17912 : CTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGT : 17853 140 : TyrMetValIleIleHisTyrGlyCysGlyLeuPheAlaLeuCysGly : 155 |||||||||:!::!:!!.:!! !|||||||||||||||:!!..!||| TyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly 17852 : TACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 17803 vulgar: gi|805795911|ref|XP_012143140.1| 59 155 . KQ414772.1 18090 17802 - 105 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17803 18090 105 - . gene_id 2 ; sequence gi|805795911|ref|XP_012143140.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17803 18090 . - . KQ414772.1 exonerate:protein2genome:local exon 17803 18090 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17803 18090 105 - . alignment_id 2 ; Query gi|805795911|ref|XP_012143140.1| ; Align 18091 60 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805809121|ref|XP_012146759.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 95 -> 203 Target range: 1344660 -> 1344981 96 : GlyAsnGlyThrGlyMetTyrArgLeuProPheArgIleHisSerPhePheAspTy : 114 .!!||| !!||| ! |||..!||||||.!.!:!:!::!! !.!.!:!!!: SerAsnCysThrLeuProTyrGluLeuProMetLysValAsnHisLeuTyrGluVa 1344661 : AGTAACTGTACTCTTCCTTACGAGCTACCAATGAAAGTGAACCACCTGTACGAAGT : 1344715 115 : rGluAspAsnPheLysTyrTyrMetLeuLeuTyrAlaTyrGluLeuProIleMetC : 133 !!!: ! !||| !:!!!!!! ! ! !!:!! !! ! !!! !|||! lThrGluValArgThrTyrAlaLeuPheCysValTyrPheValProThrSerMetL 1344716 : GACAGAGGTGCGGACGTACGCTTTGTTCTGCGTTTACTTCGTACCGACGAGCATGT : 1344772 134 : ysIleGlyIlePheHisIleThrSerIleSerLeuLeuLeuSerLeuValLeuHis : 151 :!! !||| ! ! ! !:!! !|||||||||:!!!!!|||..!!!!||| euLeuThrIleGlyAlaThrGlyAlaAspSerLeuLeuValThrLeuThrPheHis 1344773 : TACTAACAATCGGTGCAACTGGCGCCGACAGTCTTCTAGTCACCTTGACTTTCCAT : 1344826 152 : ValCysGlyLysPheSerIleLeuSerTyrArgIleGlnAsnIleValGluAspSe : 170 :!!|||.!!:!!||||||||||||||| |||::::::||||||! !! !!: ! LeuCysSerGlnPheSerIleLeuSerSerArgValLysAsnIleAspValGluPr 1344827 : CTTTGCAGTCAATTTTCGATcctgtcgagccgtgtaaaaAATATCGACGTCGAGCC : 1344883 171 : rGluAsnGlyTyrGlnSerLysValLysGluLeuValGluArgHisValGluLeuI : 189 !:!!!!. ||| !!:!!:!!|||! !|||||||||||||||..!||||||: oGlnLys---TyrPheProGlnMetLysAlaLeuValGluArgHisThrGluLeuL 1344884 : GCAAAAG---TATTTCCCACAAATGAAAGCACTCGTTGAACGGCACACCGAACTTC : 1344937 190 : leMetThrAlaAsnAlaLeuAsnSerAlaLeuGlnLeuIleLeu : 203 !! ! !! !!.! !!:!!...!:!|||! ! !|||.!!||| euArg***GluThrProIleArgAsnAlaArgIleLeuPheLeu 1344938 : TACGGTGAGAAACTCCAATACGAAACGCACGCATACTTTTCCTC : 1344981 vulgar: gi|805809121|ref|XP_012146759.1| 95 203 . KQ414782.1 1344660 1344981 + 124 M 77 231 G 1 0 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1344661 1344981 124 + . gene_id 1 ; sequence gi|805809121|ref|XP_012146759.1| ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1344661 1344981 . + . KQ414782.1 exonerate:protein2genome:local exon 1344661 1344981 . + . insertions 0 ; deletions 1 KQ414782.1 exonerate:protein2genome:local similarity 1344661 1344981 124 + . alignment_id 1 ; Query gi|805809121|ref|XP_012146759.1| ; Align 1344661 96 231 ; Align 1344892 174 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819492|ref|XP_012149880.1| PREDICTED: odorant receptor 67c [Megachile rotundata] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 223 -> 273 Target range: 1345564 -> 1345714 224 : SerLysSerIleSerTrpAlaAlaTyrAsnSerAsnTrpTyrGlnLeuSerIleAr : 242 |||.....!!!:..! !|||..!||| !||||||||||||.!.||| !! !!: SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 243 : gGluCysArgAlaLeuLeuLeuLeuIleLeuArgSerGlnArgProMetThrLeuT : 261 ! ! |||:!!|||:!!!!!! !||| !|||||||||!:!||| ! !|||| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 262 : hrIleGlyLysTyrIleAsnLeuSerLeuGluThrPhe : 273 || !||||||!:! ! !!!||||||||||||||| hrAlaGlyLysPheTyrValPheSerLeuGluThrPhe 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTC : 1345714 vulgar: gi|805819492|ref|XP_012149880.1| 223 273 . KQ414782.1 1345564 1345714 + 114 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345714 114 + . gene_id 1 ; sequence gi|805819492|ref|XP_012149880.1| ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345714 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345714 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345714 114 + . alignment_id 1 ; Query gi|805819492|ref|XP_012149880.1| ; Align 1345565 224 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805809810|ref|XP_003705978.2| PREDICTED: putative odorant receptor 92a [Megachile rotundata] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 346 -> 397 Target range: 1345564 -> 1345717 347 : SerGlnAlaIleAlaValAlaAlaTyrAsnSerProTrpTyrArgTrpSerAlaSe : 365 |||...! !!!: ! !|||..!||| !||| !|||||| !! !!! !!. SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 366 : rSerArgThrProIleAlaValLeuLeuValArgAlaGlnLysProAlaArgLeuT : 384 !! !! ! ! !!:!! ! !!! !:!!!.!|||:!!|||||||||:!! !|||| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 385 : hrAlaGlyLysPheValValLeuSerLeuAspThrPheGly : 397 |||||||||||||| !|||!!!||||||!!:||||||||| hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGly 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGC : 1345717 vulgar: gi|805809810|ref|XP_003705978.2| 346 397 . KQ414782.1 1345564 1345717 + 100 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345717 100 + . gene_id 1 ; sequence gi|805809810|ref|XP_003705978.2| ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345717 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345717 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345717 100 + . alignment_id 1 ; Query gi|805809810|ref|XP_003705978.2| ; Align 1345565 347 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805798914|ref|XP_012143986.1| PREDICTED: odorant receptor 9a-like [Megachile rotundata] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 323 -> 367 Target range: 1345582 -> 1345714 324 : SerLeuTyrSerCysThrTrpTyrAsnPheSerThrAsnValAlaLysGluIleIl : 342 :!!! !|||! ! !!!.!||||||:!!!!. !! !!!. !.!!::!..!:!!|| AlaCysTyrPheSerAsnTrpTyrAspLeuProAspLysTyrThrArgSerLeuIl 1345583 : GCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAAATACACGCGATCGTTAAT : 1345637 343 : ePheValIleLeuArgAlaGlnLysProAlaHisLeuValAlaGlyLysPheThrV : 361 |||| !||| !|||:!!|||||||||:!!:!!|||..!|||||||||||| !| ePheCysIleAlaArgSerGlnLysProSerTyrLeuThrAlaGlyLysPheTyrV 1345638 : ATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAGCTGGCAAGTTCTACG : 1345694 362 : alValAsnLeuGluThrPhe : 367 || !!:::|||||||||||| alPheSerLeuGluThrPhe 1345695 : TGTTCTCGTTAGAAACATTC : 1345714 vulgar: gi|805798914|ref|XP_012143986.1| 323 367 . KQ414782.1 1345582 1345714 + 109 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345583 1345714 109 + . gene_id 1 ; sequence gi|805798914|ref|XP_012143986.1| ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345583 1345714 . + . KQ414782.1 exonerate:protein2genome:local exon 1345583 1345714 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345583 1345714 109 + . alignment_id 1 ; Query gi|805798914|ref|XP_012143986.1| ; Align 1345583 324 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795911|ref|XP_012143140.1| PREDICTED: odorant receptor 49a-like [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 69 -> 155 Target range: 26246 -> 25988 70 : IleTrpIlePheThrIlePhePheLeuSerMetProLeuCysProIlePheLeuAspPhe : 89 |||! !:!!! !.!! !.!.|||:!!!!!:!!|||!!! !! .!!||||||.!! IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIle 26246 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATC : 26189 90 : IleLeuProLeuAsnGluThrArgAlaArgGluProLeuPheLysLeuAsnTyrMetVal : 109 :!!:!!|||||||||||||||||||||||| ! !:!!!:! ! ! !!|||.!.||| LeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal 26188 : CTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC : 26129 110 : AspMetArgAspHisPhePheIleGluTyrPheHisSerAlaPheSerSerIleValVal : 129 ||| ! ! ! :!! !!:!:!: |||! ! !.!! ! !:!!:!!:!! AspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeu 26128 : GACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTT : 26069 130 : ValLeuIleThrAlaThrPheAspSerLeuTyrMetValIleIleHisTyrGlyCysGly : 149 :!!! !:!! !..!.!!! !|||:!! !|||:!! ! !:!:!!.:!!!.!|||||| IleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGly 26068 : ATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGA : 26009 150 : LeuPheAlaLeuCysGly : 155 |||!!.|||:!!...||| LeuLeuAlaIleAlaGly 26008 : TTGTTGGCCATTGCAGGG : 25989 vulgar: gi|805795911|ref|XP_012143140.1| 69 155 . LHQN01017803.1 26246 25988 - 122 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26246 122 - . gene_id 1 ; sequence gi|805795911|ref|XP_012143140.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26246 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26246 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26246 122 - . alignment_id 1 ; Query gi|805795911|ref|XP_012143140.1| ; Align 26247 70 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795911|ref|XP_012143140.1| PREDICTED: odorant receptor 49a-like [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 266 -> 324 Target range: 22422 -> 22171 267 : TyrSerSerLysTrpTyrGlnThrProValLysTyrGlnArgThrIleLeuThrMetGln : 286 |||..!|||! !||||||.!.:!! !! !||| ||| ! ! !:!! ! ! ! TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeu 22422 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTA : 22365 287 : IleArgCysSerLysAlaCysLysLeuThrAlaGlyGlyPheTyrGluMetAsnMetGlu : 306 !!! !! !!!. !! ! !|||||||||||||||||| !:!!|||:!::!! ArgSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLys 22364 : CGGAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAG : 22305 307 : AsnPheGlyAla >>>> Target Intron 1 >>>> IleIleLysThrSerValS : 317 !.!|||..!! ! 77 bp |||||||||:!!||||||| ThrPheSerGlu++ ++IleIleLysSerSerValS 22304 : ACCTTCTCAGAGgt.........................agATTATAAAATCATCCGTGT : 22195 318 : erTyrPheThrValLeuLeuSer : 324 |||||!:!||||||:!!! !||| erTyrTyrThrValMetGlnSer 22194 : CTTACTATACGGTGATGCAATCG : 22172 vulgar: gi|805795911|ref|XP_012143140.1| 266 324 . LHQN01017803.1 22422 22171 - 104 M 44 132 5 0 2 I 0 73 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 22172 22422 104 - . gene_id 2 ; sequence gi|805795911|ref|XP_012143140.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 22291 22422 . - . LHQN01017803.1 exonerate:protein2genome:local exon 22291 22422 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 22289 22290 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 22214 22290 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 22214 22215 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 22172 22213 . - . LHQN01017803.1 exonerate:protein2genome:local exon 22172 22213 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 22172 22422 104 - . alignment_id 2 ; Query gi|805795911|ref|XP_012143140.1| ; Align 22423 267 132 ; Align 22214 311 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795911|ref|XP_012143140.1| PREDICTED: odorant receptor 49a-like [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 59 -> 155 Target range: 18474 -> 18186 60 : SerGlnMetGlySerMetPheArgSerSerIleTrpIlePheThrIlePhePheLeuSer : 79 :!! :!:! ! !!!!:|||! ! !!:! !::|||! !:!!.!!!!.|||:!!..! AlaThrLeuAspArgIlePheProValAsnAlaTyrIleCysSerPheLeuPheIleGln 18474 : GCAACTCTCGATCGGATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAA : 18417 80 : MetProLeuCysProIlePheLeuAspPheIleLeuProLeuAsnGluThrArgAlaArg : 99 :!!|||! !! !! !!!.:!!:!!! ! ! !!! !||| !|||! !::! ! ValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeu 18416 : GTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTG : 18357 100 : GluProLeuPheLysLeuAsnTyrMetValAspMetArgAspHisPhePheIleGluTyr : 119 ! !:!! ! ! !!|||.!.|||||| !!!::!!!:!!:! ! ProValValValProGlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIle 18356 : CCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATA : 18297 120 : PheHisSerAlaPheSerSerIleValValValLeuIleThrAlaThrPheAspSerLeu : 139 .!!|||.!!.!!! !!!!! !:!::!!||||||:!!:!: !..!.!!! !|||!!! ! LeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCysAspThrSer 18296 : CTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGT : 18237 140 : TyrMetValIleIleHisTyrGlyCysGlyLeuPheAlaLeuCysGly : 155 |||||||||:!::!:!!.:!! !|||||||||||||||:!!..!||| TyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly 18236 : TACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 18187 vulgar: gi|805795911|ref|XP_012143140.1| 59 155 . LHQN01017803.1 18474 18186 - 103 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18187 18474 103 - . gene_id 3 ; sequence gi|805795911|ref|XP_012143140.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18187 18474 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18187 18474 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18187 18474 103 - . alignment_id 3 ; Query gi|805795911|ref|XP_012143140.1| ; Align 18475 60 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805798914|ref|XP_012143986.1| PREDICTED: odorant receptor 9a-like [Megachile rotundata] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 316 -> 380 Target range: 34381 -> 34656 317 : GlnMetAlaGlyValGlyTyrSerLeuTyrSerCysThrTrpTyrAsnPheSerThrAsn : 336 |||! !! !:!!.!! !!||| !|||..!! !.!||||||||| !!||| !! GlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProPro 34382 : CAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCA : 34439 337 : ValAlaLysGluIleIlePheValIleLeuArgAlaGlnLysProAlaHisLeuValAla : 356 ! !|||||| :!!:!!|||:!!!!:! !|||.!! :::||| ! !|||..!||| GluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAla 34440 : GAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCA : 34499 357 : GlyLysPheThrValValAsnLeuGluThrPheThrSer >>>> Target Intron : 370 |||||||||!:!..! !!::!:!!|||! !|||!:!!!! 83 bp GlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34500 : GGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt................... : 34543 371 : 1 >>>> IleLeuLysThrSerMetSerCysLeuSerVal : 380 ||||||||||||:!!|||.!!! !||||||||| ++IleLeuLysThrAlaMetGlyTyrLeuSerVal 34544 : ......agattcTGAAAACAGCAATGGGATATCTTTCAGTT : 34656 vulgar: gi|805798914|ref|XP_012143986.1| 316 380 . KQ414804.1 34381 34656 + 115 M 53 159 5 0 2 I 0 79 3 0 2 M 11 33 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34382 34656 115 + . gene_id 1 ; sequence gi|805798914|ref|XP_012143986.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34382 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34382 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34656 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34656 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34382 34656 115 + . alignment_id 1 ; Query gi|805798914|ref|XP_012143986.1| ; Align 34382 317 159 ; Align 34624 370 33 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795867|ref|XP_012143125.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 85 -> 214 Target range: 44673 -> 45063 86 : HisArgAlaAsnIleLeuThrLeuIleLysArgLeuGluArgAsnTyrPheLeuProIle : 105 ||| :!: !:!!|||:!:||| !!:!!! !:!!!:: ! ! ! HisPheGlnAlaLeuLysSerLeuLeuLysCysMetAlaAspAspTrpSerThrValSer 44674 : catttccaaGCACTGAAATCTCTGCTGAAATGCATGGCCGACGATTGGAGCACAGTATCG : 44731 106 : ThrLysGlnGluMetGluIleArgSerArgPheAspArgIleIleGluSerThrSerLys : 125 ! !|||.!.!!::!:!!:! !! !|||!.!.!!! ||||||! !..!!.!|||! !! ! LysLysAspAspLeuAspThrMetSerAsnIleAlaArgIleThrArgLysThrIleIle 44732 : AAAAAAGATGATCTAGACACCATGAGTAACATCGCAAGGATCACCAGAAAGACTATAATA : 44791 126 : AlaTyrThrAlaLeuLeuGlyPhePheAlaPheLeuValLeuPheMetThrIleValIle : 145 ::! !|||!.!|||! ! !.!! ! !.!.!! ! !:!!|||:!: !.!!:!!! ! SerSerThrValLeuCysHisIleValValIleThrTyrIlePheLeuArgPheLeuThr 44792 : AGCAGCACAGTGTTATGTCACATTGTGGTCATCACTTATATATTTCTACGATTCCTCACC : 44851 146 : <->GlyPheAsnLysArgLysLeuValPheArgMetTrpLeuProTyrAsnTyrSerSer : 164 !!:!!:! ! !!:!|||:!!|||||| !::!!!||||||:!! !..! ! ArgLysTyrSerGlyThrArgLeuLeuPheArgAlaTyrPheProTyrAspSerAspVal 44852 : AGGAAGTACAGCGGCACCAGACTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTC : 44911 165 : AlaArgLeuTyrIleLeuThrSerValTyrGluValMetValThrSerTyrGlyValSer : 184 ::!! ! !||| !!!!||| !:!! !:!!:!!!!:!.!.!!! !|||!.!!.!!!! SerProAsnTyrGluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThr 44912 : AGTCCAAATTACGAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACC : 44971 185 : ValSerIleAlaCysGluCysLeuTyrThrGlyLeuIleLeuHisValCysCysGlnPhe : 204 ..!! !! !||| !!!: !!!! !..! !|||||||||||||||||| ! |||.!! ThrTyrThrAlaValAspThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeu 44972 : ACATACACAGCCGTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTT : 45031 205 : GluIleLeuGluHisArgPheLysMetLeu : 214 ..!! !|||..!:!!..!||| ! !||| SerAsnLeuArgAsnGluPheGlyLysLeu 45032 : TCGAATTTGAGAAACGAATTCGGTAAGCTT : 45063 vulgar: gi|805795867|ref|XP_012143125.1| 85 214 . KQ414804.1 44673 45063 + 103 M 60 180 G 0 3 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44674 45063 103 + . gene_id 1 ; sequence gi|805795867|ref|XP_012143125.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44674 45063 . + . KQ414804.1 exonerate:protein2genome:local exon 44674 45063 . + . insertions 3 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44674 45063 103 + . alignment_id 1 ; Query gi|805795867|ref|XP_012143125.1| ; Align 44674 86 180 ; Align 44857 146 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805809121|ref|XP_012146759.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 257 -> 306 Target range: 34378 -> 34525 258 : TyrGluSerThrLysValAsnAspAlaTyrTyrAspAlaAsnTrpLeuLysLeuSerThr : 277 !:!:!!|||! !:!!:!!!:!:!!:!! !|||!!::!!||||||! !!!.:!!||| !! PheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerPro 34379 : TTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCT : 34436 278 : ArgAspGlnLysLeuLeuLeuTyrCysMetCysAsnGlyArgArgThrLeuSerLeuThr : 297 ! !!!: |||! !||||||!:! !||| !!.. ! !||| !!|||!!!|||||| ProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThr 34437 : CCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACT : 34496 298 : AlaGlyLysPheTyrSerPheSerLeu : 306 |||||||||||| !!!!||||||:!! AlaGlyLysPheSerThrPheSerMet 34497 : GCAGGAAAATTCAGTACCTTCTCCATG : 34525 vulgar: gi|805809121|ref|XP_012146759.1| 257 306 . KQ414804.1 34378 34525 + 101 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34379 34525 101 + . gene_id 1 ; sequence gi|805809121|ref|XP_012146759.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 34379 34525 . + . KQ414804.1 exonerate:protein2genome:local exon 34379 34525 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34379 34525 101 + . alignment_id 1 ; Query gi|805809121|ref|XP_012146759.1| ; Align 34379 258 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795873|ref|XP_012143127.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 87 -> 174 Target range: 44802 -> 45063 88 : AlaIleCysPhePheGlyGlyAlaValPheAlaPheValThrThrThrIleIleAspPhe : 107 !.!:!!||| !.!!! !! ! !..!!:! !|||:!! ! ! !! !! ! !:! ValLeuCysHisIleValValIleThrTyrIlePheLeuArgPheLeuThrArgLysTyr 44803 : GTGTTATGTCACATTGTGGTCATCACTTATATATTTCTACGATTCCTCACCAGGAAGTAC : 44860 108 : LysLysArgArgLeuIleValSerValTrpLeuProTyrAsnTyrSerSerAlaThrLeu : 127 !.. ! !||||||:!! !! !!!.!!::!!!||||||:!! !..! !::! !! ! SerGlyThrArgLeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsn 44861 : AGCGGCACCAGACTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAAT : 44920 128 : TyrLeuLeuThrSerAlaTyrGluTrpValAlaGlyGluTyrAlaIleMetThrSerAla : 147 ||| !!!!||| ! ! !:!! :!!|||!.! |||||| !! |||! !.!! TyrGluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThr 44921 : TACGAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACA : 44980 148 : AlaCysAspCysLeuTyrIleGlyLeuLeuLeuHisIleCysGlyGlnIleLysValLeu : 167 ||| !||| !!!! !:!! !|||:!!||||||:!!|||||||||:!!..! !||| AlaValAspThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeu 44981 : GCCGTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTG : 45040 168 : GluHisArgPheGlnThrLeu : 174 ..!:!!..!||| ! !||| ArgAsnGluPheGlyLysLeu 45041 : AGAAACGAATTCGGTAAGCTT : 45063 vulgar: gi|805795873|ref|XP_012143127.1| 87 174 . KQ414804.1 44802 45063 + 100 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44803 45063 100 + . gene_id 1 ; sequence gi|805795873|ref|XP_012143127.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44803 45063 . + . KQ414804.1 exonerate:protein2genome:local exon 44803 45063 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44803 45063 100 + . alignment_id 1 ; Query gi|805795873|ref|XP_012143127.1| ; Align 44803 88 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795911|ref|XP_012143140.1| PREDICTED: odorant receptor 49a-like [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 63 -> 153 Target range: 457141 -> 457411 64 : SerMetPheArgSerSerIleTrpIlePheThrIlePhePheLeuSerMetProLeuC : 83 ||||||.!!! ! !|||! !!:: ! !.!!:!: !!.!! !!!!:!!! !|||! SerMetIleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuP 457142 : tcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCT : 457199 84 : ysProIlePheLeuAspPheIleLeuProLeuAsnGluThrArgAlaArgGluProLe : 102 !||||||!!.||||||.!!:!::!!||||||||||||:!!||| !! !!||| !! heProIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTy 457200 : TTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATA : 457256 103 : uPheLysLeuAsnTyrMetValAspMetArgAspHisPhePheIleGluTyrPheHis : 121 !.!!! ! !.!.|||.!.|||||||||!:! ! :!!.!. ! ! ! ||| rLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHis 457257 : CCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCAC : 457313 122 : SerAlaPheSerSerIleValValValLeuIleThrAlaThrPheAspSerLeuTyrM : 141 ! ! ! !!! !:!::!!!.!!.! !! !.!!.!! !!!:|||||| !! IleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuI 457314 : ATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTA : 457373 142 : etValIleIleHisTyrGlyCysGlyLeuPheAlaLeu : 153 !:..!! !:!!! :!!! !|||||||||||| !||| leThrAsnValLeuHisValCysGlyLeuPheLysLeu 457374 : TAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: gi|805795911|ref|XP_012143140.1| 63 153 . KQ414815.1 457141 457411 + 109 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457142 457411 109 + . gene_id 1 ; sequence gi|805795911|ref|XP_012143140.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457142 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457142 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457142 457411 109 + . alignment_id 1 ; Query gi|805795911|ref|XP_012143140.1| ; Align 457142 64 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795911|ref|XP_012143140.1| PREDICTED: odorant receptor 49a-like [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 86 -> 153 Target range: 482034 -> 482235 87 : LeuAspPheIleLeuProLeuAsnGluThrArgAlaArgGluProLeuPheLysLeuA : 106 |||||| !!|||:!!||||||||||||||||||.!!!.!:!! !! ! ! ..!:!!. LeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMetG 482035 : CTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGG : 482092 107 : snTyrMetValAspMetArgAspHisPhePheIleGluTyrPheHisSerAlaPheSe : 125 !.|||.!.:!!|||..!!:! ! :!!! .!!.!! ||||||..! !||||| luTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSe 482093 : AGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTC : 482149 126 : rSerIleValValValLeuIleThrAlaThrPheAspSerLeuTyrMetValIleIle : 144 |! !:!!||||||!.! !|||! !!.! !.!.!!:!!!||| !:!::!! :!! rPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeu 482150 : CTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTT : 482206 145 : HisTyrGlyCysGlyLeuPheAlaLeu : 153 .!.:!!!.!....!!||||||.!!||| GluHisAlaAlaSerLeuPheThrLeu 482207 : GAACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: gi|805795911|ref|XP_012143140.1| 86 153 . KQ414815.1 482034 482235 + 105 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482035 482235 105 + . gene_id 2 ; sequence gi|805795911|ref|XP_012143140.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482035 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 482035 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482035 482235 105 + . alignment_id 2 ; Query gi|805795911|ref|XP_012143140.1| ; Align 482035 87 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793961|ref|XP_012142611.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 544 Query range: 112 -> 359 Target range: 2894 -> 6459 113 : AsnGluSerGluArgValLeuProPheLysMetTyrLeuAsnValProIleGlnAlaThrPr : 133 |||||||||!!:|||:!!||| ! !!!!..!.!:::!!:!!:!!|||||| !||||| AsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuProIleThrIleThrPr 2895 : aatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCCGATAACCATCACACC : 2955 134 : oTyrPheGluIleAlaTyrIleThrGln >>>> Target Intron 1 >>>> ValLe : 144 ||||:::|||||| ::: !||| 406 bp :!!!! oTyrTyrGluIleLeuPheThrIleGln++ ++IlePh 2956 : ATactatgaaatattatttacgaTACAGgt.........................agATTTT : 3394 145 : uAlaLeuCysProValGlyPheSerTyrPheSerLeuAspAsnValLeuCysIleIleAsnL : 165 ! !:!! !||| !!.!.||||||.!!!!!:!!|||||| !!||||||!!:||||||| eIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheLeuCysMetIleAsnL 3395 : TATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTCTGTGCATGATCAATC : 3457 166 : euHisIleAlaGlyGlnPheArgIleLeuGlnTyrArgLeuSerAspLysTyrSerGlyGln : 185 |||||! !||| !||||||||||||||||||||||||||||||:!! !! !.!!!.!.!. euHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAsn 3458 : TACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAAC : 3517 186 : ValGlnAsnGlyLeuAspGlnLysSerAspLeuTyrLeuLysAspAsnAlaProAspValPh : 206 ! !!::!:: ...|||... ! !! ! !..!|||.!...! !! ! !|| GluArgSerAspLysIleSerLysLysThrProSerAsnSerAspGluCysTyrAlaLysPh 3518 : GAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTT : 3580 207 : eLysSerTyrIleArgGlnHisGlnAlaLeuIleThrTyrCysAsnGluLeuGlnGluValP : 227 ||||!:!! !|||!:!|||||||||||||||||| !|||||||||:!!||||||||||||| eLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnLysLeuGlnGluValP 3581 : CAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACAAACTTCAAGAGGTGT : 3643 228 : heGlyIleIleValLeuAlaLeuTyrSerGlnValMetThrPheSerMetLeuIleCysLeu : 247 ||||||||.!!||||||||| ||||||:!! !||||||:!!|||!!:|||||| heGlyIlePheValLeuAla---------GlnValLeuLeuPheSerLeuLeuMetCysLeu 3644 : TCGGTATATTTGTGCTTGCA---------CAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTC : 3694 248 : AspGlyPheGlnValLeu >>>> Target Intron 2 >>>> LeuLeuAspLeuIle : 258 ||||||!:! !|||:!! 457 bp ! ! !! !||| AspGlyTyrLeuValMet++ ++GluAspThrProIle 3695 : GATGGATATTTGGTGATGgt.........................agGAAGATACTCCCATT : 4184 259 : GlnArgLysValIlePhePhePheHisLeuLeuThrThrValCysGlnLeuIleMetPheSe : 279 ..!!:!::::!!! !|||!!.||||||||| ! ! !:!!|||||||||:!:||||||!! MetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuMetPheTh 4185 : ATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGATGTTCAC : 4247 280 : rTyrSerCysAspCysIleIleArgGluSerValAsnLeuAlaThrAlaAlaPheSerGlyP : 300 !|||||||||||||||:!:||||||||||||:!!|||:!!|||!.!||| !!:!..! !! rTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIleTyrAspCysS 4248 : CTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATATACGACTGCT : 4310 301 : roTrpLeuLeuLeuProSerSerLysGlyIleAspAsnLeuLysLysAspPheIleMetLeu : 320 !!|||:!!! !||||||! !..!!:!..! ! |||::!||||||!!.! !.!.:!! erTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAspLeuThrPheVal 4311 : CGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGACATTCGTC : 4370 321 : IleMetArgSerAsnLysProCysTyrIleSerGlyLeuGlyPhePheIleValSerLeuGl : 341 ||| ||||||!.. !||||||! !:!!!!!!.!! !||||||||| !||||||||||| IleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePheProValSerLeuGl 4371 : ATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGA : 4433 342 : uThrSerThrArg >>>> Target Intron 3 >>>> ValIleThrThrAlaGlySe : 352 ||||! !||| ! 1970 bp ||||||!:!||||||! !|| uThrTyrThrSer++ ++ValIleSerThrAlaValSe 4434 : AACGTACACTTCGgt.........................agGTTATAAGTACAGCAGTGTC : 6436 353 : rTyrPheThrLeuLeuGlnGln : 359 ||||||||||||||||::!||| rTyrPheThrLeuLeuArgGln 6437 : GTACTTCACACTGTTAAGGCAA : 6459 vulgar: gi|805793961|ref|XP_012142611.1| 112 359 . KQ414828.1 2894 6459 + 544 M 30 90 5 0 2 I 0 402 3 0 2 M 91 273 G 3 0 M 17 51 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2895 6459 544 + . gene_id 1 ; sequence gi|805793961|ref|XP_012142611.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2895 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2895 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 0 ; deletions 3 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6459 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6459 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2895 6459 544 + . alignment_id 1 ; Query gi|805793961|ref|XP_012142611.1| ; Align 2895 113 90 ; Align 3391 143 273 ; Align 3664 237 51 ; Align 4172 254 276 ; Align 6418 346 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793961|ref|XP_012142611.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 462 Query range: 105 -> 360 Target range: 32386 -> 34304 106 : LeuLeuValAsnLeuPheMetAsnGluSerGluArgValLeuProPheLysMetTyrLeu : 125 :::|||...|||||| ! !|||||||||!!:|||! !! ! !!:! ! |||!::||| IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 32387 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 32444 126 : AsnValProIleGlnAlaThrProTyrPheGluIleAlaTyrIleThrGln >>>> Ta : 143 :!!:!!|||:!!...!.!|||||||||:::||||||...||||||! !||| AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGln++ 32445 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGgt....... : 32500 144 : rget Intron 1 >>>> ValLeuAlaLeuCysProValGlyPheSerTyrPheSerL : 156 307 bp !.!|||:!!:!!! !! !|||||| ! !!!|||.!!!!!! ++AlaLeuSerValTyrGlnValGlyValCysTyrLeuCysP 32501 : ..................agGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCT : 32844 157 : euAspAsnValLeuCysIleIleAsnLeuHisIleAlaGlyGlnPheArgIleLeuGlnT : 176 ..||||||:::... |||::: !||||||:!:||||||||||||||||||||||||| heAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnT 32845 : ttgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAAT : 32904 177 : yrArgLeuSerAspLysTyrSer<->GlyGlnValGlnAsnGlyLeuAspGlnLysSerA : 195 |||||:!!:!!:!! !! .!! .!!:!!:!! !!!..!! !|||.!.! !||| yrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerAsnAspAsnThrSerT 32905 : ACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACAAGCA : 32964 196 : spLeuTyrLeu<->LysAspAsnAlaProAspValPheLysSerTyrIleArgGlnHisG : 214 ! ! ||| ..!!!:!!...! ! ! !||||||!:!! !|||!:!||||||| hrAlaGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisG 32965 : CGGCTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATC : 33024 215 : lnAlaLeuIleThrTyrCysAsnGluLeuGlnGluValPheGlyIleIleValLeuAlaL : 234 ||||||||||| :::|||... |||:!!||||||||| !:!!||||||||| lnAlaLeuIleGluPheCysGluIleLeuGluGluValPheThrValIleValLeu---- 33025 : AGGCACTaattgaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTC---- : 33081 235 : euTyrSerGlnValMetThrPheSerMetLeuIleCysLeuAspGlyPheGlnValLeuL : 254 .!!||||||:!:! !||||||!!::!!||||||!!!! !|||!:!:!!||||||| -----GlyGlnValLeuMetPheSerIleIleIleCysPheAlaGlyTyrGluValLeuL 33082 : -----GGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCC : 33135 255 : eu >>>> Target Intron 2 >>>> LeuAspLeu<->IleGlnArgLysValIl : 263 || 406 bp :!! ||| .!!:!! !:::||| eu++ ++IleThrLeuProPheGluSerArgValAl 33136 : TGgt.........................agATAACGTTACCATTTGAATCGCGCGTTGC : 33571 264 : ePhePhePheHisLeuLeuThrThrValCysGlnLeuIleMetPheSerTyrSerCysAs : 283 !||| ! ! !|||:!!||| !||| !!|||||| ||||||!!!|||||||||:! aPheThrCysPheLeuIleThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAs 33572 : TTTCACGTGCTTCTTGATTACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCAA : 33631 284 : pCysIleIleArgGluSerValAsnLeuAlaThrAlaAlaPheSerGlyProTrpLeuLe : 303 !||||||! !! !||||||:!!|||:!!||| !:!!!.!!:!:!!|||||||||:!! nCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAs 33632 : TTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAA : 33691 304 : uLeuProSerSerLysGlyIleAspAsnLeuLysLysAspPheIleMetLeuIleMetAr : 323 !||||||! ...||| |||!:!||||||!!. !:!!||||||:!!|| nLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuAr 33692 : TTTACCAATggataaatttggaaaactgCTAAGAAAGGATTTACAAGTGCTCATCTTGAG : 33751 324 : gSerAsnLysProCysTyrIleSerGlyLeuGlyPhePheIleValSerLeuGluThrSe : 343 |:!!!..::!|||! ! !:!:!!!!.!! !||||||||| !:!!!!!|||||||||! gAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleThrLeuGluThrPh 33752 : GGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATAACTCTCGAAACCTT : 33811 344 : rThrArg >>>> Target Intron 3 >>>> ValIleThrThrAlaGlySerTyr : 353 !|||!:! 440 bp :!!!!:!:!|||:!! !|||||| eThrLys++ ++IleMetSerThrSerMetSerTyr 33812 : TACTAAGgt.........................agATCATGAGTACATCAATGTCGTAT : 34281 354 : PheThrLeuLeuGlnGlnThr : 360 ||||||||||||:!!|||!:! PheThrLeuLeuLysGlnSer 34282 : TTCACCCTACTAAAACAAAGT : 34304 vulgar: gi|805793961|ref|XP_012142611.1| 105 360 . KQ414828.1 32386 34304 + 462 M 37 111 5 0 2 I 0 303 3 0 2 M 41 123 G 0 3 M 15 45 G 0 3 M 34 102 G 3 0 M 19 57 5 0 2 I 0 402 3 0 2 M 3 9 G 0 3 M 88 264 5 0 2 I 0 436 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32387 34304 462 + . gene_id 2 ; sequence gi|805793961|ref|XP_012142611.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32387 32497 . + . KQ414828.1 exonerate:protein2genome:local exon 32387 32497 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32498 32499 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32498 32804 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32803 32804 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32805 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32805 33137 . + . insertions 6 ; deletions 3 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 3 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34304 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34304 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32387 34304 462 + . alignment_id 2 ; Query gi|805793961|ref|XP_012142611.1| ; Align 32387 106 111 ; Align 32805 143 123 ; Align 32931 184 45 ; Align 32979 199 102 ; Align 33081 236 57 ; Align 33544 255 9 ; Align 33556 258 264 ; Align 34260 346 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793961|ref|XP_012142611.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 422 Query range: 203 -> 366 Target range: 18237 -> 19918 204 : AspValPheLysSerTyrIleArgGlnHisGlnAlaLeuIleThrTyrCysAsnGluLeu : 223 :!!|||.!!|||..!|||||||||||||||||| !||||||.!!|||||||||:!!||| AsnValLeuLysAspTyrIleArgGlnHisGlnAsnLeuIleAlaTyrCysAsnLysLeu 18238 : AACGTTCTCAAAGATTATATCAGACAGCATCAGAACCTGATTGCTTATTGCAACAAACTC : 18295 224 : GlnGluValPheGlyIleIleValLeuAlaLeuTyrSerGlnValMetThrPheSerMet : 243 :!!:!!||||||..!|||||||||||| .!!|||:!!:!:! !||||||||| GluLysValPheAsnIleIleValLeu---------GlyGlnLeuLeuMetPheSerMet 18296 : GAGAAAGTGTTCAATATCATTGTTCTG---------GGGCAATTGTTAATGTTCAGCATG : 18346 244 : LeuIleCysLeuAspGlyPheGlnValLeuLeuLeuAspLeuIle{Gl} >>>> Targ : 259 ||||||||||||||||||||||||:!!|||:!!:!!! !:!!! !{::} LeuIleCysLeuAspGlyPheGlnIleLeuMetValGlyMetArg{Ar}-+ 18347 : TTGATCTGTCTCGATGGATTTCAGATACTTATGGTTGGTATGAGA{AG}tt......... : 18398 260 : et Intron 1 >>>> {n}ArgLysValIlePhePhePheHisLeuLeuThrThrVal : 272 978 bp {!}! !::!:!!||||||.!!||||||:!! !.!! !:!! ++{g}ThrArgLeuIlePheIlePheHisIleGlyAlaCysMet 18399 : ................ag{A}ACCCGACTGATTTTCATCTTTCACATAGGAGCATGCATG : 19411 273 : CysGlnLeuIleMetPheSerTyrSerCysAspCysIleIleArgGluSerValAsnLeu : 292 |||||||||:!:||||||!!!||||||||||||||||||||||||||||||..!!:! ! CysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSerThrSerThr 19412 : TGTCAATTGCTGATGTTTACCTACAGCTGCGACTGCATCATAAGAGAAAGCACGAGCACC : 19471 293 : AlaThrAlaAlaPheSerGlyProTrpLeuLeuLeuProSerSerLysGlyIleAspAsn : 312 ||| !|||!.!!:!|||||||||||| !|||||||||! !||| !! ! ! ! ! AlaGluAlaValTyrSerGlyProTrpThrLeuLeuProMetSerAlaAspGlyLysMet 19472 : GCCGAGGCGGTGTACAGCGGTCCCTGGACACTTTTACCAATGAGCGCAGACGGAAAAATG : 19531 313 : LeuLysLysAspPheIleMetLeuIleMetArgSerAsnLysProCysTyrIleSerGly : 332 :!!!:!||||||!!.!!::!::!!||||||||||||!:! !||||||! !:!:!!!!.! IleArgLysAspLeuMetLeuValIleMetArgSerSerValProCysCysLeuThrAla 19532 : ATAAGGAAAGATTTGATGCTCGTTATCATGAGATCGAGCGTACCTTGTTGCTTGACAGCC : 19591 333 : LeuGlyPhePheIleValSerLeuGluThrSerThrArg >>>> Target Intron : 346 !|||||||||:!!|||||||||||||||! !||| !! 223 bp ArgGlyPhePheValValSerLeuGluThrTyrThrGly++ 19592 : AGAGGATTCTTCGTCGTGTCTTTAGAAACGTACACAGGGgt................... : 19635 347 : 2 >>>> ValIleThrThrAlaGlySerTyrPheThrLeuLeuGlnGlnThrGlnSerA : 363 |||:!!!:!||||||!.!||||||||||||||||||:!!|||! !..!..!| ++ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuLysGlnArgSerGluA 19636 : ......agGTTTTAAGCACCGCAGCCTCATACTTTACGTTGCTGAAGCAAAGATCAGAGA : 19907 364 : snIleAspSer : 366 || !|||||| snAlaAspSer 19908 : ATGCCGACAGT : 19918 vulgar: gi|805793961|ref|XP_012142611.1| 203 366 . KQ414828.1 18237 19918 + 422 M 29 87 G 3 0 M 23 69 S 0 2 5 0 2 I 0 974 3 0 2 S 1 1 M 86 258 5 0 2 I 0 219 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 18238 19918 422 + . gene_id 3 ; sequence gi|805793961|ref|XP_012142611.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 18238 18395 . + . KQ414828.1 exonerate:protein2genome:local exon 18238 18395 . + . insertions 0 ; deletions 3 KQ414828.1 exonerate:protein2genome:local splice5 18396 18397 . + . intron_id 1 ; splice_site "TT" KQ414828.1 exonerate:protein2genome:local intron 18396 19373 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 19372 19373 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19374 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19374 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19918 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19918 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 18238 19918 422 + . alignment_id 3 ; Query gi|805793961|ref|XP_012142611.1| ; Align 18238 204 87 ; Align 18325 236 69 ; Align 19375 260 258 ; Align 19856 346 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793961|ref|XP_012142611.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 410 Query range: 21 -> 180 Target range: 16180 -> 18153 22 : ValGluAsnLeuIlePheGlyLeuLeuAsnLeuLeuSerValLeuValProLeuIleLys : 41 :!!:!! !! !:!!!:! ! !! !|||:!!||||||:!! !:!!|||!!!:!!||| LeuGlnAlaCysLeuTyrThrAlaCysAsnIleLeuSerLeuThrIleProPheLeuLys 16181 : TTGCAGGCCTGTTTATATACTGCATGCAACATTTTATCGTTAACAATACCGTTTCTCAAG : 16238 42 : LeuLeuAlaLeuLeuProArgLysLysLysLeuPheGlyLeuIleAlaTyrMetValArg : 61 :!!|||!.!|||||| !!...|||... ...||| |||||| !:!!:!: !||| IleLeuValLeuLeuAlaHisLysAsnAspPhePheHisLeuIleLeuHisLeuGlnArg 16239 : ATACTCGTCTTGCTTGCAcacaaaaatgatttttttcatttgattcTGCACCTACAACGA : 16298 62 : AsnPheLeuLysAlaAspTyrAspAspPheGluThrSerIleLeuThrThrCysLysArg : 81 .!.|||||| ! |||||||||||||||!:!|||! !!.!|||||| ! !|||:!!||| GluPheLeuHisAlaAspTyrAspAspTyrGluLysLysIleLeuLeuGlyCysGlnArg 16299 : GAATTCTTGCATGCAGATTACGACGACTACGAGAAAAAGATTTTGCTCGGTTGCCAACGT : 16358 82 : LysCysSerPhePheValCysSerSerValCysPheThrGluLeuThrIleValSerTyr : 101 :!!|||!!!||||||||||||! !! !..! !||||||:!! !|||:!!:!!|||||| GlnCysThrPhePheValCysPhePheThrLeuPheThrLysGlyThrValIleSerTyr 16359 : CAATGTACCTTCTTCGTTTGTTTCTTCACACTTTTCACTAAAGGAACTGTTATCTCGTAC : 16418 102 : ValCysAlaProLeuLeu{V} >>>> Target Intron 1 >>>> {al}AsnLeu : 110 :!! ! !||||||:!!{!} 1386 bp {.!}|||::: IleValAsnProLeuIle{A}++ ++{la}AsnIle 16419 : ATCGTTAATCCGCTTATT{G}gt.........................ag{ca}aatatt : 17831 111 : PheMetAsnGluSerGluArgValLeuProPheLysMetTyrLeuAsnValProIleGln : 130 |||||||||||||||:!!|||||||||!!.|||!:::!!|||:!!|||:!!..! GlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpValAsnLeuProLeuSer 17832 : ggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTCAACTTGCCATTATCA : 17891 131 : AlaThrProTyrPheGluIleAlaTyrIleThrGln >>>> Target Intron 2 > : 143 !|||||||||!:!||||||...::: ||| 110 bp MetThrProTyrTyrGluIleThrPheSerLeuGln++ 17892 : ATGACGCCATATTACgaaataactttttcattaCAGgt...................... : 17932 144 : >>> ValLeuAlaLeuCysProValGlyPheSerTyrPheSerLeuAspAsnValLeuC : 161 ||||||:!!|||! !! !:!!||| ! |||||||||! ...|||||| |||| ++ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPheLeuC 17933 : ...aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgcttcgacaattttttat : 18094 162 : ysIleIleAsnLeuHisIleAlaGlyGlnPheArgIleLeuGlnTyrArgLeuSerAsp : 180 |||||!!:||||||||| ||| !|||||||||:!!||||||||||||:!!:!!:!! ysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnTyrArgMetAlaAsn 18095 : gcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAATACCGAATGGCGAAT : 18153 vulgar: gi|805793961|ref|XP_012142611.1| 21 180 . KQ414828.1 16180 18153 + 410 M 86 258 S 0 1 5 0 2 I 0 1382 3 0 2 S 1 2 M 34 102 5 0 2 I 0 106 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 16181 18153 410 + . gene_id 4 ; sequence gi|805793961|ref|XP_012142611.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 16181 16439 . + . KQ414828.1 exonerate:protein2genome:local exon 16181 16439 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 16440 16441 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 16440 17825 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 17824 17825 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 17826 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17826 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18153 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18153 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 16181 18153 410 + . alignment_id 4 ; Query gi|805793961|ref|XP_012142611.1| ; Align 16181 22 258 ; Align 17828 109 102 ; Align 18040 143 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793961|ref|XP_012142611.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 354 Query range: 105 -> 346 Target range: 22307 -> 23829 106 : LeuLeuValAsnLeuPheMetAsnGluSerGluArgValLeuProPheLysMetTyrLeu : 125 :::|||...|||||| ! !|||||||||!!:|||! !! ! !!:! ! |||!::||| IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 22308 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 22365 126 : AsnValProIleGln >>>> Target Intron 1 >>>> AlaThrProTyrPheG : 136 :!!:!!|||:!!... 307 bp !! !||| : AspLeuProLeuSer++ +-MetIleProGlyAsnL 22366 : GATCTACCATTATCCgt.........................aaATGATTCCAGgtaata : 22705 137 : luIleAlaTyrIleThrGlnValLeuAlaLeuCysProValGlyPheSerTyrPheSerL : 156 :: ::!||||||!.!|||:!!:!!! !! !|||.!! !!!|||.!!!!!. ysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysP 22706 : aaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCt : 22765 157 : euAspAsnValLeuCysIleIleAsnLeuHisIleAlaGlyGlnPheArgIleLeuGlnT : 176 ..||| :::... |||::: ||||||:!:||||||||||||||||||||||||| heAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnT 22766 : ttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAAT : 22825 177 : yrArgLeuSerAsp<-><->LysTyrSerGlyGlnValGlnAsnGlyLeuAspGlnLysS : 194 |||||:!!:!!:!! |||! ! !|||:!!!:!.!! !:!!! !!..! yrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSerT 22826 : ACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCA : 22885 195 : erAspLeuTyrLeuLysAspAsnAlaProAspValPheLysSerTyrIleArgGlnHisG : 214 !!||| !! ! !..!!!:!!...! ! ! !||||||!:!! !|||!:!||||||| hrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisG 22886 : CAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATC : 22945 215 : lnAlaLeuIleThrTyrCysAsnGluLeuGlnGluValPheGlyIleIleValLeuAlaL : 234 ||||||||||| !!:!||| !|||:!!||||||||| !:!!||||||||| lnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleValLeu---- 22946 : AGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTC---- : 23002 235 : euTyrSerGlnValMetThrPheSerMetLeuIleCysLeuAspGlyPheGlnValLeuL : 254 .!!||||||:!:! !! !|||!!:|||||||||!!! !|||!:!|||||||||| -----GlyGlnValLeuMetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeuL 23003 : -----GGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCC : 23056 255 : eu >>>> Target Intron 2 >>>> LeuAspLeu<->IleGlnArgLysValIl : 263 || 492 bp :!! ! ||| .!!:!! !:::||| eu++ ++IleLysLeuSerPheGluSerArgValAl 23057 : TGgt.........................agATAAAGTTATCATTTGAATCGCGCGTTGC : 23578 264 : ePhePhePheHisLeuLeuThrThrValCysGlnLeuIleMetPheSerTyrSerCysAs : 283 !||| ! ! !|||:!!! ! !:!! !!|||||| ||||||!!!||||||||||| aPheAlaCysPheLeuMetMetGlyMetSerGlnLeuTrpMetPheThrTyrSerCysAs 23579 : TTTCGCGTGCTTCTTGATGATGGGCATGAGTCAACTATGGATGTTCACGTATAGTTGCGA : 23638 284 : pCysIleIleArgGluSerValAsnLeuAlaThrAlaAlaPheSerGlyProTrpLeuLe : 303 |||||||! !! !||||||:!!|||:!!||| !:!!!.!!:!:!!|||||||||:!! pCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAs 23639 : TTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAA : 23698 304 : uLeuProSerSerLysGlyIleAspAsnLeuLysLysAspPheIleMetLeuIleMetAr : 323 !||||||! !..!||| ! ! ! |||!:!|||!!:!!. !|||||||||:!!|| nLeuProMetAspLysPheGlyLysLeuLeuArgLysGluLeuGlnMetLeuIleLeuAr 23699 : TTTACCAATGGACAAATTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAG : 23758 324 : gSerAsnLysProCysTyrIleSerGlyLeuGlyPhePheIleValSerLeuGluThrSe : 343 |:!!!..::!|||! ! !:!:!!!!.!! !||||||||| !:!!||||||||||||! gAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPh 23759 : GGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTT : 23818 344 : rThrArgVal : 346 !|||!:!||| eThrLysVal 23819 : TACTAAGGTA : 23829 vulgar: gi|805793961|ref|XP_012142611.1| 105 346 . KQ414828.1 22307 23829 + 354 M 25 75 5 0 2 I 0 303 3 0 2 M 50 150 G 0 6 M 52 156 G 3 0 M 19 57 5 0 2 I 0 488 3 0 2 M 3 9 G 0 3 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22308 23829 354 + . gene_id 5 ; sequence gi|805793961|ref|XP_012142611.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22308 22382 . + . KQ414828.1 exonerate:protein2genome:local exon 22308 22382 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22383 22384 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22383 22689 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22688 22689 . + . intron_id 0 ; splice_site "AA" KQ414828.1 exonerate:protein2genome:local cds 22690 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22690 23058 . + . insertions 6 ; deletions 3 KQ414828.1 exonerate:protein2genome:local splice5 23059 23060 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23059 23550 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 23549 23550 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 23551 23829 . + . KQ414828.1 exonerate:protein2genome:local exon 23551 23829 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22308 23829 354 + . alignment_id 5 ; Query gi|805793961|ref|XP_012142611.1| ; Align 22308 106 75 ; Align 22690 131 150 ; Align 22846 181 156 ; Align 23002 236 57 ; Align 23551 255 9 ; Align 23563 258 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793961|ref|XP_012142611.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 312 Query range: 148 -> 364 Target range: 10849 -> 13161 149 : ValGlyPheSerTyrPheSerLeuAspAsnValLeuCysIleIleAsnLeuHisIleAla : 168 ..!|||.!!!!!||||||!!!!!!||||||:!!!!!||||||!!:!:!:!!|||:!:::! ThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerValHisLeuSer 10850 : ACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTGCATTTGAGT : 10907 169 : GlyGlnPheArgIleLeuGlnTyrArgLeuSerAspLysTyrSerGlyGlnValGln<-> : 188 ||||||||||||||||||||||||||||||!!! ! !! !..!! !||| !||| GlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGlnTyrGlnIle 10908 : GGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAATATCAGATA : 10967 189 : AsnGlyLeuAspGlnLysSerAspLeuTyr<->LeuLysAspAsnAlaProAspValPhe : 206 !:: :::...:::|||! ||| ! ! !! ! !!..:!! !!!: !||| SerGluLysAsnMetGluSerValLeuGluAspCysThrArgArgSerTyrGluLysPhe 10968 : AgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGTAGATCTTACGAGAAATTT : 11027 207 : LysSerTyrIleArgGlnHisGlnAlaLeuIleThrTyrCysAsnGluLeuGlnGluVal : 226 |||||||||:!!||||||||||||.!!|||||| !|||! !.!.:!!|||:!!.!.||| LysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLysLeuGluHisVal 11028 : AAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAGCTTGAACACGTT : 11087 227 : PheGlyIleIleValLeuAlaLeuTyrSerGlnValMetThrPheSerMetLeuIleCys : 246 !:! !! !|||:!!||| .!!||||||:!: !||||||:!!||||||||| TyrThrLysIleIleLeu---------GlyGlnValLeuLeuPheSerValLeuIleCys 11088 : TACACGAAAATTATACTT---------GGGCAAGTGTTACTGTTCAGTGTGTTAATTTGC : 11138 247 : LeuAspGlyPheGlnValLeuLeuLeuAspLeuIleGlnArgLys{Va} >>>> Targ : 262 ||| !|||!:!|||:!!||||||:!!..!:!! !! ! ! !{..} LeuPheGlyTyrGlnIleLeuLeuValSerIleSerLeuProPro{Th}-- 11139 : CTCTTTGGTTATCAGATATTATTGGTTAGTATTTCACTTCCTCCA{AC}tg......... : 11190 263 : et Intron 1 >>>> {l}IlePhePhePheHisLeuLeuThrThrValCysGlnLeu : 275 1308 bp {!}||||||.!.|||! !:!!! ! !.!!:!! ! !||| ++{r}IlePheMetPheLeuIleCysGlyAlaMetValLeuLeu 11191 : ................ag{T}ATTTTCATGTTCCTCATATGTGGCGCCATGGTTTTATTG : 12533 276 : IleMetPheSerTyrSerCysAspCysIleIleArgGluSerValAsnLeuAlaThrAla : 295 .!!||||||!!!|||||||||:!! :!:|||..!:!!|||! !|||:!!||| !||| PheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAlaPheAla 12534 : TTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCTTTTGCG : 12593 296 : AlaPheSerGlyProTrpLeuLeuLeuProSerSerLysGlyIleAspAsnLeuLysLys : 315 |||!:!|||!.!! !||| ! !:!!|||! !!:!||| ! ! ! !!.|||::! ! AlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeuArgHis 12594 : GCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTACGGCAT : 12653 316 : AspPheIleMetLeuIleMetArgSerAsnLysProCysTyrIleSerGlyLeuGlyPhe : 335 |||!!.||||||:!!||| !||||||!..::! !|||! !:!:!!!!.! !|||||| AspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsnGlyPhe 12654 : GATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATGGATTT : 12713 336 : PheIleValSerLeuGluThrSerThr--{A} >>>> Target Intron 2 >>>> : 345 ||| !|||||||||||||||! !|||##{.} 357 bp PheProValSerLeuGluThrTyrThr##{G}++ + 12714 : TTCCCTGTGTCCTTAGAAACTTATACTAC{G}gt.........................a : 13101 346 : {rg}ValIleThrThrAlaGlySerTyrPheThrLeuLeuGlnGlnThrGlnSerAsnI : 364 {.!}::::::!:!||||||!.!||||||||||||||||||::!.!.!.! !..!:!!: -{lu}IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnValGluAspV 13102 : c{ag}attttgAGTACCGCGGCGTCGTACTTCACATTATTGAGAAATAACGTAGAAGATG : 13159 365 : le : 364 !! al 13160 : TA : 13161 vulgar: gi|805793961|ref|XP_012142611.1| 148 364 . KQ414828.1 10849 13161 + 312 M 39 117 G 0 3 M 10 30 G 0 3 M 35 105 G 3 0 M 26 78 S 0 2 5 0 2 I 0 1304 3 0 2 S 1 1 M 82 246 F 0 2 S 0 1 5 0 2 I 0 353 3 0 2 S 1 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10850 13161 312 + . gene_id 6 ; sequence gi|805793961|ref|XP_012142611.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 10850 11187 . + . KQ414828.1 exonerate:protein2genome:local exon 10850 11187 . + . insertions 6 ; deletions 3 KQ414828.1 exonerate:protein2genome:local splice5 11188 11189 . + . intron_id 1 ; splice_site "TG" KQ414828.1 exonerate:protein2genome:local intron 11188 12495 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12494 12495 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 12496 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12496 12745 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13102 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13101 13102 . + . intron_id 1 ; splice_site "ac" KQ414828.1 exonerate:protein2genome:local cds 13103 13161 . + . KQ414828.1 exonerate:protein2genome:local exon 13103 13161 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10850 13161 312 + . alignment_id 6 ; Query gi|805793961|ref|XP_012142611.1| ; Align 10850 149 117 ; Align 10970 188 30 ; Align 11003 198 105 ; Align 11108 236 78 ; Align 12497 263 246 ; Align 13105 346 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793961|ref|XP_012142611.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 230 Query range: 268 -> 359 Target range: 28550 -> 29233 269 : LeuThrThrValCysGlnLeuIleMetPheSerTyrSerCysAspCysIleIleArgGlu : 288 :!!||| !||| !!|||||| ||||||!!!||||||||||||||||||! !! !||| MetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGlu 28551 : ATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAA : 28608 289 : SerValAsnLeuAlaThrAlaAlaPheSerGlyProTrpLeuLeuLeuProSerSerLys : 308 |||:!!|||:!!||| !:!!!.!!:!:!!|||||||||:!! !||||||! ...||| SerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLys 28609 : AGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaa : 28668 309 : GlyIleAspAsnLeuLysLysAspPheIleMetLeuIleMetArgSerAsnLysProCys : 328 |||!:!||||||.!. !:!!||||||:!!|||:!!!..::!|||! ! PheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSer 28669 : tttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCC : 28728 329 : TyrIleSerGlyLeuGlyPhePheIleValSerLeuGluThrSerThrArg >>>> Ta : 346 ! !:!:!!!!.!! !||||||||| !:!!||||||||||||! !|||!:! SerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 28729 : TCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt....... : 28784 347 : rget Intron 1 >>>> ValIleThrThrAlaGlySerTyrPheThrLeuLeuGlnG : 359 410 bp :!!!!:!:!|||:!! !||||||||||||||||||:!!| ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysG 28785 : ..................agATCATGAGTACATCAATGTCGTATTTCACATTATTAAAAC : 29231 360 : ln : 359 || ln 29232 : AA : 29233 vulgar: gi|805793961|ref|XP_012142611.1| 268 359 . KQ414828.1 28550 29233 + 230 M 77 231 5 0 2 I 0 406 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28551 29233 230 + . gene_id 7 ; sequence gi|805793961|ref|XP_012142611.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 28551 28781 . + . KQ414828.1 exonerate:protein2genome:local exon 28551 28781 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 28782 28783 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 28782 29191 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 29190 29191 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 29192 29233 . + . KQ414828.1 exonerate:protein2genome:local exon 29192 29233 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28551 29233 230 + . alignment_id 7 ; Query gi|805793961|ref|XP_012142611.1| ; Align 28551 269 231 ; Align 29192 346 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793961|ref|XP_012142611.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 264 -> 346 Target range: 38514 -> 38760 265 : PhePheHisLeuLeuThrThrValCysGlnLeuIleMetPheSerTyrSerCysAspCys : 284 .!.||| !:!!||| !||| !!|||||| ||||||!!!||||||||||||||| MetPheAlaThrMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCys 38515 : ATGTTCGCAACGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGC : 38572 285 : IleIleArgGluSerValAsnLeuAlaThrAlaAlaPheSerGlyProTrpLeuLeuLeu : 304 |||! !! !||||||:!!|||:!!||| !:!!!.!!:!:!!|||||||||:!! !||| IleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeu 38573 : ATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTA : 38632 305 : ProSerSerLysGlyIleAspAsnLeuLysLysAspPheIleMetLeuIleMetArgSer : 324 |||! ...||| |||!:!||||||.!. !:!!||||||:!!|||:!! ProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAla 38633 : CCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCG : 38692 325 : AsnLysProCysTyrIleSerGlyLeuGlyPhePheIleValSerLeuGluThrSerThr : 344 !..::!|||! !! !:!:!!!!.!! !||||||||| !:!!||||||||||||! !||| ArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThr 38693 : AGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACT : 38752 345 : ArgVal : 346 !:!||| LysVal 38753 : AAGGTA : 38760 vulgar: gi|805793961|ref|XP_012142611.1| 264 346 . KQ414828.1 38514 38760 + 204 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38515 38760 204 + . gene_id 8 ; sequence gi|805793961|ref|XP_012142611.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38515 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38515 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38515 38760 204 + . alignment_id 8 ; Query gi|805793961|ref|XP_012142611.1| ; Align 38515 265 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793961|ref|XP_012142611.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 139 -> 259 Target range: 37859 -> 38216 140 : IleThrGlnValLeuAlaLeuCysProValGlyPheSerTyrPheSerLeuAspAsnVal : 159 ::!||||||!.!|||:!!:!!! !! !|||.!! !!!|||.!!!!!...||| ::: LeuThrGlnAlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIle 37860 : ctCACGCAGGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatt : 37917 160 : LeuCysIleIleAsnLeuHisIleAlaGlyGlnPheArgIleLeuGlnTyrArgLeuSer : 179 ... |||::: ||||||:!:||||||||||||||||||||||||||||||:!!:!! PhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAla 37918 : tttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCC : 37977 180 : Asp<-><->LysTyrSerGlyGlnValGlnAsnGlyLeuAspGlnLysSerAspLeuTyr : 197 :!! |||! ! !|||:!!!:!.!! !:!!! !!..!!!||| !! AsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSerThrAspGluLeu 37978 : AATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAATTA : 38037 198 : LeuLysAspAsnAlaProAspValPheLysSerTyrIleArgGlnHisGlnAlaLeuIle : 217 ! !..!!!:!!...! ! ! !||||||!:!! !|||!:!|||||||||||||||||| TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 38038 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATT : 38097 218 : ThrTyrCysAsnGluLeuGlnGluValPheGlyIleIleValLeuAlaLeuTyrSerGln : 237 !!:!||| !|||:!!||||||||| !:!!|||!.!||| .!!||| GluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeu---------GlyGln 38098 : GAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTC---------GGACAA : 38148 238 : ValMetThrPheSerMetLeuIleCysLeuAspGlyPheGlnValLeuLeuLeuAspLeu : 257 |||:!:! !||||||!!:|||||||||!!!! !! !!:!|||!.!||||||:!!..!:!! ValLeuMetPheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeuValSerIle 38149 : GTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGGTGAGTATC : 38208 258 : IleGln : 259 :!!!:: ValArg 38209 : GTTCGC : 38216 vulgar: gi|805793961|ref|XP_012142611.1| 139 259 . KQ414828.1 37859 38216 + 172 M 41 123 G 0 6 M 52 156 G 3 0 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37860 38216 172 + . gene_id 9 ; sequence gi|805793961|ref|XP_012142611.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37860 38216 . + . KQ414828.1 exonerate:protein2genome:local exon 37860 38216 . + . insertions 6 ; deletions 3 KQ414828.1 exonerate:protein2genome:local similarity 37860 38216 172 + . alignment_id 9 ; Query gi|805793961|ref|XP_012142611.1| ; Align 37860 140 123 ; Align 37989 181 156 ; Align 38145 236 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793961|ref|XP_012142611.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 7 -> 107 Target range: 8833 -> 9133 8 : IleTyrLeuGlnThrThrIleMetTyrHisSerLeuAspAspValGluAsnLeuIlePheGl : 28 |||:::::: ||| ||| ||| !!!!:!!! ! ! !! !!:!!:!!:!!!:!! IlePheIleIleThrIleIleSerTyrPheThrValValCysPhe***AspIleLeuTyrVa 8834 : atatttattattactattattagtTACTTTACAGTGGTTTGTTTCTAGGATATTCTTTACGT : 8894 29 : yLeuLeuAsnLeuLeuSerValLeuValProLeuIleLysLeuLeuAlaLeuLeuProArgL : 49 ! ! !|||||||||||||||:!!:!! !! !||||||||| !!.!:!!||| !!.!| lSerThrAsnLeuLeuSerValIleLeuThrThrIleLysLeuThrValValLeuIleHisL 8895 : TAGTACCAACTTACTGAGCGTGATCTTAACTACGATCAAGCTAACTGTCGTACTAATACACA : 8957 50 : ysLysLysLeuPheGlyLeuIleAlaTyrMetValArgAsnPheLeuLysAlaAspTyrAsp : 69 || !:!!!!!.!..!!||||||! !|||||| !..!:!!|||! !!!.!.!||||||||| ysValGluPheMetSerLeuIleAspTyrMetTyrGluHisPheTrpAsnValAspTyrAsp 8958 : AAGTGGAATTCATGAGTCTGATTGATTACATGTACGAACATTTCTGGAACGTGGATTACGAT : 9017 70 : AspPheGluThrSerIleLeuThrThrCysLysArgLysCysSerPhePheValCysSerSe : 90 ! !|||! !!!!|||:!: ...||||||::: |||! !.!!|||..!! ||| LeuHisGluLysArgIleMetAspAsnCysLysLysThrCysIleIlePheThrSerSerVa 9018 : CTTCACGAGAAAAGAATTATggataattgtaaaaaaactTGCATCATCTTCACTTCAAGCGT : 9080 91 : rValCysPheThrGluLeuThrIleValSerTyrValCysAlaProLeuLeu : 107 !..! !.!! ! !! !.!!|||:!!||||||:!!....!!|||!!!:!! lThrThrIleGlyIleCysAlaIleIleSerTyrIleAlaThrProPheIle 9081 : CACTACCATTGGCATATGCGCTATAATATCTTACATAGCGACACCGTTTATC : 9133 vulgar: gi|805793961|ref|XP_012142611.1| 7 107 . KQ414828.1 8833 9133 + 149 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 8834 9133 149 + . gene_id 10 ; sequence gi|805793961|ref|XP_012142611.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 8834 9133 . + . KQ414828.1 exonerate:protein2genome:local exon 8834 9133 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 8834 9133 149 + . alignment_id 10 ; Query gi|805793961|ref|XP_012142611.1| ; Align 8834 8 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793961|ref|XP_012142611.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 105 -> 146 Target range: 27339 -> 27462 106 : LeuLeuValAsnLeuPheMetAsnGluSerGluArgValLeuProPheLysMetTyrLeu : 125 :::|||...|||||| ! !|||||||||!!:|||! !! ! !||| ! |||!::!!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPhe 27340 : attttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTC : 27397 126 : AsnValProIleGlnAlaThrProTyrPheGluIleAlaTyrIleThrGlnValLeuAla : 145 :!!:!!|||:!!...!.!|||||||||:::||||||...||||||! !||||||||| !! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 27398 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 27457 146 : Leu : 146 :!! Ile 27458 : ATT : 27462 vulgar: gi|805793961|ref|XP_012142611.1| 105 146 . KQ414828.1 27339 27462 + 104 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27340 27462 104 + . gene_id 11 ; sequence gi|805793961|ref|XP_012142611.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27340 27462 . + . KQ414828.1 exonerate:protein2genome:local exon 27340 27462 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27340 27462 104 + . alignment_id 11 ; Query gi|805793961|ref|XP_012142611.1| ; Align 27340 106 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793965|ref|XP_012142612.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 543 Query range: 113 -> 333 Target range: 18039 -> 19909 114 : ThrLeuSerLeuCysThrIleGlyPheAlaTyrLeuCysIleAspAsnMetLeuCysIle : 133 ..!|||||||||! ! !|||||| ! ::!|||!!!|||...||||||...||||||||| ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIle 18040 : gtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgcttcgacaattttttatgcatC : 18097 134 : IleAsnLeuHisLeuAlaGlyGlnPheArgIleLeuGlnTyrArgLeuSerAspLysTyr : 153 !!:||||||||| !||| !|||||||||:!!||||||||||||:!!:!!:!!! ! ! MetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnTyrArgMetAlaAsnMetThr 18098 : ATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAATACCGAATGGCGAATATGACC : 18157 154 : ThrAlaGlnAspGlnAsnAsnValAspGlnGluSerLysAsnPheLeu<-><-><->Tyr : 170 ! !:!!|||:::...... ::::::... |||!.. !:!! ! ! AspLeuLysAspLysGluArgLysGluArgAsnMetLysThrSerValSerSerAlaCys 18158 : GATTTAAAGGacaaagagaggaaagagagaaatatgaAGACAAGTGTGAGTTCGGCGTGC : 18217 171 : LeuAlaAsnAsnAlaSerAspValPheLysSerTyrIleArgGlnHisGlnSerLeuMet : 190 !!!|||!...!...!! !:!!|||.!!|||..!||||||||||||||||||!:!|||!!: PheAlaThrGluCysTyrAsnValLeuLysAspTyrIleArgGlnHisGlnAsnLeuIle 18218 : TTTGCAACAGAATGTTACAACGTTCTCAAAGATTATATCAGACAGCATCAGAACCTGATT : 18277 191 : GluTyrCysAspGluValGluAlaValPheSerIleValLeuLeuIleGlnValLeuThr : 210 ! ||||||:!!:!!:!!||| !||||||!:!|||:!!:!!||| |||:!!|||! ! AlaTyrCysAsnLysLeuGluLysValPheAsnIleIleValLeuGlyGlnLeuLeuMet 18278 : GCTTATTGCAACAAACTCGAGAAAGTGTTCAATATCATTGTTCTGGGGCAATTGTTAATG : 18337 211 : PheSerMetLeuIleCysLeuAspGlyTyrLeuIleLeuVal >>>> Target Intr : 225 |||||||||||||||||||||||||||!:!! !||||||:!! 975 bp PheSerMetLeuIleCysLeuAspGlyPheGlnIleLeuMet++ 18338 : TTCAGCATGTTGATCTGTCTCGATGGATTTCAGATACTTATGgt................ : 18384 226 : on 1 >>>> AlaGluMetAlaGlnArg<->LysValMetPheIleCysHisPheAlaA : 240 |||.!.! !! ||| ::!:!!!!:||||||! !|||.!.!.!| ++AlaAsnThrProThrArgThrArgLeuIlePheIlePheHisIleGlyA 18385 : .........agGCAAATACACCTACCAGAACCCGACTGATTTTCATCTTTCACATAGGAG : 19405 241 : laThrValCysGlnLeuValMetPheSerTyrGlyCysAspCysIleIleArgGluSerT : 260 || !:!!|||||||||:!!||||||!!!|||.!!||||||||||||||||||||||||| laCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSerT 19406 : CATGCATGTGTCAATTGCTGATGTTTACCTACAGCTGCGACTGCATCATAAGAGAAAGCA : 19465 261 : hrLysLeuAlaThrAlaAlaTyrSerGlyProTrpLeuGlnLeuProProThrLysSerV : 280 ||!.. !||| !|||!.!||||||||||||||| !! |||||| !!:! !..!! hrSerThrAlaGluAlaValTyrSerGlyProTrpThrLeuLeuProMetSerAlaAspG 19466 : CGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGACACTTTTACCAATGAGCGCAGACG : 19525 281 : alArgGluValLysLysAspLeuIleMetLeuIleMetArgSerAsnIleProCysTyrL : 300 !!:! !:!!!:!|||||||||!!::!::!!||||||||||||!:!:!!||||||! !| lyLysMetIleArgLysAspLeuMetLeuValIleMetArgSerSerValProCysCysL 19526 : GAAAAATGATAAGGAAAGATTTGATGCTCGTTATCATGAGATCGAGCGTACCTTGTTGCT : 19585 301 : euThrGlySerGlyPhePheIleAlaSerLeuGluThrCysThrLys >>>> Target : 316 |||||!.!!!!|||||||||:!!!.!||||||||||||! !||| ! 2 euThrAlaArgGlyPhePheValValSerLeuGluThrTyrThrGly++ 19586 : TGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAACGTACACAGGGgt........... : 19635 317 : Intron 2 >>>> ValLeuThrThrAlaAlaSerTyrPheThrLeuLeuGlnGluTh : 330 23 bp ||||||!:!|||||||||||||||||||||||||||:!!:!!! ++ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuLysGlnAr 19636 : ..............agGTTTTAAGCACCGCAGCCTCATACTTTACGTTGCTGAAGCAAAG : 19898 331 : rGlnAsnAsn : 333 !..!.!.||| gSerGluAsn 19899 : ATCAGAGAAT : 19909 vulgar: gi|805793965|ref|XP_012142612.1| 113 333 . KQ414828.1 18039 19909 + 543 M 56 168 G 0 9 M 55 165 5 0 2 I 0 971 3 0 2 M 6 18 G 0 3 M 85 255 5 0 2 I 0 219 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 18040 19909 543 + . gene_id 1 ; sequence gi|805793965|ref|XP_012142612.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 18040 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18381 . + . insertions 9 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19909 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19909 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 18040 19909 543 + . alignment_id 1 ; Query gi|805793965|ref|XP_012142612.1| ; Align 18040 114 168 ; Align 18217 170 165 ; Align 19357 225 18 ; Align 19378 231 255 ; Align 19856 316 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793965|ref|XP_012142612.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 536 Query range: 49 -> 334 Target range: 2879 -> 5265 50 : GlyAsnLeuGlyLysAsnGluThrGluArgLeuLeuProPheLysMetTrpValAsnLeuPr : 70 !.!!:::::||||||||||||:::!!:||||||||| ! !!!!..!.|||:!!:!!||||| AlaSerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuPr 2880 : GCAAgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCC : 2940 71 : oMetGlnLysThrProTyrPheGluIleGlyTyrIleAlaGln >>>> Target Intro : 85 |!!: ! |||||||||:::|||||| ::: !||| 308 bp oIleThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2941 : GATAACCATCACACCATactatgaaatattatttacgaTACAGgt................. : 2987 86 : n 1 >>>> ThrAsnIleThrValAsnLeuMetProArgPheValLeuAsnTyrArgPheG : 102 ! !.!.||| ! ::: |||::: ||||||!:! ++LysGluIleGluAsn***ValLysAsnIlePheLeuProAsnTyrGlnLysV 2988 : ........agAAGGAAATTGAGaattaagttaaaaatatttttctacccAATTATCAAAAAG : 3344 103 : lnThrIleSerPheMetLysAsp<-><->ValPheLeuGlnThrLeuSerLeuCysThrIle : 120 |||:!:!.!! .!.! ! ||||||!!!!:: ! !! !|||! ! ! alThrValLysSerPheThrProValTyrValPhePheArgTyrArgPheLeuSer***Cys 3345 : TTACAGTGAAATCGTTTACACCAGTTTATGTCTTTTTTCGCTACAGATTTTTATCATAATGT : 3404 121 : GlyPheAla-----TyrLeuCysIleAspAsnMetLeuCysIleIleAsnLeuHisLeuAla : 139 !||||||#####||||||||||||||||||.!.||||||!!:|||||||||||| !||| ThrPheAla#####TyrLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAla 3405 : ACGTTTGCATAAGCTACCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCT : 3466 140 : GlyGlnPheArgIleLeuGlnTyrArgLeuSerAspLysTyrThrAlaGlnAspGlnAsnAs : 160 !||||||||||||||||||||||||||||||:!! !! ! !|||.!.!!:!::!:: ThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSer-- 3467 : ACTCAATTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgc-- : 3529 161 : nValAspGlnGluSerLysAsnPheLeuTyrLeuAlaAsnAsnAlaSerAspValPheLysS : 181 |||::: ||||||... ! !! ! !:!!:!!.!...!! !! ! !||||||! ----AspLysIleSerLysLysThrProSerAsnSerAspGluCysTyrAlaLysPheLysA 3530 : ----gataaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAA : 3586 182 : erTyrIleArgGlnHisGlnSerLeuMetGluTyrCysAspGluValGluAlaValPheSer : 201 :!! !|||!:!|||||||||:!!|||!!:|||||||||:!!:!!:!!:!!! !||||||.!! snCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnLysLeuGlnGluValPheGly 3587 : ATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACAAACTTCAAGAGGTGTTCGGT : 3646 202 : IleValLeuLeuIleGlnValLeuThrPheSerMetLeuIleCysLeuAspGlyTyrLeuIl : 222 ||| !!:!!||| !||||||||| !||||||:!!|||!!:||||||||||||||||||:! IlePheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAspGlyTyrLeuVa 3647 : ATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGGATATTTGGT : 3709 223 : eLeu >>>> Target Intron 2 >>>> ValAlaGluMetAlaGlnArgLysValMe : 233 ::!! 457 bp ! !! ! !..!!:!::::!!! lMet++ ++GluAspThrProIleMetGlnArgLeuTh 3710 : GATGgt.........................agGAAGATACTCCCATTATGCAGCGCCTTAC : 4199 234 : tPheIleCysHisPheAlaAlaThrValCysGlnLeuValMetPheSerTyrGlyCysAspC : 254 |||:!:! !|||.!..!!!.! !:!!|||||||||:!!||||||!!!|||.!!||||||| rPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspC 4200 : TTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGATGTTCACCTACAGCTGCGATT : 4262 255 : ysIleIleArgGluSerThrLysLeuAlaThrAlaAlaTyrSerGlyProTrpLeuGlnLeu : 274 ||:!:|||||||||||| !!!.:!!|||!.!||| !|||..! !! !!|||:!!!!.||| ysLeuIleArgGluSerLeuAsnValAlaAsnAlaIleTyrAspCysSerTrpIleHisLeu 4263 : GCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATATACGACTGCTCGTGGATTCACTTG : 4322 275 : ProProThrLysSerValArgGluValLysLysAspLeuIleMetLeuIleMetArgSerAs : 295 ||| ! !!:!|||! !||| !:!!::!|||||||||! !.!.:!!||| ||||||!. ProMetAspArgSerGlyArgMetLeuArgLysAspLeuThrPheValIleGlyArgSerAr 4323 : CCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAG : 4385 296 : nIleProCysTyrLeuThrGlySerGlyPhePheIleAlaSerLeuGluThrCysThrLys : 316 .:!!||||||! !||||||!.!!!!||||||||| !!.!||||||||||||! !|||..! gValProCysCysLeuThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSer+ 4386 : AGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGg : 4448 317 : >>>> Target Intron 3 >>>> ValLeuThrThrAlaAlaSerTyrPheThrLeuL : 327 761 bp :!!|||!:!||||||||||||||||||||||||| + ++IleLeuSerThrAlaAlaSerTyrPheThrLeuL 4449 : t.........................agATTTTAAGTACCGCAGCGTCATACTTCACACTGC : 5242 328 : euGlnGluThrGlnAsnAsnIle : 334 ||!:!.!. !:!! .!.||| euArgAsnGlnGluAlaGluIle 5243 : TACGAAACCAAGAAGCAGAAATA : 5265 vulgar: gi|805793965|ref|XP_012142612.1| 49 334 . KQ414828.1 2879 5265 + 536 M 35 105 5 0 2 I 0 304 3 0 2 M 25 75 G 0 6 M 14 42 F 0 5 M 36 108 G 2 0 M 62 186 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 757 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2880 5265 536 + . gene_id 2 ; sequence gi|805793965|ref|XP_012142612.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2880 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2880 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3292 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3291 3292 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3293 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3293 3714 . + . insertions 6 ; deletions 2 ; frameshifts 5 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 5208 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 5207 5208 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 5209 5265 . + . KQ414828.1 exonerate:protein2genome:local exon 5209 5265 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2880 5265 536 + . alignment_id 2 ; Query gi|805793965|ref|XP_012142612.1| ; Align 2880 50 105 ; Align 3293 85 75 ; Align 3374 110 42 ; Align 3421 124 108 ; Align 3529 162 186 ; Align 4172 224 276 ; Align 5209 316 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793965|ref|XP_012142612.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 375 Query range: 120 -> 334 Target range: 10852 -> 13161 121 : GlyPheAlaTyrLeuCysIleAspAsnMetLeuCysIleIleAsnLeuHisLeuAlaGly : 140 |||.!!..!|||!!!|||.!!||||||!!:!!!||||||!!:!:!:!!||||||::!||| GlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerValHisLeuSerGly 10853 : GGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTGCATTTGAGTGGC : 10910 141 : GlnPheArgIleLeuGlnTyrArgLeuSerAspLysTyrThrAlaGlnAspGlnAsnAsn : 160 |||||||||||||||||||||||||||!!! ! !! ! !!.!||| !!|||! !:: GlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGlnTyrGlnIleSer 10911 : CAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAATATCAGATAAgc : 10970 161 : ValAspGlnGluSerLysAsnPheLeuTyrLeuAlaAsnAsnAlaSerAspValPheLys : 180 ... ...... !!. ! !!! !.!!..!!..:!!! !!!: !|||||| GluLysAsnMetGluSerValLeuGluAspCysThrArgArgSerTyrGluLysPheLys 10971 : gagaaaaatatggaatcTGTATTGGAAGACTGTACACGTAGATCTTACGAGAAATTTAAG : 11030 181 : SerTyrIleArgGlnHisGlnSerLeuMetGluTyrCysAspGluValGluAlaValPhe : 200 ||||||:!!||||||||||||!!!|||!!:!!:|||! !!!::!!:!!||| !|||!:! SerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLysLeuGluHisValTyr 11031 : AGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAGCTTGAACACGTTTAC : 11090 201 : SerIleValLeuLeuIleGlnValLeuThrPheSerMetLeuIleCysLeuAspGlyTyr : 220 !!!! !:!!:!!||| ||||||||| !||||||:!!|||||||||||| !|||||| ThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIleCysLeuPheGlyTyr 11091 : ACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATTTGCCTCTTTGGTTAT : 11150 221 : LeuIleLeuValAlaGluMetAla{G} >>>> Target Intron 1 >>>> {ln} : 229 ! !||||||:!!!.!...!!::!!{!} 1308 bp { !} GlnIleLeuLeuValSerIleSer{P}-+ -+{ro} 11151 : CAGATATTATTGGTTAGTATTTCA{C}tt.........................tg{CA} : 12486 230 : ArgLysValMetPheIleCysHisPheAlaAlaThrValCysGlnLeuValMetPheSer : 249 |||::: !!!:|||!!:! !! !.!...!!.!.!!:!! ! !||| !!||||||!!! ArgArgSerIlePheMetPheLeuIleCysGlyAlaMetValLeuLeuPheMetPheThr 12487 : AGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTTTTATTGTTTATGTTCACC : 12545 250 : TyrGlyCysAspCysIleIleArgGluSerThrLysLeuAlaThrAlaAlaTyrSerGly : 269 |||.!!|||:!! :!:|||..!:!!||| !!!.:!!||| !||||||||||||!.! TyrSerCysAsnMetValIleGluGlnSerAspAsnIleAlaPheAlaAlaTyrSerAla 12546 : TACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCTTTTGCGGCGTATTCGGCA : 12605 270 : ProTrpLeuGlnLeuProProThrLysSerValArgGluValLysLysAspLeuIleMet : 289 ! !||| ! :!!||| !!.!|||!!!! !!:!:!!:!!::! ! |||||||||||| LeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeuArgHisAspLeuIleMet 12606 : CTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTACGGCATGATTTGATAATG : 12665 290 : LeuIleMetArgSerAsnIleProCysTyrLeuThrGlySerGlyPhePheIleAlaSer : 309 :!!||| !||||||!.. ! !|||! !||||||!.!!:!||||||||| !!.!||| ValIleGlyArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePheProValSer 12666 : GTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATGGATTTTTCCCTGTGTCC : 12725 310 : LeuGluThrCysThr--{L} >>>> Target Intron 2 >>>> {ys}ValLeuT : 318 |||||||||! !|||##{:} 357 bp {!!}:::|||! LeuGluThrTyrThr##{G}++ +-{lu}IleLeuS 12726 : TTAGAAACTTATACTAC{G}gt.........................ac{ag}attttgA : 13111 319 : hrThrAlaAlaSerTyrPheThrLeuLeuGlnGluThrGlnAsnAsnIle : 334 :!|||||||||||||||||||||||||||::!.!.!.! !.!.:!!:!! erThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnValGluAspVal 13112 : GTACCGCGGCGTCGTACTTCACATTATTGAGAAATAACGTAGAAGATGTA : 13161 vulgar: gi|805793965|ref|XP_012142612.1| 120 334 . KQ414828.1 10852 13161 + 375 M 108 324 S 0 1 5 0 2 I 0 1304 3 0 2 S 1 2 M 85 255 F 0 2 S 0 1 5 0 2 I 0 353 3 0 2 S 1 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10853 13161 375 + . gene_id 3 ; sequence gi|805793965|ref|XP_012142612.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 10853 11177 . + . KQ414828.1 exonerate:protein2genome:local exon 10853 11177 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 11178 11179 . + . intron_id 1 ; splice_site "TT" KQ414828.1 exonerate:protein2genome:local intron 11178 12485 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12484 12485 . + . intron_id 0 ; splice_site "TG" KQ414828.1 exonerate:protein2genome:local cds 12486 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12486 12745 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13102 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13101 13102 . + . intron_id 1 ; splice_site "ac" KQ414828.1 exonerate:protein2genome:local cds 13103 13161 . + . KQ414828.1 exonerate:protein2genome:local exon 13103 13161 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10853 13161 375 + . alignment_id 3 ; Query gi|805793965|ref|XP_012142612.1| ; Align 10853 121 324 ; Align 12488 230 255 ; Align 13105 316 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793965|ref|XP_012142612.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 284 Query range: 0 -> 84 Target range: 16291 -> 17929 1 : MetValArgAsnPhePheHisAlaAsnTyrAspAspTyrGluThrLeuValLeuIleAsn : 20 :!: !|||.!.|||!!.||||||:!!|||||||||||||||! ! !:!!|||:!!..! LeuGlnArgGluPheLeuHisAlaAspTyrAspAspTyrGluLysLysIleLeuLeuGly 16292 : CTACAACGAGAATTCTTGCATGCAGATTACGACGACTACGAGAAAAAGATTTTGCTCGGT : 16349 21 : CysLysArgLysCysSerPhePheAlaCysThrPheValCysPheThrGluLeuThrIle : 40 |||:!!|||:!!|||!!!||||||!.!||| !|||..! !||||||:!! !|||:!! CysGlnArgGlnCysThrPhePheValCysPhePheThrLeuPheThrLysGlyThrVal 16350 : TGCCAACGTCAATGTACCTTCTTCGTTTGTTTCTTCACACTTTTCACTAAAGGAACTGTT : 16409 41 : IleSerTyrIlePheThrProLeuIle{G} >>>> Target Intron 1 >>>> { : 50 |||||||||||| !!!.!|||||||||{!} 1386 bp { IleSerTyrIleValAsnProLeuIle{A}++ ++{ 16410 : ATCTCGTACATCGTTAATCCGCTTATT{G}gt.........................ag{ : 17826 51 : ly}AsnLeuGlyLysAsnGluThrGluArgLeuLeuProPheLysMetTrpValAsnLeu : 69 .!}|||:::||||||||||||:!!||||||:!!|||||||||!!.||||||||||||||| la}AsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpValAsnLeu 17827 : ca}aatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTCAACTTG : 17882 70 : ProMetGlnLysThrProTyrPheGluIleGlyTyrIleAlaGln : 84 |||:!:..!! !|||||||||!:!|||||| ::: ||| ProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln 17883 : CCATTATCAATGACGCCATATTACgaaataactttttcattaCAG : 17929 vulgar: gi|805793965|ref|XP_012142612.1| 0 84 . KQ414828.1 16291 17929 + 284 M 49 147 S 0 1 5 0 2 I 0 1382 3 0 2 S 1 2 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 16292 17929 284 + . gene_id 4 ; sequence gi|805793965|ref|XP_012142612.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 16292 16439 . + . KQ414828.1 exonerate:protein2genome:local exon 16292 16439 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 16440 16441 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 16440 17825 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 17824 17825 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 17826 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17826 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 16292 17929 284 + . alignment_id 4 ; Query gi|805793965|ref|XP_012142612.1| ; Align 16292 1 147 ; Align 17828 51 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793965|ref|XP_012142612.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 265 Query range: 47 -> 227 Target range: 22307 -> 23067 48 : LeuIleGlyAsnLeuGlyLysAsnGluThrGluArgLeuLeuProPheLysMetTrpVal : 67 ::::::...||||||||||||||||||:!!!!:||| !! ! !!:! ! ||||||:!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 22308 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 22365 68 : AsnLeuProMetGlnLysThrProTyrPheGluIleGlyTyrIleAlaGlnThrAsnIle : 87 :!!||||||:!:... !|||||||||:::|||||| |||||| !|||..! ! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 22366 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 22425 88 : ThrValAsnLeuMetProArgPheValLeuAsnTyrArgPheGlnThrIleSerPheMet : 107 ! ! !!::: !... |||::: ::: :::::: :::... IlePheSerArgGlnThrIlePheIleTyr***HisTyrTyrArgGluLysAsnIle*** 22426 : ATTTTCTCAAGGCaaactatatttatatattaacattattatagagaaaaaaatatttaa : 22485 108 : LysAspValPheLeuGln{T} >>>> Target Intron 1 >>>> {hr}LeuSer : 116 :!: !! !::!{|} 220 bp {||}|||||| CysGlu******GluArg{T}++ -+{hr}LeuSer 22486 : tgcgAATAATAAGAAAGA{A}gt.........................gg{CT}TTATCT : 22732 117 : LeuCysThrIleGlyPheAlaTyrLeuCysIleAspAsnMetLeuCysIleIleAsnLeu : 136 :!!! ! !:!!.!! ..!|||||||||...||| :::... |||::: ||| ValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIlePhePheIleLeuCysLeu 22733 : GTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatttttttcattttgtgtCTA : 22792 137 : HisLeuAlaGlyGlnPheArgIleLeuGlnTyrArgLeuSerAspLysTyrThrAlaGln : 156 |||:!!||||||||||||||||||||||||||||||:!!:!!:!! !! ! !... HisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSer 22793 : CACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGC : 22852 157 : AspGlnAsnAsnValAspGlnGluSerLysAsnPheLeuTyrLeuAlaAsnAsnAlaSer : 176 !!: ! !!. !..!:!!.!. !!!..!.. ! !! ! !:!!.!.!!...!! ! GluIleValLysSerSerGluAsnProSerThrAspGluLeuTyrSerGluLysCysTyr 22853 : GAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAATTATACTCAGAGAAATGTTAC : 22912 177 : AspValPheLysSerTyrIleArgGlnHisGlnSerLeuMetGluTyrCysAspGluVal : 196 ! !||||||!:!! !|||!:!|||||||||:!!|||!!:|||!:!|||! !:!! IleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeu 22913 : ATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTC : 22972 197 : GluAlaValPheSerIleValLeuLeuIleGlnValLeuThrPheSerMetLeuIleCys : 216 |||! !||||||!!!:!!:!!:!!||| !|||||||||! !! !|||!!:||||||||| GluGluValPheThrValIleValLeuGlyGlnValLeuMetSerSerIleLeuIleCys 22973 : GAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCTAATGTCTAGCATATTAATTTGC : 23032 217 : LeuAspGlyTyrLeuIleLeuValAlaGluMet : 227 !!! !||||||! !:!!|||:!!!.!...!!: PheIleGlyTyrGlnValLeuLeuValSerIle 23033 : TTCATCGGGTATCAAGTACTCCTGGTGAGTATC : 23067 vulgar: gi|805793965|ref|XP_012142612.1| 47 227 . KQ414828.1 22307 23067 + 265 M 66 198 S 0 1 5 0 2 I 0 216 3 0 2 S 1 2 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22308 23067 265 + . gene_id 5 ; sequence gi|805793965|ref|XP_012142612.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22308 22506 . + . KQ414828.1 exonerate:protein2genome:local exon 22308 22506 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22507 22508 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22507 22726 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22725 22726 . + . intron_id 0 ; splice_site "GG" KQ414828.1 exonerate:protein2genome:local cds 22727 23067 . + . KQ414828.1 exonerate:protein2genome:local exon 22727 23067 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22308 23067 265 + . alignment_id 5 ; Query gi|805793965|ref|XP_012142612.1| ; Align 22308 48 198 ; Align 22729 115 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793965|ref|XP_012142612.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 260 Query range: 47 -> 229 Target range: 37450 -> 38216 48 : LeuIleGlyAsnLeuGlyLysAsnGluThrGluArgLeuLeuProPheLysMetTrpVal : 67 ::: ...||||||||||||||||||:!!!!:||| !! ! !!:! ! ||||||:!! IleSerAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 37451 : atttcagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 37508 68 : AsnLeuProMetGlnLysThrProTyrPheGluIleGlyTyrIleAlaGlnThrAsnIle : 87 :!!||||||:!:...! !|||||||||:::|||||| |||||| !|||..! ! AspLeuProLeuSerIleThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 37509 : GATCTACCATTATCCATAACAccatattatgaaattacttACATAATACAGGTATTACCA : 37568 88 : ThrValAsnLeuMetProArgPheValLeuAsnTyrArgPheGlnThrIleSerPheMet : 107 ! ! !!::: !... |||::: ::: :::::: :::||| IlePheSerArgGlnThrIlePheIleTyr***HisTyrTyrArgGlnLysAsnPhe*** 37569 : ATTTTCTCAAGGCaaactatatttatatattaacattattatagacagaaaaatttttaa : 37628 108 : LysAspValPheLeuGln{T} >>>> Target Intron 1 >>>> {hr}LeuSer : 116 :!: !! !::!{|} 220 bp {||}|||||| CysGlu******GluArg{T}++ -+{hr}LeuSer 37629 : tgcgAATAATAAGAAAGA{A}gt.........................gg{CT}TTATCT : 37875 117 : LeuCysThrIleGlyPheAlaTyrLeuCysIleAspAsnMetLeuCysIleIleAsnLeu : 136 :!!! ! !:!!.!! ..!|||||||||...||| :::... |||::: ||| ValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIlePhePheIleLeuCysLeu 37876 : GTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatttttttcattttgtgtCTA : 37935 137 : HisLeuAlaGlyGlnPheArgIleLeuGlnTyrArgLeuSerAspLysTyrThrAlaGln : 156 |||:!!||||||||||||||||||||||||||||||:!!:!!:!! !! ! !... HisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSer 37936 : CACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGC : 37995 157 : AspGlnAsnAsnValAspGlnGluSerLysAsnPheLeuTyrLeuAlaAsnAsnAlaSer : 176 !!: ! !!. !..!:!!.!. !!!..!.. ! !! ! !:!!.!.!!...!! ! GluIleValLysSerSerGluAsnProSerThrAspGluLeuTyrSerGluLysCysTyr 37996 : GAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAATTATACTCAGAGAAATGTTAC : 38055 177 : AspValPheLysSerTyrIleArgGlnHisGlnSerLeuMetGluTyrCysAspGluVal : 196 ! !||||||!:!! !|||!:!|||||||||:!!|||!!:|||!:!|||! !:!! IleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeu 38056 : ATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTC : 38115 197 : GluAlaValPheSerIleValLeuLeuIleGlnValLeuThrPheSerMetLeuIleCys : 216 |||! !||||||!!!:!!:!! !||| !|||||||||! !||||||!!:||||||||| GluGluValPheThrValIleAlaLeuGlyGlnValLeuMetPheSerIleLeuIleCys 38116 : GAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCTAATGTTTAGCATACTAATTTGC : 38175 217 : LeuAspGlyTyrLeuIleLeuValAlaGluMetAlaGln : 229 !!!! !! !|||! ! !|||:!!!.!...!!:!.!!:: PheValValTyrGlnAlaLeuLeuValSerIleValArg 38176 : TTCGTCGTGTATCAAGCACTCCTGGTGAGTATCGTTCGC : 38216 vulgar: gi|805793965|ref|XP_012142612.1| 47 229 . KQ414828.1 37450 38216 + 260 M 66 198 S 0 1 5 0 2 I 0 216 3 0 2 S 1 2 M 115 345 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37451 38216 260 + . gene_id 6 ; sequence gi|805793965|ref|XP_012142612.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37451 37649 . + . KQ414828.1 exonerate:protein2genome:local exon 37451 37649 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37650 37651 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37650 37869 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37868 37869 . + . intron_id 0 ; splice_site "GG" KQ414828.1 exonerate:protein2genome:local cds 37870 38216 . + . KQ414828.1 exonerate:protein2genome:local exon 37870 38216 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37451 38216 260 + . alignment_id 6 ; Query gi|805793965|ref|XP_012142612.1| ; Align 37451 48 198 ; Align 37872 115 345 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793965|ref|XP_012142612.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 229 Query range: 112 -> 227 Target range: 32801 -> 33146 113 : GlnThrLeuSerLeuCysThrIleGlyPheAlaTyrLeuCysIleAspAsnMetLeuCys : 132 |||.!!||||||:!!! ! !:!!||| ! ..!|||||||||...||||||:::... GlnAlaLeuSerValTyrGlnValGlyValCysTyrLeuCysPheAspAsnIlePhePhe 32802 : CAGGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCTttgataacatttttttc : 32859 133 : IleIleAsnLeuHisLeuAlaGlyGlnPheArgIleLeuGlnTyrArgLeuSerAspLys : 152 |||::: !||||||:!!||||||||||||||||||||||||||||||:!!:!!:!! ! IleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnVal 32860 : attatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTG : 32919 153 : TyrThrAlaGlnAspGlnAsnAsnValAspGlnGluSerLysAsnPheLeuTyrLeuAla : 172 ! ! !...!!: ! !!. !:!!.!..!.!!!!..!.. ! !! ! !:!! SerGlyLeuSerGluIleValLysSerAsnAspAsnThrSerThrAlaGluLeuTyrSer 32920 : TCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACAAGCACGGCTGAATTATACTCA : 32979 173 : AsnAsnAlaSerAspValPheLysSerTyrIleArgGlnHisGlnSerLeuMetGluTyr : 192 .!.!!...!! ! ! !||||||!:!! !|||!:!|||||||||:!!|||:::|||::: GluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPhe 32980 : GAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTaattgaattt : 33039 193 : CysAspGluValGluAlaValPheSerIleValLeuLeuIleGlnValLeuThrPheSer : 212 |||::: ::!|||! !||||||!!!:!!:!!:!!||| !|||||||||! !|||||| CysGluIleLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMetPheSer 33040 : tgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTAATGTTTAGC : 33099 213 : MetLeuIleCysLeuAspGlyTyrLeuIleLeuValAlaGluMet : 227 !!::!!||||||!!!! !|||||| !:!!|||:!!!.!...!!: IleIleIleCysPheAlaGlyTyrGluValLeuLeuValSerIle 33100 : ATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGGTGAGTATC : 33146 vulgar: gi|805793965|ref|XP_012142612.1| 112 227 . KQ414828.1 32801 33146 + 229 M 115 345 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32802 33146 229 + . gene_id 7 ; sequence gi|805793965|ref|XP_012142612.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 32802 33146 . + . KQ414828.1 exonerate:protein2genome:local exon 32802 33146 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32802 33146 229 + . alignment_id 7 ; Query gi|805793965|ref|XP_012142612.1| ; Align 32802 113 345 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793965|ref|XP_012142612.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 47 -> 84 Target range: 27339 -> 27450 48 : LeuIleGlyAsnLeuGlyLysAsnGluThrGluArgLeuLeuProPheLysMetTrpVal : 67 ::::::...||||||||||||||||||:!!!!:||| !! ! !||| ! |||||| !! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPhe 27340 : attttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTC : 27397 68 : AsnLeuProMetGlnLysThrProTyrPheGluIleGlyTyrIleAlaGln : 84 :!!||||||:!:... !|||||||||:::|||||| |||||| !||| AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGln 27398 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAG : 27450 vulgar: gi|805793965|ref|XP_012142612.1| 47 84 . KQ414828.1 27339 27450 + 111 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27340 27450 111 + . gene_id 8 ; sequence gi|805793965|ref|XP_012142612.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27340 27450 . + . KQ414828.1 exonerate:protein2genome:local exon 27340 27450 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27340 27450 111 + . alignment_id 8 ; Query gi|805793965|ref|XP_012142612.1| ; Align 27340 48 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793965|ref|XP_012142612.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 47 -> 84 Target range: 32386 -> 32497 48 : LeuIleGlyAsnLeuGlyLysAsnGluThrGluArgLeuLeuProPheLysMetTrpVal : 67 ::::::...||||||||||||||||||:!!!!:||| !! ! !!:! ! ||||||:!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 32387 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 32444 68 : AsnLeuProMetGlnLysThrProTyrPheGluIleGlyTyrIleAlaGln : 84 :!!||||||:!:... !|||||||||:::|||||| |||||| !||| AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGln 32445 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAG : 32497 vulgar: gi|805793965|ref|XP_012142612.1| 47 84 . KQ414828.1 32386 32497 + 110 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32387 32497 110 + . gene_id 9 ; sequence gi|805793965|ref|XP_012142612.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 32387 32497 . + . KQ414828.1 exonerate:protein2genome:local exon 32387 32497 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32387 32497 110 + . alignment_id 9 ; Query gi|805793965|ref|XP_012142612.1| ; Align 32387 48 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793982|ref|XP_012142616.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 419 Query range: 64 -> 285 Target range: 3360 -> 5250 65 : TyrValIleThrProIlePheAspIleAsnSerValCysValTyrIleIleGlyMetGlyTy : 85 |||..!! ! ! !:!!|||...:!!.!.! ! !! !:!! !:!! !!!!:.!!|| TyrThrSerLeuCysLeuPheSerLeuGlnIlePheIleIleMetTyrValCysIleSerTy 3361 : TACACCAGTTTATGTCTTTTTTCGCTACAGATTTTTATCATAATGTACGTTTGCATAAGCTA : 3421 86 : rValCysProAspIleLeuMetCysLeuLeuAsnValHisAlaValGlyGlnPheArgIleL : 106 |:!!||| !|||! !!!!:!!|||:!!:!!|||:!!|||.!!!.! !||||||||||||| rLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleL 3422 : CCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATAT : 3484 107 : euGlnTyrArgMetLeuAsnPheTrpAsnIleValCysLysAspSerAspProGluLysTyr : 126 |||||||||||:!!! !||| ! !! ..! ! ! :::...... ...||| euGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAspLysIleSerLysLys 3485 : TGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaa : 3544 127 : Thr<-><-><-><->GluGluCysTyrMetAlaLeuLysLysCysIleArgGlnHisGlnLe : 143 ||| !!:||||||||| !!!!|||!!.||||||!:!||||||||| ThrProSerAsnSerAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAl 3545 : acaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGC : 3607 144 : uIleIleValPheCysAsnMetMetGluSerValTyrSerThrThrIlePheIleHisValT : 164 !:!!|||! !!:!||||||! :!::!!..!|||!:!.!!! ! !:!:.!! !!!.||| aLeuIleGluTyrCysAsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValL 3608 : ACTCATAGAATACTGTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGT : 3670 165 : hrIleValSerValLeuMetCysLeuAspTrpTyrGluIleLeu >>>> Target Intr : 179 !:!! !!|||:!!||||||||||||||| ! ||| !:!::!! 457 bp euLeuPheSerLeuLeuMetCysLeuAspGlyTyrLeuValMet++ 3671 : TGCTCTTCAGTTTGTTAATGTGCCTCGATGGATATTTGGTGATGgt................ : 3717 180 : on 1 >>>> LeuAlaAsnProGlyAsnAlaMetArgLeuIlePheIlePheHisMetLeu : 195 !! !!.!||| ! ! !..!||||||! !|||:!:||||||:!: ! ++GluAspThrPro---IleMetGlnArgLeuThrPheLeuPheHisLeuThr 3718 : .........agGAAGATACTCCC---ATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACG : 4217 196 : GlySerLeuGlyHisLeuCysIleLeuThrCysSerCysHisTyrMetMetGluGluSerSe : 216 |||!!!||| !!!!.|||! !!:!!!|||! !|||||| !!! !:!!!!:..!||||||! GlyCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLe 4218 : GGATGCCTGTGCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTT : 4280 217 : rAsnIleValArgAlaAlaTyrGlyGlySerTrpSerSerLeuProMetAsnGlnSerGlyA : 237 !|||:!:!.!!.!||| !|||! ! !!||||||! ! !|||||||||:!!::!||||||| uAsnValAlaAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyA 4281 : GAACGTGGCCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGC : 4343 238 : rgSerLeuArgThrAlaMetMetPheIleMetIleArgAlaMetLysProCysCysIleThr : 257 ||! !||||||! !! !:!!! |||:!!!!: !|||:!!! !|||||||||:!!||| rgMetLeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThr 4344 : GAATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACT : 4403 258 : AlaAlaGlyPhePheProValSerLeuGluThrPheThrThr >>>> Target Intron : 272 |||..!|||||||||||||||||||||||||||!:!|||:!! 761 bp AlaCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 4404 : GCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt.................. : 4450 273 : 2 >>>> IleLeuSerSerThrPheSerTyrPheThrLeuMetArgAsn : 285 |||||||||!!!.!! |||||||||||||||:!:|||||| ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsn 4451 : .......agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTACGAAAC : 5250 vulgar: gi|805793982|ref|XP_012142616.1| 64 285 . KQ414828.1 3360 5250 + 419 M 63 189 G 0 12 M 51 153 5 0 2 I 0 453 3 0 2 M 4 12 G 1 0 M 88 264 5 0 2 I 0 757 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 3361 5250 419 + . gene_id 1 ; sequence gi|805793982|ref|XP_012142616.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 3361 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3361 3714 . + . insertions 12 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 5208 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 5207 5208 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 5209 5250 . + . KQ414828.1 exonerate:protein2genome:local exon 5209 5250 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 3361 5250 419 + . alignment_id 1 ; Query gi|805793982|ref|XP_012142616.1| ; Align 3361 65 189 ; Align 3562 128 153 ; Align 4172 179 12 ; Align 4184 184 264 ; Align 5209 272 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793982|ref|XP_012142616.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 321 Query range: 120 -> 286 Target range: 32960 -> 34304 121 : SerAspProGluLysTyrThrGluGluCysTyrMetAlaLeuLysLysCysIleArgGln : 140 ||| !!||| !|||:!!|||:!!||||||!!: !!!!|||!!.||||||!:!||| SerThrAlaGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGln 32961 : AGCACGGCTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAA : 33018 141 : HisGlnLeuIleIleValPheCysAsnMetMetGluSerValTyrSerThrThrIlePhe : 160 |||||| !:!:||| ||||||...::::::|||..!|||!:!!!!..!! !:!!.!! HisGlnAlaLeuIleGluPheCysGluIleLeuGluGluValPheThrValIleValLeu 33019 : CATCAGGCACTaattgaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTC : 33078 161 : IleHisValThrIleValSerValLeuMetCysLeuAspTrpTyrGluIleLeuLeu > : 180 !!!.||| !!!: !!|||:!!:!!!!:|||!!!! ! !!||||||:!!|||||| GlyGlnValLeuMetPheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeu++ 33079 : GGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGgt. : 33140 181 : >>> Target Intron 1 >>>> AlaAsnProGlyAsnAlaMetArgLeuIlePheI : 191 406 bp !!.. ! ! !! ! !|||:!! !|||! ++IleThrLeuProPheGluSerArgValAlaPheT 33141 : ........................agATAACGTTACCATTTGAATCGCGCGTTGCTTTCA : 33577 192 : lePheHisMetLeuGlySerLeuGlyHisLeuCysIleLeuThrCysSerCysHisTyrM : 211 ! ! !:!!:!! !.!!:!!.!!!!.|||!! !!:!!!|||! !||||||:!!! !! hrCysPheLeuIleThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAsnCysI 33578 : CGTGCTTCTTGATTACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCAATTGCA : 33637 212 : etMetGluGluSerSerAsnIleValArgAlaAlaTyrGlyGlySerTrpSerSerLeuP : 231 !:! !|||||| !||||||!.!..!:!!!.!|||!.!||| !!|||! !!:!|||| leThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuP 33638 : TAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTAC : 33697 232 : roMetAsnGlnSerGlyArgSerLeuArgThrAlaMetMetPheIleMetIleArgAlaM : 251 |||||:::::: |||::: ||||||! !! !:!:... ! :!!!!::!:||||||! roMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaA 33698 : CAATggataaatttggaaaactgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGA : 33757 252 : etLysProCysCysIleThrAlaAlaGlyPhePheProValSerLeuGluThrPheThrT : 271 ::!|||! !..!:!:||||||..!||||||||| !!:!!!!!|||||||||||||||! rgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleThrLeuGluThrPheThrL 33758 : GACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTACTA : 33817 272 : hr >>>> Target Intron 2 >>>> IleLeuSerSerThrPheSerTyrPheTh : 281 ! 440 bp |||:!!|||!!!:!!.!.||||||||||| ys++ ++IleMetSerThrSerMetSerTyrPheTh 33818 : AGgt.........................agATCATGAGTACATCAATGTCGTATTTCAC : 34287 282 : rLeuMetArgAsnSer : 286 ||||:!:!:!.!.||| rLeuLeuLysGlnSer 34288 : CCTACTAAAACAAAGT : 34304 vulgar: gi|805793982|ref|XP_012142616.1| 120 286 . KQ414828.1 32960 34304 + 321 M 59 177 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32961 34304 321 + . gene_id 2 ; sequence gi|805793982|ref|XP_012142616.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32961 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32961 33137 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 2 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34304 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34304 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32961 34304 321 + . alignment_id 2 ; Query gi|805793982|ref|XP_012142616.1| ; Align 32961 121 177 ; Align 33544 180 276 ; Align 34260 272 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793982|ref|XP_012142616.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 318 Query range: 120 -> 284 Target range: 22881 -> 24178 121 : SerAspProGluLysTyrThrGluGluCysTyrMetAlaLeuLysLysCysIleArgGln : 140 ||| !||| !|||:!!|||:!!||||||!!: !!!!|||!!.||||||!:!||| SerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGln 22882 : AGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAG : 22939 141 : HisGlnLeuIleIleValPheCysAsnMetMetGluSerValTyrSerThrThrIlePhe : 160 |||||| !:!!|||! !|||||| ! :!:|||..!|||!:!!!!..!! !:!!.!! HisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleValLeu 22940 : CATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTC : 22999 161 : IleHisValThrIleValSerValLeuMetCysLeuAspTrpTyrGluIleLeuLeu > : 180 !!!.||| !!!: !|||:!!|||!!:|||!!! ! !!|||:!!:!!|||||| GlyGlnValLeuMetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeu++ 23000 : GGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGgt. : 23061 181 : >>> Target Intron 1 >>>> AlaAsnProGlyAsnAlaMetArgLeuIlePheI : 191 492 bp !!!. !..! !! ! !|||:!! !||| ++IleLysLeuSerPheGluSerArgValAlaPheA 23062 : ........................agATAAAGTTATCATTTGAATCGCGCGTTGCTTTCG : 23584 192 : lePheHisMetLeuGlySerLeuGlyHisLeuCysIleLeuThrCysSerCysHisTyrM : 211 ! ! !:!!:!! !.!!:!!.!!!!.|||!! !!:!!!|||! !|||||| !!! !! laCysPheLeuMetMetGlyMetSerGlnLeuTrpMetPheThrTyrSerCysAspCysI 23585 : CGTGCTTCTTGATGATGGGCATGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCA : 23644 212 : etMetGluGluSerSerAsnIleValArgAlaAlaTyrGlyGlySerTrpSerSerLeuP : 231 !:! !|||||| !||||||!.!..!:!!!.!|||!.!||| !!|||! !!:!|||| leThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuP 23645 : TAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTAC : 23704 232 : roMetAsnGlnSerGlyArgSerLeuArgThrAlaMetMetPheIleMetIleArgAlaM : 251 |||||:!!:!!! !|||!:! !||||||! !! !:!!....!.:!!!!::!:||||||! roMetAspLysPheGlyLysLeuLeuArgLysGluLeuGlnMetLeuIleLeuArgAlaA 23705 : CAATGGACAAATTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGGGCGA : 23764 252 : etLysProCysCysIleThrAlaAlaGlyPhePheProValSerLeuGluThrPheThrT : 271 ::!|||! !..!:!:||||||..!||||||||| !!:!!||||||||||||||||||! rgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrL 23765 : GACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTA : 23824 272 : hr >>>> Target Intron 2 >>>> IleLeuSerSerThrPheSerTyrPheTh : 281 ! 313 bp |||:!!|||!!!:!!.!.||||||||||| ys++ ++IleMetSerThrSerMetSerTyrPheTh 23825 : AGgt.........................agATCATGAGTACATCAATGTCGTATTTCAC : 24167 282 : rLeuMetArg : 284 ||||:!:!:! rLeuLeuLys 24168 : ATTATTAAAA : 24178 vulgar: gi|805793982|ref|XP_012142616.1| 120 284 . KQ414828.1 22881 24178 + 318 M 59 177 5 0 2 I 0 488 3 0 2 M 92 276 5 0 2 I 0 309 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22882 24178 318 + . gene_id 3 ; sequence gi|805793982|ref|XP_012142616.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22882 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22882 23058 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23059 23060 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23059 23550 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 23549 23550 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 23551 23826 . + . KQ414828.1 exonerate:protein2genome:local exon 23551 23826 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23827 23828 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23827 24139 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 24138 24139 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 24140 24178 . + . KQ414828.1 exonerate:protein2genome:local exon 24140 24178 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22882 24178 318 + . alignment_id 3 ; Query gi|805793982|ref|XP_012142616.1| ; Align 22882 121 177 ; Align 23551 180 276 ; Align 24140 272 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793982|ref|XP_012142616.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 250 Query range: 174 -> 284 Target range: 19341 -> 19894 175 : TyrGluIleLeuLeuAlaAsnProGlyAsnAlaMetArgLeuIlePheIlePheHisMet : 194 ||| ! :!!|||! !|||||| !! !!.! !! |||||||||||||||||||||!!: TyrTyrValLeuGlnAlaAsnThrProThrArgThrArgLeuIlePheIlePheHisIle 19342 : TATTACGTTTTACAGGCAAATACACCTACCAGAACCCGACTGATTTTCATCTTTCACATA : 19399 195 : LeuGlySerLeuGlyHisLeuCysIleLeuThrCysSerCysHisTyrMetMetGluGlu : 214 !!.!!!!:!! !!!!.||| !!:!!!|||! !|||||| !!! !!!:!!:..!||| GlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGlu 19400 : GGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGCTGCGACTGCATCATAAGAGAA : 19459 215 : SerSerAsnIleValArgAlaAlaTyrGlyGlySerTrpSerSerLeuProMetAsnGln : 234 |||!!!!:!! !!.!..!|||!.!|||.!!||| !!|||!!! !|||||||||!:! ! SerThrSerThrAlaGluAlaValTyrSerGlyProTrpThrLeuLeuProMetSerAla 19460 : AGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGACACTTTTACCAATGAGCGCA : 19519 235 : SerGlyArgSerLeuArgThrAlaMetMetPheIleMetIleArgAlaMetLysProCys : 254 ..!|||!:!! !:!!|||! !! !:!!|||.!!:!!!!:!!:|||:!!! !|||||| AspGlyLysMetIleArgLysAspLeuMetLeuValIleMetArgSerSerValProCys 19520 : GACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCATGAGATCGAGCGTACCTTGT : 19579 255 : CysIleThrAlaAlaGlyPhePheProValSerLeuGluThrPheThrThr >>>> Ta : 272 |||:!:|||||| !||||||||| !|||||||||||||||!:!||| ! CysLeuThrAlaArgGlyPhePheValValSerLeuGluThrTyrThrGly++ 19580 : TGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAACGTACACAGGGgt....... : 19635 273 : rget Intron 1 >>>> IleLeuSerSerThrPheSerTyrPheThrLeuMetArg : 284 223 bp :!!||||||!!!.!! !|||||||||||||||:!!!:! ++ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuLys 19636 : ..................agGTTTTAAGCACCGCAGCCTCATACTTTACGTTGCTGAAG : 19894 vulgar: gi|805793982|ref|XP_012142616.1| 174 284 . KQ414828.1 19341 19894 + 250 M 97 291 5 0 2 I 0 219 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 19342 19894 250 + . gene_id 4 ; sequence gi|805793982|ref|XP_012142616.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 19342 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19342 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19894 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19894 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 19342 19894 250 + . alignment_id 4 ; Query gi|805793982|ref|XP_012142616.1| ; Align 19342 175 291 ; Align 19856 272 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793982|ref|XP_012142616.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 228 Query range: 179 -> 274 Target range: 12469 -> 12754 180 : AlaAsnProGlyAsnAlaMetArgLeuIlePheIlePheHisMetLeuGlySerLeuGly : 199 |||||| !!..! !|||! !||| !||||||!!:|||! !!!:! !|||:!!:!!! ! AlaAsnThrSerLeuAlaArgArgSerIlePheMetPheLeuIleCysGlyAlaMetVal 12470 : GCTAATACTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTT : 12527 200 : HisLeuCysIleLeuThrCysSerCysHisTyrMetMetGluGluSerSerAsnIleVal : 219 |||! !!!:!!!|||! !||||||:!! :!!!!:|||:!!|||..!||||||!.! LeuLeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAla 12528 : TTATTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCT : 12587 220 : ArgAlaAlaTyrGlyGlySerTrpSerSerLeuProMetAsnGlnSerGlyArgSerLeu : 239 !|||||||||..!!.! !|||!!!.!!:!!|||||||||:!!!!!|||!:!!.!||| PheAlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeu 12588 : TTTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTA : 12647 240 : ArgThrAlaMetMetPheIleMetIleArgAlaMetLysProCysCysIleThrAlaAla : 259 ||| !! !:!!!!:.!.:!!!!: |||:!!! ::! !||||||:!:|||||| ! ArgHisAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsn 12648 : CGGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAAT : 12707 260 : GlyPhePheProValSerLeuGluThrPheThrThrIleLeuSer : 274 |||||||||||||||||||||||||||!:!||||||:!: !||| GlyPhePheProValSerLeuGluThrTyrThrThrValSerSer 12708 : GGATTTTTCCCTGTGTCCTTAGAAACTTATACTACGGTGAGTTCA : 12754 vulgar: gi|805793982|ref|XP_012142616.1| 179 274 . KQ414828.1 12469 12754 + 228 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 12470 12754 228 + . gene_id 5 ; sequence gi|805793982|ref|XP_012142616.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 12470 12754 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12754 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 12470 12754 228 + . alignment_id 5 ; Query gi|805793982|ref|XP_012142616.1| ; Align 12470 180 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793982|ref|XP_012142616.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 190 -> 272 Target range: 38514 -> 38760 191 : IlePheHisMetLeuGlySerLeuGlyHisLeuCysIleLeuThrCysSerCysHisTyr : 210 !!:||| ! !:!! !.!!:!!.!!!!.|||!! !!:!!!|||! !|||||| !!! ! MetPheAlaThrMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCys 38515 : ATGTTCGCAACGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGC : 38572 211 : MetMetGluGluSerSerAsnIleValArgAlaAlaTyrGlyGlySerTrpSerSerLeu : 230 !!:! !|||||| !||||||!.!..!:!!!.!|||!.!||| !!|||! !!:!||| IleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeu 38573 : ATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTA : 38632 231 : ProMetAsnGlnSerGlyArgSerLeuArgThrAlaMetMetPheIleMetIleArgAla : 250 ||||||:::::: |||::: ||||||! !! !:!:... ! :!!!!::!:|||||| ProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAla 38633 : CCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCG : 38692 251 : MetLysProCysCysIleThrAlaAlaGlyPhePheProValSerLeuGluThrPheThr : 270 ! ::!|||! !! !:!:||||||..!||||||||| !!:!!|||||||||||||||||| ArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThr 38693 : AGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACT : 38752 271 : ThrIle : 272 ! !:!! LysVal 38753 : AAGGTA : 38760 vulgar: gi|805793982|ref|XP_012142616.1| 190 272 . KQ414828.1 38514 38760 + 171 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38515 38760 171 + . gene_id 6 ; sequence gi|805793982|ref|XP_012142616.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38515 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38515 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38515 38760 171 + . alignment_id 6 ; Query gi|805793982|ref|XP_012142616.1| ; Align 38515 191 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793982|ref|XP_012142616.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 186 -> 272 Target range: 28526 -> 28784 187 : ArgLeuIlePheIlePheHisMetLeuGlySerLeuGlyHisLeuCysIleLeuThrCys : 206 |||:!! !!!. ! ! ! !:!! !.!!:!!.!!!!.|||!! !!:!!!|||! ! ArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuTrpMetPheThrTyr 28527 : CGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTATGGATGTTCACGTAC : 28584 207 : SerCysHisTyrMetMetGluGluSerSerAsnIleValArgAlaAlaTyrGlyGlySer : 226 |||||| !!! !!!:! !|||||| !||||||!.!..!:!!!.!|||!.!||| !! SerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyPro 28585 : AGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCA : 28644 227 : TrpSerSerLeuProMetAsnGlnSerGlyArgSerLeuArgThrAlaMetMetPheIle : 246 |||! !!:!|||||||||:::::: |||::: ||||||! !! !:!:... ! :!! TrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeu 28645 : TGGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTC : 28704 247 : MetIleArgAlaMetLysProCysCysIleThrAlaAlaGlyPhePheProValSerLeu : 266 !!::!:||||||! ::!|||! !! !:!:||||||..!||||||||| !!:!!|||||| IleLeuArgAlaArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeu 28705 : ATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTC : 28764 267 : GluThrPheThrThrIle : 272 ||||||||||||! !:!! GluThrPheThrLysVal 28765 : GAAACCTTTACTAAGGTA : 28784 vulgar: gi|805793982|ref|XP_012142616.1| 186 272 . KQ414828.1 28526 28784 + 167 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28527 28784 167 + . gene_id 7 ; sequence gi|805793982|ref|XP_012142616.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28527 28784 . + . KQ414828.1 exonerate:protein2genome:local exon 28527 28784 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28527 28784 167 + . alignment_id 7 ; Query gi|805793982|ref|XP_012142616.1| ; Align 28527 187 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793982|ref|XP_012142616.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 77 -> 181 Target range: 10840 -> 11170 78 : ValTyrIleIleGlyMetGlyTyrValCysProAspIleLeuMetCysLeuLeuAsnVal : 97 :!!|||.!!! !|||!!: !!||| !!||| !|||! !:!!.!.|||:!!:!!!:!||| LeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerVal 10841 : CTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTG : 10898 98 : HisAlaValGlyGlnPheArgIleLeuGlnTyrArgMetLeuAsnPheTrpAsnIleVal : 117 ||| ! !|||||||||||||||||||||||||||:!! !!!..!.! :!!:!! ! HisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGln 10899 : CATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAA : 10958 118 : CysLysAspSerAspPro<-><->GluLysTyrThrGluGluCys<-><-><-><->Tyr : 131 ! !:!! |||::: |||... !|||!!:||| ||| TyrGlnIleSerGluLysAsnMetGluSerValLeuGluAspCysThrArgArgSerTyr 10959 : TATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGTAGATCTTAC : 11018 132 : MetAlaLeuLysLysCysIleArgGlnHisGlnLeuIleIleValPheCysAsnMetMet : 151 ! !!!!|||!..! !:!!|||||||||||| !:!:|||! !!:!! !.!.! !:!: GluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLysLeu 11019 : GAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAGCTT : 11078 152 : GluSerValTyrSerThrThrIlePheIleHisValThrIleValSerValLeuMetCys : 171 ||| !||||||!!!! !! !|||.!! !!.||| !:!: !!|||||||||!!:||| GluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIleCys 11079 : GAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATTTGC : 11138 172 : LeuAspTrpTyrGluIleLeuLeuAlaAsn : 181 ||| ! ! |||:!!|||||||||!.!!:! LeuPheGlyTyrGlnIleLeuLeuValSer 11139 : CTCTTTGGTTATCAGATATTATTGGTTAGT : 11170 vulgar: gi|805793982|ref|XP_012142616.1| 77 181 . KQ414828.1 10840 11170 + 147 M 46 138 G 0 6 M 7 21 G 0 12 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10841 11170 147 + . gene_id 8 ; sequence gi|805793982|ref|XP_012142616.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 10841 11170 . + . KQ414828.1 exonerate:protein2genome:local exon 10841 11170 . + . insertions 18 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10841 11170 147 + . alignment_id 8 ; Query gi|805793982|ref|XP_012142616.1| ; Align 10841 78 138 ; Align 10985 124 21 ; Align 11018 131 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793982|ref|XP_012142616.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 120 -> 181 Target range: 38024 -> 38207 121 : SerAspProGluLysTyrThrGluGluCysTyrMetAlaLeuLysLysCysIleArgGln : 140 ||| !||| !|||:!!|||:!!||||||!!: !!!!|||!!.||||||!:!||| SerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGln 38025 : AGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAG : 38082 141 : HisGlnLeuIleIleValPheCysAsnMetMetGluSerValTyrSerThrThrIlePhe : 160 |||||| !:!!|||! !|||||| ! :!:|||..!|||!:!!!!..!! ! !.!! HisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeu 38083 : CATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTC : 38142 161 : IleHisValThrIleValSerValLeuMetCysLeuAspTrpTyrGluIleLeuLeuAla : 180 !!!.||| !!!: !!|||:!!|||!!:|||!!!! ! !|||:!! !||||||!.! GlyGlnValLeuMetPheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeuVal 38143 : GGACAAGTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGGTG : 38202 181 : Asn : 181 !:! Ser 38203 : AGT : 38207 vulgar: gi|805793982|ref|XP_012142616.1| 120 181 . KQ414828.1 38024 38207 + 131 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38025 38207 131 + . gene_id 9 ; sequence gi|805793982|ref|XP_012142616.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38025 38207 . + . KQ414828.1 exonerate:protein2genome:local exon 38025 38207 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38025 38207 131 + . alignment_id 9 ; Query gi|805793982|ref|XP_012142616.1| ; Align 38025 121 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793982|ref|XP_012142616.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 75 -> 120 Target range: 18042 -> 18177 76 : ValCysValTyrIleIleGlyMetGlyTyrValCysProAspIleLeuMetCysLeuLeu : 95 :!!! !:!!||| !||||||:!!.!!||| !!||| ||| ...:::|||::!:!! LeuSerLeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIleMet 18043 : CTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgcttcgacaattttttatgcatCATG : 18100 96 : AsnValHisAlaValGlyGlnPheArgIleLeuGlnTyrArgMetLeuAsnPheTrpAsn : 115 |||:!!||||||!.! !|||||||||:!!||||||||||||||| !|||.!. :!! AsnLeuHisAlaAlaThrGlnPheArgValLeuGlnTyrArgMetAlaAsnMetThrAsp 18101 : AACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAATACCGAATGGCGAATATGACCGAT : 18160 116 : IleValCysLysAsp : 120 :!! ! |||::: LeuLysAspLysGlu 18161 : TTAAAGGacaaagag : 18177 vulgar: gi|805793982|ref|XP_012142616.1| 75 120 . KQ414828.1 18042 18177 + 115 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 18043 18177 115 + . gene_id 10 ; sequence gi|805793982|ref|XP_012142616.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 18043 18177 . + . KQ414828.1 exonerate:protein2genome:local exon 18043 18177 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 18043 18177 115 + . alignment_id 10 ; Query gi|805793982|ref|XP_012142616.1| ; Align 18043 76 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793979|ref|XP_012142615.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 367 Query range: 335 -> 491 Target range: 11020 -> 13152 336 : GluAspLeuArgLysCysValAsnGluTyrGlnSerLeuIleGluPheCysGluAsnMet : 355 ||| ! !!!!:!!..! !|||...:!!:!!|||!!!||||||!!:!:!! !|||!!.:!: GluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLysLeu 11021 : GAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAGCTT : 11078 356 : GluHisValPheSerArgThrLeuLeuIleHisValAlaIlePheSerValLeuMetGly : 375 |||||||||!:!!!!!:!! !:!!||| !!.||| !:!:||||||||||||!!: !! GluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIleCys 11079 : GAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATTTGC : 11138 376 : PheAspGlyTyrGluIleLeuLeu >>>> Target Intron 1 >>>> SerAsnA : 386 .!! !||||||:!!||||||||| 1305 bp :!!|||. LeuPheGlyTyrGlnIleLeuLeu++ ++AlaAsnT 11139 : CTCTTTGGTTATCAGATATTATTGgt.........................agGCTAATA : 12476 387 : laProLeuAlaArgArgCysThrPheIlePheHisValAlaGlySerPheIleHisLeuG : 406 !! !!|||||||||||| !!! !|||!!:|||! !:!!..!|||:!!.!.:!! ||| hrSerLeuAlaArgArgSerIlePheMetPheLeuIleCysGlyAlaMetValLeuLeuP 12477 : CTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTTTTATTGT : 12536 407 : lyIlePheThrPheCysCysSerGlyLeuThrGluGluSerSerLysIleSerThrIleI : 426 !!!:||||||!:! !!|||!:! !:!!! !|||:!!|||..!!!.|||:!! ! heMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAlaPheAlaA 12537 : TTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCTTTTGCGG : 12596 427 : leTyrPheGlySerTrpSerThrLeuProMetAspGlnIleGlyLysSerIleArgSerL : 446 |||! !.! !|||!!! !:!!||||||:!!:!!! !||||||!.!:!!||| ! laTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeuArgHisA 12597 : CGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTACGGCATG : 12656 447 : ysIleIleIleValMetMetArgThrMetArgProCysCysLeuThrAlaGlyGlyPheP : 466 ! :!:|||!!:|||!!: !|||:!!! ||| !|||||||||||||||..!||||||| spLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsnGlyPheP 12657 : ATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATGGATTTT : 12716 467 : heProValSerLeuLysThrPheThrThr >>>> Target Intron 2 >>>> Le : 476 ||||||||||||||:!!|||!:!|||||| 359 bp :: heProValSerLeuGluThrTyrThrThr++ ++Il 12717 : TCCCTGTGTCCTTAGAAACTTATACTACGgt.........................agat : 13105 477 : uLeuSerSerThrPheSerTyrPheThrLeuMetArgAsnSerIle : 491 :||||||!!!.!! |||||||||||||||:!!||||||!:!:!! eLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnVal 13106 : tttgAGTACCGCGGCGTCGTACTTCACATTATTGAGAAATAACGTA : 13152 vulgar: gi|805793979|ref|XP_012142615.1| 335 491 . KQ414828.1 11020 13152 + 367 M 48 144 5 0 2 I 0 1301 3 0 2 M 92 276 5 0 2 I 0 355 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 11021 13152 367 + . gene_id 1 ; sequence gi|805793979|ref|XP_012142615.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 11021 11164 . + . KQ414828.1 exonerate:protein2genome:local exon 11021 11164 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 11165 11166 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 11165 12469 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12468 12469 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 12470 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12745 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13104 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13103 13104 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 13105 13152 . + . KQ414828.1 exonerate:protein2genome:local exon 13105 13152 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 11021 13152 367 + . alignment_id 1 ; Query gi|805793979|ref|XP_012142615.1| ; Align 11021 336 144 ; Align 12470 384 276 ; Align 13105 476 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793979|ref|XP_012142615.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 296 Query range: 329 -> 491 Target range: 22896 -> 24187 330 : TyrAlaIleGlnCysSerGluAspLeuArgLysCysValAsnGluTyrGlnSerLeuIle : 349 |||:!! :!!|||! ! ! !!!!:!!!.|||:!!.!.:!!:!!|||:!!|||||| TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 22897 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATT : 22954 350 : GluPheCysGluAsnMetGluHisValPheSerArgThrLeuLeuIleHisValAlaIle : 369 |||||||||! !!..:!:|||.!.||||||!!! !! !:!!||| !!!.||| !!!: GluPheCysAlaThrLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMet 22955 : GAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCTAATG : 23014 370 : PheSerValLeuMetGlyPheAspGlyTyrGluIleLeuLeu >>>> Target Intr : 384 ! !|||:!!|||!!: !!||| !||||||:!!:!!|||||| 492 bp SerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeu++ 23015 : TCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGgt................ : 23061 385 : on 1 >>>> SerAsnAlaProLeuAlaArgArgCysThrPheIlePheHisValAlaG : 400 ! !!!. ! !!!!!! ! !||| !.!!||| ! ! !:!! ! ++IleLysLeuSerPheGluSerArgValAlaPheAlaCysPheLeuMetM 23062 : .........agATAAAGTTATCATTTGAATCGCGCGTTGCTTTCGCGTGCTTCTTGATGA : 23599 401 : lySerPheIleHisLeuGlyIlePheThrPheCysCysSerGlyLeuThrGluGluSerS : 420 !.!!.!.! !!!.||| !!!!:||||||!:! !!|||..! !!:!!||| !|||||| etGlyMetSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerL 23600 : TGGGCATGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCATAACAACAGAAAGCC : 23659 421 : erLysIleSerThrIleIleTyrPheGlySerTrpSerThrLeuProMetAspGlnIleG : 440 !!!.|||:!! ! !:!:||| !||| !!|||! !!.!||||||||||||:!!.!!| euAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheG 23660 : TGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATGGACAAATTTG : 23719 441 : lyLysSerIleArgSerLysIleIleIleValMetMetArgThrMetArgProCysCysL : 460 ||||| !:!!|||!.!:!!:!: !!!::!!!!::!!|||.!!! ||||||! !..!| lyLysLeuLeuArgLysGluLeuGlnMetLeuIleLeuArgAlaArgArgProSerAlaL 23720 : GAAAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGGGCGAGACGACCTTCCGCTT : 23779 461 : euThrAlaGlyGlyPhePheProValSerLeuLysThrPheThrThr >>>> Target : 476 |||||||| !!||||||||| !!:!!||||||:!!|||||||||! ! 3 euThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 23780 : TGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt........... : 23829 477 : Intron 2 >>>> LeuLeuSerSerThrPheSerTyrPheThrLeuMetArgAsnSe : 490 13 bp :!!:!!|||!!!:!!.!.|||||||||||||||:!:!:!.!.!! ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnCy 23830 : ..............agATCATGAGTACATCAATGTCGTATTTCACATTATTAAAACAATG : 24182 491 : rIle : 491 !||| sIle 24183 : TATC : 24187 vulgar: gi|805793979|ref|XP_012142615.1| 329 491 . KQ414828.1 22896 24187 + 296 M 54 162 5 0 2 I 0 488 3 0 2 M 92 276 5 0 2 I 0 309 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22897 24187 296 + . gene_id 2 ; sequence gi|805793979|ref|XP_012142615.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22897 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22897 23058 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23059 23060 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23059 23550 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 23549 23550 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 23551 23826 . + . KQ414828.1 exonerate:protein2genome:local exon 23551 23826 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23827 23828 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23827 24139 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 24138 24139 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 24140 24187 . + . KQ414828.1 exonerate:protein2genome:local exon 24140 24187 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22897 24187 296 + . alignment_id 2 ; Query gi|805793979|ref|XP_012142615.1| ; Align 22897 330 162 ; Align 23551 384 276 ; Align 24140 476 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793979|ref|XP_012142615.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 262 Query range: 383 -> 496 Target range: 4171 -> 6480 384 : SerAsnAlaProLeuAlaArgArgCysThrPheIlePheHisValAlaGlySerPheIleHi : 404 ..!:!!.!!|||:!! !!:!||| !||||||:!:||||||:!!.!!|||!!!.!. !!! GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGl 4172 : GAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCA : 4232 405 : sLeuGlyIlePheThrPheCysCysSerGlyLeuThrGluGluSerSerLysIleSerThrI : 425 .||| !!!:||||||!:! !!|||..! !!|||! !..!||||||! !!!.:!::!!!.! nLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnA 4233 : ACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATG : 4295 426 : leIleTyrPheGlySerTrpSerThrLeuProMetAspGlnIleGlyLysSerIleArgSer : 445 !|||||| ! !!||||||! ! !||||||||||||::! !|||::!! !:!:|||!.! laIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLys 4296 : CTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAA : 4355 446 : LysIleIleIleValMetMetArgThrMetArgProCysCysLeuThrAlaGlyGlyPhePh : 466 ! :!:! !.!!|||!!: |||:!!! !|||||||||||||||||| !!|||||||| AspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePh 4356 : GATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTT : 4418 467 : eProValSerLeuLysThrPheThrThr >>>> Target Intron 1 >>>> LeuLe : 477 |||||||||||||:!!|||!:!|||:!! 1970 bp :!!:! eProValSerLeuGluThrTyrThrSer++ ++ValIl 4419 : CCCTGTGTCACTGGAAACGTACACTTCGgt.........................agGTTAT : 6421 478 : uSerSerThrPheSerTyrPheThrLeuMetArgAsnSerIleSerGlySerGluSer : 496 !|||!!!.!! ! |||||||||||||||:!:|||.!. !!|||..!! !|||.!.||| eSerThrAlaValSerTyrPheThrLeuLeuArgGlnArgIleGluAspSerAsnSer 6422 : AAGTACAGCAGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAGGACAGCAATAGT : 6480 vulgar: gi|805793979|ref|XP_012142615.1| 383 496 . KQ414828.1 4171 6480 + 262 M 92 276 5 0 2 I 0 1966 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 4172 6480 262 + . gene_id 3 ; sequence gi|805793979|ref|XP_012142615.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6480 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6480 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 4172 6480 262 + . alignment_id 3 ; Query gi|805793979|ref|XP_012142615.1| ; Align 4172 384 276 ; Align 6418 476 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793979|ref|XP_012142615.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 232 Query range: 378 -> 481 Target range: 19341 -> 19650 379 : TyrGluIleLeuLeuSerAsnAlaProLeuAlaArgArgCysThrPheIlePheHisVal : 398 ||| ! :!!|||! !:!!|||.!!||| ! !! !||| ! !||||||||||||:!! TyrTyrValLeuGlnAlaAsnThrProThrArgThrArgLeuIlePheIlePheHisIle 19342 : TATTACGTTTTACAGGCAAATACACCTACCAGAACCCGACTGATTTTCATCTTTCACATA : 19399 399 : AlaGlySerPheIleHisLeuGlyIlePheThrPheCysCysSerGlyLeuThrGluGlu : 418 !.!!.!!!!.!. !!!.||| !!!:||||||!:! !!|||..! !!:!!! !..!||| GlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGlu 19400 : GGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGCTGCGACTGCATCATAAGAGAA : 19459 419 : SerSerLysIleSerThrIleIleTyrPheGlySerTrpSerThrLeuProMetAspGln : 438 |||!!!!..! !:!! ! :!:||| !||| !!|||!!! !|||||||||..! ! SerThrSerThrAlaGluAlaValTyrSerGlyProTrpThrLeuLeuProMetSerAla 19460 : AGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGACACTTTTACCAATGAGCGCA : 19519 439 : IleGlyLysSerIleArgSerLysIleIleIleValMetMetArgThrMetArgProCys : 458 !||||||! !||||||!.! ! :!:!!::!!|||!!:||||||:!!! !|||||| AspGlyLysMetIleArgLysAspLeuMetLeuValIleMetArgSerSerValProCys 19520 : GACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCATGAGATCGAGCGTACCTTGT : 19579 459 : CysLeuThrAlaGlyGlyPhePheProValSerLeuLysThrPheThrThrLeuLeuSer : 478 |||||||||||| !!||||||||| !|||||||||:!!|||!:!||| !:!!:!! ! CysLeuThrAlaArgGlyPhePheValValSerLeuGluThrTyrThrGlyValIleVal 19580 : TGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAACGTACACAGGGGTAATCGTC : 19639 479 : SerThrPhe : 481 !!! !||| ThrLeuPhe 19640 : ACCCTTTTC : 19650 vulgar: gi|805793979|ref|XP_012142615.1| 378 481 . KQ414828.1 19341 19650 + 232 M 103 309 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 19342 19650 232 + . gene_id 4 ; sequence gi|805793979|ref|XP_012142615.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 19342 19650 . + . KQ414828.1 exonerate:protein2genome:local exon 19342 19650 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 19342 19650 232 + . alignment_id 4 ; Query gi|805793979|ref|XP_012142615.1| ; Align 19342 379 309 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793979|ref|XP_012142615.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 208 Query range: 403 -> 491 Target range: 38541 -> 39211 404 : HisLeuGlyIlePheThrPheCysCysSerGlyLeuThrGluGluSerSerLysIleSer : 423 !!.||| !!!!:||||||!:! !!|||..! !!:!!||| !|||||| !!!.|||:!! GlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAla 38542 : CAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCT : 38599 424 : ThrIleIleTyrPheGlySerTrpSerThrLeuProMetAspGlnIleGlyLysSerIle : 443 ! !:!!||| !||| !!|||! !!.!||||||||||||:::...|||||| :!! GluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeu 38600 : GAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaactgCTA : 38659 444 : ArgSerLysIleIleIleValMetMetArgThrMetArgProCysCysLeuThrAlaGly : 463 |||!.! ! :!! !:!::!!!!::!!|||.!!! ||||||! !! !||||||||| !! ArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThrAlaCys 38660 : AGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGT : 38719 464 : GlyPhePheProValSerLeuLysThrPheThrThr >>>> Target Intron 1 > : 476 ||||||||| !!:!!||||||:!!|||||||||! ! 406 bp GlyPhePheSerIleSerLeuGluThrPheThrLys++ 38720 : GGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt...................... : 38760 477 : >>> LeuLeuSerSerThrPheSerTyrPheThrLeuMetArgAsnSerIle : 491 :!!:!!|||!!!:!!.!.|||||||||||||||:!:!:!.!.|||||| ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnSerIle 38761 : ...agATCATGAGTACATCAATGTCGTATTTCACATTATTAAAACAAAGTATC : 39211 vulgar: gi|805793979|ref|XP_012142615.1| 403 491 . KQ414828.1 38541 39211 + 208 M 72 216 5 0 2 I 0 402 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38542 39211 208 + . gene_id 5 ; sequence gi|805793979|ref|XP_012142615.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 38542 38757 . + . KQ414828.1 exonerate:protein2genome:local exon 38542 38757 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 38758 38759 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 38758 39163 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 39162 39163 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 39164 39211 . + . KQ414828.1 exonerate:protein2genome:local exon 39164 39211 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38542 39211 208 + . alignment_id 5 ; Query gi|805793979|ref|XP_012142615.1| ; Align 38542 404 216 ; Align 39164 476 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793979|ref|XP_012142615.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 241 -> 317 Target range: 17818 -> 18156 242 : IleValSerAsnIleGlyLysAsnLysSerGluArgIleLeuProLeuAspValTrpPhe : 261 |||:!::::|||||||||||||||:::||||||||||||||||||!!!:!!:!!||| !! IleLeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpVal 17819 : ATTTTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTC : 17876 262 : AsnPheProSerThrGluThrProTyrTyrGluPheMetPheThrPheGln >>>> Ta : 279 |||!!.|||! !:!! !|||||||||||||||... |||:::...||| AsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln++ 17877 : AACTTGCCATTATCAATGACGCCATATTACgaaataactttttcattaCAGgt....... : 17932 280 : rget Intron 1 >>>> IleIleSerValPheLeuValGlyThrAlaTyrValSerP : 292 110 bp ::!:!:|||:!!!:!! !:!!|||..!::!||| !!! ++ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysP 17933 : ..................aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgct : 18079 293 : roAspThrLeuLeuCysIleLeuAsnLeuHisValIleTyrGlnPheArgMetLeuHisT : 312 |||......|||||||||:!!|||||||||!.! ! !|||||||||:!:|||!!.| heAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnT 18080 : tcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAAT : 18139 313 : yrArgMetLeuArgLeu : 317 |||||||| !!.!:!! yrArgMetAlaAsnMet 18140 : ACCGAATGGCGAATATG : 18156 vulgar: gi|805793979|ref|XP_012142615.1| 241 317 . KQ414828.1 17818 18156 + 204 M 37 111 5 0 2 I 0 106 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17819 18156 204 + . gene_id 6 ; sequence gi|805793979|ref|XP_012142615.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17819 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17819 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18156 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18156 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17819 18156 204 + . alignment_id 6 ; Query gi|805793979|ref|XP_012142615.1| ; Align 17819 242 111 ; Align 18040 279 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793979|ref|XP_012142615.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 403 -> 474 Target range: 28565 -> 28778 404 : HisLeuGlyIlePheThrPheCysCysSerGlyLeuThrGluGluSerSerLysIleSer : 423 !!.||| !!!!:||||||!:! !!|||..! !!:!!||| !|||||| !!!.|||:!! GlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAla 28566 : CAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCT : 28623 424 : ThrIleIleTyrPheGlySerTrpSerThrLeuProMetAspGlnIleGlyLysSerIle : 443 ! !:!!||| !||| !!|||! !!.!||||||||||||:::...|||||| :!! GluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeu 28624 : GAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaactgCTA : 28683 444 : ArgSerLysIleIleIleValMetMetArgThrMetArgProCysCysLeuThrAlaGly : 463 |||!.! ! :!! !:!::!!!!::!!|||.!!! ||||||! !! !||||||||| !! ArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThrAlaCys 28684 : AGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGT : 28743 464 : GlyPhePheProValSerLeuLysThrPheThr : 474 ||||||||| !!:!!||||||:!!||||||||| GlyPhePheSerIleSerLeuGluThrPheThr 28744 : GGATTCTTTTCTATATCTCTCGAAACCTTTACT : 28778 vulgar: gi|805793979|ref|XP_012142615.1| 403 474 . KQ414828.1 28565 28778 + 172 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28566 28778 172 + . gene_id 7 ; sequence gi|805793979|ref|XP_012142615.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28566 28778 . + . KQ414828.1 exonerate:protein2genome:local exon 28566 28778 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28566 28778 172 + . alignment_id 7 ; Query gi|805793979|ref|XP_012142615.1| ; Align 28566 404 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793979|ref|XP_012142615.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 318 -> 383 Target range: 32942 -> 33137 319 : LysArgAsnAsnGlyAsnThrAspAlaThrLysTyrAlaIleGlnCysSerGluAspLeu : 338 |||!!!|||:!!..!!..!:! ||| ! !|||:!! :!!|||! ! ! !!! LysSerAsnAspAsnThrSerThrAlaGluLeuTyrSerGluLysCysTyrIleLysPhe 32943 : AAGAGCAATGATAATACAAGCACGGCTGAATTATACTCAGAGAAATGTTACATCAAGTTT : 33000 339 : ArgLysCysValAsnGluTyrGlnSerLeuIleGluPheCysGluAsnMetGluHisVal : 358 !:!!!.|||:!!.!.:!!:!!|||:!!|||||||||||||||||| :::|||.!.||| LysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysGluIleLeuGluGluVal 33001 : AAGAATTGCATTCAACAACATCAGGCACTaattgaattttgtgaaatactCGAAGAGGTA : 33060 359 : PheSerArgThrLeuLeuIleHisValAlaIlePheSerValLeuMetGlyPheAspGly : 378 |||!!! !! !:!!||| !!!.||| !!!:||||||:!!:!!!!: !!|||! !||| PheThrValIleValLeuGlyGlnValLeuMetPheSerIleIleIleCysPheAlaGly 33061 : TTCACGGTAATCGTACTCGGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGG : 33120 379 : TyrGluIleLeuLeu : 383 ||||||:!!|||||| TyrGluValLeuLeu 33121 : TATGAAGTACTCCTG : 33137 vulgar: gi|805793979|ref|XP_012142615.1| 318 383 . KQ414828.1 32942 33137 + 140 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32943 33137 140 + . gene_id 8 ; sequence gi|805793979|ref|XP_012142615.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 32943 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32943 33137 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32943 33137 140 + . alignment_id 8 ; Query gi|805793979|ref|XP_012142615.1| ; Align 32943 319 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793979|ref|XP_012142615.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 243 -> 283 Target range: 2879 -> 2999 244 : SerAsnIleGlyLysAsnLysSerGluArgIleLeuProLeuAspValTrpPheAsnPhePr : 264 :!!!::||||||||||||:::|||!!:|||:!!||| !:!!:!! !!|||.!!:!!.!.|| AlaSerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuPr 2880 : GCAAgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCC : 2940 265 : oSerThrGluThrProTyrTyrGluPheMetPheThrPheGlnIleIleSerValPhe : 283 |! !||| |||||||||||||||...:::||||||.!.|||::: :::||| oIleThrIleThrProTyrTyrGluIleLeuPheThrIleGlnValThr***IlePhe 2941 : GATAACCATCACACCATactatgaaatattatttacgaTACAGgtaacgtgaattttt : 2999 vulgar: gi|805793979|ref|XP_012142615.1| 243 283 . KQ414828.1 2879 2999 + 114 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2880 2999 114 + . gene_id 9 ; sequence gi|805793979|ref|XP_012142615.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 2880 2999 . + . KQ414828.1 exonerate:protein2genome:local exon 2880 2999 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2880 2999 114 + . alignment_id 9 ; Query gi|805793979|ref|XP_012142615.1| ; Align 2880 244 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793979|ref|XP_012142615.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 329 -> 383 Target range: 38039 -> 38201 330 : TyrAlaIleGlnCysSerGluAspLeuArgLysCysValAsnGluTyrGlnSerLeuIle : 349 |||:!! :!!|||! ! ! !!!!:!!!.|||:!!.!.:!!:!!|||:!!|||||| TyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIle 38040 : TACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATT : 38097 350 : GluPheCysGluAsnMetGluHisValPheSerArgThrLeuLeuIleHisValAlaIle : 369 |||||||||! !!..:!:|||.!.||||||!!! !! ! !||| !!!.||| !!!: GluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnValLeuMet 38098 : GAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCTAATG : 38157 370 : PheSerValLeuMetGlyPheAspGlyTyrGluIleLeuLeu : 383 ||||||:!!|||!!: !!|||! !! !|||:!! !|||||| PheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeu 38158 : TTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTG : 38201 vulgar: gi|805793979|ref|XP_012142615.1| 329 383 . KQ414828.1 38039 38201 + 108 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38040 38201 108 + . gene_id 10 ; sequence gi|805793979|ref|XP_012142615.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38040 38201 . + . KQ414828.1 exonerate:protein2genome:local exon 38040 38201 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38040 38201 108 + . alignment_id 10 ; Query gi|805793979|ref|XP_012142615.1| ; Align 38040 330 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795911|ref|XP_012143140.1| PREDICTED: odorant receptor 49a-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 291 Query range: 217 -> 326 Target range: 1233598 -> 1233126 218 : AlaValGlnAlaValLeuHisMetAspArgProAsnGluPheIleAlaIleLeuMe : 236 :!! !!|||.!!|||||| :!!||||||||| ||| !:!! ! ! !:! SerPheGlnThrValLeuThrLeuAspArgProAlaGluAlaLeuArgCysAlaVa 1233598 : TCCTTCCAGACAGTCCTCACACTGGACAGGCCGGCAGAAGCTCTTAGATGTGCTGT : 1233544 237 : tPheMetCysGlyGlnGlnPheHisGlnPheAlaLeuCysLeuProGlyGlnValL : 255 !|||:!: !.!:!!||||||||| !||| !:!! !!||||||||||||..!| lPheLeuValAlaGluGlnPheHisLeuPheIleIleSerLeuProGlyGlnThrL 1233543 : GTTCCTTGTAGCGGAGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACAC : 1233487 256 : euIleAspArgSerLeuAspLeuIleAsnAsp{Il} >>>> Target Intron : 266 ||:!:|||!.!!!! ! ! ||| !!.|||{||} 70 bp euValAspHisCysThrLysLeuSerLysAsp{Il}++ 1233486 : TCGTGGATCATTGTACGAAACTATCGAAGGAT{AT}gt.................. : 1233450 267 : 1 >>>> {e}TyrSerSerLysTrpTyrGlnThrProValLysTyrGlnArgTh : 281 {|}|||||||||! !||||||:!!..!|||!.!|||!:!||||||.. ++{e}TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgVa 1233449 : .......ag{A}TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGT : 1233339 282 : rIleLeuThrMetGlnIleArgCysSerLysAlaCysLysLeuThrAlaGlyGlyP : 300 !|||! !|||||||||||||||..! !||| !!||| |||||||||||||||! lIleTyrThrMetGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyL 1233338 : AATTTACACGATGCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGAT : 1233282 301 : heTyrGluMetAsnMetGluAsnPheGlyAla >>>> Target Intron 2 > : 311 !.||||||||||||||||||||||||!.! ! 75 bp euTyrGluMetAsnMetGluAsnPheAlaAsn++ 1233281 : TGTATGAAATGAACATGGAGAACTTTGCAAACgt...................... : 1233247 312 : >>> IleIleLysThrSerValSerTyrPheThrValLeuLeuSerLeuArg : 326 !.!!||||||!!!:!!||||||||||||:!!|||:!!||||||||| ++ThrPheLysThrCysMetSerTyrPheThrMetLeuMetSerLeuArg 1233246 : ...agaCATTCAAAACGTGCATGTCATACTTCACAATGCTGATGTCACTTAGA : 1233127 vulgar: gi|805795911|ref|XP_012143140.1| 217 326 . KQ414851.1 1233598 1233126 - 291 M 48 144 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 44 132 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233127 1233598 291 - . gene_id 1 ; sequence gi|805795911|ref|XP_012143140.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233453 1233598 . - . KQ414851.1 exonerate:protein2genome:local exon 1233453 1233598 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233451 1233452 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233383 1233452 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233383 1233384 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233250 1233382 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233382 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 1 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233127 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233127 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233127 1233598 291 - . alignment_id 1 ; Query gi|805795911|ref|XP_012143140.1| ; Align 1233599 218 144 ; Align 1233382 267 132 ; Align 1233175 311 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795911|ref|XP_012143140.1| PREDICTED: odorant receptor 49a-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 285 Query range: 28 -> 191 Target range: 1229734 -> 1229016 29 : PheAspHisMetPheAspArgMetSerGlnLeuTrpGluIleAlaGluMetAsnGl : 47 ||| |||:::::: !:!!!!! ! !|||||| !..!||||||! PheArgLysMetTyrAsnLeuValThrIleGluTrpGluGlnLeuArgMetAsnAs 1229734 : tttagaaaaatgtataatctCGTGACAATAGAGTGGGAGCAGTTGAGGATGAACGA : 1229680 48 : yGluValGluValLeuLysGluValThrAspGluGlySerGlnMetGlySerMetP : 66 !||||||.!.||||||:!!||||||||| :!!||||||:!!:!!!.!..!:!:! pGluValHisValLeuGlnGluValThrLeuLysGlySerLysLeuAlaGlnLeuT 1229679 : CGAGGTGCATGTGCTTCAAGAGGTTACTTTGAAAGGTAGTAAATTGGCCCAATTAT : 1229623 67 : heArg{S} >>>> Target Intron 1 >>>> {er}SerIleTrpIlePhe : 73 :!|||{!} 126 bp {:!}:!!:!! .!! yrArg{A}++ ++{sn}AlaLeuLeuPheAla 1229622 : ACAGA{A}gt.........................ag{AT}GCTTTACTCTTCGCA : 1229476 74 : ThrIlePhePheLeuSerMetProLeuCysProIlePheLeuAspPheIleLeuPr : 92 ! ! ! !!|||||| !:!:||||||! ! ! ! !||||||.!!:!!||||| MetCysValPheLeuLeuValProLeuPheGlyProAlaLeuAspIleValLeuPr 1229475 : ATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCGTCCTTCC : 1229419 93 : oLeuAsnGluThrArgAlaArgGluProLeuPheLysLeuAsnTyrMetVal<->A : 110 |! !|||||||||||| !!|||:!!! !||||||!:!:!!||||||!!::!! | oSerAsnGluThrArgProArgGlnGlnLeuPheArgValAsnTyrIleIlePheA 1229418 : ATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAATTTTCG : 1229362 111 : spMetArgAspHisPhePheIleGluTyrPheHisSerAlaPheSerSerIleVal : 128 ||... !|||:!!|||||| !! !|||.!!!!.! ! !!::!!!!!!|||||| spGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPheTrpCysThrIleVal 1229361 : ACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACAATCGTT : 1229308 129 : ValValLeuIleThrAlaThrPheAspSerLeuTyrMetValIleIleHisTyrGl : 147 :!!|||:!! !! ! !||| ! |||||||||||||||:!!||||||:!!:!!!. LeuValMetAlaIleIleThrValAspSerLeuTyrMetIleIleIleTyrHisAl 1229307 : CTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGATCATAATTTACCATGC : 1229251 148 : yCysGlyLeuPheAlaLeuCys{Gl} >>>> Target Intron 2 >>>> { : 155 ! !!|||:!!||||||:!!|||{||} 88 bp { aSerGlyMetPheAlaIleCys{Gl}++ ++{ 1229250 : CAGCGGAATGTTCGCTATATGC{GG}gt.........................ag{ : 1229137 156 : y}TyrGlnValLysLysAlaAlaGlu<-><-><-><->IleAlaGlyThrAsnAla : 169 |}||||||||||||||||||.!!||| |||! !..!!:!||| ! y}TyrGlnValLysLysAlaThrGluPheValAspSerIleAspAsnSerAsnIle 1229136 : C}TACCAAGTGAAAAAAGCAACAGAATTTGTGGACTCAATCGACAACAGTAACATT : 1229085 170 : ThrIleCysThrLysAsnAspLeuPheArgArgCysValIleThrHisHisGluAl : 188 :!! ! ! !! !:!!!!:! !|||!:!|||||||||! !! !||| !!:!!|| SerGlnAsnHisThrHisGluGlnPheLysArgCysValThrMetHisAspLysAl 1229084 : TCTCAAAATCATACACACGAACAGTTCAAACGATGCGTGACTATGCACGATAAAGC : 1229028 189 : aIleArgPhe : 191 ||||!:!||| aIleLysPhe 1229027 : TATCAAGTTT : 1229017 vulgar: gi|805795911|ref|XP_012143140.1| 28 191 . KQ414851.1 1229734 1229016 - 285 M 39 117 S 0 1 5 0 2 I 0 122 3 0 2 S 1 2 M 41 123 G 0 3 M 45 135 S 0 2 5 0 2 I 0 84 3 0 2 S 1 1 M 8 24 G 0 12 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229017 1229734 285 - . gene_id 2 ; sequence gi|805795911|ref|XP_012143140.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1229617 1229734 . - . KQ414851.1 exonerate:protein2genome:local exon 1229617 1229734 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1229615 1229616 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1229491 1229616 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1229491 1229492 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1229226 1229490 . - . KQ414851.1 exonerate:protein2genome:local exon 1229226 1229490 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1229224 1229225 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1229138 1229225 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1229138 1229139 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1229017 1229137 . - . KQ414851.1 exonerate:protein2genome:local exon 1229017 1229137 . - . insertions 12 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229017 1229734 285 - . alignment_id 2 ; Query gi|805795911|ref|XP_012143140.1| ; Align 1229735 29 117 ; Align 1229489 69 123 ; Align 1229363 110 135 ; Align 1229137 156 24 ; Align 1229101 164 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795911|ref|XP_012143140.1| PREDICTED: odorant receptor 49a-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 250 Query range: 219 -> 317 Target range: 1222717 -> 1222352 220 : GlnAlaValLeuHisMetAspArgProAsnGluPheIleAlaIleLeuMetPheMe : 238 |||..!:!!:!!:!!!!:|||||||||:!!|||.!!||| !:!! !||||||:! GlnCysIleMetAsnIleAspArgProAspGluLeuIleArgLeuAlaMetPheVa 1222717 : CAGTGCATTATGAACATCGACCGACCTGACGAACTCATCAGGCTTGCGATGTTTGT : 1222663 239 : tCysGlyGlnGlnPheHisGlnPheAlaLeuCysLeuProGlyGlnValLeuIleA : 257 : !..|||:::|||||| ... !||| !!||||||||||||:!!|||:!!| lValAlaGlnLysPheHisLeuLeuIleLeuSerLeuProGlyGlnMetLeuLeuA 1222662 : CGTAGctcagaaatttcatttgctcATCCTTAGTTTACCTGGGCAAATGTTGTTAG : 1222606 258 : spArgSerLeuAspLeuIleAsnAsp{Il} >>>> Target Intron 1 >>> : 266 ||!.!||||||! ||| !:!! {||} 71 bp spHisSerLeuGlyLeuAlaAspIle{Il}++ 1222605 : ATCATAGTTTAGGATTGGCCGATATA{AT}gt........................ : 1222575 267 : > {e}TyrSerSerLysTrpTyrGlnThrProValLysTyrGlnArgThrIleLe : 283 {|}|||:!!||||||||||||:!! !||||||||| |||!:! !|||! ++{e}TyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTy 1222574 : .ag{T}TACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTA : 1222457 284 : uThrMetGlnIleArgCysSerLysAlaCysLysLeuThrAlaGlyGlyPheTyrG : 302 !|||||||||!!:|||! !! !::! !!|||! !||||||||||||||| ! :!!| rThrMetGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisG 1222456 : CACGATGCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATG : 1222400 303 : luMetAsnMetGluAsnPheGlyAlaIleIleLysThrSerValSer : 317 ||||||||!!:|||!:!|||||| !:!! !!!.!.!! !:!!!:! luMetAsnIleGluSerPheGlyIleValCysAsnAsnMetIleAsn 1222399 : AGATGAACATCGAGAGTTTCGGAATAGTATGTAATAATATGATAAAT : 1222353 vulgar: gi|805795911|ref|XP_012143140.1| 219 317 . KQ414851.1 1222717 1222352 - 250 M 46 138 S 0 2 5 0 2 I 0 67 3 0 2 S 1 1 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222353 1222717 250 - . gene_id 3 ; sequence gi|805795911|ref|XP_012143140.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1222578 1222717 . - . KQ414851.1 exonerate:protein2genome:local exon 1222578 1222717 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1222576 1222577 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222507 1222577 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1222507 1222508 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222353 1222506 . - . KQ414851.1 exonerate:protein2genome:local exon 1222353 1222506 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222353 1222717 250 - . alignment_id 3 ; Query gi|805795911|ref|XP_012143140.1| ; Align 1222718 220 138 ; Align 1222506 267 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795911|ref|XP_012143140.1| PREDICTED: odorant receptor 49a-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 236 Query range: 28 -> 155 Target range: 1225871 -> 1224024 29 : PheAspHisMetPheAspArgMetSerGlnLeuTrpGluIleAlaGluMetAsnGl : 47 ||| :::|||||| !||| !!:! !|||:!!:!: !||| !!.! PheArgLysLeuPheAspLeuMetValArgArgTrpLysLeuLeuGluAlaLysAs 1225871 : tttcgaaaattattcgatcTCATGGTACGAAGATGGAAACTGTTGGAAGCAAAGGA : 1225817 48 : yGluValGluValLeuLysGluValThrAspGluGlySerGlnMetGlySerMetP : 66 !|||:!!|||:!!||||||:!! !|||..!:!!|||! !::!:!: !!..!:!!! pGluIleGluIleLeuLysLysTyrThrSerLysGlyMetArgLeuArgGluLeuT 1225816 : CGAAATAGAGATACTGAAGAAATACACCAGTAAAGGGATGAGACTTAGAGAACTGT : 1225760 67 : heArg{S} >>>> Target Intron 1 >>>> {er}SerIleTrpIlePhe : 73 :!!:!{.} 1463 bp {.!}|||:!:|||||| !! yrLys{A}++ ++{sp}SerLeuTrpIleVal 1225759 : ACAAA{G}gt.........................ag{ac}tCGTTGTGGATAGTT : 1224276 74 : ThrIlePhePheLeuSerMetProLeuCysProIlePheLeuAspPheIleLeuPr : 92 !:!! ! !:!:!!|||.!.|||||| ! !!|||||| !!:!! !|| LeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAspValValAlaPr 1224275 : CTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCC : 1224219 93 : oLeuAsnGluThrArgAlaArgGluProLeuPheLysLeuAsnTyrMet<->ValA : 110 |||||||||||||||| !!|||..!! !|||.!! !:!!!:!|||!!: :!!| oLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleA 1224218 : GTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAG : 1224162 111 : spMetArgAspHisPhePheIleGluTyrPheHisSerAlaPheSerSerIleVal : 128 || ! !!!:||||||!:!! !! ! !!|||||| ! ! !||| !||| ! spGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSer 1224161 : ACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCC : 1224108 129 : ValValLeuIleThrAlaThrPheAspSerLeuTyrMetValIleIleHisTyrGl : 147 !! !:!!!!:! ! !.!! ! |||! !||||||!!:..!|||||| !:!! CysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLe 1224107 : TGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCT : 1224051 148 : yCysGlyLeuPheAlaLeuCysGly : 155 !|||||||||||||||:!!|||||| uCysGlyLeuPheAlaValCysGly 1224050 : TTGCGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: gi|805795911|ref|XP_012143140.1| 28 155 . KQ414851.1 1225871 1224024 - 236 M 39 117 S 0 1 5 0 2 I 0 1459 3 0 2 S 1 2 M 40 120 G 0 3 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1225871 236 - . gene_id 4 ; sequence gi|805795911|ref|XP_012143140.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1225754 1225871 . - . KQ414851.1 exonerate:protein2genome:local exon 1225754 1225871 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1225752 1225753 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1224291 1225753 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1224291 1224292 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1224025 1224290 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224290 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1225871 236 - . alignment_id 4 ; Query gi|805795911|ref|XP_012143140.1| ; Align 1225872 29 117 ; Align 1224289 69 120 ; Align 1224166 109 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795911|ref|XP_012143140.1| PREDICTED: odorant receptor 49a-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 222 Query range: 64 -> 155 Target range: 1234335 -> 1234059 65 : MetPheArgSerSerIleTrpIlePheThrIlePhePheLeuSerMetProLeuCy : 83 .!.||| !..!!!!:!! ! !|||! !:!! !!|||||| !:!:|||||| PhePheSerAspThrLeuLeuSerPheMetValValPheLeuLeuValProLeuVa 1234335 : TTCTTCTCAGATACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGT : 1234281 84 : sProIlePheLeuAspPheIleLeuProLeuAsnGluThrArgAlaArgGluProL : 102 ! ! !||||||||| !!:!!||||||||||||||||||||| !!|||:!!! ! lPheProPheLeuAspValValLeuProLeuAsnGluThrArgProArgGlnGlnG 1234280 : TTTTCCATTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAG : 1234224 103 : euPheLysLeuAsnTyrMet<->ValAspMetArgAspHisPhePheIleGluTyr : 119 !|||!:!:!!||||||:!: !!||| !|||:!!||||||! !! !||| lyPheArgValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyr 1234223 : GATTCAGAGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTAC : 1234170 120 : PheHisSerAlaPheSerSerIleValValValLeuIleThrAlaThrPheAspSe : 138 |||!!.! !|||!::.!!:!!:!!|||||||||:!!|||! ! !||| ! ||||| PheGlnLeuAlaTrpGlyAlaValValValValMetIleIleIleThrValAspSe 1234169 : TTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTC : 1234113 139 : rLeuTyrMetValIleIleHisTyrGlyCysGlyLeuPheAlaLeuCysGly : 155 ||||||||||:!!|||||||||:!!!.! !!|||:!!||||||:!!|||||| rLeuTyrMetIleIleIleHisHisAlaSerGlyMetPheAlaValCysGly 1234112 : GTTGTACATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTGTGCGGG : 1234060 vulgar: gi|805795911|ref|XP_012143140.1| 64 155 . KQ414851.1 1234335 1234059 - 222 M 44 132 G 0 3 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234335 222 - . gene_id 5 ; sequence gi|805795911|ref|XP_012143140.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234335 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234335 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234335 222 - . alignment_id 5 ; Query gi|805795911|ref|XP_012143140.1| ; Align 1234336 65 132 ; Align 1234201 109 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795911|ref|XP_012143140.1| PREDICTED: odorant receptor 49a-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 217 Query range: 67 -> 155 Target range: 1243863 -> 1243599 68 : SerSerIleTrpIlePheThrIlePhePheLeuSerMetProLeuCysProIlePh : 86 .!!!!!:!:!:: !|||:!!|||.!.|||:!!! !.!.|||||| !||| !.! GlyThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIl 1243863 : GGTACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAAT : 1243809 87 : eLeuAspPheIleLeuProLeuAsnGluThrArgAlaArgGluProLeuPheLysL : 105 .|||||| !!:!!! !||||||||||||||||||:!!||| ! :::...|||| eLeuAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysL 1243808 : ATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaat : 1243752 106 : euAsnTyrMetValAspMetArgAspHisPhePheIleGluTyrPheHisSerAla : 123 ||...|||:!! !!||||||... :::|||::: ||| !!:!!!!!!.! euGlnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGly 1243751 : tgcaataccTGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGC : 1243698 124 : PheSerSerIleValValValLeuIleThrAlaThrPheAspSerLeuTyrMetVa : 142 !::!!!|||.!!:!!..!:!!:!!:!!! ! !|||.!.|||:!!||||||:!!|| TrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValVa 1243697 : TGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGT : 1243641 143 : lIleIleHisTyrGlyCysGlyLeuPheAlaLeuCysGly : 155 ||||||||||:!! !|||||||||||||||:!!|||||| lIleIleHisHisThrCysGlyLeuPheAlaValCysGly 1243640 : AATCATTCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: gi|805795911|ref|XP_012143140.1| 67 155 . KQ414851.1 1243863 1243599 - 217 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243863 217 - . gene_id 6 ; sequence gi|805795911|ref|XP_012143140.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243863 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243863 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243863 217 - . alignment_id 6 ; Query gi|805795911|ref|XP_012143140.1| ; Align 1243864 68 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795911|ref|XP_012143140.1| PREDICTED: odorant receptor 49a-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 206 Query range: 217 -> 311 Target range: 1228764 -> 1228410 218 : AlaValGlnAlaValLeuHisMetAspArgProAsnGluPheIleAlaIleLeuMe : 236 :!! !!||| !:!!||| !:!!|||||||||!:!||| !||| ! !! !:! SerPheGlnIleMetLeuAlaLeuAspArgProSerGluAlaIleArgTyrSerVa 1228764 : TCTTTCCAGATAATGCTCGCCCTGGATAGACCGAGCGAAGCTATTAGATATTCTGT : 1228710 237 : tPheMetCysGlyGlnGlnPheHisGlnPheAlaLeuCysLeuProGlyGlnValL : 255 ! !!:!: ! ||| !||||||||| !||| !:!! !!||||||||||||..!| lValLeuGlyGlyAlaGlnPheHisLeuPheIleIleSerLeuProGlyGlnThrL 1228709 : GGTTCTTGGAGGTGCGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACAC : 1228653 256 : euIleAspArgSerLeuAspLeuIleAsn{A} >>>> Target Intron 1 > : 265 ||:!:|||!.!!!! ! |||! |||{|} 72 bp euValAspHisCysThrMetLeuThrAsn{A}-+ 1228652 : TCGTGGATCATTGTACCATGCTAACGAAC{G}at...................... : 1228620 266 : >>> {sp}IleTyrSerSerLysTrpTyrGlnThrProValLysTyrGlnArgTh : 281 {||}! !|||||||||! !||||||:!!..! !!!.!|||!:!||||||.. --{sp}ArgTyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgVa 1228619 : ...tt{AC}AGATACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGT : 1228503 282 : rIleLeuThrMetGlnIleArgCysSerLysAlaCysLysLeuThrAlaGlyGlyP : 300 !|||! !! !||||||||||||..! !||| !!|||! |||||||||||||||! lIleTyrMetMetGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyL 1228502 : AATTTACATGATGCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGAT : 1228446 301 : heTyrGluMetAsnMetGluAsnPheGlyAlaIle : 311 !.||||||||||||||||||||||||!.! !:!! euTyrGluMetAsnMetGluAsnPheAlaAsnVal 1228445 : TGTACGAAATGAACATGGAGAACTTTGCAAACGTT : 1228411 vulgar: gi|805795911|ref|XP_012143140.1| 217 311 . KQ414851.1 1228764 1228410 - 206 M 47 141 S 0 1 5 0 2 I 0 68 3 0 2 S 1 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1228764 206 - . gene_id 7 ; sequence gi|805795911|ref|XP_012143140.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1228623 1228764 . - . KQ414851.1 exonerate:protein2genome:local exon 1228623 1228764 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228621 1228622 . - . intron_id 1 ; splice_site "AT" KQ414851.1 exonerate:protein2genome:local intron 1228551 1228622 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1228551 1228552 . - . intron_id 0 ; splice_site "TT" KQ414851.1 exonerate:protein2genome:local cds 1228411 1228550 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228550 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1228764 206 - . alignment_id 7 ; Query gi|805795911|ref|XP_012143140.1| ; Align 1228765 218 141 ; Align 1228549 266 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795911|ref|XP_012143140.1| PREDICTED: odorant receptor 49a-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 203 Query range: 28 -> 171 Target range: 1240295 -> 1239773 29 : PheAspHisMetPheAspArgMetSerGlnLeuTrpGluIleAlaGluMetAsnGl : 47 ||| :::::: !:!! !:!! !|||||| !..!!!:!:!.. PheLysAsnLeuCysIleSerValValGluLysTrpGluGluLeuArgIleSerAs 1240295 : tttaaaaatttatgcattTCTGTGGTGGAAAAATGGGAAGAGTTGAGGATCAGTAA : 1240241 48 : yGluValGluValLeuLysGluValThrAspGluGlySerGlnMetGlySerMetP : 66 !|||:!!...||||||:!!|||||||||! !:!!||||||:::... ...:::: nGluLeuSerValLeuGluGluValThrAlaGlnGlySerLysPheValGlnLeuT 1240240 : CGAGTTAAGCGTGCTGGAAGAAGTTACCGCCCAAGGGAGcaaatttgtacaattgt : 1240184 67 : heArg{S} >>>> Target Intron 1 >>>> {er}SerIleTrpIlePhe : 73 :!|||{!} 90 bp { !} !:!!!:: yrArg{I}+- ++{le}ValLeuPheSerVal 1240183 : aCAGA{A}gc.........................ag{TC}GTTTTATTTTCcgtt : 1240073 74 : ThrIlePhePheLeuSerMetProLeuCysProIlePheLeuAspPheIleLeuPr : 92 ......|||||| !:!:|||::: ||| ...||||||.!!:!! !|| LeuPheIlePheLeuValValProIlePheProProLeuLeuAspIleLeuLysPr 1240072 : ttgttcatttttctggTGGTTCcgatttttcctcctcttctggACATTTTAAAACC : 1240016 93 : oLeuAsnGluThrArgAlaArgGluProLeuPheLysLeuAsnTyrMet<->ValA : 110 ||||||||||||||||||||||::: :::||||||:::||||||:!! :!!| oLeuAsnGluThrArgAlaArgGlnLysIlePheLysValAsnTyrLeuIleIleA 1240015 : TTTAAACGAAACCCGAGCACgccagaaaatattcaaagttaaTTACCTGATCATTG : 1239959 111 : spMetArgAspHisPhePheIleGluTyrPheHisSerAlaPheSerSerIleVal : 128 ||! ! !!!:!!. !.!.||| !|||||||||! !:!!!::!!!!!!|||..! spArgAspGluGlnAlaLeuIleThrTyrPheHisLeuSerTrpThrThrIleThr 1239958 : ACAGGGATGAACAAGCTCTGATCACATATTTTCACTTGTCTTGGACAACTATCACT : 1239905 129 : ValValLeuIleThrAlaThrPheAspSerLeuTyrMetValIleIleHisTyrGl : 147 :!!! !:!! !..! !!:!! !!:! !:!!|||:!::!!:!!||||||:!! LeuGlyIleSerValLeuSerSerGluLeuIleTyrValLeuLeuIleHisHisTh 1239904 : CTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGTCCTTCTTATTCATCATAC : 1239848 148 : yCysGlyLeuPheAlaLeuCysGlyTyrGlnValLysLysAlaAlaGluIleAlaG : 166 ! !!||||||||||||:!!..!||| ||| .!!..!...||| rSerGlyLeuPheAlaValAlaGly***IlePheLysHisThrCysAsnIleAsnG 1239847 : CAGCGGTCTGTTTGCTGTGGCTGggtaaatattcaaacataCCTGTAacataaacg : 1239791 167 : lyThrAsnAlaThrIle : 171 ||| ||| luGluAsnIleIleIle 1239790 : aagaaaatataattatt : 1239774 vulgar: gi|805795911|ref|XP_012143140.1| 28 171 . KQ414851.1 1240295 1239773 - 203 M 39 117 S 0 1 5 0 2 I 0 86 3 0 2 S 1 2 M 40 120 G 0 3 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239774 1240295 203 - . gene_id 8 ; sequence gi|805795911|ref|XP_012143140.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1240178 1240295 . - . KQ414851.1 exonerate:protein2genome:local exon 1240178 1240295 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1240176 1240177 . - . intron_id 1 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1240088 1240177 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1240088 1240089 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1239774 1240087 . - . KQ414851.1 exonerate:protein2genome:local exon 1239774 1240087 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239774 1240295 203 - . alignment_id 8 ; Query gi|805795911|ref|XP_012143140.1| ; Align 1240296 29 117 ; Align 1240086 69 120 ; Align 1239963 109 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795911|ref|XP_012143140.1| PREDICTED: odorant receptor 49a-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 184 Query range: 266 -> 326 Target range: 1242796 -> 1242524 267 : TyrSerSerLysTrpTyrGlnThrProValLysTyrGlnArgThrIleLeuThrMe : 285 |||!:!|||! !|||||||||||||||||| ! !|||!:!! !:!!! !! !:! TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIleVa 1242796 : TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATATAGT : 1242742 286 : tGlnIleArgCysSerLysAlaCysLysLeuThrAlaGlyGlyPheTyrGluMetA : 304 :|||||||||! !.!!||| !!|||||||||..!|||||||||!!.|||||||||| lGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluMetA 1242741 : ACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAATGA : 1242685 305 : snMetGluAsnPheGlyAla >>>> Target Intron 1 >>>> IleIleL : 313 ||!!:||||||||||||:!! 92 bp !.!!| snIleGluAsnPheGlySer++ ++ThrPheL 1242684 : ACATTGAGAATTTTGGATCAgt.........................agacTTTCA : 1242566 314 : ysThrSerValSerTyrPheThrValLeuLeuSerLeuArg : 326 |||||!!!:!!||||||||||||:!!|||||||||!!!!:! ysThrCysIleSerTyrPheThrMetLeuLeuSerPheLys 1242565 : AAACCTGCATATCGTACTTTACGATGCTCTTATCATTCAAA : 1242525 vulgar: gi|805795911|ref|XP_012143140.1| 266 326 . KQ414851.1 1242796 1242524 - 184 M 44 132 5 0 2 I 0 88 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242525 1242796 184 - . gene_id 9 ; sequence gi|805795911|ref|XP_012143140.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1242665 1242796 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242796 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242525 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242525 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242525 1242796 184 - . alignment_id 9 ; Query gi|805795911|ref|XP_012143140.1| ; Align 1242797 267 132 ; Align 1242573 311 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795911|ref|XP_012143140.1| PREDICTED: odorant receptor 49a-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 219 -> 295 Target range: 1238825 -> 1238370 220 : GlnAlaValLeuHisMetAspArgProAsnGluPheIleAlaIleLeuMetPheMe : 238 |||.!!||| !:!!!!:||| !|||!..! ! !:!: !! ! !! ! !! GlnThrValGlyAsnIleAspAspProThrValAlaLeuArgAsnAlaThrValTr 1238825 : CAGACAGTGGGGAATATAGACGATCCGACAGTAGCTTTGAGAAACGCTACGGTCTG : 1238771 239 : tCysGlyGlnGlnPheHisGlnPheAlaLeuCysLeuProGlyGlnValLeuIleA : 257 ! ! !.!:!!|||.!!|||! !||| !:!! !!:!!||||||||||||||||||| pGlyAlaLysGlnIleHisLeuPheIleIleSerIleProGlyGlnValLeuIleA 1238770 : GGGGGCTAAGCAAATTCACCTGTTCATCATCAGTATACCTGGACAGGTGCTTATAG : 1238714 258 : spArgSerLeuAspLeuIleAsnAsp{Il} >>>> Target Intron 1 >>> : 266 ||!.!!!!:!!!!:||| !||||||{||} 227 bp spHisCysValGluLeuSerAsnAsp{Il}+- 1238713 : ATCATTGTGTGGAGCTGTCAAACGAC{AT}ga........................ : 1238683 267 : > {e}TyrSerSerLysTrpTyrGlnThrProValLysTyrGlnArgThrIleLe : 283 {|}||||||||||||||||||.!.!.! !:!!:!! !:!!!:!! !:!!! ++{e}TyrSerSerLysTrpTyrAsnAsnGlyMetGluAlaLysLysIleLeuGl 1238682 : .ag{A}TACTCCTCCAAATGGTACAATAACGGAATGGAAGCTAAGAAAATACTTCA : 1238409 284 : uThrMetGlnIleArgCysSerLysAlaCysLysLeu : 295 !..!|||||| |||..!|||||| !!|||! !||| nValMetGlnGlnArgAlaSerLysProCysIleLeu 1238408 : AGTAATGCAACAGAGAGCTAGCAAACCGTGTATATTA : 1238371 vulgar: gi|805795911|ref|XP_012143140.1| 219 295 . KQ414851.1 1238825 1238370 - 123 M 46 138 S 0 2 5 0 2 I 0 223 3 0 2 S 1 1 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1238371 1238825 123 - . gene_id 10 ; sequence gi|805795911|ref|XP_012143140.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1238686 1238825 . - . KQ414851.1 exonerate:protein2genome:local exon 1238686 1238825 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1238684 1238685 . - . intron_id 1 ; splice_site "GA" KQ414851.1 exonerate:protein2genome:local intron 1238459 1238685 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1238459 1238460 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1238371 1238458 . - . KQ414851.1 exonerate:protein2genome:local exon 1238371 1238458 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1238371 1238825 123 - . alignment_id 10 ; Query gi|805795911|ref|XP_012143140.1| ; Align 1238826 220 138 ; Align 1238458 267 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805809810|ref|XP_003705978.2| PREDICTED: putative odorant receptor 92a [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 342 -> 399 Target range: 292380 -> 292551 343 : LeuLeuAlaLysSerGlnAlaIleAlaValAlaAlaTyrAsnSerProTrpTyrArgT : 362 :!!||| !:!!.!!...! !|||||| !|||:!!|||:!!!!! !||||||!.! ValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnL 292381 : GTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATC : 292438 363 : rpSerAlaSerSerArgThrProIleAlaValLeuLeuValArgAlaGlnLysProAl : 381 ! !! ! !!!.! ! ! !|||!.!:!!:!!|||!.!! !.!!:!! ! ||| euProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIl 292439 : TGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGAT : 292495 382 : aArgLeuThrAlaGlyLysPheValValLeuSerLeuAspThrPheGlySerMet : 399 !!:!|||||||||||||||.!. !!||||||||||||:!!|||||||||:!!:!: eLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaVal 292496 : CAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTA : 292551 vulgar: gi|805809810|ref|XP_003705978.2| 342 399 . KQ414889.1 292380 292551 + 105 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292381 292551 105 + . gene_id 1 ; sequence gi|805809810|ref|XP_003705978.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292381 292551 . + . KQ414889.1 exonerate:protein2genome:local exon 292381 292551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292381 292551 105 + . alignment_id 1 ; Query gi|805809810|ref|XP_003705978.2| ; Align 292381 343 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793961|ref|XP_012142611.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 536 Query range: 112 -> 364 Target range: 1707013 -> 1709252 113 : AsnGluSerGluArgValLeuProPheLysMetTyrLeuAsnValProIleGlnAl : 131 |||||||||:!:|||:!!||| ! !!!!..!.!:::!!:!! !!|||! ! AsnGluSerAspArgIleLeuIleValAsnPheTrpIleAspPheProThrThrMe 1707014 : aatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGACTTTCCGACAACCAT : 1707068 132 : aThrProTyrPheGluIleAlaTyrIleThrGln >>>> Target Intron 1 : 143 !|||||||||!:!|||||| !!:!! :!!||| 276 bp tThrProTyrTyrGluIleLeuPheThrSerGln++ 1707069 : GACACCATACTATGAGATATTATTTACGTCGCAGgt.................... : 1707106 144 : >>>> ValLeuAlaLeuCysProValGlyPheSerTyrPheSerLeuAspAsnV : 159 |||!!! !:!! !||| !!.!.||||||.!!!!!:!!|||||| ++ValPheIleValMetTyrValCysIleSerTyrLeuCysIleAspAsnP 1707107 : .....agGTTTTTATCGTAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATT : 1707428 160 : alLeuCysIleIleAsnLeuHisIleAlaGlyGlnPheArgIleLeuGlnTyrArg : 177 !!||||||!!:||||||||||||! !||| !|||||||||||||||||||||||| heLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArg 1707429 : TTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGA : 1707482 178 : LeuSerAspLysTyrSerGlyGlnValGlnAsnGlyLeuAspGlnLysSerAspLe : 196 ||||||:!! !! !.!!!.!.!.! !!::!:: ...|||... ! LeuSerAsnValCysGlyAlaAsnGluArgSerAspLysIleSerLysLysThrPr 1707483 : CTGTCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaaacaCC : 1707539 197 : uTyrLeuLysAspAsnAlaProAspValPheLysSerTyrIleArgGlnHisGlnA : 215 !! ! !..!|||.!...! !! ! !||||||!:!! !|||!:!|||||||||| oSerAsnSerAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnA 1707540 : GTCCAATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAG : 1707596 216 : laLeuIleThrTyrCysAsnGluLeuGlnGluValPheGlyIleIleValLeuAla : 233 |||||||| !||||||||||||||||||||||||||||||:!!.!!||||||||| laLeuIleGluTyrCysAsnGluLeuGlnGluValPheGlyLeuPheValLeuAla 1707597 : CACTCATAGAATACTGTAACGAACTTCAAGAGGTGTTCGGTTTATTTGTGCTTGCA : 1707650 234 : LeuTyrSerGlnValMetThrPheSerMetLeuIleCysLeuAspGlyPheGlnVa : 252 ||||||:!! !||||||:!!|||!!:||||||||||||!:! !|| ---------GlnValLeuLeuPheSerLeuLeuMetCysLeuAspGlyTyrLeuVa 1707651 : ---------CAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGGATATTTGGT : 1707698 253 : lLeu >>>> Target Intron 2 >>>> LeuLeuAspLeuIleGlnArgLy : 261 |:!! 457 bp ! ! !! !|||..!!:!:: lMet++ ++GluAspThrProIleMetGlnAr 1707699 : GATGgt.........................agGAAGATACTCCCATTATGCAGCG : 1708182 262 : sValIlePhePhePheHisLeuLeuThrThrValCysGlnLeuIleMetPheSerT : 280 ::!!! !|||!!.||||||||| ! ! !:!!|||||||||:!:||||||!!!| gLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuMetPheThrT 1708183 : CCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGATGTTCACCT : 1708239 281 : yrSerCysAspCysIleIleArgGluSerValAsnLeuAlaThrAlaAlaPheSer : 298 ||||||||||||||:!:||||||||||||:!!|||:!!|||!.!||| !!:!..! yrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIleTyrAsp 1708240 : ACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATATACGAC : 1708293 299 : GlyProTrpLeuLeuLeuProSerSerLysGlyIleAspAsnLeuLysLysAspPh : 317 !! !!|||:!!! !||||||! !..!!:!..! ! |||::!||||||!! CysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAspLe 1708294 : TGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTT : 1708350 318 : eIleMetLeuIleMetArgSerAsnLysProCysTyrIleSerGlyLeuGlyPheP : 336 .! !.!.:!!||| ||||||!.. !||||||! !:!!!!!!.!! !||||||| uThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPheP 1708351 : GACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCT : 1708407 337 : heIleValSerLeuGluThrSerThrArg >>>> Target Intron 3 >>>> : 346 || !|||||||||||||||! !||| ! 759 bp heProValSerLeuGluThrTyrThrSer++ 1708408 : TCCCTGTGTCACTGGAAACGTACACTTCGgt......................... : 1708439 347 : ValIleThrThrAlaGlySerTyrPheThrLeuLeuGlnGlnThrGlnSerAsn : 363 :!!:!!!:!||||||!.!||||||||||||||||||!:!:!! !:!!:!!.!. ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgLysGlnGluAlaGlu 1708440 : agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTACGAAAACAAGAAGCAGAA : 1709247 364 : Ile : 364 ||| Ile 1709248 : ATA : 1709252 vulgar: gi|805793961|ref|XP_012142611.1| 112 364 . KQ414915.1 1707013 1709252 + 536 M 30 90 5 0 2 I 0 272 3 0 2 M 91 273 G 3 0 M 17 51 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707014 1709252 536 + . gene_id 1 ; sequence gi|805793961|ref|XP_012142611.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1707014 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707014 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 3 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709252 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709252 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1707014 1709252 536 + . alignment_id 1 ; Query gi|805793961|ref|XP_012142611.1| ; Align 1707014 113 90 ; Align 1707380 143 273 ; Align 1707653 237 51 ; Align 1708161 254 276 ; Align 1709196 346 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793961|ref|XP_012142611.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 440 Query range: 105 -> 364 Target range: 1694346 -> 1696269 106 : LeuLeuValAsnLeuPheMetAsnGluSerGluArgValLeuProPheLysMetTy : 124 !!!|||!.!|||:!! ! |||:!!|||||||||:!!|||||||||!!.|||!: PheLeuAlaAsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTr 1694347 : TTTTTAGCAAATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTG : 1694401 125 : rLeuAsnValProIleGlnAlaThrProTyrPheGluIleAlaTyrIleThrGln : 143 ::!!:!! !!|||! ! ! !:!!||||||!:!|||:!! !!:!|||! !||| pValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGln+ 1694402 : GGTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGg : 1694458 144 : >>>> Target Intron 1 >>>> ValLeuAlaLeuCysProValGlyPheS : 152 409 bp ..!|||..!:!!! !! !||||||.!.! + ++ThrLeuCysValTyrHisValGlyIleC 1694459 : t.........................agACACTTTGCGTGTACCATGTCGGTATAT : 1694894 153 : erTyrPheSerLeuAspAsnValLeuCysIleIleAsnLeuHisIleAlaGlyGln : 170 !!|||.!.!!!!!!||||||:!!||| !!:!!:!:|||||||||:!:||| !||| ysTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGln 1694895 : GTTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAA : 1694948 171 : PheArgIleLeuGlnTyrArgLeuSerAspLysTyrSerGlyGlnValGlnAsnGl : 189 |||||||||||||||||||||!!!! !:!! ! !!:!! ! ! !:!!.!. PheArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLysGlnTh 1694949 : TTTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAAC : 1695005 190 : yLeuAspGlnLysSerAspLeuTyrLeuLysAspAsnAlaProAspValPhe<->< : 207 ! !! !:::::: :::::: ! !! !:!! !.!! !||| !!:! rAspGlyArgGluLeuGluIleGlyTyrThrAsnPheThrValAspSerTyrLeuG 1695006 : AGACGGTcgagaattggaaattggtTACACAAATTTCACAGTCGATAGTTACTTAC : 1695062 208 : -><->LysSerTyrIleArgGlnHisGlnAlaLeuIleThrTyrCysAsnGluLeu : 223 ||||||! !:!:!:! ! ||||||||||||! ! !||||||!!.:!!||| lnLeuLysSerCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeu 1695063 : AATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTG : 1695116 224 : GlnGluValPheGlyIleIleValLeuAlaLeuTyrSerGlnValMetThrPheSe : 242 :!!.!.:!!|||..!:!::!!|||||| .!!||||||:!: !.!.:! GluAsnIlePheSerLeuLeuValLeu---------GlyGlnValLeuPheLeuAl 1695117 : GAGAACATATTTTCGTTGCTTGTGCTT---------GGACAAGTGCTTTTCCTAGC : 1695164 243 : rMetLeuIleCysLeuAspGlyPheGlnValLeuLeu >>>> Target Intro : 255 !|||:!!:!!||||||! |||!:!|||:!!!!!||| 415 bp aMetValLeuCysLeuValGlyTyrGlnLeuPheLeu++ 1695165 : CATGGTACTTTGCCTCGTGGGATATCAGCTATTTCTGgt................. : 1695205 256 : n 2 >>>> LeuAspLeu<->IleGlnArgLysValIlePhePhePheHisLeuL : 269 !|||! ! !..!|||!!.||| !!!. ! .!!:!!||| ++ThrAspSerProProSerArgAsnValGlyLeuValLeuAsnLeuA 1695206 : ........agACAGACTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGG : 1695663 270 : euThrThrValCysGlnLeuIleMetPheSerTyrSerCysAspCysIleIleArg : 287 ! !|||:!!|||||||||.!!||||||!!!|||||||||||| !!:!:! !||| laGlyThrLeuCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArg 1695664 : CAGGCACTTTGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGA : 1695717 288 : GluSerValAsnLeuAlaThrAlaAlaPheSerGlyProTrpLeuLeuLeuProSe : 306 ||||||:!!:!!:!!::!! !|||!.!|||:!! !!|||||| ! !||||||! GluSerMetAspValSerArgAlaValPheAlaArgProTrpAlaAsnLeuProMe 1695718 : GAGAGCATGGACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAAT : 1695774 307 : rSerLysGlyIleAspAsnLeuLysLysAspPheIleMetLeuIleMetArgSerA : 325 !..!!:!..! ! !:!:!!::!:!!..!.!.:!!|||:!!||||||||||||| tAspArgAsnGlyLysSerValArgGlnSerMetLeuMetValIleMetArgSerA 1695775 : GGATAGAAATGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGA : 1695831 326 : snLysProCysTyrIleSerGlyLeuGlyPhePheIleValSerLeuGluThrSer : 343 ||!:! !|||! !:!!!!!!.! !||||||||| !|||||||||||||||! ! snArgCysCysCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyr 1695832 : ACAGGTGTTGCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTAC : 1695885 344 : ThrArg >>>> Target Intron 3 >>>> ValIleThrThrAlaGlySer : 352 ||| !! 319 bp |||:!!!:!|||||| !||| ThrGly++ ++ValLeuSerThrAlaMetSer 1695886 : ACTGGGgt.........................agGTCCTCAGCACTGCAATGTCA : 1696231 353 : TyrPheThrLeuLeuGlnGlnThrGlnSerAsnIle : 364 |||||||||||||||::!|||:!! ! !!:!||| TyrPheThrLeuLeuArgGlnSerThrMetSerIle 1696232 : TACTTTACACTACTGAGACAATCGACTATGAGCATA : 1696269 vulgar: gi|805793961|ref|XP_012142611.1| 105 364 . KQ414915.1 1694346 1696269 + 440 M 37 111 5 0 2 I 0 405 3 0 2 M 64 192 G 0 9 M 26 78 G 3 0 M 19 57 5 0 2 I 0 411 3 0 2 M 3 9 G 0 3 M 88 264 5 0 2 I 0 315 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694347 1696269 440 + . gene_id 2 ; sequence gi|805793961|ref|XP_012142611.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694347 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694347 1694457 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 9 ; deletions 3 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 2 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696269 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696269 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694347 1696269 440 + . alignment_id 2 ; Query gi|805793961|ref|XP_012142611.1| ; Align 1694347 106 111 ; Align 1694867 143 192 ; Align 1695068 207 78 ; Align 1695146 236 57 ; Align 1695618 255 9 ; Align 1695630 258 264 ; Align 1696213 346 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793961|ref|XP_012142611.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 391 Query range: 30 -> 258 Target range: 1698568 -> 1699983 31 : AsnLeuLeuSerValLeuValProLeuIleLysLeuLeuAlaLeuLeuProArgLy : 49 |||:!!|||!!!:!!:!!:!! !|||:!!||||||!!!!.!:!!!!! !!.!!: AsnIleLeuCysLeuIleMetValLeuLeuLysLeuPheValValPheIleHisAr 1698569 : AACATTCTCTGCCTGATTATGGTACTGTTAAAGCTGTTCGTTGTATTCATACACAG : 1698623 50 : sLysLysLeuPheGlyLeuIleAlaTyrMetValArgAsnPheLeuLysAlaAspT : 68 !|||:!!!!!.!!! !|||:::...|||||| :::|||||| ! !:!!| gLysGluPheIleGluLeuLeuValTyrMetTyrLysAsnPheTrpHisLeuAsnT 1698624 : GAAAGAATTCATCGAACTgcttgtatatatgtacaaaaatttttggcACCTCAATT : 1698680 69 : yrAspAspPheGluThrSerIleLeuThrThrCysLysArgLysCysSerPhePhe : 86 ||||| ! !||| ! !:!:||| ! !|||!:!|||! !!!!!.!.! ! yrAspCysAsnGluLeuLeuLeuLeuGlnAspCysArgArgIleSerThrIleCys 1698681 : ACGATTGCAACGAACTACTACTGCTGCAAGACTGCAGAAGAATTAGCACTATATGT : 1698734 87 : ValCysSerSerValCysPheThrGluLeuThrIleValSerTyrValCysAlaPr : 105 :!! ! !! ! !! !! !.!!:!! !|||||||||||||||||| .!!|| IleThrLeuIleAsnPheCysAlaGlnGlyThrIleValSerTyrValLeuThrPr 1698735 : ATCACGTTGATTAACTTCTGTGCTCAAGGCACAATTGTCAGCTACGTGCTAACACC : 1698791 106 : oLeuLeu{V} >>>> Target Intron 1 >>>> {al}AsnLeuPheMetA : 113 |:!!:!!{!} 232 bp {.!}|||::: | oIleIle{A}++ ++{la}AsnIleGlyArgA 1698792 : TATTATA{G}gt.........................ag{ca}aatattggaagaa : 1699047 114 : snGluSerGluArgValLeuProPheLysMetTyrLeuAsnValProIleGlnAla : 131 ||...|||!!:|||||||||||||||!!.|||!:::!!:!!:!!|||:!:...!.! snSerSerAspArgValLeuProPheAsnMetTrpValAspLeuProLeuSerVal 1699048 : aCAGTTCCGATAGAGTGCTCCCATTCAACATGTGGGTTGATTTGCCGCTGTCTGTG : 1699101 132 : ThrProTyrPheGluIleAlaTyrIleThrGln >>>> Target Intron 2 : 143 :!!||| !:!||||||!.!!:!:!: !||| 499 bp SerProThrTyrGluIleValPheValLeuGln++ 1699102 : TCACCAACGTACGAAATAGTGTTCGTGCTTCAGgt..................... : 1699139 144 : >>>> ValLeuAlaLeuCysProValGlyPheSerTyrPheSerLeuAspAsnVa : 159 ||||||:!!|||! !! !|||||| ! !!!|||.!!!!!!!!||||||:! ++ValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLe 1699140 : ....agGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCT : 1699684 160 : lLeuCysIleIleAsnLeuHisIleAlaGlyGlnPheArgIleLeuGlnTyrArgL : 178 !||||||:!:!!:||||||||| ||| !||||||||||||||||||||||||| uLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgL 1699685 : TTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGT : 1699741 179 : euSer<-><-><->AspLysTyrSerGlyGlnValGlnAsnGlyLeuAspGlnLys : 193 ||||| |||! ! !!!!! !||||||.!.:!!..! !..!... ! euSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAla 1699742 : TATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCA : 1699795 194 : SerAspLeuTyrLeuLysAspAsnAlaProAspValPheLysSerTyrIleArgGl : 212 :!! ! ! !!!! !!!:|||..! ! ! !.!||||||!:!! !:!!||||| AlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGl 1699796 : GCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACA : 1699852 213 : nHisGlnAlaLeuIleThrTyrCysAsnGluLeuGlnGluValPheGlyIleIleV : 231 ||||||| !! !||||||||||||:!!..!|||.!.|||:!!||| !:!!|||| nHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleV 1699853 : ACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTG : 1699909 232 : alLeuAlaLeuTyrSerGlnValMetThrPheSerMetLeuIleCysLeuAspGly : 249 ||||| .!!!!.:!!:!:..!||||||:!:||||||||||||! !||| alLeu---------GlyHisIleLeuValPheSerLeuLeuIleCysLeuValGly 1699910 : TACTC---------GGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGA : 1699954 250 : PheGlnValLeuLeuLeuAspLeuIle : 258 ||||||||||||:!! !:!!:!!||| PheGlnValLeuValGluAsnIleIle 1699955 : TTCCAAGTGCTCGTAGAAAACATCATC : 1699983 vulgar: gi|805793961|ref|XP_012142611.1| 30 258 . KQ414915.1 1698568 1699983 + 391 M 77 231 S 0 1 5 0 2 I 0 228 3 0 2 S 1 2 M 34 102 5 0 2 I 0 495 3 0 2 M 37 111 G 0 9 M 53 159 G 3 0 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1698569 1699983 391 + . gene_id 3 ; sequence gi|805793961|ref|XP_012142611.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1698569 1698800 . + . KQ414915.1 exonerate:protein2genome:local exon 1698569 1698800 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1698801 1698802 . + . intron_id 1 ; splice_site "Gt" KQ414915.1 exonerate:protein2genome:local intron 1698801 1699032 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699031 1699032 . + . intron_id 0 ; splice_site "Ag" KQ414915.1 exonerate:protein2genome:local cds 1699033 1699136 . + . KQ414915.1 exonerate:protein2genome:local exon 1699033 1699136 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699137 1699138 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699137 1699635 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1699634 1699635 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699636 1699983 . + . KQ414915.1 exonerate:protein2genome:local exon 1699636 1699983 . + . insertions 9 ; deletions 3 KQ414915.1 exonerate:protein2genome:local similarity 1698569 1699983 391 + . alignment_id 3 ; Query gi|805793961|ref|XP_012142611.1| ; Align 1698569 31 231 ; Align 1699035 109 102 ; Align 1699636 143 111 ; Align 1699756 180 159 ; Align 1699915 236 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793961|ref|XP_012142611.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 329 Query range: 199 -> 347 Target range: 1712071 -> 1712651 200 : AspAsnAlaProAspValPheLysSerTyrIleArgGlnHisGlnAlaLeuIleTh : 218 ||||||:!! !||||||||||||!!!! !:!!||||||||||||:!!|||!!:.! AspAsnSerTyrAspValPheLysArgCysValArgGlnHisGlnSerLeuMetAl 1712072 : GATAACTCTTACGACGTTTTCAAAAGATGCGTTCGTCAACATCAATCTCTGATGGC : 1712126 219 : rTyrCysAsnGluLeuGlnGluValPheGlyIleIleValLeuAlaLeuTyrSerG : 237 !!:!|||...:::|||:::|||:::|||.!!!!:|||:!!||| .!!| aPheCysGluLysLeuGluGluMetPheSerMetIleIleLeu---------GlyG 1712127 : TTTCTgcgagaaactcgaagaaatgTTCAGTATGATTATACTG---------GGGC : 1712174 238 : lnValMetThrPheSerMetLeuIleCysLeuAspGlyPheGlnValLeuLeuLeu : 255 ||:!!:!:..!||||||!!:!!!!!:|||||||||! !! !||||||||||||:!! lnLeuLeuValPheSerIlePheMetCysLeuAspValCysGlnValLeuLeuVal 1712175 : AATTGTTAGTGTTCAGTATTTTTATGTGTCTCGACGTGTGCCAAGTACTTCTGGTT : 1712228 256 : AspLeuIle{G} >>>> Target Intron 1 >>>> {ln}ArgLysValIl : 263 ..!! !|||{.} 145 bp {..}!:!:!!:::|| SerSerIle{S}+- -+{er}LysGlnMetIl 1712229 : AGTTCAATT{A}gc.........................gg{GT}AAACAGAtgat : 1712397 264 : ePhePhePheHisLeuLeuThrThrValCysGlnLeuIleMetPheSerTyrSerC : 282 |||| ||||||||| ! ! !:!!|||||||||:!:||||||!!!||||||| ePheThrPheHisLeuAlaGlyCysMetCysGlnLeuLeuMetPheThrTyrSerC 1712398 : tttcacgtttcacctAGCGGGATGTATGTGTCAATTGCTGATGTTTACGTACAGCT : 1712454 283 : ysAspCysIleIleArgGluSerValAsnLeuAlaThrAlaAlaPheSerGlyPro : 300 ||||||||||||||! !||||||:!!|||:!!.!! !|||!.!!:!..!|||||| ysAspCysIleIleThrGluSerLeuAsnValThrGluAlaValTyrAspGlyPro 1712455 : GCGATTGTATAATAACGGAAAGTTTGAACGTGACGGAAGCGGTGTACGATGGACCA : 1712508 301 : TrpLeuLeuLeuProSerSerLysGlyIleAspAsnLeuLysLysAspPheIleMe : 319 |||! !! !||||||! !|||! ! !! ! ! :!!!:!||||||!!.|||:! TrpProArgLeuProMetSerThrArgGlyArgMetIleArgLysAspLeuIleLe 1712509 : TGGCCACGTTTGCCAATGAGCACGAGAGGAAGAATGATAAGGAAGGATTTGATACT : 1712565 320 : tLeuIleMetArgSerAsnLysProCysTyrIleSerGlyLeuGlyPhePheIleV : 338 ::!!|||!!:||||||!.. !||||||! !:!:!!!!.! !|||||||||:!!: uValIleIleArgSerArgValProCysCysLeuThrAlaArgGlyPhePheValI 1712566 : CGTTATCATAAGATCGAGAGTACCTTGTTGCTTGACCGCCAGAGGATTCTTCGTAA : 1712622 339 : alSerLeuGluThrSerThrArgValIle : 347 !!||||||||||||! !|||!:!|||||| leSerLeuGluThrTyrThrLysValIle 1712623 : TATCTTTGGAAACGTATACGAAGGTAATT : 1712651 vulgar: gi|805793961|ref|XP_012142611.1| 199 347 . KQ414915.1 1712071 1712651 + 329 M 33 99 G 3 0 M 23 69 S 0 1 5 0 2 I 0 141 3 0 2 S 1 2 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712072 1712651 329 + . gene_id 4 ; sequence gi|805793961|ref|XP_012142611.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1712072 1712240 . + . KQ414915.1 exonerate:protein2genome:local exon 1712072 1712240 . + . insertions 0 ; deletions 3 KQ414915.1 exonerate:protein2genome:local splice5 1712241 1712242 . + . intron_id 1 ; splice_site "GC" KQ414915.1 exonerate:protein2genome:local intron 1712241 1712385 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1712384 1712385 . + . intron_id 0 ; splice_site "GG" KQ414915.1 exonerate:protein2genome:local cds 1712386 1712651 . + . KQ414915.1 exonerate:protein2genome:local exon 1712386 1712651 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712072 1712651 329 + . alignment_id 4 ; Query gi|805793961|ref|XP_012142611.1| ; Align 1712072 200 99 ; Align 1712171 236 69 ; Align 1712388 260 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793961|ref|XP_012142611.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 224 Query range: 259 -> 346 Target range: 1702977 -> 1703238 260 : ArgLysValIlePhePhePheHisLeuLeuThrThrValCysGlnLeuIleMetPh : 278 |||::!:!!! !||| ! ||||||:!!:!! !!:!:!!|||||||||:!::!:|| ArgArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLeuLeuPh 1702978 : AGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATTGCTATT : 1703032 279 : eSerTyrSerCysAspCysIleIleArgGluSerValAsnLeuAlaThrAlaAlaP : 297 |!!!|||||||||||| !!:!:|||..!||||||..!|||:!!!.!|||||| !! eThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaIleT 1703033 : TACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGATAT : 1703089 298 : heSerGlyProTrpLeuLeuLeuProSerSerLysGlyIleAspAsnLeuLysLys : 315 :! !|||||||||:!!! !||||||! !..!|||!.! ! !..|||!:!!:! yrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArgArg 1703090 : ACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGAAGA : 1703143 316 : AspPheIleMetLeuIleMetArgSerAsnLysProCysTyrIleSerGlyLeuGl : 334 |||!!.! !|||:!!|||:!:||||||!..||| !! !!! !:!!!!!!.! !|| AspLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSerGl 1703144 : GACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAGCGG : 1703200 335 : yPhePheIleValSerLeuGluThrSerThrArgVal : 346 ||||||| !|||||||||||||||!!!|||! !||| yPhePheProValSerLeuGluThrCysThrThrVal 1703201 : ATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGGTA : 1703238 vulgar: gi|805793961|ref|XP_012142611.1| 259 346 . KQ414915.1 1702977 1703238 + 224 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702978 1703238 224 + . gene_id 5 ; sequence gi|805793961|ref|XP_012142611.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702978 1703238 . + . KQ414915.1 exonerate:protein2genome:local exon 1702978 1703238 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702978 1703238 224 + . alignment_id 5 ; Query gi|805793961|ref|XP_012142611.1| ; Align 1702978 260 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793961|ref|XP_012142611.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 218 Query range: 139 -> 265 Target range: 1702007 -> 1702385 140 : IleThrGlnValLeuAlaLeuCysProValGlyPheSerTyrPheSerLeuAspAs : 158 .!!.!!|||||||||:!!|||! !! !|||||| ! !!!|||.!!!!!!!!||||| PheAlaGlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAs 1702008 : TTTGCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAA : 1702062 159 : nValLeuCysIleIleAsnLeuHisIleAlaGlyGlnPheArgIleLeuGlnTyrA : 177 |:!!||||||:!:!!:||||||||| ||| !|||||||||||||||||||||| nLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrA 1702063 : CCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACA : 1702119 178 : rgLeuSer<-><-><->AspLysTyrSerGlyGlnValGlnAsnGlyLeuAspGln : 192 |||||||| |||! ! !!!!! !||||||.!.:!!..! !..!... rgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSer 1702120 : GGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGC : 1702173 193 : LysSerAspLeuTyrLeuLysAspAsnAlaProAspValPheLysSerTyrIleAr : 211 !:!! ! ! !!!! !!!:|||..! ! ! !.!||||||!:!! !:!!|| AlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValAr 1702174 : GCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACG : 1702230 212 : gGlnHisGlnAlaLeuIleThrTyrCysAsnGluLeuGlnGluValPheGlyIleI : 230 |||||||||| !! !||||||||||||:!!..!|||.!.|||:!!||| !:!!| gGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValI 1702231 : ACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCA : 1702287 231 : leValLeuAlaLeuTyrSerGlnValMetThrPheSerMetLeuIleCysLeuAsp : 248 |||||||| .!!!!.:!!:!:..!||||||:!:||||||||||||! ! leValLeu---------GlyHisIleLeuValPheSerLeuLeuIleCysLeuVal 1702288 : TTGTACTC---------GGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTT : 1702332 249 : GlyPheGlnValLeuLeuLeuAspLeuIleGlnArgLysValIlePhePhe : 265 |||||||||||||||:!!:!! !!!!:!!:!!! ! :::||| ||| GlyPheGlnValLeuValValArgPheValGluProLeuIleIleLysPhe 1702333 : GGATTCCAAGTGCTCGTGGTACGTTTCGTTGAACCTttgattattaaattt : 1702385 vulgar: gi|805793961|ref|XP_012142611.1| 139 265 . KQ414915.1 1702007 1702385 + 218 M 40 120 G 0 9 M 53 159 G 3 0 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702008 1702385 218 + . gene_id 6 ; sequence gi|805793961|ref|XP_012142611.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702008 1702385 . + . KQ414915.1 exonerate:protein2genome:local exon 1702008 1702385 . + . insertions 9 ; deletions 3 KQ414915.1 exonerate:protein2genome:local similarity 1702008 1702385 218 + . alignment_id 6 ; Query gi|805793961|ref|XP_012142611.1| ; Align 1702008 140 120 ; Align 1702137 180 159 ; Align 1702296 236 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793961|ref|XP_012142611.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 209 Query range: 107 -> 178 Target range: 1711234 -> 1711993 108 : ValAsnLeuPheMetAsnGluSerGluArgValLeuProPheLysMetTyrLeuAs : 126 ||||||:!! ! |||||||||!!:|||:!!|||||||||||||||!:::!!:! ValAsnIleGlyArgAsnGluSerAspArgIleLeuProPheLysMetTrpIleAs 1711235 : GTGAATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTGGATTGA : 1711289 127 : nValProIleGlnAlaThrProTyrPheGluIleAlaTyrIleThrGln >>>> : 143 !:!!|||! !..! !|||||||||||||||||| ::: !||| pIleProThrSerMetThrProTyrPheGluIlePhePheThrLeuGln++ 1711290 : TATACCGACATCGATGACACcgtattttgaaatattcttcaccTTACAGgt..... : 1711342 144 : Target Intron 1 >>>> ValLeuAlaLeuCysProValGlyPheSerTyrP : 154 546 bp ||||||:!! !! !! !:!!||| ! |||||| ++ValLeuSerAlaTyrGlnIleGlyValSerTyrG 1711343 : ....................agGTTTTATCCGCGTATCAAATTGGCGTGAGTTACG : 1711919 155 : heSerLeuAspAsnValLeuCysIleIleAsnLeuHisIleAlaGlyGlnPheArg : 172 !!!!!!!||||||||||||||||||!!:|||||||||:!:||| !||||||||| lyCysPheAspAsnValLeuCysIleMetAsnLeuHisLeuAlaThrGlnPheArg 1711920 : GTTGCTTCGACAACGTTCTATGCATCATGAACCTACACTTGGCCACTCAGTTTCGA : 1711973 173 : IleLeuGlnTyrArgLeu : 178 |||||||||:!!|||||| IleLeuGlnHisArgLeu 1711974 : ATACTGCAACATAGACTG : 1711993 vulgar: gi|805793961|ref|XP_012142611.1| 107 178 . KQ414915.1 1711234 1711993 + 209 M 35 105 5 0 2 I 0 542 3 0 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711235 1711993 209 + . gene_id 7 ; sequence gi|805793961|ref|XP_012142611.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1711235 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711235 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1711993 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1711993 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711235 1711993 209 + . alignment_id 7 ; Query gi|805793961|ref|XP_012142611.1| ; Align 1711235 108 105 ; Align 1711886 143 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793961|ref|XP_012142611.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 108 -> 178 Target range: 1681725 -> 1682058 109 : AsnLeuPheMetAsnGluSerGluArgValLeuProPheLysMet<->TyrLeuAs : 126 |||:!! ! !:!!!:..!||||||:!!||||||||| !.!. !!!|| AsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAs 1681726 : AACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAA : 1681780 127 : nValProIleGlnAlaThrProTyrPheGluIleAlaTyrIleThrGln >>>> : 143 |:!!|||! ... !|||||||||:::|||||| ::::!:! !:!! nLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681781 : CTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt..... : 1681833 144 : Target Intron 1 >>>> ValLeuAlaLeuCysProValGlyPheSerTyrP : 154 120 bp ..!|||:!!:!! ! ! !|||.!!!!!!:!! ++ThrLeuSerValValHisSerGlyIleCysPheC 1681834 : ....................agACATTATCTGTGGTGCATTCGGGAATTTGTTTCT : 1681984 155 : heSerLeuAspAsnValLeuCysIleIleAsnLeuHisIleAlaGlyGlnPheArg : 172 !!!!!!!|||||| !!|||||||||:!:!:!:!!|||:!!!.!|||||||||!:! ysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLys 1681985 : GTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAG : 1682038 173 : IleLeuGlnTyrArgLeu : 178 ||||||||| !!!:!||| IleLeuGlnAsnLysLeu 1682039 : ATTTTACAAAACAAACTC : 1682058 vulgar: gi|805793961|ref|XP_012142611.1| 108 178 . KQ414915.1 1681725 1682058 + 148 M 15 45 G 0 3 M 19 57 5 0 2 I 0 116 3 0 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681726 1682058 148 + . gene_id 8 ; sequence gi|805793961|ref|XP_012142611.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681726 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681726 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682058 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682058 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681726 1682058 148 + . alignment_id 8 ; Query gi|805793961|ref|XP_012142611.1| ; Align 1681726 109 45 ; Align 1681774 124 57 ; Align 1681951 143 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793961|ref|XP_012142611.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 256 -> 364 Target range: 1682547 -> 1683069 257 : LeuIleGlnArgLysValIlePhePhePheHisLeuLeuThrThrValCysGlnLe : 275 :!!:!:..!!:!::!:!!:!:|||.!. !:!!!!!||| ! !||| |||:: ValLeuMetLysArgLeuLeuPheLeuAsnTyrPheLeuGlyGlyValIleGlnIl 1682548 : GTATTGATGAAACGATTGTTGTTCCTAAATTACTTTCTCGGTGGAGTGATacagat : 1682602 276 : uIleMetPheSerTyrSerCysAspCysIleIleArgGluSerValAsnLeuAlaT : 294 :...:::...::: !:!|||:!! !|||!!:..!:!!|||! ! !:!!!.!| ePheLeuIleThrLeuAsnCysAsnAspIleMetGluGlnSerGlyAlaIleGlyT 1682603 : atttttaataacccTAAATTGCAACGACATAATGGAGCAAAGTGGCGCTATAGGAA : 1682659 295 : hrAlaAlaPheSerGlyProTrpLeuLeuLeuProSerSerLysGlyIleAspAsn : 312 ||||| !!:!||| !! !||| ! ! ::: ... .!. hrAlaIleTyrSerCysAsnTrpGluArgAsnValTyrAsnHis---PheTyrGln 1682660 : CAGCGATCTACAGTTGTAATTGGGAGAGGAAtgtttataatcat---ttttaccAG : 1682710 313 : LeuLysLysAspPheIleMetLeuIleMetArgSerAsnLysProCysTyrIleSe : 331 !!!!:!||||||.!.!!:!!::!!!!::!:|||:!!!!.:::|||||||||||||| PheArgLysAspMetMetIleValMetValArgAlaLysArgProCysTyrIleSe 1682711 : TTCAGAAAGGATATGATGATTGTAATGGTACGAGCGAAACGTCCTTGCTACATTTC : 1682767 332 : rGlyLeuGlyPhePheIleValSerLeuGluThrSerThrArg >>>> Target : 346 |!.! ! !|||||| !:!!|||||||||:!!! !|||!:: 2 rAlaAlaLysPhePheProIleSerLeuGluSerPheThrLys++ 1682768 : AGCAGCGAAATTCTTTCCAATCTCCCTTGAATCGTTCACGAaggt........... : 1682814 347 : Intron 1 >>>> ValIleThrThrAlaGlySerTyrPheThrLeuLeuGlnG : 359 01 bp |||:!!!:!.!!.!!!.!||||||!:!|||||||||!:: ++ValLeuSerAlaThrAlaSerTyrTyrThrLeuLeuArgT 1682815 : ..............agGTGTTAAGTGCAACAGCATCTTATTATACACTGCTGCGTA : 1683052 360 : lnThrGlnSerAsnIle : 364 !! !:!!! !:!!:!! hrMetGluMetAspVal 1683053 : CAATGGAAATGGACGTC : 1683069 vulgar: gi|805793961|ref|XP_012142611.1| 256 364 . KQ414915.1 1682547 1683069 + 143 M 52 156 G 1 0 M 36 108 5 0 2 I 0 197 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682548 1683069 143 + . gene_id 9 ; sequence gi|805793961|ref|XP_012142611.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1682548 1682811 . + . KQ414915.1 exonerate:protein2genome:local exon 1682548 1682811 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1682812 1682813 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1682812 1683012 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1683011 1683012 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1683013 1683069 . + . KQ414915.1 exonerate:protein2genome:local exon 1683013 1683069 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1682548 1683069 143 + . alignment_id 9 ; Query gi|805793961|ref|XP_012142611.1| ; Align 1682548 257 156 ; Align 1682704 310 108 ; Align 1683013 346 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793979|ref|XP_012142615.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 678 Query range: 243 -> 488 Target range: 1688053 -> 1690076 244 : SerAsnIleGlyLysAsnLysSerGluArgIleLeuProLeuAspValTrpPheAs : 262 :!!|||!!:.!!::!|||||||||!!:|||:!!||||||!!! ! :!!||| !!:! AlaAsnMetSerArgAsnLysSerAspArgValLeuProPheLysMetTrpValAs 1688054 : GCAAATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTGGGTCGA : 1688108 263 : nPheProSerThrGluThrProTyrTyrGluPheMetPheThrPheGln >>>> : 279 !!::||| !:!!!!:|||||||||||||||!!.||||||||||||||| pTrpProLeuSerAspThrProTyrTyrGluLeuMetPheThrPheGln++ 1688109 : TTGGCCGCTATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAGgt..... : 1688161 280 : Target Intron 1 >>>> IleIleSerValPheLeuValGlyThrAlaTyrV : 290 179 bp :!:!!!|||!:!! !:!!|||.!!||||||: ++AlaLeuCysValTyrGlnIleGlyAlaAlaTyrI 1688162 : ....................agGCGCTGTGCGTGTATCAAATCGGCGCCGCCTATA : 1688371 291 : alSerProAspThrLeuLeuCysIleLeuAsnLeuHisValIleTyrGlnPheArg : 308 !!!!! !!||||||!!!!!!|||!!:||||||:!!|||||||||! !||||||||| leCysSerAspThrPhePheCysMetLeuAsnMetHisValIleCysGlnPheArg 1688372 : TCTGCTCCGACACGTTTTTCTGCATGCTGAACATGCACGTGATCTGCCAGTTCCGT : 1688425 309 : MetLeuHisTyrArgMetLeuArgLeuTrpLysArgAsnAsnGlyAsnThrAspAl : 327 !!:|||:!!||||||:!!|||!.!:!!||| ! !! !:!!! !...|||:!! IleLeuAsnTyrArgLeuLeuAsnMetTrpProValIleAspGluArgThrAsnMe 1688426 : ATACTAAATTACAGACTGTTGAACATGTGGCCGGTCATCGACGAGCGAACGAACAT : 1688482 328 : aThrLysTyrAlaIleGlnCysSerGluAspLeuArgLysCysValAsnGluTyrG : 346 !|||:!!|||.!!! !:!!|||! ! ! |||! ! ! |||:!!!!..!.:!!| tThrGluTyrThrAsnLysCysTyrThrLysLeuIleAspCysIleLysAsnHisG 1688483 : GACCGAATACACGAACAAATGTTACACCAAGCTGATAGATTGCATCAAAAATCATC : 1688539 347 : lnSerLeuIleGluPheCysGluAsnMetGluHisValPheSerArgThrLeuLeu : 364 ||||||||||||||||||||! !!!.:!:|||:!!|||!:!!!! !|||:!!||| lnSerLeuIleGluPheCysValLysLeuGluAsnValTyrThrLeuThrIleLeu 1688540 : AGTCGTTGATCGAGTTCTGCGTGAAACTCGAGAACGTGTACACGTTGACTATACTC : 1688593 365 : IleHisValAlaIlePheSerValLeuMetGlyPheAspGlyTyrGluIleLeuLe : 383 !|||:!!!.!:!!||||||:!!|||||| !!|||||| !||||||:!!:!!|| GlyHisIleValValPheSerLeuLeuMetCysPheAspThrTyrGluValValLe 1688594 : GGCCACATAGTGGTCTTCAGCTTGTTGATGTGCTTCGACACGTACGAGGTAGTTCT : 1688650 384 : u >>>> Target Intron 2 >>>> SerAsnAlaProLeuAlaArgArgCy : 392 | 816 bp :!!!!.!.!||| !.!!! !||| u++ ++AlaLysValProThrThrThrArgLe 1688651 : Ggt.........................agGCAAAGGTACCTACCACGACGCGCCT : 1689493 393 : sThrPheIlePheHisValAlaGlySerPheIleHisLeuGlyIlePheThrPheC : 411 !! !|||:!!||||||:!! !|||||||||||||||::: ...||||||::! uIlePheLeuPheHisMetIleGlySerPheIleHisIleIlePhePheThrTyrS 1689494 : CATATTCTTATTCCACATGATCGGTAGCTTCATCCacataattttcttcacgtACA : 1689550 412 : ysCysSerGlyLeuThrGluGluSerSerLysIleSerThrIleIleTyrPheGly : 429 !!|||.!!||||||! !|||||||||! ! ! |||:!!||| !! ||| ||| erCysGlyGlyLeuIleGluGluSerMetAspIleAlaThrAlaThrTyrAlaGly 1689551 : GTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCAACAGCAACGTATGCAGGA : 1689604 430 : SerTrpSerThrLeuProMetAspGlnIleGlyLysSerIleArgSerLysIleIl : 448 ! !|||!!!..!|||||||||:!!:!!:!!||||||! !||||||.!!!!.!!:! MetTrpThrValLeuProMetAsnLysValGlyLysMetIleArgGlyAsnMetLy 1689605 : ATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAATGATACGAGGAAATATGAA : 1689661 449 : eIleValMetMetArgThrMetArgProCysCysLeuThrAlaGlyGlyPhePheP : 467 :!!:!!! :!:|||:!!:!!!:!|||||||||:!!||||||||||||||||||| sLeuMetThrValArgSerLeuGlnProCysCysIleThrAlaGlyGlyPhePheP 1689662 : GTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAACTGCTGGTGGATTCTTTC : 1689718 468 : roValSerLeuLysThrPheThrThr >>>> Target Intron 3 >>>> L : 476 ||||||||||||||||| !|||.!! 293 bp | roValSerLeuLysThrAlaThrAla++ ++L 1689719 : CTGTCTCCTTGAAAACTGCTACCGCGgt.........................agC : 1690038 477 : euLeuSerSerThrPheSerTyrPheThrLeuMetArg : 488 ||:!!|||||||||.!.||||||||||||||||||||| euMetSerSerThrMetSerTyrPheThrLeuMetArg 1690039 : TAATGAGTTCCACAATGTCGTATTTCACGCTCATGAGA : 1690076 vulgar: gi|805793979|ref|XP_012142615.1| 243 488 . KQ414915.1 1688053 1690076 + 678 M 35 105 5 0 2 I 0 175 3 0 2 M 105 315 5 0 2 I 0 812 3 0 2 M 92 276 5 0 2 I 0 289 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688054 1690076 678 + . gene_id 1 ; sequence gi|805793979|ref|XP_012142615.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688054 1688158 . + . KQ414915.1 exonerate:protein2genome:local exon 1688054 1688158 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688159 1688160 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688159 1688337 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1688336 1688337 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1688338 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688338 1688652 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690076 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690076 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688054 1690076 678 + . alignment_id 1 ; Query gi|805793979|ref|XP_012142615.1| ; Align 1688054 244 105 ; Align 1688338 279 315 ; Align 1689469 384 276 ; Align 1690038 476 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793979|ref|XP_012142615.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 374 Query range: 157 -> 332 Target range: 1693994 -> 1695028 158 : PheGlnTyrSerValTyrAlaSerCysAsnValLeuCysThrIleMetAlaAlaSe : 176 |||||| !!!!!:!!|||!.!.!!||||||:!!|||! ! ! !!:!.! !! PheGlnAspCysIleTyrValGlyCysAsnIleLeuTyrLeuAlaIleValPhePh 1693995 : TTCCAGGACTGCATTTACGTCGGGTGCAACATTTTATACCTAGCGATCGTTTTCTT : 1694049 177 : rLysIleLeuValLeuArgIleArgArgLeuGluLeuGluAsnIleLeuAlaAspA : 195 !||||||||||||||| !! !.!|||:!!|||!!! ! ...:!!:!! ! !. eLysIleLeuValLeuTyrLysHisArgIleGluPheTyrGlyLeuIleArgPheT 1694050 : CAAGATCCTCGTTTTGTACAAGCACAGAATAGAATTCTACGGGTTAATCAGGTTCA : 1694106 196 : laGluArgHisPheTrpHisTrpAsnTyrAsnSerGluGluGlnLeuLeuPheSer : 213 !!:!!..! ! |||||||||!:::!!|||||||||..!|||:!!|||:!!!!.||| hrGlnGluLysPheTrpHisPheAspTyrAsnSerArgGluLysLeuIleLeuSer 1694107 : CGCAAGAGAAATTCTGGCATTTCGACTATAATTCACGGGAGAAGTTAATTTTATCC : 1694160 214 : GluCysArgLeuIleCysLysTyrPheIleMetPheValLeuSerIleProProAl : 232 ||||||!:! !||||||! !||||||:!: ! !! !! ! ! !!! !!. GluCysLysLysIleCysThrValPheIleValAlaPheSerPheCysThrGlnGl 1694161 : GAGTGCAAGAAGATATGTACCGTTTTCATCGTTGCCTTCAGCTTCTGTACTCAGGG : 1694217 233 : aSerLeuPheGlyTyrValIleThrProIleVal{S} >>>> Target Intro : 244 !!!!! ! !|||||||||:!:|||||||||:!!{:} 100 bp yThrCysAlaGlyTyrValValThrProIleLeu{A}++ 1694218 : CACGTGTGCTGGTTACGTAGTGACACCTATTTTA{g}gt................. : 1694256 245 : n 1 >>>> {er}AsnIleGlyLysAsnLysSerGluArgIleLeuProLeuAsp : 258 {!!}|||:!!|||||||||:!!|||||||||!!:||||||!!!:!! ++{la}AsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsn 1694257 : ........ag{CA}AATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAAC : 1694395 259 : ValTrpPheAsnPheProSerThrGluThrProTyrTyrGluPheMetPheThrPh : 277 :!!||| !!:!!||||||!!! ! !:!!|||||||||||| !!:!:|||! !.! MetTrpValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIl 1694396 : ATGTGGGTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCAT : 1694452 278 : eGln >>>> Target Intron 2 >>>> IleIleSerValPheLeuValGl : 286 .||| 409 bp ! !:!!!!!|||!:!! !||||| eGln++ ++ThrLeuCysValTyrHisValGl 1694453 : ACAGgt.........................agACACTTTGCGTGTACCATGTCGG : 1694888 287 : yThrAlaTyrValSerProAspThrLeuLeuCysIleLeuAsnLeuHisValIleT : 305 |! !..!|||:!!!!! !|||!.!:!!||| !!:!!||||||||||||||| ! yIleCysTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaT 1694889 : TATATGTTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCA : 1694945 306 : yrGlnPheArgMetLeuHisTyrArgMetLeuArgLeuTrpLysArgAsnAsnGly : 323 !|||||||||!!:|||!!.||||||.!.:!!!.!||| ! !!. !! !.!. ! hrGlnPheArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLys 1694946 : CTCAATTTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAG : 1694999 324 : AsnThrAspAlaThrLysTyrAlaIle : 332 .!.||||||!.! ::: ||| GlnThrAspGlyArgGluLeuGluIle 1695000 : CAAACAGACGGTcgagaattggaaatt : 1695028 vulgar: gi|805793979|ref|XP_012142615.1| 157 332 . KQ414915.1 1693994 1695028 + 374 M 86 258 S 0 1 5 0 2 I 0 96 3 0 2 S 1 2 M 34 102 5 0 2 I 0 405 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1693995 1695028 374 + . gene_id 2 ; sequence gi|805793979|ref|XP_012142615.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1693995 1694253 . + . KQ414915.1 exonerate:protein2genome:local exon 1693995 1694253 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694254 1694255 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1694254 1694353 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694352 1694353 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694354 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694354 1694457 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695028 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695028 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1693995 1695028 374 + . alignment_id 2 ; Query gi|805793979|ref|XP_012142615.1| ; Align 1693995 158 258 ; Align 1694356 245 102 ; Align 1694867 279 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793979|ref|XP_012142615.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 358 Query range: 277 -> 490 Target range: 1702013 -> 1703653 278 : GlnIleIleSerValPheLeuValGlyThrAlaTyrValSerProAspThrLeuLe : 296 |||:!!:!:|||:!!!:!! !||||||..!..!|||:!!!!! !|||!.!||||| GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 297 : uCysIleLeuAsnLeuHisValIleTyrGlnPheArgMetLeuHisTyrArgMetL : 315 ||||:!::!!|||||||||!.! ! !|||||||||!!:|||!!.||||||:!:! uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 316 : euArgLeuTrpLysArgAsnAsnGlyAsnThrAspAlaThrLysTyrAlaIleGln : 333 !!.!||| ! ! ! !|||!.. !.!...!|||! !!.!:!!! !::! ! erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1702179 334 : CysSerGluAspLeuArgLysCysValAsnGluTyrGlnSerLeuIleGluPheCy : 352 |||... ! !..!!!.||| !!!.! !!:!:!!!:!! !:!!..! LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHi 1702180 : CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACA : 1702236 353 : sGluAsn<->MetGluHisValPheSerArgThrLeuLeuIleHisValAlaIleP : 370 !:!!||| !!: !:!! ! !!!! !!.! !:!!.!! ||| !:!!. sGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValL 1702237 : TCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTAC : 1702293 371 : heSerValLeuMetGlyPheAspGlyTyrGluIleLeuLeuSerAsnAlaProLeu : 388 !!.!! !:!!:!:! !|||..! ! ! !|||:!!.!! ! ! !||| euGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeu 1702294 : TCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTC : 1702347 389 : Ala >>>> Target Intron 1 >>>> ArgArgCysThrPheIlePheHis : 397 !.! 625 bp |||||| !||||||:!!|||||| Val++ -+ArgArgLeuThrPheValPheHis 1702348 : GTGgt.........................cgAGGCGGCTTACTTTCGTATTTCAC : 1702999 398 : ValAlaGlySerPheIleHisLeuGlyIlePheThrPheCysCysSerGlyLeuTh : 416 :!!!.!||||||.!. !!!.||| !:!!||||||!:! !!|||..!||||||! IleValGlySerLeuCysGlnLeuLeuLeuPheThrTyrSerCysAspGlyLeuIl 1703000 : ATAGTCGGTAGTCTATGCCAACTATTGCTATTTACCTATAGCTGCGACGGTCTGAT : 1703056 417 : rGluGluSerSerLysIleSerThrIleIleTyrPheGlySerTrpSerThrLeuP : 435 !|||||||||!!!!!.|||.!!||| ||||||.!!||| !!|||! ! !|||| eGluGluSerThrAsnIleGlyThrAlaIleTyrLeuGlyProTrpIleHisLeuP 1703057 : AGAGGAAAGTACGAACATCGGGACTGCGATATACCTCGGGCCTTGGATACATCTGC : 1703113 436 : roMetAspGlnIleGlyLysSerIleArgSerLysIleIleIleValMetMetArg : 453 ||||||||:!! !|||!:!!!!:!:|||!!! ! :!:! !!!:|||!!::!:||| roMetAspLysAlaGlyArgArgLeuArgArgAspLeuThrMetValIleValArg 1703114 : CAATGGACAAAGCCGGCAGAAGGTTGAGAAGAGACTTGACAATGGTCATCGTAAGA : 1703167 454 : ThrMetArgProCysCysLeuThrAlaGlyGlyPhePheProValSerLeuLysTh : 472 :!!! !:! !! !!||||||||||||.!!|||||||||||||||||||||:!!|| SerArgLysSerSerCysLeuThrAlaSerGlyPhePheProValSerLeuGluTh 1703168 : TCGAGAAAATCGAGCTGTTTAACTGCCAGCGGATTCTTTCCTGTTTCGCTGGAAAC : 1703224 473 : rPheThrThr >>>> Target Intron 2 >>>> LeuLeuSerSerThrPh : 481 |! !|||||| 373 bp :!!||||||!!!.!!.! rCysThrThr++ ++ValLeuSerThrAlaMe 1703225 : TTGTACCACGgt.........................agGTGCTCAGTACAGCGAT : 1703624 482 : eSerTyrPheThrLeuMetArgAsnSer : 490 .|||||||||||||||:!:|||:!!||| tSerTyrPheThrLeuLeuArgHisSer 1703625 : GTCATACTTCACTTTATTAAGGCACTCT : 1703653 vulgar: gi|805793979|ref|XP_012142615.1| 277 490 . KQ414915.1 1702013 1703653 + 358 M 77 231 G 0 3 M 35 105 5 0 2 I 0 621 3 0 2 M 86 258 5 0 2 I 0 369 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1703653 358 + . gene_id 3 ; sequence gi|805793979|ref|XP_012142615.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702014 1702352 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702352 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1702353 1702354 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1702353 1702977 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702976 1702977 . + . intron_id 0 ; splice_site "CG" KQ414915.1 exonerate:protein2genome:local cds 1702978 1703235 . + . KQ414915.1 exonerate:protein2genome:local exon 1702978 1703235 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1703236 1703237 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1703236 1703608 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1703607 1703608 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1703609 1703653 . + . KQ414915.1 exonerate:protein2genome:local exon 1703609 1703653 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1703653 358 + . alignment_id 3 ; Query gi|805793979|ref|XP_012142615.1| ; Align 1702014 278 231 ; Align 1702248 355 105 ; Align 1702978 390 258 ; Align 1703609 476 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793979|ref|XP_012142615.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 325 Query range: 41 -> 161 Target range: 1687380 -> 1688164 42 : CysValPheGlyMetSerAsnLeuLeuIleIleThrMetAlaIleSerLysValIl : 60 |||:!!||| !! !!!||| !||| !||| !:!!||||||! !|||:!!.! CysIlePheLeuThrCysAsnThrLeuCysIleLeuLeuAlaIlePheLysIlePh 1687381 : TGCATCTTTCTGACTTGCAACACACTGTGCATTCTTCTGGCGATATTTAAGATTTT : 1687435 61 : eValLeuArgIleArgArgLeuGluLeuAlaAspValValValTyrAlaGluArgH : 79 !:!!|||!!!! !!.!||| !|||!!! !!!::!!|||:!!||||||:!!!:!| eIleLeuSerAsnHisArgThrGluPheLysGluIleValLeuTyrAlaGlnLysH 1687436 : CATACTAAGCAATCACAGAACGGAATTCAAGGAGATAGTCTTGTACGCGCAGAAGC : 1687492 80 : isPheTrpHisTyrAsnTyrSerPheGluGluGlnLeuIlePheAlaLysCysGln : 97 ||||||||||| !!||||||||| ||||||::!:!!:!!!:!!.! ! |||||| isPheTrpHisAspAsnTyrSerLysGluGluArgValLeuTyrGlyAspCysGln 1687493 : ATTTTTGGCATGATAATTACAGCAAAGAGGAGAGGGTGCTTTATGGAGATTGCCAG : 1687546 98 : ArgPheCysLysLeuTrpIleIlePheValPheCysIleLeuProAlaSerIleSe : 116 ||||||||||||||||||:!!|||.!.:!!! !! !:!! !! !||||||:!! ArgPheCysLysLeuTrpValIleLeuIleCysPheLeuThrGlnAlaSerLeuVa 1687547 : AGGTTCTGCAAACTATGGGTCATACTAATATGTTTCCTTACGCAAGCCTCTTTAGT : 1687603 117 : rGlyTyrValThrThrProIleVal{T} >>>> Target Intron 1 >>>> : 125 ! !||| !!..!||||||:!!..!{ } 424 bp lPheTyrPheValThrProLeuThr{A}++ + 1687604 : GTTCTACTTTGTCACACCACTCACT{G}gt.........................a : 1688053 126 : {yr}AsnIleGlyArgAsnLysSerAspArgGluPheProLeuGluIleArgSer : 142 { }|||!!:.!!||||||||||||||||||! !.!!|||!!!:!!!!: !! ! +{la}AsnMetSerArgAsnLysSerAspArgValLeuProPheLysMetTrpVal 1688054 : g{CA}AATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTGGGTC : 1688105 143 : AspLeuProLeuThrGluThrProTyrPheGluLeuIlePheThrPheGlnTyrSe : 161 |||! !||||||:!!!!:|||||||||!:!||||||!!:|||||||||||| || AspTrpProLeuSerAspThrProTyrTyrGluLeuMetPheThrPheGlnValSe 1688106 : GATTGGCCGCTATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAGGTATC : 1688162 162 : r : 161 | r 1688163 : G : 1688164 vulgar: gi|805793979|ref|XP_012142615.1| 41 161 . KQ414915.1 1687380 1688164 + 325 M 83 249 S 0 1 5 0 2 I 0 420 3 0 2 S 1 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1687381 1688164 325 + . gene_id 4 ; sequence gi|805793979|ref|XP_012142615.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1687381 1687630 . + . KQ414915.1 exonerate:protein2genome:local exon 1687381 1687630 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1687631 1687632 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1687631 1688054 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1688053 1688054 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1688055 1688164 . + . KQ414915.1 exonerate:protein2genome:local exon 1688055 1688164 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1687381 1688164 325 + . alignment_id 4 ; Query gi|805793979|ref|XP_012142615.1| ; Align 1687381 42 249 ; Align 1688057 126 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793979|ref|XP_012142615.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 320 Query range: 154 -> 317 Target range: 1710848 -> 1712002 155 : IlePheThrPheGlnTyrSerValTyrAlaSerCysAsnValLeuCysThrIleMe : 173 |||.!!! !! ||| !!!!!:!!!:!! !! !|||!.!:!!|||! ..!||||| IleLeuIleSerGlnAspThrLeuPheAspIleCysThrLeuLeuSerValIleMe 1710849 : ATTCTCATTTCACAGGACACACTGTTCGACATATGCACTCTTCTGTCGGTGATAAT : 1710903 174 : tAlaAlaSerLysIleLeuValLeuArgIleArgArgLeuGluLeuGluAsnIleL : 192 | !!|||! !||||||:!!:!!||| !|||!.!!:! !|||!!! ..!:!:: tProAlaIleLysIleIleIleLeuPheIleAsnLysGluGluPhePheArgLeuI 1710904 : GCCCGCTATCAAAATAATCATCCTGTTTATCAACAAGGAGGAGTTTTTCCGTTTGA : 1710960 193 : euAlaAspAlaGluArgHisPheTrpHisTrpAsnTyrAsnSerGluGluGlnLeu : 210 !!!.! !!.!!||||||!!.||| !:!! !!:!!||||||..!!!:|||::! ! leValTyrThrGluArgGlnPheMetAsnGlyAspTyrAsnGluAspGluArgLys 1710961 : TCGTGTACACAGAGCGACAATTCATGAACGGGGATTACAACGAGGACGAGAGGAAG : 1711014 211 : LeuPheSerGluCysArgLeuIleCysLysTyrPheIleMetPheValLeuSerIl : 229 :!! ! ! !!!:|||!:!! !:!:|||! !!:!|||! ! |||:!!! !|||:! IleValPheAspCysLysArgLeuCysThrPhePheThrCysPheLeuSerSerVa 1711015 : ATTGTGTTCGATTGTAAACGCCTGTGTACATTCTTCACTTGTTTCCTCTCATCTGT : 1711071 230 : eProProAlaSerLeuPheGlyTyrValIleThrProIleVal{S} >>>> Tar : 244 : !! !:!!!!!:!!.!!..!||||||:!!||||||||| !{!} lThrLeuSerCysValLeuSerTyrValValThrProIleTyr{M}++ 1711072 : GACTTTATCGTGCGTTCTCTCTTACGTCGTCACTCCAATTTAC{A}gt........ : 1711119 245 : get Intron 1 >>>> {er}AsnIleGlyLysAsnLysSerGluArgIleLeu : 255 119 bp { !}|||||||||!:!|||:!!|||!!:||||||||| ++{et}AsnIleGlyArgAsnGluSerAspArgIleLeu 1711120 : .................ag{TG}AATATTGGAAGAAACGAATCCGACAGAATACTG : 1711268 256 : ProLeuAspValTrpPheAsnPheProSerThrGluThrProTyrTyrGluPheMe : 274 |||!!! ! :!!|||.!!:!!.!.|||!!!:!! !|||||||||:::|||..... ProPheLysMetTrpIleAspIleProThrSerMetThrProTyrPheGluIlePh 1711269 : CCGTTTAAAATGTGGATTGATATACCGACATCGATGACACcgtattttgaaatatt : 1711325 275 : tPheThrPheGln >>>> Target Intron 2 >>>> IleIleSerValPh : 283 .||||||!!.||| 546 bp :!!:!!|||!.!!: ePheThrLeuGln++ ++ValLeuSerAlaTy 1711326 : cttcaccTTACAGgt.........................agGTTTTATCCGCGTA : 1711898 284 : eLeuValGlyThrAlaTyrValSerProAspThrLeuLeuCysIleLeuAsnLeuH : 302 !! !:!!|||..!::!|||! !!!! !|||!.!:!!|||||||||:!!||||||| rGlnIleGlyValSerTyrGlyCysPheAspAsnValLeuCysIleMetAsnLeuH 1711899 : TCAAATTGGCGTGAGTTACGGTTGCTTCGACAACGTTCTATGCATCATGAACCTAC : 1711955 303 : isValIleTyrGlnPheArgMetLeuHisTyrArgMetLeuArgLeu : 317 ||:!! ! !|||||||||!!:|||!!.:!!|||:!!:!!!.!:!! isLeuAlaThrGlnPheArgIleLeuGlnHisArgLeuValAsnIle 1711956 : ACTTGGCCACTCAGTTTCGAATACTGCAACATAGACTGGTGAATATA : 1712002 vulgar: gi|805793979|ref|XP_012142615.1| 154 317 . KQ414915.1 1710848 1712002 + 320 M 89 267 S 0 1 5 0 2 I 0 115 3 0 2 S 1 2 M 34 102 5 0 2 I 0 542 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1710849 1712002 320 + . gene_id 5 ; sequence gi|805793979|ref|XP_012142615.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1710849 1711116 . + . KQ414915.1 exonerate:protein2genome:local exon 1710849 1711116 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711117 1711118 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711117 1711235 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711234 1711235 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711236 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711236 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712002 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712002 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1710849 1712002 320 + . alignment_id 5 ; Query gi|805793979|ref|XP_012142615.1| ; Align 1710849 155 267 ; Align 1711238 245 102 ; Align 1711886 279 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793979|ref|XP_012142615.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 246 Query range: 384 -> 496 Target range: 1712372 -> 1713342 385 : AsnAlaProLeuAlaArgArgCysThrPheIlePheHisValAlaGlySerPheIl : 403 ..!||| !!:!!!.!!:!!:! ||| ||||||::!||||||!!!.!. GlyAlaSerValGlyLysGlnMetIlePheThrPheHisLeuAlaGlyCysMetCy 1712373 : GGTGCATCTGTGGGTAAACAGAtgattttcacgtttcacctAGCGGGATGTATGTG : 1712427 404 : eHisLeuGlyIlePheThrPheCysCysSerGlyLeuThrGluGluSerSerLysI : 422 !!!.||| !!!:||||||!:! !!|||..! !!:!!! ! !||||||! !!!.: sGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleThrGluSerLeuAsnV 1712428 : TCAATTGCTGATGTTTACGTACAGCTGCGATTGTATAATAACGGAAAGTTTGAACG : 1712484 423 : leSerThrIleIleTyrPheGlySerTrpSerThrLeuProMetAspGlnIleGly : 440 !:!!! ! :!:||| !||| !!||| !! !|||||||||..! !! !||| alThrGluAlaValTyrAspGlyProTrpProArgLeuProMetSerThrArgGly 1712485 : TGACGGAAGCGGTGTACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGA : 1712538 441 : LysSerIleArgSerLysIleIleIleValMetMetArgThrMetArgProCysCy : 459 !:!! !||||||!.! ! :!:|||:!!|||!!:!!:|||:!!! !|||||||| ArgMetIleArgLysAspLeuIleLeuValIleIleArgSerArgValProCysCy 1712539 : AGAATGATAAGGAAGGATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTG : 1712595 460 : sLeuThrAlaGlyGlyPhePheProValSerLeuLysThrPheThrThr >>>> : 476 |||||||||| !!||||||||| !:!!||||||:!!|||!:!|||! ! sLeuThrAlaArgGlyPhePheValIleSerLeuGluThrTyrThrLys++ 1712596 : CTTGACCGCCAGAGGATTCTTCGTAATATCTTTGGAAACGTATACGAAGgt..... : 1712648 477 : Target Intron 1 >>>> LeuLeuSerSerThrPheSerTyrPheThrLeuM : 487 634 bp :!!:!!|||!!!.!! ! |||||||||||||||: ++ValIleSerThrAlaValSerTyrPheThrLeuL 1712649 : ....................agGTTATAAGTACAGCAGTGTCGTACTTCACACTGT : 1713313 488 : etArgAsnSerIleSerGlySerGluSer : 496 !:|||.!. !!|||..!! !|||.!.||| euArgGlnArgIleGluGluSerAsnSer 1713314 : TAAGGCAACGTATAGAGGAAAGCAATAGT : 1713342 vulgar: gi|805793979|ref|XP_012142615.1| 384 496 . KQ414915.1 1712372 1713342 + 246 M 91 273 5 0 2 I 0 630 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712373 1713342 246 + . gene_id 6 ; sequence gi|805793979|ref|XP_012142615.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1712373 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712373 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713342 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713342 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712373 1713342 246 + . alignment_id 6 ; Query gi|805793979|ref|XP_012142615.1| ; Align 1712373 385 273 ; Align 1713280 476 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793979|ref|XP_012142615.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 241 Query range: 362 -> 484 Target range: 1695554 -> 1695920 363 : LeuLeuIleHisValAlaIlePheSerValLeuMetGlyPheAspGlyTyrGluIl : 381 ||||||:!!:!! !! !|||||| |||::: !:!! !! ! !.! LeuLeuLeuTyrPheHisIlePheLeu***LeuIleTyrProAsnTyrSerIlePh 1695555 : CTGCTCCTATATTTTCATATCttcctttaattaatttacccTAATTATTCCATATT : 1695609 382 : eLeuLeuSerAsnAlaProLeuAlaArgArgCysThrPheIlePheHisValAlaG : 400 !:!!! !!!!:!!:!!|||! !:!!|||!.! ! !!!.:!!.!!:!!:!!|||| eValGlnThrAspSerProProSerArgAsnValGlyLeuValLeuAsnLeuAlaG 1695610 : TGTACAGACAGACTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAG : 1695666 401 : lySerPheIleHisLeuGlyIlePheThrPheCysCysSerGlyLeuThrGluGlu : 418 ||!!!!!. !!!.||| !!!:||||||!:! !!|||..!|||||||||..!||| lyThrLeuCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGlu 1695667 : GCACTTTGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAG : 1695720 419 : SerSerLysIleSerThrIleIleTyrPheGlySerTrpSerThrLeuProMetAs : 437 |||! ! ! :!!|||! ! !:!!!:! !! !!|||:!!!.!||||||||||| SerMetAspValSerArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAs 1695721 : AGCATGGACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGA : 1695777 438 : pGlnIleGlyLysSerIleArgSerLysIleIleIleValMetMetArgThrMetA : 456 |::!! !|||||||||:!:|||..!!..!!::!!!!:|||!!:||||||:!!! | pArgAsnGlyLysSerValArgGlnSerMetLeuMetValIleMetArgSerAsnA 1695778 : TAGAAATGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACA : 1695834 457 : rgProCysCysLeuThrAlaGlyGlyPhePheProValSerLeuLysThrPheThr : 474 || !|||||||||||||||.!!|||||||||||||||||||||:!!|||!:!||| rgCysCysCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyrThr 1695835 : GGTGTTGCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACT : 1695888 475 : ThrLeuLeuSerSerThrPheSerTyrPhe : 484 !:!!:!!!:!! ! ! ||| !||| GlyValIleAsn***AspThrSerIlePhe 1695889 : GGGGTAATTAATTAAGATACGTCCATTTTT : 1695920 vulgar: gi|805793979|ref|XP_012142615.1| 362 484 . KQ414915.1 1695554 1695920 + 241 M 122 366 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1695555 1695920 241 + . gene_id 7 ; sequence gi|805793979|ref|XP_012142615.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1695555 1695920 . + . KQ414915.1 exonerate:protein2genome:local exon 1695555 1695920 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1695555 1695920 241 + . alignment_id 7 ; Query gi|805793979|ref|XP_012142615.1| ; Align 1695555 363 366 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793979|ref|XP_012142615.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 240 Query range: 383 -> 487 Target range: 1708160 -> 1708472 384 : SerAsnAlaProLeuAlaArgArgCysThrPheIlePheHisValAlaGlySerPh : 402 ..!:!!.!!|||:!! !!:!||| !||||||:!:||||||:!!.!!|||!!!.! GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLe 1708161 : GAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCT : 1708215 403 : eIleHisLeuGlyIlePheThrPheCysCysSerGlyLeuThrGluGluSerSerL : 421 . !!!.||| !!!:||||||!:! !!|||..! !!|||! !..!||||||! !! uCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuA 1708216 : GTGCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGA : 1708272 422 : ysIleSerThrIleIleTyrPheGlySerTrpSerThrLeuProMetAspGlnIle : 439 !.:!::!!!.! !|||||| ! !!||||||! ! !||||||||||||::! ! snValAlaAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSer 1708273 : ACGTGGCCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCT : 1708326 440 : GlyLysSerIleArgSerLysIleIleIleValMetMetArgThrMetArgProCy : 458 |||::!! !:!:|||!.! ! :!:! !.!!|||!!: |||:!!! !||||| GlyArgMetLeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCy 1708327 : GGGCGAATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTG : 1708383 459 : sCysLeuThrAlaGlyGlyPhePheProValSerLeuLysThrPheThrThrLeuL : 477 ||||||||||||| !!|||||||||||||||||||||:!!|||!:!|||:!!:!!: sCysLeuThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSerValI 1708384 : CTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGGTAA : 1708440 478 : euSerSerThrPheSerTyrPheThrLeuMet : 487 !! !||||||||| ! .!.:!!:!!:!: leHisSerThrPheHisThrIleSerMetLeu 1708441 : TTCATTCAACATTTCACACGATATCGATGTTA : 1708472 vulgar: gi|805793979|ref|XP_012142615.1| 383 487 . KQ414915.1 1708160 1708472 + 240 M 104 312 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1708161 1708472 240 + . gene_id 8 ; sequence gi|805793979|ref|XP_012142615.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1708161 1708472 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708472 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1708161 1708472 240 + . alignment_id 8 ; Query gi|805793979|ref|XP_012142615.1| ; Align 1708161 384 312 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793979|ref|XP_012142615.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 168 Query range: 241 -> 354 Target range: 1699025 -> 1699863 242 : IleValSerAsnIleGlyLysAsnLysSerGluArgIleLeuProLeuAspValTr : 260 |||:!!:::|||||||||:::|||!..|||!!:|||:!:||||||!!!:!!:!!|| IleLeuAlaAsnIleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTr 1699026 : ATTTTAgcaaatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTG : 1699080 261 : pPheAsnPheProSerThrGluThrProTyrTyr{Gl} >>>> Target Intr : 272 | !!:!!!!.||| !:!!! !:!!||| |||{||} 499 bp pValAspLeuProLeuSerValSerProThrTyr{Gl}-- 1699081 : GGTTGATTTGCCGCTGTCTGTGTCACCAACGTAC{GA}aa................ : 1699120 273 : on 1 >>>> {u}PheMetPheThrPheGlnIleIleSerValPheLeuValGly : 286 {|} !.!. ! ! |||:!!:!:|||:!!!:!! !|||||| ++{u}AspPheValPheAlaGlnValLeuSerLeuTyrHisValGly 1699121 : .........ag{A}GATTTTGTGTTTGCACAGGTTCTGTCTTTGTACCACGTTGGT : 1699657 287 : ThrAlaTyrValSerProAspThrLeuLeuCysIleLeuAsnLeuHisValIleTy : 305 ..!..!|||:!!!!! !|||!.!|||||||||:!::!!|||||||||!.! ! ValCysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaTh 1699658 : GTATGTTACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTAC : 1699714 306 : rGlnPheArgMetLeuHisTyrArgMetLeuArgLeuTrpLysArgAsnAsnGlyA : 324 !|||||||||!!:|||!!.||||||:!:! !!.!||| ! ! ! !|||!.. !. rGlnPheArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysG 1699715 : TCAATTTCGTATACTGCAATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGC : 1699771 325 : snThrAspAlaThrLysTyrAlaIleGlnCysSerGluAspLeuArgLysCysVal : 342 !...!|||! !!.!:!!! !::! ! |||... ! !..!!!.||| ! lnValAspAspAsnGluSerSerAlaAlaLeuSerArgPheAlaGluAsnCysTyr 1699772 : AAGTAGATGACAATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTAT : 1699825 343 : AsnGluTyrGlnSerLeuIleGluPheCysGluAsn : 354 !!.! !!:!:!!!:!! !:!!..! !:!!||| LysAlaPheLysAsnCysValArgGlnHisGlnAsn 1699826 : AAGGCGTTTAAAAATTGCGTACGACAACATCAGAAT : 1699863 vulgar: gi|805793979|ref|XP_012142615.1| 241 354 . KQ414915.1 1699025 1699863 + 168 M 30 90 S 0 2 5 0 2 I 0 495 3 0 2 S 1 1 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699026 1699863 168 + . gene_id 9 ; sequence gi|805793979|ref|XP_012142615.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1699026 1699117 . + . KQ414915.1 exonerate:protein2genome:local exon 1699026 1699117 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699118 1699119 . + . intron_id 1 ; splice_site "AA" KQ414915.1 exonerate:protein2genome:local intron 1699118 1699616 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699615 1699616 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699617 1699863 . + . KQ414915.1 exonerate:protein2genome:local exon 1699617 1699863 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699026 1699863 168 + . alignment_id 9 ; Query gi|805793979|ref|XP_012142615.1| ; Align 1699026 242 90 ; Align 1699618 273 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793979|ref|XP_012142615.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 154 -> 243 Target range: 1698532 -> 1698799 155 : IlePheThrPheGlnTyrSerValTyrAlaSerCysAsnValLeuCysThrIleMe : 173 |||||| ... !!!!!!.!|||.!!:!!||||||:!!|||||| !||||| IlePheGlnLeu***AspCysAlaTyrThrAlaCysAsnIleLeuCysLeuIleMe 1698533 : atttttcaattataggACTGTGCTTACACCGCTTGTAACATTCTCTGCCTGATTAT : 1698587 174 : tAlaAlaSerLysIleLeuValLeuArgIleArgArgLeuGluLeuGluAsnIleL : 192 |!.! !! !|||:!:!!!|||:!! !|||!.!||| !|||!!! .!.:!:| tValLeuLeuLysLeuPheValValPheIleHisArgLysGluPheIleGluLeuL 1698588 : GGTACTGTTAAAGCTGTTCGTTGTATTCATACACAGGAAAGAATTCATCGAACTgc : 1698644 193 : euAlaAspAlaGluArgHisPheTrpHisTrpAsnTyrAsnSerGluGluGlnLeu : 210 ||... ::::::||||||||| ||||||:!!!!!.!.|||! !||| euValTyrMetTyrLysAsnPheTrpHisLeuAsnTyrAspCysAsnGluLeuLeu 1698645 : ttgtatatatgtacaaaaatttttggcACCTCAATTACGATTGCAACGAACTACTA : 1698698 211 : LeuPheSerGluCysArgLeuIleCysLysTyrPheIleMetPheValLeuSerIl : 229 |||.!...!!!:|||||| !||| !!! ! !|||! !!!.:!! !! ! LeuLeuGlnAspCysArgArgIleSerThrIleCysIleThrLeuIleAsnPheCy 1698699 : CTGCTGCAAGACTGCAGAAGAATTAGCACTATATGTATCACGTTGATTAACTTCTG : 1698755 230 : eProProAlaSerLeuPheGlyTyrValIleThrProIleVal : 243 ! !!! !!.!!!!:!! !!.!!||||||:!!|||||||||:!! sAlaGlnGlyThrIleValSerTyrValLeuThrProIleIle 1698756 : TGCTCAAGGCACAATTGTCAGCTACGTGCTAACACCTATTATA : 1698799 vulgar: gi|805793979|ref|XP_012142615.1| 154 243 . KQ414915.1 1698532 1698799 + 158 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1698533 1698799 158 + . gene_id 10 ; sequence gi|805793979|ref|XP_012142615.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1698533 1698799 . + . KQ414915.1 exonerate:protein2genome:local exon 1698533 1698799 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1698533 1698799 158 + . alignment_id 10 ; Query gi|805793979|ref|XP_012142615.1| ; Align 1698533 155 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793979|ref|XP_012142615.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 384 -> 474 Target range: 1682541 -> 1682808 385 : AsnAlaProLeuAlaArgArgCysThrPheIlePheHisValAlaGlySerPheIl : 403 |||!.! !||| !!:!|||! !|||:!! !:!! !! !|||.!! ! || AsnGlyValLeuMetLysArgLeuLeuPheLeuAsnTyrPheLeuGlyGlyValIl 1682542 : AACGGTGTATTGATGAAACGATTGTTGTTCCTAAATTACTTTCTCGGTGGAGTGAT : 1682596 404 : eHisLeuGlyIlePheThrPheCysCysSerGlyLeuThrGluGluSerSerLysI : 422 |...::: :::...|||.!. !|||!:!! !:!!! !|||:!!|||.!! | eGlnIlePheLeuIleThrLeuAsnCysAsnAspIleMetGluGlnSerGlyAlaI 1682597 : acagatatttttaataacccTAAATTGCAACGACATAATGGAGCAAAGTGGCGCTA : 1682653 423 : leSerThrIleIleTyrPheGlySerTrpSerThrLeuProMetAspGlnIleGly : 440 ||.!!||| |||||| ! !!!:!|||..!! ! :::...... leGlyThrAlaIleTyrSerCysAsnTrpGluArgAsnValTyrAsnHisPhe--- 1682654 : TAGGAACAGCGATCTACAGTTGTAATTGGGAGAGGAAtgtttataatcatttt--- : 1682707 441 : LysSerIleArgSerLysIleIleIleValMetMetArgThrMetArgProCysCy : 459 ..!.!!|||!.! ! !!:!!:|||||||||:!:|||.!!! |||||||||! TyrGlnPheArgLysAspMetMetIleValMetValArgAlaLysArgProCysTy 1682708 : taccAGTTCAGAAAGGATATGATGATTGTAATGGTACGAGCGAAACGTCCTTGCTA : 1682761 460 : sLeuThrAlaGlyGlyPhePheProValSerLeuLysThrPheThr : 474 !:!!:!!|||!.! !|||||||||:!!||||||:!!:!!|||||| rIleSerAlaAlaLysPhePheProIleSerLeuGluSerPheThr 1682762 : CATTTCAGCAGCGAAATTCTTTCCAATCTCCCTTGAATCGTTCACG : 1682808 vulgar: gi|805793979|ref|XP_012142615.1| 384 474 . KQ414915.1 1682541 1682808 + 140 M 55 165 G 1 0 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682542 1682808 140 + . gene_id 11 ; sequence gi|805793979|ref|XP_012142615.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1682542 1682808 . + . KQ414915.1 exonerate:protein2genome:local exon 1682542 1682808 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1682542 1682808 140 + . alignment_id 11 ; Query gi|805793979|ref|XP_012142615.1| ; Align 1682542 385 165 ; Align 1682707 441 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793979|ref|XP_012142615.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 243 -> 280 Target range: 1706998 -> 1707109 244 : SerAsnIleGlyLysAsnLysSerGluArgIleLeuProLeuAspValTrpPheAs : 262 ..!!::||||||||||||:::|||:!:||||||||| !:!!:!! !!|||.!!:! GluSerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAs 1706999 : GAAAgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGA : 1707053 263 : nPheProSerThrGluThrProTyrTyrGluPheMetPheThrPheGlnIleIle : 280 !||||||!!!||| !|||||||||||||||.!.:!:||||||! |||:!!||| pPheProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGlnValIle 1707054 : CTTTCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGGTAATA : 1707109 vulgar: gi|805793979|ref|XP_012142615.1| 243 280 . KQ414915.1 1706998 1707109 + 123 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1706999 1707109 123 + . gene_id 12 ; sequence gi|805793979|ref|XP_012142615.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1706999 1707109 . + . KQ414915.1 exonerate:protein2genome:local exon 1706999 1707109 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1706999 1707109 123 + . alignment_id 12 ; Query gi|805793979|ref|XP_012142615.1| ; Align 1706999 244 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793979|ref|XP_012142615.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 118 -> 159 Target range: 1711216 -> 1711339 119 : ValThrThrProIleValTyrAsnIleGlyArgAsnLysSerAspArgGluPhePr : 137 :!! !|||! !:!! ! |||||||||||||||:!!||||||||| !.!.|| LeuAspThrArgValSerValAsnIleGlyArgAsnGluSerAspArgIleLeuPr 1711217 : CTCGATACTCGTGTTTCAGTGAATATTGGAAGAAACGAATCCGACAGAATACTGCC : 1711271 138 : oLeuGluIleArgSerAspLeuProLeuThrGluThrProTyrPheGluLeuIleP : 156 |!!!:!!!!: !!! !|||:!!||| !:!! !|||||||||||||||:::...| oPheLysMetTrpIleAspIleProThrSerMetThrProTyrPheGluIlePheP 1711272 : GTTTAAAATGTGGATTGATATACCGACATCGATGACACcgtattttgaaatattct : 1711328 157 : heThrPheGln : 159 |||||!!.||| heThrLeuGln 1711329 : tcaccTTACAG : 1711339 vulgar: gi|805793979|ref|XP_012142615.1| 118 159 . KQ414915.1 1711216 1711339 + 108 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711217 1711339 108 + . gene_id 13 ; sequence gi|805793979|ref|XP_012142615.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1711217 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711217 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711217 1711339 108 + . alignment_id 13 ; Query gi|805793979|ref|XP_012142615.1| ; Align 1711217 119 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793982|ref|XP_012142616.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 502 Query range: 0 -> 284 Target range: 1710902 -> 1713318 1 : MetThrMetIleLysMetPheIleLeuGlnAlaArgArgValGlnIleAlaLysIl : 19 ||| !! ||||||!!:.!!|||||| !!.!!:!! !:!!.!! !::::! MetProAlaIleLysIleIleIleLeuPheIleAsnLysGluGluPhePheArgLe 1710903 : ATGCCCGCTATCAAAATAATCATCCTGTTTATCAACAAGGAGGAGTTTTTCCGTTT : 1710957 20 : eLeuValTyrAlaGlnGlnHisPheTrpAsnAsnAspTyrAsnProGlnGluArgH : 38 ::!!||||||.!!:!!!:!!!.||| !|||...||||||||| !.!.|||||| uIleValTyrThrGluArgGlnPheMetAsnGlyAspTyrAsnGluAspGluArgL 1710958 : GATCGTGTACACAGAGCGACAATTCATGAACGGGGATTACAACGAGGACGAGAGGA : 1711014 39 : isIlePheLysMetCysValLysTyrSerThrTrpPheValIlePheValPheSer : 56 ! ||| ! ||| !::: !!!|||!::|||..! !|||:!!! ||| ysIleValPheAspCysLysArgLeuCysThrPhePheThrCysPheLeuSerSer 1711015 : AGATTGTGTTCGATTGTAAACGCCTGTGTACATTCTTCACTTGTTTCCTCTCATCT : 1711068 57 : ValProSerThrSerLeuThrGlyTyrValIleThrProIlePhe{A} >>>> T : 72 ||| !!! !:!!!!!:!! !..!||||||:!!|||||||||!:!{ } ValThrLeuSerCysValLeuSerTyrValValThrProIleTyr{I}++ 1711069 : GTGACTTTATCGTGCGTTCTCTCTTACGTCGTCACTCCAATTTAC{A}gt...... : 1711119 73 : arget Intron 1 >>>> {sp}IleAsnSerValCysValTyrIleIleGlyM : 83 761 bp { !} !.!. !:!!! !!.!||| !||||||: +-{le}AlaGlnValLeuSerAlaTyrGlnIleGlyV 1711120 : ...................at{TT}GCACAGGTTTTATCCGCGTATCAAATTGGCG : 1711910 84 : etGlyTyrValCysProAspIleLeuMetCysLeuLeuAsnValHisAlaValGly : 101 !!.!!|||! !||| !|||! !:!!:!:|||:!!:!!|||:!!||| !!.! ! alSerTyrGlyCysPheAspAsnValLeuCysIleMetAsnLeuHisLeuAlaThr 1711911 : TGAGTTACGGTTGCTTCGACAACGTTCTATGCATCATGAACCTACACTTGGCCACT : 1711964 102 : GlnPheArgIleLeuGlnTyrArgMetLeuAsnPheTrpAsnIleValCysLysAs : 120 ||||||||||||||||||:!!|||:!!:!!|||.!. ..!:!: ! !!|||.! GlnPheArgIleLeuGlnHisArgLeuValAsnIleAsnGlyLeuLysSerLysGl 1711965 : CAGTTTCGAATACTGCAACATAGACTGGTGAATATAAACGGTCTGAAGAGCAAACA : 1712021 121 : pSerAspProGluLys{T} >>>> Target Intron 2 >>>> {yr}ThrG : 128 .!!! |||||||||{ } 30 bp { !}.!!! nThr---ProGluLys{V}++ +-{al}AlaA 1712022 : GACA---CCGGAGAAA{G}gt.........................at{TT}GCGG : 1712072 129 : luGluCysTyrMetAlaLeuLysLysCysIleArgGlnHisGlnLeuIleIleVal : 146 !:.!.! !||| !.!!!!|||!:!|||:!!||||||||||||! !:!:!!:!.! spAsnSerTyrAspValPheLysArgCysValArgGlnHisGlnSerLeuMetAla 1712073 : ATAACTCTTACGACGTTTTCAAAAGATGCGTTCGTCAACATCAATCTCTGATGGCT : 1712126 147 : PheCysAsnMetMetGluSerValTyrSerThrThrIlePheIleHisValThrIl : 165 ||||||... :::|||...:::!:!|||! !! !|||.!. !!.:!! !:! PheCysGluLysLeuGluGluMetPheSerMetIleIleLeuGlyGlnLeuLeuVa 1712127 : TTCTgcgagaaactcgaagaaatgTTCAGTATGATTATACTGGGGCAATTGTTAGT : 1712183 166 : eValSerValLeuMetCysLeuAspTrpTyrGluIleLeuLeu >>>> Target : 180 : !!|||:!!!!!|||||||||||| !! !:!!:!!|||||| 1 lPheSerIlePheMetCysLeuAspValCysGlnValLeuLeu++ 1712184 : GTTCAGTATTTTTATGTGTCTCGACGTGTGCCAAGTACTTCTGgt........... : 1712230 181 : Intron 3 >>>> AlaAsnProGlyAsnAlaMetArgLeuIlePheIlePheH : 193 42 bp !!..! !!..! !.!! !:!:::|||||| |||| ++ProGlyAlaSerValGlyLysGlnMetIlePheThrPheH 1712231 : ..............agCCAGGTGCATCTGTGGGTAAACAGAtgattttcacgtttc : 1712409 194 : isMetLeuGlySerLeuGlyHisLeuCysIleLeuThrCysSerCysHisTyrMet : 211 ||::: !|||!!!:!! !!!!.||| !!:!!!|||! !|||||| !!! !!!: isLeuAlaGlyCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIle 1712410 : acctAGCGGGATGTATGTGTCAATTGCTGATGTTTACGTACAGCTGCGATTGTATA : 1712463 212 : MetGluGluSerSerAsnIleValArgAlaAlaTyrGlyGlySerTrpSerSerLe : 230 !!: !||||||! !|||:!:..!..!|||!.!|||! !||| !!||| !! !!|| IleThrGluSerLeuAsnValThrGluAlaValTyrAspGlyProTrpProArgLe 1712464 : ATAACGGAAAGTTTGAACGTGACGGAAGCGGTGTACGATGGACCATGGCCACGTTT : 1712520 231 : uProMetAsnGlnSerGlyArgSerLeuArgThrAlaMetMetPheIleMetIleA : 249 |||||||!:! !!!!||||||! !:!!|||! !! !:!!!!:.!!:!!!!:|||| uProMetSerThrArgGlyArgMetIleArgLysAspLeuIleLeuValIleIleA 1712521 : GCCAATGAGCACGAGAGGAAGAATGATAAGGAAGGATTTGATACTCGTTATCATAA : 1712577 250 : rgAlaMetLysProCysCysIleThrAlaAlaGlyPhePheProValSerLeuGlu : 267 ||:!!! !|||||||||:!:|||||| !||||||||| !:!!||||||||| rgSerArgValProCysCysLeuThrAlaArgGlyPhePheValIleSerLeuGlu 1712578 : GATCGAGAGTACCTTGTTGCTTGACCGCCAGAGGATTCTTCGTAATATCTTTGGAA : 1712631 268 : ThrPheThrThr >>>> Target Intron 4 >>>> IleLeuSerSerThr : 276 |||!:!|||! ! 634 bp :!!:!!|||!!!.!! ThrTyrThrLys++ ++ValIleSerThrAla 1712632 : ACGTATACGAAGgt.........................agGTTATAAGTACAGCA : 1713292 277 : PheSerTyrPheThrLeuMetArg : 284 ! |||||||||||||||:!:||| ValSerTyrPheThrLeuLeuArg 1713293 : GTGTCGTACTTCACACTGTTAAGG : 1713318 vulgar: gi|805793982|ref|XP_012142616.1| 0 284 . KQ414915.1 1710902 1713318 + 502 M 71 213 S 0 1 5 0 2 I 0 757 3 0 2 S 1 2 M 49 147 G 1 0 M 3 9 S 0 1 5 0 2 I 0 26 3 0 2 S 1 2 M 53 159 5 0 2 I 0 138 3 0 2 M 92 276 5 0 2 I 0 630 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1710903 1713318 502 + . gene_id 1 ; sequence gi|805793982|ref|XP_012142616.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1710903 1711116 . + . KQ414915.1 exonerate:protein2genome:local exon 1710903 1711116 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711117 1711118 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711117 1711877 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711876 1711877 . + . intron_id 0 ; splice_site "AT" KQ414915.1 exonerate:protein2genome:local cds 1711878 1712036 . + . KQ414915.1 exonerate:protein2genome:local exon 1711878 1712036 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1712037 1712038 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712037 1712066 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1712065 1712066 . + . intron_id 1 ; splice_site "AT" KQ414915.1 exonerate:protein2genome:local cds 1712067 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1712067 1712227 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712228 1712229 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712228 1712369 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1712368 1712369 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1712370 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712370 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713318 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713318 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1710903 1713318 502 + . alignment_id 1 ; Query gi|805793982|ref|XP_012142616.1| ; Align 1710903 1 213 ; Align 1711880 73 147 ; Align 1712027 123 9 ; Align 1712069 127 159 ; Align 1712370 180 276 ; Align 1713280 272 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793982|ref|XP_012142616.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 407 Query range: 64 -> 284 Target range: 1707349 -> 1709234 65 : TyrValIleThrProIlePheAspIleAsnSerValCysValTyrIleIleGlyMe : 83 |||..!! ! ! !:!:!!....:!!.!. ! !! !||| !:!! !!!! TyrThrSerLeuCysLeuLeuSerLeuGlnValPheIleValMetTyrValCysIl 1707350 : TACACCAGTTTATGTCTGTTATCGCTACAGGTTTTTATCGTAATGTACGTTTGCAT : 1707404 84 : tGlyTyrValCysProAspIleLeuMetCysLeuLeuAsnValHisAlaValGlyG : 102 :.!!|||:!!||| !|||! !!!!:!!|||:!!:!!|||:!!|||.!!!.! !| eSerTyrLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrG 1707405 : AAGCTACCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTC : 1707461 103 : lnPheArgIleLeuGlnTyrArgMetLeuAsnPheTrpAsnIleValCysLysAsp : 120 |||||||||||||||||||||||:!!! !||| ! !! ..! ! ! :::... lnPheArgIleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSer 1707462 : AATTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgc : 1707515 121 : SerAspProGluLysTyrThr<-><-><-><->GluGluCysTyrMetAlaLeuLy : 135 ... ...||| ||| !!:||||||||| !!!!|| AspLysIleSerLysLysThrProSerAsnSerAspGluCysTyrAlaLysPheLy 1707516 : gataaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAA : 1707572 136 : sLysCysIleArgGlnHisGlnLeuIleIleValPheCysAsnMetMetGluSerV : 154 |!!.||||||!:!||||||||| !:!!|||! !!:!|||||| :!::!!..!| sAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluV 1707573 : AAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGG : 1707629 155 : alTyrSerThrThrIlePheIleHisValThrIleValSerValLeuMetCysLeu : 172 ||!:!.!! ! !:!:.!! !!!.||| !:!! !!|||:!!|||||||||||| alPheGlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeu 1707630 : TGTTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTC : 1707683 173 : AspTrpTyrGluIleLeu >>>> Target Intron 1 >>>> LeuAlaAsn : 181 ||| ! ||| !:!::!! 457 bp !! !!.! AspGlyTyrLeuValMet++ ++GluAspThr 1707684 : GATGGATATTTGGTGATGgt.........................agGAAGATACT : 1708167 182 : ProGlyAsnAlaMetArgLeuIlePheIlePheHisMetLeuGlySerLeuGlyHi : 200 ||| ! ! !..!||||||! !|||:!:||||||:!: !|||!!!||| !!!! Pro---IleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGl 1708168 : CCC---ATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCA : 1708221 201 : sLeuCysIleLeuThrCysSerCysHisTyrMetMetGluGluSerSerAsnIleV : 219 .|||! !!:!!!|||! !|||||| !!! !:!!!!:..!||||||! !|||:!:! nLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValA 1708222 : ACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGG : 1708278 220 : alArgAlaAlaTyrGlyGlySerTrpSerSerLeuProMetAsnGlnSerGlyArg : 237 .!!.!||| !|||! ! !!||||||! ! !|||||||||:!!::!||||||||| laAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArg 1708279 : CCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGA : 1708332 238 : SerLeuArgThrAlaMetMetPheIleMetIleArgAlaMetLysProCysCysIl : 256 ! !||||||! !! !:!!! |||:!!!!: !|||:!!! !|||||||||:! MetLeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLe 1708333 : ATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCT : 1708389 257 : eThrAlaAlaGlyPhePheProValSerLeuGluThrPheThrThr >>>> Tar : 272 !||||||..!|||||||||||||||||||||||||||!:!|||:!! uThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708390 : CACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt........ : 1708439 273 : get Intron 2 >>>> IleLeuSerSerThrPheSerTyrPheThrLeuMetA : 284 759 bp |||||||||!!!.!! |||||||||||||||:!:| ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuA 1708440 : .................agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTAC : 1709232 285 : rg : 284 || rg 1709233 : GA : 1709234 vulgar: gi|805793982|ref|XP_012142616.1| 64 284 . KQ414915.1 1707349 1709234 + 407 M 63 189 G 0 12 M 51 153 5 0 2 I 0 453 3 0 2 M 4 12 G 1 0 M 88 264 5 0 2 I 0 755 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707350 1709234 407 + . gene_id 2 ; sequence gi|805793982|ref|XP_012142616.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1707350 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707350 1707703 . + . insertions 12 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709234 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709234 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1707350 1709234 407 + . alignment_id 2 ; Query gi|805793982|ref|XP_012142616.1| ; Align 1707350 65 189 ; Align 1707551 128 153 ; Align 1708161 179 12 ; Align 1708173 184 264 ; Align 1709196 272 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793982|ref|XP_012142616.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 362 Query range: 123 -> 287 Target range: 1702184 -> 1703656 124 : GluLysTyrThrGluGluCysTyrMetAlaLeuLysLysCysIleArgGlnHisGl : 142 ...:::!:!.!!|||.!.||||||! !|||!!!|||!!.|||:!!||||||||||| SerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHisGl 1702185 : TCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACATCA : 1702239 143 : nLeuIleIleValPheCysAsnMetMetGluSerValTyrSerThrThrIlePheI : 161 | ! !|||..!!:!|||:!!! :!!.!...!:!!!:!!!!..!! !:!!.!! nAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValLeuG 1702240 : GAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTACTCG : 1702296 162 : leHisValThrIleValSerValLeuMetCysLeuAspTrpTyrGluIleLeuLeu : 179 !|||:!! !:!! !!|||:!!|||!!:||||||! ! ! !:!:!!:!:|||:!! lyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeuVal 1702297 : GACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTCGTG : 1702350 180 : >>>> Target Intron 1 >>>> AlaAsnProGlyAsnAlaMetArgLeu : 188 607 bp .!! ! ! ! |||! !|||||| ++ -+ThrProValThrProAlaArgArgLeu 1702351 : gt.........................ggACACCTGTGACTCCAGCGAGGCGGCTT : 1702984 189 : IlePheIlePheHisMetLeuGlySerLeuGlyHisLeuCysIleLeuThrCysSe : 207 ! !|||:!!||||||!!::!!||||||||| !!!!.|||! :!!!!!|||! !|| ThrPheValPheHisIleValGlySerLeuCysGlnLeuLeuLeuPheThrTyrSe 1702985 : ACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATTGCTATTTACCTATAG : 1703041 208 : rCysHisTyrMetMetGluGluSerSerAsnIleValArgAlaAlaTyrGlyGlyS : 226 |||| !! !:!!!!:|||||||||!!!||||||! !! !||| !||| !||| rCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaIleTyrLeuGlyP 1703042 : CTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGATATACCTCGGGC : 1703098 227 : erTrpSerSerLeuProMetAsnGlnSerGlyArgSerLeuArgThrAlaMetMet : 244 !!|||! ! !|||||||||:!!:!!:!!||||||!!!||||||! !! !:!!! roTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArgArgAspLeuThr 1703099 : CTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGAAGAGACTTGACA : 1703152 245 : PheIleMetIleArgAlaMetLysProCysCysIleThrAlaAlaGlyPhePhePr : 263 .!.:!!!!::!!|||:!!! ||| !! !!|||:!!||||||::!||||||||||| MetValIleValArgSerArgLysSerSerCysLeuThrAlaSerGlyPhePhePr 1703153 : ATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAGCGGATTCTTTCC : 1703209 264 : oValSerLeuGluThrPheThrThr >>>> Target Intron 2 >>>> Il : 272 ||||||||||||||||! !|||||| 373 bp :! oValSerLeuGluThrCysThrThr++ ++Va 1703210 : TGTTTCGCTGGAAACTTGTACCACGgt.........................agGT : 1703609 273 : eLeuSerSerThrPheSerTyrPheThrLeuMetArgAsnSerPhe : 287 :||||||!!!.!!.!.|||||||||||||||:!:|||:!!|||||| lLeuSerThrAlaMetSerTyrPheThrLeuLeuArgHisSerPhe 1703610 : GCTCAGTACAGCGATGTCATACTTCACTTTATTAAGGCACTCTTTT : 1703656 vulgar: gi|805793982|ref|XP_012142616.1| 123 287 . KQ414915.1 1702184 1703656 + 362 M 56 168 5 0 2 I 0 603 3 0 2 M 92 276 5 0 2 I 0 369 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702185 1703656 362 + . gene_id 3 ; sequence gi|805793982|ref|XP_012142616.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702185 1702352 . + . KQ414915.1 exonerate:protein2genome:local exon 1702185 1702352 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1702353 1702354 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1702353 1702959 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702958 1702959 . + . intron_id 0 ; splice_site "GG" KQ414915.1 exonerate:protein2genome:local cds 1702960 1703235 . + . KQ414915.1 exonerate:protein2genome:local exon 1702960 1703235 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1703236 1703237 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1703236 1703608 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1703607 1703608 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1703609 1703656 . + . KQ414915.1 exonerate:protein2genome:local exon 1703609 1703656 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702185 1703656 362 + . alignment_id 3 ; Query gi|805793982|ref|XP_012142616.1| ; Align 1702185 124 168 ; Align 1702960 180 276 ; Align 1703609 272 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793982|ref|XP_012142616.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 260 Query range: 70 -> 272 Target range: 1681938 -> 1682814 71 : PheAspIleAsnSerValCysValTyrIleIleGlyMetGlyTyrValCysProAs : 89 ||| !:!:.!.!!!:!!! !||| ! |||!!: !!!:! !||| !|| PheThrLeuGlnThrLeuSerValValHisSerGlyIleCysPheCysCysPheAs 1681939 : ttcaCTTTGCAGACATTATCTGTGGTGCATTCGGGAATTTGTTTCTGTTGTTTCGA : 1681993 90 : pIleLeuMetCysLeuLeuAsnValHisAlaValGlyGlnPheArgIleLeuGlnT : 108 |! !!!!:!!|||:!!|||!:!:!!|||!.!! !|||||||||!:!||||||||| pAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLysIleLeuGlnA 1681994 : CAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAGATTTTACAAA : 1682050 109 : yrArgMetLeuAsnPheTrpAsnIleValCysLysAspSerAspProGluLysTyr : 126 !!!:!:!: !..:!!:!! !!:!! ! |||... |||||| snLysLeu---------GlnThrValLeuSerGluLysSerSerLysGluLys--- 1682051 : ACAAACTC---------CAAACAGTATTGAGTGAGAAatcttcgaaagaaaaa--- : 1682095 127 : ThrGluGluCysTyrMetAlaLeuLysLysCysIleArgGlnHisGlnLeuIleIl : 145 ::: ! ! |||! ! !!!!|||:!!|||:!!!:! ! |||!!.|||:!!:! SerAlaGlyLeuTyrLysGluPheLysGluCysValGlnTyrHisHisLeuLeuLe 1682096 : tcagctGGACTGTATAAAGAGTTCAAGGAGTGCGTACAGTATCATCATTTGCTTCT : 1682149 146 : eValPheCysAsnMetMetGluSerValTyrSerThrThrIlePheIleHisValT : 164 ! !::: ... :::||| |||!:!!!!..! !!:!:.!.|||!!.:!! uSerTyrValGluLysLeuGluTyrValPheCysValProLeuMetIleGlnLeuL 1682150 : TTCGtacgtggaaaaattggaatacgTATTTTGTGTCCCGTTGATGATTCAATTGC : 1682206 165 : hrIleValSerValLeuMetCysLeuAspTrpTyrGluIleLeuLeu >>>> Ta : 180 !:!: !|||:!!:!!:!!|||:!!... !!!:!:!!:!!! !||| euValSerSerIleValLeuCysValSerGlyPheGlnLeuSerLeu++ 1682207 : TGGTGTCTAGCATAGTTCTGTGCGTCTCGGGGTTTCAACTATCATTGgt....... : 1682256 181 : rget Intron 1 >>>> AlaAsnProGlyAsnAlaMetArgLeuIlePheIle : 191 285 bp !.!||| !! ! !! ||||||:!:|||:!! ++ValAsnGlyValLeuMetLysArgLeuLeuPheLeu 1682257 : ..................agGTGAACGGTGTATTGATGAAACGATTGTTGTTCCTA : 1682572 192 : PheHisMetLeuGlySerLeuGlyHisLeuCysIleLeuThrCysSerCysHisTy : 210 !:!!.!.||||||.!!:!! ...::: ::::::||| !:!|||:!! ! AsnTyrPheLeuGlyGlyValIleGlnIlePheLeuIleThrLeuAsnCysAsnAs 1682573 : AATTACTTTCTCGGTGGAGTGATacagatatttttaataacccTAAATTGCAACGA : 1682629 211 : rMetMetGluGluSerSerAsnIleValArgAlaAlaTyrGlyGlySerTrpSerS : 229 !!!:||||||:!!|||.!! !|||! !! !||| !|||.!! !!!:!|||..!! pIleMetGluGlnSerGlyAlaIleGlyThrAlaIleTyrSerCysAsnTrpGluA 1682630 : CATAATGGAGCAAAGTGGCGCTATAGGAACAGCGATCTACAGTTGTAATTGGGAGA : 1682686 230 : erLeuProMetAsnGlnSerGlyArgSerLeuArgThrAlaMetMetPheIleMet : 247 !! |||... ..!!!!|||! !! !||||||.!!:!!||| rgAsnValTyrAsnHisPhe---TyrGlnPheArgLysAspMetMetIleValMet 1682687 : GGAAtgtttataatcatttt---taccAGTTCAGAAAGGATATGATGATTGTAATG : 1682737 248 : IleArgAlaMetLysProCysCysIleThrAlaAlaGlyPhePheProValSerLe : 266 :!!||||||! :::||||||! !|||:!!|||||| !|||||||||:!!||||| ValArgAlaLysArgProCysTyrIleSerAlaAlaLysPhePheProIleSerLe 1682738 : GTACGAGCGAAACGTCCTTGCTACATTTCAGCAGCGAAATTCTTTCCAATCTCCCT : 1682794 267 : uGluThrPheThrThrIle : 272 ||||:!!||||||! ::: uGluSerPheThrLysVal 1682795 : TGAATCGTTCACGAaggta : 1682814 vulgar: gi|805793982|ref|XP_012142616.1| 70 272 . KQ414915.1 1681938 1682814 + 260 M 40 120 G 3 0 M 12 36 G 1 0 M 53 159 5 0 2 I 0 281 3 0 2 M 56 168 G 1 0 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681939 1682814 260 + . gene_id 4 ; sequence gi|805793982|ref|XP_012142616.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681939 1682253 . + . KQ414915.1 exonerate:protein2genome:local exon 1681939 1682253 . + . insertions 0 ; deletions 4 KQ414915.1 exonerate:protein2genome:local splice5 1682254 1682255 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1682254 1682538 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1682537 1682538 . + . intron_id 0 ; splice_site "aG" KQ414915.1 exonerate:protein2genome:local cds 1682539 1682814 . + . KQ414915.1 exonerate:protein2genome:local exon 1682539 1682814 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1681939 1682814 260 + . alignment_id 4 ; Query gi|805793982|ref|XP_012142616.1| ; Align 1681939 71 120 ; Align 1682059 114 36 ; Align 1682095 127 159 ; Align 1682539 180 168 ; Align 1682707 237 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793982|ref|XP_012142616.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 255 Query range: 186 -> 284 Target range: 1689489 -> 1690076 187 : ArgLeuIlePheIlePheHisMetLeuGlySerLeuGlyHisLeuCysIleLeuTh : 205 ||||||||||||:!!|||||||||:!!||||||!!! !|||::: ......|| ArgLeuIlePheLeuPheHisMetIleGlySerPheIleHisIleIlePhePheTh 1689490 : CGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCacataattttcttcac : 1689544 206 : rCysSerCysHisTyrMetMetGluGluSerSerAsnIleValArgAlaAlaTyrG : 224 | !|||||| ! !:!!!!:|||||||||! !:!!|||!.!! !|||.!!|||! rTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleAlaThrAlaThrTyrA 1689545 : gtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCAACAGCAACGTATG : 1689601 225 : lyGlySerTrpSerSerLeuProMetAsnGlnSerGlyArgSerLeuArgThrAla : 242 .!|||! !|||!!! !||||||||||||:!! !|||!:!! !:!!||| ! ! laGlyMetTrpThrValLeuProMetAsnLysValGlyLysMetIleArgGlyAsn 1689602 : CAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAATGATACGAGGAAAT : 1689655 243 : MetMetPheIleMetIleArgAlaMetLysProCysCysIleThrAlaAlaGlyPh : 261 |||! !!!.!!:! :!!|||:!!:!!:!!||||||||||||||||||!.!||||| MetLysLeuMetThrValArgSerLeuGlnProCysCysIleThrAlaGlyGlyPh 1689656 : ATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAACTGCTGGTGGATT : 1689712 262 : ePheProValSerLeuGluThrPheThrThrIle{Le} >>>> Target Intr : 273 ||||||||||||||||:!!||| !|||.!!:!!{! } 293 bp ePheProValSerLeuLysThrAlaThrAlaVal{Tr}-+ 1689713 : CTTTCCTGTCTCCTTGAAAACTGCTACCGCGGTA{TG}ct................ : 1689752 274 : on 1 >>>> {u}SerSerThrPheSerTyrPheThrLeuMetArg : 284 {!}|||||||||.!.||||||||||||||||||||| +-{p}SerSerThrMetSerTyrPheThrLeuMetArg 1689753 : .........at{G}AGTTCCACAATGTCGTATTTCACGCTCATGAGA : 1690076 vulgar: gi|805793982|ref|XP_012142616.1| 186 284 . KQ414915.1 1689489 1690076 + 255 M 86 258 S 0 2 5 0 2 I 0 289 3 0 2 S 1 1 M 11 33 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1689490 1690076 255 + . gene_id 5 ; sequence gi|805793982|ref|XP_012142616.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1689490 1689749 . + . KQ414915.1 exonerate:protein2genome:local exon 1689490 1689749 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689750 1689751 . + . intron_id 1 ; splice_site "ct" KQ414915.1 exonerate:protein2genome:local intron 1689750 1690042 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1690041 1690042 . + . intron_id 0 ; splice_site "AT" KQ414915.1 exonerate:protein2genome:local cds 1690043 1690076 . + . KQ414915.1 exonerate:protein2genome:local exon 1690043 1690076 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1689490 1690076 255 + . alignment_id 5 ; Query gi|805793982|ref|XP_012142616.1| ; Align 1689490 187 258 ; Align 1690044 274 33 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793982|ref|XP_012142616.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 233 Query range: 189 -> 286 Target range: 1695647 -> 1696257 190 : PheIlePheHisMetLeuGlySerLeuGlyHisLeuCysIleLeuThrCysSerCy : 208 !!.:!!.!!:!!:!! !|||!!!||| !!!!.|||! !!!:!!!|||! !||||| LeuValLeuAsnLeuAlaGlyThrLeuCysGlnLeuPheMetPheThrTyrSerCy 1695648 : TTGGTACTCAACCTGGCAGGCACTTTGTGTCAACTTTTTATGTTCACGTACAGTTG : 1695702 209 : sHisTyrMetMetGluGluSerSerAsnIleValArgAlaAlaTyrGlyGlySerT : 227 | !! !:!!! ..!||||||! !:!!:!! !||||||!.!!:!!.! !! !!| sAspGlyLeuThrArgGluSerMetAspValSerArgAlaValPheAlaArgProT 1695703 : CGATGGTTTGACAAGAGAGAGCATGGACGTTAGCAGAGCTGTATTTGCAAGACCGT : 1695759 228 : rpSerSerLeuProMetAsnGlnSerGlyArgSerLeuArgThrAlaMetMetPhe : 245 ||:!!!:!|||||||||:!!::!!:!|||!:!|||:!!||| !::!|||:!:.!. rpAlaAsnLeuProMetAspArgAsnGlyLysSerValArgGlnSerMetLeuMet 1695760 : GGGCAAATCTGCCAATGGATAGAAATGGGAAAAGTGTGCGACAAAGCATGCTAATG : 1695813 246 : IleMetIleArgAlaMetLysProCysCysIleThrAlaAlaGlyPhePheProVa : 264 :!:!!:!!:|||:!!! !:! !||||||:!!||||||::!|||||||||||||| ValIleMetArgSerAsnArgCysCysCysLeuThrAlaSerGlyPhePheProVa 1695814 : GTGATCATGAGGTCGAACAGGTGTTGCTGCTTAACAGCCAGCGGGTTCTTTCCAGT : 1695870 265 : lSerLeuGluThrPheThrThr >>>> Target Intron 1 >>>> IleLe : 273 |||||||||||||!:!||| ! 319 bp :!!|| lSerLeuGluThrTyrThrGly++ ++ValLe 1695871 : TTCTCTCGAGACTTACACTGGGgt.........................agGTCCT : 1696216 274 : uSerSerThrPheSerTyrPheThrLeuMetArgAsnSer : 286 ||||!!!.!!.!.|||||||||||||||:!!|||.!.||| uSerThrAlaMetSerTyrPheThrLeuLeuArgGlnSer 1696217 : CAGCACTGCAATGTCATACTTTACACTACTGAGACAATCG : 1696257 vulgar: gi|805793982|ref|XP_012142616.1| 189 286 . KQ414915.1 1695647 1696257 + 233 M 82 246 5 0 2 I 0 315 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1695648 1696257 233 + . gene_id 6 ; sequence gi|805793982|ref|XP_012142616.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1695648 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695648 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696257 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696257 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1695648 1696257 233 + . alignment_id 6 ; Query gi|805793982|ref|XP_012142616.1| ; Align 1695648 190 246 ; Align 1696213 272 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793982|ref|XP_012142616.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 199 Query range: 0 -> 122 Target range: 1694039 -> 1695010 1 : MetThrMetIleLysMetPheIleLeuGlnAlaArgArgValGlnIleAlaLysIl : 19 !!:..!.!..!!|||!!:.!!:!!||| ! !!.!|||:!!:!!.!! ! !:! IleValPhePheLysIleLeuValLeuTyrLysHisArgIleGluPheTyrGlyLe 1694040 : ATCGTTTTCTTCAAGATCCTCGTTTTGTACAAGCACAGAATAGAATTCTACGGGTT : 1694094 20 : eLeuValTyrAlaGlnGlnHisPheTrpAsnAsnAspTyrAsnProGlnGluArgH : 38 !:!! !!:!.!!|||:!! ! ||||||:!! !||||||||| !!!:!|||!:! uIleArgPheThrGlnGluLysPheTrpHisPheAspTyrAsnSerArgGluLysL 1694095 : AATCAGGTTCACGCAAGAGAAATTCTGGCATTTCGACTATAATTCACGGGAGAAGT : 1694151 39 : isIlePheLysMetCysValLysTyrSerThrTrpPheValIlePheValPheSer : 56 |||!!.... !||| !||| !!!||| |||:!!:!! ! !! !! ! euIleLeuSerGluCysLysLysIleCysThrValPheIleValAlaPheSerPhe 1694152 : TAATTTTATCCGAGTGCAAGAAGATATGTACCGTTTTCATCGTTGCCTTCAGCTTC : 1694205 57 : ValProSerThrSerLeuThrGlyTyrValIleThrProIlePheAspIleAsnSe : 75 ! !!..! !!!!! !.!!|||||||||:!:|||||||||!!. .. CysThrGlnGlyThrCysAlaGlyTyrValValThrProIleLeuGlyAsnTyrLy 1694206 : TGTACTCAGGGCACGTGTGCTGGTTACGTAGTGACACCTATTTTAggtaattacaa : 1694262 76 : r >>>> Target Intron 1 >>>> <->ValCysValTyrIleIleGlyMe : 83 . 602 bp :!!||||||||| !:!!|||!! s-+ ++ThrLeuCysValTyrHisValGlyIl 1694263 : aat.........................agACACTTTGCGTGTACCATGTCGGTAT : 1694891 84 : tGlyTyrValCysProAspIleLeuMetCysLeuLeuAsnValHisAlaValGlyG : 102 : !!|||:!!||| !|||! !:!!:!: !!|||||||||:!!|||!.!!.! !| eCysTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrG 1694892 : ATGTTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTC : 1694948 103 : lnPheArgIleLeuGlnTyrArgMetLeuAsnPheTrpAsnIleValCysLysAsp : 120 |||||||||||||||||||||||.!.:!!|||!!. ! |||:!!:!! |||.!. lnPheArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLysGln 1694949 : AATTTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAA : 1695002 121 : SerAsp : 122 !!!||| ThrAsp 1695003 : ACAGAC : 1695010 vulgar: gi|805793982|ref|XP_012142616.1| 0 122 . KQ414915.1 1694039 1695010 + 199 M 75 225 5 0 2 I 0 598 3 0 2 G 0 3 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694040 1695010 199 + . gene_id 7 ; sequence gi|805793982|ref|XP_012142616.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694040 1694264 . + . KQ414915.1 exonerate:protein2genome:local exon 1694040 1694264 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694265 1694266 . + . intron_id 1 ; splice_site "at" KQ414915.1 exonerate:protein2genome:local intron 1694265 1694866 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694870 1695010 . + . KQ414915.1 exonerate:protein2genome:local exon 1694870 1695010 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694040 1695010 199 + . alignment_id 7 ; Query gi|805793982|ref|XP_012142616.1| ; Align 1694040 1 225 ; Align 1694870 76 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793982|ref|XP_012142616.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 190 Query range: 0 -> 139 Target range: 1698586 -> 1699830 1 : MetThrMetIleLysMetPheIleLeuGlnAlaArgArgValGlnIleAlaLysIl : 19 |||..!:!!:!!|||:!!|||:!!:!! !!.!||| !:!!.!! !:!!:! MetValLeuLeuLysLeuPheValValPheIleHisArgLysGluPheIleGluLe 1698587 : ATGGTACTGTTAAAGCTGTTCGTTGTATTCATACACAGGAAAGAATTCATCGAACT : 1698641 20 : eLeuValTyrAlaGlnGlnHisPheTrpAsnAsnAspTyrAsnProGlnGluArgH : 38 :||||||||| ::::::||||||:!! !:!!|||:!! !.!.|||! !! uLeuValTyrMetTyrLysAsnPheTrpHisLeuAsnTyrAspCysAsnGluLeuL 1698642 : gcttgtatatatgtacaaaaatttttggcACCTCAATTACGATTGCAACGAACTAC : 1698698 39 : isIlePheLysMetCysValLysTyrSerThrTrpPheValIlePheValPheSer : 56 :!:.!.:!! ||| !!:! !|||||| ! !:!!! !!.:!! !! ! euLeuLeuGlnAspCysArgArgIleSerThrIleCysIleThrLeuIleAsnPhe 1698699 : TACTGCTGCAAGACTGCAGAAGAATTAGCACTATATGTATCACGTTGATTAACTTC : 1698752 57 : ValProSerThrSerLeuThrGlyTyrValIleThrProIlePhe{A} >>>> T : 72 ! !!..! !!!!:!!..!.!!||||||:!!|||||||||.!.{!} CysAlaGlnGlyThrIleValSerTyrValLeuThrProIleIle{G}++ 1698753 : TGTGCTCAAGGCACAATTGTCAGCTACGTGCTAACACCTATTATA{G}gt...... : 1698803 73 : arget Intron 1 >>>> {sp}IleAsnSerValCysValTyrIleIleGlyM : 83 833 bp {!:}:!! ||| :!!||| !:!!|||: +-{lu}ValLeuSer------LeuTyrHisValGlyV 1698804 : ...................ac{AG}GTTCTGTCT------TTGTACCACGTTGGTG : 1699660 84 : etGlyTyrValCysProAspIleLeuMetCysLeuLeuAsnValHisAlaValGly : 101 !: !!|||:!!||| !|||! !|||:!!||||||:!!|||:!!||||||!.! ! alCysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThr 1699661 : TATGTTACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTACT : 1699714 102 : GlnPheArgIleLeuGlnTyrArgMetLeuAsnPheTrpAsnIleValCysLysAs : 120 ||||||||||||||||||||||||:!:! !|||!!. ! :!!! ! ! |||.! GlnPheArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysGl 1699715 : CAATTTCGTATACTGCAATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGCA : 1699771 121 : pSerAspProGluLysTyrThrGluGluCysTyrMetAlaLeuLysLysCysIleA : 139 . !||| !.!.:!!! !!:!! !! ! ! ! !:!!!!.||| !! nValAspAspAsnGluSerSerAlaAlaLeuSerArgPheAlaGluAsnCysTyrL 1699772 : AGTAGATGACAATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATA : 1699828 140 : rg : 139 :! ys 1699829 : AG : 1699830 vulgar: gi|805793982|ref|XP_012142616.1| 0 139 . KQ414915.1 1698586 1699830 + 190 M 71 213 S 0 1 5 0 2 I 0 829 3 0 2 S 1 2 M 3 9 G 2 0 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1698587 1699830 190 + . gene_id 8 ; sequence gi|805793982|ref|XP_012142616.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1698587 1698800 . + . KQ414915.1 exonerate:protein2genome:local exon 1698587 1698800 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1698801 1698802 . + . intron_id 1 ; splice_site "Gt" KQ414915.1 exonerate:protein2genome:local intron 1698801 1699633 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699632 1699633 . + . intron_id 0 ; splice_site "AC" KQ414915.1 exonerate:protein2genome:local cds 1699634 1699830 . + . KQ414915.1 exonerate:protein2genome:local exon 1699634 1699830 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local similarity 1698587 1699830 190 + . alignment_id 8 ; Query gi|805793982|ref|XP_012142616.1| ; Align 1698587 1 213 ; Align 1699636 73 9 ; Align 1699645 78 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793982|ref|XP_012142616.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 0 -> 70 Target range: 1687416 -> 1687626 1 : MetThrMetIleLysMetPheIleLeuGlnAlaArgArgValGlnIleAlaLysIl : 19 :!!.!!!!:.!!|||!!:|||||||||... !!.!|||..!:!!.!! !:!!|| LeuAlaIlePheLysIlePheIleLeuSerAsnHisArgThrGluPheLysGluIl 1687417 : CTGGCGATATTTAAGATTTTCATACTAAGCAATCACAGAACGGAATTCAAGGAGAT : 1687471 20 : eLeuValTyrAlaGlnGlnHisPheTrpAsnAsnAspTyrAsnProGlnGluArgH : 38 |:!!:!!|||||||||:!!|||||||||:!!:!!:!!|||!:! !:!!|||||| eValLeuTyrAlaGlnLysHisPheTrpHisAspAsnTyrSerLysGluGluArgV 1687472 : AGTCTTGTACGCGCAGAAGCATTTTTGGCATGATAATTACAGCAAAGAGGAGAGGG : 1687528 39 : isIlePheLysMetCysValLysTyrSerThrTrpPheValIlePheValPheSer : 56 :!!!:! ! ||| !!:!!:!!!!! ! !::||||||.!.:!!! !! ! alLeuTyrGlyAspCysGlnArgPheCysLysLeuTrpValIleLeuIleCysPhe 1687529 : TGCTTTATGGAGATTGCCAGAGGTTCTGCAAACTATGGGTCATACTAATATGTTTC : 1687582 57 : ValProSerThrSerLeuThrGlyTyrValIleThrProIle : 70 :!! !!..!.!!||||||..! !||| !!:!!||||||:!! LeuThrGlnAlaSerLeuValPheTyrPheValThrProLeu 1687583 : CTTACGCAAGCCTCTTTAGTGTTCTACTTTGTCACACCACTC : 1687626 vulgar: gi|805793982|ref|XP_012142616.1| 0 70 . KQ414915.1 1687416 1687626 + 139 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1687417 1687626 139 + . gene_id 9 ; sequence gi|805793982|ref|XP_012142616.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1687417 1687626 . + . KQ414915.1 exonerate:protein2genome:local exon 1687417 1687626 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1687417 1687626 139 + . alignment_id 9 ; Query gi|805793982|ref|XP_012142616.1| ; Align 1687417 1 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793982|ref|XP_012142616.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 123 -> 181 Target range: 1699803 -> 1699977 124 : GluLysTyrThrGluGluCysTyrMetAlaLeuLysLysCysIleArgGlnHisGl : 142 ...:::!:!.!!|||.!.||||||! !|||!!!|||!!.|||:!!||||||||||| SerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHisGl 1699804 : TCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACATCA : 1699858 143 : nLeuIleIleValPheCysAsnMetMetGluSerValTyrSerThrThrIlePheI : 161 | ! !|||..!!:!|||:!!! :!!.!...!:!!!:!!!!..!! !:!!.!! nAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValLeuG 1699859 : GAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTACTCG : 1699915 162 : leHisValThrIleValSerValLeuMetCysLeuAspTrpTyrGluIleLeuLeu : 179 !|||:!! !:!! !!|||:!!|||!!:||||||! ! ! !:!:!!:!:|||:!! lyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeuVal 1699916 : GACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTCGTA : 1699969 180 : AlaAsn : 181 ! !||| GluAsn 1699970 : GAAAAC : 1699977 vulgar: gi|805793982|ref|XP_012142616.1| 123 181 . KQ414915.1 1699803 1699977 + 134 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699804 1699977 134 + . gene_id 10 ; sequence gi|805793982|ref|XP_012142616.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1699804 1699977 . + . KQ414915.1 exonerate:protein2genome:local exon 1699804 1699977 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699804 1699977 134 + . alignment_id 10 ; Query gi|805793982|ref|XP_012142616.1| ; Align 1699804 124 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793982|ref|XP_012142616.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 75 -> 139 Target range: 1702019 -> 1702211 76 : ValCysValTyrIleIleGlyMetGlyTyrValCysProAspIleLeuMetCysLe : 94 :!!! !:!!||| !:!!|||:!: !!|||:!!||| !|||! !|||:!!||||| LeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLeuCysLe 1702020 : CTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTTGTGTTT : 1702074 95 : uLeuAsnValHisAlaValGlyGlnPheArgIleLeuGlnTyrArgMetLeuAsnP : 113 |:!!|||:!!||||||!.! !||||||||||||||||||||||||:!:! !|||! uMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnL 1702075 : GATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTATCGAACT : 1702131 114 : heTrpAsnIleValCysLysAspSerAspProGluLysTyrThrGluGluCysTyr : 131 !. ! :!!! ! ! |||.!. !||| !.!.:!!! !!:!! !! ! ! euGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAlaLeuSer 1702132 : TGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCTCTGTCT : 1702185 132 : MetAlaLeuLysLysCysIleArg : 139 ! !:!!!!.||| !!:! ArgPheAlaGluAsnCysTyrLys 1702186 : CGTTTCGCGGAGAACTGTTATAAG : 1702211 vulgar: gi|805793982|ref|XP_012142616.1| 75 139 . KQ414915.1 1702019 1702211 + 117 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702020 1702211 117 + . gene_id 11 ; sequence gi|805793982|ref|XP_012142616.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702020 1702211 . + . KQ414915.1 exonerate:protein2genome:local exon 1702020 1702211 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702020 1702211 117 + . alignment_id 11 ; Query gi|805793982|ref|XP_012142616.1| ; Align 1702020 76 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793965|ref|XP_012142612.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 573 Query range: 50 -> 329 Target range: 1711237 -> 1713321 51 : AsnLeuGlyLysAsnGluThrGluArgLeuLeuProPheLysMetTrpValAsnLe : 69 |||:!!|||!:!||||||:!!!!:|||:!!||||||||||||||||||:!!:!!:! AsnIleGlyArgAsnGluSerAspArgIleLeuProPheLysMetTrpIleAspIl 1711238 : AATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTGGATTGATAT : 1711292 70 : uProMetGlnLysThrProTyrPheGluIleGlyTyrIleAlaGln >>>> Tar : 85 !|||! ..!! !|||||||||||||||||| ::: !||| eProThrSerMetThrProTyrPheGluIlePhePheThrLeuGln++ 1711293 : ACCGACATCGATGACACcgtattttgaaatattcttcaccTTACAGgt........ : 1711342 86 : get Intron 1 >>>> ThrAsnIleThrValAsnLeuMetProArgPheValL : 97 459 bp ! !.!. !:!!:!:||| ::: --LysGlnArgSerIleAsnTyrLeuGlnPheVal***A 1711343 : .................tcAAGCAACGTTCGATcaattatttgcaatttgtatgaa : 1711835 98 : euAsnTyrArgPheGlnThrIleSerPheMetLysAspValPheLeuGlnThrLeu : 115 ::: ...||| :!:!!. ..!||| !|||..!||| sn***LeuMet***LysIlePheSerSerLeuAsnThrThrPheAlaGlnValLeu 1711836 : attaactcatgtgaaaaattttctcatcgCTTAATACAACATTTGCACAGGTTTTA : 1711889 116 : SerLeuCysThrIleGlyPheAlaTyrLeuCysIleAspAsnMetLeuCysIleIl : 134 ||| !! ! !|||||| ! ::!||| !|||.!!||||||:!:|||||||||!! SerAlaTyrGlnIleGlyValSerTyrGlyCysPheAspAsnValLeuCysIleMe 1711890 : TCCGCGTATCAAATTGGCGTGAGTTACGGTTGCTTCGACAACGTTCTATGCATCAT : 1711946 135 : eAsnLeuHisLeuAlaGlyGlnPheArgIleLeuGlnTyrArgLeuSerAspLysT : 153 :||||||||||||||| !||||||||||||||||||:!!|||||| !:!!! ! tAsnLeuHisLeuAlaThrGlnPheArgIleLeuGlnHisArgLeuValAsnIleA 1711947 : GAACCTACACTTGGCCACTCAGTTTCGAATACTGCAACATAGACTGGTGAATATAA : 1712003 154 : yrThrAlaGlnAspGlnAsnAsnValAspGlnGluSerLysAsnPheLeu<-><-> : 170 !! ! !:!!..!:!!.!.!.. !!!::!!! ..!! !:::.!!:!! snGlyLeuLysSerLysGlnThrProGluLysGlyGluThrSerIleIleAspSer 1712004 : ACGGTCTGAAGAGCAAACAGACACCGGAGAAAGGTGAAACGTCGATTATAGATTCG : 1712057 171 : <->TyrLeuAlaAsnAsnAlaSerAspValPheLysSerTyrIleArgGlnHisGl : 187 ! !!!|||:!!|||:!!! !||||||||||||!!!! !:!!||||||||||| ThrGluPheAlaAspAsnSerTyrAspValPheLysArgCysValArgGlnHisGl 1712058 : ACAGAATTTGCGGATAACTCTTACGACGTTTTCAAAAGATGCGTTCGTCAACATCA : 1712114 188 : nSerLeuMetGluTyrCysAspGluValGluAlaValPheSerIleValLeuLeuI : 206 ||||||||||! !:!|||:::::::::||| :::||||||!!::!!:!!||| nSerLeuMetAlaPheCysGluLysLeuGluGluMetPheSerMetIleIleLeuG 1712115 : ATCTCTGATGGCTTTCTgcgagaaactcgaagaaatgTTCAGTATGATTATACTGG : 1712171 207 : leGlnValLeuThrPheSerMetLeuIleCysLeuAspGlyTyrLeuIleLeuVal : 224 |||:!!|||..!||||||!!:!!!!!:|||||||||! !! !! !:!!|||:!! lyGlnLeuLeuValPheSerIlePheMetCysLeuAspValCysGlnValLeuLeu 1712172 : GGCAATTGTTAGTGTTCAGTATTTTTATGTGTCTCGACGTGTGCCAAGTACTTCTG : 1712225 225 : >>>> Target Intron 2 >>>> AlaGluMetAlaGlnArgLysValMet : 233 145 bp !.!! ! !.! !:!:!!:::::: ++ --GlyAlaSerValGlyLysGlnMetIle 1712226 : gt.........................caGGTGCATCTGTGGGTAAACAGAtgatt : 1712397 234 : PheIleCysHisPheAlaAlaThrValCysGlnLeuValMetPheSerTyrGlyCy : 252 ||| |||...|||!.! !:!!|||||||||:!!||||||!!!|||.!!|| PheThrPheHisLeuAlaGlyCysMetCysGlnLeuLeuMetPheThrTyrSerCy 1712398 : ttcacgtttcacctAGCGGGATGTATGTGTCAATTGCTGATGTTTACGTACAGCTG : 1712454 253 : sAspCysIleIleArgGluSerThrLysLeuAlaThrAlaAlaTyrSerGlyProT : 271 |||||||||||||! !|||||| !!!.:!!.!! !|||!.!|||..!||||||| sAspCysIleIleThrGluSerLeuAsnValThrGluAlaValTyrAspGlyProT 1712455 : CGATTGTATAATAACGGAAAGTTTGAACGTGACGGAAGCGGTGTACGATGGACCAT : 1712511 272 : rpLeuGlnLeuProProThrLysSerValArgGluValLysLysAspLeuIleMet : 289 ||! !!::|||||| !!:!! !!!!! !||| !:!!!:!||||||||||||:!: rpProArgLeuProMetSerThrArgGlyArgMetIleArgLysAspLeuIleLeu 1712512 : GGCCACGTTTGCCAATGAGCACGAGAGGAAGAATGATAAGGAAGGATTTGATACTC : 1712565 290 : LeuIleMetArgSerAsnIleProCysTyrLeuThrGlySerGlyPhePheIleAl : 308 :!!|||!!:||||||!..:!!||||||! !||||||!.!!!!|||||||||:!! ValIleIleArgSerArgValProCysCysLeuThrAlaArgGlyPhePheValIl 1712566 : GTTATCATAAGATCGAGAGTACCTTGTTGCTTGACCGCCAGAGGATTCTTCGTAAT : 1712622 309 : aSerLeuGluThrCysThrLys >>>> Target Intron 3 >>>> ValLe : 317 !||||||||||||! !|||||| 634 bp |||:! eSerLeuGluThrTyrThrLys++ ++ValIl 1712623 : ATCTTTGGAAACGTATACGAAGgt.........................agGTTAT : 1713283 318 : uThrThrAlaAlaSerTyrPheThrLeuLeuGlnGlu : 329 !!:!||||||!.!||||||||||||||||||::!:!! eSerThrAlaValSerTyrPheThrLeuLeuArgGln 1713284 : AAGTACAGCAGTGTCGTACTTCACACTGTTAAGGCAA : 1713321 vulgar: gi|805793965|ref|XP_012142612.1| 50 329 . KQ414915.1 1711237 1713321 + 573 M 34 102 5 0 2 I 0 455 3 0 2 M 85 255 G 0 9 M 55 165 5 0 2 I 0 141 3 0 2 M 91 273 5 0 2 I 0 630 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711238 1713321 573 + . gene_id 1 ; sequence gi|805793965|ref|XP_012142612.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1711238 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711238 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711798 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711797 1711798 . + . intron_id 0 ; splice_site "TC" KQ414915.1 exonerate:protein2genome:local cds 1711799 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1711799 1712227 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712228 1712229 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712228 1712372 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1712371 1712372 . + . intron_id 1 ; splice_site "CA" KQ414915.1 exonerate:protein2genome:local cds 1712373 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712373 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713321 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713321 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711238 1713321 573 + . alignment_id 1 ; Query gi|805793965|ref|XP_012142612.1| ; Align 1711238 51 102 ; Align 1711799 85 255 ; Align 1712063 170 165 ; Align 1712373 225 273 ; Align 1713280 316 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793965|ref|XP_012142612.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 549 Query range: 50 -> 334 Target range: 1707001 -> 1709252 51 : AsnLeuGlyLysAsnGluThrGluArgLeuLeuProPheLysMetTrpValAsnLe : 69 !:::::||||||||||||::::!:|||:!!||| ! !!!!..!.|||:!!:!!!! SerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAspPh 1707002 : AgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGACTT : 1707056 70 : uProMetGlnLysThrProTyrPheGluIleGlyTyrIleAlaGln >>>> Tar : 85 !|||! ! !|||||||||!:!|||||| !!:!! :!!||| eProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707057 : TCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt........ : 1707106 86 : get Intron 1 >>>> ThrAsnIleThrValAsnLeuMetProArgPheValL : 97 189 bp |||... :::... !!!:!!!. ! +-ThrLysGluPheGluSerPheProThrGlnLeuSerL 1707107 : .................aaacgaaggaatttgaaagttttccAACCCAATTATCAA : 1707329 98 : euAsnTyrArgPheGlnThrIleSerPheMetLysAspValPheLeuGlnThrLeu : 115 !!:!|||!!! ..! !!!! !:!: :!!! ||||||..!!!! ysSerTyrSerGluIleValTyrThrSerLeuCysLeuLeuSerLeuGlnValPhe 1707330 : AAAGTTACAGTGAAATCGTTTACACCAGTTTATGTCTGTTATCGCTACAGGTTTTT : 1707383 116 : SerLeuCysThrIleGlyPheAlaTyrLeuCysIleAspAsnMetLeuCysIleIl : 134 ! !:!! !:!! !!.!.::!||||||||||||||||||.!.||||||!!:|| IleValMetTyrValCysIleSerTyrLeuCysIleAspAsnPheLeuCysMetIl 1707384 : ATCGTAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTCTGTGCATGAT : 1707440 135 : eAsnLeuHisLeuAlaGlyGlnPheArgIleLeuGlnTyrArgLeuSerAspLysT : 153 |||||||||| !||| !||||||||||||||||||||||||||||||:!! !! eAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnValC 1707441 : CAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAATGTGT : 1707497 154 : yrThrAlaGlnAspGlnAsnAsnValAspGlnGluSerLysAsnPheLeuTyrLeu : 171 ! !|||.!.!!:!::!:: |||::: ||||||... ! !! ! ! ysGlyAlaAsnGluArgSer------AspLysIleSerLysLysThrProSerAsn 1707498 : GCGGTGCAAACGAACGTAgc------gataaaatttcgaaaaaaacaCCGTCCAAT : 1707545 172 : AlaAsnAsnAlaSerAspValPheLysSerTyrIleArgGlnHisGlnSerLeuMe : 190 :!!:!!.!...!! !! ! !||||||!:!! !|||!:!|||||||||:!!|||!! SerAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIl 1707546 : TCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCAT : 1707602 191 : tGluTyrCysAspGluValGluAlaValPheSerIleValLeuLeuIleGlnValL : 209 :|||||||||:!!|||:!!:!!! !||||||.!!:!! !!:!!||| !||||||| eGluTyrCysAsnGluLeuGlnGluValPheGlyLeuPheValLeuAlaGlnValL 1707603 : AGAATACTGTAACGAACTTCAAGAGGTGTTCGGTTTATTTGTGCTTGCACAAGTGT : 1707659 210 : euThrPheSerMetLeuIleCysLeuAspGlyTyrLeuIleLeu >>>> Targe : 224 || !||||||:!!|||!!:||||||||||||||||||:!::!! euLeuPheSerLeuLeuMetCysLeuAspGlyTyrLeuValMet++ 1707660 : TGCTCTTCAGTTTGTTAATGTGCCTCGATGGATATTTGGTGATGgt.......... : 1707706 225 : t Intron 2 >>>> ValAlaGluMetAlaGlnArgLysValMetPheIleCys : 236 457 bp ! !! ! !..!!:!::::!!! |||:!:! ! ++GluAspThrProIleMetGlnArgLeuThrPheLeuPhe 1707707 : ...............agGAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTT : 1708197 237 : HisPheAlaAlaThrValCysGlnLeuValMetPheSerTyrGlyCysAspCysIl : 255 |||.!..!!!.! !:!!|||||||||:!!||||||!!!|||.!!|||||||||:! HisLeuThrGlyCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysLe 1708198 : CACCTAACGGGATGCCTGTGCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCT : 1708254 256 : eIleArgGluSerThrLysLeuAlaThrAlaAlaTyrSerGlyProTrpLeuGlnL : 274 :|||||||||||| !!!.:!!|||!.!||| !|||..! !! !!|||:!!!!.| uIleArgGluSerLeuAsnValAlaAsnAlaIleTyrAspCysSerTrpIleHisL 1708255 : GATACGAGAAAGCTTGAACGTGGCCAATGCTATATACGACTGCTCGTGGATTCACT : 1708311 275 : euProProThrLysSerValArgGluValLysLysAspLeuIleMetLeuIleMet : 292 ||||| ! !!:!|||! !||| !:!!::!|||||||||! !.!.:!!||| euProMetAspArgSerGlyArgMetLeuArgLysAspLeuThrPheValIleGly 1708312 : TGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGACATTCGTCATTGGA : 1708365 293 : ArgSerAsnIleProCysTyrLeuThrGlySerGlyPhePheIleAlaSerLeuGl : 311 ||||||!..:!!||||||! !||||||!.!!!!||||||||| !!.!|||||||| ArgSerArgValProCysCysLeuThrAlaCysGlyPhePheProValSerLeuGl 1708366 : AGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGA : 1708422 312 : uThrCysThrLys >>>> Target Intron 3 >>>> ValLeuThrThrAl : 320 ||||! !|||..! 759 bp :!!|||!:!||||| uThrTyrThrSer++ ++IleLeuSerThrAl 1708423 : AACGTACACTTCGgt.........................agATTTTAAGTACCGC : 1709208 321 : aAlaSerTyrPheThrLeuLeuGlnGluThrGlnAsnAsnIle : 334 ||||||||||||||||||||||!:!:!! !:!! .!.||| aAlaSerTyrPheThrLeuLeuArgLysGlnGluAlaGluIle 1709209 : AGCGTCATACTTCACACTGCTACGAAAACAAGAAGCAGAAATA : 1709252 vulgar: gi|805793965|ref|XP_012142612.1| 50 334 . KQ414915.1 1707001 1709252 + 549 M 34 102 5 0 2 I 0 185 3 0 2 M 75 225 G 2 0 M 62 186 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707002 1709252 549 + . gene_id 2 ; sequence gi|805793965|ref|XP_012142612.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1707002 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707002 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707292 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707291 1707292 . + . intron_id 0 ; splice_site "aa" KQ414915.1 exonerate:protein2genome:local cds 1707293 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707293 1707703 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709252 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709252 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1707002 1709252 549 + . alignment_id 2 ; Query gi|805793965|ref|XP_012142612.1| ; Align 1707002 51 102 ; Align 1707293 85 225 ; Align 1707518 162 186 ; Align 1708161 224 276 ; Align 1709196 316 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793965|ref|XP_012142612.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 482 Query range: 109 -> 330 Target range: 1702004 -> 1703653 110 : ValPheLeuGlnThrLeuSerLeuCysThrIleGlyPheAlaTyrLeuCysIleAs : 128 |||||| !|||..!|||||||||! ! !:!!||| ! ..!|||:!!|||.!!|| ValPheAlaGlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAs 1702005 : GTGTTTGCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGA : 1702059 129 : pAsnMetLeuCysIleIleAsnLeuHisLeuAlaGlyGlnPheArgIleLeuGlnT : 147 ||||:!:||||||:!:!!:||||||||| !||| !||||||||||||||||||| pAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnT 1702060 : CAACCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAAT : 1702116 148 : yrArgLeuSerAspLysTyrThrAlaGlnAspGlnAsnAsnValAspGlnGluSer : 165 |||||||||||:!! ! ! !.!!.!. :!!.!. ! !|||.!.|||||| yrArgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSer 1702117 : ACAGGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCC : 1702170 166 : LysAsnPheLeu<->TyrLeuAlaAsnAsnAlaSerAspValPheLysSerTyrIl : 183 !.. !||| !!!!|||.!.|||..!! ! ! !.!||||||!:!! !:! SerAlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysVa 1702171 : AGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGT : 1702227 184 : eArgGlnHisGlnSerLeuMetGluTyrCysAspGluValGluAlaValPheSerI : 202 !||||||||||||!:!! !!!: !|||||| !!..!:!!.!.! !:!!|||!!!: lArgGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrV 1702228 : ACGACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGG : 1702284 203 : leValLeuLeuIleGlnValLeuThrPheSerMetLeuIleCysLeuAspGlyTyr : 220 !!:!!:!!||| !!!.:!!|||..!||||||:!:||||||||||||! !|||!:! alIleValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPhe 1702285 : TCATTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTC : 1702338 221 : LeuIleLeuValAlaGluMet{A} >>>> Target Intron 1 >>>> {la : 228 ! !:!:||||||!.!....!.{|} 613 bp {|| GlnValLeuValValArgPhe{A}-+ ++{la 1702339 : CAAGTGCTCGTGGTACGTTTC{G}tt.........................ag{CG : 1702976 229 : }GlnArgLysValMetPheIleCysHisPheAlaAlaThrValCysGlnLeuValM : 247 } |||::!:!!! |||:!!! !|||.!.!.!!.!!:!:!!|||||||||:!!: }---ArgArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLeuL 1702977 : }---AGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATTGC : 1703029 248 : etPheSerTyrGlyCysAspCysIleIleArgGluSerThrLysLeuAlaThrAla : 265 !:|||!!!|||.!!|||||| !!:!:|||..!|||||||||!!.:!!!.!|||||| euPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAla 1703030 : TATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCG : 1703083 266 : AlaTyrSerGlyProTrpLeuGlnLeuProProThrLysSerValArgGluValLy : 284 !||| !|||||||||:!!!!.|||||| ! !|||:!!! !|||..!:!!!: IleTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuAr 1703084 : ATATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAG : 1703140 285 : sLysAspLeuIleMetLeuIleMetArgSerAsnIleProCysTyrLeuThrGlyS : 303 !!:!||||||! !|||:!!|||:!:||||||!..! ! !! !!! !||||||!.!| gArgAspLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaS 1703141 : AAGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCA : 1703197 304 : erGlyPhePheIleAlaSerLeuGluThrCysThrLys >>>> Target Intr : 316 ||||||||||| !!.!||||||||||||||||||! ! 373 bp erGlyPhePheProValSerLeuGluThrCysThrThr++ 1703198 : GCGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGgt................ : 1703238 317 : on 2 >>>> ValLeuThrThrAlaAlaSerTyrPheThrLeuLeuGlnGluThr : 330 ||||||!:!|||||| !||||||||||||||||||::!.!.:!! ++ValLeuSerThrAlaMetSerTyrPheThrLeuLeuArgHisSer 1703239 : .........agGTGCTCAGTACAGCGATGTCATACTTCACTTTATTAAGGCACTCT : 1703651 vulgar: gi|805793965|ref|XP_012142612.1| 109 330 . KQ414915.1 1702004 1703653 + 482 M 60 180 G 0 3 M 58 174 S 0 1 5 0 2 I 0 609 3 0 2 S 1 2 G 1 0 M 86 258 5 0 2 I 0 369 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702005 1703653 482 + . gene_id 3 ; sequence gi|805793965|ref|XP_012142612.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702005 1702362 . + . KQ414915.1 exonerate:protein2genome:local exon 1702005 1702362 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1702363 1702364 . + . intron_id 1 ; splice_site "TT" KQ414915.1 exonerate:protein2genome:local intron 1702363 1702975 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702974 1702975 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1702976 1703235 . + . KQ414915.1 exonerate:protein2genome:local exon 1702976 1703235 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1703236 1703237 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1703236 1703608 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1703607 1703608 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1703609 1703653 . + . KQ414915.1 exonerate:protein2genome:local exon 1703609 1703653 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702005 1703653 482 + . alignment_id 3 ; Query gi|805793965|ref|XP_012142612.1| ; Align 1702005 110 180 ; Align 1702188 170 174 ; Align 1702978 230 258 ; Align 1703609 316 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793965|ref|XP_012142612.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 427 Query range: 109 -> 335 Target range: 1694854 -> 1696272 110 : ValPheLeuGlnThrLeuSerLeuCysThrIleGlyPheAlaTyrLeuCysIleAs : 128 :!!|||||||||||||||!!!:!!! ! !:!!|||.!...!|||:!!|||.!!|| LeuPheLeuGlnThrLeuCysValTyrHisValGlyIleCysTyrMetCysPheAs 1694855 : CTATTTCTGCAGACACTTTGCGTGTACCATGTCGGTATATGTTACATGTGCTTCGA : 1694909 129 : pAsnMetLeuCysIleIleAsnLeuHisLeuAlaGlyGlnPheArgIleLeuGlnT : 147 ||||!!:||| !!:!!:!:|||||||||:!!||| !||||||||||||||||||| pAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGlnPheArgIleLeuGlnT 1694910 : CAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAATTTCGTATCCTTCAAT : 1694966 148 : yrArgLeuSerAspLysTyrThrAlaGlnAspGlnAsnAsnValAspGlnGluSer : 165 |||||!!!! !:!! ! !!.!!.! !!::!!.!.!..! !! !:::||| yrArgPheMetAsnLeuSerAsnValIleGluLysGlnThrAspGlyArgGluLeu 1694967 : ACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAACAGACGGTcgagaattg : 1695020 166 : Lys<->AsnPheLeuTyrLeuAlaAsnAsnAlaSerAspValPheLysSerTyrIl : 183 ::: ...!:! ! !!!!!.!! !:!!::!! ! !!!.||||||! !:! GluIleGlyTyrThrAsnPheThrValAspSerTyrLeuGlnLeuLysSerCysVa 1695021 : gaaattggtTACACAAATTTCACAGTCGATAGTTACTTACAATTGAAGAGTTGCGT : 1695077 184 : eArgGlnHisGlnSerLeuMetGluTyrCysAspGluValGluAlaValPheSerI : 202 :!:! ! ||||||:!!|||! ! |||||| ! :!!:!!||| !:!!||||||: lGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeuGluAsnIlePheSerL 1695078 : GCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTGGAGAACATATTTTCGT : 1695134 203 : leValLeuLeuIleGlnValLeuThrPheSerMetLeuIleCysLeuAspGlyTyr : 220 !::!!:!!||| !||||||||| !.!.:!!|||:!!:!!||||||! |||||| euLeuValLeuGlyGlnValLeuPheLeuAlaMetValLeuCysLeuValGlyTyr 1695135 : TGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTACTTTGCCTCGTGGGATAT : 1695188 221 : <->LeuIleLeu >>>> Target Intron 1 >>>> ValAlaGluMetAla : 228 |||.!!||| 415 bp ..!! !..! !! GlnLeuPheLeu++ ++ThrAspSerProPro 1695189 : CAGCTATTTCTGgt.........................agACAGACTCACCACCT : 1695630 229 : GlnArgLysValMetPheIleCysHisPheAlaAlaThrValCysGlnLeuValMe : 247 ..!|||!!.||| !!.:!! !:!!.!.|||!.!|||:!!||||||||| !!|| SerArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrLeuCysGlnLeuPheMe 1695631 : TCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTTTGTGTCAACTTTTTAT : 1695687 248 : tPheSerTyrGlyCysAspCysIleIleArgGluSerThrLysLeuAlaThrAlaA : 266 ||||!!!|||.!!|||||| !!:!:! !|||||||||! ! ! :!!::!! !|||! tPheThrTyrSerCysAspGlyLeuThrArgGluSerMetAspValSerArgAlaV 1695688 : GTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATGGACGTTAGCAGAGCTG : 1695744 267 : laTyrSerGlyProTrpLeuGlnLeuProProThrLysSerValArgGluValLys : 284 .!!:!:!! !!|||||| !.!.|||||| ! !!:!!:!! !!:!...|||::! alPheAlaArgProTrpAlaAsnLeuProMetAspArgAsnGlyLysSerValArg 1695745 : TATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAATGGGAAAAGTGTGCGA : 1695798 285 : LysAspLeuIleMetLeuIleMetArgSerAsnIleProCysTyrLeuThrGlySe : 303 :!!..!:!!:!!|||:!!|||||||||||||||! !|||! !||||||!.!|| GlnSerMetLeuMetValIleMetArgSerAsnArgCysCysCysLeuThrAlaSe 1695799 : CAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTTGCTGCTTAACAGCCAG : 1695855 304 : rGlyPhePheIleAlaSerLeuGluThrCysThrLys >>>> Target Intro : 316 |||||||||| !!.!||||||||||||! !||| ! 319 bp rGlyPhePheProValSerLeuGluThrTyrThrGly++ 1695856 : CGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGgt................. : 1695896 317 : n 2 >>>> ValLeuThrThrAlaAlaSerTyrPheThrLeuLeuGlnGluThrG : 331 ||||||!:!|||||| !||||||||||||||||||::!:!!:!! ++ValLeuSerThrAlaMetSerTyrPheThrLeuLeuArgGlnSerT 1695897 : ........agGTCCTCAGCACTGCAATGTCATACTTTACACTACTGAGACAATCGA : 1696258 332 : lnAsnAsnIleSer : 335 ! !:!|||:!! hrMetSerIleAla 1696259 : CTATGAGCATAGCC : 1696272 vulgar: gi|805793965|ref|XP_012142612.1| 109 335 . KQ414915.1 1694854 1696272 + 427 M 57 171 G 0 3 M 54 162 G 0 3 M 3 9 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694855 1696272 427 + . gene_id 4 ; sequence gi|805793965|ref|XP_012142612.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694855 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694855 1695202 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 1 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696272 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696272 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694855 1696272 427 + . alignment_id 4 ; Query gi|805793965|ref|XP_012142612.1| ; Align 1694855 110 171 ; Align 1695029 167 162 ; Align 1695194 221 9 ; Align 1695618 224 276 ; Align 1696213 316 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793965|ref|XP_012142612.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 257 Query range: 109 -> 224 Target range: 1699623 -> 1699971 110 : ValPheLeuGlnThrLeuSerLeuCysThrIleGlyPheAlaTyrLeuCysIleAs : 128 |||||| !|||..!|||||||||! ! !:!!||| ! ..!|||:!!|||.!!|| ValPheAlaGlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAs 1699624 : GTGTTTGCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGA : 1699678 129 : pAsnMetLeuCysIleIleAsnLeuHisLeuAlaGlyGlnPheArgIleLeuGlnT : 147 ||||:!:||||||:!:!!:||||||||| !||| !||||||||||||||||||| pAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnT 1699679 : CAACCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAAT : 1699735 148 : yrArgLeuSerAspLysTyrThrAlaGlnAspGlnAsnAsnValAspGlnGluSer : 165 |||||||||||:!! ! ! !.!!.!. :!!.!. ! !|||.!.|||||| yrArgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSer 1699736 : ACAGGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCC : 1699789 166 : LysAsnPheLeu<->TyrLeuAlaAsnAsnAlaSerAspValPheLysSerTyrIl : 183 !.. !||| !!!!|||.!.|||..!! ! ! !.!||||||!:!! !:! SerAlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysVa 1699790 : AGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGT : 1699846 184 : eArgGlnHisGlnSerLeuMetGluTyrCysAspGluValGluAlaValPheSerI : 202 !||||||||||||!:!! !!!: !|||||| !!..!:!!.!.! !:!!|||!!!: lArgGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrV 1699847 : ACGACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGG : 1699903 203 : leValLeuLeuIleGlnValLeuThrPheSerMetLeuIleCysLeuAspGlyTyr : 220 !!:!!:!!||| !!!.:!!|||..!||||||:!:||||||||||||! !|||!:! alIleValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPhe 1699904 : TCATTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTC : 1699957 221 : LeuIleLeuVal : 224 ! !:!:|||||| GlnValLeuVal 1699958 : CAAGTGCTCGTA : 1699971 vulgar: gi|805793965|ref|XP_012142612.1| 109 224 . KQ414915.1 1699623 1699971 + 257 M 60 180 G 0 3 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699624 1699971 257 + . gene_id 5 ; sequence gi|805793965|ref|XP_012142612.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1699624 1699971 . + . KQ414915.1 exonerate:protein2genome:local exon 1699624 1699971 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699624 1699971 257 + . alignment_id 5 ; Query gi|805793965|ref|XP_012142612.1| ; Align 1699624 110 180 ; Align 1699807 170 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793965|ref|XP_012142612.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 192 Query range: 2 -> 86 Target range: 1694111 -> 1694463 3 : ArgAsnPhePheHisAlaAsnTyrAspAspTyrGluThrLeuValLeuIleAsnCy : 21 ..!!!.|||!::||| !:!!|||:!!... |||! !|||:!!||| !.!.|| GluLysPheTrpHisPheAspTyrAsnSerArgGluLysLeuIleLeuSerGluCy 1694112 : GAGAAATTCTGGCATTTCGACTATAATTCACGGGAGAAGTTAATTTTATCCGAGTG : 1694166 22 : sLysArgLysCysSerPhePheAlaCysThrPheValCysPheThrGluLeuThrI : 40 ||||!:!! !|||!!! !!||| ! !.!!||| !! !! !|||:!! !||| sLysLysIleCysThrValPheIleValAlaPheSerPheCysThrGlnGlyThrC 1694167 : CAAGAAGATATGTACCGTTTTCATCGTTGCCTTCAGCTTCTGTACTCAGGGCACGT : 1694223 41 : leIleSerTyrIlePheThrProLeuIle{G} >>>> Target Intron 1 > : 50 ! !.!!|||:!! ! ||||||:!!:!!{!} 100 bp ysAlaGlyTyrValValThrProIleLeu{A}++ 1694224 : GTGCTGGTTACGTAGTGACACCTATTTTA{g}gt...................... : 1694256 51 : >>> {ly}AsnLeuGlyLysAsnGluThrGluArgLeuLeuProPheLysMetTr : 66 {.!}|||:!!|||||||||:!!:!!||||||:!!|||||||||!!.||||| ++{la}AsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTr 1694257 : ...ag{CA}AATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTG : 1694401 67 : pValAsnLeuProMetGlnLysThrProTyrPheGluIleGlyTyrIleAlaGlnT : 85 ||||:!!!!!|||! ! !:!!||||||!:!|||:!! !!:!||| !|||. pValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGlnV 1694402 : GGTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGG : 1694458 86 : hrAsn : 86 .!!:! alSer 1694459 : TAAGC : 1694463 vulgar: gi|805793965|ref|XP_012142612.1| 2 86 . KQ414915.1 1694111 1694463 + 192 M 47 141 S 0 1 5 0 2 I 0 96 3 0 2 S 1 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694112 1694463 192 + . gene_id 6 ; sequence gi|805793965|ref|XP_012142612.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694112 1694253 . + . KQ414915.1 exonerate:protein2genome:local exon 1694112 1694253 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694254 1694255 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1694254 1694353 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694352 1694353 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694354 1694463 . + . KQ414915.1 exonerate:protein2genome:local exon 1694354 1694463 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694112 1694463 192 + . alignment_id 6 ; Query gi|805793965|ref|XP_012142612.1| ; Align 1694112 3 141 ; Align 1694356 51 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793965|ref|XP_012142612.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 111 -> 149 Target range: 1681944 -> 1682058 112 : LeuGlnThrLeuSerLeuCysThrIleGlyPheAlaTyrLeuCysIleAspAsnMe : 130 |||||||||||||||:!! ! |||.!!..!!:!! !|||.!!||||||.! LeuGlnThrLeuSerValValHisSerGlyIleCysPheCysCysPheAspAsnPh 1681945 : TTGCAGACATTATCTGTGGTGCATTCGGGAATTTGTTTCTGTTGTTTCGACAATTT : 1681999 131 : tLeuCysIleIleAsnLeuHisLeuAlaGlyGlnPheArgIleLeuGlnTyrArgL : 149 .|||||||||:!:!:!:!!|||:!!!.!|||||||||!:!||||||||| !!!:!| eLeuCysIleLeuSerMetHisValGlyGlyGlnPheLysIleLeuGlnAsnLysL 1682000 : CCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAGATTTTACAAAACAAAC : 1682056 150 : eu : 149 || eu 1682057 : TC : 1682058 vulgar: gi|805793965|ref|XP_012142612.1| 111 149 . KQ414915.1 1681944 1682058 + 114 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681945 1682058 114 + . gene_id 7 ; sequence gi|805793965|ref|XP_012142612.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1681945 1682058 . + . KQ414915.1 exonerate:protein2genome:local exon 1681945 1682058 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681945 1682058 114 + . alignment_id 7 ; Query gi|805793965|ref|XP_012142612.1| ; Align 1681945 112 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793965|ref|XP_012142612.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 49 -> 86 Target range: 1688053 -> 1688164 50 : GlyAsnLeuGlyLysAsnGluThrGluArgLeuLeuProPheLysMetTrpValAs : 68 !.!|||:!!.!!::!|||:!!:!!!!:|||:!!|||||||||||||||||||||:! AlaAsnMetSerArgAsnLysSerAspArgValLeuProPheLysMetTrpValAs 1688054 : GCAAATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTGGGTCGA : 1688108 69 : nLeuProMetGlnLysThrProTyrPheGluIleGlyTyrIleAlaGlnThrAsn : 86 !! !|||:!:... ! |||||||||!:!|||:!: !!:!! ! !|||..!::: pTrpProLeuSerAspThrProTyrTyrGluLeuMetPheThrPheGlnValSer 1688109 : TTGGCCGCTATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAGGTATCG : 1688164 vulgar: gi|805793965|ref|XP_012142612.1| 49 86 . KQ414915.1 1688053 1688164 + 107 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688054 1688164 107 + . gene_id 8 ; sequence gi|805793965|ref|XP_012142612.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1688054 1688164 . + . KQ414915.1 exonerate:protein2genome:local exon 1688054 1688164 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688054 1688164 107 + . alignment_id 8 ; Query gi|805793965|ref|XP_012142612.1| ; Align 1688054 50 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793965|ref|XP_012142612.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 160 -> 224 Target range: 1688460 -> 1688652 161 : ValAspGlnGluSerLysAsnPheLeuTyrLeuAlaAsnAsnAlaSerAspValPh : 179 ||| !.!.||| !!! !|||.!. ! ! ! !.!!|||!!...!! ! ! !.! ValIleAspGluArgThrAsnMetThrGluTyrThrAsnLysCysTyrThrLysLe 1688461 : GTCATCGACGAGCGAACGAACATGACCGAATACACGAACAAATGTTACACCAAGCT : 1688515 180 : eLysSerTyrIleArgGlnHisGlnSerLeuMetGluTyrCysAspGluValGluA : 198 .! !..!! !|||!:!.!.||||||||||||!!:|||!:!|||! :!!:!!||| uIleAspCysIleLysAsnHisGlnSerLeuIleGluPheCysValLysLeuGluA 1688516 : GATAGATTGCATCAAAAATCATCAGTCGTTGATCGAGTTCTGCGTGAAACTCGAGA : 1688572 199 : laValPheSerIleValLeuLeuIleGlnValLeuThrPheSerMetLeuIleCys : 216 !|||!:!!!!:!:..!:!!||| !!!.:!!:!!..!||||||:!!|||!!:||| snValTyrThrLeuThrIleLeuGlyHisIleValValPheSerLeuLeuMetCys 1688573 : ACGTGTACACGTTGACTATACTCGGCCACATAGTGGTCTTCAGCTTGTTGATGTGC : 1688626 217 : LeuAspGlyTyrLeuIleLeuVal : 224 !!!||| !||| !:!!:!!:!! PheAspThrTyrGluValValLeu 1688627 : TTCGACACGTACGAGGTAGTTCTG : 1688652 vulgar: gi|805793965|ref|XP_012142612.1| 160 224 . KQ414915.1 1688460 1688652 + 104 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688461 1688652 104 + . gene_id 9 ; sequence gi|805793965|ref|XP_012142612.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1688461 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688461 1688652 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688461 1688652 104 + . alignment_id 9 ; Query gi|805793965|ref|XP_012142612.1| ; Align 1688461 161 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793965|ref|XP_012142612.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 0 -> 50 Target range: 1698652 -> 1698802 1 : MetValArgAsnPhePheHisAlaAsnTyrAspAspTyrGluThrLeuValLeuIl : 19 ||| :::||||||:::||| !||||||||| ! !!||| !|||:!!||| MetTyrLysAsnPheTrpHisLeuAsnTyrAspCysAsnGluLeuLeuLeuLeuGl 1698653 : atgtacaaaaatttttggcACCTCAATTACGATTGCAACGAACTACTACTGCTGCA : 1698707 20 : eAsnCysLysArgLysCysSerPhePheAlaCysThrPheValCysPheThrGluL : 38 !:!!|||!:!|||! !!!!!.!.! ! ! !.!! !! !! !.!!:!! nAspCysArgArgIleSerThrIleCysIleThrLeuIleAsnPheCysAlaGlnG 1698708 : AGACTGCAGAAGAATTAGCACTATATGTATCACGTTGATTAACTTCTGTGCTCAAG : 1698764 39 : euThrIleIleSerTyrIlePheThrProLeuIleGly : 50 !||||||:!!||||||:!:.!.||||||:!!|||||| lyThrIleValSerTyrValLeuThrProIleIleGly 1698765 : GCACAATTGTCAGCTACGTGCTAACACCTATTATAGGt : 1698802 vulgar: gi|805793965|ref|XP_012142612.1| 0 50 . KQ414915.1 1698652 1698802 + 100 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1698653 1698802 100 + . gene_id 10 ; sequence gi|805793965|ref|XP_012142612.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1698653 1698802 . + . KQ414915.1 exonerate:protein2genome:local exon 1698653 1698802 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1698653 1698802 100 + . alignment_id 10 ; Query gi|805793965|ref|XP_012142612.1| ; Align 1698653 1 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805809121|ref|XP_012146759.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 220 -> 309 Target range: 807269 -> 807536 221 : IleLeuLeuLeuProSerAspAspLeuValAspIlePheThrTyrGlyLeuTyrValM : 240 :!::!! !||| !!!! ! ||| !|||! !!!.! ! ! !:!! :!!: LeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuMetV 807270 : CTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGATGG : 807327 241 : etIleValThrLeuMetLeuTyrLeuTyrSerTyrIleGlyGluGlnLeuGlnTyrGl : 259 !!! !:!! !:!!..!||||||||||||:!!||| |||.!. !|||:!!! .. alThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerAr 807328 : TGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCG : 807384 260 : uSerThrLysValAsnAspAlaTyrTyrAspAlaAsnTrpLeuLysLeuSerThrArg : 278 !!!! !:!!:!! .!.||| !||||||:!! !|||! !:::! ! ! !!.! gThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHis 807385 : AACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCAC : 807441 279 : AspGlnLysLeuLeuLeuTyrCysMetCysAsnGlyArgArgThrLeuSerLeuThrA : 298 ! !:! !||||||! !!!: !...|||!.! ! !!! ! !!:!!|||| AlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrA 807442 : GCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAG : 807501 299 : laGlyLysPheTyrSerPheSerLeuPheGlyPhe : 309 ||||||||||| ! !!.!.!:!|||||| !||| laGlyLysPheValProMetAsnLeuPheThrPhe 807502 : CCGGAAAATTCGTCCCGATGAATCTTTTCACTTTC : 807536 vulgar: gi|805809121|ref|XP_012146759.1| 220 309 . KQ414940.1 807269 807536 + 109 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807270 807536 109 + . gene_id 1 ; sequence gi|805809121|ref|XP_012146759.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807270 807536 . + . KQ414940.1 exonerate:protein2genome:local exon 807270 807536 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807270 807536 109 + . alignment_id 1 ; Query gi|805809121|ref|XP_012146759.1| ; Align 807270 221 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805809810|ref|XP_003705978.2| PREDICTED: putative odorant receptor 92a [Megachile rotundata] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 637 Query range: 191 -> 414 Target range: 117136 -> 118062 192 : GluAsnAlaArgHisLeuProTyrAlaPhePheLeuGluValArgGlySerProTrpT : 211 ...!..!.!|||!.!|||||||||!.!|||||||||||||||!:! !!!!||||||| SerThrValArgArgLeuProTyrValPhePheLeuGluValGlnGlnThrProTrpT 117137 : AGTACGGTTAGACGTTTGCCGTACGTGTTCTTTCTTGAGGTGCAACAAACGCCGTGGT : 117194 212 : yrGluIleAlaCysValLeuGlnPhePheSerValThrSerValGlyLeuThrSerVa : 230 ||||||||.!!|||!.!||||||.!.|||:!!:!! !!:!||||||:!!|||!!!|| yrGluIleThrCysAlaLeuGlnLeuPheAlaMetLeuAsnValGlyIleThrCysVa 117195 : ACGAGATCACTTGCGCCCTTCAGCTGTTCGCGATGTTGAACGTCGGCATCACCTGTGT : 117251 231 : lGlyValAspThrThrAlaAlaMetPheAlaLeuIleAlaCysGlyHisLeuAspVal : 249 |||||||||||||! !!.! !!:!:|||!.!|||:!!.!!|||!.!|||!!!|||||| lGlyValAspThrIleGlyProLeuPheValLeuLeuThrCysAlaHisPheAspVal 117252 : CGGAGTAGACACGATCGGTCCTCTCTTCGTCCTGCTCACTTGTGCTCATTTCGACGTG : 117308 250 : IleArgSerArgValGluSerLeuArgSerValAsp<-><->SerAsnSerValGln< : 267 ||||||||||||:!!|||||||||!.!:!!:!!||| |||!:!||||||||| IleArgSerArgIleGluSerLeuHisAlaIleAspArgSerSerSerSerValGlnT 117309 : ATTCGATCTCGAATCGAGAGTTTACACGCGATCGATCGTTCTTCGAGCAGCGTACAGA : 117368 268 : ->GluAspLeuArgAsnSerLeuIleHisHisGlnValIleLeu{Gl} >>>> Tar : 281 ..!:!!|||||| !! !:!!|||!.!|||!:!:!!:!!|||{||} hrArgAsnLeuArgValLeuValIleArgHisArgMetLeuLeu{Gl}++ 117369 : CGAGAAATCTCCGAGTCTTGGTGATCCGTCATCGAATGCTCCTC{GA}gt........ : 117417 282 : get Intron 1 >>>> {u}PheCysGluArgIleGluArgCysThrAsnValIle : 293 59 bp {|}||||||:!! !||||||||| !|||||||||!!: ++{u}PheCysGlnAspIleGluArgValThrAsnValMet 117418 : .................ag{G}TTTTGCCAGGACATCGAACGTGTTACGAACGTGATG : 117508 294 : LeuLeuThrGlnMetMetLeuSerThrTyrAsnValSerLeuValGlyPheLysLeuV : 313 !!!!!!||||||:!!.!. !||||||||||||:!!|||||||||||||||||||||: PhePheThrGlnLeuPheGlySerThrTyrAsnIleSerLeuValGlyPheLysLeuI 117509 : TTTTTCACGCAGCTGTTCGGTAGCACGTACAACATATCTTTAGTGGGCTTCAAGTTGA : 117568 314 : alGly >>>> Target Intron 2 >>>> AspAspProAsnLysPheLysTyr : 322 !!||| 56 bp |||||||||:!!|||!:!|||||| leGly++ ++AspAspProAspLysTyrLysTyr 117569 : TCGGGgt.........................agGACGATCCTGATAAATACAAGTAC : 117651 323 : ValThrGlnLeuLeuIleAlaValIleGlnLeuLeuLeuCysAsnTrpProAlaAspV : 342 :!!!:!||||||! !||||||:!!|||||||||!!!||||||||||||||||||||| IleSerGlnLeuSerIleAlaIleIleGlnLeuPheLeuCysAsnTrpProAlaAspP 117652 : ATCAGCCAACTCTCGATAGCCATCATCCAGCTTTTCCTCTGCAATTGGCCCGCAGATT : 117711 343 : alLeuLeuAlaLys >>>> Target Intron 3 >>>> SerGlnAlaIleAla : 351 !!|||! !:!!||| 63 bp |||:!!||||||!.! heLeuTyrSerLys++ ++SerGluAlaIleGly 117712 : TCCTCTACTCGAAGgt.........................agAGCGAAGCGATCGGT : 117801 352 : ValAlaAlaTyrAsnSerProTrpTyrArgTrpSerAlaSerSerArgThrProIleA : 371 !|||||||||!.. !||||||:!! !!!:: !! !!!!! !|||! !|||! ! ArgAlaAlaTyrThrValProTrpHisTrpTyrProArgCysLeuArgLysProThrA 117802 : CGTGCAGCCTATACGGTGCCTTGGCATTGGTACCCTCGTTGCTTGCGAAAACCAACCA : 117861 372 : laValLeuLeuValArgAlaGlnLysProAlaArgLeuThrAlaGlyLysPheValVa : 390 !:!!|||:!!:!!|||!.!|||||||||!.!||||||||||||||||||.!!|||! snMetLeuMetIleArgGlyGlnLysProValArgLeuThrAlaGlyLysIleValGl 117862 : ACATGCTGATGATCAGAGGTCAGAAACCGGTTCGTCTGACCGCCGGAAAAATCGTCGG : 117918 391 : lLeuSerLeuAspThrPheGlySer >>>> Target Intron 4 >>>> MetI : 400 !|||||||||!!:||||||!.!||| 70 bp |||| yLeuSerLeuGluThrPheAlaSer++ ++MetI 117919 : ACTCTCTCTGGAAACGTTTGCCTCTgt.........................agATGA : 118018 401 : leSerThrSerValSerPhePheThrValValArgSerMetAsn : 414 |||||:!!:!!||||||||||||||||||||||||!!!|||||| leSerSerAlaValSerPhePheThrValValArgThrMetAsn 118019 : TATCGTCGGCCGTGTCCTTCTTCACCGTCGTTCGAACCATGAAT : 118062 vulgar: gi|805809810|ref|XP_003705978.2| 191 414 . KQ414940.1 117136 118062 + 637 M 70 210 G 0 6 M 5 15 G 0 3 M 14 42 S 0 2 5 0 2 I 0 55 3 0 2 S 1 1 M 33 99 5 0 2 I 0 52 3 0 2 M 32 96 5 0 2 I 0 59 3 0 2 M 52 156 5 0 2 I 0 66 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 117137 118062 637 + . gene_id 1 ; sequence gi|805809810|ref|XP_003705978.2| ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 117137 117414 . + . KQ414940.1 exonerate:protein2genome:local exon 117137 117414 . + . insertions 9 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 117415 117416 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 117415 117473 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 117472 117473 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 117474 117573 . + . KQ414940.1 exonerate:protein2genome:local exon 117474 117573 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 117574 117575 . + . intron_id 2 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 117574 117629 . + . intron_id 2 KQ414940.1 exonerate:protein2genome:local splice3 117628 117629 . + . intron_id 1 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 117630 117725 . + . KQ414940.1 exonerate:protein2genome:local exon 117630 117725 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 117726 117727 . + . intron_id 3 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 117726 117788 . + . intron_id 3 KQ414940.1 exonerate:protein2genome:local splice3 117787 117788 . + . intron_id 2 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 117789 117944 . + . KQ414940.1 exonerate:protein2genome:local exon 117789 117944 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 117945 117946 . + . intron_id 4 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 117945 118014 . + . intron_id 4 KQ414940.1 exonerate:protein2genome:local splice3 118013 118014 . + . intron_id 3 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 118015 118062 . + . KQ414940.1 exonerate:protein2genome:local exon 118015 118062 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 117137 118062 637 + . alignment_id 1 ; Query gi|805809810|ref|XP_003705978.2| ; Align 117137 192 210 ; Align 117353 262 15 ; Align 117371 267 42 ; Align 117475 282 99 ; Align 117630 315 96 ; Align 117789 347 156 ; Align 118015 399 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805809810|ref|XP_003705978.2| PREDICTED: putative odorant receptor 92a [Megachile rotundata] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 349 Query range: 22 -> 187 Target range: 116650 -> 117145 23 : LysArgGluThrAlaSerPheAspArgSerIleGlyPheAsnLeuPheLeuLeuArgL : 42 ||| !||| !!.!..!|||||||||! !||||||!!.|||||| !|||||||||| LysAspGluGlyGlyGluPheAspArgLeuIleGlyLeuAsnLeuAspLeuLeuArgL 116651 : AAGGACGAGGGTGGTGAATTCGATAGATTGATCGGCTTGAATCTGGATCTTCTGAGAT : 116708 43 : euAlaGlyValIleSerArgGlyGluArgSerValGluArgArgAlaLeuAlaCysLe : 61 ||..!||||||||| !! !!|||..! !!! !:!!! |||!.!!.!|||||||||:! euCysGlyValIleProCysGlySerGlyPheLeuGlyArgAsnGlyLeuAlaCysVa 116709 : TGTGCGGCGTGATACCGTGCGGTTCAGGATTTCTAGGTAGAAATGGTCTGGCGTGTGT : 116765 62 : uAlaPhePheCysMetSerValTyrSerValSerTyrValTyrGluPheLeuArgArg : 80 !|||||| !|||:!!!!!|||||||||:!!||||||..!|||:!!|||:!!! ! !! lAlaPheGlyCysLeuThrValTyrSerIleSerTyrThrTyrGlnPheValThrCys 116766 : AGCGTTCGGCTGTCTGACCGTATACAGCATCTCGTACACGTATCAATTTGTCACGTGT : 116822 81 : AspGlyArgSerAsnAlaAsnLeuGluThrPheThrLeuIleThrSerPheValGlyV : 100 ! !!.! !:!!.!!! !!!!|||:!!||||||:!!|||! !|||.!!||||||! MetGluAsnLeuAspThrIlePheGluSerPheThrMetIleIleSerIleValGlyG 116823 : ATGGAGAACCTGGACACCATTTTCGAGTCGTTCACGATGATCATCTCGATCGTGGGCG : 116882 101 : alGlnThrArgPheAlaMetLeuLeuLeuHisArgGlyThrCysGlnThrMetLeuTh : 119 !|||.!!||||||:!!!!:|||! !! ! !||||||||||||!:!||||||||| lyGlnAlaArgPheSerIleLeuSerTrpPheArgGlyThrCysArgThrMetLeuGl 116883 : GTCAGGCGCGGTTCTCGATCCTGTCGTGGTTCCGCGGTACCTGTCGAACGATGCTCGA : 116939 120 : rGluCysGluLeuLeuTrpSerArgLeuAsnSerArgGluLysLysValValGlyAsn : 138 !! ||||||!!!|||||||||! !|||!!. !!|||||||||:!!:!!||| !!!:! uAlaCysGluPheLeuTrpSerThrLeuLysProArgGluLysGluIleValArgSer 116940 : AGCCTGCGAGTTCCTCTGGTCGACTCTGAAACCGCGGGAGAAGGAGATCGTTCGAAGT : 116996 139 : TyrAlaArgArgSerAsnArgLeuAlaIleThrTyrValValAsnCysGlnLeuThrI : 158 ||||||!.!!:!!!!!.. !|||.!! ! !|||:!!!.!!:!||| !!!|||| TyrAlaAsnLysThrArgLeuLeuThrArgCysTyrLeuAlaSerCysValPheThrI 116997 : TACGCGAACAAAACGAGATTGCTGACCCGCTGCTACTTGGCCAGCTGCGTCTTCACCA : 117056 159 : lePheAlaTyrValAlaValAlaLeuValThrSerTrpLeuProAspAspSerAsnVa : 177 ||||| !|||! !!.! !!|||||| !! !..!! !! !|||... ..!|||:! lePheIleTyrGlyValPheAlaLeuPheAspGlnSerGlnProSerProGluAsnLe 117057 : TCTTCATTTACGGCGTGTTCGCTCTCTTCGATCAATCGCAACCCTCGCCGGAGAACCT : 117113 178 : lAlaArgAspAlaValAsnAlaSerAsnVal : 187 !:!!..!:!!!.!..! !! !|||!..||| uSerGluAsnGlyThrValAspSerThrVal 117114 : CTCGGAGAACGGCACGGTCGACAGTACGGTT : 117145 vulgar: gi|805809810|ref|XP_003705978.2| 22 187 . KQ414940.1 116650 117145 + 349 M 165 495 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 116651 117145 349 + . gene_id 2 ; sequence gi|805809810|ref|XP_003705978.2| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 116651 117145 . + . KQ414940.1 exonerate:protein2genome:local exon 116651 117145 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 116651 117145 349 + . alignment_id 2 ; Query gi|805809810|ref|XP_003705978.2| ; Align 116651 23 495 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805809810|ref|XP_003705978.2| PREDICTED: putative odorant receptor 92a [Megachile rotundata] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 325 -> 413 Target range: 807323 -> 807587 326 : LeuLeuIleAlaValIleGlnLeuLeuLeuCysAsnTrpProAlaAspValLeuLeuA : 345 :!!:!!! ! !:!!|||||||||! !|||! ! !!:: !!!.!:!!..!||| !: MetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluS 807324 : ATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGT : 807381 346 : laLysSerGlnAlaIleAlaValAlaAlaTyrAsnSerProTrpTyrArgTrpSerAl : 364 !!::!!!!:!!! !|||||| !|||||||||:!!|||! !|||||||||!! !!. erArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGl 807382 : CGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGG : 807438 365 : aSerSerArgThrProIleAlaValLeuLeuValArgAlaGlnLysProAlaArgLeu : 383 ! !:!! !! ! !:!! !:!!:!!:!! !|||!.!.!...!||| !|||:!! yHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIle 807439 : GCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATA : 807495 384 : ThrAlaGlyLysPheValValLeuSerLeuAspThrPheGlySerMetIleSerThrS : 403 |||||||||||||||||| !:!!!:!||| !|||||| !..!!!::!:!.!.!!| ThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaS 807496 : ACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTT : 807555 404 : erValSerPhePheThrValValArgSerMet : 413 ||! !|||!:!.!.:!!|||:!!!:! !||| erGlySerTyrLeuSerValMetLysValMet 807556 : CTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: gi|805809810|ref|XP_003705978.2| 325 413 . KQ414940.1 807323 807587 + 145 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807324 807587 145 + . gene_id 3 ; sequence gi|805809810|ref|XP_003705978.2| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807324 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807324 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807324 807587 145 + . alignment_id 3 ; Query gi|805809810|ref|XP_003705978.2| ; Align 807324 326 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795911|ref|XP_012143140.1| PREDICTED: odorant receptor 49a-like [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 69 -> 155 Target range: 4984 -> 5242 70 : IleTrpIlePheThrIlePhePheLeuSerMetProLeuCysProIlePheLeuAspPheIl : 90 |||! !:!!! !.!! !.!.|||:!!!!!:!!|||!!! !! .!!||||||.!!:! IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLe 4985 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCT : 5045 91 : eLeuProLeuAsnGluThrArgAlaArgGluProLeuPheLysLeuAsnTyrMetValAspM : 111 !:!!|||||||||||||||||||||||| ! !:!!!:! ! ! !!|||.!.|||||| uMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspG 5046 : TATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACG : 5108 112 : etArgAspHisPhePheIleGluTyrPheHisSerAlaPheSerSerIleValValValLeu : 131 ! ! ! :!! !!:!:!: |||! ! !.!! ! !:!!:!!:!!:!!! ! luAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSer 5109 : AGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCT : 5168 132 : IleThrAlaThrPheAspSerLeuTyrMetValIleIleHisTyrGlyCysGlyLeuPheAl : 152 :!! !..!.!!! !|||:!! !|||:!! ! !:!:!!.:!!!.!|||||||||!!.|| ValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAl 5169 : GTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGC : 5231 153 : aLeuCysGly : 155 |:!!...||| aIleAlaGly 5232 : CATTGCAGGG : 5242 vulgar: gi|805795911|ref|XP_012143140.1| 69 155 . LHQN01025741.1 4984 5242 + 122 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4985 5242 122 + . gene_id 1 ; sequence gi|805795911|ref|XP_012143140.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4985 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4985 5242 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4985 5242 122 + . alignment_id 1 ; Query gi|805795911|ref|XP_012143140.1| ; Align 4985 70 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795911|ref|XP_012143140.1| PREDICTED: odorant receptor 49a-like [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 65 -> 155 Target range: 11465 -> 11735 66 : PheArgSerSerIleTrpIlePheThrIlePhePheLeuSerMetProLeuCysProIle : 85 |||! ! !!:! !::|||! !:!!.!!!!.|||:!!..!:!!|||! ! !! ! PheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArg 11466 : TTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGA : 11523 86 : PheLeuAspPheIleLeuProLeuAsnGluThrArgAlaArgGluProLeuPheLysLeu : 105 !!.:!!:!!! ! ! !!! !||| !|||! !::! !:!! !:!!.!. ! LeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuGlnPheValIleProGly 11524 : TTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGA : 11583 106 : AsnTyrMetValAspMetArgAspHisPhePheIleGluTyrPheHisSerAlaPheSer : 125 !!|||.!.|||||| !!!::!!!:!!:! ! .!!|||.!!.!!! !!!! TyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThr 11584 : TATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACA : 11643 126 : SerIleValValValLeuIleThrAlaThrPheAspSerLeuTyrMetValIleIleHis : 145 !:!::!!||||||:!!:!: !..!.!!! !|||!!! !|||||||||:!::!:!!. ValLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGln 11644 : GTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAA : 11703 146 : TyrGlyCysGlyLeuPheAlaLeuCysGly : 155 :!! !|||||||||||||||:!!..!||| HisThrCysGlyLeuPheAlaValAlaGly 11704 : CACACTTGCGGACTGTTCGCCGTGGCCGGG : 11735 vulgar: gi|805795911|ref|XP_012143140.1| 65 155 . LHQN01025741.1 11465 11735 + 104 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11466 11735 104 + . gene_id 2 ; sequence gi|805795911|ref|XP_012143140.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11466 11735 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11466 11735 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11466 11735 104 + . alignment_id 2 ; Query gi|805795911|ref|XP_012143140.1| ; Align 11466 66 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795911|ref|XP_012143140.1| PREDICTED: odorant receptor 49a-like [Megachile rotundata] Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 65 -> 155 Target range: 1257 -> 987 66 : PheArgSerSerIleTrpIlePheThrIlePhePheLeuSerMetProLeuCysProIlePh : 86 |||! ! !!:! !::|||! !:!!.!!!!.|||:!!..!:!!|||! ! !! !.! PheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArgMe 1257 : TTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGAAT : 1197 87 : eLeuAspPheIleLeuProLeuAsnGluThrArgAlaArgGluProLeuPheLysLeuAsnT : 107 .:!!:!!! ! ! !!! !||| !|||! !::! ! ! !:!! ! ! !!| tValAsnSerTyrLysThrGlnAsnIleThrProSerLeuProValValValProGlyTyrT 1196 : GGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGATATT : 1134 108 : yrMetValAspMetArgAspHisPhePheIleGluTyrPheHisSerAlaPheSerSerIle : 127 ||.!.|||||| !!!::!!!:!!:! ! .!!|||.!!.!!! !!!! !:!: yrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeu 1133 : ACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTG : 1074 128 : ValValValLeuIleThrAlaThrPheAspSerLeuTyrMetValIleIleHisTyrGlyCy : 148 :!!||||||:!!:!: !..!.!!! !|||!!! !|||||||||:!::!:!!.:!! !|| IleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCy 1073 : ATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTG : 1011 149 : sGlyLeuPheAlaLeuCysGly : 155 |||||||||||||:!!..!||| sGlyLeuPheAlaValAlaGly 1010 : CGGACTGTTCGCCGTGGCCGGG : 988 vulgar: gi|805795911|ref|XP_012143140.1| 65 155 . LHQN01027734.1 1257 987 - 102 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 988 1257 102 - . gene_id 1 ; sequence gi|805795911|ref|XP_012143140.1| ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 988 1257 . - . LHQN01027734.1 exonerate:protein2genome:local exon 988 1257 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 988 1257 102 - . alignment_id 1 ; Query gi|805795911|ref|XP_012143140.1| ; Align 1258 66 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795911|ref|XP_012143140.1| PREDICTED: odorant receptor 49a-like [Megachile rotundata] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 69 -> 155 Target range: 5678 -> 5420 70 : IleTrpIlePheThrIlePhePheLeuSerMetProLeuCysProIlePheLeuAspPheIl : 90 |||! !:!!! !.!! !.!.|||:!!!!!:!!|||!!! !! .!!||||||.!!:! IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLe 5678 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCT : 5618 91 : eLeuProLeuAsnGluThrArgAlaArgGluProLeuPheLysLeuAsnTyrMetValAspM : 111 !:!!|||||||||||||||||||||||| ! !:!!!:! ! ! !!|||.!.|||||| uMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspG 5617 : TATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACG : 5555 112 : etArgAspHisPhePheIleGluTyrPheHisSerAlaPheSerSerIleValValValLeu : 131 ! ! ! :!! !!:!:!: |||! ! !.!! ! !:!!:!!:!!:!!! ! luAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSer 5554 : AGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCT : 5495 132 : IleThrAlaThrPheAspSerLeuTyrMetValIleIleHisTyrGlyCysGlyLeuPheAl : 152 :!! !..!.!!! !|||:!! !|||:!! ! !:!:!!.:!!!.!|||||||||!!.|| ValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAl 5494 : GTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGC : 5432 153 : aLeuCysGly : 155 |:!!...||| aIleAlaGly 5431 : CATTGCAGGG : 5421 vulgar: gi|805795911|ref|XP_012143140.1| 69 155 . LHQN01028732.1 5678 5420 - 120 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5678 120 - . gene_id 1 ; sequence gi|805795911|ref|XP_012143140.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5678 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5678 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5678 120 - . alignment_id 1 ; Query gi|805795911|ref|XP_012143140.1| ; Align 5679 70 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795911|ref|XP_012143140.1| PREDICTED: odorant receptor 49a-like [Megachile rotundata] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 266 -> 324 Target range: 4475 -> 4224 267 : TyrSerSerLysTrpTyrGlnThrProValLysTyrGlnArgThrIleLeuThrMetGlnIl : 287 |||..!|||! !||||||.!.:!! !! !||| ||| ! ! !:!! ! ! ! TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeuAr 4475 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTACG : 4415 288 : eArgCysSerLysAlaCysLysLeuThrAlaGlyGlyPheTyrGluMetAsnMetGluAsnP : 308 !!! !! !!!. !! ! !|||||||||||||||||| !:!!|||:!::!!!.!| gSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLysThrP 4414 : GAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAGACCT : 4352 309 : heGlyAla >>>> Target Intron 1 >>>> IleIleLysThrSerValSerTyrP : 319 ||..!! ! 77 bp |||||||||:!!||||||||||||! heSerGlu++ ++IleIleLysSerSerValSerTyrT 4351 : TCTCAGAGgt.........................agATTATAAAATCATCCGTGTCTTACT : 4242 320 : heThrValLeuLeuSer : 324 :!||||||:!!! !||| yrThrValMetGlnSer 4241 : ATACGGTGATGCAATCG : 4225 vulgar: gi|805795911|ref|XP_012143140.1| 266 324 . LHQN01028732.1 4475 4224 - 104 M 44 132 5 0 2 I 0 73 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 4225 4475 104 - . gene_id 2 ; sequence gi|805795911|ref|XP_012143140.1| ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 4344 4475 . - . LHQN01028732.1 exonerate:protein2genome:local exon 4344 4475 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 4342 4343 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 4267 4343 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 4267 4268 . - . intron_id 0 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 4225 4266 . - . LHQN01028732.1 exonerate:protein2genome:local exon 4225 4266 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 4225 4475 104 - . alignment_id 2 ; Query gi|805795911|ref|XP_012143140.1| ; Align 4476 267 132 ; Align 4267 311 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793979|ref|XP_012142615.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: LHQN01036086.1 Habropoda laboriosa contig36086, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 183 -> 245 Target range: 6 -> 192 184 : ArgArgLeuGluLeuGluAsnIleLeuAlaAspAlaGluArgHisPheTrpHisTrpAsnTyrA : 205 !.!|||:!!|||!!! ! ...:!!:!! ! !.!!:!!..! ! |||||||||!::||||||| HisArgIleGluPheTyrGlyLeuIleArgPheThrGlnGluLysPheTrpHisPheAsnTyrA 7 : CACAGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAGAGAAATTCTGGCATTTCAACTATA : 70 206 : snSerGluGluGlnLeuLeuPheSerGluCysArgLeuIleCysLysTyrPheIleMetPheVa : 226 |||||..!|||:!!|||:!!!!.|||||||||!:! !||||||! !||||||:!: ! ! snSerArgGluLysLeuIleLeuSerGluCysLysLysIleCysThrValPheIleValAlaPh 71 : ATTCACGGGAGAAGTTAATTTTATCCGAGTGCAAGAAGATATGTACCGTTTTCATCGTTGCCTT : 133 227 : lLeuSerIleProProAlaSerLeuPheGlyTyrValIleThrProIleValSerAsn : 245 ! !! ! ! !!! !!.!!!!! ! !|||||||||:!:|||||||||:!!...||| eSerPheCysThrGlnGlyThrCysAlaGlyTyrValValThrProIleLeuGlyAsn 134 : CAGCTTCTGTACACAGGGCACGTGTGCTGGTTACGTAGTGACACCTATTTTAggtaat : 192 vulgar: gi|805793979|ref|XP_012142615.1| 183 245 . LHQN01036086.1 6 192 + 143 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01036086.1 exonerate:protein2genome:local gene 7 192 143 + . gene_id 1 ; sequence gi|805793979|ref|XP_012142615.1| ; gene_orientation . LHQN01036086.1 exonerate:protein2genome:local cds 7 192 . + . LHQN01036086.1 exonerate:protein2genome:local exon 7 192 . + . insertions 0 ; deletions 0 LHQN01036086.1 exonerate:protein2genome:local similarity 7 192 143 + . alignment_id 1 ; Query gi|805793979|ref|XP_012142615.1| ; Align 7 184 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793979|ref|XP_012142615.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: LHQN01036086.1 Habropoda laboriosa contig36086, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 64 -> 126 Target range: 6 -> 192 65 : ArgArgLeuGluLeuAlaAspValValValTyrAlaGluArgHisPheTrpHisTyrAsnTyrS : 86 !.!|||:!!|||!!! !! :!!:!! !!:!.!!:!!..! ! |||||||||!:!||||||! HisArgIleGluPheTyrGlyLeuIleArgPheThrGlnGluLysPheTrpHisPheAsnTyrA 7 : CACAGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAGAGAAATTCTGGCATTTCAACTATA : 70 87 : erPheGluGluGlnLeuIlePheAlaLysCysGlnArgPheCysLysLeuTrpIleIlePheVa : 107 :!! ..!|||:!!||||||!!.:!!:!!|||:!!!:!.!.|||! :!!!::|||:!! ! ! snSerArgGluLysLeuIleLeuSerGluCysLysLysIleCysThrValPheIleValAlaPh 71 : ATTCACGGGAGAAGTTAATTTTATCCGAGTGCAAGAAGATATGTACCGTTTTCATCGTTGCCTT : 133 108 : lPheCysIleLeuProAlaSerIleSerGlyTyrValThrThrProIleValTyrAsn : 126 ! !! ! ! !! !!.!!!! !:!!|||||||||..!|||||||||:!! ||| eSerPheCysThrGlnGlyThrCysAlaGlyTyrValValThrProIleLeuGlyAsn 134 : CAGCTTCTGTACACAGGGCACGTGTGCTGGTTACGTAGTGACACCTATTTTAggtaat : 192 vulgar: gi|805793979|ref|XP_012142615.1| 64 126 . LHQN01036086.1 6 192 + 127 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01036086.1 exonerate:protein2genome:local gene 7 192 127 + . gene_id 2 ; sequence gi|805793979|ref|XP_012142615.1| ; gene_orientation . LHQN01036086.1 exonerate:protein2genome:local cds 7 192 . + . LHQN01036086.1 exonerate:protein2genome:local exon 7 192 . + . insertions 0 ; deletions 0 LHQN01036086.1 exonerate:protein2genome:local similarity 7 192 127 + . alignment_id 2 ; Query gi|805793979|ref|XP_012142615.1| ; Align 7 65 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793982|ref|XP_012142616.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: LHQN01036086.1 Habropoda laboriosa contig36086, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 11 -> 70 Target range: 6 -> 183 12 : ArgArgValGlnIleAlaLysIleLeuValTyrAlaGlnGlnHisPheTrpAsnAsnAspTyrA : 33 !.!|||:!!:!!.!! ! !:!!:!! !!:!.!!|||:!! ! ||||||:!! !:!!|||| HisArgIleGluPheTyrGlyLeuIleArgPheThrGlnGluLysPheTrpHisPheAsnTyrA 7 : CACAGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAGAGAAATTCTGGCATTTCAACTATA : 70 34 : snProGlnGluArgHisIlePheLysMetCysValLysTyrSerThrTrpPheValIlePheVa : 54 || !!!:!|||!:! |||!!.... !||| !||| !!!||| |||:!!:!! ! ! snSerArgGluLysLeuIleLeuSerGluCysLysLysIleCysThrValPheIleValAlaPh 71 : ATTCACGGGAGAAGTTAATTTTATCCGAGTGCAAGAAGATATGTACCGTTTTCATCGTTGCCTT : 133 55 : lPheSerValProSerThrSerLeuThrGlyTyrValIleThrProIle : 70 ! !! ! ! !!..! !!!!! !.!!|||||||||:!:||||||||| eSerPheCysThrGlnGlyThrCysAlaGlyTyrValValThrProIle 134 : CAGCTTCTGTACACAGGGCACGTGTGCTGGTTACGTAGTGACACCTATT : 183 vulgar: gi|805793982|ref|XP_012142616.1| 11 70 . LHQN01036086.1 6 183 + 100 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01036086.1 exonerate:protein2genome:local gene 7 183 100 + . gene_id 1 ; sequence gi|805793982|ref|XP_012142616.1| ; gene_orientation . LHQN01036086.1 exonerate:protein2genome:local cds 7 183 . + . LHQN01036086.1 exonerate:protein2genome:local exon 7 183 . + . insertions 0 ; deletions 0 LHQN01036086.1 exonerate:protein2genome:local similarity 7 183 100 + . alignment_id 1 ; Query gi|805793982|ref|XP_012142616.1| ; Align 7 12 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793965|ref|XP_012142612.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: LHQN01036086.1 Habropoda laboriosa contig36086, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 2 -> 51 Target range: 45 -> 192 3 : ArgAsnPhePheHisAlaAsnTyrAspAspTyrGluThrLeuValLeuIleAsnCysLysArgL : 24 ..!!!.|||!::||| !||||||:!!... |||! !|||:!!||| !.!.||||||!:!! GluLysPheTrpHisPheAsnTyrAsnSerArgGluLysLeuIleLeuSerGluCysLysLysI 46 : GAGAAATTCTGGCATTTCAACTATAATTCACGGGAGAAGTTAATTTTATCCGAGTGCAAGAAGA : 109 25 : ysCysSerPhePheAlaCysThrPheValCysPheThrGluLeuThrIleIleSerTyrIlePh : 45 !|||!!! !!||| ! !.!!||| !! !! !|||:!! !||| ! !.!!|||:!! ! leCysThrValPheIleValAlaPheSerPheCysThrGlnGlyThrCysAlaGlyTyrValVa 110 : TATGTACCGTTTTCATCGTTGCCTTCAGCTTCTGTACACAGGGCACGTGTGCTGGTTACGTAGT : 172 46 : eThrProLeuIleGlyAsn : 51 ||||||:!!:!!|||||| lThrProIleLeuGlyAsn 173 : GACACCTATTTTAggtaat : 192 vulgar: gi|805793965|ref|XP_012142612.1| 2 51 . LHQN01036086.1 45 192 + 107 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01036086.1 exonerate:protein2genome:local gene 46 192 107 + . gene_id 1 ; sequence gi|805793965|ref|XP_012142612.1| ; gene_orientation . LHQN01036086.1 exonerate:protein2genome:local cds 46 192 . + . LHQN01036086.1 exonerate:protein2genome:local exon 46 192 . + . insertions 0 ; deletions 0 LHQN01036086.1 exonerate:protein2genome:local similarity 46 192 107 + . alignment_id 1 ; Query gi|805793965|ref|XP_012142612.1| ; Align 46 3 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793961|ref|XP_012142611.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: LHQN01040768.1 Habropoda laboriosa contig40768, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 268 -> 305 Target range: 117 -> 228 269 : LeuThrThrValCysGlnLeuIleMetPheSerTyrSerCysAspCysIleIleArgGluSerV : 290 :!!||| !||| !!|||||| ||||||!!!||||||||||||||||||! !! !||||||: MetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerL 118 : ATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCC : 181 291 : alAsnLeuAlaThrAlaAlaPheSerGlyProTrpLeuLeuLeuPro : 305 !!|||:!!||| !:!!!.!!:!:!!|||||||||:!! !|||||| euAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuPro 182 : TGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCA : 228 vulgar: gi|805793961|ref|XP_012142611.1| 268 305 . LHQN01040768.1 117 228 + 123 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01040768.1 exonerate:protein2genome:local gene 118 228 123 + . gene_id 1 ; sequence gi|805793961|ref|XP_012142611.1| ; gene_orientation . LHQN01040768.1 exonerate:protein2genome:local cds 118 228 . + . LHQN01040768.1 exonerate:protein2genome:local exon 118 228 . + . insertions 0 ; deletions 0 LHQN01040768.1 exonerate:protein2genome:local similarity 118 228 123 + . alignment_id 1 ; Query gi|805793961|ref|XP_012142611.1| ; Align 118 269 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793961|ref|XP_012142611.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: LHQN01044749.1 Habropoda laboriosa contig44749, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 260 -> 305 Target range: 136 -> 1 261 : LysValIlePhePhePheHisLeuLeuThrThrValCysGlnLeuIleMetPheSerTyrSerC : 282 :::||| !!!. ! ! !|||:!!||| !||| !!|||||| ||||||!!!||||||| ArgValAlaLeuAlaCysPheLeuMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerC 136 : CGCGTTGCTTTGGCGTGCTTCTTGATGACGGGCGTGAGTCAACTATGGATGTTCACGTATAGTT : 73 283 : ysAspCysIleIleArgGluSerValAsnLeuAlaThrAlaAlaPheSerGlyProTrpLeuLe : 303 ||||||||:!!! !! !||||||:!!|||:!!||| !:!!!.!!:!:!!|||||||||:!! ysAspCysLeuThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAs 72 : GCGATTGCCTAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAA : 10 304 : uLeuPro : 305 !|||||| nLeuPro 9 : TTTACCA : 2 vulgar: gi|805793961|ref|XP_012142611.1| 260 305 . LHQN01044749.1 136 1 - 125 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01044749.1 exonerate:protein2genome:local gene 2 136 125 - . gene_id 1 ; sequence gi|805793961|ref|XP_012142611.1| ; gene_orientation . LHQN01044749.1 exonerate:protein2genome:local cds 2 136 . - . LHQN01044749.1 exonerate:protein2genome:local exon 2 136 . - . insertions 0 ; deletions 0 LHQN01044749.1 exonerate:protein2genome:local similarity 2 136 125 - . alignment_id 1 ; Query gi|805793961|ref|XP_012142611.1| ; Align 137 261 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793965|ref|XP_012142612.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 112 -> 148 Target range: 312 -> 420 113 : GlnThrLeuSerLeuCysThrIleGlyPheAlaTyrLeuCysIleAspAsnMetLeuCysIleI : 134 |||.!!||||||:!!! ! !:!!..! ! ..!|||||||||...||||||:::... |||: GlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePhePheIleM 313 : CAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttttcatta : 376 135 : leAsnLeuHisLeuAlaGlyGlnPheArgIleLeuGlnTyrArg : 148 :: !||||||:!!|||||||||||||||||||||||||||||| etCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 377 : tgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: gi|805793965|ref|XP_012142612.1| 112 148 . LHQN01049471.1 312 420 + 110 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 313 420 110 + . gene_id 1 ; sequence gi|805793965|ref|XP_012142612.1| ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 313 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 313 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 313 420 110 + . alignment_id 1 ; Query gi|805793965|ref|XP_012142612.1| ; Align 313 113 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793961|ref|XP_012142611.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 139 -> 177 Target range: 306 -> 420 140 : IleThrGlnValLeuAlaLeuCysProValGlyPheSerTyrPheSerLeuAspAsnValLeuC : 161 ::!||||||!.!|||:!!:!!! !! !|||..! ! !!!|||.!!!!!!..||||||:::... LeuThrGlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePheP 307 : ctCACGCAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttt : 370 162 : ysIleIleAsnLeuHisIleAlaGlyGlnPheArgIleLeuGlnTyrArg : 177 |||::: !||||||:!:|||||||||||||||||||||||||||||| heIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 371 : tcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: gi|805793961|ref|XP_012142611.1| 139 177 . LHQN01049471.1 306 420 + 104 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 307 420 104 + . gene_id 1 ; sequence gi|805793961|ref|XP_012142611.1| ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 307 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 307 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 307 420 104 + . alignment_id 1 ; Query gi|805793961|ref|XP_012142611.1| ; Align 307 140 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795879|ref|XP_012143129.1| PREDICTED: odorant receptor 45a [Megachile rotundata] Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 336 Query range: 188 -> 348 Target range: 1345 -> 248 189 : AspSerLeuPheSerGlyLeuLeuValAsnIleTyrCysGlnPheGluLeuLeuGluTyrAr : 209 |||!:!||||||||||||||||||:!!:!!||||||||||||||||||:!!|||:!!:!!|| AspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisAr 1345 : GACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCG : 1285 210 : gLeu{Ly} >>>> Target Intron 1 >>>> {s}AsnValGluLysPheAlaThrA : 219 ||||{||} 382 bp {|}|||! ! !:!|||||| ! gLeu{Ly}+- -+{s}AsnAspPheArgPheAlaGluI 1284 : TCTG{AA}ga.........................tg{G}AATGATTTCAGATTCGCTGAAA : 873 220 : laValAsnGluValPheThrAlaIleIleSerIleGlnPheIleValAsnThrPheAlaLeu : 239 !:!!|||! ! !|||!:! !! !!::!!! ||||||:!:|||!.!|||.!..!!:!! leIleAsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThrMet 872 : TTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACAATG : 813 240 : CysPheAsnHisTyrArgLeuSerGlnLeuGluPheGlyAlaLysPheGlyGluAlaAlaAl : 260 |||||||||! !!:!||||||!!!||| !:!! ! !:!!:!! !! !! ! ! ! ! CysPheAsnLeuPheArgLeuThrGlnThrLysValTyrSerGlnValLeuAlaLeuIlePr 812 : TGCTTCAACCTCTTTCGACTGACACAGACCAAGGTGTATTCGCAAGTTTTAGCATTGATACC : 750 261 : aPheMetPheCysValLeuAlaGlnIlePheTyrTyrCysTrpTyrGlyAsnGluValLysL : 281 !|||||| !! !!|||!!!|||||||||||||||! !||||||||||||||||||..!|||: oPheMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLysV 749 : GTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAG : 687 282 : euLys >>>> Target Intron 2 >>>> SerLeuThrIleValAspValAlaLeuA : 292 !!||| 74 bp |||||| !||| !|||..!!.!!!!! alLys++ ++SerLeuGluIleCysAspThrValPheG 686 : TGAAGgt.........................agAGCCTTGAAATTTGCGACACAGTATTCG : 580 293 : spSerThrLeuMetSerLeuAspAsnSerThrLysLysMetPheLeuThrIleThrMetArg : 312 !:|||!.!! !! !:!!|||..!.!.||||||||||||! .!!|||||||||! !:!:||| luSerAsnTrpThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArg 579 : AAAGCAACTGGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGC : 520 313 : AlaMetGluProIleGlnPheThrSerIleHisIleValSerMetAsnLeuGluSerPheIl : 333 :!!:!!:!!||||||:!!||||||.!! ! !:!! !! !!:!:|||||||||||||||! SerLeuLysProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSerPheLy 519 : TCGTTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTTTCCCGTAAATTTGGAGTCTTTTAA : 457 334 : eThr >>>> Target Intron 3 >>>> LeuValLysThrSerTyrSerAlaTyrTh : 344 !!:! 161 bp |||||||||||||||||||||!.!!:!!. sSer++ ++LeuValLysThrSerTyrSerValPheAs 456 : AAGTgt.........................agTTGGTGAAAACTTCCTATTCGGTATTCAA : 263 345 : rMetLeuGlnGln : 348 !:!::!!|||||| nValIleGlnGln 262 : CGTAATCCAGCAA : 249 vulgar: gi|805795879|ref|XP_012143129.1| 188 348 . LHQN01050085.1 1345 248 - 336 M 22 66 S 0 2 5 0 2 I 0 378 3 0 2 S 1 1 M 71 213 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 157 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 249 1345 336 - . gene_id 1 ; sequence gi|805795879|ref|XP_012143129.1| ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 1278 1345 . - . LHQN01050085.1 exonerate:protein2genome:local exon 1278 1345 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 1276 1277 . - . intron_id 1 ; splice_site "GA" LHQN01050085.1 exonerate:protein2genome:local intron 896 1277 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 896 897 . - . intron_id 0 ; splice_site "TG" LHQN01050085.1 exonerate:protein2genome:local cds 682 895 . - . LHQN01050085.1 exonerate:protein2genome:local exon 682 895 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 680 681 . - . intron_id 2 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 608 681 . - . intron_id 2 LHQN01050085.1 exonerate:protein2genome:local splice3 608 609 . - . intron_id 1 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 452 607 . - . LHQN01050085.1 exonerate:protein2genome:local exon 452 607 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 450 451 . - . intron_id 3 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 291 451 . - . intron_id 3 LHQN01050085.1 exonerate:protein2genome:local splice3 291 292 . - . intron_id 2 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 249 290 . - . LHQN01050085.1 exonerate:protein2genome:local exon 249 290 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 249 1345 336 - . alignment_id 1 ; Query gi|805795879|ref|XP_012143129.1| ; Align 1346 189 66 ; Align 895 212 213 ; Align 608 283 156 ; Align 291 335 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795339|ref|XP_012142988.1| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 147 Query range: 0 -> 70 Target range: 873 -> 663 1 : MetValGlnGluLysPheGlnIleIleMetGlyIleGlnLeuAlaSerSerThrLeuValValC : 22 !!::!!.!.! !||||||...|||! |||!.!! |||!!! ! !!!!|||:!!..!:!!| IleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThrMetC 873 : ATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACAATGT : 810 23 : ysPheIleLeuTyrLysLeuThrAsnThrProMetAsnSerThrTyrLeuGlnPheValLeuTy : 43 |||||! !|||!:!::!||||||.!.||| !:!! !!||| ! !||| !!!.:!!! !!: ysPheAsnLeuPheArgLeuThrGlnThrLysValTyrSerGlnValLeuAlaLeuIleProPh 809 : GCTTCAACCTCTTTCGACTGACACAGACCAAGGTGTATTCGCAAGTTTTAGCATTGATACCGTT : 747 44 : rMetAlaCysMetMetSerGlnIleTyrPheTyrCysTrpTyrGlyAsnGluLeuLysLeuLys : 64 !|||!.! !!:!!.!.:!!||||||!:!!:!! !|||||||||||||||||| !|||:!!||| eMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys 746 : CATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG : 684 65 : SerValGluValValAsp : 70 ! !!!: !..!||| ValArgAspGlnThrAsp 683 : GTACGTGATCAAACAGAC : 664 vulgar: gi|805795339|ref|XP_012142988.1| 0 70 . LHQN01050085.1 873 663 - 147 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 664 873 147 - . gene_id 1 ; sequence gi|805795339|ref|XP_012142988.1| ; gene_orientation . LHQN01050085.1 exonerate:protein2genome:local cds 664 873 . - . LHQN01050085.1 exonerate:protein2genome:local exon 664 873 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 664 873 147 - . alignment_id 1 ; Query gi|805795339|ref|XP_012142988.1| ; Align 874 1 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795881|ref|XP_012143130.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 346 Query range: 152 -> 332 Target range: 1345 -> 245 153 : AspSerLeuIleTrpGlyLeuLeuIleHisSerCysCysGlnLeuGluIleLeuGluAlaAr : 173 |||!:!|||.!! ! |||||||||||||||! !! !||||||!!!|||||||||:!! !|| AspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisAr 1345 : GACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCG : 1285 174 : gLeuLysAlaIleLysArgAspAspAspGlnSerAlaLysSerSerAlaArgTyrHisAsnA : 194 |||||||::!||||||! !||| !!: ! |||||||||..!!!!||| !:!!||| !!| gLeuLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrA 1284 : TCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATC : 1222 195 : rgValTyr{Ar} >>>> Target Intron 1 >>>> {g}TyrAlaLysMetIleAsn : 203 ||:!!|||{!:} 328 bp {!}!:!|||:!!!!:|||||| rgIleTyr{Ly}++ ++{s}PheAlaGluIleIleAsn 1221 : GCATATAC{AA}gt.........................ag{A}TTCGCTGAAATTATAAAC : 867 204 : GlnGluPheLysMetIleIlePheValGlnPheThrAlaSerThrLeuValValCysPheSe : 224 !:!!|||!..!!:! !!: !..!|||||| !!.!!!!|||:!!..!:!!||||||!: AlaLysPheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThrMetCysPheAs 866 : GCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACAATGTGCTTCAA : 804 225 : rLeuTyrIleIleAlaThrAlaLysAspMetAsnAspArgLeuLeuValIleAlaValTyrG : 245 !|||!:! !:!:.!! !.!!||| :!! !!...!:!:!!|||!.!:!: ! !!:! nLeuPheArgLeuThrGlnThrLys---ValTyrSerGlnValLeuAlaLeuIleProPheM 803 : CCTCTTTCGACTGACACAGACCAAG---GTGTATTCGCAAGTTTTAGCATTGATACCGTTCA : 744 246 : luSerCysMetLeuGlyGlnIlePhePheTyrCysTrpTyrGlyAsnGluValLysLeuLys : 265 ! ! !!:!!!!!!.!|||||||||!:!! !||||||||||||||||||..!|||:!!||| etValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys 743 : TGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG : 684 266 : >>>> Target Intron 2 >>>> SerValGlnLeuSerAspValIlePheGlyThr : 276 74 bp |||:!!:!!:!!!!!|||..!:!!|||! !!:! ++ ++SerLeuGluIleCysAspThrValPheGluSer 683 : gt.........................agAGCCTTGAAATTTGCGACACAGTATTCGAAAGC : 577 277 : AspTrpMetGlnPheSerArgAspThrLysLysIleLeuSerValIleMetArgArgAlaTh : 297 :!!|||! ! !.!.|||!:!..!|||||||||! !||| !..!|||||| !|||:!! AsnTrpThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgSerLe 576 : AACTGGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTT : 514 298 : rMetSerIleGluPheThrSerValTyrIleValThrMetAsnLeuGluSerPheValSer : 318 !! ! !!||||||||||||.!!!.!!:!:!! !! !!:!:||||||||||||||| !||| uLysProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSerPheLysSer+ 513 : GAAGCCAATAGAATTCACCGGCGCTTTCGTTTTTCCCGTAAATTTGGAGTCTTTTAAAAGTg : 451 319 : >>>> Target Intron 3 >>>> LeuLeuLysThrSerTyrSerAlaTyrAsnMetL : 329 161 bp |||:!!|||||||||||||||!.!!:!|||:!:: + ++LeuValLysThrSerTyrSerValPheAsnValI 450 : t.........................agTTGGTGAAAACTTCCTATTCGGTATTCAACGTAA : 257 330 : euGlnSerSer : 332 !!|||..!!!! leGlnGlnThr 256 : TCCAGCAAACG : 246 vulgar: gi|805795881|ref|XP_012143130.1| 152 332 . LHQN01050085.1 1345 245 - 346 M 44 132 S 0 2 5 0 2 I 0 324 3 0 2 S 1 1 M 35 105 G 1 0 M 32 96 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 246 1345 346 - . gene_id 1 ; sequence gi|805795881|ref|XP_012143130.1| ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 1212 1345 . - . LHQN01050085.1 exonerate:protein2genome:local exon 1212 1345 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 1210 1211 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 884 1211 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 884 885 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 682 883 . - . LHQN01050085.1 exonerate:protein2genome:local exon 682 883 . - . insertions 0 ; deletions 1 LHQN01050085.1 exonerate:protein2genome:local splice5 680 681 . - . intron_id 2 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 608 681 . - . intron_id 2 LHQN01050085.1 exonerate:protein2genome:local splice3 608 609 . - . intron_id 1 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 452 607 . - . LHQN01050085.1 exonerate:protein2genome:local exon 452 607 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 450 451 . - . intron_id 3 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 291 451 . - . intron_id 3 LHQN01050085.1 exonerate:protein2genome:local splice3 291 292 . - . intron_id 2 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 246 290 . - . LHQN01050085.1 exonerate:protein2genome:local exon 246 290 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 246 1345 346 - . alignment_id 1 ; Query gi|805795881|ref|XP_012143130.1| ; Align 1346 153 132 ; Align 883 198 105 ; Align 778 234 96 ; Align 608 266 156 ; Align 291 318 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795867|ref|XP_012143125.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 140 Query range: 191 -> 235 Target range: 1339 -> 1207 192 : LeuTyrThrGlyLeuIleLeuHisValCysCysGlnPheGluIleLeuGluHisArgPheLy : 212 |||!:!!:!||||||:!::!!|||:!!! !||||||||||||||||||:!!||||||.!.|| LeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLy 1339 : CTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAA : 1279 213 : sMetLeuAsnThrAsnProValTyrThrValAsnGlnCysAlaSerHisHisHisLeuIleT : 233 |! :!!!!. !!:!! !! !|||:!!!.!!!.|||||||||! !||||||:!!! !|||| sSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrArgIleT 1278 : GAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGCATAT : 1216 234 : yrLysTyr : 235 |||||!:! yrLysPhe 1215 : ACAAGTTT : 1208 vulgar: gi|805795867|ref|XP_012143125.1| 191 235 . LHQN01050085.1 1339 1207 - 140 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 1208 1339 140 - . gene_id 1 ; sequence gi|805795867|ref|XP_012143125.1| ; gene_orientation . LHQN01050085.1 exonerate:protein2genome:local cds 1208 1339 . - . LHQN01050085.1 exonerate:protein2genome:local exon 1208 1339 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 1208 1339 140 - . alignment_id 1 ; Query gi|805795867|ref|XP_012143125.1| ; Align 1340 192 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795867|ref|XP_012143125.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 133 Query range: 301 -> 368 Target range: 607 -> 245 302 : SerAlaGluPheProAspGluIlePheSerSerGlyTrpProSerTrpAsnAspSerSerLysL : 323 ||| !|||.!! !||| !:!!|||..!|||..!||| !!:!! !!:!.!.|||!!!|||| SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSerThrLysL 607 : AGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAGCACCAAAA : 544 324 : ysValLeuLeuMetValIleArgArgSerLysThrProIleGluPheThrSerMetHisIleVa : 344 ||..!||||||! !:!!!!: !|||||| !! !|||||||||||||||.!! !:!! ! ysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheThrGlyAlaPheValPh 543 : AGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTT : 481 345 : lThrLeuSerLeuGluSerPheMetSer >>>> Target Intron 1 >>>> LeuLeuL : 356 ! !!:!!!:!||||||||||||! ||| 161 bp |||:!!| eProValAsnLeuGluSerPheLysSer++ ++LeuValL 480 : TCCCGTAAATTTGGAGTCTTTTAAAAGTgt.........................agTTGGTGA : 284 357 : ysThrSerTyrSerAlaPheAsnLeuMetSerThrThr : 368 ||||||||||||||!.!||||||:!!!!:..! !||| ysThrSerTyrSerValPheAsnValIleGlnGlnThr 283 : AAACTTCCTATTCGGTATTCAACGTAATCCAGCAAACG : 246 vulgar: gi|805795867|ref|XP_012143125.1| 301 368 . LHQN01050085.1 607 245 - 133 M 52 156 5 0 2 I 0 157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 246 607 133 - . gene_id 2 ; sequence gi|805795867|ref|XP_012143125.1| ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 452 607 . - . LHQN01050085.1 exonerate:protein2genome:local exon 452 607 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 450 451 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 291 451 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 291 292 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 246 290 . - . LHQN01050085.1 exonerate:protein2genome:local exon 246 290 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 246 607 133 - . alignment_id 2 ; Query gi|805795867|ref|XP_012143125.1| ; Align 608 302 156 ; Align 291 354 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795873|ref|XP_012143127.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 147 Query range: 260 -> 327 Target range: 607 -> 245 261 : SerIleGluPheAlaAspGluIlePheTyrSerAspTrpValSerTrpGlyAsnGluAlaLysL : 282 |||:!!|||.!!..!||| !:!!||| ! |||:!!|||..!:!! !.!!.!.....!!|||| SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSerThrLysL 607 : AGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAGCACCAAAA : 544 283 : ysValPheLeuMetValLeuThrArgSerAlaGlnProIleGluPheSerCysIleSerIleLe : 303 ||..!.!!|||! !:!!:!! !|||||| !:!!||||||||||||!!! !! !! !:!!!! ysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheThrGlyAlaPheValPh 543 : AGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTT : 481 304 : uProIleAsnLeuGluSerPheMetLys >>>> Target Intron 1 >>>> LeuLeuL : 315 !|||:!!|||||||||||||||! !.. 161 bp |||:!!| eProValAsnLeuGluSerPheLysSer++ ++LeuValL 480 : TCCCGTAAATTTGGAGTCTTTTAAAAGTgt.........................agTTGGTGA : 284 316 : ysThrSerTyrSerAlaPheAsnIleMetGlnGlnSer : 327 ||||||||||||||!.!||||||:!!!!:||||||!!! ysThrSerTyrSerValPheAsnValIleGlnGlnThr 283 : AAACTTCCTATTCGGTATTCAACGTAATCCAGCAAACG : 246 vulgar: gi|805795873|ref|XP_012143127.1| 260 327 . LHQN01050085.1 607 245 - 147 M 52 156 5 0 2 I 0 157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 246 607 147 - . gene_id 1 ; sequence gi|805795873|ref|XP_012143127.1| ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 452 607 . - . LHQN01050085.1 exonerate:protein2genome:local exon 452 607 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 450 451 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 291 451 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 291 292 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 246 290 . - . LHQN01050085.1 exonerate:protein2genome:local exon 246 290 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 246 607 147 - . alignment_id 1 ; Query gi|805795873|ref|XP_012143127.1| ; Align 608 261 156 ; Align 291 313 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795873|ref|XP_012143127.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 133 Query range: 149 -> 197 Target range: 1345 -> 1201 150 : AspCysLeuTyrIleGlyLeuLeuLeuHisIleCysGlyGlnIleLysValLeuGluHisAr : 170 ||| !|||!:!! !|||||||||:!!||||||! ! !!|||.!!:!!:!!|||:!!||||| AspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisAr 1345 : GACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCG : 1285 171 : gPheGlnThrLeuThrGluGluGlyTyrTyrSerLeuAsnGlnCysAlaAlaHisHisTyrA : 191 |.!.:!!!:!:!!! ! !!: !! ! |||||| !!!.||||||||| !|||||||||. gLeuLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrA 1284 : TCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATC : 1222 192 : snIleTyrGlnPheValPhe : 197 .!||||||:!!||||||::: rgIleTyrLysPheValTyr 1221 : GCATATACAAGTTTgtctac : 1202 vulgar: gi|805795873|ref|XP_012143127.1| 149 197 . LHQN01050085.1 1345 1201 - 133 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 1202 1345 133 - . gene_id 2 ; sequence gi|805795873|ref|XP_012143127.1| ; gene_orientation . LHQN01050085.1 exonerate:protein2genome:local cds 1202 1345 . - . LHQN01050085.1 exonerate:protein2genome:local exon 1202 1345 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 1202 1345 133 - . alignment_id 2 ; Query gi|805795873|ref|XP_012143127.1| ; Align 1346 150 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819492|ref|XP_012149880.1| PREDICTED: odorant receptor 67c [Megachile rotundata] Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 223 -> 290 Target range: 824 -> 1194 224 : SerLysSerIleSerTrpAlaAlaTyrAsnSerAsnTrpTyrGlnLeuSerIleArgGluCy : 244 |||:!! !|||.!! .!!||||||.!.! ! !||||||.!.||| !! !! !||| ! SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSe 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAG : 885 245 : sArgAlaLeuLeuLeuLeuIleLeuArgSerGlnArgProMetThrLeuThrIleGlyLysT : 265 !!:! !|||:!!! !:!!|||||||||||||||!:! !.!.|||!..|||...||||||: rGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysP 886 : CCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaat : 948 266 : yrIleAsnLeuSerLeuGluThrPheAlaAsn >>>> Target Intron 1 >>>> M : 276 :: :::||||||||||||!:!|||.!! ! 169 bp ! heSerSerLeuSerLeuGluSerPheThrAla++ ++I 949 : tttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.........................agA : 1150 277 : etLeuLysThrSerAlaSerTyrValSerValLeuTyrAlaMet : 290 !::!!|||..!||||||||||||:!!||||||||| !|||:!! leMetLysValSerAlaSerTyrIleSerValLeuLeuAlaVal 1151 : TCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTG : 1194 vulgar: gi|805819492|ref|XP_012149880.1| 223 290 . LHQN01050112.1 824 1194 + 133 M 52 156 5 0 2 I 0 165 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 1194 133 + . gene_id 1 ; sequence gi|805819492|ref|XP_012149880.1| ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 825 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1194 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1194 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 1194 133 + . alignment_id 1 ; Query gi|805819492|ref|XP_012149880.1| ; Align 825 224 156 ; Align 1150 276 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759258|ref|XP_012151297.1| PREDICTED: odorant receptor 83a-like isoform X1 [Megachile rotundata] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 291 -> 416 Target range: 1306928 -> 1306556 292 : LeuValThrLeuSerLysGluTyrAsnArgLeuPheSerSerSerMetPheValGl : 310 ||| !!:!:!! !!!.!:: |||...||||||::: !! !:!:|||||||| LeuTyrSerValValAsnAspValAsnAsnLeuPheThrProIleValPheValGl 1306928 : TTATACAGCGTGGTGAATGatgtgaataatttatttactccCATCGTTTTCGTACA : 1306874 311 : nMetLeuSerSerThrSerMetIleCysLeuThrGlyPheGlnAlaValValValG : 329 |:!:|||!!!||| !! !:!:|||||||||!:!|||||| |||||| !!! !. nLeuLeuThrSerGlyIleValIleCysLeuSerGlyPhe---AlaValPheAspA 1306873 : ACTTCTTACAAGCGGAATAGTAATTTGTTTAAGTGGATTC---GCGGTTTTCGATA : 1306820 330 : lyGlyGlnSerSerAspIleMetLysPheGlyMetTyrLeuSerAlaAlaValSer : 347 .!! ! !!!!!||||||:!!|||!:!! ! |||||||||:!! ! !! ! snAspAlaArgThrAspIleLeuLysTyrValSerTyrLeuSerSerIleTrpLeu 1306819 : ACGACGCCCGTACCGATATTCTGAAATACGTATCTTATTTGTCCTCGATTTGGTTG : 1306766 348 : GlnLeuLeuTyrIleCysTrpIleGlyAsnGluLeuSerTyrSerSerSerValLe : 366 |||||||||! |||! ! !|||.!. ||| ! ! ..!|||! !! !:! GlnLeuLeuLeuTrpCysLeuProGlyGluIleLeuValGlnGluSerLeuGluIl 1306765 : CAACTTTTGTTATGGTGTTTGCCCGGTGAAATTCTCGTTCAAGAGAGTTTAGAAAT : 1306709 367 : uAspLysSerGlnTrpLeuSerAspTrpHisHisGluHisLeuProSerIleValG : 385 !! ! ! !::|||!:!! :!!.!. ! !|||! ! ! !: eGlyHisValValTyrLeuAsnValProTrpTyrAsnLeuProProIleTyrGlnA 1306708 : AGGACACGTAGTCTACTTAAATGTACCATGGTACAATTTGCCGCCAATTTACCAGA : 1306652 386 : lnValPheThrLeuSerThrMetSerThrArgArgThrLeuThrLeuLysAlaGly : 403 :! !.!! !:!!! !! !:!:!!!.!!!:!!:! !! !!:!:!!! !||| ! rgLysLeuCysMetMetIleLeuArgAlaGlnGlnTyrCysSerIleThrAlaLeu 1306651 : GAAAACTTTGCATGATGATCCTTAGGGCACAACAATATTGCAGCATCACGGCATTA : 1306598 404 : IlePhePheValLeuSerLeuGluThrPheIleAlaIle : 416 ! ||| ..!||||||:!!.!.|||!!.! ::!:!: ThrPheArgThrLeuSerIleHisThrLeuThrSerVal 1306597 : ACGTTTCGAACGTTGTCTATTCACACGTTAACGAGCGTG : 1306557 vulgar: gi|805759258|ref|XP_012151297.1| 291 416 . KQ414608.1 1306928 1306556 - 111 M 32 96 G 1 0 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1306557 1306928 111 - . gene_id 1 ; sequence gi|805759258|ref|XP_012151297.1| ; gene_orientation . KQ414608.1 exonerate:protein2genome:local cds 1306557 1306928 . - . KQ414608.1 exonerate:protein2genome:local exon 1306557 1306928 . - . insertions 0 ; deletions 1 KQ414608.1 exonerate:protein2genome:local similarity 1306557 1306928 111 - . alignment_id 1 ; Query gi|805759258|ref|XP_012151297.1| ; Align 1306929 292 96 ; Align 1306833 325 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805782670|ref|XP_012139624.1| PREDICTED: odorant receptor 13a-like isoform X1 [Megachile rotundata] Target: KQ414615.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold33, whole genome shotgun sequence Model: protein2genome:local Raw score: 1015 Query range: 0 -> 323 Target range: 2575629 -> 2577034 1 : MetLeuThrMetThrLeuAlaValLeuLysSerGlyValTrpMetPheAsnArgLy : 19 :!:||||||!!::!!||||||..!||||||||| !:!!||||||||||||||||| LeuLeuThrIleSerLeuAlaThrLeuLysSerIleIleTrpMetPheAsnArgLy 2575630 : CTACTTACAATTTCCCTTGCTACATTAAAATCAATAATTTGGATgtttaacagaaa : 2575684 20 : sAspLeuGluCysPheIleAsnPheMetLeuThrGlyTyrTrpLysIleValAsnA : 38 | ||| ! !||||||.!.||||||||||||! !||||||:!!||||||!!.. sLysLeuAlaValPheIleGluPheMetLeuThrAspTyrTrpGluIleValLysT 2575685 : aaaattggcGGTTTTCATTGAGTTCATGTTAACAGACTATTGGGAAATAGTTAAAA : 2575741 39 : laAspValPheValTyrLeuGluGluTyrAla{Il} >>>> Target Intron : 49 !!:!!|||! !! !||||||:!!|||||||||{||} 84 bp hrAsnValSerGluTyrLeuGlnGluTyrAla{Il}++ 2575742 : CTAACGTTTCTGAATACCTACAAGAATATGCA{AT}gt.................. : 2575778 50 : 1 >>>> {e}TyrAlaLysAsnValSerArgGlyTyrPheIleSerMetCysAs : 64 {|}||||||||||||:::::::::||||||||||||||||||||||| ++{e}TyrAlaLysAsnIleThrLysGlyTyrPheIleSerMetCysAs 2575779 : .......ag{a}tatgctaaaaatattacaaagggttattttatttcaatgtgtAA : 2575903 65 : nAlaLeuLeuPheTyrSerSerLeuProIleIleGluIleLeuIleSerLysSerG : 83 |||||||||||||!:!!!!|||||||||||||||||||||!!!:!!!!!:!! !| nAlaLeuLeuPhePheCysSerLeuProIleIleGluIlePheValThrGluHisG 2575904 : TGCATTACTATTCTTCTGTAGCTTGCCTATTATCGAAATATTTGTTACTGAACATC : 2575960 84 : lnValSerAsnAsnAsnSerThrIleLysLysPheProPheThrGlyThrSerPro : 101 || !:!::!:!!||| !|||:!:|||!!.|||||||||.!!!.!|||! !||| ln---AsnSerAspAsnLeuThrLeuLysAsnPheProPheAlaAlaThrTyrPro 2575961 : AA---AACTCTGATAATCTTACTCTGAAGAACTTTCCATTTGCTGCAACATATCCT : 2576011 102 : AlaAlaPheHisLysPheProPheTyrGlu >>>> Target Intron 2 >>> : 112 .!....|||:::...||||||||||||||| 68 bp ThrValPheTyrAsnPheProPheTyrGlu++ 2576012 : ACagttttttataactttcctttttacgaggt........................ : 2576046 113 : > MetMetTyrIlePheGlnMetLeuAlaThrAsnIleCysSerLeuIleMetLe : 129 !!: |||:!:! !||| !|||||||||!:!||||||!!!|||!!:!!:|| ++IleAlaTyrValSerGlnAlaLeuAlaThrSerIleCysCysLeuMetIleLe 2576047 : .agATTGCATATGTGTCTCAAGCGCTAGCAACCAGTATTTGTTGTCTAATGATACT : 2576163 130 : uAlaThrAspGlyIleIleAlaIleAlaLeuLeuHisThrCysGlyHisPheAlaV : 148 |||||||||||||:!!||||||! !|||:!!||||||||||||||||||||||||| uAlaThrAspGlyLeuIleAlaThrAlaValLeuHisThrCysGlyHisPheAlaV 2576164 : TGCAACTGATGGTCTAATTGCAACTGCTGTGCTCCATACATGTGGGCATTTTGCAG : 2576220 149 : alLeuLysGlnLysLeuLysAsnLeuAspSerCysIleTyrCys >>>> Targe : 163 ||||||||:::...|||:::...||||||! !||||||||| !! alLeuLysGluAsnLeuArgArgLeuAspLeuCysIleTyrArg++ 2576221 : tacttaaagaaaatttaaggcgACTTGATTTATGCATTTATCGCgt.......... : 2576267 164 : t Intron 3 >>>> IleThrAsnSerGluLysAsnSerThrAsnIleLysThr : 175 67 bp :!:!.!!:!! !|||!!.||||||! !:!!|||!!..!! ++ValAsnSerPheGluAsnAsnSerLysHisIleAsnAla 2576268 : ...............agGTGAATAGTTTTGAAAACAATTCGAAACATATAAACGCG : 2576368 176 : AspLeuTyrAspIleLysIleGlnLeuMetHisThrIleGlnHisHisGlnIleIl : 194 ! ||||||.!.||||||:!!|||:!!! ||| !|||:!!|||||||||:!!:! LysLeuTyrGlnIleLysValGlnIleThrHisLeuIleLysHisHisGlnValVa 2576369 : AAATTATACCAGATAAAAGTTCAAATCACACACTTAATTAAACATCATCAAGTAGT : 2576425 195 : eLeu{Tr} >>>> Target Intron 4 >>>> {p}PheCysAspAsnMetG : 202 !|||{||} 65 bp {|}|||||||||||||||| lLeu{Tr}++ ++{p}PheCysAspAsnMetG 2576426 : CCTt{tg}gt.........................ag{G}TTTTGTGATAAtatgg : 2576514 203 : luLysAsnPheHisLeuMetLeuPheLeuGlnSerMetThrSerSerIleLeuIle : 220 |||||||||||||||||||||||.!!||||||!!!||||||||||||:!!:!!||| luLysAsnPheHisLeuMetLeuLeuLeuGlnThrMetThrSerSerLeuMetIle 2576515 : aaaagaattttcaccTAATGCTCCTTTTACAAACTATGACCAGTAGTCTTATGATT : 2576568 221 : CysPheValGlyPheGlnValSerThr >>>> Target Intron 5 >>>> : 230 ||||||||||||||||||||||||||| 86 bp CysPheValGlyPheGlnValSerThr++ ++ 2576569 : TGTTTCGTCGGATTTCAAGTTTCGACCgt.........................ag : 2576682 231 : AlaLeuSerGluIleSerLysLeuPheLysSerPheAlaHisLeuLeuValAlaLe : 248 .!!|||!!!||| !||||||:::...||| ::!||||||:!!|||...|| ThrLeuThrGluGlnSerLysValIleLysPheAlaSerHisLeuIleValThrLe 2576683 : ACACTAACAGAACAATctaaagtaattaaatttgcttcTCACTTAATCGTGAcgct : 2576738 249 : uPheGlnLeuLeuLeuPheCysPheProGlyAspIleLeuIleArgGln >>>> : 265 ||||||||||||||||||||||||||||||||||!!:|||||||||||| uPheGlnLeuLeuLeuPheCysPheProGlyAspMetLeuIleArgGln++ 2576739 : ttttcaattattactcTTTTGTTTCCCTGGGGATATGCTAATCCGACAGgt..... : 2576791 266 : Target Intron 6 >>>> SerCysAspIleSerThrAlaValPheSerIleL : 276 69 bp |||! !..!||||||||||||!.!!:!||||||: ++SerPheSerIleSerThrAlaAlaTyrSerIleG 2576792 : ....................agAGTTTCAGTATAAGTACAGCTGCATATTCAATAC : 2576891 277 : ysTrpTyrLysLeuProSerLeuIleLysAspGluValTyrMetIleIleLeuArg : 294 !!|||! !:!!||||||!!!!!!:!!||||||||||||! !||||||||||||||| lnTrpCysGlnLeuProThrPheLeuLysAspGluValCysMetIleIleLeuArg 2576892 : AGTGGTGTCAACTGCCAACTTTTCTTAAAGACGAAGTATGCATGATTATACTACGT : 2576945 295 : SerGlnLysProCysSerIleThrAlaGlyLysLeuTyrValMetHisLeuGluAs : 313 ||||||!:! !! !!! !|||||||||||||||:!!|||||||||||||||||||| SerGlnArgSerSerTyrIleThrAlaGlyLysIleTyrValMetHisLeuGluAs 2576946 : TCTCAAAGATCTAGCTACATTACTGCGGGAAAGATATATGTGAtgcatttggaaaa : 2577002 314 : nPheAlaAlaValSerCysIleIleTyrLeu : 323 ||||...||||||... ...:::::: nPheThrAlaValLysIleSerPheHisIle 2577003 : tttcaccgcggtaaaaatttcattccatatt : 2577034 vulgar: gi|805782670|ref|XP_012139624.1| 0 323 . KQ414615.1 2575629 2577034 + 1015 M 48 144 S 0 2 5 0 2 I 0 80 3 0 2 S 1 1 M 34 102 G 1 0 M 27 81 5 0 2 I 0 64 3 0 2 M 51 153 5 0 2 I 0 63 3 0 2 M 33 99 S 0 2 5 0 2 I 0 61 3 0 2 S 1 1 M 33 99 5 0 2 I 0 82 3 0 2 M 35 105 5 0 2 I 0 65 3 0 2 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414615.1 exonerate:protein2genome:local gene 2575630 2577034 1015 + . gene_id 1 ; sequence gi|805782670|ref|XP_012139624.1| ; gene_orientation + KQ414615.1 exonerate:protein2genome:local cds 2575630 2575775 . + . KQ414615.1 exonerate:protein2genome:local exon 2575630 2575775 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2575776 2575777 . + . intron_id 1 ; splice_site "GT" KQ414615.1 exonerate:protein2genome:local intron 2575776 2575859 . + . intron_id 1 KQ414615.1 exonerate:protein2genome:local splice3 2575858 2575859 . + . intron_id 0 ; splice_site "ag" KQ414615.1 exonerate:protein2genome:local cds 2575860 2576043 . + . KQ414615.1 exonerate:protein2genome:local exon 2575860 2576043 . + . insertions 0 ; deletions 1 KQ414615.1 exonerate:protein2genome:local splice5 2576044 2576045 . + . intron_id 2 ; splice_site "gt" KQ414615.1 exonerate:protein2genome:local intron 2576044 2576111 . + . intron_id 2 KQ414615.1 exonerate:protein2genome:local splice3 2576110 2576111 . + . intron_id 1 ; splice_site "AG" KQ414615.1 exonerate:protein2genome:local cds 2576112 2576264 . + . KQ414615.1 exonerate:protein2genome:local exon 2576112 2576264 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2576265 2576266 . + . intron_id 3 ; splice_site "GT" KQ414615.1 exonerate:protein2genome:local intron 2576265 2576331 . + . intron_id 3 KQ414615.1 exonerate:protein2genome:local splice3 2576330 2576331 . + . intron_id 2 ; splice_site "AG" KQ414615.1 exonerate:protein2genome:local cds 2576332 2576432 . + . KQ414615.1 exonerate:protein2genome:local exon 2576332 2576432 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2576433 2576434 . + . intron_id 4 ; splice_site "gt" KQ414615.1 exonerate:protein2genome:local intron 2576433 2576497 . + . intron_id 4 KQ414615.1 exonerate:protein2genome:local splice3 2576496 2576497 . + . intron_id 3 ; splice_site "AG" KQ414615.1 exonerate:protein2genome:local cds 2576498 2576597 . + . KQ414615.1 exonerate:protein2genome:local exon 2576498 2576597 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2576598 2576599 . + . intron_id 5 ; splice_site "GT" KQ414615.1 exonerate:protein2genome:local intron 2576598 2576683 . + . intron_id 5 KQ414615.1 exonerate:protein2genome:local splice3 2576682 2576683 . + . intron_id 4 ; splice_site "AG" KQ414615.1 exonerate:protein2genome:local cds 2576684 2576788 . + . KQ414615.1 exonerate:protein2genome:local exon 2576684 2576788 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2576789 2576790 . + . intron_id 6 ; splice_site "GT" KQ414615.1 exonerate:protein2genome:local intron 2576789 2576857 . + . intron_id 6 KQ414615.1 exonerate:protein2genome:local splice3 2576856 2576857 . + . intron_id 5 ; splice_site "AG" KQ414615.1 exonerate:protein2genome:local cds 2576858 2577034 . + . KQ414615.1 exonerate:protein2genome:local exon 2576858 2577034 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local similarity 2575630 2577034 1015 + . alignment_id 1 ; Query gi|805782670|ref|XP_012139624.1| ; Align 2575630 1 144 ; Align 2575861 50 102 ; Align 2575963 85 81 ; Align 2576112 112 153 ; Align 2576332 163 99 ; Align 2576499 197 99 ; Align 2576684 230 105 ; Align 2576858 265 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759258|ref|XP_012151297.1| PREDICTED: odorant receptor 83a-like isoform X1 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence Model: protein2genome:local Raw score: 645 Query range: 0 -> 233 Target range: 453891 -> 456635 1 : MetAlaArgThrProGlyHisLysTrpMetValAlaPheArgLysLeuIleAsnIleG : 20 |||||| !..!|||||||||:!!|||||| !:!!||||||:!!||||||:!!:!!| MetAlaTyrValProGlyHisGluTrpMetArgSerPheArgGlnLeuIleHisValG 453892 : ATGGCTTATGTGCCTGGCCACGAATGGATGAGATCATTTCGACAGTTGATTCATGTAC : 453949 21 : lnIleAsnTyrLeu{Ly} >>>> Target Intron 1 >>>> {s}TyrSerGl : 28 |||||!:!|||:!!{||} 140 bp {|}|||||||| lnIleSerTyrIle{Ly}++ ++{s}TyrSerGl 453950 : AAATAAGTTACATA{AA}gt.........................ag{A}TACAGTGG : 454113 29 : yLeuTrpValIleAspProGlyHisProTrpLeuSerLysSerAlaTyrLeuValCys : 47 ||||||| |||::: ||| !!! !!!!! !! !! !||||||!!!!.!! ! yLeuTrpLysIleGluSerLysHisSerSerPheMetThrIleAlaTyrPheAlaTyr 454114 : CCTctggaaaattgaatcgaaacACTCGTCGTTTATGACAATCGCTTACTTCGCGTAC : 454170 48 : LysGlyTrpThrLeuSerAlaMetTyrIlePheAlaIleThrLeuPheAlaAspIleC : 67 ||| !|||! !|||! ! !||| !!:!!||||||:!!|||:!!||||||||||||! LysLeuTrpIleLeuIleMetMetAsnValPheAlaValThrIlePheAlaAspIleT 454171 : AAACTATGGATACTCATAATGATGAACGTATTCGCCGTCACTATATTCGCAGACATCT : 454230 68 : ysAspAsnIleAspAsnLeuSerIleThrSerAspAspGlyCysValPheAlaGlyIl : 86 !!!:|||!!:|||||||||||||||! !||||||||||||||| !!.!!|||||||| yrGluAsnMetAspAsnLeuSerIleIleSerAspAspGlyCysPheLeuAlaGlyIl 454231 : ACGAGAACATGGACAACCTATCGATCATTAGCGACGACGGTTGTTTCCTCGCTGGAAT : 454287 87 : eAlaValValIlePheLysThrMetAsnTyrGlnIleArgGlnLysLysIleAlaLeu : 105 | !|||||||||||||||.!!|||||||||||||||!.!||||||...||| eLeuValValIlePheLysAlaMetAsnTyrGlnIleHisGlnLysSerIleIleLys 454288 : ACTCGTCGTGATTTTTAAGGCTATGAATTACCAAATTCATCagaaaagtataattaaa : 454344 106 : PheValAspLysValLeuLysCysSerAspAspLeuCysGluPheSer{A} >>>> : 122 ...:!!||| ! :!!|||!!.|||:!!||||||||||||..!||||||{|} LeuLeuAspAspIleLeuAsnCysAlaAspAspLeuCysArgPheSer{A}++ 454345 : ttgCTCGACGACATATTGAACTGTGCTGATGATCTCTGCAGATTTTCC{A}gt..... : 454398 123 : Target Intron 2 >>>> {sn}GluGluSerIleLysProIleIleAspLysTy : 133 1905 bp {||} |||!!!! !||| !||||||:!!::!|| ++{sn}ThrGluThrAsnLysTyrIleIleAsnArgTy 454399 : ....................ag{AT}ACCGAAACGAATAAATACATCATCAACCGATa : 456333 134 : rArgLeuArgIleThrValThrPheTrpGlyPheSerAlaLeuGlyCysAlaLeuGly : 152 | |||..!|||!::||||||||| !|||||||||!.!|||||| rTyrLysPheAsnLysValValPheTyrGlyPheSerMetLeuGlyCysValLeuGly 456334 : ctataaatttaacaaagtaGTTTTCTACGGGTTCAGCATGTTAGGATGCGTTTTAGGA : 456390 153 : PheLeuLeuLeuPheAlaSerProArgGlnAsnAspLeuProIleArgAlaLysTyrP : 172 .!. !||||||||| !||||||! !||||||! !|||||||||||||||||||||| IleAlaLeuLeuPhePheSerProLeuGlnAsnGlyLeuProIleArgAlaLysTyrP 456391 : ATAGCTCTGCTATTTTTCTCGCCTCTGCAGAACGGTTTGCCCATCAGAGCAAAGTATC : 456450 173 : roPheAsnThrThrThrProGlyTrpHisGluLeuSerPhePheIleGluThrCysAl : 191 ||||||||||||||! ! !! !!::!..|||:!!.!!!!. !:!!||||||! !|| roPheAsnThrThrIleSerProPheArgGluIleGlyLeuAlaValGluThrPheAl 456451 : CTTTTAACACCACTATATCTCCTTTCCGAGAGATTGGTTTGGCTGTCGAAACTTTTGC : 456507 192 : aValSerGlyGlyLeuValAlaIleValGlyMetAspSerIleThrIleTyrMetSer : 210 ||||||||||||||||:!!::!||||||!.!||||||!:!|||||| ! |||!!! aValSerGlyGlyLeuLeuSerIleValAlaMetAspAsnIleThrAlaMetMetCys 456508 : TGTTTCTGGTGGTTTATTGAGCATAGTTGCCATGGACAATATCACTGCAATGATGTGC : 456564 211 : SerIleIleThrMetLeuLeuAspIleLeuSerCysAsnPheGluSerCysSerGlyA : 230 ||| |||||| ! !!!!|||!!:|||!:! !||||||!.!|||!!!.!!! SerGlnIleThrAlaGlnPheAspMetLeuAsnValLeuPheGluLysCysThrSerG 456565 : AGCCAGATCACTGCTCAGTTCGATATGTTGAACGTACTTTTTGAGAAGTGTACTAGTC : 456624 231 : rgSerAlaAsn : 233 :! !! !||| lnValGluAsn 456625 : AAGTGGAGAAT : 456635 vulgar: gi|805759258|ref|XP_012151297.1| 0 233 . KQ414618.1 453891 456635 + 645 M 24 72 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 96 288 S 0 1 5 0 2 I 0 1901 3 0 2 S 1 2 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 453892 456635 645 + . gene_id 1 ; sequence gi|805759258|ref|XP_012151297.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 453892 453965 . + . KQ414618.1 exonerate:protein2genome:local exon 453892 453965 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 453966 453967 . + . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 453966 454105 . + . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 454104 454105 . + . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 454106 454395 . + . KQ414618.1 exonerate:protein2genome:local exon 454106 454395 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 454396 454397 . + . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 454396 456300 . + . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 456299 456300 . + . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 456301 456635 . + . KQ414618.1 exonerate:protein2genome:local exon 456301 456635 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 453892 456635 645 + . alignment_id 1 ; Query gi|805759258|ref|XP_012151297.1| ; Align 453892 1 72 ; Align 454107 26 288 ; Align 456303 123 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759258|ref|XP_012151297.1| PREDICTED: odorant receptor 83a-like isoform X1 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence Model: protein2genome:local Raw score: 639 Query range: 265 -> 435 Target range: 457484 -> 459228 266 : GluGluArgGlnArgAspLysTrpAspSerAsnLysPheLeuHisArgTyrLysAsnC : 285 ||| !.!!:!! !:!!||| ! !!..!|||! !||||||!.!|||||||||!.!| GluThrAsnArgIleAsnLysThrHisAspAsnThrPheLeuArgArgTyrLysThrC 457485 : gAAACCAATCGAATTAACAAGACGCACGACAACACGTTTCTTCGTCGTTACAAGACCT : 457542 286 : ysIleArgPheHisGlnArgLeuValThrLeuSerLysGluTyrAsnArgLeuPheSe : 304 ||:!:!:!|||||||||||||||:!!:!!:!!!!!|||!!:|||||||||:!!!:!|| ysLeuGlnPheHisGlnArgLeuIleSerIleThrLysAspTyrAsnArgIleTyrSe 457543 : GTCTGCAATTTCATCAGAGATTGATCTCCATAACCAAAGATTACAACAGAATCTACAG : 457599 305 : rSerSerMetPheValGlnMetLeuSerSerThrSerMetIleCysLeuThrGlyPhe : 323 ||||||||||||||||||||||:!!||||||||||||!!:|||||||||||||||||| rSerSerMetPheValGlnMetIleSerSerThrSerIleIleCysLeuThrGlyPhe 457600 : CTCGAGCATGTTCGTCCAGATGATCTCCAGCACTTCGATTATTTGCTTAACTGGTTTC : 457656 324 : GlnAlaValVal >>>> Target Intron 1 >>>> ValGlyGlyGlnSerSe : 333 |||||||||||| 67 bp ||||||||||||||||| GlnAlaValVal++ ++ValGlyGlyGlnSerSe 457657 : CAAGCTGTCGTGgt.........................agGTCGGAGGGCAGAGCTC : 457753 334 : rAspIleMetLysPheGlyMetTyrLeuSerAlaAlaValSerGlnLeuLeuTyrIle : 352 |||||||||||||||||||!!:|||||||||||||||:!!|||||||||||||||||| rAspIleMetLysPheGlyIleTyrLeuSerAlaAlaIleSerGlnLeuLeuTyrIle 457754 : GGACATCATGAAGTTCGGGATCTACTTGAGCGCGGCCATATCTCAGCTGTTGTACATC : 457810 353 : CysTrpIleGlyAsnGluLeuSerTyrSer >>>> Target Intron 2 >>>> : 363 ||||||:!:||||||||||||||||||||| 87 bp CysTrpLeuGlyAsnGluLeuSerTyrSer++ + 457811 : TGTTGGCTGGGGAACGAGCTGAGCTACTCGgt.........................a : 457928 364 : SerSerValLeuAspLysSerGlnTrpLeuSerAspTrpHisHisGluHisLeuPro : 381 |||||||||:!!|||!:!|||||||||||||||! !|||:!!|||||||||||| !! +SerSerValIleAspArgSerGlnTrpLeuSerGlyTrpAsnHisGluHisLeuThr 457929 : gAGTTCGGTGATAGACAGGAGTCAGTGGCTCTCCGGTTGGAATCACGAACATTTGACT : 457984 382 : SerIleValGlnValPheThrLeuSerThrMetSerThrArgArgThrLeuThrLeuL : 401 |||||||||:!!:!!||||||||||||||||||! !||||||!:!:!!:!!||||||| SerIleValLysIlePheThrLeuSerThrMetPheThrArgGlnSerIleThrLeuL 457985 : AGTATCGTGAAAATCTTCACTCTGTCCACCATGTTCACCAGACAGTCGATTACGTTGA : 458044 402 : ysAlaGlyIlePhePheValLeuSerLeuGluThrPheIleAla >>>> Target : 416 ||||||||:!!|||!:!||||||||||||||||||||||||||| 108 ysAlaGlyValPheTyrValLeuSerLeuGluThrPheIleAla++ 458045 : AGGCTGGCGTATTTTATGTACTATCTCTGGAGACTTTTATCGCGgt............ : 458091 417 : Intron 3 >>>> IleValLysGlySerTyrSerValPheThrLeuLeuAsnAsnM : 430 0 bp ||||||!:! !!||||||||||||||||||||||||||||||| ++IleValArgArgSerTyrSerValPheThrLeuLeuAsnAsnM 458092 : .............agATCGTAAGGAGGTCCTACTCAGTCTTCACTCTATTGAACAACA : 459211 431 : etGlnThrThrAspPro : 435 ||!!.:!!|||..!||| etHisSerThrSerPro 459212 : TGCATTCGACGAGTCCG : 459228 vulgar: gi|805759258|ref|XP_012151297.1| 265 435 . KQ414618.1 457484 459228 + 639 M 62 186 5 0 2 I 0 63 3 0 2 M 35 105 5 0 2 I 0 83 3 0 2 M 53 159 5 0 2 I 0 1076 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 457485 459228 639 + . gene_id 2 ; sequence gi|805759258|ref|XP_012151297.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 457485 457670 . + . KQ414618.1 exonerate:protein2genome:local exon 457485 457670 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 457671 457672 . + . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 457671 457737 . + . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 457736 457737 . + . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 457738 457842 . + . KQ414618.1 exonerate:protein2genome:local exon 457738 457842 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 457843 457844 . + . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 457843 457929 . + . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 457928 457929 . + . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 457930 458088 . + . KQ414618.1 exonerate:protein2genome:local exon 457930 458088 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 458089 458090 . + . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 458089 459168 . + . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 459167 459168 . + . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 459169 459228 . + . KQ414618.1 exonerate:protein2genome:local exon 459169 459228 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 457485 459228 639 + . alignment_id 2 ; Query gi|805759258|ref|XP_012151297.1| ; Align 457485 266 186 ; Align 457738 328 105 ; Align 457930 363 159 ; Align 459169 416 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759615|ref|XP_012152339.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 532 Query range: 0 -> 233 Target range: 1030017 -> 1028765 1 : MetPheGlnAsnThrSerProGluLysAlaIleThrPheThrArgPheCysLeuAl : 19 |||!!.:!! !! !!|||||||||!:!||||||:!!.!!..!!:! !! ! !|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1030017 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1029963 20 : aLeuSerLeuPheLeuProLeuSerSerArgAlaThrLysLeuGlnThrIleCysT : 38 |!!!!!!! !! !! !|||||| !!|||! !|||||||||! !! !..!:!! ! aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1029962 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1029906 39 : yrLysSerLeuLysPheIleValValLeuSerSerPhePheLeuPheLeuProIle : 56 :!|||! !|||!:!! !.!!:!!:!!|||!:!:!!!!. ! ||||||||||||:!: heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1029905 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1029852 57 : IleAsnSerLeuCysMetTyrGln<->AspProThrAsnValSerGlnSerValCy : 74 :!! !!:!!||| !:!!:!!!:! ||| !! !||||||:!!:!!:!!!.!|| LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1029851 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1029795 75 : sPheLeuMetGlyGluPheGlnLeuIleSerAsnThrIleIleGlyThrValGlnT : 93 |.!. !:!:!.! |||:::... ...|||.!!:!! !!! !! !|||| sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1029794 : CCTGACGCTTGCCctcgtgcaaatatttttccagacTTTCGTTTGCATCGGCCAAT : 1029738 94 : yrAspArgLeuGln >>>> Target Intron 1 >>>> GluValIleGluV : 102 |||||!.!!!!||| 550 bp :!!:!!||||||! yrAspHisPheGln++ ++LysLeuIleGluG 1029737 : ACGATCATTTTCAGgt.........................agAAACTAATCGAAG : 1029161 103 : alMetGluAlaCysCysLysAsnAlaThrLeuHisGluLysValValPheGlnArg : 120 !|||:!! !||||||:!!!..|||! !! !:!!|||!:!! !|||||||||||| luMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheGlnArg 1029160 : AAATGAAGATTTGCTGTGAAACAGCGAAACCATACGAAAGAGACGTCTTTCAACGA : 1029107 121 : TyrIleAsnThrTyrSerProPheTyrGlySerSerAlaIleTrpPheTyrValTh : 139 |||:!!:!!! !|||||| !||||||! !!!!!!!:!! |||||||||:!!|| TyrValAspLysTyrSerLeuPheTyrValThrCysSerSerTrpPheTyrLeuTh 1029106 : TACGTCGATAAATACTCTTTATTTTACGTAACATGTTCGTCGTGGTTTTACTTAAC : 1029050 140 : rGlyMetIleLeuIleLeuGlyThrLeuValSerSerGluProPheProThrAsnA : 158 |!.!:!:|||:!!:!!||||||!:!! !:!!! !|||!!:|||||||||||||||| rAlaValIleMetValLeuGlySerArgIleIleSerAspProPheProThrAsnA 1029049 : AGCAGTTATTATGGTTCTGGGAAGTCGGATTATATCTGATCCTTTTCCAACCAACG : 1028993 159 : laGluTyrProPheProValAspTyrGlnProLeuGluThrIleValPheLeuHis : 176 ||! !|||||||||||||||:!!!:!:!!||||||..!!:!|||:!!|||:!!||| laValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHis 1028992 : CCGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGTATCATTTTTATGCAC : 1028939 177 : GlnSerLeuValLeuIleGlnCysCysAlaHisAlaCysIleAsnMetPheCysAl : 195 ||||||!!!||| !|||||||||..!||||||.!! !!!!:|||:!!.!. !|| GlnSerPheValGlyIleGlnCysAlaAlaHisThrSerMetAsnValLeuThrAl 1028938 : CAATCGTTCGTTGGCATACAGTGTGCTGCACACACTAGTATGAATGTGCTAACTGC : 1028882 196 : aPheLeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuLysMetGluLeuArgG : 214 |!!.||||||||||||||||||||||||||||||||||||! !||||||||||||. aLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuMetMetGluLeuArgA 1028881 : ATTGTTATTACTATTTGCTGCAGCTCGTTTCGAGATACTGATGATGGAGCTGAGGA : 1028825 215 : luValMetAsnIleGluGlnPheValMetCysValGluLysTyrTyrThrValLys : 232 !.|||! :!!|||||| !.!.:!!! |||:!!:!!||||||! ! !|||::! snValSerAspIleGluThrLeuIleLysCysMetLysLysTyrSerIleValArg 1028824 : ATGTCAGTGACATTGAAACACTGATTAAATGTATGAAAAAGTATTCGATCGTACGG : 1028771 233 : Arg : 233 ||| Arg 1028770 : AGG : 1028766 vulgar: gi|805759615|ref|XP_012152339.1| 0 233 . KQ414618.1 1030017 1028765 - 532 M 64 192 G 0 3 M 33 99 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028766 1030017 532 - . gene_id 1 ; sequence gi|805759615|ref|XP_012152339.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1029724 1030017 . - . KQ414618.1 exonerate:protein2genome:local exon 1029724 1030017 . - . insertions 3 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1029722 1029723 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1029174 1029723 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1029174 1029175 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028766 1029173 . - . KQ414618.1 exonerate:protein2genome:local exon 1028766 1029173 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028766 1030017 532 - . alignment_id 1 ; Query gi|805759615|ref|XP_012152339.1| ; Align 1030018 1 192 ; Align 1029823 65 99 ; Align 1029174 98 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759615|ref|XP_012152339.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 487 Query range: 0 -> 233 Target range: 1039184 -> 1037932 1 : MetPheGlnAsnThrSerProGluLysAlaIleThrPheThrArgPheCysLeuAl : 19 |||!!.:!! !! !!|||||||||!:!||||||:!!.!!..!!:! !! ! !|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1039184 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1039130 20 : aLeuSerLeuPheLeuProLeuSerSerArgAlaThrLysLeuGlnThrIleCysT : 38 |!!!!!!! !! !! !|||||| !!|||! !|||||||||! !! !..!:!! ! aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1039129 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1039073 39 : yrLysSerLeuLysPheIleValValLeuSerSerPhePheLeuPheLeuProIle : 56 :!|||! !|||!:!! !.!!:!!:!!|||!:!:!!!!. ! ||||||||||||:!: heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1039072 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1039019 57 : IleAsnSerLeuCysMetTyrGln<->AspProThrAsnValSerGlnSerValCy : 74 :!! !!:!!||| !:!!:!!!:! ||| !! !||||||:!!:!!:!!!.!|| LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1039018 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1038962 75 : sPheLeuMetGlyGluPheGlnLeuIleSerAsnThrIleIleGlyThrValGlnT : 93 |.!. !:!:!.! |||:::... ...|||...::: !!! !! !|||| sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1038961 : CCTGACGCTTGCTctcgtgcaaatatttttccaaactttcgttTGCATCGGTCAAT : 1038905 94 : yr{A} >>>> Target Intron 1 >>>> {sp}ArgLeuGlnGluValIle : 100 ||{|} 550 bp {||}! !||||||:!!:!!||| yr{A}-+ -+{sp}ThrLeuGlnLysLeuIle 1038904 : AC{G}at.........................tg{AC}ACGTTGCAGAAACTAATC : 1038334 101 : GluValMetGluAlaCysCysLysAsnAlaThrLeuHisGluLysValValPheGl : 119 |||! !|||:!! !||||||:!!!..|||! !! !:!!|||!:!! !|||||||| GluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheGl 1038333 : GAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGACGTCTTCCA : 1038277 120 : nArgTyrIleAsnThrTyrSerProPheTyrGlySerSerAlaIleTrpPheTyrV : 138 |||||||:!!|||! !:!:||| |||||| ::: !!:!! !|||||||||: nArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheTyrL 1038276 : ACGATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTTACT : 1038220 139 : alThrGlyMetIleLeuIleLeuGlyThrLeuValSerSerGluProPheProThr : 156 !!|||!.!!!:|||:!!:!!||||||!:!|||:!!! !|||!!:|||||||||||| euThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPheProThr 1038219 : TAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACC : 1038166 157 : AsnAlaGluTyrProPheProValAspTyrGlnProLeuGluThrIleValPheLe : 175 ||||||! !|||||||||||||||:!!!:!:!!||||||..!!:!|||:!!|||:! AsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMe 1038165 : AACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTAT : 1038109 176 : uHisGlnSerLeuValLeuIleGlnCysCysAlaHisAlaCysIleAsnMetPheC : 194 !|||||||||!!!||| !|||||||||..!||||||||| !!!!:|||:!!.!!! tHisGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuS 1038108 : GCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTT : 1038052 195 : ysAlaPheLeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuLysMetGluLeu : 212 !|||.!.||||||||||||.!!.!!|||||||||||||||||| !! !|||||| erAlaLeuLeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeu 1038051 : CTGCACTGTTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTG : 1037998 213 : ArgGluValMetAsnIleGluGlnPheValMetCysValGluLysTyrTyrThrVa : 231 |||.!.|||! :!!|||||| !.!.:!!! ! !!:!!:!!||||||! ||||| ArgAsnValAsnAspIleGluThrLeuIleLysSerMetLysLysTyrSerThrVa 1037997 : AGGAATGTCAATGATATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGT : 1037941 232 : lLysArg : 233 |::!||| lArgArg 1037940 : GCGGAGG : 1037933 vulgar: gi|805759615|ref|XP_012152339.1| 0 233 . KQ414618.1 1039184 1037932 - 487 M 64 192 G 0 3 M 29 87 S 0 1 5 0 2 I 0 546 3 0 2 S 1 2 M 139 417 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037933 1039184 487 - . gene_id 2 ; sequence gi|805759615|ref|XP_012152339.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1038902 1039184 . - . KQ414618.1 exonerate:protein2genome:local exon 1038902 1039184 . - . insertions 3 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1038900 1038901 . - . intron_id 1 ; splice_site "AT" KQ414618.1 exonerate:protein2genome:local intron 1038352 1038901 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1038352 1038353 . - . intron_id 0 ; splice_site "TG" KQ414618.1 exonerate:protein2genome:local cds 1037933 1038351 . - . KQ414618.1 exonerate:protein2genome:local exon 1037933 1038351 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037933 1039184 487 - . alignment_id 2 ; Query gi|805759615|ref|XP_012152339.1| ; Align 1039185 1 192 ; Align 1038990 65 87 ; Align 1038350 95 417 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759615|ref|XP_012152339.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 470 Query range: 0 -> 265 Target range: 1053857 -> 1052381 1 : MetPheGlnAsnThrSerProGluLysAlaIleThrPheThrArgPheCysLeuAl : 19 |||!!.:!!.!. !!!!|||||||||!.!||| !.!!! ! !!||| !!:!!|| MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : aLeuSerLeuPheLeuProLeuSerSerArgAlaThrLysLeuGlnThrIleCysT : 38 ||||:!!:!!! !! !|||||||||||| !|||!:!||| !|||..!:::...: aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 39 : yrLysSerLeuLysPheIleValValLeuSerSerPhePheLeuPheLeuProIle : 56 ::||| |||:::... !!.!:!!|||:!!.!!.!!|||.!!||||||:!: heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 57 : IleAsnSerLeuCysMetTyrGlnAspProThrAsnVal<->SerGlnSerValCy : 74 :!: !!||| !! !:!!:!! ||| !..!! !||| |||||||||:!!|| LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 75 : sPheLeuMetGlyGluPheGlnLeuIleSerAsnThrIleIleGlyThrValGlnT : 93 |!!.! !||||||! ||||||:!!|||! !.!.|||:!!||| !! !..!.!.| sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCysPheThrAsnT 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGTTTCACCAACT : 1053578 94 : yrAspArgLeuGln >>>> Target Intron 1 >>>> GluValIleGluV : 102 |||||! !|||||| 613 bp ..!:!!||| !! yrAspLeuLeuGln++ ++ArgIleIleThrG 1053577 : ACGACCTTCTGCAGgt.........................agCGAATAATTACAG : 1052938 103 : alMetGluAlaCysCysLysAsnAlaThrLeuHisGluLysValValPheGlnArg : 120 !||| .!!! ! !|||.!.||| !! ! !|||!:!! !:!!.!!!!.!.! luMetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLeuHisAsn 1052937 : AAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCACAAC : 1052884 121 : TyrIleAsnThrTyrSerProPheTyrGlySerSerAlaIleTrpPheTyrValTh : 139 ||||||.!.! !! !!.!! !|||||||||.!!||| !|||||| |||:!! TyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrTyrLeuCy 1052883 : TATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACATACCTCTG : 1052827 140 : rGlyMetIleLeuIleLeuGlyThrLeuValSerSerGluProPheProThrAsnA : 158 !!.!! !!!!:!!|||||| !!:!!||| ! !!.!.|||||||||!:!!:!| sAlaThrCysPheValLeuGlyProValValLeuProAsnProPheProSerSerA 1052826 : TGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGCAGTG : 1052770 159 : laGluTyrProPheProValAspTyrGlnProLeuGluThrIleValPheLeuHis : 176 ||||||||||||||! !|||:!! ! !|||:!!.!..!!||||||!:!|||||| laGluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyrLeuHis 1052769 : CAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTACCTGCAC : 1052716 177 : GlnSerLeuValLeuIleGlnCysCysAlaHisAlaCysIleAsnMetPheCysAl : 195 ||||||!!!:!! !.!!|||! ! !!|||||| !|||:!!!:!!!:||| ! || GlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePheGlyAl 1052715 : CAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTTCGGAGC : 1052659 196 : aPheLeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuLysMetGluLeuArgG : 214 |.!!||||||! !.!!.!!||||||||||||.!. !|||! :!!|||:!!!:!: aLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluValGlnG 1052658 : TCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTTCAAC : 1052602 215 : luValMetAsnIleGluGlnPheValMetCysValGluLysTyrTyrThrValLys : 232 !! ! !:!|||.!...!!!.:!!!!:||||||:!!||| ! !:!!!:! lnSerSerSerIleHisMetLeuIleIleCysValLysLysGlnLeuLeuLeuArg 1052601 : AAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCTACTACTGAGG : 1052548 233 : {Ar} >>>> Target Intron 2 >>>> {g}TyrAlaLysGlnValValSe : 240 {||} 65 bp {|}|||||||||:!!||||||.. {Ar}++ ++{g}TyrAlaLysGluValValAs 1052547 : {AG}gt.........................ag{G}TACGCCAAAGAAGTGGTTGA : 1052459 241 : rValValArgLeuGluValLeuCysMetLeuValLeuSerAlaIleAlaValValP : 259 !! ! !!|||||| !|||||| ! :!!!.!:!!||| !:!:|||:!!..!. pGlyPheArgLeuIleValLeuAsnAlaIleAlaMetSerIleLeuAlaLeuThrL 1052458 : CGGTTTTCGGCTTATAGTACTCAACGCTATAGCAATGAGCATTTTGGCTCTTACTC : 1052402 260 : heCysGlyIleIleLeuIle : 265 !. !!.!!|||! !|||||| euSerSerIleThrLeuIle 1052401 : TAAGTAGTATTACATTAATA : 1052382 vulgar: gi|805759615|ref|XP_012152339.1| 0 265 . KQ414618.1 1053857 1052381 - 470 M 69 207 G 0 3 M 28 84 5 0 2 I 0 609 3 0 2 M 135 405 S 0 2 5 0 2 I 0 61 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1052382 1053857 470 - . gene_id 3 ; sequence gi|805759615|ref|XP_012152339.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1053564 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053564 1053857 . - . insertions 3 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1053562 1053563 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052951 1053563 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052951 1052952 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052544 1052950 . - . KQ414618.1 exonerate:protein2genome:local exon 1052544 1052950 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052542 1052543 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052479 1052543 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1052479 1052480 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052382 1052478 . - . KQ414618.1 exonerate:protein2genome:local exon 1052382 1052478 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1052382 1053857 470 - . alignment_id 3 ; Query gi|805759615|ref|XP_012152339.1| ; Align 1053858 1 207 ; Align 1053648 70 84 ; Align 1052951 98 405 ; Align 1052478 234 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759615|ref|XP_012152339.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 307 Query range: 267 -> 371 Target range: 1036024 -> 1035477 268 : GlnProLeuAlaThrLysGlyGlnTyrLeuProValValGlyThrAlaLeuLeuGl : 286 ||||||||||||..!|||! !|||!:!||| !!:!! !||||||||||||||||| GlnProLeuAlaValLysValGlnPheLeuThrMetSerGlyThrAlaLeuLeuGl 1036024 : CAACCGTTGGCTGTTAAAGTTCAATTTCTTACTATGAGTGGAACCGCGTTGCTGGA : 1035970 287 : uValPheValIleAlaTrpProAlaAspHisLeuLeuAspMet >>>> Target : 301 |||||||:!! !:!! |||||||||||||||:!!|||||| 1 uValPheMetCysSerLeuProAlaAspHisLeuIleAspMet++ 1035969 : AGTGTTTATGTGTTCACTACCAGCTGACCATTTGATAGATATGgt........... : 1035923 302 : Intron 1 >>>> SerGluAsnValMetHisGluIleTyrLysSerLysTrpT : 314 59 bp |||||||||:!!|||!!.! !||||||:!!|||||||||| ++SerGluAsnIleMetGlnGlyIleTyrGluSerLysTrpT 1035922 : ..............agAGCGAGAACATAATGCAAGGAATATATGAATCGAAATGGT : 1035727 315 : yrAspGlnAspValArgMetGlnArgAspValArgValMetMetLeuProGlnLys : 332 ||!!:!:!...:::::::::|||:::..!..! !:!!|||:!! !||||||... yrGluArgSerLeuLysIleGlnLysSerThrValLeuMetLeuThrProGlnSer 1035726 : ACGAACGAtctctaaaaattcaaaagtcTACAGTCCTCATGTTGACTCCTCAATCT : 1035673 333 : AlaValAlaIleLysValProCysLeuIleSerThrLeuSerLeuAsnTyrPheCy : 351 !!|||.!!:!!|||:!! !||||||||| !!...||||||||||||::::::|| ProValThrValLysIleLysCysLeuIleProValLeuSerLeuAsnPheTyrCy 1035672 : CCGGTGACAGTAAAAATCAAGTGCCTCATTCCAGttctttctttgaatttttactg : 1035616 352 : sSer >>>> Target Intron 2 >>>> PheIleSerAsnValPheSerLe : 360 |||| 76 bp !:!:!!||||||||||||||||| sSer++ ++TyrValSerAsnValPheSerLe 1035615 : CTCGgt.........................agTACGTCTCAAATGTGTTCTCTTT : 1035513 361 : uPheSerValLeuArgIleAlaIleLeuLysAsp : 371 ||||!!!!.!||||||||||||!!::!!!!.||| uPheThrAlaLeuArgIleAlaMetIleAsnAsp 1035512 : ATTTACCGCTTTAAGAATAGCCATGATAAATGat : 1035478 vulgar: gi|805759615|ref|XP_012152339.1| 267 371 . KQ414618.1 1036024 1035477 - 307 M 33 99 5 0 2 I 0 155 3 0 2 M 52 156 5 0 2 I 0 72 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1035478 1036024 307 - . gene_id 4 ; sequence gi|805759615|ref|XP_012152339.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1035926 1036024 . - . KQ414618.1 exonerate:protein2genome:local exon 1035926 1036024 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1035924 1035925 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1035767 1035925 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1035767 1035768 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1035611 1035766 . - . KQ414618.1 exonerate:protein2genome:local exon 1035611 1035766 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1035609 1035610 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1035535 1035610 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1035535 1035536 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1035478 1035534 . - . KQ414618.1 exonerate:protein2genome:local exon 1035478 1035534 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1035478 1036024 307 - . alignment_id 4 ; Query gi|805759615|ref|XP_012152339.1| ; Align 1036025 268 99 ; Align 1035767 301 156 ; Align 1035535 353 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759615|ref|XP_012152339.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 259 Query range: 102 -> 233 Target range: 1058125 -> 1057732 103 : MetGluAlaCysCysLysAsnAlaThrLeuHisGluLysValValPheGlnArgTy : 121 |||||| !! !|||!:! !!|||||| ||||||||||||.!.|||||||| MetGluAsnPheCysArgTyrAlaThrSerLysGluLysValValLeuGlnArgTy 1058125 : ATGGAGAATTTCTGCAGATACGCCACCtcgaaggaaaaagttgtcCTGCAACGATA : 1058071 122 : rIleAsnThrTyrSerProPheTyrGlySerSerAlaIleTrpPheTyrValThrG : 140 |:!::!!! !|||!.! !|||:!!|||! !! ! !:!!|||! !!:!:!!||| rValAspArgTyrLysTyrPheHisGlyIleTyrIleLeuTrpCysPheLeuThrT 1058070 : CGTGGACAGATACAAATACTTTCATGGGATTTATATATTATGGTGCTTCCTCACGA : 1058014 141 : lyMetIleLeuIleLeuGlyThrLeuValSerSerGluProPheProThrAsnAla : 158 !!!:.!!:!!||| !||| !!||| !||| !!:!! !!|||||||||:!!||| hrIlePheValIleSerGlyProLeuTyrSerProGlnThrPheProThrHisAla 1058013 : CCATCTTCGTCATAAGTGGTCCATTGTACTCACCACAGACGTTCCCCACTCATGCG : 1057960 159 : GluTyrProPheProValAspTyrGlnProLeuGluThrIleValPheLeuHisGl : 177 !|||||||||! !|||!!::!! !! !!!!::: :::::::::...||||| IleTyrProPheGlnValGluHisThrLeuPheLysIleValIleTyrPheHisGl 1057959 : ATATATCCTTTCCAAGTGGAACATACACTGTTCAagattgttatttatttccatCA : 1057903 178 : nSerLeuValLeuIleGlnCysCysAlaHisAlaCysIleAsnMetPheCysAlaP : 196 |||||||||| !.!!|||...! !||| ! !..!|||:!!! !|||. nSerLeuValGlyPheGlnAlaSerAlaGlyMetAlaIleAspThrGlnIleAlaL 1057902 : GTCGTTAGTTGGTTTTCAGGCGTCCGCTGGTATGGCCATCGACACTCAAATTGCTC : 1057846 197 : heLeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuLysMetGluLeuArgGlu : 214 !!||||||! !!:!||||||||||||||||||:!!||| !! |||:!!|||.!. euLeuLeuArgTyrAlaAlaAlaArgPheGluLeuLeuGlyAsnGluMetArgAsn 1057845 : TTCTTCTGCGATACGCGGCTGCCAGGTTCGAGCTATTGGGAAACGAGATGCGAAAT : 1057792 215 : ValMetAsnIleGluGlnPheValMetCysValGluLysTyrTyrThrValLysAr : 233 !.!! !.! ! :!!||| ! |||:!!||||||:!! ! !:!! || AlaAsnThrHisCysGluPheAsnAlaCysIleGluLysHisSerGluLeuLeuAr 1057791 : GCAAATACTCACTGTGAATTCAATGCCTGCATAGAGAAGCACAGTGAACTTCTCAG : 1057735 234 : g : 233 | g 1057734 : g : 1057733 vulgar: gi|805759615|ref|XP_012152339.1| 102 233 . KQ414618.1 1058125 1057732 - 259 M 131 393 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057733 1058125 259 - . gene_id 5 ; sequence gi|805759615|ref|XP_012152339.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1057733 1058125 . - . KQ414618.1 exonerate:protein2genome:local exon 1057733 1058125 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057733 1058125 259 - . alignment_id 5 ; Query gi|805759615|ref|XP_012152339.1| ; Align 1058126 103 393 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759615|ref|XP_012152339.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 156 Query range: 299 -> 352 Target range: 1028207 -> 1028048 300 : MetSerGluAsnValMetHisGluIleTyrLysSerLysTrpTyrAspGlnAspVa : 318 ..!|||||||||:!!|||!!.! !||||||:!!||||||||||||!!:!:!...:: GlnSerGluAsnIleMetGlnGlyIleTyrGluSerLysTrpTyrGluArgSerLe 1028207 : CAGAGCGAGAACATAATGCAAGGAATATATGAATCAAAATGGTACGAACGAtctct : 1028153 319 : lArgMetGlnArgAspValArgValMetMetLeuProGlnLysAlaValAlaIleL : 337 :::::::|||:::..!..! !:!!|||:!! !||||||... !!|||.!!:!!| uLysIleGlnLysSerThrValLeuMetLeuThrProGlnSerProValThrValL 1028152 : aaaaattcaaaagtcTACAGTCCTCATGTTGACTCCTCAATCTCCGGTGACAGTAA : 1028096 338 : ysValProCysLeuIleSerThrLeuSerLeuAsnTyrPheCysSer : 352 ||:!! !||||||||| !!...||||||||||||::::::|||||| ysIleLysCysLeuIleProValLeuSerLeuAsnPheTyrCysSer 1028095 : AAATCAAGTGCCTCATTCCAGttctttctttgaatttttactgCTCG : 1028049 vulgar: gi|805759615|ref|XP_012152339.1| 299 352 . KQ414618.1 1028207 1028048 - 156 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028049 1028207 156 - . gene_id 6 ; sequence gi|805759615|ref|XP_012152339.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028049 1028207 . - . KQ414618.1 exonerate:protein2genome:local exon 1028049 1028207 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028049 1028207 156 - . alignment_id 6 ; Query gi|805759615|ref|XP_012152339.1| ; Align 1028208 300 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759615|ref|XP_012152339.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 267 -> 311 Target range: 1028385 -> 1028253 268 : GlnProLeuAlaThrLysGlyGlnTyrLeuProValValGlyThrAlaLeuLeuGl : 286 ||||||!!!|||..!|||!.!|||!:!||| !!||| !||||||||||||||||| GlnProPheAlaValLysAlaGlnPheLeuThrValSerGlyThrAlaLeuLeuGl 1028385 : CAACCGTTCGCTGTGAAAGCTCAGTTTCTTACTGTGAGTGGAACCGCTTTGCTGGA : 1028331 287 : uValPheValIleAlaTrpProAlaAspHisLeuLeuAspMetSerGluAsnValM : 305 ||||.!!:!! !:!! |||||||||||||||:!!|||||| !...:!! !: uValLeuMetCysSerLeuProAlaAspHisLeuIleAspMetValSerAspTyrL 1028330 : AGTGCTTATGTGTTCACTACCAGCTGACCATTTGATAGATATGGTAAGTGATTATT : 1028274 306 : etHisGluIleTyrLysSer : 311 !! !.!!!:!|||:!! euMetLeuPhePheLysAla 1028273 : TGATGCTATTCTTTAAGGCT : 1028254 vulgar: gi|805759615|ref|XP_012152339.1| 267 311 . KQ414618.1 1028385 1028253 - 111 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028254 1028385 111 - . gene_id 7 ; sequence gi|805759615|ref|XP_012152339.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028254 1028385 . - . KQ414618.1 exonerate:protein2genome:local exon 1028254 1028385 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028254 1028385 111 - . alignment_id 7 ; Query gi|805759615|ref|XP_012152339.1| ; Align 1028386 268 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759602|ref|XP_012152298.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 307 Query range: 55 -> 162 Target range: 1025928 -> 1023762 56 : PheGlnSerLysAsnPheIleGluLeuIleLysPhePheThrLeuThrIlePheSe : 74 ...|||... |||||||||::: |||||| ..!:!!.!!!!:||||| LeuGlnLysValLeuPheIleGluIleSerLysPheSerValValAlaMetPheSe 1025928 : ttgcagaaagtattattcatcgaaatttcgaaattttccgtGGTAGCTATGTTTTC : 1025874 75 : rValLeuArgPheValIleCysSerTrpValAlaAspThrMetSerGluAsn >> : 92 |:!!|||||||||:!! !|||!!!|||!.!||||||! !|||!!!|||||| rMetLeuArgPheLeuAlaCysThrTrpAlaAlaAspArgMetThrGluAsn++ 1025873 : AATGCTAAGATTCCTCGCCTGCACTTGGGCAGCTGACAGAATGACCGAAAATgt.. : 1025818 93 : >> Target Intron 1 >>>> AlaAsnGlyIleAlaTrpLysIleTyrAspS : 102 1779 bp |||:!!.!!||||||||| ! |||||||||| ++AlaHisSerIleAlaTrpAspIleTyrAspS 1025817 : .......................agGCACACAGTATTGCCTGGGATATTTACGACT : 1024011 103 : erProTrpThrTyrSerSerProArgIleArgArgMetAlaLeuLeuIleIleAla : 120 || !!|||! ! !!:!!||| !!!:!:!!|||!!!! ! !:!!||||||||| ! erSerTrpIleAsnAlaSerThrLysValArgSerArgIleValLeuIleIleGln 1024010 : CCTCGTGGATTAACGCGTCCACGAAGGTTCGCAGTAGGATCGTGCTAATTATTCAA : 1023957 121 : ArgCysGlnLysProValAlaIleHisAlaThrGlyPheLeuSerSerTrpAsnLe : 139 |||||||||!:!|||:!!.!!|||||||||! !||||||!!!!!!:!!|||::!|| ArgCysGlnArgProIleThrIleHisAlaIleGlyPhePheThrAlaTrpSerLe 1023956 : AGGTGCCAGAGACCTATTACGATTCACGCTATTGGATTTTTCACCGCCTGGTCTTT : 1023900 140 : uLysPheCysAlaGln >>>> Target Intron 2 >>>> ValLeuTyrTh : 148 ||||||||||!.!||| 66 bp ||||||||||| uLysPheCysGlyGln++ ++ValLeuTyrTh 1023899 : AAAATTCTGTGGACAGgt.........................agGttctttatac : 1023807 149 : rAsnAlaThrTyrLeuMetThrLeuArgAlaValValArgGlu : 162 | |||::!!!! !.!!|||!:!||||||:!!|||||| rIlePheThrPhePheSerAlaLeuLysAlaValLeuArgGlu 1023806 : aatttttacctTCTTCTCGGCACTGAAGGCAGTGCTACGTGAA : 1023763 vulgar: gi|805759602|ref|XP_012152298.1| 55 162 . KQ414618.1 1025928 1023762 - 307 M 36 108 5 0 2 I 0 1775 3 0 2 M 53 159 5 0 2 I 0 62 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1023763 1025928 307 - . gene_id 1 ; sequence gi|805759602|ref|XP_012152298.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1025821 1025928 . - . KQ414618.1 exonerate:protein2genome:local exon 1025821 1025928 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1025819 1025820 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1024042 1025820 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1024042 1024043 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1023883 1024041 . - . KQ414618.1 exonerate:protein2genome:local exon 1023883 1024041 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1023881 1023882 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1023817 1023882 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1023817 1023818 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1023763 1023816 . - . KQ414618.1 exonerate:protein2genome:local exon 1023763 1023816 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1023763 1025928 307 - . alignment_id 1 ; Query gi|805759602|ref|XP_012152298.1| ; Align 1025929 56 108 ; Align 1024042 92 159 ; Align 1023817 145 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759628|ref|XP_003700090.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 576 Query range: 0 -> 233 Target range: 1062912 -> 1061744 1 : MetGlyCysLeuLeuGluValIleLeuAspLeuValMetTyrLysThrTyrGlyAl : 19 ||| !..!||||||||||||:!::!!|||:!!:!!:!:! !|||! ! ! .!!|| MetThrAlaLeuLeuGluValLeuMetAspMetIleLeuCysLysMetLysSerAl 1062912 : ATGACTGCTCTGCTGGAGGTGTTGATGGACATGATTCTCTGCAAAATGAAGAGTGC : 1062858 20 : aGlnLeuGln >>>> Target Intron 1 >>>> IleLeuValArgThrVa : 28 |||||||||| 80 bp :!:|||||| !!! !|| aGlnLeuGln++ ++ValLeuValGlyLysVa 1062857 : ACAGCTTCAggt.........................agGTGTTGGTAGGAAAAGT : 1062751 29 : lLysThrTyrLeuLysThrAlaAspHisHisGlnIleThrIleLeuGlnSerTyrP : 47 ||||.!!!:!:!!|||..!|||:!! ! :!!:!!|||! !|||:!!|||.!!||| lLysAlaPheValLysValAlaAsnLysAsnGluIleLysIleIleGlnGlyTyrV 1062750 : AAAGGCGTTTGTAAAAGTGGCAAACAAGAACGAGATTAAGATAATACAAGGATACG : 1062694 48 : heAspArgTyrLysLysPhePheSerThrIleAlaPheProTyrValSerAsnGly : 65 ! ||||||||||||::!||||||.!!|||||||||.!. !||||||! !!.!||| alAspArgTyrLysArgPhePheGlyThrIleAlaMetGlyTyrValMetThrGly 1062693 : TGGATCGATATAAACGATTTTTCGGAACAATAGCAATGGGATACGTAATGACTGGA : 1062640 66 : PheSerPheThrIleMetAlaLeuCysThrLysArgGlyLeuProValAspGlyTr : 84 .!!!!!|||!:!:!: ! !!|||! !:!! !!:!! !||||||!.!|||||||| IleThrPheSerLeuAlaProLeuPheSerValGlnGluLeuProAlaAspGlyTr 1062639 : ATCACGTTCAGTTTGGCGCCTCTGTTTTCCGTACAAGAATTGCCAGCAGACGGATG : 1062583 85 : pValProPheSerIleGluArgSerGluIleTyrSerCysValPhePheValGlnS : 103 |:!!||||||||||||:!!! ! !! !:!!|||!!! !|||!:!||||||||| pIleProPheSerIleLysProLeuGlyValTyrCysLeuValTyrPheValGlnV 1062582 : GATCCCGTTTTCCATTAAACCACTGGGAGTATATTGCCTCGTATACTTTGTGCAGG : 1062526 104 : erTyrGlyIlePheGlnIleSerPheSerIlePheAlaAspPheMetIleValGly : 121 !||| !!|||.!!|||! !:!!|||!!!||| !!.!||||||||||||!.! ! alTyrCysIleLeuGlnThrAlaPheCysIleSerValAspPheMetIleAlaLeu 1062525 : TTTACTGCATTCTCCAAACAGCGTTCTGCATTAGCGTGGATTTCATGATCGCTCTT : 1062472 122 : LeuLeuCysTyrIleAlaAlaArgLeuAspIleLeuSerGluLysMetLysGlnVa : 140 |||:!! !!!:! !||||||!:!||||||||||||.!! !|||:!!::!:!!!. LeuIleSerPheSerAlaAlaLysLeuAspIleLeuGlyMetLysLeuArgLysAl 1062471 : CTAATCAGCTTCTCCGCGGCTAAATTAGACATACTGGGGATGAAACTGCGAAAAGC : 1062415 141 : lThrAspTyrAspLeuLeuThrSerCysIleLysGluHisGlnGluIleIle{Gl} : 158 !!.!! !:!!|||:!!|||..!||||||:!!|||||||||||||||||||||{||} aAsnGlyHisAspValLeuValSerCysValLysGluHisGlnGluIleIle{Gl} 1062414 : GAATGGCCACGACGTGCTGGTAAGCTGTGTCAAAGAACACCAAGAGATAATA{GG} : 1062361 159 : >>>> Target Intron 2 >>>> {y}PhePheGluAspThrLysAlaAla : 166 263 bp {|}||| ! ||||||! !|||.!!:!! ++ ++{y}PheValGluAspIleLysThrSer 1062360 : gt.........................ag{A}TTTGTGGAGGATATTAAGACATCT : 1062074 167 : ValGlnThrLeuLeuPheLysThrAsnIleThrMetGlyGlyThrValIleSerAl : 185 |||:!:||||||||||||||||||||| !|||||||||.!!.!!||||||!!!!. ValGluThrLeuLeuPheLysThrAsnAlaThrMetGlySerAlaValIleCysGl 1062073 : GTCGAgactttgttattcaaaacgaACGCCACTATGGGAAGCGCTGTGATATGCGG : 1062017 186 : aValLeuAlaLeuLeuTyr >>>> Target Intron 3 >>>> ValArgAs : 194 !..!!!! !!|||:!!||| 126 bp :!!!:!|| yThrPheProLeuIleTyr++ --IleGlnAs 1062016 : AACGTTCCCGTTGATTTACgt.........................ccATTCAGAA : 1061864 195 : nGlnSerMetValValAlaSerGlnPheLeuPheIleValLeuAlaGlyCysGlyH : 213 |||||||:!!..!||| !|||||||||||| !:!::!!|||:!!|||||||||! nGlnSerLeuThrValIleSerGlnPheLeuProLeuMetLeuSerGlyCysGlyA 1061863 : TCAGTCGCTGACAGTAATCAGTCAGTTTCTTCCTTTGATGCTATCCGGCTGCGGAC : 1061807 214 : isMetTyrValIleThrTrpProAlaAsnAspLeuLysGluSerSerLeuArgPhe : 231 ..:!:|||||||||:!!|||||||||:!!||||||||||||||| ! !|||||| rgLeuTyrValIleSerTrpProAlaAspAspLeuLysGluSerValSerArgPhe 1061806 : GACTATACGTCATCTCCTGGCCAGCAGATGATTTGAAAGAGAGCGTAAGCCGGTTC : 1061753 232 : AlaIle : 233 !:!! IleVal 1061752 : ATAGTA : 1061745 vulgar: gi|805759628|ref|XP_003700090.2| 0 233 . KQ414618.1 1062912 1061744 - 576 M 22 66 5 0 2 I 0 76 3 0 2 M 135 405 S 0 2 5 0 2 I 0 259 3 0 2 S 1 1 M 33 99 5 0 2 I 0 122 3 0 2 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1061745 1062912 576 - . gene_id 1 ; sequence gi|805759628|ref|XP_003700090.2| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1062847 1062912 . - . KQ414618.1 exonerate:protein2genome:local exon 1062847 1062912 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1062845 1062846 . - . intron_id 1 ; splice_site "gt" KQ414618.1 exonerate:protein2genome:local intron 1062767 1062846 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1062767 1062768 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1062360 1062766 . - . KQ414618.1 exonerate:protein2genome:local exon 1062360 1062766 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1062358 1062359 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1062097 1062359 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1062097 1062098 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1061997 1062096 . - . KQ414618.1 exonerate:protein2genome:local exon 1061997 1062096 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1061995 1061996 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1061871 1061996 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1061871 1061872 . - . intron_id 2 ; splice_site "CC" KQ414618.1 exonerate:protein2genome:local cds 1061745 1061870 . - . KQ414618.1 exonerate:protein2genome:local exon 1061745 1061870 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1061745 1062912 576 - . alignment_id 1 ; Query gi|805759628|ref|XP_003700090.2| ; Align 1062913 1 66 ; Align 1062767 23 405 ; Align 1062096 159 99 ; Align 1061871 192 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 253 -> 327 Target range: 1387498 -> 1387799 254 : SerPheIleLeuCysTyrIleGlyGlnLeuLeuValAspGlu >>>> Target : 268 :!!|||||||||||||||! !|||:!!! !|||..!..!:!! 79 AlaPheIleLeuCysTyrThrGlyGluTyrLeuThrSerLys++ 1387499 : GCATTCATTTTATGTTATACCGGAGAATATCTAACCTCTAAGgt............ : 1387543 269 : Intron 1 >>>> AsnAsnValValGlyMetThrSerValMetLeuAspTrpTy : 281 bp :::.!. !:!! !...:!: ... ||||| ++SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTy 1387544 : .............agagtgAACGTATTACACAATCtgtgtacaattttctttggTA : 1387659 282 : rArgLeuProIleLysLysAlaArgCysLeuValLeuIleIleAlaMetSerAsnT : 300 | !||| ! !::!:!!|||||| ::::::||||||||| |||.!. rAspLeuLysProArgGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnL 1387660 : CGATCTAAAACCTCGAGAAGCTCgtattgtattattaataatattacgaTCTCAGA : 1387716 301 : yrProMetGlnLeuThrAlaGlyLysIleValGluIleSerLeuValThrPheThr : 318 ! !:!: !|||||||||||||||.!!|||.!.:!!||||||!.!.!!|||.!! ysGluLeuIleLeuThrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAla 1387717 : AAGAGTTAATACTCACTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCT : 1387770 319 : AspIleMetLysMetSerMetAlaTyr : 327 :!:::: ... :::... ||| AsnValArgAsn***AsnPheArgTyr 1387771 : AAtgtaagaaattgaaattttcggtaT : 1387799 vulgar: gi|805765819|ref|XP_003700910.2| 253 327 . KQ414716.1 1387498 1387799 + 121 M 14 42 5 0 2 I 0 75 3 0 2 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387499 1387799 121 + . gene_id 1 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387499 1387540 . + . KQ414716.1 exonerate:protein2genome:local exon 1387499 1387540 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387541 1387542 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387541 1387619 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387618 1387619 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387620 1387799 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387799 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387499 1387799 121 + . alignment_id 1 ; Query gi|805765819|ref|XP_003700910.2| ; Align 1387499 254 42 ; Align 1387620 268 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805782670|ref|XP_012139624.1| PREDICTED: odorant receptor 13a-like isoform X1 [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 264 -> 324 Target range: 1395323 -> 1395503 265 : SerCysAspIleSerThrAlaValPheSerIleLysTrpTyrLysLeuProSerLe : 283 ||| ...||||||!.!|||!.!!:!||| ! |||||| ||| ! !!! SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 284 : uIleLysAspGluValTyrMetIleIleLeuArgSerGlnLysProCysSerIleT : 302 ! !!:! !! :!! !:!::!!!!::!!|||||||||!:!! !! !!!|||| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 303 : hrAlaGlyLysLeuTyrValMetHisLeuGluAsnPheAlaAlaValSerCysIle : 320 |||||||||||!!! ! !:!! !||||||..!|||||| !|||||| :!! hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnValSerLeuLeu 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTAAGTCTACTT : 1395489 321 : IleTyrLeuVal : 324 .!!! !! !||| PheSerTyrVal 1395490 : TTTTCTTATGTT : 1395503 vulgar: gi|805782670|ref|XP_012139624.1| 264 324 . KQ414716.1 1395323 1395503 + 101 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395503 101 + . gene_id 1 ; sequence gi|805782670|ref|XP_012139624.1| ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395503 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395503 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395503 101 + . alignment_id 1 ; Query gi|805782670|ref|XP_012139624.1| ; Align 1395324 265 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805782670|ref|XP_012139624.1| PREDICTED: odorant receptor 13a-like isoform X1 [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 258 -> 336 Target range: 1409031 -> 1409265 259 : AspIleLeuIleArgGlnSerCysAspIleSerThrAlaValPheSerIleLysTr : 277 :!!|||:!! ! !|||||| |||... !.!!!.!!:!..!.!! || AsnIleIleAspPheGlnSerLysLeuIleGlyAspThrAlaTyrGluPheLeuTr 1409032 : AATATCATTGATTTTcagagtaaactgattggagACACGGCGTATGAATTTCTTTG : 1409086 278 : pTyrLysLeuProSerLeuIleLysAspGluValTyrMetIleIleLeuArgSerG : 296 ||||!!.:!!! !||| ! !!.. :!!! :!::!!||||||||||||| pTyrAsnMetHisSerLysGluSerArgLeuMetLeuLeuValIleLeuArgSerG 1409087 : GTATAATATGCATTCGAAGGAAAGCCGACTTATGTTGCTTGTAATACTACGATCAC : 1409143 297 : lnLysProCysSerIleThrAlaGlyLysLeuTyrValMetHisLeuGluAsnPhe : 314 ||||| !! !!!:...||| ||||||... :!: !:!!|||!:!||| lnLysGlyPheThrPheThrPheGlyLysPheAlaSerLeuSerMetGluSerPhe 1409144 : AGAAAGGATTTACtttcacttttggaaaatttgcaagtCTTTCCATGGAAAGTTTT : 1409197 315 : AlaAlaValSerCysIleIleTyrLeuValLysLysIleThrPheLeuLeuLeuGl : 333 |||!.!||||||! :!! !!:!:!! ! .........:::||||||||| AlaGlyValSer***LeuTyrPheValPheAlaAsnPheAsnTyrLeuLeuLeu** 1409198 : GCAGGCGTAAGTTAATTATACTTTGTATTcgctaattttaattatttattactgtG : 1409254 334 : nSerTyrPhe : 336 !..! ! ||| *GluGlnPhe 1409255 : AGAACAGTTT : 1409265 vulgar: gi|805782670|ref|XP_012139624.1| 258 336 . KQ414716.1 1409031 1409265 + 100 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1409032 1409265 100 + . gene_id 2 ; sequence gi|805782670|ref|XP_012139624.1| ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1409032 1409265 . + . KQ414716.1 exonerate:protein2genome:local exon 1409032 1409265 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1409032 1409265 100 + . alignment_id 2 ; Query gi|805782670|ref|XP_012139624.1| ; Align 1409032 259 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805782670|ref|XP_012139624.1| PREDICTED: odorant receptor 13a-like isoform X1 [Megachile rotundata] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 264 -> 318 Target range: 1345564 -> 1345726 265 : SerCysAspIleSerThrAlaValPheSerIleLysTrpTyrLysLeuProSerLe : 283 |||! !!!:!!:..! !||| !!:!! !! !!!.|||||| ! ||||||..! SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 284 : uIleLysAspGluValTyrMetIleIleLeuArgSerGlnLysProCysSerIleT : 302 ! !! ! ..!:!! .!. !||| !|||||||||||||||! ! !:!!| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 303 : hrAlaGlyLysLeuTyrValMetHisLeuGluAsnPheAlaAlaValSer : 318 |||||||||||!!!||||||.!. ||||||!..|||!.! !|||||| hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIleValSer 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCGTGAGT : 1345726 vulgar: gi|805782670|ref|XP_012139624.1| 264 318 . KQ414782.1 1345564 1345726 + 108 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345726 108 + . gene_id 1 ; sequence gi|805782670|ref|XP_012139624.1| ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345726 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345726 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345726 108 + . alignment_id 1 ; Query gi|805782670|ref|XP_012139624.1| ; Align 1345565 265 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759258|ref|XP_012151297.1| PREDICTED: odorant receptor 83a-like isoform X1 [Megachile rotundata] Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 277 -> 416 Target range: 4394947 -> 4395361 278 : PheLeuHisArgTyrLysAsnCysIleArgPheHisGlnArgLeuValThrLeuSe : 296 :::|||||| ::: |||! !.!.! ! !! !||| !!:!:!! TrpLeuHisPhePhePheLeuThrIleLeuLeuLeuLeuLeuLeuTyrSerValVa 4394948 : tggttgcattttttttttttgacgataCTACTACTGCTACTTTTATACAGCGTTGT : 4395002 297 : rLysGluTyrAsnArgLeuPheSerSerSerMetPheValGlnMetLeuSerSerT : 315 !!!.!:: |||...|||...::: !! !!!:|||:!!|||:!:|||!!!||| lAsnAspValAsnAsnLeuLeuThrProIleIlePheMetGlnLeuLeuThrSerG 4395003 : GAACGacgtgaataatttattaacaccCATCATTTTCATGCAACTTCTTACGAGCG : 4395059 316 : hrSerMetIleCysLeuThrGlyPheGlnAlaValValValGlyGlyGlnSerSer : 333 !! ! !|||||||||!:!|||||| ||||||:!!! !..!||| .!!!!! lyIleGluIleCysLeuSerGlyPhe---AlaValIleAspAsnGlyThrGlyThr 4395060 : GAATAGAGATTTGTTTGAGTGGATTC---GCGGTGATCGATAACGGCACCGGTACC : 4395110 334 : AspIleMetLysPheGlyMetTyrLeuSerAlaAlaValSerGlnLeuLeuTyrIl : 352 |||:!!:!:||||||! ! ||||||!!!:!! !! ! !||||||||| AspLeuLeuLysPheValSerTyrLeuThrSerMetGlyValGlnLeuLeuLeuTr 4395111 : GATCTTCTCAAATTTGTGTCTTATTTAACCTCGATGGGGGTGCAACTTTTGCTATG : 4395167 353 : eCysTrpIleGlyAsnGluLeuSerTyrSerSerSerValLeuAspLysSerGlnT : 371 |||||| !|||.!. ||| ! ! ..!|||! !! !:!!! ! ! ! ! pCysTrpProGlyGluIleLeuValGlnGluSerLeuGluIleGlyHisValValT 4395168 : GTGTTGGCCTGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGTCATGTAGTCT : 4395224 372 : rpLeuSerAspTrpHisHisGluHisLeuProSerIleValGlnValPheThrLeu : 389 ::|||!:! :!!.!. ! !|||! ! ! !:!! !.!! !||| yrLeuAsnIleProTrpTyrAsnLeuProProIleTyrGlnLysGlnLeuCysLeu 4395225 : ATCTAAATATACCATGGTACAATTTACCACCGATTTATCAGAAACAACTTTGCCTG : 4395278 390 : SerThrMetSerThrArgArgThrLeuThrLeuLysAlaGlyIlePhePheValLe : 408 ! !! !!!:!!!.!!!:!!:! !! !!:!:!!! !||| !! ||| ..!|| MetIleIleArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPheGlnThrLe 4395279 : ATGATCATTAGGGCCCAACAGTATTGCAGCATTACGGCATTAACGTTTCAAACGTT : 4395335 409 : uSerLeuGluThrPheIleAlaIle : 416 ||||:!!.!.|||!!.! !|||:!! uSerIleHisThrLeuThrAlaVal 4395336 : GTCTATTCACACGTTAACAGCCGTA : 4395361 vulgar: gi|805759258|ref|XP_012151297.1| 277 416 . KQ414784.1 4394947 4395361 + 127 M 46 138 G 1 0 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4394948 4395361 127 + . gene_id 1 ; sequence gi|805759258|ref|XP_012151297.1| ; gene_orientation . KQ414784.1 exonerate:protein2genome:local cds 4394948 4395361 . + . KQ414784.1 exonerate:protein2genome:local exon 4394948 4395361 . + . insertions 0 ; deletions 1 KQ414784.1 exonerate:protein2genome:local similarity 4394948 4395361 127 + . alignment_id 1 ; Query gi|805759258|ref|XP_012151297.1| ; Align 4394948 278 138 ; Align 4395086 325 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 299 -> 350 Target range: 39971 -> 40124 300 : SerIleGlyGluThrValTyrMetThrAsnTrpTyrTyrLeuProAsnLysAspIleLeu : 319 .!!||||||:!!:!!!.!||| !||||||||| !!|||||| ||| !! !:!! GlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHisAlaVal 39972 : GGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCATGCTGTT : 40029 320 : AspLeuIleMetIleIleSerArgSerHisMetMetThrLysIleThrAlaGlyLysVal : 339 ...|||:!!!!::!:|||!!!|||:!!!!.:!! !:!!||||||||||||||| !! SerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGlyLysPhe 40030 : TCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGAAAATTC : 40089 340 : ValProMetSerPheAspThrPheAlaSerVal : 350 !|||.!.|||.!!!!: !||| !:!!||| SerProPheSerLeuGluLeuPheAsnAlaVal 40090 : AGTCCCTTTTCTCTCGAGCTGTTTAACGCTGTG : 40124 vulgar: gi|805766378|ref|XP_012135245.1| 299 350 . KQ414804.1 39971 40124 + 111 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39972 40124 111 + . gene_id 1 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39972 40124 . + . KQ414804.1 exonerate:protein2genome:local exon 39972 40124 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39972 40124 111 + . alignment_id 1 ; Query gi|805766378|ref|XP_012135245.1| ; Align 39972 300 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805782670|ref|XP_012139624.1| PREDICTED: odorant receptor 13a-like isoform X1 [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 106 -> 227 Target range: 22692 -> 23052 107 : PheProPheTyrGluMetMetTyrIlePheGlnMetLeuAlaThrAsnIleCysSerLeu : 126 .!!||| ::: ::: ::! ||| |||:!!..! !! ! !||| ! IleProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValSerAla 22693 : ATTCCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTAGCGCG : 22750 127 : IleMetLeuAlaThrAspGlyIleIleAlaIleAlaLeuLeuHisThrCysGlyHisPhe : 146 ! |||..! ||| |||... ||| ||||||..!..!|||!!.||| CysTyrLeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPhe 22751 : TGTTACCTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTT : 22810 147 : AlaValLeuLysGlnLysLeuLysAsnLeuAspSerCysIleTyrCysIleThrAsnSer : 166 !:!!|||:!! ! !:!:!! |||:!!....!! ! ! ! :!:! !!:!||| ArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSer 22811 : CGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGT : 22870 167 : GluLysAsnSerThrAsnIleLysThrAspLeuTyrAspIleLysIleGlnLeuMetHis : 186 |||!!. ||||||:!! :!! ! !!! ! ! ! ! ! |||:!!!!!! !:!! GluAsnProSerThrAsp---GluLeuTyrSerGluLysCysTyrIleLysPheLysAsn 22871 : GAAAATCCAAGCACAGAT---GAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAAT : 22927 187 : ThrIleGlnHisHisGlnIleIleLeuTrpPheCysAspAsnMetGluLysAsnPheHis : 206 !||||||!!.|||||| !:!!:!! ||||||! !..:!:|||:!! ||| CysIleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThr 22928 : TGCATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACG : 22987 207 : LeuMetLeuPheLeuGlnSerMetThrSerSerIleLeuIleCysPheValGlyPheGln : 226 :!!!!::!!.!! !||| !:!:! !|||||||||||||||||||||:!!|||!:!||| ValIleValLeuGlyGlnValLeuMetSerSerIleLeuIleCysPheIleGlyTyrGln 22988 : GTAATCGTACTCGGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAA : 23047 227 : Val : 227 ||| Val 23048 : GTA : 23052 vulgar: gi|805782670|ref|XP_012139624.1| 106 227 . KQ414828.1 22692 23052 + 144 M 66 198 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22693 23052 144 + . gene_id 1 ; sequence gi|805782670|ref|XP_012139624.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 22693 23052 . + . KQ414828.1 exonerate:protein2genome:local exon 22693 23052 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 22693 23052 144 + . alignment_id 1 ; Query gi|805782670|ref|XP_012139624.1| ; Align 22693 107 198 ; Align 22891 174 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805782670|ref|XP_012139624.1| PREDICTED: odorant receptor 13a-like isoform X1 [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 106 -> 227 Target range: 32771 -> 33131 107 : PheProPheTyrGluMetMetTyrIlePheGlnMetLeuAlaThrAsnIleCysSerLeu : 126 .!!||| ::: ::: ::! ||| |||:!!..! !! ! !.!!:!! IleProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValGlyVal 32772 : ATTCCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTGGAGTG : 32829 127 : IleMetLeuAlaThrAspGlyIleIleAlaIleAlaLeuLeuHisThrCysGlyHisPhe : 146 ! |||..! |||...|||... ||| !||||||..!..!|||!!.||| CysTyrLeuCysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPhe 32830 : TGTTACCTTTGCTttgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTT : 32889 147 : AlaValLeuLysGlnLysLeuLysAsnLeuAspSerCysIleTyrCysIleThrAsnSer : 166 !:!!|||:!! ! !:!:!! |||:!! ||| !!:!! ! |||..!!!.||| ArgIleLeuGlnTyrArgIleAlaAsnVal---SerGlyLeuSerGluIleValLysSer 32890 : CGTATACTACAATACAGAATTGCCAATGTG---TCAGGTCTAAGCGAGATAGTGAAGAGC : 32946 167 : GluLysAsnSerThrAsnIleLysThrAspLeuTyrAspIleLysIleGlnLeuMetHis : 186 .!. ! |||!!!!:!!.. !:!! ! !!! ! ! ! ! ! |||:!!!!!! !:!! AsnAspAsnThrSerThrAlaGluLeuTyrSerGluLysCysTyrIleLysPheLysAsn 32947 : AATGATAATACAAGCACGGCTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAAT : 33006 187 : ThrIleGlnHisHisGlnIleIleLeuTrpPheCysAspAsnMetGluLysAsnPheHis : 206 !||||||!!.|||||| !:!:::: ||||||::: :::|||:!! ||| CysIleGlnGlnHisGlnAlaLeuIleGluPheCysGluIleLeuGluGluValPheThr 33007 : TGCATTCAACAACATCAGGCACTaattgaattttgtgaaatactCGAAGAGGTATTCACG : 33066 207 : LeuMetLeuPheLeuGlnSerMetThrSerSerIleLeuIleCysPheValGlyPheGln : 226 :!!!!::!!.!! !||| !:!:! !! !||||||:!!|||||||||!.!|||!:!:!! ValIleValLeuGlyGlnValLeuMetPheSerIleIleIleCysPheAlaGlyTyrGlu 33067 : GTAATCGTACTCGGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAA : 33126 227 : Val : 227 ||| Val 33127 : GTA : 33131 vulgar: gi|805782670|ref|XP_012139624.1| 106 227 . KQ414828.1 32771 33131 + 130 M 50 150 G 1 0 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32772 33131 130 + . gene_id 2 ; sequence gi|805782670|ref|XP_012139624.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 32772 33131 . + . KQ414828.1 exonerate:protein2genome:local exon 32772 33131 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 32772 33131 130 + . alignment_id 2 ; Query gi|805782670|ref|XP_012139624.1| ; Align 32772 107 150 ; Align 32922 158 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805782670|ref|XP_012139624.1| PREDICTED: odorant receptor 13a-like isoform X1 [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 106 -> 226 Target range: 37835 -> 38192 107 : PheProPheTyrGluMetMetTyrIlePheGlnMetLeuAlaThrAsnIleCysSerLeu : 126 .!!||| ::: ::: ::! ||| |||:!!..! !! ! !||| ! IleProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValSerAla 37836 : ATTCCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTAGCGCG : 37893 127 : IleMetLeuAlaThrAspGlyIleIleAlaIleAlaLeuLeuHisThrCysGlyHisPhe : 146 ! |||..! ||| |||... ||| ||||||..!..!|||!!.||| CysTyrLeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPhe 37894 : TGTTACCTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTT : 37953 147 : AlaValLeuLysGlnLysLeuLysAsnLeuAspSerCysIleTyrCysIleThrAsnSer : 166 !:!!|||:!! ! !:!:!! |||:!!....!! ! ! ! :!:! !!:!||| ArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSer 37954 : CGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGT : 38013 167 : GluLysAsnSerThrAsnIleLysThrAspLeuTyrAspIleLysIleGlnLeuMetHis : 186 |||!!. ||||||:!! :!! ! !!! ! ! ! ! ! |||:!!!!!! !:!! GluAsnProSerThrAsp---GluLeuTyrSerGluLysCysTyrIleLysPheLysAsn 38014 : GAAAATCCAAGCACAGAT---GAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAAT : 38070 187 : ThrIleGlnHisHisGlnIleIleLeuTrpPheCysAspAsnMetGluLysAsnPheHis : 206 !||||||!!.|||||| !:!!:!! ||||||! !..:!:|||:!! ||| CysIleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThr 38071 : TGCATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACG : 38130 207 : LeuMetLeuPheLeuGlnSerMetThrSerSerIleLeuIleCysPheValGlyPheGln : 226 :!!!!: !.!! !||| !:!:! !! !|||||||||||||||||||||! !!:!||| ValIleAlaLeuGlyGlnValLeuMetPheSerIleLeuIleCysPheValValTyrGln 38131 : GTAATTGCACTCGGACAAGTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAA : 38190 vulgar: gi|805782670|ref|XP_012139624.1| 106 226 . KQ414828.1 37835 38192 + 124 M 66 198 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37836 38192 124 + . gene_id 3 ; sequence gi|805782670|ref|XP_012139624.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37836 38192 . + . KQ414828.1 exonerate:protein2genome:local exon 37836 38192 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 37836 38192 124 + . alignment_id 3 ; Query gi|805782670|ref|XP_012139624.1| ; Align 37836 107 198 ; Align 38034 174 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793823|ref|XP_012142572.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 569 Query range: 0 -> 198 Target range: 10897 -> 13155 1 : MetHisLeuAlaThrGlnPheArgIleLeuArgTyrArgMetGluIleLeuCysGluThr : 20 :!!||||||::! !|||||||||||||||!:!||||||:!! !! !|||! !!!:..! ValHisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspVal 10898 : GTGCATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTA : 10955 21 : ThrThrGluThrGluLysSerSerGluLysLeuIleProCysAsnGlnValThrGluSer : 40 ! !:!!! !...:::...::: ::: !:!! ! :!! ..! !..!||| GlnTyrGlnIleSerGluLysAsnMetGluSerValLeuGluAspCysThrArgArgSer 10956 : CAATATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGTAGATCT : 11015 41 : TyrAsnLysPheLysAsnCysValGlnGlnHisLeuAlaLeuIleAsnTyrCysGluAla : 60 |||.!.|||||||||!:!! !|||!:!||||||! !.!!||||||:!!|||! !||| ! TyrGluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLys 11016 : TACGAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAG : 11075 61 : LeuGluLysValPheThrSerIleThrLeuValGlnValMetValPheSerValLeuIle : 80 |||||| ! |||!:!|||!.!|||! !|||! !||||||:!::!!||||||||||||||| LeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIle 11076 : CTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATT : 11135 81 : CysLeuPheGlyTyrGlnIleLeuLeu >>>> Target Intron 1 >>>> AlaG : 91 ||||||||||||||||||||||||||| 1305 bp |||. CysLeuPheGlyTyrGlnIleLeuLeu++ ++AlaA 11136 : TGCCTCTTTGGTTATCAGATATTATTGgt.........................agGCTA : 12473 92 : lnSerSerIleGlyArgArgSerIleTyrIleSerLeuLeuValGlySerMetGlyIleL : 111 !.!!!|||:!!!.!||||||||||||!:!!!:! !|||:!! !|||:!!|||! !:!!| snThrSerLeuAlaArgArgSerIlePheMetPheLeuIleCysGlyAlaMetValLeuL 12474 : ATACTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTTTTAT : 12533 112 : euPheMetTyrThrTyrSerCysAsnGlyLeuMetValGluSerAspLysIleGlyGluA : 131 ||||||||!:!||||||||||||||| !:!!!!:! !:!!||||||!!.|||!.! | euPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAlaPheA 12534 : TGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCTTTTG : 12593 132 : laIleTyrSerThrMetTrpThrGlnMetProMetAsnGluHisGlyArgLysLeuArgL : 151 || ||||||.!!:!:|||||| ||||||||||||:!! !|||!:!||||||||| laAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeuArgH 12594 : CGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTACGGC : 12653 152 : ysAspLeuIleMetValMetLeuArgSerArgArgIleCysCysMetThrAlaTyrGlyP : 171 ! |||||||||||||||!!: !||||||||||||:!!||||||:!!|||||| !!|||| isAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsnGlyP 12654 : ATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATGGAT : 12713 172 : hePheProValSerValGluThrTyrSerThr >>>> Target Intron 2 >>>> : 182 ||||||||||||||:!!|||||||||!!!||| 359 bp hePheProValSerLeuGluThrTyrThrThr++ + 12714 : TTTTCCCTGTGTCCTTAGAAACTTATACTACGgt.........................a : 13103 183 : IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgSerArgIleGlu : 198 |||||||||||||||||||||||||||||||||||||||!:!!.!:!!||| +IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnValGlu 13104 : gattttgAGTACCGCGGCGTCGTACTTCACATTATTGAGAAATAACGTAGAA : 13155 vulgar: gi|805793823|ref|XP_012142572.1| 0 198 . KQ414828.1 10897 13155 + 569 M 89 267 5 0 2 I 0 1301 3 0 2 M 92 276 5 0 2 I 0 355 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10898 13155 569 + . gene_id 1 ; sequence gi|805793823|ref|XP_012142572.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 10898 11164 . + . KQ414828.1 exonerate:protein2genome:local exon 10898 11164 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 11165 11166 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 11165 12469 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12468 12469 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 12470 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12745 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13104 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13103 13104 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 13105 13155 . + . KQ414828.1 exonerate:protein2genome:local exon 13105 13155 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10898 13155 569 + . alignment_id 1 ; Query gi|805793823|ref|XP_012142572.1| ; Align 10898 1 267 ; Align 12470 90 276 ; Align 13105 182 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793823|ref|XP_012142572.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 447 Query range: 0 -> 198 Target range: 3456 -> 6468 1 : MetHisLeuAlaThrGlnPheArgIleLeuArgTyrArgMetGluIleLeuCysGluThrTh : 21 :!:||| !|||||||||||||||||||||!:!||||||:!!..!! !:!!|||! .!!!. LeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAs 3457 : CTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAA : 3517 22 : rThrGluThrGluLysSerSerGluLysLeuIleProCysAsnGlnValThrGluSerTyrA : 42 ! !...!:::::||| |||:::||| |||! !|||..! !|||!!!||| nGluArgSerAspLysIleSerLysLys---ThrProSerAsnSer---AspGluCysTyrA 3518 : CGAACGTAgcgataaaatttcgaaaaaa---acaCCGTCCAATTCG---GACGAATGCTACG : 3574 43 : snLysPheLysAsnCysValGlnGlnHisLeuAlaLeuIleAsnTyrCysGluAlaLeuGlu : 62 !|||||||||||||||:!!|||||||||! !|||||||||.!.||||||.!. !|||:!! laLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnLysLeuGln 3575 : CTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACAAACTTCAA : 3634 63 : LysValPheThrSerIleThrLeuValGlnValMetValPheSerValLeuIleCysLeuPh : 83 :!!|||||| !! !.!!..!|||!.!||||||:!!:!!||||||:!!|||!!:|||||| GluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAs 3635 : GAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGA : 3697 84 : eGlyTyrGlnIleLeuLeu >>>> Target Intron 1 >>>> AlaGlnSerSerIl : 94 !|||||| :!::!!:!! 457 bp ! !.!.!!! !!|| pGlyTyr---LeuValMet++ ++GluAspThrProIl 3698 : TGGATAT---TTGGTGATGgt.........................agGAAGATACTCCCAT : 4184 95 : eGlyArgArgSerIleTyrIleSerLeuLeuValGlySerMetGlyIleLeuPheMetTyrT : 115 | !!:!||| !! !!:!:!:! !! !|||..!|||!!!:!! !! !|||!!.|||!:!| eMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuMetPheT 4185 : TATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGATGTTCA : 4247 116 : hrTyrSerCysAsnGlyLeuMetValGluSerAspLysIleGlyGluAlaIleTyrSerThr : 135 |||||||||||:!! !!|||!!: !|||||| !!.:!:!.!.!.|||||||||..! ! hrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIleTyrAspCys 4248 : CCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATATACGACTGC : 4307 136 : MetTrpThrGlnMetProMetAsnGluHisGlyArgLysLeuArgLysAspLeuIleMetVa : 156 !|||! !!!.:!!||||||:!!..! !||||||! !|||||||||||||||! !.!.|| SerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAspLeuThrPheVa 4308 : TCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGACATTCGT : 4370 157 : lMetLeuArgSerArgArgIleCysCysMetThrAlaTyrGlyPhePheProValSerValG : 177 |!!: !||||||||| ! !||||||:!:||||||! !||||||||||||||||||:!!| lIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePheProValSerLeuG 4371 : CATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGG : 4433 178 : luThrTyrSerThr >>>> Target Intron 2 >>>> IleLeuSerThrAlaAlaS : 188 ||||||||!!!:!! 1970 bp :!!:!!|||||||||!.!| luThrTyrThrSer++ ++ValIleSerThrAlaValS 4434 : AAACGTACACTTCGgt.........................agGTTATAAGTACAGCAGTGT : 6436 189 : erTyrPheThrLeuLeuArgSerArgIleGlu : 198 ||||||||||||||||||||..!||||||||| erTyrPheThrLeuLeuArgGlnArgIleGlu 6437 : CGTACTTCACACTGTTAAGGCAACGTATAGAG : 6468 vulgar: gi|805793823|ref|XP_012142572.1| 0 198 . KQ414828.1 3456 6468 + 447 M 30 90 G 1 0 M 5 15 G 1 0 M 48 144 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 3457 6468 447 + . gene_id 2 ; sequence gi|805793823|ref|XP_012142572.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 3457 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3457 3714 . + . insertions 0 ; deletions 3 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6468 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6468 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 3457 6468 447 + . alignment_id 2 ; Query gi|805793823|ref|XP_012142572.1| ; Align 3457 1 90 ; Align 3547 32 15 ; Align 3562 38 144 ; Align 3706 87 9 ; Align 4172 90 276 ; Align 6418 182 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793823|ref|XP_012142572.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 405 Query range: 0 -> 198 Target range: 22791 -> 24190 1 : MetHisLeuAlaThrGlnPheArgIleLeuArgTyrArgMetGluIleLeuCysGluThr : 20 :!:|||:!!||| !|||||||||||||||!:!||||||!!:! ! !:!!! ! ! LeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeu 22792 : CTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTA : 22849 21 : ThrThrGluThrGluLysSerSerGluLysLeuIleProCysAsnGlnValThrGluSer : 40 !:! ! !..!:!!!..|||..!.!. ! !! ! ! ! ! !:!!!!! SerGluIleValLysSerSerGluAsnProSerThrAspGluLeuTyrSerGluLysCys 22850 : AGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAATTATACTCAGAGAAATGT : 22909 41 : TyrAsnLysPheLysAsnCysValGlnGlnHisLeuAlaLeuIleAsnTyrCysGluAla : 60 |||! !|||||||||||||||:!!|||||||||! !|||||||||.!.!:!|||! !.!! TyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThr 22910 : TACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACA : 22969 61 : LeuGluLysValPheThrSerIleThrLeuValGlnValMetValPheSerValLeuIle : 80 ||||||:!!||||||||| !|||..!|||! !||||||:!::!!! !|||:!!|||||| LeuGluGluValPheThrValIleValLeuGlyGlnValLeuMetSerSerIleLeuIle 22970 : CTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCTAATGTCTAGCATATTAATT : 23029 81 : CysLeuPheGlyTyrGlnIleLeuLeu >>>> Target Intron 1 >>>> AlaG : 91 |||!!!.!!|||||||||:!!|||||| 492 bp !: CysPheIleGlyTyrGlnValLeuLeu++ ++IleL 23030 : TGCTTCATCGGGTATCAAGTACTCCTGgt.........................agATAA : 23554 92 : lnSerSerIleGlyArgArgSerIleTyrIleSerLeuLeuValGlySerMetGlyIleL : 111 !!! !|||.!!! ! !||| ! !!:! !!!!!!|||:!! !.!!|||.!! !| ysLeuSerPheGluSerArgValAlaPheAlaCysPheLeuMetMetGlyMetSerGlnL 23555 : AGTTATCATTTGAATCGCGCGTTGCTTTCGCGTGCTTCTTGATGATGGGCATGAGTCAAC : 23614 112 : euPheMetTyrThrTyrSerCysAsnGlyLeuMetValGluSerAspLysIleGlyGluA : 131 ||!::|||!:!||||||||||||:!! !!:!!! ..!|||||| !!.|||!.!|||: euTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluS 23615 : TATGGATGTTCACGTATAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAAT : 23674 132 : laIleTyrSerThrMetTrpThrGlnMetProMetAsnGluHisGlyArgLysLeuArgL : 151 !!:!:|||:!! ! |||! !.!.:!:||||||:!!:!! !|||!:! !||||||| erValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgL 23675 : CTGTGTACGCTGGACCATGGATAAATTTACCAATGGACAAATTTGGAAAACTGCTAAGAA : 23734 152 : ysAspLeuIleMetValMetLeuArgSerArgArgIleCysCysMetThrAlaTyrGlyP : 171 ||!!:||| !|||:!!!!:||||||:!!|||||| !! !..!:!!||||||! !|||| ysGluLeuGlnMetLeuIleLeuArgAlaArgArgProSerAlaLeuThrAlaCysGlyP 23735 : AAGAATTGCAAATGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGAT : 23794 172 : hePheProValSerValGluThrTyrSerThr >>>> Target Intron 2 >>>> : 182 ||||| !!:!!|||:!!||||||!:!!!!! ! 313 bp hePheSerIleSerLeuGluThrPheThrLys++ + 23795 : TCTTTTCTATATCTCTCGAAACCTTTACTAAGgt.........................a : 24138 183 : IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgSerArgIleGlu : 198 |||:!!||||||:!! !||||||||||||||||||!:!..! !!|||||| +IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnCysIleGlu 24139 : gATCATGAGTACATCAATGTCGTATTTCACATTATTAAAACAATGTATCGAG : 24190 vulgar: gi|805793823|ref|XP_012142572.1| 0 198 . KQ414828.1 22791 24190 + 405 M 89 267 5 0 2 I 0 488 3 0 2 M 92 276 5 0 2 I 0 309 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22792 24190 405 + . gene_id 3 ; sequence gi|805793823|ref|XP_012142572.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22792 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22792 23058 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23059 23060 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23059 23550 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 23549 23550 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 23551 23826 . + . KQ414828.1 exonerate:protein2genome:local exon 23551 23826 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23827 23828 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23827 24139 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 24138 24139 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 24140 24190 . + . KQ414828.1 exonerate:protein2genome:local exon 24140 24190 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22792 24190 405 + . alignment_id 3 ; Query gi|805793823|ref|XP_012142572.1| ; Align 22792 1 267 ; Align 23551 90 276 ; Align 24140 182 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793823|ref|XP_012142572.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 396 Query range: 0 -> 198 Target range: 32870 -> 34310 1 : MetHisLeuAlaThrGlnPheArgIleLeuArgTyrArgMetGluIleLeuCysGluThr : 20 :!:|||:!!||| !|||||||||||||||!:!||||||!!:! ! !:!!! ! ! LeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeu 32871 : CTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTA : 32928 21 : ThrThrGluThrGluLysSerSerGluLysLeuIleProCysAsnGlnValThrGluSer : 40 !:! ! !..!:!!!..!:!..!.!.! ! !! !! ! ! !:!!!!! SerGluIleValLysSerAsnAspAsnThrSerThrAlaGluLeuTyrSerGluLysCys 32929 : AGCGAGATAGTGAAGAGCAATGATAATACAAGCACGGCTGAATTATACTCAGAGAAATGT : 32988 41 : TyrAsnLysPheLysAsnCysValGlnGlnHisLeuAlaLeuIleAsnTyrCysGluAla : 60 |||! !|||||||||||||||:!!|||||||||! !|||||||||...:::|||||| TyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysGluIle 32989 : TACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTaattgaattttgtgaaata : 33048 61 : LeuGluLysValPheThrSerIleThrLeuValGlnValMetValPheSerValLeuIle : 80 ||||||:!!||||||||| !|||..!|||! !||||||:!::!!||||||:!!:!!||| LeuGluGluValPheThrValIleValLeuGlyGlnValLeuMetPheSerIleIleIle 33049 : ctCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTAATGTTTAGCATAATAATT : 33108 81 : CysLeuPheGlyTyrGlnIleLeuLeu >>>> Target Intron 1 >>>> AlaG : 91 |||!!! !||||||:!!:!!|||||| 406 bp ! CysPheAlaGlyTyrGluValLeuLeu++ ++IleT 33109 : TGCTTCGCCGGGTATGAAGTACTCCTGgt.........................agATAA : 33547 92 : lnSerSerIleGlyArgArgSerIleTyrIleSerLeuLeuValGlySerMetGlyIleL : 111 !! ! !!.!!! ! !||| ! !!:!! !!!!!!|||:!! !.!!:!!.!! !| hrLeuProPheGluSerArgValAlaPheThrCysPheLeuIleThrGlyValSerGlnL 33548 : CGTTACCATTTGAATCGCGCGTTGCTTTCACGTGCTTCTTGATTACGGGCGTGAGTCAAC : 33607 112 : euPheMetTyrThrTyrSerCysAsnGlyLeuMetValGluSerAspLysIleGlyGluA : 131 ||!::|||!:!||||||||||||||| !!:!!! ..!|||||| !!.|||!.!|||: euTrpMetPheThrTyrSerCysAsnCysIleThrThrGluSerLeuAsnIleAlaGluS 33608 : TATGGATGTTCACGTACAGTTGCAATTGCATAACAACAGAAAGCCTGAACATCGCTGAAT : 33667 132 : laIleTyrSerThrMetTrpThrGlnMetProMetAsnGluHisGlyArgLysLeuArgL : 151 !!:!:|||:!! ! |||! !.!.:!:||||||:::::: |||::: ||||||| erValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgL 33668 : CTGTGTACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaactgCTAAGAA : 33727 152 : ysAspLeuIleMetValMetLeuArgSerArgArgIleCysCysMetThrAlaTyrGlyP : 171 |||||||| !:!!:!!!!:||||||:!!|||||| !! !..!:!!||||||! !|||| ysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerAlaLeuThrAlaCysGlyP 33728 : AGGATTTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGAT : 33787 172 : hePheProValSerValGluThrTyrSerThr >>>> Target Intron 2 >>>> : 182 ||||| !!:!!!!!:!!||||||!:!!!!! ! 440 bp hePheSerIleThrLeuGluThrPheThrLys++ + 33788 : TCTTTTCTATAACTCTCGAAACCTTTACTAAGgt.........................a : 34258 183 : IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgSerArgIleGlu : 198 |||:!!||||||:!! !||||||||||||||||||!:!..!!!! !||| +IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnSerAlaGlu 34259 : gATCATGAGTACATCAATGTCGTATTTCACCCTACTAAAACAAAGTGCCGAG : 34310 vulgar: gi|805793823|ref|XP_012142572.1| 0 198 . KQ414828.1 32870 34310 + 396 M 89 267 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32871 34310 396 + . gene_id 4 ; sequence gi|805793823|ref|XP_012142572.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32871 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32871 33137 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 2 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34310 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34310 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32871 34310 396 + . alignment_id 4 ; Query gi|805793823|ref|XP_012142572.1| ; Align 32871 1 267 ; Align 33544 90 276 ; Align 34260 182 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793823|ref|XP_012142572.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 333 Query range: 0 -> 185 Target range: 18105 -> 19644 1 : MetHisLeuAlaThrGlnPheArgIleLeuArgTyrArgMetGluIleLeuCysGluThr : 20 :!!||| !|||||||||||||||:!!|||!:!|||||||||! !! !:!! !!!: ! LeuHisAlaAlaThrGlnPheArgValLeuGlnTyrArgMetAlaAsnMetThrAspLeu 18106 : TTGCACGCGGCTACTCAGTTTCGAGTATTGCAATACCGAATGGCGAATATGACCGATTTA : 18163 21 : ThrThrGluThrGluLysSerSerGluLysLeuIleProCysAsnGln<-><-><->Val : 37 ! ! ::: ...|||... ... !! ! ! !:!..! !.! LysAspLysGluArgLysGluArgAsnMetLysThrSerValSerSerAlaCysPheAla 18164 : AAGGacaaagagaggaaagagagaaatatgaAGACAAGTGTGAGTTCGGCGTGCTTTGCA : 18223 38 : ThrGluSerTyrAsnLysPheLysAsnCysValGlnGlnHisLeuAlaLeuIleAsnTyr : 57 ||||||!!!|||||| .!!|||:!!! !:!!::!||||||! ! !|||||| !||| ThrGluCysTyrAsnValLeuLysAspTyrIleArgGlnHisGlnAsnLeuIleAlaTyr 18224 : ACAGAATGTTACAACGTTCTCAAAGATTATATCAGACAGCATCAGAACCTGATTGCTTAT : 18283 58 : CysGluAlaLeuGluLysValPheThrSerIleThrLeuValGlnValMetValPheSer : 77 |||.!. !|||||||||||||||!.!! !|||..!|||! !|||:!!:!::!!|||||| CysAsnLysLeuGluLysValPheAsnIleIleValLeuGlyGlnLeuLeuMetPheSer 18284 : TGCAACAAACTCGAGAAAGTGTTCAATATCATTGTTCTGGGGCAATTGTTAATGTTCAGC : 18343 78 : ValLeuIleCysLeuPheGlyTyrGln >>>> Target Intron 1 >>>> IleL : 88 :!!|||||||||||| !|||!:!||| 975 bp :!!| MetLeuIleCysLeuAspGlyPheGln-+ +-ValL 18344 : ATGTTGATCTGTCTCGATGGATTTCAGat.........................acGTTT : 19351 89 : euLeuAlaGlnSerSerIleGlyArgArgSerIleTyrIleSerLeuLeuValGlySerM : 108 ||! !|||.!.!!! !!! ! !!! !||| !|||!:!|||! !! !:!!! !!.!!!!| euGlnAlaAsnThrProThrArgThrArgLeuIlePheIlePheHisIleGlyAlaCysM 19352 : TACAGGCAAATACACCTACCAGAACCCGACTGATTTTCATCTTTCACATAGGAGCATGCA : 19411 109 : etGlyIleLeuPheMetTyrThrTyrSerCysAsnGlyLeuMetValGluSerAspLysI : 128 || !! !|||.!.|||!:!||||||||||||:!! !!:!!!!: !|||||| !..! etCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSerThrSerT 19412 : TGTGTCAATTGCTGATGTTTACCTACAGCTGCGACTGCATCATAAGAGAAAGCACGAGCA : 19471 129 : leGlyGluAlaIleTyrSerThrMetTrpThrGlnMetProMetAsnGluHisGlyArgL : 148 !!.!||||||:!:|||||| ! ||||||! :!:||||||!:!! ! !!|||!:!! hrAlaGluAlaValTyrSerGlyProTrpThrLeuLeuProMetSerAlaAspGlyLysM 19472 : CCGCCGAGGCGGTGTACAGCGGTCCCTGGACACTTTTACCAATGAGCGCAGACGGAAAAA : 19531 149 : ysLeuArgLysAspLeuIleMetValMetLeuArgSerArgArgIleCysCysMetThrA : 168 !:!!||||||||||||!!::!:|||!!::!!||||||!!! ! !||||||:!!|||| etIleArgLysAspLeuMetLeuValIleMetArgSerSerValProCysCysLeuThrA 19532 : TGATAAGGAAAGATTTGATGCTCGTTATCATGAGATCGAGCGTACCTTGTTGCTTGACAG : 19591 169 : laTyrGlyPhePheProValSerValGluThrTyrSerThrIleLeuSerThr : 185 || ||||||||| !||||||:!!|||||||||!!! !:!!:!! !||| laArgGlyPhePheValValSerLeuGluThrTyrThrGlyValIleValThr 19592 : CCAGAGGATTCTTCGTCGTGTCTTTAGAAACGTACACAGGGGTAATCGTCACC : 19644 vulgar: gi|805793823|ref|XP_012142572.1| 0 185 . KQ414828.1 18105 19644 + 333 M 36 108 G 0 9 M 50 150 5 0 2 I 0 971 3 0 2 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 18106 19644 333 + . gene_id 5 ; sequence gi|805793823|ref|XP_012142572.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 18106 18372 . + . KQ414828.1 exonerate:protein2genome:local exon 18106 18372 . + . insertions 9 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18373 18374 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 18373 19347 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 19346 19347 . + . intron_id 0 ; splice_site "AC" KQ414828.1 exonerate:protein2genome:local cds 19348 19644 . + . KQ414828.1 exonerate:protein2genome:local exon 19348 19644 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 18106 19644 333 + . alignment_id 5 ; Query gi|805793823|ref|XP_012142572.1| ; Align 18106 1 108 ; Align 18223 37 150 ; Align 19348 87 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793823|ref|XP_012142572.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 192 Query range: 0 -> 89 Target range: 37934 -> 38201 1 : MetHisLeuAlaThrGlnPheArgIleLeuArgTyrArgMetGluIleLeuCysGluThr : 20 :!:|||:!!||| !|||||||||||||||!:!||||||!!:! ! !:!!! ! ! LeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeu 37935 : CTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTA : 37992 21 : ThrThrGluThrGluLysSerSerGluLysLeuIleProCysAsnGlnValThrGluSer : 40 !:! ! !..!:!!!..|||..!.!. ! !! ! ! ! ! !:!!!!! SerGluIleValLysSerSerGluAsnProSerThrAspGluLeuTyrSerGluLysCys 37993 : AGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAATTATACTCAGAGAAATGT : 38052 41 : TyrAsnLysPheLysAsnCysValGlnGlnHisLeuAlaLeuIleAsnTyrCysGluAla : 60 |||! !|||||||||||||||:!!|||||||||! !|||||||||.!.!:!|||! !.!! TyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThr 38053 : TACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACA : 38112 61 : LeuGluLysValPheThrSerIleThrLeuValGlnValMetValPheSerValLeuIle : 80 ||||||:!!||||||||| !|||.!!|||! !||||||:!::!!||||||:!!|||||| LeuGluGluValPheThrValIleAlaLeuGlyGlnValLeuMetPheSerIleLeuIle 38113 : CTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCTAATGTTTAGCATACTAATT : 38172 81 : CysLeuPheGlyTyrGlnIleLeuLeu : 89 |||!!! !!! !|||||| !|||||| CysPheValValTyrGlnAlaLeuLeu 38173 : TGCTTCGTCGTGTATCAAGCACTCCTG : 38201 vulgar: gi|805793823|ref|XP_012142572.1| 0 89 . KQ414828.1 37934 38201 + 192 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37935 38201 192 + . gene_id 6 ; sequence gi|805793823|ref|XP_012142572.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37935 38201 . + . KQ414828.1 exonerate:protein2genome:local exon 37935 38201 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37935 38201 192 + . alignment_id 6 ; Query gi|805793823|ref|XP_012142572.1| ; Align 37935 1 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793823|ref|XP_012142572.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 179 Query range: 110 -> 182 Target range: 28568 -> 28784 111 : LeuPheMetTyrThrTyrSerCysAsnGlyLeuMetValGluSerAspLysIleGlyGlu : 130 |||!::|||!:!||||||||||||:!! !!:!!! ..!|||||| !!.|||!.!||| LeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGlu 28569 : CTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAA : 28626 131 : AlaIleTyrSerThrMetTrpThrGlnMetProMetAsnGluHisGlyArgLysLeuArg : 150 :!!:!!|||:!! ! |||! !.!.:!:||||||:::::: |||::: |||||| SerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArg 28627 : TCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaactgCTAAGA : 28686 151 : LysAspLeuIleMetValMetLeuArgSerArgArgIleCysCysMetThrAlaTyrGly : 170 ||||||||| !:!!:!!!!:||||||:!!|||||| !! !! !:!!||||||! !||| LysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThrAlaCysGly 28687 : AAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGA : 28746 171 : PhePheProValSerValGluThrTyrSerThrIle : 182 |||||| !!:!!|||:!!||||||!:!!!!! !:!! PhePheSerIleSerLeuGluThrPheThrLysVal 28747 : TTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 28784 vulgar: gi|805793823|ref|XP_012142572.1| 110 182 . KQ414828.1 28568 28784 + 179 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28569 28784 179 + . gene_id 7 ; sequence gi|805793823|ref|XP_012142572.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28569 28784 . + . KQ414828.1 exonerate:protein2genome:local exon 28569 28784 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28569 28784 179 + . alignment_id 7 ; Query gi|805793823|ref|XP_012142572.1| ; Align 28569 111 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793823|ref|XP_012142572.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 179 Query range: 110 -> 182 Target range: 38544 -> 38760 111 : LeuPheMetTyrThrTyrSerCysAsnGlyLeuMetValGluSerAspLysIleGlyGlu : 130 |||!::|||!:!||||||||||||:!! !!:!!! ..!|||||| !!.|||!.!||| LeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGlu 38545 : CTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAA : 38602 131 : AlaIleTyrSerThrMetTrpThrGlnMetProMetAsnGluHisGlyArgLysLeuArg : 150 :!!:!!|||:!! ! |||! !.!.:!:||||||:::::: |||::: |||||| SerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArg 38603 : TCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaactgCTAAGA : 38662 151 : LysAspLeuIleMetValMetLeuArgSerArgArgIleCysCysMetThrAlaTyrGly : 170 ||||||||| !:!!:!!!!:||||||:!!|||||| !! !! !:!!||||||! !||| LysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThrAlaCysGly 38663 : AAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGA : 38722 171 : PhePheProValSerValGluThrTyrSerThrIle : 182 |||||| !!:!!|||:!!||||||!:!!!!! !:!! PhePheSerIleSerLeuGluThrPheThrLysVal 38723 : TTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 38760 vulgar: gi|805793823|ref|XP_012142572.1| 110 182 . KQ414828.1 38544 38760 + 179 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38545 38760 179 + . gene_id 8 ; sequence gi|805793823|ref|XP_012142572.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38545 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38545 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38545 38760 179 + . alignment_id 8 ; Query gi|805793823|ref|XP_012142572.1| ; Align 38545 111 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759615|ref|XP_012152339.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 519 Query range: 0 -> 233 Target range: 5294 -> 4042 1 : MetPheGlnAsnThrSerProGluLysAlaIleThrPheThrArgPheCysLeuAlaLeuSe : 21 |||!!.:!! !! !!|||||||||!:!||||||:!!.!!..!!.! !! ! !|||!!!!! MetLeuLysTyrProSerProGluArgAlaIleSerLeuValHisValIleThrAlaPheTh 5294 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCACGTTATCACGGCTTTTAC : 5234 22 : rLeuPheLeuProLeuSerSerArgAlaThrLysLeuGlnThrIleCysTyrLysSerLeuL : 42 !! !! !! !|||||| !!|||! !|||||||||! !! !..!:!! !:!|||! !|||! rCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuA 5233 : CTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGA : 5171 43 : ysPheIleValValLeuSerSerPhePheLeuPheLeuProIleIleAsnSerLeuCysMet : 62 :!! !.!!:!!:!!|||!:!:!!!!. ! ||||||||||||:!::!! !!:!!||| !:!! rgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHisVal 5170 : GATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTG : 5111 63 : TyrGln<->AspProThrAsnValSerGlnSerValCysPheLeuMetGlyGluPheGlnLe : 82 :!!!:! ||| !! !||||||:!!:!!:!!!.!|||.!. !:!:!.! |||:: HisArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGlnIl 5110 : CATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCctcgtgcaaat : 5048 83 : uIleSerAsnThrIleIleGlyThrValGlnTyrAspArgLeuGln >>>> Target In : 98 :... ...|||.!!:!! !!! !! !|||||||||!.!!!!||| 550 ePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGln++ 5047 : atttttccagacTTTCGTTTGCATCGGCCAATACGATCATTTTCAGgt.............. : 4998 99 : tron 1 >>>> GluValIleGluValMetGluAlaCysCysLysAsnAlaThrLeuHisG : 114 bp :!!:!!||||||! !|||:!! !||||||:!!!..|||! !! !:!!| ++LysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrG 4997 : ...........agAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACG : 4402 115 : luLysValValPheGlnArgTyrIleAsnThrTyrSerProPheTyrGlySerSerAlaIle : 134 ||!:!! !|||||||||||||||:!!|||! !:!:||| |||||| ::: !!:!! ! luArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSer 4401 : AAAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCA : 4342 135 : TrpPheTyrValThrGlyMetIleLeuIleLeuGlyThrLeuValSerSerGluProPhePr : 155 |||||||||:!!|||!.!!!:|||:!!:!!||||||!:!|||:!!! !|||!!:|||||||| TrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPhePr 4341 : TGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCC : 4279 156 : oThrAsnAlaGluTyrProPheProValAspTyrGlnProLeuGluThrIleValPheLeuH : 176 ||||||||||! !|||||||||||||||:!!!:!:!!||||||..!!:!|||:!!|||:!!| oThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetH 4278 : AACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGC : 4216 177 : isGlnSerLeuValLeuIleGlnCysCysAlaHisAlaCysIleAsnMetPheCysAlaPhe : 196 ||||||||!!!||| !|||||||||..!||||||||| !!!!:|||:!!.!!! !|||.!. isGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeu 4215 : ACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTG : 4156 197 : LeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuLysMetGluLeuArgGluValMetAs : 217 ||||||||||||.!!.!!|||||||||||||||||| !! !|||||||||.!.|||! :! LeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAs 4155 : TTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGA : 4093 218 : nIleGluGlnPheValMetCysValGluLysTyrTyrThrValLysArg : 233 !|||||| !.!.:!!! ! !!:!!:!!||||||! ||||||::!||| pIleGluThrLeuIleLysSerMetLysLysTyrSerThrValArgArg 4092 : TATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: gi|805759615|ref|XP_012152339.1| 0 233 . LHQN01020543.1 5294 4042 - 519 M 64 192 G 0 3 M 33 99 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 5294 519 - . gene_id 1 ; sequence gi|805759615|ref|XP_012152339.1| ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 5001 5294 . - . LHQN01020543.1 exonerate:protein2genome:local exon 5001 5294 . - . insertions 3 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 4999 5000 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 4451 5000 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 4451 4452 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 4043 4450 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4450 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 5294 519 - . alignment_id 1 ; Query gi|805759615|ref|XP_012152339.1| ; Align 5295 1 192 ; Align 5100 65 99 ; Align 4451 98 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759615|ref|XP_012152339.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 303 Query range: 267 -> 371 Target range: 1892 -> 1422 268 : GlnProLeuAlaThrLysGlyGlnTyrLeuProValValGlyThrAlaLeuLeuGluValPh : 288 ||||||!!!|||..!|||!.!|||!:!||| !!||| !|||||||||||||||||||||.! GlnProPheAlaValLysAlaGlnPheLeuThrValSerGlyThrAlaLeuLeuGluValLe 1892 : CAACCGTTCGCTGTGAAAGCTCAGTTTCTTACTGTGAGTGGAACCGCTTTGCTGGAAGTGCT : 1832 289 : eValIleAlaTrpProAlaAspHisLeuLeuAspMet >>>> Target Intron 1 >> : 301 !:!! !:!! |||||||||||||||:!!|||||| 82 bp uMetCysSerLeuProAlaAspHisLeuIleAspMet++ 1831 : TATGTGTTCACTACCAGCTGACCATTTGATAGATATGgt....................... : 1791 302 : >> SerGluAsnValMetHisGluIleTyrLysSerLysTrpTyrAspGlnAspValArgM : 320 |||||||||:!!|||!!.! !||||||:!!||||||||||||!!:!:!...::::::: ++SerGluAsnIleMetGlnGlyIleTyrGluSerLysTrpTyrGluArgSerLeuLysI 1790 : ..agAGCGAGAACATAATGCAAGGAATATATGAATCAAAATGGTACGAACGAtctctaaaaa : 1654 321 : etGlnArgAspValArgValMetMetLeuProGlnLysAlaValAlaIleLysValProCys : 340 ::|||:::..!..! !:!!|||:!! !||||||... !!|||.!!:!!|||:!! !||| leGlnLysSerThrValLeuMetLeuThrProGlnSerProValThrValLysIleLysCys 1653 : ttcaaaagtcTACAGTCCTCATGTTGACTCCTCAATCTCCGGTGACAGTAAAAATCAAGTGC : 1594 341 : LeuIleSerThrLeuSerLeuAsnTyrPheCysSer >>>> Target Intron 2 >>> : 353 |||||| !!...||||||||||||::::::|||||| 76 bp LeuIleProValLeuSerLeuAsnPheTyrCysSer++ 1593 : CTCATTCCAGttctttctttgaatttttactgCTCGgt........................ : 1553 354 : > PheIleSerAsnValPheSerLeuPheSerValLeuArgIleAlaIleLeuLysAsp : 371 !:!:!!|||||||||||||||||||||!!!!.!||||||||||||!!::!!!!.||| ++TyrValSerAsnValPheSerLeuPheThrAlaLeuArgIleAlaMetIleAsnAsp 1552 : .agTACGTCTCAAATGTGTTCTCTTTATTTACCGCTTTAAGAATAGCCATGATAAATGat : 1423 vulgar: gi|805759615|ref|XP_012152339.1| 267 371 . LHQN01020543.1 1892 1422 - 303 M 33 99 5 0 2 I 0 78 3 0 2 M 52 156 5 0 2 I 0 72 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 1423 1892 303 - . gene_id 2 ; sequence gi|805759615|ref|XP_012152339.1| ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 1794 1892 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1794 1892 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 1792 1793 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 1712 1793 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 1712 1713 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 1556 1711 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1556 1711 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 1554 1555 . - . intron_id 2 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 1480 1555 . - . intron_id 2 LHQN01020543.1 exonerate:protein2genome:local splice3 1480 1481 . - . intron_id 1 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 1423 1479 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1423 1479 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 1423 1892 303 - . alignment_id 2 ; Query gi|805759615|ref|XP_012152339.1| ; Align 1893 268 99 ; Align 1712 301 156 ; Align 1480 353 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1188 Query range: 1 -> 405 Target range: 217126 -> 219803 2 : GlnLysAlaThrAlaLysAlaGluGlnGluTyrLeuLysAsnValAspLeuSerValA : 21 :!!:!! !:!! !!!:!.!!!!: ! |||||| ||||||::::::||||||:!!! LysGluGlnSerProArgThrAspTyrGluTyrGluLysAsnIleAsnLeuSerIleG 217127 : AAGGAACAATCCCCCAGAACCGACTACGAgtacgagaaaaatataaatctcaGTATCC : 217184 22 : rgLeuAsnArgTrpIleLeuLysProIleAlaAlaTrpProGluSerSerThrValSe : 40 :!! !|||||||||:!:|||||||||!!:!.! !||||||.!.||| !!|||..!!! lnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnSerArgThrThrTh 217185 : AATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACTCACGTACCACCAC : 217241 41 : rProIleLysLysTyrLeuGlyTrpPheValHisIleIleCysTyrSerLeuLeuSer : 59 ! ! !::!||| !||| ! .!.:!!:!! !:!!||||||.!!|||:!!||| rArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSer 217242 : CAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTACGGTTTGATAAGC : 217298 60 : PheLeuPheValProCysLeuThrPheLeuIleLeuGluValAsnAspThrTyrAsnA : 79 ||||||||||||||||||! !! !!:!:!!.!!|||||||||.!.||| !|||:!!! PheLeuPheValProCysSerMetTyrValPheLeuGluValGluAspLeuTyrAspL 217299 : TTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAGATCTCTACGACA : 217358 80 : rgIleLysLeuIleGlyProLeuSerPhePheLeuMetSerTyrLeuLysTyrTyrLe : 98 :!:!:||||||.!!|||||||||! !|||! !:!!|||:!!!:!:!!|||||||||! ysLeuLysLeuPheGlyProLeuIlePheCysValMetAlaPheValLysTyrTyrSe 217359 : AGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTC : 217415 99 : uMetLeuLeuHisLysAsnAspIleLeuLysCysValGlnGlnValGlnArgAspTrp : 117 !:!!:!!:!!|||||| ||||||! !:!!||||||::!::!:!!:!!||||||||| rLeuIleValHisLysAlaAspIleArgGluCysValArgArgIleGluArgAspTrp 217416 : TCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGG : 217472 118 : AlaAsnAlaArgHisLeuAsnAspArgAsnIleMetGlyMetAsnAlaAsnTyrGlyA : 137 !|||!.!||| ! !!!.||||||.!. ||| !:!!|||||||||!:!|||| ArgAsnValArgCysGluLysAspArgGluAlaMetIleValAsnAlaAsnPheGlyA 217473 : AGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCC : 217532 138 : rgLysLeuValValValSerAlaPhePheMetTyrSerSerTyrIlePhePheTyrIl : 156 |||||||||||:!!:!!!!!.!!|||||||||||||||...::::::|||:::||||| rgLysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIl 217533 : GTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcgttttttattacat : 217589 157 : eAlaValProIleThrValGlyArgIleProAlaGlnAspGlyAsnPheThrPheIle : 175 ||||:!!||||||!:!||||||||||||! !:!!:!!:!!||||||.!!||||||||| eAlaIleProIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuThrPheIle 217590 : CGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTTATT : 217646 176 : PheLeuProPheProSerSerMetArgIleThrAspTyrArgGlnSerProValAsnG : 195 ||| !||||||! !!!!! ! !|||! !||| !||| ! !!!|||..!|||| ProLeuValPheProPheThrLysTyrIleIleAspThrArgTyrThrProThrAsnG 217647 : CCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCTACGAACG : 217706 196 : luIlePheTyrPheLeuGlnCysLeuAlaGlyValValLeuHisIleIleThrValGl : 214 ||||| ! !:!|||||||||! :!!||||||!.!:!!:!!||| !|||||| !!. luIleValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAl 217707 : AAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGC : 217763 215 : yAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGlyGlnMetGlnIleLeu : 233 !||||||||||||||||||.!!||||||||||||||||||||||||!!::!!:!:||| aAlaCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGluValLeu 217764 : TGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTG : 217820 234 : MetAsnTrpLeuGlyTyrLeuValAsnGlyArgAlaAspMetSerLysSerLeuAspG : 253 |||||||||||| !:!!|||:!!:!!|||||||||||||||||| ! !!!:!!|||| MetAsnTrpLeuGlnHisLeuIleAspGlyArgAlaAspMetSerAspThrValAspG 217821 : ATGAACTGGCTGCAACATTTAATCGACGGTAGAGCGGATATGAGCGATACTGTGGATG : 217880 254 : lyArgIleAlaSerIleValGluGlnHisValArgIleLeu{Ly} >>>> Target : 267 ||||||||||||||||||||...||||||||||||||||||{||} 12 lyArgIleAlaSerIleValSerGlnHisValArgIleLeu{Ly}++ 217881 : GTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTA{AA}gt........... : 217926 268 : Intron 1 >>>> {s}PheLeuAspLeuThrGluLysThrLeuArgTyrIleAla : 280 29 bp {|}|||||| |||||||||!:!||||||!:! ! |||:!! ++{s}PheLeuThrLeuThrGluArgThrLeuGlnGlnIleSer 217927 : ..............ag{a}tttttgaCGCTCACAGAGAGAACCCTCCAGCAAATCTCT : 219190 281 : LeuValGluPheLeuGlyCysThrThrValLeuCysLeuLeuSerTyrTyrValLeuV : 300 !!!!.!||||||||||||||||||! !! !:!!||||||:!!.!!||||||:!!:!!| PheAlaGluPheLeuGlyCysThrMetAspIleCysLeuValGlyTyrTyrIleIleV 219191 : TTCGCTGAATTTCTAGGATGCACCATGGACATATGTCTCGTTGGATATTACATTATCG : 219250 301 : al >>>> Target Intron 2 >>>> GluTrpSerThrAsnAspArgIleSer : 309 || 76 bp ||||||!.!:!!|||||| !! ||| al++ ++GluTrpLysSerAsnAspValThrSer 219251 : TGgt.........................agGAATGGAAATCGAATGATGTAACGAGT : 219353 310 : SerAlaThrTyrAlaValLeuPheValSerPheThrPheAsnIlePheIleTyrCysT : 329 :!!!.!|||||| !:!!|||.!!:!!|||.!.||||||||||||||||||:::|||| AlaValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysT 219354 : GCAGTGACATACATCATTCTACTTATATCCCTcactttcaacattttcatattttgct : 219413 330 : yrIleGlyGluLeuValAlaGluGly >>>> Target Intron 3 >>>> Cys : 338 |||||||||||:!!||||||||| 73 bp ||| yrIleGlyGluIleValAlaGluGln++ ++Cys 219414 : aCATAGGAGAGATCGTTGCTGAACAggt.........................agTGt : 219513 339 : ArgGlnIleAlaGluIleSerTyrMetIleAspTrpTyrArgLeuLeuGlyLysArgL : 358 |||:::|||...|||:::||||||||||||!!:|||||||||||| !||||||!:!| ArgLysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysL 219514 : aggaaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAA : 219573 359 : ysLeuSerIleIleLeuIleMetGlnMetSerHisSerThrIleLysLeuThrAlaGl : 377 |||||!!!! !:!!|||! !!!: ||||||:!!|||:!!||||||||||||||||| ysLeuTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGl 219574 : AGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGG : 219630 378 : yAsnIleValIleLeuSerTyrSerLysPheGlyAsp >>>> Target Intron : 390 ||||!!:||| !|||||| !|||! ||| !||| 87 bp yAsnMetValGluLeuSerIleSerThrPheThrAsp++ 219631 : AAATATGGTCGAATTGTCTATCAGCACTTTTACCGACgt................... : 219671 391 : 4 >>>> ValValLysSerAlaPheAlaPheLeuAsnValLeuArgThrValThr : 405 |||||||||!!!||| !!.!!|||||||||||||||||||||:!!||| ++ValValLysThrAlaValThrPheLeuAsnValLeuArgThrLeuThr 219672 : ......agGTCGTTAAGACTGCAGTCACGTTTCTGAATGTACTACGAACATTGACT : 219803 vulgar: gi|805766356|ref|XP_012135238.1| 1 405 . KQ414889.1 217126 219803 + 1188 M 265 795 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 37 111 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 83 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217127 219803 1188 + . gene_id 1 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217127 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217127 217923 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219668 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219668 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219669 219670 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219669 219755 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 219754 219755 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219756 219803 . + . KQ414889.1 exonerate:protein2genome:local exon 219756 219803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217127 219803 1188 + . alignment_id 1 ; Query gi|805766356|ref|XP_012135238.1| ; Align 217127 2 795 ; Align 219154 268 99 ; Align 219329 301 111 ; Align 219513 338 156 ; Align 219756 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1132 Query range: 3 -> 405 Target range: 226888 -> 230518 4 : AlaThrAlaLysAlaGluGlnGluTyrLeuLysAsnValAspLeuSerValArgLeuA : 23 |||:!! ! !.!!|||.!.!!:|||! !:!! !!:!!:!!||||||:!!!:!|||| AlaSerLeuAlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuA 226889 : GCGTCTCTCGCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGA : 226946 24 : snArgTrpIleLeuLysProIleAlaAlaTrpProGluSerSerThrValSerProIl : 42 ||||||||:!:|||||||||:!!!.! !||||||..!||| !!! ! !|||! !|| snArgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgLysSerSerArgIl 226947 : ATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAAT : 227003 43 : eLysLysTyrLeuGlyTrpPheValHisIleIleCysTyrSerLeuLeuSerPheLeu : 61 | !!:!! !!!!..!|||!!.:!! !.!!:!!||||||:!!|||:!!|||||| ! eGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGlu 227004 : AGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAG : 227060 62 : PheValProCysLeuThrPheLeuIleLeuGluValAsnAspThrTyrAsnArgIleL : 81 !!.||| !! !! ! !!:!:!!:!!|||||||||!!.! !.!!||||||! !:!:| LeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuL 227061 : TTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGA : 227120 82 : ysLeuIleGlyProLeuSerPhePheLeuMetSerTyrLeuLysTyrTyrLeuMetLe : 100 ||:!!|||||||||:!!||||||||| !|||||| !|||||||||! !:!!:!! ysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuTh 227121 : AAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGAC : 227177 101 : uLeuHisLysAsnAspIleLeuLysCysValGlnGlnValGlnArgAspTrpAlaAsn : 119 !!!!|||:!!:!!|||||||||:!!||||||:!!!:!:!!:!! !!|||||| !||| rPheHisGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsn 227178 : GTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAAT : 227234 120 : AlaArgHisLeuAsnAspArgAsnIleMetGlyMetAsnAlaAsnTyrGlyArgLysL : 139 !|||:!!|||.!.|||||||||:!:|||! !! ! !!||| !!||||||||||||| IleArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysL 227235 : ATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAAT : 227294 140 : euValValValSerAlaPhePheMetTyrSerSerTyrIlePhePheTyrIleAlaVa : 158 ||:!!..!:!!!!!.!!||||||:!:!:!||||||::::::||||||||||||!.!|| euIleThrIleCysThrPhePheValPheSerSerPheValPhePheTyrIleValVa 227295 : TGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGT : 227351 159 : lProIleThrValGlyArgIleProAlaGlnAspGlyAsnPheThrPheIlePheLeu : 177 |||||||!.!!.!|||!!!:!! !!.!!:!!||||||||| !!:!!:!||| :!! lProIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMet 227352 : ACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATG : 227408 178 : ProPheProSerSerMetArgIleThrAspTyrArgGlnSerProValAsnGluIleP : 197 |||||||||! ! !!! ! !|||.!!||| !||| ! |||||| !!|||||||||| ProPheProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIleP 227409 : CCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCT : 227468 198 : heTyrPheLeuGlnCysLeuAlaGlyValValLeuHisIleIleThrValGlyAlaCy : 216 ||!:!! :!!|||! !:!!.!!|||:!!||||||||| !:!!||| !!.!||||| hePheSerValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCy 227469 : TCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTG : 227525 217 : sSerLeuAlaAlaThrPheAlaValHisAlaCysGlyGlnMetGlnIleLeuMetAsn : 235 ||||:!!|||||| !.!!||||||||||||||||||||||||:!!:!:|||:!!::! sSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSer 227526 : CAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCC : 227582 236 : TrpLeuGlyTyrLeuValAsnGlyArgAlaAspMetSerLysSerLeuAspGlyArgI : 255 |||||||||:!!|||:!!:!!|||||||||||||||||||||!!!||||||! !|||| TrpLeuGlyHisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAspAspArgI 227583 : TGGCTGGGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGATGATAGAA : 227642 256 : leAlaSerIleValGluGlnHisValArgIleLeu{Ly} >>>> Target Intro : 267 |||||||||||||| !!.|||||||||||||||{!!} 396 bp leAlaSerIleValThrHisHisValArgIleLeu{As}++ 227643 : TCGCTAGCATCGTCACTCACCACGTTCGAATATTG{AA}gt................. : 227682 268 : n 1 >>>> {s}PheLeuAspLeuThrGluLysThrLeuArgTyrIleAlaLeuVal : 282 {.}||||||! !|||! !|||||||||:!!!:! ! ||||||!!!||| ++{n}PheLeuAlaLeuIleGluLysThrMetGlnGlnIleAlaPheVal 227683 : ........ag{C}TTTCTGGCCCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTA : 228119 283 : GluPheLeuGlyCysThrThrValLeuCysLeuLeuSerTyrTyrValLeuVal >> : 301 ||||||||||||||||||! !:!!|||||||||:!!..!||||||:!!:!!..! GluPheLeuGlyCysThrIleIleLeuCysLeuIleGluTyrTyrIleIleThr++ 228120 : GAATTTTTAGGGTGTACAATAATTCTGTGCCTCATCGAGTATTACATCATAACGgt.. : 228178 302 : >> Target Intron 2 >>>> GluTrpSerThrAsnAspArgIleSerSerAla : 311 72 bp ||||||!:! !!!!.!!: !! !! !:!!!.! ++GluTrpAsnProLysGluLeuThrPheAlaVal 228179 : .......................agGAATGGAATCCGAAAGAGTTAACATTTGCTGTA : 228278 312 : ThrTyrAlaValLeuPheValSerPheThrPheAsnIlePheIleTyrCysTyrIleG : 331 ||||||:!!!.!|||.!!:!!||||||||||||||||||||||||:::|||||||||| ThrTyrSerAlaLeuLeuLeuSerPheThrPheAsnIlePheIlePheCysTyrIleG 228279 : ACTTACTCAGCGTTACTTTTATCCTTTAccttcaatattttcatattttgttaTATAG : 228338 332 : lyGluLeuValAlaGluGly >>>> Target Intron 3 >>>> CysArgGln : 340 |||||:!!||||||||| ! 1889 bp ||||||:!! lyGluIleValAlaGluHis++ ++CysArgLys 228339 : GAGAAATTGTTGCCGAACACgt.........................agTGCAGAAAA : 230254 341 : IleAlaGluIleSerTyrMetIleAspTrpTyrArgLeuLeuGlyLysArgLysLeuS : 360 :!!!.!|||! ||||||||||||!!:|||||||||||| !|||!!.!:!||||||! ValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyAsnLysLysLeuC 230255 : GTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAAACAAGAAGCTCT : 230314 361 : erIleIleLeuIleMetGlnMetSerHisSerThrIleLysLeuThrAlaGlyAsnIl : 379 !! !|||||||||!!: ||||||:!!!!!:!!! |||!!!||||||||||||!! ysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheThrAlaGlyAsnMe 230315 : GTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTACAGCAGGAAACAT : 230371 380 : eValIleLeuSerTyrSerLysPheGlyAsp >>>> Target Intron 4 >>>> : 390 :||| !|||||| !:!! |||.!!||| 67 bp tValGluLeuSerValAsnThrPheSerAsp++ 230372 : GGTTGAATTATCCGTAAACACTTTCAGCGACgt......................... : 230406 391 : ValValLysSerAlaPheAlaPheLeuAsnValLeuArgThrValThr : 405 |||||||||!!!:!!.!.!.!|||||||||:!!|||||||||:!!||| ++ValValLysThrSerMetGlyPheLeuAsnMetLeuArgThrLeuThr 230407 : agGTCGTTAAAACGTCCATGGGTTTCTTAAACATGCTACGAACACTGACG : 230518 vulgar: gi|805766356|ref|XP_012135238.1| 3 405 . KQ414889.1 226888 230518 + 1132 M 263 789 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226889 230518 1132 + . gene_id 2 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226889 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226889 227679 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230403 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230403 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 230404 230405 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 230404 230470 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 230469 230470 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230471 230518 . + . KQ414889.1 exonerate:protein2genome:local exon 230471 230518 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226889 230518 1132 + . alignment_id 2 ; Query gi|805766356|ref|XP_012135238.1| ; Align 226889 4 789 ; Align 228077 268 99 ; Align 228248 301 111 ; Align 230248 338 156 ; Align 230471 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 842 Query range: 3 -> 269 Target range: 221336 -> 222134 4 : AlaThrAlaLysAlaGluGlnGluTyrLeuLysAsnValAspLeuSerValArgLeuA : 23 :!!:!!.!!:::!.!||| ! !!:||| !! !|||||| ! |||||||||!:!|||! SerSerThrArgValGluTyrAspTyrLysThrAsnValLysLeuSerValGlnLeuS 221337 : TCTTCGACTCGTGTTGAATACGATTACAAGACGAACGTGAAATTGAGCGTGCAATTGA : 221394 24 : snArgTrpIleLeuLysProIleAlaAlaTrpProGluSerSerThrValSerProIl : 42 :!|||||||||||||||||||||!.!!.!||||||.!.|||:!!!.!:!!||| !!:! erArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaAsnIleSerThrVa 221395 : GCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGT : 221451 43 : eLysLysTyrLeuGlyTrpPheValHisIleIleCysTyrSerLeuLeuSerPheLeu : 61 !:!!!:!|||||| !|||.!.:!!:!!:!!:!!||||||||||||:!!!!!|||||| lGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLeuIleThrPheLeu 221452 : AGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTC : 221508 62 : PheValProCysLeuThrPheLeuIleLeuGluValAsnAspThrTyrAsnArgIleL : 81 !!.||||||||| ! !!:!:!!||||||||||||.!.|||..!||||||||||||| LeuValProCysSerLeuTyrValIleLeuGluValGluAspValTyrAsnArgIleL 221509 : TTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCA : 221568 82 : ysLeuIleGlyProLeuSerPhePheLeuMetSerTyrLeuLysTyrTyrLeuMetLe : 100 |||||:!:|||||||||||||||! !:!!|||:!!!:!|||||||||:!!|||:!!:! ysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIl 221569 : AATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGAT : 221625 101 : uLeuHisLysAsnAspIleLeuLysCysValGlnGlnValGlnArgAspTrpAlaAsn : 119 !|||:!!:!!|||||||||! !:!!|||:!!:!!!:::!!:!! !!|||||| !||| eLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTrpAspTrpLysAsn 221626 : ACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAAT : 221682 120 : AlaArgHisLeuAsnAspArgAsnIleMetGlyMetAsnAlaAsnTyrGlyArgLysL : 139 !! !:!!! !!!.|||!:!:!!|||||| ! !||||||! !!:!||||||::!| IleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgL 221683 : ATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGAT : 221742 140 : euValValValSerAlaPhePheMetTyrSerSerTyrIlePhePheTyrIleAlaVa : 158 ||:!!:!!:!!!!!.!!|||||||||||||||...::::::|||:::|||||||||:! euIleMetIleCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIl 221743 : TGATCATGATCTGCACATTTTTCATGTACAGTggtttcgttttttattacatAGCCAT : 221799 159 : lProIleThrValGlyArgIleProAlaGlnAspGlyAsnPheThrPheIlePheLeu : 177 !|||.!!!:!||||||!:!||||||||||||||| ||| ||||||||| :!! eProPheSerValGlyLysIleProAlaGlnAspValAsnValThrPheIleProMet 221800 : ACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATG : 221856 178 : ProPheProSerSerMetArgIleThrAspTyrArgGlnSerProValAsnGluIleP : 197 !||||||! !|||! !|||..!||| !||| ! ||||||||||||||||||. ValPheProPheSerArgPheIleValAspThrArgTyrSerProValAsnGluIleL 221857 : GTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTC : 221916 198 : heTyrPheLeuGlnCysLeuAlaGlyValValLeuHisIleIleThrValGlyAlaCy : 216 !.!:!! |||||| !:!!||||||!.!:!!:!!|||! !|||||| !!.!||||| euPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCy 221917 : TGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTG : 221973 217 : sSerLeuAlaAlaThrPheAlaValHisAlaCysGlyGlnMetGlnIleLeuMetAsn : 235 |||||||!.!|||! !||||||||||||||||||||||||||||||:!:||||||!:! sSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSer 221974 : CAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGC : 222030 236 : TrpLeuGlyTyrLeuValAsnGlyArgAlaAspMetSerLysSerLeuAspGlyArgI : 255 |||||| !:!!|||:!!||||||||||||||||||!!!!!.!:!:!!||| !!|||| TrpLeuLysHisLeuIleAsnGlyArgAlaAspMetCysAsnAsnValAspArgArgI 222031 : TGGCTGAAACATTTGATCAACGGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAA : 222090 256 : leAlaSerIleValGluGlnHisValArgIleLeuLysPheLeu : 269 |||||!.!||||||.!.||||||||||||||||||:!!!:!:!! leAlaLysIleValAsnGlnHisValArgIleLeuGlnTyrVal 222091 : TAGCGAAGATTGTGAATCAACACGTTCGAATATTGCAGTATGTA : 222134 vulgar: gi|805766356|ref|XP_012135238.1| 3 269 . KQ414889.1 221336 222134 + 842 M 266 798 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221337 222134 842 + . gene_id 3 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221337 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221337 222134 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221337 222134 842 + . alignment_id 3 ; Query gi|805766356|ref|XP_012135238.1| ; Align 221337 4 798 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 697 Query range: 11 -> 271 Target range: 212854 -> 213634 12 : TyrLeuLysAsnValAspLeuSerValArgLeuAsnArgTrpIleLeuLysProIleA : 31 ||| !|||...|||:::||||||::: !! !|||||||||:!!|||||||||! ! TyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrG 212855 : TACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGG : 212912 32 : laAlaTrpProGluSerSerThrValSerProIleLysLysTyrLeuGlyTrpPheVa : 50 .! !||||||!!:!.!||| !||||||||||||:!!||| !!:!!!.! ! !!.|| lyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIleAlaArgLeuVa 212913 : GTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGT : 212969 51 : lHisIleIleCysTyrSerLeuLeuSerPheLeuPheValProCysLeuThrPheLeu : 69 |:!!! !:!!||||||.!!|||:!!.!!!:!||| ! :!!|||||| ! !!:!:!! lAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrVal 212970 : CAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTG : 213026 70 : IleLeuGluValAsnAspThrTyrAsnArgIleLysLeuIleGlyProLeuSerPheP : 89 .!!|||!!:|||...::: :::......|||:!!|||.!!||| !!!!:!!|||! PheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheC 213027 : TTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTT : 213086 90 : heLeuMetSerTyrLeuLysTyrTyrLeuMetLeuLeuHisLysAsnAspIleLeuLy : 108 !:!! :!! ! !||||||:!!! !:!!:!!|||||| :!!||||||! !! ysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgTh 213087 : GCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTAC : 213143 109 : sCysValGlnGlnValGlnArgAspTrpAlaAsnAlaArgHisLeuAsnAspArgAsn : 127 !||||||:!!!!.:!!:!! !|||||| !||| !! !||| !.!.|||!:!.!. rCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGlu 213144 : GTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAA : 213200 128 : IleMetGlyMetAsnAlaAsnTyrGlyArgLysLeuValValValSerAlaPhePheM : 147 ||||||!.!:!!||||||!:!!:!|||!:!!:!:!!|||..!:!!!!!|||||||||| IleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPhePheM 213201 : ATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCA : 213260 148 : etTyrSerSerTyrIlePhePheTyrIleAlaValProIleThrValGlyArgIlePr : 166 |||||!!!.!!!:!! |||!:!!:!:!!!.!|||||||||!:!!.!! !!:!!!: etTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLysMetVa 213261 : TGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGT : 213317 167 : oAlaGlnAspGlyAsnPheThrPheIlePheLeuProPheProSerSerMetArgIle : 185 !|||:!!||| !||| ! ||||||! ! :!! ! !!||| !|||! !||| lAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSerArgPheIle 213318 : AGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATC : 213374 186 : ThrAspTyrArgGlnSerProValAsnGluIlePheTyrPheLeuGlnCysLeuAlaG : 205 ..!||| !||| ! |||||||||||||||||||||!:!!!.:!!||| !:!!|||| ValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleIleAlaG 213375 : GTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTG : 213434 206 : lyValValLeuHisIleIleThrValGlyAlaCysSerLeuAlaAlaThrPheAlaVa : 224 |||||:!!:!!||| !|||.!!|||! !||||||||||||||||||..!|||||||| lyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPheAlaVa 213435 : GAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGT : 213491 225 : lHisAlaCysGlyGlnMetGlnIleLeuMetAsnTrpLeuGlyTyrLeuValAsnGly : 243 ||||||||||||||||||| |||||||||!:!||||||! !:!!|||:!!:!!||| lHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGly 213492 : TCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGT : 213548 244 : ArgAlaAspMetSerLysSerLeuAspGlyArgIleAlaSerIleValGluGlnHisV : 263 |||! !||||||||||||!:!:!!|||! !||||||||| !||||||.!.||||||| ArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleValAsnGlnHisV 213549 : AGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATG : 213608 264 : alArgIleLeuLysPheLeuAspLeu : 271 ||||||||||||||!:::!!!!:||| alArgIleLeuLysTrpValGluLeu 213609 : TGCGGATACTGAAGTGGGTGGAATTG : 213634 vulgar: gi|805766356|ref|XP_012135238.1| 11 271 . KQ414889.1 212854 213634 + 697 M 260 780 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212855 213634 697 + . gene_id 4 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212855 213634 . + . KQ414889.1 exonerate:protein2genome:local exon 212855 213634 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212855 213634 697 + . alignment_id 4 ; Query gi|805766356|ref|XP_012135238.1| ; Align 212855 12 780 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 631 Query range: 8 -> 267 Target range: 208185 -> 208962 9 : GluGlnGluTyrLeuLysAsnValAspLeuSerValArgLeuAsnArgTrpIleLeuL : 28 .!.::!.!.||| !!!.:!!:!!..!!!!!:!|||||||||||| !|||! |||| AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 29 : ysProIleAlaAlaTrpProGluSerSerThrValSerProIleLysLysTyrLeuGl : 47 || !|||!.!:!!||||||..!|||! ! ! !||| !:!!:!!!!. !! ! ysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHi 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCA : 208300 48 : yTrpPheValHisIleIleCysTyrSerLeuLeuSerPheLeuPheValProCysLeu : 66 ! .!!:!!:!!:!!:!! !!:!!!!!||||||.!!|||:!! ! :!!||| ! ! sIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGly 208301 : TATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGC : 208357 67 : ThrPheLeuIleLeuGluValAsnAspThrTyrAsnArgIleLysLeuIleGlyProL : 86 ! !||| !||||||! !|||.!.||| !|||:!!!:!:!!|||:!! !.!! !!| MetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaL 208358 : ATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTC : 208417 87 : euSerPhePheLeuMetSerTyrLeuLysTyrTyrLeuMetLeuLeuHisLysAsnAs : 105 |||||||||||:!!|||:!!!:! !|||||| :!!||| !:!!!.!:!!..!|| euSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAs 208418 : TGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGA : 208474 106 : pIleLeuLysCysValGlnGlnValGlnArgAspTrpAlaAsnAlaArgHisLeuAsn : 124 ||||! !|||||||||:!! ! |||:!! !|||||| !|||!.!..!||| !.!. pIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGlu 208475 : CATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAG : 208531 125 : AspArgAsnIleMetGlyMetAsnAlaAsnTyrGlyArgLysLeuValValValSerA : 144 ||||||!!.|||||| ! ||||||!:!!:!!.!|||||||||:!!|||:!!!!!! AspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysG 208532 : GACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCG : 208591 145 : laPhePheMetTyrSerSerTyrIlePhePheTyrIleAlaValProIleThrValGl : 163 .! !|||||||||.!!.!. ||||||:::|||||||||:!!|||:!!||| !! lyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAs 208592 : GAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGA : 208648 164 : yArgIleProAlaGlnAspGlyAsnPheThrPheIlePheLeuProPheProSerSer : 182 !!:!:!! !! !:!!! !||||||!!.|||!:!! ! ||| !!:!||| ! !! pLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValPro 208649 : CAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCT : 208705 183 : MetArgIleThrAspTyrArgGlnSerProValAsnGluIlePheTyrPheLeuGlnC : 202 ! ! !||| !||| !||| ! |||||||||||||||||||||||| :!!|||! LysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnL 208706 : AAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAAT : 208765 203 : ysLeuAlaGlyValValLeuHisIleIleThrValGlyAlaCysSerLeuAlaAlaTh : 221 |||:!!||| !!||| !|||! !||||||||||||||||||.!!||||||||| euLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLe 208766 : TGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCT : 208822 222 : rPheAlaValHisAlaCysGlyGlnMetGlnIleLeuMetAsnTrpLeuGlyTyrLeu : 240 !.!!|||:!!|||||||||||||||:!!||||||||||||::!|||:!!! ! ! ||| uLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeu 208823 : GCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTG : 208879 241 : ValAsnGlyArgAlaAspMetSerLysSerLeuAspGlyArgIleAlaSerIleValG : 260 |||:!!||||||! !||| !..!|||!:!|||||| !|||:!:|||!:!||||||| ValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleValG 208880 : GTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCGTGG : 208939 261 : luGlnHisValArgIleLeuLys : 267 ||||||||||||||:!::!!||| luGlnHisValArgValIleLys 208940 : AGCAGCATGTTCGAGTGATCAAG : 208962 vulgar: gi|805766356|ref|XP_012135238.1| 8 267 . KQ414889.1 208185 208962 + 631 M 259 777 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 208962 631 + . gene_id 5 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208186 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208962 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208186 208962 631 + . alignment_id 5 ; Query gi|805766356|ref|XP_012135238.1| ; Align 208186 9 777 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 508 Query range: 0 -> 342 Target range: 259721 -> 261859 1 : MetGlnLysAlaThrAlaLysAlaGluGlnGluTyrLeuLysAsnValAspLeuSerV : 20 ||| !!!. !:!!!.! !.!||| !...!:! !!..:!! !|||! !|||: MetThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerL 259722 : ATGACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCC : 259779 21 : alArgLeuAsnArgTrpIleLeuLysProIleAlaAlaTrpProGluSerSerThrVa : 39 !!!:!!!!|||||||||.!!||||||||||||!.!||||||||| ||||||:!!.. euGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 259780 : TCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCAC : 259836 40 : lSerProIleLysLysTyrLeuGlyTrpPheValHisIleIleCysTyrSerLeuLeu : 58 !!!! !:!!:!!||| !:!!..! .!!:!! !.!!|||||||||||| !:!! rThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIle 259837 : GACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATA : 259893 59 : SerPheLeuPheValProCysLeuThrPheLeuIleLeuGluValAsnAspThrTyrA : 78 ! !! !.!.:!!||||||:!! ! !:!!:!!|||||| !.!...! !|||! LeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrM 259894 : CTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACA : 259953 79 : snArgIleLysLeuIleGlyProLeuSerPhePheLeuMetSerTyrLeuLysTyrTy : 97 !:!! |||:!!:!!|||||||||!!! !!::!!!:!:.!!! !:!!!!.||| etLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrTh 259954 : TGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACAC : 260010 98 : rLeuMetLeuLeuHisLysAsnAspIleLeuLysCysValGlnGlnValGlnArgAsp : 116 !:!!||||||... !..|||||||||!..||||||:!!!!.|||:!!!.!||| rThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAsp 260011 : AACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGAT : 260067 117 : TrpAlaAsnAlaArgHisLeuAsnAspArgAsnIleMetGlyMetAsnAlaAsnTyrG : 136 ||| !! ! !! !... !!!.|||!:!|||:!:||| !! !!|||!!.!:!| TrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheG 260068 : TGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCG : 260127 137 : lyArgLysLeuValValValSerAlaPhePheMetTyrSerSerTyrIlePhePheTy : 155 ||||| ! :!!!.!!.! !!!!||| !|||:!! ! .!!.!! !:!:! !|||! lyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCy 260128 : GCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTG : 260184 156 : rIleAlaValProIleThrValGlyArgIleProAlaGlnAspGlyAsnPheThrPhe : 174 !:!:!.!..! !:!:!:!..!! ! !|||! !!.! !:!!! !!.. ! ! !! sLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal 260185 : TTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTT : 260241 175 : IlePheLeuProPheProSerSerMetArgIleThrAspTyrArgGlnSerProValA : 194 !.!.||||||! ! !! !! !! ..!:!:! !:!! !.!.!.||||||:!!| HisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetA 260242 : CATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGA : 260301 195 : snGluIlePheTyrPheLeuGlnCysLeuAlaGlyValValLeuHisIleIleThrVa : 213 |||||||| !! ! !!:!!|||! !:!!:!!||| !!:!!:!!:!! ! !||||| snGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrVa 260302 : ACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGT : 260358 214 : lGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGlyGlnMetGlnIle : 232 |||| !! !||||||||||||..!.!..!!!.!|||||||||||||||:!!.!.:!: lGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnVal 260359 : TGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTG : 260415 233 : LeuMetAsnTrpLeuGlyTyrLeuValAsn<->GlyArgAlaAspMetSerLysSerL : 251 ||||||.!.|||:!! ! ! !!!|||:!! ..!||| ! ! !!.!|||:!!! LeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaP 260416 : CTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTC : 260475 252 : euAspGlyArgIleAlaSerIleValGluGlnHisValArgIleLeu<-><->LysPh : 268 ! ! !..!|||!.! !|||||||||!!.|||:!!||| !||| ! !! roPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeuThr***AspLe 260476 : CTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTCACGTAAGATTT : 260532 269 : eLeuAspLeuThrGlu >>>> Target Intron 1 >>>> LysThrLeuArgT : 278 .!!!|||:!!||| 251 bp ! ..!:!!!.! uPheAspIleThrPhe++ ++AspValMetAsnA 260533 : GTTTGATATTACTTTTgt.........................agGATGTGATGAACC : 260813 279 : yrIleAlaLeuValGluPheLeuGlyCysThrThrValLeuCysLeuLeuSerTyrTy : 297 |||..!!!!:!!|||!!.!!! !!|||||| !! !:!!|||||||||.!!||||| rgIleCysPheLeuGluLeuPheArgCysThrLeuAspIleCysLeuLeuGlyTyrTy 260814 : GGATATGCTTCCTGGAGTTGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTA : 260870 298 : rValLeuVal >>>> Target Intron 2 >>>> GluTrpSerThrAsnAspA : 307 |:!!|||:!! 852 bp ||||||:!! !.!.|||! rIleLeuMet++ ++GluTrpAlaGluGlnAspI 260871 : TATTCTTATGgt.........................agGAATGGGCTGAGCAAGATA : 261752 308 : rgIleSerSerAlaThrTyrAlaValLeuPheValSerPheThrPheAsnIlePheIl : 326 ! !!:! !:!!|||||| !:!!:!!.!.:!!:!!.!! !||||||:!!||||| leGlnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheIl 261753 : TACAAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTAT : 261809 327 : eTyrCysTyrIleGlyGluLeuValAlaGluGlyCysArgGlnIleAla : 342 | !|||||||||||||||:!!:!!.!!||| ! !:!!!.:!:||| eIleCysTyrIleGlyGluIleLeuThrGluGlnValGlnHisLeuAla 261810 : AATCTGTTACATCGGTGAAATACTAACGGAACAGGTACAACATTTGGca : 261859 vulgar: gi|805766356|ref|XP_012135238.1| 0 342 . KQ414889.1 259721 261859 + 508 M 242 726 G 0 3 M 24 72 G 0 6 M 7 21 5 0 2 I 0 247 3 0 2 M 27 81 5 0 2 I 0 848 3 0 2 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259722 261859 508 + . gene_id 6 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259722 260549 . + . KQ414889.1 exonerate:protein2genome:local exon 259722 260549 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260550 260551 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260550 260800 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260799 260800 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260801 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260801 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261859 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261859 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259722 261859 508 + . alignment_id 6 ; Query gi|805766356|ref|XP_012135238.1| ; Align 259722 1 726 ; Align 260451 243 72 ; Align 260529 267 21 ; Align 260801 274 81 ; Align 261734 301 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 478 Query range: 0 -> 341 Target range: 256601 -> 258387 1 : MetGlnLysAlaThrAlaLysAlaGluGlnGluTyrLeuLysAsnValAspLeuSerV : 20 ||| !!.! ! !||| !!.!:!! !.!.!:! !!.. !! !|||! !|||: MetThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerL 256602 : ATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTC : 256659 21 : alArgLeuAsnArgTrpIleLeuLysProIleAlaAlaTrpProGluSerSerThrVa : 39 !!!:!||||||||||||.!!||||||||||||!.!||||||||| ||||||:!!.. euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 256660 : TCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCAC : 256716 40 : lSerProIleLysLysTyrLeuGlyTrpPheValHisIleIleCysTyrSerLeuLeu : 58 !!!! !!:!!:!!::! !!:!!..! !!:!!:!!|||:!!||||||.!!! !:!! rThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIle 256717 : TACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATA : 256773 59 : SerPheLeuPheValProCysLeuThrPheLeuIleLeuGluValAsnAspThrTyrA : 78 ! !||| !!!.:!!||||||||| ! !:!!.!!|||!!:! !:!!..! !||| LeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrM 256774 : TTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAca : 256833 79 : snArgIleLysLeuIleGlyProLeuSerPhePheLeuMetSerTyrLeuLysTyrTy : 97 ::::::||| ...||||||:!!||| !!:::!!!!:|||! ! !!!.||| etLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrTh 256834 : tgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACAC : 256890 98 : rLeuMetLeuLeuHisLysAsnAspIleLeuLysCysValGlnGlnValGlnArgAsp : 116 |||:!!||||||!!. !!!.||||||! ! ! ||||||:!!!!.:!!:!!! !||| rLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAsp 256891 : GTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGAT : 256947 117 : TrpAlaAsnAlaArgHisLeuAsnAspArgAsnIleMetGlyMetAsnAlaAsnTyrG : 136 ||| !! !.!|||... !!!.|||!:!.!.:!:||| !! !||||||!..!:!| TrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheG 256948 : TGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCG : 257007 137 : lyArgLysLeuValValValSerAlaPhePheMetTyrSerSerTyrIlePhePheTy : 155 ||||| ! :!!!.!..! !!!!!||| !.!!||| ! |||.!! ... |||:: lyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePh 257008 : GTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttctt : 257064 156 : rIleAlaValProIleThrValGlyArgIleProAlaGlnAspGlyAsnPheThrPhe : 174 :::::!! ! !!:!:!.!..!! !! !|||! !!.! !:!!! !!.. ! ! ! eValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleVal 257065 : cgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTG : 257121 175 : IlePheLeuProPheProSerSerMetArgIleThrAspTyrArgGlnSerProValA : 194 ! ! |||||| !! !! !! !! !!:!:!: !:!! ! !|||||||||..!| ArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrA 257122 : CGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGA : 257181 195 : snGluIlePheTyrPheLeuGlnCysLeuAlaGlyValValLeuHisIleIleThrVa : 213 |||||||| ! !|||:!!||| !! !:!!..!:!!:!! ! !! !! !||||| snGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrVa 257182 : ACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGT : 257238 214 : lGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGlyGlnMetGlnIle : 232 |.!! !! !||||||||||||..!||||||..!||||||! !||||||:!! :!: lSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrVal 257239 : TAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTG : 257295 233 : LeuMetAsnTrpLeuGlyTyrLeuValAsnGlyArgAlaAspMetSerLysSerLeuA : 252 ||||||:::|||:!! ! ! !!!||||||! ! ! !:!! ...|||:::... LeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheP 257296 : CTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttc : 257355 253 : sp<->GlyArgIleAlaSerIleValGluGlnHisValArgIleLeu{Ly} >>>> : 267 !!:!|||!.! !|||||||||!!.|||:!!|||:!:|||{!.} roPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Se}++ 257356 : ctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt..... : 257407 268 : Target Intron 1 >>>> {s}PheLeuAspLeuThrGluLysThrLeuArgTyr : 278 756 bp {.} !:!! !! !..! !||| !!:!! ! -+{r}HisValArgTyrValProLysProValAlaThr 257408 : ....................cg{C}CACGTGCGTTATGTACCGAAACCTGTTGCAACA : 258192 279 : IleAlaLeuValGluPheLeuGlyCysThrThrValLeuCysLeuLeuSerTyrTyrV : 298 ! ! !||| !..!!:!||| !! !:!! ! ! |||... |||:::: LysTrpLeuLysSerTyrLeuGln***PheSerTyrThrGlnLeuPheCysTyrPheL 258193 : AAATGGTTAAAATCGTACCTACAATAATTTTCCTATACACAGctattctgttattttt : 258252 299 : alLeuVal----GluTrpSerThrAsnAspArgIleSerSerAlaThrTyrAlaValL : 316 ::||| ####||||||||||||...||| ::: ::::::||| !:!!: euLeuPhe####GluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheMetI 258253 : tattattttcaggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTATGA : 258310 317 : euPheValSerPheThrPheAsnIlePheIleTyrCysTyrIleGlyGluLeuValAl : 335 !!.!!:!!|||...:::||||||||||||::: |||||||||||||||:!!:!!.! leLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLeuTh 258311 : TACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATTAAC : 258367 336 : aGluGlyCysArgGlnIle : 341 !||| ! ! :::||| rGluGlnValProGluIle 258368 : AGAACAGGTACCagagatt : 258387 vulgar: gi|805766356|ref|XP_012135238.1| 0 341 . KQ414889.1 256601 258387 + 478 M 252 756 G 0 3 M 14 42 S 0 2 5 0 2 I 0 752 3 0 2 S 1 1 M 33 99 F 0 4 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256602 258387 478 + . gene_id 7 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256602 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256602 257404 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 258160 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258159 258160 . + . intron_id 0 ; splice_site "CG" KQ414889.1 exonerate:protein2genome:local cds 258161 258387 . + . KQ414889.1 exonerate:protein2genome:local exon 258161 258387 . + . insertions 0 ; deletions 0 ; frameshifts 4 KQ414889.1 exonerate:protein2genome:local similarity 256602 258387 478 + . alignment_id 7 ; Query gi|805766356|ref|XP_012135238.1| ; Align 256602 1 756 ; Align 257361 253 42 ; Align 258162 268 99 ; Align 258265 301 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 468 Query range: 13 -> 271 Target range: 232447 -> 233221 14 : LysAsnValAspLeuSerValArgLeuAsnArgTrpIleLeuLysProIleAlaAlaT : 33 ::!:!! !!!:! !|||:!!!:!:!!|||||||||.!!|||! !|||!!:!.!|||| ArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaT 232448 : CGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCAT : 232505 34 : rpProGluSerSerThrValSerProIleLysLysTyrLeuGlyTrpPheValHisIl : 52 |||||... !!!! !..!||| ! !:!!:!! |||!.! .!.:!!...:! rpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLe 232506 : GGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACT : 232562 53 : eIleCysTyrSerLeuLeuSerPheLeuPheValProCysLeuThrPheLeuIleLeu : 71 !! !|||:!!||||||:!!! !! !! !.!!|||||||||:!! !|||:!!:!:!!! uThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPhe 232563 : CACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTC : 232619 72 : GluValAsnAspThrTyrAsnArgIleLysLeuIleGlyProLeuSerPhePheLeuM : 91 |||! !!....! ! ! .!.|||!!:|||! !|||||||||:!!||| !||||||| GluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuM 232620 : GAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGA : 232679 92 : etSerTyrLeuLysTyrTyrLeuMetLeuLeuHisLysAsnAspIleLeuLysCysVa : 110 ||.!! ! |||!!.|||! !! !:!!||| ! ! !|||||||||||| ! ||||| etGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysVa 232680 : TGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGT : 232736 111 : lGlnGlnValGlnArgAspTrpAlaAsnAlaArgHisLeuAsnAspArgAsnIleMet : 129 |:!!||||||:!!!:!|||||| !|||!.!!:! ! ! ! ! !!|||:!!:!:||| lGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMet 232737 : GGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATG : 232793 130 : GlyMetAsnAlaAsnTyrGlyArgLysLeuValValValSerAlaPhePheMetTyrS : 149 !! !||||||!!. !||||||..!:!!!.! !:!!:!!||||||! !|||:!!! LeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisT 232794 : TTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACA : 232853 150 : erSerTyrIlePhePheTyrIleAlaValProIleThrValGlyArgIleProAlaGl : 168 !!.!! ! !! ! ! ! |||!.!..! !:!! !:!!.!!! !.!! !!.! hrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGl 232854 : CCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGG : 232910 169 : nAspGlyAsnPheThrPheIlePheLeuProPheProSerSerMetArgIleThrAsp : 187 !:!!! !!:!!:!:!!.!. ! ||||||! ! !!! !! !! !!:!:!:! !||| yAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAsp 232911 : GAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGAC : 232967 188 : TyrArgGlnSerProValAsnGluIlePheTyrPheLeuGlnCysLeuAlaGlyValV : 207 !||| ||||||..!|||||||||.!.!:! !!||||||||||||:!!||| !!: ThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheI 232968 : ACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCA : 233027 208 : alLeuHisIleIleThrValGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAl : 226 !!:!!:!! !:!!|||||||||||||||.!!|||!.!|||..!.!.|||:!!||||| leValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAl 233028 : TCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGC : 233084 227 : aCysGlyGlnMetGlnIleLeuMetAsnTrpLeuGlyTyrLeuValAsnGlyArgAla : 245 ||||||||||:!!.!.:!::!!|||::: |||! ! !!||||||:!!!.!!:!!.! aCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGly 233085 : GTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGG : 233141 246 : AspMetSerLysSerLeuAspGlyArgIleAlaSerIleValGluGlnHisValArgI : 265 .!. !..!!:! ! !.!. !!!:!:!!!.!! !|||||||||!!.|||:!!|||! GlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgT 233142 : CAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTA : 233201 266 : leLeuLysPheLeuAspLeu : 271 !|||!:!!:!|||..!:!! hrLeuArgTyrLeuSerVal 233202 : CATTAAGGTATTTGTCTGTG : 233221 vulgar: gi|805766356|ref|XP_012135238.1| 13 271 . KQ414889.1 232447 233221 + 468 M 258 774 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232448 233221 468 + . gene_id 8 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232448 233221 . + . KQ414889.1 exonerate:protein2genome:local exon 232448 233221 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232448 233221 468 + . alignment_id 8 ; Query gi|805766356|ref|XP_012135238.1| ; Align 232448 14 774 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 436 Query range: 16 -> 267 Target range: 262846 -> 263602 17 : AspLeuSerValArgLeuAsnArgTrpIleLeuLysProIleAlaAlaTrpProGluS : 36 |||! !|||:!!!:!:!!|||||||||:!:||||||||||||!.!||||||||| !| AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 37 : erSerThrValSerProIleLysLysTyrLeuGlyTrpPheValHisIleIleCysTy : 55 ||:!!:!!:!!||| !!!::!!::! !:!! !!!::.!!:!! !:!!:!!||||| erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 56 : rSerLeuLeuSerPheLeuPheValProCysLeuThrPheLeuIleLeuGluValAsn : 74 |!!!|||:!! !! ! ! !!:!!|||! !:!! ! !:!!:!!||||||!.!.!. rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 75 : AspThrTyrAsnArgIleLysLeuIleGlyProLeuSerPhePheLeuMetSerTyrL : 94 :!! !:!!! !:!:!::!!:!!:!!|||||||||.!! !::!!!:!:.!! : AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 95 : euLysTyrTyrLeuMetLeuLeuHisLysAsnAspIleLeuLysCysValGlnGlnVa : 113 !!!!.||| !! !:!!|||||||||!..!!.||||||! ! |||||||||!!.|| leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 114 : lGlnArgAspTrpAlaAsnAlaArgHisLeuAsnAspArgAsnIleMetGlyMetAsn : 132 ||||..!||||||..!! !!.!! !...|||.!.|||!:!..!|||||| !! !||| lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 133 : AlaAsnTyrGlyArgLysLeuValValValSerAlaPhePheMetTyrSerSerTyrI : 152 |||!!.||||||||| ! :!!!.!!.! !!!!|||.!!|||||| ! !!!||| !! AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 153 : lePhePheTyrIleAlaValProIleThrValGlyArgIleProAlaGlnAspGlyAs : 171 !:! ! ! !:!!!.!..! !!.!!|||..! ! !||| !! ! :!!! !!. etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 172 : nPheThrPheIlePheLeuProPheProSerSerMetArgIleThrAspTyrArgGln : 190 ! ! !.!. !.!.||||||! !||| !! !! ..!|||! ! ! ! ! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 191 : SerProValAsnGluIlePheTyrPheLeuGlnCysLeuAlaGlyValValLeuHisI : 210 !:!|||..!|||||||||||| ! ! !|||! !|||:!!||| !!:!!:!! ! AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 211 : leIleThrValGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGlyGl : 229 ! !||||||||||||! !.!!:!!.!!|||..!||||||! !|||||||||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 230 : nMetGlnIleLeuMetAsnTrpLeuGlyTyrLeuValAsnGlyArgAlaAspMetSer : 248 |:!!.!.:!:||||||::!|||:!! ! ! !!!|||||| ! ! !||| !!:! nLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsn 263484 : GTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAAT : 263540 249 : LysSerLeu<->AspGlyArgIleAlaSerIleValGluGlnHisValArgIleLeuL : 267 |||!:!||| ! !..!|||!.! !|||||||||!!.|||:!!|||:!!|||! LysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeuA 263541 : AAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTGA : 263600 268 : ys : 267 :! rg 263601 : GG : 263602 vulgar: gi|805766356|ref|XP_012135238.1| 16 267 . KQ414889.1 262846 263602 + 436 M 235 705 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 263602 436 + . gene_id 9 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262847 263602 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263602 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262847 263602 436 + . alignment_id 9 ; Query gi|805766356|ref|XP_012135238.1| ; Align 262847 17 705 ; Align 263555 252 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 411 Query range: 16 -> 267 Target range: 266634 -> 267390 17 : AspLeuSerValArgLeuAsnArgTrpIleLeuLysProIleAlaAlaTrpProGluS : 36 |||! !|||:!!!:!||||||||||||.!!||||||||||||!.!||||||||| !! AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProL 266635 : GATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGT : 266692 37 : erSerThrValSerProIleLysLysTyrLeuGlyTrpPheValHisIleIleCysTy : 55 !||| !..!||| !:!!:!!::! !:!!..!!:: !:!! !:!!|||||||| euSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266693 : TGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 56 : rSerLeuLeuSerPheLeuPheValProCysLeuThrPheLeuIleLeuGluValAsn : 74 |!!!! !:!! !||| ! ! :!!||||||||| ! !|||:!!||||||! !.!. rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 75 : AspThrTyrAsnArgIleLysLeuIleGlyProLeuSerPhePheLeuMetSerTyrL : 94 ..!! ! !!..!:!:!:|||:!!.!!|||||||||||| !!::!!!:!:.!! : SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 95 : euLysTyrTyrLeuMetLeuLeuHisLysAsnAspIleLeuLysCysValGlnGlnVa : 113 !!!!.||| ! !:!!||||||!.!!..!!.!!:|||! ! ||||||:!!!!.:! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 114 : lGlnArgAspTrpAlaAsnAlaArgHisLeuAsnAspArgAsnIleMetGlyMetAsn : 132 !|||! !|||||| !! !!.!! !...! !.!.|||!:!.!.:!:||| !! !||| tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 133 : AlaAsnTyrGlyArgLysLeuValValValSerAlaPhePheMetTyrSerSerTyrI : 152 |||!.. !|||||| ! :!!!.!:!! !!!!!||| |||||| ! !!!.!! !: AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 153 : lePhePheTyrIleAlaValProIleThrValGlyArgIleProAlaGlnAspGlyAs : 171 !! !!:!! !:!: !..! !!.!!|||:!! !! !:!: !!.! :!!! !!. euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 172 : nPheThrPheIlePheLeuProPheProSerSerMetArgIleThrAspTyrArgGln : 190 ! ! ! ! !.!.||||||! ! !! !! !! !!:!!!:! !! ! ! rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 191 : SerProValAsnGluIlePheTyrPheLeuGlnCysLeuAlaGlyValValLeuHisI : 210 ||||||..!||||||||| !! ! !!! !|||! !:!!:!!||| !!:!!:!!:!! SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 211 : leIleThrValGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGlyGl : 229 ! !..!|||||||||! !||||||||||||..!||||||!.!|||||||||||||| erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 230 : nMetGlnIleLeuMetAsnTrpLeuGlyTyrLeuValAsnGlyArgAlaAspMetSer : 248 |:!!...:!:||||||! |||:!! ! ! !!!|||||| !! ! !|||! !:! nLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsn 267272 : GCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAAT : 267328 249 : LysSerLeu<->AspGlyArgIleAlaSerIleValGluGlnHisValArgIleLeuL : 267 |||!:!:!! !! !!:!|||!.! !:!!||||||!!.|||:!!|||:!!|||! LysAsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeuA 267329 : AAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGA : 267388 268 : ys : 267 :! rg 267389 : GG : 267390 vulgar: gi|805766356|ref|XP_012135238.1| 16 267 . KQ414889.1 266634 267390 + 411 M 235 705 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266635 267390 411 + . gene_id 10 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266635 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266635 267390 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266635 267390 411 + . alignment_id 10 ; Query gi|805766356|ref|XP_012135238.1| ; Align 266635 17 705 ; Align 267343 252 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 398 Query range: 116 -> 336 Target range: 304425 -> 305208 117 : TrpAlaAsnAlaArgHisLeuAsnAspArgAsnIleMetGlyMetAsnAlaAsnTyrG : 136 !::! !.!.!.!..! !|||!..||||||.!.!!:||| !! !!!.!.!. | TyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetG 304426 : TATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGG : 304483 137 : lyArgLysLeuValValValSerAlaPhePheMetTyrSerSerTyrIlePhePheTy : 155 |||||!!.|||..!:!!:!!!!!|||.!.|||||||||!!!.!! !! !.!!!:!:! lyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHi 304484 : GTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCA : 304540 156 : rIleAlaValProIleThrValGlyArgIleProAlaGlnAspGlyAsnPheThrPhe : 174 !! !.!:!!! !.!!.!!..!|||! ! ! !.!.!.!!: !||| !|||.!! sThrValMetGlnPheAlaThrGlyThrTyr---ValAspGluTyrAsnArgThrIle 304541 : CACGGTCATGCAGTTCGCGACCGGAACGTAT---GTGGATGAGTATAATCGTACGATT : 304594 175 : IlePheLeuProPheProSerSerMetArgIleThrAspTyrArgGlnSerProValA : 194 ! ! ||| !!:!|||!!!! !! !:!! !||| !!:! !||||||:!! LysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIleT 304595 : AAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTT : 304654 195 : snGluIlePheTyrPheLeuGlnCysLeuAlaGlyValValLeuHisIleIleThrVa : 213 !!|||:!: !!||||||:!!!!.|||:!!..!||| !|||:!!:!! !||||||!. yrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThrAl 304655 : ACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGC : 304711 214 : lGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGlyGlnMetGlnIle : 232 !|||||||||.!!||||||||| !||||||..!|||||||||||||||!!:.!.||| aGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIle 304712 : TGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATC : 304768 233 : LeuMetAsnTrpLeuGlyTyrLeuValAsnGlyArgAlaAspMetSerLysSerLeuA : 252 :!!|||::! ! |||||| !!|||||||||.!!!:!! ! |||.....!|||| ValMetSerArgLeuGlyAspLeuValAsnSerLysGlu------SerSerAspLeuA 304769 : GTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAA------TCATCTGATTTAG : 304822 253 : spGlyArgIleAlaSerIleValGluGlnHisValArgIleLeu{Ly} >>>> Tar : 267 || !|||:!! !..!|||||||||!!.|||:!!|||||||||{!:} spLysArgLeuIleGluIleValGluHisHisLeuArgIleLeu{Ar}++ 304823 : ATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTA{AG}gt........ : 304871 268 : get Intron 1 >>>> {s}PheLeuAspLeuThrGluLysThrLeuArgTyrIle : 279 70 bp {!}|||! !! :!!..!:!!! !..!|||!:! ! :!! ++{g}PheSerAlaIleValGlnThrValLeuGlnGluVal 304872 : .................ag{A}TTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTA : 304973 280 : AlaLeuValGluPheLeuGlyCysThrThrValLeuCysLeuLeuSerTyrTyrValL : 299 ..!!!!:!!||||||:!!|||! !||| !:!!:!!|||||||||..!|||||| !: CysPheLeuGluPheIleGlySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysI 304974 : TGCTTCTTGGAATTCATTGGTTCTACCTTACTGATATGTCTACTTGAATACTACTGTA : 305033 300 : euVal >>>> Target Intron 2 >>>> GluTrpSerThrAsnAspArgIle : 308 !!..! 62 bp !!:|||..!!:!!:!:!!! !:!! leThr++ ++AspTrpGluSerSerAsnThrVal 305034 : TAACGgt.........................agGATTGGGAGAGCAGTAATACCGTT : 305122 309 : SerSerAlaThrTyrAlaValLeuPheValSerPheThrPheAsnIlePheIleTyrC : 328 ||| !.!!||||||.!!||||||.!.:!!||| ! ||||||||||||||||||! | SerLeuThrThrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuC 305123 : AGTCTTACAACATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTAT : 305182 329 : ysTyrIleGlyGluLeuValAlaGlu : 336 ||||||||||||||:!!:!! !||| ysTyrIleGlyGluIleLeuMetGlu 305183 : GCTACATTGGTGAGATTCTTATGGAA : 305208 vulgar: gi|805766356|ref|XP_012135238.1| 116 336 . KQ414889.1 304425 305208 + 398 M 49 147 G 1 0 M 79 237 G 2 0 M 19 57 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304426 305208 398 + . gene_id 11 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 304426 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304426 304868 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 1 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305208 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305208 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304426 305208 398 + . alignment_id 11 ; Query gi|805766356|ref|XP_012135238.1| ; Align 304426 117 147 ; Align 304573 167 237 ; Align 304810 248 57 ; Align 304940 268 99 ; Align 305101 301 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 397 Query range: 0 -> 266 Target range: 278525 -> 279338 1 : MetGlnLysAlaThrAlaLysAlaGluGlnGluTyrLeuLysAsnValAspLeuSerV : 20 ||| ! !!.!|||:!!..!.!!!!:..! !!:: !! !:!! ! ! !|||| MetAlaLeuValThrSerSerThrAspSerThrTrpAsnThrAspTrpMetTyrSerV 278526 : ATGGCACTGGTCACTTCGTCAACCGATTCGACGTGGAACACGGATTGGATGTACAGCG : 278583 21 : alArgLeuAsnArgTrpIleLeuLysProIleAlaAlaTrpProGluSerSerThrVa : 39 ||!:!:!!|||||||||.!!||||||||||||!.!!.!|||||| ||| ! !|| alGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuCysVa 278584 : TACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGT : 278640 40 : lSerProIleLysLysTyrLeuGlyTrpPheValHisIleIleCysTyrSerLeuLeu : 58 |!!! !!:!::!!||| ! !..! ! !!:!! :!!||| !!! !! !|||:!! lThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIle 278641 : GACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATA : 278697 59 : SerPheLeuPheValProCysLeuThrPheLeuIleLeuGlu<->ValAsnAspThrT : 77 .!!||||||!!.||||||||| ! !! ! !:!:|||!!: ..!..!||| ! GlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuA 278698 : GGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCG : 278757 78 : yrAsnArgIleLysLeuIleGlyProLeuSerPhePheLeuMetSerTyrLeuLysTy : 96 !!!..!:!||||||:!!||||||||||||||||||! ! !|||:!! :!!||||| spThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrIleLysTy 278758 : ACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATA : 278814 97 : rTyrLeuMetLeuLeuHisLysAsnAspIleLeuLysCysValGlnGlnValGlnArg : 115 ||||:!!:!::!!! !!.! ..! ! ||| !|||||||||.!..!.:!!!::! ! rTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIleArgThr 278815 : TTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACG : 278871 116 : AspTrpAla<-><-><->AsnAlaArgHisLeuAsnAspArgAsnIleMetGlyMetA : 132 ||||||:!! ::: !|||... ...:::|||...|||||| !! ! AspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMetArgAspS 278872 : GACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTGAGGGACA : 278931 133 : snAlaAsnTyrGlyArgLysLeuValValValSerAlaPhePheMetTyrSerSerTy : 151 :!|||!.. !||||||...|||!.!:!! !!|||||| !||||||||||||.!! erAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGl 278932 : GCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGG : 278988 152 : rIlePhePheTyrIleAlaValProIleThrValGlyArgIleProAlaGlnAspGly : 170 :!!|||!:! ! !!.!:!!|||:!: !!.!! !|||! ! ! ||| yValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIleAsp--- 278989 : AGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGAC--- : 279045 171 : AsnPheThrPheIlePheLeuProPheProSerSerMetArgIleThrAspTyrArgG : 190 ||| ||| ! ! !! !! ! !!||||||! !! ! !!:!! !||| ||| AsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgT 279046 : AATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCGCGTA : 279102 191 : lnSerProValAsnGluIlePheTyrPheLeuGlnCysLeuAlaGlyValValLeuHi : 209 |||||| ! !|||||| ! ! |||:!!||||||||||||!.! !!||||||:! hrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValLeuTy 279103 : CCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATA : 279159 210 : sIleIleThrValGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGly : 228 ! :!!||||||||||||||||||||| !|||..!|||!.!:!!|||!.!|||||| rSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCysGly 279160 : CTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGG : 279216 229 : GlnMetGlnIleLeuMetAsnTrpLeuGlyTyrLeuValAsnGly<->ArgAlaAspM : 247 |||.!.::!||||||:!!!.. !|||! ! ! |||:!!:!!||| !:!!.! ! GlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLysGlyArgL 279217 : CAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGGAGGA : 279276 248 : etSerLysSerLeu<->AspGlyArgIleAlaSerIleValGluGlnHisValArgIl : 265 !||| !||| ! !!: !|||:!:!.!..!|||:!!|||!!.|||:!!!:!|| ysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLysIl 279277 : AGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGAT : 279333 266 : eLeu : 266 |||| eLeu 279334 : ACTG : 279338 vulgar: gi|805766356|ref|XP_012135238.1| 0 266 . KQ414889.1 278525 279338 + 397 M 72 216 G 0 3 M 46 138 G 0 9 M 51 153 G 1 0 M 73 219 G 0 3 M 8 24 G 0 3 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278526 279338 397 + . gene_id 12 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278526 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278526 279338 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278526 279338 397 + . alignment_id 12 ; Query gi|805766356|ref|XP_012135238.1| ; Align 278526 1 216 ; Align 278745 73 138 ; Align 278892 119 153 ; Align 279045 171 219 ; Align 279267 244 24 ; Align 279294 252 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 386 Query range: 0 -> 266 Target range: 284472 -> 286288 1 : MetGlnLysAlaThrAlaLysAlaGluGlnGluTyrLeuLysAsnValAspLeuSerV : 20 ||| ! !!.!|||:!!..!.!!!!:..! !!:: !! !:!! ! ! !|||| MetAlaLeuValThrSerSerThrAspSerThrTrpAspThrAspTrpMetTyrSerV 284473 : ATGGCACTGGTCACTTCTTCAACCGATTCGACGTGGGACACGGATTGGATGTACAGCG : 284530 21 : alArgLeuAsnArgTrpIleLeuLysProIleAlaAlaTrpProGluSerSerThrVa : 39 ||!:!:!!|||||||||.!!||||||||||||!.!!.!|||||| ||| ! !|| alGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuCysVa 284531 : TACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGT : 284587 40 : lSerProIleLysLysTyrLeuGlyTrpPheValHisIleIleCysTyrSerLeuLeu : 58 |!!! !!:!::!!||| ! !..! ! !!:!! :!!||| !!! !! !|||:!! lThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIle 284588 : GACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATA : 284644 59 : SerPheLeuPheValProCysLeuThrPheLeuIleLeuGlu<->ValAsnAspThrT : 77 .!!||||||!!.||||||||| ! !! ! !:!:|||!!: ..!..!||| ! GlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuA 284645 : GGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCG : 284704 78 : yrAsnArgIleLysLeuIleGlyProLeuSerPhePheLeuMetSerTyrLeuLysTy : 96 !!!..!:!||||||:!!||||||||||||||||||! !:!!|||:!! :!!||||| spThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleLysTy 284705 : ACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTA : 284761 97 : rTyrLeuMetLeuLeuHisLysAsnAspIleLeuLysCysValGlnGlnValGlnArg : 115 ||||:!!:!::!!! !!.! ..! ! ||| !:!!||||||:!!.!.:!!!:: ! rTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIleArgAla 284762 : TTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCG : 284818 116 : Asp{Tr} >>>> Target Intron 1 >>>> {p}AlaAsnAlaArgHisLeuA : 124 |||{||} 1012 bp {|} !::: !!! ... . Asp{Tr}++ +-{p}LeuSerHisSerGlnGluG 284819 : GAC{TG}gt.........................ac{G}CTTTCGCATAGtcaagaag : 285857 125 : snAspArgAsnIleMetGlyMetAsnAlaAsnTyrGlyArgLysLeuValValValSe : 143 ..:::|||...|||||| !! !:!|||!.. !||||||...|||!.!:!! !!!! luGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCy 285858 : aggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTG : 285914 144 : rAlaPhePheMetTyrSerSerTyrIlePhePheTyrIleAlaValProIleThrVal : 162 !||| !||||||||||||.!! .!!|||!:! !! !.!:!!|||:!: !..! sAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysThr 285915 : CGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACA : 285971 163 : GlyArgIleProAlaGlnAspGlyAsnPheThrPheIlePheLeuProPheProSerS : 182 ! !|||! ! ! ||| ||| ||| ! ! !! !! ! !!||||||! !! ValArgThrGluIleIleAsp---AsnGluThrValArgSerGlnAlaPheProIleT 285972 : GTACGCACGGAGATCATCGAC---AACGAGACCGTGAGATCTCAAGCGTTCCCGATCT : 286028 183 : erMetArgIleThrAspTyrArgGlnSerProValAsnGluIlePheTyrPheLeuGl : 201 ! !!:!! !||| ||| |||||| ! !|||||| ! ! |||:!!|| yrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGl 286029 : ATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCA : 286085 202 : nCysLeuAlaGlyValValLeuHisIleIleThrValGlyAlaCysSerLeuAlaAla : 220 ||||||||||!.! !!|||:!!:!! :!!||||||||||||||||||||||||||| nCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAla 286086 : ATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCT : 286142 221 : ThrPheAlaValHisAlaCysGlyGlnMetGlnIleLeuMetAsnTrpLeuGlyTyrL : 240 ..!|||!.!:!!|||!.!|||||||||.!.::!||||||:!!!.. !|||! ! ! | ValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysL 286143 : GTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGC : 286202 241 : euValAsnGlyArgAlaAspMetSer<-><->LysSerLeuAspGlyArgIleAlaSe : 257 |||||:!!||| ! !! ! !!.! !..!!!! !!!: !|||:!:!.!.. euValAspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAs 286203 : TCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGA : 286259 258 : rIleValGluGlnHisValArgIleLeu : 266 !|||:!!|||!!.|||:!!!:!|||||| pIleIleGluHisHisLeuLysIleLeu 286260 : TATCATCGAGCATCATCTGAAGATACTG : 286288 vulgar: gi|805766356|ref|XP_012135238.1| 0 266 . KQ414889.1 284472 286288 + 386 M 72 216 G 0 3 M 44 132 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 52 156 G 1 0 M 78 234 G 0 6 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284473 286288 386 + . gene_id 13 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284473 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284473 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286288 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286288 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284473 286288 386 + . alignment_id 13 ; Query gi|805766356|ref|XP_012135238.1| ; Align 284473 1 216 ; Align 284692 73 132 ; Align 285839 118 156 ; Align 285995 171 234 ; Align 286235 249 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 377 Query range: 16 -> 267 Target range: 274380 -> 275136 17 : AspLeuSerValArgLeuAsnArgTrpIleLeuLysProIleAlaAlaTrpProGluS : 36 |||! !|||:!!!:!||||||||||||.!!||||||||||||!.!||||||||| !: AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuA 274381 : GACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAG : 274438 37 : erSerThrValSerProIleLysLysTyrLeuGlyTrpPheValHisIleIleCysTy : 55 !!||| !!..!!!! !.!!:!!::! !|||..! ...::: ...:::||||| laSerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTy 274439 : CCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctA : 274495 56 : rSerLeuLeuSerPheLeuPheValProCysLeuThrPheLeuIleLeuGluValAsn : 74 |!!!!!!:!! !! ! ! !!:!!||| !!:!! ! !:!!||||||! !! !.!. rCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGlu 274496 : CTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAA : 274552 75 : AspThrTyrAsnArgIleLysLeuIleGlyProLeuSerPhePheLeuMetSerTyrL : 94 ..! !:!! !:!:!:||||||:!!|||||||||.!! !!::!!!!!:.!! : SerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyI 274553 : AGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAA : 274612 95 : euLysTyrTyrLeuMetLeuLeuHisLysAsnAspIleLeuLysCysValGlnGlnVa : 113 !!!!.||| ! !:!!||||||!.!!..!!.!!:|||! ! ||||||:!!!!.:! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 274613 : TTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACAT : 274669 114 : lGlnArgAspTrpAlaAsnAlaArgHisLeuAsnAspArgAsnIleMetGlyMetAsn : 132 !|||! !|||||| !! !!.!! !...! !.!.|||!:!.!.:!:||| !! !||| tGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsn 274670 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAAC : 274726 133 : AlaAsnTyrGlyArgLysLeuValValValSerAlaPhePheMetTyrSerSerTyrI : 152 |||!!. !|||||| ! :!!!.!:!! !!!!!||| |||||| ! !!!.!! !: AlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 274727 : GCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTC : 274786 153 : lePhePheTyrIleAlaValProIleThrValGlyArgIleProAlaGlnAspGlyAs : 171 !!! !!:!! !:!: !..! !!.!!|||:!! !! !:!!! !!.! !:!!! !!. euCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluTh 274787 : TCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGAC : 274843 172 : nPheThrPheIlePheLeuProPheProSerSerMetArgIleThrAspTyrArgGln : 190 ! ||| ! !.!.||||||! ! !:!!! !! !!:!|||..!! ! ! rArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThr 274844 : CAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACG : 274900 191 : SerProValAsnGluIlePheTyrPheLeuGlnCysLeuAlaGlyValValLeuHisI : 210 ||||||..!||||||||| !! ! !! !|||! !:!!:!!||| !!:!!:!!:!! SerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnS 274901 : AGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATT : 274960 211 : leIleThrValGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGlyGl : 229 ! !.!!|||||||||! !||||||||||||..!||||||!.!||||||! !||||| erSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGl 274961 : CGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCA : 275017 230 : nMetGlnIleLeuMetAsnTrpLeuGlyTyrLeuValAsnGlyArgAlaAspMetSer : 248 |:!!...:!:||||||! |||:!! ! ! !!!|||||| ! ! !|||...::: nLeuSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsn 275018 : GTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaat : 275074 249 : LysSerLeu<->AspGlyArgIleAlaSerIleValGluGlnHisValArgIleLeuL : 267 |||:::::: ..!..!|||!.! !:!!||||||!!.|||:!!|||:!!|||! LysAsnValTyrPheSerGluIleGlyValValValGluHisHisLeuArgValLeuA 275075 : aaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTCA : 275134 268 : ys : 267 :! rg 275135 : GG : 275136 vulgar: gi|805766356|ref|XP_012135238.1| 16 267 . KQ414889.1 274380 275136 + 377 M 235 705 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274381 275136 377 + . gene_id 14 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274381 275136 . + . KQ414889.1 exonerate:protein2genome:local exon 274381 275136 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274381 275136 377 + . alignment_id 14 ; Query gi|805766356|ref|XP_012135238.1| ; Align 274381 17 705 ; Align 275089 252 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 341 Query range: 13 -> 390 Target range: 204224 -> 206401 14 : LysAsnValAspLeuSerValArgLeuAsnArgTrpIleLeuLysProIleAlaAlaT : 33 :!!:!!:!! ! !:!!..!|||!!! !:! !|||||| ! !:!!!.!|||| GluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaT 204225 : GAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGT : 204282 34 : rpProGluSerSerThrValSerProIleLysLysTyrLeuGlyTrpPheValHisIl : 52 ||||| !! !!.! !||||||.!!! !!:! :!! !! ! .!.! !|||:! rpProIleProValAsnSerSerProPheThrArgLeuValArgArgIleGluHisVa 204283 : GGCCGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGT : 204339 53 : eIleCysTyrSerLeuLeuSerPheLeuPheValProCysLeuThrPheLeuIleLeu : 71 !:!! !||| |||... ...:!!.!!|||||| !!||| !!:!:!!.!!||| lValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheLeu 204340 : AGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTG : 204396 72 : GluValAsnAspThrTyrAsnArgIleLysLeuIleGlyProLeuSerPhePheLeuM : 91 :!!! !!!.:!! ! ! ! !|||:!:|||:!!:!!||||||:!! ! !! ! !! LysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSerI 204397 : AAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCA : 204456 92 : etSerTyrLeuLysTyrTyrLeuMetLeuLeuHisLysAsnAspIleLeuLysCysVa : 110 !:..!!:!!!!||||||! !:!!!!:|||! !!..! :!! ! |||! !||| !!:! leGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSerLe 204457 : TACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGTTT : 204513 111 : lGlnGlnValGlnArgAspTrpAlaAsnAlaArgHisLeuAsnAspArgAsnIleMet : 129 !.!. :!!::!||||||||| !.!.|||! ! !! !||| ||| |||.!. uAsnThrIleArgArgAspTrpIleGluAlaThrAspGluAsn---ArgLeuIlePhe 204514 : GAACACCATCAGACGCGACTGGATAGAGGCTACGGATGAAAAT---CGGTTGATTTTC : 204567 130 : GlyMetAsnAlaAsnTyrGlyArgLysLeuValValValSerAlaPhePheMetTyrS : 149 !! !!!.|||!!. !||||||!:!:!!:!!:!!:!!:!!||| ! !||||||. ArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetTyrG 204568 : CGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGTACG : 204627 150 : erSerTyrIlePhePheTyrIleAlaValProIleThrValGlyArgIleProAlaGl : 168 !!.!! !:!:! !!:! ! !:!!|||:!: ! !|||! !||| !.!!! lyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleValThrPr 204628 : GCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTAACACC : 204684 169 : nAspGlyAsnPheThrPheIlePheLeuProPheProSerSerMetArgIleThrAsp : 187 ||| ||| !!|||.!.! ||||||! !||| ! ... ... ::: oAsp---AsnValThrIleArgProLeuProCysProValTyrPheValPhePheAsn 204685 : TGAT---AACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaac : 204738 188 : TyrArgGlnSerProValAsnGluIlePheTyrPheLeuGlnCysLeuAlaGlyValV : 207 ! !:!!::|||||| ! !!|||||| !!!:!.!.|||||| !:!!|||||| !!| GluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheV 204739 : GAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTG : 204798 208 : alLeuHisIleIleThrValGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAl : 226 || !:!! !:!!! ! !|||.!!|||.!!:!!..!||| !|||!.!:!!||||| alThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAl 204799 : TTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGC : 204855 227 : aCysGlyGlnMetGlnIleLeuMetAsnTrpLeuGlyTyrLeuValAsnGlyArgAla : 245 ||||.!!..!:!!::!||||||:!!||| !:!!..! ||||||:!! ! !! ! aCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAlaAsp 204856 : GTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCGGAC : 204912 246 : AspMetSerLysSerLeuAspGlyArgIleAlaSerIleValGluGlnHisValArgI : 265 ! ..!! ! !:!! !! !!!:!||||||..!||||||||| ! !!...!!:!| MetThrGluThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrLysI 204913 : ATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGAAGA : 204972 266 : leLeu{Ly} >>>> Target Intron 1 >>>> {s}PheLeuAspLeuThrGl : 273 || !{!:} 1047 bp {!} ! !! ! !:!! leLys{Ar}++ ++{g}AsnThrGlyArgSerCy 204973 : TAAAG{AG}gt.........................ag{A}AATACAGGACGATCGTG : 206043 274 : uLysThrLeuArgTyrIleAlaLeuValGluPheLeuGlyCysThrThrValLeuCys : 292 ! ! ! !! ! ! !:!! !:!! ||| !||||||:!! !! ! ! sPheArgAsnGlyArgThrIleIleGlnGlnArgLeu***CysThrSerArgCysArg 206044 : TTTTAGGAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGA : 206100 293 : LeuLeuSerTyrTyrValLeuValGluTrpSerThrAsnAspArgIleSerSerAlaT : 312 ! !||| !:!!! !!.!!!!:!! ! !:::!!|||:::! !!!!.!!! !||| !! TyrLeuValHisSerAlaPheLeuTyrTyrAlaThrSerGlySerPheLeuSerIleL 206101 : TATCTTGTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCA : 206160 313 : hrTyrAlaValLeuPheValSerPheThrPheAsnIlePheIleTyrCysTyrIleGl : 331 !! !!.!:!! !!:! !!!! !|||!:: ::::::|||::: !:!! ysCysValIleThrTyrGln***SerThrTrpIleLeuTrpIlePheLeuThrLeuTh 206161 : AGTGCGTGATTACGTATCAATGAAGTACGTGGattctttggatttttttaaCTCTTAC : 206217 332 : yGluLeuValAlaGluGlyCysArgGln-----IleAlaGluIleSerTyrMetIleA : 349 !..! !:!!.!! ! !||| #####:!:!.! !! !|||! !! !:!:: rArgSerIleThrIlePheAsnArgThr#####ValGlyLeuThrSerCysThrValA 206218 : TAGAAGTATTACCATTTTTAACAGAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 350 : spTrpTyrArgLeuLeuGlyLysArgLysLeuSerIleIleLeuIleMetGlnMetSe : 368 !!||||||||||||! !..!!:!!.! !! !|||!!:|||||||||!!: ||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 369 : rHisSerThrIleLysLeuThrAlaGlyAsnIleValIleLeuSerTyrSerLysPhe : 387 |:!!! ! !!||||||||||||||||||!!.!!: !! !:!!|||! :!!!..||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 388 : GlyAspVal : 390 !|||||| ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: gi|805766356|ref|XP_012135238.1| 13 390 . KQ414889.1 204224 206401 + 341 M 111 333 G 1 0 M 44 132 G 1 0 M 96 288 S 0 2 5 0 2 I 0 1043 3 0 2 S 1 1 M 73 219 F 0 5 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204225 206401 341 + . gene_id 15 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 204225 204979 . + . KQ414889.1 exonerate:protein2genome:local exon 204225 204979 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 204980 204981 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 204980 206026 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206025 206026 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206027 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206027 206401 . + . insertions 0 ; deletions 0 ; frameshifts 5 KQ414889.1 exonerate:protein2genome:local similarity 204225 206401 341 + . alignment_id 15 ; Query gi|805766356|ref|XP_012135238.1| ; Align 204225 14 333 ; Align 204558 126 132 ; Align 204690 171 288 ; Align 206028 268 219 ; Align 206252 341 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 313 Query range: 292 -> 403 Target range: 214605 -> 215130 293 : LeuLeuSerTyrTyrValLeuValGluTrpSerThrAsnAspArgIleSerSerAlaT : 312 ::::::...::: :::||| ||||||!:!:!!|||:!! !! !!!!!!!!.!| IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 313 : hrTyrAlaValLeuPheValSerPheThrPheAsnIlePheIleTyrCysTyrIleGl : 331 |||||!.!||||||!:!:!!|||...||||||||||||||||||:::||||||||||| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 332 : yGluLeuValAlaGluGly >>>> Target Intron 1 >>>> CysArgGlnI : 341 ||||||||||:!!||| ! 123 bp |||!:!:!!: yGluLeuValSerGluGln++ ++CysLysLysV 214721 : CGAGCTTGTGTCTGAACAGgt.........................agTGCAAAAAGG : 214873 342 : leAlaGluIleSerTyrMetIleAspTrpTyrArgLeuLeuGlyLysArgLysLeuSe : 360 !!!.!|||:!!||||||||||||!!:||||||||||||! !|||!!.!:!||||||!! alGlyGluValSerTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCy 214874 : TCGGAGAAGTATCGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTG : 214930 361 : rIleIleLeuIleMetGlnMetSerHisSerThrIleLysLeuThrAlaGlyAsnIle : 379 ! !|||||||||||| !||||||:!!|||:!!:!!|||!!!||||||||||||!!: sCysIleLeuIleMetAlaMetSerAsnSerSerValLysPheThrAlaGlyAsnMet 214931 : TTGCATTTTGATCATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATG : 214987 380 : ValIleLeuSerTyrSerLysPheGlyAsp >>>> Target Intron 2 >>>> : 390 ||| !|||||| !|||! |||.!!..! 69 bp ValGluLeuSerIleSerThrPheSerSer++ + 214988 : GTAGAACTGTCTATCAGCACTTTCAGCAGTgt.........................a : 215087 391 : ValValLysSerAlaPheAlaPheLeuAsnValLeuArgThr : 403 ||||||::!!!!:!! !!||||||||||||!.!||||||||| +ValValArgThrSerValAlaPheLeuAsnAlaLeuArgThr 215088 : gGTTGTTCGAACATCGGTTGCCTTCTTAAACGCGTTACgaaca : 215130 vulgar: gi|805766356|ref|XP_012135238.1| 292 403 . KQ414889.1 214605 215130 + 313 M 45 135 5 0 2 I 0 119 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 215130 313 + . gene_id 16 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215019 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215019 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 215020 215021 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 215020 215088 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 215087 215088 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 215089 215130 . + . KQ414889.1 exonerate:protein2genome:local exon 215089 215130 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 215130 313 + . alignment_id 16 ; Query gi|805766356|ref|XP_012135238.1| ; Align 214606 293 135 ; Align 214864 338 156 ; Align 215089 390 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 307 Query range: 170 -> 336 Target range: 300189 -> 301794 171 : AsnPheThrPheIlePheLeuProPheProSerSerMetArgIleThrAspTyrArgG : 190 |||!:!|||!:!! ! ||| !!!:!|||.!!! ! !!.!!! !||| !:! AsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnT 300190 : AATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAA : 300247 191 : lnSerProValAsnGluIlePheTyrPheLeuGlnCysLeuAlaGlyValValLeuHi : 209 ||||||..! !!|||||| :::|||......|||.!!|||!.!:!!:!!:!!:! hrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTy 300248 : CCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTA : 300304 210 : sIleIleThrValGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGly : 228 !! !:!:|||..!!.!|||! !||||||||||||! !|||!.!..!||| !|||||| rAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGly 300305 : CAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGA : 300361 229 : GlnMetGlnIleLeuMetAsnTrpLeuGlyTyrLeuValAsnGlyArgAlaAspMetS : 248 |||!!:||||||! !||| ! |||! ! !!||||||.!. !!! !!.!!!:! !. GlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrGlyGluLysA 300362 : CAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGGGAGAGAAGG : 300421 249 : erLysSerLeuAspGlyArgIleAlaSerIleValGluGlnHisValArgIleLeu{L : 267 .! ! .!!! !||| ! !:!!!.! ||||||..!.!.||||||!:!:!!|||{! spAspGlyProAspProLeuValVal---IleValArgAspHisValLysValLeu{A 300422 : ACGACGGTCCTGATCCTTTGGTCGTT---ATCGTTCGAGATCACGTGAAGGTTTTA{A : 300475 268 : y} >>>> Target Intron 1 >>>> {s}PheLeuAspLeuThrGluLysThr : 275 :} 140 bp {!}||| ! ! !..!|||:!!||| r}++ ++{g}PheAlaLysAsnValGluGluThr 300476 : G}gt.........................ag{A}TTTGCAAAGAACGTTGAGGAAACT : 300639 276 : LeuArgTyrIleAlaLeuValGluPheLeuGlyCysThrThrValLeuCysLeuLeuS : 295 |||||| !!.!!..!|||||||||.!!!!!! !! !||| !:!!||||||||||||. LeuArgAspPheCysLeuValGluIlePheGluSerThrLeuIleLeuCysLeuLeuG 300640 : TTGCGTGACTTCTGCTTAGTGGAAATCTTCGAGTCCACGCTGATTTTGTGTTTGCTCG : 300699 296 : erTyrTyrValLeuVal >>>> Target Intron 2 >>>> GluTrpSerThr : 304 .!|||||| !|||||| 970 bp ||||||..!!.! luTyrTyrCysLeuVal++ ++GluTrpGlnAsn 300700 : AATACTACTGTTTGGTGgt.........................agGAATGGCAAAAT : 301696 305 : AsnAspArgIleSerSerAlaThrTyrAlaValLeuPheValSerPheThrPheAsnI : 324 !:!|||! !|||:!!! ! !|||!:! !..!|||!!...!|||||||||||||||| SerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAsnI 301697 : AGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATA : 301756 325 : lePheIleTyrCysTyrIleGlyGluLeuValAlaGlu : 336 ||||||||!:!|||||||||||||||:!!:!!:!!||| lePheIlePheCysTyrIleGlyGluIleLeuSerGlu 301757 : TATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAA : 301794 vulgar: gi|805766356|ref|XP_012135238.1| 170 336 . KQ414889.1 300189 301794 + 307 M 86 258 G 1 0 M 9 27 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 33 99 5 0 2 I 0 966 3 0 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300190 301794 307 + . gene_id 17 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300190 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300190 300476 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 300616 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300615 300616 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300617 300716 . + . KQ414889.1 exonerate:protein2genome:local exon 300617 300716 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300717 300718 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300717 301686 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301685 301686 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301687 301794 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301794 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300190 301794 307 + . alignment_id 17 ; Query gi|805766356|ref|XP_012135238.1| ; Align 300190 171 258 ; Align 300448 258 27 ; Align 300618 268 99 ; Align 301687 301 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 297 Query range: 7 -> 267 Target range: 289705 -> 290482 8 : AlaGluGlnGluTyrLeuLysAsnValAspLeuSerValArgLeuAsnArgTrpIleL : 27 :!!.!..!....||| !! !:!!:!! !! !!!! !!..!||| !!.!||||||| SerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleL 289706 : TCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCT : 289763 28 : euLysProIleAlaAlaTrpPro<->GluSerSerThrValSerProIleLysLysTy : 45 |||||||||||!.! !!::||| ! ! !||| !!.!||| ! !:!!::! euLysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgTh 289764 : TGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAAC : 289820 46 : rLeuGlyTrpPheValHisIleIleCysTyrSerLeuLeuSerPheLeuPheValPro : 64 !..! !!!.:!! !:!::!!|||! !|||:!!|||..!|||:!!.!.|||||| rAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValPro 289821 : GGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCG : 289877 65 : CysLeuThrPheLeuIleLeuGluValAsnAspThrTyrAsnArgIleLysLeuIleG : 84 ! ! ! ! !:!!:!!!!!...! !||||||! ! !!!.. !:!!||| !:!!| PheSerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuG 289878 : TTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCG : 289937 85 : lyProLeuSerPhePheLeuMetSerTyrLeuLysTyrTyrLeuMetLeuLeuHisLy : 103 ||||||||!!!|||! !|||! !!!!:!!!!||||||! !! !.!. !:!! ! lyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGl 289938 : GACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGG : 289994 104 : sAsnAspIleLeuLysCysValGlnGlnValGlnArgAspTrpAlaAsnAlaArgHis : 122 :::! ||| !:::||||||:!!!!.:!!:!!||||||||| !! !||| !! ySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAsp 289995 : TTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGAC : 290051 123 : LeuAsnAspArgAsnIleMetGlyMetAsnAlaAsnTyrGlyArgLysLeuValValV : 142 !:!! !!||| !|||||| !! !!!.!!.. .!!|||!!.|||:!! !: GluAspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysL 290052 : GAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAAC : 290111 143 : alSerAlaPhePheMetTyrSerSerTyrIlePhePheTyrIleAlaValProIleTh : 161 !!!!!|||.!!|||:!!|||! !.!! !:!:! !!:! !!! !!.!:!!|||:!: euCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPh 290112 : TGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTT : 290168 162 : rValGlyArgIleProAlaGlnAspGlyAsnPheThrPheIlePheLeuProPhePro : 180 ! ! !!:! ::! !:!!|||||| ! |||.!!! ! !||| !!!:!||| eSerLysLys------SerValAsnGlyAsnValThrIleArgProLeuThrTyrPro 290169 : CTCGAAGAAG------AGCGTGAACGGTAACGTGACTATCAGACCTCTAACTTATCCC : 290219 181 : SerSerMetArgIleThrAspTyrArgGlnSerProValAsnGluIlePheTyrPheL : 200 .!!! ! !..!.!! !||| !!:!:!!||||||!.! !!|||||| !!!:!! !: GlyTyrGluGluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysM 290220 : GGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTA : 290279 201 : euGlnCysLeuAlaGlyValValLeuHisIleIleThrValGlyAlaCysSerLeuAl : 219 !!!!.|||:!! !! !:!!:!! ! ! !||||||:!!!.!|||! !||||||.! etHisCysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuTh 290280 : TGCACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGAC : 290336 220 : aAlaThrPheAlaValHisAlaCysGlyGlnMetGlnIleLeuMetAsnTrpLeuGly : 238 !.!!! !||||||..!|||.!!|||||||||!!::!!|||! !! !!.. !!|||! ! rThrIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGlu 290337 : GACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAG : 290393 239 : TyrLeuValAsnGlyArgAlaAspMetSerLysSerLeuAspGlyArgIleAlaSerI : 258 !!|||..!!!. !! !! ! :!!..!|||.!!:!!..!! !|||:!:||| !: AspLeuThrLysArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValV 290394 : GATCTGACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTG : 290453 259 : leValGluGlnHisValArgIleLeuLys : 267 !!|||... ||||||..!||||||||| alValSerGlyHisValGluIleLeuLys 290454 : TTGTGAGCGGTCACGTGGAGATCTTGAAG : 290482 vulgar: gi|805766356|ref|XP_012135238.1| 7 267 . KQ414889.1 289705 290482 + 297 M 27 81 G 0 3 M 130 390 G 2 0 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289706 290482 297 + . gene_id 18 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289706 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289706 290482 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289706 290482 297 + . alignment_id 18 ; Query gi|805766356|ref|XP_012135238.1| ; Align 289706 8 81 ; Align 289790 35 390 ; Align 290180 167 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 284 Query range: 294 -> 390 Target range: 210645 -> 211932 295 : SerTyrTyrValLeuValGluTrpSerThrAsnAspArgIleSerSerAlaThrTyrA : 314 ||| ! !:!:!!||| !||||||..!:!!!!.|||! !||||||||| !|||||| SerGlnPheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrI 210646 : TCGCAATTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACA : 210703 315 : laValLeuPheValSerPheThrPheAsnIlePheIleTyrCysTyrIleGlyGluLe : 333 !||||||.!!..!||| !!||||||||||||||||||!:!|||||||||||||||:! leValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluVa 210704 : TAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGT : 210760 334 : uValAlaGluGly >>>> Target Intron 1 >>>> CysArgGlnIleAlaG : 343 !:!!|||||| 999 bp !:!!:!!!.!| lLeuAlaGluGln++ ++ThrValLysValGlyG 210761 : GTTGGCTGAACAggt.........................agACAGTAAAAGTTGGAG : 211789 344 : luIleSerTyrMetIleAspTrpTyrArgLeuLeuGlyLysArgLysLeuSerIleIl : 362 ||! ||||||||||||||||||||||||:!!! !||||||!:! ||| !:!! luLysSerTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValValPr 211790 : AAAAGTCTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACC : 211846 363 : eLeuIleMetGlnMetSerHisSerThrIleLysLeuThrAlaGlyAsnIleValIle : 381 !|||!!:!!:...|||||||||||||||! !|||:!!||||||||||||:!!:!!:!! oLeuMetIleSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleVal 211847 : CTTGATGATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTT : 211903 382 : LeuSerTyrSerLysPheGlyAspVal : 390 |||||| !|||!..|||||||||||| LeuSerIleSerSerPheGlyAspVal 211904 : CTTTCAATCAGTAGTTTCGGTGACGTA : 211932 vulgar: gi|805766356|ref|XP_012135238.1| 294 390 . KQ414889.1 210645 211932 + 284 M 43 129 5 0 2 I 0 995 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210646 211932 284 + . gene_id 19 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 210646 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210646 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211932 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211932 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210646 211932 284 + . alignment_id 19 ; Query gi|805766356|ref|XP_012135238.1| ; Align 210646 295 129 ; Align 211774 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 279 Query range: 292 -> 405 Target range: 286854 -> 287338 293 : LeuLeuSerTyrTyrValLeuValGluTrpSerThrAsnAspArgIleSerSerAlaT : 312 :!!! !|||! ! |||!!! !||||||..! !!:!!!:! !|||.!!!!! !| MetTyrSerLeuSerValPhe***GluTrpGluGlnSerGluThrIleGlyThrIleT 286855 : ATGTACTCGTTGTCAGTTTTCTAGGAATGGGAGCAAAGTGAAACTATAGGAACGATCA : 286912 313 : hrTyrAlaValLeuPheValSerPheThrPheAsnIlePheIleTyrCysTyrIleGl : 331 |||||..!..!|||.!.||||||||||||||||||:!!|||||| !||||||||||| hrTyrCysThrLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGl 286913 : CGTATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGG : 286969 332 : yGluLeuValAlaGluGly >>>> Target Intron 1 >>>> CysArgGlnI : 341 ||||:!!:!!:!!||| 74 bp ||| !:!!: yGluIleLeuSerGluGln++ ++CysLeuLysV 286970 : TGAAATTCTCTCCGAACaggt.........................agtGCTTAAAAG : 287073 342 : leAlaGluIleSerTyrMetIleAspTrpTyrArgLeuLeuGlyLysArgLysLeuSe : 360 !!!.! ! !!!!||||||||||||||||||||||||! !||||||! ! ! !.! alGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGl 287074 : TCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGG : 287130 361 : rIleIleLeuIleMetGlnMetSerHisSerThrIleLysLeuThrAlaGlyAsnIle : 379 !:!:|||||||||.!. :!!|||:!!|||:!!||||||||||||||||||!!.||| yLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIle 287131 : TTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATC : 287187 380 : ValIleLeuSerTyrSerLysPheGlyAsp >>>> Target Intron 2 >>>> : 390 :!! !||||||! |||!..||| !!..! 71 bp IleAspLeuSerLeuSerSerPheCysSer++ + 287188 : ATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt.........................a : 287289 391 : ValValLysSerAlaPheAlaPheLeuAsnValLeuArgThrValThr : 405 |||:!!|||||||||||||||!:!|||!:!:!!|||||||||:!!||| +ValLeuLysSerAlaPheAlaTyrLeuSerLeuLeuArgThrLeuThr 287290 : gGTGTTGAAATCGGCATTCGCATATCTGAGCTTATTACGTACGCTAACC : 287338 vulgar: gi|805766356|ref|XP_012135238.1| 292 405 . KQ414889.1 286854 287338 + 279 M 45 135 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286855 287338 279 + . gene_id 20 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286855 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286855 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287220 287221 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 287220 287290 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 287289 287290 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 287291 287338 . + . KQ414889.1 exonerate:protein2genome:local exon 287291 287338 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286855 287338 279 + . alignment_id 20 ; Query gi|805766356|ref|XP_012135238.1| ; Align 286855 293 135 ; Align 287064 338 156 ; Align 287291 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 253 Query range: 4 -> 267 Target range: 236813 -> 237599 5 : ThrAlaLysAlaGluGlnGluTyrLeuLysAsnValAspLeuSerValArgLeuAsnA : 24 |||!.! .!!||| .!. ! !:! !|||! !|||:!!!:!! !|||| ThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnA 236814 : ACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATC : 236871 25 : rgTrpIleLeuLysProIleAlaAlaTrpProGluSerSerThrValSerProIleLy : 43 ||||| :!!||| !|||!.!.!!||||||:!!! !||| ||| !:!!:! rgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSer------SerAsnLeuGl 236872 : GATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCG------TCGAACCTCGA : 236922 44 : sLysTyrLeuGlyTrpPheValHisIleIleCysTyrSerLeuLeuSerPheLeuPhe : 62 !!:! !!:!!..! ! .!.:!!:!!:!:|||||||||!!! !:!! !|||! !.!. uArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIle 236923 : GAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATA : 236979 63 : ValProCysLeuThrPheLeuIleLeuGluValAsnAspThrTyrAsnArgIleLysL : 82 :!!||||||! ! ! !|||!!:|||||| !... ! !|||!..!:!:!:|||: IleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysI 236980 : ATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAA : 237039 83 : euIleGlyProLeuSerPhePheLeuMetSerTyrLeuLysTyrTyrLeuMetLeuLe : 101 !!:!!||| !!|||||| !!:::!!.!.!!! !:!!!..||| !:!!:!!||||| leLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLe 237040 : TACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCT : 237096 102 : uHisLysAsnAspIleLeuLysCysValGlnGlnValGlnArgAspTrpAlaAsnAla : 120 |!..:::!!. !|||! ! ! ! ! !!.!.!!.:!!:!!! !|||||| !!...!! uArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThr 237097 : GCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACG : 237153 121 : ArgHisLeuAsnAspArgAsnIleMetGlyMetAsnAlaAsnTyrGlyArgLysLeuV : 140 ... ... :::...:::||| !! ! !!|||!!.!:!.!!||| ! !! ThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaA 237154 : acgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGG : 237213 141 : alValValSerAlaPhePheMetTyrSerSerTyrIlePhePheTyrIleAlaValPr : 159 .!:!! !!!!.!!.!!|||!!::!!.!!.!! :!! !:!! !:!! !..! ! laIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAl 237214 : CGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGC : 237270 160 : oIleThrValGlyArgIleProAlaGlnAspGlyAsnPheThrPheIlePheLeuPro : 178 ! !|||..! ! !:!! !!.! !:!! !!.! ! !!!. ! ! |||||| aSerThrThrMetValValValValGlyAsnLysThrThrIleLeuArgValLeuPro 237271 : GTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGCGTGCTGCCC : 237327 179 : PheProSerSerMetArgIleThrAspTyrArgGlnSerProValAsnGluIlePheT : 198 !!.|||! !! !! !!:!! ! ! ! !!:! !!:!!|||!!:||| !! LeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnAspIleValV 237328 : TTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGACATCGTTG : 237387 199 : yrPheLeuGlnCysLeuAlaGlyValValLeuHisIleIleThrValGlyAlaCysSe : 217 !!!.! !|||! !|||:!!||| !!:!! !:!!! !! !.!!:!!.!!!.! || alLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSerValIleSe 237388 : TTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAGTGTTATAAG : 237444 218 : rLeuAlaAlaThrPheAlaValHisAlaCysGlyGlnMetGlnIleLeuMetAsnTrp : 236 ||||.!!::!.!!.!..!! !||||||! !||||||:!!...:!::!!||| ! ! rLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValValMetLeuSer 237445 : CCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTTATGTTGTCG : 237501 237 : Leu<->GlyTyrLeuValAsnGlyArgAlaAspMetSerLysSerLeuAspGlyArgI : 255 :!! ! !!:!:!! !.!.!.!||| ! !!.! ! ..!! ! !! !..!| IleGluAspPheValSerGluAlaArgArgArgGlyLysAspAspHisPheAspGluI 237502 : ATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATCATTTCGACGAAA : 237561 256 : leAlaSerIleValGluGlnHisValArgIleLeuLys : 267 || !!!!!|||||||||:!!|||:!!|||:!:|||||| leProThrIleValGluGluHisLeuArgValLeuLys 237562 : TACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAG : 237599 vulgar: gi|805766356|ref|XP_012135238.1| 4 267 . KQ414889.1 236813 237599 + 253 M 33 99 G 2 0 M 198 594 G 0 3 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236814 237599 253 + . gene_id 21 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236814 237599 . + . KQ414889.1 exonerate:protein2genome:local exon 236814 237599 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236814 237599 253 + . alignment_id 21 ; Query gi|805766356|ref|XP_012135238.1| ; Align 236814 5 99 ; Align 236913 40 594 ; Align 237510 238 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 241 Query range: 292 -> 390 Target range: 280067 -> 280435 293 : LeuLeuSerTyrTyrValLeuValGluTrpSerThrAsnAspArgIleSerSerAlaT : 312 :!!! !|||! ! |||!!! !||||||..! !|||||| !|||.!!!!! !| MetTyrSerLeuSerValPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheT 280068 : ATGTACTCGTTGTCAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCA : 280125 313 : hrTyrAlaValLeuPheValSerPheThrPheAsnIlePheIleTyrCysTyrIleGl : 331 ||||| !:!!!!!.!!:!!|||!!.|||||||||:!!|||||| !||||||||||| hrTyrLeuMetPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGl 280126 : CGTATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGG : 280182 332 : yGluLeuValAlaGluGly >>>> Target Intron 1 >>>> CysArgGlnI : 341 ||||:!!:!!:!!||| 74 bp ||| !:!!: yGluIleLeuSerGluGln++ ++CysLeuLysV 280183 : TGAAATTCTCTCCGAACaggt.........................agTGCTTAAAAG : 280286 342 : leAlaGluIleSerTyrMetIleAspTrpTyrArgLeuLeuGlyLysArgLysLeuSe : 360 !!!.!! ! !!!!||||||||||||||||||||||||! !||||||!:! !! !.! alGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGl 280287 : TCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGG : 280343 361 : rIleIleLeuIleMetGlnMetSerHisSerThrIleLysLeuThrAlaGlyAsnIle : 379 !:!:|||||||||.!. :!!|||:!!|||:!!||||||||||||||||||!!.||| yLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIle 280344 : TTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATC : 280400 380 : ValIleLeuSerTyrSerLysPheGlyAspVal : 390 :!! !||||||! |||!..||| !!..!||| IleAspLeuSerLeuSerSerPheCysSerVal 280401 : ATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTG : 280435 vulgar: gi|805766356|ref|XP_012135238.1| 292 390 . KQ414889.1 280067 280435 + 241 M 45 135 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280068 280435 241 + . gene_id 22 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280068 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280068 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280435 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280435 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280068 280435 241 + . alignment_id 22 ; Query gi|805766356|ref|XP_012135238.1| ; Align 280068 293 135 ; Align 280277 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 227 Query range: 300 -> 405 Target range: 277371 -> 277842 301 : GluTrpSerThrAsnAspArgIleSerSerAlaThrTyrAlaValLeuPheValSerP : 320 ||||||||| !!:!||| ! !!!! !.!!|||:!! !:!!:!!.!!:!!|||. GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 321 : heThrPheAsnIlePheIleTyrCysTyrIleGlyGluLeuValAlaGluGly >>> : 338 !. |||||||||||| ! |||||||||||||||:!!:!!.!!||| ! etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 339 : > Target Intron 1 >>>> CysArgGlnIleAlaGluIleSerTyrMetIleA : 349 72 bp |||!:!:!!:!!!.!|||:!: !||||||! : ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 350 : spTrpTyrArgLeuLeuGlyLysArgLysLeuSerIleIleLeuIleMetGlnMetSe : 368 !!|||||| !|||! !! !||| !! |||!:!:!::!!||||||!!:..!! || snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 369 : rHisSerThrIleLysLeuThrAlaGlyAsnIleValIleLeuSerTyrSerLysPhe : 387 | ! ...||||||:::|||||||||...:::::: :::||| ! !! !||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 388 : GlyAsp >>>> Target Intron 2 >>>> ValValLysSerAlaPheAlaPh : 397 |||||| 84 bp |||:!!|||!!!.!!||||||:: GlyAsp++ ++ValIleLysThrThrPheAlaTy 277703 : GGCGATgt.........................agGTAATAAAAACCACTTTCgcgta : 277816 398 : eLeuAsnValLeuArgThrValThr : 405 :||||||:::|||||| !..!||| rLeuAsnIleLeuArgGlnThrThr 277817 : tttaaatattctacgCCAAACGACG : 277842 vulgar: gi|805766356|ref|XP_012135238.1| 300 405 . KQ414889.1 277371 277842 + 227 M 37 111 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277842 227 + . gene_id 23 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277842 227 + . alignment_id 23 ; Query gi|805766356|ref|XP_012135238.1| ; Align 277372 301 111 ; Align 277555 338 156 ; Align 277795 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 224 Query range: 174 -> 270 Target range: 202682 -> 203164 175 : IlePheLeuProPheProSerSerMetArgIleThrAspTyrArgGlnSerProValA : 194 :!! !:!! !!||| !!! !||| !|||! !||| !||| ! |||||||||| LeuSerValThrPheSerPheSerGlyPheIleIleAspValArgTyrSerProValA 202683 : CTTAGTGTGACGTTCTCCTTCTCAGGATTTATCATTGATGTTAGATACAGTCCTGTGA : 202740 195 : snGluIlePheTyrPheLeuGlnCysLeuAlaGlyValValLeuHisIleIleThrVa : 213 |||||||||||!:!! :!!!:! !:!!|||! !:!!:!!:!!||| !:!!||||| snGluIlePhePheSerIleArgIleValAlaValIleLeuIleHisGlyValThrVa 202741 : ACGAGATCTTCTTCTCGATTCGAATCGTAGCTGTCATCCTAATTCACGGTGTCACTGT : 202797 214 : lGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGlyGlnMetGlnIle : 232 ||||||||||!!!|||.!!||| !||||||||||||! !||||||||||||.!.:!! lGlyAlaCysCysLeuThrAlaLeuPheAlaValHisAspCysGlyGlnMetAspVal 202798 : AGGAGCTTGTTGCTTGACAGCGTTGTTTGCGGTTCACGATTGCGGCCAGATGGACGTT : 202854 233 : LeuMetAsnTrpLeuGlyTyrLeuValAsnGlyArgAlaAspMetSerLys >>>> : 250 |||||| !||||||! !:!!|||:!!:!!||||||:!!|||||||||||| LeuMetAlaTrpLeuGluHisLeuMetAspGlyArgSerAspMetSerLys-+ 202855 : TTGATGGCCTGGCTGGAACATTTGATGGATGGTCGTTCGGATATGAGTAAAat..... : 202910 251 : Target Intron 1 >>>> SerLeuAspGlyArgIleAlaSerIleValGluGln : 261 194 bp !:!:!!:!!||||||!!:!.!!!!||||||...||| +-AsnValAsnGlyArgMetValThrIleValSerGln 202911 : ....................aaAATGTGAATGGCAGAATGGTGACCATCGTGAGCCAA : 203135 262 : HisValArgIleLeuLysPheLeuAsp : 270 |||:!!||||||||||||! !:!!!!: HisIleArgIleLeuLysCysValGlu 203136 : CACATACGGATACTGAAATGTGTGGAA : 203164 vulgar: gi|805766356|ref|XP_012135238.1| 174 270 . KQ414889.1 202682 203164 + 224 M 75 225 5 0 2 I 0 190 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202683 203164 224 + . gene_id 24 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 202683 202907 . + . KQ414889.1 exonerate:protein2genome:local exon 202683 202907 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 202908 202909 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 202908 203101 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 203100 203101 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 203102 203164 . + . KQ414889.1 exonerate:protein2genome:local exon 203102 203164 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202683 203164 224 + . alignment_id 24 ; Query gi|805766356|ref|XP_012135238.1| ; Align 202683 175 225 ; Align 203102 250 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 209 Query range: 300 -> 405 Target range: 272836 -> 273302 301 : GluTrpSerThrAsnAspArgIleSerSerAlaThrTyrAlaValLeuPheValSerP : 320 ||||||!!! !:!!||| ! ||| !.!!|||||| !:!!:!!.!!:!!|||. GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 321 : heThrPheAsnIlePheIleTyrCysTyrIleGlyGluLeuValAlaGluGlyCys{A : 339 !.|||||||||||||||||| |||||||||||||||:!!:!!.!!||| !! {! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArgVal{I 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGGTA{A : 272951 340 : r} >>>> Target Intron 1 >>>> {g}GlnIleAlaGluIleSerTyrMet : 347 } 70 bp {!}:::|||...|||:!! !|||||| l}+- +-{e}LysIleGlyGluValValTyrMet 272952 : T}gc.........................aa{a}aaaattggcGAGGTAGTTTACATG : 273045 348 : IleAspTrpTyrArgLeuLeuGlyLysArgLysLeuSerIleIleLeuIleMetGlnM : 367 ! :!!|||||| !|||! !|||||| !! |||..!:!:|||||||||!!:..!! ThrAsnTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerA 273046 : ACGAACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAA : 273105 368 : etSerHisSerThrIleLysLeuThrAlaGlyAsnIleValIleLeuSerTyrSerLy : 386 !!! ! !..!||||||:!!|||||||||!..|||||| !:!!||| ! !! rgCysSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrTh 273106 : GATGCAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACAC : 273162 387 : sPheGlyAsp >>>> Target Intron 2 >>>> ValValLysSerAlaPheA : 396 !||||||||| 81 bp |||:!!||||||||||||| rPheGlyAsp++ ++ValMetLysSerAlaPheA 273163 : GTTCGGCGATgt.........................aggtGATGAAAAGTGCGTTCG : 273273 397 : laPheLeuAsnValLeuArgThrValThr : 405 ||!:!||||||:!!|||||| !..!||| laTyrLeuAsnMetLeuArgGlnThrThr 273274 : CGTACTTAAATATGCTACGACAAACGACA : 273302 vulgar: gi|805766356|ref|XP_012135238.1| 300 405 . KQ414889.1 272836 273302 + 209 M 38 114 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 50 150 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273302 209 + . gene_id 25 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272952 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272952 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272953 272954 . + . intron_id 1 ; splice_site "gc" KQ414889.1 exonerate:protein2genome:local intron 272953 273022 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273021 273022 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 273023 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273023 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273302 209 + . alignment_id 25 ; Query gi|805766356|ref|XP_012135238.1| ; Align 272837 301 114 ; Align 273024 340 150 ; Align 273255 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 300 -> 404 Target range: 291368 -> 292593 301 : GluTrpSerThrAsnAspArgIleSerSerAlaThrTyrAlaValLeuPheValSerP : 320 ||||||..!!:!!:!||| !|||.!!! ! !||||||!.!..!|||.!!..!|||| GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 321 : heThrPheAsnIlePheIleTyrCysTyrIleGlyGlu<->LeuValAlaGlu >>> : 337 ||||||||||||||.!.|||!:!||||||:!!|||||| |||:!!!.!:!! heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln++ 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAGgt... : 291482 338 : > Target Intron 1 >>>> GlyCysArgGlnIleAlaGluIleSerTyrMetI : 348 913 bp ||| !!!:!!||||||.!. !|||||| ! ++Gly---SerGluIleAlaHisAlaSerTyrAspT 291483 : ......................agGGT---AGTGAAATCGCGCACGCTTCCTACGATA : 292423 349 : leAspTrpTyrArgLeuLeuGlyLysArgLysLeuSerIleIleLeuIleMetGlnMe : 367 !!!:||||||!.!|||! ! !!::!!:! ! !..!|||:!!|||:!::!: !! hrGluTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIl 292424 : CAGAATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCAT : 292480 368 : tSerHisSerThrIleLysLeuThrAlaGlyAsnIleValIleLeuSerTyrSerLys : 386 :!!! ! ! !!||||||||||||||||||!!.||| !!:!!||||||! !:!! eThrLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThr 292481 : AACGAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACT : 292537 387 : PheGlyAspValValLysSerAlaPheAlaPheLeuAsnValLeuArgThrVal : 404 ||||||! !||| !:!!||| !.!.!.!!!.:!!:!! ! !|||! !||| PheGlyAlaValArgGluSerLysLeuValLeuIleHis***GluArgIleVal 292538 : TTTGGCGCTGTACGTGAATCAAAACTAGTCTTGATACACTAAGAACGTATAGTT : 292593 vulgar: gi|805766356|ref|XP_012135238.1| 300 404 . KQ414889.1 291368 292593 + 183 M 32 96 G 0 3 M 4 12 5 0 2 I 0 909 3 0 2 M 1 3 G 1 0 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 292593 183 + . gene_id 26 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292593 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292593 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 291369 292593 183 + . alignment_id 26 ; Query gi|805766356|ref|XP_012135238.1| ; Align 291369 301 96 ; Align 291468 333 12 ; Align 292393 337 3 ; Align 292396 339 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 319 -> 390 Target range: 224445 -> 224658 320 : PheThrPheAsnIlePheIleTyrCysTyrIleGlyGluLeuValAlaGluGlyCysA : 339 ||| ... ::: !||| !|||.!! !..!||| !! ! |||. PheLysIleIleLeuHisHisTyrHisTyrPheLeuSerLeuPhePheProGlnCysG 224446 : tttaaaattattcttcacCACTACCACTATTTTTTATCGCTATTTTTTCCtcagtgtg : 224503 340 : rgGlnIleAlaGluIleSerTyrMetIleAspTrpTyrArgLeuLeuGlyLysArgLy : 358 ..:::|||...::!:!:||||||||||||||||||||||||||| !|||!!.!:!|| luLysIleGlyGlnValSerTyrMetIleAspTrpTyrArgLeuThrGlyAsnLysLy 224504 : aaaaaattggacaAGTGTCGTACATGATCGACTGGTATCGGTTGACTGGAAATAAGAA : 224560 359 : sLeuSerIleIleLeuIleMetGlnMetSerHisSerThrIleLysLeuThrAlaGly : 377 ||||!!! !|||||||||!!: !||||||:!!|||:!!|||||||||||||||||| sLeuCysCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAlaGly 224561 : ACTATGCTGCATTCTGATAATCGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGA : 224617 378 : AsnIleValIleLeuSerTyrSerLysPheGlyAspVal : 390 |||!!:||| !|||!!! !!!! |||||||||||| AsnMetValGluLeuCysLeuThrThrPheGlyAspVal 224618 : AACATGGTCGAACTGTGTCTAACCACTTTCGGTGACGTA : 224658 vulgar: gi|805766356|ref|XP_012135238.1| 319 390 . KQ414889.1 224445 224658 + 178 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224446 224658 178 + . gene_id 27 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224446 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224446 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224446 224658 178 + . alignment_id 27 ; Query gi|805766356|ref|XP_012135238.1| ; Align 224446 320 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 10 -> 116 Target range: 299668 -> 299989 11 : GluTyrLeuLysAsnValAspLeuSerValArgLeuAsnArgTrpIleLeuLysProI : 30 .!.|||! !!!.:!!:!! !!! !!!!:!!!:!:!! !!:!|||:!:|||||||||| HisTyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProI 299669 : CATTACCAAAATGACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTA : 299726 31 : leAlaAlaTrpPro<->GluSerSerThrValSerProIleLysLysTyrLeuGlyTr : 48 ||!.!!.!|||! ! !..!..! ! !||| !:!::!! ! !:!!..! leGlyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuValSerIl 299727 : TCGGAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGAT : 299783 49 : pPheValHisIleIleCysTyrSerLeuLeuSerPheLeuPheValProCysLeuThr : 67 !!:!! ! !||||||!:!||| !|||! !|||:!! !!:!!|||! ! ! ! eValLeuMetThrIleCysPheSerSerLeuPhePheIleValLeuProSerGlyHis 299784 : CGTTCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCAT : 299840 68 : PheLeuIleLeuGluValAsnAspThrTyrAsnArgIleLysLeuIleGlyProLeuS : 87 !:!:!!.!!!!!! !! !!!...!! !:!! !!:!:!:|||:!!.!!||||||:!!. TyrIlePhePheAlaGluLysSerIleHisValLysValLysValPheGlyProValG 299841 : TACATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTG : 299900 88 : erPhePheLeuMetSerTyrLeuLysTyrTyrLeuMetLeuLeuHisLysAsnAspIl : 106 !!|||! !||| ||| !:!!||||||! !! !:!:! !|||:!! ..!! .! lyPheCysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPh 299901 : GTTTTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTT : 299957 107 : eLeuLysCysValGlnGlnValGlnArgAsp : 116 ! !::!|||:!!|||!!.|||:!!|||||| eGluArgCysIleGlnHisValGluArgAsp 299958 : CGAACGATGCATCCAACACGTCGAGAGAGAC : 299989 vulgar: gi|805766356|ref|XP_012135238.1| 10 116 . KQ414889.1 299668 299989 + 135 M 24 72 G 0 3 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299669 299989 135 + . gene_id 28 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299669 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299669 299989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299669 299989 135 + . alignment_id 28 ; Query gi|805766356|ref|XP_012135238.1| ; Align 299669 11 72 ; Align 299744 35 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 17 -> 117 Target range: 200538 -> 200842 18 : LeuSerValArgLeuAsnArgTrpIleLeuLysProIleAlaAlaTrpProGluSerS : 37 :!!!!!:!!!:!! !|||||||||||||||||| !!!!:||| !||| !!!:!.!| ValCysIleGlnTrpAsnArgTrpIleLeuLysSerMetAlaLeuTrpPheAspLysS 200539 : GTTTGCATACAGTGGAATCGTTGGATCTTGAAATCAATGGCTTTGTGGTTTGACAAAT : 200596 38 : erThrValSerProIleLysLysTyrLeu-GlyTrpPheValHisIleIleCysTyrS : 56 ||!.!:!!||||||:!!:!!|||!! |||# ! !!.!.:!! ! !:!!|||!! . erAsnIleSerProValGluLys***Leu#ThrArgLeuIleSerAlaValCys***G 200597 : CCAACATTTCACCGGTCGAGAAATAACTACACTCGGCTAATCAGTGCCGTTTGTTAAG : 200654 57 : erLeuLeuSerPheLeuPheValProCysLeuThrPheLeuIleLeuGluValAsnAs : 75 !!|||:!!...:::......::: ||| ! ! !:!!.!!|||!!:|||.!.:! lyLeuMetGlyTyrPheLeuIleLeuCysSerLeuHisValPheLeuAspValGluAs 200655 : GATTGATGggttactttttaatattatgcAGTTTACACGTGTTTCTTGACGTAGAAAA : 200711 76 : pThrTyrAsnArgIleLysLeuIleGlyProLeuSerPhePhe<->LeuMetSerTyr : 93 !! ! !!!.!:!|||||||||.!!! !|||||| !.!..!! ||| !!! ! nIleLeuLysLysIleLysLeuPheValProLeuValLeuLeuCysLeuAlaThrIle 200712 : TATACTTAAAAAGATTAAATTGTTTGTTCCCCTAGTACTACTTTGCTTGGCTACGATT : 200768 94 : LeuLysTyrTyrLeuMetLeuLeuHisLysAsnAspIleLeuLysCysValGlnGlnV : 113 ||||||! !:!!||| !:!!|||||| ! :!!|||! !! !! !|||! !:!!!!.: LeuLysCysHisLeuSerValLeuHisAspAspAspThrTyrThrCysGlyGluHisI 200769 : TTGAAGTGTCATTTGTCGGTACTTCATGATGACGATACTTACACGTGTGGCGAGCATA : 200828 114 : alGlnArgAspTrp : 117 !!:!! !!!!:||| leLysTrpGluTrp 200829 : TAAAATGGGAGTGG : 200842 vulgar: gi|805766356|ref|XP_012135238.1| 17 117 . KQ414889.1 200538 200842 + 132 M 29 87 F 0 1 M 43 129 G 0 3 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 200539 200842 132 + . gene_id 29 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 200539 200842 . + . KQ414889.1 exonerate:protein2genome:local exon 200539 200842 . + . insertions 3 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local similarity 200539 200842 132 + . alignment_id 29 ; Query gi|805766356|ref|XP_012135238.1| ; Align 200539 18 87 ; Align 200627 47 129 ; Align 200759 90 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 300 -> 346 Target range: 224323 -> 224461 301 : GluTrpSerThrAsnAspArgIleSerSerAlaThrTyrAlaValLeuPheValSerP : 320 |||||||||:::::: !! !! !|||:!!!.!|||||| !:!!|||.!!:!!|||. GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 321 : heThrPheAsnIlePheIleTyrCysTyrIleGlyGluLeuValAlaGluGlyCysAr : 339 ..||||||||||||||||||:::||||||||||||||||||||||||||| :: euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlnValLy 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggtgaa : 224438 340 : gGlnIleAlaGluIleSerTyr : 346 :...... :::::: ::: sAsnPheLeuLysLeuPhePhe 224439 : aaattttttaaaattattcttc : 224461 vulgar: gi|805766356|ref|XP_012135238.1| 300 346 . KQ414889.1 224323 224461 + 129 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224461 129 + . gene_id 30 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224324 224461 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224461 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224461 129 + . alignment_id 30 ; Query gi|805766356|ref|XP_012135238.1| ; Align 224324 301 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 337 -> 396 Target range: 238628 -> 238805 338 : CysArgGlnIleAlaGluIleSerTyrMetIleAspTrpTyrArgLeuLeuGlyLysA : 357 ||| !:!!:!!!.!|||:!: !||||||! !||||||||| !|||! ! !!:!| CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgA 238629 : TGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAA : 238686 358 : rgLysLeuSerIleIleLeuIleMetGlnMetSerHisSerThrIleLysLeuThrAl : 376 ||! |||..!:!!|||||||||!!::!! |||:!! !..!:!!|||:!!||||| rgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValThrAl 238687 : GAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCACCGC : 238743 377 : aGlyAsnIleValIleLeuSerTyrSerLysPheGlyAspValValLysSerAlaPhe : 395 ||||!!.:!!:!! !:!!||| !! !! !|||||||||||| !:!!!!! !.!! aGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeu 238744 : TGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTT : 238800 396 : Ala : 396 ||| Ala 238801 : GCT : 238805 vulgar: gi|805766356|ref|XP_012135238.1| 337 396 . KQ414889.1 238628 238805 + 126 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238629 238805 126 + . gene_id 31 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238629 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238629 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238629 238805 126 + . alignment_id 31 ; Query gi|805766356|ref|XP_012135238.1| ; Align 238629 338 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 334 -> 390 Target range: 234979 -> 235147 335 : AlaGluGlyCysArgGlnIleAlaGluIleSerTyrMetIleAspTrpTyrArgLeuL : 354 .!!:!! !|||! !:!!:!!!.!|||! ! !||||||! !!!:||||||||||||! ThrGlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuP 234980 : ACTCAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTAC : 235037 355 : euGlyLysArgLysLeuSerIleIleLeuIleMetGlnMetSerHisSerThrIleLy : 373 ! !|||! ! |||.!!:!::!!:!!|||!!:...! !||| !! !..!||||| roHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLy 235038 : CTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAA : 235094 374 : sLeuThrAlaGlyAsnIleValIleLeuSerTyrSerLysPheGlyAspVal : 390 |:!!|||||||||!!..!!:!! !:!!||| !:!!! !|||||||||||| sIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235095 : AATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: gi|805766356|ref|XP_012135238.1| 334 390 . KQ414889.1 234979 235147 + 118 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234980 235147 118 + . gene_id 32 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234980 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234980 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234980 235147 118 + . alignment_id 32 ; Query gi|805766356|ref|XP_012135238.1| ; Align 234980 335 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 263 -> 300 Target range: 224128 -> 224239 264 : ArgIleLeuLysPheLeuAspLeuThrGluLysThrLeuArgTyrIleAlaLeuValG : 283 !:! !! !!:!|||||| ! !|||||||||.!!|||!:! ! :!!:!!!!!|||| LysCysCysArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValG 224129 : AAATGTTGCAGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGG : 224186 284 : luPheLeuGlyCysThrThrValLeuCysLeuLeuSerTyrTyrValLeuVal : 300 ||||||||||||||! ! ! !:!!|||||||||.!!|||||||||:!!||| luPheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleVal 224187 : AATTTCTAGGCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTG : 224239 vulgar: gi|805766356|ref|XP_012135238.1| 263 300 . KQ414889.1 224128 224239 + 103 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224129 224239 103 + . gene_id 33 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224129 224239 . + . KQ414889.1 exonerate:protein2genome:local exon 224129 224239 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224129 224239 103 + . alignment_id 33 ; Query gi|805766356|ref|XP_012135238.1| ; Align 224129 264 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1006 Query range: 2 -> 365 Target range: 259724 -> 262015 3 : SerSerLysProIleValValHisThrGluLeuGluIleLeuGlyAspTyrSerLeuG : 22 !!!!:!||| !!:!: !!|||.!.|||...!!! ! !! !.!!||||||||||||| ThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerLeuG 259725 : ACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCC : 259782 23 : lnLeuAsnArgTrpMetLeuLysAlaIleGlyAlaTrpProLysSerHisSer<->Th : 40 ||!!!|||||||||.!.|||||| !!||||||||||||||| ||| !||| || lnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerThrTh 259783 : AATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCACGAC : 259839 41 : rLysPheGluLysIleValSerIleLeuLeuIleIleThrCysTyrPhePheValLeu : 59 |!:!.!!|||||||||:!!|||:!!:!!||||||.!!! !|||||| ! !:!!||| rArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIleLeu 259840 : CAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATACTG : 259896 60 : IleThrValLeuProCysIleLeuHisLeuIlePheGluAspAspAspLeuArgThrL : 79 :!!|||:!!:!!||||||:!!||||||:!!:!!.!!||| ! !!:..!||| !! !| ValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrMetL 259897 : GTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGA : 259956 80 : ysValIleIleLeuGlyProLeuSerHisTrpPheLeuGlyGlyValGlyTyrThrTh : 98 ||..!! :!:||||||||||||!!!|||||||||:!!||| !!:!!..!|||||||| ysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrThrTh 259957 : AAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACACAAC : 260013 99 : rLeuLeuValHisAsnLysGluIleLysTrpCysValAspGlnValLysSerAspTrp : 117 |||||||:!!.....!!:!!!:||| ! ||||||!!:!!.|||:!!!:!|||||| rLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAspTrp 260014 : GTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGATTGG : 260070 118 : ArgAsnAlaThrArgProGluValGlnGlnLeuMetLeuLysAspAlaLysPheGlyA : 137 |||! ! !|||||| !:!!! !|||.!.:!!||||||!:! !!||||||||||||| ArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheGlyA 260071 : AGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCGGCA : 260130 138 : rgTyrValValAlaPheCysAlaThrLeuThrGluPheSerThrAlaCysPheThrLe : 156 ||||||||!.!|||! !||||||.!!!!!..!:!! !.!!..! !|||||| !|| rgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCysLe 260131 : GATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTT : 260187 157 : uValArgAlaLeuThrThrGluValIleValValGlyAsnGluThrArgIleMetArg : 175 ||||! !!.!|||!:!|||||||||||| !|||||||||||||||||||||:!:!.! uValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleValHis 260188 : GGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCAT : 260244 176 : MetLeuProCysValProTyrArgGluLeuValProValHisThrSerProThrTyrG : 195 :!!|||||||||!.! !|||!:!||||||:!! !|||:!! !||||||! ! !!| LeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetAsnG 260245 : CTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGAACG : 260304 196 : luLeuMetLeuIleAlaGlnPheValSerGlyPheValIleSerCysAlaPheValGl : 214 ||:!!:!:|||:!!!.!||||||||||||||||||:!!:!:!:!! ::! !||||| luIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrValGl 260305 : AGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGG : 260361 215 : yAlaPheSerLeuAlaThrValPheThrIleHisAlaHisSerGlnLeuAsnValLeu : 233 | !||||||||||||.!!|||.!.||| !|||||| !.!!||||||||||||||| yIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeu 260362 : AATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTC : 260418 234 : MetMetSerIleThrGluLeuValAspGluSerArg<-><-><->GluLysSerPheG : 250 ||| !!!|||||||||!!!||||||||||||||| :!!|||:!! ! MetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaProP 260419 : ATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTCCTT : 260478 251 : luArgAspIleGlyAlaValValArgLysHisLeuSerIlePhe{Se} >>>> Tar : 265 !:!!!:||||||!.!:!!|||..! ! ||||||!!! !.!!{!!} heLysGluIleGlyValIleValGluHisHisLeuArgAlaLeu{Th}++ 260479 : TCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC{AC}gt........ : 260527 266 : get Intron 1 >>>> {r}PheIleSerHisIleGluAlaIleMetAsnGluIle : 277 257 bp {!}|||||||||!.!||||||! !:!:||||||..!||| ++{r}PheIleSerArgIleGluAspValMetAsnArgIle 260528 : .................ag{C}TTCATATCGCGTATCGAGGATGTGATGAACCGGATA : 260816 278 : CysPheMetGluLeuPheLysCysThrPheSerIleCysLeuLeuGlyTyrTyrIleL : 297 ||||||:!!|||||||||!:!||||||.!...!||||||||||||||||||||||||| CysPheLeuGluLeuPheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrIleL 260817 : TGCTTCCTGGAGTTGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATATTC : 260876 298 : euMet >>>> Target Intron 2 >>>> GluTrpAlaGlnGlnAspPheArg : 306 ||||| 852 bp |||||||||:!!||||||.!.!:! euMet++ ++GluTrpAlaGluGlnAspIleGln 260877 : TTATGgt.........................agGAATGGGCTGAGCAAGATATACAA : 261755 307 : ThrMetThrGlyTyrIleSerValPheSerSerMetThrPheAsnIlePheMetLeuC : 326 !.!:!!:!! !|||.!!! !:!!.!.! !:!!!!: !||||||:!!|||!!::!!| AsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheIleIleC 261756 : AATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCT : 261815 327 : ysPheIleGlyGluThrIleLysGluGln >>>> Target Intron 3 >>>> : 336 ||!:!|||||||||! !:!!! !|||||| 81 bp ysTyrIleGlyGluIleLeuThrGluGln++ ++ 261816 : GTTACATCGGTGAAATACTAACGGAACAGgt.........................ag : 261924 337 : CysAsnLysValGlyGluAlaValTyrMetSerAsnTrpTyrTyrLeuArgGluLysA : 355 |||:::|||||||||!!:!.!|||||||||!!!|||||||||||||||! !!!:|||. CysSerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuProAspLysS 261925 : TGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACCTGATAAAA : 261983 356 : spValLeuAspLeuMetLeuIleIleSerArg : 365 .!:!!|||||||||!!:|||||||||:!!||| erIleLeuAspLeuIleLeuIleIleAlaArg 261984 : GTATCCTTGATTTGATTTTGATCATTGCACGA : 262015 vulgar: gi|805766381|ref|XP_012135246.1| 2 365 . KQ414889.1 259724 262015 + 1006 M 37 111 G 0 3 M 206 618 G 0 9 M 19 57 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259725 262015 1006 + . gene_id 1 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259725 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259725 260524 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262015 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262015 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259725 262015 1006 + . alignment_id 1 ; Query gi|805766381|ref|XP_012135246.1| ; Align 259725 3 111 ; Align 259839 40 618 ; Align 260466 246 57 ; Align 260783 266 99 ; Align 261734 299 111 ; Align 261926 336 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 828 Query range: 0 -> 297 Target range: 274329 -> 275306 1 : MetAlaSerSerLysProIleValValHisThrGluLeuGluIleLeuGlyAspTyrS : 20 |||.!!!:!!:! !!||| !||| !.!!.!.!!!!!:! !|||.!!||||||| MetThrAsnAsnCysAlaIleAsnValThrAlaAsnPheAspSerLeuSerAspTyrS 274330 : ATGACAAACAACTGTGCGATAAACGTAACTGCGAATTTCGACAGTCTCAGCGACTACA : 274387 21 : erLeuGlnLeuAsnArgTrpMetLeuLysAlaIleGlyAlaTrpPro<->LysSerHi : 38 ||||||||||||||||||||.!.|||||| !!||||||||||||||| |||! erLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaSerPr 274388 : GCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCC : 274444 39 : sSerThrLysPheGluLysIleValSerIleLeuLeuIleIleThrCysTyrPhePhe : 57 !!!!||||||||||||::!|||:!!||| !|||||||||... ||||||! !||| oThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCysPhe 274445 : CACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTGCTTC : 274501 58 : ValLeuIleThrValLeuProCysIleLeuHisLeuIlePheGluAspAspAspLeuA : 77 :!!||| !||||||:!!||| !!|||!!!|||:!!|||.!.! !|||!!:..!|||! IleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGluSerLeuH 274502 : ATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGTCTCC : 274561 78 : rgThrLysValIleIleLeuGlyProLeuSerHisTrpPheLeuGlyGlyValGlyTy : 96 .! !|||:!!! :!:||||||||||||.!!|||||||||:!!||||||:!!..!|| isLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTy 274562 : ATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTA : 274618 97 : rThrThrLeuLeuValHisAsnLysGluIleLysTrpCysValAspGlnValLysSer : 115 |||||||||||||:!!!.!!:!|||||||||::: ! ||||||!!:!!.:!!:!!!!! rThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThr 274619 : CACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACA : 274675 116 : AspTrpArgAsnAlaThrArgProGluValGlnGlnLeuMetLeuLysAspAlaLysP : 135 |||||||||! !!.!||||||||||||! !||||||:!!|||||||||:!!||||||. AspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsnAlaLysI 274676 : GATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGA : 274735 136 : heGlyArgTyrValValAlaPheCysAlaThrLeuThrGluPheSerThrAlaCysPh : 154 !!||||||||||||!.! !|||||||||.!!!!!! !:!!! !.!!..! !|||!: leGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuCysTy 274736 : TCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTA : 274792 155 : eThrLeuValArgAlaLeuThrThrGluValIleValValGlyAsnGluThrArgIle : 173 ! !:!!:!!! !|||!!!|||! !:!!..!:!! !||||||||||||||||||! ! rCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrArgThr 274793 : TTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACC : 274849 174 : MetArgMetLeuProCysValProTyrArgGluLeuValProValHisThrSerProT : 193 :!!!.!|||||||||||| ! !!|||!:!:!!:!!||| !!||| !!|||||||||| ValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThrSerProT 274850 : GTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGA : 274909 194 : hrTyrGluLeuMetLeuIleAlaGlnPheValSerGlyPheValIleSerCysAlaPh : 212 || !!|||:!!:!:||| !:!!||||||||||||||||||:!!:!:!:!! ::! hrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerSerAl 274910 : CGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGC : 274966 213 : eValGlyAlaPheSerLeuAlaThrValPheThrIleHisAlaHisSerGlnLeuAsn : 231 |||||||||||||||||||||.!!||||||.!! !||||||:!!.!!||||||!:! aValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSer 274967 : GGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGC : 275023 232 : ValLeuMetMetSerIleThrGluLeuValAspGluSerArgGluLysSer<-><->< : 249 |||||||||!!:!!!|||||||||!!!|||:!!.!.||||||!!::::::: ValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsnLysAsnV 275024 : GTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaaaatg : 275083 250 : ->PheGluArgAspIleGlyAlaValValArgLysHisLeuSerIlePhe{Se} >> : 265 ::: !!!:||||||!.!||||||..! ! ||||||!!!:!!.!!{||} alTyrPheSerGluIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 275084 : tttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTC{AG}gt.. : 275138 266 : >> Target Intron 1 >>>> {r}PheIleSerHisIleGluAlaIleMetAsn : 275 74 bp {|}||||||:!!!.!||||||! !:!:|||||| ++{r}PheIleAlaArgIleGluAspValMetAsn 275139 : .......................ag{T}TTCATAGCACGTATCGAGGATGTGATGAAT : 275238 276 : GluIleCysPheMetGluLeuPheLysCysThrPheSerIleCysLeuLeuGlyTyrT : 295 ..!||||||||||||||||||||||||||||||.!...!!!:|||:!!|||||||||| ArgIleCysPheMetGluLeuPheLysCysThrLeuAspMetCysMetLeuGlyTyrT 275239 : CGAATATGCTTCATGGAATTGTTCAAGTGTACTCTGGATATGTGCATGCTTGGCTATT : 275298 296 : yrIleLeu : 297 |||||||| yrIleLeu 275299 : ACATTCTC : 275306 vulgar: gi|805766381|ref|XP_012135246.1| 0 297 . KQ414889.1 274329 275306 + 828 M 35 105 G 0 3 M 213 639 G 0 9 M 16 48 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274330 275306 828 + . gene_id 2 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274330 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274330 275135 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274330 275306 828 + . alignment_id 2 ; Query gi|805766381|ref|XP_012135246.1| ; Align 274330 1 105 ; Align 274438 36 639 ; Align 275086 249 48 ; Align 275211 266 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 821 Query range: 2 -> 297 Target range: 266589 -> 267555 3 : SerSerLysProIleValValHisThrGluLeuGluIleLeuGlyAspTyrSerLeuG : 22 :!!!:!:!! !!:!:|||:!!.!..!!.!.|||.!.! !|||.!!||||||||||||| AlaAsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerLeuG 266590 : GCTAACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCCTGC : 266647 23 : lnLeuAsnArgTrpMetLeuLysAlaIleGlyAlaTrpProLys<->SerHisSerTh : 40 ||||||||||||||.!.|||||| !!||||||||||||||| ! |||! !!!!:! lnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuThrSe 266648 : AATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCACATC : 266704 41 : rLysPheGluLysIleValSerIleLeuLeuIleIleThrCysTyrPhePheValLeu : 59 !|||.!!|||::!||||||||| ! !||||||:!!! !||||||! !! !:!!||| rLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIleLeu 266705 : TAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATACTG : 266761 60 : IleThrValLeuProCysIleLeuHisLeuIlePheGluAspAspAspLeuArgThrL : 79 .!!||||||:!!||||||:!:!!!||||||:!!.!.||||||!!:..!:!!||||||| PheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgThrL 266762 : TTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTACGA : 266821 80 : ysValIleIleLeuGlyProLeuSerHisTrpPheLeuGlyGlyValGlyTyrThrTh : 98 |||||! :!:!!!|||||||||||||||||||||:!!||||||:!!..!|||||||| ysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrThrTh 266822 : AAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACACCAC : 266878 99 : rLeuLeuValHisAsnLysGluIleLysTrpCysValAspGlnValLysSerAspTrp : 117 |||||||:!!!.!!:!|||||||||::: ! ||||||!!:!!.:!!:!!!!!|||||| rLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrp 266879 : ACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGATTGG : 266935 118 : ArgAsnAlaThrArgProGluValGlnGlnLeuMetLeuLysAspAlaLysPheGlyA : 137 |||! !!.!||||||||||||! !:!!|||:!!|||||||||:!!|||!:!.!!|||| ArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleGlyA 266936 : AGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCGGTC : 266995 138 : rgTyrValValAlaPheCysAlaThrLeuThrGluPheSerThrAlaCysPheThrLe : 156 |||||:!!!.! !|||||||||.!!!!!! !:!!! !.!!..! ! !!!:! !:! rgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCysVa 266996 : GTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGT : 267052 157 : uValArgAlaLeuThrThrGluValIleValValGlyAsnGluThrArgIleMetArg : 175 !:!!! !|||!!!|||! !:!!..!:!:! !|||||||||||||||||||||:!:!.! lIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleValHis 267053 : GATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTACAT : 267109 176 : MetLeuProCysValProTyrArgGluLeuValProValHisThrSerProThrTyrG : 195 :!!|||||||||!.! !|||!:!:!!:!!:!! !!||| !!|||||||||||| !!| LeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrAsnG 267110 : CTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGAACG : 267169 196 : luLeuMetLeuIleAlaGlnPheValSerGlyPheValIleSerCysAlaPheValGl : 214 ||:!!:!:|||:!!:!!||||||||||||||||||:!!:!:!:!! ::! !!||||| luIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValValGl 267170 : AGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCGG : 267226 215 : yAlaPheSerLeuAlaThrValPheThrIleHisAlaHisSerGlnLeuAsnValLeu : 233 ||||||||||||||||.!!||||||.!! !|||||| !.!!||||||!:!|||||| yAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerValLeu 267227 : TGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTG : 267283 234 : MetMetSerIleThrGluLeuValAspGluSerArgGluLysSerPheGlu<-><->< : 251 ||||||!!!|||! !|||!!!|||:!!..!||||||!!:!..!:! .!. MetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValCysP 267284 : ATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTTGCT : 267343 252 : ->ArgAspIleGlyAlaValValArgLysHisLeuSerIlePhe{Se} >>>> Tar : 265 ! ! ||||||!.!||||||..! ! ||||||!!!:!!!!.{||} heAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 267344 : TCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG}gt........ : 267392 266 : get Intron 1 >>>> {r}PheIleSerHisIleGluAlaIleMetAsnGluIle : 277 69 bp {|}||||||:!!!.!||||||::!:!!|||!:!|||||| ++{r}PheIleAlaArgIleGluSerValMetSerGluIle 267393 : .................ag{C}TTCATAGCACGTATCGAAAGTGTAATGAGCGAAATT : 267493 278 : CysPheMetGluLeuPheLysCysThrPheSerIleCysLeuLeuGlyTyrTyrIleL : 297 |||||||||||||||||||||||||||.!...!||||||:!!|||.!!|||||||||| CysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSerTyrTyrIleL 267494 : TGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCTATTATATCC : 267553 298 : eu : 297 || eu 267554 : TT : 267555 vulgar: gi|805766381|ref|XP_012135246.1| 2 297 . KQ414889.1 266589 267555 + 821 M 34 102 G 0 3 M 214 642 G 0 9 M 14 42 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266590 267555 821 + . gene_id 3 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266590 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266590 267389 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267555 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266590 267555 821 + . alignment_id 3 ; Query gi|805766381|ref|XP_012135246.1| ; Align 266590 3 102 ; Align 266695 37 642 ; Align 267346 251 42 ; Align 267460 266 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 725 Query range: 7 -> 297 Target range: 256619 -> 257577 8 : ValValHisThrGluLeuGluIleLeuGlyAspTyrSerLeuGlnLeuAsnArgTrpM : 27 |||||| ! |||.!.!!!:!!! !! !.!!|||||||||||||||||||||||||||. ValValLysThrAsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpP 256620 : GTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGT : 256677 28 : etLeuLysAlaIleGlyAlaTrpProLysSerHisSer<->ThrLysPheGluLysIl : 45 !.|||||| !!||||||||||||||| ||| ||| |||! .!!|||::!! heLeuLysProIleGlyAlaTrpProProSerSerSerThrThrThrLeuGluArgAs 256678 : TCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCGAAA : 256734 46 : eValSerIleLeuLeuIleIleThrCysTyrPhePheValLeuIleThrValLeuPro : 64 !|||||||||:!!|||! !|||..!|||||| !! !:!!|||.!!|||:!!:!!||| nValSerIleValLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIlePro 256735 : CGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCC : 256791 65 : CysIleLeuHisLeuIlePheGluAspAspAspLeuArgThrLysValIleIleLeuG : 84 |||:!:||||||:!!.!!.!!!!:||||||..!!!! |||||| ...| CysLeuLeuHisValPheLeuAspAspAspSerPheTyrMetLysValLysAsnPheG 256792 : TGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcg : 256851 85 : lyProLeuSerHisTrpPheLeuGlyGlyValGlyTyrThrThrLeuLeuValHisAs : 103 |||||:!!|||||||||.!!:!!.!! !!!.!..!|||||| !||||||:!!!!... lyProMetSerHisTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGl 256852 : gtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGG : 256908 104 : nLysGluIleLysTrpCysValAspGlnValLysSerAspTrpArgAsnAlaThrArg : 122 .|||!!:|||:::!::||||||!!:!!.:!!:!!!!!|||||||||! !.!! !||| yLysAspIleArgTyrCysValGluHisIleGluThrAspTrpArgMetValArgArg 256909 : AAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGG : 256965 123 : ProGluValGlnGlnLeuMetLeuLysAspAlaLysPheGlyArgTyrValValAlaP : 142 !:!!! !||||||:!!|||:!!|||:!!|||!:!|||||||||||||||!.!.!!| GluLysAspGlnGlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrP 256966 : GAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACAT : 257025 143 : heCysAlaThrLeuThrGluPheSerThrAlaCysPheThrLeuValArgAlaLeuTh : 161 ||||||||.!!:!!! !:!! !.!!... |||||| ::! ! !||||||!. heCysAlaAlaIleMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAs 257026 : TTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAA : 257082 162 : rThrGluValIleValValGlyAsnGluThrArgIleMetArgMetLeuProCysVal : 180 !||||||:!!||| !|||||||||||||||! !|||:!!|||:!!|||||| !..! nThrGluIleIleHisValGlyAsnGluThrThrIleValArgValLeuProValThr 257083 : CACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACC : 257139 181 : ProTyrArgGluLeuValProValHisThrSerProThrTyrGluLeuMetLeuIleA : 200 !|||!:!:!!|||:!! !||| !! !||||||||| !!|||:!!:!!:!!.!! ValTyrLysLysLeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheM 257140 : GTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTA : 257199 201 : laGlnPheValSerGlyPheValIleSerCysAlaPheValGlyAlaPheSerLeuAl : 219 !||| ! !|||..!.!!:!! !!! !::! |||.!! !||||||||||| etGlnThrTrpSerSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAl 257200 : TGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGC : 257256 220 : aThrValPheThrIleHisAlaHisSerGlnLeuAsnValLeuMetMetSerIleThr : 238 |.!!||||||.!!! !||||||:!!.!!||||||!.!||||||||| !!!!|||||| aAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThr 257257 : GGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACA : 257313 239 : GluLeuValAspGluSer<-><->ArgGluLysSerPheGlu<->ArgAspIleGlyA : 255 |||!!!|||:!!|||||| |||||||||:::||| !:!.!.||||||! GluPheValAsnGluSerArgAsnArgGluLysThrPheProPheLysGlnIleGlyV 257314 : GAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCG : 257373 256 : laValValArgLysHisLeuSerIlePhe{Se} >>>> Target Intron 1 >> : 265 .!:!!|||..! ! ||||||!!!:!:.!.{||} 76 bp alIleValGluHisHisLeuArgValLeu{Se}++ 257374 : TGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt....................... : 257407 266 : >> {r}PheIleSerHisIleGluAlaIleMetAsnGluIleCysPheMetGluLeu : 282 {|}|||||||||:!!||||||! !:!:||||||..!|||||||||:!:|||||| ++{r}PheIleSerTyrIleGluGluValMetAsnArgIleCysPheLeuGluLeu 257408 : ..ag{T}TTCATATCATATATCGAGGAAGTGATGAACCGAATATGTTTTTTAGAGTTG : 257530 283 : PheLysCysThrPheSerIleCysLeuLeuGlyTyrTyrIleLeu : 297 |||!:!||||||.!.:!!||||||:!!|||||||||||||||||| PheArgCysThrLeuAlaIleCysMetLeuGlyTyrTyrIleLeu 257531 : TTTAGATGCACGCTGGCTATATGCATGCTGGGATACTACATTCTT : 257577 vulgar: gi|805766381|ref|XP_012135246.1| 7 297 . KQ414889.1 256619 257577 + 725 M 32 96 G 0 3 M 205 615 G 0 6 M 6 18 G 0 3 M 14 42 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256620 257577 725 + . gene_id 4 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256620 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256620 257404 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257577 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257577 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256620 257577 725 + . alignment_id 4 ; Query gi|805766381|ref|XP_012135246.1| ; Align 256620 8 96 ; Align 256719 40 615 ; Align 257340 245 18 ; Align 257361 251 42 ; Align 257482 266 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 645 Query range: 15 -> 248 Target range: 262840 -> 263542 16 : LeuGlyAspTyrSerLeuGlnLeuAsnArgTrpMetLeuLysAlaIleGlyAlaTrpP : 35 |||.!!|||||||||||||||:!!|||||||||:!!|||||| !!||||||||||||| LeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpP 262841 : CTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGC : 262898 36 : roLysSerHisSer<->ThrLysPheGluLysIleValSerIleLeuLeuIleIleTh : 53 || !||| !||| :!!!:!.!.|||::!|||:!!!!!.!!|||||||||:!!.. roLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValVa 262899 : CACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGT : 262955 54 : rCysTyrPhePheValLeuIleThrValLeuProCysIleLeuHisLeuIlePheGlu : 72 !||||||! !.!!:!!||| !||||||:!!|||! !|||||||||:!!:!!.!.||| lCysTyrCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGlu 262956 : CTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAA : 263012 73 : AspAspAspLeuArgThrLysValIleIleLeuGlyProLeuSerHisTrpPheLeuG : 92 ! !!!::!!!!!!.!! !|||:!! :!!||||||||||||.!!!!.||||||:!!| AlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValG 263013 : GCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCG : 263072 93 : lyGlyValGlyTyrThrThrLeuLeuValHisAsnLysGluIleLysTrpCysValAs : 111 || !:!!..!|||||| !||||||:!!|||!:!|||!!:|||:!! ! ||||||.! lyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGl 263073 : GTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCA : 263129 112 : pGlnValLysSerAspTrpArgAsnAlaThrArgProGluValGlnGlnLeuMetLeu : 130 .!!.|||:!!..!|||||| !!! !!.!|||||| !|||! !|||!:::!!|||||| nHisValGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeu 263130 : ACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTG : 263186 131 : LysAspAlaLysPheGlyArgTyrValValAlaPheCysAlaThrLeuThrGluPheS : 150 |||:!!||||||!:!||||||||||||!.!|||! !||||||! !!!!! !:!! | LysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrS 263187 : AAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGA : 263246 151 : erThrAlaCysPheThrLeuValArgAlaLeuThrThrGluValIleValValGlyAs : 169 ||! ! !||| !||||||! !|||!!!||||||:!!||||||! !! !||||| erIleMetCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAs 263247 : GCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAA : 263303 170 : nGluThrArgIleMetArgMetLeuProCysValProTyrArgGluLeuValProVal : 188 |||||||||||||:!:||||||||||||||| ! !|||!:!|||:!!:!!|||||| nGluThrArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProVal 263304 : CGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTC : 263360 189 : HisThrSerProThrTyrGluLeuMetLeuIleAlaGlnPheValSerGlyPheValI : 208 !!|||!:!|||||| !!|||:!!.!.||| !.!!||||||:!!|||||||||:!!: AspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleV 263361 : GACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCG : 263420 209 : leSerCysAlaPheValGlyAlaPheSerLeuAlaThrValPheThrIleHisAlaHi : 227 !!!!!....!! !||||||||||||.!!:!!.!!.!!||||||.!! !|||||| alThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCy 263421 : TCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTG : 263477 228 : sSerGlnLeuAsnValLeuMetMetSerIleThrGluLeuValAspGluSerArgGlu : 246 !.!!|||||||||||||||||| !!!|||||||||!!!|||:!!:!!||||||!!: sGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAsp 263478 : CGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGAT : 263534 247 : LysSer : 248 :!!!:! GluAsn 263535 : GAGAAT : 263542 vulgar: gi|805766381|ref|XP_012135246.1| 15 248 . KQ414889.1 262840 263542 + 645 M 24 72 G 0 3 M 209 627 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262841 263542 645 + . gene_id 5 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262841 263542 . + . KQ414889.1 exonerate:protein2genome:local exon 262841 263542 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262841 263542 645 + . alignment_id 5 ; Query gi|805766381|ref|XP_012135246.1| ; Align 262841 16 72 ; Align 262916 40 627 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 633 Query range: 17 -> 388 Target range: 232456 -> 235147 18 : AspTyrSerLeuGlnLeuAsnArgTrpMetLeuLysAlaIleGlyAlaTrpProLys< : 37 !!:||||||:!!|||:!!|||||||||.!.|||! ! !!!!:||||||||||||::: GluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgV 232457 : GAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTG : 232514 38 : ->SerHisSerThrLysPheGluLysIleValSerIleLeuLeuIleIleThrCysTy : 55 !!!.!.!!!:!!!:! !:!!:!!:!!:!!:!!! !||||||! !:!!||||||:! alThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHi 232515 : TTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCA : 232571 56 : rPhePheValLeuIleThrValLeuProCysIleLeuHisLeuIlePheGluAspAsp : 74 !! !.!.:!!:!! !:!!:!!:!!|||||||||||| !:!!:!:||||||||| sSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThr 232572 : TTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACG : 232628 75 : AspLeuArgThrLysValIleIleLeuGlyProLeuSerHisTrpPheLeuGlyGlyV : 94 ..!|||..! !!:!:!!! !:!!||||||:!!||||||!::.!.:!!|||! !: SerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluL 232629 : AGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAAT : 232688 95 : alGlyTyrThrThrLeuLeuValHisAsnLysGluIleLysTrpCysValAspGlnVa : 113 !!..!||| ! !||||||!.! ! !!.!!:||| !::||||||!!:||||| euAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnVa 232689 : TGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGT : 232745 114 : lLysSerAspTrpArgAsnAlaThrArgProGluValGlnGlnLeuMetLeuLysAsp : 132 ||||..!||||||||||||!.!! !!:!|||! !!::.!.||||||||||||:!! lLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsn 232746 : GAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAAC : 232802 133 : AlaLysPheGlyArgTyrValValAlaPheCysAlaThrLeuThrGluPheSerThrA : 152 ||||||.!!||||||! :!!!.!..!.!!..!||| !! !! !.!. !.!!..!! AlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValG 232803 : GCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCG : 232862 153 : laCysPheThrLeuValArgAlaLeuThrThrGluValIleValValGlyAsnGluTh : 171 .!! ! ! !:!!|||! !!.!||| !! !.....!.!! !||||||||||||!: lySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSe 232863 : GCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAG : 232919 172 : rArgIleMetArgMetLeuProCysValProTyrArgGluLeuValProValHisThr : 190 ! ! ||| ! !|||||||||..! !|||! !:!!|||:!! !..!... ! rTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPhe 232920 : TTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTC : 232976 191 : SerProThrTyrGluLeuMetLeuIleAlaGlnPheValSerGlyPheValIleSerC : 210 ||||||||| !!|||:!!|||!!!:!! !|||! !:!!|||||||||:!!:!:!:!! SerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnS 232977 : AGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACT : 233036 211 : ysAlaPheValGlyAlaPheSerLeuAlaThrValPheThrIleHisAlaHisSerGl : 229 !!.! !|||||||||! !.!!|||!.!.!!|||.!..!!!!:|||||| !.!!|| erValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGl 233037 : CCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACA : 233093 230 : nLeuAsnValLeuMetMetSerIleThrGluLeuValAspGlu<-><->SerArgGlu : 246 ||||||||||:!!||| !!.!:!: !!!:|||||||||! ! ..!..!||| nLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGlyGlnGluGlu 233094 : GCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAGGAGGAG : 233150 247 : LysSerPheGluArgAspIleGlyAlaValValArgLysHisLeuSerIlePheSerP : 266 !:! ! :!!||| ! :!!||| !:!!|||..! ! |||||| !!! !!!.!!!! ArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeuArgT 233151 : AGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTAAGGT : 233210 267 : heIleSer >>>> Target Intron 1 >>>> HisIleGluAlaIleMetAsn : 275 :!:!:||| 1493 bp |||..! !:!!! !||| yrLeuSer++ ++LeuIleSerMetLeuThrAsn 233211 : ATTTGTCTgt.........................agTTAATATCAATGTTAACGAAC : 234730 276 : GluIleCysPheMetGluLeuPheLysCysThrPheSerIleCysLeuLeuGlyTyr- : 295 :!!:!! ! !!:! ...||| ::: :::... !:!! ! !|||# LysValHisGlyIleGlyThrLeuLysPheSerSerAsnPheArgValThrLeuTyr# 234731 : AAAGTACATGGGATCGGtacactgaaattttcatcgaattttcgCGTAACTCTTTATG : 234790 296 : -TyrIleLeuMetGluTrpAlaGlnGlnAspPheArgThrMetThrGlyTyrIleSer : 313 # ! !:!!:!: ! !:!!:!:... ... :::.!!..!|||:!!! ! #LysCysIleLeuThrSerGlnGluLysSerLysGluLysLeuAlaSerTyrValIle 234791 : CAAATGTATTTTAACTTCTCAGGAAAAgtcgaaggaaaaattagCTTCATACGTCATC : 234846 314 : ValPheSerSerMetThrPheAsnIlePheMetLeuCysPheIleGlyGluThrIleL : 333 |||!:! !|||||||||||||||||||||:::...|||::!||||||||||||:!!! ValTyrValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuT 234847 : GTGTACGTGTCCATGACATTtaatatattcatattttgttACATCGGAGAGACGCTTA : 234906 334 : ysGluGln >>>> Target Intron 2 >>>> CysAsnLysValGlyGluAla : 342 !|||||| 74 bp |||!.!|||||||||||| ! hrGluGln++ ++CysThrLysValGlyGluLys 234907 : CAGAGCAGgt.........................agTGTACCAAAGTCGGAGAAAAA : 235007 343 : ValTyrMetSerAsnTrpTyrTyrLeuArgGluLysAspValLeuAspLeuMetLeuI : 362 |||||||||!!!.!.|||||| |||! !.!.||| !!.!|||! !|||:!::!!| ValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetI 235008 : GTGTACATGACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGA : 235067 363 : leIleSerArgSerCysValGluThrAsnIleThrAlaGlyLysIleValHisMetSe : 381 |||||||||||||| !!:!!! !! !!!.|||||||||||||||.!!:!!!!.||||| leIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheLeuGlnMetSe 235068 : TCATCTCCAGGTCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTC : 235124 382 : rPheTyrThrPheThrGlyVal : 388 | !! |||||| !! !||| rValAlaThrPheGlyAspVal 235125 : TGTCGCAACATTTGGCGATGTG : 235147 vulgar: gi|805766381|ref|XP_012135246.1| 17 388 . KQ414889.1 232456 235147 + 633 M 19 57 G 0 3 M 207 621 G 0 6 M 25 75 5 0 2 I 0 1489 3 0 2 M 26 78 F 0 2 M 41 123 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232457 235147 633 + . gene_id 6 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232457 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232457 233218 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 233219 233220 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233219 234711 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234710 234711 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234712 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234712 234914 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232457 235147 633 + . alignment_id 6 ; Query gi|805766381|ref|XP_012135246.1| ; Align 232457 18 57 ; Align 232517 37 621 ; Align 233144 244 75 ; Align 234712 269 78 ; Align 234792 295 123 ; Align 234989 336 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 595 Query range: 0 -> 298 Target range: 236798 -> 237766 1 : MetAlaSerSerLysProIleValValHisThrGluLeuGluIleLeuGlyAspTyrS : 20 |||::!!:!..!||| !!:!:|||..!.!.! !.!.:!! ! !.!!||||||| MetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrS 236799 : ATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACA : 236856 21 : erLeuGlnLeuAsnArgTrpMetLeuLysAlaIleGlyAlaTrpProLysSerHisSe : 39 ||||||||! !||||||||| !:!!|||::!||||||.!!||||||:!! !|| erLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGln---PheSe 236857 : GTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAG---TTCTC : 236910 40 : rThrLysPheGluLysIleValSerIleLeuLeuIleIleThrCysTyrPhePheVal : 58 |:!!!!..!!|||!:!! !:!!||| !:!!|||! !:!:! !|||||| ! :!! rSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIle 236911 : GTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATA : 236967 59 : LeuIleThrValLeuProCysIleLeuHisLeuIlePheGluAspAspAspLeuArgT : 78 |||.!!:!!:!!:!!|||||| |||||||||!!:.!.||| ! ! !!!! !| LeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrT 236968 : CTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACA : 237027 79 : hrLysValIleIleLeuGlyProLeuSerHisTrpPheLeuGlyGlyValGlyTyrTh : 97 ||||||||! !||||||||| !!|||||||||||| ! !!! !! !:!!.!!||||| hrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrTh 237028 : CGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACAC : 237084 98 : rThrLeuLeuValHisAsnLysGluIleLysTrpCysValAspGlnValLysSerAsp : 116 |! !||||||:!!!....!||| |||::: ! ! !!:!!!!.:!!:!!!!!||| rMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAsp 237085 : CATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGAT : 237141 117 : TrpArgAsnAlaThrArgProGluValGlnGlnLeuMetLeuLysAspAlaLysPheG : 136 ||||||!...!!|||||| ||| :::::::::||||||||| !!|||||||||. TrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheS 237142 : TGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTA : 237201 137 : lyArgTyrValValAlaPheCysAlaThrLeuThrGluPheSerThrAlaCysPheTh : 155 !!||||||!.!!.! !! !|||.!!! !!!!! !.!. !.!!! ! ! ! !:! erArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCy 237202 : GTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTG : 237258 156 : rLeuValArgAlaLeuThrThrGluValIleValValGlyAsnGluThrArgIleMet : 174 !:!!:!!! !|||! !|||||| !|||:!!||||||||||||:!!|||! !|||:!! sValMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLeu 237259 : TGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTG : 237315 175 : ArgMetLeuProCysValProTyrArgGluLeuValProValHisThrSerProThrT : 194 |||:!!||||||! ! !|||!:!! !|||:!!|||||| !!|||!:! !!! ! ArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetA 237316 : CGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGA : 237375 195 : yrGluLeuMetLeuIleAlaGlnPheValSerGlyPheValIleSerCysAlaPheVa : 213 !!!!::!!:!::!!:!::!!||||||:!!|||||||||:!! !:! !::! :! snAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIl 237376 : ACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGAT : 237432 214 : lGlyAlaPheSerLeuAlaThrValPheThrIleHisAlaHisSerGlnLeuAsnVal : 232 !.!!!.!.!.||||||.!!!:!!.!.!.||| !|||||| !.!!||||||!:!||| eSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerVal 237433 : CAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTG : 237489 233 : LeuMetMetSerIleThrGluLeuValAspGluSerArgGluLysSerPheGlu<->< : 251 :!!|||:!!|||||| !!!:!!!|||..!|||:!!|||...!:!.!! !!: ValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAspH 237490 : GTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATC : 237549 252 : -><->ArgAspIleGlyAlaValValArgLysHisLeuSerIlePhe{Se} >>>> : 265 !!!:||| !.!!:!!|||..!:!!||||||!!!:!:!!.{!:} isPheAspGluIleProThrIleValGluGluHisLeuArgValLeu{As}++ 237550 : ATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTG{AA}gt..... : 237601 266 : Target Intron 1 >>>> {r}PheIleSerHisIleGluAlaIleMetAsnGlu : 276 68 bp {!}|||||||||!.!|||||||||!!:||||||:!! ++{n}PheIleSerArgIleGluAlaMetMetAsnLys 237602 : ....................ag{C}TTCATATCGCGCATAGAGGCAATGATGAACAAA : 237698 277 : IleCysPheMetGluLeuPheLysCysThrPheSerIleCysLeuLeuGlyTyrTyrI : 296 ||||||:!!||||||.!.!:!|||! !.!.:!!:!!||| !||||||||||||| AlaCysPheLeuGluLeuMetArgCysMetIleAlaValCysAlaLeuGlyTyrTyrI 237699 : GCGTGTTTCCTGGAGTTAATGAGGTGCATGATAGCTGTATGCGCACTTGGATATTATA : 237758 297 : leLeuMet : 298 ||!!!||| lePheMet 237759 : TATTCATG : 237766 vulgar: gi|805766381|ref|XP_012135246.1| 0 298 . KQ414889.1 236798 237766 + 595 M 36 108 G 1 0 M 213 639 G 0 9 M 14 42 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236799 237766 595 + . gene_id 7 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 236799 237598 . + . KQ414889.1 exonerate:protein2genome:local exon 236799 237598 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 237599 237600 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 237599 237666 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 237665 237666 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 237667 237766 . + . KQ414889.1 exonerate:protein2genome:local exon 237667 237766 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 236799 237766 595 + . alignment_id 7 ; Query gi|805766381|ref|XP_012135246.1| ; Align 236799 1 108 ; Align 236907 38 639 ; Align 237555 251 42 ; Align 237668 266 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 466 Query range: 17 -> 335 Target range: 212869 -> 214740 18 : AspTyrSerLeuGlnLeuAsnArgTrpMetLeuLysAlaIleGlyAlaTrpPro<->L : 36 ::: |||::: !! !|||||||||:!:|||||| !!! ||| !|||||| | AsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspL 212870 : aatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACA : 212927 37 : ysSerHisSerThrLysPheGluLysIleValSerIleLeuLeuIleIleThrCysTy : 55 |||||:!! !:!! !.!!||||||! !:!!:!! !|||:!!! !! !..!||||| ysSerTyrValSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTy 212928 : AGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTA : 212984 56 : rPhePheValLeuIleThrValLeuProCysIleLeuHisLeuIlePheGluAspAsp : 74 | !!!.:!! ! ! !|||:!!||||||! !|||:!!:!!.!!.!!!!:! ::: rGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGlu 212985 : CGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgag : 213041 75 : AspLeuArgThrLysValIleIleLeuGlyProLeuSerHisTrpPheLeuGlyGlyV : 94 :::::: ::::!! !:!:!!!||| !!!!:!! !!! ! !!.! ! AsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuT 213042 : aatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGT : 213101 95 : alGlyTyrThrThrLeuLeuValHisAsnLysGluIleLysTrpCysValAspGlnVa : 113 ! !||| !:!!|||:!!:!!|||..! ! !!:|||::: !||||||!!:!!.:! rpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMe 213102 : GGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATAT : 213158 114 : lLysSerAspTrpArgAsnAlaThrArgProGluValGlnGlnLeuMetLeuLysAsp : 132 !|||! !||||||!:!||| !|||!.! !|||! !:!!:!!:!!||| ! !:!! tLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsn 213159 : GAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAAC : 213215 133 : AlaLysPheGlyArgTyrValValAlaPheCysAlaThrLeuThrGluPheSerThrA : 152 |||!..||||||!:! :!!|||.!!.!!|||||| !!!!! ! ! .!! !. AlaSerPheGlyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheT 213216 : GCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCA : 213275 153 : laCysPheThrLeuValArgAlaLeuThrThrGluValIleValValGlyAsnGluTh : 171 !!! !!:! !|||||| ! !!:!!!:!.!!!!: !!!:|||!.!! !:!! !. hrPheTyrPheLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAs 213276 : CGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAA : 213332 172 : rArgIleMetArgMetLeuProCysValProTyrArgGluLeuValProValHisThr : 190 ! !! !.!.|||...:!! ! ! ! !! ||| :!!||| !|||!.. ! nValThrPheArgGlnMetValValProValSerArgPheIleValAspValArgTyr 213333 : CGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATAC : 213389 191 : SerProThrTyrGluLeuMetLeuIleAlaGlnPheValSerGlyPheValIleSerC : 210 ||||||..! !!|||:!!.!.!!!:!: !|||.!!:!!:!!||| ! :!!||| !. SerProValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisA 213390 : AGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATG : 213449 211 : ysAlaPheValGlyAlaPheSerLeuAlaThrValPheThrIleHisAlaHisSerGl : 229 .! ! |||! !|||! !|||||||||.!!||||||.!!:!!|||||| !.!!|| laIleAlaValValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGl 213450 : CTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACA : 213506 230 : nLeuAsnValLeuMetMetSerIleThrGluLeuValAsp<-><->GluSerArgGlu : 246 |:!!..!:!!||||||! !!!:!: !.!.|||:!!||| |||..!! !... nMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGlyArgGluAspMetSer 213507 : GATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGC : 213563 247 : LysSerPheGluArgAspIleGlyAlaValValArgLysHisLeuSerIlePhe{Se} : 265 |||!:! ! !!: ! |||!.!!.!:!!|||!.!:!!|||:!! !!|||.!.{!.} LysAsnValAspAspArgIleAlaValIleValAsnGlnHisValArgIleLeu{Ly} 213564 : AAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTG{AA} : 213620 266 : >>>> Target Intron 1 >>>> {r}PheIleSerHisIleGluAlaIleMe : 274 840 bp {!}|||:!!..!! !:!:||| ! !:! ++ ++{s}PheLeuGluLeuValGluLysAlaLe 213621 : gt.........................ag{A}TTCTTAGAGCTCGTGGAGAAAGCACT : 214487 275 : tAsnGluIleCysPheMetGluLeuPheLysCysThrPheSerIleCysLeuLeuGly : 293 :...:!!:!!! !||| ||||||!!. !|||||| ! !:!:!!||||||:!!||| uArgGlnValSerPheAlaGluLeuLeuValCysThrValAsnLeuCysLeuValGly 214488 : TCGGCAAGTATCTTTCGCTGAATTATTAGTATGCACGGTGAATCTCTGTCTCGTTGGA : 214544 294 : TyrTyrIleLeuMet >>>> Target Intron 2 >>>> GluTrpAlaGlnGl : 303 |||||||||:!!! ! 68 bp |||||| !..!.! TyrTyrIleIleThr++ ++GluTrpAsnSerAs 214545 : TATTACATAATAACGgt.........................aggAATGGAATTCGAA : 214642 304 : nAspPheArgThrMetThrGlyTyrIleSerValPheSerSerMetThrPheAsnIle : 322 .:!!!!.! !|||! ..! !|||:!: !:!!!:!! !|||:::|||||||||||| nAsnLeuThrThrThrValThrTyrValValLeuTyrIleSerLeuThrPheAsnIle 214643 : CAATTTAACAACTACAGTAACTTACGTGGTGTTGTATATCTCTCtcactttcaatatt : 214699 323 : PheMetLeuCysPheIleGlyGluThrIleLysGluGln : 335 |||:::...|||::!||||||||| !:!:...|||||| PheIlePheCysTyrIleGlyGluLeuValSerGluGln 214700 : ttcatattttgttaCATAGGCGAGCTTGTGTCTGAACAG : 214740 vulgar: gi|805766381|ref|XP_012135246.1| 17 335 . KQ414889.1 212869 214740 + 466 M 18 54 G 0 3 M 207 621 G 0 6 M 22 66 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 M 33 99 5 0 2 I 0 64 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212870 214740 466 + . gene_id 8 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212870 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 212870 213621 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212870 214740 466 + . alignment_id 8 ; Query gi|805766381|ref|XP_012135246.1| ; Align 212870 18 54 ; Align 212927 36 621 ; Align 213554 243 66 ; Align 214463 266 99 ; Align 214630 299 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 325 Query range: 17 -> 298 Target range: 217171 -> 219252 18 : AspTyrSerLeuGlnLeuAsnArgTrpMetLeuLysAlaIleGlyAlaTrpProLysS : 37 ::: |||:!!|||! !|||||||||:!!|||||| !!!!:||| !||||||!!.| AsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnS 217172 : aatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACT : 217229 38 : erHis<->SerThrLysPheGluLysIleValSerIleLeuLeuIleIleThrCysTy : 55 ||!.! !!!|||!:!! !..!||||||:!!! !! !|||:!!! ! ! !||||| erArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTy 217230 : CACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTA : 217286 56 : rPhePheValLeuIleThrValLeuProCysIleLeuHisLeuIlePheGluAspAsp : 74 | !!!.:!! !.!! ! !!:!!|||||| !:!!:!!:!!.!!.!!|||! !!!: rGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeuGluValGlu 217287 : CGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAA : 217343 75 : AspLeuArgThrLysValIleIleLeuGlyProLeuSerHisTrpPheLeuGlyGlyV : 94 |||||| ! !|||:!!! !:!:!!!|||||||||! ! !!! ! :!!!.! !| AspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValMetAlaPheV 217344 : GATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCG : 217403 95 : alGlyTyrThrThrLeuLeuValHisAsnLysGluIleLysTrpCysValAspGlnVa : 113 || !||| !:!!|||:!!||||||!!. !!!:|||::: !|||||| ::!:! alLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCysValArgArgIl 217404 : TCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAAT : 217460 114 : lLysSerAspTrpArgAsnAlaThrArgProGluValGlnGlnLeuMetLeuLysAsp : 132 !:!! !!||||||||||||!.!! ! !! !:!!! !::!:!! !|||:!! !:!! eGluArgAspTrpArgAsnValArgCysGluLysAspArgGluAlaMetIleValAsn 217461 : CGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAAC : 217517 133 : AlaLysPheGlyArgTyrValValAlaPheCysAlaThrLeuThrGluPheSerThrA : 152 |||!!.||||||||| ! :!!||| !.!!|||.!! !!!!! ! ! !... . AlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheV 217518 : GCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcg : 217577 153 : laCysPheThrLeuValArgAlaLeuThrThrGluValIleValValGlyAsnGluTh : 171 .. ::: ::!!.!! ! !!:!!!:!..!! ! !|||:!! !! !|||! !!. alPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGluAsnGlyAs 217578 : ttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAA : 217634 172 : rArgIleMetArgMetLeuProCysValProTyrArgGluLeuValProValHisThr : 190 !! !! !.!.! ! !||| !! ! ! ! !:! ! :!!:!! !..!!.! ! nLeuThrPheIleProLeuValPheProPheThrLysTyrIleIleAspThrArgTyr 217635 : CCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTAC : 217691 191 : SerProThrTyrGluLeuMetLeuIleAlaGlnPheValSerGlyPheValIleSerC : 210 !!!|||||| !!|||:!!:!!!!!.!! !|||!!.:!!:!!||| !:!!!!: ! ThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisG 217692 : ACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACG : 217751 211 : ysAlaPheValGlyAlaPheSerLeuAlaThrValPheThrIleHisAlaHisSerGl : 229 ! ! !!.!|||! !|||||||||.!!!.!|||.!!:!!|||||| !.!!|| lyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGl 217752 : GAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCA : 217808 230 : nLeuAsnValLeuMetMetSerIleThrGluLeuValAspGluSerArgGluLysSer : 248 |:!!.!.|||||||||! !!!:!: !.!.|||:!!|||! !!! !!!:! !||| nIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgAlaAspMetSer 217809 : GATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGAGCGGATATGAGC : 217865 249 : PheGluArgAsp<-><->IleGlyAlaValValArgLysHisLeuSerIlePheSerP : 266 ! !||| |||!.!::!:!!|||!!!:!!|||:!! !!|||!!.!.!! AspThrValAspGlyArgIleAlaSerIleValSerGlnHisValArgIleLeuLysC 217866 : GATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTAAAGT : 217925 267 : heIleSerHisIleGlu{A} >>>> Target Intron 1 >>>> {la}<->Il : 273 !:!!!!! ! |||! {!} 1226 bp { !} ! ysValArg***IleVal{G}++ ++{lu}ArgTh 217926 : GTGTAAGATAGATCGTT{G}gt.........................ag{AG}AGAAC : 219175 274 : eMetAsnGluIleCysPheMetGluLeuPheLysCysThrPheSerIleCysLeuLeu : 292 !:!:.!.:!!|||! !||| |||!!!.!. !||||||.!...!|||||||||:!! rLeuGlnGlnIleSerPheAlaGluPheLeuGlyCysThrMetAspIleCysLeuVal 219176 : CCTCCAGCAAATCTCTTTCGCTGAATTTCTAGGATGCACCATGGACATATGTCTCGTT : 219232 293 : GlyTyrTyrIleLeuMet : 298 ||||||||||||:!!:!! GlyTyrTyrIleIleVal 219233 : GGATATTACATTATCGTG : 219252 vulgar: gi|805766381|ref|XP_012135246.1| 17 298 . KQ414889.1 217171 219252 + 325 M 21 63 G 0 3 M 214 642 G 0 6 M 19 57 S 0 1 5 0 2 I 0 1222 3 0 2 S 1 2 G 0 3 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217172 219252 325 + . gene_id 9 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217172 217943 . + . KQ414889.1 exonerate:protein2genome:local exon 217172 217943 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217944 217945 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217944 219169 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219168 219169 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219170 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219170 219252 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217172 219252 325 + . alignment_id 9 ; Query gi|805766381|ref|XP_012135246.1| ; Align 217172 18 63 ; Align 217238 39 642 ; Align 217886 253 57 ; Align 219175 273 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 297 Query range: 258 -> 394 Target range: 279891 -> 280453 259 : LysHisLeuSerIlePheSerPheIleSerHisIleGluAlaIleMetAsnGluIleC : 278 ||| ! !!!!||||||||||||||||||!!.||||||!.!:!!:!!|||||||||| LysIleArgThrIlePheSerPheIleSerGlnIleGluGlyLeuLeuAsnGluIleC 279892 : AAAATACGAACGATTTTCAGTTTTATATCGCAAATCGAGGGGCTCCTGAACGAAATAT : 279949 279 : ysPheMetGluLeuPheLysCysThrPheSerIleCysLeuLeuGlyTyrTyrIleLe : 297 |||||:!:|||:!!.!! ||||||!!.!:!||||||!!!||| !||||||:!!|| ysPheValGluValIleGlyCysThrLeuAsnIleCysPheLeuThrTyrTyrLeuLe 279950 : GTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGACATATTATTTACT : 280006 298 : uMet >>>> Target Intron 1 >>>> GluTrpAlaGlnGlnAspPheArgT : 307 |! ! 80 bp ||||||! !|||.!.||| !! ! uThr++ ++GluTrpGluGlnAsnAspAlaIleG 280007 : CACGgt.........................agGAATGGGAGCAAAATGACGCTATAG : 280116 308 : hrMetThrGlyTyrIleSerValPheSerSerMetThrPheAsnIlePheMetLeuCy : 326 !! ! ! !|||:!!! ! !!.!!! !|||:!:|||||||||:!!|||!!:||||| lyThrPheThrTyrLeuMetPheLeuIleSerLeuThrPheAsnValPheIleLeuCy 280117 : GAACGTTCACGTATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTG : 280173 327 : sPheIleGlyGluThrIleLysGluGln >>>> Target Intron 2 >>>> C : 336 |!:!|||||||||! !:!!...|||||| 74 bp | sTyrIleGlyGluIleLeuSerGluGln++ ++C 280174 : TTACATCGGTGAAATTCTCTCCGAACaggt.........................agT : 280277 337 : ysAsnLysValGlyGluAlaValTyrMetSerAsnTrpTyrTyrLeuArgGluLysAs : 355 || |||||||||! !:!!..!||||||! !:!!|||||| !|||! !! !||| ! ysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLy 280278 : GCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAA : 280334 356 : pValLeuAspLeuMetLeuIleIleSerArgSerCysValGluThrAsnIleThrAla : 374 !.!! !! !|||!!:||||||.!!:!! !||| ! !...! !!!.:!!|||||| sAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAla 280335 : AGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCT : 280391 375 : GlyLysIleValHisMetSerPheTyrThrPheThrGlyValArgPheProAsnPheS : 394 |||||||||:!! !!:!:|||!!. !!:!||| !.!!|||!!!.!! !|||!!.| GlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuS 280392 : GGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTAT : 280451 395 : er : 394 || er 280452 : CC : 280453 vulgar: gi|805766381|ref|XP_012135246.1| 258 394 . KQ414889.1 279891 280453 + 297 M 40 120 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 279892 280453 297 + . gene_id 10 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 279892 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279892 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280453 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280453 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 279892 280453 297 + . alignment_id 10 ; Query gi|805766381|ref|XP_012135246.1| ; Align 279892 259 120 ; Align 280092 299 111 ; Align 280277 336 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 297 Query range: 258 -> 394 Target range: 286678 -> 287240 259 : LysHisLeuSerIlePheSerPheIleSerHisIleGluAlaIleMetAsnGluIleC : 278 ||| ! !!!!||||||||||||||||||!!.||||||!.!:!!:!:|||||||||| LysIleArgThrIlePheSerPheIleSerGlnIleGluGlyLeuLeuAsnGluIleC 286679 : AAAATACGAACGATTTTCAGTTTTATATCGCAAATCGAGGGGCTCCTAAACGAAATAT : 286736 279 : ysPheMetGluLeuPheLysCysThrPheSerIleCysLeuLeuGlyTyrTyrIleLe : 297 |||||:!:|||:!!.!! ||||||!!.!:!||||||!!!||||||||||||:!!|| ysPheValGluValIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLe 286737 : GTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTACT : 286793 298 : uMet >>>> Target Intron 1 >>>> GluTrpAlaGlnGlnAspPheArgT : 307 |! ! 80 bp ||||||! !|||...!!: !! ! uThr++ ++GluTrpGluGlnSerGluThrIleG 286794 : GACGgt.........................agGAATGGGAGCAAAGTGAAACTATAG : 286903 308 : hrMetThrGlyTyrIleSerValPheSerSerMetThrPheAsnIlePheMetLeuCy : 326 !! !! ! !||| !!!!:!!.!. !|||.!.|||||||||:!!|||!!:||||| lyThrIleThrTyrCysThrLeuLeuValSerPheThrPheAsnValPheIleLeuCy 286904 : GAACGATCACGTATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTG : 286960 327 : sPheIleGlyGluThrIleLysGluGln >>>> Target Intron 2 >>>> C : 336 |!:!|||||||||! !:!!...|||||| 74 bp | sTyrIleGlyGluIleLeuSerGluGln++ ++C 286961 : TTACATCGGTGAAATTCTCTCCGAACaggt.........................agt : 287064 337 : ysAsnLysValGlyGluAlaValTyrMetSerAsnTrpTyrTyrLeuArgGluLysAs : 355 || ||||||||| !:!!..!||||||! !:!!|||||| !|||! !! !||| ysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysTh 287065 : GCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAAC : 287121 356 : pValLeuAspLeuMetLeuIleIleSerArgSerCysValGluThrAsnIleThrAla : 374 !.!! !! !|||!!:||||||.!!:!! !||| ! !...! !!!.:!!|||||| rAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAla 287122 : AGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCT : 287178 375 : GlyLysIleValHisMetSerPheTyrThrPheThrGlyValArgPheProAsnPheS : 394 |||||||||:!! !!:!:|||!!. !!:!||| !.!!|||!!!.!! !|||!!.| GlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuS 287179 : GGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTAT : 287238 395 : er : 394 || er 287239 : CC : 287240 vulgar: gi|805766381|ref|XP_012135246.1| 258 394 . KQ414889.1 286678 287240 + 297 M 40 120 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286679 287240 297 + . gene_id 11 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286679 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286679 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287240 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287240 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286679 287240 297 + . alignment_id 11 ; Query gi|805766381|ref|XP_012135246.1| ; Align 286679 259 120 ; Align 286879 299 111 ; Align 287064 336 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 283 Query range: 19 -> 267 Target range: 221381 -> 222134 20 : SerLeuGlnLeuAsnArgTrpMetLeuLysAlaIleGlyAlaTrpProLysSer<->H : 38 |||:!!||||||!:!||||||!!:|||||| !!||||||!.!||||||!!.||| : SerValGlnLeuSerArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaA 221382 : AGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCA : 221439 39 : isSerThrLysPheGluLysIleValSerIleLeuLeuIleIleThrCysTyrPhePh : 57 !!! !:!!! ! ! |||!:! !:!!! ! |||:!!! !:!!..!|||||| !.! snIleSerThrValGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLe 221440 : ACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCT : 221496 58 : eValLeuIleThrValLeuProCysIleLeuHisLeuIlePheGluAspAspAspLeu : 76 .:!! !.!! !:!!:!!||||||! !|||:!!:!!|||.!!|||! !!:|||:!! uIleThrPheLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspVal 221497 : GATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTC : 221553 77 : ArgThrLysValIleIleLeuGlyProLeuSerHisTrpPheLeuGlyGlyValGlyT : 96 !!.!!:!:!!! !:!:||||||||||||||| !!! ! :!!!.! !:!! !| TyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysT 221554 : TACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGT : 221613 97 : yrThrThrLeuLeuValHisAsnLysGluIleLysTrpCysValAspGlnValLysSe : 115 || ! !|||:!!:!!:!!.!.!!.!!:|||::: !|||:!!!!:!:::!!:!!!! yrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTr 221614 : ATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATG : 221670 116 : rAspTrpArgAsnAlaThrArgProGluValGlnGlnLeuMetLeuLysAspAlaLys : 134 !||||||!:!||| !||| ! !!:!!! !:!!.!.:!!|||:!!:!!:!!|||! pAspTrpLysAsnIleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIle 221671 : GGATTGGAAGAATATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATT : 221727 135 : PheGlyArgTyrValValAlaPheCysAlaThrLeuThrGluPheSerThrAlaCysP : 154 ||||||||| :!!:!! !.!!|||.!! !!!!! ! ! !... ... : PheGlyArgArgLeuIleMetIleCysThrPhePheMetTyrSerGlyPheValPheT 221728 : TTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGTACAGTggtttcgtttttt : 221787 155 : heThrLeuValArgAlaLeuThrThrGluValIleValValGlyAsnGluThrArgIl : 173 :: ::!!.!! ! !!!!!!:!..!! !||| !!.! !:!! ... yrTyrIleAlaIleProPheSerValGlyLysIleProAlaGlnAspValAsnValTh 221788 : attacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaac : 221844 174 : eMetArgMetLeuProCysValProTyrArgGluLeuValProValHisThrSerPro : 192 ... :!! !! ! ! !! ||| :!!||| !..!!.. !|||||| rPheIleProMetValPheProPheSerArgPheIleValAspThrArgTyrSerPro 221845 : ttttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCT : 221901 193 : ThrTyrGluLeuMetLeuIleAlaGlnPheValSerGlyPheValIleSerCysAlaP : 212 ..! !!|||:!!:!!!!! !|||.!!:!!:!!||| !:!!!!: ! !! ! ValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleT 221902 : GTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTA : 221961 213 : heValGlyAlaPheSerLeuAlaThrValPheThrIleHisAlaHisSerGlnLeuAs : 231 !!.!|||! !||||||!.!.!!:!!|||.!!:!:|||||| !.!!|||:!!.! hrSerAlaAlaCysSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMetGl 221962 : CATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCA : 222018 232 : nValLeuMetMetSerIleThrGluLeuValAspGluSerArgGlu<-><->LysSer : 248 .|||||||||! !!!:!:! !.!.|||:!!:!!! !! !!!: !!.!:! nValLeuMetSerTrpLeuLysHisLeuIleAsnGlyArgAlaAspMetCysAsnAsn 222019 : AGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGCCGGGCGGATATGTGTAACAAC : 222075 249 : PheGluArgAspIleGlyAlaValValArgLysHisLeuSerIlePheSerPheIle : 267 ! !!:||| |||!.! !:!!|||!.!:!!|||:!! !!|||!!...!!:!:!! ValAspArgArgIleAlaLysIleValAsnGlnHisValArgIleLeuGlnTyrVal 222076 : GTGGATAGGAGAATAGCGAAGATTGTGAATCAACACGTTCGAATATTGCAGTATGTA : 222134 vulgar: gi|805766381|ref|XP_012135246.1| 19 267 . KQ414889.1 221381 222134 + 283 M 18 54 G 0 3 M 209 627 G 0 6 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221382 222134 283 + . gene_id 12 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221382 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221382 222134 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221382 222134 283 + . alignment_id 12 ; Query gi|805766381|ref|XP_012135246.1| ; Align 221382 20 54 ; Align 221439 38 627 ; Align 222072 247 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 274 Query range: 298 -> 389 Target range: 272836 -> 273179 299 : GluTrpAlaGlnGlnAspPheArgThrMetThrGlyTyrIleSerValPheSerSerM : 318 ||||||.!!.!.!!.||||||!:!!:!:!:||| !|||.!!! !:!!.!!! !|||| GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 319 : etThrPheAsnIlePheMetLeuCysPheIleGlyGluThrIleLysGluGln >>> : 336 |||||||||||||||||:::::!|||!:!|||||||||! !:!!! !|||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 337 : > Target Intron 1 >>>> CysAsnLysValGlyGluAlaValTyrMetSerA : 347 70 bp |||...|||:::||||||!.!|||||||||!!!| ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 348 : snTrpTyrTyrLeuArgGluLysAspValLeuAspLeuMetLeuIleIleSerArgSe : 366 ||||||||||||||! !! ||||||:!!|||||||||!!:|||||||||||||||!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 367 : rCysValGluThrAsnIleThrAlaGlyLysIleValHisMetSerPheTyrThrPhe : 385 ! !!|||! !! !!!.||||||||||||!:!||||||! !|||||| ! ||||||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 386 : ThrGlyValArg : 389 !! !|||||| GlyAspValArg 273166 : GGCGATGTACgt : 273179 vulgar: gi|805766381|ref|XP_012135246.1| 298 389 . KQ414889.1 272836 273179 + 274 M 37 111 5 0 2 I 0 66 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273179 274 + . gene_id 13 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273179 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273179 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273179 274 + . alignment_id 13 ; Query gi|805766381|ref|XP_012135246.1| ; Align 272837 299 111 ; Align 273018 336 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 257 Query range: 17 -> 248 Target range: 226927 -> 227623 18 : AspTyrSerLeuGlnLeuAsnArgTrpMetLeuLysAlaIleGlyAlaTrpProLysS : 37 :!! |||:!!|||||||||||||||:!!|||||| !!:!!||| !||||||..!| AsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerS 226928 : AACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGT : 226985 38 : erHis<->SerThrLysPheGluLysIleValSerIleLeuLeuIleIleThrCysTy : 55 ||!.! |||:!!::!.!.! !!:! ! !!||| |||:!! !.!! !||||| erArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTy 226986 : CGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTA : 227042 56 : rPhePheValLeuIleThrValLeuProCysIleLeuHisLeuIlePheGluAspAsp : 74 | .!.:!! !.!! !:!!:!! !! !! !|||:!!:!!:!!.!.|||! ! rAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLys 227043 : CGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAA : 227099 75 : AspLeuArgThrLysValIleIleLeuGlyProLeuSerHisTrpPheLeuGlyGlyV : 94 ! ! ! !!.!! !:!!! !!!::!!||||||:!!||| !!:: :!!..! !: GlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuL 227100 : GGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCC : 227159 95 : alGlyTyrThrThrLeuLeuValHisAsnLysGluIleLysTrpCysValAspGlnVa : 113 !! !|||:!!! !||| ! !!|||.!. ! !!:||| !||||||!!:!:!:! euLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIl 227160 : TCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGAT : 227216 114 : lLysSerAspTrpArgAsnAlaThrArgProGluValGlnGlnLeuMetLeuLysAsp : 132 !|||!!!||||||!:!||| !! ! !! !|||! !::!.!.:!!|||:!!! ! !! eLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyr 227217 : CAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTAC : 227273 133 : AlaLysPheGlyArgTyrValValAlaPheCysAlaThrLeuThrGluPheSerThrA : 152 ||| ! !:!|||||| ! :!!:!!.!!.!!|||.!! !!!!..! ||| . AlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheV 227274 : GCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcg : 227333 153 : laCysPheThrLeuValArgAlaLeuThrThrGluValIleValValGlyAsnGluTh : 171 .. ||| :!!||| ! !!:!!!.!.!!! ! !:!!!.!..!! !:!!! !!. alPhePheTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGlyAs 227334 : tatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAA : 227390 172 : rArgIleMetArgMetLeuProCysValProTyrArgGluLeuValProValHisThr : 190 !!.!! ! ! !..!:!!|||! ! ! ! !:! :!!!.! !|||!.! ! nHisSerTyrIleGlnMetProPheProPheProLysIleIleAlaAspValArgTyr 227391 : CCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTAC : 227447 191 : SerProThrTyrGluLeuMetLeuIleAlaGlnPheValSerGlyPheValIleSerC : 210 |||||| ! !!|||:!!.!.!!! !.!|||||||||!!!|||.!!|||:!: ! SerProPheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuHisG 227448 : AGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACG : 227507 211 : ysAlaPheValGlyAlaPheSerLeuAlaThrValPheThrIleHisAlaHisSerGl : 229 !!!.! !!.!|||! !|||:!!|||.!!:!!.!!.!!:!!|||||| !.!!|| lyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGl 227508 : GTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCA : 227564 230 : nLeuAsnValLeuMetMetSerIleThrGluLeuValAspGluSerArgGluLysSer : 248 |:!!.!.||||||:!! !!!:!: !.!.|||:!!|||! !!! !!!:! !||| nMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGlyArgAlaAspMetSer 227565 : GATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGCAGAGCGGATATGAGC : 227621 vulgar: gi|805766381|ref|XP_012135246.1| 17 248 . KQ414889.1 226927 227623 + 257 M 21 63 G 0 3 M 210 630 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226928 227623 257 + . gene_id 14 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226928 227623 . + . KQ414889.1 exonerate:protein2genome:local exon 226928 227623 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226928 227623 257 + . alignment_id 14 ; Query gi|805766381|ref|XP_012135246.1| ; Align 226928 18 63 ; Align 226994 39 630 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 248 Query range: 181 -> 391 Target range: 300222 -> 302045 182 : TyrArgGluLeuValProValHisThrSerProThrTyrGluLeuMetLeuIleAlaG : 201 ||| ! !!!!:!! !..!!!.||||||||||||||||||::::::...... . TyrAspTrpPheIleAspThrGlnThrSerProThrTyrGluIleValPhePhePheH 300223 : TACGATTGGTTTATCGATACACAAACCAGTCCTACCTACGAgatcgtatttttctttc : 300280 202 : lnPheValSerGlyPheValIleSerCysAlaPheValGlyAlaPheSerLeuAlaTh : 220 .. !!:!!!.!.!.:!!!!:! ! !!.! ..!!.!|||!:!|||||||||.! isCysPheAlaAlaMetIleMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAl 300281 : actgttTCGCAGCGATGATCATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGC : 300337 221 : rValPheThrIleHisAlaHisSerGlnLeuAsnValLeuMetMetSerIleThrGlu : 239 !:!!|||..!! !||| ! !.!!|||:!!.!.:!!! !||| !!!!:!: !!!: aIlePheValThrHisIleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAsp 300338 : GATATTCGTCACTCATATCTGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGAT : 300394 240 : LeuValAspGluSerArgGluLysSerPheGluArgAsp<->IleGlyAlaValValA : 258 ||||||!!:..!!!! !!||||||..! !! ! !||| :!:! !!.!:!!|||| LeuValGluArgThrGlyGluLysAspAspGlyProAspProLeuValValIleValA 300395 : CTGGTGGAGAGGACGGGAGAGAAGGACGACGGTCCTGATCCTTTGGTCGTTATCGTTC : 300454 259 : rgLysHisLeuSerIlePhe{Se} >>>> Target Intron 1 >>>> {r}Ph : 266 || ! |||:!!!.!:!!!!.{!!} 1110 bp {!} rgAspHisValLysValLeu{Ar}++ ++{g}As 300455 : GAGATCACGTGAAGGTTTTA{AG}gt.........................ag{A}GA : 301588 267 : eIleSerHisIleGluAlaIleMetAsnGluIleCysPheMetGluLeuPheLysCys : 285 ! !!! !.!!... ! !! !.!.:!!||| ::: |||::: pProCysSerPheArg***ProThrPheHisLeuCysAlaValIleLysPheGluSer 301589 : CCCGTGTTCCTTCCGTTAGCCAACTTTTCATCTCTGCgctgtaattaaatttgaatct : 301645 286 : ThrPheSerIleCysLeuLeuGlyTyrTyrIleLeuMetGluTrpAlaGlnGlnAspP : 305 |||!!.!:! ! !!!||| !! ! !!!! !|||||| !.!....||| ThrLeuAsnAlaLysPheLeuArgValIle***Phe***GluTrpGlnAsnSerAspT 301646 : ACTTTAAATGCAAAGTTTTTACGAGTAATTTGATTTTAGGAATGGCAAAATAGCGACA : 301705 306 : heArgThrMetThrGlyTyrIleSerValPheSerSerMetThrPheAsnIlePheMe : 324 ! !.!!||| ! !!:!.!!!!!:!!!!.!!!|||.!.|||||||||||||||!! hrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAsnIlePheIl 301706 : CGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATATTCAT : 301762 325 : tLeuCysPheIleGlyGluThrIleLysGluGln >>>> Target Intron 2 > : 336 :!!!|||!:!|||||||||! !:!!...|||||| 80 bp ePheCysTyrIleGlyGluIleLeuSerGluGln++ 301763 : ATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt...................... : 301800 337 : >>> CysAsnLysValGlyGluAlaValTyrMetSerAsnTrpTyrTyrLeuArgGl : 353 |||!:!:!!:!!|||..!||| !||| !! !:!!|||||| !!|||! !! ++CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAl 301801 : ...agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGC : 301929 354 : uLysAspValLeuAspLeuMetLeuIleIleSerArgSerCysValGluThrAsnIle : 372 !||| !.!! !||||||!!:|||:!!! ! !! !||| ! ! !!!!.:!! aLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeu 301930 : GAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTT : 301986 373 : ThrAlaGlyLysIleValHisMetSerPheTyrThrPheThrGlyValArgPhePro : 391 |||||||||||||||:!! !!:!:|||!!. !!||||||!:!..!|||!.! !!||| ThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerValAsnValPro 301987 : ACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTAAATGTCCCA : 302045 vulgar: gi|805766381|ref|XP_012135246.1| 181 391 . KQ414889.1 300222 302045 + 248 M 71 213 G 0 3 M 12 36 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 70 210 5 0 2 I 0 76 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300223 302045 248 + . gene_id 15 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300223 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300223 300476 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302045 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302045 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300223 302045 248 + . alignment_id 15 ; Query gi|805766381|ref|XP_012135246.1| ; Align 300223 182 213 ; Align 300439 253 36 ; Align 301588 266 210 ; Align 301878 336 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 218 Query range: 19 -> 209 Target range: 294690 -> 295263 20 : SerLeuGlnLeuAsnArgTrpMetLeuLysAlaIleGlyAlaTrpPro<-><->LysS : 37 ||||||:!!! ! !||| !!:!!|||||| !!|||||| !|||||| ! | SerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrS 294691 : AGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACA : 294748 38 : erHisSerThrLysPheGluLysIleValSerIleLeuLeuIleIleThrCysTyrPh : 56 |||||!!!!:!|||.!..!.|||:!!:!!||||||:!!|||||| !||| !! erHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLe 294749 : GTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTT : 294805 57 : ePheValLeuIleThrValLeuProCysIleLeuHisLeuIlePheGluAspAspAsp : 75 . !||||||.!!..!:!!:!!|||||| !! ! !! !:!!|||.!.! ::: uThrValLeuPheValLeuValProCysGlyTyrPheCysValPheHisValLysAsn 294806 : GACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaac : 294862 76 : LeuArgThrLysValIleIleLeuGlyProLeuSerHisTrpPheLeuGlyGlyValG : 95 :::::: |||:!!! !:!!|||||||||:!! !:!!! .!.|||..! !:!! ValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuA 294863 : gtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCA : 294922 96 : lyTyrThrThrLeuLeuValHisAsnLysGluIleLysTrpCysValAspGlnValLy : 114 !!|||!:! !|||:!!:!! ! !.. ! !.!!||| |||:!!!!:.!.:!!:! rgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCysIleGluAspIleGl 294923 : GGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGA : 294979 115 : sSerAspTrpArgAsnAlaThrArgProGluValGlnGlnLeuMetLeuLysAspAla : 133 !!:!||||||!:! ! !!.!|||||| !!:! !:!!|||:!!|||:!!||| uAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIleMetIleLysAsnAla 294980 : GAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCG : 295036 134 : LysPheGlyArgTyrValValAlaPheCysAlaThrLeuThrGluPheSerThrAlaC : 153 ! ! !! !!:! :!!..!!.! !! !.!!! !:!!! ! ! !|||.!!!.!! MetValThrGlnArgMetThrValAlaPheThrIleIleIleTyrSerSerAlaValS 295037 : ATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGT : 295096 154 : ysPheThrLeuValArgAlaLeuThrThrGluValIleValValGlyAsnGluThrAr : 172 !:! ! !:!! ... :::......:!: ! !..!!!.:!!!.!!. erTyrHisAlaIleValProPhePheSerAsnAlaLeu---GluAsnLysLysAsnAs 295097 : CGTATCACGCCATTGtgccatttttttcaaacgctTTG---GAGAACAAGAAGAATAA : 295150 173 : gIleMetArgMetLeuProCysValProTyrArgGluLeuValProValHisThrSer : 191 !! !!:||| !|||||| ! ! !|||..! !!!!||| !!.!:!!:!!||| nThrIleArgAlaLeuProIleProGlyTyrGluLeuPheValAspAlaTyrSerSer 295151 : TACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGT : 295207 192 : ProThrTyrGluLeuMetLeuIleAlaGlnPheValSerGlyPheValIleSer : 209 ||||||||||||:!!!!: !! ! !! ||||||! !..!||| !!:!!!:! ProThrTyrGluIleIleArgThrHisLeuPheValTyrSerPhePheValAsn 295208 : CCTACCTACGAGATCATAAGAACTCATCTCTTTGTTTACTCGTTCTTCGTCAAC : 295263 vulgar: gi|805766381|ref|XP_012135246.1| 19 209 . KQ414889.1 294690 295263 + 218 M 16 48 G 0 6 M 130 390 G 1 0 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294691 295263 218 + . gene_id 16 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294691 295263 . + . KQ414889.1 exonerate:protein2genome:local exon 294691 295263 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294691 295263 218 + . alignment_id 16 ; Query gi|805766381|ref|XP_012135246.1| ; Align 294691 20 48 ; Align 294745 36 390 ; Align 295135 167 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 216 Query range: 18 -> 240 Target range: 289735 -> 290401 19 : TyrSerLeuGlnLeuAsnArgTrpMetLeuLysAlaIleGlyAlaTrpPro<-><->L : 36 |||!!!!!!:!!||| !!.!|||!!:|||||| !!|||||| !!::||| TyrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrProPheValP 289736 : TACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCT : 289793 37 : ysSerHisSerThrLysPheGluLysIleValSerIleLeuLeuIleIleThrCysTy : 55 |||!.!:!!!:!!:! !|||::!! !.!|||:!:|||||||||:!:..!|||! heSerArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLeuValCysCy 289794 : TTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTG : 289850 56 : rPhePheValLeuIleThrValLeuProCysIleLeuHisLeuIlePheGluAspAsp : 74 !! .!!:!!! !.!!! !:!!:!!|||! !! !! !|||:!!:!!|||...|||:!! sSerIleLeuGlnPheIleIleValProPheSerHisHisValLeuPheSerAspAsn 289851 : CTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAAC : 289907 75 : AspLeuArgThrLysValIleIleLeuGlyProLeuSerHisTrpPheLeuGlyGlyV : 94 |||:!!!.!||| |||! ! !||||||||||||!!! !!! !!. ! ! ! AspMetAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuThrThrPheP 289908 : GACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCT : 289967 95 : alGlyTyrThrThrLeuLeuValHisAsnLysGluIleLysTrpCysValAspGlnVa : 113 !! !||| ! !!!! !:!! ! ..!..!! !||| ! |||||| ! !!.:! heLysTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysValLysHisIl 289968 : TCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACAT : 290024 114 : lLysSerAspTrpArgAsnAlaThrArgProGluValGlnGlnLeuMetLeuLysAsp : 132 !:!!!!!||||||!:!! ! ! ! !!!: !!:: :!!||||||!:! !! eGluArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMetLeuArgTyr 290025 : CGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATAC : 290081 133 : AlaLysPheGlyArgTyrValValAlaPheCysAlaThrLeuThrGluPheSerThrA : 152 !.!! !.!..!!||| !!:!!:!! !.!.||||||! !!!! ! ! .!..!! ! ValThrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyL 290082 : GTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTC : 290141 153 : laCysPheThrLeuValArgAlaLeuThrThrGluValIleValValGlyAsnGluTh : 171 !! !!:!!.! !|||! ! !!||| !:!!:!! !! !||| !||||||! !|| euSerTyrAsnThrValIleProLeuPheSerLysLysSerValAsnGlyAsnValTh 290142 : TGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGGTAACGTGAC : 290198 172 : rArgIleMetArgMetLeuProCysValProTyrArgGluLeuValProValHisThr : 190 | !!:||| ||| !!! ! ! !|||..!|||!!! !! !|||!!.! ! r------IleArgProLeuThrTyrProGlyTyrGluGluPhePheAspValGlnLys 290199 : T------ATCAGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAG : 290249 191 : SerProThrTyrGluLeuMetLeuIleAlaGlnPheValSerGlyPheValIleSerC : 210 ||||||.!!||||||:!!:!:!!! ! !!!.! !|||! !! !.!.:!!! :!! SerProAlaTyrGluIleValPheCysMetHisCysValTyrValMetIleThrAlaA 290250 : AGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGA : 290309 211 : ysAlaPheValGlyAlaPheSerLeuAlaThrValPheThrIleHisAlaHisSerGl : 229 ! ! :!!!.!|||!:!||||||.!!|||:!!|||.!!! !|||.!! !.!!|| snIleThrMetAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGl 290310 : ACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCA : 290366 230 : nLeuAsnValLeuMetMetSerIleThrGluLeu : 240 |:!!!!.:!!! !! !! ! !!:!: !!!:||| nIleLysIleGlnThrThrArgLeuGluAspLeu 290367 : GATTAAGATACAAACGACGCGGCTGGAGGATCTG : 290401 vulgar: gi|805766381|ref|XP_012135246.1| 18 240 . KQ414889.1 289735 290401 + 216 M 17 51 G 0 6 M 136 408 G 2 0 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289736 290401 216 + . gene_id 17 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289736 290401 . + . KQ414889.1 exonerate:protein2genome:local exon 289736 290401 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289736 290401 216 + . alignment_id 17 ; Query gi|805766381|ref|XP_012135246.1| ; Align 289736 19 51 ; Align 289793 36 408 ; Align 290201 174 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 201 Query range: 334 -> 389 Target range: 264723 -> 264888 335 : GlnCysAsnLysValGlyGluAlaValTyrMetSerAsnTrpTyrTyrLeuArgGluL : 354 ||||||!!.||||||||||||!.!|||||||||||||||||||||||||||! ! ! | GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 355 : ysAspValLeuAspLeuMetLeuIleIleSerArgSerCysValGluThrAsnIleTh : 373 |||||:!!|||||||||!!:|||||||||! !|||||| !!|||! ! !!!..!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 374 : rAlaGlyLysIleValHisMetSerPheTyrThrPheThrGlyValArg : 389 |||||||||||||:!!|||||||||.!.|||||||||!:!! !|||||| rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspValArg 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTACGT : 264888 vulgar: gi|805766381|ref|XP_012135246.1| 334 389 . KQ414889.1 264723 264888 + 201 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264888 201 + . gene_id 18 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264888 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264888 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264888 201 + . alignment_id 18 ; Query gi|805766381|ref|XP_012135246.1| ; Align 264724 335 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 194 Query range: 333 -> 389 Target range: 277548 -> 277716 334 : GluGlnCysAsnLysValGlyGluAlaValTyrMetSerAsnTrpTyrTyrLeuArgG : 353 ..!||||||!!.||||||||||||!.!|||||||||!!!|||||||||||||||! !! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 354 : luLysAspValLeuAspLeuMetLeuIleIleSerArgSerCysValGluThrAsnIl : 372 !:||||||:!!|||:!!|||:!:|||||||||||||||||| !!::: ...|| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 373 : eThrAlaGlyLysIleValHisMetSerPheTyrThrPheThrGlyValArg : 389 |||||||||||||::::::...|||||| ! ||||||||| !! !|||||| eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspValArg 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTACGT : 277716 vulgar: gi|805766381|ref|XP_012135246.1| 333 389 . KQ414889.1 277548 277716 + 194 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277716 194 + . gene_id 19 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277549 277716 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277716 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277716 194 + . alignment_id 19 ; Query gi|805766381|ref|XP_012135246.1| ; Align 277549 334 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 185 Query range: 334 -> 390 Target range: 258462 -> 258630 335 : GlnCysAsnLysValGlyGluAlaValTyrMetSerAsnTrpTyrTyrLeuArgGluL : 354 ||||||!!.|||||||||!!:!.!|||||||||!!!:!!||||||||||||! !!!:| GlnCysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspL 258463 : CAGTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACA : 258520 355 : ysAspValLeuAspLeuMetLeuIleIleSerArgSerCysValGluThrAsnIleTh : 373 || :!!|||||||||!!:|||:!!|||:!!|||||| !!|||! ..!.!.||||| ysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleTh 258521 : AAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCAC : 258577 374 : rAlaGlyLysIleValHisMetSerPheTyrThrPheThrGlyValArgPhe : 390 ||||||||||... |||||||||.!!|||||||||!:!! !|||!!!!:! rAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAspValSerTyr 258578 : CGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATGTGAGTTAT : 258630 vulgar: gi|805766381|ref|XP_012135246.1| 334 390 . KQ414889.1 258462 258630 + 185 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258463 258630 185 + . gene_id 20 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 258463 258630 . + . KQ414889.1 exonerate:protein2genome:local exon 258463 258630 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258463 258630 185 + . alignment_id 20 ; Query gi|805766381|ref|XP_012135246.1| ; Align 258463 335 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 181 Query range: 334 -> 394 Target range: 238625 -> 238805 335 : GlnCysAsnLysValGlyGluAlaValTyrMetSerAsnTrpTyrTyrLeuArgGluL : 354 |||||| ||||||||||||!.!|||||||||!!!:!!||||||||||||! !:!!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 355 : ysAspValLeuAspLeuMetLeuIleIleSerArgSerCysValGluThrAsnIleTh : 373 :! :!!|||||||||!!:|||||||||!.!|||||| !|||! ..!!!.:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 374 : rAlaGlyLysIleValHisMetSerPheTyrThrPheThrGlyValArgPheProAsn : 392 ||||||||||:!!:!!|||||||||.!!||||||||| !! !|||!!! !!||| rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 393 : PheSer : 394 .!!:!! LeuAla 238798 : CTTGCT : 238805 vulgar: gi|805766381|ref|XP_012135246.1| 334 394 . KQ414889.1 238625 238805 + 181 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238805 181 + . gene_id 21 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238805 181 + . alignment_id 21 ; Query gi|805766381|ref|XP_012135246.1| ; Align 238626 335 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 181 Query range: 334 -> 392 Target range: 254271 -> 254445 335 : GlnCysAsnLysValGlyGluAlaValTyrMetSerAsnTrpTyrTyrLeuArgGluL : 354 |||||| ||||||||||||!.!|||||||||!!!:!!||||||||||||! !:!!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 355 : ysAspValLeuAspLeuMetLeuIleIleSerArgSerCysValGluThrAsnIleTh : 373 :! :!!|||||||||!!:|||||||||!!!|||||| !|||! ..!.!.||||| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 374 : rAlaGlyLysIleValHisMetSerPheTyrThrPheThrGlyValArgPheProAsn : 392 ||||||||||||| |||||||||.!!||||||||| !! !|||!!! !!||| rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 254443 vulgar: gi|805766381|ref|XP_012135246.1| 334 392 . KQ414889.1 254271 254445 + 181 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254445 181 + . gene_id 22 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254445 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254445 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254445 181 + . alignment_id 22 ; Query gi|805766381|ref|XP_012135246.1| ; Align 254272 335 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 334 -> 388 Target range: 244655 -> 244817 335 : GlnCysAsnLysValGlyGluAlaValTyrMetSerAsnTrpTyrTyrLeuArgGluL : 354 |||||| ||||||||||||!.!|||||||||!!!:!!||||||||||||! !:!!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 355 : ysAspValLeuAspLeuMetLeuIleIleSerArgSerCysValGluThrAsnIleTh : 373 :! :!!|||||||||!!:|||||||||!.!|||||| !:!!! ..!.!.||||| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 374 : rAlaGlyLysIleValHisMetSerPheTyrThrPheThrGlyVal : 388 ||||||||||:!!:!!|||||||||.!!||||||||| !! !||| rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspVal 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTA : 244817 vulgar: gi|805766381|ref|XP_012135246.1| 334 388 . KQ414889.1 244655 244817 + 177 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244817 177 + . gene_id 23 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244817 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244817 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244817 177 + . alignment_id 23 ; Query gi|805766381|ref|XP_012135246.1| ; Align 244656 335 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 169 Query range: 333 -> 389 Target range: 283273 -> 283441 334 : GluGlnCysAsnLysValGlyGluAlaValTyrMetSerAsnTrpTyrTyrLeuArgG : 353 ..!||||||!!.||||||||||||!.!|||||||||!!!|||! !!:!||||||! !! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 354 : luLysAspValLeuAspLeuMetLeuIleIleSerArgSerCysValGluThrAsnIl : 372 !:||||||:!!|||:!!|||:!:|||||||||||||||||| !!::: ...|| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 373 : eThrAlaGlyLysIleValHisMetSerPheTyrThrPheThrGlyValArg : 389 |||||||...|||::::::...|||||| ||||||||| !! !|||||| eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspValArg 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTACGT : 283441 vulgar: gi|805766381|ref|XP_012135246.1| 333 389 . KQ414889.1 283273 283441 + 169 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283441 169 + . gene_id 24 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283441 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283441 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283441 169 + . alignment_id 24 ; Query gi|805766381|ref|XP_012135246.1| ; Align 283274 334 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 263 -> 335 Target range: 210492 -> 210774 264 : PheSerPheIleSerHisIleGluAlaIleMetAsnGluIleCysPheMetGluLeuP : 283 ||||||||||||:!!! ! !||| !:!!:!!:!!||||||! !!.!!:|||:!! PheSerPheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGluMetV 210493 : TTCAGTTTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAATGG : 210550 284 : heLysCysThrPheSerIleCysLeuLeuGlyTyrTyrIleLeuMet >>>> Targ : 299 ! !||||||.!.!:!!!:|||!!!||||||||||||! :!!!!: alGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210551 : TGGGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt......... : 210600 300 : et Intron 1 >>>> GluTrpAlaGlnGlnAspPheArgThrMetThrGlyTyrI : 312 66 bp ||||||! !...:!!||| !! !!:!! ! !|||| ++GluTrpAspSerLysAspProIleSerSerLeuThrTyrI 210601 : ................agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACA : 210703 313 : leSerValPheSerSerMetThrPheAsnIlePheMetLeuCysPheIleGlyGluTh : 331 || !:!!.!!!!!|||:!:|||||||||||||||!!:!!!|||!:!|||||||||.. leValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluVa 210704 : TAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGT : 210760 332 : rIleLysGluGln : 335 !:!: |||||| lLeuAlaGluGln 210761 : GTTGGCTGAACAg : 210774 vulgar: gi|805766381|ref|XP_012135246.1| 263 335 . KQ414889.1 210492 210774 + 166 M 35 105 5 0 2 I 0 62 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210493 210774 166 + . gene_id 25 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 210493 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210493 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210493 210774 166 + . alignment_id 25 ; Query gi|805766381|ref|XP_012135246.1| ; Align 210493 264 105 ; Align 210664 299 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 265 -> 335 Target range: 224140 -> 224434 266 : PheIleSerHisIleGluAlaIleMetAsnGluIleCysPheMetGluLeuPheLysC : 285 |||:!!!!!|||! !||| ! !:!!.!.:!!:!!! |||:!!|||!!!.!. | PheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValGluPheLeuGlyC 224141 : TTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGGAATTTCTAGGCT : 224198 286 : ysThrPheSerIleCysLeuLeuGlyTyrTyrIleLeuMet >>>> Target Int : 299 ||! !!!.!:!|||||||||||||||||||||:!!:!!:!! 84 bp ysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleVal++ 224199 : GCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTGgt............... : 224242 300 : ron 1 >>>> GluTrpAlaGlnGlnAspPheArgThrMetThrGlyTyrIleSerV : 314 ||||||:::...... !!!!.! !!:! !..! !|||.!!! !: ++GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleL 224243 : ..........aggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATAC : 224369 315 : alPheSerSerMetThrPheAsnIlePheMetLeuCysPheIleGlyGluThrIleLy : 333 !!.!!! !|||:::|||||||||||||||:::...|||:::||||||||| !:!! euLeuMetSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAl 224370 : TACTCATGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGC : 224426 334 : sGluGln : 335 |||||| aGluGln 224427 : TGAAcag : 224434 vulgar: gi|805766381|ref|XP_012135246.1| 265 335 . KQ414889.1 224140 224434 + 159 M 33 99 5 0 2 I 0 80 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224141 224434 159 + . gene_id 26 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224141 224239 . + . KQ414889.1 exonerate:protein2genome:local exon 224141 224239 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224240 224241 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224240 224323 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224322 224323 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224141 224434 159 + . alignment_id 26 ; Query gi|805766381|ref|XP_012135246.1| ; Align 224141 266 99 ; Align 224324 299 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 18 -> 143 Target range: 303196 -> 303565 19 : TyrSerLeuGlnLeuAsnArgTrpMetLeuLysAlaIleGlyAlaTrpProLysSerH : 38 ||| ! !:!!! !!:!!:!|||!!:||||||:!!:!!||| !|||||| ! TyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTrpProAlaValL 303197 : TACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTGGCCAGCCGTGT : 303254 39 : isSerThrLysPheGluLysIleValSerIleLeuLeuIleIleThrCysTyrPhePh : 57 ..! !! ! ! :!! !!.!||| !:!! !:!!!:! !!!!. ! euAspGluThrAlaGlyPheLeuProLysIleThrIleGlyLeuSer---AsnLeuVa 303255 : TGGACGAAACCGCAGGATTCCTACCAAAAATCACCATTGGACTCAGT---AATTTGGT : 303308 58 : eValLeuIleThrValLeuProCysIleLeuHisLeuIlePheGluAspAspAspLeu : 76 !:!!|||.!!||||||:!!|||||||||||||||:!!|||||||||.!. ! ||| ! lLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnLysAspThr 303309 : TCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAAAGGATACG : 303365 77 : ArgThrLysValIleIleLeuGlyProLeuSerHisTrpPheLeuGlyGlyValGlyT : 96 ! !! !!:!:!!! !:!!!!!|||! !|||||| !!! !!.:!!..! !:!! !| IleIleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLeuMetLysT 303366 : ATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTTGATGAAGT : 303425 97 : yrThrThrLeuLeuValHisAsnLysGluIleLysTrpCysValAspGlnValLysSe : 115 || !.!!||| !..!!..!!. !..!|||||| |||:!!!!::!!|||:!!|| yrTrpAlaLeuAlaThrArgLysProArgIleLysGluCysIleGluGluValGlnSe 303426 : ATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAGGTGCAAAG : 303482 116 : rAspTrpArgAsnAlaThrArgProGluValGlnGlnLeuMetLeuLysAspAlaLys : 134 |||||||!:!.!.!.!!:! ! :!!!!.::::::::::::|||::: rAspTrpLysGluValSer---ValCysIleHisArgValLeuIleLysAsnArgThr 303483 : TGATTGGAAAGAGGTGAGT---GTTTGCATTCATAgagtattaattaaaaatcgaact : 303536 135 : PheGlyArgTyrValValAlaPheCys : 143 !!..! !||| !||||||! ||| ValSerLeuTyrTyrValAla***Cys 303537 : GTTTCATTATATTATGTAGCATAATGC : 303565 vulgar: gi|805766381|ref|XP_012135246.1| 18 143 . KQ414889.1 303196 303565 + 155 M 35 105 G 1 0 M 67 201 G 1 0 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303197 303565 155 + . gene_id 27 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 303197 303565 . + . KQ414889.1 exonerate:protein2genome:local exon 303197 303565 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 303197 303565 155 + . alignment_id 27 ; Query gi|805766381|ref|XP_012135246.1| ; Align 303197 19 105 ; Align 303302 55 201 ; Align 303503 123 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 262 -> 335 Target range: 304930 -> 305211 263 : IlePheSerPheIleSerHisIleGluAlaIleMetAsnGluIleCysPheMetGluL : 282 |||!:!!!!||| :!! :!::!!.!!:!::!!.!.|||:!!||||||:!!|||! IleTyrArgPheSerAlaIleValGlnThrValLeuGlnGluValCysPheLeuGluP 304931 : ATTTATAGATTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTTCTTGGAAT : 304988 283 : euPheLysCysThrPheSerIleCysLeuLeuGlyTyrTyrIleLeuMet >>>> T : 299 !!.!! ! !|||!!. !||||||||||||! !|||||| !:!!! ! heIleGlySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysIleThr++ 304989 : TCATTGGTTCTACCTTACTGATATGTCTACTTGAATACTACTGTATAACGgt...... : 305041 300 : arget Intron 1 >>>> GluTrpAlaGlnGlnAspPheArgThrMetThrGlyT : 311 62 bp !!:|||! !......:!! ! !!:!:!:||| !| ++AspTrpGluSerSerAsnThrValSerLeuThrThrT 305042 : ...................agGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACAT : 305137 312 : yrIleSerValPheSerSerMetThrPheAsnIlePheMetLeuCysPheIleGlyGl : 330 ||! ! !:!!.!.! !|||:!:|||||||||||||||!!:||||||!:!|||||||| yrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGl 305138 : ATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGA : 305194 331 : uThrIleLysGluGln : 335 |! !:!!! !|||:!! uIleLeuMetGluLys 305195 : GATTCTTATGGAAAAG : 305211 vulgar: gi|805766381|ref|XP_012135246.1| 262 335 . KQ414889.1 304930 305211 + 153 M 36 108 5 0 2 I 0 58 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304931 305211 153 + . gene_id 28 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 304931 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304931 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 0 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304931 305211 153 + . alignment_id 28 ; Query gi|805766381|ref|XP_012135246.1| ; Align 304931 263 108 ; Align 305101 299 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 264 -> 297 Target range: 263671 -> 263770 265 : SerPheIleSerHisIleGluAlaIleMetAsnGluIleCysPheMetGluLeuPheL : 284 |||||||||..!!.!|||:!! !:!:|||!:! !|||||||||:!!|||||||||| SerPheIleAspArgIleLysAsnValMetSerThrIleCysPheValGluLeuPheL 263672 : AGTTTCATAGATCGTATTAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCA : 263729 285 : ysCysThrPheSerIleCysLeuLeuGlyTyrTyrIleLeu : 297 ||..!|||.!...!||||||:!!|||||||||||||||||| ysAlaThrLeuAspIleCysMetLeuGlyTyrTyrIleLeu 263730 : AGGCTACGCTGGATATATGCATGCTAGGTTACTACATACTT : 263770 vulgar: gi|805766381|ref|XP_012135246.1| 264 297 . KQ414889.1 263671 263770 + 117 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 263672 263770 117 + . gene_id 29 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 263672 263770 . + . KQ414889.1 exonerate:protein2genome:local exon 263672 263770 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 263672 263770 117 + . alignment_id 29 ; Query gi|805766381|ref|XP_012135246.1| ; Align 263672 265 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 972 Query range: 0 -> 327 Target range: 259844 -> 262015 1 : MetGluLysIleAlaSerLeuIleLeuIlePheValCysGlnCysCysIleLeuIleT : 20 :!:||||||||| !|||:!!||||||||||||:!!||| ! !! !||||||:!!| LeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIleLeuValT 259845 : CTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATACTGGTCA : 259902 21 : hrValLeuProCysIleLeuTyrIleValLeuAspAspAspAspIleAlaGluLysLe : 39 ||:!!:!!||||||:!!|||:!!!!::!!|||!!: ! !!:..!:!: ! !||| hrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrMetLysTh 259903 : CCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAAC : 259959 40 : uMetValValGlyProLeuSerHisTrpPheValGlyGlyCysAsnTyrThrThrLeu : 58 !! !|||:!!|||||||||!!!||||||||||||||| !! !||||||||||||||| rLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrThrThrLeu 259960 : GAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTTG : 260016 59 : LeuLeuHisSerLysGluIleArgPheCysAlaGlnGlnMetLysSerAspTrpMetT : 78 ||||||....!!!:!!!:|||! ! !|||!.!:!!!!.:!!:!!!:!||||||! ! LeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAspTrpArgI 260017 : TTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGAA : 260076 79 : hrValThrArgLeuLysAspLeuGlnValMetLeuLysTyrSerLysLeuGlyArgTy : 97 !:!!|||||| !||||||! !.!.|||||||||!:!|||:!!|||!!!|||||||| leIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgTy 260077 : TTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGATA : 260133 98 : rValValValPheCysAlaAlaPheMetGlnGlyGlyValLeuCysPheCysAlaLeu : 116 ||||!.!!.!! !||||||||||||:!!|||||||||||||||||||||||| !:!! rValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCysLeuVal 260134 : CGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTC : 260190 117 : ArgAlaPheThrValGluThrValLeuIleGlyAsnAspThrLysAsnValHisLeuV : 136 ! !!.!!!.!:!..!|||..!:!!! !:!:||||||!!:|||!:!! !|||||||||: ThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleValHisLeuL 260191 : ACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTGT : 260250 137 : alProCysThrProSerLysLysValIleSerPheAspThrSerProThrAsnGluIl : 155 !!||||||.!! !! !|||:!!:!!|||!:! ! :!! !||||||! !|||||||| euProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetAsnGluIl 260251 : TGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGAT : 260307 156 : ePheIleAlaLeuGlnPheLeuSerGlyPheIleValAsnSerThrAlaAlaGlyAla : 174 | !!:!!!.!:!!||||||:!!|||||||||||||||||||||!:!.!!!.!||| ! eValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrValGlyIle 260308 : TGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAATC : 260364 175 : PheSerPheAlaAlaValSerAlaAlaHisAlaTyrGlyGlnLeuAsnValLeuThrA : 194 ||||||.!!||||||||| !.!!|||||||||! !||||||||||||||||||! !! PheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMetG 260365 : TTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGG : 260424 195 : spTrpIleLysGluLeuLeuAsnArgThrGlyLysPheAspArgLysIleAspSerAs : 213 !:||||||! !|||!!!:!!:!!..!:!! !!!!. ! !:!||| ! !! !!! luTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaProPheLy 260425 : AATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTCCTTTCAA : 260481 214 : nLysIleGlyIleIleValAsnAsnHisLeuArgIleLeu{Th} >>>> Target : 227 .:!!||||||:!:||||||.!.:!!||||||||| !|||{||} 25 sGluIleGlyValIleValGluHisHisLeuArgAlaLeu{Th}++ 260482 : GGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC{AC}gt............ : 260527 228 : Intron 1 >>>> {r}PheIleAlaAsnIleGluAspIleMetAsnLysIleCysL : 241 7 bp {|}||||||:!!..!|||||||||:!:||||||::!||||||! ++{r}PheIleSerArgIleGluAspValMetAsnArgIleCysP 260528 : .............ag{C}TTCATATCGCGTATCGAGGATGTGATGAACCGGATATGCT : 260822 242 : euMetGluLeuPheLysCysThrValCysIleCysThrLeuGluTyrHisIleLeuMe : 260 !!:!!|||||||||!:!||||||:!! !|||||| !|||! |||:!!|||||||| heLeuGluLeuPheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeuMe 260823 : TCCTGGAGTTGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATATTCTTAT : 260879 261 : t >>>> Target Intron 2 >>>> GluTrpAlaAsnHisAspTyrGlnSerV : 270 | 852 bp |||||||||.!.!!.||| |||!:!: t++ ++GluTrpAlaGluGlnAspIleGlnAsnL 260880 : Ggt.........................agGAATGGGCTGAGCAAGATATACAAAATC : 261761 271 : alThrSerPhePheLeuValLeuCysSerMetSerPheAsnMetPheIleValCysTy : 289 !!:!!!!!!:!|||:!!:!!||| :!!!!:!!!||||||:!:||||||:!!||||| euSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheIleIleCysTy 261762 : TGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTA : 261818 290 : rIleGlyGluLysLeuSerGluGln >>>> Target Intron 3 >>>> CysL : 299 ||||||||||! !|||!!!|||||| 81 bp |||. rIleGlyGluIleLeuThrGluGln++ ++CysS 261819 : CATCGGTGAAATACTAACGGAACAGgt.........................agTGCT : 261929 300 : ysSerIleGlyGluThrValTyrMetThrAsnTrpTyrTyrLeuProAsnLysAspIl : 318 .!!.!:!!|||!!:..!||||||||||||||||||||||||||||||:!!|||..!|| erLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuProAspLysSerIl 261930 : CGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACCTGATAAAAGTAT : 261986 319 : eLeuAspLeuIleMetIleIleSerArg : 327 |||||||||||||:!!||||||:!!||| eLeuAspLeuIleLeuIleIleAlaArg 261987 : CCTTGATTTGATTTTGATCATTGCACGA : 262015 vulgar: gi|805766378|ref|XP_012135245.1| 0 327 . KQ414889.1 259844 262015 + 972 M 226 678 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259845 262015 972 + . gene_id 1 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259845 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259845 260524 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262015 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262015 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259845 262015 972 + . alignment_id 1 ; Query gi|805766378|ref|XP_012135245.1| ; Align 259845 1 678 ; Align 260783 228 99 ; Align 261734 261 111 ; Align 261926 298 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 962 Query range: 0 -> 363 Target range: 256724 -> 258732 1 : MetGluLysIleAlaSerLeuIleLeuIlePheValCysGlnCysCysIleLeuIleT : 20 :!:|||::!! !!.!|||:!!:!!|||! !.!!|||||| ! !!! !||||||.!!| LeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIleLeuPheT 256725 : CTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTCA : 256782 21 : hrValLeuProCysIleLeuTyrIleValLeuAspAspAspAspIleAlaGluLysLe : 39 ||:!!:!!||||||:!:|||:!!:!! !!||||||||||||..!.!! |||:: hrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrMetLysVa 256783 : CCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAcatgaaagt : 256839 40 : uMetValValGlyProLeuSerHisTrpPheValGlyGlyCysAsnTyrThrThrLeu : 58 : ||||||:!!|||||||||.!!:!!.!! !!..!||||||||| !||| lLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrThrLeuLeu 256840 : gaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACACGTTGCTG : 256896 59 : LeuLeuHisSerLysGluIleArgPheCysAlaGlnGlnMetLysSerAspTrpMetT : 78 ||||||!!..!!|||!!:||||||!:!|||!.!:!!!!.!!::!!!!!||||||! ! LeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAspTrpArgM 256897 : TTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGAA : 256956 79 : hrValThrArgLeuLysAspLeuGlnValMetLeuLysTyrSerLysLeuGlyArgTy : 97 !|||! !||| !||||||! !|||||||||:!!||| !!:!!!:!!!!|||||||| etValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheGlyArgTy 256957 : TGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTTA : 257013 98 : rValValValPheCysAlaAlaPheMetGlnGlyGlyValLeuCysPheCysAlaLeu : 116 ||||!.!..!||||||||||||.!!||||||.!!||||||...|||||| ..!! ! rValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePheValSer 257014 : CGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttcttcgtGTCG : 257070 117 : ArgAlaPheThrValGluThrValLeuIleGlyAsnAspThrLysAsnValHisLeuV : 136 !|||.!.!.!..!|||! !:!!! !:!:||||||!!:|||! !! !|||!..:!!: SerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleValArgValL 257071 : TCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTGCGAGTGC : 257130 137 : alProCysThrProSerLysLysValIleSerPheAspThrSerProThrAsnGluIl : 155 !!||| !||| !! !||||||:!!:!:!:! !!||| !||||||||||||||||| euProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrAsnGluIl 257131 : TACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGAT : 257187 156 : ePheIleAlaLeuGlnPheLeuSerGlyPheIleValAsnSerThrAlaAlaGlyAla : 174 | ! :!! !:!!||| !! !|||..!.!!|||!.!!.!!!!!:!.!!!.!.!! ! eValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrValSerIle 257188 : CGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAGTATA : 257244 175 : PheSerPheAlaAlaValSerAlaAlaHisAlaTyrGlyGlnLeuAsnValLeuThrA : 194 ||||||.!!|||||||||! !|||.!!||||||||||||||||||!.!||||||! !. PheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrValLeuMetS 257245 : TTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATGT : 257304 195 : spTrpIleLysGluLeuLeuAsnArgThrGlyLysPheAspArgLysIleAspSerAs : 213 ..||||||! !|||!!!:!!|||..!:!! !!!!. :::::: ... !!! erTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheProPheLy 257305 : CGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttcctttCAA : 257361 214 : nLysIleGlyIleIleValAsnAsnHisLeuArgIleLeu{Th} >>>> Target : 227 .:!!||||||:!:||||||.!.:!!|||||||||:!:|||{!:} 76 sGlnIleGlyValIleValGluHisHisLeuArgValLeu{Se}++ 257362 : GCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt............ : 257407 228 : Intron 1 >>>> {r}PheIleAlaAsnIleGluAspIleMetAsnLysIleCysL : 241 bp {!}||||||:!! !!||||||!!::!:||||||::!||||||! ++{r}PheIleSerTyrIleGluGluValMetAsnArgIleCysP 257408 : .............ag{T}TTCATATCATATATCGAGGAAGTGATGAACCGAATATGTT : 257521 242 : euMetGluLeuPheLysCysThrValCysIleCysThrLeuGluTyrHisIleLeuMe : 260 !!:!:|||||||||!:!||||||:!!..!||||||! !|||! !|||:!!|||||| heLeuGluLeuPheArgCysThrLeuAlaIleCysMetLeuGlyTyrTyrIleLeuAl 257522 : TTTTAGAGTTGTTTAGATGCACGCTGGCTATATGCATGCTGGGATACTACATTCTTGC : 257578 261 : t >>>> Target Intron 2 >>>> GluTrpAlaAsnHisAspTyrGlnSerV : 270 ! 684 bp ||||||:!!!..!..||| |||:::: a++ ++GluTrpSerThrGlnAspIleGlnAsnL 257579 : Ggt.........................aggaATGGTCTACGCaagatattcaaaatt : 258292 271 : alThrSerPhePheLeuValLeuCysSerMetSerPheAsnMetPheIleValCysTy : 289 :::::|||::!|||:!!:!!||| |||:::|||||||||:::|||::::::||||| euSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValIleCysTy 258293 : tgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaatatgttA : 258349 290 : rIleGlyGluLysLeuSerGluGln >>>> Target Intron 3 >>>> CysL : 299 ||||||||||! !|||!!!|||||| 90 bp |||| rIleGlyGluIleLeuThrGluGln++ ++CysL 258350 : CATAGGTGAAATATTAACAGAACAGgt.........................agTGCA : 258469 300 : ysSerIleGlyGluThrValTyrMetThrAsnTrpTyrTyrLeuProAsnLysAspIl : 318 ||!.!:!!|||!!:..!||||||||||||:!!|||||||||||||||:!!||| || ysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIl 258470 : AGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAAT : 258526 319 : eLeuAspLeuIleMetIleIleSerArgSerHisMetMetThrLysIleThrAlaGly : 337 |||||||||||||:!!:!!|||:!!|||||| !:!!:!:..!:!!|||||||||||| eLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleThrAlaGly 258527 : ACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGgga : 258583 338 : LysValValProMetSerPheAspThrPheAlaSer >>>> Target Intron 4 : 350 ||| ||||||.!! !!||||||::!..! 69 bp LysPhePheHisMetSerIleTyrThrPheSerAsp++ 258584 : aaattctttcacatGTCCATTTACACATTCAGCGATgt.................... : 258624 351 : >>>> ValIleLysThrGlyPheAlaTyrLeuAsnValLeuArgGln : 363 ||||||||||||..!|||||||||||||||:!!||||||||| ++ValIleLysThrSerPheAlaTyrLeuAsnLeuLeuArgGln 258625 : .....agGTAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAA : 258732 vulgar: gi|805766378|ref|XP_012135245.1| 0 363 . KQ414889.1 256724 258732 + 962 M 226 678 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256725 258732 962 + . gene_id 2 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256725 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256725 257404 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258732 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258732 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256725 258732 962 + . alignment_id 2 ; Query gi|805766378|ref|XP_012135245.1| ; Align 256725 1 678 ; Align 257482 228 99 ; Align 258265 261 111 ; Align 258466 298 156 ; Align 258691 350 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 827 Query range: 0 -> 259 Target range: 274455 -> 275306 1 : MetGluLysIleAlaSerLeuIleLeuIlePheValCysGlnCysCysIleLeuIleT : 20 .!.|||::!||| !|||! !:::|||||||||:::||| ! |||! !|||||| !| PheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerT 274456 : TTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCA : 274513 21 : hrValLeuProCysIleLeuTyrIleValLeuAspAspAspAspIleAlaGluLysLe : 39 |||||:!!||| !!|||!!!:!!|||:!!|||! |||!!:..!:!! ! !||||| hrValIleProSerIlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLe 274514 : CCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCT : 274570 40 : uMetValValGlyProLeuSerHisTrpPheValGlyGlyCysAsnTyrThrThrLeu : 58 |! !:!!:!!|||||||||.!!|||||||||:!!|||||| !||||||||||||||| uLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeu 274571 : GAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTG : 274627 59 : LeuLeuHisSerLysGluIleArgPheCysAlaGlnGlnMetLysSerAspTrpMetT : 78 ||||||!.!||||||||||||||| !|||!.!:!!!!.|||:!!!!!||||||! !! LeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgI 274628 : TTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGA : 274687 79 : hrValThrArgLeuLysAspLeuGlnValMetLeuLysTyrSerLysLeuGlyArgTy : 97 !|||||||||! !:!!|||! !||||||||||||||| !!:!!|||:!!|||||||| leValThrArgProGluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTy 274688 : TCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTA : 274744 98 : rValValValPheCysAlaAlaPheMetGlnGlyGlyValLeuCysPheCysAlaLeu : 116 ||||!.!:!!||||||||||||||||||||| !!||||||||||||!:!|||!.!:!! rValAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIle 274745 : CGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATA : 274801 117 : ArgAlaPheThrValGluThrValLeuIleGlyAsnAspThrLysAsnValHisLeuV : 136 ! !|||||||||:!!:!!||||||! !:!!||||||!!:|||!:!!.!||||||:!!: ThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrArgThrValHisMetL 274802 : ACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGT : 274861 137 : alProCysThrProSerLysLysValIleSerPheAspThrSerProThrAsnGluIl : 155 !!||||||! ! !!! !||||||:!!:!!:!! ! ||||||||||||||||||||||| euProCysLysAlaTyrLysLysIleValAlaValAspThrSerProThrAsnGluIl 274862 : TGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGAT : 274918 156 : ePheIleAlaLeuGlnPheLeuSerGlyPheIleValAsnSerThrAlaAlaGlyAla : 174 | !!:!!|||! !||||||:!!|||||||||||||||||||||!:!|||!.!|||||| eValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerSerAlaValGlyAla 274919 : CGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCA : 274975 175 : PheSerPheAlaAlaValSerAlaAlaHisAlaTyrGlyGlnLeuAsnValLeuThrA : 194 ||||||.!!|||||||||! !||||||||||||||||||||||||!:!||||||! ! PheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetI 274976 : TTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGA : 275035 195 : spTrpIleLysGluLeuLeuAsnArgThrGlyLysPheAspArgLysIleAspSerAs : 213 ||||||! |||!!!:!!|||!.!:!! !! ! ::::::...::: :: leTrpIleThrGluPheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSe 275036 : TATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttcag : 275092 214 : nLysIleGlyIleIleValAsnAsnHisLeuArgIleLeu{Th} >>>> Target : 227 !:!!||||||:!::!!|||.!.:!!|||||||||:!!|||{!:} 74 rGluIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 275093 : CGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTC{AG}gt............ : 275138 228 : Intron 1 >>>> {r}PheIleAlaAsnIleGluAspIleMetAsnLysIleCysL : 241 bp {!}|||||||||..!|||||||||:!:||||||::!||||||! ++{r}PheIleAlaArgIleGluAspValMetAsnArgIleCysP 275139 : .............ag{T}TTCATAGCACGTATCGAGGATGTGATGAATCGAATATGCT : 275250 242 : euMetGluLeuPheLysCysThrValCysIleCysThrLeuGluTyrHisIleLeu : 259 !!|||||||||||||||||||||:!! !!!:|||! !|||! |||:!!|||||| heMetGluLeuPheLysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleLeu 275251 : TCATGGAATTGTTCAAGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTCTC : 275306 vulgar: gi|805766378|ref|XP_012135245.1| 0 259 . KQ414889.1 274455 275306 + 827 M 226 678 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274456 275306 827 + . gene_id 3 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274456 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274456 275135 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274456 275306 827 + . alignment_id 3 ; Query gi|805766378|ref|XP_012135245.1| ; Align 274456 1 678 ; Align 275211 228 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 822 Query range: 0 -> 259 Target range: 266709 -> 267555 1 : MetGluLysIleAlaSerLeuIleLeuIlePheValCysGlnCysCysIleLeuIleT : 20 :!:|||::!|||!.!|||! ! !|||||| !!:!!||| ! |||! !||||||.!!| LeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIleLeuPheT 266710 : CTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATACTGTTCA : 266767 21 : hrValLeuProCysIleLeuTyrIleValLeuAspAspAspAspIleAlaGluLysLe : 39 |||||:!!||||||:!:!!!:!!:!!||||||!!:|||!!:..!||| ! !|||:! hrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgThrLysVa 266768 : CCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTACGAAAGT : 266824 40 : uMetValValGlyProLeuSerHisTrpPheValGlyGlyCysAsnTyrThrThrLeu : 58 !! !||| !!|||||||||||||||||||||||||||||| !||||||||||||||| lLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrThrThrLeu 266825 : GAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACACCACACTG : 266881 59 : LeuLeuHisSerLysGluIleArgPheCysAlaGlnGlnMetLysSerAspTrpMetT : 78 ||||||!.!||||||||||||||| !|||!.!:!!!!.|||:!!!!!||||||! !! LeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgI 266882 : TTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGATTGGAGGA : 266941 79 : hrValThrArgLeuLysAspLeuGlnValMetLeuLysTyrSerLysLeuGlyArgTy : 97 !|||||||||! !:!!||| !||||||||||||||| !!:!!!:!:!!|||||||| leValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleGlyArgTy 266942 : TCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCGGTCGTTA : 266998 98 : rValValValPheCysAlaAlaPheMetGlnGlyGlyValLeuCysPheCysAlaLeu : 116 |:!!!.!:!!||||||||||||||||||||| !!||||||||| !!!:!|||!.!:!! rIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCysValIle 266999 : CATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGTGATA : 267055 117 : ArgAlaPheThrValGluThrValLeuIleGlyAsnAspThrLysAsnValHisLeuV : 136 ! !|||||||||:!!:!!|||||| !:!!||||||!!:|||!:!! !|||||||||: ThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleValHisLeuL 267056 : ACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTACATCTGT : 267115 137 : alProCysThrProSerLysLysValIleSerPheAspThrSerProThrAsnGluIl : 155 !!||||||.!! !! !||||||:!!|||:!! !!||||||||||||||||||||||| euProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrAsnGluIl 267116 : TGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGAACGAGAT : 267172 156 : ePheIleAlaLeuGlnPheLeuSerGlyPheIleValAsnSerThrAlaAlaGlyAla : 174 | !!:!!!.!! !||||||:!!|||||||||||||||||||||!:!!.!!.!|||||| eValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValValGlyAla 267173 : TGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCGGTGCT : 267229 175 : PheSerPheAlaAlaValSerAlaAlaHisAlaTyrGlyGlnLeuAsnValLeuThrA : 194 ||||||.!!|||||||||! !||||||||||||! !|||||||||!:!||||||! ! PheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerValLeuMetM 267230 : TTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTGATGA : 267289 195 : spTrpIleLysGluLeuLeuAsnArgThrGlyLysPheAspArgLysIleAspSerAs : 213 ||||||||||||!!!:!!||||||:!! !! ! !:!!!:!!!.:!! !! !:! etTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValCysPheAs 267290 : TGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTTGCTTCGA : 267346 214 : nLysIleGlyIleIleValAsnAsnHisLeuArgIleLeu{Th} >>>> Target : 227 !|||||||||:!::!!|||.!.:!!|||||||||:!!|||{!:} 69 pLysIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 267347 : TAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG}gt............ : 267392 228 : Intron 1 >>>> {r}PheIleAlaAsnIleGluAspIleMetAsnLysIleCysL : 241 bp {!}|||||||||..!||||||..!:!!|||!:!:!!||||||! ++{r}PheIleAlaArgIleGluSerValMetSerGluIleCysP 267393 : .............ag{C}TTCATAGCACGTATCGAAAGTGTAATGAGCGAAATTTGCT : 267499 242 : euMetGluLeuPheLysCysThrValCysIleCysThrLeuGluTyrHisIleLeu : 259 !!|||||||||||||||||||||:!! !||||||..!|||...|||:!!|||||| heMetGluLeuPheLysCysThrMetAspIleCysValLeuSerTyrTyrIleLeu 267500 : TCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCTATTATATCCTT : 267555 vulgar: gi|805766378|ref|XP_012135245.1| 0 259 . KQ414889.1 266709 267555 + 822 M 226 678 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266710 267555 822 + . gene_id 4 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266710 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266710 267389 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267555 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266710 267555 822 + . alignment_id 4 ; Query gi|805766378|ref|XP_012135245.1| ; Align 266710 1 678 ; Align 267460 228 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 614 Query range: 0 -> 226 Target range: 262921 -> 263599 1 : MetGluLysIleAlaSerLeuIleLeuIlePheValCysGlnCysCysIleLeuIleT : 20 ||||||::!||| !!!!!!!:!!|||||| !!|||||| ! ||| !|||||| !| MetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCysLeuIleLeuSerT 262922 : ATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCA : 262979 21 : hrValLeuProCysIleLeuTyrIleValLeuAspAspAspAspIleAlaGluLysLe : 39 |||||:!!|||! !||||||:!!|||||||||!!:! !!!::!!.!! ! !||||| hrValIleProSerIleLeuHisIleValLeuGluAlaGluAsnPheHisMetLysLe 262980 : CCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCT : 263036 40 : uMetValValGlyProLeuSerHisTrpPheValGlyGlyCysAsnTyrThrThrLeu : 58 |..!|||:!!|||||||||.!!!!.|||||||||||| ! !||||||||| !||| uGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeu 263037 : GCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTG : 263093 59 : LeuLeuHisSerLysGluIleArgPheCysAlaGlnGlnMetLysSerAspTrpMetT : 78 |||||||||||||||!!:|||!:! !|||!.!|||!!.:!!:!!..!|||||| ! LeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGlnGluAspTrpCysI 263094 : TTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTA : 263153 79 : hrValThrArgLeuLysAspLeuGlnValMetLeuLysTyrSerLysLeuGlyArgTy : 97 !||||||||||||:!!|||! !!:::!!||||||||| !!:!!|||! !|||||||| leValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTy 263154 : TCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTA : 263210 98 : rValValValPheCysAlaAlaPheMetGlnGlyGlyValLeuCysPheCysAlaLeu : 116 ||||!.!!.!! !|||||| !||||||||| !.!!:!!:!!||| ||| !:!! rValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetCysLysCysLeuVal 263211 : CGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTC : 263267 117 : ArgAlaPheThrValGluThrValLeuIleGlyAsnAspThrLysAsnValHisLeuV : 136 ! !|||||||||..!:!!..!:!! ! !||||||!!:|||!:!! !:!!!.!:!!: ThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrArgIleLeuArgMetL 263268 : ACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAGAATTCTACGTATGC : 263327 137 : alProCysThrProSerLysLysValIleSerPheAspThrSerProThrAsnGluIl : 155 !!|||||| !! !! !|||:!!:!!||| !! !!||||||!:!|||||||||||||| euProCysProValTyrLysGluIleIleProValAspThrAsnProThrAsnGluIl 263328 : TACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAATCCGACGAACGAGAT : 263384 156 : ePheIleAlaLeuGlnPheLeuSerGlyPheIleValAsnSerThrAlaAlaGlyAla : 174 ||||:!!||| !||||||||||||||||||||||||!.!:!!|||.!!!.!|||||| ePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaThrThrValGlyAla 263385 : CTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCT : 263441 175 : PheSerPheAlaAlaValSerAlaAlaHisAlaTyrGlyGlnLeuAsnValLeuThrA : 194 |||.!!.!..!!||||||! !|||!.!||||||! !||||||||||||||||||! !. PheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetS 263442 : TTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGT : 263501 195 : spTrpIleLysGluLeuLeuAsnArgThrGlyLysPheAspArgLysIleAspSerAs : 213 .!||||||! !|||!!!:!!|||!:!:!! !! ! :!!!:!!!.:!! !!! !!. erTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLysAsnLeuTyrPheTh 263502 : CCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTAC : 263558 214 : nLysIleGlyIleIleValAsnAsnHisLeuArgIleLeu : 226 !:!!||||||:!:||||||.!.:!!|||||||||:!!||| rGluIleGlyValIleValGluHisHisLeuArgValLeu 263559 : CGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTG : 263599 vulgar: gi|805766378|ref|XP_012135245.1| 0 226 . KQ414889.1 262921 263599 + 614 M 226 678 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262922 263599 614 + . gene_id 5 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262922 263599 . + . KQ414889.1 exonerate:protein2genome:local exon 262922 263599 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262922 263599 614 + . alignment_id 5 ; Query gi|805766378|ref|XP_012135245.1| ; Align 262922 1 678 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 487 Query range: 1 -> 259 Target range: 232534 -> 234620 2 : GluLysIleAlaSerLeuIleLeuIlePheValCysGlnCysCysIleLeuIleThrV : 21 :!!:!!:!! !:!! !:!:|||! !.!!..!|||!!.! ! !!::!! !:!!: GlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHisSerLeuMetIleSerSerI 232535 : CAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGA : 232592 22 : alLeuProCysIleLeuTyrIleValLeuAspAspAspAspIleAlaGluLysLeuMe : 40 !!:!!||||||||||||!:!|||:!!!!!!!:||| ..!:!!! !|||!:!:!!! leValProCysIleLeuPheIleLeuPheGluAspThrSerLeuGluGluArgMetLy 232593 : TCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAA : 232649 41 : tValValGlyProLeuSerHisTrpPheValGlyGlyCysAsnTyrThrThrLeuLeu : 59 ! !:!!||||||:!!||||||!::.!.:!!|||! !! |||||| ! !|||||| sSerIleGlyProMetSerHisPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeu 232650 : GTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTG : 232706 60 : LeuHisSerLysGluIleArgPheCysAlaGlnGlnMetLysSerAspTrpMetThrV : 79 ! ! :!!!!.!!:|||! !!:!|||!.!:!!|||:!!|||..!|||||| !.!| AlaLysAlaAsnAspIleLeuTyrCysValGluGlnValLysGlnAspTrpArgAsnV 232707 : GCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACG : 232766 80 : alThrArgLeuLysAspLeuGlnValMetLeuLysTyrSerLysLeuGlyArgTyrVa : 98 ||! !!:!! ! !!! !.!.:!!||||||||| !!:!!||||||||||||! :! alLysLysProValHisArgAspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIl 232767 : TTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGAT : 232823 99 : lValValPheCysAlaAlaPheMetGlnGlyGlyValLeuCysPheCysAlaLeuArg : 117 !!.! !.!!..!||| !! !|||!!. !|||||| !! ! ! !:!!! ! eAlaCysIleAlaAlaPheCysMetHisThrGlyValGlySerAspGluIleValThr 232824 : AGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACA : 232880 118 : AlaPheThrValGluThrValLeuIleGlyAsnAspThrLysAsnValHisLeuValP : 137 !.!.!! !:!!...||| !!! !:!:||||||!!:!:! ! ::::!!:!!! !:!!| GlyLeuArgMetSerThrPheTyrValGlyAsnGluSerTyrSerMetTyrProLeuP 232881 : GGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTAC : 232940 138 : roCysThrProSerLysLysValIleSerPheAspThrSerProThrAsnGluIlePh : 156 |||||||| !! !! !|||:!!!!:..! ! !||||||||||||||||||.! roCysThrPheTyrThrLysLeuMetAspThrArgPheSerProThrAsnGluIleMe 232941 : CTTGCACGTTCTACACGAAGCTGATGGACACCAGATTCAGTCCGACGAACGAGATAAT : 232997 157 : eIleAlaLeuGlnPheLeuSerGlyPheIleValAsnSerThrAlaAlaGlyAlaPhe : 175 ..!!!.!||||||! !||||||||||||||||||||||||..!.!!!.!||||||! ! tPheValLeuGlnCysLeuSerGlyPheIleValAsnSerValThrValGlyAlaCys 232998 : GTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGC : 233054 176 : SerPheAlaAlaValSerAlaAlaHisAlaTyrGlyGlnLeuAsnValLeuThrAspT : 195 .!!!!.!.!|||||| !||| !||||||! !|||||||||||||||:!!! !... GlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGlnLeuAsnValValMetSerL 233055 : GGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGA : 233114 196 : rpIleLysGluLeuLeuAsnArgThrGlyLysPheAspArgLysIleAspSerAsnLy : 214 :!: ! !!:|||:!!:!! !! !|||:!! !!:..!!:!:!!! ..!!..|| ysLeuAspAspLeuValAspAlaLysGlyGln---GluGluArgValAlaGlnArgLy 233115 : AATTGGACGATTTGGTGGACGCGAAAGGGCAG---GAGGAGAGAGTCGCGCAGAGGAA : 233168 215 : sIleGlyIleIleValAsnAsnHisLeuArgIleLeu{Th} >>>> Target Int : 227 |:!!|||.!!||||||.!.:!!|||||||||! !|||{!:} 1315 b sLeuGlyPheIleValGluHisHisLeuArgThrLeu{Se}++ 233169 : GTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTA{AG}gt............... : 233211 228 : ron 1 >>>> {r}PheIleAlaAsnIleGluAspIleMetAsnLysIleCysLeuM : 242 p {!}|||||| !|||||||||:!!:!!|||||| !|||||||||: ++{r}PheIleArgAsnIleGluAsnValMetAsnLeuIleCysLeuV 233212 : ..........ag{T}TTTATACGGAATATAGAGAACGTTATGAACCTAATATGCCTGG : 234567 243 : etGluLeuPheLysCysThrValCysIleCysThrLeuGluTyrHisIleLeu : 259 !:|||||| ! !||||||:!! !!!:|||! !|||||||||:!!:!!||| alGluLeuValGlyCysThrLeuAsnMetCysMetLeuGluTyrTyrLeuLeu 234568 : TTGAGTTGGTAGGATGCACGTTGAACATGTGCATGCTCGAGTATTATTTACTC : 234620 vulgar: gi|805766378|ref|XP_012135245.1| 1 259 . KQ414889.1 232534 234620 + 487 M 204 612 G 1 0 M 20 60 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232535 234620 487 + . gene_id 6 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232535 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232535 233208 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234620 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234620 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232535 234620 487 + . alignment_id 6 ; Query gi|805766378|ref|XP_012135245.1| ; Align 232535 2 612 ; Align 233147 207 60 ; Align 234525 228 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 407 Query range: 0 -> 236 Target range: 236918 -> 237626 1 : MetGluLysIleAlaSerLeuIleLeuIlePheValCysGlnCysCysIleLeuIleT : 20 :!:|||!:!! ! !|||! !||||||! ! ! :!!||| ! !...||||||.!!: LeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheS 236919 : CTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCT : 236976 21 : hrValLeuProCysIleLeuTyrIleValLeuAspAspAspAspIleAlaGluLysLe : 39 !!:!!:!!|||||| |||:!!:!!:!!|||!!: ! ! !.!! ! !|||:! erIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysVa 236977 : CGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGT : 237033 40 : uMetValValGlyProLeuSerHisTrpPheValGlyGlyCysAsnTyrThrThrLeu : 58 !! :!!:!!||| !!|||||||||||| ! !! !! ! !!:!||||||! !||| lLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeu 237034 : GAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTG : 237090 59 : LeuLeuHisSerLysGluIleArgPheCysAlaGlnGlnMetLysSerAspTrpMetT : 78 ||||||!.. !!||| |||||| !! ! !.!.!!.|||:!!!!!||||||! | LeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgT 237091 : TTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAA : 237150 79 : hrValThrArgLeuLysAspLeuGlnValMetLeuLysTyrSerLysLeuGlyArgTy : 97 ||..!|||||| ::: :::|||||||||||||||:!!|||!!!.!!||||| hrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTy 237151 : CGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATA : 237207 98 : rValValValPheCysAlaAlaPheMetGlnGlyGlyValLeuCysPheCysAlaLeu : 116 |!.!!.!:!!! !|||.!! !|||!!:!!.||||||:!!||| ! !:!|||!.!:!! rAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMet 237208 : CGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATG : 237264 117 : ArgAlaPheThrValGluThrValLeuIleGlyAsnAspThrLysAsnValHisLeuV : 136 ! !|||! !|||..! !..!|||:!!:!!|||||| ! |||! !! !:!!!.!:!!: ThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLeuArgValL 237265 : ACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGCGTGC : 237324 137 : alProCysThrProSerLysLysValIleSerPheAspThrSerProThrAsnGluIl : 155 !!|||! !! !! !||| !:!!:!! !! !!||||||!:! !!! !|||!!:|| euProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnAspIl 237325 : TGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGACAT : 237381 156 : ePheIleAlaLeuGlnPheLeuSerGlyPheIleValAsnSerThrAlaAlaGlyAla : 174 | !!:!! !! !|||||||||||||||||||||!.!|||!:!!:!||| !.!!!.! eValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSerVal 237382 : CGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAGTGTT : 237438 175 : PheSerPheAlaAlaValSerAlaAlaHisAlaTyrGlyGlnLeuAsnValLeuThrA : 194 .!.|||.!!.!!::!!.! !.!!:!!||||||! !|||||||||!:!|||:!!! ! IleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValValMetL 237439 : ATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTTATGT : 237498 195 : spTrpIleLysGluLeuLeuAsnArgThrGlyLysPheAspArgLysIleAspSerAs : 213 ! !|||:!!!!:!!!:!!!:!..!.!! !!::: ! !:! ! ! !!! !:! euSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAspHisPheAs 237499 : TGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATCATTTCGA : 237555 214 : nLysIleGlyIleIleValAsnAsnHisLeuArgIleLeuThrPheIleAlaAsnIle : 232 !:!!||| !! !||||||.!..!.|||||||||:!:|||! !! :!!..! :!: pGluIleProThrIleValGluGluHisLeuArgValLeuLys***ValCysLeuLeu 237556 : CGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAGTATGTTTGTTG : 237612 233 : GluAspIleMet : 236 !!: |||:!! AspLeuIleLeu 237613 : GATTTGATTTTG : 237626 vulgar: gi|805766378|ref|XP_012135245.1| 0 236 . KQ414889.1 236918 237626 + 407 M 236 708 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236919 237626 407 + . gene_id 7 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236919 237626 . + . KQ414889.1 exonerate:protein2genome:local exon 236919 237626 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 236919 237626 407 + . alignment_id 7 ; Query gi|805766378|ref|XP_012135245.1| ; Align 236919 1 708 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 366 Query range: 0 -> 360 Target range: 284595 -> 287252 1 : MetGluLysIleAlaSerLeuIleLeuIlePheValCysGlnCysCysIleLeuIleT : 20 :!!|||||||||::!|||:!!:!!||| !!.:!! !! ! ! ||| !.!! LeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheL 284596 : TTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCC : 284653 21 : hrValLeuProCysIleLeuTyrIleValLeuAsp<->AspAspAspIleAlaGluLy : 38 !:!!:!!|||||| !|||! !! !||||||||| !! !|||:!!! ! !|| euLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLy 284654 : TCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAA : 284710 39 : sLeuMetValValGlyProLeuSerHisTrpPheValGlyGlyCysAsnTyrThrThr : 57 |:!!! :!!:!!|||||||||||| !!! .!.:!!!.!!.! !!!.||| !! ! sIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIle 284711 : GATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATT : 284767 58 : LeuLeuLeuHisSerLysGluIleArgPheCysAlaGlnGlnMetLysSerAsp{Tr} : 76 |||:!!! !!.!.!! :!!||| !! |||!.!:!!.!.!!:::::!!|||{||} LeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIleArgAlaAsp{Tr} 284768 : CTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGAC{TG} : 284824 77 : >>>> Target Intron 1 >>>> {p}MetThrValThrArgLeuLysAspLe : 85 1012 bp {|}:!::!! !!::::: :::::: ++ +-{p}LeuSerHisSerGlnGluGluGluAr 284825 : gt.........................ac{G}CTTTCGCATAGtcaagaagaggagag : 285863 86 : uGlnValMetLeuLysTyrSerLysLeuGlyArgTyrValValValPheCysAlaAla : 104 ::::::||| ! ! !:!!!:!:!!||||||! !:!!!.!:!!|||||||||!.! gGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGly 285864 : agagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGT : 285920 105 : PheMet<->GlnGlyGlyValLeuCysPheCysAlaLeuArgAlaPheThrValGluT : 123 |||||| ...|||||| !!!!!! ! ! !.!:!!! ! !! !||||||...| PheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgT 285921 : TTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCA : 285980 124 : hrValLeuIleGlyAsnAspThrLysAsnValHisLeuValProCysThrProSerLy : 142 ||! !:!!|||! !|||!!:||| !!.. !!!. ! !!||| ! ! !:: hrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIle------TyrAr 285981 : CGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATC------TATCG : 286031 143 : sLysValIleSerPheAspThrSerProThrAsnGluIlePheIleAlaLeuGlnPhe : 161 : :!!:!!..! !|||||||||:!! !|||||| ! ! !:!!|||! ! gGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCys 286032 : CGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGC : 286088 162 : LeuSerGlyPheIleValAsnSerThrAlaAlaGlyAlaPheSerPheAlaAlaValS : 181 |||:!!!.!|||:!!:!! !!|||..!.!!!.!||||||! !|||!!.|||||||||! LeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValP 286089 : TTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGT : 286148 182 : erAlaAlaHisAlaTyrGlyGlnLeuAsnValLeuThrAspTrpIleLysGluLeuLe : 200 !!.! !|||!.!! !||||||!!!!..:!!|||..! !:!: ! :!!|||:! heValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuVa 286149 : TCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGT : 286205 201 : uAsnArgThr<->GlyLysPheAspArgLysIleAspSerAsnLysIleGlyIleIle : 218 !:!! !!..! |||!:! ! !!..! !!..!.!.::!:!:||| !||| lAspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIle 286206 : CGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATC : 286262 219 : ValAsnAsnHisLeuArgIleLeu{Th} >>>> Target Intron 2 >>>> { : 227 :!!.!.:!!||||||!:!||||||{ } 491 bp { IleGluHisHisLeuLysIleLeu{Gl}++ -+{ 286263 : ATCGAGCATCATCTGAAGATACTG{GG}gt.........................gg{ : 286782 228 : r}PheIleAlaAsnIleGluAspIleMetAsnLysIleCysLeuMetGluLeuPheLy : 246 !}.!.:!! !!.! !!:! !! !! :!! ! :!:|||! ! .!. ! ! ! y}IleLeuPheThr---AspGlyAsnArgAspAspLeuCysTyrTyrHisThrValMe 286783 : G}ATATTATTTACT---GACGGTAACAGAGACGACTTGTGTTATTACCATACTGTAAT : 286834 247 : sCysThrValCysIleCysThrLeuGluTyrHisIleLeuMetGluTrpAlaAsnHis : 265 !...! !:!!....!! !! !! !..!! :!!!!! !||||||! !.!. ! tAlaIleIleAlaPheValMetTyrSerLeuSerValPhe***GluTrpGluGlnSer 286835 : GGCAATAATTGCATTCGTCATGTACTCGTTGTCAGTTTTCTAGGAATGGGAGCAAAGT : 286891 266 : AspTyrGlnSerValThrSerPhePheLeuValLeuCysSerMetSerPheAsnMetP : 285 !!: ! !.!!..!! !!!!!:!! ! !:!!||| |||.!.!!!||||||:!:| GluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerPheThrPheAsnValP 286892 : GAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTT : 286951 286 : heIleValCysTyrIleGlyGluLysLeuSerGluGln >>>> Target Intron : 298 |||||:!!|||||||||||||||! |||||||||||| 74 bp heIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286952 : TCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt.................. : 286992 299 : 3 >>>> CysLysSerIleGlyGluThrValTyrMetThrAsnTrpTyrTyrLeuP : 314 ||| !!.!:!!||| !:!!..!||||||! !:!!|||||| !|||| ++CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuP 286993 : .......agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGC : 287112 315 : roAsnLysAspIleLeuAspLeuIleMetIleIleSerArgSerHisMetMetThrLy : 333 ||...||| !! !! !||||||:!!|||.!!:!! !|||:!! ! !|| roGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLy 287113 : CAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAA : 287169 334 : sIleThrAlaGlyLysValValProMetSerPheAspThrPheAlaSerValIleLys : 352 |:!!||||||||||||:!!:!! !:!:|||!!...!!:!|||..!||||||! !! sLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIle 287170 : ATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATC : 287226 353 : ThrGlyPheAlaTyrLeuAsnVal : 360 ! !..!!!.:!!|||! !:!!:!! IleAsnLeuSerTyrTyrHisLeu 287227 : ATAAATTTATCCTATTATCATTTG : 287252 vulgar: gi|805766378|ref|XP_012135245.1| 0 360 . KQ414889.1 284595 287252 + 366 M 31 93 G 0 3 M 44 132 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 30 90 G 0 3 M 32 96 G 2 0 M 63 189 G 0 3 M 23 69 S 0 2 5 0 2 I 0 487 3 0 2 S 1 1 M 4 12 G 1 0 M 65 195 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284596 287252 366 + . gene_id 8 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284596 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284596 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286781 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286780 286781 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 286782 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286782 286989 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284596 287252 366 + . alignment_id 8 ; Query gi|805766378|ref|XP_012135245.1| ; Align 284596 1 93 ; Align 284692 32 132 ; Align 285839 77 90 ; Align 285932 107 96 ; Align 286028 141 189 ; Align 286220 204 69 ; Align 286783 228 12 ; Align 286795 233 195 ; Align 287064 298 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 364 Query range: 0 -> 360 Target range: 278648 -> 280465 1 : MetGluLysIleAlaSerLeuIleLeuIlePheValCysGlnCysCysIleLeuIleT : 20 :!!|||||||||::!|||:!!:!!||| !!.:!! !! ! ! ||| !.!! LeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheL 278649 : TTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCC : 278706 21 : hrValLeuProCysIleLeuTyrIleValLeuAsp<->AspAspAspIleAlaGluLy : 38 !:!!:!!|||||| !|||! !! !||||||||| !! !|||:!!! ! !|| euLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLy 278707 : TCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAA : 278763 39 : sLeuMetValValGlyProLeuSerHisTrpPheValGlyGlyCysAsnTyrThrThr : 57 |:!!! :!!:!!|||||||||||| !!! :!!!.! ! !!!.||| !! ! sIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIle 278764 : GATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATT : 278820 58 : LeuLeuLeuHisSerLysGluIleArgPheCysAlaGlnGlnMetLysSerAspTrp< : 77 |||:!!! !!.!.!! :!!||| !! |||!.!.!..!.!!::::!!!|||||| LeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpS 278821 : CTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGT : 278880 78 : -><-><->MetThrValThrArgLeuLysAspLeuGlnValMetLeuLysTyrSerLy : 93 :!::!! ! ::: :::::: ::::::||| ! ! !:!!!: erLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaAr 278881 : CTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAG : 278937 94 : sLeuGlyArgTyrValValValPheCysAlaAlaPheMet<->GlnGlyGlyValLeu : 111 !:!!||||||! !:!!!.!:!!||| !!|||!.!|||||| ...|||||||||!!! gIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPhe 278938 : AATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTC : 278994 112 : CysPheCysAlaLeuArgAlaPheThrValGluThrValLeuIleGlyAsnAspThrL : 131 ! ! !..!!.!:!!! ! !|||.!!|||...|||! !:!!|||! !|||!!:||| TyrThrAlaValMetProLeuPheAlaValArgThrGluIleIleAspAsnGluThrV 278995 : TACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGG : 279054 132 : ysAsnValHisLeuValProCysThrProSerLysLysValIleSerPheAspThrSe : 150 !!.. !!!. ! !!||| ! ! !::: :!!:!!..! !||||| alArgSerGlnAlaPheProIle------TyrArgGlyLeuLeuAspProArgThrSe 279055 : TGAGATCTCAAGCGTTCCCGATC------TATCGCGGCCTCCTCGATCCGCGTACCAG : 279105 151 : rProThrAsnGluIlePheIleAlaLeuGlnPheLeuSerGlyPheIleValAsnSer : 169 ||||:!! !|||||| ! ! !:!!|||! !|||:!!!.!|||:!!:!! !!||| rProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSer 279106 : CCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCG : 279162 170 : ThrAlaAlaGlyAlaPheSerPheAlaAlaValSerAlaAlaHisAlaTyrGlyGlnL : 189 ..!.!!!.!||||||! !|||!!. !||||||! !!.! !|||!.!! !||||||! ValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCysGlyGlnP 279163 : GTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAAT : 279222 190 : euAsnValLeuThrAspTrpIleLysGluLeuLeuAsnArgThr<->GlyLysPheAs : 207 !!!..:!!|||..! !:!: ! :!!|||:!!:!! !!..! |||!:! .. heArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLysGlyArgLysSe 279223 : TCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGGAGGAAGAG : 279279 208 : pArgLysIleAspSerAsnLysIleGlyIleIleValAsnAsnHisLeuArg >>>> : 225 ! !!..! !!..!.!.::!:!:||| !|||:!!.!.:!!||||||!:! rLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLys-+ 279280 : CTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGat.... : 279335 226 : Target Intron 1 >>>> IleLeuThrPheIleAlaAsnIleGluAspIleMe : 236 651 bp !!:||| ! !||| ! !! !.!.! !! !! +-MetLeuPheAspIleLeuPheThrHisGlyAsnAr 279336 : .....................atATGCTTTTTGACATATTATTTACTCACGGTAACAG : 280017 237 : tAsnLysIleCysLeuMetGluLeuPheLysCysThrValCysIleCysThrLeuGlu : 255 :!! ! :!!|||! !.!..!.:!! ! ! !...! !:!!....!! !! !! !..! gAspAspLeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSer 280018 : AGACGACTTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCG : 280074 256 : TyrHisIleLeuMetGluTrpAlaAsnHisAspTyrGlnSerValThrSerPhePheL : 275 ! :!!!!! !||||||! !.!.:!!||| ! !.!!..! !!!!!:!!!.: LeuSerValPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuM 280075 : TTGTCAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAA : 280134 276 : euValLeuCysSerMetSerPheAsnMetPheIleValCysTyrIleGlyGluLysLe : 294 !! !!||| |||:!:!!!||||||:!:||||||:!!|||||||||||||||! || etPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLe 280135 : TGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCT : 280191 295 : uSerGluGln >>>> Target Intron 2 >>>> CysLysSerIleGlyGluT : 304 |||||||||| 74 bp ||| !!.!:!!|||! !: uSerGluGln++ ++CysLeuLysValGlyValS 280192 : CTCCGAACaggt.........................agTGCTTAAAAGTCGGCGTGT : 280295 305 : hrValTyrMetThrAsnTrpTyrTyrLeuProAsnLysAspIleLeuAspLeuIleMe : 323 !!..!||||||! !:!!|||||| !||||||...||| ! !! !! !||||||:! erThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLe 280296 : CAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACT : 280352 324 : tIleIleSerArgSerHisMetMetThrLysIleThrAlaGlyLysValValProMet : 342 !|||.!!:!! !|||:!! ! !|||:!!||||||||||||:!!:!! !:!: uIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeu 280353 : GATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTC : 280409 343 : SerPheAspThrPheAlaSerValIleLysThrGlyPheAlaTyrLeuAsnVal : 360 |||!!...!!:!|||..!||||||! !! ! !..!!!.:!!|||! !:!!:!! SerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280410 : TCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: gi|805766378|ref|XP_012135245.1| 0 360 . KQ414889.1 278648 280465 + 364 M 31 93 G 0 3 M 45 135 G 0 9 M 30 90 G 0 3 M 32 96 G 2 0 M 63 189 G 0 3 M 21 63 5 0 2 I 0 647 3 0 2 M 73 219 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278649 280465 364 + . gene_id 9 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278649 279332 . + . KQ414889.1 exonerate:protein2genome:local exon 278649 279332 . + . insertions 18 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 279333 279334 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 279333 279983 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279982 279983 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 279984 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 279984 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278649 280465 364 + . alignment_id 9 ; Query gi|805766378|ref|XP_012135245.1| ; Align 278649 1 93 ; Align 278745 32 135 ; Align 278889 77 90 ; Align 278982 107 96 ; Align 279078 141 189 ; Align 279270 204 63 ; Align 279984 225 219 ; Align 280277 298 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 359 Query range: 260 -> 364 Target range: 272836 -> 273299 261 : GluTrpAlaAsnHisAspTyrGlnSerValThrSerPhePheLeuValLeuCysSerM : 280 ||||||.!!:!!||||||!:!||||||:!!|||!!!!:!|||:!!:!!||| |||| GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 281 : etSerPheAsnMetPheIleValCysTyrIleGlyGluLysLeuSerGluGln >>> : 298 ||:::||||||:::||||||||||||||||||||||||! !|||!!!|||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 299 : > Target Intron 1 >>>> CysLysSerIleGlyGluThrValTyrMetThrA : 309 70 bp ||||||...|||||||||..!||||||||||||| ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 310 : snTrpTyrTyrLeuProAsnLysAspIleLeuAspLeuIleMetIleIleSerArgSe : 328 |||||||||||||||||..!|||||||||||||||||||||:!!||||||||||||!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 329 : rHisMetMetThrLysIleThrAlaGlyLysValValProMetSerPheAspThrPhe : 347 ! !:!::!!! !|||||||||||||||!:!:!!|||||||||||| ! !!|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 348 : AlaSer >>>> Target Intron 2 >>>> ValIleLysThrGlyPheAlaTy : 357 !.!..! 81 bp |||!!:|||!:!!.!|||||||| GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 358 : rLeuAsnValLeuArgGlnThr : 364 |||||||:!!|||||||||||| rLeuAsnMetLeuArgGlnThr 273277 : CTTAAATATGCTACGACAAACG : 273299 vulgar: gi|805766378|ref|XP_012135245.1| 260 364 . KQ414889.1 272836 273299 + 359 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273299 359 + . gene_id 10 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273299 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273299 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273299 359 + . alignment_id 10 ; Query gi|805766378|ref|XP_012135245.1| ; Align 272837 261 111 ; Align 273018 298 156 ; Align 273255 350 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 292 Query range: 1 -> 226 Target range: 217249 -> 217921 2 : GluLysIleAlaSerLeuIleLeuIlePheValCysGlnCysCysIleLeuIleThrV : 21 ..!|||||| !! ! !:!::!!! ! !:!!||| ! !!! ||| !.!! ! ArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuP 217250 : CGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTAT : 217307 22 : alLeuProCysIleLeuTyrIleValLeuAspAspAspAspIleAlaGluLysLeuMe : 40 !!:!!|||||| !:!!|||:!: !!|||!!:! !!!:|||:!! !!!:||||||! heValProCysSerMetTyrValPheLeuGluValGluAspLeuTyrAspLysLeuLy 217308 : TCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAA : 217364 41 : tValValGlyProLeuSerHisTrpPheValGlyGlyCysAsnTyrThrThrLeuLeu : 59 :!! !!|||||||||! ! !!! ! :!!!.! ! !!!.||| !:!!|||:!! sLeuPheGlyProLeuIlePheCysValMetAlaPheValLysTyrTyrSerLeuIle 217365 : ACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATC : 217421 60 : LeuHisSerLysGluIleArgPheCysAlaGlnGlnMetLysSerAspTrpMetThrV : 79 :!!|||!.! !!!:|||||| |||!.!::!::!!!::!! !!||||||! !!.!| ValHisLysAlaAspIleArgGluCysValArgArgIleGluArgAspTrpArgAsnV 217422 : GTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATG : 217481 80 : alThrArgLeuLysAspLeuGlnValMetLeuLysTyrSerLysLeuGlyArgTyrVa : 98 ||! ! !! !|||||| !:!!!.!|||:!! ! !!:!!!!.!!!|||||| ! :! alArgCysGluLysAspArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysLe 217482 : TCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATT : 217538 99 : lValValPheCysAlaAlaPheMetGlnGlyGlyValLeuCysPheCysAlaLeuArg : 117 !|||:!!.!!|||.!! !|||||| ! .!!||| ::: ::: ! !! ! uValLeuLeuCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIle 217539 : GGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcgttttttattacatCGCTATA : 217595 118 : AlaPheThrValGluThrValLeuIleGlyAsnAspThrLysAsnValHisLeuValP : 137 !!.!!!:!|||! !! !:!!||| ! !|||! !.! !.! !! !! !:!! ProIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeuV 217596 : CCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGG : 217655 138 : roCysThrProSerLysLysValIleSerPheAspThrSerProThrAsnGluIlePh : 156 !! ! !! !!!!||| ! :!!|||..! ! ! !!!!||||||||||||||| ! alPheProPheThrLysTyrIleIleAspThrArgTyrThrProThrAsnGluIleVa 217656 : TGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCTACGAACGAAATTGT : 217712 157 : eIleAlaLeuGlnPheLeuSerGlyPheIleValAsnSerThrAlaAlaGlyAlaPhe : 175 .!! !||||||!!.:!!:!!||| !:!::!!:!!.!!! !.!!:!!!.!|||! ! lPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCys 217713 : GTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGC : 217769 176 : SerPheAlaAlaValSerAlaAlaHisAlaTyrGlyGlnLeuAsnValLeuThrAspT : 195 |||!!.||||||!.!! !|||!.!||||||! !||||||:!!.!.||||||! !:!!| SerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGluValLeuMetAsnT 217770 : AGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACT : 217829 196 : rpIleLysGluLeuLeuAsnArgThrGlyLysPheAspArgLysIleAspSerAsnLy : 214 ||:!::!!.!.|||:!!:!! !!! !!.! ! .!...! !! :!:||| ..!!: rpLeuGlnHisLeuIleAspGlyArgAlaAspMetSerAspThrValAsp---GlyAr 217830 : GGCTGCAACATTTAATCGACGGTAGAGCGGATATGAGCGATACTGTGGAT---GGTAG : 217883 215 : sIleGlyIleIleValAsnAsnHisLeuArgIleLeu : 226 !|||!.!! !||||||!:!.!.|||:!!||||||||| gIleAlaSerIleValSerGlnHisValArgIleLeu 217884 : AATCGCGAGCATCGTCAGTCAACACGTTCGGATATTA : 217921 vulgar: gi|805766378|ref|XP_012135245.1| 1 226 . KQ414889.1 217249 217921 + 292 M 210 630 G 1 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217250 217921 292 + . gene_id 11 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217250 217921 . + . KQ414889.1 exonerate:protein2genome:local exon 217250 217921 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217250 217921 292 + . alignment_id 11 ; Query gi|805766378|ref|XP_012135245.1| ; Align 217250 2 630 ; Align 217880 213 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 286 Query range: 260 -> 363 Target range: 238411 -> 238915 261 : GluTrpAlaAsnHisAspTyrGlnSerValThrSerPhePheLeuValLeuCysSerM : 280 |||||||||.!. !||| !:!!! !:!!! !!!!!:!|||:!!!.!||| !:!!! GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheValAlaLeuValAlaI 238412 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTGTAGCACTCGTTGCTA : 238469 281 : etSerPheAsnMetPheIleValCysTyrIleGlyGluLysLeuSerGluGln >>> : 298 !: !! !|||! ||||||:!!|||||||||.!!|||!:!|||!!!|||||| leValSerAsnThrPheIleLeuCysTyrIleSerGluArgLeuThrGluGln++ 238470 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGAAAGGCTGACAGAACAGgt... : 238525 299 : > Target Intron 1 >>>> CysLysSerIleGlyGluThrValTyrMetThrA : 309 106 bp ||| !!.!:!!||||||..!||||||||||||: ++CysLeuLysValGlyGluValValTyrMetThrA 238526 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 238662 310 : snTrpTyrTyrLeuProAsnLysAspIleLeuAspLeuIleMetIleIleSerArgSe : 328 !!|||||||||||||||.!.!:! |||||||||||||||:!!||||||!.!||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSe 238663 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATC : 238719 329 : rHisMetMetThrLysIleThrAlaGlyLysValValProMetSerPheAspThrPhe : 347 |:!!:!!:!:..!|||:!!|||||||||||||||:!!! !||||||.!! !!|||||| rAsnValValValLysValThrAlaGlyLysValLeuHisMetSerLeuTyrThrPhe 238720 : GAACGTGGTCGTTAAAGTCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTC : 238776 348 : AlaSer >>>> Target Intron 2 >>>> ValIleLysThrGlyPheAlaTy : 357 !.!..! 89 bp |||:!!||||||||||||||||| GlyAsp++ ++ValValLysThrGlyPheAlaTy 238777 : GGCGATgt.........................agGTAGTAAAAACAGGATTCGCCTA : 238895 358 : rLeuAsnValLeuArgGln : 363 |:!!|||:!!||| !!||| rMetAsnMetLeuCysGln 238896 : CATGAATATGCTTTGTCAA : 238915 vulgar: gi|805766378|ref|XP_012135245.1| 260 363 . KQ414889.1 238411 238915 + 286 M 37 111 5 0 2 I 0 102 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238412 238915 286 + . gene_id 12 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 238412 238522 . + . KQ414889.1 exonerate:protein2genome:local exon 238412 238522 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238523 238524 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238523 238628 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 238627 238628 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238629 238784 . + . KQ414889.1 exonerate:protein2genome:local exon 238629 238784 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238785 238786 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238785 238873 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 238872 238873 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238874 238915 . + . KQ414889.1 exonerate:protein2genome:local exon 238874 238915 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238412 238915 286 + . alignment_id 12 ; Query gi|805766378|ref|XP_012135245.1| ; Align 238412 261 111 ; Align 238629 298 156 ; Align 238874 350 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 275 Query range: 260 -> 363 Target range: 254071 -> 254561 261 : GluTrpAlaAsnHisAspTyrGlnSerValThrSerPhePheLeuValLeuCysSerM : 280 ||||||.!!.!. !||| !|||! !:!! !!!!!:!.!!:!!..!||| !:!!: GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaV 254072 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTG : 254129 281 : etSerPheAsnMetPheIleValCysTyrIleGlyGluLysLeuSerGluGln >>> : 298 !: ! ||| |||::::::|||||||||.!!!!:!:!|||!!!|||||| alValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 254130 : TTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt... : 254185 299 : > Target Intron 1 >>>> CysLysSerIleGlyGluThrValTyrMetThrA : 309 92 bp ||| !!.!:!!||||||..!||||||||||||: ++CysLeuLysValGlyGluValValTyrMetThrA 254186 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 254308 310 : snTrpTyrTyrLeuProAsnLysAspIleLeuAspLeuIleMetIleIleSerArgSe : 328 !!|||||||||||||||.!.!:! |||||||||||||||:!!||||||!!!||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSe 254309 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATC : 254365 329 : rHisMetMetThrLysIleThrAlaGlyLysValValProMetSerPheAspThrPhe : 347 |:!!:!!:!:..!:!!|||||||||||||||::: ||||||.!! !!|||||| rAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPhe 254366 : GAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTC : 254422 348 : AlaSer >>>> Target Intron 2 >>>> ValIleLysThrGlyPheAlaTy : 357 !.!..! 89 bp |||:!!||||||||||||||||| GlyAsp++ ++ValValLysThrGlyPheAlaTy 254423 : GGCGATgt.........................agGTAGTAAAAACAGGATTCGCCTA : 254541 358 : rLeuAsnValLeuArgGln : 363 |||||||:!!||| !!||| rLeuAsnMetLeuCysGln 254542 : CTTGAATATGCTTTGTCAA : 254561 vulgar: gi|805766378|ref|XP_012135245.1| 260 363 . KQ414889.1 254071 254561 + 275 M 37 111 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254072 254561 275 + . gene_id 13 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254072 254182 . + . KQ414889.1 exonerate:protein2genome:local exon 254072 254182 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254183 254184 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254183 254274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254273 254274 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254275 254430 . + . KQ414889.1 exonerate:protein2genome:local exon 254275 254430 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254431 254432 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254431 254519 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 254518 254519 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254520 254561 . + . KQ414889.1 exonerate:protein2genome:local exon 254520 254561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254072 254561 275 + . alignment_id 13 ; Query gi|805766378|ref|XP_012135245.1| ; Align 254072 261 111 ; Align 254275 298 156 ; Align 254520 350 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 229 Query range: 296 -> 365 Target range: 264723 -> 265010 297 : GlnCysLysSerIleGlyGluThrValTyrMetThrAsnTrpTyrTyrLeuProAsnL : 316 |||||||||!.!:!!||||||..!|||||||||:!!|||||||||||||||||| !!| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 317 : ysAspIleLeuAspLeuIleMetIleIleSerArgSerHisMetMetThrLysIleTh : 335 ||||||||||||||||||||:!:||||||! !|||||| !:!!:!! !|||.!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 336 : rAlaGlyLysValValProMetSerPheAspThrPheAlaSer >>>> Target I : 350 ||||||||||:!!:!!! !||||||.!. !!||||||::!..! 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 351 : ntron 1 >>>> ValIleLysThrGlyPheAlaTyrLeuAsnValLeuArgGlnTh : 364 bp |||||||||:!!..!|||.!!|||||||||:!!||||||||||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArgGlnTh 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGCCAAAC : 265005 365 : rIle : 365 |!!: rMet 265006 : GATG : 265010 vulgar: gi|805766378|ref|XP_012135245.1| 296 365 . KQ414889.1 264723 265010 + 229 M 53 159 5 0 2 I 0 76 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265010 229 + . gene_id 14 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265010 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265010 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265010 229 + . alignment_id 14 ; Query gi|805766378|ref|XP_012135245.1| ; Align 264724 297 159 ; Align 264963 350 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 210 Query range: 253 -> 361 Target range: 305079 -> 305816 254 : LeuGluTyrHisIleLeuMetGluTrpAlaAsnHisAspTyrGlnSerValThrSerP : 273 ||| :::::: ..!!!:|||! !!:! !:!! ! |||:!!|||!!!! LeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrThrT 305080 : TTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACAT : 305137 274 : hePheLeuValLeuCysSerMetSerPheAsnMetPheIleValCysTyrIleGlyGl : 292 :! :!!:!!||| |||:!:!!!||||||!!:||||||:!!|||||||||||||| yrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGl 305138 : ATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGA : 305194 293 : uLysLeuSerGluGln >>>> Target Intron 1 >>>> CysLysSerIleG : 302 |! |||! !|||:!! 413 bp !!!..|||:!!| uIleLeuMetGluLys++ ++SerSerSerValG 305195 : GATTCTTATGGAAAAGgt.........................agAGCAGTAGCGTTG : 305637 303 : lyGluThrValTyrMetThrAsnTrpTyrTyrLeuProAsnLysAspIleLeuAspLe : 321 || !:!! !!:!|||! !!:!||||||:!!||||||!.!||| |||! !! !|| lyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGlyLe 305638 : GATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCT : 305694 322 : uIleMetIleIleSerArgSerHisMetMetThrLysIleThrAlaGlyLysValVal : 340 ||||:!:||||||:!!! !||| !! .!!||||||!:!||||||||||||||| uIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysValVal 305695 : TATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTT : 305751 341 : ProMetSerPheAspThrPheAlaSerValIleLysThrGlyPheAlaTyrLeuAsnV : 360 !:!:|||!!...!||||||!.!!:!|||! ! ! ! :::::: ::::::: AspLeuSerLeuSerThrPheGlyAsnValSerTyrTyrGlnTyrSerAsnIleSerI 305752 : GATTTATCTTTATCCACATTTGGAAACGTGAGTTACTATcaatattccaatatttcaa : 305811 361 : alLeu : 361 ::::: leVal 305812 : ttgtt : 305816 vulgar: gi|805766378|ref|XP_012135245.1| 253 361 . KQ414889.1 305079 305816 + 210 M 44 132 5 0 2 I 0 409 3 0 2 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305080 305816 210 + . gene_id 15 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305080 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305080 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305816 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305816 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305080 305816 210 + . alignment_id 15 ; Query gi|805766378|ref|XP_012135245.1| ; Align 305080 254 132 ; Align 305625 298 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 206 Query range: 260 -> 353 Target range: 244441 -> 244826 261 : GluTrpAlaAsnHisAspTyrGlnSerValThrSerPhePheLeuValLeuCysSerM : 280 |||||||||.!. !||| !:!!! !:!!! !!!!!:!|||:!!!.!||| !:!!! GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheIleAlaLeuValAlaI 244442 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTATAGCACTCGTTGCTA : 244499 281 : etSerPheAsnMetPheIleValCysTyrIleGlyGluLysLeuSerGluGlnCysLy : 299 !: !! !|||! ||||||:!!|||||||||.!!!!:!:!|||!!!|||||| :! leValSerAsnThrPheIleLeuCysTyrIleSerAspArgLeuThrGluGlnValGl 244500 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGACAGGCTGACAGAACAGGTACA : 244556 300 : sSerIle{Gl} >>>> Target Intron 1 >>>> {y}GluThrValTyrMet : 307 !..!! !{..} 106 bp {!}|||..!||||||||| nGluThr{As}-+ -+{n}GluValValTyrMet 244557 : AGAGACA{AA}tt.........................gg{T}GAAGTGGTTTACATG : 244686 308 : ThrAsnTrpTyrTyrLeuProAsnLysAspIleLeuAspLeuIleMetIleIleSerA : 327 |||:!!|||||||||||||||.!.!:! |||||||||||||||:!!||||||!.!| ThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysA 244687 : ACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAAC : 244746 328 : rgSerHisMetMetThrLysIleThrAlaGlyLysValValProMetSerPheAspTh : 346 |||||:!!|||:!:..!:!!||||||||||||||||||:!!! !||||||.!! !!|| rgSerAsnMetValValGluIleThrAlaGlyLysValLeuHisMetSerLeuTyrTh 244747 : GATCGAACATGGTCGTTGAAATCACCGCTGGAAAAGTATTACATATGTCGCTTTACAC : 244803 347 : rPheAlaSerValIleLysThr : 353 ||||!.!..!|||! !:!!||| rPheGlyAspValSerGluThr 244804 : GTTCGGCGATGTAAGTGAAACT : 244826 vulgar: gi|805766378|ref|XP_012135245.1| 260 353 . KQ414889.1 244441 244826 + 206 M 41 123 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244442 244826 206 + . gene_id 16 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244442 244566 . + . KQ414889.1 exonerate:protein2genome:local exon 244442 244566 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244567 244568 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 244567 244672 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244671 244672 . + . intron_id 0 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 244673 244826 . + . KQ414889.1 exonerate:protein2genome:local exon 244673 244826 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244442 244826 206 + . alignment_id 16 ; Query gi|805766378|ref|XP_012135245.1| ; Align 244442 261 123 ; Align 244674 303 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 199 Query range: 295 -> 350 Target range: 277548 -> 277713 296 : GluGlnCysLysSerIleGlyGluThrValTyrMetThrAsnTrpTyrTyrLeuProA : 315 ..!|||||||||!.!:!!||||||..!||||||||||||||||||||||||||||||: ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 316 : snLysAspIleLeuAspLeuIleMetIleIleSerArgSerHisMetMetThrLysIl : 334 !!||||||||||||:!!|||:!!:!:||||||||||||||| !:::::: ||||| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 335 : eThrAlaGlyLysValValProMetSerPheAspThrPheAlaSerVal : 350 |||||||||||||:::::: |||||| ! !!||||||!.!..!||| eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspVal 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTA : 277713 vulgar: gi|805766378|ref|XP_012135245.1| 295 350 . KQ414889.1 277548 277713 + 199 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277713 199 + . gene_id 17 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277549 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277713 199 + . alignment_id 17 ; Query gi|805766378|ref|XP_012135245.1| ; Align 277549 296 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 295 -> 350 Target range: 283273 -> 283438 296 : GluGlnCysLysSerIleGlyGluThrValTyrMetThrAsnTrpTyrTyrLeuProA : 315 ..!|||||||||!.!:!!||||||..!|||||||||||||||! !!:!|||||||||: ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 316 : snLysAspIleLeuAspLeuIleMetIleIleSerArgSerHisMetMetThrLysIl : 334 !!||||||||||||:!!|||:!!:!:||||||||||||||| !:::::: ||||| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 335 : eThrAlaGlyLysValValProMetSerPheAspThrPheAlaSerVal : 350 |||||||...|||:::::: |||||| !!||||||! !..!||| eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspVal 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTA : 283438 vulgar: gi|805766378|ref|XP_012135245.1| 295 350 . KQ414889.1 283273 283438 + 171 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283438 171 + . gene_id 18 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283438 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283438 171 + . alignment_id 18 ; Query gi|805766378|ref|XP_012135245.1| ; Align 283274 296 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 294 -> 350 Target range: 234979 -> 235147 295 : SerGluGlnCysLysSerIleGlyGluThrValTyrMetThrAsnTrpTyrTyrLeuP : 314 !!!:!!||||||! !.!:!!||||||! !||||||||||||.!.|||||| |||| ThrGlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuP 234980 : ACTCAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTAC : 235037 315 : roAsnLysAspIleLeuAspLeuIleMetIleIleSerArgSerHisMetMetThrLy : 333 ||:!!||| ! !|||! !|||:!!|||||||||||||||||| !|||:!!! !|| roHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLy 235038 : CTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAA : 235094 334 : sIleThrAlaGlyLysValValProMetSerPheAspThrPheAlaSerVal : 350 |||||||||||||||| !!:!!! !|||||| !!! ||||||!.!..!||| sIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235095 : AATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: gi|805766378|ref|XP_012135245.1| 294 350 . KQ414889.1 234979 235147 + 170 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234980 235147 170 + . gene_id 19 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234980 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234980 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234980 235147 170 + . alignment_id 19 ; Query gi|805766378|ref|XP_012135245.1| ; Align 234980 295 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 20 -> 205 Target range: 194297 -> 194849 21 : ValLeuProCysIleLeuTyrIleValLeuAspAspAspAspIleAlaGluLysLeuM : 40 :!!:!!||| !:!::!!|||! ! !!!!||| !!!:|||:!:.!!..! ! :!!! LeuValProHisValIleTyrThrTyrPheAspCysGluAspLeuThrArgTyrMetL 194298 : CTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAGGATCTGACGAGGTACATGA : 194355 41 : etValValGlyProLeuSerHisTrpPheValGlyGlyCysAsnTyrThrThrLeuLe : 59 !|||:!!!.! !!! ! ! ! ! .!.:!!!.! ! !!!.!:! !|||:!!:! ysValIleAlaAlaGlnValPheSerLeuLeuAlaIleIleLysPheTrpThrMetIl 194356 : AGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGAT : 194412 60 : uLeuHisSerLysGluIleArgPheCysAlaGlnGlnMetLysSerAspTrpMetThr : 78 !:!!:!!!!!|||||||||||||||||| !! !:!!|||:!!!!!.!.!::! ! eValAsnArgLysGluIleArgPheCysLeuLeuGluMetGluThrGlnTyrArgAsp 194413 : CGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGAC : 194469 79 : ValThrArgLeuLysAspLeuGlnValMetLeuLysTyrSerLysLeuGlyArgTyrV : 98 ||| ! !! !:!!|||! !||||||||| !!!.! !:!!|||:!!||||||!:! ValGluCysGluGluAspArgGlnValMetThrAsnCysAlaLysIleGlyArgPheP 194470 : GTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTT : 194529 99 : alValValPheCysAlaAlaPheMetGlnGlyGlyValLeuCysPheCysAlaLeuAr : 117 !!..!..!.!.! ! !!.!.!! ! ||||||!.!||| !:! ! !:!!! heThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLe 194530 : TTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCT : 194586 118 : gAlaPheThrValGluThrValLeuIleGlyAsnAspThrLysAsnValHisLeuVal : 136 ! !!.!.! ! !|||! !:!!:!!! ! !:!!:!!!:!! .!.:!!! !||| uProLeuMetSerGluArgIleValLysGluAspAsnSerThrGlnIleProLeu--- 194587 : ACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAACAGTACTCAGATACCTCTG--- : 194643 137 : ProCysThrProSerLysLysValIleSerPheAspThrSerProThrAsnGluIleP : 156 |||! ! ! !!:! ! !!.!!:!!.!!!!: !||||||! ! !!|||||| ProTyrLeuSerAsnTyrValPhePheAlaIleGluAspSerProIleTyrGluIleT 194644 : CCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTA : 194700 157 : heIleAlaLeuGlnPheLeuSerGlyPheIleValAsnSerThrAlaAlaGlyAlaPh : 175 .!!!.!! !|||.!.|||! !.!! !|||:!! |||||| !..!||| !!: hrPheValSerGlnIleLeuIleSerSerIleIleLeuSerThrAsnCysGlyIleTy 194701 : CATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGTCGACGAATTGTGGGATTTA : 194757 176 : eSerPheAlaAlaValSerAlaAlaHisAlaTyrGlyGlnLeuAsnValLeuThrAsp : 194 !|||!!.!.!|||..!! ! ! !|||..!! !||| !!!!.!.||| !!:! rSerLeuValAlaThrIleIleMetHisCysCysGlyLeuPheGluValThrSerArg 194758 : TAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGA : 194814 195 : TrpIleLysGluLeuLeuAsnArgThrGlyLys : 205 !!!!::!! :!!! ! ! !||||||||| ArgMetGluThrIleSerValProThrGlyLys 194815 : AGGATGGAGACTATTTCTGTGCCCACTGGGAAG : 194849 vulgar: gi|805766378|ref|XP_012135245.1| 20 205 . KQ414889.1 194297 194849 + 165 M 115 345 G 1 0 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194298 194849 165 + . gene_id 20 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194298 194849 . + . KQ414889.1 exonerate:protein2genome:local exon 194298 194849 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 194298 194849 165 + . alignment_id 20 ; Query gi|805766378|ref|XP_012135245.1| ; Align 194298 21 345 ; Align 194643 137 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 260 -> 350 Target range: 206050 -> 206401 261 : GluTrpAlaAsnHisAspTyrGlnSerValThrSerPhePheLeuValLeuCysSerM : 280 ||||||! !|||:!!:!! !:!!|||! ! !!:!.!! !:!!! ! ||| GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 281 : etSerPheAsnMetPheIleValCysTyrIleGlyGluLysLeuSerGluGln >>> : 298 !!!||| !:!:||||||:!!||||||||||||:!! |||! !!!:||| ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 299 : > Target Intron 1 >>>> CysLysSerIleGlyGluThrValTyrMetThrA : 309 81 bp ! ! !:!:||| !||| !! !! !..!| ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 310 : snTrpTyrTyrLeuProAsnLysAspIleLeuAspLeuIleMetIleIleSerArgSe : 328 |||||||| !|||||||||!:! !! ! !..!:!!|||:!!||||||:!!! !|| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 329 : rHisMetMetThrLysIleThrAlaGlyLysValValProMetSerPheAspThrPhe : 347 |:!! ! !|||:!!||||||||||||:!! !! !||||||!!.! !!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 348 : AlaSerVal : 350 .!!..!||| ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: gi|805766378|ref|XP_012135245.1| 260 350 . KQ414889.1 206050 206401 + 159 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 159 + . gene_id 21 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 159 + . alignment_id 21 ; Query gi|805766378|ref|XP_012135245.1| ; Align 206051 261 111 ; Align 206243 298 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 233 -> 297 Target range: 264456 -> 264648 234 : AspIleMetAsnLysIleCysLeuMetGluLeuPheLysCysThrValCysIleCysT : 253 |||! ||| |||..! |||! !!:! !! !:!!! !:!!!! ! AspLysAspAsnPheCysLeuLeuGlnCysLeuSerArgAspIleIlePheVal***A 264457 : GATAAagacaatttttgtttacttcAGTGTTTGTCCAGGGATATAATATTTGTATGAA : 264514 254 : hrLeuGluTyrHisIleLeuMetGluTrpAlaAsnHisAspTyrGlnSerValThrSe : 272 .!:!! ! ! !!:!!!!!..!||||||! !!:!|||||| |||::::::|||!! snIleThrIleAspValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrTh 264515 : ATATAACAATTGACGTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTAC : 264571 273 : rPhePheLeuValLeuCysSerMetSerPheAsnMetPheIleValCysTyrIleGly : 291 !!:!|||:!!:!!||| ||||||!!! !|||!!:|||:!!:!!|||||||||||| rTyrPheMetIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGly 264572 : ATATTTCATGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGC : 264628 292 : GluLysLeuSerGluGln : 297 |||! !|||!!!|||||| GluIleLeuThrGluGln 264629 : GAGATATTGACTGAGcag : 264648 vulgar: gi|805766378|ref|XP_012135245.1| 233 297 . KQ414889.1 264456 264648 + 126 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264457 264648 126 + . gene_id 22 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264457 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264457 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264457 264648 126 + . alignment_id 22 ; Query gi|805766378|ref|XP_012135245.1| ; Align 264457 234 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 289 -> 364 Target range: 230223 -> 230448 290 : IleGlyGluLysLeuSerGluGlnCysLysSerIleGlyGluThrValTyrMetThrA : 309 ||| :::... ||| !||||||!:!!.!:!!||||||! ! !||||||! !. Ile***LysAsnAlaSerLeuGlnCysArgLysValGlyGluLysSerTyrMetIleG 230224 : atttaaaaaaatgcttcCTTACAGTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCG : 230281 310 : snTrpTyrTyrLeuProAsnLysAspIleLeuAspLeuIleMetIleIleSerArgSe : 328 !.|||||| ||| !!...!!. ! ! ||| !! !|||:!!||||||:!!! !|| luTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 230282 : AATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTC : 230338 329 : rHisMetMetThrLysIleThrAlaGlyLysValValProMetSerPheAspThrPhe : 347 |:!! !||||||.!!|||||||||!!.:!!||| !:!:||| ! :!!|||||| rAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnThrPhe 230339 : CAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACACTTTC : 230395 348 : AlaSerValIleLysThrGlyPheAlaTyrLeuAsnValLeuArgGlnThr : 364 ::!..!|||! !! ! ! !! !!.!||| !||| !! !!:! !||| SerAspValSerIleIlePheSerValTyrThrAsnProSerLysLeuThr 230396 : AGCGACGTAAGTATCATATTCTCTGTTTACACGAATCCATCGAAATTAACT : 230448 vulgar: gi|805766378|ref|XP_012135245.1| 289 364 . KQ414889.1 230223 230448 + 124 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230224 230448 124 + . gene_id 23 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230224 230448 . + . KQ414889.1 exonerate:protein2genome:local exon 230224 230448 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230224 230448 124 + . alignment_id 23 ; Query gi|805766378|ref|XP_012135245.1| ; Align 230224 290 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 260 -> 297 Target range: 277371 -> 277482 261 : GluTrpAlaAsnHisAspTyrGlnSerValThrSerPhePheLeuValLeuCysSerM : 280 ||||||:!!:!! !||| !|||!!!:!!|||!!! !|||:!!:!!||| |||| GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 281 : etSerPheAsnMetPheIleValCysTyrIleGlyGluLysLeuSerGluGln : 297 || ||||||:::||| !||||||||||||||||||! !|||!!!|||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAG : 277482 vulgar: gi|805766378|ref|XP_012135245.1| 260 297 . KQ414889.1 277371 277482 + 121 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277482 121 + . gene_id 24 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277482 121 + . alignment_id 24 ; Query gi|805766378|ref|XP_012135245.1| ; Align 277372 261 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 296 -> 353 Target range: 211770 -> 211941 297 : GlnCysLysSerIleGlyGluThrValTyrMetThrAsnTrpTyrTyrLeuProAsnL : 316 ||| !!.!:!!||||||! ! !||||||! !:!!|||||| :!!|||...| GlnThrValLysValGlyGluLysSerTyrMetIleAspTrpTyrArgMetProGlyL 211771 : CAGACAGTAAAAGTTGGAGAAAAGTCTTACATGATCGACTGGTATCGAATGCCAGGAA : 211828 317 : ysAspIleLeuAspLeuIleMetIleIleSerArgSerHisMetMetThrLysIleTh : 335 || ! !|||! !:!! !:!!!!:||||||! !|||||| !! ||||||||||| ysLysGlyLeuValValProLeuMetIleSerMetSerHisSerThrThrLysIleTh 211829 : AGAAAGGTTTGGTCGTACCCTTGATGATCTCCATGTCACATTCGACCACCAAAATCAC : 211885 336 : rAlaGlyLysValValProMetSerPheAspThrPheAlaSerValIleLysThr : 353 |||||||!!.:!!:!! !:!:|||.!!..!!:!|||!.!..!|||! ||| rAlaGlyAsnLeuIleValLeuSerIleSerSerPheGlyAspValSerValThr 211886 : CGCTGGCAATCTCATCGTTCTTTCAATCAGTAGTTTCGGTGACGTAAGtgttaca : 211941 vulgar: gi|805766378|ref|XP_012135245.1| 296 353 . KQ414889.1 211770 211941 + 118 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 211771 211941 118 + . gene_id 25 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 211771 211941 . + . KQ414889.1 exonerate:protein2genome:local exon 211771 211941 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 211771 211941 118 + . alignment_id 25 ; Query gi|805766378|ref|XP_012135245.1| ; Align 211771 297 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 297 -> 350 Target range: 301877 -> 302036 298 : CysLysSerIleGlyGluThrValTyrMetThrAsnTrpTyrTyrLeuProAsnLysA : 317 |||!....!||||||..!.!! !||| !! !:!!|||||| !!|||||| ||| CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysA 301878 : TGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGA : 301935 318 : spIleLeuAspLeuIleMetIleIleSerArgSerHisMetMetThrLysIleThrAl : 336 !! !|||||||||:!::!!! ! !! !|||!!. ! !!|||:!!||||| rgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAl 301936 : GAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGC : 301992 337 : aGlyLysValValProMetSerPheAspThrPheAlaSerVal : 350 |||||||:!!:!! !:!:|||!!.:!!||||||::!|||||| aGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301993 : AGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: gi|805766378|ref|XP_012135245.1| 297 350 . KQ414889.1 301877 302036 + 118 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301878 302036 118 + . gene_id 26 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301878 302036 118 + . alignment_id 26 ; Query gi|805766378|ref|XP_012135245.1| ; Align 301878 298 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 7 -> 80 Target range: 303283 -> 303502 8 : IleLeuIlePheValCysGlnCysCysIleLeuIleThrValLeuProCysIleLeuT : 27 ||| !||| :!! !!.!.! !:!!|||.!!||||||:!!||||||||||||: IleThrIleGlyLeuSerAsnLeuValLeuLeuPheThrValIleProCysIleLeuH 303284 : ATCACCATTGGACTCAGTAATTTGGTTCTATTATTCACCGTGATACCGTGTATTCTAC : 303341 28 : yrIleValLeuAspAspAspAspIleAlaGluLysLeuMetValValGlyProLeuSe : 46 !!|||:!!!!!!!:.!. ! |||! ! !!:!|||! :!! !!|||! !||||| isIleIlePheGluGlnLysAspThrIleIleArgLeuLysLeuPheGlyLeuLeuSe 303342 : ACATAATATTCGAACAAAAGGATACGATAATAAGATTGAAACTATTCGGTCTGCTGAG : 303398 47 : rHisTrpPheValGlyGlyCysAsnTyrThrThrLeuLeuLeuHisSerLysGluIle : 65 | !!! !!.:!!..! ! !!.||| !.!!||| ! !!..!.! !..!||| rPheCysLeuIleSerLeuMetLysTyrTrpAlaLeuAlaThrArgLysProArgIle 303399 : TTTCTGTTTGATCTCGTTGATGAAGTATTGGGCCCTCGCCACGCGGAAACCAAGGATC : 303455 66 : ArgPheCysAlaGlnGlnMetLysSerAspTrpMetThrValThr : 80 !:! ||| !:!!:!!:!!:!!|||||||||! !|||!:! LysGluCysIleGluGluValGlnSerAspTrpLysGluValSer 303456 : AAAGAATGTATAGAAGAGGTGCAAAGTGATTGGAAAGAGGTGAGT : 303502 vulgar: gi|805766378|ref|XP_012135245.1| 7 80 . KQ414889.1 303283 303502 + 112 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303284 303502 112 + . gene_id 27 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 303284 303502 . + . KQ414889.1 exonerate:protein2genome:local exon 303284 303502 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303284 303502 112 + . alignment_id 27 ; Query gi|805766378|ref|XP_012135245.1| ; Align 303284 8 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1018 Query range: 19 -> 410 Target range: 256646 -> 258738 20 : SerAspTyrSerLeuGlnLeuAsnArgTrpLeuLeuLysProIleGlyValTrpProL : 39 ||||||||||||||||||||||||||||||!!!|||||||||||||||!.!|||||| SerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProP 256647 : AGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCAC : 256704 40 : ysSerPheTyrThrSerAsnIleGluLysIleValSerLeuIleSerAsnMetIleCy : 58 |||! ! !|||!!!!.!:!!|||::!! !||||||:!!:!!! !|||!!::!!|| roSerSerSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCy 256705 : CCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTG : 256761 59 : sTyrCysSerIleValIleThrValValProCysIleLeuHisLeuThrPheGluAsp : 77 |||| !!||||||:!!.!!|||:!!:!!||||||:!:||||||:!! !.!!!!:||| sTyrGlySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAsp 256762 : CTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGAC : 256818 78 : IleAspPheArgThrLysLeuLysValPheGlyProMetThrHisTrpPheAlaGlyG : 97 !..!||| |||:::||| ||||||||||||!:!||||||.!! !.!! AspSerPheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerC 256819 : GACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCT : 256878 98 : lyIleAsnTyrThrThrLeuLeuValArgGlyGluGluIleArgHisCysMetLysGl : 116 !! !||||||||| !||||||:!!!:!|||:!!!!:||||||:!!|||:!::!!!! ysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHi 256879 : GTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCA : 256935 117 : nMetGlnAsnAspTrpArgThrValSerSerProGluValGlnGlnValMetLeuLys : 135 .!!::!!!..|||||||||! !|||!!!!!! !:!!! !||||||||||||:!!||| sIleGluThrAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLys 256936 : TATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAG : 256992 136 : AspAlaLysPheGlyArgAsnMetAlaThrPheCysThrValPheMetGlnGlyGlyV : 155 :!!|||!:!||||||||| !!:!!||||||||||||.!!!.!.!!||||||.!!|||| AsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyV 256993 : AACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCg : 257052 156 : alLeuCysTyrCysAlaAlaMetAlaLeuThrLysGluIleValGlnValGlyAsnGl : 174 ||...|||::: ..!:!! !||||||!.!! !||||||:!!!!.||||||||||| alPheCysPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGl 257053 : ttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGA : 257109 175 : uThrArgThrIleHisThrLeuProIleAlaValTyrLysLysLeuIleProValAsp : 193 ||||! !! !:!:!....!||||||:!!.!!|||||||||||||||:!: !|||||| uThrThrIleValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAsp 257110 : AACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGAT : 257166 194 : ThrSerProThrAsnGluIleValLeuAlaValGlnValLeuAlaAlaIleIleValA : 213 !|||||||||||||||||||||:!! !:!!|||..!! !:!!:!!||||||!.!! GlnSerProThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaT 257167 : CAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGA : 257226 214 : snCysThrValValGlyAlaPheSerLeuAlaIleValPheAlaAlaHisAlaHisGl : 232 .! !!:!..!|||.!! !|||||||||||| !|||||||||.!!||||||:!!|| hrThrSerThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGl 257227 : CTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGG : 257283 233 : yGlnLeuAspValLeuAsnMetTrpIleThrGluPheValAspGlnSerArgAsnSer : 251 ||||||| !||||||! !||||||||||||||||||:!!:!!||||||||| ! yGlnLeuThrValLeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArg 257284 : TCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGg : 257340 252 : SerLysLysValArgTrpAsnGlyIleGlyValPheValAsnAsnHisThrAsnValL : 271 ...||| :::!!. !|||||||||.!!|||.!.:!!||| !!..|||| GluLysThrPheProPheLysGlnIleGlyValIleValGluHisHisLeuArgValL 257341 : gagaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGC : 257400 272 : eu{Se} >>>> Target Intron 1 >>>> {r}PheIleGluHisIleGluHi : 279 ||{||} 756 bp {|} !:!:...:!!:!! ! ! eu{Se}++ -+{r}HisValArgTyrValProLy 257401 : TG{AG}gt.........................cg{C}CACGTGCGTTATGTACCGAA : 258180 280 : sValMetAsnValIleCysPheThrGluLeuCysGlnCysThrMetSerIleCysPhe : 298 !:!: ..!! !!! !!.! !..!! ! |||! ! ! !! ! ... sProValAlaThrLysTrpLeuLysSerTyrLeuGln***PheSerTyrThrGlnLeu 258181 : ACCTGTTGCAACAAAATGGTTAAAATCGTACCTACAATAATTTTCCTATACACAGcta : 258237 299 : LeuCysTyrTyrIleLeu----ThrGluTrpHisGluHisAspIleHisAsnLeuThr : 316 ...||||||::::::|||#### |||||| ! !!..||||||...||||||::: PheCysTyrPheLeuLeu####GlnGluTrpSerThrGlnAspIleGlnAsnLeuSer 258238 : ttctgttattttttattattttcaggaATGGTCTACGCaagatattcaaaatttgagt : 258295 317 : ThrTyrValIleIleLeuValSerValThrPheAsnValPheIleMetCysTyrValG : 336 :::||| !!!!:||||||:!!|||::::::||||||:::|||::::::||||||:!!| SerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleG 258296 : tcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaatatgttACATAG : 258355 337 : lyGluLeuLeuThrLysGln >>>> Target Intron 2 >>>> CysAsnArg : 345 |||||:!!||||||:!!||| 90 bp |||!!.!:! lyGluIleLeuThrGluGln++ ++CysLysLys 258356 : GTGAAATATTAACAGAACAGgt.........................agTGCAAGAAA : 258472 346 : IleAlaAspValIleTyrSerThrAsnTrpTyrTyrLeuProCysLysAsnValLeuA : 365 :!!!.!||||||:!!|||! !|||:!!||||||||||||||| !|||!..:!!|||| ValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuA 258473 : GTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCG : 258532 366 : spLeuThrValIleIleThrArgSerSerMetValThrLysIleThrAlaGlyLysIl : 384 |||||! !:!!:!!|||.!!|||||||||:!!|||..!:!!|||||||||||||||.. spLeuIleLeuValIleAlaArgSerSerValValValGlnIleThrAlaGlyLysPh 258533 : ATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaatt : 258589 385 : eIleTyrMetSerMetTyrThrPheGlyAla >>>> Target Intron 3 >>>> : 395 ....:::||||||!!:|||||||||.!!! ! 69 bp ePheHisMetSerIleTyrThrPheSerAsp++ 258590 : ctttcacatGTCCATTTACACATTCAGCGATgt......................... : 258624 396 : ValLeuLysThrSerPheThrTyrLeuAsnIleLeuArgGlnMetThr : 410 |||:!!||||||||||||.!!|||||||||:!!|||||||||:!::!! ++ValIleLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnValSer 258625 : agGTAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGTATCG : 258738 vulgar: gi|805766386|ref|XP_003700842.2| 19 410 . KQ414889.1 256646 258738 + 1018 M 252 756 S 0 2 5 0 2 I 0 752 3 0 2 S 1 1 M 32 96 F 0 4 M 38 114 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256647 258738 1018 + . gene_id 1 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256647 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256647 257404 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 258160 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258159 258160 . + . intron_id 0 ; splice_site "CG" KQ414889.1 exonerate:protein2genome:local cds 258161 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258161 258375 . + . insertions 0 ; deletions 0 ; frameshifts 4 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256647 258738 1018 + . alignment_id 1 ; Query gi|805766386|ref|XP_003700842.2| ; Align 256647 20 756 ; Align 258162 273 96 ; Align 258262 305 114 ; Align 258466 343 156 ; Align 258691 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 964 Query range: 19 -> 372 Target range: 259766 -> 262015 20 : SerAspTyrSerLeuGlnLeuAsnArgTrpLeuLeuLysProIleGlyValTrpProL : 39 ||||||||||||||||||!!!|||||||||!!!|||||||||||||||!.!|||||| SerAspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProP 259767 : AGTGACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCAC : 259824 40 : ysSerPheTyrThrSerAsnIleGluLysIleValSerLeuIleSerAsnMetIleCy : 58 |||! !! !|||!!!!..:!!|||||||||:!!|||:!!||| !! !.!.||||| roSerSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCy 259825 : CTTCATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTG : 259881 59 : sTyrCysSerIleValIleThrValValProCysIleLeuHisLeuThrPheGluAsp : 77 |||| !!!!!|||:!!:!!|||:!!:!!||||||:!!||||||:!! !.!!||| ! sTyrSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLys 259882 : CTACAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAG : 259938 78 : IleAspPheArgThrLysLeuLysValPheGlyProMetThrHisTrpPheAlaGlyG : 97 ..!!!. !! !||| !||||||.!!||||||:!:||||||||||||!.!||| GluSerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyC 259939 : GAGAGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCT : 259998 98 : lyIleAsnTyrThrThrLeuLeuValArgGlyGluGluIleArgHisCysMetLysGl : 116 !!|||||||||||||||||||||:!!||||||..!!!:|||! ! !|||:!!:!!!! ysIleAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHi 259999 : GTATTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACA : 260055 117 : nMetGlnAsnAspTrpArgThrValSerSerProGluValGlnGlnValMetLeuLys : 135 .:!!:!!||||||||||||! !:!!!!!!!! !:!!! !|||.!.|||||||||!:! sValGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArg 260056 : CGTGGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGA : 260112 136 : AspAlaLysPheGlyArgAsnMetAlaThrPheCysThrValPheMetGlnGlyGlyV : 155 !!||||||||||||||| !!:!:|||.!!! !|||.!!!.!|||:!!|||||||||| TyrAlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyV 260113 : TACGCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAG : 260172 156 : alLeuCysTyrCysAlaAlaMetAlaLeuThrLysGluIleValGlnValGlyAsnGl : 174 ||||||||!:!||| !!.!! !!.!|||!:!! !|||:!::!!|||||||||||||| alLeuCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGl 260173 : TTCTGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGA : 260229 175 : uThrArgThrIleHisThrLeuProIleAlaValTyrLysLysLeuIleProValAsp : 193 |||||||! !:!!||| !|||||| !||||||||||||:!!|||||| !|||:!! uThrArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsn 260230 : GACGAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAAC : 260286 194 : ThrSerProThrAsnGluIleValLeuAlaValGlnValLeuAlaAlaIleIleValA : 213 !||||||! !|||||||||||||||!.!|||||| !!:!!:!!!.!.!!||||||| AspSerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValA 260287 : GACAGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGA : 260346 214 : snCysThrValValGlyAlaPheSerLeuAlaIleValPheAlaAlaHisAlaHisGl : 232 ||! !:!..!|||||| !|||||||||||| !|||.!..!!||||||||| !|| snSerSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGl 260347 : ATTCGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGG : 260403 233 : yGlnLeuAspValLeuAsnMetTrpIleThrGluPheValAspGlnSerArgAsnSer : 251 |||||||:!!||||||! |||||||||||||||||||||:!!|||||||||!!! yGlnLeuAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArg 260404 : CCAGTTGAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGG : 260460 252 : SerLysLysValArgTrpAsnGlyIleGlyValPheValAsnAsnHisThrAsnValL : 271 !.!||||||!.!! !!::!!.! !|||||||||.!!|||.!.:!!||| !!..!.!| LysLysLysAlaProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaL 260461 : AAGAAAAAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCAC : 260520 272 : eu{Se} >>>> Target Intron 1 >>>> {r}PheIleGluHisIleGluHi : 279 ||{!!} 1112 bp {!} !:!!||| ! !..!!! eu{Th}++ -+{r}AlaLeuGlu***ArgArgGl 260521 : TC{AC}gt.........................cg{G}GCCTTAGAATAACGCAGGCA : 261656 280 : sValMetAsnValIleCysPheThrGluLeuCysGlnCysThrMetSerIleCysPhe : 298 . ! !.. !! ! !!:!!:! ! !|||.!.|||..!!!: |||! !||| nArgProThrPheTyrAspTyrSerTyrAspCysAsnCysValIle---IlePhePhe 261657 : AAGGCCAACATTTTACGATTACAGTTACGATTGCAATTGTGTAATA---ATCTTTTTc : 261710 299 : LeuCysTyrTyrIleLeuThrGluTrpHisGluHisAspIleHisAsnLeuThrThrT : 318 :::::::::||| |||||| !|||!!.||||||!!.||||||:!!|||| ***TyrPhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrT 261711 : tgatatttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGT : 261770 319 : yrValIleIleLeuValSerValThrPheAsnValPheIleMetCysTyrValGlyGl : 337 || !!!!:!!:|||:!!:!!:!! !|||||||||||||||!!:||||||:!!||||| yrPheMetMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGl 261771 : ATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGA : 261827 338 : uLeuLeuThrLysGln >>>> Target Intron 2 >>>> CysAsnArgIleA : 347 |:!!||||||:!!||| 81 bp |||:::!:!:!!! uIleLeuThrGluGln++ ++CysSerLysValG 261828 : AATACTAACGGAACAGgt.........................agTGCTCGAAAGTTG : 261938 348 : laAspValIleTyrSerThrAsnTrpTyrTyrLeuProCysLysAsnValLeuAspLe : 366 .!||||||:!!|||! !||||||||||||||||||||| !|||!:!:!!|||||||| lyAspValValTyrMetThrAsnTrpTyrTyrLeuProAspLysSerIleLeuAspLe 261939 : GTGACGTTGTTTACATGACAAACTGGTATTATTTACCTGATAAAAGTATCCTTGATTT : 261995 367 : uThrValIleIleThrArg : 372 |! !:!!||||||.!!||| uIleLeuIleIleAlaArg 261996 : GATTTTGATCATTGCACGA : 262015 vulgar: gi|805766386|ref|XP_003700842.2| 19 372 . KQ414889.1 259766 262015 + 964 M 252 756 S 0 2 5 0 2 I 0 1108 3 0 2 S 1 1 M 22 66 G 1 0 M 47 141 5 0 2 I 0 77 3 0 2 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259767 262015 964 + . gene_id 2 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259767 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259767 260524 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 261636 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261635 261636 . + . intron_id 0 ; splice_site "CG" KQ414889.1 exonerate:protein2genome:local cds 261637 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261637 261844 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262015 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262015 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259767 262015 964 + . alignment_id 2 ; Query gi|805766386|ref|XP_003700842.2| ; Align 259767 20 756 ; Align 261638 273 66 ; Align 261704 296 141 ; Align 261926 343 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 954 Query range: 7 -> 305 Target range: 266595 -> 267558 8 : GlnLysPheIleSerGlnLysGluLeuAspGlyLeuSerAspTyrSerLeuGlnLeuA : 27 :!!..!!!.:!!! !:!! !.!.|||:!!.!!||||||||||||||||||||||||| GluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerLeuGlnLeuA 266596 : GAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCCTGCAATTGA : 266653 28 : snArgTrpLeuLeuLysProIleGlyValTrpProLysSerPheTyrThrSerAsnIl : 46 ||||||||!!!|||||||||||||||!.!|||||| !! !! !||||||!!.:! snArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuThrSerLysLe 266654 : ATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCACATCTAAACT : 266710 47 : eGluLysIleValSerLeuIleSerAsnMetIleCysTyrCysSerIleValIleThr : 65 !|||::!|||||||||! ! !! !! !:!:||||||||||||||||||:!!.!!||| uGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIleLeuPheThr 266711 : CGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATACTGTTCACC : 266767 66 : ValValProCysIleLeuHisLeuThrPheGluAspIleAspPheArgThrLysLeuL : 85 |||:!!||||||:!:!!!||||||..!.!.|||||| ..!.!!|||||||||:!!| ValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgThrLysValL 266768 : GTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTACGAAAGTGA : 266827 86 : ysValPheGlyProMetThrHisTrpPheAlaGlyGlyIleAsnTyrThrThrLeuLe : 104 ||||||||||||||:!!!:!|||||||||!.!|||||||||||||||||||||||||| ysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrThrThrLeuLe 266828 : AGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACACCACACTGTT : 266884 105 : uValArgGlyGluGluIleArgHisCysMetLysGlnMetGlnAsnAspTrpArgThr : 123 |:!!|||.!!:!!||||||||| !|||:!::!!!!.||||||!..|||||||||! ! uLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIle 266885 : GCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGATTGGAGGATC : 266941 124 : ValSerSerProGluValGlnGlnValMetLeuLysAspAlaLysPheGlyArgAsnM : 143 |||!!!!!!||||||! !:!!|||||||||||||||:!!|||!:!.!!|||||| !!! ValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleGlyArgTyrI 266942 : GTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCGGTCGTTACA : 267001 144 : etAlaThrPheCysThrValPheMetGlnGlyGlyValLeuCysTyrCysAlaAlaMe : 162 !:|||! !||||||.!!!.!||||||||| !!||||||||| !!||||||!.! !! leAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCysValIleTh 267002 : TTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGTGATAAC : 267058 163 : tAlaLeuThrLysGluIleValGlnValGlyAsnGluThrArgThrIleHisThrLeu : 181 !|||!!!|||! !:!!! !|||:!!||||||||||||||||||! !:!!||| !||| rAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleValHisLeuLeu 267059 : GGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTACATCTGTTG : 267115 182 : ProIleAlaValTyrLysLysLeuIleProValAspThrSerProThrAsnGluIleV : 201 ||| !|||||||||||||||:!!||| !!|||||||||||||||||||||||||||| ProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrAsnGluIleV 267116 : CCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGAACGAGATTG : 267175 202 : alLeuAlaValGlnValLeuAlaAlaIleIleValAsnCysThrValValGlyAlaPh : 220 |||||!.! !||| !!:!!:!!!.!.!!|||||||||! !:!|||||||||||||| alLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValValGlyAlaPh 267176 : TCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCGGTGCTTT : 267232 221 : eSerLeuAlaIleValPheAlaAlaHisAlaHisGlyGlnLeuAspValLeuAsnMet : 239 |||||||||| !|||||||||||||||||| !|||||||||..!||||||! ||| eSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerValLeuMetMet 267233 : CAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTGATGATG : 267289 240 : TrpIleThrGluPheValAspGlnSerArgAsnSerSerLysLysValArgTrpAsnG : 259 ||||||! !|||||||||:!!!:!||||||:!!|||!:!|||!!.||| !!!:::!! TrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValCysPheAspL 267290 : TGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTTGCTTCGATA : 267349 260 : lyIleGlyValPheValAsnAsnHisThrAsnValLeu{Se} >>>> Target In : 272 !||||||||| !!|||.!.:!!||| !!..||||||{||} 69 b ysIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 267350 : AGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG}gt.............. : 267392 273 : tron 1 >>>> {r}PheIleGluHisIleGluHisValMetAsnValIleCysPhe : 286 p {|}||||||! !!.!|||||| !||||||!:!! !||||||||| ++{r}PheIleAlaArgIleGluSerValMetSerGluIleCysPhe 267393 : ...........ag{C}TTCATAGCACGTATCGAAAGTGTAATGAGCGAAATTTGCTTC : 267499 287 : ThrGluLeuCysGlnCysThrMetSerIleCysPheLeuCysTyrTyrIleLeuThr : 305 ! !||||||! !:!!|||||||||..!|||||| ! ||| !!||||||||||||||| MetGluLeuPheLysCysThrMetAspIleCysValLeuSerTyrTyrIleLeuThr 267500 : ATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCTATTATATCCTTACG : 267558 vulgar: gi|805766386|ref|XP_003700842.2| 7 305 . KQ414889.1 266595 267558 + 954 M 264 792 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266596 267558 954 + . gene_id 3 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266596 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266596 267389 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267558 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267558 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266596 267558 954 + . alignment_id 3 ; Query gi|805766386|ref|XP_003700842.2| ; Align 266596 8 792 ; Align 267460 273 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 810 Query range: 14 -> 271 Target range: 274362 -> 275133 15 : GluLeuAspGlyLeuSerAspTyrSerLeuGlnLeuAsnArgTrpLeuLeuLysProI : 34 .!.!!!|||.!!|||||||||||||||||||||||||||||||||!!!|||||||||| AsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 274363 : AATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTA : 274420 35 : leGlyValTrpProLysSerPheTyrThrSerAsnIleGluLysIleValSerLeuIl : 53 |||||!.!|||||| !:!!! !|||!!!!!..!!|||::!|||:!!|||! !:: leGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLeuSerHisLe 274421 : TAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCt : 274477 54 : eSerAsnMetIleCysTyrCysSerIleValIleThrValValProCysIleLeuHis : 72 : ...:::|||||||||! !|||:!! !||||||:!!||| !!|||!!!||| uLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIlePheHis 274478 : tttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCAC : 274534 73 : LeuThrPheGluAspIleAspPheArgThrLysLeuLysValPheGlyProMetThrH : 92 :!!! !.!.! !||| !..!.!!!.! !|||||||||:!!.!!||||||:!: !| IleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyH 274535 : ATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTC : 274594 93 : isTrpPheAlaGlyGlyIleAsnTyrThrThrLeuLeuValArgGlyGluGluIleAr : 111 |||||||| !|||||||||||||||||||||||||||:!!|||.!!:!!|||||||| isTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleAr 274595 : ACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACG : 274651 112 : gHisCysMetLysGlnMetGlnAsnAspTrpArgThrValSerSerProGluValGln : 130 | !|||:!!:!!!!.||||||!..|||||||||! !|||!!!!!!||||||! !||| gGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAspGln 274652 : CGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAA : 274708 131 : GlnValMetLeuLysAspAlaLysPheGlyArgAsnMetAlaThrPheCysThrValP : 150 |||||||||||||||:!!||||||.!!|||||| !!:!:|||! !||||||.!!!.!| GlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaP 274709 : CAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGT : 274768 151 : heMetGlnGlyGlyValLeuCysTyrCysAlaAlaMetAlaLeuThrLysGluIleVa : 169 |||||||| !!||||||||||||||||||!.! !! |||!!!|||! !:!!! !|| heMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGlnThrVa 274769 : TCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGT : 274825 170 : lGlnValGlyAsnGluThrArgThrIleHisThrLeuProIleAlaValTyrLysLys : 188 |||||||||||||||||||||||||:!:|||! !|||||| ! !!.!||||||||| lGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLysLys 274826 : TCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAG : 274882 189 : LeuIleProValAspThrSerProThrAsnGluIleValLeuAlaValGlnValLeuA : 208 :!!:!! !!|||||||||||||||||||||||||||||||||||| !||| !!:!!: IleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnPheValS 274883 : ATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGT : 274942 209 : laAlaIleIleValAsnCysThrValValGlyAlaPheSerLeuAlaIleValPheAl : 227 !!!.!.!!|||||||||! !:!!.!||||||||||||||||||||| !|||||||| erGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAl 274943 : CGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGC : 274999 228 : aAlaHisAlaHisGlyGlnLeuAspValLeuAsnMetTrpIleThrGluPheValAsp : 246 ||||||||||:!!|||||||||..!||||||! !!:||||||||||||||||||:!! aAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheValAsn 275000 : GGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAAT : 275056 247 : GlnSerArgAsnSerSerLysLysValArgTrpAsnGlyIleGlyValPheValAsnA : 266 !!.||||||:!:...:::|||...||| :::::!! !||||||||| !!|||.!.: HisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValValValGluH 275057 : CATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAAC : 275116 267 : snHisThrAsnValLeu : 271 !!||| !!..|||||| isHisLeuArgValLeu 275117 : ATCATCTGAGGGTACTC : 275133 vulgar: gi|805766386|ref|XP_003700842.2| 14 271 . KQ414889.1 274362 275133 + 810 M 257 771 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274363 275133 810 + . gene_id 4 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274363 275133 . + . KQ414889.1 exonerate:protein2genome:local exon 274363 275133 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274363 275133 810 + . alignment_id 4 ; Query gi|805766386|ref|XP_003700842.2| ; Align 274363 15 771 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 756 Query range: 20 -> 395 Target range: 232456 -> 235147 21 : AspTyrSerLeuGlnLeuAsnArgTrpLeuLeuLysProIleGlyValTrpProLysS : 40 !!:||||||:!!|||:!!|||||||||!!!|||! !|||!!:|||!.!||||||::: GluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgV 232457 : GAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTG : 232514 41 : erPheTyrThrSerAsnIleGluLysIleValSerLeuIleSerAsnMetIleCysTy : 59 ! ! ||||||!.. !:!!:!!:!!:!!:!! !:!:! !!..:!:! !|||:! alThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHi 232515 : TTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCA : 232571 60 : rCysSerIleValIleThrValValProCysIleLeuHisLeuThrPheGluAspIle : 78 !! ! !!!::!! !:!!:!!||||||||||||||| !:!! !|||||||||! sSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThr 232572 : TTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACG : 232628 79 : AspPheArgThrLysLeuLysValPheGlyProMetThrHisTrpPheAlaGlyGlyI : 98 ..!.!...! !!:!:!!||| !.!!|||||||||!:!|||!::.!. !|||! !: SerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluL 232629 : AGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAAT : 232688 99 : leAsnTyrThrThrLeuLeuValArgGlyGluGluIleArgHisCysMetLysGlnMe : 117 !:|||||| ! !||||||!.!!:!!.!.!.!!:|||! !:!!|||:!!:!!|||:! euAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnVa 232689 : TGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGT : 232745 118 : tGlnAsnAspTrpArgThrValSerSerProGluValGlnGlnValMetLeuLysAsp : 136 !:!!.!.|||||||||!.!|||!.!!.!|||! !!::.!.:!!|||||||||:!! lLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsn 232746 : GAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAAC : 232802 137 : AlaLysPheGlyArgAsnMetAlaThrPheCysThrValPheMetGlnGlyGlyValL : 156 ||||||.!!||||||:::!!:||| !.!!..!.!! !!! !|||!!. !|||||| AlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValG 232803 : GCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCG : 232862 157 : euCysTyrCysAlaAlaMetAlaLeuThrLysGluIleValGlnValGlyAsnGluTh : 175 !! ! !! !!.!! !.!||| !! !...! !! ! ||||||||||||!: lySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSe 232863 : GCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAG : 232919 176 : rArgThrIleHisThrLeuProIleAlaValTyrLysLysLeuIleProValAspThr : 194 ! !:!!!!::!! !!|||||| !.!! !!|||! !||||||!!: !..! ! rTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPhe 232920 : TTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTC : 232976 195 : SerProThrAsnGluIleValLeuAlaValGlnValLeuAlaAlaIleIleValAsnC : 214 ||||||||||||||||||:!!!!!!.!:!!||| !|||:!!!.!.!!|||||||||! SerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnS 232977 : AGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACT : 233036 215 : ysThrValValGlyAlaPheSerLeuAlaIleValPheAlaAlaHisAlaHisGlyGl : 233 !..!..!|||||||||! !.!!|||!.! !|||.!.||| !|||||| !||||| erValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGl 233037 : CCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACA : 233093 234 : nLeuAspValLeuAsnMetTrpIleThrGluPheValAspGlnSerArgAsnSerSer : 252 ||||:!!|||:!!! ! :!: !!!:!!.|||||| :!!!:!.....!..! nLeuAsnValValMetSerLysLeuAspAspLeuValAsp---AlaLysGlyGlnGlu 233094 : GCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGAC---GCGAAAGGGCAGGAG : 233147 253 : LysLysValArgTrpAsnGlyIleGlyValPheValAsnAsnHisThrAsnValLeu{ : 272 :!!!:!||| ! !!.. !:!!||| !!.!!|||.!.:!!||| !..!..!|||{ GluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeu{ 233148 : GAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTA{ : 233207 273 : Se} >>>> Target Intron 1 >>>> {r}PheIleGluHisIleGluHisVa : 280 ||} 1315 bp {|}||||||..!:!!||||||:!!|| Se}++ ++{r}PheIleArgAsnIleGluAsnVa 233208 : AG}gt.........................ag{T}TTTATACGGAATATAGAGAACGT : 234546 281 : lMetAsnValIleCysPheThrGluLeuCysGlnCysThrMetSerIleCysPheLeu : 299 |||||||:!!||||||.!...!|||||| !||||||:!!!:!!!:|||.!.||| lMetAsnLeuIleCysLeuValGluLeuValGlyCysThrLeuAsnMetCysMetLeu 234547 : TATGAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACGTTGAACATGTGCATGCTC : 234603 300 : CysTyrTyrIleLeuThr >>>> Target Intron 2 >>>> GluTrpHisGl : 309 ||||||:!!|||||| 189 bp ||| :: GluTyrTyrLeuLeuThr++ ++GluLysSerLy 234604 : GAGTATTATTTACTCACGgt.........................agGAAAAgtcgaa : 234822 310 : uHisAspIleHisAsnLeuThrThrTyrValIleIleLeuValSerValThrPheAsn : 328 : ......|||.!!:!!|||||||||:!:! !||||||:!!||||||||| s---------GluLysLeuAlaSerTyrValIleValTyrValSerMetThrPheAsn 234823 : g---------gaaaaattagCTTCATACGTCATCGTGTACGTGTCCATGACATTtaat : 234870 329 : ValPheIleMetCysTyrValGlyGluLeuLeuThrLysGln >>>> Target In : 343 :::||||||...||||||:!!|||||| !||||||:!!||| 74 b IlePheIlePheCysTyrIleGlyGluThrLeuThrGluGln++ 234871 : atattcatattttgttACATCGGAGAGACGCTTACAGAGCAGgt.............. : 234917 344 : tron 3 >>>> CysAsnArgIleAlaAspValIleTyrSerThrAsnTrpTyrTyr : 357 p |||!.!!:!:!!!.!!!: !:!:|||! !|||.!.|||||| ++CysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArg 234918 : ...........agTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGG : 235031 358 : LeuProCysLysAsnValLeuAspLeuThrValIleIleThrArgSerSerMetValT : 377 |||||| !|||!.!!.!|||! !|||..!:!!||||||:!!|||||||||||||||! LeuProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValI 235032 : TTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGA : 235091 378 : hrLysIleThrAlaGlyLysIleIleTyrMetSerMetTyrThrPheGlyAlaVal : 395 !||||||||||||||||||.!!:!! ! ||||||:!: |||||||||! !||| leLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235092 : TAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: gi|805766386|ref|XP_003700842.2| 20 395 . KQ414889.1 232456 235147 + 756 M 226 678 G 1 0 M 24 72 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 33 99 5 0 2 I 0 185 3 0 2 M 4 12 G 3 0 M 30 90 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232457 235147 756 + . gene_id 5 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232457 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232457 233208 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232457 235147 756 + . alignment_id 5 ; Query gi|805766386|ref|XP_003700842.2| ; Align 232457 21 678 ; Align 233135 248 72 ; Align 234525 273 99 ; Align 234813 306 12 ; Align 234825 313 90 ; Align 234989 343 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 703 Query range: 13 -> 271 Target range: 262825 -> 263599 14 : LysGluLeuAspGlyLeuSerAspTyrSerLeuGlnLeuAsnArgTrpLeuLeuLysP : 33 :!!...!!!! !.!!|||||||||||||||||||||:!!||||||||||||||||||| GluSerPheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysP 262826 : GAAAGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAAC : 262883 34 : roIleGlyValTrpProLysSerPheTyrThrSerAsnIleGluLysIleValSerLe : 52 ||||||||!.!|||||| !||| !! ! !|||!..!!:|||::!|||:!!!!!!! roIleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPh 262884 : CGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTT : 262940 53 : uIleSerAsnMetIleCysTyrCysSerIleValIleThrValValProCysIleLeu : 71 !:!!! !! !:!::!!||||||||| !|||:!! !||||||:!!|||! !|||||| eLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeu 262941 : TCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTT : 262997 72 : HisLeuThrPheGluAspIleAspPheArgThrLysLeuLysValPheGlyProMetT : 91 |||:!!..!.!.|||! ! :!!|||!.!! !||||||:!!|||.!!||||||:!: HisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuG 262998 : CATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCG : 263057 92 : hrHisTrpPheAlaGlyGlyIleAsnTyrThrThrLeuLeuValArgGlyGluGluIl : 110 !!!.||||||!.!||| !|||||||||||| !||||||:!!!.!.!!:!!!!:|| lyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIl 263058 : GTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATAT : 263114 111 : eArgHisCysMetLysGlnMetGlnAsnAspTrpArgThrValSerSerProGluVal : 129 |!:! !|||:!!:!!!!.:!!|||.!.|||||| !!! !|||!!!!!! !|||! ! eGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAsp 263115 : ACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGAT : 263171 130 : GlnGlnValMetLeuLysAspAlaLysPheGlyArgAsnMetAlaThrPheCysThrV : 149 |||!:::!!|||||||||:!!||||||!:!|||||| !!:!!|||.!!! !|||.!!: GlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaI 263172 : CAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGA : 263231 150 : alPheMetGlnGlyGlyValLeuCysTyrCysAlaAlaMetAlaLeuThrLysGluIl : 168 !!||||||||| !.!!:!!:!!||| ! ||| !!.!! |||!!!|||! !:!!:! lePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnVa 263232 : TCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGT : 263288 169 : eValGlnValGlyAsnGluThrArgThrIleHisThrLeuProIleAlaValTyrLys : 187 ::!!:!!! !|||||||||||||||! !:!!!.!! !|||||| ! !!||||||||| lIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLys 263289 : GATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAA : 263345 188 : LysLeuIleProValAspThrSerProThrAsnGluIleValLeuAlaValGlnValL : 207 :!!:!!|||||||||||||||!:!||||||||||||||| !!||||||..!||| !!| GluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheL 263346 : GAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTC : 263405 208 : euAlaAlaIleIleValAsnCysThrValValGlyAlaPheSerLeuAlaIleValPh : 226 ||:!!!.!.!!||||||!.!...|||..!||||||||||||.!!:!!.!! ||||| euSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPh 263406 : TGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTT : 263462 227 : eAlaAlaHisAlaHisGlyGlnLeuAspValLeuAsnMetTrpIleThrGluPheVal : 245 ||||!.!|||||| !|||||||||:!!||||||! |||||||||||||||||| eAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheVal 263463 : CGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTG : 263519 246 : AspGlnSerArgAsnSerSerLysLysValArgTrpAsnGlyIleGlyValPheValA : 265 :!!|||||||||:!!..!!:!|||!!.:!! !!::!.!! !|||||||||.!!|||. AsnGlnSerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValG 263520 : AACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTG : 263579 266 : snAsnHisThrAsnValLeu : 271 !.:!!||| !!..|||||| luHisHisLeuArgValLeu 263580 : AACATCATCTGAGAGTTCTG : 263599 vulgar: gi|805766386|ref|XP_003700842.2| 13 271 . KQ414889.1 262825 263599 + 703 M 258 774 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262826 263599 703 + . gene_id 6 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262826 263599 . + . KQ414889.1 exonerate:protein2genome:local exon 262826 263599 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262826 263599 703 + . alignment_id 6 ; Query gi|805766386|ref|XP_003700842.2| ; Align 262826 14 774 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 557 Query range: 10 -> 271 Target range: 236819 -> 237596 11 : IleSerGlnLysGluLeuAspGlyLeuSerAspTyrSerLeuGlnLeuAsnArgTrpL : 30 :!!!!!:!!! .!.:!! !!.! !||||||||||||||||||! !||||||||| ValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpA 236820 : GTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGG : 236877 31 : euLeuLysProIleGlyValTrpProLysSerPheTyrThrSerAsnIleGluLysIl : 49 !:!!||| !||||||..!||||||:!! !:!:!!||||||:!!|||!:!! laMetLysSerIleGlyThrTrpProGln------PheSerSerAsnLeuGluArgAs 236878 : CGATGAAAAGCATAGGCACATGGCCACAG------TTCTCGTCGAACCTCGAGAGAAA : 236928 50 : eValSerLeuIleSerAsnMetIleCysTyrCysSerIleValIleThrValValPro : 68 !:!!|||! !|||! !|||:!!||||||||| !:!!|||:!!.!!:!!:!!:!!||| nIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIlePro 236929 : CATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCT : 236985 69 : CysIleLeuHisLeuThrPheGluAspIleAspPheArgThrLysLeuLysValPheG : 88 ||| |||||||||! !.!.||| ! !||| !||||||:!!|||:!!.!!| CysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuG 236986 : TGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCG : 237045 89 : lyProMetThrHisTrpPheAlaGlyGlyIleAsnTyrThrThrLeuLeuValArgGl : 107 || !!:!!!:!|||||| ! ! !! !|||!:!||||||! !||||||:!!||| ! lySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgAr 237046 : GTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACG : 237102 108 : yGluGluIleArgHisCysMetLysGlnMetGlnAsnAspTrpArgThrValSerSer : 126 !:!! |||||||||! !.!.!!.!!.|||:!!!.!||||||||||||..!::: gLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrThrArg 237103 : TAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGacgaga : 237159 127 : ProGluValGlnGlnValMetLeuLysAspAlaLysPheGlyArgAsnMetAlaThrP : 146 ||| ::::::|||||||||||| !!|||||||||.!!||| !! !|||! !! LysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleS 237160 : aaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTT : 237219 147 : heCysThrValPheMetGlnGlyGlyValLeuCysTyrCysAlaAlaMetAlaLeuTh : 165 !||||||:!!|||!!:!!.||||||:!!||| ! ||||||!.! !! |||! !|| erCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaSerTh 237220 : CTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTCCAC : 237276 166 : rLysGluIleValGlnValGlyAsnGluThrArgThrIleHisThrLeuProIleAla : 184 |! ! !:!!||| !|||||||||:!!|||! !! !:!:!.!..!||||||:!! !! rThrMetValValValValGlyAsnLysThrThrIleLeuArgValLeuProLeuPro 237277 : CACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGCGTGCTGCCCTTACCA : 237333 185 : ValTyrLysLysLeuIleProValAspThrSerProThrAsnGluIleValLeuAlaV : 204 :!!|||||| !|||:!!||||||||||||!:! !!! !|||!!:||||||:!! ! MetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnAspIleValValLeuS 237334 : ATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGACATCGTTGTTTTGT : 237393 205 : alGlnValLeuAlaAlaIleIleValAsnCysThrValValGlyAlaPheSerLeuAl : 223 !||| !!|||:!!!.!.!!|||!.!||| !!:!!.!:!!.!!!.!.!.||||||.! erGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSerValIleSerLeuTh 237394 : CACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAGTGTTATAAGCCTTAC : 237450 224 : aIleValPheAlaAlaHisAlaHisGlyGlnLeuAspValLeuAsnMetTrpIleThr : 242 !! !!.!.!..!!:!!|||||| !|||||||||..!|||:!!! :!!! !||| ! rSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValValMetLeuSerIleGlu 237451 : AAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTTATGTTGTCGATCGAA : 237507 243 : GluPheValAspGlnSerArgAsnSerSerLysLysValArgTrpAsnGlyIleGlyV : 262 !!:||||||..!:!!:!!|||..!!!!.!!||| ! ! !!.!!:::!!! !||| !. AspPheValSerGluAlaArgArgArgGlyLysAspAspHisPheAspGluIleProT 237508 : GATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGA : 237567 263 : alPheValAsnAsnHisThrAsnValLeu : 271 .!.!!|||.!..!.||| !!..|||||| hrIleValGluGluHisLeuArgValLeu 237568 : CAATCGTGGAGGAACATTTGAGAGTGTTG : 237596 vulgar: gi|805766386|ref|XP_003700842.2| 10 271 . KQ414889.1 236819 237596 + 557 M 29 87 G 2 0 M 230 690 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236820 237596 557 + . gene_id 7 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236820 237596 . + . KQ414889.1 exonerate:protein2genome:local exon 236820 237596 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236820 237596 557 + . alignment_id 7 ; Query gi|805766386|ref|XP_003700842.2| ; Align 236820 11 87 ; Align 236907 42 690 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 531 Query range: 20 -> 342 Target range: 217171 -> 219439 21 : AspTyrSerLeuGlnLeuAsnArgTrpLeuLeuLysProIleGlyValTrpProLysS : 40 ::: |||:!!|||! !|||||||||||||||||||||!!:|||:!!||||||!!.| AsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnS 217172 : aatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACT : 217229 41 : erPheTyrThrSerAsnIleGluLysIleValSerLeuIleSerAsnMetIleCysTy : 59 || ! !|||!!!!.. !..!||||||:!!! ! !:!:! !||| :!!||||| erArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTy 217230 : CACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTA : 217286 60 : rCysSerIleValIleThrValValProCysIleLeuHisLeuThrPheGluAspIle : 78 | !!! !||| !.!! ! !!||||||||| !:!!:!!:!! !.!!|||! ! ! rGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeuGluValGlu 217287 : CGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAA : 217343 79 : AspPheArgThrLysLeuLysValPheGlyProMetThrHisTrpPheAlaGlyGlyI : 98 |||.!! ! !|||||||||:!!|||||||||:!!! ! !!! ! !!.! !: AspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValMetAlaPheV 217344 : GATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCG : 217403 99 : leAsnTyrThrThrLeuLeuValArgGlyGluGluIleArgHisCysMetLysGlnMe : 117 !!!!.||| !:!!|||:!!|||!.! !! !!!:||||||.!.|||:!!!:!::!!! alLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCysValArgArgIl 217404 : TCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAAT : 217460 118 : tGlnAsnAspTrpArgThrValSerSerProGluValGlnGlnValMetLeuLysAsp : 136 ::!!...|||||||||!.!|||!!!!!! !:!!! !::!:!!!.!|||:!! !:!! eGluArgAspTrpArgAsnValArgCysGluLysAspArgGluAlaMetIleValAsn 217461 : CGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAAC : 217517 137 : AlaLysPheGlyArgAsnMetAlaThrPheCysThrValPheMetGlnGlyGlyValL : 156 |||!!.|||||||||!!.:!!!.! !.!!|||||| !!|||||| ! .!!||| : AlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheV 217518 : GCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcg : 217577 157 : euCysTyrCysAlaAlaMetAlaLeuThrLysGluIleValGlnValGlyAsnGluTh : 175 :: ||| !|||!!: !!:!!!:! !! !! !:!!! ! !! !|||! !!. alPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGluAsnGlyAs 217578 : ttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAA : 217634 176 : rArgThrIleHisThrLeuProIleAlaValTyrLysLysLeuIleProValAspThr : 194 !! !|||.!! ! !!||| !.!! !! !! ||| ! :!!||| !..! ! ! nLeuThrPheIleProLeuValPheProPheThrLysTyrIleIleAspThrArgTyr 217635 : CCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTAC : 217691 195 : SerProThrAsnGluIleValLeuAlaValGlnValLeuAlaAlaIleIleValAsnC : 214 !!!||||||||||||||||||!!! !:!!|||:!!:!!|||!.! !:!::!!:!! ThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisG 217692 : ACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACG : 217751 215 : ysThrValValGlyAlaPheSerLeuAlaIleValPheAlaAlaHisAlaHisGlyGl : 233 ! ! !..! !!.!|||! !||||||||| !!.!||||||!.!|||||| !||||| lyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGl 217752 : GAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCA : 217808 234 : nLeuAspValLeuAsnMetTrpIleThrGluPheValAspGlnSerArgAsnSerSer : 252 |:!!!!:||||||! ! |||:!: !.!.!!.:!!||| !!! !:!!! !||| nIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgAlaAspMetSer 217809 : GATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGAGCGGATATGAGC : 217865 253 : LysLysValArgTrpAsnGlyIleGlyValPheValAsnAsnHisThrAsnValLeuS : 272 ! ! ||| ! ..! !!|||!.! !.!!|||!:!.!.|||..!...:!!|||! AspThrValAsp---GlyArgIleAlaSerIleValSerGlnHisValArgIleLeuL 217866 : GATACTGTGGAT---GGTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTAA : 217922 273 : erPheIleGluHisIle{G} >>>> Target Intron 1 >>>> {lu}HisVa : 280 .!! !:!!..! ! |||{|} 1229 bp {||}..... ysCysValArg***Ile{G}-+ ++{lu}ArgTh 217923 : AGTGTGTAAGATAGATC{G}tt.........................ag{AG}AGAAC : 219175 281 : lMetAsnValIleCysPheThrGluLeuCysGlnCysThrMetSerIleCysPheLeu : 299 !:!:.!. !|||! !|||.!!|||!!! !|||||||||..!||||||.!!:!! rLeuGlnGlnIleSerPheAlaGluPheLeuGlyCysThrMetAspIleCysLeuVal 219176 : CCTCCAGCAAATCTCTTTCGCTGAATTTCTAGGATGCACCATGGACATATGTCTCGTT : 219232 300 : CysTyrTyrIleLeuThr >>>> Target Intron 2 >>>> GluTrpHisGl : 309 ! |||||||||:!!..! 76 bp |||||| ! .. GlyTyrTyrIleIleVal++ ++GluTrpLysSe 219233 : GGATATTACATTATCGTGgt.........................agGAATGGAAATC : 219338 310 : uHisAspIleHisAsnLeuThrThrTyrValIleIleLeuValSerValThrPheAsn : 328 !:!!|||:!! !:! !..!||||||:!!|||:!!|||:!!|||:!:||||||||| rAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerLeuThrPheAsn 219339 : GAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCCTcactttcaac : 219395 329 : ValPheIleMetCysTyrValGlyGluLeuLeuThrLysGln : 342 :::||||||...||||||:!!||||||:!!:!!.!!:!!||| IlePheIlePheCysTyrIleGlyGluIleValAlaGluGln 219396 : attttcatattttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: gi|805766386|ref|XP_003700842.2| 20 342 . KQ414889.1 217171 219439 + 531 M 236 708 G 1 0 M 20 60 S 0 1 5 0 2 I 0 1225 3 0 2 S 1 2 M 27 81 5 0 2 I 0 72 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217172 219439 531 + . gene_id 8 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217172 217940 . + . KQ414889.1 exonerate:protein2genome:local exon 217172 217940 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 217941 217942 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 217941 219169 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219168 219169 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219170 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219170 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217172 219439 531 + . alignment_id 8 ; Query gi|805766386|ref|XP_003700842.2| ; Align 217172 21 708 ; Align 217880 258 60 ; Align 219172 279 81 ; Align 219329 306 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 504 Query range: 21 -> 410 Target range: 278576 -> 280551 22 : TyrSerLeuGlnLeuAsnArgTrpLeuLeuLysProIleGlyValTrpProLysSerP : 41 ||||||:!!|||:!!|||||||||!!!|||||||||||||||||||||||| |||. TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 42 : heTyrThrSerAsnIleGluLysIleValSerLeuIleSerAsnMetIleCysTyrCy : 60 !!! !..!!!!!.!:!:||||||||| !|||:!!:!! ! :!:||| !!! !! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 61 : sSerIleValIleThrValValProCysIleLeuHisLeuThrPheGluAspIle<-> : 79 ! !|||! !.!! !:!!||||||||| !||| ! !..!.!!!!: ! ! ! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 80 : AspPheArgThrLysLeuLysValPheGlyProMetThrHisTrpPheAlaGlyGlyI : 98 |||.!! !||||||:!!|||:!!.!!||||||:!:!:! !!! !!.! !| AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 99 : leAsnTyrThrThrLeuLeuValArgGlyGluGluIleArgHisCysMetLysGlnMe : 117 ||!!.||| !! !|||:!! !||||||! :!!||| !! ! |||:!!!!..!.!! leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 118 : tGlnAsnAspTrpArgThrValSerSer<-><-><->ProGluValGlnGlnValMet : 133 :!::!..|||||| ! !..! !||| ||| :::::::::||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 134 : LeuLysAspAlaLysPheGlyArgAsnMetAlaThrPheCysThrValPheMetGlnG : 153 ! ! ..!|||!:!.!!||||||::!:!!|||! !||| !!.!!! !|||||| ! . ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 154 : lyGlyValLeuCysTyrCysAlaAlaMetAlaLeuThrLysGluIleValGlnValGl : 172 .!|||! !:!!! !||| !|||!.!||| !!||| ! !! ! !..!:!!:!! erGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIle-- 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATC-- : 279039 173 : yAsnGluThrArgThrIleHisThrLeuProIleAlaValTyrLysLysLeuIlePro : 191 ! !!!:!.!..!|||:!:...:!!! ! !!.!! !!:!!|||::: |||:!! ! -IleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAsp 279040 : -ATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGAT : 279093 192 : ValAspThrSerProThrAsnGluIleValLeuAlaValGlnValLeuAlaAlaIleI : 211 ! !|||||||||:!! !|||||||||! ! !:!!||| !|||||||||.!!: ProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheV 279094 : CCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCG : 279153 212 : leValAsnCysThrValValGlyAlaPheSerLeuAlaIleValPheAlaAlaHisAl : 230 !!:!! !!! ..!..!|||||||||! !|||||| ! !||||||!.! !|||!. alLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisVa 279154 : TTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGT : 279210 231 : aHisGlyGlnLeuAspValLeuAsnMetTrpIleThrGluPheValAspGlnSerArg : 249 ! !||||||!!! :!!||| ! !:!: !:!!.!!:!!||| ! !!:! lCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLys 279211 : CTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAA : 279267 250 : <->AsnSerSerLysLysValArgTrpAsnGlyIleGlyValPheValAsnAsnHisT : 268 !..!.!||| !!....!!.! .!. !!:!:|||! !.!!:!!.!.:!!||| GlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisL 279268 : GGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATC : 279327 269 : hrAsnValLeu{Se} >>>> Target Intron 1 >>>> {r}PheIleGluHi : 276 !!!.:!!|||{.!} 657 bp {!}!!..!! || euLysIleLeu{Gl}++ +-{y}LeuPheThrHi 279328 : TGAAGATACTG{GG}gt.........................at{A}TTATTTACTCA : 280008 277 : sIleGluHisValMetAsnValIleCysPheThrGluLeuCysGlnCysThrMetSer : 295 | !.!.... :!!! !:!!|||!:! !.!.:!! ..!...! !!!::!! sGlyAsnArg------AspAspLeuCysTyrPheHisIleValMetAlaLysIleAla 280009 : CGGTAACAGA------GACGACTTATGTTATTTCCATATTGTAATGGCAAAAATTGCA : 280059 296 : IleCysPheLeuCysTyrTyrIleLeuThrGluTrpHisGluHisAspIleHisAsnL : 315 .!! !.!.! !! ! ! :!!!!! !||||||.!.:!!:!!||| ! ... PheValMetTyrSerLeuSerValPhe***GluTrpGluGlnAsnAspAlaIleGlyT 280060 : TTCGTCATGTACTCGTTGTCAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAA : 280119 316 : euThrThrTyrValIleIleLeuValSerValThrPheAsnValPheIleMetCysTy : 334 ! !||||||:!!!!:.!!|||:!!|||:!!||||||||||||||||||:!:||||| hrPheThrTyrLeuMetPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTy 280120 : CGTTCACGTATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTA : 280176 335 : rValGlyGluLeuLeuThrLysGln >>>> Target Intron 2 >>>> CysA : 344 |:!!||||||:!!|||:!!:!!||| 74 bp ||| rIleGlyGluIleLeuSerGluGln++ ++CysL 280177 : CATCGGTGAAATTCTCTCCGAACaggt.........................agTGCT : 280280 345 : snArgIleAlaAspValIleTyrSerThrAsnTrpTyrTyrLeuProCysLysAsnVa : 363 !:!:!!!.!! !! !|||! !! !:!!|||||| !|||||| ! |||!!.!. euLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAl 280281 : TAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGC : 280337 364 : lLeuAspLeuThrValIleIleThrArgSerSerMetValThrLysIleThrAlaGly : 382 !! !! !|||! !:!!|||.!!.!! !|||!:! !! !|||:!!||||||||| aGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGly 280338 : ACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGA : 280394 383 : LysIleIleTyrMetSerMetTyrThrPheGlyAla >>>> Target Intron 3 : 395 ||||||||| !!:!:|||:!: !!:!||| !!::! 71 bp LysIleIleAspLeuSerLeuSerSerPheCysSer++ 280395 : AAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt.................... : 280435 396 : >>>> ValLeuLysThrSerPheThrTyrLeuAsnIleLeuArgGlnMetThr : 410 ||||||||||||:!!|||.!!||||||!:!:!!|||||| !:!:||| ++ValLeuLysThrAlaPheAlaTyrLeuSerLeuLeuArgThrLeuThr 280436 : .....agGTGTTAAAAACGGCATTCGCATATCTGAGCTTATTACGTACGCTTACC : 280551 vulgar: gi|805766386|ref|XP_003700842.2| 21 410 . KQ414889.1 278576 280551 + 504 M 57 171 G 0 3 M 48 144 G 0 9 M 45 135 G 1 0 M 77 231 G 0 3 M 22 66 S 0 2 5 0 2 I 0 653 3 0 2 S 1 1 M 7 21 G 2 0 M 61 183 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 280551 504 + . gene_id 9 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278577 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279340 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279997 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279996 279997 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 279998 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 279998 280202 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280551 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278577 280551 504 + . alignment_id 9 ; Query gi|805766386|ref|XP_003700842.2| ; Align 278577 22 171 ; Align 278751 79 144 ; Align 278904 127 135 ; Align 279039 173 231 ; Align 279273 250 66 ; Align 279999 273 21 ; Align 280020 282 183 ; Align 280277 343 156 ; Align 280504 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 413 Query range: 20 -> 275 Target range: 212869 -> 213631 21 : AspTyrSerLeuGlnLeuAsnArgTrpLeuLeuLysProIleGlyValTrpProLysS : 40 ::: |||::: !! !|||||||||||||||||||||! |||:!!|||||| ! ! AsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspL 212870 : aatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACA : 212927 41 : erPheTyrThrSerAsnIleGluLysIleValSerLeuIleSerAsnMetIleCysTy : 59 .!! !|||..!||| |||||||||! !:!!:!!! !:!: !|||! :!!||||| ysSerTyrValSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTy 212928 : AGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTA : 212984 60 : rCysSerIleValIleThrValValProCysIleLeuHisLeuThrPheGluAspIle : 78 | !!! !|||! ! ! !|||:!!||||||! !|||:!!:!! !.!!!!:! rGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGlu 212985 : CGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgag : 213041 79 : AspPheArgThrLysLeuLysValPheGlyProMetThrHisTrpPheAlaGlyGlyI : 98 :::... ::::!!:!!:!!|||||| !.!..!! !!! ! |||!.! ! AsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuT 213042 : aatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGT : 213101 99 : leAsnTyrThrThrLeuLeuValArgGlyGluGluIleArgHisCysMetLysGlnMe : 117 !!.||| !:!!|||:!!:!!!.!|||!!:!!:|||||| |||:!::!!!!.|| rpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMe 213102 : GGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATAT : 213158 118 : tGlnAsnAspTrpArgThrValSerSerProGluValGlnGlnValMetLeuLysAsp : 136 |:!! !!||||||!:!!.!:!!!!! ! !|||! !:!!:!!:!!||| ! !:!! tLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsn 213159 : GAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAAC : 213215 137 : AlaLysPheGlyArgAsnMetAlaThrPheCysThrValPheMetGlnGlyGlyValL : 156 |||!..||||||!:!!..!!:!.!|||.!!|||.!! !!|||||| ! !||| !! AlaSerPheGlyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheT 213216 : GCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCA : 213275 157 : euCysTyrCysAlaAlaMetAlaLeuThrLysGluIleValGlnValGlyAsnGluTh : 175 !! !|||! ! !!.!:!: !!:!!!:! !!!:! !:!! !!.!! !:!! !. hrPheTyrPheLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAs 213276 : CGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAA : 213332 176 : rArgThrIleHisThrLeuProIleAlaValTyrLysLysLeuIleProValAspThr : 194 ! !|||.!!... !:!! !:!! !!|||! !:! :!!:!! !||| ! nValThrPheArgGlnMetValValProValSerArgPheIleValAspValArgTyr 213333 : CGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATAC : 213389 195 : SerProThrAsnGluIleValLeuAlaValGlnValLeuAlaAlaIleIleValAsnC : 214 ||||||..!||||||||| !!!!! !:!!|||:!!:!!|||!.!:!!:!::!!:!!. SerProValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisA 213390 : AGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATG : 213449 215 : ysThrValValGlyAlaPheSerLeuAlaIleValPheAlaAlaHisAlaHisGlyGl : 233 .!! !!.!|||! !|||! !||||||||| !|||||||||!.!|||||| !||||| laIleAlaValValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGl 213450 : CTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACA : 213506 234 : nLeuAspValLeuAsnMetTrpIleThrGluPheValAspGlnSerArgAsnSerSer : 252 |:!!! !:!!|||! ! |||:!: !.!.!!.:!!||| !!!..!:!!! !||| nMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGlyArgGluAspMetSer 213507 : GATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGC : 213563 253 : LysLysValArgTrpAsnGlyIleGlyValPheValAsnAsnHisThrAsnValLeuS : 272 |||!!.||| ! :!! !!|||!.!|||.!!||||||.!.|||..!...:!!|||! LysAsnValAsp---AspArgIleAlaValIleValAsnGlnHisValArgIleLeuL 213564 : AAGAATGTGGAC---GACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTGA : 213620 273 : erPheIleGlu : 275 .!!:::!:||| ysTrpValGlu 213621 : AGTGGGTGGAA : 213631 vulgar: gi|805766386|ref|XP_003700842.2| 20 275 . KQ414889.1 212869 213631 + 413 M 236 708 G 1 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212870 213631 413 + . gene_id 10 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212870 213631 . + . KQ414889.1 exonerate:protein2genome:local exon 212870 213631 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212870 213631 413 + . alignment_id 10 ; Query gi|805766386|ref|XP_003700842.2| ; Align 212870 21 708 ; Align 213578 258 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 378 Query range: 22 -> 277 Target range: 221381 -> 222143 23 : SerLeuGlnLeuAsnArgTrpLeuLeuLysProIleGlyValTrpProLysSerPheT : 42 |||:!!||||||!:!||||||:!!||||||||||||||||||||||||!!.||| ! SerValGlnLeuSerArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaA 221382 : AGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCA : 221439 43 : yrThrSerAsnIleGluLysIleValSerLeuIleSerAsnMetIleCysTyrCysSe : 61 !!! !|||!..:!!|||!:! !:!!! !! !:!:! !|||:!::!!|||||| !! snIleSerThrValGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLe 221440 : ACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCT : 221496 62 : rIleValIleThrValValProCysIleLeuHisLeuThrPheGluAspIleAspPhe : 80 !|||..!.!! !:!!|||||||||! !|||:!!:!!! !.!!|||! !||| !! uIleThrPheLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspVal 221497 : GATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTC : 221553 81 : ArgThrLysLeuLysValPheGlyProMetThrHisTrpPheAlaGlyGlyIleAsnT : 100 !!.!!:!:!!|||:!!!!.||||||:!!!:! !!! ! !!.! !:!!!!.| TyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysT 221554 : TACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGT : 221613 101 : yrThrThrLeuLeuValArgGlyGluGluIleArgHisCysMetLysGlnMetGlnAs : 119 || ! !|||:!!:!! !! !.!.!!:||||||.!.|||!!::!!!::!!::!! yrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTr 221614 : ATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATG : 221670 120 : nAspTrpArgThrValSerSerProGluValGlnGlnValMetLeuLysAspAlaLys : 138 ||||||!:!!.!:!!!!!! ! !!:!!! !:!!.!.:!!|||:!!:!!:!!|||! pAspTrpLysAsnIleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIle 221671 : GGATTGGAAGAATATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATT : 221727 139 : PheGlyArgAsnMetAlaThrPheCysThrValPheMetGlnGlyGlyValLeuCysT : 158 |||||||||...:!! !! !.!!|||||| !!|||||| ! .!!||| ::: | PheGlyArgArgLeuIleMetIleCysThrPhePheMetTyrSerGlyPheValPheT 221728 : TTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGTACAGTggtttcgtttttt : 221787 159 : yrCysAlaAlaMetAlaLeuThrLysGluIleValGlnValGlyAsnGluThrArgTh : 177 || !|||!!: !!!!!!:! !! ! !:!!! !.! !:!! ... || yrTyrIleAlaIleProPheSerValGlyLysIleProAlaGlnAspValAsnValTh 221788 : attacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaac : 221844 178 : rIleHisThrLeuProIleAlaValTyrLysLysLeuIleProValAspThrSerPro : 196 |... !!:!! !.!! !! !!! !:! :!!:!! !..! !|||||| rPheIleProMetValPheProPheSerArgPheIleValAspThrArgTyrSerPro 221845 : ttttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCT : 221901 197 : ThrAsnGluIleValLeuAlaValGlnValLeuAlaAlaIleIleValAsnCysThrV : 216 ..!|||||||||:!!!!!:!!:!!|||:!!:!!|||!.! !:!::!!:!! !!! !. ValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleT 221902 : GTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTA : 221961 217 : alValGlyAlaPheSerLeuAlaIleValPheAlaAlaHisAlaHisGlyGlnLeuAs : 235 .! !!.!|||! !||||||!.! !:!!||||||!.!|||||| !||||||:!!.! hrSerAlaAlaCysSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMetGl 221962 : CATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCA : 222018 236 : pValLeuAsnMetTrpIleThrGluPheValAspGlnSerArgAsnSerSerLysLys : 254 .||||||! ! |||:!:! !.!.!!.:!!:!! !! !:!!! !!!!!!.!!. nValLeuMetSerTrpLeuLysHisLeuIleAsnGlyArgAlaAspMetCysAsnAsn 222019 : AGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGCCGGGCGGATATGTGTAACAAC : 222075 255 : ValArgTrpAsnGlyIleGlyValPheValAsnAsnHisThrAsnValLeuSerPheI : 274 ||| ! !.. !!|||!.! !.!!||||||.!.|||..!...:!!|||..!!:!: ValAsp---ArgArgIleAlaLysIleValAsnGlnHisValArgIleLeuGlnTyrV 222076 : GTGGAT---AGGAGAATAGCGAAGATTGTGAATCAACACGTTCGAATATTGCAGTATG : 222132 275 : leGluHisIle : 277 !!... !||| alArgCysIle 222133 : TACGTTGTATC : 222143 vulgar: gi|805766386|ref|XP_003700842.2| 22 277 . KQ414889.1 221381 222143 + 378 M 234 702 G 1 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221382 222143 378 + . gene_id 11 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221382 222143 . + . KQ414889.1 exonerate:protein2genome:local exon 221382 222143 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221382 222143 378 + . alignment_id 11 ; Query gi|805766386|ref|XP_003700842.2| ; Align 221382 23 702 ; Align 222084 258 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 336 Query range: 305 -> 410 Target range: 272836 -> 273302 306 : GluTrpHisGluHisAspIleHisAsnLeuThrThrTyrValIleIleLeuValSerV : 325 |||||| !!!:||||||.!!!!.!:!|||||||||||| !!!!:||||||:!!|||: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 326 : alThrPheAsnValPheIleMetCysTyrValGlyGluLeuLeuThrLysGln >>> : 343 !:|||||||||:::||||||:::||||||:!!||||||:!!||||||:!!::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 344 : > Target Intron 1 >>>> CysAsnArgIleAlaAspValIleTyrSerThrA : 354 70 bp |||...:::|||...!!:|||:!!|||! !|||| ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 355 : snTrpTyrTyrLeuProCysLysAsnValLeuAspLeuThrValIleIleThrArgSe : 373 ||||||||||||||||| !!|||:!!:!!|||||||||! !:!!||||||:!!|||!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 374 : rSerMetValThrLysIleThrAlaGlyLysIleIleTyrMetSerMetTyrThrPhe : 392 !|||:!:|||! !|||||||||||||||!:!|||:!! !||||||:!!||||||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 393 : GlyAla >>>> Target Intron 2 >>>> ValLeuLysThrSerPheThrTy : 402 |||! ! 81 bp |||:!!|||!:!:!!|||.!!|| GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 403 : rLeuAsnIleLeuArgGlnMetThr : 410 |||||||!!:|||||||||! !||| rLeuAsnMetLeuArgGlnThrThr 273277 : CTTAAATATGCTACGACAAACGACA : 273302 vulgar: gi|805766386|ref|XP_003700842.2| 305 410 . KQ414889.1 272836 273302 + 336 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273302 336 + . gene_id 12 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273302 336 + . alignment_id 12 ; Query gi|805766386|ref|XP_003700842.2| ; Align 272837 306 111 ; Align 273018 343 156 ; Align 273255 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 333 Query range: 21 -> 246 Target range: 284523 -> 285207 22 : TyrSerLeuGlnLeuAsnArgTrpLeuLeuLysProIleGlyValTrpProLysSerP : 41 ||||||:!!|||:!!|||||||||!!!|||||||||||||||||||||||| |||. TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 42 : heTyrThrSerAsnIleGluLysIleValSerLeuIleSerAsnMetIleCysTyrCy : 60 !!! !..!!!!!.!:!:||||||||| !|||:!!:!! ! :!:||| !!! !! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 61 : sSerIleValIleThrValValProCysIleLeuHisLeuThrPheGluAspIle<-> : 79 ! !|||! !.!! !:!!||||||||| !||| ! !..!.!!!!: ! ! ! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 80 : AspPheArgThrLysLeuLysValPheGlyProMetThrHisTrpPheAlaGlyGlyI : 98 |||.!! !||||||:!!|||:!!.!!||||||:!!!:! !!! .!. !!.!!.!| AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 99 : leAsnTyrThrThrLeuLeuValArgGlyGluGluIleArgHisCysMetLysGlnMe : 117 ||!!.||| !! !|||:!! !||||||! :!!||| !!!!.|||:!!|||.!.!! leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 118 : tGlnAsnAspTrpArgThrVal<-><-><->SerSerProGluValGlnGlnValMet : 133 :!:: |||||| ! !..! |||... ||| :::::::::||| eArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMet 284813 : TCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTG : 284869 134 : LeuLysAspAlaLysPheGlyArgAsnMetAlaThrPheCysThrValPheMetGlnG : 153 ! ! ..!|||!:!.!!||||||::!:!!|||! !||||||.!!! !|||||| ! . ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrS 284870 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATT : 284929 154 : lyGlyValLeuCysTyrCysAlaAlaMetAlaLeuThrLysGluIleValGlnValGl : 172 .!|||! !!!!! !||| !.!!!.!||| !!||| !! !! ! !..!:!!:!! erGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIle-- 284930 : CCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATC-- : 284986 173 : yAsnGluThrArgThrIleHisThrLeuProIleAlaValTyrLysLysLeuIlePro : 191 ! !!!:!.!..!|||:!:...:!!! ! !!.!! !!:!!|||::: |||:!! ! -IleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAsp 284987 : -ATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGAT : 285040 192 : ValAspThrSerProThrAsnGluIleValLeuAlaValGlnValLeuAlaAlaIleI : 211 ! !|||||||||:!! !|||||||||! ! !:!!||| !|||||||||.!!: ProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheV 285041 : CCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCG : 285100 212 : leValAsnCysThrValValGlyAlaPheSerLeuAlaIleValPheAlaAlaHisAl : 230 !!:!! !!! ..!..!|||||||||! !||||||||| !||||||!.! !|||!. alIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisVa 285101 : TTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGT : 285157 231 : aHisGlyGlnLeuAspValLeuAsnMetTrpIleThrGluPheValAsp : 246 ! !||||||!!! :!!||| ! !:!: !:!!.!!|||||| lCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAsp 285158 : CTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGAC : 285207 vulgar: gi|805766386|ref|XP_003700842.2| 21 246 . KQ414889.1 284523 285207 + 333 M 57 171 G 0 3 M 46 138 G 0 9 M 47 141 G 1 0 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 285207 333 + . gene_id 13 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284524 285207 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 285207 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284524 285207 333 + . alignment_id 13 ; Query gi|805766386|ref|XP_003700842.2| ; Align 284524 22 171 ; Align 284698 79 138 ; Align 284845 125 141 ; Align 284986 173 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 324 Query range: 20 -> 274 Target range: 226927 -> 227686 21 : AspTyrSerLeuGlnLeuAsnArgTrpLeuLeuLysProIleGlyValTrpProLysS : 40 :!! |||:!!|||||||||||||||||||||||||||:!!|||:!!||||||..!| AsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerS 226928 : AACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGT : 226985 41 : erPheTyrThrSerAsnIleGluLysIleValSerLeuIleSerAsnMetIleCysTy : 59 || ! ! !:!|||...|||! !!:! ! !!|||! !:!:! !..!.!.:!!||||| erArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTy 226986 : CGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTA : 227042 60 : rCysSerIleValIleThrValValProCysIleLeuHisLeuThrPheGluAspIle : 78 |... !!!: !.!! !:!!||| !! !! !|||:!!:!!..!.!.|||! ! ! rAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLys 227043 : CGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAA : 227099 79 : AspPheArgThrLysLeuLysValPheGlyProMetThrHisTrpPheAlaGlyGlyI : 98 ! ! ! !!.!! !||||||:!!.!!|||||||||:!! !!:: !..! !: GlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuL 227100 : GGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCC : 227159 99 : leAsnTyrThrThrLeuLeuValArgGlyGluGluIleArgHisCysMetLysGlnMe : 117 !!!!.|||:!!! !||| ! !!!.!! !!!:!!:|||! !.!.|||:!::!!!:!!! euLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIl 227160 : TCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGAT : 227216 118 : tGlnAsnAspTrpArgThrValSerSerProGluValGlnGlnValMetLeuLysAsp : 136 ::!! ||||||!:!!.!:!!!!!! !! !|||! !::!.!.||||||:!!! ! !! eLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyr 227217 : CAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTAC : 227273 137 : AlaLysPheGlyArgAsnMetAlaThrPheCysThrValPheMetGlnGlyGlyValL : 156 ||| ! !:!||||||!!.:!! !|||.!!|||||| !!|||:!: ...... : AlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheV 227274 : GCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcg : 227333 157 : euCysTyrCysAlaAlaMetAlaLeuThrLysGluIleValGlnValGlyAsnGluTh : 175 :: ::: !!.!:!: !!:!!!.! ! !! !||| !..!! !:!!! !!. alPhePheTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGlyAs 227334 : tatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAA : 227390 176 : rArgThrIleHisThrLeuProIleAlaValTyrLysLysLeuIleProValAspThr : 194 !!.!!:! ! ! !:!!|||.!! !! !! |||! :!! ! !||| ! ! nHisSerTyrIleGlnMetProPheProPheProLysIleIleAlaAspValArgTyr 227391 : CCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTAC : 227447 195 : SerProThrAsnGluIleValLeuAlaValGlnValLeuAlaAlaIleIleValAsnC : 214 |||||| !||||||||| !!!!!:!!|||||| !!:!!.!!!.!|||:!::!!:!! SerProPheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuHisG 227448 : AGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACG : 227507 215 : ysThrValValGlyAlaPheSerLeuAlaIleValPheAlaAlaHisAlaHisGlyGl : 233 !!..!..! !!.!|||! !|||:!!||| !:!!.!!|||!.!|||||| !||||| lyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGl 227508 : GTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCA : 227564 234 : nLeuAspValLeuAsnMetTrpIleThrGluPheValAspGlnSerArgAsnSerSer : 252 |:!!!!:|||||| |||:!: !.!.!!.:!!||| !!! !:!!! !||| nMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGlyArgAlaAspMetSer 227565 : GATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGCAGAGCGGATATGAGC : 227621 253 : LysLysValArgTrpAsnGlyIleGlyValPheValAsnAsnHisThrAsnValLeuS : 272 |||! !:!! ! :!! !!|||!.! !.!!|||!.!:!!|||..!...:!!|||! LysThrLeuAsp---AspArgIleAlaSerIleValThrHisHisValArgIleLeuL 227622 : AAAACACTGGAT---GATAGAATCGCTAGCATCGTCACTCACCACGTTCGAATATTGA : 227678 273 : erPheIle : 274 .!! !:!! ysCysVal 227679 : AGTGTGTA : 227686 vulgar: gi|805766386|ref|XP_003700842.2| 20 274 . KQ414889.1 226927 227686 + 324 M 236 708 G 1 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226928 227686 324 + . gene_id 14 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226928 227686 . + . KQ414889.1 exonerate:protein2genome:local exon 226928 227686 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226928 227686 324 + . alignment_id 14 ; Query gi|805766386|ref|XP_003700842.2| ; Align 226928 21 708 ; Align 227636 258 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 261 Query range: 21 -> 271 Target range: 289735 -> 290479 22 : TyrSerLeuGlnLeuAsnArgTrpLeuLeuLysProIleGlyValTrpProLysSerP : 41 |||!!!!!!:!!||| !!.!|||:!!|||||||||||||||:!!!::||| !| TyrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrProPheValP 289736 : TACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCT : 289793 42 : he<->TyrThrSerAsnIleGluLysIleValSerLeuIleSerAsnMetIleCysTy : 59 || !.!!|||!.. !|||::!! !.!|||:!!:!: !! !:!!:!!|||! heSerArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLeuValCysCy 289794 : TTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTG : 289850 60 : rCysSerIleValIleThrValValProCysIleLeuHisLeuThrPheGluAspIle : 78 !! ! !:!! !.!!! !:!!||||||! !! !! !|||:!! !|||...|||! ! sSerIleLeuGlnPheIleIleValProPheSerHisHisValLeuPheSerAspAsn 289851 : CTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAAC : 289907 79 : AspPheArgThrLysLeuLysValPheGlyProMetThrHisTrpPheAlaGlyGlyI : 98 |||.!.!.!||| :!!||| !.!!||||||:!!||| !!! !!..!! ! !. AspMetAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuThrThrPheP 289908 : GACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCT : 289967 99 : leAsnTyrThrThrLeuLeuValArgGlyGluGluIleArgHisCysMetLysGlnMe : 117 !!!!.||| ! !!!! !:!!!:!|||..!! !||| !!!.!|||:!!|||!!.!! heLysTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysValLysHisIl 289968 : TCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACAT : 290024 118 : tGlnAsnAspTrpArgThrValSerSerProGluValGlnGlnValMetLeuLysAsp : 136 ::!!!..||||||!:!! !:!! !!..! !!!: !!:: :!!||||||!:! !! eGluArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMetLeuArgTyr 290025 : CGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATAC : 290081 137 : AlaLysPheGlyArgAsnMetAlaThrPheCysThrValPheMetGlnGlyGlyValL : 156 !.!! !.!..!!||||||:!: !! !.!.|||.!!:!!|||:!! ! !|||! !| ValThrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyL 290082 : GTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTC : 290141 157 : euCysTyrCysAlaAlaMetAlaLeuThrLysGluIleValGlnValGlyAsnGluTh : 175 ||! !||| !.!!!.!!!: !!||| !..!:!!! ! ! !||||||! ! euSerTyrAsnThrValIleProLeuPheSerLysLysSerValAsnGlyAsnVal-- 290142 : TGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGGTAACGTG-- : 290198 176 : rArgThrIleHisThrLeuProIleAlaValTyrLysLysLeuIleProValAspThr : 194 ||||||... !!||| !! ! !!! !|||:!!:!!!!!.!! !|||.!.! ! ----ThrIleArgProLeuThrTyrProGlyTyrGluGluPhePheAspValGlnLys 290199 : ----ACTATCAGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAG : 290249 195 : SerProThrAsnGluIleValLeuAlaValGlnValLeuAlaAlaIleIleValAsnC : 214 ||||||.!! !!|||||||||!!!..!:!!!!. !:!! !!.!!!:|||..! SerProAlaTyrGluIleValPheCysMetHisCysValTyrValMetIleThrAlaA 290250 : AGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGA : 290309 215 : ysThrValValGlyAlaPheSerLeuAlaIleValPheAlaAlaHisAlaHisGlyGl : 233 !! !..!:!!!.!|||!:!||||||.!!! :!!||||||.!!|||.!! !||||| snIleThrMetAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGl 290310 : ACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCA : 290366 234 : nLeuAspValLeuAsnMetTrpIleThrGluPheValAspGlnSerArgAsnSerSer : 252 |:!! ! :!!! !!..! ! !!:!: !!!:.!...! ! ::!.!!! ! ! !..! nIleLysIleGlnThrThrArgLeuGluAspLeuThrLysArgGlyMetLeuLeuGlu 290367 : GATTAAGATACAAACGACGCGGCTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAG : 290423 253 : LysLysValArgTrpAsnGlyIleGlyValPheValAsnAsnHisThrAsnValLeu : 271 ||| !|||!!! :!! !!:!:!.!||| !!|||!:!..!|||..!.!.:!!||| LysGlyValSer---AspArgLeuAlaValValValSerGlyHisValGluIleLeu 290424 : AAGGGAGTGAGT---GATCGTTTGGCGGTTGTTGTGAGCGGTCACGTGGAGATCTTG : 290479 vulgar: gi|805766386|ref|XP_003700842.2| 21 271 . KQ414889.1 289735 290479 + 261 M 20 60 G 0 3 M 133 399 G 2 0 M 80 240 G 1 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289736 290479 261 + . gene_id 15 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289736 290479 . + . KQ414889.1 exonerate:protein2genome:local exon 289736 290479 . + . insertions 3 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 289736 290479 261 + . alignment_id 15 ; Query gi|805766386|ref|XP_003700842.2| ; Align 289736 22 60 ; Align 289799 42 399 ; Align 290198 177 240 ; Align 290438 258 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 254 Query range: 305 -> 398 Target range: 244441 -> 244826 306 : GluTrpHisGluHisAspIleHisAsnLeuThrThrTyrValIleIleLeuValSerV : 325 |||||| ||| !||| ! ! ! !|||! !|||||| !!||| !||||||:!!: GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheIleAlaLeuValAlaI 244442 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTATAGCACTCGTTGCTA : 244499 326 : alThrPheAsnValPheIleMetCysTyrValGlyGluLeuLeuThrLysGln >>> : 343 !!..!! !|||..!||||||:!:||||||:!!.!!!!: !||||||:!!||| leValSerAsnThrPheIleLeuCysTyrIleSerAspArgLeuThrGluGln++ 244500 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGACAGGCTGACAGAACAGgt... : 244555 344 : > Target Intron 1 >>>> CysAsnArgIleAlaAspValIleTyrSerThrA : 354 106 bp ||| !:!:!!!.!!!:|||:!!|||! !|||: ++CysLeuLysValGlyGluValValTyrMetThrA 244556 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 244692 355 : snTrpTyrTyrLeuProCysLysAsnValLeuAspLeuThrValIleIleThrArgSe : 373 !!||||||||||||||| !:!!..:!!|||||||||! !:!!||||||! !||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSe 244693 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATC : 244749 374 : rSerMetValThrLysIleThrAlaGlyLysIleIleTyrMetSerMetTyrThrPhe : 392 |!:!||||||..!:!!|||||||||||||||:!!:!!:!!||||||:!:||||||||| rAsnMetValValGluIleThrAlaGlyLysValLeuHisMetSerLeuTyrThrPhe 244750 : GAACATGGTCGTTGAAATCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTC : 244806 393 : GlyAlaValLeuLysThr : 398 |||! !||| !:!!||| GlyAspValSerGluThr 244807 : GGCGATGTAAGTGAAACT : 244826 vulgar: gi|805766386|ref|XP_003700842.2| 305 398 . KQ414889.1 244441 244826 + 254 M 37 111 5 0 2 I 0 102 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244442 244826 254 + . gene_id 16 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244442 244552 . + . KQ414889.1 exonerate:protein2genome:local exon 244442 244552 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244553 244554 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244553 244658 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244657 244658 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244659 244826 . + . KQ414889.1 exonerate:protein2genome:local exon 244659 244826 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244442 244826 254 + . alignment_id 16 ; Query gi|805766386|ref|XP_003700842.2| ; Align 244442 306 111 ; Align 244659 343 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 254 Query range: 22 -> 217 Target range: 294690 -> 295275 23 : SerLeuGlnLeuAsnArgTrpLeuLeuLysProIleGlyValTrpProLysSerPhe< : 42 ||||||:!!! ! !||| !!||||||||||||||||||:!!|||||| ! !!:! SerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrS 294691 : AGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACA : 294748 43 : ->TyrThrSerAsnIleGluLysIleValSerLeuIleSerAsnMetIleCysTyrCy : 60 :!!||||||!!.:!:.!.|||:!!:!!|||:!!||| !! ! ! ||| ! erHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLe 294749 : GTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTT : 294805 61 : sSerIleValIleThrValValProCysIleLeuHisLeuThrPheGluAspIleAsp : 79 !!!:!!:!!.!!..!:!!||||||||| !! ! !! !..!|||.!.! ::: uThrValLeuPheValLeuValProCysGlyTyrPheCysValPheHisValLysAsn 294806 : GACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaac : 294862 80 : PheArgThrLysLeuLysValPheGlyProMetThrHisTrpPheAlaGlyGlyIleA : 99 ::: |||:!!|||:!!.!.||||||:!: !:!!! .!. !..! !:!!! ValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuA 294863 : gtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCA : 294922 100 : snTyrThrThrLeuLeuValArgGlyGluGluIleArgHisCysMetLysGlnMetGl : 118 ..|||!:! !|||:!!:!!!:! ! ! !.!!!:!||||||!!::!!.!.!!::! rgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCysIleGluAspIleGl 294923 : GGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGA : 294979 119 : nAsnAspTrpArgThrValSerSerProGluValGlnGlnValMetLeuLysAspAla : 137 !|||||||||!:! !:!!..!!:!|||||| !!:! !:!!|||:!!|||:!!||| uAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIleMetIleLysAsnAla 294980 : GAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCG : 295036 138 : LysPheGlyArgAsnMetAlaThrPheCysThrValPheMetGlnGlyGlyValLeuC : 157 ! ! !! !!:!!..|||.!!..! !! !|||:!!.!.!!: ! .!!..!!.!:!!! MetValThrGlnArgMetThrValAlaPheThrIleIleIleTyrSerSerAlaValS 295037 : ATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGT : 295096 158 : ysTyrCysAlaAlaMetAlaLeuThrLysGluIleValGlnValGlyAsnGluThrAr : 176 ||| !||| !::: ... ...... :!!:!! ..!!!.:!!!.!!. erTyrHisAlaIleValProPhePheSerAsnAlaLeuGlu---AsnLysLysAsnAs 295097 : CGTATCACGCCATTGtgccatttttttcaaacgctTTGGAG---AACAAGAAGAATAA : 295150 177 : gThrIleHisThrLeuProIleAlaValTyrLysLysLeuIleProValAspThrSer : 195 !||||||!.!.!!||||||||| !!! !|||:!! !!!!:!! !!.! !!:!!||| nThrIleArgAlaLeuProIleProGlyTyrGluLeuPheValAspAlaTyrSerSer 295151 : TACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGT : 295207 196 : ProThrAsnGluIleValLeuAlaValGlnValLeuAlaAlaIleIleValAsnCysT : 215 |||||| !!||||||:!! !.!! !! !!:!! !:!!.!!.!!|||||| | ProThrTyrGluIleIleArgThrHisLeuPheValTyrSerPhePheValAsnLysT 295208 : CCTACCTACGAGATCATAAGAACTCATCTCTTTGTTTACTCGTTCTTCGTCAACAAAA : 295267 216 : hrValVal : 217 ||! !||| hrGlyVal 295268 : CTGGTGTC : 295275 vulgar: gi|805766386|ref|XP_003700842.2| 22 217 . KQ414889.1 294690 295275 + 254 M 19 57 G 0 3 M 129 387 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294691 295275 254 + . gene_id 17 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294691 295275 . + . KQ414889.1 exonerate:protein2genome:local exon 294691 295275 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294691 295275 254 + . alignment_id 17 ; Query gi|805766386|ref|XP_003700842.2| ; Align 294691 23 57 ; Align 294751 42 387 ; Align 295138 172 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 235 Query range: 305 -> 401 Target range: 277371 -> 277731 306 : GluTrpHisGluHisAspIleHisAsnLeuThrThrTyrValIleIleLeuValSerV : 325 |||||| !!!: !|||:!!!!.!..:!!||||||:!! !!!!:||||||:!!|||: GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 326 : alThrPheAsnValPheIleMetCys{T} >>>> Target Intron 1 >>>> : 334 !: ||||||:::||| !:!:|||{|} 72 bp etCysPheAsnIlePheThrValCys{T}-+ ++ 277430 : TgtgtttcaacatttttacAGTATGC{T}at.........................ag : 277527 335 : {yr}ValGlyGluLeuLeuThrLysGlnCysAsnArgIleAlaAspValIleTyrSer : 352 {||}..! !..!! ! ! !::!||||||!!.!:!:!!!.!!!:|||:!!|||! ! {yr}ThrHisArg***AsnPheArgGlnCysLysLysValGlyGluValValTyrMet 277528 : {AT}ACTCACCGATGAAATTTCCGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATG : 277582 353 : ThrAsnTrpTyrTyrLeuProCysLysAsnValLeuAspLeuThrValIleIleThrA : 372 ||||||||||||||||||||| !|||:!!:!!|||:!!||| !:!!||||||:!!| ThrAsnTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerA 277583 : ACGAATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAA : 277642 373 : rgSerSerMetValThrLysIleThrAlaGlyLysIleIleTyrMetSerMetTyrTh : 391 ||||||||:::||| ||||||||||||||||||:::||| ||||||:!!||||| rgSerSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrTh 277643 : GATCTAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACAC : 277699 392 : rPheGlyAlaValLeuLysThrSerPheThr : 401 |||||||! !|||! !..! ! !|||||| rPheGlyAspValArgSerLeuLeuPheThr 277700 : GTTCGGCGATGTACGTTCACTTCTTTTTACA : 277731 vulgar: gi|805766386|ref|XP_003700842.2| 305 401 . KQ414889.1 277371 277731 + 235 M 28 84 S 0 1 5 0 2 I 0 68 3 0 2 S 1 2 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277731 235 + . gene_id 18 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277456 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277457 277458 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 277457 277528 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277527 277528 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277529 277731 . + . KQ414889.1 exonerate:protein2genome:local exon 277529 277731 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277731 235 + . alignment_id 18 ; Query gi|805766386|ref|XP_003700842.2| ; Align 277372 306 84 ; Align 277531 335 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 233 Query range: 301 -> 410 Target range: 210651 -> 212081 302 : TyrIleLeuThrGluTrpHisGluHisAspIleHisAsnLeuThrThrTyrValIleI : 321 !:!:!!||| !|||||| !!... ! ||| ! !!:! ! !||||||:!!:!!: PheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValL 210652 : TTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTAC : 210709 322 : leLeuValSerValThrPheAsnValPheIleMetCysTyrValGlyGluLeuLeuTh : 340 !!|||..!|||||||||||||||:!!||||||.!.||||||:!!||||||:!!|||.! euLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAl 210710 : TCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGC : 210766 341 : rLysGln >>>> Target Intron 1 >>>> CysAsnArgIleAlaAspValI : 350 !:!!||| 999 bp !:!:!!!.!!!: ! aGluGln++ ++ThrValLysValGlyGluLysS 210767 : TGAACAggt.........................agACAGTAAAAGTTGGAGAAAAGT : 211795 351 : leTyrSerThrAsnTrpTyrTyrLeuProCysLysAsnValLeuAspLeuThrValIl : 369 !|||! !! !:!!|||||| :!!||| ! |||!!.! !|||! !:!! !!:!!!! erTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValValProLeuMe 211796 : CTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGAT : 211852 370 : eIleThrArgSerSerMetValThrLysIleThrAlaGlyLysIleIleTyrMetSer : 388 :|||:!!! !||| ! !..!||||||||||||||||||!!.:!!||| !:!:||| tIleSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleValLeuSer 211853 : GATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTTCTTTCA : 211909 389 : MetTyrThrPheGlyAla >>>> Target Intron 2 >>>> ValLeuLysTh : 398 !!: !!:!||||||! ! 104 bp |||:!!||||| IleSerSerPheGlyAsp++ ++ValIleLysTh 211910 : ATCAGTAGTTTCGGTGACgt.........................agGTTATCAAGAC : 212043 399 : rSerPheThrTyrLeuAsnIleLeuArgGlnMetThr : 410 |||| ! ||||||||||||!!:|||||| !.!.||| rSerValThrTyrLeuAsnMetLeuArgThrPheThr 212044 : TTCGGTAACATACTTGAACATGCTACGAACATTCACA : 212081 vulgar: gi|805766386|ref|XP_003700842.2| 301 410 . KQ414889.1 210651 212081 + 233 M 41 123 5 0 2 I 0 995 3 0 2 M 52 156 5 0 2 I 0 100 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210652 212081 233 + . gene_id 19 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 210652 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210652 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211929 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 211930 211931 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 211930 212033 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 212032 212033 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 212034 212081 . + . KQ414889.1 exonerate:protein2genome:local exon 212034 212081 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210652 212081 233 + . alignment_id 19 ; Query gi|805766386|ref|XP_003700842.2| ; Align 210652 302 123 ; Align 211774 343 156 ; Align 212034 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 231 Query range: 341 -> 408 Target range: 264723 -> 265004 342 : GlnCysAsnArgIleAlaAspValIleTyrSerThrAsnTrpTyrTyrLeuProCysL : 361 ||||||!!.!:!:!!!.!!!:|||:!!|||! !:!!||||||||||||||||||! !| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 362 : ysAsnValLeuAspLeuThrValIleIleThrArgSerSerMetValThrLysIleTh : 380 ||:!!:!!|||||||||! !:!!|||||| !|||||||||:!!||| !|||.!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 381 : rAlaGlyLysIleIleTyrMetSerMetTyrThrPheGlyAla >>>> Target I : 395 |||||||||||||:!!:!!||||||||||||||||||.!!! ! 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 396 : ntron 1 >>>> ValLeuLysThrSerPheThrTyrLeuAsnIleLeuArgGln : 408 bp |||:!!|||:!!||||||||||||||||||:!!||||||||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArgGln 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGCCAA : 265004 vulgar: gi|805766386|ref|XP_003700842.2| 341 408 . KQ414889.1 264723 265004 + 231 M 53 159 5 0 2 I 0 76 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265004 231 + . gene_id 20 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265004 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265004 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265004 231 + . alignment_id 20 ; Query gi|805766386|ref|XP_003700842.2| ; Align 264724 342 159 ; Align 264963 395 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 227 Query range: 297 -> 406 Target range: 305076 -> 305816 298 : PheLeuCysTyrTyrIleLeuThrGluTrpHisGluHisAspIleHisAsnLeuThrT : 317 |||||| |||::: !!!:|||.!.... !:!!! ! !!:!||||||| PheLeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrT 305077 : TTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAA : 305134 318 : hrTyrValIleIleLeuValSerValThrPheAsnValPheIleMetCysTyrValGl : 336 |||||..!:!::!!|||:!!|||||||||||||||:!!||||||:!:||||||:!!|| hrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGl 305135 : CATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGG : 305191 337 : yGluLeuLeuThrLysGln >>>> Target Intron 1 >>>> CysAsnArgI : 346 ||||:!!|||! !:!!:!! 413 bp !!!:!!!!: yGluIleLeuMetGluLys++ ++SerSerSerV 305192 : TGAGATTCTTATGGAAAAGgt.........................agAGCAGTAGCG : 305634 347 : leAlaAspValIleTyrSerThrAsnTrpTyrTyrLeuProCysLysAsnValLeuAs : 365 !!!.! ! !!:!! !! !!:!||||||:!!|||||| !|||!..:!!! !! alGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGl 305635 : TTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGG : 305691 366 : pLeuThrValIleIleThrArgSerSerMetValThrLysIleThrAlaGlyLysIle : 384 !|||! !:!!||||||.!!! !||||||! !.!!||||||!:!|||||||||:!! yLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysVal 305692 : TCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTA : 305748 385 : IleTyrMetSerMetTyrThrPheGlyAlaValLeuLysThrSerPheThrTyrLeuA : 404 :!! !!:!:|||:!:! !||||||||| !||| ! ! !...:::::: :::: ValAspLeuSerLeuSerThrPheGlyAsnValSerTyrTyrGlnTyrSerAsnIleS 305749 : GTTGATTTATCTTTATCCACATTTGGAAACGTGAGTTACTATcaatattccaatattt : 305808 405 : snIleLeu : 406 ::|||::: erIleVal 305809 : caattgtt : 305816 vulgar: gi|805766386|ref|XP_003700842.2| 297 406 . KQ414889.1 305076 305816 + 227 M 45 135 5 0 2 I 0 409 3 0 2 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305077 305816 227 + . gene_id 21 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305077 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305077 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305816 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305816 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305077 305816 227 + . alignment_id 21 ; Query gi|805766386|ref|XP_003700842.2| ; Align 305077 298 135 ; Align 305625 343 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 216 Query range: 283 -> 410 Target range: 301620 -> 302163 284 : IleCysPheThrGluLeuCysGlnCysThrMetSerIleCysPheLeuCysTyrTyrI : 303 :!!||| ... ::: |||:!:!:! ! |||||| ! ! LeuCysAlaValIleLysPheGluSerThrLeuAsnAlaLysPheLeuArgValIle* 301621 : CTCTGCgctgtaattaaatttgaatctACTTTAAATGCAAAGTTTTTACGAGTAATTT : 301678 304 : leLeuThrGluTrpHisGluHisAspIleHisAsnLeuThrThrTyrValIleIleLe : 322 !!!! !||||||!!..!. !|||! ! !:!! !|||!:! !!! !:!:|| **Phe***GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLe 301679 : GATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTT : 301735 323 : uValSerValThrPheAsnValPheIleMetCysTyrValGlyGluLeuLeuThrLys : 341 |..!||| !!|||||||||:!!||||||.!.||||||:!!||||||:!!|||:!!:!! uThrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGlu 301736 : AACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAA : 301792 342 : Gln >>>> Target Intron 1 >>>> CysAsnArgIleAlaAspValIleTy : 351 ||| 80 bp |||!:!!:!|||!.!...!.! || Gln++ ++CysSerGlnIleGlySerAlaSerTy 301793 : CAGgt.........................agTGTAGCCAAATTGGTTCAGCATCGTA : 301902 352 : rSerThrAsnTrpTyrTyrLeuProCysLysAsnValLeuAspLeuThrValIleIle : 370 |..!! !:!!|||||| !!||||||...|||!..!.!! !||||||! !:!!:!!! ! rGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSer 301903 : CGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGC : 301959 371 : ThrArgSerSerMetValThrLysIleThrAlaGlyLysIleIleTyrMetSerMetT : 390 ..!! !|||..! ! !!|||:!!|||||||||||||||||| !!:!:|||:!! ValIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuA 301960 : GTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGA : 302019 391 : yrThrPheGlyAla >>>> Target Intron 2 >>>> ValLeuLysThrSer : 399 !!||||||.!!:!! 82 bp |||:!!||||||||| snThrPheSerSer++ ++ValValLysThrSer 302020 : ATACATTCAGCTCTgt.........................agGTGGTGAAAACATCG : 302128 400 : PheThrTyrLeuAsnIleLeuArgGlnMetThr : 410 ! ..!|||||||||:!!|||||| !:!:||| ValValTyrLeuAsnLeuLeuArgThrValThr 302129 : GTGGTGTACTTGAATTTACTGCGAACAGTTACA : 302163 vulgar: gi|805766386|ref|XP_003700842.2| 283 410 . KQ414889.1 301620 302163 + 216 M 59 177 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301621 302163 216 + . gene_id 22 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301621 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301621 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302163 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302163 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301621 302163 216 + . alignment_id 22 ; Query gi|805766386|ref|XP_003700842.2| ; Align 301621 284 177 ; Align 301878 343 156 ; Align 302116 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 198 Query range: 19 -> 236 Target range: 194165 -> 194807 20 : SerAspTyrSerLeuGlnLeuAsnArgTrpLeuLeuLysProIleGlyValTrpProL : 39 !!!!!:|||:!!:!!!:!:!! !:! !||||||! !|||||||||:!!||||||! ThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProA 194166 : ACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAA : 194223 40 : ysSerPheTyrThrSerAsnIleGluLysIleValSerLeuIleSerAsnMetIleCy : 58 :!..! !||| ! !!!:!:!:!! ! !!!! !..!!.! :!: rgGlu------AspSerLeuArgAspArgValArgLeuPheAlaGlnThrGlyValVa 194224 : GGGAG------GATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGT : 194274 59 : sTyrCysSerIleValIleThrValValProCysIleLeuHisLeuThrPheGluAsp : 77 !!:!..!! !!!: !.!! !:!!|||||| !:!::!!:!! ! !|||!!: ! lPheAlaLeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCys 194275 : CTTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGC : 194331 78 : IleAspPheArgThrLysLeuLysValPheGlyProMetThrHisTrpPheAlaGlyG : 97 |||.!.! !! ! ! :!!||||||.!!!.! !!.....! ! ! .!. !!.! GluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaI 194332 : GAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGA : 194391 98 : lyIleAsnTyrThrThrLeuLeuValArgGlyGluGluIleArgHisCysMetLysGl : 116 !|||!!.!:! !|||:!!:!!|||!.! !!:!!||||||||| !|||:!! !:! leIleLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGl 194392 : TCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGA : 194448 117 : nMetGlnAsnAspTrpArgThrValSerSerProGluValGlnGlnValMetLeuLys : 135 !|||:!!!...!.!::||| !|||..!!!! !|||! !!:!||||||||| !!!. uMetGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsn 194449 : GATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAAT : 194505 136 : AspAlaLysPheGlyArgAsnMetAlaThrPheCysThrValPheMetGlnGlyGlyV : 155 !||||||.!!|||||| !.!..!!|||.!.! ! !! !.!! ! ||||||! CysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyA 194506 : TGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCG : 194565 156 : alLeuCysTyrCysAlaAlaMetAlaLeuThrLysGluIleValGlnValGlyAsnGl : 174 .!||| ||| ! ! !:!: !!|||! !..!|||! :!! ||| !.!.!! laLeuProTyrHisIleIleLeuProLeuMetSerGluArgIle---ValLysGluAs 194566 : CTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATT---GTCAAGGAGGA : 194619 175 : uThrArgThrIleHisThrLeuProIleAlaValTyrLysLysLeuIleProValAsp : 193 :!.!!!!||| !!|||||| ! ! ! !! ! !!!.!! !!:!!!!: pAsnSerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGlu 194620 : TAACAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAA : 194676 194 : ThrSerProThrAsnGluIleValLeuAlaValGlnValLeuAlaAlaIleIleValA : 213 !||||||! ! !!||||||..!!!!!.! !|||:!!||| !::!! !|||:!! AspSerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleL 194677 : GACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATAT : 194736 214 : snCysThrValValGlyAlaPheSerLeuAlaIleValPheAlaAlaHisAlaHisGl : 232 ! ||| ! !||| !!:!||||||!.! !..!.!! ! !|||..! !|| euSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGl 194737 : TGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGG : 194793 233 : yGlnLeuAspVal : 236 | !!!!!!:||| yLeuPheGluVal 194794 : CTTGTTCGAAGTG : 194807 vulgar: gi|805766386|ref|XP_003700842.2| 19 236 . KQ414889.1 194165 194807 + 198 M 21 63 G 2 0 M 127 381 G 1 0 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194166 194807 198 + . gene_id 23 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194166 194807 . + . KQ414889.1 exonerate:protein2genome:local exon 194166 194807 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 194166 194807 198 + . alignment_id 23 ; Query gi|805766386|ref|XP_003700842.2| ; Align 194166 20 63 ; Align 194229 43 381 ; Align 194610 171 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 193 Query range: 283 -> 405 Target range: 286812 -> 287252 284 : IleCysPheThrGluLeuCysGlnCysThrMetSerIleCysPheLeuCysTyrTyrI : 303 :!:|||!:! !.!. ! ..!...! !!!::!!.!! !.!.! !! ! ! : LeuCysTyrTyrHisThrValMetAlaIleIleAlaPheValMetTyrSerLeuSerV 286813 : TTGTGTTATTACCATACTGTAATGGCAATAATTGCATTCGTCATGTACTCGTTGTCAG : 286870 304 : leLeuThrGluTrpHisGluHisAspIleHisAsnLeuThrThrTyrValIleIleLe : 322 !!!!! !||||||.!.:!! !!!:! ! ... !! !|||||| !! :!:|| alPhe***GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLe 286871 : TTTTCTAGGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCT : 286927 323 : uValSerValThrPheAsnValPheIleMetCysTyrValGlyGluLeuLeuThrLys : 341 ||||||| !!||||||||||||||||||:!:||||||:!!||||||:!!|||:!!:!! uValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGlu 286928 : GGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAA : 286984 342 : Gln >>>> Target Intron 1 >>>> CysAsnArgIleAlaAspValIleTy : 351 ||| 74 bp ||| !:!:!!!.! !! !|| Gln++ ++CysLeuLysValGlyLeuSerThrTy 286985 : Caggt.........................agtGCTTAAAAGTCGGCTTGTCAACTTA : 287088 352 : rSerThrAsnTrpTyrTyrLeuProCysLysAsnValLeuAspLeuThrValIleIle : 370 |! !! !:!!|||||| !|||||| ! |||!..!.!! !! !|||! !:!!|||.!! rMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePhe 287089 : CATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTC : 287145 371 : ThrArgSerSerMetValThrLysIleThrAlaGlyLysIleIleTyrMetSerMetT : 390 .!! !|||!:! !! !|||:!!|||||||||||||||||| !!:!:|||:!: AlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuS 287146 : GCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAA : 287205 391 : yrThrPheGlyAlaValLeuLysThrSerPheThrTyrLeuAsnIle : 405 !!:!||| !!::!||| !! ! !!:!!!.:!!|||! !:!!:!: erSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 287206 : GCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 287252 vulgar: gi|805766386|ref|XP_003700842.2| 283 405 . KQ414889.1 286812 287252 + 193 M 59 177 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286813 287252 193 + . gene_id 24 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286813 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286813 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286813 287252 193 + . alignment_id 24 ; Query gi|805766386|ref|XP_003700842.2| ; Align 286813 284 177 ; Align 287064 343 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 190 Query range: 341 -> 399 Target range: 254271 -> 254445 342 : GlnCysAsnArgIleAlaAspValIleTyrSerThrAsnTrpTyrTyrLeuProCysL : 361 |||||| !:!:!!!.!!!:|||:!!|||! !|||:!!||||||||||||||| ! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 362 : ysAsnValLeuAspLeuThrValIleIleThrArgSerSerMetValThrLysIleTh : 380 :!!..:!!|||||||||! !:!!|||||||||||||||!:!:!!|||..!:!!||||| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 381 : rAlaGlyLysIleIleTyrMetSerMetTyrThrPheGlyAlaValLeuLysThrSer : 399 |||||||||||||...:::||||||:!:||||||||||||! !||| !:!!|||!:! rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 254443 vulgar: gi|805766386|ref|XP_003700842.2| 341 399 . KQ414889.1 254271 254445 + 190 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254445 190 + . gene_id 25 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254445 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254445 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254445 190 + . alignment_id 25 ; Query gi|805766386|ref|XP_003700842.2| ; Align 254272 342 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 188 Query range: 341 -> 399 Target range: 238625 -> 238799 342 : GlnCysAsnArgIleAlaAspValIleTyrSerThrAsnTrpTyrTyrLeuProCysL : 361 |||||| !:!:!!!.!!!:|||:!!|||! !|||:!!||||||||||||||| ! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 362 : ysAsnValLeuAspLeuThrValIleIleThrArgSerSerMetValThrLysIleTh : 380 :!!..:!!|||||||||! !:!!||||||! !||||||!:!:!!|||..!|||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 381 : rAlaGlyLysIleIleTyrMetSerMetTyrThrPheGlyAlaValLeuLysThrSer : 399 ||||||||||:!!:!!:!!||||||:!:||||||||||||! !||| !:!!|||!:! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 vulgar: gi|805766386|ref|XP_003700842.2| 341 399 . KQ414889.1 238625 238799 + 188 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238799 188 + . gene_id 26 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238799 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238799 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238799 188 + . alignment_id 26 ; Query gi|805766386|ref|XP_003700842.2| ; Align 238626 342 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 176 Query range: 305 -> 404 Target range: 291368 -> 292578 306 : GluTrpHisGluHisAspIleHisAsnLeuThrThrTyrValIleIleLeuValSerV : 325 ||||||.!.... !||| !...:!! !|||||||||! !:!!|||..!||| GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 326 : alThrPheAsnValPheIleMetCysTyrValGlyGluLeuLeuThr<->Lys >>> : 342 !!|||||||||:!!.!.|||.!.||||||||||||||||||||| ! :!! heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln++ 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAGgt... : 291482 343 : > Target Intron 1 >>>> GlnCysAsnArgIleAlaAspValIleTyrSerT : 353 910 bp ||| !!!:!..!|||||| !!!.! !|||..!| +-GlnGlySerGluIleAlaHisAlaSerTyrAspT 291483 : ......................acCAGGGTAGTGAAATCGCGCACGCTTCCTACGATA : 292423 354 : hrAsnTrpTyrTyrLeuProCysLysAsnValLeuAspLeuThrValIleIleThrAr : 372 ||.!.|||||| !!|||||| ! ::!!!.!.!! !|||:!!..!:!!:!::!!.!!! hrGluTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIl 292424 : CAGAATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCAT : 292480 373 : gSerSerMetValThrLysIleThrAlaGlyLysIleIleTyrMetSerMetTyrThr : 391 !!!!!.! !! !|||:!!|||||||||||||||.!! !:!:|||:!! !!||| eThrLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThr 292481 : AACGAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACT : 292537 392 : PheGlyAlaValLeuLysThrSerPheThrTyrLeuAsn : 404 ||||||||||||! !:!!:!!!.!.!...!! :!!:!! PheGlyAlaValArgGluSerLysLeuValLeuIleHis 292538 : TTTGGCGCTGTACGTGAATCAAAACTAGTCTTGATACAC : 292578 vulgar: gi|805766386|ref|XP_003700842.2| 305 404 . KQ414889.1 291368 292578 + 176 M 35 105 G 0 3 M 1 3 5 0 2 I 0 906 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 292578 176 + . gene_id 27 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292389 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 292388 292389 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 292390 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 292578 176 + . alignment_id 27 ; Query gi|805766386|ref|XP_003700842.2| ; Align 291369 306 105 ; Align 291477 341 3 ; Align 292390 342 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 305 -> 409 Target range: 206050 -> 207604 306 : GluTrpHisGluHisAspIleHisAsnLeuThrThrTyrValIleIleLeuValSerV : 325 ||||||.!..!.:!!:!!! ! :!!! !..!|||:!!! :!:! !:!!||| GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 326 : alThrPheAsnValPheIleMetCysTyrValGlyGluLeuLeuThrLysGln >>> : 343 !|||||| !|||||||||:!:||||||:!!|||:!!||||||! ! ! ||| ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 344 : > Target Intron 1 >>>> CysAsnArgIleAlaAspValIleTyrSerThrA : 354 81 bp !:!! !:!:!.! ..! !! !!!!..!| ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 355 : snTrpTyrTyrLeuProCysLysAsnValLeuAspLeuThrValIleIleThrArgSe : 373 |||||||| !|||||| !!:!:!!!.!! !..!:!!! !:!!||||||.!!! !|| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 374 : rSerMetValThrLysIleThrAlaGlyLysIleIleTyrMetSerMetTyrThrPhe : 392 |!:! !! !|||:!!||||||||||||!!:.!! ! ||||||:!: !!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 393 : GlyAla >>>> Target Intron 2 >>>> ValLeuLysThrSerPheThrTy : 402 !! ! 1161 bp |||:!!|||..!:!!.!. !|| ThrAsp++ ++ValMetLysValAlaMetGlyTy 206391 : ACCGATgt.........................agGTAATGAAGGTGGCGATGGGATA : 207581 403 : rLeuAsnIleLeuArgGlnMet : 409 |!!!||||||||||||:!!:!: rPheAsnIleLeuArgGluVal 207582 : CTTCAACATACTCCGTGAAGTC : 207604 vulgar: gi|805766386|ref|XP_003700842.2| 305 409 . KQ414889.1 206050 207604 + 172 M 37 111 5 0 2 I 0 77 3 0 2 M 52 156 5 0 2 I 0 1157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 207604 172 + . gene_id 28 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206398 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206398 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206399 206400 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206399 207559 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 207558 207559 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 207560 207604 . + . KQ414889.1 exonerate:protein2genome:local exon 207560 207604 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 207604 172 + . alignment_id 28 ; Query gi|805766386|ref|XP_003700842.2| ; Align 206051 306 111 ; Align 206243 343 156 ; Align 207560 395 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 21 -> 162 Target range: 299689 -> 300114 22 : TyrSerLeuGlnLeuAsnArgTrpLeuLeuLysProIleGlyValTrpPro<->LysS : 40 |||!!!||||||:!! !!:!|||||||||||||||||||||||||||! ! !. TyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpArgLeuLeuA 299690 : TACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGCGATTGCTAG : 299747 41 : erPheTyrThrSerAsnIleGluLysIleValSerLeuIleSerAsnMetIleCysTy : 59 .! !:!!|||!!.:!:||| ! :!!||||||:!!:!! !! ! ||||||!: spGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMetThrIleCysPh 299748 : ATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATGACAATATGCTT : 299804 60 : rCysSerIleValIleThrValValProCysIleLeuHisLeuThrPheGluAspIle : 78 !! !|||:!: !!.!!! !|||:!!|||! ! !! !:!!:!! !|||! !!!:! ! eSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePhePheAlaGluLys 299805 : CTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCTTCGCGGAGAAA : 299861 79 : AspPheArgThrLysLeuLysValPheGlyProMetThrHisTrpPheAlaGlyGlyI : 98 ..!.!.!.!..!|||:!!|||||||||||||||:!: ! !!! .!!:!!..! !: SerIleHisValLysValLysValPheGlyProValGlyPheCysLeuSerSerIleV 299862 : AGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCATCG : 299921 99 : leAsnTyrThrThrLeuLeuValArgGlyGluGluIleArgHisCysMetLysGlnMe : 117 !!!!.||| ! !|||! !:!!!.!|||! ! !.!!..!!..|||!!::!!!!.:! alLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCysIleGlnHisVa 299922 : TCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGCATCCAACACGT : 299978 118 : tGlnAsnAspTrpArgThrValSerSerProGluVal--GlnGlnValMetLeuLysA : 136 ::!!!..||| ... ...... !..!:!!##!:: !:!!||||||!:! lGluArgAsp---UnkUnkUnkUnkUnkUnkArgIle##ArgThrIleMetLeuArgT 299979 : CGAGAGAGAC---NNNNNNNNNNNNNNNNTTCGAATCATCGTACGATCATGTTGAGAT : 300034 137 : spAlaLysPheGlyArgAsnMetAlaThrPheCysThrValPheMetGlnGlyGlyVa : 155 !!!.!! .!..!!||||||:!!.!!||| ! |||.!!||||||:!: ! !.!|||! yrValThrMetSerArgAsnLeuThrThrValCysAlaValPheLeuTyrAlaGlyGl 300035 : ACGTGACTATGAGCAGAAATCTGACGACCGTGTGCGCCGTGTTTCTTTACGCAGGTGG : 300091 156 : lLeuCysTyrCysAlaAlaMet : 162 !:!!! ||| !.!!!.!||| yMetSerTyrHisThrValMet 300092 : TATGTCGTATCACACGGTGATG : 300114 vulgar: gi|805766386|ref|XP_003700842.2| 21 162 . KQ414889.1 299689 300114 + 170 M 17 51 G 0 3 M 82 246 G 1 0 M 8 24 F 0 2 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299690 300114 170 + . gene_id 29 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299690 300114 . + . KQ414889.1 exonerate:protein2genome:local exon 299690 300114 . + . insertions 3 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local similarity 299690 300114 170 + . alignment_id 29 ; Query gi|805766386|ref|XP_003700842.2| ; Align 299690 22 51 ; Align 299744 39 246 ; Align 299990 122 24 ; Align 300016 130 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 340 -> 401 Target range: 283273 -> 283456 341 : LysGlnCysAsnArgIleAlaAspValIleTyrSerThrAsnTrpTyrTyrLeuProC : 360 ::!||||||!!.!:!:!!!.!!!:|||:!!|||! !||||||! !!:!||||||||| ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 361 : ysLysAsnValLeuAspLeuThrValIleIleThrArgSerSerMetValThrLysIl : 379 !|||:!!:!!|||:!!||| !:!!||||||:!!|||||||||:::||| ||||| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 380 : eThrAlaGlyLysIleIleTyrMetSerMetTyrThrPheGlyAlaValLeuLysThr : 398 |||||||...|||:::||| |||||| !|||||||||! !! !|||! !..! ! eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspValArgSerLeu 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTACGTTCACTT : 283445 399 : SerPheThr : 401 !|||||| LeuPheThr 283446 : CTTTTTACA : 283456 vulgar: gi|805766386|ref|XP_003700842.2| 340 401 . KQ414889.1 283273 283456 + 167 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283456 167 + . gene_id 30 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283456 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283456 167 + . alignment_id 30 ; Query gi|805766386|ref|XP_003700842.2| ; Align 283274 341 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 21 -> 125 Target range: 303196 -> 303502 22 : TyrSerLeuGlnLeuAsnArgTrpLeuLeuLysProIleGlyValTrpProLysSerP : 41 ||| ! !:!!! !!:!!:!|||:!!|||||| !!:!!|||:!!|||||| TyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTrpProAla---- 303197 : TACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTGGCCAGCC---- : 303251 42 : heTyrThrSerAsnIleGluLysIleValSerLeuIleSerAsnMetIleCysTyrCy : 60 !..!.!.! !! ! !.!!:!! !! !|||!!!! ! :!! !! !!! --ValLeuAspGluThrAlaGlyPheLeuProLysIleThrIleGlyLeuSerAsnLe 303252 : --GTGTTGGACGAAACCGCAGGATTCCTACCAAAAATCACCATTGGACTCAGTAATTT : 303305 61 : sSerIleValIleThrValValProCysIleLeuHisLeuThrPheGluAspIleAsp : 79 !:!!:!!.!!||||||:!!|||||||||||||||:!!! !||||||.!.! ||| uValLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnLysAsp 303306 : GGTTCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAAAGGAT : 303362 80 : PheArgThrLysLeuLysValPheGlyProMetThrHisTrpPheAlaGlyGlyIleA : 99 ! !! !!:!||||||:!!||||||! !:!!!:! !!! !!. !..! !!!:! ThrIleIleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLeuMetL 303363 : ACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTTGATGA : 303422 100 : snTyrThrThrLeuLeuValArgGlyGluGluIleArgHisCysMetLysGlnMetGl : 118 !.||| !.!!||| !..!||| ! !..!|||!:!.!.|||!!::!!:!!:!!|| ysTyrTrpAlaLeuAlaThrArgLysProArgIleLysGluCysIleGluGluValGl 303423 : AGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAGGTGCA : 303479 119 : nAsnAspTrpArgThrValSer : 125 |!:!||||||!:! !|||||| nSerAspTrpLysGluValSer 303480 : AAGTGATTGGAAAGAGGTGAGT : 303502 vulgar: gi|805766386|ref|XP_003700842.2| 21 125 . KQ414889.1 303196 303502 + 150 M 18 54 G 2 0 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303197 303502 150 + . gene_id 31 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 303197 303502 . + . KQ414889.1 exonerate:protein2genome:local exon 303197 303502 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 303197 303502 150 + . alignment_id 31 ; Query gi|805766386|ref|XP_003700842.2| ; Align 303197 22 54 ; Align 303251 42 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 302 -> 342 Target range: 264528 -> 264648 303 : IleLeuThrGluTrpHisGluHisAspIleHisAsnLeuThrThrTyrValIleIleL : 322 :!!!!! !||||||.!....|||||||||...||||||||||||||| !!!!:|||| ValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleL 264529 : GTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATAC : 264586 323 : euValSerValThrPheAsnValPheIleMetCysTyrValGlyGluLeuLeuThrLy : 341 ||:!!|||:!! ! !|||:!!|||:!!|||||||||:!!||||||:!!||||||:! euIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGl 264587 : TGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGA : 264643 342 : sGln : 342 !||| uGln 264644 : Gcag : 264648 vulgar: gi|805766386|ref|XP_003700842.2| 302 342 . KQ414889.1 264528 264648 + 144 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264529 264648 144 + . gene_id 32 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264529 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264529 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264529 264648 144 + . alignment_id 32 ; Query gi|805766386|ref|XP_003700842.2| ; Align 264529 303 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 188 -> 253 Target range: 202712 -> 202907 189 : LeuIleProValAspThrSerProThrAsnGluIleValLeuAlaValGlnValLeuA : 208 :!!||| !||| !||||||..!||||||||| !!!!!:!!:!!!:!:!!:!!| IleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleValA 202713 : ATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAG : 202770 209 : laAlaIleIleValAsnCysThrValValGlyAlaPheSerLeuAlaIleValPheAl : 227 ||!.!|||:!!:!!:!! !!..!..!|||||||||! !!!!|||.!! :!!||||| laValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAl 202771 : CTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGC : 202827 228 : aAlaHisAlaHisGlyGlnLeuAspValLeuAsnMetTrpIleThrGluPheValAsp : 246 |!.!|||! ! !||||||:!!|||||||||! |||:!: !.!.!!.:!!||| aValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMetAsp 202828 : GGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGAT : 202884 247 : GlnSerArgAsnSerSerLys : 253 !! !:!!! !|||||| GlyArgSerAspMetSerLys 202885 : GGTCGTTCGGATATGAGTAAA : 202907 vulgar: gi|805766386|ref|XP_003700842.2| 188 253 . KQ414889.1 202712 202907 + 126 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202713 202907 126 + . gene_id 33 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202713 202907 . + . KQ414889.1 exonerate:protein2genome:local exon 202713 202907 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202713 202907 126 + . alignment_id 33 ; Query gi|805766386|ref|XP_003700842.2| ; Align 202713 189 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 300 -> 342 Target range: 214614 -> 214740 301 : TyrTyrIleLeuThrGluTrpHisGluHisAspIleHisAsnLeuThrThrTyrValI : 320 ::: |||||| ||||||:!!..!:!!:!!:!! !.! !..!|||||||||: PheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValV 214615 : tttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGG : 214672 321 : leIleLeuValSerValThrPheAsnValPheIleMetCysTyrValGlyGluLeuLe : 339 !::!:! !:!!|||:::|||||||||:::||||||...||||||:!!|||||||||:! alLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuVa 214673 : TGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGGCGAGCTTGT : 214729 340 : uThrLysGln : 342 !:!!:!!||| lSerGluGln 214730 : GTCTGAACAG : 214740 vulgar: gi|805766386|ref|XP_003700842.2| 300 342 . KQ414889.1 214614 214740 + 124 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214615 214740 124 + . gene_id 34 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214615 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214615 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214615 214740 124 + . alignment_id 34 ; Query gi|805766386|ref|XP_003700842.2| ; Align 214615 301 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 305 -> 353 Target range: 224323 -> 224467 306 : GluTrpHisGluHisAspIleHisAsnLeuThrThrTyrValIleIleLeuValSerV : 325 |||||| ... !!:!! !!:! !..!|||||| !!|||:!!|||:!!|||: GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 326 : alThrPheAsnValPheIleMetCysTyrValGlyGluLeuLeuThrLysGlnCysAs : 344 ::|||||||||:::||||||...||||||::!|||||||||:!!.!!:!!||| .. euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlnValLy 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggtgaa : 224438 345 : nArgIleAlaAspValIleTyrSerThr : 353 ....... :::...:::::!||| sAsnPheLeuLysLeuPhePheThrThr 224439 : aaattttttaaaattattcttcacCACT : 224467 vulgar: gi|805766386|ref|XP_003700842.2| 305 353 . KQ414889.1 224323 224467 + 118 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224467 118 + . gene_id 35 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224324 224467 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224467 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224467 118 + . alignment_id 35 ; Query gi|805766386|ref|XP_003700842.2| ; Align 224324 306 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 305 -> 346 Target range: 238411 -> 238534 306 : GluTrpHisGluHisAspIleHisAsnLeuThrThrTyrValIleIleLeuValSerV : 325 |||||| ||| !||| ! ! ! !|||! !|||||| !!:!! !||||||:!!: GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheValAlaLeuValAlaI 238412 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTGTAGCACTCGTTGCTA : 238469 326 : alThrPheAsnValPheIleMetCysTyrValGlyGluLeuLeuThrLysGlnCysAs : 344 !!..!! !|||..!||||||:!:||||||:!!.!!||| !||||||:!!||| .! leValSerAsnThrPheIleLeuCysTyrIleSerGluArgLeuThrGluGlnValGl 238470 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGAAAGGCTGACAGAACAGGTACA : 238526 345 : nArgIle : 346 ...!||| nGluIle 238527 : AGAGATT : 238534 vulgar: gi|805766386|ref|XP_003700842.2| 305 346 . KQ414889.1 238411 238534 + 103 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238412 238534 103 + . gene_id 36 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238412 238534 . + . KQ414889.1 exonerate:protein2genome:local exon 238412 238534 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238412 238534 103 + . alignment_id 36 ; Query gi|805766386|ref|XP_003700842.2| ; Align 238412 306 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765798|ref|XP_003700909.2| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1334 Query range: 31 -> 426 Target range: 194138 -> 198627 32 : TyrArgAsnAlaSerTyrLysLeuAspThrGluTyrThrIleArgPheProLysAlaL : 51 |||||||||!.!!:!|||||||||||||||||||||.!!:!!||| ! !!||||||| TyrArgAsnValAsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaL 194139 : TACCGCAACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGC : 194196 52 : euLeuThrProIleGlyIleTrpProLeuTyrGlnAspAspThrAlaLeuArgLysTh : 70 |||||||||||||||||||||||||| ::!!!:|||:!! !! ! !!:!.. euLeuThrProIleGlyIleTrpPro------ArgGluAspSerLeuArgAspArgVa 194197 : TTCTAACACCGATCGGTATCTGGCCA------AGGGAGGATTCTCTTCGCGACAGAGT : 194247 71 : rArgArgGlnValGlnIleAlaLeuIlePheCysSerMetCysPheLeuLeuIlePro : 89 !|||! ! !.!|||! !!.!:!!:!!|||..!! !|||||||||||||||:!!||| lArgLeuPheAlaGlnThrGlyValValPheAlaLeuMetCysPheLeuLeuValPro 194248 : CCGACTGTTCGCTCAAACTGGCGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCT : 194304 90 : HisAlaIleTyrThrTyrHisAspCysGluAspLeuLysArgTyrMetLysValIleA : 109 |||!.!|||||||||||| !|||||||||||||||! !||||||||||||||||||| HisValIleTyrThrTyrPheAspCysGluAspLeuThrArgTyrMetLysValIleA 194305 : CACGTGATCTACACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCG : 194364 110 : laAlaGlnValPheSerLeuLeuGlyIleValLysPheTrpThrIleIleIleAsnLy : 128 |||||||||||||||||||||||!.!|||:!!||||||||||||!!:|||:!:|||!: laAlaGlnValPheSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnAr 194365 : CGGCGCAAGTGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAG : 194421 129 : sAsnGluIleSerPheCysLeuThrGluLeuGluLeuGlnTyrArgAspValGluCys : 147 !!!.||||||!!!||||||||| !|||:!!||| !||||||||||||||||||||| gLysGluIleArgPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCys 194422 : GAAAGAGATCAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGC : 194478 148 : GluGluAspArgLysLeuIleArgGluSerAlaLysIleGlyArgPhePheAlaIleL : 167 ||||||||||||:!!:!!!!:! !.!.!!!|||||||||||||||||||||.!!! !| GluGluAspArgGlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrL 194479 : GAGGAGGATCGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCC : 194538 168 : euTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisLeuIleLeuProLeuLe : 186 |||||||||||||||||||||||||||||||||||||||||:!!||||||||||||:! euTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMe 194539 : TGTACTTGGGACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGAT : 194595 187 : uSerGluLysValValLysSerAspAsnThrThrGlnIleProLeuProTyrLeuSer : 205 !||||||!:!:!!||||||..!||||||!:!||||||||||||||||||||||||||| tSerGluArgIleValLysGluAspAsnSerThrGlnIleProLeuProTyrLeuSer 194596 : GTCGGAGAGGATTGTCAAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGC : 194652 206 : AsnTyrValPhePheValIleGluAspSerProPheTyrGluMetThrPheAlaPheG : 225 |||||||||||||||!.!|||||||||||||||.!!||||||!!:||||||!.!! | AsnTyrValPhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerG 194653 : AACTATGTTTTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGC : 194712 226 : lnMetPheIleSerIleIleIleLeuSerThrAsnCysGlyIleTyrIleLeuIleAl : 244 ||!!:.!.||||||! !||||||||||||||||||||||||||||||! !|||:!!|| lnIleLeuIleSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAl 194713 : AGATACTGATTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGC : 194769 245 : aGlyIleThrMetHisCysSerGlyLeuPheGluValIleAsnArgLysIleAspLeu : 263 | !|||! !|||||||||!!!|||||||||||||||! !!:!|||!:!!!:!!: ! aThrIleIleMetHisCysCysGlyLeuPheGluValThrSerArgArgMetGluThr 194770 : TACTATTATTATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGATGGAGACT : 194826 264 : PheMetLysGluThrAsnGlyLysLeuArgAspArgLeuArgPheIleIleGlnArgH : 283 .!! ! |||... ! ! :!!|||! !||||||||| !:!!:!!||| !| IleSerValProThrGlyLysAspIleArgGlyArgLeuArgAspValValGlnPheH 194827 : ATTTCTGTGCCCACTGGGAAGGATATTCGGGGTAGACTTAGGGACGTCGTTCAGTTTC : 194886 284 : isValGlnAlaThr{Gl} >>>> Target Intron 1 >>>> {u}TyrAlaAl : 291 ||:!!:!!|||! !{:!} 1391 bp {!}::!|||! isLeuLysAlaIle{Ly}++ ++{s}PheAlaGl 194887 : ATCTGAAAGCAATT{AA}gt.........................ag{a}tTCGCTGA : 196301 292 : aMetIleGluLysThrPheAsnValValPheLeuSerGluMetLeuGlyAsnThrVal : 310 !||||||||||||.!!.!.|||:!!|||||||||||||||||||||||| !|||:!! uMetIleGluLysAlaLeuAsnIleValPheLeuSerGluMetLeuGlyCysThrIle 196302 : AATGATCGAGAAAGCACTGAACATCGTGTTTCTATCAGAGATGCTTGGCTGCACTATC : 196358 311 : IleIleCysPheLeuGluTyrGlyValLeuVal >>>> Target Intron 2 >> : 322 |||||||||||||||||||||||||||:!!||| 65 bp IleIleCysPheLeuGluTyrGlyValIleVal++ 196359 : ATCATATGTTTCCTGGAATACGGTGTAATCGTGgt....................... : 196396 323 : >> GluTrpGluAspHisLysThrLeuSerThrMetThrTyrPheIleLeuMetThr : 339 !!:|||! ||||||||||||||||||! !||||||||||||:!!||||||||| ++AspTrpAlaAspHisLysThrLeuSerMetMetThrTyrPheValLeuMetThr 196397 : ..agGATTGGGCCGATCACAAGACACTCAGCATGATGACGTACTTCGTTCTGATGACA : 196510 340 : SerIleLeuSerAsnValPheIleIleSerPheIleGlyAspArgLeuLysGlnVal : 359 ||||||!!! !||||||||||||||||||||||||||||||||||||||||||||| SerIlePheValAsnValPheIleIleSerPheIleGlyAspArgLeuLysGlnVal+ 196511 : TCGATATTCGTGAACGTGTTCATAATCTCGTTCATCGGTGATCGTCTTAAACAAGTgg : 196570 360 : >>>> Target Intron 3 >>>> SerThrArgValGlyArgThrAlaTyrPhe : 368 82 bp ||| !|||||||||..!|||:!!|||||| + ++SerGluArgValGlyGluThrSerTyrPhe 196571 : t.........................agAGCGAAAGAGTAGGCGAAACGTCGTACTTC : 196679 369 : LeuProTrpPheGluLeuProMetAspValValLysAspValSerMetValIleLeuA : 388 :!!||||||!:!!!:|||||| |||:!!!.!|||:!!:!!!!!! !:!!||||||| MetProTrpTyrAspLeuProAspAspLeuAlaLysAsnIleArgThrIleIleLeuA 196680 : ATGCCGTGGTACGATCTTCCGGACGATTTAGCCAAGAATATAAGAACGATCATACTAA : 196739 389 : rgThrSerArgProSerSerLeuSerAlaGlyLysLeuPheAspLeuSerLeuGlnGl : 407 ||.!!|||!.!|||||||||||||||!.!!.!||||||||||||||||||||||||!. rgAlaSerHisProSerSerLeuSerGlyAlaLysLeuPheAspLeuSerLeuGlnAl 196740 : GAGCCAGTCATCCGTCAAGTTTGTCTGGCGCCAAGTTGTTCGATCTTTCGCTTCAAGC : 196796 408 : yPheCysAsp >>>> Target Intron 4 >>>> ValPheLysThrSerAlaA : 417 !||||||||| 1772 bp |||! !||||||||||||| aPheCysAsp++ ++ValCysLysThrSerAlaA 196797 : ATTTTGCGACgt.........................agGTTTGCAAAACTTCTGCGG : 198598 418 : laTyrLeuAsnPheLeuArgThrMetThr : 426 |||||...|||||||||:::.!!|||||| laTyrPheAsnPheLeuGlnAlaMetThr 198599 : CctacttcaattttctacaagCAATGACA : 198627 vulgar: gi|805765798|ref|XP_003700909.2| 31 426 . KQ414889.1 194138 198627 + 1334 M 28 84 G 2 0 M 226 678 S 0 2 5 0 2 I 0 1387 3 0 2 S 1 1 M 33 99 5 0 2 I 0 61 3 0 2 M 37 111 5 0 2 I 0 78 3 0 2 M 52 156 5 0 2 I 0 1768 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194139 198627 1334 + . gene_id 1 ; sequence gi|805765798|ref|XP_003700909.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 194139 194902 . + . KQ414889.1 exonerate:protein2genome:local exon 194139 194902 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 194903 194904 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 194903 196293 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 196292 196293 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 196294 196393 . + . KQ414889.1 exonerate:protein2genome:local exon 196294 196393 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 196394 196395 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 196394 196458 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 196457 196458 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 196459 196569 . + . KQ414889.1 exonerate:protein2genome:local exon 196459 196569 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 196570 196571 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 196570 196651 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 196650 196651 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 196652 196807 . + . KQ414889.1 exonerate:protein2genome:local exon 196652 196807 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 196808 196809 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 196808 198579 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 198578 198579 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 198580 198627 . + . KQ414889.1 exonerate:protein2genome:local exon 198580 198627 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194139 198627 1334 + . alignment_id 1 ; Query gi|805765798|ref|XP_003700909.2| ; Align 194139 32 84 ; Align 194223 62 678 ; Align 196295 289 99 ; Align 196459 322 111 ; Align 196652 359 156 ; Align 198580 411 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765798|ref|XP_003700909.2| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 242 Query range: 23 -> 257 Target range: 208155 -> 208860 24 : ArgSerIleIleSerAlaMetValTyrArgAsnAlaSerTyrLysLeuAspThrGluT : 43 |||!!! !! ! ! !...:!!!:!! !||| !!:!|||||| !||| !...! ArgCysAlaThrMetArgGlnIlePheLeuAsnArgAsnTyrLysAsnAspLeuSerP 208156 : CGATGTGCAACGATGAGACAAATATTCCTCAACAGAAACTACAAGAACGATCTGAGCT : 208213 44 : yrThrIleArgPheProLysAlaLeuLeuThrProIleGlyIleTrpProLeuTyrGl : 62 :!!.!:!!|||.!. ! ! ! !|||! ! !|||||| !|||||| !! ! heAsnValArgLeuAsnValTrpThrLeuLysIleIleGlySerTrpProArgSerIl 208214 : TCAACGTTCGTCTGAACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTAT : 208270 63 : nAspAspThrAlaLeuArgLysThrArgArgGlnValGlnIleAlaLeuIlePheCys : 81 !||| !:!! !|||..!!!.!:!!:!!.! :!! !! !!.!|||! ! !||| eAspArgSerTrpLeuGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCys 208271 : AGATCGTTCCTGGTTAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGT : 208327 82 : SerMetCysPheLeuLeuIleProHisAlaIleTyrThrTyrHisAspCysGluAspL : 101 ! !:!: !!|||:!!:!!|||||| !!.!!!:!:!.!! !! !! !||||||! LeuLeuGlyPheIleValIleProThrGlyMetPheAlaIleLeuValValGluAspP 208328 : TTGCTCGGTTTCATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATT : 208387 102 : euLysArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuGlyIleValLy : 120 !! ! ! ! :!:|||:!! !::!|||! ! !|||! !:!!:!!!.!.!!..!|| heTyrAspGlnLeuLysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLy 208388 : TTTACGACCAATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAA : 208444 121 : sPheTrpThrIleIleIleAsnLysAsnGluIleSerPheCysLeuThrGluLeuGlu : 139 |!:! !! !!!:! !:!!..!:!!..!!!:||| !! |||:!! ! ! :!!||| sTyrValIleMetThrValArgGluGlyAspIleArgLysCysValGluTyrValGlu 208445 : GTACGTGATCATGACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAG : 208501 140 : LeuGlnTyrArgAspValGluCysGluGluAspArgLysLeuIleArgGluSerAlaL : 159 !.!.!::|||:!!|||||| !|||||||||||||||:!!!!: !!!:!:!|||! AlaAspTrpArgAsnValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaS 208502 : GCTGATTGGAGAAACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGA : 208561 160 : ysIleGlyArgPhePheAlaIleLeuTyrLeuGlyLeuSerTyrGlyGlyAlaLeuPr : 178 ...!!!.!||| .!. !:!::!!! ! !!.!!!!! !|||||||||...::: erPheAlaArgLysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePh 208562 : GTTTCGCCAGGAAACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaatttt : 208618 179 : oTyrHisLeuIleLeuProLeuLeuSerGluLysValVal<->LysSerAspAsnThr : 196 |||::::!! !||||||||| ! !!!!:||||||||| :!!.!!! !||| ! eTyrTyrIleAlaLeuProLeuThrArgAspLysValValGluGluGlyGlyAsnLeu 208619 : ctattacaTCGCTTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTG : 208675 197 : ThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheValIleGluAspSerP : 216 ||| ! ! ! !||| !|||! ! ! ! ! !!.!!.!.! !:!!..! !!|||| ThrTyrArgArgLeuValTyrProValProLysPheIleLeuAspValArgTyrSerP 208676 : ACGTACAGAAGGCTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTC : 208735 217 : roPheTyrGluMetThrPheAlaPheGlnMetPheIleSerIleIleIleLeuSerTh : 235 || ! !!|||!!: !!:!.!! ! |||:!!!!. .!!.!!:!! !! !!:!! roValAsnGluIlePheTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIl 208736 : CTGTGAATGAGATTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATAT : 208792 236 : rAsnCysGlyIleTyrIleLeuIleAlaGlyIleThrMetHisCysSerGlyLeuPhe : 254 !!.. !||| !! ! !||| !||| !:!!.!!||||||...!!!|||! !.!. eThrValGlyAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeu 208793 : CACGGTTGGGGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTG : 208849 255 : GluValIle : 257 :!!:!!:!: GlnIleLeu 208850 : CAGATTTTG : 208860 vulgar: gi|805765798|ref|XP_003700909.2| 23 257 . KQ414889.1 208155 208860 + 242 M 168 504 G 0 3 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208156 208860 242 + . gene_id 2 ; sequence gi|805765798|ref|XP_003700909.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208156 208860 . + . KQ414889.1 exonerate:protein2genome:local exon 208156 208860 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208156 208860 242 + . alignment_id 2 ; Query gi|805765798|ref|XP_003700909.2| ; Align 208156 24 504 ; Align 208663 192 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765798|ref|XP_003700909.2| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 232 Query range: 39 -> 269 Target range: 204227 -> 204914 40 : AspThrGluTyrThrIleArgPheProLysAlaLeuLeuThrProIleGlyIleTrpP : 59 ||| !..!|||.!!! !|||||| !||| !!:!!||| ! !:!!||| |||| AspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaTrpP 204228 : GACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGTGGC : 204285 60 : roLeuTyrGlnAspAspThrAlaLeuArgLysThrArgArgGlnValGlnIleAlaLe : 78 ||:!! !:!!..!:!! !!!!!! !!:! ! !|||!:!:!!:!! !!.!:! roIleProValAsnSerSerProPheThrArgLeuValArgArgIleGluHisValVa 204286 : CGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGTAGT : 204342 79 : uIlePheCysSerMetCysPheLeuLeuIleProHisAlaIleTyrThrTyrHisAsp : 97 !! !::: ... ...:!!:!!:!!||| ! !:!:|||..!!:!! ! lThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheLeuLys 204343 : CACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTGAAG : 204399 98 : CysGluAspLeuLysArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuG : 117 :!!:!! !|||! ! !:!!|||:!!:!!!.! !! ||| !!!! !:!! GluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSerIleG 204400 : GAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCATAC : 204459 118 : lyIleValLysPheTrpThrIleIleIleAsnLysAsnGluIleSerPheCysLeuTh : 136 !.!! !!|||!:!! ..!|||:!! !...! :!!:!!|||..! !!|||!. lnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSerLeuAs 204460 : AGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGTTTGAA : 204516 137 : rGluLeuGluLeuGlnTyrArgAspValGluCysGluGluAspArgLysLeuIleArg : 155 ! :!!..!! !.!.!::! !!!:!.! !!:|||:!!||| !:!!.!!||| nThrIleArgArgAspTrpIleGluAla---ThrAspGluAsnArgLeuIlePheArg 204517 : CACCATCAGACGCGACTGGATAGAGGCT---ACGGATGAAAATCGGTTGATTTTCCGC : 204570 156 : GluSerAlaLysIleGlyArgPhePheAlaIleLeuTyrLeuGlyLeuSerTyrGlyG : 175 ..!!.!||||||||||||||| ! !:!::!! !!.! !! !||||||| SerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetTyrGlyG 204571 : TCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGTACGGCG : 204630 176 : lyAlaLeuProTyrHisLeuIleLeuProLeuLeuSerGluLysValValLysSerAs : 194 ||!.!||| !|||... !|||||||||||||||!!!! !! !:!!|||! ! !!|| lyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleValThrProAs 204631 : GTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTAACACCTGA : 204687 195 : pAsnThrThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheValIleGlu : 213 ||||..!||| !! |||||||||! !! ! ! :::||||||||| :!! pAsnValThrIleArgProLeuProCysProValTyrPheValPhePheAsnGluGln 204688 : TAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaacGAGCAA : 204744 214 : AspSerProPheTyrGluMetThrPheAlaPheGlnMetPheIleSerIleIleIleL : 233 !|||||| !||||||!!:..!||| !.!.|||!!:.!. !.!!.!!:!!! !! ArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheValThrT 204745 : CGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTGTTACTT : 204804 234 : euSerThrAsnCysGlyIleTyrIleLeuIleAlaGlyIleThrMetHisCysSerGl : 252 !:!!..!! ! !!|||! !! ! !:!! !||| !.!!..!:!:|||...!!!.! yrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAlaCysSe 204805 : ACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGCGTGCAG : 204861 253 : yLeuPheGluValIleAsnArgLysIleAspLeuPheMetLysGluThrAsn : 269 !:!!.!...!:!!:!: !.!|||!!::!! !.!!:!! ! :!!.!!:!! rMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAlaAsp 204862 : CATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCGGAC : 204914 vulgar: gi|805765798|ref|XP_003700909.2| 39 269 . KQ414889.1 204227 204914 + 232 M 106 318 G 1 0 M 123 369 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204228 204914 232 + . gene_id 3 ; sequence gi|805765798|ref|XP_003700909.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204228 204914 . + . KQ414889.1 exonerate:protein2genome:local exon 204228 204914 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 204228 204914 232 + . alignment_id 3 ; Query gi|805765798|ref|XP_003700909.2| ; Align 204228 40 318 ; Align 204546 147 369 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765798|ref|XP_003700909.2| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 232 Query range: 4 -> 331 Target range: 226816 -> 228205 5 : SerLeuGlnLeuPheLysGluSerSerProHisGlnLysHisTyrIleLysHisTyrA : 24 ..!||| !|||!.. |||..! !! !:!!:::.!. !!!:||| ! ! | GluLeuAlaThrPheSerIleSerGlnThrValGluArgGluThrMetLysLysGlnA 226817 : GAGCTAGCTACATTTAGTATCAGCCAGACTGTCGAGCGTGAAACCATGAAAAAACAGC : 226874 25 : rgSerIleIleSerAlaMetValTyrArgAsnAlaSerTyrLysLeuAspThrGluTy : 43 ||||| ! ! !||| :!! ! !.!. !..!|||:!! ! !! !.!. rgSerAlaAsnLeuAlaSerLeuAlaThrGluAsnAspTyrGlnGluTyrLeuAsnLe 226875 : GATCGGCGAACCTCGCGTCTCTCGCGACAGAGAACGACTATCAGGAATACTTGAACCT : 226931 44 : rThrIleArgPheProLysAlaLeuLeuThrProIleGlyIleTrpProLeuTyrGln : 62 !:!|||!:!!!. !::: !||||||! !|||:!!||||||||||||! !! !:: uSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArg 226932 : GAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGC : 226988 63 : AspAspThrAlaLeuArgLysThrArgArgGlnValGlnIleAlaLeuIlePheCysS : 82 ! ..!:!! !:!! !!!:! ! ! ! !:!!..! ! !||| !!:!... LysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaL 226989 : AAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGC : 227048 83 : erMetCysPheLeuLeuIleProHisAlaIleTyrThrTyrHisAspCysGluAspLe : 101 !||| !!||| !|||:!! !! !!.!:!:|||..! !! !!: :!!! ! euMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAl 227049 : TGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGC : 227105 102 : uLysArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuGlyIleValLys : 120 ! ! !.! :!!|||:!!|||!.! !!..! !|||! ! !:!!..!:!!:!!||| aTyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuLys 227106 : TTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAG : 227162 121 : PheTrpThrIleIleIleAsnLysAsnGluIleSerPheCysLeuThrGluLeuGluL : 140 !:!! ! !:!:! .!!:!!:!!:!!!!:||| ! |||:!! !..!:!!:!!! TyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIleLysT 227163 : TACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAAT : 227222 141 : euGlnTyrArgAspValGluCysGluGluAspArgLysLeuIleArgGluSerAlaLy : 159 !.!.!::!:!:!!:!!..!! ! !|||||||||!!.:!!!!: ! !! !||| ! rpAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTy 227223 : GGGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTA : 227279 160 : sIleGlyArgPhePheAlaIleLeuTyrLeuGlyLeuSerTyrGlyGlyAlaLeuPro : 178 !|||||| !!. !! !:!!! ! ! !!!! !!:!...... ::: rTyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheValPhe 227280 : TTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtattt : 227336 179 : TyrHisLeuIleLeuProLeuLeuSerGluLysValValLysSerAsp<->AsnThrT : 197 :::::::!!:!!:!!|||:!! !:!!! !!..|||!.!! !..!||| ||| !! PheTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisS 227337 : ttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACA : 227396 198 : hrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheValIleGluAspSerPr : 216 :! ! |||! !:!!|||!:!! !! ! ! :!!.!! !! !:!!... !!||||| erTyrIleGlnMetProPheProPheProLysIleIleAlaAspValArgTyrSerPr 227397 : GTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCC : 227453 217 : oPheTyrGluMetThrPheAlaPheGlnMetPheIleSerIleIleIleLeuSerThr : 235 |||| !!|||!!: !|||:!! ! |||.!. ! ! !.!!|||:!::!:! !.!!..! oPheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuHisGlyVal 227454 : TTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTC : 227510 236 : AsnCysGlyIleTyrIleLeuIleAlaGlyIleThrMetHisCysSerGlyLeuPheG : 255 !..! !.! !! !! !:!! !||| !:!!.!!:!:|||..!!!!|||! !.!.| ThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetG 227511 : ACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGG : 227570 256 : luValIleAsnArgLysIleAspLeuPheMet<-><-><->LysGluThrAsnGlyLy : 271 |||||:!: ! !:!:! ! !!!.!!: !!!:! !!:! !! luValLeuValSerTrpLeuGlyHisLeuIleAspGlyArgAlaAspMetSerLysTh 227571 : AGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGCAGAGCGGATATGAGCAAAAC : 227627 272 : sLeuArgAspArgLeuArgPheIleIleGlnArgHisValGlnAlaThr{Gl} >>> : 288 !||| !||||||:!! ! !|||:!! !.!||||||!:! ! !{.!} rLeuAspAspArgIleAlaSerIleValThrHisHisValArgIleLeu{As}++ 227628 : ACTGGATGATAGAATCGCTAGCATCGTCACTCACCACGTTCGAATATTG{AA}gt... : 227682 289 : > Target Intron 1 >>>> {u}TyrAlaAlaMetIleGluLysThrPheAsnV : 299 396 bp {.}!:! !|||:!:||||||||||||.!..!. ++{n}PheLeuAlaLeuIleGluLysThrMetGlnG 227683 : ......................ag{C}TTTCTGGCCCTCATAGAGAAAACCATGCAGC : 228107 300 : alValPheLeuSerGluMetLeuGlyAsnThrValIleIleCysPheLeuGluTyrGl : 318 !:!! !!!! !|||.!.|||||| !|||:!!|||:!:|||.!!:!!|||||| lnIleAlaPheValGluPheLeuGlyCysThrIleIleLeuCysLeuIleGluTyrTy 228108 : AAATAGCTTTCGTAGAATTTTTAGGGTGTACAATAATTCTGTGCCTCATCGAGTATTA : 228164 319 : yValLeuValGluTrpGluAspHisLysThrLeuSerThr : 331 !:!!:!!..!! ! ! ::: |||||| ||| rIleIleThrValArgThrAsnLysLysThrLysLeuThr 228165 : CATCATAACGGTACGcacgaataaaaaaacaaagttaaCG : 228205 vulgar: gi|805765798|ref|XP_003700909.2| 4 331 . KQ414889.1 226816 228205 + 232 M 190 570 G 0 3 M 71 213 G 0 9 M 22 66 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226817 228205 232 + . gene_id 4 ; sequence gi|805765798|ref|XP_003700909.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226817 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226817 227679 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228205 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228205 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226817 228205 232 + . alignment_id 4 ; Query gi|805765798|ref|XP_003700909.2| ; Align 226817 5 570 ; Align 227390 195 213 ; Align 227612 266 66 ; Align 228077 289 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765798|ref|XP_003700909.2| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 218 Query range: 35 -> 257 Target range: 221357 -> 222026 36 : SerTyrLysLeuAspThrGluTyrThrIleArgPheProLysAlaLeuLeuThrProI : 55 ..!|||||| !:!!..!:!!! !:!:!:!:!!!. !::: !:!!|||! !|||| AspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProI 221358 : GATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGA : 221415 56 : leGlyIleTrpProLeuTyrGlnAspAspThrAlaLeuArgLysThrArgArgGlnVa : 74 |||||:!!|||||| !! :!! !:!!.!!:!!..!!:! !! ! ! !:! leGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLe 221416 : TCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 75 : lGlnIleAlaLeuIlePheCysSerMetCysPheLeuLeuIleProHisAlaIleTyr : 93 ! !! !!.!:!! !!:! !! !!!: |||||||||:!!||| !::!:!!||| uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 94 : ThrTyrHisAspCysGluAspLeuLysArgTyrMetLysValIleAlaAlaGlnValP : 113 ..! !! !!!: ||||||:!! ! !.! !!:|||:!!:!:!.! !! ! !| ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 114 : heSerLeuLeuGlyIleValLysPheTrpThrIleIleIleAsnLysAsnGluIleSe : 132 ||!!!:!!:!!!.!.!!:!!|||!:! !:!:|||:!! !!:!!|||!!:||| ! heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 133 : rPheCysLeuThrGluLeuGluLeuGlnTyrArgAspValGluCysGluGluAspArg : 151 ! |||:!! !...:!!|||! !.!.!::!:!:!!:!! ! !...:!!|||!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 152 : LysLeuIleArgGluSerAlaLysIleGlyArgPhePheAlaIleLeuTyrLeuGlyL : 171 ! :!!!!:! !|||!:!|||! .!!|||||| !!. !!!::!!! ! ! !! AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 172 : euSerTyrGlyGlyAlaLeuProTyrHisLeuIleLeuProLeuLeuSerGluLysVa : 190 !!! !|||.!!||| ::: |||:::::! !:!!|||!!! ! !! |||:! heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 191 : lValLysSerAsp<->AsnThrThrGlnIleProLeuProTyrLeuSerAsnTyrVal : 208 ! ! !..!||| |||...||| ||||||:!! !!:!! !! !::: !! eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 209 : PhePheValIleGluAspSerProPheTyrGluMetThrPheAlaPheGlnMetPheI : 228 .!! !!! !! !..! !!|||||| ! !!|||!!: !|||:!!.!!|||!!:.!. IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 229 : leSerIleIleIleLeuSerThrAsnCysGlyIleTyrIleLeuIleAlaGlyIleTh : 247 .!! !:!:!!:! !|||! !!..! !.! !! !! !|||:!!||| !.!!.! laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 248 : rMetHisCysSerGlyLeuPheGluValIle : 257 !:!!|||..!!!!|||! !.!.:!!|||:!: aValHisAlaCysGlyGlnMetGlnValLeu 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTG : 222026 vulgar: gi|805765798|ref|XP_003700909.2| 35 257 . KQ414889.1 221357 222026 + 218 M 159 477 G 0 3 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221358 222026 218 + . gene_id 5 ; sequence gi|805765798|ref|XP_003700909.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221358 222026 . + . KQ414889.1 exonerate:protein2genome:local exon 221358 222026 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221358 222026 218 + . alignment_id 5 ; Query gi|805765798|ref|XP_003700909.2| ; Align 221358 36 477 ; Align 221838 195 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765798|ref|XP_003700909.2| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 217 Query range: 33 -> 271 Target range: 278549 -> 279275 34 : AsnAlaSerTyrLysLeuAspThrGluTyrThrIleArgPheProLysAlaLeuLeuT : 53 :!!:!!!!!!::!!. !||| ! !|||!:!:!!!:!.!. !::: !!!!|||! AspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuL 278550 : GATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCA : 278607 54 : hrProIleGlyIleTrpProLeuTyrGlnAspAspThrAlaLeuArgLysThrArgAr : 72 !|||||||||:!!||||||||| !! !! |||.!!|||..!|||! !!!! ysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSe 278608 : AACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTC : 278664 73 : gGlnValGlnIleAlaLeuIlePheCysSerMetCysPheLeuLeuIleProHisAla : 91 ! !|||! !:!!! !! !! ! !!!: !!|||||||||:!!||| !||| rValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAla 278665 : CGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCT : 278721 92 : IleTyrThrTyrHisAsp<->CysGluAspLeuLysArgTyrMetLysValIleAlaA : 110 :!:! !||| ! !||| !! |||||| ! ! ! ! !!:|||:!!|||!.! LeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyP 278722 : CTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTC : 278781 111 : laGlnValPheSerLeuLeuGlyIleValLysPheTrpThrIleIleIleAsnLysAs : 129 !!! ! !|||!!! !:!!!.!! :!!|||!:!!::! !:!!!!: ..! .. roLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGl 278782 : CTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGG : 278838 130 : nGluIleSerPheCysLeuThrGluLeuGluLeuGlnTyrArg<-><-><->AspVal : 145 !:!!|||.!! |||:!!!.!!!::!!... !.!.!:: ! ... ! yLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyr 278839 : CAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTAT : 278895 146 : GluCysGluGluAspArgLysLeuIleArgGluSerAlaLysIleGlyArgPhePheA : 165 ... ||||||:::|||:::::::!:|||!!:||||||!:!|||||||||! !!!.| ArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuA 278896 : CGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGG : 278955 166 : laIleLeuTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisLeuIleLeuPr : 184 |||||!!! ! !|||!!!! !|||..!|||!.!:!! !||| ! !:!::!!|| laIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetPr 278956 : CGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCC : 279012 185 : oLeuLeuSerGluLysValValLysSerAspAsnThrThrGlnIleProLeuProTyr : 203 ||||!!!:!!! !:::..!! !! ! !|||||| !||| !! ! !!! ! !!!:! oLeuPheAlaValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPhe 279013 : GTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTC : 279069 204 : LeuSerAsnTyrValPhePheValIleGluAspSerProPheTyrGluMetThrPheA : 223 ! !! ! !! !! !.!!.!!! ! ... !||||||! !:!|||!!:..! ProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnP 279070 : CCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAAT : 279129 224 : laPheGlnMetPheIleSerIleIleIleLeuSerThrAsnCysGlyIleTyrIleLe : 242 !.!.||| !!. !:!!.!!:!!:!!! !|||..!!.! !||| !! !! !|| heMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLe 279130 : TCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTT : 279186 243 : uIleAlaGlyIleThrMetHisCysSerGlyLeuPheGluValIleAsnArgLysIle : 261 |||||||! !.!!..!|||||| !!!!|||! !|||..!:!!:!! ! !|||:!: uIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeu 279187 : GATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTG : 279243 262 : AspLeuPheMetLysGluThrAsnGlyLys : 271 ||| !.!!!!: ! ! !..!!!.|||!:! AspLysLeuIleAspGlyValLysGlyArg 279244 : GATAAGCTCATCGACGGAGTGAAAGGGAGG : 279275 vulgar: gi|805765798|ref|XP_003700909.2| 33 271 . KQ414889.1 278549 279275 + 217 M 64 192 G 0 3 M 46 138 G 0 9 M 128 384 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278550 279275 217 + . gene_id 6 ; sequence gi|805765798|ref|XP_003700909.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278550 279275 . + . KQ414889.1 exonerate:protein2genome:local exon 278550 279275 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278550 279275 217 + . alignment_id 6 ; Query gi|805765798|ref|XP_003700909.2| ; Align 278550 34 192 ; Align 278745 98 138 ; Align 278892 144 384 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765798|ref|XP_003700909.2| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 216 Query range: 33 -> 271 Target range: 284496 -> 286225 34 : AsnAlaSerTyrLysLeuAspThrGluTyrThrIleArgPheProLysAlaLeuLeuT : 53 :!!:!!!!!!:: ! !||| ! !|||!:!:!!!:!.!. !::: !!!!|||! AspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuL 284497 : GATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCA : 284554 54 : hrProIleGlyIleTrpProLeuTyrGlnAspAspThrAlaLeuArgLysThrArgAr : 72 !|||||||||:!!||||||||| !! !! |||.!!|||..!|||! !!!! ysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSe 284555 : AACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTC : 284611 73 : gGlnValGlnIleAlaLeuIlePheCysSerMetCysPheLeuLeuIleProHisAla : 91 ! !|||! !:!!! !! !! ! !!!: !!|||||||||:!!||| !||| rValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAla 284612 : CGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCT : 284668 92 : IleTyrThrTyrHisAsp<->CysGluAspLeuLysArgTyrMetLysValIleAlaA : 110 :!:! !||| ! !||| !! |||||| ! ! ! ! !!:|||:!!|||!.! LeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyP 284669 : CTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTC : 284728 111 : laGlnValPheSerLeuLeuGlyIleValLysPheTrpThrIleIleIleAsnLysAs : 129 !!! ! !|||!!!:!!:!!!.! :!!|||!:!!::! !:!!||| ..! .. roLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGl 284729 : CTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGG : 284785 130 : nGluIleSerPheCysLeuThrGluLeuGluLeuGln{Ty} >>>> Target Int : 142 !:!!|||.!! |||:!!! !!!::!!... !.!.{!:} 1012 b yLysIleGlyGlnCysValLysAspIleArgAlaAsp{Tr}++ 284786 : CAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGAC{TG}gt............... : 284828 143 : ron 1 >>>> {r}ArgAspValGluCysGluGluAspArgLysLeuIleArgGluS : 157 p {:}! !... !... ||||||:::|||:::::::!:|||!!:| +-{p}LeuSerHisSerGlnGluGluGluArgGluIleMetArgAspS 284829 : ..........ac{G}CTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACA : 285881 158 : erAlaLysIleGlyArgPhePheAlaIleLeuTyrLeuGlyLeuSerTyrGlyGlyAl : 176 |||||!:!|||||||||! !!!.||||||!!!! ! !|||!!!! !|||..!|||!. erAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGl 285882 : GCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGG : 285938 177 : aLeuProTyrHisLeuIleLeuProLeuLeuSerGluLysValValLysSerAspAsn : 195 !!!! !||| ! !:!::!!||||||! !!!!! !:::..!! !! ! !|||||| yPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIleAspAsn 285939 : ATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAAC : 285995 196 : ThrThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheValIleGluAspS : 215 !||| !! ! !!! ! !!!:!! !! ! !! !! !.!!.!!! ! ... !| GluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrS 285996 : GAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCA : 286055 216 : erProPheTyrGluMetThrPheAlaPheGlnMetPheIleSerIleIleIleLeuSe : 234 |||||! !:!|||!!:..! !.!.||| !!. !:!!.!!:!!|||! !|| erProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSe 286056 : GCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTC : 286112 235 : rThrAsnCysGlyIleTyrIleLeuIleAlaGlyIleThrMetHisCysSerGlyLeu : 253 |..!!.! !||| !! !! !||| !|||! !.!!..!|||||| !!!!|||! ! rValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGlyGln 286113 : GGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAA : 286169 254 : PheGluValIleAsnArgLysIleAspLeuPheMetLysGluThrAsnGlyLys : 271 |||..!:!!:!! ! !|||:!:||| !.!!:!: ! ! !..!!!.|||!:! PheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLysGlyArg 286170 : TTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGAGG : 286225 vulgar: gi|805765798|ref|XP_003700909.2| 33 271 . KQ414889.1 284496 286225 + 216 M 64 192 G 0 3 M 44 132 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 129 387 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284497 286225 216 + . gene_id 7 ; sequence gi|805765798|ref|XP_003700909.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284497 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284497 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286225 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286225 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284497 286225 216 + . alignment_id 7 ; Query gi|805765798|ref|XP_003700909.2| ; Align 284497 34 192 ; Align 284692 98 132 ; Align 285839 143 387 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765798|ref|XP_003700909.2| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 201 Query range: 33 -> 257 Target range: 274356 -> 275031 34 : AsnAlaSerTyrLysLeuAspThrGluTyrThrIleArgPheProLysAlaLeuLeuT : 53 !.!|||!:!!:! ! ! !!:!!!:|||!:!:!:!:!!!. !::! !!!!|||! ThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuL 274357 : ACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGA : 274414 54 : hrProIleGlyIleTrpProLeuTyrGlnAspAspThrAlaLeuArgLysThrArgAr : 72 !||||||||| ||||||||| !..! ! !||| !!!!..!::!! !! ! ysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLeuSe 274415 : AGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTC : 274471 73 : gGlnValGlnIleAlaLeuIlePheCysSerMetCysPheLeuLeuIleProHisAla : 91 !!!.::: ||| ||| ::!|||! !!!: !! ! !:!!|||||| ! ! rHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIle 274472 : ACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATA : 274528 92 : IleTyrThrTyrHisAspCysGluAspLeuLysArgTyrMetLysValIleAlaAlaG : 111 .!!:!!! ! ! ! !|||..!||| ! ! ! ! :!!|||:!!:!!!.! !!! PheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProL 274529 : TTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTC : 274588 112 : lnValPheSerLeuLeuGlyIleValLysPheTrpThrIleIleIleAsnLysAsnGl : 130 ! ! !!!!!!!:!!||| !:!!!!.!:! |||:!::!::!!..!!..!!.|| euGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGl 274589 : TCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGA : 274645 131 : uIleSerPheCysLeuThrGluLeuGluLeuGlnTyrArgAspValGluCysGluGlu : 149 |||| !! !|||:!! !.!.:!!:!! !.!.!::||| !||| ! !||| uIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGlu 274646 : GATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAG : 274702 150 : AspArgLysLeuIleArgGluSerAlaLysIleGlyArgPhePheAlaIleLeuTyrL : 169 |||!:!:!!:!!!!: !:!!!:!|||||||||||||||!:! !!||||||!!!! ! AspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysA 274703 : GATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTG : 274762 170 : euGlyLeuSerTyrGlyGlyAlaLeuProTyrHisLeuIleLeuProLeuLeuSerGl : 188 !!.!!!!! ! ! !!|||!.!||| !||| !:!!||| ! !!!!! !! !:! laAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGl 274763 : CGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCA : 274819 189 : uLysVal<->ValLysSerAspAsnThrThrGlnIleProLeuProTyrLeuSerAsn : 206 !! ||| ||| !!:!!!:!.!! !||| ! ! !||||||! ! !:!! !! nThrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyr 274820 : GACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTAC : 274876 207 : TyrValPhePheValIleGluAspSerProPheTyrGluMetThrPheAlaPheGlnM : 226 ! !.!! !!!.!:!:!!: |||||| !!|||!!:..!.!!|||! |||. LysLysIleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnP 274877 : AAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAAT : 274936 227 : etPheIleSerIleIleIleLeuSerThrAsnCysGlyIleTyrIleLeuIleAlaGl : 245 !. ! .!!.!!|||:!: !|||!:! !||| !!:!! !||| !|||! heValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaVa 274937 : TCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGT : 274993 246 : yIleThrMetHisCysSerGlyLeuPheGluValIle : 257 !.!!.!! |||..!! !|||! !!!....|||:!: lPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeu 274994 : GTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTG : 275031 vulgar: gi|805765798|ref|XP_003700909.2| 33 257 . KQ414889.1 274356 275031 + 201 M 157 471 G 0 3 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274357 275031 201 + . gene_id 8 ; sequence gi|805765798|ref|XP_003700909.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274357 275031 . + . KQ414889.1 exonerate:protein2genome:local exon 274357 275031 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274357 275031 201 + . alignment_id 8 ; Query gi|805765798|ref|XP_003700909.2| ; Align 274357 34 471 ; Align 274831 191 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765798|ref|XP_003700909.2| PREDICTED: odorant receptor 49b-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 195 Query range: 39 -> 220 Target range: 294678 -> 295224 40 : AspThrGluTyrThrIleArgPheProLysAlaLeuLeuThrProIleGlyIleTrpP : 59 |||..!! ! !!!:!:!!!:!!:! !::! !||||||! !|||||||||:!!|||| AspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpP 294679 : GACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGC : 294736 60 : roLeu<->TyrGlnAspAspThrAlaLeuArgLysThrArgArgGlnValGlnIleAl : 77 ||||| |||... !! !!:! !|||!.!|||..!! ! ! !:!!! !||||| roLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAl 294737 : CACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGC : 294793 78 : aLeuIlePheCysSerMetCysPheLeuLeuIleProHisAlaIleTyrThrTyrHis : 96 |! ! ! ! !!!:!: |||:!!|||:!:||| !!.! !!:! ! ! aTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCysValPhe 294794 : GTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTC : 294850 97 : AspCysGluAspLeuLysArgTyrMetLysValIleAlaAlaGlnValPheSerLeuL : 116 !! :::::::::||| ||||||:!!:!:!.! !! !:!!!:!|||:!!| HisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetL 294851 : CACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGC : 294910 117 : euGlyIleValLysPheTrpThrIleIleIleAsnLysAsnGluIleSerPheCysLe : 135 ||..!!!::!!!:!!:! ! !:!!:!!:!:!!.! ! !! !.!!!.! !|||:! euSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCysIl 294911 : TCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCAT : 294967 136 : uThrGluLeuGluLeuGlnTyrArgAspValGluCysGluGluAspArgLysLeuIle : 154 ! !!!::!!||| !.!.!::!:! :!!!!: ! !||| !!||| !:!!!!: eGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIleMet 294968 : CGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATG : 295024 155 : ArgGluSerAlaLysIleGlyArgPhePheAlaIleLeuTyrLeuGlyLeuSerTyrG : 174 ! !:!!!:!|||! !:!! !!:! .!..!!:!! !!:! ! !:!!! !|||. IleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleIleTyrS 295025 : ATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACA : 295084 175 : lyGlyAlaLeuProTyrHisLeuIleLeuProLeuLeuSerGluLysValValLysSe : 193 !!..!|||:!! !!|||||| !|||:::|||......|||... :!!! !!!.!. erSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGluAsnLy 295085 : GTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGAGAACAA : 295141 194 : rAspAsnThrThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheValIle : 212 ! ! |||!.!||| ! !!|||||| !! !.!! !! ! :!!||| ! ! ! ! sLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheValAspAla 295142 : GAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCT : 295198 213 : GluAspSerProPheTyrGluMet : 220 ! ..!|||||| !||||||!!: TyrSerSerProThrTyrGluIle 295199 : TATTCCAGTCCTACCTACGAGATC : 295224 vulgar: gi|805765798|ref|XP_003700909.2| 39 220 . KQ414889.1 294678 295224 + 195 M 21 63 G 0 3 M 160 480 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294679 295224 195 + . gene_id 9 ; sequence gi|805765798|ref|XP_003700909.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294679 295224 . + . KQ414889.1 exonerate:protein2genome:local exon 294679 295224 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294679 295224 195 + . alignment_id 9 ; Query gi|805765798|ref|XP_003700909.2| ; Align 294679 40 63 ; Align 294745 61 480 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 967 Query range: 0 -> 335 Target range: 204389 -> 207607 1 : MetPheLeuLysThrLysSerGlyGlnValArgLeuLysValPheGlyProIleLeuA : 20 :!!||||||||| !|||!:!|||:!!:!!|||||||||:!!.!!|||||||||:!!| ValPheLeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValA 204390 : GTGTTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGA : 204447 21 : snCysCysMetGlnPheIleLysTyrThrIleLeuLeuLeuArgSerLysGlnIleAr : 39 ||||| !!!!:||||||.!!||||||:!!:!!:!!|||! !|||! ! ! :!!|||!: snCysSerIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGl 204448 : ACTGCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCA : 204504 40 : gAspCysLeuAspValIleArgGlnAspTrpIleGluAlaThrGluGluAspArgSer : 58 ! ! !!|||:!!..!||||||!::||||||||||||||||||!!:|||:!!|||! ! nLysSerLeuAsnThrIleArgArgAspTrpIleGluAlaThrAspGluAsnArgLeu 204505 : GAAGAGTTTGAACACCATCAGACGCGACTGGATAGAGGCTACGGATGAAAATCGGTTG : 204561 59 : IleLeuHisSerArgGlyMetLeuGlyArgLysLeuIleLeuThrValMetLeuThrL : 78 |||!!!!.!|||!:!!.!! !:!!||||||!:!:!!:!:|||! !!.! !|||: IlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrM 204562 : ATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTA : 204621 79 : euTyrGlyGlyGlyLeuCysTyrArgThrIleIleProLeuMetLysGlyProIleTh : 97 !!||||||||||||||||||||||||||||||:!!||||||:!!!:!||| !!|||.. etTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleVa 204622 : TGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGT : 204678 98 : rLeuProAsnAsnValThrIleArgProMetAlaCysAlaGlyTyrPheValPheIle : 116 ! !|||:!!||||||||||||||||||:!! !!||| !!! !||||||||||||... lThrProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePhe 204679 : AACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttcttt : 204735 117 : AsnGluGlnGlnThrProThrTyrGluIleValPheThrLeuGlnPhePheSerGlyI : 136 |||||||||!:::!!|||!.!|||||||||||||||! !||||||.!!.!.:!!|||. AsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyP 204736 : aacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTT : 204795 137 : leIleThrTyrAlaThrSerSerGlySerTyrGlyIlePheThrValPheValLeuHi : 155 !!:!!|||||||||..!! !||||||!!!! !|||!!:! !.!!:!!||||||||||| heValThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHi 204796 : TTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCA : 204852 156 : sValCysSerLeuLeuArgMetLeuAsnLysLysMetLysSerLeuAspGluGlyAla : 174 |!.!||||||:!!||||||!!:||| !!.||||||!!.:!!|||! !!: !||| sAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAla 204853 : CGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCG : 204909 175 : AspLeuSerGluArgThrValAsnHisLysIleAlaAspIleValGluHisGluArgL : 194 |||:!!!!!|||! ! !|||:!!...|||||||||||||||||||||:!!:!!! !| AspMetThrGluThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrL 204910 : GACATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGA : 204969 195 : ysIleLys{Gl} >>>> Target Intron 1 >>>> {y}PhePheGluAsnVa : 202 ||||||||{ !} 905 bp {!}|||!!.:!!|||:! ysIleLys{Ar}++ ++{g}PheLeuLysAsnIl 204970 : AGATAAAG{AG}gt.........................ag{A}TTTTTAAAGAACAT : 205898 203 : lGluAlaIleThrGlnTyrIleCysPheValAspIleMetGlyAsnThrCysLeuIle : 221 !|||.!!||||||:!!|||||||||!!...!!!:!!::!!|||..!||| !!|||:!! eGluThrIleThrGluTyrIleCysLeuThrGluMetValGlyGlyThrGlyLeuVal 205899 : TGAAACAATTACAGAGTACATTTGTTTAACCGAAATGGTGGGCGGTACGGGTCTAGTA : 205955 222 : CysLeuMetGlyTyrArgIleIleThr >>>> Target Intron 2 >>>> Gl : 231 ||||||:!! !||| !|||:!!! ! 66 bp || CysLeuValTyrTyrTyrIleLeuMet++ ++Gl 205956 : TGTCTCGTGTATTATTACATTCTCATGgt.........................agGA : 206051 232 : uProGlnLysSerAspProMetPheIleThrIleCysIleIleLeuGlnThrSerPhe : 250 | !:!!!!.!:!:!! !!! :!!! !:!:! !|||! ||||||! !|||! ! uTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerCys 206052 : ATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTTGT : 206108 251 : IlePheCysSerPheIleLeuCysTyrIleGlyGlnLeuLeuValAspGlu >>>> : 268 ! !|||||| !||||||||||||||||||||||||||||||:!!|||:!! ThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : ACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt..... : 206164 269 : Target Intron 3 >>>> AsnAsnValValGlyMetThrSerValMetLeuAsp : 279 81 bp |||:!!|||||||||:!!|||||| !! !:!!:!! ++AsnHisValValGlyLeuThrSerCysThrValAsn 206165 : ....................agAACCACGTCGTGGGATTGACATCTTGCACGGTGAAT : 206276 280 : TrpTyrArgLeuProIleLysLysAlaArgCysLeuValLeuIleIleAlaMetSerA : 299 |||||||||||||||! !!:! ! ||||||! !:!!:!!||||||||||||||||||| TrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSerA 206277 : TGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTCTA : 206336 300 : snTyrProMetGlnLeuThrAlaGlyLysIleValGluIleSerLeuValThrPheTh : 318 ||||||||!!::!!|||||||||||||||!!: !!|||!!:||||||!.!!:!||||| snTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPheTh 206337 : ATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTCAC : 206393 319 : rAsp >>>> Target Intron 4 >>>> IleMetLysMetSerMetAlaTyrL : 328 |||| 1161 bp :!!||||||:!!:!!|||!.!|||! rAsp++ ++ValMetLysValAlaMetGlyTyrP 206394 : CGATgt.........................agGTAATGAAGGTGGCGATGGGATACT : 207584 329 : euAsnIleLeuArgGluValVal : 335 !!||||||||||||||||||||| heAsnIleLeuArgGluValVal 207585 : TCAACATACTCCGTGAAGTCGTA : 207607 vulgar: gi|805765819|ref|XP_003700910.2| 0 335 . KQ414889.1 204389 207607 + 967 M 196 588 S 0 2 5 0 2 I 0 901 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 52 156 5 0 2 I 0 1157 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204390 207607 967 + . gene_id 1 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 204390 204979 . + . KQ414889.1 exonerate:protein2genome:local exon 204390 204979 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 204980 204981 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 204980 205884 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 205883 205884 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 205885 205984 . + . KQ414889.1 exonerate:protein2genome:local exon 205885 205984 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 205985 205986 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 205985 206050 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 206049 206050 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206398 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206398 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206399 206400 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206399 207559 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 207558 207559 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 207560 207607 . + . KQ414889.1 exonerate:protein2genome:local exon 207560 207607 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 204390 207607 967 + . alignment_id 1 ; Query gi|805765819|ref|XP_003700910.2| ; Align 204390 1 588 ; Align 205886 198 99 ; Align 206051 231 111 ; Align 206243 268 156 ; Align 207560 320 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 380 Query range: 3 -> 330 Target range: 278741 -> 280465 4 : LysThrLysSerGlyGlnValArgLeuLysValPheGlyProIleLeuAsnCysCysM : 23 |||||| ..! !.!...!!:!:!!|||:!!.!!||||||:!! ! !||| | LysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrM 278742 : AAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGA : 278799 24 : etGlnPheIleLysTyrThrIleLeuLeuLeuArgSerLysGlnIleArgAspCysLe : 42 || ! ||||||||| !||||||:!!! !|||.!! :!!||| !! ! |||:! etAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysVa 278800 : TGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGT : 278856 43 : uAspValIleArgGlnAspTrp<-><-><-><->IleGluAlaThrGluGluAspArg : 57 !:!!! !|||||| !|||||| ! ||||||:::||| lAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArg 278857 : GAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagaga : 278913 58 : SerIleLeuHisSerArgGlyMetLeuGlyArgLysLeuIleLeuThrValMetLeuT : 77 ...|||:!!.....!!!!!.!! :!!||||||...||| :!! ! ! ! GluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyP 278914 : gagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTT : 278973 78 : hrLeuTyrGlyGlyGlyLeuCysTyrArgThrIleIleProLeuMetLysGlyProIl : 96 !:!!|||..!||||||:!!! !|||! !.!!:!:!!:||||||.!. !! !! !! heMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgTh 278974 : TCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCAC : 279030 97 : eThrLeuProAsnAsnValThrIleArgProMetAlaCysAlaGlyTyrPheValPhe : 115 !:!! !:!!|||! !|||:!:||| !!...|||! ! !! !||| !! !.!! rGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeu 279031 : GGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTC : 279087 116 : IleAsnGluGlnGlnThrProThrTyrGluIleValPheThrLeuGlnPhePheSerG : 135 :!!:!! !!:: !:!|||:!!!:!||||||||| !:!!|||! !!!.:!!! LeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaA 279088 : CTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCG : 279147 136 : lyIleIleThrTyrAlaThrSerSerGlySerTyrGlyIlePheThrValPheValLe : 154 .!.!!:!! !|||:!!..!!!! !|||:!!! !.!!:!:.!!.!!|||||||||:! laPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMe 279148 : CGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCAT : 279204 155 : uHisValCysSerLeuLeuArgMetLeuAsnLysLysMetLysSerLeuAspGluGly : 173 !|||||||||.!!! !!!!|||!!:||| ! !|||:!! ! !.!||| !!!:||| tHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGly 279205 : GCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGA : 279261 174 : AlaAsp<-><->LeuSerGluArgThrValAsnHisLysIleAlaAspIleValGluH : 191 !.! ! !||| !!!!||| !.!.!!.::!:!:!.!||||||:!!|||| ValLysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluH 279262 : GTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGC : 279321 192 : isGluArgLysIleLys{Gl} >>>> Target Intron 1 >>>> {y}PhePh : 199 ||.!.! !|||||| !{||} 657 bp {|}!!.|| isHisLeuLysIleLeu{Gl}++ +-{y}LeuPh 279322 : ATCATCTGAAGATACTG{GG}gt.........................at{A}TTATT : 280002 200 : eGluAsnValGluAlaIleThrGlnTyrIleCysPheValAspIleMetGlyAsnThr : 218 | ..!.!.!.!! !! !.!. !!:!!|||!:! !! !!|||:!: ! ! ! e------ThrHisGlyAsnArgAspAspLeuCysTyrPheHisIleValMetAlaLys 280003 : T------ACTCACGGTAACAGAGACGACTTATGTTATTTCCATATTGTAATGGCAAAA : 280053 219 : CysLeuIleCysLeuMetGlyTyrArgIleIleThrGluProGlnLysSerAspProM : 238 ! !.!! !:!! ..!! !:!!.!! !||| !:!!:!!!:!||| !!! IleAlaPheValMetTyrSerLeuSerValPhe***GluTrpGluGlnAsnAspAlaI 280054 : ATTGCATTCGTCATGTACTCGTTGTCAGTTTTCTAGGAATGGGAGCAAAATGACGCTA : 280113 239 : etPheIleThrIleCysIleIleLeuGlnThrSerPheIlePheCysSerPheIleLe : 257 !: ! !! ! !:!!!!:!!!! ! !|||!!.! ||| ! !|||||||| leGlyThrPheThrTyrLeuMetPheLeuIleSerLeuThrPheAsnValPheIleLe 280114 : TAGGAACGTTCACGTATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACT : 280170 258 : uCysTyrIleGlyGlnLeuLeuValAspGlu >>>> Target Intron 2 >>>> : 268 |||||||||||||:!!:!!||| !!!:::: 74 bp uCysTyrIleGlyGluIleLeuSerGluGln++ 280171 : CTGTTACATCGGTGAAATTCTCTCCGAACaggt......................... : 280205 269 : AsnAsnValValGlyMetThrSerValMetLeuAspTrpTyrArgLeuProIleLy : 286 ! !||||||:!!:!!!!! !|||:!!|||||||||||||||||| || ++CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLy 280206 : agTGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAA : 280331 287 : sLysAlaArgCysLeuValLeuIleIleAlaMetSerAsnTyrProMetGlnLeuThr : 305 |||||||!:! !!|||:!!||||||.!!|||:!!||||||! ! !!!!::!!|||||| sLysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThr 280332 : GAAAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACA : 280388 306 : AlaGlyLysIleValGluIleSerLeuValThrPheThrAspIleMetLysMetSerM : 325 ||||||||||||:!!!!::!!|||||| !!:!||| !..!:!:! ! !!:!:!: AlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnL 280389 : GCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATT : 280448 326 : etAlaTyrLeuAsnIle : 330 !::!!|||! !:!!:!: euSerTyrTyrHisLeu 280449 : TATCCTATTATCATTTG : 280465 vulgar: gi|805765819|ref|XP_003700910.2| 3 330 . KQ414889.1 278741 280465 + 380 M 46 138 G 0 12 M 126 378 G 0 6 M 21 63 S 0 2 5 0 2 I 0 653 3 0 2 S 1 1 M 2 6 G 2 0 M 66 198 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278742 280465 380 + . gene_id 2 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278742 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278742 279340 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279997 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279996 279997 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 279998 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 279998 280202 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278742 280465 380 + . alignment_id 2 ; Query gi|805765819|ref|XP_003700910.2| ; Align 278742 4 138 ; Align 278892 50 378 ; Align 279276 176 63 ; Align 279999 198 6 ; Align 280005 202 198 ; Align 280277 268 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 375 Query range: 3 -> 330 Target range: 284688 -> 287252 4 : LysThrLysSerGlyGlnValArgLeuLysValPheGlyProIleLeuAsnCysCysM : 23 |||||| ..! !.!...!!:!:!!|||:!!.!!||||||:!: ! !||| | LysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetM 284689 : AAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGA : 284746 24 : etGlnPheIleLysTyrThrIleLeuLeuLeuArgSerLysGlnIleArgAspCysLe : 42 || ! ||||||||| !||||||:!!! !|||.!! :!!||| !!.!.|||:! etAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysVa 284747 : TGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGT : 284803 43 : uAspValIleArgGlnAspTrp<-><-><-><->IleGluAlaThrGluGluAspArg : 57 ! ! ! !|||||| !|||||| .!.::: ||||||:::||| lLysAspIleArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArg 284804 : GAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagaga : 284860 58 : SerIleLeuHisSerArgGlyMetLeuGlyArgLysLeuIleLeuThrValMetLeuT : 77 ...|||:!!.....!!!!!.!! :!!||||||...||| :!! ! ! ! GluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyP 284861 : gagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTT : 284920 78 : hrLeuTyrGlyGlyGlyLeuCysTyrArgThrIleIleProLeuMetLysGlyProIl : 96 !:!!|||..!||||||!!!! !|||! !|||:!:!!:|||||| ! !! !! !! heMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgTh 284921 : TCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCAC : 284977 97 : eThrLeuProAsnAsnValThrIleArgProMetAlaCysAlaGlyTyrPheValPhe : 115 !:!! !:!!|||! !|||:!:||| !!...|||! ! !! !||| !! !.!! rGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeu 284978 : GGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTT : 285034 116 : IleAsnGluGlnGlnThrProThrTyrGluIleValPheThrLeuGlnPhePheSerG : 135 :!!:!! !!:: !:!|||:!!!:!||||||||| !:!!|||! !!!.:!!! LeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaA 285035 : CTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCG : 285094 136 : lyIleIleThrTyrAlaThrSerSerGlySerTyrGlyIlePheThrValPheValLe : 154 .!.!!:!!! !|||:!!..!!!! !|||:!!! !.!!:!: !.!!|||||||||:! laPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMe 285095 : CGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCAT : 285151 155 : uHisValCysSerLeuLeuArgMetLeuAsnLysLysMetLysSerLeuAspGluGly : 173 !|||||||||.!!! !!!!|||!!:||| ! !|||:!! ! !.!|||! !!!:||| tHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGly 285152 : GCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGA : 285208 174 : AlaAspLeuSerGluArgThrValAsnHis<-><->LysIleAlaAspIleValGluH : 191 !.! ! !!!!:!! !! ! !!..||| ::!:!:!.!||||||:!!|||| ValLysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluH 285209 : GTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGC : 285268 192 : isGluArgLysIleLys{Gl} >>>> Target Intron 1 >>>> {y}PhePh : 199 ||.!.! !|||||| !{||} 1494 bp {|}.!.!! isHisLeuLysIleLeu{Gl}++ -+{y}IleLe 285269 : ATCATCTGAAGATACTG{GG}gt.........................gg{G}ATATT : 286786 200 : eGluAsnValGluAlaIleThrGlnTyrIleCysPheValAspIleMetGlyAsnThr : 218 . !..!!!:!.!! !! !.!. !!:!:|||!:! ! !!! !:!: ! ! ! u---PheThrAspGlyAsnArgAspAspLeuCysTyrTyrHisThrValMetAlaIle 286787 : A---TTTACTGACGGTAACAGAGACGACTTGTGTTATTACCATACTGTAATGGCAATA : 286840 219 : CysLeuIleCysLeuMetGlyTyrArgIleIleThrGluProGlnLysSerAspProM : 238 ! !.!! !:!! ..!! !:!!.!! !||| !:!!:!!|||!!: !!! IleAlaPheValMetTyrSerLeuSerValPhe***GluTrpGluGlnSerGluThrI 286841 : ATTGCATTCGTCATGTACTCGTTGTCAGTTTTCTAGGAATGGGAGCAAAGTGAAACTA : 286900 239 : etPheIleThrIleCysIleIleLeuGlnThrSerPheIlePheCysSerPheIleLe : 257 !: ! ! !! ! ! !! |||! !..!||||||! ||| ! !|||||||| leGlyThrIleThrTyrCysThrLeuLeuValSerPheThrPheAsnValPheIleLe 286901 : TAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACT : 286957 258 : uCysTyrIleGlyGlnLeuLeuValAspGlu >>>> Target Intron 2 >>>> : 268 |||||||||||||:!!:!!||| !!!:::: 74 bp uCysTyrIleGlyGluIleLeuSerGluGln++ 286958 : CTGTTACATCGGTGAAATTCTCTCCGAACaggt......................... : 286992 269 : AsnAsnValValGlyMetThrSerValMetLeuAspTrpTyrArgLeuProIleLy : 286 ! !||||||:!!:!!!!! !|||:!!|||||||||||||||||| !|| ++CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLy 286993 : agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAA : 287118 287 : sLysAlaArgCysLeuValLeuIleIleAlaMetSerAsnTyrProMetGlnLeuThr : 305 |! !|||!:! !!|||:!!||||||.!!|||:!!||||||! ! !!!!::!!|||||| sThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThr 287119 : AACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACA : 287175 306 : AlaGlyLysIleValGluIleSerLeuValThrPheThrAspIleMetLysMetSerM : 325 ||||||||||||:!!!!::!!|||||| !!:!||| !..!:!:! ! !!:!:!: AlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnL 287176 : GCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATT : 287235 326 : etAlaTyrLeuAsnIle : 330 !::!!|||! !:!!:!: euSerTyrTyrHisLeu 287236 : TATCCTATTATCATTTG : 287252 vulgar: gi|805765819|ref|XP_003700910.2| 3 330 . KQ414889.1 284688 287252 + 375 M 46 138 G 0 12 M 134 402 G 0 6 M 13 39 S 0 2 5 0 2 I 0 1490 3 0 2 S 1 1 M 2 6 G 1 0 M 67 201 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284689 287252 375 + . gene_id 3 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284689 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284689 285287 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286780 286781 . + . intron_id 0 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 286782 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286782 286989 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284689 287252 375 + . alignment_id 3 ; Query gi|805765819|ref|XP_003700910.2| ; Align 284689 4 138 ; Align 284839 50 402 ; Align 285247 184 39 ; Align 286783 198 6 ; Align 286789 201 201 ; Align 287064 268 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 322 Query range: 0 -> 267 Target range: 217327 -> 219439 1 : MetPheLeuLysThrLysSerGlyGlnValArgLeuLysValPheGlyProIleLeuA : 20 :!!||||||:!!..!:!!..! ! ! ! !!:!||||||:!!|||||||||:!::!! ValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIleP 217328 : GTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCT : 217385 21 : snCysCysMetGlnPheIleLysTyrThrIleLeuLeuLeuArgSerLysGlnIleAr : 39 !||| ||| !|||:!!|||||| ! !|||:!!:!!!.!!.! !.!.||||| heCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleAr 217386 : TCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCG : 217442 40 : gAspCysLeuAspValIleArgGlnAspTrpIleGluAla<->ThrGluGluAspArg : 57 |!!:|||:!! !|||..!!:!||||||! .!.!.! !|||:!!|||||| gGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArg 217443 : CGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGG : 217499 58 : SerIleLeuHisSerArgGlyMetLeuGlyArgLysLeuIleLeuThrValMetLeuT : 77 ..! :!! !!.!!.!! !!!||||||||||||:!!||| ! !! !!! GluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPheP 217500 : GAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCT : 217559 78 : hrLeuTyrGlyGlyGlyLeuCysTyrArgThrIleIleProLeuMetLysGlyProIl : 96 !:!!|||.!!||| ::: ||| ! !||||||:!!! !||| !|| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIl 217560 : TCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAAT : 217616 97 : eThrLeuProAsn<->AsnValThrIleArgProMetAlaCysAlaGlyTyrPheVal : 114 | !! ! !||| |||:!!|||.!!! !|||:!!!.!! ! !! ! ! eLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyr 217617 : TCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTAT : 217673 115 : PheIleAsnGluGlnGlnThrProThrTyrGluIleValPheThrLeuGlnPhePheS : 134 .!!|||:!! !:: ! ||||||||| !!|||||||||||| !||||||!!..!!: IleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleA 217674 : ATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCG : 217733 135 : erGlyIleIleThrTyrAlaThrSerSerGlySerTyrGlyIlePheThrValPheVa : 153 !!||| !:!:! !:!!!.!! !!!!|||!.!:!!! !.!!:!: .!!!.!|||!. laGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAl 217734 : CTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGC : 217790 154 : lLeuHisValCysSerLeuLeuArgMetLeuAsnLysLysMetLysSerLeuAspGlu : 172 !:!!|||!.!|||.!!! !:!!..!:!!|||! !!. !:!!:!! !||| !!!: aValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAsp 217791 : GGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGAC : 217847 173 : GlyAlaAspLeuSerGluArgThrValAsnHisLysIleAlaAspIleValGluHisG : 192 ||| !! !! !... !||||||:!! !!:!||||||..!||||||...!!.. GlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnH 217848 : GGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAAC : 217907 193 : luArgLysIleLys{Gl} >>>> Target Intron 1 >>>> {y}PhePheGl : 200 !. !::!||| !{ } 1229 bp {!}|||... isValArgIleLeu{Ly}++ ++{s}PheLeuTh 217908 : ACGTTCGGATATTA{AA}gt.........................ag{a}tttttgaC : 219160 201 : uAsnValGluAlaIleThrGlnTyrIleCysPheValAspIleMetGlyAsnThrCys : 219 ! !..!||| !! ! !||| ! |||! !|||!.!!!:.!!:!:||| !||| rLeuThrGluArgThrLeuGlnGlnIleSerPheAlaGluPheLeuGlyCysThrMet 219161 : GCTCACAGAGAGAACCCTCCAGCAAATCTCTTTCGCTGAATTTCTAGGATGCACCATG : 219217 220 : LeuIleCysLeuMetGlyTyrArgIleIleThr >>>> Target Intron 2 >> : 231 !|||||||||:!:|||||| !||||||..! 76 bp AspIleCysLeuValGlyTyrTyrIleIleVal++ 219218 : GACATATGTCTCGTTGGATATTACATTATCGTGgt....................... : 219255 232 : >> GluProGlnLysSerAspProMetPheIleThrIleCysIleIleLeuGlnThr : 248 ||| !:!!..!!:!||| !! ! ! !..!! !! !|||||||||! ! ! ++GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIle 219256 : ..agGAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATA : 219380 249 : SerPheIlePheCysSerPheIleLeuCysTyrIleGlyGlnLeuLeuValAspGlu : 267 |||.!. ||| ||||||...||||||||||||:!!:!!:!!!.!!!::!: SerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln 219381 : TCCCTcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: gi|805765819|ref|XP_003700910.2| 0 267 . KQ414889.1 217327 219439 + 322 M 52 156 G 0 3 M 48 144 G 0 3 M 96 288 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217328 219439 322 + . gene_id 4 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217328 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217328 217923 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217328 219439 322 + . alignment_id 4 ; Query gi|805765819|ref|XP_003700910.2| ; Align 217328 1 156 ; Align 217487 53 144 ; Align 217634 101 288 ; Align 219154 198 99 ; Align 219329 231 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 243 Query range: 11 -> 189 Target range: 289924 -> 290458 12 : LeuLysValPheGlyProIleLeuAsnCysCysMetGlnPheIleLysTyrThrIleL : 31 :!!||| !.!!||||||:!: ! !|||! ! !|||.!!|||||| ! !! ValLysAsnLeuGlyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrP 289925 : GTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACT : 289982 32 : euLeuLeuArgSerLysGlnIleArgAspCysLeuAspValIleArgGlnAspTrpIl : 50 !! !:!!!:!.!!..! !||| !! !|||:!! ! !|||..!::!||||||! heSerMetLysGlySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLy 289983 : TCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAA : 290039 51 : eGluAlaThrGluGluAspArgSerIleLeuHisSerArgGlyMet<->LeuGlyArg : 68 ! ! !!!:||||||!.! !!:!!:!! !||| !:!! :!!.!!||| sMetLeuArgAspGluAspHisArgValIleMetLeuArgTyrValThrMetSerArg 290040 : GATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGG : 290096 69 : LysLeuIleLeuThrValMetLeuThrLeuTyrGlyGlyGlyLeuCysTyrArgThrI : 88 !!.|||||| ! ! ! !:!! !|||||| !|||||||||! !|||!.!|||: AsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrV 290097 : AATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTG : 290156 89 : leIleProLeuMetLysGlyProIleThrLeuProAsnAsnValThrIleArgProMe : 107 !!|||||||||.!...! ! ! !:!:!! !..!||||||||||||||||||:! alIleProLeuPheSerLysLys---SerValAsnGlyAsnValThrIleArgProLe 290157 : TCATACCGTTGTTCTCGAAGAAG---AGCGTGAACGGTAACGTGACTATCAGACCTCT : 290210 108 : tAlaCysAlaGlyTyrPheValPheIleAsnGluGlnGlnThrProThrTyrGluIle : 126 :.!!! ! !!|||||| ! !|||.!!:!!! |||:!!!:!|||.!!||||||||| uThrTyrProGlyTyrGluGluPhePheAspValGlnLysSerProAlaTyrGluIle 290211 : AACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATC : 290267 127 : ValPheThrLeuGlnPhePheSerGlyIleIleThrTyrAlaThrSerSerGlySerT : 146 |||||| !:!!!!.! ! !!! !! !!!:|||||| !! !!!!! !!.!:!!| ValPheCysMetHisCysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaT 290268 : GTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGT : 290327 147 : yrGlyIlePheThrValPheValLeuHisValCysSerLeuLeuArgMetLeuAsnLy : 165 ||.!!:!: |||:!!|||!.! !|||..!|||.!!! !:!!!:!!!:! !!..! yrSerLeuThrThrIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrTh 290328 : ACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGAC : 290384 166 : sLysMetLysSerLeuAspGluGlyAlaAspLeuSerGluArgThrValAsnHisLys : 184 !::!:!!:!!..!||| :!! !!!.! |||! !|||!:! !|||!:! !!::: rArgLeuGluAspLeuThrLysArgGlyMetLeuLeuGluLysGlyValSerAspArg 290385 : GCGGCTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGT : 290441 185 : IleAlaAspIleVal : 189 :!:|||! !:!!||| LeuAlaValValVal 290442 : TTGGCGGTTGTTGTG : 290458 vulgar: gi|805765819|ref|XP_003700910.2| 11 189 . KQ414889.1 289924 290458 + 243 M 54 162 G 0 3 M 30 90 G 1 0 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289925 290458 243 + . gene_id 5 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289925 290458 . + . KQ414889.1 exonerate:protein2genome:local exon 289925 290458 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 289925 290458 243 + . alignment_id 5 ; Query gi|805765819|ref|XP_003700910.2| ; Align 289925 12 162 ; Align 290090 66 90 ; Align 290180 97 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 220 Query range: 10 -> 195 Target range: 208395 -> 208956 11 : ArgLeuLysValPheGlyProIleLeuAsnCysCysMetGlnPheIleLysTyrThrI : 30 !:!||||||:!!! !.!! !!:!: ! !! ! ||| !|||! ||||||..!| GlnLeuLysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValI 208396 : CAATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGA : 208453 31 : leLeuLeuLeuArgSerLysGlnIleArgAspCysLeuAspValIleArgGlnAspTr : 49 ||:!! !:!!|||..! .!.|||||| ! |||:!!!!: !:!!..! ||||| leMetThrValArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTr 208454 : TCATGACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTG : 208510 50 : pIleGluAlaThr<->GluGluAspArgSerIleLeuHisSerArgGlyMetLeuGly : 67 |! !.!.!.! ! ||||||||||||!.!|||:!! ..!!.!!.!! !!!!.! pArgAsnValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAla 208511 : GAGAAACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCC : 208567 68 : ArgLysLeuIleLeuThrValMetLeuThrLeuTyrGlyGlyGlyLeuCysTyrArgT : 87 ||||||||||||:!!! ! ! ! !:!!||||||||| ::: ||| ArgLysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrI 208568 : AGGAAACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattaca : 208627 88 : hrIleIleProLeuMetLysGlyProIleThrLeuPro<->AsnAsnValThrIleAr : 105 ! !:!:||||||! ::!! ! !:!!..! ! ! ..!|||:!!||| !|| leAlaLeuProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrAr 208628 : TCGCTTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAG : 208684 106 : gProMetAlaCysAlaGlyTyrPheValPheIleAsnGluGlnGlnThrProThrTyr : 124 | !:!!!.!! ! !!! ! ! !!.!!:!::!!! !:! ! !:!|||..! !! gArgLeuValTyrProValProLysPheIleLeuAspValArgTyrSerProValAsn 208685 : AAGGCTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAAT : 208741 125 : GluIleValPheThrLeuGlnPhePheSerGlyIleIleThrTyrAlaThrSerSerG : 144 |||||| !!!:!|||:!!|||!!.!!.||||||.!!:!!.!!:!! !! !!!! !| GluIlePheTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValG 208742 : GAGATTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTG : 208801 145 : lySerTyrGlyIlePheThrValPheValLeuHisValCysSerLeuLeuArgMetLe : 163 ||:!!! !|||:!: !.!!:!!.!!!.!:!!|||!.!|||.!!! !|||!:!!!:|| lyAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLe 208802 : GGGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTT : 208858 164 : uAsnLysLysMetLysSerLeuAspGluGlyAlaAspLeuSerGluArgThrValAsn : 182 |! ... !|||:!!!.!|||! !!!:||| !!!: !..!|||!:!!.!:!!:!! uMetSerTrpMetGluLysLeuValAspGlyArgGluAspGluGluLysAsnLeuAsp 208859 : GATGTCCTGGATGGAGAAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGAT : 208915 183 : HisLysIleAlaAspIleValGluHisGluArgLysIle : 195 !!.!:!:!:|||:!!|||||||||!!..!. !::!:!: GlnArgLeuAlaAsnIleValGluGlnHisValArgVal 208916 : CAGAGGTTGGCTAATATCGTGGAGCAGCATGTTCGAGTG : 208956 vulgar: gi|805765819|ref|XP_003700910.2| 10 195 . KQ414889.1 208395 208956 + 220 M 43 129 G 0 3 M 46 138 G 0 3 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208396 208956 220 + . gene_id 6 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208396 208956 . + . KQ414889.1 exonerate:protein2genome:local exon 208396 208956 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208396 208956 220 + . alignment_id 6 ; Query gi|805765819|ref|XP_003700910.2| ; Align 208396 11 129 ; Align 208528 54 138 ; Align 208669 100 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 213 Query range: 0 -> 195 Target range: 266790 -> 267384 1 : MetPheLeuLysThrLysSerGlyGlnValArgLeuLysValPheGlyProIleLeuA : 20 :!: !!|||:!! !:!!||| !!::..!!:!:!!|||||||||||||||:!: !: LeuValLeuGluAspGluSerIleArgThrLysValLysValPheGlyProLeuSerH 266791 : CTCGTTCTGGAGGACGAGAGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCC : 266848 21 : snCysCysMetGlnPheIleLysTyrThrIleLeuLeuLeuArgSerLysGlnIleAr : 39 !!!! ! !:!: ! |||!!.||||||! !||||||||||||||||||:!!||||| isTrpPheValGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleAr 266849 : ATTGGTTCGTCGGAGGAATTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACG : 266905 40 : gAspCysLeuAspValIleArgGlnAspTrp<->IleGluAlaThrGluGluAspArg : 57 |! !|||:!!!!: !!!:!:! !|||||| |||! !.!!! ! !||||||!:! gGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAspLys 266906 : CGGTTGCGTAGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAG : 266962 58 : SerIleLeuHisSerArgGlyMetLeuGlyArgLysLeuIleLeuThrValMetLeuT : 77 ..!:!::!! !.!!.!!.!! !:!!|||||| ! :!! !:!! ! ! ! ! GlnValMetLeuLysAsnAlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaP 266963 : CAGGTGATGTTGAAGAACGCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGT : 267022 78 : hrLeuTyrGlyGlyGlyLeuCysTyrArgThrIleIleProLeuMetLysGlyProIl : 96 !:!! ! !!|||! !||| !!||| !!..!|||! !!!!!! ! ! ! !!:! heMetGlnCysGlyValLeuGlyTyrCysValIleThrAlaPheThrMetGlnThrVa 267023 : TCATGCAATGCGGTGTTCTCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGT : 267079 97 : eThrLeuProAsnAsnValThrIle<->ArgProMetAlaCysAlaGlyTyrPheVal : 114 : !:!! !|||.!...!! !||| !.!! !:!! !!||||||! !||| ! lGluValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaValTyrLysLys 267080 : GGAAGTCGGTAACGAGACTAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAG : 267136 115 : PheIleAsnGluGlnGlnThrProThrTyrGluIleValPheThrLeuGlnPhePheS : 134 .!.||| ! .!. !:!|||||| !!|||||||||.!!..!! !|||||| ! | MetIleAlaValAspThrSerProThrAsnGluIleValLeuValSerGlnPheValS 267137 : ATGATCGCAGTTGATACCAGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTAT : 267196 135 : erGlyIleIleThrTyrAlaThrSerSerGlySerTyrGlyIlePheThrValPheVa : 153 |||||.!!|||..! !!:!!!:! ! !|||:!!!:!.!!:!! !.!!||||||!. erGlyPheIleValAsnSerSerValValGlyAlaPheSerLeuAlaAlaValPheAl 267197 : CAGGATTCATCGTGAATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGC : 267253 154 : lLeuHisValCysSerLeuLeuArgMetLeuAsnLysLysMetLysSer<->LeuAsp : 171 ! !|||!.!|||.!!! !|||!!!:!!|||! ! ! !!!:|||..! :!!:!! aAlaHisAlaCysGlyGlnLeuSerValLeuMetMetTrpIleLysGluPheValAsn 267254 : GGCTCACGCGTGCGGACAGCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAAC : 267310 172 : GluGlyAlaAspLeuSerGluArgThrValAsnHisLysIleAlaAspIleValGluH : 191 ..!..! !||| !!:!:!!!.!..! ! ! !!||||||!.!! :!!||||||| ArgSerArgAspSerAsnLysAsnValCysPheAspLysIleGlyValValValGluH 267311 : CGATCCAGAGATAGCAATAAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAAC : 267370 192 : isGluArgLysIle : 195 ||.!.! !!:!:!! isHisLeuArgVal 267371 : ATCATCTGAGAGTT : 267384 vulgar: gi|805765819|ref|XP_003700910.2| 0 195 . KQ414889.1 266790 267384 + 213 M 49 147 G 0 3 M 55 165 G 0 3 M 65 195 G 0 3 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266791 267384 213 + . gene_id 7 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266791 267384 . + . KQ414889.1 exonerate:protein2genome:local exon 266791 267384 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266791 267384 213 + . alignment_id 7 ; Query gi|805765819|ref|XP_003700910.2| ; Align 266791 1 147 ; Align 266941 50 165 ; Align 267109 105 195 ; Align 267307 170 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 195 Query range: 0 -> 195 Target range: 274536 -> 275130 1 : MetPheLeuLysThrLysSerGlyGlnValArgLeuLysValPheGlyProIleLeuA : 20 !!:.!.||| ! !:!!||| !!!.:!!!:!||||||:!!.!!||||||:!! !: IleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyH 274537 : ATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTC : 274594 21 : snCysCysMetGlnPheIleLysTyrThrIleLeuLeuLeuArgSerLysGlnIleAr : 39 !!!! ! !!!: ! |||!!.||||||! ||||||||||||||||||:!!||||| isTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleAr 274595 : ACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACG : 274651 40 : gAspCysLeuAspValIleArgGlnAspTrp<->IleGluAlaThrGluGluAspArg : 57 |! !|||:!!!!: !!!:!:! !|||||| |||! !.!!! ! !||||||!:! gGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAspGln 274652 : CGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAA : 274708 58 : SerIleLeuHisSerArgGlyMetLeuGlyArgLysLeuIleLeuThrValMetLeuT : 77 ..!:!::!! !.!!.!!.!! !:!!|||||| ! :!! :!! ! ! ! ! GlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaP 274709 : CAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGT : 274768 78 : hrLeuTyrGlyGlyGlyLeuCysTyrArgThrIleIleProLeuMetLysGlyProIl : 96 !:!! ! !!|||! !||||||||| !!..!|||! ! !!!!!! ! ! ! !!:! heMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGlnThrVa 274769 : TCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGT : 274825 97 : eThrLeuProAsnAsnVal<->ThrIleArgProMetAlaCysAlaGlyTyrPheVal : 114 ! !:!! !|||.!...! |||:!:!.! !:!! !!||| !!.!||| ! lGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLysLys 274826 : TCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAG : 274882 115 : PheIleAsnGluGlnGlnThrProThrTyrGluIleValPheThrLeuGlnPhePheS : 134 .!!:!! ! !.!. !!:!|||||| !!|||||||||.!!.!!! !|||||| ! | IleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnPheValS 274883 : ATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGT : 274942 135 : erGlyIleIleThrTyrAlaThrSerSerGlySerTyrGlyIlePheThrValPheVa : 153 |||||.!!|||..! !!:!!!:!:!! !|||:!!!:!.!!:!! !.!!||||||!. erGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAl 274943 : CGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGC : 274999 154 : lLeuHisValCysSerLeuLeuArgMetLeuAsnLysLysMet<->LysSerLeuAsp : 171 ! !|||!.!! !.!!! !|||!!!:!!|||! ! ! !!!: :!!! !:!!:!! aAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheValAsn 275000 : GGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAAT : 275056 172 : GluGlyAlaAspLeuSerGluArgThrValAsnHisLysIleAlaAspIleValGluH : 191 .!...! !||| ::::::...... !:!!|||!.!! :!!||||||| HisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValValValGluH 275057 : CATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAAC : 275116 192 : isGluArgLysIle : 195 ||.!.! !!:!:!! isHisLeuArgVal 275117 : ATCATCTGAGGGTA : 275130 vulgar: gi|805765819|ref|XP_003700910.2| 0 195 . KQ414889.1 274536 275130 + 195 M 49 147 G 0 3 M 53 159 G 0 3 M 65 195 G 0 3 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274537 275130 195 + . gene_id 8 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274537 275130 . + . KQ414889.1 exonerate:protein2genome:local exon 274537 275130 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274537 275130 195 + . alignment_id 8 ; Query gi|805765819|ref|XP_003700910.2| ; Align 274537 1 147 ; Align 274687 50 159 ; Align 274849 103 195 ; Align 275047 168 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 193 Query range: 232 -> 331 Target range: 305106 -> 305816 233 : GlnLysSerAspProMetPheIleThrIleCysIleIleLeuGlnThrSerPheIleP : 252 :!!!..|||:!! !!:!: !:!!|||! !! !! !:!:|||! !! !||| ! ! !| GluSerSerAsnThrValSerLeuThrThrTyrThrValLeuLeuIleSerValThrP 305107 : GAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGTTACTGATATCTGTAACAT : 305164 253 : heCysSerPheIleLeuCysTyrIleGlyGlnLeuLeuValAspGlu >>>> Targ : 268 || !! !|||||||||||||||||||||:!!:!!|||:!!!!::!! heAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMetGluLys++ 305165 : TTAATATATTCATATTATGCTACATTGGTGAGATTCTTATGGAAAAGgt......... : 305214 269 : et Intron 1 >>>> AsnAsnValValGlyMetThrSerValMetLeuAspTrpT : 281 413 bp !:!!:! !||||||:!::!!!!! !!|||:!!..!|||| ++SerSerSerValGlyLeuSerCysPheMetIleSerTrpT 305215 : ................agAGCAGTAGCGTTGGATTATCCTGTTTTATGATCAGTTGGT : 305664 282 : yrArgLeuProIleLysLysAlaArgCysLeuValLeuIleIleAlaMetSerAsnTy : 300 ||!.!||||||! !|||! ! !!.! !!|||:!!||||||||||||||||||!:! ! yrHisLeuProThrLysThrIleHisGlyLeuIleLeuIleIleAlaMetSerSerAs 305665 : ACCATTTACCGACTAAGACGATACATGGTCTTATTTTAATCATTGCCATGTCAAGTAA : 305721 301 : rProMetGlnLeuThrAlaGlyLysIleValGluIleSerLeuValThrPheThrAsp : 319 !||| :!!:!!!:!|||||||||:!!|||!!::!!|||||| !|||||| !:!! nProAlaLysIleSerAlaGlyLysValValAspLeuSerLeuSerThrPheGlyAsn 305722 : TCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTATCTTTATCCACATTTGGAAAC : 305778 320 : IleMetLysMetSerMetAlaTyrLeuAsnIleLeu : 331 :!:! ! ... ::: ::::::|||::: ValSerTyrTyrGlnTyrSerAsnIleSerIleVal 305779 : GTGAGTTACTATcaatattccaatatttcaattgtt : 305816 vulgar: gi|805765819|ref|XP_003700910.2| 232 331 . KQ414889.1 305106 305816 + 193 M 35 105 5 0 2 I 0 409 3 0 2 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305107 305816 193 + . gene_id 9 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305107 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305107 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305816 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305816 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305107 305816 193 + . alignment_id 9 ; Query gi|805765819|ref|XP_003700910.2| ; Align 305107 233 105 ; Align 305625 268 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 186 Query range: 0 -> 172 Target range: 299845 -> 300405 1 : MetPheLeuLysThrLysSerGlyGlnValArgLeuLysValPheGlyProIleLeuA : 20 !!:|||!!! ! !|||||| !!!.|||!:!:!!|||||||||||||||:!! ! IlePhePheAlaGluLysSerIleHisValLysValLysValPheGlyProValGlyP 299846 : ATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTT : 299903 21 : snCysCysMetGlnPheIleLysTyrThrIleLeuLeuLeuArgSerLysGlnIleAr : 39 !||| ! ....!!:!!|||||| ! !|||! !|||!.!.!! !.!!.. heCysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGl 299904 : TTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGA : 299960 40 : gAspCysLeuAspValIleArgGlnAsp--TrpIleGluAlaThrGluGluAspArgS : 58 ! |||:!!.!. !:!!..!::!|||## .....!..!.!. !!|||! uArgCysIleGlnHisValGluArgAsp##UnkUnkUnkUnkUnkSerAsnHisArgT 299961 : ACGATGCATCCAACACGTCGAGAGAGACNNNNNNNNNNNNNNNNTTCGAATCATCGTA : 300019 59 : erIleLeuHisSerArgGlyMetLeuGlyArgLysLeuIleLeuThrValMetLeuTh : 77 !!|||:!! !!! !! !! :!!.!!|||!!.|||! !..! ! :!! hrIleMetLeuArgTyrValThrMetSerArgAsnLeuThrThrValCysAlaValPh 300020 : CGATCATGTTGAGATACGTGACTATGAGCAGAAATCTGACGACCGTGTGCGCCGTGTT : 300076 78 : rLeuTyrGlyGlyGlyLeuCysTyrArgThr >>>> Target Intron 1 >>>> : 88 !||||||!.!||||||:!!! |||!.!||| 42 bp eLeuTyrAlaGlyGlyMetSerTyrHisThr++ 300077 : TCTTTACGCAGGTGGTATGTCGTATCACACGgt......................... : 300111 89 : IleIleProLeuMetLysGlyProIleThrLeuProAsnAsnValThrIleArgPr : 106 ! ! !! |||..! !! ! ! ! !.!.||| !||| !!:!|| -+SerArgGluLysSerLysAsnTyrThrTyrLysArgGluAsnTyrThrTyrLysPr 300112 : tgTCGAGGGAGAAAAGCAAGAATTACACTTACAAAAGGGAGAATTACACTTACAAACC : 300205 107 : oMetAlaCysAlaGlyTyrPheValPheIleAsnGluGlnGlnThrProThrTyrGlu : 125 |:!:|||! ! !!|||||| ! !||||||:!! !||| !:!|||||||||||| oLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnThrSerProThrTyrGlu 300206 : GTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAACCAGTCCTACCTACGAg : 300262 126 : IleValPheThrLeuGlnPhePheSerGlyIleIleThrTyrAlaThrSerSerGlyS : 145 ||||||||| ...... |||:!!!.!!!:|||! !||| !..!!!!!!!!.!: IleValPhePhePheHisCysPheAlaAlaMetIleMetTyrAsnValThrThrAlaA 300263 : atcgtatttttctttcactgttTCGCAGCGATGATCATGTACAACGTGACAACGGCAG : 300322 146 : erTyrGlyIlePheThrValPheValLeuHisValCysSerLeuLeuArgMetLeuAs : 164 !!|||.!!:!: .!!:!!|||||| !|||:!!|||.!!! !:!!!:!!!:! !! laTyrSerLeuAlaAlaIlePheValThrHisIleCysGlyGlnIleGlnIleGlnMe 300323 : CGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGACAGATTCAGATACAGAT : 300379 165 : nLysLysMetLysSerLeuAspGlu : 172 !!:!:!!:!!..!|||! ||| tAlaArgLeuGluAspLeuValGlu 300380 : GGCGAGATTGGAGGATCTGGTGGAG : 300405 vulgar: gi|805765819|ref|XP_003700910.2| 0 172 . KQ414889.1 299845 300405 + 186 M 48 144 F 0 2 M 39 117 5 0 2 I 0 38 3 0 2 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299846 300405 186 + . gene_id 10 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 299846 300108 . + . KQ414889.1 exonerate:protein2genome:local exon 299846 300108 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local splice5 300109 300110 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300109 300150 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300149 300150 . + . intron_id 0 ; splice_site "TG" KQ414889.1 exonerate:protein2genome:local cds 300151 300405 . + . KQ414889.1 exonerate:protein2genome:local exon 300151 300405 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299846 300405 186 + . alignment_id 10 ; Query gi|805765819|ref|XP_003700910.2| ; Align 299846 1 144 ; Align 299992 49 117 ; Align 300151 88 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 4 -> 132 Target range: 294855 -> 295242 5 : ThrLysSerGlyGlnValArgLeuLysValPheGlyProIleLeuAsnCysCysMetG : 24 ...|||::: ::::::::!:!!|||:!!.!.||||||:!!||| !!! ! :!:. ValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetLeuS 294856 : GTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGCTCT : 294913 25 : lnPheIleLysTyrThrIleLeuLeuLeuArgSerLysGlnIleArgAspCysLeuAs : 43 ...!.:!!!:!|||!:! !|||:!!|||!:!!!! !.!!!:! !!|||:!!!! erMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCysIleGl 294914 : CTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCATCGA : 294970 44 : pValIleArgGlnAspTrp<->IleGluAlaThrGluGluAspArgSerIleLeuHis : 61 :! !|||..!.!.|||||| :!: ! !!.! !||| !!|||:!!|||:!! ! uAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIleMetIle 294971 : AGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATGATC : 295027 62 : SerArgGlyMetLeuGlyArgLysLeuIleLeuThrValMetLeuThrLeuTyrGlyG : 81 !.!!.!!.!|||:!! !!:!!:!:!!! !:!!.!! !!! :!!! !:!!|||.!!. LysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleIleTyrSerS 295028 : AAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACAGTT : 295087 82 : lyGlyLeuCysTyrArgThrIleIleProLeuMetLysGlyProIleThrLeuProAs : 100 .!!.!:!!! |||!.!.!!|||:::|||............ :!: ! ! !!! erAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGluAsnLysLy 295088 : CTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGAGAACAAGAA : 295144 101 : nAsnValThrIleArgProMetAlaCysAlaGlyTyrPheValPheIleAsnGluGln : 119 .||| !||||||||| !!:!: !! ! !!|||||| :!!|||:!!:!!! ! sAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheValAspAlaTyr 295145 : GAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCTTAT : 295201 120 : GlnThrProThrTyrGluIleValPheThrLeuGlnPhe : 132 ...!:!|||||||||||||||:!! |||! !! ||| SerSerProThrTyrGluIleIleArgThrHisLeuPhe 295202 : TCCAGTCCTACCTACGAGATCATAAGAACTCATCTCTTT : 295242 vulgar: gi|805765819|ref|XP_003700910.2| 4 132 . KQ414889.1 294855 295242 + 180 M 45 135 G 0 3 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294856 295242 180 + . gene_id 11 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294856 295242 . + . KQ414889.1 exonerate:protein2genome:local exon 294856 295242 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294856 295242 180 + . alignment_id 11 ; Query gi|805765819|ref|XP_003700910.2| ; Align 294856 5 135 ; Align 294994 50 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 179 Query range: 230 -> 320 Target range: 301686 -> 302036 231 : GluProGlnLysSerAspProMetPheIleThrIleCysIleIleLeuGlnThrSerP : 250 ||| !|||!!.|||||| !!!!: !!!: !! !! !.!!! !||| !||||||| GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerP 301687 : GAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGT : 301744 251 : heIlePheCysSerPheIleLeuCysTyrIleGlyGlnLeuLeuValAspGlu >>> : 268 ||! !||| !! !||||||!!!||||||||||||:!!:!!||| !!!::!! heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301745 : TCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt... : 301800 269 : > Target Intron 1 >>>> AsnAsnValValGlyMetThrSerValMetLeuA : 279 80 bp !!:! !:!!||| .!!||| ! !:!!| ++CysSerGlnIleGlySerAlaSerTyrGluIleA 301801 : ......................agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCG : 301911 280 : spTrpTyrArgLeuProIleLysLysAlaArgCysLeuValLeuIleIleAlaMetSe : 298 ||||||||!.!|||||| |||!:!||| ! !|||:!!|||:!!! !!.!!!:|| spTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSe 301912 : ATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATC : 301968 299 : rAsnTyrProMetGlnLeuThrAlaGlyLysIleValGluIleSerLeuValThrPhe : 317 |.!.|||||| !:!!||||||||||||||||||:!!!!::!!|||||| !|||||| rGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPhe 301969 : GCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTC : 302025 318 : ThrAspIle : 320 !:!..!:!! SerSerVal 302026 : AGCTCTGTA : 302036 vulgar: gi|805765819|ref|XP_003700910.2| 230 320 . KQ414889.1 301686 302036 + 179 M 37 111 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301687 302036 179 + . gene_id 12 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301687 302036 179 + . alignment_id 12 ; Query gi|805765819|ref|XP_003700910.2| ; Align 301687 231 111 ; Align 301878 268 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 245 -> 329 Target range: 228292 -> 230433 246 : LeuGlnThrSerPheIlePheCysSerPheIleLeuCysTyrIleGlyGlnLeuLeuV : 265 |||! !||||||! ||| ||||||...||||||||||||:!!:!!:!!! LeuLeuLeuSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValA 228293 : TTACTTTTATCCTTTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTG : 228350 266 : alAspGlu >>>> Target Intron 1 >>>> AsnAsnValValGlyMetThr : 274 .!!!:.!. 1889 bp !!.. !|||||| ! ! laGluHis++ ++CysArgLysValGlyGluLys 228351 : CCGAACACgt.........................agTGCAGAAAAGTCGGCGAAAAG : 230266 275 : SerValMetLeuAspTrpTyrArgLeuProIleLysLysAlaArgCysLeuValLeuI : 294 ||| !|||:!!!!:|||||||||||| !! !!!.||| !! !|||! !:!!|||| SerTyrMetIleGluTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuI 230267 : TCGTACATGATCGAATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGA : 230326 295 : leIleAlaMetSerAsnTyrProMetGlnLeuThrAlaGlyLysIleValGluIleSe : 313 |||||||||||||||||! ! !!! !:!!!!!|||||||||!!.!!:||||||:!!|| leIleAlaMetSerAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSe 230327 : TCATCGCCATGTCCAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATC : 230383 314 : rLeuValThrPheThrAspIleMetLysMetSerMetAlaTyrLeuAsn : 329 |:!! !||||||!:!|||:!!! ! !!:! ! !.!||| !||| rValAsnThrPheSerAspValSerIleIlePheSerValTyrThrAsn 230384 : CGTAAACACTTTCAGCGACGTAAGTATCATATTCTCTGTTTACACGAAT : 230433 vulgar: gi|805765819|ref|XP_003700910.2| 245 329 . KQ414889.1 228292 230433 + 178 M 22 66 5 0 2 I 0 1885 3 0 2 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228293 230433 178 + . gene_id 13 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 228293 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228293 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228293 230433 178 + . alignment_id 13 ; Query gi|805765819|ref|XP_003700910.2| ; Align 228293 246 66 ; Align 230248 268 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 243 -> 334 Target range: 258303 -> 258735 244 : IleIleLeuGlnThrSerPheIlePheCysSerPheIleLeuCysTyrIleGlyGlnL : 263 .!!!!::!!! ! !|||... ||| |||::::::||||||||||||:!!: PheMetIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluI 258304 : TTTATGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAA : 258361 264 : euLeuValAspGlu >>>> Target Intron 1 >>>> AsnAsnValValGly : 272 !!|||..!!!::!! 90 bp !!!. !|||||| leLeuThrGluGln++ ++CysLysLysValGly 258362 : TATTAACAGAACAGgt.........................agTGCAAGAAAGTTGGC : 258478 273 : MetThrSerValMetLeuAspTrpTyrArgLeuProIleLysLysAlaArgCysLeuV : 292 ..! ! !||| !||||||||| !|||||| !|||!:! !! ! !|||: AspValValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuI 258479 : GACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAA : 258538 293 : alLeuIleIleAlaMetSerAsnTyrProMetGlnLeuThrAlaGlyLysIleValGl : 311 !!|||:!!|||||| |||!:! !:!:|||:!!||||||||||||... .. leLeuValIleAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePheHi 258539 : TTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttca : 258595 312 : uIleSerLeuValThrPheThrAsp >>>> Target Intron 2 >>>> IleM : 321 .:::|||:!! !||||||!:!||| 69 bp :!!! sMetSerIleTyrThrPheSerAsp++ ++ValI 258596 : catGTCCATTTACACATTCAGCGATgt.........................agGTAA : 258694 322 : etLysMetSerMetAlaTyrLeuAsnIleLeuArgGluVal : 334 !:|||! |||.!.||||||||||||:!!||||||:!!||| leLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnVal 258695 : TAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGTA : 258735 vulgar: gi|805765819|ref|XP_003700910.2| 243 334 . KQ414889.1 258303 258735 + 175 M 24 72 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258304 258735 175 + . gene_id 14 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 258304 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258304 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258735 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258735 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258304 258735 175 + . alignment_id 14 ; Query gi|805765819|ref|XP_003700910.2| ; Align 258304 244 72 ; Align 258466 268 156 ; Align 258691 320 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 251 -> 320 Target range: 200176 -> 200452 252 : PheCysSerPheIleLeuCysTyrIleGlyGlnLeuLeuValAspGlu >>>> Tar : 268 ||||||! !||||||||||||! !|||||||||||||||:!!|||||| PheCysIlePheIleLeuCysCysIleGlyGlnLeuLeuIleAspGlu++ 200177 : TTCTGCATTTTCATACTATGTTGCATCGGTCAACTTCTTATCGATGAAgt........ : 200227 269 : get Intron 1 >>>> AsnAsnValValGlyMetThrSerValMetLeuAspTrp : 280 68 bp ||| !!|||||||||:!:|||||| !! !:!!:!!||| ++AsnTyrValValGlyLeuThrSerCysThrValAsnTrp 200228 : .................agAATTACGTGGTTGGATTAACATCTTGCACGGTGAATTGG : 200329 281 : TyrArgLeuProIleLysLysAlaArgCysLeuVal-LeuIleIleAlaMetSerAsn : 299 ! !|||! !|||! !!:! ! !.!|||! !|||..!#||||||||||||||||||||| CysArgProProAsnArgHisValArgTyrLeuThr#LeuIleIleAlaMetSerAsn 200330 : TGTCGTCCTCCAAACAGACATGTGCGCTATCTGACCGCTGATAATTGCCATGTCTAAT : 200387 300 : TyrProMetGlnLeuThrAlaGlyLysIleValGluIleSerLeuValThrPheThrA : 319 |||! !!!:::!|||.!!::!.!!|||:!:|||||||||!:!|||!.!|||||||||| TyrLeuIleArgLeuAlaSerSerLysValValGluIleAsnLeuAlaThrPheThrA 200388 : TACCTAATAAGATTAGCAAGTAGTAAAGTGGTCGAAATAAATTTAGCTACTTTCACAG : 200447 320 : spIle : 320 ||:!! spVal 200448 : ATGTA : 200452 vulgar: gi|805765819|ref|XP_003700910.2| 251 320 . KQ414889.1 200176 200452 + 174 M 16 48 5 0 2 I 0 64 3 0 2 M 25 75 F 0 1 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 200177 200452 174 + . gene_id 15 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 200177 200224 . + . KQ414889.1 exonerate:protein2genome:local exon 200177 200224 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 200225 200226 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 200225 200292 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 200291 200292 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 200293 200452 . + . KQ414889.1 exonerate:protein2genome:local exon 200293 200452 . + . insertions 0 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local similarity 200177 200452 174 + . alignment_id 15 ; Query gi|805765819|ref|XP_003700910.2| ; Align 200177 252 48 ; Align 200293 268 75 ; Align 200369 293 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 0 -> 195 Target range: 256805 -> 257399 1 : MetPheLeuLysThrLysSerGlyGlnValArgLeuLysValPheGlyProIleLeuA : 20 :!:|||||| ! ! ! ||| ! ! :::::::::||| |||||||||!!: !: ValPheLeuAspAspAspSerPheTyrMetLysValLysAsnPheGlyProMetSerH 256806 : GTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCC : 256863 21 : snCysCysMetGlnPheIleLysTyrThrIleLeuLeuLeuArgSerLysGlnIleAr : 39 !!!! !!!:...! ! !!!.||||||:!:|||||||||!:!.!!|||.!.||||| isTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleAr 256864 : ATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACG : 256920 40 : gAspCysLeuAspValIleArgGlnAspTrp<->IleGluAlaThrGluGluAspArg : 57 | !!|||:!!!!: !|||..! !|||||| !!:! ! !! !|||:!!|||!:! gTyrCysValGluHisIleGluThrAspTrpArgMetValArgArgGluLysAspGln 256921 : CTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAA : 256977 58 : SerIleLeuHisSerArgGlyMetLeuGlyArgLysLeuIleLeuThrValMetLeuT : 77 ..!:!::!! !.!!.!!.!! !!!|||||| ! :!! ! ! ! ! !! GlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaI 256978 : CAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTA : 257037 78 : hrLeuTyrGlyGlyGlyLeuCysTyrArgThrIleIleProLeuMetLysGlyProIl : 96 !:!! ! .!!||| ...|||::: ..! !!|||! ! !! ! !|| leMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAsnThrGluIleIl 257038 : TCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAAT : 257094 97 : eThrLeuProAsnAsnValThrIle<->ArgProMetAlaCysAlaGlyTyrPheVal : 114 | !:!! !|||.!...!|||||| ||| !:!: !! !.!!! !||| ! eHisValGlyAsnGluThrThrIleValArgValLeuProValThrValTyrLysLys 257095 : TCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAG : 257151 115 : PheIleAsnGluGlnGlnThrProThrTyrGluIleValPheThrLeuGlnPhePheS : 134 .!.:!:|||! .!.|||!:!|||||| !!||||||||| !! !:!!||| !!::| LeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheMetGlnThrTrpS 257152 : CTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGT : 257211 135 : erGlyIleIleThrTyrAlaThrSerSerGlySerTyrGlyIlePheThrValPheVa : 153 ||..!||||||.!! !.!!!:!!!! !.!!! !!:!.!!:!! .!!||||||!. erSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAlaAlaValPheAl 257212 : CGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGC : 257268 154 : lLeuHisValCysSerLeuLeuArgMetLeuAsnLysLysMetLysSerLeuAspGlu : 172 ! !|||!.!! !.!!! !|||! !:!!|||! ..! !!!:! !..!!!!! .!. aThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGluPheValAsn 257269 : CACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAAT : 257325 173 : GlyAlaAspLeuSerGluArgThrValAsnHisLys<->IleAlaAspIleValGluH : 191 ! !:!! ! ! |||:::||| !||| |||!.!! |||||||||| GluSerArgAsnArgGluLysThrPheProPheLysGlnIleGlyValIleValGluH 257326 : GAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGC : 257385 192 : isGluArgLysIle : 195 ||.!. !!:!:!: isHisLeuArgVal 257386 : ATCATTTAAGAGTG : 257399 vulgar: gi|805765819|ref|XP_003700910.2| 0 195 . KQ414889.1 256805 257399 + 170 M 49 147 G 0 3 M 55 165 G 0 3 M 80 240 G 0 3 M 11 33 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256806 257399 170 + . gene_id 16 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256806 257399 . + . KQ414889.1 exonerate:protein2genome:local exon 256806 257399 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256806 257399 170 + . alignment_id 16 ; Query gi|805765819|ref|XP_003700910.2| ; Align 256806 1 147 ; Align 256956 50 165 ; Align 257124 105 240 ; Align 257367 185 33 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 168 Query range: 243 -> 320 Target range: 214668 -> 215022 244 : IleIleLeuGlnThrSerPheIlePheCysSerPheIleLeuCysTyrIleGlyGlnL : 263 :!::!:||| ! ! !|||... ||| ||||||...||||||||||||:!!| ValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluL 214669 : GTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGGCGAGC : 214726 264 : euLeuValAspGlu >>>> Target Intron 1 >>>> AsnAsnValValGly : 272 ||:!! !!!::!! 123 bp !!!. !|||||| euValSerGluGln++ ++CysLysLysValGly 214727 : TTGTGTCTGAACAGgt.........................agTGCAAAAAGGTCGGA : 214876 273 : MetThrSerValMetLeuAspTrpTyrArgLeuProIleLysLysAlaArgCysLeuV : 292 ..!||| !|||:!!!!:||||||||||||||| !!!.||| !! !|||! !: GluValSerTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCysCysI 214877 : GAAGTATCGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTGTTGCA : 214936 293 : alLeuIleIleAlaMetSerAsnTyrProMetGlnLeuThrAlaGlyLysIleValGl : 311 !!||||||!!:||||||||||||! !!:!::!!!!!|||||||||!!.!!:||||| leLeuIleMetAlaMetSerAsnSerSerValLysPheThrAlaGlyAsnMetValGl 214937 : TTTTGATCATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATGGTAGA : 214993 312 : uIleSerLeuValThrPheThrAspIle : 320 |:!:|||:!! !||||||!:!..!:!! uLeuSerIleSerThrPheSerSerVal 214994 : ACTGTCTATCAGCACTTTCAGCAGTGTA : 215022 vulgar: gi|805765819|ref|XP_003700910.2| 243 320 . KQ414889.1 214668 215022 + 168 M 24 72 5 0 2 I 0 119 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214669 215022 168 + . gene_id 17 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214669 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214669 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214669 215022 168 + . alignment_id 17 ; Query gi|805765819|ref|XP_003700910.2| ; Align 214669 244 72 ; Align 214864 268 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 235 -> 333 Target range: 272851 -> 273296 236 : AspProMetPheIleThrIleCysIleIleLeuGlnThrSerPheIlePheCysSerP : 255 ||| !..! !:!!|||! ! !.!!!!::!!! ! !|||.!. ||| | AspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerMetThrPheAsnIleP 272852 : GATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCATgacttttaacattt : 272909 256 : heIleLeuCysTyrIleGlyGlnLeuLeuValAspGlu >>>> Target Intron : 268 |||||::!||||||||||||:!!:!!|||..!!!:..! 70 bp heIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272910 : ttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt.................. : 272950 269 : 1 >>>> AsnAsnValValGlyMetThrSerValMetLeuAspTrpTyrArgLeuP : 284 ... :::||| !..! ! !||| !:!!|||||| !|||| ++CysLysLysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuP 272951 : .......agtgtaaaaaaattggcGAGGTAGTTTACATGACGAACTGGTACTATTTAC : 273066 285 : roIleLysLysAlaArgCysLeuValLeuIleIleAlaMetSerAsnTyrProMetGl : 303 || !||| ! !! ! !|||:!!|||||||||:!!! !!!!:! ! !!!::! roGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCysSerValValIleLy 273067 : CCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATGCAGTGTTGTGATTAA : 273123 304 : nLeuThrAlaGlyLysIleValGluIleSerLeuValThrPheThrAsp >>>> Ta : 320 !:!!|||||||||!:!|||||| !!:|||:!! !|||||| !||| sIleThrAlaGlyArgIleValProMetSerValTyrThrPheGlyAsp++ 273124 : AATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTCGGCGATgt....... : 273176 321 : rget Intron 2 >>>> IleMetLysMetSerMetAlaTyrLeuAsnIleLeuAr : 332 81 bp :::||||||! :!!.!.||||||||||||!!:||||| ++ValMetLysSerAlaPheAlaTyrLeuAsnMetLeuAr 273177 : ..................aggtGATGAAAAGTGCGTTCGCGTACTTAAATATGCTACG : 273291 333 : gGlu : 333 |:!! gGln 273292 : ACAA : 273296 vulgar: gi|805765819|ref|XP_003700910.2| 235 333 . KQ414889.1 272851 273296 + 149 M 32 96 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272852 273296 149 + . gene_id 18 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272852 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272852 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273296 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273296 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272852 273296 149 + . alignment_id 18 ; Query gi|805765819|ref|XP_003700910.2| ; Align 272852 236 96 ; Align 273018 268 156 ; Align 273255 320 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 226 -> 320 Target range: 234791 -> 235147 227 : ArgIleIleThrGluProGlnLysSerAspProMetPheIleThrIleCysIleIleL : 246 !:! !||| ! !!|||:!!!..... :::.!! !! !:!!|||: LysCysIleLeuThrSerGlnGluLysSerLysGluLysLeuAlaSerTyrValIleV 234792 : AAATGTATTTTAACTTCTCAGGAAAAgtcgaaggaaaaattagCTTCATACGTCATCG : 234849 247 : euGlnThrSerPheIlePheCysSerPheIleLeuCysTyrIleGlyGlnLeuLeuVa : 265 !! ! ..!|||.!.! !||| ||||||...||||||||||||:!! !|||.. alTyrValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuTh 234850 : TGTACGTGTCCATGACATTtaatatattcatattttgttACATCGGAGAGACGCTTAC : 234906 266 : lAspGlu >>>> Target Intron 1 >>>> AsnAsnValValGlyMetThrS : 275 !!!::!! 74 bp !!.! !|||||| ! ! rGluGln++ ++CysThrLysValGlyGluLysV 234907 : AGAGCAGgt.........................agTGTACCAAAGTCGGAGAAAAAG : 235010 276 : erValMetLeuAspTrpTyrArgLeuProIleLysLysAlaArgCysLeuValLeuIl : 294 ! !||| !!!:||||||||||||||| !|||! |||! ! !!||||||:!!|| alTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIl 235011 : TGTACATGACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGAT : 235067 295 : eIleAlaMetSerAsnTyrProMetGlnLeuThrAlaGlyLysIleValGluIleSer : 313 ||||:!!! !|||!:! !!!::!!:!!||||||||||||.!!:!!:!!!!:||| eIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheLeuGlnMetSer 235068 : CATCTCCAGGTCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCT : 235124 314 : LeuValThrPheThrAspIle : 320 :!!!.!|||||| !|||:!: ValAlaThrPheGlyAspVal 235125 : GTCGCAACATTTGGCGATGTG : 235147 vulgar: gi|805765819|ref|XP_003700910.2| 226 320 . KQ414889.1 234791 235147 + 147 M 41 123 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234792 235147 147 + . gene_id 19 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234792 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234792 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234792 235147 147 + . alignment_id 19 ; Query gi|805765819|ref|XP_003700910.2| ; Align 234792 227 123 ; Align 234989 268 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 196 -> 296 Target range: 260779 -> 262012 197 : GlyPhePheGluAsnValGluAlaIleThrGlnTyrIleCysPheValAspIleMetG : 216 .!!|||.!...!..!:!!|||! !:!:! !.!. |||||||||:!!!!::!:.!. SerPheIleSerArgIleGluAspValMetAsnArgIleCysPheLeuGluLeuPheA 260780 : AGCTTCATATCGCGTATCGAGGATGTGATGAACCGGATATGCTTCCTGGAGTTGTTCA : 260837 217 : lyAsnThrCysLeuIleCysLeuMetGlyTyrArgIleIleThr >>>> Target : 231 !! !||| !|||||||||:!:|||||| !|||:!!! ! 85 rgCysThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeuMet++ 260838 : GGTGCACTCTGGATATATGTCTACTTGGCTACTATATTCTTATGgt............ : 260884 232 : Intron 1 >>>> GluProGlnLysSerAspProMetPheIleThrIleCysIleI : 245 2 bp ||| ! :!!..!||| !... !:!::!!! ! !.!!! ++GluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheM 260885 : .............agGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCA : 261776 246 : leLeuGlnThrSerPheIlePheCysSerPheIleLeuCysTyrIleGlyGlnLeuLe : 264 !::!!! !! !:!!.!! !||| ! !||||||:!!||||||||||||:!!:!!|| etMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLe 261777 : TGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACT : 261833 265 : uValAspGlu >>>> Target Intron 2 >>>> AsnAsnValValGlyMetT : 274 |..!!!::!! 81 bp !::: !|||||| . uThrGluGln++ ++CysSerLysValGlyAspV 261834 : AACGGAACAGgt.........................agTGCTCGAAAGTTGGTGACG : 261944 275 : hrSerValMetLeuAspTrpTyrArgLeuProIleLysLysAlaArgCysLeuValLe : 293 .! ! !||| !:!!|||||| !|||||| !|||!.. !! ! !|||:!!|| alValTyrMetThrAsnTrpTyrTyrLeuProAspLysSerIleLeuAspLeuIleLe 261945 : TTGTTTACATGACAAACTGGTATTATTTACCTGATAAAAGTATCCTTGATTTGATTTT : 262001 294 : uIleIleAla : 296 |||||||||| uIleIleAla 262002 : GATCATTGCA : 262012 vulgar: gi|805765819|ref|XP_003700910.2| 196 296 . KQ414889.1 260779 262012 + 147 M 34 102 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 260780 262012 147 + . gene_id 20 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 260780 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260780 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262012 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262012 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 260780 262012 147 + . alignment_id 20 ; Query gi|805765819|ref|XP_003700910.2| ; Align 260780 197 102 ; Align 261734 231 111 ; Align 261926 268 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 258 -> 320 Target range: 224472 -> 224658 259 : TyrIleGlyGlnLeuLeuValAspGluAsnAsnValValGlyMetThrSerValMetL : 278 |||.!! !..!|||!!! !! ::: ... :::|||.....!||| !|||: TyrPheLeuSerLeuPhePheProGlnCysGluLysIleGlyGlnValSerTyrMetI 224473 : TATTTTTTATCGCTATTTTTTCCtcagtgtgaaaaaattggacaAGTGTCGTACATGA : 224530 279 : euAspTrpTyrArgLeuProIleLysLysAlaArgCysLeuValLeuIleIleAlaMe : 297 !!||||||||||||||| !! !!!.||| !! !|||! !:!!|||||||||||||| leAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMe 224531 : TCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGAT : 224587 298 : tSerAsnTyrProMetGlnLeuThrAlaGlyLysIleValGluIleSerLeuValThr : 316 |||||||! ! !!!!::!!||||||||||||!!.!!:||||||:!:!!!|||..!||| tSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThr 224588 : GTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACT : 224644 317 : PheThrAspIle : 320 ||| !|||:!! PheGlyAspVal 224645 : TTCGGTGACGTA : 224658 vulgar: gi|805765819|ref|XP_003700910.2| 258 320 . KQ414889.1 224472 224658 + 144 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224473 224658 144 + . gene_id 21 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224473 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224473 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224473 224658 144 + . alignment_id 21 ; Query gi|805765819|ref|XP_003700910.2| ; Align 224473 259 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 270 -> 331 Target range: 254283 -> 254555 271 : ValGlyMetThrSerValMetLeuAspTrpTyrArgLeuProIleLysLysAlaArgC : 290 |||||| ..! ! !||| !||||||||| !|||||| !:!!:! !! ! ValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuA 254284 : GTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCG : 254341 291 : ysLeuValLeuIleIleAlaMetSerAsnTyrProMetGlnLeuThrAlaGlyLysIl : 309 !|||:!!|||||||||.!! |||||| !:!::!!:!!|||||||||||||| spLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLysIl 254342 : ATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaaaat : 254398 310 : eValGluIleSerLeuValThrPheThrAsp >>>> Target Intron 1 >>>> : 320 | ...:::|||||| !|||||| !||| 89 bp ePheHisMetSerLeuTyrThrPheGlyAsp++ 254399 : attccatatgTCGCTTTACACGTTCGGCGATgt......................... : 254433 321 : IleMetLysMetSerMetAlaTyrLeuAsnIleLeu : 331 :!!:!:|||! .!!.!.||||||||||||!!:||| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeu 254434 : agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTT : 254555 vulgar: gi|805765819|ref|XP_003700910.2| 270 331 . KQ414889.1 254283 254555 + 143 M 49 147 5 0 2 I 0 85 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254284 254555 143 + . gene_id 22 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254284 254430 . + . KQ414889.1 exonerate:protein2genome:local exon 254284 254430 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254431 254432 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254431 254519 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254518 254519 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254520 254555 . + . KQ414889.1 exonerate:protein2genome:local exon 254520 254555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254284 254555 143 + . alignment_id 22 ; Query gi|805765819|ref|XP_003700910.2| ; Align 254284 271 147 ; Align 254520 320 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 270 -> 335 Target range: 264735 -> 265010 271 : ValGlyMetThrSerValMetLeuAspTrpTyrArgLeuProIleLysLysAlaArgC : 290 |||||| !..! ! !|||! !:!!|||||| !|||||| !||| ! !! ! ValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrLysAspIleLeuA 264736 : GTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACAAAGATATCCTTG : 264793 291 : ysLeuValLeuIleIleAlaMetSerAsnTyrProMetGlnLeuThrAlaGlyLysIl : 309 !|||:!!||||||||| !! |||!:! !.!.:!!!!!|||||||||||||| spLeuIleLeuIleIleLeuArgSerSerValValPheLysPheThrAlaGlyLysIl 264794 : ATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCACCGCTGGAAAGAT : 264850 310 : eValGluIleSerLeuValThrPheThrAsp >>>> Target Intron 1 >>>> : 320 |:!!.!.!!:|||:!! !||||||!:!||| 80 bp eLeuHisMetSerMetTyrThrPheSerAsp++ 264851 : ACTTCACATGTCCATGTACACATTCAGTGACgt......................... : 264885 321 : IleMetLysMetSerMetAlaTyrLeuAsnIleLeuArgGluValVal : 335 :!!!!:||| |||.!..!!|||||||||:!!||||||:!!..!:!! ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArgGlnThrMet 264886 : aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGCCAAACGATG : 265010 vulgar: gi|805765819|ref|XP_003700910.2| 270 335 . KQ414889.1 264735 265010 + 132 M 49 147 5 0 2 I 0 76 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264736 265010 132 + . gene_id 23 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264736 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264736 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265010 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265010 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264736 265010 132 + . alignment_id 23 ; Query gi|805765819|ref|XP_003700910.2| ; Align 264736 271 147 ; Align 264963 320 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 230 -> 325 Target range: 244441 -> 244832 231 : GluProGlnLysSerAspProMetPheIleThrIleCysIleIleLeuGlnThrSerP : 250 ||| ! !:!!|||||| !!! .!!:!!! !! ! !.!!||| !! ..!:!!. GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheIleAlaLeuValAlaI 244442 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTATAGCACTCGTTGCTA : 244499 251 : heIlePheCysSerPheIleLeuCysTyrIleGlyGlnLeuLeuValAspGlu >>> : 268 !!:!!! ! !!!!||||||||||||||||||.!!.!. !|||..!!!::!! leValSerAsnThrPheIleLeuCysTyrIleSerAspArgLeuThrGluGln++ 244500 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGACAGGCTGACAGAACAGgt... : 244555 269 : > Target Intron 1 >>>> AsnAsnValValGlyMetThrSerValMetLeuA : 279 106 bp ! !|||||| ..! ! !||| !| ++CysLeuLysValGlyGluValValTyrMetThrA 244556 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 244692 280 : spTrpTyrArgLeuProIleLysLysAlaArgCysLeuValLeuIleIleAlaMetSe : 298 |||||||| !|||||| !:!!:! !! ! !|||:!!||||||||| ! || spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSe 244693 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATC : 244749 299 : rAsnTyrProMetGlnLeuThrAlaGlyLysIleValGluIleSerLeuValThrPhe : 317 |||| !:!::!!:!!||||||||||||:!!:!!.!.!!:|||||| !|||||| rAsnMetValValGluIleThrAlaGlyLysValLeuHisMetSerLeuTyrThrPhe 244750 : GAACATGGTCGTTGAAATCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTC : 244806 318 : ThrAspIleMetLysMetSerMet : 325 !|||:!!! :!!! !.!:!: GlyAspValSerGluThrLysLeu 244807 : GGCGATGTAAGTGAAACTAAACTT : 244832 vulgar: gi|805765819|ref|XP_003700910.2| 230 325 . KQ414889.1 244441 244832 + 130 M 37 111 5 0 2 I 0 102 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244442 244832 130 + . gene_id 24 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244442 244552 . + . KQ414889.1 exonerate:protein2genome:local exon 244442 244552 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244553 244554 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244553 244658 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244657 244658 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244659 244832 . + . KQ414889.1 exonerate:protein2genome:local exon 244659 244832 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244442 244832 130 + . alignment_id 24 ; Query gi|805765819|ref|XP_003700910.2| ; Align 244442 231 111 ; Align 244659 268 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 230 -> 326 Target range: 238411 -> 238805 231 : GluProGlnLysSerAspProMetPheIleThrIleCysIleIleLeuGlnThrSerP : 250 ||| ! !:!!|||||| !!! .!!:!!! !! ! !.!!:!! !! ..!:!!. GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheValAlaLeuValAlaI 238412 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTGTAGCACTCGTTGCTA : 238469 251 : heIlePheCysSerPheIleLeuCysTyrIleGlyGlnLeuLeuValAspGluAsnAs : 269 !!:!!! ! !!!!||||||||||||||||||.!!:!! !|||..!!!::!! .! leValSerAsnThrPheIleLeuCysTyrIleSerGluArgLeuThrGluGlnValGl 238470 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGAAAGGCTGACAGAACAGGTACA : 238526 270 : n >>>> Target Intron 1 >>>> ValValGlyMetThrSerValMetLeuA : 279 . 106 bp !|||||| ..! ! !||| !| n+- -+LysValGlyGluValValTyrMetThrA 238527 : Aga.........................tgAAAGTTGGTGAAGTGGTTTACATGACAG : 238662 280 : spTrpTyrArgLeuProIleLysLysAlaArgCysLeuValLeuIleIleAlaMetSe : 298 |||||||| !|||||| !:!!:! !! ! !|||:!!||||||||| ! || spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSe 238663 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATC : 238719 299 : rAsnTyrProMetGlnLeuThrAlaGlyLysIleValGluIleSerLeuValThrPhe : 317 |||| !:!::!!:!!||||||||||||:!!:!!.!.!!:|||||| !|||||| rAsnValValValLysValThrAlaGlyLysValLeuHisMetSerLeuTyrThrPhe 238720 : GAACGTGGTCGTTAAAGTCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTC : 238776 318 : ThrAspIleMetLysMetSerMetAla : 326 !|||:!!! :!!! !:!:!:||| GlyAspValSerGluThrAsnLeuAla 238777 : GGCGATGTAAGTGAAACTAATCTTGCT : 238805 vulgar: gi|805765819|ref|XP_003700910.2| 230 326 . KQ414889.1 238411 238805 + 120 M 39 117 5 0 2 I 0 102 3 0 2 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238412 238805 120 + . gene_id 25 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 238412 238528 . + . KQ414889.1 exonerate:protein2genome:local exon 238412 238528 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238529 238530 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 238529 238634 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 238633 238634 . + . intron_id 0 ; splice_site "TG" KQ414889.1 exonerate:protein2genome:local cds 238635 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238635 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238412 238805 120 + . alignment_id 25 ; Query gi|805765819|ref|XP_003700910.2| ; Align 238412 231 117 ; Align 238635 270 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 266 -> 329 Target range: 292389 -> 292578 267 : GluAsnAsnValValGlyMetThrSerValMetLeuAspTrpTyrArgLeuProIleL : 286 :!!..!!:!! !:!!!.! .!!||| ! !!!:||||||!.!||||||! !: GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 287 : ysLysAlaArgCysLeuValLeuIleIleAlaMetSerAsnTyrProMetGlnLeuTh : 305 :!||||||||| !:!!||||||:!::!!|||!!:!!!!!.:!!|||!!::!!||||| rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 306 : rAlaGlyLysIleValGluIleSerLeuValThrPheThrAspIleMetLysMetSer : 324 ||||||||||||| !!! :!!|||||| !|||||| !! !:!! :!! !.! rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSerLys 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCAAAA : 292561 325 : MetAlaTyrLeuAsn : 329 :!:!.!! :!!:!! LeuValLeuIleHis 292562 : CTAGTCTTGATACAC : 292578 vulgar: gi|805765819|ref|XP_003700910.2| 266 329 . KQ414889.1 292389 292578 + 119 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 292578 119 + . gene_id 26 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292390 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 292578 119 + . alignment_id 26 ; Query gi|805765819|ref|XP_003700910.2| ; Align 292390 267 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 270 -> 320 Target range: 211782 -> 211932 271 : ValGlyMetThrSerValMetLeuAspTrpTyrArgLeuProIleLysLysAlaArgC : 290 |||||| ! !||| !|||:!!||||||||||||:!!||| !||||||!.! ! ValGlyGluLysSerTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuV 211783 : GTTGGAGAAAAGTCTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGG : 211840 291 : ysLeuValLeuIleIleAlaMetSerAsnTyrProMetGlnLeuThrAlaGlyLysIl : 309 !:!! !|||!!:|||:!!||||||:!!! !!! :!!:!!|||||||||!!.:! alValProLeuMetIleSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLe 211841 : TCGTACCCTTGATGATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCT : 211897 310 : eValGluIleSerLeuValThrPheThrAspIle : 320 !:!!! :!!|||:!! !!:!||| !|||:!! uIleValLeuSerIleSerSerPheGlyAspVal 211898 : CATCGTTCTTTCAATCAGTAGTTTCGGTGACGTA : 211932 vulgar: gi|805765819|ref|XP_003700910.2| 270 320 . KQ414889.1 211782 211932 + 114 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 211783 211932 114 + . gene_id 27 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 211783 211932 . + . KQ414889.1 exonerate:protein2genome:local exon 211783 211932 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 211783 211932 114 + . alignment_id 27 ; Query gi|805765819|ref|XP_003700910.2| ; Align 211783 271 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 271 -> 325 Target range: 297656 -> 297818 272 : GlyMetThrSerValMetLeuAspTrpTyrArgLeuProIleLysLysAlaArgCysL : 291 |||! .!!:!! !! :!!!!:||||||!.!|||||| !!!.!:!|||! ! !| GlyAsnAlaAlaTyrAsnIleGluTrpTyrAsnLeuProProAsnArgAlaLeuAspL 297657 : GGCAATGCAGCTTATAACATCGAATGGTACAACTTACCGCCAAACAGGGCTCTCGATC : 297714 292 : euValLeuIleIleAlaMetSerAsnTyrProMetGlnLeuThrAlaGlyLysIleVa : 310 ||||||||!!:|||!.!!!::!!!!.!:!||| !::!||||||...||||||||| euValLeuMetIleGlyIleAlaLysPheProProArgLeuThrGlyGlyLysIlePh 297715 : TGGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCACAggtggaaaaatatt : 297771 311 : lGluIleSerLeuValThrPheThrAspIleMetLysMetSerMet : 325 :::||||||:!! !||||||!:!! !:!! !::...|||::: eAspIleSerIleAsnThrPheSerAlaValArgArgGlnSerLeu 297772 : cgatatatCGATAAACACGTTCAGTGCCGTACGTAgacaaagttta : 297818 vulgar: gi|805765819|ref|XP_003700910.2| 271 325 . KQ414889.1 297656 297818 + 113 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297657 297818 113 + . gene_id 28 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297657 297818 . + . KQ414889.1 exonerate:protein2genome:local exon 297657 297818 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297657 297818 113 + . alignment_id 28 ; Query gi|805765819|ref|XP_003700910.2| ; Align 297657 272 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 270 -> 323 Target range: 277563 -> 277722 271 : ValGlyMetThrSerValMetLeuAspTrpTyrArgLeuProIleLysLysAlaArgC : 290 |||||| !..! ! !||| !:!!|||||| !|||||| !||| ! !! ! ValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAspLysAspIleLeuA 277564 : GTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCGACAAAGATATTCTCA : 277621 291 : ysLeuValLeuIleIleAlaMetSerAsnTyrProMetGlnLeuThrAlaGlyLysIl : 309 !|||:!!|||||||||:!!! |||!:! :::::::::||||||||||||:: snLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIleThrAlaGlyLysLe 277622 : ATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaattaccgctggaaaatt : 277678 310 : eValGluIleSerLeuValThrPheThrAspIleMetLysMet : 323 ::::::::::|||:!! !|||||| !|||:!! ..!:!: uIleGlnMetSerValTyrThrPheGlyAspValArgSerLeu 277679 : aattcaaatgtCCGTGTACACGTTCGGCGATGTACGTTCACTT : 277722 vulgar: gi|805765819|ref|XP_003700910.2| 270 323 . KQ414889.1 277563 277722 + 106 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277564 277722 106 + . gene_id 29 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277564 277722 . + . KQ414889.1 exonerate:protein2genome:local exon 277564 277722 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277564 277722 106 + . alignment_id 29 ; Query gi|805765819|ref|XP_003700910.2| ; Align 277564 271 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1346 Query range: 8 -> 410 Target range: 217141 -> 219803 9 : LysThrIleAspAspTyrGluLysAsnValAsnLeuSerThrGlnTrpCysArgTrpI : 28 !:!||| ! !!!!:||||||||||||:::|||||||||! !|||||| !||||||: ArgThrAspTyrGluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpL 217142 : AGAACCGACTACGAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGT : 217199 29 : leLeuLysProIleGlyValTrpProThrSer<->AspValThrGlyThrGlnLysCy : 46 !:|||||||||!!:|||:!!||||||!.!||| !..!||| !!:!!!:!||| euLeuLysProMetGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIl 217200 : TGTTGAAACCGATGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAAT : 217256 47 : sMetTyrArgLeuIleAsnValMetCysTyrSerPheLeuSerPheLeuCysValPro : 65 !:!:|||!:!|||||||||!.!:!:||||||.!!!!.:!!|||||||||! !|||||| eLeuTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValPro 217257 : CCTCTACAAACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCG : 217313 66 : GlyIleLeuTyrValIleLeuGluValGluAspValTyrAsnGlnIleLysPhePheG : 85 !! !:!!||||||.!!|||||||||||||||:!!|||:!!:!!:!:|||.!.|||| CysSerMetTyrValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheG 217314 : TGCTCCATGTACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCG : 217373 86 : lyProSerSerPheCysMetMetAlaIleMetLysTyrTyrLeuMetIleLeuHisGl : 104 |||||! !! !||||||:!!||||||.!!:!:|||||||||! !:!!|||:!!|||:! lyProLeuIlePheCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLy 217374 : GTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAA : 217430 105 : uAsnAspIleArgAspCysIleGlnArgIleGluLeuAspTrpLysAsnIleSerHis : 123 ! |||||||||!!:|||:!:::!|||||||||! !||||||!:!|||:!!!!! ! sAlaAspIleArgGluCysValArgArgIleGluArgAspTrpArgAsnValArgCys 217431 : GGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGC : 217487 124 : AspAspAspLysLysIleMetValGluLysAlaLysPheGlyArgGlnLeuIleAlaL : 143 !!: ! |||!:!:!! |||:!!! !!!.|||!!.|||||||||:!!|||:!! !| GluLysAspArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuL 217488 : GAGAAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTAC : 217547 144 : euCysThrPhePheMetTyrAlaValSerArgSerGlyPheAlaPheTyrTyrValVa : 162 |||||||||||||||||||| |||||||||...|||||||||::!!. euCysThrPhePheMetTyr------------SerGlyPheValPheTyrTyrIleAl 217548 : TCTGTACCTTCTTCATGTAC------------AGCggtttcgttttttattacatCGC : 217592 163 : lLeuProThrSerAlaAspLysIleGlnAlaAlaAspAlaAsnLeuThrPheIlePro : 181 !:!!|||! !|||!.!! !:!|||! !:!!! !:!!!.!|||||||||||||||||| aIleProIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuThrPheIlePro 217593 : TATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCG : 217649 182 : LeuAlaCysProPheSerSerLeuIleIleAspThrArgTyrSerProThrAsnGluI : 201 |||!.!! !||||||!!!!.!! !||||||||||||||||||!!!||||||||||||| LeuValPheProPheThrLysTyrIleIleAspThrArgTyrThrProThrAsnGluI 217650 : TTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCTACGAACGAAA : 217709 202 : leValPheLeuLeuGlnValValAlaGlyAlaLeuIleHisSerIleAlaSerAlaAl : 220 ||||||||!!!||||||:!!:!!||||||||||||!!:|||.!!|||.!!|||||||| leValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAl 217710 : TTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGC : 217766 221 : aCysGlyLeuAlaAlaMetLeuAlaValHisAlaCysGlyGlnMetGluValLeuMet : 239 ||||.!!||||||||| !!!|||||||||||||||||||||!!:|||||||||||| aCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGluValLeuMet 217767 : TTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATG : 217823 240 : AsnTrpLeuLysHisLeuValAspGlyArgSerAspMetGlyAspThrValAspAlaA : 259 |||||||||:!!||||||:!!|||||||||:!!||||||.!!||||||||||||!.!| AsnTrpLeuGlnHisLeuIleAspGlyArgAlaAspMetSerAspThrValAspGlyA 217824 : AACTGGCTGCAACATTTAATCGACGGTAGAGCGGATATGAGCGATACTGTGGATGGTA : 217883 260 : rgIleAlaSerValValSerGlnHisValArgIleLeu{Ly} >>>> Target In : 272 |||||||||||:!!||||||||||||||||||||||||{||} 1229 rgIleAlaSerIleValSerGlnHisValArgIleLeu{Ly}++ 217884 : GAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTA{AA}gt.............. : 217926 273 : tron 1 >>>> {s}TyrLeuThrArgThrGluGlyAlaLeuGlnLeuIleSerPhe : 286 bp {|}:::||||||! !|||||| !!.!!||||||! !||||||||| ++{s}PheLeuThrLeuThrGluArgThrLeuGlnGlnIleSerPhe 217927 : ...........ag{a}tttttgaCGCTCACAGAGAGAACCCTCCAGCAAATCTCTTTC : 219193 287 : ValGluPheLeuGlyCysThrLeuAspIleCysLeuLeuGlyTyrTyrValIleMet : 306 !.!||||||||||||||||||:!!||||||||||||:!!|||||||||:!!|||:!! AlaGluPheLeuGlyCysThrMetAspIleCysLeuValGlyTyrTyrIleIleVal+ 219194 : GCTGAATTTCTAGGATGCACCATGGACATATGTCTCGTTGGATATTACATTATCGTGg : 219253 307 : >>>> Target Intron 2 >>>> GluSerLysSerAsnAspIleThrSerThr : 315 76 bp |||!!!||||||||||||:!!||||||.!! + ++GluTrpLysSerAsnAspValThrSerAla 219254 : t.........................agGAATGGAAATCGAATGATGTAACGAGTGCA : 219356 316 : ValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrI : 335 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrI 219357 : GTGACATACATCATTCTACTTATATCCCTcactttcaacattttcatattttgctaCA : 219416 336 : leGlyGluLeuValAlaGluGln >>>> Target Intron 3 >>>> CysArg : 344 ||||||||:!!|||||||||||| 73 bp |||||| leGlyGluIleValAlaGluGln++ ++CysArg 219417 : TAGGAGAGATCGTTGCTGAACAggt.........................agTGtagg : 219516 345 : LysIleGlyGluMetThrTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysL : 364 |||||||||||||||:!!|||||||||||||||||||||||| !!|||!!.||||||| LysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysLysL 219517 : aaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAAAGC : 219576 365 : euCysCysValLeuIleIleAlaMetSerAsnSerSerIleThrLeuThrAlaGlyAs : 383 ||!! !!||||||! !||||||||||||||||||||||||! !|||||||||||||| euTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAs 219577 : TCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGGAAA : 219633 384 : nMetValGluLeuSerIleGluThrPheThrAsn >>>> Target Intron 4 > : 395 |||||||||||||||||||...|||||||||:!! 87 bp nMetValGluLeuSerIleSerThrPheThrAsp++ 219634 : TATGGTCGAATTGTCTATCAGCACTTTTACCGACgt...................... : 219671 396 : >>> ValValLysThrAlaPheAlaPheLeuAsnValLeuArgThrLeuThr : 410 ||||||||||||||| !!.!!||||||||||||||||||||||||||| ++ValValLysThrAlaValThrPheLeuAsnValLeuArgThrLeuThr 219672 : ...agGTCGTTAAGACTGCAGTCACGTTTCTGAATGTACTACGAACATTGACT : 219803 vulgar: gi|805765827|ref|XP_012135096.1| 8 410 . KQ414889.1 217141 219803 + 1346 M 30 90 G 0 3 M 111 333 G 4 0 M 118 354 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 37 111 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 83 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217142 219803 1346 + . gene_id 1 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217142 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217142 217923 . + . insertions 3 ; deletions 4 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219668 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219668 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219669 219670 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219669 219755 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 219754 219755 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219756 219803 . + . KQ414889.1 exonerate:protein2genome:local exon 219756 219803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217142 219803 1346 + . alignment_id 1 ; Query gi|805765827|ref|XP_012135096.1| ; Align 217142 9 90 ; Align 217235 39 333 ; Align 217568 154 354 ; Align 219154 273 99 ; Align 219329 306 111 ; Align 219513 343 156 ; Align 219756 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1206 Query range: 13 -> 410 Target range: 212854 -> 215136 14 : TyrGluLysAsnValAsnLeuSerThrGlnTrpCysArgTrpIleLeuLysProIleG : 33 |||||||||...|||||||||||| !||| !||||||:!!|||||||||! | TyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrG 212855 : TACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGG : 212912 34 : lyValTrpPro<->ThrSerAspValThrGlyThrGlnLysCysMetTyrArgLeuIl : 51 ||:!!|||||| ! !||| !!|||:!! !! !:!!||| !!!: !||||||:! lyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIleAlaArgLeuVa 212913 : GTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGT : 212969 52 : eAsnValMetCysTyrSerPheLeuSerPheLeuCysValProGlyIleLeuTyrVal : 70 !|||..!:!:||||||.!!!!.:!!.!!!:!||| :!!||| !!! !||||||||| lAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrVal 212970 : CAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTG : 213026 71 : IleLeuGluValGluAspValTyrAsnGlnIleLysPhePheGlyProSerSerPheC : 90 .!!|||!!:||||||:::::::::...:::|||:!!!!.|||||| !! !:!!|||| PheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheC 213027 : TTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTT : 213086 91 : ysMetMetAlaIleMetLysTyrTyrLeuMetIleLeuHisGluAsnAspIleArgAs : 109 ||:!! |||:!: !||||||:!!! !:!!|||||||||! :!!||||||||| ysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgTh 213087 : GCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTAC : 213143 110 : pCysIleGlnArgIleGluLeuAspTrpLysAsnIleSerHisAspAspAspLysLys : 128 |||:!!:!!!.!!!::!!! !|||||||||||||||!!!|||!!:!!:||||||:!! rCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGlu 213144 : GTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAA : 213200 129 : IleMetValGluLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysThrPhePheM : 148 ||||||!.! !!!.|||!..||||||!:!::!:!!:!:.!!:!!|||.!!||||||| IleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPhePheM 213201 : ATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCA : 213260 149 : etTyrAlaValSerArgSerGlyPheAlaPheTyrTyrValValLeuProThrSerAl : 167 ||||| !!!||||||.!!||||||!:!:!!|||:!!|||! !||||| etTyr------------ThrGlyPheThrPheTyrPheLeuValValProIleSerAl 213261 : TGTAC------------ACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGC : 213305 168 : aAspLysIleGlnAlaAlaAspAlaAsnLeuThrPheIleProLeuAlaCysProPhe : 186 |||||||!!: !|||! !||| !|||:!!||||||! !! !:!!!.! !||| !! aAspLysMetValAlaGluAspLeuAsnValThrPheArgGlnMetValValProVal 213306 : GGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTC : 213362 187 : SerSerLeuIleIleAspThrArgTyrSerProThrAsnGluIleValPheLeuLeuG : 206 |||!!!!!!|||:!!|||..!||||||||||||..!||||||||| !!||||||:!!| SerArgPheIleValAspValArgTyrSerProValAsnGluIlePhePheLeuIleG 213363 : TCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTC : 213422 207 : lnValValAlaGlyAlaLeuIleHisSerIleAlaSerAlaAlaCysGlyLeuAlaAl : 225 ||:!!:!!||||||!.!|||||||||:!!|||||| !!.!||||||.!!|||||||| lnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAl 213423 : AGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGC : 213479 226 : aMetLeuAlaValHisAlaCysGlyGlnMetGluValLeuMetAsnTrpLeuLysHis : 244 |:!!!!!||||||||||||||||||||||||! :!!||||||!:!||||||:!!||| aValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHis 213480 : TGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACAT : 213536 245 : LeuValAspGlyArgSerAspMetGlyAspThrValAspAlaArgIleAlaSerValV : 264 |||:!!|||||||||..!||||||.!! ! !.!||||||! !||||||||| !:!!| LeuIleAspGlyArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleV 213537 : TTGATAGACGGTAGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCG : 213596 265 : alSerGlnHisValArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s : 272 ||!:!||||||||||||||||||{||} 840 bp {| alAsnGlnHisValArgIleLeu{Ly}++ ++{s 213597 : TGAACCAGCATGTGCGGATACTG{AA}gt.........................ag{A : 214462 273 : }TyrLeuThrArgThrGluGlyAlaLeuGlnLeuIleSerPheValGluPheLeuGly : 291 }!:!||| !! !..!||| !||||||!:!! !:!!||||||!.!|||!!.|||! ! }PheLeuGluLeuValGluLysAlaLeuArgGlnValSerPheAlaGluLeuLeuVal 214463 : }TTCTTAGAGCTCGTGGAGAAAGCACTTCGGCAAGTATCTTTCGCTGAATTATTAGTA : 214517 292 : CysThrLeuAspIleCysLeuLeuGlyTyrTyrValIleMet >>>> Target In : 306 ||||||:!!:!!:!!||||||:!!|||||||||:!!|||! ! 68 b CysThrValAsnLeuCysLeuValGlyTyrTyrIleIleThr++ 214518 : TGCACGGTGAATCTCTGTCTCGTTGGATATTACATAATAACGgt.............. : 214564 307 : tron 2 >>>> GluSerLysSerAsnAspIleThrSerThrValThrTyrIleIle : 320 p |||!!!!!.||||||:!!:!!|||!!!||||||||||||:!::!: ++GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValVal 214565 : ...........aggAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGGTG : 214672 321 : LeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValA : 340 |||! !|||||||||||||||||||||||||||||||||||||||||||||||||||: LeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValS 214673 : TTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGGCGAGCTTGTGT : 214732 341 : laGluGln >>>> Target Intron 3 >>>> CysArgLysIleGlyGluMet : 349 !!|||||| 123 bp |||!:!|||:!!||||||:!: erGluGln++ ++CysLysLysValGlyGluVal 214733 : CTGAACAGgt.........................agTGCAAAAAGGTCGGAGAAGTA : 214882 350 : ThrTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCysCysValLeuI : 369 :!!||||||||||||||||||||||||||||||||||||||||||||||||:!!|||| SerTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCysCysIleLeuI 214883 : TCGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGA : 214942 370 : leIleAlaMetSerAsnSerSerIleThrLeuThrAlaGlyAsnMetValGluLeuSe : 388 ||!!:||||||||||||||||||:!!! !!!!|||||||||||||||||||||||||| leMetAlaMetSerAsnSerSerValLysPheThrAlaGlyAsnMetValGluLeuSe 214943 : TCATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATGGTAGAACTGTC : 214999 389 : rIleGluThrPheThrAsn >>>> Target Intron 4 >>>> ValValLysT : 398 ||||...||||||!:!!:! 69 bp ||||||::!| rIleSerThrPheSerSer++ ++ValValArgT 215000 : TATCAGCACTTTCAGCAGTgt.........................agGTTGTTCGAA : 215098 399 : hrAlaPheAlaPheLeuAsnValLeuArgThrLeuThr : 410 ||:!! !!||||||||||||!.!|||||||||...::: hrSerValAlaPheLeuAsnAlaLeuArgThrPheSer 215099 : CATCGGTTGCCTTCTTAAACGCGTTACgaacattttca : 215136 vulgar: gi|805765827|ref|XP_012135096.1| 13 410 . KQ414889.1 212854 215136 + 1206 M 23 69 G 0 3 M 113 339 G 4 0 M 118 354 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 M 33 99 5 0 2 I 0 64 3 0 2 M 37 111 5 0 2 I 0 119 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212855 215136 1206 + . gene_id 2 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212855 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 212855 213621 . + . insertions 3 ; deletions 4 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215019 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215019 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 215020 215021 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 215020 215088 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 215087 215088 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 215089 215136 . + . KQ414889.1 exonerate:protein2genome:local exon 215089 215136 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212855 215136 1206 + . alignment_id 2 ; Query gi|805765827|ref|XP_012135096.1| ; Align 212855 14 69 ; Align 212927 37 339 ; Align 213266 154 354 ; Align 214463 273 99 ; Align 214630 306 111 ; Align 214864 343 156 ; Align 215089 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1102 Query range: 9 -> 410 Target range: 226900 -> 230518 10 : ThrIleAspAspTyrGluLysAsnValAsnLeuSerThrGlnTrpCysArgTrpIleL : 29 ||| :!!||||||:!!:!! !!:!!|||||||||! !|||! ! !||||||:!:| ThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuL 226901 : ACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGT : 226958 30 : euLysProIleGlyValTrpProThrSerAspValThrGly<->ThrGlnLysCysMe : 47 ||||||||:!!|||:!!||||||:!!||| ! !!:!..! ! ! !!:!|||.! euLysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPh 226959 : TGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTT : 227015 48 : tTyrArgLeuIleAsnValMetCysTyrSerPheLeuSerPheLeuCysValProGly : 66 .! ! !!|||!!:..! !!:!:||||||:!!.!.:!!|||||| !! ||| !!.!! eSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSer 227016 : CTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGC : 227072 67 : IleLeuTyrValIleLeuGluValGluAspValTyrAsnGlnIleLysPhePheGlyP : 86 !|||||||||:!!|||||||||:!!! !!.!|||||| !:!:|||.!..!!|||| GlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyP 227073 : GGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTC : 227132 87 : roSerSerPheCysMetMetAlaIleMetLysTyrTyrLeuMetIleLeuHisGluAs : 105 ||! !||||||! ! !|||:!!:!!:!:||||||! !:!!:!!! !!!||||||:! roMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAs 227133 : CGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGA : 227189 106 : nAspIleArgAspCysIleGlnArgIleGluLeuAspTrpLysAsnIleSerHisAsp : 124 !||||||! !!!:|||:!!:!!||||||:!!! !|||||||||||||||!!!:!! pAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeu 227190 : CGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTG : 227246 125 : AspAspLysLysIleMetValGluLysAlaLysPheGlyArgGlnLeuIleAlaLeuC : 144 !!:|||!:!!!.:!:|||||| ! ! ||| ! !:!||||||:!!||||||.!!:!!| GluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleC 227247 : GAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTT : 227306 145 : ysThrPhePheMetTyrAlaValSerArgSerGlyPheAlaPheTyrTyrValValLe : 163 |||||||||||:!:!:! |||...|||...|||:::|||:!!|||:! ysThrPhePheValPhe------------SerSerPheValPhePheTyrIleValVa 227307 : GCACGTTTTTCGTCTTC------------AgtagtttcgtatttttctacATCGTCGT : 227351 164 : uProThrSerAlaAspLysIleGlnAlaAlaAspAlaAsnLeuThrPheIleProLeu : 182 !|||! !!:!|||! !..:!! !.!!! !|||!.!|||! !!:!!:!|||! !:!! lProIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMet 227352 : ACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATG : 227408 183 : AlaCysProPheSerSerLeuIleIleAspThrArgTyrSerProThrAsnGluIleV : 202 !!! !|||||| !!!.!:!!||| !|||..!|||||||||||| !||||||||| ProPheProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIleP 227409 : CCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCT : 227468 203 : alPheLeuLeuGlnValValAlaGlyAlaLeuIleHisSerIleAlaSerAlaAlaCy : 221 !!|||! !:!!||| !!|||.!!||| !:!!:!:|||.!!:!!.!!||||||||||| hePheSerValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCy 227469 : TCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTG : 227525 222 : sGlyLeuAlaAlaMetLeuAlaValHisAlaCysGlyGlnMetGluValLeuMetAsn : 240 |.!!:!!||||||:!!||||||||||||||||||||||||||||||||||||:!!::! sSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSer 227526 : CAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCC : 227582 241 : TrpLeuLysHisLeuValAspGlyArgSerAspMetGlyAspThrValAspAlaArgI : 260 |||||| !||||||:!!|||||||||:!!||||||.!! ! |||:!!|||! !|||| TrpLeuGlyHisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAspAspArgI 227583 : TGGCTGGGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGATGATAGAA : 227642 261 : leAlaSerValValSerGlnHisValArgIleLeu{Ly} >>>> Target Intro : 272 ||||||||:!!|||!!!!!.|||||||||||||||{!!} 396 bp leAlaSerIleValThrHisHisValArgIleLeu{As}++ 227643 : TCGCTAGCATCGTCACTCACCACGTTCGAATATTG{AA}gt................. : 227682 273 : n 1 >>>> {s}TyrLeuThrArgThrGluGlyAlaLeuGlnLeuIleSerPheVal : 287 {.}!:!|||.!!! !! !||| !.!!:!!|||! !|||:!!|||||| ++{n}PheLeuAlaLeuIleGluLysThrMetGlnGlnIleAlaPheVal 227683 : ........ag{C}TTTCTGGCCCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTA : 228119 288 : GluPheLeuGlyCysThrLeuAspIleCysLeuLeuGlyTyrTyrValIleMet >> : 306 ||||||||||||||||||:!! !:!:||||||:!!! !||||||:!!|||! ! GluPheLeuGlyCysThrIleIleLeuCysLeuIleGluTyrTyrIleIleThr++ 228120 : GAATTTTTAGGGTGTACAATAATTCTGTGCCTCATCGAGTATTACATCATAACGgt.. : 228178 307 : >> Target Intron 2 >>>> GluSerLysSerAsnAspIleThrSerThrVal : 316 72 bp |||!!!!!. !!!!.!!::!!|||! !.!!||| ++GluTrpAsnProLysGluLeuThrPheAlaVal 228179 : .......................agGAATGGAATCCGAAAGAGTTAACATTTGCTGTA : 228278 317 : ThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleG : 336 |||||| ! ||||||:!!|||!!!||||||||||||||||||||||||||||||| ThrTyrSerAlaLeuLeuLeuSerPheThrPheAsnIlePheIlePheCysTyrIleG 228279 : ACTTACTCAGCGTTACTTTTATCCTTTAccttcaatattttcatattttgttaTATAG : 228338 337 : lyGluLeuValAlaGluGln >>>> Target Intron 3 >>>> CysArgLys : 345 |||||:!!|||||||||!!. 1889 bp ||||||||| lyGluIleValAlaGluHis++ ++CysArgLys 228339 : GAGAAATTGTTGCCGAACACgt.........................agTGCAGAAAA : 230254 346 : IleGlyGluMetThrTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuC : 365 :!!||||||! !:!!|||||||||||||||||||||||| !!|||||||||||||||| ValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyAsnLysLysLeuC 230255 : GTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAAACAAGAAGCTCT : 230314 366 : ysCysValLeuIleIleAlaMetSerAsnSerSerIleThrLeuThrAlaGlyAsnMe : 384 |||||:!!|||||||||||||||||||||!!!|||! ! !!!!|||||||||||||| ysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheThrAlaGlyAsnMe 230315 : GTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTACAGCAGGAAACAT : 230371 385 : tValGluLeuSerIleGluThrPheThrAsn >>>> Target Intron 4 >>>> : 395 |||||||||||||:!!.!.||||||!:!:!! 67 bp tValGluLeuSerValAsnThrPheSerAsp++ 230372 : GGTTGAATTATCCGTAAACACTTTCAGCGACgt......................... : 230406 396 : ValValLysThrAlaPheAlaPheLeuAsnValLeuArgThrLeuThr : 410 ||||||||||||:!!.!.!.!|||||||||:!!||||||||||||||| ++ValValLysThrSerMetGlyPheLeuAsnMetLeuArgThrLeuThr 230407 : agGTCGTTAAAACGTCCATGGGTTTCTTAAACATGCTACGAACACTGACG : 230518 vulgar: gi|805765827|ref|XP_012135096.1| 9 410 . KQ414889.1 226900 230518 + 1102 M 33 99 G 0 3 M 107 321 G 4 0 M 118 354 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226901 230518 1102 + . gene_id 3 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226901 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226901 227679 . + . insertions 3 ; deletions 4 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230403 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230403 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 230404 230405 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 230404 230470 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 230469 230470 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230471 230518 . + . KQ414889.1 exonerate:protein2genome:local exon 230471 230518 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226901 230518 1102 + . alignment_id 3 ; Query gi|805765827|ref|XP_012135096.1| ; Align 226901 10 99 ; Align 227003 43 321 ; Align 227324 154 354 ; Align 228077 273 99 ; Align 228248 306 111 ; Align 230248 343 156 ; Align 230471 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 932 Query range: 12 -> 410 Target range: 208191 -> 212081 13 : AspTyrGluLysAsnValAsnLeuSerThrGlnTrpCysArgTrpIleLeuLysProI : 32 :!!|||:!!!!.:!!:!!!:!!!!!:!..!!:: ! ! !|||! |||||| !| AsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuLysIleI 208192 : AACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGAAGATAA : 208249 33 : leGlyValTrpProThrSer<->AspValThrGlyThrGlnLysCysMetTyrArgLe : 50 ||||| !||||||! !||| ||| !:!! !! !:!!!!. !!..!:!!! !|| leGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHisIleLe 208250 : TCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCATATTCT : 208306 51 : uIleAsnValMetCysTyrSerPheLeuSerPheLeuCysValProGlyIleLeuTyr : 69 |:!!||||||:!: !!:!!!!!!!.|||.!!|||:!! :!!||| ! !:!!!:! uLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGlyMetPhe 208307 : CTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATGTTC : 208363 70 : ValIleLeuGluValGluAspValTyrAsnGlnIleLysPhePheGlyProSerSerP : 89 !.!||||||! !||||||||| !!|||:!!|||:!!|||.!!! !.!! !! !|||| AlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaLeuSerP 208364 : GCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTCTGAGCT : 208423 90 : heCysMetMetAlaIleMetLysTyrTyrLeuMetIleLeuHisGluAsnAspIleAr : 108 ||! !|||||||||.!!! !|||||| :!!|||! !:!!!.!|||..!|||||||| hePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAspIleAr 208424 : TCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGACATACG : 208480 109 : gAspCysIleGlnArgIleGluLeuAspTrpLysAsnIleSerHisAspAspAspLys : 127 | ! |||:!!:!! !:!!||| !||||||!:!|||:!:..!|||!!:!!:|||!:! gLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGluAspArg 208481 : GAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAGGACAGG : 208537 128 : LysIleMetValGluLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysThrPheP : 147 |||||||||:!!!!:!!.|||!..|||!.!|||:!!||||||!.!:!!||| ! !| LysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysGlyAlaP 208538 : AAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCGGAGCTT : 208597 148 : heMetTyrAlaValSerArgSerGlyPheAlaPheTyrTyrValValLeuProThrSe : 166 |||||||| .!!||| |||||||||:!!!.!|||||| !!! heMetTyr------------GlyGlyValIlePheTyrTyrIleAlaLeuProLeuTh 208598 : TCATGTAC------------GGAGGtgtaattttctattacaTCGCTTTGCCGCTCAC : 208642 167 : rAlaAspLysIleGlnAlaAlaAspAlaAsnLeuThrPheIleProLeuAlaCysPro : 185 ! !||||||:!! ! !! !! !!.!|||||||||!:!! ! !|||!.!! !||| rArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrPro 208643 : TCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCT : 208699 186 : PheSerSerLeuIleIleAspThrArgTyrSerProThrAsnGluIleValPheLeuL : 205 !! !!!.!!!!|||:!:|||..!||||||||||||..!||||||||| !!!:! !: ValProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrV 208700 : GTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGG : 208759 206 : euGlnValValAlaGlyAlaLeuIleHisSerIleAlaSerAlaAlaCysGlyLeuAl : 224 !!|||:!!:!!:!!||| !:!! !|||!:!|||.!! !!.!|||||||||||||| alGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAl 208760 : TACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGC : 208816 225 : aAlaMetLeuAlaValHisAlaCysGlyGlnMetGluValLeuMetAsnTrpLeuLys : 243 ||||:!!||||||:!!|||||||||||||||:!!:!!:!!||||||::!|||:!!:!! aAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGlu 208817 : CGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAG : 208873 244 : HisLeuValAspGlyArgSerAspMetGlyAspThrValAspAlaArgIleAlaSerV : 263 ! |||||||||||||||..!||| !! ! ! !.!:!!||| !|||:!:|||!:!: LysLeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnI 208874 : AAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATA : 208933 264 : alValSerGlnHisValArgIleLeu{Ly} >>>> Target Intron 1 >>>> : 272 !!|||..!||||||||||||:!::!!{!!} 1536 bp leValGluGlnHisValArgValIle{As}++ + 208934 : TCGTGGAGCAGCATGTTCGAGTGATC{AA}gt.........................a : 210496 273 : {s}TyrLeuThrArgThrGluGlyAlaLeuGlnLeuIleSerPheValGluPheLeu : 290 {.}!:!:!!.!!! !||||||..! !|||!!. !||||||!!.:!!|||.!.:!! +{n}PheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGluMetVal 210497 : g{T}TTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAATGGTG : 210550 291 : GlyCysThrLeuAspIleCysLeuLeuGlyTyrTyrValIleMet >>>> Target : 306 ||||||||||||:!!!!:|||!!!||||||||||||..!!!:!!: 6 GlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210551 : GGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt........... : 210600 307 : Intron 2 >>>> GluSerLysSerAsnAspIleThrSerThrValThrTyrIle : 319 6 bp |||!!! ! |||!!.||| !! !|||!:!:!!||||||||| ++GluTrpAspSerLysAspProIleSerSerLeuThrTyrIle 210601 : ..............agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATA : 210703 320 : IleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuV : 339 :!!||||||! !|||:!!||||||||||||||||||||||||||||||||||||:!!: ValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValL 210704 : GTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGT : 210763 340 : alAlaGluGln >>>> Target Intron 3 >>>> CysArgLysIleGlyGlu : 348 !!||||||||| 999 bp !|||:!!|||||| euAlaGluGln++ ++ThrValLysValGlyGlu 210764 : TGGCTGAACAggt.........................agACAGTAAAAGTTGGAGAA : 211789 349 : MetThrTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCysCysValL : 368 ! !:!!|||||||||!!:|||||||||:!!||||||!!.||| ||| ! !| LysSerTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValValProL 211790 : AAGTCTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACCCT : 211849 369 : euIleIleAlaMetSerAsnSerSerIleThrLeuThrAlaGlyAsnMetValGluLe : 387 ||!!:|||:!!||||||:!!|||!!!! !! !:!!||||||||||||:!::!!! || euMetIleSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleValLe 211850 : TGATGATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTTCT : 211906 388 : uSerIleGluThrPheThrAsn >>>> Target Intron 4 >>>> ValValL : 397 |||||||...!:!||| !:!! 104 bp |||:!!| uSerIleSerSerPheGlyAsp++ ++ValIleL 211907 : TTCAATCAGTAGTTTCGGTGACgt.........................agGTTATCA : 212040 398 : ysThrAlaPheAlaPheLeuAsnValLeuArgThrLeuThr : 410 |||||:!! ! .!!!:!||||||:!!|||||||||!!!||| ysThrSerValThrTyrLeuAsnMetLeuArgThrPheThr 212041 : AGACTTCGGTAACATACTTGAACATGCTACGAACATTCACA : 212081 vulgar: gi|805765827|ref|XP_012135096.1| 12 410 . KQ414889.1 208191 212081 + 932 M 26 78 G 0 3 M 111 333 G 4 0 M 118 354 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 995 3 0 2 M 52 156 5 0 2 I 0 100 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208192 212081 932 + . gene_id 4 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208192 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208192 208961 . + . insertions 3 ; deletions 4 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211929 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 211930 211931 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 211930 212033 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 212032 212033 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 212034 212081 . + . KQ414889.1 exonerate:protein2genome:local exon 212034 212081 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208192 212081 932 + . alignment_id 4 ; Query gi|805765827|ref|XP_012135096.1| ; Align 208192 13 78 ; Align 208273 39 333 ; Align 208606 154 354 ; Align 210499 273 99 ; Align 210664 306 111 ; Align 211774 343 156 ; Align 212034 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 878 Query range: 12 -> 274 Target range: 221357 -> 222134 13 : AspTyrGluLysAsnValAsnLeuSerThrGlnTrpCysArgTrpIleLeuLysProI : 32 ||||||:!!! !||||||!!.||||||..!|||! ! !!||||||||||||||||||| AspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProI 221358 : GATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGA : 221415 33 : leGlyValTrpProThrSer<->AspValThrGlyThrGlnLysCysMetTyrArgLe : 50 ||||||||||||||!.!||| :!!:!!:!! !..!:!!!:!! !:!:||| !!|| leGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLe 221416 : TCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 51 : uIleAsnValMetCysTyrSerPheLeuSerPheLeuCysValProGlyIleLeuTyr : 69 ||||||||||:!:|||||||||.!.:!!!!!||||||! |||||| !!! !|||||| uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 70 : ValIleLeuGluValGluAspValTyrAsnGlnIleLysPhePheGlyProSerSerP : 89 ||||||||||||||||||||||||||||||::!||||||!!.!!.||||||! !|||| ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 90 : heCysMetMetAlaIleMetLysTyrTyrLeuMetIleLeuHisGluAsnAspIleAr : 108 |||||:!!||||||.!!:!:||||||:!!|||:!!||||||:!!|||||||||||||| heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 109 : gAspCysIleGlnArgIleGluLeuAspTrpLysAsnIleSerHisAspAspAspLys : 127 |!!:||||||:!!|||||||||! !|||||||||||||||!!!:!!..! ! |||||| gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 128 : LysIleMetValGluLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysThrPheP : 147 ! ||||||:!!|||!!.|||! |||||||||!:!|||||| !:!!|||||||||| AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 148 : heMetTyrAlaValSerArgSerGlyPheAlaPheTyrTyrValValLeuProThrSe : 166 |||||||| |||||||||...|||||||||::!!.!:!!||| !|| heMetTyr------------SerGlyPheValPheTyrTyrIleAlaIleProPheSe 221764 : TCATGTAC------------AGTggtttcgttttttattacatAGCCATACCGTTTAG : 221808 167 : rAlaAspLysIleGlnAlaAlaAspAlaAsnLeuThrPheIleProLeuAlaCysPro : 185 |!.!! !||||||! ||| !|||...|||:::||||||||||||:!!!.!! !||| rValGlyLysIleProAlaGlnAspValAsnValThrPheIleProMetValPhePro 221809 : CGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCT : 221865 186 : PheSerSerLeuIleIleAspThrArgTyrSerProThrAsnGluIleValPheLeuL : 205 ||||||!!!!!!|||:!!||||||||||||||||||..!|||||||||:!!|||! !| PheSerArgPheIleValAspThrArgTyrSerProValAsnGluIleLeuPheSerL 221866 : TTCTCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGC : 221925 206 : euGlnValValAlaGlyAlaLeuIleHisSerIleAlaSerAlaAlaCysGlyLeuAl : 224 |||||:!!:!!||||||||||||!!:|||||||||.!!||||||||||||.!!|||!. euGlnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuVa 221926 : TTCAAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGT : 221982 225 : aAlaMetLeuAlaValHisAlaCysGlyGlnMetGluValLeuMetAsnTrpLeuLys : 243 !||||||!!!||||||||||||||||||||||||:!!|||||||||!:!||||||||| lAlaMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLys 221983 : TGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAA : 222039 244 : HisLeuValAspGlyArgSerAspMetGlyAspThrValAspAlaArgIleAlaSerV : 263 ||||||:!!:!!||||||:!!|||||| !!:!!!.!|||||| !|||||||||!.!: HisLeuIleAsnGlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysI 222040 : CATTTGATCAACGGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGA : 222099 264 : alValSerGlnHisValArgIleLeuLysTyrLeu : 274 !!|||!:!||||||||||||||||||:!!|||:!! leValAsnGlnHisValArgIleLeuGlnTyrVal 222100 : TTGTGAATCAACACGTTCGAATATTGCAGTATGTA : 222134 vulgar: gi|805765827|ref|XP_012135096.1| 12 274 . KQ414889.1 221357 222134 + 878 M 26 78 G 0 3 M 111 333 G 4 0 M 121 363 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221358 222134 878 + . gene_id 5 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221358 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221358 222134 . + . insertions 3 ; deletions 4 KQ414889.1 exonerate:protein2genome:local similarity 221358 222134 878 + . alignment_id 5 ; Query gi|805765827|ref|XP_012135096.1| ; Align 221358 13 78 ; Align 221439 39 333 ; Align 221772 154 363 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 674 Query range: 1 -> 410 Target range: 284469 -> 287338 2 : GlnLysThrSerValHisLysLysThrIleAspAspTyrGluLysAsnValAsnLeuS : 21 |||! !.!! !||| !.....!||| !... !::!!:! !:!! !! ! !| GlnMetAlaLeuValThrSerSerThrAspSerThrTrpAspThrAspTrpMetTyrS 284470 : CAAATGGCACTGGTCACTTCTTCAACCGATTCGACGTGGGACACGGATTGGATGTACA : 284527 22 : erThrGlnTrpCysArgTrpIleLeuLysProIleGlyValTrpProThrSer<->As : 39 ||..!||| ! !||||||.!!|||||||||||||||||||||||| !||| erValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuCy 284528 : GCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTG : 284584 40 : pValThrGlyThrGlnLysCysMetTyrArgLeuIleAsnValMetCysTyrSerPhe : 58 !|||||| ! !:!!||| !! ! ! !:!!:!! :!!!!: !!! !! !.!. sValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLeu 284585 : CGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTG : 284641 59 : LeuSerPheLeuCysValProGlyIleLeuTyrValIleLeuGlu<->ValGluAspV : 77 :!!.!!||||||! |||||| !! !|||! !..!:!:|||!!: ..!! |||: IleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspL 284642 : ATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATC : 284701 78 : alTyrAsnGlnIleLysPhePheGlyProSerSerPheCysMetMetAlaIleMetLy : 96 !! !!!..:!!||||||.!..!!|||||| !|||||||||||||||||| !!:|| euAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleLy 284702 : TCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAA : 284758 97 : sTyrTyrLeuMetIleLeuHisGluAsnAspIleArgAspCysIleGlnArgIleGlu : 115 |||||||:!!:!:|||! !!.!! ..! ! ||| !!.!.|||:!::!! !|||... sTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIleArg 284759 : GTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGT : 284815 116 : LeuAspTrpLys<->AsnIleSerHis<-><->AspAspAspLysLysIleMetValG : 132 !||||||... !..:!!|||||| :::::::::::::::|||||| !! AlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMetArgA 284816 : GCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTGAGGG : 284875 133 : luLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysThrPhePheMetTyrAlaVa : 151 !:!..|||!:!.!!||||||...||| !!!!|||.!! !||||||||| spSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyr----- 284876 : ACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTAT----- : 284929 152 : lSerArgSerGlyPheAlaPheTyrTyrValValLeuProThrSerAlaAspLysIle : 170 |||||| !|||||| !..!|||:!!||| !!!!.!!! :::! -------SerGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThr 284930 : -------TCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACG : 284977 171 : GlnAlaAlaAspAlaAsnLeuThrPheIleProLeuAlaCysProPheSerSerLeuI : 190 :!! ! !||| ||| !||| ! ! ! !!! !|||! !|||.!!! ! !! !: GluIleIleAsp---AsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyL 284978 : GAGATCATCGAC---AACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCC : 285034 191 : leIleAspThrArgTyrSerProThrAsnGluIleValPheLeuLeuGlnValValAl : 209 !!:!!||| !!||| !||||||:!! !||||||||| !!!:!!||| !:!!|| euLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAl 285035 : TTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGC : 285091 210 : aGlyAlaLeuIleHisSerIleAlaSerAlaAlaCysGlyLeuAlaAlaMetLeuAla : 228 |!.! !:!!|||:!!|||:!!.!! !!.!||||||.!!|||||||||:!!!!!!.! aAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheVal 285092 : CGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTC : 285148 229 : ValHisAlaCysGlyGlnMetGluValLeuMetAsnTrpLeuLysHisLeuValAspG : 248 :!!|||!.!|||||||||.!...!:!!|||:!!!.. !||| ! ! |||||||||| MetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspG 285149 : ATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACG : 285208 249 : ly<->ArgSerAspMetGly<->AspThrValAspAlaArgIleAlaSerValValSe : 265 || !:!.!! ! !||| ..!||| !!!: !|||:!:!.!..!:!!:!!.. lyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGl 285209 : GAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGA : 285265 266 : rGlnHisValArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}Tyr : 273 !!!.|||:!!!:!||||||{ } 1411 bp { }!:! uHisHisLeuLysIleLeu{Gl}++ ++{y}Phe 285266 : GCATCATCTGAAGATACTG{GG}gt.........................ag{T}TTT : 286700 274 : LeuThrArgThrGluGlyAlaLeuGlnLeuIleSerPheValGluPheLeuGlyCysT : 293 :!!:!!!:!! !|||||| !|||.!. !|||!!!||||||||| ! :!!||||||| IleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysT 286701 : ATATCGCAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGTTGCA : 286760 294 : hrLeuAspIleCysLeuLeuGlyTyrTyrValIleMet >>>> Target Intron : 306 |||||:!!||||||!!!||||||||||||:!!:!:! ! 80 bp hrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeuThr++ 286761 : CGTTGAACATATGCTTTTTGGGATATTATTTACTGACGgt.................. : 286801 307 : 2 >>>> GluSerLysSerAsnAspIleThrSerThrValThrTyrIleIleLeuL : 322 |||!!!:!!..!!:!!!:! !! !.!!|||:!!|||||| !! |||| ++GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuL 286802 : .......agGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGC : 286927 323 : euIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGl : 341 ||:!!|||!!!|||||||||:!!||||||.!!|||||||||||||||:!!:!!:!!|| euValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGl 286928 : TGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGA : 286984 342 : uGln >>>> Target Intron 3 >>>> CysArgLysIleGlyGluMetThrT : 351 |||| 74 bp ||| !|||:!!||| ! |||| uGln++ ++CysLeuLysValGlyLeuSerThrT 286985 : ACaggt.........................agtGCTTAAAAGTCGGCTTGTCAACTT : 287088 352 : yrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCysCysValLeuIleIl : 370 ||||||||!!:||||||||||||||||||!!.! ! ! ! !!! :!!||||||.! yrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePh 287089 : ACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATT : 287145 371 : eAlaMetSerAsnSerSerIleThrLeuThrAlaGlyAsnMetValGluLeuSerIle : 389 !|||:!!|||||||||||||||! !||||||||||||!!.!!::!!!!:||||||:!! eAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeu 287146 : CGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTA : 287202 390 : GluThrPheThrAsn >>>> Target Intron 4 >>>> ValValLysThrAl : 399 ...!:!||| !!:! 71 bp |||:!!|||:!!|| SerSerPheCysSer++ ++ValLeuLysSerAl 287203 : AGCAGCTTCTGCAGCgt.........................agGTGTTGAAATCGGC : 287303 400 : aPheAlaPheLeuAsnValLeuArgThrLeuThr : 410 |||||||!:!|||!:!:!!||||||||||||||| aPheAlaTyrLeuSerLeuLeuArgThrLeuThr 287304 : ATTCGCATATCTGAGCTTATTACGTACGCTAACC : 287338 vulgar: gi|805765827|ref|XP_012135096.1| 1 410 . KQ414889.1 284469 287338 + 674 M 37 111 G 0 3 M 35 105 G 0 3 M 46 138 G 0 3 M 4 12 G 0 6 M 26 78 G 4 0 M 21 63 G 1 0 M 73 219 G 0 3 M 5 15 G 0 3 M 18 54 S 0 2 5 0 2 I 0 1407 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284470 287338 674 + . gene_id 6 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284470 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284470 285287 . + . insertions 21 ; deletions 5 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286698 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287220 287221 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 287220 287290 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287289 287290 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 287291 287338 . + . KQ414889.1 exonerate:protein2genome:local exon 287291 287338 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284470 287338 674 + . alignment_id 6 ; Query gi|805765827|ref|XP_012135096.1| ; Align 284470 2 111 ; Align 284584 39 105 ; Align 284692 74 138 ; Align 284833 120 12 ; Align 284851 124 78 ; Align 284929 154 63 ; Align 284992 176 219 ; Align 285214 249 15 ; Align 285232 254 54 ; Align 286700 273 99 ; Align 286879 306 111 ; Align 287064 343 156 ; Align 287291 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 639 Query range: 12 -> 410 Target range: 256631 -> 258738 13 : AspTyrGluLysAsnValAsnLeuSerThrGlnTrpCysArgTrpIleLeuLysProI : 32 :!!!:!:!!!.. !! !:!!! !||| !|||! ! !||||||.!!|||||||||| AsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 256632 : AATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTA : 256689 33 : leGlyValTrpProThrSerAspValThrGlyThr<->GlnLysCysMetTyrArgLe : 50 |||||!.!|||||| !!|||... !||| !||| :!!::! !:!:! ! !:! leGlyAlaTrpProProSerSerSerThrThrThrLeuGluArgAsnValSerIleVa 256690 : TAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGT : 256746 51 : uIleAsnValMetCysTyrSerPheLeuSerPheLeuCysValProGlyIleLeuTyr : 69 !:!:|||:!!:!:||||||.!!! !:!!! !||| !! :!!||| !!:!:|||:!! lLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIleProCysLeuLeuHis 256747 : TTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCAT : 256803 70 : ValIleLeuGluValGluAspValTyrAsnGlnIleLysPhePheGlyProSerSerP : 89 |||.!!|||!!:! !!!:..! !!||| ::::::||| |||||||||! !||| ValPheLeuAspAspAspSerPheTyrMetLysValLysAsnPheGlyProMetSerH 256804 : GTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCC : 256863 90 : heCysMetMetAlaIleMetLysTyrTyrLeuMetIleLeuHisGluAsnAspIleAr : 108 !!! !!:!!:::! ! !!.||| |||:!!:!:|||!!.! !!!.|||||||| isTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleAr 256864 : ATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACG : 256920 109 : gAspCysIleGlnArgIleGluLeuAspTrpLysAsnIleSerHisAspAspAspLys : 127 | !!|||:!!:!!!.!|||||| !||||||!:!! :!:!!!...!!: ! |||:!! gTyrCysValGluHisIleGluThrAspTrpArgMetValArgArgGluLysAspGln 256921 : CTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAA : 256977 128 : LysIleMetValGluLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysThrPheP : 147 :!!:!:|||:!!:!!!!.|||!:!||||||||| ! :!! !.!!!!!|||.!! GlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheCysAla---- 256978 : CAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCA---- : 257034 148 : heMetTyrAlaValSerArgSerGlyPheAlaPheTyrTyrValValLeuProThrSe : 166 |||:!!! !!:!|||||| ::::::||| !! ! !! !!: --------AlaIleMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAs 257035 : --------GCTATCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAA : 257082 167 : rAlaAspLysIleGlnAlaAlaAspAlaAsnLeuThrPheIleProLeuAlaCysPro : 185 !.!!!!:! !|||!!.!.!!.!:!!! !!.. !! ! ! ! !||| !! ! !! nThrGluIleIleHisValGlyAsnGluThrThrIleValArgValLeuProValThr 257083 : CACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACC : 257139 186 : PheSerSerLeuIleIleAspThrArgTyrSerProThrAsnGluIleValPheLeuL : 205 ! ! !!.! !:!::!::!!..! ! ! ||||||||||||||||||||| !!!!!: ValTyrLysLysLeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheM 257140 : GTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTA : 257199 206 : euGlnValValAlaGlyAlaLeuIleHisSerIleAlaSerAlaAlaCysGlyLeuAl : 224 !!|||..! !:!!..! !:!! !!!!! !.!! !::! !! !.!!||||| etGlnThrTrpSerSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAl 257200 : TGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGC : 257256 225 : aAlaMetLeuAlaValHisAlaCysGlyGlnMetGluValLeuMetAsnTrpLeuLys : 243 ||||:!:!!!|||..!||||||! !||||||:!! |||||||||:::|||:!!! ! aAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThr 257257 : GGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACA : 257313 244 : HisLeuValAspGlyArgSerAspMetGlyAspThrValAsp<->AlaArgIleAlaS : 262 .!.!!!|||:!!! ! !!!!:!! ||| !!:!|||!.! GluPheValAsnGluSerArgAsnArgGluLysThrPheProPheLysGlnIleGlyV 257314 : GAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCG : 257373 263 : erValValSerGlnHisValArgIleLeu{Ly} >>>> Target Intron 1 >> : 272 !:!!|||..!!!.|||:!!|||:!:|||{!.} 76 bp alIleValGluHisHisLeuArgValLeu{Se}++ 257374 : TGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt....................... : 257407 273 : >> {s}TyrLeuThrArgThrGluGlyAlaLeuGlnLeuIleSerPheValGluPhe : 289 {.}!:!:!!:!! !! !|||! !!.!:!!.!.! !|||!!!|||:!!|||!!. ++{r}PheIleSerTyrIleGluGluValMetAsnArgIleCysPheLeuGluLeu 257408 : ..ag{T}TTCATATCATATATCGAGGAAGTGATGAACCGAATATGTTTTTTAGAGTTG : 257530 290 : LeuGlyCysThrLeuAspIleCysLeuLeuGlyTyrTyrValIleMet >>>> Tar : 306 !!! !!|||||||||! !||||||:!!||||||||||||:!!:!! ! PheArgCysThrLeuAlaIleCysMetLeuGlyTyrTyrIleLeuAla++ 257531 : TTTAGATGCACGCTGGCTATATGCATGCTGGGATACTACATTCTTGCGgt........ : 257583 307 : get Intron 2 >>>> GluSerLysSerAsnAspIleThrSerThrValThrTyr : 318 684 bp |||!!!...!!!...|||||| ::: :::||| ++GluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyr 257584 : .................aggaATGGTCTACGCaagatattcaaaatttgagttcgtaC : 258301 319 : IleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluL : 338 .!!!!::!!||||||||||||:::||||||||||||:::...|||||||||||||||: PheMetIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluI 258302 : TTTATGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAA : 258361 339 : euValAlaGluGln >>>> Target Intron 3 >>>> CysArgLysIleGly : 347 !!:!!.!!|||||| 90 bp |||!:!|||:!!||| leLeuThrGluGln++ ++CysLysLysValGly 258362 : TATTAACAGAACAGgt.........................agTGCAAGAAAGTTGGC : 258478 348 : GluMetThrTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCysCysV : 367 !!::!!..!||||||! !!!:|||||| !||||||! !!!.!:!! !||| !! : AspValValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuI 258479 : GACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAA : 258538 368 : alLeuIleIleAlaMetSerAsnSerSerIleThrLeuThrAlaGlyAsnMetValGl : 386 !!|||:!!|||||| |||!:! ! !:!! !:!!|||||||||...... .. leLeuValIleAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePheHi 258539 : TTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttca : 258595 387 : uLeuSerIleGluThrPheThrAsn >>>> Target Intron 4 >>>> ValV : 396 .::!|||||| ! ||||||!:!:!! 69 bp |||: sMetSerIleTyrThrPheSerAsp++ ++ValI 258596 : catGTCCATTTACACATTCAGCGATgt.........................agGTAA : 258694 397 : alLysThrAlaPheAlaPheLeuAsnValLeuArgThrLeuThr : 410 !!||||||:!!||||||!:!||||||:!!|||||| !:!!:!! leLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnValSer 258695 : TAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGTATCG : 258738 vulgar: gi|805765827|ref|XP_012135096.1| 12 410 . KQ414889.1 256631 258738 + 639 M 31 93 G 0 3 M 102 306 G 4 0 M 108 324 G 0 3 M 14 42 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256632 258738 639 + . gene_id 7 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256632 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256632 257404 . + . insertions 6 ; deletions 4 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256632 258738 639 + . alignment_id 7 ; Query gi|805765827|ref|XP_012135096.1| ; Align 256632 13 93 ; Align 256728 44 306 ; Align 257034 150 324 ; Align 257361 258 42 ; Align 257482 273 99 ; Align 258265 306 111 ; Align 258466 343 156 ; Align 258691 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 558 Query range: 1 -> 410 Target range: 278522 -> 280551 2 : GlnLysThrSerValHisLysLysThrIleAspAspTyrGluLysAsnValAsnLeuS : 21 |||! !.!! !||| !..!..!||| !... !::.!.! !:!! !! ! !| GlnMetAlaLeuValThrSerSerThrAspSerThrTrpAsnThrAspTrpMetTyrS 278523 : CAAATGGCACTGGTCACTTCGTCAACCGATTCGACGTGGAACACGGATTGGATGTACA : 278580 22 : erThrGlnTrpCysArgTrpIleLeuLysProIleGlyValTrpProThrSer<->As : 39 ||..!||| ! !||||||.!!|||||||||||||||||||||||| !||| erValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuCy 278581 : GCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTG : 278637 40 : pValThrGlyThrGlnLysCysMetTyrArgLeuIleAsnValMetCysTyrSerPhe : 58 !|||||| ! !:!!||| !! ! ! !:!!:!! :!!!!: !!! !! !.!. sValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLeu 278638 : CGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTG : 278694 59 : LeuSerPheLeuCysValProGlyIleLeuTyrValIleLeuGlu<->ValGluAspV : 77 :!!.!!||||||! |||||| !! !|||! !..!:!:|||!!: ..!! |||: IleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspL 278695 : ATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATC : 278754 78 : alTyrAsnGlnIleLysPhePheGlyProSerSerPheCysMetMetAlaIleMetLy : 96 !! !!!..:!!||||||.!..!!|||||| !|||||||||! !||||||! !!:|| euAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrIleLy 278755 : TCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAA : 278811 97 : sTyrTyrLeuMetIleLeuHisGluAsnAspIleArgAspCysIleGlnArgIleGlu : 115 |||||||:!!:!:!!:! !!.!! ..! ! ||| !! ! |||:!:.!. !|||... sTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIleArg 278812 : ATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGT : 278868 116 : LeuAspTrpLys<-><-><->AsnIleSerHisAspAspAspLysLysIleMetValG : 132 !||||||... ::: ! ! ...:::::::::::::::|||||| !! ThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMetArgA 278869 : ACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTGAGGG : 278928 133 : luLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysThrPhePheMetTyrAlaVa : 151 !:!..|||!:!.!!||||||...||| !!!! !!.!! !||||||||| spSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyr----- 278929 : ACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTAT----- : 278982 152 : lSerArgSerGlyPheAlaPheTyrTyrValValLeuProThrSerAlaAspLysIle : 170 |||||| !.!|||||| !!.!|||:!!||| !! !|||! :::! -------SerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThr 278983 : -------TCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACG : 279030 171 : GlnAlaAlaAspAlaAsnLeuThrPheIleProLeuAlaCysProPheSerSerLeuI : 190 :!! ! !||| ||| !||| ! ! ! !!! !|||! !|||.!!! ! !! !: GluIleIleAsp---AsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyL 279031 : GAGATCATCGAC---AATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCC : 279087 191 : leIleAspThrArgTyrSerProThrAsnGluIleValPheLeuLeuGlnValValAl : 209 !!:!!||| !!||| !||||||:!! !||||||||| !!!:!!||| !:!!|| euLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAl 279088 : TCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGC : 279144 210 : aGlyAlaLeuIleHisSerIleAlaSerAlaAlaCysGlyLeuAlaAlaMetLeuAla : 228 |!.! !:!!:!!:!!|||:!!.!! !!.!||||||.!!||| !|||:!!!!!!.! aAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheVal 279145 : CGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTC : 279201 229 : ValHisAlaCysGlyGlnMetGluValLeuMetAsnTrpLeuLysHisLeuValAspG : 248 :!!|||!.!|||||||||.!...!:!!|||:!!!.. !||| ! ! |||:!!|||| MetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspG 279202 : ATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACG : 279261 249 : lyArgSerAspMetGly<-><->AspThrValAspAlaArgIleAlaSerValValSe : 265 || !!.!! ! ! ! ..!||| !!!: !|||:!:!.!..!:!!:!!.. lyValLysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGl 279262 : GAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGA : 279318 266 : rGlnHisValArgIleLeuLysTyr{Le} >>>> Target Intron 1 >>>> : 274 !!!.|||:!!!:!|||||| !!! { } 651 bp uHisHisLeuLysIleLeuGly***{Ar}+- +- 279319 : GCATCATCTGAAGATACTGGGGTAA{AG}gg.........................at : 279996 275 : {u}ThrArgThrGluGlyAlaLeuGlnLeuIleSerPheValGluPheLeuGlyCysT : 293 {!} ! !|||.!.||| ! !.!. !:!!!!!!:! !!.!..!!:!! !...! {g}LeuPheThrHisGlyAsnArgAspAspLeuCysTyrPheHisIleValMetAlaL 279997 : {A}TTATTTACTCACGGTAACAGAGACGACTTATGTTATTTCCATATTGTAATGGCAA : 280053 294 : hrLeuAspIleCysLeuLeuGlyTyrTyrValIleMetGluSerLysSerAsnAspIl : 312 !:!!! .!! !:!!! !..!! ! |||.!! !|||!!!:!!..!|||||| ysIleAlaPheValMetTyrSerLeuSerValPhe***GluTrpGluGlnAsnAspAl 280054 : AAATTGCATTCGTCATGTACTCGTTGTCAGTTTTCTAGGAATGGGAGCAAAATGACGC : 280110 313 : eThrSerThrValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIle : 331 !! !.!!||| !!||||||:!!!!:!!!|||||||||||||||||||||:!!|||||| aIleGlyThrPheThrTyrLeuMetPheLeuIleSerLeuThrPheAsnValPheIle 280111 : TATAGGAACGTTCACGTATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATA : 280167 332 : PheCysTyrIleGlyGluLeuValAlaGluGln >>>> Target Intron 2 >> : 343 .!!|||||||||||||||:!!:!!:!!|||||| 74 bp LeuCysTyrIleGlyGluIleLeuSerGluGln++ 280168 : CTCTGTTACATCGGTGAAATTCTCTCCGAACaggt....................... : 280205 344 : >> CysArgLysIleGlyGluMetThrTyrMetIleGluTrpTyrArgLeuProGly : 360 ||| !|||:!!|||! ! ||||||||||||!!:|||||||||||||||||| ++CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGly 280206 : ..agTGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGG : 280328 361 : AsnLysLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleThrLeuT : 380 !!.||| !! ! !!! :!!||||||.!!|||:!!|||||||||||||||! !|||| LysLysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuT 280329 : AAGAAAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAA : 280388 381 : hrAlaGlyAsnMetValGluLeuSerIleGluThrPheThrAsn >>>> Target : 395 ||||||||!!.!!::!!!!:||||||:!!...!:!||| !!:! 71 hrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSer++ 280389 : CAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt............ : 280435 396 : Intron 3 >>>> ValValLysThrAlaPheAlaPheLeuAsnValLeuArgThrL : 409 bp |||:!!|||||||||||||||!:!|||!:!:!!|||||||||| ++ValLeuLysThrAlaPheAlaTyrLeuSerLeuLeuArgThrL 280436 : .............agGTGTTAAAAACGGCATTCGCATATCTGAGCTTATTACGTACGC : 280546 410 : euThr : 410 ||||| euThr 280547 : TTACC : 280551 vulgar: gi|805765827|ref|XP_012135096.1| 1 410 . KQ414889.1 278522 280551 + 558 M 37 111 G 0 3 M 35 105 G 0 3 M 46 138 G 0 9 M 30 90 G 4 0 M 21 63 G 1 0 M 78 234 G 0 6 M 20 60 S 0 2 5 0 2 I 0 647 3 0 2 S 1 1 M 68 204 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278523 280551 558 + . gene_id 8 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278523 279346 . + . KQ414889.1 exonerate:protein2genome:local exon 278523 279346 . + . insertions 21 ; deletions 5 KQ414889.1 exonerate:protein2genome:local splice5 279347 279348 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local intron 279347 279997 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279996 279997 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 279998 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 279998 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280551 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278523 280551 558 + . alignment_id 8 ; Query gi|805765827|ref|XP_012135096.1| ; Align 278523 2 111 ; Align 278637 39 105 ; Align 278745 74 138 ; Align 278892 120 90 ; Align 278982 154 63 ; Align 279045 176 234 ; Align 279285 254 60 ; Align 279999 275 204 ; Align 280277 343 156 ; Align 280504 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 538 Query range: 12 -> 346 Target range: 259751 -> 261856 13 : AspTyrGluLysAsnValAsnLeuSerThrGlnTrpCysArgTrpIleLeuLysProI : 32 ..!!:! !..:!! !:!!! !||| !|||!:: !||||||.!!|||||||||| SerPheThrSerHisSerAspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProI 259752 : AGTTTCACTAGCCACAGTGACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGA : 259809 33 : leGlyValTrp<->ProThrSerAspValThrGlyThrGlnLysCysMetTyrArgLe : 50 |||||!.!||| |||:!!|||..!..!||| !! !:!!||| !!!:! ! !:! leGlyAlaTrpProProSerSerSerThrThrArgLeuGluLysIleIleSerValIl 259810 : TAGGCGCTTGGCCACCTTCATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTAT : 259866 51 : uIleAsnValMetCysTyrSerPheLeuSerPheLeuCysValProGlyIleLeuTyr : 69 !:!:! ! !!!!:||||||||| !:!! ! !! ! :!!||| !!:!!|||:!! eLeuIlePheIleCysTyrSerThrIleLeuValThrLeuIleProCysValLeuHis 259867 : CCTGATCTTTATCTGCTACAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCAC : 259923 70 : ValIleLeuGluValGluAspValTyrAsnGlnIleLysPhePheGlyProSerSerP : 89 :!!:!!|||||| !|||..!:!!|||! :!!! ||| ! .!!|||||| !!!! MetLeuLeuGluLysGluSerLeuTyrMetLysThrLysValLeuGlyProLeuThrH 259924 : ATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCC : 259983 90 : heCysMetMetAlaIleMetLysTyrTyrLeuMetIleLeuHisGluAsnAspIleAr : 108 !!! .!.:!:!.! !!!:!!.||| !:!!:!:|||...! !..||||||! isTrpPheValGlyCysIleAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLe 259984 : ACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACT : 260040 109 : gAspCysIleGlnArgIleGluLeuAspTrpLysAsnIleSerHisAspAspAspLys : 127 !..!|||:!::!!!.!:!:||| !||||||!:!! !|||!!!...!!: ! |||:!! uSerCysValGluHisValGluAsnAspTrpArgIleIleThrArgGluLysAspGln 260041 : TAGCTGCGTGGAACACGTGGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAG : 260097 128 : LysIleMetValGluLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysThrPheP : 147 !!.:!:|||:!!..! ! ||||||||||||||| ! :!! !|||! !|||.!! !| AsnValMetLeuArgTyrAlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaP 260098 : AACGTGATGTTGAGATACGCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTT : 260157 148 : heMetTyrAlaValSerArgSerGlyPheAlaPheTyrTyrValValLeuProThrSe : 166 ||:!! !:!.!!||| !! !! !!:!! !:!!||| ! ! !|| heVal------------GlnGlyGlyValLeuCysPheCysLeuValThrValLeuSe 260158 : TCGTG------------CAGGGCGGAGTTCTGTGCTTCTGTTTGGTCACGGTGTTGAG : 260202 167 : rAlaAspLysIleGlnAlaAlaAspAlaAsnLeuThrPheIleProLeuAlaCysPro : 185 |.!!!!: !||||||!.!!.!:!!! !!.. !! ! !! !! !||| !!||| !! rThrGluValIleGlnValGlyAsnGluThrArgIleValHisLeuLeuProCysAla 260203 : TACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTGCCGTGCGCG : 260259 186 : PheSerSerLeuIleIleAspThrArgTyrSerProThrAsnGluIleValPheLeuL : 205 ! ! !!.! !:!:|||:!!..!!.! !!||||||! !||||||||||||.!!:!!: ValTyrLysGluLeuIleAsnValAsnAspSerProMetAsnGluIleValLeuValV 260260 : GTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGATTGTTCTCGTCG : 260319 206 : euGlnValValAlaGlyAlaLeuIleHisSerIleAlaSerAlaAlaCysGlyLeuAl : 224 !!||| !!|||:!!||| !:!!:!::!!|||! !.!! !!.! !! !.!!||||| alGlnPheValSerGlyPheIleValAsnSerSerThrValGlyIlePheSerLeuAl 260320 : TGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTTCAGTCTCGC : 260376 225 : aAlaMetLeuAlaValHisAlaCysGlyGlnMetGluValLeuMetAsnTrpLeuLys : 243 ||||:!:|||.!!!.!|||||||||||||||:!!.!.|||||||||.!.|||:!!! ! aAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMetGluTrpIleThr 260377 : GGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAATGGATCACG : 260433 244 : HisLeuValAsp<->GlyArgSerAspMetGlyAspThrValAspAlaArgIleAlaS : 262 .!.!!!|||||| ..!|||!:! ! ! ! ! .!! ! ! !..!|||!.! GluPheValAspGluSerArgAsnArgLysLysLysAlaProPheLysGluIleGlyV 260434 : GAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTCCTTTCAAGGAGATCGGAG : 260493 263 : erValValSerGlnHisValArgIleLeu{Ly} >>>> Target Intron 1 >> : 272 !:!!|||..!!!.|||:!!||| !|||{! } 257 bp alIleValGluHisHisLeuArgAlaLeu{Th}++ 260494 : TGATTGTCGAACATCATTTGAGAGCACTC{AC}gt....................... : 260527 273 : >> {s}TyrLeuThrArgThrGluGlyAlaLeuGlnLeuIleSerPheValGluPhe : 289 { }!:!:!!:!!|||! !|||! !!.!:!!.!.! !|||!!!|||:!!|||!!. ++{r}PheIleSerArgIleGluAspValMetAsnArgIleCysPheLeuGluLeu 260528 : ..ag{C}TTCATATCGCGTATCGAGGATGTGATGAACCGGATATGCTTCCTGGAGTTG : 260831 290 : LeuGlyCysThrLeuAspIleCysLeuLeuGlyTyrTyrValIleMet >>>> Tar : 306 !!! !!|||||||||||||||||||||||||||||||||:!!:!!||| PheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeuMet++ 260832 : TTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATATTCTTATGgt........ : 260884 307 : get Intron 2 >>>> GluSerLysSerAsnAspIleThrSerThrValThrTyr : 318 852 bp |||!!! ..!.!.|||||| !!:! ! !|||||| ++GluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyr 260885 : .................agGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTAT : 261770 319 : IleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluL : 338 .!!!!::!!||||||:!!:!! !||||||:!!||||||.!!|||||||||||||||: PheMetMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluI 261771 : TTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAA : 261830 339 : euValAlaGluGlnCysArgLysIle : 346 !!:!!.!!|||||| !:! ! :!: leLeuThrGluGlnValGlnHisLeu 261831 : TACTAACGGAACAGGTACAACATTTG : 261856 vulgar: gi|805765827|ref|XP_012135096.1| 12 346 . KQ414889.1 259751 261856 + 538 M 23 69 G 0 3 M 113 339 G 4 0 M 95 285 G 0 3 M 24 72 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259752 261856 538 + . gene_id 9 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259752 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259752 260524 . + . insertions 6 ; deletions 4 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261856 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261856 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259752 261856 538 + . alignment_id 9 ; Query gi|805765827|ref|XP_012135096.1| ; Align 259752 13 69 ; Align 259824 36 339 ; Align 260163 153 285 ; Align 260451 248 72 ; Align 260783 273 99 ; Align 261734 306 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 427 Query range: 18 -> 304 Target range: 266634 -> 267555 19 : AsnLeuSerThrGlnTrpCysArgTrpIleLeuLysProIleGlyValTrpProThrS : 38 :!!! !||| !|||! ! !||||||.!!|||||||||||||||!.!|||||| !!! AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProL 266635 : GATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGT : 266692 39 : erAspValThrGly<->ThrGlnLysCysMetTyrArgLeuIleAsnValMetCysTy : 56 !...:!!|||..! !:!!::! !:!:! ! ! !:!:! !|||!!:||||| euSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266693 : TGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 57 : rSerPheLeuSerPheLeuCysValProGlyIleLeuTyrValIleLeuGluValGlu : 75 |!!!! !:!! !||| ! :!!||| !!:!:!!!:!!:!!:!!||||||! !||| rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 76 : AspValTyrAsnGlnIleLysPhePheGlyProSerSerPheCysMetMetAlaIleM : 95 ..!:!! !!..:!!:!:||| ! ||||||||| !||| !!! .!.:!:!.! !! SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 96 : etLysTyrTyrLeuMetIleLeuHisGluAsnAspIleArgAspCysIleGlnArgIl : 114 !:!!.||| ! !:!!:!:|||!.!...!!.!!:||||||! !|||:!!:!!!.!!! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 115 : eGluLeuAspTrpLysAsnIleSerHisAspAspAspLysLysIleMetValGluLys : 133 ::!! !||||||!:!! !:!:!!!... !!:||||||:!!:!:|||:!!:!!!!. tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 134 : AlaLysPheGlyArgGlnLeuIleAlaLeuCysThrPhePheMetTyrAlaValSerA : 153 |||!:!.!!|||||| ! :!! ! !!!!|||.!! |||||| ! AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMet------------G 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATG------------C : 267028 154 : rgSerGlyPheAlaPheTyrTyrValValLeuProThrSerAlaAspLysIleGlnAl : 172 :!!!!||| !! ! !|||! !|||:!! ! !! !!!! !.!.! :!::!!!. lnCysGlyValLeuGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluVa 267029 : AATGCGGTGTTCTCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGT : 267085 173 : aAlaAspAlaAsnLeuThrPheIleProLeuAlaCysProPheSerSerLeuIleIle : 191 !!.!:!!! !!.! !! ! ! !! !||| !!||| !! !!! !!.! !!!:||| lGlyAsnGluThrArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIle 267086 : CGGTAACGAGACTAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATC : 267142 192 : AspThrArgTyrSerProThrAsnGluIleValPheLeuLeuGlnValValAlaGlyA : 211 ! ..! ! !|||||||||||||||||||||.!!:!!! !||| !!|||:!!||| AlaValAspThrSerProThrAsnGluIleValLeuValSerGlnPheValSerGlyP 267143 : GCAGTTGATACCAGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGAT : 267202 212 : laLeuIleHisSerIleAlaSerAlaAlaCysGlyLeuAlaAlaMetLeuAlaValHi : 230 !:!!:!::!!|||! !!.! !!.!|||! !.!!|||||||||:!!!!!|||!.!|| heIleValAsnSerSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHi 267203 : TCATCGTGAATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCA : 267259 231 : sAlaCysGlyGlnMetGluValLeuMetAsnTrpLeuLysHisLeuValAspGlyArg : 249 |||||||||||||:!!...|||||||||! |||:!!|||.!.!!!|||:!! !! ! sAlaCysGlyGlnLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSer 267260 : CGCGTGCGGACAGCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCC : 267316 250 : SerAspMetGlyAspThrVal<->AspAlaArgIleAlaSerValValSerGlnHisV : 268 !!!|||! ..! ! !.!||| !! !!:!|||!.! !||||||..!!!.|||: ArgAspSerAsnLysAsnValCysPheAspLysIleGlyValValValGluHisHisL 267317 : AGAGATAGCAATAAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATC : 267376 269 : alArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}TyrLeuThrAr : 276 !!|||:!!|||{!.} 69 bp {.}!:!:!!.!!|| euArgValLeu{Se}++ ++{r}PheIleAlaAr 267377 : TGAGAGTTTTG{AG}gt.........................ag{C}TTCATAGCACG : 267469 277 : gThrGluGlyAlaLeuGlnLeuIleSerPheValGluPheLeuGlyCysThrLeuAsp : 295 |! !|||.!!!.!:!!... !|||!!!|||:!!|||!!.!!! !||||||:!!||| gIleGluSerValMetSerGluIleCysPheMetGluLeuPheLysCysThrMetAsp 267470 : TATCGAAAGTGTAATGAGCGAAATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGAT : 267526 296 : IleCysLeuLeuGlyTyrTyrValIle : 304 ||||||:!!|||.!!||||||:!!:!! IleCysValLeuSerTyrTyrIleLeu 267527 : ATATGCGTGCTTAGCTATTATATCCTT : 267555 vulgar: gi|805765827|ref|XP_012135096.1| 18 304 . KQ414889.1 266634 267555 + 427 M 24 72 G 0 3 M 106 318 G 4 0 M 104 312 G 0 3 M 15 45 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266635 267555 427 + . gene_id 10 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266635 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266635 267389 . + . insertions 6 ; deletions 4 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267555 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266635 267555 427 + . alignment_id 10 ; Query gi|805765827|ref|XP_012135096.1| ; Align 266635 19 72 ; Align 266710 43 318 ; Align 267028 153 312 ; Align 267343 257 45 ; Align 267460 273 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 425 Query range: 12 -> 304 Target range: 274362 -> 275306 13 : AspTyrGluLysAsnValAsnLeuSerThrGlnTrpCysArgTrpIleLeuLysProI : 32 :!!!:!!!:!.. ! !:!!! !||| !|||! ! !||||||.!!|||||||||| AsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 274363 : AATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTA : 274420 33 : leGlyValTrpPro<->ThrSerAspValThrGlyThrGlnLysCysMetTyrArgLe : 50 |||||!.!|||||| .!!||| !..!||| ! !:!!::! !:!:! !.!|| leGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLeuSerHisLe 274421 : TAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCt : 274477 51 : uIleAsnValMetCysTyrSerPheLeuSerPheLeuCysValProGlyIleLeuTyr : 69 |::: :::||||||!!!|||:!! !! ! ! !:!!|||.!!|||!!!:!! uLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIlePheHis 274478 : tttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCAC : 274534 70 : ValIleLeuGluValGluAspValTyrAsnGlnIleLysPhePheGlyProSerSerP : 89 :!!||||||! !! !|||..!:!!:!! :!!:!:|||!!..!!|||||| !.!! IleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyH 274535 : ATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTC : 274594 90 : heCysMetMetAlaIleMetLysTyrTyrLeuMetIleLeuHisGluAsnAspIleAr : 108 !!! .!.!!:!.! !!!:!!.||| ! !:!!:!:|||!.!...!!.!!:||||| isTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleAr 274595 : ACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACG : 274651 109 : gAspCysIleGlnArgIleGluLeuAspTrpLysAsnIleSerHisAspAspAspLys : 127 |! !|||:!::!!!.!!!::!! !||||||!:!! !:!:!!!... !!:|||:!! gGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAspGln 274652 : CGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAA : 274708 128 : LysIleMetValGluLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysThrPheP : 147 :!!:!:|||:!!:!!!!.||||||.!!|||||| ! :!! !!!!|||.!! | GlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaP 274709 : CAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGT : 274768 148 : heMetTyrAlaValSerArgSerGlyPheAlaPheTyrTyrValValLeuProThrSe : 166 ||||| !:!!!!||| !! !! !|||! !|||:!! ! !! !!! heMet------------GlnCysGlyValLeuCysTyrCysValIleThrAlaPheTh 274769 : TCATG------------CAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCAC : 274813 167 : rAlaAspLysIleGlnAlaAlaAspAlaAsnLeuThrPheIleProLeuAlaCysPro : 185 ! !.!.! :!!|||!.!!.!:!!! !!.! !||| ! ! !||| !!||| ! rMetGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLys 274814 : TATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAA : 274870 186 : PheSerSerLeuIleIleAspThrArgTyrSerProThrAsnGluIleValPheLeuL : 205 !! !!.! !|||:!!! ..! ! |||||||||||||||||||||.!! !! AlaTyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValLeuAlaS 274871 : GCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCT : 274930 206 : euGlnValValAlaGlyAlaLeuIleHisSerIleAlaSerAlaAlaCysGlyLeuAl : 224 !||| !!|||:!!||| !:!!:!::!!|||! !||| !!.!|||! !.!!||||| erGlnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAl 274931 : CGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGC : 274987 225 : aAlaMetLeuAlaValHisAlaCysGlyGlnMetGluValLeuMetAsnTrpLeuLys : 243 ||||:!!!!!|||!.!||||||! !||||||:!!...|||||||||! |||:!!! aAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThr 274988 : CGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACC : 275044 244 : HisLeuValAspGlyArgSerAspMetGlyAspThrVal<->AspAlaArgIleAlaS : 262 .!.!!!|||:!! ! !!!!|||...... ...||| ::!..!|||!.! GluPheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyV 275045 : GAGTTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCG : 275104 263 : erValValSerGlnHisValArgIleLeu{Ly} >>>> Target Intron 1 >> : 272 !||||||..!!!.|||:!!|||:!!|||{!.} 74 bp alValValGluHisHisLeuArgValLeu{Se}++ 275105 : TGGTTGTCGAACATCATCTGAGGGTACTC{AG}gt....................... : 275138 273 : >> {s}TyrLeuThrArgThrGluGlyAlaLeuGlnLeuIleSerPheValGluPhe : 289 {.}!:!:!!.!!|||! !|||! !!.!:!!.!.! !|||!!!|||:!!|||!!. ++{r}PheIleAlaArgIleGluAspValMetAsnArgIleCysPheMetGluLeu 275139 : ..ag{T}TTCATAGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAATTG : 275259 290 : LeuGlyCysThrLeuAspIleCysLeuLeuGlyTyrTyrValIle : 304 !!! !||||||||||||!!:|||:!!||||||||||||:!!:!! PheLysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleLeu 275260 : TTCAAGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTCTC : 275306 vulgar: gi|805765827|ref|XP_012135096.1| 12 304 . KQ414889.1 274362 275306 + 425 M 24 72 G 0 3 M 112 336 G 4 0 M 104 312 G 0 3 M 15 45 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274363 275306 425 + . gene_id 11 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274363 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274363 275135 . + . insertions 6 ; deletions 4 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274363 275306 425 + . alignment_id 11 ; Query gi|805765827|ref|XP_012135096.1| ; Align 274363 13 72 ; Align 274438 37 336 ; Align 274774 153 312 ; Align 275089 257 45 ; Align 275211 273 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 401 Query range: 15 -> 275 Target range: 232447 -> 233218 16 : LysAsnValAsnLeuSerThrGlnTrpCysArgTrpIleLeuLysProIleGlyValT : 35 ::!:!! !.!.! !|||! !||| ! !||||||.!!|||! !|||!!:|||!.!| ArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaT 232448 : CGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCAT : 232505 36 : rpPro<->ThrSerAspValThrGlyThrGlnLysCysMetTyrArgLeuIleAsnVa : 53 ||||| ..!!!!!!:..!:!! !!.!!|||:!! :!: !:!|||:!:!..:! rpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLe 232506 : GGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACT : 232562 54 : lMetCysTyrSerPheLeuSerPheLeuCysValProGlyIleLeuTyrValIleLeu : 72 !! |||:!!|||.!.:!!! !! !! ! !|||||| !!||||||!:!:!!:!:!!! uThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPhe 232563 : CACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTC : 232619 73 : GluValGluAspValTyrAsnGlnIleLysPhePheGlyProSerSerPheCysMetM : 92 |||! ! !..!:!! ! .!.::!!!:|||! !.!!||||||! !||| !! !:!!| GluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuM 232620 : GAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGA : 232679 93 : etAlaIleMetLysTyrTyrLeuMetIleLeuHisGluAsnAspIleArgAspCysIl : 111 ||!.! !:!!!!.|||! !! !:!!:!: ! ! ! !|||||||||! ! !!|||:! etGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysVa 232680 : TGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGT : 232736 112 : eGlnArgIleGluLeuAspTrpLysAsnIleSerHisAspAspAspLysLysIleMet : 130 ::!!!:!:!::!!! !||||||::!|||:!!!.! ! !! ! !!::: ! :!:||| lGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMet 232737 : GGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATG : 232793 131 : ValGluLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysThrPhePheMetTyrA : 150 :!!:!!!!.||||||.!!||||||..!:!! !..!:!!..!.!!|||! !|||:!! LeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHis- 232794 : TTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCAC- : 232853 151 : laValSerArgSerGlyPheAlaPheTyrTyrValValLeuProThrSerAlaAspLy : 169 !!!||| !!!.!! ! !! ! :!!||| ! ! ! !! !..!! -----------ThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerTh 232854 : -----------ACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCAC : 232898 170 : sIleGlnAlaAlaAspAlaAsnLeuThrPheIleProLeuAlaCysProPheSerSer : 188 !.!! ! !.!!.!:!!! !!:!! !:!!.!. !|||||| !!||| !!|||! !!!! rPheTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThr 232899 : GTTCTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACG : 232955 189 : LeuIleIleAspThrArgTyrSerProThrAsnGluIleValPheLeuLeuGlnValV : 208 !:!:!!:|||||||||!:!||||||||||||||||||:!!|||:!!|||||| !: LysLeuMetAspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysL 232956 : AAGCTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTC : 233015 209 : alAlaGlyAlaLeuIleHisSerIleAlaSerAlaAlaCysGlyLeuAlaAlaMetLe : 227 !!:!!||| !:!!:!::!!|||:!!.!! !!.!||||||||||||!.!|||:!:|| euSerGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLe 233016 : TCTCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCT : 233072 228 : uAlaValHisAlaCysGlyGlnMetGluValLeuMetAsnTrpLeuLysHisLeuVal : 246 ||||:!!|||||||||||||||:!!.!.|||:!!|||::: ||| ! !!|||||| uAlaMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuVal 233073 : AGCGATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTG : 233129 247 : AspGlyArgSerAspMetGlyAspThrValAspAlaArgIleAlaSerValValSerG : 266 |||!.!!:!.!!.!. !! ! ..!!.!.!. !!:!:!!!.!! !:!!|||..!! AspAlaLysGlyGlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluH 233130 : GACGCGAAAGGGCAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGC : 233189 267 : lnHisValArgIleLeuLysTyrLeuThr : 275 !.|||:!!|||! !|||!:!||||||:!! isHisLeuArgThrLeuArgTyrLeuSer 233190 : ATCATTTGCGTACATTAAGGTATTTGTCT : 233218 vulgar: gi|805765827|ref|XP_012135096.1| 15 275 . KQ414889.1 232447 233218 + 401 M 21 63 G 0 3 M 113 339 G 4 0 M 122 366 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232448 233218 401 + . gene_id 12 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232448 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232448 233218 . + . insertions 3 ; deletions 4 KQ414889.1 exonerate:protein2genome:local similarity 232448 233218 401 + . alignment_id 12 ; Query gi|805765827|ref|XP_012135096.1| ; Align 232448 16 63 ; Align 232514 37 339 ; Align 232853 154 366 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 350 Query range: 14 -> 395 Target range: 204221 -> 206401 15 : GluLysAsnValAsnLeuSerThrGlnTrpCysArgTrpIleLeuLysProIleGlyV : 34 |||:!!:!!:!!!..! !:!!|||!::!:: !:! !|||||| ! !:!!|||! GluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyA 204222 : GAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTG : 204279 35 : alTrpProThrSer<->AspValThrGlyThrGlnLysCysMetTyrArgLeuIleAs : 52 .!||||||! ! !! :!! !:!! ! ! !!:! :!: |||:!! !:! laTrpProIleProValAsnSerSerProPheThrArgLeuValArgArgIleGluHi 204280 : CGTGGCCGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACA : 204336 53 : nValMetCysTyrSerPheLeuSerPheLeuCysValProGlyIleLeuTyrValIle : 71 !|||:!: !||| ...... ...:!! !|||||||||:!!|||||||||.!! sValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPhe 204337 : CGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTC : 204393 72 : LeuGluValGluAspValTyrAsnGlnIleLysPhePheGlyProSerSerPheCysM : 91 |||:!!! !:!!:!!! ! ! ! !!:::!:|||.!!.!!||||||! ! ! !|||! LeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysS 204394 : CTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCA : 204453 92 : etMetAlaIleMetLysTyrTyrLeuMetIleLeuHisGluAsnAspIleArgAspCy : 110 !!: !.!!.!.||||||! !:!!!!::!!! !!.. :!! ! |||!:! ! ! erIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSe 204454 : GCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAG : 204510 111 : sIleGlnArgIleGluLeuAspTrpLysAsnIleSerHisAspAspAspLysLysIle : 129 !:!:.!.! !|||..!! !||||||! !.!. !!!! |||!!::!!::! !||| rLeuAsnThrIleArgArgAspTrpIleGluAlaThr---AspGluAsnArgLeuIle 204511 : TTTGAACACCATCAGACGCGACTGGATAGAGGCTACG---GATGAAAATCGGTTGATT : 204564 130 : MetValGluLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysThrPhePheMetT : 149 .!. !..!|||||||||.!!||||||::!:!!:!: !:!!....!! ! !|||| PheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetT 204565 : TTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGT : 204624 150 : yrAlaValSerArgSerGlyPheAlaPheTyrTyrValValLeuProThrSerAlaAs : 168 || .!!||| ! !! !||| ..!:!!|||||| !! ! !! yr------------GlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGl 204625 : AC------------GGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGG : 204669 169 : pLysIleGlnAlaAlaAspAlaAsnLeuThrPheIleProLeuAlaCysProPheSer : 187 ! !||| !.!! !!||| |||:!!|||.!.! |||||| !!|||||| !! yThrIleValThrProAsp---AsnValThrIleArgProLeuProCysProValTyr 204670 : AACGATCGTAACACCTGAT---AACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtac : 204723 188 : SerLeuIleIleAspThrArgTyrSerProThrAsnGluIleValPheLeuLeuGlnV : 207 :::......::: !!:! !||||||!.! !!||||||||||||:!!||||||: PheValPhePheAsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnI 204724 : tttgttttctttaacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAA : 204783 208 : alValAlaGlyAlaLeuIleHisSerIleAlaSerAlaAlaCysGlyLeuAlaAlaMe : 226 !!:!!|||||| !:!!! !:!!:!!:!! !|||!.!.!!||||||:!!..!|||:! leMetAlaGlyPheValThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLe 204784 : TTATGGCTGGTTTTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCT : 204840 227 : tLeuAlaValHisAlaCysGlyGlnMetGluValLeuMetAsnTrpLeuLysHisLeu : 245 !!!!!.!:!!|||||||||.!!..!:!!..!:!!|||:!!||| !:!!!!. ||| uPheValLeuHisAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeu 204841 : GTTCGTTCTCCACGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTT : 204897 246 : ValAspGlyArgSerAspMetGlyAspThrValAspAlaArgIleAlaSerValValS : 265 |||||| ! !..! ! ! ! !||| !! !!:!||||||..!:!!|||. ValAspLysAlaAspMetThrGluThrLeuValHisArgLysIleAlaAspIleValG 204898 : GTGGATAAGGCGGACATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTGTTG : 204957 266 : erGlnHisValArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}Ty : 273 .! ! !!...!!:!||| !{!:} 1047 bp {!} ! luTyrGlnThrLysIleLys{Ar}++ ++{g}As 204958 : AATATCAGACGAAGATAAAG{AG}gt.........................ag{A}AA : 206028 274 : rLeuThrArgThrGluGlyAlaLeuGlnLeuIleSerPheValGluPheLeuGlyCys : 292 ! ! !|||:!! ! ! ! ! !! !! !.!. !:!! ||| !||| nThrGlyArgSerCysPheArgAsnGlyArgThrIleIleGlnGlnArgLeu***Cys 206029 : TACAGGACGATCGTGTTTTAGGAATGGGAGAACAATAATACAACAGCGGTTATAGTGT : 206085 293 : ThrLeuAspIleCysLeuLeuGlyTyrTyrValIleMetGluSerLysSerAsnAspI : 312 |||! ! ! ! ! ! !|||! !:!!! !!.!.!!:!: ! ! ! !!!:::! !! ThrSerArgCysArgTyrLeuValHisSerAlaPheLeuTyrTyrAlaThrSerGlyS 206086 : ACATCACGTTGCAGATATCTTGTACATTCTGCGTTTTTATACTATGCTACATCGGGCA : 206145 313 : leThrSerThrValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIl : 331 ! !! !:!!:!!! !! !:!:||| !! ! !!!! !|||!:: ::::::|| erPheLeuSerIleLysCysValIleThrTyrGln***SerThrTrpIleLeuTrpIl 206146 : GCTTCTTATCGATCAAGTGCGTGATTACGTATCAATGAAGTACGTGGattctttggat : 206202 332 : ePheCysTyrIleGlyGluLeuValAlaGlu-----GlnCysArgLysIleGlyGluM : 349 |||| !:!! !..! !:!!.!! #####||| !!.! :!:||| !! ePheLeuThrLeuThrArgSerIleThrIle#####GlnAsnHisValValGlyLeuT 206203 : ttttttaaCTCTTACTAGAAGTATTACCATTTTTAACAGAACCACGTCGTGGGATTGA : 206261 350 : etThrTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCysCysValLe : 368 :!!! !! !:!:.!.|||||||||||||||..!!.. ! !! !! ! :!!|| hrSerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLe 206262 : CATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACT : 206318 369 : uIleIleAlaMetSerAsnSerSerIleThrLeuThrAlaGlyAsnMetValGluLeu : 387 |||||||||||||||||||! ! !!|||! !||||||||||||!!.||| !!|||:!! uIleIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMet 206319 : GATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATG : 206375 388 : SerIleGluThrPheThrAsnVal : 395 |||:!!! !:!||||||:!!||| SerLeuAlaSerPheThrAspVal 206376 : TCTTTAGCTAGTTTCACCGATGTA : 206401 vulgar: gi|805765827|ref|XP_012135096.1| 14 395 . KQ414889.1 204221 206401 + 350 M 24 72 G 0 3 M 84 252 G 1 0 M 26 78 G 4 0 M 21 63 G 1 0 M 96 288 S 0 2 5 0 2 I 0 1043 3 0 2 S 1 1 M 69 207 F 0 5 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204222 206401 350 + . gene_id 13 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 204222 204979 . + . KQ414889.1 exonerate:protein2genome:local exon 204222 204979 . + . insertions 3 ; deletions 6 KQ414889.1 exonerate:protein2genome:local splice5 204980 204981 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 204980 206026 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206025 206026 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206027 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206027 206401 . + . insertions 0 ; deletions 0 ; frameshifts 5 KQ414889.1 exonerate:protein2genome:local similarity 204222 206401 350 + . alignment_id 13 ; Query gi|805765827|ref|XP_012135096.1| ; Align 204222 15 72 ; Align 204297 39 252 ; Align 204549 124 78 ; Align 204627 154 63 ; Align 204690 176 288 ; Align 206028 273 207 ; Align 206240 342 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 306 Query range: 0 -> 272 Target range: 289678 -> 290482 1 : MetGlnLysThrSerValHisLysLysThrIleAspAspTyrGluLysAsnValAsnL : 20 |||!:!..! !||| ! !!::: !:!!! !||| !||||||! !:!!:!!..!! MetArgSerPheSerSerAspArgProSerAsnAspArgTyrGluThrAspIleArgT 289679 : ATGCGATCGTTCAGCAGCGATCGTCCGTCGAACGATCGTTACGAAACGGACATACGTT : 289736 21 : euSerThrGlnTrpCysArgTrpIleLeuLysProIleGlyValTrpPro<-><->Th : 37 !!!! !:!!! |||!.!|||||||||||||||||||||:!!!::||| yrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrProPheValPh 289737 : ACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCTT : 289793 38 : rSerAspValThrGlyThrGlnLysCysMetTyrArgLeuIleAsnValMetCysTyr : 56 !||| !!.!!:! !! !:!!::! !! !|||:!:! !:!!:!:|||! ! eSerArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLeuValCysCys 289794 : TAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTGC : 289850 57 : SerPheLeuSerPheLeuCysValProGlyIleLeuTyrValIleLeuGluValGluA : 76 |||.!!|||..!|||:!! |||||| !! !! !:!!|||:!!!!!...! !.!.| SerIleLeuGlnPheIleIleValProPheSerHisHisValLeuPheSerAspAsnA 289851 : TCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAACG : 289910 77 : spValTyrAsnGlnIleLysPhePheGlyProSerSerPheCysMetMetAlaIleMe : 95 ||:!! !!!.. :!!||| !.!!||||||! !!!!||||||:!!! .!!.!!.! spMetAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuThrThrPhePh 289911 : ACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCTT : 289967 96 : tLysTyrTyrLeuMetIleLeuHisGluAsnAspIleArgAspCysIleGlnArgIle : 114 .||||||! !! !.!.! !:!! ! ! :::! ||| !! !|||:!::!!!.!||| eLysTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysValLysHisIle 289968 : CAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACATC : 290024 115 : GluLeuAspTrpLysAsnIleSerHisAspAspAspLysLysIleMetValGluLysA : 134 ||| !|||||||||! :!: !! !!!!:||| !!::: ||||||:!!..! ! ! GluArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMetLeuArgTyrV 290025 : GAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATACG : 290084 135 : laLysPheGlyArgGlnLeuIleAlaLeuCysThrPhePheMetTyrAlaValSerAr : 153 .!! !.!..!!|||.!.|||||| !||||||.!!.!!|||:!!||| ! alThrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIle-------- 290085 : TGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATA-------- : 290135 154 : gSerGlyPheAlaPheTyrTyrValValLeuProThrSerAlaAspLysIleGlnAla : 172 ||| ! !! !||| !!..!|||:!!||| !! !:!! ! ||| ::! ----GlyGlyLeuSerTyrAsnThrValIleProLeuPheSerLysLys------Ser 290136 : ----GGTGGTCTGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAAG------AGC : 290180 173 : AlaAspAlaAsnLeuThrPheIleProLeuAlaCysProPheSerSerLeuIleIleA : 192 !.!:!!!.!|||:!!|||.!!! !||||||.!!! !||| !! !..! !.!!.!!| ValAsnGlyAsnValThrIleArgProLeuThrTyrProGlyTyrGluGluPhePheA 290181 : GTGAACGGTAACGTGACTATCAGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCG : 290240 193 : spThrArgTyrSerProThrAsnGluIleValPheLeuLeuGlnValValAlaGlyAl : 211 ||..!!:! ! ||||||.!! !!||||||||||||! !:!!!!. !||| !! ! spValGlnLysSerProAlaTyrGluIleValPheCysMetHisCysValTyrValMe 290241 : ACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCAT : 290297 212 : aLeuIleHisSerIleAlaSerAlaAlaCysGlyLeuAlaAlaMetLeuAlaValHis : 230 !:!!! !:!|||.!!! !||||||! !.!!|||.!!.!!!!:!!!|||..!||| tIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePheAlaThrHis 290298 : GATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACTCAT : 290354 231 : AlaCysGlyGlnMetGluValLeuMetAsnTrpLeuLysHisLeuValAspGlyArgS : 250 .!!|||||||||!!::!!:!!! !! !!.. !!|||:!! !!|||..! ! !! !!! ThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAspLeuThrLysArgGlyM 290355 : ACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTGACAAAGAGAGGGA : 290414 251 : erAspMetGlyAspThrValAspAlaArgIleAlaSerValValSerGlnHisValAr : 269 ! :!!! ! ! !|||..!! !|||:!:||| !||||||||| ||||||.. etLeuLeuGluLysGlyValSerAspArgLeuAlaValValValSerGlyHisValGl 290415 : TGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTGTGAGCGGTCACGTGGA : 290471 270 : gIleLeuLys : 272 !||||||||| uIleLeuLys 290472 : GATCTTGAAG : 290482 vulgar: gi|805765827|ref|XP_012135096.1| 0 272 . KQ414889.1 289678 290482 + 306 M 36 108 G 0 6 M 114 342 G 4 0 M 15 45 G 2 0 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289679 290482 306 + . gene_id 14 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289679 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289679 290482 . + . insertions 6 ; deletions 6 KQ414889.1 exonerate:protein2genome:local similarity 289679 290482 306 + . alignment_id 14 ; Query gi|805765827|ref|XP_012135096.1| ; Align 289679 1 108 ; Align 289793 37 342 ; Align 290135 155 45 ; Align 290180 172 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 304 Query range: 303 -> 395 Target range: 224317 -> 224658 304 : IleMetGluSerLysSerAsnAspIleThrSerThrValThrTyrIleIleLeuLeuI : 323 .!!...||| ...|||::: !!:!!||||||.!!|||||||||.!!|||||||||! PheGlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuM 224318 : TTTCaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCA : 224375 324 : leSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl : 342 !:|||||||||||||||||||||||||||||||||||||||||||||||||||||||| etSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl 224376 : TGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAca : 224432 343 : nCysArg{L} >>>> Target Intron 1 >>>> {ys}IleGlyGluMetThr : 350 | :::{|} 65 bp {||}||||||::!:!!:!! nValLys{L}-+ +-{ys}IleGlyGlnValSer 224433 : ggtgaaa{a}at.........................aa{aa}attggacaAGTGTCG : 224521 351 : TyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCysCysValLeuIleI : 370 |||||||||!!:|||||||||||| !!|||||||||||||||||||||:!!||||||| TyrMetIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleI 224522 : TACATGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAA : 224581 371 : leAlaMetSerAsnSerSerIleThrLeuThrAlaGlyAsnMetValGluLeuSerIl : 389 |||||||||||||||||||||||! !|||||||||||||||||||||||||||!!!:! leAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLe 224582 : TCGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCT : 224638 390 : eGluThrPheThrAsnVal : 395 ! |||||| !:!!||| uThrThrPheGlyAspVal 224639 : AACCACTTTCGGTGACGTA : 224658 vulgar: gi|805765827|ref|XP_012135096.1| 303 395 . KQ414889.1 224317 224658 + 304 M 41 123 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224318 224658 304 + . gene_id 15 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224318 224441 . + . KQ414889.1 exonerate:protein2genome:local exon 224318 224441 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224442 224443 . + . intron_id 1 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local intron 224442 224506 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224505 224506 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 224507 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224507 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224318 224658 304 + . alignment_id 15 ; Query gi|805765827|ref|XP_012135096.1| ; Align 224318 304 123 ; Align 224509 346 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 266 Query range: 18 -> 272 Target range: 236849 -> 237599 19 : AsnLeuSerThrGlnTrpCysArgTrpIleLeuLysProIleGlyValTrpProThrS : 38 :!!! !||| !|||||| !|||||| :!!||| !||||||..!|||||| !! AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnP 236850 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGT : 236907 39 : erAspValThrGlyThrGlnLysCysMetTyrArgLeuIleAsnValMetCysTyrSe : 57 !... :!!..! !:!!!:! !!!:! !|||:!!:!!||||||!!:||||||!! heSer---SerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrTh 236908 : TCTCG---TCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACAC : 236961 58 : rPheLeuSerPheLeuCysValProGlyIleLeuTyrValIleLeuGluValGluAsp : 76 ! :!! !|||! ! :!!||| !! |||:!!:!!!!:|||||| !! ! ! rAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThr 236962 : CGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACT : 237018 77 : ValTyrAsnGlnIleLysPhePheGlyProSerSerPheCysMetMetAlaIleMetL : 96 !!|||!..:!!:!:|||.!..!!||| !!! !||| !!! :!!.!...!|||!!:! PheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleS 237019 : TTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCA : 237078 97 : ysTyrTyrLeuMetIleLeuHisGluAsnAspIleArgAspCysIleGlnArgIleGl : 115 ..||| !:!!:!!:!:|||!.....!!. !|||||| !!! !.!!.!.!.!!!:|| erTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGl 237079 : GTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGA : 237135 116 : uLeuAspTrpLysAsnIleSerHisAspAspAspLysLysIleMetValGluLysAla : 134 | !||||||!:!!..! :::... ::: |||::::::|||:!!:!! ! ||| uThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAla 237136 : GACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCG : 237192 135 : LysPheGlyArgGlnLeuIleAlaLeuCysThrPhePheMetTyrAlaValSerArgS : 154 ||||||.!!||| ! ! !! !||||||.!!|||!!::!! . LysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHis------------G 237193 : AAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACAC------------G : 237240 155 : erGlyPheAlaPheTyrTyrValValLeuProThrSerAlaAspLysIleGlnAlaAl : 173 !!|||.!. ! |||! !|||:!! ! !!:!!!!!.!! :!! !!.!!. lyGlyIleLeuGlyTyrCysValMetThrAlaSerThrThrMetValValValValGl 237241 : GTGGTATACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGG : 237297 174 : aAspAlaAsnLeuThrPheIleProLeuAlaCysProPheSerSerLeuIleIleAsp : 192 !:!! !!.! !! !!!. ! !||| !!! |||.!.! !!.! !:!!:!! yAsnLysThrThrIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuPro 237298 : AAACAAGACTACGATCTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCA : 237354 193 : ThrArgTyrSerProThrAsnGluIleValPheLeuLeuGlnValValAlaGlyAlaL : 212 ..! ! !:! !!! !|||!!:|||||| !!|||! !||| !!:!!:!!||| !: ValAspThrAsnThrMetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheI 237355 : GTCGATACGAATACTATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTA : 237414 213 : euIleHisSerIleAlaSerAlaAlaCysGlyLeuAlaAlaMetLeuAlaValHisAl : 231 !! :!!!:!! !|||! !::!!.! .!!|||.!!::! |||.!! !||||| leAlaAsnAsnSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAl 237415 : TAGCGAACAACAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGC : 237471 232 : aCysGlyGlnMetGluValLeuMetAsnTrpLeuLysHisLeuVal<->AspGlyArg : 249 |! !||||||:!!...|||:!!||| ! !:!!:!! !!!!!||| !!:!.!||| aSerGlyGlnLeuSerValValMetLeuSerIleGluAspPheValSerGluAlaArg 237472 : GTCTGGCCAGTTGAGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGA : 237528 250 : SerAspMetGlyAspThrValAspAlaArgIleAlaSerValValSerGlnHisValA : 269 !! ! !||| ! ! !! !..!||| !!!!!:!!|||..!:!!|||:!!| ArgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluGluHisLeuA 237529 : CGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGA : 237588 270 : rgIleLeuLys : 272 ||:!:|||||| rgValLeuLys 237589 : GAGTGTTGAAG : 237599 vulgar: gi|805765827|ref|XP_012135096.1| 18 272 . KQ414889.1 236849 237599 + 266 M 21 63 G 1 0 M 109 327 G 4 0 M 93 279 G 0 3 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236850 237599 266 + . gene_id 16 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236850 237599 . + . KQ414889.1 exonerate:protein2genome:local exon 236850 237599 . + . insertions 3 ; deletions 5 KQ414889.1 exonerate:protein2genome:local similarity 236850 237599 266 + . alignment_id 16 ; Query gi|805765827|ref|XP_012135096.1| ; Align 236850 19 63 ; Align 236913 41 327 ; Align 237240 154 279 ; Align 237522 247 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 249 Query range: 10 -> 148 Target range: 262822 -> 263239 11 : IleAspAspTyrGluLysAsnValAsnLeuSerThrGlnTrpCysArgTrpIleLeuL : 30 :!:!!:..!!:!! !.. ! !:!!! !||| !||| !||||||:!:|||| LeuGluSerPheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuL 262823 : CTGGAAAGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGA : 262880 31 : ysProIleGlyValTrpProThrSer<->AspValThrGlyThrGlnLysCysMetTy : 48 |||||||||||!.!|||||| !||| ...:!!:!! !!! !:!!::! !!!:!: ysProIleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTr 262881 : AACCGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTG : 262937 49 : rArgLeuIleAsnValMetCysTyrSerPheLeuSerPheLeuCysValProGlyIle : 67 : !|||:!!! !|||:!:||||||!!!.!!:!! !! ! ! !:!!|||..!||| pPheLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIle 262938 : GTTTCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATA : 262994 68 : LeuTyrValIleLeuGluValGluAspValTyrAsnGlnIleLysPhePheGlyProS : 87 |||:!!:!!:!!||||||!.!|||:!! !!:!!! :!!:!::!! !!.!!|||||| LeuHisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProL 262995 : CTTCATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGC : 263054 88 : erSerPheCysMetMetAlaIleMetLysTyrTyrLeuMetIleLeuHisGluAsnAs : 106 !.!! !! .!.:!:!.!!!:!!:!!.||| !! !:!!:!:||||||...!!.|| euGlyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAs 263055 : TCGGTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGA : 263111 107 : pIleArgAspCysIleGlnArgIleGluLeuAspTrpLysAsnIleSerHisAspAsp : 125 ||||!:!! !|||:!:|||!.!:!::!! !|||||| ! !:!:!!!... !!: pIleGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGlu 263112 : TATACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAG : 263168 126 : AspLysLysIleMetValGluLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysT : 145 |||:!!:::||||||:!!:!!!!.||||||!:!|||||| ! :!! !|||! !|||. AspGlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysA 263169 : GATCAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCG : 263228 146 : hrPhePheMet : 148 !!.!!|||||| laIlePheMet 263229 : CGATCTTCATG : 263239 vulgar: gi|805765827|ref|XP_012135096.1| 10 148 . KQ414889.1 262822 263239 + 249 M 28 84 G 0 3 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262823 263239 249 + . gene_id 17 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262823 263239 . + . KQ414889.1 exonerate:protein2genome:local exon 262823 263239 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262823 263239 249 + . alignment_id 17 ; Query gi|805765827|ref|XP_012135096.1| ; Align 262823 11 84 ; Align 262910 39 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 243 Query range: 305 -> 410 Target range: 272836 -> 273302 306 : GluSerLysSerAsnAspIleThrSerThrValThrTyrIleIleLeuLeuIleSerL : 325 |||!!!! ..!:!!|||.!! !||| !..!||||||.!!!!::!!|||||||||: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 326 : euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln >>> : 343 !:|||||||||||||||||| |||||||||||||||:!!:!!.!!|||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 344 : > Target Intron 1 >>>> CysArgLysIleGlyGluMetThrTyrMetIleG : 354 70 bp |||:::||||||||||||:!:..!||||||! . ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 355 : luTrpTyrArgLeuProGlyAsnLysLysLeuCysCysValLeuIleIleAlaMetSe : 373 !.|||||| !|||||||||!!. ! ! ||| ! :!!|||||||||:!!! !! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 374 : rAsnSerSerIleThrLeuThrAlaGlyAsnMetValGluLeuSerIleGluThrPhe : 392 !!:! ! !|||! !:!!|||||||||!..!!:||| :!!|||:!: ! |||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 393 : ThrAsn >>>> Target Intron 2 >>>> ValValLysThrAlaPheAlaPh : 402 !:!! 81 bp |||:!!|||!:!|||||||||!: GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 403 : eLeuAsnValLeuArgThrLeuThr : 410 !||||||:!!|||||| ! !||| rLeuAsnMetLeuArgGlnThrThr 273277 : CTTAAATATGCTACGACAAACGACA : 273302 vulgar: gi|805765827|ref|XP_012135096.1| 305 410 . KQ414889.1 272836 273302 + 243 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273302 243 + . gene_id 18 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273302 243 + . alignment_id 18 ; Query gi|805765827|ref|XP_012135096.1| ; Align 272837 306 111 ; Align 273018 343 156 ; Align 273255 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 237 Query range: 185 -> 272 Target range: 202700 -> 202960 186 : PheSerSerLeuIleIleAspThrArgTyrSerProThrAsnGluIleValPheLeuL : 205 ||||||.!!!!!|||||||||..!||||||||||||..!||||||||| !!|||! !: PheSerGlyPheIleIleAspValArgTyrSerProValAsnGluIlePhePheSerI 202701 : TTCTCAGGATTTATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGA : 202758 206 : euGlnValValAlaGlyAlaLeuIleHisSerIleAlaSerAlaAlaCysGlyLeuAl : 224 !!!:!:!!||||||! ! !|||||||||.!!:!!.!! !!.!|||||| !!|||.! leArgIleValAlaValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuTh 202759 : TTCGAATCGTAGCTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGAC : 202815 225 : aAlaMetLeuAlaValHisAlaCysGlyGlnMetGluValLeuMetAsnTrpLeuLys : 243 !|||:!!!!!|||||||||! !||||||||||||!!:||||||||| !||||||:!! rAlaLeuPheAlaValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGlu 202816 : AGCGTTGTTTGCGGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAA : 202872 244 : HisLeuValAspGlyArgSerAspMetGly--AspThrValAspAlaArgIleAlaSe : 262 ||||||:!!||||||||||||||||||.!!##:!! |||:!!!.!|||!!:!.!!! HisLeuMetAspGlyArgSerAspMetSer##Asn---ValAsnGlyArgMetValTh 202873 : CATTTGATGGATGGTCGTTCGGATATGAGTAAAAT---GTGAATGGCAGAATGGTGAC : 202928 263 : rValValSerGlnHisValArgIleLeuLys : 272 !:!!||||||||||||:!!|||||||||||| rIleValSerGlnHisIleArgIleLeuLys 202929 : CATCGTGAGCCAACACATACGGATACTGAAA : 202960 vulgar: gi|805765827|ref|XP_012135096.1| 185 272 . KQ414889.1 202700 202960 + 237 M 68 204 F 0 2 M 1 3 G 1 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202701 202960 237 + . gene_id 19 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202701 202960 . + . KQ414889.1 exonerate:protein2genome:local exon 202701 202960 . + . insertions 0 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local similarity 202701 202960 237 + . alignment_id 19 ; Query gi|805765827|ref|XP_012135096.1| ; Align 202701 186 204 ; Align 202907 254 3 ; Align 202910 256 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 233 Query range: 12 -> 237 Target range: 194150 -> 194807 13 : AspTyrGluLysAsnValAsnLeuSerThrGlnTrpCysArgTrpIleLeuLysProI : 32 :!!|||:!! !:!!..!.!.! !:!!..!!:! ...!:! !:!!|||! !|||| AsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProI 194151 : AATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGA : 194208 33 : leGlyValTrpProThrSerAspValThrGlyThrGlnLysCysMetTyrArgLeuIl : 51 |||||:!!||||||! !..!||| ! ! !! !::! ! :!!!:! !! !! leGlyIleTrpProArgGluAspSerLeuArgAspArgValArgLeuPheAlaGlnTh 194209 : TCGGTATCTGGCCAAGGGAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAAC : 194265 52 : eAsnValMetCysTyrSerPheLeuSerPheLeuCysValProGlyIleLeuTyrVal : 70 !..!|||:!: !:!:!!!!.:!!!!!|||||| |||||| !:!::!!|||..! rGlyValVal---PheAlaLeuMetCysPheLeuLeuValProHisValIleTyrThr 194266 : TGGCGTGGTC---TTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACT : 194319 71 : IleLeuGluValGluAspValTyrAsnGlnIleLysPhePheGlyProSerSerPheC : 90 !!!!!!: !||||||:!! !.. ! !!:||| ! .!!!.! !!..! !||| TyrPheAspCysGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheS 194320 : TACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCA : 194379 91 : ysMetMetAlaIleMetLysTyrTyrLeuMetIleLeuHisGluAsnAspIleArgAs : 109 !!:!!:!!||||||!!:|||!:!!:: !||||||:!!:!!..!!!.!!:|||||| erLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnArgLysGluIleArgPh 194380 : GTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATT : 194436 110 : pCysIleGlnArgIleGluLeuAspTrpLysAsnIleSerHisAspAspAspLysLys : 128 !|||:!:! !..!!!:||| !.!.!::!:!:!!:!:..! !!!:!!:|||::!:!! eCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCysGluGluAspArgGln 194437 : CTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAG : 194493 129 : IleMetValGluLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysThrPhePheM : 148 :!:|||..!.!. ||||||.!!|||||| !!!! !||| !.!. ValMetThrAsnCysAlaLysIleGlyArg------------PhePheThrThrLeuT 194494 : GTGATGACGAATTGCGCGAAAATCGGCCGA------------TTTTTTACTACCCTGT : 194541 149 : etTyrAlaValSerArgSerGlyPheAlaPheTyrTyrValValLeuProThrSerAl : 167 ! !.!:!!||| !.!!||| ! ! |||:!!:!!:!!|||||| !! !:! yrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSe 194542 : ACTTGGGACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTC : 194598 168 : aAspLysIleGlnAlaAlaAspAlaAsnLeuThrPheIleProLeuAlaCysProPhe : 186 !!!:!:!||| !! !||| ||| !||| ||||||||| !!! ! ! ! rGluArgIleValLysGluAsp---AsnSerThrGlnIleProLeuProTyrLeuSer 194599 : GGAGAGGATTGTCAAGGAGGAT---AACAGTACTCAGATACCTCTGCCATATTTGAGC : 194652 187 : SerSerLeuIleIleAspThrArgTyrSerProThrAsnGluIleValPheLeuLeuG : 206 !:!! !:!!.!!.!!! ! !..! !!||||||! ! !!||||||..!|||:!!! !| AsnTyrValPhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerG 194653 : AACTATGTTTTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGC : 194712 207 : lnValValAlaGlyAlaLeuIleHisSerIleAlaSerAlaAlaCysGlyLeuAlaAl : 225 ||:!!:!! !.!!::!:!!||| |||! !!!!!.! !! !.!!|||!.!|| lnIleLeuIleSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAl 194713 : AGATACTGATTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGC : 194769 226 : aMetLeuAlaValHisAlaCysGlyGlnMetGluVal : 237 |! :!! !:!!|||..!|||||| !.!.|||||| aThrIleIleMetHisCysCysGlyLeuPheGluVal 194770 : TACTATTATTATGCATTGCTGTGGCTTGTTCGAAGTG : 194807 vulgar: gi|805765827|ref|XP_012135096.1| 12 237 . KQ414889.1 194150 194807 + 233 M 42 126 G 1 0 M 83 249 G 4 0 M 32 96 G 1 0 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194151 194807 233 + . gene_id 20 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194151 194807 . + . KQ414889.1 exonerate:protein2genome:local exon 194151 194807 . + . insertions 0 ; deletions 6 KQ414889.1 exonerate:protein2genome:local similarity 194151 194807 233 + . alignment_id 20 ; Query gi|805765827|ref|XP_012135096.1| ; Align 194151 13 126 ; Align 194277 56 249 ; Align 194526 143 96 ; Align 194622 176 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 189 Query range: 125 -> 272 Target range: 304449 -> 304869 126 : AspLysLysIleMetValGluLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysT : 145 |||::::!!!!:|||:!!:!! ! !.!:!!.!.||||||.!.|||! !:!!|||. AspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIleCysA 304450 : GATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAATCTGCG : 304507 146 : hrPhePheMetTyrAlaValSerArgSerGlyPheAlaPheTyrTyrValValLeuPr : 164 !!.!.||||||||| !!!||| !.!!.!!|||:!!..!|||:!! laIlePheMetTyr------------ThrGlyGlyThrIleTyrHisThrValMet-- 304508 : CCATATTTATGTAT------------ACCGGCGGCACCATTTATCACACGGTCATG-- : 304552 165 : oThrSerAlaAspLysIleGlnAlaAlaAspAlaAsnLeuThrPheIleProLeuAla : 183 !! !||| ! !! ! !.!! !!!: !|||! !|||.!!! !||||||!.! -GlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgThrIleLysProLeuVal 304553 : -CAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTC : 304606 184 : CysProPheSerSerLeuIleIleAspThrArgTyrSerProThrAsnGluIleValP : 203 ! !||| !! !||| !:!!.!!|||..!!:! ||||||! ! !!|||:!:|||! TyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValT 304607 : TATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTT : 304666 204 : heLeuLeuGlnValValAlaGlyAlaLeuIleHisSerIleAlaSerAlaAlaCysGl : 222 :!!!!:!!!!. !:!!..!||| !:!!|||:!!||||||.!!:!!!.!|||||||| yrPheValHisCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGl 304667 : ACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGG : 304723 223 : yLeuAlaAlaMetLeuAlaValHisAlaCysGlyGlnMetGluValLeuMetAsnTrp : 241 ||||||||||:!:!!!|||..!|||||||||||||||!!:!!::!!:!!|||::! ! yLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArg 304724 : ATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGA : 304780 242 : LeuLysHisLeuValAspGlyArgSerAspMetGlyAspThrValAspAlaArgIleA : 261 ||| !!||||||:!!.!!!:!..! ..!..! !:!!||| !|||:!! LeuGlyAspLeuValAsnSerLysGlu------SerSerAspLeuAspLysArgLeuI 304781 : TTGGGTGATCTTGTCAACAGCAAAGAA------TCATCTGATTTAGATAAACGATTAA : 304834 262 : laSerValValSerGlnHisValArgIleLeuLys : 272 !..!:!!|||..!!!.|||:!!|||||||||!:! leGluIleValGluHisHisLeuArgIleLeuArg 304835 : TAGAAATTGTTGAGCATCATTTGCGAATTTTAAGG : 304869 vulgar: gi|805765827|ref|XP_012135096.1| 125 272 . KQ414889.1 304449 304869 + 189 M 24 72 G 4 0 M 10 30 G 1 0 M 86 258 G 2 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304450 304869 189 + . gene_id 21 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304450 304869 . + . KQ414889.1 exonerate:protein2genome:local exon 304450 304869 . + . insertions 0 ; deletions 7 KQ414889.1 exonerate:protein2genome:local similarity 304450 304869 189 + . alignment_id 21 ; Query gi|805765827|ref|XP_012135096.1| ; Align 304450 126 72 ; Align 304522 154 30 ; Align 304552 165 258 ; Align 304810 253 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 8 -> 202 Target range: 294651 -> 295227 9 : LysThrIleAspAspTyrGluLysAsn<->ValAsnLeuSerThrGlnTrpCysArgT : 27 !:!|||!!:|||||| !.!.!:!||| ||| !||| !:!!!::|||||| ArgThrMetAspAspThrAsnArgAsnAspValAlaAsnSerLeuLysTyrCysArgA 294652 : AGAACCATGGACGATACTAACAGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAA : 294709 28 : rpIleLeuLysProIleGlyValTrpProThr<-><->SerAspValThrGlyThrGl : 44 !!:!:|||||||||||||||:!!|||||| ! ||| !!..!!:! ! !.! rgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrSerHisThrSerLysLeuAs 294710 : GGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACAGTCACACCAGCAAACTGAA : 294766 45 : nLysCysMetTyrArgLeuIleAsnValMetCysTyrSerPheLeuSerPheLeuCys : 63 .||| !:!:! ! !:!!:!:! !!.! !||| ! ! !:!! !|||:!!! nLysValLeuSerIleIleLeuIleAlaTrpCysThrLeuThrValLeuPheValLeu 294767 : CAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTA : 294823 64 : ValProGlyIleLeuTyrValIleLeuGluValGluAspValTyrAsnGlnIleLysP : 83 |||||| !! !! !!:! !:!!!!!.!.|||::::::||| ::!!!:|||. ValProCysGlyTyrPheCysValPheHisValLysAsnValLysLeuLysMetLysL 294824 : GTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaacgtgaaattgaaGATGAAAC : 294883 84 : hePheGlyProSerSerPheCysMetMetAlaIleMetLysTyrTyrLeuMetIleLe : 102 !!.!.|||||| ! !!:!! !|||:!::!!!!::!:!:!||| !! !:!::!!|| euLeuGlyProValLeuTyrSerMetLeuSerMetLeuArgTyrSerCysLeuValLe 294884 : TTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTT : 294940 103 : uHisGluAsnAspIleArgAspCysIleGlnArgIleGluLeuAspTrpLysAsnIle : 121 | ! ! !! .!!!:! !!||||||:!! !|||||| !||||||||| ||| uLysThrProAlaPheLysHisCysIleGluAspIleGluAsnAspTrpLysLeuIle 294941 : GAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGAGAACGATTGGAAGTTGATC : 294997 122 : SerHisAspAspAspLysLysIleMetValGluLysAlaLysPheGlyArgGlnLeuI : 141 ..!:!! !!: !!::! !||||||:!!:!!!!.|||! ! !! !!:!::!:!!! AspAsnProGluHisArgAlaIleMetIleLysAsnAlaMetValThrGlnArgMetT 294998 : GATAATCCGGAACACCGAGCGATCATGATCAAGAACGCGATGGTCACGCAGAGGATGA : 295057 142 : leAlaLeuCysThrPhePheMetTyrAlaValSerArgSerGlyPheAlaPheTyrTy : 160 !!.! !! !|||.!!.!.!!:|||::! !:!! !||| |||:! hrValAlaPheThrIleIleIleTyrSerSerAlaValSer------------TyrHi 295058 : CCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGTCG------------TATCA : 295102 161 : rValValLeuProThrSerAlaAspLysIleGlnAlaAlaAspAlaAsnLeuThrPhe : 179 !!.!:!!:::||| :::::: :!::!! ! ! ! !||| |||.!! sAlaIleValProPhePheSerAsnAlaLeuGluAsnLysLysAsnAsn---ThrIle 295103 : CGCCATTGtgccatttttttcaaacgctTTGGAGAACAAGAAGAATAAT---ACGATT : 295156 180 : IleProLeuAlaCysProPheSerSerLeuIleIleAspThrArgTyrSerProThrA : 199 ! !!||| !! !||| !! !..!|||.!!:!!|||.!! !! !||||||||| ArgAlaLeuProIleProGlyTyrGluLeuPheValAspAlaTyrSerSerProThrT 295157 : CGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGTCCTACCT : 295216 200 : snGluIleVal : 202 !!||||||:!! yrGluIleIle 295217 : ACGAGATCATA : 295227 vulgar: gi|805765827|ref|XP_012135096.1| 8 202 . KQ414889.1 294651 295227 + 178 M 9 27 G 0 3 M 20 60 G 0 6 M 117 351 G 4 0 M 18 54 G 1 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294652 295227 178 + . gene_id 22 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294652 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294652 295227 . + . insertions 9 ; deletions 5 KQ414889.1 exonerate:protein2genome:local similarity 294652 295227 178 + . alignment_id 22 ; Query gi|805765827|ref|XP_012135096.1| ; Align 294652 9 27 ; Align 294682 18 60 ; Align 294748 38 351 ; Align 295099 159 54 ; Align 295153 178 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 297 -> 406 Target range: 305076 -> 305816 298 : LeuLeuGlyTyrTyrValIleMetGluSerLysSerAsnAspIleThrSerThrValT : 317 !!!||| |||::: ..!!!:!!!:!!|||!:!:!!! !..!||| !..!| PheLeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrT 305077 : TTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAA : 305134 318 : hrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl : 336 |||||! !:!:||||||||||||:!!||||||||||||||||||!!.||||||||||| hrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGl 305135 : CATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGG : 305191 337 : yGluLeuValAlaGluGlnCysArg{Ly} >>>> Target Intron 1 >>>> : 345 ||||:!!:!! !|||:!! { } 413 bp yGluIleLeuMetGluLysValSer{Ph}-+ ++ 305192 : TGAGATTCTTATGGAAAAGGTGagt{tt}tt.........................ag : 305631 346 : {s}IleGlyGluMetThrTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysL : 364 { }:!!||| ! !!:!||||||...||||||!.!|||||| !!!.! !! !! {e}ValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleH 305632 : {C}GTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATAC : 305688 365 : euCysCysValLeuIleIleAlaMetSerAsnSerSerIleThrLeuThrAlaGlyAs : 383 ! !! !:!!||||||||||||||||||!:!!:! !! !! !:!!!:!||||||!! isGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLy 305689 : ATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAA : 305745 384 : nMetValGluLeuSerIleGluThrPheThrAsnValValLysThrAlaPheAlaPhe : 402 .:!:|||!!:||||||:!!...|||||| !|||||| ! ! ! :::::: sValValAspLeuSerLeuSerThrPheGlyAsnValSerTyrTyrGlnTyrSerAsn 305746 : AGTAGTTGATTTATCTTTATCCACATTTGGAAACGTGAGTTACTATcaatattccaat : 305802 403 : LeuAsnValLeu : 406 :::::::::::: IleSerIleVal 305803 : atttcaattgtt : 305816 vulgar: gi|805765827|ref|XP_012135096.1| 297 406 . KQ414889.1 305076 305816 + 174 M 47 141 S 0 2 5 0 2 I 0 409 3 0 2 S 1 1 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305077 305816 174 + . gene_id 23 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305077 305219 . + . KQ414889.1 exonerate:protein2genome:local exon 305077 305219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305220 305221 . + . intron_id 1 ; splice_site "tt" KQ414889.1 exonerate:protein2genome:local intron 305220 305632 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305631 305632 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305633 305816 . + . KQ414889.1 exonerate:protein2genome:local exon 305633 305816 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305077 305816 174 + . alignment_id 23 ; Query gi|805765827|ref|XP_012135096.1| ; Align 305077 298 141 ; Align 305634 346 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 13 -> 117 Target range: 299671 -> 299989 14 : TyrGluLysAsnValAsnLeuSerThrGlnTrpCysArgTrpIleLeuLysProIleG : 33 |||:!!!!.:!!:!!:!!! !!!! !||| !|||!:!|||:!:||||||||||||| TyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleG 299672 : TACCAAAATGACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCG : 299729 34 : lyValTrpProThrSerAspValThrGlyThr<-><->GlnLysCysMetTyrArgLe : 50 ||||||||! ! ! !||| ! !..!!:! :!! ! !:!:! ! !:! lyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuValSerIleVa 299730 : GAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGT : 299786 51 : uIleAsnValMetCysTyrSerPheLeuSerPheLeuCysValProGlyIleLeuTyr : 69 !:!!! ..!!!:|||!:!||| !|||! !|||:!! !:!!|||..! !! !||| lLeuMetThrIleCysPheSerSerLeuPhePheIleValLeuProSerGlyHisTyr 299787 : TCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTAC : 299843 70 : ValIleLeuGluValGluAspValTyrAsnGlnIleLysPhePheGlyProSerSerP : 89 :!!.!!!!!! !! !:!!..!:!!:!! !:!!:!:||| ! ||||||||| !.!!| IlePhePheAlaGluLysSerIleHisValLysValLysValPheGlyProValGlyP 299844 : ATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTT : 299903 90 : heCysMetMetAlaIleMetLysTyrTyrLeuMetIleLeuHisGluAsnAspIleAr : 108 |||||:!: :!!|||:!:||||||! !! !:!: !|||:!!! ..!! .!!.. heCysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGl 299904 : TTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGA : 299960 109 : gAspCysIleGlnArgIleGluLeuAsp : 117 ! |||||||||!.!:!!||| !||| uArgCysIleGlnHisValGluArgAsp 299961 : ACGATGCATCCAACACGTCGAGAGAGAC : 299989 vulgar: gi|805765827|ref|XP_012135096.1| 13 117 . KQ414889.1 299671 299989 + 172 M 30 90 G 0 6 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299672 299989 172 + . gene_id 24 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299672 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299672 299989 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299672 299989 172 + . alignment_id 24 ; Query gi|805765827|ref|XP_012135096.1| ; Align 299672 14 90 ; Align 299768 44 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 22 -> 129 Target range: 200547 -> 200878 23 : GlnTrpCysArgTrpIleLeuLysProIleGlyValTrp<->ProThrSerAspValT : 41 |||||| !||||||||||||||| !!!!:!.!:!!||| !! !|||:!!:!!: GlnTrpAsnArgTrpIleLeuLysSerMetAlaLeuTrpPheAspLysSerAsnIleS 200548 : CAGTGGAATCGTTGGATCTTGAAATCAATGGCTTTGTGGTTTGACAAATCCAACATTT : 200605 42 : hrGlyThrGlnLysCysMetTyr-ArgLeuIleAsnValMetCysTyrSerPheLeuS : 60 !! !..!:!!|||! :!::!!#|||||||||!:!!.!:!:|||!! .!!!!.:!!. erProValGluLys***LeuHis#ArgLeuIleSerAlaValCys***GlyLeuMetG 200606 : CACCGGTCGAGAAATAACTACACTCGGCTAATCAGTGCCGTTTGTTAAGGATTGATGg : 200663 61 : erPheLeuCysValProGlyIleLeuTyrValIleLeuGluValGluAspValTyrAs : 79 ..:::... ::: ! !|||:!!|||.!!|||!!:||||||:!!:!! !!! lyTyrPheLeuIleLeuCysSerLeuHisValPheLeuAspValGluAsnIleLeuLy 200664 : gttactttttaatattatgcAGTTTACACGTGTTTCTTGACGTAGAAAATATACTTAA : 200720 80 : nGlnIleLysPhePheGlyPro<->SerSerPheCysMetMetAlaIleMetLysTyr : 97 .:!!||||||!!.|||! !||| ! !.!!|||:!! .!!|||:!!|||! ! sLysIleLysLeuPheValProLeuValLeuLeuCysLeuAlaThrIleLeuLysCys 200721 : AAAGATTAAATTGTTTGTTCCCCTAGTACTACTTTGCTTGGCTACGATTTTGAAGTGT : 200777 98 : TyrLeuMetIleLeuHisGluAsnAspIleArgAspCysIleGlnArgIleGluLeuA : 117 :!!||| !:!!||||||!!::!!|||! ! ! ||| !:!!!.!|||:!!! !! HisLeuSerValLeuHisAspAspAspThrTyrThrCysGlyGluHisIleLysTrpG 200778 : CATTTGTCGGTACTTCATGATGACGATACTTACACGTGTGGCGAGCATATAAAATGGG : 200837 118 : spTrpLysAsn<->IleSerHisAspAspAspLysLysIle : 129 !:|||!:! !! :!!!!!||||||:::|||||||||||| luTrpArgTyrCysValThrHisAspGluAspLysLysIle 200838 : AGTGGAGGTATTGTGTCACGCACGACgaggataaaaaaatt : 200878 vulgar: gi|805765827|ref|XP_012135096.1| 22 129 . KQ414889.1 200547 200878 + 154 M 13 39 G 0 3 M 13 39 F 0 1 M 38 114 G 0 3 M 34 102 G 0 3 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 200548 200878 154 + . gene_id 25 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 200548 200878 . + . KQ414889.1 exonerate:protein2genome:local exon 200548 200878 . + . insertions 9 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local similarity 200548 200878 154 + . alignment_id 25 ; Query gi|805765827|ref|XP_012135096.1| ; Align 200548 23 39 ; Align 200590 36 39 ; Align 200630 49 114 ; Align 200747 87 102 ; Align 200852 121 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 181 -> 272 Target range: 263326 -> 263602 182 : LeuAlaCysProPheSerSerLeuIleIleAspThrArgTyrSerProThrAsnGluI : 201 ||| !!|||||| ! ! !!.! !|||||| ..! ! !:!||||||||||||| LeuProCysProValTyrLysGluIleIleProValAspThrAsnProThrAsnGluI 263327 : CTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAATCCGACGAACGAGA : 263384 202 : leValPheLeuLeuGlnValValAlaGlyAlaLeuIleHisSerIleAlaSerAlaAl : 220 || !!.!! ! !||| !!:!!:!!||| !:!!:!! !:!!! !.!! !!.!|| lePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaThrThrValGlyAl 263385 : TCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGC : 263441 221 : aCysGlyLeuAlaAlaMetLeuAlaValHisAlaCysGlyGlnMetGluValLeuMet : 239 |! !|||:!!.!!|||:!!!!!|||! !|||||||||||||||:!!.!.||||||||| aPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMet 263442 : TTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATG : 263498 240 : AsnTrpLeuLysHisLeuValAsp<->GlyArgSerAspMetGlyAspThrValAspA : 258 ::!|||:!!! !.!.!!!|||:!! ..!|||..!!!:! !:!! ! ! !. SerTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLysAsnLeuTyrPheT 263499 : TCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTA : 263558 259 : laArgIleAlaSerValValSerGlnHisValArgIleLeuLys : 272 !!..!|||!.! !:!!|||..!!!.|||:!!|||:!!|||!:! hrGluIleGlyValIleValGluHisHisLeuArgValLeuArg 263559 : CCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTGAGG : 263602 vulgar: gi|805765827|ref|XP_012135096.1| 181 272 . KQ414889.1 263326 263602 + 146 M 66 198 G 0 3 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 263327 263602 146 + . gene_id 26 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 263327 263602 . + . KQ414889.1 exonerate:protein2genome:local exon 263327 263602 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 263327 263602 146 + . alignment_id 26 ; Query gi|805765827|ref|XP_012135096.1| ; Align 263327 182 198 ; Align 263528 248 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 339 -> 395 Target range: 234979 -> 235147 340 : AlaGluGlnCysArgLysIleGlyGluMetThrTyrMetIleGluTrpTyrArgLeuP : 359 .!!:!!||||||! !|||:!!||||||! ..!||||||! !|||||||||||||||| ThrGlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuP 234980 : ACTCAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTAC : 235037 360 : roGlyAsnLysLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleTh : 378 || !!!.! ||| !!! |||:!!||||||:!!! !|||!:!! ! !|||! roHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLy 235038 : CTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAA : 235094 379 : rLeuThrAlaGlyAsnMetValGluLeuSerIleGluThrPheThrAsnVal : 395 !:!!|||||||||!!..!.:!!:!!:!!|||:!!! !|||||| !:!!||| sIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235095 : AATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: gi|805765827|ref|XP_012135096.1| 339 395 . KQ414889.1 234979 235147 + 140 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234980 235147 140 + . gene_id 27 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234980 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234980 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234980 235147 140 + . alignment_id 27 ; Query gi|805765827|ref|XP_012135096.1| ; Align 234980 340 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 268 -> 308 Target range: 224128 -> 224248 269 : ArgIleLeuLysTyrLeuThrArgThrGluGlyAlaLeuGlnLeuIleSerPheValG : 288 !:! !! !!:!!:!||||||!.!|||||| !|||||||||! !:!!|||||||||| LysCysCysArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValG 224129 : AAATGTTGCAGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGG : 224186 289 : luPheLeuGlyCysThrLeuAspIleCysLeuLeuGlyTyrTyrValIleMetGluSe : 307 ||||||||||||||! !|||:!!|||||||||||||||||||||||||||:!!! ! ! luPheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleValValAr 224187 : AATTTCTAGGCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTGGTACG : 224243 308 : rLys : 308 !||| gLys 224244 : AAAG : 224248 vulgar: gi|805765827|ref|XP_012135096.1| 268 308 . KQ414889.1 224128 224248 + 136 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224129 224248 136 + . gene_id 28 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224129 224248 . + . KQ414889.1 exonerate:protein2genome:local exon 224129 224248 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224129 224248 136 + . alignment_id 28 ; Query gi|805765827|ref|XP_012135096.1| ; Align 224129 269 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 340 -> 400 Target range: 277548 -> 277728 341 : GluGlnCysArgLysIleGlyGluMetThrTyrMetIleGluTrpTyrArgLeuProG : 360 ..!||||||!:!|||:!!||||||:!!..!||||||! .!.|||||| !||||||! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 361 : lyAsnLysLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleThrLe : 379 !!!. ! ! ||| !! :!!|||||||||:!!! |||!:! ||| :: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 380 : uThrAlaGlyAsnMetValGluLeuSerIleGluThrPheThrAsnValValLysThr : 398 :|||||||||...::::::::::::|||:!: ! |||||| !:!!||| !..! ! eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspValArgSerLeu 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTACGTTCACTT : 277720 399 : AlaPhe : 400 !||| LeuPhe 277721 : CTTTTT : 277728 vulgar: gi|805765827|ref|XP_012135096.1| 340 400 . KQ414889.1 277548 277728 + 132 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277728 132 + . gene_id 29 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277549 277728 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277728 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277728 132 + . alignment_id 29 ; Query gi|805765827|ref|XP_012135096.1| ; Align 277549 341 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 341 -> 395 Target range: 264723 -> 264885 342 : GlnCysArgLysIleGlyGluMetThrTyrMetIleGluTrpTyrArgLeuProGlyA : 361 ||||||!:!|||:!!||||||:!!..!|||||| .!.|||||| !|||||| !! GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 362 : snLysLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleThrLeuTh : 380 !. ! ! ||| ! :!!||||||||| !! |||!:! ! !.!!! !!!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 381 : rAlaGlyAsnMetValGluLeuSerIleGluThrPheThrAsnVal : 395 |||||||!!.!!::!!.!.:!!|||!!: ! ||||||!:!:!!||| rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: gi|805765827|ref|XP_012135096.1| 341 395 . KQ414889.1 264723 264885 + 118 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264885 118 + . gene_id 30 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264885 118 + . alignment_id 30 ; Query gi|805765827|ref|XP_012135096.1| ; Align 264724 342 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 271 -> 345 Target range: 263671 -> 264657 272 : LysTyrLeuThrArgThrGluGlyAlaLeuGlnLeuIleSerPheValGluPheLeuG : 291 !..!:!:!! !|||! !:!!..!!.!:!!... !|||!!!|||||||||!!.!!! SerPheIleAspArgIleLysAsnValMetSerThrIleCysPheValGluLeuPheL 263672 : AGTTTCATAGATCGTATTAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCA : 263729 292 : lyCysThrLeuAspIleCys{Le} >>>> Target Intron 1 >>>> {u}Le : 299 !..!|||||||||||||||{:!} 764 bp {!}:! ysAlaThrLeuAspIleCys{Il}+- +-{e}Il 263730 : AGGCTACGCTGGATATATGC{AT}gc.........................aa{T}AT : 264517 300 : uGlyTyrTyrValIleMetGluSerLysSerAsnAspIleThrSerThrValThrTyr : 318 ! ! ! !!|||.!!..!|||!!!:!!|||:!:|||||| ::: ..!|||||| eThrIleAspValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyr 264518 : AACAATTGACGTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATAT : 264574 319 : IleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluL : 338 .!!!!::!!|||||||||:!! ! !|||||||||:!!.!.|||||||||||||||: PheMetIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluI 264575 : TTCATGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGA : 264634 339 : euValAlaGluGlnCysArgLys : 345 !!:!!.!!|||||| ||| leLeuThrGluGlnValIleLys 264635 : TATTGACTGAGcaggtaattaaa : 264657 vulgar: gi|805765827|ref|XP_012135096.1| 271 345 . KQ414889.1 263671 264657 + 115 M 26 78 S 0 2 5 0 2 I 0 760 3 0 2 S 1 1 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 263672 264657 115 + . gene_id 31 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 263672 263751 . + . KQ414889.1 exonerate:protein2genome:local exon 263672 263751 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263752 263753 . + . intron_id 1 ; splice_site "GC" KQ414889.1 exonerate:protein2genome:local intron 263752 264515 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264514 264515 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 264516 264657 . + . KQ414889.1 exonerate:protein2genome:local exon 264516 264657 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 263672 264657 115 + . alignment_id 31 ; Query gi|805765827|ref|XP_012135096.1| ; Align 263672 272 78 ; Align 264517 299 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 305 -> 342 Target range: 301686 -> 301797 306 : GluSerLysSerAsnAspIleThrSerThrValThrTyrIleIleLeuLeuIleSerL : 325 |||!!!:!!!:!!:!|||! ! !:!!! !:!!|||!:!.!!! !||||||! |||! GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerP 301687 : GAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGT : 301744 326 : euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln : 342 !!||||||||||||||||||||||||||||||||||||:!!:!!:!!|||||| heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln 301745 : TCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAG : 301797 vulgar: gi|805765827|ref|XP_012135096.1| 305 342 . KQ414889.1 301686 301797 + 110 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301687 301797 110 + . gene_id 32 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301687 301797 110 + . alignment_id 32 ; Query gi|805765827|ref|XP_012135096.1| ; Align 301687 306 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 302 -> 352 Target range: 206041 -> 206191 303 : ValIleMetGluSerLysSerAsnAspIleThrSerThrValThrTyrIleIleLeuL : 322 |||.!! !|||!!!:!!!:!|||:!!! !|||:!!..!:!!..!||||||! |||! ValPhe***GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuG 206042 : GTGTTTTAGGAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGC : 206099 323 : euIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGl : 341 !||||||! !|||||| !:!!||||||.!.||||||||||||:!!|||:!! !!! lnIleSerCysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAs 206100 : AGATATCTTGTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGA : 206156 342 : uGlnCysArgLysIleGlyGluMetThrTyrMet : 352 :||| ||| ! !! !..!|||! !|||:!! pGlnValArgAspTyrValSerMetLysTyrVal 206157 : TCAAGTGCGTGATTACGTATCAATGAAGTACGTG : 206191 vulgar: gi|805765827|ref|XP_012135096.1| 302 352 . KQ414889.1 206041 206191 + 109 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206042 206191 109 + . gene_id 33 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206042 206191 . + . KQ414889.1 exonerate:protein2genome:local exon 206042 206191 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206042 206191 109 + . alignment_id 33 ; Query gi|805765827|ref|XP_012135096.1| ; Align 206042 303 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 303 -> 342 Target range: 234797 -> 234914 304 : IleMetGluSerLysSerAsnAspIleThrSerThrValThrTyrIleIleLeuLeuI : 323 |||:!: |||:!!..!!!.... ... ..!:!!|||:!!|||:!!! !: IleLeuThrSerGlnGluLysSerLysGluLysLeuAlaSerTyrValIleValTyrV 234798 : ATTTTAACTTCTCAGGAAAAgtcgaaggaaaaattagCTTCATACGTCATCGTGTACG : 234855 324 : leSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl : 342 !:|||:!!|||||||||||||||||||||||||||||||||||| !:!!.!!||||| alSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGl 234856 : TGTCCATGACATTtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGCA : 234912 343 : n : 342 | n 234913 : G : 234914 vulgar: gi|805765827|ref|XP_012135096.1| 303 342 . KQ414889.1 234797 234914 + 107 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234798 234914 107 + . gene_id 34 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234798 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234798 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234798 234914 107 + . alignment_id 34 ; Query gi|805765827|ref|XP_012135096.1| ; Align 234798 304 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 340 -> 400 Target range: 283273 -> 283453 341 : GluGlnCysArgLysIleGlyGluMetThrTyrMetIleGluTrpTyrArgLeuProG : 360 ..!||||||!:!|||:!!||||||:!!..!||||||! .!.! !!:! !||||||! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 361 : lyAsnLysLysLeuCysCysValLeuIleIleAlaMetSerAsnSerSerIleThrLe : 379 !!!. ! ! ||| !! :!!|||||||||:!!! |||!:! ||| :: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 380 : uThrAlaGlyAsnMetValGluLeuSerIleGluThrPheThrAsnValValLysThr : 398 :||||||......:::::::::::!||| ! |||||| !:!!||| !..! ! eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspValArgSerLeu 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTACGTTCACTT : 283445 399 : AlaPhe : 400 !||| LeuPhe 283446 : CTTTTT : 283453 vulgar: gi|805765827|ref|XP_012135096.1| 340 400 . KQ414889.1 283273 283453 + 104 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283453 104 + . gene_id 35 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283453 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283453 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283453 104 + . alignment_id 35 ; Query gi|805765827|ref|XP_012135096.1| ; Align 283274 341 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 305 -> 342 Target range: 291368 -> 291479 306 : GluSerLysSerAsnAspIleThrSerThrValThrTyrIleIleLeuLeuIleSerL : 325 |||!!!:!!|||!:!||| ! !.!!! !:!!||||||:!!! !||||||! !|||! GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 326 : euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln : 342 !!||||||||||||.!.||||||||||||:!!|||||||||:!! !! !||| heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAG : 291479 vulgar: gi|805765827|ref|XP_012135096.1| 305 342 . KQ414889.1 291368 291479 + 104 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 291479 104 + . gene_id 36 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 291479 104 + . alignment_id 36 ; Query gi|805765827|ref|XP_012135096.1| ; Align 291369 306 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1345 Query range: 51 -> 447 Target range: 212842 -> 215136 52 : GluSerIleGluGlnSerGluAsnValAsnArgSerIleGlnLeuSerArgTrpIleL : 71 |||..! ! ! ..!:!!...|||||| |||||| !! !!:!||||||:!!| GluAspCysThrTyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuL 212843 : GAAGACTGTACCTACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTT : 212900 72 : euLysProMetGlyLeuTrpProAsnSerSerGluThrSerCysLeuGluLysTyrLe : 90 ||||||||! !||||||||||||:!!!.!||| ! ..!||| :!!|||||| !!:! euLysProThrGlyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIl 212901 : TGAAACCAACGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACAT : 212957 91 : uTyrArgLeuIleAsnValAlaCysTyrLeuLeuIlePheTyrLeuIleIleProCys : 109 ! !||||||:!!|||..!!.!|||||| !|||||| !||||||:!!||||||||| eAlaArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCys 212958 : CGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGC : 213014 110 : GlyLeuTyrMetLeuLeuAspMetGluAsnLeuTyrLysGluIleLysLeuPheGlyP : 129 .!!||||||:!!!!!||||||:!:||||||::::::|||||||||:!!||||||||| SerLeuTyrValPheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyI 213015 : AGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCA : 213074 130 : roMetIlePheCysValAlaAlaPheValLysTyrHisTrpLeuIleLeuHisGlyAs : 148 !.!. !|||||||||||||||.!. !|||||||||! !||||||||||||||||| lePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAs 213075 : TTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGA : 213131 149 : pAspIleArgGluCysMetGluHisIleLysTrpAspTrpLysAsnValGluTyrPhe : 167 |||||||||| !|||:!:||||||!!:|||!::||||||||||||:!! !:!! pAspIleArgThrCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGlu 213132 : CGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAG : 213188 168 : LysAspLysAspIleMetSerValAsnAlaAsnPheGlyLysArgIleValThrValC : 187 :!!||||||!!:||||||:!!:!!||||||!:!|||||||||||||||||||||:!!| GluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleC 213189 : GAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTT : 213248 188 : ysAlaLeuPheMetPheThrAlaCysThrPheTyrPheLeuIleIleProLeuAsnLe : 206 |||||!!!||||||!:!|||!.!! !|||||||||||||||:!!:!!|||:!!!:! ysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAl 213249 : GTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGC : 213305 207 : u<->ArgArgIleAlaThrAsp<->AsnValSerPheIleProValMetTyrProPhe : 223 ! !:!! !:!!||| !||| ||||||!!!|||! !! !:!!:!! !||| !! aAspLysMetValAlaGluAspLeuAsnValThrPheArgGlnMetValValProVal 213306 : GGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTC : 213362 224 : SerLysHisIleValAspIleArgTyrSerProValAsnGluIleValPheSerIleG : 243 |||!:! !|||||||||:!!|||||||||||||||||||||||| !!|||! !|||| SerArgPheIleValAspValArgTyrSerProValAsnGluIlePhePheLeuIleG 213363 : TCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTC : 213422 244 : lnPheValAlaGlyValLeuIleAsnAlaIleThrValGlySerCysSerLeuAlaAl : 262 ||.!!:!!|||||||||||||||:!!||||||.!!|||! !:!!|||||||||||||| lnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAl 213423 : AGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGC : 213479 263 : aValLeuAlaValHisAlaCysGlyGlnMetGluValLeuMetArgTrpLeuGluHis : 281 ||||!!!||||||||||||||||||||||||! :!!||||||!!!|||||||||||| aValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHis 213480 : TGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACAT : 213536 282 : LeuValAspGlyArgSerAspMetSerGluSerValAspHisArgIleAlaLysValI : 301 |||:!!|||||||||..!|||||||||:!!!:!|||||| !!||||||||| :!!: LeuIleAspGlyArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleV 213537 : TTGATAGACGGTAGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCG : 213596 302 : leSerGlnHisValArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s : 309 !:!:!||||||||||||||||||{||} 840 bp {| alAsnGlnHisValArgIleLeu{Ly}++ ++{s 213597 : TGAACCAGCATGTGCGGATACTG{AA}gt.........................ag{A : 214462 310 : }PheLeuAlaLeuThrGluLysThrPheLysGlnIleSerPheAlaGluPheLeuAla : 328 }||||||! !|||..!||||||.!!.!!::!|||:!!||||||||||||!!.|||!.! }PheLeuGluLeuValGluLysAlaLeuArgGlnValSerPheAlaGluLeuLeuVal 214463 : }TTCTTAGAGCTCGTGGAGAAAGCACTTCGGCAAGTATCTTTCGCTGAATTATTAGTA : 214517 329 : CysValLeuAsnLeuCysLeuValGlyTyrTyrIleIleThr >>>> Target In : 343 |||..!:!!||||||||||||||||||||||||||||||||| 68 b CysThrValAsnLeuCysLeuValGlyTyrTyrIleIleThr++ 214518 : TGCACGGTGAATCTCTGTCTCGTTGGATATTACATAATAACGgt.............. : 214564 344 : tron 2 >>>> GluTrpAsnSerLysAsnIleThrIleThrValGlyTyrValIle : 357 p ||||||||||||!!.|||:!!|||! !|||||| !||||||:!: ++GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValVal 214565 : ...........aggAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGGTG : 214672 358 : LeuTyrThrSerLeuAlaPheAsnIlePheIlePheCysTyrIleGlyGluLeuValA : 377 ||||||! !||||||...|||||||||||||||||||||||||||||||||||||||: LeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValS 214673 : TTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGGCGAGCTTGTGT : 214732 378 : laGluGln >>>> Target Intron 3 >>>> CysArgAsnValGlyGlnMet : 386 !!|||||| 123 bp |||!:!!!.||||||:!!:!: erGluGln++ ++CysLysLysValGlyGluVal 214733 : CTGAACAGgt.........................agTGCAAAAAGGTCGGAGAAGTA : 214882 387 : SerTyrMetIleAspTrpTyrArgLeuArgGlyAsnLysLysLeuPheCysIleLeuI : 406 ||||||||||||!!:||||||||||||! !|||||||||||||||! !|||||||||| SerTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCysCysIleLeuI 214883 : TCGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGA : 214942 407 : leMetAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSe : 425 |||||||||||||||||||||||:!!|||!!!|||||||||||||||||||||||||| leMetAlaMetSerAsnSerSerValLysPheThrAlaGlyAsnMetValGluLeuSe 214943 : TCATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATGGTAGAACTGTC : 214999 426 : rIleGlyThrPheThrAsp >>>> Target Intron 4 >>>> ValValLysT : 435 ||||.!!||||||!:!..! 69 bp ||||||::!| rIleSerThrPheSerSer++ ++ValValArgT 215000 : TATCAGCACTTTCAGCAGTgt.........................agGTTGTTCGAA : 215098 436 : hrSerValAlaPheLeuAsnValLeuArgLysPheSer : 447 ||||||||||||||||||||!.!|||||| |||||| hrSerValAlaPheLeuAsnAlaLeuArgThrPheSer 215099 : CATCGGTTGCCTTCTTAAACGCGTTACgaacattttca : 215136 vulgar: gi|805766339|ref|XP_003700911.2| 51 447 . KQ414889.1 212842 215136 + 1345 M 155 465 G 0 3 M 6 18 G 0 3 M 96 288 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 M 33 99 5 0 2 I 0 64 3 0 2 M 37 111 5 0 2 I 0 119 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212843 215136 1345 + . gene_id 1 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212843 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 212843 213621 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215019 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215019 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 215020 215021 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 215020 215088 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 215087 215088 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 215089 215136 . + . KQ414889.1 exonerate:protein2genome:local exon 215089 215136 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212843 215136 1345 + . alignment_id 1 ; Query gi|805766339|ref|XP_003700911.2| ; Align 212843 52 465 ; Align 213311 207 18 ; Align 213332 213 288 ; Align 214463 310 99 ; Align 214630 343 111 ; Align 214864 380 156 ; Align 215089 432 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 921 Query range: 56 -> 447 Target range: 208197 -> 212081 57 : SerGluAsnValAsnArgSerIleGlnLeuSerArgTrpIleLeuLysProMetGlyL : 76 !.!.!.:!!:!!!:! !!:!:!!!::|||!:! !|||! |||||| !!!:|||! LysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuLysIleIleGlyS 208198 : AAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGAAGATAATCGGCT : 208255 77 : euTrpProAsnSerSerGluThrSerCysLeuGluLysTyrLeuTyrArgLeuIleAs : 95 !||||||!..|||! !!!: !|||!! ||||||!!. !! !:!!! !|||:!!|| erTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHisIleLeuLeuAs 208256 : CCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCATATTCTCTTAAA : 208312 96 : nValAlaCysTyrLeuLeuIlePheTyrLeuIleIleProCysGlyLeuTyrMetLeu : 114 |||| ! !!:!!! !|||:!! !!:!:!!:!:|||||| !|||:!!!:! !:!! nValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGlyMetPheAlaIle 208313 : CGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATGTTCGCGATC : 208369 115 : LeuAspMetGluAsnLeuTyrLysGluIleLysLeuPheGlyProMetIlePheCysV : 134 |||! :!:|||:!!!!!||| ! :!!:!!|||:!!! !.!! !!:!!! !|||! !: LeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaLeuSerPhePheM 208370 : CTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTCTGAGCTTCTTCA : 208429 135 : alAlaAlaPheValLysTyrHisTrpLeuIleLeuHisGlyAspAspIleArgGluCy : 153 !! !||||||..!|||||| :!!! !:!!!.!! !! !|||||||||:!!|| etMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAspIleArgLysCy 208430 : TGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGACATACGGAAGTG : 208486 154 : sMetGluHisIleLysTrpAspTrpLysAsnValGluTyrPheLysAspLysAspIle : 172 |:!:|||:!!:!!:!! ||||||!:!|||||||||:!! :!!|||!:! ! ||| sValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGluAspArgLysIle 208487 : TGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAGGACAGGAAGATC : 208543 173 : MetSerValAsnAlaAsnPheGlyLysArgIleValThrValCysAlaLeuPheMetP : 192 |||! !! !||||||!:!|||!.!!:!!:!:!::!!..!:!!|||!.! !||||||! MetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysGlyAlaPheMetT 208544 : ATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCGGAGCTTTCATGT : 208603 193 : heThrAlaCysThrPheTyrPheLeuIleIleProLeuAsnLeuArgArgIleAlaTh : 211 :! !!.. ||||||::::!! !:!:||||||!.!! ! !!:!:!!!.! yrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAspLysValValGl 208604 : ACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGACAAGGTCGTCGA : 208660 212 : rAsp<-><->AsnValSerPheIleProValMetTyrProPheSerLysHisIleVal : 228 !!!: |||:!!!!!!:!! ! !:!!:!:|||||| !! !!||| !|||:!! uGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValProLysPheIleLeu 208661 : GGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCTAAGTTCATTCTG : 208717 229 : AspIleArgTyrSerProValAsnGluIleValPheSerIleGlnPheValAlaGlyV : 248 |||:!!|||||||||||||||||||||||| !!!:!!!!:!!|||!!.:!!:!!||| AspValArgTyrSerProValAsnGluIlePheTyrThrValGlnLeuLeuSerGlyP 208718 : GACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAATTGTTGTCGGGTT : 208777 249 : alLeuIleAsnAlaIleThrValGlySerCysSerLeuAlaAlaValLeuAlaValHi : 267 !!:!! !:!! !||||||||||||:!!|||.!!|||||||||:!!||||||:!!|| heValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLeuLeuAlaMetHi 208778 : TCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCA : 208834 268 : sAlaCysGlyGlnMetGluValLeuMetArgTrpLeuGluHisLeuValAspGlyArg : 286 |||||||||||||:!!:!!:!!|||||| !|||:!!||| ! ||||||||||||||| sAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeuValAspGlyArg 208835 : CGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTGGTCGATGGACGG : 208891 287 : SerAspMetSerGluSerValAspHisArgIleAlaLysValIleSerGlnHisValA : 306 ..!||| !..!:!!!:!:!!|||!!.|||:!:|||!!.:!!:!:..!|||||||||| GluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleValGluGlnHisValA 208892 : GAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCGTGGAGCAGCATGTTC : 208951 307 : rgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheLeuAlaLeuTh : 314 ||:!::!!{!!} 1536 bp {.}|||:!!|||||||| rgValIle{As}++ ++{n}PheIleAlaLeuTh 208952 : GAGTGATC{AA}gt.........................ag{T}TTTATAGCTCTGAC : 210511 315 : rGluLysThrPheLysGlnIleSerPheAlaGluPheLeuAlaCysValLeuAsnLeu : 333 ||||!!. !.!. ! :!!||||||!!. !|||.!.:!!!.!|||..!||||||:!! rGluAsnLeuLeuHisGluIleSerLeuIleGluMetValGlyCysThrLeuAsnMet 210512 : AGAGAACCTCCTGCACGAGATATCATTGATAGAAATGGTGGGGTGCACTCTGAACATG : 210568 334 : CysLeuValGlyTyrTyrIleIleThr >>>> Target Intron 2 >>>> Gl : 343 |||!!!:!!|||||||||! !!:! ! 66 bp || CysPheLeuGlyTyrTyrThrMetIle++ ++Gl 210569 : TGTTTCCTTGGCTATTACACGATGATTgt.........................agGA : 210664 344 : uTrpAsnSerLysAsnIleThrIleThrValGlyTyrValIleLeuTyrThrSerLeu : 362 ||||:!!||||||:!! !! !! !!:!:!! !|||:!!:!!||| !||||||:!! uTrpAspSerLysAspProIleSerSerLeuThrTyrIleValLeuLeuThrSerVal 210665 : ATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTACTCCTCACTTCTGTC : 210721 363 : AlaPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln >>>> : 380 .!!|||||||||||||||||||||||||||||||||:!!:!!||||||||| ThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAlaGluGln++ 210722 : ACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGCTGAACAggt..... : 210777 381 : Target Intron 3 >>>> CysArgAsnValGlyGlnMetSerTyrMetIleAsp : 391 999 bp !!!.||||||:!!! !||||||||||||||| ++ThrValLysValGlyGluLysSerTyrMetIleAsp 210778 : ....................agACAGTAAAAGTTGGAGAAAAGTCTTACATGATCGAC : 211807 392 : TrpTyrArgLeuArgGlyAsnLysLysLeuPheCysIleLeuIleMetAlaMetSerA : 411 |||||||||:!!! !|||!!.||| ||| !! !|||!!:!!::!!||||||: TrpTyrArgMetProGlyLysLysGlyLeuValValProLeuMetIleSerMetSerH 211808 : TGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGATGATCTCCATGTCAC : 211867 412 : snSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleGlyThrPheTh : 430 !!|||!!!! !|||:!!||||||||||||:!::!!! |||||||||.!!!:!||| isSerThrThrLysIleThrAlaGlyAsnLeuIleValLeuSerIleSerSerPheGl 211868 : ATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTTCTTTCAATCAGTAGTTTCGG : 211924 431 : rAsp >>>> Target Intron 4 >>>> ValValLysThrSerValAlaPheL : 440 !||| 104 bp |||:!!||||||||||||.!!!:!| yAsp++ ++ValIleLysThrSerValThrTyrL 211925 : TGACgt.........................agGTTATCAAGACTTCGGTAACATACT : 212058 441 : euAsnValLeuArgLysPheSer : 447 |||||:!!||||||! !|||!!! euAsnMetLeuArgThrPheThr 212059 : TGAACATGCTACGAACATTCACA : 212081 vulgar: gi|805766339|ref|XP_003700911.2| 56 447 . KQ414889.1 208197 212081 + 921 M 156 468 G 0 6 M 96 288 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 995 3 0 2 M 52 156 5 0 2 I 0 100 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208198 212081 921 + . gene_id 2 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208198 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208198 208961 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211929 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 211930 211931 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 211930 212033 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 212032 212033 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 212034 212081 . + . KQ414889.1 exonerate:protein2genome:local exon 212034 212081 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208198 212081 921 + . alignment_id 2 ; Query gi|805766339|ref|XP_003700911.2| ; Align 208198 57 468 ; Align 208672 213 288 ; Align 210499 310 99 ; Align 210664 343 111 ; Align 211774 380 156 ; Align 212034 432 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 844 Query range: 54 -> 311 Target range: 221357 -> 222134 55 : GluGlnSerGluAsnValAsnArgSerIleGlnLeuSerArgTrpIleLeuLysProM : 74 !!: ! !.! !||||||!!. !|||:!:|||||||||||||||||||||||||||! AspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProI 221358 : GATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGA : 221415 75 : etGlyLeuTrpProAsnSerSerGluThrSerCysLeuGluLysTyrLeuTyrArgLe : 93 !:|||:!!||||||||||||:!!.!.! !||| :!!|||!:!||||||||| !!|| leGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLe 221416 : TCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 94 : uIleAsnValAlaCysTyrLeuLeuIlePheTyrLeuIleIleProCysGlyLeuTyr : 112 ||||||||||!.!|||||| !|||||| !:!|||:!::!!||||||.!!|||||| uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 113 : MetLeuLeuAspMetGluAsnLeuTyrLysGluIleLysLeuPheGlyProMetIleP : 132 :!!:!!|||!!::!:|||:!!:!!|||!!...!|||||||||!!.||||||:!!! !| ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 133 : heCysValAlaAlaPheValLysTyrHisTrpLeuIleLeuHisGlyAspAspIleAr : 151 |||||||| !||||||:!!||||||||| !|||||||||:!!! !:!!|||||||| heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 152 : gGluCysMetGluHisIleLysTrpAspTrpLysAsnValGluTyrPheLysAspLys : 170 |||||||!!:|||!.!|||:!!|||||||||||||||:!! |||! !||||||||| gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 171 : AspIleMetSerValAsnAlaAsnPheGlyLysArgIleValThrValCysAlaLeuP : 190 |||||||||! !! !||||||! !||||||!:!|||:!::!!! !:!!|||.!!!!!| AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 191 : heMetPheThrAlaCysThrPheTyrPheLeuIleIleProLeuAsnLeuArgArgIl : 209 |||||!:!!:!... ...||||||:::::! !||||||!!!!:!:!! !!!:!|| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 210 : e<->AlaThrAsp<->AsnValSerPheIleProValMetTyrProPheSerLysHis : 226 | ||| !||| ||||||:::|||||||||:!!:!!!:!|||||||||!:! ! eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 227 : IleValAspIleArgTyrSerProValAsnGluIleValPheSerIleGlnPheValA : 246 |||||||||! !||||||||||||||||||||||||:!!||||||:!!|||.!!:!!| IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 247 : laGlyValLeuIleAsnAlaIleThrValGlySerCysSerLeuAlaAlaValLeuAl : 265 |||||!.!|||!!::!!::!|||||| !!.!:!!|||||||||!.!|||:!!!!!|| laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 266 : aValHisAlaCysGlyGlnMetGluValLeuMetArgTrpLeuGluHisLeuValAsp : 284 ||||||||||||||||||||||:!!|||||||||!!!||||||:!!||||||:!!:!! aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 285 : GlyArgSerAspMetSerGluSerValAspHisArgIleAlaLysValIleSerGlnH : 304 ||||||:!!||||||!!!.!.!:!||||||...||||||||||||:!!:!:!:!|||| GlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnH 222052 : GGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAAC : 222111 305 : isValArgIleLeuLysPheLeu : 311 ||||||||||||||:!!!:!:!! isValArgIleLeuGlnTyrVal 222112 : ACGTTCGAATATTGCAGTATGTA : 222134 vulgar: gi|805766339|ref|XP_003700911.2| 54 311 . KQ414889.1 221357 222134 + 844 M 155 465 G 0 3 M 3 9 G 0 3 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221358 222134 844 + . gene_id 3 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221358 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221358 222134 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221358 222134 844 + . alignment_id 3 ; Query gi|805766339|ref|XP_003700911.2| ; Align 221358 55 465 ; Align 221826 210 9 ; Align 221838 213 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 816 Query range: 54 -> 309 Target range: 217153 -> 217924 55 : GluGlnSerGluAsnValAsnArgSerIleGlnLeuSerArgTrpIleLeuLysProM : 74 ||| ...:::|||:::||| |||||||||! !!:!||||||:!:|||||||||| GluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProM 217154 : GAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGA : 217211 75 : etGlyLeuTrpProAsnSerSerGluThrSerCysLeuGluLysTyrLeuTyrArgLe : 93 |||||||||||||||||||| !! |||!!! ! ! !..!||| !||||||!:!|| etGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLe 217212 : TGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACT : 217268 94 : uIleAsnValAlaCysTyrLeuLeuIlePheTyrLeuIleIleProCysGlyLeuTyr : 112 |||||||!.! !|||||| !|||||| !!:!|||.!!:!!||||||..!:!!||| uIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyr 217269 : GATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTAC : 217325 113 : MetLeuLeuAspMetGluAsnLeuTyrLysGluIleLysLeuPheGlyProMetIleP : 132 :!!!!!|||!!::!:|||:!!|||||| ! :!!:!:|||||||||||||||:!!|||| ValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIleP 217326 : GTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCT : 217385 133 : heCysValAlaAlaPheValLysTyrHisTrpLeuIleLeuHisGlyAspAspIleAr : 151 |||||||| !|||||||||||||||:!!! ||||||:!!||| !! |||||||| heCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleAr 217386 : TCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCG : 217442 152 : gGluCysMetGluHisIleLysTrpAspTrpLysAsnValGluTyrPheLysAspLys : 170 |||||||:!!..!...|||:!! !!||||||!:!||||||..!! ! ||||||!:! gGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArg 217443 : CGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGG : 217499 171 : AspIleMetSerValAsnAlaAsnPheGlyLysArgIleValThrValCysAlaLeuP : 190 !!: |||! !||||||||||||||||||:::!:!:!:||| !:!!|||.!!!!!| GluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPheP 217500 : GAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCT : 217559 191 : heMetPheThrAlaCysThrPheTyrPheLeuIleIleProLeuAsnLeuArgArgIl : 209 |||||!:!!:!... ...||||||:::::! !||||||:!!!:!:!! !!||||| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIl 217560 : TCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAAT : 217616 210 : eAlaThrAsp<-><->AsnValSerPheIleProValMetTyrProPheSerLysHis : 226 | !:!!!!: |||:!!!!!|||||||||:!!:!!!:!||||||!!!|||:!! eLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyr 217617 : TCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTAT : 217673 227 : IleValAspIleArgTyrSerProValAsnGluIleValPheSerIleGlnPheValA : 246 |||:!!|||! !||||||!!!|||..!|||||||||||||||! !:!!|||!!.:!!| IleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleA 217674 : ATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCG : 217733 247 : laGlyValLeuIleAsnAlaIleThrValGlySerCysSerLeuAlaAlaValLeuAl : 265 |||||!.!|||!!::!!!.!|||||| !!.!:!!|||||||||||||||!.!!!!|| laGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAl 217734 : CTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGC : 217790 266 : aValHisAlaCysGlyGlnMetGluValLeuMetArgTrpLeuGluHisLeuValAsp : 284 |||||||||||||||||||!!:||||||||||||!.!||||||:!!||||||:!!||| aValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAsp 217791 : GGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGAC : 217847 285 : GlyArgSerAspMetSerGluSerValAspHisArgIleAlaLysValIleSerGlnH : 304 ||||||:!!|||||||||!!:!!!|||||| !|||||||||!..:!!:!!||||||| GlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnH 217848 : GGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAAC : 217907 305 : isValArgIleLeuLys : 309 ||||||||||||||||| isValArgIleLeuLys 217908 : ACGTTCGGATATTAAAG : 217924 vulgar: gi|805766339|ref|XP_003700911.2| 54 309 . KQ414889.1 217153 217924 + 816 M 158 474 G 0 6 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217154 217924 816 + . gene_id 4 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217154 217924 . + . KQ414889.1 exonerate:protein2genome:local exon 217154 217924 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217154 217924 816 + . alignment_id 4 ; Query gi|805766339|ref|XP_003700911.2| ; Align 217154 55 474 ; Align 217634 213 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 702 Query range: 54 -> 309 Target range: 226909 -> 227680 55 : GluGlnSerGluAsnValAsnArgSerIleGlnLeuSerArgTrpIleLeuLysProM : 74 !!: ! ..!||| !!:!!|||! !||||||||||||!:!||||||:!:|||||||||: AspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProL 226910 : GACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCAC : 226967 75 : etGlyLeuTrpProAsnSerSerGluThrSerCysLeuGluLysTyrLeuTyrArgLe : 93 !:|||:!!||||||:::||| !!:!!!:!||| ! :!!! !!:!! !!!!! ! !!|| euGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLe 226968 : TCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTT : 227024 94 : uIleAsnValAlaCysTyrLeuLeuIlePheTyrLeuIleIleProCysGlyLeuTyr : 112 |!!:..! !! !|||||| !|||!!: !!:! !:!::!! !! !!||||||||| uMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyr 227025 : GATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTAC : 227081 113 : MetLeuLeuAspMetGluAsnLeuTyrLysGluIleLysLeuPheGlyProMetIleP : 132 :!!:!!|||!!::!!:!!..! !|||!!. !:!:|||:!!.!!||||||||| !| ValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerP 227082 : GTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCT : 227141 133 : heCysValAlaAlaPheValLysTyrHisTrpLeuIleLeuHisGlyAspAspIleAr : 151 ||! !!.! !:!!.!!:!!|||||| ! !|||! !!!|||! !|||||||||! hePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLe 227142 : TCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCT : 227198 152 : gGluCysMetGluHisIleLysTrpAspTrpLysAsnValGluTyrPheLysAspLys : 170 !||||||:!:|||!..|||||||||||||||||||||:!!..!|||.!.:!!|||!:! uGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArg 227199 : CGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGA : 227255 171 : AspIleMetSerValAsnAlaAsnPheGlyLysArgIleValThrValCysAlaLeuP : 190 :!!:!:||| !..! !!||| !!!:!|||!:!!:!:!::!!|||:!!|||.!!!!!| AsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPheP 227256 : AACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTT : 227315 191 : heMetPheThrAlaCysThrPheTyrPheLeuIleIleProLeuAsnLeuArgArgIl : 209 ||:!:|||!::::: ...|||:::::::!!:!!:!!|||:!!||| ! !!!!!:! heValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerVa 227316 : TCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGT : 227372 210 : eAlaThrAsp<-><->AsnValSerPheIleProValMetTyrProPheSerLysHis : 226 !||||||!!: ||| !|||!:!|||! !:!! !!:!|||||| !!||| ! lAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIle 227373 : TGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATC : 227429 227 : IleValAspIleArgTyrSerProValAsnGluIleValPheSerIleGlnPheValA : 246 |||!.!|||:!!|||||||||||| !!||||||||| !!||||||:!!|||||||||. IleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValT 227430 : ATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAA : 227489 247 : laGlyValLeuIleAsnAlaIleThrValGlySerCysSerLeuAlaAlaValLeuAl : 265 !!|||:!!:!!:!::!!!.!:!!||| !!.!:!!||||||:!!||||||:!!||||| hrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAl 227490 : CAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGC : 227546 266 : aValHisAlaCysGlyGlnMetGluValLeuMetArgTrpLeuGluHisLeuValAsp : 284 |||||||||||||||||||||||||||||||:!! !||||||! !||||||:!!||| aValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAsp 227547 : GGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGAC : 227603 285 : GlyArgSerAspMetSerGluSerValAspHisArgIleAlaLysValIleSerGlnH : 304 ||||||:!!|||||||||:!!!!!:!!||| !!|||||||||!..:!!:!!!!!!!.| GlyArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValThrHisH 227604 : GGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACC : 227663 305 : isValArgIleLeuLys : 309 ||||||||||||||||| isValArgIleLeuLys 227664 : ACGTTCGAATATTGAAG : 227680 vulgar: gi|805766339|ref|XP_003700911.2| 54 309 . KQ414889.1 226909 227680 + 702 M 158 474 G 0 6 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226910 227680 702 + . gene_id 5 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226910 227680 . + . KQ414889.1 exonerate:protein2genome:local exon 226910 227680 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226910 227680 702 + . alignment_id 5 ; Query gi|805766339|ref|XP_003700911.2| ; Align 226910 55 474 ; Align 227390 213 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 642 Query range: 62 -> 446 Target range: 284526 -> 287264 63 : SerIleGlnLeuSerArgTrpIleLeuLysProMetGlyLeuTrpProAsnSerSerG : 82 |||:!!|||:!!!:!||||||.!!|||||||||!!:|||:!!|||||| !||| ! SerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuC 284527 : AGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCT : 284584 83 : luThrSerCysLeuGluLysTyrLeuTyrArgLeuIleAsnValAlaCysTyrLeuLe : 101 ..!!!! !||||||||| ! !! ! !:!!:!! :!! ! !!! !!!!|| ysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLe 284585 : GCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCT : 284641 102 : uIlePheTyrLeuIleIleProCysGlyLeuTyrMetLeuLeuAspMetGlu<->Asn : 119 |||| !!:!|||:!::!!||||||!.!|||! !! :!!||||||! :!! uIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAsp 284642 : GATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGAT : 284698 120 : LeuTyrLysGluIleLysLeuPheGlyProMetIlePheCysValAlaAlaPheValL : 139 ||| !!! !:!!||||||:!!.!!||||||:!!! !||||||:!! !||| :!!| LeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleL 284699 : CTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCA : 284758 140 : ysTyrHisTrpLeuIleLeuHisGlyAspAspIleArgGluCysMetGluHisIleLy : 158 |||||:!! ||||||! !!.!|||! ! ! ||| !!:!!|||:!!:!! !!|||:: ysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIleAr 284759 : AGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCG : 284815 159 : sTrpAsp{Tr} >>>> Target Intron 1 >>>> {p}LysAsnValGluTyr : 166 : !|||{||} 1012 bp {|} ::: !... gAlaAsp{Tr}++ +-{p}LeuSerHisSerGln 284816 : TGCGGAC{TG}gt.........................ac{G}CTTTCGCATAGtcaa : 285851 167 : PheLysAspLysAspIleMetSerValAsnAlaAsnPheGlyLysArgIleValThrV : 186 ::::::::::::||||||!!!! !!:!|||!...!!|||::! !:!:!.!! ! GluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIleP 285852 : gaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCT : 285911 187 : alCysAlaLeuPheMetPheThrAlaCysThrPheTyrPheLeuIleIleProLeu<- : 205 !!|||||| !||||||!:!:!!!.! ! !|||||| ! !:!:!!:|||||| heCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCy 285912 : TCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTG : 285968 206 : >AsnLeuArgArgIleAlaThrAspAsnValSerPheIleProValMetTyrProPhe : 223 !..:!!|||! ! !! !||||||! !!!! ! ! ! !! ! !!:!|||.!! sThrValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIle 285969 : CACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATC : 286025 224 : SerLysHisIleValAspIleArgTyrSerProValAsnGluIleValPheSerIleG : 243 ! !::: !:!!:!!||| ||| !|||||| ! !||||||||| ! !!!:| TyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetG 286026 : TATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGC : 286085 244 : lnPheValAlaGlyValLeuIleAsnAlaIleThrValGlySerCysSerLeuAlaAl : 262 ||! !:!!|||!.! !!:!!||| !!:!!:!!|||||||||:!!|||||||||||||| lnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAl 286086 : AATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGC : 286142 263 : aValLeuAlaValHisAlaCysGlyGlnMetGluValLeuMetArgTrpLeuGluHis : 281 ||||!!!!.!:!!|||!.!|||||||||.!...!:!!|||:!!! ! !|||!!: ! aValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLys 286143 : TGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAG : 286199 282 : LeuValAspGlyArgSerAspMetSerGluSerValAspHis<-><->ArgIleAlaL : 299 |||||||||||| !!.!! ! !!.!! !! ! ! ||| |||:!:!.! LeuValAspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyA 286200 : CTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAG : 286259 300 : ysValIleSerGlnHisValArgIleLeu{Ly} >>>> Target Intron 2 >> : 309 ! :!!|||..!!!.|||:!!!:!||||||{ } 408 bp spIleIleGluHisHisLeuLysIleLeu{Gl}++ 286260 : ATATCATCGAGCATCATCTGAAGATACTG{GG}gt....................... : 286293 310 : >> {s}PheLeuAlaLeuThrGluLysThrPheLysGlnIleSerPheAlaGluPhe : 326 { }|||:!!:!!! !! !||| ! !.!.!!.:!!|||!!!|||!.!||| ! ++{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluVal 286294 : ..ag{T}TTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTG : 286748 327 : LeuAlaCysValLeuAsnLeuCysLeuValGlyTyrTyrIleIleThr >>>> Tar : 343 :!!!.!|||..!||||||:!!|||!!!:!!|||||||||:!!:!:||| IleGlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeuThr++ 286749 : ATTGGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTACTGACGgt........ : 286801 344 : get Intron 3 >>>> GluTrpAsnSerLysAsnIleThrIleThrValGlyTyr : 355 80 bp ||||||.!...!!...!.! !! ! !|||:!! !||| ++GluTrpGluGlnSerGluThrIleGlyThrIleThrTyr 286802 : .................agGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTAT : 286915 356 : ValIleLeuTyrThrSerLeuAlaPheAsnIlePheIlePheCysTyrIleGlyGluL : 375 !! ||| ..!|||!!!.!!||||||:!!||||||.!!|||||||||||||||: CysThrLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluI 286916 : TGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAA : 286975 376 : euValAlaGluGln >>>> Target Intron 4 >>>> CysArgAsnValGly : 384 !!:!!:!!|||||| 74 bp ||| !!!.|||||| leLeuSerGluGln++ ++CysLeuLysValGly 286976 : TTCTCTCCGAACaggt.........................agtGCTTAAAAGTCGGC : 287076 385 : GlnMetSerTyrMetIleAspTrpTyrArgLeuArgGlyAsnLysLysLeuPheCysI : 404 ! !!!||||||||||||||||||||||||! !|||!!.! ! ! ! !! | LeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuI 287077 : TTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGA : 287136 405 : leLeuIleMetAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGl : 423 ||||||||.!.|||:!!||||||||||||||||||||||||||||||!!.!!::!!!! leLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAs 287137 : TACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGA : 287193 424 : uLeuSerIleGlyThrPheThrAspValValLysThrSerValAlaPheLeuAsnVal : 442 :||||||:!!.!!!:!||| !..!||| !! ! !!:!:!!:!!!:!! !:!!:!! pLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 287194 : TCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 287250 443 : LeuArgLysPhe : 446 ! ...||| TyrAspAsnPhe 287251 : Tacgataatttt : 287264 vulgar: gi|805766339|ref|XP_003700911.2| 62 446 . KQ414889.1 284526 287264 + 642 M 56 168 G 0 3 M 42 126 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 43 129 G 0 3 M 91 273 G 0 6 M 13 39 S 0 2 5 0 2 I 0 404 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284527 287264 642 + . gene_id 6 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284527 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284527 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286698 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 4 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 3 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287264 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287264 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284527 287264 642 + . alignment_id 6 ; Query gi|805766339|ref|XP_003700911.2| ; Align 284527 63 168 ; Align 284698 119 126 ; Align 285839 162 129 ; Align 285971 205 273 ; Align 286250 296 39 ; Align 286700 310 99 ; Align 286879 343 111 ; Align 287064 380 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 603 Query range: 62 -> 383 Target range: 259775 -> 261856 63 : SerIleGlnLeuSerArgTrpIleLeuLysProMetGlyLeuTrpProAsnSerSerG : 82 |||:!!|||!!!!:!||||||.!!|||||||||!!:||| !|||||| !||||||. SerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerS 259776 : AGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCT : 259833 83 : luThrSerCysLeuGluLysTyrLeuTyrArgLeuIleAsnValAlaCysTyrLeuLe : 101 ..|||!!! ! ||||||||| !:!!! ! !:!!:!:! ! !! !|||||| ! erThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerTh 259834 : CCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTAC : 259890 102 : uIlePheTyrLeuIleIleProCysGlyLeuTyrMetLeuLeuAspMetGluAsnLeu : 120 !|||.!. ! !:!:|||||||||! !|||:!!|||||||||!!:! !|||!:!||| rIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeu 259891 : CATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTG : 259947 121 : TyrLysGluIleLysLeuPheGlyProMetIlePheCysValAlaAlaPheValLysT : 140 |||! !:!!! |||:!!.!!||||||:!:! ! !!! !!!.!!.!! !:!!!!.| TyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnT 259948 : TACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATT : 260007 141 : yrHisTrpLeuIleLeuHisGlyAspAspIleArgGluCysMetGluHisIleLysTr : 159 || !|||:!:|||...||| ||||||! !...|||:!!||||||:!::!! yrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAs 260008 : ACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAA : 260064 160 : pAspTrpLysAsnValGluTyrPheLysAspLysAspIleMetSerValAsnAlaAsn : 178 ||||||!:!! !:!! ! ||||||:!!:!!:!:|||! ! ! !!|||!!. nAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLys 260065 : CGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAA : 260121 179 : PheGlyLysArgIleValThrValCysAlaLeuPheMetPheThrAlaCysThrPheT : 198 ||||||!:! !:!!!.!.!! !|||||| !|||:!! !!.! ! !! !! PheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysP 260122 : TTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCT : 260181 199 : yrPheLeuIleIleProLeuAsnLeuArgArgIleAlaThrAspAsnValSerPheIl : 217 :!! !|||:!!! !|||!:! !..! !||| !..!! |||! !!!! || heCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIl 260182 : TCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGAT : 260238 218 : eProValMetTyrProPheSer<-><->LysHisIleValAspIleArgTyrSerPro : 234 | ! !:!!! |||! !:!! |||.!.:!::!!:!!:!:!.! !!|||||| eValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerPro 260239 : CGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCT : 260295 235 : ValAsnGluIleValPheSerIleGlnPheValAlaGlyValLeuIleAsnAlaIleT : 254 :!!||||||||||||.!! !:!:|||||||||:!!||| !!:!!:!:|||:!!! !| MetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerT 260296 : ATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCA : 260355 255 : hrValGlySerCysSerLeuAlaAlaValLeuAlaValHisAlaCysGlyGlnMetGl : 273 ||||||||! !! !||||||||||||||||||.!!!.!|||||||||||||||:!!.! hrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAs 260356 : CCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAA : 260412 274 : uValLeuMetArgTrpLeuGluHisLeuValAsp<->GlyArgSerAspMetSerGlu : 291 .|||||||||..!|||:!! !.!.!!!|||||| ..!|||!:! ! !!.!:!! nValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLys 260413 : CGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAG : 260469 292 : SerValAspHisArgIleAlaLysValIleSerGlnHisValArgIleLeu{Ly} > : 309 :!! ! ! ! ..!|||!.! !:!!:!!..!!!.|||:!!||| !|||{! } AlaProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeu{Th}++ 260470 : GCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC{AC}gt. : 260527 310 : >>> Target Intron 1 >>>> {s}PheLeuAlaLeuThrGluLysThrPheLy : 319 257 bp { }|||:!!:!!! !! !||| ! ..!.!.!! ++{r}PheIleSerArgIleGluAspValMetAs 260528 : ........................ag{C}TTCATATCGCGTATCGAGGATGTGATGAA : 260810 320 : sGlnIleSerPheAlaGluPheLeuAlaCysValLeuAsnLeuCysLeuValGlyTyr : 338 .!:!|||!!!||| !|||!!.!!! !|||..!|||:!!:!!||||||:!!|||||| nArgIleCysPheLeuGluLeuPheArgCysThrLeuAspIleCysLeuLeuGlyTyr 260811 : CCGGATATGCTTCCTGGAGTTGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTAC : 260867 339 : TyrIleIleThr >>>> Target Intron 2 >>>> GluTrpAsnSerLysAs : 348 ||||||:!!! ! 852 bp |||||| !..!:!!:! TyrIleLeuMet++ ++GluTrpAlaGluGlnAs 260868 : TATATTCTTATGgt.........................agGAATGGGCTGAGCAAGA : 261749 349 : nIleThrIleThrValGlyTyrValIleLeuTyrThrSerLeuAlaPheAsnIlePhe : 367 !||| !! ! ! ! !||| !!!!::!! ! !:!!:!!..!||||||:!!||| pIleGlnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPhe 261750 : TATACAAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTT : 261806 368 : IlePheCysTyrIleGlyGluLeuValAlaGluGlnCysArgAsnVal : 383 |||.!!|||||||||||||||:!!:!!.!!|||||| !:!:!!:!! IleIleCysTyrIleGlyGluIleLeuThrGluGlnValGlnHisLeu 261807 : ATAATCTGTTACATCGGTGAAATACTAACGGAACAGGTACAACATTTG : 261856 vulgar: gi|805766339|ref|XP_003700911.2| 62 383 . KQ414889.1 259775 261856 + 603 M 162 486 G 0 6 M 60 180 G 0 3 M 24 72 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259776 261856 603 + . gene_id 7 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259776 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259776 260524 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261856 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261856 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259776 261856 603 + . alignment_id 7 ; Query gi|805766339|ref|XP_003700911.2| ; Align 259776 63 486 ; Align 260268 225 180 ; Align 260451 285 72 ; Align 260783 310 99 ; Align 261734 343 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 532 Query range: 62 -> 442 Target range: 278579 -> 280465 63 : SerIleGlnLeuSerArgTrpIleLeuLysProMetGlyLeuTrpProAsnSerSerG : 82 |||:!!|||:!!!:!||||||.!!|||||||||!!:|||:!!|||||| !||| ! SerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuC 278580 : AGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCT : 278637 83 : luThrSerCysLeuGluLysTyrLeuTyrArgLeuIleAsnValAlaCysTyrLeuLe : 101 ..!!!! !||||||||| ! !! ! !:!!:!! :!! ! !!! !!!!|| ysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLe 278638 : GCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCT : 278694 102 : uIlePheTyrLeuIleIleProCysGlyLeuTyrMetLeuLeuAspMetGlu<->Asn : 119 |||| !!:!|||:!::!!||||||!.!|||! !! :!!||||||! :!! uIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAsp 278695 : GATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGAT : 278751 120 : LeuTyrLysGluIleLysLeuPheGlyProMetIlePheCysValAlaAlaPheValL : 139 ||| !!! !:!!||||||:!!.!!||||||:!:! !||||||..! !||| :!!| LeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrIleL 278752 : CTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCA : 278811 140 : ysTyrHisTrpLeuIleLeuHisGlyAspAspIleArgGluCysMetGluHisIleLy : 158 |||||:!! |||!!:! !!.!|||! ! ! ||| !!:!!|||:!!.!. !!|||:: ysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIleAr 278812 : AATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCG : 278868 159 : sTrpAspTrpLys<-><-><->AsnValGluTyrPheLysAspLysAspIleMetSer : 174 : !||||||... ::: !... ::::::::::::||||||!!! gThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMetArg 278869 : TACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTGAGG : 278925 175 : ValAsnAlaAsnPheGlyLysArgIleValThrValCysAlaLeuPheMetPheThrA : 194 ! !!:!|||!...!!|||::! !:!:!.!! ! !! !!||| !||||||!:!:!!! AspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerG 278926 : GACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCG : 278985 195 : laCysThrPheTyrPheLeuIleIleProLeu<->AsnLeuArgArgIleAlaThrAs : 212 .! ! ..!|||||| ! !:!:!!:|||||| :!!|||! ! !! !|| lyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIleAs 278986 : GCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGA : 279042 213 : pAsnValSerPheIleProValMetTyrProPheSerLysHisIleValAspIleArg : 231 ||||! !!!! ! ! ! !! ! !!:!|||.!!! !::: !:!!:!!||| ||| pAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArg 279043 : CAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCGCGT : 279099 232 : TyrSerProValAsnGluIleValPheSerIleGlnPheValAlaGlyValLeuIleA : 251 !|||||| ! !||||||||| ! !!!:|||! !:!!|||!.! !!:!!:!! ThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValLeuT 279100 : ACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTAT : 279159 252 : snAlaIleThrValGlySerCysSerLeuAlaAlaValLeuAlaValHisAlaCysGl : 270 !!:!!:!!|||||||||:!!||||||||| !||||||!!!!.!:!!|||!.!||||| yrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCysGl 279160 : ACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGG : 279216 271 : yGlnMetGluValLeuMetArgTrpLeuGluHisLeuValAspGlyArgSer{A} > : 288 ||||.!...!:!!|||:!!! ! !|||!!: ! |||:!!|||||| !!.!{|} yGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLys{A}+- 279217 : GCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAA{G}gg. : 279273 289 : >>> Target Intron 1 >>>> {sp}MetSerGluSerValAspHisArgIleA : 298 654 bp {||} .!!! !!! ! :!!! !.!! +-{sp}ArgGlyAlaProGluArgAsnMetPheA 279274 : ........................aa{AT}CGAGGGGCTCCTGAACGAAATATGTTTC : 279954 299 : laLysValIleSerGlnHisValArgIleLeuLysPhe<->LeuAlaLeuThrGluLy : 316 !::!! ! !!!! !||||||..! !:!! ||| :!! !!!!|||.!. rgArgGlyAspTrpLeuHisValGluHisMetLeuPheAspIleLeuPheThrHisGl 279955 : GTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGACATATTATTTACTCACGG : 280011 317 : sThrPheLysGlnIleSerPheAlaGluPheLeuAlaCysValLeuAsnLeuCysLeu : 335 !.! ! .!.:!!!!!!:! !.!..!!:!! !... !:!! !!! !:!! yAsnArgAspAspLeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMet 280012 : TAACAGAGACGACTTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATG : 280068 336 : ValGlyTyrTyrIleIleThrGluTrpAsnSerLysAsnIleThrIleThrValGlyT : 355 !..!! ! :!!.!! !||||||.!...!!!.:!! !! ! !||| !! !| TyrSerLeuSerValPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrT 280069 : TACTCGTTGTCAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGT : 280128 356 : yrValIleLeuTyrThrSerLeuAlaPheAsnIlePheIlePheCysTyrIleGlyGl : 374 ||:!!!!:!!! !! !||||||.!!||||||:!!||||||.!!|||||||||||||| yrLeuMetPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGl 280129 : ATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGA : 280185 375 : uLeuValAlaGluGln >>>> Target Intron 2 >>>> CysArgAsnValG : 384 |:!!:!!:!!|||||| 74 bp ||| !!!.|||| uIleLeuSerGluGln++ ++CysLeuLysValG 280186 : AATTCTCTCCGAACaggt.........................agTGCTTAAAAGTCG : 280289 385 : lyGlnMetSerTyrMetIleAspTrpTyrArgLeuArgGlyAsnLysLysLeuPheCy : 403 || ! !!!||||||||||||||||||||||||! !|||!!.||| !! ! !! lyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLe 280290 : GCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTT : 280346 404 : sIleLeuIleMetAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetVal : 422 |||||||||.!.|||:!!||||||||||||||||||||||||||||||!!.!!::!! uIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIle 280347 : GATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATC : 280403 423 : GluLeuSerIleGlyThrPheThrAspValValLysThrSerValAlaPheLeuAsnV : 442 !!:||||||:!!.!!!:!||| !..!||| !! ! !!:!:!!:!!!:!! !:!!: AspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisL 280404 : GATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATT : 280463 443 : al : 442 !! eu 280464 : TG : 280465 vulgar: gi|805766339|ref|XP_003700911.2| 62 442 . KQ414889.1 278579 280465 + 532 M 56 168 G 0 3 M 44 132 G 0 9 M 42 126 G 0 3 M 83 249 S 0 1 5 0 2 I 0 650 3 0 2 S 1 2 M 22 66 G 0 3 M 69 207 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278580 280465 532 + . gene_id 8 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278580 279270 . + . KQ414889.1 exonerate:protein2genome:local exon 278580 279270 . + . insertions 15 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 279271 279272 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local intron 279271 279924 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279923 279924 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 279925 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 279925 280202 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278580 280465 532 + . alignment_id 8 ; Query gi|805766339|ref|XP_003700911.2| ; Align 278580 63 168 ; Align 278751 119 132 ; Align 278892 163 126 ; Align 279021 205 249 ; Align 279927 289 66 ; Align 279996 311 207 ; Align 280277 380 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 498 Query range: 62 -> 379 Target range: 256655 -> 258375 63 : SerIleGlnLeuSerArgTrpIleLeuLysProMetGlyLeuTrpProAsnSerSerG : 82 |||:!!||||||!:!||||||.!!|||||||||!!:||| !|||||| !||||||. SerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerS 256656 : AGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGT : 256713 83 : luThrSerCysLeuGluLysTyrLeuTyrArgLeuIleAsnValAlaCysTyrLeuLe : 101 ..|||!!! !||||||::! !!:!!! ! !:!!:!:|||:!!!.!|||||| !! erThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySe 256714 : CCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTC : 256770 102 : uIlePheTyrLeuIleIleProCysGlyLeuTyrMetLeuLeuAspMetGluAsnLeu : 120 !|||!!.!:! !:!:||||||||| !|||:!!:!:!!!|||||| !!:!:!!!! rIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPhe 256771 : TATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTC : 256827 121 : TyrLysGluIleLysLeuPheGlyProMetIlePheCysValAlaAlaPheValLysT : 140 ||| ::::::||| ||||||||||||! ! !!! :!! !::!! !!.!!!.| TyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnT 256828 : TAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATT : 256887 141 : yrHisTrpLeuIleLeuHisGlyAspAspIleArgGluCysMetGluHisIleLysTr : 159 || ! !|||:!:|||!!.||| ! ||||||||| ! |||:!:|||||||||:!! yrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluTh 256888 : ACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAAC : 256944 160 : pAspTrpLysAsnValGluTyrPheLysAspLysAspIleMetSerValAsnAlaAsn : 178 !||||||!:!! |||..! ||||||:!!.!.:!:|||! ! !||||||!.. rAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArg 256945 : GGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGA : 257001 179 : PheGlyLysArgIleValThrValCysAlaLeuPheMetPheThrAlaCysThrPheT : 198 ||||||::: !:!:!.!||| !!|||||| !.!!||| !:!!.! : PheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysP 257002 : TTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtt : 257061 199 : yrPheLeuIleIleProLeuAsnLeuArgArgIleAlaThrAspAsnValSerPheIl : 217 ::|||::! !!|||||| !..!! !||| !..!! |||! !!!! || hePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIl 257062 : tcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGAT : 257118 218 : eProValMetTyrProPheSer<-><->LysHisIleValAspIleArgTyrSerPro : 234 | ! !:!! ||| !!!!! ||| ! :!::!!:!!:!! ! ! |||||| eValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerPro 257119 : CGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCT : 257175 235 : ValAsnGluIleValPheSerIleGlnPheValAlaGlyValLeuIleAsnAlaIleT : 254 ..!|||||||||||| !!! !!!:||| ! !:!!..!:!!:!! !.!.!!! !| ThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerT 257176 : ACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTA : 257235 255 : hrValGlySerCysSerLeuAlaAlaValLeuAlaValHisAlaCysGlyGlnMetGl : 273 |||||.!!! !! !|||||||||||||||!!!|||..!||||||! !||||||:!! hrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuTh 257236 : CAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGAC : 257292 274 : uValLeuMetArgTrpLeuGluHisLeuValAspGlyArgSerAspMetSerGluSer : 292 ||||||||| !|||:!! !.!.!!!|||:!!! ! !!!!:!! ...:::::: rValLeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThr 257293 : TGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacg : 257349 293 : ValAspHisArg<->IleAlaLysValIleSerGlnHisValArgIleLeu{Ly} > : 309 !!:! |||!.! !:!!:!:..!!!.|||:!!|||:!:|||{!:} PheProPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Ar}++ 257350 : tttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt. : 257407 310 : >>> Target Intron 1 >>>> {s}PheLeuAlaLeuThrGluLysThrPheLy : 319 760 bp {!}! !:!! !! ! !.!. ! ! :! +-{g}CysValMetTyrArgAsnLeuLeuGlnGl 257408 : ........................ac{G}TGCGTTATGTACCGAAACCTGTTGCAACA : 258193 320 : sGlnIleSerPheAlaGluPheLeuAlaCysValLeuAsnLeuCysLeuValGlyTyr : 338 !.!. !! ! ! ! !:! ! !! ! !:!!:!! ||| ::: nAsnGly***AsnArgThrTyrAsnAsnPheProIleHisSerTyrSerValIlePhe 258194 : AAATGGTTAAAATCGTACCTACAATAATTTTCCTATACACAGctattctgttattttt : 258250 339 : TyrIleIleThrGluTrpAsnSerLysAsnIleThrIleThrValGlyTyrValIleL : 358 ||| ... ||||||::!!!!::::::||| ...||| !!!!:: TyrTyrPheGlnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheMetI 258251 : tattattttcaggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTATGA : 258310 359 : euTyrThrSerLeuAlaPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAl : 377 !! !! !||||||:::||||||||||||:::...|||||||||||||||:!!:!!.! leLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLeuTh 258311 : TACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATTAAC : 258367 378 : aGluGln : 379 !|||||| rGluGln 258368 : AGAACAG : 258375 vulgar: gi|805766339|ref|XP_003700911.2| 62 379 . KQ414889.1 256655 258375 + 498 M 162 486 G 0 6 M 72 216 G 0 3 M 12 36 S 0 2 5 0 2 I 0 756 3 0 2 S 1 1 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256656 258375 498 + . gene_id 9 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256656 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256656 257404 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 258164 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258163 258164 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 258165 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258165 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256656 258375 498 + . alignment_id 9 ; Query gi|805766339|ref|XP_003700911.2| ; Align 256656 63 486 ; Align 257148 225 216 ; Align 257367 297 36 ; Align 258166 310 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 479 Query range: 305 -> 444 Target range: 224128 -> 224761 306 : ArgIleLeuLysPheLeuAlaLeuThrGluLysThrPheLysGlnIleSerPheAlaG : 325 !:! !! !!:!||||||.!!! !|||||||||.!!.!.:!!|||:!!||||||!.!| LysCysCysArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValG 224129 : AAATGTTGCAGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGG : 224186 326 : luPheLeuAlaCysValLeuAsnLeuCysLeuValGlyTyrTyrIleIleThr >>> : 343 ||||||||!.!|||:!!||||||:!!||||||:!!|||||||||:!!|||..! luPheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleVal++ 224187 : AATTTCTAGGCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTGgt... : 224242 344 : > Target Intron 1 >>>> GluTrpAsnSerLysAsnIleThrIleThrValG : 354 84 bp ||||||:::|||...:!!:!!|||! !.!!||| ++GluTrpSerSerSerHisLeuThrSerAlaValT 224243 : ......................aggagtggagttcgagtcATTTAACTAGCGCGGTGA : 224357 355 : lyTyrValIleLeuTyrThrSerLeuAlaPheAsnIlePheIlePheCysTyrIleGl : 373 !||| !!|||||| !! !||||||...||||||||||||||||||||||||||||| hrTyrPheIleLeuLeuMetSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 224358 : CTTACTTCATACTACTCATGTCtcttactttcaatatttttatattttgttacatAGG : 224414 374 : yGluLeuValAlaGluGln >>>> Target Intron 2 >>>> CysArgAsnV : 383 ||||||||||||||||||| 65 bp |||......: yGluLeuValAlaGluGln++ ++CysGluLysI 224415 : AGAGCTGGTAGCTGAAcaggt.........................agtgtgaaaaaa : 224509 384 : alGlyGlnMetSerTyrMetIleAspTrpTyrArgLeuArgGlyAsnLysLysLeuPh : 402 ::||||||:!!|||||||||||||||||||||||||||! !|||||||||||||||! leGlyGlnValSerTyrMetIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCy 224510 : ttggacaAGTGTCGTACATGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATG : 224566 403 : eCysIleLeuIleMetAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMet : 421 !||||||||||||!!:|||||||||||||||||||||||||||||||||||||||||| sCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMet 224567 : CTGCATTCTGATAATCGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATG : 224623 422 : ValGluLeuSerIleGlyThrPheThrAsp >>>> Target Intron 3 >>>> : 432 |||||||||!!!:!! !|||||| !||| 67 bp ValGluLeuCysLeuThrThrPheGlyAsp++ + 224624 : GTCGAACTGTGTCTAACCACTTTCGGTGACgt.........................a : 224721 433 : ValValLysThrSerValAlaPheLeuAsnValLeuArg : 444 ||||||||||||:!!|||||||||||||||||||||||| +ValValLysThrAlaValAlaPheLeuAsnValLeuArg 224722 : gGTTGTCAAGACAGCTGTCGCATTTTTGAACGTGTTACGA : 224761 vulgar: gi|805766339|ref|XP_003700911.2| 305 444 . KQ414889.1 224128 224761 + 479 M 37 111 5 0 2 I 0 80 3 0 2 M 37 111 5 0 2 I 0 61 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224129 224761 479 + . gene_id 10 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224129 224239 . + . KQ414889.1 exonerate:protein2genome:local exon 224129 224239 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224240 224241 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224240 224323 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224322 224323 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224655 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224655 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224656 224657 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224656 224722 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 224721 224722 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 224723 224761 . + . KQ414889.1 exonerate:protein2genome:local exon 224723 224761 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224129 224761 479 + . alignment_id 10 ; Query gi|805766339|ref|XP_003700911.2| ; Align 224129 306 111 ; Align 224324 343 111 ; Align 224500 380 156 ; Align 224723 432 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 474 Query range: 62 -> 342 Target range: 274386 -> 275309 63 : SerIleGlnLeuSerArgTrpIleLeuLysProMetGlyLeuTrpProAsnSerSerG : 82 |||:!:||||||!:!||||||.!!|||||||||!!:||| !|||||| :!!||| SerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaSerP 274387 : AGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGC : 274444 83 : luThrSerCysLeuGluLysTyrLeuTyrArgLeuIleAsnValAlaCysTyrLeuLe : 101 |||!!! !!!|||::! !|||! !.!|||::: ||||||! !!! roThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCysPh 274445 : CCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTGCTT : 274501 102 : uIlePheTyrLeuIleIleProCysGlyLeuTyrMetLeuLeuAspMetGluAsnLeu : 120 !|||.!!! ! !:!!|||||| !! !!!!:!!!!::!!|||! |||!:!||| eIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGluSerLeu 274502 : CATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGTCTC : 274558 121 : TyrLysGluIleLysLeuPheGlyProMetIlePheCysValAlaAlaPheValLysT : 140 :!! !:!!:!:||||||.!!||||||:!: ! !!! !! !!.! :!!!!.| HisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnT 274559 : CATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATT : 274618 141 : yrHisTrpLeuIleLeuHisGlyAspAspIleArgGluCysMetGluHisIleLysTr : 159 || ! !|||:!:|||!.!.!! ! !!:||||||! |||:!!||||||!!::!! yrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnTh 274619 : ACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAAC : 274675 160 : pAspTrpLysAsnValGluTyrPheLysAspLysAspIleMetSerValAsnAlaAsn : 178 ||||||!:!! !||| :!!|||:!!.!.:!:|||! ! !||||||!!. rAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsnAlaLys 274676 : AGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAG : 274732 179 : PheGlyLysArgIleValThrValCysAlaLeuPheMetPheThrAlaCysThrPheT : 198 .!!|||::: !:!!!.!! ! !!|||||| !|||||| !!.! ! !! !| IleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuCysT 274733 : ATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTT : 274792 199 : yrPheLeuIleIleProLeuAsnLeuArgArgIleAlaThrAspAsnValSerPheIl : 217 ||! !:!!|||! ! !!!!!!.!:!!!:!! !:!! !..!! |||! !!!! ! yrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrArgTh 274793 : ATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAAC : 274849 218 : eProValMetTyrProPheSer<-><->LysHisIleValAspIleArgTyrSerPro : 234 ! ! !|||! |||! !!.! ||| ! ||||||! :!: ! |||||| rValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThrSerPro 274850 : CGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCG : 274906 235 : ValAsnGluIleValPheSerIleGlnPheValAlaGlyValLeuIleAsnAlaIleT : 254 ..!||||||||||||.!!:!! |||||||||:!!||| !!:!!:!:|||:!!! !. ThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerSerA 274907 : ACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCG : 274966 255 : hrValGlySerCysSerLeuAlaAlaValLeuAlaValHisAlaCysGlyGlnMetGl : 273 !!||||||:!!! !|||||||||||||||!!!|||!.!||||||! !||||||:!!.. laValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSe 274967 : CGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAG : 275023 274 : uValLeuMetArgTrpLeuGluHisLeuValAspGlyArgSerAspMetSerGluSer : 292 .|||||||||! !|||:!! .!.!!!|||:!! ! !!!!|||...::::::::: rValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsnLysAsn 275024 : CGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaaaat : 275080 293 : Val<->AspHisArgIleAlaLysValIleSerGlnHisValArgIleLeu{Ly} > : 309 ||| !..!|||!.! !|||:!!..!!!.|||:!!|||:!!|||{!.} ValTyrPheSerGluIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 275081 : gtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTC{AG}gt. : 275138 310 : >>> Target Intron 1 >>>> {s}PheLeuAlaLeuThrGluLysThrPheLy : 319 74 bp {.}|||:!!|||! !! !||| ! ..!.!.!! ++{r}PheIleAlaArgIleGluAspValMetAs 275139 : ........................ag{T}TTCATAGCACGTATCGAGGATGTGATGAA : 275238 320 : sGlnIleSerPheAlaGluPheLeuAlaCysValLeuAsnLeuCysLeuValGlyTyr : 338 .!:!|||!!!||| !|||!!.!!! !|||..!|||:!!:!!|||:!!:!!|||||| nArgIleCysPheMetGluLeuPheLysCysThrLeuAspMetCysMetLeuGlyTyr 275239 : TCGAATATGCTTCATGGAATTGTTCAAGTGTACTCTGGATATGTGCATGCTTGGCTAT : 275295 339 : TyrIleIleThr : 342 ||||||:!!||| TyrIleLeuThr 275296 : TACATTCTCACG : 275309 vulgar: gi|805766339|ref|XP_003700911.2| 62 342 . KQ414889.1 274386 275309 + 474 M 162 486 G 0 6 M 69 207 G 0 3 M 15 45 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274387 275309 474 + . gene_id 11 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274387 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274387 275135 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275309 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275309 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274387 275309 474 + . alignment_id 11 ; Query gi|805766339|ref|XP_003700911.2| ; Align 274387 63 486 ; Align 274879 225 207 ; Align 275089 294 45 ; Align 275211 310 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 457 Query range: 63 -> 309 Target range: 200544 -> 203155 64 : IleGlnLeuSerArgTrpIleLeuLysProMetGlyLeuTrpProAsnSerSerGluT : 83 ||||||! !!:!||||||||||||||| !!|||!.!|||||| !:!!!.!|||.!.! IleGlnTrpAsnArgTrpIleLeuLysSerMetAlaLeuTrpPheAspLysSerAsnI 200545 : ATACAGTGGAATCGTTGGATCTTGAAATCAATGGCTTTGTGGTTTGACAAATCCAACA : 200602 84 : hrSerCysLeuGluLysTyrLeuTyr-ArgLeuIleAsnValAlaCysTyrLeuLeuI : 102 !||| :!!||||||!! |||:!!#|||||||||!:!!.!!.!|||!! !|||! leSerProValGluLys***LeuHis#ArgLeuIleSerAlaValCys***GlyLeuM 200603 : TTTCACCGGTCGAGAAATAACTACACTCGGCTAATCAGTGCCGTTTGTTAAGGATTGA : 200660 103 : lePheTyrLeuIleIleProCysGlyLeuTyrMetLeuLeuAspMetGluAsnLeuTy : 121 !: |||...:::||| |||.!!|||:!!:!!!!!||||||:!:||||||:!! etGlyTyrPheLeuIleLeuCysSerLeuHisValPheLeuAspValGluAsnIleLe 200661 : TGggttactttttaatattatgcAGTTTACACGTGTTTCTTGACGTAGAAAATATACT : 200717 122 : rLysGluIleLysLeuPheGlyProMetIle<->PheCysValAlaAlaPheValLys : 139 !|||:!!||||||||||||! !|||:!::!! .!!|||:!!|||.!!.!!:!!||| uLysLysIleLysLeuPheValProLeuValLeuLeuCysLeuAlaThrIleLeuLys 200718 : TAAAAAGATTAAATTGTTTGTTCCCCTAGTACTACTTTGCTTGGCTACGATTTTGAAG : 200774 140 : TyrHisTrpLeuIleLeuHisGlyAspAspIleArgGluCysMetGluHisIleLysT : 159 ! !|||! !! !:!!||||||! !||||||! ! ! !||| ||||||||||||| CysHisLeuSerValLeuHisAspAspAspThrTyrThrCysGlyGluHisIleLysT 200775 : TGTCATTTGTCGGTACTTCATGATGACGATACTTACACGTGTGGCGAGCATATAAAAT : 200834 160 : rpAspTrpLysAsn<->ValGluTyrPheLysAspLysAspIleMetSerValAsnAl : 177 ||!!:|||!:! !! ||| !:!! !:::|||||| ||| ... !..!! rpGluTrpArgTyrCysValThrHisAspGluAspLysLysIleArgAspLysArgAs 200835 : GGGAGTGGAGGTATTGTGTCACGCACGACgaggataaaaaaattagagataAACGTGA : 200891 178 : aAsnPheGlyLysArgIleValThrValCysAlaLeuPheMet >>>> Target I : 192 ! !!!. !! ! ! !||| !! ... ...||| 1681 pLeuLeuCysLeuLeuHisValGlnGlyAlaLysLysLeuMet++ 200892 : TCTTTTGTGCCTTCTGCATGTACAGGgtgcaaaaaaattaatggt............. : 200938 193 : ntron 1 >>>> PheThrAlaCysThrPheTyrPheLeuIleIleProLeuAsnLe : 206 bp ! !|||! ||||||||||||...:::::: !!|||..!|| -+CysThrAspPheThrPheTyrPhePheValValSerLeuGlyLe 200939 : ............tgTGCACAGattttaccttttatttttttgttgtaTCGCTTGGCTT : 202659 207 : uArgArgIleAlaThrAspAsnValSerPheIleProValMetTyrProPheSerLys : 225 |..!!:!!!:!.!.!!!!::!!:!!||| |||! !!:! !!|||||| ! uGluLysMetValAlaGluAspLeuSer---------ValThrPheSerPheSerGly 202660 : GGAGAAAATGGTAGCAGAGGATCTTAGT---------GTGACGTTCTCCTTCTCAGGA : 202707 226 : HisIleValAspIleArgTyrSerProValAsnGluIleValPheSerIleGlnPheV : 245 !|||:!!|||:!!|||||||||||||||||||||||| !!|||||||||!:!.!!| PheIleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleV 202708 : TTTATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCG : 202767 246 : alAlaGlyValLeuIleAsnAlaIleThrValGlySerCysSerLeuAlaAlaValLe : 264 |||||! !:!!||||||:!!!.!:!!|||||||||:!!|||!!!|||.!!|||:!!!! alAlaValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPh 202768 : TAGCTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTT : 202824 265 : uAlaValHisAlaCysGlyGlnMetGluValLeuMetArgTrpLeuGluHisLeuVal : 283 !|||||||||! !||||||||||||!!:||||||||| !|||||||||||||||:!! eAlaValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMet 202825 : TGCGGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATG : 202881 284 : AspGlyArgSerAspMetSerGlu >>>> Target Intron 2 >>>> SerVa : 293 |||||||||||||||||||||:!! 194 bp !:!|| AspGlyArgSerAspMetSerLys-+ +-AsnVa 202882 : GATGGTCGTTCGGATATGAGTAAAat.........................aaAATGT : 203105 294 : lAspHisArgIleAlaLysValIleSerGlnHisValArgIleLeuLys : 309 |:!! !|||!!:!.!! :!!:!:|||||||||:!!|||||||||||| lAsnGlyArgMetValThrIleValSerGlnHisIleArgIleLeuLys 203106 : GAATGGCAGAATGGTGACCATCGTGAGCCAACACATACGGATACTGAAA : 203155 vulgar: gi|805766339|ref|XP_003700911.2| 63 309 . KQ414889.1 200544 203155 + 457 M 28 84 F 0 1 M 40 120 G 0 3 M 32 96 G 0 3 M 28 84 5 0 2 I 0 1677 3 0 2 M 24 72 G 3 0 M 73 219 5 0 2 I 0 190 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 200545 203155 457 + . gene_id 12 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 200545 200935 . + . KQ414889.1 exonerate:protein2genome:local exon 200545 200935 . + . insertions 6 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local splice5 200936 200937 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 200936 202616 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 202615 202616 . + . intron_id 0 ; splice_site "tg" KQ414889.1 exonerate:protein2genome:local cds 202617 202907 . + . KQ414889.1 exonerate:protein2genome:local exon 202617 202907 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 202908 202909 . + . intron_id 2 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 202908 203101 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 203100 203101 . + . intron_id 1 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 203102 203155 . + . KQ414889.1 exonerate:protein2genome:local exon 203102 203155 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 200545 203155 457 + . alignment_id 12 ; Query gi|805766339|ref|XP_003700911.2| ; Align 200545 64 84 ; Align 200630 92 120 ; Align 200753 132 96 ; Align 200852 164 84 ; Align 202617 192 72 ; Align 202689 219 219 ; Align 203102 292 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 447 Query range: 50 -> 313 Target range: 232426 -> 233221 51 : GlnGluSerIleGluGlnSerGluAsnValAsnArgSerIleGlnLeuSerArgTrpI : 70 !::!!:!!!:!:.!. !!!..!:!! !.!. !|||||||||:!!!:!||||||. ArgAspThrLeuAsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpP 232427 : CGCGACACGTTGAACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGT : 232484 71 : leLeuLysProMetGlyLeuTrpProAsnSerSerGluThrSerCysLeuGluLysTy : 89 !!|||! !||||||||| !||||||..! !!!!||||||||| ! !:!!:!! heLeuThrProMetGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLe 232485 : TTCTGACACCGATGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACT : 232541 90 : rLeuTyrArgLeuIleAsnValAlaCysTyrLeuLeuIlePheTyrLeuIleIlePro : 108 ||| !:!|||:!:!..:!!.!!|||:!!! !|||!!:.!!! !! !|||:!!||| uLeuAlaLysLeuLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValPro 232542 : ACTCGCGAAACTGTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCG : 232598 109 : CysGlyLeuTyrMetLeuLeuAspMetGluAsnLeuTyrLysGluIleLysLeuPheG : 128 ||| !|||!:!!!:|||!!!!!: !!:!||| ! :!!..!!!:|||! !.!!| CysIleLeuPheIleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleG 232599 : TGCATTCTGTTCATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCG : 232658 129 : lyProMetIlePheCysValAlaAlaPheValLysTyrHisTrpLeuIleLeuHisGl : 147 ||||||||! ! !! !:!! !!.! :!!!!.||| !!! |||:!: ! ! !. lyProMetSerHisPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAl 232659 : GTCCTATGAGTCACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGC : 232715 148 : yAspAspIleArgGluCysMetGluHisIleLysTrpAspTrpLysAsnValGluTyr : 166 !:!!||||||! ! ! |||:!!|||!!.:!:||| !||||||::!||||||:!! ! aAsnAspIleLeuTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLys 232716 : GAACGACATCCTCTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAA : 232772 167 : PheLysAspLysAspIleMetSerValAsnAlaAsnPheGlyLysArgIleValThrV : 186 ! !!:::|||:!:|||! ! !||||||!!..!!|||::: !|||!.! !: ProValHisArgAspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysI 232773 : CCCGTCCATCGTGATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCA : 232832 187 : alCysAlaLeuPheMetPheThrAlaCysThrPheTyrPheLeuIleIleProLeuAs : 205 !!..!|||!!!! !||| !|||!.! ! !! ! !! :!!:!!! ! !|||.. leAlaAlaPheCysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuAr 232833 : TCGCTGCGTTTTGCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCG : 232889 206 : nLeuArgArg<-><->IleAlaThrAspAsnValSerPheIleProValMetTyrPro : 222 !:!!!!!! ! :!:!.!!.!!!:!:! !|||.!. !|||:!! ! ! !! gMetSerThrPheTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThr 232890 : TATGAGCACGTTCTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACG : 232946 223 : PheSerLysHisIleValAspIleArgTyrSerProValAsnGluIleValPheSerI : 242 |||! !! ! ! :!::!!|||! !|||!:!||||||..!|||||||||:!!||| !: PheTyrThrLysLeuMetAspThrArgPheSerProThrAsnGluIleMetPheValL 232947 : TTCTACACGAAGCTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTC : 233006 243 : leGlnPheValAlaGlyValLeuIleAsnAlaIleThrValGlySerCysSerLeuAl : 261 !!|||! !:!!:!!||| !!:!!:!:|||:!!:!!|||||||||:!!|||.!!|||!. euGlnCysLeuSerGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGl 233007 : TACAGTGTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGG : 233063 262 : aAlaValLeuAlaValHisAlaCysGlyGlnMetGluValLeuMetArgTrpLeuGlu : 280 !||||||||||||:!!|||||||||||||||:!!.!.|||:!!||| ! |||!!: yAlaValLeuAlaMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAsp 233064 : CGCTGTTCTAGCGATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGAC : 233120 281 : HisLeuValAspGlyArgSerAspMetSerGluSerValAspHisArgIleAlaLysV : 300 !!|||||||||!.!!:!.!!.!. !..!..! !!.!.!....!:!:!!!.! : AspLeuValAspAlaLysGlyGlnGluGluArgValAlaGlnArgLysLeuGlyPheI 233121 : GATTTGGTGGACGCGAAAGGGCAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCA : 233180 301 : alIleSerGlnHisValArgIleLeuLysPheLeuAlaLeu : 313 !!:!:..!!!.|||:!!|||! !|||!:!!:!|||:!!:!! leValGluHisHisLeuArgThrLeuArgTyrLeuSerVal 233181 : TCGTGGAGCATCATTTGCGTACATTAAGGTATTTGTCTGTG : 233221 vulgar: gi|805766339|ref|XP_003700911.2| 50 313 . KQ414889.1 232426 233221 + 447 M 158 474 G 0 6 M 105 315 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232427 233221 447 + . gene_id 13 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232427 233221 . + . KQ414889.1 exonerate:protein2genome:local exon 232427 233221 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232427 233221 447 + . alignment_id 13 ; Query gi|805766339|ref|XP_003700911.2| ; Align 232427 51 474 ; Align 232907 209 315 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 437 Query range: 62 -> 309 Target range: 266640 -> 267390 63 : SerIleGlnLeuSerArgTrpIleLeuLysProMetGlyLeuTrpProAsnSerSerG : 82 |||:!:||||||!:!||||||.!!|||||||||!!:||| !|||||| ! !||| SerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerL 266641 : AGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCAC : 266698 83 : luThrSerCysLeuGluLysTyrLeuTyrArgLeuIleAsnValAlaCysTyrLeuLe : 101 |||||| ||||||::! !:!!! ! ! !:!:! !||| !||||||! !! euThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSe 266699 : TCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTC : 266755 102 : uIlePheTyrLeuIleIleProCysGlyLeuTyrMetLeuLeuAspMetGluAsnLeu : 120 !|||.!.!:! !:!!||||||||| !!!!:!!:!::!!|||!!: |||!:!:!! rIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIle 266756 : CATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATC : 266812 121 : TyrLysGluIleLysLeuPheGlyProMetIlePheCysValAlaAlaPheValLysT : 140 !! !:!!:!:|||:!!|||||||||:!!! ! !!! !!!.!!.! :!!!!.| ArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnT 266813 : CGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACT : 266872 141 : yrHisTrpLeuIleLeuHisGlyAspAspIleArgGluCysMetGluHisIleLysTr : 159 || ! |||:!:|||!.!.!! ! !!:||||||! |||:!:||||||!!::!! yrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnTh 266873 : ACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAAC : 266929 160 : pAspTrpLysAsnValGluTyrPheLysAspLysAspIleMetSerValAsnAlaAsn : 178 ||||||!:!! !||| :!!||||||.!.:!:|||! ! !||||||!.. rAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArg 266930 : AGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGG : 266986 179 : PheGlyLysArgIleValThrValCysAlaLeuPheMetPheThrAlaCysThrPheT : 198 .!!|||::: !|||!.!! ! !!|||||| !|||||| !!.! ! ! !| IleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyT 266987 : ATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCT : 267046 199 : yrPheLeuIleIleProLeuAsnLeuArgArgIleAlaThrAspAsnValSerPheIl : 217 ||! !:!!|||! !!!!!!.!:!!!:!! !:!:! !..!! !|||! !!!! || yrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIl 267047 : ACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGAT : 267103 218 : eProValMetTyrProPheSer<-><->LysHisIleValAspIleArgTyrSerPro : 234 | ! !:!!! |||! !:!! ||| ! !!::!!! :!! ! !|||||| eValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerPro 267104 : CGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCG : 267160 235 : ValAsnGluIleValPheSerIleGlnPheValAlaGlyValLeuIleAsnAlaIleT : 254 ..!||||||||||||.!! ! !|||||||||:!!||| !!:!!:!:|||:!!! !. ThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerV 267161 : ACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCG : 267220 255 : hrValGlySerCysSerLeuAlaAlaValLeuAlaValHisAlaCysGlyGlnMetGl : 273 .!||||||:!!! !|||||||||||||||!!!|||!.!|||||||||||||||:!!.. alValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSe 267221 : TCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAG : 267277 274 : uValLeuMetArgTrpLeuGluHisLeuValAspGlyArgSerAspMetSerGluSer : 292 .|||||||||! !|||:!!:!!.!.!!!|||:!! !! !!!!|||! !:!:!!!:! rValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsn 267278 : CGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAAC : 267334 293 : Val<->AspHisArgIleAlaLysValIleSerGlnHisValArgIleLeuLys : 309 ||| ! !!!:!|||!.! !|||:!!..!!!.|||:!!|||:!!|||!:! ValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeuArg 267335 : GTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGAGG : 267390 vulgar: gi|805766339|ref|XP_003700911.2| 62 309 . KQ414889.1 266640 267390 + 437 M 162 486 G 0 6 M 69 207 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266641 267390 437 + . gene_id 14 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266641 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266641 267390 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266641 267390 437 + . alignment_id 14 ; Query gi|805766339|ref|XP_003700911.2| ; Align 266641 63 486 ; Align 267133 225 207 ; Align 267343 294 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 428 Query range: 62 -> 309 Target range: 262852 -> 263602 63 : SerIleGlnLeuSerArgTrpIleLeuLysProMetGlyLeuTrpProAsnSerSerG : 82 |||:!:|||:!!!:!||||||:!:|||||||||!!:||| !|||||| |||:!!. SerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerAlaS 262853 : AGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCGCCT : 262910 83 : luThrSerCysLeuGluLysTyrLeuTyrArgLeuIleAsnValAlaCysTyrLeuLe : 101 .!! !||| ! :!!|||::! !:!!!:: !|||:!!! !|||!.!||||||! !|| erIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCysLe 262911 : CGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTGTCT : 262967 102 : uIlePheTyrLeuIleIleProCysGlyLeuTyrMetLeuLeuAspMetGluAsnLeu : 120 ||||.!.! ! !:!!||||||! ! !|||:!!!!::!!|||!!: ||||||!!! uIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsnPhe 262968 : CATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAATTTC : 263024 121 : TyrLysGluIleLysLeuPheGlyProMetIlePheCysValAlaAlaPheValLysT : 140 :!!! !:!!:!::!!:!!.!!||||||:!: ! !! !!!.!!.!.!.:!!!!.| HisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleAsnT 263025 : CATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCAATT : 263084 141 : yrHisTrpLeuIleLeuHisGlyAspAspIleArgGluCysMetGluHisIleLysTr : 159 || !||||||:!:||||||.!! ! ||||||!:!! |||:!!:!!|||:!::!! yrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGlnGl 263085 : ACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCAGGA : 263141 160 : pAspTrpLysAsnValGluTyrPheLysAspLysAspIleMetSerValAsnAlaAsn : 178 |||||| ! !||| !!.:!!|||:!! !|||||| ! !||||||!!. uAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAlaLys 263142 : AGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCGAAA : 263198 179 : PheGlyLysArgIleValThrValCysAlaLeuPheMetPheThrAlaCysThrPheT : 198 !:!|||::: !:!:!.!.!! !||||||:!!|||||| |||::! !! !! ! TyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetCysL 263199 : TACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGTGCA : 263258 199 : yrPheLeuIleIleProLeuAsnLeuArgArgIleAlaThrAspAsnValSerPheIl : 217 ! ! !|||:!!! ! !!!!!!.! !!:! !|||! ! !! !|||! !!!! || ysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrArgIl 263259 : AGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAGAAT : 263315 218 : eProValMetTyr<-><->ProPheSerLysHisIleValAspIleArgTyrSerPro : 234 |! ! !||| ||| ! ! !|||.!.|||:!! :!! ! !:!||| eLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThrAsnPro 263316 : TCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAATCCG : 263372 235 : ValAsnGluIleValPheSerIleGlnPheValAlaGlyValLeuIleAsnAlaIleT : 254 ..!||||||||| !!.!!:!!! ||||||:!!:!!||| !!:!!:!!!.!|||! !| ThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaThrT 263373 : ACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGACAA : 263432 255 : hrValGlySerCysSerLeuAlaAlaValLeuAlaValHisAlaCysGlyGlnMetGl : 273 ||||||||:!!! !.!!:!!.!!||||||!!!|||! !|||||||||||||||:!!.! hrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLeuAs 263433 : CTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTTGAA : 263489 274 : uValLeuMetArgTrpLeuGluHisLeuValAspGlyArgSerAspMetSerGluSer : 292 .||||||||| !|||:!! !.!.!!!|||:!! ! !!!!||| !!:!:!!!:! nValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLysAsn 263490 : CGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAGAAT : 263546 293 : ValAspHis<->ArgIleAlaLysValIleSerGlnHisValArgIleLeuLys : 309 :!! !! ! ..!|||!.! !:!!:!!..!!!.|||:!!|||:!!|||!:! LeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeuArg 263547 : CTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTGAGG : 263602 vulgar: gi|805766339|ref|XP_003700911.2| 62 309 . KQ414889.1 262852 263602 + 428 M 159 477 G 0 6 M 74 222 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262853 263602 428 + . gene_id 15 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262853 263602 . + . KQ414889.1 exonerate:protein2genome:local exon 262853 263602 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262853 263602 428 + . alignment_id 15 ; Query gi|805766339|ref|XP_003700911.2| ; Align 262853 63 477 ; Align 263336 222 222 ; Align 263561 296 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 351 Query range: 58 -> 309 Target range: 289726 -> 290482 59 : AsnValAsnArgSerIleGlnLeuSerArgTrpIleLeuLysProMetGlyLeuTrpP : 78 :!!:!!..! !!!!.!!:!!|||!!!!.!|||||||||||||||!!:|||:!!!::| AspIleArgTyrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrP 289727 : GACATACGTTACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATC : 289784 79 : ro<->AsnSerSerGluThrSerCysLeuGluLysTyrLeuTyrArgLeuIleAsnVa : 96 || !! !|||....!!||| ! ! !|||::! !! !|||:!:! !:! roPheValPheSerArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLe 289785 : CTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCT : 289841 97 : lAlaCysTyrLeuLeuIlePheTyrLeuIleIleProCysGlyLeuTyrMetLeuLeu : 115 !!.!|||! !! !:!!:!! !:!:!!|||:!!|||! !.!!! !:!!:!:|||!!! uValCysCysSerIleLeuGlnPheIleIleValProPheSerHisHisValLeuPhe 289842 : GGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTC : 289898 116 : AspMetGluAsnLeuTyrLysGluIleLysLeuPheGlyProMetIlePheCysValA : 135 ..! .!.:!!:!! !!! ! :!!||| !.!!||||||:!!! ||||||:!!. SerAspAsnAspMetAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuT 289899 : AGCGACAACGACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGA : 289958 136 : laAlaPheValLysTyrHisTrpLeuIleLeuHisGlyAspAspIleArgGluCysMe : 154 !!.!!||| !!|||||| !!::!!!! !:!! ! |||...! ||| !!...|||:! hrThrPhePheLysTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysVa 289959 : CCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGT : 290015 155 : tGluHisIleLysTrpAspTrpLysAsnValGluTyrPheLysAspLysAspIleMet : 173 !:!!||||||:!! ! |||||||||! :!!... !! ! !!:::! !|||||| lLysHisIleGluArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMet 290016 : GAAACACATCGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATG : 290072 174 : SerValAsnAlaAsnPheGlyLysArgIleValThrValCysAlaLeuPheMetPheT : 193 ! ! !!!.!!...!..!!::!!.!:!!:!!! !:!!||||||:!!|||:!!!:!! LeuArgTyrValThrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrI 290073 : CTCAGATACGTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACA : 290132 194 : hrAlaCysThrPheTyrPheLeuIleIleProLeuAsnLeuArgArgIleAlaThrAs : 212 !!.! !! !! !||| ! !:!!||||||||| !! !!:!!:!! !!.!!.!! leGlyGlyLeuSerTyrAsnThrValIleProLeuPheSerLysLysSerValAsnGl 290133 : TAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGG : 290189 213 : pAsnValSerPheIleProValMetTyrProPheSerLysHisIleValAspIleArg : 231 !||||||!!!.!!! !|||:!!! |||||| !! !:!!.!..!! !!|||:!!!:! yAsnValThrIleArgProLeuThrTyrProGlyTyrGluGluPhePheAspValGln 290190 : TAACGTGACTATCAGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAG : 290246 232 : TyrSerProValAsnGluIleValPheSerIleGlnPheValAlaGlyValLeuIleA : 251 ! ||||||!.! !!||||||||||||!!!!!:!!.! !||| !! !:!!:!!! LysSerProAlaTyrGluIleValPheCysMetHisCysValTyrValMetIleThrA 290247 : AAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGG : 290306 252 : snAlaIleThrValGlySerCysSerLeuAlaAlaValLeuAlaValHisAlaCysGl : 270 !||||||:!!!.!:!!! !||||||.!!.!!:!!!!!|||..!|||.!!||||| laAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGl 290307 : CGAACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGG : 290363 271 : yGlnMetGluValLeuMetArgTrpLeuGluHisLeuValAspGlyArgSerAspMet : 289 ||||!!::!!:!!! !! !! ! !!|||||| !!|||..! ! !! !!! ! :!! yGlnIleLysIleGlnThrThrArgLeuGluAspLeuThrLysArgGlyMetLeuLeu 290364 : TCAGATTAAGATACAAACGACGCGGCTGGAGGATCTGACAAAGAGAGGGATGCTGTTG : 290420 290 : SerGluSerValAspHisArgIleAlaLysValIleSerGlnHisValArgIleLeuL : 309 ..!:!!.!!|||..! !!|||:!:||| |||:!:||| ||||||..!||||||| GluLysGlyValSerAspArgLeuAlaValValValSerGlyHisValGluIleLeuL 290421 : GAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTGTGAGCGGTCACGTGGAGATCTTGA : 290480 310 : ys : 309 || ys 290481 : AG : 290482 vulgar: gi|805766339|ref|XP_003700911.2| 58 309 . KQ414889.1 289726 290482 + 351 M 20 60 G 0 3 M 231 693 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289727 290482 351 + . gene_id 16 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289727 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289727 290482 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289727 290482 351 + . alignment_id 16 ; Query gi|805766339|ref|XP_003700911.2| ; Align 289727 59 60 ; Align 289790 79 693 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 322 Query range: 48 -> 309 Target range: 303157 -> 304869 49 : ArgMetGlnGluSerIleGluGlnSerGluAsnValAsnArgSerIleGlnLeuSerA : 68 |||! ! !..!!:!:!:.!. ! !.!:!!:!!:!! ! ! !! !:!!! !|||! ArgLysProArgAsnLeuAsnTyrLysLysAspIleValTyrValThrLysHisSerL 303158 : CGGAAACCGCGGAATTTGAATTACAAGAAAGATATCGTTTACGTTACAAAGCACAGCA : 303215 69 : rgTrpIleLeuLysProMetGlyLeuTrpProAsnSerSerGluThrSerCysLeuGl : 87 :!|||||||||||| !!:!:|||:!!|||||| ! !! !!!: !!!!... ysTrpIleLeuLysSerLeuGlyIleTrpProAlaValLeuAspGluThrAla----- 303216 : AATGGATCCTGAAGTCCCTTGGTATTTGGCCAGCCGTGTTGGACGAAACCGCA----- : 303269 88 : uLysTyrLeuTyrArgLeuIleAsnValAlaCysTyrLeuLeuIlePheTyrLeuIle : 106 !!:!||| !:!:!!! !! !! ! ! !! !!|||:!!:!!!!.!:! !:!: -GlyPheLeuProLysIleThrIleGlyLeuSerAsnLeuValLeuLeuPheThrVal 303270 : -GGATTCCTACCAAAAATCACCATTGGACTCAGTAATTTGGTTCTATTATTCACCGTG : 303323 107 : IleProCysGlyLeuTyrMetLeuLeuAspMetGluAsnLeuTyrLysGluIleLysL : 126 ||||||||| !|||:!!!!::!!!!!!!:...:!!:!! ! ! !..!:!:|||| IleProCysIleLeuHisIleIlePheGluGlnLysAspThrIleIleArgLeuLysL 303324 : ATACCGTGTATTCTACACATAATATTCGAACAAAAGGATACGATAATAAGATTGAAAC : 303383 127 : euPheGlyProMetIlePheCysValAlaAlaPheValLysTyrHisTrpLeuIleLe : 145 ||||||||! !:!!! !||||||:!! !:!!!!.:!!|||||| ||| ! euPheGlyLeuLeuSerPheCysLeuIleSerLeuMetLysTyrTrpAlaLeuAlaTh 303384 : TATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTTGATGAAGTATTGGGCCCTCGCCAC : 303440 146 : uHisGlyAspAspIleArgGluCysMetGluHisIleLysTrpAspTrpLysAsnVal : 164 !!.. ! |||!:!||||||!!:|||.!.:!::!! ! |||||||||.!.||| rArgLysProArgIleLysGluCysIleGluGluValGlnSerAspTrpLysGluVal 303441 : GCGGAAACCAAGGATCAAAGAATGTATAGAAGAGGTGCAAAGTGATTGGAAAGAGGTG : 303497 165 : GluTyrPhe{Ly} >>>> Target Intron 1 >>>> {s}AspLysAspIleM : 173 ... !! !{! } 938 bp {!}|||:::!!:!!:| SerValCys{Il}-- ++{e}AspArgGluMetM 303498 : AGTGTTTGC{AT}tc.........................ag{A}GATCGTGAAATGA : 304462 174 : etSerValAsnAlaAsnPheGlyLysArgIleValThrValCysAlaLeuPheMetPh : 192 || ! ! !!!.!.!..!.|||::!!.!:!:..!! !:!!||||||:!!||||||!: etLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTy 304463 : TGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTA : 304519 193 : eThrAlaCysThrPheTyrPheLeuIleIleProLeuAsnLeuArgArgIleAlaThr : 211 !|||!.! !!|||.!!||| ! !:!!!!:! !!!! ! !!! ! !!.! ! rThrGlyGlyThrIleTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAsp 304520 : TACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGAT : 304576 212 : Asp<->AsnValSerPheIleProValMetTyrProPheSerLysHisIleValAspI : 230 !!: ||| !!!!.!!! !|||:!!:!:|||||| !! !!.. !:!! !!|||: GluTyrAsnArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspV 304577 : GAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACG : 304636 231 : leArgTyrSerProValAsnGluIleValPheSerIleGlnPheValAlaGlyValLe : 249 !!!:! ||||||:!! !!|||:!:|||!:!! !:!!!!.! !:!!..!||| !:! alGlnThrSerProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrVa 304637 : TTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGT : 304693 250 : uIleAsnAlaIleThrValGlySerCysSerLeuAlaAlaValLeuAlaValHisAla : 268 !||| !!:!!||||||!.!|||:!!|||.!!|||||||||:!!!!!|||..!|||||| lIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAla 304694 : AATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCT : 304750 269 : CysGlyGlnMetGluValLeuMetArgTrpLeuGluHisLeuValAspGlyArgSerA : 288 |||||||||!!:!!::!!:!!||| ! ! |||! !!||||||:!!.!!!:!..! CysGlyGlnIleAspIleValMetSerArgLeuGlyAspLeuValAsnSerLysGlu- 304751 : TGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAA- : 304810 289 : spMetSerGluSerValAspHisArgIleAlaLysValIleSerGlnHisValArgIl : 307 |||.....!:!!||| ! |||:!! !:!!:!!:!!..!!!.|||:!!||||| -----SerSerAspLeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIl 304811 : -----TCATCTGATTTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAAT : 304861 308 : eLeuLys : 309 ||||!:! eLeuArg 304862 : TTTAAGG : 304869 vulgar: gi|805766339|ref|XP_003700911.2| 48 309 . KQ414889.1 303157 304869 + 322 M 37 111 G 2 0 M 80 240 S 0 2 5 0 2 I 0 934 3 0 2 S 1 1 M 44 132 G 0 3 M 75 225 G 2 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303158 304869 322 + . gene_id 17 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303158 303510 . + . KQ414889.1 exonerate:protein2genome:local exon 303158 303510 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 303511 303512 . + . intron_id 1 ; splice_site "TC" KQ414889.1 exonerate:protein2genome:local intron 303511 304448 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304447 304448 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304449 304869 . + . KQ414889.1 exonerate:protein2genome:local exon 304449 304869 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 303158 304869 322 + . alignment_id 17 ; Query gi|805766339|ref|XP_003700911.2| ; Align 303158 49 111 ; Align 303269 88 240 ; Align 304450 169 132 ; Align 304585 213 225 ; Align 304810 290 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 287 Query range: 62 -> 315 Target range: 236855 -> 237617 63 : SerIleGlnLeuSerArgTrpIleLeuLysProMetGlyLeuTrpProAsnSerSerG : 82 |||:!!|||! !!:!|||||| :!!||| !!!:||| !||||||.!.! !||| SerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSer- 236856 : AGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCG- : 236913 83 : luThrSerCysLeuGluLysTyrLeuTyrArgLeuIleAsnValAlaCysTyrLeuLe : 101 ||| !||||||!:! !!:!!! !|||:!!:!!|||||| !|||||| ! -----SerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAl 236914 : -----TCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGC : 236964 102 : uIlePheTyrLeuIleIleProCysGlyLeuTyrMetLeuLeuAspMetGluAsnLeu : 120 !|||.!.!:!! !||||||||||||..!|||:!!:!::!!|||!!:! ! !!.!!!! aIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPhe 236965 : AATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTC : 237021 121 : TyrLysGluIleLysLeuPheGlyProMetIlePheCysValAlaAlaPheValLysT : 140 |||! !:!!:!:|||:!!.!!||| !!:!!! ! !!! ||| !..!.!!:!!!..| TyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerT 237022 : TACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTT : 237081 141 : yrHisTrpLeuIleLeuHisGlyAspAspIleArgGluCysMetGluHisIleLysTr : 159 || ! !|||:!:|||!.. !! ! !||||||.!.! !.!..!.|||!!::!! yrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluTh 237082 : ACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGAC : 237138 160 : pAspTrpLysAsnValGluTyrPheLysAspLysAspIleMetSerValAsnAlaAsn : 178 ||||||!:!!....! ::: |||::::::|||! ! ! !!|||!!. rAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLys 237139 : CGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAA : 237195 179 : PheGlyLysArgIleValThrValCysAlaLeuPheMetPheThrAlaCysThrPheT : 198 |||.!!::! ! !.!! ! !|||.!!:!!|||!!: ! !!.! ! | PheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyT 237196 : TTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGAT : 237255 199 : yrPheLeuIleIleProLeuAsnLeuArgArgIleAlaThrAspAsnValSerPheIl : 217 ||! !:!!!!:! ! !!! !!.! !! ! !:!!!.!..!! ||| !!!! || yrCysValMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIl 237256 : ATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGAT : 237312 218 : e<-><->ProValMetTyrProPheSerLysHisIleValAspIleArgTyrSerPro : 234 | !:!! ! |||.!.! !||| :!!:!! :!! ! !:! !! eLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThr 237313 : CTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACT : 237369 235 : ValAsnGluIleValPheSerIleGlnPheValAlaGlyValLeuIleAsnAlaIleT : 254 :!!|||!!:|||||| !!! ! !||||||:!!:!!||| !!:!! ||| !! !. MetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerA 237370 : ATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTG : 237429 255 : hrValGlySerCysSerLeuAlaAlaValLeuAlaValHisAlaCysGlyGlnMetGl : 273 !!:!!.!! ! ||||||.!!::!!.!|||.!! !||||||! !||||||:!!.. laIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSe 237430 : CGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAG : 237486 274 : uValLeuMetArgTrpLeuGluHisLeuVal<->AspGlyArgSerAspMetSerGlu : 291 .|||:!!||| !! !:!!||| !!!!!||| !!:!.!||| !! !!.!!!: rValValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAsp 237487 : CGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGAC : 237543 292 : SerValAspHisArgIleAlaLysValIleSerGlnHisValArgIleLeuLysPheL : 311 ..! ! ! !!..!||| !!! !:!!:!:..!:!!|||:!!|||:!:||||||! : AspHisPheAspGluIleProThrIleValGluGluHisLeuArgValLeuLys***V 237544 : GATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAG : 237603 312 : euAlaLeuThrGlu : 315 !!..!||| !!!: alCysLeuLeuAsp 237604 : TATGTTTGTTGGAT : 237617 vulgar: gi|805766339|ref|XP_003700911.2| 62 315 . KQ414889.1 236855 237617 + 287 M 19 57 G 2 0 M 134 402 G 0 6 M 66 198 G 0 3 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236856 237617 287 + . gene_id 18 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236856 237617 . + . KQ414889.1 exonerate:protein2genome:local exon 236856 237617 . + . insertions 9 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236856 237617 287 + . alignment_id 18 ; Query gi|805766339|ref|XP_003700911.2| ; Align 236856 63 57 ; Align 236913 84 402 ; Align 237321 218 198 ; Align 237522 284 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 226 Query range: 57 -> 251 Target range: 294675 -> 295263 58 : GluAsnValAsnArgSerIleGlnLeuSerArgTrpIleLeuLysProMetGlyLeuT : 77 .!.:!!||| !.!|||:!!:!!! !!!!||| !!:!:|||||||||!!:||||||| AsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuT 294676 : AACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTT : 294733 78 : rpPro<->AsnSerSerGluThrSerCysLeuGluLysTyrLeuTyrArgLeuIleAs : 95 ||||| ! !! !|||.!.|||||| |||.!.||| !|||! ! !:!!:!:! rpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIl 294734 : GGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGAT : 294790 96 : nValAlaCysTyrLeuLeuIlePheTyrLeuIleIleProCysGlyLeuTyrMetLeu : 114 !!.! !||| ||| !:!!.!.!:!:!!:!!:!:|||||||||! !!:! :!! eAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCysVal 294791 : CGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTA : 294847 115 : LeuAspMetGluAsnLeuTyrLysGluIleLysLeuPheGlyProMetIlePheCysV : 134 !!! !!:!::::|||::: ::!!!:||||||.!.||||||:!::!!!:!! !: PheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerM 294848 : TTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTA : 294907 135 : alAlaAlaPheValLysTyrHisTrpLeuIleLeuHisGlyAspAspIleArgGluCy : 153 !! !:!!.!.:!!!:!||| !!! |||:!!||| ! ! !! .!!!:!.!.|| etLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCy 294908 : TGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTG : 294964 154 : sMetGluHisIleLysTrpAspTrpLysAsnValGluTyrPheLysAspLysAspIle : 172 |!!:||| !!|||:!! ||||||||| :!!!!: !! :!! !!::!! ||| sIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIle 294965 : CATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATC : 295021 173 : MetSerValAsnAlaAsnPheGlyLysArgIleValThrValCysAlaLeuPheMetP : 192 |||! ! !||||||! !! !:!!|||!!:..!..!!.!! !.!!:!!.!.!!:! MetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleIleT 295022 : ATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCT : 295081 193 : heThrAlaCysThrPheTyrPheLeuIleIleProLeuAsnLeuArgArgIleAlaTh : 211 :!!:!:!!.....!! ||| ! !|||:::|||... ... :!:! !!. yrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGluAs 295082 : ACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGAGAA : 295138 212 : rAspAsnValSerPheIleProValMet<->TyrProPheSerLysHisIleValAsp : 229 ! ! !!. !!:! |||! !!.!:!: !||| !! !:!! .!!|||||| nLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheValAsp 295139 : CAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGAC : 295195 230 : IleArgTyrSerProValAsnGluIleValPheSerIleGlnPheValAlaGlyValL : 249 ! !! !||||||..! !!||||||:!! !!! !! |||||| !..! !!! AlaTyrSerSerProThrTyrGluIleIleArgThrHisLeuPheValTyrSerPheP 295196 : GCTTATTCCAGTCCTACCTACGAGATCATAAGAACTCATCTCTTTGTTTACTCGTTCT : 295255 250 : euIleAsn : 251 !!:!!||| heValAsn 295256 : TCGTCAAC : 295263 vulgar: gi|805766339|ref|XP_003700911.2| 57 251 . KQ414889.1 294675 295263 + 226 M 21 63 G 0 3 M 142 426 G 0 3 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294676 295263 226 + . gene_id 19 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294676 295263 . + . KQ414889.1 exonerate:protein2genome:local exon 294676 295263 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294676 295263 226 + . alignment_id 19 ; Query gi|805766339|ref|XP_003700911.2| ; Align 294676 58 63 ; Align 294742 79 426 ; Align 295171 221 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 218 Query range: 379 -> 432 Target range: 219512 -> 219671 380 : CysArgAsnValGlyGlnMetSerTyrMetIleAspTrpTyrArgLeuArgGlyAsnL : 399 ||||||...:::|||:::|||||||||||||||!!:||||||||||||! !|||!!.| CysArgLysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysL 219513 : TGtaggaaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGA : 219570 400 : ysLysLeuPheCysIleLeuIleMetAlaMetSerAsnSerSerIleLysLeuThrAl : 418 ||||||||!:: !!:!!|||! !!!:|||||||||||||||||||||||||||||||| ysLysLeuTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAl 219571 : AAAAGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGC : 219627 419 : aGlyAsnMetValGluLeuSerIleGlyThrPheThrAspVal : 432 |||||||||||||||||||||||||.!!||||||||||||||| aGlyAsnMetValGluLeuSerIleSerThrPheThrAspVal 219628 : CGGAAATATGGTCGAATTGTCTATCAGCACTTTTACCGACGTG : 219671 vulgar: gi|805766339|ref|XP_003700911.2| 379 432 . KQ414889.1 219512 219671 + 218 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219513 219671 218 + . gene_id 20 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219513 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219513 219671 218 + . alignment_id 20 ; Query gi|805766339|ref|XP_003700911.2| ; Align 219513 380 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 218 Query range: 378 -> 432 Target range: 230244 -> 230406 379 : GlnCysArgAsnValGlyGlnMetSerTyrMetIleAspTrpTyrArgLeuArgGlyA : 398 |||||||||!!.||||||:!!! !||||||||||||!!:||||||||||||! !|||| GlnCysArgLysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyA 230245 : CAGTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAA : 230302 399 : snLysLysLeuPheCysIleLeuIleMetAlaMetSerAsnSerSerIleLysLeuTh : 417 |||||||||||! !||||||||||||!!:||||||||||||!!!|||! |||!!!|| snLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheTh 230303 : ACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTAC : 230359 418 : rAlaGlyAsnMetValGluLeuSerIleGlyThrPheThrAspVal : 432 |||||||||||||||||||||||||:!!..!||||||!:!|||||| rAlaGlyAsnMetValGluLeuSerValAsnThrPheSerAspVal 230360 : AGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGACGTA : 230406 vulgar: gi|805766339|ref|XP_003700911.2| 378 432 . KQ414889.1 230244 230406 + 218 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230245 230406 218 + . gene_id 21 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230245 230406 . + . KQ414889.1 exonerate:protein2genome:local exon 230245 230406 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230245 230406 218 + . alignment_id 21 ; Query gi|805766339|ref|XP_003700911.2| ; Align 230245 379 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 203 Query range: 352 -> 432 Target range: 234833 -> 235147 353 : ValGlyTyrValIleLeuTyrThrSerLeuAlaPheAsnIlePheIlePheCysTyrI : 372 ..!..!|||||||||:!!|||..!|||:!!.!!||||||||||||||||||||||||| AlaSerTyrValIleValTyrValSerMetThrPheAsnIlePheIlePheCysTyrI 234834 : gCTTCATACGTCATCGTGTACGTGTCCATGACATTtaatatattcatattttgttACA : 234891 373 : leGlyGluLeuValAlaGluGln >>>> Target Intron 1 >>>> CysArg : 381 |||||||| !:!!.!!|||||| 74 bp |||! ! leGlyGluThrLeuThrGluGln++ ++CysThr 234892 : TCGGAGAGACGCTTACAGAGCAGgt.........................agTGTACC : 234992 382 : AsnValGlyGlnMetSerTyrMetIleAspTrpTyrArgLeuArgGlyAsnLysLysL : 401 !!.||||||:!!! !||||||! !!!:||||||||||||! ! !!!.! | LysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaL 234993 : AAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATAAAACTGCTC : 235052 402 : euPheCysIleLeuIleMetAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAs : 420 || !! :!!:!!|||!!::!!! !|||!:!! ! !||||||:!!|||||||||!! euGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 235053 : TCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCACCGCTGGAAA : 235109 421 : nMetValGluLeuSerIleGlyThrPheThrAspVal : 432 ..!.:!!:!!:!!|||:!!!.!|||||| !|||||| sPheLeuGlnMetSerValAlaThrPheGlyAspVal 235110 : ATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: gi|805766339|ref|XP_003700911.2| 352 432 . KQ414889.1 234833 235147 + 203 M 27 81 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234834 235147 203 + . gene_id 22 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234834 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234834 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234834 235147 203 + . alignment_id 22 ; Query gi|805766339|ref|XP_003700911.2| ; Align 234834 353 81 ; Align 234989 380 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 200 Query range: 342 -> 432 Target range: 206050 -> 206401 343 : GluTrpAsnSerLysAsnIleThrIleThrValGlyTyrValIleLeuTyrThrSerL : 362 ||||||.!.!:!!!.|||! !||| ..!:!!! !|||:!!! ||| ! ! !|||! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 363 : euAlaPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln >>> : 380 !.!!||| !:!!||||||.!.||||||||||||:!!|||:!! !!!:||| ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 381 : > Target Intron 1 >>>> CysArgAsnValGlyGlnMetSerTyrMetIleA : 391 81 bp !!.! !|||||| !! |||! !! !:!:: ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 392 : spTrpTyrArgLeuArgGlyAsnLysLysLeuPheCysIleLeuIleMetAlaMetSe : 410 !!||||||||||||! !..!!.. ! !! !! ! |||||||||!!:|||||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 411 : rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleGlyThrPhe : 429 ||||! ! !!||||||||||||||||||!!.||| !!|||:!!|||:!!!.!!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 430 : ThrAspVal : 432 ||||||||| ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: gi|805766339|ref|XP_003700911.2| 342 432 . KQ414889.1 206050 206401 + 200 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 200 + . gene_id 23 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 200 + . alignment_id 23 ; Query gi|805766339|ref|XP_003700911.2| ; Align 206051 343 111 ; Align 206243 380 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 194 Query range: 338 -> 432 Target range: 305088 -> 305783 339 : TyrIleIleThrGluTrpAsnSerLysAsnIleThrIleThrValGlyTyrValIleL : 358 |||::: !!!:|||.!.|||!..|||! !..!! ! !..! !|||..!:!:| TyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValL 305089 : tatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGT : 305146 359 : euTyrThrSerLeuAlaPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAl : 377 || ! !|||:!!.!!|||||||||||||||!!.|||||||||||||||:!!:!! euLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMe 305147 : TACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTAT : 305203 378 : aGluGln >>>> Target Intron 1 >>>> CysArgAsnValGlyGlnMetS : 387 !|||:!! 413 bp !!!!!!:!|||||| ! ! tGluLys++ ++SerSerSerValGlyLeuSerC 305204 : GGAAAAGgt.........................agAGCAGTAGCGTTGGATTATCCT : 305646 388 : erTyrMetIleAspTrpTyrArgLeuArgGlyAsnLysLysLeuPheCysIleLeuIl : 406 !!!:!||||||..!||||||!.!|||! ! !!!.! !! !! ! ! !|||||||| ysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleLeuIl 305647 : GTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTTTAAT : 305703 407 : eMetAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSer : 425 |!!:|||||||||!:!!:! !! !|||:!!!:!||||||!!.:!:|||!!:|||||| eIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysValValAspLeuSer 305704 : CATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTATCT : 305760 426 : IleGlyThrPheThrAspVal : 432 :!!..!|||||| !:!!||| LeuSerThrPheGlyAsnVal 305761 : TTATCCACATTTGGAAACGTG : 305783 vulgar: gi|805766339|ref|XP_003700911.2| 338 432 . KQ414889.1 305088 305783 + 194 M 41 123 5 0 2 I 0 409 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305089 305783 194 + . gene_id 24 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305089 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305089 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305089 305783 194 + . alignment_id 24 ; Query gi|805766339|ref|XP_003700911.2| ; Align 305089 339 123 ; Align 305625 380 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 187 Query range: 342 -> 432 Target range: 277371 -> 277713 343 : GluTrpAsnSerLysAsnIleThrIleThrValGlyTyrValIleLeuTyrThrSerL : 362 ||||||::!..!!..:!!:!! !! !! !..! !:!! !!!!::!! !! !|||: GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 363 : euAlaPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln >>> : 380 !:...|||||||||||| ! ! |||||||||||||||:!!:!!.!!|||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 381 : > Target Intron 1 >>>> CysArgAsnValGlyGlnMetSerTyrMetIleA : 391 72 bp |||!:!!!.||||||:!!:!! !||||||! : ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 392 : spTrpTyrArgLeuArgGlyAsnLysLysLeuPheCysIleLeuIleMetAlaMetSe : 410 !!|||||| !|||! !! !!!. ! ! ||| !! :!!||||||!!::!!! || snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 411 : rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleGlyThrPhe : 429 |!:! ||||||:::|||||||||...::::::::::::|||:!: !|||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 430 : ThrAspVal : 432 !|||||| GlyAspVal 277703 : GGCGATGTA : 277713 vulgar: gi|805766339|ref|XP_003700911.2| 342 432 . KQ414889.1 277371 277713 + 187 M 37 111 5 0 2 I 0 68 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277713 187 + . gene_id 25 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277713 187 + . alignment_id 25 ; Query gi|805766339|ref|XP_003700911.2| ; Align 277372 343 111 ; Align 277555 380 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 56 -> 160 Target range: 299674 -> 299989 57 : SerGluAsnValAsnArgSerIleGlnLeuSerArgTrpIleLeuLysProMetGlyL : 76 ..!.!.:!!:!!:!! !!!!:!:|||:!!!!!!:!|||:!:|||||||||!!:|||: GlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyV 299675 : CAAAATGACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAG : 299732 77 : euTrpPro<->AsnSerSerGluThrSerCysLeuGluLysTyrLeuTyrArgLeuIl : 94 !!|||! ! ..!..!...:!!||| |||||| ! !:!!! ! !:!!:! alTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuValSerIleValLe 299733 : TATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCT : 299789 95 : eAsnValAlaCysTyrLeuLeuIlePheTyrLeuIleIleProCysGlyLeuTyrMet : 113 !! ..! !|||!:!! ! !:!:|||!:!:!!:!!:!:|||! !|||! !|||!!: uMetThrIleCysPheSerSerLeuPhePheIleValLeuProSerGlyHisTyrIle 299790 : CATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATC : 299846 114 : LeuLeuAspMetGluAsnLeuTyrLysGluIleLysLeuPheGlyProMetIlePheC : 133 !!!!!!! !:!!!:!:!!:!! :!!:!:|||:!!|||||||||:!: !|||| PhePheAlaGluLysSerIleHisValLysValLysValPheGlyProValGlyPheC 299847 : TTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTT : 299906 134 : ysValAlaAlaPheValLysTyrHisTrpLeuIleLeuHisGlyAspAspIleArgGl : 152 ||:!!:!!:!!.!!||||||||| !!::||| !|||:!!|||! !! .!!..!.. ysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluAr 299907 : GCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACG : 299963 153 : uCysMetGluHisIleLysTrpAsp : 160 !|||!!::!!|||:!!:!! ! ||| gCysIleGlnHisValGluArgAsp 299964 : ATGCATCCAACACGTCGAGAGAGAC : 299989 vulgar: gi|805766339|ref|XP_003700911.2| 56 160 . KQ414889.1 299674 299989 + 183 M 22 66 G 0 3 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299675 299989 183 + . gene_id 26 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299675 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299675 299989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299675 299989 183 + . alignment_id 26 ; Query gi|805766339|ref|XP_003700911.2| ; Align 299675 57 66 ; Align 299744 79 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 342 -> 391 Target range: 219328 -> 219475 343 : GluTrpAsnSerLysAsnIleThrIleThrValGlyTyrValIleLeuTyrThrSerL : 362 ||||||!!.|||!!.:!!:!!|||! !.!!||| !|||:!!|||||| !! !|||| GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 363 : euAlaPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlnCysAr : 381 ||...|||||||||||||||||||||||||||||||||:!!|||||||||||| .. euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGlnValGl 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAggtaga : 219443 382 : gAsnValGlyGlnMetSerTyrMetIleAsp : 391 .... ::::::::: :::|||::: uThrPhePheLysIleAlaLysIleIleGlu 219444 : aacatttttcaaaattgcaaaaattatcgaa : 219475 vulgar: gi|805766339|ref|XP_003700911.2| 342 391 . KQ414889.1 219328 219475 + 139 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219475 139 + . gene_id 27 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219329 219475 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219475 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219475 139 + . alignment_id 27 ; Query gi|805766339|ref|XP_003700911.2| ; Align 219329 343 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 305 -> 341 Target range: 219141 -> 219249 306 : ArgIleLeuLysPheLeuAlaLeuThrGluLysThrPheLysGlnIleSerPheAlaG : 325 ||| ...:::||||||.!!|||||||||!:!|||.!!:!!|||||||||||||||| ArgTyrPheArgPheLeuThrLeuThrGluArgThrLeuGlnGlnIleSerPheAlaG 219142 : CggtatttcagatttttgaCGCTCACAGAGAGAACCCTCCAGCAAATCTCTTTCGCTG : 219199 326 : luPheLeuAlaCysValLeuAsnLeuCysLeuValGlyTyrTyrIleIle : 341 ||||||||!.!|||..!:!!:!!:!!|||||||||||||||||||||||| luPheLeuGlyCysThrMetAspIleCysLeuValGlyTyrTyrIleIle 219200 : AATTTCTAGGATGCACCATGGACATATGTCTCGTTGGATATTACATTATC : 219249 vulgar: gi|805766339|ref|XP_003700911.2| 305 341 . KQ414889.1 219141 219249 + 135 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219142 219249 135 + . gene_id 28 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219142 219249 . + . KQ414889.1 exonerate:protein2genome:local exon 219142 219249 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219142 219249 135 + . alignment_id 28 ; Query gi|805766339|ref|XP_003700911.2| ; Align 219142 306 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 378 -> 438 Target range: 238625 -> 238805 379 : GlnCysArgAsnValGlyGlnMetSerTyrMetIleAspTrpTyrArgLeuArgGlyA : 398 |||||| !!!.||||||:!!:!! !||||||! !||||||||| !|||! ! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 399 : snLysLysLeuPheCysIleLeuIleMetAlaMetSerAsnSerSerIleLysLeuTh : 417 ..!:!! ||| !! |||||||||!!: ! |||||| ! !:!!|||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 418 : rAlaGlyAsnMetValGluLeuSerIleGlyThrPheThrAspValValLysThrSer : 436 |||||||!!.:!::!!.!.:!!|||:!! !|||||| !|||||| !:!!|||!:! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 437 : ValAla : 438 :!!||| LeuAla 238798 : CTTGCT : 238805 vulgar: gi|805766339|ref|XP_003700911.2| 378 438 . KQ414889.1 238625 238805 + 132 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238805 132 + . gene_id 29 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238805 132 + . alignment_id 29 ; Query gi|805766339|ref|XP_003700911.2| ; Align 238626 379 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 342 -> 381 Target range: 228247 -> 228364 343 : GluTrpAsnSerLysAsnIleThrIleThrValGlyTyrValIleLeuTyrThrSerL : 362 ||||||||| !!|||.!.:!!|||.!!.!!||| !||| ! ||| ! !|||! GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerP 228248 : GAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCT : 228305 363 : euAlaPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlnCysAr : 381 !!...|||||||||||||||||||||||||||||||||:!!|||||||||!!. || heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluHisValAr 228306 : TTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACGTAAG : 228362 382 : g : 381 | g 228363 : A : 228364 vulgar: gi|805766339|ref|XP_003700911.2| 342 381 . KQ414889.1 228247 228364 + 127 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228248 228364 127 + . gene_id 30 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 228248 228364 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228364 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228248 228364 127 + . alignment_id 30 ; Query gi|805766339|ref|XP_003700911.2| ; Align 228248 343 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 370 -> 432 Target range: 272990 -> 273176 371 : TyrIleGlyGluLeuValAlaGluGlnCysArgAsnValGlyGlnMetSerTyrMetI : 390 |||::: ::: ::: ||||||:::...:::|||:!!:!: !||||||! TyrLeuProLysLysAsnSer***GlnCysLysLysIleGlyGluValValTyrMetT 272991 : TACttaccgaagaaaaattcttaacagtgtaaaaaaattggcGAGGTAGTTTACATGA : 273048 391 : leAspTrpTyrArgLeuArgGlyAsnLysLysLeuPheCysIleLeuIleMetAlaMe : 409 :!!|||||| !|||! !|||!!. ! ! ||| ! |||||||||!!::!!! hrAsnTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerAr 273049 : CGAACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAG : 273105 410 : tSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleGlyThr : 428 !!!!:! ! !||||||:!!|||||||||!..!!:||| :!!|||:!: !||| gCysSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThr 273106 : ATGCAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACG : 273162 429 : PheThrAspVal : 432 ||| !|||||| PheGlyAspVal 273163 : TTCGGCGATGTA : 273176 vulgar: gi|805766339|ref|XP_003700911.2| 370 432 . KQ414889.1 272990 273176 + 122 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272991 273176 122 + . gene_id 31 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272991 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 272991 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272991 273176 122 + . alignment_id 31 ; Query gi|805766339|ref|XP_003700911.2| ; Align 272991 371 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 342 -> 393 Target range: 301686 -> 301839 343 : GluTrpAsnSerLysAsnIleThrIleThrValGlyTyrValIleLeuTyrThrSerL : 362 ||||||.!.!:!!..:!!! ! ! !! !:!! !!:! !!! !|||! ||||||! GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerP 301687 : GAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGT : 301744 363 : euAlaPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlnCysAr : 381 !!.!!|||||||||||||||||||||||||||||||||:!!:!!:!!|||||| ! heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGlnValLe 301745 : TCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGGTACT : 301801 382 : gAsnValGlyGlnMetSerTyrMetIleAspTrpTyr : 393 !!.! !.!!::! :::......... !||| uThrTyrSerArgSerPheHisPhePheSerMetTyr 301802 : TACTTACAGTAGAagtttccatttcttttcaatGTAT : 301839 vulgar: gi|805766339|ref|XP_003700911.2| 342 393 . KQ414889.1 301686 301839 + 105 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301687 301839 105 + . gene_id 32 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301687 301839 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301839 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301687 301839 105 + . alignment_id 32 ; Query gi|805766339|ref|XP_003700911.2| ; Align 301687 343 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793823|ref|XP_012142572.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 431 Query range: 0 -> 194 Target range: 1702082 -> 1703647 1 : MetHisLeuAlaThrGlnPheArgIleLeuArgTyrArgMetGluIleLeuCysGl : 19 :!!||| !|||||||||||||||||||||!:!||||||:!:..!! !||| !!!! LeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAs 1702083 : CTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTATCGAACTTGGGTGA : 1702137 20 : uThrThrThrGluThrGluLysSerSerGluLysLeuIleProCysAsnGlnValT : 38 :|||!.!! !:!! !! ! ! ..!!:!|||... ! ! !! ::!!:: !!. pThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAlaLeuSerArgPheA 1702138 : TACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCTCTGTCTCGTTTCG : 1702194 39 : hrGluSer<->TyrAsnLysPheLysAsnCysValGlnGlnHisLeuAlaLeuIle : 55 !!|||!:! |||!!. !|||||||||||||||!:!||||||! ! !! !||| laGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHisGlnAsnHisIle 1702195 : CGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCATATC : 1702248 56 : AsnTyrCysGluAlaLeuGluLysValPheThrSerIleThrLeuValGlnValMe : 74 !..||||||.!. !|||.!.:!!:!!|||||| !|||..!|||! !!!.:!!:! ThrTyrCysHisArgLeuAsnGluIlePheThrValIleValLeuGlyHisIleLe 1702249 : ACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTACTCGGACACATACT : 1702305 75 : tValPheSerValLeuIleCysLeuPheGlyTyrGlnIleLeuLeu >>>> Tar : 90 :|||||||||:!!|||||||||||| !!|||!:!|||:!:|||:!! uValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeuVal++ 1702306 : TGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTCGTGgt........ : 1702355 91 : get Intron 1 >>>> AlaGlnSerSerIleGlyArgArgSerIleTyrIleS : 102 607 bp .!!! !!!! !!.!|||||| !! !!:!:!!! -+ThrProValThrProAlaArgArgLeuThrPheValP 1702356 : .................ggACACCTGTGACTCCAGCGAGGCGGCTTACTTTCGTAT : 1702996 103 : erLeuLeuValGlySerMetGlyIleLeuPheMetTyrThrTyrSerCysAsnGly : 120 !! !:!!|||||||||:!: !! !|||!!.:!:!:!||||||||||||:!!||| heHisIleValGlySerLeuCysGlnLeuLeuLeuPheThrTyrSerCysAspGly 1702997 : TTCACATAGTCGGTAGTCTATGCCAACTATTGCTATTTACCTATAGCTGCGACGGT : 1703050 121 : LeuMetValGluSerAspLysIleGlyGluAlaIleTyrSerThrMetTrpThrGl : 139 |||!!:! !|||||| !!.|||||| ||||||||| ! ! |||! !!! LeuIleGluGluSerThrAsnIleGlyThrAlaIleTyrLeuGlyProTrpIleHi 1703051 : CTGATAGAGGAAAGTACGAACATCGGGACTGCGATATACCTCGGGCCTTGGATACA : 1703107 140 : nMetProMetAsnGluHisGlyArgLysLeuArgLysAspLeuIleMetValMetL : 158 .:!!||||||:!!:!! !||||||!:!||||||!:!||||||! !||||||!!:: sLeuProMetAspLysAlaGlyArgArgLeuArgArgAspLeuThrMetValIleV 1703108 : TCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGAAGAGACTTGACAATGGTCATCG : 1703164 159 : euArgSerArgArgIleCysCysMetThrAlaTyrGlyPhePheProValSerVal : 176 !!|||||||||!:! !!|||:!:|||||| !||||||||||||||||||:!! alArgSerArgLysSerSerCysLeuThrAlaSerGlyPhePheProValSerLeu 1703165 : TAAGATCGAGAAAATCGAGCTGTTTAACTGCCAGCGGATTCTTTCCTGTTTCGCTG : 1703218 177 : GluThrTyrSerThr >>>> Target Intron 2 >>>> IleLeuSerThr : 185 ||||||! !!!!||| 373 bp :!:||||||||| GluThrCysThrThr++ ++ValLeuSerThr 1703219 : GAAACTTGTACCACGgt.........................agGTGCTCAGTACA : 1703618 186 : AlaAlaSerTyrPheThrLeuLeuArg : 194 ||| !||||||||||||||||||||| AlaMetSerTyrPheThrLeuLeuArg 1703619 : GCGATGTCATACTTCACTTTATTAAGG : 1703647 vulgar: gi|805793823|ref|XP_012142572.1| 0 194 . KQ414915.1 1702082 1703647 + 431 M 40 120 G 0 3 M 49 147 5 0 2 I 0 603 3 0 2 M 92 276 5 0 2 I 0 369 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702083 1703647 431 + . gene_id 1 ; sequence gi|805793823|ref|XP_012142572.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702083 1702352 . + . KQ414915.1 exonerate:protein2genome:local exon 1702083 1702352 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1702353 1702354 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1702353 1702959 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702958 1702959 . + . intron_id 0 ; splice_site "GG" KQ414915.1 exonerate:protein2genome:local cds 1702960 1703235 . + . KQ414915.1 exonerate:protein2genome:local exon 1702960 1703235 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1703236 1703237 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1703236 1703608 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1703607 1703608 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1703609 1703647 . + . KQ414915.1 exonerate:protein2genome:local exon 1703609 1703647 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702083 1703647 431 + . alignment_id 1 ; Query gi|805793823|ref|XP_012142572.1| ; Align 1702083 1 120 ; Align 1702206 41 147 ; Align 1702960 90 276 ; Align 1703609 182 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793823|ref|XP_012142572.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 431 Query range: 0 -> 198 Target range: 1711951 -> 1713330 1 : MetHisLeuAlaThrGlnPheArgIleLeuArgTyrArgMetGluIleLeu<-><- : 18 :!:|||||||||||||||||||||||||||!:!:!!|||:!!! !! !:!! LeuHisLeuAlaThrGlnPheArgIleLeuGlnHisArgLeuValAsnIleAsnGl 1711952 : CTACACTTGGCCACTCAGTTTCGAATACTGCAACATAGACTGGTGAATATAAACGG : 1712006 19 : >CysGluThrThrThrGluThrGluLysSerSerGluLysLeuIleProCysAsnG : 36 :!!!:!! ! ! ! !!||||||.!!..! !..!:!!||| !! !..: yLeuLysSerLysGlnThrProGluLysGlyGluThrSerIleIleAspSerThrG 1712007 : TCTGAAGAGCAAACAGACACCGGAGAAAGGTGAAACGTCGATTATAGATTCGACAG : 1712063 37 : lnValThrGlu<->SerTyrAsnLysPheLysAsnCysValGlnGlnHisLeuAla : 53 !! !!.!!!!: ||||||:!! ||||||!..||||||!::||||||! !:!! luPheAlaAspAsnSerTyrAspValPheLysArgCysValArgGlnHisGlnSer 1712064 : AATTTGCGGATAACTCTTACGACGTTTTCAAAAGATGCGTTCGTCAACATCAATCT : 1712117 54 : LeuIleAsnTyrCysGluAlaLeuGluLysValPheThrSerIleThrLeuValGl : 72 |||!!: !!:!|||||| ||||||::::::|||!:!! !|||! !|||! !|| LeuMetAlaPheCysGluLysLeuGluGluMetPheSerMetIleIleLeuGlyGl 1712118 : CTGATGGCTTTCTgcgagaaactcgaagaaatgTTCAGTATGATTATACTGGGGCA : 1712174 73 : nValMetValPheSerValLeuIleCysLeuPheGlyTyrGlnIleLeuLeu >> : 90 |:!!:!:|||||||||:!!!!!!!:|||||| !! !! !|||:!!|||||| nLeuLeuValPheSerIlePheMetCysLeuAspValCysGlnValLeuLeu++ 1712175 : ATTGTTAGTGTTCAGTATTTTTATGTGTCTCGACGTGTGCCAAGTACTTCTGgt.. : 1712230 91 : >> Target Intron 1 >>>> AlaGlnSerSerIleGlyArgArgSerIleT : 100 142 bp !! :!!|||:!:|||!:!!:!! |||: ++ProGlyAlaSerValGlyLysGlnMetIleP 1712231 : .......................agCCAGGTGCATCTGTGGGTAAACAGAtgattt : 1712400 101 : yrIleSerLeuLeuValGlySerMetGlyIleLeuPheMetTyrThrTyrSerCys : 118 :: |||!.!|||!!!||| !! !|||.!.|||!:!|||||||||||| heThrPheHisLeuAlaGlyCysMetCysGlnLeuLeuMetPheThrTyrSerCys 1712401 : tcacgtttcacctAGCGGGATGTATGTGTCAATTGCTGATGTTTACGTACAGCTGC : 1712454 119 : AsnGlyLeuMetValGluSerAspLysIleGlyGluAlaIleTyrSerThrMetTr : 137 :!! !!:!!!!:..!|||||| !!.:!: !||||||:!:|||..! ! || AspCysIleIleThrGluSerLeuAsnValThrGluAlaValTyrAspGlyProTr 1712455 : GATTGTATAATAACGGAAAGTTTGAACGTGACGGAAGCGGTGTACGATGGACCATG : 1712511 138 : pThrGlnMetProMetAsnGluHisGlyArgLysLeuArgLysAspLeuIleMetV : 156 | !!!:::!!||||||!:! !...||||||! !:!!|||||||||||||||:!:| pProArgLeuProMetSerThrArgGlyArgMetIleArgLysAspLeuIleLeuV 1712512 : GCCACGTTTGCCAATGAGCACGAGAGGAAGAATGATAAGGAAGGATTTGATACTCG : 1712568 157 : alMetLeuArgSerArgArgIleCysCysMetThrAlaTyrGlyPhePheProVal : 174 ||!!::!!||||||||| ! !||||||:!!|||||| ||||||||| !:!! alIleIleArgSerArgValProCysCysLeuThrAlaArgGlyPhePheValIle 1712569 : TTATCATAAGATCGAGAGTACCTTGTTGCTTGACCGCCAGAGGATTCTTCGTAATA : 1712622 175 : SerValGluThrTyrSerThr >>>> Target Intron 2 >>>> IleLeu : 183 |||:!!|||||||||!!!! ! 634 bp :!!:!! SerLeuGluThrTyrThrLys++ ++ValIle 1712623 : TCTTTGGAAACGTATACGAAGgt.........................agGTTATA : 1713283 184 : SerThrAlaAlaSerTyrPheThrLeuLeuArgSerArgIleGlu : 198 |||||||||!.!|||||||||||||||||||||..!||||||||| SerThrAlaValSerTyrPheThrLeuLeuArgGlnArgIleGlu 1713284 : AGTACAGCAGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAG : 1713330 vulgar: gi|805793823|ref|XP_012142572.1| 0 198 . KQ414915.1 1711951 1713330 + 431 M 17 51 G 0 6 M 22 66 G 0 3 M 50 150 5 0 2 I 0 138 3 0 2 M 92 276 5 0 2 I 0 630 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711952 1713330 431 + . gene_id 2 ; sequence gi|805793823|ref|XP_012142572.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1711952 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1711952 1712227 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712228 1712229 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712228 1712369 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1712368 1712369 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1712370 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712370 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713330 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713330 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711952 1713330 431 + . alignment_id 2 ; Query gi|805793823|ref|XP_012142572.1| ; Align 1711952 1 51 ; Align 1712009 18 66 ; Align 1712078 40 150 ; Align 1712370 90 276 ; Align 1713280 182 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793823|ref|XP_012142572.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 422 Query range: 0 -> 194 Target range: 1694932 -> 1696251 1 : MetHisLeuAlaThrGlnPheArgIleLeuArgTyrArg<->MetGluIleLeuCy : 18 :!:|||:!!|||||||||||||||||||||!:!|||||| |||.!.:!: ! LeuHisValAlaThrGlnPheArgIleLeuGlnTyrArgPheMetAsnLeuSerAs 1694933 : CTTCACGTGGCCACTCAATTTCGTATCCTTCAATACCGATTCATGAATTTGAGTAA : 1694987 19 : sGluThrThrThrGluThrGluLysSerSerGluLysLeuIleProCysAsnGlnV : 37 !! !! ! !! !:!!|||!!: ... :::::: ! ||| . nValIleGluLysGlnThrAspGlyArgGluLeuGluIleGlyTyrThrAsnPheT 1694988 : TGTAATTGAGAAGCAAACAGACGGTcgagaattggaaattggtTACACAAATTTCA : 1695044 38 : alThrGluSerTyrAsnLysPheLysAsnCysValGlnGlnHisLeuAlaLeuIle : 55 .!..!!!:|||||| :!!!!.|||!:!||||||||| ! |||! !||||||! ! hrValAspSerTyrLeuGlnLeuLysSerCysValGlnTyrHisGlnAlaLeuThr 1695045 : CAGTCGATAGTTACTTACAATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACA : 1695098 56 : AsnTyrCysGluAlaLeuGluLysValPheThrSerIleThrLeuValGlnValMe : 74 ..!||||||:!! !||||||!!.:!!|||:!!! !:!!..!|||! !||||||:! GlyTyrCysLysLysLeuGluAsnIlePheSerLeuLeuValLeuGlyGlnValLe 1695099 : GGCTATTGCAAAAAGTTGGAGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGCT : 1695155 75 : tValPheSerValLeuIleCysLeuPheGlyTyrGlnIleLeuLeu >>>> Tar : 90 : !!.!.:!!:!!:!!:!!|||||| ! |||||||||:!!!!!||| uPheLeuAlaMetValLeuCysLeuValGlyTyrGlnLeuPheLeu++ 1695156 : TTTCCTAGCCATGGTACTTTGCCTCGTGGGATATCAGCTATTTCTGgt........ : 1695205 91 : get Intron 1 >>>> AlaGlnSerSerIleGlyArgArgSerIleTyrIleS : 102 415 bp .!!.!.||| !! !..!|||!.! ! !! :!! ++ThrAspSerProProSerArgAsnValGlyLeuValL 1695206 : .................agACAGACTCACCACCTTCGAGAAACGTCGGATTGGTAC : 1695654 103 : erLeuLeuValGlySerMetGlyIleLeuPheMetTyrThrTyrSerCysAsnGly : 120 ! !|||!.!|||!!!:!! !! !|||||||||!:!||||||||||||:!!||| euAsnLeuAlaGlyThrLeuCysGlnLeuPheMetPheThrTyrSerCysAspGly 1695655 : TCAACCTGGCAGGCACTTTGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGT : 1695708 121 : LeuMetValGluSerAspLysIleGlyGluAlaIleTyrSerThrMetTrpThrGl : 139 |||! !|||||| ! :!!.!!..!|||:!!!:!:!!! ! !|||.!!.! LeuThrArgGluSerMetAspValSerArgAlaValPheAlaArgProTrpAlaAs 1695709 : TTGACAAGAGAGAGCATGGACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAA : 1695765 140 : nMetProMetAsnGluHisGlyArgLysLeuArgLysAspLeuIleMetValMetL : 158 .:!!||||||:!!..!:!!|||!:!!..:!!|||:!!..!:!!:!!||||||!!:: nLeuProMetAspArgAsnGlyLysSerValArgGlnSerMetLeuMetValIleM 1695766 : TCTGCCAATGGATAGAAATGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCA : 1695822 159 : euArgSerArgArgIleCysCysMetThrAlaTyrGlyPhePheProValSerVal : 176 !!||||||!.!||| !||||||:!:|||||| !||||||||||||||||||:!! etArgSerAsnArgCysCysCysLeuThrAlaSerGlyPhePheProValSerLeu 1695823 : TGAGGTCGAACAGGTGTTGCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTC : 1695876 177 : GluThrTyrSerThr >>>> Target Intron 2 >>>> IleLeuSerThr : 185 |||||||||!!! ! 319 bp :!!||||||||| GluThrTyrThrGly++ ++ValLeuSerThr 1695877 : GAGACTTACACTGGGgt.........................agGTCCTCAGCACT : 1696222 186 : AlaAlaSerTyrPheThrLeuLeuArg : 194 ||| !||||||||||||||||||||| AlaMetSerTyrPheThrLeuLeuArg 1696223 : GCAATGTCATACTTTACACTACTGAGA : 1696251 vulgar: gi|805793823|ref|XP_012142572.1| 0 194 . KQ414915.1 1694932 1696251 + 422 M 13 39 G 0 3 M 76 228 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694933 1696251 422 + . gene_id 3 ; sequence gi|805793823|ref|XP_012142572.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694933 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694933 1695202 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 1 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696251 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696251 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694933 1696251 422 + . alignment_id 3 ; Query gi|805793823|ref|XP_012142572.1| ; Align 1694933 1 39 ; Align 1694975 14 228 ; Align 1695618 90 276 ; Align 1696213 182 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793823|ref|XP_012142572.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 401 Query range: 0 -> 196 Target range: 1707445 -> 1709240 1 : MetHisLeuAlaThrGlnPheArgIleLeuArgTyrArgMetGluIleLeuCysGl : 19 :!:||| !|||||||||||||||||||||!:!||||||:!!..!! !:!!|||! LeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnValCysGl 1707446 : CTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGG : 1707500 20 : uThrThrThrGluThrGluLysSerSerGluLysLeuIleProCysAsnGlnValT : 38 .!!!.! !...!:::::||| |||:::||| |||! !|||..! yAlaAsnGluArgSerAspLysIleSerLysLys---ThrProSerAsnSer---A 1707501 : TGCAAACGAACGTAgcgataaaatttcgaaaaaa---acaCCGTCCAATTCG---G : 1707551 39 : hrGluSerTyrAsnLysPheLysAsnCysValGlnGlnHisLeuAlaLeuIleAsn : 56 !|||!!!||| !|||||||||||||||:!!|||||||||! !|||||||||.!. spGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGlu 1707552 : ACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAA : 1707605 57 : TyrCysGluAlaLeuGluLysValPheThrSerIleThrLeuValGlnValMetVa : 75 ||||||.!.! !|||:!!:!!|||||| !! !.!!..!|||!.!||||||:!!:! TyrCysAsnGluLeuGlnGluValPheGlyLeuPheValLeuAlaGlnValLeuLe 1707606 : TACTGTAACGAACTTCAAGAGGTGTTCGGTTTATTTGTGCTTGCACAAGTGTTGCT : 1707662 76 : lPheSerValLeuIleCysLeuPheGlyTyrGlnIleLeu >>>> Target In : 89 !||||||:!!|||!!:|||||| !|||||| !:!::!! 457 uPheSerLeuLeuMetCysLeuAspGlyTyrLeuValMet++ 1707663 : CTTCAGTTTGTTAATGTGCCTCGATGGATATTTGGTGATGgt.............. : 1707706 90 : tron 1 >>>> LeuAlaGlnSerSerIleGlyArgArgSerIleTyrIleSerL : 103 bp ! !.!.!!! !!||| !!:!||| !! !!:!:!:! !! ++---GluAspThrProIleMetGlnArgLeuThrPheLeuPheH 1707707 : ...........ag---GAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTC : 1708200 104 : euLeuValGlySerMetGlyIleLeuPheMetTyrThrTyrSerCysAsnGlyLeu : 121 !|||..!|||!!!:!! !! !|||!!.|||!:!||||||||||||:!! !!||| isLeuThrGlyCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeu 1708201 : ACCTAACGGGATGCCTGTGCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTG : 1708254 122 : MetValGluSerAspLysIleGlyGluAlaIleTyrSerThrMetTrpThrGlnMe : 140 !!: !|||||| !!.:!:!.!.!.|||||||||..! ! !|||! !!!.:! IleArgGluSerLeuAsnValAlaAsnAlaIleTyrAspCysSerTrpIleHisLe 1708255 : ATACGAGAAAGCTTGAACGTGGCCAATGCTATATACGACTGCTCGTGGATTCACTT : 1708311 141 : tProMetAsnGluHisGlyArgLysLeuArgLysAspLeuIleMetValMetLeuA : 159 !||||||:!!..! !||||||! !|||||||||||||||! !.!.|||!!: !| uProMetAspArgSerGlyArgMetLeuArgLysAspLeuThrPheValIleGlyA 1708312 : GCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGACATTCGTCATTGGAA : 1708368 160 : rgSerArgArgIleCysCysMetThrAlaTyrGlyPhePheProValSerValGlu : 177 |||||||| ! !||||||:!:||||||! !||||||||||||||||||:!!||| rgSerArgValProCysCysLeuThrAlaCysGlyPhePheProValSerLeuGlu 1708369 : GATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAA : 1708422 178 : ThrTyr<->Ser >>>> Target Intron 2 >>>> ThrIleLeuSerThr : 185 |||||| ||| 759 bp |||||||||||| ThrTyrThrSer++ ++---IleLeuSerThr 1708423 : ACGTACACTTCGgt.........................ag---ATTTTAAGTACC : 1709205 186 : AlaAlaSerTyrPheThrLeuLeuArgSerArg : 196 |||||||||||||||||||||||||||!.!!:! AlaAlaSerTyrPheThrLeuLeuArgLysGln 1709206 : GCAGCGTCATACTTCACACTGCTACGAAAACAA : 1709240 vulgar: gi|805793823|ref|XP_012142572.1| 0 196 . KQ414915.1 1707445 1709240 + 401 M 30 90 G 1 0 M 5 15 G 1 0 M 51 153 5 0 2 I 0 453 3 0 2 G 1 0 M 90 270 G 0 3 M 1 3 5 0 2 I 0 755 3 0 2 G 1 0 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707446 1709240 401 + . gene_id 4 ; sequence gi|805793823|ref|XP_012142572.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1707446 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707446 1707703 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709240 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709240 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1707446 1709240 401 + . alignment_id 4 ; Query gi|805793823|ref|XP_012142572.1| ; Align 1707446 1 90 ; Align 1707536 32 15 ; Align 1707551 38 153 ; Align 1708161 90 270 ; Align 1708434 180 3 ; Align 1709196 182 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793823|ref|XP_012142572.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 223 Query range: 96 -> 196 Target range: 1689489 -> 1690082 97 : ArgSerIleTyrIleSerLeuLeuValGlySerMetGlyIleLeuPheMetTyrTh : 115 ||| !|||!:!:!!! !! !:!!:!!||||||.!. ! :::......:::|| ArgLeuIlePheLeuPheHisMetIleGlySerPheIleHisIleIlePhePheTh 1689490 : CGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCacataattttcttcac : 1689544 116 : rTyrSerCysAsnGlyLeuMetValGluSerAspLysIleGlyGluAlaIleTyrS : 134 ||||||||||..!||||||!!:! !|||||| ! |||!.! !|||! |||: rTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleAlaThrAlaThrTyrA 1689545 : gtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCAACAGCAACGTATG : 1689601 135 : erThrMetTrpThrGlnMetProMetAsnGluHisGlyArgLysLeuArgLysAsp : 152 !! !||||||||| :!!|||||||||:!! !|||!:!! !:!!||| !:!! laGlyMetTrpThrValLeuProMetAsnLysValGlyLysMetIleArgGlyAsn 1689602 : CAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAATGATACGAGGAAAT : 1689655 153 : LeuIleMetValMetLeuArgSerArgArgIleCysCysMetThrAlaTyrGlyPh : 171 :!!! :!::!!! :!!|||||| !!:! ||||||!!:|||||| !||||| MetLysLeuMetThrValArgSerLeuGlnProCysCysIleThrAlaGlyGlyPh 1689656 : ATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAACTGCTGGTGGATT : 1689712 172 : ePheProValSerValGluThrTyrSerThr >>>> Target Intron 1 >> : 182 |||||||||||||:!!:!!||| !!!!.!! 293 bp ePheProValSerLeuLysThrAlaThrAla++ 1689713 : CTTTCCTGTCTCCTTGAAAACTGCTACCGCGgt....................... : 1689747 183 : >> IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgSerArg : 196 :!!:!!|||:!!.!! !|||||||||||||||:!!|||..!||| ++LeuMetSerSerThrMetSerTyrPheThrLeuMetArgGluArg 1689748 : ..agCTAATGAGTTCCACAATGTCGTATTTCACGCTCATGAGAGAGAGA : 1690082 vulgar: gi|805793823|ref|XP_012142572.1| 96 196 . KQ414915.1 1689489 1690082 + 223 M 85 255 5 0 2 I 0 289 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1689490 1690082 223 + . gene_id 5 ; sequence gi|805793823|ref|XP_012142572.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1689490 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689490 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690082 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690082 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1689490 1690082 223 + . alignment_id 5 ; Query gi|805793823|ref|XP_012142572.1| ; Align 1689490 97 255 ; Align 1690038 182 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793823|ref|XP_012142572.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 195 Query range: 95 -> 195 Target range: 1682556 -> 1683054 96 : ArgArgSerIleTyrIleSerLeuLeuValGlySerMetGlyIleLeuPheMetTy : 114 !:!|||! !:!:!:!:!!!:!! !!!!:!!|||.!!:!! :::|||::: LysArgLeuLeuPheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePheLeuIl 1682557 : AAACGATTGTTGTTCCTAAATTACTTTCTCGGTGGAGTGATacagatatttttaat : 1682611 115 : rThrTyrSerCysAsnGlyLeuMetValGluSerAspLysIleGlyGluAlaIleT : 133 ||| !:!||||||! !:!!|||! !:!!|||! ! |||||| !||||||| eThrLeuAsnCysAsnAspIleMetGluGlnSerGlyAlaIleGlyThrAlaIleT 1682612 : aacccTAAATTGCAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAGCGATCT : 1682668 134 : yrSerThrMetTrpThrGlnMetProMetAsnGluHisGlyArgLysLeuArgLys : 151 ||||| !! ||| !::!! ||| ||| :!!!!!|||||| yrSerCysAsnTrpGluArgAsnValTyrAsn---HisPheTyrGlnPheArgLys 1682669 : ACAGTTGTAATTGGGAGAGGAAtgtttataat---catttttaccAGTTCAGAAAG : 1682719 152 : AspLeuIleMetValMetLeuArgSerArgArgIleCysCysMetThrAlaTyrGl : 170 |||:!!!!:!!:||||||:!!|||:!!!:!||| !|||! !!!::!!||| AspMetMetIleValMetValArgAlaLysArgProCysTyrIleSerAlaAlaLy 1682720 : GATATGATGATTGTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGCAGCGAA : 1682776 171 : yPhePheProValSerValGluThrTyrSerThr >>>> Target Intron 1 : 182 !|||||||||:!!|||:!!|||:!!!:!!!!! 201 bp sPhePheProIleSerLeuGluSerPheThrLys++ 1682777 : ATTCTTTCCAATCTCCCTTGAATCGTTCACGAaggt.................... : 1682814 183 : >>>> IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgSer : 195 :!:||||||.!!.!!|||||||||!:!||||||||||||!!! ++ValLeuSerAlaThrAlaSerTyrTyrThrLeuLeuArgThr 1682815 : .....agGTGTTAAGTGCAACAGCATCTTATTATACACTGCTGCGTACA : 1683054 vulgar: gi|805793823|ref|XP_012142572.1| 95 195 . KQ414915.1 1682556 1683054 + 195 M 48 144 G 1 0 M 37 111 5 0 2 I 0 197 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682557 1683054 195 + . gene_id 6 ; sequence gi|805793823|ref|XP_012142572.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1682557 1682811 . + . KQ414915.1 exonerate:protein2genome:local exon 1682557 1682811 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1682812 1682813 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1682812 1683012 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1683011 1683012 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1683013 1683054 . + . KQ414915.1 exonerate:protein2genome:local exon 1683013 1683054 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1682557 1683054 195 + . alignment_id 6 ; Query gi|805793823|ref|XP_012142572.1| ; Align 1682557 96 144 ; Align 1682701 145 111 ; Align 1683013 182 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793823|ref|XP_012142572.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 194 Query range: 0 -> 89 Target range: 1699701 -> 1699971 1 : MetHisLeuAlaThrGlnPheArgIleLeuArgTyrArgMetGluIleLeuCysGl : 19 :!!||| !|||||||||||||||||||||!:!||||||:!:..!! !||| !!!! LeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAs 1699702 : CTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTATCGAACTTGGGTGA : 1699756 20 : uThrThrThrGluThrGluLysSerSerGluLysLeuIleProCysAsnGlnValT : 38 :|||!.!! !:!! !! ! ! ..!!:!|||... ! ! !! ::!!:: !!. pThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAlaLeuSerArgPheA 1699757 : TACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCTCTGTCTCGTTTCG : 1699813 39 : hrGluSer<->TyrAsnLysPheLysAsnCysValGlnGlnHisLeuAlaLeuIle : 55 !!|||!:! |||!!. !|||||||||||||||!:!||||||! ! !! !||| laGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHisGlnAsnHisIle 1699814 : CGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCATATC : 1699867 56 : AsnTyrCysGluAlaLeuGluLysValPheThrSerIleThrLeuValGlnValMe : 74 !..||||||.!. !|||.!.:!!:!!|||||| !|||..!|||! !!!.:!!:! ThrTyrCysHisArgLeuAsnGluIlePheThrValIleValLeuGlyHisIleLe 1699868 : ACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTACTCGGACACATACT : 1699924 75 : tValPheSerValLeuIleCysLeuPheGlyTyrGlnIleLeuLeu : 89 :|||||||||:!!|||||||||||| !!|||!:!|||:!:|||:!! uValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeuVal 1699925 : TGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTCGTA : 1699971 vulgar: gi|805793823|ref|XP_012142572.1| 0 89 . KQ414915.1 1699701 1699971 + 194 M 40 120 G 0 3 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699702 1699971 194 + . gene_id 7 ; sequence gi|805793823|ref|XP_012142572.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1699702 1699971 . + . KQ414915.1 exonerate:protein2genome:local exon 1699702 1699971 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699702 1699971 194 + . alignment_id 7 ; Query gi|805793823|ref|XP_012142572.1| ; Align 1699702 1 120 ; Align 1699825 41 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805782670|ref|XP_012139624.1| PREDICTED: odorant receptor 13a-like isoform X1 [Megachile rotundata] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 263 -> 324 Target range: 117785 -> 117968 264 : GlnSerCysAspIleSerThrAlaValPheSerIleLysTrpTyrLysLeuProSerL : 283 |||||| ! |||.!! !|||!.!!:!!!!:!: |||:!! !! !||| !!! GlnSerGluAlaIleGlyArgAlaAlaTyrThrValProTrpHisTrpTyrProArgC 117786 : CAGAGCGAAGCGATCGGTCGTGCAGCCTATACGGTGCCTTGGCATTGGTACCCTCGTT : 117843 284 : euIleLysAspGluValTyrMetIleIleLeuArgSerGlnLysProCysSerIleTh : 302 !:!:::! ! !..! !!|||:!:!!::!!|||.!!||||||||| ! !!:!:|| ysLeuArgLysProThrAsnMetLeuMetIleArgGlyGlnLysProValArgLeuTh 117844 : GCTTGCGAAAACCAACCAACATGCTGATGATCAGAGGTCAGAAACCGGTTCGTCTGAC : 117900 303 : rAlaGlyLysLeuTyrValMetHisLeuGluAsnPheAlaAlaValSerCysIleIle : 321 ||||||||||:!! !! !:!: !||||||!..||||||:!!|||||| !:!!||| rAlaGlyLysIleValGlyLeuSerLeuGluThrPheAlaSerValSerValValIle 117901 : CGCCGGAAAAATCGTCGGACTCTCTCTGGAAACGTTTGCCTCTGTATCCGTCGTTATC : 117957 322 : TyrLeuVal : 324 ! !:!!:!! SerIleLeu 117958 : TCTATTCTC : 117968 vulgar: gi|805782670|ref|XP_012139624.1| 263 324 . KQ414940.1 117785 117968 + 116 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 117786 117968 116 + . gene_id 1 ; sequence gi|805782670|ref|XP_012139624.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 117786 117968 . + . KQ414940.1 exonerate:protein2genome:local exon 117786 117968 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 117786 117968 116 + . alignment_id 1 ; Query gi|805782670|ref|XP_012139624.1| ; Align 117786 264 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805782670|ref|XP_012139624.1| PREDICTED: odorant receptor 13a-like isoform X1 [Megachile rotundata] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 224 -> 317 Target range: 807266 -> 807545 225 : PheGlnValSerThrAlaLeuSerGluIleSerLysLeuPheLysSerPheAlaHisL : 244 |||! !|||:!! !::! !!.!!!:! ! ! ! !!!.!:!||||||!.!! : PheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuM 807267 : TTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGA : 807324 245 : euLeuValAlaLeuPheGlnLeuLeuLeuPheCysPheProGlyAspIleLeuIleAr : 263 !!:!!..! !|||.!!||||||! !|||!:!..!!:! !!|||:!!! !||| etValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSe 807325 : TGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTC : 807381 264 : gGlnSerCysAspIleSerThrAlaValPheSerIleLysTrpTyrLysLeuProSer : 282 !!:!!!! !!:|||:!! !|||!.!!:!..! ! ||||||:::! !! !.!! rArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGly 807382 : GCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGG : 807438 283 : LeuIleLysAspGluValTyrMetIleIleLeuArgSerGlnLysProCysSerIleT : 302 ! ! ! !!::!! !:!!||||||! !|||.!!.!...!|||! ! !!|||| HisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleT 807439 : CACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAA : 807498 303 : hrAlaGlyLysLeuTyrValMetHisLeuGluAsnPheAlaAlaVal : 317 |||||||||||!!! ! !|||:!!||| !.!||| !! !:!! hrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIle 807499 : CAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATA : 807545 vulgar: gi|805782670|ref|XP_012139624.1| 224 317 . KQ414940.1 807266 807545 + 111 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807267 807545 111 + . gene_id 2 ; sequence gi|805782670|ref|XP_012139624.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807267 807545 . + . KQ414940.1 exonerate:protein2genome:local exon 807267 807545 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807267 807545 111 + . alignment_id 2 ; Query gi|805782670|ref|XP_012139624.1| ; Align 807267 225 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 224 -> 332 Target range: 807257 -> 807581 225 : GlyTyrArgIleIleThrGluProGlnLysSerAspProMetPheIleThrIleCysI : 244 |||!:! !.!!:!:..!! ! !...! !!.!||| !:!: ! !! !!. GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 245 : leIleLeuGlnThrSerPheIlePheCysSerPheIleLeuCysTyrIleGlyGlnLe : 263 !!:!!|||..!..!!!!!!.:!:.!! !!:!:!!! !..!||| |||.!. heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 264 : uLeuValAspGluAsnAsnValValGlyMetThrSerValMetLeuAspTrpTyrArg : 282 !|||! !.....!!.!.!.! !:!!!.!....!!:!! ! ! ! !||||||||| rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 283 : LeuProIleLysLysAlaArgCysLeuValLeuIleIleAlaMetSerAsnTyrProM : 302 ! !! ! ! !|||||| !|||:!!||||||||| ! .!!|||! ||| CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 303 : etGlnLeuThrAlaGlyLysIleValGluIleSerLeuValThrPheThrAspIleMe : 321 !:::!!||||||||||||.!!||| !!!:!:!||| !!||||||! !!!:|||:! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 322 : tLysMetSerMetAlaTyrLeuAsnIleLeuArg : 332 !||| ||| :!!||||||::!:!!:!!!:! uLysAlaSerGlySerTyrLeuSerValMetLys 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: gi|805765819|ref|XP_003700910.2| 224 332 . KQ414940.1 807257 807581 + 132 M 108 324 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807581 132 + . gene_id 1 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807581 132 + . alignment_id 1 ; Query gi|805765819|ref|XP_003700910.2| ; Align 807258 225 324 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 292 -> 385 Target range: 807257 -> 807536 293 : GlyTyrTyrIleLeuMetGluTrpAlaGlnGlnAspPheArgThrMetThrGlyTyrI : 312 |||!:! !.!!|||:!:! !::! !:!!||| ! !.!! ! !! !. GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 313 : leSerValPheSerSerMetThrPheAsnIlePheMetLeuCysPheIleGlyGluTh : 331 !! !:!!.!. !!!!:!! !.!!.!.:!:!:!:!:! !..!!:! |||.!.|| heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 332 : rIleLysGluGlnCysAsnLysValGlyGluAlaValTyrMetSerAsnTrpTyrTyr : 350 |:!!:!!..!!:! !.!.:!!:!!!.!:!!|||!.!||| ||| !|||||| ! rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 351 : LeuArgGluLysAspValLeuAspLeuMetLeuIleIleSerArgSerCysValGluT : 370 ! !!.!! ! ! ! !.! !||||||:!:||||||||| !|||.!! ! ! CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 371 : hrAsnIleThrAlaGlyLysIleValHisMetSerPheTyrThrPhe : 385 !..!|||||||||||||||.!!|||! |||!:!.!!!:!|||||| yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPhe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTC : 807536 vulgar: gi|805766381|ref|XP_012135246.1| 292 385 . KQ414940.1 807257 807536 + 115 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807536 115 + . gene_id 1 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807536 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807536 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807536 115 + . alignment_id 1 ; Query gi|805766381|ref|XP_012135246.1| ; Align 807258 293 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 255 -> 362 Target range: 807260 -> 807581 256 : TyrHisIleLeuMetGluTrpAlaAsnHisAspTyrGlnSerValThrSerPhePheL : 275 !:! !.!!|||:!:! !::!!.. ! ||| !! :!!!.! !!!! !|||: PheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheV 807261 : TTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCG : 807318 276 : euValLeuCysSerMetSerPheAsnMetPheIleValCysTyrIleGlyGluLysLe : 294 !!:!!:!! !!!:!! !.!!.!.:!!!:!:!! !..!||| |||.!.! !|| alLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLe 807319 : TTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACT : 807375 295 : uSerGluGlnCysLysSerIleGlyGluThrValTyrMetThrAsnTrpTyrTyrLeu : 313 |..!..!!:! !:!!..!|||!.!:!!.!!!.!||| :!! !|||||| !! ! uGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCys 807376 : CGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGC : 807432 314 : ProAsnLysAspIleLeuAspLeuIleMetIleIleSerArgSerHisMetMetThrL : 333 ! !... ! ! ! !||||||:!!:!!|||||| !|||.!!:!! ! !: HisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrA 807433 : CACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATC : 807492 334 : ysIleThrAlaGlyLysValValProMetSerPheAspThrPheAlaSerValIleLy : 352 ::||||||||||||||| !!|||||||||!:!.!! !|||||| !..!:!!:!:|| rgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLy 807493 : GTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAA : 807549 353 : sThrGlyPheAlaTyrLeuAsnValLeuArg : 362 |.!!..! !:!!||||||::!|||:!!!:! sAlaSerGlySerTyrLeuSerValMetLys 807550 : AGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: gi|805766378|ref|XP_012135245.1| 255 362 . KQ414940.1 807260 807581 + 147 M 107 321 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807261 807581 147 + . gene_id 1 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807261 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807261 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807261 807581 147 + . alignment_id 1 ; Query gi|805766378|ref|XP_012135245.1| ; Align 807261 256 321 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 319 -> 409 Target range: 807317 -> 807587 320 : IleIleLeuValSerValThrPheAsnValPheIleMetCysTyrValGlyGluLeuL : 339 :!!:!::!!|||!!!:!! !.!!.!.:!!!:!:!! ..!|||!.!|||.!. !| ValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrL 807318 : GTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACAC : 807375 340 : euThrLysGlnCysAsnArgIleAlaAspValIleTyrSerThrAsnTrpTyrTyrLe : 358 || !..!!:! !.!...!||||||.!.!.! !|||..!:!! !|||||| !! euGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCy 807376 : TCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTG : 807432 359 : uProCysLysAsnValLeuAspLeuThrValIleIleThrArgSerSerMetValThr : 377 !! ! ! ! !.! !|||||| !:!!|||||| !|||.!!!:! ! ! ! sHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyr 807433 : CCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTAT : 807489 378 : LysIleThrAlaGlyLysIleIleTyrMetSerMetTyrThrPheGlyAlaValLeuL : 397 :::|||||||||||||||.!!:!! |||!:!:!:!:!|||||| !! !:!!|||| ArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuL 807490 : CGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGA : 807549 398 : ysThrSerPheThrTyrLeuAsnIleLeuArgGlnMet : 409 ||.!!||| !:!!||||||::!:!!:!!!:! !||| ysAlaSerGlySerTyrLeuSerValMetLysValMet 807550 : AAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: gi|805766386|ref|XP_003700842.2| 319 409 . KQ414940.1 807317 807587 + 147 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807318 807587 147 + . gene_id 1 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807318 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807318 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807318 807587 147 + . alignment_id 1 ; Query gi|805766386|ref|XP_003700842.2| ; Align 807318 320 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 381 Query range: 10 -> 169 Target range: 474 -> 3 11 : IleSerGlnLysGluLeuAspGlyLeuSerAspTyrSerLeuGlnLeuAsnArgTrpLeuLeuL : 32 :!!!!!:!!! .!.:!! !!.! !||||||||||||||||||! !||||||||| !:!!| ValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetL 474 : GTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGA : 411 33 : ysProIleGlyValTrpProLysSerPheTyrThrSerAsnIleGluLysIleValSerLeuIl : 53 || !||||||..!||||||:!! !:!:!!||||||:!!|||!:!! !:!!|||! !|| ysSerIleGlyThrTrpProGln------PheSerSerAsnLeuGluArgAsnIleSerArgIl 410 : AAAGCATAGGCACATGGCCACAG------TTCTCGTCGAACCTCGAGAGAAACATCTCTCGAAT : 354 54 : eSerAsnMetIleCysTyrCysSerIleValIleThrValValProCysIleLeuHisLeuThr : 74 |! !|||:!!||||||||| !:!!|||:!!.!!:!!:!!:!!|||||| |||||||||! ! eLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMet 353 : ATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATG : 291 75 : PheGluAspIleAspPheArgThrLysLeuLysValPheGlyProMetThrHisTrpPheAlaG : 96 .!.||| ! !||| !||||||:!!|||:!!.!!||||||:!!!:!|||||| ! ! LeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyProLeuSerHisTrpValPheC 290 : CTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCT : 225 97 : lyGlyIleAsnTyrThrThrLeuLeuValArgGlyGluGluIleArgHisCysMetLysGlnMe : 117 !! !|||!:!||||||! !||||||:!!||| !!:!! |||!.!|||! !:!:!!.!!.|| ysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPheValAsnHisMe 224 : GTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTTTGTCAATCATAT : 162 118 : tGlnAsnAspTrpArgThrValSerSerProGluValGlnGlnValMetLeuLysAspAlaLys : 138 |:!!!.!||||||||||||..!::: ||| ::::::|||||||||||| !!|||||| tGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLys 161 : GGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGCTGAAGTACGCAAAA : 99 139 : PheGlyArgAsnMetAlaThrPheCysThrValPheMetGlnGlyGlyValLeuCysTyrCysA : 160 |||.!!||| !! !|||! !||||||.!!:!!|||!!:!!.||||||:!!||| ! ||||||! PheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleLeuGlyTyrCysV 98 : TTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTATACTTGGATATTGTG : 33 161 : laAlaMetAlaLeuThrLysGluIleVal : 169 .! !! |||! !|||! ! !:!!||| alMetThrAlaSerThrThrMetValVal 32 : TTATGACAGCGTCCACCACGATGGTTGTC : 4 vulgar: gi|805766386|ref|XP_003700842.2| 10 169 . LHQN01027980.1 474 3 - 381 M 29 87 G 2 0 M 128 384 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4 474 381 - . gene_id 1 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4 474 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4 474 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 4 474 381 - . alignment_id 1 ; Query gi|805766386|ref|XP_003700842.2| ; Align 475 11 87 ; Align 388 42 384 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 190 Query range: 341 -> 399 Target range: 4381 -> 4207 342 : GlnCysAsnArgIleAlaAspValIleTyrSerThrAsnTrpTyrTyrLeuProCysLysAs : 362 |||||| !:!:!!!.!!!:|||:!!|||! !|||:!!||||||||||||||| !:!!. GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 363 : nValLeuAspLeuThrValIleIleThrArgSerSerMetValThrLysIleThrAlaGlyL : 383 .:!!|||||||||! !:!!|||||||||||||||!:!:!!|||..!:!!||||||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 384 : ysIleIleTyrMetSerMetTyrThrPheGlyAlaValLeuLysThrSer : 399 |||||...:::||||||:!:||||||||||||! !||| !:!!|||!:! ysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 4208 vulgar: gi|805766386|ref|XP_003700842.2| 341 399 . LHQN01027980.1 4381 4207 - 190 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4208 4381 190 - . gene_id 2 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4208 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4208 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4208 4381 190 - . alignment_id 2 ; Query gi|805766386|ref|XP_003700842.2| ; Align 4382 342 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 341 -> 386 Target range: 1990 -> 1855 342 : GlnCysAsnArgIleAlaAspValIleTyrSerThrAsnTrpTyrTyrLeuProCysLysAs : 362 :!! !!.!!:!:!!!.!! !:!:|||! !|||.!.|||||| ||| !! |||!. GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysTh 1990 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAAC : 1930 363 : nValLeuAspLeuThrValIleIleThrArgSerSerMetValThrLysIleThrAlaGlyL : 383 !!.!|||! !!!!..!:!!||||||:!!|||||||||||||||! !|||||||||||||||| rAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyL 1929 : TGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAA : 1867 384 : ysIleIleTyr : 386 ||.!!:!!||| ysPheValTyr 1866 : AATTCGTATAC : 1856 vulgar: gi|805766386|ref|XP_003700842.2| 341 386 . LHQN01027980.1 1990 1855 - 111 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1856 1990 111 - . gene_id 3 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1856 1990 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1856 1990 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1856 1990 111 - . alignment_id 3 ; Query gi|805766386|ref|XP_003700842.2| ; Align 1991 342 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 345 Query range: 0 -> 166 Target range: 495 -> 0 1 : MetAlaSerSerLysProIleValValHisThrGluLeuGluIleLeuGlyAspTyrSerLeuG : 22 |||::!!:!..!||| !!:!:|||..!.!.! !.!.:!! ! !.!!||||||||||||| MetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuG 495 : ATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCC : 432 23 : lnLeuAsnArgTrpMetLeuLysAlaIleGlyAlaTrpProLysSerHisSerThrLysPheGl : 43 ||! !||||||||| !:!!|||::!||||||.!!||||||:!! !|||:!!!!..!!|| lnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGln---PheSerSerAsnLeuGl 431 : AGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAG---TTCTCGTCGAACCTCGA : 372 44 : uLysIleValSerIleLeuLeuIleIleThrCysTyrPhePheValLeuIleThrValLeuPro : 64 |!:!! !:!!||| !:!!|||! !:!:! !|||||| ! :!!|||.!!:!!:!!:!!||| uArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIlePro 371 : GAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCT : 309 65 : CysIleLeuHisLeuIlePheGluAspAspAspLeuArgThrLysValIleIleLeuGlyProL : 86 ||| |||||||||!!:.!.||| ! ! !!!! !|||||||||! !||||||||||||| CysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyProL 308 : TGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGT : 243 87 : euSerHisTrpPheLeuGlyGlyValGlyTyrThrThrLeuLeuValHisAsnLysGluIleLy : 107 ||||||||||| ! !!! !! !:!!.!!||||||! !||||||:!!!....!||| ||| ! euSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHi 242 : TGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACA : 180 108 : sTrpCysValAspGlnValLysSerAspTrpArgAsnAlaThrArgProGluValGlnGlnLeu : 128 ! !|||:!!!!.:!!:!!!!!|||||||||!...!!|||||| ||| ::::::::: sHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluVal 179 : TCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtc : 117 129 : MetLeuLysAspAlaLysPheGlyArgTyrValValAlaPheCysAlaThrLeuThrGluPheS : 150 ||||||||| !!|||||||||.!!||||||!.!!.! !|||||||||! !!!!! !.!. !. MetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyG 116 : ATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTG : 51 151 : erThrAlaCysPheThrLeuValArgAlaLeuThrThrGluValIleVal : 166 !!! ! ! ! !:! !:!!:!!! !|||! !|||||| !|||:!!||| lyIleLeuGlyTyrCysValMetThrAlaSerThrThrMetValValVal 50 : GTATACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTG : 1 vulgar: gi|805766381|ref|XP_012135246.1| 0 166 . LHQN01027980.1 495 0 - 345 M 36 108 G 1 0 M 129 387 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1 495 345 - . gene_id 1 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1 495 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1 495 . - . insertions 0 ; deletions 1 LHQN01027980.1 exonerate:protein2genome:local similarity 1 495 345 - . alignment_id 1 ; Query gi|805766381|ref|XP_012135246.1| ; Align 496 1 108 ; Align 388 38 387 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 262 Query range: 263 -> 392 Target range: 5521 -> 4207 264 : PheSerPheIleSerHisIleGluAlaIleMetAsnGluIleCysPheMetGluLeuPheLy : 284 !:!||||||||||||!.!:!!||||||!!:||||||:!! ||||||:!!||||||.!.!: TyrSerPheIleSerArgLeuGluAlaMetMetAsnLysAlaCysPheLeuGluLeuMetAr 5521 : TACAGCTTCATATCGCGCTTAGAGGCAATGATGAACAAAGCGTGTTTCCTGGAGTTAATGAG : 5461 285 : sCysThrPheSerIleCysLeuLeuGlyTyrTyrIleLeuMet >>>> Target Intro : 299 !||||||.!.:!!|||||| !:!!||||||||||||!!!||| 927 bp gCysThrMetAlaIleCysAlaIleGlyTyrTyrIlePheMet++ 5460 : GTGCACGATGGCTATTTGCGCAATTGGATATTATATATTCATGgt................. : 5414 300 : n 1 >>>> GluTrpAlaGlnGlnAspPheArgThrMetThrGlyTyrIleSerValPheS : 316 ..! !!.!.!.::! !! !! ! ! ! |||||| !.!.! ++ArgGlnValAspArgThrGlyThrArgAsp***LeuMetIleSerAsnIleA 5413 : ........agCGACAGGTTGACAGAACAGGTACAAGAGACTAATTAATGATTAGCAACATAA : 4438 317 : erSerMetThrPheAsnIlePheMetLeuCysPheIleGlyGluThrIleLysGluGlnCys : 336 :!|||! |||...... ::::::! ! ! !..! ! !! ! !|||||| snSerSerThrIleGluLysTyrIleGlnGlnGlyThrAsnPro***AsnCys***GlnCys 4437 : ACTCTAGCacgattgaaaaatacatCCAACAAGGAACTAATCCATGAAATTGTTGACAGTGC : 4378 337 : AsnLysValGlyGluAlaValTyrMetSerAsnTrpTyrTyrLeuArgGluLysAspValLe : 357 ||||||||||||!.!|||||||||!!!:!!||||||||||||! !:!!!:! :!!|| LeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLe 4377 : TTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCT : 4315 358 : uAspLeuMetLeuIleIleSerArgSerCysValGluThrAsnIleThrAlaGlyLysIleV : 378 |||||||!!:|||||||||!!!|||||| !|||! ..!.!.|||||||||||||||||| uAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLysIleP 4314 : CGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaaaatat : 4252 379 : alHisMetSerPheTyrThrPheThrGlyValArgPheProAsn : 392 |||||||||.!!||||||||| !! !|||!!! !!||| heHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 4251 : tccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 4208 vulgar: gi|805766381|ref|XP_012135246.1| 263 392 . LHQN01027980.1 5521 4207 - 262 M 35 105 5 0 2 I 0 923 3 0 2 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4208 5521 262 - . gene_id 2 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 5417 5521 . - . LHQN01027980.1 exonerate:protein2genome:local exon 5417 5521 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 5415 5416 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4490 5416 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4490 4491 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4208 4489 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4208 4489 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4208 5521 262 - . alignment_id 2 ; Query gi|805766381|ref|XP_012135246.1| ; Align 5522 264 105 ; Align 4490 299 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 320 -> 379 Target range: 2017 -> 1855 321 : AsnIlePheMetLeuCysPheIleGlyGluThrIleLysGluGlnCysAsnLysValGlyGl : 341 |||||||||!!:||||||!:!|||||||||||| !.!|||||||||! AsnIlePheIleLeuCysTyrIleGlyGluThr---------------ThrLysValGlyGl 2017 : AATATATTCATACTTTGTTACATCGGAGAGACT---------------ACCAAAGTCGGAGG : 1972 342 : uAlaValTyrMetSerAsnTrpTyrTyrLeuArgGluLysAspValLeuAspLeuMetLeuI : 362 ! !|||||||||!!!.!.|||||| ||| !:!!||| !!.!|||! !!!!:!::!!| yLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGlyPheValMetI 1971 : AAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGGTTTTGTAATGA : 1909 363 : leIleSerArgSerCysValGluThrAsnIleThrAlaGlyLysIleValHis : 379 |||||||||||||| !!:!!! !! !!!.|||||||||||||||.!!|||:!! leIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheValTyr 1908 : TCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTATAC : 1856 vulgar: gi|805766381|ref|XP_012135246.1| 320 379 . LHQN01027980.1 2017 1855 - 111 M 11 33 G 5 0 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1856 2017 111 - . gene_id 3 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1856 2017 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1856 2017 . - . insertions 0 ; deletions 5 LHQN01027980.1 exonerate:protein2genome:local similarity 1856 2017 111 - . alignment_id 3 ; Query gi|805766381|ref|XP_012135246.1| ; Align 2018 321 33 ; Align 1985 337 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 275 Query range: 260 -> 363 Target range: 4581 -> 4091 261 : GluTrpAlaAsnHisAspTyrGlnSerValThrSerPhePheLeuValLeuCysSerMetSe : 281 ||||||.!!.!. !||| !|||! !:!! !!!!!:!.!!:!!..!||| !:!!:!: GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValVa 4581 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTGT : 4521 282 : rPheAsnMetPheIleValCysTyrIleGlyGluLysLeuSerGluGln >>>> Target : 298 ! ||| |||::::::|||||||||.!!!!:!:!|||!!!|||||| 9 lSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4520 : TtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt........... : 4468 299 : Intron 1 >>>> CysLysSerIleGlyGluThrValTyrMetThrAsnTrpTyrTyrL : 313 2 bp ||| !!.!:!!||||||..!||||||||||||:!!|||||||||| ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrL 4467 : ..............agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATC : 4333 314 : euProAsnLysAspIleLeuAspLeuIleMetIleIleSerArgSerHisMetMetThrLys : 333 |||||.!.!:! |||||||||||||||:!!||||||!!!||||||:!!:!!:!:..!:!! euProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGlu 4332 : TGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAA : 4273 334 : IleThrAlaGlyLysValValProMetSerPheAspThrPheAlaSer >>>> Target : 350 |||||||||||||||::: ||||||.!! !!||||||!.!..! 89 IleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4272 : ATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt............ : 4220 351 : Intron 2 >>>> ValIleLysThrGlyPheAlaTyrLeuAsnValLeuArgGln : 363 bp |||:!!||||||||||||||||||||||||:!!||| !!||| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGln 4219 : .............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAA : 4092 vulgar: gi|805766378|ref|XP_012135245.1| 260 363 . LHQN01027980.1 4581 4091 - 275 M 37 111 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4092 4581 275 - . gene_id 1 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4581 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4581 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4223 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 2 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 2 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 1 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4092 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4092 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4092 4581 275 - . alignment_id 1 ; Query gi|805766378|ref|XP_012135245.1| ; Align 4582 261 111 ; Align 4379 298 156 ; Align 4134 350 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 271 Query range: 0 -> 125 Target range: 375 -> 0 1 : MetGluLysIleAlaSerLeuIleLeuIlePheValCysGlnCysCysIleLeuIleThrValL : 22 :!:|||!:!! ! !|||! !||||||! ! ! :!!||| ! !...||||||.!!:!!:!!: LeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleI 375 : CTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAA : 312 23 : euProCysIleLeuTyrIleValLeuAspAspAspAspIleAlaGluLysLeuMetValValGl : 43 !!|||||| |||:!!:!!:!!|||!!: ! ! !.!! ! !|||:!!! :!!:!!|| leProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGl 311 : TCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGG : 249 44 : yProLeuSerHisTrpPheValGlyGlyCysAsnTyrThrThrLeuLeuLeuHisSerLysGlu : 64 |||||||||||||||| ! !! !! ! !!:!||||||! !|||||||||!.. !!||| yProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThr 248 : TCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACC : 186 65 : IleArgPheCysAlaGlnGlnMetLysSerAspTrpMetThrValThrArgLeuLysAspLeuG : 86 |||!.! !! !!.!.!.!!.|||:!!!!!||||||! |||..!|||||| ::: : IleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysG 185 : ATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaag : 120 87 : lnValMetLeuLysTyrSerLysLeuGlyArgTyrValValValPheCysAlaAlaPheMetGl : 107 ::|||||||||||||||:!!|||!!!.!!||||||!.!!.!:!!||||||||| !|||!!:!! luValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHi 119 : aagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACA : 57 108 : nGlyGlyValLeuCysPheCysAlaLeuArgAlaPheThrValGluThrValLeu : 125 .||||||:!!||| ! !:!|||!.!:!!! !|||! !|||..! !..!|||:!! sGlyGlyIleLeuGlyTyrCysValMetThrAlaSerThrThrMetValValVal 56 : CGGTGGTATACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTG : 1 vulgar: gi|805766378|ref|XP_012135245.1| 0 125 . LHQN01027980.1 375 0 - 271 M 125 375 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1 375 271 - . gene_id 2 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1 375 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1 375 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1 375 271 - . alignment_id 2 ; Query gi|805766378|ref|XP_012135245.1| ; Align 376 1 375 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 296 -> 340 Target range: 1990 -> 1858 297 : GlnCysLysSerIleGlyGluThrValTyrMetThrAsnTrpTyrTyrLeuProAsnLysAs : 317 :!! !! !.!:!!|||! !! !||||||||||||.!.|||||| ||| !!.!.||| GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysTh 1990 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAAC : 1930 318 : pIleLeuAspLeuIleMetIleIleSerArgSerHisMetMetThrLysIleThrAlaGlyL : 338 ! !|||! !!!!:!!|||||||||||||||||| !|||:!!! !|||||||||||||||| rAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyL 1929 : TGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAA : 1867 339 : ysValVal : 340 || !!||| ysPheVal 1866 : AATTCGTA : 1859 vulgar: gi|805766378|ref|XP_012135245.1| 296 340 . LHQN01027980.1 1990 1858 - 117 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1859 1990 117 - . gene_id 3 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1859 1990 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1859 1990 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1859 1990 117 - . alignment_id 3 ; Query gi|805766378|ref|XP_012135245.1| ; Align 1991 297 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 154 Query range: 230 -> 331 Target range: 4581 -> 4097 231 : GluProGlnLysSerAspProMetPheIleThrIleCysIleIleLeuGlnThrSerPheIl : 251 ||| ! !:!!|||||| !!....!.:!! !! ! !|||:!! !! ..!:!! !!:! GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValVa 4581 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTGT : 4521 252 : ePheCysSerPheIleLeuCysTyrIleGlyGlnLeuLeuValAspGlu >>>> Target : 268 ! :::|||::::::|||||||||.!!.!. !|||..!!!::!! 9 lSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4520 : TtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt........... : 4468 269 : Intron 1 >>>> AsnAsnValValGlyMetThrSerValMetLeuAspTrpTyrArgL : 283 2 bp ! !|||||| ..! ! !||| !||||||||| !| ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrL 4467 : ..............agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATC : 4333 284 : euProIleLysLysAlaArgCysLeuValLeuIleIleAlaMetSerAsnTyrProMetGln : 303 ||||| !:!!:! !! ! !|||:!!|||||||||.!! |||||| !:!::!! euProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGlu 4332 : TGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAA : 4273 304 : LeuThrAlaGlyLysIleValGluIleSerLeuValThrPheThrAsp >>>> Target : 320 :!!||||||||||||||| ...:::|||||| !|||||| !||| 89 IleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4272 : ATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt............ : 4220 321 : Intron 2 >>>> IleMetLysMetSerMetAlaTyrLeuAsnIleLeu : 331 bp :!!:!:|||! .!!.!.||||||||||||!!:||| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeu 4219 : .............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTT : 4098 vulgar: gi|805765819|ref|XP_003700910.2| 230 331 . LHQN01027980.1 4581 4097 - 154 M 37 111 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4098 4581 154 - . gene_id 1 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4581 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4581 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4223 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 2 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 2 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 1 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4098 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4098 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4098 4581 154 - . alignment_id 1 ; Query gi|805765819|ref|XP_003700910.2| ; Align 4582 231 111 ; Align 4379 268 156 ; Align 4134 320 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 200 Query range: 4 -> 161 Target range: 480 -> 15 5 : ThrAlaLysAlaGluGlnGluTyrLeuLysAsnValAspLeuSerValArgLeuAsnArgTrpI : 26 |||!.! .!!||| .!. ! !:! !|||! !|||:!!!:!! !||||||||| ThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpA 480 : ACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGG : 417 27 : leLeuLysProIleAlaAlaTrpProGluSerSerThrValSerProIleLysLysTyrLeuGl : 47 :!!||| !|||!.!.!!||||||:!!! !||| ||| !:!!:!!!:! !!:!!.. laMetLysSerIleGlyThrTrpProGlnPheSer------SerAsnLeuGluArgAsnIleSe 416 : CGATGAAAAGCATAGGCACATGGCCACAGTTCTCG------TCGAACCTCGAGAGAAACATCTC : 360 48 : yTrpPheValHisIleIleCysTyrSerLeuLeuSerPheLeuPheValProCysLeuThrPhe : 68 ! ! .!.:!!:!!:!:|||||||||!!! !:!! !|||! !.!.:!!||||||! ! ! ! rArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHis 359 : TCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCAC : 297 69 : LeuIleLeuGluValAsnAspThrTyrAsnArgIleLysLeuIleGlyProLeuSerPhePheL : 90 |||!!:|||||| !... ! !|||!..!:!:!:|||:!!:!!|||||||||||| !!::: LeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyProLeuSerHisTrpV 296 : CTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGG : 231 91 : euMetSerTyrLeuLysTyrTyrLeuMetLeuLeuHisLysAsnAspIleLeuLysCysValGl : 111 !!.!.!!! !:!!!..||| !:!!:!!||||||!..:::!!. !|||! ! ! ! !|||.! alPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPheValAs 230 : TGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTTTGTCAA : 168 112 : nGlnValGlnArgAspTrpAlaAsnAlaArgHisLeuAsnAspArgAsnIleMetGlyMetAsn : 132 .!!.:!!:!!! !|||||| !!...!! ... ... :::...:::||| !! ! !! nHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyr 167 : TCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGCTGAAGTAC : 105 133 : AlaAsnTyrGlyArgLysLeuValValValSerAlaPhePheMetTyrSerSerTyrIlePheP : 154 |||!!.!:!.!!||| ! !!.!:!! !!!!!|||.!!|||!!::!!.!!.!! :!! ! AlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleLeuGlyT 104 : GCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTATACTTGGAT : 39 155 : heTyrIleAlaValProIleThr : 161 :!! !:!! !..! !! !||| yrCysValMetThrAlaSerThr 38 : ATTGTGTTATGACAGCGTCCACC : 16 vulgar: gi|805766356|ref|XP_012135238.1| 4 161 . LHQN01027980.1 480 15 - 200 M 33 99 G 2 0 M 122 366 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 16 480 200 - . gene_id 1 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 16 480 . - . LHQN01027980.1 exonerate:protein2genome:local exon 16 480 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 16 480 200 - . alignment_id 1 ; Query gi|805766356|ref|XP_012135238.1| ; Align 481 5 99 ; Align 382 40 366 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765819|ref|XP_003700910.2| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 0 -> 160 Target range: 923 -> 437 1 : MetPheLeuLysThrLysSerGlyGlnValArgLeuLysValPheGlyProIleLeuAsnCysC : 22 :!:.!.|||:!!! !:!!!!! ! ! ..!!:!:!!|||:!!.!!||||||:!: !:!!!! ValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGlyProLeuSerHisTrpV 923 : GTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGG : 860 23 : ysMetGlnPheIleLysTyrThrIleLeuLeuLeuArgSerLysGlnIleArgAspCysLeuAs : 43 .!. .!!|||!..||||||!!:|||||||||||| !!||| |||||| !!! !!!!:! alPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAs 859 : TGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAA : 797 44 : pValIleArgGlnAspTrp<->IleGluAlaThrGluGluAspArgSerIleLeuHisSerArg : 63 ! !!!:..! |||||| ! ! :::||| :::...|||::: !.! ! nHisMetGluThrAspTrpArgThrThrMetArgLysGluLysLysGluIleMetLeuLysTyr 796 : TCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaagaaagaaataatgcTGAAGTAC : 734 64 : GlyMetLeuGlyArgLysLeuIleLeuThrValMetLeuThrLeuTyrGlyGlyGlyLeuCysT : 85 !.!! !!!.!!||| ! ! :!!:!! !! !:!! !:!!:!!|||||| !||| ! | AlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyT 733 : GCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGAT : 668 86 : yrArgThrIleIleProLeuMetLysGlyProIleThrLeuProAsnAsnValThrIle<->Ar : 105 || !!..!!!:! ! !!!!!! ! ! ! !:!!..!:!! !|||.!...!! !||| || yrCysValMetThrAlaPheThrThrMetValValValValGlyAsnGluThrMetIleLeuAr 667 : ATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCG : 605 106 : gProMetAlaCysAlaGlyTyrPheValPheIleAsnGluGlnGlnThrProThrTyrGluIle : 126 | !:!! !!! !! !||| ! !.!!:!! ! .!. !!.! !!! ! !!|||||| gValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnGluIle 604 : CGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATC : 542 127 : ValPheThrLeuGlnPhePheSerGlyIleIleThrTyrAlaThrSerSerGlySerTyrGlyI : 148 |||.!! !! !||||||.!!||||||.!!|||.!! !!.!!!:!:!!! !.!! ! .!!: ValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerL 541 : GTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCC : 476 149 : lePheThrValPheValLeuHisValCysSerLeuLeu : 160 !! !:!!.!.!...!! !|||!.!! !.!!! !||| euThrSerAlaLeuThrSerHisAlaSerGlyGlnLeu 475 : TTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTG : 438 vulgar: gi|805765819|ref|XP_003700910.2| 0 160 . LHQN01028641.1 923 437 - 100 M 49 147 G 0 3 M 55 165 G 0 3 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 438 923 100 - . gene_id 1 ; sequence gi|805765819|ref|XP_003700910.2| ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 438 923 . - . LHQN01028641.1 exonerate:protein2genome:local exon 438 923 . - . insertions 6 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 438 923 100 - . alignment_id 1 ; Query gi|805765819|ref|XP_003700910.2| ; Align 924 1 147 ; Align 774 50 165 ; Align 606 105 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 432 Query range: 0 -> 236 Target range: 1004 -> 296 1 : MetGluLysIleAlaSerLeuIleLeuIlePheValCysGlnCysCysIleLeuIleThrVa : 21 :!:|||!:!||| !|||! !||||||! ! ! :!!||| ! !...:!!|||.!!|||:! LeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIl 1004 : CTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGAT : 944 22 : lLeuProCysIleLeuTyrIleValLeuAspAspAspAspIleAlaGluLysLeuMetValV : 42 !:!!|||||| |||:!!:!!:!!|||!!: ! !!: !.!! ! !|||:!!! :!!: eIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIleL 943 : AATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATAC : 881 43 : alGlyProLeuSerHisTrpPheValGlyGlyCysAsnTyrThrThrLeuLeuLeuHisSer : 62 !!|||||||||||||||||| ! !! !! ! !!:!||||||! !|||||||||!.. !! euGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArg 880 : TCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGT : 821 63 : LysGluIleArgPheCysAlaGlnGlnMetLysSerAspTrpMetThrValThrArgLeuLy : 83 ||| |||||| !! ! !.!.!!.|||:!!!!!||||||! |||..!! ||| :: LysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGl 820 : AAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaagga : 758 84 : sAspLeuGlnValMetLeuLysTyrSerLysLeuGlyArgTyrValValValPheCysAlaA : 104 : ::::::||||||||||||:!!|||!!!.!!||||||!.!!.!:!!! !|||.!! uLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrI 757 : gaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGA : 695 105 : laPheMetGlnGlyGlyValLeuCysPheCysAlaLeuArgAlaPheThrValGluThrVal : 124 !|||!!:!!.||||||:!!||| ! !:!|||!.!:!!! !|||||||||..! !..!||| lePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValVal 694 : TCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTC : 635 125 : LeuIleGlyAsnAspThrLysAsnValHisLeuValProCysThrProSerLysLysValIl : 145 :!!:!!||||||!!:|||! !! !:!!!.!:!!:!!|||! !! !! !||| !:!!:! ValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLe 634 : GTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCT : 572 146 : eSerPheAspThrSerProThrAsnGluIlePheIleAlaLeuGlnPheLeuSerGlyPheI : 166 ! !! !!||||||!:! !!! !||||||||| !!:!! !! !||||||||||||||||||| uProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheI 571 : TCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTA : 509 167 : leValAsnSerThrAlaAlaGlyAlaPheSerPheAlaAlaValSerAlaAlaHisAlaTyr : 186 ||!.!|||!!!!:!||| !.!!!.!.!.|||.!!.!!::!!.! !.!!:!!||||||! ! leAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSer 508 : TAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCT : 449 187 : GlyGlnLeuAsnValLeuThrAspTrpIleLysGluLeuLeuAsnArgThrGlyLysPheAs : 207 |||||||||..!|||:!!! ! ! !|||:!!!!:!!!:!!!:! !.!! !!::: ! GlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArgGl 448 : GGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGG : 386 208 : pArgLysIleAspSerAsnLysIleGlyIleIleValAsnAsnHisLeuArgIleLeuThrP : 228 !:! ! ! !!! !:!!:!!||| !! !||||||.!.!!.|||||||||:!:|||! !! yLysAspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeuLys* 385 : GAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTGAAGT : 323 229 : heIleAlaAsnIleGluAspIleMet : 236 :!!..! :!:!!: |||:!! **ValCysLeuLeuAspLeuIleLeu 322 : AAGTATGTTTGTTGGATTTGATTTTG : 297 vulgar: gi|805766378|ref|XP_012135245.1| 0 236 . LHQN01028641.1 1004 296 - 432 M 236 708 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 297 1004 432 - . gene_id 1 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 297 1004 . - . LHQN01028641.1 exonerate:protein2genome:local exon 297 1004 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 297 1004 432 - . alignment_id 1 ; Query gi|805766378|ref|XP_012135245.1| ; Align 1005 1 708 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805765827|ref|XP_012135096.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor 22c-like [Megachile rotundata] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 361 Query range: 18 -> 305 Target range: 1073 -> 156 19 : AsnLeuSerThrGlnTrpCysArgTrpIleLeuLysProIleGlyValTrpProThrSerAs : 39 :!!! !||| !|||||| !|||||| :!!||| !||||||!.!|||||| !|||.. AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSe 1073 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTC : 1013 40 : pValThrGlyThrGlnLysCysMetTyrArgLeuIleAsnValMetCysTyrSerPheLeuS : 60 . :!!..! !:!!!:! !!!:! !|||:!!:!:||||||!!:||||||!!! :!! r---SerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValL 1012 : G---TCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTAC : 953 61 : erPheLeuCysValProGlyIleLeuTyrValIleLeuGluValGluAspValTyrAsnGln : 80 !||| ! :!!||| !! |||:!!|||!!:|||||| !||| ! !!|||!..:!! euPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLys 952 : TATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAA : 893 81 : IleLysPhePheGlyProSerSerPheCysMetMetAlaIleMetLysTyrTyrLeuMetIl : 101 :!:|||.!..!!||||||! !||| !!! :!!.!...!|||!!:!..||| !:!!:!!:! ValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLe 892 : GTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTT : 830 102 : eLeuHisGluAsnAspIleArgAspCysIleGlnArgIleGluLeuAspTrpLysAsnIleS : 122 :|||!.....!!. !|||||| !!! !.!!.!.!.!!!:||| !||||||!:!!..! ! uLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrM 829 : GCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGA : 767 123 : erHisAspAspAspLysLysIleMetValGluLysAlaLysPheGlyArgGlnLeuIleAla : 142 ... ::: |||:::||||||:!!:!! ! |||||||||.!!||| ! ! ! etArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIle 766 : tgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATT : 707 143 : LeuCysThrPhePheMetTyrAlaValSerArgSerGlyPheAlaPheTyrTyrValValLe : 163 ! !||||||.!!|||!!::!! .!!|||.!. ! |||! !|||:!! SerCysThrIlePheIleHis------------GlyGlyIleLeuGlyTyrCysValMetTh 706 : TCTTGTACGATCTTCATACAC------------GGTGGTATACTTGGATATTGTGTTATGAC : 656 164 : uProThrSerAlaAspLysIleGlnAlaAlaAspAlaAsnLeuThrPheIleProLeuAlaC : 184 ! !! !!!!.!! :!! !!.!!.!:!!! !!.!:!!! !!!. ! !||| !!! rAlaPheThrThrMetValValValValGlyAsnGluThrMetIleLeuArgValLeuProL 655 : AGCGTTCACCACGATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGT : 593 185 : ysProPheSerSerLeuIleIleAspThrArgTyrSerProThrAsnGluIleValPheLeu : 204 |||.!.! !!.! !:!!:!! ..! ! !:! !!! !||||||||||||.!!||| euProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeu 592 : TACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTG : 533 205 : LeuGlnValValAlaGlyAlaLeuIleHisSerIleAlaSerAlaAlaCysGlyLeuAlaAl : 225 ! !||| !!:!!:!!||| !:!! :!!!!!! !|||! !::!!.! .!!|||.!!:: SerGlnPheLeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSe 532 : TCACAGTTTCTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAG : 470 226 : aMetLeuAlaValHisAlaCysGlyGlnMetGluValLeuMetAsnTrpLeuLysHisLeuV : 246 ! |||.!! !||||||! !||||||:!!! |||:!!||| ! !:!!:!! !!!!!| rAlaLeuThrSerHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheV 469 : TGCTCTAACATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTG : 407 247 : al<->AspGlyArgSerAspMetGlyAspThrValAspAlaArgIleAlaSerValValSer : 265 || |||!.!||| !! ! !||| ! ! !! !..!||| !!!!!:!!|||..! alSerAspAlaArgArgArgGlyLysAspAspHisPheAspGluIleProThrIleValGlu 406 : TGAGTGATGCGAGACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAG : 347 266 : GlnHisValArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}TyrLeuTh : 275 :!!|||:!!|||:!:|||{!!} 68 bp {.}!:!:!!:! LysHisLeuArgValLeu{As}++ ++{n}PheIleSe 346 : AAACATTTGAGAGTGTTG{AA}gt.........................ag{C}TTCATATC : 249 276 : rArgThrGluGlyAlaLeuGlnLeuIleSerPheValGluPheLeuGlyCysThrLeuAspI : 296 !|||! !|||!.! !:!!.!. ! !!!|||:!!|||!!. ! !!||||||:!!! !| rArgIleGluAlaMetIleAsnLysAlaCysPheLeuGluLeuThrArgCysThrIleAlaI 248 : GCGCATAGAGGCAATGATAAACAAAGCGTGTTTCCTGGAGTTAACGAGGTGCACGATAGCTA : 186 297 : leCysLeuLeuGlyTyrTyrValIleMet : 305 |||||:!!||||||||||||:!!.!!||| leCysValLeuGlyTyrTyrIlePheMet 185 : TATGCGTACTTGGATATTATATATTCATG : 157 vulgar: gi|805765827|ref|XP_012135096.1| 18 305 . LHQN01028641.1 1073 156 - 361 M 21 63 G 1 0 M 109 327 G 4 0 M 93 279 G 0 3 M 25 75 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 157 1073 361 - . gene_id 1 ; sequence gi|805765827|ref|XP_012135096.1| ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1073 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1073 . - . insertions 3 ; deletions 5 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 157 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 157 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 157 1073 361 - . alignment_id 1 ; Query gi|805765827|ref|XP_012135096.1| ; Align 1074 19 63 ; Align 1011 41 327 ; Align 684 154 279 ; Align 402 247 75 ; Align 256 273 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 636 Query range: 0 -> 298 Target range: 1124 -> 156 1 : MetAlaSerSerLysProIleValValHisThrGluLeuGluIleLeuGlyAspTyrSerLe : 21 |||::!!:!..!||| !!:!:|||..!.!.! !.!.:!! ! !.!!||||||||||| MetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLe 1124 : ATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCT : 1064 22 : uGlnLeuAsnArgTrpMetLeuLysAlaIleGlyAlaTrpProLysSerHisSerThrLysP : 42 ||||! !||||||||| !:!!|||::!|||||||||||||||:!!||| |||:!!!!.. uGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSer---SerSerAsnL 1063 : CCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCC---TCGTCGAATC : 1004 43 : heGluLysIleValSerIleLeuLeuIleIleThrCysTyrPhePheValLeuIleThrVal : 62 !!|||!:!|||:!!||| !:!!|||! !:!:! !|||||| ! ||||||.!!|||:!! euGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIle 1003 : TCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATA : 944 63 : LeuProCysIleLeuHisLeuIlePheGluAspAspAspLeuArgThrLysValIleIleLe : 83 :!!|||||| ||||||:!!!!:.!.||| ! !!: !!!! !|||||||||! !||||| IleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIleLe 943 : ATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACT : 881 84 : uGlyProLeuSerHisTrpPheLeuGlyGlyValGlyTyrThrThrLeuLeuValHisAsnL : 104 ||||||||||||||||||| ! !!! !! !:!!.!!||||||! !||||||:!!!....!| uGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgL 880 : CGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTA : 818 105 : ysGluIleLysTrpCysValAspGlnValLysSerAspTrpArgAsnAlaThrArgProGlu : 124 || |||::: ! ! !!:!!!!.:!!:!!!!!|||||||||!...!!! ||| ||| ysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGlu 817 : AAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggag : 758 125 : ValGlnGlnLeuMetLeuLysAspAlaLysPheGlyArgTyrValValAlaPheCysAlaTh : 145 :::::::::||||||||| !!|||||||||.!!||||||!.!!.! !! !|||.!!! LysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIl 757 : aagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGAT : 695 146 : rLeuThrGluPheSerThrAlaCysPheThrLeuValArgAlaLeuThrThrGluValIleV : 166 !!!!! !.!. !.!!! ! ! ! !:! !:!!:!!! !|||!!!|||||| !|||:!!| ePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValV 694 : CTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCG : 632 167 : alValGlyAsnGluThrArgIleMetArgMetLeuProCysValProTyrArgGluLeuVal : 186 |||||||||||||||||! !|||:!!|||:!!||||||! ! !|||!:!! !|||:!! alValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeu 631 : TGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTT : 572 187 : ProValHisThrSerProThrTyrGluLeuMetLeuIleAlaGlnPheValSerGlyPheVa : 207 |||||| !!|||!:! !!! ! !!|||:!!:!:|||:!::!!||||||:!!|||||||||:! ProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIl 571 : CCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTAT : 509 208 : lIleSerCysAlaPheValGlyAlaPheSerLeuAlaThrValPheThrIleHisAlaHisS : 228 ! !:! !::! :!!.!!!.!.!.||||||.!!!:!!.!.!.||| !|||||| !. eAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerG 508 : AGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTG : 446 229 : erGlnLeuAsnValLeuMetMetSerIleThrGluLeuValAspGluSerArgGluLysSer : 248 !!||||||..!|||:!!|||:!!|||||| !!!:!!!|||..!!!::!!|||...!:!.!! lyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArgGly 445 : GCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGG : 386 249 : PheGlu<-><-><->ArgAspIleGlyAlaValValArgLysHisLeuSerIlePhe{Se} : 265 !!: !!!:||| !.!!:!!|||..!|||||||||!!!:!:!!.{!:} LysAspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeu{As}+ 385 : AAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG{AA}g : 324 266 : >>>> Target Intron 1 >>>> {r}PheIleSerHisIleGluAlaIleMetAsnG : 276 68 bp {!}|||||||||!.!|||||||||!!:!!:|||: + ++{n}PheIleSerArgIleGluAlaMetIleAsnL 323 : t.........................ag{C}TTCATATCGCGCATAGAGGCAATGATAAACA : 225 277 : luIleCysPheMetGluLeuPheLysCysThrPheSerIleCysLeuLeuGlyTyrTyrIle : 296 !! ||||||:!!|||||| !:!||||||.!.:!!||||||:!!||||||||||||||| ysAlaCysPheLeuGluLeuThrArgCysThrIleAlaIleCysValLeuGlyTyrTyrIle 224 : AAGCGTGTTTCCTGGAGTTAACGAGGTGCACGATAGCTATATGCGTACTTGGATATTATATA : 165 297 : LeuMet : 298 !!!||| PheMet 164 : TTCATG : 157 vulgar: gi|805766381|ref|XP_012135246.1| 0 298 . LHQN01028641.1 1124 156 - 636 M 37 111 G 1 0 M 212 636 G 0 9 M 14 42 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 157 1124 636 - . gene_id 1 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1124 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1124 . - . insertions 9 ; deletions 1 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 157 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 157 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 157 1124 636 - . alignment_id 1 ; Query gi|805766381|ref|XP_012135246.1| ; Align 1125 1 111 ; Align 1014 39 636 ; Align 369 251 42 ; Align 256 266 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 582 Query range: 10 -> 271 Target range: 1103 -> 326 11 : IleSerGlnLysGluLeuAspGlyLeuSerAspTyrSerLeuGlnLeuAsnArgTrpLeuLe : 31 :!!!!!:!!! .!.:!! !!.! !||||||||||||||||||! !||||||||| !:! ValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMe 1103 : GTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGAT : 1043 32 : uLysProIleGlyValTrpProLysSerPheTyrThrSerAsnIleGluLysIleValSerL : 52 !||| !||||||!.!||||||:!!||| :!!||||||:!!|||!:!|||:!!|||! tLysSerIleGlyAlaTrpProGlnSer------SerSerAsnLeuGluArgIleIleSerA 1042 : GAAAAGCATAGGCGCATGGCCACAGTCC------TCGTCGAATCTCGAGAGAATCATCTCTC : 986 53 : euIleSerAsnMetIleCysTyrCysSerIleValIleThrValValProCysIleLeuHis : 72 !|||! !|||:!!||||||||| !:!!:!!:!!.!!|||:!!:!!|||||| |||||| rgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIleProCysSerLeuHis 985 : GAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATCCCTTGTTCGCTGCAC : 926 73 : LeuThrPheGluAspIleAspPheArgThrLysLeuLysValPheGlyProMetThrHisTr : 93 :!!! !.!.||| ! !||| !||||||:!!|||:!!.!!||||||:!!!:!||||| ValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGlyProLeuSerHisTr 925 : GTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTG : 863 94 : pPheAlaGlyGlyIleAsnTyrThrThrLeuLeuValArgGlyGluGluIleArgHisCysM : 114 | ! ! !! !|||!:!||||||! !||||||:!!||| !!:!! |||||||||! !. pValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPheP 862 : GGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTT : 800 115 : etLysGlnMetGlnAsnAspTrpArgThrValSerSerProGluValGlnGlnValMetLeu : 134 !.!!.!!.|||:!!!.!||||||||||||..!! ||| :::::::::|||||| heAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLysLysGluIleMetLeu 799 : TCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaagaaagaaataatgcTG : 740 135 : LysAspAlaLysPheGlyArgAsnMetAlaThrPheCysThrValPheMetGlnGlyGlyVa : 155 ||| !!|||||||||.!!||| !! !|||! !! !||||||:!!|||!!:!!.||||||:! LysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIl 739 : AAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTAT : 677 156 : lLeuCysTyrCysAlaAlaMetAlaLeuThrLysGluIleValGlnValGlyAsnGluThrA : 176 !||| ! ||||||!.! !! |||!!!|||! ! !:!!||| !|||||||||||||||! eLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValValGlyAsnGluThrM 676 : ACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTGGAAACGAGACTA : 614 177 : rgThrIleHisThrLeuProIleAlaValTyrLysLysLeuIleProValAspThrSerPro : 196 !! !:!:!.!..!||||||:!! !!:!!|||||| !|||:!!||||||||||||!:! !! etIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThr 613 : TGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACT : 554 197 : ThrAsnGluIleValLeuAlaValGlnValLeuAlaAlaIleIleValAsnCysThrValVa : 217 ! !||||||||||||||| ! !||| !!|||:!!!.!.!!|||!.!||| !!:!!.!:! MetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAsnThrSerAlaIl 553 : ATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAACACCAGTGCGAT : 491 218 : lGlyAlaPheSerLeuAlaIleValPheAlaAlaHisAlaHisGlyGlnLeuAspValLeuA : 238 !.!!!.!.!.||||||.!!! !!.!.!..!!:!!|||||| !|||||||||! !|||:!!! eSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuGlyValValM 490 : CAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGGGCGTGGTTA : 428 239 : snMetTrpIleThrGluPheValAspGlnSerArgAsnSerSerLysLysValArgTrpAsn : 258 :!!! !||| !!!:||||||..!.!.:!!|||..!!!!.!!||| ! ! !!.!!:::!! etLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLysAspAspHisPheAsp 427 : TGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAGGACGATCATTTCGAC : 368 259 : GlyIleGlyValPheValAsnAsnHisThrAsnValLeu : 271 ! !||| !..!.!!|||.!.!!.||| !!..|||||| GluIleProThrIleValGluLysHisLeuArgValLeu 367 : GAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG : 327 vulgar: gi|805766386|ref|XP_003700842.2| 10 271 . LHQN01028641.1 1103 326 - 582 M 30 90 G 2 0 M 229 687 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 327 1103 582 - . gene_id 1 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 327 1103 . - . LHQN01028641.1 exonerate:protein2genome:local exon 327 1103 . - . insertions 0 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local similarity 327 1103 582 - . alignment_id 1 ; Query gi|805766386|ref|XP_003700842.2| ; Align 1104 11 90 ; Align 1014 43 687 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766356|ref|XP_012135238.1| PREDICTED: odorant receptor 63a-like [Megachile rotundata] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 277 Query range: 4 -> 267 Target range: 1109 -> 323 5 : ThrAlaLysAlaGluGlnGluTyrLeuLysAsnValAspLeuSerValArgLeuAsnArgTr : 25 |||!.! .!!||| .!. ! !:! !|||! !|||:!!!:!! !|||||||| ThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTr 1109 : ACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTGGAATCGATG : 1049 26 : pIleLeuLysProIleAlaAlaTrpProGluSerSerThrValSerProIleLysLysTyrL : 46 | :!!||| !|||!.!|||||||||:!!|||||| ||| !:!!:!!!:! !: pAlaMetLysSerIleGlyAlaTrpProGlnSerSer------SerAsnLeuGluArgIleI 1048 : GGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCG------TCGAATCTCGAGAGAATCA : 992 47 : euGlyTrpPheValHisIleIleCysTyrSerLeuLeuSerPheLeuPheValProCysLeu : 66 !!..! ! .!.:!!:!!:!:|||||||||!!! !:!! !||| !.!.:!!||||||! ! leSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIleProCysSer 991 : TCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATCCCTTGTTCG : 932 67 : ThrPheLeuIleLeuGluValAsnAspThrTyrAsnArgIleLysLeuIleGlyProLeuSe : 87 ! !:!!!!:|||||| !.!. ! !|||!..!:!:!:|||:!!:!!||||||||||| LeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGlyProLeuSe 931 : CTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAG : 869 88 : rPhePheLeuMetSerTyrLeuLysTyrTyrLeuMetLeuLeuHisLysAsnAspIleLeuL : 108 | !!:::!!.!.!!! !:!!!..||| !:!!:!!||||||!..:::!!. !|||! ! rHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgH 868 : CCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTC : 806 109 : ysCysValGlnGlnValGlnArgAspTrpAlaAsnAlaArgHisLeuAsnAspArgAsnIle : 128 ! ! ! !!.!.!!.:!!:!!! !|||||| !!...!!! ... ... :::...||| isPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLysLysGluIle 805 : ACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaagaaagaaata : 746 129 : MetGlyMetAsnAlaAsnTyrGlyArgLysLeuValValValSerAlaPhePheMetTyrSe : 149 ||| !! ! !!|||!!.!:!.!!||| ! !!.!:!! !!!!.!!.!!|||!!::!!.! MetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGl 745 : atgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGG : 683 150 : rSerTyrIlePhePheTyrIleAlaValProIleThrValGlyArgIleProAlaGlnAspG : 170 !.!! :!! !:!! !:!! !..! !!.!!|||..! ! !:!! !!.! !:!!! yGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValValGlyAsnG 682 : TGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTGGAAACG : 620 171 : lyAsnPheThrPheIlePheLeuProPheProSerSerMetArgIleThrAspTyrArgGln : 190 !!.!.!.! !!!. ! ! ||||||!!.|||! !! !! !!:!! ! ! ! ! luThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThr 619 : AGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACG : 560 191 : SerProValAsnGluIlePheTyrPheLeuGlnCysLeuAlaGlyValValLeuHisIleIl : 211 !:! !!:!!||||||||| !! !!!.! !|||! !|||:!!||| !!:!! !:!!! !! AsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAsnThrSe 559 : AATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAACACCAG : 497 212 : eThrValGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGlyGlnMetGlnI : 232 !.!!:!!.!!!.! ||||||.!!::!.!!.!..!! !||||||! !||||||:!! : rAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuGlyV 496 : TGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGGGCG : 434 233 : leLeuMetAsnTrpLeu<->GlyTyrLeuValAsnGlyArgAlaAspMetSerLysSerLeu : 251 !::!!||| ! !:!! ! !!:!:!! !:!!!.!||| ! !!.! ! ..!! ! alValMetLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLysAspAspHis 433 : TGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAGGACGATCAT : 374 252 : AspGlyArgIleAlaSerIleValGluGlnHisValArgIleLeuLys : 267 !! !..!||| !!!!!|||||||||:!!|||:!!|||:!:|||||| PheAspGluIleProThrIleValGluLysHisLeuArgValLeuLys 373 : TTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTGAAG : 324 vulgar: gi|805766356|ref|XP_012135238.1| 4 267 . LHQN01028641.1 1109 323 - 277 M 33 99 G 2 0 M 198 594 G 0 3 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 324 1109 277 - . gene_id 1 ; sequence gi|805766356|ref|XP_012135238.1| ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 324 1109 . - . LHQN01028641.1 exonerate:protein2genome:local exon 324 1109 . - . insertions 3 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local similarity 324 1109 277 - . alignment_id 1 ; Query gi|805766356|ref|XP_012135238.1| ; Align 1110 5 99 ; Align 1011 40 594 ; Align 414 238 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766339|ref|XP_003700911.2| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 319 Query range: 62 -> 315 Target range: 1067 -> 305 63 : SerIleGlnLeuSerArgTrpIleLeuLysProMetGlyLeuTrpProAsnSerSerGluTh : 83 |||:!!|||! !!:!|||||| :!!||| !!!:||| !||||||.!.|||||| SerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSer----- 1067 : AGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCG----- : 1010 84 : rSerCysLeuGluLysTyrLeuTyrArgLeuIleAsnValAlaCysTyrLeuLeuIlePheT : 104 ||| !||||||!:! !:!!! !|||:!!:!:|||||| !|||||| ! !:!!.!.! -SerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuP 1009 : -TCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTAT : 950 105 : yrLeuIleIleProCysGlyLeuTyrMetLeuLeuAspMetGluAsnLeuTyrLysGluIle : 124 :! !||||||||||||..!|||:!!:!::!!|||!!:! |||!.!!!!|||! !:!!:!: heThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysVal 949 : TCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTG : 890 125 : LysLeuPheGlyProMetIlePheCysValAlaAlaPheValLysTyrHisTrpLeuIleLe : 145 |||:!!.!!||||||:!!! ! !!! ||| !..!.!!:!!!..||| ! !|||:!:|| LysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLe 889 : AAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCT : 827 146 : uHisGlyAspAspIleArgGluCysMetGluHisIleLysTrpAspTrpLysAsnValGluT : 166 |!.. !! ! !||||||.!.! !.!..!.|||!!::!! ||||||!:!!....! uArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetA 826 : GCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtga : 764 167 : yrPheLysAspLysAspIleMetSerValAsnAlaAsnPheGlyLysArgIleValThrVal : 186 ::: |||:::|||||| ! ! !!|||!!.|||.!!::! ! !.!! ! ! rgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSer 763 : gaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCT : 704 187 : CysAlaLeuPheMetPheThrAlaCysThrPheTyrPheLeuIleIleProLeuAsnLeuAr : 207 |||.!!:!!|||!!: ! !!.! ! |||! !:!!!!:! ! !!!!!!.! !! CysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMe 703 : TGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGAT : 641 208 : gArgIleAlaThrAspAsnValSerPheIle<-><->ProValMetTyrProPheSerLysH : 226 ! !:!!!.!..!! |||! !!!!.!.||| !:!! !! |||.!.! !||| tValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysG 640 : GGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAG : 578 227 : isIleValAspIleArgTyrSerProValAsnGluIleValPheSerIleGlnPheValAla : 246 :!!:!! :!! ! !:! !!:!!||||||||||||.!!! ! !||||||:!!:!! lyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSer 577 : GGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCC : 518 247 : GlyValLeuIleAsnAlaIleThrValGlySerCysSerLeuAlaAlaValLeuAlaValHi : 267 ||| !!:!! |||.!!! !.!!:!!.!! ! ||||||.!!::!!.!|||.!! !|| GlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHi 517 : GGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACA : 455 268 : sAlaCysGlyGlnMetGluValLeuMetArgTrpLeuGluHisLeuVal<->AspGlyArgS : 287 ||||! !||||||:!!! |||:!!||| !! !:!!||| !!!!!||| |||!.!||| sAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgA 454 : CGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGAC : 392 288 : erAspMetSerGluSerValAspHisArgIleAlaLysValIleSerGlnHisValArgIle : 307 !! !!.!!!:..! ! ! !!..!||| !!! !:!!:!:..!:!!|||:!!|||:!: rgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgVal 391 : GCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTG : 332 308 : LeuLysPheLeuAlaLeuThrGlu : 315 ||||||! :!!..!||| !!!: LeuLys***ValCysLeuLeuAsp 331 : TTGAAGTAAGTATGTTTGTTGGAT : 306 vulgar: gi|805766339|ref|XP_003700911.2| 62 315 . LHQN01028641.1 1067 305 - 319 M 19 57 G 2 0 M 134 402 G 0 6 M 66 198 G 0 3 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 306 1067 319 - . gene_id 1 ; sequence gi|805766339|ref|XP_003700911.2| ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 306 1067 . - . LHQN01028641.1 exonerate:protein2genome:local exon 306 1067 . - . insertions 9 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local similarity 306 1067 319 - . alignment_id 1 ; Query gi|805766339|ref|XP_003700911.2| ; Align 1068 63 57 ; Align 1011 84 402 ; Align 603 218 198 ; Align 402 284 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: LHQN01028838.1 Habropoda laboriosa contig28838, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 263 -> 298 Target range: 647 -> 542 264 : PheSerPheIleSerHisIleGluAlaIleMetAsnGluIleCysPheMetGluLeuPheLysC : 285 !:!||||||||||||!.!|||||||||!!:||||||:!! ||||||:!!|||||| !:!| TyrSerPheIleSerArgIleGluAlaMetMetAsnLysAlaCysPheLeuGluLeuThrArgC 647 : TACAGCTTCATATCGCGCATAGAGGCAATGATGAACAAAGCGTGTTTCCTGGAGTTAACGAGGT : 584 286 : ysThrPheSerIleCysLeuLeuGlyTyrTyrIleLeuMet : 298 ||! !.!.:!!:!!||| !|||||||||||||||!!!||| ysMetIleAlaValCysAlaLeuGlyTyrTyrIlePheMet 583 : GCATGATAGCTGTATGCGCACTTGGATATTATATATTCATG : 543 vulgar: gi|805766381|ref|XP_012135246.1| 263 298 . LHQN01028838.1 647 542 - 125 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028838.1 exonerate:protein2genome:local gene 543 647 125 - . gene_id 1 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation . LHQN01028838.1 exonerate:protein2genome:local cds 543 647 . - . LHQN01028838.1 exonerate:protein2genome:local exon 543 647 . - . insertions 0 ; deletions 0 LHQN01028838.1 exonerate:protein2genome:local similarity 543 647 125 - . alignment_id 1 ; Query gi|805766381|ref|XP_012135246.1| ; Align 648 264 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 263 Query range: 0 -> 125 Target range: 495 -> 870 1 : MetGluLysIleAlaSerLeuIleLeuIlePheValCysGlnCysCysIleLeuIleThrValL : 22 :!:|||!:!! ! !|||! !||||||! ! ! :!!||| ! !...||||||.!!:!!:!!: LeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleI 496 : CTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAA : 559 23 : euProCysIleLeuTyrIleValLeuAspAspAspAspIleAlaGluLysLeuMetValValGl : 43 !!|||||| |||:!!:!!:!!|||!!: ! ! !.!! ! !|||:!!! :!!:!!|| leProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGl 560 : TCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGG : 622 44 : yProLeuSerHisTrpPheValGlyGlyCysAsnTyrThrThrLeuLeuLeuHisSerLysGlu : 64 | !!|||||||||||| ! !! !! ! !!:!||||||! !|||||||||!.. !!||| ySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThr 623 : TTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACC : 685 65 : IleArgPheCysAlaGlnGlnMetLysSerAspTrpMetThrValThrArgLeuLysAspLeuG : 86 |||!.! !! !!.!.!.!!.|||:!!!!!||||||! |||..!|||||| ::: : IleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysG 686 : ATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaag : 751 87 : lnValMetLeuLysTyrSerLysLeuGlyArgTyrValValValPheCysAlaAlaPheMetGl : 107 ::|||||||||||||||:!!|||!!!.!!||||||!.!!.!:!!||||||||| !|||!!:!! luValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHi 752 : aagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACA : 814 108 : nGlyGlyValLeuCysPheCysAlaLeuArgAlaPheThrValGluThrValLeu : 125 .||||||:!!||| ! !:!|||!.!:!!! !|||! !|||..! !..!|||:!! sGlyGlyIleLeuGlyTyrCysValMetThrAlaSerThrThrMetValValVal 815 : CGGTGGTATACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTG : 870 vulgar: gi|805766378|ref|XP_012135245.1| 0 125 . LHQN01028951.1 495 870 + 263 M 125 375 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 496 870 263 + . gene_id 1 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 496 870 . + . LHQN01028951.1 exonerate:protein2genome:local exon 496 870 . + . insertions 0 ; deletions 0 LHQN01028951.1 exonerate:protein2genome:local similarity 496 870 263 + . alignment_id 1 ; Query gi|805766378|ref|XP_012135245.1| ; Align 496 1 375 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 373 Query range: 10 -> 169 Target range: 396 -> 867 11 : IleSerGlnLysGluLeuAspGlyLeuSerAspTyrSerLeuGlnLeuAsnArgTrpLeuLeuL : 32 :!!!!!:!!! .!.:!! !!.! !||||||||||||||||||! !||||||||| !:!!| ValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetL 397 : GTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGA : 460 33 : ysProIleGlyValTrpProLysSerPheTyrThrSerAsnIleGluLysIleValSerLeuIl : 53 || !||||||..!||||||:!! !:!:!!||||||:!!|||!:!! !:!!|||! !|| ysSerIleGlyThrTrpProGln------PheSerSerAsnLeuGluArgAsnIleSerArgIl 461 : AAAGCATAGGCACATGGCCACAG------TTCTCGTCGAACCTCGAGAGAAACATCTCTCGAAT : 517 54 : eSerAsnMetIleCysTyrCysSerIleValIleThrValValProCysIleLeuHisLeuThr : 74 |! !|||:!!||||||||| !:!!|||:!!.!!:!!:!!:!!|||||| |||||||||! ! eLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMet 518 : ATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATG : 580 75 : PheGluAspIleAspPheArgThrLysLeuLysValPheGlyProMetThrHisTrpPheAlaG : 96 .!.||| ! !||| !||||||:!!|||:!!.!!||| !!:!!!:!|||||| ! ! LeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheC 581 : CTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCT : 646 97 : lyGlyIleAsnTyrThrThrLeuLeuValArgGlyGluGluIleArgHisCysMetLysGlnMe : 117 !! !|||!:!||||||! !||||||:!!||| !!:!! |||!.!|||! !:!:!!.!!.|| ysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPheValAsnHisMe 647 : GTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTTTGTCAATCATAT : 709 118 : tGlnAsnAspTrpArgThrValSerSerProGluValGlnGlnValMetLeuLysAspAlaLys : 138 |:!!!.!||||||||||||..!::: ||| ::::::|||||||||||| !!|||||| tGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLys 710 : GGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAA : 772 139 : PheGlyArgAsnMetAlaThrPheCysThrValPheMetGlnGlyGlyValLeuCysTyrCysA : 160 |||.!!||| !! !|||! !||||||.!!:!!|||!!:!!.||||||:!!||| ! ||||||! PheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleLeuGlyTyrCysV 773 : TTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACACGGTGGTATACTTGGATATTGTG : 838 161 : laAlaMetAlaLeuThrLysGluIleVal : 169 .! !! |||! !|||! ! !:!!||| alMetThrAlaSerThrThrMetValVal 839 : TTATGACAGCGTCCACCACGATGGTTGTC : 867 vulgar: gi|805766386|ref|XP_003700842.2| 10 169 . LHQN01028951.1 396 867 + 373 M 29 87 G 2 0 M 128 384 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 397 867 373 + . gene_id 1 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 397 867 . + . LHQN01028951.1 exonerate:protein2genome:local exon 397 867 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 397 867 373 + . alignment_id 1 ; Query gi|805766386|ref|XP_003700842.2| ; Align 397 11 87 ; Align 484 42 384 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 333 -> 386 Target range: 212 -> 53 334 : GluGlnCysAsnLysValGlyGluAlaValTyrMetSerAsnTrpTyrTyrLeuArgGluLysA : 355 |||:!! !!.!|||||||||! ! !|||||||||!!!.!.|||||| ||| !:!!||| GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 356 : spValLeuAspLeuMetLeuIleIleSerArgSerCysValGluThrAsnIleThrAlaGlyLy : 376 !!.!|||! !!!!:!::!!||||||||||||||| !!:!!! !! !!!.|||||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 377 : sIleValHisMetSerPheTyrThrPheThr : 386 |.!!|||:!! !!!! !:!..! ||| sPheValTyr***ThrSerPheValAlaThr 85 : ATTCGTATACTGAACATCGTTTGTCGCAACA : 54 vulgar: gi|805766381|ref|XP_012135246.1| 333 386 . LHQN01029187.1 212 53 - 115 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 54 212 115 - . gene_id 1 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 54 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 54 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 54 212 115 - . alignment_id 1 ; Query gi|805766381|ref|XP_012135246.1| ; Align 213 334 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 340 -> 386 Target range: 212 -> 74 341 : LysGlnCysAsnArgIleAlaAspValIleTyrSerThrAsnTrpTyrTyrLeuProCysLysA : 362 :!!:!! !!.!!:!:!!!.!! !:!:|||! !|||.!.|||||| ||| !! |||! GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 363 : snValLeuAspLeuThrValIleIleThrArgSerSerMetValThrLysIleThrAlaGlyLy : 383 .!!.!|||! !!!!..!:!!||||||:!!|||||||||||||||! !||||||||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 384 : sIleIleTyr : 386 |.!!:!!||| sPheValTyr 85 : ATTCGTATAC : 75 vulgar: gi|805766386|ref|XP_003700842.2| 340 386 . LHQN01029187.1 212 74 - 112 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 75 212 112 - . gene_id 1 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 75 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 75 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 75 212 112 - . alignment_id 1 ; Query gi|805766386|ref|XP_003700842.2| ; Align 213 341 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 295 -> 340 Target range: 212 -> 77 296 : GluGlnCysLysSerIleGlyGluThrValTyrMetThrAsnTrpTyrTyrLeuProAsnLysA : 317 |||:!! !! !.!:!!|||! !! !||||||||||||.!.|||||| ||| !!.!.||| GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 318 : spIleLeuAspLeuIleMetIleIleSerArgSerHisMetMetThrLysIleThrAlaGlyLy : 338 ! !|||! !!!!:!!|||||||||||||||||| !|||:!!! !||||||||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 339 : sValVal : 340 | !!||| sPheVal 85 : ATTCGTA : 78 vulgar: gi|805766378|ref|XP_012135245.1| 295 340 . LHQN01029187.1 212 77 - 122 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 78 212 122 - . gene_id 1 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 78 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 78 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 78 212 122 - . alignment_id 1 ; Query gi|805766378|ref|XP_012135245.1| ; Align 213 296 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766381|ref|XP_012135246.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 320 -> 379 Target range: 85 -> 247 321 : AsnIlePheMetLeuCysPheIleGlyGluThrIleLysGluGlnCysAsnLysValGlyGluA : 342 |||||||||!!:||||||!:!|||||||||||| !.!|||||||||! ! AsnIlePheIleLeuCysTyrIleGlyGluThr---------------ThrLysValGlyGlyL 86 : AATATATTCATACTTTGTTACATCGGAGAGACT---------------ACCAAAGTCGGAGGAA : 134 343 : laValTyrMetSerAsnTrpTyrTyrLeuArgGluLysAspValLeuAspLeuMetLeuIleIl : 363 !|||||||||!!!.!.|||||| ||| !:!!||| !!.!|||! !|||:!::!!||||| ysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGlyLeuValMetIleIl 135 : AAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGGTTTGGTAATGATCAT : 197 364 : eSerArgSerCysValGluThrAsnIleThrAlaGlyLysIleValHis : 379 |||||||||| !!:!!! !! !!!.|||||||||||||||.!!|||:!! eSerArgSerSerMetValIleLysIleThrAlaGlyLysPheValTyr 198 : CTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTATAC : 247 vulgar: gi|805766381|ref|XP_012135246.1| 320 379 . LHQN01048470.1 85 247 + 115 M 11 33 G 5 0 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 86 247 115 + . gene_id 1 ; sequence gi|805766381|ref|XP_012135246.1| ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 86 247 . + . LHQN01048470.1 exonerate:protein2genome:local exon 86 247 . + . insertions 0 ; deletions 5 LHQN01048470.1 exonerate:protein2genome:local similarity 86 247 115 + . alignment_id 1 ; Query gi|805766381|ref|XP_012135246.1| ; Align 86 321 33 ; Align 119 337 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766386|ref|XP_003700842.2| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 341 -> 386 Target range: 112 -> 247 342 : GlnCysAsnArgIleAlaAspValIleTyrSerThrAsnTrpTyrTyrLeuProCysLysAsnV : 363 :!! !!.!!:!:!!!.!! !:!:|||! !|||.!.|||||| ||| !! |||!.!! GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrA 113 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTG : 176 364 : alLeuAspLeuThrValIleIleThrArgSerSerMetValThrLysIleThrAlaGlyLysIl : 384 .!|||! !|||..!:!!||||||:!!|||||||||||||||! !||||||||||||||||||.! laLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPh 177 : CTCTCGGTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATT : 239 385 : eIleTyr : 386 !:!!||| eValTyr 240 : CGTATAC : 247 vulgar: gi|805766386|ref|XP_003700842.2| 341 386 . LHQN01048470.1 112 247 + 115 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 113 247 115 + . gene_id 1 ; sequence gi|805766386|ref|XP_003700842.2| ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 113 247 . + . LHQN01048470.1 exonerate:protein2genome:local exon 113 247 . + . insertions 0 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 113 247 115 + . alignment_id 1 ; Query gi|805766386|ref|XP_003700842.2| ; Align 113 342 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766378|ref|XP_012135245.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 296 -> 340 Target range: 112 -> 244 297 : GlnCysLysSerIleGlyGluThrValTyrMetThrAsnTrpTyrTyrLeuProAsnLysAspI : 318 :!! !! !.!:!!|||! !! !||||||||||||.!.|||||| ||| !!.!.||| ! GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrA 113 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTG : 176 319 : leLeuAspLeuIleMetIleIleSerArgSerHisMetMetThrLysIleThrAlaGlyLysVa : 339 !|||! !|||:!!|||||||||||||||||| !|||:!!! !|||||||||||||||||| ! laLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPh 177 : CTCTCGGTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATT : 239 340 : lVal : 340 !||| eVal 240 : CGTA : 244 vulgar: gi|805766378|ref|XP_012135245.1| 296 340 . LHQN01048470.1 112 244 + 121 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 113 244 121 + . gene_id 1 ; sequence gi|805766378|ref|XP_012135245.1| ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 113 244 . + . LHQN01048470.1 exonerate:protein2genome:local exon 113 244 . + . insertions 0 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 113 244 121 + . alignment_id 1 ; Query gi|805766378|ref|XP_012135245.1| ; Align 113 297 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759031|ref|XP_012150706.1| PREDICTED: odorant receptor 67c-like [Megachile rotundata] Target: KQ414583.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold34, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 155 -> 233 Target range: 619735 -> 619969 156 : MetLysTyrAsnAspSerLysLeuPhePheArgAlaTyrPheProTyrAspValAsnV : 175 |||||| !.. !!..! |||!!..!.!:!|||!::!:!||||||:!!|||!..: MetLysArgThrTyrGlnLeuLeuLeuIleLysAlaTrpTyrProTyrAsnValThrI 619736 : ATGAAACGGACGTATCAACTTTTATTGATAAAAGCATGGTATCCTTATAATGTAACAA : 619793 176 : alSerProAsnPheGlnLeuThrMetPheAlaGlnPheValAlaAlaMetTyrGlyAl : 194 !!|||||| !!:::::...|||:::... ||| !!|||!.!!.!! ..... leSerProAlaTyrGluPheThrIleLeuHisGlnValValGlyValThrValAsnCy 619794 : TTTCGCCAGCTTAtgaatttactattttacatCAAGTCGTGGGTGTCACTGtaaattg : 619850 195 : aIleThrTyrThrAlaValAspThrPheValAlaMetLeuIleLeuHisValCysGly : 213 .|||... ..!|||:!!|||||||||:!!.!! !!!|||:!! !!.!||| !! sIleAsnAsnValAlaIleAspThrPheIleThrGlyPheIleIleThrAlaCysCys 619851 : tattaataatGTAGCAATAGATACTTTTATAACAGGTTTTATAATAACTGCTTGTTGC : 619907 214 : GlnLeuGluAsnLeuHisGlyAspIleLysArgLeuLeuSerSerGlnGluLysHisP : 233 |||||| ! !||| ! !:!!|||... !:!!! !! !..! !||||||.!.| GlnLeuThrLeuLeuSerTyrAsnIleSerSerIleHisTyrGluAlaGluLysGluP 619908 : CAATTGACACTCTTAAGTTATAACATCTCTTCGATACACTATGAAGCGGAGAAAGAAT : 619967 234 : he : 233 || he 619968 : TT : 619969 vulgar: gi|805759031|ref|XP_012150706.1| 155 233 . KQ414583.1 619735 619969 + 121 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414583.1 exonerate:protein2genome:local gene 619736 619969 121 + . gene_id 1 ; sequence gi|805759031|ref|XP_012150706.1| ; gene_orientation . KQ414583.1 exonerate:protein2genome:local cds 619736 619969 . + . KQ414583.1 exonerate:protein2genome:local exon 619736 619969 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local similarity 619736 619969 121 + . alignment_id 1 ; Query gi|805759031|ref|XP_012150706.1| ; Align 619736 156 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754586|ref|XP_012138654.1| PREDICTED: odorant receptor 49a-like isoform X1 [Megachile rotundata] Target: KQ414588.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold11, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 302 -> 386 Target range: 776375 -> 776688 303 : AlaPheArgIleAlaMetPheLeuPheGlyGlnGlnPheHisLeuTyrThrLeuSerL : 322 !.!!:! !:!:..!! |||:!!.!. !||| ! ! |||:!! ! !|||!!!| ValTyrLeuLeuCysThrPheIleMetIleGlnLeuValHisValLeuTyrLeuThrL 776376 : GTGTACTTATTGTGCACATTTATCATGATTCAATTGGTACACGTACTTTATCTAACTC : 776433 323 : euProGlyGlnValLeuLeuAspArgSerSerGluLeuSerAspAsn{Il} >>>> : 338 ||||||||||| !!:!!:!!||| !!:!..!|||:!!|||!!::::{||} euProGlyGlnPheValIleAspAlaAsnGluGluIleSerGluSer{Il}++ 776434 : TTCCAGGACAATTCGTGATCGACGCGAACGAGGAAATCTCCGAATCG{AT}gt..... : 776485 339 : Target Intron 1 >>>> {e}TyrCysSerLysTrpHisGluIleProValLys : 349 61 bp {|}||| !!:!! !|||:!!.!.! ! ! !!:! ++{e}TyrSerAlaLeuTrpTyrAsnSerAspLysArg 776486 : ....................ag{A}TACAGCGCTTTGTGGTATAACAGCGACAAGAGA : 776575 350 : TyrGlnValIleLeuHisIleMetLeuThrArgSerIleArgProCysLysLeuThrA : 369 ||| !:!:!!! :!! !|||! !!.!!!!:!! ! !! !:!!:!!|||| ThrGlnSerLeuPheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrA 776576 : ACGCAATCGTTGTTTGTATTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAACAG : 776635 370 : laGlyGlyLeuTyrAspMetAsnIleGluSerPheGlyThrMetPheLysSer : 386 ||||||||||| ! ||||||:!::!!||||||..! !:!: :::||| laGlyGlyLeuIleThrMetAsnLeuGlnSerPheSerGluValThrArgSer 776636 : CCGGTGGACTAATTACAATGAACTTGCAAAGTTTCTCAGAGGTAACACGTTCA : 776688 vulgar: gi|805754586|ref|XP_012138654.1| 302 386 . KQ414588.1 776375 776688 + 126 M 35 105 S 0 2 5 0 2 I 0 57 3 0 2 S 1 1 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414588.1 exonerate:protein2genome:local gene 776376 776688 126 + . gene_id 1 ; sequence gi|805754586|ref|XP_012138654.1| ; gene_orientation + KQ414588.1 exonerate:protein2genome:local cds 776376 776482 . + . KQ414588.1 exonerate:protein2genome:local exon 776376 776482 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local splice5 776483 776484 . + . intron_id 1 ; splice_site "GT" KQ414588.1 exonerate:protein2genome:local intron 776483 776543 . + . intron_id 1 KQ414588.1 exonerate:protein2genome:local splice3 776542 776543 . + . intron_id 0 ; splice_site "AG" KQ414588.1 exonerate:protein2genome:local cds 776544 776688 . + . KQ414588.1 exonerate:protein2genome:local exon 776544 776688 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local similarity 776376 776688 126 + . alignment_id 1 ; Query gi|805754586|ref|XP_012138654.1| ; Align 776376 303 105 ; Align 776545 339 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383861644|ref|XP_003706295.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 983 Query range: 0 -> 400 Target range: 1308263 -> 1305882 1 : MetGlyLysProSerGluAsnThrIleAspTyrTyrIleGlnProAsnLysIleLe : 19 ||| !:!!||||||:!!!..:!!|||||||||||||||! !|||||||||||||| MetLysGluProSerLysThrSerIleAspTyrTyrIleLeuProAsnLysIleLe 1308263 : ATGAAAGAACCCTCTAAAACGTCGATCGACTATTATATACTACCGAATAAAATCCT : 1308209 20 : uCysSerIleTyrGlyLeuTrpProThrAspGluGluArgThrThrSerLysGlnV : 38 ||||.!!!!: !|||:!!||||||! !||||||:!!!!!:!!||| !!! :!!: uCysGlyMetAlaGlyValTrpProIleAspGluLysSerSerThrArgThrLysL 1308208 : GTGCGGTATGGCCGGTGTCTGGCCTATCGACGAGAAAAGTTCAACGCGTACCAAAC : 1308152 39 : alLeuAlaValValHisLeuValIleSerValIleIleValCysSerValPheVal : 56 !!!!!||| ! !!!..|||:!!.!!.!!:!!:!: !:!! !|||:!!!!.||| euPheAlaTyrPheArgLeuIlePheGlyLeuValAlaLeuAsnSerMetLeuVal 1308151 : TATTCGCATACTTTCGGCTGATATTCGGATTAGTGGCACTCAATAGCATGTTAGTG : 1308098 57 : ProGluValIleIleLeuThrThrLysTrpArgAspLeuSerIleLeuAla{G} : 74 ||||||:!!!!:!!::!!! !:!!!!.||| !!:!!|||!!!|||||||||{|} ProGluIleMetMetValIleSerAsnTrpGlyAsnLeuArgIleLeuAla{G}+- 1308097 : CCAGAAATTATGATGGTAATATCGAATTGGGGCAACTTAAGGATCCTAGCA{G}gc : 1308043 75 : >>>> Target Intron 1 >>>> {ly}AlaGlyThrLeuThrLeuThrMetT : 83 82 bp {||}!.!||| !:!! ! !|||:!: ++{ly}ValGlyCysValLeuThrThrLeuG 1308042 : .........................ag{GA}GTAGGATGCGTTTTAACAACACTCG : 1307935 84 : hrGlnPheLeuPheLysThrIleTyrLeuThrThrLysArgAspThrAlaHisArg : 101 !|||! |||||||||||||||||||||! !! !!:!||||||! !.!!:!!||| lyGlnSerLeuPheLysThrIleTyrLeuIleMetArgArgAspLysThrTyrArg 1307934 : GGCAATCGTTATTCAAAACGATTTACCTAATAATGAGAAGGGATAAAACCTACAGA : 1307881 102 : LeuLeuValGluLeuArgSerLeuTrpValThrThrAspAspProValGluArgGl : 120 |||! ! !|||:!!|||..!|||||| !:!!|||||||||||| !|||||||| LeuTyrTyrGluIleArgAspLeuTrpHisSerThrAspAspProLysGluArgGl 1307880 : CTTTACTACGAAATACGTGATCTGTGGCATTCTACCGACGATCCCAAAGAGAGACA : 1307824 121 : nSerTyrGluValPheAlaTyrTrpGlyArgIleSerThrIleGlyPhePheMetS : 139 |!:!!:!||| !.!!|||||||||!.!|||! !! !||||||! !|||!:! !: nAsnPheGluAsnLeuAlaTyrTrpAlaArgThrIleThrIleValPheTyrSerA 1307823 : GAACTTCGAAAATCTCGCTTATTGGGCAAGAACAATTACAATAGTCTTTTACTCGG : 1307767 140 : erAlaValGlySerThrSerLeuPheLeuValThrAlaThrLeuAspCysPheGlu : 157 !!..!:!! !!!:!..!! ! !||| ! !!.!!||||||! !|||! !||| ! laCysMetTrpAsnValPheThrPheThrPheAlaAlaThrHisAspTyrPheMet 1307766 : CCTGCATGTGGAACGTGTTCACATTCACGTTTGCTGCGACCCACGATTATTTCATG : 1307713 158 : AspValGluAsn<->SerAsn<->ArgThrAsnArgHisLeuProTyrAspVal{T : 174 !! ! ! ||| |||||| ..!! !!:!!:!|||||||||!:!!!:|||{| IleGluTyrAsnIleSerAsnAlaGluLysSerLysHisLeuProPheGluVal{T 1307712 : ATCGAATACAACATCAGCAACGCTGAAAAGAGCAAACACTTGCCCTTCGAAGTC{T : 1307656 175 : r} >>>> Target Intron 2 >>>> {p}GlnGluLeuAspPheLeuLysS : 182 |} 304 bp {|} ! ! ! !|||.!! ! !| r}++ ++{p}TyrGlyThrAspIleThrAlaS 1307655 : G}gt.........................ag{G}TATGGAACAGATATCACAGCAT : 1307328 183 : erProGluPheGluValIleTyrAlaCysGlnIleLeuAlaThrLeuAsnAlaCys : 200 ||||| ||||||:!! !!:!!.!||||||:!::!!|||..! ! !!.!..! erProLeuPheGluIleAlaPheValCysGlnLeuIleAlaValAlaPheValAla 1307327 : CTCCTCTCTTCGAAATCGCTTTCGTTTGTCAACTGATTGCGGTTGCATTTGTGGCC : 1307274 201 : CysAlaValCysGlyMetAspGlyMetCysTrpThrThrIleLeuTyrLeuSerGl : 219 ..!:!!..!! |||:!!|||||| ||| !||||||||||||:!!:!!||||| AlaSerThrSerGlyLeuAspGlySerCysMetThrThrIleLeuHisValSerGl 1307273 : GCCTCAACCTCAGGCTTGGATGGATCATGTATGACCACGATTTTACACGTATCTGG : 1307217 220 : yGlnPheArgLeuIleThrThrTrpLeuAsnAsnIleGlyValGluMetAsnTyrL : 238 |||||||!:!||||||!:!||||||:!!!:!!!.!!:|||||||||! ||| !| yGlnPheLysLeuIleSerThrTrpValSerLysMetGlyValGluThrAsnValL 1307216 : ACAATTCAAATTAATCAGTACGTGGGTCAGCAAAATGGGAGTAGAAACAAATGTCA : 1307160 239 : ysProHisProLysAspCysSerValLysValAlaAlaAspLeuValLysCysIle : 256 ||||| ! !! !||| !|||:!!! !!.!||||||:!!||||||||| ysPro---------ValTyrSerArgLysLeuGluValAspLeuIleLysCysIle 1307159 : AACCT---------GTTTATTCGCGAAAATTAGAAGTGGACCTGATCAAATGCATT : 1307115 257 : ArgHisHisGlnArgLeuSer{Ly} >>>> Target Intron 3 >>>> {s : 264 |||||||||||||||:!!! !{!!} 169 bp {. ArgHisHisGlnArgMetIle{As}++ ++{n 1307114 : CGTCATCACCAACGAATGATA{AA}gt.........................ag{C : 1306920 265 : }ValValLysAspValAsnSerLeuLeuIleProIleIlePheIleGlnLeuLeuT : 283 }||||||!!.|||||||||:::|||... ||||||:!!|||:!!|||||||||| }ValValAsnAspValAsnAsnLeuPheThrProIleValPheValGlnLeuLeuT 1306919 : }GTGGTGAATGatgtgaataatttatttactccCATCGTTTTCGTACAACTTCTTA : 1306865 284 : hrSerGlyValGlnIleCysLeuSerGlyPheAlaValLeuSerAsnAsnGlyGly : 301 ||||||||:!! !||||||||||||||||||||||||!!!..!|||:!!!.! !! hrSerGlyIleValIleCysLeuSerGlyPheAlaValPheAspAsnAspAlaArg 1306864 : CAAGCGGAATAGTAATTTGTTTAAGTGGATTCGCGGTTTTCGATAACGACGCCCGT : 1306811 302 : AspAsnLeuLeuLysPheSerCysPheLeuSerSerValLeuValGlnLeuValMe : 320 !:!!:!!||||||!:! !! !!:!|||||||||:!!! !:!!||||||:!!:! ThrAspIleLeuLysTyrValSerTyrLeuSerSerIleTrpLeuGlnLeuLeuLe 1306810 : ACCGATATTCTGAAATACGTATCTTATTTGTCCTCGATTTGGTTGCAACTTTTGTT : 1306754 321 : tTyrCysTrpProGlyGluIleLeuIleGlnGluSerGlnGluValGlyTyrAlaA : 339 :!::|||! !|||||||||||||||:!!||||||||| !|||:!!|||:!!!.!! uTrpCysLeuProGlyGluIleLeuValGlnGluSerLeuGluIleGlyHisValV 1306753 : ATGGTGTTTGCCCGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGACACGTAG : 1306697 340 : laTyrLeuGlyValProTrpTyrGlnLeuProProAlaTyrArgArgGlnLeuMet : 357 .!||||||..!||||||||||||.!.||||||||| !|||!:!|||:!!||| alTyrLeuAsnValProTrpTyrAsnLeuProProIleTyrGlnArgLysLeuCys 1306696 : TCTACTTAAATGTACCATGGTACAATTTGCCGCCAATTTACCAGAGAAAACTTTGC : 1306643 358 : LeuIleIleLeuLysSerGlnAspGlyCysSerIleSerAlaLeuThrPheLysSe : 376 :!!!!:||||||!:!:!!|||.!. !|||||||||!!!||||||||||||::!!! MetMetIleLeuArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPheArgTh 1306642 : ATGATGATCCTTAGGGCACAACAATATTGCAGCATCACGGCATTAACGTTTCGAAC : 1306586 377 : rLeuGlyCysHisThrLeuThrSer >>>> Target Intron 4 >>>> Va : 385 !|||..! !||||||||||||||| 629 bp || rLeuSerIleHisThrLeuThrSer++ ++Va 1306585 : GTTGTCTATTCACACGTTAACGAGCgt.........................agGT : 1305930 386 : lPheAsnThrGlySerSerTyrPheAlaLeuLeuArgLysMetGln : 400 ||||||||||!.!:!!|||||||||.!!|||||||||:!!|||||| lPheAsnThrAlaAlaSerTyrPheThrLeuLeuArgGlnMetGln 1305929 : ATTCAATACAGCCGCTTCATATTTCACTTTGCTGCGACAAATGCAA : 1305883 vulgar: gi|383861644|ref|XP_003706295.1| 0 400 . KQ414608.1 1308263 1305882 - 983 M 73 219 S 0 1 5 0 2 I 0 78 3 0 2 S 1 2 M 87 261 G 0 3 M 2 6 G 0 3 M 10 30 S 0 2 5 0 2 I 0 300 3 0 2 S 1 1 M 65 195 G 3 0 M 21 63 S 0 2 5 0 2 I 0 165 3 0 2 S 1 1 M 120 360 5 0 2 I 0 625 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1305883 1308263 983 - . gene_id 1 ; sequence gi|383861644|ref|XP_003706295.1| ; gene_orientation + KQ414608.1 exonerate:protein2genome:local cds 1308044 1308263 . - . KQ414608.1 exonerate:protein2genome:local exon 1308044 1308263 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1308042 1308043 . - . intron_id 1 ; splice_site "GC" KQ414608.1 exonerate:protein2genome:local intron 1307962 1308043 . - . intron_id 1 KQ414608.1 exonerate:protein2genome:local splice3 1307962 1307963 . - . intron_id 0 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1307655 1307961 . - . KQ414608.1 exonerate:protein2genome:local exon 1307655 1307961 . - . insertions 6 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1307653 1307654 . - . intron_id 2 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1307351 1307654 . - . intron_id 2 KQ414608.1 exonerate:protein2genome:local splice3 1307351 1307352 . - . intron_id 1 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1307090 1307350 . - . KQ414608.1 exonerate:protein2genome:local exon 1307090 1307350 . - . insertions 0 ; deletions 3 KQ414608.1 exonerate:protein2genome:local splice5 1307088 1307089 . - . intron_id 3 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1306921 1307089 . - . intron_id 3 KQ414608.1 exonerate:protein2genome:local splice3 1306921 1306922 . - . intron_id 2 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1306560 1306920 . - . KQ414608.1 exonerate:protein2genome:local exon 1306560 1306920 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1306558 1306559 . - . intron_id 4 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1305931 1306559 . - . intron_id 4 KQ414608.1 exonerate:protein2genome:local splice3 1305931 1305932 . - . intron_id 3 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1305883 1305930 . - . KQ414608.1 exonerate:protein2genome:local exon 1305883 1305930 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1305883 1308263 983 - . alignment_id 1 ; Query gi|383861644|ref|XP_003706295.1| ; Align 1308264 1 219 ; Align 1307960 75 261 ; Align 1307696 162 6 ; Align 1307687 164 30 ; Align 1307350 175 195 ; Align 1307155 243 63 ; Align 1306920 265 360 ; Align 1305931 385 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383861640|ref|XP_003706293.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 992 Query range: 0 -> 403 Target range: 1308263 -> 1305879 1 : MetArgGlnProSerLysAspThrIleAspTyrTyrIleLeuProAsnLysIleLe : 19 |||!:!:!!||||||||| :!!|||||||||||||||||||||||||||||||| MetLysGluProSerLysThrSerIleAspTyrTyrIleLeuProAsnLysIleLe 1308263 : ATGAAAGAACCCTCTAAAACGTCGATCGACTATTATATACTACCGAATAAAATCCT : 1308209 20 : uCysSerLeuTyrGlyIleTrpProSerAspGluLysProSerThrIleArgThrV : 38 ||||.!!:!! !|||:!!||||||! !||||||||| !|||||| !! !! !: uCysGlyMetAlaGlyValTrpProIleAspGluLysSerSerThrArgThrLysL 1308208 : GTGCGGTATGGCCGGTGTCTGGCCTATCGACGAGAAAAGTTCAACGCGTACCAAAC : 1308152 39 : alMetSerValLeuHisIleLeuValSerIleValValValCysSerIleTyrVal : 56 !!.!.:!! !!!!!..:!::!! !!.!!:!!|||!.!:!! !|||!!:! ||| euPheAlaTyrPheArgLeuIlePheGlyLeuValAlaLeuAsnSerMetLeuVal 1308151 : TATTCGCATACTTTCGGCTGATATTCGGATTAGTGGCACTCAATAGCATGTTAGTG : 1308098 57 : ProGluIleIleMetLeuLeuAlaSerTrpAspAspLeuSerIleLeuAla{G} : 74 |||||||||!!:|||:!!:!!:!!!:!|||! !:!!|||!!!|||||||||{|} ProGluIleMetMetValIleSerAsnTrpGlyAsnLeuArgIleLeuAla{G}+- 1308097 : CCAGAAATTATGATGGTAATATCGAATTGGGGCAACTTAAGGATCCTAGCA{G}gc : 1308043 75 : >>>> Target Intron 1 >>>> {ly}AlaGlySerIleThrLeuThrIleT : 83 82 bp {||}!.!|||!!!:!! ! !|||:!! ++{ly}ValGlyCysValLeuThrThrLeuG 1308042 : .........................ag{GA}GTAGGATGCGTTTTAACAACACTCG : 1307935 84 : hrGlnPheLeuPheLysThrValTyrIleLeuAlaLysArgGluSerAlaTyrLys : 101 !|||! ||||||||||||:!!|||:!!:!! !!:!|||!!:!.!.!!|||!:! lyGlnSerLeuPheLysThrIleTyrLeuIleMetArgArgAspLysThrTyrArg 1307934 : GGCAATCGTTATTCAAAACGATTTACCTAATAATGAGAAGGGATAAAACCTACAGA : 1307881 102 : LeuLeuGluGluLeuLysSerLeuTrpTyrSerThrAspAsnProMetGluArgAr : 120 |||! ! ! |||:!!:::..!||||||:!!|||||||||:!!|||! ||||||!: LeuTyrTyrGluIleArgAspLeuTrpHisSerThrAspAspProLysGluArgGl 1307880 : CTTTACTACGAAATACGTGATCTGTGGCATTCTACCGACGATCCCAAAGAGAGACA : 1307824 121 : gSerTyrGluGluPheAlaTyrTrpGlyArgThrSerThrIleSerPhePheValS : 139 !!:!!:!|||.!..!!|||||||||!.!||||||! !|||||| !|||!:! !: nAsnPheGluAsnLeuAlaTyrTrpAlaArgThrIleThrIleValPheTyrSerA 1307823 : GAACTTCGAAAATCTCGCTTATTGGGCAAGAACAATTACAATAGTCTTTTACTCGG : 1307767 140 : erGlyIleLeuThrThrPheThrPheMetLeuSerAlaThrLeuAspSerMetLys : 157 !! !!!!:! !!.!..!|||||||||! !!!!:!!||||||! !|||! !.!.! ! laCysMetTrpAsnValPheThrPheThrPheAlaAlaThrHisAspTyrPheMet 1307766 : CCTGCATGTGGAACGTGTTCACATTCACGTTTGCTGCGACCCACGATTATTTCATG : 1307713 158 : GlnGlyTyr<->PheAspAsnGlyThrSerAsnArgHisLeuProTyrAspVal{T : 175 ! !||| .!!..!|||!.! !!.!!:!!:!|||||||||!:!!!:|||{| IleGluTyrAsnIleSerAsnAlaGluLysSerLysHisLeuProPheGluVal{T 1307712 : ATCGAATACAACATCAGCAACGCTGAAAAGAGCAAACACTTGCCCTTCGAAGTC{T : 1307656 176 : r} >>>> Target Intron 2 >>>> {p}HisGlyMetThrTyrLeuLysS : 183 |} 304 bp {|}:!!|||! ! ! ! !| r}++ ++{p}TyrGlyThrAspIleThrAlaS 1307655 : G}gt.........................ag{G}TATGGAACAGATATCACAGCAT : 1307328 184 : erProGluPheGluIleIleTyrValGlyGlnIleMetAlaSerPheAlaCysCys : 201 ||||| ||||||||| !!:!||| !!|||:!:!!:||| ! ! ..! erProLeuPheGluIleAlaPheValCysGlnLeuIleAlaValAlaPheValAla 1307327 : CTCCTCTCTTCGAAATCGCTTTCGTTTGTCAACTGATTGCGGTTGCATTTGTGGCC : 1307274 202 : CysAlaValCysGlyMetAspGlyMetLeuLeuThrThrIleLeuHisLeuSerGl : 220 ..!:!!..!! |||:!!|||||| ! !:!!|||||||||||||||:!!||||| AlaSerThrSerGlyLeuAspGlySerCysMetThrThrIleLeuHisValSerGl 1307273 : GCCTCAACCTCAGGCTTGGATGGATCATGTATGACCACGATTTTACACGTATCTGG : 1307217 221 : yGlnPheArgLeuIleThrThrTrpLeuThrAsnIleGlyIleGluMetAsnTyrT : 239 |||||||!:!||||||!:!||||||:!!!:!!!.!!:|||:!!|||! ||| !! yGlnPheLysLeuIleSerThrTrpValSerLysMetGlyValGluThrAsnValL 1307216 : ACAATTCAAATTAATCAGTACGTGGGTCAGCAAAATGGGAGTAGAAACAAATGTCA : 1307160 240 : hrThrIleAspLeuSerLysArgProValLysIleValAlaGlyLeuMetLysCys : 257 ! !!:!! ! !|||::! |||:!!! !!.!! !|||!!:|||||| ysProVal---TyrSerArg---------LysLeuGluValAspLeuIleLysCys 1307159 : AACCTGTT---TATTCGCGA---------AAATTAGAAGTGGACCTGATCAAATGC : 1307118 258 : IleArgHisHisGlnArgLeuIle{Ly} >>>> Target Intron 3 >>>> : 266 ||||||||||||||||||:!!|||{!!} 169 bp IleArgHisHisGlnArgMetIle{As}++ + 1307117 : ATTCGTCATCACCAACGAATGATA{AA}gt.........................a : 1306922 267 : {s}ThrValLysAspValAsnIlePheMetThrProIleValPheValHisLeuL : 284 {.}..!|||!!.||||||||| ......||||||||||||||||||!!.|||| +{n}ValValAsnAspValAsnAsnLeuPheThrProIleValPheValGlnLeuL 1306921 : g{C}GTGGTGAATGatgtgaataatttatttactccCATCGTTTTCGTACAACTTC : 1306868 285 : euThrSerGlyMetGlnIleCysLeuThrGlyPheAlaValLeuSerAsnAsnVal : 302 |||||||||||!!: !|||||||||!:!||||||||||||!!!..!|||:!!!.! euThrSerGlyIleValIleCysLeuSerGlyPheAlaValPheAspAsnAspAla 1306867 : TTACAAGCGGAATAGTAATTTGTTTAAGTGGATTCGCGGTTTTCGATAACGACGCC : 1306814 303 : GlyAlaAsnValPheLysPheIleSerTyrLeuGlyAlaValMetIleGlnLeuVa : 321 !!.!!:!!:!!.!.|||!:!:!!|||||||||..!:!!:!! !:!:||||||:! ArgThrAspIleLeuLysTyrValSerTyrLeuSerSerIleTrpLeuGlnLeuLe 1306813 : CGTACCGATATTCTGAAATACGTATCTTATTTGTCCTCGATTTGGTTGCAACTTTT : 1306757 322 : lMetLeuCysTrpProGlyGluIleLeuIleGlnGluSerGlnLysValAlaTyrA : 340 !:!:! !|||! !|||||||||||||||:!!||||||||| !:!!:!!!.!:!!! uLeuTrpCysLeuProGlyGluIleLeuValGlnGluSerLeuGluIleGlyHisV 1306756 : GTTATGGTGTTTGCCCGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGACACG : 1306700 341 : laAlaTyrLeuAsnValProTrpTyrGlnLeuProLeuCysTyrArgArgHisLeu : 358 .!!.!|||||||||||||||||||||.!.||||||! ! !|||!:!||| ! ||| alValTyrLeuAsnValProTrpTyrAsnLeuProProIleTyrGlnArgLysLeu 1306699 : TAGTCTACTTAAATGTACCATGGTACAATTTGCCGCCAATTTACCAGAGAAAACTT : 1306646 359 : LeuPheValIleMetLysAlaGlnGluSerCysCysIleLysAlaLeuThrPheGl : 377 ! !.!.:!!|||:!:!:!||||||:!!! !||| !!|||! !||||||||||||.. CysMetMetIleLeuArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPheAr 1306645 : TGCATGATGATCCTTAGGGCACAACAATATTGCAGCATCACGGCATTAACGTTTCG : 1306589 378 : uSerLeuSerSerHisThrLeuThrSer >>>> Target Intron 4 >>>> : 387 !!!!||||||! !||||||||||||||| 629 bp gThrLeuSerIleHisThrLeuThrSer++ + 1306588 : AACGTTGTCTATTCACACGTTAACGAGCgt.........................a : 1305932 388 : ValPheAsnThrAlaAlaSerTyrPheThrLeuLeuArgGlnMetGlnGlu : 403 ||||||||||||||||||||||||||||||||||||||||||||||||:!! +ValPheAsnThrAlaAlaSerTyrPheThrLeuLeuArgGlnMetGlnGln 1305931 : gGTATTCAATACAGCCGCTTCATATTTCACTTTGCTGCGACAAATGCAACAA : 1305880 vulgar: gi|383861640|ref|XP_003706293.1| 0 403 . KQ414608.1 1308263 1305879 - 992 M 73 219 S 0 1 5 0 2 I 0 78 3 0 2 S 1 2 M 86 258 G 0 3 M 14 42 S 0 2 5 0 2 I 0 300 3 0 2 S 1 1 M 66 198 G 1 0 M 3 9 G 3 0 M 17 51 S 0 2 5 0 2 I 0 165 3 0 2 S 1 1 M 120 360 5 0 2 I 0 625 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1305880 1308263 992 - . gene_id 1 ; sequence gi|383861640|ref|XP_003706293.1| ; gene_orientation + KQ414608.1 exonerate:protein2genome:local cds 1308044 1308263 . - . KQ414608.1 exonerate:protein2genome:local exon 1308044 1308263 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1308042 1308043 . - . intron_id 1 ; splice_site "GC" KQ414608.1 exonerate:protein2genome:local intron 1307962 1308043 . - . intron_id 1 KQ414608.1 exonerate:protein2genome:local splice3 1307962 1307963 . - . intron_id 0 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1307655 1307961 . - . KQ414608.1 exonerate:protein2genome:local exon 1307655 1307961 . - . insertions 3 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1307653 1307654 . - . intron_id 2 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1307351 1307654 . - . intron_id 2 KQ414608.1 exonerate:protein2genome:local splice3 1307351 1307352 . - . intron_id 1 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1307090 1307350 . - . KQ414608.1 exonerate:protein2genome:local exon 1307090 1307350 . - . insertions 0 ; deletions 4 KQ414608.1 exonerate:protein2genome:local splice5 1307088 1307089 . - . intron_id 3 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1306921 1307089 . - . intron_id 3 KQ414608.1 exonerate:protein2genome:local splice3 1306921 1306922 . - . intron_id 2 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1306560 1306920 . - . KQ414608.1 exonerate:protein2genome:local exon 1306560 1306920 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1306558 1306559 . - . intron_id 4 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1305931 1306559 . - . intron_id 4 KQ414608.1 exonerate:protein2genome:local splice3 1305931 1305932 . - . intron_id 3 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1305880 1305930 . - . KQ414608.1 exonerate:protein2genome:local exon 1305880 1305930 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1305880 1308263 992 - . alignment_id 1 ; Query gi|383861640|ref|XP_003706293.1| ; Align 1308264 1 219 ; Align 1307960 75 258 ; Align 1307699 161 42 ; Align 1307350 176 198 ; Align 1307152 243 9 ; Align 1307143 249 51 ; Align 1306920 267 360 ; Align 1305931 387 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383861642|ref|XP_003706294.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 972 Query range: 0 -> 419 Target range: 1308263 -> 1305876 1 : MetArgGlnProSerLysAspThrIleAspTyrTyrIlePheProAsnLysIleLe : 19 |||!:!:!!||||||||| :!!|||||||||||||||.!.|||||||||||||| MetLysGluProSerLysThrSerIleAspTyrTyrIleLeuProAsnLysIleLe 1308263 : ATGAAAGAACCCTCTAAAACGTCGATCGACTATTATATACTACCGAATAAAATCCT : 1308209 20 : uCysSerMetPheGlyMetTrpProSerAspLysLysArgSerThrValArgLysM : 38 ||||.!!||| !|||:!:||||||! !|||:!!|||!!!|||||| !! !|||: uCysGlyMetAlaGlyValTrpProIleAspGluLysSerSerThrArgThrLysL 1308208 : GTGCGGTATGGCCGGTGTCTGGCCTATCGACGAGAAAAGTTCAACGCGTACCAAAC : 1308152 39 : etLeuAlaTyrLeuHisPheValPheSerValLeuThrValCysValIleValVal : 56 !:!!!||||||!!!!...!.:!!|||.!!:!!:!!.!!:!! ! !!!::!!||| euPheAlaTyrPheArgLeuIlePheGlyLeuValAlaLeuAsnSerMetLeuVal 1308151 : TATTCGCATACTTTCGGCTGATATTCGGATTAGTGGCACTCAATAGCATGTTAGTG : 1308098 57 : ProGluIleIleLeuLeuAlaValArgTrpArgAspLeuLysIlePheAla{G} : 74 |||||||||!!::!!:!! ! !!.!||| !!:!!|||!:!|||.!.|||{|} ProGluIleMetMetValIleSerAsnTrpGlyAsnLeuArgIleLeuAla{G}+- 1308097 : CCAGAAATTATGATGGTAATATCGAATTGGGGCAACTTAAGGATCCTAGCA{G}gc : 1308043 75 : >>>> Target Intron 1 >>>> {ly}AlaGlyCysIleIleMetSerLeuM : 83 82 bp {||}!.!||||||:!!:!!! !!!||| ++{ly}ValGlyCysValLeuThrThrLeuG 1308042 : .........................ag{GA}GTAGGATGCGTTTTAACAACACTCG : 1307935 84 : etGlnValLeuPheLysThrValTyrLeuThrMetLysArgGluGluAlaHisLys : 101 !||| !||||||||||||:!!||||||! !|||!:!|||!!::!!.!!:!!!:! lyGlnSerLeuPheLysThrIleTyrLeuIleMetArgArgAspLysThrTyrArg 1307934 : GGCAATCGTTATTCAAAACGATTTACCTAATAATGAGAAGGGATAAAACCTACAGA : 1307881 102 : LeuTyrThrGluPheArgSerLeuTrpTyrLeuThrLysAspProValGluArgGl : 120 |||||| !|||.!.|||..!||||||:!!! !||| ! |||||| !|||||||| LeuTyrTyrGluIleArgAspLeuTrpHisSerThrAspAspProLysGluArgGl 1307880 : CTTTACTACGAAATACGTGATCTGTGGCATTCTACCGACGATCCCAAAGAGAGACA : 1307824 121 : nSerTyrGluLeuPheAlaTyrTrpAlaArgThrCysThrIleThrPheGlyValS : 139 |!:!!:!||| !.!!|||||||||||||||||| !||||||..!||| ! !: nAsnPheGluAsnLeuAlaTyrTrpAlaArgThrIleThrIleValPheTyrSerA 1307823 : GAACTTCGAAAATCTCGCTTATTGGGCAAGAACAATTACAATAGTCTTTTACTCGG : 1307767 140 : erCysValGlyThrMetIleIlePhePheIleSerAlaThrTyrAspTyrIleThr : 157 !!|||:!! !!!.!:!!.!!! !||| .!!:!!||||||:!!||||||.!!! ! laCysMetTrpAsnValPheThrPheThrPheAlaAlaThrHisAspTyrPheMet 1307766 : CCTGCATGTGGAACGTGTTCACATTCACGTTTGCTGCGACCCACGATTATTTCATG : 1307713 158 : <-><-><->AspValAsnMetAsnAlaGlySerArgHisLeuProTyrAspValCy : 173 :!!:!!!:!! !! ! !|||!:!|||||||||!:!!!:|||!! IleGluTyrAsnIleSerAsnAlaGluLysSerLysHisLeuProPheGluValTr 1307712 : ATCGAATACAACATCAGCAACGCTGAAAAGAGCAAACACTTGCCCTTCGAAGTCTG : 1307656 174 : sCysMetIleAsnValGlnLeuGluValSerGlnThrTyrGlnMetGluMetArgG : 192 ! ! :!:::! !... ! !:!!||| ! ! ..!!!:! !. p***AsnLeuSerSerSerThr***LeuSerCysCysIleGlyArgArgIleLeuS 1307655 : GTAAAACTTGTCCTCTTCCACTTGATTATCTTGCTGTATTGGTCGTCGAATACTTT : 1307599 193 : lyIleAspPheIleAspSerProGluPheGluIleIlePheValSerGlnIle > : 210 .!:!!|||! ! ! !||| !:!! ! !!:!!||| ..!||| ||| erValAspSer***LeuSerSerGlnThr***LeuIleLysThrSerThrIle+- 1307598 : CAGTAGATTCCTAACTTTCAAGTCAGACCTAGCTAATCAAAACTAGTACTATCga. : 1307543 211 : >>> Target Intron 2 >>>> LeuAlaSerLeuPheAlaAlaCysAlaVal : 219 253 bp :!!||| ! !|||!.!|||..!:!!..! -+IleAlaValAlaPheValAlaAlaSerThr 1307542 : ........................tgATTGCGGTTGCATTTGTGGCCGCCTCAACC : 1307265 220 : IleGlyLeuAspSerThrCysValThrIleIleLeuHisLeuSerGlyGlnPheAr : 238 !|||||||||.!!:!!|||:!!|||! |||||||||:!!||||||||||||!: SerGlyLeuAspGlySerCysMetThrThrIleLeuHisValSerGlyGlnPheLy 1307264 : TCAGGCTTGGATGGATCATGTATGACCACGATTTTACACGTATCTGGACAATTCAA : 1307208 239 : gLeuIleThrThrTrpLeuSerAsnIleGlyIleGluMetGlnTyrAsnArgIleA : 257 !||||||!:!||||||:!!|||!!.!!:|||:!!|||! .!. !!!.! !:!! sLeuIleSerThrTrpValSerLysMetGlyValGluThrAsnValLysProVal- 1307207 : ATTAATCAGTACGTGGGTCAGCAAAATGGGAGTAGAAACAAATGTCAAACCTGTT- : 1307151 258 : spLeuHisAsnCysProProSerValSerAlaAspLeuIleLysCysIleArgHis : 275 ! ! !!! !!.!:!!..!!.!|||||||||||||||||||||||| -----------TyrSerArgLysLeuGluValAspLeuIleLysCysIleArgHis 1307150 : -----------TATTCGCGAAAATTAGAAGTGGACCTGATCAAATGCATTCGTCAT : 1307109 276 : HisGlnArgLeuIle{Ly} >>>> Target Intron 3 >>>> {s}ValLe : 283 |||||||||:!!|||{!!} 169 bp {.}|||:! HisGlnArgMetIle{As}++ ++{n}ValVa 1307108 : CACCAACGAATGATA{AA}gt.........................ag{C}GTGGT : 1306916 284 : uGlnAspValAsnSerLeuLeuThrProIleIlePheMetGlnValPheThrSerS : 302 !.!.|||||||||:::|||...|||||||||:!!|||:!:|||:!!.!!||||||. lAsnAspValAsnAsnLeuPheThrProIleValPheValGlnLeuLeuThrSerG 1306915 : GAATGatgtgaataatttatttactccCATCGTTTTCGTACAACTTCTTACAAGCG : 1306859 303 : erIleValPheCysLeuGlyGlyTyrAlaIleIleSerAsnAsnAlaAlaAspAsp : 320 !!||||||.!!||||||.!!|||!:!|||:!!.!!..!|||:!!||| ! !||| lyIleValIleCysLeuSerGlyPheAlaValPheAspAsnAspAlaArgThrAsp 1306858 : GAATAGTAATTTGTTTAAGTGGATTCGCGGTTTTCGATAACGACGCCCGTACCGAT : 1306805 321 : LeuPheLysPheValSerTyrIleLeuSerMetThrIleGlnLeuLeuLeuTrpCy : 339 :!!.!.|||!:!|||||||||:!:! !|||!!: !:!:||||||||||||||||| IleLeuLysTyrValSerTyrLeuSerSerIleTrpLeuGlnLeuLeuLeuTrpCy 1306804 : ATTCTGAAATACGTATCTTATTTGTCCTCGATTTGGTTGCAACTTTTGTTATGGTG : 1306748 340 : sTrpProGlyGluIleLeuIleGluGluSerLeuHisIleGlyTyrAlaAlaTyrV : 358 |! !|||||||||||||||:!!:!!|||||||||.!.||||||:!!!.!!.!|||: sLeuProGlyGluIleLeuValGlnGluSerLeuGluIleGlyHisValValTyrL 1306747 : TTTGCCCGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGACACGTAGTCTACT : 1306691 359 : alAsnValProTrpTyrAsnLeuProProPheTyrArgArgGlnLeuCysLeuIle : 376 !!|||||||||||||||||||||||||||.!!|||!:!|||:!!||||||:!!!!: euAsnValProTrpTyrAsnLeuProProIleTyrGlnArgLysLeuCysMetMet 1306690 : TAAATGTACCATGGTACAATTTGCCGCCAATTTACCAGAGAAAACTTTGCATGATG : 1306637 377 : ValLeuArgSerGlnLysThrCysSerLeuSerAlaPheIlePheHisSerLeuSe : 395 :!!||||||:!!|||:!! !||||||:!!!!!|||!!.! |||!..!!!||||| IleLeuArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPheArgThrLeuSe 1306636 : ATCCTTAGGGCACAACAATATTGCAGCATCACGGCATTAACGTTTCGAACGTTGTC : 1306580 396 : rIleTyrThrLeuThrAsn >>>> Target Intron 4 >>>> ValLeuAs : 404 ||||:!!|||||||||!:! 629 bp |||!!!|| rIleHisThrLeuThrSer++ ++ValPheAs 1306579 : TATTCACACGTTAACGAGCgt.........................agGTATTCAA : 1305924 405 : nThrAlaPheSerTyrPheAlaLeuLeuArgGlnIleGlnAspLys : 419 ||||||| !|||||||||.!!||||||||||||!!:|||.!.||| nThrAlaAlaSerTyrPheThrLeuLeuArgGlnMetGlnGlnLys 1305923 : TACAGCCGCTTCATATTTCACTTTGCTGCGACAAATGCAACAAAAG : 1305877 vulgar: gi|383861642|ref|XP_003706294.1| 0 419 . KQ414608.1 1308263 1305876 - 972 M 73 219 S 0 1 5 0 2 I 0 78 3 0 2 S 1 2 M 83 249 G 0 9 M 52 156 5 0 2 I 0 249 3 0 2 M 47 141 G 4 0 M 20 60 S 0 2 5 0 2 I 0 165 3 0 2 S 1 1 M 120 360 5 0 2 I 0 625 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1305877 1308263 972 - . gene_id 1 ; sequence gi|383861642|ref|XP_003706294.1| ; gene_orientation + KQ414608.1 exonerate:protein2genome:local cds 1308044 1308263 . - . KQ414608.1 exonerate:protein2genome:local exon 1308044 1308263 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1308042 1308043 . - . intron_id 1 ; splice_site "GC" KQ414608.1 exonerate:protein2genome:local intron 1307962 1308043 . - . intron_id 1 KQ414608.1 exonerate:protein2genome:local splice3 1307962 1307963 . - . intron_id 0 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1307546 1307961 . - . KQ414608.1 exonerate:protein2genome:local exon 1307546 1307961 . - . insertions 9 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1307544 1307545 . - . intron_id 2 ; splice_site "GA" KQ414608.1 exonerate:protein2genome:local intron 1307293 1307545 . - . intron_id 2 KQ414608.1 exonerate:protein2genome:local splice3 1307293 1307294 . - . intron_id 1 ; splice_site "TG" KQ414608.1 exonerate:protein2genome:local cds 1307090 1307292 . - . KQ414608.1 exonerate:protein2genome:local exon 1307090 1307292 . - . insertions 0 ; deletions 4 KQ414608.1 exonerate:protein2genome:local splice5 1307088 1307089 . - . intron_id 3 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1306921 1307089 . - . intron_id 3 KQ414608.1 exonerate:protein2genome:local splice3 1306921 1306922 . - . intron_id 2 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1306560 1306920 . - . KQ414608.1 exonerate:protein2genome:local exon 1306560 1306920 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1306558 1306559 . - . intron_id 4 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1305931 1306559 . - . intron_id 4 KQ414608.1 exonerate:protein2genome:local splice3 1305931 1305932 . - . intron_id 3 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1305877 1305930 . - . KQ414608.1 exonerate:protein2genome:local exon 1305877 1305930 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1305877 1308263 972 - . alignment_id 1 ; Query gi|383861642|ref|XP_003706294.1| ; Align 1308264 1 219 ; Align 1307960 75 249 ; Align 1307702 158 156 ; Align 1307293 210 141 ; Align 1307152 261 60 ; Align 1306920 282 360 ; Align 1305931 402 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383861632|ref|XP_003706289.1| PREDICTED: putative odorant receptor 85e [Megachile rotundata] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1095 Query range: 0 -> 396 Target range: 1308263 -> 1305876 1 : MetGlyLysValAlaLysAspSerIleAspTyrTyrValLeuProAsnLysIleMe : 19 ||| !:!! !:!!||| |||||||||||||||:!!|||||||||||||||:! MetLysGluProSerLysThrSerIleAspTyrTyrIleLeuProAsnLysIleLe 1308263 : ATGAAAGAACCCTCTAAAACGTCGATCGACTATTATATACTACCGAATAAAATCCT : 1308209 20 : tCysSerAlaIleGlyIleTrpProProAspGluGluGlnSerPheGlyGlyArgL : 38 !|||.!! ! !|||:!!|||||| !||||||:!!...||| !! !!:!| uCysGlyMetAlaGlyValTrpProIleAspGluLysSerSerThrArgThrLysL 1308208 : GTGCGGTATGGCCGGTGTCTGGCCTATCGACGAGAAAAGTTCAACGCGTACCAAAC : 1308152 39 : euPheValGlyPheArgValValPheSerIleAlaAlaValCysThrIlePheVal : 56 |||||!.! !||||||:!!:!!|||.!!:!!!.!|||:!! !!:!!!:!!.||| euPheAlaTyrPheArgLeuIlePheGlyLeuValAlaLeuAsnSerMetLeuVal 1308151 : TATTCGCATACTTTCGGCTGATATTCGGATTAGTGGCACTCAATAGCATGTTAGTG : 1308098 57 : ProGluIleMetMetIleAlaValAsnTrpGlyAspLeuArgIleLeuThr{G} : 74 |||||||||||||||:!! ! !|||||||||:!!||||||||||||.!!{|} ProGluIleMetMetValIleSerAsnTrpGlyAsnLeuArgIleLeuAla{G}+- 1308097 : CCAGAAATTATGATGGTAATATCGAATTGGGGCAACTTAAGGATCCTAGCA{G}gc : 1308043 75 : >>>> Target Intron 1 >>>> {ly}ValGlyCysValLeuThrThrValA : 83 82 bp {||}|||||||||||||||||||||:!!! ++{ly}ValGlyCysValLeuThrThrLeuG 1308042 : .........................ag{GA}GTAGGATGCGTTTTAACAACACTCG : 1307935 84 : laGlnLeuIlePheLysMetIleTyrLeuIleAlaArgLysGluArgSerTyrLys : 101 .!|||! !:!!||||||! !|||||||||||| !|||!:!!!:!:!!!!|||!:! lyGlnSerLeuPheLysThrIleTyrLeuIleMetArgArgAspLysThrTyrArg 1307934 : GGCAATCGTTATTCAAAACGATTTACCTAATAATGAGAAGGGATAAAACCTACAGA : 1307881 102 : LeuTyrLysGluLeuArgSerLeuTrpAspSerSerHisAspSerLysGluArgGl : 120 |||||| ! |||:!!|||..!|||||| !!|||!!! !!||| !!||||||||||| LeuTyrTyrGluIleArgAspLeuTrpHisSerThrAspAspProLysGluArgGl 1307880 : CTTTACTACGAAATACGTGATCTGTGGCATTCTACCGACGATCCCAAAGAGAGACA : 1307824 121 : nCysTyrGlnGlyLeuAlaTyrIleAlaArgAsnCysThrIleIleTyrHisThrS : 139 | !!:!:!!..!||||||||| ||||||!.. !||||||:!!!:!:!!:!!: nAsnPheGluAsnLeuAlaTyrTrpAlaArgThrIleThrIleValPheTyrSerA 1307823 : GAACTTCGAAAATCTCGCTTATTGGGCAAGAACAATTACAATAGTCTTTTACTCGG : 1307767 140 : erGlyLeuLeuThrValAlaValPheThrValSerAlaValPheAspTyr<-><-> : 156 !! !!:!!! !!.!||| !..!|||||| !!:!!|||..! !|||||| laCysMetTrpAsnValPheThrPheThrPheAlaAlaThrHisAspTyrPheMet 1307766 : CCTGCATGTGGAACGTGTTCACATTCACGTTTGCTGCGACCCACGATTATTTCATG : 1307713 157 : ValLysPheGlyGlnAspAsnAsnAlaAlaAsnArgHisLeuProTyrAspVal{T : 174 :!!:!!!:!..! ..!||| !! ! !!:!!:!|||||||||!:!!!:|||{| IleGluTyrAsnIleSerAsnAlaGluLysSerLysHisLeuProPheGluVal{T 1307712 : ATCGAATACAACATCAGCAACGCTGAAAAGAGCAAACACTTGCCCTTCGAAGTC{T : 1307656 175 : r} >>>> Target Intron 2 >>>> {p}TyrGlyThrAspValThrAspS : 182 |} 304 bp {|}||||||||||||:!!|||! | r}++ ++{p}TyrGlyThrAspIleThrAlaS 1307655 : G}gt.........................ag{G}TATGGAACAGATATCACAGCAT : 1307328 183 : erProGlyPheGluIleAlaPheAlaCysGlnValLeuAlaAlaSerIleCysThr : 200 ||||| !|||||||||||||||!.!||||||:!!:!!|||!.!:!!.!! .!! erProLeuPheGluIleAlaPheValCysGlnLeuIleAlaValAlaPheValAla 1307327 : CTCCTCTCTTCGAAATCGCTTTCGTTTGTCAACTGATTGCGGTTGCATTTGTGGCC : 1307274 201 : IleGlyValThrGlyLeuAspThrThrCysAlaThrSerIleLeuHisIleCysGl : 219 !..!..!:!!||||||||| !:!!||| !|||!!!|||||||||:!!! !|| AlaSerThrSerGlyLeuAspGlySerCysMetThrThrIleLeuHisValSerGl 1307273 : GCCTCAACCTCAGGCTTGGATGGATCATGTATGACCACGATTTTACACGTATCTGG : 1307217 220 : yGlnPheArgLeuMetCysMetTrpIleSerAsnIleGlyIleLysIleAsnCysA : 238 |||||||!:!|||!!: !!! !|||:!!|||!!.!!:|||:!!:!!! !||| ! yGlnPheLysLeuIleSerThrTrpValSerLysMetGlyValGluThrAsnValL 1307216 : ACAATTCAAATTAATCAGTACGTGGGTCAGCAAAATGGGAGTAGAAACAAATGTCA : 1307160 239 : spSer<-><->ProArgThrValThrThrAspLeuIleArgCysIleArgHisGln : 254 ! !! !!|||! !:!! !..!|||||||||!:!||||||||||||!!. ysProValTyrSerArgLysLeuGluValAspLeuIleLysCysIleArgHisHis 1307159 : AACCTGTTTATTCGCGAAAATTAGAAGTGGACCTGATCAAATGCATTCGTCATCAC : 1307106 255 : GlnArgLeuIle{Se} >>>> Target Intron 3 >>>> {r}AlaValLy : 262 ||||||:!!|||{!:} 169 bp {!}!.!|||!! GlnArgMetIle{As}++ ++{n}ValValAs 1307105 : CAACGAATGATA{AA}gt.........................ag{C}GTGGTGAA : 1306913 263 : sAspValAsnAsnLeuLeuThrProIleIlePheValGlnValLeuThrSerGlyI : 281 .|||||||||||||||...|||||||||:!!|||||||||:!!||||||||||||| nAspValAsnAsnLeuPheThrProIleValPheValGlnLeuLeuThrSerGlyI 1306912 : TGatgtgaataatttatttactccCATCGTTTTCGTACAACTTCTTACAAGCGGAA : 1306856 282 : leValIleCysLeuCysGlyPheAlaValLeu<->ArgGlyThrGlyAspAspLeu : 298 |||||||||||||| !!||||||||||||!!! !.!! !.!! !! !|||:!! leValIleCysLeuSerGlyPheAlaValPheAspAsnAspAlaArgThrAspIle 1306855 : TAGTAATTTGTTTAAGTGGATTCGCGGTTTTCGATAACGACGCCCGTACCGATATT : 1306802 299 : PheLysPheIleValTyrLeuThrAlaValMetIleGlnLeuMetPheTrpCysTr : 317 .!.|||!:!:!! !||||||:!!:!!:!! !:!:||||||:!!!!.||||||! LeuLysTyrValSerTyrLeuSerSerIleTrpLeuGlnLeuLeuLeuTrpCysLe 1306801 : CTGAAATACGTATCTTATTTGTCCTCGATTTGGTTGCAACTTTTGTTATGGTGTTT : 1306745 318 : pProGlyGluIleLeuIleGlnGluSerLeuGluValGlyTyrAlaValTyrLeuA : 336 !|||||||||||||||:!!|||||||||||||||:!!|||:!!!.!|||||||||| uProGlyGluIleLeuValGlnGluSerLeuGluIleGlyHisValValTyrLeuA 1306744 : GCCCGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGACACGTAGTCTACTTAA : 1306688 337 : snIleProTrpTyrAsnMetGluProAlaCysArgArgGlnLeuLeuLeuValIle : 354 ||:!!||||||||||||:!! !||| !! !!:!|||:!!|||! !:!!:!!||| snValProTrpTyrAsnLeuProProIleTyrGlnArgLysLeuCysMetMetIle 1306687 : ATGTACCATGGTACAATTTGCCGCCAATTTACCAGAGAAAACTTTGCATGATGATC : 1306634 355 : LeuArgSerGlnAsnValCysSerIleSerAlaLeuThrPheArgThrValCysIl : 373 ||||||:!!|||.!. !|||||||||!!!||||||||||||||||||:!!! !|| LeuArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPheArgThrLeuSerIl 1306633 : CTTAGGGCACAACAATATTGCAGCATCACGGCATTAACGTTTCGAACGTTGTCTAT : 1306577 374 : eHisSerLeuThrThr >>>> Target Intron 4 >>>> ValPheAsnAl : 382 ||||!!!||||||!:! 629 bp |||||||||.! eHisThrLeuThrSer++ ++ValPheAsnTh 1306576 : TCACACGTTAACGAGCgt.........................agGTATTCAATAC : 1305921 383 : aAlaAlaSerTyrPheThrLeuLeuArgGlnMetGluGluLys : 396 !|||||||||||||||||||||||||||||||||:!!:!!||| rAlaAlaSerTyrPheThrLeuLeuArgGlnMetGlnGlnLys 1305920 : AGCCGCTTCATATTTCACTTTGCTGCGACAAATGCAACAAAAG : 1305877 vulgar: gi|383861632|ref|XP_003706289.1| 0 396 . KQ414608.1 1308263 1305876 - 1095 M 73 219 S 0 1 5 0 2 I 0 78 3 0 2 S 1 2 M 81 243 G 0 6 M 18 54 S 0 2 5 0 2 I 0 300 3 0 2 S 1 1 M 65 195 G 0 6 M 19 57 S 0 2 5 0 2 I 0 165 3 0 2 S 1 1 M 32 96 G 0 3 M 87 261 5 0 2 I 0 625 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1305877 1308263 1095 - . gene_id 1 ; sequence gi|383861632|ref|XP_003706289.1| ; gene_orientation + KQ414608.1 exonerate:protein2genome:local cds 1308044 1308263 . - . KQ414608.1 exonerate:protein2genome:local exon 1308044 1308263 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1308042 1308043 . - . intron_id 1 ; splice_site "GC" KQ414608.1 exonerate:protein2genome:local intron 1307962 1308043 . - . intron_id 1 KQ414608.1 exonerate:protein2genome:local splice3 1307962 1307963 . - . intron_id 0 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1307655 1307961 . - . KQ414608.1 exonerate:protein2genome:local exon 1307655 1307961 . - . insertions 6 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1307653 1307654 . - . intron_id 2 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1307351 1307654 . - . intron_id 2 KQ414608.1 exonerate:protein2genome:local splice3 1307351 1307352 . - . intron_id 1 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1307090 1307350 . - . KQ414608.1 exonerate:protein2genome:local exon 1307090 1307350 . - . insertions 6 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1307088 1307089 . - . intron_id 3 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1306921 1307089 . - . intron_id 3 KQ414608.1 exonerate:protein2genome:local splice3 1306921 1306922 . - . intron_id 2 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1306560 1306920 . - . KQ414608.1 exonerate:protein2genome:local exon 1306560 1306920 . - . insertions 3 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1306558 1306559 . - . intron_id 4 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1305931 1306559 . - . intron_id 4 KQ414608.1 exonerate:protein2genome:local splice3 1305931 1305932 . - . intron_id 3 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1305877 1305930 . - . KQ414608.1 exonerate:protein2genome:local exon 1305877 1305930 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1305877 1308263 1095 - . alignment_id 1 ; Query gi|383861632|ref|XP_003706289.1| ; Align 1308264 1 219 ; Align 1307960 75 243 ; Align 1307711 156 54 ; Align 1307350 175 195 ; Align 1307149 240 57 ; Align 1306920 260 96 ; Align 1306821 292 261 ; Align 1305931 379 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383861634|ref|XP_003706290.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1116 Query range: 0 -> 407 Target range: 1308263 -> 1305870 1 : MetGlyLysValSerLysAsnSerIleAspTyrTyrIleLeuProAsnLysIleLe : 19 ||| !:!! !||||||!..||||||||||||||||||||||||||||||||||| MetLysGluProSerLysThrSerIleAspTyrTyrIleLeuProAsnLysIleLe 1308263 : ATGAAAGAACCCTCTAAAACGTCGATCGACTATTATATACTACCGAATAAAATCCT : 1308209 20 : uCysSerMetIleGlyMetTrpProPheSerGluGluArgSerThrCysArgAsnA : 38 ||||.!!||| !|||:!:||||||.!!..!|||:!!!!!|||||| !!! !!!. uCysGlyMetAlaGlyValTrpProIleAspGluLysSerSerThrArgThrLysL 1308208 : GTGCGGTATGGCCGGTGTCTGGCCTATCGACGAGAAAAGTTCAACGCGTACCAAAC : 1308152 39 : laPheSerCysPheArgLeuValPheSerValThrAlaValCysThrIlePheVal : 56 !|||:!!! !|||||||||:!!|||.!!:!!..!|||:!! !!:!!!:!!.||| euPheAlaTyrPheArgLeuIlePheGlyLeuValAlaLeuAsnSerMetLeuVal 1308151 : TATTCGCATACTTTCGGCTGATATTCGGATTAGTGGCACTCAATAGCATGTTAGTG : 1308098 57 : ProGlyIleMetIleIleValValLysTrpGlyAspLeuLysIleLeuThr{G} : 74 |||! !||||||!!::!!:!! !!!.||||||:!!|||!:!||||||.!!{|} ProGluIleMetMetValIleSerAsnTrpGlyAsnLeuArgIleLeuAla{G}+- 1308097 : CCAGAAATTATGATGGTAATATCGAATTGGGGCAACTTAAGGATCCTAGCA{G}gc : 1308043 75 : >>>> Target Intron 1 >>>> {ly}ValGlyCysIleLeuThrThrLeuA : 83 82 bp {||}|||||||||:!!||||||||||||! ++{ly}ValGlyCysValLeuThrThrLeuG 1308042 : .........................ag{GA}GTAGGATGCGTTTTAACAACACTCG : 1307935 84 : laGlnCysLeuPheLysThrIleTyrLeuValAlaArgLysGluArgSerHisArg : 101 .!|||! |||||||||||||||||||||:!! !|||!:!!!:!:!!!!:!!||| lyGlnSerLeuPheLysThrIleTyrLeuIleMetArgArgAspLysThrTyrArg 1307934 : GGCAATCGTTATTCAAAACGATTTACCTAATAATGAGAAGGGATAAAACCTACAGA : 1307881 102 : LeuTyrLysGluLeuArgSerLeuTrpAspSerThrAspAspProThrGluMetGl : 120 |||||| ! |||:!!|||..!|||||| !!|||||||||||||||! !|||! || LeuTyrTyrGluIleArgAspLeuTrpHisSerThrAspAspProLysGluArgGl 1307880 : CTTTACTACGAAATACGTGATCTGTGGCATTCTACCGACGATCCCAAAGAGAGACA : 1307824 121 : nCysTyrGlnAspLeuAlaHisValAlaArgThrCysThrIleThrPheTyrSerC : 139 | !!:!:!!:!!||||||:!! !||||||||| !||||||..!|||||||||. nAsnPheGluAsnLeuAlaTyrTrpAlaArgThrIleThrIleValPheTyrSerA 1307823 : GAACTTCGAAAATCTCGCTTATTGGGCAAGAACAATTACAATAGTCTTTTACTCGG : 1307767 140 : ysGlyAlaLeuThrSerIleValPheIleIleSerAlaAlaLeuGluCysMetAsn : 157 .! !! !! !!.! !.!!..!|||! .!!:!!|||.!!! !!!:! !.!.! laCysMetTrpAsnValPheThrPheThrPheAlaAlaThrHisAspTyrPheMet 1307766 : CCTGCATGTGGAACGTGTTCACATTCACGTTTGCTGCGACCCACGATTATTTCATG : 1307713 158 : ValAspValSer<->AsnGlyThrAspSerIleArgProLeuProPheGluVal{T : 175 :!!!!: !!:! !:!..!.!!!!:!.!! !!:!! !|||||||||||||||{| IleGluTyrAsnIleSerAsnAlaGluLysSerLysHisLeuProPheGluVal{T 1307712 : ATCGAATACAACATCAGCAACGCTGAAAAGAGCAAACACTTGCCCTTCGAAGTC{T : 1307656 176 : r} >>>> Target Intron 2 >>>> {p}TyrGlyIleAspValSerGluS : 183 |} 304 bp {|}||||||! !|||:!!!!!! !| r}++ ++{p}TyrGlyThrAspIleThrAlaS 1307655 : G}gt.........................ag{G}TATGGAACAGATATCACAGCAT : 1307328 184 : erProArgPheGluValValPheValCysGlnAlaLeuAlaSerThrIleCysAla : 201 |||||! !||||||:!!!.!|||||||||||| !:!!||| !.!!.!! ||| erProLeuPheGluIleAlaPheValCysGlnLeuIleAlaValAlaPheValAla 1307327 : CTCCTCTCTTCGAAATCGCTTTCGTTTGTCAACTGATTGCGGTTGCATTTGTGGCC : 1307274 202 : ValAlaIleCysSerLeuAspThrAlaCysValThrAlaIleLeuHisValCysGl : 220 !.!:!!! !! .!!|||||| !:!!|||:!!|||.!!||||||||||||! !|| AlaSerThrSerGlyLeuAspGlySerCysMetThrThrIleLeuHisValSerGl 1307273 : GCCTCAACCTCAGGCTTGGATGGATCATGTATGACCACGATTTTACACGTATCTGG : 1307217 221 : yGlnPheLysLeuIleSerValTrpIleSerHisIleGlyPheGluThrAspCysA : 239 |||||||||||||||||||..!|||:!!||| ! !!:||| ! ||| yGlnPheLysLeuIleSerThrTrpValSerLysMetGlyValGlu---------- 1307216 : ACAATTCAAATTAATCAGTACGTGGGTCAGCAAAATGGGAGTAGAA---------- : 1307169 240 : snLeuThrAsnTyrLeuValAspSerArgArgAsnLeuArgThrAspLeuValLys : 257 |||||| ! ! !! !! ! !|||!!.|||..!..!||||||:!!||| -----ThrAsnValLysProValTyrSerArgLysLeuGluValAspLeuIleLys 1307168 : -----ACAAATGTCAAACCTGTTTATTCGCGAAAATTAGAAGTGGACCTGATCAAA : 1307121 258 : CysIleArgHisGlnGlnArgLeuIle{As} >>>> Target Intron 3 >> : 267 ||||||||||||!!.||||||:!!|||{||} 169 bp CysIleArgHisHisGlnArgMetIle{As}++ 1307120 : TGCATTCGTCATCACCAACGAATGATA{AA}gt....................... : 1307087 268 : >> {n}ValValLysAspValAsnThrLeuMetThrProIleIlePheIleGlnI : 284 {|}||||||!!.|||||||||...|||...|||||||||:!!|||:!!|||: ++{n}ValValAsnAspValAsnAsnLeuPheThrProIleValPheValGlnL 1307086 : ..ag{C}GTGGTGAATGatgtgaataatttatttactccCATCGTTTTCGTACAAC : 1306871 285 : leLeuThrSerGlyIleGluIleCysLeuSerGlyPheAlaValPheSerTyrAsp : 302 !!|||||||||||||||! !|||||||||||||||||||||||||||..! !!||| euLeuThrSerGlyIleValIleCysLeuSerGlyPheAlaValPheAspAsnAsp 1306870 : TTCTTACAAGCGGAATAGTAATTTGTTTAAGTGGATTCGCGGTTTTCGATAACGAC : 1306817 303 : AlaGlyGlyAspLeuPheLysPheIleSerTyrLeuAlaSerMetMetValGlnLe : 321 ||| !! !|||:!!.!.|||!:!:!!|||||||||:!!|||!!: !:!!||||| AlaArgThrAspIleLeuLysTyrValSerTyrLeuSerSerIleTrpLeuGlnLe 1306816 : GCCCGTACCGATATTCTGAAATACGTATCTTATTTGTCCTCGATTTGGTTGCAACT : 1306760 322 : uLeuLeuTrpCysTrpProGlyGluIleLeuAlaGlnGluSerGlnLysIleGlyH : 340 |||||||||||||! !|||||||||||||||!.!||||||||| !:!!||||||| uLeuLeuTrpCysLeuProGlyGluIleLeuValGlnGluSerLeuGluIleGlyH 1306759 : TTTGTTATGGTGTTTGCCCGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGAC : 1306703 341 : isSerValTyrLeuAsnIleProTrpTyrGlnLeuProLeuIleTyrArgLysLys : 358 || !||||||||||||:!!|||||||||.!.||||||! !||||||!:!!:!||| isValValTyrLeuAsnValProTrpTyrAsnLeuProProIleTyrGlnArgLys 1306702 : ACGTAGTCTACTTAAATGTACCATGGTACAATTTGCCGCCAATTTACCAGAGAAAA : 1306649 359 : IleLeuLeuMetIleLeuArgSerGlnLysTyrCysSerIleSerAlaLeuThrPh : 377 :!!! !:!!||||||||||||:!!|||:!!||||||||||||!!!||||||||||| LeuCysMetMetIleLeuArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPh 1306648 : CTTTGCATGATGATCCTTAGGGCACAACAATATTGCAGCATCACGGCATTAACGTT : 1306592 378 : eGlnSerLeuSerIleTyrThrLeuThrSer >>>> Target Intron 4 >> : 388 |!:!!!!|||||||||:!!|||||||||||| 629 bp eArgThrLeuSerIleHisThrLeuThrSer++ 1306591 : TCGAACGTTGTCTATTCACACGTTAACGAGCgt....................... : 1306557 389 : >> ValPheAsnThrAlaSerSerTyrPheAlaLeuLeuArgGlnIleGlnAspG : 405 |||||||||||||||:!!|||||||||.!!||||||||||||!!:|||.!.: ++ValPheAsnThrAlaAlaSerTyrPheThrLeuLeuArgGlnMetGlnGlnL 1306556 : ..agGTATTCAATACAGCCGCTTCATATTTCACTTTGCTGCGACAAATGCAACAAA : 1305879 406 : lnSerThr : 407 !!! !||| ys***Thr 1305878 : AGTAAACT : 1305871 vulgar: gi|383861634|ref|XP_003706290.1| 0 407 . KQ414608.1 1308263 1305870 - 1116 M 73 219 S 0 1 5 0 2 I 0 78 3 0 2 S 1 2 M 87 261 G 0 3 M 13 39 S 0 2 5 0 2 I 0 300 3 0 2 S 1 1 M 60 180 G 5 0 M 26 78 S 0 2 5 0 2 I 0 165 3 0 2 S 1 1 M 120 360 5 0 2 I 0 625 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1305871 1308263 1116 - . gene_id 1 ; sequence gi|383861634|ref|XP_003706290.1| ; gene_orientation + KQ414608.1 exonerate:protein2genome:local cds 1308044 1308263 . - . KQ414608.1 exonerate:protein2genome:local exon 1308044 1308263 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1308042 1308043 . - . intron_id 1 ; splice_site "GC" KQ414608.1 exonerate:protein2genome:local intron 1307962 1308043 . - . intron_id 1 KQ414608.1 exonerate:protein2genome:local splice3 1307962 1307963 . - . intron_id 0 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1307655 1307961 . - . KQ414608.1 exonerate:protein2genome:local exon 1307655 1307961 . - . insertions 3 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1307653 1307654 . - . intron_id 2 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1307351 1307654 . - . intron_id 2 KQ414608.1 exonerate:protein2genome:local splice3 1307351 1307352 . - . intron_id 1 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1307090 1307350 . - . KQ414608.1 exonerate:protein2genome:local exon 1307090 1307350 . - . insertions 0 ; deletions 5 KQ414608.1 exonerate:protein2genome:local splice5 1307088 1307089 . - . intron_id 3 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1306921 1307089 . - . intron_id 3 KQ414608.1 exonerate:protein2genome:local splice3 1306921 1306922 . - . intron_id 2 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1306560 1306920 . - . KQ414608.1 exonerate:protein2genome:local exon 1306560 1306920 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1306558 1306559 . - . intron_id 4 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1305931 1306559 . - . intron_id 4 KQ414608.1 exonerate:protein2genome:local splice3 1305931 1305932 . - . intron_id 3 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1305871 1305930 . - . KQ414608.1 exonerate:protein2genome:local exon 1305871 1305930 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1305871 1308263 1116 - . alignment_id 1 ; Query gi|383861634|ref|XP_003706290.1| ; Align 1308264 1 219 ; Align 1307960 75 261 ; Align 1307696 162 39 ; Align 1307350 176 180 ; Align 1307170 241 78 ; Align 1306920 268 360 ; Align 1305931 388 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759031|ref|XP_012150706.1| PREDICTED: odorant receptor 67c-like [Megachile rotundata] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 148 -> 218 Target range: 203984 -> 204197 149 : ValPheLeuArgCysLeuThrMetLysTyrAsnAspSerLysLeuPhe<->PheArgA : 167 :!! ! !|||! !:!!|||! :!! !||| !.!||||||||| ! ! . IleThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProT 203985 : ATTACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaa : 204042 168 : laTyrPheProTyrAspValAsnValSerProAsnPheGlnLeuThrMetPheAlaGl : 186 ..|||::: ||||||:::::!! !!!!||| !!|||:!!:!!! !.!..!! !|| hrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGl 204043 : cttattatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCA : 204099 187 : nPheValAlaAlaMetTyrGlyAlaIleThrTyrThrAlaValAspThrPheValAla : 205 |.!.!.!.!! !:!!! !|||:!! !|||! !!.!||||||!.!||| !!!.! nMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGly 204100 : AATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGA : 204156 206 : MetLeuIleLeuHisValCysGlyGlnLeuGluAsnLeu : 218 !!:||||||||||||:!!||||||||||||||||||||| IleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeu 204157 : ATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTT : 204197 vulgar: gi|805759031|ref|XP_012150706.1| 148 218 . KQ414617.1 203984 204197 + 129 M 16 48 G 0 3 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203985 204197 129 + . gene_id 1 ; sequence gi|805759031|ref|XP_012150706.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203985 204197 . + . KQ414617.1 exonerate:protein2genome:local exon 203985 204197 . + . insertions 3 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203985 204197 129 + . alignment_id 1 ; Query gi|805759031|ref|XP_012150706.1| ; Align 203985 149 48 ; Align 204036 165 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857335|ref|XP_003704160.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 152 -> 230 Target range: 204005 -> 204239 153 : GlyLysProGluMetGluArgMetLeuProPheAsnLeuTrpIleAspPheProThrG : 172 ..!:!! !!.!.!!::!!!:!:!:!!!||| ! ::: ::: . AsnGluThrAsnIleLysLysLeuPheProValProThrTyrTyrIleTyrAspIleS 204006 : AACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttattatatttacgatataT : 204063 173 : lyLysSerProTyrPheGluValLeuPheAlaIleGlnMetLeuCysValTyrHisVa : 191 .!:!!!!!||||||||||||:!!:!!||| !:!!|||||| ! !:!! :! erGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMe 204064 : CTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAAT : 204120 192 : lAlaIleSerTyrPheCysPheAspAsnPheLeuCysLeuValCysLeuAsnIleThr : 210 !|||:!!!!!|||.!! !! !!|||||||||!!! ! :!!:!! !|||:!!||| ! tAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeuIleLeuHisIleCys 204121 : GGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGC : 204177 211 : GlyGlnPheArgIleLeuGlnHisArgLeuAlaSerLeuAsnGlyMetLysLysThrA : 230 ||||||!!...!! !|||!:: |||||||||!:!:!!!!. !:!!:!!! !| GlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysHisLeuGluThrPheA 204178 : GGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAACATTTGGAAACTTTTG : 204237 231 : sp : 230 || sp 204238 : AT : 204239 vulgar: gi|383857335|ref|XP_003704160.1| 152 230 . KQ414617.1 204005 204239 + 117 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204006 204239 117 + . gene_id 1 ; sequence gi|383857335|ref|XP_003704160.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204006 204239 . + . KQ414617.1 exonerate:protein2genome:local exon 204006 204239 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204006 204239 117 + . alignment_id 1 ; Query gi|383857335|ref|XP_003704160.1| ; Align 204006 153 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383861634|ref|XP_003706290.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 159 -> 232 Target range: 203999 -> 204218 160 : ValSerAsnGlyThrAspSerIleArgProLeuProPheGluValTrpTyrGlyIleA : 179 |||!!!|||! !|||:!!! !! !!:!! !!!!||| ! ...:::||| | ValThrAsnGluThrAsnIleLysLysLeuPheProValProThrTyrTyrIleTyrA 204000 : GTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttattatatttacg : 204057 180 : spValSerGluSerProArgPheGluValValPheValCysGlnAlaLeuAlaSerTh : 198 ||:::||||||!!!||| !||||||:!!:!!|||:!! !||| ! !.!!! !.. spIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAlaThrLeuVa 204058 : atataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGT : 204114 199 : rIleCysAlaValAlaIleCysSerLeuAspThrAlaCysValThrAlaIleLeuHis : 217 !:!! |||:!!..! ! !.!!:!!|||!.! !! !! !! ! !||||||||| lLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeuIleLeuHis 204115 : GTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTGATCCTTCAT : 204171 218 : ValCysGlyGlnPheLysLeuIleSerValTrpIleSerHisIle : 232 :!!|||||||||!!.:!! !:!! !!..! ! :!!:!!:!!||| IleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIle 204172 : ATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATA : 204218 vulgar: gi|383861634|ref|XP_003706290.1| 159 232 . KQ414617.1 203999 204218 + 109 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204000 204218 109 + . gene_id 1 ; sequence gi|383861634|ref|XP_003706290.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204000 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 204000 204218 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204000 204218 109 + . alignment_id 1 ; Query gi|383861634|ref|XP_003706290.1| ; Align 204000 160 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857757|ref|XP_003704370.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 503 Query range: 68 -> 319 Target range: 3164310 -> 3165542 69 : PheLeuArgSerSerSerLysAlaTyrThrAlaIleLeuMetSerCysLeuSerCy : 87 |||!!!|||!!!!:!!!!! !.!||| !::!:!!|||:!:! !||| !! !!! PhePheArgTrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleCysAlaPheTr 3164311 : TTTTTTAGATGGAACACGATTGGCTACTGGAGTTTACTATTAATTTGTGCGTTCTG : 3164365 88 : sIleIleIleThrValPheValIleGlyPheThrLysArgMetLeuIleCysArgI : 106 ||| !:!:! ! !.!!:!!! !! !|||!:!!..|||! |||!!:! !||| pIleTyrValArgSerLeuLeuThrAspPheSerSerArgLysLeuMetPheArgA 3164366 : GATATACGTGAGATCGCTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAG : 3164422 107 : leTrpValProTyrAsnTyrSerSerThrSerLeuTyrIleValThrSerMetTyr : 124 !|||:!!||||||:!!|||||| !!.!! !!:!!!:!|||:!!|||! !:!::!! laTrpLeuProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHis 3164423 : CATGGTTACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCAT : 3164476 125 : GluGlyMetGlyAlaCysTyrGlyIleSerAlaSerSerAlaCysGluCysLeuTy : 143 :!!!.!!!:!.!||| !! !!!!:!!||| !.!! !!:! !||||| GlnAlaIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTy 3164477 : CAAGCTATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATA : 3164533 144 : rThrGlyLeuLeuLeuHisIleCysCysGlnPheGluIleLeuGluHisArgPheA : 162 |||||||||||||:!!:!!|||! !|||||||||||||||||||||||||||.!.| rThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuA 3164534 : CACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAA : 3164590 163 : rgSerLeuAsnSerAsnProIleTyrThrAlaAsnHisCysAlaSerHisHisHis : 180 ||!:!:!!!!.!!!.!.! ! ! !!:!!!.!!!.!!.||||||..!|||||| !! rgAsnValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAsp 3164591 : GGAACGTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGAT : 3164644 181 : LeuIleTyr{Ly} >>>> Target Intron 1 >>>> {s}TyrAlaGluAl : 188 ! !||||||{:!} 325 bp {!}!:!:!!:!! ArgIleTyr{Gl}++ ++{n}PheSerLysLy 3164645 : CGTATATAC{CA}gt.........................ag{A}TTTTCGAAAAA : 3164993 189 : aValAsnGluGluPheArgGlyIleMetSerPheGlnPhePheSerSerMetSerI : 207 !|||||||||||||||!:! !|||:!!! !! !||||||! !! !|||||||||: sValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerV 3164994 : GGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGG : 3165050 208 : leLeuCysLeuThrIleTyrHisLeuAlaTyrAlaGluAsnSerAlaAlaPheMet : 225 !::!!|||!!!!.!:!!|||!..:!!.!! ! !:!!! ...... |||::: alIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheVal 3165051 : TGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtc : 3165104 226 : AlaThrGlyLeuTyrMetThrCysValLeuCysGlnMetPheTyrTyrCysPheTy : 244 !|||||| !|||..!:!! |||!!:||||||||||||!::|| GluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTy 3165105 : gaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTA : 3165161 245 : rGlyAspMetValLysThrLys >>>> Target Intron 2 >>>> SerIl : 253 ||||:!! |||||| !||| 80 bp |||:! rGlyAsnGluValLysHisLys++ ++SerLe 3165162 : CGGCAACGAAGTGAAACATAAGgt.........................agAGCCT : 3165268 254 : eGluPheIleAspLysLeuPheGlnSerGlyTrpAlaSerTrpAsnGlySerSerL : 272 !:!!.!! ! !!! !:!!|||!!.|||! !|||.!!|||! !|||..!!:! !! uGlnLeuProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValT 3165269 : CCAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCA : 3165325 273 : ysMetValLeuLeuMetValMetArgArgSerArgThrProIleGluPheThrSer : 290 ! !.!||||||!!::!!|||||||||:!! !! !|||||||||||||||||| hrArgAlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheThrSer 3165326 : CCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGT : 3165379 291 : MetHisIleValThrLeuAsnLeuGluSerPheMetSer >>>> Target Int : 304 !!:|||:!!|||:!!:!!||||||||||||||||||:!! 74 bp IleHisValValSerValAsnLeuGluSerPheMetAla++ 3165380 : ATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt............... : 3165423 305 : ron 3 >>>> LeuLeuArgThrSerTyrSerAlaPheAsnLeuMetSerSerTh : 318 :!!:!!!:!|||||||||||||||||||||:!!!!:..!..!!: ++ValIleLysThrSerTyrSerAlaPheAsnMetIleGlnGlnSe 3165424 : ..........agGTAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAACAAAG : 3165537 319 : rArg : 319 !!:! rLys 3165538 : CAAA : 3165542 vulgar: gi|383857757|ref|XP_003704370.1| 68 319 . KQ414646.1 3164310 3165542 + 503 M 115 345 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 67 201 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164311 3165542 503 + . gene_id 1 ; sequence gi|383857757|ref|XP_003704370.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3164311 3164657 . + . KQ414646.1 exonerate:protein2genome:local exon 3164311 3164657 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164658 3164659 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164658 3164982 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3164981 3164982 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164983 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164983 3165184 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165185 3165186 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165185 3165264 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3165263 3165264 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165265 3165420 . + . KQ414646.1 exonerate:protein2genome:local exon 3165265 3165420 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165421 3165422 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165421 3165494 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3165493 3165494 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165495 3165542 . + . KQ414646.1 exonerate:protein2genome:local exon 3165495 3165542 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164311 3165542 503 + . alignment_id 1 ; Query gi|383857757|ref|XP_003704370.1| ; Align 3164311 69 345 ; Align 3164984 185 201 ; Align 3165265 252 156 ; Align 3165495 304 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857757|ref|XP_003704370.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 498 Query range: 68 -> 319 Target range: 3157782 -> 3159014 69 : PheLeuArgSerSerSerLysAlaTyrThrAlaIleLeuMetSerCysLeuSerCy : 87 |||!!!|||!!!!:!!!!! !.!||| !::::::|||::: !! !! PhePheArgTrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePh 3157783 : TTTTTTAGATGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTT : 3157837 88 : sIleIleIleThrValPheValIleGlyPheThrLysArgMetLeuIleCysArgI : 106 !||| !:!:! ! !.!!:!!|||! !|||!:!!!.|||! |||!!:! !||| eIleTyrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgA 3157838 : TATATACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAG : 3157894 107 : leTrpValProTyrAsnTyrSerSerThrSerLeuTyrIleValThrSerMetTyr : 124 !|||:!!||||||:!!|||||| !!.!! !!:!!!:!|||:!!||||||:!::!! laTrpIleProTyrAspTyrSerProAlaProIlePheIleLeuThrSerValHis 3157895 : CATGGATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTCCGTCCAT : 3157948 125 : GluGlyMetGlyAlaCysTyrGlyIleSerAlaSerSerAlaCysGluCysLeuTy : 143 :!!!.!!!:!.!:!! !! !!!!:!!!!! !.!! !!: !||||| GlnAlaIleAlaSerThrIleCysCysThrSerThrValThrValAspThrLeuTy 3157949 : CAAGCTATAGCCTCGACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTATA : 3158005 144 : rThrGlyLeuLeuLeuHisIleCysCysGlnPheGluIleLeuGluHisArgPheA : 162 |||||||||||||:!!:!!|||! !|||||||||||||||||||||||||||.!.| rThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuA 3158006 : CACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAA : 3158062 163 : rgSerLeuAsnSerAsnProIleTyrThrAlaAsnHisCysAlaSerHisHisHis : 180 ||!:!:!!!!.!!!.!.! ! ! !!:!!!.!!!.!!.||||||..!|||||| !! rgAsnValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAsp 3158063 : GGAACGTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGAT : 3158116 181 : LeuIleTyr{Ly} >>>> Target Intron 1 >>>> {s}TyrAlaGluAl : 188 ! !||||||{:!} 325 bp {!}!:!:!!:!! ArgIleTyr{Gl}++ ++{n}PheSerLysLy 3158117 : CGTATATAC{CA}gt.........................ag{A}TTTTCGAAAAA : 3158465 189 : aValAsnGluGluPheArgGlyIleMetSerPheGlnPhePheSerSerMetSerI : 207 !|||||||||||||||!:! !|||:!!! !! !||||||! !! !|||||||||: sValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerV 3158466 : GGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGG : 3158522 208 : leLeuCysLeuThrIleTyrHisLeuAlaTyrAlaGluAsnSerAlaAlaPheMet : 225 !::!!|||!!!!.!:!!|||!..:!!.!! ! !:!!! ...... |||::: alIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheVal 3158523 : TGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtc : 3158576 226 : AlaThrGlyLeuTyrMetThrCysValLeuCysGlnMetPheTyrTyrCysPheTy : 244 !|||||| !|||..!:!! |||!!:||||||||||||!::|| GluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTy 3158577 : gaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGTTGGTA : 3158633 245 : rGlyAspMetValLysThrLys >>>> Target Intron 2 >>>> SerIl : 253 ||||:!! |||||| !||| 80 bp |||:! rGlyAsnGluValLysAspLys++ ++SerLe 3158634 : CGGCAACGAAGTGAAAGATAAGgt.........................agAGCCT : 3158740 254 : eGluPheIleAspLysLeuPheGlnSerGlyTrpAlaSerTrpAsnGlySerSerL : 272 !:!!.!! ! !!! !:!!|||!!.|||! !|||.!!|||! !|||..!!:! !! uGlnLeuProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValT 3158741 : CCAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCA : 3158797 273 : ysMetValLeuLeuMetValMetArgArgSerArgThrProIleGluPheThrSer : 290 ! !.!||||||!!::!!|||||||||:!! !! !|||||||||||||||||| hrArgAlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheThrSer 3158798 : CCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGT : 3158851 291 : MetHisIleValThrLeuAsnLeuGluSerPheMetSer >>>> Target Int : 304 !!:|||:!!|||:!!:!!||||||||||||||||||:!! 74 bp IleHisValValSerValAsnLeuGluSerPheMetAla++ 3158852 : ATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt............... : 3158895 305 : ron 3 >>>> LeuLeuArgThrSerTyrSerAlaPheAsnLeuMetSerSerTh : 318 :!!:!!!:!|||:!!|||||||||||||||:!!!!:..!..!!: ++ValIleLysThrAlaTyrSerAlaPheAsnMetIleGlnGlnSe 3158896 : ..........agGTAATAAAAACTGCGTACTCCGCGTTCAACATGATCCAACAAAG : 3159009 319 : rArg : 319 !!:! rLys 3159010 : CAAA : 3159014 vulgar: gi|383857757|ref|XP_003704370.1| 68 319 . KQ414646.1 3157782 3159014 + 498 M 115 345 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 67 201 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157783 3159014 498 + . gene_id 2 ; sequence gi|383857757|ref|XP_003704370.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3157783 3158129 . + . KQ414646.1 exonerate:protein2genome:local exon 3157783 3158129 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158130 3158131 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158130 3158454 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3158453 3158454 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158455 3158656 . + . KQ414646.1 exonerate:protein2genome:local exon 3158455 3158656 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158657 3158658 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158657 3158736 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3158735 3158736 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158737 3158892 . + . KQ414646.1 exonerate:protein2genome:local exon 3158737 3158892 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158893 3158894 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158893 3158966 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3158965 3158966 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158967 3159014 . + . KQ414646.1 exonerate:protein2genome:local exon 3158967 3159014 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157783 3159014 498 + . alignment_id 2 ; Query gi|383857757|ref|XP_003704370.1| ; Align 3157783 69 345 ; Align 3158456 185 201 ; Align 3158737 252 156 ; Align 3158967 304 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857757|ref|XP_003704370.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 293 Query range: 72 -> 319 Target range: 3153117 -> 3154098 73 : SerSerLysAlaTyrThrAlaIleLeuMetSerCysLeuSerCysIleIleIleTh : 91 !:!:!!|||||||||||| !.!!||| ! !! :!! ! !:!! ||||| AsnAlaLysAlaTyrThrTyrPheLeuAspIleLeuValValValLeuTrpIleTh 3153118 : AACGCTAAGGCTTACACATATTTCCTGGACATCTTGGTAGTCGTTTTATGGATAAC : 3153172 92 : rValPheValIleGlyPheThrLysArgMetLeuIleCysArgIleTrpValProT : 110 | !!:! !!! ! !!:!! !:::||| ... |||::!|||:!!|||| rSerTyrPheThrAspTyrArgArgArgLysPheLysPheArgValTrpLeuProT 3153173 : ATCGTACTTCACGGACTACAGGcgcagaaaattcaaatttcgcgtCTGGTTACCTT : 3153229 111 : yrAsnTyrSerSerThrSerLeuTyrIleValThrSerMetTyrGluGlyMetGly : 128 ||:!! !!!!!!! ! !!:!!!:!! !:!!! !! ! ! :!! !:!: !! yrAspThrThrThrGlnProValPheThrLeuIleTyrCysGlnGlnIleValCys 3153230 : ACGACACTACTACACAACCTGTCTTCACTCTGATCTACTGTCAACAGATCGTCTGC : 3153283 129 : AlaCysTyrGlyIleSerAlaSerSerAlaCysGluCysLeuTyrThrGlyLeuLe : 147 .!!!! |||.!!:!:!:! !!:! ! !|||!!:||||||!:!!:!||||||:! ThrTrpTyrSerValAsnIleAsnValIleCysAspCysLeuPheSerGlyLeuMe 3153284 : ACGTGGTACAGCGTGAATATTAACGTCATTTGCGACTGCCTGTTCAGCGGCCTGAT : 3153340 148 : uLeuHisIleCysCysGlnPheGluIleLeuGluHisArgPheArgSerLeuAsnS : 166 !:!!!!.||||||! !!...!! :!!:!!! !! ! |||!:!! ! tIleGlnIleCysSerIleLeuArgLysMetLysProThrArgArgAsnCysValL 3153341 : GATACAGATTTGCTCAATCTTACGGAAGATGAAACCTACTCGGCGAAACTGTGTGC : 3153397 167 : erAsnProIleTyrThrAlaAsnHisCysAlaSerHisHisHisLeuIleTyrLys : 184 ! ! !!||| !! ! !!.. ! :!! ! ...... ||| euValThrIleIleArgTyrThrSerGlnSerArgGlnGluIleLysArgTyrVal 3153398 : TCGTCACCATAATCAGATATACAAGCCAGTCTCGacaagaaattaaacgatacgTT : 3153451 185 : <->TyrAlaGluAlaValAsnGluGluPheArgGlyIleMetSerPheGlnPhePh : 202 ! |||:!! !|||||||||:!!.!! !!..!:!! !|||.!.|||||| ***LeuAlaGlnIleValAsnGluLysLeuGlyAsnValSerSerIleGlnPheAl 3153452 : TGATTGGCGCAAATAGTGAACGAGAAGCTTGGAAATGTCTCGAGTATACAGTTCGC : 3153508 203 : eSerSerMetSerIleLeuCysLeuThrIleTyrHisLeuAlaTyrAlaGluAsnS : 221 ! !|||! .!! :!!|||!!!!.!:!!|||!..:!!:!! !||| !. aIleSerThrGlyAlaIleCysPheAsnLeuTyrArgMetSerValIleGluLeuG 3153509 : GATAAGCACAGGAGCGATATGCTTCAATCTCTATCGAATGTCGGTGATAGAACTCG : 3153565 222 : erAlaAlaPheMetAlaThrGlyLeuTyrMetThrCysValLeuCysGlnMetPhe : 239 !! !! !|||:!!! !.!! ! ! !! ..!|||:!!|||...|||!!:||| lyProLysPheValGluAlaLeuThrIleThrValCysLeuLeuAlaGlnIlePhe 3153566 : GTCCAAAGTTTGTGGAAGCGTTAACTATCACAGTATGCTTACTCGCGCAGATATTT : 3153619 240 : TyrTyrCysPheTyrGlyAspMetValLysThr >>>> Target Intron 1 : 251 |||||||||!::||||||::: ... 53 bp TyrTyrCysTrpTyrGlyAsnAspArgAsnTyr+- 3153620 : TACTATTGTTGGTAcggtaacgatagaaattacga..................... : 3153657 252 : >>>> LysSerIleGluPheIleAspLysLeuPheGlnSerGlyTrpAlaSerTr : 267 :!!|||:!!|||.!!:!:|||!:!:!! .!.|||..! .!! !! -+GlnSerLeuGluIleValAspArgValThrAsnSerAsnIleThrValSe 3153658 : ....cgCAGAGTCTCGAAATTGTGGACAGAGTAACGAACAGTAATATAACCGTGTC : 3153756 268 : pAsnGlySerSerLysMetValLeuLeuMetValMetArgArgSerArgThrProI : 286 !:!!! !|||||||||! !:!!|||:!!:!!:!!!!:||||||:!! ! !|||: rAspGluSerSerLysLysIleLeuValLeuMetIleArgArgAlaLeuGluProV 3153757 : GGACGAAAGCTCCAAGAAGATTCTGGTATTGATGATACGACGAGCTTTGGAGCCTG : 3153813 287 : leGluPheThrSerMetHisIleValThrLeuAsnLeuGluSerPheMetSer > : 304 !!|||||||||.!!:!:!.!|||:!!:!!:!!|||||||||||||||! !||| alGluPheThrGlyLeuArgIleMetSerValAsnLeuGluSerPheThrSer++ 3153814 : TCGAGTTCACCGGCCTTCGTATCATGTCTGTTAATCTCGAGTCATTCACGTCGgt. : 3153869 305 : >>> Target Intron 2 >>>> LeuLeuArgThrSerTyrSerAlaPheAsn : 313 184 bp ||||||!:!:!!||||||:!!||||||||| ++LeuLeuLysSerSerTyrAlaAlaPheAsn 3153870 : ........................agCTGTTGAAATCCTCCTACGCGGCTTTCAAT : 3154078 314 : LeuMetSerSerThrArg : 319 :!!:!:...... ||| MetLeuGlnGluArgArg 3154079 : ATGCTCCaggaaagaagg : 3154098 vulgar: gi|383857757|ref|XP_003704370.1| 72 319 . KQ414646.1 3153117 3154098 + 293 M 112 336 G 0 3 M 66 198 5 0 2 I 0 49 3 0 2 M 53 159 5 0 2 I 0 180 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153118 3154098 293 + . gene_id 3 ; sequence gi|383857757|ref|XP_003704370.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3153118 3153654 . + . KQ414646.1 exonerate:protein2genome:local exon 3153118 3153654 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3153655 3153656 . + . intron_id 1 ; splice_site "gA" KQ414646.1 exonerate:protein2genome:local intron 3153655 3153707 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3153706 3153707 . + . intron_id 0 ; splice_site "CG" KQ414646.1 exonerate:protein2genome:local cds 3153708 3153866 . + . KQ414646.1 exonerate:protein2genome:local exon 3153708 3153866 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3153867 3153868 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3153867 3154050 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3154049 3154050 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3154051 3154098 . + . KQ414646.1 exonerate:protein2genome:local exon 3154051 3154098 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153118 3154098 293 + . alignment_id 3 ; Query gi|383857757|ref|XP_003704370.1| ; Align 3153118 73 336 ; Align 3153457 185 198 ; Align 3153708 251 159 ; Align 3154051 304 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857757|ref|XP_003704370.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 191 Query range: 70 -> 185 Target range: 3160053 -> 3160401 71 : ArgSerSerSerLysAlaTyrThrAlaIleLeuMetSerCysLeuSerCysIleIl : 89 |||!.! !|||! !|||||||||!.! ! !:!: ! !! !!!! !!:!! ArgLysLeuSerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValTr 3160054 : AGAAAGCTCTCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTATG : 3160108 90 : eIleThrValPheValIleGlyPheThrLysArgMetLeuIleCysArgIleTrpV : 108 !!: ! ! !:!!! !.!|||! !! ||| !||| ! !|||:!!|||: pMetLeuSerAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrpL 3160109 : GATGTTGTCGGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGGT : 3160165 109 : alProTyrAsnTyrSerSerThr<->SerLeuTyrIleValThrSerMetTyrGlu : 125 !!|||!:!:!!|||!!!:!!||| .!!:!!!:!! !:!!|||! ! |||:!! euProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGln 3160166 : TACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAG : 3160219 126 : GlyMetGlyAlaCysTyrGlyIleSerAlaSerSerAlaCysGluCysLeuTyrTh : 144 !:!: ! ! !:! !! !!!!|||! !! !!.! !!!: !|||!:!!: PheValThrLeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheSe 3160220 : TTTGTAACTCTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCAG : 3160276 145 : rGlyLeuLeuLeuHisIleCysCysGlnPheGluIleLeuGluHisArgPheArgS : 163 !|||||||||:!!||||||! !||||||||||||||||||:!!||||||.!.!:!| rGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysS 3160277 : CGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGA : 3160333 164 : erLeuAsnSerAsnProIleTyrThrAlaAsnHisCysAlaSerHisHisHisLeu : 181 ||:!!!!. !!:!! ! |||:!!|||!!.!!.||||||! !||||||:!!! ! erIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrArg 3160334 : GCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGC : 3160387 182 : IleTyrLysTyr : 185 |||||||||!:! IleTyrLysPhe 3160388 : ATATACAAGTTT : 3160401 vulgar: gi|383857757|ref|XP_003704370.1| 70 185 . KQ414646.1 3160053 3160401 + 191 M 45 135 G 0 3 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160054 3160401 191 + . gene_id 4 ; sequence gi|383857757|ref|XP_003704370.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160054 3160401 . + . KQ414646.1 exonerate:protein2genome:local exon 3160054 3160401 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160054 3160401 191 + . alignment_id 4 ; Query gi|383857757|ref|XP_003704370.1| ; Align 3160054 71 135 ; Align 3160192 116 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857757|ref|XP_003704370.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 187 Query range: 179 -> 308 Target range: 3178372 -> 3178917 180 : HisLeuIleTyrLysTyrAlaGluAlaValAsnGluGluPheArgGlyIleMetSe : 198 :::...||| :::!:!.!!:!!.!!|||||| ! !|||!:! !!!:!!:! AsnPheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePh 3178373 : aatttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTT : 3178427 199 : rPheGlnPhePheSerSerMetSerIleLeuCysLeuThrIleTyrHisLeuAlaT : 217 !.!.||||||! !! !||| !!!!:!:|||||||||!:!|||||| ! :!!:!! eLeuGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerT 3178428 : CCTGCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGA : 3178484 218 : yrAlaGluAsn<->SerAlaAlaPheMetAlaThrGlyLeuTyrMetThrCysVal : 234 !.!. ||| ! !|||:!: ! !!.!! !|||:!: !|||:!! hrIleAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMet 3178485 : CGATTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATG : 3178538 235 : LeuCysGlnMetPheTyrTyrCysPheTyrGlyAspMetValLysThrLys >>> : 252 ||| |||:!!!:!! ||||||!::!:!|||:!! !|||! ! !||| LeuThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys++ 3178539 : CTCACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAGgt... : 3178594 253 : > Target Intron 1 >>>> SerIleGluPheIleAspLysLeuPheGlnSe : 262 155 bp ||| !:!! ! !!!: :!!!:!:!!! ++SerGluLysValGlyGluAlaIleTyrGluMe 3178595 : ......................agAGCGAAAAAGTAGGCGAAGCTATTTACGAGAT : 3178777 263 : rGlyTrpAlaSerTrpAsnGlySerSerLysMetValLeuLeuMetValMetArgA : 281 !! !|||.!!:!! ! !..!! !!:!! ! !||||||:!!:!!||| !| tAspTrpThrAlaLeuProThrAspIleArgLysAspLeuLeuLeuIleMetAlaA 3178778 : GGACTGGACGGCACTTCCCACCGATATAAGGAAAGATCTATTGCTGATCATGGCGA : 3178834 282 : rgSerArgThrProIleGluPheThrSerMetHisIleValThrLeuAsnLeuGlu : 299 |||||!:! !|||:!!:!!.!.|||||| |||:!!|||..!|||::! !||| rgSerLysArgProValLysMetThrSerGlyHisValValValLeuSerAlaGlu 3178835 : GATCAAAACGACCTGTTAAAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAA : 3178888 300 : SerPheMetSerLeuLeuArgThrSer : 308 ||||||||||||:!! !|||! !||| SerPheMetSerValSerArgIleSer 3178889 : TCATTTATGTCTGTTAGTAGAATTTCC : 3178917 vulgar: gi|383857757|ref|XP_003704370.1| 179 308 . KQ414646.1 3178372 3178917 + 187 M 41 123 G 0 3 M 31 93 5 0 2 I 0 151 3 0 2 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178373 3178917 187 + . gene_id 5 ; sequence gi|383857757|ref|XP_003704370.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3178373 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178373 3178591 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178592 3178593 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3178592 3178746 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3178745 3178746 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3178747 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178747 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178373 3178917 187 + . alignment_id 5 ; Query gi|383857757|ref|XP_003704370.1| ; Align 3178373 180 123 ; Align 3178499 221 93 ; Align 3178747 252 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857757|ref|XP_003704370.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 108 -> 185 Target range: 3174378 -> 3174612 109 : ProTyrAsnTyrSerSerThr<->SerLeuTyrIleValThrSerMetTyrGluGl : 126 |||!:!:!!|||!!!:!!||| .!!:!!!:!! !:!!|||! ! |||:!! ProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGlnPh 3174379 : CCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAGTT : 3174433 127 : yMetGlyAlaCysTyrGlyIleSerAlaSerSerAlaCysGluCysLeuTyrThrG : 145 !:!: ! ! !:! !! !||||||! !! !!.!! !!!: !|||!:!!:!| eValThrLeuIlePheLeuThrSerAlaIleIleGlySerAspAsnLeuPheSerG 3174434 : TGTAACTCTGATATTCCTTACTTCTGCTATTATCGGTTCTGACAATCTATTCAGCG : 3174490 146 : lyLeuLeuLeuHisIleCysCysGlnPheGluIleLeuGluHisArgPheArgSer : 163 ||||||||:!!||||||! !||||||||||||||||||:!!||||||.!.!:!||| lyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysSer 3174491 : GACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGAGC : 3174544 164 : LeuAsnSerAsnProIleTyrThrAlaAsnHisCysAlaSerHisHisHisLeuIl : 182 :!!!!. !!:!! ! |||:!!|||!!.!!.||||||! !||||||:!!! !|| IleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrArgIl 3174545 : ATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGCAT : 3174601 183 : eTyrLysTyr : 185 |||||||!:! eTyrLysPhe 3174602 : ATACAAGTTT : 3174612 vulgar: gi|383857757|ref|XP_003704370.1| 108 185 . KQ414646.1 3174378 3174612 + 157 M 7 21 G 0 3 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174379 3174612 157 + . gene_id 6 ; sequence gi|383857757|ref|XP_003704370.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174379 3174612 . + . KQ414646.1 exonerate:protein2genome:local exon 3174379 3174612 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3174379 3174612 157 + . alignment_id 6 ; Query gi|383857757|ref|XP_003704370.1| ; Align 3174379 109 21 ; Align 3174403 116 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857757|ref|XP_003704370.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 64 -> 183 Target range: 3150014 -> 3150371 65 : ValLeuSerLeuPheLeuArgSerSerSerLysAlaTyrThrAlaIleLeuMetSe : 83 !.!|||..!:!!.!!! !|||||| !!!!! !|||||| !:!::!! AlaLeuGlnMetLeuTyrArgSerValThrIleTyrTyrThrIleLeuValGluLe 3150015 : GCTTTACAGATGCTTTACAGGTCGGTGACGATTTACTACACGATTCTGGTGGAACT : 3150069 84 : rCysLeuSerCysIleIleIleThrValPheValIleGlyPheThrLysArgMetL : 102 ! :!! !|||!!:|||:!!:!! !!!.:!! !! !|||!.!:!!||| | uThrValLeuCysMetIleLeuSerSerLeuLeuGlyAspPheAsnGluArgGluL 3150070 : CACGGTCCTCTGTATGATCCTCTCTTCGTTGCTCGGCGACTTTAACGAGCGGGAAC : 3150126 103 : euIleCysArgIleTrpValProTyrAsnTyrSerSerThrSerLeuTyrIleVal : 120 || ! !||| !|||:!!|||!:!:!!|||||| ! !!!!!! !||| !:!! euAlaTyrArgAlaTrpLeuProPheAspTyrSerLeuProThrTyrTyrTyrIle 3150127 : TGGCGTACAGAGCCTGGCTGCCCTTCGATTACTCTCTGCCAACTTACTATTACATC : 3150180 121 : ThrSerMetTyrGluGlyMetGlyAlaCysTyrGlyIleSerAlaSerSerAlaCy : 139 .!!! !:!::!!:!! !:!:!.! ! ! ! ! !:!!!:! !||||| AlaTyrValHisGlnIleValAlaLeuIleGlyThrSerLeuSerAsnValAlaCy 3150181 : GCGTACGTTCATCAGATCGTCGCGCTGATCGGTACGTCGCTTTCGAACGTCGCCTG : 3150237 140 : sGluCysLeuTyrThrGlyLeuLeuLeuHisIleCysCysGlnPheGluIleLeuG : 158 |!!: :!! ! !|||||||||:!!||| !||| !!||| |||||||||: sAspValIleIleCysGlyLeuLeuValHisAlaCysGlyGlnGlnGluIleLeuL 3150238 : CGACGTGATCATCTGCGGGTTGCTCGTTCACGCTTGCGGCCAACAGGAGATTCTCA : 3150294 159 : luHisArgPheArgSerLeuAsnSerAsnProIleTyrThrAlaAsnHisCysAla : 176 !!||||||.!.!:!..!:!!!....!.!.! !! !.! !... ! !!.! ysHisArgMetLysGluMetThrGlnGluGlnArgProAsnIleGlyLysIleVal 3150295 : AGCACAGAATGAAGGAGATGACGCAGGAACAGAGGCCGAATATCGGGAAAATCGTT : 3150348 177 : SerHisHisHisLeuIleTyr : 183 !! !||| !!! !:!!||| ArgPheHisAspTyrLeuTyr 3150349 : CGTTTCCACGATTATCTTTAC : 3150371 vulgar: gi|383857757|ref|XP_003704370.1| 64 183 . KQ414646.1 3150014 3150371 + 149 M 119 357 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150015 3150371 149 + . gene_id 7 ; sequence gi|383857757|ref|XP_003704370.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150015 3150371 . + . KQ414646.1 exonerate:protein2genome:local exon 3150015 3150371 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150015 3150371 149 + . alignment_id 7 ; Query gi|383857757|ref|XP_003704370.1| ; Align 3150015 65 357 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857757|ref|XP_003704370.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 70 -> 184 Target range: 3180047 -> 3180389 71 : ArgSerSerSerLysAlaTyrThrAlaIleLeuMetSerCysLeuSerCysIleIl : 89 |||!.!!:!:!! !|||||| !:!!:!! !! !! :!!:!!! ! !|| ArgLysAsnAlaValArgTyrThrMetValValGluMetSerValAlaSerThrIl 3180048 : AGGAAAAACGCTGTCAGATACACAATGGTAGTCGAGATGTCGGTCGCCTCGACTAT : 3180102 90 : eIleThrValPheValIleGlyPheThrLysArgMetLeuIleCysArgIleTrpV : 108 |:!!!.! !!!.|||! !..!||| ! ! !!! |||! !! !||| !||| eLeuAsnSerLeuValThrAsnPheGlnHisGlyArgLeuThrTyrArgGlyTrpP 3180103 : TTTAAACTCGTTAGTGACCAACTTTCAACACGGCAGACTAACCTACAGAGGCTGGT : 3180159 109 : alProTyrAsnTyrSerSerThrSerLeuTyrIleValThrSerMetTyrGluGly : 126 !!||||||:!!|||!!!!!!.!! !|||!:! !:!!|||! ! :!! ! heProTyrAspTyrThrThrAlaValLeuPheProLeuThrTyrAlaLeuGlnLeu 3180160 : TCCCTTACGATTACACGACCGCCGTACTTTTTCCATTGACATACGCTCTGCAGCTA : 3180213 127 : MetGlyAlaCysTyrGlyIleSerAlaSerSerAlaCysGluCysLeuTyrThrGl : 145 :!: !!!.! ! ! !!!! ! ! !:!! !!: !|||!:! !|| LeuCysValLeuValTyrSerTrpIleHisValSerValAspIleLeuPhePheGl 3180214 : TTATGCGTGCTCGTATATTCCTGGATCCACGTTTCAGTGGATATTCTCTTCTTCGG : 3180270 146 : yLeuLeuLeuHisIleCysCysGlnPheGluIleLeuGluHisArgPheArgSerL : 164 |||||||:!!!!.:!:||||||||||||!!:|||||| ||||||!!!|||: yLeuLeuMetGlnLeuCysCysGlnPheAspIleLeuPheSerArgPheSerSerI 3180271 : ACTGTTGATGCAACTGTGCTGTCAATTCGAcattctcttctctcgtttcAGTAGCA : 3180327 165 : euAsnSerAsnProIleTyrThrAlaAsnHisCysAlaSerHisHisHisLeuIle : 182 !!!..|||.!. !! !..! !......||| ! !!|||||| !! !||| leThrSerGluAsnLysGlyValLeuArgArgCysIleArgHisHisAspArgIle 3180328 : TAACGTCGGAGAACAAGGGTGTTTTACGAAGATGCATTCGTCATCACGACAGAATT : 3180381 183 : TyrLys : 184 |||::! TyrArg 3180382 : TACCGG : 3180389 vulgar: gi|383857757|ref|XP_003704370.1| 70 184 . KQ414646.1 3180047 3180389 + 149 M 114 342 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180048 3180389 149 + . gene_id 8 ; sequence gi|383857757|ref|XP_003704370.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180048 3180389 . + . KQ414646.1 exonerate:protein2genome:local exon 3180048 3180389 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180048 3180389 149 + . alignment_id 8 ; Query gi|383857757|ref|XP_003704370.1| ; Align 3180048 71 342 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857757|ref|XP_003704370.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 251 -> 312 Target range: 3161001 -> 3161184 252 : SerIleGluPheIleAspLysLeuPheGlnSerGlyTrpAlaSerTrpAsnGlySe : 270 |||:!!|||.!! !|||! !:!!|||:!!|||..!|||.!!:!! !!:! !|| SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSe 3161002 : AGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAG : 3161056 271 : rSerLysMetValLeuLeuMetValMetArgArgSerArgThrProIleGluPheT : 289 |!!!|||! !..!||||||! !:!!||| !|||||| !! !||||||||||||| rThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheT 3161057 : CACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCA : 3161113 290 : hrSerMetHisIleValThrLeuAsnLeuGluSerPheMetSerLeuLeuArgThr : 307 ||.!! !:!! !! !!:!!|||||||||||||||! |||:!!! ! hrGlyAlaPheValPheProValAsnLeuGluSerPheLysSerValCysIleLys 3161114 : CCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAAAGTGTTTGTatcaaa : 3161167 308 : SerTyrSerAlaPhe : 312 ||| ||| IleTyrIlePhePhe 3161168 : atatatatatttttc : 3161184 vulgar: gi|383857757|ref|XP_003704370.1| 251 312 . KQ414646.1 3161001 3161184 + 123 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3161002 3161184 123 + . gene_id 9 ; sequence gi|383857757|ref|XP_003704370.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3161002 3161184 . + . KQ414646.1 exonerate:protein2genome:local exon 3161002 3161184 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3161002 3161184 123 + . alignment_id 9 ; Query gi|383857757|ref|XP_003704370.1| ; Align 3161002 252 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857757|ref|XP_003704370.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 251 -> 312 Target range: 3175212 -> 3175395 252 : SerIleGluPheIleAspLysLeuPheGlnSerGlyTrpAlaSerTrpAsnGlySe : 270 |||:!!|||.!! !|||! !:!!|||:!!|||..!|||.!!:!! !!:! !|| SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSe 3175213 : AGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAG : 3175267 271 : rSerLysMetValLeuLeuMetValMetArgArgSerArgThrProIleGluPheT : 289 |!!!|||! !..!||||||! !:!!||| !|||||| !! !||||||||||||| rThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheT 3175268 : CACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCA : 3175324 290 : hrSerMetHisIleValThrLeuAsnLeuGluSerPheMetSerLeuLeuArgThr : 307 ||.!! !:!! !! !!:!!|||||||||||||||! |||:!!! ! hrGlyAlaPheValPheProValAsnLeuGluSerPheLysSerValCysIleLys 3175325 : CCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAAAGTGTTTGTatcaaa : 3175378 308 : SerTyrSerAlaPhe : 312 ||| ||| IleTyrIlePhePhe 3175379 : atatatatatttttc : 3175395 vulgar: gi|383857757|ref|XP_003704370.1| 251 312 . KQ414646.1 3175212 3175395 + 123 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3175213 3175395 123 + . gene_id 10 ; sequence gi|383857757|ref|XP_003704370.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3175213 3175395 . + . KQ414646.1 exonerate:protein2genome:local exon 3175213 3175395 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3175213 3175395 123 + . alignment_id 10 ; Query gi|383857757|ref|XP_003704370.1| ; Align 3175213 252 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383861634|ref|XP_003706290.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 165 -> 237 Target range: 3157869 -> 3158085 166 : SerIleArgProLeuProPheGluValTrpTyrGlyIleAspValSerGluSerPr : 184 |||! !||| !||| !|||..!!.!||| ! !||| !||| :!!|| SerAsnArgLysLeuMetPheArgAlaTrpIleProTyrAspTyrSerProAlaPr 3157870 : AGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACGATTACTCCCCTGCGCC : 3157924 185 : oArgPheGluValValPheValCysGlnAlaLeuAlaSerThrIleCysAlaValA : 203 |! !||| :!!..!! !||| !||||||:!!|||||||||||||||..!..!: oIlePheIleLeuThrSerValHisGlnAlaIleAlaSerThrIleCysCysThrS 3157925 : CATTTTTATCCTTACCTCCGTCCATCAAGCTATAGCCTCGACGATATGTTGCACTT : 3157981 204 : laIleCysSerLeuAspThrAlaCysValThrAlaIleLeuHisValCysGlyGln : 221 !!! ! !!!!:!!|||||| !! !..! ! !:!::!!:!!:!!! ! !!||| erThrValThrValAspThrLeuTyrThrGlyLeuLeuIleAsnIleTyrCysGln 3157982 : CGACCGTCACTGTGGATACTCTATACACTGGCTTGTTGATTAATATCTACTGCCAG : 3158035 222 : PheLysLeuIleSerValTrpIleSerHisIleGlyPheGluThrAsp : 237 |||:!!:!!:!!..! ! ! :!!!!!:!!:!! ! !||| !||| PheGluIleLeuGluHisArgLeuArgAsnValLysThrGluGlnAsp 3158036 : TTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAACTGAGCAGGAT : 3158085 vulgar: gi|383861634|ref|XP_003706290.1| 165 237 . KQ414646.1 3157869 3158085 + 103 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157870 3158085 103 + . gene_id 1 ; sequence gi|383861634|ref|XP_003706290.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3157870 3158085 . + . KQ414646.1 exonerate:protein2genome:local exon 3157870 3158085 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157870 3158085 103 + . alignment_id 1 ; Query gi|383861634|ref|XP_003706290.1| ; Align 3157870 166 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857773|ref|XP_003704378.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 620 Query range: 0 -> 289 Target range: 3154957 -> 3156012 1 : MetCysGlyCysTrpArgProArgSerTrpAlaSerThrTyrLysLysLeuLeuTy : 19 ||||||||| !|||! !|||! !|||! ||| !! !!:!|||!:!!!! !|| MetCysGlyLeuTrpProProProSerSerAlaProLeuPheLysArgPheAlaTy 3154958 : ATGTGCGGTCTCTGGCCACCGCCATCATCAGCTCCGCTGTTTAAAAGATTCGCCTA : 3155012 20 : rThrValTyrThrValPheValPheThrLeuLeuAsnThrValMetValLeuGlnI : 38 |:!!|||!:!:!! !!:!..!!!.! !|||:!! !!! !..!:!: !! !|||| rSerValPheSerTrpTyrThrLeuIleLeuValTyrIleThrValPheSerGlnI 3155013 : CTCTGTATTCTCGTGGTACACGTTAATACTGGTGTACATCACGGTTTTCAGCCAAA : 3155069 39 : leMetAspLeuValLeuAsnValGluAsnGlnAspGluLeuSerGluGlyPheTyr : 56 |||||||||||:!!:!!|||||| !!.!|||||||||!!!|||!!:..!|||||| leMetAspLeuIleValAsnValThrThrGlnAspGluPheSerAspAsnPheTyr 3155070 : TCATGGACCTAATCGTGAACGTGACGACTCAAGACGAGTTTAGCGACAATTTTTAC : 3155123 57 : MetMetLeuThrMetPheValAlaCysHisLysMetTyrSerIleLeuThrSerLy : 75 !!::!:|||.!! :!!:!!! !!.||| ! |||:!:|||!.!|||:: IleLeuLeuAlaCysAlaIleSerLeuGlnLysAlaGlnSerValLeuAsnSerAr 3155124 : ATACTTCTGGCGTGTGCGATATCCTTGCAGAAAGCACAGAGTGTGTTAAACAGTCG : 3155180 76 : sLysAsnIleValAlaLeuThrArgIleLeuGluAsnGluProPheLeuProGluA : 94 :||||||:!! ! !:!!! ! !:!!|||.!.!:!|||||||||! !|||||| gLysAsnValHisArgMetIleAspLeuLeuAsnSerGluProPheHisProGluC 3155181 : TAAGAATGTCCACCGTATGATCGATCTTTTGAACAGCGAACCTTTTCATCCAGAAT : 3155237 95 : snGluGluGluValAspIleArgLysLysPheAspAspIleAla{Gl} >>>> T : 109 !:!!||||||:!!!!:||||||!..!:!.!!..!!!: !|||{::} ysLysGluGluIleGluIleArgSerArgIleSerGluHisAla{Ar}++ 3155238 : GTAAGGAGGAAATCGAGATAAGAAGTAGGATCTCCGAGCACGCC{AG}gt...... : 3155286 110 : arget Intron 1 >>>> {n}LysGlnAlaTyrValTyrThrThrAlaIleGl : 120 119 bp {!}!:!...:!! ! !|||.!!! ! !:!!|| ++{g}ArgSerSerThrTyrTyrAlaIleLeuValGl 3155287 : ...................ag{A}AGAAGCTCAACCTATTACGCGATTCTGGTCGA : 3155434 121 : uValAlaValLeuPheGlnSerCysValGlyAlaLeuAsnMetGlyGlyGlnLysL : 139 | !.!!|||:!! ! !|||! !! !!.! !|||!!. ! !..!!:: | uSerThrValMetThrLeuSerPheGlyAlaLeuLeuLysProGluSerArgProL 3155435 : ATCGACGGTGATGACTTTGTCTTTCGGTGCACTGTTGAAACCAGAATCACGTCCTT : 3155491 140 : euProPheArgMetTrpLeuProGlnLysTyrLeuSerLeuThrValLeuValIle : 157 |||||!:!|||!!:||||||||| !!.||| ! !!|||! !..!! ! ! euProTyrArgIleTrpLeuProCysAsnTyrThrProLeuIleThrTyrCysSer 3155492 : TACCGTATCGAATTTGGCTACCTTGCAATTACACCCCGTTAATTACTTACTGTTCG : 3155545 158 : AlaAsnIleGlnGlnAlaMetSerLeuIleThrGlyAlaLeuValHisIleGlyCy : 176 ! !!! !! |||..!:!!:!!||| ! !.!!|||:!!:!!|||:!!!.!|| IleTyrThrLeuGlnCysValAlaLeuAlaLeuSerAlaMetMetHisValAlaCy 3155546 : ATTTACACTCTCCAATGTGTGGCACTCGCTCTAAGCGCTATGATGCACGTCGCCTG : 3155602 177 : sAspAsnLeuIleTrpGlyLeuLeuLeuHisThrCysSerGlnIleGluIleLeuG : 195 ||||!:!||||||!! ||||||||||||||||||! !.!!|||||||||||||||! sAspSerLeuIleCysGlyLeuLeuLeuHisThrTyrGlyGlnIleGluIleLeuG 3155603 : CGACAGTTTGATCTGCGGCCTGCTGTTACACACTTACGGCCAGATCGAGATCCTCG : 3155659 196 : luTyrArgLeuArgAlaIleLysProGlyGluSerGlnSerAlaLysSerSerAla : 213 ! !||||||!::...|||||| ...||||||:!!!!!:!!|||! !!!!!.! lyCysArgLeuLysThrIleLysGluAsnGluSerLysThrSerLysLeuCysVal 3155660 : GTTGTCGTCTGAaaacgataaaagaaaacgagagtAAGACGTCCAAGTTGTGCGTT : 3155713 214 : ArgTyrHisAspLeuValTyr{Ar} >>>> Target Intron 2 >>>> {g : 221 ||||||:!!:!!|||:!!|||{||} 69 bp {| ArgTyrAsnAsnLeuIleTyr{Ar}++ ++{g 3155714 : CGTTACAACAACCTTATCTAT{CG}gt.........................ag{A : 3155808 222 : }PheAlaLysMetIleAsnGluGluPheLysMetValIleValValGlnPheThrV : 240 }|||.!! ||||||||||||:!!|||:!!|||!.!||| !!..!||||||.!!| }PheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAlaV 3155809 : }TTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGG : 3155863 241 : alThrThrMetIleValCysPheAsnLeuTyrLeuLeuLeuThrThrGluAsnMet : 258 ||!:!|||:!! :!!||||||||||||||||||||| ! !:!!!!: ! ! alSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValThr 3155864 : TGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGACG : 3155917 259 : AsnThrLysPheLeuIleValValLeuTyrThrCysSerMetLeuThrGlnIlePh : 277 ! !!:!!:!:!! !:!!:!!:!!|||!:! !!!!!||||||||||||||||| ProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIlePh 3155918 : CCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATATT : 3155974 278 : eIleTyrCysTrpTyrGlyThrLysValLysMetLys : 289 |||||||||||||||||||!.!:!!||||||:!!||| eIleTyrCysTrpTyrGlyAsnGluValLysLeuLys 3155975 : CATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAG : 3156012 vulgar: gi|383857773|ref|XP_003704378.1| 0 289 . KQ414646.1 3154957 3156012 + 620 M 108 324 S 0 2 5 0 2 I 0 115 3 0 2 S 1 1 M 111 333 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3154958 3156012 620 + . gene_id 1 ; sequence gi|383857773|ref|XP_003704378.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3154958 3155283 . + . KQ414646.1 exonerate:protein2genome:local exon 3154958 3155283 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3155284 3155285 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3155284 3155402 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3155401 3155402 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3155403 3155738 . + . KQ414646.1 exonerate:protein2genome:local exon 3155403 3155738 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3155739 3155740 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3155739 3155807 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3155806 3155807 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3155808 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155808 3156012 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3154958 3156012 620 + . alignment_id 1 ; Query gi|383857773|ref|XP_003704378.1| ; Align 3154958 1 324 ; Align 3155404 110 333 ; Align 3155809 222 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857773|ref|XP_003704378.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 460 Query range: 132 -> 353 Target range: 3164391 -> 3165530 133 : AsnMetGlyGlyGlnLysLeuProPheArgMetTrpLeuProGlnLysTyrLeuSe : 151 :!!.!..!!.!!::!|||||| !|||||| ||||||||| ! ! |||! ! ! AspPheSerSerArgLysLeuMetPheArgAlaTrpLeuProTyrAspTyrSerPr 3164392 : GATTTTAGTAGTAGAAAACTGATGTTTCGAGCATGGTTACCCTACGATTACTCCCC : 3164446 152 : rLeuThrValLeuValIleAlaAsnIleGlnGlnAlaMetSerLeuIleThrGlyA : 170 ! ! !!:!!!!!:!!:!!.!! !:!!!!.||||||!!::!! !! ! ! !!. oAlaProIlePheIleLeuThrPheValHisGlnAlaIleAlaAlaThrIleCysC 3164447 : TGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCGACGATATGTT : 3164503 171 : laLeuValHisIleGlyCysAspAsnLeuIleTrpGlyLeuLeuLeuHisThrCys : 188 .! ! ! !:!! ! |||::!||| ! |||||||||:!!:!!! !! ! ysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLeuIleAsnIleTyr 3164504 : GCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTGATTAATATCTAC : 3164557 189 : SerGlnIleGluIleLeuGluTyrArgLeuArgAlaIleLysProGlyGluSerGl : 207 !!!|||.!!||||||||||||:!!||||||||| !:!!||| !!! !:!!..!.! CysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysThrGluGlnAspAs 3164558 : TGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAACTGAGCAGGATGA : 3164614 208 : nSerAlaLysSerSerAlaArgTyrHisAspLeuValTyr{Ar} >>>> Targe : 221 .|||!.!|||..!!!!|||!:!:!!||||||! !:!!|||{!:} pSerValLysGlnCysAlaGlnHisHisAspArgIleTyr{Gl}++ 3164615 : CTCTGTGAAGCAATGTGCTCAACATCACGATCGTATATAC{CA}gt.......... : 3164660 222 : t Intron 1 >>>> {g}PheAlaLysMetIleAsnGluGluPheLysMetVal : 233 325 bp {!}|||:!!|||! !:!:|||||||||||||||:!!:!! ++{n}PheSerLysLysValAsnGluGluPheLysLeuIle 3164661 : ...............ag{A}TTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATA : 3165017 234 : IleValValGlnPheThrValThrThrMetIleValCysPheAsnLeuTyrLeuLe : 252 :!::!! !|||||| !:!!!:!! ! !:!::!!||||||||||||||| ! LeuIleSerGlnPheCysIleSerMetSerValIleCysPheAsnLeuTyr---Ar 3165018 : CTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTTCAATCTTTAC---CG : 3165071 253 : uLeuThrThrGluAsnMetAsnThrLysPheLeuIleValValLeuTyrThrCysS : 271 !:!!||| ! !!.|||:!:|||||||||::: ::::!!||||||:!!! !! gMetThrGlnIleLysMetAspThrLysPheValGluIleIleLeuTyrSerPheC 3165072 : AATGACACAGATCAAAATGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCT : 3165128 272 : erMetLeuThrGlnIlePheIleTyrCysTrpTyrGlyThrLysValLysMetLys : 289 !!! :!!|||||||||||| !|||||||||||||||!.!:!!|||||| ||| ysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGluValLysHisLys 3165129 : GCACTATCACGCAGATATTTTACTATTGCTGGTACGGCAACGAAGTGAAACATAAG : 3165182 290 : >>>> Target Intron 2 >>>> SerLeuGluValSerAspMetValPhe : 298 80 bp ||||||:!!:!! !! !!|||:!!||| ++ ++SerLeuGlnLeuProTyrMetIlePhe 3165183 : gt.........................agAGCCTCCAACTTCCATACATGATATTT : 3165289 299 : ArgThrAspTrpMetPhePheSerLysAspValLysArgIleLeuTyrValIleMe : 317 !.!!:!||||||! !! !!!.!:!!!.:!!|||! ||| !|||! :!!!!:|| HisSerAspTrpThrSerLeuAsnAsnAsnValThrArgAlaLeuLeuIleMetMe 3165290 : CACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGAGCACTTTTAATCATGAT : 3165346 318 : tArgArgAlaAsnValSerIleGluPheArgSerAlaHisValValSerMetAsnL : 336 |||||||||| ! !!|||||||||! !||| !||||||||||||:!!|||| tArgArgAlaValArgProIleGluPheThrSerIleHisValValSerValAsnL 3165347 : GAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATC : 3165403 337 : euGluAlaPheValAsn >>>> Target Intron 3 >>>> LeuLeuLysT : 345 |||||:!!|||:!! 74 bp :!!:!!|||| euGluSerPheMetAla++ ++ValIleLysT 3165404 : TCGAATCCTTCATGGCAgt.........................agGTAATAAAAA : 3165504 346 : hrSerTyrSerAlaTyrAsnValLeu : 353 ||||||||||||||!:!|||:!!:!! hrSerTyrSerAlaPheAsnMetIle 3165505 : CTTCGTACTCCGCGTTCAACATGATC : 3165530 vulgar: gi|383857773|ref|XP_003704378.1| 132 353 . KQ414646.1 3164391 3165530 + 460 M 88 264 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 29 87 G 1 0 M 38 114 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164392 3165530 460 + . gene_id 2 ; sequence gi|383857773|ref|XP_003704378.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3164392 3164657 . + . KQ414646.1 exonerate:protein2genome:local exon 3164392 3164657 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164658 3164659 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164658 3164982 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3164981 3164982 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164983 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164983 3165184 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3165185 3165186 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165185 3165264 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3165263 3165264 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165265 3165420 . + . KQ414646.1 exonerate:protein2genome:local exon 3165265 3165420 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165421 3165422 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165421 3165494 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3165493 3165494 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165495 3165530 . + . KQ414646.1 exonerate:protein2genome:local exon 3165495 3165530 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164392 3165530 460 + . alignment_id 2 ; Query gi|383857773|ref|XP_003704378.1| ; Align 3164392 133 264 ; Align 3164984 222 87 ; Align 3165071 252 114 ; Align 3165265 290 156 ; Align 3165495 342 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857773|ref|XP_003704378.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 302 Query range: 220 -> 353 Target range: 3158452 -> 3159002 221 : ArgPheAlaLysMetIleAsnGluGluPheLysMetValIleValValGlnPheTh : 239 ||||||:!!|||! !:!:|||||||||||||||:!!:!!:!::!! !|||||| ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3158453 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3158507 240 : rValThrThrMetIleValCysPheAsnLeuTyrLeuLeuLeuThrThrGluAsnM : 258 !:!!!:!! ! !:!::!!||||||||||||||| ! !:!!||| ! !!.| sIleSerMetSerValIleCysPheAsnLeuTyr---ArgMetThrGlnIleLysM 3158508 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTAC---CGAATGACACAGATCAAAA : 3158561 259 : etAsnThrLysPheLeuIleValValLeuTyrThrCysSerMetLeuThrGlnIle : 276 ||:!:|||||||||::: ::::!!||||||:!!! !!!!! :!!||||||||| etAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 3158562 : TGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 3158615 277 : PheIleTyrCysTrpTyrGlyThrLysValLysMetLysSerLeuGluValSer{A : 295 ||| !|||||||||||||||!.!:!!|||||| ||| ! !.!. ! {| PheTyrTyrCysTrpTyrGlyAsnGluValLysAspLysValAspHisCysHis{A 3158616 : TTTTACTATTGTTGGTACGGCAACGAAGTGAAAGATAAGGTTGATCATTGTcac{g : 3158672 296 : } >>>> Target Intron 1 >>>> {sp}MetValPheArgThrAspTrpM : 303 } 80 bp {||}|||:!!|||!.!!:!||||||! }-+ +-{sp}MetIlePheHisSerAspTrpT 3158673 : }at.........................at{AC}ATGATATTTCACAGCGACTGGA : 3158776 304 : etPhePheSerLysAspValLysArgIleLeuTyrValIleMetArgArgAlaAsn : 321 !! !!!.!:!!!.:!!|||! ||| !|||! :!!!!:|||||||||||| hrSerLeuAsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaVal 3158777 : CGTCTTTGAACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTG : 3158830 322 : ValSerIleGluPheArgSerAlaHisValValSerMetAsnLeuGluAlaPheVa : 340 ! !!|||||||||! !||| !||||||||||||:!!|||||||||:!!|||:! ArgProIleGluPheThrSerIleHisValValSerValAsnLeuGluSerPheMe 3158831 : AGGCCAATAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCAT : 3158887 341 : lAsn >>>> Target Intron 2 >>>> LeuLeuLysThrSerTyrSerAl : 349 ! 74 bp :!!:!!||||||:!!|||||||| tAla++ ++ValIleLysThrAlaTyrSerAl 3158888 : GGCAgt.........................agGTAATAAAAACTGCGTACTCCGC : 3158988 350 : aTyrAsnValLeu : 353 |!:!|||:!!:!! aPheAsnMetIle 3158989 : GTTCAACATGATC : 3159002 vulgar: gi|383857773|ref|XP_003704378.1| 220 353 . KQ414646.1 3158452 3159002 + 302 M 30 90 G 1 0 M 43 129 S 0 1 5 0 2 I 0 76 3 0 2 S 1 2 M 46 138 5 0 2 I 0 70 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158453 3159002 302 + . gene_id 3 ; sequence gi|383857773|ref|XP_003704378.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3158453 3158672 . + . KQ414646.1 exonerate:protein2genome:local exon 3158453 3158672 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3158673 3158674 . + . intron_id 1 ; splice_site "at" KQ414646.1 exonerate:protein2genome:local intron 3158673 3158752 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3158751 3158752 . + . intron_id 0 ; splice_site "AT" KQ414646.1 exonerate:protein2genome:local cds 3158753 3158892 . + . KQ414646.1 exonerate:protein2genome:local exon 3158753 3158892 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158893 3158894 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158893 3158966 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3158965 3158966 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158967 3159002 . + . KQ414646.1 exonerate:protein2genome:local exon 3158967 3159002 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3158453 3159002 302 + . alignment_id 3 ; Query gi|383857773|ref|XP_003704378.1| ; Align 3158453 221 90 ; Align 3158543 252 129 ; Align 3158755 296 138 ; Align 3158967 342 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857773|ref|XP_003704378.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 235 Query range: 0 -> 105 Target range: 3149059 -> 3149374 1 : MetCysGlyCysTrpArgProArgSerTrpAlaSerThrTyrLysLysLeuLeuTy : 19 !!:|||||||||||||||||| !!|||!! !!!!||| ! ||| ! !|| IleCysGlyCysTrpArgProCysSerCysArgThrThrArgAlaLysAlaAlaTy 3149060 : ATCTGCGGATGCTGGAGGCCGTGCTCGTGCCGAACGACACGCGCCAAGGCCGCGTA : 3149114 20 : rThrValTyrThrValPheValPheThrLeuLeuAsnThrValMetValLeuGlnI : 38 |! !|||||||||:!!|||||| ! !||||||:!!!:! !! :!: |||. rIleValTyrThrMetPheValValLeuLeuLeuHisSerPheCysIleSerGlnP 3149115 : CATCGTTTACACGATGTTCGTGGTACTTTTATTGCACAGCTTCTGCATctcgcaat : 3149171 39 : leMetAspLeuValLeuAsnValGluAsnGlnAspGluLeuSerGluGlyPheTyr : 56 .....::::::::!||||||:!!..!!.. !|||||||||||||||.!!|||||| hePheAsnValIleLeuAsnLeuArgThrAlaAspGluLeuSerGluSerPheTyr 3149172 : ttttcaacgtgatACTGAACTTGAGAACGGCGGACGAGCTGAGCGAGAGTTTCTAC : 3149225 57 : MetMetLeuThrMetPheValAlaCysHisLysMetTyrSerIleLeuThrSerLy : 75 |||.!.:!!.!! !!:!!:!!||| !|||!!: !!!!:!:||||||!:! ! MetPheIleAlaSerValLeuSerCysCysLysIleValThrLeuLeuThrAsnHi 3149226 : ATGTTCATCGCGTCCGTTCTGTCCTGCTGCAAGATCGTCACGCTGCTGACGAACCA : 3149282 76 : sLysAsnIleValAlaLeuThrArgIleLeuGluAsnGluProPheLeuProGluA : 94 !!:!|||! ! !||| !|||! !||||||.!.||||||! ! !|||! !! sGlySerIleGluIleLeuArgArgArgLeuGluGluGluProCysLysProValS 3149283 : CGGAAGCATCGAGATCCTCCGGAGGAGACTGGAGGAGGAGCCGTGTAAACCTGTGA : 3149339 95 : snGluGluGluValAspIleArgLysLysPheAsp : 105 :!! ||||||!.!! !|||!:!!..||||||||| erAlaGluGluAlaValIleGlnSerLysPheAsp 3149340 : GCGCCGAGGAGGCTGTCATACAGAGTAAATTCGAC : 3149374 vulgar: gi|383857773|ref|XP_003704378.1| 0 105 . KQ414646.1 3149059 3149374 + 235 M 105 315 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3149060 3149374 235 + . gene_id 4 ; sequence gi|383857773|ref|XP_003704378.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3149060 3149374 . + . KQ414646.1 exonerate:protein2genome:local exon 3149060 3149374 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3149060 3149374 235 + . alignment_id 4 ; Query gi|383857773|ref|XP_003704378.1| ; Align 3149060 1 315 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857773|ref|XP_003704378.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 0 -> 105 Target range: 3159656 -> 3159971 1 : MetCysGlyCysTrpArgProArgSerTrpAlaSerThrTyrLysLysLeuLeuTy : 19 !!:||||||! ! ||||||! !|||||| !||| !! !||||||||||| IleCysGlyTyrIleArgProThrSerTrpLysSerProGlyLeuLysLeuLeuTy 3159657 : ATTTGCGGCTACATAAGGCCAACATCGTGGAAGTCACCGGGGCTAAAGCTTCTCTA : 3159711 20 : rThrValTyrThrValPheValPheThrLeuLeuAsnThrValMetValLeuGlnI : 38 |!.!|||:!!|||||| !||| ! ..!:!!|||!:!||| !!.!.||| !|||| rAsnValHisThrValThrValValValValLeuSerThrPhePheValAlaGlnI 3159712 : TAACGTACACACGGTTACTGTAGTGGTAGTTCTTAGCACGTTTTTCGTCGCCCAGA : 3159768 39 : leMetAspLeuValLeuAsnValGluAsnGlnAspGluLeuSerGluGlyPheTyr : 56 ||:!:|||::::::...|||||||||||||||||||||!!!|||!!:..!|||! ! leLeuAspIleIlePheAsnValGluAsnGlnAspGluPheSerAspAsnPheCys 3159769 : TATTggacattattttcaacgtgGAGAATCAAGACGAGTTTAGCGACAATTTCTGC : 3159822 57 : MetMetLeuThrMetPheValAlaCysHisLysMetTyrSerIleLeuThrSerLy : 75 !!:! !! ! !:!!.!. !::! ! |||:!!||||||:!:|||! !.!!:: IleThrCysCysValMetAsnSerLeuGlyLysLeuTyrSerLeuLeuIleGlyAr 3159823 : ATAACGTGCTGCGTGATGAACAGCCTTGGAAAGTTGTACAGCTTGCTGATAGGACG : 3159879 76 : sLysAsnIleValAlaLeuThrArgIleLeuGluAsnGluProPheLeuProGluA : 94 !:!!! ||| ! !|||! ! ! |||:!!!:!!!:|||.!! !||| !: gGluMetIleGlnAsnLeuIleAspSerLeuGlnSerAspProLeuArgProLeuA 3159880 : AGAAATGATCCAAAATTTAATAGACTCGCTACAAAGTGACCCTCTTAGGCCGTTGG : 3159936 95 : snGluGluGluValAspIleArgLysLysPheAsp : 105 !!|||! !||| !!!:|||||| !!:! !!!: spGluValGluAsnGluIleArgLeuArgHisGlu 3159937 : ACGAAGTGGAGAATGAAATTCGATTGAGACACGAG : 3159971 vulgar: gi|383857773|ref|XP_003704378.1| 0 105 . KQ414646.1 3159656 3159971 + 205 M 105 315 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3159657 3159971 205 + . gene_id 5 ; sequence gi|383857773|ref|XP_003704378.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3159657 3159971 . + . KQ414646.1 exonerate:protein2genome:local exon 3159657 3159971 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3159657 3159971 205 + . alignment_id 5 ; Query gi|383857773|ref|XP_003704378.1| ; Align 3159657 1 315 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857773|ref|XP_003704378.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 2 -> 106 Target range: 3179655 -> 3179964 3 : GlyCysTrpArgProArgSerTrpAlaSerThrTyrLysLysLeuLeuTyrThrVa : 21 |||||||||||||||! !||||||:!!||||||||||||! ! !:!!|||!.!|| GlyCysTrpArgProIleSerTrpSerSerThrTyrLysThrAlaIleTyrAsnVa 3179656 : GGCTGTTGGAGACCGATCTCGTGGTCTTCGACGTACAAAACGGCAATCTACAATGT : 3179710 22 : lTyrThrValPheValPheThrLeuLeuAsnThrValMetValLeuGlnIleMetA : 40 ||||||||||.!!|||!!.! !:!! ! !!.! !!||||||! !|||.!! . lTyrThrValLeuValLeuIleMetGlyValAsnPheMetValSerGlnPheGlyS 3179711 : CTACACCGTTCTCGTATTAATCATGGGTGTTAATTTCATGGTTTCGCAATTTGGCA : 3179767 41 : spLeuValLeuAsnValGluAsnGlnAspGluLeuSerGluGlyPheTyrMetMet : 58 .!:!! !!!!.!:!!|||!.! !.!.!!:!!! !!!: ! !|||!!: erMet---PheThrIleGluThrValGlnAspPheValAspLeuThrTyrIleCys 3179768 : GCATG---TTCACCATAGAAACCGTACAAGATTTCGTCGACCTTACTTACATATGC : 3179818 59 : LeuThrMetPheValAlaCysHisLysMetTyrSerIleLeuThrSerLysLysAs : 77 :!!:!!:!!||||||!.!||| !|||:!!! !:!:!::!! !! !::!|||:! ValSerValPheValGlyCysCysLysLeuSerAsnValValPheTyrArgLysAs 3179819 : GTCTCCGTGTTCGTCGGTTGTTGCAAGCTGTCAAACGTGGTGTTCTATCGGAAAGA : 3179875 78 : nIleValAlaLeuThrArgIleLeuGluAsnGluProPheLeuProGluAsnGluG : 96 !|||:!!! !|||! !!.!|||!!! !.!.!!:|||! ! ! !..!|||:!!| pIleIleAspLeuMetAsnIlePheMetGluAspProCysAlaCysSerAsnLysG 3179876 : TATCATAGACCTGATGAACATCTTCATGGAGGATCCTTGTGCATGTTCGAACAAGG : 3179932 97 : luGluValAspIleArgLysLysPheAspAsp : 106 |||||! !.!.:!:!:! !!:!!:!|||||| luGluAspGlnValGlnAlaArgTyrAspAsp 3179933 : AGGAGGACCAGGTGCAAGCGAGATACGACGAT : 3179964 vulgar: gi|383857773|ref|XP_003704378.1| 2 106 . KQ414646.1 3179655 3179964 + 178 M 39 117 G 1 0 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3179656 3179964 178 + . gene_id 6 ; sequence gi|383857773|ref|XP_003704378.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3179656 3179964 . + . KQ414646.1 exonerate:protein2genome:local exon 3179656 3179964 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3179656 3179964 178 + . alignment_id 6 ; Query gi|383857773|ref|XP_003704378.1| ; Align 3179656 3 117 ; Align 3179773 43 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857773|ref|XP_003704378.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 220 -> 291 Target range: 3150601 -> 3150814 221 : ArgPheAlaLysMetIleAsnGluGluPheLysMetValIleValValGlnPheTh : 239 |||!:!!.! ! !!!:.!.|||:!!|||!:! !:!!|||! !||||||.!! ArgTyrValPheThrMetGlnGluLysPheArgTrpIleIleGlyValGlnLeuLe 3150602 : AGGTACGTTTTCACGATGCAAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTT : 3150656 240 : rValThrThrMetIleValCysPheAsnLeuTyrLeuLeuLeuThrThrGluAsnM : 258 ! !!:!|||:!!:!!|||||||||! !|||||| !||| !!.!||| ! uSerSerThrLeuValValCysPheIleLeuTyrGluLeuAlaAsnThrProProI 3150657 : ATCGAGCACGCTGGTAGTGTGTTTCATCCTGTACGAATTGGCGAACACGCCTCCAA : 3150713 259 : etAsnThrLysPheLeuIleValValLeuTyrThrCysSerMetLeuThrGlnIle : 276 !:!:!:!!|||!:!||| ! !!||||||||| !..!!!!|||:!!||||||||| leSerSerLysTyrLeuGlnPheValLeuTyrLeuAlaCysMetMetThrGlnIle 3150714 : TCAGCTCCAAGTACCTGCAATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATC : 3150767 277 : PheIleTyrCysTrpTyrGlyThrLysValLysMetLysSerLeu : 291 |||.!!||||||||||||||| !:!!:!!|||:!!||| !||| PhePheTyrCysTrpTyrGlyGluGlnLeuLysLeuLysValLeu 3150768 : TTCTTTTACTGCTGGTACGGCGAGCAGTTGAAACTGAAGGTACTG : 3150814 vulgar: gi|383857773|ref|XP_003704378.1| 220 291 . KQ414646.1 3150601 3150814 + 174 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150602 3150814 174 + . gene_id 7 ; sequence gi|383857773|ref|XP_003704378.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150602 3150814 . + . KQ414646.1 exonerate:protein2genome:local exon 3150602 3150814 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150602 3150814 174 + . alignment_id 7 ; Query gi|383857773|ref|XP_003704378.1| ; Align 3150602 221 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857773|ref|XP_003704378.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 136 -> 283 Target range: 3153198 -> 3153639 137 : GlnLysLeuProPheArgMetTrpLeuProGlnLysTyrLeuSerLeuThrValLe : 155 :::|||... ||||||:::||||||||| ! ! ! !!!!! ! !!|||!! ArgLysPheLysPheArgValTrpLeuProTyrAspThrThrThrGlnProValPh 3153199 : agaaaattcaaatttcgcgtCTGGTTACCTTACGACACTACTACACAACCTGTCTT : 3153253 156 : uValIleAlaAsnIleGlnGlnAlaMetSerLeuIleThrGlyAlaLeuValHisI : 174 !..!:!: ! !! !|||||| !:!:!!! ! !.!!!.! !:!!:!!: eThrLeuIleTyrCysGlnGlnIleValCysThrTrpTyrSerValAsnIleAsnV 3153254 : CACTCTGATCTACTGTCAACAGATCGTCTGCACGTGGTACAGCGTGAATATTAACG : 3153310 175 : leGlyCysAspAsnLeuIleTrpGlyLeuLeuLeuHisThrCysSerGlnIleGlu : 192 !! !|||||| !|||.!! ! ||||||:!!:!!!!.! !|||||| :!!..! alIleCysAspCysLeuPheSerGlyLeuMetIleGlnIleCysSerIleLeuArg 3153311 : TCATTTGCGACTGCCTGTTCAGCGGCCTGATGATACAGATTTGCTCAATCTTACGG : 3153364 193 : IleLeuGluTyrArgLeuArgAlaIleLysProGlyGluSerGlnSerAlaLysSe : 211 ! :!!:!! !! !! !||| ! ! !! !! ! ! ! !!! !! !|| LysMetLysProThrArgArgAsnCysValLeuValThrIleIleArgTyrThrSe 3153365 : AAGATGAAACCTACTCGGCGAAACTGTGTGCTCGTCACCATAATCAGATATACAAG : 3153421 212 : rSerAlaArgTyrHisAspLeuValTyrArg<->PheAlaLysMetIleAsnGluG : 229 |..!:!!||| ... ||| ! !!.|||:!!!!::!:||||||: rGlnSerArgGlnGluIleLysArgTyrVal***LeuAlaGlnIleValAsnGluL 3153422 : CCAGTCTCGacaagaaattaaacgatacgTTTGATTGGCGCAAATAGTGAACGAGA : 3153478 230 : luPheLysMetValIleValValGlnPheThrValThrThrMetIleValCysPhe : 247 !!.!! !! ||| !:!!||||||.!!:!!!:!||| :!!|||||| ysLeuGlyAsnValSerSerIleGlnPheAlaIleSerThrGlyAlaIleCysPhe 3153479 : AGCTTGGAAATGTCTCGAGTATACAGTTCGCGATAAGCACAGGAGCGATATGCTTC : 3153532 248 : AsnLeuTyrLeuLeuLeuThrThrGluAsnMetAsnThrLysPheLeuIleValVa : 266 |||||||||! !:!!! !..!! !||| :!:..! !!||||||:!! !!.!:! AsnLeuTyrArgMetSerValIleGlu---LeuGlyProLysPheValGluAlaLe 3153533 : AATCTCTATCGAATGTCGGTGATAGAA---CTCGGTCCAAAGTTTGTGGAAGCGTT : 3153586 267 : lLeuTyrThrCysSerMetLeuThrGlnIlePheIleTyrCysTrpTyrGly : 283 ! ! !||| !!!:!:|||.!!||||||||| !||||||||||||||| uThrIleThrValCysLeuLeuAlaGlnIlePheTyrTyrCysTrpTyrGly 3153587 : AACTATCACAGTATGCTTACTCGCGCAGATATTTTACTATTGTTGGTAcggt : 3153639 vulgar: gi|383857773|ref|XP_003704378.1| 136 283 . KQ414646.1 3153198 3153639 + 167 M 85 255 G 0 3 M 35 105 G 1 0 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153199 3153639 167 + . gene_id 8 ; sequence gi|383857773|ref|XP_003704378.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153199 3153639 . + . KQ414646.1 exonerate:protein2genome:local exon 3153199 3153639 . + . insertions 3 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3153199 3153639 167 + . alignment_id 8 ; Query gi|383857773|ref|XP_003704378.1| ; Align 3153199 137 255 ; Align 3153457 222 105 ; Align 3153562 258 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857773|ref|XP_003704378.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 216 -> 289 Target range: 3178372 -> 3178591 217 : AspLeuValTyrArgPheAlaLysMetIleAsnGluGluPheLysMetValIleVa : 235 :::...::: ||||||.!!:!!! !:!:||| ! !|||:!! :!!||| ! AsnPheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePh 3178373 : aatttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTT : 3178427 236 : lValGlnPheThrValThrThrMetIleValCysPheAsnLeuTyrLeuLeuLeuT : 254 !:!!||||||:!!:!!!:!:!!! !:!::!!|||!!.!:!:!!||| !:!!! !| eLeuGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerT 3178428 : CCTGCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGA : 3178484 255 : hrThrGluAsnMetAsnThrLysPheLeuIleValValLeuTyrThrCysSerMet : 272 ||! !.!. .!.!:!! !!!.|||:!! !!.!! !||| !|||!!!||| hrIleAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMet 3178485 : CGATTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATG : 3178538 273 : LeuThrGlnIlePheIleTyrCysTrpTyrGlyThrLysValLysMetLys : 289 |||||||||:!:!:!:!!|||||||||!:!|||!.!:!!|||! !:!!||| LeuThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys 3178539 : CTCACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: gi|383857773|ref|XP_003704378.1| 216 289 . KQ414646.1 3178372 3178591 + 158 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178373 3178591 158 + . gene_id 9 ; sequence gi|383857773|ref|XP_003704378.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178373 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178373 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178373 3178591 158 + . alignment_id 9 ; Query gi|383857773|ref|XP_003704378.1| ; Align 3178373 217 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857773|ref|XP_003704378.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 131 -> 221 Target range: 3157860 -> 3158130 132 : LeuAsnMetGlyGlyGlnLysLeuProPheArgMetTrpLeuProGlnLysTyrLe : 150 :!!:!!.!..!!..!::!|||||| !|||||| |||:!!||| ! ! |||! IleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrAspTyrSe 3157861 : ATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACGATTACTC : 3157915 151 : uSerLeuThrValLeuValIleAlaAsnIleGlnGlnAlaMetSerLeuIleThrG : 169 ! !! ! !!:!!!!!:!!:!!.!!::!:!!!!.||||||!!::!!! !! ! ! rProAlaProIlePheIleLeuThrSerValHisGlnAlaIleAlaSerThrIleC 3157916 : CCCTGCGCCCATTTTTATCCTTACCTCCGTCCATCAAGCTATAGCCTCGACGATAT : 3157972 170 : lyAlaLeuValHisIleGlyCysAspAsnLeuIleTrpGlyLeuLeuLeuHisThr : 187 !!..! ! ! !:!! ! |||!.!||| ! |||||||||:!!:!!! ! ysCysThrSerThrValThrValAspThrLeuTyrThrGlyLeuLeuIleAsnIle 3157973 : GTTGCACTTCGACCGTCACTGTGGATACTCTATACACTGGCTTGTTGATTAATATC : 3158026 188 : CysSerGlnIleGluIleLeuGluTyrArgLeuArgAlaIleLysProGlyGluSe : 206 ! !!!!|||.!!||||||||||||:!!||||||||| !:!!||| !!! !:!!.. TyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysThrGluGlnAs 3158027 : TACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAACTGAGCAGGA : 3158083 207 : rGlnSerAlaLysSerSerAlaArgTyrHisAspLeuValTyrArg : 221 !.!.|||!.!|||..!!!!|||!:!:!!||||||! !:!!|||!:! pAspSerValLysGlnCysAlaGlnHisHisAspArgIleTyrGln 3158084 : TGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTATATACCAG : 3158130 vulgar: gi|383857773|ref|XP_003704378.1| 131 221 . KQ414646.1 3157860 3158130 + 154 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157861 3158130 154 + . gene_id 10 ; sequence gi|383857773|ref|XP_003704378.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3157861 3158130 . + . KQ414646.1 exonerate:protein2genome:local exon 3157861 3158130 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157861 3158130 154 + . alignment_id 10 ; Query gi|383857773|ref|XP_003704378.1| ; Align 3157861 132 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857773|ref|XP_003704378.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 221 -> 289 Target range: 3180463 -> 3180667 222 : PheAlaLysMetIleAsnGluGluPheLysMetValIleValValGlnPheThrVa : 240 !!.|||:!!!!:!!:|||!!:....!.:!!:!!..!!!: !!!.!|||||| !! LeuAlaGluIleMetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePheGl 3180464 : TTAGCTGAAATAATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTTCGG : 3180518 241 : lThrThrMetIleValCysPheAsnLeuTyrLeuLeuLeuThrThrGluAsnMetA : 259 !!:! !|||:!::!!|||.!.!:!||| !! !||||||!.!.!!!!:! !:!:! ySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleLeuS 3180519 : AAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTCTCA : 3180575 260 : snThrLysPheLeuIleValValLeuTyrThrCysSerMetLeuThrGlnIlePhe : 277 :!|||:!!|||||| ..!:::...||| |||:::||| !|||! !||| erThrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPhe 3180576 : GCACCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGCTTT : 3180629 278 : IleTyrCysTrpTyrGlyThrLysValLysMetLys : 289 :!!|||||||||||||||!.!:!!|||!:!! !||| LeuTyrCysTrpTyrGlyAsnGluValArgThrLys 3180630 : CTTTACTGTTGGTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: gi|383857773|ref|XP_003704378.1| 221 289 . KQ414646.1 3180463 3180667 + 148 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180464 3180667 148 + . gene_id 11 ; sequence gi|383857773|ref|XP_003704378.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180464 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180464 3180667 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180464 3180667 148 + . alignment_id 11 ; Query gi|383857773|ref|XP_003704378.1| ; Align 3180464 222 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857773|ref|XP_003704378.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 459 Query range: 131 -> 353 Target range: 1946843 -> 1945701 132 : LeuAsnMetGlyGlyGlnLysLeuProPheArgMetTrpLeuProGlnLysTyrLe : 150 :!!:!!.!..!!..!::!|||||| !|||||| |||:!!||| ! ! |||! IleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrAspTyrSe 1946843 : ATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACGATTACTC : 1946789 151 : uSerLeuThrValLeuValIleAlaAsnIleGlnGlnAlaMetSerLeuIleThrG : 169 ! !! ! !!:!!!!!:!!:!!.!! !:!!!!.||||||!!::!! !! ! ! rProAlaProIlePheIleLeuThrPheValHisGlnAlaIleAlaAlaThrIleC 1946788 : CCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCGACGATAT : 1946732 170 : lyAlaLeuValHisIleGlyCysAspAsnLeuIleTrpGlyLeuLeuLeuHisThr : 187 !!..! ! ! !:!! ! |||::!||| ! |||||||||:!!:!!! ! ysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLeuIleAsnIle 1946731 : GTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTGATTAATATC : 1946678 188 : CysSerGlnIleGluIleLeuGluTyrArgLeuArgAlaIleLysProGlyGluSe : 206 ! !!!!|||.!!||||||||||||:!!||||||||| !:!!||| !!! !:!!.. TyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysThrGluGlnAs 1946677 : TACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAACTGAGCAGGA : 1946621 207 : rGlnSerAlaLysSerSerAlaArgTyrHisAspLeuValTyr{Ar} >>>> Ta : 221 !.!.|||!.!|||..!!!!|||!:!:!!||||||! !:!!|||{!:} pAspSerValLysGlnCysAlaGlnHisHisAspArgIleTyr{Gl}++ 1946620 : TGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTATATAC{CA}gt....... : 1946572 222 : rget Intron 1 >>>> {g}PheAlaLysMetIleAsnGluGluPheLysMet : 232 325 bp {!}|||:!!|||! !:!:|||||||||||||||:!! ++{n}PheSerLysLysValAsnGluGluPheLysLeu 1946571 : ..................ag{A}TTTTCGAAAAAGGTGAACGAAGAATTCAAACTG : 1946218 233 : ValIleValValGlnPheThrValThrThrMetIleValCysPheAsnLeuTyrLe : 251 :!!:!::!! !|||||| !:!!!:!! ! !:!::!!||||||||||||||| IleLeuIleSerGlnPheCysIleSerMetSerValIleCysPheAsnLeuTyr-- 1946217 : ATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTTCAATCTTTAC-- : 1946161 252 : uLeuLeuThrThrGluAsnMetAsnThrLysPheLeuIleValValLeuTyrThrC : 270 ! !:!!||| ! !!.|||:!:|||||||||::: ::::!!||||||:!!! -ArgMetThrGlnIleLysMetAspThrLysPheValGluIleIleLeuTyrSerP 1946160 : -CGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaatcaTACTCTACTCTT : 1946107 271 : ysSerMetLeuThrGlnIlePheIleTyrCysTrpTyrGlyThrLysValLysMet : 288 !!!!! :!!|||||||||||| !|||||||||||||||!.!:!!|||||| heCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGluValLysAsp 1946106 : TCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGGCAACGAAGTGAAAGAT : 1946053 289 : Lys >>>> Target Intron 2 >>>> SerLeuGluValSerAspMetVal : 297 ||| 80 bp ||||||:!!:!! !! !!|||:!! Lys++ ++SerLeuGlnLeuProTyrMetIle 1946052 : AAGgt.........................agAGCCTCCAACTTCCATACATGATA : 1945946 298 : PheArgThrAspTrpMetPhePheSerLysAspValLysArgIleLeuTyrValIl : 316 |||!.!!:!||||||! !! !!!.!:!!!.:!!|||! ||| !|||! :!!!! PheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArgAlaLeuLeuIleMe 1945945 : TTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGAGCACTTTTAATCAT : 1945889 317 : eMetArgArgAlaAsnValSerIleGluPheArgSerAlaHisValValSerMetA : 335 :|||||||||||| ! !!|||||||||! !||| !||||||||||||:!!| tMetArgArgAlaValArgProIleGluPheThrSerIleHisValValSerValA 1945888 : GATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCACGTTGTCTCTGTGA : 1945832 336 : snLeuGluAlaPheValAsn >>>> Target Intron 3 >>>> LeuLeuL : 344 ||||||||:!!|||:!! 74 bp :!!:!!| snLeuGluSerPheMetAla++ ++ValIleL 1945831 : ATCTCGAATCCTTCATGGCAgt.........................agGTAATAA : 1945731 345 : ysThrSerTyrSerAlaTyrAsnValLeu : 353 |||||||||||||||||!:!|||:!!:!! ysThrSerTyrSerAlaPheAsnMetIle 1945730 : AAACTTCGTACTCCGCGTTCAACATGATC : 1945702 vulgar: gi|383857773|ref|XP_003704378.1| 131 353 . KQ414661.1 1946843 1945701 - 459 M 89 267 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 29 87 G 1 0 M 38 114 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945702 1946843 459 - . gene_id 1 ; sequence gi|383857773|ref|XP_003704378.1| ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1946575 1946843 . - . KQ414661.1 exonerate:protein2genome:local exon 1946575 1946843 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946573 1946574 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946250 1946574 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1946250 1946251 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946048 1946249 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946249 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local splice5 1946046 1946047 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945968 1946047 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1945968 1945969 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945812 1945967 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1945967 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 3 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 3 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 2 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945702 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945702 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945702 1946843 459 - . alignment_id 1 ; Query gi|383857773|ref|XP_003704378.1| ; Align 1946844 132 267 ; Align 1946249 222 87 ; Align 1946162 252 114 ; Align 1945968 290 156 ; Align 1945738 342 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857757|ref|XP_003704370.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 501 Query range: 68 -> 319 Target range: 1946921 -> 1945689 69 : PheLeuArgSerSerSerLysAlaTyrThrAlaIleLeuMetSerCysLeuSerCy : 87 |||!!!|||!!!!:!!!!! !.!||| !::::::|||::: !! !! PhePheArgTrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePh 1946921 : TTTTTTAGATGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTT : 1946867 88 : sIleIleIleThrValPheValIleGlyPheThrLysArgMetLeuIleCysArgI : 106 !||| !:!:! ! !.!!:!!|||! !|||!:!!!.|||! |||!!:! !||| eIleTyrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgA 1946866 : TATATACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAG : 1946810 107 : leTrpValProTyrAsnTyrSerSerThrSerLeuTyrIleValThrSerMetTyr : 124 !|||:!!||||||:!!|||||| !!.!! !!:!!!:!|||:!!|||! !:!::!! laTrpIleProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHis 1946809 : CATGGATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCAT : 1946756 125 : GluGlyMetGlyAlaCysTyrGlyIleSerAlaSerSerAlaCysGluCysLeuTy : 143 :!!!.!!!:!.!||| !! !!!!:!!||| !.!! !!:! !||||| GlnAlaIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTy 1946755 : CAAGCTATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATA : 1946699 144 : rThrGlyLeuLeuLeuHisIleCysCysGlnPheGluIleLeuGluHisArgPheA : 162 |||||||||||||:!!:!!|||! !|||||||||||||||||||||||||||.!.| rThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuA 1946698 : CACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAA : 1946642 163 : rgSerLeuAsnSerAsnProIleTyrThrAlaAsnHisCysAlaSerHisHisHis : 180 ||!:!:!!!!.!!!.!.! ! ! !!:!!!.!!!.!!.||||||..!|||||| !! rgAsnValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAsp 1946641 : GGAACGTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGAT : 1946588 181 : LeuIleTyr{Ly} >>>> Target Intron 1 >>>> {s}TyrAlaGluAl : 188 ! !||||||{:!} 325 bp {!}!:!:!!:!! ArgIleTyr{Gl}++ ++{n}PheSerLysLy 1946587 : CGTATATAC{CA}gt.........................ag{A}TTTTCGAAAAA : 1946239 189 : aValAsnGluGluPheArgGlyIleMetSerPheGlnPhePheSerSerMetSerI : 207 !|||||||||||||||!:! !|||:!!! !! !||||||! !! !|||||||||: sValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerV 1946238 : GGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGG : 1946182 208 : leLeuCysLeuThrIleTyrHisLeuAlaTyrAlaGluAsnSerAlaAlaPheMet : 225 !::!!|||!!!!.!:!!|||!..:!!.!! ! !:!!! ...... |||::: alIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheVal 1946181 : TGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtc : 1946128 226 : AlaThrGlyLeuTyrMetThrCysValLeuCysGlnMetPheTyrTyrCysPheTy : 244 !|||||| !|||..!:!! |||!!:||||||||||||!::|| GluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTy 1946127 : gaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTA : 1946071 245 : rGlyAspMetValLysThrLys >>>> Target Intron 2 >>>> SerIl : 253 ||||:!! |||||| !||| 80 bp |||:! rGlyAsnGluValLysAspLys++ ++SerLe 1946070 : CGGCAACGAAGTGAAAGATAAGgt.........................agAGCCT : 1945964 254 : eGluPheIleAspLysLeuPheGlnSerGlyTrpAlaSerTrpAsnGlySerSerL : 272 !:!!.!! ! !!! !:!!|||!!.|||! !|||.!!|||! !|||..!!:! !! uGlnLeuProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValT 1945963 : CCAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCA : 1945907 273 : ysMetValLeuLeuMetValMetArgArgSerArgThrProIleGluPheThrSer : 290 ! !.!||||||!!::!!|||||||||:!! !! !|||||||||||||||||| hrArgAlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheThrSer 1945906 : CCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGT : 1945853 291 : MetHisIleValThrLeuAsnLeuGluSerPheMetSer >>>> Target Int : 304 !!:|||:!!|||:!!:!!||||||||||||||||||:!! 74 bp IleHisValValSerValAsnLeuGluSerPheMetAla++ 1945852 : ATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt............... : 1945809 305 : ron 3 >>>> LeuLeuArgThrSerTyrSerAlaPheAsnLeuMetSerSerTh : 318 :!!:!!!:!|||||||||||||||||||||:!!!!:..!..!!: ++ValIleLysThrSerTyrSerAlaPheAsnMetIleGlnGlnSe 1945808 : ..........agGTAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAACAAAG : 1945695 319 : rArg : 319 !!:! rLys 1945694 : CAAA : 1945690 vulgar: gi|383857757|ref|XP_003704370.1| 68 319 . KQ414661.1 1946921 1945689 - 501 M 115 345 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 67 201 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945690 1946921 501 - . gene_id 1 ; sequence gi|383857757|ref|XP_003704370.1| ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1946575 1946921 . - . KQ414661.1 exonerate:protein2genome:local exon 1946575 1946921 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946573 1946574 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946250 1946574 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1946250 1946251 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946048 1946249 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946249 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946046 1946047 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945968 1946047 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1945968 1945969 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945812 1945967 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1945967 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 3 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 3 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 2 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945690 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945690 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945690 1946921 501 - . alignment_id 1 ; Query gi|383857757|ref|XP_003704370.1| ; Align 1946922 69 345 ; Align 1946249 185 201 ; Align 1945968 252 156 ; Align 1945738 304 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414667.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold102, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 343 -> 392 Target range: 801761 -> 801463 344 : MetGlyLysMetValArgLysAspLeuValLeuMetIleLeuArgSerArgValProC : 363 !!:|||!.. !! !:!!..!||| !:!!|||!!::!!|||||||||:!!|||| IleGlySerArgPheSerGlnSerLeuGlnIleMetMetMetArgSerArgIleProC 801761 : ATCGGTAGTCGTTTCTCTCAGAGTCTTCAGATCATGATGATGCGCTCGAGGATACCAT : 801704 364 : ysCysIleThrAlaSerGlyPhePheValValSerLeuGluThrTyrThrArg >>> : 381 || |||||||||:!! !|||!:! !:!!|||||||||!:!!:!:!!!:! ysLysIleThrAlaAlaLysPheTyrSerMetSerLeuGluSerPheSerLys++ 801703 : GCAAGATAACCGCCGCTAAATTCTACAGCATGTCCTTGGAGAGCTTCTCGAAGgt... : 801648 382 : > Target Intron 1 >>>> ValLeuSerThrAlaValSerTyrPheThrLeuL : 392 151 bp ||||||||||||:!! !!||||||||||||:!!| ++ValLeuSerThrSerPheSerTyrPheThrValL 801647 : ......................agGTACTCAGCACGTCTTTCTCCTACTTCACGGTCC : 801466 393 : eu : 392 || eu 801465 : TC : 801464 vulgar: gi|383857333|ref|XP_003704159.1| 343 392 . KQ414667.1 801761 801463 - 122 M 37 111 5 0 2 I 0 147 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414667.1 exonerate:protein2genome:local gene 801464 801761 122 - . gene_id 1 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation + KQ414667.1 exonerate:protein2genome:local cds 801651 801761 . - . KQ414667.1 exonerate:protein2genome:local exon 801651 801761 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 801649 801650 . - . intron_id 1 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801500 801650 . - . intron_id 1 KQ414667.1 exonerate:protein2genome:local splice3 801500 801501 . - . intron_id 0 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801464 801499 . - . KQ414667.1 exonerate:protein2genome:local exon 801464 801499 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local similarity 801464 801761 122 - . alignment_id 1 ; Query gi|383857333|ref|XP_003704159.1| ; Align 801762 344 111 ; Align 801500 381 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754615|ref|XP_012138734.1| PREDICTED: odorant receptor 24a-like [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 126 -> 206 Target range: 20562 -> 20325 127 : ThrIlePheLeuSerValThrLeuLeuProSerValLeuAspValIleLeuProLeuAsn : 146 .!!|||||||||!!!||| !!!!! !|||! !:!!||||||:!! ! !||||||||| AlaIlePheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsn 20562 : GCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAAC : 20505 147 : GluThrArgProArgGlnGlnLeuPheAsnValGluTyrLeuPhePheAspLysAspGlu : 166 :!!|||||| !||| ! :!!!:! !.! |||! !!::.!.||| !!::!! LysThrArgLysArgValPheValTyrProAla---TyrTyrTrpMetAspProGluGln 20504 : AAAACGAGAAAACGTGTGTTCGTTTATCCAGCC---TATTACTGGATGGATCCTGAGCAA : 20448 167 : TyrTyrTyrSerValTyrLeuGlnLeuSerTrpSerThrPheValIleValMetValIle : 186 |||||| ! !:!! :!!!!.:!!! !!:: !..!.!!:!!:!! !:!::!!.!! TyrTyrMetIleMetIleIleHisIleMetPheValValIleMetValCysValIlePhe 20447 : TACTACATGATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTC : 20388 187 : GlyPheValAspSerLeuTyrIleIleIleIleHisHisSerSerGlyLeuPheAlaVal : 206 !! ! !|||! ! !|||:!: ! !:!:!!.|||:!!!!!||||||!!.|||||| CysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaVal 20387 : TGTGCTTGCGACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTC : 20328 vulgar: gi|805754615|ref|XP_012138734.1| 126 206 . KQ414772.1 20562 20325 - 114 M 31 93 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20562 114 - . gene_id 1 ; sequence gi|805754615|ref|XP_012138734.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20562 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20562 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 20326 20562 114 - . alignment_id 1 ; Query gi|805754615|ref|XP_012138734.1| ; Align 20563 127 93 ; Align 20470 159 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754615|ref|XP_012138734.1| PREDICTED: odorant receptor 24a-like [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 103 -> 212 Target range: 14205 -> 13881 104 : LeuGluAspLeuThrLysLeuAlaSerThrValAlaArgIleTyrArgThrCysIleLeu : 123 |||.!.|||! !||| ! ! !!!! !:!!!.!!:! !! ! !..! ! :!! LeuAsnAspGlnThrValTyrPheThrTyrIleValLysTyrSerIleValAsnAlaIle 14205 : TTAAACGACCAAACTGTTTATTTTACGTACATTGTCAAATATTCGATAGTGAACGCGATC : 14148 124 : SerSerMetThrIlePheLeuSerValThrLeuLeuProSerValLeuAspValIleLeu : 143 !!!!:!:! !:!:|||:!!!!!..! !!:!! !||| !:!!||||||:!!:!!||| ValCysValIleLeuPheValThrThrProValThrProHisIleLeuAspIleLeuLeu 14147 : GTTTGTGTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATTTTGGACATTTTACTA : 14088 144 : ProLeuAsnGluThrArgProArgGlnGlnLeuPheAsnValGluTyrLeuPhePheAsp : 163 ||| !||||||:!!||| ! ! ! ! :!!!:! !.! |||! !||| !||| ProLysAsnGluSerArgAspValAlaTyrIleTyrProAla---TyrTyrPheThrAsp 14087 : CCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCC---TATTATTTCACCGAC : 14031 164 : LysAspGluTyrTyrTyrSerValTyrLeuGlnLeuSerTrpSerThrPheValIleVal : 183 :!! !!:!!||| !! ! !:!! ! !!!.:!!:!!! !! !.!!|||:!: !! GluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPhe 14030 : GAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTT : 13971 184 : MetValIleGlyPheValAspSerLeuTyrIleIleIleIleHisHisSerSerGlyLeu : 203 ||| !! ! ! !|||!!! !|||||| !:!!:!:!!.|||.!!!!!|||||| TyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeu 13970 : TACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTG : 13911 204 : PheAlaValCysGlyGluGlnIleLys : 212 !!.||||||! !||| :::|||::: LeuAlaValSerGly***LysIleArg 13910 : TTGGCCGTGTCCGGgtaaaaaattcga : 13882 vulgar: gi|805754615|ref|XP_012138734.1| 103 212 . KQ414772.1 14205 13881 - 111 M 54 162 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13882 14205 111 - . gene_id 2 ; sequence gi|805754615|ref|XP_012138734.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13882 14205 . - . KQ414772.1 exonerate:protein2genome:local exon 13882 14205 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 13882 14205 111 - . alignment_id 2 ; Query gi|805754615|ref|XP_012138734.1| ; Align 14206 104 162 ; Align 14044 159 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754615|ref|XP_012138734.1| PREDICTED: odorant receptor 24a-like [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 121 -> 171 Target range: 45961 -> 45814 122 : IleLeuSerSerMetThrIlePheLeuSerValThrLeuLeuProSerValLeuAspVal : 141 |||! !! !.!!:!!:!!:!:|||! !!!!!.! !!|||:!!|||! !:!!||||||:!! IleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeuAspLeu 45961 : ATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTGGACCTA : 45904 142 : IleLeuProLeuAsnGluThrArgProArgGlnGlnLeuPheAsnValGluTyrLeuPhe : 161 |||! !||||||||||||:!!||||||||| ! ! !!:!!!.!.! |||! !!:! IleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAla---TyrCysTyr 45903 : ATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCC---TACTGTTAC : 45847 162 : PheAspLysAspGluTyrTyrTyrSerVal : 171 |||:!! !|||!!:|||||||||! !||| PheAsnProAspAspTyrTyrTyrTyrVal 45846 : TTCAATCCGGACGACTACTATTATTACGTC : 45815 vulgar: gi|805754615|ref|XP_012138734.1| 121 171 . KQ414772.1 45961 45814 - 104 M 36 108 G 1 0 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45815 45961 104 - . gene_id 3 ; sequence gi|805754615|ref|XP_012138734.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45815 45961 . - . KQ414772.1 exonerate:protein2genome:local exon 45815 45961 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 45815 45961 104 - . alignment_id 3 ; Query gi|805754615|ref|XP_012138734.1| ; Align 45962 122 108 ; Align 45854 159 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754623|ref|XP_012138758.1| PREDICTED: odorant receptor 9a-like isoform X1 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 131 -> 213 Target range: 24419 -> 24176 132 : MetIlePheAsnTyrIleProLeuIleProProThrLeuAspIleIleLeuProArgAsn : 151 :!::!!|||!.! :!: !!:!!! !|||! !..!||||||:!!|||! !|||!:!||| ValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 24419 : GTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAAC : 24362 152 : GluSerArgProArgHisGlnLeuPheGlnValAsnTyrValPhePheAspAlaAspAsp : 171 ||||||||| ! ! ! :!!!:!! !.!|||||| ! !!|||! !!!:!!: GluSerArgGlyValGlyPheIleTyrProAlaAsnTyr---GlyValAspGluGluGlu 24361 : GAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTAC---GGCGTCGACGAAGAGGAG : 24305 172 : HisPheIlePheThrTyrLeuHisMetPheTrpAlaGlySerLeuThrValPheValVal : 191 |||!:! !!:! ! !||||||.!!! !.! !!!!:!!..! !!|||||| ! HisTyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyr 24304 : CATTACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTAC : 24245 192 : ValThrValAspSerLeuTyrMetLeuIleIleHisHisAlaSerGlyLeuPheAspVal : 211 :!!:!! !|||!!!:!!|||||| !|||:!:!!.||||||!!!||||||!!.:!!:!! IleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeu 24244 : ATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTC : 24185 212 : CysGly : 213 ! !||| SerGly 24184 : TCTGGG : 24177 vulgar: gi|805754623|ref|XP_012138758.1| 131 213 . KQ414772.1 24419 24176 - 131 M 33 99 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24177 24419 131 - . gene_id 1 ; sequence gi|805754623|ref|XP_012138758.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24177 24419 . - . KQ414772.1 exonerate:protein2genome:local exon 24177 24419 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 24177 24419 131 - . alignment_id 1 ; Query gi|805754623|ref|XP_012138758.1| ; Align 24420 132 99 ; Align 24321 166 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754623|ref|XP_012138758.1| PREDICTED: odorant receptor 9a-like isoform X1 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 122 -> 213 Target range: 38039 -> 37769 123 : TyrArgValThrLeuLeuThrPheThrMetIlePheAsnTyrIleProLeuIleProPro : 142 !:!! !|||!.! !||| !! ! !:!:||||||!.!! :!: !!:!!! |||! ! PheThrValAsnGlyLeuPheCysTyrValIlePheThrSerValAlaIleThrProArg 38039 : TTCACAGTAAACGGACTGTTTTGCTACGTTATATTCACCTCAGTGGCGATTACGCCTCGT : 37982 143 : ThrLeuAspIleIleLeuProArgAsnGluSerArgProArgHisGlnLeuPheGlnVal : 162 ..!||||||:!!|||! !|||!:!|||||||||||| ! ! !! :!!!:!! !.! ValLeuAspLeuIleSerProLysAsnGluSerArgGlyValAspPheIleTyrProAla 37981 : GTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTCATTTATCCTGCA : 37922 163 : AsnTyrValPhePheAspAlaAspAspHisPheIlePheThrTyrLeuHisMetPheTrp : 182 ||| ! !.!!|||! !!!:!!:|||!:! !.!! ! !||||||.!!!! ---TyrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHisMetLeuCys 37921 : ---TACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCACATGCTCTGC : 37865 183 : AlaGlySerLeuThrValPheValValValThrValAspSerLeuTyrMetLeuIleIle : 202 !.! !!!!:!!..! !!|||||| !:!!:!! !|||!!!:!!|||||| !|||:!! ValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMetSerIleVal 37864 : GTGATAACTGTAGTGTTTTTCGTGTACATCTCCTGTGACACGATCTACATGAGCATCGTT : 37805 203 : HisHisAlaSerGlyLeuPheAspValCysGly : 213 !!.||||||!!!||||||.!.:!!|||! !||| GlnHisAlaCysGlyLeuLeuAsnValSerGly 37804 : CAACACGCGTGCGGATTACTGAACGTCTCTGGG : 37770 vulgar: gi|805754623|ref|XP_012138758.1| 122 213 . KQ414772.1 38039 37769 - 130 M 40 120 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37770 38039 130 - . gene_id 2 ; sequence gi|805754623|ref|XP_012138758.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37770 38039 . - . KQ414772.1 exonerate:protein2genome:local exon 37770 38039 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 37770 38039 130 - . alignment_id 2 ; Query gi|805754623|ref|XP_012138758.1| ; Align 38040 123 120 ; Align 37920 164 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754623|ref|XP_012138758.1| PREDICTED: odorant receptor 9a-like isoform X1 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 129 Query range: 131 -> 213 Target range: 29598 -> 29355 132 : MetIlePheAsnTyrIleProLeuIleProProThrLeuAspIleIleLeuProArgAsn : 151 :!:||||||!.!! :!: !!:!!! !|||! !..!||||||:!!|||! !|||!:!||| ValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 29598 : GTTATATTCACCTCAGTGGCGATAACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAAC : 29541 152 : GluSerArgProArgHisGlnLeuPheGlnValAsnTyrValPhePheAspAlaAspAsp : 171 ||||||||| ! ! ! :!!!:!! !.! ||| ! !.!!|||! !!!:!!: GluSerArgGlyValGlyPheIleTyrProAla---TyrTyrGlyLeuAspGluGluGlu 29540 : GAATCGCGCGGAGTGGGCTTCATTTATCCTGCA---TACTACGGTCTTGACGAAGAGGAG : 29484 172 : HisPheIlePheThrTyrLeuHisMetPheTrpAlaGlySerLeuThrValPheValVal : 191 |||!:! !!:! ! !||||||.!!! !.! !!!!:!!..! !!|||||| ! HisTyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyr 29483 : CATTACTACTATCTGATGGGTCACATGCTTTCCGTGATAACCGTCGTGTTTTTCGTCTAC : 29424 192 : ValThrValAspSerLeuTyrMetLeuIleIleHisHisAlaSerGlyLeuPheAspVal : 211 :!!:!! !|||!!!:!!|||||| !:!!:!:!!.||||||!!!||||||!!.:!!||| IleSerCysAspThrIleTyrMetAsnValValGlnHisAlaCysGlyLeuLeuAsnVal 29423 : ATCTCCTGTGACACGATCTATATGAATGTCGTGCAACACGCGTGTGGATTATTGAACGTC : 29364 212 : CysGly : 213 ! !||| SerGly 29363 : TCTGGG : 29356 vulgar: gi|805754623|ref|XP_012138758.1| 131 213 . KQ414772.1 29598 29355 - 129 M 31 93 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29356 29598 129 - . gene_id 3 ; sequence gi|805754623|ref|XP_012138758.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29356 29598 . - . KQ414772.1 exonerate:protein2genome:local exon 29356 29598 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 29356 29598 129 - . alignment_id 3 ; Query gi|805754623|ref|XP_012138758.1| ; Align 29599 132 93 ; Align 29506 164 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754623|ref|XP_012138758.1| PREDICTED: odorant receptor 9a-like isoform X1 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 124 -> 213 Target range: 14157 -> 13893 125 : ValThrLeuLeuThrPheThrMetIlePheAsnTyrIleProLeuIleProProThrLeu : 144 |||!.! !:!!..!! !..!!!::!:||| !! |||:!!! !|||! !! !||| ValAsnAlaIleValCysValIleLeuPheValThrThrProValThrProHisIleLeu 14157 : GTGAACGCGATCGTTTGTGTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATTTTG : 14100 145 : AspIleIleLeuProArgAsnGluSerArgProArgHisGlnLeuPheGlnValAsnTyr : 164 ||||||:!!||||||!:!|||||||||||| ! ! ! :!!!:!! !!.! ||| AspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAla---Tyr 14099 : GACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCC---TAT : 14043 165 : ValPhePheAspAlaAspAspHisPheIlePheThrTyrLeuHisMetPheTrpAlaGly : 184 !||| !|||! ! !! ! :!! !:!:!:!! ! ! !|||||| ! !.! ! TyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIle 14042 : TATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATC : 13983 185 : SerLeuThrValPheValValValThrValAspSerLeuTyrMetLeuIleIleHisHis : 204 !:!!..! !!!:!||| !|||.!! !|||!!! !|||!!:! !:!!:!:!!.||| LeuValValPheTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHis 13982 : CTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACAC : 13923 205 : AlaSerGlyLeuPheAspValCysGly : 213 !.!!!!||||||!!.! !|||! !||| GlyCysGlyLeuLeuAlaValSerGly 13922 : GGCTGCGGATTGTTGGCCGTGTCCGGg : 13894 vulgar: gi|805754623|ref|XP_012138758.1| 124 213 . KQ414772.1 14157 13893 - 113 M 38 114 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13894 14157 113 - . gene_id 4 ; sequence gi|805754623|ref|XP_012138758.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13894 14157 . - . KQ414772.1 exonerate:protein2genome:local exon 13894 14157 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 13894 14157 113 - . alignment_id 4 ; Query gi|805754623|ref|XP_012138758.1| ; Align 14158 125 114 ; Align 14044 164 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754569|ref|XP_012138607.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 108 -> 162 Target range: 45002 -> 44742 109 : TyrAsnCysAsnTrpTyrLysIleProIleLysPheGlnLysLeuLeuCysThrMetIle : 128 |||.!....! !|||||||||!!:||| !|||.!!||| !||| ! !..! !:!! TyrGluAlaIleTrpTyrLysMetProProLysLeuGlnLeuLeuAspValValAlaLeu 45002 : TACGAGGCAATTTGGTATAAGATGCCACCTAAACTTCAGTTGCTAGACGTTGTAGCGCTT : 44945 129 : GlyArgCysAsnArgProCysIleLeuSerAlaGlyGlyLeuTyrAspMetAsnMetGlu : 148 !!!:! !! ! !||| !||||||!!!|||||||||||| :!::!!:!!.!. ArgLysSerLeuThrProProIleLeuThrAlaGlyGlyLeuMetArgLeuAspLeuAsn 44944 : AGAAAAAGCCTAACTCCTCCTATACTGACGGCGGGAGGGTTGATGCGGTTAGATTTGAAT : 44885 149 : AsnTyrGlyLys >>>> Target Intron 1 >>>> AlaValLysAlaCysMetS : 159 ::!!:!!.!:!! 98 bp :!!|||||||||:!:| SerPheAlaGln++ ++LeuLeuLysAlaCysValS 44884 : TCTTTCGCACAGgt.........................agctgCTGAAAGCTTGCGTCT : 44754 160 : erTyrPheThr : 162 |||||!:!||| erTyrTyrThr 44753 : CGTATTATACG : 44743 vulgar: gi|805754569|ref|XP_012138607.1| 108 162 . KQ414772.1 45002 44742 - 103 M 44 132 5 0 2 I 0 94 3 0 2 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 44743 45002 103 - . gene_id 1 ; sequence gi|805754569|ref|XP_012138607.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 44871 45002 . - . KQ414772.1 exonerate:protein2genome:local exon 44871 45002 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 44869 44870 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 44773 44870 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 44773 44774 . - . intron_id 0 ; splice_site "ag" KQ414772.1 exonerate:protein2genome:local cds 44743 44772 . - . KQ414772.1 exonerate:protein2genome:local exon 44743 44772 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 44743 45002 103 - . alignment_id 1 ; Query gi|805754569|ref|XP_012138607.1| ; Align 45003 109 132 ; Align 44773 153 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752323|ref|XP_012144879.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 80 -> 131 Target range: 1345564 -> 1345717 81 : SerAlaGlnLeuAlaGluLysIleTyrGlySerAsnTrpCysGluValProIleLy : 99 |||:!!:!!:!! !:!! !||| !|||||||||! !!!::!!||| !|| SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 100 : sPheGlnLysSerLeuCysPheMetIleAlaArgSerSerLysProCysIleLeuS : 118 |!:! !::!|||||| ||| ||||||||||||..!||||||! !|||! sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 119 : erAlaGlyGlyLeuTyrAspMetAsnMetGluAsnTyrGly : 131 !!|||||| !!!!|||! .!.::::!:|||!..!:!||| hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGly 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGC : 1345717 vulgar: gi|805752323|ref|XP_012144879.1| 80 131 . KQ414782.1 1345564 1345717 + 120 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345717 120 + . gene_id 1 ; sequence gi|805752323|ref|XP_012144879.1| ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345717 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345717 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345717 120 + . alignment_id 1 ; Query gi|805752323|ref|XP_012144879.1| ; Align 1345565 81 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754615|ref|XP_012138734.1| PREDICTED: odorant receptor 24a-like [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 126 -> 208 Target range: 26231 -> 25988 127 : ThrIlePheLeuSerValThrLeuLeuProSerValLeuAspValIleLeuProLeuAsn : 146 .!!:!!|||:!!!!!:!! !!!!!:!! !! !!:!!||||||:!!:!!:!!||||||||| AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsn 26231 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAAC : 26174 147 : GluThrArgProArgGlnGlnLeuPheAsnValGluTyrLeuPhePheAspLysAspGlu : 166 ||||||||| !!||| ! :!!!:! !.! |||! !||| !!|||:!!|||:!! GluThrArgAlaArgLeuPheValTyrProAla---TyrTyrPheValAspGluAspLys 26173 : GAGACGCGAGCACGGTTGTTCGTCTATCCAGCT---TACTATTTCGTCGACGAGGACAAA : 26117 167 : TyrTyrTyrSerValTyrLeuGlnLeuSerTrpSerThrPheValIleValMetValIle : 186 |||:!!|||! !:!! !!!.:!!! ! !..! ! :!!:!!:!! |||.!! TyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPhe 26116 : TATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTC : 26057 187 : GlyPheValAspSerLeuTyrIleIleIleIleHisHisSerSerGlyLeuPheAlaVal : 206 !! ! !|||:!! !|||:!: ! !:!:!!.|||:!!!!!||||||!!.|||:!! CysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 26056 : TGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 25997 207 : CysGly : 208 ...||| AlaGly 25996 : GCAGGG : 25989 vulgar: gi|805754615|ref|XP_012138734.1| 126 208 . LHQN01017803.1 26231 25988 - 124 M 31 93 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26231 124 - . gene_id 1 ; sequence gi|805754615|ref|XP_012138734.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26231 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26231 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26231 124 - . alignment_id 1 ; Query gi|805754615|ref|XP_012138734.1| ; Align 26232 127 93 ; Align 26139 159 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754615|ref|XP_012138734.1| PREDICTED: odorant receptor 24a-like [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 103 -> 212 Target range: 14242 -> 13918 104 : LeuGluAspLeuThrLysLeuAlaSerThrValAlaArgIleTyrArgThrCysIleLeu : 123 |||.!.|||! !||| ! ! !!!! !:!!!.!!:! !! ! !.!! ! :!! LeuAsnAspGlnThrValTyrPheThrTyrIleValLysTyrSerIleAlaAsnAlaIle 14242 : TTAAACGACCAAACTGTTTATTTTACGTACATTGTCAAATATTCGATAGCGAACGCGATC : 14185 124 : SerSerMetThrIlePheLeuSerValThrLeuLeuProSerValLeuAspValIleLeu : 143 !!!!:!:! !:!:|||:!!|||..! !!:!! !||| !:!!||||||:!!:!!||| ValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeu 14184 : GTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTA : 14125 144 : ProLeuAsnGluThrArgProArgGlnGlnLeuPheAsnValGluTyrLeuPhePheAsp : 163 ||| !||||||:!!||| ! ! ! ! :!!!:! !.! |||! !||| !||| ProLysAsnGluSerArgAspValAlaTyrIleTyrProAla---TyrTyrPheThrAsp 14124 : CCGAAGAACGAGTCACGAGACGTAGCGTACATTTATCCGGCC---TATTATTTCACCGAC : 14068 164 : LysAspGluTyrTyrTyrSerValTyrLeuGlnLeuSerTrpSerThrPheValIleVal : 183 :!! !!:!!||| !! ! !:!! ! !!!.:!!:!!! !! !.!!|||:!: !! GluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPhe 14067 : GAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTT : 14008 184 : MetValIleGlyPheValAspSerLeuTyrIleIleIleIleHisHisSerSerGlyLeu : 203 ||| !! ! ! !|||!!! !|||||| !:!!:!:!!.|||.!!!!!|||||| TyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeu 14007 : TACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTG : 13948 204 : PheAlaValCysGlyGluGlnIleLys : 212 !!.||||||! !||| :::|||::: LeuAlaValSerGly***LysIleArg 13947 : TTGGCCGTGTCCGGgtaaaaaattcga : 13919 vulgar: gi|805754615|ref|XP_012138734.1| 103 212 . LHQN01017803.1 14242 13918 - 114 M 54 162 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13919 14242 114 - . gene_id 2 ; sequence gi|805754615|ref|XP_012138734.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13919 14242 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13919 14242 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 13919 14242 114 - . alignment_id 2 ; Query gi|805754615|ref|XP_012138734.1| ; Align 14243 104 162 ; Align 14081 159 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754615|ref|XP_012138734.1| PREDICTED: odorant receptor 24a-like [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 121 -> 171 Target range: 33708 -> 33561 122 : IleLeuSerSerMetThrIlePheLeuSerValThrLeuLeuProSerValLeuAspVal : 141 |||! !! !.!!:!!:!!:!:|||! !!!!!.! !!|||:!!|||! !:!!||||||:!! IleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeuAspLeu 33708 : ATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTGGACCTA : 33651 142 : IleLeuProLeuAsnGluThrArgProArgGlnGlnLeuPheAsnValGluTyrLeuPhe : 161 |||! !||||||||||||:!!||||||||| ! ! !!:!!!.!.! |||! !!:! IleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAla---TyrCysTyr 33650 : ATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCC---TACTGTTAC : 33594 162 : PheAspLysAspGluTyrTyrTyrSerVal : 171 |||:!! !|||!!:|||||||||! !||| PheAsnProAspAspTyrTyrTyrTyrVal 33593 : TTCAATCCGGACGACTACTATTATTACGTC : 33562 vulgar: gi|805754615|ref|XP_012138734.1| 121 171 . LHQN01017803.1 33708 33561 - 104 M 36 108 G 1 0 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33562 33708 104 - . gene_id 3 ; sequence gi|805754615|ref|XP_012138734.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33562 33708 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33562 33708 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 33562 33708 104 - . alignment_id 3 ; Query gi|805754615|ref|XP_012138734.1| ; Align 33709 122 108 ; Align 33601 159 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754569|ref|XP_012138607.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 108 -> 162 Target range: 32846 -> 32586 109 : TyrAsnCysAsnTrpTyrLysIleProIleLysPheGlnLysLeuLeuCysThrMetIle : 128 |||.!....! !|||||||||!!:||| !|||.!!||| !||| ! !..! !:!! TyrGluAlaIleTrpTyrLysMetProProLysLeuGlnLeuLeuAspValValAlaLeu 32846 : TACGAGGCAATTTGGTATAAGATGCCACCTAAACTTCAGTTGCTAGACGTTGTAGCGCTT : 32789 129 : GlyArgCysAsnArgProCysIleLeuSerAlaGlyGlyLeuTyrAspMetAsnMetGlu : 148 !!!:! !! ! !||| !||||||!!!|||||||||||| :!::!!:!!.!. ArgLysSerLeuThrProProIleLeuThrAlaGlyGlyLeuMetArgLeuAspLeuAsn 32788 : AGAAAAAGCCTAACTCCTCCTATACTGACGGCGGGAGGGTTGATGCGGTTAGATTTGAAT : 32729 149 : AsnTyrGlyLys >>>> Target Intron 1 >>>> AlaValLysAlaCysMetS : 159 ::!!:!!.!:!! 98 bp :!!|||||||||:!:| SerPheAlaGln++ ++LeuLeuLysAlaCysValS 32728 : TCTTTCGCACAGgt.........................agctaCTGAAAGCTTGCGTCT : 32598 160 : erTyrPheThr : 162 |||||!:!||| erTyrTyrThr 32597 : CGTATTATACG : 32587 vulgar: gi|805754569|ref|XP_012138607.1| 108 162 . LHQN01017803.1 32846 32586 - 103 M 44 132 5 0 2 I 0 94 3 0 2 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 32587 32846 103 - . gene_id 1 ; sequence gi|805754569|ref|XP_012138607.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 32715 32846 . - . LHQN01017803.1 exonerate:protein2genome:local exon 32715 32846 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 32713 32714 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 32617 32714 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 32617 32618 . - . intron_id 0 ; splice_site "ag" LHQN01017803.1 exonerate:protein2genome:local cds 32587 32616 . - . LHQN01017803.1 exonerate:protein2genome:local exon 32587 32616 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 32587 32846 103 - . alignment_id 1 ; Query gi|805754569|ref|XP_012138607.1| ; Align 32847 109 132 ; Align 32617 153 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754623|ref|XP_012138758.1| PREDICTED: odorant receptor 9a-like isoform X1 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 131 -> 213 Target range: 29613 -> 29370 132 : MetIlePheAsnTyrIleProLeuIleProProThrLeuAspIleIleLeuProArgAsn : 151 :!::!!|||!.! :!: !!:!!! !|||! !..!||||||:!!|||! !|||!:!||| ValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 29613 : GTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAAC : 29556 152 : GluSerArgProArgHisGlnLeuPheGlnValAsnTyrValPhePheAspAlaAspAsp : 171 ||||||||| ! ! ! :!!!:!! !.!|||||| ! !!|||! !!!:!!: GluSerArgGlyValGlyPheIleTyrProAlaAsnTyr---GlyValAspGluGluGlu 29555 : GAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTAC---GGCGTCGACGAAGAGGAG : 29499 172 : HisPheIlePheThrTyrLeuHisMetPheTrpAlaGlySerLeuThrValPheValVal : 191 |||!:! !!:! ! !||||||.!!! !.! !!!!:!!..! !!|||||| ! HisTyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyr 29498 : CATTACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTAC : 29439 192 : ValThrValAspSerLeuTyrMetLeuIleIleHisHisAlaSerGlyLeuPheAspVal : 211 :!!:!! !|||!!!:!!|||||| !|||:!:!!.||||||!!!||||||!!.:!!:!! IleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeu 29438 : ATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTC : 29379 212 : CysGly : 213 ! !||| SerGly 29378 : TCTGGG : 29371 vulgar: gi|805754623|ref|XP_012138758.1| 131 213 . LHQN01017803.1 29613 29370 - 131 M 33 99 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29371 29613 131 - . gene_id 1 ; sequence gi|805754623|ref|XP_012138758.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29371 29613 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29371 29613 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 29371 29613 131 - . alignment_id 1 ; Query gi|805754623|ref|XP_012138758.1| ; Align 29614 132 99 ; Align 29515 166 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754623|ref|XP_012138758.1| PREDICTED: odorant receptor 9a-like isoform X1 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 132 -> 213 Target range: 26228 -> 25988 133 : IlePheAsnTyrIleProLeuIleProProThrLeuAspIleIleLeuProArgAsnGlu : 152 :!!|||! ! !:!:|||!!!:!: !!|||! !|||||||||:!!:!!||| !|||||| LeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGlu 26228 : CTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAG : 26171 153 : SerArgProArgHisGlnLeuPheGlnValAsnTyrValPhePheAspAlaAspAspHis : 172 !!!||| !!||| :!!!:!! !!.! ||| !||| !!|||! !||| ! :!! ThrArgAlaArgLeuPheValTyrProAla---TyrTyrPheValAspGluAspLysTyr 26170 : ACGCGAGCACGGTTGTTCGTCTATCCAGCT---TACTATTTCGTCGACGAGGACAAATAT : 26114 173 : PheIlePheThrTyrLeuHisMetPheTrpAlaGlySerLeuThrValPheValValVal : 192 ! !!!.! ! !||||||!:! !.!! ! !:!! !:!!! !||| !! ! HisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCys 26113 : CATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGC : 26054 193 : ThrValAspSerLeuTyrMetLeuIleIleHisHisAlaSerGlyLeuPheAspValCys : 212 .!! !|||:!! !|||:!!! ! !:!:!!.||||||!!!||||||!!.! !:!!... AlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla 26053 : GCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCA : 25994 213 : Gly : 213 ||| Gly 25993 : GGG : 25989 vulgar: gi|805754623|ref|XP_012138758.1| 132 213 . LHQN01017803.1 26228 25988 - 112 M 30 90 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26228 112 - . gene_id 2 ; sequence gi|805754623|ref|XP_012138758.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26228 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26228 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26228 112 - . alignment_id 2 ; Query gi|805754623|ref|XP_012138758.1| ; Align 26229 133 90 ; Align 26139 164 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754623|ref|XP_012138758.1| PREDICTED: odorant receptor 9a-like isoform X1 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 127 -> 213 Target range: 14185 -> 13930 128 : LeuThrPheThrMetIlePheAsnTyrIleProLeuIleProProThrLeuAspIleIle : 147 :!!..!! !..!!!::!:||| ! ! |||:!!! !|||! !! !|||||||||:!! IleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeu 14185 : ATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTA : 14128 148 : LeuProArgAsnGluSerArgProArgHisGlnLeuPheGlnValAsnTyrValPhePhe : 167 ||||||!:!|||||||||||| ! ! ! :!!!:!! !!.! ||| !||| ! LeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAla---TyrTyrPheThr 14127 : CTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTATCCGGCC---TATTATTTCACC : 14071 168 : AspAlaAspAspHisPheIlePheThrTyrLeuHisMetPheTrpAlaGlySerLeuThr : 187 |||! ! !! ! :!! !:!:!:!! ! ! !|||||| ! !.! ! !:!!..! AspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValVal 14070 : GACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTG : 14011 188 : ValPheValValValThrValAspSerLeuTyrMetLeuIleIleHisHisAlaSerGly : 207 !!!:!||| !|||.!! !|||!!! !|||!!:! !:!!:!:!!.|||!.!!!!||| PheTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGly 14010 : TTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGA : 13951 208 : LeuPheAspValCysGly : 213 |||!!.! !|||! !||| LeuLeuAlaValSerGly 13950 : TTGTTGGCCGTGTCCGGg : 13931 vulgar: gi|805754623|ref|XP_012138758.1| 127 213 . LHQN01017803.1 14185 13930 - 110 M 35 105 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13931 14185 110 - . gene_id 3 ; sequence gi|805754623|ref|XP_012138758.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13931 14185 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13931 14185 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 13931 14185 110 - . alignment_id 3 ; Query gi|805754623|ref|XP_012138758.1| ; Align 14186 128 105 ; Align 14081 164 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383861640|ref|XP_003706293.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 1022 Query range: 0 -> 404 Target range: 4393578 -> 4395883 1 : MetArgGlnProSerLysAspThrIleAspTyrTyrIleLeuProAsnLysIleLe : 19 |||!:!:!!! !||||||! :!!||||||||||||||||||||||||||||||!! MetLysGluLeuSerLysAlaSerIleAspTyrTyrIleLeuProAsnLysIlePh 4393579 : ATGAAAGAACTCTCTAAAGCGTCGATCGATTATTATATACTACCGAACAAGATCTT : 4393633 20 : uCysSerLeuTyrGlyIleTrpProSerAspGluLysProSerThrIleArgThrV : 38 !||||||:!! !|||!!:||||||! !||||||||| !|||||| !!!!! !: eCysSerIleAlaGlyMetTrpProIleAspGluLysSerSerThrArgSerLysL 4393634 : TTGTAGTATAGCTGGAATGTGGCCTATCGACGAGAAAAGTTCAACGCGTAGCAAAC : 4393690 39 : alMetSerValLeuHisIleLeuValSerIleValValValCysSerIleTyrVal : 56 !!.!.:!! !!!!!.!:!::!! !!.!!:!!..!!.!:!! !!|||:!!!:!||| euPheAlaTyrPheArgLeuIlePheGlyLeuThrAlaIleSerSerValPheVal 4393691 : TATTCGCATACTTCCGTCTGATATTCGGATTAACGGCAATCAGTAGTGTCTTCGTG : 4393744 57 : ProGluIleIleMetLeuLeuAlaSerTrpAspAspLeuSerIleLeuAla{G} : 74 |||||||||!!: !:!!:!! !!:!|||! !|||:!!!!!|||||||||{|} ProGluIleMetAlaIleValTrpAsnTrpGlyAspIleArgIleLeuAla{G}+- 4393745 : CCAGAAATTATGGCGATAGTGTGGAATTGGGGTGACATAAGAATCTTGGCA{G}gc : 4393799 75 : >>>> Target Intron 1 >>>> {ly}AlaGlySerIleThrLeuThrIleT : 83 311 bp {||}!.!|||!!!:!! ! !|||:!! ++{ly}ValGlyCysValLeuThrThrValG 4393800 : .........................ag{GA}GTAGGATGCGTTTTAACAACAGTCG : 4394136 84 : hrGlnPheLeuPheLysThrValTyrIleLeuAlaLysArgGluSerAlaTyrLys : 101 !|||...||||||||| :!!|||:!!:!!|||!:!|||!!:!.!.!!|||||| lyGlnLeuLeuPheLysMetIleTyrLeuIleAlaArgArgAspLysThrTyrLys 4394137 : GACagttattattcaaaatgATTTACCTAATAGCGAGAAGGGACAAAACGTACAAG : 4394190 102 : LeuLeuGluGluLeuLysSerLeuTrpTyrSerThrAspAsnProMetGluArgAr : 120 |||! !.!.|||:!!:::..!|||||| !!|||:!!|||:!!|||! ||||||!: LeuCysAsnGluIleArgAspLeuTrpAspSerSerAspAspProLysGluArgGl 4394191 : CTTTGCAACGAAATACGTGATCTATGGGATTCATCCGATGATCCAAAAGAAAGACA : 4394247 121 : gSerTyrGluGluPheAlaTyrTrpGlyArgThrSerThrIleSerPhePheValS : 139 !||||||||||||.!!|||:!!|||!.!|||!.! !||||||! !|||!:! !| nSerTyrGluGluLeuAlaHisTrpAlaArgAsnLeuThrIleIlePheTyrSerS 4394248 : GTCCTACGAAGAGCTCGCTCATTGGGCAAGAAACCTTACGATAATCTTTTACTCGT : 4394304 140 : erGlyIleLeuThrThrPheThrPheMetLeuSerAlaThrLeuAspSerMetLys : 157 || !!!!:! !!.!..!|||||||||! !:!!:!!|||.!!!!!|||! !.!.! ! erCysMetCysAsnValPheThrPheThrIleAlaAlaAlaPheAspTyrPheThr 4394305 : CCTGCATGTGCAACGTGTTCACATTCACGATTGCCGCAGCCTTCGATTATTTCACG : 4394358 158 : GlnGlyTyr<->PheAspAsnGlyThrSerAsnArgHisLeuProTyrAspVal{T : 175 ! !||| !!..!:!!!.! !!.!!:!||||||||||||!:!!!:|||{| IleGluTyrSerValSerAspAlaAspLysSerArgHisLeuProPheGluVal{T 4394359 : ATCGAATACAGCGTCAGCGATGCTGATAAAAGTCGACACTTGCCCTTCGAAGTC{T : 4394415 176 : r} >>>> Target Intron 2 >>>> {p}HisGlyMetThrTyrLeuLysS : 183 |} 189 bp {|}:!!|||!!: ! ! ! !| r}++ ++{p}TyrGlyIleAspIleThrProS 4394416 : G}gt.........................ag{G}TATGGAATAGACATCACACCGT : 4394628 184 : erProGluPheGluIleIleTyrValGlyGlnIleMetAlaSerPheAlaCysCys : 201 |||||...||||||||| !!:!:!! !!||||||:!:||||||.!. !|||... erProArgPheGluIleAlaPheLeuCysGlnIleValAlaSerMetIleCysAla 4394629 : CTCCTCGCTTCGAGATCGCTTTCCTTTGTCAAATCGTAGCATCTATGATCTGCGCA : 4394682 202 : CysAlaValCysGlyMetAspGlyMetLeuLeuThrThrIleLeuHisLeuSerGl : 220 ..!|||:!!! |||:!!|||!.!! !!!!:!!|||||||||||||||:!!||||| AlaAlaIleSerGlyLeuAspAlaThrPheMetThrThrIleLeuHisValSerGl 4394683 : GCCGCGATCTCAGGCTTGGACGCGACGTTTATGACCACGATTCTACACGTGTCTGG : 4394739 221 : yGlnPheArgLeuIleThrThrTrpLeuThrAsnIleGlyIleGluMetAsnTyrT : 239 |||||||!:!||||||!.!! !|||:!!!:!!!.||||||||||||!!:||| ! yGlnPheLysLeuIleAsnArgTrpIleSerLysIleGlyIleGluIleAsnIleG 4394740 : TCAATTCAAATTGATCAACAGATGGATCAGTAAGATTGGAATAGAGATAAATATCG : 4394796 240 : hrThrIleAspLeuSerLysArgProValLysIleValAlaGlyLeuMetLysCys : 257 ! !! ! !||| !|||:!! !|||..!|||!!:|||||| lu------------ProAspTyrProArgLysLeuLysAlaAsnLeuIleLysCys 4394797 : AG------------CCCGATTATCCGCGAAAATTAAAAGCGAATCTGATCAAATGC : 4394838 258 : IleArgHisHisGlnArgLeuIle{Ly} >>>> Target Intron 3 >>>> : 266 ||||||||||||||||||:!!|||{!!} 131 bp IleArgHisHisGlnArgMetIle{As}++ + 4394839 : ATTCGCCATCACCAACGAATGATA{AA}gt.........................a : 4394996 267 : {s}ThrValLysAspValAsnIlePheMetThrProIleValPheValHisLeuL : 284 {.}..!|||!!.||||||||| ...:::|||||||||:!!|||:!!!!.|||| +{n}ValValAsnAspValAsnAsnLeuLeuThrProIleIlePheMetGlnLeuL 4394997 : g{C}GTTGTGAACGacgtgaataatttattaacaccCATCATTTTCATGCAACTTC : 4395050 285 : euThrSerGlyMetGlnIleCysLeuThrGlyPheAlaValLeuSerAsnAsnVal : 302 |||||||||||!!::!!|||||||||!:!||||||||||||:!!..!|||..!..! euThrSerGlyIleGluIleCysLeuSerGlyPheAlaValIleAspAsnGlyThr 4395051 : TTACGAGCGGAATAGAGATTTGTTTGAGTGGATTCGCGGTGATCGATAACGGCACC : 4395104 303 : GlyAlaAsnValPheLysPheIleSerTyrLeuGlyAlaValMetIleGlnLeuVa : 321 |||.!!:!!:!!.!!||||||:!:||||||||| !:!!:!! !:!:||||||:! GlyThrAspLeuLeuLysPheValSerTyrLeuThrSerMetGlyValGlnLeuLe 4395105 : GGTACCGATCTTCTCAAATTTGTGTCTTATTTAACCTCGATGGGGGTGCAACTTTT : 4395161 322 : lMetLeuCysTrpProGlyGluIleLeuIleGlnGluSerGlnLysValAlaTyrA : 340 !:!:! !|||||||||||||||||||||:!!||||||||| !:!!:!!!.!:!!! uLeuTrpCysTrpProGlyGluIleLeuValGlnGluSerLeuGluIleGlyHisV 4395162 : GCTATGGTGTTGGCCTGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGTCATG : 4395218 341 : laAlaTyrLeuAsnValProTrpTyrGlnLeuProLeuCysTyrArgArgHisLeu : 358 .!!.!|||||||||:!!|||||||||.!.||||||! ! !|||!:!!:!!!.||| alValTyrLeuAsnIleProTrpTyrAsnLeuProProIleTyrGlnLysGlnLeu 4395219 : TAGTCTATCTAAATATACCATGGTACAATTTACCACCGATTTATCAGAAACAACTT : 4395272 359 : LeuPheValIleMetLysAlaGlnGluSerCysCysIleLysAlaLeuThrPheGl : 377 ! !.!.:!!|||!!:!:!||||||:!!! !||| !!|||! !||||||||||||:! CysLeuMetIleIleArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPheGl 4395273 : TGCCTGATGATCATTAGGGCCCAACAGTATTGCAGCATTACGGCATTAACGTTTCA : 4395329 378 : uSerLeuSerSerHisThrLeuThrSer >>>> Target Intron 4 >>>> : 387 !!!!||||||! !||||||||||||:!! 471 bp nThrLeuSerIleHisThrLeuThrAla++ + 4395330 : AACGTTGTCTATTCACACGTTAACAGCCgt.........................a : 4395828 388 : ValPheAsnThrAlaAlaSerTyrPheThrLeuLeuArgGlnMetGlnGluThr : 404 ||||||||||||||||||||||||||||||||||||||||||||||||:!!||| +ValPheAsnThrAlaAlaSerTyrPheThrLeuLeuArgGlnMetGlnGlnThr 4395829 : gGTATTCAATACAGCTGCTTCGTATTTTACTTTGCTGCGACAAATGCAGCAAACG : 4395883 vulgar: gi|383861640|ref|XP_003706293.1| 0 404 . KQ414784.1 4393578 4395883 + 1022 M 73 219 S 0 1 5 0 2 I 0 307 3 0 2 S 1 2 M 86 258 G 0 3 M 14 42 S 0 2 5 0 2 I 0 185 3 0 2 S 1 1 M 64 192 G 4 0 M 22 66 S 0 2 5 0 2 I 0 127 3 0 2 S 1 1 M 120 360 5 0 2 I 0 467 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4393579 4395883 1022 + . gene_id 1 ; sequence gi|383861640|ref|XP_003706293.1| ; gene_orientation + KQ414784.1 exonerate:protein2genome:local cds 4393579 4393798 . + . KQ414784.1 exonerate:protein2genome:local exon 4393579 4393798 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4393799 4393800 . + . intron_id 1 ; splice_site "GC" KQ414784.1 exonerate:protein2genome:local intron 4393799 4394109 . + . intron_id 1 KQ414784.1 exonerate:protein2genome:local splice3 4394108 4394109 . + . intron_id 0 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394110 4394416 . + . KQ414784.1 exonerate:protein2genome:local exon 4394110 4394416 . + . insertions 3 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4394417 4394418 . + . intron_id 2 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4394417 4394605 . + . intron_id 2 KQ414784.1 exonerate:protein2genome:local splice3 4394604 4394605 . + . intron_id 1 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394606 4394866 . + . KQ414784.1 exonerate:protein2genome:local exon 4394606 4394866 . + . insertions 0 ; deletions 4 KQ414784.1 exonerate:protein2genome:local splice5 4394867 4394868 . + . intron_id 3 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4394867 4394997 . + . intron_id 3 KQ414784.1 exonerate:protein2genome:local splice3 4394996 4394997 . + . intron_id 2 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394998 4395358 . + . KQ414784.1 exonerate:protein2genome:local exon 4394998 4395358 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4395359 4395360 . + . intron_id 4 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4395359 4395829 . + . intron_id 4 KQ414784.1 exonerate:protein2genome:local splice3 4395828 4395829 . + . intron_id 3 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4395830 4395883 . + . KQ414784.1 exonerate:protein2genome:local exon 4395830 4395883 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local similarity 4393579 4395883 1022 + . alignment_id 1 ; Query gi|383861640|ref|XP_003706293.1| ; Align 4393579 1 219 ; Align 4394112 75 258 ; Align 4394373 161 42 ; Align 4394607 176 192 ; Align 4394799 244 66 ; Align 4394999 267 360 ; Align 4395830 387 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383861642|ref|XP_003706294.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 679 Query range: 191 -> 417 Target range: 4394609 -> 4395877 192 : GlyIleAspPheIleAspSerProGluPheGluIleIlePheValSerGlnIleLe : 210 |||||||||.!!! ! ||||||...||||||||| !|||:!!!!!||||||:! GlyIleAspIleThrProSerProArgPheGluIleAlaPheLeuCysGlnIleVa 4394610 : GGAATAGACATCACACCGTCTCCTCGCTTCGAGATCGCTTTCCTTTGTCAAATCGT : 4394664 211 : uAlaSerLeuPheAlaAlaCysAlaValIleGlyLeuAspSerThrCysValThrI : 229 !||||||:!!.!!..!|||..!|||:!! !|||||||||:!!|||! !:!!|||! lAlaSerMetIleCysAlaAlaAlaIleSerGlyLeuAspAlaThrPheMetThrT 4394665 : AGCATCTATGATCTGCGCAGCCGCGATCTCAGGCTTGGACGCGACGTTTATGACCA : 4394721 230 : leIleLeuHisLeuSerGlyGlnPheArgLeuIleThrThrTrpLeuSerAsnIle : 247 |||||||||:!!||||||||||||!:!||||||!.!! !|||:!!|||!!.||| hrIleLeuHisValSerGlyGlnPheLysLeuIleAsnArgTrpIleSerLysIle 4394722 : CGATTCTACACGTGTCTGGTCAATTCAAATTGATCAACAGATGGATCAGTAAGATT : 4394775 248 : GlyIleGluMetGlnTyrAsnArgIleAspLeuHisAsnCysProProSerValSe : 266 |||||||||!!:.!. !.!. ! !:!!! !|||! !!.!:!!!. GlyIleGluIleAsnIleGlu------------ProAspTyrProArgLysLeuLy 4394776 : GGAATAGAGATAAATATCGAG------------CCCGATTATCCGCGAAAATTAAA : 4394820 267 : rAlaAspLeuIleLysCysIleArgHisHisGlnArgLeuIle{Ly} >>>> Ta : 281 !|||:!!||||||||||||||||||||||||||||||:!!|||{!!} sAlaAsnLeuIleLysCysIleArgHisHisGlnArgMetIle{As}++ 4394821 : AGCGAATCTGATCAAATGCATTCGCCATCACCAACGAATGATA{AA}gt....... : 4394869 282 : rget Intron 1 >>>> {s}ValLeuGlnAspValAsnSerLeuLeuThrPro : 292 131 bp {.}|||:!!.!.|||||||||:::|||||||||||| ++{n}ValValAsnAspValAsnAsnLeuLeuThrPro 4394870 : ..................ag{C}GTTGTGAACGacgtgaataatttattaacaccC : 4395029 293 : IleIlePheMetGlnValPheThrSerSerIleValPheCysLeuGlyGlyTyrAl : 311 |||||||||||||||:!!.!!||||||.!!|||! !.!!||||||.!!|||!:!|| IleIlePheMetGlnLeuLeuThrSerGlyIleGluIleCysLeuSerGlyPheAl 4395030 : ATCATTTTCATGCAACTTCTTACGAGCGGAATAGAGATTTGTTTGAGTGGATTCGC : 4395086 312 : aIleIleSerAsnAsnAlaAlaAspAspLeuPheLysPheValSerTyrIleLeuS : 330 |:!:|||..!|||..!.!!!.! !||||||.!!|||||||||||||||:!! !| aValIleAspAsnGlyThrGlyThrAspLeuLeuLysPheValSerTyrLeuThrS 4395087 : GGTGATCGATAACGGCACCGGTACCGATCTTCTCAAATTTGTGTCTTATTTAACCT : 4395143 331 : erMetThrIleGlnLeuLeuLeuTrpCysTrpProGlyGluIleLeuIleGluGlu : 348 ||||| !:!:||||||||||||||||||||||||||||||||||||:!!:!!||| erMetGlyValGlnLeuLeuLeuTrpCysTrpProGlyGluIleLeuValGlnGlu 4395144 : CGATGGGGGTGCAACTTTTGCTATGGTGTTGGCCTGGTGAAATTCTCGTTCAAGAG : 4395197 349 : SerLeuHisIleGlyTyrAlaAlaTyrValAsnValProTrpTyrAsnLeuProPr : 367 ||||||.!.||||||:!!!.!!.!|||:!!|||:!!|||||||||||||||||||| SerLeuGluIleGlyHisValValTyrLeuAsnIleProTrpTyrAsnLeuProPr 4395198 : AGTTTAGAAATAGGTCATGTAGTCTATCTAAATATACCATGGTACAATTTACCACC : 4395254 368 : oPheTyrArgArgGlnLeuCysLeuIleValLeuArgSerGlnLysThrCysSerL : 386 |.!!|||!:!!:!||||||||||||!!::!!:!!|||:!!|||:!! !||||||: oIleTyrGlnLysGlnLeuCysLeuMetIleIleArgAlaGlnGlnTyrCysSerI 4395255 : GATTTATCAGAAACAACTTTGCCTGATGATCATTAGGGCCCAACAGTATTGCAGCA : 4395311 387 : euSerAlaPheIlePheHisSerLeuSerIleTyrThrLeuThrAsn >>>> Ta : 402 !!!!!|||!!.! |||!!.!!!|||||||||:!!||||||||| ! leThrAlaLeuThrPheGlnThrLeuSerIleHisThrLeuThrAla++ 4395312 : TTACGGCATTAACGTTTCAAACGTTGTCTATTCACACGTTAACAGCCgt....... : 4395361 403 : rget Intron 2 >>>> ValLeuAsnThrAlaPheSerTyrPheAlaLeuLeu : 413 471 bp |||!!!||||||||| !|||||||||.!!|||||| ++ValPheAsnThrAlaAlaSerTyrPheThrLeuLeu 4395362 : ..................agGTATTCAATACAGCTGCTTCGTATTTTACTTTGCTG : 4395863 414 : ArgGlnIleGln : 417 ||||||!!:||| ArgGlnMetGln 4395864 : CGACAAATGCAG : 4395877 vulgar: gi|383861642|ref|XP_003706294.1| 191 417 . KQ414784.1 4394609 4395877 + 679 M 63 189 G 4 0 M 22 66 S 0 2 5 0 2 I 0 127 3 0 2 S 1 1 M 120 360 5 0 2 I 0 467 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4394610 4395877 679 + . gene_id 1 ; sequence gi|383861642|ref|XP_003706294.1| ; gene_orientation + KQ414784.1 exonerate:protein2genome:local cds 4394610 4394866 . + . KQ414784.1 exonerate:protein2genome:local exon 4394610 4394866 . + . insertions 0 ; deletions 4 KQ414784.1 exonerate:protein2genome:local splice5 4394867 4394868 . + . intron_id 1 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4394867 4394997 . + . intron_id 1 KQ414784.1 exonerate:protein2genome:local splice3 4394996 4394997 . + . intron_id 0 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394998 4395358 . + . KQ414784.1 exonerate:protein2genome:local exon 4394998 4395358 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4395359 4395360 . + . intron_id 2 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4395359 4395829 . + . intron_id 2 KQ414784.1 exonerate:protein2genome:local splice3 4395828 4395829 . + . intron_id 1 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4395830 4395877 . + . KQ414784.1 exonerate:protein2genome:local exon 4395830 4395877 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local similarity 4394610 4395877 679 + . alignment_id 1 ; Query gi|383861642|ref|XP_003706294.1| ; Align 4394610 192 189 ; Align 4394799 259 66 ; Align 4394999 282 360 ; Align 4395830 402 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383861642|ref|XP_003706294.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 385 Query range: 0 -> 157 Target range: 4393578 -> 4394360 1 : MetArgGlnProSerLysAspThrIleAspTyrTyrIlePheProAsnLysIleLe : 19 |||!:!:!!! !||||||! :!!|||||||||||||||.!.||||||||||||!! MetLysGluLeuSerLysAlaSerIleAspTyrTyrIleLeuProAsnLysIlePh 4393579 : ATGAAAGAACTCTCTAAAGCGTCGATCGATTATTATATACTACCGAACAAGATCTT : 4393633 20 : uCysSerMetPheGlyMetTrpProSerAspLysLysArgSerThrValArgLysM : 38 !||||||!!: !||||||||||||! !|||:!!|||!!!|||||| !!!!|||: eCysSerIleAlaGlyMetTrpProIleAspGluLysSerSerThrArgSerLysL 4393634 : TTGTAGTATAGCTGGAATGTGGCCTATCGACGAGAAAAGTTCAACGCGTAGCAAAC : 4393690 39 : etLeuAlaTyrLeuHisPheValPheSerValLeuThrValCysValIleValVal : 56 !:!!!||||||!!!!.!.!.:!!|||.!!:!! !.!!:!! !! !:!! !!||| euPheAlaTyrPheArgLeuIlePheGlyLeuThrAlaIleSerSerValPheVal 4393691 : TATTCGCATACTTCCGTCTGATATTCGGATTAACGGCAATCAGTAGTGTCTTCGTG : 4393744 57 : ProGluIleIleLeuLeuAlaValArgTrpArgAspLeuLysIlePheAla{G} : 74 |||||||||!!: !:!!!.! !!.!||| !!|||:!!!:!|||!!.|||{|} ProGluIleMetAlaIleValTrpAsnTrpGlyAspIleArgIleLeuAla{G}+- 4393745 : CCAGAAATTATGGCGATAGTGTGGAATTGGGGTGACATAAGAATCTTGGCA{G}gc : 4393799 75 : >>>> Target Intron 1 >>>> {ly}AlaGlyCysIleIleMetSerLeuM : 83 311 bp {||}!.!||||||:!!:!!! !!!:!! ++{ly}ValGlyCysValLeuThrThrValG 4393800 : .........................ag{GA}GTAGGATGCGTTTTAACAACAGTCG : 4394136 84 : etGlnValLeuPheLysThrValTyrLeuThrMetLysArgGluGluAlaHisLys : 101 |||:::||||||||| :!!||||||! ! !!:!|||!!::!!.!!:!!||| lyGlnLeuLeuPheLysMetIleTyrLeuIleAlaArgArgAspLysThrTyrLys 4394137 : GACagttattattcaaaatgATTTACCTAATAGCGAGAAGGGACAAAACGTACAAG : 4394190 102 : LeuTyrThrGluPheArgSerLeuTrpTyrLeuThrLysAspProValGluArgGl : 120 |||! !!.!|||.!.|||..!|||||| !!! !:!! ! |||||| !|||||||| LeuCysAsnGluIleArgAspLeuTrpAspSerSerAspAspProLysGluArgGl 4394191 : CTTTGCAACGAAATACGTGATCTATGGGATTCATCCGATGATCCAAAAGAAAGACA : 4394247 121 : nSerTyrGluLeuPheAlaTyrTrpAlaArgThrCysThrIleThrPheGlyValS : 139 |||||||||| !.!!|||:!!|||||||||!.! !||||||! !||| ! !| nSerTyrGluGluLeuAlaHisTrpAlaArgAsnLeuThrIleIlePheTyrSerS 4394248 : GTCCTACGAAGAGCTCGCTCATTGGGCAAGAAACCTTACGATAATCTTTTACTCGT : 4394304 140 : erCysValGlyThrMetIleIlePhePheIleSerAlaThrTyrAspTyrIleThr : 157 |||||:!! !!!.!:!!.!!! !||| |||:!!|||.!!!:!||||||.!!||| erCysMetCysAsnValPheThrPheThrIleAlaAlaAlaPheAspTyrPheThr 4394305 : CCTGCATGTGCAACGTGTTCACATTCACGATTGCCGCAGCCTTCGATTATTTCACG : 4394358 vulgar: gi|383861642|ref|XP_003706294.1| 0 157 . KQ414784.1 4393578 4394360 + 385 M 73 219 S 0 1 5 0 2 I 0 307 3 0 2 S 1 2 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4393579 4394360 385 + . gene_id 2 ; sequence gi|383861642|ref|XP_003706294.1| ; gene_orientation + KQ414784.1 exonerate:protein2genome:local cds 4393579 4393798 . + . KQ414784.1 exonerate:protein2genome:local exon 4393579 4393798 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4393799 4393800 . + . intron_id 1 ; splice_site "GC" KQ414784.1 exonerate:protein2genome:local intron 4393799 4394109 . + . intron_id 1 KQ414784.1 exonerate:protein2genome:local splice3 4394108 4394109 . + . intron_id 0 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394110 4394360 . + . KQ414784.1 exonerate:protein2genome:local exon 4394110 4394360 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local similarity 4393579 4394360 385 + . alignment_id 2 ; Query gi|383861642|ref|XP_003706294.1| ; Align 4393579 1 219 ; Align 4394112 75 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383861634|ref|XP_003706290.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 651 Query range: 0 -> 235 Target range: 4393578 -> 4394786 1 : MetGlyLysValSerLysAsnSerIleAspTyrTyrIleLeuProAsnLysIleLe : 19 ||| !:!!:!!|||||| |||||||||||||||||||||||||||||||||!! MetLysGluLeuSerLysAlaSerIleAspTyrTyrIleLeuProAsnLysIlePh 4393579 : ATGAAAGAACTCTCTAAAGCGTCGATCGATTATTATATACTACCGAACAAGATCTT : 4393633 20 : uCysSerMetIleGlyMetTrpProPheSerGluGluArgSerThrCysArgAsnA : 38 !||||||!!: !||||||||||||.!!..!|||:!!!!!|||||| !!!!!!!. eCysSerIleAlaGlyMetTrpProIleAspGluLysSerSerThrArgSerLysL 4393634 : TTGTAGTATAGCTGGAATGTGGCCTATCGACGAGAAAAGTTCAACGCGTAGCAAAC : 4393690 39 : laPheSerCysPheArgLeuValPheSerValThrAlaValCysThrIlePheVal : 56 !|||:!!! !|||||||||:!!|||.!!:!!||||||:!! !!!:!:!!|||||| euPheAlaTyrPheArgLeuIlePheGlyLeuThrAlaIleSerSerValPheVal 4393691 : TATTCGCATACTTCCGTCTGATATTCGGATTAACGGCAATCAGTAGTGTCTTCGTG : 4393744 57 : ProGlyIleMetIleIleValValLysTrpGlyAspLeuLysIleLeuThr{G} : 74 |||! !|||||| |||||| !!!.|||||||||:!!!:!||||||.!!{|} ProGluIleMetAlaIleValTrpAsnTrpGlyAspIleArgIleLeuAla{G}+- 4393745 : CCAGAAATTATGGCGATAGTGTGGAATTGGGGTGACATAAGAATCTTGGCA{G}gc : 4393799 75 : >>>> Target Intron 1 >>>> {ly}ValGlyCysIleLeuThrThrLeuA : 83 311 bp {||}|||||||||:!!|||||||||:!!! ++{ly}ValGlyCysValLeuThrThrValG 4393800 : .........................ag{GA}GTAGGATGCGTTTTAACAACAGTCG : 4394136 84 : laGlnCysLeuPheLysThrIleTyrLeuValAlaArgLysGluArgSerHisArg : 101 .!||| ||||||||| |||||||||:!!||||||!:!!!:!:!!!!:!!!:! lyGlnLeuLeuPheLysMetIleTyrLeuIleAlaArgArgAspLysThrTyrLys 4394137 : GACagttattattcaaaatgATTTACCTAATAGCGAGAAGGGACAAAACGTACAAG : 4394190 102 : LeuTyrLysGluLeuArgSerLeuTrpAspSerThrAspAspProThrGluMetGl : 120 |||! !!!.|||:!!|||..!||||||||||||:!!|||||||||! !|||! || LeuCysAsnGluIleArgAspLeuTrpAspSerSerAspAspProLysGluArgGl 4394191 : CTTTGCAACGAAATACGTGATCTATGGGATTCATCCGATGATCCAAAAGAAAGACA : 4394247 121 : nCysTyrGlnAspLeuAlaHisValAlaArgThrCysThrIleThrPheTyrSerC : 139 |! !|||:!!!!:||||||||| !||||||!.! !||||||! !|||||||||! nSerTyrGluGluLeuAlaHisTrpAlaArgAsnLeuThrIleIlePheTyrSerS 4394248 : GTCCTACGAAGAGCTCGCTCATTGGGCAAGAAACCTTACGATAATCTTTTACTCGT : 4394304 140 : ysGlyAlaLeuThrSerIleValPheIleIleSerAlaAlaLeuGluCysMetAsn : 157 ! !! !! !!.! !.!!..!|||! |||:!!||||||!!!!!:! !.!.!.. erCysMetCysAsnValPheThrPheThrIleAlaAlaAlaPheAspTyrPheThr 4394305 : CCTGCATGTGCAACGTGTTCACATTCACGATTGCCGCAGCCTTCGATTATTTCACG : 4394358 158 : ValAspValSer<->AsnGlyThrAspSerIleArgProLeuProPheGluVal{T : 175 :!!!!: !||| !:!! !.!!|||!.!! !|||! !|||||||||||||||{| IleGluTyrSerValSerAspAlaAspLysSerArgHisLeuProPheGluVal{T 4394359 : ATCGAATACAGCGTCAGCGATGCTGATAAAAGTCGACACTTGCCCTTCGAAGTC{T : 4394415 176 : r} >>>> Target Intron 2 >>>> {p}TyrGlyIleAspValSerGluS : 183 |} 189 bp {|}||||||||||||:!!!!! !| r}++ ++{p}TyrGlyIleAspIleThrProS 4394416 : G}gt.........................ag{G}TATGGAATAGACATCACACCGT : 4394628 184 : erProArgPheGluValValPheValCysGlnAlaLeuAlaSerThrIleCysAla : 201 ||||||||||||||:!!!.!|||:!!|||||| !:!!||||||! !||||||||| erProArgPheGluIleAlaPheLeuCysGlnIleValAlaSerMetIleCysAla 4394629 : CTCCTCGCTTCGAGATCGCTTTCCTTTGTCAAATCGTAGCATCTATGATCTGCGCA : 4394682 202 : ValAlaIleCysSerLeuAspThrAlaCysValThrAlaIleLeuHisValCysGl : 220 !.!||||||! .!!||||||.!!.!!! !:!!|||.!!||||||||||||! !|| AlaAlaIleSerGlyLeuAspAlaThrPheMetThrThrIleLeuHisValSerGl 4394683 : GCCGCGATCTCAGGCTTGGACGCGACGTTTATGACCACGATTCTACACGTGTCTGG : 4394739 221 : yGlnPheLysLeuIleSerValTrpIleSerHisIleGlyPheGlu : 235 ||||||||||||||||!:! !||||||||| ! ||||||.!.||| yGlnPheLysLeuIleAsnArgTrpIleSerLysIleGlyIleGlu 4394740 : TCAATTCAAATTGATCAACAGATGGATCAGTAAGATTGGAATAGAG : 4394786 vulgar: gi|383861634|ref|XP_003706290.1| 0 235 . KQ414784.1 4393578 4394786 + 651 M 73 219 S 0 1 5 0 2 I 0 307 3 0 2 S 1 2 M 87 261 G 0 3 M 13 39 S 0 2 5 0 2 I 0 185 3 0 2 S 1 1 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4393579 4394786 651 + . gene_id 1 ; sequence gi|383861634|ref|XP_003706290.1| ; gene_orientation + KQ414784.1 exonerate:protein2genome:local cds 4393579 4393798 . + . KQ414784.1 exonerate:protein2genome:local exon 4393579 4393798 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4393799 4393800 . + . intron_id 1 ; splice_site "GC" KQ414784.1 exonerate:protein2genome:local intron 4393799 4394109 . + . intron_id 1 KQ414784.1 exonerate:protein2genome:local splice3 4394108 4394109 . + . intron_id 0 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394110 4394416 . + . KQ414784.1 exonerate:protein2genome:local exon 4394110 4394416 . + . insertions 3 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4394417 4394418 . + . intron_id 2 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4394417 4394605 . + . intron_id 2 KQ414784.1 exonerate:protein2genome:local splice3 4394604 4394605 . + . intron_id 1 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394606 4394786 . + . KQ414784.1 exonerate:protein2genome:local exon 4394606 4394786 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local similarity 4393579 4394786 651 + . alignment_id 1 ; Query gi|383861634|ref|XP_003706290.1| ; Align 4393579 1 219 ; Align 4394112 75 261 ; Align 4394376 162 39 ; Align 4394607 176 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383861634|ref|XP_003706290.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 587 Query range: 245 -> 403 Target range: 4394801 -> 4395877 246 : AspSerArgArgAsnLeuArgThrAspLeuValLysCysIleArgHisGlnGlnAr : 264 |||! !! !|||!!.|||!:!.!!:!!|||:!!|||||||||||||||!!.||||| AspTyrProArgLysLeuLysAlaAsnLeuIleLysCysIleArgHisHisGlnAr 4394802 : GATTATCCGCGAAAATTAAAAGCGAATCTGATCAAATGCATTCGCCATCACCAACG : 4394856 265 : gLeuIle{As} >>>> Target Intron 1 >>>> {n}ValValLysAspV : 272 |:!!|||{||} 131 bp {|}||||||!!.|||| gMetIle{As}++ ++{n}ValValAsnAspV 4394857 : AATGATA{AA}gt.........................ag{C}GTTGTGAACGacg : 4395011 273 : alAsnThrLeuMetThrProIleIlePheIleGlnIleLeuThrSerGlyIleGlu : 290 |||||...|||:::|||||||||||||||!!:|||:!!|||||||||||||||||| alAsnAsnLeuLeuThrProIleIlePheMetGlnLeuLeuThrSerGlyIleGlu 4395012 : tgaataatttattaacaccCATCATTTTCATGCAACTTCTTACGAGCGGAATAGAG : 4395065 291 : IleCysLeuSerGlyPheAlaValPheSerTyrAspAlaGlyGlyAspLeuPheLy : 309 ||||||||||||||||||||||||.!!..! !!! !.!!||| !||||||.!!|| IleCysLeuSerGlyPheAlaValIleAspAsnGlyThrGlyThrAspLeuLeuLy 4395066 : ATTTGTTTGAGTGGATTCGCGGTGATCGATAACGGCACCGGTACCGATCTTCTCAA : 4395122 310 : sPheIleSerTyrLeuAlaSerMetMetValGlnLeuLeuLeuTrpCysTrpProG : 328 ||||:!:|||||||||.!!|||||| !|||||||||||||||||||||||||||| sPheValSerTyrLeuThrSerMetGlyValGlnLeuLeuLeuTrpCysTrpProG 4395123 : ATTTGTGTCTTATTTAACCTCGATGGGGGTGCAACTTTTGCTATGGTGTTGGCCTG : 4395179 329 : lyGluIleLeuAlaGlnGluSerGlnLysIleGlyHisSerValTyrLeuAsnIle : 346 |||||||||||!.!||||||||| !:!!||||||||| !||||||||||||||| lyGluIleLeuValGlnGluSerLeuGluIleGlyHisValValTyrLeuAsnIle 4395180 : GTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGTCATGTAGTCTATCTAAATATA : 4395233 347 : ProTrpTyrGlnLeuProLeuIleTyrArgLysLysIleLeuLeuMetIleLeuAr : 365 |||||||||.!.||||||! !||||||!:!|||:!!:!!! !|||||||||:!!|| ProTrpTyrAsnLeuProProIleTyrGlnLysGlnLeuCysLeuMetIleIleAr 4395234 : CCATGGTACAATTTACCACCGATTTATCAGAAACAACTTTGCCTGATGATCATTAG : 4395290 366 : gSerGlnLysTyrCysSerIleSerAlaLeuThrPheGlnSerLeuSerIleTyrT : 384 |:!!|||:!!||||||||||||!!!|||||||||||||||!!!|||||||||:!!| gAlaGlnGlnTyrCysSerIleThrAlaLeuThrPheGlnThrLeuSerIleHisT 4395291 : GGCCCAACAGTATTGCAGCATTACGGCATTAACGTTTCAAACGTTGTCTATTCACA : 4395347 385 : hrLeuThrSer >>>> Target Intron 2 >>>> ValPheAsnThrAlaS : 393 ||||||||:!! 471 bp |||||||||||||||: hrLeuThrAla++ ++ValPheAsnThrAlaA 4395348 : CGTTAACAGCCgt.........................agGTATTCAATACAGCTG : 4395845 394 : erSerTyrPheAlaLeuLeuArgGlnIleGln : 403 !!|||||||||.!!||||||||||||!!:||| laSerTyrPheThrLeuLeuArgGlnMetGln 4395846 : CTTCGTATTTTACTTTGCTGCGACAAATGCAG : 4395877 vulgar: gi|383861634|ref|XP_003706290.1| 245 403 . KQ414784.1 4394801 4395877 + 587 M 21 63 S 0 2 5 0 2 I 0 127 3 0 2 S 1 1 M 120 360 5 0 2 I 0 467 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4394802 4395877 587 + . gene_id 2 ; sequence gi|383861634|ref|XP_003706290.1| ; gene_orientation + KQ414784.1 exonerate:protein2genome:local cds 4394802 4394866 . + . KQ414784.1 exonerate:protein2genome:local exon 4394802 4394866 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4394867 4394868 . + . intron_id 1 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4394867 4394997 . + . intron_id 1 KQ414784.1 exonerate:protein2genome:local splice3 4394996 4394997 . + . intron_id 0 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394998 4395358 . + . KQ414784.1 exonerate:protein2genome:local exon 4394998 4395358 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4395359 4395360 . + . intron_id 2 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4395359 4395829 . + . intron_id 2 KQ414784.1 exonerate:protein2genome:local splice3 4395828 4395829 . + . intron_id 1 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4395830 4395877 . + . KQ414784.1 exonerate:protein2genome:local exon 4395830 4395877 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local similarity 4394802 4395877 587 + . alignment_id 2 ; Query gi|383861634|ref|XP_003706290.1| ; Align 4394802 246 63 ; Align 4394999 268 360 ; Align 4395830 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383861644|ref|XP_003706295.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 993 Query range: 0 -> 402 Target range: 4393578 -> 4395883 1 : MetGlyLysProSerGluAsnThrIleAspTyrTyrIleGlnProAsnLysIleLe : 19 ||| !:!!! !|||:!! :!!|||||||||||||||! !||||||||||||!! MetLysGluLeuSerLysAlaSerIleAspTyrTyrIleLeuProAsnLysIlePh 4393579 : ATGAAAGAACTCTCTAAAGCGTCGATCGATTATTATATACTACCGAACAAGATCTT : 4393633 20 : uCysSerIleTyrGlyLeuTrpProThrAspGluGluArgThrThrSerLysGlnV : 38 !||||||||| !|||:!!||||||! !||||||:!!!!!:!!||| !!!..:!!: eCysSerIleAlaGlyMetTrpProIleAspGluLysSerSerThrArgSerLysL 4393634 : TTGTAGTATAGCTGGAATGTGGCCTATCGACGAGAAAAGTTCAACGCGTAGCAAAC : 4393690 39 : alLeuAlaValValHisLeuValIleSerValIleIleValCysSerValPheVal : 56 !!!!!||| ! !!!.!|||:!!.!!.!!:!!! !:!! !!|||||||||||| euPheAlaTyrPheArgLeuIlePheGlyLeuThrAlaIleSerSerValPheVal 4393691 : TATTCGCATACTTCCGTCTGATATTCGGATTAACGGCAATCAGTAGTGTCTTCGTG : 4393744 57 : ProGluValIleIleLeuThrThrLysTrpArgAspLeuSerIleLeuAla{G} : 74 ||||||:!!!!: :!!..! !!!.||| !!|||:!!!!!|||||||||{|} ProGluIleMetAlaIleValTrpAsnTrpGlyAspIleArgIleLeuAla{G}+- 4393745 : CCAGAAATTATGGCGATAGTGTGGAATTGGGGTGACATAAGAATCTTGGCA{G}gc : 4393799 75 : >>>> Target Intron 1 >>>> {ly}AlaGlyThrLeuThrLeuThrMetT : 83 311 bp {||}!.!||| !:!! ! !|||:!: ++{ly}ValGlyCysValLeuThrThrValG 4393800 : .........................ag{GA}GTAGGATGCGTTTTAACAACAGTCG : 4394136 84 : hrGlnPheLeuPheLysThrIleTyrLeuThrThrLysArgAspThrAlaHisArg : 101 !|||...||||||||| |||||||||! !.!!!:!||||||! !.!!:!!!:! lyGlnLeuLeuPheLysMetIleTyrLeuIleAlaArgArgAspLysThrTyrLys 4394137 : GACagttattattcaaaatgATTTACCTAATAGCGAGAAGGGACAAAACGTACAAG : 4394190 102 : LeuLeuValGluLeuArgSerLeuTrpValThrThrAspAspProValGluArgGl : 120 |||! ! !|||:!!|||..!||||||! !:!!:!!||||||||| !|||||||| LeuCysAsnGluIleArgAspLeuTrpAspSerSerAspAspProLysGluArgGl 4394191 : CTTTGCAACGAAATACGTGATCTATGGGATTCATCCGATGATCCAAAAGAAAGACA : 4394247 121 : nSerTyrGluValPheAlaTyrTrpGlyArgIleSerThrIleGlyPhePheMetS : 139 ||||||||||! !.!!|||:!!|||!.!|||! ! !|||||| !|||!:! !| nSerTyrGluGluLeuAlaHisTrpAlaArgAsnLeuThrIleIlePheTyrSerS 4394248 : GTCCTACGAAGAGCTCGCTCATTGGGCAAGAAACCTTACGATAATCTTTTACTCGT : 4394304 140 : erAlaValGlySerThrSerLeuPheLeuValThrAlaThrLeuAspCysPhe<-> : 157 ||..!:!! !!!:!..!! ! !||| !:!!.!!|||.!!!!!|||! !||| erCysMetCysAsnValPheThrPheThrIleAlaAlaAlaPheAspTyrPheThr 4394305 : CCTGCATGTGCAACGTGTTCACATTCACGATTGCCGCAGCCTTCGATTATTTCACG : 4394358 158 : <->GluAspValGluAsnSerAsnArgThrAsnArgHisLeuProTyrAspVal{T : 174 ||| !! !! !:!..! ! !! !!:!||||||||||||!:!!!:|||{| IleGluTyrSerValSerAspAlaAspLysSerArgHisLeuProPheGluVal{T 4394359 : ATCGAATACAGCGTCAGCGATGCTGATAAAAGTCGACACTTGCCCTTCGAAGTC{T : 4394415 175 : r} >>>> Target Intron 2 >>>> {p}GlnGluLeuAspPheLeuLysS : 182 |} 189 bp {|} ! ! !:!!|||.!! ! !| r}++ ++{p}TyrGlyIleAspIleThrProS 4394416 : G}gt.........................ag{G}TATGGAATAGACATCACACCGT : 4394628 183 : erProGluPheGluValIleTyrAlaCysGlnIleLeuAlaThrLeuAsnAlaCys : 200 |||||...||||||:!! !!:! !|||||||||:!!|||:!!:!!! !..!... erProArgPheGluIleAlaPheLeuCysGlnIleValAlaSerMetIleCysAla 4394629 : CTCCTCGCTTCGAGATCGCTTTCCTTTGTCAAATCGTAGCATCTATGATCTGCGCA : 4394682 201 : CysAlaValCysGlyMetAspGlyMetCysTrpThrThrIleLeuTyrLeuSerGl : 219 ..!|||:!!! |||:!!|||!.!! !! ! !||||||||||||:!!:!!||||| AlaAlaIleSerGlyLeuAspAlaThrPheMetThrThrIleLeuHisValSerGl 4394683 : GCCGCGATCTCAGGCTTGGACGCGACGTTTATGACCACGATTCTACACGTGTCTGG : 4394739 220 : yGlnPheArgLeuIleThrThrTrpLeuAsnAsnIleGlyValGluMetAsnTyrL : 238 |||||||!:!||||||!.!! !|||:!!!:!!!.||||||:!!|||!!:||| !: yGlnPheLysLeuIleAsnArgTrpIleSerLysIleGlyIleGluIleAsnIleG 4394740 : TCAATTCAAATTGATCAACAGATGGATCAGTAAGATTGGAATAGAGATAAATATCG : 4394796 239 : ysProHisProLysAspCysSerValLysValAlaAlaAspLeuValLysCysIle : 256 !!||| |||! ! !! !|||:!! !|||:!!|||:!!||||||||| luPro---------AspTyrProArgLysLeuLysAlaAsnLeuIleLysCysIle 4394797 : AGCCC---------GATTATCCGCGAAAATTAAAAGCGAATCTGATCAAATGCATT : 4394841 257 : ArgHisHisGlnArgLeuSer{Ly} >>>> Target Intron 3 >>>> {s : 264 |||||||||||||||:!!! !{!!} 131 bp {. ArgHisHisGlnArgMetIle{As}++ ++{n 4394842 : CGCCATCACCAACGAATGATA{AA}gt.........................ag{C : 4394998 265 : }ValValLysAspValAsnSerLeuLeuIleProIleIlePheIleGlnLeuLeuT : 283 }||||||!!.|||||||||:::|||||| ||||||||||||!!:|||||||||| }ValValAsnAspValAsnAsnLeuLeuThrProIleIlePheMetGlnLeuLeuT 4394999 : }GTTGTGAACGacgtgaataatttattaacaccCATCATTTTCATGCAACTTCTTA : 4395053 284 : hrSerGlyValGlnIleCysLeuSerGlyPheAlaValLeuSerAsnAsnGlyGly : 301 ||||||||:!!:!!||||||||||||||||||||||||:!!..!|||..! !||| hrSerGlyIleGluIleCysLeuSerGlyPheAlaValIleAspAsnGlyThrGly 4395054 : CGAGCGGAATAGAGATTTGTTTGAGTGGATTCGCGGTGATCGATAACGGCACCGGT : 4395107 302 : AspAsnLeuLeuLysPheSerCysPheLeuSerSerValLeuValGlnLeuValMe : 320 !:!!|||||||||||| !! !!:!|||!!!|||:!! !|||||||||:!!:! ThrAspLeuLeuLysPheValSerTyrLeuThrSerMetGlyValGlnLeuLeuLe 4395108 : ACCGATCTTCTCAAATTTGTGTCTTATTTAACCTCGATGGGGGTGCAACTTTTGCT : 4395164 321 : tTyrCysTrpProGlyGluIleLeuIleGlnGluSerGlnGluValGlyTyrAlaA : 339 :!::|||||||||||||||||||||:!!||||||||| !|||:!!|||:!!!.!! uTrpCysTrpProGlyGluIleLeuValGlnGluSerLeuGluIleGlyHisValV 4395165 : ATGGTGTTGGCCTGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGTCATGTAG : 4395221 340 : laTyrLeuGlyValProTrpTyrGlnLeuProProAlaTyrArgArgGlnLeuMet : 357 .!||||||..!:!!|||||||||.!.||||||||| !|||!:!!:!|||||| alTyrLeuAsnIleProTrpTyrAsnLeuProProIleTyrGlnLysGlnLeuCys 4395222 : TCTATCTAAATATACCATGGTACAATTTACCACCGATTTATCAGAAACAACTTTGC : 4395275 358 : LeuIleIleLeuLysSerGlnAspGlyCysSerIleSerAlaLeuThrPheLysSe : 376 |||!!:|||:!!!:!:!!|||.!. !|||||||||!!!||||||||||||:!!!! LeuMetIleIleArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPheGlnTh 4395276 : CTGATGATCATTAGGGCCCAACAGTATTGCAGCATTACGGCATTAACGTTTCAAAC : 4395332 377 : rLeuGlyCysHisThrLeuThrSer >>>> Target Intron 4 >>>> Va : 385 !|||..! !||||||||||||:!! 471 bp || rLeuSerIleHisThrLeuThrAla++ ++Va 4395333 : GTTGTCTATTCACACGTTAACAGCCgt.........................agGT : 4395830 386 : lPheAsnThrGlySerSerTyrPheAlaLeuLeuArgLysMetGlnAspThr : 402 ||||||||||!.!:!!|||||||||.!!|||||||||:!!||||||.!.||| lPheAsnThrAlaAlaSerTyrPheThrLeuLeuArgGlnMetGlnGlnThr 4395831 : ATTCAATACAGCTGCTTCGTATTTTACTTTGCTGCGACAAATGCAGCAAACG : 4395883 vulgar: gi|383861644|ref|XP_003706295.1| 0 402 . KQ414784.1 4393578 4395883 + 993 M 73 219 S 0 1 5 0 2 I 0 307 3 0 2 S 1 2 M 82 246 G 0 6 M 17 51 S 0 2 5 0 2 I 0 185 3 0 2 S 1 1 M 65 195 G 3 0 M 21 63 S 0 2 5 0 2 I 0 127 3 0 2 S 1 1 M 120 360 5 0 2 I 0 467 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4393579 4395883 993 + . gene_id 1 ; sequence gi|383861644|ref|XP_003706295.1| ; gene_orientation + KQ414784.1 exonerate:protein2genome:local cds 4393579 4393798 . + . KQ414784.1 exonerate:protein2genome:local exon 4393579 4393798 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4393799 4393800 . + . intron_id 1 ; splice_site "GC" KQ414784.1 exonerate:protein2genome:local intron 4393799 4394109 . + . intron_id 1 KQ414784.1 exonerate:protein2genome:local splice3 4394108 4394109 . + . intron_id 0 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394110 4394416 . + . KQ414784.1 exonerate:protein2genome:local exon 4394110 4394416 . + . insertions 6 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4394417 4394418 . + . intron_id 2 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4394417 4394605 . + . intron_id 2 KQ414784.1 exonerate:protein2genome:local splice3 4394604 4394605 . + . intron_id 1 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394606 4394866 . + . KQ414784.1 exonerate:protein2genome:local exon 4394606 4394866 . + . insertions 0 ; deletions 3 KQ414784.1 exonerate:protein2genome:local splice5 4394867 4394868 . + . intron_id 3 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4394867 4394997 . + . intron_id 3 KQ414784.1 exonerate:protein2genome:local splice3 4394996 4394997 . + . intron_id 2 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394998 4395358 . + . KQ414784.1 exonerate:protein2genome:local exon 4394998 4395358 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4395359 4395360 . + . intron_id 4 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4395359 4395829 . + . intron_id 4 KQ414784.1 exonerate:protein2genome:local splice3 4395828 4395829 . + . intron_id 3 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4395830 4395883 . + . KQ414784.1 exonerate:protein2genome:local exon 4395830 4395883 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local similarity 4393579 4395883 993 + . alignment_id 1 ; Query gi|383861644|ref|XP_003706295.1| ; Align 4393579 1 219 ; Align 4394112 75 246 ; Align 4394364 157 51 ; Align 4394607 175 195 ; Align 4394802 243 63 ; Align 4394999 265 360 ; Align 4395830 385 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383861632|ref|XP_003706289.1| PREDICTED: putative odorant receptor 85e [Megachile rotundata] Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 1199 Query range: 0 -> 395 Target range: 4393578 -> 4395880 1 : MetGlyLysValAlaLysAspSerIleAspTyrTyrValLeuProAsnLysIleMe : 19 ||| !:!!:!!:!!|||! |||||||||||||||:!!|||||||||||||||.! MetLysGluLeuSerLysAlaSerIleAspTyrTyrIleLeuProAsnLysIlePh 4393579 : ATGAAAGAACTCTCTAAAGCGTCGATCGATTATTATATACTACCGAACAAGATCTT : 4393633 20 : tCysSerAlaIleGlyIleTrpProProAspGluGluGlnSerPheGlyGlyArgL : 38 .|||||| ! !|||!!:|||||| !||||||:!!...||| !!.!!!:!| eCysSerIleAlaGlyMetTrpProIleAspGluLysSerSerThrArgSerLysL 4393634 : TTGTAGTATAGCTGGAATGTGGCCTATCGACGAGAAAAGTTCAACGCGTAGCAAAC : 4393690 39 : euPheValGlyPheArgValValPheSerIleAlaAlaValCysThrIlePheVal : 56 |||||!.! !||||||:!!:!!|||.!!:!!.!!|||:!! !!!:!:!!|||||| euPheAlaTyrPheArgLeuIlePheGlyLeuThrAlaIleSerSerValPheVal 4393691 : TATTCGCATACTTCCGTCTGATATTCGGATTAACGGCAATCAGTAGTGTCTTCGTG : 4393744 57 : ProGluIleMetMetIleAlaValAsnTrpGlyAspLeuArgIleLeuThr{G} : 74 |||||||||||| !|||!.! !||||||||||||:!!|||||||||.!!{|} ProGluIleMetAlaIleValTrpAsnTrpGlyAspIleArgIleLeuAla{G}+- 4393745 : CCAGAAATTATGGCGATAGTGTGGAATTGGGGTGACATAAGAATCTTGGCA{G}gc : 4393799 75 : >>>> Target Intron 1 >>>> {ly}ValGlyCysValLeuThrThrValA : 83 311 bp {||}||||||||||||||||||||||||! ++{ly}ValGlyCysValLeuThrThrValG 4393800 : .........................ag{GA}GTAGGATGCGTTTTAACAACAGTCG : 4394136 84 : laGlnLeuIlePheLysMetIleTyrLeuIleAlaArgLysGluArgSerTyrLys : 101 .!||||||:::|||||||||||||||||||||||||||!:!!!:!:!!!!|||||| lyGlnLeuLeuPheLysMetIleTyrLeuIleAlaArgArgAspLysThrTyrLys 4394137 : GACagttattattcaaaatgATTTACCTAATAGCGAGAAGGGACAAAACGTACAAG : 4394190 102 : LeuTyrLysGluLeuArgSerLeuTrpAspSerSerHisAspSerLysGluArgGl : 120 |||! !!!.|||:!!|||..!||||||||||||||| !!||| !!||||||||||| LeuCysAsnGluIleArgAspLeuTrpAspSerSerAspAspProLysGluArgGl 4394191 : CTTTGCAACGAAATACGTGATCTATGGGATTCATCCGATGATCCAAAAGAAAGACA : 4394247 121 : nCysTyrGlnGlyLeuAlaTyrIleAlaArgAsnCysThrIleIleTyrHisThrS : 139 |! !|||:!!! !||||||:!! ||||||||| !|||||||||!:!:!!:!!| nSerTyrGluGluLeuAlaHisTrpAlaArgAsnLeuThrIleIlePheTyrSerS 4394248 : GTCCTACGAAGAGCTCGCTCATTGGGCAAGAAACCTTACGATAATCTTTTACTCGT : 4394304 140 : erGlyLeuLeuThrValAlaValPheThrValSerAlaValPheAspTyr<-><-> : 156 || !!:!!! !!.!||| !..!||||||:!!:!!|||!.!||||||||| erCysMetCysAsnValPheThrPheThrIleAlaAlaAlaPheAspTyrPheThr 4394305 : CCTGCATGTGCAACGTGTTCACATTCACGATTGCCGCAGCCTTCGATTATTTCACG : 4394358 157 : ValLysPheGlyGlnAspAsnAsnAlaAlaAsnArgHisLeuProTyrAspVal{T : 174 :!!:!!!:!.!! ..!:!! !! ! !!:!||||||||||||!:!!!:|||{| IleGluTyrSerValSerAspAlaAspLysSerArgHisLeuProPheGluVal{T 4394359 : ATCGAATACAGCGTCAGCGATGCTGATAAAAGTCGACACTTGCCCTTCGAAGTC{T : 4394415 175 : r} >>>> Target Intron 2 >>>> {p}TyrGlyThrAspValThrAspS : 182 |} 189 bp {|}||||||! !|||:!!||| | r}++ ++{p}TyrGlyIleAspIleThrProS 4394416 : G}gt.........................ag{G}TATGGAATAGACATCACACCGT : 4394628 183 : erProGlyPheGluIleAlaPheAlaCysGlnValLeuAlaAlaSerIleCysThr : 200 ||||| !!||||||||||||||| !||||||:!!:!!|||:!!! !||||||.!! erProArgPheGluIleAlaPheLeuCysGlnIleValAlaSerMetIleCysAla 4394629 : CTCCTCGCTTCGAGATCGCTTTCCTTTGTCAAATCGTAGCATCTATGATCTGCGCA : 4394682 201 : IleGlyValThrGlyLeuAspThrThrCysAlaThrSerIleLeuHisIleCysGl : 219 !!.!:!!:!!|||||||||.!!|||! ! !|||!!!|||||||||:!:! !|| AlaAlaIleSerGlyLeuAspAlaThrPheMetThrThrIleLeuHisValSerGl 4394683 : GCCGCGATCTCAGGCTTGGACGCGACGTTTATGACCACGATTCTACACGTGTCTGG : 4394739 220 : yGlnPheArgLeuMetCysMetTrpIleSerAsnIleGlyIleLysIleAsnCys< : 238 |||||||!:!|||!!: !! |||||||||!!.|||||||||:!!|||||| ! yGlnPheLysLeuIleAsnArgTrpIleSerLysIleGlyIleGluIleAsnIleG 4394740 : TCAATTCAAATTGATCAACAGATGGATCAGTAAGATTGGAATAGAGATAAATATCG : 4394796 239 : -><->AspSerProArgThrValThrThrAspLeuIleArgCysIleArgHisGln : 254 |||! !||||||! !:!!! !.!!:!!||||||!:!||||||||||||!!. luProAspTyrProArgLysLeuLysAlaAsnLeuIleLysCysIleArgHisHis 4394797 : AGCCCGATTATCCGCGAAAATTAAAAGCGAATCTGATCAAATGCATTCGCCATCAC : 4394850 255 : GlnArgLeuIle{Se} >>>> Target Intron 3 >>>> {r}AlaValLy : 262 ||||||:!!|||{!:} 131 bp {!}!.!|||!! GlnArgMetIle{As}++ ++{n}ValValAs 4394851 : CAACGAATGATA{AA}gt.........................ag{C}GTTGTGAA : 4395005 263 : sAspValAsnAsnLeuLeuThrProIleIlePheValGlnValLeuThrSerGlyI : 281 .|||||||||||||||||||||||||||||||||:!!|||:!!||||||||||||| nAspValAsnAsnLeuLeuThrProIleIlePheMetGlnLeuLeuThrSerGlyI 4395006 : CGacgtgaataatttattaacaccCATCATTTTCATGCAACTTCTTACGAGCGGAA : 4395062 282 : leValIleCysLeuCysGlyPheAlaValLeu<->ArgGlyThrGlyAspAspLeu : 298 ||! !||||||||| !!||||||||||||:!! !.!||||||||| !|||||| leGluIleCysLeuSerGlyPheAlaValIleAspAsnGlyThrGlyThrAspLeu 4395063 : TAGAGATTTGTTTGAGTGGATTCGCGGTGATCGATAACGGCACCGGTACCGATCTT : 4395116 299 : PheLysPheIleValTyrLeuThrAlaValMetIleGlnLeuMetPheTrpCysTr : 317 .!!||||||:!: !|||||||||:!!:!! !:!:||||||:!!.!.|||||||| LeuLysPheValSerTyrLeuThrSerMetGlyValGlnLeuLeuLeuTrpCysTr 4395117 : CTCAAATTTGTGTCTTATTTAACCTCGATGGGGGTGCAACTTTTGCTATGGTGTTG : 4395173 318 : pProGlyGluIleLeuIleGlnGluSerLeuGluValGlyTyrAlaValTyrLeuA : 336 ||||||||||||||||:!!|||||||||||||||:!!|||:!!!.!|||||||||| pProGlyGluIleLeuValGlnGluSerLeuGluIleGlyHisValValTyrLeuA 4395174 : GCCTGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGTCATGTAGTCTATCTAA : 4395230 337 : snIleProTrpTyrAsnMetGluProAlaCysArgArgGlnLeuLeuLeuValIle : 354 |||||||||||||||||:!: !||| !! !!:!!:!||||||! !|||:!!||| snIleProTrpTyrAsnLeuProProIleTyrGlnLysGlnLeuCysLeuMetIle 4395231 : ATATACCATGGTACAATTTACCACCGATTTATCAGAAACAACTTTGCCTGATGATC : 4395284 355 : LeuArgSerGlnAsnValCysSerIleSerAlaLeuThrPheArgThrValCysIl : 373 :!!|||:!!|||.!. !|||||||||!!!||||||||||||!:!|||:!!! !|| IleArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPheGlnThrLeuSerIl 4395285 : ATTAGGGCCCAACAGTATTGCAGCATTACGGCATTAACGTTTCAAACGTTGTCTAT : 4395341 374 : eHisSerLeuThrThr >>>> Target Intron 4 >>>> ValPheAsnAl : 382 ||||!!!||||||.!! 471 bp |||||||||.! eHisThrLeuThrAla++ ++ValPheAsnTh 4395342 : TCACACGTTAACAGCCgt.........................agGTATTCAATAC : 4395839 383 : aAlaAlaSerTyrPheThrLeuLeuArgGlnMetGluGlu : 395 !|||||||||||||||||||||||||||||||||:!!:!! rAlaAlaSerTyrPheThrLeuLeuArgGlnMetGlnGln 4395840 : AGCTGCTTCGTATTTTACTTTGCTGCGACAAATGCAGCAA : 4395880 vulgar: gi|383861632|ref|XP_003706289.1| 0 395 . KQ414784.1 4393578 4395880 + 1199 M 73 219 S 0 1 5 0 2 I 0 307 3 0 2 S 1 2 M 81 243 G 0 6 M 18 54 S 0 2 5 0 2 I 0 185 3 0 2 S 1 1 M 63 189 G 0 6 M 21 63 S 0 2 5 0 2 I 0 127 3 0 2 S 1 1 M 32 96 G 0 3 M 87 261 5 0 2 I 0 467 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4393579 4395880 1199 + . gene_id 1 ; sequence gi|383861632|ref|XP_003706289.1| ; gene_orientation + KQ414784.1 exonerate:protein2genome:local cds 4393579 4393798 . + . KQ414784.1 exonerate:protein2genome:local exon 4393579 4393798 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4393799 4393800 . + . intron_id 1 ; splice_site "GC" KQ414784.1 exonerate:protein2genome:local intron 4393799 4394109 . + . intron_id 1 KQ414784.1 exonerate:protein2genome:local splice3 4394108 4394109 . + . intron_id 0 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394110 4394416 . + . KQ414784.1 exonerate:protein2genome:local exon 4394110 4394416 . + . insertions 6 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4394417 4394418 . + . intron_id 2 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4394417 4394605 . + . intron_id 2 KQ414784.1 exonerate:protein2genome:local splice3 4394604 4394605 . + . intron_id 1 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394606 4394866 . + . KQ414784.1 exonerate:protein2genome:local exon 4394606 4394866 . + . insertions 6 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4394867 4394868 . + . intron_id 3 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4394867 4394997 . + . intron_id 3 KQ414784.1 exonerate:protein2genome:local splice3 4394996 4394997 . + . intron_id 2 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394998 4395358 . + . KQ414784.1 exonerate:protein2genome:local exon 4394998 4395358 . + . insertions 3 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4395359 4395360 . + . intron_id 4 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4395359 4395829 . + . intron_id 4 KQ414784.1 exonerate:protein2genome:local splice3 4395828 4395829 . + . intron_id 3 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4395830 4395880 . + . KQ414784.1 exonerate:protein2genome:local exon 4395830 4395880 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local similarity 4393579 4395880 1199 + . alignment_id 1 ; Query gi|383861632|ref|XP_003706289.1| ; Align 4393579 1 219 ; Align 4394112 75 243 ; Align 4394361 156 54 ; Align 4394607 175 189 ; Align 4394802 238 63 ; Align 4394999 260 96 ; Align 4395098 292 261 ; Align 4395830 379 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857773|ref|XP_003704378.1| PREDICTED: odorant receptor 46a, isoform A-like [Megachile rotundata] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 255 -> 336 Target range: 51729 -> 52032 256 : GluAsnMetAsnThrLysPheLeuIleValValLeuTyrThrCysSerMetLeuThrGln : 275 ||||||||| :::...|||.!!:!!:!!!!!|||..! !! !:!!:!! !||| GluAsnMetIlePheGlnIleLeuPheLeuLeuPheTyrValValTyrValMetLeuGln 51730 : GAAAACAtgattttccaaattctctTTTTGCTGTTCTACGTGGTTTACGTGATGCTACAA : 51787 276 : IlePheIleTyrCysTrpTyrGlyThrLysValLysMetLys >>>> Target Intr : 290 :!!|||:!:||||||!:: ||| !!:!:!!...:!::!! 60 bp LeuPheLeuTyrCysTyrValGlyGluArgLeuSerValGlu++ 51788 : TTATTCTTGTATTGTTACGTGGGTGAAAGGCTTTCCGTTGAGgt................ : 51834 291 : on 1 >>>> SerLeuGluValSerAspMetValPheArgThrAspTrpMetPhePheS : 306 |||:!!|||:!!:!!:!! !!.!!:! !:!!!!:||| !!!.| ++SerValGluIleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuS 51835 : .........agAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAATGGTACAATTTGT : 51940 307 : erLysAspValLysArgIleLeuTyrValIleMetArgArgAlaAsnValSerIleGluP : 326 || ! ! ! !!:!:!:||| :!!|||||||||||||||!..:!! !!:!!:!!. erProLysAsnAlaLysLeuLeuLeuIleIleMetArgArgAlaArgLeuProLeuGlnI 51941 : CTCCGAAAAATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGTTACCTCTACAAA : 52000 327 : heArgSerAlaHisValValSerMetAsnLeu : 336 !!! !:!!!.!... !!!.!!!!.!.!.!||| leThrAlaGlyArgPheAlaThrPheThrLeu 52001 : TCACTGCAGGTAGATTTGCTACTTTCACTCTG : 52032 vulgar: gi|383857773|ref|XP_003704378.1| 255 336 . KQ414804.1 51729 52032 + 126 M 34 102 5 0 2 I 0 56 3 0 2 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51730 52032 126 + . gene_id 1 ; sequence gi|383857773|ref|XP_003704378.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51730 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51730 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52032 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52032 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51730 52032 126 + . alignment_id 1 ; Query gi|383857773|ref|XP_003704378.1| ; Align 51730 256 102 ; Align 51892 290 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759031|ref|XP_012150706.1| PREDICTED: odorant receptor 67c-like [Megachile rotundata] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 819 Query range: 1 -> 250 Target range: 44077 -> 45138 2 : PheHisAlaAsnLeuPheTyrMetValAspLeuLysTyrValTyrGlyTrpAsnGlnTyr : 21 |||::: ||| |||:!!|||||||||||||||||||||||||||!!.||| PheTyrPhe***CysPheIleMetIleAspLeuLysTyrValTyrGlyTrpAsnHisTyr 44078 : ttttatttttaatgttttataatGATAGATTTGAAGTATGTGTACGGTTGGAACCATTAC : 44135 22 : ThrMetLysPheLeuGlyIleTrpProGluGluArgLysTrpAsnArgProSerSerTyr : 41 ||||||!:!|||:!!||||||||||||||||||||||||||||||!:!|||||||||||| ThrMetArgPheMetGlyIleTrpProGluGluArgLysTrpAsnGlnProSerSerTyr 44136 : ACCATGAGGTTCATGGGAATCTGGCCagaggaaagaaaatggaaCCAACCATCGAGTTAC : 44195 42 : LeuValPheValSerValLeuMetMetSerCysPheIleThrIleProGlnThrIleAsn : 61 |||!.!.!.:!! !!||||||||||||! ! !|||:!! !:!!||||||||||||||| LeuAlaLeuIleProValLeuMetMetPheLeuPheValCysValProGlnThrIleAsn 44196 : CTAGCTCTAATACCAGTTCTCATGATGTTTCTCTTCGTTTGTGTCCCACAAACGATCAAT : 44255 62 : PheProLeuIleTrpGlyAspMetAspLeuValValGluAsnLeuSerMetAlaAsnVal : 81 .!! !!!!!||||||||||||.!.:!!||||||||||||||||||||||||!.!|||:!! LeuSerPheIleTrpGlyAspPheAsnLeuValValGluAsnLeuSerMetGlyAsnIle 44256 : CTTTCATTCATCTGGGGTGATTTTAATTTAGTGGTAGAGAATCTATCCATGGGTAACATA : 44315 82 : ThrPheThrIleCysIleLeuLysAlaIleAlaPheTrpAsnAsnGlyLys{S} >>>> : 99 |||.!!||||||! !:!!||||||.!!||||||||||||! !|||||||||{ } ThrIleThrIleSerLeuLeuLysThrIleAlaPheTrpIleAsnGlyLys{P}++ 44316 : ACAATCACTATTTCCCTTCTGAAGACCATCGCTTTTTGGATCAACGGCAAA{C}gt.... : 44372 100 : Target Intron 1 >>>> {er}LeuLysSerLeuLeuGluCysMetAlaIleAsp : 110 314 bp {!!}|||||||||||||||:!!||||||||| !||| ++{ro}LeuLysSerLeuLeuLysCysMetAlaAspAsp 44373 : .....................ag{CA}CTGAAATCTCTGCTGAAATGCATGGCCGACGAT : 44716 111 : TrpSerThrThrLysSerProGluGlnArgGluThrMetLysIleIleAlaLysThrThr : 130 |||||||||..!..!!.! !!!:.!.! !!!:||||||!..! !||||||!:!! !||| TrpSerThrValSerLysLysAspAspLeuAspThrMetSerAsnIleAlaArgIleThr 44717 : TGGAGCACAGTATCGAAAAAAGATGATCTAGACACCATGAGTAACATCGCAAGGATCACC : 44776 131 : ArgThrMetValMetArgSerThrIleMetCysSerThrValValPheValTyrValPhe : 150 |||! !! :!!!!:!!!||||||:!::!:||| !! !||||||.!!..!|||:!!||| ArgLysThrIleIleSerSerThrValLeuCysHisIleValValIleThrTyrIlePhe 44777 : AGAAAGACTATAATAAGCAGCACAGTGTTATGTCACATTGTGGTCATCACTTATATATTT : 44836 151 : LeuArgCysLeuThrMetLysTyrAsnAspSerLysLeuPhePheArgAlaTyrPhePro : 170 ||||||! !||||||! !||||||!:!! !!!!!:!|||.!!|||||||||||||||||| LeuArgPheLeuThrArgLysTyrSerGlyThrArgLeuLeuPheArgAlaTyrPhePro 44837 : CTACGATTCCTCACCAGGAAGTACAGCGGCACCAGACTACTCTTCCGTGCTTATTTCCCT : 44896 171 : TyrAspValAsnValSerProAsnPheGlnLeuThrMetPheAlaGlnPheValAlaAla : 190 |||||| !:!!||||||||||||!:!:!!!!!|||:!!.!!||||||.!!:!!|||||| TyrAspSerAspValSerProAsnTyrGluPheThrValIleAlaGlnIleIleAlaAla 44897 : TACGACAGCGATGTCAGTCCAAATTACGAATTTACAGTGATTGCTCAAATCATAGCTGCT : 44956 191 : MetTyrGlyAlaIleThrTyrThrAlaValAspThrPheValAlaMetLeuIleLeuHis : 210 .!.|||!.!|||! !||||||||||||||||||||||||:!!!.!||||||||||||||| PheTyrAlaAlaThrThrTyrThrAlaValAspThrPheIleValMetLeuIleLeuHis 44957 : TTTTATGCAGCCACCACATACACAGCCGTCGATACTTTCATTGTAATGTTAATTCTGCAC : 45016 211 : ValCysGlyGlnLeuGluAsnLeuHisGlyAspIleLysArgLeuLeuSerSerGlnGlu : 230 |||||||||||||||..!||||||.....!!!:.!! !:!|||! !:!!!!!.!.:!! ValCysGlyGlnLeuSerAsnLeuArgAsnGluPheGlyLysLeuGlnAlaCysAspLys 45017 : GTTTGTGGACAACTTTCGAATTTGAGAAACGAATTCGGTAAGCTTCAAGCATGCGATAAA : 45076 231 : LysHisPheGluValGluValGlyLysIleValArgLysHisGluTyrLeuAsnArgPhe : 250 ! !!.:!!!.!:!!:!!||||||||||||!:!|||||||||||||||||||||||| ValThrLeuGlnAlaLysLeuGlyLysIleValGlnLysHisGluTyrLeuAsnArgPhe 45077 : GTAACATTACAGGCGAAGTTGGGGAAAATCGTGCAGAAACACGAATATCTTAACAGGTTC : 45136 vulgar: gi|805759031|ref|XP_012150706.1| 1 250 . KQ414804.1 44077 45138 + 819 M 97 291 S 0 1 5 0 2 I 0 310 3 0 2 S 1 2 M 151 453 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44078 45138 819 + . gene_id 1 ; sequence gi|805759031|ref|XP_012150706.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 44078 44369 . + . KQ414804.1 exonerate:protein2genome:local exon 44078 44369 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 44370 44371 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 44370 44683 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 44682 44683 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 44684 45138 . + . KQ414804.1 exonerate:protein2genome:local exon 44684 45138 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44078 45138 819 + . alignment_id 1 ; Query gi|805759031|ref|XP_012150706.1| ; Align 44078 2 291 ; Align 44686 100 453 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759031|ref|XP_012150706.1| PREDICTED: odorant receptor 67c-like [Megachile rotundata] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 435 Query range: 248 -> 376 Target range: 51506 -> 52050 249 : ArgPheAlaValThrIleLysAspCysPheAsnMetMetLeuLeuPheGlnMetIleGly : 268 |||||||||! !||||||:!! !|||||||||||||||||||||.!!||||||:!!||| ArgPheAlaGluThrIleGluArgCysPheAsnMetMetLeuLeuIleGlnMetLeuGly 51507 : AGGTTCGCAGAAACGATAGAGCGTTGTTTCAATATGATGCTTCTGATTCAGATGCTCGGT : 51564 269 : CysThrThrGlnLeuCysPheGlnCysPheGlnValIleMet >>>> Target Intr : 283 ||||||..!||||||||||||||||||||||||!.!:!!||| 100 bp CysThrValGlnLeuCysPheGlnCysPheGlnAlaValMet++ 51565 : TGTACCGTTCAGCTATGCTTCCAGTGTTTCCAAGCAGTCATGgt................ : 51611 284 : on 1 >>>> SerPheAspValGlnGluLysGluTyrLeuIleIleGlnIleSerPheL : 299 |||.!!|||! !:!! ! ! ||| !!:::|||...|||||| |||| ++SerIleAspGluGluIleAspGluAsnMetIlePheGlnIleLeuPheL 51612 : .........agTCAATTGACGAGGAAATAGATGAAAACAtgattttccaaattctctTTT : 51757 300 : euMetIleTyrValIleTyrValMetLeuHisLeuTyrLeuTyrCysTyrValGlyGluL : 319 ||:!!.!!||||||:!!||||||||||||!!.|||!:!|||||||||||||||||||||! euLeuPheTyrValValTyrValMetLeuGlnLeuPheLeuTyrCysTyrValGlyGluA 51758 : TGCTGTTCTACGTGGTTTACGTGATGCTACAATTATTCTTGTATTGTTACGTGGGTGAAA : 51817 320 : ysLeuArgAlaGlu >>>> Target Intron 2 >>>> SerLeuAspIleAlaAs : 329 :!||| !!.!||| 60 bp |||:!!!!:|||||||| rgLeuSerValGlu++ ++SerValGluIleAlaAs 51818 : GGCTTTCCGTTGAGgt.........................agAGCGTTGAAATAGCTAA : 51907 330 : nAlaValTyrAsnSerAsnTrpTyrAsnLeuProAlaLysAsnAlaLysLeuLeuIleLe : 349 ||||!.!|||:!!|||.!.|||||||||||| !! !!||||||||||||||||||:!!:! nAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLysAsnAlaLysLeuLeuLeuIl 51908 : CGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTGCTACTAAT : 51967 350 : uIleIleCysArgSerLysAsnProLeuGlnIleThrAlaGlyGlyPheCysSerPheTh : 369 !|||!!: ! |||:!!!:! ||||||||||||||||||||| !!|||..!!!!||||| eIleMetArgArgAlaArgLeuProLeuGlnIleThrAlaGlyArgPheAlaThrPheTh 51968 : TATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCAGGTAGATTTGCTACTTTCAC : 52027 370 : rLeuGluLeuTyrSerGlnVal : 376 |||| !||||||||||||||| rLeuMetLeuTyrSerGlnVal 52028 : TCTGATGCTGTATTCACAGGTa : 52050 vulgar: gi|805759031|ref|XP_012150706.1| 248 376 . KQ414804.1 51506 52050 + 435 M 34 102 5 0 2 I 0 96 3 0 2 M 41 123 5 0 2 I 0 56 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51507 52050 435 + . gene_id 2 ; sequence gi|805759031|ref|XP_012150706.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51507 51608 . + . KQ414804.1 exonerate:protein2genome:local exon 51507 51608 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51609 51610 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51609 51708 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51707 51708 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 51709 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51709 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 1 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52050 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52050 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51507 52050 435 + . alignment_id 2 ; Query gi|805759031|ref|XP_012150706.1| ; Align 51507 249 102 ; Align 51709 283 123 ; Align 51892 324 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759031|ref|XP_012150706.1| PREDICTED: odorant receptor 67c-like [Megachile rotundata] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 309 Query range: 154 -> 320 Target range: 36740 -> 37919 155 : ThrMetLysTyrAsnAspSerLysLeuPhePheArgAlaTyrPheProTyrAspValAsn : 174 ||| !:!!!:!|||! .!! !|||.!!.!!! !||| ||||||||||||..!||| ThrSerGluPheAsnValGlyGlyLeuLeuIleProAlaThrPheProTyrAspThrAsn 36741 : ACCTCGGAGTTCAACGTAGGAGGACTACTTATCCCGGCCACATTTCCATACGACACGAAT : 36798 175 : ValSerProAsnPheGlnLeuThrMetPheAlaGlnPheValAlaAlaMetTyrGlyAla : 194 !|||||||||!:!:!!:!!||| !.!!!.!|||||||||!.!.!!:!!! .!!||| LysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrValLeuSerAla 36799 : AAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCG : 36858 195 : IleThrTyrThrAlaValAspThrPheValAlaMetLeuIleLeuHisValCysGlyGln : 214 ||| !|||:!!..! !!|||||||||||||||:!:|||:!:||||||:!!||||||||| IleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHisIleCysGlyGln 36859 : ATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAA : 36918 215 : LeuGluAsnLeuHisGlyAspIleLysArgLeuLeuSerSerGlnGluLys<-><-><-> : 232 ||| !|||!.! !! !:!!:!!!.!||| !!:!!!! ! !||| LeuThrValLeuArgIleAlaLeuGluAsnLeuAlaAsnThrThrIleLysAspAsnTyr 36919 : TTAACTGTTCTCCGCATTGCCCTCGAGAATCTTGCTAACACGACAATAAAAGACAACTAC : 36978 233 : <->HisPheGluValGluValGlyLysIleValArgLysHisGluTyrLeuAsn{Ar} : 249 ! |||:!!! !..!:!!||| ! ||||||!.!!:!!!..!. ! ||| !{||} SerLysPheGlnGluArgLeuGlyTyrIleValHisArgGlnAsnGlnLeuPhe{Ar}++ 36979 : AGCAAGTTCCAAGAACGATTAGGATACATTGTGCACAGGCAGAATCAATTGTTC{AG}gt : 37037 250 : >>>> Target Intron 1 >>>> {g}PheAlaValThrIleLysAspCysPheAsn : 259 534 bp {|}::!||||||! !:!::!!|||||||||||| ++{g}TyrAlaValIleValGluAspCysPheAsn 37038 : .........................ag{g}taCGCTGTGATAGTGGAAGATTGCTTCAAC : 37599 260 : MetMetLeuLeuPheGlnMetIleGlyCysThrThrGlnLeuCysPheGlnCysPheGln : 279 !!:||||||||| !!|||! :!! !||||||.!!..!||||||.!. ! !:!!:: IleMetLeuLeuValGlnThrLeuMetCysThrAlaMetLeuCysMetThrGlyTyrArg 37600 : ATCATGCTGCTCGTTCAAACTTTAATGTGCACCGCCATGCTCTGTATGACTGGATATCGC : 37659 280 : ValIleMet >>>> Target Intron 2 >>>> SerPheAspValGlnGluLysG : 290 :!!!!:! 135 bp ||| !!:!! !:!!:!!:!!! MetMetThr++ ++SerValAsnGlnGluGlnGluA 37660 : ATGATGACCgt.........................agTCTGTTAATCAGGAGCAAGAGG : 37827 291 : luTyrLeuIleIleGlnIleSerPheLeuMetIleTyrValIleTyrValMetLeuHisL : 310 !: ! !|||||| ::: |||...::: :!!|||! !|||..!|||||||||| spValProIleIleGlyValIlePhePheIleSerHisValThrTyrThrMetLeuHisL 37828 : ATGTACCGATTATTggagtaatattttttatctcaCACGTGACCTATACCATGTTAcatc : 37887 311 : euTyrLeuTyrCysTyrValGlyGluLysLeu : 320 ||::::::||||||||||||||||||! !||| euPheIleTyrCysTyrValGlyGluThrLeu 37888 : tatttatttattgctacgtGGGCGAAACACTT : 37919 vulgar: gi|805759031|ref|XP_012150706.1| 154 320 . KQ414804.1 36740 37919 + 309 M 77 231 G 0 12 M 17 51 S 0 2 5 0 2 I 0 530 3 0 2 S 1 1 M 33 99 5 0 2 I 0 131 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36741 37919 309 + . gene_id 3 ; sequence gi|805759031|ref|XP_012150706.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 36741 37036 . + . KQ414804.1 exonerate:protein2genome:local exon 36741 37036 . + . insertions 12 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 37037 37038 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 37037 37570 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 37569 37570 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 37571 37670 . + . KQ414804.1 exonerate:protein2genome:local exon 37571 37670 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 37671 37672 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 37671 37805 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 37804 37805 . + . intron_id 1 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 37806 37919 . + . KQ414804.1 exonerate:protein2genome:local exon 37806 37919 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36741 37919 309 + . alignment_id 3 ; Query gi|805759031|ref|XP_012150706.1| ; Align 36741 155 231 ; Align 36984 232 51 ; Align 37572 250 99 ; Align 37806 283 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759031|ref|XP_012150706.1| PREDICTED: odorant receptor 67c-like [Megachile rotundata] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 277 Query range: 248 -> 376 Target range: 33631 -> 34543 249 : ArgPheAlaValThrIleLysAspCysPheAsnMetMetLeuLeuPheGlnMetIleGly : 268 |||||||||..!! !|||:!!||||||||||||! :!!||||||.!!||||||:!: ! ArgPheAlaThrMetIleGluAspCysPheAsnThrLeuLeuLeuIleGlnMetLeuLeu 33632 : aGGTTCGCAACTATGATCGAGGATTGTTTCAACACATTGCTATTAATTCAGATGCTGCTC : 33689 269 : CysThrThrGlnLeuCysPheGlnCysPheGlnValIleMet >>>> Target Intr : 283 ||||||..!:!!:!!||||||||| !!||| ! !!.!! 74 bp CysThrValGluIleCysPheGlnGlyPheLeuPhePheAsp++ 33690 : TGTACCGTCGAAATATGCTTTCAAGGCTTTTTATTCTTCGATgt................ : 33736 284 : on 1 >>>> SerPheAspValGlnGluLysGluTyrLeuIleIleGlnIleSerPheL : 299 !.!. ! !.!.||||||! ! !!!! !:!:|||:!: !|||! ++ValIleLeuGluAsnGluLysGlyIlePheAsnValGlnLeuLeuPheP 33737 : .........agGTGATACTAGAAAACGAGAAAGGAATATTCAACGTGCAATTGCTTTTCT : 33856 300 : euMetIleTyrValIleTyrValMetLeuHisLeuTyrLeuTyrCysTyrValGlyGluL : 319 !!:!!:!:!:!||| !!:!:!!:!::!!|||:!!|||:!!|||||||||:!!||||||! heValLeuPheValCysPheIleLeuValHisIleTyrIleTyrCysTyrIleGlyGluM 33857 : TCGTGCTGTTCGTATGCTTCATCCTTGTACACATCTACATTTATTGTTACATAGGAGAGA : 33916 320 : ysLeuArgAlaGlu >>>> Target Intron 2 >>>> SerLeuAspIleAlaAs : 329 !|||! !.!!.!. 454 bp ||| !!!:!!:::!|| etLeuLeuThrHis+- ++SerArgGluMetSerAs 33917 : TGCTACTCACACATgc.........................agAGCAGAGAAATGAGCAA : 34400 330 : nAlaValTyrAsnSerAsnTrpTyrAsnLeuProAlaLysAsnAlaLysLeuLeuIleLe : 349 |:!!!.!|||.!.|||||||||||||||:!! !! !! !.!.||||||! !|||:!!!! nSerAlaTyrGluSerAsnTrpTyrAsnValSerProProGluAlaLysCysLeuLeuPh 34401 : TTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCAGAAGCCAAGTGCCTTTTATT : 34460 350 : uIleIleCysArgSerLysAsnProLeuGlnIleThrAlaGlyGlyPheCysSerPheTh : 369 !|||!!: !|||!!! ..!|||||| :!:||||||||| !||| !!!!!|||:! eIleMetHisArgThrAlaArgProLeuCysLeuThrAlaGlyLysPheSerThrPheSe 34461 : TATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCAGGAAAATTCAGTACCTTCTC : 34520 370 : rLeuGluLeuTyrSerGlnVal : 376 !:!!|||:!!!:!||| ||| rMetGluMetPheSerThrVal 34521 : CATGGAAATGTTCAGTACTGTA : 34543 vulgar: gi|805759031|ref|XP_012150706.1| 248 376 . KQ414804.1 33631 34543 + 277 M 34 102 5 0 2 I 0 70 3 0 2 M 41 123 5 0 2 I 0 450 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33632 34543 277 + . gene_id 4 ; sequence gi|805759031|ref|XP_012150706.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33632 33733 . + . KQ414804.1 exonerate:protein2genome:local exon 33632 33733 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33734 33735 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 33734 33807 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 33806 33807 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 33808 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33808 33930 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 2 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 1 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34543 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34543 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33632 34543 277 + . alignment_id 4 ; Query gi|805759031|ref|XP_012150706.1| ; Align 33632 249 102 ; Align 33808 283 123 ; Align 34385 324 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759031|ref|XP_012150706.1| PREDICTED: odorant receptor 67c-like [Megachile rotundata] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 158 -> 236 Target range: 31320 -> 31554 159 : AsnAspSerLysLeuPhePheArgAlaTyrPheProTyrAspValAsnValSerProAsn : 178 .!.||| !! !|||.!.!:!! !!.!|||||||||!:!|||:!!..! !! ! ! GlnAspArgLeuLeuLeuTyrProGlyTyrPheProPheAspIleArgProIleGlyVal 31321 : CAGGATCGTCTGCTCCTGTACCCTGGCTATTTTCCCTTCGATATTCGTCCAATAGGGGTA : 31378 179 : PheGlnLeuThrMetPheAlaGlnPheValAlaAlaMetTyrGlyAlaIleThrTyrThr : 198 .!.! !! !|||! |||!.!||| ! :!!|||||| ! !!.!!.!|||!:!|||||| LeuLeuSerThrAsnPheGlyGlnValLeuAlaAlaTyrSerAlaValIleSerTyrThr 31379 : CTACTGTCGACCAATTTTGGCCAAGTGCTCGCAGCGTATTCCGCTGTTATCAGTTACACC : 31438 199 : AlaValAspThrPheValAlaMetLeuIleLeuHisValCysGlyGlnLeuGluAsnLeu : 218 .!!||||||||||||:!!||||||||||||:!!|||:!!|||||||||!!!|||! ||| ThrValAspThrPheIleAlaMetLeuIleMetHisIleCysGlyGlnPheGluIleLeu 31439 : ACCGTGGATACATTTATCGCGATGCTGATAATGCACATATGCGGACAATTTGAGATACTG : 31498 219 : HisGlyAspIleLysArgLeuLeuSerSerGlnGluLysHisPheGluValGlu : 236 ... ! ! :!!::!||||||:!!..!..!:!!:!!||| ! ...|||!!: ArgGlnLysLeuArgArgLeuMetAspAspGluLysLysThrArgSerValAsp 31499 : AGACAGAAATTACGAAGGCTGATGGATGACGAGAAGAAGACCAGAAGCGTGGAT : 31554 vulgar: gi|805759031|ref|XP_012150706.1| 158 236 . KQ414804.1 31320 31554 + 164 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31321 31554 164 + . gene_id 5 ; sequence gi|805759031|ref|XP_012150706.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31321 31554 . + . KQ414804.1 exonerate:protein2genome:local exon 31321 31554 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 31321 31554 164 + . alignment_id 5 ; Query gi|805759031|ref|XP_012150706.1| ; Align 31321 159 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759031|ref|XP_012150706.1| PREDICTED: odorant receptor 67c-like [Megachile rotundata] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 11 -> 96 Target range: 30788 -> 31046 12 : LeuLysTyrValTyrGlyTrpAsnGlnTyrThrMetLysPheLeuGlyIleTrpProGlu : 31 |||||| !.! !|||||||||!::!::!.!|||:!!.!.:!!||||||||||||||| LeuLysValAlaLeuGlyTrpAsnArgTrpAsnMetGluLeuValGlyIleTrpProGlu 30789 : TTGAAGGTAGCACTTGGATGGAACCGTTGGAACATGGAACTGGTTGGAATTTGGCCAGAA : 30846 32 : <->GluArgLysTrpAsnArgProSerSerTyrLeuValPheValSerValLeuMetMet : 50 ...|||... .!.||| ! !!!:!!:! !!.!!!.:!!! !:!!!!!:::::: ProSerArgSerAspGlnArgTrpProAsnPheLysAlaLeuLeuPheIlePheValIle 30847 : CCGAGCAGATCTGATCAACGATGGCCGAATTTCAAGGCTTTGCTGTTCATTTTTGtgata : 30906 51 : SerCysPheIleThrIleProGlnThrIleAsnPheProLeuIleTrpGlyAspMetAsp : 70 ||| ||| !||||||!:!:!:|||.!.! !!!!||||||||||||:!:! IlePhePheGlyThrGlyProGlnSerValAsnLeuLeuPheIleTrpGlyAspLeuGly 30907 : atattttttggaaCCGGACCTCAGAGCGTGAATCTACTTTTCATATGGGGAGACCTTGGA : 30966 71 : LeuValValGluAsnLeuSerMetAlaAsnValThrPheThrIleCysIleLeuLysAla : 90 ||||||..!||||||||||||! !||||||:!! !! !! !! !..!!!::!!||| ! LeuValThrGluAsnLeuSerThrAlaAsnIleProGlyIleAsnAlaMetMetLysLeu 30967 : TTGGTCACGGAAAATCTGTCCACGGCTAATATTCCCGGCATAAACGCCATGATGAAACTG : 31026 91 : IleAlaPheTrpAsnAsn : 96 ||| ! !|||:!!:!! IleIleAlaTrpHisHis 31027 : ATTATCGCCTGGCATCAC : 31046 vulgar: gi|805759031|ref|XP_012150706.1| 11 96 . KQ414804.1 30788 31046 + 160 M 20 60 G 0 3 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 30789 31046 160 + . gene_id 6 ; sequence gi|805759031|ref|XP_012150706.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 30789 31046 . + . KQ414804.1 exonerate:protein2genome:local exon 30789 31046 . + . insertions 3 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 30789 31046 160 + . alignment_id 6 ; Query gi|805759031|ref|XP_012150706.1| ; Align 30789 12 60 ; Align 30852 32 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759031|ref|XP_012150706.1| PREDICTED: odorant receptor 67c-like [Megachile rotundata] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 323 -> 376 Target range: 39965 -> 40124 324 : SerLeuAspIleAlaAsnAlaValTyrAsnSerAsnTrpTyrAsnLeuProAlaLysAsn : 343 ||| !! |||!.!.!.:!!!.!|||:!!!!!|||||||||:!!|||||| !!|||:!! SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 344 : AlaLysLeuLeuIleLeuIleIleCysArgSerLysAsnProLeuGlnIleThrAlaGly : 363 ||| ! !|||:!!:!!:!:|||||||||:!!:!! !!!!!||||||||||||||| AlaValSerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGly 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGA : 40083 364 : GlyPheCysSerPheThrLeuGluLeuTyrSerGlnVal : 376 !||| !! !!|||:!!|||||||||!:!!:! ||| LysPheSerProPheSerLeuGluLeuPheAsnAlaVal 40084 : AAATTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTGTG : 40124 vulgar: gi|805759031|ref|XP_012150706.1| 323 376 . KQ414804.1 39965 40124 + 136 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40124 136 + . gene_id 7 ; sequence gi|805759031|ref|XP_012150706.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39966 40124 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40124 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39966 40124 136 + . alignment_id 7 ; Query gi|805759031|ref|XP_012150706.1| ; Align 39966 324 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383861632|ref|XP_003706289.1| PREDICTED: putative odorant receptor 85e [Megachile rotundata] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 109 -> 224 Target range: 31155 -> 31500 110 : TrpAspSerSerHisAspSerLysGluArgGlnCysTyrGlnGlyLeuAlaTyrIleAla : 129 ||| ! !!!|||... ...:::|||:::::: ! ! ! !||| ! .!!||| TrpLysThrSerArgThrLysGluGluLysGluThrMetLeuLysArgAlaLysPheAla 31156 : TGGAAAACCTCAAGGACcaaggaggagaaggagacCATGTTGAAGAGAGCCAAATTTGCG : 31213 130 : ArgAsnCysThrIleIleTyrHisThrSerGlyLeuLeuThrValAlaValPheThrVal : 149 !:!.!. !:!!||| ! ! ..!! ! !||| !! !|||.!!|||!:! ! ! LysGlnIleSerIleTrpCysSerValLeuThrLeuThrMetValThrValTyrLeuSer 31214 : AAACAAATTTCCATCTGGTGCTCAGTATTAACCTTGACCATGGTCACTGTTTATCTAAGT : 31273 150 : SerAlaValPheAspTyrValLysPheGlyGlnAspAsnAsnAlaAlaAsnArgHisLeu : 169 ! !!.!!:: ! ! !:!!.!!! !::!! |||.!. ! !:!!|||! ||| LeuArgAlaTrpIleIleTyrGlnLeuAspArgAlaAsnGlnLysGlnAspArgLeuLeu 31274 : CTTCGAGCGTGGATCATCTACCAGCTTGATAGGGCAAACCAGAAACAGGATCGTCTGCTC : 31333 170 : ProTyrAspValTrpTyrGlyThrAspValThrAspSerProGlyPheGluIleAlaPhe : 189 ! !||| !! !!::!:! ! !|||:!! ! ! ! !! !.!. ! .!! ! LeuTyrProGlyTyrPheProPheAspIleArgProIleGlyValLeuLeuSerThrAsn 31334 : CTGTACCCTGGCTATTTTCCCTTCGATATTCGTCCAATAGGGGTACTACTGTCGACCAAT : 31393 190 : AlaCysGlnValLeuAlaAlaSerIleCysThrIleGlyValThrGlyLeuAspThrThr : 209 ! !!|||||||||||||||! ! !..!..!|||.!! !||| !:!!|||||| ! PheGlyGlnValLeuAlaAlaTyrSerAlaValIleSerTyrThrThrValAspThrPhe 31394 : TTTGGCCAAGTGCTCGCAGCGTATTCCGCTGTTATCAGTTACACCACCGTGGATACATTT : 31453 210 : CysAlaThrSerIleLeuHisIleCysGlyGlnPheArgLeuMet : 224 !|||! ! !|||:!!||||||||||||||||||..!:!!:!! IleAlaMetLeuIleMetHisIleCysGlyGlnPheGluIleLeu 31454 : ATCGCGATGCTGATAATGCACATATGCGGACAATTTGAGATACTG : 31500 vulgar: gi|383861632|ref|XP_003706289.1| 109 224 . KQ414804.1 31155 31500 + 100 M 115 345 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31156 31500 100 + . gene_id 1 ; sequence gi|383861632|ref|XP_003706289.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31156 31500 . + . KQ414804.1 exonerate:protein2genome:local exon 31156 31500 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 31156 31500 100 + . alignment_id 1 ; Query gi|383861632|ref|XP_003706289.1| ; Align 31156 110 345 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383861634|ref|XP_003706290.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 105 -> 236 Target range: 36572 -> 36965 106 : LeuArgSerLeuTrpAspSerThrAspAspProThrGluMetGlnCysTyrGlnAspLeu : 125 :!!!!!..!:!!!::|||..! !! !!:|||! ! ! ! ! ! !!!. :!! MetSerGlnIlePheAspAspTrpAlaGluProIleProGluValAspArgHisThrMet 36573 : ATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACGATG : 36630 126 : AlaHisValAlaArgThrCysThrIleThrPheTyrSerCysGlyAlaLeuThrSerIle : 145 ! ! ..!|||!:!! ! !! !!!:! !! ! !|||..! !||||||! !:!! LeuLysThrAlaLysIleSerArgMetIleSerIleValCysSerIleLeuThrTyrVal 36631 : CTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTCTGTTCTATCCTGACGTATGTC : 36690 146 : ValPheIleIleSerAlaAlaLeuGluCysMetAsnValAspValSerAsnGlyThrAsp : 165 :!! !!:!: !! ! !:!!|||:!! ! !!:! ! !!:!!.!..! ! ! MetValLeuAlaPheLeuSerLeuGlnIleTrpSerSerMetGlnAsnThrSerGluPhe 36691 : ATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGCAGCATGCAAAACACCTCGGAGTTC : 36750 166 : SerIleArgProLeuProPheGluValTrpTyrGlyIleAspValSerGluSerProArg : 185 !:!:!! !! !|||! !.!! !!.! !:! ! !|||..!!:!:!!||||||!.! AsnValGlyGlyLeuLeuIleProAlaThrPheProTyrAspThrAsnLysSerProAsn 36751 : AACGTAGGAGGACTACTTATCCCGGCCACATTTCCATACGACACGAATAAAAGTCCTAAT : 36810 186 : PheGluValValPheValCysGlnAlaLeuAlaSerThrIleCysAlaValAlaIleCys : 205 !:!|||:!!..!!:::!! ! ||| !:!!!.!!!!..!:!: !!|||:!!..! !! ! TyrGluIleThrTrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSer 36811 : TACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCC : 36870 206 : SerLeuAspThrAlaCysValThrAlaIleLeuHisValCysGlyGlnPheLysLeuIle : 225 !!!!!!|||||| ! !!.!..! !:!:||||||:!!|||||||||!!.! :!!:!! CysPheAspThrPheValAlaValLeuValLeuHisIleCysGlyGlnLeuThrValLeu 36871 : TGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACTGTTCTC : 36930 226 : SerValTrpIleSerHisIleGlyPheGluThr : 236 !!:!! :!!..!:!!:!!!.! ! !||| ArgIleAlaLeuGluAsnLeuAlaAsnThrThr 36931 : CGCATTGCCCTCGAGAATCTTGCTAACACGACA : 36965 vulgar: gi|383861634|ref|XP_003706290.1| 105 236 . KQ414804.1 36572 36965 + 102 M 131 393 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36573 36965 102 + . gene_id 1 ; sequence gi|383861634|ref|XP_003706290.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36573 36965 . + . KQ414804.1 exonerate:protein2genome:local exon 36573 36965 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36573 36965 102 + . alignment_id 1 ; Query gi|383861634|ref|XP_003706290.1| ; Align 36573 106 393 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754615|ref|XP_012138734.1| PREDICTED: odorant receptor 24a-like [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 136 -> 208 Target range: 485719 -> 485932 137 : SerValLeuAspValIleLeuProLeuAsnGluThrArgProArgGlnGlnLeuPheA : 156 |||:!!||||||:!!:!::!!||||||||| ! |||||||||||| ! ! !.!.| SerIleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleA 485720 : AGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAA : 485777 157 : snValGluTyrLeuPhePheAspLysAspGluTyrTyrTyrSerValTyrLeuGlnLe : 175 || !|||:!! ||| !!|||:!!.!.:!!|||!:!||| !!:!! !!!.:! snSerGluHis---PheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisVa 485778 : ACTCGGAACAT---TTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGT : 485831 176 : uSerTrpSerThrPheValIleValMetValIleGlyPheValAspSerLeuTyrIle : 194 ! ! ! !..!.!!:!! !!.!!!:|||:!! ! !...::: ||| ::: lValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMet 485832 : TGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatg : 485888 195 : IleIleIleHisHisSerSerGlyLeuPheAlaValCysGly : 208 ||||||!!.|||!!!!!!||||||!:!.!!:!! !||| AlaIleIleGlnHisThrCysGlyLeuTyrThrIleValGly 485889 : gCGATAATACAGCACACCTGTGGTTTGTATACAATCGTTGGG : 485932 vulgar: gi|805754615|ref|XP_012138734.1| 136 208 . KQ414815.1 485719 485932 + 111 M 23 69 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485720 485932 111 + . gene_id 1 ; sequence gi|805754615|ref|XP_012138734.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485720 485932 . + . KQ414815.1 exonerate:protein2genome:local exon 485720 485932 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 485720 485932 111 + . alignment_id 1 ; Query gi|805754615|ref|XP_012138734.1| ; Align 485720 137 69 ; Align 485789 161 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754615|ref|XP_012138734.1| PREDICTED: odorant receptor 24a-like [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 121 -> 206 Target range: 481983 -> 482235 122 : IleLeuSerSerMetThrIlePheLeuSerValThrLeuLeuProSerValLeuAspV : 141 |||! ! !!|||:!! !|||.!.:!! ! ! !:!!! ! !! !|||||||||| IleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspV 481984 : ATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACG : 482041 142 : alIleLeuProLeuAsnGluThrArgProArgGlnGlnLeuPheAsnValGluTyrLe : 160 |||||:!!|||||||||||||||||| !!!.!||| ! ! ! ::::!!|||||| alIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMetGluTyr-- 482042 : TCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTAC-- : 482098 161 : uPhePheAspLysAspGluTyrTyrTyrSerValTyrLeuGlnLeuSerTrpSerThr : 179 |||.!!|||:!!.!.:!!|||! !! !:!! !!!!!.! !!!!!::||| ! -PheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPhe 482099 : -TTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTT : 482152 180 : PheValIleValMetValIleGlyPheValAspSerLeuTyrIleIleIleIleHisH : 199 .!!|||:!!!.!! !:!!|||! ! :!!!!:!!!||| !:!!!!: :!!.!.| LeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluH 482153 : CTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAAC : 482212 200 : isSerSerGlyLeuPheAlaVal : 206 ||:!!:!!.!!||||||.!!:!! isAlaAlaSerLeuPheThrLeu 482213 : ACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: gi|805754615|ref|XP_012138734.1| 121 206 . KQ414815.1 481983 482235 + 107 M 38 114 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481984 482235 107 + . gene_id 2 ; sequence gi|805754615|ref|XP_012138734.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481984 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481984 482235 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 481984 482235 107 + . alignment_id 2 ; Query gi|805754615|ref|XP_012138734.1| ; Align 481984 122 114 ; Align 482098 161 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 737 Query range: 147 -> 394 Target range: 17818 -> 19897 148 : ValValGluAsnIleGlyArgAsnGluSerAspArgValPheProPheAsnValTrpLeu : 167 :!!:!: |||||||||:::|||||||||!!:|||:!!.!!|||||||||:!!|||:!! IleLeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpVal 17819 : ATTTTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTC : 17876 168 : AspValProGluIleThrLeuThrProTyrPheGluIleIleSerAlaIleGlu >>>> : 186 :!!:!!||| :!!:!!:!!|||||||||!:!|||||| :::::::!! AsnLeuPro---LeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln++ 17877 : AACTTGCCA---TTATCAATGACGCCATATTACgaaataactttttcattaCAGgt.... : 17932 187 : Target Intron 1 >>>> ValLeuAlaLeuCysHisValGlyValCysTyrLeuC : 198 110 bp ||||||:!!|||! !|||:!!|||||| !!|||!!!| ++ValLeuSerLeuTyrHisIleGlyValSerTyrPheC 17933 : .....................aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCT : 18076 199 : ysPheAspAsnPheLeuCysLeuMetAsnLeuHisAlaAlaCysGlnPheArgIleLeuG : 218 ||||||||||||||||||||::!|||||||||||||||||| !|||||||||:!!|||| ysPheAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuG 18077 : gcttcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGC : 18136 219 : lnHisArgLeuSerLysValTyrValIleHisGluLysGluLysAspHisLeu{T} >> : 236 ||:!!|||:!!:!!!!.:!! !! !:!! ! !::||||||::: ... {|} lnTyrArgMetAlaAsnMetThrAspLeuLysAspLysGluArgLysGluArg{T}-+ 18137 : AATACCGAATGGCGAATATGACCGATTTAAAGGacaaagagaggaaagagaga{a}at.. : 18193 237 : >> Target Intron 2 >>>> {hr}ValLysTyrTyrAspThrLeuArgGlyTyrP : 247 33 bp {||}..!:!!! !|||:!!..!|||!:!! !|||. -+{hr}ThrGluCysTyrAsnValLeuLysAspTyrI 18194 : .......................tg{CA}ACAGAATGTTACAACGTTCTCAAAGATTATA : 18256 248 : heLysGlnHisGlnThrLeuIleAlaTyrCysAspLysPheGluGluAlaPheSerValM : 267 !!!:!|||||||||!.!|||||||||||||||:!!|||.!!|||:!!!.!|||!:!:!!! leArgGlnHisGlnAsnLeuIleAlaTyrCysAsnLysLeuGluLysValPheAsnIleI 18257 : TCAGACAGCATCAGAACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGTTCAATATCA : 18316 268 : etValLeuAlaGlnValLeuLeuPheSerLeuLeuIleCysLeuAspGlyPheLeuValL : 287 !:||||||!.!|||:!!|||:!!||||||:!!|||||||||||||||||||||! !:!!| leValLeuGlyGlnLeuLeuMetPheSerMetLeuIleCysLeuAspGlyPheGlnIleL 18317 : TTGTTCTGGGGCAATTGTTAATGTTCAGCATGTTGATCTGTCTCGATGGATTTCAGATAC : 18376 288 : euMet >>>> Target Intron 3 >>>> AspAspAlaProAsnMetArgArgVa : 297 ||||| 975 bp ! :!!.!!|||!.!! ! !|||:! euMet++ ++AlaAsnThrProThrArgThrArgLe 18377 : TTATGgt.........................agGCAAATACACCTACCAGAACCCGACT : 19381 298 : lIlePheAlaPheHisLeuMetCysCysIleCysGlnLeuLeuMetPheThrTyrSerCy : 317 !|||||| !||||||:!! ...|||!!:||||||||||||||||||||||||||||| uIlePheIlePheHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSerCy 19382 : GATTTTCATCTTTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGCTG : 19441 318 : sAspCysLeuIleArgGluSerLeuAspValAlaThrAlaValTyrAsnSerProTrpTh : 337 |||||||:!!|||||||||||| !..!..!||| !|||||||||!:!.!!|||||||| sAspCysIleIleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyProTrpTh 19442 : CGACTGCATCATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGAC : 19501 338 : rValValProHisAspAsnMetGlyLysMetValArgLysAspLeuValLeuMetIleLe : 357 |:!!:!!||| ..! |||||||||:!!||||||||||||:!!|||:!:|||:! rLeuLeuProMetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuValIleMe 19502 : ACTTTTACCAATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCAT : 19561 358 : uArgSerArgValProCysCysIleThrAlaSerGlyPhePheValValSerLeuGluTh : 377 !||||||!!!||||||||||||:!:||||||!!!|||||||||||||||||||||||||| tArgSerSerValProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGluTh 19562 : GAGATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAAC : 19621 378 : rTyrThrArg >>>> Target Intron 4 >>>> ValLeuSerThrAlaValSer : 387 ||||||| !! 223 bp |||||||||||||||!.!||| rTyrThrGly++ ++ValLeuSerThrAlaAlaSer 19622 : GTACACAGGGgt.........................agGTTTTAAGCACCGCAGCCTCA : 19874 388 : TyrPheThrLeuLeuAsnGln : 394 |||||||||||||||!!.||| TyrPheThrLeuLeuLysGln 19875 : TACTTTACGTTGCTGAAGCAA : 19897 vulgar: gi|383857333|ref|XP_003704159.1| 147 394 . KQ414828.1 17818 19897 + 737 M 23 69 G 1 0 M 14 42 5 0 2 I 0 106 3 0 2 M 50 150 S 0 1 5 0 2 I 0 29 3 0 2 S 1 2 M 52 156 5 0 2 I 0 971 3 0 2 M 92 276 5 0 2 I 0 219 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17819 19897 737 + . gene_id 1 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17819 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17819 17929 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18190 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18190 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18191 18192 . + . intron_id 2 ; splice_site "at" KQ414828.1 exonerate:protein2genome:local intron 18191 18223 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 18222 18223 . + . intron_id 1 ; splice_site "TG" KQ414828.1 exonerate:protein2genome:local cds 18224 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18224 18381 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19897 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19897 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17819 19897 737 + . alignment_id 1 ; Query gi|383857333|ref|XP_003704159.1| ; Align 17819 148 69 ; Align 17888 172 42 ; Align 18040 186 150 ; Align 18226 237 156 ; Align 19357 289 276 ; Align 19856 381 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 502 Query range: 239 -> 394 Target range: 3570 -> 6459 240 : TyrAspThrLeuArgGlyTyrPheLysGlnHisGlnThrLeuIleAlaTyrCysAspLysPh : 260 |||! !! !!!!!:!..!! !.!!:!!|||||||||.!!||||||! !||||||:!!|||.! TyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnLysLe 3571 : TACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACAAACT : 3631 261 : eGluGluAlaPheSerValMetValLeuAlaGlnValLeuLeuPheSerLeuLeuIleCysL : 281 !:!!|||!.!|||.!!:!!.!.|||||||||||||||||||||||||||||||||!!:|||| uGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysL 3632 : TCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCC : 3694 282 : euAspGlyPheLeuValLeuMet >>>> Target Intron 1 >>>> AspAspAlaP : 292 ||||||||!:!|||||| ||| 457 bp !!:|||.!!| euAspGlyTyrLeuVal---Met++ ++GluAspThrP 3695 : TCGATGGATATTTGGTG---ATGgt.........................agGAAGATACTC : 4181 293 : roAsnMetArgArgValIlePheAlaPheHisLeuMetCysCysIleCysGlnLeuLeuMet : 312 ||! !|||!:!|||:!!! !||| !|||||||||! ! ! |||:!:||||||||||||||| roIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuMet 4182 : CCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGATG : 4241 313 : PheThrTyrSerCysAspCysLeuIleArgGluSerLeuAspValAlaThrAlaValTyrAs : 333 |||||||||||||||||||||||||||||||||||||||:!!||||||!.!|||:!!|||:! PheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIleTyrAs 4242 : TTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATATACGA : 4304 334 : nSerProTrpThrValValProHisAspAsnMetGlyLysMetValArgLysAspLeuValL : 354 !!!! !!|||! ! !:!!||| |||!.. |||::!|||:!!||||||||||||..!! pCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAspLeuThrP 4305 : CTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGACAT : 4367 355 : euMetIleLeuArgSerArgValProCysCysIleThrAlaSerGlyPhePheValValSer : 374 !!:!:||| !|||||||||||||||||||||:!!||||||!!!||||||||| !|||||| heValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePheProValSer 4368 : TCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCA : 4427 375 : LeuGluThrTyrThrArg >>>> Target Intron 2 >>>> ValLeuSerThrAla : 385 ||||||||||||||| ! 1970 bp |||:!!||||||||| LeuGluThrTyrThrSer++ ++ValIleSerThrAla 4428 : CTGGAAACGTACACTTCGgt.........................agGTTATAAGTACAGCA : 6430 386 : ValSerTyrPheThrLeuLeuAsnGln : 394 |||||||||||||||||||||!..||| ValSerTyrPheThrLeuLeuArgGln 6431 : GTGTCGTACTTCACACTGTTAAGGCAA : 6459 vulgar: gi|383857333|ref|XP_003704159.1| 239 394 . KQ414828.1 3570 6459 + 502 M 47 141 G 1 0 M 1 3 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 3571 6459 502 + . gene_id 2 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 3571 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3571 3714 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6459 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6459 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 3571 6459 502 + . alignment_id 2 ; Query gi|383857333|ref|XP_003704159.1| ; Align 3571 240 141 ; Align 3712 288 3 ; Align 4172 289 276 ; Align 6418 381 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 453 Query range: 66 -> 230 Target range: 2312 -> 3525 67 : AlaIleTyrThrGlyAsnAsnValMetThrIleSerMetValLeuLeuLysIlePheIleSe : 87 !.!:!!|||! ! ! !|||:!!:!:|||:!:.!!!!: !|||!!!|||||||||:!!|| ValValTyrIleMetCysAsnIleLeuThrLeuGlyIleSerLeuPheLysIlePheLeuSe 2313 : GTTGTATACATAATGTGCAACATTCTAACACTGGGCATAAGTTTGTTCAAGATCTTTCTCTC : 2373 88 : rTyrIleHisArgLysLysLeuLeuArgLeuValIleTyrAlaLysThrAsnPheTrpHisL : 108 | !!:!||||||||||||...|||::: :::|||!:!|||||||||||||||! rMetTrpSerLysLysLysLeuLeuGluLeuIleLysPheAlaArgThrAsnPheTrpHisS 2374 : GATGTGGAGTAAGAAAAAACttttggaattaattaaattcgccAGAACGAATTTCTGGCATT : 2436 109 : euAsnTyrGluProGluGluMetGluIleMetAspAsnCysArgArgThrCysThrPheLeu : 128 !:!!|||!!: !!:!!|||... |||:!!:!!.!.|||!:!|||||||||||||||||| erAspTyrAspSerGlnGluGlnIleIleValAsnGluCysLysArgThrCysThrPheLeu 2437 : CGGATTATGACTCGCAGGAGCAAATTATTGTGAACGAGTGTAAACGCACTTGTACATTCCTT : 2496 129 : IleCysAlaPheSerPheLeuThrGlnGlyThrValAlaGlyPheIleMetSerCysValVa : 149 ||||||!.!|||!:!|||!!!.!!.!.|||||||||:!!|||!:!|||!!:!!! :!!|| IleCysValPheAsnPhePheAlaAsnGlyThrValSerGlyTyrIleIleArgProIleVa 2497 : ATATGCGTGTTTAATTTCTTCGCTAATGGGACAGTGTCTGGATACATAATCAGGCCAATTGT : 2559 150 : l{G} >>>> Target Intron 1 >>>> {lu}AsnIleGlyArgAsnGluSerAspA : 159 |{!} 318 bp { !}!::||||||:::||||||||||||| l{A}++ ++{la}SerIleGlyLysAsnGluSerAspA 2560 : A{G}gt.........................ag{CA}AgtattggaaaaaatgaatccGACA : 2907 160 : rgValPheProPheAsnValTrpLeuAspValProGluIleThrLeuThrProTyrPheGlu : 179 ||:!!.!! ! !!||| !!|||:!!|||:!!||| ||||||:!!|||||||||:::||| rgLeuLeuIleValAsnPheTrpIleAspLeuPro---IleThrIleThrProTyrTyrGlu 2908 : GGTTACTTATAGTCAACTTCTGGATTGACCTGCCG---ATAACCATCACACCATactatgaa : 2964 180 : IleIleSerAlaIleGlu >>>> Target Intron 2 >>>> ValLeuAlaLeuCys : 190 |||::: ...|||:!! 406 bp :!!!!! !:!! IleLeuPheThrIleGln++ ++IlePheIleIleMet 2965 : atattatttacgaTACAGgt.........................agATTTTTATCATAATG : 3403 191 : HisValGlyValCysTyrLeuCysPheAspAsnPheLeuCysLeuMetAsnLeuHisAlaAl : 211 :!!||| !!:!! !!|||||||||.!!|||||||||||||||:!!!!:|||||||||.!!|| TyrValCysIleSerTyrLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAl 3404 : TACGTTTGCATAAGCTACCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGC : 3466 212 : aCysGlnPheArgIleLeuGlnHisArgLeuSerLysValTyrValIleHisGluLys : 230 | !||||||||||||||||||:!!|||||||||!!.|||! !! ! !:!!|||::: aThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArg 3467 : TACTCAATTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGT : 3525 vulgar: gi|383857333|ref|XP_003704159.1| 66 230 . KQ414828.1 2312 3525 + 453 M 83 249 S 0 1 5 0 2 I 0 314 3 0 2 S 1 2 M 20 60 G 1 0 M 14 42 5 0 2 I 0 402 3 0 2 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2313 3525 453 + . gene_id 3 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2313 2562 . + . KQ414828.1 exonerate:protein2genome:local exon 2313 2562 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2563 2564 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 2563 2880 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 2879 2880 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 2881 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2881 2984 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 2 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3525 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3525 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2313 3525 453 + . alignment_id 3 ; Query gi|383857333|ref|XP_003704159.1| ; Align 2313 67 249 ; Align 2883 151 60 ; Align 2943 172 42 ; Align 3391 186 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 378 Query range: 237 -> 394 Target range: 32984 -> 34301 238 : LysTyrTyrAspThrLeuArgGlyTyrPheLysGlnHisGlnThrLeuIleAlaTyrCys : 257 |||! !||| !! !!!!!:!..!! !.!!:!!|||||||||.!!|||||| :::||| LysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCys 32985 : AAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTaattgaattttgt : 33042 258 : AspLysPheGluGluAlaPheSerValMetValLeuAlaGlnValLeuLeuPheSerLeu : 277 ::: ..!||||||!.!|||!!!|||!!:||||||!.!|||||||||:!!||||||:!! GluIleLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMetPheSerIle 33043 : gaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTAATGTTTAGCATA : 33102 278 : LeuIleCysLeuAspGlyPheLeuValLeuMet >>>> Target Intron 1 >>>> : 289 :!!||||||!!!! !|||!:! !||||||:!! 406 bp IleIleCysPheAlaGlyTyrGluValLeuLeu++ 33103 : ATAATTTGCTTCGCCGGGTATGAAGTACTCCTGgt......................... : 33140 290 : AspAspAlaProAsnMetArgArgValIlePheAlaPheHisLeuMetCysCysIleC : 308 !||| ! !|||||| !|||.!!! ! !|||!!: !!:!: ++IleThrLeuProPheGluSerArgValAlaPheThrCysPheLeuIleThrGlyValS 33141 : agATAACGTTACCATTTGAATCGCGCGTTGCTTTCACGTGCTTCTTGATTACGGGCGTGA : 33601 309 : ysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAspValA : 328 !!||||||! !||||||||||||||||||:!!|||:!!! !! !|||||||||:!!:!!| erGlnLeuTrpMetPheThrTyrSerCysAsnCysIleThrThrGluSerLeuAsnIleA 33602 : GTCAACTATGGATGTTCACGTACAGTTGCAATTGCATAACAACAGAAAGCCTGAACATCG : 33661 329 : laThrAlaValTyrAsnSerProTrpThrValValProHisAspAsnMetGlyLysMetV : 348 || !:!!|||||| !.!!||||||! ! !:!!||| |||......||||||:::: laGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuL 33662 : CTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaactgC : 33721 349 : alArgLysAspLeuValLeuMetIleLeuArgSerArgValProCysCysIleThrAlaS : 368 !!|||||||||||| !:!!:!:|||||||||:!!||| !|||! !..!:!:||||||! euArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerAlaLeuThrAlaC 33722 : TAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCT : 33781 369 : erGlyPhePheValValSerLeuGluThrTyrThrArg >>>> Target Intron 2 : 381 !!||||||||| !:!!!!!|||||||||!:!|||!:! 440 bp ysGlyPhePheSerIleThrLeuGluThrPheThrLys++ 33782 : GTGGATTCTTTTCTATAACTCTCGAAACCTTTACTAAGgt.................... : 33822 382 : >>>> ValLeuSerThrAlaValSerTyrPheThrLeuLeuAsnGln : 394 :!!:!!||||||:!!:!!||||||||||||||||||!!.||| ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGln 33823 : .....agATCATGAGTACATCAATGTCGTATTTCACCCTACTAAAACAA : 34301 vulgar: gi|383857333|ref|XP_003704159.1| 237 394 . KQ414828.1 32984 34301 + 378 M 51 153 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32985 34301 378 + . gene_id 4 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32985 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32985 33137 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 2 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34301 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34301 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32985 34301 378 + . alignment_id 4 ; Query gi|383857333|ref|XP_003704159.1| ; Align 32985 238 153 ; Align 33544 289 276 ; Align 34260 381 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 351 Query range: 63 -> 229 Target range: 21885 -> 22857 64 : PheGlyGluAlaIleTyrThrGlyAsnAsnValMetThrIleSerMetValLeuLeuLys : 83 ||| ..!!!:|||! !!.! !||| !:!:.!!:!: !:!!! !:!!:!!||| PheGlnValCysMetTyrMetAlaCysAsnSerLeuAlaLeuValLeuAspIleIleLys 21886 : tttcaggTTTGCATGTACATGGCATGCAACAGTTTAGCCCTGGTTTTGGATATAATCAAG : 21943 84 : IlePheIleSerTyrIleHisArgLysLysLeuLeuArgLeuValIleTyrAlaLysThr : 103 ||||||:!! ! !:!!!..!:!||||||!!!||| !!|||:!! ||| !:!!! ! IlePheValLeuLeuValArgLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLys 21944 : ATTTTCGTCCTACTCGTACGGAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAG : 22003 104 : AsnPheTrpHisLeuAsnTyrGluProGluGluMetGluIleMetAspAsnCysArgArg : 123 |||||||||||||||||||||!!:! !!!:|||! ...|||!!:! :!!...!:!||| AsnPheTrpHisLeuAsnTyrAspGlnAspGluAsnSerIleIleAlaHisAlaLysArg 22004 : AATTTTTGGCATTTGAACTACGACCAGGACGAGAATTCTATTATCGCACACGCGAAACGA : 22063 124 : ThrCysThrPheLeuIleCysAlaPheSerPheLeuThrGlnGlyThrValAlaGlyPhe : 143 ||||||! !!:!!!!:!!|||!.!|||||||||! !:!!|||..!|||||| !..!!:! ThrCysIleTyrPheValCysValPheSerPheCysSerGlnSerThrValPheSerTyr 22064 : ACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTAT : 22123 144 : IleMetSerCysValVal{G} >>>> Target Intron 1 >>>> {lu}AsnIle : 152 |||!!:!!! !!|||{.} 170 bp {.!}|||:!! IleIleArgProPheVal{S}++ ++{er}AsnLeu 22124 : ATAATAAGGCCATTTGTA{T}gt.........................ag{ca}AATCTT : 22320 153 : GlyArgAsnGluSerAspArgValPheProPheAsnValTrpLeuAspValProGluIle : 172 |||!:!|||||||||||||||! ! ! !!:!:!!:!!|||||||||:!!||| :!! GlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuPro---Leu 22321 : GGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCA---TTA : 22377 173 : ThrLeuThrProTyrPheGluIleIleSerAlaIleGlu >>>> Target Intron : 186 :!!:!!|||||||||:::|||||| ! !|||:!! 307 bp SerValThrProTyrTyrGluIleThrTyrIleIleGln++ 22378 : TCCGTAACAccatattatgaaattacttACATAATACAGgt................... : 22421 187 : 2 >>>> ValLeuAlaLeuCysHisValGlyValCysTyrLeuCysPheAspAsnPheL : 203 !.!|||:!!:!!! !!!.|||.!!!.!|||||||||||||||||| .... ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIleP 22422 : ......agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcattt : 22777 204 : euCysLeuMetAsnLeuHisAlaAlaCysGlnPheArgIleLeuGlnHisArgLeuSerL : 223 .. :::::: ||||||!.!||| !!||||||||||||||||||:!!|||:!!:!!! hePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaA 22778 : ttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCA : 22837 224 : ysValTyrValIleHisGlu : 229 !.|||! ! !:!! !||| snValSerGlyLeuSerGlu 22838 : ATGTGTCAGGTCTAAGCGAG : 22857 vulgar: gi|383857333|ref|XP_003704159.1| 63 229 . KQ414828.1 21885 22857 + 351 M 86 258 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 20 60 G 1 0 M 14 42 5 0 2 I 0 303 3 0 2 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21886 22857 351 + . gene_id 5 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 21886 22144 . + . KQ414828.1 exonerate:protein2genome:local exon 21886 22144 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22145 22146 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22145 22314 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22313 22314 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 22315 22418 . + . KQ414828.1 exonerate:protein2genome:local exon 22315 22418 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 22419 22420 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22419 22725 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 22857 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 22857 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21886 22857 351 + . alignment_id 5 ; Query gi|383857333|ref|XP_003704159.1| ; Align 21886 64 258 ; Align 22317 151 60 ; Align 22377 172 42 ; Align 22726 186 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 322 Query range: 237 -> 381 Target range: 22905 -> 23829 238 : LysTyrTyrAspThrLeuArgGlyTyrPheLysGlnHisGlnThrLeuIleAlaTyrCys : 257 |||! !||| !! !!!!!:!..!! !.!!:!!|||||||||.!!||||||! !!:!||| LysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCys 22906 : AAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAATTTTGT : 22963 258 : AspLysPheGluGluAlaPheSerValMetValLeuAlaGlnValLeuLeuPheSerLeu : 277 ! ! !.!!||||||!.!|||!!!|||!!:||||||!.!|||||||||:!!! !|||:!! AlaThrLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMetSerSerIle 22964 : GCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCTAATGTCTAGCATA : 23023 278 : LeuIleCysLeuAspGlyPheLeuValLeuMetAspAspAlaProAsnMet{A} >>>> : 295 |||||||||!!! !|||!:!! !||||||:!!! ..! ! !!:! {!} LeuIleCysPheIleGlyTyrGlnValLeuLeuValSerIleGluSerTyr{T}-+ 23024 : TTAATTTGCTTCATCGGGTATCAAGTACTCCTGGTGAGTATCGAAAGCTAT{A}at.... : 23080 296 : Target Intron 1 >>>> {rg}ArgValIlePheAlaPheHisLeuMetCysCys : 306 492 bp { !}|||||| !||||||! ! !|||||| !! +-{hr}ArgValAlaPheAlaCysPheLeuMetMetGly 23081 : .....................at{CG}CGCGTTGCTTTCGCGTGCTTCTTGATGATGGGC : 23602 307 : IleCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsp : 326 !!: !!||||||! !||||||||||||||||||||||||:!!! !! !|||||||||:!! MetSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsn 23603 : ATGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCATAACAACAGAAAGCCTGAAC : 23662 327 : ValAlaThrAlaValTyrAsnSerProTrpThrValValProHisAspAsnMetGlyLys : 346 :!!||| !:!!|||||| !.!!||||||! ! !:!!||| |||!!..!.|||||| IleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLys 23663 : ATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATGGACAAATTTGGAAAA : 23722 347 : MetValArgLysAspLeuValLeuMetIleLeuArgSerArgValProCysCysIleThr : 366 :!!:!!||||||!!:||| !:!!:!:|||||||||:!!||| !|||! !..!:!:||| LeuLeuArgLysGluLeuGlnMetLeuIleLeuArgAlaArgArgProSerAlaLeuThr 23723 : CTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACT : 23782 367 : AlaSerGlyPhePheValValSerLeuGluThrTyrThrArgVal : 381 |||!!!||||||||| !:!!||||||||||||!:!|||!:!||| AlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 23783 : GCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 23829 vulgar: gi|383857333|ref|XP_003704159.1| 237 381 . KQ414828.1 22905 23829 + 322 M 57 171 S 0 1 5 0 2 I 0 488 3 0 2 S 1 2 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22906 23829 322 + . gene_id 6 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22906 23077 . + . KQ414828.1 exonerate:protein2genome:local exon 22906 23077 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23078 23079 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 23078 23569 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 23568 23569 . + . intron_id 0 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local cds 23570 23829 . + . KQ414828.1 exonerate:protein2genome:local exon 23570 23829 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22906 23829 322 + . alignment_id 6 ; Query gi|383857333|ref|XP_003704159.1| ; Align 22906 238 171 ; Align 23572 296 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 277 Query range: 295 -> 394 Target range: 28526 -> 29233 296 : ArgValIlePheAlaPheHisLeuMetCysCysIleCysGlnLeuLeuMetPheThrTyr : 315 |||||| !!!.|||! ! !! !||| !!:!: !!||||||! !|||||||||||| ArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuTrpMetPheThrTyr 28527 : CGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTATGGATGTTCACGTAC : 28584 316 : SerCysAspCysLeuIleArgGluSerLeuAspValAlaThrAlaValTyrAsnSerPro : 335 ||||||||||||:!!! !! !|||||||||:!!:!!||| !:!!|||||| !.!!||| SerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyPro 28585 : AGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCA : 28644 336 : TrpThrValValProHisAspAsnMetGlyLysMetValArgLysAspLeuValLeuMet : 355 |||! ! !:!!||| |||......||||||::::!!|||||||||||| !:!!:!: TrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeu 28645 : TGGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTC : 28704 356 : IleLeuArgSerArgValProCysCysIleThrAlaSerGlyPhePheValValSerLeu : 375 |||||||||:!!||| !|||! !! !:!:||||||!!!||||||||| !:!!|||||| IleLeuArgAlaArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeu 28705 : ATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTC : 28764 376 : GluThrTyrThrArg >>>> Target Intron 1 >>>> ValLeuSerThrAlaV : 386 ||||||!:!|||!:! 410 bp :!!:!!||||||:!!: GluThrPheThrLys++ ++IleMetSerThrSerM 28765 : GAAACCTTTACTAAGgt.........................agATCATGAGTACATCAA : 29207 387 : alSerTyrPheThrLeuLeuAsnGln : 394 !!||||||||||||||||||!!.||| etSerTyrPheThrLeuLeuLysGln 29208 : TGTCGTATTTCACATTATTAAAACAA : 29233 vulgar: gi|383857333|ref|XP_003704159.1| 295 394 . KQ414828.1 28526 29233 + 277 M 85 255 5 0 2 I 0 406 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28527 29233 277 + . gene_id 7 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 28527 28781 . + . KQ414828.1 exonerate:protein2genome:local exon 28527 28781 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 28782 28783 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 28782 29191 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 29190 29191 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 29192 29233 . + . KQ414828.1 exonerate:protein2genome:local exon 29192 29233 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28527 29233 277 + . alignment_id 7 ; Query gi|383857333|ref|XP_003704159.1| ; Align 28527 296 255 ; Align 29192 381 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 269 Query range: 294 -> 392 Target range: 12487 -> 13140 295 : ArgArgValIlePheAlaPheHisLeuMetCysCysIleCysGlnLeuLeuMetPheThr : 314 |||||| !|||||| !|||! !:!! !!..!!!: ! !|||!!!||||||||| ArgArgSerIlePheMetPheLeuIleCysGlyAlaMetValLeuLeuPheMetPheThr 12488 : AGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTTTTATTGTTTATGTTCACC : 12545 315 : TyrSerCysAspCysLeuIleArgGluSerLeuAspValAlaThrAlaValTyrAsnSer : 334 |||||||||:!! :!!|||..!:!!||| !:!!:!!||| !|||!.!|||::::!! TyrSerCysAsnMetValIleGluGlnSerAspAsnIleAlaPheAlaAlaTyrSerAla 12546 : TACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCTTTTGCGGCGTATTCGGCA : 12605 335 : ProTrpThrValValProHisAspAsnMetGlyLysMetValArgLysAspLeuValLeu : 354 ! !||||||! !:!!||| :!!!!.! ||||||! !:!!||| ! ||||||:!!:!! LeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeuArgHisAspLeuIleMet 12606 : CTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTACGGCATGATTTGATAATG : 12665 355 : MetIleLeuArgSerArgValProCysCysIleThrAlaSerGlyPhePheValValSer : 374 :!:||| !||||||||| ! !||||||:!:||||||!:!||||||||| !|||||| ValIleGlyArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePheProValSer 12666 : GTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATGGATTTTTCCCTGTGTCC : 12725 375 : LeuGluThrTyrThrArg >>>> Target Intron 1 >>>> ValLeuSerThrA : 385 |||||||||||||||! ! 359 bp :::|||||||||| LeuGluThrTyrThrThr++ ++IleLeuSerThrA 12726 : TTAGAAACTTATACTACGgt.........................agattttgAGTACCG : 13117 386 : laValSerTyrPheThrLeuLeu : 392 ||!.!|||||||||||||||||| laAlaSerTyrPheThrLeuLeu 13118 : CGGCGTCGTACTTCACATTATTG : 13140 vulgar: gi|383857333|ref|XP_003704159.1| 294 392 . KQ414828.1 12487 13140 + 269 M 86 258 5 0 2 I 0 355 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 12488 13140 269 + . gene_id 8 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 12488 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12488 12745 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13104 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 13103 13104 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 13105 13140 . + . KQ414828.1 exonerate:protein2genome:local exon 13105 13140 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 12488 13140 269 + . alignment_id 8 ; Query gi|383857333|ref|XP_003704159.1| ; Align 12488 295 258 ; Align 13105 381 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 237 Query range: 300 -> 381 Target range: 38517 -> 38760 301 : PheHisLeuMetCysCysIleCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeu : 320 ||| !||| !!:!: !!||||||! !||||||||||||||||||||||||:!! PheAlaThrMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIle 38518 : TTCGCAACGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATA : 38575 321 : IleArgGluSerLeuAspValAlaThrAlaValTyrAsnSerProTrpThrValValPro : 340 ! !! !|||||||||:!!:!!||| !:!!|||||| !.!!||||||! ! !:!!||| ThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuPro 38576 : ACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCA : 38635 341 : HisAspAsnMetGlyLysMetValArgLysAspLeuValLeuMetIleLeuArgSerArg : 360 |||......||||||::::!!|||||||||||| !:!!:!:|||||||||:!!||| MetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArg 38636 : ATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGA : 38695 361 : ValProCysCysIleThrAlaSerGlyPhePheValValSerLeuGluThrTyrThrArg : 380 !|||! !! !:!:||||||!!!||||||||| !:!!||||||||||||!:!|||!:! ArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys 38696 : CGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAG : 38755 381 : Val : 381 ||| Val 38756 : GTA : 38760 vulgar: gi|383857333|ref|XP_003704159.1| 300 381 . KQ414828.1 38517 38760 + 237 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38518 38760 237 + . gene_id 9 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38518 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38518 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38518 38760 237 + . alignment_id 9 ; Query gi|383857333|ref|XP_003704159.1| ; Align 38518 301 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 147 -> 229 Target range: 37450 -> 38000 148 : ValValGluAsnIleGlyArgAsnGluSerAspArgValPheProPheAsnValTrpLeu : 167 ::: |||:!!|||!:!|||||||||||||||! ! ! !!:!:!!:!!|||||| IleSerAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 37451 : atttcagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 37508 168 : AspValProGluIleThrLeuThrProTyrPheGluIleIleSerAlaIleGlu >>>> : 186 |||:!!||| :!!:!!:!!|||||||||:::|||||| ! !|||:!! AspLeuPro---LeuSerIleThrProTyrTyrGluIleThrTyrIleIleGln++ 37509 : GATCTACCA---TTATCCATAACAccatattatgaaattacttACATAATACAGgt.... : 37564 187 : Target Intron 1 >>>> ValLeuAlaLeuCysHisValGlyValCysTyrLeuC : 198 307 bp !.!|||:!!:!!! !!!.|||.!!!.!|||||||||| ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuC 37565 : .....................agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTT : 37905 199 : ysPheAspAsnPheLeuCysLeuMetAsnLeuHisAlaAlaCysGlnPheArgIleLeuG : 218 |||||||| ...... :::::: ||||||!.!||| !!|||||||||||||||| ysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuG 37906 : GCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTAC : 37965 219 : lnHisArgLeuSerLysValTyrValIleHisGlu : 229 ||:!!|||:!!:!!!!.|||! ! !:!! !||| lnTyrArgIleAlaAsnValSerGlyLeuSerGlu 37966 : AATACAGAATTGCCAATGTGTCAGGTCTAAGCGAG : 38000 vulgar: gi|383857333|ref|XP_003704159.1| 147 229 . KQ414828.1 37450 38000 + 183 M 23 69 G 1 0 M 14 42 5 0 2 I 0 303 3 0 2 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37451 38000 183 + . gene_id 10 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37451 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37451 37561 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 38000 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 38000 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37451 38000 183 + . alignment_id 10 ; Query gi|383857333|ref|XP_003704159.1| ; Align 37451 148 69 ; Align 37520 172 42 ; Align 37869 186 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 66 -> 149 Target range: 26927 -> 27176 67 : AlaIleTyrThrGlyAsnAsnValMetThrIleSerMetValLeuLeuLysIlePheIle : 86 ..!!!:|||! !!.!..!|||! !:!:.!!!!: !:!!! !:!!:!!|||||||||! ! CysMetTyrMetAlaGlyAsnGlyLeuAlaMetValLeuAspIleIleLysIlePheThr 26928 : TGCATGTACATGGCTGGCAACGGTTTAGCCATGGTTTTGGATATAATCAAGATTTTCACC : 26985 87 : SerTyrIleHisArgLysLysLeuLeuArgLeuValIleTyrAlaLysThrAsnPheTrp : 106 ! !:!!|||!:!||||||!!!||| !!|||:!! ||| !:!!! !||||||||| LeuValValHisLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheTrp 26986 : CTAGTCGTACACAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTTTGG : 27045 107 : HisLeuAsnTyrGluProGluGluMetGluIleMetAspAsnCysArgArgThrCysThr : 126 ||||||||||||!!:! ! ! |||! ...:!!:!!! .!....!:!|||! !|||! ! HisLeuAsnTyrAspGlnTyrGluAsnSerValLeuAlaGlnAlaLysArgMetCysIle 27046 : CATTTGAACTACGATCAGTACGAGAATTCTGTTTTGGCACAGGCGAAACGAATGTGCATT : 27105 127 : PheLeuIleCysAlaPheSerPheLeuThrGlnGlyThrValAlaGlyPheIleMetSer : 146 !:!!!!:!:|||......||||||...:::|||...:!!||| !..!!:!|||!!:!!! TyrPheValCysValLeuSerPhePheSerGlnSerSerValLeuSerTyrIleIleArg 27106 : TACTTCGTGTGcgttttgtcatttttttctcaatctTCAGTTCTTTCCTATATCATAAGG : 27165 147 : CysValVal : 149 :!!||| ProLeuVal 27166 : CCACTTGTA : 27176 vulgar: gi|383857333|ref|XP_003704159.1| 66 149 . KQ414828.1 26927 27176 + 171 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26928 27176 171 + . gene_id 11 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 26928 27176 . + . KQ414828.1 exonerate:protein2genome:local exon 26928 27176 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 26928 27176 171 + . alignment_id 11 ; Query gi|383857333|ref|XP_003704159.1| ; Align 26928 67 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 147 -> 234 Target range: 32386 -> 32951 148 : ValValGluAsnIleGlyArgAsnGluSerAspArgValPheProPheAsnValTrpLeu : 167 :::::: |||:!!|||!:!|||||||||||||||! ! ! !!:!:!!:!!|||||| IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 32387 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 32444 168 : AspValPro >>>> Target Intron 1 >>>> GluIleThrLeuThrProTyrP : 178 |||:!!||| 304 bp ::: !:!!! !||| AspLeuPro-+ ++LysSerGlnMetIleProGlyA 32445 : GATCTACCAtt.........................agaaatcaCAAATGATTCCAGgta : 32781 179 : heGluIleIleSerAlaIleGluValLeuAlaLeuCysHisValGlyValCysTyrLeuC : 198 ::: |||||| !! :!!!.!|||:!!:!!! !!!.||||||||||||||||||| snLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValGlyValCysTyrLeuC 32782 : ataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTT : 32841 199 : ysPheAspAsnPheLeuCysLeuMetAsnLeuHisAlaAlaCysGlnPheArgIleLeuG : 218 |||||||||||...... :::||| !||||||!.!||| !!|||||||||||||||| ysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuG 32842 : GCTttgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTAC : 32901 219 : lnHisArgLeuSerLysValTyrValIleHisGluLysGluLysAspHis : 234 ||:!!|||:!!:!!!!.|||! ! !:!! !|||! !! !|||..!:!! lnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerAsn 32902 : AATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAGAGCAAT : 32951 vulgar: gi|383857333|ref|XP_003704159.1| 147 234 . KQ414828.1 32386 32951 + 164 M 23 69 5 0 2 I 0 300 3 0 2 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32387 32951 164 + . gene_id 12 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32387 32455 . + . KQ414828.1 exonerate:protein2genome:local exon 32387 32455 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32456 32457 . + . intron_id 1 ; splice_site "TT" KQ414828.1 exonerate:protein2genome:local intron 32456 32759 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32758 32759 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 32760 32951 . + . KQ414828.1 exonerate:protein2genome:local exon 32760 32951 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32387 32951 164 + . alignment_id 12 ; Query gi|383857333|ref|XP_003704159.1| ; Align 32387 148 69 ; Align 32760 171 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 0 -> 65 Target range: 15100 -> 15295 1 : MetAspGlnArgSerGluGluAspPheSerIleThrThrThrPhePheTyrLeuLysPhe : 20 |||..!... !!!! !!:|||.!.||||||!:! !|||! ! !!!:!:!!|||.!! MetSerSerPheThrThrAspAspIleSerIleSerLeuThrSerValPheMetLysIle 15101 : ATGAGTAGTTTCACCACCGATGACATATCAATCAGCCTGACGTCCGTTTTCATGAAGATC : 15158 21 : ValGlyPheTrpLeuValThrAsnLysPheGluGluArgMetLysThrLeuSerIleIle : 40 ||||||.!.|||:!!!.!:!!|||:::||||||:!!|||:!:::!!.!:!!!!!:!: ! ValGlyLeuTrpMetAlaSerAsnArgPheGluGlnArgValArgAsnIleThrLeuCys 15159 : GTTGGACTGTGGATGGCGTCGAACCGTTTCGAGCAACGAGTACGAAATATCACGCTGTGT : 15218 41 : TyrThrValThrMetLeuSerIleAlaValGlyIleGluGlyThrAspLeuTyrTyrSer : 60 ||||||:!!! ! !:!! !.!!|||:!! !!|||:!! !|||||||||||||||||| TyrThrLeuIleAlaIleLeuPheAlaLeuTrpIleGlnMetThrAspLeuTyrTyrSer 15219 : TACACGCTGATCGCGATTCTCTTCGCCCTGTGGATACAAATGACGGATTTGTATTACTCG : 15278 61 : LeuAspAsnPheGly : 65 ! !! :!!|||||| TrpGlyAspPheGly 15279 : TGGGGAGATTTTGGT : 15295 vulgar: gi|383857333|ref|XP_003704159.1| 0 65 . KQ414828.1 15100 15295 + 147 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15101 15295 147 + . gene_id 13 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 15101 15295 . + . KQ414828.1 exonerate:protein2genome:local exon 15101 15295 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15101 15295 147 + . alignment_id 13 ; Query gi|383857333|ref|XP_003704159.1| ; Align 15101 1 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 228 -> 288 Target range: 10984 -> 11164 229 : GluLysGluLysAspHisLeuThrValLysTyrTyrAspThrLeuArgGlyTyrPheLys : 248 |||...! ! !!!: !!! !||| !!:!! !|||!!:! !!!!!:!.!!||| !!::! GluSerValLeuGluAspCysThrArgArgSerTyrGluLysPheLysSerTyrValArg 10985 : gaatcTGTATTGGAAGACTGTACACGTAGATCTTACGAGAAATTTAAGAGTTACGTTCGA : 11042 249 : GlnHisGlnThrLeuIleAlaTyrCysAspLysPheGluGluAlaPheSerValMetVal : 268 ||||||||||||||||||! !|||! !!!:|||.!!|||.!.!.!!:!!!! !!!::!! GlnHisGlnThrLeuIleAspTyrTyrGluLysLeuGluHisValTyrThrLysIleIle 11043 : CAGCATCAAACGTTGATCGATTATTACGAGAAGCTTGAACACGTTTACACGAAAATTATA : 11102 269 : LeuAlaGlnValLeuLeuPheSerLeuLeuIleCysLeuAspGlyPheLeuValLeuMet : 288 |||!.!||||||||||||||||||:!!|||||||||||| !|||!:!! !:!!|||:!! LeuGlyGlnValLeuLeuPheSerValLeuIleCysLeuPheGlyTyrGlnIleLeuLeu 11103 : CTTGGGCAAGTGTTACTGTTCAGTGTGTTAATTTGCCTCTTTGGTTATCAGATATTATTG : 11162 vulgar: gi|383857333|ref|XP_003704159.1| 228 288 . KQ414828.1 10984 11164 + 139 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10985 11164 139 + . gene_id 14 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 10985 11164 . + . KQ414828.1 exonerate:protein2genome:local exon 10985 11164 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10985 11164 139 + . alignment_id 14 ; Query gi|383857333|ref|XP_003704159.1| ; Align 10985 229 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 57 -> 125 Target range: 8857 -> 9061 58 : TyrTyrSerLeuAspAsnPheGlyGluAlaIleTyrThrGlyAsnAsnValMetThrIleSe : 78 |||!:!!!!:!!! ! !||| !!!: !:!!|||..!.!!!.!|||:!!:!!!:!:!:! TyrPheThrValValCysPhe***AspIleLeuTyrValSerThrAsnLeuLeuSerValIl 8858 : TACTTTACAGTGGTTTGTTTCTAGGATATTCTTTACGTTAGTACCAACTTACTGAGCGTGAT : 8918 79 : rMetValLeuLeuLysIlePheIleSerTyrIleHisArgLysLysLeuLeuArgLeuValI : 99 !:!:..! !:!!|||:!! !:!! ! ||||||!:! !:!!!!!:!!!!!|||:!! eLeuThrThrIleLysLeuThrValValLeuIleHisLysValGluPheMetSerLeuIleA 8919 : CTTAACTACGATCAAGCTAACTGTCGTACTAATACACAAAGTGGAATTCATGAGTCTGATTG : 8981 100 : leTyrAlaLysThrAsnPheTrpHisLeuAsnTyrGluProGluGluMetGluIleMetAsp : 119 !||| ! ! !:!!||||||:!!:!!:!!|||!!:! !.!.|||! ..!||||||||| spTyrMetTyrGluHisPheTrpAsnValAspTyrAspLeuHisGluLysArgIleMetAsp 8982 : ATTACATGTACGAACATTTCTGGAACGTGGATTACGATCTTCACGAGAAAAGAATTATggat : 9041 120 : AsnCysArgArgThrCys : 125 ||||||::::::|||||| AsnCysLysLysThrCys 9042 : aattgtaaaaaaactTGC : 9061 vulgar: gi|383857333|ref|XP_003704159.1| 57 125 . KQ414828.1 8857 9061 + 137 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 8858 9061 137 + . gene_id 15 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 8858 9061 . + . KQ414828.1 exonerate:protein2genome:local exon 8858 9061 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 8858 9061 137 + . alignment_id 15 ; Query gi|383857333|ref|XP_003704159.1| ; Align 8858 58 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 185 -> 224 Target range: 10831 -> 10948 186 : ValLeuAlaLeuCysHisValGlyValCysTyrLeuCysPheAspAsnPheLeuCysLeu : 205 :!!! !!.!|||! ! !..!|||:!!||||||!!!||||||||||||.!!!!!|||:!! IleSerGlyLeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIle 10832 : ATTTCAGGACTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATC : 10889 206 : MetAsnLeuHisAlaAlaCysGlnPheArgIleLeuGlnHisArgLeuSerLysVal : 224 |||!:!:!!||| !::! !!||||||||||||||||||:!!||||||!!!|||:!! MetSerValHisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeu 10890 : ATGAGCGTGCATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTG : 10948 vulgar: gi|383857333|ref|XP_003704159.1| 185 224 . KQ414828.1 10831 10948 + 124 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10832 10948 124 + . gene_id 16 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 10832 10948 . + . KQ414828.1 exonerate:protein2genome:local exon 10832 10948 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10832 10948 124 + . alignment_id 16 ; Query gi|383857333|ref|XP_003704159.1| ; Align 10832 186 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 237 -> 288 Target range: 38048 -> 38201 238 : LysTyrTyrAspThrLeuArgGlyTyrPheLysGlnHisGlnThrLeuIleAlaTyrCys : 257 |||! !||| !! !!!!!:!..!! !.!!:!!|||||||||.!!||||||! !!:!||| LysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCys 38049 : AAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAATTTTGT : 38106 258 : AspLysPheGluGluAlaPheSerValMetValLeuAlaGlnValLeuLeuPheSerLeu : 277 ! ! !.!!||||||!.!|||!!!|||!!:!.!|||!.!|||||||||:!!||||||:!! AlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnValLeuMetPheSerIle 38107 : GCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCTAATGTTTAGCATA : 38166 278 : LeuIleCysLeuAspGlyPheLeuValLeuMet : 288 |||||||||!!!! !! !!:!! !!.!|||:!! LeuIleCysPheValValTyrGlnAlaLeuLeu 38167 : CTAATTTGCTTCGTCGTGTATCAAGCACTCCTG : 38201 vulgar: gi|383857333|ref|XP_003704159.1| 237 288 . KQ414828.1 38048 38201 + 112 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38049 38201 112 + . gene_id 17 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38049 38201 . + . KQ414828.1 exonerate:protein2genome:local exon 38049 38201 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38049 38201 112 + . alignment_id 17 ; Query gi|383857333|ref|XP_003704159.1| ; Align 38049 238 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 147 -> 189 Target range: 27339 -> 27462 148 : ValValGluAsnIleGlyArgAsnGluSerAspArgValPheProPheAsnValTrpLeu : 167 :::::: |||:!!|||!:!|||||||||||||||! ! ! !|||:!!:!!|||!!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPhe 27340 : attttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTC : 27397 168 : AspValProGluIleThrLeuThrProTyrPheGluIleIleSerAlaIleGluValLeu : 187 |||:!!||| :!!:!!:!!|||||||||:::|||||| ! !|||:!!|||||| AspLeuPro---LeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeu 27398 : GATCTACCA---TTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTA : 27454 188 : AlaLeu : 189 !!:!! ProIle 27455 : CCAATT : 27462 vulgar: gi|383857333|ref|XP_003704159.1| 147 189 . KQ414828.1 27339 27462 + 100 M 23 69 G 1 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27340 27462 100 + . gene_id 18 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27340 27462 . + . KQ414828.1 exonerate:protein2genome:local exon 27340 27462 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 27340 27462 100 + . alignment_id 18 ; Query gi|383857333|ref|XP_003704159.1| ; Align 27340 148 69 ; Align 27409 172 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857335|ref|XP_003704160.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 579 Query range: 128 -> 408 Target range: 17761 -> 19921 129 : IleValPheIleThrPheCysValGlnGlyThrCysSerGlyTyrAlaValThrProLeu : 148 |||...||||||... |||:::...... ... !||| !.!! !:!! IleThrPheIleAlaGlnLysValGluAsnAsnLysGlu***ValAlaArgAlaPheIle 17762 : attacttttattgcacaaaaagtagaaaataataaagaataagTTGCTCGCGCTTTCATT : 17819 149 : LeuGluAsnIleGlyLysProGluMetGluArgMetLeuProPheAsnLeuTrpIleAsp : 168 ||| |||||||||||| ||| ||||||!!:||||||||||||:!!|||:!!:!! LeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpValAsn 17820 : TTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTCAAC : 17879 169 : PheProThrGlyLysSerProTyrPheGluValLeuPheAlaIleGln >>>> Targe : 185 !!.||| !..!! !!!!||||||!:!|||::: |||::::::||| LeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln++ 17880 : TTGCCATTATCAATGACGCCATATTACgaaataactttttcattaCAGgt.......... : 17932 186 : t Intron 1 >>>> MetLeuCysValTyrHisValAlaIleSerTyrPheCysPheA : 199 110 bp :::|||! !:!!||||||:!!!.!:!:|||||||||||||||| ++ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysPheA 17933 : ...............aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgcttcg : 18082 200 : spAsnPheLeuCysLeuValCysLeuAsnIleThrGlyGlnPheArgIleLeuGlnHisA : 219 ||||||||||||||::!:!! !|||:!! .!! !|||||||||:!!||||||:!!| spAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnTyrA 18083 : acaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAATACC : 18142 220 : rgLeuAlaSerLeuAsnGlyMetLysLysThrAspAspGluAspSerAspAlaTyrValS : 239 ||:!!|||!:!:!!!.!! !:!:||| ::: :::::: ::: ! ..!| rgMetAlaAsnMetThrAspLeuLysAspLysGluArgLysGluArgAsnMetLysThrS 18143 : GAATGGCGAATATGACCGATTTAAAGGacaaagagaggaaagagagaaatatgaAGACAA : 18202 240 : erAspAspAlaIleLysTyrArgThrLys<-><-><-><->LeuLysSerCysIleArgH : 255 ||! ..!:!! !:! !|||:!! ||||||..!! !||||||! erValSerSerAlaCysPheAlaThrGluCysTyrAsnValLeuLysAspTyrIleArgG 18203 : GTGTGAGTTCGGCGTGCTTTGCAACAGAATGTTACAACGTTCTCAAAGATTATATCAGAC : 18262 256 : isHisGlnThrLeuIleAsnTyrCysArgLysLeuGluAsnValPheThrLeuIleValL : 275 !.||||||!.!|||||| !||||||!.!|||||||||!!.||||||!.!:!!||||||| lnHisGlnAsnLeuIleAlaTyrCysAsnLysLeuGluLysValPheAsnIleIleValL 18263 : AGCATCAGAACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGTTCAATATCATTGTTC : 18322 276 : euGlyGluValLeuPheLeuAlaMetLeuLeuCysCysLeuGlyPheGlnIlePheLeu : 295 |||||:!!:!!|||.!.!!!::!||||||:!!||| ! !||||||||||||.!!:!! euGlyGlnLeuLeuMetPheSerMetLeuIleCysLeuAspGlyPheGlnIleLeuMet+ 18323 : TGGGGCAATTGTTAATGTTCAGCATGTTGATCTGTCTCGATGGATTTCAGATACTTATGg : 18382 296 : >>>> Target Intron 2 >>>> MetSerSerProProAlaArgArgIleSerLe : 305 975 bp !:!!!!||| !! !! !|||:!:! !!! + ++AlaAsnThrProThrArgThrArgLeuIlePh 18383 : t.........................agGCAAATACACCTACCAGAACCCGACTGATTTT : 19387 306 : uValIleGlyMetMetGlyIleCysSerGlnLeuPheMetPheSerTyrCysTrpAspGl : 325 !:!!.!! !!!: !.! ! !!!||||||.!.||||||!!!||| !!!! ||| ! eIlePheHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCy 19388 : CATCTTTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGCTGCGACTG : 19447 326 : yLeuValArgGluSerValAsnValGlyGlnAlaAlaPheAlaGlyProTrpSerIlePh : 345 !:!!:!!|||||||||..!!:!..!!.!:!!|||!.!!:!::!|||||||||!!!:!!!! sIleIleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyProTrpThrLeuLe 19448 : CATCATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGACACTTTT : 19507 346 : eSerIleLysGluGlyGlyLysSerLeuArgSerAspValLeuIleIleIleMetArgSe : 365 . !!!!:!..! !! !||||||! !:!!|||!.!|||:!!:!!:!!:!!||||||||||| uProMetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuValIleMetArgSe 19508 : ACCAATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCATGAGATC : 19567 366 : rAsnLysAlaCysCysLeuThrAlaAlaGlyPhePheProValSerLeuGluThrCysTh : 385 |!:! ! !!||||||||||||||| !||||||||| !|||||||||||||||! !|| rSerValProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGluThrTyrTh 19568 : GAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAACGTACAC : 19627 386 : rAla >>>> Target Intron 3 >>>> ValLeuSerThrAlaMetSerTyrPhe : 395 |!.! 223 bp ||||||||||||||| ||||||||| rGly++ ++ValLeuSerThrAlaAlaSerTyrPhe 19628 : AGGGgt.........................agGTTTTAAGCACCGCAGCCTCATACTTT : 19880 396 : ThrLeuLeuArgHisSerAlaProAspLeuGlnThrAla : 408 |||||||||!:!!!.!!!:!! !:!! !.!.!:!:!! ThrLeuLeuLysGlnArgSerGluAsnAlaAspSerSer 19881 : ACGTTGCTGAAGCAAAGATCAGAGAATGCCGACAGTTCG : 19921 vulgar: gi|383857335|ref|XP_003704160.1| 128 408 . KQ414828.1 17761 19921 + 579 M 56 168 5 0 2 I 0 106 3 0 2 M 64 192 G 0 12 M 46 138 5 0 2 I 0 971 3 0 2 M 92 276 5 0 2 I 0 219 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17762 19921 579 + . gene_id 1 ; sequence gi|383857335|ref|XP_003704160.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17762 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17762 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18381 . + . insertions 12 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19921 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19921 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17762 19921 579 + . alignment_id 1 ; Query gi|383857335|ref|XP_003704160.1| ; Align 17762 129 168 ; Align 18040 185 192 ; Align 18244 249 138 ; Align 19357 295 276 ; Align 19856 387 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857335|ref|XP_003704160.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 532 Query range: 150 -> 404 Target range: 2882 -> 6471 151 : AsnIleGlyLysProGluMetGluArgMetLeuProPheAsnLeuTrpIleAspPheProTh : 171 !::||||||||| ||| !!:|||:!:||| ! !!|||!!!|||||||||.!.|||! SerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuProIl 2883 : AgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCCGAT : 2943 172 : rGlyLysSerProTyrPheGluValLeuPheAlaIleGln >>>> Target Intron 1 : 185 ! !! !!!||||||:::|||:::||||||...|||||| 406 bp eThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2944 : AACCATCACACCATactatgaaatattatttacgaTACAGgt.................... : 2987 186 : >>>> MetLeuCysValTyrHisValAlaIleSerTyrPheCysPheAspAsnPheLeuC : 203 !!:!!! !:!! :!!|||..!|||||||||.!!|||.!!||||||||||||| ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheLeuC 2988 : .....agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTCTGT : 3445 204 : ysLeuValCysLeuAsnIleThrGlyGlnPheArgIleLeuGlnHisArgLeuAlaSerLeu : 223 ||:!!:!! !|||:!!! !.!! !||||||||||||||||||:!!||||||:!!!:!:!! ysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnVal 3446 : GCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAATGTG : 3505 224 : AsnGlyMetLysLysThrAspAspGluAspSerAspAlaTyrValSerAspAspAlaIleLy : 244 !||| !!.:!! !...|||::: ||| !|||:!!...! ! ! CysGlyAlaAsnGluArgSerAspLysIleSerLysLysThrProSerAsnSerAspGluCy 3506 : TGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATG : 3568 245 : sTyrArgThrLysLeuLysSerCysIleArgHisHisGlnThrLeuIleAsnTyrCysArgL : 265 ||| .!!|||!!!|||!:!||||||!:!!!.||||||.!!||||||.!.||||||!.!| sTyr---AlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnL 3569 : CTAC---GCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACA : 3628 266 : ysLeuGluAsnValPheThrLeuIleValLeuGlyGluValLeuPheLeuAlaMetLeuLeu : 285 |||||:!!.!.|||||| !:!!.!!||||||!.!:!!||||||.!!!!!::!:!!|||:!! ysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeuLeuMet 3629 : AACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATG : 3688 286 : CysCysLeuGlyPheGlnIlePheLeu >>>> Target Intron 2 >>>> MetSer : 296 ||| ! !|||!:! :!: ! :!! 457 bp ..! CysLeuAspGlyTyr---LeuValMet++ ++GluAsp 3689 : TGCCTCGATGGATAT---TTGGTGATGgt.........................agGAAGAT : 4175 297 : SerProProAlaArgArgIleSerLeuValIleGlyMetMetGlyIleCysSerGlnLeuPh : 317 !!!||| ! !!:!|||:!!!!!!!!:!!.!! !:!:! !||| ! !!!||||||!! ThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLe 4176 : ACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTT : 4238 318 : eMetPheSerTyrCysTrpAspGlyLeuValArgGluSerValAsnValGlyGlnAlaAlaP : 338 .||||||!!!||| !!!! ||| !!|||:!!|||||||||:!!||||||!.!.!.||| !! uMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIleT 4239 : GATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATAT : 4301 339 : heAlaGlyProTrpSerIlePheSerIleLysGluGlyGlyLysSerLeuArgSerAspVal : 358 :!! ! !! !!|||! ! !!!. !!!!: ! ..!..!|||::!! !||||||!.!|||:!! yrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAspLeu 4302 : ACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTG : 4361 359 : LeuIleIleIleMetArgSerAsnLysAlaCysCysLeuThrAlaAlaGlyPhePheProVa : 379 !.!!:!!||| ||||||!.. ! !!|||||||||||||||..!|||||||||||||| ThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePheProVa 4362 : ACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGT : 4424 380 : lSerLeuGluThrCysThrAla >>>> Target Intron 3 >>>> ValLeuSerTh : 390 |||||||||||||! !|||:!! 1970 bp |||:!!||||| lSerLeuGluThrTyrThrSer++ ++ValIleSerTh 4425 : GTCACTGGAAACGTACACTTCGgt.........................agGTTATAAGTAC : 6427 391 : rAlaMetSerTyrPheThrLeuLeuArgHisSerAlaProAsp : 404 ||||:!!|||||||||||||||||||||!!. !! ! !||| rAlaValSerTyrPheThrLeuLeuArgGlnArgIleGluAsp 6428 : AGCAGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAGGAC : 6471 vulgar: gi|383857335|ref|XP_003704160.1| 150 404 . KQ414828.1 2882 6471 + 532 M 34 102 5 0 2 I 0 402 3 0 2 M 61 183 G 1 0 M 44 132 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2883 6471 532 + . gene_id 2 ; sequence gi|383857335|ref|XP_003704160.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2883 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2883 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 0 ; deletions 2 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6471 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6471 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2883 6471 532 + . alignment_id 2 ; Query gi|383857335|ref|XP_003704160.1| ; Align 2883 151 102 ; Align 3391 185 183 ; Align 3574 247 132 ; Align 3706 292 9 ; Align 4172 295 276 ; Align 6418 387 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857335|ref|XP_003704160.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 450 Query range: 183 -> 404 Target range: 32801 -> 34313 184 : GlnMetLeuCysValTyrHisValAlaIleSerTyrPheCysPheAspAsnPheLeuCys : 203 ||| |||! !||||||!!.|||!.!:!:!!!|||.!!||||||||||||...... GlnAlaLeuSerValTyrGlnValGlyValCysTyrLeuCysPheAspAsnIlePhePhe 32802 : CAGGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCTttgataacatttttttc : 32859 204 : LeuValCysLeuAsnIleThrGlyGlnPheArgIleLeuGlnHisArgLeuAlaSerLeu : 223 ::::::||||||:!!:!:.!!|||||||||||||||||||||:!!|||:!!|||!:!:!! IleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnVal 32860 : attatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTG : 32919 224 : AsnGlyMetLysLys<->ThrAspAspGluAspSerAspAlaTyrValSerAspAspAla : 242 :::|||:!:!..:!! ..! ! ..!.!.|||!:! ::! !.!..! !!:!! SerGlyLeuSerGluIleValLysSerAsnAspAsnThrSerThrAlaGluLeuTyrSer 32920 : TCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACAAGCACGGCTGAATTATACTCA : 32979 243 : IleLysTyrArgThrLysLeuLysSerCysIleArgHisHisGlnThrLeuIleAsnTyr : 262 |||! ! !! !|||!!!|||!:!||||||!:!!!.||||||.!!||||||...::: GluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPhe 32980 : GAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTaattgaattt : 33039 263 : CysArgLysLeuGluAsnValPheThrLeuIleValLeuGlyGluValLeuPheLeuAla : 282 |||... ||||||.!.|||||||||:!!||||||||||||:!!||||||.!.!!!::! CysGluIleLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMetPheSer 33040 : tgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTAATGTTTAGC : 33099 283 : MetLeuLeuCysCysLeuGlyPheGlnIlePheLeu >>>> Target Intron 1 > : 295 !!::!!:!!|||! ! !|||!:!:!!:!!.!!||| 406 bp IleIleIleCysPheAlaGlyTyrGluValLeuLeu++ 33100 : ATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGgt...................... : 33140 296 : >>> MetSerSerProProAlaArgArgIleSerLeuValIleGlyMetMetGlyIleC : 313 !!:!!!! !||| !! ! !|||:!!:!!!!!..! ! !:!!!!: ! ! ++IleThrLeuProPheGluSerArgValAlaPheThrCysPheLeuIleThrGlyV 33141 : ...agATAACGTTACCATTTGAATCGCGCGTTGCTTTCACGTGCTTCTTGATTACGGGCG : 33598 314 : ysSerGlnLeuPheMetPheSerTyrCysTrpAspGlyLeuValArgGluSerValAsnV : 333 |||||||||!::||||||!!!||| !!!! :!! !!:!!..!! !||||||:!!|||: alSerGlnLeuTrpMetPheThrTyrSerCysAsnCysIleThrThrGluSerLeuAsnI 33599 : TGAGTCAACTATGGATGTTCACGTACAGTTGCAATTGCATAACAACAGAAAGCCTGAACA : 33658 334 : alGlyGlnAlaAlaPheAlaGlyProTrpSerIlePheSerIleLysGluGlyGlyLysS : 353 !!!.!:!!:!!!.!!:!||||||||||||! !! !!!. !!!!: ::: |||||| leAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysL 33659 : TCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaac : 33718 354 : erLeuArgSerAspValLeuIleIleIleMetArgSerAsnLysAlaCysCysLeuThrA : 373 ||||||!.!|||:!!! !:!::!!|||:!!|||:!!!..::! !!! !..!||||||| euLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerAlaLeuThrA 33719 : tgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACTG : 33778 374 : laAlaGlyPhePheProValSerLeuGluThrCysThrAla >>>> Target Intro : 387 ||..!||||||||| !!:!!!!!|||||||||! !||| ! 440 bp laCysGlyPhePheSerIleThrLeuGluThrPheThrLys++ 33779 : CCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTACTAAGgt................. : 33822 388 : n 2 >>>> ValLeuSerThrAlaMetSerTyrPheThrLeuLeuArgHisSerAlaPr : 403 :!!:!!||||||:!!|||||||||||||||||||||!:!!!.|||||| ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnSerAlaGl 33823 : ........agATCATGAGTACATCAATGTCGTATTTCACCCTACTAAAACAAAGTGCCGA : 34308 404 : oAsp : 404 !||| uAsp 34309 : GGAC : 34313 vulgar: gi|383857335|ref|XP_003704160.1| 183 404 . KQ414828.1 32801 34313 + 450 M 45 135 G 0 3 M 66 198 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32802 34313 450 + . gene_id 3 ; sequence gi|383857335|ref|XP_003704160.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32802 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32802 33137 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 2 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34313 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34313 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32802 34313 450 + . alignment_id 3 ; Query gi|383857335|ref|XP_003704160.1| ; Align 32802 184 135 ; Align 32940 229 198 ; Align 33544 295 276 ; Align 34260 387 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857335|ref|XP_003704160.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 415 Query range: 187 -> 408 Target range: 10840 -> 13170 188 : ValTyrHisValAlaIleSerTyrPheCysPheAspAsnPheLeuCysLeuValCysLeu : 207 :!!||| !..!!.!|||!!!||||||||||||||||||.!!!!!|||:!!:!! !!:!! LeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerVal 10841 : CTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTG : 10898 208 : AsnIleThrGlyGlnPheArgIleLeuGlnHisArgLeuAlaSerLeuAsnGlyMetLys : 227 :!!:!:!:!|||||||||||||||||||||:!!||||||.!!!.!|||::!! !:!::!! HisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGln 10899 : CATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAA : 10958 228 : <->LysThrAspAspGluAspSerAspAlaTyrValSerAspAspAlaIleLysTyrArg : 246 :!!! !...::::::::: :::::! :!!..!||| !.!! !!:!! ! ! TyrGlnIleSerGluLysAsnMetGluSerValLeuGluAspCysThrArgArgSerTyr 10959 : TATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGTAGATCTTAC : 11018 247 : ThrLysLeuLysSerCysIleArgHisHisGlnThrLeuIleAsnTyrCysArgLysLeu : 266 !|||!!!||||||! !:!!|||!!.|||||||||||||||:!!|||! !..!|||||| GluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLysLeu 11019 : GAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAGCTT : 11078 267 : GluAsnValPheThrLeuIleValLeuGlyGluValLeuPheLeuAlaMetLeuLeuCys : 286 |||:!!|||!:!||| !|||:!!||||||:!!||||||.!.!!!::!:!!|||:!!||| GluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIleCys 11079 : GAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATTTGC : 11138 287 : CysLeuGlyPheGlnIlePheLeuMetSer<->SerProProAla{A} >>>> Targe : 301 !!!!|||!:!||||||!!.|||:!:||| |||! !||| !!{|} 1 LeuPheGlyTyrGlnIleLeuLeuValSerIleSerLeuProPro{A}-+ 11139 : CTCTTTGGTTATCAGATATTATTGGTTAGTATTTCACTTCCTCCA{A}ct.......... : 11189 302 : t Intron 1 >>>> {rg}ArgIleSerLeuValIleGlyMetMetGlyIleCysSer : 314 302 bp {||}|||! !! !!!!:!!.!! !!!: ||| ! ! +-{rg}ArgSerIlePheMetPheLeuIleCysGlyAlaMetVal 11190 : ...............aa{GG}CGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTT : 12527 315 : GlnLeuPheMetPheSerTyrCysTrpAspGlyLeuValArgGluSerValAsnValGly : 334 !||||||||||||!!!||| !!!! :!! !:!!:!!..!:!!|||! !|||:!!!.! LeuLeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAla 12528 : TTATTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCT : 12587 335 : GlnAlaAlaPheAlaGlyProTrpSerIlePheSerIleLysGluGlyGlyLysSerLeu : 354 ||||||!:!:!!!.!! !|||!!! !.!. !!!!:!!.:!! !||||||!.!||| PheAlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeu 12588 : TTTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTA : 12647 355 : ArgSerAspValLeuIleIleIleMetArgSerAsnLysAlaCysCysLeuThrAlaAla : 374 ||| !|||:!!:!!!!::!!||| !||||||!..::!!.!||||||||||||||| ! ArgHisAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsn 12648 : CGGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAAT : 12707 375 : GlyPhePheProValSerLeuGluThrCysThr--{A} >>>> Target Intron 2 : 386 |||||||||||||||||||||||||||! !|||##{!} 357 bp GlyPhePheProValSerLeuGluThrTyrThr##{G}++ 12708 : GGATTTTTCCCTGTGTCCTTAGAAACTTATACTAC{G}gt.................... : 12748 387 : >>>> {la}ValLeuSerThrAlaMetSerTyrPheThrLeuLeuArgHisSerAlaP : 403 { !}:::|||||||||||| !|||||||||||||||||||||:!!!:!!.! +-{lu}IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnValG 12749 : .....ac{ag}attttgAGTACCGCGGCGTCGTACTTCACATTATTGAGAAATAACGTAG : 13153 404 : roAspLeuGlnThrAla : 408 !|||:!! ! !||| luAspValValLysAla 13154 : AAGATGTAGTTAAAGCA : 13170 vulgar: gi|383857335|ref|XP_003704160.1| 187 408 . KQ414828.1 10840 13170 + 415 M 40 120 G 0 3 M 69 207 G 0 3 M 4 12 S 0 1 5 0 2 I 0 1298 3 0 2 S 1 2 M 84 252 F 0 2 S 0 1 5 0 2 I 0 353 3 0 2 S 1 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10841 13170 415 + . gene_id 4 ; sequence gi|383857335|ref|XP_003704160.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 10841 11186 . + . KQ414828.1 exonerate:protein2genome:local exon 10841 11186 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 11187 11188 . + . intron_id 1 ; splice_site "CT" KQ414828.1 exonerate:protein2genome:local intron 11187 12488 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12487 12488 . + . intron_id 0 ; splice_site "AA" KQ414828.1 exonerate:protein2genome:local cds 12489 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12489 12745 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13102 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13101 13102 . + . intron_id 1 ; splice_site "ac" KQ414828.1 exonerate:protein2genome:local cds 13103 13170 . + . KQ414828.1 exonerate:protein2genome:local exon 13103 13170 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10841 13170 415 + . alignment_id 4 ; Query gi|383857335|ref|XP_003704160.1| ; Align 10841 188 120 ; Align 10964 228 207 ; Align 11174 297 12 ; Align 12491 302 252 ; Align 13105 387 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857335|ref|XP_003704160.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 371 Query range: 183 -> 387 Target range: 22722 -> 23829 184 : GlnMetLeuCysValTyrHisValAlaIleSerTyrPheCysPheAspAsnPheLeuCys : 203 ||| |||! !||||||!!.|||::! !!!|||.!!||||||||| ...... GlnAlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIlePhePhe 22723 : CAGGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatttttttc : 22780 204 : LeuValCysLeuAsnIleThrGlyGlnPheArgIleLeuGlnHisArgLeuAlaSerLeu : 223 ::::::||||||:!!:!:.!!|||||||||||||||||||||:!!|||:!!|||!:!:!! IleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnVal 22781 : attttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTG : 22840 224 : AsnGlyMetLysLysThrAspAspGluAspSerAspAlaTyrValSerAsp<->AspAla : 242 :::|||:!:!..:!!! !! ! .....!..!:!! !! !..!..!!!: !!:!! SerGlyLeuSerGluIleValLysSerSerGluAsnProSerThrAspGluLeuTyrSer 22841 : TCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAATTATACTCA : 22900 243 : IleLysTyrArgThrLysLeuLysSerCysIleArgHisHisGlnThrLeuIleAsnTyr : 262 |||! ! !! !|||!!!|||!:!||||||!:!!!.||||||.!!||||||.!.!:! GluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPhe 22901 : GAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAATTT : 22960 263 : CysArgLysLeuGluAsnValPheThrLeuIleValLeuGlyGluValLeuPheLeuAla : 282 ||| !! !||||||.!.|||||||||:!!||||||||||||:!!||||||.!.! !::! CysAlaThrLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMetSerSer 22961 : TGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCTAATGTCTAGC : 23020 283 : MetLeuLeuCysCysLeuGlyPheGlnIlePheLeuMetSerSerProProAla{A} > : 301 !!:|||:!!|||! !:!!|||!:!|||:!!.!!|||:!!|||! ! ! ! !{!} IleLeuIleCysPheIleGlyTyrGlnValLeuLeuValSerIleGluSerTyr{T}-+ 23021 : ATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGGTGAGTATCGAAAGCTAT{A}at. : 23080 302 : >>> Target Intron 1 >>>> {rg}ArgIleSerLeuValIleGlyMetMetGly : 311 492 bp { !}|||:!!:!!!!!!.! ! !:!!||| ! +-{hr}ArgValAlaPheAlaCysPheLeuMetMet 23081 : ........................at{CG}CGCGTTGCTTTCGCGTGCTTCTTGATGATG : 23599 312 : IleCysSerGlnLeuPheMetPheSerTyrCysTrpAspGlyLeuValArgGluSerVal : 331 ! |||||||||!::||||||!!!||| !!!! ||| !!:!!..!! !||||||:!! GlyMetSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeu 23600 : GGCATGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCATAACAACAGAAAGCCTG : 23659 332 : AsnValGlyGlnAlaAlaPheAlaGlyProTrpSerIlePheSerIleLysGluGlyGly : 351 |||:!!!.!:!!:!!!.!!:!||||||||||||! !! !!!. !!!!: ! :!! !||| AsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGly 23660 : AACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATGGACAAATTTGGA : 23719 352 : LysSerLeuArgSerAspValLeuIleIleIleMetArgSerAsnLysAlaCysCysLeu : 371 ||| !||||||!.!!!::!!! !!!::!!|||:!!|||:!!!..::! !!! !..!||| LysLeuLeuArgLysGluLeuGlnMetLeuIleLeuArgAlaArgArgProSerAlaLeu 23720 : AAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTG : 23779 372 : ThrAlaAlaGlyPhePheProValSerLeuGluThrCysThrAlaVal : 387 ||||||..!||||||||| !!:!!||||||||||||! !||| !||| ThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 23780 : ACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 23829 vulgar: gi|383857335|ref|XP_003704160.1| 183 387 . KQ414828.1 22722 23829 + 371 M 57 171 G 0 3 M 60 180 S 0 1 5 0 2 I 0 488 3 0 2 S 1 2 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22723 23829 371 + . gene_id 5 ; sequence gi|383857335|ref|XP_003704160.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22723 23077 . + . KQ414828.1 exonerate:protein2genome:local exon 22723 23077 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23078 23079 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 23078 23569 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 23568 23569 . + . intron_id 0 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local cds 23570 23829 . + . KQ414828.1 exonerate:protein2genome:local exon 23570 23829 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22723 23829 371 + . alignment_id 5 ; Query gi|383857335|ref|XP_003704160.1| ; Align 22723 184 171 ; Align 22897 241 180 ; Align 23572 302 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857335|ref|XP_003704160.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 232 Query range: 183 -> 306 Target range: 37865 -> 38237 184 : GlnMetLeuCysValTyrHisValAlaIleSerTyrPheCysPheAspAsnPheLeuCys : 203 ||| |||! !||||||!!.|||::! !!!|||.!!||||||||| ...... GlnAlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIlePhePhe 37866 : CAGGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatttttttc : 37923 204 : LeuValCysLeuAsnIleThrGlyGlnPheArgIleLeuGlnHisArgLeuAlaSerLeu : 223 ::::::||||||:!!:!:.!!|||||||||||||||||||||:!!|||:!!|||!:!:!! IleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnVal 37924 : attttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTG : 37983 224 : AsnGlyMetLysLysThrAspAspGluAspSerAspAlaTyrValSerAsp<->AspAla : 242 :::|||:!:!..:!!! !! ! .....!..!:!! !! !..!..!!!: !!:!! SerGlyLeuSerGluIleValLysSerSerGluAsnProSerThrAspGluLeuTyrSer 37984 : TCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAATTATACTCA : 38043 243 : IleLysTyrArgThrLysLeuLysSerCysIleArgHisHisGlnThrLeuIleAsnTyr : 262 |||! ! !! !|||!!!|||!:!||||||!:!!!.||||||.!!||||||.!.!:! GluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPhe 38044 : GAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAATTT : 38103 263 : CysArgLysLeuGluAsnValPheThrLeuIleValLeuGlyGluValLeuPheLeuAla : 282 ||| !! !||||||.!.|||||||||:!!|||!.!||||||:!!||||||.!.!!!::! CysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnValLeuMetPheSer 38104 : TGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCTAATGTTTAGC : 38163 283 : MetLeuLeuCysCysLeuGlyPheGlnIlePheLeuMetSerSerProProAlaArgArg : 302 !!:|||:!!|||! !:!!! !!:!||| !.!!|||:!!|||! ! !! ! !!.!!:! IleLeuIleCysPheValValTyrGlnAlaLeuLeuValSerIleValArgTyrAsnLys 38164 : ATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGGTGAGTATCGTTCGCTATAATAAA : 38223 303 : IleSerLeuVal : 306 !|||:::::: TyrSerMetIle 38224 : TACTCTatgata : 38237 vulgar: gi|383857335|ref|XP_003704160.1| 183 306 . KQ414828.1 37865 38237 + 232 M 57 171 G 0 3 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37866 38237 232 + . gene_id 6 ; sequence gi|383857335|ref|XP_003704160.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37866 38237 . + . KQ414828.1 exonerate:protein2genome:local exon 37866 38237 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37866 38237 232 + . alignment_id 6 ; Query gi|383857335|ref|XP_003704160.1| ; Align 37866 184 171 ; Align 38040 241 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857335|ref|XP_003704160.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 221 Query range: 301 -> 404 Target range: 28526 -> 29245 302 : ArgIleSerLeuValIleGlyMetMetGlyIleCysSerGlnLeuPheMetPheSerTyr : 321 |||:!!:!!|||!.! ! ! !||| ! ! |||||||||!::||||||!!!||| ArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuTrpMetPheThrTyr 28527 : CGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTATGGATGTTCACGTAC : 28584 322 : CysTrpAspGlyLeuValArgGluSerValAsnValGlyGlnAlaAlaPheAlaGlyPro : 341 !!!! ||| !!:!!..!! !||||||:!!|||:!!!.!:!!:!!!.!!:!||||||||| SerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyPro 28585 : AGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCA : 28644 342 : TrpSerIlePheSerIleLysGluGlyGlyLysSerLeuArgSerAspValLeuIleIle : 361 |||! !! !!!. !!!!: ::: |||||| ||||||!.!|||:!!! !:!::!! TrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeu 28645 : TGGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTC : 28704 362 : IleMetArgSerAsnLysAlaCysCysLeuThrAlaAlaGlyPhePheProValSerLeu : 381 |||:!!|||:!!!..::! !!! !! !|||||||||..!||||||||| !!:!!|||||| IleLeuArgAlaArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeu 28705 : ATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTC : 28764 382 : GluThrCysThrAla >>>> Target Intron 1 >>>> ValLeuSerThrAlaM : 392 ||||||! !||| ! 410 bp :!!:!!||||||:!!| GluThrPheThrLys++ ++IleMetSerThrSerM 28765 : GAAACCTTTACTAAGgt.........................agATCATGAGTACATCAA : 29207 393 : etSerTyrPheThrLeuLeuArgHisSerAlaProAsp : 404 ||||||||||||||||||||!:!!!.!!! ! !||| etSerTyrPheThrLeuLeuLysGlnCysIleGluAsp 29208 : TGTCGTATTTCACATTATTAAAACAATGTATCGAGGAC : 29245 vulgar: gi|383857335|ref|XP_003704160.1| 301 404 . KQ414828.1 28526 29245 + 221 M 85 255 5 0 2 I 0 406 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28527 29245 221 + . gene_id 7 ; sequence gi|383857335|ref|XP_003704160.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 28527 28781 . + . KQ414828.1 exonerate:protein2genome:local exon 28527 28781 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 28782 28783 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 28782 29191 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 29190 29191 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 29192 29245 . + . KQ414828.1 exonerate:protein2genome:local exon 29192 29245 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28527 29245 221 + . alignment_id 7 ; Query gi|383857335|ref|XP_003704160.1| ; Align 28527 302 255 ; Align 29192 387 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857335|ref|XP_003704160.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 313 -> 387 Target range: 38538 -> 38760 314 : SerGlnLeuPheMetPheSerTyrCysTrpAspGlyLeuValArgGluSerValAsnVal : 333 |||||||||!::||||||!!!||| !!!! ||| !!:!!..!! !||||||:!!|||:!! SerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIle 38539 : AGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATC : 38596 334 : GlyGlnAlaAlaPheAlaGlyProTrpSerIlePheSerIleLysGluGlyGlyLysSer : 353 !.!:!!:!!!.!!:!||||||||||||! !! !!!. !!!!: ::: |||||| AlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeu 38597 : GCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaactg : 38656 354 : LeuArgSerAspValLeuIleIleIleMetArgSerAsnLysAlaCysCysLeuThrAla : 373 ||||||!.!|||:!!! !:!::!!|||:!!|||:!!!..::! !!! !! !||||||||| LeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThrAla 38657 : CTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCC : 38716 374 : AlaGlyPhePheProValSerLeuGluThrCysThrAlaVal : 387 ..!||||||||| !!:!!||||||||||||! !||| !||| CysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 38717 : TGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 38760 vulgar: gi|383857335|ref|XP_003704160.1| 313 387 . KQ414828.1 38538 38760 + 175 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38539 38760 175 + . gene_id 8 ; sequence gi|383857335|ref|XP_003704160.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38539 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38539 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38539 38760 175 + . alignment_id 8 ; Query gi|383857335|ref|XP_003704160.1| ; Align 38539 314 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857335|ref|XP_003704160.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 0 -> 64 Target range: 15100 -> 15292 1 : MetArgLeuLeuArgSerLysAspArgSerIleIleTrpThrCysPheLeuMetLysVal : 20 |||!!! !!!!! !!!! ! |||! !||||||! ! !|||! ! !!!!!||||||:!! MetSerSerPheThrThrAspAspIleSerIleSerLeuThrSerValPheMetLysIle 15101 : ATGAGTAGTTTCACCACCGATGACATATCAATCAGCCTGACGTCCGTTTTCATGAAGATC : 15158 21 : IleGlyIleTrpIleAlaThrAsnArgAlaGluGlnIleArgArgLysLeuAlaLeuVal : 40 :!!|||:!:|||!!:|||:!!|||||| !|||||| ! !|||!!.:!!.!!||| ! ValGlyLeuTrpMetAlaSerAsnArgPheGluGlnArgValArgAsnIleThrLeuCys 15159 : GTTGGACTGTGGATGGCGTCGAACCGTTTCGAGCAACGAGTACGAAATATCACGCTGTGT : 15218 41 : TyrThrLeuMetAlaLeuSerIleAlaLeuGlyIleAlaLeuArgAspMetHisPheSer : 60 |||||||||!!:|||:!! !.!!|||||| !!||| !:!!! !|||:!!:!!!:!||| TyrThrLeuIleAlaIleLeuPheAlaLeuTrpIleGlnMetThrAspLeuTyrTyrSer 15219 : TACACGCTGATCGCGATTCTCTTCGCCCTGTGGATACAAATGACGGATTTGTATTACTCG : 15278 61 : TrpGlyAsnPhe : 64 ||||||:!!||| TrpGlyAspPhe 15279 : TGGGGAGATTTT : 15292 vulgar: gi|383857335|ref|XP_003704160.1| 0 64 . KQ414828.1 15100 15292 + 147 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15101 15292 147 + . gene_id 9 ; sequence gi|383857335|ref|XP_003704160.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 15101 15292 . + . KQ414828.1 exonerate:protein2genome:local exon 15101 15292 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15101 15292 147 + . alignment_id 9 ; Query gi|383857335|ref|XP_003704160.1| ; Align 15101 1 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857335|ref|XP_003704160.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 0 -> 64 Target range: 31105 -> 31297 1 : MetArgLeuLeuArgSerLysAspArgSerIleIleTrpThrCysPheLeuMetLysVal : 20 |||!!!||| ! ! !!:!!||| !|||.!!! !! .!! !|||!!!:!! ! ||| MetSerLeuLysTyrArgGlnAspValSerPheArgLeuAlaAsnPhePheLeuTyrVal 31106 : ATGAGCTTGAAATATCGTCAAGACGTTTCCTTTAGATTAGCCAACTTTTTTCTGTATGTT : 31163 21 : IleGlyIleTrpIleAlaThrAsnArgAlaGluGlnIleArgArgLysLeuAlaLeuVal : 40 :!!|||.!!|||.!!|||.!!|||||| !|||:!! !|||!!. !|||:!!:!! ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeu 31164 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCTGCGATTCTG : 31223 41 : TyrThrLeuMetAlaLeuSerIleAlaLeuGlyIleAlaLeuArgAspMetHisPheSer : 60 ||||||:!!:!:.!!:!!! !.!!!.!:!! !!:!! !||||||! :!::!!|||||| TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSer 31224 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGGCTTTATTTCTCC : 31283 61 : TrpGlyAsnPhe : 64 |||||||||||| TrpGlyAsnPhe 31284 : TGGGGAAACTTT : 31297 vulgar: gi|383857335|ref|XP_003704160.1| 0 64 . KQ414828.1 31105 31297 + 125 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31106 31297 125 + . gene_id 10 ; sequence gi|383857335|ref|XP_003704160.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 31106 31297 . + . KQ414828.1 exonerate:protein2genome:local exon 31106 31297 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31106 31297 125 + . alignment_id 10 ; Query gi|383857335|ref|XP_003704160.1| ; Align 31106 1 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857335|ref|XP_003704160.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 0 -> 64 Target range: 21030 -> 21222 1 : MetArgLeuLeuArgSerLysAspArgSerIleIleTrpThrCysPheLeuMetLysVal : 20 |||!!!||| ! ! !!:!!||| !|||:!!! !! .!! !|||! !:!! ! ||| MetSerLeuLysTyrArgGlnAspValSerValArgLeuAlaAsnPheTyrLeuTyrVal 21031 : ATGAGCTTGAAATATCGCCAAGACGTTTCCGTTAGATTAGCCAATTTTTATCTGTATGTC : 21088 21 : IleGlyIleTrpIleAlaThrAsnArgAlaGluGlnIleArgArgLysLeuAlaLeuVal : 40 :!!|||.!!|||.!!|||.!!|||||| !|||:!! ! !!!!. !|||:!!:!! ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheGlyAsnAlaAlaIleLeu 21089 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCGGAAACGCGGCGATTCTG : 21148 41 : TyrThrLeuMetAlaLeuSerIleAlaLeuGlyIleAlaLeuArgAspMetHisPheSer : 60 ||||||:!!:!:.!!:!!! !.!!!.!:!! !!:!! !||||||! :!::!!|||||| TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSer 21149 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGACTTTATTTCTCC : 21208 61 : TrpGlyAsnPhe : 64 |||||||||||| TrpGlyAsnPhe 21209 : TGGGGAAACTTT : 21222 vulgar: gi|383857335|ref|XP_003704160.1| 0 64 . KQ414828.1 21030 21222 + 120 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21031 21222 120 + . gene_id 11 ; sequence gi|383857335|ref|XP_003704160.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 21031 21222 . + . KQ414828.1 exonerate:protein2genome:local exon 21031 21222 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21031 21222 120 + . alignment_id 11 ; Query gi|383857335|ref|XP_003704160.1| ; Align 21031 1 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857335|ref|XP_003704160.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 0 -> 64 Target range: 26060 -> 26252 1 : MetArgLeuLeuArgSerLysAspArgSerIleIleTrpThrCysPheLeuMetLysVal : 20 |||!!!||| ! ! !!:!!||| !|||:!!! !! .!! !|||!!!:!! ! ||| MetSerLeuLysTyrArgGlnAspValSerValArgLeuAlaAsnPhePheLeuTyrVal 26061 : ATGAGCTTGAAATATCGTCAAGACGTTTCCGTTAGATTAGCCAACTTTTTTCTGTATGTC : 26118 21 : IleGlyIleTrpIleAlaThrAsnArgAlaGluGlnIleArgArgLysLeuAlaLeuVal : 40 :!!|||.!!|||.!!|||.!!|||||| !|||:!! !|||!!. !|||:!!:!! ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeu 26119 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCGGCGATTCTG : 26178 41 : TyrThrLeuMetAlaLeuSerIleAlaLeuGlyIleAlaLeuArgAspMetHisPheSer : 60 ||||||:!!:!:.!!:!!! !.!!!.!:!! !!:!! !||| !!! :!::!!|||:!! TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuGlyGlyLeuTyrPheAla 26179 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGGGAGGGCTTTATTTCGCC : 26238 61 : TrpGlyAsnPhe : 64 |||||||||||| TrpGlyAsnPhe 26239 : TGGGGAAACTTT : 26252 vulgar: gi|383857335|ref|XP_003704160.1| 0 64 . KQ414828.1 26060 26252 + 118 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26061 26252 118 + . gene_id 12 ; sequence gi|383857335|ref|XP_003704160.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 26061 26252 . + . KQ414828.1 exonerate:protein2genome:local exon 26061 26252 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 26061 26252 118 + . alignment_id 12 ; Query gi|383857335|ref|XP_003704160.1| ; Align 26061 1 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383861632|ref|XP_003706289.1| PREDICTED: putative odorant receptor 85e [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 300 -> 399 Target range: 4201 -> 6480 301 : PheIleValTyrLeuThrAlaValMetIleGlnLeuMetPheTrpCysTrpProGlyGluIl : 321 |||:!: !!:!!||||||!.! !:!! !||||||:!!.!.!:: !!:: ! !!!!: PheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCy 4202 : TTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGATGTTCACCTACAGCTGCGATTG : 4262 322 : eLeuIleGlnGluSerLeuGluValGlyTyrAlaValTyr<-><-><-><->LeuAsnIleP : 338 !||||||!:!|||||||||.!.|||!.! !!|||:!!||| :!!:!!:!:| sLeuIleArgGluSerLeuAsnValAlaAsnAlaIleTyrAspCysSerTrpIleHisLeuP 4263 : CCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATATACGACTGCTCGTGGATTCACTTGC : 4325 339 : roTrpTyrAsnMetGluProAlaCysArgArgGlnLeuLeuLeuValIleLeuArgSerGln : 358 || ! !!!.. ! !! ! ! |||!:!.!.||| !!!!|||||| !||||||::! roMetAspArgSerGlyArgMetLeuArgLysAspLeuThrPheValIleGlyArgSerArg 4326 : CAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGA : 4385 359 : AsnValCysSerIleSerAlaLeuThrPheArgThrValCysIleHisSerLeuThrThr : 379 !|||!!!:!!!!!|||! ! !||| ! !!|||! :!:.!.!!!! !|||:!! ValProCysCysLeuThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 4386 : GTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt : 4448 380 : >>>> Target Intron 1 >>>> ValPheAsnAlaAlaAlaSerTyrPheThrLeuLe : 390 1970 bp |||.!.!:!.!!|||!.!||||||||||||||||| ++ValIleSerThrAlaValSerTyrPheThrLeuLe 4449 : .........................agGTTATAAGTACAGCAGTGTCGTACTTCACACTGTT : 6451 391 : uArgGlnMetGluGluLysAlaMetSer : 399 ||||||| !||| ! ::!! ||| uArgGlnArgIleGluAspSerAsnSer 6452 : AAGGCAACGTATAGAGGACAGCAATAGT : 6480 vulgar: gi|383861632|ref|XP_003706289.1| 300 399 . KQ414828.1 4201 6480 + 112 M 34 102 G 0 12 M 44 132 5 0 2 I 0 1966 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 4202 6480 112 + . gene_id 1 ; sequence gi|383861632|ref|XP_003706289.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 4202 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4202 4447 . + . insertions 12 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6480 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6480 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 4202 6480 112 + . alignment_id 1 ; Query gi|383861632|ref|XP_003706289.1| ; Align 4202 301 102 ; Align 4316 335 132 ; Align 6418 379 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383861632|ref|XP_003706289.1| PREDICTED: putative odorant receptor 85e [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 300 -> 399 Target range: 19386 -> 19918 301 : PheIleValTyrLeuThrAlaValMetIleGlnLeuMetPheTrpCysTrpProGlyGlu : 320 |||||| !!:!!:!! !||| !||| !||||||:!!.!.!:: !!:: ! !!!!: PheIlePheHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSerCysAsp 19387 : TTCATCTTTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGCTGCGAC : 19444 321 : IleLeuIleGlnGluSerLeuGluValGlyTyrAlaValTyrLeuAsn<-><-><-><-> : 337 !:!!|||::!|||||| !.....!!.! ! ||||||||| !..! CysIleIleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyProTrpThrLeu 19445 : TGCATCATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGACACTT : 19504 338 : IleProTrpTyrAsnMetGluProAlaCysArgArgGlnLeuLeuLeuValIleLeuArg : 356 :!!||| ! ! ! ! ! ! |||!:!.!.|||:!!|||||||||:!!||| LeuProMetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuValIleMetArg 19505 : TTACCAATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCATGAGA : 19564 357 : SerGlnAsnValCysSerIleSerAlaLeuThrPheArgThrValCysIleHisSerLeu : 376 |||... !|||!!!:!:!!!||| ! !||| !..!|||! !:!!.!.!!!! ! SerSerValProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGluThrTyr 19565 : TCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAACGTAC : 19624 377 : ThrThr >>>> Target Intron 1 >>>> ValPheAsnAlaAlaAlaSerTyrP : 387 ||| ! 223 bp |||!!.!:!.!!||||||||||||| ThrGly++ ++ValLeuSerThrAlaAlaSerTyrP 19625 : ACAGGGgt.........................agGTTTTAAGCACCGCAGCCTCATACT : 19880 388 : heThrLeuLeuArgGlnMetGluGluLysAlaMetSer : 399 |||||||||||!:!|||! ..!|||!!.||| ||| heThrLeuLeuLysGlnArgSerGluAsnAlaAspSer 19881 : TTACGTTGCTGAAGCAAAGATCAGAGAATGCCGACAGT : 19918 vulgar: gi|383861632|ref|XP_003706289.1| 300 399 . KQ414828.1 19386 19918 + 107 M 36 108 G 0 12 M 42 126 5 0 2 I 0 219 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 19387 19918 107 + . gene_id 2 ; sequence gi|383861632|ref|XP_003706289.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 19387 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19387 19632 . + . insertions 12 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19918 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19918 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 19387 19918 107 + . alignment_id 2 ; Query gi|383861632|ref|XP_003706289.1| ; Align 19387 301 108 ; Align 19507 337 126 ; Align 19856 379 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754615|ref|XP_012138734.1| PREDICTED: odorant receptor 24a-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 505 Query range: 109 -> 381 Target range: 1243893 -> 1242521 110 : LeuAlaSerThrValAlaArgIleTyrArgThrCysIleLeuSerSerMetThrIl : 128 ||| ||||||::: ! ! ! ! ! !:!:!!!! !! ! !! !|| LeuProSerThrIleLeuValSerLeuSerGlyThrLeuPheTyrPheSerIleIl 1243893 : cttccatcgactatactcGTCTCTCTTTCAGGTACTTTGTTCTATTTCTCGATAAT : 1243839 129 : ePheLeuSerValThrLeuLeuProSerValLeuAspValIleLeuProLeuAsnG : 147 ||||:!!! ! !! !!|||:!!||| !!:!!|||||||||:!!! !|||||||||| ePheValLeuPheProLeuIleProProIleLeuAspValValSerProLeuAsnG 1243838 : ATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATG : 1243782 148 : luThrArgProArgGlnGlnLeuPheAsnValGluTyrLeuPhePheAspLysAsp : 165 |||||||| !!||| !::::::......::::::|||||| ||||||! ::: luThrArgSerArgIleGluValIleLysLeuGlnTyrLeu---PheAspMetGlu 1243781 : AGACTCGATCTCGGATAGaagtaataaaattgcaataccTG---TTCGACAtggag : 1243731 166 : GluTyrTyrTyrSerValTyrLeuGlnLeuSerTrpSerThrPheValIleValMe : 184 ::: :::||||||:::|||:!! ! !.!!|||!!!:!!|||:!!! !:!!|| LysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMe 1243730 : aagaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGAT : 1243674 185 : tValIleGlyPheValAspSerLeuTyrIleIleIleIleHisHisSerSerGlyL : 203 ||||||| ! !:!!|||:!!||||||:!::!!||||||||||||!!!!!!|||| tValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGlyL 1243673 : GGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCT : 1243617 204 : euPheAlaValCys{Gl} >>>> Target Intron 1 >>>> {y}GluGln : 210 ||||||||||||||{||} 318 bp {|}...||| euPheAlaValCys{Gl}++ ++{y}SerGln 1243616 : TATTCGCTGTTTGC{GG}gt.........................ag{C}TCTCAA : 1243278 211 : IleLysLysValThrGluMetSerAspAlaValGlyGlyArgIleSerAspGlnIl : 229 :!!!.. ! ! !... !:! ! ::: ... ValSerAspLysTyrSerTyrAsnIle***SerLeuLysLysLysLysLys***Ar 1243277 : GTTAGTGATAAATACAGTTACAATATTtagtcgttaaaaaaaaaaaagaaataacg : 1243221 230 : eTyrGlnCysLysArgCysMetValMetHisGluLysAlaLeuGlnPheTyrGluI : 248 ||| ! ! ! ...|||::: !!!!...! !!:!!!:! gValGlnThrPheLeuArgPheValIlePheIleHisAspPheSerSerPheAspT 1243220 : agTACAAACATTTCTAAGGttcgttatttttatacatgATTTCAGCTCTTTCGATA : 1243164 249 : leLeuLysGluThrSerThrLysAsnTyrPhePheGlnValGlyLeuAsnMetMet : 266 !:!!!!.|||! !!!!!:!! ! !|||!!.|||||||||||||||||||||!!: hrIleAsnGluIleThrSerThrCysTyrLeuPheGlnValGlyLeuAsnMetIle 1243163 : CCATAAACGAAATCACTAGCACATGTTACTTGTTTCAAGTCGGACTTAATATGATC : 1243110 267 : GlyIleSerValGlnAlaValLeu >>>> Target Intron 2 >>>> Leu : 275 |||||||||||| !:!!|||||| 77 bp ! GlyIleSerValThrSerValLeu++ ++Ala 1243109 : GGTATTAGCGTGACGTCTGTTCTAgt.........................agGCC : 1243006 276 : ValSerSerLeuAspLysProAspGlnAlaMetLysAlaGlyValLeuLeuIleSe : 294 !!! !!:!||||||::!|||!!::!! ! !:! !!.! !!!!||||||:! PheIleAsnLeuAspArgProGluGluPheAlaArgIleAlaCysPheLeuIleAl 1243005 : TTTATAAATCTAGATCGGCCTGAAGAATTTGCCAGAATTGCTTGTTTCCTTATAGC : 1242949 295 : rLysGlnPheHisLeuPheValValSerLeuProGlyGlnValLeuLeuAspHisC : 313 !:!!|||.!!||||||!!.|||:!!|||:!!|||||||||:!!:!! !|||!!. aGlnGlnLeuHisLeuLeuValIleSerValProGlyGlnIleIleThrAspGlnS 1242948 : TCAGCAACTCCACTTGTTAGTCATTAGTGTACCAGGGCAGATCATCACGGATCAAA : 1242892 314 : ysAlaGlnLeuAlaLysAsn{Il} >>>> Target Intron 3 >>>> {e} : 320 !!:!!:!!|||.!!! :!!{||} 72 bp {|} erSerLysLeuThrIleAsp{Il}++ ++{e} 1242891 : GTTCAAAGTTGACCATTGAC{AT}gt.........................ag{A} : 1242797 321 : TyrCysSerLysTrpTyrArgThrProLeuGlnIleGlnLysMetIleLysIleMe : 339 ||| !|||! !||||||!:!||||||:!! !|||||||||!!::!! ! |||:! TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIleVa 1242796 : TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATATAGT : 1242742 340 : tGlnIleLysAlaAsnArgProCysAlaLeuThrAlaGlyGlyLeuTyrGluMetS : 358 :||||||!:!:!!..!!:!|||||| !|||..!|||||||||||||||||||||! lGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluMetA 1242741 : ACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAATGA : 1242685 359 : erIleGluAsnPheGlySer >>>> Target Intron 4 >>>> ThrLeuL : 367 :!|||||||||||||||||| 92 bp |||!!!| snIleGluAsnPheGlySer++ ++ThrPheL 1242684 : ACATTGAGAATTTTGGATCAgt.........................agacTTTCA : 1242566 368 : ysSerCysMetSerTyrValThrMetLeuLeuSerLeuLysGlu : 381 ||!!!|||!!:|||||| !!|||||||||||||||!!!|||!!: ysThrCysIleSerTyrPheThrMetLeuLeuSerPheLysAsp 1242565 : AAACCTGCATATCGTACTTTACGATGCTCTTATCATTCAAAGAC : 1242522 vulgar: gi|805754615|ref|XP_012138734.1| 109 381 . KQ414851.1 1243893 1242521 - 505 M 51 153 G 1 0 M 46 138 S 0 2 5 0 2 I 0 314 3 0 2 S 1 1 M 66 198 5 0 2 I 0 73 3 0 2 M 45 135 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 44 132 5 0 2 I 0 88 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242522 1243893 505 - . gene_id 1 ; sequence gi|805754615|ref|XP_012138734.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1243601 1243893 . - . KQ414851.1 exonerate:protein2genome:local exon 1243601 1243893 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local splice5 1243599 1243600 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243283 1243600 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1243283 1243284 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1243084 1243282 . - . KQ414851.1 exonerate:protein2genome:local exon 1243084 1243282 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1243082 1243083 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243007 1243083 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1243007 1243008 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242870 1243006 . - . KQ414851.1 exonerate:protein2genome:local exon 1242870 1243006 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242868 1242869 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242798 1242869 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1242798 1242799 . - . intron_id 2 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242665 1242797 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242797 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 4 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 4 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 3 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242522 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242522 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242522 1243893 505 - . alignment_id 1 ; Query gi|805754615|ref|XP_012138734.1| ; Align 1243894 110 153 ; Align 1243741 162 138 ; Align 1243282 209 198 ; Align 1243007 275 135 ; Align 1242797 321 132 ; Align 1242573 365 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754615|ref|XP_012138734.1| PREDICTED: odorant receptor 24a-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 383 Query range: 243 -> 381 Target range: 1233762 -> 1233123 244 : GlnPheTyrGluIleLeuLysGluThrSerThrLysAsnTyrPhePheGlnValGl : 262 ::!||||||!!:||||||!!.|||!:!||| !!!.!:!|||!!..!!|||||||| ArgPheTyrAspIleLeuAsnGluSerSerArgAsnSerTyrLeuIleGlnValGl 1233762 : AGGTTTTACGATATTCTAAACGAGAGCAGTCGAAATAGCTACTTGATTCAGGTTGG : 1233708 263 : yLeuAsnMetMetGlyIleSerValGlnAlaValLeu >>>> Target Intro : 275 ||||||||||||||||||||||||| ||||||! ! 80 bp yLeuAsnMetMetGlyIleSerValThrAlaValGln+- 1233707 : ATTGAACATGATGGGCATTAGCGTGACCGCTGTCCAGgc................. : 1233667 276 : n 1 >>>> LeuValSerSerLeuAspLysProAspGlnAlaMetLysAlaGlyV : 290 !||| !!!!||||||!:!|||! :!!|||:!:!:!..!!.!| ++ThrValLeuThrLeuAspArgProAlaGluAlaLeuArgCysAlaV 1233666 : ........agACAGTCCTCACACTGGACAGGCCGGCAGAAGCTCTTAGATGTGCTG : 1233544 291 : alLeuLeuIleSerLysGlnPheHisLeuPheValValSerLeuProGlyGlnVal : 308 ||!!!|||:!!:!!:!!|||||||||||||||:!!:!!|||||||||||||||..! alPheLeuValAlaGluGlnPheHisLeuPheIleIleSerLeuProGlyGlnThr 1233543 : TGTTCCTTGTAGCGGAGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACA : 1233490 309 : LeuLeuAspHisCysAlaGlnLeuAlaLysAsnIleTyr >>>> Target Int : 322 |||:!!|||||||||.!!:!!|||:!!|||:!!!!:||| 70 bp LeuValAspHisCysThrLysLeuSerLysAspMetTyr++ 1233489 : CTCGTGGATCATTGTACGAAACTATCGAAGGATATGTACgt............... : 1233446 323 : ron 2 >>>> CysSerLysTrpTyrArgThrProLeuGlnIleGlnLysMetIl : 336 ! !|||! !||||||!:!..!||| !:!!.!!|||::!:!:|| +-SerSerThrTrpTyrLysValProAlaLysPheGlnArgValIl 1233445 : ..........acTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAAT : 1233336 337 : eLysIleMetGlnIleLysAlaAsnArgProCysAlaLeuThrAlaGlyGlyLeuT : 355 | ! ! |||||||||!:!||| !:!||||||!.!||||||||||||||||||| eTyrThrMetGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuT 1233335 : TTACACGATGCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGT : 1233279 356 : yrGluMetSerIleGluAsnPheGlySer >>>> Target Intron 3 >>>> : 365 ||||||||!:!!!:|||||||||!.!!:! 75 bp yrGluMetAsnMetGluAsnPheAlaAsn++ 1233278 : ATGAAATGAACATGGAGAACTTTGCAAACgt......................... : 1233247 366 : ThrLeuLysSerCysMetSerTyrValThrMetLeuLeuSerLeuLysGlu : 381 |||!!!|||!!!|||||||||||| !!|||||||||:!!||||||!:!||| ++ThrPheLysThrCysMetSerTyrPheThrMetLeuMetSerLeuArgGlu 1233246 : agaCATTCAAAACGTGCATGTCATACTTCACAATGCTGATGTCACTTAGAGAA : 1233124 vulgar: gi|805754615|ref|XP_012138734.1| 243 381 . KQ414851.1 1233762 1233123 - 383 M 31 93 5 0 2 I 0 76 3 0 2 M 47 141 5 0 2 I 0 66 3 0 2 M 43 129 5 0 2 I 0 71 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233124 1233762 383 - . gene_id 2 ; sequence gi|805754615|ref|XP_012138734.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233670 1233762 . - . KQ414851.1 exonerate:protein2genome:local exon 1233670 1233762 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233668 1233669 . - . intron_id 1 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1233590 1233669 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233590 1233591 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233449 1233589 . - . KQ414851.1 exonerate:protein2genome:local exon 1233449 1233589 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233447 1233448 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233379 1233448 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1233379 1233380 . - . intron_id 1 ; splice_site "AC" KQ414851.1 exonerate:protein2genome:local cds 1233250 1233378 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233378 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 2 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233124 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233124 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233124 1233762 383 - . alignment_id 2 ; Query gi|805754615|ref|XP_012138734.1| ; Align 1233763 244 93 ; Align 1233590 275 141 ; Align 1233379 322 129 ; Align 1233175 365 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754615|ref|XP_012138734.1| PREDICTED: odorant receptor 24a-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 295 Query range: 116 -> 208 Target range: 1234335 -> 1234059 117 : IleTyrArgThrCysIleLeuSerSerMetThrIlePheLeuSerValThrLeuLe : 135 .!!!:! ! ! :!!||||||! !|||..!:!!|||||| !||| !!|||:! PhePheSerAspThrLeuLeuSerPheMetValValPheLeuLeuValProLeuVa 1234335 : TTCTTCTCAGATACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGT : 1234281 136 : uProSerValLeuAspValIleLeuProLeuAsnGluThrArgProArgGlnGlnL : 154 ! ! !! !!|||||||||:!!||||||||||||||||||||||||||||||||| lPheProPheLeuAspValValLeuProLeuAsnGluThrArgProArgGlnGlnG 1234280 : TTTTCCATTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAG : 1234224 155 : euPheAsnValGluTyrLeuPhePheAspLysAspGluTyrTyrTyrSerValTyr : 172 !|||!..|||.!.||||||!:!||||||:!!! !!:|||!:!!:!||||||||| lyPheArgValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyr 1234223 : GATTCAGAGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTAC : 1234170 173 : LeuGlnLeuSerTrpSerThrPheValIleValMetValIleGlyPheValAspSe : 191 !!!||||||:!!|||.!!.!! !!|||:!!||||||:!!||| ! !|||||||| PheGlnLeuAlaTrpGlyAlaValValValValMetIleIleIleThrValAspSe 1234169 : TTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTC : 1234113 192 : rLeuTyrIleIleIleIleHisHisSerSerGlyLeuPheAlaValCysGly : 208 |||||||!!:|||||||||||||||:!!||||||:!!||||||||||||||| rLeuTyrMetIleIleIleHisHisAlaSerGlyMetPheAlaValCysGly 1234112 : GTTGTACATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTGTGCGGG : 1234060 vulgar: gi|805754615|ref|XP_012138734.1| 116 208 . KQ414851.1 1234335 1234059 - 295 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234335 295 - . gene_id 3 ; sequence gi|805754615|ref|XP_012138734.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234335 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234335 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234335 295 - . alignment_id 3 ; Query gi|805754615|ref|XP_012138734.1| ; Align 1234336 117 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754615|ref|XP_012138734.1| PREDICTED: odorant receptor 24a-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 276 Query range: 120 -> 208 Target range: 1229488 -> 1229224 121 : CysIleLeuSerSerMetThrIlePheLeuSerValThrLeuLeuProSerValLe : 139 ..!:!!|||! !:!!||| !:!!|||||| !||| !!|||!!! ! !!!.!|| AlaLeuLeuPheAlaMetCysValPheLeuLeuValProLeuPheGlyProAlaLe 1229488 : GCTTTACTCTTCGCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCT : 1229434 140 : uAspValIleLeuProLeuAsnGluThrArgProArgGlnGlnLeuPheAsnValG : 158 ||||:!!:!!||||||! !||||||||||||||||||||||||||||||!..|||. uAspIleValLeuProSerAsnGluThrArgProArgGlnGlnLeuPheArgValA 1229433 : GGACATCGTCCTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTA : 1229377 159 : luTyrLeuPhePheAspLysAspGluTyrTyrTyrSerValTyrLeuGlnLeuSer : 176 !.|||:!!.!!||||||:!!! !!:|||!:!!:!! !||||||:!!||||||! ! snTyrIleIlePheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPhe 1229376 : ACTATATAATTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTT : 1229323 177 : TrpSerThrPheValIleValMetValIleGlyPheValAspSerLeuTyrIleIl : 195 |||!!!|||.!!|||:!!||||||!.!||| ! !|||||||||||||||!!:|| TrpCysThrIleValLeuValMetAlaIleIleThrValAspSerLeuTyrMetIl 1229322 : TGGTGTACAATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGAT : 1229266 196 : eIleIleHisHisSerSerGlyLeuPheAlaValCysGly : 208 |||||||:!!|||:!!||||||:!!||||||:!!|||||| eIleIleTyrHisAlaSerGlyMetPheAlaIleCysGly 1229265 : CATAATTTACCATGCCAGCGGAATGTTCGCTATATGCGGG : 1229225 vulgar: gi|805754615|ref|XP_012138734.1| 120 208 . KQ414851.1 1229488 1229224 - 276 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229488 276 - . gene_id 4 ; sequence gi|805754615|ref|XP_012138734.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229225 1229488 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229488 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229488 276 - . alignment_id 4 ; Query gi|805754615|ref|XP_012138734.1| ; Align 1229489 121 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754615|ref|XP_012138734.1| PREDICTED: odorant receptor 24a-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 255 Query range: 274 -> 364 Target range: 1228755 -> 1228413 275 : LeuValSerSerLeuAspLysProAspGlnAlaMetLysAlaGlyValLeuLeuIl : 293 :!!:!! !:!!||||||!:!|||..!:!!|||!!:!:! !..!|||:!!||| IleMetLeuAlaLeuAspArgProSerGluAlaIleArgTyrSerValValLeuGl 1228755 : ATAATGCTCGCCCTGGATAGACCGAGCGAAGCTATTAGATATTCTGTGGTTCTTGG : 1228701 294 : eSerLysGlnPheHisLeuPheValValSerLeuProGlyGlnValLeuLeuAspH : 312 !.!! !|||||||||||||||:!!:!!|||||||||||||||..!|||:!!|||| yGlyAlaGlnPheHisLeuPheIleIleSerLeuProGlyGlnThrLeuValAspH 1228700 : AGGTGCGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACACTCGTGGATC : 1228644 313 : isCysAlaGlnLeuAlaLysAsn{Il} >>>> Target Intron 1 >>>> : 320 |||||.!!..!|||.!!!!.:!!{||} 72 bp isCysThrMetLeuThrAsnAsp{Il}++ ++ 1228643 : ATTGTACCATGCTAACGAACGAT{AT}gt.........................ag : 1228548 321 : {e}TyrCysSerLysTrpTyrArgThrProLeuGlnIleGlnLysMetIleLysIl : 338 {|}|||! !|||! !||||||!:!..! !! !:!!.!!|||::!:!:||| ! !! {e}TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMe 1228547 : {A}TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACAT : 1228494 339 : eMetGlnIleLysAlaAsnArgProCysAlaLeuThrAlaGlyGlyLeuTyrGluM : 357 :|||||||||!:!||| !:!|||||| !||||||||||||||||||||||||| tMetGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluM 1228493 : GATGCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAA : 1228437 358 : etSerIleGluAsnPheGlySer : 364 ||!:!!!:|||||||||!.!!:! etAsnMetGluAsnPheAlaAsn 1228436 : TGAACATGGAGAACTTTGCAAAC : 1228414 vulgar: gi|805754615|ref|XP_012138734.1| 274 364 . KQ414851.1 1228755 1228413 - 255 M 45 135 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228414 1228755 255 - . gene_id 5 ; sequence gi|805754615|ref|XP_012138734.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1228619 1228755 . - . KQ414851.1 exonerate:protein2genome:local exon 1228619 1228755 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228617 1228618 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1228547 1228618 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1228547 1228548 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228414 1228546 . - . KQ414851.1 exonerate:protein2genome:local exon 1228414 1228546 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228414 1228755 255 - . alignment_id 5 ; Query gi|805754615|ref|XP_012138734.1| ; Align 1228756 275 135 ; Align 1228546 321 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754615|ref|XP_012138734.1| PREDICTED: odorant receptor 24a-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 243 Query range: 275 -> 381 Target range: 1222711 -> 1222002 276 : ValSerSerLeuAspLysProAspGlnAlaMetLysAlaGlyValLeuLeuIleSe : 294 :!!! !!:!:!!|||::!||||||:!! !!!:!:! !!.!:!!!!!:!!:!!:: IleMetAsnIleAspArgProAspGluLeuIleArgLeuAlaMetPheValValAl 1222711 : ATTATGAACATCGACCGACCTGACGAACTCATCAGGCTTGCGATGTTTGTCGTAGc : 1222657 295 : rLysGlnPheHisLeuPheValValSerLeuProGlyGlnValLeuLeuAspHisC : 313 :::::::|||||||||...:!!:!!|||||||||||||||:!!|||||||||||| aGlnLysPheHisLeuLeuIleLeuSerLeuProGlyGlnMetLeuLeuAspHisS 1222656 : tcagaaatttcatttgctcATCCTTAGTTTACCTGGGCAAATGTTGTTAGATCATA : 1222600 314 : ysAla{G} >>>> Target Intron 1 >>>> {ln}LeuAlaLysAsnIle : 320 !! !{:} 71 bp {!!}:!!..! :!!! ! erLeu{G}+- +-{lu}IleCysCysAspSer 1222599 : GTTTA{G}ga.........................at{AG}ATTTGTTGCGACAGT : 1222508 321 : TyrCysSerLysTrpTyrArgThrProLeuGlnIleGlnLysMetIleLysIleMe : 339 |||..!||||||||||||..! !|||:!!:!! ||||||:!!||| ! ! || TyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTyrThrMe 1222507 : TACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTACACGAT : 1222451 340 : tGlnIleLysAlaAsnArgProCysAlaLeuThrAlaGlyGlyLeuTyrGluMetS : 358 ||||!!:!:!:!!! ||||||||| !|||||||||||||||:!!:!!||||||! tGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisGluMetA 1222450 : GCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATGAGATGA : 1222394 359 : erIleGluAsnPheGlySer >>>> Target Intron 2 >>>> ThrLeuL : 367 :!||||||!:!||||||! ! 320 bp .!!:!!| snIleGluSerPheGlyIle++ ++AlaIleL 1222393 : ACATCGAGAGTTTCGGAATAgt.........................aggCTATTA : 1222047 368 : ysSerCysMetSerTyrValThrMetLeuLeuSerLeuLysGlu : 381 ||:!!|||||||||||| !!! !|||!!!||||||||||||||| ysAlaCysMetSerTyrPheMetMetPheLeuSerLeuLysGlu 1222046 : AAGCGTGCATGTCCTATTTCATGATGTTCCTGTCGTTGAAAGAA : 1222003 vulgar: gi|805754615|ref|XP_012138734.1| 275 381 . KQ414851.1 1222711 1222002 - 243 M 39 117 S 0 1 5 0 2 I 0 67 3 0 2 S 1 2 M 49 147 5 0 2 I 0 316 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222003 1222711 243 - . gene_id 6 ; sequence gi|805754615|ref|XP_012138734.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1222594 1222711 . - . KQ414851.1 exonerate:protein2genome:local exon 1222594 1222711 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1222592 1222593 . - . intron_id 1 ; splice_site "GA" KQ414851.1 exonerate:protein2genome:local intron 1222523 1222593 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1222523 1222524 . - . intron_id 0 ; splice_site "AT" KQ414851.1 exonerate:protein2genome:local cds 1222374 1222522 . - . KQ414851.1 exonerate:protein2genome:local exon 1222374 1222522 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1222372 1222373 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222054 1222373 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1222054 1222055 . - . intron_id 1 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1222003 1222053 . - . KQ414851.1 exonerate:protein2genome:local exon 1222003 1222053 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222003 1222711 243 - . alignment_id 6 ; Query gi|805754615|ref|XP_012138734.1| ; Align 1222712 276 117 ; Align 1222521 316 147 ; Align 1222054 365 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754615|ref|XP_012138734.1| PREDICTED: odorant receptor 24a-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 215 Query range: 121 -> 208 Target range: 1240082 -> 1239821 122 : IleLeuSerSerMetThrIlePheLeuSerValThrLeuLeuProSerValLeuAs : 140 :!!!!!||| ::: ||||||||| !||| :::...||| :::||||| LeuPheSerValLeuPheIlePheLeuValValProIlePheProProLeuLeuAs 1240082 : TTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcctcctcttctggA : 1240028 141 : pValIleLeuProLeuAsnGluThrArgProArgGlnGlnLeuPheAsnValGluT : 159 |:!!:!! !|||||||||||||||||| !!||||||::::::|||...|||...| pIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIlePheLysValAsnT 1240027 : CATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatattcaaagttaaTT : 1239971 160 : yrLeuPhePheAspLysAspGluTyrTyrTyrSerValTyrLeuGlnLeuSerTrp : 177 |||||.!!.!!|||!:!|||||| ! ! ! !..!|||!!!!!.||||||||| yrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPheHisLeuSerTrp 1239970 : ACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTTCACTTGTCTTGG : 1239917 178 : SerThrPheValIleValMetValIleGlyPheValAspSerLeuTyrIleIleIl : 196 !!!|||.!!..!:!!! !!!: !:!: ! ! !!!:! !:!!|||:!!:!!:! ThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIleTyrValLeuLe 1239916 : ACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGTCCTTCT : 1239860 197 : eIleHisHisSerSerGlyLeuPheAlaValCysGly : 208 !|||||||||!!!||||||||||||||||||..!||| uIleHisHisThrSerGlyLeuPheAlaValAlaGly 1239859 : TATTCATCATACCAGCGGTCTGTTTGCTGTGGCTGgg : 1239822 vulgar: gi|805754615|ref|XP_012138734.1| 121 208 . KQ414851.1 1240082 1239821 - 215 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240082 215 - . gene_id 7 ; sequence gi|805754615|ref|XP_012138734.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239822 1240082 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240082 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240082 215 - . alignment_id 7 ; Query gi|805754615|ref|XP_012138734.1| ; Align 1240083 122 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754615|ref|XP_012138734.1| PREDICTED: odorant receptor 24a-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 201 Query range: 116 -> 208 Target range: 1224300 -> 1224024 117 : IleTyrArgThrCysIleLeuSerSerMetThrIlePheLeuSerValThrLeuLe : 135 |||::: :!:! !! ! !:!! !:!!!:!:!!||| !! !!|||:! IlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLeuIl 1224300 : attttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGAT : 1224246 136 : uProSerValLeuAspValIleLeuProLeuAsnGluThrArgProArgGlnGlnL : 154 ! ! !!||||||||||||:!! !||||||||||||||||||||||||::!! | eAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLeuL 1224245 : AAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTT : 1224189 155 : euPheAsnValGluTyrLeuPhePheAspLysAspGluTyrTyrTyrSerValTyr : 172 ||.!! |||...|||:!!|||.!.|||:!! !!|||:!!!:!||||||||| !! euLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValAsn 1224188 : TGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAAT : 1224135 173 : LeuGlnLeuSerTrpSerThrPheValIleValMetValIleGlyPheValAspSe : 191 !!!!!.|||! ! |||..!.!! ! !! !|||:!!||| ! !||||||! PheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAspMe 1224134 : TTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATAT : 1224078 192 : rLeuTyrIleIleIleIleHisHisSerSerGlyLeuPheAlaValCysGly : 208 !|||||||||! !|||||| !||| !!!!||||||||||||||||||||| tLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaValCysGly 1224077 : GTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: gi|805754615|ref|XP_012138734.1| 116 208 . KQ414851.1 1224300 1224024 - 201 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224300 201 - . gene_id 8 ; sequence gi|805754615|ref|XP_012138734.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224300 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224300 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224300 201 - . alignment_id 8 ; Query gi|805754615|ref|XP_012138734.1| ; Align 1224301 117 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754615|ref|XP_012138734.1| PREDICTED: odorant receptor 24a-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 275 -> 320 Target range: 1238819 -> 1238684 276 : ValSerSerLeuAspLysProAspGlnAlaMetLysAlaGlyValLeuLeuIleSe : 294 |||.!!!:!:!!||| ! ||| !|||:!!!:! !!.!..!:!!! ! :! ValGlyAsnIleAspAspProThrValAlaLeuArgAsnAlaThrValTrpGlyAl 1238819 : GTGGGGAATATAGACGATCCGACAGTAGCTTTGAGAAACGCTACGGTCTGGGGGGC : 1238765 295 : rLysGlnPheHisLeuPheValValSerLeuProGlyGlnValLeuLeuAspHisC : 313 !||||||.!!|||||||||:!!:!!|||:!!|||||||||||||||:!!||||||| aLysGlnIleHisLeuPheIleIleSerIleProGlyGlnValLeuIleAspHisC 1238764 : TAAGCAAATTCACCTGTTCATCATCAGTATACCTGGACAGGTGCTTATAGATCATT : 1238708 314 : ysAlaGlnLeuAlaLysAsnIle : 320 ||!.!:!!|||:!!!!.:!!!!: ysValGluLeuSerAsnAspMet 1238707 : GTGTGGAGCTGTCAAACGACATG : 1238685 vulgar: gi|805754615|ref|XP_012138734.1| 275 320 . KQ414851.1 1238819 1238684 - 118 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1238685 1238819 118 - . gene_id 9 ; sequence gi|805754615|ref|XP_012138734.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1238685 1238819 . - . KQ414851.1 exonerate:protein2genome:local exon 1238685 1238819 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1238685 1238819 118 - . alignment_id 9 ; Query gi|805754615|ref|XP_012138734.1| ; Align 1238820 276 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752323|ref|XP_012144879.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 185 Query range: 88 -> 149 Target range: 1233381 -> 1233123 89 : TyrGlySerAsnTrpCysGluValProIleLysPheGlnLysSerLeuCysPheMe : 107 |||..!|||!..|||! !:!!|||||| !|||||||||::! !:!!! ! || TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMe 1233381 : TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGAT : 1233327 108 : tIleAlaArgSerSerLysProCysIleLeuSerAlaGlyGlyLeuTyrAspMetA : 126 | ! !|||:!! !|||||||||:!!|||!!!|||||||||||||||!!:|||| tGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetA 1233326 : GCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGA : 1233270 127 : snMetGluAsnTyrGlyLys >>>> Target Intron 1 >>>> AlaValL : 135 |||||||||||!:!!.!!!. 75 bp .!! !!| snMetGluAsnPheAlaAsn++ ++ThrPheL 1233269 : ACATGGAGAACTTTGCAAACgt.........................agaCATTCA : 1233168 136 : ysAlaCysMetSerTyrPheThrMetPheLeuSerMetArgGlu : 149 ||.!!|||||||||||||||||||||.!.:!!|||:!:|||||| ysThrCysMetSerTyrPheThrMetLeuMetSerLeuArgGlu 1233167 : AAACGTGCATGTCATACTTCACAATGCTGATGTCACTTAGAGAA : 1233124 vulgar: gi|805752323|ref|XP_012144879.1| 88 149 . KQ414851.1 1233381 1233123 - 185 M 44 132 5 0 2 I 0 71 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233124 1233381 185 - . gene_id 1 ; sequence gi|805752323|ref|XP_012144879.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233250 1233381 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233381 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233124 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233124 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233124 1233381 185 - . alignment_id 1 ; Query gi|805752323|ref|XP_012144879.1| ; Align 1233382 89 132 ; Align 1233175 133 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752323|ref|XP_012144879.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 184 Query range: 88 -> 149 Target range: 1222505 -> 1222002 89 : TyrGlySerAsnTrpCysGluValProIleLysPheGlnLysSerLeuCysPheMe : 107 |||!.!|||!!.|||! !|||:!!|||:!!||| ||||||! !:!!! ! || TyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTyrThrMe 1222505 : TACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTACACGAT : 1222451 108 : tIleAlaArgSerSerLysProCysIleLeuSerAlaGlyGlyLeuTyrAspMetA : 126 | ! !||||||! !::!||||||||||||!!!|||||||||:!!:!!!!:|||| tGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisGluMetA 1222450 : GCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATGAGATGA : 1222394 127 : snMetGluAsnTyrGlyLys >>>> Target Intron 1 >>>> AlaValL : 135 ||!!:|||!:!!:!|||! ! 320 bp |||:!!| snIleGluSerPheGlyIle++ ++AlaIleL 1222393 : ACATCGAGAGTTTCGGAATAgt.........................aggCTATTA : 1222047 136 : ysAlaCysMetSerTyrPheThrMetPheLeuSerMetArgGlu : 149 ||||||||||||||||||||! !||||||||||||:!!!:!||| ysAlaCysMetSerTyrPheMetMetPheLeuSerLeuLysGlu 1222046 : AAGCGTGCATGTCCTATTTCATGATGTTCCTGTCGTTGAAAGAA : 1222003 vulgar: gi|805752323|ref|XP_012144879.1| 88 149 . KQ414851.1 1222505 1222002 - 184 M 44 132 5 0 2 I 0 316 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222003 1222505 184 - . gene_id 2 ; sequence gi|805752323|ref|XP_012144879.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1222374 1222505 . - . KQ414851.1 exonerate:protein2genome:local exon 1222374 1222505 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1222372 1222373 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222054 1222373 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1222054 1222055 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1222003 1222053 . - . KQ414851.1 exonerate:protein2genome:local exon 1222003 1222053 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222003 1222505 184 - . alignment_id 2 ; Query gi|805752323|ref|XP_012144879.1| ; Align 1222506 89 132 ; Align 1222054 133 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752323|ref|XP_012144879.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 162 Query range: 88 -> 149 Target range: 1242796 -> 1242521 89 : TyrGlySerAsnTrpCysGluValProIleLysPheGlnLysSerLeuCysPheMe : 107 |||..!|||! |||! !:!!..!|||:!: !.!!||||||! !||| !.!.:! TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIleVa 1242796 : TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATATAGT : 1242742 108 : tIleAlaArgSerSerLysProCysIleLeuSerAlaGlyGlyLeuTyrAspMetA : 126 : ! !||||||.!!|||||||||! !||| !|||||||||||||||!!:|||| lGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluMetA 1242741 : ACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAATGA : 1242685 127 : snMetGluAsnTyrGlyLys >>>> Target Intron 1 >>>> AlaValL : 135 ||!!:||||||!:!|||..! 92 bp ..! !!| snIleGluAsnPheGlySer++ ++ThrPheL 1242684 : ACATTGAGAATTTTGGATCAgt.........................agacTTTCA : 1242566 136 : ysAlaCysMetSerTyrPheThrMetPheLeuSerMetArgGlu : 149 ||.!!|||!!:|||||||||||||||.!!||||||.!.!:!!!: ysThrCysIleSerTyrPheThrMetLeuLeuSerPheLysAsp 1242565 : AAACCTGCATATCGTACTTTACGATGCTCTTATCATTCAAAGAC : 1242522 vulgar: gi|805752323|ref|XP_012144879.1| 88 149 . KQ414851.1 1242796 1242521 - 162 M 44 132 5 0 2 I 0 88 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242522 1242796 162 - . gene_id 3 ; sequence gi|805752323|ref|XP_012144879.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1242665 1242796 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242796 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242522 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242522 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242522 1242796 162 - . alignment_id 3 ; Query gi|805752323|ref|XP_012144879.1| ; Align 1242797 89 132 ; Align 1242573 133 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752323|ref|XP_012144879.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 162 Query range: 88 -> 149 Target range: 1228545 -> 1228287 89 : TyrGlySerAsnTrpCysGluValProIleLysPheGlnLysSerLeuCysPheMe : 107 |||..!|||!..|||! !:!!||| !! !|||||||||::! !:!!! !.!.|| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 108 : tIleAlaArgSerSerLysProCysIleLeuSerAlaGlyGlyLeuTyrAspMetA : 126 | ! !|||:!! !|||||||||||||||!!!|||||||||||||||!!:|||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 127 : snMetGluAsnTyrGlyLysAla{V} >>>> Target Intron 1 >>>> { : 134 |||||||||||!:!!.!!!.!.!{:} 75 bp { snMetGluAsnPheAlaAsnVal{L}++ +-{ 1228433 : ACATGGAGAACTTTGCAAACGTT{C}gt.........................at{ : 1228334 135 : al}LysAlaCysMetSerTyrPheThrMetPheLeuSerMetArgGlu : 149 !!}|||.!!|||||||||||||||||||||.!.:!!|||.!.|||||| eu}LysThrCysMetSerTyrPheThrMetLeuMetSerPheArgGlu 1228333 : TC}AAAACGTGCATGTCGTACTTCACAATGCTGATGTCATTTAGGGAA : 1228288 vulgar: gi|805752323|ref|XP_012144879.1| 88 149 . KQ414851.1 1228545 1228287 - 162 M 45 135 S 0 1 5 0 2 I 0 71 3 0 2 S 1 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228288 1228545 162 - . gene_id 4 ; sequence gi|805752323|ref|XP_012144879.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1228410 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228410 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228408 1228409 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1228335 1228409 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1228335 1228336 . - . intron_id 0 ; splice_site "AT" KQ414851.1 exonerate:protein2genome:local cds 1228288 1228334 . - . KQ414851.1 exonerate:protein2genome:local exon 1228288 1228334 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228288 1228545 162 - . alignment_id 4 ; Query gi|805752323|ref|XP_012144879.1| ; Align 1228546 89 135 ; Align 1228333 135 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754586|ref|XP_012138654.1| PREDICTED: odorant receptor 49a-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 389 Query range: 247 -> 399 Target range: 1233804 -> 1233123 248 : ArgLeuLeuLysArgCysLeuAsnThrHisTyrGluAlaIleLysPheTyrGluTy : 266 ||||||||||||! ! ! ! ! !! ! ! ! !!:!||||||!!: ArgLeuLeuLysProThrAsnLeuCysPheCysTyrIleSerArgPheTyrAspIl 1233804 : CGATTATTGAAACCGACTAACTTGTGCTTTTGTTACATTTCCAGGTTTTACGATAT : 1233750 267 : rMetAspAspSerThrArgLeuSerTyrLeuPheGlnValGlyLeuAsnMetLeuG : 285 !:!::!!!!:|||!:!||| !|||||||||.!!||||||||||||||||||:!!| eLeuAsnGluSerSerArgAsnSerTyrLeuIleGlnValGlyLeuAsnMetMetG 1233749 : TCTAAACGAGAGCAGTCGAAATAGCTACTTGATTCAGGTTGGATTGAACATGATGG : 1233693 286 : lyIleThrSerThrAlaValGln >>>> Target Intron 1 >>>> AlaV : 294 |||||!:! !|||||||||||| 80 bp .!!| lyIleSerValThrAlaValGln+- ++ThrV 1233692 : GCATTAGCGTGACCGCTGTCCAGgc.........................agACAG : 1233586 295 : alMetAsnPheAspArgProGlnGluAlaPheArgIleAlaMetPheLeuPheGly : 312 ||:!:!...!.||||||||| !||||||.!!||| !|||:!!|||||| ! !.! alLeuThrLeuAspArgProAlaGluAlaLeuArgCysAlaValPheLeuValAla 1233585 : TCCTCACACTGGACAGGCCGGCAGAAGCTCTTAGATGTGCTGTGTTCCTTGTAGCG : 1233532 313 : GlnGlnPheHisLeuTyrThrLeuSerLeuProGlyGlnValLeuLeuAspArgSe : 331 :!!||||||||||||!:!! !:!!|||||||||||||||..!|||:!!|||!.!!! GluGlnPheHisLeuPheIleIleSerLeuProGlyGlnThrLeuValAspHisCy 1233531 : GAGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACACTCGTGGATCATTG : 1233475 332 : rSerGluLeuSerAspAsn{Il} >>>> Target Intron 2 >>>> {e}T : 339 !!!!:!!|||||| ! :!!{||} 70 bp {|}| sThrLysLeuSerLysAsp{Il}++ ++{e}T 1233474 : TACGAAACTATCGAAGGAT{AT}gt.........................ag{A}T : 1233381 340 : yrCysSerLysTrpHisGluIleProValLysTyrGlnValIleLeuHisIleMet : 357 ||! !|||! !|||:!!:!!:!!|||!.!|||!:!||| !:!!:!!:!!! ||| yrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMet 1233380 : ACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGATG : 1233327 358 : LeuThrArgSerIleArgProCysLysLeuThrAlaGlyGlyLeuTyrAspMetAs : 376 ! !! !|||:!!:!!!:!|||||| |||||||||||||||||||||!!:||||| GlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetAs 1233326 : CAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGAA : 1233270 377 : nIleGluSerPheGlyThr >>>> Target Intron 3 >>>> MetPheLy : 385 |!!:|||!:!|||!.!!.! 75 bp ||||| nMetGluAsnPheAlaAsn++ ++ThrPheLy 1233269 : CATGGAGAACTTTGCAAACgt.........................agaCATTCAA : 1233168 386 : sSerCysMetSerTyrCysThrIleLeuLeuSerLeuArgGlu : 399 |!!!||||||||||||! !|||!!:|||:!!|||||||||||| sThrCysMetSerTyrPheThrMetLeuMetSerLeuArgGlu 1233167 : AACGTGCATGTCATACTTCACAATGCTGATGTCACTTAGAGAA : 1233124 vulgar: gi|805754586|ref|XP_012138654.1| 247 399 . KQ414851.1 1233804 1233123 - 389 M 45 135 5 0 2 I 0 76 3 0 2 M 45 135 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 44 132 5 0 2 I 0 71 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233124 1233804 389 - . gene_id 1 ; sequence gi|805754586|ref|XP_012138654.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233670 1233804 . - . KQ414851.1 exonerate:protein2genome:local exon 1233670 1233804 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233668 1233669 . - . intron_id 1 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1233590 1233669 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233590 1233591 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233453 1233589 . - . KQ414851.1 exonerate:protein2genome:local exon 1233453 1233589 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233451 1233452 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233383 1233452 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1233383 1233384 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233250 1233382 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233382 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 2 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233124 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233124 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233124 1233804 389 - . alignment_id 1 ; Query gi|805754586|ref|XP_012138654.1| ; Align 1233805 248 135 ; Align 1233590 293 135 ; Align 1233382 339 132 ; Align 1233175 383 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754586|ref|XP_012138654.1| PREDICTED: odorant receptor 49a-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 314 Query range: 281 -> 399 Target range: 1222747 -> 1222002 282 : AsnMetLeuGlyIleThrSerThrAlaValGlnAlaValMetAsnPheAspArgPr : 300 !.....:!! !!|||.!!..! ! ! !!|||..!:!!||||||.!!|||||||| ArgGlnIleArgIleAlaAspPheIlePheGlnCysIleMetAsnIleAspArgPr 1222747 : AGACAAATACGCATCGCCGATTTTATTTTCCAGTGCATTATGAACATCGACCGACC : 1222693 301 : oGlnGluAlaPheArgIleAlaMetPheLeuPheGlyGlnGlnPheHisLeuTyrT : 319 |.!.||| !.!!|||:!!|||||||||:!! ! !..|||:::||||||||| ! oAspGluLeuIleArgLeuAlaMetPheValValAlaGlnLysPheHisLeuLeuI 1222692 : TGACGAACTCATCAGGCTTGCGATGTTTGTCGTAGctcagaaatttcatttgctcA : 1222636 320 : hrLeuSerLeuProGlyGlnValLeuLeuAspArgSerSerGluLeuSerAspAsn : 337 !||||||||||||||||||:!!|||||||||!.!|||! !! !|||:!!|||! leLeuSerLeuProGlyGlnMetLeuLeuAspHisSerLeuGlyLeuAlaAspIle 1222635 : TCCTTAGTTTACCTGGGCAAATGTTGTTAGATCATAGTTTAGGATTGGCCGATATA : 1222582 338 : {Il} >>>> Target Intron 1 >>>> {e}TyrCysSerLysTrpHisGl : 345 {||} 71 bp {|}|||..!|||||||||:!!|| {Il}++ ++{e}TyrAlaSerLysTrpTyrGl 1222581 : {AT}gt.........................ag{T}TACGCTTCTAAATGGTACGA : 1222487 346 : uIleProValLysTyrGlnValIleLeuHisIleMetLeuThrArgSerIleArgP : 364 |:!!||||||||| ||| !:!::!!:!!! |||! !! !||||||||||||| uLeuProValLysGlyGlnLysLeuIleTyrThrMetGlnMetArgSerIleArgP 1222486 : ACTACCGGTAAAAGGGCAAAAGTTGATTTACACGATGCAAATGAGGTCCATACGGC : 1222430 365 : roCysLysLeuThrAlaGlyGlyLeuTyrAspMetAsnIleGluSerPheGlyThr : 382 |||||! !|||||||||||||||:!!:!!!!:|||||||||||||||||||||! ! roCysIleLeuThrAlaGlyGlyValHisGluMetAsnIleGluSerPheGlyIle 1222429 : CATGTATATTAACAGCAGGAGGAGTGCATGAGATGAACATCGAGAGTTTCGGAATA : 1222376 383 : >>>> Target Intron 2 >>>> MetPheLysSerCysMetSerTyrCys : 391 320 bp .!!|||:!!||||||||||||! ! ++ ++AlaIleLysAlaCysMetSerTyrPhe 1222375 : gt.........................aggCTATTAAAGCGTGCATGTCCTATTTC : 1222029 392 : ThrIleLeuLeuSerLeuArgGlu : 399 ! !!!:!!!|||||||||!:!||| MetMetPheLeuSerLeuLysGlu 1222028 : ATGATGTTCCTGTCGTTGAAAGAA : 1222003 vulgar: gi|805754586|ref|XP_012138654.1| 281 399 . KQ414851.1 1222747 1222002 - 314 M 56 168 S 0 2 5 0 2 I 0 67 3 0 2 S 1 1 M 44 132 5 0 2 I 0 316 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222003 1222747 314 - . gene_id 2 ; sequence gi|805754586|ref|XP_012138654.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1222578 1222747 . - . KQ414851.1 exonerate:protein2genome:local exon 1222578 1222747 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1222576 1222577 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222507 1222577 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1222507 1222508 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222374 1222506 . - . KQ414851.1 exonerate:protein2genome:local exon 1222374 1222506 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1222372 1222373 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222054 1222373 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1222054 1222055 . - . intron_id 1 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1222003 1222053 . - . KQ414851.1 exonerate:protein2genome:local exon 1222003 1222053 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222003 1222747 314 - . alignment_id 2 ; Query gi|805754586|ref|XP_012138654.1| ; Align 1222748 282 168 ; Align 1222506 339 132 ; Align 1222054 383 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754586|ref|XP_012138654.1| PREDICTED: odorant receptor 49a-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 308 Query range: 263 -> 383 Target range: 1243170 -> 1242661 264 : TyrGluTyrMetAspAspSerThrArgLeuSerTyrLeuPheGlnValGlyLeuAs : 282 !:!!!: !!!::!!!!:! !|||!!! !!!!||||||||||||||||||||||| PheAspThrIleAsnGluIleThrSerThrCysTyrLeuPheGlnValGlyLeuAs 1243170 : TTCGATACCATAAACGAAATCACTAGCACATGTTACTTGTTTCAAGTCGGACTTAA : 1243116 283 : nMetLeuGlyIleThrSerThrAlaValGln >>>> Target Intron 1 >> : 293 ||||:!!||||||!:! !|||:!!|||! ! 77 bp nMetIleGlyIleSerValThrSerValLeu++ 1243115 : TATGATCGGTATTAGCGTGACGTCTGTTCTAgt....................... : 1243081 294 : >> AlaValMetAsnPheAspArgProGlnGluAlaPheArgIleAlaMetPheL : 310 ||| !!!!:|||.!.|||||||||:!!||| ! !||||||||| |||| ++AlaPheIleAsnLeuAspArgProGluGluPheAlaArgIleAlaCysPheL 1243080 : ..agGCCTTTATAAATCTAGATCGGCCTGAAGAATTTGCCAGAATTGCTTGTTTCC : 1242955 311 : euPheGlyGlnGlnPheHisLeuTyrThrLeuSerLeuProGlyGlnValLeuLeu : 328 ||.!.!.!||||||.!!||||||! ..!:!!|||:!!|||||||||:!!:!! ! euIleAlaGlnGlnLeuHisLeuLeuValIleSerValProGlyGlnIleIleThr 1242954 : TTATAGCTCAGCAACTCCACTTGTTAGTCATTAGTGTACCAGGGCAGATCATCACG : 1242901 329 : AspArgSerSerGluLeuSerAspAsn{Il} >>>> Target Intron 2 >> : 338 |||!:!||||||:!!|||!!! !:!!{||} 72 bp AspGlnSerSerLysLeuThrIleAsp{Il}++ 1242900 : GATCAAAGTTCAAAGTTGACCATTGAC{AT}gt....................... : 1242867 339 : >> {e}TyrCysSerLysTrpHisGluIleProValLysTyrGlnValIleLeuH : 355 {|}||| !|||! !|||:!!:!!! !|||||| ! !||| !||||||| ++{e}TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuH 1242866 : ..ag{A}TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTC : 1242748 356 : isIleMetLeuThrArgSerIleArgProCysLysLeuThrAlaGlyGlyLeuTyr : 373 |||||:!:! !! !|||||| !!:!||||||||||||..!||||||||||||||| isIleValGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyr 1242747 : ATATAGTACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATAC : 1242694 374 : AspMetAsnIleGluSerPheGlyThrMet : 383 !!:||||||||||||!:!||||||:!!:!: GluMetAsnIleGluAsnPheGlySerVal 1242693 : GAAATGAACATTGAGAATTTTGGATCAGTA : 1242662 vulgar: gi|805754586|ref|XP_012138654.1| 263 383 . KQ414851.1 1243170 1242661 - 308 M 29 87 5 0 2 I 0 73 3 0 2 M 45 135 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242662 1243170 308 - . gene_id 3 ; sequence gi|805754586|ref|XP_012138654.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1243084 1243170 . - . KQ414851.1 exonerate:protein2genome:local exon 1243084 1243170 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1243082 1243083 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243007 1243083 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1243007 1243008 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242870 1243006 . - . KQ414851.1 exonerate:protein2genome:local exon 1242870 1243006 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242868 1242869 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242798 1242869 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1242798 1242799 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242662 1242797 . - . KQ414851.1 exonerate:protein2genome:local exon 1242662 1242797 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242662 1243170 308 - . alignment_id 3 ; Query gi|805754586|ref|XP_012138654.1| ; Align 1243171 264 87 ; Align 1243007 293 135 ; Align 1242797 339 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754586|ref|XP_012138654.1| PREDICTED: odorant receptor 49a-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 265 Query range: 142 -> 263 Target range: 1229476 -> 1229016 143 : ValLeuValIlePheLeuSerIleProLeuSerSerProValLeuAspPheIleLe : 161 !.!:!! !:!!|||||| !:!!||||||! !.!!|||!.!||||||.!!:!!|| AlaMetCysValPheLeuLeuValProLeuPheGlyProAlaLeuAspIleValLe 1229476 : GCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCGTCCT : 1229422 162 : uLysSerAsnGlnThrArgThrLysIleProLeuPheLysLeuAsnTyrLeuIle< : 180 | !||||||:!!|||||| !!::! !! !||||||!:!:!!||||||:!!||| uProSerAsnGluThrArgProArgGlnGlnLeuPheArgValAsnTyrIleIleP 1229421 : TCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAATTT : 1229365 181 : ->AsnThrGluAspHisPheTyrTyrValTyrValHisSerAlaIleCysSerLeu : 197 :!! !! !|||:!!|||!:!|||||||||:!!!!.! ! ! |||!!!:!! heAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPheTrpCysThrIle 1229364 : TCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACAATC : 1229311 198 : AlaValSerLeuValIleIleValMetAspSerLeuTyrMetValIlePheHisTy : 216 !.!:!! !:!!!.!||||||..!:!:|||||||||||||||:!!|||.!!:!!:! ValLeuValMetAlaIleIleThrValAspSerLeuTyrMetIleIleIleTyrHi 1229310 : GTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGATCATAATTTACCA : 1229254 217 : rIleSerGlyValPheAlaLeuCys{Gl} >>>> Target Intron 1 >>>> : 225 ! !||||||:!!||||||:!!|||{||} 88 bp sAlaSerGlyMetPheAlaIleCys{Gl}++ 1229253 : TGCCAGCGGAATGTTCGCTATATGC{GG}gt......................... : 1229223 226 : {y}TyrGlnIleLysArgAlaThrGluIleMetGluThr<-><->AspSerThr : 240 {|}||||||:!:|||!:!|||||||||.!!:!!!!::!! :!!|||!.! ++{y}TyrGlnValLysLysAlaThrGluPheValAspSerIleAspAsnSerAsn 1229222 : ag{C}TACCAAGTGAAAAAAGCAACAGAATTTGTGGACTCAATCGACAACAGTAAC : 1229088 241 : LeuLysTyrGluHisLysTyrArgLeuLeuLysArgCysLeuAsnThrHisTyrGl : 259 :!!... ! .!.|||! !:!!..!! !!!!|||||||||:!!!.!! !||| !!:! IleSerGlnAsnHisThrHisGluGlnPheLysArgCysValThrMetHisAspLy 1229087 : ATTTCTCAAAATCATACACACGAACAGTTCAAACGATGCGTGACTATGCACGATAA : 1229031 260 : uAlaIleLysPhe : 263 !|||||||||||| sAlaIleLysPhe 1229030 : AGCTATCAAGTTT : 1229017 vulgar: gi|805754586|ref|XP_012138654.1| 142 263 . KQ414851.1 1229476 1229016 - 265 M 37 111 G 0 3 M 45 135 S 0 2 5 0 2 I 0 84 3 0 2 S 1 1 M 12 36 G 0 6 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229017 1229476 265 - . gene_id 4 ; sequence gi|805754586|ref|XP_012138654.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1229226 1229476 . - . KQ414851.1 exonerate:protein2genome:local exon 1229226 1229476 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1229224 1229225 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1229138 1229225 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1229138 1229139 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1229017 1229137 . - . KQ414851.1 exonerate:protein2genome:local exon 1229017 1229137 . - . insertions 6 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229017 1229476 265 - . alignment_id 4 ; Query gi|805754586|ref|XP_012138654.1| ; Align 1229477 143 111 ; Align 1229363 180 135 ; Align 1229137 226 36 ; Align 1229095 238 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754586|ref|XP_012138654.1| PREDICTED: odorant receptor 49a-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 183 Query range: 138 -> 225 Target range: 1234323 -> 1234059 139 : SerIleTrpGlyValLeuValIlePheLeuSerIleProLeuSerSerProValLe : 157 !!!:!! !..! !!:!!|||:!!|||||| !:!!|||||| !! !||| !!|| ThrLeuLeuSerPheMetValValPheLeuLeuValProLeuValPheProPheLe 1234323 : ACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTT : 1234269 158 : uAspPheIleLeuLysSerAsnGlnThrArgThrLysIleProLeuPheLysLeuA : 176 |||| !!:!!||| !! !|||:!!|||||| !!::! ! ! !|||!:!:!!| uAspValValLeuProLeuAsnGluThrArgProArgGlnGlnGlyPheArgValA 1234268 : GGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTA : 1234212 177 : snTyrLeuIleAsnThrGlu<->AspHisPheTyrTyrValTyrValHisSerAla : 193 |||||||| ! ! !||| |||:!!|||!:! !|||||| !!!!.! !||| snTyrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyrPheGlnLeuAla 1234211 : ACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCC : 1234158 194 : IleCysSerLeuAlaValSerLeuValIleIleValMetAspSerLeuTyrMetVa : 212 !!:!!:!!!.!||| !:!!:!!||||||..!:!:|||||||||||||||:! TrpGlyAlaValValValValMetIleIleIleThrValAspSerLeuTyrMetIl 1234157 : TGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGAT : 1234101 213 : lIlePheHisTyrIleSerGlyValPheAlaLeuCysGly : 225 !|||.!!|||:!! !||||||:!!||||||:!!|||||| eIleIleHisHisAlaSerGlyMetPheAlaValCysGly 1234100 : AATAATTCACCATGCCAGCGGAATGTTCGCCGTGTGCGGG : 1234060 vulgar: gi|805754586|ref|XP_012138654.1| 138 225 . KQ414851.1 1234323 1234059 - 183 M 44 132 G 0 3 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234323 183 - . gene_id 5 ; sequence gi|805754586|ref|XP_012138654.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234323 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234323 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234323 183 - . alignment_id 5 ; Query gi|805754586|ref|XP_012138654.1| ; Align 1234324 139 132 ; Align 1234189 183 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754586|ref|XP_012138654.1| PREDICTED: odorant receptor 49a-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 173 Query range: 258 -> 338 Target range: 1239471 -> 1238684 259 : GluAlaIleLysPheTyrGluTyrMetAspAspSerThrArgLeuSerTyrLeuPh : 277 .!.|||.!!!:!! !|||.!. !:!!.!. ! |||!:! !|||||||||||||| HisAlaPheArgCysTyrAsnValLeuGlnLysSerSerValLeuSerTyrLeuPh 1239471 : CATGCTTTCAGGTGTTACAATGTTCTGCAGAAAAGCAGTGTGCTCAGTTACTTGTT : 1239417 278 : eGlnValGlyLeuAsnMetLeuGlyIleThrSerThrAlaValGln >>>> Tar : 293 ||||||||||||||||!!::!!|||:!!!:! !:!!||||||||| eGlnValGlyLeuAsnIleValGlyLeuSerValSerAlaValGln++ 1239416 : TCAAGTTGGATTAAACATAGTGGGCCTTAGTGTGTCAGCTGTTCAAgt........ : 1239367 294 : get Intron 1 >>>> AlaValMetAsnPheAspArgProGlnGluAlaPheA : 305 547 bp .!!||| !|||.!.||| !||| !! !|||!!.| ++ThrValGlyAsnIleAspAspProThrValAlaLeuA 1239366 : .................agACAGTGGGGAATATAGACGATCCGACAGTAGCTTTGA : 1238786 306 : rgIleAlaMetPheLeuPheGlyGlnGlnPheHisLeuTyrThrLeuSerLeuPro : 323 ||! !|||! ! !!! ! !.!:!!|||.!!||||||!:!! !:!!|||:!!||| rgAsnAlaThrValTrpGlyAlaLysGlnIleHisLeuPheIleIleSerIlePro 1238785 : GAAACGCTACGGTCTGGGGGGCTAAGCAAATTCACCTGTTCATCATCAGTATACCT : 1238732 324 : GlyGlnValLeuLeuAspArgSerSerGluLeuSerAspAsnIle : 338 ||||||||||||:!!|||!.!!!! !|||||||||:!!:!!!!: GlyGlnValLeuIleAspHisCysValGluLeuSerAsnAspMet 1238731 : GGACAGGTGCTTATAGATCATTGTGTGGAGCTGTCAAACGACATG : 1238685 vulgar: gi|805754586|ref|XP_012138654.1| 258 338 . KQ414851.1 1239471 1238684 - 173 M 34 102 5 0 2 I 0 543 3 0 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1238685 1239471 173 - . gene_id 6 ; sequence gi|805754586|ref|XP_012138654.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1239370 1239471 . - . KQ414851.1 exonerate:protein2genome:local exon 1239370 1239471 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1239368 1239369 . - . intron_id 1 ; splice_site "gt" KQ414851.1 exonerate:protein2genome:local intron 1238823 1239369 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1238823 1238824 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1238685 1238822 . - . KQ414851.1 exonerate:protein2genome:local exon 1238685 1238822 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1238685 1239471 173 - . alignment_id 6 ; Query gi|805754586|ref|XP_012138654.1| ; Align 1239472 259 102 ; Align 1238823 293 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754586|ref|XP_012138654.1| PREDICTED: odorant receptor 49a-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 149 Query range: 137 -> 236 Target range: 1240088 -> 1239788 138 : IleSerIleTrpGlyValLeuValIlePheLeuSerIleProLeuSerSerProVa : 156 :!! !:!!!::...|||||| ||||||||| !:!!|||::: |||:: ValValLeuPheSerValLeuPheIlePheLeuValValProIlePheProProLe 1240088 : GTCGTTTTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcctcctct : 1240034 157 : lLeuAspPheIleLeuLysSerAsnGlnThrArgThrLysIleProLeuPheLysL : 175 :||||||.!!:!! ! ! !|||:!!||||||.!!::: :::||||||: uLeuAspIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIlePheLysV 1240033 : tctggACATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatattcaaag : 1239977 176 : euAsnTyrLeu<->IleAsnThrGluAspHisPheTyrTyrValTyrValHisSer : 192 ::||||||||| |||:!!! !!!:!!:!!. ! !..!||| !!|||! ! alAsnTyrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPheHisLeu 1239976 : ttaaTTACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTTCACTTG : 1239923 193 : AlaIleCysSerLeuAlaValSerLeuValIleIleValMetAspSerLeuTyrMe : 211 :!! !!!:!!.!!:!!.!!:!! !:!::!! ! !!:! !:!!|||:! SerTrpThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIleTyrVa 1239922 : TCTTGGACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGT : 1239866 212 : tValIlePheHisTyrIleSerGlyValPheAlaLeuCysGlyTyrGlnIleLysA : 230 ::!!:!!.!!|||:!!! !||||||:!!||||||:!!..!||| ...|||. lLeuLeuIleHisHisThrSerGlyLeuPheAlaValAlaGly***IlePheLysH 1239865 : CCTTCTTATTCATCATACCAGCGGTCTGTTTGCTGTGGCTGggtaaatattcaaac : 1239809 231 : rgAlaThrGluIleMetGlu : 236 ...!! !...||| ||| isThrCysAsnIleAsnGlu 1239808 : ataCCTGTAacataaacgaa : 1239789 vulgar: gi|805754586|ref|XP_012138654.1| 137 236 . KQ414851.1 1240088 1239788 - 149 M 41 123 G 0 3 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239789 1240088 149 - . gene_id 7 ; sequence gi|805754586|ref|XP_012138654.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239789 1240088 . - . KQ414851.1 exonerate:protein2genome:local exon 1239789 1240088 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239789 1240088 149 - . alignment_id 7 ; Query gi|805754586|ref|XP_012138654.1| ; Align 1240089 138 123 ; Align 1239963 179 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754586|ref|XP_012138654.1| PREDICTED: odorant receptor 49a-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 338 -> 383 Target range: 1228545 -> 1228410 339 : TyrCysSerLysTrpHisGluIleProValLysTyrGlnValIleLeuHisIleMe : 357 |||! !|||! !|||:!!:!!:!! !!!.!|||!:!||| !:!!:!!:!!!!:|| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 358 : tLeuThrArgSerIleArgProCysLysLeuThrAlaGlyGlyLeuTyrAspMetA : 376 |! !! !|||:!!:!!!:!||||||! |||||||||||||||||||||!!:|||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 377 : snIleGluSerPheGlyThrMet : 383 ||!!:|||!:!|||!.!!.!:!: snMetGluAsnPheAlaAsnVal 1228433 : ACATGGAGAACTTTGCAAACGTT : 1228411 vulgar: gi|805754586|ref|XP_012138654.1| 338 383 . KQ414851.1 1228545 1228410 - 131 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1228545 131 - . gene_id 8 ; sequence gi|805754586|ref|XP_012138654.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228411 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1228545 131 - . alignment_id 8 ; Query gi|805754586|ref|XP_012138654.1| ; Align 1228546 339 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754586|ref|XP_012138654.1| PREDICTED: odorant receptor 49a-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 287 -> 339 Target range: 1228770 -> 1228614 288 : SerThrAlaValGlnAlaValMetAsnPheAspArgProGlnGluAlaPheArgIl : 306 !:! !:!! !!||| !:!!:!: !.!.|||||||||...||||||.!!||| AsnLeuSerPheGlnIleMetLeuAlaLeuAspArgProSerGluAlaIleArgTy 1228770 : AACCTTTCTTTCCAGATAATGCTCGCCCTGGATAGACCGAGCGAAGCTATTAGATA : 1228716 307 : eAlaMetPheLeuPheGlyGlnGlnPheHisLeuTyrThrLeuSerLeuProGlyG : 325 !:!!:!! !!||| ||| !||||||||||||!:!! !:!!||||||||||||| rSerValValLeuGlyGlyAlaGlnPheHisLeuPheIleIleSerLeuProGlyG 1228715 : TTCTGTGGTTCTTGGAGGTGCGCAATTTCATTTGTTCATCATTAGCTTACCTGGAC : 1228659 326 : lnValLeuLeuAspArgSerSerGluLeuSerAspAsnIleTyr : 339 ||..!|||:!!|||!.!!!!!!! !|||!!!:!!:!!!!:||| lnThrLeuValAspHisCysThrMetLeuThrAsnAspMetTyr 1228658 : AGACACTCGTGGATCATTGTACCATGCTAACGAACGATATGTAC : 1228615 vulgar: gi|805754586|ref|XP_012138654.1| 287 339 . KQ414851.1 1228770 1228614 - 120 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228615 1228770 120 - . gene_id 9 ; sequence gi|805754586|ref|XP_012138654.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228615 1228770 . - . KQ414851.1 exonerate:protein2genome:local exon 1228615 1228770 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228615 1228770 120 - . alignment_id 9 ; Query gi|805754586|ref|XP_012138654.1| ; Align 1228771 288 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754598|ref|XP_012138695.1| PREDICTED: odorant receptor Or2-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 401 Query range: 189 -> 332 Target range: 1233762 -> 1233123 190 : LysPheTyrGluTyrMetAsnGluSerThrArgThrSerTyrLeuPheGlnValGl : 208 !:!||||||!!: !:!:|||||||||!:!|||!.!|||||||||.!!|||||||| ArgPheTyrAspIleLeuAsnGluSerSerArgAsnSerTyrLeuIleGlnValGl 1233762 : AGGTTTTACGATATTCTAAACGAGAGCAGTCGAAATAGCTACTTGATTCAGGTTGG : 1233708 209 : yLeuAsnMetLeuGlyIleThrSerThrAlaValGln >>>> Target Intro : 221 ||||||||||:!!||||||!:! !|||||||||||| 80 bp yLeuAsnMetMetGlyIleSerValThrAlaValGln+- 1233707 : ATTGAACATGATGGGCATTAGCGTGACCGCTGTCCAGgc................. : 1233667 222 : n 1 >>>> AlaValMetAsnPheAspGlnProGlnGluAlaPheArgIleIleM : 236 .!!|||:!:!...!.|||::!||| !||||||.!!||| ! !: ++ThrValLeuThrLeuAspArgProAlaGluAlaLeuArgCysAlaV 1233666 : ........agACAGTCCTCACACTGGACAGGCCGGCAGAAGCTCTTAGATGTGCTG : 1233544 237 : etPheLeuLeuGlyGlnGlnPheHisLeuTyrThrLeuSerLeuProGlyGlnVal : 254 !!||||||:!!!.!:!!||||||||||||!:!! !:!!|||||||||||||||..! alPheLeuValAlaGluGlnPheHisLeuPheIleIleSerLeuProGlyGlnThr 1233543 : TGTTCCTTGTAGCGGAGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACA : 1233490 255 : LeuLeuAspArgSerSerGluLeuSerGluAsn{Me} >>>> Target Intro : 266 |||:!!|||!.!!!!!!!:!!||||||:!!:!!{!!} 55 bp LeuValAspHisCysThrLysLeuSerLysAsp{Il}++ 1233489 : CTCGTGGATCATTGTACGAAACTATCGAAGGAT{AT}gt................. : 1233450 267 : n 2 >>>> {t}LysAspIlePheArgTyrPheSerLysTrpHisGluValProV : 281 {:} ! !:!!!:!||||||! !|||! !|||:!!:!!||||||! +-{e}AspIleLeuTyrArgTyrSerSerThrTrpTyrLysValProA 1233449 : ........at{C}GATATTCTTTACAGATACTCTTCCACGTGGTATAAAGTACCGG : 1233354 282 : alLysPheGlnLysValLeuHisIleMetLeuValArgAlaSerArgProCysMet : 299 .!|||||||||::!|||:!!:!!! |||! !:!!|||||| !!:!||||||:!: laLysPheGlnArgValIleTyrThrMetGlnIleArgAlaLeuLysProCysVal 1233353 : CAAAATTTCAGCGAGTAATTTACACGATGCAAATAAGGGCTCTAAAGCCGTGTGTT : 1233300 300 : LeuSerAlaGlyGlyIleTyrGluMetAsnMetGluAsnPheGlySer >>>> T : 316 |||!!!|||||||||:!:||||||||||||||||||||||||!.!!:! LeuThrAlaGlyGlyLeuTyrGluMetAsnMetGluAsnPheAlaAsn++ 1233299 : TTGACTGCAGGTGGATTGTATGAAATGAACATGGAGAACTTTGCAAACgt...... : 1233247 317 : arget Intron 3 >>>> IleValLysThrCysValSerTyrPheThrIleLe : 327 75 bp ! !!|||||||||:!!||||||||||||!!:|| ++ThrPheLysThrCysMetSerTyrPheThrMetLe 1233246 : ...................agaCATTCAAAACGTGCATGTCATACTTCACAATGCT : 1233141 328 : uLeuSerLeuArgAsp : 332 |:!!|||||||||!!: uMetSerLeuArgGlu 1233140 : GATGTCACTTAGAGAA : 1233124 vulgar: gi|805754598|ref|XP_012138695.1| 189 332 . KQ414851.1 1233762 1233123 - 401 M 31 93 5 0 2 I 0 76 3 0 2 M 45 135 S 0 2 5 0 2 I 0 51 3 0 2 S 1 1 M 49 147 5 0 2 I 0 71 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233124 1233762 401 - . gene_id 1 ; sequence gi|805754598|ref|XP_012138695.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233670 1233762 . - . KQ414851.1 exonerate:protein2genome:local exon 1233670 1233762 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233668 1233669 . - . intron_id 1 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1233590 1233669 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233590 1233591 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233453 1233589 . - . KQ414851.1 exonerate:protein2genome:local exon 1233453 1233589 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233451 1233452 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233398 1233452 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1233398 1233399 . - . intron_id 1 ; splice_site "AT" KQ414851.1 exonerate:protein2genome:local cds 1233250 1233397 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233397 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 2 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233124 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233124 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233124 1233762 401 - . alignment_id 1 ; Query gi|805754598|ref|XP_012138695.1| ; Align 1233763 190 93 ; Align 1233590 221 135 ; Align 1233397 267 147 ; Align 1233175 316 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754598|ref|XP_012138695.1| PREDICTED: odorant receptor Or2-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 358 Query range: 191 -> 332 Target range: 1243170 -> 1242521 192 : TyrGluTyrMetAsnGluSerThrArgThrSerTyrLeuPheGlnValGlyLeuAs : 210 !:!!!: !!!:||||||! !|||!!!|||!!!||||||||||||||||||||||| PheAspThrIleAsnGluIleThrSerThrCysTyrLeuPheGlnValGlyLeuAs 1243170 : TTCGATACCATAAACGAAATCACTAGCACATGTTACTTGTTTCAAGTCGGACTTAA : 1243116 211 : nMetLeuGlyIleThrSerThrAlaValGln >>>> Target Intron 1 >> : 221 ||||:!!||||||!:! !|||:!!|||! ! 77 bp nMetIleGlyIleSerValThrSerValLeu++ 1243115 : TATGATCGGTATTAGCGTGACGTCTGTTCTAgt....................... : 1243081 222 : >> AlaValMetAsnPheAspGlnProGlnGluAlaPheArgIleIleMetPheL : 238 ||| !!!!:|||.!.|||!:!|||:!!||| ! !|||||| ! |||| ++AlaPheIleAsnLeuAspArgProGluGluPheAlaArgIleAlaCysPheL 1243080 : ..agGCCTTTATAAATCTAGATCGGCCTGAAGAATTTGCCAGAATTGCTTGTTTCC : 1242955 239 : euLeuGlyGlnGlnPheHisLeuTyrThrLeuSerLeuProGlyGlnValLeuLeu : 256 ||:!!!.!||||||.!!||||||! ..!:!!|||:!!|||||||||:!!:!! ! euIleAlaGlnGlnLeuHisLeuLeuValIleSerValProGlyGlnIleIleThr 1242954 : TTATAGCTCAGCAACTCCACTTGTTAGTCATTAGTGTACCAGGGCAGATCATCACG : 1242901 257 : AspArgSerSerGluLeuSerGluAsn{Me} >>>> Target Intron 2 >> : 266 |||!:!||||||:!!|||!!! :!!{!!} 57 bp AspGlnSerSerLysLeuThrIleAsp{Il}++ 1242900 : GATCAAAGTTCAAAGTTGACCATTGAC{AT}gt....................... : 1242867 267 : >> {t}LysAspIlePheArgTyrPheSerLysTrpHisGluValProValLysP : 283 {:}... !|||||| !|||! !|||:!!:!!..!|||||| !. +-{e}AsnPheThrAsnArgTyrAsnSerMetTrpTyrGlnThrProValTrpI 1242866 : ..ac{t}aattttaccAATAGATATAACTCGATGTGGTATCAAACACCGGTGTGGA : 1242763 284 : heGlnLysValLeuHisIleMetLeuValArgAlaSerArgProCysMetLeuSer : 301 !!||||||:!!|||||||||:!:! !:!!|||:!!.!!!:!||||||! ||| ! leGlnLysIleLeuHisIleValGlnIleArgSerGlyLysProCysLysLeuVal 1242762 : TTCAAAAAATACTTCATATAGTACAAATAAGGTCTGGCAAACCGTGCAAATTGGTA : 1242709 302 : AlaGlyGlyIleTyrGluMetAsnMetGluAsnPheGlySer >>>> Target : 316 |||||||||:!!||||||||||||!!:||||||||||||||| 92 AlaGlyGlyLeuTyrGluMetAsnIleGluAsnPheGlySer++ 1242708 : GCAGGAGGATTATACGAAATGAACATTGAGAATTTTGGATCAgt............ : 1242662 317 : Intron 3 >>>> IleValLysThrCysValSerTyrPheThrIleLeuLeuSe : 329 bp ! !!|||||||||:!!||||||||||||!!:|||||||| ++ThrPheLysThrCysIleSerTyrPheThrMetLeuLeuSe 1242661 : .............agacTTTCAAAACCTGCATATCGTACTTTACGATGCTCTTATC : 1242533 330 : rLeuArgAsp : 332 |!!!!:!||| rPheLysAsp 1242532 : ATTCAAAGAC : 1242522 vulgar: gi|805754598|ref|XP_012138695.1| 191 332 . KQ414851.1 1243170 1242521 - 358 M 29 87 5 0 2 I 0 73 3 0 2 M 45 135 S 0 2 5 0 2 I 0 53 3 0 2 S 1 1 M 49 147 5 0 2 I 0 88 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242522 1243170 358 - . gene_id 2 ; sequence gi|805754598|ref|XP_012138695.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1243084 1243170 . - . KQ414851.1 exonerate:protein2genome:local exon 1243084 1243170 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1243082 1243083 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243007 1243083 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1243007 1243008 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242870 1243006 . - . KQ414851.1 exonerate:protein2genome:local exon 1242870 1243006 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242868 1242869 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242813 1242869 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1242813 1242814 . - . intron_id 1 ; splice_site "ac" KQ414851.1 exonerate:protein2genome:local cds 1242665 1242812 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242812 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 2 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242522 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242522 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242522 1243170 358 - . alignment_id 2 ; Query gi|805754598|ref|XP_012138695.1| ; Align 1243171 192 87 ; Align 1243007 221 135 ; Align 1242812 267 147 ; Align 1242573 316 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754598|ref|XP_012138695.1| PREDICTED: odorant receptor Or2-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 263 Query range: 66 -> 191 Target range: 1229488 -> 1229016 67 : SerLeuTrpValPheMetLeuLeuPheLeuSerLeuProLeuSerAlaProIleLe : 85 :!!||| !! |||! !:!!|||||| !:!!||||||! !!.!||| !|| AlaLeuLeuPheAlaMetCysValPheLeuLeuValProLeuPheGlyProAlaLe 1229488 : GCTTTACTCTTCGCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCT : 1229434 86 : uAspPheValSerGlnSerAsnLysThrArgThrLysIleProLeuPheLysLeuA : 104 ||||.!!||| !! !||||||:!!|||||| !!::! !! !||||||!:!:!!| uAspIleValLeuProSerAsnGluThrArgProArgGlnGlnLeuPheArgValA 1229433 : GGACATCGTCCTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTA : 1229377 105 : snTyrIleVal<->AsnThrAspAspTyrPheTyrPheValTyrLeuHisSerVal : 121 ||||||||:!! :!! !! |||||||||!:!!:!||||||:!!!!.! ! !! snTyrIleIlePheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPhe 1229376 : ACTATATAATTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTT : 1229323 122 : CysCysSerLeuThrIleValIleValIleIleAlaMetAspSerLeuTyrMetVa : 140 !! |||!!!:!!..!:!!|||!!:!.!||||||.!!:!:|||||||||||||||:! TrpCysThrIleValLeuValMetAlaIleIleThrValAspSerLeuTyrMetIl 1229322 : TGGTGTACAATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGAT : 1229266 141 : lIlePheHisTyrIleCysGlyValPheAlaLeuCys{Gl} >>>> Target I : 153 !|||.!!:!!:!! ! !!|||:!!||||||:!!|||{||} 88 eIleIleTyrHisAlaSerGlyMetPheAlaIleCys{Gl}++ 1229265 : CATAATTTACCATGCCAGCGGAATGTTCGCTATATGC{GG}gt............. : 1229223 154 : ntron 1 >>>> {y}TyrGlnIleLysLysAlaAlaGluThrMetGluLys<-> : 166 bp {|}||||||:!:|||||||||.!!||| !:!!!!:..! ++{y}TyrGlnValLysLysAlaThrGluPheValAspSerIle 1229222 : ............ag{C}TACCAAGTGAAAAAAGCAACAGAATTTGTGGACTCAATC : 1229100 167 : <->AsnArgThrLeuArgSerGluHisGlnTyrHisLeuPheArgArgCysValAs : 183 |||!!!!.!:!! !..!.!.||| !:!!.!.! !|||!:!|||||||||!. AspAsnSerAsnIleSerGlnAsnHisThrHisGluGlnPheLysArgCysValTh 1229099 : GACAACAGTAACATTTCTCAAAATCATACACACGAACAGTTCAAACGATGCGTGAC : 1229043 184 : nThrHisHisGluAlaIleLysPhe : 191 !! !||| !!:!!|||||||||||| rMetHisAspLysAlaIleLysPhe 1229042 : TATGCACGATAAAGCTATCAAGTTT : 1229017 vulgar: gi|805754598|ref|XP_012138695.1| 66 191 . KQ414851.1 1229488 1229016 - 263 M 41 123 G 0 3 M 45 135 S 0 2 5 0 2 I 0 84 3 0 2 S 1 1 M 12 36 G 0 6 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229017 1229488 263 - . gene_id 3 ; sequence gi|805754598|ref|XP_012138695.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1229226 1229488 . - . KQ414851.1 exonerate:protein2genome:local exon 1229226 1229488 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1229224 1229225 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1229138 1229225 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1229138 1229139 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1229017 1229137 . - . KQ414851.1 exonerate:protein2genome:local exon 1229017 1229137 . - . insertions 6 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229017 1229488 263 - . alignment_id 3 ; Query gi|805754598|ref|XP_012138695.1| ; Align 1229489 67 123 ; Align 1229363 108 135 ; Align 1229137 154 36 ; Align 1229095 166 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754598|ref|XP_012138695.1| PREDICTED: odorant receptor Or2-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 249 Query range: 215 -> 332 Target range: 1228770 -> 1228287 216 : SerThrAlaValGlnAlaValMetAsnPheAspGlnProGlnGluAlaPheArgIl : 234 !:! !:!! !!||| !:!!:!: !.!.|||::!|||...||||||.!!||| AsnLeuSerPheGlnIleMetLeuAlaLeuAspArgProSerGluAlaIleArgTy 1228770 : AACCTTTCTTTCCAGATAATGCTCGCCCTGGATAGACCGAGCGAAGCTATTAGATA : 1228716 235 : eIleMetPheLeuLeuGlyGlnGlnPheHisLeuTyrThrLeuSerLeuProGlyG : 253 ! !:!! !!||| !||| !||||||||||||!:!! !:!!||||||||||||| rSerValValLeuGlyGlyAlaGlnPheHisLeuPheIleIleSerLeuProGlyG 1228715 : TTCTGTGGTTCTTGGAGGTGCGCAATTTCATTTGTTCATCATTAGCTTACCTGGAC : 1228659 254 : lnValLeuLeuAspArgSerSerGluLeuSerGluAsnMetLysAspIlePheArg : 271 ||..!|||:!!|||!.!!!!!!! !|||!!!.!.:!!||| ! ! ! ! ||| lnThrLeuValAspHisCysThrMetLeuThrAsnAspMetTyrVal******Arg 1228658 : AGACACTCGTGGATCATTGTACCATGCTAACGAACGATATGTACGTTTAGTAACGC : 1228605 272 : TyrPheSerLysTrp >>>> Target Intron 1 >>>> HisGluValPro : 280 ! ! |||:!! 57 bp :!!:!!||| !! Lys***SerGlnGln++ -+TyrLysValSer 1228604 : AAATAATCTCAACAAgt.........................ggTATAAGGTATCG : 1228521 281 : ValLysPheGlnLysValLeuHisIleMetLeuValArgAlaSerArgProCysMe : 299 !.!|||||||||::!|||:!!:!!!!:|||! !:!!|||||| !!:!||||||!! AlaLysPheGlnArgValIleTyrMetMetGlnIleArgAlaLeuLysProCysIl 1228520 : GCAAAATTTCAACGAGTAATTTACATGATGCAAATAAGGGCTCTAAAGCCGTGTAT : 1228464 300 : tLeuSerAlaGlyGlyIleTyrGluMetAsnMetGluAsnPheGlySer >>>> : 316 :|||!!!|||||||||:!:||||||||||||||||||||||||!.!!:! eLeuThrAlaGlyGlyLeuTyrGluMetAsnMetGluAsnPheAlaAsn++ 1228463 : TTTGACTGCAGGTGGATTGTACGAAATGAACATGGAGAACTTTGCAAACgt..... : 1228411 317 : Target Intron 2 >>>> IleValLysThrCysValSerTyrPheThrIleL : 327 75 bp ! ! !!|||||||||:!!||||||||||||!!:| ++ThrPheLysThrCysMetSerTyrPheThrMetL 1228410 : ....................agACATTCAAAACGTGCATGTCGTACTTCACAATGC : 1228305 328 : euLeuSerLeuArgAsp : 332 ||:!!|||!!!|||!!: euMetSerPheArgGlu 1228304 : TGATGTCATTTAGGGAA : 1228288 vulgar: gi|805754598|ref|XP_012138695.1| 215 332 . KQ414851.1 1228770 1228287 - 249 M 61 183 5 0 2 I 0 53 3 0 2 M 39 117 5 0 2 I 0 71 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228288 1228770 249 - . gene_id 4 ; sequence gi|805754598|ref|XP_012138695.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1228588 1228770 . - . KQ414851.1 exonerate:protein2genome:local exon 1228588 1228770 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228586 1228587 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1228531 1228587 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1228531 1228532 . - . intron_id 0 ; splice_site "GG" KQ414851.1 exonerate:protein2genome:local cds 1228414 1228530 . - . KQ414851.1 exonerate:protein2genome:local exon 1228414 1228530 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228412 1228413 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1228339 1228413 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1228339 1228340 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228288 1228338 . - . KQ414851.1 exonerate:protein2genome:local exon 1228288 1228338 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228288 1228770 249 - . alignment_id 4 ; Query gi|805754598|ref|XP_012138695.1| ; Align 1228771 216 183 ; Align 1228531 277 117 ; Align 1228339 316 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754598|ref|XP_012138695.1| PREDICTED: odorant receptor Or2-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 231 Query range: 209 -> 322 Target range: 1222747 -> 1222352 210 : AsnMetLeuGlyIleThrSerThrAlaValGlnAlaValMetAsnPheAspGlnPr : 228 !.....:!! !!|||.!!..! ! ! !!|||..!:!!||||||.!!|||!:!|| ArgGlnIleArgIleAlaAspPheIlePheGlnCysIleMetAsnIleAspArgPr 1222747 : AGACAAATACGCATCGCCGATTTTATTTTCCAGTGCATTATGAACATCGACCGACC : 1222693 229 : oGlnGluAlaPheArgIleIleMetPheLeuLeuGlyGlnGlnPheHisLeuTyrT : 247 |.!.||| !.!!|||:!! ||||||:!!:!!!..|||:::||||||||| ! oAspGluLeuIleArgLeuAlaMetPheValValAlaGlnLysPheHisLeuLeuI 1222692 : TGACGAACTCATCAGGCTTGCGATGTTTGTCGTAGctcagaaatttcatttgctcA : 1222636 248 : hrLeuSerLeuProGlyGlnValLeuLeuAspArg{Se} >>>> Target Int : 259 !||||||||||||||||||:!!|||||||||!.!{||} 53 bp leLeuSerLeuProGlyGlnMetLeuLeuAspHis{Se}-+ 1222635 : TCCTTAGTTTACCTGGGCAAATGTTGTTAGATCAT{AG}tt............... : 1222596 260 : ron 1 >>>> {r}SerGluLeuSerGluAsnMetLysAspIlePhe<->ArgTy : 272 {|}! !... !|||:!!|||:!: !! ! !! ! !!!|| +-{r}PheSerSerSerGlnAsnLeu***IleCysCysAspSerTy 1222595 : ..........aa{T}TTCAGTAGTAGCCAAAACTTATAGATTTGTTGCGACAGTTA : 1222505 273 : rPheSerLysTrpHisGluValProValLysPheGlnLysValLeuHisIleMetL : 291 | !|||||||||:!!|||:!!||||||||| ||||||:!!:!!:!!! |||! rAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTyrThrMetG 1222504 : CGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTACACGATGC : 1222448 292 : euValArgAlaSerArgProCysMetLeuSerAlaGlyGlyIleTyrGluMetAsn : 309 !:!!|||:!!! !|||||||||!!:|||!!!|||||||||:!::!!||||||||| lnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisGluMetAsn 1222447 : AAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATGAGATGAAC : 1222394 310 : MetGluAsnPheGlySerIleValLysThrCysValSer : 322 !!:|||!:!||||||! !:!! !!!.!.! :!!!:! IleGluSerPheGlyIleValCysAsnAsnMetIleAsn 1222393 : ATCGAGAGTTTCGGAATAGTATGTAATAATATGATAAAT : 1222353 vulgar: gi|805754598|ref|XP_012138695.1| 209 322 . KQ414851.1 1222747 1222352 - 231 M 49 147 S 0 2 5 0 2 I 0 49 3 0 2 S 1 1 M 11 33 G 0 3 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222353 1222747 231 - . gene_id 5 ; sequence gi|805754598|ref|XP_012138695.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1222599 1222747 . - . KQ414851.1 exonerate:protein2genome:local exon 1222599 1222747 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1222597 1222598 . - . intron_id 1 ; splice_site "TT" KQ414851.1 exonerate:protein2genome:local intron 1222546 1222598 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1222546 1222547 . - . intron_id 0 ; splice_site "AA" KQ414851.1 exonerate:protein2genome:local cds 1222353 1222545 . - . KQ414851.1 exonerate:protein2genome:local exon 1222353 1222545 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222353 1222747 231 - . alignment_id 5 ; Query gi|805754598|ref|XP_012138695.1| ; Align 1222748 210 147 ; Align 1222545 260 33 ; Align 1222509 271 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754598|ref|XP_012138695.1| PREDICTED: odorant receptor Or2-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 179 Query range: 61 -> 153 Target range: 1234338 -> 1234059 62 : AlaLeuTyrArgThrSerLeuTrpValPheMetLeuLeuPheLeuSerLeuProLe : 80 !.!!!!!:! ! !!!!||| ! !||||||:!!:!!|||||| !:!!||||| ValPhePheSerAspThrLeuLeuSerPheMetValValPheLeuLeuValProLe 1234338 : GTGTTCTTCTCAGATACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATT : 1234284 81 : uSerAlaProIleLeuAspPheValSerGlnSerAsnLysThrArgThrLysIleP : 99 | ! !|||.!!|||||| !!||| !! !! !|||:!!|||||| !!::! ! uValPheProPheLeuAspValValLeuProLeuAsnGluThrArgProArgGlnG 1234283 : AGTTTTTCCATTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGC : 1234227 100 : roLeuPheLysLeuAsnTyrIle<->ValAsnThrAspAspTyrPheTyrPheVal : 116 ! !|||!:!:!!||||||:!! !!:!! !! |||||||||!:! !||| lnGlyPheArgValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSerVal 1234226 : AAGGATTCAGAGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTG : 1234173 117 : TyrLeuHisSerValCysCysSerLeuThrIleValIleValIleIleAlaMetAs : 135 |||!!!!!.! !!.!!! !!:!!:!!..!:!!|||!!::!!||||||.!!:!:|| TyrPheGlnLeuAlaTrpGlyAlaValValValValMetIleIleIleThrValAs 1234172 : TACTTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGA : 1234116 136 : pSerLeuTyrMetValIlePheHisTyrIleCysGlyValPheAlaLeuCysGly : 153 |||||||||||||:!!|||.!!|||:!! ! !!|||:!!||||||:!!|||||| pSerLeuTyrMetIleIleIleHisHisAlaSerGlyMetPheAlaValCysGly 1234115 : CTCGTTGTACATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTGTGCGGG : 1234060 vulgar: gi|805754598|ref|XP_012138695.1| 61 153 . KQ414851.1 1234338 1234059 - 179 M 45 135 G 0 3 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234338 179 - . gene_id 6 ; sequence gi|805754598|ref|XP_012138695.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234338 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234338 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234338 179 - . alignment_id 6 ; Query gi|805754598|ref|XP_012138695.1| ; Align 1234339 62 135 ; Align 1234201 107 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754598|ref|XP_012138695.1| PREDICTED: odorant receptor Or2-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 186 -> 266 Target range: 1239471 -> 1238684 187 : GluAlaIleLysPheTyrGluTyrMetAsnGluSerThrArgThrSerTyrLeuPh : 205 .!.|||.!!!:!! !|||.!. !:!!.!.:!!|||!:! ! !||||||||||| HisAlaPheArgCysTyrAsnValLeuGlnLysSerSerValLeuSerTyrLeuPh 1239471 : CATGCTTTCAGGTGTTACAATGTTCTGCAGAAAAGCAGTGTGCTCAGTTACTTGTT : 1239417 206 : eGlnValGlyLeuAsnMetLeuGlyIleThrSerThrAlaValGlnAlaVal >> : 223 ||||||||||||||||!!::!!|||:!!!:! !:!!|||||||||... eGlnValGlyLeuAsnIleValGlyLeuSerValSerAlaValGlnValArg-+ 1239416 : TCAAGTTGGATTAAACATAGTGGGCCTTAGTGTGTCAGCTGTTCAAgtaagaat.. : 1239361 224 : >> Target Intron 1 >>>> MetAsnPheAspGlnProGlnGluAlaPheA : 233 547 bp !|||.!.|||.!.||| !! !|||!!.| -+GlyAsnIleAspAspProThrValAlaLeuA 1239360 : .......................tgGGGAATATAGACGATCCGACAGTAGCTTTGA : 1238786 234 : rgIleIleMetPheLeuLeuGlyGlnGlnPheHisLeuTyrThrLeuSerLeuPro : 251 ||! ! !! ! !!! ! !!.!:!!|||.!!||||||!:!! !:!!|||:!!||| rgAsnAlaThrValTrpGlyAlaLysGlnIleHisLeuPheIleIleSerIlePro 1238785 : GAAACGCTACGGTCTGGGGGGCTAAGCAAATTCACCTGTTCATCATCAGTATACCT : 1238732 252 : GlyGlnValLeuLeuAspArgSerSerGluLeuSerGluAsnMet : 266 ||||||||||||:!!|||!.!!!! !|||||||||.!.:!!||| GlyGlnValLeuIleAspHisCysValGluLeuSerAsnAspMet 1238731 : GGACAGGTGCTTATAGATCATTGTGTGGAGCTGTCAAACGACATG : 1238685 vulgar: gi|805754598|ref|XP_012138695.1| 186 266 . KQ414851.1 1239471 1238684 - 126 M 36 108 5 0 2 I 0 543 3 0 2 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1238685 1239471 126 - . gene_id 7 ; sequence gi|805754598|ref|XP_012138695.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1239364 1239471 . - . KQ414851.1 exonerate:protein2genome:local exon 1239364 1239471 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1239362 1239363 . - . intron_id 1 ; splice_site "at" KQ414851.1 exonerate:protein2genome:local intron 1238817 1239363 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1238817 1238818 . - . intron_id 0 ; splice_site "TG" KQ414851.1 exonerate:protein2genome:local cds 1238685 1238816 . - . KQ414851.1 exonerate:protein2genome:local exon 1238685 1238816 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1238685 1239471 126 - . alignment_id 7 ; Query gi|805754598|ref|XP_012138695.1| ; Align 1239472 187 108 ; Align 1238817 223 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754623|ref|XP_012138758.1| PREDICTED: odorant receptor 9a-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 330 Query range: 84 -> 213 Target range: 1234578 -> 1234059 85 : LeuLeuGlnIleLysIleLeuLeuAspArgIleValArgAspTrpLys<-><->Th : 101 :!!||| ...::: ::: |||! !:!:..!|||!!:|||:!! ! IleLeu***PheGlnLysMetTyrAspLeuValThrArgGluTrpGluGlnLeuAr 1234578 : ATATTatagtttcaaaaaatgtatgaTCTTGTGACAAGAGAGTGGGAGCAGTTGAG : 1234524 102 : rMetGlySerGluLeuHisValLeuAspGluIleThrAlaThrGlyTyrArgLeuA : 120 !|||..!..!|||||||||||||||!!:!!:|||||| ! !||| !!:!|||| gMetAsnAspGluLeuHisValLeuGluAspIleThrMetGlnGlyGlyLysLeuA 1234523 : GATGAACGACGAGTTGCATGTGCTTGAAGACATTACCATGCAAGGTGGTAAACTCG : 1234467 121 : laHisLeuTyrArg{V} >>>> Target Intron 1 >>>> {al}ThrLeu : 127 ||!!.!!!||||||{ } 126 bp { !}|||||| laGlnPheTyrArg{A}++ ++{sn}ThrLeu 1234466 : CGCAATTCTACAGA{A}gt.........................ag{AT}ACATTA : 1234320 128 : LeuThrPheThrMetIlePheAsnTyrIleProLeuIleProProThrLeuAspIl : 146 |||:!!|||! !:!::!!||| :!!||||||:!! !||| !||||||:! LeuSerPheMetValValPheLeuLeuValProLeuValPheProPheLeuAspVa 1234319 : CTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGT : 1234263 147 : eIleLeuProArgAsnGluSerArgProArgHisGlnLeuPheGlnValAsnTyrV : 165 !:!!|||||| !||||||!!!|||||||||!!.||| !|||::!|||||||||: lValLeuProLeuAsnGluThrArgProArgGlnGlnGlyPheArgValAsnTyrL 1234262 : CGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACTATC : 1234206 166 : alPhePheAspAlaAspAspHisPheIlePheThrTyrLeuHisMetPheTrpAla : 183 !!!:!||||||! !! |||:!!|||.!! !..!|||!!!!!.:!! !|||!.! euTyrPheAspGluAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrpGly 1234205 : TATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGT : 1234152 184 : GlySerLeuThrValPheValValValThrValAspSerLeuTyrMetLeuIleIl : 202 !.! !:!!..!|||.!.:!!:!!:!!|||||||||||||||||||||:!!||||| AlaValValValValMetIleIleIleThrValAspSerLeuTyrMetIleIleIl 1234151 : GCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGATAATAAT : 1234095 203 : eHisHisAlaSerGlyLeuPheAspValCysGly : 213 ||||||||||||||||:!!|||! !||||||||| eHisHisAlaSerGlyMetPheAlaValCysGly 1234094 : TCACCATGCCAGCGGAATGTTCGCCGTGTGCGGG : 1234060 vulgar: gi|805754623|ref|XP_012138758.1| 84 213 . KQ414851.1 1234578 1234059 - 330 M 16 48 G 0 6 M 24 72 S 0 1 5 0 2 I 0 122 3 0 2 S 1 2 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234578 330 - . gene_id 1 ; sequence gi|805754623|ref|XP_012138758.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1234452 1234578 . - . KQ414851.1 exonerate:protein2genome:local exon 1234452 1234578 . - . insertions 6 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234450 1234451 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1234326 1234451 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1234326 1234327 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1234060 1234325 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234325 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234578 330 - . alignment_id 1 ; Query gi|805754623|ref|XP_012138758.1| ; Align 1234579 85 48 ; Align 1234525 101 72 ; Align 1234324 126 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754623|ref|XP_012138758.1| PREDICTED: odorant receptor 9a-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 283 Query range: 289 -> 397 Target range: 1233592 -> 1233123 290 : GlnIleIleLeuTyrMetAspArgProLeuAspSerValArgPheValLeuPhePh : 308 |||! !:!!||| :!!||||||||| !!!::!!:!!|||! !!.!:!!|||.! GlnThrValLeuThrLeuAspArgProAlaGluAlaLeuArgCysAlaValPheLe 1233592 : CAGACAGTCCTCACACTGGACAGGCCGGCAGAAGCTCTTAGATGTGCTGTGTTCCT : 1233538 309 : eLeuGlyGluHisPheHisLeuTyrIleIleSerLeuLeuGlyGlnIleValLeuA : 327 !:!!!.!|||!!.|||||||||!:!||||||||||||! !||||||! !:!!:!!: uValAlaGluGlnPheHisLeuPheIleIleSerLeuProGlyGlnThrLeuValA 1233537 : TGTAGCGGAGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACACTCGTGG : 1233481 328 : snHisSerLeuLeuLeuProGluLys{Il} >>>> Target Intron 1 >>> : 336 !!|||!!! ! !||| !!:!! ! {||} 70 bp spHisCysThrLysLeuSerLysAsp{Il}++ 1233480 : ATCATTGTACGAAACTATCGAAGGAT{AT}gt........................ : 1233450 337 : > {e}TyrGlySerAsnTrpAspAspIleProIleLysPheGlnLysLeuLeuPh : 353 {|}|||..!|||!..||| !! ! :!!||| !|||||||||::!:!!:!!!: ++{e}TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTy 1233449 : .ag{A}TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTA : 1233333 354 : eLysMetIleIleArgCysSerArgProCysIleLeuSerAlaGlyGlyLeuTyrA : 372 !! !||| !||||||..! !!:!||||||:!!|||!!!|||||||||||||||! rThrMetGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrG 1233332 : CACGATGCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATG : 1233276 373 : spMetAsnMetGluAsnTyrGlyLys >>>> Target Intron 2 >>>> A : 381 !:|||||||||||||||!:!!.!!!. 75 bp . luMetAsnMetGluAsnPheAlaAsn++ ++T 1233275 : AAATGAACATGGAGAACTTTGCAAACgt.........................aga : 1233174 382 : laValLysAlaCysMetSerTyrPheThrMetPheLeuSerMetArgGlu : 397 !! !!|||.!!|||||||||||||||||||||.!.:!!|||:!:|||||| hrPheLysThrCysMetSerTyrPheThrMetLeuMetSerLeuArgGlu 1233173 : CATTCAAAACGTGCATGTCATACTTCACAATGCTGATGTCACTTAGAGAA : 1233124 vulgar: gi|805754623|ref|XP_012138758.1| 289 397 . KQ414851.1 1233592 1233123 - 283 M 46 138 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 44 132 5 0 2 I 0 71 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233124 1233592 283 - . gene_id 2 ; sequence gi|805754623|ref|XP_012138758.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233453 1233592 . - . KQ414851.1 exonerate:protein2genome:local exon 1233453 1233592 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233451 1233452 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233383 1233452 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233383 1233384 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233250 1233382 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233382 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 1 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233124 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233124 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233124 1233592 283 - . alignment_id 2 ; Query gi|805754623|ref|XP_012138758.1| ; Align 1233593 290 138 ; Align 1233382 337 132 ; Align 1233175 381 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754623|ref|XP_012138758.1| PREDICTED: odorant receptor 9a-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 271 Query range: 125 -> 213 Target range: 1229488 -> 1229224 126 : ThrLeuLeuThrPheThrMetIlePheAsnTyrIleProLeuIleProProThrLe : 144 .!!|||||| ! ! ! :!!||| :!!||||||.!! !|||.!!|| AlaLeuLeuPheAlaMetCysValPheLeuLeuValProLeuPheGlyProAlaLe 1229488 : GCTTTACTCTTCGCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCT : 1229434 145 : uAspIleIleLeuProArgAsnGluSerArgProArgHisGlnLeuPheGlnValA : 163 |||||||:!!|||||| !||||||!!!|||||||||!!.|||||||||::!|||| uAspIleValLeuProSerAsnGluThrArgProArgGlnGlnLeuPheArgValA 1229433 : GGACATCGTCCTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTA : 1229377 164 : snTyrValPhePheAspAlaAspAspHisPheIlePheThrTyrLeuHisMetPhe : 181 |||||:!!.!!|||||| !! |||:!!|||.!!!:!..!|||:!!!!.:!!||| snTyrIleIlePheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPhe 1229376 : ACTATATAATTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTT : 1229323 182 : TrpAlaGlySerLeuThrValPheValValValThrValAspSerLeuTyrMetLe : 200 |||..! !! !:!! !|||.!.!.!:!!:!!|||||||||||||||||||||:! TrpCysThrIleValLeuValMetAlaIleIleThrValAspSerLeuTyrMetIl 1229322 : TGGTGTACAATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGAT : 1229266 201 : uIleIleHisHisAlaSerGlyLeuPheAspValCysGly : 213 !||||||:!!||||||||||||:!!|||! !:!!|||||| eIleIleTyrHisAlaSerGlyMetPheAlaIleCysGly 1229265 : CATAATTTACCATGCCAGCGGAATGTTCGCTATATGCGGG : 1229225 vulgar: gi|805754623|ref|XP_012138758.1| 125 213 . KQ414851.1 1229488 1229224 - 271 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229488 271 - . gene_id 3 ; sequence gi|805754623|ref|XP_012138758.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229225 1229488 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229488 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229488 271 - . alignment_id 3 ; Query gi|805754623|ref|XP_012138758.1| ; Align 1229489 126 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754623|ref|XP_012138758.1| PREDICTED: odorant receptor 9a-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 213 Query range: 125 -> 213 Target range: 1243860 -> 1243599 126 : ThrLeuLeuThrPheThrMetIlePheAsnTyrIleProLeuIleProProThrLe : 144 ||||||!!! !|||:!!!!:|||||| ! .!!|||||||||||||||! !|| ThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleLe 1243860 : ACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATT : 1243806 145 : uAspIleIleLeuProArgAsnGluSerArgProArgHisGlnLeuPheGlnValA : 163 ||||:!!:!!! !|||! !||||||!!!||| !!||| ::::::...::::::. uAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuG 1243805 : GGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgc : 1243749 164 : snTyrValPhePheAspAlaAspAspHisPheIlePheThrTyrLeuHisMetPhe : 181 ..|||:!! |||||| ::: :::||| |||:!!:!!! ! lnTyrLeu---PheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGly 1243748 : aataccTG---TTCGACAtggagaagaatttttattcattatacGTCTACACTGGC : 1243698 182 : TrpAlaGlySerLeuThrValPheValValValThrValAspSerLeuTyrMetLe : 200 |||..!..!! !:!!|||:!!.!.|||:!!:!!|||:!!|||:!!||||||:!!:! TrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValVa 1243697 : TGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGT : 1243641 201 : uIleIleHisHisAlaSerGlyLeuPheAspValCysGly : 213 !||||||||||||.!!!!!|||||||||! !||||||||| lIleIleHisHisThrCysGlyLeuPheAlaValCysGly 1243640 : AATCATTCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: gi|805754623|ref|XP_012138758.1| 125 213 . KQ414851.1 1243860 1243599 - 213 M 40 120 G 1 0 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243860 213 - . gene_id 4 ; sequence gi|805754623|ref|XP_012138758.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243860 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243860 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243860 213 - . alignment_id 4 ; Query gi|805754623|ref|XP_012138758.1| ; Align 1243861 126 120 ; Align 1243741 167 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754623|ref|XP_012138758.1| PREDICTED: odorant receptor 9a-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 207 Query range: 124 -> 213 Target range: 1240088 -> 1239821 125 : ValThrLeuLeuThrPheThrMetIlePheAsnTyrIleProLeuIleProProTh : 143 |||..!|||!!!:!: ...|||||| :!!|||:::...|||||| ValValLeuPheSerValLeuPheIlePheLeuValValProIlePheProProLe 1240088 : GTCGTTTTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcctcctct : 1240034 144 : rLeuAspIleIleLeuProArgAsnGluSerArgProArgHisGlnLeuPheGlnV : 162 |||||||||:!! !||| !||||||!!!||| !!|||...::::::|||:::| uLeuAspIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIlePheLysV 1240033 : tctggACATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatattcaaag : 1239977 163 : alAsnTyrValPhePheAspAlaAspAspHisPheIlePheThrTyrLeuHisMet : 180 ||||||||:!!.!!.!!||| !|||!!:!!. !:!:.!!||||||!!!|||:!! alAsnTyrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPheHisLeu 1239976 : ttaaTTACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTTCACTTG : 1239923 181 : PheTrpAlaGlySerLeuThrValPheValValValThrValAspSerLeuTyrMe : 199 ! !|||.!! !! ! ! !! !.!. !|||:!!!:! !!!:! !:!!|||:! SerTrpThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIleTyrVa 1239922 : TCTTGGACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGT : 1239866 200 : tLeuIleIleHisHisAlaSerGlyLeuPheAspValCysGly : 213 :|||:!!|||||||||.!!||||||||||||! !|||..!||| lLeuLeuIleHisHisThrSerGlyLeuPheAlaValAlaGly 1239865 : CCTTCTTATTCATCATACCAGCGGTCTGTTTGCTGTGGCTGgg : 1239822 vulgar: gi|805754623|ref|XP_012138758.1| 124 213 . KQ414851.1 1240088 1239821 - 207 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240088 207 - . gene_id 5 ; sequence gi|805754623|ref|XP_012138758.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239822 1240088 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240088 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240088 207 - . alignment_id 5 ; Query gi|805754623|ref|XP_012138758.1| ; Align 1240089 125 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754623|ref|XP_012138758.1| PREDICTED: odorant receptor 9a-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 193 Query range: 336 -> 397 Target range: 1222505 -> 1222002 337 : TyrGlySerAsnTrpAspAspIleProIleLysPheGlnLysLeuLeuPheLysMe : 355 |||!.!|||!!.||| !!!!::!!|||:!!||| |||||||||:!!!:!! !|| TyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTyrThrMe 1222505 : TACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTACACGAT : 1222451 356 : tIleIleArgCysSerArgProCysIleLeuSerAlaGlyGlyLeuTyrAspMetA : 374 | !!!:|||! !! !|||||||||||||||!!!|||||||||:!!:!!!!:|||| tGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisGluMetA 1222450 : GCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATGAGATGA : 1222394 375 : snMetGluAsnTyrGlyLys >>>> Target Intron 1 >>>> AlaValL : 383 ||!!:|||!:!!:!|||! ! 320 bp |||:!!| snIleGluSerPheGlyIle++ ++AlaIleL 1222393 : ACATCGAGAGTTTCGGAATAgt.........................aggCTATTA : 1222047 384 : ysAlaCysMetSerTyrPheThrMetPheLeuSerMetArgGlu : 397 ||||||||||||||||||||! !||||||||||||:!!!:!||| ysAlaCysMetSerTyrPheMetMetPheLeuSerLeuLysGlu 1222046 : AAGCGTGCATGTCCTATTTCATGATGTTCCTGTCGTTGAAAGAA : 1222003 vulgar: gi|805754623|ref|XP_012138758.1| 336 397 . KQ414851.1 1222505 1222002 - 193 M 44 132 5 0 2 I 0 316 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222003 1222505 193 - . gene_id 6 ; sequence gi|805754623|ref|XP_012138758.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1222374 1222505 . - . KQ414851.1 exonerate:protein2genome:local exon 1222374 1222505 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1222372 1222373 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222054 1222373 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1222054 1222055 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1222003 1222053 . - . KQ414851.1 exonerate:protein2genome:local exon 1222003 1222053 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222003 1222505 193 - . alignment_id 6 ; Query gi|805754623|ref|XP_012138758.1| ; Align 1222506 337 132 ; Align 1222054 381 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754623|ref|XP_012138758.1| PREDICTED: odorant receptor 9a-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 192 Query range: 280 -> 378 Target range: 1228785 -> 1228419 281 : HisIleGluAlaHisThrLeuPheSerGlnIleIleLeuTyrMetAspArgProLe : 299 ::::::::: !!.!|||! !! !||||||!!:||| !:!!||||||||| AsnLeuLysArgGlyAsnLeuSerPheGlnIleMetLeuAlaLeuAspArgProSe 1228785 : aatttaaaacgcGGTAACCTTTCTTTCCAGATAATGCTCGCCCTGGATAGACCGAG : 1228731 300 : uAspSerValArgPheValLeuPhePheLeuGlyGluHisPheHisLeuTyrIleI : 318 !!!::!!:!!|||!:! !:!! !!.!! !|||! !!!.|||||||||!:!|||| rGluAlaIleArgTyrSerValValLeuGlyGlyAlaGlnPheHisLeuPheIleI 1228730 : CGAAGCTATTAGATATTCTGTGGTTCTTGGAGGTGCGCAATTTCATTTGTTCATCA : 1228674 319 : leSerLeuLeuGlyGlnIleValLeuAsnHisSerLeuLeuLeu{Pr} >>>> T : 333 ||||||||! !||||||! !:!!:!!:!!|||!!! !:!!|||{ !} leSerLeuProGlyGlnThrLeuValAspHisCysThrMetLeu{Th}+- 1228673 : TTAGCTTACCTGGACAGACACTCGTGGATCATTGTACCATGCTA{AC}ga...... : 1228625 334 : arget Intron 1 >>>> {o}GluLysIleTyrGlySerAsnTrpAspAspIl : 344 72 bp {!} ! ! !|||..!|||!..||| !! ! :! +-{r}LeuTyrArgTyrSerSerThrTrpTyrLysVa 1228624 : ...................at{T}CTTTACAGATACTCTTCCACGTGGTATAAGGT : 1228524 345 : eProIleLysPheGlnLysLeuLeuPheLysMetIleIleArgCysSerArgProC : 363 ! !! !|||||||||::!:!!:!!!:!! !||| !||||||..! !!:!|||| lSerAlaLysPheGlnArgValIleTyrMetMetGlnIleArgAlaLeuLysProC 1228523 : ATCGGCAAAATTTCAACGAGTAATTTACATGATGCAAATAAGGGCTCTAAAGCCGT : 1228467 364 : ysIleLeuSerAlaGlyGlyLeuTyrAspMetAsnMetGluAsnTyr : 378 ||||||||!!!|||||||||||||||!!:|||||||||||||||!:! ysIleLeuThrAlaGlyGlyLeuTyrGluMetAsnMetGluAsnPhe 1228466 : GTATTTTGACTGCAGGTGGATTGTACGAAATGAACATGGAGAACTTT : 1228420 vulgar: gi|805754623|ref|XP_012138758.1| 280 378 . KQ414851.1 1228785 1228419 - 192 M 52 156 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228420 1228785 192 - . gene_id 7 ; sequence gi|805754623|ref|XP_012138758.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1228628 1228785 . - . KQ414851.1 exonerate:protein2genome:local exon 1228628 1228785 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228626 1228627 . - . intron_id 1 ; splice_site "GA" KQ414851.1 exonerate:protein2genome:local intron 1228556 1228627 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1228556 1228557 . - . intron_id 0 ; splice_site "AT" KQ414851.1 exonerate:protein2genome:local cds 1228420 1228555 . - . KQ414851.1 exonerate:protein2genome:local exon 1228420 1228555 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228420 1228785 192 - . alignment_id 7 ; Query gi|805754623|ref|XP_012138758.1| ; Align 1228786 281 156 ; Align 1228555 334 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754623|ref|XP_012138758.1| PREDICTED: odorant receptor 9a-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 183 Query range: 121 -> 213 Target range: 1224300 -> 1224024 122 : LeuTyrArgValThrLeuLeuThrPheThrMetIlePheAsnTyrIleProLeuIl : 140 :::::: :!!|||! !! ! !! !:!::!!!:!! !.!!|||||||| IlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLeuIl 1224300 : attttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGAT : 1224246 141 : eProProThrLeuAspIleIleLeuProArgAsnGluSerArgProArgHisGlnL : 159 | !|||..!||||||:!!:!! !||| !||||||!!!|||||||||...! | eAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLeuL 1224245 : AAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTT : 1224189 160 : euPheGlnValAsnTyrValPhePheAspAlaAspAspHisPheIlePheThrTyr : 177 ||.!!! !|||!:!|||:!!|||.!.|||! ! !!!!:|||||| ! !..! !! euLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValAsn 1224188 : TGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAAT : 1224135 178 : LeuHisMetPheTrpAlaGlySerLeuThrValPheValValValThrValAspSe : 196 !!!|||:!:!:! ::!! !! !! ! !! !.!.:!!:!!:!!.!!||||||! PheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAspMe 1224134 : TTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATAT : 1224078 197 : rLeuTyrMetLeuIleIleHisHisAlaSerGlyLeuPheAspValCysGly : 213 !||||||!!: !|||||| !||| !!!!|||||||||! ||||||||| tLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaValCysGly 1224077 : GTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: gi|805754623|ref|XP_012138758.1| 121 213 . KQ414851.1 1224300 1224024 - 183 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224300 183 - . gene_id 8 ; sequence gi|805754623|ref|XP_012138758.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224300 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224300 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224300 183 - . alignment_id 8 ; Query gi|805754623|ref|XP_012138758.1| ; Align 1224301 122 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754623|ref|XP_012138758.1| PREDICTED: odorant receptor 9a-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 158 Query range: 336 -> 397 Target range: 1242796 -> 1242521 337 : TyrGlySerAsnTrpAspAspIleProIleLysPheGlnLysLeuLeuPheLysMe : 355 |||..!|||! ||| !!.!.! !|||:!: !.!!||||||:!!||| !! !:! TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIleVa 1242796 : TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATATAGT : 1242742 356 : tIleIleArgCysSerArgProCysIleLeuSerAlaGlyGlyLeuTyrAspMetA : 374 : !||||||! !.!!!:!||||||! !||| !|||||||||||||||!!:|||| lGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluMetA 1242741 : ACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAATGA : 1242685 375 : snMetGluAsnTyrGlyLys >>>> Target Intron 1 >>>> AlaValL : 383 ||!!:||||||!:!|||..! 92 bp ..! !!| snIleGluAsnPheGlySer++ ++ThrPheL 1242684 : ACATTGAGAATTTTGGATCAgt.........................agacTTTCA : 1242566 384 : ysAlaCysMetSerTyrPheThrMetPheLeuSerMetArgGlu : 397 ||.!!|||!!:|||||||||||||||.!!||||||.!.!:!!!: ysThrCysIleSerTyrPheThrMetLeuLeuSerPheLysAsp 1242565 : AAACCTGCATATCGTACTTTACGATGCTCTTATCATTCAAAGAC : 1242522 vulgar: gi|805754623|ref|XP_012138758.1| 336 397 . KQ414851.1 1242796 1242521 - 158 M 44 132 5 0 2 I 0 88 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242522 1242796 158 - . gene_id 9 ; sequence gi|805754623|ref|XP_012138758.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1242665 1242796 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242796 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242522 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242522 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242522 1242796 158 - . alignment_id 9 ; Query gi|805754623|ref|XP_012138758.1| ; Align 1242797 337 132 ; Align 1242573 381 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754569|ref|XP_012138607.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 192 Query range: 108 -> 169 Target range: 1233381 -> 1233123 109 : TyrAsnCysAsnTrpTyrLysIleProIleLysPheGlnLysLeuLeuCysThrMe : 127 |||::!! !!..|||||||||:!!||| !|||||||||::!:!!:!!! !||||| TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMe 1233381 : TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGAT : 1233327 128 : tIleGlyArgCysAsnArgProCysIleLeuSerAlaGlyGlyLeuTyrAspMetA : 146 | ! !|||..! !:!||||||:!!|||!!!|||||||||||||||!!:|||| tGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetA 1233326 : GCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGA : 1233270 147 : snMetGluAsnTyrGlyLys >>>> Target Intron 1 >>>> AlaValL : 155 |||||||||||!:!!.!!!. 75 bp .!! !!| snMetGluAsnPheAlaAsn++ ++ThrPheL 1233269 : ACATGGAGAACTTTGCAAACgt.........................agaCATTCA : 1233168 156 : ysAlaCysMetSerTyrPheThrMetPheLeuSerMetArgAsp : 169 ||.!!|||||||||||||||||||||.!.:!!|||:!:|||!!: ysThrCysMetSerTyrPheThrMetLeuMetSerLeuArgGlu 1233167 : AAACGTGCATGTCATACTTCACAATGCTGATGTCACTTAGAGAA : 1233124 vulgar: gi|805754569|ref|XP_012138607.1| 108 169 . KQ414851.1 1233381 1233123 - 192 M 44 132 5 0 2 I 0 71 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233124 1233381 192 - . gene_id 1 ; sequence gi|805754569|ref|XP_012138607.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233250 1233381 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233381 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233124 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233124 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233124 1233381 192 - . alignment_id 1 ; Query gi|805754569|ref|XP_012138607.1| ; Align 1233382 109 132 ; Align 1233175 153 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754569|ref|XP_012138607.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 188 Query range: 108 -> 169 Target range: 1222505 -> 1222002 109 : TyrAsnCysAsnTrpTyrLysIleProIleLysPheGlnLysLeuLeuCysThrMe : 127 ||| !! !!!.||||||:!!:!!|||:!!||| |||||||||:!!! !||||| TyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTyrThrMe 1222505 : TACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTACACGAT : 1222451 128 : tIleGlyArgCysAsnArgProCysIleLeuSerAlaGlyGlyLeuTyrAspMetA : 146 | ! !|||! !! |||||||||||||||!!!|||||||||:!!:!!!!:|||| tGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisGluMetA 1222450 : GCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATGAGATGA : 1222394 147 : snMetGluAsnTyrGlyLys >>>> Target Intron 1 >>>> AlaValL : 155 ||!!:|||!:!!:!|||! ! 320 bp |||:!!| snIleGluSerPheGlyIle++ ++AlaIleL 1222393 : ACATCGAGAGTTTCGGAATAgt.........................aggCTATTA : 1222047 156 : ysAlaCysMetSerTyrPheThrMetPheLeuSerMetArgAsp : 169 ||||||||||||||||||||! !||||||||||||:!!!:!!!: ysAlaCysMetSerTyrPheMetMetPheLeuSerLeuLysGlu 1222046 : AAGCGTGCATGTCCTATTTCATGATGTTCCTGTCGTTGAAAGAA : 1222003 vulgar: gi|805754569|ref|XP_012138607.1| 108 169 . KQ414851.1 1222505 1222002 - 188 M 44 132 5 0 2 I 0 316 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222003 1222505 188 - . gene_id 2 ; sequence gi|805754569|ref|XP_012138607.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1222374 1222505 . - . KQ414851.1 exonerate:protein2genome:local exon 1222374 1222505 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1222372 1222373 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222054 1222373 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1222054 1222055 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1222003 1222053 . - . KQ414851.1 exonerate:protein2genome:local exon 1222003 1222053 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222003 1222505 188 - . alignment_id 2 ; Query gi|805754569|ref|XP_012138607.1| ; Align 1222506 109 132 ; Align 1222054 153 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754569|ref|XP_012138607.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 166 Query range: 108 -> 169 Target range: 1242796 -> 1242521 109 : TyrAsnCysAsnTrpTyrLysIleProIleLysPheGlnLysLeuLeuCysThrMe : 127 ||||||! ! ||||||:!!! !|||:!: !.!!||||||:!!||| !! !:! TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIleVa 1242796 : TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATATAGT : 1242742 128 : tIleGlyArgCysAsnArgProCysIleLeuSerAlaGlyGlyLeuTyrAspMetA : 146 : ! !|||! !..!!:!||||||! !||| !|||||||||||||||!!:|||| lGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluMetA 1242741 : ACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAATGA : 1242685 147 : snMetGluAsnTyrGlyLys >>>> Target Intron 1 >>>> AlaValL : 155 ||!!:||||||!:!|||..! 92 bp ..! !!| snIleGluAsnPheGlySer++ ++ThrPheL 1242684 : ACATTGAGAATTTTGGATCAgt.........................agacTTTCA : 1242566 156 : ysAlaCysMetSerTyrPheThrMetPheLeuSerMetArgAsp : 169 ||.!!|||!!:|||||||||||||||.!!||||||.!.!:!||| ysThrCysIleSerTyrPheThrMetLeuLeuSerPheLysAsp 1242565 : AAACCTGCATATCGTACTTTACGATGCTCTTATCATTCAAAGAC : 1242522 vulgar: gi|805754569|ref|XP_012138607.1| 108 169 . KQ414851.1 1242796 1242521 - 166 M 44 132 5 0 2 I 0 88 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242522 1242796 166 - . gene_id 3 ; sequence gi|805754569|ref|XP_012138607.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1242665 1242796 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242796 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242522 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242522 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242522 1242796 166 - . alignment_id 3 ; Query gi|805754569|ref|XP_012138607.1| ; Align 1242797 109 132 ; Align 1242573 153 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754569|ref|XP_012138607.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 108 -> 150 Target range: 1228545 -> 1228419 109 : TyrAsnCysAsnTrpTyrLysIleProIleLysPheGlnLysLeuLeuCysThrMe : 127 |||::!! !!..|||||||||:!! !! !|||||||||::!:!!:!!! !! !|| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 128 : tIleGlyArgCysAsnArgProCysIleLeuSerAlaGlyGlyLeuTyrAspMetA : 146 | ! !|||..! !:!||||||||||||!!!|||||||||||||||!!:|||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 147 : snMetGluAsnTyr : 150 |||||||||||!:! snMetGluAsnPhe 1228433 : ACATGGAGAACTTT : 1228420 vulgar: gi|805754569|ref|XP_012138607.1| 108 150 . KQ414851.1 1228545 1228419 - 135 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228420 1228545 135 - . gene_id 4 ; sequence gi|805754569|ref|XP_012138607.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228420 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228420 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228420 1228545 135 - . alignment_id 4 ; Query gi|805754569|ref|XP_012138607.1| ; Align 1228546 109 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754569|ref|XP_012138607.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 16 -> 62 Target range: 1233902 -> 1233669 17 : TyrAspGlnPheLysGlnCysValMetThrHisHisLysAlaLeu{Ly} >>>> : 32 :!!!!:|||||||||!:!||||||! |||||| !!||||||:!!{:!} HisGluGlnPheLysArgCysValThrThrHisAspLysAlaIle{Gl}++ 1233902 : CACGAACAGTTCAAACGATGCGTGACTACGCACGATAAAGCTATC{GA}gt..... : 1233853 33 : Target Intron 1 >>>> {s}PhePheAspAsnLeuGlnGluCysSerLysA : 43 95 bp {!}|||!:!|||! !|||.!.||| !!|||::!| ++{u}PheTyrAspIleLeuAsnGluSerSerArgA 1233852 : ....................ag{G}TTTTACGATATTCTAAACGAGAGCAGTCGAA : 1233729 44 : snMetPheLeuAlaLeuValAlaIleAsnIleThrIleIleSerMetThrAlaVal : 61 ||! !:!||| !! !|||!.!:!:|||!!:! ! !||||||:!!||||||||| snSerTyrLeuIleGlnValGlyLeuAsnMetMetGlyIleSerValThrAlaVal 1233728 : ATAGCTACTTGATTCAGGTTGGATTGAACATGATGGGCATTAGCGTGACCGCTGTC : 1233675 62 : Gln : 62 ||| Gln 1233674 : CAG : 1233670 vulgar: gi|805754569|ref|XP_012138607.1| 16 62 . KQ414851.1 1233902 1233669 - 109 M 15 45 S 0 2 5 0 2 I 0 91 3 0 2 S 1 1 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233670 1233902 109 - . gene_id 5 ; sequence gi|805754569|ref|XP_012138607.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233856 1233902 . - . KQ414851.1 exonerate:protein2genome:local exon 1233856 1233902 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233854 1233855 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233761 1233855 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233761 1233762 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233670 1233760 . - . KQ414851.1 exonerate:protein2genome:local exon 1233670 1233760 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233670 1233902 109 - . alignment_id 5 ; Query gi|805754569|ref|XP_012138607.1| ; Align 1233903 17 45 ; Align 1233760 33 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754636|ref|XP_012138785.1| PREDICTED: odorant receptor 4-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 200 Query range: 105 -> 166 Target range: 1233381 -> 1233123 106 : TyrAsnCysAsnTrpTyrGluValProIleLysPheGlnLysLeuLeuCysPheMe : 124 |||::!! !!..||||||:!!|||||| !|||||||||::!:!!:!!! ! || TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMe 1233381 : TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGAT : 1233327 125 : tIleValArgSerSerLysProCysIleLeuSerAlaGlyGlyLeuTyrAspMetA : 143 | !:!!|||:!! !|||||||||:!!|||!!!|||||||||||||||!!:|||| tGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetA 1233326 : GCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGA : 1233270 144 : snMetGlnAsnTyrAlaIle >>>> Target Intron 1 >>>> AlaValL : 152 |||||:!!|||!:!|||! ! 75 bp .!! !!| snMetGluAsnPheAlaAsn++ ++ThrPheL 1233269 : ACATGGAGAACTTTGCAAACgt.........................agaCATTCA : 1233168 153 : ysThrCysMetSerTyrPheThrMetPheLeuSerMetArgGlu : 166 ||||||||||||||||||||||||||.!.:!!|||:!:|||||| ysThrCysMetSerTyrPheThrMetLeuMetSerLeuArgGlu 1233167 : AAACGTGCATGTCATACTTCACAATGCTGATGTCACTTAGAGAA : 1233124 vulgar: gi|805754636|ref|XP_012138785.1| 105 166 . KQ414851.1 1233381 1233123 - 200 M 44 132 5 0 2 I 0 71 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233124 1233381 200 - . gene_id 1 ; sequence gi|805754636|ref|XP_012138785.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233250 1233381 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233381 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233124 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233124 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233124 1233381 200 - . alignment_id 1 ; Query gi|805754636|ref|XP_012138785.1| ; Align 1233382 106 132 ; Align 1233175 150 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754636|ref|XP_012138785.1| PREDICTED: odorant receptor 4-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 177 Query range: 105 -> 166 Target range: 1228545 -> 1228287 106 : TyrAsnCysAsnTrpTyrGluValProIleLysPheGlnLysLeuLeuCysPheMe : 124 |||::!! !!..||||||:!!||| !! !|||||||||::!:!!:!!! !.!.|| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 125 : tIleValArgSerSerLysProCysIleLeuSerAlaGlyGlyLeuTyrAspMetA : 143 | !:!!|||:!! !|||||||||||||||!!!|||||||||||||||!!:|||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 144 : snMetGlnAsnTyrAlaIleAla{V} >>>> Target Intron 1 >>>> { : 151 |||||:!!|||!:!|||! !!.!{:} 75 bp { snMetGluAsnPheAlaAsnVal{L}++ +-{ 1228433 : ACATGGAGAACTTTGCAAACGTT{C}gt.........................at{ : 1228334 152 : al}LysThrCysMetSerTyrPheThrMetPheLeuSerMetArgGlu : 166 !!}|||||||||||||||||||||||||||.!.:!!|||.!.|||||| eu}LysThrCysMetSerTyrPheThrMetLeuMetSerPheArgGlu 1228333 : TC}AAAACGTGCATGTCGTACTTCACAATGCTGATGTCATTTAGGGAA : 1228288 vulgar: gi|805754636|ref|XP_012138785.1| 105 166 . KQ414851.1 1228545 1228287 - 177 M 45 135 S 0 1 5 0 2 I 0 71 3 0 2 S 1 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228288 1228545 177 - . gene_id 2 ; sequence gi|805754636|ref|XP_012138785.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1228410 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228410 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228408 1228409 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1228335 1228409 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1228335 1228336 . - . intron_id 0 ; splice_site "AT" KQ414851.1 exonerate:protein2genome:local cds 1228288 1228334 . - . KQ414851.1 exonerate:protein2genome:local exon 1228288 1228334 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228288 1228545 177 - . alignment_id 2 ; Query gi|805754636|ref|XP_012138785.1| ; Align 1228546 106 135 ; Align 1228333 152 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754636|ref|XP_012138785.1| PREDICTED: odorant receptor 4-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 174 Query range: 105 -> 166 Target range: 1242796 -> 1242521 106 : TyrAsnCysAsnTrpTyrGluValProIleLysPheGlnLysLeuLeuCysPheMe : 124 ||||||! ! ||||||:!!..!|||:!: !.!!||||||:!!||| !.!.:! TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIleVa 1242796 : TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATATAGT : 1242742 125 : tIleValArgSerSerLysProCysIleLeuSerAlaGlyGlyLeuTyrAspMetA : 143 : !:!!||||||.!!|||||||||! !||| !|||||||||||||||!!:|||| lGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluMetA 1242741 : ACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAATGA : 1242685 144 : snMetGlnAsnTyrAlaIle >>>> Target Intron 1 >>>> AlaValL : 152 ||!!::!!|||!:!!.! ! 92 bp ..! !!| snIleGluAsnPheGlySer++ ++ThrPheL 1242684 : ACATTGAGAATTTTGGATCAgt.........................agacTTTCA : 1242566 153 : ysThrCysMetSerTyrPheThrMetPheLeuSerMetArgGlu : 166 ||||||||!!:|||||||||||||||.!!||||||.!.!:!!!: ysThrCysIleSerTyrPheThrMetLeuLeuSerPheLysAsp 1242565 : AAACCTGCATATCGTACTTTACGATGCTCTTATCATTCAAAGAC : 1242522 vulgar: gi|805754636|ref|XP_012138785.1| 105 166 . KQ414851.1 1242796 1242521 - 174 M 44 132 5 0 2 I 0 88 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242522 1242796 174 - . gene_id 3 ; sequence gi|805754636|ref|XP_012138785.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1242665 1242796 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242796 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242522 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242522 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242522 1242796 174 - . alignment_id 3 ; Query gi|805754636|ref|XP_012138785.1| ; Align 1242797 106 132 ; Align 1242573 150 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754636|ref|XP_012138785.1| PREDICTED: odorant receptor 4-like isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 105 -> 149 Target range: 1222505 -> 1222373 106 : TyrAsnCysAsnTrpTyrGluValProIleLysPheGlnLysLeuLeuCysPheMe : 124 ||| !! !!!.|||||||||:!!|||:!!||| |||||||||:!!! ! || TyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTyrThrMe 1222505 : TACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTACACGAT : 1222451 125 : tIleValArgSerSerLysProCysIleLeuSerAlaGlyGlyLeuTyrAspMetA : 143 | !:!!||||||! !::!||||||||||||!!!|||||||||:!!:!!!!:|||| tGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisGluMetA 1222450 : GCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATGAGATGA : 1222394 144 : snMetGlnAsnTyrAlaIle : 149 ||!!::!!!:!!:!!.!||| snIleGluSerPheGlyIle 1222393 : ACATCGAGAGTTTCGGAATA : 1222374 vulgar: gi|805754636|ref|XP_012138785.1| 105 149 . KQ414851.1 1222505 1222373 - 132 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222374 1222505 132 - . gene_id 4 ; sequence gi|805754636|ref|XP_012138785.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1222374 1222505 . - . KQ414851.1 exonerate:protein2genome:local exon 1222374 1222505 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222374 1222505 132 - . alignment_id 4 ; Query gi|805754636|ref|XP_012138785.1| ; Align 1222506 106 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754639|ref|XP_012138789.1| PREDICTED: odorant receptor 4-like isoform X2 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 200 Query range: 101 -> 162 Target range: 1233381 -> 1233123 102 : TyrAsnCysAsnTrpTyrGluValProIleLysPheGlnLysLeuLeuCysPheMe : 120 |||::!! !!..||||||:!!|||||| !|||||||||::!:!!:!!! ! || TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMe 1233381 : TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGAT : 1233327 121 : tIleValArgSerSerLysProCysIleLeuSerAlaGlyGlyLeuTyrAspMetA : 139 | !:!!|||:!! !|||||||||:!!|||!!!|||||||||||||||!!:|||| tGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetA 1233326 : GCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGA : 1233270 140 : snMetGlnAsnTyrAlaIle >>>> Target Intron 1 >>>> AlaValL : 148 |||||:!!|||!:!|||! ! 75 bp .!! !!| snMetGluAsnPheAlaAsn++ ++ThrPheL 1233269 : ACATGGAGAACTTTGCAAACgt.........................agaCATTCA : 1233168 149 : ysThrCysMetSerTyrPheThrMetPheLeuSerMetArgGlu : 162 ||||||||||||||||||||||||||.!.:!!|||:!:|||||| ysThrCysMetSerTyrPheThrMetLeuMetSerLeuArgGlu 1233167 : AAACGTGCATGTCATACTTCACAATGCTGATGTCACTTAGAGAA : 1233124 vulgar: gi|805754639|ref|XP_012138789.1| 101 162 . KQ414851.1 1233381 1233123 - 200 M 44 132 5 0 2 I 0 71 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233124 1233381 200 - . gene_id 1 ; sequence gi|805754639|ref|XP_012138789.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233250 1233381 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233381 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233124 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233124 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233124 1233381 200 - . alignment_id 1 ; Query gi|805754639|ref|XP_012138789.1| ; Align 1233382 102 132 ; Align 1233175 146 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754639|ref|XP_012138789.1| PREDICTED: odorant receptor 4-like isoform X2 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 177 Query range: 101 -> 162 Target range: 1228545 -> 1228287 102 : TyrAsnCysAsnTrpTyrGluValProIleLysPheGlnLysLeuLeuCysPheMe : 120 |||::!! !!..||||||:!!||| !! !|||||||||::!:!!:!!! !.!.|| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 121 : tIleValArgSerSerLysProCysIleLeuSerAlaGlyGlyLeuTyrAspMetA : 139 | !:!!|||:!! !|||||||||||||||!!!|||||||||||||||!!:|||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 140 : snMetGlnAsnTyrAlaIleAla{V} >>>> Target Intron 1 >>>> { : 147 |||||:!!|||!:!|||! !!.!{:} 75 bp { snMetGluAsnPheAlaAsnVal{L}++ +-{ 1228433 : ACATGGAGAACTTTGCAAACGTT{C}gt.........................at{ : 1228334 148 : al}LysThrCysMetSerTyrPheThrMetPheLeuSerMetArgGlu : 162 !!}|||||||||||||||||||||||||||.!.:!!|||.!.|||||| eu}LysThrCysMetSerTyrPheThrMetLeuMetSerPheArgGlu 1228333 : TC}AAAACGTGCATGTCGTACTTCACAATGCTGATGTCATTTAGGGAA : 1228288 vulgar: gi|805754639|ref|XP_012138789.1| 101 162 . KQ414851.1 1228545 1228287 - 177 M 45 135 S 0 1 5 0 2 I 0 71 3 0 2 S 1 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228288 1228545 177 - . gene_id 2 ; sequence gi|805754639|ref|XP_012138789.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1228410 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228410 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228408 1228409 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1228335 1228409 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1228335 1228336 . - . intron_id 0 ; splice_site "AT" KQ414851.1 exonerate:protein2genome:local cds 1228288 1228334 . - . KQ414851.1 exonerate:protein2genome:local exon 1228288 1228334 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228288 1228545 177 - . alignment_id 2 ; Query gi|805754639|ref|XP_012138789.1| ; Align 1228546 102 135 ; Align 1228333 148 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754639|ref|XP_012138789.1| PREDICTED: odorant receptor 4-like isoform X2 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 174 Query range: 101 -> 162 Target range: 1242796 -> 1242521 102 : TyrAsnCysAsnTrpTyrGluValProIleLysPheGlnLysLeuLeuCysPheMe : 120 ||||||! ! ||||||:!!..!|||:!: !.!!||||||:!!||| !.!.:! TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIleVa 1242796 : TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATATAGT : 1242742 121 : tIleValArgSerSerLysProCysIleLeuSerAlaGlyGlyLeuTyrAspMetA : 139 : !:!!||||||.!!|||||||||! !||| !|||||||||||||||!!:|||| lGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluMetA 1242741 : ACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAATGA : 1242685 140 : snMetGlnAsnTyrAlaIle >>>> Target Intron 1 >>>> AlaValL : 148 ||!!::!!|||!:!!.! ! 92 bp ..! !!| snIleGluAsnPheGlySer++ ++ThrPheL 1242684 : ACATTGAGAATTTTGGATCAgt.........................agacTTTCA : 1242566 149 : ysThrCysMetSerTyrPheThrMetPheLeuSerMetArgGlu : 162 ||||||||!!:|||||||||||||||.!!||||||.!.!:!!!: ysThrCysIleSerTyrPheThrMetLeuLeuSerPheLysAsp 1242565 : AAACCTGCATATCGTACTTTACGATGCTCTTATCATTCAAAGAC : 1242522 vulgar: gi|805754639|ref|XP_012138789.1| 101 162 . KQ414851.1 1242796 1242521 - 174 M 44 132 5 0 2 I 0 88 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242522 1242796 174 - . gene_id 3 ; sequence gi|805754639|ref|XP_012138789.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1242665 1242796 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242796 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242522 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242522 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242522 1242796 174 - . alignment_id 3 ; Query gi|805754639|ref|XP_012138789.1| ; Align 1242797 102 132 ; Align 1242573 146 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754639|ref|XP_012138789.1| PREDICTED: odorant receptor 4-like isoform X2 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 101 -> 145 Target range: 1222505 -> 1222373 102 : TyrAsnCysAsnTrpTyrGluValProIleLysPheGlnLysLeuLeuCysPheMe : 120 ||| !! !!!.|||||||||:!!|||:!!||| |||||||||:!!! ! || TyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTyrThrMe 1222505 : TACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTACACGAT : 1222451 121 : tIleValArgSerSerLysProCysIleLeuSerAlaGlyGlyLeuTyrAspMetA : 139 | !:!!||||||! !::!||||||||||||!!!|||||||||:!!:!!!!:|||| tGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisGluMetA 1222450 : GCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATGAGATGA : 1222394 140 : snMetGlnAsnTyrAlaIle : 145 ||!!::!!!:!!:!!.!||| snIleGluSerPheGlyIle 1222393 : ACATCGAGAGTTTCGGAATA : 1222374 vulgar: gi|805754639|ref|XP_012138789.1| 101 145 . KQ414851.1 1222505 1222373 - 132 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222374 1222505 132 - . gene_id 4 ; sequence gi|805754639|ref|XP_012138789.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1222374 1222505 . - . KQ414851.1 exonerate:protein2genome:local exon 1222374 1222505 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222374 1222505 132 - . alignment_id 4 ; Query gi|805754639|ref|XP_012138789.1| ; Align 1222506 102 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383861634|ref|XP_003706290.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 10 -> 225 Target range: 284523 -> 285180 11 : TyrTyrIleLeuProAsnLysIleLeuCysSerMetIleGlyMetTrpProPheSerG : 30 ||| !:!!! ! !|||::: !!! !!.! !||||||:!:||||||.!!||| TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 31 : luGluArgSerThrCysArgAsnAlaPheSerCysPheArgLeuValPheSerValTh : 49 !!!!|||! ..!!!. ! !||| !!! ! !:!!.!!||| ! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 50 : rAlaValCysThrIlePheValPro<->GlyIleMetIleIleValValLysTrpGly : 67 ! !:!! !! !:!!!!.|||||| !.!:!: ! !:!::!!! !||| ||| eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 68 : AspLeuLysIleLeuThrGlyValGlyCysIleLeuThrThrLeuAlaGlnCysLeuP : 87 |||||| ! ! !! ! !:!! ! !! !|||!:! !! ! !..!... !. AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 88 : heLysThrIleTyrLeuValAlaArgLysGluArgSerHisArgLeuTyrLysGluLe : 106 !!||| ! ! !|||:!!:!!||| ! !:!! ! !!:!! ! |||!!::! leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 107 : uArgSerLeuTrpAspSerThrAspAspProThrGluMetGlnCysTyrGlnAspLeu : 125 !|||:!! !|||..! !||| !...! !!::::: ::: ::: :!! eArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMet 284813 : TCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTG : 284869 126 : AlaHisValAlaArgThr<->CysThrIleThrPheTyrSerCysGlyAlaLeuThrS : 144 ! !! !||||||! ! ! :!!:!:.!!.!!!:!!!!..!||| !:!! !| ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrS 284870 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATT : 284929 145 : erIleValPheIleIleSerAlaAlaLeuGluCysMetAsnValAspValSer<->As : 162 || !! !|||.!! !!!!.!!!.!:!! !! !..||| !..!..! ! erGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIl 284930 : CCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCAT : 284986 163 : nGlyThrAspSerIleArgProLeuProPheGluValTrpTyrGly<->IleAspVal : 180 !! !!.!!!:!!!:!:||| !!! ! !!||| !:!!!:: !||| :!!||| ! eAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 284987 : CGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCG : 285043 181 : SerGluSerProArgPheGluValValPheValCysGlnAlaLeuAlaSerThrIleC : 200 !! |||||| !||||||:!!||| !! |||..!||||||:!! !:!! ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValI 285044 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTA : 285103 201 : ysAlaValAlaIleCysSerLeuAspThrAlaCysValThrAlaIleLeuHisValCy : 219 ! !!.!! ! !.!! ! !!:! !..!!.!..! !:!!:!!|||||||| leTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCy 285104 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTG : 285160 220 : sGlyGlnPheLysLeuIle : 225 ||||||||||!:!:!!:!! sGlyGlnPheArgIleLeu 285161 : TGGACAATTTAGGATACTT : 285180 vulgar: gi|383861634|ref|XP_003706290.1| 10 225 . KQ414889.1 284523 285180 + 107 M 47 141 G 0 3 M 74 222 G 0 3 M 30 90 G 0 3 M 16 48 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 285180 107 + . gene_id 1 ; sequence gi|383861634|ref|XP_003706290.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284524 285180 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 285180 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284524 285180 107 + . alignment_id 1 ; Query gi|383861634|ref|XP_003706290.1| ; Align 284524 11 141 ; Align 284668 58 222 ; Align 284893 132 90 ; Align 284986 162 48 ; Align 285037 178 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759031|ref|XP_012150706.1| PREDICTED: odorant receptor 67c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 325 -> 376 Target range: 301883 -> 302036 326 : AspIleAlaAsnAlaValTyrAsnSerAsnTrpTyrAsnLeuProAlaLysAsnAlaL : 345 .!.|||!.!:::||| !|||.!.! !:!!|||||||||||||||||||||!..||| GlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaT 301884 : CAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCAT : 301941 346 : ysLeuLeuIleLeuIleIleCysArgSerLysAsnProLeuGlnIleThrAlaGlyGl : 364 ! !|||||||||:!!! ! ! !|||:!! !!|||! !:!!:!!||||||||| yrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGlyLy 301942 : ACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAA : 301998 365 : yPheCysSerPheThrLeuGluLeuTyrSerGlnVal : 376 !.!. !..!!!.:!!|||.!. !!:!|||...||| sIleIleAspLeuSerLeuAsnThrPheSerSerVal 301999 : AATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: gi|805759031|ref|XP_012150706.1| 325 376 . KQ414889.1 301883 302036 + 100 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301884 302036 100 + . gene_id 1 ; sequence gi|805759031|ref|XP_012150706.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301884 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301884 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301884 302036 100 + . alignment_id 1 ; Query gi|805759031|ref|XP_012150706.1| ; Align 301884 326 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383861632|ref|XP_003706289.1| PREDICTED: putative odorant receptor 85e [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 300 -> 394 Target range: 1708190 -> 1709243 301 : PheIleValTyrLeuThrAlaValMetIleGlnLeuMetPheTrpCysTrpProGl : 319 |||:!: !!:!!||||||!.! !:!! !||||||:!!.!.!:: !!:: ! ! PheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuMetPheThrTyrSerCy 1708191 : TTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGATGTTCACCTACAGCTG : 1708245 320 : yGluIleLeuIleGlnGluSerLeuGluValGlyTyrAlaValTyr<-><-><->< : 335 !!!: !||||||!:!|||||||||.!.|||!.! !!|||:!!||| sAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIleTyrAspCysSerT 1708246 : CGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATATACGACTGCTCGT : 1708302 336 : ->LeuAsnIleProTrpTyrAsnMetGluProAlaCysArgArgGlnLeuLeuLeu : 352 :!!:!!:!:||| ! !!!.. ! !! ! ! |||!:!.!.||| !!!! rpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAspLeuThrPhe 1708303 : GGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGACATTC : 1708356 353 : ValIleLeuArgSerGlnAsnValCysSerIleSerAlaLeuThrPheArgThrVa : 371 |||||| !||||||::! !|||!!!:!!!!!|||! ! !||| ! !!|| ValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePheProVa 1708357 : GTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGT : 1708413 372 : lCysIleHisSerLeuThrThr >>>> Target Intron 1 >>>> ValPh : 380 |! :!:.!.!!!! !|||:!! 759 bp :!!!! lSerLeuGluThrTyrThrSer++ ++IleLe 1708414 : GTCACTGGAAACGTACACTTCGgt.........................agATTTT : 1709199 381 : eAsnAlaAlaAlaSerTyrPheThrLeuLeuArgGlnMetGlu : 394 .!:!.!!|||||||||||||||||||||||||||:!!...||| uSerThrAlaAlaSerTyrPheThrLeuLeuArgLysGlnGlu 1709200 : AAGTACCGCAGCGTCATACTTCACACTGCTACGAAAACAAGAA : 1709243 vulgar: gi|383861632|ref|XP_003706289.1| 300 394 . KQ414915.1 1708190 1709243 + 109 M 34 102 G 0 12 M 44 132 5 0 2 I 0 755 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1708191 1709243 109 + . gene_id 1 ; sequence gi|383861632|ref|XP_003706289.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1708191 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708191 1708436 . + . insertions 12 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709243 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709243 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1708191 1709243 109 + . alignment_id 1 ; Query gi|383861632|ref|XP_003706289.1| ; Align 1708191 301 102 ; Align 1708305 335 132 ; Align 1709196 379 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 729 Query range: 66 -> 394 Target range: 1706483 -> 1709237 67 : AlaIleTyrThrGlyAsnAsnValMetThrIleSerMetValLeuLeuLysIlePh : 85 !.!:!!|||..! ! !|||:!!:!:|||:!:.!!!!: !|||!!!||||||!! ValValTyrValMetCysAsnIleLeuThrValGlyIleSerLeuPheLysIleLe 1706484 : GTTGTTTACGTAATGTGCAACATTCTAACAGTGGGCATAAGTTTGTTCAAGATCTT : 1706538 86 : eIleSerTyrIleHisArgLysLysLeuLeuArgLeuValIleTyrAlaLysThrA : 104 .:!!||| ! ::::::|||...|||...|||::: ||||||!:!|||| uValSerMetArgSerLysGluLysPheLeuGluLeuIleLysTyrAlaArgThrA 1706539 : GGTCTCGATGAGGagtaaggaaaaatttttggaattaattaaatacgcCAGAACGA : 1706595 105 : snPheTrpHisLeuAsnTyrGluProGluGluMetGluIleMetAspAsnCysArg : 122 |||||||||||! !:!!|||!!: !!:!!|||... !|||:!!:!!.!.|||!:! snPheTrpHisSerAspTyrAspSerGlnGluGlnMetIleValAsnGluCysLys 1706596 : ATTTCTGGCACTCGGATTATGACTCGCAGGAGCAAATGATTGTGAACGAGTGTAAA : 1706649 123 : ArgThrCysThrPheLeuIleCysAlaPheSerPheLeuThrGlnGlyThrValAl : 141 |||:!!||||||||||||||||||!.!|||!:!|||!!!.!!.!.|||||||||:! ArgSerCysThrPheLeuIleCysValPheAsnPhePheAlaAsnGlyThrValSe 1706650 : CGTTCTTGTACATTCCTCATATGCGTGTTTAATTTCTTCGCTAATGGGACAGTGTC : 1706706 142 : aGlyPheIleMetSerCysValVal{G} >>>> Target Intron 1 >>>> : 150 !|||!:!|||!!:!!! :!!|||{|} 266 bp rGlyTyrIleIleArgProIleVal{G}++ + 1706707 : TGGATACATAATCAGGCCAATTGTA{G}gt.........................a : 1706998 151 : {lu}AsnIleGlyArgAsnGluSerAspArgValPheProPheAsnValTrpLeu : 167 {||}!::||||||:::|||||||||||||||:!!.!! ! !!||| !!|||:!! +{lu}SerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIle 1706999 : g{AA}AgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATT : 1707050 168 : AspValProGluIleThrLeuThrProTyrPheGluIleIleSerAlaIleGlu : 186 ||| !!||| ! !|||:!!|||||||||!:!||||||:!!! !.!! :!! AspPhePro---ThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707051 : GACTTTCCG---ACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt : 1707104 187 : >>>> Target Intron 2 >>>> ValLeuAlaLeuCysHisValGlyValCy : 195 276 bp |||!!! !:!! :!!||| !!:!! ! ++ValPheIleValMetTyrValCysIleSe 1707105 : .........................agGTTTTTATCGTAATGTACGTTTGCATAAG : 1707407 196 : sTyrLeuCysPheAspAsnPheLeuCysLeuMetAsnLeuHisAlaAlaCysGlnP : 214 !|||||||||.!!|||||||||||||||:!!!!:|||||||||.!!||| !|||| rTyrLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnP 1707408 : CTACCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAAT : 1707464 215 : heArgIleLeuGlnHisArgLeuSerLysValTyrValIleHisGluLysGluLys : 232 ||||||||||||||:!!|||||||||!!.|||! !! ! !:!!|||::: !.. heArgIleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArg---Ser 1707465 : TTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGT---Agc : 1707515 233 : AspHisLeuThrValLysTyrTyrAspThrLeuArgGlyTyrPheLysGlnHisGl : 251 ||| :::::: ||| ..!!.!! ! !! !! !!:! :!! !:! AspLysIleSerLysLysThrProSerAsnSerAspGluCysTyrAlaLysPheLy 1707516 : gataaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAA : 1707572 252 : nThrLeuIleAlaTyrCysAspLysPheGluGluAlaPheSerValMetValLeuA : 270 !!.!! !||| ! ! !.!. !.!! !||| !! !!:!! !:!: ! !! sAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluV 1707573 : AAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGG : 1707629 271 : laGlnValLeuLeuPheSerLeuLeuIleCysLeuAspGlyPheLeuValLeuMet : 288 .! ! !|||!!! ! ! !! !:!:! ||| !.!!!!.|||:!!! !:!: alPheGlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeu 1707630 : TGTTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTC : 1707683 289 : AspAspAlaProAsnMet >>>> Target Intron 3 >>>> ArgArgVal : 297 |||! ! ! ||| 478 bp ||| :!! AspGlyTyrLeuValMet++ ++Arg---Leu 1707684 : GATGGATATTTGGTGATGgt.........................agCGC---CTT : 1708185 298 : IlePheAlaPheHisLeuMetCysCysIleCysGlnLeuLeuMetPheThrTyrSe : 316 ! !||| !|||||||||! ! ! |||:!:|||||||||||||||||||||||||| ThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuMetPheThrTyrSe 1708186 : ACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGATGTTCACCTACAG : 1708242 317 : rCysAspCysLeuIleArgGluSerLeuAspValAlaThrAlaValTyrAsnSerP : 335 ||||||||||||||||||||||||||||:!!||||||!.!|||:!!|||:!!!!! rCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIleTyrAspCysS 1708243 : CTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATATACGACTGCT : 1708299 336 : roTrpThrValValProHisAspAsnMetGlyLysMetValArgLysAspLeuVal : 353 !!|||! ! !:!!||| |||!.. |||::!|||:!!||||||||||||..! erTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAspLeuThr 1708300 : CGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGACA : 1708353 354 : LeuMetIleLeuArgSerArgValProCysCysIleThrAlaSerGlyPhePheVa : 372 !!!:!:||| !|||||||||||||||||||||:!!||||||!!!||||||||| PheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePhePr 1708354 : TTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCC : 1708410 373 : lValSerLeuGluThrTyrThrArg >>>> Target Intron 4 >>>> Va : 381 !||||||||||||||||||||| ! 759 bp :! oValSerLeuGluThrTyrThrSer++ ++Il 1708411 : TGTGTCACTGGAAACGTACACTTCGgt.........................agAT : 1709196 382 : lLeuSerThrAlaValSerTyrPheThrLeuLeuAsnGln : 394 !||||||||||||!.!||||||||||||||||||...:!! eLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgLys 1709197 : TTTAAGTACCGCAGCGTCATACTTCACACTGCTACGAAAA : 1709237 vulgar: gi|383857333|ref|XP_003704159.1| 66 394 . KQ414915.1 1706483 1709237 + 729 M 83 249 S 0 1 5 0 2 I 0 262 3 0 2 S 1 2 M 20 60 G 1 0 M 14 42 5 0 2 I 0 272 3 0 2 M 45 135 G 1 0 M 63 189 5 0 2 I 0 474 3 0 2 M 1 3 G 1 0 M 84 252 5 0 2 I 0 755 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1706484 1709237 729 + . gene_id 1 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1706484 1706733 . + . KQ414915.1 exonerate:protein2genome:local exon 1706484 1706733 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1706734 1706735 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1706734 1706999 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1706998 1706999 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707000 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707000 1707103 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708181 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1708180 1708181 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708182 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708182 1708436 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709237 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709237 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1706484 1709237 729 + . alignment_id 1 ; Query gi|383857333|ref|XP_003704159.1| ; Align 1706484 67 249 ; Align 1707002 151 60 ; Align 1707062 172 42 ; Align 1707380 186 135 ; Align 1707515 232 189 ; Align 1708182 295 3 ; Align 1708185 297 252 ; Align 1709196 381 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 520 Query range: 150 -> 394 Target range: 1688056 -> 1690079 151 : AsnIleGlyArgAsnGluSerAspArgValPheProPheAsnValTrpLeuAspVa : 169 |||!!:.!!||||||:!!||||||||||||.!!||||||!!.:!!|||:!!||| AsnMetSerArgAsnLysSerAspArgValLeuProPheLysMetTrpValAspTr 1688057 : AATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTGGGTCGATTG : 1688111 170 : lProGluIleThrLeuThrProTyrPheGluIleIleSerAlaIleGlu >>>> : 186 !||| :!!:!! !|||||||||!:!|||:!:!!:! !.!!.!!:!! pPro---LeuSerAspThrProTyrTyrGluLeuMetPheThrPheGln++ 1688112 : GCCG---CTATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAGgt..... : 1688161 187 : Target Intron 1 >>>> ValLeuAlaLeuCysHisValGlyValCysTyrL : 197 179 bp !.!|||..!:!!! !!!.:!!|||!.!..!|||: ++AlaLeuCysValTyrGlnIleGlyAlaAlaTyrI 1688162 : ....................agGCGCTGTGCGTGTATCAAATCGGCGCCGCCTATA : 1688371 198 : euCysPheAspAsnPheLeuCysLeuMetAsnLeuHisAlaAlaCysGlnPheArg : 215 !!|||! !|||!..|||!!!|||:!!:!!|||:!!|||!.! !|||||||||||| leCysSerAspThrPhePheCysMetLeuAsnMetHisValIleCysGlnPheArg 1688372 : TCTGCTCCGACACGTTTTTCTGCATGCTGAACATGCACGTGATCTGCCAGTTCCGT : 1688425 216 : IleLeuGlnHisArgLeuSerLysValTyr<->ValIleHisGluLys<->GluLy : 232 ||||||.!.:!!||||||! !!!.:!!!:: |||||| !!|||::! .!.! IleLeuAsnTyrArgLeuLeuAsnMetTrpProValIleAspGluArgThrAsnMe 1688426 : ATACTAAATTACAGACTGTTGAACATGTGGCCGGTCATCGACGAGCGAACGAACAT : 1688482 233 : sAspHisLeuThrValLysTyrTyrAspThrLeuArgGlyTyrPheLysGlnHisG : 251 ! !.!.! !||| !|||! !||| !! !|||! !! !! !.!!|||.!.|||| tThrGluTyrThrAsnLysCysTyrThrLysLeuIleAspCysIleLysAsnHisG 1688483 : GACCGAATACACGAACAAATGTTACACCAAGCTGATAGATTGCATCAAAAATCATC : 1688539 252 : lnThrLeuIleAlaTyrCysAspLysPheGluGluAlaPheSerValMetValLeu : 269 ||:!!||||||! !!:!|||! |||.!!|||.!.!.!!:!!!!:!!! :!!||| lnSerLeuIleGluPheCysValLysLeuGluAsnValTyrThrLeuThrIleLeu 1688540 : AGTCGTTGATCGAGTTCTGCGTGAAACTCGAGAACGTGTACACGTTGACTATACTC : 1688593 270 : AlaGlnValLeuLeuPheSerLeuLeuIleCysLeuAspGlyPheLeuValLeuMe : 288 !.!!!.:!!:!!:!!||||||||||||!!:|||!!!||| !!:! !|||:!!:! GlyHisIleValValPheSerLeuLeuMetCysPheAspThrTyrGluValValLe 1688594 : GGCCACATAGTGGTCTTCAGCTTGTTGATGTGCTTCGACACGTACGAGGTAGTTCT : 1688650 289 : t >>>> Target Intron 2 >>>> AspAspAlaProAsnMetArgArgVa : 297 ! 816 bp ! ! !.!|||!.!! !! !|||:! u++ ++AlaLysValProThrThrThrArgLe 1688651 : Ggt.........................agGCAAAGGTACCTACCACGACGCGCCT : 1689493 298 : lIlePheAlaPheHisLeuMetCysCysIleCysGlnLeuLeuMetPheThrTyrS : 316 !|||||| !||||||:!!!!: !! !!.!! !!..::::::...|||||||||| uIlePheLeuPheHisMetIleGlySerPheIleHisIleIlePhePheThrTyrS 1689494 : CATATTCTTATTCCACATGATCGGTAGCTTCATCCacataattttcttcacgtACA : 1689550 317 : erCysAspCysLeuIleArgGluSerLeuAspValAlaThrAlaValTyrAsnSer : 334 |||||! ! !!||||||..!||||||:!!|||:!!|||||||||..!||| .!! erCysGlyGlyLeuIleGluGluSerMetAspIleAlaThrAlaThrTyrAlaGly 1689551 : GTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCAACAGCAACGTATGCAGGA : 1689604 335 : ProTrpThrValValProHisAspAsnMetGlyLysMetValArgLysAspLeuVa : 353 !|||||||||:!!||| :!!!!.:!:|||||||||:!!||| !:!!:!! MetTrpThrValLeuProMetAsnLysValGlyLysMetIleArgGlyAsnMetLy 1689605 : ATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAATGATACGAGGAAATATGAA : 1689661 354 : lLeuMetIleLeuArgSerArgValProCysCysIleThrAlaSerGlyPhePheV : 372 !||||||! !:!!|||||| ! !||||||||||||||||||.!!||||||||| sLeuMetThrValArgSerLeuGlnProCysCysIleThrAlaGlyGlyPhePheP 1689662 : GTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAACTGCTGGTGGATTCTTTC : 1689718 373 : alValSerLeuGluThrTyrThrArg >>>> Target Intron 3 >>>> V : 381 !|||||||||:!!||| !||| ! 293 bp : roValSerLeuLysThrAlaThrAla++ ++L 1689719 : CTGTCTCCTTGAAAACTGCTACCGCGgt.........................agC : 1690038 382 : alLeuSerThrAlaValSerTyrPheThrLeuLeuAsnGln : 394 !!:!!|||:!!.!!:!!|||||||||||||||:!!!..:!! euMetSerSerThrMetSerTyrPheThrLeuMetArgGlu 1690039 : TAATGAGTTCCACAATGTCGTATTTCACGCTCATGAGAGAG : 1690079 vulgar: gi|383857333|ref|XP_003704159.1| 150 394 . KQ414915.1 1688056 1690079 + 520 M 20 60 G 1 0 M 14 42 5 0 2 I 0 175 3 0 2 M 40 120 G 0 3 M 5 15 G 0 3 M 58 174 5 0 2 I 0 812 3 0 2 M 92 276 5 0 2 I 0 289 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688057 1690079 520 + . gene_id 2 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688057 1688158 . + . KQ414915.1 exonerate:protein2genome:local exon 1688057 1688158 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1688159 1688160 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688159 1688337 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1688336 1688337 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1688338 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688338 1688652 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690079 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690079 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688057 1690079 520 + . alignment_id 2 ; Query gi|383857333|ref|XP_003704159.1| ; Align 1688057 151 60 ; Align 1688117 172 42 ; Align 1688338 186 120 ; Align 1688461 226 15 ; Align 1688479 231 174 ; Align 1689469 289 276 ; Align 1690038 381 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 380 Query range: 239 -> 392 Target range: 1702205 -> 1703644 240 : TyrAspThrLeuArgGlyTyrPheLysGlnHisGlnThrLeuIleAlaTyrCysAs : 258 ||| ! .!!!!!!:!..!! ! ! ::!|||||||||!.!! !|||.!!|||||| ! TyrLysAlaPheLysAsnCysValArgGlnHisGlnAsnHisIleThrTyrCysHi 1702206 : TATAAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCATATCACGTACTGTCA : 1702260 259 : pLysPheGluGluAlaPheSerValMetValLeuAlaGlnValLeuLeuPheSerL : 277 !!:!!!..!.||| !|||!!!|||!!:||||||!.!!!.:!!|||:!!||||||| sArgLeuAsnGluIlePheThrValIleValLeuGlyHisIleLeuValPheSerL 1702261 : CAGATTGAACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGCC : 1702317 278 : euLeuIleCysLeuAspGlyPheLeuValLeuMet >>>> Target Intron : 289 ||||||||||||||! !||||||! !||||||:!! 607 bp euLeuIleCysLeuValGlyPheGlnValLeuVal++ 1702318 : TTCTGATATGTCTGGTTGGATTCCAAGTGCTCGTGgt................... : 1702355 290 : 1 >>>> AspAspAlaProAsnMetArgArgValIlePheAlaPheHisLeuMet : 304 !!.! !! !||||||:!!! !|||!.!||||||:!!:!: -+ThrProValThrProAlaArgArgLeuThrPheValPheHisIleVal 1702356 : ......ggACACCTGTGACTCCAGCGAGGCGGCTTACTTTCGTATTTCACATAGTC : 1703005 305 : CysCysIleCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGl : 323 !! !!:!!||||||||||||:!:|||||||||||||||||| !!||||||..!|| GlySerLeuCysGlnLeuLeuLeuPheThrTyrSerCysAspGlyLeuIleGluGl 1703006 : GGTAGTCTATGCCAACTATTGCTATTTACCTATAGCTGCGACGGTCTGATAGAGGA : 1703062 324 : uSerLeuAspValAlaThrAlaValTyrAsnSerProTrpThrValValProHisA : 342 |||| !:!!:!!!.!||||||:!!||| !.!!||||||! ! !:!!||| | uSerThrAsnIleGlyThrAlaIleTyrLeuGlyProTrpIleHisLeuProMetA 1703063 : AAGTACGAACATCGGGACTGCGATATACCTCGGGCCTTGGATACATCTGCCAATGG : 1703119 343 : spAsnMetGlyLysMetValArgLysAspLeuValLeuMetIleLeuArgSerArg : 360 ||!!. |||!:!! !:!!|||!:!||||||..!:!!:!:|||:!!||||||||| spLysAlaGlyArgArgLeuArgArgAspLeuThrMetValIleValArgSerArg 1703120 : ACAAAGCCGGCAGAAGGTTGAGAAGAGACTTGACAATGGTCATCGTAAGATCGAGA : 1703173 361 : ValProCysCysIleThrAlaSerGlyPhePheValValSerLeuGluThrTyrTh : 379 ! !! !!|||:!!|||||||||||||||||| !|||||||||||||||! !|| LysSerSerCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrCysTh 1703174 : AAATCGAGCTGTTTAACTGCCAGCGGATTCTTTCCTGTTTCGCTGGAAACTTGTAC : 1703230 380 : rArg >>>> Target Intron 2 >>>> ValLeuSerThrAlaValSerTy : 388 |! ! 373 bp |||||||||||||||:!!||||| rThr++ ++ValLeuSerThrAlaMetSerTy 1703231 : CACGgt.........................agGTGCTCAGTACAGCGATGTCATA : 1703630 389 : rPheThrLeuLeu : 392 ||||||||||||| rPheThrLeuLeu 1703631 : CTTCACTTTATTA : 1703644 vulgar: gi|383857333|ref|XP_003704159.1| 239 392 . KQ414915.1 1702205 1703644 + 380 M 49 147 5 0 2 I 0 603 3 0 2 M 92 276 5 0 2 I 0 369 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702206 1703644 380 + . gene_id 3 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702206 1702352 . + . KQ414915.1 exonerate:protein2genome:local exon 1702206 1702352 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1702353 1702354 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1702353 1702959 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702958 1702959 . + . intron_id 0 ; splice_site "GG" KQ414915.1 exonerate:protein2genome:local cds 1702960 1703235 . + . KQ414915.1 exonerate:protein2genome:local exon 1702960 1703235 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1703236 1703237 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1703236 1703608 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1703607 1703608 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1703609 1703644 . + . KQ414915.1 exonerate:protein2genome:local exon 1703609 1703644 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702206 1703644 380 + . alignment_id 3 ; Query gi|383857333|ref|XP_003704159.1| ; Align 1702206 240 147 ; Align 1702960 289 276 ; Align 1703609 381 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 335 Query range: 294 -> 384 Target range: 1712387 -> 1712657 295 : ArgArgValIlePheAlaPheHisLeuMetCysCysIleCysGlnLeuLeuMetPh : 313 !:!!:!:::||||||...||||||||| ! ! |||!!:||||||||||||||||| LysGlnMetIlePheThrPheHisLeuAlaGlyCysMetCysGlnLeuLeuMetPh 1712388 : AAACAGAtgattttcacgtttcacctAGCGGGATGTATGTGTCAATTGCTGATGTT : 1712442 314 : eThrTyrSerCysAspCysLeuIleArgGluSerLeuAspValAlaThrAlaValT : 332 |||||||||||||||||||:!!|||! !|||||||||:!!|||.!! !||||||| eThrTyrSerCysAspCysIleIleThrGluSerLeuAsnValThrGluAlaValT 1712443 : TACGTACAGCTGCGATTGTATAATAACGGAAAGTTTGAACGTGACGGAAGCGGTGT : 1712499 333 : yrAsnSerProTrpThrValValProHisAspAsnMetGlyLysMetValArgLys : 350 ||:!!.!!|||||| !! !:!!||| ..!!..! |||!:!|||:!!|||||| yrAspGlyProTrpProArgLeuProMetSerThrArgGlyArgMetIleArgLys 1712500 : ACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGAAGAATGATAAGGAAG : 1712553 351 : AspLeuValLeuMetIleLeuArgSerArgValProCysCysIleThrAlaSerGl : 369 ||||||:!!|||:!:|||:!!|||||||||||||||||||||:!:||||||!!!|| AspLeuIleLeuValIleIleArgSerArgValProCysCysLeuThrAlaArgGl 1712554 : GATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTGCTTGACCGCCAGAGG : 1712610 370 : yPhePheValValSerLeuGluThrTyrThrArgValLeuSerThr : 384 ||||||||||:!!||||||||||||||||||!:!|||:!!..!:!! yPhePheValIleSerLeuGluThrTyrThrLysValIleAspSer 1712611 : ATTCTTCGTAATATCTTTGGAAACGTATACGAAGGTAATTGACTCT : 1712657 vulgar: gi|383857333|ref|XP_003704159.1| 294 384 . KQ414915.1 1712387 1712657 + 335 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712388 1712657 335 + . gene_id 4 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1712388 1712657 . + . KQ414915.1 exonerate:protein2genome:local exon 1712388 1712657 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712388 1712657 335 + . alignment_id 4 ; Query gi|383857333|ref|XP_003704159.1| ; Align 1712388 295 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 314 Query range: 233 -> 389 Target range: 1695037 -> 1695920 234 : HisLeuThrValLysTyrTyrAspThrLeuArgGlyTyrPheLysGlnHisGlnTh : 252 :!!!!!|||||| ! !||| !|||!:!.!!! ! ! :!! ! ||||||.! AsnPheThrValAspSerTyrLeuGlnLeuLysSerCysValGlnTyrHisGlnAl 1695038 : AATTTCACAGTCGATAGTTACTTACAATTGAAGAGTTGCGTGCAATACCATCAGGC : 1695092 253 : rLeuIleAlaTyrCysAspLysPheGluGluAlaPheSerValMetValLeuAlaG : 271 !|||! !!.!|||||| ! |||!!.|||.!. !||||||:!!:!:||||||!.!| aLeuThrGlyTyrCysLysLysLeuGluAsnIlePheSerLeuLeuValLeuGlyG 1695093 : ACTTACAGGCTATTGCAAAAAGTTGGAGAACATATTTTCGTTGCTTGTGCTTGGAC : 1695149 272 : lnValLeuLeuPheSerLeuLeuIleCysLeuAspGlyPheLeuValLeuMetAsp : 289 ||||||||!!!.!.:!!:!!:!!:!!||||||! |||!:!! !:!!!!!:!!! lnValLeuPheLeuAlaMetValLeuCysLeuValGlyTyrGlnLeuPheLeuVal 1695150 : AAGTGCTTTTCCTAGCCATGGTACTTTGCCTCGTGGGATATCAGCTATTTCTGGTA : 1695203 290 : AspAlaProAsnMet >>>> Target Intron 1 >>>> ArgArgValIle : 298 ..! ! !..!! 415 bp |||!.!||| ! SerLeuGluArgThr-- -+ArgAsnValGly 1695204 : AGTTTGGAACGTACTcg.........................cgAGAAACGTCGGA : 1695645 299 : PheAlaPheHisLeuMetCysCysIleCysGlnLeuLeuMetPheThrTyrSerCy : 317 !!.!.!.!!:!!||| !! !:!:|||||||||!!!||||||||||||||||| LeuValLeuAsnLeuAlaGlyThrLeuCysGlnLeuPheMetPheThrTyrSerCy 1695646 : TTGGTACTCAACCTGGCAGGCACTTTGTGTCAACTTTTTATGTTCACGTACAGTTG : 1695702 318 : sAspCysLeuIleArgGluSerLeuAspValAlaThrAlaValTyrAsnSerProT : 336 |||| !!|||! !|||||||||:!!||||||::!! !||||||!:! !!!|||| sAspGlyLeuThrArgGluSerMetAspValSerArgAlaValPheAlaArgProT 1695703 : CGATGGTTTGACAAGAGAGAGCATGGACGTTAGCAGAGCTGTATTTGCAAGACCGT : 1695759 337 : rpThrValValProHisAspAsnMetGlyLysMetValArgLysAspLeuValLeu : 354 ||.!! !:!!||| |||!..! ||||||! ||||||:!!..!:!!:!!:!! rpAlaAsnLeuProMetAspArgAsnGlyLysSerValArgGlnSerMetLeuMet 1695760 : GGGCAAATCTGCCAATGGATAGAAATGGGAAAAGTGTGCGACAAAGCATGCTAATG : 1695813 355 : MetIleLeuArgSerArgValProCysCysIleThrAlaSerGlyPhePheValVa : 373 :!!|||:!!||||||!.! ! !||||||:!!|||||||||||||||||| !|| ValIleMetArgSerAsnArgCysCysCysLeuThrAlaSerGlyPhePheProVa 1695814 : GTGATCATGAGGTCGAACAGGTGTTGCTGCTTAACAGCCAGCGGGTTCTTTCCAGT : 1695870 374 : lSerLeuGluThrTyrThrArgValLeuSerThrAlaValSerTyrPhe : 389 ||||||||||||||||||| !!|||:!!!:! !! !..!||| !||| lSerLeuGluThrTyrThrGlyValIleAsn***AspThrSerIlePhe 1695871 : TTCTCTCGAGACTTACACTGGGGTAATTAATTAAGATACGTCCATTTTT : 1695920 vulgar: gi|383857333|ref|XP_003704159.1| 233 389 . KQ414915.1 1695037 1695920 + 314 M 61 183 5 0 2 I 0 411 3 0 2 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1695038 1695920 314 + . gene_id 5 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1695038 1695220 . + . KQ414915.1 exonerate:protein2genome:local exon 1695038 1695220 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695221 1695222 . + . intron_id 1 ; splice_site "CG" KQ414915.1 exonerate:protein2genome:local intron 1695221 1695635 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1695634 1695635 . + . intron_id 0 ; splice_site "CG" KQ414915.1 exonerate:protein2genome:local cds 1695636 1695920 . + . KQ414915.1 exonerate:protein2genome:local exon 1695636 1695920 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1695038 1695920 314 + . alignment_id 5 ; Query gi|383857333|ref|XP_003704159.1| ; Align 1695038 234 183 ; Align 1695636 295 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 260 Query range: 148 -> 284 Target range: 1681719 -> 1682241 149 : ValGluAsnIleGlyArgAsnGluSerAspArgValPheProPheAsnValTrpLe : 167 ...||||||||||||!:!!:!!!:..!!!:|||:!!.!!|||||| !! ! :! ThrGluAsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgVa 1681720 : acagaGAACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGT : 1681774 168 : uAspValProGluIleThrLeuThrProTyrPheGluIleIleSerAlaIleGlu : 186 ! ! ! ! ! :!!||||||||||||:::||||||::: !.!|||||| lPheAsnLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu+ 1681775 : GTTTAACTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGg : 1681831 187 : >>>> Target Intron 1 >>>> ValLeuAlaLeuCysHisValGlyValC : 195 120 bp ..!|||:!!:!! ||| !|||:!!| + ++ThrLeuSerValValHisSerGlyIleC 1681832 : t.........................agACATTATCTGTGGTGCATTCGGGAATTT : 1681978 196 : ysTyrLeuCysPheAspAsnPheLeuCysLeuMetAsnLeuHisAlaAlaCysGln : 213 ||!:!! !|||||||||||||||||||||:!!:!!!:!:!!|||!.!!.! ! ||| ysPheCysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGln 1681979 : GTTTCTGTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAG : 1682032 214 : PheArgIleLeuGlnHisArgLeuSerLysValTyrValIleHisGluLysGluLy : 232 |||!:!|||||||||:!!!:!|||..!! ! |||:!: !||||||..... PheLysIleLeuGlnAsnLysLeuGlnThr------ValLeuSerGluLysSerSe 1682033 : TTTAAGATTTTACAAAACAAACTCCAAACA------GTATTGAGTGAGAAatcttc : 1682083 233 : sAspHisLeuThrValLysTyrTyrAspThrLeuArgGlyTyrPheLysGlnHisG : 251 . ... :::... ! ||| ! !!!!!:!! !! ! ! :!! ! |||! rLysGluLysSerAlaGlyLeuTyrLysGluPheLysGluCysValGlnTyrHisH 1682084 : gaaagaaaaatcagctGGACTGTATAAAGAGTTCAAGGAGTGCGTACAGTATCATC : 1682140 252 : lnThrLeuIleAlaTyrCysAspLysPheGluGluAlaPheSerValMetValLeu : 269 !. !|||:!!:!!||| :::|||...||| ..!|||!!!||| !:!!:!! isLeuLeuLeuSerTyrValGluLysLeuGluTyrValPheCysValProLeuMet 1682141 : ATTTGCTTCTTTCGtacgtggaaaaattggaatacgTATTTTGTGTCCCGTTGATG : 1682194 270 : AlaGlnValLeuLeuPheSerLeuLeuIleCysLeuAspGlyPhe : 284 !|||:!!|||:!!! !|||:!!:!!:!:|||:!!...|||||| IleGlnLeuLeuValSerSerIleValLeuCysValSerGlyPhe 1682195 : ATTCAATTGCTGGTGTCTAGCATAGTTCTGTGCGTCTCGGGGTTT : 1682241 vulgar: gi|383857333|ref|XP_003704159.1| 148 284 . KQ414915.1 1681719 1682241 + 260 M 37 111 5 0 2 I 0 116 3 0 2 M 38 114 G 2 0 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681720 1682241 260 + . gene_id 6 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681720 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681720 1681830 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682241 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682241 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local similarity 1681720 1682241 260 + . alignment_id 6 ; Query gi|383857333|ref|XP_003704159.1| ; Align 1681720 149 111 ; Align 1681951 186 114 ; Align 1682065 226 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 206 Query range: 65 -> 149 Target range: 1698547 -> 1698799 66 : GluAlaIleTyrThrGlyAsnAsnValMetThrIleSerMetValLeuLeuLysIl : 84 :!:..! !||||||!.! !|||:!!:!: !:!:! !|||||||||||||||:! AspCysAlaTyrThrAlaCysAsnIleLeuCysLeuIleMetValLeuLeuLysLe 1698548 : gACTGTGCTTACACCGCTTGTAACATTCTCTGCCTGATTATGGTACTGTTAAAGCT : 1698602 85 : ePheIleSerTyrIleHisArgLysLysLeuLeuArgLeuValIleTyrAlaLysT : 103 :|||:!! !!:!||||||||||||:!!!!!:!!..!|||::::::||| uPheValValPheIleHisArgLysGluPheIleGluLeuLeuValTyrMetTyrL 1698603 : GTTCGTTGTATTCATACACAGGAAAGAATTCATCGAACTgcttgtatatatgtaca : 1698659 104 : hrAsnPheTrpHisLeuAsnTyrGluProGluGluMetGluIleMetAspAsnCys : 121 |||||||||||||||||||||!!: !.!.|||:!: !:!::!!.!.:!!||| ysAsnPheTrpHisLeuAsnTyrAspCysAsnGluLeuLeuLeuLeuGlnAspCys 1698660 : aaaatttttggcACCTCAATTACGATTGCAACGAACTACTACTGCTGCAAGACTGC : 1698713 122 : ArgArgThrCysThrPheLeuIleCysAlaPheSerPheLeuThrGlnGlyThrVa : 140 ||||||! ! !!|||.!.! !||| !.!!!:!|||! !.!!|||||||||:! ArgArgIleSerThrIleCysIleThrLeuIleAsnPheCysAlaGlnGlyThrIl 1698714 : AGAAGAATTAGCACTATATGTATCACGTTGATTAACTTCTGTGCTCAAGGCACAAT : 1698770 141 : lAlaGlyPheIleMetSerCysValVal : 149 !!.!.!!!:!:!::!:!!! !:!!:!! eValSerTyrValLeuThrProIleIle 1698771 : TGTCAGCTACGTGCTAACACCTATTATA : 1698799 vulgar: gi|383857333|ref|XP_003704159.1| 65 149 . KQ414915.1 1698547 1698799 + 206 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1698548 1698799 206 + . gene_id 7 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1698548 1698799 . + . KQ414915.1 exonerate:protein2genome:local exon 1698548 1698799 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1698548 1698799 206 + . alignment_id 7 ; Query gi|383857333|ref|XP_003704159.1| ; Align 1698548 66 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 201 Query range: 147 -> 231 Target range: 1711228 -> 1712023 148 : ValValGluAsnIleGlyArgAsnGluSerAspArgValPheProPheAsnValTr : 166 ||| !! !|||||||||||||||||||||||||||:!!.!.||||||!!.:!!|| ValSerValAsnIleGlyArgAsnGluSerAspArgIleLeuProPheLysMetTr 1711229 : GTTTCAGTGAATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTG : 1711283 167 : pLeuAspValProGluIleThrLeuThrProTyrPheGluIleIleSerAlaIleG : 185 |:!!|||:!!||| ! !:!!:!!||||||||||||||||||... ...:!!: pIleAspIlePro---ThrSerMetThrProTyrPheGluIlePhePheThrLeuG 1711284 : GATTGATATACCG---ACATCGATGACACcgtattttgaaatattcttcaccTTAC : 1711337 186 : luValLeuAlaLeuCys >>>> Target Intron 1 >>>> HisValGlyV : 194 !!|||! !..!! !! 546 bp !!.:!!|||| lnValHisCysArgLeu-+ +-GlnIleGlyV 1711338 : AGGTACATTGTCGTTTAat.........................atCAAATTGGCG : 1711910 195 : alCysTyrLeuCysPheAspAsnPheLeuCysLeuMetAsnLeuHisAlaAlaCys : 212 || !!||| !|||||||||||| !!||||||:!!|||||||||||| !||| ! alSerTyrGlyCysPheAspAsnValLeuCysIleMetAsnLeuHisLeuAlaThr 1711911 : TGAGTTACGGTTGCTTCGACAACGTTCTATGCATCATGAACCTACACTTGGCCACT : 1711964 213 : GlnPheArgIleLeuGlnHisArgLeuSerLysValTyrValIleHisGluLysGl : 231 ||||||||||||||||||||||||||| !!!.:!! !!! !:!: ! ...|||:! GlnPheArgIleLeuGlnHisArgLeuValAsnIleAsnGlyLeuLysSerLysGl 1711965 : CAGTTTCGAATACTGCAACATAGACTGGTGAATATAAACGGTCTGAAGAGCAAACA : 1712021 232 : u : 231 ! n 1712022 : G : 1712023 vulgar: gi|383857333|ref|XP_003704159.1| 147 231 . KQ414915.1 1711228 1712023 + 201 M 23 69 G 1 0 M 19 57 5 0 2 I 0 542 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711229 1712023 201 + . gene_id 8 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1711229 1711354 . + . KQ414915.1 exonerate:protein2genome:local exon 1711229 1711354 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1711355 1711356 . + . intron_id 1 ; splice_site "AT" KQ414915.1 exonerate:protein2genome:local intron 1711355 1711900 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711899 1711900 . + . intron_id 0 ; splice_site "AT" KQ414915.1 exonerate:protein2genome:local cds 1711901 1712023 . + . KQ414915.1 exonerate:protein2genome:local exon 1711901 1712023 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711229 1712023 201 + . alignment_id 8 ; Query gi|383857333|ref|XP_003704159.1| ; Align 1711229 148 69 ; Align 1711298 172 57 ; Align 1711901 191 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 193 Query range: 184 -> 382 Target range: 1677575 -> 1678746 185 : GluValLeuAlaLeuCysHisValGlyValCysTyrLeuCysPheAspAsnPheLe : 203 ::!:!!!!! !! ! :!!:!! !:!!||||||:!! !!|||||| ! GlnIlePheLeuCysMetTyrLeuLeuLeuCysTyrIleGlyPheAspAlaSerAl 1677576 : caGATTTTCCTCTGCATGTACTTGTTGCTATGCTACATCGGTTTCGACGCGTCAGC : 1677630 204 : uCysLeuMetAsnLeuHisAlaAlaCysGlnPheArgIleLeuGlnHisArgLeuS : 222 !|||:!!:!!! :!!|||||||||... !!|||||||||||| !..! !|||| aCysValLeuIleIleHisAlaAlaAla***PheArgIleLeuGlyArgLeuLeuS 1677631 : GTGTGTGCTGATAATACACGCGGCCGCATAATTCAGAATACTTGGCCGACTGCTGT : 1677687 223 : erLysValTyrValIleHisGluLysGluLysAsp<->HisLeuThrValLysTyr : 239 || ! :!!!:!..! .!. ! !!:|||!!: !:!! ! !:!! erTyrIlePheThrGluGluLeuTyrAspLysGluIleSerIleGlnLysGlnMet 1677688 : CATATATTTTCACCGAGGAACTTTACGATAAAGAGATTAGCATACAGAAGCAAATG : 1677741 240 : TyrAspThrLeuArgGlyTyrPheLysGlnHisGlnThrLeuIleAlaTyrCysAs : 258 ! ... ...... !!.:::!:!||| ! !||||||! !||| !! SerGlnLysPheGluLysCysLeuArgArgHisTyrLeuLeuIleAspTyrValGl 1677742 : TCGcagaaattcgagaaatgcTTGCGTCGACACTATTTGCTCATTGACTACGTAGA : 1677798 259 : pLysPheGluGluAlaPheSerValMetValLeuAlaGlnValLeuLeuPheSerL : 277 ::::......... |||!.! !! :!!||| !|||:!!:!! !! |||| uGluLeuAsnAsnLeuPheLysTyrThrLeuLeuLeuGlnMetMetThrSerSerL 1677799 : GgaattgaataatttgttCAAATACACCCTTCTGTTACAGATGATGACCTCGAGTT : 1677855 278 : euLeuIleCysLeuAspGlyPheLeuValLeuMet >>>> Target Intron : 289 |||||||||||:!!..!|||!:! ! !|||:!! 580 bp euLeuIleCysMetSerGlyTyrGluCysLeuVal++ 1677856 : TGTTAATCTGTATGTCTGGTTACGAATGTTTAGTGgt................... : 1677893 290 : 1 >>>> AspAspAlaProAsnMetArgArgValIlePheAlaPheHisLeuMet : 304 !!.!.||| !! :!:!:!|||:!!:!!!:! !.!.:!!:!!:!: ++TyrGlnAlaSerLeuLeuLysArgMetValTyrIleMetTyrMetVal 1677894 : ......agTACCAGGCATCCTTGCTAAAACGCATGGTCTACATCATGTACATGGTT : 1678516 305 : CysCysIleCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGl : 323 ..!! :!:! :!!|||! !:!!.!...! !!! ||| |||! !! !.! AlaSerValSerGluLeuTrpLeuIleValArgThrValAspGluLeuThrThrHi 1678517 : GCCTCAGTGTCAGAATTATGGTTGATAGTCCGAACCGTAGACGAACTGACCACTCA : 1678573 324 : uSerLeuAspValAlaThrAlaValTyrAsnSerProTrpThrValValProHisA : 342 .||| !! :!!!.! !|||:!!|||::!||| !||| !|||::: sSerLysAlaIleGlyAspAlaMetTyrSerSerAspTrpGlyValIle---PheG 1678574 : TAGCAAAGCGATCGGCGATGCGATGTATTCCTCGGATTGGGGAGTgatc---tttg : 1678627 343 : spAsnMetGlyLysMetValArgLysAspLeuValLeuMetIleLeuArgSerArg : 360 ...::: ||| :::::: |||..! !|||:!!:!!|||||| lyLysLeuGluLysLysLeuLysPheAlaLeuThrThrMetValIleArgSer--- 1678628 : gaaaattggagaagaaattaaaatttgcctTGACGACGATGGTTATCAGATCG--- : 1678681 361 : ValProCysCysIleThrAlaSerGlyPhePheValValSerLeuGluThrTyrTh : 379 :!! ! ||| !! ! !:!!|||||||||!.!|||||| !||||||!:!|| IleGluThrCysSerMetLysAlaGlyPhePheAlaValSerSerGluThrPheTh 1678682 : ATCGAGACGTGTTCTATGAAAGCTGGCTTCTTTGCGGTCTCCAGTGAGACGTTTAC : 1678735 380 : rArgValLeu : 382 | !|||:!! rSerValIle 1678736 : ATCGGTAATT : 1678746 vulgar: gi|383857333|ref|XP_003704159.1| 184 382 . KQ414915.1 1677575 1678746 + 193 M 49 147 G 0 3 M 55 165 5 0 2 I 0 576 3 0 2 M 51 153 G 1 0 M 19 57 G 1 0 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1677576 1678746 193 + . gene_id 9 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1677576 1677890 . + . KQ414915.1 exonerate:protein2genome:local exon 1677576 1677890 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1677891 1677892 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1677891 1678470 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1678469 1678470 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1678471 1678746 . + . KQ414915.1 exonerate:protein2genome:local exon 1678471 1678746 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local similarity 1677576 1678746 193 + . alignment_id 9 ; Query gi|383857333|ref|XP_003704159.1| ; Align 1677576 185 147 ; Align 1677726 234 165 ; Align 1678471 289 153 ; Align 1678624 341 57 ; Align 1678681 361 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 184 -> 233 Target range: 1699632 -> 1699779 185 : GluValLeuAlaLeuCysHisValGlyValCysTyrLeuCysPheAspAsnPheLe : 203 :!!||||||:!!|||! !||||||||||||||||||:!!||||||||||||.!!|| GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1699633 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1699687 204 : uCysLeuMetAsnLeuHisAlaAlaCysGlnPheArgIleLeuGlnHisArgLeuS : 222 ||||||||||||||||||||||||| !||||||||||||||||||:!!||||||| uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1699688 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1699744 223 : erLysValTyrValIleHisGluLysGluLysAsp : 233 ||!!.:!! !! !! :!!..!|||:!! !||| erAsnLeuGlyAspThrAsnArgLysGlnValAsp 1699745 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGAT : 1699779 vulgar: gi|383857333|ref|XP_003704159.1| 184 233 . KQ414915.1 1699632 1699779 + 177 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699633 1699779 177 + . gene_id 10 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1699633 1699779 . + . KQ414915.1 exonerate:protein2genome:local exon 1699633 1699779 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699633 1699779 177 + . alignment_id 10 ; Query gi|383857333|ref|XP_003704159.1| ; Align 1699633 185 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 184 -> 233 Target range: 1702013 -> 1702160 185 : GluValLeuAlaLeuCysHisValGlyValCysTyrLeuCysPheAspAsnPheLe : 203 :!!||||||:!!|||! !||||||||||||||||||:!!||||||||||||.!!|| GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 204 : uCysLeuMetAsnLeuHisAlaAlaCysGlnPheArgIleLeuGlnHisArgLeuS : 222 ||||||||||||||||||||||||| !||||||||||||||||||:!!||||||| uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 223 : erLysValTyrValIleHisGluLysGluLysAsp : 233 ||!!.:!! !! !! :!!..!|||:!! !||| erAsnLeuGlyAspThrAsnArgLysGlnValAsp 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGAT : 1702160 vulgar: gi|383857333|ref|XP_003704159.1| 184 233 . KQ414915.1 1702013 1702160 + 177 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1702160 177 + . gene_id 11 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702014 1702160 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702160 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1702160 177 + . alignment_id 11 ; Query gi|383857333|ref|XP_003704159.1| ; Align 1702014 185 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 239 -> 301 Target range: 1707559 -> 1707745 240 : TyrAspThrLeuArgGlyTyrPheLysGlnHisGlnThrLeuIleAlaTyrCysAs : 258 |||! !! !!!!!:!..!! !.!!:!!|||||||||.!!||||||! !||||||:! TyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAs 1707560 : TACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAA : 1707614 259 : pLysPheGluGluAlaPheSerValMetValLeuAlaGlnValLeuLeuPheSerL : 277 !:!!.!!:!!|||!.!|||.!!:!!.!.|||||||||||||||||||||||||||| nGluLeuGlnGluValPheGlyLeuPheValLeuAlaGlnValLeuLeuPheSerL 1707615 : CGAACTTCAAGAGGTGTTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTT : 1707671 278 : euLeuIleCysLeuAspGlyPheLeuValLeuMetAspAspAlaProAsnMetArg : 295 |||||!!:||||||||||||!:!||||||:!!:!:..! ! !!!.!!:!:! euLeuMetCysLeuAspGlyTyrLeuValMetValSerArgTyrTyrLysIleGln 1707672 : TGTTAATGTGCCTCGATGGATATTTGGTGATGGTTAGTAGGTATTACAAAATTCAA : 1707725 296 : ArgValIlePheAlaPhe : 301 ||| |||... ||| ArgAspIleIlePhePhe 1707726 : CGCgatatcatatttttc : 1707745 vulgar: gi|383857333|ref|XP_003704159.1| 239 301 . KQ414915.1 1707559 1707745 + 154 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707560 1707745 154 + . gene_id 12 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1707560 1707745 . + . KQ414915.1 exonerate:protein2genome:local exon 1707560 1707745 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1707560 1707745 154 + . alignment_id 12 ; Query gi|383857333|ref|XP_003704159.1| ; Align 1707560 240 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 183 -> 233 Target range: 1694860 -> 1695010 184 : IleGluValLeuAlaLeuCysHisValGlyValCysTyrLeuCysPheAspAsnPh : 202 :!::!!..!|||..!:!!! !|||||||||:!!||||||:!!||||||||||||.! LeuGlnThrLeuCysValTyrHisValGlyIleCysTyrMetCysPheAspAsnIl 1694861 : CTGCAGACACTTTGCGTGTACCATGTCGGTATATGTTACATGTGCTTCGACAACAT : 1694915 203 : eLeuCysLeuMetAsnLeuHisAlaAlaCysGlnPheArgIleLeuGlnHisArgL : 221 !||| !!|||:!!|||||||||!.!||| !||||||||||||||||||:!!|||! eLeuSerLeuLeuAsnLeuHisValAlaThrGlnPheArgIleLeuGlnTyrArgP 1694916 : CCTCAGCCTTCTGAATCTTCACGTGGCCACTCAATTTCGTATCCTTCAATACCGAT : 1694972 222 : euSerLysValTyrValIleHisGluLysGluLysAsp : 233 !!! !!!.:!! ! !:!! !||||||:!!! !||| heMetAsnLeuSerAsnValIleGluLysGlnThrAsp 1694973 : TCATGAATTTGAGTAATGTAATTGAGAAGCAAACAGAC : 1695010 vulgar: gi|383857333|ref|XP_003704159.1| 183 233 . KQ414915.1 1694860 1695010 + 151 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694861 1695010 151 + . gene_id 13 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1694861 1695010 . + . KQ414915.1 exonerate:protein2genome:local exon 1694861 1695010 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694861 1695010 151 + . alignment_id 13 ; Query gi|383857333|ref|XP_003704159.1| ; Align 1694861 184 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 239 -> 290 Target range: 1699824 -> 1699977 240 : TyrAspThrLeuArgGlyTyrPheLysGlnHisGlnThrLeuIleAlaTyrCysAs : 258 ||| ! .!!!!!!:!..!! ! ! ::!|||||||||!.!! !|||.!!|||||| ! TyrLysAlaPheLysAsnCysValArgGlnHisGlnAsnHisIleThrTyrCysHi 1699825 : TATAAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCATATCACGTACTGTCA : 1699879 259 : pLysPheGluGluAlaPheSerValMetValLeuAlaGlnValLeuLeuPheSerL : 277 !!:!!!..!.||| !|||!!!|||!!:||||||!.!!!.:!!|||:!!||||||| sArgLeuAsnGluIlePheThrValIleValLeuGlyHisIleLeuValPheSerL 1699880 : CAGATTGAACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGCC : 1699936 278 : euLeuIleCysLeuAspGlyPheLeuValLeuMetAspAsp : 290 ||||||||||||||! !||||||! !||||||:!:!!::!! euLeuIleCysLeuValGlyPheGlnValLeuValGluAsn 1699937 : TTCTGATATGTCTGGTTGGATTCCAAGTGCTCGTAGAAAAC : 1699977 vulgar: gi|383857333|ref|XP_003704159.1| 239 290 . KQ414915.1 1699824 1699977 + 129 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699825 1699977 129 + . gene_id 14 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1699825 1699977 . + . KQ414915.1 exonerate:protein2genome:local exon 1699825 1699977 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699825 1699977 129 + . alignment_id 14 ; Query gi|383857333|ref|XP_003704159.1| ; Align 1699825 240 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857335|ref|XP_003704160.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 1182 Query range: 0 -> 401 Target range: 1692073 -> 1696257 1 : MetArgLeuLeuArgSerLysAspArgSerIleIleTrpThrCysPheLeuMetLy : 19 |||!.!|||:!!!:!|||||||||! !||||||:!!|||:!!! !||||||||||| MetHisLeuValGlnSerLysAspIleSerIleValTrpSerPhePheLeuMetLy 1692074 : ATGCATTTAGTGCAGAGTAAAGATATCTCGATCGTTTGGTCGTTCTTTTTGATGAA : 1692128 20 : sValIleGlyIleTrpIleAlaThrAsnArgAlaGluGlnIleArgArgLysLeuA : 38 |:!!:!!|||:!:|||:!!|||.!!:!!..!||||||||| !||||||!!.!!!| sIleValGlyLeuTrpLeuAlaAlaAspGluAlaGluGlnArgArgArgAsnPheA 1692129 : AATCGTAGGTCTGTGGCTAGCCGCCGACGAGGCTGAACAACGTCGGAGAAATTTCG : 1692185 39 : laLeuValTyrThrLeuMetAlaLeuSerIleAlaLeuGlyIleAlaLeuArgAsp : 56 |||||:!!|||||||||! |||:!!! !||||||! ! !!||||||:!!|||||| laLeuIleTyrThrLeuAsnAlaIlePheIleAlaSerCysIleAlaMetArgAsp 1692186 : CGCTGATTTACACGCTGAACGCGATTTTTATCGCTTCGTGTATAGCAATGAGAGAT : 1692239 57 : MetHisPheSerTrpGlyAsnPheAsn >>>> Target Intron 1 >>>> : 66 !!::!!!:!|||||||||||| ! ||| 1732 bp IleTyrTyrSerTrpGlyAsnValAsn++ ++ 1692240 : ATATACTATTCCTGGGGAAACGTGAACgt.........................ag : 1693999 67 : AspCysValTyrIleGlyCysAsnIleLeuTyrLeuMetIleGlyPhePheLysIl : 84 ||||||:!!|||:!!||||||||||||||||||||| !|||! !||||||||||| AspCysIleTyrValGlyCysAsnIleLeuTyrLeuAlaIleValPhePheLysIl 1694000 : GACTGCATTTACGTCGGGTGCAACATTTTATACCTAGCGATCGTTTTCTTCAAGAT : 1694055 85 : eAlaValLeuSerAlaHisLysLysAsnPheTyrAspLeuValValSerIleGluA : 103 | !||||||! ! !|||!:!! !.!.||||||! |||:!! !! !! :!!. eLeuValLeuTyrLysHisArgIleGluPheTyrGlyLeuIleArgPheThrGlnG 1694056 : CCTCGTTTTGTACAAGCACAGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAG : 1694112 104 : rgSerPheIleArgProSerAspAspIleThrGluGlnLysIleLeuMetGluCys : 121 .!!.!||| !.! !..! !!:!! ! !|||:!! !|||||| |||||| luLysPheTrpHisPheAspTyrAsnSerArgGluLysLeuIleLeuSerGluCys 1694113 : AGAAATTCTGGCATTTCGACTATAATTCACGGGAGAAGTTAATTTTATCCGAGTGC : 1694166 122 : LysSerValCysAspMetPheIleValPheIleThrPheCysValGlnGlyThrCy : 140 |||!.!:!!||| !:!:||||||||| !.!!!:!||||||..!||||||||||| LysLysIleCysThrValPheIleValAlaPheSerPheCysThrGlnGlyThrCy 1694167 : AAGAAGATATGTACCGTTTTCATCGTTGCCTTCAGCTTCTGTACTCAGGGCACGTG : 1694223 141 : sSerGlyTyrAlaValThrProLeuLeu{G} >>>> Target Intron 2 >> : 150 |:!!||||||!.!|||||||||:!!|||{!} 100 bp sAlaGlyTyrValValThrProIleLeu{A}++ 1694224 : TGCTGGTTACGTAGTGACACCTATTTTA{g}gt....................... : 1694256 151 : >> {lu}AsnIleGlyLysProGluMetGluArgMetLeuProPheAsnLeuTrp : 166 { !}|||:!!|||||| !:!! |||||||||||||||||||||:!!||| ++{la}AsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTrp 1694257 : ..ag{CA}AATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTGG : 1694401 167 : IleAspPheProThrGlyLysSerProTyrPheGluValLeuPheAlaIleGln : 185 :!!||||||||||||||| !|||||||||!:!|||||||||||| !|||||| ValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGln++ 1694402 : GTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGgt : 1694458 186 : >>>> Target Intron 3 >>>> MetLeuCysValTyrHisValAlaIleSe : 194 409 bp ! ||||||||||||||||||!.!|||!! ++ThrLeuCysValTyrHisValGlyIleCy 1694459 : .........................agACACTTTGCGTGTACCATGTCGGTATATG : 1694894 195 : rTyrPheCysPheAspAsnPheLeuCysLeuValCysLeuAsnIleThrGlyGlnP : 213 !|||.!.||||||||||||.!!||| !!|||:!! !|||:!!:!:.!! !|||| sTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGlnP 1694895 : TTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAAT : 1694951 214 : heArgIleLeuGlnHisArgLeuAlaSerLeuAsnGlyMet<-><->LysLysThr : 229 ||||||||||||||:!!|||!!! !!:!|||!:!..!:!: |||:!!||| heArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLysGlnThr 1694952 : TTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAACA : 1695005 230 : AspAspGluAspSerAspAlaTyrValSerAspAspAlaIleLysTyrArgThrLy : 248 |||! !...::: ::: !!!!:!! !.!!:!! ! ! ! !:! AspGlyArgGluLeuGluIleGlyTyrThrAsnPheThrValAspSerTyrLeuGl 1695006 : GACGGTcgagaattggaaattggtTACACAAATTTCACAGTCGATAGTTACTTACA : 1695062 249 : sLeuLysSerCysIleArgHisHisGlnThrLeuIleAsnTyrCysArgLysLeuG : 267 !||||||||||||:!:!:!:!!||||||.!!|||! !..!||||||!:!||||||| nLeuLysSerCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeuG 1695063 : ATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTGG : 1695119 268 : luAsnValPheThrLeuIleValLeuGlyGluValLeuPheLeuAlaMetLeuLeu : 285 |||||:!!|||:!!|||:!!|||||||||:!!||||||||||||||||||:!!||| luAsnIlePheSerLeuLeuValLeuGlyGlnValLeuPheLeuAlaMetValLeu 1695120 : AGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTACTT : 1695173 286 : CysCysLeuGlyPheGlnIlePheLeu >>>> Target Intron 4 >>>> : 295 ||| !:!!|||!:!|||:!!|||||| 415 bp CysLeuValGlyTyrGlnLeuPheLeu++ ++ 1695174 : TGCCTCGTGGGATATCAGCTATTTCTGgt.........................ag : 1695616 296 : MetSerSerProProAlaArgArgIleSerLeuValIleGlyMetMetGlyIleCy : 313 ! ..!|||||||||:!!|||!.!:!!.!!||||||:!!..!:!! |||! !! ThrAspSerProProSerArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrLe 1695617 : ACAGACTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTTT : 1695672 314 : sSerGlnLeuPheMetPheSerTyrCysTrpAspGlyLeuValArgGluSerValA : 332 !!!|||||||||||||||!!!||| !!!! |||||||||..!|||||||||:!!: uCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGluSerMetA 1695673 : GTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATGG : 1695729 333 : snValGlyGlnAlaAlaPheAlaGlyProTrpSerIlePheSerIleLysGluGly : 350 !!|||.!!::!|||!.!|||||| !!||||||:!!! !.!. !!!!: ! ..!..! spValSerArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAspArgAsn 1695730 : ACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAAT : 1695783 351 : GlyLysSerLeuArgSerAspValLeuIleIleIleMetArgSerAsnLysAlaCy : 369 |||||||||:!!|||..!..!:!!|||!!::!:|||||||||||||||!:!..!|| GlyLysSerValArgGlnSerMetLeuMetValIleMetArgSerAsnArgCysCy 1695784 : GGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTTG : 1695840 370 : sCysLeuThrAlaAlaGlyPhePheProValSerLeuGluThrCysThrAla >> : 387 |||||||||||||::!|||||||||||||||||||||||||||! !|||!.! sCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrGly++ 1695841 : CTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGgt.. : 1695896 388 : >> Target Intron 5 >>>> ValLeuSerThrAlaMetSerTyrPheThrL : 397 319 bp ||||||||||||||||||||||||||||||| ++ValLeuSerThrAlaMetSerTyrPheThrL 1695897 : .......................agGTCCTCAGCACTGCAATGTCATACTTTACAC : 1696243 398 : euLeuArgHisSer : 401 ||||||||!!.||| euLeuArgGlnSer 1696244 : TACTGAGACAATCG : 1696257 vulgar: gi|383857335|ref|XP_003704160.1| 0 401 . KQ414915.1 1692073 1696257 + 1182 M 65 195 5 0 2 I 0 1728 3 0 2 M 84 252 S 0 1 5 0 2 I 0 96 3 0 2 S 1 2 M 34 102 5 0 2 I 0 405 3 0 2 M 42 126 G 0 6 M 68 204 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1692074 1696257 1182 + . gene_id 1 ; sequence gi|383857335|ref|XP_003704160.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1692074 1692268 . + . KQ414915.1 exonerate:protein2genome:local exon 1692074 1692268 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1692269 1692270 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1692269 1694000 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1693999 1694000 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694001 1694253 . + . KQ414915.1 exonerate:protein2genome:local exon 1694001 1694253 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694254 1694255 . + . intron_id 2 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1694254 1694353 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1694352 1694353 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694354 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694354 1694457 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 5 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 5 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 4 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696257 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696257 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1692074 1696257 1182 + . alignment_id 1 ; Query gi|383857335|ref|XP_003704160.1| ; Align 1692074 1 195 ; Align 1694001 66 252 ; Align 1694356 151 102 ; Align 1694867 185 126 ; Align 1694999 227 204 ; Align 1695618 295 276 ; Align 1696213 387 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857335|ref|XP_003704160.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 531 Query range: 149 -> 405 Target range: 1706998 -> 1709252 150 : GluAsnIleGlyLysProGluMetGluArgMetLeuProPheAsnLeuTrpIleAs : 168 |||!::||||||||| ||| :!:|||!!:||| ! !!|||!!!|||||||| GluSerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAs 1706999 : GAAAgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGA : 1707053 169 : pPheProThrGlyLysSerProTyrPheGluValLeuPheAlaIleGln >>>> : 185 |||||||||| !! !!!!||||||!:!|||:!!||||||.!! ||| pPheProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707054 : CTTTCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt..... : 1707106 186 : Target Intron 1 >>>> MetLeuCysValTyrHisValAlaIleSerTyrP : 196 276 bp :!:!!! !||| :!!|||..!|||||||||. ++ValPheIleValMetTyrValCysIleSerTyrL 1707107 : ....................agGTTTTTATCGTAATGTACGTTTGCATAAGCTACC : 1707413 197 : heCysPheAspAsnPheLeuCysLeuValCysLeuAsnIleThrGlyGlnPheArg : 214 !!|||.!!|||||||||||||||:!!:!! !|||:!!! !.!! !||||||||| euCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArg 1707414 : TTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGA : 1707467 215 : IleLeuGlnHisArgLeuAlaSerLeuAsnGlyMetLysLysThrAspAspGluAs : 233 |||||||||:!!||||||:!!!:!:!! !||| !!.:!! !...|||::: IleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAspLysIl 1707468 : ATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaat : 1707524 234 : pSerAspAlaTyrValSerAspAspAlaIleLysTyrArgThrLysLeuLysSerC : 252 ||| !|||:!!...! ! ! ||| .!!|||!!!|||!:!| eSerLysLysThrProSerAsnSerAspGluCysTyr---AlaLysPheLysAsnC 1707525 : ttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTAC---GCTAAGTTCAAAAATT : 1707578 253 : ysIleArgHisHisGlnThrLeuIleAsnTyrCysArgLysLeuGluAsnValPhe : 270 |||||!:!!!.||||||.!!||||||.!.||||||!.!:!!|||:!!.!.|||||| ysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluValPhe 1707579 : GCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGGTGTTC : 1707632 271 : ThrLeuIleValLeuGlyGluValLeuPheLeuAlaMetLeuLeuCysCysLeuGl : 289 !|||.!!||||||!.!:!!||||||.!!!!!::!:!!|||:!!||| ! !|| GlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAspGl 1707633 : GGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGG : 1707689 290 : yPheGlnIlePheLeu >>>> Target Intron 2 >>>> MetSerSerPr : 298 |!:! :!: ! :!! 457 bp ..!!!!|| yTyr---LeuValMet++ ++GluAspThrPr 1707690 : ATAT---TTGGTGATGgt.........................agGAAGATACTCC : 1708170 299 : oProAlaArgArgIleSerLeuValIleGlyMetMetGlyIleCysSerGlnLeuP : 317 | ! !!:!|||:!!!!!!!!:!!.!! !:!:! !||| ! !!!||||||! oIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuL 1708171 : CATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGT : 1708227 318 : heMetPheSerTyrCysTrpAspGlyLeuValArgGluSerValAsnValGlyGln : 335 !.||||||!!!||| !!!! ||| !!|||:!!|||||||||:!!||||||!.!.!. euMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsn 1708228 : TGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAAT : 1708281 336 : AlaAlaPheAlaGlyProTrpSerIlePheSerIleLysGluGlyGlyLysSerLe : 354 ||| !!:!! ! !! !!|||! ! !!!. !!!!: ! ..!..!|||::!! !|| AlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLe 1708282 : GCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCT : 1708338 355 : uArgSerAspValLeuIleIleIleMetArgSerAsnLysAlaCysCysLeuThrA : 373 ||||!.!|||:!! !.!!:!!||| ||||||!.. ! !!||||||||||||| uArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrA 1708339 : GCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTG : 1708395 374 : laAlaGlyPhePheProValSerLeuGluThrCysThrAla >>>> Target I : 387 ||..!|||||||||||||||||||||||||||! !|||:!! 759 laCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708396 : CTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt............. : 1708439 388 : ntron 3 >>>> ValLeuSerThrAlaMetSerTyrPheThrLeuLeuArgHis : 400 bp :!!|||||||||||| !||||||||||||||||||||| ! ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgLys 1708440 : ............agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTACGAAAA : 1709235 401 : SerAlaProAspLeu : 405 ..!! ! !!!!::!! GlnGluAlaGluIle 1709236 : CAAGAAGCAGAAATA : 1709252 vulgar: gi|383857335|ref|XP_003704160.1| 149 405 . KQ414915.1 1706998 1709252 + 531 M 35 105 5 0 2 I 0 272 3 0 2 M 61 183 G 1 0 M 44 132 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1706999 1709252 531 + . gene_id 2 ; sequence gi|383857335|ref|XP_003704160.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1706999 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1706999 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709252 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709252 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1706999 1709252 531 + . alignment_id 2 ; Query gi|383857335|ref|XP_003704160.1| ; Align 1706999 150 105 ; Align 1707380 185 183 ; Align 1707563 247 132 ; Align 1707695 292 9 ; Align 1708161 295 276 ; Align 1709196 387 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857335|ref|XP_003704160.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 333 Query range: 243 -> 404 Target range: 1688499 -> 1690091 244 : LysTyrArgThrLysLeuLysSerCysIleArgHisHisGlnThrLeuIleAsnTy : 262 |||! ! !|||||||||! !..!||||||!:!:!!||||||:!!||||||.!.!: LysCysTyrThrLysLeuIleAspCysIleLysAsnHisGlnSerLeuIleGluPh 1688500 : AAATGTTACACCAAGCTGATAGATTGCATCAAAAATCATCAGTCGTTGATCGAGTT : 1688554 263 : rCysArgLysLeuGluAsnValPheThrLeuIleValLeuGlyGluValLeuPheL : 281 !||| !|||||||||||||||!:!||||||! !:!!||||||.!.:!!:!! !!! eCysValLysLeuGluAsnValTyrThrLeuThrIleLeuGlyHisIleValValP 1688555 : CTGCGTGAAACTCGAGAACGTGTACACGTTGACTATACTCGGCCACATAGTGGTCT : 1688611 282 : euAlaMetLeuLeuCysCysLeuGlyPheGlnIlePheLeu >>>> Target I : 295 !!::!:!!|||:!!|||! ! ! !!:!:!!:!! !!||| 816 heSerLeuLeuMetCysPheAspThrTyrGluValValLeu++ 1688612 : TCAGCTTGTTGATGTGCTTCGACACGTACGAGGTAGTTCTGgt............. : 1688655 296 : ntron 1 >>>> MetSerSerProProAlaArgArgIleSerLeuValIleGly : 308 bp !.! !||| !!.!!! !|||:!!! !!!!:!!.!! ! ++AlaLysValProThrThrThrArgLeuIlePheLeuPheHis 1688656 : ............agGCAAAGGTACCTACCACGACGCGCCTCATATTCTTATTCCAC : 1689508 309 : MetMetGlyIleCysSerGlnLeuPheMetPheSerTyrCysTrpAspGlyLeuVa : 327 |||!!:|||! !! !! !!..:::......|||:::||| !!!! ! !||||||:! MetIleGlySerPheIleHisIleIlePhePheThrTyrSerCysGlyGlyLeuIl 1689509 : ATGATCGGTAGCTTCATCCacataattttcttcacgtACAGTTGTGGTGGTTTGAT : 1689565 328 : lArgGluSerValAsnValGlyGlnAlaAlaPheAlaGlyProTrpSerIlePheS : 346 !..!||||||:!!:!!:!!!.! !|||.!!!:!|||||| !|||!!!:!!!!. eGluGluSerMetAspIleAlaThrAlaThrTyrAlaGlyMetTrpThrValLeuP 1689566 : AGAAGAGAGTATGGATATTGCAACAGCAACGTATGCAGGAATGTGGACGGTTTTGC : 1689622 347 : erIleLysGluGlyGlyLysSerLeuArgSerAspValLeuIleIleIleMetArg : 364 !!!!:!!.:!!! !||||||! !:!!|||.!!:!!:!! !:!!!!:! !:!:||| roMetAsnLysValGlyLysMetIleArgGlyAsnMetLysLeuMetThrValArg 1689623 : CAATGAATAAAGTTGGCAAAATGATACGAGGAAATATGAAGTTAATGACCGTAAGG : 1689676 365 : SerAsnLysAlaCysCysLeuThrAlaAlaGlyPhePheProValSerLeuGluTh : 383 ||| :!! !!||||||:!!||||||!.!|||||||||||||||||||||:!!|| SerLeuGlnProCysCysIleThrAlaGlyGlyPhePheProValSerLeuLysTh 1689677 : TCGTTGCAACCGTGTTGCATAACTGCTGGTGGATTCTTTCCTGTCTCCTTGAAAAC : 1689733 384 : rCysThrAla >>>> Target Intron 2 >>>> ValLeuSerThrAlaMe : 392 |..!|||||| 293 bp :!!:!!|||:!!.!!|| rAlaThrAla++ ++LeuMetSerSerThrMe 1689734 : TGCTACCGCGgt.........................agCTAATGAGTTCCACAAT : 1690053 393 : tSerTyrPheThrLeuLeuArgHisSerAlaProAsp : 404 ||||||||||||||||:!!|||.!.!!!:!! !!!!: tSerTyrPheThrLeuMetArgGluArgSerAlaGlu 1690054 : GTCGTATTTCACGCTCATGAGAGAGAGATCGGCTGAA : 1690091 vulgar: gi|383857335|ref|XP_003704160.1| 243 404 . KQ414915.1 1688499 1690091 + 333 M 51 153 5 0 2 I 0 812 3 0 2 M 92 276 5 0 2 I 0 289 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688500 1690091 333 + . gene_id 3 ; sequence gi|383857335|ref|XP_003704160.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688500 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688500 1688652 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690091 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690091 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688500 1690091 333 + . alignment_id 3 ; Query gi|383857335|ref|XP_003704160.1| ; Align 1688500 244 153 ; Align 1689469 295 276 ; Align 1690038 387 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857335|ref|XP_003704160.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 316 Query range: 145 -> 297 Target range: 1711222 -> 1712236 146 : ThrProLeuLeuGluAsnIleGlyLysProGluMetGluArgMetLeuProPheAs : 164 |||! !:!!! !! !|||||||||!:! !||| !!:|||!!:|||||||||!! ThrArgValSerValAsnIleGlyArgAsnGluSerAspArgIleLeuProPheLy 1711223 : ACTCGTGTTTCAGTGAATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAA : 1711277 165 : nLeuTrpIleAspPheProThrGlyLysSerProTyrPheGluValLeuPheAlaI : 183 .:!!|||||||||.!.||||||..!! !!!!||||||||||||:::...|||...: sMetTrpIleAspIleProThrSerMetThrProTyrPheGluIlePhePheThrL 1711278 : AATGTGGATTGATATACCGACATCGATGACACcgtattttgaaatattcttcaccT : 1711334 184 : leGln >>>> Target Intron 1 >>>> MetLeuCysValTyrHisValA : 192 !!||| 546 bp :!:|||! !!.!|||!!.:!!! euGln++ ++ValLeuSerAlaTyrGlnIleG 1711335 : TACAGgt.........................agGTTTTATCCGCGTATCAAATTG : 1711907 193 : laIleSerTyrPheCysPheAspAsnPheLeuCysLeuValCysLeuAsnIleThr : 210 .!:!:|||||| !|||||||||||| !!||||||:!!:!! !|||:!!:!:.!! lyValSerTyrGlyCysPheAspAsnValLeuCysIleMetAsnLeuHisLeuAla 1711908 : GCGTGAGTTACGGTTGCTTCGACAACGTTCTATGCATCATGAACCTACACTTGGCC : 1711961 211 : GlyGlnPheArgIleLeuGlnHisArgLeuAlaSerLeuAsnGlyMetLys<->Ly : 228 !|||||||||||||||||||||||||||!.!!:!:!!||||||:!!||| || ThrGlnPheArgIleLeuGlnHisArgLeuValAsnIleAsnGlyLeuLysSerLy 1711962 : ACTCAGTTTCGAATACTGCAACATAGACTGGTGAATATAAACGGTCTGAAGAGCAA : 1712018 229 : sThrAspAspGluAspSerAspAlaTyrValSerAspAsp<-><-><->AlaIleL : 244 | ! ||| ! .!!!!:.!!! :!!! !|||... ||| !! sGlnThrProGluLysGlyGluThrSerIleIleAspSerThrGluPheAlaAspA 1712019 : ACAGACACCGGAGAAAGGTGAAACGTCGATTATAGATTCGACAGAATTTGCGGATA : 1712075 245 : ysTyrArgThrLysLeuLysSerCysIleArgHisHisGlnThrLeuIleAsnTyr : 262 !.! ! ! ! !!!|||!!!|||:!!|||!!.||||||:!!|||!!: !!:! snSerTyrAspValPheLysArgCysValArgGlnHisGlnSerLeuMetAlaPhe 1712076 : ACTCTTACGACGTTTTCAAAAGATGCGTTCGTCAACATCAATCTCTGATGGCTTTC : 1712129 263 : CysArgLysLeuGluAsnValPheThrLeuIleValLeuGlyGluValLeuPheLe : 281 |||...|||||||||...:::|||!:!:!!|||:!!||||||:!!:!!||| ! !! CysGluLysLeuGluGluMetPheSerMetIleIleLeuGlyGlnLeuLeuValPh 1712130 : TgcgagaaactcgaagaaatgTTCAGTATGATTATACTGGGGCAATTGTTAGTGTT : 1712186 282 : uAlaMetLeuLeuCysCysLeuGlyPheGlnIlePheLeuMetSerSer : 297 !::!!!:!!!:!!||| ! !! !! !|||:!!.!!|||:!:|||||| eSerIlePheMetCysLeuAspValCysGlnValLeuLeuValSerSer 1712187 : CAGTATTTTTATGTGTCTCGACGTGTGCCAAGTACTTCTGGTTAGTTCA : 1712236 vulgar: gi|383857335|ref|XP_003704160.1| 145 297 . KQ414915.1 1711222 1712236 + 316 M 39 117 5 0 2 I 0 542 3 0 2 M 43 129 G 0 3 M 14 42 G 0 9 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711223 1712236 316 + . gene_id 4 ; sequence gi|383857335|ref|XP_003704160.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1711223 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711223 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712236 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712236 . + . insertions 12 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711223 1712236 316 + . alignment_id 4 ; Query gi|383857335|ref|XP_003704160.1| ; Align 1711223 146 117 ; Align 1711886 185 129 ; Align 1712018 228 42 ; Align 1712069 242 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857335|ref|XP_003704160.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 306 Query range: 147 -> 294 Target range: 1699025 -> 1699971 148 : LeuLeuGluAsnIleGlyLysProGluMetGluArgMetLeuProPheAsnLeuTr : 166 :!!||| |||||||||::: !... !!:|||:!!||||||||||||:!!|| IleLeuAlaAsnIleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTr 1699026 : ATTTTAgcaaatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTG : 1699080 167 : pIleAspPheProThrGlyLysSerProTyrPhe{Gl} >>>> Target Intr : 178 |:!!|||!!.||| !..! !|||||| !:!{||} 499 bp pValAspLeuProLeuSerValSerProThrTyr{Gl}-- 1699081 : GGTTGATTTGCCGCTGTCTGTGTCACCAACGTAC{GA}aa................ : 1699120 179 : on 1 >>>> {u}ValLeuPheAlaIleGlnMetLeuCysValTyrHisValAla : 192 {|}! !!!! ! ! !|||:!:|||! !:!!|||||||||!.! ++{u}AspPheValPheAlaGlnValLeuSerLeuTyrHisValGly 1699121 : .........ag{A}GATTTTGTGTTTGCACAGGTTCTGTCTTTGTACCACGTTGGT : 1699657 193 : IleSerTyrPheCysPheAspAsnPheLeuCysLeuValCysLeuAsnIleThrGl : 211 :!!!!!|||.!!||||||||||||.!!|||||||||:!! !|||:!! .!! ValCysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaTh 1699658 : GTATGTTACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTAC : 1699714 212 : yGlnPheArgIleLeuGlnHisArgLeuAlaSerLeu<-><->AsnGlyMetLysL : 228 !||||||||||||||||||:!!||||||:!!!:!||| !....!! !|||: rGlnPheArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysG 1699715 : TCAATTTCGTATACTGCAATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGC : 1699771 229 : ysThrAspAspGluAspSerAspAlaTyrValSerAspAspAlaIleLysTyrArg : 246 !!..!||||||.!.!!:|||..!||| !:!!||| ! !||| !!.! ! ! lnValAspAspAsnGluSerSerAlaAlaLeuSerArgPheAlaGluAsnCysTyr 1699772 : AAGTAGATGACAATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTAT : 1699825 247 : ThrLysLeuLysSerCysIleArgHisHisGlnThrLeuIleAsnTyrCysArgLy : 265 ! ! !!!!|||!:!|||:!!|||!!.||||||!.!! !|||!..||||||!.!!: LysAlaPheLysAsnCysValArgGlnHisGlnAsnHisIleThrTyrCysHisAr 1699826 : AAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCATATCACGTACTGTCACAG : 1699882 266 : sLeuGluAsnValPheThrLeuIleValLeuGlyGluValLeuPheLeuAlaMetL : 284 !|||.!..!.:!!||||||:!!||||||||||||.!.:!!||| !!!!!::!:!:| gLeuAsnGluIlePheThrValIleValLeuGlyHisIleLeuValPheSerLeuL 1699883 : ATTGAACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGCCTTC : 1699939 285 : euLeuCysCysLeuGlyPheGlnIlePheLeu : 294 ||:!!||| :!!|||||||||:!:.!!:!! euIleCysLeuValGlyPheGlnValLeuVal 1699940 : TGATATGTCTGGTTGGATTCCAAGTGCTCGTA : 1699971 vulgar: gi|383857335|ref|XP_003704160.1| 147 294 . KQ414915.1 1699025 1699971 + 306 M 30 90 S 0 2 5 0 2 I 0 495 3 0 2 S 1 1 M 45 135 G 0 6 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699026 1699971 306 + . gene_id 5 ; sequence gi|383857335|ref|XP_003704160.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1699026 1699117 . + . KQ414915.1 exonerate:protein2genome:local exon 1699026 1699117 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699118 1699119 . + . intron_id 1 ; splice_site "AA" KQ414915.1 exonerate:protein2genome:local intron 1699118 1699616 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699615 1699616 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699617 1699971 . + . KQ414915.1 exonerate:protein2genome:local exon 1699617 1699971 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699026 1699971 306 + . alignment_id 5 ; Query gi|383857335|ref|XP_003704160.1| ; Align 1699026 148 90 ; Align 1699618 179 135 ; Align 1699759 224 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857335|ref|XP_003704160.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 260 Query range: 183 -> 295 Target range: 1702013 -> 1702355 184 : GlnMetLeuCysValTyrHisValAlaIleSerTyrPheCysPheAspAsnPheLe : 202 |||:!:|||! !:!!|||||||||!.!:!!!!!|||.!!||||||||||||.!!|| GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 203 : uCysLeuValCysLeuAsnIleThrGlyGlnPheArgIleLeuGlnHisArgLeuA : 221 |||||||:!! !|||:!! .!! !||||||||||||||||||:!!||||||: uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 222 : laSerLeu<-><->AsnGlyMetLysLysThrAspAspGluAspSerAspAlaTyr : 237 !!!:!||| !....!! !|||:!!..!||||||.!.!!:|||..!||| ! erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1702179 238 : ValSerAspAspAlaIleLysTyrArgThrLysLeuLysSerCysIleArgHisHi : 256 :!!||| ! !||| !!.! ! !! ! !!!!|||!:!|||:!!|||!!.|| LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHi 1702180 : CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACA : 1702236 257 : sGlnThrLeuIleAsnTyrCysArgLysLeuGluAsnValPheThrLeuIleValL : 275 ||||!.!! !|||!..||||||!.!!:!|||.!..!.:!!||||||:!!||||||| sGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValL 1702237 : TCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTAC : 1702293 276 : euGlyGluValLeuPheLeuAlaMetLeuLeuCysCysLeuGlyPheGlnIlePhe : 293 |||||.!.:!!||| !!!!!::!:!:|||:!!||| :!!|||||||||:!:.!! euGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeu 1702294 : TCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTC : 1702347 294 : LeuMet : 295 :!!:!: ValVal 1702348 : GTGGTA : 1702355 vulgar: gi|383857335|ref|XP_003704160.1| 183 295 . KQ414915.1 1702013 1702355 + 260 M 40 120 G 0 6 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1702355 260 + . gene_id 6 ; sequence gi|383857335|ref|XP_003704160.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702014 1702355 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702355 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1702355 260 + . alignment_id 6 ; Query gi|383857335|ref|XP_003704160.1| ; Align 1702014 184 120 ; Align 1702140 224 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857335|ref|XP_003704160.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 254 Query range: 298 -> 393 Target range: 1702971 -> 1703256 299 : ProAlaArgArgIleSerLeuValIleGlyMetMetGlyIleCysSerGlnLeuPh : 317 ||||||||||||:!!!!!!!!|||.!! !!!::!:|||! ! !!!||||||!! ProAlaArgArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLe 1702972 : CCAGCGAGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATT : 1703026 318 : eMetPheSerTyrCysTrpAspGlyLeuValArgGluSerValAsnValGlyGlnA : 336 .:!:|||!!!||| !!!! |||||||||:!!..!||||||..!|||:!!||| | uLeuPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrA 1703027 : GCTATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTG : 1703083 337 : laAlaPheAlaGlyProTrpSerIlePheSerIleLysGluGlyGlyLysSerLeu : 354 || !!:! !|||||||||! ! !.!. !!!!: ! :!!!.!|||!:!!!!||| laIleTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeu 1703084 : CGATATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTG : 1703137 355 : ArgSerAspValLeuIleIleIleMetArgSerAsnLysAlaCysCysLeuThrAl : 373 |||!!!|||:!! !!!::!!|||:!:||||||!..|||:!! !!||||||||||| ArgArgAspLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAl 1703138 : AGAAGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGC : 1703194 374 : aAlaGlyPhePheProValSerLeuGluThrCysThrAlaValLeuSerThrAlaM : 392 |::!|||||||||||||||||||||||||||||||||.!!|||!!!!:! !:!!. aSerGlyPhePheProValSerLeuGluThrCysThrThrValPheAsnPheSerP 1703195 : CAGCGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATTTCTCAT : 1703251 393 : etSer : 393 !.||| heSer 1703252 : TCTCT : 1703256 vulgar: gi|383857335|ref|XP_003704160.1| 298 393 . KQ414915.1 1702971 1703256 + 254 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702972 1703256 254 + . gene_id 7 ; sequence gi|383857335|ref|XP_003704160.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702972 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1702972 1703256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702972 1703256 254 + . alignment_id 7 ; Query gi|383857335|ref|XP_003704160.1| ; Align 1702972 299 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857335|ref|XP_003704160.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 198 Query range: 149 -> 237 Target range: 1681722 -> 1682109 150 : GluAsnIleGlyLysProGluMetGluArgMetLeuProPheAsnLeuTrpIle<- : 168 ||||||||||||||| !!!: ||||||!!:||||||||| !!! ! :!: GluAsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPh 1681723 : gaGAACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTT : 1681777 169 : >AspPheProThrGlyLysSerProTyrPheGluValLeuPheAlaIleGln >> : 185 :!!!!.||||||..! !!!!||||||:::|||:::||||||!.!|||:!! eAsnLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681778 : TAACTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt.. : 1681833 186 : >> Target Intron 1 >>>> MetLeuCysValTyrHisValAlaIleSerT : 195 120 bp ! |||! !||| ||| !!.!|||!!!! ++ThrLeuSerValValHisSerGlyIleCysP 1681834 : .......................agACATTATCTGTGGTGCATTCGGGAATTTGTT : 1681981 196 : yrPheCysPheAspAsnPheLeuCysLeuValCysLeuAsnIleThrGlyGlnPhe : 213 :!! !|||||||||||||||||||||:!!:!! !!:!!:!!:!! !||||||||| heCysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPhe 1681982 : TCTGTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTT : 1682035 214 : ArgIleLeuGlnHisArgLeuAlaSerLeuAsnGlyMetLysLysThrAspAspGl : 232 !:!|||||||||:!!!:!||| !!!!:!! .!! !|||...::: ::::: LysIleLeuGlnAsnLysLeuGlnThrValLeuSerGluLysSerSerLysGluLy 1682036 : AAGATTTTACAAAACAAACTCCAAACAGTATTGAGTGAGAAatcttcgaaagaaaa : 1682092 233 : uAspSerAspAlaTyr : 237 :...:::! !||| sSerAlaGlyLeuTyr 1682093 : atcagctGGACTGTAT : 1682109 vulgar: gi|383857335|ref|XP_003704160.1| 149 237 . KQ414915.1 1681722 1682109 + 198 M 18 54 G 0 3 M 17 51 5 0 2 I 0 116 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681723 1682109 198 + . gene_id 8 ; sequence gi|383857335|ref|XP_003704160.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681723 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681723 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682109 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682109 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681723 1682109 198 + . alignment_id 8 ; Query gi|383857335|ref|XP_003704160.1| ; Align 1681723 150 54 ; Align 1681780 168 51 ; Align 1681951 185 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857335|ref|XP_003704160.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 65 -> 149 Target range: 1698547 -> 1698799 66 : AspCysValTyrIleGlyCysAsnIleLeuTyrLeuMetIleGlyPhePheLysIl : 84 ||||||!.!|||! !!.!||||||||||||! !|||!!:!!:! !.!.!!.|||:! AspCysAlaTyrThrAlaCysAsnIleLeuCysLeuIleMetValLeuLeuLysLe 1698548 : gACTGTGCTTACACCGCTTGTAACATTCTCTGCCTGATTATGGTACTGTTAAAGCT : 1698602 85 : eAlaValLeuSerAlaHisLysLysAsnPheTyrAspLeuValValSerIleGluA : 103 : !|||:!!! ! !|||!:!|||.!.||| !!!:|||:::||| ::: : uPheValValPheIleHisArgLysGluPheIleGluLeuLeuValTyrMetTyrL 1698603 : GTTCGTTGTATTCATACACAGGAAAGAATTCATCGAACTgcttgtatatatgtaca : 1698659 104 : rgSerPheIleArgProSerAspAspIleThrGluGlnLysIleLeuMetGluCys : 121 :::::||| ..!! !!:! !!||| !!.!|||! ! !:!:|||...!!:||| ysAsnPheTrpHisLeuAsnTyrAspCysAsnGluLeuLeuLeuLeuGlnAspCys 1698660 : aaaatttttggcACCTCAATTACGATTGCAACGAACTACTACTGCTGCAAGACTGC : 1698713 122 : LysSerValCysAspMetPheIleValPheIleThrPheCysValGlnGlyThrCy : 140 !:!!!!:!! !! !!!:! !|||..!!!.|||!.!||||||!.!||||||||| ArgArgIleSerThrIleCysIleThrLeuIleAsnPheCysAlaGlnGlyThrIl 1698714 : AGAAGAATTAGCACTATATGTATCACGTTGATTAACTTCTGTGCTCAAGGCACAAT : 1698770 141 : sSerGlyTyrAlaValThrProLeuLeu : 149 ! !.!!|||!.!:!!||||||:!!:!! eValSerTyrValLeuThrProIleIle 1698771 : TGTCAGCTACGTGCTAACACCTATTATA : 1698799 vulgar: gi|383857335|ref|XP_003704160.1| 65 149 . KQ414915.1 1698547 1698799 + 165 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1698548 1698799 165 + . gene_id 9 ; sequence gi|383857335|ref|XP_003704160.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1698548 1698799 . + . KQ414915.1 exonerate:protein2genome:local exon 1698548 1698799 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1698548 1698799 165 + . alignment_id 9 ; Query gi|383857335|ref|XP_003704160.1| ; Align 1698548 66 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857335|ref|XP_003704160.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 4 -> 64 Target range: 1697515 -> 1697695 5 : ArgSerLysAspArgSerIleIleTrpThrCysPheLeuMetLysValIleGlyIl : 23 !.!!!!|||||| !:!!:!::!! !|||! ||||||||||||:!!:!!|||:! HisThrLysAspPheAlaLeuLeuMetThrSerPheLeuMetLysIleValGlyLe 1697516 : CACACCAAAGATTTTGCTCTGTTAATGACGTCGTTTTTAATGAAGATCGTCGGTCT : 1697570 24 : eTrpIleAlaThrAsnArgAlaGluGlnIleArgArgLysLeuAlaLeuValTyrT : 42 !|||:!!|||! !:!!!!! !|||:!! !!:!|||::!! !.!!|||:!!|||| uTrpLeuAlaLysAspSerLysGluGluArgLysArgArgTyrThrLeuIleTyrT 1697571 : TTGGTTAGCGAAAGACAGCAAGGAGGAACGCAAGCGTCGGTACACTTTGATCTATA : 1697627 43 : hrLeuMetAlaLeuSerIleAlaLeuGlyIleAlaLeuArgAspMetHisPheSer : 60 ||:!!:!:|||:!!! !.!!!.!:!! !!:!: !!!!||||||.!.:!!!:!||| hrValValAlaIleLeuPheGlyValTrpValGlnPheArgAspPheTyrTyrSer 1697628 : CGGTGGTCGCGATTTTGTTTGGAGTGTGGGTGCAGTTCAGAGACTTCTATTACTCC : 1697681 61 : TrpGlyAsnPhe : 64 ||| !|||||| TrpProAsnPhe 1697682 : TGGCCGAATTTT : 1697695 vulgar: gi|383857335|ref|XP_003704160.1| 4 64 . KQ414915.1 1697515 1697695 + 145 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1697516 1697695 145 + . gene_id 10 ; sequence gi|383857335|ref|XP_003704160.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1697516 1697695 . + . KQ414915.1 exonerate:protein2genome:local exon 1697516 1697695 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1697516 1697695 145 + . alignment_id 10 ; Query gi|383857335|ref|XP_003704160.1| ; Align 1697516 5 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857335|ref|XP_003704160.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 300 -> 405 Target range: 1682556 -> 1683069 301 : ArgArgIleSerLeuValIleGlyMetMetGlyIleCysSerGlnLeuPheMetPh : 319 !:!|||:!:! !!!!:!!! ! !.!.:!:||| ! ! |||:::|||:::.. LysArgLeuLeuPheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePheLeuIl 1682557 : AAACGATTGTTGTTCCTAAATTACTTTCTCGGTGGAGTGATacagatatttttaat : 1682611 320 : eSerTyrCysTrpAspGlyLeuValArgGluSerValAsnValGlyGlnAlaAlaP : 338 .::: !!! :!!! !:!!:!!..!:!!|||! ! !:!!||| !||| !! eThrLeuAsnCysAsnAspIleMetGluGlnSerGlyAlaIleGlyThrAlaIleT 1682612 : aacccTAAATTGCAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAGCGATCT : 1682668 339 : heAlaGlyProTrpSerIlePheSerIleLysGluGlyGlyLysSerLeuArgSer : 356 :!::! !! !|||..! !::::: ... ..!!!!|||!.! yrSerCysAsnTrpGlu---ArgAsnValTyrAsnHisPheTyrGlnPheArgLys 1682669 : ACAGTTGTAATTGGGAG---AGGAAtgtttataatcatttttaccAGTTCAGAAAG : 1682719 357 : AspValLeuIleIleIleMetArgSerAsnLysAlaCysCysLeuThrAlaAlaGl : 375 |||:!!:!!|||:!!!!::!:|||:!!!!.::: !!|||! !:!!:!!|||||| AspMetMetIleValMetValArgAlaLysArgProCysTyrIleSerAlaAlaLy 1682720 : GATATGATGATTGTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGCAGCGAA : 1682776 376 : yPhePheProValSerLeuGluThrCysThrAla >>>> Target Intron 1 : 387 !|||||||||:!!|||||||||:!!! !||| 201 bp sPhePheProIleSerLeuGluSerPheThrLys++ 1682777 : ATTCTTTCCAATCTCCCTTGAATCGTTCACGAaggt.................... : 1682814 388 : >>>> ValLeuSerThrAlaMetSerTyrPheThrLeuLeuArgHisSerAlaP : 403 |||||||||.!!.!! ||||||!:!|||||||||||| ! !! ! ++ValLeuSerAlaThrAlaSerTyrTyrThrLeuLeuArgThrMetGluM 1682815 : .....agGTGTTAAGTGCAACAGCATCTTATTATACACTGCTGCGTACAATGGAAA : 1683061 404 : roAspLeu : 405 !|||:!! etAspVal 1683062 : TGGACGTC : 1683069 vulgar: gi|383857335|ref|XP_003704160.1| 300 405 . KQ414915.1 1682556 1683069 + 129 M 43 129 G 1 0 M 42 126 5 0 2 I 0 197 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682557 1683069 129 + . gene_id 11 ; sequence gi|383857335|ref|XP_003704160.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1682557 1682811 . + . KQ414915.1 exonerate:protein2genome:local exon 1682557 1682811 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1682812 1682813 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1682812 1683012 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1683011 1683012 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1683013 1683069 . + . KQ414915.1 exonerate:protein2genome:local exon 1683013 1683069 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1682557 1683069 129 + . alignment_id 11 ; Query gi|383857335|ref|XP_003704160.1| ; Align 1682557 301 129 ; Align 1682686 345 126 ; Align 1683013 387 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383861642|ref|XP_003706294.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 323 -> 415 Target range: 1712399 -> 1713321 324 : PheValSerTyrIleLeuSerMetThrIleGlnLeuLeuLeuTrpCysTrpProGl : 342 |||... :::::! !.!! ! ! !|||||||||:!!!:: !:: ! ! PheThrPheHisLeuAlaGlyCysMetCysGlnLeuLeuMetPheThrTyrSerCy 1712400 : ttcacgtttcacctAGCGGGATGTATGTGTCAATTGCTGATGTTTACGTACAGCTG : 1712454 343 : yGluIleLeuIleGluGluSerLeuHisIleGlyTyrAlaAlaTyr<-><-><->< : 358 !!!: !:!!||| !|||||||||:!!:!: ! ! |||!.!||| sAspCysIleIleThrGluSerLeuAsnValThrGluAlaValTyrAspGlyProT 1712455 : CGATTGTATAATAACGGAAAGTTTGAACGTGACGGAAGCGGTGTACGATGGACCAT : 1712511 359 : ->ValAsnValProTrpTyrAsnLeuProProPheTyrArgArgGlnLeuCysLeu : 375 !..!:!!||| ! !!.. ! ! !.!. |||!:!.!.||| ||| rpProArgLeuProMetSerThrArgGlyArgMetIleArgLysAspLeuIleLeu 1712512 : GGCCACGTTTGCCAATGAGCACGAGAGGAAGAATGATAAGGAAGGATTTGATACTC : 1712565 376 : IleValLeuArgSerGlnLysThrCysSerLeuSerAlaPheIlePheHisSerLe : 394 :!!:!!:!!||||||::! ! !!|||!!!|||!!!||| !||| ! !:! ValIleIleArgSerArgValProCysCysLeuThrAlaArgGlyPhePheValIl 1712566 : GTTATCATAAGATCGAGAGTACCTTGTTGCTTGACCGCCAGAGGATTCTTCGTAAT : 1712622 395 : uSerIleTyrThrLeuThrAsn >>>> Target Intron 1 >>>> ValLe : 403 !|||:!: ! |||! !|||!!. 634 bp |||:! eSerLeuGluThrTyrThrLys++ ++ValIl 1712623 : ATCTTTGGAAACGTATACGAAGgt.........................agGTTAT : 1713283 404 : uAsnThrAlaPheSerTyrPheAlaLeuLeuArgGln : 415 !!:!|||||| ! |||||||||.!!|||||||||||| eSerThrAlaValSerTyrPheThrLeuLeuArgGln 1713284 : AAGTACAGCAGTGTCGTACTTCACACTGTTAAGGCAA : 1713321 vulgar: gi|383861642|ref|XP_003706294.1| 323 415 . KQ414915.1 1712399 1713321 + 103 M 34 102 G 0 12 M 44 132 5 0 2 I 0 630 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712400 1713321 103 + . gene_id 1 ; sequence gi|383861642|ref|XP_003706294.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1712400 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712400 1712645 . + . insertions 12 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713321 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713321 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712400 1713321 103 + . alignment_id 1 ; Query gi|383861642|ref|XP_003706294.1| ; Align 1712400 324 102 ; Align 1712514 358 132 ; Align 1713280 402 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754623|ref|XP_012138758.1| PREDICTED: odorant receptor 9a-like isoform X1 [Megachile rotundata] Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 124 -> 213 Target range: 1626 -> 1890 125 : ValThrLeuLeuThrPheThrMetIlePheAsnTyrIleProLeuIleProProThrLeuAs : 145 |||!.! !:!!..!! !..!!!::!:||| ! ! |||:!!! !|||! !! !||||| ValAsnAlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAs 1627 : GTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGA : 1687 146 : pIleIleLeuProArgAsnGluSerArgProArgHisGlnLeuPheGlnValAsnTyrValP : 166 ||||:!!||||||!:!|||||||||||| ! ! ! :!!!:!! !!.! ||| !| pIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAla---TyrTyrP 1688 : CATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCC---TATTATT : 1747 167 : hePheAspAlaAspAspHisPheIlePheThrTyrLeuHisMetPheTrpAlaGlySerLeu : 186 || !|||! ! !! ! :!! !:!:!:!! ! ! !|||||| ! !.! ! !:!! heThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuVal 1748 : TCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTG : 1807 187 : ThrValPheValValValThrValAspSerLeuTyrMetLeuIleIleHisHisAlaSerGl : 207 ..! !!!:!||| ! !!.!! !|||!!! !|||!!:! !:!!:!:!!.|||!.!!!!|| ValPheTyrValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGl 1808 : GTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGG : 1870 208 : yLeuPheAspValCysGly : 213 ||||!!.! !|||! !||| yLeuLeuAlaValSerGly 1871 : ATTGTTGGCCGTGTCCGGg : 1890 vulgar: gi|805754623|ref|XP_012138758.1| 124 213 . KQ414921.1 1626 1890 + 108 M 38 114 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1627 1890 108 + . gene_id 1 ; sequence gi|805754623|ref|XP_012138758.1| ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1627 1890 . + . KQ414921.1 exonerate:protein2genome:local exon 1627 1890 . + . insertions 0 ; deletions 1 KQ414921.1 exonerate:protein2genome:local similarity 1627 1890 108 + . alignment_id 1 ; Query gi|805754623|ref|XP_012138758.1| ; Align 1627 125 114 ; Align 1741 164 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754615|ref|XP_012138734.1| PREDICTED: odorant receptor 24a-like [Megachile rotundata] Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 103 -> 212 Target range: 1578 -> 1902 104 : LeuGluAspLeuThrLysLeuAlaSerThrValAlaArgIleTyrArgThrCysIleLeuSe : 124 |||.!.|||! !||| ! ! !!!! !:!!!.!!:! !! ! !..! ! :!! LeuAsnAspGlnThrValTyrPheThrTyrIleValLysTyrSerIleValAsnAlaIleVa 1579 : TTAAACGACCAAACTGTTTATTTTACGTACATTGTCAAATATTCGATAGTGAACGCGATCGT : 1639 125 : rSerMetThrIlePheLeuSerValThrLeuLeuProSerValLeuAspValIleLeuProL : 145 !!!!:!:! !:!:|||:!!|||..! !!:!! !||| !:!!||||||:!!:!!|||||| lCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProL 1640 : TTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGA : 1702 146 : euAsnGluThrArgProArgGlnGlnLeuPheAsnValGluTyrLeuPhePheAspLysAsp : 165 !||||||:!!||| ! ! ! ! :!!!:! !.! |||! !||| !|||:!! !! ysAsnGluSerArgAspValAlaTyrIleTyrProAla---TyrTyrPheThrAspGluHis 1703 : AAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCC---TATTATTTCACCGACGAGCAT : 1759 166 : GluTyrTyrTyrSerValTyrLeuGlnLeuSerTrpSerThrPheValIleValMetValIl : 186 :!!||| !! ! !:!! ! !!!.:!!:!!! !! !.!.|||:!: !! ||| LysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTy 1760 : AAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTA : 1822 187 : eGlyPheValAspSerLeuTyrIleIleIleIleHisHisSerSerGlyLeuPheAlaValC : 207 ! ! ! !|||!!! !|||||| !:!!:!:!!.|||.!!!!!||||||!!.||||||! rPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValS 1823 : CTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGT : 1885 208 : ysGlyGluGlnIleLys : 212 !||| :::|||::: erGly***LysIleArg 1886 : CCGGgtaaaaaattcga : 1902 vulgar: gi|805754615|ref|XP_012138734.1| 103 212 . KQ414921.1 1578 1902 + 114 M 54 162 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1579 1902 114 + . gene_id 1 ; sequence gi|805754615|ref|XP_012138734.1| ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1579 1902 . + . KQ414921.1 exonerate:protein2genome:local exon 1579 1902 . + . insertions 0 ; deletions 1 KQ414921.1 exonerate:protein2genome:local similarity 1579 1902 114 + . alignment_id 1 ; Query gi|805754615|ref|XP_012138734.1| ; Align 1579 104 162 ; Align 1741 159 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754623|ref|XP_012138758.1| PREDICTED: odorant receptor 9a-like isoform X1 [Megachile rotundata] Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 124 -> 213 Target range: 202 -> 466 125 : ValThrLeuLeuThrPheThrMetIlePheAsnTyrIleProLeuIleProProThrLeuAspI : 146 |||!.! !:!!..!! !..!!!::!:||| ! ! |||:!!! !|||! !! !||||||| ValAsnAlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspI 203 : GTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACA : 266 147 : leIleLeuProArgAsnGluSerArgProArgHisGlnLeuPheGlnValAsnTyrValPhePh : 167 ||:!!||||||!:!|||||||||||| ! ! ! :!!!:!! !!.! ||| !||| leLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAla---TyrTyrPheTh 267 : TTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCC---TATTATTTCAC : 326 168 : eAspAlaAspAspHisPheIlePheThrTyrLeuHisMetPheTrpAlaGlySerLeuThrVal : 188 !|||! ! !! ! :!! !:!:!:!! ! ! !|||||| ! !.! ! !:!!..! !! rAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPhe 327 : CGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTT : 389 189 : PheValValValThrValAspSerLeuTyrMetLeuIleIleHisHisAlaSerGlyLeuPheA : 210 !:!||| ! !!.!! !|||!!! !|||!!:! !:!!:!:!!.|||!.!!!!||||||!!.! TyrValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuA 390 : TACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGG : 455 211 : spValCysGly : 213 !|||! !||| laValSerGly 456 : CCGTGTCCGGg : 466 vulgar: gi|805754623|ref|XP_012138758.1| 124 213 . LHQN01023902.1 202 466 + 108 M 38 114 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 203 466 108 + . gene_id 1 ; sequence gi|805754623|ref|XP_012138758.1| ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 203 466 . + . LHQN01023902.1 exonerate:protein2genome:local exon 203 466 . + . insertions 0 ; deletions 1 LHQN01023902.1 exonerate:protein2genome:local similarity 203 466 108 + . alignment_id 1 ; Query gi|805754623|ref|XP_012138758.1| ; Align 203 125 114 ; Align 317 164 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754615|ref|XP_012138734.1| PREDICTED: odorant receptor 24a-like [Megachile rotundata] Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 103 -> 212 Target range: 154 -> 478 104 : LeuGluAspLeuThrLysLeuAlaSerThrValAlaArgIleTyrArgThrCysIleLeuSerS : 125 |||.!.|||! !||| ! ! !!!! !:!!!.!!:! !! ! !..! ! :!! !! LeuAsnAspGlnThrValTyrPheThrTyrIleValLysTyrSerIleValAsnAlaIleValC 155 : TTAAACGACCAAACTGTTTATTTTACGTACATTGTCAAATATTCGATAGTGAACGCGATCGTTT : 218 126 : erMetThrIlePheLeuSerValThrLeuLeuProSerValLeuAspValIleLeuProLeuAs : 146 !!:!:! !:!:|||:!!|||..! !!:!! !||| !:!!||||||:!!:!!|||||| !|| ysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProLysAs 219 : GTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAAAA : 281 147 : nGluThrArgProArgGlnGlnLeuPheAsnValGluTyrLeuPhePheAspLysAspGluTyr : 167 ||||:!!||| ! ! ! ! :!!!:! !.! |||! !||| !|||:!! !!:!!||| nGluSerArgAspValAlaTyrIleTyrProAla---TyrTyrPheThrAspGluHisLysTyr 282 : CGAGTCACGAGACGTAGCGTACATTTACCCGGCC---TATTATTTCACCGACGAGCATAAGTAC : 341 168 : TyrTyrSerValTyrLeuGlnLeuSerTrpSerThrPheValIleValMetValIleGlyPheV : 189 !! ! !:!! ! !!!.:!!:!!! !! !.!.|||:!: !! ||| ! ! ! AspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrPheAlaC 342 : GACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTT : 407 190 : alAspSerLeuTyrIleIleIleIleHisHisSerSerGlyLeuPheAlaValCysGlyGluGl : 210 !|||!!! !|||||| !:!!:!:!!.|||.!!!!!||||||!!.||||||! !||| :: ysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly***Ly 408 : GTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaa : 470 211 : nIleLys : 212 :|||::: sIleArg 471 : aattcga : 478 vulgar: gi|805754615|ref|XP_012138734.1| 103 212 . LHQN01023902.1 154 478 + 114 M 54 162 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 155 478 114 + . gene_id 1 ; sequence gi|805754615|ref|XP_012138734.1| ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 155 478 . + . LHQN01023902.1 exonerate:protein2genome:local exon 155 478 . + . insertions 0 ; deletions 1 LHQN01023902.1 exonerate:protein2genome:local similarity 155 478 114 + . alignment_id 1 ; Query gi|805754615|ref|XP_012138734.1| ; Align 155 104 162 ; Align 317 159 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754615|ref|XP_012138734.1| PREDICTED: odorant receptor 24a-like [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 126 -> 208 Target range: 4999 -> 5242 127 : ThrIlePheLeuSerValThrLeuLeuProSerValLeuAspValIleLeuProLeuAsnGl : 147 .!!:!!|||:!!!!!:!! !!!!!:!! !! !!:!!||||||:!!:!!:!!||||||||||| AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGl 5000 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGA : 5060 148 : uThrArgProArgGlnGlnLeuPheAsnValGluTyrLeuPhePheAspLysAspGluTyrT : 168 ||||||| !!||| ! :!!!:! !.! |||! !||| !!|||:!!|||:!!|||: uThrArgAlaArgLeuPheValTyrProAla---TyrTyrPheValAspGluAspLysTyrH 5061 : GACGCGAGCACGGTTGTTCGTCTATCCAGCT---TACTATTTCGTCGACGAGGACAAATATC : 5120 169 : yrTyrSerValTyrLeuGlnLeuSerTrpSerThrPheValIleValMetValIleGlyPhe : 188 !!|||! !:!! !!!.:!!! ! !..! ! :!!:!!:!! |||.!! !! ! isTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 5121 : ATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 5180 189 : ValAspSerLeuTyrIleIleIleIleHisHisSerSerGlyLeuPheAlaValCysGly : 208 !|||:!! !|||:!: ! !:!:!!.|||:!!!!!||||||!!.|||:!!...||| CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5181 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5242 vulgar: gi|805754615|ref|XP_012138734.1| 126 208 . LHQN01025741.1 4999 5242 + 124 M 31 93 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5000 5242 124 + . gene_id 1 ; sequence gi|805754615|ref|XP_012138734.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5000 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5000 5242 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 5000 5242 124 + . alignment_id 1 ; Query gi|805754615|ref|XP_012138734.1| ; Align 5000 127 93 ; Align 5093 159 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754623|ref|XP_012138758.1| PREDICTED: odorant receptor 9a-like isoform X1 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 122 -> 213 Target range: 1561 -> 1831 123 : TyrArgValThrLeuLeuThrPheThrMetIlePheAsnTyrIleProLeuIleProProTh : 143 !:!! !|||!.! !||| !! ! !:!:||||||!.!! :!: !!:!!! |||! !.. PheThrValAsnGlyLeuPheCysTyrValIlePheThrSerValAlaIleThrProArgVa 1562 : TTCACAGTAAACGGACTGTTTTGCTACGTTATATTCACCTCAGTGGCGATTACGCCTCGTGT : 1622 144 : rLeuAspIleIleLeuProArgAsnGluSerArgProArgHisGlnLeuPheGlnValAsnT : 164 !||||||:!!|||! !|||!:!|||||||||||| ! ! !! :!!!:!! !.! | lLeuAspLeuIleSerProLysAsnGluSerArgGlyValAspPheIleTyrProAla---T 1623 : TCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTCATTTATCCTGCA---T : 1682 165 : yrValPhePheAspAlaAspAspHisPheIlePheThrTyrLeuHisMetPheTrpAlaGly : 184 || ! !.!!|||! !!!:!!:|||!:! !.!! ! !||||||.!!!! !.! ! yrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHisMetLeuCysValIle 1683 : ACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCACATGCTCTGCGTGATA : 1742 185 : SerLeuThrValPheValValValThrValAspSerLeuTyrMetLeuIleIleHisHisAl : 205 !!!:!!..! !!|||||| !:!!:!! !|||!!!:!!|||||| !|||:!:!!.||||| ThrValValPhePheValTyrIleSerCysAspThrIleTyrMetAsnIleValGlnHisAl 1743 : ACTGTAGTGTTTTTCGTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGC : 1805 206 : aSerGlyLeuPheAspValCysGly : 213 |!!!||||||.!.:!!|||! !||| aCysGlyLeuLeuAsnValSerGly 1806 : GTGCGGATTACTGAACGTCTCTGGG : 1831 vulgar: gi|805754623|ref|XP_012138758.1| 122 213 . LHQN01025741.1 1561 1831 + 129 M 40 120 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1562 1831 129 + . gene_id 1 ; sequence gi|805754623|ref|XP_012138758.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1562 1831 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1562 1831 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 1562 1831 129 + . alignment_id 1 ; Query gi|805754623|ref|XP_012138758.1| ; Align 1562 123 120 ; Align 1682 164 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754623|ref|XP_012138758.1| PREDICTED: odorant receptor 9a-like isoform X1 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 132 -> 213 Target range: 5002 -> 5242 133 : IlePheAsnTyrIleProLeuIleProProThrLeuAspIleIleLeuProArgAsnGluSe : 153 :!!|||! ! !:!:|||!!!:!: !!|||! !|||||||||:!!:!!||| !||||||!! LeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluTh 5003 : CTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGAC : 5063 154 : rArgProArgHisGlnLeuPheGlnValAsnTyrValPhePheAspAlaAspAspHisPheI : 174 !||| !!||| :!!!:!! !!.! ||| !||| !!|||! !||| ! :!! ! rArgAlaArgLeuPheValTyrProAla---TyrTyrPheValAspGluAspLysTyrHisT 5064 : GCGAGCACGGTTGTTCGTCTATCCAGCT---TACTATTTCGTCGACGAGGACAAATATCATT : 5123 175 : lePheThrTyrLeuHisMetPheTrpAlaGlySerLeuThrValPheValValValThrVal : 194 !!!.! ! !||||||!:! !.!! ! !:!! !:!!! !||| !! !.!! ! yrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCys 5124 : ACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGC : 5183 195 : AspSerLeuTyrMetLeuIleIleHisHisAlaSerGlyLeuPheAspValCysGly : 213 |||:!! !|||:!!! ! !:!:!!.||||||!!!||||||!!.! !:!!...||| AspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5184 : GATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5242 vulgar: gi|805754623|ref|XP_012138758.1| 132 213 . LHQN01025741.1 5002 5242 + 112 M 30 90 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5003 5242 112 + . gene_id 2 ; sequence gi|805754623|ref|XP_012138758.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5003 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5003 5242 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 5003 5242 112 + . alignment_id 2 ; Query gi|805754623|ref|XP_012138758.1| ; Align 5003 133 90 ; Align 5093 164 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754615|ref|XP_012138734.1| PREDICTED: odorant receptor 24a-like [Megachile rotundata] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 126 -> 208 Target range: 5663 -> 5420 127 : ThrIlePheLeuSerValThrLeuLeuProSerValLeuAspValIleLeuProLeuAsnGl : 147 .!!:!!|||:!!!!!:!! !!!!!:!! !! !!:!!||||||:!!:!!:!!||||||||||| AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGl 5663 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGA : 5603 148 : uThrArgProArgGlnGlnLeuPheAsnValGluTyrLeuPhePheAspLysAspGluTyrT : 168 ||||||| !!||| ! :!!!:! !.! |||! !||| !!|||:!!|||:!!||| uThrArgAlaArgLeuPheValTyrProAla---TyrTyrPheValAspGluAspLysTyrA 5602 : GACGCGAGCACGGTTGTTCGTCTATCCAGCT---TACTATTTCGTCGACGAGGACAAATATC : 5543 169 : yrTyrSerValTyrLeuGlnLeuSerTrpSerThrPheValIleValMetValIleGlyPhe : 188 !|||! !:!! !!!.:!!! ! !..! ! :!!:!!:!! |||.!! !! ! rgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 5542 : GTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 5483 189 : ValAspSerLeuTyrIleIleIleIleHisHisSerSerGlyLeuPheAlaValCysGly : 208 !|||:!! !|||:!: ! !:!:!!.|||:!!!!!||||||!!.|||:!!...||| CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5482 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5421 vulgar: gi|805754615|ref|XP_012138734.1| 126 208 . LHQN01028732.1 5663 5420 - 120 M 31 93 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5663 120 - . gene_id 1 ; sequence gi|805754615|ref|XP_012138734.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5663 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5663 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5663 120 - . alignment_id 1 ; Query gi|805754615|ref|XP_012138734.1| ; Align 5664 127 93 ; Align 5571 159 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754623|ref|XP_012138758.1| PREDICTED: odorant receptor 9a-like isoform X1 [Megachile rotundata] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 123 -> 213 Target range: 5687 -> 5420 124 : ArgValThrLeuLeuThrPheThrMetIlePheAsnTyrIleProLeuIleProProThrLe : 144 !:!||| !:!!! ! !! !.!! :!!|||! ! !:!:|||!!!:!: !!|||! !|| LysValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLe 5687 : AAAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCT : 5627 145 : uAspIleIleLeuProArgAsnGluSerArgProArgHisGlnLeuPheGlnValAsnTyrV : 165 |||||||:!!:!!||| !||||||!!!||| !!||| :!!!:!! !!.! ||| uAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAla---TyrT 5626 : GGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCT---TACT : 5567 166 : alPhePheAspAlaAspAspHisPheIlePheThrTyrLeuHisMetPheTrpAlaGlySer : 185 !||| !!|||! !||| ! :!! ! !!!.! ! !||||||!:! !.!! ! ! yrPheValAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValVal 5566 : ATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTA : 5507 186 : LeuThrValPheValValValThrValAspSerLeuTyrMetLeuIleIleHisHisAlaSe : 206 :!! !:!!! !||| !! !.!! !|||:!! !|||:!!! ! !:!:!!.||||||!! MetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCy 5506 : ATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTG : 5444 207 : rGlyLeuPheAspValCysGly : 213 !||||||!!.! !:!!...||| sGlyLeuLeuAlaIleAlaGly 5443 : CGGATTGTTGGCCATTGCAGGG : 5421 vulgar: gi|805754623|ref|XP_012138758.1| 123 213 . LHQN01028732.1 5687 5420 - 110 M 39 117 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5687 110 - . gene_id 1 ; sequence gi|805754623|ref|XP_012138758.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5687 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5687 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5687 110 - . alignment_id 1 ; Query gi|805754623|ref|XP_012138758.1| ; Align 5688 124 117 ; Align 5571 164 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: LHQN01036086.1 Habropoda laboriosa contig36086, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 87 -> 151 Target range: 0 -> 192 88 : TyrIleHisArgLysLysLeuLeuArgLeuValIleTyrAlaLysThrAsnPheTrpHisLeuA : 109 |||! ||||||! !:!!!!!! ! !!|||:!!! !:!.!!:!! !!!.|||||||||!!!| TyrLysHisArgIleGluPheTyrGlyLeuIleArgPheThrGlnGluLysPheTrpHisPheA 1 : TACAAGCACAGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAGAGAAATTCTGGCATTTCA : 64 110 : snTyrGluProGluGluMetGluIleMetAspAsnCysArgArgThrCysThrPheLeuIleCy : 130 |||||.!. !!..!|||! ! !|||:!:..!.!.|||!:!!:!! !|||||| !!!!!||| snTyrAsnSerArgGluLysLeuIleLeuSerGluCysLysLysIleCysThrValPheIleVa 65 : ACTATAATTCACGGGAGAAGTTAATTTTATCCGAGTGCAAGAAGATATGTACCGTTTTCATCGT : 127 131 : sAlaPheSerPheLeuThrGlnGlyThrValAlaGlyPheIleMetSerCysValValGluAsn : 151 !||||||||||||! !|||||||||||| !||||||!:!:!!:!!!!! !:!!:!! ||| lAlaPheSerPheCysThrGlnGlyThrCysAlaGlyTyrValValThrProIleLeuGlyAsn 128 : TGCCTTCAGCTTCTGTACACAGGGCACGTGTGCTGGTTACGTAGTGACACCTATTTTAggtaat : 190 vulgar: gi|383857333|ref|XP_003704159.1| 87 151 . LHQN01036086.1 0 192 + 153 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01036086.1 exonerate:protein2genome:local gene 1 192 153 + . gene_id 1 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation . LHQN01036086.1 exonerate:protein2genome:local cds 1 192 . + . LHQN01036086.1 exonerate:protein2genome:local exon 1 192 . + . insertions 0 ; deletions 0 LHQN01036086.1 exonerate:protein2genome:local similarity 1 192 153 + . alignment_id 1 ; Query gi|383857333|ref|XP_003704159.1| ; Align 1 88 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857335|ref|XP_003704160.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: LHQN01036086.1 Habropoda laboriosa contig36086, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 89 -> 151 Target range: 6 -> 192 90 : HisLysLysAsnPheTyrAspLeuValValSerIleGluArgSerPheIleArgProSerAspA : 111 |||!:!! !.!.||||||! |||:!! !! !! :!!..!!.!||| !.! !!:! !!: HisArgIleGluPheTyrGlyLeuIleArgPheThrGlnGluLysPheTrpHisPheAsnTyrA 7 : CACAGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAGAGAAATTCTGGCATTTCAACTATA : 70 112 : spIleThrGluGlnLysIleLeuMetGluCysLysSerValCysAspMetPheIleValPheIl : 132 !! ! !|||:!! !|||||| |||||||||!.!:!!||| !:!:||||||||| !.! snSerArgGluLysLeuIleLeuSerGluCysLysLysIleCysThrValPheIleValAlaPh 71 : ATTCACGGGAGAAGTTAATTTTATCCGAGTGCAAGAAGATATGTACCGTTTTCATCGTTGCCTT : 133 133 : eThrPheCysValGlnGlyThrCysSerGlyTyrAlaValThrProLeuLeuGluAsn : 151 !!:!||||||..!||||||||||||:!!||||||!.!|||||||||:!!||| ||| eSerPheCysThrGlnGlyThrCysAlaGlyTyrValValThrProIleLeuGlyAsn 134 : CAGCTTCTGTACACAGGGCACGTGTGCTGGTTACGTAGTGACACCTATTTTAggtaat : 192 vulgar: gi|383857335|ref|XP_003704160.1| 89 151 . LHQN01036086.1 6 192 + 152 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01036086.1 exonerate:protein2genome:local gene 7 192 152 + . gene_id 1 ; sequence gi|383857335|ref|XP_003704160.1| ; gene_orientation . LHQN01036086.1 exonerate:protein2genome:local cds 7 192 . + . LHQN01036086.1 exonerate:protein2genome:local exon 7 192 . + . insertions 0 ; deletions 0 LHQN01036086.1 exonerate:protein2genome:local similarity 7 192 152 + . alignment_id 1 ; Query gi|383857335|ref|XP_003704160.1| ; Align 7 90 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: LHQN01040768.1 Habropoda laboriosa contig40768, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 295 -> 340 Target range: 93 -> 228 296 : ArgValIlePheAlaPheHisLeuMetCysCysIleCysGlnLeuLeuMetPheThrTyrSerC : 317 |||||| !!!.|||! ! !! !||| !!:!: !!||||||! !|||||||||||||||| ArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerC 94 : CGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTT : 157 318 : ysAspCysLeuIleArgGluSerLeuAspValAlaThrAlaValTyrAsnSerProTrpThrVa : 338 ||||||||:!!! !! !|||||||||:!!:!!||| !:!!|||||| !.!!||||||! ! ysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAs 158 : GCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAA : 220 339 : lValPro : 340 !:!!||| nLeuPro 221 : TTTACCA : 228 vulgar: gi|383857333|ref|XP_003704159.1| 295 340 . LHQN01040768.1 93 228 + 120 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01040768.1 exonerate:protein2genome:local gene 94 228 120 + . gene_id 1 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation . LHQN01040768.1 exonerate:protein2genome:local cds 94 228 . + . LHQN01040768.1 exonerate:protein2genome:local exon 94 228 . + . insertions 0 ; deletions 0 LHQN01040768.1 exonerate:protein2genome:local similarity 94 228 120 + . alignment_id 1 ; Query gi|383857333|ref|XP_003704159.1| ; Align 94 296 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: LHQN01044749.1 Habropoda laboriosa contig44749, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 295 -> 340 Target range: 136 -> 1 296 : ArgValIlePheAlaPheHisLeuMetCysCysIleCysGlnLeuLeuMetPheThrTyrSerC : 317 |||||| !!!.|||! ! !|||||| !!:!: !!||||||! !|||||||||||||||| ArgValAlaLeuAlaCysPheLeuMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerC 136 : CGCGTTGCTTTGGCGTGCTTCTTGATGACGGGCGTGAGTCAACTATGGATGTTCACGTATAGTT : 73 318 : ysAspCysLeuIleArgGluSerLeuAspValAlaThrAlaValTyrAsnSerProTrpThrVa : 338 |||||||||||! !! !|||||||||:!!:!!||| !:!!|||||| !.!!||||||! ! ysAspCysLeuThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAs 72 : GCGATTGCCTAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAA : 10 339 : lValPro : 340 !:!!||| nLeuPro 9 : TTTACCA : 2 vulgar: gi|383857333|ref|XP_003704159.1| 295 340 . LHQN01044749.1 136 1 - 128 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01044749.1 exonerate:protein2genome:local gene 2 136 128 - . gene_id 1 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation . LHQN01044749.1 exonerate:protein2genome:local cds 2 136 . - . LHQN01044749.1 exonerate:protein2genome:local exon 2 136 . - . insertions 0 ; deletions 0 LHQN01044749.1 exonerate:protein2genome:local similarity 2 136 128 - . alignment_id 1 ; Query gi|383857333|ref|XP_003704159.1| ; Align 137 296 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857333|ref|XP_003704159.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 173 -> 220 Target range: 279 -> 420 174 : LeuThrProTyrPheGluIleIleSerAlaIleGluValLeuAlaLeuCysHisValGlyValC : 195 :!!! !||| ::: |||||| !! :!!!.!|||:!!:!!! !!!.|||..!|||| MetIleProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValAsnValC 280 : ATGATTCCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTAACGTGT : 343 196 : ysTyrLeuCysPheAspAsnPheLeuCysLeuMetAsnLeuHisAlaAlaCysGlnPheArgIl : 216 ||||||||||||||||||||...... :::||| !||||||!.!||| !!||||||||||| ysTyrLeuCysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArgIl 344 : GTTACCTTTGCTtcgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTAT : 406 217 : eLeuGlnHisArg : 220 |||||||:!!||| eLeuGlnTyrArg 407 : ACTACAATACAGA : 420 vulgar: gi|383857333|ref|XP_003704159.1| 173 220 . LHQN01049471.1 279 420 + 118 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 280 420 118 + . gene_id 1 ; sequence gi|383857333|ref|XP_003704159.1| ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 280 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 280 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 280 420 118 + . alignment_id 1 ; Query gi|383857333|ref|XP_003704159.1| ; Align 280 174 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857335|ref|XP_003704160.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 183 -> 219 Target range: 312 -> 420 184 : GlnMetLeuCysValTyrHisValAlaIleSerTyrPheCysPheAspAsnPheLeuCysLeuV : 205 ||| |||! !||||||!!.||| !:!:!!!|||.!!||||||||||||...... :::: GlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePhePheIleM 313 : CAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttttcatta : 376 206 : alCysLeuAsnIleThrGlyGlnPheArgIleLeuGlnHisArg : 219 ::||||||:!!:!:.!!|||||||||||||||||||||:!!||| etCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 377 : tgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: gi|383857335|ref|XP_003704160.1| 183 219 . LHQN01049471.1 312 420 + 116 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 313 420 116 + . gene_id 1 ; sequence gi|383857335|ref|XP_003704160.1| ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 313 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 313 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 313 420 116 + . alignment_id 1 ; Query gi|383857335|ref|XP_003704160.1| ; Align 313 184 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857757|ref|XP_003704370.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 143 Query range: 141 -> 185 Target range: 1339 -> 1207 142 : LeuTyrThrGlyLeuLeuLeuHisIleCysCysGlnPheGluIleLeuGluHisArgPheAr : 162 |||!:!!:!|||||||||:!!||||||! !||||||||||||||||||:!!||||||.!.!: LeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLy 1339 : CTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAA : 1279 163 : gSerLeuAsnSerAsnProIleTyrThrAlaAsnHisCysAlaSerHisHisHisLeuIleT : 183 !|||:!!!!. !!:!! ! |||:!!|||!!.!!.||||||! !||||||:!!! !|||| sSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrArgIleT 1278 : GAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGCATAT : 1216 184 : yrLysTyr : 185 |||||!:! yrLysPhe 1215 : ACAAGTTT : 1208 vulgar: gi|383857757|ref|XP_003704370.1| 141 185 . LHQN01050085.1 1339 1207 - 143 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 1208 1339 143 - . gene_id 1 ; sequence gi|383857757|ref|XP_003704370.1| ; gene_orientation . LHQN01050085.1 exonerate:protein2genome:local cds 1208 1339 . - . LHQN01050085.1 exonerate:protein2genome:local exon 1208 1339 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 1208 1339 143 - . alignment_id 1 ; Query gi|383857757|ref|XP_003704370.1| ; Align 1340 142 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857757|ref|XP_003704370.1| PREDICTED: odorant receptor 22b-like [Megachile rotundata] Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 138 Query range: 251 -> 318 Target range: 607 -> 245 252 : SerIleGluPheIleAspLysLeuPheGlnSerGlyTrpAlaSerTrpAsnGlySerSerLysM : 273 |||:!!|||.!! !|||! !:!!|||:!!|||..!|||.!!:!! !!:! !|||!!!|||! SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSerThrLysL 607 : AGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAGCACCAAAA : 544 274 : etValLeuLeuMetValMetArgArgSerArgThrProIleGluPheThrSerMetHisIleVa : 294 !..!||||||! !:!!||| !|||||| !! !|||||||||||||||.!! !:!! ! ysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheThrGlyAlaPheValPh 543 : AGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTT : 481 295 : lThrLeuAsnLeuGluSerPheMetSer >>>> Target Intron 1 >>>> LeuLeuA : 306 ! !!:!!|||||||||||||||! ||| 161 bp |||:!!! eProValAsnLeuGluSerPheLysSer++ ++LeuValL 480 : TCCCGTAAATTTGGAGTCTTTTAAAAGTgt.........................agTTGGTGA : 284 307 : rgThrSerTyrSerAlaPheAsnLeuMetSerSerThr : 318 :!||||||||||||!.!||||||:!!!!:..!..!||| ysThrSerTyrSerValPheAsnValIleGlnGlnThr 283 : AAACTTCCTATTCGGTATTCAACGTAATCCAGCAAACG : 246 vulgar: gi|383857757|ref|XP_003704370.1| 251 318 . LHQN01050085.1 607 245 - 138 M 52 156 5 0 2 I 0 157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 246 607 138 - . gene_id 2 ; sequence gi|383857757|ref|XP_003704370.1| ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 452 607 . - . LHQN01050085.1 exonerate:protein2genome:local exon 452 607 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 450 451 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 291 451 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 291 292 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 246 290 . - . LHQN01050085.1 exonerate:protein2genome:local exon 246 290 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 246 607 138 - . alignment_id 2 ; Query gi|383857757|ref|XP_003704370.1| ; Align 608 252 156 ; Align 291 304 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414601.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold45, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 138 Query range: 306 -> 406 Target range: 1068527 -> 1066752 307 : AspLeuGlnAsnMetValThrCysSerIleIleLeuPheSerMetSerCysAsnIl : 325 :!!||| !..!! ! !!|||! ! !:!: !:!!!!.! !:!:!!!! :! AsnLeuValGlyThrPheThrTyrValLeuTyrIleLeuLeuValThrSerLeuLe 1068527 : AATCTCGTGGGCACGTTCACATACGTTTTGTACATTTTGTTAGTCACGTCGTTGTT : 1068473 326 : ePheValValCysPheIleGlyGluLysLeuSerGluGln >>>> Target In : 339 !!:!:!! !! ||||||||||||::!|||:!! ! :!! 65 b uTyrLeuTyrSerPheIleGlyGluArgLeuAlaTyrGlu++ 1068472 : ATACTTGTACTCGTTCATAGGTGAACGATTGGCATACGAGgt.............. : 1068429 340 : tron 1 >>>> CysThrLysValGlyGluAlaValTyrMetThrGluTrpTyrH : 353 p ||||||||| !|||||| !||| ||||||||| ! . ++SerThrLysValThrGluAlaTyrTyrAspThrGluTrpGlnG 1068428 : ...........agtCGACGAAAGTGACCGAAGCGTACTATGATACCGAGTGGCAAG : 1068324 354 : isLeuProGlyLysAspIleLeuAspLeuValLeuIleIleSerArgSerSerVal : 371 !.||| !!! !::::!! ! ! |||:!!||| !!!: !! !.!! !! ! luLeuSerValArgAsnGlnLysLeuLeuLeuLeuAlaMetArgSerGlyArgArg 1068323 : AATTATCGGTCCGTAATCAAAAGCTGTTGCTTCTTGCCATGCGTTCTGGACGAAGA : 1068270 372 : ValThrLysIleThrAlaGlyLysIleValHisMetSerLeuTyrThrPheThrTh : 390 ..! ! ! :!!||||||||||||:!: !:!!.!.||||||||| !|||! ! ThrLeuTyrLeuThrAlaGlyLysValTyrAsnPheSerLeuTyrGlyPheIleHi 1068269 : ACGTTATACCTTACAGCTGGAAAAGTGTACAATTTCTCCTTGTACGGTTTTATCCA : 1068213 391 : r >>>> Target Intron 2 >>>> ValMetLysThrAlaPheAlaTyrIl : 399 ! 1410 bp :!!|||||||||:!!|||!.!|||:! s++ ++IleMetLysThrSerPheGlyTyrVa 1068212 : Tgt.........................agaTTATGAAAACCTCCTTCGGATACGT : 1066776 400 : eAsnValLeuArgGlnThrThr : 406 !::!:!!|||||| ! !||| lSerLeuLeuArgThrLeuThr 1066775 : TTCTCTATTACGAACATTAACT : 1066753 vulgar: gi|383850716|ref|XP_003700922.1| 306 406 . KQ414601.1 1068527 1066752 - 138 M 32 96 5 0 2 I 0 61 3 0 2 M 52 156 5 0 2 I 0 1406 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414601.1 exonerate:protein2genome:local gene 1066753 1068527 138 - . gene_id 1 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation + KQ414601.1 exonerate:protein2genome:local cds 1068432 1068527 . - . KQ414601.1 exonerate:protein2genome:local exon 1068432 1068527 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local splice5 1068430 1068431 . - . intron_id 1 ; splice_site "GT" KQ414601.1 exonerate:protein2genome:local intron 1068367 1068431 . - . intron_id 1 KQ414601.1 exonerate:protein2genome:local splice3 1068367 1068368 . - . intron_id 0 ; splice_site "ag" KQ414601.1 exonerate:protein2genome:local cds 1068211 1068366 . - . KQ414601.1 exonerate:protein2genome:local exon 1068211 1068366 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local splice5 1068209 1068210 . - . intron_id 2 ; splice_site "GT" KQ414601.1 exonerate:protein2genome:local intron 1066801 1068210 . - . intron_id 2 KQ414601.1 exonerate:protein2genome:local splice3 1066801 1066802 . - . intron_id 1 ; splice_site "ag" KQ414601.1 exonerate:protein2genome:local cds 1066753 1066800 . - . KQ414601.1 exonerate:protein2genome:local exon 1066753 1066800 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local similarity 1066753 1068527 138 - . alignment_id 1 ; Query gi|383850716|ref|XP_003700922.1| ; Align 1068528 307 96 ; Align 1068367 339 156 ; Align 1066801 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 339 -> 399 Target range: 1306700 -> 1305891 340 : ThrMetTrpThrArgIleProMetAsnLysTyrGlyLysMetLeuArgAsnAspLe : 358 ..!:!:!:: !!.!:!!||| ! !!!!.! ! !!!:! !!:!!.. ! || ValValTyrLeuAsnValProTrpTyrAsnLeuProProIleTyrGlnArgLysLe 1306700 : GTAGTCTACTTAAATGTACCATGGTACAATTTGCCGCCAATTTACCAGAGAAAACT : 1306646 359 : uMetMetValIleLeuArgAlaArgArgThrCysCysIleThrAlaAsnGlyPheP : 377 | |||:!!||||||||||||!:!!:! !||| !!||||||||| !||| uCysMetMetIleLeuArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPheA 1306645 : TTGCATGATGATCCTTAGGGCACAACAATATTGCAGCATCACGGCATTAACGTTTC : 1306589 378 : heProValSerLeuGluThrPheThrThr >>>> Target Intron 1 >>>> : 387 !!:!!|||:!!.!.|||!!.|||!:! 629 bp rgThrLeuSerIleHisThrLeuThrSer++ 1306588 : GAACGTTGTCTATTCACACGTTAACGAGCgt......................... : 1306557 388 : IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArg : 399 :!!!!!!:!|||||||||||||||||||||||||||||| ++ValPheAsnThrAlaAlaSerTyrPheThrLeuLeuArg 1306556 : agGTATTCAATACAGCCGCTTCATATTTCACTTTGCTGCGA : 1305892 vulgar: gi|383857331|ref|XP_003704158.1| 339 399 . KQ414608.1 1306700 1305891 - 104 M 47 141 5 0 2 I 0 625 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1305892 1306700 104 - . gene_id 1 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation + KQ414608.1 exonerate:protein2genome:local cds 1306560 1306700 . - . KQ414608.1 exonerate:protein2genome:local exon 1306560 1306700 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1306558 1306559 . - . intron_id 1 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1305931 1306559 . - . intron_id 1 KQ414608.1 exonerate:protein2genome:local splice3 1305931 1305932 . - . intron_id 0 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1305892 1305930 . - . KQ414608.1 exonerate:protein2genome:local exon 1305892 1305930 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1305892 1306700 104 - . alignment_id 1 ; Query gi|383857331|ref|XP_003704158.1| ; Align 1306701 340 141 ; Align 1305931 387 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383849003|ref|XP_003700136.1| PREDICTED: odorant receptor 85c-like isoform X3 [Megachile rotundata] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 270 -> 395 Target range: 1306928 -> 1306556 271 : LeuValThrLeuSerLysGluTyrAsnArgLeuPheSerSerSerMetPheValGl : 289 ||| !!:!:!! !!!.!:: |||...||||||::: !! !:!:|||||||| LeuTyrSerValValAsnAspValAsnAsnLeuPheThrProIleValPheValGl 1306928 : TTATACAGCGTGGTGAATGatgtgaataatttatttactccCATCGTTTTCGTACA : 1306874 290 : nMetLeuSerSerThrSerMetIleCysLeuThrGlyPheGlnAlaValValValG : 308 |:!:|||!!!||| !! !:!:|||||||||!:!|||||| |||||| !!! !. nLeuLeuThrSerGlyIleValIleCysLeuSerGlyPhe---AlaValPheAspA 1306873 : ACTTCTTACAAGCGGAATAGTAATTTGTTTAAGTGGATTC---GCGGTTTTCGATA : 1306820 309 : lyGlyGlnSerSerAspIleMetLysPheGlyMetTyrLeuSerAlaAlaValSer : 326 .!! ! !!!!!||||||:!!|||!:!! ! |||||||||:!! ! !! ! snAspAlaArgThrAspIleLeuLysTyrValSerTyrLeuSerSerIleTrpLeu 1306819 : ACGACGCCCGTACCGATATTCTGAAATACGTATCTTATTTGTCCTCGATTTGGTTG : 1306766 327 : GlnLeuLeuTyrIleCysTrpIleGlyAsnGluLeuSerTyrSerSerSerValLe : 345 |||||||||! |||! ! !|||.!. ||| ! ! ..!|||! !! !:! GlnLeuLeuLeuTrpCysLeuProGlyGluIleLeuValGlnGluSerLeuGluIl 1306765 : CAACTTTTGTTATGGTGTTTGCCCGGTGAAATTCTCGTTCAAGAGAGTTTAGAAAT : 1306709 346 : uAspLysSerGlnTrpLeuSerAspTrpHisHisGluHisLeuProSerIleValG : 364 !! ! ! !::|||!:!! :!!.!. ! !|||! ! ! !: eGlyHisValValTyrLeuAsnValProTrpTyrAsnLeuProProIleTyrGlnA 1306708 : AGGACACGTAGTCTACTTAAATGTACCATGGTACAATTTGCCGCCAATTTACCAGA : 1306652 365 : lnValPheThrLeuSerThrMetSerThrArgArgThrLeuThrLeuLysAlaGly : 382 :! !.!! !:!!! !! !:!:!!!.!!!:!!:! !! !!:!:!!! !||| ! rgLysLeuCysMetMetIleLeuArgAlaGlnGlnTyrCysSerIleThrAlaLeu 1306651 : GAAAACTTTGCATGATGATCCTTAGGGCACAACAATATTGCAGCATCACGGCATTA : 1306598 383 : IlePhePheValLeuSerLeuGluThrPheIleAlaIle : 395 ! ||| ..!||||||:!!.!.|||!!.! ::!:!: ThrPheArgThrLeuSerIleHisThrLeuThrSerVal 1306597 : ACGTTTCGAACGTTGTCTATTCACACGTTAACGAGCGTG : 1306557 vulgar: gi|383849003|ref|XP_003700136.1| 270 395 . KQ414608.1 1306928 1306556 - 111 M 32 96 G 1 0 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1306557 1306928 111 - . gene_id 1 ; sequence gi|383849003|ref|XP_003700136.1| ; gene_orientation . KQ414608.1 exonerate:protein2genome:local cds 1306557 1306928 . - . KQ414608.1 exonerate:protein2genome:local exon 1306557 1306928 . - . insertions 0 ; deletions 1 KQ414608.1 exonerate:protein2genome:local similarity 1306557 1306928 111 - . alignment_id 1 ; Query gi|383849003|ref|XP_003700136.1| ; Align 1306929 271 96 ; Align 1306833 304 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 336 -> 387 Target range: 204772 -> 204925 337 : GlnGlyAsnArgValAlaThrAlaSerTyrGluThrLeuTrpTyrAsnLeuProAlaL : 356 :!!..!.!...!||| !..!|||:!!|||||| ! !|||! |||||| !:!!! LysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerA 204773 : AAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGA : 204830 357 : ysLysAlaArgAspMetValLeuLeuLeuAlaIleSerLysThrProProLysLeuTh : 375 !.||||||!:!..!:!!:!!|||:!!:!!|||! :!!:!!! !|||! ! ||||| snLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuTh 204831 : ACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAAC : 204887 376 : rAlaGlyLysIlePheAspLeuSerLeuTyrThrPhe : 387 ||||||||||:::||| ::!!!!:!! |||||| rAlaGlyLysLeuPheProMetThrMetLeuThrPhe 204888 : CGcaggaaaattatttcctatGACGATGCTAACGTTT : 204925 vulgar: gi|383850740|ref|XP_003700934.1| 336 387 . KQ414617.1 204772 204925 + 109 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204773 204925 109 + . gene_id 1 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204773 204925 . + . KQ414617.1 exonerate:protein2genome:local exon 204773 204925 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204773 204925 109 + . alignment_id 1 ; Query gi|383850740|ref|XP_003700934.1| ; Align 204773 337 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 99 -> 244 Target range: 203786 -> 204224 100 : TyrIleTyrLeuAlaLeuArgGlySerIlePheGlyArgCysIleGluHisValGluA : 119 |||:!!:!!:!!|||! ! ! !! !:!!.!! !! ! !:!!.!. :!!! !. TyrValHisIleAlaSerPheLeu***ValLeuLeuProLeuValAsnMetIleAlaG 203787 : TATGTACATATCGCTTCTTTCCTTTAAGTTCTCTTGCCACTCGTAAACATGATCGCGG : 203844 120 : rgAspTrpArgThrValGlnAspGlnArgHisArgSerIleMetLeuGluCysAlaGl : 138 .!|||||| !! !:!!:!! .!. !.!.|||..!:!:|||:!!:!! ! .!! ! luAspTrpAlaLysLeuLysThrAspPheGluArgAspValMetIleGlnArgThrAr 203845 : AAGATTGGGCAAAGTTGAAAACGGATTTCGAAAGAGACGTGATGATACAACGAACACG : 203901 139 : yLeuSerArgLysLeuIleThrMetCysAlaAlaPheLeuTyrThrGlyGlyLeuSer : 157 !:!!!!!||| ! !! !! !:!! !! !|||!!.:!!!:!|||!.!! !:!!! ! gIleThrArgAlaThrSerIleLeuSerTyrAlaLeuIlePheThrAlaValMetPhe 203902 : AATTACCCGAGCAACCAGTATACTGAGTTATGCGTTAATATTTACTGCAGTAATGTTC : 203958 158 : HisHisThrValHisAlaPhePheSerLysAspArgArgHisSerAsnValThrIleA : 177 ..!:!!! ! ! !! !! !||| ! !!!|||! !|||! !! MetIleValLeuProArgThrGlyIleThrThrArgTyrValThrAsnGluThrAsnI 203959 : ATGATAGTCCTACCAAGAACCGGTATTACCACTAGATACGTAACAAACGAAACCAACA : 204018 178 : rgProLeuIleTyrProGlyTyrAspAlaPhe<->PheAspThrGlnAlaSerProTh : 195 ! ! !:!!!:!|||! ! ::: :::||| ...! !!!!||| leLysLysLeuPheProValProThrTyrTyrIleTyrAspIleSerGluThrProTy 204019 : TAAAAAAGCTTTTTCCGGTGCCaacttattatatttacgatataTCTGAAACTCCATA : 204075 196 : rTyrGluIleIleTyrCysMetGlnLeuLeuSerSerLeuIleValTyrThrIleGly : 214 !!:!||||||!!:!:! !:!:|||:!! !!!!! !:!!:!!:!! ! ! ! rPheGluIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyr 204076 : TTTTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTAC : 204132 215 : ThrAlaThrTyrSerLeuLeuValIlePheValMetHisIleCysGlyGlnIleGlnI : 234 ! !!.!..! !!!:!!!!!!!! !|||!!.:!!:!:|||||||||||||||:!::!!! IleGlyValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluA 204133 : ATTGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAA : 204192 235 : leGlnMetAlaArgLeuGluAsnLeuLysAsn : 244 !! .!!||||||! !|||:!!|||:!! snLeuArgThrArgLeuAlaAsnIleLysHis 204193 : ATCTTCGTACACGACTTGCAAACATAAAACAT : 204224 vulgar: gi|383850524|ref|XP_003700845.1| 99 244 . KQ414617.1 203786 204224 + 102 M 88 264 G 0 3 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203787 204224 102 + . gene_id 1 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203787 204224 . + . KQ414617.1 exonerate:protein2genome:local exon 203787 204224 . + . insertions 3 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203787 204224 102 + . alignment_id 1 ; Query gi|383850524|ref|XP_003700845.1| ; Align 203787 100 264 ; Align 204054 188 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857305|ref|XP_003704145.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 157 -> 233 Target range: 204020 -> 204248 158 : GluArgIleLeuProPheAsnLeuTrpIleAspPheProThrGlyMetSerProTyrP : 177 :!!!:!:!!!!!||| ! ::: ::: ..! !!!||||||| LysLysLeuPheProValProThrTyrTyrIleTyrAspIleSerGluThrProTyrP 204021 : AAAAAGCTTTTTCCGGTGCCaacttattatatttacgatataTCTGAAACTCCATATT : 204078 178 : heGluValPhePheThrIleGlnIleLeuCysValTyrHisValAlaIleSerTyrPh : 196 |||||:!!.!.||| !:!!|||!!: ! !:!! :!!|||:!!!!!|||.! heGluIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIl 204079 : TTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACAT : 204135 197 : eCysPheAspAsnPheLeuCysIleLeuCysLeuAsnIleThrGlyGlnPheArgIle : 215 ! !! !!|||||||||!!! ! |||||| !|||:!!||| !||||||!!...!! ! eGlyValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsn 204136 : TGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAAT : 204192 216 : LeuGlnHisArgLeuArgSerLeuAlaSerMetGlnThrCysGluGlnAsnLeu : 233 |||!:: |||||| !!:!:!! ! !:!!:!!|||! !!!:!::! !||| LeuArgThrArgLeuAlaAsnIleLysHisLeuGluThrPheAspArgIleLeu 204193 : CTTCGTACACGACTTGCAAACATAAAACATTTGGAAACTTTTGATCGTATTTTA : 204248 vulgar: gi|383857305|ref|XP_003704145.1| 157 233 . KQ414617.1 204020 204248 + 112 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204021 204248 112 + . gene_id 1 ; sequence gi|383857305|ref|XP_003704145.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204021 204248 . + . KQ414617.1 exonerate:protein2genome:local exon 204021 204248 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204021 204248 112 + . alignment_id 1 ; Query gi|383857305|ref|XP_003704145.1| ; Align 204021 158 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383849003|ref|XP_003700136.1| PREDICTED: odorant receptor 85c-like isoform X3 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence Model: protein2genome:local Raw score: 1245 Query range: 0 -> 414 Target range: 453891 -> 459228 1 : MetAlaArgThrProGlyHisLysTrpMetValAlaPheArgLysLeuIleAsnIleG : 20 |||||| !..!|||||||||:!!|||||| !:!!||||||:!!||||||:!!:!!| MetAlaTyrValProGlyHisGluTrpMetArgSerPheArgGlnLeuIleHisValG 453892 : ATGGCTTATGTGCCTGGCCACGAATGGATGAGATCATTTCGACAGTTGATTCATGTAC : 453949 21 : lnIleAsnTyrLeu{Ly} >>>> Target Intron 1 >>>> {s}TyrSerGl : 28 |||||!:!|||:!!{||} 140 bp {|}|||||||| lnIleSerTyrIle{Ly}++ ++{s}TyrSerGl 453950 : AAATAAGTTACATA{AA}gt.........................ag{A}TACAGTGG : 454113 29 : yLeuTrpValIleAspProGlyHisProTrpLeuSerLysSerAlaTyrLeuValCys : 47 ||||||| |||::: ||| !!! !!!!! !! !! !||||||!!!!.!! ! yLeuTrpLysIleGluSerLysHisSerSerPheMetThrIleAlaTyrPheAlaTyr 454114 : CCTctggaaaattgaatcgaaacACTCGTCGTTTATGACAATCGCTTACTTCGCGTAC : 454170 48 : LysGlyTrpThrLeuSerAlaMetTyrIlePheAlaIleThrLeuPheAlaAspIleC : 67 ||| !|||! !|||! ! !||| !!:!!||||||:!!|||:!!||||||||||||! LysLeuTrpIleLeuIleMetMetAsnValPheAlaValThrIlePheAlaAspIleT 454171 : AAACTATGGATACTCATAATGATGAACGTATTCGCCGTCACTATATTCGCAGACATCT : 454230 68 : ysAspAsnIleAspAsnLeuSerIleThrSerAspAspGlyCysValPheAlaGlyIl : 86 !!!:|||!!:|||||||||||||||! !||||||||||||||| !!.!!|||||||| yrGluAsnMetAspAsnLeuSerIleIleSerAspAspGlyCysPheLeuAlaGlyIl 454231 : ACGAGAACATGGACAACCTATCGATCATTAGCGACGACGGTTGTTTCCTCGCTGGAAT : 454287 87 : eAlaValValIlePheLysThrMetAsnTyrGlnIleArgGlnLysLysIleAlaLeu : 105 | !|||||||||||||||.!!|||||||||||||||!.!||||||...||| eLeuValValIlePheLysAlaMetAsnTyrGlnIleHisGlnLysSerIleIleLys 454288 : ACTCGTCGTGATTTTTAAGGCTATGAATTACCAAATTCATCagaaaagtataattaaa : 454344 106 : PheValAspLysValLeuLysCysSerAspAspLeuCysGluPheSer{A} >>>> : 122 ...:!!||| ! :!!|||!!.|||:!!||||||||||||..!||||||{|} LeuLeuAspAspIleLeuAsnCysAlaAspAspLeuCysArgPheSer{A}++ 454345 : ttgCTCGACGACATATTGAACTGTGCTGATGATCTCTGCAGATTTTCC{A}gt..... : 454398 123 : Target Intron 2 >>>> {sn}GluGluSerIleLysProIleIleAspLysTy : 133 1905 bp {||} |||!!!! !||| !||||||:!!::!|| ++{sn}ThrGluThrAsnLysTyrIleIleAsnArgTy 454399 : ....................ag{AT}ACCGAAACGAATAAATACATCATCAACCGATa : 456333 134 : rArgLeuArgIleThrValThrPheTrpGlyPheSerAlaLeuGlyCysAlaLeuGly : 152 | |||..!|||!::||||||||| !|||||||||!.!|||||| rTyrLysPheAsnLysValValPheTyrGlyPheSerMetLeuGlyCysValLeuGly 456334 : ctataaatttaacaaagtaGTTTTCTACGGGTTCAGCATGTTAGGATGCGTTTTAGGA : 456390 153 : PheLeuLeuLeuPheAlaSerProArgGlnAsnAspLeuProIleArgAlaLysTyrP : 172 .!. !||||||||| !||||||! !||||||! !|||||||||||||||||||||| IleAlaLeuLeuPhePheSerProLeuGlnAsnGlyLeuProIleArgAlaLysTyrP 456391 : ATAGCTCTGCTATTTTTCTCGCCTCTGCAGAACGGTTTGCCCATCAGAGCAAAGTATC : 456450 173 : roPheAsnThrThrThrProGlyTrpHisGluLeuSerPhePheIleGluThrCysAl : 191 ||||||||||||||! ! !! !!::!..|||:!!.!!!!. !:!!||||||! !|| roPheAsnThrThrIleSerProPheArgGluIleGlyLeuAlaValGluThrPheAl 456451 : CTTTTAACACCACTATATCTCCTTTCCGAGAGATTGGTTTGGCTGTCGAAACTTTTGC : 456507 192 : aValSerGlyGlyLeuValAlaIleValGlyMetAspSerIleThrIleTyrMetSer : 210 ||||||||||||||||:!!::!||||||!.!||||||!:!|||||| ! |||!!! aValSerGlyGlyLeuLeuSerIleValAlaMetAspAsnIleThrAlaMetMetCys 456508 : TGTTTCTGGTGGTTTATTGAGCATAGTTGCCATGGACAATATCACTGCAATGATGTGC : 456564 211 : SerIleIleThrMetLeuLeuAspIleLeuSerCysAsnPheGluSerCysSerGlyA : 230 ||| |||||| ! !!!!|||!!:|||!:! !||||||!.!|||!!!.!!! SerGlnIleThrAlaGlnPheAspMetLeuAsnValLeuPheGluLysCysThrSerG 456565 : AGCCAGATCACTGCTCAGTTCGATATGTTGAACGTACTTTTTGAGAAGTGTACTAGTC : 456624 231 : rgSerAlaAsnAsnGluAsnGlu >>>> Target Intron 3 >>>> IleCys : 239 :! !! !|||!!..!. .!. 816 bp lnValGluAsnLysAsnValAsn++ ++ThrAsp 456625 : AAGTGGAGAATAAAAACGTAAATgt.........................agaccgat : 457467 240 : LeuValArgAsnCysGluGluArgGlnArgAspLysTrpAspSerAsnLysPheLeuH : 259 ::: ... ||| !.!!:!! !:!!||| ! !!..!|||! !||||||! GluIlePheLysThrGluThrAsnArgIleAsnLysThrHisAspAsnThrPheLeuA 457468 : gaaattttcaagacagAAACCAATCGAATTAACAAGACGCACGACAACACGTTTCTTC : 457527 260 : isArgTyrLysAsnCysIleArgPheHisGlnArgLeuValThrLeuSerLysGluTy : 278 .!|||||||||!.!|||:!:!:!|||||||||||||||:!!:!!:!!!!!|||!!:|| rgArgTyrLysThrCysLeuGlnPheHisGlnArgLeuIleSerIleThrLysAspTy 457528 : GTCGTTACAAGACCTGTCTGCAATTTCATCAGAGATTGATCTCCATAACCAAAGATTA : 457584 279 : rAsnArgLeuPheSerSerSerMetPheValGlnMetLeuSerSerThrSerMetIle : 297 |||||||:!!!:!||||||||||||||||||||||||:!!||||||||||||!!:||| rAsnArgIleTyrSerSerSerMetPheValGlnMetIleSerSerThrSerIleIle 457585 : CAACAGAATCTACAGCTCGAGCATGTTCGTCCAGATGATCTCCAGCACTTCGATTATT : 457641 298 : CysLeuThrGlyPheGlnAlaValVal >>>> Target Intron 4 >>>> Va : 307 ||||||||||||||||||||||||||| 67 bp || CysLeuThrGlyPheGlnAlaValVal++ ++Va 457642 : TGCTTAACTGGTTTCCAAGCTGTCGTGgt.........................agGT : 457738 308 : lGlyGlyGlnSerSerAspIleMetLysPheGlyMetTyrLeuSerAlaAlaValSer : 326 ||||||||||||||||||||||||||||||||||!!:|||||||||||||||:!!||| lGlyGlyGlnSerSerAspIleMetLysPheGlyIleTyrLeuSerAlaAlaIleSer 457739 : CGGAGGGCAGAGCTCGGACATCATGAAGTTCGGGATCTACTTGAGCGCGGCCATATCT : 457795 327 : GlnLeuLeuTyrIleCysTrpIleGlyAsnGluLeuSerTyrSer >>>> Target : 342 |||||||||||||||||||||:!:||||||||||||||||||||| 8 GlnLeuLeuTyrIleCysTrpLeuGlyAsnGluLeuSerTyrSer++ 457796 : CAGCTGTTGTACATCTGTTGGCTGGGGAACGAGCTGAGCTACTCGgt........... : 457845 343 : Intron 5 >>>> SerSerValLeuAspLysSerGlnTrpLeuSerAspTrpHis : 355 7 bp |||||||||:!!|||!:!|||||||||||||||! !|||:!! ++SerSerValIleAspArgSerGlnTrpLeuSerGlyTrpAsn 457846 : ..............agAGTTCGGTGATAGACAGGAGTCAGTGGCTCTCCGGTTGGAAT : 457969 356 : HisGluHisLeuProSerIleValGlnValPheThrLeuSerThrMetSerThrArgA : 375 |||||||||||| !!|||||||||:!!:!!||||||||||||||||||! !||||||! HisGluHisLeuThrSerIleValLysIlePheThrLeuSerThrMetPheThrArgG 457970 : CACGAACATTTGACTAGTATCGTGAAAATCTTCACTCTGTCCACCATGTTCACCAGAC : 458029 376 : rgThrLeuThrLeuLysAlaGlyIlePhePheValLeuSerLeuGluThrPheIleAl : 394 :!:!!:!!|||||||||||||||:!!|||!:!|||||||||||||||||||||||||| lnSerIleThrLeuLysAlaGlyValPheTyrValLeuSerLeuGluThrPheIleAl 458030 : AGTCGATTACGTTGAAGGCTGGCGTATTTTATGTACTATCTCTGGAGACTTTTATCGC : 458086 395 : a >>>> Target Intron 6 >>>> IleValLysGlySerTyrSerValPheT : 404 | 1080 bp ||||||!:! !!|||||||||||||||| a++ ++IleValArgArgSerTyrSerValPheT 458087 : Ggt.........................agATCGTAAGGAGGTCCTACTCAGTCTTCA : 459196 405 : hrLeuLeuAsnAsnMetGlnThrThrAspPro : 414 |||||||||||||||||!!.:!!|||..!||| hrLeuLeuAsnAsnMetHisSerThrSerPro 459197 : CTCTATTGAACAACATGCATTCGACGAGTCCG : 459228 vulgar: gi|383849003|ref|XP_003700136.1| 0 414 . KQ414618.1 453891 459228 + 1245 M 24 72 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 96 288 S 0 1 5 0 2 I 0 1901 3 0 2 S 1 2 M 115 345 5 0 2 I 0 812 3 0 2 M 69 207 5 0 2 I 0 63 3 0 2 M 35 105 5 0 2 I 0 83 3 0 2 M 53 159 5 0 2 I 0 1076 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 453892 459228 1245 + . gene_id 1 ; sequence gi|383849003|ref|XP_003700136.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 453892 453965 . + . KQ414618.1 exonerate:protein2genome:local exon 453892 453965 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 453966 453967 . + . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 453966 454105 . + . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 454104 454105 . + . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 454106 454395 . + . KQ414618.1 exonerate:protein2genome:local exon 454106 454395 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 454396 454397 . + . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 454396 456300 . + . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 456299 456300 . + . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 456301 456647 . + . KQ414618.1 exonerate:protein2genome:local exon 456301 456647 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 456648 456649 . + . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 456648 457463 . + . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 457462 457463 . + . intron_id 2 ; splice_site "Ag" KQ414618.1 exonerate:protein2genome:local cds 457464 457670 . + . KQ414618.1 exonerate:protein2genome:local exon 457464 457670 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 457671 457672 . + . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 457671 457737 . + . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 457736 457737 . + . intron_id 3 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 457738 457842 . + . KQ414618.1 exonerate:protein2genome:local exon 457738 457842 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 457843 457844 . + . intron_id 5 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 457843 457929 . + . intron_id 5 KQ414618.1 exonerate:protein2genome:local splice3 457928 457929 . + . intron_id 4 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 457930 458088 . + . KQ414618.1 exonerate:protein2genome:local exon 457930 458088 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 458089 458090 . + . intron_id 6 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 458089 459168 . + . intron_id 6 KQ414618.1 exonerate:protein2genome:local splice3 459167 459168 . + . intron_id 5 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 459169 459228 . + . KQ414618.1 exonerate:protein2genome:local exon 459169 459228 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 453892 459228 1245 + . alignment_id 1 ; Query gi|383849003|ref|XP_003700136.1| ; Align 453892 1 72 ; Align 454107 26 288 ; Align 456303 123 345 ; Align 457464 238 207 ; Align 457738 307 105 ; Align 457930 342 159 ; Align 459169 395 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 336 -> 393 Target range: 3178740 -> 3178911 337 : GluGlnCysThrLysValGlyGluAlaValTyrMetThrGluTrpTyrHisLeuPr : 355 ...||| !! !|||||||||||||||:!!||| !! !!!:||| ||||| SerGlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuPr 3178741 : TCCCAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCC : 3178795 356 : oGlyLysAspIleLeuAspLeuValLeuIleIleSerArgSerSerValValThrL : 374 | ! ! ! !||||||:!!||||||!!::!!||||||!.! ! !..!| oThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValL 3178796 : CACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTA : 3178852 375 : ysIleThrAlaGlyLysIleValHisMetSerLeuTyrThrPheThrThrValMet : 392 ||!!:|||::!||| ! :!!||| !:!:||| ! ! :!!|||! !:!!|||! ysMetThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerValSer 3178853 : AAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTTAGT : 3178906 393 : Lys : 393 !:! Arg 3178907 : AGA : 3178911 vulgar: gi|383850716|ref|XP_003700922.1| 336 393 . KQ414646.1 3178740 3178911 + 104 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178741 3178911 104 + . gene_id 1 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178741 3178911 . + . KQ414646.1 exonerate:protein2genome:local exon 3178741 3178911 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178741 3178911 104 + . alignment_id 1 ; Query gi|383850716|ref|XP_003700922.1| ; Align 3178741 337 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 334 -> 389 Target range: 3178740 -> 3178905 335 : GluGlnCysLysAsnValGlyAspSerValTyrMetThrAsnTrpTyrTyrLeuPr : 353 ...||| !!:!!!!.||||||!!::!!:!!||| !! !:!!||| ||||| SerGlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuPr 3178741 : TCCCAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCC : 3178795 354 : oAspLysHisIleLeuAspLeuLeuLeuIleIleSerArgSerSerThrValIleL : 372 | ! ! ! !|||||||||||||||!!::!!||||||!.! ! !:!!| oThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValL 3178796 : CACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTA : 3178852 373 : ysMetThrAlaGlyLysPheValThrMetSerIleTyrThrPheAlaSerVal : 389 ||||||||::!||| ! !!|||..!:!:||| ! ! :!!||| !|||||| ysMetThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerVal 3178853 : AAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTT : 3178905 vulgar: gi|383850718|ref|XP_003700923.1| 334 389 . KQ414646.1 3178740 3178905 + 108 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178741 3178905 108 + . gene_id 1 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178741 3178905 . + . KQ414646.1 exonerate:protein2genome:local exon 3178741 3178905 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178741 3178905 108 + . alignment_id 1 ; Query gi|383850718|ref|XP_003700923.1| ; Align 3178741 335 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 341 -> 389 Target range: 1345579 -> 1345723 342 : AspSerValTyrMetThrAsnTrpTyrTyrLeuProAspLysHisIleLeuAspLe : 360 .!.:!! !|||.!.!:!||||||||| !!||||||||||||:!!! ! !...|| GlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLysTyrThrArgSerLe 1345580 : CAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAAATACACGCGATCGTT : 1345634 361 : uLeuLeuIleIleSerArgSerSerThrValIleLysMetThrAlaGlyLysPheV : 379 |:!!!!! !|||:!!||||||..!! ! ! ! :!:||||||||||||||| uIlePheCysIleAlaArgSerGlnLysProSerTyrLeuThrAlaGlyLysPheT 1345635 : AATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAGCTGGCAAGTTCT : 1345691 380 : alThrMetSerIleTyrThrPheAlaSerVal : 389 !..!.!.|||:!! ! ||||||!.!! !||| yrValPheSerLeuGluThrPheGlyIleVal 1345692 : ACGTGTTCTCGTTAGAAACATTCGGCATCGTG : 1345723 vulgar: gi|383850718|ref|XP_003700923.1| 341 389 . KQ414782.1 1345579 1345723 + 106 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345580 1345723 106 + . gene_id 1 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345580 1345723 . + . KQ414782.1 exonerate:protein2genome:local exon 1345580 1345723 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345580 1345723 106 + . alignment_id 1 ; Query gi|383850718|ref|XP_003700923.1| ; Align 1345580 342 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 337 -> 390 Target range: 1345564 -> 1345723 338 : GlyAsnArgValAlaThrAlaSerTyrGluThrLeuTrpTyrAsnLeuProAlaLy : 356 .!!::!..!:!! ! !|||!!!||| !:! !||||||:!!||||||! !|| SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 357 : sLysAlaArgAspMetValLeuLeuLeuAlaIleSerLysThrProProLysLeuT : 375 | ! .!!|||...:!::!!!!!! !:!!||| !|||:!!! !||| !! ! |||| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 376 : hrAlaGlyLysIlePheAspLeuSerLeuTyrThrPheGlyValVal : 390 |||||||||||.!!!:!! !!!|||||| ! |||||||||:!!||| hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIleVal 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCGTG : 1345723 vulgar: gi|383850740|ref|XP_003700934.1| 337 390 . KQ414782.1 1345564 1345723 + 110 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345723 110 + . gene_id 1 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345723 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345723 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345723 110 + . alignment_id 1 ; Query gi|383850740|ref|XP_003700934.1| ; Align 1345565 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383849003|ref|XP_003700136.1| PREDICTED: odorant receptor 85c-like isoform X3 [Megachile rotundata] Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 256 -> 395 Target range: 4394947 -> 4395361 257 : PheLeuHisArgTyrLysAsnCysIleArgPheHisGlnArgLeuValThrLeuSe : 275 :::|||||| ::: |||! !.!.! ! !! !||| !!:!:!! TrpLeuHisPhePhePheLeuThrIleLeuLeuLeuLeuLeuLeuTyrSerValVa 4394948 : tggttgcattttttttttttgacgataCTACTACTGCTACTTTTATACAGCGTTGT : 4395002 276 : rLysGluTyrAsnArgLeuPheSerSerSerMetPheValGlnMetLeuSerSerT : 294 !!!.!:: |||...|||...::: !! !!!:|||:!!|||:!:|||!!!||| lAsnAspValAsnAsnLeuLeuThrProIleIlePheMetGlnLeuLeuThrSerG 4395003 : GAACGacgtgaataatttattaacaccCATCATTTTCATGCAACTTCTTACGAGCG : 4395059 295 : hrSerMetIleCysLeuThrGlyPheGlnAlaValValValGlyGlyGlnSerSer : 312 !! ! !|||||||||!:!|||||| ||||||:!!! !..!||| .!!!!! lyIleGluIleCysLeuSerGlyPhe---AlaValIleAspAsnGlyThrGlyThr 4395060 : GAATAGAGATTTGTTTGAGTGGATTC---GCGGTGATCGATAACGGCACCGGTACC : 4395110 313 : AspIleMetLysPheGlyMetTyrLeuSerAlaAlaValSerGlnLeuLeuTyrIl : 331 |||:!!:!:||||||! ! ||||||!!!:!! !! ! !||||||||| AspLeuLeuLysPheValSerTyrLeuThrSerMetGlyValGlnLeuLeuLeuTr 4395111 : GATCTTCTCAAATTTGTGTCTTATTTAACCTCGATGGGGGTGCAACTTTTGCTATG : 4395167 332 : eCysTrpIleGlyAsnGluLeuSerTyrSerSerSerValLeuAspLysSerGlnT : 350 |||||| !|||.!. ||| ! ! ..!|||! !! !:!!! ! ! ! ! pCysTrpProGlyGluIleLeuValGlnGluSerLeuGluIleGlyHisValValT 4395168 : GTGTTGGCCTGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGTCATGTAGTCT : 4395224 351 : rpLeuSerAspTrpHisHisGluHisLeuProSerIleValGlnValPheThrLeu : 368 ::|||!:! :!!.!. ! !|||! ! ! !:!! !.!! !||| yrLeuAsnIleProTrpTyrAsnLeuProProIleTyrGlnLysGlnLeuCysLeu 4395225 : ATCTAAATATACCATGGTACAATTTACCACCGATTTATCAGAAACAACTTTGCCTG : 4395278 369 : SerThrMetSerThrArgArgThrLeuThrLeuLysAlaGlyIlePhePheValLe : 387 ! !! !!!:!!!.!!!:!!:! !! !!:!:!!! !||| !! ||| ..!|| MetIleIleArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPheGlnThrLe 4395279 : ATGATCATTAGGGCCCAACAGTATTGCAGCATTACGGCATTAACGTTTCAAACGTT : 4395335 388 : uSerLeuGluThrPheIleAlaIle : 395 ||||:!!.!.|||!!.! !|||:!! uSerIleHisThrLeuThrAlaVal 4395336 : GTCTATTCACACGTTAACAGCCGTA : 4395361 vulgar: gi|383849003|ref|XP_003700136.1| 256 395 . KQ414784.1 4394947 4395361 + 127 M 46 138 G 1 0 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4394948 4395361 127 + . gene_id 1 ; sequence gi|383849003|ref|XP_003700136.1| ; gene_orientation . KQ414784.1 exonerate:protein2genome:local cds 4394948 4395361 . + . KQ414784.1 exonerate:protein2genome:local exon 4394948 4395361 . + . insertions 0 ; deletions 1 KQ414784.1 exonerate:protein2genome:local similarity 4394948 4395361 127 + . alignment_id 1 ; Query gi|383849003|ref|XP_003700136.1| ; Align 4394948 257 138 ; Align 4395086 304 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 339 -> 393 Target range: 39968 -> 40130 340 : ThrLysValGlyGluAlaValTyrMetThrGluTrpTyrHisLeuProGlyLysAspIle : 359 ||| !:!!|||:!!:!!!.!||| !.!.|||||| !!|||||| !||| !! ! ThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHisAla 39969 : ACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCATGCT : 40026 360 : LeuAspLeuValLeuIleIleSerArgSerSerValValThrLysIleThrAlaGlyLys : 379 :!!...||||||:!!:!:|||!!!|||:!!..!||| ! !:!!||||||||||||||| ValSerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGlyLys 40027 : GTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGAAAA : 40086 380 : IleValHisMetSerLeuTyrThrPheThrThrValMetLys : 393 .!! !! !.!.|||||| ! !|||!.!.!!|||! ::! PheSerProPheSerLeuGluLeuPheAsnAlaValSerArg 40087 : TTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTGTGAGTCGA : 40130 vulgar: gi|383850716|ref|XP_003700922.1| 339 393 . KQ414804.1 39968 40130 + 107 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39969 40130 107 + . gene_id 1 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39969 40130 . + . KQ414804.1 exonerate:protein2genome:local exon 39969 40130 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39969 40130 107 + . alignment_id 1 ; Query gi|383850716|ref|XP_003700922.1| ; Align 39969 340 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 119 -> 249 Target range: 36590 -> 36974 120 : AspTrpArgThrValGlnAspGlnArgHisArgSerIleMetLeuGluCysAlaGlyLeu : 139 |||||| ! ! ! :!! ! !!||| !! ||||||:!! !||| !:!! AspTrpAlaGluProIleProGluValAspArgHisThrMetLeuLysThrAlaLysIle 36591 : GACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACGATGCTGAAGACCGCGAAAATT : 36648 140 : SerArgLysLeuIleThrMetCysAlaAlaPheLeuTyrThrGlyGlyLeuSerHisHis : 159 ||||||! !:!! !! !:!:|||:!! !.!. !|||..! !! !|||:!! ! SerArgMetIleSerIleValCysSerIleLeuThrTyrValMetValLeuAlaPheLeu 36649 : AGTCGAATGATATCCATAGTCTGTTCTATCCTGACGTATGTCATGGTTTTGGCCTTCTTG : 36708 160 : ThrValHisAlaPhePheSerLysAspArgArgHisSerAsnValThrIleArgProLeu : 179 :!!:!!!!. .!!!::|||!.. !:!!.! !|||.!. !!!.!:!! !! !||| SerLeuGln---IleTrpSerSerMetGlnAsnThrSerGluPheAsnValGlyGlyLeu 36709 : TCACTTCAA---ATTTGGAGCAGCATGCAAAACACCTCGGAGTTCAACGTAGGAGGACTA : 36765 180 : IleTyrProGlyTyrAspAlaPhePheAspThrGlnAlaSerProThrTyrGluIleIle : 199 :!! !|||!.! ! !! !:!||||||.!. !||||||!.!|||||||||! ! LeuIleProAlaThrPhePro---TyrAspThrAsnLysSerProAsnTyrGluIleThr 36766 : CTTATCCCGGCCACATTTCCA---TACGACACGAATAAAAGTCCTAATTACGAAATTACT : 36822 200 : TyrCysMetGlnLeuLeuSerSerLeuIleValTyrThrIleGlyThrAlaThrTyrSer : 219 !:: ! |||!!!:!!.!!!!!:!!:!: ! ! ! ! !:!!..! ! !!!!! TrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSerCysPheAspThr 36823 : TGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGATACG : 36882 220 : LeuLeuValIlePheValMetHisIleCysGlyGlnIleGlnIleGlnMetAlaArgLeu : 239 !!!:!!!.!:!!.!!|||:!:|||||||||||||||:!! :!!! ! !||| PheValAlaValLeuValLeuHisIleCysGlyGlnLeuThrValLeuArgIleAlaLeu 36883 : TTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTC : 36942 240 : GluAsnLeuLysAsnAlaArgLeuGluAsn : 249 ||||||||| |||.!!! !:!!:!!:!! GluAsnLeuAlaAsnThrThrIleLysAsp 36943 : GAGAATCTTGCTAACACGACAATAAAAGAC : 36974 vulgar: gi|383850524|ref|XP_003700845.1| 119 249 . KQ414804.1 36590 36974 + 119 M 43 129 G 1 0 M 23 69 G 1 0 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36591 36974 119 + . gene_id 1 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36591 36974 . + . KQ414804.1 exonerate:protein2genome:local exon 36591 36974 . + . insertions 0 ; deletions 2 KQ414804.1 exonerate:protein2genome:local similarity 36591 36974 119 + . alignment_id 1 ; Query gi|383850524|ref|XP_003700845.1| ; Align 36591 120 129 ; Align 36720 164 69 ; Align 36789 188 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 338 -> 389 Target range: 39971 -> 40124 339 : AsnValGlyAspSerValTyrMetThrAsnTrpTyrTyrLeuProAspLysHisIleLeu : 358 ...:!!|||.!.|||!.!||| !||||||||| !!|||||| |||||| !:!! GlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHisAlaVal 39972 : GGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCATGCTGTT : 40029 359 : AspLeuLeuLeuIleIleSerArgSerSerThrValIleLysMetThrAlaGlyLysPhe : 378 ...|||:!!:!!:!:|||!!!|||:!!..!..! !.!!:!!!!:||||||||||||||| SerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGlyLysPhe 40030 : TCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGAAAATTC : 40089 379 : ValThrMetSerIleTyrThrPheAlaSerVal : 389 ! !!.!.|||:!! ! !||| !:!!||| SerProPheSerLeuGluLeuPheAsnAlaVal 40090 : AGTCCCTTTTCTCTCGAGCTGTTTAACGCTGTG : 40124 vulgar: gi|383850718|ref|XP_003700923.1| 338 389 . KQ414804.1 39971 40124 + 114 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39972 40124 114 + . gene_id 1 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39972 40124 . + . KQ414804.1 exonerate:protein2genome:local exon 39972 40124 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39972 40124 114 + . alignment_id 1 ; Query gi|383850718|ref|XP_003700923.1| ; Align 39972 339 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 306 -> 390 Target range: 33837 -> 34543 307 : SerValAlaIleLeuThrTyrAlaMetLeuLeuIleSerPheIlePheAsnIleLeuMet : 326 !:!||| !:!:||| !!:!!.!:!!!!!:!! !! !.!!:!! ! :!!|||! !!!: AsnValGlnLeuLeuPhePheValLeuPheValCysPheIleLeuValHisIleTyrIle 33838 : AACGTGCAATTGCTTTTCTTCGTGCTGTTCGTATGCTTCATCCTTGTACACATCTACATT : 33895 327 : PheCysTyrLeuGlyGluLeuLeuLeuGluGln >>>> Target Intron 1 >>>> : 338 !:!||||||:!!||||||:!!|||||| !!!. 454 bp TyrCysTyrIleGlyGluMetLeuLeuThrHis+- 33896 : TATTGTTACATAGGAGAGATGCTACTCACACATgc......................... : 33933 339 : GlyAsnArgValAlaThrAlaSerTyrGluThrLeuTrpTyrAsnLeuProAlaLysL : 357 .!!!....!:!!::!!.!:!!:!!||||||:!! !|||||||||:!! !! !! !: ++SerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProProG 33934 : agAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCAG : 34442 358 : ysAlaArgAspMetValLeuLeuLeuAlaIleSerLysThrProProLysLeuThrAlaG : 377 !!|||!:! !:!::!!!!!:!!:!! !! !!!! !|||! ! |||||||||| luAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAlaG 34443 : AAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCAG : 34502 378 : lyLysIlePheAspLeuSerLeuTyrThrPheGlyValVal : 390 |||||.!! ! !!!!|||:!! ! ! !|||.!!..!||| lyLysPheSerThrPheSerMetGluMetPheSerThrVal 34503 : GAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTGTA : 34543 vulgar: gi|383850740|ref|XP_003700934.1| 306 390 . KQ414804.1 33837 34543 + 112 M 31 93 5 0 2 I 0 450 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33838 34543 112 + . gene_id 1 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33838 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33838 33930 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 1 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34543 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34543 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33838 34543 112 + . alignment_id 1 ; Query gi|383850740|ref|XP_003700934.1| ; Align 33838 307 93 ; Align 34385 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857305|ref|XP_003704145.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 577 Query range: 128 -> 398 Target range: 17761 -> 19894 129 : IleValPheIleMetPheCysValGlnGlyGlyCysSerGlyTyrAlaIleThrProPhe : 148 |||...|||||| |||:::...... ... !||| !.!! !.!! IleThrPheIleAlaGlnLysValGluAsnAsnLysGlu***ValAlaArgAlaPheIle 17762 : attacttttattgcacaaaaagtagaaaataataaagaataagTTGCTCGCGCTTTCATT : 17819 149 : ValGluAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnLeuTrpIleAsp : 168 :!: ||||||||||||||||||||||||||||||||||||||||||:!!|||:!!:!! LeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpValAsn 17820 : TTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTCAAC : 17879 169 : PheProThrGlyMetSerProTyrPheGluValPhePheThrIleGln >>>> Targe : 185 !!.||| !..!|||!!!||||||!:!|||::: |||::::::||| LeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln++ 17880 : TTGCCATTATCAATGACGCCATATTACgaaataactttttcattaCAGgt.......... : 17932 186 : t Intron 1 >>>> IleLeuCysValTyrHisValAlaIleSerTyrPheCysPheA : 199 110 bp ::!|||! !:!!||||||:!!!.!:!:|||||||||||||||| ++ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysPheA 17933 : ...............aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgcttcg : 18082 200 : spAsnPheLeuCysIleLeuCysLeuAsnIleThrGlyGlnPheArgIleLeuGlnHisA : 219 |||||||||||||||||:!! !|||:!! .!! !|||||||||:!!||||||:!!| spAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnTyrA 18083 : acaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAATACC : 18142 220 : rgLeuArgSerLeuAlaSerMet<-><-><->GlnThrCysGluGlnAsnLeuAsnArgS : 236 ||:!! !!:!:!!.!!..!:!: ::: |||:::|||:::.!.! !| rgMetAlaAsnMetThrAspLeuLysAspLysGluArgLysGluArgAsnMetLysThrS 18143 : GAATGGCGAATATGACCGATTTAAAGGacaaagagaggaaagagagaaatatgaAGACAA : 18202 237 : erArgThrLysSer<-><->AlaIleGluArgLeuIleLysLeuLysSerCysIleArgH : 254 || !!:!..!:!! |||! !||| !!! !! ! ||||||..!! !||||||! erValSerSerAlaCysPheAlaThrGluCysTyrAsnValLeuLysAspTyrIleArgG 18203 : GTGTGAGTTCGGCGTGCTTTGCAACAGAATGTTACAACGTTCTCAAAGATTATATCAGAC : 18262 255 : isHisGlnAlaLeuIleAsnTyrCysArgLysLeuGluAsnValPheThrLeuIleIleL : 274 !.|||||| !|||||| !||||||!.!|||||||||!!.||||||!.!:!!|||:!!| lnHisGlnAsnLeuIleAlaTyrCysAsnLysLeuGluLysValPheAsnIleIleValL 18263 : AGCATCAGAACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGTTCAATATCATTGTTC : 18322 275 : euGlyGluIleLeuPheValAlaLeuLeuLeuCysCysLeuGlyPheGlnValPheLeu : 294 |||||:!!:!:|||.!. !!::!:!!|||:!!||| ! !|||||||||:!!.!!:!! euGlyGlnLeuLeuMetPheSerMetLeuIleCysLeuAspGlyPheGlnIleLeuMet+ 18323 : TGGGGCAATTGTTAATGTTCAGCATGTTGATCTGTCTCGATGGATTTCAGATACTTATGg : 18382 295 : >>>> Target Intron 2 >>>> MetPheThrProProAlaArgArgIleSerLe : 304 975 bp !|||||| !! !! !|||:!:! !!! + ++AlaAsnThrProThrArgThrArgLeuIlePh 18383 : t.........................agGCAAATACACCTACCAGAACCCGACTGATTTT : 19387 305 : uValLeuSerMetMetAlaValSerSerGlnLeuLeuMetPheSerTyrCysTrpAspGl : 324 !:!!!!! !!!: ||| !! !!!!|||||||||||||||!!!||| !!!! ||| ! eIlePheHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCy 19388 : CATCTTTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGCTGCGACTG : 19447 325 : yLeuMetArgGluSerGlyAsnIleGlyGlnAlaAlaPheAlaGlyProTrpPheValAl : 344 !:!!!!:||||||||| !!:!! !!.!:!!|||!.!!:!::!||||||||| :!! sIleIleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyProTrpThrLeuLe 19448 : CATCATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGACACTTTT : 19507 345 : aLysMetAsnGluGlyGlyArgAlaLeuArgGluAspValLeuIleIleIleMetArgAl : 364 ! !|||!:!! !! !|||!:! !:!!|||:!!|||:!!:!!:!!:!!|||||||||:! uProMetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuValIleMetArgSe 19508 : ACCAATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCATGAGATC : 19567 365 : aAsnLysAlaCysCysLeuThrAlaGlyGlyPhePheProValSerLeuGluThrPheTh : 384 !!:! ! !!||||||||||||||| !!||||||||| !|||||||||||||||!:!|| rSerValProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGluThrTyrTh 19568 : GAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAACGTACAC : 19627 385 : rAla >>>> Target Intron 3 >>>> ValLeuSerThrAlaValSerTyrPhe : 394 |!.! 223 bp |||||||||||||||!.!||||||||| rGly++ ++ValLeuSerThrAlaAlaSerTyrPhe 19628 : AGGGgt.........................agGTTTTAAGCACCGCAGCCTCATACTTT : 19880 395 : ThrLeuLeuArg : 398 |||||||||!:! ThrLeuLeuLys 19881 : ACGTTGCTGAAG : 19894 vulgar: gi|383857305|ref|XP_003704145.1| 128 398 . KQ414828.1 17761 19894 + 577 M 56 168 5 0 2 I 0 106 3 0 2 M 42 126 G 0 9 M 14 42 G 0 6 M 53 159 5 0 2 I 0 971 3 0 2 M 92 276 5 0 2 I 0 219 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17762 19894 577 + . gene_id 1 ; sequence gi|383857305|ref|XP_003704145.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17762 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17762 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18381 . + . insertions 15 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19894 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19894 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17762 19894 577 + . alignment_id 1 ; Query gi|383857305|ref|XP_003704145.1| ; Align 17762 129 168 ; Align 18040 185 126 ; Align 18175 227 42 ; Align 18223 241 159 ; Align 19357 294 276 ; Align 19856 386 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857305|ref|XP_003704145.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 574 Query range: 147 -> 407 Target range: 2873 -> 5274 148 : PheValGluAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnLeuTrpIleAs : 168 ||| !! !!::||||||||||||||||||!!:|||:!!||| ! !!|||!!!|||||||| PheSerAlaSerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAs 2874 : TTCTCAGCAAgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGA : 2934 169 : pPheProThrGlyMetSerProTyrPheGluValPhePheThrIleGln >>>> Target : 185 |.!.|||! ! !!!:!!!||||||:::|||:::...|||||||||||| 4 pLeuProIleThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2935 : CCTGCCGATAACCATCACACCATactatgaaatattatttacgaTACAGgt........... : 2987 186 : Intron 1 >>>> IleLeuCysValTyrHisValAlaIleSerTyrPheCysPheAspA : 200 06 bp |||!!! !:!! :!!|||..!|||||||||.!!|||.!!|||| ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspA 2988 : ..............agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACA : 3436 201 : snPheLeuCysIleLeuCysLeuAsnIleThrGlyGlnPheArgIleLeuGlnHisArgLeu : 220 |||||||||||!!::!! !|||:!!! !.!! !||||||||||||||||||:!!|||||| snPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeu 3437 : ATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTG : 3496 221 : ArgSerLeuAlaSerMetGlnThrCysGluGlnAsnLeuAsnArgSerArgThrLysSerAl : 241 !!:!:!!..!.!! .!. ! !!.........:::::::::... !!...!:!:! SerAsnValCysGlyAlaAsnGluArgSerAspLysIleSerLysLysThrProSerAsnSe 3497 : TCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTC : 3559 242 : aIleGluArgLeuIleLysLeuLysSerCysIleArgHisHisGlnAlaLeuIleAsnTyrC : 262 ! !||| !!! ! !|||!!!|||!:!||||||!:!!!.|||||||||||||||.!.|||| rAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrC 3560 : GGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACT : 3622 263 : ysArgLysLeuGluAsnValPheThrLeuIleIleLeuGlyGluIleLeuPheValAlaLeu : 282 ||!.!||||||:!!.!.|||||| !:!!.!!:!:|||!.!:!!:!:|||.!! !!::!||| ysAsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeu 3623 : GTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTG : 3682 283 : LeuLeuCysCysLeuGlyPheGlnValPheLeu >>>> Target Intron 2 >>>> : 294 |||:!!||| ! !|||!:! !||| :!! 457 bp LeuMetCysLeuAspGlyTyrLeuVal---Met++ ++ 3683 : TTAATGTGCCTCGATGGATATTTGGTG---ATGgt.........................ag : 4170 295 : MetPheThrProProAlaArgArgIleSerLeuValLeuSerMetMetAlaValSerSerGl : 314 !|||||| ! !!:!|||:!!!!!!!!:!!!!! !:!:! !!.! ! !!!!|| GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGl 4171 : GAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCA : 4232 315 : nLeuLeuMetPheSerTyrCysTrpAspGlyLeuMetArgGluSerGlyAsnIleGlyGlnA : 335 |||||||||||||!!!||| !!!! ||| !!|||!!:||||||||| !|||:!:!.!.!.| nLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnA 4233 : ACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATG : 4295 336 : laAlaPheAlaGlyProTrpPheValAlaLysMetAsnGluGlyGlyArgAlaLeuArgGlu : 355 || !!:!! ! !! !!|||.!! ! ! !|||:!!..!..!|||||| !||||||:!! laIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLys 4296 : CTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAA : 4355 356 : AspValLeuIleIleIleMetArgAlaAsnLysAlaCysCysLeuThrAlaGlyGlyPhePh : 376 |||:!! !.!!:!!||| |||:!!!.. ! !!||||||||||||||| !!|||||||| AspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePh 4356 : GATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTT : 4418 377 : eProValSerLeuGluThrPheThrAla >>>> Target Intron 3 >>>> ValLe : 387 |||||||||||||||||||!:!|||:!! 761 bp :!!|| eProValSerLeuGluThrTyrThrSer++ ++IleLe 4419 : CCCTGTGTCACTGGAAACGTACACTTCGgt.........................agATTTT : 5212 388 : uSerThrAlaValSerTyrPheThrLeuLeuArgAsnSerAlaProAspLeuIleLysThr : 407 ||||||||||!.!||||||||||||||||||||||||..!! ! !!!!::!!:!!:!!||| uSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnGlnGluAlaGluIleValGluThr 5213 : AAGTACCGCAGCGTCATACTTCACACTGCTACGAAACCAAGAAGCAGAAATAGTTGAAACA : 5274 vulgar: gi|383857305|ref|XP_003704145.1| 147 407 . KQ414828.1 2873 5274 + 574 M 37 111 5 0 2 I 0 402 3 0 2 M 107 321 G 1 0 M 1 3 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 757 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2874 5274 574 + . gene_id 2 ; sequence gi|383857305|ref|XP_003704145.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2874 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2874 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 5208 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 5207 5208 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 5209 5274 . + . KQ414828.1 exonerate:protein2genome:local exon 5209 5274 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2874 5274 574 + . alignment_id 2 ; Query gi|383857305|ref|XP_003704145.1| ; Align 2874 148 111 ; Align 3391 185 321 ; Align 3712 293 3 ; Align 4172 294 276 ; Align 5209 386 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857305|ref|XP_003704145.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 491 Query range: 147 -> 407 Target range: 32386 -> 34325 148 : PheValGluAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnLeuTrpIle : 167 ...::: |||:!!|||||||||||||||!!:||| !! ! !!:!:!!:!!|||:!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 32387 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 32444 168 : AspPheProThrGlyMetSerProTyrPheGluValPhePheThrIleGlnIleLeuCys : 187 |||.!.||| !..!:!:!!!||||||:::|||::: ::!! !||||||:!!||| AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 32445 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 32504 188 : ValTyrHisValAla{I} >>>> Target Intron 1 >>>> {le}SerTyrPhe : 196 :!!!:! ! {!} 307 bp {!:}!!!|||.!! IlePheSerArgGln{M}-+ ++{et}CysTyrLeu 32505 : ATTTTCTCAAGGCaa{a}ct.........................ag{TG}TGTTACCTT : 32838 197 : CysPheAspAsnPheLeuCysIleLeuCysLeuAsnIleThrGlyGlnPheArgIleLeu : 216 ||||||||||||...... |||:::||||||:!!:!:.!!|||||||||||||||||| CysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeu 32839 : TGCTttgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTA : 32898 217 : GlnHisArgLeuArgSerLeuAlaSerMet<->GlnThrCysGluGlnAsnLeuAsnArg : 235 |||:!!|||:!! !!:!:!!:!!.!!:!: :!!! ! :!!...||| !|||! ! GlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerAsnAspAsnThr 32899 : CAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACA : 32958 236 : SerArgThrLysSerAlaIleGluArg<->LeuIleLysLeuLysSerCysIleArgHis : 254 |||! !.!!:!!! ! ! !|||!:! ! !||||||!!!|||!:!||||||!:!!!. SerThrAlaGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGln 32959 : AGCACGGCTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAA : 33018 255 : HisGlnAlaLeuIleAsnTyrCysArgLysLeuGluAsnValPheThrLeuIleIleLeu : 274 |||||||||||||||...:::|||... ||||||.!.|||||||||:!!|||:!!||| HisGlnAlaLeuIleGluPheCysGluIleLeuGluGluValPheThrValIleValLeu 33019 : CATCAGGCACTaattgaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTC : 33078 275 : GlyGluIleLeuPheValAlaLeuLeuLeuCysCysLeuGlyPheGlnValPheLeu > : 294 |||:!!:!!|||.!. !!::!:!!:!!:!!|||! ! !|||!:!:!!|||.!!||| GlyGlnValLeuMetPheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeu++ 33079 : GGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGgt. : 33140 295 : >>> Target Intron 2 >>>> MetPheThrProProAlaArgArgIleSerLeuV : 305 406 bp !!: !||| !! ! !|||:!!:!!!!!. ++IleThrLeuProPheGluSerArgValAlaPheT 33141 : ........................agATAACGTTACCATTTGAATCGCGCGTTGCTTTCA : 33577 306 : alLeuSerMetMetAlaValSerSerGlnLeuLeuMetPheSerTyrCysTrpAspGlyL : 325 .!! !! !:!!!!:.!!! ! !|||||||||! !||||||!!!||| !!!! :!! !!: hrCysPheLeuIleThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAsnCysI 33578 : CGTGCTTCTTGATTACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCAATTGCA : 33637 326 : euMetArgGluSerGlyAsnIleGlyGlnAlaAlaPheAlaGlyProTrpPheValAlaL : 345 !!! ! !|||||| !||||||!.!:!!:!!!.!!:!||||||||||||.!. ! ! leThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuP 33638 : TAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTAC : 33697 346 : ysMetAsnGluGlyGlyArgAlaLeuArgGluAspValLeuIleIleIleMetArgAlaA : 365 !|||:::::: |||::: ||||||:!!|||:!!! !:!::!!|||:!!||||||! roMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaA 33698 : CAATggataaatttggaaaactgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGA : 33757 366 : snLysAlaCysCysLeuThrAlaGlyGlyPhePheProValSerLeuGluThrPheThrA : 385 ..::! !!! !..!||||||||| !!||||||||| !!:!!!!!||||||||||||||| rgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleThrLeuGluThrPheThrL 33758 : GACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTACTA : 33817 386 : la >>>> Target Intron 3 >>>> ValLeuSerThrAlaValSerTyrPheTh : 395 ! 440 bp :!!:!!||||||:!!:!!||||||||||| ys++ ++IleMetSerThrSerMetSerTyrPheTh 33818 : AGgt.........................agATCATGAGTACATCAATGTCGTATTTCAC : 34287 396 : rLeuLeuArgAsnSerAlaProAspLeuIleLysThr : 407 |||||||!:!.!.|||||| !||| !:!!!!.:!! rLeuLeuLysGlnSerAlaGluAspThrValAsnSer 34288 : CCTACTAAAACAAAGTGCCGAGGACACAGTAAATTCG : 34325 vulgar: gi|383857305|ref|XP_003704145.1| 147 407 . KQ414828.1 32386 34325 + 491 M 45 135 S 0 1 5 0 2 I 0 303 3 0 2 S 1 2 M 33 99 G 0 3 M 18 54 G 0 3 M 49 147 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32387 34325 491 + . gene_id 3 ; sequence gi|383857305|ref|XP_003704145.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32387 32522 . + . KQ414828.1 exonerate:protein2genome:local exon 32387 32522 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32523 32524 . + . intron_id 1 ; splice_site "ct" KQ414828.1 exonerate:protein2genome:local intron 32523 32829 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32828 32829 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32830 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32830 33137 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 3 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34325 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34325 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32387 34325 491 + . alignment_id 3 ; Query gi|383857305|ref|XP_003704145.1| ; Align 32387 148 135 ; Align 32832 194 99 ; Align 32934 227 54 ; Align 32991 245 147 ; Align 33544 294 276 ; Align 34260 386 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857305|ref|XP_003704145.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 449 Query range: 187 -> 406 Target range: 10840 -> 13167 188 : ValTyrHisValAlaIleSerTyrPheCysPheAspAsnPheLeuCysIleLeuCysLeu : 207 :!!||| !..!!.!|||!!!||||||||||||||||||.!!!!!||||||:!! !!:!! LeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerVal 10841 : CTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTG : 10898 208 : AsnIleThrGlyGlnPheArgIleLeuGlnHisArgLeuArgSerLeuAlaSerMet<-> : 227 :!!:!:!:!|||||||||||||||||||||:!!||||||! !!.!|||:!!..!:!: HisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGln 10899 : CATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAA : 10958 228 : <->GlnThrCysGluGlnAsnLeuAsnArgSerArgThrLysSerAlaIleGluArgLeu : 245 |||! ! |||:::|||:::... ! ! ! ! ! !!!.!! !..! !! ! TyrGlnIleSerGluLysAsnMetGluSerValLeuGluAspCysThrArgArgSerTyr 10959 : TATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGTAGATCTTAC : 11018 246 : IleLysLeuLysSerCysIleArgHisHisGlnAlaLeuIleAsnTyrCysArgLysLeu : 265 |||!!!||||||! !:!!|||!!.||||||.!!||||||:!!|||! !..!|||||| GluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLysLeu 11019 : GAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAGCTT : 11078 266 : GluAsnValPheThrLeuIleIleLeuGlyGluIleLeuPheValAlaLeuLeuLeuCys : 285 |||:!!|||!:!||| !||||||||||||:!!:!:|||.!. !!::!:!!|||:!!||| GluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIleCys 11079 : GAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATTTGC : 11138 286 : CysLeuGlyPheGlnValPheLeuMet<->PheThrProProAla{A} >>>> Targe : 300 !!!!|||!:!|||:!!!!.|||:!: .!!:!!! !||| !!{|} 1 LeuPheGlyTyrGlnIleLeuLeuValSerIleSerLeuProPro{A}-+ 11139 : CTCTTTGGTTATCAGATATTATTGGTTAGTATTTCACTTCCTCCA{A}ct.......... : 11189 301 : t Intron 1 >>>> {rg}ArgIleSerLeuValLeuSerMetMetAlaValSerSer : 313 302 bp {||}|||! !! !!!!:!!!!! !!!: !.!!.!! ! ! +-{rg}ArgSerIlePheMetPheLeuIleCysGlyAlaMetVal 11190 : ...............aa{GG}CGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTT : 12527 314 : GlnLeuLeuMetPheSerTyrCysTrpAspGlyLeuMetArgGluSerGlyAsnIleGly : 333 !|||!!!||||||!!!||| !!!! :!! !:!!!!:..!:!!|||! !||||||!.! LeuLeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAla 12528 : TTATTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCT : 12587 334 : GlnAlaAlaPheAlaGlyProTrpPheValAlaLysMetAsnGluGlyGlyArgAlaLeu : 353 ||||||!:!:!!!.!! !||| ! ! ! !||||||:!! !|||!:! !||| PheAlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeu 12588 : TTTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTA : 12647 354 : ArgGluAspValLeuIleIleIleMetArgAlaAsnLysAlaCysCysLeuThrAlaGly : 373 |||.!.|||:!!:!!!!::!!||| !|||:!!!..::!!.!|||||||||||||||..! ArgHisAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsn 12648 : CGGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAAT : 12707 374 : GlyPhePheProValSerLeuGluThrPheThrAla >>>> Target Intron 2 > : 386 |||||||||||||||||||||||||||!:!|||.!! 359 bp GlyPhePheProValSerLeuGluThrTyrThrThr++ 12708 : GGATTTTTCCCTGTGTCCTTAGAAACTTATACTACGgt...................... : 12748 387 : >>> ValLeuSerThrAlaValSerTyrPheThrLeuLeuArgAsnSerAlaProAspL : 404 :::||||||||||||!.!||||||||||||||||||||||||!:!!.! !|||: ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnValGluAspV 12749 : ...agattttgAGTACCGCGGCGTCGTACTTCACATTATTGAGAAATAACGTAGAAGATG : 13159 405 : euIleLys : 406 !!:!!||| alValLys 13160 : TAGTTAAA : 13167 vulgar: gi|383857305|ref|XP_003704145.1| 187 406 . KQ414828.1 10840 13167 + 449 M 39 117 G 0 6 M 68 204 G 0 3 M 5 15 S 0 1 5 0 2 I 0 1298 3 0 2 S 1 2 M 85 255 5 0 2 I 0 355 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10841 13167 449 + . gene_id 4 ; sequence gi|383857305|ref|XP_003704145.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 10841 11186 . + . KQ414828.1 exonerate:protein2genome:local exon 10841 11186 . + . insertions 9 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 11187 11188 . + . intron_id 1 ; splice_site "CT" KQ414828.1 exonerate:protein2genome:local intron 11187 12488 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12487 12488 . + . intron_id 0 ; splice_site "AA" KQ414828.1 exonerate:protein2genome:local cds 12489 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12489 12745 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13104 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13103 13104 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 13105 13167 . + . KQ414828.1 exonerate:protein2genome:local exon 13105 13167 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10841 13167 449 + . alignment_id 4 ; Query gi|383857305|ref|XP_003704145.1| ; Align 10841 188 117 ; Align 10964 227 204 ; Align 11171 295 15 ; Align 12491 301 255 ; Align 13105 386 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857305|ref|XP_003704145.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 439 Query range: 150 -> 405 Target range: 37459 -> 39223 151 : AsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnLeuTrpIleAspPhePro : 170 |||:!!|||||||||||||||!!:||| !! ! !!:!:!!:!!|||:!!|||.!.||| AsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuPro 37460 : AATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCA : 37517 171 : ThrGlyMetSerProTyrPheGluValPhePheThrIleGln >>>> Target Intr : 185 !..!!!:!!!||||||:::|||::: ::!! !|||||| 307 bp LeuSerIleThrProTyrTyrGluIleThrTyrIleIleGln++ 37518 : TTATCCATAACAccatattatgaaattacttACATAATACAGgt................ : 37564 186 : on 1 >>>> IleLeuCysValTyrHisValAlaIleSerTyrPheCysPheAspAsnP : 201 !|||! !||||||!!.|||::! !!!|||.!!||||||||| . ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleI 37565 : .........agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatca : 37917 202 : heLeuCysIleLeuCysLeuAsnIleThrGlyGlnPheArgIleLeuGlnHisArgLeuA : 221 ..... ||||||||||||:!!:!:.!!|||||||||||||||||||||:!!|||:!! lePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleA 37918 : tttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTG : 37977 222 : rgSerLeuAlaSerMet<->GlnThrCysGluGlnAsnLeuAsnArgSerArgThrLysS : 240 !!:!:!!:!!.!!:!: :!!! ! :!!...!:! !|||! !|||! ! !:!!! laAsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSerThrAspGluL 37978 : CCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAAT : 38037 241 : erAlaIleGluArg<->LeuIleLysLeuLysSerCysIleArgHisHisGlnAlaLeuI : 259 ! ! !|||!:! ! !||||||!!!|||!:!||||||!:!!!.||||||||||||| euTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuI 38038 : TATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAA : 38097 260 : leAsnTyrCysArgLysLeuGluAsnValPheThrLeuIleIleLeuGlyGluIleLeuP : 279 ||.!.!:!||| !! !||||||.!.|||||||||:!!||| !||||||:!!:!!|||. leGluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnValLeuM 38098 : TTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCTAA : 38157 280 : heValAlaLeuLeuLeuCysCysLeuGlyPheGlnValPheLeuMetPheThrProProA : 299 !. !!::!:!!|||:!!|||! !:!!! !!:!|||!.!.!!|||:!! !! ! !! ! etPheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeuValSerIleValArgT 38158 : TGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGGTGAGTATCGTTCGCT : 38217 300 : laArgArgIleSerLeuValLeu{S} >>>> Target Intron 2 >>>> {er}M : 308 !!.!!:! !|||:::::: {:} 283 bp {!!}| yrAsnLysTyrSerMetIleGlu{A}-- +-{la}M 38218 : ATAATAAATACTCTatgatagaa{g}aa.........................aa{CG}A : 38527 309 : etMetAlaValSerSerGlnLeuLeuMetPheSerTyrCysTrpAspGlyLeuMetArgG : 328 ||! !!.!|||||| ||||||! !||||||!!!||| !!!! ||| !!:!!! ! !| etThrGlyValSer---GlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrG 38528 : TGACGGGCGTGAGT---CAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAG : 38584 329 : luSerGlyAsnIleGlyGlnAlaAlaPheAlaGlyProTrpPheValAlaLysMetAsnG : 348 ||||| !||||||!.!:!!:!!!.!!:!||||||||||||.!. ! ! !|||:::: luSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspL 38585 : AAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggata : 38644 349 : luGlyGlyArgAlaLeuArgGluAspValLeuIleIleIleMetArgAlaAsnLysAlaC : 368 :: |||::: ||||||:!!|||:!!! !:!::!!|||:!!||||||!..::! !!! ysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProS 38645 : aatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTT : 38704 369 : ysCysLeuThrAlaGlyGlyPhePheProValSerLeuGluThrPheThrAlaValLeu{ : 388 !! !||||||||| !!||||||||| !!:!!|||||||||||||||||| !|||!!!{ erSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysValPhe{ 38705 : CCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTATTT{ : 38764 389 : Se} >>>> Target Intron 3 >>>> {r}ThrAlaValSerTyrPheThrLeuL : 397 !:} 406 bp {!}|||:!!:!!|||||||||||||||| As}-+ ++{n}ThrSerMetSerTyrPheThrLeuL 38765 : AA}at.........................ag{T}ACATCAATGTCGTATTTCACATTAT : 39197 398 : euArgAsnSerAlaProAspLeuIle : 405 ||!:!.!.||| ! !||| !:!! euLysGlnSerIleAspAspThrVal 39198 : TAAAACAAAGTATCGACGACACGGTA : 39223 vulgar: gi|383857305|ref|XP_003704145.1| 150 405 . KQ414828.1 37459 39223 + 439 M 34 102 5 0 2 I 0 303 3 0 2 M 42 126 G 0 3 M 18 54 G 0 3 M 62 186 S 0 1 5 0 2 I 0 279 3 0 2 S 1 2 M 5 15 G 1 0 M 74 222 S 0 2 5 0 2 I 0 402 3 0 2 S 1 1 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37460 39223 439 + . gene_id 5 ; sequence gi|383857305|ref|XP_003704145.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37460 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37460 37561 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 38241 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 38241 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 38242 38243 . + . intron_id 2 ; splice_site "aa" KQ414828.1 exonerate:protein2genome:local intron 38242 38524 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 38523 38524 . + . intron_id 1 ; splice_site "AA" KQ414828.1 exonerate:protein2genome:local cds 38525 38765 . + . KQ414828.1 exonerate:protein2genome:local exon 38525 38765 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 38766 38767 . + . intron_id 3 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 38766 39171 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 39170 39171 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 39172 39223 . + . KQ414828.1 exonerate:protein2genome:local exon 39172 39223 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37460 39223 439 + . alignment_id 5 ; Query gi|383857305|ref|XP_003704145.1| ; Align 37460 151 102 ; Align 37869 185 126 ; Align 37998 227 54 ; Align 38055 245 186 ; Align 38527 308 15 ; Align 38542 314 222 ; Align 39173 389 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857305|ref|XP_003704145.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 376 Query range: 183 -> 386 Target range: 22722 -> 23829 184 : GlnIleLeuCysValTyrHisValAlaIleSerTyrPheCysPheAspAsnPheLeuCys : 203 ||| !|||! !||||||!!.|||::! !!!|||.!!||||||||| ...... GlnAlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIlePhePhe 22723 : CAGGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatttttttc : 22780 204 : IleLeuCysLeuAsnIleThrGlyGlnPheArgIleLeuGlnHisArgLeuArgSerLeu : 223 ||||||||||||:!!:!:.!!|||||||||||||||||||||:!!|||:!! !!:!:!! IleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnVal 22781 : attttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTG : 22840 224 : AlaSerMet<->GlnThrCysGluGlnAsnLeuAsnArgSerArgThrLysSerAlaIle : 242 :!!.!!:!: :!!! ! :!!...!:! !|||! !|||! ! !:!!! ! ! ! SerGlyLeuSerGluIleValLysSerSerGluAsnProSerThrAspGluLeuTyrSer 22841 : TCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAATTATACTCA : 22900 243 : GluArg<->LeuIleLysLeuLysSerCysIleArgHisHisGlnAlaLeuIleAsnTyr : 261 |||!:! ! !||||||!!!|||!:!||||||!:!!!.|||||||||||||||.!.!:! GluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPhe 22901 : GAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAATTT : 22960 262 : CysArgLysLeuGluAsnValPheThrLeuIleIleLeuGlyGluIleLeuPheValAla : 281 ||| !! !||||||.!.|||||||||:!!|||:!!||||||:!!:!!|||.!. !::! CysAlaThrLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMetSerSer 22961 : TGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCTAATGTCTAGC : 23020 282 : LeuLeuLeuCysCysLeuGlyPheGlnValPheLeuMetPheThrProProAlaArgArg : 301 :!!|||:!!|||! !:!!|||!:!||||||.!!|||:!! !! ! ! ! !!.!!:! IleLeuIleCysPheIleGlyTyrGlnValLeuLeuValSerIleGluSerTyrAsnLys 23021 : ATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGGTGAGTATCGAAAGCTATAATAAA : 23080 302 : Ile{S} >>>> Target Intron 1 >>>> {er}LeuValLeuSerMetMetAla : 310 !{|} 492 bp {||}!!!!.!! !! !:!!||| ! Tyr{S}++ -+{er}PheAlaCysPheLeuMetMet 23081 : TAC{T}gt.........................tg{CT}TTCGCGTGCTTCTTGATGATG : 23599 311 : ValSerSerGlnLeuLeuMetPheSerTyrCysTrpAspGlyLeuMetArgGluSerGly : 330 ! !! !|||||||||! !||||||!!!||| !!!! ||| !!:!!! ! !|||||| ! GlyMetSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeu 23600 : GGCATGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCATAACAACAGAAAGCCTG : 23659 331 : AsnIleGlyGlnAlaAlaPheAlaGlyProTrpPheValAlaLysMetAsnGluGlyGly : 350 ||||||!.!:!!:!!!.!!:!||||||||||||.!. ! ! !|||:!!:!! !||| AsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGly 23660 : AACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATGGACAAATTTGGA : 23719 351 : ArgAlaLeuArgGluAspValLeuIleIleIleMetArgAlaAsnLysAlaCysCysLeu : 370 !:! !||||||:!!!!::!!! !!!::!!|||:!!||||||!..::! !!! !..!||| LysLeuLeuArgLysGluLeuGlnMetLeuIleLeuArgAlaArgArgProSerAlaLeu 23720 : AAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTG : 23779 371 : ThrAlaGlyGlyPhePheProValSerLeuGluThrPheThrAlaVal : 386 |||||| !!||||||||| !!:!!|||||||||||||||||| !||| ThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 23780 : ACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 23829 vulgar: gi|383857305|ref|XP_003704145.1| 183 386 . KQ414828.1 22722 23829 + 376 M 43 129 G 0 3 M 18 54 G 0 3 M 58 174 S 0 1 5 0 2 I 0 488 3 0 2 S 1 2 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22723 23829 376 + . gene_id 6 ; sequence gi|383857305|ref|XP_003704145.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22723 23086 . + . KQ414828.1 exonerate:protein2genome:local exon 22723 23086 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23087 23088 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23087 23578 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 23577 23578 . + . intron_id 0 ; splice_site "TG" KQ414828.1 exonerate:protein2genome:local cds 23579 23829 . + . KQ414828.1 exonerate:protein2genome:local exon 23579 23829 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22723 23829 376 + . alignment_id 6 ; Query gi|383857305|ref|XP_003704145.1| ; Align 22723 184 129 ; Align 22855 227 54 ; Align 22912 245 174 ; Align 23581 304 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857305|ref|XP_003704145.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 229 Query range: 300 -> 407 Target range: 28526 -> 29257 301 : ArgIleSerLeuValLeuSerMetMetAlaValSerSerGlnLeuLeuMetPheSerTyr : 320 |||:!!:!!|||!.!! !! ! !|||.!!! ! !|||||||||! !||||||!!!||| ArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuTrpMetPheThrTyr 28527 : CGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTATGGATGTTCACGTAC : 28584 321 : CysTrpAspGlyLeuMetArgGluSerGlyAsnIleGlyGlnAlaAlaPheAlaGlyPro : 340 !!!! ||| !!:!!! ! !|||||| !||||||!.!:!!:!!!.!!:!||||||||| SerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyPro 28585 : AGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCA : 28644 341 : TrpPheValAlaLysMetAsnGluGlyGlyArgAlaLeuArgGluAspValLeuIleIle : 360 |||.!. ! ! !|||:::::: |||::: ||||||:!!|||:!!! !:!::!! TrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeu 28645 : TGGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTC : 28704 361 : IleMetArgAlaAsnLysAlaCysCysLeuThrAlaGlyGlyPhePheProValSerLeu : 380 |||:!!||||||!..::! !!! !! !||||||||| !!||||||||| !!:!!|||||| IleLeuArgAlaArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeu 28705 : ATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTC : 28764 381 : GluThrPheThrAla >>>> Target Intron 1 >>>> ValLeuSerThrAlaV : 391 |||||||||||| ! 410 bp :!!:!!||||||:!!: GluThrPheThrLys++ ++IleMetSerThrSerM 28765 : GAAACCTTTACTAAGgt.........................agATCATGAGTACATCAA : 29207 392 : alSerTyrPheThrLeuLeuArgAsnSerAlaProAspLeuIleLysThr : 407 !!||||||||||||||||||!:!.!.!!! ! !||| !:!!!!.:!! etSerTyrPheThrLeuLeuLysGlnCysIleGluAspThrValAsnSer 29208 : TGTCGTATTTCACATTATTAAAACAATGTATCGAGGACACGGTTAATTCG : 29257 vulgar: gi|383857305|ref|XP_003704145.1| 300 407 . KQ414828.1 28526 29257 + 229 M 85 255 5 0 2 I 0 406 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28527 29257 229 + . gene_id 7 ; sequence gi|383857305|ref|XP_003704145.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 28527 28781 . + . KQ414828.1 exonerate:protein2genome:local exon 28527 28781 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 28782 28783 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 28782 29191 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 29190 29191 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 29192 29257 . + . KQ414828.1 exonerate:protein2genome:local exon 29192 29257 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28527 29257 229 + . alignment_id 7 ; Query gi|383857305|ref|XP_003704145.1| ; Align 28527 301 255 ; Align 29192 386 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857305|ref|XP_003704145.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 0 -> 64 Target range: 15100 -> 15292 1 : MetArgLeuLeuHisSerLysAspArgSerIleIleTrpThrLeuPheLeuIleLysVal : 20 |||!!! !!!! !!!! ! |||! !||||||! ! !|||! ! !!!!!!!:|||:!! MetSerSerPheThrThrAspAspIleSerIleSerLeuThrSerValPheMetLysIle 15101 : ATGAGTAGTTTCACCACCGATGACATATCAATCAGCCTGACGTCCGTTTTCATGAAGATC : 15158 21 : ValGlyIleTrpIleAlaAsnAsnArgAlaGluGlnLeuArgArgAsnLeuAlaLeuVal : 40 ||||||:!:|||!!:|||:::|||||| !||||||! ! !||||||:!!.!!||| ! ValGlyLeuTrpMetAlaSerAsnArgPheGluGlnArgValArgAsnIleThrLeuCys 15159 : GTTGGACTGTGGATGGCGTCGAACCGTTTCGAGCAACGAGTACGAAATATCACGCTGTGT : 15218 41 : TyrThrLeuThrAlaLeuSerIleAlaMetGlyIleAlaLeuArgAspLeuHisPheSer : 60 |||||||||! !|||:!! !.!!|||:!! !!||| !:!!! !||||||:!!!:!||| TyrThrLeuIleAlaIleLeuPheAlaLeuTrpIleGlnMetThrAspLeuTyrTyrSer 15219 : TACACGCTGATCGCGATTCTCTTCGCCCTGTGGATACAAATGACGGATTTGTATTACTCG : 15278 61 : TrpGlyAsnPhe : 64 ||||||:!!||| TrpGlyAspPhe 15279 : TGGGGAGATTTT : 15292 vulgar: gi|383857305|ref|XP_003704145.1| 0 64 . KQ414828.1 15100 15292 + 147 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15101 15292 147 + . gene_id 8 ; sequence gi|383857305|ref|XP_003704145.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 15101 15292 . + . KQ414828.1 exonerate:protein2genome:local exon 15101 15292 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15101 15292 147 + . alignment_id 8 ; Query gi|383857305|ref|XP_003704145.1| ; Align 15101 1 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857305|ref|XP_003704145.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 0 -> 64 Target range: 31105 -> 31297 1 : MetArgLeuLeuHisSerLysAspArgSerIleIleTrpThrLeuPheLeuIleLysVal : 20 |||!!!||| !:!! !!:!!||| !|||.!!! !! .!! !|||!!!:!: ! ||| MetSerLeuLysTyrArgGlnAspValSerPheArgLeuAlaAsnPhePheLeuTyrVal 31106 : ATGAGCTTGAAATATCGTCAAGACGTTTCCTTTAGATTAGCCAACTTTTTTCTGTATGTT : 31163 21 : ValGlyIleTrpIleAlaAsnAsnArgAlaGluGlnLeuArgArgAsnLeuAlaLeuVal : 40 ||||||.!!|||.!!||| !|||||| !|||:!!! ! !|||||| !|||:!!:!! ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeu 31164 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCTGCGATTCTG : 31223 41 : TyrThrLeuThrAlaLeuSerIleAlaMetGlyIleAlaLeuArgAspLeuHisPheSer : 60 ||||||:!!..!.!!:!!! !.!!!.!||| !!:!! !||||||! |||:!!|||||| TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSer 31224 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGGCTTTATTTCTCC : 31283 61 : TrpGlyAsnPhe : 64 |||||||||||| TrpGlyAsnPhe 31284 : TGGGGAAACTTT : 31297 vulgar: gi|383857305|ref|XP_003704145.1| 0 64 . KQ414828.1 31105 31297 + 139 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31106 31297 139 + . gene_id 9 ; sequence gi|383857305|ref|XP_003704145.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 31106 31297 . + . KQ414828.1 exonerate:protein2genome:local exon 31106 31297 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31106 31297 139 + . alignment_id 9 ; Query gi|383857305|ref|XP_003704145.1| ; Align 31106 1 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857305|ref|XP_003704145.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 0 -> 64 Target range: 21030 -> 21222 1 : MetArgLeuLeuHisSerLysAspArgSerIleIleTrpThrLeuPheLeuIleLysVal : 20 |||!!!||| !:!! !!:!!||| !|||:!!! !! .!! !|||! !:!: ! ||| MetSerLeuLysTyrArgGlnAspValSerValArgLeuAlaAsnPheTyrLeuTyrVal 21031 : ATGAGCTTGAAATATCGCCAAGACGTTTCCGTTAGATTAGCCAATTTTTATCTGTATGTC : 21088 21 : ValGlyIleTrpIleAlaAsnAsnArgAlaGluGlnLeuArgArgAsnLeuAlaLeuVal : 40 ||||||.!!|||.!!||| !|||||| !|||:!!! ! ! !!||| !|||:!!:!! ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheGlyAsnAlaAlaIleLeu 21089 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCGGAAACGCGGCGATTCTG : 21148 41 : TyrThrLeuThrAlaLeuSerIleAlaMetGlyIleAlaLeuArgAspLeuHisPheSer : 60 ||||||:!!..!.!!:!!! !.!!!.!||| !!:!! !||||||! |||:!!|||||| TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSer 21149 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGAGAGGACTTTATTTCTCC : 21208 61 : TrpGlyAsnPhe : 64 |||||||||||| TrpGlyAsnPhe 21209 : TGGGGAAACTTT : 21222 vulgar: gi|383857305|ref|XP_003704145.1| 0 64 . KQ414828.1 21030 21222 + 134 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21031 21222 134 + . gene_id 10 ; sequence gi|383857305|ref|XP_003704145.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 21031 21222 . + . KQ414828.1 exonerate:protein2genome:local exon 21031 21222 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21031 21222 134 + . alignment_id 10 ; Query gi|383857305|ref|XP_003704145.1| ; Align 21031 1 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857305|ref|XP_003704145.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 0 -> 64 Target range: 26060 -> 26252 1 : MetArgLeuLeuHisSerLysAspArgSerIleIleTrpThrLeuPheLeuIleLysVal : 20 |||!!!||| !:!! !!:!!||| !|||:!!! !! .!! !|||!!!:!: ! ||| MetSerLeuLysTyrArgGlnAspValSerValArgLeuAlaAsnPhePheLeuTyrVal 26061 : ATGAGCTTGAAATATCGTCAAGACGTTTCCGTTAGATTAGCCAACTTTTTTCTGTATGTC : 26118 21 : ValGlyIleTrpIleAlaAsnAsnArgAlaGluGlnLeuArgArgAsnLeuAlaLeuVal : 40 ||||||.!!|||.!!||| !|||||| !|||:!!! ! !|||||| !|||:!!:!! ValGlyPheTrpPheAlaAlaAsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeu 26119 : GTCGGCTTCTGGTTCGCCGCTAATCGTATAGAGGAATGGTTCAGAAACGCGGCGATTCTG : 26178 41 : TyrThrLeuThrAlaLeuSerIleAlaMetGlyIleAlaLeuArgAspLeuHisPheSer : 60 ||||||:!!..!.!!:!!! !.!!!.!||| !!:!! !||| !!! |||:!!|||:!! TyrThrIleValThrValPhePheValMetTrpLeuGlnLeuGlyGlyLeuTyrPheAla 26179 : TATACCATTGTCACGGTCTTCTTTGTCATGTGGCTTCAGCTGGGAGGGCTTTATTTCGCC : 26238 61 : TrpGlyAsnPhe : 64 |||||||||||| TrpGlyAsnPhe 26239 : TGGGGAAACTTT : 26252 vulgar: gi|383857305|ref|XP_003704145.1| 0 64 . KQ414828.1 26060 26252 + 132 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26061 26252 132 + . gene_id 11 ; sequence gi|383857305|ref|XP_003704145.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 26061 26252 . + . KQ414828.1 exonerate:protein2genome:local exon 26061 26252 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 26061 26252 132 + . alignment_id 11 ; Query gi|383857305|ref|XP_003704145.1| ; Align 26061 1 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857305|ref|XP_003704145.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 147 -> 189 Target range: 27339 -> 27465 148 : PheValGluAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnLeuTrpIle : 167 ...::: |||:!!|||||||||||||||!!:||| !! ! !|||:!!:!!|||.!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPhe 27340 : attttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTC : 27397 168 : AspPheProThrGlyMetSerProTyrPheGluValPhePheThrIleGlnIleLeuCys : 187 |||.!.||| !..!:!:!!!||||||:::|||::: ::!! !||||||:!!||| AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 27398 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 27457 188 : ValTyr : 189 :!!!:! IlePhe 27458 : ATTTTC : 27465 vulgar: gi|383857305|ref|XP_003704145.1| 147 189 . KQ414828.1 27339 27465 + 110 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27340 27465 110 + . gene_id 12 ; sequence gi|383857305|ref|XP_003704145.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27340 27465 . + . KQ414828.1 exonerate:protein2genome:local exon 27340 27465 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27340 27465 110 + . alignment_id 12 ; Query gi|383857305|ref|XP_003704145.1| ; Align 27340 148 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857305|ref|XP_003704145.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 147 -> 189 Target range: 22307 -> 22433 148 : PheValGluAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnLeuTrpIle : 167 ...::: |||:!!|||||||||||||||!!:||| !! ! !!:!:!!:!!|||:!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 22308 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 22365 168 : AspPheProThrGlyMetSerProTyrPheGluValPhePheThrIleGlnIleLeuCys : 187 |||.!.||| !..!:!:!!!||||||:::|||::: ::!! !||||||:!!||| AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 22366 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 22425 188 : ValTyr : 189 :!!!:! IlePhe 22426 : ATTTTC : 22433 vulgar: gi|383857305|ref|XP_003704145.1| 147 189 . KQ414828.1 22307 22433 + 109 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22308 22433 109 + . gene_id 13 ; sequence gi|383857305|ref|XP_003704145.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 22308 22433 . + . KQ414828.1 exonerate:protein2genome:local exon 22308 22433 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22308 22433 109 + . alignment_id 13 ; Query gi|383857305|ref|XP_003704145.1| ; Align 22308 148 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 856 Query range: 7 -> 403 Target range: 31126 -> 34310 8 : AspLeuSerIleThrLeuSerThrPheCysMetLysTyrAlaGlyLeuTrpThrAlaLys : 27 |||:!!|||.!!! !|||:!!!.!|||! !:!! ! !!.!|||!!!||| !||| AspValSerPheArgLeuAlaAsnPhePheLeuTyrValValGlyPheTrpPheAlaAla 31127 : GACGTTTCCTTTAGATTAGCCAACTTTTTTCTGTATGTTGTCGGCTTCTGGTTCGCCGCT : 31184 28 : AsnTyrAlaGluGluArgArgArgLysLeuGlyIleThrTyrSerIleTyrIleLeuCys : 47 ||| ! !|||||| !! !|||!!. !!.!||| !|||!!!||| !! :!!! ! AsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeuTyrThrIleValThrValPhe 31185 : AATCGTATAGAGGAATGGTTCAGAAACGCTGCGATTCTGTATACCATTGTCACGGTCTTC : 31244 48 : PheAlaMetPhePheGluIleArgAspLeuTyrPheSerTrpGlyAspLeuSer >>>> : 66 |||!.!|||!::.!!:!!:!:|||! ||||||||||||||||||:!!!!!..! PheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSerTrpGlyAsnPheGlu++ 31245 : TTTGTCATGTGGCTTCAGCTGAGAGGGCTTTATTTCTCCTGGGGAAACTTTGAAgt.... : 31303 67 : Target Intron 1 >>>> AlaAlaLeuTyrValAlaCysAsnLeuSerIleValA : 78 670 bp !.!..!:!!|||:!!||||||||| !! ! !:!!! ++ValCysMetTyrMetAlaCysAsnSerIleAlaLeuV 31304 : .....................agGTTTGCATGTACATGGCATGCAACAGTATAGCCCTGG : 32007 79 : laLeuThrSerPheLysValPheIleLeuValLeuTyrArgSerGluLeuAlaAspLeuI : 98 .!||| !! !.!!|||:!!|||:!!||||||:!! !:!!.!:!!!!! !! !|||| alLeuAspIleIleLysIlePheValLeuValValArgLysLysLysPheLeuGlyLeuI 32008 : TTTTGGATATAATCAAGATTTTCGTCCTAGTCGTACGGAAGAAAAAGTTTCTCGGTCTGA : 32067 99 : leLeuTyrMetGlnGluHisPheTrpHisCysGluTyrAspGluArgGluLysAlaIleL : 118 || !|||||||||::::::|||:::||| ...||||||:!! !|||!!.:!!|||: leGluTyrMetGlnLysAsnPhePheHisLeuAsnTyrAspGlnAspGluAsnSerIleI 32068 : TTGAGTACATgcagaagaatttctttcatttgaaCTACGATCAGGACGAGAATTCTATTA : 32127 119 : euAlaSerCysArgLysThrCysIlePhePheThrIleSerValThrPheIleGlyGluC : 138 !!||| !...!:!::!|||||||||!:!|||..! ! ! !!:!!||| !..!:!!! leAlaHisAlaLysArgThrCysIleTyrPheValCysValPheSerPheCysSerGlnS 32128 : TCGCACACGCGAAACGAACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTTCTCAAT : 32187 139 : ysAlaValPheSerTyrLeuValThrProIleVal{V} >>>> Target Intron 2 : 150 !.!!||||||||||||:!!:!!! !|||.!!|||{ } 170 bp erThrValPheSerTyrIleIleArgProPheVal{S}++ 32188 : CTACAGTTTTTTCCTATATAATAAGGCCATTTGTA{T}gt.................... : 32226 151 : >>>> {al}AsnLeuGlyGlyAsnGlyThrValArgLeuHisProPheAsnMetTrpL : 167 { !}||||||||| !|||! !:!!! !||| !||| !!:!:!!||||||| ++{er}AsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpL 32227 : .....ag{ca}AATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGC : 32444 168 : euAspAlaValLeu<->IleThrProTyrPheGluIleAlaPhePheGlyGln >>>> : 184 ||||| ! !||| :!!|||||||||:::||||||...::!.!. !||| euAspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGln++ 32445 : TCGATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGgt..... : 32500 185 : Target Intron 3 >>>> IleLeuIleLeuPheHisIleGlySerCysTyrPheCy : 196 307 bp !||| !:!!!:!!!.:!!||| !||||||.!!|| ++AlaLeuSerValTyrGlnValGlyValCysTyrLeuCy 32501 : ....................agGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTG : 32841 197 : sPheAspAsnMetPheSerIlePheCysLeuHisLeuAlaThrGlnPheArgIleLeuGl : 216 ||||||||||:::||| |||...|||||||||:!!||| !||||||||||||||||| sPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGl 32842 : CTttgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACA : 32901 217 : nTyrArgPheGluThrMetCysGluIleSerGluGluThrValHisAlaTyrLeuLysPh : 236 |||||||.!!! !.!:!!! ! :!!|||||| !..! ! ! ! !! !! ! nTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerAsnAspAsnThrSe 32902 : ATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACAAG : 32961 237 : eSerProThrAsnTyrAlaValAspValTyrGlnLysPheLysValTyrValGlnGlnHi : 256 !!!! !! ! |||:!!! ! ! !||| ||||||||| !! !:!!|||||||| rThrAlaGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHi 32962 : CACGGCTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACA : 33021 257 : sGlnAlaLeuIleAspTyrSerThrLeuLeuGluArgValPheThrLeuIleThrPheGl : 276 |||||||||||||:::::: :::||||||..!|||||||||:!!|||..!.!!|| sGlnAlaLeuIleGluPheCysGluIleLeuGluGluValPheThrValIleValLeuGl 33022 : TCAGGCACTaattgaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGG : 33081 277 : yGlnValMetPhePheSerValLeuIleCysLeuPheGlyTyrGlnIleValMet >>> : 295 |||||||:!:.!.||||||:!!:!!||||||!!! !||||||:!!:!!:!!:!! yGlnValLeuMetPheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeu++ 33082 : ACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGgt... : 33140 296 : > Target Intron 4 >>>> AlaAspSerThrProGluArgArgThrIlePheIle : 306 406 bp ! ! ! !! !||| !|||..! !|||! ++IleThrLeuProPheGluSerArgValAlaPheThr 33141 : ......................agATAACGTTACCATTTGAATCGCGCGTTGCTTTCACG : 33577 307 : CysLeuThrValGlySerThrSerLeuLeuPheMetPheThrTyrSerCysHisGlyLeu : 326 |||!!! !:!! !.!!..!|||! !|||!::||||||||||||||||||:!! !!:!! CysPheLeuIleThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAsnCysIle 33578 : TGCTTCTTGATTACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCAATTGCATA : 33637 327 : MetGluGlnSerAspLeuLeuAlaAspAlaMetTyrSerThrMetTrpThrArgIlePro : 346 ! !:!!||| !:!!|||!!::!!:!!|||:!! ! |||! !!.!:!!||| ThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuPro 33638 : ACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCA : 33697 347 : MetAsnLysTyrGlyLysMetLeuArgAsnAspLeuMetMetValIleLeuArgAlaArg : 366 |||:::|||:::||||||:::||||||!!.||||||...:!!:!!||||||||||||||| MetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArg 33698 : ATggataaatttggaaaactgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGAGA : 33757 367 : ArgThrCysCysIleThrAlaAsnGlyPhePheProValSerLeuGluThrPheThrThr : 386 ||| !!! !..!:!:|||||| !||||||||| !!:!!!!!|||||||||||||||! ! ArgProSerAlaLeuThrAlaCysGlyPhePheSerIleThrLeuGluThrPheThrLys 33758 : CGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTACTAAG : 33817 387 : >>>> Target Intron 5 >>>> IleLeuSerThrAlaAlaSerTyrPheThrL : 397 440 bp |||:!!||||||:!! !||||||||||||| ++ ++IleMetSerThrSerMetSerTyrPheThrL 33818 : gt.........................agATCATGAGTACATCAATGTCGTATTTCACCC : 34290 398 : euLeuArgAsnSerValGlu : 403 |||||!:!.!.|||!.!||| euLeuLysGlnSerAlaGlu 34291 : TACTAAAACAAAGTGCCGAG : 34310 vulgar: gi|383857331|ref|XP_003704158.1| 7 403 . KQ414828.1 31126 34310 + 856 M 58 174 5 0 2 I 0 666 3 0 2 M 84 252 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 21 63 G 0 3 M 12 36 5 0 2 I 0 303 3 0 2 M 111 333 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31127 34310 856 + . gene_id 1 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 31127 31300 . + . KQ414828.1 exonerate:protein2genome:local exon 31127 31300 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 31301 31302 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 31301 31970 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 31969 31970 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 31971 32223 . + . KQ414828.1 exonerate:protein2genome:local exon 31971 32223 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32224 32225 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32224 32393 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 32392 32393 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 32394 32497 . + . KQ414828.1 exonerate:protein2genome:local exon 32394 32497 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32498 32499 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32498 32804 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 32803 32804 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32805 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32805 33137 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 5 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34310 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34310 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31127 34310 856 + . alignment_id 1 ; Query gi|383857331|ref|XP_003704158.1| ; Align 31127 8 174 ; Align 31971 66 252 ; Align 32396 151 63 ; Align 32462 172 36 ; Align 32805 184 333 ; Align 33544 295 276 ; Align 34260 387 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 848 Query range: 7 -> 403 Target range: 15121 -> 19906 8 : AspLeuSerIleThrLeuSerThrPheCysMetLysTyrAlaGlyLeuTrpThrAlaLys : 27 |||:!!||||||!:!|||!!!:!! !!! !|||||| !!.!|||||||||! !|||..! AspIleSerIleSerLeuThrSerValPheMetLysIleValGlyLeuTrpMetAlaSer 15122 : GACATATCAATCAGCCTGACGTCCGTTTTCATGAAGATCGTTGGACTGTGGATGGCGTCG : 15179 28 : AsnTyrAlaGluGluArgArgArgLysLeuGlyIleThrTyrSerIleTyrIleLeuCys : 47 ||| ! !|||:!!||| !|||!!.:!! !:!: !|||!!!:!: ! :!! ! AsnArgPheGluGlnArgValArgAsnIleThrLeuCysTyrThrLeuIleAlaIleLeu 15180 : AACCGTTTCGAGCAACGAGTACGAAATATCACGCTGTGTTACACGCTGATCGCGATTCTC : 15239 48 : PheAlaMetPhePheGluIleArgAspLeuTyrPheSerTrpGlyAspLeuSer >>>> : 66 ||||||:!!!::.!.:!!!!:! !|||||||||!:!||||||||||||!!!.!! PheAlaLeuTrpIleGlnMetThrAspLeuTyrTyrSerTrpGlyAspPheGly++ 15240 : TTCGCCCTGTGGATACAAATGACGGATTTGTATTACTCGTGGGGAGATTTTGGTgt.... : 15298 67 : Target Intron 1 >>>> AlaAlaLeuTyrValAlaCysAsnLeuSerIleValA : 78 891 bp |||..!||||||..!|||||||||:!!! ! :!!. ++AlaCysLeuTyrThrAlaCysAsnIleLeuSerLeuT 15299 : .....................agGCCTGTTTATATACTGCATGCAACATTTTATCGTTAA : 16223 79 : laLeuThrSerPheLysValPheIleLeuValLeuTyrArgSerGluLeuAlaAspLeuI : 98 !!:!! !!! !.!!|||:!!.!!:!!|||:!! !::::::::::::... |||| hrIleProPheLeuLysIleLeuValLeuLeuAlaHisLysAsnAspPhePheHisLeuI 16224 : CAATACCGTTTCTCAAGATACTCGTCTTGCTTGCAcacaaaaatgatttttttcatttga : 16283 99 : leLeuTyrMetGlnGluHisPheTrpHisCysGluTyrAspGluArgGluLysAlaIleL : 118 |||||:!!:!:|||..!.!.|||! !|||...!!:||||||!!: !|||||| !|||| leLeuHisLeuGlnArgGluPheLeuHisAlaAspTyrAspAspTyrGluLysLysIleL 16284 : ttcTGCACCTACAACGAGAATTCTTGCATGCAGATTACGACGACTACGAGAAAAAGATTT : 16343 119 : euAlaSerCysArgLysThrCysIlePhePheThrIleSerValThrPheIleGlyGluC : 138 || !.!!|||!:!::: !|||! !||||||..! !! ! !!|||.!!.!! !:!! euLeuGlyCysGlnArgGlnCysThrPhePheValCysPhePheThrLeuPheThrLysG 16344 : TGCTCGGTTGCCAACGTCAATGTACCTTCTTCGTTTGTTTCTTCACACTTTTCACTAAAG : 16403 139 : ysAlaValPheSerTyrLeuValThrProIleVal{V} >>>> Target Intron 2 : 150 ! .!!|||.!!||||||:!!|||!.!|||:!!:!!{!} 1386 bp lyThrValIleSerTyrIleValAsnProLeuIle{A}++ 16404 : GAACTGTTATCTCGTACATCGTTAATCCGCTTATT{G}gt.................... : 16442 151 : >>>> {al}AsnLeuGlyGlyAsnGlyThrValArgLeuHisProPheAsnMetTrpL : 167 {.!}|||:::||| ||| :!!! !|||:!!! !|||||||||||||||: ++{la}AsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpV 16443 : .....ag{ca}aatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGG : 17876 168 : euAspAlaValLeu<->IleThrProTyrPheGluIleAlaPhePheGlyGln >>>> : 184 !!:!! ! !||| !!:|||||||||!:!||||||...||| ||| alAsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln++ 17877 : TCAACTTGCCATTATCAATGACGCCATATTACgaaataactttttcattaCAGgt..... : 17932 185 : Target Intron 3 >>>> IleLeuIleLeuPheHisIleGlySerCysTyrPheCy : 196 110 bp ::!||| !|||!:!||||||||| ! !!|||||||| ++ValLeuSerLeuTyrHisIleGlyValSerTyrPheCy 17933 : ....................aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTg : 18076 197 : sPheAspAsnMetPheSerIlePheCysLeuHisLeuAlaThrGlnPheArgIleLeuGl : 216 ||||||||||...... |||.!. !|||||| !|||||||||||||||:!!||||| sPheAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGl 18077 : cttcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCA : 18136 217 : nTyrArgPheGluThrMetCysGluIleSerGlu<->GluThrValHisAlaTyrLeuLy : 235 |||||||.!.! !!.!||| !!!::!!!.!!:: ||| ... :::|| nTyrArgMetAlaAsnMetThrAspLeuLysAspLysGluArgLysGluArgAsnMetLy 18137 : ATACCGAATGGCGAATATGACCGATTTAAAGGacaaagagaggaaagagagaaatatgaA : 18196 236 : sPheSerProThrAsn<-><->TyrAlaValAspValTyrGlnLysPheLysValTyrVa : 253 | ||| !!:!::: !:!|||..!!!: !|||.!. .!!|||! !|||:! sThrSerValSerSerAlaCysPheAlaThrGluCysTyrAsnValLeuLysAspTyrIl 18197 : GACAAGTGTGAGTTCGGCGTGCTTTGCAACAGAATGTTACAACGTTCTCAAAGATTATAT : 18256 254 : lGlnGlnHisGlnAlaLeuIleAspTyrSerThrLeuLeuGluArgValPheThrLeuIl : 273 !::!||||||||| !||||||! !|||!!!!.! !||||||!:!||||||!.!:!!|| eArgGlnHisGlnAsnLeuIleAlaTyrCysAsnLysLeuGluLysValPheAsnIleIl 18257 : CAGACAGCATCAGAACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGTTCAATATCAT : 18316 274 : eThrPheGlyGlnValMetPhePheSerValLeuIleCysLeuPheGlyTyrGlnIleVa : 293 |..!.!.||||||:!!:!:.!.||||||:!!|||||||||||| !|||!:!||||||:! eValLeuGlyGlnLeuLeuMetPheSerMetLeuIleCysLeuAspGlyPheGlnIleLe 18317 : TGTTCTGGGGCAATTGTTAATGTTCAGCATGTTGATCTGTCTCGATGGATTTCAGATACT : 18376 294 : lMet >>>> Target Intron 4 >>>> AlaAspSerThrProGluArgArgThr : 303 !||| 975 bp |||:!!!!! !! !!..!! !||| ! uMet++ ++AlaAsnThrProThrArgThrArgLeu 18377 : TATGgt.........................agGCAAATACACCTACCAGAACCCGACTG : 19381 304 : IlePheIleCysLeuThrValGlySerThrSerLeuLeuPheMetPheThrTyrSerCys : 323 |||||||||! !! !! !! !!.!!!!! !!!!! !|||.!.|||||||||||||||||| IlePheIlePheHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSerCys 19382 : ATTTTCATCTTTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGCTGC : 19441 324 : HisGlyLeuMetGluGlnSerAspLeuLeuAlaAspAlaMetTyrSerThrMetTrpThr : 343 !! !!:!!!!:..!:!!||| ! !|||!!:|||:!!|||||| ! |||||| AspCysIleIleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyProTrpThr 19442 : GACTGCATCATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGACA : 19501 344 : ArgIleProMetAsnLysTyrGlyLysMetLeuArgAsnAspLeuMetMetValIleLeu : 363 ! !:!!||||||!:! ! !!|||||||||:!!|||!!.|||||||||:!:||||||:!! LeuLeuProMetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuValIleMet 19502 : CTTTTACCAATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCATG : 19561 364 : ArgAlaArgArgThrCysCysIleThrAlaAsnGlyPhePheProValSerLeuGluThr : 383 |||:!!!!! ! !!||||||:!:||||||!..||||||||| !||||||||||||||| ArgSerSerValProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGluThr 19562 : AGATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAACG : 19621 384 : PheThrThr >>>> Target Intron 5 >>>> IleLeuSerThrAlaAlaSerT : 394 !:!||| ! 223 bp :!!||||||||||||||||||| TyrThrGly++ ++ValLeuSerThrAlaAlaSerT 19622 : TACACAGGGgt.........................agGTTTTAAGCACCGCAGCCTCAT : 19877 395 : yrPheThrLeuLeuArgAsnSerValGlu : 403 ||||||||||||||!:!.!.!!! !||| yrPheThrLeuLeuLysGlnArgSerGlu 19878 : ACTTTACGTTGCTGAAGCAAAGATCAGAG : 19906 vulgar: gi|383857331|ref|XP_003704158.1| 7 403 . KQ414828.1 15121 19906 + 848 M 58 174 5 0 2 I 0 887 3 0 2 M 84 252 S 0 1 5 0 2 I 0 1382 3 0 2 S 1 2 M 21 63 G 0 3 M 12 36 5 0 2 I 0 106 3 0 2 M 44 132 G 0 3 M 13 39 G 0 6 M 54 162 5 0 2 I 0 971 3 0 2 M 92 276 5 0 2 I 0 219 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15122 19906 848 + . gene_id 2 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 15122 15295 . + . KQ414828.1 exonerate:protein2genome:local exon 15122 15295 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 15296 15297 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 15296 16186 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 16185 16186 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 16187 16439 . + . KQ414828.1 exonerate:protein2genome:local exon 16187 16439 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 16440 16441 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 16440 17825 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 17824 17825 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 17826 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17826 17929 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 2 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18381 . + . insertions 9 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 5 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 5 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 4 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19906 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19906 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15122 19906 848 + . alignment_id 2 ; Query gi|383857331|ref|XP_003704158.1| ; Align 15122 8 174 ; Align 16187 66 252 ; Align 17828 151 63 ; Align 17894 172 36 ; Align 18040 184 132 ; Align 18175 228 39 ; Align 18220 241 162 ; Align 19357 295 276 ; Align 19856 387 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 643 Query range: 186 -> 403 Target range: 10840 -> 13155 187 : LeuPheHisIleGlySerCysTyrPheCysPheAspAsnMetPheSerIlePheCysLeu : 206 |||!:! !! !|||! !|||||||||||||||||||||!!:|||!!!|||.!. !!:!! LeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerVal 10841 : CTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTG : 10898 207 : HisLeuAlaThrGlnPheArgIleLeuGlnTyrArgPheGluThrMetCysGluIleSer : 226 ||||||::! !||||||||||||||||||||||||!!. !! !:!!! !!!::!!..! HisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGln 10899 : CATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAA : 10958 227 : GluGluThrValHisAlaTyrLeuLysPheSerProThrAsnTyrAlaValAspValTyr : 246 ! :!!! ! ... :::::: ! ! ! !:!!! !.!! ! !||| TyrGlnIleSerGluLysAsnMetGluSerValLeuGluAspCysThrArgArgSerTyr 10959 : TATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGTAGATCTTAC : 11018 247 : GlnLysPheLysValTyrValGlnGlnHisGlnAlaLeuIleAspTyrSerThrLeuLeu : 266 :!!||||||||| !||||||!:!|||||||||.!!||||||||||||! ! ! !||| GluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLysLeu 11019 : GAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAGCTT : 11078 267 : GluArgValPheThrLeuIleThrPheGlyGlnValMetPhePheSerValLeuIleCys : 286 |||!.!|||!:!||| !|||! !.!!|||||||||:!:.!.|||||||||||||||||| GluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIleCys 11079 : GAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATTTGC : 11138 287 : LeuPheGlyTyrGlnIleValMet >>>> Target Intron 1 >>>> AlaAspS : 297 ||||||||||||||||||:!!:!! 1305 bp |||:!!! LeuPheGlyTyrGlnIleLeuLeu++ ++AlaAsnT 11139 : CTCTTTGGTTATCAGATATTATTGgt.........................agGCTAATA : 12476 298 : erThrProGluArgArgThrIlePheIleCysLeuThrValGlySerThrSerLeuLeuP : 317 !!:!!! !! !||||||!:!||||||!!:! !|||! ! !|||:!!! ! !||||||| hrSerLeuAlaArgArgSerIlePheMetPheLeuIleCysGlyAlaMetValLeuLeuP 12477 : CTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTTTTATTGT : 12536 318 : heMetPheThrTyrSerCysHisGlyLeuMetGluGlnSerAspLeuLeuAlaAspAlaM : 337 ||||||||||||||||||||:!! !:!!!!:|||||||||||| !:!!||| !||| heMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAlaPheAlaA 12537 : TTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCTTTTGCGG : 12596 338 : etTyrSerThrMetTrpThrArgIleProMetAsnLysTyrGlyLysMetLeuArgAsnA : 357 !||||||.!!:!:|||||| !!!!:|||||||||||| !||||||! !||||||:!!| laTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeuArgHisA 12597 : CGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTACGGCATG : 12656 358 : spLeuMetMetValIleLeuArgAlaArgArgThrCysCysIleThrAlaAsnGlyPheP : 377 |||||!!:||||||||| !|||:!!||||||..!||||||:!:|||||||||||||||| spLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsnGlyPheP 12657 : ATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATGGATTTT : 12716 378 : heProValSerLeuGluThrPheThrThr >>>> Target Intron 2 >>>> Il : 387 ||||||||||||||||||||!:!|||||| 359 bp || heProValSerLeuGluThrTyrThrThr++ ++Il 12717 : TCCCTGTGTCCTTAGAAACTTATACTACGgt.........................agat : 13105 388 : eLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnSerValGlu : 403 ||||||||||||||||||||||||||||||||||||||||!:!|||||| eLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnValGlu 13106 : tttgAGTACCGCGGCGTCGTACTTCACATTATTGAGAAATAACGTAGAA : 13155 vulgar: gi|383857331|ref|XP_003704158.1| 186 403 . KQ414828.1 10840 13155 + 643 M 108 324 5 0 2 I 0 1301 3 0 2 M 92 276 5 0 2 I 0 355 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10841 13155 643 + . gene_id 3 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 10841 11164 . + . KQ414828.1 exonerate:protein2genome:local exon 10841 11164 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 11165 11166 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 11165 12469 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12468 12469 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 12470 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12745 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13104 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13103 13104 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 13105 13155 . + . KQ414828.1 exonerate:protein2genome:local exon 13105 13155 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10841 13155 643 + . alignment_id 3 ; Query gi|383857331|ref|XP_003704158.1| ; Align 10841 187 324 ; Align 12470 295 276 ; Align 13105 387 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 509 Query range: 149 -> 400 Target range: 2879 -> 5250 150 : ValAsnLeuGlyGlyAsnGlyThrValArgLeuHisProPheAsnMetTrpLeuAsp<->Al : 169 !.!!:::::||| ||| :::! !||||||! ! ! !!|||.!.|||:!!||| ! AlaSerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuPr 2880 : GCAAgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCC : 2940 170 : aValLeuIleThrProTyrPheGluIleAlaPhePheGlyGln >>>> Target Intro : 184 !:!! !||||||||||||:::|||||| ||| !||| 406 bp oIleThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2941 : GATAACCATCACACCATactatgaaatattatttacgaTACAGgt................. : 2987 185 : n 1 >>>> IleLeuIleLeuPheHisIleGlySerCysTyrPheCysPheAspAsnMetP : 201 |||!!!|||:!!.!.:!!:!! !!! ! !!|||.!!|||.!!||||||.!.. ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheL 2988 : ........agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTC : 3442 202 : heSerIlePheCysLeuHisLeuAlaThrGlnPheArgIleLeuGlnTyrArgPheGluThr : 221 !.!!!!!:.!! !|||||| !||||||||||||||||||||||||||||||.!...!!.! euCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsn 3443 : TGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAAT : 3502 222 : MetCysGluIleSerGluGluThrValHisAlaTyrLeuLysPheSerProThrAsnTyrAl : 242 :!!|||! !!:!|||...!:: ||| :::|||:!!||| :! ValCysGlyAlaAsnGluArgSer---AspLysIleSerLysLysThrProSerAsn---Se 3503 : GTGTGCGGTGCAAACGAACGTAgc---gataaaatttcgaaaaaaacaCCGTCCAAT---TC : 3559 243 : aValAspValTyrGlnLysPheLysValTyrValGlnGlnHisGlnAlaLeuIleAspTyrS : 263 !! !!!: !||| ||||||||| !! !:!!|||||||||||||||||||||!!:|||! rAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrC 3560 : GGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACT : 3622 264 : erThrLeuLeuGluArgValPheThrLeuIleThrPheGlyGlnValMetPhePheSerVal : 283 !!!.! !|||:!!..!|||||| !:!!.!!..!.!!!.!||||||:!!.!!||||||:!! ysAsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeu 3623 : GTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTG : 3682 284 : LeuIleCysLeuPheGlyTyrGlnIleValMet >>>> Target Intron 2 >>>> : 295 |||!!:|||||| !|||||| :!:|||||| 457 bp LeuMetCysLeuAspGlyTyr---LeuValMet++ ++ 3683 : TTAATGTGCCTCGATGGATAT---TTGGTGATGgt.........................ag : 4170 296 : AlaAspSerThrProGluArgArgThrIlePheIleCysLeuThrValGlySerThrSerLe : 315 ! !|||!!! !! ! !!:!||| !! !|||:!:! !! ! !..!|||!!! !!!!! GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGl 4171 : GAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCA : 4232 316 : uLeuPheMetPheThrTyrSerCysHisGlyLeuMetGluGlnSerAspLeuLeuAlaAspA : 336 !|||!!.|||||||||||||||||| !! !!|||!!:..!:!!||| !:!!|||:!!| nLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnA 4233 : ACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATG : 4295 337 : laMetTyrSerThrMetTrpThrArgIleProMetAsnLysTyrGlyLysMetLeuArgAsn : 356 ||!!:|||..! ! !|||! !!.!:!:||||||:!!!:!! !|||::!|||||||||!!. laIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLys 4296 : CTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAA : 4355 357 : AspLeuMetMetValIleLeuArgAlaArgArgThrCysCysIleThrAlaAsnGlyPhePh : 377 ||||||! .!.|||||| !|||:!!||| ! !!||||||:!!|||||| !|||||||| AspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePh 4356 : GATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTT : 4418 378 : eProValSerLeuGluThrPheThrThr >>>> Target Intron 3 >>>> IleLe : 388 |||||||||||||||||||!:!|||:!! 761 bp ||||| eProValSerLeuGluThrTyrThrSer++ ++IleLe 4419 : CCCTGTGTCACTGGAAACGTACACTTCGgt.........................agATTTT : 5212 389 : uSerThrAlaAlaSerTyrPheThrLeuLeuArgAsn : 400 ||||||||||||||||||||||||||||||||||||| uSerThrAlaAlaSerTyrPheThrLeuLeuArgAsn 5213 : AAGTACCGCAGCGTCATACTTCACACTGCTACGAAAC : 5250 vulgar: gi|383857331|ref|XP_003704158.1| 149 400 . KQ414828.1 2879 5250 + 509 M 19 57 G 0 3 M 15 45 5 0 2 I 0 402 3 0 2 M 46 138 G 1 0 M 10 30 G 1 0 M 49 147 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 757 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2880 5250 509 + . gene_id 4 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2880 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2880 2984 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 0 ; deletions 3 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 5208 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 5207 5208 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 5209 5250 . + . KQ414828.1 exonerate:protein2genome:local exon 5209 5250 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2880 5250 509 + . alignment_id 4 ; Query gi|383857331|ref|XP_003704158.1| ; Align 2880 150 57 ; Align 2940 169 45 ; Align 3391 184 138 ; Align 3529 231 30 ; Align 3559 242 147 ; Align 3706 292 9 ; Align 4172 295 276 ; Align 5209 387 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 433 Query range: 182 -> 387 Target range: 22722 -> 23829 183 : GlnIleLeuIleLeuPheHisIleGlySerCysTyrPheCysPheAspAsnMetPheSer : 202 ||| !||| !:!!!:!!!.:!!.!!:!!||||||.!!||||||||| :::||| GlnAlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIlePhePhe 22723 : CAGGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatttttttc : 22780 203 : IlePheCysLeuHisLeuAlaThrGlnPheArgIleLeuGlnTyrArgPheGluThrMet : 222 |||...|||||||||:!!||| !||||||||||||||||||||||||.!!! !.!:!! IleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnVal 22781 : attttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTG : 22840 223 : CysGluIleSerGluGluThrValHisAlaTyrLeuLysPheSerProThrAsnTyrAla : 242 ! ! :!!|||||| !..! ! !::! ! ! ! !!!! ! ! |||:!! SerGlyLeuSerGluIleValLysSerSerGluAsnProSerThrAspGluLeuTyrSer 22841 : TCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAATTATACTCA : 22900 243 : ValAspValTyrGlnLysPheLysValTyrValGlnGlnHisGlnAlaLeuIleAspTyr : 262 ! ! ! !||| ||||||||| !! !:!!|||||||||||||||||||||!!:!:! GluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPhe 22901 : GAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAATTT : 22960 263 : SerThrLeuLeuGluArgValPheThrLeuIleThrPheGlyGlnValMetPhePheSer : 282 !!!.!! !||||||..!|||||||||:!!|||..!.!!|||||||||:!:.!.! !||| CysAlaThrLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMetSerSer 22961 : TGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCTAATGTCTAGC : 23020 283 : ValLeuIleCysLeuPheGlyTyrGlnIleValMetAlaAspSerThrProGlu{A} > : 301 :!!|||||||||!!!.!!|||||||||:!!:!!:!!!.!..!! ! ! ! ! {!} IleLeuIleCysPheIleGlyTyrGlnValLeuLeuValSerIleGluSerTyr{T}-+ 23021 : ATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGGTGAGTATCGAAAGCTAT{A}at. : 23080 302 : >>> Target Intron 1 >>>> {rg}ArgThrIlePheIleCysLeuThrValGly : 311 492 bp { !}|||..! !||| |||!!! !:!! ! +-{hr}ArgValAlaPheAlaCysPheLeuMetMet 23081 : ........................at{CG}CGCGTTGCTTTCGCGTGCTTCTTGATGATG : 23599 312 : SerThrSerLeuLeuPheMetPheThrTyrSerCysHisGlyLeuMetGluGlnSerAsp : 331 .!!! !|||! !|||!::|||||||||||||||||| !! !!:!!! !:!!||| GlyMetSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeu 23600 : GGCATGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCATAACAACAGAAAGCCTG : 23659 332 : LeuLeuAlaAspAlaMetTyrSerThrMetTrpThrArgIleProMetAsnLysTyrGly : 351 !:!!|||!!::!!:!!|||:!! ! |||! !!.!:!!||||||:!!|||!:!||| AsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGly 23660 : AACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATGGACAAATTTGGA : 23719 352 : LysMetLeuArgAsnAspLeuMetMetValIleLeuArgAlaArgArgThrCysCysIle : 371 |||:!!||||||!!.!!:|||...|||:!!|||||||||||||||||| !!! !..!:!: LysLeuLeuArgLysGluLeuGlnMetLeuIleLeuArgAlaArgArgProSerAlaLeu 23720 : AAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTG : 23779 372 : ThrAlaAsnGlyPhePheProValSerLeuGluThrPheThrThrIle : 387 |||||| !||||||||| !!:!!||||||||||||||||||! !:!! ThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 23780 : ACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 23829 vulgar: gi|383857331|ref|XP_003704158.1| 182 387 . KQ414828.1 22722 23829 + 433 M 118 354 S 0 1 5 0 2 I 0 488 3 0 2 S 1 2 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22723 23829 433 + . gene_id 5 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22723 23077 . + . KQ414828.1 exonerate:protein2genome:local exon 22723 23077 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23078 23079 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 23078 23569 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 23568 23569 . + . intron_id 0 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local cds 23570 23829 . + . KQ414828.1 exonerate:protein2genome:local exon 23570 23829 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22723 23829 433 + . alignment_id 5 ; Query gi|383857331|ref|XP_003704158.1| ; Align 22723 183 354 ; Align 23572 302 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 259 Query range: 182 -> 294 Target range: 37865 -> 38201 183 : GlnIleLeuIleLeuPheHisIleGlySerCysTyrPheCysPheAspAsnMetPheSer : 202 ||| !||| !:!!!:!!!.:!!.!!:!!||||||.!!||||||||| :::||| GlnAlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIlePhePhe 37866 : CAGGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatttttttc : 37923 203 : IlePheCysLeuHisLeuAlaThrGlnPheArgIleLeuGlnTyrArgPheGluThrMet : 222 |||...|||||||||:!!||| !||||||||||||||||||||||||.!!! !.!:!! IleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnVal 37924 : attttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTG : 37983 223 : CysGluIleSerGluGluThrValHisAlaTyrLeuLysPheSerProThrAsnTyrAla : 242 ! ! :!!|||||| !..! ! !::! ! ! ! !!!! ! ! |||:!! SerGlyLeuSerGluIleValLysSerSerGluAsnProSerThrAspGluLeuTyrSer 37984 : TCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAATTATACTCA : 38043 243 : ValAspValTyrGlnLysPheLysValTyrValGlnGlnHisGlnAlaLeuIleAspTyr : 262 ! ! ! !||| ||||||||| !! !:!!|||||||||||||||||||||!!:!:! GluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPhe 38044 : GAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAATTT : 38103 263 : SerThrLeuLeuGluArgValPheThrLeuIleThrPheGlyGlnValMetPhePheSer : 282 !!!.!! !||||||..!|||||||||:!!|||.!!.!!|||||||||:!:.!.|||||| CysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnValLeuMetPheSer 38104 : TGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCTAATGTTTAGC : 38163 283 : ValLeuIleCysLeuPheGlyTyrGlnIleValMet : 294 :!!|||||||||!!! !!! !|||||| !:!!:!! IleLeuIleCysPheValValTyrGlnAlaLeuLeu 38164 : ATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTG : 38201 vulgar: gi|383857331|ref|XP_003704158.1| 182 294 . KQ414828.1 37865 38201 + 259 M 112 336 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37866 38201 259 + . gene_id 6 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37866 38201 . + . KQ414828.1 exonerate:protein2genome:local exon 37866 38201 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37866 38201 259 + . alignment_id 6 ; Query gi|383857331|ref|XP_003704158.1| ; Align 37866 183 336 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 256 Query range: 299 -> 403 Target range: 28520 -> 29242 300 : GluArgArgThrIlePheIleCysLeuThrValGlySerThrSerLeuLeuPheMetPhe : 319 ||| !!|||..! !!!. |||!!!:!!:!! !.!!..!|||! !|||!::|||||| GluTrpArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuTrpMetPhe 28521 : GAATGGCGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTATGGATGTTC : 28578 320 : ThrTyrSerCysHisGlyLeuMetGluGlnSerAspLeuLeuAlaAspAlaMetTyrSer : 339 |||||||||||| !! !!:!!! !:!!||| !:!!|||!!::!!:!:|||:!! ThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAla 28579 : ACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCT : 28638 340 : ThrMetTrpThrArgIleProMetAsnLysTyrGlyLysMetLeuArgAsnAspLeuMet : 359 ! |||! !!.!:!!||||||:::|||:::||||||:::||||||!!.||||||... GlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGln 28639 : GGACCATGGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAAGATCTACAA : 28698 360 : MetValIleLeuArgAlaArgArgThrCysCysIleThrAlaAsnGlyPhePheProVal : 379 :!!:!!|||||||||||||||||| !!! !! !:!:|||||| !||||||||| !!:!! ValLeuIleLeuArgAlaArgArgProSerSerLeuThrAlaCysGlyPhePheSerIle 28699 : GTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATA : 28758 380 : SerLeuGluThrPheThrThr >>>> Target Intron 1 >>>> IleLeuSerT : 390 ||||||||||||||||||! ! 410 bp |||:!!|||| SerLeuGluThrPheThrLys++ ++IleMetSerT 28759 : TCTCTCGAAACCTTTACTAAGgt.........................agATCATGAGTA : 29201 391 : hrAlaAlaSerTyrPheThrLeuLeuArgAsnSerValGlu : 403 ||:!! !||||||||||||||||||!:!.!.!!!:!!||| hrSerMetSerTyrPheThrLeuLeuLysGlnCysIleGlu 29202 : CATCAATGTCGTATTTCACATTATTAAAACAATGTATCGAG : 29242 vulgar: gi|383857331|ref|XP_003704158.1| 299 403 . KQ414828.1 28520 29242 + 256 M 87 261 5 0 2 I 0 406 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28521 29242 256 + . gene_id 7 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 28521 28781 . + . KQ414828.1 exonerate:protein2genome:local exon 28521 28781 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 28782 28783 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 28782 29191 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 29190 29191 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 29192 29242 . + . KQ414828.1 exonerate:protein2genome:local exon 29192 29242 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28521 29242 256 + . alignment_id 7 ; Query gi|383857331|ref|XP_003704158.1| ; Align 28521 300 261 ; Align 29192 387 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 227 Query range: 67 -> 149 Target range: 8887 -> 9133 68 : LeuTyrValAlaCysAsnLeuSerIleValAlaLeuThrSerPheLysValPheIleLeuVa : 88 |||||||||::! !|||||| !! !||| !||||||!!!.!!|||:!! !:!!:!!:! LeuTyrValSerThrAsnLeuLeuSerValIleLeuThrThrIleLysLeuThrValValLe 8888 : CTTTACGTTAGTACCAACTTACTGAGCGTGATCTTAACTACGATCAAGCTAACTGTCGTACT : 8948 89 : lLeuTyrArgSerGluLeuAlaAspLeuIleLeuTyrMetGlnGluHisPheTrpHisCysG : 109 !:!!:!!!:! !|||!!! !..!|||||| !|||||| ! ||||||||||||:!! ! uIleHisLysValGluPheMetSerLeuIleAspTyrMetTyrGluHisPheTrpAsnValA 8949 : AATACACAAAGTGGAATTCATGAGTCTGATTGATTACATGTACGAACATTTCTGGAACGTGG : 9011 110 : luTyrAspGluArgGluLysAlaIleLeuAlaSerCysArgLysThrCysIlePhePheThr : 129 !:|||||| !.!|||||| !|||:!: :::|||:::||||||||||||.!!|||||| spTyrAspLeuHisGluLysArgIleMetAspAsnCysLysLysThrCysIleIlePheThr 9012 : ATTACGATCTTCACGAGAAAAGAATTATggataattgtaaaaaaactTGCATCATCTTCACT : 9071 130 : IleSerValThrPheIleGlyGluCysAlaValPheSerTyrLeuValThrProIleVal : 149 !||||||||| !|||||| !||||||:!!.!.||||||:!!!.!||||||.!!:!! SerSerValThrThrIleGlyIleCysAlaIleIleSerTyrIleAlaThrProPheIle 9072 : TCAAGCGTCACTACCATTGGCATATGCGCTATAATATCTTACATAGCGACACCGTTTATC : 9133 vulgar: gi|383857331|ref|XP_003704158.1| 67 149 . KQ414828.1 8887 9133 + 227 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 8888 9133 227 + . gene_id 8 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 8888 9133 . + . KQ414828.1 exonerate:protein2genome:local exon 8888 9133 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 8888 9133 227 + . alignment_id 8 ; Query gi|383857331|ref|XP_003704158.1| ; Align 8888 68 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 206 Query range: 308 -> 387 Target range: 38523 -> 38760 309 : ThrValGlySerThrSerLeuLeuPheMetPheThrTyrSerCysHisGlyLeuMetGlu : 328 |||:!! !.!!..!|||! !|||!::|||||||||||||||||| !! !!:!!! ! ThrMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThr 38524 : ACGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACA : 38581 329 : GlnSerAspLeuLeuAlaAspAlaMetTyrSerThrMetTrpThrArgIleProMetAsn : 348 :!!||| !:!!|||!!::!!:!:|||:!! ! |||! !!.!:!!||||||::: GluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAsp 38582 : GAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggat : 38641 349 : LysTyrGlyLysMetLeuArgAsnAspLeuMetMetValIleLeuArgAlaArgArgThr : 368 |||:::||||||:::||||||!!.||||||...:!!:!!|||||||||||||||||| !! LysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgPro 38642 : aaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCT : 38701 369 : CysCysIleThrAlaAsnGlyPhePheProValSerLeuGluThrPheThrThrIle : 387 ! !! !:!:|||||| !||||||||| !!:!!||||||||||||||||||! !:!! SerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 38702 : TCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 38760 vulgar: gi|383857331|ref|XP_003704158.1| 308 387 . KQ414828.1 38523 38760 + 206 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38524 38760 206 + . gene_id 9 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38524 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38524 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38524 38760 206 + . alignment_id 9 ; Query gi|383857331|ref|XP_003704158.1| ; Align 38524 309 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 194 Query range: 63 -> 149 Target range: 21885 -> 22143 64 : LeuSerAlaAlaLeuTyrValAlaCysAsnLeuSerIleValAlaLeuThrSerPheLys : 83 ........!..!:!!|||:!!||||||||| !! ! !:!!!.!||| !! !.!!||| PheGlnValCysMetTyrMetAlaCysAsnSerLeuAlaLeuValLeuAspIleIleLys 21886 : tttcaggTTTGCATGTACATGGCATGCAACAGTTTAGCCCTGGTTTTGGATATAATCAAG : 21943 84 : ValPheIleLeuValLeuTyrArgSerGluLeuAlaAspLeuIleLeuTyrMetGlnGlu : 103 :!!|||:!!|||:!!:!! !:!!.!:!!!!! !! !|||||| !|||||||||:!! IlePheValLeuLeuValArgLysLysLysPheLeuGlyLeuIleGluTyrMetGlnLys 21944 : ATTTTCGTCCTACTCGTACGGAAGAAAAAGTTTCTCGGTCTGATTGAGTACATGCAGAAG : 22003 104 : HisPheTrpHisCysGluTyrAspGluArgGluLysAlaIleLeuAlaSerCysArgLys : 123 :!!|||||||||! .!.||||||:!! !|||!!.:!!|||:!!||| !...!:!::! AsnPheTrpHisLeuAsnTyrAspGlnAspGluAsnSerIleIleAlaHisAlaLysArg 22004 : AATTTTTGGCATTTGAACTACGACCAGGACGAGAATTCTATTATCGCACACGCGAAACGA : 22063 124 : ThrCysIlePhePheThrIleSerValThrPheIleGlyGluCysAlaValPheSerTyr : 143 |||||||||!:!|||..! ! ! !!:!!||| !..!:!!! !.!!|||||||||||| ThrCysIleTyrPheValCysValPheSerPheCysSerGlnSerThrValPheSerTyr 22064 : ACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCCTAT : 22123 144 : LeuValThrProIleVal : 149 :!!:!!! !|||.!!||| IleIleArgProPheVal 22124 : ATAATAAGGCCATTTGTA : 22143 vulgar: gi|383857331|ref|XP_003704158.1| 63 149 . KQ414828.1 21885 22143 + 194 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21886 22143 194 + . gene_id 10 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 21886 22143 . + . KQ414828.1 exonerate:protein2genome:local exon 21886 22143 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21886 22143 194 + . alignment_id 10 ; Query gi|383857331|ref|XP_003704158.1| ; Align 21886 64 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 7 -> 68 Target range: 727 -> 910 8 : AspLeuSerIleThrLeuSerThrPheCysMetLysTyrAlaGlyLeuTrpThrAlaLysAsnT : 29 |||:!!:!!:!:|||:!!!!!.!!|||! !:!!||| ! !|||!!!||| !||| ! !.!| AspIleAlaValThrValThrAlaPheTyrLeuLysIleIleGlyPheTrpLeuAlaAspThrT 728 : GACATAGCGGTGACCGTTACGGCTTTCTACTTGAAAATTATCGGCTTCTGGTTAGCTGACACTT : 791 30 : yrAlaGluGluArgArgArgLysLeuGlyIleThrTyrSerIleTyrIleLeuCysPheAlaMe : 50 ||! !|||:!:||||||||||||...... !.!!:!!!!|||!:!!!:||| ! !|||:! yrGluGluLysArgArgArgLysPheAlaGlnAsnPheThrIlePheMetLeuValCysAlaVa 792 : ACGAGGAGAAacgtcgaagaaaattcgcgcAGAATTTCACGATATTTATGCTGGTGTGCGCTGT : 854 51 : tPhePheGluIleArgAspLeuTyrPheSerTrpGlyAspLeuSerAlaAlaLeu : 68 ! ! .!!|||! ||||||:!!|||!:!!!!|||||||||!!!|||!.!::!:!! lValIleGluThrArgAspIleTyrTyrThrTrpGlyAspPheSerValSerIle 855 : GGTAATTGAGACGAGGGATATCTATTACACCTGGGGTGATTTCAGCGTAAGTATA : 910 vulgar: gi|383857331|ref|XP_003704158.1| 7 68 . KQ414828.1 727 910 + 151 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 728 910 151 + . gene_id 11 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 728 910 . + . KQ414828.1 exonerate:protein2genome:local exon 728 910 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 728 910 151 + . alignment_id 11 ; Query gi|383857331|ref|XP_003704158.1| ; Align 728 8 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 7 -> 67 Target range: 21051 -> 21231 8 : AspLeuSerIleThrLeuSerThrPheCysMetLysTyrAlaGlyLeuTrpThrAlaLys : 27 |||:!!|||:!!! !|||:!!!.!|||! !:!! ! !!.!|||!!!||| !||| AspValSerValArgLeuAlaAsnPheTyrLeuTyrValValGlyPheTrpPheAlaAla 21052 : GACGTTTCCGTTAGATTAGCCAATTTTTATCTGTATGTCGTCGGCTTCTGGTTCGCCGCT : 21109 28 : AsnTyrAlaGluGluArgArgArgLysLeuGlyIleThrTyrSerIleTyrIleLeuCys : 47 ||| ! !|||||| !! ! !!!!. !!.!||| !|||!!!||| !! :!!! ! AsnArgIleGluGluTrpPheGlyAsnAlaAlaIleLeuTyrThrIleValThrValPhe 21110 : AATCGTATAGAGGAATGGTTCGGAAACGCGGCGATTCTGTATACCATTGTCACGGTCTTC : 21169 48 : PheAlaMetPhePheGluIleArgAspLeuTyrPheSerTrpGlyAspLeuSerAlaAla : 67 |||!.!|||!::.!!:!!:!:|||! ||||||||||||||||||:!!!!!..!!.!::! PheValMetTrpLeuGlnLeuArgGlyLeuTyrPheSerTrpGlyAsnPheGluValSer 21170 : TTTGTCATGTGGCTTCAGCTGAGAGGACTTTATTTCTCCTGGGGAAACTTTGAAGTAAGT : 21229 vulgar: gi|383857331|ref|XP_003704158.1| 7 67 . KQ414828.1 21051 21231 + 115 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21052 21231 115 + . gene_id 12 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 21052 21231 . + . KQ414828.1 exonerate:protein2genome:local exon 21052 21231 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21052 21231 115 + . alignment_id 12 ; Query gi|383857331|ref|XP_003704158.1| ; Align 21052 8 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 7 -> 67 Target range: 26081 -> 26261 8 : AspLeuSerIleThrLeuSerThrPheCysMetLysTyrAlaGlyLeuTrpThrAlaLys : 27 |||:!!|||:!!! !|||:!!!.!|||! !:!! ! !!.!|||!!!||| !||| AspValSerValArgLeuAlaAsnPhePheLeuTyrValValGlyPheTrpPheAlaAla 26082 : GACGTTTCCGTTAGATTAGCCAACTTTTTTCTGTATGTCGTCGGCTTCTGGTTCGCCGCT : 26139 28 : AsnTyrAlaGluGluArgArgArgLysLeuGlyIleThrTyrSerIleTyrIleLeuCys : 47 ||| ! !|||||| !! !|||!!. !!.!||| !|||!!!||| !! :!!! ! AsnArgIleGluGluTrpPheArgAsnAlaAlaIleLeuTyrThrIleValThrValPhe 26140 : AATCGTATAGAGGAATGGTTCAGAAACGCGGCGATTCTGTATACCATTGTCACGGTCTTC : 26199 48 : PheAlaMetPhePheGluIleArgAspLeuTyrPheSerTrpGlyAspLeuSerAlaAla : 67 |||!.!|||!::.!!:!!:!: !!! |||||||||:!!||||||:!!!!!..!!.!::! PheValMetTrpLeuGlnLeuGlyGlyLeuTyrPheAlaTrpGlyAsnPheGluValSer 26200 : TTTGTCATGTGGCTTCAGCTGGGAGGGCTTTATTTCGCCTGGGGAAACTTTGAAGTAAGT : 26259 vulgar: gi|383857331|ref|XP_003704158.1| 7 67 . KQ414828.1 26081 26261 + 112 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26082 26261 112 + . gene_id 13 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 26082 26261 . + . KQ414828.1 exonerate:protein2genome:local exon 26082 26261 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 26082 26261 112 + . alignment_id 13 ; Query gi|383857331|ref|XP_003704158.1| ; Align 26082 8 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 973 Query range: 4 -> 402 Target range: 256616 -> 258738 5 : SerThrIleGlnGlnAsnProIleGlyLeuSerAspTyrSerLeuGlnLeuAsnArgT : 24 :!!..!:!!:!! !||| !! !.!!! !|||||||||||||||||||||||||||| AlaValValLysThrAsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgT 256617 : GCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGAT : 256674 25 : rpPheLeuLysProIleGlyValTrpProValLeuThrSerArgAsn<-><->GluLy : 41 ||||||||||||||||||||!.!|||||| !! !:!!|||! !!.. |||:: rpPheLeuLysProIleGlyAlaTrpProProSerSerSerThrThrThrLeuGluAr 256675 : GGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCG : 256731 42 : sIleValSerLeuThrLeuAsnValIleCysTyrCysSerIleLeuValThrValVal : 60 !! !||||||:!!..!||||||:!!:!!|||||| !!||||||||| !!|||:!!:!! gAsnValSerIleValLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIle 256732 : AAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATA : 256788 61 : ProCysLeuLeuArgIlePheLeuGluAspAspAspLeuLeuAlaLysLeuLysMetT : 80 ||||||||||||!.!:!!||||||!!:||||||..!!!!! |||:::||| ProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrMetLysValLysAsnP 256789 : CCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatt : 256848 81 : hrGlyAlaMetSerHisCysPheAlaGlyGlyLeuAsnTyrThrThrLeuLeuLeuAr : 99 ||| !!|||||||||!! .!! !.!! !! !||||||||| !|||||||||!: heGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGl 256849 : tcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACA : 256905 100 : gArgLysGluIleHisTyrCysIleLysGlnIleAsnSerAspTrpArgThrValLys : 118 ! !!|||!!:|||!.!||||||:!!:!!!!.|||.!.!!!|||||||||! !|||!:! nGlyLysAspIleArgTyrCysValGluHisIleGluThrAspTrpArgMetValArg 256906 : AGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGG : 256962 119 : ArgProAspAlaGlnGlnValMetLeuLysAspAlaLysPheGlyArgSerValAlaA : 138 ||| ! ! ! !||||||||||||:!!|||:!!|||!:!|||||||||! !||||||. ArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaT 256963 : AGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCA : 257022 139 : laPheCysAlaIlePheMetGlnGlyGlyValPheCysPheSerValAlaThrValPh : 157 !!||||||||| !.!!||||||.!!||||||||||||||| |||:!!:!!!.!.! hrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePheValSerSerAlaLe 257023 : CATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCT : 257079 158 : eThrMetGluIleValGlnValGlyAsnGluThrArgAlaValHisThrPheProCys : 176 .!.!! !||||||:!!!!.|||||||||||||||! ! !|||!....!.!.||| ! uAsnThrGluIleIleHisValGlyAsnGluThrThrIleValArgValLeuProVal 257080 : GAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTT : 257136 177 : ProAlaTyrArgLysLeuIleProValAspAsnAsnPheLeuCysGluIlePheLeuA : 196 !!!.!|||!:!||||||:!: !||||||.!.!:! ! ! !|||||| ! :!! ThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrAsnGluIleValValP 257137 : ACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCT : 257196 197 : laValGlnPheLeuCysValPheIleValAsnSerThrIleValGlyAlaPheSerLe : 215 !:!!||| !! !! !.!!|||!.!!.!!!!!:!! !|||.!! !|||||||| heMetGlnThrTrpSerSerIleIleAlaThrThrSerThrValSerIlePheSerLe 257197 : TTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCT : 257253 216 : uAlaIleValPheAlaSerHisValTyrGlyGlnLeuAspIleLeuMetValTrpVal : 234 |||| !|||||||||!!!|||!.!|||||||||||| !:!:|||||| !|||:!! uAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIle 257254 : CGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATA : 257310 235 : ThrGluTyrValAsnLysSerGluGluMetHisLysAsn<->ArgTrpAsnGlnIleG : 253 ||||||!:!||||||:!!|||..!.!. ...|||... :::!!.||||||| ThrGluPheValAsnGluSerArgAsnArgGluLysThrPheProPheLysGlnIleG 257311 : ACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAG : 257370 254 : lyValPheValGluAsnHisValLysIleLeu{Ar} >>>> Target Intron 1 : 264 |||||.!!||||||:!!|||:!!!:!:!:|||{||} 760 bp lyValIleValGluHisHisLeuArgValLeu{Ar}++ 257371 : GCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt.................... : 257407 265 : >>>> {g}PheIleAlaHisIleGluGlnValMetSerProIleCysLeuSerGlu : 280 {|}! !:!! !:!! !.!.! !:!!.....! ! !! ! !! +-{g}CysValMetTyrArgAsnLeuLeuGlnGlnAsnGly***AsnArgThr 257408 : .....ac{G}TGCGTTATGTACCGAAACCTGTTGCAACAAAATGGTTAAAATCGTACC : 258211 281 : LeuCysGlnCysThrLeuSerMetCysThrLeuCysTyrTyrIleIleMetGluTrpG : 300 ! ! !.!.! ! !!:!! !! :::::: :::||| ......||||||. TyrAsnAsnPheProIleHisSerTyrSerValIlePheTyrTyrPheGlnGluTrpS 258212 : TACAATAATTTTCCTATACACAGctattctgttattttttattattttcaggaATGGT : 258271 301 : luGluHisAspValGlnAsnLeuThrSerTyrAlaMetIleLeuValSerValThrPh : 319 .. !!..|||:::|||||||||:::|||||| !|||||||||:!!|||::::::|| erThrGlnAspIleGlnAsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPh 258272 : CTACGCaagatattcaaaatttgagttcgtaCTTTATGATACTCATATcactttcttt : 258328 320 : eAsnValPheIleMetCysTyrIleGlyGluValLeuMetGluGln >>>> Targe : 335 ||||:::|||::::::|||||||||||||||:!!|||! |||||| eAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluGln++ 258329 : caatatttttgtaatatgttACATAGGTGAAATATTAACAGAACAGgt.......... : 258378 336 : t Intron 2 >>>> CysAsnArgValAlaAspValValTyrMetThrAsnTrpTy : 348 90 bp |||!!.!:!|||!.!||||||||||||||||||:!!||||| ++CysLysLysValGlyAspValValTyrMetThrAspTrpTy 258379 : ...............agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTA : 258505 349 : rCysMetProTyrArgSerIleLeuAspLeuIleLeuIleIleSerArgSerAsnVal : 367 |! !:!:||| !!!:!!!!||||||||||||||||||:!!|||:!!||||||!:!||| rTyrLeuProAspLysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerVal 258506 : TTATCTACCTGACAAAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTG : 258562 368 : ValThrLysIleThrAlaGlyLysValIleTyrMetSerIleTyrThrPheGlyAsp : 387 |||..!:!!||||||||||||||| ...:::||||||||||||||||||.!!||| ValValGlnIleThrAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAsp+ 258563 : GTCGTTCAAATCACCGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATg : 258622 388 : >>>> Target Intron 3 >>>> ValLeuLysThrAlaPheThrTyrLeuAsn : 396 69 bp |||:!!||||||:!!|||.!!||||||||| + ++ValIleLysThrSerPheAlaTyrLeuAsn 258623 : t.........................agGTAATAAAAACCTCTTTCGCGTATTTGAAT : 258718 397 : IleLeuArgGlnThrThr : 402 :!!|||||||||..!:!! LeuLeuArgGlnValSer 258719 : TTACTGCGTCAAGTATCG : 258738 vulgar: gi|383850520|ref|XP_003700843.1| 4 402 . KQ414889.1 256616 258738 + 973 M 35 105 G 0 6 M 208 624 G 0 3 M 16 48 S 0 2 5 0 2 I 0 756 3 0 2 S 1 1 M 70 210 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256617 258738 973 + . gene_id 1 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256617 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256617 257404 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 258164 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258163 258164 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 258165 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258165 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256617 258738 973 + . alignment_id 1 ; Query gi|383850520|ref|XP_003700843.1| ; Align 256617 5 105 ; Align 256728 40 624 ; Align 257355 248 48 ; Align 258166 265 210 ; Align 258466 335 156 ; Align 258691 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 842 Query range: 5 -> 296 Target range: 274350 -> 275306 6 : ThrIleGlnGlnAsnProIleGlyLeuSerAspTyrSerLeuGlnLeuAsnArgTrpP : 25 !.!:!! !||| ! !.!!|||||||||||||||||||||||||||||||||| AsnValThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpP 274351 : AACGTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGT : 274408 26 : heLeuLysProIleGlyValTrpProValLeu<-><->ThrSerArgAsnGluLysIl : 42 |||||||||||||||||!.!||||||:!! ! |||!!!!:! !|||::!|| heLeuLysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIl 274409 : TCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAAT : 274465 43 : eValSerLeuThrLeuAsnValIleCysTyrCysSerIleLeuValThrValValPro : 61 |:!!|||! ! ||| :::|||||||||! !|||||| !||||||:!!||| eLeuSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIlePro 274466 : CCTTTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCA : 274522 62 : CysLeuLeuArgIlePheLeuGluAspAspAspLeuLeuAlaLysLeuLysMetThrG : 81 !!:!!!!!!.!|||.!.|||! !|||!!:..!|||! ! !|||||||||:!! !| SerIlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuG 274523 : AGCATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCG : 274582 82 : lyAlaMetSerHisCysPheAlaGlyGlyLeuAsnTyrThrThrLeuLeuLeuArgAr : 100 || !!:!:.!!|||!! ||| !||||||:!!||||||||||||||||||||||||!! lyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSe 274583 : GTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAG : 274639 101 : gLysGluIleHisTyrCysIleLysGlnIleAsnSerAspTrpArgThrValLysArg : 119 !|||||||||!.! !|||:!::!!!!.!!:.!.!!!|||||||||! !|||! ||| rLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArg 274640 : CAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGA : 274696 120 : ProAspAlaGlnGlnValMetLeuLysAspAlaLysPheGlyArgSerValAlaAlaP : 139 |||!!:! !||||||||||||||||||:!!||||||.!!||||||! !|||||| !| ProGluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIleP 274697 : CCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCT : 274756 140 : heCysAlaIlePheMetGlnGlyGlyValPheCysPheSerValAlaThrValPheTh : 158 |||||||| ||||||||| !!||||||.!!|||!:!!!!||| !|||!.!||||| heCysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheTh 274757 : TCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCAC : 274813 159 : rMetGluIleValGlnValGlyAsnGluThrArgAlaValHisThrPheProCysPro : 177 ||||:!!! !||||||||||||||||||||||||.!!||||||! !!!.|||||| ! rMetGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLys 274814 : TATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAA : 274870 178 : AlaTyrArgLysLeuIleProValAspAsnAsnPheLeuCysGluIlePheLeuAlaV : 197 ||||||!:!|||:!!:!! !!||||||!..!:! ! !|||||| !!|||||| AlaTyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValLeuAlaS 274871 : GCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCT : 274930 198 : alGlnPheLeuCysValPheIleValAsnSerThrIleValGlyAlaPheSerLeuAl : 216 !||||||:!!! ! !|||||||||||||||!:! |||||||||||||||||||| erGlnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAl 274931 : CGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGC : 274987 217 : aIleValPheAlaSerHisValTyrGlyGlnLeuAspIleLeuMetValTrpValThr : 235 | !|||||||||:!!|||!.!||||||||||||..!:!:||||||:!!|||:!!||| aAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThr 274988 : CGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACC : 275044 236 : GluTyrValAsnLysSerGluGluMetHisLysAsn<->ArgTrpAsnGlnIleGlyV : 254 |||!:!|||||| ! |||..!!!:...:::|||||| :::::!:!!||||||| GluPheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyV 275045 : GAGTTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCG : 275104 255 : alPheValGluAsnHisValLysIleLeu{Ar} >>>> Target Intron 1 >> : 264 || !!||||||:!!|||:!!!:!:!!|||{!!} 74 bp alValValGluHisHisLeuArgValLeu{Se}++ 275105 : TGGTTGTCGAACATCATCTGAGGGTACTC{AG}gt....................... : 275138 265 : >> {g}PheIleAlaHisIleGluGlnValMetSerProIleCysLeuSerGluLeu : 281 {!}|||||||||!.!||||||.!.||||||!:!! !||||||!!!! !|||||| ++{r}PheIleAlaArgIleGluAspValMetAsnArgIleCysPheMetGluLeu 275139 : ..ag{T}TTCATAGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAATTG : 275259 282 : CysGlnCysThrLeuSerMetCysThrLeuCysTyrTyrIleIle : 296 ! !:!!|||||||||..!||||||! !||| !!|||||||||:!! PheLysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleLeu 275260 : TTCAAGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTCTC : 275306 vulgar: gi|383850520|ref|XP_003700843.1| 5 296 . KQ414889.1 274350 275306 + 842 M 30 90 G 0 6 M 212 636 G 0 3 M 16 48 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274351 275306 842 + . gene_id 2 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274351 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274351 275135 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274351 275306 842 + . alignment_id 2 ; Query gi|383850520|ref|XP_003700843.1| ; Align 274351 6 90 ; Align 274447 36 636 ; Align 275086 248 48 ; Align 275211 265 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 766 Query range: 14 -> 339 Target range: 259766 -> 261859 15 : SerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpPro< : 34 ||||||||||||||||||!!!|||||||||||||||||||||||||||!.!|||||| SerAspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProP 259767 : AGTGACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCAC : 259824 35 : -><->ValLeuThrSerArgAsnGluLysIleValSerLeuThrLeuAsnValIleCy : 51 !! !|||!!!||| !|||||||||:!!|||:!!! !|||! ! !!||||| roSerSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCy 259825 : CTTCATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTG : 259881 52 : sTyrCysSerIleLeuValThrValValProCysLeuLeuArgIlePheLeuGluAsp : 70 |||| !!!!!||||||||||||:!!:!!||||||:!!|||!.!!!:.!.|||||| ! sTyrSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLys 259882 : CTACAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAG : 259938 71 : AspAspLeuLeuAlaLysLeuLysMetThrGlyAlaMetSerHisCysPheAlaGlyG : 90 !!:..!|||! ! !||| !|||:!! !||| !!:!:!!!|||!! |||!.!||| GluSerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyC 259939 : GAGAGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCT : 259998 91 : lyLeuAsnTyrThrThrLeuLeuLeuArgArgLysGluIleHisTyrCysIleLysGl : 109 !!:!!|||||||||||||||||||||||| !!!:!!!:|||! ! !|||:!::!!!! ysIleAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHi 259999 : GTATTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACA : 260055 110 : nIleAsnSerAspTrpArgThrValLysArgProAspAlaGlnGlnValMetLeuLys : 128 .:!:.!.!:!|||||||||! !:!!! !||| ! ! ! !|||.!.|||||||||!:! sValGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArg 260056 : CGTGGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGA : 260112 129 : AspAlaLysPheGlyArgSerValAlaAlaPheCysAlaIlePheMetGlnGlyGlyV : 148 !!|||||||||||||||! !|||||||||! !|||||| !|||:!!|||||||||| TyrAlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyV 260113 : TACGCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAG : 260172 149 : alPheCysPheSerValAlaThrValPheThrMetGluIleValGlnValGlyAsnGl : 167 ||.!.||||||!!!:!!!.!||||||!!.!:!! |||:!::!!|||||||||||||| alLeuCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGl 260173 : TTCTGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGA : 260229 168 : uThrArgAlaValHisThrPheProCysProAlaTyrArgLysLeuIleProValAsp : 186 ||||||| !|||||| !!!.|||||| !!!.!|||!:!:!!|||||| !|||:!! uThrArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsn 260230 : GACGAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAAC : 260286 187 : AsnAsnPheLeuCysGluIlePheLeuAlaValGlnPheLeuCysValPheIleValA : 206 :!!!:! !:!! !|||||| !!|||!.!|||||||||:!!! ! !|||||||||| AspSerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValA 260287 : GACAGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGA : 260346 207 : snSerThrIleValGlyAlaPheSerLeuAlaIleValPheAlaSerHisValTyrGl : 225 |||||!:!! !|||||| !|||||||||||| !|||.!..!!:!!|||!.!! !|| snSerSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGl 260347 : ATTCGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGG : 260403 226 : yGlnLeuAspIleLeuMetValTrpValThrGluTyrValAsnLysSerGluGluMet : 244 |||||||:!!:!:||||||! !|||:!!||||||!:!|||:!!:!!|||..!.!.! ! yGlnLeuAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArg 260404 : CCAGTTGAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGG : 260460 245 : HisLysAsnArg<->TrpAsnGlnIleGlyValPheValGluAsnHisValLysIleL : 263 ! |||!!. ! !::!!.:!!|||||||||.!!||||||:!!|||:!!!:! !| LysLysLysAlaProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaL 260461 : AAGAAAAAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCAC : 260520 264 : eu{Ar} >>>> Target Intron 1 >>>> {g}PheIleAlaHisIleGlu<- : 271 ||{! } 1103 bp {!}!!. ! ! !:!!||| eu{Th}++ ++{r}LeuTyrArgAlaLeuGlu** 260521 : TC{AC}gt.........................ag{T}TTGTATCGGGCCTTAGAATA : 261647 272 : >GlnValMetSerProIleCysLeuSerGluLeuCysGlnCysThrLeuSerMetCys : 289 !:: !...!!!|||! !! !! !..! ! !! !.!.|||!.!! ! !!!: ! *ArgArgGlnArgProThrPheTyrAspTyrSerTyrAspCysAsnCysValIleIle 261648 : ACGCAGGCAAAGGCCAACATTTTACGATTACAGTTACGATTGCAATTGTGTAATAATC : 261704 290 : ThrLeuCysTyrTyrIleIleMet<->GluTrpGluGluHisAspValGlnAsnLeuT : 308 !!!. |||:::...:::::: ||||||! |||!!.|||:!!|||||||||: PhePhe***TyrPhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuS 261705 : TTTTTctgatatttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGT : 261764 309 : hrSerTyrAlaMetIleLeuValSerValThrPheAsnValPheIleMetCysTyrIl : 327 !!!!!||| !|||!!:|||:!!:!!:!! !|||||||||||||||!!:|||||||| erThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIl 261765 : CCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACAT : 261821 328 : eGlyGluValLeuMetGluGlnCysAsnArgValAla : 339 |||||||:!!|||! !|||||| .!.!.!:!!||| eGlyGluIleLeuThrGluGlnValGlnHisLeuAla 261822 : CGGTGAAATACTAACGGAACAGGTACAACATTTGGca : 261859 vulgar: gi|383850520|ref|XP_003700843.1| 14 339 . KQ414889.1 259766 261859 + 766 M 19 57 G 0 6 M 215 645 G 0 3 M 15 45 S 0 2 5 0 2 I 0 1099 3 0 2 S 1 1 M 6 18 G 0 3 M 27 81 G 0 3 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259767 261859 766 + . gene_id 3 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259767 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259767 260524 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 261627 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261626 261627 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261628 261859 . + . KQ414889.1 exonerate:protein2genome:local exon 261628 261859 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259767 261859 766 + . alignment_id 3 ; Query gi|383850520|ref|XP_003700843.1| ; Align 259767 15 57 ; Align 259830 34 645 ; Align 260478 249 45 ; Align 261629 265 18 ; Align 261650 271 81 ; Align 261734 298 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 759 Query range: 0 -> 387 Target range: 232411 -> 235147 1 : MetIleAspGluSerThrIleGlnGlnAsnProIleGlyLeuSerAspTyrSerLeuG : 20 |||:!:|||..!||| ! ! ! !||| !!! !! !! !!!:||||||:!!| MetLeuAspSerSerArgAspThrLeuAsnAlaThrArgAspTyrGluTyrSerIleG 232412 : ATGCTGGACTCGTCCCGCGACACGTTGAACGCTACGCGAGACTACGAGTACAGCATCC : 232469 21 : lnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProValLeu<-><->ThrSe : 37 ||:!!|||||||||||||||! !|||!!:|||!.!|||||| !:!! ||||| lnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgValThrGluThrSe 232470 : AGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTGTTACAGAGACCTC : 232526 38 : rArgAsnGluLysIleValSerLeuThrLeuAsnValIleCysTyrCysSerIleLeu : 56 |||| !:!!:!!:!!:!!:!! ! !|||!..:!!! !|||:!!! ! !!!::!! rArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHisSerLeuMetIle 232527 : GAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCATTCTCTGATGATC : 232583 57 : ValThrValValProCysLeuLeuArgIlePheLeuGluAspAspAspLeuLeuAlaL : 76 !:!!:!!|||||||||:!!||| !|||.!.!!!|||||| ..!||| !! !! SerSerIleValProCysIleLeuPheIleLeuPheGluAspThrSerLeuGluGluA 232584 : TCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACGAGCCTAGAGGAAA : 232643 77 : ysLeuLysMetThrGlyAlaMetSerHisCysPheAlaGlyGlyLeuAsnTyrThrTh : 95 :!:!!||| ! !||| !!|||||||||! !.!. !|||! !||||||||| ! rgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluLeuAsnTyrCysCy 232644 : GGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAATTGAATTATTGCTG : 232700 96 : rLeuLeuLeuArgArgLysGluIleHisTyrCysIleLysGlnIleAsnSerAspTrp : 114 !|||||| !!:! !!!.!!:|||! !||||||:!::!!|||:!:!!...!|||||| sLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnValLysGlnAspTrp 232701 : CTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGTGAAACAGGACTGG : 232757 115 : ArgThrValLysArgProAspAlaGlnGlnValMetLeuLysAspAlaLysPheGlyA : 134 |||!.!||||||!:!|||! ! !!::.!.:!!|||||||||:!!||||||.!!|||| ArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsnAlaLysLeuGlyA 232758 : CGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAACGCGAAACTTGGAC : 232817 135 : rgSerValAlaAlaPheCysAlaIlePheMetGlnGlyGlyValPheCysPheSerVa : 153 |||||:!!|||..!.!!..!|||.!!! !|||!!. !|||||| !! ! !..!:! rgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValGlySerAspGluIl 232818 : GTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCGGCTCCGACGAAAT : 232874 154 : lAlaThrValPheThrMetGluIleValGlnValGlyAsnGluThrArgAlaValHis : 172 !!.!|||! !.!! !|||...! !! ! ||||||||||||!:! !:!!:!!:!! eValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSerTyrSerMetTyr 232875 : AGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAGTTACTCGATGTAC : 232931 173 : ThrPheProCysProAlaTyrArgLysLeuIleProValAspAsnAsnPheLeuCysG : 192 !!!!.|||||| !! !|||! !||||||!!: !..! !!:! ! !| ProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPheSerProThrAsnG 232932 : CCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTCAGTCCGACGAACG : 232991 193 : luIlePheLeuAlaValGlnPheLeuCysValPheIleValAsnSerThrIleValGl : 211 |||||.!.!!!!.!:!!|||! !|||! !! !|||||||||||||||..!! !||||| luIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnSerValThrValGl 232992 : AGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGG : 233048 212 : yAlaPheSerLeuAlaIleValPheAlaSerHisValTyrGlyGlnLeuAspIleLeu : 230 ||||! !.!!|||!.! !|||.!.|||! !|||!.!! !|||||||||:!!:!::!! yAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGlnLeuAsnValVal 233049 : AGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACAGCTGAACGTGGTG : 233105 231 : MetValTrpValThrGluTyrValAsnLysSerGluGluMetHisLysAsnArgTrpA : 250 ||| ! :!! !!!:! |||:!! !!.!! !:!! !.!.!:! ! ! !! MetSerLysLeuAspAspLeuValAspAlaLysGlyGlnGluGluArgValAlaGlnA 233106 : ATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAGGAGGAGAGAGTCGCGCAGA : 233165 251 : snGlnIleGlyValPheValGluAsnHisValLysIleLeu{Ar} >>>> Target : 264 ..:!!:!!||| !!.!!||||||:!!|||:!!:::! !|||{!!} 13 rgLysLeuGlyPheIleValGluHisHisLeuArgThrLeu{Se}++ 233166 : GGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTA{AG}gt........... : 233211 265 : Intron 1 >>>> {g}PheIleAlaHisIleGluGlnValMetSerProIleCys : 277 15 bp {!}|||||| !:!!||||||.!.||||||!:!! !|||||| ++{r}PheIleArgAsnIleGluAsnValMetAsnLeuIleCys 233212 : ..............ag{T}TTTATACGGAATATAGAGAACGTTATGAACCTAATATGC : 234561 278 : LeuSerGluLeuCysGlnCysThrLeuSerMetCysThrLeuCysTyrTyrIleIleM : 297 ||| !|||||| !|||||||||!:!||||||! !||| ||||||:!!:!!! LeuValGluLeuValGlyCysThrLeuAsnMetCysMetLeuGluTyrTyrLeuLeuT 234562 : CTGGTTGAGTTGGTAGGATGCACGTTGAACATGTGCATGCTCGAGTATTATTTACTCA : 234621 298 : et >>>> Target Intron 2 >>>> GluTrpGluGluHisAspValGlnAsn : 306 ! 189 bp ||| ...::: :::... hr++ ++GluLysSerLys---------GluLys 234622 : CGgt.........................agGAAAAgtcgaag---------gaaaaa : 234828 307 : LeuThrSerTyrAlaMetIleLeuValSerValThrPheAsnValPheIleMetCysT : 326 |||.!!||||||!.!!!::!:! !||||||:!!|||||||||:::||||||...|||| LeuAlaSerTyrValIleValTyrValSerMetThrPheAsnIlePheIlePheCysT 234829 : ttagCTTCATACGTCATCGTGTACGTGTCCATGACATTtaatatattcatattttgtt : 234888 327 : yrIleGlyGluValLeuMetGluGln >>>> Target Intron 3 >>>> Cys : 335 |||||||||||..!|||! |||||| 74 bp ||| yrIleGlyGluThrLeuThrGluGln++ ++Cys 234889 : ACATCGGAGAGACGCTTACAGAGCAGgt.........................agTGT : 234989 336 : AsnArgValAlaAspValValTyrMetThrAsnTrpTyrCysMetProTyrArgSerI : 355 !.!!:!|||!.!!!: !||||||||||||.!.|||||| ! :!:|||:!!!:!!!! ThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrA 234990 : ACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATAAAACTG : 235049 356 : leLeuAspLeuIleLeuIleIleSerArgSerAsnValValThrLysIleThrAlaGl : 374 !|||! !|||:!!:!!|||||||||||||||!:!:!!|||! !|||||||||||||| laLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGl 235050 : CTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCACCGCTGG : 235106 375 : yLysValIleTyrMetSerIleTyrThrPheGlyAspVal : 387 |||| !!:!! ! ||||||:!! ||||||||||||||| yLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235107 : AAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: gi|383850520|ref|XP_003700843.1| 0 387 . KQ414889.1 232411 235147 + 759 M 35 105 G 0 6 M 228 684 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 33 99 5 0 2 I 0 185 3 0 2 M 4 12 G 3 0 M 30 90 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232412 235147 759 + . gene_id 4 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232412 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232412 233208 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232412 235147 759 + . alignment_id 4 ; Query gi|383850520|ref|XP_003700843.1| ; Align 232412 1 105 ; Align 232523 36 684 ; Align 234525 265 99 ; Align 234813 298 12 ; Align 234825 305 90 ; Align 234989 335 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 759 Query range: 2 -> 264 Target range: 266595 -> 267390 3 : AspGluSerThrIleGlnGlnAsnProIleGlyLeuSerAspTyrSerLeuGlnLeuA : 22 !!:..!! !..!|||:!! !|||! !! !.!!||||||||||||||||||||||||| GluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerLeuGlnLeuA 266596 : GAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCCTGCAATTGA : 266653 23 : snArgTrpPheLeuLysProIleGlyValTrpPro<-><->ValLeuThrSerArgAs : 39 ||||||||||||||||||||||||||!.!|||||| !|||||||||!:! snArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuThrSerLysLe 266654 : ATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCACATCTAAACT : 266710 40 : nGluLysIleValSerLeuThrLeuAsnValIleCysTyrCysSerIleLeuValThr : 58 !|||::!|||||||||! !.!!|||! !|||||||||||||||||||||||| !!||| uGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIleLeuPheThr 266711 : CGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATACTGTTCACC : 266767 59 : ValValProCysLeuLeuArgIlePheLeuGluAspAspAspLeuLeuAlaLysLeuL : 78 |||:!!|||||||||!!!!.!:!! !!|||||||||!!:..!:!!! !.!!|||:!!| ValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgThrLysValL 266768 : GTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTACGAAAGTGA : 266827 79 : ysMetThrGlyAlaMetSerHisCysPheAlaGlyGlyLeuAsnTyrThrThrLeuLe : 97 ||:!! !||| !!:!!||||||!! |||!.!||||||:!!||||||||||||||||| ysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrThrThrLeuLe 266828 : AGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACACCACACTGTT : 266884 98 : uLeuArgArgLysGluIleHisTyrCysIleLysGlnIleAsnSerAspTrpArgThr : 116 |||||||!!!|||||||||!.! !|||:!!:!!!!.!!:.!.!!!|||||||||! ! uLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIle 266885 : GCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGATTGGAGGATC : 266941 117 : ValLysArgProAspAlaGlnGlnValMetLeuLysAspAlaLysPheGlyArgSerV : 136 |||! ||||||!!:! !:!!|||||||||||||||:!!|||!:!.!!||||||! !: ValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleGlyArgTyrI 266942 : GTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCGGTCGTTACA : 267001 137 : alAlaAlaPheCysAlaIlePheMetGlnGlyGlyValPheCysPheSerValAlaTh : 155 !!||| !||||||||| ||||||||| !!||||||.!! !!!:!!!!||| !|| leAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCysValIleTh 267002 : TTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGTGATAAC : 267058 156 : rValPheThrMetGluIleValGlnValGlyAsnGluThrArgAlaValHisThrPhe : 174 |!.!|||||||||:!!! !|||:!!|||||||||||||||||| !|||||| !!!. rAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleValHisLeuLeu 267059 : GGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTACATCTGTTG : 267115 175 : ProCysProAlaTyrArgLysLeuIleProValAspAsnAsnPheLeuCysGluIleP : 194 |||||| !!!.!|||!:!|||:!!||| !!||||||!.!!:! ! !|||||| ProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrAsnGluIleV 267116 : CCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGAACGAGATTG : 267175 195 : heLeuAlaValGlnPheLeuCysValPheIleValAsnSerThrIleValGlyAlaPh : 213 !!|||!.! !||||||:!!! ! !|||||||||||||||!:!:!!||||||||||| alLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValValGlyAlaPh 267176 : TCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCGGTGCTTT : 267232 214 : eSerLeuAlaIleValPheAlaSerHisValTyrGlyGlnLeuAspIleLeuMetVal : 232 |||||||||| !|||||||||:!!|||!.!! !|||||||||..!:!:||||||:!! eSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerValLeuMetMet 267233 : CAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTGATGATG : 267289 233 : TrpValThrGluTyrValAsnLysSerGluGluMetHisLysAsn<->ArgTrpAsnG : 251 |||:!!! !|||!:!||||||::!|||..!!!:! :!!|||||| !!!:::!!: TrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValCysPheAspL 267290 : TGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTTGCTTCGATA : 267349 252 : lnIleGlyValPheValGluAsnHisValLysIleLeuArg : 264 !!||||||||| !!||||||:!!|||:!!!:!:!!|||||| ysIleGlyValValValGluHisHisLeuArgValLeuArg 267350 : AGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGAGG : 267390 vulgar: gi|383850520|ref|XP_003700843.1| 2 264 . KQ414889.1 266595 267390 + 759 M 31 93 G 0 6 M 214 642 G 0 3 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266596 267390 759 + . gene_id 5 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266596 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266596 267390 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266596 267390 759 + . alignment_id 5 ; Query gi|383850520|ref|XP_003700843.1| ; Align 266596 3 93 ; Align 266695 34 642 ; Align 267340 248 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 659 Query range: 12 -> 264 Target range: 262837 -> 263602 13 : GlyLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyValT : 32 .!!|||||||||||||||||||||:!!|||||||||.!.|||||||||||||||!.!| SerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaT 262838 : AGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCAT : 262895 33 : rpProValLeuThr<-><->SerArgAsnGluLysIleValSerLeuThrLeuAsnVa : 49 |||||:!!! !.!! ||||||! |||::!|||:!!!!!!!! !|||! !|| rpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleVa 262896 : GGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGT : 262952 50 : lIleCysTyrCysSerIleLeuValThrValValProCysLeuLeuArgIlePheLeu : 68 |:!!||||||||| !|||||| !||||||:!!|||! !:!!|||!.!||| !!||| lValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeu 262953 : CGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTA : 263009 69 : GluAspAspAspLeuLeuAlaLysLeuLysMetThrGlyAlaMetSerHisCysPheA : 88 |||! !!!::!!!!!! ! !||||||:!!:!: !||| !!:!:.!!!!.!! |||! GluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheV 263010 : GAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCG : 263069 89 : laGlyGlyLeuAsnTyrThrThrLeuLeuLeuArgArgLysGluIleHisTyrCysIl : 107 .!||| !:!!||||||||| !|||||||||!.!!!!|||!!:|||!!. !|||:! alGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysVa 263070 : TCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGT : 263126 108 : eLysGlnIleAsnSerAspTrpArgThrValLysArgProAspAlaGlnGlnValMet : 126 ::!!!!.:!:.!...!|||||| !!! !|||! ||| !!!:! !|||!:::!!||| lGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMet 263127 : GCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATG : 263183 127 : LeuLysAspAlaLysPheGlyArgSerValAlaAlaPheCysAlaIlePheMetGlnG : 146 ||||||:!!||||||!:!||||||! !|||||||||! !|||||||||||||||||| LeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnT 263184 : CTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAA : 263243 147 : lyGlyValPheCysPheSerValAlaThrValPheThrMetGluIleValGlnValGl : 165 !.!!:!!.!.||| !!!:!!!.!|||!.!||||||! :!!:!::!!:!!! !|| hrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGl 263244 : CGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGG : 263300 166 : yAsnGluThrArgAlaValHisThrPheProCysProAlaTyrArgLysLeuIlePro : 184 ||||||||||||| !:!!!.!! !.!.|||||||||!.!|||!:!:!!:!!|||||| yAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLysGluIleIlePro 263301 : TAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCA : 263357 185 : ValAspAsnAsnPheLeuCysGluIlePheLeuAlaValGlnPheLeuCysValPheI : 204 ||||||!..||| ! !|||||||||||||||..!|||||||||! ! !|||| ValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheI 263358 : GTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCA : 263417 205 : leValAsnSerThrIleValGlyAlaPheSerLeuAlaIleValPheAlaSerHisVa : 223 |||||!.!:!!|||! !||||||||||||.!!:!!.!! |||||||||.!!|||!. leValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAl 263418 : TCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGC : 263474 224 : lTyrGlyGlnLeuAspIleLeuMetValTrpValThrGluTyrValAsnLysSerGlu : 242 !! !|||||||||:!!:!:|||||| !|||:!!||||||!:!||||||:!!|||..! aCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArg 263475 : TTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGG : 263531 243 : GluMetHisLysAsnArgTrp<->AsnGlnIleGlyValPheValGluAsnHisValL : 261 !!: !:!!||||||! !!:: !.!:!!|||||||||.!!||||||:!!|||:!!! AspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuA 263532 : GATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGA : 263591 262 : ysIleLeuArg : 264 :!:!!|||||| rgValLeuArg 263592 : GAGTTCTGAGG : 263602 vulgar: gi|383850520|ref|XP_003700843.1| 12 264 . KQ414889.1 262837 263602 + 659 M 24 72 G 0 6 M 213 639 G 0 3 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262838 263602 659 + . gene_id 6 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262838 263602 . + . KQ414889.1 exonerate:protein2genome:local exon 262838 263602 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262838 263602 659 + . alignment_id 6 ; Query gi|383850520|ref|XP_003700843.1| ; Align 262838 13 72 ; Align 262916 37 639 ; Align 263558 250 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 519 Query range: 9 -> 273 Target range: 236831 -> 237626 10 : AsnProIleGlyLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI : 29 ||| !! !!.! !||||||||||||||||||! !||||||||| :!!||| !| AsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerI 236832 : AATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCA : 236889 30 : leGlyValTrpProValLeuThrSerArgAsnGluLysIleValSerLeuThrLeuAs : 48 |||||..!|||||| !!!!:!!|||!.! !|||!:!! !:!!|||! !! !||||| leGlyThrTrpProGlnPheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAs 236890 : TAGGCACATGGCCACAGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAA : 236946 49 : nValIleCysTyrCysSerIleLeuValThrValValProCysLeuLeuArgIlePhe : 67 ||||||||||||| !:!!|||||| !!:!!:!!:!!||||||! !|||!.!:!!.!. nValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMet 236947 : CGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATG : 237003 68 : LeuGluAspAspAspLeuLeuAlaLysLeuLysMetThrGlyAlaMetSerHisCysP : 87 |||||| ! ! !!!!! !.!!|||:!!|||!!: !|||:!!:!!||||||!! LeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpV 237004 : CTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGG : 237063 88 : heAlaGlyGlyLeuAsnTyrThrThrLeuLeuLeuArgArgLysGluIleHisTyrCy : 106 ! ! !! !:!!!:!||||||! !|||||||||||||||||| |||!.!:!!! alPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPh 237064 : TGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTT : 237120 107 : sIleLysGlnIleAsnSerAspTrpArgThrValLysArgProAspAlaGlnGlnVal : 125 !.!!!!.!!.!!:.!.!!!||||||||||||..! ||| ::: ::::::||| ePheAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluVal 237121 : TTTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtc : 237177 126 : MetLeuLysAspAlaLysPheGlyArgSerValAlaAlaPheCysAlaIlePheMetG : 145 ||||||||| !!|||||||||.!!|||! !!.!||| !! !|||.!!||||||!!:! MetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleH 237178 : ATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATAC : 237237 146 : lnGlyGlyValPheCysPheSerValAlaThrValPheThrMetGluIleValGlnVa : 164 !.||||||:!!.!! ! !:!!!!||| !|||!.!! !|||! ! !:!!||| !|| isGlyGlyIleLeuGlyTyrCysValMetThrAlaSerThrThrMetValValValVa 237238 : ACGGTGGTATACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGT : 237294 165 : lGlyAsnGluThrArgAlaValHisThrPheProCysProAlaTyrArgLysLeuIle : 183 |||||||:!!|||! ! !:!!!.!..!.!.|||! ||| !|||!:! !|||:!! lGlyAsnLysThrThrIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeu 237295 : TGGAAACAAGACTACGATCTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTT : 237351 184 : ProValAspAsnAsnPheLeuCysGluIlePheLeuAlaValGlnPheLeuCysValP : 203 |||||||||!..||| !:!! !!!:||| !!:!! ! !|||||||||! !! !| ProValAspThrAsnThrMetAsnAspIleValValLeuSerGlnPheLeuSerGlyP 237352 : CCAGTCGATACGAATACTATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGAT : 237411 204 : heIleValAsnSerThrIleValGlyAlaPheSerLeuAlaIleValPheAlaSerHi : 222 |||||!.!|||!:!!:! :!!.!!!.!.!.||||||.!!! !!.!.!..!!||||| heIleAlaAsnAsnSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHi 237412 : TTATAGCGAACAACAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACA : 237468 223 : sValTyrGlyGlnLeuAspIleLeuMetValTrpValThrGluTyrValAsnLysSer : 241 |!.!! !|||||||||..!:!::!!|||:!!! !:!! !!!:!:!|||!:!:!!:!! sAlaSerGlyGlnLeuSerValValMetLeuSerIleGluAspPheValSerGluAla 237469 : CGCGTCTGGCCAGTTGAGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCG : 237525 242 : GluGluMetHisLys<->AsnArgTrpAsnGlnIleGlyValPheValGluAsnHisV : 260 ..!...! ||| :!!!.!!:::!!:!!||| !..!.!!||||||.!.|||: ArgArgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluGluHisL 237526 : AGACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGGAACATT : 237585 261 : alLysIleLeuArgPheIleAlaHisIleGluGlnValMet : 273 !!!:!:!:|||!:!! :!!..! :!:!!: !:!!:!! euArgValLeuLys***ValCysLeuLeuAspLeuIleLeu 237586 : TGAGAGTGTTGAAGTAAGTATGTTTGTTGGATTTGATTTTG : 237626 vulgar: gi|383850520|ref|XP_003700843.1| 9 273 . KQ414889.1 236831 237626 + 519 M 237 711 G 0 3 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236832 237626 519 + . gene_id 7 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236832 237626 . + . KQ414889.1 exonerate:protein2genome:local exon 236832 237626 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 236832 237626 519 + . alignment_id 7 ; Query gi|383850520|ref|XP_003700843.1| ; Align 236832 10 711 ; Align 237546 247 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 493 Query range: 16 -> 402 Target range: 278576 -> 280551 17 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpPro<-><->V : 34 ||||||:!!|||:!!|||||||||||||||||||||||||||||||||||| : TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 35 : alLeuThrSerArgAsnGluLysIleValSerLeuThrLeuAsnValIleCysTyrCy : 53 !!! !..!!!!! ! ||||||||| !|||:!!..!||| :!!||| !!! !! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 54 : sSerIleLeuValThrValValProCysLeuLeuArgIlePheLeuGlu<->AspAsp : 71 ! !||| ! !! !:!!||||||||| !||| !!! ! ! |||!!: !! ! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 72 : AspLeuLeuAlaLysLeuLysMetThrGlyAlaMetSerHisCysPheAlaGlyGlyL : 91 |||||| !.!!|||:!!||||||! !||| !!:!:||| !||| !!.! !: AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 92 : euAsnTyrThrThrLeuLeuLeuArgArgLysGluIleHisTyrCysIleLysGlnIl : 110 !!!!.||| !! !|||:!!! !||| !! :!!||| ! ! |||:!:!!..!.|| leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 111 : eAsnSerAspTrpArg<-><-><->ThrValLysArgProAspAlaGlnGlnValMet : 126 |..!!!!|||||| ! :!! !:::::: ::: :::::::::||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 127 : LeuLysAspAlaLysPheGlyArgSerValAlaAlaPheCysAlaIlePheMet<->G : 145 ! ! ..!|||!:!.!!|||||||||:!!||| !||| !!||| !|||||| . ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 146 : lnGlyGlyValPheCysPheSerValAlaThrValPheThrMetGluIleValGlnVa : 164 ..||||||||||||! ! !:!!||| ! !!:!!|||.!!:!:...! ! ! :! erGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIl 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCAT : 279039 165 : lGlyAsnGluThrArgAlaValHisThrPheProCysProAlaTyrArgLysLeuIle : 183 !! !||||||||| ! ! !!!..!!||| ||| !|||||| |||:!! eAspAsnGluThrValArgSerGlnAlaPhe------ProIleTyrArgGlyLeuLeu 279040 : CGACAATGAAACGGTGAGATCTCAAGCGTTC------CCGATCTATCGCGGCCTCCTC : 279090 184 : ProValAspAsnAsnPheLeuCysGluIlePheLeuAlaValGlnPheLeuCysValP : 203 ! ! !!.!!:! ! !! !|||||| ! ! ! !:!!|||! !|||..!!.!| AspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaP 279091 : GATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGT : 279150 204 : heIleValAsnSerThrIleValGlyAlaPheSerLeuAlaIleValPheAlaSerHi : 222 ||:!!:!! !!|||..!! !|||||||||! !|||||| ! !||||||!.!! !|| heValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHi 279151 : TCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCA : 279207 223 : sValTyrGlyGlnLeuAspIleLeuMetValTrpValThrGluTyrValAsn<-><-> : 240 ||||! !||||||!!! ||||||:!!..! !:!! !:!! !:!!:!! sValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyVal 279208 : CGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTG : 279264 241 : LysSerGluGluMetHisLysAsnArgTrpAsnGlnIleGlyValPheValGluAsnH : 259 |||.!!..!:!!! !..!..!.! .!.!:!:!:|||! !.!!:!!|||:!!| LysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisH 279265 : AAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATC : 279324 260 : isValLysIleLeu{Ar} >>>> Target Intron 1 >>>> {g}PheIleAl : 267 ||:!!|||||||||{ !} 657 bp {!}!!..!!.! isLeuLysIleLeu{Gl}++ +-{y}LeuPheTh 279325 : ATCTGAAGATACTG{GG}gt.........................at{A}TTATTTAC : 280005 268 : aHisIleGluGlnValMetSerProIleCysLeuSerGluLeuCysGlnCysThrLeu : 286 !||| !.!.::! ..! !:!!|||! !! !.!.:!! ..!...! !:!! rHisGlyAsnArg------AspAspLeuCysTyrPheHisIleValMetAlaLysIle 280006 : TCACGGTAACAGA------GACGACTTATGTTATTTCCATATTGTAATGGCAAAAATT : 280056 287 : SerMetCysThrLeuCysTyrTyrIleIleMetGluTrpGluGluHisAspValGlnA : 306 :!!.!. !! !! !! ! ! :!!.!! !|||||||||:!!:!!|||!.! !. AlaPheValMetTyrSerLeuSerValPhe***GluTrpGluGlnAsnAspAlaIleG 280057 : GCATTCGTCATGTACTCGTTGTCAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAG : 280116 307 : snLeuThrSerTyrAlaMetIleLeuValSerValThrPheAsnValPheIleMetCy : 325 .. ! !!!!||| !|||.!!|||:!!|||:!!||||||||||||||||||:!:|| lyThrPheThrTyrLeuMetPheLeuIleSerLeuThrPheAsnValPheIleLeuCy 280117 : GAACGTTCACGTATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTG : 280173 326 : sTyrIleGlyGluValLeuMetGluGln >>>> Target Intron 2 >>>> C : 335 |||||||||||||:!!||| |||||| 74 bp | sTyrIleGlyGluIleLeuSerGluGln++ ++C 280174 : TTACATCGGTGAAATTCTCTCCGAACaggt.........................agT : 280277 336 : ysAsnArgValAlaAspValValTyrMetThrAsnTrpTyrCysMetProTyrArgSe : 354 || !:!|||!.!! !..!||||||! !:!!|||||| !!:!!||| !:!!. ysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLy 280278 : GCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAA : 280334 355 : rIleLeuAspLeuIleLeuIleIleSerArgSerAsnValValThrLysIleThrAla : 373 ! !! !! !||||||||||||.!!:!! !|||||| ! !! !|||:!!|||||| sAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAla 280335 : AGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCT : 280391 374 : GlyLysValIleTyrMetSerIleTyrThrPheGlyAsp >>>> Target Intro : 387 ||||||:!!||| !!:!:|||:!! !!:!||| !!..! 71 bp GlyLysIleIleAspLeuSerLeuSerSerPheCysSer++ 280392 : GGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt................. : 280435 388 : n 3 >>>> ValLeuLysThrAlaPheThrTyrLeuAsnIleLeuArgGlnThrThr : 402 ||||||||||||||||||.!!||||||!:!:!!|||||| ! !||| ++ValLeuLysThrAlaPheAlaTyrLeuSerLeuLeuArgThrLeuThr 280436 : ........agGTGTTAAAAACGGCATTCGCATATCTGAGCTTATTACGTACGCTTACC : 280549 vulgar: gi|383850520|ref|XP_003700843.1| 16 402 . KQ414889.1 278576 280551 + 493 M 17 51 G 0 6 M 36 108 G 0 3 M 46 138 G 0 9 M 29 87 G 0 3 M 30 90 G 2 0 M 63 189 G 0 6 M 24 72 S 0 2 5 0 2 I 0 653 3 0 2 S 1 1 M 7 21 G 2 0 M 61 183 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 280551 493 + . gene_id 8 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278577 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279340 . + . insertions 27 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279997 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279996 279997 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 279998 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 279998 280202 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280551 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278577 280551 493 + . alignment_id 8 ; Query gi|383850520|ref|XP_003700843.1| ; Align 278577 17 51 ; Align 278634 34 108 ; Align 278745 70 138 ; Align 278892 116 87 ; Align 278982 145 90 ; Align 279072 177 189 ; Align 279267 240 72 ; Align 279999 265 21 ; Align 280020 274 183 ; Align 280277 335 156 ; Align 280504 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 383 Query range: 294 -> 401 Target range: 264528 -> 265007 295 : IleIleMetGluTrpGluGluHisAspValGlnAsnLeuThrSerTyrAlaMetIleL : 314 :!!.!!..!|||||||||...||||||:::||||||||||||!!!||| !||||||| ValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleL 264529 : GTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATAC : 264586 315 : euValSerValThrPheAsnValPheIleMetCysTyrIleGlyGluValLeuMetGl : 333 ||:!!|||:!! ! !|||:!!|||:!!||||||||||||||||||:!!|||! || euIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGl 264587 : TGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGA : 264643 334 : uGln >>>> Target Intron 1 >>>> CysAsnArgValAlaAspValValT : 343 |||| 78 bp |||!!.!:!|||!.!!!:||||||| uGln++ ++CysLysLysValGlyGluValValT 264644 : Gcaggt.........................agTGTAAGAAAGTTGGTGAGGTGGTTT : 264751 344 : yrMetThrAsnTrpTyrCysMetProTyrArgSerIleLeuAspLeuIleLeuIleIl : 362 |||||:!!|||||||||! !:!:||||||!:!..!||||||||||||||||||||||| yrMetSerAsnTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLeuIleIl 264752 : ACATGTCGAATTGGTATTACTTACCCTACAAAGATATCCTTGATCTGATTCTCATCAT : 264808 363 : eSerArgSerAsnValValThrLysIleThrAlaGlyLysValIleTyrMetSerIle : 381 |! !||||||!:!|||||| !|||.!!||||||||||||:!!:!!:!!||||||!!: eLeuArgSerSerValValPheLysPheThrAlaGlyLysIleLeuHisMetSerMet 264809 : TTTAAGATCCAGCGTGGTGTTTAAATTCACCGCTGGAAAGATACTTCACATGTCCATG : 264865 382 : TyrThrPheGlyAsp >>>> Target Intron 2 >>>> ValLeuLysThrAl : 391 |||||||||.!!||| 80 bp |||:!!|||:!!:! TyrThrPheSerAsp++ ++ValIleLysSerSe 264866 : TACACATTCAGTGACgt.........................aggTAATCAAATCCTC : 264975 392 : aPheThrTyrLeuAsnIleLeuArgGlnThr : 401 !|||||||||||||||:!!|||||||||||| rPheThrTyrLeuAsnLeuLeuArgGlnThr 264976 : TTTCACGTACTTAAACTTACTTCGCCAAACG : 265007 vulgar: gi|383850520|ref|XP_003700843.1| 294 401 . KQ414889.1 264528 265007 + 383 M 40 120 5 0 2 I 0 74 3 0 2 M 52 156 5 0 2 I 0 76 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264529 265007 383 + . gene_id 9 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264529 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264529 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264726 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265007 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265007 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264529 265007 383 + . alignment_id 9 ; Query gi|383850520|ref|XP_003700843.1| ; Align 264529 295 120 ; Align 264727 335 156 ; Align 264963 387 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 356 Query range: 297 -> 402 Target range: 277371 -> 277842 298 : GluTrpGluGluHisAspValGlnAsnLeuThrSerTyrAlaMetIleLeuValSerV : 317 ||||||...!!: !|||||||||!..:!!|||!!!:!! !|||||||||:!!|||: GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 318 : alThrPheAsnValPheIleMetCysTyrIleGlyGluValLeuMetGluGln >>> : 335 !: ||||||:::||| !:!:|||||||||||||||:!!|||! |||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 336 : > Target Intron 1 >>>> CysAsnArgValAlaAspValValTyrMetThrA : 346 72 bp |||!!.!:!|||!.!!!:|||||||||||||||| ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 347 : snTrpTyrCysMetProTyrArgSerIleLeuAspLeuIleLeuIleIleSerArgSe : 365 ||||||||! !:!:||| !!!:!..!||||||:!!|||:!!||||||||||||||||| snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 366 : rAsnValValThrLysIleThrAlaGlyLysValIleTyrMetSerIleTyrThrPhe : 384 |!:!:::||| ||||||||||||||||||:::||| ||||||:!:||||||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 385 : GlyAsp >>>> Target Intron 2 >>>> ValLeuLysThrAlaPheThrTy : 394 |||||| 84 bp |||:!!||||||.!!|||...|| GlyAsp++ ++ValIleLysThrThrPheAlaTy 277703 : GGCGATgt.........................agGTAATAAAAACCACTTTCgcgta : 277816 395 : rLeuAsnIleLeuArgGlnThrThr : 402 ||||||||||||||||||||||||| rLeuAsnIleLeuArgGlnThrThr 277817 : tttaaatattctacgCCAAACGACG : 277842 vulgar: gi|383850520|ref|XP_003700843.1| 297 402 . KQ414889.1 277371 277842 + 356 M 37 111 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277842 356 + . gene_id 10 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277842 356 + . alignment_id 10 ; Query gi|383850520|ref|XP_003700843.1| ; Align 277372 298 111 ; Align 277555 335 156 ; Align 277795 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 354 Query range: 17 -> 266 Target range: 221381 -> 222134 18 : SerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpPro<-><->ValL : 35 |||:!!||||||!:!||||||.!!|||||||||||||||||||||||| !.! SerValGlnLeuSerArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaA 221382 : AGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCA : 221439 36 : euThrSerArgAsnGluLysIleValSerLeuThrLeuAsnValIleCysTyrCysSe : 54 !! !|||! ! |||!:! !:!!! !! ! !:!!||||||:!!|||||| !! snIleSerThrValGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLe 221440 : ACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCT : 221496 55 : rIleLeuValThrValValProCysLeuLeuArgIlePheLeuGluAspAspAspLeu : 73 !||| ! !! !:!!||||||||| !||| !:!:.!!||||||! !!:|||:!! uIleThrPheLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspVal 221497 : GATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTC : 221553 74 : LeuAlaLysLeuLysMetThrGlyAlaMetSerHisCysPheAlaGlyGlyLeuAsnT : 93 ! ! !!:!:!!|||:!! !||| !!:!!||| !||| ! !!.! !|||!!.| TyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysT 221554 : TACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGT : 221613 94 : yrThrThrLeuLeuLeuArgArgLysGluIleHisTyrCysIleLysGlnIleAsnSe : 112 || ! !|||:!!||| !..!!!.!!:|||!.! ! ||||||:!!!::|||.!.!! yrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTr 221614 : ATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATG : 221670 113 : rAspTrpArgThrValLysArgProAspAlaGlnGlnValMetLeuLysAspAlaLys : 131 !||||||!:!!.!:!!! ! !! ! ! !:!!.!.:!!|||:!!:!!:!!|||! pAspTrpLysAsnIleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIle 221671 : GGATTGGAAGAATATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATT : 221727 132 : PheGlyArgSerValAlaAlaPheCysAlaIlePheMetGlnGlyGlyValPheCysP : 151 ||||||||| !!:!! ! !.!!|||.!!.!!|||||| ! .!!||| : PheGlyArgArgLeuIleMetIleCysThrPhePheMetTyrSerGlyPheValPheT 221728 : TTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGTACAGTggtttcgtttttt : 221787 152 : heSerValAlaThrValPheThrMetGluIleValGlnValGlyAsnGluThrArgAl : 170 :: ::!|||! ! !|||!:!:!!! ! !:!!! !.! !:!! ... .. yrTyrIleAlaIleProPheSerValGlyLysIleProAlaGlnAspValAsnValTh 221788 : attacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaac : 221844 171 : aValHisThrPheProCysProAlaTyrArgLysLeuIleProValAspAsnAsnPhe : 189 . !!.!. !! !||| !! ||| :!!:!! !..! !!!:! ! rPheIleProMetValPheProPheSerArgPheIleValAspThrArgTyrSerPro 221845 : ttttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCT : 221901 190 : LeuCysGluIlePheLeuAlaValGlnPheLeuCysValPheIleValAsnSerThrI : 209 :!! !||||||.!.!!!:!!:!!|||.!!:!!...! ! !:!::!!:!!|||! !! ValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleT 221902 : GTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTA : 221961 210 : leValGlyAlaPheSerLeuAlaIleValPheAlaSerHisValTyrGlyGlnLeuAs : 228 ! !!.!|||! !||||||!.! !:!!|||||| !|||!.!! !||||||:!!.! hrSerAlaAlaCysSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMetGl 221962 : CATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCA : 222018 229 : pIleLeuMetValTrpValThrGluTyrValAsnLysSerGluGluMetHisLysAsn : 247 .:!:|||||| !|||:!!! !.!.! :!!||| !!! !!!:||| !!!.||| nValLeuMetSerTrpLeuLysHisLeuIleAsnGlyArgAlaAspMetCysAsnAsn 222019 : AGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGCCGGGCGGATATGTGTAACAAC : 222075 248 : ArgTrpAsnGlnIleGlyValPheValGluAsnHisValLysIleLeuArgPheIle : 266 ! !..::!|||!.! !.!!|||.!..!.||||||::!||||||!:!!:!:!! ValAspArgArgIleAlaLysIleValAsnGlnHisValArgIleLeuGlnTyrVal 222076 : GTGGATAGGAGAATAGCGAAGATTGTGAATCAACACGTTCGAATATTGCAGTATGTA : 222134 vulgar: gi|383850520|ref|XP_003700843.1| 17 266 . KQ414889.1 221381 222134 + 354 M 16 48 G 0 6 M 233 699 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221382 222134 354 + . gene_id 11 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221382 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221382 222134 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221382 222134 354 + . alignment_id 11 ; Query gi|383850520|ref|XP_003700843.1| ; Align 221382 18 48 ; Align 221436 34 699 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 300 Query range: 264 -> 402 Target range: 210498 -> 212081 265 : PheIleAlaHisIleGluGlnValMetSerProIleCysLeuSerGluLeuCysGlnC : 284 |||||||||! ! !|||.!.:!!:!! ! !|||! |||! !|||:!! !| PheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGluMetValGlyC 210499 : TTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAATGGTGGGGT : 210556 285 : ysThrLeuSerMetCysThrLeuCysTyrTyrIleIleMet >>>> Target Int : 298 ||||||||!:!|||||| !||| !!||||||! !!:!!: 66 bp ysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210557 : GCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt............... : 210600 299 : ron 1 >>>> GluTrpGluGluHisAspValGlnAsnLeuThrSerTyrAlaMetI : 313 ||||||!!:... ! ||| ! !:! ! !!!!||| !:!:: ++GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValL 210601 : ..........agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTAC : 210709 314 : leLeuValSerValThrPheAsnValPheIleMetCysTyrIleGlyGluValLeuMe : 332 !!|||..!|||||||||||||||:!!||||||.!.||||||||||||||||||||| euLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAl 210710 : TCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGC : 210766 333 : tGluGln >>>> Target Intron 2 >>>> CysAsnArgValAlaAspValV : 342 |||||| 999 bp !:!|||!.!!!: ! aGluGln++ ++ThrValLysValGlyGluLysS 210767 : TGAACAggt.........................agACAGTAAAAGTTGGAGAAAAGT : 211795 343 : alTyrMetThrAsnTrpTyrCysMetProTyrArgSerIleLeuAspLeuIleLeuIl : 361 !||||||! !:!!|||||| ! |||||| !:!!.! !|||! !:!! !|||!! erTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValValProLeuMe 211796 : CTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGAT : 211852 362 : eIleSerArgSerAsnValValThrLysIleThrAlaGlyLysValIleTyrMetSer : 380 :||||||! !|||:!! !..!||||||||||||||||||!!.:!!||| !:!:||| tIleSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleValLeuSer 211853 : GATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTTCTTTCA : 211909 381 : IleTyrThrPheGlyAsp >>>> Target Intron 3 >>>> ValLeuLysTh : 390 ||| !!:!||||||||| 104 bp |||:!!||||| IleSerSerPheGlyAsp++ ++ValIleLysTh 211910 : ATCAGTAGTTTCGGTGACgt.........................agGTTATCAAGAC : 212043 391 : rAlaPheThrTyrLeuAsnIleLeuArgGlnThrThr : 402 |:!! ! ||||||||||||!!:|||||| ! !||| rSerValThrTyrLeuAsnMetLeuArgThrPheThr 212044 : TTCGGTAACATACTTGAACATGCTACGAACATTCACA : 212081 vulgar: gi|383850520|ref|XP_003700843.1| 264 402 . KQ414889.1 210498 212081 + 300 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 995 3 0 2 M 52 156 5 0 2 I 0 100 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210499 212081 300 + . gene_id 12 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 210499 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210499 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211929 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 211930 211931 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 211930 212033 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 212032 212033 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 212034 212081 . + . KQ414889.1 exonerate:protein2genome:local exon 212034 212081 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210499 212081 300 + . alignment_id 12 ; Query gi|383850520|ref|XP_003700843.1| ; Align 210499 265 99 ; Align 210664 298 111 ; Align 211774 335 156 ; Align 212034 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 296 Query range: 16 -> 263 Target range: 284523 -> 285285 17 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpPro<-><->V : 34 ||||||:!!|||:!!|||||||||||||||||||||||||||||||||||| : TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 35 : alLeuThrSerArgAsnGluLysIleValSerLeuThrLeuAsnValIleCysTyrCy : 53 !!! !..!!!!! ! ||||||||| !|||:!!..!||| :!!||| !!! !! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 54 : sSerIleLeuValThrValValProCysLeuLeuArgIlePheLeuGlu<->AspAsp : 71 ! !||| ! !! !:!!||||||||| !||| !!! ! ! |||!!: !! ! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 72 : AspLeuLeuAlaLysLeuLysMetThrGlyAlaMetSerHisCysPheAlaGlyGlyL : 91 |||||| !.!!|||:!!||||||! !||| !!:!!||| !|||.!. !!.!!.!: AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 92 : euAsnTyrThrThrLeuLeuLeuArgArgLysGluIleHisTyrCysIleLysGlnIl : 110 !!!!.||| !! !|||:!!! !||| !! :!!||| ! ! |||:!:|||.!.|| leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 111 : eAsnSerAspTrpArgThrVal<-><-><->LysArgProAspAlaGlnGlnValMet : 126 |..!:!!|||||| ! !..! !..::: ::: :::::::::||| eArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMet 284813 : TCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTG : 284869 127 : LeuLysAspAlaLysPheGlyArgSerValAlaAlaPheCysAlaIlePheMet<->G : 145 ! ! ..!|||!:!.!!|||||||||:!!||| !||||||||| !|||||| . ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrS 284870 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATT : 284929 146 : lnGlyGlyValPheCysPheSerValAlaThrValPheThrMetGluIleValGlnVa : 164 ..|||||| !!|||! ! !!!!||| ! !!:!!! !|||:!:...! ! ! :! erGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIl 284930 : CCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCAT : 284986 165 : lGlyAsnGluThrArgAlaValHisThrPheProCysProAlaTyrArgLysLeuIle : 183 !! !||||||||| ! ! !!!..!!||| ||| !|||||| |||:!! eAspAsnGluThrValArgSerGlnAlaPhe------ProIleTyrArgGlyLeuLeu 284987 : CGACAACGAGACCGTGAGATCTCAAGCGTTC------CCGATCTATCGCGGCCTTCTC : 285037 184 : ProValAspAsnAsnPheLeuCysGluIlePheLeuAlaValGlnPheLeuCysValP : 203 ! ! !!.!!:! ! !! !|||||| ! ! ! !:!!|||! !|||..!!.!| AspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaP 285038 : GATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGT : 285097 204 : heIleValAsnSerThrIleValGlyAlaPheSerLeuAlaIleValPheAlaSerHi : 222 ||:!!:!! !!|||..!! !|||||||||! !||||||||| !||||||!.!! !|| heValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHi 285098 : TCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCA : 285154 223 : sValTyrGlyGlnLeuAspIleLeuMetValTrpValThrGluTyrValAsn<-><-> : 240 ||||! !||||||!!! ||||||:!!..! !:!! !:!! !|||:!! sValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyVal 285155 : CGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTG : 285211 241 : LysSerGluGluMetHisLysAsnArgTrpAsnGlnIleGlyValPheValGluAsnH : 259 |||.!!..!:!! ! !..!..!.! .!.!:!:!:|||! !.!!:!!|||:!!| LysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisH 285212 : AAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATC : 285271 260 : isValLysIleLeu : 263 ||:!!||||||||| isLeuLysIleLeu 285272 : ATCTGAAGATACTG : 285285 vulgar: gi|383850520|ref|XP_003700843.1| 16 263 . KQ414889.1 284523 285285 + 296 M 17 51 G 0 6 M 36 108 G 0 3 M 48 144 G 0 9 M 27 81 G 0 3 M 30 90 G 2 0 M 63 189 G 0 6 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 285285 296 + . gene_id 13 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284524 285285 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 285285 . + . insertions 27 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 284524 285285 296 + . alignment_id 13 ; Query gi|383850520|ref|XP_003700843.1| ; Align 284524 17 51 ; Align 284581 34 108 ; Align 284692 70 144 ; Align 284845 118 81 ; Align 284929 145 90 ; Align 285019 177 189 ; Align 285214 240 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 286 Query range: 15 -> 269 Target range: 226927 -> 227695 16 : AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProVal< : 35 :!! |||:!!|||||||||||||||.!.|||||||||:!!|||:!!|||||| ! AsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerS 226928 : AACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGT : 226985 36 : -><->LeuThrSerArgAsnGluLysIleValSerLeuThrLeuAsnValIleCysTy : 52 !!:!||||||! ! !!:! ! !!|||! ! !:!!..! !!:!!||||| erArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTy 226986 : CGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTA : 227042 53 : rCysSerIleLeuValThrValValProCysLeuLeuArgIlePheLeuGluAspAsp : 71 |... !!!: ! !! !:!!||| !! !! !||| !:!: !!||||||! ! rAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLys 227043 : CGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAA : 227099 72 : AspLeuLeuAlaLysLeuLysMetThrGlyAlaMetSerHisCysPheAlaGlyGlyL : 91 ! ! !! ! !! !|||||||||! !||| !!|||||| !! ! !..! !| GlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuL 227100 : GGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCC : 227159 92 : euAsnTyrThrThrLeuLeuLeuArgArgLysGluIleHisTyrCysIleLysGlnIl : 110 ||!!.|||:!!! !||| !!!!!.!..! ! !!:|||! ! ! |||:!!:!!!:!|| euLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIl 227160 : TCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGAT : 227216 111 : eAsnSerAspTrpArgThrValLysArgProAspAlaGlnGlnValMetLeuLysAsp : 129 |!!.!!!||||||!:!!.!:!!!:! !! !!!:! !::!.!.||||||:!!! ! !! eLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyr 227217 : CAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTAC : 227273 130 : AlaLysPheGlyArgSerValAlaAlaPheCysAlaIlePheMetGlnGlyGlyValP : 149 ||| ! !:!||||||!.!:!! !.!!.!!|||.!!.!!|||:!: ...... AlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheV 227274 : GCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcg : 227333 150 : heCysPheSerValAlaThrValPheThrMetGluIleValGlnValGlyAsnGluTh : 168 ||| :!!!.!..! !.!!!.! ! !! !||| !..!! !:!!! !!. alPhePheTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGlyAs 227334 : tatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAA : 227390 169 : rArgAlaValHisThrPheProCysProAlaTyrArgLysLeuIleProValAspAsn : 187 !!.!::! ! ! !.!.|||! !||| ! !:!! :!! ! !||| ! !! nHisSerTyrIleGlnMetProPheProPheProLysIleIleAlaAspValArgTyr 227391 : CCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTAC : 227447 188 : AsnPheLeuCysGluIlePheLeuAlaValGlnPheLeuCysValPheIleValAsnS : 207 !:! !!!! !|||||||||!!!:!!|||||||||:!! ! !.!!:!::!!:!!. SerProPheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuHisG 227448 : AGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACG : 227507 208 : erThrIleValGlyAlaPheSerLeuAlaIleValPheAlaSerHisValTyrGlyGl : 226 !!..!! !!.!|||! !|||:!!||| !:!!.!!||| !|||!.!! !||||| lyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGl 227508 : GTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCA : 227564 227 : nLeuAspIleLeuMetValTrpValThrGluTyrValAsnLysSerGluGluMetHis : 245 |:!!!!::!:|||:!! !|||:!! !.!.! :!!:!! !!!! !!!:||| ! nMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGlyArgAlaAspMetSer 227565 : GATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGCAGAGCGGATATGAGC : 227621 246 : LysAsnArgTrpAsnGlnIleGlyValPheValGluAsnHisValLysIleLeuArgP : 265 |||!..! ! :!!::!|||!.! !.!!||| :!!||||||::!||||||!:!! LysThrLeuAspAspArgIleAlaSerIleValThrHisHisValArgIleLeuLysC 227622 : AAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACCACGTTCGAATATTGAAGT : 227681 266 : heIleAlaHisIle : 269 !:!!.!! !||| ysValThrCysIle 227682 : GTGTAACGTGTATC : 227695 vulgar: gi|383850520|ref|XP_003700843.1| 15 269 . KQ414889.1 226927 227695 + 286 M 19 57 G 0 6 M 235 705 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226928 227695 286 + . gene_id 14 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226928 227695 . + . KQ414889.1 exonerate:protein2genome:local exon 226928 227695 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226928 227695 286 + . alignment_id 14 ; Query gi|383850520|ref|XP_003700843.1| ; Align 226928 16 57 ; Align 226991 35 705 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 269 Query range: 297 -> 390 Target range: 244441 -> 244826 298 : GluTrpGluGluHisAspValGlnAsnLeuThrSerTyrAlaMetIleLeuValSerV : 317 ||||||! !||| !|||!.!:!!! !|||! !!!!||| !!!: !||||||:!!: GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheIleAlaLeuValAlaI 244442 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTATAGCACTCGTTGCTA : 244499 318 : alThrPheAsnValPheIleMetCysTyrIleGlyGluValLeuMetGluGln >>> : 335 !!..!! !|||..!||||||:!:|||||||||.!!!!: !|||! |||||| leValSerAsnThrPheIleLeuCysTyrIleSerAspArgLeuThrGluGln++ 244500 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGACAGGCTGACAGAACAGgt... : 244555 336 : > Target Intron 1 >>>> CysAsnArgValAlaAspValValTyrMetThrA : 346 106 bp ||| !:!|||!.!!!:|||||||||||||||: ++CysLeuLysValGlyGluValValTyrMetThrA 244556 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 244692 347 : snTrpTyrCysMetProTyrArgSerIleLeuAspLeuIleLeuIleIleSerArgSe : 365 !!||||||! !:!!||| ! |||!!!||||||||||||||||||||||||!.!||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSe 244693 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATC : 244749 366 : rAsnValValThrLysIleThrAlaGlyLysValIleTyrMetSerIleTyrThrPhe : 384 ||||:!!|||..!:!!||||||||||||||||||:!!:!!||||||:!!||||||||| rAsnMetValValGluIleThrAlaGlyLysValLeuHisMetSerLeuTyrThrPhe 244750 : GAACATGGTCGTTGAAATCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTC : 244806 385 : GlyAspValLeuLysThr : 390 ||||||||| !:!!||| GlyAspValSerGluThr 244807 : GGCGATGTAAGTGAAACT : 244826 vulgar: gi|383850520|ref|XP_003700843.1| 297 390 . KQ414889.1 244441 244826 + 269 M 37 111 5 0 2 I 0 102 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244442 244826 269 + . gene_id 15 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244442 244552 . + . KQ414889.1 exonerate:protein2genome:local exon 244442 244552 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244553 244554 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244553 244658 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244657 244658 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244659 244826 . + . KQ414889.1 exonerate:protein2genome:local exon 244659 244826 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244442 244826 269 + . alignment_id 15 ; Query gi|383850520|ref|XP_003700843.1| ; Align 244442 298 111 ; Align 244659 335 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 258 Query range: 176 -> 402 Target range: 300216 -> 302163 177 : ProAlaTyrArgLysLeuIleProValAspAsnAsnPheLeuCysGluIlePheLeuA : 196 |||!.!||| ! !!!!||| !..!.!.!.!!:! ! !! !|||||| ... ProGlyTyrAspTrpPheIleAspThrGlnThrSerProThrTyrGluIleValPheP 300217 : CCTGGCTACGATTGGTTTATCGATACACAAACCAGTCCTACCTACGAgatcgtatttt : 300274 197 : laValGlnPheLeuCysValPheIleValAsnSerThrIleValGlyAlaPheSerLe : 215 ... .!!...!.!.!.|||:!! !!!:!..!! !..!!.!|||!:!||||| hePheHisCysPheAlaAlaMetIleMetTyrAsnValThrThrAlaAlaTyrSerLe 300275 : tctttcactgttTCGCAGCGATGATCATGTACAACGTGACAACGGCAGCGTACAGTTT : 300331 216 : uAlaIleValPheAlaSerHisValTyrGlyGlnLeuAspIleLeuMetValTrpVal : 234 |||| :!!|||!.!!!!|||:!!! !||||||:!!.!.|||! !|||!.! ! :!! uAlaAlaIlePheValThrHisIleCysGlyGlnIleGlnIleGlnMetAlaArgLeu 300332 : GGCGGCGATATTCGTCACTCATATCTGTGGACAGATTCAGATACAGATGGCGAGATTG : 300388 235 : ThrGluTyrValAsnLysSerGluGluMetHisLysAsnArgTrpAsnGlnIleGlyV : 254 !!!: |||.!.!:!!!!! !|||! ! !! ! ..!! ! :!!! :!:! !| GluAspLeuValGluArgThrGlyGluLysAspAspGlyPro---AspProLeuValV 300389 : GAGGATCTGGTGGAGAGGACGGGAGAGAAGGACGACGGTCCT---GATCCTTTGGTCG : 300445 255 : alPheValGluAsnHisValLysIleLeu{Ar} >>>> Target Intron 1 >> : 264 ||.!!|||..!:!!|||||||||:!!|||{||} 1110 bp alIleValArgAspHisValLysValLeu{Ar}++ 300446 : TTATCGTTCGAGATCACGTGAAGGTTTTA{AG}gt....................... : 300479 265 : >> {g}PheIleAlaHisIleGluGlnValMetSerProIleCysLeuSerGluLeu : 281 {|} ! ..! !.!!... !! !! ! !! !:!!||| ++{g}AspProCysSerPheArg***ProThrPheHisLeuCysAlaValIleLys 300480 : ..ag{A}GACCCGTGTTCCTTCCGTTAGCCAACTTTTCATCTCTGCgctgtaattaaa : 301636 282 : CysGlnCysThrLeuSerMetCysThrLeuCysTyrTyrIleIleMetGluTrpGluG : 301 ::: ||||||!:! !||| ! ! !.!! !||||||:!!. PheGluSerThrLeuAsnAlaLysPheLeuArgValIle***Phe***GluTrpGlnA 301637 : tttgaatctACTTTAAATGCAAAGTTTTTACGAGTAATTTGATTTTAGGAATGGCAAA : 301696 302 : luHisAspValGlnAsnLeuThrSerTyrAlaMetIleLeuValSerValThrPheAs : 320 !. !|||..! !:!! !!!!!:! !! :!:|||..!||| !!|||||||| snSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAs 301697 : ATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAA : 301753 321 : nValPheIleMetCysTyrIleGlyGluValLeuMetGluGln >>>> Target I : 335 |:!!||||||.!.|||||||||||||||:!!||| |||||| 80 nIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301754 : TATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt............. : 301800 336 : ntron 2 >>>> CysAsnArgValAlaAspValValTyrMetThrAsnTrpTyrCy : 349 bp |||!:!!:!:!!!.!...!.! !||| !! !:!!|||||| ++CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAs 301801 : ............agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAA : 301920 350 : sMetProTyrArgSerIleLeuAspLeuIleLeuIleIleSerArgSerAsnValVal : 368 !:!:||| !:!!!! !! !||||||||||||:!!! ! !! !|||.!. ! ! nLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrPro 301921 : TTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCG : 301977 369 : ThrLysIleThrAlaGlyLysValIleTyrMetSerIleTyrThrPheGlyAsp >> : 387 !!|||:!!||||||||||||:!!||| !!:!:|||:!: !!||||||.!!..! ProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSer++ 301978 : CCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTgt.. : 302036 388 : >> Target Intron 3 >>>> ValLeuLysThrAlaPheThrTyrLeuAsnIle : 397 82 bp |||:!!||||||:!! ! ..!|||||||||:!! ++ValValLysThrSerValValTyrLeuAsnLeu 302037 : .......................agGTGGTGAAAACATCGGTGGTGTACTTGAATTTA : 302146 398 : LeuArgGlnThrThr : 402 |||||| !..!||| LeuArgThrValThr 302147 : CTGCGAACAGTTACA : 302163 vulgar: gi|383850520|ref|XP_003700843.1| 176 402 . KQ414889.1 300216 302163 + 258 M 72 216 G 1 0 M 14 42 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 70 210 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300217 302163 258 + . gene_id 16 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300217 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300217 300476 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302163 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302163 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300217 302163 258 + . alignment_id 16 ; Query gi|383850520|ref|XP_003700843.1| ; Align 300217 177 216 ; Align 300433 250 42 ; Align 301588 265 210 ; Align 301878 335 156 ; Align 302116 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 242 Query range: 16 -> 264 Target range: 289735 -> 290482 17 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProValLeu< : 36 |||!!!!!!:!!||| !!.!|||.!!|||||||||||||||:!!!::||| !!:!! TyrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrProPheValP 289736 : TACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCT : 289793 37 : -><-><->ThrSerArgAsnGluLysIleValSerLeuThrLeuAsnValIleCysTy : 52 .!!||||||..!|||::!! !.!|||:!! !|||! !:!!:!!|||! heSerArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLeuValCysCy 289794 : TTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTG : 289850 53 : rCysSerIleLeuValThrValValProCysLeuLeuArgIlePheLeuGluAspAsp : 71 !! ! !:!!! ! !!! !:!!||||||! ! !! !!.!:!!.!.!!!...|||:!! sSerIleLeuGlnPheIleIleValProPheSerHisHisValLeuPheSerAspAsn 289851 : CTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAAC : 289907 72 : AspLeuLeuAlaLysLeuLysMetThrGlyAlaMetSerHisCysPheAlaGlyGlyL : 91 |||:!! !.!! :!!|||! !||| !!:!!!!! !|||!!..!! ! !! AspMetAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuThrThrPheP 289908 : GACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCT : 289967 92 : euAsnTyrThrThrLeuLeuLeuArgArgLysGluIleHisTyrCysIleLysGlnIl : 110 !!!!.||| ! !!!! !:!!!:! !!..!! !||| ! !|||:!:|||!!.|| heLysTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysValLysHisIl 289968 : TCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACAT : 290024 111 : eAsnSerAspTrpArgThrValLysArgProAspAlaGlnGlnValMetLeuLysAsp : 129 |.!.!!!||||||!:!! !:!!::: ! !||| !!:: :!!||||||!:! !! eGluArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMetLeuArgTyr 290025 : CGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATAC : 290081 130 : AlaLysPheGlyArgSerValAlaAlaPheCysAlaIlePheMetGlnGlyGlyValP : 149 !.!! !.!..!!|||!:!:!! ! !.!.||||||||||||:!! ! !|||! !. ValThrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyL 290082 : GTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTC : 290141 150 : heCysPheSerValAlaThrValPheThrMetGluIleValGlnValGlyAsnGluTh : 168 !.! !!:!!:! ||||||.!. !!:!! !:!! !! !|||! !. euSerTyrAsn------ThrValIleProLeuPheSerLysLysSerValAsnGlyAs 290142 : TGTCTTATAAC------ACTGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGGTAA : 290192 169 : rArgAlaValHisThrPheProCysProAlaTyrArgLysLeuIleProValAspAsn : 187 ! !.!!:!!... !!.!. !!! !|||!.!|||..!:!!!!!.!! !|||.!.!!. nValThrIleArgProLeuThrTyrProGlyTyrGluGluPhePheAspValGlnLys 290193 : CGTGACTATCAGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAG : 290249 188 : AsnPheLeuCysGluIlePheLeuAlaValGlnPheLeuCysValPheIleValAsnS : 207 !:! !! !|||||| !!!!!..!:!!!!.! !:!!! !|||.!.|||..! ! SerProAlaTyrGluIleValPheCysMetHisCysValTyrValMetIleThrAlaA 290250 : AGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGA : 290309 208 : erThrIleValGlyAlaPheSerLeuAlaIleValPheAlaSerHisValTyrGlyGl : 226 :!! !! !:!!!.!|||!:!||||||.!!! :!!||||||!!!|||..!! !||||| snIleThrMetAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGl 290310 : ACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCA : 290366 227 : nLeuAspIleLeuMetValTrpValThrGluTyrValAsnLysSerGluGluMetHis : 245 |:!! ! |||! !! !..! !!:!! !!!: ..!!!.!:!.!! ! !:!!.!. nIleLysIleGlnThrThrArgLeuGluAspLeuThrLysArgGlyMetLeuLeuGlu 290367 : GATTAAGATACAAACGACGCGGCTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAG : 290423 246 : LysAsnArgTrpAsnGlnIleGlyValPheValGluAsnHisValLysIleLeuArg : 264 |||... ! ! :!!!:::!:!.!||| !!|||.....!||||||:!!||||||!:! LysGlyValSerAspArgLeuAlaValValValSerGlyHisValGluIleLeuLys 290424 : AAGGGAGTGAGTGATCGTTTGGCGGTTGTTGTGAGCGGTCACGTGGAGATCTTGAAG : 290482 vulgar: gi|383850520|ref|XP_003700843.1| 16 264 . KQ414889.1 289735 290482 + 242 M 19 57 G 0 9 M 117 351 G 2 0 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289736 290482 242 + . gene_id 17 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289736 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289736 290482 . + . insertions 9 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289736 290482 242 + . alignment_id 17 ; Query gi|383850520|ref|XP_003700843.1| ; Align 289736 17 57 ; Align 289802 36 351 ; Align 290153 155 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 239 Query range: 275 -> 402 Target range: 286812 -> 287338 276 : IleCysLeuSerGluLeuCysGlnCysThrLeuSerMetCysThrLeuCysTyrTyrI : 295 :!:|||! !! !.!. ! ..!...! !:!!:!!.!. !! !! !! ! ! : LeuCysTyrTyrHisThrValMetAlaIleIleAlaPheValMetTyrSerLeuSerV 286813 : TTGTGTTATTACCATACTGTAATGGCAATAATTGCATTCGTCATGTACTCGTTGTCAG : 286870 296 : leIleMetGluTrpGluGluHisAspValGlnAsnLeuThrSerTyrAlaMetIleLe : 314 !!.!! !|||||||||:!! !!!:..! !... !! !!!!|||..!! !:!:|| alPhe***GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLe 286871 : TTTTCTAGGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCT : 286927 315 : uValSerValThrPheAsnValPheIleMetCysTyrIleGlyGluValLeuMetGlu : 333 ||||||| !!||||||||||||||||||:!:|||||||||||||||:!!||| ||| uValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGlu 286928 : GGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAA : 286984 334 : Gln >>>> Target Intron 1 >>>> CysAsnArgValAlaAspValValTy : 343 ||| 74 bp ||| !:!|||!.! !..!|| Gln++ ++CysLeuLysValGlyLeuSerThrTy 286985 : Caggt.........................agtGCTTAAAAGTCGGCTTGTCAACTTA : 287088 344 : rMetThrAsnTrpTyrCysMetProTyrArgSerIleLeuAspLeuIleLeuIleIle : 362 ||||! !:!!|||||| !!:!!||| !:!!!! !! !! !||||||||||||.!! rMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePhe 287089 : CATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTC : 287145 363 : SerArgSerAsnValValThrLysIleThrAlaGlyLysValIleTyrMetSerIleT : 382 :!! !|||||| ! !! !|||:!!||||||||||||:!!||| !!:!:|||:!! AlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuS 287146 : GCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAA : 287205 383 : yrThrPheGlyAsp >>>> Target Intron 2 >>>> ValLeuLysThrAla : 391 !!:!||| !!..! 71 bp |||||||||:!!||| erSerPheCysSer++ ++ValLeuLysSerAla 287206 : GCAGCTTCTGCAGCgt.........................agGTGTTGAAATCGGCA : 287303 392 : PheThrTyrLeuAsnIleLeuArgGlnThrThr : 402 |||.!!||||||!:!:!!|||||| ! !||| PheAlaTyrLeuSerLeuLeuArgThrLeuThr 287304 : TTCGCATATCTGAGCTTATTACGTACGCTAACC : 287338 vulgar: gi|383850520|ref|XP_003700843.1| 275 402 . KQ414889.1 286812 287338 + 239 M 59 177 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286813 287338 239 + . gene_id 18 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286813 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286813 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287220 287221 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 287220 287290 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 287289 287290 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 287291 287338 . + . KQ414889.1 exonerate:protein2genome:local exon 287291 287338 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286813 287338 239 + . alignment_id 18 ; Query gi|383850520|ref|XP_003700843.1| ; Align 286813 276 177 ; Align 287064 335 156 ; Align 287291 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 215 Query range: 333 -> 390 Target range: 238625 -> 238796 334 : GlnCysAsnArgValAlaAspValValTyrMetThrAsnTrpTyrCysMetProTyrA : 353 |||||| !:!|||!.!!!:|||||||||||||||:!!||||||! !:!!||| ! | GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 354 : rgSerIleLeuAspLeuIleLeuIleIleSerArgSerAsnValValThrLysIleTh : 372 ||!!!||||||||||||||||||||||||!.!|||||||||||||||..!|||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 373 : rAlaGlyLysValIleTyrMetSerIleTyrThrPheGlyAspValLeuLysThr : 390 |||||||||||||:!!:!!||||||:!!|||||||||||||||||| !:!!||| rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThr 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 238796 vulgar: gi|383850520|ref|XP_003700843.1| 333 390 . KQ414889.1 238625 238796 + 215 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238796 215 + . gene_id 19 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238796 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238796 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238796 215 + . alignment_id 19 ; Query gi|383850520|ref|XP_003700843.1| ; Align 238626 334 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 210 Query range: 333 -> 390 Target range: 254271 -> 254442 334 : GlnCysAsnArgValAlaAspValValTyrMetThrAsnTrpTyrCysMetProTyrA : 353 |||||| !:!|||!.!!!:|||||||||||||||:!!||||||! !:!!||| ! | GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 354 : rgSerIleLeuAspLeuIleLeuIleIleSerArgSerAsnValValThrLysIleTh : 372 ||!!!||||||||||||||||||||||||!!!|||||||||||||||..!:!!||||| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 373 : rAlaGlyLysValIleTyrMetSerIleTyrThrPheGlyAspValLeuLysThr : 390 ||||||||||:::...:::||||||:!!|||||||||||||||||| !:!!||| rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThr 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 254442 vulgar: gi|383850520|ref|XP_003700843.1| 333 390 . KQ414889.1 254271 254442 + 210 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254442 210 + . gene_id 20 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254442 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254442 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254442 210 + . alignment_id 20 ; Query gi|383850520|ref|XP_003700843.1| ; Align 254272 334 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 290 -> 398 Target range: 305079 -> 305816 291 : LeuCysTyrTyrIleIleMetGluTrpGluGluHisAspValGlnAsnLeuThrSerT : 310 ||| |||::: ..!!!:||||||... !:!!..! !:!||||||!!!| LeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrThrT 305080 : TTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACAT : 305137 311 : yrAlaMetIleLeuValSerValThrPheAsnValPheIleMetCysTyrIleGlyGl : 329 ||.!!:!!:!!|||:!!|||||||||||||||:!!||||||:!:|||||||||||||| yrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGl 305138 : ATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGA : 305194 330 : uValLeuMetGluGlnCys{As} >>>> Target Intron 1 >>>> {n}Arg : 337 |:!!|||||||||:!! {!:} 413 bp {!}!!! uIleLeuMetGluLysVal{Se}-+ ++{r}Ser 305195 : GATTCTTATGGAAAAGGTG{ag}tt.........................ag{T}AGC : 305631 338 : ValAlaAspValValTyrMetThrAsnTrpTyrCysMetProTyrArgSerIleLeuA : 357 |||!.! ! !!:!|||! !!:!|||||| !:!:||| !!:!!!!|||! !! ValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisG 305632 : GTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATG : 305691 358 : spLeuIleLeuIleIleSerArgSerAsnValValThrLysIleThrAlaGlyLysVa : 376 !|||||||||||||||:!!! !|||!:! ! !.!!||||||!:!||||||||||| lyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysVa 305692 : GTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGT : 305748 377 : lIleTyrMetSerIleTyrThrPheGlyAspValLeuLysThrAlaPheThrTyrLeu : 395 |:!! !!:!:|||:!!! !|||||||||:!!||| ! ! ! :::::: ::: lValAspLeuSerLeuSerThrPheGlyAsnValSerTyrTyrGlnTyrSerAsnIle 305749 : AGTTGATTTATCTTTATCCACATTTGGAAACGTGAGTTACTATcaatattccaatatt : 305805 396 : AsnIleLeu : 398 :::|||::: SerIleVal 305806 : tcaattgtt : 305816 vulgar: gi|383850520|ref|XP_003700843.1| 290 398 . KQ414889.1 305079 305816 + 205 M 45 135 S 0 2 5 0 2 I 0 409 3 0 2 S 1 1 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305080 305816 205 + . gene_id 21 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305080 305216 . + . KQ414889.1 exonerate:protein2genome:local exon 305080 305216 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305217 305218 . + . intron_id 1 ; splice_site "tt" KQ414889.1 exonerate:protein2genome:local intron 305217 305629 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305628 305629 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305630 305816 . + . KQ414889.1 exonerate:protein2genome:local exon 305630 305816 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305080 305816 205 + . alignment_id 21 ; Query gi|383850520|ref|XP_003700843.1| ; Align 305080 291 135 ; Align 305631 337 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 203 Query range: 333 -> 392 Target range: 273014 -> 273191 334 : GlnCysAsnArgValAlaAspValValTyrMetThrAsnTrpTyrCysMetProTyrA : 353 ||||||...::::::...!!:||||||||||||||||||||||||! !:!:||| !! GlnCysLysLysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProGlyL 273015 : cagtgtaaaaaaattggcGAGGTAGTTTACATGACGAACTGGTACTATTTACCCGGCA : 273072 354 : rgSerIleLeuAspLeuIleLeuIleIleSerArgSerAsnValValThrLysIleTh : 372 :!..!||||||||||||||||||||||||||||||!!!!:!||||||! !|||||||| ysAspIleLeuAspLeuIleLeuIleIleSerArgCysSerValValIleLysIleTh 273073 : AAGATATCCTCGATCTGATTTTGATCATCTCAAGATGCAGTGTTGTGATTAAAATCAC : 273129 373 : rAlaGlyLysValIleTyrMetSerIleTyrThrPheGlyAspValLeuLysThrAla : 391 |||||||!:!:!!:!! !||||||:!:||||||||||||||||||! ... rAlaGlyArgIleValProMetSerValTyrThrPheGlyAspValArgSerGlnLeu 273130 : CGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTCGGCGATGTACgttctcaatta : 273186 392 : Phe : 392 ||| Phe 273187 : ttt : 273191 vulgar: gi|383850520|ref|XP_003700843.1| 333 392 . KQ414889.1 273014 273191 + 203 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 273015 273191 203 + . gene_id 22 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 273015 273191 . + . KQ414889.1 exonerate:protein2genome:local exon 273015 273191 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 273015 273191 203 + . alignment_id 22 ; Query gi|383850520|ref|XP_003700843.1| ; Align 273015 334 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 197 Query range: 297 -> 400 Target range: 206050 -> 207601 298 : GluTrpGluGluHisAspValGlnAsnLeuThrSerTyrAlaMetIleLeuValSerV : 317 |||||||||.!.:!!:!!..! ! :!!! ! !||| !! !:!:! !:!!||| GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 318 : alThrPheAsnValPheIleMetCysTyrIleGlyGluValLeuMetGluGln >>> : 335 !|||||| !|||||||||:!:||||||||||||:!!:!!|||!!:!!:||| ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 336 : > Target Intron 1 >>>> CysAsnArgValAlaAspValValTyrMetThrA : 346 81 bp !:!! !|||!.! ..! !! !! !..!| ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 347 : snTrpTyrCysMetProTyrArgSerIleLeuAspLeuIleLeuIleIleSerArgSe : 365 |||||||| !!:!:||| !!||| ! ! !..!:!!||||||||||||:!!! !|| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 366 : rAsnValValThrLysIleThrAlaGlyLysValIleTyrMetSerIleTyrThrPhe : 384 |||| ! !! !|||:!!||||||||||||:!!.!! ! ||||||:!! !!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 385 : GlyAsp >>>> Target Intron 2 >>>> ValLeuLysThrAlaPheThrTy : 394 !||| 1161 bp |||:!!|||..!|||.!. !|| ThrAsp++ ++ValMetLysValAlaMetGlyTy 206391 : ACCGATgt.........................agGTAATGAAGGTGGCGATGGGATA : 207581 395 : rLeuAsnIleLeuArgGln : 400 |!!!||||||||||||:!! rPheAsnIleLeuArgGlu 207582 : CTTCAACATACTCCGTGAA : 207601 vulgar: gi|383850520|ref|XP_003700843.1| 297 400 . KQ414889.1 206050 207601 + 197 M 37 111 5 0 2 I 0 77 3 0 2 M 52 156 5 0 2 I 0 1157 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 207601 197 + . gene_id 23 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206398 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206398 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206399 206400 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206399 207559 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 207558 207559 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 207560 207601 . + . KQ414889.1 exonerate:protein2genome:local exon 207560 207601 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 207601 197 + . alignment_id 23 ; Query gi|383850520|ref|XP_003700843.1| ; Align 206051 298 111 ; Align 206243 335 156 ; Align 207560 387 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 17 -> 208 Target range: 294690 -> 295269 18 : SerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProValLeu<->< : 36 ||||||:!!! ! !||| !!.!.|||||||||||||||:!!||||||:!!:!! SerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrS 294691 : AGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACA : 294748 37 : -><->ThrSerArgAsnGluLysIleValSerLeuThrLeuAsnValIleCysTyrCy : 53 ||||||!:! .!.|||:!!:!!|||:!!! !|||! !!.! ||| ! erHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLe 294749 : GTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTT : 294805 54 : sSerIleLeuValThrValValProCysLeuLeuArgIlePheLeuGluAspAspAsp : 72 !!!:!!||| !!..!:!!||||||||| !! ! ! ! ! !!!.!.! ::: uThrValLeuPheValLeuValProCysGlyTyrPheCysValPheHisValLysAsn 294806 : GACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaac : 294862 73 : LeuLeuAlaLysLeuLysMetThrGlyAlaMetSerHisCysPheAlaGlyGlyLeuA : 92 ::: |||:!!|||:!: !||| !!:!: !:!!! !.!. !..! !|||! ValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuA 294863 : gtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCA : 294922 93 : snTyrThrThrLeuLeuLeuArgArgLysGluIleHisTyrCysIleLysGlnIleAs : 111 ..|||!:! !|||:!!|||!:!! ! ! !.!! ! :!!||||||:!!.!.|||.! rgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCysIleGluAspIleGl 294923 : GGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGA : 294979 112 : nSerAspTrpArgThrValLysArgProAspAlaGlnGlnValMetLeuLysAspAla : 130 .!:!||||||!:! !:!! ! !.!|||!!: !!:! !:!!|||:!!|||:!!||| uAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIleMetIleLysAsnAla 294980 : GAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCG : 295036 131 : LysPheGlyArgSerValAlaAlaPheCysAlaIlePheMetGlnGlyGlyValPheC : 150 ! ! !! !!:!!!!:!!.!!!.! !! !.!!|||.!.!!: ! .!!..!!.! ! ! MetValThrGlnArgMetThrValAlaPheThrIleIleIleTyrSerSerAlaValS 295037 : ATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGT : 295096 151 : ysPheSerValAlaThrValPheThrMetGluIleValGlnValGlyAsnGluThrAr : 169 !:! !!.! !... ||| ... :!!:!! ..!!!.:!!!.!!. erTyrHisAlaIleValProPhePheSerAsnAlaLeuGlu---AsnLysLysAsnAs 295097 : CGTATCACGCCATTGtgccatttttttcaaacgctTTGGAG---AACAAGAAGAATAA : 295150 170 : gAlaValHisThrPheProCysProAlaTyrArgLysLeuIleProValAspAsnAsn : 188 !.!!:!!!.!.!!!!.||| !|||!.!|||..! !!!!:!! !!.! !!::!!:! nThrIleArgAlaLeuProIleProGlyTyrGluLeuPheValAspAlaTyrSerSer 295151 : TACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGT : 295207 189 : PheLeuCysGluIlePheLeuAlaValGlnPheLeuCysValPheIleValAsnSerT : 208 ! !! !||||||.!. !.!! !! |||:!!! ! !|||.!!||||||!.!| ProThrTyrGluIleIleArgThrHisLeuPheValTyrSerPhePheValAsnLysT 295208 : CCTACCTACGAGATCATAAGAACTCATCTCTTTGTTTACTCGTTCTTCGTCAACAAAA : 295267 209 : hr : 208 || hr 295268 : CT : 295269 vulgar: gi|383850520|ref|XP_003700843.1| 17 208 . KQ414889.1 294690 295269 + 183 M 18 54 G 0 9 M 128 384 G 1 0 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294691 295269 183 + . gene_id 24 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294691 295269 . + . KQ414889.1 exonerate:protein2genome:local exon 294691 295269 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294691 295269 183 + . alignment_id 24 ; Query gi|383850520|ref|XP_003700843.1| ; Align 294691 18 54 ; Align 294754 36 384 ; Align 295138 165 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 176 Query range: 14 -> 229 Target range: 194165 -> 194807 15 : SerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProV : 34 !!!!!:|||:!!:!!!:!:!! !:! !.!!|||! !|||||||||:!!|||||| ThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProA 194166 : ACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAA : 194223 35 : alLeuThrSerArgAsnGluLysIleValSerLeuThrLeuAsnValIleCysTyrCy : 53 ! ! !|||! !..!!!:!:!:!! ! !!!!.!!! !!.!! !:!: !!:!.. rgGluAspSerLeuArgAspArgValArgLeuPheAlaGlnThrGlyValValPheAl 194224 : GGGAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTTCGC : 194280 54 : sSerIleLeuValThrValValProCysLeuLeuArgIlePheLeuGluAspAspAsp : 72 !! !!!:! ! !! !:!!|||||| !:!!:!! !! !!:!!!!!!: !!!:||| aLeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCysGluAsp 194281 : TTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAGGAT : 194337 73 : LeuLeuAlaLysLeuLysMetThrGlyAlaMetSerHisCysPheAlaGlyGlyLeuA : 92 ||| ! ! ! :!!|||:!:! !!.!|||... ! ! !!.!. !!.! !:!!! LeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleIleL 194338 : CTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCATCA : 194397 93 : snTyrThrThrLeuLeuLeuArgArgLysGluIleHisTyrCysIleLysGlnIleAs : 111 !.!:! !|||:!!:!!:!!!.!||||||||||||...!:!|||:!: !:!!!!:.! ysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGluMetGl 194398 : AGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGATGGA : 194454 112 : nSerAspTrpArgThrValLysArgProAspAlaGlnGlnValMetLeuLysAspAla : 130 .!!!.!.!::||| !|||:!! !! !!!:! !!:!||||||||| !!!. !||| uThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsnCysAla 194455 : GACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGCGCG : 194511 131 : LysPheGlyArgSerValAlaAlaPheCysAlaIlePheMetGlnGlyGlyValPheC : 150 |||.!!||||||! ! !!.!!.!!.!.! ! ! !.!! ! ||||||!.!!!. LysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaLeuP 194512 : AAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTTTGC : 194571 151 : ysPheSerValAlaThrValPheThrMetGluIleValGlnValGlyAsnGluThrAr : 169 !:! !:!! ! ! !.!.! ! !|||! :!! ||| !.!.!!:!.!!! roTyrHisIleIleLeuProLeuMetSerGluArgIle---ValLysGluAspAsnSe 194572 : CGTACCACATTATTCTACCTCTGATGTCGGAGAGGATT---GTCAAGGAGGATAACAG : 194625 170 : gAlaValHisThrPheProCysProAlaTyrArgLysLeuIleProValAspAsnAsn : 188 !.!! ! !!.!.|||! ! !::! !! ! !!!.!! !!:!!!!::!!::: rThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAspSer 194626 : TACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGACTCG : 194682 189 : PheLeuCysGluIlePheLeuAlaValGlnPheLeuCysValPheIleValAsnSerT : 208 :!!! !|||||| !!!!.! !|||.!.||| ! ! !|||:!! |||| ProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuSerT 194683 : CCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGTCGA : 194742 209 : hrIleValGlyAlaPheSerLeuAlaIleValPheAlaSerHisValTyrGlyGlnLe : 227 ||! ! !||| !!:!||||||!.! !..!.!! !! !||| !! !||| !!! hrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGlyLeuPh 194743 : CGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTTGTT : 194799 228 : uAspIle : 229 !!!::!: eGluVal 194800 : CGAAGTG : 194807 vulgar: gi|383850520|ref|XP_003700843.1| 14 229 . KQ414889.1 194165 194807 + 176 M 148 444 G 1 0 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194166 194807 176 + . gene_id 25 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194166 194807 . + . KQ414889.1 exonerate:protein2genome:local exon 194166 194807 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 194166 194807 176 + . alignment_id 25 ; Query gi|383850520|ref|XP_003700843.1| ; Align 194166 15 444 ; Align 194610 164 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 16 -> 117 Target range: 303196 -> 303499 17 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProValLeuT : 36 ||| ! !:!!! !!:!!:!|||.!!|||||| !!:!!|||:!!||||||!.!:!! TyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTrpProAlaValL 303197 : TACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTGGCCAGCCGTGT : 303254 37 : hrSerArgAsnGluLysIleValSerLeuThrLeuAsnValIleCysTyrCysSerIl : 55 !..!..!!.!! ! !.!!:!! !! !! ! !! !! !:!! !! !!! !:! euAspGluThrAlaGlyPheLeuProLysIleThrIleGlyLeuSerAsnLeuValLe 303255 : TGGACGAAACCGCAGGATTCCTACCAAAAATCACCATTGGACTCAGTAATTTGGTTCT : 303311 56 : eLeuValThrValValProCysLeuLeuArgIlePheLeuGluAspAspAspLeuLeu : 74 !||| !!||||||:!!||||||:!!|||!.!|||.!.!!!|||.!. ! ||| !:!! uLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnLysAspThrIle 303312 : ATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAAAGGATACGATA : 303368 75 : AlaLysLeuLysMetThrGlyAlaMetSerHisCysPheAlaGlyGlyLeuAsnTyrT : 94 !!:!||||||:!: !||| !:!!||| !|||!!. !..! !:!!!!.||| IleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLeuMetLysTyrT 303369 : ATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTTGATGAAGTATT : 303428 95 : hrThrLeuLeuLeuArgArgLysGluIleHisTyrCysIleLysGlnIleAsnSerAs : 113 !.!!||| ! !|||!:! !..!||| ! ! ||||||:!!:!!:!:.!.||||| rpAlaLeuAlaThrArgLysProArgIleLysGluCysIleGluGluValGlnSerAs 303429 : GGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAGGTGCAAAGTGA : 303485 114 : pTrpArgThrVal : 117 ||||!:! !||| pTrpLysGluVal 303486 : TTGGAAAGAGGTG : 303499 vulgar: gi|383850520|ref|XP_003700843.1| 16 117 . KQ414889.1 303196 303499 + 175 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303197 303499 175 + . gene_id 26 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 303197 303499 . + . KQ414889.1 exonerate:protein2genome:local exon 303197 303499 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303197 303499 175 + . alignment_id 26 ; Query gi|383850520|ref|XP_003700843.1| ; Align 303197 17 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 331 -> 393 Target range: 283270 -> 283456 332 : MetGluGlnCysAsnArgValAlaAspValValTyrMetThrAsnTrpTyrCysMetP : 351 .!...!||||||!!.!:!|||!.!!!:||||||||||||||||||! !!:!! !:!:| PheArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuP 283271 : TTCCGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTAC : 283328 352 : roTyrArgSerIleLeuAspLeuIleLeuIleIleSerArgSerAsnValValThrLy : 370 || !!!:!..!||||||:!!|||:!!||||||||||||||||||!:!:::||| || roAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLy 283329 : CCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaa : 283385 371 : sIleThrAlaGlyLysValIleTyrMetSerIleTyrThrPheGlyAspValLeuLys : 389 ||||||||||...|||:::||| |||||| |||||||||! !||||||! !..! sIleThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspValArgSer 283386 : aattaccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTACGTTCA : 283442 390 : ThrAlaPheThr : 393 ! !|||||| LeuLeuPheThr 283443 : CTTCTTTTTACA : 283456 vulgar: gi|383850520|ref|XP_003700843.1| 331 393 . KQ414889.1 283270 283456 + 172 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283271 283456 172 + . gene_id 27 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283271 283456 . + . KQ414889.1 exonerate:protein2genome:local exon 283271 283456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283271 283456 172 + . alignment_id 27 ; Query gi|383850520|ref|XP_003700843.1| ; Align 283271 332 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 290 -> 387 Target range: 297439 -> 297803 291 : LeuCysTyrTyrIleIleMetGluTrpGluGluHisAspValGlnAsnLeuThrSerT : 310 ||| |||:::......... !|||:!! ||||||:!! ! !..!!!! LeuLysTyrHisPhePheGlnGlyTrpLysThrHisAspMetIlePheGlyValThrI 297440 : ttaaaatatcatttttttcaggGATGGAAAACTCACGATATGATTTTTGGGGTAACGA : 297497 311 : yrAlaMetIleLeuValSerValThrPheAsnValPheIleMetCysTyrIleGlyGl : 329 !!.! .!!:!!:!!|||:!!|||||||||:!!|||:!!:!:|||:!! !||||| leGlyGlyPheMetLeuSerIleThrPheAsnIlePheValLeuCysHisAlaGlyGl 297498 : TCGGCGGTTTCATGCTTTCGATCACTTTTAATATATTCGTATTATGTCATGCAGGTGA : 297554 330 : uValLeuMetGluGln >>>> Target Intron 1 >>>> CysAsnArgValA : 339 |:!!|||:!:|||:!! 73 bp ..!.!.!:! !!! uLeuLeuValGluGlu++ ++AlaGluLysPheG 297555 : ACTTCTTGTCGAGGAGgt.........................agGCTGAAAAATTCG : 297657 340 : laAspValValTyrMetThrAsnTrpTyrCysMetProTyrArgSerIleLeuAspLe : 358 .!:!!!.!!.!|||! ! !.!.|||||| !:!:||| !.!!!! !|||||||| lyAsnAlaAlaTyrAsnIleGluTrpTyrAsnLeuProProAsnArgAlaLeuAspLe 297658 : GCAATGCAGCTTATAACATCGAATGGTACAACTTACCGCCAAACAGGGCTCTCGATCT : 297714 359 : uIleLeuIleIleSerArgSerAsnValValThrLysIleThrAlaGlyLysValIle : 377 |:!:|||!!:|||.!!! !:!!!!. !! ! !!!:!:!!|||...||||||:::... uValLeuMetIleGlyIleAlaLysPheProProArgLeuThrGlyGlyLysIlePhe 297715 : GGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCACAggtggaaaaatattc : 297771 378 : TyrMetSerIleTyrThrPheGlyAspVal : 387 :::|||||| !!||||||.!!! !||| AspIleSerIleAsnThrPheSerAlaVal 297772 : gatatatCGATAAACACGTTCAGTGCCGTA : 297803 vulgar: gi|383850520|ref|XP_003700843.1| 290 387 . KQ414889.1 297439 297803 + 164 M 44 132 5 0 2 I 0 69 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297440 297803 164 + . gene_id 28 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 297440 297571 . + . KQ414889.1 exonerate:protein2genome:local exon 297440 297571 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 297572 297573 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 297572 297644 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 297643 297644 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 297645 297803 . + . KQ414889.1 exonerate:protein2genome:local exon 297645 297803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297440 297803 164 + . alignment_id 28 ; Query gi|383850520|ref|XP_003700843.1| ; Align 297440 291 132 ; Align 297645 335 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 297 -> 396 Target range: 291368 -> 292578 298 : GluTrpGluGluHisAspValGlnAsnLeuThrSerTyrAlaMetIleLeuValSerV : 317 |||||||||... !||| ! ...:!! !!!!|||!.!! :!!|||..!||| GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 318 : alThrPheAsnValPheIleMetCysTyrIleGlyGluValLeuMetGluGlnCysAs : 336 !!|||||||||:!!.!.|||.!.||||||:!!||||||:!!|||:!:! !||| !: heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGlnValSe 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAGGTAAG : 291483 337 : nArg{V} >>>> Target Intron 1 >>>> {al}AlaAspValValTyrMet : 344 !! !{|} 913 bp {||}||| !!!.! !||| rThr{V}++ +-{al}AlaHisAlaSerTyrAsp 291484 : TACT{G}gt.........................aa{TC}GCGCACGCTTCCTACGAT : 292420 345 : ThrAsnTrpTyrCysMetProTyrArgSerIleLeuAspLeuIleLeuIleIleSerA : 364 |||.!.|||||| !:!!||| |||!.! !! !|||:!!:!!|||:!::!!:!!! ThrGluTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaI 292421 : ACAGAATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCA : 292480 365 : rgSerAsnValValThrLysIleThrAlaGlyLysValIleTyrMetSerIleTyrTh : 383 !!!!!!. ! !! !|||:!!||||||||||||:!!.!! !:!:|||:!: !!|| leThrLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnTh 292481 : TAACGAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACAC : 292537 384 : rPheGlyAspValLeuLysThrAlaPheThrTyrLeuAsn : 396 |||||||! !|||! !:!!:!! !.!...!! :!!:!! rPheGlyAlaValArgGluSerLysLeuValLeuIleHis 292538 : TTTTGGCGCTGTACGTGAATCAAAACTAGTCTTGATACAC : 292578 vulgar: gi|383850520|ref|XP_003700843.1| 297 396 . KQ414889.1 291368 292578 + 162 M 40 120 S 0 1 5 0 2 I 0 909 3 0 2 S 1 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 292578 162 + . gene_id 29 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291369 291489 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291489 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291490 291491 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291490 292402 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 292401 292402 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 292403 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292403 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 292578 162 + . alignment_id 29 ; Query gi|383850520|ref|XP_003700843.1| ; Align 291369 298 120 ; Align 292405 339 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 297 -> 334 Target range: 272836 -> 272947 298 : GluTrpGluGluHisAspValGlnAsnLeuThrSerTyrAlaMetIleLeuValSerV : 317 |||||| !!:|||||| !!|||!:!||||||!!!||| !|||||||||:!!|||: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 318 : alThrPheAsnValPheIleMetCysTyrIleGlyGluValLeuMetGluGln : 334 !:|||||||||:::||||||:::|||||||||||||||:!!|||! !|||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGG : 272947 vulgar: gi|383850520|ref|XP_003700843.1| 297 334 . KQ414889.1 272836 272947 + 146 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 272947 146 + . gene_id 30 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 272947 146 + . alignment_id 30 ; Query gi|383850520|ref|XP_003700843.1| ; Align 272837 298 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 16 -> 113 Target range: 299689 -> 299989 17 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProValLeuT : 36 |||!!!||||||:!! !!:!|||!!.|||||||||||||||||||||! !:!!||| TyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpArgLeuLeuA 299690 : TACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGCGATTGCTAG : 299747 37 : hrSerArgAsnGluLys<-><-><->IleValSerLeuThrLeuAsnValIleCysTy : 52 !..!|||::!...||| :!!||||||:!!..!|||! ..!||||||!: spGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMetThrIleCysPh 299748 : ATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATGACAATATGCTT : 299804 53 : rCysSerIleLeuValThrValValProCysLeuLeuArgIlePheLeuGluAspAsp : 71 !! !|||:!:!!! !!! !|||:!!|||! ! !! ! !||||||!!!! !!!: ! eSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePhePheAlaGluLys 299805 : CTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCTTCGCGGAGAAA : 299861 72 : AspLeuLeuAlaLysLeuLysMetThrGlyAlaMetSerHisCysPheAlaGlyGlyL : 91 ..!:!!! !!.!|||:!!|||:!: !||| !!:!:.!! !|||.!!:!!..! !: SerIleHisValLysValLysValPheGlyProValGlyPheCysLeuSerSerIleV 299862 : AGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCATCG : 299921 92 : euAsnTyrThrThrLeuLeuLeuArgArgLysGluIleHisTyrCysIleLysGlnIl : 110 !!!!.||| ! !|||! !|||!.! !! ! !.!!.!. ||||||:!!!!.:! alLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCysIleGlnHisVa 299922 : TCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGCATCCAACACGT : 299978 111 : eAsnSerAsp : 113 !.!.!!!||| lGluArgAsp 299979 : CGAGAGAGAC : 299989 vulgar: gi|383850520|ref|XP_003700843.1| 16 113 . KQ414889.1 299689 299989 + 140 M 25 75 G 0 9 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299690 299989 140 + . gene_id 31 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299690 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299690 299989 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299690 299989 140 + . alignment_id 31 ; Query gi|383850520|ref|XP_003700843.1| ; Align 299690 17 75 ; Align 299774 42 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 333 -> 364 Target range: 261922 -> 262015 334 : GlnCysAsnArgValAlaAspValValTyrMetThrAsnTrpTyrCysMetProTyrA : 353 ||||||:::!:!|||!.!|||||||||||||||||||||||||||! !:!:||| !!! GlnCysSerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuProAspL 261923 : CAGTGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACCTGATA : 261980 354 : rgSerIleLeuAspLeuIleLeuIleIleSerArg : 364 :!|||||||||||||||||||||||||||:!!||| ysSerIleLeuAspLeuIleLeuIleIleAlaArg 261981 : AAAGTATCCTTGATTTGATTTTGATCATTGCACGA : 262015 vulgar: gi|383850520|ref|XP_003700843.1| 333 364 . KQ414889.1 261922 262015 + 126 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261923 262015 126 + . gene_id 32 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 261923 262015 . + . KQ414889.1 exonerate:protein2genome:local exon 261923 262015 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 261923 262015 126 + . alignment_id 32 ; Query gi|383850520|ref|XP_003700843.1| ; Align 261923 334 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 297 -> 334 Target range: 219328 -> 219439 298 : GluTrpGluGluHisAspValGlnAsnLeuThrSerTyrAlaMetIleLeuValSerV : 317 ||||||:!!..!:!!|||||| !!:! !..!!!!||| !!!::!!|||:!!|||: GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 318 : alThrPheAsnValPheIleMetCysTyrIleGlyGluValLeuMetGluGln : 334 !:|||||||||:::||||||...|||||||||||||||:!!:!! |||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: gi|383850520|ref|XP_003700843.1| 297 334 . KQ414889.1 219328 219439 + 123 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219439 123 + . gene_id 33 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219439 123 + . alignment_id 33 ; Query gi|383850520|ref|XP_003700843.1| ; Align 219329 298 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 333 -> 396 Target range: 230244 -> 230433 334 : GlnCysAsnArgValAlaAspValValTyrMetThrAsnTrpTyrCysMetProTyrA : 353 ||||||!..!:!|||!.!!!: ! !||||||! !.!.|||||| ! :!: !! ! GlnCysArgLysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyA 230245 : CAGTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAA : 230302 354 : rgSerIleLeuAspLeuIleLeuIleIleSerArgSerAsnValValThrLysIleTh : 372 .!!.!! ||| !! !||||||||||||:!!! !|||||| ! !||||||.!!|| snLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheTh 230303 : ACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTAC : 230359 373 : rAlaGlyLysValIleTyrMetSerIleTyrThrPheGlyAspValLeuLysThrAla : 391 |||||||!!.:!!:!! ! :!:|||:!! !!||||||.!!|||||| !! ! ! ! rAlaGlyAsnMetValGluLeuSerValAsnThrPheSerAspValSerIleIlePhe 230360 : AGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGACGTAAGTATCATATTC : 230416 392 : PheThrTyrLeuAsn : 396 ! !..!||| !||| SerValTyrThrAsn 230417 : TCTGTTTACACGAAT : 230433 vulgar: gi|383850520|ref|XP_003700843.1| 333 396 . KQ414889.1 230244 230433 + 119 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230245 230433 119 + . gene_id 34 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230245 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230245 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230245 230433 119 + . alignment_id 34 ; Query gi|383850520|ref|XP_003700843.1| ; Align 230245 334 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 297 -> 334 Target range: 283096 -> 283207 298 : GluTrpGluGluHisAspValGlnAsnLeuThrSerTyrAlaMetIleLeuValSerV : 317 ||||||...!!: !|||||||||!.!:!!|||!!!:!! !|||||||||:!!|||: GluTrpSerAspGlyAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 283097 : GAATGGTCTGACGGCGATGTTCAGACTATGACTACGCATTTCATGATCCTTATATCCA : 283154 318 : alThrPheAsnValPheIleMetCysTyrIleGlyGluValLeuMetGluGln : 334 !: ||||||:::||| !:!:! !|||||||||:!!:!!|||! |||||| etCysPheAsnIlePheThrValTyrTyrIleGlyLysIleLeuThrGluGln 283155 : TgtgtttcaacatttttacAGTATACTATATCGGGAAAATACTAACTGAACAG : 283207 vulgar: gi|383850520|ref|XP_003700843.1| 297 334 . KQ414889.1 283096 283207 + 112 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283097 283207 112 + . gene_id 35 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283097 283207 . + . KQ414889.1 exonerate:protein2genome:local exon 283097 283207 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283097 283207 112 + . alignment_id 35 ; Query gi|383850520|ref|XP_003700843.1| ; Align 283097 298 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 292 -> 334 Target range: 214614 -> 214740 293 : TyrTyrIleIleMetGluTrpGluGluHisAspValGlnAsnLeuThrSerTyrAlaM : 312 ::: |||::: ||||||.!...!:!!:!!:!! !!.! !..!!!!|||!.!: PheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValV 214615 : tttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGG : 214672 313 : etIleLeuValSerValThrPheAsnValPheIleMetCysTyrIleGlyGluValLe : 331 !!:!:! !:!!|||:::|||||||||:::||||||...|||||||||||||||:!!:! alLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuVa 214673 : TGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGGCGAGCTTGT : 214729 332 : uMetGluGln : 334 ! |||||| lSerGluGln 214730 : GTCTGAACAG : 214740 vulgar: gi|383850520|ref|XP_003700843.1| 292 334 . KQ414889.1 214614 214740 + 111 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214615 214740 111 + . gene_id 36 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214615 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214615 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214615 214740 111 + . alignment_id 36 ; Query gi|383850520|ref|XP_003700843.1| ; Align 214615 293 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 295 -> 345 Target range: 224317 -> 224467 296 : IleMetGluTrpGluGluHisAspValGlnAsnLeuThrSerTyrAlaMetIleLeuV : 315 .!!...||||||...... !!:!! !:! !..!!!!||| !!!::!!|||: PheGlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuM 224318 : TTTCaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCA : 224375 316 : alSerValThrPheAsnValPheIleMetCysTyrIleGlyGluValLeuMetGluGl : 334 !!|||:::|||||||||:::||||||...|||||||||||||||:!!:!! ||||| etSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl 224376 : TGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAca : 224432 335 : nCysAsnArgValAlaAspValValTyrMetThr : 345 | ...... ::: ::: ||| nValLysAsnPheLeuLysLeuPhePheThrThr 224433 : ggtgaaaaattttttaaaattattcttcacCACT : 224467 vulgar: gi|383850520|ref|XP_003700843.1| 295 345 . KQ414889.1 224317 224467 + 108 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224318 224467 108 + . gene_id 37 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224318 224467 . + . KQ414889.1 exonerate:protein2genome:local exon 224318 224467 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224318 224467 108 + . alignment_id 37 ; Query gi|383850520|ref|XP_003700843.1| ; Align 224318 296 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 181 -> 246 Target range: 202712 -> 202907 182 : LeuIleProValAspAsnAsnPheLeuCysGluIlePheLeuAlaValGlnPheLeuC : 201 :!!||| !||| !!!:! !:!! !|||||||||!!!:!!:!!!:!.!!:!!. IleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleValA 202713 : ATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAG : 202770 202 : ysValPheIleValAsnSerThrIleValGlyAlaPheSerLeuAlaIleValPheAl : 220 .!|||.!!:!!:!!:!!.!!..!! !|||||||||! !!!!|||.!! :!!||||| laValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAl 202771 : CTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGC : 202827 221 : aSerHisValTyrGlyGlnLeuAspIleLeuMetValTrpValThrGluTyrValAsn : 239 | !|||! !! !||||||:!!|||:!!||||||!.!|||:!! !.!.! :!!:!! aValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMetAsp 202828 : GGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGAT : 202884 240 : LysSerGluGluMetHisLys : 246 !!..!!!:||| !||| GlyArgSerAspMetSerLys 202885 : GGTCGTTCGGATATGAGTAAA : 202907 vulgar: gi|383850520|ref|XP_003700843.1| 181 246 . KQ414889.1 202712 202907 + 107 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202713 202907 107 + . gene_id 38 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202713 202907 . + . KQ414889.1 exonerate:protein2genome:local exon 202713 202907 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202713 202907 107 + . alignment_id 38 ; Query gi|383850520|ref|XP_003700843.1| ; Align 202713 182 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1290 Query range: 11 -> 406 Target range: 289708 -> 293251 12 : AsnLysTyrTyrAspThrAspIleLysTyrThrPheGluLeuCysGlnTrpIleLeuL : 31 ||| ! !|||!!:|||||||||:::||||||||||||||||||!!.|||||||||| AsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleLeuL 289709 : AACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCTTGA : 289766 32 : ysProLeuGlyIleTyrProPheValTyrSerAsnValSerLysLeuGluArgGlyVa : 50 |||||:!!|||!!:||||||||||||!:!|||..!!.!|||!:!! !|||||| !!. ysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgThrAl 289767 : AACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGC : 289823 51 : lSerValLeuLeuLeuIleThrCysCysSerIleIleGlnPheValIleValProPhe : 69 !||||||||||||:!!:!:..!||||||||||||:!!||||||:!!|||||||||||| aSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValProPhe 289824 : GTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCGTTC : 289880 70 : GlyHisTyrValLeuPheTyrGluLysAspIleAsnAlaArgIleLysPheLeuGlyP : 89 .!!|||:!!||||||||| !!!:!!.|||!!:|||.!! !:!!||| !||||||| SerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuGlyP 289881 : AGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCGGAC : 289940 90 : roLeuThrPheCysSerThrAlaLeuValLysTyrValTyrLeuCysLeuLysAlaPr : 108 ||||||||||||||! !|||.!!!!! !!|||||| !|||!!! !!:!!|||!.! ! roLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGlySe 289941 : CGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGGTTC : 289997 109 : oAlaPheLysArgCysIleGluHisValGluArgAspTrpLysLysLeuGlnAspGln : 127 !|||.!! ||||||:!::!!|||:!!|||||||||||||||! !|||!::|||:!! rAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAspGlu 289998 : AGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGACGAG : 290054 128 : ValTyrArgAspValMetIleAsnTyrIleSerMetGlyArgAsnLeuIleThrValC : 147 ! !:!!|||! !:!!|||:!!!..|||:!:!!!|||.!!||||||||||||! !:!!| AspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysLeuC 290055 : GATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAACTGT : 290114 148 : ysAlaMetPhePheTyrThrGlyGlyLeuSerTyrHisThrValMetProLeuLeuSe : 166 |||||!!:|||!!.|||! !|||||||||||||||:!!||||||!!:||||||!!!|| ysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPheSe 290115 : GCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTTCTC : 290171 167 : rLysValLysThrGlu<->AsnValThrIleArgProLeuThrTyrProGlyTyrGlu : 184 |||| !!....!.!. ||||||||||||||||||||||||||||||||||||||| rLysLysSerValAsnGlyAsnValThrIleArgProLeuThrTyrProGlyTyrGlu 290172 : GAAGAAGAGCGTGAACGGTAACGTGACTATCAGACCTCTAACTTATCCCGGTTACGAG : 290228 185 : AlaPhePheAspValGlnArgSerProThrTyrGluIleValTyrPheMetHisCysI : 204 ! !|||||||||||||||!:!||||||.!!||||||||||||!:!! !|||||||||: GluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetHisCysV 290229 : GAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTG : 290288 205 : leTyrValMetValAlaGlyAsnIleThrMetValAlaTyrSerLeuAlaThrIlePh : 223 !!|||||||||:!!.!!!.!||||||||||||!.!||||||||||||.!!|||||||| alTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePh 290289 : TCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGATCTT : 290345 224 : eThrSerHisAlaCysGlyGlnMetLysIleGlnIleLeuArgLeuGluAsnLeuThr : 242 |.!!!!!|||.!!|||||||||!!:|||||||||! !|||||||||:!!|||||| eAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAspLeuThr 290346 : CGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTGACA : 290402 243 : AspGlu<->ArgValThrGluLysArgGlyGluAspArgLeuThrIleIleValLysA : 261 ! ..! ! !:!! !|||||| !!! !...|||||||||.!!:!!:!!|||!..! LysArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValValValSerG 290403 : AAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTGTGAGCG : 290462 262 : spHisValGluIleLeu{Ar} >>>> Target Intron 1 >>>> {g}PheTh : 269 !|||||||||||||||{!:} 655 bp {!}||||| lyHisValGluIleLeu{Ly}++ ++{s}PheTh 290463 : GTCACGTGGAGATCTTG{AA}gt.........................ag{A}TTCAC : 291141 270 : rLysLeuValGluSerAlaPheArgGluIleCysLeuIleGluValIleValSerThr : 288 |!:!:!!:!!|||||||||!!.!.!||||||! !|||||||||||||||||||||||| rArgMetIleGluSerAlaLeuHisGluIlePheLeuIleGluValIleValSerThr 291142 : GAGGATGATCGAAAGCGCGTTGCATGAAATATTCTTGATAGAAGTAATAGTATCCACT : 291198 289 : LeuLeuIleCysLeuValGluTyrTyrCysLeuMet >>>> Target Intron 2 : 301 :!!|||:!!||||||:!!|||||| !! :!!||| 132 bp ValLeuLeuCysLeuIleGluTyrLeuLeuMetMet++ 291199 : GTGTTACTATGCTTGATCGAATATCTCTTAATGATGgt.................... : 291239 302 : >>>> GluTrpGluThrSerAspSerValAlaIleLeuThrTyrAlaMetLeuLeu : 317 |||||||||!:!|||||||||:!!!.!||||||||||||!.!! |||||| ++GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeu 291240 : .....agGAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTC : 291417 318 : IleSerPheIlePheAsnIleLeuMetPheCysTyrLeuGlyGluLeuLeuLeuGluG : 337 ! !||||||! !||||||||||||!!:|||||||||:!!|||||||||||||||! !| ThrSerPheThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyG 291418 : ACTTCTTTCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGAC : 291477 338 : ln >>>> Target Intron 3 >>>> GlyAsnArgValAlaThrAlaSerTyr : 346 || 913 bp |||!:!..!:!!||| !||||||||| ln++ ++GlySerGluIleAlaHisAlaSerTyr 291478 : AGgt.........................agGGTAGTGAAATCGCGCACGCTTCCTAC : 292417 347 : GluThrLeuTrpTyrAsnLeuProAlaLysLysAlaArgAspMetValLeuLeuLeuA : 366 !!:||| !||||||||||||||| !::!||||||||||||!!:||||||:!!|||| AspThrGluTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuValLeuA 292418 : GATACAGAATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTG : 292477 367 : laIleSerLysThrProProLysLeuThrAlaGlyLysIlePheAspLeuSerLeuTy : 385 |||||!!!||| !||| !||||||||||||||||||||||||! !||||||||| ! laIleThrLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAs 292478 : CCATAACGAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAA : 292534 386 : rThrPheGlyVal >>>> Target Intron 4 >>>> ValLeuLysSerSerM : 395 !|||||||||!.! 652 bp |||||||||||||||: nThrPheGlyAla++ ++ValLeuLysSerSerV 292535 : CACTTTTGGCGCTgt.........................agGTGCTGAAATCGTCGG : 293216 396 : etValTyrLeuAsnValLeuGlnThrMetIleGlu : 406 !:||||||:!!|||:!!|||!:!|||:!:! !||| alValTyrMetAsnMetLeuArgThrValThrGlu 293217 : TAGTTTACATGAACATGCTACGAACCGTCACTGAA : 293251 vulgar: gi|383850740|ref|XP_003700934.1| 11 406 . KQ414889.1 289708 293251 + 1290 M 160 480 G 0 3 M 73 219 G 0 3 M 22 66 S 0 2 5 0 2 I 0 651 3 0 2 S 1 1 M 33 99 5 0 2 I 0 128 3 0 2 M 37 111 5 0 2 I 0 909 3 0 2 M 52 156 5 0 2 I 0 648 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289709 293251 1290 + . gene_id 1 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 289709 290481 . + . KQ414889.1 exonerate:protein2genome:local exon 289709 290481 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 290482 290483 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 290482 291136 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 291135 291136 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 291137 291236 . + . KQ414889.1 exonerate:protein2genome:local exon 291137 291236 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291237 291238 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291237 291368 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 291367 291368 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292548 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292548 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 292549 292550 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 292549 293200 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 293199 293200 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 293201 293251 . + . KQ414889.1 exonerate:protein2genome:local exon 293201 293251 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289709 293251 1290 + . alignment_id 1 ; Query gi|383850740|ref|XP_003700934.1| ; Align 289709 12 480 ; Align 290192 172 219 ; Align 290414 245 66 ; Align 291138 268 99 ; Align 291369 301 111 ; Align 292393 338 156 ; Align 293201 390 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1021 Query range: 6 -> 404 Target range: 299647 -> 302160 7 : AsnGlyValSerProAsnLysTyrTyrAspThrAspIleLysTyrThrPheGluLeuC : 26 :!!||| !! ! !||| ! :!!|||.!.!.!|||||| ! ||||||.!.:!!:!!| AspGlyGlnLeuArgAsnTyrHisTyrGlnAsnAspIleHisTyrThrLeuGlnMetC 299648 : GACGGCCAATTGAGGAATTACCATTACCAAAATGACATACATTACACGCTGCAAATGT : 299705 27 : ysGlnTrpIleLeuLysProLeuGlyIleTyrProPheValTyrSerAsnValSerLy : 45 ||||||||:!:|||||||||:!!|||:!!!::! !!!.:!! !!..!..! !||||| ysGlnTrpLeuLeuLysProIleGlyValTrpArgLeuLeuAspGlnArgSerSerLy 299706 : GCCAATGGTTGTTGAAACCTATCGGAGTATGGCGATTGCTAGATCAACGTTCCAGCAA : 299762 46 : sLeuGluArgGlyValSerValLeuLeuLeuIleThrCysCysSerIleIleGlnPhe : 64 |||||||!.! !||||||:!!:!!|||:!!! !! !|||! !|||! !:!: ||| sLeuGluHisLeuValSerIleValLeuMetThrIleCysPheSerSerLeuPhePhe 299763 : GCTGGAACACCTCGTCTCGATCGTTCTCATGACAATATGCTTCTCCAGTCTGTTCTTC : 299819 65 : ValIleValProPheGlyHisTyrValLeuPheTyrGluLysAspIleAsnAlaArgI : 84 :!!:!!:!!|||! !|||||||||:!!!!!||| ||||||..!|||:!!!.!!:!: IleValLeuProSerGlyHisTyrIlePhePheAlaGluLysSerIleHisValLysV 299820 : ATCGTCTTGCCATCCGGTCATTACATCTTCTTCGCGGAGAAAAGTATACACGTCAAGG : 299879 85 : leLysPheLeuGlyProLeuThrPheCysSerThrAlaLeuValLysTyrValTyrLe : 103 !:||| ! !!!||||||:!! !|||||| !:!!:!!:!!||||||||| !||||| alLysValPheGlyProValGlyPheCysLeuSerSerIleValLysTyrCysTyrLe 299880 : TGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCATCGTCAAATATTGCTATCT : 299936 104 : uCysLeuLysAlaProAlaPheLysArgCysIleGluHisValGluArgAspTrpLys : 122 |||||||!!.!.! !||||||:!!|||||||||:!!||||||||||||||| uCysLeuAsnGlyGlyAlaPheGluArgCysIleGlnHisValGluArgAspUnkUnk 299937 : TTGCCTGAACGGTGGCGCGTTCGAACGATGCATCCAACACGTCGAGAGAGACNNNNNN : 299993 123 : LysLeuGlnAspGlnVal--TyrArgAspValMetIleAsnTyrIleSerMetGlyAr : 141 !!:!:!!## ||| :!!|||:!:!..|||:!:!!!|||.!!|| UnkUnkUnkUnkArgIle##---ArgThrIleMetLeuArgTyrValThrMetSerAr 299994 : NNNNNNNNNNTTCGAATCAT---CGTACGATCATGTTGAGATACGTGACTATGAGCAG : 300049 142 : gAsnLeuIleThrValCysAlaMetPhePheTyrThrGlyGlyLeuSerTyrHisThr : 160 |||||||! ||||||||||||:!!|||.!!|||.!!||||||:!!|||||||||||| gAsnLeuThrThrValCysAlaValPheLeuTyrAlaGlyGlyMetSerTyrHisThr 300050 : AAATCTGACGACCGTGTGCGCCGTGTTTCTTTACGCAGGTGGTATGTCGTATCACACG : 300106 161 : ValMetProLeuLeuSerLysValLys{Th} >>>> Target Intron 1 >>>> : 170 ||||||! !!!!|||||||||! !!:!{! } 48 bp ValMetGlnPheLeuSerLysAspArg{Ar}-- 300107 : GTGATGCAGTTCTTATCGAAGGACAGA{AG}ca......................... : 300140 171 : {r}GluAsnValThrIleArgProLeuThrTyrProGlyTyrGluAlaPhePheAs : 188 {!}|||||| !||| !!:!||||||.!!||||||||||||!!: !|||.!!|| ++{g}GluAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAs 300141 : ag{G}GAGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGA : 300238 189 : pValGlnArgSerProThrTyrGluIleValTyrPheMetHisCysIleTyrValMet : 207 |..!|||! !|||||||||||||||||||||:::|||...||||||.!! !.!||| pThrGlnThrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMet 300239 : TACACAAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATG : 300295 208 : ValAlaGlyAsnIleThrMetValAlaTyrSerLeuAlaThrIlePheThrSerHisA : 227 :!! ! !|||:!:|||! !!.!|||||||||||||||.!!||||||..!!!!||| IleMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisI 300296 : ATCATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATA : 300355 228 : laCysGlyGlnMetLysIleGlnIleLeuArgLeuGluAsnLeuThrAspGluArgVa : 246 !|||||||||!!::!!||||||!!: !|||||||||:!!|||..!!!:..!! !! leCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrGl 300356 : TCTGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGGG : 300412 247 : lThrGluLysArgGlyGluAspArgLeuThrIleIleValLysAspHisValGluIle : 265 ! !:!! ! !||| |||! !|||..!:!!||||||::!|||||||||:!!:!! yGluLysAspAspGlyProAspProLeuValValIleValArgAspHisValLysVal 300413 : AGAGAAGGACGACGGTCCTGATCCTTTGGTCGTTATCGTTCGAGATCACGTGAAGGTT : 300469 266 : Leu{Ar} >>>> Target Intron 2 >>>> {g}PheThrLysLeuValGluS : 274 |||{||} 140 bp {|}|||.!!||| !||||||. Leu{Ar}++ ++{g}PheAlaLysAsnValGluG 300470 : TTA{AG}gt.........................ag{A}TTTGCAAAGAACGTTGAGG : 300636 275 : erAlaPheArgGluIleCysLeuIleGluValIleValSerThrLeuLeuIleCysLe : 293 .!.!!!!.|||!!:.!!||||||:!:|||:!!.!!! !|||||||||:!!:!:||||| luThrLeuArgAspPheCysLeuValGluIlePheGluSerThrLeuIleLeuCysLe 300637 : AAACTTTGCGTGACTTCTGCTTAGTGGAAATCTTCGAGTCCACGCTGATTTTGTGTTT : 300693 294 : uValGluTyrTyrCysLeuMet >>>> Target Intron 3 >>>> GluTrpG : 303 |:!!|||||||||||||||:!! 970 bp ||||||: uLeuGluTyrTyrCysLeuVal++ ++GluTrpG 300694 : GCTCGAATACTACTGTTTGGTGgt.........................agGAATGGC : 301693 304 : luThrSerAspSerValAlaIleLeuThrTyrAlaMetLeuLeuIleSerPheIlePh : 322 !!!.!||||||!!!:!!|||!!:||||||!:! !! ||||||! ||||||! !|| lnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPh 301694 : AAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTT : 301750 323 : eAsnIleLeuMetPheCysTyrLeuGlyGluLeuLeuLeuGluGln >>>> Targe : 338 |||||||!!!!!:|||||||||:!!||||||:!!|||! !|||||| eAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301751 : CAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt.......... : 301800 339 : t Intron 4 >>>> GlyAsnArgValAlaThrAlaSerTyrGluThrLeuTrpTy : 351 80 bp !!!:!!:!:!!!.!:!!||||||||||||! ! !||||| ++CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTy 301801 : ...............agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTA : 301917 352 : rAsnLeuProAlaLysLysAlaArgAspMetValLeuLeuLeuAlaIleSerLysThr : 370 ||||||||||||||||!:!||| !|||:!::!!|||||| !!.!||||||:!! ! rAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyr 301918 : CAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTAT : 301974 371 : ProProLysLeuThrAlaGlyLysIlePheAspLeuSerLeuTyrThrPheGlyVal : 390 |||||||||||||||||||||||||||.!!|||||||||||| !!||||||.!! ! ProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSer+ 301975 : CCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTg : 302034 391 : >>>> Target Intron 5 >>>> ValLeuLysSerSerMetValTyrLeuAsn : 399 82 bp |||:!!|||!!!|||:!!|||||||||||| + ++ValValLysThrSerValValTyrLeuAsn 302035 : t.........................agGTGGTGAAAACATCGGTGGTGTACTTGAAT : 302143 400 : ValLeuGlnThrMet : 404 :!!|||!:!|||:!: LeuLeuArgThrVal 302144 : TTACTGCGAACAGTT : 302160 vulgar: gi|383850740|ref|XP_003700934.1| 6 404 . KQ414889.1 299647 302160 + 1021 M 122 366 F 0 2 G 1 0 M 40 120 S 0 2 5 0 2 I 0 44 3 0 2 S 1 1 M 96 288 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 33 99 5 0 2 I 0 966 3 0 2 M 37 111 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299648 302160 1021 + . gene_id 2 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 299648 300137 . + . KQ414889.1 exonerate:protein2genome:local exon 299648 300137 . + . insertions 0 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local splice5 300138 300139 . + . intron_id 1 ; splice_site "CA" KQ414889.1 exonerate:protein2genome:local intron 300138 300185 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300184 300185 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300186 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300186 300476 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 300616 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 300615 300616 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300617 300716 . + . KQ414889.1 exonerate:protein2genome:local exon 300617 300716 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300717 300718 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300717 301686 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 301685 301686 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 5 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 5 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 4 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302160 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302160 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299648 302160 1021 + . alignment_id 2 ; Query gi|383850740|ref|XP_003700934.1| ; Align 299648 7 366 ; Align 300016 130 120 ; Align 300187 171 288 ; Align 300618 268 99 ; Align 301687 301 111 ; Align 301878 338 156 ; Align 302116 390 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 455 Query range: 14 -> 336 Target range: 226912 -> 228355 15 : TyrAspThrAspIleLysTyrThrPheGluLeuCysGlnTrpIleLeuLysProLeuG : 34 |||.!. ! !!:!:!!. !:!.!.:!!||| !!::|||:!:||||||||||||| TyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuG 226913 : TATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCG : 226970 35 : lyIleTyrProPheValTyrSerAsnValSerLysLeuGluArgGlyValSerValLe : 53 |||||!::|||! ! !!.!!:! |||::!:!!! !||| !! !!||| !|| lyIleTrpProSerSerArgLysSer---SerArgIleGlyArgCysPheSerTrpLe 226971 : GTATCTGGCCGTCGTCGCGCAAAAGC---TCTCGAATAGGAAGATGTTTCTCCTGGTT : 227024 54 : uLeuLeuIleThrCysCysSerIleIleGlnPheValIleValProPheGlyHisTyr : 72 |:!! !.!! !|||! !:!!:!:!!:...|||! !:!:||| !! !||| ||| uMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyr 227025 : GATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTAC : 227081 73 : ValLeuPheTyrGluLysAspIleAsnAlaArgIleLysPheLeuGlyProLeuThrP : 92 |||:!!.!. ! ! !|||! ! ! !! !! !:!:|||.!.:!!||||||:!!:!!| ValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerP 227082 : GTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCT : 227141 93 : heCysSerThrAlaLeuValLysTyrValTyrLeuCysLeuLysAlaProAlaPheLy : 111 ||! !:!!! !:!!|||:!!|||||| ! ||| !!! ! ! ! !! !.!! hePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLe 227142 : TCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCT : 227198 112 : sArgCysIleGluHisValGluArgAspTrpLysLysLeuGlnAspGlnValTyrArg : 130 ..!|||:!!|||!..:!!:!! !!|||||||||!!.:!!::! !!! !! ! !!||| uGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArg 227199 : CGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGA : 227255 131 : AspValMetIleAsnTyrIleSerMetGlyArgAsnLeuIleThrValCysAlaMetP : 150 :!!||||||:!:!..||| ! ! ||||||!!.|||||||||:!!|||.!!.!.| AsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPheP 227256 : AACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTT : 227315 151 : hePheTyrThrGlyGlyLeuSerTyrHisThrValMetProLeu<->LeuSerLysVa : 168 || !!!:!!::... ::: ::::::! !|||:!:|||:!! !.!!!..|| heValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerVa 227316 : TCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGT : 227372 169 : lLysThrGlu<-><->AsnValThrIleArgProLeuThrTyrProGlyTyrGluAla : 185 | !|||||| ||| !!:! !! !! !:!! !!!:!||| ! :!! ! lAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIle 227373 : TGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATC : 227429 186 : PhePheAspValGlnArgSerProThrTyrGluIleValTyrPheMetHisCysIleT : 205 .!! !||||||!:: !|||||| ! !!|||||| !!!:!! :!:!!.! !:!! IleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValT 227430 : ATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAA : 227489 206 : yrValMetValAlaGlyAsnIleThrMetValAlaTyrSerLeuAlaThrIlePheTh : 224 ! !!!:||| ! !..!:!!||| !.!|||! !|||:!!|||.!!:!:.!!.! hrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAl 227490 : CAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGC : 227546 225 : rSerHisAlaCysGlyGlnMetLysIleGlnIleLeuArgLeuGluAsnLeuThrAsp : 243 ! !||||||||||||||||||:!!:!: !:!:! ! !!|||! !:!!|||! !||| aValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAsp 227547 : GGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGAC : 227603 244 : GluArgVal<->ThrGluLysArgGlyGluAspArgLeuThrIleIleValLysAspH : 262 ! |||!.! ! !...|||! ! !!!:||||||:!!.!!! !||||||! !!| GlyArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValThrHisH 227604 : GGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACC : 227663 263 : isValGluIleLeu{Ar} >>>> Target Intron 1 >>>> {g}PheThrLy : 270 |||||..!||||||{!.} 396 bp {!}||| ! isValArgIleLeu{As}++ ++{n}PheLeuAl 227664 : ACGTTCGAATATTG{AA}gt.........................ag{C}TTTCTGGC : 228083 271 : sLeuValGluSerAlaPheArgGluIleCysLeuIleGluValIleValSerThrLeu : 289 |||:!!|||!.!.!!.!.!:!:!!|||..!!!!:!!||| !!:!!! !!!!|||:!! aLeuIleGluLysThrMetGlnGlnIleAlaPheValGluPheLeuGlyCysThrIle 228084 : CCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGTACAATA : 228140 290 : LeuIleCysLeuValGluTyrTyrCysLeuMet >>>> Target Intron 2 >> : 301 :!!:!:||||||:!!||||||||| !:!!! ! 72 bp IleLeuCysLeuIleGluTyrTyrIleIleThr++ 228141 : ATTCTGTGCCTCATCGAGTATTACATCATAACGgt....................... : 228178 302 : >> GluTrpGluThrSerAspSerValAlaIleLeuThrTyrAlaMetLeuLeuIle : 318 ||||||.!. !!!.!!!:! !..! ! !:!!||||||:!! !||||||:!! ++GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeu 228179 : ..agGAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTA : 228299 319 : SerPheIlePheAsnIleLeuMetPheCysTyrLeuGlyGluLeuLeuLeuGlu : 336 ||||||! |||||||||...:::|||||||||:!!||||||:!!:!! !||| SerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGlu 228300 : TCCTTTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAA : 228355 vulgar: gi|383850740|ref|XP_003700934.1| 14 336 . KQ414889.1 226912 228355 + 455 M 28 84 G 1 0 M 121 363 G 0 3 M 7 21 G 0 6 M 75 225 G 0 3 M 20 60 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226913 228355 455 + . gene_id 3 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226913 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226913 227679 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228355 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228355 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226913 228355 455 + . alignment_id 3 ; Query gi|383850740|ref|XP_003700934.1| ; Align 226913 15 84 ; Align 226997 44 363 ; Align 227363 165 21 ; Align 227390 172 225 ; Align 227618 247 60 ; Align 228077 268 99 ; Align 228248 301 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 435 Query range: 17 -> 390 Target range: 232450 -> 235147 18 : AspIleLysTyrThrPheGluLeuCysGlnTrpIleLeuLysProLeuGlyIleTyrP : 37 ||| !:!!|||!:!.!!:!!:!! !!::|||.!!|||! !|||:!!||| !!::| AspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpP 232451 : GACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGC : 232508 38 : roPheValTyrSerAsnValSerLysLeuGluArgGlyValSerValLeuLeuLeuIl : 56 || !||| !!!.!...!|||!:! !:!!!:! !:!!:!! !|||||| !:! roArgVal---ThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLe 232509 : CGCGTGTT---ACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACT : 232562 57 : eThrCysCysSerIleIleGlnPheValIleValProPheGlyHisTyrValLeuPhe : 75 !|||||| !|||:!:!!: ! ! !|||||||||! ! !! !:!:!!|||||| uThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPhe 232563 : CACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTC : 232619 76 : TyrGluLysAspIleAsnAlaArgIleLysPheLeuGlyProLeuThrPheCysSerT : 95 ! !!:! !..!:!!.!.! !|||!!:|||! !:!!||||||:!!!:! !! ! !! GluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuM 232620 : GAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGA : 232679 96 : hrAlaLeuValLysTyrValTyrLeuCysLeuLysAlaProAlaPheLysArgCysIl : 114 !!.! !:!!!!.||| !! !|||! !|||||| !! !.!! !|||:! etGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysVa 232680 : TGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGT : 232736 115 : eGluHisValGluArgAspTrpLysLysLeuGlnAspGlnValTyrArgAspValMet : 133 :|||!!.|||:!!!:!||||||::!!!.:!!:!! ! ! |||:!!||||||:!!||| lGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMet 232737 : GGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATG : 232793 134 : IleAsnTyrIleSerMetGlyArgAsnLeuIleThrValCysAlaMetPhePheTyrT : 153 :!:!!. !! !.!:!:||||||::::!! ! !:!!..!|||.!.! !.!.:!!| LeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisT 232794 : TTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACA : 232853 154 : hrGlyGlyLeuSerTyrHisThrValMetProLeuLeuSerLys<-><-><->ValLy : 169 |||||! ! !||| !!.!.! !|||! !|||! !! !!.. ||| hrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGl 232854 : CCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGG : 232910 170 : sThrGluAsnValThrIleArgProLeuThrTyrProGlyTyrGluAlaPhePheAsp : 188 !!.!|||!:! !:!!!!: !|||||| !!! ! !! !||| ! !.!..!.||| yAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAsp 232911 : GAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGAC : 232967 189 : ValGlnArgSerProThrTyrGluIleValTyrPheMetHisCysIleTyrValMetV : 208 ..!::! !||||||||| !!||||||:!!!:! !!:!:!!.|||:!!! !! !.!.: ThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheI 232968 : ACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCA : 233027 209 : alAlaGlyAsnIleThrMetValAlaTyrSerLeuAlaThrIlePheThrSerHisAl : 227 !!!.!..!::!:!!|||:!!! !|||! !.!!|||!.!.!!:!!.!..!!! !||||| leValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAl 233028 : TCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGC : 233084 228 : aCysGlyGlnMetLysIleGlnIleLeuArgLeuGluAsnLeuThrAspGluArgVal : 246 ||||||||||:!!!!.:!: !!!:! !!:!|||!!::!!|||..!|||! !!:!! ! aCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGly 233085 : GTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGG : 233141 247 : ThrGluLysArg<->GlyGluAspArgLeuThrIleIleValLysAspHisValGluI : 265 !|||:!!||| !.!:!! !:!||| !.!!||||||:!! !!|||:!!...! GlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgT 233142 : CAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTA : 233201 266 : leLeuArgPheThrLys >>>> Target Intron 1 >>>> LeuValGluSer : 274 !||||||!:! !... 1315 bp !:!!|||!:! hrLeuArgTyrLeuSer++ -+AsnIleGluAsn 233202 : CATTAAGGTATTTGTCTgt.........................ggAATATAGAGAAC : 234543 275 : AlaPheArgGluIleCysLeuIleGluValIleValSerThrLeuLeuIleCysLeuV : 294 !.!.!.!.! !|||||||||:!!|||:!!:!!! !!!!|||||| !!!:|||:!!: ValMetAsnLeuIleCysLeuValGluLeuValGlyCysThrLeuAsnMetCysMetL 234544 : GTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACGTTGAACATGTGCATGC : 234603 295 : alGluTyr{Ty} >>>> Target Intron 2 >>>> {r}CysLeuMetGluTr : 302 !!||||||{!!} 180 bp { }|||:!!:!: ! euGluTyr{**}-+ +-{*}CysIleLeuThrSe 234604 : TCGAGTAT{TA}tt.........................aa{A}TGTATTTTAACTTC : 234807 303 : pGluThrSerAspSerValAlaIleLeuThrTyrAlaMetLeuLeuIleSerPheIle : 321 :!! !!........ ::: !:!!|||!.!!!::!!! !:!:|||.!.! ! rGlnGluLysSerLysGluLysLeuAlaSerTyrValIleValTyrValSerMetThr 234808 : TCAGGAAAAgtcgaaggaaaaattagCTTCATACGTCATCGTGTACGTGTCCATGACA : 234864 322 : PheAsnIleLeuMetPheCysTyrLeuGlyGluLeuLeuLeuGluGlnGlyAsnArg{ : 341 |||||||||...:::|||||||||:!!|||||| !||| !||||||! !... !{ PheAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGlnValGlySer{ 234865 : TTtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGCAGGTAGGATCA{ : 234924 342 : V} >>>> Target Intron 3 >>>> {al}AlaThrAlaSerTyrGluThrLe : 349 } 74 bp {!!}!.! ! ! !||| !||| P}+- ++{he}GlyGluLysValTyrMetThrGl 234925 : T}ga.........................ag{TC}GGAGAAAAAGTGTACATGACCGA : 235022 350 : uTrpTyrAsnLeuProAlaLysLysAlaArgAspMetValLeuLeuLeuAlaIleSer : 368 !||||||...|||||| !|||! |||! !! !:!!|||:!!:!!:!!:!!! ||| uTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSer 235023 : ATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCG : 235079 369 : LysThrProProLysLeuThrAlaGlyLysIlePheAspLeuSerLeuTyrThrPheG : 388 !..! ! ! !|||:!!||||||||||||.!!.!..!.:!!|||:!! ||||||| SerMetValIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheG 235080 : AGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTG : 235139 389 : lyValVal : 390 ||! !||| lyAspVal 235140 : GCGATGTG : 235147 vulgar: gi|383850740|ref|XP_003700934.1| 17 390 . KQ414889.1 232450 235147 + 435 M 22 66 G 1 0 M 127 381 G 0 9 M 83 249 G 0 3 M 20 60 5 0 2 I 0 1311 3 0 2 M 26 78 S 0 2 5 0 2 I 0 176 3 0 2 S 1 1 M 43 129 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232451 235147 435 + . gene_id 4 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232451 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232451 233218 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233219 233220 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233219 234533 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234532 234533 . + . intron_id 0 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 234534 234613 . + . KQ414889.1 exonerate:protein2genome:local exon 234534 234613 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234614 234615 . + . intron_id 2 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 234614 234793 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234792 234793 . + . intron_id 1 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 234794 234924 . + . KQ414889.1 exonerate:protein2genome:local exon 234794 234924 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234925 234926 . + . intron_id 3 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 234925 234998 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 234997 234998 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234999 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234999 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232451 235147 435 + . alignment_id 4 ; Query gi|383850740|ref|XP_003700934.1| ; Align 232451 18 66 ; Align 232517 41 381 ; Align 232907 168 249 ; Align 233159 251 60 ; Align 234534 271 78 ; Align 234795 298 129 ; Align 235001 342 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 420 Query range: 20 -> 390 Target range: 256652 -> 258624 21 : TyrThrPheGluLeuCysGlnTrpIleLeuLysProLeuGlyIleTyrProPheValT : 40 |||!:!.!!:!!||| !!:!|||.!!|||||||||:!!||| !!::||| !! TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpPro---ProS 256653 : TACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCA---CCCT : 256707 41 : yrSerAsnValSerLysLeuGluArgGlyValSerValLeuLeuLeuIleThrCysCy : 59 |||::!..!!!!! |||||||||..!||||||:!!:!!||| !|||..!|||! erSerSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTy 256708 : CGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTA : 256764 60 : sSerIleIleGlnPheValIleValProPheGlyHisTyrValLeuPheTyrGluLys : 78 !.!! !||| !|||..!:!::!!|||! ! !! !:!!|||!!!.!! !!!!: ! rGlySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAsp 256765 : TGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGAC : 256821 79 : AspIleAsnAlaArgIleLysPheLeuGlyProLeuThrPheCysSerThrAlaLeuV : 98 ..!.!! ! ::::::||| ...||||||:!!!:! !!! ! !! !::!! !! SerPheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysA 256822 : AGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTG : 256881 99 : alLysTyrValTyrLeuCysLeuLysAlaProAlaPheLysArgCysIleGluHisVa : 117 .!!!.|||..!! |||! |||:!!!.! !! !.!.::: !|||:!!||||||:! laAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIl 256882 : CCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATAT : 256938 118 : lGluArgAspTrpLysLysLeuGlnAspGlnValTyrArgAspValMetIleAsnTyr : 136 !|||! !||||||!:!! !:!!::! :!! ! !!!:!.!.||||||!!:!!. !! eGluThrAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsn 256939 : AGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAAC : 256995 137 : IleSerMetGlyArgAsnLeuIleThrValCysAlaMetPhePheTyrThrGlyGlyL : 156 !!!.!.|||||| !!:!! !||| !!|||||| .!!.!. ! !:!||| . AlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValP 256996 : GCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttt : 257055 157 : euSerTyrHisThrValMetProLeu<-><-><->LeuSerLysValLysThrGluAs : 172 .. ::: ..! ! ! !!||| :!!! ! ! ||| !!.!|||!. heCysPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluTh 257056 : tctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAAC : 257112 173 : nValThrIleArgProLeuThrTyrProGlyTyrGluAlaPhePheAspValGlnArg : 191 ...!! !:!:||| !||| !! ! !!! !|||:!! !.!.!!.:!!|||.!.!:! rThrIleValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGln 257113 : AACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAG : 257169 192 : SerProThrTyrGluIleValTyrPheMetHisCysIleTyrValMetValAlaGlyA : 211 ||||||||| !!||||||||| !||||||!!. ! ! !!!::!!||| !! SerProThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrT 257170 : AGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTA : 257229 212 : snIleThrMetValAlaTyrSerLeuAlaThrIlePheThrSerHisAlaCysGlyGl : 230 .!! !|||:!: ! !!:!|||||||||.!!:!!|||.!!!!!||||||! !||||| hrSerThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGl 257230 : CTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCA : 257286 231 : nMetLysIleGlnIleLeuArgLeu<->GluAsnLeuThrAspGluArgValThrGlu : 248 |:!!! :!:! !!:! ! !!:!! ||| !:!!!.!!!:..!||| ! ||| nLeuThrValLeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGlu 257287 : GTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggag : 257343 249 : LysArgGlyGlu<->AspArgLeuThrIleIleValLysAspHisValGluIleLeuA : 267 ||| ! !:!:!! !:!:||||||:!! !!|||:!!..!:!:|||| LysThrPheProPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeuA 257344 : aaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTGA : 257403 268 : rgPheThrLysLeuValGluSerAlaPheArgGluIleCysLeuIleGluValIleVa : 286 ||! ! ! !:!! |||!.! ! !!.!..!! !:!!...||||||:! rg***AspPheCysIleIleSerValValTrpAsnPheGluArgValSerValIleIl 257404 : GGTAAGATTTTTGCATTATTTCCGTTGTGTGGAATTTCGAAAGGGTTTCTGTGATTAT : 257460 287 : lSerThrLeuLeuIleCysLeuValGluTyrTyrCys >>>> Target Intron : 299 !! !.!!! !! !:!: !!! ! ||| ! 760 bp ePheAlaCys***LeuGlnPheHisIleIleTyrArg+- 257461 : TTTTGCGTGTTAATTGCAGTTTCATATCATATATCGAgg................... : 257501 300 : 1 >>>> LeuMetGluTrpGluThrSerAspSerValAlaIleLeuThrTyrAlaMe : 315 ......||||||...|||...||| ::: :::||| !|| +-PheGlnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheMe 257502 : ......attttcaggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTAT : 258307 316 : tLeuLeuIleSerPheIlePheAsnIleLeuMetPheCysTyrLeuGlyGluLeuLeu : 334 |:!!|||||||||... |||||||||...:::...||||||:!!||||||:!!||| tIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLeu 258308 : GATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATTA : 258364 335 : LeuGluGln >>>> Target Intron 2 >>>> GlyAsnArgValAlaThrAl : 344 !|||||| 90 bp !!!!.!:!|||!.! !!. ThrGluGln++ ++CysLysLysValGlyAspVa 258365 : ACAGAACAGgt.........................agTGCAAGAAAGTTGGCGACGT : 258484 345 : aSerTyrGluThrLeuTrpTyrAsnLeuProAlaLysLysAlaArgAspMetValLeu : 363 ! !||| !||| !|||||| !!||||||! !|||!:! !! !|||:!::!!||| lValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLeu 258485 : GGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTTG : 258541 364 : LeuLeuAlaIleSerLysThrProProLysLeuThrAlaGlyLysIlePheAspLeuS : 383 :!!:!!||| !|||!....! ! !:!!:!!||||||||||||...||| ::!| ValIleAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePheHisMetS 258542 : GTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatGT : 258601 384 : erLeuTyrThrPheGlyValVal : 390 ||:!!|||||||||.!!! !||| erIleTyrThrPheSerAspVal 258602 : CCATTTACACATTCAGCGATGTG : 258624 vulgar: gi|383850740|ref|XP_003700934.1| 20 390 . KQ414889.1 256652 258624 + 420 M 17 51 G 1 0 M 126 378 G 0 9 M 74 222 G 0 3 M 14 42 G 0 3 M 46 138 5 0 2 I 0 756 3 0 2 M 39 117 5 0 2 I 0 86 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256653 258624 420 + . gene_id 5 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256653 257498 . + . KQ414889.1 exonerate:protein2genome:local exon 256653 257498 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 257499 257500 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local intron 257499 258258 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258257 258258 . + . intron_id 0 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local cds 258259 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258259 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256653 258624 420 + . alignment_id 5 ; Query gi|383850740|ref|XP_003700934.1| ; Align 256653 21 51 ; Align 256704 39 378 ; Align 257091 165 222 ; Align 257316 239 42 ; Align 257361 253 138 ; Align 258259 299 117 ; Align 258466 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 400 Query range: 14 -> 272 Target range: 221360 -> 222143 15 : TyrAspThrAspIleLysTyrThrPheGluLeuCysGlnTrpIleLeuLysProLeuG : 34 ||| ! |||:!!:!:|||! !:! ! :!!||| !!!::|||||||||||||||:!!| TyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleG 221361 : TACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCG : 221418 35 : lyIleTyrProPheValTyrSerAsnValSerLysLeuGluArgGlyValSerValLe : 53 ||:!!!::||| !! :!!|||:!!|||! !:!!|||||| !:!!! ! !|| lyValTrpPro---AsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLe 221419 : GTGTTTGGCCA---AATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 54 : uLeuLeuIleThrCysCysSerIleIleGlnPheValIleValProPheGlyHisTyr : 72 |:!! !:!!..!|||! !|||:!:||| !|||:!!:!:||||||! !.!!! !||| uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 73 : ValLeuPheTyrGluLysAspIleAsnAlaArgIleLysPheLeuGlyProLeuThrP : 92 |||:!!.!! ! ! !:!!|||:!! !! !|||||||||!!.||||||||||||!:!| ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 93 : heCysSerThrAlaLeuValLysTyrValTyrLeuCysLeuLysAlaProAlaPheLy : 111 ||||| !! !|||!!!:!!|||||| ! ||| ||| ! ! ! !! !.!!:: heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 112 : sArgCysIleGluHisValGluArgAspTrpLysLysLeuGlnAspGlnValTyrArg : 130 :..!|||||||||!.!:!!||| !!|||||||||!!.:!! !!... ! !!!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 131 : AspValMetIleAsnTyrIleSerMetGlyArgAsnLeuIleThrValCysAlaMetP : 150 |||:!!||||||.!. !! ! !.!.||||||...||||||! !:!!|||.!!.!.| AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 151 : hePheTyrThrGlyGlyLeuSerTyrHisThrValMetProLeu<->LeuSerLysVa : 168 ||.!.|||!:!||| ::: |||::: !!.!!!:|||!!! :!!.!!|||:! heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 169 : lLysThrGlu<-><->AsnValThrIleArgProLeuThrTyrProGlyTyrGluAla : 185 ! .!!:!! |||||||||... |||:!!..!!:!||| !! ..! ! eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 186 : PhePheAspValGlnArgSerProThrTyrGluIleValTyrPheMetHisCysIleT : 205 .!! !!|||..!!:! !||||||..! !!||||||:!!!:!! :!:!!. !!!: IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 206 : yrValMetValAlaGlyAsnIleThrMetValAlaTyrSerLeuAlaThrIlePheTh : 224 ! ! :!! ! !!:!|||||| !!.!|||! !||||||!.!.!!!!:|||.! laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 225 : rSerHisAlaCysGlyGlnMetLysIleGlnIleLeuArgLeuGluAsnLeuThrAsp : 243 ! !||||||||||||||||||:!!:!: !!!: ! !!|||:!!:!!|||! !:!! aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 244 : GluArgValThrGluLysArgGlyGluAsp<->ArgLeuThrIleIleValLysAspH : 262 ! |||!.! ! ! !.!..!! !||| |||:!!.!!! ||||||!!..!.| GlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnH 222052 : GGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAAC : 222111 263 : isValGluIleLeuArgPheThrLysLeuVal : 272 |||||..!||||||!:!!:!..!:::! !:!! isValArgIleLeuGlnTyrValArgCysIle 222112 : ACGTTCGAATATTGCAGTATGTACGTTGTATC : 222143 vulgar: gi|383850740|ref|XP_003700934.1| 14 272 . KQ414889.1 221360 222143 + 400 M 23 69 G 1 0 M 126 378 G 0 3 M 7 21 G 0 6 M 82 246 G 0 3 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221361 222143 400 + . gene_id 6 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221361 222143 . + . KQ414889.1 exonerate:protein2genome:local exon 221361 222143 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221361 222143 400 + . alignment_id 6 ; Query gi|383850740|ref|XP_003700934.1| ; Align 221361 15 69 ; Align 221430 39 378 ; Align 221811 165 21 ; Align 221838 172 246 ; Align 222087 254 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 372 Query range: 16 -> 198 Target range: 294675 -> 295227 17 : ThrAspIleLysTyrThrPheGluLeuCysGlnTrpIleLeuLysProLeuGlyIleT : 36 !.!|||:!: ! !!!:!.!!:!!! !|||!:! !!:!:|||||||||:!!|||:!!! AsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuT 294676 : AACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTT : 294733 37 : yrProPheValTyrSerAsnValSerLysLeuGluArgGlyValSerValLeuLeuLe : 55 ::|||.!!:!!||||||:!!..!|||||||||.!.!:!! !:!!|||:!!:!!|||:! rpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIl 294734 : GGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGAT : 294790 56 : uIleThrCysCysSerIleIleGlnPheValIleValProPheGlyHisTyrValLeu : 74 ! !||| ! !! !:!!! !||||||:!!||||||! !|||:!!!:! !:!! eAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCysVal 294791 : CGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTA : 294847 75 : PheTyrGluLysAspIleAsnAlaArgIleLysPheLeuGlyProLeuThrPheCysS : 94 |||:!!! |||::::::... ::!!!:|||.!!|||||||||:!! !!:!! !! PheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerM 294848 : TTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTA : 294907 95 : erThrAlaLeuValLysTyrValTyrLeuCysLeuLysAlaProAlaPheLysArgCy : 113 ! !:!!:!!:!!!:!||| !! !||| !||||||.!!||||||||||||!.!|| etLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCy 294908 : TGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTG : 294964 114 : sIleGluHisValGluArgAspTrpLysLysLeuGlnAspGlnValTyrArgAspVal : 132 ||||||| !!:!!|||!.!||||||||| !:!!.!.:!!! !! !:!!|||! :!! sIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIle 294965 : CATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATC : 295021 133 : MetIleAsnTyrIleSerMetGlyArgAsnLeuIleThrValCysAlaMetPhePheT : 152 ||||||!!. !! ! !:!: !!:!!..:!!! !..!!.!! !.!!!!:.!..!!| MetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleIleT 295022 : ATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCT : 295081 153 : yrThrGlyGlyLeuSerTyrHisThrValMetProLeuLeuSerLysVal<-><->Ly : 169 ||!:!..!!.!:!!|||||||||.!!:!!:::|||......|||...... !! yrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGluAs 295082 : ACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGAGAA : 295138 170 : sThrGluAsnValThrIleArgProLeuThrTyrProGlyTyrGluAlaPhePheAsp : 188 .! !:!!||| !||||||||| !!||| !! !|||||||||||| !||| ! ||| nLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheValAsp 295139 : CAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGAC : 295195 189 : ValGlnArgSerProThrTyrGluIleVal : 198 !.! ! !||||||||||||||||||:!! AlaTyrSerSerProThrTyrGluIleIle 295196 : GCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: gi|383850740|ref|XP_003700934.1| 16 198 . KQ414889.1 294675 295227 + 372 M 152 456 G 0 6 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294676 295227 372 + . gene_id 7 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294676 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294676 295227 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294676 295227 372 + . alignment_id 7 ; Query gi|383850740|ref|XP_003700934.1| ; Align 294676 17 456 ; Align 295138 169 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 366 Query range: 14 -> 271 Target range: 212854 -> 213634 15 : TyrAspThrAspIleLysTyrThrPheGluLeuCysGlnTrpIleLeuLysProLeuG : 34 |||!!:! ! :::... :::... !! ! !!::|||:!!||||||||| !| TyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrG 212855 : TACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGG : 212912 35 : lyIleTyrProPheValTyrSerAsnValSerLysLeuGluArgGlyValSerValLe : 53 ||:!:!::||| ! ! ! ||| !!|||||| !:!!|||!:!..!:!!:!! !|| lyLeuTrpPro---AspLysSerTyrValSerProIleGluLysAsnIleAlaArgLe 212913 : GTTTGTGGCCC---GACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATT : 212966 54 : uLeuLeuIleThrCysCysSerIleIleGlnPheValIleValProPheGlyHisTyr : 72 |:!! !! !..!|||! !.!!:!:||| !:!:!!:!!:!!|||! !.!! ||| uValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyr 212967 : GGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTAC : 213023 73 : ValLeuPheTyrGluLysAspIleAsnAlaArgIleLysPheLeuGlyProLeuThrP : 92 |||!!!.!! !!! !::::::||| ...|||:!!!!.!!!||| !!!!.!!| ValPheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheAlaP 213024 : GTGTTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTGCAT : 213083 93 : heCysSerThrAlaLeuValLysTyrValTyrLeuCysLeuLysAlaProAlaPheLy : 111 ||||| !.!!|||||| !|||||| !! ||| ||| ! !.! !! !.!!:: heCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleAr 213084 : TTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCG : 213140 112 : sArgCysIleGluHisValGluArgAspTrpLysLysLeuGlnAspGlnValTyrArg : 130 :! !|||:!!||||||:!!:!! !|||||||||!!.:!! ! !!:!!! ! !!!:! gThrCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLys 213141 : TACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAA : 213197 131 : AspValMetIleAsnTyrIleSerMetGlyArgAsnLeuIleThrValCysAlaMetP : 150 !!::!!||| !! |||.!.|||!:!!..:!!:!:|||:!!||||||.!.| GluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPheP 213198 : GAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCT : 213257 151 : hePheTyrThrGlyGlyLeuSerTyrHisThrValMetProLeu<->LeuSerLysVa : 168 ||.!.||||||||| ! !! !||| ! !|||:!:|||:!! !..!|||:! heMetTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLysMe 213258 : TCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAAT : 213314 169 : lLysThrGlu<-><->AsnValThrIleArgProLeuThrTyrProGlyTyrGluAla : 185 ! !.!!||| |||||||||.!!|||! !:!!..! !|||! !! ..! ! tValAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSerArgPhe 213315 : GGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTT : 213371 186 : PhePheAspValGlnArgSerProThrTyrGluIleValTyrPheMetHisCysIleT : 205 .!! !!||||||!:! !||||||..! !!|||||| !!!:!!!.!!:!!. !||| IleValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleIleA 213372 : ATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAG : 213431 206 : yrValMetValAlaGlyAsnIleThrMetValAlaTyrSerLeuAlaThrIlePheTh : 224 !! !:!::!! ! ! !|||.!!:!!||||||! !|||||||||.!!:!:|||.! laGlyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPheAl 213432 : CTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGC : 213488 225 : rSerHisAlaCysGlyGlnMetLysIleGlnIleLeuArgLeuGluAsnLeuThrAsp : 243 ! !|||||||||||||||||| ||| !!!: ! !!||||||:!!|||! !||| aValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAsp 213489 : GGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGAC : 213545 244 : GluArgVal<->ThrGluLysArgGlyGluAspArgLeuThrIleIleValLysAspH : 262 ! |||! ! ! !...|||!.!! !!!:||||||:!!.!!:!!||||||!!..!.| GlyArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleValAsnGlnH 213546 : GGTAGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGC : 213605 263 : isValGluIleLeuArgPheThrLysLeu : 271 |||||..!||||||!:!!::..!:!!||| isValArgIleLeuLysTrpValGluLeu 213606 : ATGTGCGGATACTGAAGTGGGTGGAATTG : 213634 vulgar: gi|383850740|ref|XP_003700934.1| 14 271 . KQ414889.1 212854 213634 + 366 M 23 69 G 1 0 M 126 378 G 0 3 M 7 21 G 0 6 M 75 225 G 0 3 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212855 213634 366 + . gene_id 8 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212855 213634 . + . KQ414889.1 exonerate:protein2genome:local exon 212855 213634 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212855 213634 366 + . alignment_id 8 ; Query gi|383850740|ref|XP_003700934.1| ; Align 212855 15 69 ; Align 212924 39 378 ; Align 213305 165 21 ; Align 213332 172 225 ; Align 213560 247 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 353 Query range: 9 -> 243 Target range: 284490 -> 285207 10 : SerProAsnLysTyrTyrAspThrAspIleLysTyrThrPheGluLeuCysGlnTrpI : 29 ||| !!:!!..! !::||||||||| ! !|||!:! ! :!!:!! !!::|||. SerThrAspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpP 284491 : TCAACCGATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGT : 284548 30 : leLeuLysProLeuGlyIleTyrProPheValTyrSerAsnValSerLysLeuGluAr : 48 !!|||||||||:!!|||:!!!::|||.!! ! !!!! |||!!!! ||||||!: heLeuLysProIleGlyValTrpProLeuSerLeuCys---ValThrThrLeuGluLy 284549 : TTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGC---GTGACCACCTTGGAAAA : 284602 49 : gGlyValSerValLeuLeuLeuIleThrCysCysSerIleIleGlnPheValIleVal : 67 ! ! !||||||:!!||| !:!!! ! !!|||! !:!:||| |||:!!:!:||| sIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuVal 284603 : GATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTA : 284659 68 : ProPheGly<->HisTyrValLeuPheTyrGluLysAspIleAsnAlaArgIleLysP : 86 |||! !!.! ! |||||| ! ! |||:!!:!!.!!!:!||||||. ProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysM 284660 : CCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAA : 284719 87 : heLeuGlyProLeuThrPheCysSerThrAlaLeuValLysTyrValTyrLeuCysLe : 105 !.:!!|||||||||!:!||||||! !! !||| !:!!|||||| ! !||| !! etIleGlyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSe 284720 : TGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTC : 284776 106 : uLysAlaProAlaPheLysArgCysIleGluHisValGluArgAspTrpLys<-><-> : 123 !:::!.! ! !.!! !:!|||:!::!! !!:!!... !||||||... rArgGlyGlyLysIleGlyGlnCysValLysAspIleArgAlaAspTrpSerLeuThr 284777 : GCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACG : 284833 124 : <->LysLeuGlnAspGlnValTyrArgAspValMetIleAsnTyrIleSerMetGlyA : 141 ..!! !......::: |||::::::|||! :!! ! !!!!!!:|||| LeuSerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyA 284834 : CTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGAC : 284893 142 : rgAsnLeuIleThrValCysAlaMetPhePheTyrThrGlyGlyLeuSerTyrHisTh : 160 ||::!||| ! ! !!|||||| |||.!.|||:!!||||||!!!! !||| !|| rgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrTh 284894 : GATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCAC : 284950 161 : rValMetProLeu<-><->LeuSerLysValLysThrGluAsnValThrIleArgPro : 177 ||||||||||||| :!! !!! !! !! ! !!!:|||! !|||:!:||| !! rValMetProLeuCysThrValArgThrGluIleIleAspAsnGluThrValArgSer 284951 : GGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCT : 285007 178 : LeuThrTyrProGlyTyrGluAlaPhePheAspValGlnArgSerProThrTyrGluI : 197 ! !.!!!:!||| !|||...!.!.!!.!!||| !!::! !||||||:!!!:!|||| GlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluI 285008 : CAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGA : 285067 198 : leValTyrPheMetHisCysIleTyrValMetValAlaGlyAsnIleThrMetValAl : 216 ||||| ! ||||||!!.|||:!: !!.!.!.||| ! !::::!!|||:!:! !|| leValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAl 285068 : TCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGC : 285124 217 : aTyrSerLeuAlaThrIlePheThrSerHisAlaCysGlyGlnMetLysIleGlnIle : 235 |! !|||||||||.!!:!:|||..!! !|||!.!|||||||||.!.!:!|||! :!: aCysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuVal 285125 : TTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTG : 285181 236 : LeuArgLeuGluAsnLeuThrAsp : 243 !!:!|||!!:!!.|||..!||| ThrLysLeuAspLysLeuValAsp 285182 : ACAAAGCTGGATAAGCTCGTCGAC : 285207 vulgar: gi|383850740|ref|XP_003700934.1| 9 243 . KQ414889.1 284490 285207 + 353 M 32 96 G 1 0 M 28 84 G 0 3 M 52 156 G 0 9 M 42 126 G 0 6 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284491 285207 353 + . gene_id 9 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284491 285207 . + . KQ414889.1 exonerate:protein2genome:local exon 284491 285207 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284491 285207 353 + . alignment_id 9 ; Query gi|383850740|ref|XP_003700934.1| ; Align 284491 10 96 ; Align 284587 43 84 ; Align 284674 71 156 ; Align 284839 123 126 ; Align 284971 165 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 352 Query range: 11 -> 267 Target range: 208185 -> 208962 12 : AsnLysTyrTyrAspThrAspIleLysTyrThrPheGluLeuCysGlnTrpIleLeuL : 31 |||!:! !!||| ! !.!|||:!:!..!:!!.! !!...||| ! !|||! |||| AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 32 : ysProLeuGlyIleTyrProPheValTyrSerAsnValSerLysLeuGluArgGlyVa : 50 || !:!!||| !!::||| ! ..!..! ||| !||||||!.!.!! ysIleIleGlySerTrpProArgSerIleAspArg---SerTrpLeuGluAsnSerGl 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGT---TCCTGGTTAGAGAACAGCCA : 208297 51 : lSerValLeuLeuLeuIleThrCysCysSerIleIleGlnPheValIleValProPhe : 69 ! !:!!|||||| !:!! ! !! !!!!:!::!! |||:!!:!::!!||| ! nHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThr 208298 : GCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACC : 208354 70 : GlyHisTyrValLeuPheTyrGluLysAspIleAsnAlaArgIleLysPheLeuGlyP : 89 ||| !:!!.!:!!.!! ! :!!|||.!! !!! !!:!:!!|||.!!! !.!! GlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerA 208355 : GGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCG : 208414 90 : roLeuThrPheCysSerThrAlaLeuValLysTyrValTyrLeuCysLeuLysAlaPr : 108 !!|||!:!|||! !! !! !|||!!!..!||||||||| !:!! !:!!:::! ! laLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGl 208415 : CTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGG : 208471 109 : oAlaPheLysArgCysIleGluHisValGluArgAspTrpLysLysLeuGlnAspGln : 127 !! !.!.::!!:!|||:!!|||:!!|||||| !||||||!:!!!.:!!:!! !!:!! yAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGlu 208472 : TGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAG : 208528 128 : ValTyrArgAspValMetIleAsnTyrIleSerMetGlyArgAsnLeuIleThrValC : 147 ! ! !!||| ! :!!|||:!::!! !! |||.!.!.!|||!!.||||||..!:!!| GluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleC 208529 : GAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATAT : 208588 148 : ysAlaMetPhePheTyrThrGlyGlyLeuSerTyrHisThrValMetProLeuLeu<- : 166 ||!.! |||.!.||| !||| ::: |||::: !!.!:!!|||||| ! ysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrAr 208589 : GCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCG : 208645 167 : >SerLysValLysThrGlu<-><->AsnValThrIleArgProLeuThrTyrProGly : 182 ..!|||||| !||| |||:!!||| !||| !|||..!||||||! ! gAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProVal 208646 : AGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTT : 208702 183 : TyrGluAlaPhePheAspValGlnArgSerProThrTyrGluIleValTyrPheMetH : 202 !:!! !.!!.!.||||||!:! !||||||..! !!|||||| !!||| :!:! ProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValG 208703 : CCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTAC : 208762 203 : isCysIleTyrValMetValAlaGlyAsnIleThrMetValAlaTyrSerLeuAlaTh : 221 !.! :!:! ! !.!.|||||| !|||||||||:!:! !|||! !.!!||||||.! lnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAl 208763 : AATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGC : 208819 222 : rIlePheThrSerHisAlaCysGlyGlnMetLysIleGlnIleLeuArgLeuGluAsn : 240 !:!:.!!.!!! !|||||||||||||||:!!:!!||| !!!:! ! !!:!!|||!!. aLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLys 208820 : GCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAG : 208876 241 : LeuThrAspGluArgValThrGluLysArgGlyGluAsp<->ArgLeuThrIleIleV : 259 |||..!|||! !|||! ! !|||:!!!:!..! !||| ||||||.!!! !|||| LeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleV 208877 : TTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCG : 208936 260 : alLysAspHisValGluIleLeuArg : 267 ||:!!.!.||||||..!:!::!!!:! alGluGlnHisValArgValIleLys 208937 : TGGAGCAGCATGTTCGAGTGATCAAG : 208962 vulgar: gi|383850740|ref|XP_003700934.1| 11 267 . KQ414889.1 208185 208962 + 352 M 31 93 G 1 0 M 122 366 G 0 3 M 6 18 G 0 6 M 82 246 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 208962 352 + . gene_id 10 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208186 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208962 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208186 208962 352 + . alignment_id 10 ; Query gi|383850740|ref|XP_003700934.1| ; Align 208186 12 93 ; Align 208279 44 366 ; Align 208648 166 18 ; Align 208672 172 246 ; Align 208921 254 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 351 Query range: 14 -> 267 Target range: 217156 -> 217924 15 : TyrAspThrAspIleLysTyrThrPheGluLeuCysGlnTrpIleLeuLysProLeuG : 34 |||::: :::|||... ::!.!!:!!! ! !!::|||:!:|||||||||:!!| TyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetG 217157 : tacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGG : 217214 35 : lyIleTyrProPheValTyrSerAsnValSerLysLeuGluArgGlyValSerValLe : 53 ||:!!!::||| !! !!!.!..!!!!!:!! !..!!:! !:!!! ! !|| lyLeuTrpPro---AsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLe 217215 : GTCTTTGGCCA---AACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACT : 217268 54 : uLeuLeuIleThrCysCysSerIleIleGlnPheValIleValProPheGlyHisTyr : 72 |:!! ! ! !|||! !.!!:!:|||...|||:!!.!!||||||! !..! ||| uIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyr 217269 : GATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTAC : 217325 73 : ValLeuPheTyrGluLysAspIleAsnAlaArgIleLysPheLeuGlyProLeuThrP : 92 |||!!!.!! ! ! :!!|||:!! !!! !!:!:!:|||.!.!!!|||||||||! !| ValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIleP 217326 : GTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCT : 217385 93 : heCysSerThrAlaLeuValLysTyrValTyrLeuCysLeuLysAlaProAlaPheLy : 111 ||||| !! !|||!!!||||||||| !! !||| !:!! ! ! !!! !.!!:: heCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleAr 217386 : TCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCG : 217442 112 : sArgCysIleGluHisValGluArgAspTrpLysLysLeuGlnAspGlnValTyrArg : 130 :..!|||:!:..!...:!!||||||||||||!:!!!.:!!::! !:!! ! !!||| gGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArg 217443 : CGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGG : 217499 131 : AspValMetIleAsnTyrIleSerMetGlyArgAsnLeuIleThrValCysAlaMetP : 150 !!:!.!|||||| !! !:!.!.||||||!!.|||:!! !:!!|||.!!.!.| GluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPheP 217500 : GAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCT : 217559 151 : hePheTyrThrGlyGlyLeuSerTyrHisThrValMetProLeu<->LeuSerLysVa : 168 ||.!.|||!:!||| ::: |||::: !!.!!!:|||:!! :!!.!!!:!:! heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIl 217560 : TCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAAT : 217616 169 : lLysThrGlu<-><->AsnValThrIleArgProLeuThrTyrProGlyTyrGluAla : 185 ! !:!!||| |||:!!|||.!!! !||||||..!!:!||| ! :!! ! eLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyr 217617 : TCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTAT : 217673 186 : PhePheAspValGlnArgSerProThrTyrGluIleValTyrPheMetHisCysIleT : 205 .!!.!!|||..!!:: !!!!|||||| !!|||||||||!:!|||:!:!!.! ||| IleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleA 217674 : ATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCG : 217733 206 : yrValMetValAlaGlyAsnIleThrMetValAlaTyrSerLeuAlaThrIlePheTh : 224 !! ! :!! ! !...|||||| !!.!|||! !|||||||||.!! !|||.! laGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAl 217734 : CTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGC : 217790 225 : rSerHisAlaCysGlyGlnMetLysIleGlnIleLeuArgLeuGluAsnLeuThrAsp : 243 ! !|||||||||||||||!!::!!:!: !!!: ! !!|||:!!:!!|||! !||| aValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAsp 217791 : GGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGAC : 217847 244 : GluArgValThrGluLysArgGlyGluAsp<->ArgLeuThrIleIleValLysAspH : 262 ! |||!.! ! !!.. ! !! !||| |||:!!.!!! !||||||!...!.| GlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnH 217848 : GGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAAC : 217907 263 : isValGluIleLeuArg : 267 |||||..!||||||!:! isValArgIleLeuLys 217908 : ACGTTCGGATATTAAAG : 217924 vulgar: gi|383850740|ref|XP_003700934.1| 14 267 . KQ414889.1 217156 217924 + 351 M 23 69 G 1 0 M 126 378 G 0 3 M 7 21 G 0 6 M 82 246 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217157 217924 351 + . gene_id 11 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217157 217924 . + . KQ414889.1 exonerate:protein2genome:local exon 217157 217924 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217157 217924 351 + . alignment_id 11 ; Query gi|383850740|ref|XP_003700934.1| ; Align 217157 15 69 ; Align 217226 39 378 ; Align 217607 165 21 ; Align 217634 172 246 ; Align 217883 254 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 345 Query range: 20 -> 342 Target range: 259772 -> 261859 21 : TyrThrPheGluLeuCysGlnTrpIleLeuLysProLeuGlyIleTyrProPheValT : 40 |||!:!.!!:!!!!! !!:!|||.!!|||||||||:!!||| !!::||| !! TyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpPro---ProS 259773 : TATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCA---CCTT : 259827 41 : yrSerAsnValSerLysLeuGluArgGlyValSerValLeuLeuLeuIleThrCysCy : 59 |||::!..!!!!!:!||||||!:! !:!!||||||:!!|||:!!.!!! !|||! erSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTy 259828 : CATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTA : 259884 60 : sSerIleIleGlnPheValIleValProPheGlyHisTyrValLeuPheTyrGluLys : 78 !|||! !|||! ! !!..!:!::!!|||! !! !! !:!!:!!|||.!! ! :!!:!! rSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGlu 259885 : CAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAG : 259941 79 : AspIleAsnAlaArgIleLysPheLeuGlyProLeuThrPheCysSerThrAlaLeuV : 98 ..!:!: !! !!:!! ||| ! ||||||||||||||| !!! ! !..!!.!! !: SerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysI 259942 : AGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTA : 260001 99 : alLysTyrValTyrLeuCysLeuLysAlaProAlaPheLysArgCysIleGluHisVa : 117 !!!!.|||..! |||! |||!:!!.! !! !.!. !!!|||:!:|||||||| leAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisVa 260002 : TTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGT : 260058 118 : lGluArgAspTrpLysLysLeuGlnAspGlnValTyrArgAspValMetIleAsnTyr : 136 ||||!.!||||||!:!! :!! ! :!! ! !!!:!:!!||||||:!:!..||| lGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyr 260059 : GGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATAC : 260115 137 : IleSerMetGlyArgAsnLeuIleThrValCysAlaMetPhePheTyrThrGlyGlyL : 156 !.!.!.|||||| !!:!! !.!! !|||||| ||| ! ! !|||! !| AlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValL 260116 : GCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTC : 260175 157 : euSerTyrHisThrValMetProLeu<-><-><->LeuSerLysValLysThrGluAs : 172 ||!!!!:! ! !|||! ! !||| :!!! !:!!||| !!.!|||!. euCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluTh 260176 : TGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGAC : 260232 173 : nValThrIleArgProLeuThrTyrProGlyTyrGluAlaPhePheAspValGlnArg : 191 . !! !:!!!.!! !||| !!! ! !!! !|||:!!! !.!..!.:!!|||.!. ! rArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAsp 260233 : GAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGAC : 260289 192 : SerProThrTyrGluIleValTyrPheMetHisCysIleTyrValMetValAlaGlyA : 211 ||||||! ! !!||||||||| ! !!:!!!!.! !:!!! ! !.!.:!!!.!..!: SerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnS 260290 : AGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATT : 260349 212 : snIleThrMetValAlaTyrSerLeuAlaThrIlePheThrSerHisAlaCysGlyGl : 230 ::! !|||:!:! ! !!:!|||||||||.!!:!!.!.|||:!!|||||||||||||| erSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGl 260350 : CGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCA : 260406 231 : nMetLysIleGlnIleLeuArgLeuGluAsnLeuThrAspGluArgValThrGluLys : 249 |:!!!!.:!:! !!: ! !!:!! !.!.!!!..!|||||| ! !!.!..!||| nLeuAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLys 260407 : GTTGAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAG : 260463 250 : ArgGlyGlu<-><->AspArgLeuThrIleIleValLysAspHisValGluIleLeuA : 267 !:! !! ! ..!:!! !:!:||||||:!! !!|||:!!..! !|||! LysLysAlaProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeuT 260464 : AAAAAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTCA : 260523 268 : rgPheThrLysLeuValGluSerAlaPheArgGluIleCysLeuIleGluValIleVa : 286 !! ! !!!!! ! !!! ! ! ||| !!! !!!!||| ..!:!!! hr***AspLeuPheAspIleThrPheValArg***ArgIlePheIleIleThrValGl 260524 : CGTAAGATTTGTTTGATATTACTTTTGTACGATAAAGGATTTTTATAATTACGGTAGG : 260580 287 : lSerThrLeuLeuIleCysLeu{Va} >>>> Target Intron 1 >>>> {l} : 294 !||||||:::::: |||{:!} 1109 bp {!} ySerThrIleIle***LysLeu{Il}++ -+{e} 260581 : ATCTactataatttgaaaatta{at}gt.........................tg{a} : 261715 295 : GluTyrTyrCysLeuMetGluTrpGluThrSerAspSerValAlaIleLeuThrTyrA : 314 :::::: |||...||||||! !..!|||! ! ! !:!:! !|||||| TyrPhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrP 261716 : tatttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATT : 261773 315 : laMetLeuLeuIleSerPheIlePheAsnIleLeuMetPheCysTyrLeuGlyGluLe : 333 !|||:!!||||||:!!.!! !||||||:!!!!!!!:.!!||||||:!!||||||:! heMetMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIl 261774 : TCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAAT : 261830 334 : uLeuLeuGluGlnGlyAsnArgValAla : 342 !||| !||||||! !.!.!.!:!!||| eLeuThrGluGlnValGlnHisLeuAla 261831 : ACTAACGGAACAGGTACAACATTTGGca : 261859 vulgar: gi|383850740|ref|XP_003700934.1| 20 342 . KQ414889.1 259772 261859 + 345 M 17 51 G 1 0 M 126 378 G 0 9 M 88 264 G 0 6 M 41 123 S 0 2 5 0 2 I 0 1105 3 0 2 S 1 1 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259773 261859 345 + . gene_id 12 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259773 260605 . + . KQ414889.1 exonerate:protein2genome:local exon 259773 260605 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 260606 260607 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 260606 261714 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261713 261714 . + . intron_id 0 ; splice_site "tg" KQ414889.1 exonerate:protein2genome:local cds 261715 261859 . + . KQ414889.1 exonerate:protein2genome:local exon 261715 261859 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259773 261859 345 + . alignment_id 12 ; Query gi|383850740|ref|XP_003700934.1| ; Align 259773 21 51 ; Align 259824 39 378 ; Align 260211 165 264 ; Align 260481 253 123 ; Align 261716 295 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 334 Query range: 9 -> 243 Target range: 278543 -> 279260 10 : SerProAsnLysTyrTyrAspThrAspIleLysTyrThrPheGluLeuCysGlnTrpI : 29 ||| !!:!!..! !:::!!|||||| ! !|||!:! ! :!!:!! !!::|||. SerThrAspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpP 278544 : TCAACCGATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGT : 278601 30 : leLeuLysProLeuGlyIleTyrProPheValTyrSerAsnValSerLysLeuGluAr : 48 !!|||||||||:!!|||:!!!::|||.!! ! !!!! |||!!!! ||||||!: heLeuLysProIleGlyValTrpProLeuSerLeuCys---ValThrThrLeuGluLy 278602 : TTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGC---GTGACCACCTTGGAAAA : 278655 49 : gGlyValSerValLeuLeuLeuIleThrCysCysSerIleIleGlnPheValIleVal : 67 ! ! !||||||:!!||| !:!!! ! !!|||! !:!:||| |||:!!:!:||| sIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuVal 278656 : GATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTA : 278712 68 : ProPheGly<->HisTyrValLeuPheTyrGluLysAspIleAsnAlaArgIleLysP : 86 |||! !!.! ! |||||| ! ! |||:!!:!!.!!!:!||||||. ProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysM 278713 : CCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAA : 278772 87 : heLeuGlyProLeuThrPheCysSerThrAlaLeuValLysTyrValTyrLeuCysLe : 105 !.:!!|||||||||!:!||||||!!!! !||| !:!!|||||| ! !||| ! etIleGlyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSe 278773 : TGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTC : 278829 106 : uLysAlaProAlaPheLysArgCysIleGluHisValGluArgAspTrpLys<-><-> : 123 !:::!.! ! !.!! !:!|||:!:.!. !!:!!...! !||||||... rArgGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThr 278830 : GCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACA : 278886 124 : <->LysLeuGlnAspGlnValTyrArgAspValMetIleAsnTyrIleSerMetGlyA : 141 ..!! !!::...::: |||::::::|||! :!! ! !!!!!!:|||| LeuSerTyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyA 278887 : CTTTCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGAC : 278946 142 : rgAsnLeuIleThrValCysAlaMetPhePheTyrThrGlyGlyLeuSerTyrHisTh : 160 ||::!||| ! ! !! !!||| |||.!.|||:!!||||||:!!! !||| !.! rgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAl 278947 : GATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGC : 279003 161 : rValMetProLeuLeuSer<-><->LysValLysThrGluAsnValThrIleArgPro : 177 !||||||||||||!!!:!! ! !! !! ! !!!:|||! !|||:!:||| !! aValMetProLeuPheAlaValArgThrGluIleIleAspAsnGluThrValArgSer 279004 : CGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCT : 279060 178 : LeuThrTyrProGlyTyrGluAlaPhePheAspValGlnArgSerProThrTyrGluI : 197 ! !.!!!:!||| !|||...!.!.!!.!!||| !!::! !||||||:!!!:!|||| GlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluI 279061 : CAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGA : 279120 198 : leValTyrPheMetHisCysIleTyrValMetValAlaGlyAsnIleThrMetValAl : 216 ||||| ! ||||||!!.|||:!: !!.!.!.||| ! !::::!!|||:!:! !|| leValGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAl 279121 : TCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGC : 279177 217 : aTyrSerLeuAlaThrIlePheThrSerHisAlaCysGlyGlnMetLysIleGlnIle : 235 |! !|||||| !.!!:!:|||..!! !|||!.!|||||||||.!.!:!|||! :!: aCysSerLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuVal 279178 : TTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTG : 279234 236 : LeuArgLeuGluAsnLeuThrAsp : 243 !!:!|||!!:!!.|||! !||| ThrLysLeuAspLysLeuIleAsp 279235 : ACAAAGCTGGATAAGCTCATCGAC : 279260 vulgar: gi|383850740|ref|XP_003700934.1| 9 243 . KQ414889.1 278543 279260 + 334 M 32 96 G 1 0 M 28 84 G 0 3 M 52 156 G 0 9 M 44 132 G 0 6 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278544 279260 334 + . gene_id 13 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278544 279260 . + . KQ414889.1 exonerate:protein2genome:local exon 278544 279260 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278544 279260 334 + . alignment_id 13 ; Query gi|383850740|ref|XP_003700934.1| ; Align 278544 10 96 ; Align 278640 43 84 ; Align 278727 71 156 ; Align 278892 123 132 ; Align 279030 167 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 295 Query range: 129 -> 267 Target range: 304452 -> 304869 130 : ArgAspValMetIleAsnTyrIleSerMetGlyArgAsnLeuIleThrValCysAlaM : 149 |||!!::!!|||:!!!!.||| ..!|||||||||||||||! ! !:!!||||||! ArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaI 304453 : CGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCA : 304510 150 : etPhePheTyrThrGlyGlyLeuSerTyrHisThrValMetProLeuLeu<-><->Se : 166 !:|||.!.|||||||||||| !! !|||||||||||||||! !!!! ! !! lePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheAlaThrGlyTh 304511 : TATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCGACCGGAAC : 304567 167 : rLysValLysThrGluAsnValThrIleArgProLeuThrTyrProGlyTyrGluAla : 185 ! ! ||| ! ! ! ||| !||||||!:!||||||..!|||||| !|||...||| rTyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProThrTyrSerAla 304568 : GTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCT : 304624 186 : PhePheAspValGlnArgSerProThrTyrGluIleValTyrPheMetHisCysIleT : 205 !!.||||||||||||! !||||||! !||||||:!:|||||||||:!:||||||!!:! LeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheValHisCysMetC 304625 : TTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGT : 304684 206 : yrValMetValAlaGlyAsnIleThrMetValAlaTyrSerLeuAlaThrIlePheTh : 224 !! ! ||| ! !::!|||||| ! !|||! !.!!||||||.!!:!!|||.! ysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAl 304685 : GCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGC : 304741 225 : rSerHisAlaCysGlyGlnMetLysIleGlnIleLeuArgLeuGluAsnLeuThrAsp : 243 !!!!|||||||||||||||!!: ! ||| !!:! !||||||! :!!|||..!:!! aThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAspLeuValAsn 304742 : TACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGATCTTGTCAAC : 304798 244 : GluArgValThrGluLysArgGlyGluAspArgLeuThrIleIleValLysAspHisV : 263 ...!:!! !:!!... ! ! !!: ! ||||||! ! !||||||:!! !!|||: SerLysGluSerSerAspLeu---AspLysArgLeuIleGluIleValGluHisHisL 304799 : AGCAAAGAATCATCTGATTTA---GATAAACGATTAATAGAAATTGTTGAGCATCATT : 304855 264 : alGluIleLeuArg : 267 !!..!||||||||| euArgIleLeuArg 304856 : TGCGAATTTTAAGG : 304869 vulgar: gi|383850740|ref|XP_003700934.1| 129 267 . KQ414889.1 304452 304869 + 295 M 36 108 G 0 6 M 85 255 G 1 0 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304453 304869 295 + . gene_id 14 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304453 304869 . + . KQ414889.1 exonerate:protein2genome:local exon 304453 304869 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 304453 304869 295 + . alignment_id 14 ; Query gi|383850740|ref|XP_003700934.1| ; Align 304453 130 108 ; Align 304567 166 255 ; Align 304822 252 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 288 Query range: 1 -> 337 Target range: 262792 -> 264648 2 : HisAlaArgValSerAsnGlyValSerProAsnLysTyrTyrAspThrAspIleLysT : 21 ||| !|||||| !!.. !..!..! ! :!! !!:!! !!:! !! ! ! | HisArgArgValValThrMetThrAspAspLeuGluSerPheGlySerLeuSerAspT 262793 : CATCGACGAGTTGTCACGATGACCGACGACCTGGAAAGTTTCGGCAGTCTCAGCGACT : 262850 22 : yrThrPheGluLeuCysGlnTrpIleLeuLysProLeuGlyIleTyrProPheValTy : 40 ||!:!.!.:!!:!! !!:!|||:!:|||||||||:!!||| !!::||| :!!! yrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpPro---LeuSe 262851 : ACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCA---CTGTC : 262904 41 : rSerAsnValSerLysLeuGluArgGlyValSerValLeuLeuLeuIleThrCysCys : 59 !:!!::::!!|||!:!:!!|||||| !:!!!!! !!||||||:!!:!!..!|||! ! rAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyr 262905 : CGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTAC : 262961 60 : SerIleIleGlnPheValIleValProPheGlyHisTyrValLeuPheTyrGluLysA : 79 !!!:!!|||! !! !..!:!!:!!|||! ! !! !:!!:!!:!!.!. ! ! :!!: CysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluA 262962 : TGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGA : 263021 80 : spIleAsnAlaArgIleLysPheLeuGlyProLeuThrPheCysSerThrAlaLeuVa : 98 !!.!!:!! !!:!:!::!! !!|||||||||||| ! !! ! !..!!.!:!!:! snPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIl 263022 : ATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGAT : 263078 99 : lLysTyrValTyrLeuCysLeuLysAlaProAlaPheLysArgCysIleGluHisVal : 117 !!!.|||..!!::|||! ||| ! ::! !! !.!.:!! !!|||:!::!!|||||| eAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVal 263079 : CAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTG : 263135 118 : GluArgAspTrpLysLysLeuGlnAspGlnValTyrArgAspValMetIleAsnTyrI : 137 :!!..!|||||| ! :!! !! ! !!!:! !:!!|||:!:!!. !! GlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnA 263136 : CAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACG : 263195 138 : leSerMetGlyArgAsnLeuIleThrValCysAlaMetPhePheTyrThrGlyGlyLe : 156 !.! |||||| !!:!! !.!! !||||||!!:|||.!. ! |||.!! !:! laLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMe 263196 : CGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCAT : 263252 157 : uSerTyrHisThrValMetProLeuLeuSerLysVal<-><-><->LysThrGluAsn : 172 !!!! ! ! !|||! !!!!! !!!!:!!||| !.!|||!.! tCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThr 263253 : GTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACT : 263309 173 : ValThrIleArgProLeuThrTyrProGlyTyrGluAlaPhePheAspValGlnArgS : 192 !! !:!!||| !||| !!! !|||! !|||:!!! !.!!.!! |||.!.! !! ArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThrA 263310 : AGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGA : 263369 193 : erProThrTyrGluIleValTyrPheMetHisCysIleTyrValMetValAlaGlyAs : 211 :!|||||| !!|||||| !! ! !! !!!.! !:!:! ! !.!.:!!!.! ! snProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAl 263370 : ATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGC : 263426 212 : nIleThrMetValAlaTyrSerLeuAlaThrIlePheThrSerHisAlaCysGlyGln : 230 ! !|||:!:! !|||!:!.!!:!!.!!.!!:!:|||.!!.!!||||||||||||||| aThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGln 263427 : GACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAG : 263483 231 : MetLysIleGlnIleLeuArgLeuGluAsnLeuThrAspGluArgValThrGluLysA : 250 :!!!!.:!: !!!:! ! !!:!! !.!.!!!..!:!!:!! ! ! !|||!!.! LeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsnL 263484 : TTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATA : 263543 251 : rgGly<-><->GluAspArgLeuThrIleIleValLysAspHisValGluIleLeu{A : 267 :!..! !..!:!! !:!:||||||:!! !!|||:!!..!:!!|||{! ysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeu{S 263544 : AGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTG{A : 263600 268 : r} >>>> Target Intron 1 >>>> {g}PheThrLysLeuValGluSerAla : 275 !} 832 bp {!}||| ! !||| !:!!! ! ! e}++ +-{r}PheTyrLeuLeuHisLysLeu*** 263601 : G}gt.........................ac{T}TTTTATCTATTGCACAAATTGTGA : 264456 276 : PheArgGluIleCysLeuIleGluValIleValSerThrLeuLeuIleCysLeu---- : 294 ! |||:::... ... ..!|||.!!|||..! !! ! !||||||:!!#### ***ArgGlnPheLeuPheThrSerValPheValGlnGlyTyrAsnIleCysMet#### 264457 : TAAagacaatttttgtttacttcAGTGTTTGTCCAGGGATATAATATTTGTATGAAAT : 264514 295 : ValGluTyrTyrCysLeuMetGluTrpGluThrSerAspSerValAlaIleLeuThrT : 313 :!! ! ! !! !!!!..!|||||||||!:! ||| ::: !|||| IleThrIleAspValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrT 264515 : ATAACAATTGACGTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACAT : 264574 314 : yrAlaMetLeuLeuIleSerPheIlePheAsnIleLeuMetPheCysTyrLeuGlyGl : 332 || !|||:!!|||||||||.!. ! !||||||!!!:!:.!.||||||:!!||||| yrPheMetIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGl 264575 : ATTTCATGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGA : 264631 333 : uLeuLeuLeuGluGln : 337 |:!!||| !|||||| uIleLeuThrGluGln 264632 : GATATTGACTGAGcag : 264648 vulgar: gi|383850740|ref|XP_003700934.1| 1 337 . KQ414889.1 262792 264648 + 288 M 36 108 G 1 0 M 130 390 G 0 9 M 83 249 G 0 6 M 15 45 S 0 2 5 0 2 I 0 828 3 0 2 S 1 1 M 26 78 F 0 4 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262793 264648 288 + . gene_id 15 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262793 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262793 263601 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 264433 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264432 264433 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 264434 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264434 264648 . + . insertions 0 ; deletions 0 ; frameshifts 4 KQ414889.1 exonerate:protein2genome:local similarity 262793 264648 288 + . alignment_id 15 ; Query gi|383850740|ref|XP_003700934.1| ; Align 262793 2 108 ; Align 262901 39 390 ; Align 263300 169 249 ; Align 263555 252 45 ; Align 264435 268 78 ; Align 264517 294 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 280 Query range: 20 -> 267 Target range: 266637 -> 267390 21 : TyrThrPheGluLeuCysGlnTrpIleLeuLysProLeuGlyIleTyrProPheValT : 40 |||!:!.!.:!!||| !!:!|||.!!|||||||||:!!||| !!::||| !! TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpPro---ProL 266638 : TACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCG---CCGT : 266692 41 : yrSerAsnValSerLysLeuGluArgGlyValSerValLeuLeuLeuIleThrCysCy : 59 ||| !..!||||||||||||||| !|||||| ! !|||:!!:!!! !|||! euSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266693 : TGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 60 : sSerIleIleGlnPheValIleValProPheGlyHisTyrValLeuPheTyrGluLys : 78 !!!! !|||! !|||..!:!!:!!|||! ! ! !:!!:!!:!!.!. ! !!::!! rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 79 : AspIleAsnAlaArgIleLysPheLeuGlyProLeuThrPheCysSerThrAlaLeuV : 98 ..!|||..!.!!!:!:!:||| ! !!!|||||||||!:! !!! ! !..!!.! !: SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 99 : alLysTyrValTyrLeuCysLeuLysAlaProAlaPheLysArgCysIleGluHisVa : 117 !!!!.|||..! |||! |||:::::! !! !.!.::: !!|||:!!||||||:! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 118 : lGluArgAspTrpLysLysLeuGlnAspGlnValTyrArgAspValMetIleAsnTyr : 136 !:!!! !||||||!:!! :!! ! !! ! !!!:!.!.||||||:!:!!. !! tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 137 : IleSerMetGlyArgAsnLeuIleThrValCysAlaMetPhePheTyrThrGlyGlyL : 156 !!!!!:|||||| !!:!! !! ! !!|||||| !|||.!. ! !|||! !| AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 157 : euSerTyrHisThrValMetProLeu<->LeuSerLysValLysThrGluAsnValTh : 174 ||.!!||| !..!:!!! ! !!!!! :!!..!! |||:!!..!! |||! !|| euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 175 : r<-><->IleArgProLeuThrTyrProGlyTyrGluAlaPhePheAspValGlnArg : 191 | :!!!.!! !||| !!! ! !!! !|||:!! !.!..!!! |||.!.! ! rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 192 : SerProThrTyrGluIleValTyrPheMetHisCysIleTyrValMetValAlaGlyA : 211 ||||||||| !!||||||||| ! !! !!.! !:!!! ! !.!.:!!!.!..!: SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 212 : snIleThrMetValAlaTyrSerLeuAlaThrIlePheThrSerHisAlaCysGlyGl : 230 ::! !..!:!:! !|||!:!|||||||||.!!:!:|||.!!:!!|||||||||||||| erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 231 : nMetLysIleGlnIleLeuArgLeuGluAsnLeuThrAspGluArgValThrGluLys : 249 |:!!!..:!:! !!!::!! !!:!!:!!.!.!!!..!:!!..! ! ! !...!!. nLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsn 267272 : GCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAAT : 267328 250 : ArgGlyGlu<-><->AspArgLeuThrIleIleValLysAspHisValGluIleLeuA : 267 !:!..!! |||!:!:!! !:!::!!|||:!! !!|||:!!..!:!!|||| LysAsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeuA 267329 : AAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGA : 267388 268 : rg : 267 || rg 267389 : GG : 267390 vulgar: gi|383850740|ref|XP_003700934.1| 20 267 . KQ414889.1 266637 267390 + 280 M 17 51 G 1 0 M 126 378 G 0 3 M 10 30 G 0 6 M 78 234 G 0 6 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266638 267390 280 + . gene_id 16 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266638 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266638 267390 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 266638 267390 280 + . alignment_id 16 ; Query gi|383850740|ref|XP_003700934.1| ; Align 266638 21 51 ; Align 266689 39 378 ; Align 267070 165 30 ; Align 267106 175 234 ; Align 267346 253 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 268 Query range: 15 -> 244 Target range: 204221 -> 204908 16 : AspThrAspIleLysTyrThrPheGluLeuCysGlnTrpIleLeuLysProLeuGlyI : 35 !!: !|||:!:!:!|||.!! ...!!! :!! !|||||| ! !:!!||| GluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyA 204222 : GAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTG : 204279 36 : leTyrProPheValTyrSerAsnValSerLysLeuGluArgGlyValSerValLeuLe : 54 !::||| :!! !||| !||| !!!! !||| !||| !! !:!! laTrpPro---IleProValAsnSerSerProPheThrArgLeuValArgArgIleGl 204280 : CGTGGCCG---ATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGA : 204333 55 : uLeuIleThrCysCysSerIleIleGlnPheValIleValProPheGlyHisTyrVal : 73 !! !:!!..! ! :::... ...:!!||||||||| ! ! |||||| uHisValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrVal 204334 : ACACGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTG : 204390 74 : LeuPheTyrGluLysAspIleAsnAlaArgIleLysPheLeuGlyProLeuThrPheC : 93 !!!.!. ! ||||||:!! !!!. !|||:!:|||.!!|||||||||:!!..! !| PheLeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnC 204391 : TTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACT : 204450 94 : ysSerThrAlaLeuValLysTyrValTyrLeuCysLeuLysAlaProAlaPheLysAr : 112 |||||! ! !!!! !!|||||| ! !:!! !! !::! ! ! !.!!:!!!: ysSerIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLy 204451 : GCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAA : 204507 113 : gCysIleGluHisValGluArgAspTrpLysLysLeuGlnAspGlnValTyrArgAsp : 131 ! !!:!:.!. !:!!..!|||||||||! !:!! ! !|||:!! !!||| sSerLeuAsnThrIleArgArgAspTrpIleGluAlaThrAspGlu---AsnArgLeu 204508 : GAGTTTGAACACCATCAGACGCGACTGGATAGAGGCTACGGATGAA---AATCGGTTG : 204561 132 : ValMetIleAsnTyrIleSerMetGlyArgAsnLeuIleThrValCysAlaMetPheP : 151 :!!.!. !::: ! !.!!!:||||||!..:!!:!: !:!!...||| !. IlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrM 204562 : ATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTA : 204621 152 : heTyrThrGlyGlyLeuSerTyrHisThrValMetProLeuLeu<-><->SerLysVa : 168 !.||| !|||||||||!!!|||...|||:!!:!:||||||||| !!!! || etTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleVa 204622 : TGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGT : 204678 169 : lLysThrGluAsnValThrIleArgProLeuThrTyrProGlyTyrGluAlaPhePhe : 187 |! ! !!!!:||||||||||||||||||||| !!! !|||! !||| ...|||||| lThrProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePhe 204679 : AACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttcttt : 204735 188 : AspValGlnArgSerProThrTyrGluIleValTyrPheMetHisCysIleTyrValM : 207 :::! !||||||||||||!.!||||||||||||!:!.!.:!!!!. !!!: !! !. AsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyP 204736 : aacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTT : 204795 208 : etValAlaGlyAsnIleThrMetValAlaTyrSerLeuAlaThrIlePheThrSerHi : 226 !.|||.!! ! !:!!! !! ! !.!!! !.!!:!!..!.!!:!:|||..! !|| heValThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHi 204796 : TTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCA : 204852 227 : sAlaCysGlyGlnMetLysIleGlnIleLeuArgLeuGluAsnLeuThrAspGlu : 244 |||||||.!!..!:!!!:!||| !:!: !!:!:!!.!. |||..!|||:!! sAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLys 204853 : CGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAG : 204908 vulgar: gi|383850740|ref|XP_003700934.1| 15 244 . KQ414889.1 204221 204908 + 268 M 22 66 G 1 0 M 89 267 G 1 0 M 37 111 G 0 6 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204222 204908 268 + . gene_id 17 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204222 204908 . + . KQ414889.1 exonerate:protein2genome:local exon 204222 204908 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 204222 204908 268 + . alignment_id 17 ; Query gi|383850740|ref|XP_003700934.1| ; Align 204222 16 66 ; Align 204288 39 267 ; Align 204555 129 111 ; Align 204672 166 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 238 Query range: 277 -> 406 Target range: 280022 -> 280483 278 : GluIleCysLeuIleGluValIleValSerThrLeuLeuIleCysLeuValGluTyrT : 297 !!::!!|||! !.!!.!.:!!:!!:!!:!!! !:!! !.!! !:!! !..!! ! AspLeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerLeuS 280023 : GACTTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGTTGT : 280080 298 : yrCysLeuMetGluTrpGluThrSerAspSerValAlaIleLeuThrTyrAlaMetLe : 316 !!!! !||||||||| !!:!|||:!!:!!!.!! !!!|||||| !|||!! erValPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPh 280081 : CAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTT : 280137 317 : uLeuIleSerPheIlePheAsnIleLeuMetPheCysTyrLeuGlyGluLeuLeuLeu : 335 !|||||||||!!.! ||||||:!!!!!!!:.!!||||||:!!||||||:!!|||! ! eLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSer 280138 : TCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCC : 280194 336 : GluGln >>>> Target Intron 1 >>>> GlyAsnArgValAlaThrAlaSe : 345 |||||| 74 bp !! !:!|||!.!..!:!!!! GluGln++ ++CysLeuLysValGlyValSerTh 280195 : GAACaggt.........................agTGCTTAAAAGTCGGCGTGTCAAC : 280298 346 : rTyrGluThrLeuTrpTyrAsnLeuProAlaLysLysAlaArgAspMetValLeuLeu : 364 !||| !! ! !||||||..!||||||!.!|||||||||!:!! !:!!:!!|||:!! rTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIle 280299 : TTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATA : 280355 365 : LeuAlaIleSerLysThrProProLysLeuThrAlaGlyLysIlePheAspLeuSerL : 384 !!!|||:!:|||!!.:!! !! !|||||||||||||||||||||.!!|||||||||| PheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerL 280356 : TTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTT : 280415 385 : euTyrThrPheGlyValValLeuLysSerSerMetValTyrLeuAsnValLeuGlnTh : 403 || !!:!||| !! !||| !! ! !!:!:!: !|||! !:!!:!!! !.!.!. euSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeuTyrAspAs 280416 : TAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTGTACGATAA : 280472 404 : rMetIleGlu : 406 ! .!!||| nCysPheGlu 280473 : TTGTTTTGAA : 280483 vulgar: gi|383850740|ref|XP_003700934.1| 277 406 . KQ414889.1 280022 280483 + 238 M 60 180 5 0 2 I 0 70 3 0 2 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280023 280483 238 + . gene_id 18 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280023 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280023 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280483 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280483 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280023 280483 238 + . alignment_id 18 ; Query gi|383850740|ref|XP_003700934.1| ; Align 280023 278 180 ; Align 280277 338 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 230 Query range: 277 -> 406 Target range: 286809 -> 287270 278 : GluIleCysLeuIleGluValIleValSerThrLeuLeuIleCysLeuValGluTyrT : 297 !!::!:|||! ! !.!...!:!!:!!:!!! !:!! !.!! !:!! !..!! ! AspLeuCysTyrTyrHisThrValMetAlaIleIleAlaPheValMetTyrSerLeuS 286810 : GACTTGTGTTATTACCATACTGTAATGGCAATAATTGCATTCGTCATGTACTCGTTGT : 286867 298 : yrCysLeuMetGluTrpGluThrSerAspSerValAlaIleLeuThrTyrAlaMetLe : 316 !!!! !||||||||| !|||!!:!!!:!!!.!! :!!||||||..!! !|| erValPhe***GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLe 286868 : CAGTTTTCTAGGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTT : 286924 317 : uLeuIleSerPheIlePheAsnIleLeuMetPheCysTyrLeuGlyGluLeuLeuLeu : 335 ||||:!!||||||! ||||||:!!!!!!!:.!!||||||:!!||||||:!!|||! ! uLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSer 286925 : GCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCC : 286981 336 : GluGln >>>> Target Intron 1 >>>> GlyAsnArgValAlaThrAlaSe : 345 |||||| 74 bp !! !:!|||!.! !:!!!! GluGln++ ++CysLeuLysValGlyLeuSerTh 286982 : GAACaggt.........................agtGCTTAAAAGTCGGCTTGTCAAC : 287085 346 : rTyrGluThrLeuTrpTyrAsnLeuProAlaLysLysAlaArgAspMetValLeuLeu : 364 !||| !! ! !||||||..!||||||!.!|||! !|||!:!! !:!!:!!|||:!! rTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIle 287086 : TTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATA : 287142 365 : LeuAlaIleSerLysThrProProLysLeuThrAlaGlyLysIlePheAspLeuSerL : 384 !!!|||:!:|||!!.:!! !! !|||||||||||||||||||||.!!|||||||||| PheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerL 287143 : TTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTT : 287202 385 : euTyrThrPheGlyValValLeuLysSerSerMetValTyrLeuAsnValLeuGlnTh : 403 || !!:!||| !! !||| !! ! !!:!:!: !|||! !:!!:!!! ..... euSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeuTyrAspAs 287203 : TAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTGTacgataa : 287259 404 : rMetIleGlu : 406 .......||| nPhePheGlu 287260 : tttttttgaa : 287270 vulgar: gi|383850740|ref|XP_003700934.1| 277 406 . KQ414889.1 286809 287270 + 230 M 60 180 5 0 2 I 0 70 3 0 2 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286810 287270 230 + . gene_id 19 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286810 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286810 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287270 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287270 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286810 287270 230 + . alignment_id 19 ; Query gi|383850740|ref|XP_003700934.1| ; Align 286810 278 180 ; Align 287064 338 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 186 Query range: 300 -> 390 Target range: 277371 -> 277713 301 : GluTrpGluThrSerAspSerValAlaIleLeuThrTyrAlaMetLeuLeuIleSerP : 320 ||||||... !|||||| ! !.!!!!: !|||:!! !|||:!!|||||||||. GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 321 : heIlePheAsnIleLeuMetPheCysTyrLeuGlyGluLeuLeuLeuGluGln >>> : 338 !. |||||||||... ! ||||||:!!||||||:!!||| !|||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 339 : > Target Intron 1 >>>> GlyAsnArgValAlaThrAlaSerTyrGluThrL : 349 72 bp !!!!.!:!|||!.! !!.! !||| !||| ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 350 : euTrpTyrAsnLeuProAlaLysLysAlaArgAspMetValLeuLeuLeuAlaIleSe : 368 !|||||| !!||||||! !||| ! !! !:!!:!!:!!|||:!!:!!:!!! !|| snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 369 : rLysThrProProLysLeuThrAlaGlyLysIlePheAspLeuSerLeuTyrThrPhe : 387 |!.. |||:::||||||||||||:::......:::|||:!!||||||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 388 : GlyValVal : 390 |||! !||| GlyAspVal 277703 : GGCGATGTA : 277713 vulgar: gi|383850740|ref|XP_003700934.1| 300 390 . KQ414889.1 277371 277713 + 186 M 37 111 5 0 2 I 0 68 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277713 186 + . gene_id 20 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277713 186 + . alignment_id 20 ; Query gi|383850740|ref|XP_003700934.1| ; Align 277372 301 111 ; Align 277555 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 181 Query range: 300 -> 390 Target range: 272836 -> 273176 301 : GluTrpGluThrSerAspSerValAlaIleLeuThrTyrAlaMetLeuLeuIleSerP : 320 |||||| ! !|||! ! !::!:!! !|||||| !|||:!!|||||||||. GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 321 : heIlePheAsnIleLeuMetPheCysTyrLeuGlyGluLeuLeuLeuGluGln >>> : 338 !. |||||||||...::: ||||||:!!||||||:!!||| !|||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 339 : > Target Intron 1 >>>> GlyAsnArgValAlaThrAlaSerTyrGluThrL : 349 70 bp ...::::::... !!.! !||| !||| ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 350 : euTrpTyrAsnLeuProAlaLysLysAlaArgAspMetValLeuLeuLeuAlaIleSe : 368 !|||||| !!||||||!.!||| ! !! !|||:!!:!!|||:!!:!!:!!! !!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 369 : rLysThrProProLysLeuThrAlaGlyLysIlePheAspLeuSerLeuTyrThrPhe : 387 !!....! ! !|||:!!|||||||||!:!||| !! !:!!|||:!!||||||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 388 : GlyValVal : 390 |||! !||| GlyAspVal 273166 : GGCGATGTA : 273176 vulgar: gi|383850740|ref|XP_003700934.1| 300 390 . KQ414889.1 272836 273176 + 181 M 37 111 5 0 2 I 0 66 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273176 181 + . gene_id 21 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273176 181 + . alignment_id 21 ; Query gi|383850740|ref|XP_003700934.1| ; Align 272837 301 111 ; Align 273018 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 336 -> 396 Target range: 297641 -> 297821 337 : GlnGlyAsnArgValAlaThrAlaSerTyrGluThrLeuTrpTyrAsnLeuProAlaL : 356 |||!.!.!.!:! !!!.!!.!|||:!!|||.!.! ! !||||||||||||||| !!! GlnAlaGluLysPheGlyAsnAlaAlaTyrAsnIleGluTrpTyrAsnLeuProProA 297642 : CAGGCTGAAAAATTCGGCAATGCAGCTTATAACATCGAATGGTACAACTTACCGCCAA : 297699 357 : ysLysAlaArgAspMetValLeuLeuLeuAlaIleSerLysThrProProLysLeuTh : 375 !.!:!|||! !|||:!!||||||:!!:!!!.!|||:!!||| !||||||!:!||||| snArgAlaLeuAspLeuValLeuMetIleGlyIleAlaLysPheProProArgLeuTh 297700 : ACAGGGCTCTCGATCTGGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCAC : 297756 376 : rAlaGlyLysIlePheAspLeuSerLeuTyrThrPheGlyValValLeuLysSerSer : 394 |...|||||||||||||||:::|||:!! !!||||||.!!!.!|||! !!::...||| rGlyGlyLysIlePheAspIleSerIleAsnThrPheSerAlaValArgArgGlnSer 297757 : AggtggaaaaatattcgatatatCGATAAACACGTTCAGTGCCGTACGTAgacaaagt : 297813 395 : MetVal : 396 :::::: LeuIle 297814 : ttaatt : 297821 vulgar: gi|383850740|ref|XP_003700934.1| 336 396 . KQ414889.1 297641 297821 + 162 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297642 297821 162 + . gene_id 22 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297642 297821 . + . KQ414889.1 exonerate:protein2genome:local exon 297642 297821 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297642 297821 162 + . alignment_id 22 ; Query gi|383850740|ref|XP_003700934.1| ; Align 297642 337 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 339 -> 396 Target range: 254280 -> 254451 340 : ArgValAlaThrAlaSerTyrGluThrLeuTrpTyrAsnLeuProAlaLysLysAlaA : 359 !:!|||!.! !!.! !||| !||| !|||||| !!|||||| !!:!!:! !! LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 254281 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 254338 360 : rgAspMetValLeuLeuLeuAlaIleSerLysThrProProLysLeuThrAlaGlyLy : 378 !|||:!::!!|||:!!:!!.!! !|||!!...! ! !:!!:!!||||||||||| euAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLy 254339 : TCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaa : 254395 379 : sIlePheAspLeuSerLeuTyrThrPheGlyValValLeuLysSerSerMetVal : 396 ||||||| :::||||||||||||||||||! !||| !:!!!!!!:!:!:||| sIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeuVal 254396 : aatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTTGTT : 254451 vulgar: gi|383850740|ref|XP_003700934.1| 339 396 . KQ414889.1 254280 254451 + 126 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254281 254451 126 + . gene_id 23 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254281 254451 . + . KQ414889.1 exonerate:protein2genome:local exon 254281 254451 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254281 254451 126 + . alignment_id 23 ; Query gi|383850740|ref|XP_003700934.1| ; Align 254281 340 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 336 -> 387 Target range: 206239 -> 206392 337 : GlnGlyAsnArgValAlaThrAlaSerTyrGluThrLeuTrpTyrAsnLeuProAlaL : 356 |||..!:!! !|||!.! !.!!|||! ! !..! !||||||..!|||||| !! GlnAsnHisValValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnA 206240 : CAGAACCACGTCGTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACA : 206297 357 : ysLysAlaArgAspMetValLeuLeuLeuAlaIleSerLysThrProProLysLeuTh : 375 :! ! ||||||..!|||:!!|||:!!:!!|||!!:|||!!. !||| !|||||||| rgHisAlaArgSerMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuTh 206298 : GACATGCGCGCTCTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAAC : 206354 376 : rAlaGlyLysIlePheAspLeuSerLeuTyrThrPhe : 387 ||||||||||!!:|||!!::!!|||||| !!:!||| rAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206355 : AGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206392 vulgar: gi|383850740|ref|XP_003700934.1| 336 387 . KQ414889.1 206239 206392 + 121 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206240 206392 121 + . gene_id 24 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206240 206392 . + . KQ414889.1 exonerate:protein2genome:local exon 206240 206392 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206240 206392 121 + . alignment_id 24 ; Query gi|383850740|ref|XP_003700934.1| ; Align 206240 337 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 296 -> 337 Target range: 305088 -> 305211 297 : TyrCysLeuMetGluTrpGluThrSerAspSerValAlaIleLeuThrTyrAlaMetL : 316 ||| ..!!!:||||||!:!|||:!!!!!|||::!:!! !||||||.!!:!!| TyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValL 305089 : tatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGT : 305146 317 : euLeuIleSerPheIlePheAsnIleLeuMetPheCysTyrLeuGlyGluLeuLeuLe : 335 ||||||||||| ! ! !|||||||||!!!!!:!!.||||||:!!||||||:!!|||:! euLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMe 305147 : TACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTAT : 305203 336 : uGluGln : 337 !|||:!! tGluLys 305204 : GGAAAAG : 305211 vulgar: gi|383850740|ref|XP_003700934.1| 296 337 . KQ414889.1 305088 305211 + 120 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305089 305211 120 + . gene_id 25 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305089 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305089 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305089 305211 120 + . alignment_id 25 ; Query gi|383850740|ref|XP_003700934.1| ; Align 305089 297 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 296 -> 337 Target range: 210651 -> 210774 297 : TyrCysLeuMetGluTrpGluThrSerAspSerValAlaIleLeuThrTyrAlaMetL : 316 !:! !||| !||||||!!::!!!.!||| !!:!!::!! !||||||||| !:!:| PheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValL 210652 : TTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTAC : 210709 317 : euLeuIleSerPheIlePheAsnIleLeuMetPheCysTyrLeuGlyGluLeuLeuLe : 335 |||||! !||| !!! |||||||||!!!!!:|||||||||:!!||||||:!!||| euLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAl 210710 : TCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGC : 210766 336 : uGluGln : 337 !|||||| aGluGln 210767 : TGAACAg : 210774 vulgar: gi|383850740|ref|XP_003700934.1| 296 337 . KQ414889.1 210651 210774 + 119 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210652 210774 119 + . gene_id 26 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 210652 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210652 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210652 210774 119 + . alignment_id 26 ; Query gi|383850740|ref|XP_003700934.1| ; Align 210652 297 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 339 -> 395 Target range: 238634 -> 238802 340 : ArgValAlaThrAlaSerTyrGluThrLeuTrpTyrAsnLeuProAlaLysLysAlaA : 359 !:!|||!.! !!.! !||| !||| !|||||| !!|||||| !!:!!:! !! LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 238635 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 238692 360 : rgAspMetValLeuLeuLeuAlaIleSerLysThrProProLysLeuThrAlaGlyLy : 378 !|||:!::!!|||:!!:!! ! !|||!!...! ! !|||:!!||||||||||| euAspLeuIleLeuIleIleLysArgSerAsnValValValLysValThrAlaGlyLy 238693 : TCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCACCGCTGGAAA : 238749 379 : sIlePheAspLeuSerLeuTyrThrPheGlyValValLeuLysSerSerMet : 395 |:!!!!. !!:!!||||||||||||||||||! !||| !:!!!!!!:!:!: sValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeu 238750 : AGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTT : 238802 vulgar: gi|383850740|ref|XP_003700934.1| 339 395 . KQ414889.1 238634 238802 + 117 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238635 238802 117 + . gene_id 27 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238635 238802 . + . KQ414889.1 exonerate:protein2genome:local exon 238635 238802 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238635 238802 117 + . alignment_id 27 ; Query gi|383850740|ref|XP_003700934.1| ; Align 238635 340 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 339 -> 396 Target range: 244664 -> 244835 340 : ArgValAlaThrAlaSerTyrGluThrLeuTrpTyrAsnLeuProAlaLysLysAlaA : 359 !:!|||!.! !!.! !||| !||| !|||||| !!|||||| !!:!!:! !! LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 244665 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 244722 360 : rgAspMetValLeuLeuLeuAlaIleSerLysThrProProLysLeuThrAlaGlyLy : 378 !|||:!::!!|||:!!:!! ! !|||!!.! ! ! !:!!:!!||||||||||| euAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleThrAlaGlyLy 244723 : TCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCACCGCTGGAAA : 244779 379 : sIlePheAspLeuSerLeuTyrThrPheGlyValValLeuLysSerSerMetVal : 396 |:!!!!. !!:!!||||||||||||||||||! !||| !:!!!!!!.!:!:||| sValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrLysLeuVal 244780 : AGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAACTTGTT : 244835 vulgar: gi|383850740|ref|XP_003700934.1| 339 396 . KQ414889.1 244664 244835 + 116 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244665 244835 116 + . gene_id 28 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244665 244835 . + . KQ414889.1 exonerate:protein2genome:local exon 244665 244835 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244665 244835 116 + . alignment_id 28 ; Query gi|383850740|ref|XP_003700934.1| ; Align 244665 340 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 300 -> 337 Target range: 219328 -> 219439 301 : GluTrpGluThrSerAspSerValAlaIleLeuThrTyrAlaMetLeuLeuIleSerP : 320 ||||||:!!:!!!:!||| !..!::! !:!!|||||| !!!:||||||||||||. GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 321 : heIlePheAsnIleLeuMetPheCysTyrLeuGlyGluLeuLeuLeuGluGln : 337 !. |||||||||...:::|||||||||:!!||||||:!!:!! !|||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: gi|383850740|ref|XP_003700934.1| 300 337 . KQ414889.1 219328 219439 + 115 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219439 115 + . gene_id 29 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219439 115 + . alignment_id 29 ; Query gi|383850740|ref|XP_003700934.1| ; Align 219329 301 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 292 -> 337 Target range: 214605 -> 214740 293 : LeuValGluTyrTyrCysLeuMetGluTrpGluThrSerAspSerValAlaIleLeuT : 312 :::|||:::::: ||| ||||||.!.:!!!:!:!!! !..!.!!! !:!!| IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 313 : hrTyrAlaMetLeuLeuIleSerPheIlePheAsnIleLeuMetPheCysTyrLeuGl : 331 |||||!.!:!!|||! !||||||... |||||||||...:::|||||||||:!!|| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 332 : yGluLeuLeuLeuGluGln : 337 |||||||:!!! !|||||| yGluLeuValSerGluGln 214721 : CGAGCTTGTGTCTGAACAG : 214740 vulgar: gi|383850740|ref|XP_003700934.1| 292 337 . KQ414889.1 214605 214740 + 113 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 214740 113 + . gene_id 30 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 214740 113 + . alignment_id 30 ; Query gi|383850740|ref|XP_003700934.1| ; Align 214606 293 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 264 -> 299 Target range: 304930 -> 305035 265 : IleLeuArgPheThrLysLeuValGluSerAlaPheArgGluIleCysLeuIleGluV : 284 |||! !||||||:!! !:!!|||:!!!!!!.!!!.!:!|||:!!|||!!!:!:||| IleTyrArgPheSerAlaIleValGlnThrValLeuGlnGluValCysPheLeuGluP 304931 : ATTTATAGATTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTTCTTGGAAT : 304988 285 : alIleValSerThrLeuLeuIleCysLeuValGluTyrTyrCysLeu : 299 !!|||! !|||||||||||||||||||||:!!||||||||||||:!! heIleGlySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysIle 304989 : TCATTGGTTCTACCTTACTGATATGTCTACTTGAATACTACTGTATA : 305035 vulgar: gi|383850740|ref|XP_003700934.1| 264 299 . KQ414889.1 304930 305035 + 113 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304931 305035 113 + . gene_id 31 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304931 305035 . + . KQ414889.1 exonerate:protein2genome:local exon 304931 305035 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304931 305035 113 + . alignment_id 31 ; Query gi|383850740|ref|XP_003700934.1| ; Align 304931 265 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 298 -> 337 Target range: 224317 -> 224434 299 : LeuMetGluTrpGluThrSerAspSerValAlaIleLeuThrTyrAlaMetLeuLeuI : 318 !!!...||||||...:::||| !!! !..!::! :!!|||||| !!!:||||||! PheGlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuM 224318 : TTTCaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCA : 224375 319 : leSerPheIlePheAsnIleLeuMetPheCysTyrLeuGlyGluLeuLeuLeuGluGl : 337 !:|||... |||||||||...:::|||||||||::!|||||||||:!! !||||| etSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl 224376 : TGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAca : 224432 338 : n : 337 | n 224433 : g : 224434 vulgar: gi|383850740|ref|XP_003700934.1| 298 337 . KQ414889.1 224317 224434 + 108 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224318 224434 108 + . gene_id 32 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224318 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224318 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224318 224434 108 + . alignment_id 32 ; Query gi|383850740|ref|XP_003700934.1| ; Align 224318 299 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 336 -> 390 Target range: 264723 -> 264885 337 : GlnGlyAsnArgValAlaThrAlaSerTyrGluThrLeuTrpTyrAsnLeuProAlaL : 356 ||| !!!!.!:!|||!.! !!.! !||| !:!! !|||||| !!|||||| !| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 357 : ysLysAlaArgAspMetValLeuLeuLeuAlaIleSerLysThrProProLysLeuTh : 375 || ! !! !|||:!!:!!|||:!!:!! !! !|||!....! ! !|||!!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 376 : rAlaGlyLysIlePheAspLeuSerLeuTyrThrPheGlyValVal : 390 |||||||||||||.!! !!:!!|||:!!|||||||||.!!! !||| rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: gi|383850740|ref|XP_003700934.1| 336 390 . KQ414889.1 264723 264885 + 102 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264885 102 + . gene_id 33 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264885 102 + . alignment_id 33 ; Query gi|383850740|ref|XP_003700934.1| ; Align 264724 337 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 331 -> 387 Target range: 196633 -> 196801 332 : GluLeuLeuLeuGluGlnGlyAsnArgValAlaThrAlaSerTyrGluThrLeuTrpT : 351 :::|||!!!:!!|||:!!.!!.!.||||||!.! !.!!|||||| ! !! !|||| AspLeuPheValGluLysSerGluArgValGlyGluThrSerTyrPheMetProTrpT 196634 : gaTTTATTCGTTGAAAAGAGCGAAAGAGTAGGCGAAACGTCGTACTTCATGCCGTGGT : 196691 352 : yrAsnLeuProAlaLysLysAlaArgAspMetValLeuLeuLeuAlaIleSerLysTh : 370 ||:!!||||||! ! ! !|||!:!:!!!!: ! !:!!:!! !! !:!!!.. yrAspLeuProAspAspLeuAlaLysAsnIleArgThrIleIleLeuArgAlaSerHi 196692 : ACGATCTTCCGGACGATTTAGCCAAGAATATAAGAACGATCATACTAAGAGCCAGTCA : 196748 371 : rProProLysLeuThrAlaGlyLysIlePheAspLeuSerLeuTyrThrPhe : 387 !||| !!!..|||:!!!.!!.!|||:!:||||||||||||||| ! .!!||| sProSerSerLeuSerGlyAlaLysLeuPheAspLeuSerLeuGlnAlaPhe 196749 : TCCGTCAAGTTTGTCTGGCGCCAAGTTGTTCGATCTTTCGCTTCAAGCATTT : 196801 vulgar: gi|383850740|ref|XP_003700934.1| 331 387 . KQ414889.1 196633 196801 + 100 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 196634 196801 100 + . gene_id 34 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 196634 196801 . + . KQ414889.1 exonerate:protein2genome:local exon 196634 196801 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 196634 196801 100 + . alignment_id 34 ; Query gi|383850740|ref|XP_003700934.1| ; Align 196634 332 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1563 Query range: 0 -> 408 Target range: 284481 -> 287341 1 : MetAsnAlaLeuSerAspLeuSerLeuGluAsnAspTrpMetTyrSerIleGlnMetA : 20 :!:!.!:!!! !!!!|||! !!!!! !!!:!..|||||||||||||||:!!||||||| ValThrSerSerThrAspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetA 284482 : GTCACTTCTTCAACCGATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGA : 284539 21 : snArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuSerValThrThrPh : 39 ||||||||||||||||||||||||||||||||||||||||||||!!!|||||||||!! snArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLe 284540 : ACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTT : 284596 40 : eGlyLysLeuAsnSerIleIleLeuAlaLeuIleSerSerPheLeuIleGlyPheLeu : 58 .! !|||:!!!:!|||:!::!!|||||||||||||||!!!|||||||||||||||||| uGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeu 284597 : GGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTC : 284653 59 : LeuValProCysAlaLeuCysThrLeuLeuAspLysThrGlyAspLeuAspThrLysV : 78 ||||||||||||||||||||||||:!!||||||||||||||||||||||||||||||: LeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysI 284654 : TTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGA : 284713 79 : alLysMetIleGlyProLeuSerPheCysMetMetSerThrPheLysTyrTyrIleLe : 97 !!|||||||||||||||||||||||||||||||||:!!.!!.!!|||||||||||||| leLysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLe 284714 : TCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCT : 284770 98 : uAlaSerArgGlyGlyLysIleSerGluCysIleGluSerMetArgSerAspTrpAla : 116 | !||||||||||||||||||.!!:!!|||:!::!!..!!!:|||:!!||||||:!! uIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIleArgAlaAspTrpSer 284771 : AATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGACTGGTCT : 284827 117 : LysThrArgSerAlaGlyTyrGluGluAspArgGluIleIleIleAspCysAlaArgV : 136 |||! !||| !.!. ||||||:::|||||||||:!:! ||| !!||||||: LeuThrLeuSerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgI 284828 : CTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAA : 284887 137 : alGlyArgSerIleAlaIleIleCysAlaGlyPheMetTyrSerGlyGlyCysPheTy : 155 !!|||||||||:!:||||||.!!|||||||||||||||||||||||||||! !||||| leGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTy 284888 : TTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTA : 284944 156 : rThrAlaValMetProLeuTyrSerLysArgThrGluIleIleAspAsnGluThrVal : 174 ||||.!!||||||||||||! !!!! !|||||||||||||||||||||||||||||| rThrThrValMetProLeuCysThrValArgThrGluIleIleAspAsnGluThrVal 284945 : CACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTG : 285001 175 : ArgSerGlnThrPheProIleTyrArgArgLeuLeuAspProArgThrThrProSerV : 194 |||||||||.!!||||||||||||||| !!||||||||||||||||||!:!|||||| ArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerP 285002 : AGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGT : 285061 195 : alGluIleValGlnPheMetGlnCysLeuAlaAlaPheValMetTyrSerValThrVa : 213 !!|||||||||||||||||||||||||||||||||||||||!!:|||||||||||||| heGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrVa 285062 : TCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGT : 285118 214 : lGlySerCysSerLeuAlaAlaValPheValMetHisAlaCysGlyGlnPheArgIle : 232 ||||:!!||||||||||||||||||||||||||||||!.!|||||||||||||||||| lGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIle 285119 : TGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATA : 285175 233 : LeuValMetLysLeuGlnArgLeuValAspGlyAlaThrGlyLysAsnSerValArgT : 252 ||||||! ||||||.!.!:!||||||||||||!.!! !|||!:!!!..!!:!!!!!| LeuValThrLysLeuAspLysLeuValAspGlyValLysGlyArgLysGlyLeuSerT 285176 : CTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCA : 285235 253 : hrTyrGluHisArgLeuGlyAspIleValGluHisHisLeuGlnIleLeu{Ar} >> : 269 ||:!!|||!!.|||||||||||||||:!!||||||||||||:!!||||||{ !} hrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 285236 : CGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt.. : 285290 270 : >> Target Intron 1 >>>> {g}PheIleSerArgValGluAspLeuLeuAsn : 279 1411 bp {!}|||||||||!:!:!!|||! ||||||||| ++{y}PheIleSerGlnIleGluGlyLeuLeuAsn 285291 : .......................ag{T}TTTATATCGCAAATCGAGGGGCTCCTAAAC : 286727 280 : GluIleCysLeuValGluValValGlyCysThrMetAsnIleCysPheLeuGlyTyrT : 299 |||||||||!!!|||||||||:!!|||||||||:!!|||||||||||||||||||||| GluIleCysPheValGluValIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrT 286728 : GAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGGGATATT : 286787 300 : yrLeuLeuThr >>>> Target Intron 2 >>>> GluTrpGluGlnSerGlu : 308 ||||||||||| 80 bp |||||||||||||||||| yrLeuLeuThr++ ++GluTrpGluGlnSerGlu 286788 : ATTTACTGACGgt.........................agGAATGGGAGCAAAGTGAA : 286894 309 : AlaIleGlyThrLeuThrTyrCysLeuPhePheIleSerLeuThrPheAsnIlePheI : 328 .!!|||||||||:!!||||||||| !!!..!.:!!|||!!!|||||||||:!!|||| ThrIleGlyThrIleThrTyrCysThrLeuLeuValSerPheThrPheAsnValPheI 286895 : ACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCA : 286954 329 : leLeuCysTyrIleGlyGluIleLeuSerGluGln >>>> Target Intron 3 : 340 ||||||||||||||||||||||||||||||||||| 74 bp leLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286955 : TACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt..................... : 286992 341 : >>>> CysGlnAsnValGlyLeuSerAlaCysMetIleAspTrpTyrArgPheArgG : 357 ||| !!!.||||||||||||.!!! !||||||||||||||||||!!.! ! ++CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProG 286993 : ....agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAG : 287115 358 : lnLysLysAlaLeuGlyLeuIleLeuIleValAlaIleSerAsnSerSerThrLysLe : 376 !|||! !|||! !||||||||||||||| !!|||:!:||||||||||||! !||||| lyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLe 287116 : GAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATT : 287172 377 : uThrAlaGlyLysLeuValGluLeuSerLeuSerAsnPheCysSer >>>> Targe : 392 |||||||||||||:!!:!!!!:||||||||||||!:!||||||||| uThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSer++ 287173 : AACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt.......... : 287222 393 : t Intron 4 >>>> ValPheLysSerSerLeuAlaTyrLeuSerLeuLeuArgTh : 405 71 bp |||!!.||||||:!!!!!||||||||||||||||||||||| ++ValLeuLysSerAlaPheAlaTyrLeuSerLeuLeuArgTh 287223 : ...............agGTGTTGAAATCGGCATTCGCATATCTGAGCTTATTACGTAC : 287330 406 : rLeuThrThr : 408 |||||||||| rLeuThrThr 287331 : GCTAACCACA : 287341 vulgar: gi|383850736|ref|XP_003700932.1| 0 408 . KQ414889.1 284481 287341 + 1563 M 268 804 S 0 2 5 0 2 I 0 1407 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284482 287341 1563 + . gene_id 1 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284482 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284482 285287 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286698 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287220 287221 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 287220 287290 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287289 287290 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 287291 287341 . + . KQ414889.1 exonerate:protein2genome:local exon 287291 287341 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284482 287341 1563 + . alignment_id 1 ; Query gi|383850736|ref|XP_003700932.1| ; Align 284482 1 804 ; Align 286700 270 99 ; Align 286879 303 111 ; Align 287064 340 156 ; Align 287291 392 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1552 Query range: 0 -> 408 Target range: 278534 -> 280554 1 : MetAsnAlaLeuSerAspLeuSerLeuGluAsnAspTrpMetTyrSerIleGlnMetA : 20 :!:!.!:!!! !!!!|||! !!!!! !.!.!..|||||||||||||||:!!||||||| ValThrSerSerThrAspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetA 278535 : GTCACTTCGTCAACCGATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGA : 278592 21 : snArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuSerValThrThrPh : 39 ||||||||||||||||||||||||||||||||||||||||||||!!!|||||||||!! snArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLe 278593 : ACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTT : 278649 40 : eGlyLysLeuAsnSerIleIleLeuAlaLeuIleSerSerPheLeuIleGlyPheLeu : 58 .! !|||:!!!:!|||:!::!!|||||||||||||||!!!|||||||||||||||||| uGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeu 278650 : GGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTC : 278706 59 : LeuValProCysAlaLeuCysThrLeuLeuAspLysThrGlyAspLeuAspThrLysV : 78 ||||||||||||||||||||||||:!!||||||||||||||||||||||||||||||: LeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysI 278707 : TTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGA : 278766 79 : alLysMetIleGlyProLeuSerPheCysMetMetSerThrPheLysTyrTyrIleLe : 97 !!|||||||||||||||||||||||||||! !|||:!!|||.!!|||||||||||||| leLysMetIleGlyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLe 278767 : TCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCT : 278823 98 : uAlaSerArgGlyGlyLysIleSerGluCysIleGluSerMetArgSerAspTrpAla : 116 | !||||||||||||||||||.!!:!!|||:!:.!...!!!:|||!!!||||||:!! uMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSer 278824 : AATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCT : 278880 117 : LysThrArgSerAlaGlyTyrGluGluAspArgGluIleIleIleAspCysAlaArgV : 136 |||! !||| ! ! ||||||:::|||||||||:!:! ||| !!||||||: LeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgI 278881 : CTTACACTTTCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAA : 278940 137 : alGlyArgSerIleAlaIleIleCysAlaGlyPheMetTyrSerGlyGlyCysPheTy : 155 !!|||||||||:!:||||||.!! !!|||||||||||||||||||||||| !||||| leGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTy 278941 : TTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTA : 278997 156 : rThrAlaValMetProLeuTyrSerLysArgThrGluIleIleAspAsnGluThrVal : 174 |||||||||||||||||||!:!:!! !|||||||||||||||||||||||||||||| rThrAlaValMetProLeuPheAlaValArgThrGluIleIleAspAsnGluThrVal 278998 : CACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTG : 279054 175 : ArgSerGlnThrPheProIleTyrArgArgLeuLeuAspProArgThrThrProSerV : 194 |||||||||.!!||||||||||||||| !!||||||||||||||||||!:!|||||| ArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerP 279055 : AGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGT : 279114 195 : alGluIleValGlnPheMetGlnCysLeuAlaAlaPheValMetTyrSerValThrVa : 213 !!|||||||||||||||||||||||||||||||||||||||:!:|||||||||||||| heGluIleValGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrVa 279115 : TCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGT : 279171 214 : lGlySerCysSerLeuAlaAlaValPheValMetHisAlaCysGlyGlnPheArgIle : 232 ||||:!!||||||||| !||||||||||||||||||!.!|||||||||||||||||| lGlyAlaCysSerLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIle 279172 : TGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATA : 279228 233 : LeuValMetLysLeuGlnArgLeuValAspGlyAlaThrGlyLysAsnSerValArgT : 252 ||||||! ||||||.!.!:!|||:!!||||||!.!! !|||!:!!!.|||:!!!!!| LeuValThrLysLeuAspLysLeuIleAspGlyValLysGlyArgLysSerLeuSerT 279229 : CTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCA : 279288 253 : hrTyrGluHisArgLeuGlyAspIleValGluHisHisLeuGlnIleLeu{Ar} >> : 269 ||:!!|||!!.|||||||||||||||:!!||||||||||||:!!||||||{ !} hrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 279289 : CGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt.. : 279343 270 : >> Target Intron 1 >>>> {g}PheIleSerArgValGluAspLeuLeuAsn : 279 571 bp {!}|||||||||!:!:!!|||! ||||||||| ++{y}PheIleSerGlnIleGluGlyLeuLeuAsn 279344 : .......................ag{T}TTTATATCGCAAATCGAGGGGCTCCTGAAC : 279940 280 : GluIleCysLeuValGluValValGlyCysThrMetAsnIleCysPheLeuGlyTyrT : 299 |||||||||!!!|||||||||:!!|||||||||:!!||||||||||||||| !|||| GluIleCysPheValGluValIleGlyCysThrLeuAsnIleCysPheLeuThrTyrT 279941 : GAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGACATATT : 280000 300 : yrLeuLeuThr >>>> Target Intron 2 >>>> GluTrpGluGlnSerGlu : 308 ||||||||||| 80 bp ||||||||||||!:!!!: yrLeuLeuThr++ ++GluTrpGluGlnAsnAsp 280001 : ATTTACTCACGgt.........................agGAATGGGAGCAAAATGAC : 280107 309 : AlaIleGlyThrLeuThrTyrCysLeuPhePheIleSerLeuThrPheAsnIlePheI : 328 ||||||||||||!!!||||||! :!!|||.!!||||||||||||||||||:!!|||| AlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerLeuThrPheAsnValPheI 280108 : GCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCA : 280167 329 : leLeuCysTyrIleGlyGluIleLeuSerGluGln >>>> Target Intron 3 : 340 ||||||||||||||||||||||||||||||||||| 74 bp leLeuCysTyrIleGlyGluIleLeuSerGluGln++ 280168 : TACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt..................... : 280205 341 : >>>> CysGlnAsnValGlyLeuSerAlaCysMetIleAspTrpTyrArgPheArgG : 357 ||| !!!.||||||:!!|||.!!! !||||||||||||||||||!!.! ! ++CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProG 280206 : ....agTGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAG : 280328 358 : lnLysLysAlaLeuGlyLeuIleLeuIleValAlaIleSerAsnSerSerThrLysLe : 376 !|||||||||! !||||||||||||||| !!|||:!:||||||||||||! !||||| lyLysLysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLe 280329 : GGAAGAAAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATT : 280385 377 : uThrAlaGlyLysLeuValGluLeuSerLeuSerAsnPheCysSer >>>> Targe : 392 |||||||||||||:!!:!!!!:||||||||||||!:!||||||||| uThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSer++ 280386 : AACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt.......... : 280435 393 : t Intron 4 >>>> ValPheLysSerSerLeuAlaTyrLeuSerLeuLeuArgTh : 405 71 bp |||!!.|||!!!:!!!!!||||||||||||||||||||||| ++ValLeuLysThrAlaPheAlaTyrLeuSerLeuLeuArgTh 280436 : ...............agGTGTTAAAAACGGCATTCGCATATCTGAGCTTATTACGTAC : 280543 406 : rLeuThrThr : 408 |||||||||| rLeuThrThr 280544 : GCTTACCACA : 280554 vulgar: gi|383850736|ref|XP_003700932.1| 0 408 . KQ414889.1 278534 280554 + 1552 M 268 804 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278535 280554 1552 + . gene_id 2 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278535 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278535 279340 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280554 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280554 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278535 280554 1552 + . alignment_id 2 ; Query gi|383850736|ref|XP_003700932.1| ; Align 278535 1 804 ; Align 279913 270 99 ; Align 280092 303 111 ; Align 280277 340 156 ; Align 280504 392 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 761 Query range: 7 -> 408 Target range: 208191 -> 212084 8 : SerLeuGluAsnAspTrpMetTyrSerIleGlnMetAsnArgTrpPheLeuLysProI : 27 !:!! !:!!|||||| !! !:!!:!:!!!:::!!||| !||| |||||| !| AsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuLysIleI 208192 : AACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGAAGATAA : 208249 28 : leGlyValTrpProLeuSerLeuSerValThrThrPheGlyLysLeuAsnSerIleIl : 46 ||||| !|||||| !|||:!!..! !:!! !!!.! !!!. !.!. !|||:! leGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHisIleLe 208250 : TCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCATATTCT : 208306 47 : eLeuAlaLeuIleSerSerPheLeuIleGlyPheLeuLeuValProCysAlaLeuCys : 65 !||| !:!!:!!||| !! !|||:!!||||||:!!:!!:!!||| !!.!:!!! ! uLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGlyMetPhe 208307 : CTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATGTTC : 208363 66 : ThrLeuLeuAspLysThrGlyAspLeuAspThrLysValLysMetIleGlyProLeuS : 85 .!!:!!||| !..!! !|||!!! !! !:!!:!!|||!!: !.!! !!|||| AlaIleLeu---ValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaLeuS 208364 : GCGATCCTC---GTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTCTGA : 208420 86 : erPheCysMetMetSerThrPheLysTyrTyrIleLeuAlaSerArgGlyGlyLysIl : 104 |||||! !||||||:!! ! |||||| |||:!!.!! !|||! !||| ! || erPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAspIl 208421 : GCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGACAT : 208477 105 : eSerGluCysIleGluSerMetArgSerAspTrpAlaLysThrArgSerAlaGlyTyr : 123 | !!:!!|||:!!|||! !:!:..!:!!|||||| |||!:!!.!! !:!! eArgLysCysValGluTyrValGluAlaAspTrp---------ArgAsnValGluHis 208478 : ACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGG---------AGAAACGTGGAGCAC : 208525 124 : GluGluAspArgGluIleIleIleAspCysAlaArgValGlyArgSerIleAlaIleI : 143 ||||||||||||:!!|||!!::!:||| !|||!!! !!!.!|||!.!:!: !:!:| GluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValI 208526 : GAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGA : 208585 144 : leCysAlaGlyPheMetTyrSerGlyGlyCysPheTyrThrAlaValMetProLeu<- : 162 |||||!.!!.!|||||||||.!!||| |||||| !!.!:!!|||||| leCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuTh 208586 : TATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCAC : 208642 163 : >TyrSerLysArgThrGluIleIleAspAsnGluThrValArgSerGlnThrPhePro : 180 ..!||| !..!||| !! !||| !||| !|||!!!! !..!!:!||| rArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrPro 208643 : TCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCT : 208699 181 : IleTyrArgArgLeuLeuAspProArgThrThrProSerValGluIleValGlnPheM : 200 :!! !!:! !:!!|||||| !||| !!:!||| ! !|||||| !! ! : ValProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrV 208700 : GTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGG : 208759 201 : etGlnCysLeuAlaAlaPheValMetTyrSerValThrValGlySerCysSerLeuAl : 219 !:|||! |||:!!!.!|||||| :!!!:!:!!|||||||||:!!|||.!!||||| alGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAl 208760 : TACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGC : 208816 220 : aAlaValPheValMetHisAlaCysGlyGlnPheArgIleLeuValMetLysLeuGln : 238 ||||:!!.!!!.!||||||||||||||||||.!.!:!||||||:!! !:!!:!! aAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGlu 208817 : CGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAG : 208873 239 : ArgLeuValAspGlyAlaThrGlyLysAsnSerValArgThrTyrGluHisArgLeuG : 258 !:!|||||||||||| ! :!!:!!..!! !!:!!.!! !!:!!.||||||! LysLeuValAspGlyArg------GluAspGluGluLysAsnLeuAspGlnArgLeuA 208874 : AAGTTGGTCGATGGACGG------GAGGACGAGGAGAAGAATTTGGATCAGAGGTTGG : 208927 259 : lyAspIleValGluHisHisLeuGlnIleLeu{Ar} >>>> Target Intron 1 : 269 .!:!!|||||||||!!.|||:!!!:!:!::!!{!.} 1536 bp laAsnIleValGluGlnHisValArgValIle{As}++ 208928 : CTAATATCGTGGAGCAGCATGTTCGAGTGATC{AA}gt.................... : 208964 270 : >>>> {g}PheIleSerArgValGluAspLeuLeuAsnGluIleCysLeuValGlu : 285 {!}||||||:!!! !..!|||:!!||||||:!!||||||! |||:!!||| ++{n}PheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGlu 208965 : .....ag{T}TTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAA : 210544 286 : ValValGlyCysThrMetAsnIleCysPheLeuGlyTyrTyrLeuLeuThr >>>> : 303 :!!||||||||||||:!!|||!!:|||||||||||||||||| !:!!! ! MetValGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210545 : ATGGTGGGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt..... : 210600 304 : Target Intron 2 >>>> GluTrpGluGlnSerGluAlaIleGlyThrLeuThr : 314 66 bp ||||||!!:...!.!!!: !!|||.!!!:!|||||| ++GluTrpAspSerLysAspProIleSerSerLeuThr 210601 : ....................agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACG : 210697 315 : TyrCysLeuPhePheIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyG : 334 ||| :!!.!!.!!! !|||:!!||||||||||||||||||!!!||||||||||||| TyrIleValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyG 210698 : TACATAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTG : 210757 335 : luIleLeuSerGluGln >>>> Target Intron 3 >>>> CysGlnAsnVal : 343 ||:!:|||:!!|||||| 999 bp !!!.||| luValLeuAlaGluGln++ ++ThrValLysVal 210758 : AAGTGTTGGCTGAACAggt.........................agACAGTAAAAGTT : 211783 344 : GlyLeuSerAlaCysMetIleAspTrpTyrArgPheArgGlnLysLysAlaLeuGlyL : 363 ||| !!.!:!!! !||||||||||||||||||.!.! ! !||||||!.!|||! !: GlyGluLysSerTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValV 211784 : GGAGAAAAGTCTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCG : 211843 364 : euIleLeuIleValAlaIleSerAsnSerSerThrLysLeuThrAlaGlyLysLeuVa : 382 !! !|||!!::!!:!!!!:|||:!!|||!!!||||||:!!|||||||||!!.|||:! alProLeuMetIleSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIl 211844 : TACCCTTGATGATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCAT : 211900 383 : lGluLeuSerLeuSerAsnPheCysSer >>>> Target Intron 4 >>>> V : 392 !! ||||||:!!|||!:!||| !!..! 104 bp | eValLeuSerIleSerSerPheGlyAsp++ ++V 211901 : CGTTCTTTCAATCAGTAGTTTCGGTGACgt.........................agG : 212034 393 : alPheLysSerSerLeuAlaTyrLeuSerLeuLeuArgThrLeuThrThr : 408 ||.!!|||!!!|||:!!.!!||||||!:!:!!|||||||||!!!|||||| alIleLysThrSerValThrTyrLeuAsnMetLeuArgThrPheThrThr 212035 : TTATCAAGACTTCGGTAACATACTTGAACATGCTACGAACATTCACAACC : 212084 vulgar: gi|383850736|ref|XP_003700932.1| 7 408 . KQ414889.1 208191 212084 + 761 M 61 183 G 1 0 M 46 138 G 3 0 M 43 129 G 0 3 M 83 249 G 2 0 M 22 66 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 995 3 0 2 M 52 156 5 0 2 I 0 100 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208192 212084 761 + . gene_id 3 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208192 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208192 208961 . + . insertions 3 ; deletions 6 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211929 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 211930 211931 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 211930 212033 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 212032 212033 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 212034 212084 . + . KQ414889.1 exonerate:protein2genome:local exon 212034 212084 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208192 212084 761 + . alignment_id 3 ; Query gi|383850736|ref|XP_003700932.1| ; Align 208192 8 183 ; Align 208375 70 138 ; Align 208513 119 129 ; Align 208645 162 249 ; Align 208894 247 66 ; Align 210499 270 99 ; Align 210664 303 111 ; Align 211774 340 156 ; Align 212034 392 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 652 Query range: 14 -> 407 Target range: 256652 -> 258738 15 : TyrSerIleGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL : 34 ||||||:!!|||:!!|||||||||||||||||||||||||||!.!||||||! !|||! TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerS 256653 : TACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGT : 256710 35 : euSerValThrThrPheGlyLysLeuAsnSerIleIleLeuAlaLeuIleSerSerPh : 53 !|||..!||||||.!!! !::! ! !||||||:!!||| !:!!:!!!!!! ! erSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGl 256711 : CGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGG : 256767 54 : eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrLeuLeuAspLysThrGly : 72 !! !||| !||| !|||:!!|||||| !||| !..!!!!|||||| !! ! ySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAsp---AspAsp 256768 : TTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGAC---GACGAC : 256821 73 : AspLeuAspThrLysValLysMetIleGlyProLeuSerPheCysMetMetSerThrP : 92 ..!!!! ! ||||||||| ...||||||:!!||| !!! !!:!!:||| ! SerPheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysA 256822 : AGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTG : 256881 93 : heLysTyrTyrIleLeuAlaSerArgGlyGlyLysIleSerGluCysIleGluSerMe : 111 !!!.||| :!:||| !! !!:!||| ! ! ||| !! ! |||:!!||| !!! laAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIl 256882 : CCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATAT : 256938 112 : tArgSerAspTrpAlaLysThrArgSerAlaGlyTyrGluGluAspArgGluIleIle : 130 :..!!!!|||||| !! !..!|||!!! |||:!!|||!:!:!!:!:!!: eGluThrAspTrpArgMetValArgArg---------GluLysAspGlnGlnValMet 256939 : AGAAACGGATTGGAGAATGGTGAGGAGG---------GAGAAGGATCAACAAGTGATG : 256986 131 : IleAspCysAlaArgValGlyArgSerIleAlaIleIleCysAlaGlyPheMetTyrS : 150 !!: ! !|||||| !!||||||! !:!:|||! !.!!||||||!.!.!!||| ! | MetLysAsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnS 256987 : ATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAA : 257046 151 : erGlyGlyCysPheTyrThrAlaValMetProLeuTyrSerLysArgThrGluIleIl : 169 ||||| ::: ..! ! ! !!||| !!!!!:!!! !! !.!.:!: erGlyValPheCysPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGl 257047 : GCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGG : 257103 170 : eAspAsnGluThr<->ValArgSerGlnThrPheProIleTyrArgArgLeuLeuAsp : 187 !:!!.!. !||| |||||| !! ! !! !! !!:!:|||!:!!:!||||||:!! yAsnGluThrThrIleValArgValLeuProValThrValTyrLysLysLeuLeuAsn 257104 : AAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAAC : 257160 188 : ProArgThrThrProSerValGluIleValGlnPheMetGlnCysLeuAlaAlaPheV : 207 ! ! !!:!|||!!! !||||||||| ||||||||| !! !:!!:!!.!!: ValAspGlnSerProThrAsnGluIleValValPheMetGlnThrTrpSerSerIleI 257161 : GTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTA : 257220 208 : alMetTyrSerValThrValGlySerCysSerLeuAlaAlaValPheValMetHisAl : 226 !! ! !!!! !||||||.!!! !! !||||||||||||||||||!.!! ||||| leAlaThrThrSerThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAl 257221 : TAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGC : 257277 227 : aCysGlyGlnPheArgIleLeuValMetLysLeuGlnArgLeuValAspGlyAlaThr : 245 |! !||||||!!.! !:!:|||:!! ! !:!! !..!!!!|||:!!! !:!!! ! aTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGluPheValAsnGluSerArg 257278 : GTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGG : 257334 246 : GlyLysAsnSerValArgThrTyrGluHisArgLeuGlyAspIleValGluHisHisL : 265 ..!:::......... ::!:!! !:!:!!|||! |||||||||||||||| AsnArgGluLysThrPheProPheLys---GlnIleGlyValIleValGluHisHisL 257335 : AATCGggagaaaacgtttcctttCAAG---CAAATAGGCGTGATTGTGGAGCATCATT : 257391 266 : euGlnIleLeu{Ar} >>>> Target Intron 1 >>>> {g}PheIleSerAr : 273 ||::!:!:|||{!!} 76 bp {!}||||||||| euArgValLeu{Se}++ ++{r}PheIleSerTy 257392 : TAAGAGTGCTG{AG}gt.........................ag{T}TTCATATCATA : 257491 274 : gValGluAspLeuLeuAsnGluIleCysLeuValGluValValGlyCysThrMetAsn : 292 !:!!|||!!::!!:!!|||..!||||||!!!:!!|||:!! !! !!||||||:!! ! rIleGluGluValMetAsnArgIleCysPheLeuGluLeuPheArgCysThrLeuAla 257492 : TATCGAGGAAGTGATGAACCGAATATGTTTTTTAGAGTTGTTTAGATGCACGCTGGCT : 257548 293 : IleCysPheLeuGlyTyrTyrLeuLeuThr >>>> Target Intron 2 >>>> : 303 ||||||.!.||||||||||||:!!|||.!! 684 bp IleCysMetLeuGlyTyrTyrIleLeuAla++ + 257549 : ATATGCATGCTGGGATACTACATTCTTGCGgt.........................a : 258263 304 : GluTrpGluGlnSerGluAlaIleGlyThrLeuThrTyrCysLeuPhePheIleSer : 321 ||||||... !...::: ... :::|||! !:!!.!..!!|||||| +GluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheMetIleLeuIleSer 258264 : ggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTATGATACTCATATca : 258319 322 : LeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuSerGluGln >> : 340 |||:::||||||||||||::::::|||||||||||||||||||||!!!|||||| LeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluGln++ 258320 : ctttctttcaatatttttgtaatatgttACATAGGTGAAATATTAACAGAACAGgt.. : 258378 341 : >> Target Intron 3 >>>> CysGlnAsnValGlyLeuSerAlaCysMetIle : 350 90 bp |||:!!!!.|||||| ! !!.!! !|||! ! ++CysLysLysValGlyAspValValTyrMetThr 258379 : .......................agTGCAAGAAAGTTGGCGACGTGGTTTATATGACA : 258496 351 : AspTrpTyrArgPheArgGlnLysLysAlaLeuGlyLeuIleLeuIleValAlaIleS : 370 ||||||||| !.!.! !.!.|||!:! !|||! !|||||||||:!!:!!||| !| AspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLeuValIleAlaArgS 258497 : GACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTTGGTAATCGCACGAT : 258556 371 : erAsnSerSerThrLysLeuThrAlaGlyLysLeuValGluLeuSerLeuSerAsnPh : 389 ||!:! ! !..!:!!:!!||||||||||||... ...::!|||:!!! !!..|| erSerValValValGlnIleThrAlaGlyLysPhePheHisMetSerIleTyrThrPh 258557 : CGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatGTCCATTTACACATT : 258613 390 : eCysSer >>>> Target Intron 4 >>>> ValPheLysSerSerLeuAlaT : 399 | !!..! 69 bp |||.!.|||!!!|||!!!|||| eSerAsp++ ++ValIleLysThrSerPheAlaT 258614 : CAGCGATgt.........................agGTAATAAAAACCTCTTTCGCGT : 258712 400 : yrLeuSerLeuLeuArgThrLeuThr : 407 |||||!:!||||||||| !:!!:!! yrLeuAsnLeuLeuArgGlnValSer 258713 : ATTTGAATTTACTGCGTCAAGTATCG : 258738 vulgar: gi|383850736|ref|XP_003700932.1| 14 407 . KQ414889.1 256652 258738 + 652 M 55 165 G 1 0 M 50 150 G 3 0 M 50 150 G 0 3 M 81 243 G 1 0 M 13 39 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256653 258738 652 + . gene_id 4 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256653 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256653 257404 . + . insertions 3 ; deletions 5 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256653 258738 652 + . alignment_id 4 ; Query gi|383850736|ref|XP_003700932.1| ; Align 256653 15 165 ; Align 256818 71 150 ; Align 256968 124 150 ; Align 257121 174 243 ; Align 257364 256 39 ; Align 257482 270 99 ; Align 258265 303 111 ; Align 258466 340 156 ; Align 258691 392 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 614 Query range: 6 -> 392 Target range: 232435 -> 235147 7 : LeuSerLeuGluAsnAspTrpMetTyrSerIleGlnMetAsnArgTrpPheLeuLysP : 26 |||!:! ! !...|||!:: !||||||||||||:!!|||||||||||||||! !| LeuAsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrP 232436 : TTGAACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACAC : 232493 27 : roIleGlyValTrpProLeuSerLeuSerValThrThrPheGlyLysLeuAsnSerIl : 45 ||!!:|||!.!||||||! ! ! !..!..!:!!! ! ! !:!!||| !:!!! roMetGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLy 232494 : CGATGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAA : 232550 46 : eIleLeuAlaLeuIleSerSerPheLeuIleGlyPheLeuLeuValProCysAlaLeu : 64 !:!:||| !|||! !!!! !! !|||!!: !! !! !:!!||||||||| !||| sLeuLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValProCysIleLeu 232551 : ACTGTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTG : 232607 65 : CysThrLeuLeuAspLysThrGlyAspLeuAspThrLysValLysMetIleGlyProL : 84 ! !! !|||!!!!!: ! ||| ..!|||!!: !!:!:!!||| |||||||||: PheIleLeuPheGluAspThr---SerLeuGluGluArgMetLysSerIleGlyProM 232608 : TTCATCCTGTTCGAAGACACG---AGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTA : 232664 85 : euSerPheCysMetMetSerThrPheLysTyrTyrIleLeuAlaSerArgGlyGlyLy : 103 !!||| !! !:!!|||.!! !!!.!!.|||! ! !||| !:!!!:!!.!..! ! etSerHisPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAs 232665 : TGAGTCACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGA : 232721 104 : sIleSerGluCysIleGluSerMetArgSerAspTrpAlaLysThrArgSerAlaGly : 122 ||| ! ! |||:!:|||..!:!!!:!..!|||||| !!!...!!:!!.! !!! ! pIleLeuTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLysProVal 232722 : CATCCTCTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTC : 232778 123 : TyrGluGluAspArgGluIleIleIleAspCysAlaArgValGlyArgSerIleAlaI : 142 :!! |||!!::!:!!::!: ! !|||!:!:!!||||||||||||||| His---------ArgAspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaC 232779 : CAT---------CGTGATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTT : 232829 143 : leIleCysAlaGlyPheMetTyrSerGlyGlyCysPheTyrThrAlaValMetProLe : 161 !|||..!||| !! !|||:!!!!!|||! ! !!! ! !! ! !|||! !|| ysIleAlaAlaPheCysMetHisThrGlyValGlySerAspGluIleValThrGlyLe 232830 : GCATCGCTGCGTTTTGCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACT : 232886 162 : uTyrSerLysArgThrGluIleIleAspAsnGluThrValArgSerGlnThrPhePro : 180 | !!! !!!!||| !:!:! ||||||!:! ! !! ! ! !!!!.||| u---ArgMetSerThrPheTyrValGlyAsnGluSerTyrSerMetTyrProLeuPro 232887 : T---CGTATGAGCACGTTCTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCT : 232940 181 : <-><->IleTyrArgArgLeuLeuAspProArgThrThrProSerValGluIleValG : 198 .!!|||! !!:!|||:!!||| !!||| !!:!|||!!! !||||||:!! CysThrPheTyrThrLysLeuMetAspThrArgPheSerProThrAsnGluIleMetP 232941 : TGCACGTTCTACACGAAGCTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGT : 233000 199 : lnPheMetGlnCysLeuAlaAlaPheValMetTyrSerValThrValGlySerCysSe : 217 !!:!:|||||||||:!!!.!|||:!!:!! !!|||||||||||||||:!!|||.! heValLeuGlnCysLeuSerGlyPheIleValAsnSerValThrValGlyAlaCysGl 233001 : TCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGG : 233057 218 : rLeuAlaAlaValPheValMetHisAlaCysGlyGlnPheArgIleLeuValMetLys : 236 !|||!.!||||||.!.!.!||||||||||||||||||.!.!.!:!::!!:!! !||| yLeuGlyAlaValLeuAlaMetHisAlaCysGlyGlnLeuAsnValValMetSerLys 233058 : TTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAA : 233114 237 : LeuGlnArgLeuValAspGlyAlaThrGlyLysAsnSerValArgThrTyrGluHisA : 256 |||.!. !||||||||| |||! !|||:!!.!...! |||..! :!!...! LeuAspAspLeuValAsp---AlaLysGlyGlnGluGlu---ArgValAlaGlnArgL 233115 : TTGGACGATTTGGTGGAC---GCGAAAGGGCAGGAGGAG---AGAGTCGCGCAGAGGA : 233168 257 : rgLeuGlyAspIleValGluHisHisLeuGlnIleLeuArgPheIleSer >>>> T : 273 :!|||||| !||||||||||||||||||!::! !||||||!:!:!:||| ysLeuGlyPheIleValGluHisHisLeuArgThrLeuArgTyrLeuSer++ 233169 : AGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTAAGGTATTTGTCTgt...... : 233221 274 : arget Intron 1 >>>> ArgValGluAspLeuLeuAsnGluIleCysLeuValG : 285 1315 bp !.!:!!|||:!!:!!:!!||| !||||||||||||| -+AsnIleGluAsnValMetAsnLeuIleCysLeuValG 233222 : ...................ggAATATAGAGAACGTTATGAACCTAATATGCCTGGTTG : 234570 286 : luValValGlyCysThrMetAsnIleCysPheLeuGlyTyrTyrLeuLeuThr >>> : 303 ||:!!||||||||||||:!!|||!!:|||.!.|||! !||||||||||||||| luLeuValGlyCysThrLeuAsnMetCysMetLeuGluTyrTyrLeuLeuThr++ 234571 : AGTTGGTAGGATGCACGTTGAACATGTGCATGCTCGAGTATTATTTACTCACGgt... : 234626 304 : > Target Intron 2 >>>> GluTrpGluGlnSerGluAlaIleGlyThrLeuT : 314 189 bp ||| ...:::...::: !: ++GluLysSerLysGluLys---------LeuAlaS 234627 : ......................agGAAAAgtcgaaggaaaaa---------ttagCTT : 234837 315 : hrTyrCysLeuPhePheIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGl : 333 !!||| !:!! ! !:!:!:|||:!!||||||||||||||||||...||||||||||| erTyrValIleValTyrValSerMetThrPheAsnIlePheIlePheCysTyrIleGl 234838 : CATACGTCATCGTGTACGTGTCCATGACATTtaatatattcatattttgttACATCGG : 234894 334 : yGluIleLeuSerGluGln >>>> Target Intron 3 >>>> CysGlnAsnV : 343 ||||! |||!!!|||||| 74 bp ||| !!.| yGluThrLeuThrGluGln++ ++CysThrLysV 234895 : AGAGACGCTTACAGAGCAGgt.........................agTGTACCAAAG : 234998 344 : alGlyLeuSerAlaCysMetIleAspTrpTyrArgPheArgGlnLysLysAlaLeuGl : 362 ||||| !!.!!.!! !|||! !!!:|||||||||!!.! !!!.|||! |||||||| alGlyGluLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGl 234999 : TCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGG : 235055 363 : yLeuIleLeuIleValAlaIleSerAsnSerSerThrLysLeuThrAlaGlyLysLeu : 381 ||||:!!:!!|||:!!:!!! |||!:!! ! !! !|||:!!||||||||||||!!! yLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPhe 235056 : TTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCACCGCTGGAAAATTC : 235112 382 : ValGluLeuSerLeuSerAsnPheCysSerVal : 392 :!!:!!:!!|||:!!:!!!..||| !!..!||| LeuGlnMetSerValAlaThrPheGlyAspVal 235113 : CTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: gi|383850736|ref|XP_003700932.1| 6 392 . KQ414889.1 232435 235147 + 614 M 65 195 G 1 0 M 51 153 G 3 0 M 35 105 G 1 0 M 18 54 G 0 6 M 62 186 G 1 0 M 6 18 G 1 0 M 22 66 5 0 2 I 0 1311 3 0 2 M 30 90 5 0 2 I 0 185 3 0 2 M 6 18 G 3 0 M 28 84 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232436 235147 614 + . gene_id 5 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232436 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232436 233218 . + . insertions 6 ; deletions 7 KQ414889.1 exonerate:protein2genome:local splice5 233219 233220 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233219 234533 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234532 234533 . + . intron_id 0 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 234534 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234534 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232436 235147 614 + . alignment_id 5 ; Query gi|383850736|ref|XP_003700932.1| ; Align 232436 7 195 ; Align 232631 73 153 ; Align 232784 127 105 ; Align 232889 163 54 ; Align 232949 181 186 ; Align 233135 244 18 ; Align 233153 251 66 ; Align 234534 273 90 ; Align 234813 303 18 ; Align 234831 312 84 ; Align 234989 340 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 565 Query range: 14 -> 404 Target range: 262849 -> 265001 15 : TyrSerIleGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL : 34 ||||||:!:|||!!:|||||||||.!.|||||||||||||||!.!|||||||||||| TyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerA 262850 : TACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCG : 262907 35 : euSerValThrThrPheGlyLysLeuAsnSerIleIleLeuAlaLeuIleSerSerPh : 53 !|||:!!:!!! !.!.! !::!:!!! !!!!.!!:!!||| !:!!:!!!!!! !! laSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCy 262908 : CCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTG : 262964 54 : eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrLeuLeuAspLysThrGly : 72 !|||||| !! ! !:!!:!!|||! ! !||| !! !:!!|||!!: .!!! ! sLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGlu---AlaGlu 262965 : TCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAA---GCCGAG : 263018 73 : AspLeuAspThrLysValLysMetIleGlyProLeuSerPheCysMetMetSerThrP : 92 :!!!!! !!! !|||:!!:!!:!::!!|||||||||.!! !! .!.:!:.!!! !. AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 93 : heLysTyrTyrIleLeuAlaSerArgGlyGlyLysIleSerGluCysIleGluSerMe : 111 !!!!.||| ! ||| ! !!.!.!! ! ! |||..!! |||:!::!! !:! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 112 : tArgSerAspTrpAlaLysThrArgSerAlaGlyTyrGluGluAspArgGluIleIle : 130 !!:!..!||||||..!! ..!! !!!! ! ||||||!:!...|||!!: lGlnGluAspTrpCysIleValThrArgLeu---------GluAspGlnArgIleMet 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTG---------GAGGATCAACGTATCATG : 263183 131 : IleAspCysAlaArgValGlyArgSerIleAlaIleIleCysAlaGlyPheMetTyrS : 150 :!: ! !|||!:! !||||||! !:!:||| ! !|||||| !|||||| ! ! LeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnT 263184 : CTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAA : 263243 151 : erGlyGlyCysPheTyrThrAlaValMetProLeuTyrSerLysArgThrGluIle<- : 169 !!.!! ! ! ! ! ! !|||! !!!!! !!!!:!! !! !||| ! hrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGl 263244 : CGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGG : 263300 170 : >IleAspAsnGluThrValArgSerGlnThrPheProIleTyrArgArgLeuLeuAsp : 187 ! !!!:!.!..!! !:!!|||! !! ! !!! !|||:!:|||!:!..!:!!:!! yAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLysGluIleIlePro 263301 : TAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCA : 263357 188 : ProArgThrThrProSerValGluIleValGlnPheMetGlnCysLeuAlaAlaPheV : 207 ! !|||!.!|||!!! !|||||| !!! !! !|||! !|||:!!!.!|||: ValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheI 263358 : GTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCA : 263417 208 : alMetTyrSerValThrValGlySerCysSerLeuAlaAlaValPheValMetHisAl : 226 !!:!: !:!!..!|||||||||:!!! !.!!:!!.!!|||||||||!.! ||||| leValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAl 263418 : TCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGC : 263474 227 : aCysGlyGlnPheArgIleLeuValMetLysLeuGlnArgLeuValAspGlyAlaThr : 245 ||||||||||!!.!.!:!:|||:!! !:!! !..!!!!|||:!! !:!!! ! aCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArg 263475 : TTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGG : 263531 246 : GlyLysAsnSerValArgThrTyrGluHisArgLeuGlyAspIleValGluHisHisL : 265 ! !:!!|||!.! !.! !||| !..!:!!|||! |||||||||||||||| AspGluAsnLys---AsnLeuTyrPheThrGluIleGlyValIleValGluHisHisL 263532 : GATGAGAATAAG---AATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATC : 263588 266 : euGlnIleLeu{Ar} >>>> Target Intron 1 >>>> {g}PheIleSerAr : 273 ||::!:!!|||{!!} 72 bp {!}||||||..!|| euArgValLeu{Se}++ ++{r}PheIleAspAr 263589 : TGAGAGTTCTG{AG}gt.........................ag{T}TTCATAGATCG : 263684 274 : gValGluAspLeuLeuAsnGluIleCysLeuValGluValValGlyCysThrMetAsn : 292 |:!!:!!:!!:!!:!!!:! !||||||!!!||||||:!! !! !..!|||:!!:!! gIleLysAsnValMetSerThrIleCysPheValGluLeuPheLysAlaThrLeuAsp 263685 : TATTAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCAAGGCTACGCTGGAT : 263741 293 : IleCysPheLeuGlyTyrTyrLeuLeuThr >>>> Target Intron 2 >>>> : 303 ||||||.!.||||||||||||:!!|||||| 764 bp IleCysMetLeuGlyTyrTyrIleLeuThr++ + 263742 : ATATGCATGCTAGGTTACTACATACTTACGgt.........................a : 264536 304 : GluTrpGluGlnSerGluAlaIleGlyThrLeuThrTyrCysLeuPhePheIleSer : 321 |||||||||... ::: ... !||||||! !:!!.!..!.|||||| +GluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSer 264537 : gGAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATACTGATATCA : 264592 322 : LeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuSerGluGln >> : 340 :!! ! !|||||||||:!!:!!|||||||||||||||||||||!!!|||||| MetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGln++ 264593 : ATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcaggt.. : 264651 341 : >> Target Intron 3 >>>> CysGlnAsnValGlyLeuSerAlaCysMetIle : 350 78 bp |||:!!!!.|||||| ! !!.!! !||| ++CysLysLysValGlyGluValValTyrMetSer 264652 : .......................agTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCG : 264757 351 : AspTrpTyrArgPheArgGlnLysLysAlaLeuGlyLeuIleLeuIleValAlaIleS : 370 :!!|||||| !!!.! ! ! ||| ! !|||! !||||||||||||:!! !! !| AsnTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLeuIleIleLeuArgS 264758 : AATTGGTATTACTTACCCTACAAAGATATCCTTGATCTGATTCTCATCATTTTAAGAT : 264817 371 : erAsnSerSerThrLysLeuThrAlaGlyLysLeuValGluLeuSerLeuSerAsnPh : 389 ||!:! ! ! !|||!!!||||||||||||:!!:!!.!.:!!|||:!!! !!..|| erSerValValPheLysPheThrAlaGlyLysIleLeuHisMetSerMetTyrThrPh 264818 : CCAGCGTGGTGTTTAAATTCACCGCTGGAAAGATACTTCACATGTCCATGTACACATT : 264874 390 : eCysSer >>>> Target Intron 4 >>>> ValPheLysSerSerLeuAlaT : 399 | !!..! 80 bp |||.!!|||||||||!!!.!!| eSerAsp++ ++ValIleLysSerSerPheThrT 264875 : CAGTGACgt.........................aggTAATCAAATCCTCTTTCACGT : 264984 400 : yrLeuSerLeuLeuArg : 404 |||||!:!||||||||| yrLeuAsnLeuLeuArg 264985 : ACTTAAACTTACTTCGC : 265001 vulgar: gi|383850736|ref|XP_003700932.1| 14 404 . KQ414889.1 262849 265001 + 565 M 55 165 G 1 0 M 51 153 G 3 0 M 44 132 G 0 3 M 81 243 G 1 0 M 18 54 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 33 99 5 0 2 I 0 760 3 0 2 M 37 111 5 0 2 I 0 74 3 0 2 M 52 156 5 0 2 I 0 76 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262850 265001 565 + . gene_id 6 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262850 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262850 263601 . + . insertions 3 ; deletions 5 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 263673 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263672 263673 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 263674 263773 . + . KQ414889.1 exonerate:protein2genome:local exon 263674 263773 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263774 263775 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263774 264537 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264536 264537 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264538 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264726 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 3 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265001 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265001 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262850 265001 565 + . alignment_id 6 ; Query gi|383850736|ref|XP_003700932.1| ; Align 262850 15 165 ; Align 263015 71 153 ; Align 263168 125 132 ; Align 263303 169 243 ; Align 263546 251 54 ; Align 263675 270 99 ; Align 264538 303 111 ; Align 264727 340 156 ; Align 264963 392 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 461 Query range: 14 -> 302 Target range: 266637 -> 267558 15 : TyrSerIleGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL : 34 ||||||:!:|||:!!|||||||||||||||||||||||||||!.!||||||! !! !! TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuS 266638 : TACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGT : 266695 35 : euSerValThrThrPheGlyLysLeuAsnSerIleIleLeuAlaLeuIleSerSerPh : 53 ! !..!:!!! !.!!! !::!:!! !||| ! !||| !:!!|||!!!! !! erLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCy 266696 : CACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTG : 266752 54 : eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrLeuLeuAspLysThrGly : 72 !! !||| !||| !:!!:!!|||||| !!!! ! !:!!|||!!: ! ! sSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu--- 266753 : CTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG--- : 266809 73 : AspLeuAspThrLysValLysMetIleGlyProLeuSerPheCysMetMetSerThrP : 92 ..!:!! !||||||||||||:!!.!!|||||||||||| !!! .!.:!:.!! !. SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266810 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 93 : heLysTyrTyrIleLeuAlaSerArgGlyGlyLysIleSerGluCysIleGluSerMe : 111 !!!!.||| !! !||| ! !|||.!! !:!!||| !!! |||:!!||| !|| leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 112 : tArgSerAspTrpAlaLysThrArgSerAlaGlyTyrGluGluAspArgGluIleIle : 130 |!:!!!!|||||| |||! !!.! ! !||||||!:!:!!:!:!!: tGlnThrAspTrp---------ArgIleValThrArgProGluAspLysGlnValMet 266924 : GCAAACAGATTGG---------AGGATCGTGACCAGACCGGAGGACAAGCAGGTGATG : 266971 131 : IleAspCysAlaArgValGlyArgSerIleAlaIleIleCysAlaGlyPheMetTyrS : 150 :!: ! !||||||:!!||||||! !|||||||||.!!||||||!.!|||||| ! ! LeuLysAsnAlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnC 266972 : TTGAAGAACGCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAAT : 267031 151 : erGlyGlyCysPheTyrThrAlaValMetProLeuTyrSerLysArgThrGluIle<- : 169 !!|||! ! ! !||| !!.!:!!! ! !!!!! !! !:!!! !..!|||:!! ysGlyValLeuGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGl 267032 : GCGGTGTTCTCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGG : 267088 170 : >IleAspAsnGluThrValArgSerGlnThrPheProIleTyrArgArgLeuLeuAsp : 187 ! !!!:!.!..!! !|||!.! ! ! !!! ! !!:!!|||!:!!:!:!!:!!! yAsnGluThrArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAla 267089 : TAACGAGACTAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCA : 267145 188 : ProArgThrThrProSerValGluIleValGlnPheMetGlnCysLeuAlaAlaPheV : 207 ! !|||!:!|||!!! !|||||||||! !! |||! !:!!:!!!.!|||: ValAspThrSerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheI 267146 : GTTGATACCAGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCA : 267205 208 : alMetTyrSerValThrValGlySerCysSerLeuAlaAlaValPheValMetHisAl : 226 !!:!! !!||| !..!||||||:!!! !||||||||||||||||||!.! ||||| leValAsnSerSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAl 267206 : TCGTGAATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGC : 267262 227 : aCysGlyGlnPheArgIleLeuValMetLysLeuGlnArgLeuValAspGlyAlaThr : 245 ||||||||||.!.!!!:!:|||:!!||| !:!!:!!..!!!!|||:!! !!:!!! ! aCysGlyGlnLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArg 267263 : GTGCGGACAGCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGA : 267319 246 : GlyLysAsnSerValArgThrTyrGluHisArgLeuGlyAspIleValGluHisHisL : 265 ! !!..|||!.! ! ! !!:!!!: !:!:!!|||! :!!||||||||||||| AspSerAsnLysAsnValCysPheAsp---LysIleGlyValValValGluHisHisL 267320 : GATAGCAATAAGAACGTTTGCTTCGAT---AAGATTGGCGTGGTCGTTGAACATCATC : 267376 266 : euGlnIleLeu{Ar} >>>> Target Intron 1 >>>> {g}PheIleSerAr : 273 ||::!:!!|||{!!} 69 bp {!}||||||:!!|| euArgValLeu{Se}++ ++{r}PheIleAlaAr 267377 : TGAGAGTTTTG{AG}gt.........................ag{C}TTCATAGCACG : 267469 274 : gValGluAspLeuLeuAsnGluIleCysLeuValGluValValGlyCysThrMetAsn : 292 |:!!|||..!:!!:!!!:!|||||||||!!!:!!|||:!! !! !|||||||||:!! gIleGluSerValMetSerGluIleCysPheMetGluLeuPheLysCysThrMetAsp 267470 : TATCGAAAGTGTAATGAGCGAAATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGAT : 267526 293 : IleCysPheLeuGlyTyrTyrLeuLeuThr : 302 |||||| ! |||.!!||||||:!!|||||| IleCysValLeuSerTyrTyrIleLeuThr 267527 : ATATGCGTGCTTAGCTATTATATCCTTACG : 267558 vulgar: gi|383850736|ref|XP_003700932.1| 14 302 . KQ414889.1 266637 267558 + 461 M 57 171 G 1 0 M 43 129 G 3 0 M 50 150 G 0 3 M 86 258 G 1 0 M 13 39 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266638 267558 461 + . gene_id 7 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266638 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266638 267389 . + . insertions 3 ; deletions 5 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267558 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267558 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266638 267558 461 + . alignment_id 7 ; Query gi|383850736|ref|XP_003700932.1| ; Align 266638 15 171 ; Align 266809 73 129 ; Align 266938 119 150 ; Align 267091 169 258 ; Align 267349 256 39 ; Align 267460 270 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 444 Query range: 14 -> 343 Target range: 259772 -> 261856 15 : TyrSerIleGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL : 34 ||||||:!!|||.!.|||||||||||||||||||||||||||!.!||||||! !|||! TyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerS 259773 : TATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCAT : 259830 35 : euSerValThrThrPheGlyLysLeuAsnSerIleIleLeuAlaLeuIleSerSerPh : 53 !|||..!|||! !.!!! !|||:!!! !|||:!!|||||| !!!!|||!!!! ! erSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSe 259831 : CCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAG : 259887 54 : eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrLeuLeuAspLysThrGly : 72 ! !||| ! !! !|||:!!||||||!.!||| !! !||||||!!:||| ! rThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGlu--- 259888 : TACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAG--- : 259944 73 : AspLeuAspThrLysValLysMetIleGlyProLeuSerPheCysMetMetSerThrP : 92 ..!||| !!! !|||..!|||:!!:!!|||||||||!!! !!! .!.:!:.!! !. SerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysI 259945 : AGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTA : 260001 93 : heLysTyrTyrIleLeuAlaSerArgGlyGlyLysIleSerGluCysIleGluSerMe : 111 !!!!.||| ! ||| !! !|||||| !! ! ||| !...|||:!:||| !:! leAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisVa 260002 : TTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGT : 260058 112 : tArgSerAspTrpAlaLysThrArgSerAlaGlyTyrGluGluAspArgGluIleIle : 130 !..!!:!|||||| |||! ! ! ! |||:!!|||!:!.!.:!:!!: lGluAsnAspTrp---------ArgIleIleThrArgGluLysAspGlnAsnValMet 260059 : GGAGAACGATTGG---------AGAATTATAACGAGGGAGAAGGATCAGAACGTGATG : 260106 131 : IleAspCysAlaArgValGlyArgSerIleAlaIleIleCysAlaGlyPheMetTyrS : 150 :!: ! !|||!:! !!||||||! !:!!||| ! !||||||!.!|||:!! ! . LeuArgTyrAlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnG 260107 : TTGAGATACGCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGG : 260166 151 : erGlyGlyCysPheTyrThrAlaValMetProLeuTyrSerLysArgThrGluIle<- : 169 !!|||! ! ! !!:! ! !|||! ! !||| !!!!:!! !! !:!!:!: lyGlyValLeuCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGl 260167 : GCGGAGTTCTGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGG : 260223 170 : >IleAspAsnGluThrValArgSerGlnThrPheProIleTyrArgArgLeuLeuAsp : 187 ! !!!:!....!! !|||!.! ! ! !!! ! !!:!:|||!:!..!|||:!!:!! yAsnGluThrArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsn 260224 : AAACGAGACGAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAAC : 260280 188 : ProArgThrThrProSerValGluIleValGlnPheMetGlnCysLeuAlaAlaPheV : 207 !!.! !!:!|||! ! !|||||||||! !!:!!|||! !:!!:!!!.!|||: ValAsnAspSerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheI 260281 : GTGAACGACAGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCA : 260340 208 : alMetTyrSerValThrValGlySerCysSerLeuAlaAlaValPheValMetHisAl : 226 !!:!! !!||| !|||||||||! !! !|||||||||||||||.!...! ||||| leValAsnSerSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAl 260341 : TAGTGAATTCGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGC : 260397 227 : aCysGlyGlnPheArgIleLeuValMetLysLeuGlnArgLeuValAspGlyAlaThr : 245 ||||||||||!!.!.!:!:|||:!! !:!! !..!!!!||||||! !:!!! ! aCysGlyGlnLeuAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArg 260398 : GTGCGGCCAGTTGAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGG : 260454 246 : GlyLysAsnSerValArgThrTyrGluHisArgLeuGlyAspIleValGluHisHisL : 265 ..!!:!!!.!.! ! ! !!!:!:!! ..!:!!|||! |||||||||||||||| AsnArgLysLysLysAlaProPheLys---GluIleGlyValIleValGluHisHisL 260455 : AACAGGAAGAAAAAGGCTCCTTTCAAG---GAGATCGGAGTGATTGTCGAACATCATT : 260511 266 : eu{Gl} >>>> Target Intron 1 >>>> {n}IleLeuArgPheIleSerAr : 273 ||{::} 257 bp {!}:!:! !!!!||||||||||| eu{Ar}-- -+{g}LeuCysSerPheIleSerAr 260512 : TG{AG}ag.........................tg{A}TTGTGCAGCTTCATATCGCG : 260792 274 : gValGluAspLeuLeuAsnGluIleCysLeuVal{Gl} >>>> Target Intron : 285 |:!!||||||:!!:!!|||..!||||||!!!:!!{!!} 852 bp gIleGluAspValMetAsnArgIleCysPheLeu{As}++ 260793 : TATCGAGGATGTGATGAACCGGATATGCTTCCTG{GA}gt.................. : 260832 286 : 2 >>>> {u}ValValGlyCysThrMetAsnIleCysPheLeuGlyTyrTyrLeuL : 301 {:} !! ! !! ! !:!:! |||! !||| ::::::|||| ++{p}TyrAspCysAsnCysValIleIlePhePhe***TyrPhePheLeuL 260833 : .......ag{T}TACGATTGCAATTGTGTAATAATCTTTTTctgatatttctttcttt : 261728 302 : euThrGluTrpGluGlnSerGluAlaIleGlyThrLeuThrTyrCysLeuPhePheIl : 320 || ||||||! :!!..!!!: ! !..! !! !||||||! !:!!.!..!.|| euGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheMetMetLeuIl 261729 : tgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCATGATGCTGAT : 261785 321 : eSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuSerGluGln : 339 |:!!:!! !||||||:!!||||||:!!|||||||||||||||||||||!!!|||||| eAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLeuThrGluGln 261786 : AGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACTAACGGAACAG : 261842 340 : CysGlnAsnVal : 343 |||:!!:!! ValGlnHisLeu 261843 : GTACAACATTTG : 261856 vulgar: gi|383850736|ref|XP_003700932.1| 14 343 . KQ414889.1 259772 261856 + 444 M 57 171 G 1 0 M 43 129 G 3 0 M 50 150 G 0 3 M 86 258 G 1 0 M 10 30 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 18 54 S 0 2 5 0 2 I 0 848 3 0 2 S 1 1 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259773 261856 444 + . gene_id 8 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259773 260515 . + . KQ414889.1 exonerate:protein2genome:local exon 259773 260515 . + . insertions 3 ; deletions 5 KQ414889.1 exonerate:protein2genome:local splice5 260516 260517 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local intron 260516 260772 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260771 260772 . + . intron_id 0 ; splice_site "TG" KQ414889.1 exonerate:protein2genome:local cds 260773 260829 . + . KQ414889.1 exonerate:protein2genome:local exon 260773 260829 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260830 260831 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260830 261681 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261680 261681 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261682 261856 . + . KQ414889.1 exonerate:protein2genome:local exon 261682 261856 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259773 261856 444 + . alignment_id 8 ; Query gi|383850736|ref|XP_003700932.1| ; Align 259773 15 171 ; Align 259944 73 129 ; Align 260073 119 150 ; Align 260226 169 258 ; Align 260484 256 30 ; Align 260774 267 54 ; Align 261683 286 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 440 Query range: 14 -> 302 Target range: 274383 -> 275309 15 : TyrSerIleGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL : 34 ||||||:!:|||:!!|||||||||||||||||||||||||||!.!|||||||||:!!! TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaS 274384 : TACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCT : 274441 35 : euSerValThrThrPheGlyLysLeuAsnSerIleIleLeuAlaLeuIleSerSerPh : 53 ! !!..!|||! !|||! !::!:!! !||| !:::||| ...::: !! erProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCy 274442 : CGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTG : 274498 54 : eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrLeuLeuAspLysThrGly : 72 !!!!||| !! ! !:!!:!!||| !! !!!! !! !:!!||| ! !! ! sPheIleLeuSerThrValIleProSerIlePheHisIleIleLeu---ValAspGlu 274499 : CTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTA---GTAGATGAA : 274552 73 : AspLeuAspThrLysValLysMetIleGlyProLeuSerPheCysMetMetSerThrP : 92 ..!||| !! !|||:!!|||:!!:!!|||||||||.!! !!! .!.!!:.!! !. SerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyI 274553 : AGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAA : 274612 93 : heLysTyrTyrIleLeuAlaSerArgGlyGlyLysIleSerGluCysIleGluSerMe : 111 !!!!.||| !! ||| ! !|||.!! !:!!||| !!! |||:!:||| !|| leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 274613 : TTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACAT : 274669 112 : tArgSerAspTrpAlaLysThrArgSerAlaGlyTyrGluGluAspArgGluIleIle : 130 |!:!!!!|||||| |||! !!.! ! !||||||!:!:!!:!:!!: tGlnThrAspTrp---------ArgIleValThrArgProGluAspGlnGlnValMet 274670 : GCAAACAGATTGG---------AGGATCGTGACCAGACCGGAGGATCAACAAGTGATG : 274717 131 : IleAspCysAlaArgValGlyArgSerIleAlaIleIleCysAlaGlyPheMetTyrS : 150 :!: ! !|||!:!:!!||||||! !:!!||||||.!!||||||!.!|||||| ! ! LeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnC 274718 : TTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAAT : 274777 151 : erGlyGlyCysPheTyrThrAlaValMetProLeuTyrSerLysArgThrGluIle<- : 169 !!|||! ! !! !||| !!.!:!!! !!!!! !! !:!!! !..!:!!:!! ysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGl 274778 : GCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGG : 274834 170 : >IleAspAsnGluThrValArgSerGlnThrPheProIleTyrArgArgLeuLeuAsp : 187 ! !!!:!.!..!||||||!.!! ! ! !!! ! ! !|||!:!!:!:!!:!!! yAsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAla 274835 : GAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCG : 274891 188 : ProArgThrThrProSerValGluIleValGlnPheMetGlnCysLeuAlaAlaPheV : 207 ! !|||!:!|||!!! !|||||||||! ! !|||! !:!!:!!!.!|||: ValAspThrSerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheI 274892 : GTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTA : 274951 208 : alMetTyrSerValThrValGlySerCysSerLeuAlaAlaValPheValMetHisAl : 226 !!:!! !!||| !.!!||||||:!!! !||||||||||||||||||!.! ||||| leValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAl 274952 : TCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGC : 275008 227 : aCysGlyGlnPheArgIleLeuValMetLysLeuGlnArgLeuValAspGlyAlaThr : 245 |! !||||||!!.!!!:!:|||:!!!!: !:!! ..!!!!|||:!! !:!!! ! aTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArg 275009 : TTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGG : 275065 246 : GlyLysAsnSerValArgThrTyrGluHisArgLeuGlyAspIleValGluHisHisL : 265 ! :::|||... ......||| !..!:!!|||! :!!||||||||||||| AspGlnAsnLys---AsnValTyrPheSerGluIleGlyValValValGluHisHisL 275066 : GAtcagaataaa---aatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATC : 275122 266 : euGlnIleLeu{Ar} >>>> Target Intron 1 >>>> {g}PheIleSerAr : 273 ||::!:!!|||{!!} 74 bp {!}||||||:!!|| euArgValLeu{Se}++ ++{r}PheIleAlaAr 275123 : TGAGGGTACTC{AG}gt.........................ag{T}TTCATAGCACG : 275220 274 : gValGluAspLeuLeuAsnGluIleCysLeuValGluValValGlyCysThrMetAsn : 292 |:!!||||||:!!:!!|||..!||||||!!!:!!|||:!! !! !||||||:!!:!! gIleGluAspValMetAsnArgIleCysPheMetGluLeuPheLysCysThrLeuAsp 275221 : TATCGAGGATGTGATGAATCGAATATGCTTCATGGAATTGTTCAAGTGTACTCTGGAT : 275277 293 : IleCysPheLeuGlyTyrTyrLeuLeuThr : 302 !!:|||.!.||||||||||||:!!|||||| MetCysMetLeuGlyTyrTyrIleLeuThr 275278 : ATGTGCATGCTTGGCTATTACATTCTCACG : 275309 vulgar: gi|383850736|ref|XP_003700932.1| 14 302 . KQ414889.1 274383 275309 + 440 M 54 162 G 1 0 M 46 138 G 3 0 M 50 150 G 0 3 M 81 243 G 1 0 M 18 54 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274384 275309 440 + . gene_id 9 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274384 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274384 275135 . + . insertions 3 ; deletions 5 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275309 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275309 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274384 275309 440 + . alignment_id 9 ; Query gi|383850736|ref|XP_003700932.1| ; Align 274384 15 162 ; Align 274546 70 138 ; Align 274684 119 150 ; Align 274837 169 243 ; Align 275080 251 54 ; Align 275211 270 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 420 Query range: 4 -> 271 Target range: 217144 -> 217930 5 : SerAspLeuSerLeuGluAsnAspTrpMetTyrSerIleGlnMetAsnArgTrpPheL : 24 !!!|||! !... |||...::: ||||||||| !|||||||||!!.| ThrAspTyrGluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuL 217145 : ACCGACTACGAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGT : 217202 25 : euLysProIleGlyValTrpProLeuSerLeuSerValThrThrPheGlyLysLeuAs : 43 ||||||||!!:|||:!!|||||| !|||! !!!!..!|||! !! ! !!|||:!! euLysProMetGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLe 217203 : TGAAACCGATGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCT : 217259 44 : nSerIleIleLeuAlaLeuIleSerSerPheLeuIleGlyPheLeuLeuValProCys : 62 !! !! !:!::!! ! !:!!!!!! ! !||||||.!!||||||!!!||||||||| uTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCys 217260 : CTACAAACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGC : 217316 63 : AlaLeuCysThrLeuLeuAspLysThrGlyAspLeuAspThrLysValLysMetIleG : 82 :!!:!!! !..!!!!|||!!: ..!! !|||||| !! !|||:!!|||:!!.!!| SerMetTyrValPheLeuGlu---ValGluAspLeuTyrAspLysLeuLysLeuPheG 217317 : TCCATGTACGTGTTCCTCGAA---GTTGAAGATCTCTACGACAAGTTGAAACTGTTCG : 217373 83 : lyProLeuSerPheCysMetMetSerThrPheLysTyrTyrIleLeuAlaSerArgGl : 101 ||||||||! !||||||:!!|||:!! ! !!||||||||| !||| ! !!.! lyProLeuIlePheCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLy 217374 : GTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAA : 217430 102 : yGlyLysIleSerGluCysIleGluSerMetArgSerAspTrpAlaLysThrArgSer : 120 !!.! ! ||| !!||||||:!:..!!!!!!:..! !!|||||| !!!...!|||!!! sAlaAspIleArgGluCysValArgArgIleGluArgAspTrpArgAsnValArgCys 217431 : GGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGC : 217487 121 : AlaGlyTyrGluGluAspArgGluIleIleIleAspCysAlaArgValGlyArgSerI : 140 |||:!!||||||||| !!:|||! !|||!.! !!||||||!.!: ---------GluLysAspArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysL 217488 : ---------GAGAAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAAT : 217538 141 : leAlaIleIleCysAlaGlyPheMetTyrSerGlyGlyCysPheTyrThrAlaValMe : 159 !:!.!:!!:!!|||.!! !||||||||||||||| |||||| !!.!!! euValLeuLeuCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIl 217539 : TGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcgttttttattacatCGCTAT : 217595 160 : tProLeuTyrSerLysArg<->ThrGluIleIleAspAsnGluThrValArgSerGln : 177 :|||:!! ! ! !||| !..! ! !! ||| ||| !!! ! !! ! eProIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeu 217596 : ACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTG : 217652 178 : ThrPheProIleTyrArgArgLeuLeuAspProArgThrThrProSerValGluIleV : 197 ..!||||||.!! !:! !:!!:!!||| !!||| !||||||!!! !||||||| ValPheProPheThrLysTyrIleIleAspThrArgTyrThrProThrAsnGluIleV 217653 : GTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCTACGAACGAAATTG : 217712 198 : alGlnPheMetGlnCysLeuAlaAlaPheValMetTyrSerValThrValGlySerCy : 216 || |||:!:|||! :!!|||!.! !:!!|||:!!.!!:!!||| !!.!:!!|| alPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCy 217713 : TGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTG : 217769 217 : sSerLeuAlaAlaValPheValMetHisAlaCysGlyGlnPheArgIleLeuValMet : 235 |||||||||||||!.!|||!.!:!:|||||||||||||||.!!..!:!:|||:!!! sSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGluValLeuMetAsn 217770 : CAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAAC : 217826 236 : LysLeuGlnArgLeuValAspGlyAlaThrGlyLysAsnSerValArgThrTyrGluH : 255 !||||||!.!|||:!!|||||| !.!!! !! !!:!..! ||| !!: TrpLeuGlnHisLeuIleAspGlyArgAlaAspMetSerAsp------ThrValAspG 217827 : TGGCTGCAACATTTAATCGACGGTAGAGCGGATATGAGCGAT------ACTGTGGATG : 217880 256 : isArgLeuGlyAspIleValGluHisHisLeuGlnIleLeuArgPheIle : 271 !|||:!!!.!..!||||||...!!.|||:!!!:!||||||!:!! !:!! lyArgIleAlaSerIleValSerGlnHisValArgIleLeuLysCysVal 217881 : GTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTAAAGTGTGTA : 217930 vulgar: gi|383850736|ref|XP_003700932.1| 4 271 . KQ414889.1 217144 217930 + 420 M 65 195 G 1 0 M 50 150 G 3 0 M 42 126 G 0 3 M 84 252 G 2 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217145 217930 420 + . gene_id 10 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217145 217930 . + . KQ414889.1 exonerate:protein2genome:local exon 217145 217930 . + . insertions 3 ; deletions 6 KQ414889.1 exonerate:protein2genome:local similarity 217145 217930 420 + . alignment_id 10 ; Query gi|383850736|ref|XP_003700932.1| ; Align 217145 5 195 ; Align 217340 71 150 ; Align 217490 124 126 ; Align 217619 166 252 ; Align 217871 252 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 418 Query range: 15 -> 271 Target range: 221381 -> 222134 16 : SerIleGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuS : 35 |||:!:|||:!!!:!||||||.!!|||||||||||||||||||||||| !||| !! SerValGlnLeuSerArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaA 221382 : AGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCA : 221439 36 : erValThrThrPheGlyLysLeuAsnSerIleIleLeuAlaLeuIleSerSerPheLe : 54 :!:!!:!!||| ! ! !!:!! ! !! ! :!::!! !:!!:!!!!!! ! !|| snIleSerThrValGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLe 221440 : ACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCT : 221496 55 : uIleGlyPheLeuLeuValProCysAlaLeuCysThrLeuLeuAspLysThrGlyAsp : 73 |||| !||||||||||||||||||::!|||! !..!:!!|||!!: ..!! !||| uIleThrPheLeuLeuValProCysSerLeuTyrValIleLeuGlu---ValGluAsp 221497 : GATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTCGAA---GTAGAAGAT : 221550 74 : LeuAspThrLysValLysMetIleGlyProLeuSerPheCysMetMetSerThrPheL : 93 :!! !!!.!!:!:!!|||:!!:!:||||||||||||||||||:!!|||:!! !.!.| ValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuL 221551 : GTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAA : 221610 94 : ysTyrTyrIleLeuAlaSerArgGlyGlyLysIleSerGluCysIleGluSerMetAr : 112 |||||:!!:!:||| ! ! !! !..! ! ||| !!|||||||||||| !!!!:.. ysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGl 221611 : AGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGA : 221667 113 : gSerAspTrpAlaLysThrArgSerAlaGlyTyrGluGluAspArgGluIleIleIle : 131 !!!!|||||| !:!!:! ! !|||...:!!|||!:!!!:|||!!:||| uTrpAspTrp---------LysAsnIleThrTyrSerLysAspLysAspIleMetIle 221668 : ATGGGATTGG---------AAGAATATCACTTACTCCAAGGATAAGGATATAATGATA : 221715 132 : AspCysAlaArgValGlyArgSerIleAlaIleIleCysAlaGlyPheMetTyrSerG : 151 !!: !|||! ! !!|||||| !!:!: !!!:||||||.!! !||||||||||||| GluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheMetTyrSerG 221716 : GAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGTACAGTg : 221775 152 : lyGlyCysPheTyrThrAlaValMetProLeuTyrSerLysArgThrGluIleIleAs : 170 || |||||| !!.!!!:|||!!! ! ! !:!! ! || lyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIleProAlaGlnAs 221776 : gtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGA : 221832 171 : p<->AsnGluThrValArgSerGlnThrPheProIleTyrArgArgLeuLeuAspPro : 188 | ||| ||| !!..!..!||||||.!!! ||| !:!!:!!||| !! pValAsnValThrPheIleProMetValPheProPheSerArgPheIleValAspThr 221833 : TgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTCGATACT : 221889 189 : ArgThrThrProSerValGluIleValGlnPheMetGlnCysLeuAlaAlaPheValM : 208 ||| !!:!||| ! !||||||:!! ! :!:||| !:!!|||!.! !:!!| ArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyAlaLeuM 221890 : CGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTTGA : 221949 209 : etTyrSerValThrValGlySerCysSerLeuAlaAlaValPheValMetHisAlaCy : 227 ||:!!|||:!!||| !!.!:!!|||||||||!.!|||:!!|||!.!:!!|||||||| etHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaValHisAlaCy 221950 : TGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCTTG : 222006 228 : sGlyGlnPheArgIleLeuValMetLysLeuGlnArgLeuValAspGlyAlaThrGly : 246 |||||||.!.!:!:!:|||:!!! !|||:!!!.!|||:!!:!!||| !.!! sGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsnGlyArgAla--- 222007 : CGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGCCGGGCG--- : 222063 247 : LysAsnSerValArgThrTyrGluHisArgLeuGlyAspIleValGluHisHisLeuG : 266 :!!! ! !!.!!.! !!:...|||:!!!.! ! ||||||.!.!!.|||:!!! ---AspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnHisValA 222064 : ---GATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAACACGTTC : 222117 267 : lnIleLeuArgPheIle : 271 :!||||||!:!!:!:!! rgIleLeuGlnTyrVal 222118 : GAATATTGCAGTATGTA : 222134 vulgar: gi|383850736|ref|XP_003700932.1| 15 271 . KQ414889.1 221381 222134 + 418 M 54 162 G 1 0 M 45 135 G 3 0 M 52 156 G 0 3 M 75 225 G 2 0 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221382 222134 418 + . gene_id 11 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221382 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221382 222134 . + . insertions 3 ; deletions 6 KQ414889.1 exonerate:protein2genome:local similarity 221382 222134 418 + . alignment_id 11 ; Query gi|383850736|ref|XP_003700932.1| ; Align 221382 16 162 ; Align 221544 71 135 ; Align 221679 119 156 ; Align 221838 171 225 ; Align 222063 248 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 410 Query range: 9 -> 392 Target range: 204221 -> 206401 10 : GluAsnAspTrpMetTyrSerIleGlnMetAsnArgTrpPheLeuLysProIleGlyV : 29 |||.!.||| !! |||:!!! !!::.!. !:! !.!!||| ! !:!!|||! GluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyA 204222 : GAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTG : 204279 30 : alTrpProLeuSerLeuSerValThrThrPheGlyLysLeuAsnSerIleIleLeuAl : 48 .!||||||:!! !!:!!!:! !:!! !!||| !!:!||| !! !||| ! laTrpProIleProValAsnSerSerProPheThrArgLeuValArgArgIleGluHi 204280 : CGTGGCCGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACA : 204336 49 : aLeuIleSerSerPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrLeu : 67 !:!!:!!!!! ||||||... ...:!!:!!|||||| !! !|||! !..!!!! sValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPhe 204337 : CGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTC : 204393 68 : LeuAspLysThrGlyAspLeuAspThrLysValLysMetIleGlyProLeuSerPheC : 87 ||| ||| ! !:!! ! ! ! !::::!!|||!!::!!||||||:!! ! !| Leu---LysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnC 204394 : CTG---AAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACT : 204450 88 : ysMetMetSerThrPheLysTyrTyrIleLeuAlaSerArgGlyGlyLysIleSerGl : 106 ||! !!:..! !|||||||||! !:!!:!! !! !||| !! !||||||..!:! ysSerIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLy 204451 : GCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAA : 204507 107 : uCysIleGluSerMetArgSerAspTrpAlaLysThrArgSerAlaGlyTyrGluGlu : 125 ! !!:!:.!.!!!!!:||| !!|||||| !:!!.!!! ! !!:||| sSerLeuAsnThrIleArgArgAspTrpIleGluAlaThr------------AspGlu 204508 : GAGTTTGAACACCATCAGACGCGACTGGATAGAGGCTACG------------GATGAA : 204552 126 : AspArgGluIleIleIleAspCysAlaArgValGlyArgSerIleAlaIleIleCysA : 145 :!!||| !|||.!! !... |||!:!:!!||||||!!!:!: !:!:|||...| AsnArgLeuIlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaA 204553 : AATCGGTTGATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAG : 204612 146 : laGlyPheMetTyrSerGlyGlyCysPheTyrThrAlaValMetProLeuTyrSerLy : 164 ||!.! !||||||.!!||||||! ! !|||! !.!!:!!:!:||||||! !!! laAlaThrMetTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGl 204613 : CCGCCACTATGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGG : 204669 165 : sArgThrGluIleIleAspAsnGluThrValArgSerGlnThrPheProIleTyrArg : 183 !! !! !! !! ! !||||||! |||:!!||| !! ! !!! !|||:!!||| yThrIleValThrProAspAsnValThrIleArgProLeuProCysProValTyrPhe 204670 : AACGATCGTAACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtacttt : 204726 184 : ArgLeuLeuAspProArgThrThrProSerValGluIleValGlnPheMetGlnCysL : 203 ......::: !!:! !:!!|||!:! !||||||||| .!.:!!||| !: ValPhePheAsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleM 204727 : gttttctttaacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTA : 204786 204 : euAlaAlaPheValMetTyrSerValThrValGlySerCysSerLeuAlaAlaValPh : 222 !!|||!.!||||||! |||:!!|||! ! !|||!!!|||.!!:!!..!|||:!!|| etAlaGlyPheValThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPh 204787 : TGGCTGGTTTTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTT : 204843 223 : eValMetHisAlaCysGlyGlnPheArgIleLeuValMetLysLeuGlnArgLeuVal : 241 ||||:!:|||||||||.!!..!.!.||||||||||||! |||:!!.!. !|||||| eValLeuHisAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuVal 204844 : CGTTCTCCACGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTG : 204900 242 : AspGlyAlaThrGlyLysAsnSerValArgThrTyrGluHisArgLeuGlyAspIleV : 261 ||| !||| ! !! .!.!!!:!! .!....!:!:!!!.!||||||| AspLysAlaAspMetThrGluThrLeu------ValHisArgLysIleAlaAspIleV 204901 : GATAAGGCGGACATGACCGAGACACTT------GTGCACAGGAAGATCGCTGATATTG : 204954 262 : alGluHisHisLeuGlnIleLeu{Ar} >>>> Target Intron 1 >>>> {g : 269 |||||:!!!!. !:!!||| !{||} 1047 bp {| alGluTyrGlnThrLysIleLys{Ar}++ ++{g 204955 : TTGAATATCAGACGAAGATAAAG{AG}gt.........................ag{A : 206027 270 : }PheIleSerArgValGluAspLeuLeuAsnGluIleCysLeuValGluValValGly : 288 } !! !.!!||| ! ! ! !.....!! ! :!! !:!! !:!! ! }AsnThrGlyArgSerCysPheArgAsnGlyArgThrIleIleGlnGlnArgLeu*** 206028 : }AATACAGGACGATCGTGTTTTAGGAATGGGAGAACAATAATACAACAGCGGTTATAG : 206082 289 : CysThrMetAsnIleCysPheLeuGlyTyrTyrLeuLeuThrGluTrpGluGlnSerG : 308 |||||| ..! ! ! !:!|||! !:!!! ! !!!! ! ! !::! !|||! CysThrSerArgCysArgTyrLeuValHisSerAlaPheLeuTyrTyrAlaThrSerG 206083 : TGTACATCACGTTGCAGATATCTTGTACATTCTGCGTTTTTATACTATGCTACATCGG : 206142 309 : luAlaIleGlyThrLeuThrTyrCysLeuPhePheIleSerLeuThrPheAsnIlePh : 327 ::!.!! !:!!:!!! !! ! :!! !:! !!!! !|||!:: ::::: lySerPheLeuSerIleLysCysValIleThrTyrGln***SerThrTrpIleLeuTr 206143 : GCAGCTTCTTATCGATCAAGTGCGTGATTACGTATCAATGAAGTACGTGGattctttg : 206199 328 : eIleLeuCysTyrIleGlyGluIleLeuSerGlu-----GlnCysGlnAsnValGlyL : 345 :|||... !:!! !..!! !:!!!!! #####||| !!!. !||||||| pIlePheLeuThrLeuThrArgSerIleThrIle#####GlnAsnHisValValGlyL 206200 : gatttttttaaCTCTTACTAGAAGTATTACCATTTTTAACAGAACCACGTCGTGGGAT : 206258 346 : euSerAlaCysMetIleAspTrpTyrArgPheArgGlnLysLysAlaLeuGlyLeuIl : 364 ||!!!:!!|||! !:!::!!|||||||||.!!! !.!.!:! ! |||! !..!:!!|| euThrSerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgSerMetIl 206259 : TGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGAT : 206315 365 : eLeuIleValAlaIleSerAsnSerSerThrLysLeuThrAlaGlyLysLeuValGlu : 383 |||||||:!!|||!!:||||||! ! !!! !||||||||||||||||||:!! !!||| eLeuIleIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMetPheGlu 206316 : ACTGATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAA : 206372 384 : LeuSerLeuSerAsnPheCysSerVal : 392 :!!||||||:!!!:!||| !..!||| MetSerLeuAlaSerPheThrAspVal 206373 : ATGTCTTTAGCTAGTTTCACCGATGTA : 206401 vulgar: gi|383850736|ref|XP_003700932.1| 9 392 . KQ414889.1 204221 206401 + 410 M 59 177 G 1 0 M 50 150 G 4 0 M 127 381 G 2 0 M 16 48 S 0 2 5 0 2 I 0 1043 3 0 2 S 1 1 M 69 207 F 0 5 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204222 206401 410 + . gene_id 12 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 204222 204979 . + . KQ414889.1 exonerate:protein2genome:local exon 204222 204979 . + . insertions 0 ; deletions 7 KQ414889.1 exonerate:protein2genome:local splice5 204980 204981 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 204980 206026 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206025 206026 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206027 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206027 206401 . + . insertions 0 ; deletions 0 ; frameshifts 5 KQ414889.1 exonerate:protein2genome:local similarity 204222 206401 410 + . alignment_id 12 ; Query gi|383850736|ref|XP_003700932.1| ; Align 204222 10 177 ; Align 204399 70 150 ; Align 204549 124 381 ; Align 204930 253 48 ; Align 206028 270 207 ; Align 206240 339 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 406 Query range: 5 -> 269 Target range: 303169 -> 304869 6 : AspLeuSerLeuGluAsnAspTrpMetTyrSerIleGlnMetAsnArgTrpPheLeuL : 25 :!!|||!:!! !:!!!!.||| :!:||| !! !:!! !:!!:!|||.!!|||| AsnLeuAsnTyrLysLysAspIleValTyrValThrLysHisSerLysTrpIleLeuL 303170 : AATTTGAATTACAAGAAAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCCTGA : 303227 26 : ysProIleGlyValTrpProLeuSerLeuSerValThrThrPheGlyLysLeuAsnSe : 44 || !!:!!|||:!!|||||| ! !|||..!! !|||.!! ||| ||| !. ysSerLeuGlyIleTrpProAlaValLeuAspGluThrAla---GlyPheLeuProLy 303228 : AGTCCCTTGGTATTTGGCCAGCCGTGTTGGACGAAACCGCA---GGATTCCTACCAAA : 303281 45 : rIleIleLeuAlaLeuIleSerSerPheLeuIleGlyPheLeuLeuValProCysAla : 63 !|||! !:!!!.!||| |||!:!!!.:!!:!! !||| !:!!:!!|||||| ! sIleThrIleGlyLeu---SerAsnLeuValLeuLeuPheThrValIleProCysIle 303282 : AATCACCATTGGACTC---AGTAATTTGGTTCTATTATTCACCGTGATACCGTGTATT : 303335 64 : LeuCysThrLeuLeuAspLysThrGlyAspLeuAspThrLysValLysMetIleGlyP : 83 ||| !! !:!!!!!!!::!!! ! ||| ! ! !!:!:!!|||:!:.!!|||! LeuHisIleIlePheGluGlnLys---AspThrIleIleArgLeuLysLeuPheGlyL 303336 : CTACACATAATATTCGAACAAAAG---GATACGATAATAAGATTGAAACTATTCGGTC : 303392 84 : roLeuSerPheCysMetMetSerThrPheLysTyrTyrIleLeuAlaSerArgGlyGl : 102 !||||||||||||:!!!!:||| !.!.||||||!:: !||||||!!!||| ! euLeuSerPheCysLeuIleSerLeuMetLysTyrTrpAlaLeuAlaThrArgLysPr 303393 : TGCTGAGTTTCTGTTTGATCTCGTTGATGAAGTATTGGGCCCTCGCCACGCGGAAACC : 303449 103 : yLysIleSerGluCysIleGluSerMetArgSerAspTrpAlaLys >>>> Targe : 118 !!:!|||!.!||||||||||||..!:!!!:!||||||||| !:!! oArgIleLysGluCysIleGluGluValGlnSerAspTrpLysGlu++ 303450 : AAGGATCAAAGAATGTATAGAAGAGGTGCAAAGTGATTGGAAAGAGgt.......... : 303499 119 : t Intron 1 >>>> ThrArgSerAlaGlyTyrGluGluAspArgGluIleIleIl : 131 929 bp !..!..!!.!! !! ! ..!|||||||||!!:!!::! --TyrGluGlnValGluSerLeuArgAspArgGluMetMetLe 303500 : ...............gaTATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCT : 304465 132 : eAspCysAlaArgValGlyArgSerIleAlaIleIleCysAlaGlyPheMetTyrSer : 150 ! ! ! !!.!!:!:!!||||||!:!:!:.!!|||||||||||| !|||||||||!!! uLysTyrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThr 304466 : AAAATACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACC : 304522 151 : GlyGlyCysPheTyrThrAlaValMetProLeuTyrSerLysArgThrGluIleIleA : 170 |||||| !.!!||| !.!!||||||! !!!! !!! !! ! !! ! ! GlyGlyThrIleTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGluT 304523 : GGCGGCACCATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGT : 304582 171 : spAsnGluThrValArgSerGlnThrPheProIleTyrArgArgLeuLeuAspProAr : 189 !!|||...|||:!!!:! !!! ..!!:!|||! !|||!!! !|||!!!||| !!: yrAsnArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGl 304583 : ATAATCGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCA : 304639 190 : gThrThrProSerValGluIleValGlnPheMetGlnCysLeuAlaAlaPheValMet : 208 !|||!:!|||! ! !|||:!:||| ! |||:!:!!.|||:!!..!!.!!:!|||!!: nThrSerProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIle 304640 : AACAAGCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATT : 304696 209 : TyrSerValThrValGlySerCysSerLeuAlaAlaValPheValMetHisAlaCysG : 228 ||||||:!!|||!.!|||:!!|||.!!|||||||||:!!|||!.!! |||||||||| TyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysG 304697 : TATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTG : 304756 229 : lyGlnPheArgIleLeuValMetLysLeuGlnArgLeuValAspGlyAlaThrGlyLy : 247 |||||.!! !|||:!!:!! ::!||| !||||||:!!.!! ! !..!.. lyGlnIleAspIleValMetSerArgLeuGlyAspLeuValAsnSerLysGluSerSe 304757 : GACAAATTGATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCATC : 304813 248 : sAsnSerValArgThrTyrGluHisArgLeuGlyAspIleValGluHisHisLeuGln : 266 .:!! ! !!: ! |||||| !!!:||||||||||||||||||!:! rAsp------------LeuAspLysArgLeuIleGluIleValGluHisHisLeuArg 304814 : TGAT------------TTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGA : 304858 267 : IleLeuArg : 269 ||||||||| IleLeuArg 304859 : ATTTTAAGG : 304869 vulgar: gi|383850736|ref|XP_003700932.1| 5 269 . KQ414889.1 303169 304869 + 406 M 33 99 G 1 0 M 10 30 G 1 0 M 21 63 G 1 0 M 45 135 5 0 2 I 0 925 3 0 2 M 131 393 G 4 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303170 304869 406 + . gene_id 13 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303170 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303170 303496 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304425 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304424 304425 . + . intron_id 0 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local cds 304426 304869 . + . KQ414889.1 exonerate:protein2genome:local exon 304426 304869 . + . insertions 0 ; deletions 4 KQ414889.1 exonerate:protein2genome:local similarity 303170 304869 406 + . alignment_id 13 ; Query gi|383850736|ref|XP_003700932.1| ; Align 303170 6 99 ; Align 303269 40 30 ; Align 303299 51 63 ; Align 303362 73 135 ; Align 304426 118 393 ; Align 304819 253 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 382 Query range: 3 -> 271 Target range: 212839 -> 213628 4 : LeuSerAspLeuSerLeuGluAsnAspTrpMetTyrSerIleGlnMetAsnArgTrpP : 23 :!!..!|||! !!!!! !|||!!. |||||| ! !|||||||||. ValGluAspCysThrTyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpL 212840 : GTCGAAGACTGTACCTACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGC : 212897 24 : heLeuLysProIleGlyValTrpProLeuSerLeuSerValThrThrPheGlyLysLe : 42 !!|||||||||! |||:!!|||||| !!.!! !! !|||:!! !!.!!! !||| euLeuLysProThrGlyLeuTrpProAspLysSerTyrValSerProIleGluLysAs 212898 : TTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAA : 212954 43 : uAsnSerIleIleLeuAlaLeuIleSerSerPheLeuIleGlyPheLeuLeuValPro : 61 !! !:!! !:!::!! ! !:!!!!!! ! !|||||||||!:!|||:!!:!!||| nIleAlaArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIlePro 212955 : CATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCG : 213011 62 : CysAlaLeuCysThrLeuLeuAspLysThrGlyAspLeuAspThrLysValLysMetI : 81 |||::!|||! !..!!!!|||||| ..! :::::: ::::!!:!!:!!. CysSerLeuTyrValPheLeuAsp---ValGluAsnIlePheLysGluIleGluLeuP 213012 : TGCAGTTTGTACGTGTTCCTCGAC---GTAgagaatatatttaaagagaTCGAATTGT : 213068 82 : leGlyProLeuSerPheCysMetMetSerThrPheLysTyrTyrIleLeuAlaSerAr : 100 !!||| !!!!:!!||||||:!! :!! !!::||||||:!! ||| ! !!. heGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHi 213069 : TCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCA : 213125 101 : gGlyGlyLysIleSerGluCysIleGluSerMetArgSerAspTrpAlaLysThrArg : 119 !|||! ! ! ||| !! !|||:!!||| !|||!:!! !|||||| !:! sGlyAspAspIleArgThrCysValGluHisMetLysTyrAspTrp---------Lys 213126 : CGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGG---------AAG : 213173 120 : SerAlaGlyTyrGluGluAspArgGluIleIleIleAspCysAlaArgValGlyArgS : 139 !:! ! !:!!|||||||||!:!||||||!!: !|||!!! !!|||!:!! AsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysA 213174 : AATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGA : 213233 140 : erIleAlaIleIleCysAlaGlyPheMetTyrSerGlyGlyCysPheTyrThrAlaVa : 158 !!|||!.!! !||||||||| !|||||||||!!!||| ! |||||| ! !|| rgIleValThrIleCysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuVa 213234 : GGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGT : 213290 159 : lMetProLeuTyrSerLysArgThrGluIleIleAsp<->AsnGluThrValArgSer : 176 |:!:|||:!! !:!! ! !:!! !! ! ||| |||! !||| !!|||..! lValProIleSerAlaAspLysMetValAlaGluAspLeuAsnValThrPheArgGln 213291 : CGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAA : 213347 177 : GlnThrPheProIleTyrArgArgLeuLeuAspProArgThrThrProSerValGluI : 196 ..!..! !!|||:!!! ||| !:!!:!!||| !||| !!:!||| ! !|||| MetValValProValSerArgPheIleValAspValArgTyrSerProValAsnGluI 213348 : ATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGA : 213407 197 : leValGlnPheMetGlnCysLeuAlaAlaPheValMetTyrSerValThrValGlySe : 215 || !! !!.!!:||| !:!!|||!.! ! :!!!!::!!:!!:!!.!!|||! !:! lePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAl 213408 : TATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGC : 213464 216 : rCysSerLeuAlaAlaValPheValMetHisAlaCysGlyGlnPheArgIleLeuVal : 234 !|||||||||||||||||||||!.!:!:|||||||||||||||.!. !!||||||:!! aCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMet 213465 : TTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATG : 213521 235 : MetLysLeuGlnArgLeuValAspGlyAlaThrGlyLysAsnSerValArgThrTyrG : 254 ! !|||:!!!.!|||:!!|||||| ! :!!:!!! ! !!:!!.! ! SerTrpLeuGluHisLeuIleAspGlyArg------GluAspMetSerLysAsnValA 213522 : AGCTGGCTGGAACATTTGATAGACGGTAGA------GAGGATATGAGCAAGAATGTGG : 213575 255 : luHisArgLeuGlyAspIleValGluHisHisLeuGlnIleLeuArgPheIle : 271 !: !!|||:!!!.!! !||||||.!.!!.|||:!!!:!||||||!:!!:::!: spAspArgIleAlaValIleValAsnGlnHisValArgIleLeuLysTrpVal 213576 : ACGACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTGAAGTGGGTG : 213628 vulgar: gi|383850736|ref|XP_003700932.1| 3 271 . KQ414889.1 212839 213628 + 382 M 66 198 G 1 0 M 45 135 G 3 0 M 52 156 G 0 3 M 74 222 G 2 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212840 213628 382 + . gene_id 14 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212840 213628 . + . KQ414889.1 exonerate:protein2genome:local exon 212840 213628 . + . insertions 3 ; deletions 6 KQ414889.1 exonerate:protein2genome:local similarity 212840 213628 382 + . alignment_id 14 ; Query gi|383850736|ref|XP_003700932.1| ; Align 212840 4 198 ; Align 213038 71 135 ; Align 213173 119 156 ; Align 213332 171 222 ; Align 213554 247 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 369 Query range: 15 -> 272 Target range: 226933 -> 227689 16 : SerIleGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuS : 35 |||||||||:!!|||||||||.!.|||||||||:!!|||:!!||||||! !|||! !! SerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgL 226934 : AGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCA : 226991 36 : erValThrThrPheGlyLysLeuAsnSerIleIleLeuAlaLeuIleSerSerPheLe : 54 .! !:!! !.!.|||!:!! ! !||| :!::!!!.!!!!:!!!!!! ! || ysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLe 226992 : AAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCT : 227048 55 : uIleGlyPheLeuLeuValProCysAlaLeuCysThrLeuLeuAspLysThrGlyAsp : 73 |!!:.!!||| !|||||| !! !!!.!|||! !..!:!!|||!!: !! !|||! ! uMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAla 227049 : GATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCT : 227105 74 : LeuAspThrLysValLysMetIleGlyProLeuSerPheCysMetMetSerThrPheL : 93 ! !:!!||| :!!|||||||||||||||:!!||||||! ! !|||||| !.!!| TyrAsnThr---LeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuL 227106 : TACAACACG---CTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCA : 227162 94 : ysTyrTyrIleLeuAlaSerArgGlyGlyLysIleSerGluCysIleGluSerMetAr : 112 |||||! !!!:|||.!!! !!.!! !! ! ! ||| !||||||:!!||| !!!!:!: ysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIleLy 227163 : AGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAA : 227219 113 : gSerAspTrpAlaLysThrArgSerAlaGlyTyrGluGluAspArgGluIleIleIle : 131 !!!!|||||| !!!.! !||| ||| !|||||||||.!.:!:!!::!: sTrpAspTrpLysAsnIleArg---------TyrLeuGluAspArgAsnValMetVal 227220 : ATGGGACTGGAAGAATATCAGA---------TACCTGGAGGACAGAAACGTGATGGTG : 227267 132 : AspCysAlaArgValGlyArgSerIleAlaIleIleCysAlaGlyPheMetTyrSerG : 151 ! !||| ! !||||||!.!:!: !! !||||||.!! !|||:!:!:!|||. ThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerS 227268 : ACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgta : 227327 152 : lyGlyCysPheTyrThrAlaValMetProLeuTyrSerLysArgThrGluIleIleAs : 170 .. |||::: !|||:!:|||:!! !!:!! !!!!..!! !! || erPheValPhePheTyrIleValValProIleAsnAlaGlySerValAlaThrGluAs 227328 : gtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGA : 227384 171 : p<->AsnGluThrValArgSerGlnThrPheProIleTyrArgArgLeuLeuAspPro : 188 | |||.!.!:! !! !..!..! !!||||||.!! !:!! !:!! !||| ! pGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIleIleAlaAspVal 227385 : CGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTT : 227441 189 : ArgThrThrProSerValGluIleValGlnPheMetGlnCysLeuAlaAlaPheValM : 208 ||| !!:!|||! ! !|||||| !! ! :!:|||! !:!!.!!!.!.!!|||: ArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValThrGlyIleValL 227442 : CGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGT : 227501 209 : etTyrSerValThrValGlySerCysSerLeuAlaAlaValPheValMetHisAlaCy : 227 !!:!!.!!|||||| !!.!:!!||||||:!!||||||:!!.!!!.!:!:|||||||| euHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCy 227502 : TGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTG : 227558 228 : sGlyGlnPheArgIleLeuValMetLysLeuGlnArgLeuValAspGlyAlaThrGly : 246 |||||||.!...!:!:|||||| !||| !!.!|||:!!|||||| !.!!! ! sGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGlyArgAlaAsp 227559 : CGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGCAGAGCGGAT : 227615 247 : LysAsnSerValArgThrTyrGluHisArgLeuGlyAspIleValGluHisHisLeuG : 266 ! !!:! !:!||| !!: !!|||:!!!.!..!|||||| ||||||:!!! MetSer------LysThrLeuAspAspArgIleAlaSerIleValThrHisHisValA 227616 : ATGAGC------AAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACCACGTTC : 227669 267 : lnIleLeuArgPheIleSer : 272 :!||||||!:!! !:!!!!! rgIleLeuLysCysValThr 227670 : GAATATTGAAGTGTGTAACG : 227689 vulgar: gi|383850736|ref|XP_003700932.1| 15 272 . KQ414889.1 226933 227689 + 369 M 61 183 G 1 0 M 42 126 G 3 0 M 48 144 G 0 3 M 78 234 G 2 0 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226934 227689 369 + . gene_id 15 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226934 227689 . + . KQ414889.1 exonerate:protein2genome:local exon 226934 227689 . + . insertions 3 ; deletions 6 KQ414889.1 exonerate:protein2genome:local similarity 226934 227689 369 + . alignment_id 15 ; Query gi|383850736|ref|XP_003700932.1| ; Align 226934 16 183 ; Align 227117 78 126 ; Align 227243 123 144 ; Align 227390 171 234 ; Align 227624 251 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 358 Query range: 169 -> 392 Target range: 300186 -> 302036 170 : AspAsnGluThrValArgSerGlnThrPheProIleTyrArgArgLeuLeuAspProA : 189 !!:||| ! ||| !!:! !! !.!!!:!||| !||| ! !!!!!:!!||| !!! GluAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrG 300187 : GAGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACAC : 300244 190 : rgThrThrProSerValGluIleValGlnPheMetGlnCysLeuAlaAlaPheValMe : 208 :!|||!:!|||!!! !||||||||| |||......|||.!!||||||.!.:!!|| lnThrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMe 300245 : AAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCAT : 300301 209 : tTyrSerValThrValGlySerCysSerLeuAlaAlaValPheValMetHisAlaCys : 227 ||||!:!||||||..!!.!:!!! !||||||||||||:!!||||||! ||| !||| tTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCys 300302 : GTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGT : 300358 228 : GlyGlnPheArgIleLeuValMetLysLeuGlnArgLeuValAspGlyAlaThrGlyL : 247 ||||||.!!!:!|||! !:!! !!:!|||:!! !||||||!!: !||||||: GlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGlu---ArgThrGlyG 300359 : GGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAG---AGGACGGGAG : 300415 248 : ysAsnSerValArgThrTyrGluHisArgLeuGlyAspIleValGluHisHisLeuGl : 266 !!!!...! ! ! !!! !|||! !! !||||||..! !!|||:!!:! luLysAsp------AspGlyProAspProLeuValValIleValArgAspHisValLy 300416 : AGAAGGAC------GACGGTCCTGATCCTTTGGTCGTTATCGTTCGAGATCACGTGAA : 300466 267 : nIleLeu{Ar} >>>> Target Intron 1 >>>> {g}PheIleSerArgVal : 274 !:!!|||{||} 1110 bp {|} ! !!! ! !! sValLeu{Ar}++ ++{g}AspProCysSerPhe 300467 : GGTTTTA{AG}gt.........................ag{A}GACCCGTGTTCCTTC : 301600 275 : GluAspLeuLeuAsnGluIleCysLeuValGluValValGlyCysThrMetAsnIleC : 294 ... ! ! ! ! !.!.:!!||| ||| |||:!:||| ! Arg***ProThrPheHisLeuCysAlaValIleLysPheGluSerThrLeuAsnAlaL 301601 : CGTTAGCCAACTTTTCATCTCTGCgctgtaattaaatttgaatctACTTTAAATGCAA : 301660 295 : ysPheLeuGlyTyrTyrLeuLeuThrGluTrpGluGlnSerGluAlaIleGlyThrLe : 313 |||||| !! !! !!!! !||||||:!!.!.|||!!:.!!|||!.!! !|| ysPheLeuArgValIle***Phe***GluTrpGlnAsnSerAspThrIleAlaMetLe 301661 : AGTTTTTACGAGTAATTTGATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTT : 301717 314 : uThrTyrCysLeuPhePheIleSerLeuThrPheAsnIlePheIleLeuCysTyrIle : 332 ||||!:!! ! !.!.!!.! |||!!!||||||||||||||||||!!!||||||||| uThrPhePheThrLeuLeuThrSerPheThrPheAsnIlePheIlePheCysTyrIle 301718 : GACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATC : 301774 333 : GlyGluIleLeuSerGluGln >>>> Target Intron 2 >>>> CysGlnAs : 342 ||||||||||||||||||||| 80 bp |||....! GlyGluIleLeuSerGluGln++ ++CysSerGl 301775 : GGCGAGATTCTTTCCGAACAGgt.........................agTGTAGCCA : 301884 343 : nValGlyLeuSerAlaCysMetIleAspTrpTyrArgPheArgGlnLysLysAlaLeu : 361 .:!!|||! !:!!:!!! ! !||||||||||||!.!!!.! ! !|||!:!|||! ! nIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyr 301885 : AATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATAC : 301941 362 : GlyLeuIleLeuIleValAlaIleSerAsnSerSerThrLysLeuThrAlaGlyLysL : 381 ! !|||||||||:!! !!.!||||||.!.! ! !! !!||||||||||||||||||: AspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGlyLysI 301942 : GATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAA : 302001 382 : euValGluLeuSerLeuSerAsnPheCysSerVal : 392 !!:!!!!:|||||||||!:!!..||| !!|||||| leIleAspLeuSerLeuAsnThrPheSerSerVal 302002 : TAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: gi|383850736|ref|XP_003700932.1| 169 392 . KQ414889.1 300186 302036 + 358 M 73 219 G 1 0 M 6 18 G 2 0 M 17 51 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 70 210 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300187 302036 358 + . gene_id 16 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300187 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300187 300476 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300187 302036 358 + . alignment_id 16 ; Query gi|383850736|ref|XP_003700932.1| ; Align 300187 170 219 ; Align 300406 244 18 ; Align 300424 252 51 ; Align 301588 270 210 ; Align 301878 340 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 332 Query range: 9 -> 240 Target range: 289720 -> 290401 10 : GluAsnAspTrpMetTyrSerIleGlnMetAsnArgTrpPheLeuLysProIleGlyV : 29 |||!..||| |||!!!.!!:!!:!: !!.!|||.!!|||||||||||||||: GluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyM 289721 : GAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCA : 289778 30 : alTrpProLeuSerLeuSer<->ValThrThrPheGlyLysLeuAsnSerIleIleLe : 47 !!!::|||!!! !!!!||| !.!!:!! ! !! !::! ! |||:!::!:|| etTyrProPheValPheSerArgAlaSerArgArgGluArgThrAlaSerValLeuLe 289779 : TGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCT : 289835 48 : uAlaLeuIleSerSerPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThr : 66 | !|||:!!!!!!!!! :!!:!! !|||:!!:!!||||||! !::!! ! !..! uIleLeuValCysCysSerIleLeuGlnPheIleIleValProPheSerHisHisVal 289836 : GATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTT : 289892 67 : LeuLeuAspLysThrGlyAspLeuAspThrLysValLysMetIleGlyProLeuSerP : 86 |||!!! !.. !..!|||:!!:!!||| ||||||! :!!|||||||||!!!| LeuPhe---SerAspAsnAspMetAsnThrPheValLysAsnLeuGlyProLeuThrP 289893 : CTATTC---AGCGACAACGACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGT : 289949 87 : heCysMetMetSerThrPheLysTyrTyrIleLeuAlaSerArgGlyGlyLysIleSe : 105 |||||:!!! !!! !|||||||||! ! !!!!::!! !!:!|||..! !|||.! heCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGlySerAlaIleGl 289950 : TCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGG : 290006 106 : rGluCysIleGluSerMetArgSerAspTrpAlaLysThrArgSerAlaGlyTyrGlu : 124 !...|||:!::!! !!!:..!!!!|||||| !! ! !|||..! ||| yArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAsp---------Glu 290007 : TCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGAC---------GAG : 290054 125 : GluAspArgGluIleIleIleAspCysAlaArgValGlyArgSerIleAlaIleIleC : 144 !!: !!|||! |||!!::!! ! !!.!! !:!!.!!|||!:!:!! !! !:!:| AspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysLeuC 290055 : GATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAACTGT : 290114 145 : ysAlaGlyPheMetTyrSerGlyGlyCysPheTyrThrAlaValMetProLeuTyrSe : 163 ||||| !|||:!!|||! !|||||| ! !|||!.!.!!|||!!:||||||!:!|| ysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPheSe 290115 : GCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTTCTC : 290171 164 : rLysArgThrGluIleIleAspAsnGluThrValArgSerGlnThrPheProIleTyr : 182 ||||!:!!:! :!:! !! !|||! !|||:!!||| !!! !|||!:!||| !||| rLysLysSer---ValAsnGlyAsnValThrIleArgProLeuThrTyrProGlyTyr 290172 : GAAGAAGAGC---GTGAACGGTAACGTGACTATCAGACCTCTAACTTATCCCGGTTAC : 290225 183 : ArgArgLeuLeuAspProArgThrThrProSerValGluIleValGlnPheMetGlnC : 202 ..!..!!!!!!!||| !!:!! !!:!|||:!! !||||||||| ! !|||!!.| GluGluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetHisC 290226 : GAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACT : 290285 203 : ysLeuAlaAlaPheValMetTyrSerValThrValGlySerCysSerLeuAlaAlaVa : 221 ||:!! !!.!.!.:!!! ! !:!:!!|||:!!!.!:!!! !||||||.!!.!!:! ysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIl 290286 : GTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGAT : 290342 222 : lPheValMetHisAlaCysGlyGlnPheArgIleLeuValMetLysLeuGlnArgLeu : 240 !|||!.!! |||.!!|||||||||.!!!:!|||! !..!! !::!|||:!! !||| ePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAspLeu 290343 : CTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTG : 290399 vulgar: gi|383850736|ref|XP_003700932.1| 9 240 . KQ414889.1 289720 290401 + 332 M 26 78 G 0 3 M 33 99 G 1 0 M 51 153 G 3 0 M 43 129 G 1 0 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289721 290401 332 + . gene_id 17 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289721 290401 . + . KQ414889.1 exonerate:protein2genome:local exon 289721 290401 . + . insertions 3 ; deletions 5 KQ414889.1 exonerate:protein2genome:local similarity 289721 290401 332 + . alignment_id 17 ; Query gi|383850736|ref|XP_003700932.1| ; Align 289721 10 78 ; Align 289802 36 99 ; Align 289901 70 153 ; Align 290054 124 129 ; Align 290183 168 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 264 Query range: 294 -> 405 Target range: 305076 -> 305928 295 : PheLeuGlyTyrTyrLeuLeuThrGluTrpGluGlnSerGluAlaIleGlyThrLeuT : 314 |||||| |||||| !!!:||||||...|||.!..!!:!!.!! ! !| PheLeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrT 305077 : TTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAA : 305134 315 : hrTyrCysLeuPhePheIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGl : 333 ||||| :!!!!..!.||||||:!!|||||||||||||||||||||||||||||||| hrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGl 305135 : CATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGG : 305191 334 : yGluIleLeuSerGluGlnCys{Gl} >>>> Target Intron 1 >>>> {n} : 341 ||||||||||! !|||:!! {..} 413 bp {.} yGluIleLeuMetGluLysVal{Se}-+ ++{r} 305192 : TGAGATTCTTATGGAAAAGGTG{ag}tt.........................ag{T} : 305630 342 : AsnValGlyLeuSerAlaCysMetIleAspTrpTyrArgPheArgGlnLysLysAlaL : 361 !:!||||||||||||..!! !||||||..!||||||!.!!!.! ! |||! ! !! SerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleH 305631 : AGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATAC : 305688 362 : euGlyLeuIleLeuIleValAlaIleSerAsnSerSerThrLysLeuThrAlaGlyLy : 380 !|||||||||||||||:!!|||!!:|||!:!!:! !!.!!|||:!!!:!|||||||| isGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLy 305689 : ATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAA : 305745 381 : sLeuValGluLeuSerLeuSerAsnPheCysSer >>>> Target Intron 2 > : 392 |:!!|||!!:||||||||||||!..||| ! !:! 106 bp sValValAspLeuSerLeuSerThrPheGlyAsn++ 305746 : AGTAGTTGATTTATCTTTATCCACATTTGGAAACgt...................... : 305783 393 : >>> ValPheLysSerSerLeuAlaTyrLeuSerLeuLeuArgThr : 405 |||.!.|||!!!||||||||||||||||||!!!||||||||| ++ValLeuLysThrSerLeuAlaTyrLeuSerPheLeuArgThr 305784 : ...agGTTCTGAAAACGTCATTAGCGTATTTAAGTTTCCTTCGGACT : 305928 vulgar: gi|383850736|ref|XP_003700932.1| 294 405 . KQ414889.1 305076 305928 + 264 M 46 138 S 0 2 5 0 2 I 0 409 3 0 2 S 1 1 M 50 150 5 0 2 I 0 102 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305077 305928 264 + . gene_id 18 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305077 305216 . + . KQ414889.1 exonerate:protein2genome:local exon 305077 305216 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305217 305218 . + . intron_id 1 ; splice_site "tt" KQ414889.1 exonerate:protein2genome:local intron 305217 305629 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305628 305629 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305630 305780 . + . KQ414889.1 exonerate:protein2genome:local exon 305630 305780 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305781 305782 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305781 305886 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 305885 305886 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305887 305928 . + . KQ414889.1 exonerate:protein2genome:local exon 305887 305928 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305077 305928 264 + . alignment_id 18 ; Query gi|383850736|ref|XP_003700932.1| ; Align 305077 295 138 ; Align 305631 342 150 ; Align 305887 392 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 258 Query range: 302 -> 407 Target range: 228247 -> 230518 303 : GluTrpGluGlnSerGluAlaIleGlyThrLeuThrTyrCysLeuPhePheIleSerL : 322 ||||||.!.! !!.!||| !! ! !.!!:!!||||||! !!!..!!:!!|||! GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerP 228248 : GAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCT : 228305 323 : euThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuSerGluGln >>> : 340 !!||||||||||||||||||...||||||||||||||||||:!!:!!|||!!. heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluHis++ 228306 : TTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACgt... : 228361 341 : > Target Intron 1 >>>> CysGlnAsnValGlyLeuSerAlaCysMetIleA : 351 1889 bp |||::!!!.|||||| !!.!:!!! !||||||! ++CysArgLysValGlyGluLysSerTyrMetIleG 228362 : ......................agTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCG : 230281 352 : spTrpTyrArgPheArgGlnLysLysAlaLeuGlyLeuIleLeuIleValAlaIleSe : 370 !:|||||||||!!.! ! !!!.||| !||| !!! !|||||||||:!!|||!!:|| luTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 230282 : AATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTC : 230338 371 : rAsnSerSerThrLysLeuThrAlaGlyLysLeuValGluLeuSerLeuSerAsnPhe : 389 ||||!!!|||||||||!!!|||||||||!!.:!!||||||||||||:!!!:!!.!||| rAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnThrPhe 230339 : CAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACACTTTC : 230395 390 : CysSer >>>> Target Intron 2 >>>> ValPheLysSerSerLeuAlaTy : 399 !!..! 67 bp ||| !!|||!!!|||:!!!.!!: SerAsp++ ++ValValLysThrSerMetGlyPh 230396 : AGCGACgt.........................agGTCGTTAAAACGTCCATGGGTTT : 230492 400 : rLeuSerLeuLeuArgThrLeuThr : 407 !|||!:!:!!||||||||||||||| eLeuAsnMetLeuArgThrLeuThr 230493 : CTTAAACATGCTACGAACACTGACG : 230518 vulgar: gi|383850736|ref|XP_003700932.1| 302 407 . KQ414889.1 228247 230518 + 258 M 37 111 5 0 2 I 0 1885 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228248 230518 258 + . gene_id 19 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230403 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230403 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 230404 230405 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 230404 230470 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 230469 230470 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230471 230518 . + . KQ414889.1 exonerate:protein2genome:local exon 230471 230518 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228248 230518 258 + . alignment_id 19 ; Query gi|383850736|ref|XP_003700932.1| ; Align 228248 303 111 ; Align 230248 340 156 ; Align 230471 392 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 240 Query range: 302 -> 392 Target range: 219328 -> 219671 303 : GluTrpGluGlnSerGluAlaIleGlyThrLeuThrTyrCysLeuPhePheIleSerL : 322 ||||||:!!..!!:!!!:!.!! .!!.!!:!!|||||| !:!!.!..!!||||||| GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 323 : euThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuSerGluGln >>> : 340 ||||||||||||||||||||...||||||||||||||||||:!!:!!|||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln++ 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAggt... : 219442 341 : > Target Intron 1 >>>> CysGlnAsnValGlyLeuSerAlaCysMetIleA : 351 73 bp |||:::...:::||| :!!! !||||||! ++CysArgLysIleGlyGluMetSerTyrMetIleG 219443 : ......................agTGtaggaaaattggagaaatgtCGTACATGATCG : 219546 352 : spTrpTyrArgPheArgGlnLysLysAlaLeuGlyLeuIleLeuIleValAlaIleSe : 370 !:|||||||||!!.! ! !|||||| !||| !! !:!!|||! !:!!|||!!:|| luTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaMetSe 219547 : AATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTATGTC : 219603 371 : rAsnSerSerThrLysLeuThrAlaGlyLysLeuValGluLeuSerLeuSerAsnPhe : 389 ||||||||||! !|||||||||||||||!!.:!!||||||||||||:!!|||!.!||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPhe 219604 : GAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCACTTTT : 219660 390 : CysSerVal : 392 !..!||| ThrAspVal 219661 : ACCGACGTG : 219671 vulgar: gi|383850736|ref|XP_003700932.1| 302 392 . KQ414889.1 219328 219671 + 240 M 37 111 5 0 2 I 0 69 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219671 240 + . gene_id 20 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219671 240 + . alignment_id 20 ; Query gi|383850736|ref|XP_003700932.1| ; Align 219329 303 111 ; Align 219513 340 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 240 Query range: 302 -> 407 Target range: 224323 -> 224770 303 : GluTrpGluGlnSerGluAlaIleGlyThrLeuThrTyrCysLeuPhePheIleSerL : 322 ||||||......|||.!. !! !.!!.!!:!!||||||! !:!!.!..!!!!:|||| GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 323 : euThrPheAsnIlePheIleLeuCysTyrIleGlyGluIle >>>> Target Int : 336 ||||||||||||||||||||...|||||||||||||||:!: 65 bp euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeu++ 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGgt............... : 224425 337 : ron 1 >>>> LeuSerGluGlnCysGlnAsnValGlyLeuSerAlaCysMetIleA : 351 !!!! ! ||||||:::...:::||| ! !:!!! !||||||| --PhePheProGlnCysGluLysIleGlyGlnValSerTyrMetIleA 224426 : ..........taTTTTTTCCtcagtgtgaaaaaattggacaAGTGTCGTACATGATCG : 224533 352 : spTrpTyrArgPheArgGlnLysLysAlaLeuGlyLeuIleLeuIleValAlaIleSe : 370 |||||||||||!!.! ! !!!.||| !||| !!! !|||||||||:!!|||!!:|| spTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 224534 : ACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGATGTC : 224590 371 : rAsnSerSerThrLysLeuThrAlaGlyLysLeuValGluLeuSerLeuSerAsnPhe : 389 ||||||||||! !|||||||||||||||!!.:!!|||||||||!!!|||!!!!.!||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThrPhe 224591 : CAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACTTTC : 224647 390 : CysSer >>>> Target Intron 2 >>>> ValPheLysSerSerLeuAlaTy : 399 !!..! 67 bp ||| !!|||!!!:!!:!!|||!: GlyAsp++ ++ValValLysThrAlaValAlaPh 224648 : GGTGACgt.........................agGTTGTCAAGACAGCTGTCGCATT : 224744 400 : rLeuSerLeuLeuArgThrLeuThr : 407 !|||!:!:!!||||||||||||||| eLeuAsnValLeuArgThrLeuThr 224745 : TTTGAACGTGTTACGAACATTGact : 224770 vulgar: gi|383850736|ref|XP_003700932.1| 302 407 . KQ414889.1 224323 224770 + 240 M 33 99 5 0 2 I 0 61 3 0 2 M 56 168 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224770 240 + . gene_id 21 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224324 224422 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224422 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224423 224424 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224423 224487 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224486 224487 . + . intron_id 0 ; splice_site "TA" KQ414889.1 exonerate:protein2genome:local cds 224488 224655 . + . KQ414889.1 exonerate:protein2genome:local exon 224488 224655 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224656 224657 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224656 224722 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 224721 224722 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 224723 224770 . + . KQ414889.1 exonerate:protein2genome:local exon 224723 224770 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224770 240 + . alignment_id 21 ; Query gi|383850736|ref|XP_003700932.1| ; Align 224324 303 99 ; Align 224488 336 168 ; Align 224723 392 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 5 -> 198 Target range: 294660 -> 295230 6 : AspLeuSerLeuGluAsnAspTrpMetTyrSerIleGlnMetAsnArgTrpPheLeuL : 25 ||| !!!! !..!|||||| ! ! !!|||:!!:!! !||| !!.!.|||| AspAspThrAsnArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuL 294661 : GACGATACTAACAGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGA : 294718 26 : ysProIleGlyValTrpProLeuSerLeuSerValThrThr<->PheGlyLysLeuAs : 43 |||||||||||:!!|||||||||! !! !||| !|||!:! .!...!|||:!! ysProIleGlyLeuTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLe 294719 : AACCGATCGGTCTTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCT : 294775 44 : nSerIleIleLeuAlaLeuIleSerSerPheLeuIleGlyPheLeuLeuValProCys : 62 !|||||||||||| ! ! !!!!!!!!. !:!! !|||:!!|||||||||||| uSerIleIleLeuIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCys 294776 : TTCGATAATTCTGATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGC : 294832 63 : AlaLeuCysThrLeuLeuAspLysThrGlyAspLeuAspThrLysValLysMetIleG : 82 !.!! !! ! !:!!!!! ! ... :::::: |||:!!|||:!::!:| GlyTyrPheCysValPhe---HisValLysAsnValLysLeuLysMetLysLeuLeuG 294833 : GGATACTTCTGTGTATTC---CACGTgaaaaacgtgaaattgaaGATGAAACTTCTGG : 294889 83 : lyProLeuSerPheCysMetMetSerThrPheLysTyrTyrIleLeuAlaSerArgGl : 101 |||||:!! !!:!! !|||:!:|||! !.!!!:!||| ! !|||!.!! !!:! lyProValLeuTyrSerMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysTh 294890 : GTCCGGTACTATACTCTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAAC : 294946 102 : yGlyLysIleSerGluCysIleGluSerMetArgSerAspTrpAlaLysThrArgSer : 120 ! ! !.!!!.!.!.|||||||||..!!!:..!!:!|||||| !:!! ! rProAlaPheLysHisCysIleGluAspIleGluAsnAspTrp---------LysLeu 294947 : GCCCGCGTTCAAGCATTGCATCGAAGACATAGAGAACGATTGG---------AAGTTG : 294994 121 : AlaGlyTyrGluGluAspArgGluIleIleIleAspCysAlaArgValGlyArgSerI : 140 !! ! !! !||| !!|||! !|||!!:||| ! !|||! !||| !!:!!!!! IleAspAsnProGluHisArgAlaIleMetIleLysAsnAlaMetValThrGlnArgM 294995 : ATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCGATGGTCACGCAGAGGA : 295054 141 : leAlaIleIleCysAlaGlyPheMetTyrSerGlyGlyCysPheTyrThrAlaValMe : 159 !:.!!:!! !! !.!! !.!.!!:||||||..!!.! ! ||| !|||:!!:: etThrValAlaPheThrIleIleIleTyrSerSerAlaValSerTyrHisAlaIleVa 295055 : TGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGTCGTATCACGCCATTGt : 295111 160 : tProLeuTyrSerLysArgThrGluIleIleAspAsnGluThrValArgSerGlnThr : 178 :|||...:::|||... !|||! !! ! |||.!.|||:!!|||:!! ! !! lProPhePheSerAsnAlaLeuGluAsnLysLysAsnAsnThrIleArgAlaLeuPro 295112 : gccatttttttcaaacgctTTGGAGAACAAGAAGAATAATACGATTCGTGCGTTACCA : 295168 179 : PheProIleTyrArgArgLeuLeuAspProArgThrThrProSerValGluIleValG : 198 .!!||| !|||..! !!!!:!!||| !! !:!!!:!|||!!! !||||||:!!: IleProGlyTyrGluLeuPheValAspAlaTyrSerSerProThrTyrGluIleIleA 295169 : ATTCCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGTCCTACCTACGAGATCATAA : 295228 199 : ln : 198 :! rg 295229 : GA : 295230 vulgar: gi|383850736|ref|XP_003700932.1| 5 198 . KQ414889.1 294660 295230 + 205 M 33 99 G 0 3 M 30 90 G 1 0 M 46 138 G 3 0 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294661 295230 205 + . gene_id 22 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294661 295230 . + . KQ414889.1 exonerate:protein2genome:local exon 294661 295230 . + . insertions 3 ; deletions 4 KQ414889.1 exonerate:protein2genome:local similarity 294661 295230 205 + . alignment_id 22 ; Query gi|383850736|ref|XP_003700932.1| ; Align 294661 6 99 ; Align 294763 39 90 ; Align 294853 70 138 ; Align 294991 119 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 192 Query range: 5 -> 240 Target range: 194144 -> 194831 6 : AspLeuSerLeuGluAsnAspTrpMetTyrSerIleGlnMetAsnArgTrpPheLeuL : 25 :!!:!!!:!! !:!! ||| !|||:!!:!!!:!:!: !:! !.!!|||! AsnValAsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuLeuT 194145 : AACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAA : 194202 26 : ysProIleGlyValTrpProLeuSerLeuSerValThrThrPheGlyLysLeuAsnSe : 44 !|||||||||:!!|||||| !..! !|||:!! ! ! ! !::!||| !:! hrProIleGlyIleTrpProArgGluAspSerLeuArgAspArgValArgLeuPheAl 194203 : CACCGATCGGTATCTGGCCAAGGGAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGC : 194259 45 : rIleIleLeuAlaLeuIleSerSerPheLeuIleGlyPheLeuLeuValProCysAla : 63 ! !! ! !!.!:!!.!!:!! |||!!: !!||||||||||||||| !!.! aGlnThrGlyValValPheAla------LeuMetCysPheLeuLeuValProHisVal 194260 : TCAAACTGGCGTGGTCTTCGCT------TTGATGTGCTTTCTACTGGTACCTCACGTG : 194310 64 : LeuCysThrLeuLeuAspLysThrGlyAspLeuAspThrLysValLysMetIleGlyP : 83 :!!! !|||! !!!!||| !! !|||||| ! ! ! :!!|||:!:|||!.! IleTyrThrTyrPheAsp---CysGluAspLeuThrArgTyrMetLysValIleAlaA 194311 : ATCTACACTTACTTCGAC---TGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGG : 194367 84 : roLeuSerPheCysMetMetSerThrPheLysTyrTyrIleLeuAlaSerArgGlyGl : 102 !!! ! !||| !!:!!:!!:!!! !.!!|||!:!!::! :!! ! !!.! !! laGlnValPheSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnArgLy 194368 : CGCAAGTGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAA : 194424 103 : yLysIleSerGluCysIleGluSerMetArgSerAspTrpAlaLysThrArgSerAla : 121 !:!!|||!!! |||:!: !..!|||..!!!!.!.!:: |||..!!.! sGluIleArgPheCysLeuLeuGluMetGluThrGlnTyr---------ArgAspVal 194425 : AGAGATCAGATTCTGTCTGCTGGAGATGGAGACGCAGTAC---------AGAGACGTG : 194472 122 : GlyTyrGluGluAspArgGluIleIleIleAspCysAlaArgValGlyArgSerIleA : 141 ! !! !||||||||||||:!!:!:!!:! :!!||||||!:!:!!||||||! !.!!. GluCysGluGluAspArgGlnValMetThrAsnCysAlaLysIleGlyArgPhePheT 194473 : GAGTGCGAGGAGGATCGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTA : 194532 142 : laIleIleCysAlaGlyPheMetTyrSerGlyGlyCysPheTyrThrAlaValMetPr : 160 !!! !:!:! ! !|||.!! |||.!!|||!.!! ||| ! !:!!:!:|| hrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuPr 194533 : CTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACC : 194589 161 : oLeuTyrSerLysArgThrGluIleIleAspAsnGluThrValArgSerGlnThrPhe : 179 |||| |||:!!|||! !! ! ||||||...||| !! ! !!! ! !!!:! oLeuMetSerGluArgIleValLysGluAspAsnSerThrGlnIleProLeuProTyr 194590 : TCTGATGTCGGAGAGGATTGTCAAGGAGGATAACAGTACTCAGATACCTCTGCCATAT : 194646 180 : ProIleTyrArgArgLeuLeuAspProArgThrThrProSerValGluIleValGlnP : 199 !! ! !! ! !!!!!!!! !..! !:!!|||! ! !||||||..! LeuSerAsnTyrValPhePheAlaIleGluAspSerProIleTyrGluIleThrPheV 194647 : TTGAGCAACTATGTTTTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCG : 194706 200 : heMetGlnCysLeuAlaAlaPheValMetTyrSerValThrValGlySerCysSerLe : 218 !! !||| ||| !::! !:!!!!:! |||..!!.! !|||! !! !||||| alSerGlnIleLeuIleSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLe 194707 : TCTCGCAGATACTGATTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTT : 194763 219 : uAlaAlaValPheValMetHisAlaCysGlyGlnPheArgIleLeuValMetLysLeu : 237 |!.!|||..!.!!:!!||||||..!|||||| !|||..!:!: ! !! !:!:!! uValAlaThrIleIleMetHisCysCysGlyLeuPheGluValThrSerArgArgMet 194764 : GGTCGCTACTATTATTATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGATG : 194820 238 : GlnArgLeu : 240 :!!! !:!! GluThrIle 194821 : GAGACTATT : 194831 vulgar: gi|383850736|ref|XP_003700932.1| 5 240 . KQ414889.1 194144 194831 + 192 M 46 138 G 2 0 M 16 48 G 1 0 M 45 135 G 3 0 M 122 366 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194145 194831 192 + . gene_id 23 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194145 194831 . + . KQ414889.1 exonerate:protein2genome:local exon 194145 194831 . + . insertions 0 ; deletions 6 KQ414889.1 exonerate:protein2genome:local similarity 194145 194831 192 + . alignment_id 23 ; Query gi|383850736|ref|XP_003700932.1| ; Align 194145 6 138 ; Align 194283 54 48 ; Align 194331 71 135 ; Align 194466 119 366 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 187 Query range: 302 -> 392 Target range: 277371 -> 277713 303 : GluTrpGluGlnSerGluAlaIleGlyThrLeuThrTyrCysLeuPhePheIleSerL : 322 ||||||....!.|||!!:!.! !! ! !|||:!!! !:!!.!!.!!||||||: GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 323 : euThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuSerGluGln >>> : 340 !: |||||||||||| !:!!|||||||||||||||||||||!!!|||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 341 : > Target Intron 1 >>>> CysGlnAsnValGlyLeuSerAlaCysMetIleA : 351 72 bp |||:!!!!.|||||| ! !!.!! !|||! : ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 352 : spTrpTyrArgPheArgGlnLysLysAlaLeuGlyLeuIleLeuIleValAlaIleSe : 370 !!|||||| !!!.! !.!.||| ! !|||..!|||:!!||||||:!!:!!! !|| snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 371 : rAsnSerSerThrLysLeuThrAlaGlyLysLeuValGluLeuSerLeuSerAsnPhe : 389 |!:! |||:::|||||||||||||||:::::::::|||:!!! !!..||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 390 : CysSerVal : 392 !!..!||| GlyAspVal 277703 : GGCGATGTA : 277713 vulgar: gi|383850736|ref|XP_003700932.1| 302 392 . KQ414889.1 277371 277713 + 187 M 37 111 5 0 2 I 0 68 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277713 187 + . gene_id 24 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277713 187 + . alignment_id 24 ; Query gi|383850736|ref|XP_003700932.1| ; Align 277372 303 111 ; Align 277555 340 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 334 -> 392 Target range: 214848 -> 215022 335 : IleLeuSerGluGlnCysGlnAsnValGlyLeuSerAlaCysMetIleAspTrpTyrA : 354 |||:!!! !:!!||||||:!!!!.|||||| ! !:!!! !||||||!!:||||||| IleMetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrA 214849 : ATTATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACC : 214906 355 : rgPheArgGlnLysLysAlaLeuGlyLeuIleLeuIleValAlaIleSerAsnSerSe : 373 ||!!.! ! !!.||| !||| !!! !|||||||||:!!|||!!:||||||||||| rgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSe 214907 : GATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATC : 214963 374 : rThrLysLeuThrAlaGlyLysLeuValGluLeuSerLeuSerAsnPheCysSerVal : 392 |..!|||!!!|||||||||!!.:!!||||||||||||:!!|||!.!||| !!|||||| rValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214964 : CGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215020 vulgar: gi|383850736|ref|XP_003700932.1| 334 392 . KQ414889.1 214848 215022 + 153 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214849 215022 153 + . gene_id 25 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214849 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214849 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214849 215022 153 + . alignment_id 25 ; Query gi|383850736|ref|XP_003700932.1| ; Align 214849 335 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 302 -> 397 Target range: 254071 -> 254448 303 : GluTrpGluGlnSerGluAlaIleGlyThrLeuThrTyrCysLeuPhePheIleSerL : 322 |||||| !:!!|||!!:||| ! ! !!!!|||||| !:!! .!!:!!:!!: GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaV 254072 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTG : 254129 323 : euThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuSerGluGlnCysGl : 341 !!..! ||| |||::::::|||||||||.!!!!:! |||!!!|||||| || alValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGlnValGl 254130 : TTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGGTACA : 254186 342 : nAsn{V} >>>> Target Intron 1 >>>> {al}GlyLeuSerAlaCysMet : 349 |.!.{:} 92 bp {!!}||| ! !!.!! !||| nGlu{I}-+ ++{le}GlyGluValValTyrMet 254187 : AGAG{A}ct.........................ag{TT}GGTGAAGTGGTTTACATG : 254302 350 : IleAspTrpTyrArgPheArgGlnLysLysAlaLeuGlyLeuIleLeuIleValAlaI : 369 ! !||||||||| !.!.! !|||!:!!:! !|||! !||||||||||||:!!.!! ThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrA 254303 : ACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACAC : 254362 370 : leSerAsnSerSerThrLysLeuThrAlaGlyLysLeuValGluLeuSerLeuSerAs : 388 !|||||| ! !..!:!!:!!||||||||||||::: ...:::||||||! !!. rgSerAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrTh 254363 : GATCGAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACAC : 254419 389 : nPheCysSerValPheLysSerSerLeu : 397 .||| !!..!||| !:!!!!!!:!||| rPheGlyAspValSerGluThrAsnLeu 254420 : GTTCGGCGATGTAAGTGAAACTAATCTT : 254448 vulgar: gi|383850736|ref|XP_003700932.1| 302 397 . KQ414889.1 254071 254448 + 148 M 40 120 S 0 1 5 0 2 I 0 88 3 0 2 S 1 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254072 254448 148 + . gene_id 26 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254072 254192 . + . KQ414889.1 exonerate:protein2genome:local exon 254072 254192 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254193 254194 . + . intron_id 1 ; splice_site "CT" KQ414889.1 exonerate:protein2genome:local intron 254193 254284 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254283 254284 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254285 254448 . + . KQ414889.1 exonerate:protein2genome:local exon 254285 254448 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254072 254448 148 + . alignment_id 26 ; Query gi|383850736|ref|XP_003700932.1| ; Align 254072 303 120 ; Align 254287 344 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 3 -> 114 Target range: 299656 -> 299989 4 : LeuSerAspLeuSerLeuGluAsnAspTrpMetTyrSerIleGlnMetAsnArgTrpP : 23 |||!!!:!!! ! !! !:!!|||||| |||!!!:!:|||||| !!:!|||! LeuArgAsnTyrHisTyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpL 299657 : TTGAGGAATTACCATTACCAAAATGACATACATTACACGCTGCAAATGTGCCAATGGT : 299714 24 : heLeuLysProIleGlyValTrpPro<->LeuSerLeuSerValThrThrPheGlyLy : 41 !.|||||||||||||||||||||! ! |||..!! ! !! !!:!! !.!.! ! ! euLeuLysProIleGlyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHi 299715 : TGTTGAAACCTATCGGAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACA : 299771 42 : sLeuAsnSerIleIleLeuAlaLeuIleSerSerPheLeuIleGlyPheLeuLeuVal : 60 ||| !||||||:!!||| ! !|||!!!! !! ! !:!: !|||:!!:!!:!! sLeuValSerIleValLeuMetThrIleCysPheSerSerLeuPhePheIleValLeu 299772 : CCTCGTCTCGATCGTTCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTG : 299828 61 : ProCysAlaLeuCysThrLeuLeuAspLysThrGlyAspLeuAspThrLysValLysM : 80 |||! !!.!! !! !! !!!!!!!! :!!! ! ..!:!! !!..!|||||||||: ProSerGlyHisTyrIlePhePheAlaGluLys---SerIleHisValLysValLysV 299829 : CCATCCGGTCATTACATCTTCTTCGCGGAGAAA---AGTATACACGTCAAGGTGAAAG : 299885 81 : etIleGlyProLeuSerPheCysMetMetSerThrPheLysTyrTyrIleLeuAlaSe : 99 !:.!!||||||:!!.!!||||||:!: |||! ! !!||||||! ! !|||..! alPheGlyProValGlyPheCysLeuSerSerIleValLysTyrCysTyrLeuCysLe 299886 : TATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCT : 299942 100 : rArgGlyGlyLysIleSerGluCysIleGluSerMetArgSerAsp : 114 !!.!|||||| !.!!..!..!||||||:!! !:!:..!!!!||| uAsnGlyGlyAlaPheGluArgCysIleGlnHisValGluArgAsp 299943 : GAACGGTGGCGCGTTCGAACGATGCATCCAACACGTCGAGAGAGAC : 299989 vulgar: gi|383850736|ref|XP_003700932.1| 3 114 . KQ414889.1 299656 299989 + 146 M 28 84 G 0 3 M 40 120 G 1 0 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299657 299989 146 + . gene_id 27 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299657 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299657 299989 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 299657 299989 146 + . alignment_id 27 ; Query gi|383850736|ref|XP_003700932.1| ; Align 299657 4 84 ; Align 299744 32 120 ; Align 299864 73 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 268 -> 339 Target range: 214459 -> 214740 269 : ArgPheIleSerArgValGluAspLeuLeuAsnGluIleCysLeuValGluValValG : 288 ||||||:!!..!! !|||||| ! !|||...:!!:!!! !!!!!.!|||:!!:!!! ArgPheLeuGluLeuValGluLysAlaLeuArgGlnValSerPheAlaGluLeuLeuV 214460 : AGATTCTTAGAGCTCGTGGAGAAAGCACTTCGGCAAGTATCTTTCGCTGAATTATTAG : 214517 289 : lyCysThr >>>> Target Intron 1 >>>> MetAsnIleCysPheLeuGly : 297 !|||||| 68 bp ...::: alCysThr++ +-AsnIleSerAsnIleValLys 214518 : TATGCACGgt.........................aaaatatatcaaacatcgtcaaa : 214612 298 : TyrTyrLeuLeuThrGluTrpGluGlnSerGluAlaIleGlyThrLeuThrTyrCysL : 317 ::: :::||| ||||||.!...!!:!.!. !! ! !|||:!!|||||| : PheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValV 214613 : tttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGG : 214672 318 : euPhePheIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLe : 336 !!!!.!:!|||||||||||||||||||||||||||...|||||||||||||||:!!:! alLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuVa 214673 : TGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGGCGAGCTTGT : 214729 337 : uSerGluGln : 339 !||||||||| lSerGluGln 214730 : GTCTGAACAG : 214740 vulgar: gi|383850736|ref|XP_003700932.1| 268 339 . KQ414889.1 214459 214740 + 133 M 22 66 5 0 2 I 0 64 3 0 2 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214460 214740 133 + . gene_id 28 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214460 214525 . + . KQ414889.1 exonerate:protein2genome:local exon 214460 214525 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214526 214527 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214526 214593 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214592 214593 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 214594 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214594 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214460 214740 133 + . alignment_id 28 ; Query gi|383850736|ref|XP_003700932.1| ; Align 214460 269 66 ; Align 214594 291 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 175 -> 243 Target range: 202685 -> 202889 176 : SerGlnThrPheProIleTyrArgArgLeuLeuAspProArgThrThrProSerValG : 195 ||| !|||||| !!.!!! !! !:!!:!!||| !||| !!:!||| ! !| SerValThrPheSerPheSerGlyPheIleIleAspValArgTyrSerProValAsnG 202686 : AGTGTGACGTTCTCCTTCTCAGGATTTATCATTGATGTTAGATACAGTCCTGTGAACG : 202743 196 : luIleValGlnPheMetGlnCysLeuAlaAlaPheValMetTyrSerValThrValGl : 214 ||||| !! ! !!:!:! !:!!|||!.!.!!:!!!!::!!.!!||||||||||| luIlePhePheSerIleArgIleValAlaValIleLeuIleHisGlyValThrValGl 202744 : AGATCTTCTTCTCGATTCGAATCGTAGCTGTCATCCTAATTCACGGTGTCACTGTAGG : 202800 215 : ySerCysSerLeuAlaAlaValPheValMetHisAlaCysGlyGlnPheArgIleLeu : 233 |:!!|||!!!|||.!!|||:!!|||!.!:!:|||! !|||||||||.!. !:!!||| yAlaCysCysLeuThrAlaLeuPheAlaValHisAspCysGlyGlnMetAspValLeu 202801 : AGCTTGTTGCTTGACAGCGTTGTTTGCGGTTCACGATTGCGGCCAGATGGACGTTTTG : 202857 234 : ValMetLysLeuGlnArgLeuValAspGly : 243 :!! !|||:!!!.!|||:!!|||||| MetAlaTrpLeuGluHisLeuMetAspGly 202858 : ATGGCCTGGCTGGAACATTTGATGGATGGT : 202889 vulgar: gi|383850736|ref|XP_003700932.1| 175 243 . KQ414889.1 202685 202889 + 127 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202686 202889 127 + . gene_id 29 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202686 202889 . + . KQ414889.1 exonerate:protein2genome:local exon 202686 202889 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202686 202889 127 + . alignment_id 29 ; Query gi|383850736|ref|XP_003700932.1| ; Align 202686 176 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 338 -> 398 Target range: 238625 -> 238805 339 : GlnCysGlnAsnValGlyLeuSerAlaCysMetIleAspTrpTyrArgPheArgGlnL : 358 |||||| !!!.|||||| ! !!.!! !|||! !||||||||| !.!.! !|||! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 359 : ysLysAlaLeuGlyLeuIleLeuIleValAlaIleSerAsnSerSerThrLysLeuTh : 377 :!!:! !|||! !||||||||||||:!! ! !|||||| ! !..!|||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 378 : rAlaGlyLysLeuValGluLeuSerLeuSerAsnPheCysSerValPheLysSerSer : 396 ||||||||||:!!:!!.!.:!!||||||! !!..||| !!..!||| !:!!!!!!:! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 397 : LeuAla : 398 |||||| LeuAla 238798 : CTTGCT : 238805 vulgar: gi|383850736|ref|XP_003700932.1| 338 398 . KQ414889.1 238625 238805 + 123 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238805 123 + . gene_id 30 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238805 123 + . alignment_id 30 ; Query gi|383850736|ref|XP_003700932.1| ; Align 238626 339 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 302 -> 339 Target range: 291368 -> 291479 303 : GluTrpGluGlnSerGluAlaIleGlyThrLeuThrTyrCysLeuPhePheIleSerL : 322 |||||||||...|||!!::!!||||||! !||||||||| ! !.!!.!!! !|||! GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 323 : euThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuSerGluGln : 339 !!||||||||||||.!.|||!!!||||||:!!||||||:!!||| !! !||| heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAG : 291479 vulgar: gi|383850736|ref|XP_003700932.1| 302 339 . KQ414889.1 291368 291479 + 116 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 291479 116 + . gene_id 31 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 291479 116 + . alignment_id 31 ; Query gi|383850736|ref|XP_003700932.1| ; Align 291369 303 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 302 -> 339 Target range: 272836 -> 272947 303 : GluTrpGluGlnSerGluAlaIleGlyThrLeuThrTyrCysLeuPhePheIleSerL : 322 |||||| .!. !!!: ! .!! ! !||||||! !:!!.!..!!||||||: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 323 : euThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuSerGluGln : 339 !:||||||||||||||||||::!|||||||||||||||||||||!!!|||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGG : 272947 vulgar: gi|383850736|ref|XP_003700932.1| 302 339 . KQ414889.1 272836 272947 + 109 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 272947 109 + . gene_id 32 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 272947 109 + . alignment_id 32 ; Query gi|383850736|ref|XP_003700932.1| ; Align 272837 303 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 350 -> 400 Target range: 292425 -> 292575 351 : AspTrpTyrArgPheArgGlnLysLysAlaLeuGlyLeuIleLeuIleValAlaIleS : 370 !!:||||||!.!.!.! !::!::!||||||! !! !:!!:!!|||:!::!!||||||! GluTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIleT 292426 : GAATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAA : 292483 371 : erAsnSerSerThrLysLeuThrAlaGlyLysLeuValGluLeuSerLeuSerAsnPh : 389 !!!!. ! !!! !||||||||||||||||||:!! !!! |||||||||!:!!.!|| hrLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPh 292484 : CGAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTT : 292540 390 : eCysSerValPheLysSerSerLeuAlaTyrLeu : 400 | !!:!!||| !:!!|||!.!|||!.!! :!! eGlyAlaValArgGluSerLysLeuValLeuIle 292541 : TGGCGCTGTACGTGAATCAAAACTAGTCTTGATA : 292575 vulgar: gi|383850736|ref|XP_003700932.1| 350 400 . KQ414889.1 292425 292575 + 102 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292426 292575 102 + . gene_id 33 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292426 292575 . + . KQ414889.1 exonerate:protein2genome:local exon 292426 292575 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292426 292575 102 + . alignment_id 33 ; Query gi|383850736|ref|XP_003700932.1| ; Align 292426 351 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1228 Query range: 14 -> 408 Target range: 217153 -> 219803 15 : AspTyrThrLysAsnValAsnLeuSerIleGlnPheSerArgTrpLeuLeuArgProV : 34 !!:||| ||||||:::|||||||||||||||!::!:!||||||||||||!:!|||: GluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProM 217154 : GAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGA : 217211 35 : alGlyValTrpProLysSerGlu<->ValThrArgIleAspLysTyrPheThrTrpLe : 52 !!|||:!!||||||!!.|||... ..!|||||| ! ||| !.!! ! || etGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLe 217212 : TGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACT : 217268 53 : uValAsnSerLeuCysSerThrLeuLeuSerPheLeuPheValProCysLeuValPhe : 71 |:!!|||:!!||||||! ! !|||:!!|||||||||||||||||||||! !:!!!:! uIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyr 217269 : GATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTAC : 217325 72 : LeuIleLeuAspValSerAspSerTyrAsnArgIleLysLeuIleGlyProLeuSerP : 91 :!!.!!|||!!:|||..!||| !|||:!!!:!:!:||||||.!!|||||||||! !| ValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIleP 217326 : GTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCT : 217385 92 : hePheLeuMetSerTyrMetLysTyrTyrLeuMetLeuLeuHisLysAsnAspIleLe : 110 ||! !:!!|||:!!!:!:!:|||||||||! !:!!:!!:!!|||||| ||||||! heCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleAr 217386 : TCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCG : 217442 111 : uLysCysValGlnGlnValGlnArgAspTrpAlaAsnAlaArgHisLeuAsnAspArg : 129 !:!!||||||::!::!:!!:!!||||||||| !|||!.!||| ! !!!.|||||| gGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArg 217443 : CGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGG : 217499 130 : AsnIleMetGlyIleAsnAlaAsnTyrGlyArgLysLeuValValValSerAlaPheP : 149 .!. ||| !:!:|||||||||!:!|||||||||||||||:!!:!!!!!.!!|||| GluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPheP 217500 : GAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCT : 217559 150 : heMetSerSerSerTyrIlePhePheTyrIleAlaMetProIleSerValGlyArgIl : 168 |||||! !|||...::::::|||:::|||||||||!!:|||||||||||||||||||| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIl 217560 : TCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAAT : 217616 169 : eProAlaValAspGlyAsnPheThrPheIleValLeuProPheProSerSerThrArg : 187 |! !:!!! !:!!||||||.!!||||||||| !||| !||||||! !!!!! ! ! eLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyr 217617 : TCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTAT : 217673 188 : IlePheAspTyrArgHisSerProPheAsnGluIlePhePheValValGlnCysLeuA : 207 |||.!!||| !|||:!!!!!||| ||||||||| ! ||| !!:!!|||! :!!| IleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleA 217674 : ATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCG : 217733 208 : laGlyThrIleLeuHisMetIleThrValGlyAlaCysSerLeuAlaAlaThrPheAl : 226 |||||.!!:!::!!||| |||||| !!.!||||||||||||||||||.!!||||| laGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAl 217734 : CTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGC : 217790 227 : aValHisAlaCysGlyGlnMetGluIleLeuMetAsnTrpLeuGluHisLeuIleSer : 245 |||||||||||||||||||!!:|||:!:|||||||||||||||:!!|||||||||..! aValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAsp 217791 : GGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGAC : 217847 246 : GlyArgValAspMetLysAspThrValAspGlyArgIleAlaSerIleValGluGlnH : 265 ||||||!.!||||||!..|||||||||||||||||||||||||||||||||...|||| GlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnH 217848 : GGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAAC : 217907 266 : isValArgIleLeu{Ar} >>>> Target Intron 1 >>>> {g}PheLeuGl : 273 ||||||||||||||{!:} 1229 bp {!}|||||| isValArgIleLeu{Ly}++ ++{s}PheLeuTh 217908 : ACGTTCGGATATTA{AA}gt.........................ag{a}tttttgaC : 219160 274 : uLeuMetGluLysLeuLeuGlnGlnIleSerCysValGluCysLeuGlyCysMetMet : 292 !|||! |||!:! !|||||||||||||||! !!.!|||! !|||||||||! ||| rLeuThrGluArgThrLeuGlnGlnIleSerPheAlaGluPheLeuGlyCysThrMet 219161 : GCTCACAGAGAGAACCCTCCAGCAAATCTCTTTCGCTGAATTTCTAGGATGCACCATG : 219217 293 : AsnLeuCysLeuLeuGlyTyrTyrCysIleMet >>>> Target Intron 2 >> : 304 :!!:!!||||||:!!||||||||| !|||:!! 76 bp AspIleCysLeuValGlyTyrTyrIleIleVal++ 219218 : GACATATGTCTCGTTGGATATTACATTATCGTGgt....................... : 219255 305 : >> GluTrpAsnProLysGluLeuThrPheSerLeuThrTyrIleLeuLeuIleSer : 321 ||||||!!. !!!!.!!::!!||| !:!!:!!|||||||||:!!|||:!!! ! ++GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIle 219256 : ..agGAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATA : 219380 322 : TyrPheGlyPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln : 341 ! !.!. |||||||||||||||||||||||||||||||||:!!|||||||||||| SerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln+ 219381 : TCCCTcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAgg : 219440 342 : >>>> Target Intron 3 >>>> CysLysLysValGlyGluValSerTyrMet : 350 73 bp |||:::|||:::||||||:::||||||||| + ++CysArgLysIleGlyGluMetSerTyrMet 219441 : t.........................agTGtaggaaaattggagaaatgtCGTACATG : 219540 351 : IleGluTrpHisArgLeuSerGlyLysLysLysLeuCysCysIleLeuIleIleAlaM : 370 |||||||||:!!||||||!!!|||||||||||||||!! !!:!!|||! !||||||| IleGluTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaM 219541 : ATCGAATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTA : 219600 371 : etSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerTh : 389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| etSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerTh 219601 : TGTCGAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCAC : 219657 390 : rPheSerAsp >>>> Target Intron 4 >>>> IleValLysThrAlaValA : 399 ||||!!!||| 87 bp :!!|||||||||||||||. rPheThrAsp++ ++ValValLysThrAlaValT 219658 : TTTTACCGACgt.........................agGTCGTTAAGACTGCAGTCA : 219774 400 : laPheLeuAsnMetLeuArgAlaLeuThr : 408 !!|||||||||:!:||||||.!!|||||| hrPheLeuAsnValLeuArgThrLeuThr 219775 : CGTTTCTGAATGTACTACGAACATTGACT : 219803 vulgar: gi|383850686|ref|XP_003700914.1| 14 408 . KQ414889.1 217153 219803 + 1228 M 27 81 G 0 3 M 228 684 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 37 111 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 83 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217154 219803 1228 + . gene_id 1 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217154 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217154 217923 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219668 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219668 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219669 219670 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219669 219755 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 219754 219755 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219756 219803 . + . KQ414889.1 exonerate:protein2genome:local exon 219756 219803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217154 219803 1228 + . alignment_id 1 ; Query gi|383850686|ref|XP_003700914.1| ; Align 217154 15 81 ; Align 217238 42 684 ; Align 219154 271 99 ; Align 219329 304 111 ; Align 219513 341 156 ; Align 219756 393 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1121 Query range: 15 -> 408 Target range: 212854 -> 215136 16 : TyrThrLysAsnValAsnLeuSerIleGlnPheSerArgTrpLeuLeuArgProValG : 35 ||| !|||...||||||||||||||| !!::!:!||||||||||||!:!|||..!| TyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrG 212855 : TACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGG : 212912 36 : lyValTrpPro<->LysSerGluValThrArgIleAspLysTyrPheThrTrpLeuVa : 53 ||:!!|||||| |||||| ! |||:!!! !|||!!:||| !!.!!.!! ! ||||| lyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIleAlaArgLeuVa 212913 : GTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGT : 212969 54 : lAsnSerLeuCysSerThrLeuLeuSerPheLeuPheValProCysLeuValPheLeu : 72 ||||!!!:!!|||! ! !|||:!!.!!!:!||| ! :!!|||||| !:!!!:!:!! lAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrVal 212970 : CAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTG : 213026 73 : IleLeuAspValSerAspSerTyrAsnArgIleLysLeuIleGlyProLeuSerPheP : 92 .!!|||||||||...::: :::......|||:!!|||.!!||| !!!!:!!|||! PheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheC 213027 : TTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTT : 213086 93 : heLeuMetSerTyrMetLysTyrTyrLeuMetLeuLeuHisLysAsnAspIleLeuLy : 111 !:!! :!! !||||||:!!! !:!!:!!|||||| :!!||||||! !! ysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgTh 213087 : GCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTAC : 213143 112 : sCysValGlnGlnValGlnArgAspTrpAlaAsnAlaArgHisLeuAsnAspArgAsn : 130 !||||||:!!!!.:!!:!! !|||||| !||| !! !||| !.!.|||!:!.!. rCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGlu 213144 : GTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAA : 213200 131 : IleMetGlyIleAsnAlaAsnTyrGlyArgLysLeuValValValSerAlaPhePheM : 150 ||||||!.!:!:||||||!:!!:!|||!:!!:!:!!|||..!:!!!!!|||||||||| IleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPhePheM 213201 : ATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCA : 213260 151 : etSerSerSerTyrIlePhePheTyrIleAlaMetProIleSerValGlyArgIlePr : 169 ||! !!!!.!!!:!! |||!:!!:!:!!!.!:!:|||||||||!.!! !!:!!!: etTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLysMetVa 213261 : TGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGT : 213317 170 : oAlaValAspGlyAsnPheThrPheIleValLeuProPheProSerSerThrArgIle : 188 !|||! !||| !||| ! ||||||! ! !:!! ! !!||| !|||! ! !||| lAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSerArgPheIle 213318 : AGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATC : 213374 189 : PheAspTyrArgHisSerProPheAsnGluIlePhePheValValGlnCysLeuAlaG : 208 !!||| !|||:!!|||||| ! |||||||||||||||:!!:!!||| !:!!|||| ValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleIleAlaG 213375 : GTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTG : 213434 209 : lyThrIleLeuHisMetIleThrValGlyAlaCysSerLeuAlaAlaThrPheAlaVa : 227 ||..!:!::!!||| |||.!!|||! !||||||||||||||||||..!|||||||| lyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPheAlaVa 213435 : GAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGT : 213491 228 : lHisAlaCysGlyGlnMetGluIleLeuMetAsnTrpLeuGluHisLeuIleSerGly : 246 |||||||||||||||||||! |||||||||!:!||||||||||||||||||..!||| lHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGly 213492 : TCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGT : 213548 247 : ArgValAspMetLysAspThrValAspGlyArgIleAlaSerIleValGluGlnHisV : 266 |||! !||||||!.. ! !.!||||||! !||||||||| !||||||.!.||||||| ArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleValAsnGlnHisV 213549 : AGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATG : 213608 267 : alArgIleLeu{Ar} >>>> Target Intron 1 >>>> {g}PheLeuGluLe : 274 |||||||||||{!:} 840 bp {!}||||||||||| alArgIleLeu{Ly}++ ++{s}PheLeuGluLe 213609 : TGCGGATACTG{AA}gt.........................ag{A}TTCTTAGAGCT : 214472 275 : uMetGluLysLeuLeuGlnGlnIleSerCysValGluCysLeuGlyCysMetMetAsn : 293 |:!!|||||| !|||!:!|||:!!|||! !!.!|||! |||! !|||! !:!!||| uValGluLysAlaLeuArgGlnValSerPheAlaGluLeuLeuValCysThrValAsn 214473 : CGTGGAGAAAGCACTTCGGCAAGTATCTTTCGCTGAATTATTAGTATGCACGGTGAAT : 214529 294 : LeuCysLeuLeuGlyTyrTyrCysIleMet >>>> Target Intron 2 >>>> : 304 |||||||||:!!||||||||| |||! ! 68 bp LeuCysLeuValGlyTyrTyrIleIleThr++ + 214530 : CTCTGTCTCGTTGGATATTACATAATAACGgt.........................a : 214628 305 : GluTrpAsnProLysGluLeuThrPheSerLeuThrTyrIleLeuLeuIleSerTyr : 322 ||||||||| !!!!..!.|||||| !!!!:!!||||||:!::!!||| !! !! ! +GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValValLeuTyrIleSer 214629 : ggAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGGTGTTGTATATCTCT : 214684 323 : PheGlyPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln >> : 341 ... |||||||||||||||||||||||||||||||||||||||:!!|||||| LeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValSerGluGln++ 214685 : CtcactttcaatattttcatattttgttaCATAGGCGAGCTTGTGTCTGAACAGgt.. : 214743 342 : >> Target Intron 3 >>>> CysLysLysValGlyGluValSerTyrMetIle : 351 123 bp ||||||||||||||||||||||||||||||||| ++CysLysLysValGlyGluValSerTyrMetIle 214744 : .......................agTGCAAAAAGGTCGGAGAAGTATCGTACATGATC : 214894 352 : GluTrpHisArgLeuSerGlyLysLysLysLeuCysCysIleLeuIleIleAlaMetS : 371 ||||||:!!|||||| !!|||!!.||||||||||||||||||||||||!!:||||||| GluTrpTyrArgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetS 214895 : GAATGGTACCGATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGT : 214954 372 : erAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPh : 390 |||||||||||:!!|||!!!|||||||||||||||||||||||||||||||||||||| erAsnSerSerValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPh 214955 : CCAATTCATCCGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTT : 215011 391 : eSerAsp >>>> Target Intron 4 >>>> IleValLysThrAlaValAlaP : 400 ||||..! 69 bp :!!|||::!|||:!!||||||| eSerSer++ ++ValValArgThrSerValAlaP 215012 : CAGCAGTgt.........................agGTTGTTCGAACATCGGTTGCCT : 215110 401 : heLeuAsnMetLeuArgAlaLeuThr : 408 |||||||| !||||||......::: heLeuAsnAlaLeuArgThrPheSer 215111 : TCTTAAACGCGTTACgaacattttca : 215136 vulgar: gi|383850686|ref|XP_003700914.1| 15 408 . KQ414889.1 212854 215136 + 1121 M 23 69 G 0 3 M 231 693 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 M 33 99 5 0 2 I 0 64 3 0 2 M 37 111 5 0 2 I 0 119 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212855 215136 1121 + . gene_id 2 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212855 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 212855 213621 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215019 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215019 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 215020 215021 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 215020 215088 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 215087 215088 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 215089 215136 . + . KQ414889.1 exonerate:protein2genome:local exon 215089 215136 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212855 215136 1121 + . alignment_id 2 ; Query gi|383850686|ref|XP_003700914.1| ; Align 212855 16 69 ; Align 212927 39 693 ; Align 214463 271 99 ; Align 214630 304 111 ; Align 214864 341 156 ; Align 215089 393 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 951 Query range: 12 -> 408 Target range: 208185 -> 212081 13 : ThrGlnAspTyrThrLysAsnValAsnLeuSerIleGlnPheSerArgTrpLeuLeuA : 32 !.!::!:!!|||! !!!.:!!:!!!:!!!!!:!:!!!::.!.!:! !||| !|||! AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 33 : rgProValGlyValTrpProLysSer<->GluValThrArgIleAspLysTyrPheTh : 50 :! !:!!||| !||||||!:!||| !!: !:!! !!:!!!!:!!. ! ysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHi 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCA : 208300 51 : rTrpLeuValAsnSerLeuCysSerThrLeuLeuSerPheLeuPheValProCysLeu : 69 ! |||:!!||| !||| !! ! !||||||.!!|||:!! ! :!!||| ! ! sIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGly 208301 : TATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGC : 208357 70 : ValPheLeuIleLeuAspValSerAspSerTyrAsnArgIleLysLeuIleGlyProL : 89 :!!||| !||||||! |||..!|||! !|||:!!!:!:!!|||:!! !.!! !!| MetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaL 208358 : ATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTC : 208417 90 : euSerPhePheLeuMetSerTyrMetLysTyrTyrLeuMetLeuLeuHisLysAsnAs : 108 |||||||||||:!!|||:!!!:!! !|||||| :!!||| !:!!!.!:!!..!|| euSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAs 208418 : TGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGA : 208474 109 : pIleLeuLysCysValGlnGlnValGlnArgAspTrpAlaAsnAlaArgHisLeuAsn : 127 ||||! !|||||||||:!! ! |||:!! !|||||| !|||!.!..!||| !.!. pIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGlu 208475 : CATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAG : 208531 128 : AspArgAsnIleMetGlyIleAsnAlaAsnTyrGlyArgLysLeuValValValSerA : 147 ||||||!!.|||||| ! !||||||!:!!:!!.!|||||||||:!!|||:!!!!!! AspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysG 208532 : GACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCG : 208591 148 : laPhePheMetSerSerSerTyrIlePhePheTyrIleAlaMetProIleSerValGl : 166 .! !||||||! !.!!.!. ||||||:::|||||||||:!!|||:!!!!! !! lyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAs 208592 : GAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGA : 208648 167 : yArgIleProAlaValAspGlyAsnPheThrPheIleValLeuProPheProSerSer : 185 !!:!:!! !! !! !! !||||||!!.|||!:!! ! !||| !!:!||| ! !! pLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValPro 208649 : CAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCT : 208705 186 : ThrArgIlePheAspTyrArgHisSerProPheAsnGluIlePhePheValValGlnC : 205 ! ! !|||.!.||| !|||:!!|||||| ! ||||||||||||!:!..!||||||! LysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnL 208706 : AAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAAT : 208765 206 : ysLeuAlaGlyThrIleLeuHisMetIleThrValGlyAlaCysSerLeuAlaAlaTh : 224 |||:!!||| !:!! !|||! ||||||||||||||||||.!!||||||||| euLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLe 208766 : TGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCT : 208822 225 : rPheAlaValHisAlaCysGlyGlnMetGluIleLeuMetAsnTrpLeuGluHisLeu : 243 !.!!|||:!!|||||||||||||||:!!:!!|||||||||::!|||:!!||| ! ||| uLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeu 208823 : GCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTG : 208879 244 : IleSerGlyArgValAspMetLysAspThrValAspGlyArgIleAlaSerIleValG : 263 :!!..!||||||! !||| !:!! ! !.!:!!||| !|||:!:|||!:!||||||| ValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleValG 208880 : GTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCGTGG : 208939 264 : luGlnHisValArgIleLeu{Ar} >>>> Target Intron 1 >>>> {g}Ph : 271 ||||||||||||||:!::!!{!.} 1536 bp {!}|| luGlnHisValArgValIle{As}++ ++{n}Ph 208940 : AGCAGCATGTTCGAGTGATC{AA}gt.........................ag{T}TT : 210499 272 : eLeuGluLeuMetGluLysLeuLeuGlnGlnIleSerCysValGluCysLeuGlyCys : 290 |:!!! |||! |||!!.||||||!!.:!!||||||! :!!||| :!!|||||| eIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGluMetValGlyCys 210500 : TATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAATGGTGGGGTGC : 210556 291 : MetMetAsnLeuCysLeuLeuGlyTyrTyrCysIleMet >>>> Target Intro : 304 ! :!!|||:!!|||!!!|||||||||||| !!:!!: 66 bp ThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210557 : ACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt................. : 210600 305 : n 2 >>>> GluTrpAsnProLysGluLeuThrPheSerLeuThrTyrIleLeuLeu : 319 ||||||:!! !!|||!!:! !! ! !|||||||||||||||:!!||| ++GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValLeu 210601 : ........agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTACTC : 210709 320 : IleSerTyrPheGlyPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaG : 339 :!!!!!! ! !! !|||||||||||||||||||||||||||||||||:!!:!!|||| LeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAlaG 210710 : CTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGCTG : 210769 340 : luGln >>>> Target Intron 3 >>>> CysLysLysValGlyGluValSer : 348 ||||| 999 bp !|||||||||||| !||| luGln++ ++ThrValLysValGlyGluLysSer 210770 : AACAggt.........................agACAGTAAAAGTTGGAGAAAAGTCT : 211795 349 : TyrMetIleGluTrpHisArgLeuSerGlyLysLysLysLeuCysCysIleLeuIleI : 368 |||||||||!!:|||:!!|||:!! !!||||||||| ||| ! !|||!!:| TyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValValProLeuMetI 211796 : TACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGATGA : 211855 369 : leAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIl : 387 ||:!!||||||:!!|||!!!! !|||:!!||||||||||||:!::!!! |||||||| leSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleValLeuSerIl 211856 : TCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTTCTTTCAAT : 211912 388 : eSerThrPheSerAsp >>>> Target Intron 4 >>>> IleValLysThrA : 397 ||||!:!|||.!!||| 104 bp :!!:!!||||||: eSerSerPheGlyAsp++ ++ValIleLysThrS 211913 : CAGTAGTTTCGGTGACgt.........................agGTTATCAAGACTT : 212046 398 : laValAlaPheLeuAsnMetLeuArgAlaLeuThr : 408 !!|||.!!!:!|||||||||||||||.!!!!!||| erValThrTyrLeuAsnMetLeuArgThrPheThr 212047 : CGGTAACATACTTGAACATGCTACGAACATTCACA : 212081 vulgar: gi|383850686|ref|XP_003700914.1| 12 408 . KQ414889.1 208185 212081 + 951 M 28 84 G 0 3 M 229 687 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 995 3 0 2 M 52 156 5 0 2 I 0 100 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 212081 951 + . gene_id 3 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208186 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208961 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211929 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 211930 211931 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 211930 212033 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 212032 212033 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 212034 212081 . + . KQ414889.1 exonerate:protein2genome:local exon 212034 212081 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208186 212081 951 + . alignment_id 3 ; Query gi|383850686|ref|XP_003700914.1| ; Align 208186 13 84 ; Align 208273 41 687 ; Align 210499 271 99 ; Align 210664 304 111 ; Align 211774 341 156 ; Align 212034 393 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 791 Query range: 14 -> 272 Target range: 221357 -> 222134 15 : AspTyrThrLysAsnValAsnLeuSerIleGlnPheSerArgTrpLeuLeuArgProV : 34 ||||||! !! !||||||!!.||||||:!:|||!!.|||||||||:!!|||!:!|||: AspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProI 221358 : GATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGA : 221415 35 : alGlyValTrpProLysSer<->GluValThrArgIleAspLysTyrPheThrTrpLe : 52 !!||||||||||||!!.||| .!.:!!:!!! !:!!!!:!:!|||.!! !||||| leGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLe 221416 : TCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 53 : uValAsnSerLeuCysSerThrLeuLeuSerPheLeuPheValProCysLeuValPhe : 71 |:!!||| !:!!|||! !!:!|||:!!!!!||||||!!.||||||||| !:!!!:! uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 72 : LeuIleLeuAspValSerAspSerTyrAsnArgIleLysLeuIleGlyProLeuSerP : 91 :!!||||||!!:|||..!||| !||||||||||||||||||:!:||||||||||||| ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 92 : hePheLeuMetSerTyrMetLysTyrTyrLeuMetLeuLeuHisLysAsnAspIleLe : 110 ||! !:!!|||:!!!:!:!:||||||:!!|||:!!:!!|||:!!:!!|||||||||! heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 111 : uLysCysValGlnGlnValGlnArgAspTrpAlaAsnAlaArgHisLeuAsnAspArg : 129 !:!!|||:!!:!!!:::!!:!! !!|||||| !||| !! !:!!! !!!.|||!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 130 : AsnIleMetGlyIleAsnAlaAsnTyrGlyArgLysLeuValValValSerAlaPheP : 149 :!!|||||| ! ||||||! !!:!||||||::!|||:!!:!!:!!!!!.!!|||| AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 150 : heMetSerSerSerTyrIlePhePheTyrIleAlaMetProIleSerValGlyArgIl : 168 |||||! !|||...::::::|||:::|||||||||!!:|||.!!|||||||||!:!|| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 169 : eProAlaValAspGlyAsnPheThrPheIleValLeuProPheProSerSerThrArg : 187 ||||||| !||| ||| ||||||||| !:!! !||||||! !|||! ! ! eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 188 : IlePheAspTyrArgHisSerProPheAsnGluIlePhePheValValGlnCysLeuA : 207 ||| !!||| !|||:!!|||||| ! |||||||||.!.||| !:!!||| !:!!| IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 208 : laGlyThrIleLeuHisMetIleThrValGlyAlaCysSerLeuAlaAlaThrPheAl : 226 |||||.!!:!::!!|||! |||||| !!.!||||||||||||!.!|||! !||||| laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 227 : aValHisAlaCysGlyGlnMetGluIleLeuMetAsnTrpLeuGluHisLeuIleSer : 245 ||||||||||||||||||||||:!!:!:||||||!:!||||||:!!|||||||||!:! aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 246 : GlyArgValAspMetLysAspThrValAspGlyArgIleAlaSerIleValGluGlnH : 265 ||||||!.!|||||| :!!!.!|||||| !!|||||||||!.!||||||.!.|||| GlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnH 222052 : GGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAAC : 222111 266 : isValArgIleLeuArgPheLeu : 272 ||||||||||||||!:!!:!:!! isValArgIleLeuGlnTyrVal 222112 : ACGTTCGAATATTGCAGTATGTA : 222134 vulgar: gi|383850686|ref|XP_003700914.1| 14 272 . KQ414889.1 221357 222134 + 791 M 26 78 G 0 3 M 232 696 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221358 222134 791 + . gene_id 4 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221358 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221358 222134 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221358 222134 791 + . alignment_id 4 ; Query gi|383850686|ref|XP_003700914.1| ; Align 221358 15 78 ; Align 221439 41 696 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 745 Query range: 13 -> 270 Target range: 226906 -> 227680 14 : GlnAspTyrThrLysAsnValAsnLeuSerIleGlnPheSerArgTrpLeuLeuArgP : 33 .!.|||||| !:!! !!:!!|||||||||||||||!!.!:!||||||||||||!:!| AsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysP 226907 : AACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAAC : 226964 34 : roValGlyValTrpProLysSer<->GluValThrArgIleAspLysTyrPheThrTr : 51 ||:!!|||:!!||||||..!||| :!! !:!!||||||! !:!! !|||:!!|| roLeuGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTr 226965 : CACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTG : 227021 52 : pLeuValAsnSerLeuCysSerThrLeuLeuSerPheLeuPheValProCysLeuVal : 70 ||||:!!..!! !||||||! !.!!|||:!!|||||| !!!.||| !! !! !:!! pLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeu 227022 : GTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTG : 227078 71 : PheLeuIleLeuAspValSerAspSerTyrAsnArgIleLysLeuIleGlyProLeuS : 90 !:!:!!:!!|||!!:|||!.!! !:!!||||||! !:!:|||:!!|||||||||:!!| TyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetS 227079 : TACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGT : 227138 91 : erPhePheLeuMetSerTyrMetLysTyrTyrLeuMetLeuLeuHisLysAsnAspIl : 109 |||||||| !|||||| !:!:||||||! !:!!:!! !!!!|||:!!:!!||||| erPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIl 227139 : CCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACAT : 227195 110 : eLeuLysCysValGlnGlnValGlnArgAspTrpAlaAsnAlaArgHisLeuAsnAsp : 128 ||||:!!||||||:!!!:!:!!:!! !!|||||| !||| !|||:!!|||.!.||| eLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAsp 227196 : TCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGAC : 227252 129 : ArgAsnIleMetGlyIleAsnAlaAsnTyrGlyArgLysLeuValValValSerAlaP : 148 ||||||:!:|||! !! !!||| !!|||||||||||||||:!!..!:!!!!!.!!| ArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrP 227253 : AGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGT : 227312 149 : hePheMetSerSerSerTyrIlePhePheTyrIleAlaMetProIleSerValGlyAr : 167 |||||:!:! !||||||::::::||||||||||||!.!:!:||||||!:!!.!|||!! hePheValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySe 227313 : TTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAG : 227369 168 : gIleProAlaValAspGlyAsnPheThrPheIleValLeuProPheProSerSerThr : 186 !:!! !!.!!! !||||||||| !!:!!:!||| !:!!|||||||||! ! !!! ! rValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLys 227370 : TGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAA : 227426 187 : ArgIlePheAspTyrArgHisSerProPheAsnGluIlePhePheValValGlnCysL : 206 ! !||| !||| !|||:!!|||||||||||||||||||||||| !||||||! !: IleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheV 227427 : ATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTG : 227486 207 : euAlaGlyThrIleLeuHisMetIleThrValGlyAlaCysSerLeuAlaAlaThrPh : 225 !!.!!|||! !:!:|||||| :!!||| !!.!|||||||||:!!|||||| !.! alThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLe 227487 : TAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCT : 227543 226 : eAlaValHisAlaCysGlyGlnMetGluIleLeuMetAsnTrpLeuGluHisLeuIle : 244 !|||||||||||||||||||||||||||:!:|||:!!::!||||||! !||||||||| uAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIle 227544 : TGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATC : 227600 245 : SerGlyArgValAspMetLysAspThrValAspGlyArgIleAlaSerIleValGluG : 264 ..!||||||!.!||||||!.. ! |||:!!|||! !|||||||||||||||||| ! AspGlyArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValThrH 227601 : GACGGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTC : 227660 265 : lnHisValArgIleLeuArg : 270 !.|||||||||||||||!:! isHisValArgIleLeuLys 227661 : ACCACGTTCGAATATTGAAG : 227680 vulgar: gi|383850686|ref|XP_003700914.1| 13 270 . KQ414889.1 226906 227680 + 745 M 27 81 G 0 3 M 230 690 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226907 227680 745 + . gene_id 5 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226907 227680 . + . KQ414889.1 exonerate:protein2genome:local exon 226907 227680 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226907 227680 745 + . alignment_id 5 ; Query gi|383850686|ref|XP_003700914.1| ; Align 226907 14 81 ; Align 226991 41 690 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 619 Query range: 2 -> 393 Target range: 256595 -> 258624 3 : LysThrValThrGlnThrThrAlaLeuAspThrGlnAspTyrThrLysAsnValAsnL : 22 !..|||:!!|||.!. ! !|||:!!! ! ! !:!!!:!! !!.. !! !:!!! SerThrMetThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspT 256596 : AGCACGATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATT : 256653 23 : euSerIleGlnPheSerArgTrpLeuLeuArgProValGlyValTrp<->ProLysSe : 40 !|||:!!|||!!.!:!||||||!!!|||!:!|||:!!|||!.!||| |||..!|| yrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSe 256654 : ACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTC : 256710 41 : rGluValThrArgIleAspLysTyrPheThrTrpLeuValAsnSerLeuCysSerThr : 59 |.....!|||! !:!!!!:::! !! !!:!! :!!:!!|||! !:!!|||! ! ! rSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGly 256711 : GTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGT : 256767 60 : LeuLeuSerPheLeuPheValProCysLeuValPheLeuIleLeuAspValSerAspS : 79 ! !:!!! !||| !!!.:!!|||||||||:!! !:!!.!!||||||! !..!..!! SerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerP 256768 : TCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTT : 256827 80 : erTyrAsnArgIleLysLeuIleGlyProLeuSerPhePheLeuMetSerTyrMetLy : 98 !||| ::::::||| ...||||||:!!||| !!:::!!!!:|||! ! !! heTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAs 256828 : TCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAA : 256884 99 : sTyrTyrLeuMetLeuLeuHisLysAsnAspIleLeuLysCysValGlnGlnValGln : 117 .||| |||:!!||||||!!. !!!.||||||! ! ! ||||||:!!!!.:!!:!! nTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGlu 256885 : TTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAA : 256941 118 : ArgAspTrpAlaAsnAlaArgHisLeuAsnAspArgAsnIleMetGlyIleAsnAlaA : 137 ! !|||||| !! !.!|||... !!!.|||!:!.!.:!:||| !! ||||||! ThrAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaA 256942 : ACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGA : 257001 138 : snTyrGlyArgLysLeuValValValSerAlaPhePheMetSerSerSerTyrIlePh : 156 ..!:!|||||| ! :!!!.!..! !!!!!||| !.!!|||..!|||.!! ... rgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCy 257002 : GATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctg : 257058 157 : ePheTyrIleAlaMetProIleSerValGlyArgIleProAlaValAspGlyAsnPhe : 175 |||:::::::!! ! !!:!:!:!..!! !! !|||! !!.!! !:!!! !!.. sPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThr 257059 : tttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACG : 257115 176 : ThrPheIleValLeuProPheProSerSerThrArgIlePheAspTyrArgHisSerP : 195 ! ! ! !||||||||| !! !! !! !! !!:!:!:!!.:!! ! !!!.|||| IleValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerP 257116 : ATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTC : 257175 196 : roPheAsnGluIlePhePheValValGlnCysLeuAlaGlyThrIleLeuHisMetIl : 214 || ||||||||| ! !! !!:!!||| !! !:!!..!! !||| ! !! ! roThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSe 257176 : CTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAG : 257232 215 : eThrValGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGlyGlnMet : 233 !||||||.!! !! !||||||||||||..!||||||..!||||||! !||||||:!! rThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeu 257233 : TACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTG : 257289 234 : GluIleLeuMetAsnTrpLeuGluHisLeuIleSerGlyArgValAspMetLysAspT : 253 :!:||||||:::|||:!! !.!.!!!:!:!:!! ! ! !:!! ::: | ThrValLeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysT 257290 : ACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaa : 257349 254 : hrValAsp<->GlyArgIleAlaSerIleValGluGlnHisValArgIleLeu{Ar} : 270 || !!:!|||!.! !|||||||||!!.|||:!!|||:!:|||{!!} hrPheProPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Se}+ 257350 : cgtttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}g : 257405 271 : >>>> Target Intron 1 >>>> {g}PheLeuGluLeuMetGluLysLeuLeu : 279 76 bp {!}|||:!!..!! !!!:|||:!!:!!:!! + ++{r}PheIleSerTyrIleGluGluValMet 257406 : t.........................ag{T}TTCATATCATATATCGAGGAAGTGATG : 257506 280 : GlnGlnIleSerCysValGluCysLeuGlyCysMetMetAsnLeuCysLeuLeuGlyT : 299 .!.!:!|||!!!! !:!!|||! !!! !!|||! !:!! !:!!|||:!!||||||| AsnArgIleCysPheLeuGluLeuPheArgCysThrLeuAlaIleCysMetLeuGlyT 257507 : AACCGAATATGTTTTTTAGAGTTGTTTAGATGCACGCTGGCTATATGCATGCTGGGAT : 257566 300 : yrTyrCysIleMet >>>> Target Intron 2 >>>> GluTrpAsnProLys : 308 ||||| !:!! ! 684 bp ||||||::! !!::: yrTyrIleLeuAla++ ++GluTrpSerThrGln 257567 : ACTACATTCTTGCGgt.........................aggaATGGTCTACGCaa : 258277 309 : GluLeuThrPheSerLeuThrTyrIleLeuLeuIleSerTyrPheGlyPheAsnIleP : 328 :::::: :::|||.!!:!!:!!:!!! !! ......|||||||||| AspIleGlnAsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIleP 258278 : gatattcaaaatttgagttcgtaCTTTATGATACTCATATcactttctttcaatattt : 258337 329 : heIlePheCysTyrIleGlyGluLeuValAlaGluGln >>>> Target Intron : 341 ||:::...|||||||||||||||:!!:!!.!!|||||| 90 bp heValIleCysTyrIleGlyGluIleLeuThrGluGln++ 258338 : ttgtaatatgttACATAGGTGAAATATTAACAGAACAGgt.................. : 258378 342 : 3 >>>> CysLysLysValGlyGluValSerTyrMetIleGluTrpHisArgLeuS : 357 |||||||||||||||!!:||| !||||||! !!!:|||:!! !||| ++CysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuP 258379 : .......agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTAC : 258514 358 : erGlyLysLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnSerSerIleLy : 376 !!! !|||!:!! !||| !! ||||||:!!|||||| |||!:! ! !:!!:! roAspLysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGl 258515 : CTGACAAAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCA : 258571 377 : sLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerAspIle : 393 !:!!|||||||||...... ...::!||||||! !||||||||||||:!: nIleThrAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAspVal 258572 : AATCACCGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATGTG : 258624 vulgar: gi|383850686|ref|XP_003700914.1| 2 393 . KQ414889.1 256595 258624 + 619 M 35 105 G 0 3 M 218 654 G 0 3 M 14 42 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256596 258624 619 + . gene_id 6 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256596 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256596 257404 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256596 258624 619 + . alignment_id 6 ; Query gi|383850686|ref|XP_003700914.1| ; Align 256596 3 105 ; Align 256704 38 654 ; Align 257361 256 42 ; Align 257482 271 99 ; Align 258265 304 111 ; Align 258466 341 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 534 Query range: 3 -> 340 Target range: 259718 -> 261844 4 : ThrValThrGlnThrThrAlaLeuAspThrGlnAspTyrThrLysAsnValAsnLeuS : 23 |||:!!|||.!.! !:!!!.!!!!! ! !..!!:!|||!..:!! !:!!! !| ThrMetThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrS 259719 : ACGATGACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATA : 259776 24 : erIleGlnPheSerArgTrpLeuLeuArgProValGlyValTrp<->ProLysSerGl : 41 ||:!!||||||!:!||||||!!!|||!:!|||:!!|||!.!||| |||..!|||.. erLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSe 259777 : GCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTC : 259833 42 : uValThrArgIleAspLysTyrPheThrTrpLeuValAsnSerLeuCysSerThrLeu : 60 ...!||||||:!!!!:||| !.!!:!! :!!:!!! !! !:!!|||! !!:! ! rThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThr 259834 : CACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACC : 259890 61 : LeuSerPheLeuPheValProCysLeuValPheLeuIleLeuAspValSerAspSerT : 80 :!! ! !! !.!.:!!||||||:!!:!! !:!!:!!|||!!: !..!..!! !| IleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuT 259891 : ATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGT : 259950 81 : yrAsnArgIleLysLeuIleGlyProLeuSerPhePheLeuMetSerTyrMetLysTy : 99 ||! !:!! |||:!!:!!|||||||||!!! !!::!!!:!:.!!! !!!:!!.|| yrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTy 259951 : ACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTA : 260007 100 : rTyrLeuMetLeuLeuHisLysAsnAspIleLeuLysCysValGlnGlnValGlnArg : 118 | !:!!||||||... !..|||||||||!..||||||:!!!!.|||:!!!.! rThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsn 260008 : CACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAAC : 260064 119 : AspTrpAlaAsnAlaArgHisLeuAsnAspArgAsnIleMetGlyIleAsnAlaAsnT : 138 |||||| !! ! !! !... !!!.|||!:!|||:!:||| !! ! !!|||!!.! AspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysP 260065 : GATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAAT : 260124 139 : yrGlyArgLysLeuValValValSerAlaPhePheMetSerSerSerTyrIlePhePh : 157 :!|||||| ! :!!!.!!.! !!!!||| !|||:!!..!.!!.!! !:!:! !|| heGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPh 260125 : TCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTT : 260181 158 : eTyrIleAlaMetProIleSerValGlyArgIleProAlaValAspGlyAsnPheThr : 176 |! !:!:!.!! ! !:!:|||..!! ! !|||! !!.!! !:!!! !!.. ! ! eCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIle 260182 : CTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATC : 260238 177 : PheIleValLeuProPheProSerSerThrArgIlePheAspTyrArgHisSerProP : 196 !! !:!!||||||! ! !! !! !! !..!:!:.!.:!! !.! !!||||||. ValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProM 260239 : GTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTA : 260298 197 : heAsnGluIlePhePheValValGlnCysLeuAlaGlyThrIleLeuHisMetIleTh : 215 !.||||||||| !!.!!|||||||||! !:!!:!!||| !|||:!!:!! !! !|| etAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerTh 260299 : TGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCAC : 260355 216 : rValGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGlyGlnMetGlu : 234 ||||||| !! !||||||||||||..!.!..!!!.!|||||||||||||||:!!.!. rValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsn 260356 : CGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAAC : 260412 235 : IleLeuMetAsnTrpLeu<->GluHisLeuIleSerGlyArgValAspMetLysAspT : 253 :!:||||||.!.|||:!! ||| !:!! !..!..!||| ! ! !||| ! . ValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysA 260413 : GTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGG : 260472 254 : hrValAspGlyArgIleAlaSerIleValGluGlnHisValArgIleLeu{Ar} >> : 270 !! ! ! !..!|||!.! !|||||||||!!.|||:!!||| !|||{! } laProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeu{Th}++ 260473 : CTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC{AC}gt.. : 260527 271 : >> Target Intron 1 >>>> {g}PheLeuGluLeuMetGluLysLeuLeuGln : 280 257 bp {!}|||:!!..!! !!!:||| ! :!!:!!.!. ++{r}PheIleSerArgIleGluAspValMetAsn 260528 : .......................ag{C}TTCATATCGCGTATCGAGGATGTGATGAAC : 260810 281 : GlnIleSerCysValGluCysLeuGlyCysMetMetAsnLeuCysLeuLeuGlyTyrT : 300 !:!|||!!!! !:!!|||! !!! !!|||! :!!:!!:!!|||||||||||||||| ArgIleCysPheLeuGluLeuPheArgCysThrLeuAspIleCysLeuLeuGlyTyrT 260811 : CGGATATGCTTCCTGGAGTTGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACT : 260870 301 : yrCysIleMet >>>> Target Intron 2 >>>> GluTrpAsnProLysGlu : 309 || !:!!||| 852 bp |||||| ! !:!!!!: yrIleLeuMet++ ++GluTrpAlaGluGlnAsp 260871 : ATATTCTTATGgt.........................agGAATGGGCTGAGCAAGAT : 261749 310 : LeuThrPheSerLeuThrTyrIleLeuLeuIleSerTyrPheGlyPheAsnIlePheI : 329 :!! ! ! !! !||||||.!!:!!:!!:!:! ! .!! !!||||||:!!|||| IleGlnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheI 261750 : ATACAAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTA : 261809 330 : lePheCysTyrIleGlyGluLeuValAlaGluGln : 340 ||.!!|||||||||||||||:!!:!!.!!|||||| leIleCysTyrIleGlyGluIleLeuThrGluGln 261810 : TAATCTGTTACATCGGTGAAATACTAACGGAACAG : 261844 vulgar: gi|383850686|ref|XP_003700914.1| 3 340 . KQ414889.1 259718 261844 + 534 M 34 102 G 0 3 M 203 609 G 0 3 M 29 87 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259719 261844 534 + . gene_id 7 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259719 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259719 260524 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259719 261844 534 + . alignment_id 7 ; Query gi|383850686|ref|XP_003700914.1| ; Align 259719 4 102 ; Align 259824 38 609 ; Align 260436 241 87 ; Align 260783 271 99 ; Align 261734 304 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 472 Query range: 2 -> 274 Target range: 232402 -> 233221 3 : LysThrValThrGlnThrThrAlaLeuAspThrGlnAspTyrThrLysAsnValAsnL : 22 :!!..!:!!! !! ! !:!!:!!! !|||||| !:!! !|||::!:!! !.!.! GluValIleMetLeuAspSerSerArgAspThrLeuAsnAlaThrArgAspTyrGluT 232403 : GAGGTAATCATGCTGGACTCGTCCCGCGACACGTTGAACGCTACGCGAGACTACGAGT : 232460 23 : euSerIleGlnPheSerArgTrpLeuLeuArgProValGlyValTrpProLys<->Se : 40 !||||||||| ! !:!||||||!!!|||! !|||:!!|||!.!||||||::: !! yrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgValTh 232461 : ACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTGTTAC : 232517 41 : rGluValThrArgIleAspLysTyrPheThrTrpLeuValAsnSerLeuCysSerThr : 59 !|||..!:!!||| !.!.:!! .!!.!! |||:!!!.. ! !||| !:!! rGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHisSer 232518 : AGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCATTCT : 232574 60 : LeuLeuSerPheLeuPheValProCysLeuValPheLeuIleLeuAspValSerAspS : 79 |||:!!! !! !! !.!!|||||||||:!!:!!|||:!!:!:!!!!!:! !!!!..! LeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThrSerL 232575 : CTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACGAGCC : 232634 80 : erTyrAsnArgIleLysLeuIleGlyProLeuSerPhePheLeuMetSerTyrMetLy : 98 ! ! .!.|||!!:|||! !|||||||||:!!||| !|||||||||.!! ! :!!!! euGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluLeuAs 232635 : TAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAATTGAA : 232691 99 : sTyrTyrLeuMetLeuLeuHisLysAsnAspIleLeuLysCysValGlnGlnValGln : 117 .|||! !! !:!!||| ! ! !|||||||||||| ! ||||||:!!||||||:!! nTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnValLys 232692 : TTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGTGAAA : 232748 118 : ArgAspTrpAlaAsnAlaArgHisLeuAsnAspArgAsnIleMetGlyIleAsnAlaA : 137 !:!|||||| !|||!.!!:! ! ! ! ! !!|||:!!:!:||| !! ||||||! GlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsnAlaL 232749 : CAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAACGCGA : 232808 138 : snTyrGlyArgLysLeuValValValSerAlaPhePheMetSerSerSerTyrIlePh : 156 !. !||||||..!:!!!.! !:!!:!!||||||! !||| !!!!.!! ! !! ysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValGlySe 232809 : AACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCGGCTC : 232865 157 : ePheTyrIleAlaMetProIleSerValGlyArgIleProAlaValAspGlyAsnPhe : 175 ! ! ! |||!.!! !:!! !!:!!.!!! !.!! !!.!! !:!!! !!:!!:! rAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSerTyr 232866 : CGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAGTTAC : 232922 176 : ThrPheIleValLeuProPheProSerSerThrArgIlePheAspTyrArgHisSerP : 195 :!!.!. ! !||||||! ! !!! !! !|||!:!:!:.!.||| !||| !|||| SerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPheSerP 232923 : TCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTCAGTC : 232982 196 : roPheAsnGluIlePhePheValValGlnCysLeuAlaGlyThrIleLeuHisMetIl : 214 || |||||||||.!.||||||:!!|||||||||:!!||| !|||:!!:!! :! roThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnSerVa 232983 : CGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACTCCGT : 233039 215 : eThrValGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGlyGlnMet : 233 !|||||||||||||||.!!|||!.!|||..!.!.|||:!!|||||||||||||||:!! lThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGlnLeu 233040 : TACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACAGCTG : 233096 234 : GluIleLeuMetAsnTrpLeuGluHisLeuIleSerGlyArgValAspMetLysAspT : 253 .!.:!::!!|||::: |||!!: !!|||:!:..!!.!!:!! !.!. !:!! . AsnValValMetSerLysLeuAspAspLeuValAspAlaLysGlyGlnGluGluArgV 233097 : AACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAGGAGGAGAGAG : 233156 254 : hrValAspGlyArgIleAlaSerIleValGluGlnHisValArgIleLeuArgPheLe : 272 .!!.!.!. !!!:!:!!!.!! !|||||||||!!.|||:!!|||! !||||||!:!|| alAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeuArgTyrLe 233157 : TCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTAAGGTATTT : 233213 273 : uGluLeu : 274 |...:!! uSerVal 233214 : GTCTGTG : 233221 vulgar: gi|383850686|ref|XP_003700914.1| 2 274 . KQ414889.1 232402 233221 + 472 M 37 111 G 0 3 M 235 705 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232403 233221 472 + . gene_id 8 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232403 233221 . + . KQ414889.1 exonerate:protein2genome:local exon 232403 233221 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232403 233221 472 + . alignment_id 8 ; Query gi|383850686|ref|XP_003700914.1| ; Align 232403 3 111 ; Align 232517 40 705 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 449 Query range: 7 -> 343 Target range: 262807 -> 264657 8 : ThrThrAlaLeuAspThrGlnAspTyrThrLysAsnValAsnLeuSerIleGlnPheS : 27 |||! !.!! !||| !:!!..!!:! !!.. ! !:!!! !|||:!:|||.!.! ThrMetThrAspAspLeuGluSerPheGlySerLeuSerAspTyrSerLeuGlnIleA 262808 : ACGATGACCGACGACCTGGAAAGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAA : 262865 28 : erArgTrpLeuLeuArgProValGlyValTrpProLysSer<->GluValThrArgIl : 45 :!||||||||||||!:!|||:!!|||!.!|||||| !||| ..!:!!:!!|||!! snArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerAlaSerIleSerArgMe 262866 : ACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAAT : 262922 46 : eAspLysTyrPheThrTrpLeuValAsnSerLeuCysSerThrLeuLeuSerPheLeu : 64 :!!:::! !.!! !!::|||:!!! ! !:!!|||! ! !|||:!! !! ! ! tGluArgIleIleTrpPheLeuLeuIleValValCysTyrCysLeuIleLeuSerThr 262923 : GGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACC : 262979 65 : PheValProCysLeuValPheLeuIleLeuAspValSerAspSerTyrAsnArgIleL : 84 !!:!!|||! !:!!:!! !:!!:!!|||!!:!.!..!:!!! !:!!! !:!:!:: ValIleProSerIleLeuHisIleValLeuGluAlaGluAsnPheHisMetLysLeuG 262980 : GTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGC : 263039 85 : ysLeuIleGlyProLeuSerPhePheLeuMetSerTyrMetLysTyrTyrLeuMetLe : 103 !!:!!:!!|||||||||.!! !::!!!:!:.!! !!:!!.||| !! !:!!|| lnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLe 263040 : AGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTT : 263096 104 : uLeuHisLysAsnAspIleLeuLysCysValGlnGlnValGlnArgAspTrpAlaAsn : 122 |||||||!..!!.||||||! ! |||||||||!!.||||||..!||||||..!! ! uLeuHisSerLysAspIleGlnGlyCysValGlnHisValGlnGluAspTrpCysIle 263097 : GCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATC : 263153 123 : AlaArgHisLeuAsnAspArgAsnIleMetGlyIleAsnAlaAsnTyrGlyArgLysL : 142 !.!! !...|||.!.|||!:!..!|||||| !! ||||||!!.||||||||| ! : ValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrV 263154 : GTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACG : 263213 143 : euValValValSerAlaPhePheMetSerSerSerTyrIlePhePheTyrIleAlaMe : 161 !!!.!!.! !!!!|||.!!||||||..!!!!||| !!!:! ! ! !:!!!.!! alAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetCysLysCysLeuValTh 263214 : TGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCAC : 263270 162 : tProIleSerValGlyArgIleProAlaValAspGlyAsnPheThrPheIleValLeu : 180 !!.!!!!!..! ! !||| !! !! !:!!! !!.! ! !.!. !:!!||| rAlaPheThrThrGlnValIleGluAspGlyAsnGluThrArgIleLeuArgMetLeu 263271 : AGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTA : 263327 181 : ProPheProSerSerThrArgIlePheAspTyrArgHisSerProPheAsnGluIleP : 200 |||! !||| !! !! !..!|||.!! ! ! !:!||| |||||||||| ProCysProValTyrLysGluIleIleProValAspThrAsnProThrAsnGluIleP 263328 : CCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCT : 263387 201 : hePheValValGlnCysLeuAlaGlyThrIleLeuHisMetIleThrValGlyAlaCy : 219 ||.!!!.!..!|||! !|||:!!||| !|||:!! ! !! !||||||||||||! heLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaThrThrValGlyAlaPh 263388 : TTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTT : 263444 220 : sSerLeuAlaAlaThrPheAlaValHisAlaCysGlyGlnMetGluIleLeuMetAsn : 238 !.!!:!!.!!|||..!||||||! !|||||||||||||||:!!.!.:!:||||||::! eGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSer 263445 : CGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCC : 263501 239 : TrpLeuGluHisLeuIleSer<->GlyArgValAspMetLysAspThrValAspGlyA : 257 |||:!! !.!.!!!:!:!:! ..!|||! !!!:! |||:!! ! ! ! !. TrpIleThrGluPheValAsnGlnSerArgAspGluAsnLysAsnLeuTyrPheThrG 263502 : TGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCG : 263561 258 : rgIleAlaSerIleValGluGlnHisValArgIleLeu{Ar} >>>> Target In : 270 .!|||!.! !|||||||||!!.|||:!!|||:!!|||{!!} 72 b luIleGlyValIleValGluHisHisLeuArgValLeu{Se}++ 263562 : AGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTG{AG}gt.............. : 263604 271 : tron 1 >>>> {g}PheLeuGluLeuMetGluLysLeuLeuGlnGlnIleSerCys : 284 p {!}|||:!!!!:! !!!::!!!!.:!!:!!... !|||!!!! ! ++{r}PheIleAspArgIleLysAsnValMetSerThrIleCysPhe 263605 : ...........ag{T}TTCATAGATCGTATTAAGAATGTGATGAGTACGATATGTTTC : 263714 285 : ValGluCysLeuGlyCysMetMetAsnLeuCysLeuLeu{G} >>>> Target In : 298 ||||||! !!! !..!! !:!!:!!:!!|||:!!|||{!} 764 ValGluLeuPheLysAlaThrLeuAspIleCysMetLeu{A}++ 263715 : GTGGAGTTATTCAAGGCTACGCTGGATATATGCATGCTA{G}gt.............. : 263759 299 : tron 2 >>>> {ly}TyrTyrCysIleMetGluTrpAsnProLysGluLeuThrPh : 312 bp {.!} ! !! !.!!..!||||||.!. ! ! :::::: +-{la}IleAspValPheGlnGluTrpGluSerHisAspIleGlnAs 263760 : ...........aa{CA}ATTGACGTTTTTCAGGAATGGGAAAGTCAtgatattcaaaa : 264562 313 : eSerLeuThrTyrIleLeuLeuIleSerTyrPheGlyPheAsnIlePheIlePheCys : 331 !||||||.!!:!!:!!:!:! !! .!. !! !|||||||||:!!.!.||| nLeuThrThrTyrPheMetIleLeuIleSerMetCysGlyAsnIlePheLeuMetCys 264563 : tttgacTACATATTTCATGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGT : 264619 332 : TyrIleGlyGluLeuValAlaGluGlnCysLysLys : 343 ||||||||||||:!!:!!.!!|||||| ||| TyrIleGlyGluIleLeuThrGluGlnValIleLys 264620 : TATATCGGCGAGATATTGACTGAGcaggtaattaaa : 264657 vulgar: gi|383850686|ref|XP_003700914.1| 7 343 . KQ414889.1 262807 264657 + 449 M 33 99 G 0 3 M 205 615 G 0 3 M 24 72 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 27 81 S 0 1 5 0 2 I 0 760 3 0 2 S 1 2 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262808 264657 449 + . gene_id 9 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262808 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262808 263601 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 263673 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263672 263673 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 263674 263756 . + . KQ414889.1 exonerate:protein2genome:local exon 263674 263756 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263757 263758 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263757 264520 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264519 264520 . + . intron_id 1 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 264521 264657 . + . KQ414889.1 exonerate:protein2genome:local exon 264521 264657 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262808 264657 449 + . alignment_id 9 ; Query gi|383850686|ref|XP_003700914.1| ; Align 262808 8 99 ; Align 262910 41 615 ; Align 263528 246 72 ; Align 263675 271 81 ; Align 264523 299 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 402 Query range: 303 -> 408 Target range: 228247 -> 230518 304 : GluTrpAsnProLysGluLeuThrPheSerLeuThrTyrIleLeuLeuIleSerTyrP : 323 |||||||||||||||||||||||||||:!!:!!|||||| ! !|||:!!! !! !| GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerP 228248 : GAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCT : 228305 324 : heGlyPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln >>> : 341 || |||||||||||||||||||||||||||||||||:!!|||||||||!!. heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluHis++ 228306 : TTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACgt... : 228361 342 : > Target Intron 1 >>>> CysLysLysValGlyGluValSerTyrMetIleG : 352 1889 bp |||!:!|||||||||||| !||||||||||||| ++CysArgLysValGlyGluLysSerTyrMetIleG 228362 : ......................agTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCG : 230281 353 : luTrpHisArgLeuSerGlyLysLysLysLeuCysCysIleLeuIleIleAlaMetSe : 371 |||||:!!||||||!!!|||!!.||||||||||||||||||||||||||||||||||| luTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 230282 : AATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTC : 230338 372 : rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPhe : 390 ||||!!!|||! |||!!!|||||||||||||||||||||||||||:!!!:!|||||| rAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnThrPhe 230339 : CAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACACTTTC : 230395 391 : SerAsp >>>> Target Intron 2 >>>> IleValLysThrAlaValAlaPh : 400 |||||| 67 bp :!!|||||||||:!!:!!!.!|| SerAsp++ ++ValValLysThrSerMetGlyPh 230396 : AGCGACgt.........................agGTCGTTAAAACGTCCATGGGTTT : 230492 401 : eLeuAsnMetLeuArgAlaLeuThr : 408 ||||||||||||||||.!!|||||| eLeuAsnMetLeuArgThrLeuThr 230493 : CTTAAACATGCTACGAACACTGACG : 230518 vulgar: gi|383850686|ref|XP_003700914.1| 303 408 . KQ414889.1 228247 230518 + 402 M 37 111 5 0 2 I 0 1885 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228248 230518 402 + . gene_id 10 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230403 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230403 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 230404 230405 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 230404 230470 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 230469 230470 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230471 230518 . + . KQ414889.1 exonerate:protein2genome:local exon 230471 230518 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228248 230518 402 + . alignment_id 10 ; Query gi|383850686|ref|XP_003700914.1| ; Align 228248 304 111 ; Align 230248 341 156 ; Align 230471 393 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 387 Query range: 12 -> 302 Target range: 274356 -> 275306 13 : ThrGlnAspTyrThrLysAsnValAsnLeuSerIleGlnPheSerArgTrpLeuLeuA : 32 ||| !:!!!:! !!.. ! !:!!! !|||:!:|||!!.!:!||||||!!!|||! ThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuL 274357 : ACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGA : 274414 33 : rgProValGlyValTrpPro<->LysSerGluValThrArgIleAspLysTyrPheTh : 50 :!|||:!!|||!.!|||||| ||| ..!|||!:!.!!!!:::! !.!!:! ysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLeuSe 274415 : AGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTC : 274471 51 : rTrpLeuValAsnSerLeuCysSerThrLeuLeuSerPheLeuPheValProCysLeu : 69 ! |||::: |||||| ! !!!!:!! !! ! ! !!:!!||| !!:!! rHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIle 274472 : ACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATA : 274528 70 : ValPheLeuIleLeuAspValSerAspSerTyrAsnArgIleLysLeuIleGlyProL : 89 !! !:!!||||||! ! !..!..! !:!! !:!:!:||||||:!!||||||| PheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProL 274529 : TTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTC : 274588 90 : euSerPhePheLeuMetSerTyrMetLysTyrTyrLeuMetLeuLeuHisLysAsnAs : 108 ||.!! !!::!!!!!:.!! !!:!!.||| ! !:!!||||||!.!!..!!.!! euGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGl 274589 : TCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGA : 274645 109 : pIleLeuLysCysValGlnGlnValGlnArgAspTrpAlaAsnAlaArgHisLeuAsn : 127 :|||! ! ||||||:!!!!.:!!|||! !|||||| !! !!.!! !...! !.!. uIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGlu 274646 : GATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAG : 274702 128 : AspArgAsnIleMetGlyIleAsnAlaAsnTyrGlyArgLysLeuValValValSerA : 147 |||!:!.!.:!:||| !! ||||||!!. !|||||| ! :!!!.!:!! !!!!!| AspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysA 274703 : GATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTG : 274762 148 : laPhePheMetSerSerSerTyrIlePhePheTyrIleAlaMetProIleSerValGl : 166 || ||||||..!!!!.!! !:!!! !!:!! !:!: !! !!.!!!!!:!! laAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGl 274763 : CGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCA : 274819 167 : yArgIleProAlaValAspGlyAsnPheThrPheIleValLeuProPheProSerSer : 185 !! !:!!! !!.!! !:!!! !!.! ||| ! !:!!||||||! ! !:!!! ! nThrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyr 274820 : GACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTAC : 274876 186 : ThrArgIlePheAspTyrArgHisSerProPheAsnGluIlePhePheValValGlnC : 205 ! !!:!||| !!! ! |||||| ||||||||| !!.!!!.! !|||! LysLysIleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnP 274877 : AAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAAT : 274936 206 : ysLeuAlaGlyThrIleLeuHisMetIleThrValGlyAlaCysSerLeuAlaAlaTh : 224 !:!!:!!||| !|||:!!:!! !! !.!!|||||||||! !||||||||||||.. heValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaVa 274937 : TCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGT : 274993 225 : rPheAlaValHisAlaCysGlyGlnMetGluIleLeuMetAsnTrpLeuGluHisLeu : 243 !||||||!.!||||||! !||||||:!!...:!:||||||! |||:!! .!.!!! lPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGluPhe 274994 : GTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTT : 275050 244 : IleSer<->GlyArgValAspMetLysAspThrValAspGlyArgIleAlaSerIleV : 262 :!:!:! ..!|||! ... |||:::... ..!..!|||!.! !:!!| ValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValValV 275051 : GTGAATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGGTTG : 275110 263 : alGluGlnHisValArgIleLeu{Ar} >>>> Target Intron 1 >>>> {g : 270 |||||!!.|||:!!|||:!!|||{!!} 74 bp {! alGluHisHisLeuArgValLeu{Se}++ ++{r 275111 : TCGAACATCATCTGAGGGTACTC{AG}gt.........................ag{T : 275210 271 : }PheLeuGluLeuMetGluLysLeuLeuGlnGlnIleSerCysValGluCysLeuGly : 289 }|||:!!! !! !!!:||| ! :!!:!!.!.!:!|||!!!! !:!!|||! !!! ! }PheIleAlaArgIleGluAspValMetAsnArgIleCysPheMetGluLeuPheLys 275211 : }TTCATAGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAATTGTTCAAG : 275265 290 : CysMetMetAsnLeuCysLeuLeuGlyTyrTyrCysIle : 302 |||! :!!:!!:!!|||:!!|||||||||||| !:!! CysThrLeuAspMetCysMetLeuGlyTyrTyrIleLeu 275266 : TGTACTCTGGATATGTGCATGCTTGGCTATTACATTCTC : 275306 vulgar: gi|383850686|ref|XP_003700914.1| 12 302 . KQ414889.1 274356 275306 + 387 M 26 78 G 0 3 M 207 621 G 0 3 M 24 72 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274357 275306 387 + . gene_id 11 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274357 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274357 275135 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274357 275306 387 + . alignment_id 11 ; Query gi|383850686|ref|XP_003700914.1| ; Align 274357 13 78 ; Align 274438 39 621 ; Align 275062 246 72 ; Align 275211 271 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 387 Query range: 22 -> 269 Target range: 278579 -> 279338 23 : SerIleGlnPheSerArgTrpLeuLeuArgProValGlyValTrpProLysSerGlu< : 42 |||:!!|||.!.!:!||||||!!!|||!:!|||:!!|||||||||||| ||| SerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuC 278580 : AGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCT : 278637 43 : ->ValThrArgIleAspLysTyrPheThrTrpLeuValAsnSerLeuCysSerThrLe : 60 ||||||! !:!:!!:||| ! !:!! !:!!:!! ! !:!! !!!!! !|| ysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLe 278638 : GCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCT : 278694 61 : uLeuSerPheLeuPheValProCysLeuValPheLeuIleLeuAsp<->ValSerAsp : 78 |:!!.!!||||||!!.||||||||| !:!!! ! !:!:|||||| ..!.!!||| uIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAsp 278695 : GATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGAT : 278751 79 : SerTyrAsnArgIleLysLeuIleGlyProLeuSerPhePheLeuMetSerTyrMetL : 98 ! !!!..!:!||||||:!!||||||||||||||||||! ! !|||:!! !!:| LeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrIleL 278752 : CTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCA : 278811 99 : ysTyrTyrLeuMetLeuLeuHisLysAsnAspIleLeuLysCysValGlnGlnValGl : 117 ||||||||:!!:!::!!! !!.! ..! ! ||| !|||||||||.!..!.:!!!: ysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIleAr 278812 : AATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCG : 278868 118 : nArgAspTrpAla<-><-><->AsnAlaArgHisLeuAsnAspArgAsnIleMetGly : 133 :! !||||||:!! ::: !|||... ...:::|||...|||||| !! gThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMetArg 278869 : TACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTGAGG : 278925 134 : IleAsnAlaAsnTyrGlyArgLysLeuValValValSerAlaPhePheMetSerSerS : 153 !!:!|||!.. !||||||...|||!.!:!! !!|||||| !||||||! !|||. AspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerG 278926 : GACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCG : 278985 154 : erTyrIlePhePheTyrIleAlaMetProIleSerValGlyArgIleProAlaValAs : 172 !! :!!|||!:! ! !!.!||||||:!:! !!.!! !|||! ! !:!!|| lyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIleAs 278986 : GCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGA : 279042 173 : pGlyAsnPheThrPheIleValLeuProPheProSerSerThrArgIlePheAspTyr : 191 | ||| ||| ! ! ! !! ! !!||||||! !! ! ! !!:!!.!!||| p---AsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 279043 : C---AATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCG : 279096 192 : ArgHisSerProPheAsnGluIlePhePheValValGlnCysLeuAlaGlyThrIleL : 211 ||| !||||||! !|||||| ! !!:!!||||||||||||!.! !:!!| ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValL 279097 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTT : 279156 212 : euHisMetIleThrValGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCy : 230 ||:!! !:!!||||||||||||||||||||| !|||..!|||!.!:!!|||!.!|| euTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCy 279157 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTG : 279213 231 : sGlyGlnMetGluIleLeuMetAsnTrpLeuGluHisLeuIleSerGlyArgValAsp : 249 |||||||.!...!||||||:!!!.. !|||!!: ! ||||||..!||| ! !! sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLysGly 279214 : TGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGG : 279270 250 : MetLys<-><->AspThrValAspGlyArgIleAlaSerIleValGluGlnHisValA : 267 ! !||| ..!||| !!!: !|||:!:!.!..!|||:!!|||!!.|||:!!! ArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuL 279271 : AGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGA : 279330 268 : rgIleLeu : 269 :!|||||| ysIleLeu 279331 : AGATACTG : 279338 vulgar: gi|383850686|ref|XP_003700914.1| 22 269 . KQ414889.1 278579 279338 + 387 M 19 57 G 0 3 M 34 102 G 0 3 M 46 138 G 0 9 M 51 153 G 1 0 M 78 234 G 0 6 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278580 279338 387 + . gene_id 12 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278580 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278580 279338 . + . insertions 21 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278580 279338 387 + . alignment_id 12 ; Query gi|383850686|ref|XP_003700914.1| ; Align 278580 23 57 ; Align 278640 42 102 ; Align 278745 76 138 ; Align 278892 122 153 ; Align 279045 174 234 ; Align 279285 252 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 377 Query range: 22 -> 269 Target range: 284526 -> 286288 23 : SerIleGlnPheSerArgTrpLeuLeuArgProValGlyValTrpProLysSerGlu< : 42 |||:!!|||.!.!:!||||||!!!|||!:!|||:!!|||||||||||| ||| SerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuC 284527 : AGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCT : 284584 43 : ->ValThrArgIleAspLysTyrPheThrTrpLeuValAsnSerLeuCysSerThrLe : 60 ||||||! !:!:!!:||| ! !:!! !:!!:!! ! !:!! !!!!! !|| ysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLe 284585 : GCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCT : 284641 61 : uLeuSerPheLeuPheValProCysLeuValPheLeuIleLeuAsp<->ValSerAsp : 78 |:!!.!!||||||!!.||||||||| !:!!! ! !:!:|||||| ..!.!!||| uIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAsp 284642 : GATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGAT : 284698 79 : SerTyrAsnArgIleLysLeuIleGlyProLeuSerPhePheLeuMetSerTyrMetL : 98 ! !!!..!:!||||||:!!||||||||||||||||||! !:!!|||:!! !!:| LeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleL 284699 : CTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCA : 284758 99 : ysTyrTyrLeuMetLeuLeuHisLysAsnAspIleLeuLysCysValGlnGlnValGl : 117 ||||||||:!!:!::!!! !!.! ..! ! ||| !:!!||||||:!!.!.:!!!: ysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIleAr 284759 : AGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCG : 284815 118 : nArgAsp{Tr} >>>> Target Intron 1 >>>> {p}AlaAsnAlaArgHis : 125 : !|||{||} 1012 bp {|} !::: !!! ... gAlaAsp{Tr}++ +-{p}LeuSerHisSerGln 284816 : TGCGGAC{TG}gt.........................ac{G}CTTTCGCATAGtcaa : 285851 126 : LeuAsnAspArgAsnIleMetGlyIleAsnAlaAsnTyrGlyArgLysLeuValValV : 145 ...:::|||...|||||| !! !!:!|||!.. !||||||...|||!.!:!! GluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIleP 285852 : gaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCT : 285911 146 : alSerAlaPhePheMetSerSerSerTyrIlePhePheTyrIleAlaMetProIleSe : 164 !!!!!||| !||||||! !|||.!! .!!|||!:! !! !.!||||||:!:!! heCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCy 285912 : TCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTG : 285968 165 : rValGlyArgIleProAlaValAspGlyAsnPheThrPheIleValLeuProPhePro : 183 !..!! !|||! ! !:!!||| ||| ||| ! ! ! !! ! !!|||||| sThrValArgThrGluIleIleAsp---AsnGluThrValArgSerGlnAlaPhePro 285969 : CACAGTACGCACGGAGATCATCGAC---AACGAGACCGTGAGATCTCAAGCGTTCCCG : 286022 184 : SerSerThrArgIlePheAspTyrArgHisSerProPheAsnGluIlePhePheValV : 203 ! !! ! ! !!:!!.!!||| ||| !||||||! !|||||| ! !!: IleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheM 286023 : ATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCA : 286082 204 : alGlnCysLeuAlaGlyThrIleLeuHisMetIleThrValGlyAlaCysSerLeuAl : 222 !!||||||||||||!.! !:!!:!!:!! !:!!||||||||||||||||||||||| etGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAl 286083 : TGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGC : 286139 223 : aAlaThrPheAlaValHisAlaCysGlyGlnMetGluIleLeuMetAsnTrpLeuGlu : 241 ||||..!|||!.!:!!|||!.!|||||||||.!...!||||||:!!!.. !|||!!: aAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAsp 286140 : TGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGAT : 286196 242 : HisLeuIleSerGlyArgValAspMetLys<-><->AspThrValAspGlyArgIleA : 259 ! |||:!!..!||| ! !! ! !||| ..!||| !!!: !|||:!:! LysLeuValAspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuG 286197 : AAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGG : 286256 260 : laSerIleValGluGlnHisValArgIleLeu : 269 .!..!|||:!!|||!!.|||:!!!:!|||||| lyAspIleIleGluHisHisLeuLysIleLeu 286257 : GAGATATCATCGAGCATCATCTGAAGATACTG : 286288 vulgar: gi|383850686|ref|XP_003700914.1| 22 269 . KQ414889.1 284526 286288 + 377 M 19 57 G 0 3 M 34 102 G 0 3 M 44 132 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 52 156 G 1 0 M 78 234 G 0 6 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284527 286288 377 + . gene_id 13 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284527 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284527 284825 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286288 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286288 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284527 286288 377 + . alignment_id 13 ; Query gi|383850686|ref|XP_003700914.1| ; Align 284527 23 57 ; Align 284587 42 102 ; Align 284692 76 132 ; Align 285839 121 156 ; Align 285995 174 234 ; Align 286235 252 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 362 Query range: 20 -> 270 Target range: 266634 -> 267390 21 : AsnLeuSerIleGlnPheSerArgTrpLeuLeuArgProValGlyValTrpProLysS : 40 :!!! !|||:!:|||!!.!:!||||||!!!|||!:!|||:!!|||!.!|||||| !! AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProL 266635 : GATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGT : 266692 41 : erGluValThr<->ArgIleAspLysTyrPheThrTrpLeuValAsnSerLeuCysSe : 58 !..!:!!||| !:!:!!!!:::! ! !!:!!!:: !:!!! ! !:!!|||! euSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266693 : TGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 59 : rThrLeuLeuSerPheLeuPheValProCysLeuValPheLeuIleLeuAspValSer : 77 ! !! !:!! !||| ! ! :!!||||||||| !! !|||:!!|||!!:! !..! rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 78 : AspSerTyrAsnArgIleLysLeuIleGlyProLeuSerPhePheLeuMetSerTyrM : 97 ..!! ! !!..!:!:!:|||:!!.!!|||||||||||| !!::!!!:!:.!! ! SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 98 : etLysTyrTyrLeuMetLeuLeuHisLysAsnAspIleLeuLysCysValGlnGlnVa : 116 !:!!.||| ! !:!!||||||!.!!..!!.!!:|||! ! ||||||:!!!!.:! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 117 : lGlnArgAspTrpAlaAsnAlaArgHisLeuAsnAspArgAsnIleMetGlyIleAsn : 135 !|||! !|||||| !! !!.!! !...! !.!.|||!:!.!.:!:||| !! ||| tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 136 : AlaAsnTyrGlyArgLysLeuValValValSerAlaPhePheMetSerSerSerTyrI : 155 |||!.. !|||||| ! :!!!.!:!! !!!!!||| ||||||..!!!!.!! !: AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 156 : lePhePheTyrIleAlaMetProIleSerValGlyArgIleProAlaValAspGlyAs : 174 !! !!:!! !:!: !! ! !!.!!!!!:!! !! !:!: !!.!! !:!!! !!. euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 175 : nPheThrPheIleValLeuProPheProSerSerThrArgIlePheAspTyrArgHis : 193 ! ! ! ! !:!!||||||! ! !! !! !! !!:!!!:.!!! ! ! ! rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 194 : SerProPheAsnGluIlePhePheValValGlnCysLeuAlaGlyThrIleLeuHisM : 213 |||||| ||||||||| !!.!!||| !|||! !:!!:!!||| !|||:!!:!! SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 214 : etIleThrValGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGlyGl : 232 !! !..!|||||||||! !||||||||||||..!||||||!.!|||||||||||||| erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 233 : nMetGluIleLeuMetAsnTrpLeuGluHisLeuIleSer<->GlyArgValAspMet : 250 |:!!...:!:||||||! |||:!!:!!.!.!!!:!:!:! ..!|||! !..!! nLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsn 267272 : GCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAAT : 267328 251 : LysAspThrValAspGlyArgIleAlaSerIleValGluGlnHisValArgIleLeuA : 270 |||:!!..! ! !! !!:!|||!.! !:!!||||||!!.|||:!!|||:!!|||| LysAsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeuA 267329 : AAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGA : 267388 271 : rg : 270 || rg 267389 : GG : 267390 vulgar: gi|383850686|ref|XP_003700914.1| 20 270 . KQ414889.1 266634 267390 + 362 M 23 69 G 0 3 M 202 606 G 0 3 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266635 267390 362 + . gene_id 14 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266635 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266635 267390 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266635 267390 362 + . alignment_id 14 ; Query gi|383850686|ref|XP_003700914.1| ; Align 266635 21 69 ; Align 266707 44 606 ; Align 267316 246 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 316 Query range: 267 -> 393 Target range: 286690 -> 287222 268 : IleLeuArgPheLeuGluLeuMetGluLysLeuLeuGlnGlnIleSerCysValGluC : 287 |||!!!!!!|||:!!..!! !!!:||| !||||||.!.:!!|||!!!! !|||||| IlePheSerPheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluV 286691 : ATTTTCAGTTTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGG : 286748 288 : ysLeuGlyCysMetMetAsnLeuCysLeuLeuGlyTyrTyrCysIleMet >>>> T : 304 :!!||||||! !:!!|||:!!|||!!!||||||||||||! :!:! ! alIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeuThr++ 286749 : TGATTGGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTACTGACGgt...... : 286801 305 : arget Intron 1 >>>> GluTrpAsnProLysGluLeuThrPheSerLeuThrT : 316 80 bp ||||||.!.! !!..||| !! ! !!!:!!|||| ++GluTrpGluGlnSerGluThrIleGlyThrIleThrT 286802 : ...................agGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGT : 286915 317 : yrIleLeuLeuIleSerTyrPheGlyPheAsnIlePheIlePheCysTyrIleGlyGl : 335 || ! !|||:!: !! !||| !||||||:!!||||||.!!|||||||||||||| yrCysThrLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGl 286916 : ATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGA : 286972 336 : uLeuValAlaGluGln >>>> Target Intron 2 >>>> CysLysLysValG : 345 |:!!:!!:!!|||||| 74 bp ||| !||||||| uIleLeuSerGluGln++ ++CysLeuLysValG 286973 : AATTCTCTCCGAACaggt.........................agtGCTTAAAAGTCG : 287076 346 : lyGluValSerTyrMetIleGluTrpHisArgLeuSerGlyLysLysLysLeuCysCy : 364 || ! !!!!|||||||||!!:|||:!!|||||| !!||||||! ! ! ! !!! lyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLe 287077 : GCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTT : 287133 365 : sIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetVal : 383 |||||||||.!!|||:!!||||||||||||||||||||||||||||||!!.!!::!! uIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIle 287134 : GATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATC : 287190 384 : GluLeuSerIleSerThrPheSerAspIle : 393 !!:||||||:!!|||!:!|||!!!..!:!: AspLeuSerLeuSerSerPheCysSerVal 287191 : GATCTCTCTTTAAGCAGCTTCTGCAGCGTG : 287222 vulgar: gi|383850686|ref|XP_003700914.1| 267 393 . KQ414889.1 286690 287222 + 316 M 36 108 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286691 287222 316 + . gene_id 15 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286691 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286691 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287222 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287222 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286691 287222 316 + . alignment_id 15 ; Query gi|383850686|ref|XP_003700914.1| ; Align 286691 268 108 ; Align 286879 304 111 ; Align 287064 341 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 299 Query range: 301 -> 393 Target range: 224317 -> 224658 302 : IleMetGluTrpAsnProLysGluLeuThrPheSerLeuThrTyrIleLeuLeuIleS : 321 .!!...||||||::: ....!.|||||| !:!!:!!||||||.!!:!!|||:!!! PheGlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuM 224318 : TTTCaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCA : 224375 322 : erTyrPheGlyPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl : 340 !! ... ||||||||||||||||||||||||||||||||||||||||||||||| etSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl 224376 : TGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAca : 224432 341 : nCysLys{L} >>>> Target Intron 1 >>>> {ys}ValGlyGluValSer : 348 | |||{|} 65 bp {||}:::|||::!|||||| nValLys{L}-+ +-{ys}IleGlyGlnValSer 224433 : ggtgaaa{a}at.........................aa{aa}attggacaAGTGTCG : 224521 349 : TyrMetIleGluTrpHisArgLeuSerGlyLysLysLysLeuCysCysIleLeuIleI : 368 |||||||||!!:|||:!!||||||!!!|||!!.||||||||||||||||||||||||| TyrMetIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleI 224522 : TACATGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAA : 224581 369 : leAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIl : 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||!!!:! leAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLe 224582 : TCGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCT : 224638 388 : eSerThrPheSerAspIle : 393 !!!!||||||.!!|||:!! uThrThrPheGlyAspVal 224639 : AACCACTTTCGGTGACGTA : 224658 vulgar: gi|383850686|ref|XP_003700914.1| 301 393 . KQ414889.1 224317 224658 + 299 M 41 123 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224318 224658 299 + . gene_id 16 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224318 224441 . + . KQ414889.1 exonerate:protein2genome:local exon 224318 224441 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224442 224443 . + . intron_id 1 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local intron 224442 224506 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224505 224506 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 224507 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224507 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224318 224658 299 + . alignment_id 16 ; Query gi|383850686|ref|XP_003700914.1| ; Align 224318 302 123 ; Align 224509 344 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 251 Query range: 17 -> 274 Target range: 204224 -> 204992 18 : LysAsnValAsnLeuSerIleGlnPheSerArgTrpLeuLeuArgProValGlyValT : 37 :!!:!!:!!!..! !:!!! !!::||| !!:! !:!!||| !! !||||||!.!| GluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaT 204225 : GAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGT : 204282 38 : rpProLysSerGluValThrArgIleAspLysTyrPheThrTrpLeuValAsnSerLe : 56 |||||! !!! ! !:!! ! !! ! .!...! !!! !:!!.!. !:! rpProIleProValAsnSerSerProPheThrArgLeuValArgArgIleGluHisVa 204283 : GGCCGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGT : 204339 57 : uCysSerThrLeuLeuSerPheLeu<->PheValProCysLeuValPheLeuIleLeu : 74 ! !!!! ...||| |||||| .!!|||||| !!|||:!!!:!:!!.!!||| lValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheLeu 204340 : AGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTG : 204396 75 : AspValSerAspSerTyrAsnArgIleLysLeuIleGlyProLeuSerPhePheLeuM : 94 ! ! !!.!:!!.!! ! ! !|||:!:|||:!!:!!||||||:!! ! !! ! !! LysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSerI 204397 : AAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCA : 204456 95 : etSerTyrMetLysTyrTyrLeuMetLeuLeuHisLysAsnAspIleLeuLysCysVa : 113 !:..!!:!.!.||||||! !:!!!!:|||! !!..! :!! ! |||! !||| !!:! leGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSerLe 204457 : TACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGTTT : 204513 114 : lGlnGlnValGlnArgAspTrpAlaAsnAlaArgHisLeuAsnAspArgAsnIleMet : 132 !.!. :!!::!||||||||| !.!.|||! ! !! !||| ||| |||.!. uAsnThrIleArgArgAspTrpIleGluAlaThrAspGluAsn---ArgLeuIlePhe 204514 : GAACACCATCAGACGCGACTGGATAGAGGCTACGGATGAAAAT---CGGTTGATTTTC : 204567 133 : GlyIleAsnAlaAsnTyrGlyArgLysLeuValValValSerAlaPhePheMetSerS : 152 !! !!.|||!!. !||||||!:!:!!:!!:!!:!!:!!||| ! !|||! !. ArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetTyrG 204568 : CGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGTACG : 204627 153 : erSerTyrIlePhePheTyrIleAlaMetProIleSerValGlyArgIleProAlaVa : 171 !!.!! !:!:! !!:! ! !:!:|||:!:! ! !|||! !||| !.!! lyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleValThrPr 204628 : GCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTAACACC : 204684 172 : lAspGlyAsnPheThrPheIleValLeuProPheProSerSerThrArgIlePheAsp : 190 !||| ||| !!|||.!.! !||||||! !||| ! ...|||::: oAsp---AsnValThrIleArgProLeuProCysProValTyrPheValPhePheAsn 204685 : TGAT---AACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaac : 204738 191 : TyrArgHisSerProPheAsnGluIlePhePheValValGlnCysLeuAlaGlyThrI : 210 ! !:!!.!|||||| ! !!|||||| !!|||:!!:!!||| !:!!|||||| !: GluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheV 204739 : GAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTG : 204798 211 : leLeuHisMetIleThrValGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAl : 229 !! !:!! :!!! ! !|||.!!|||.!!:!!..!||| !|||!.!:!!||||| alThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAl 204799 : TTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGC : 204855 230 : aCysGlyGlnMetGluIleLeuMetAsnTrpLeuGluHisLeuIleSerGlyArgVal : 248 ||||.!!..!:!!..!||||||:!!||| !:!!.!. |||:!:..! ! !! ! aCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAlaAsp 204856 : GTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCGGAC : 204912 249 : AspMetLysAspThrValAspGlyArgIleAlaSerIleValGluGlnHisValArgI : 268 ! :!! !||| !! !!!:!||||||..!||||||||| ! !!...!!:!| MetThrGluThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrLysI 204913 : ATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGAAGA : 204972 269 : leLeuArgPheLeuGluLeu : 274 || !|||! :!!|||:!! leLysArg***ValGluVal 204973 : TAAAGAGGTGAGTGGAAGTT : 204992 vulgar: gi|383850686|ref|XP_003700914.1| 17 274 . KQ414889.1 204224 204992 + 251 M 47 141 G 0 3 M 63 189 G 1 0 M 44 132 G 1 0 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204225 204992 251 + . gene_id 17 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204225 204992 . + . KQ414889.1 exonerate:protein2genome:local exon 204225 204992 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 204225 204992 251 + . alignment_id 17 ; Query gi|383850686|ref|XP_003700914.1| ; Align 204225 18 141 ; Align 204369 65 189 ; Align 204558 129 132 ; Align 204690 174 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 240 Query range: 303 -> 393 Target range: 280091 -> 280435 304 : GluTrpAsnProLysGluLeuThrPheSerLeuThrTyrIleLeuLeuIleSerTyrP : 323 ||||||.!.! !!!.!!: !! ! !!!!!!||||||:!!:!!!!!:!!! !! !! GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerL 280092 : GAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTT : 280149 324 : heGlyPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln >>> : 341 !. !||||||:!!||||||.!!|||||||||||||||:!!:!!:!!|||||| euThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 280150 : TAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt... : 280205 342 : > Target Intron 1 >>>> CysLysLysValGlyGluValSerTyrMetIleG : 352 74 bp ||| !|||||||||! ! !!!!|||||||||! ++CysLeuLysValGlyValSerThrTyrMetIleA 280206 : ......................agTGCTTAAAAGTCGGCGTGTCAACTTACATGATCG : 280310 353 : luTrpHisArgLeuSerGlyLysLysLysLeuCysCysIleLeuIleIleAlaMetSe : 371 !:|||:!!|||||| !!||||||||| !! ! !!! |||||||||.!!|||:!!|| spTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaValSe 280311 : ACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCGTGTC : 280367 372 : rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPhe : 390 ||||||||||||||||||||||||||||!!.!!::!!!!:||||||:!!|||!:!||| rAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPhe 280368 : GAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTC : 280424 391 : SerAspIle : 393 !!!..!:!: CysSerVal 280425 : TGCAGCGTG : 280435 vulgar: gi|383850686|ref|XP_003700914.1| 303 393 . KQ414889.1 280091 280435 + 240 M 37 111 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280092 280435 240 + . gene_id 18 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280435 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280435 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280092 280435 240 + . alignment_id 18 ; Query gi|383850686|ref|XP_003700914.1| ; Align 280092 304 111 ; Align 280277 341 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 239 Query range: 0 -> 241 Target range: 194108 -> 194825 1 : MetLysLysThrValThrGlnThrThrAlaLeuAspThrGlnAspTyrThrLysAsnV : 20 ||| ::: :::...::: ::: !! ! !!.! :!!|||! ! !:!!. MetValGluGluIleAlaLysLysSerAsnTyrArgAsnValAsnTyrLysLeuAspT 194109 : ATGGTCgaagaaatcgcgaagaaatcgAATTACCGCAACGTCAATTACAAATTGGACA : 194166 21 : alAsnLeuSerIleGlnPheSerArgTrpLeuLeuArgProValGlyValTrpProLy : 39 .!.!.! !:!!:!!!:! ! :!!!:! !||||||! !|||:!!|||:!!||||||!: hrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProAr 194167 : CCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAAG : 194223 40 : sSerGluValThrArgIleAspLysTyrPheThrTrpLeuValAsnSerLeuCysSer : 58 !..!!!: ! !||| |||!:! ! !!:: ! !!.!.!!:!! !! ! gGluAspSerLeuArg---AspArgValArgLeuPheAlaGlnThrGlyValValPhe 194224 : GGAGGATTCTCTTCGC---GACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTTC : 194277 59 : ThrLeuLeuSerPheLeuPheValProCysLeuValPheLeuIleLeuAspValSerA : 78 .!!|||:!!!!!||||||.!.|||||| !:!!:!!!:! ! !!!!||| !..!| AlaLeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCysGluA 194278 : GCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAGG : 194337 79 : spSerTyrAsnArgIleLysLeuIleGlyProLeuSerPhePheLeuMetSerTyrMe : 97 || ! !.. !!!:|||:!!|||!.! !!! ! !||| !|||:!!:!! !!! spLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleIl 194338 : ATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCAT : 194394 98 : tLysTyrTyrLeuMetLeuLeuHisLysAsnAspIleLeuLysCysValGlnGlnVal : 116 :|||!:!!:: !|||:!!:!!:!!!:!!!.!!:||| ! |||:!!! !:!!:!! eLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGluMet 194395 : CAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGATG : 194451 117 : GlnArgAspTrpAlaAsnAlaArgHisLeuAsnAspArgAsnIleMetGlyIleAsnA : 136 :!!! !.!.!:: !:!!!.!..! ! !.!.||||||.!.:!:||| !! ! !| GluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsnCysA 194452 : GAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGCG : 194511 137 : laAsnTyrGlyArgLysLeuValValValSerAlaPhePheMetSerSerSerTyrIl : 155 ||!!. !|||||| !!!..!..!:!!! ! ! .!! ! !.!!.!! !:! laLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaLe 194512 : CGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTTT : 194568 156 : ePhePheTyrIleAlaMetProIleSerValGlyArgIleProAlaValAspGlyAsn : 174 : !:!:!!||| !:!:|||:!:! ! !! !|||||| ! !! !||| ||| uProTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGluAsp---Asn 194569 : GCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGAT---AAC : 194622 175 : PheThrPheIleValLeuProPheProSerSerThrArgIlePheAspTyrArgHisS : 194 !||| ||| !||||||!:! !|||!:! ! !.!!|||! !..! !!| SerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAspS 194623 : AGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGACT : 194682 195 : erProPheAsnGluIlePhePheValValGlnCysLeuAlaGlyThrIleLeuHisMe : 213 |||||.!! !!|||||| |||||| !||| ||| !.!!!:!|||:!! erProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuSe 194683 : CGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGTC : 194739 214 : tIleThrValGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGlyGln : 232 !! !.! !||| !! !||||||!.!||||||.!! !:!!|||..!|||||| ! rThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGlyLeu 194740 : GACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTTG : 194796 233 : MetGluIleLeuMetAsnTrpLeuGlu : 241 .!.|||:!: !! !.. !!:!!||| PheGluValThrSerArgArgMetGlu 194797 : TTCGAAGTGACCAGCAGAAGGATGGAG : 194825 vulgar: gi|383850686|ref|XP_003700914.1| 0 241 . KQ414889.1 194108 194825 + 239 M 44 132 G 1 0 M 127 381 G 1 0 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194109 194825 239 + . gene_id 19 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194109 194825 . + . KQ414889.1 exonerate:protein2genome:local exon 194109 194825 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 194109 194825 239 + . alignment_id 19 ; Query gi|383850686|ref|XP_003700914.1| ; Align 194109 1 132 ; Align 194241 46 381 ; Align 194622 174 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 236 Query range: 177 -> 273 Target range: 202682 -> 203164 178 : IleValLeuProPheProSerSerThrArgIlePheAspTyrArgHisSerProPheA : 197 :!! !:!! !!||| !!! !||| ! !|||.!!||| !|||:!!|||||| ! | LeuSerValThrPheSerPheSerGlyPheIleIleAspValArgTyrSerProValA 202683 : CTTAGTGTGACGTTCTCCTTCTCAGGATTTATCATTGATGTTAGATACAGTCCTGTGA : 202740 198 : snGluIlePhePheValValGlnCysLeuAlaGlyThrIleLeuHisMetIleThrVa : 216 |||||||||||||| !:!!!:! !:!!|||! !! !:!!:!!||| :!!||||| snGluIlePhePheSerIleArgIleValAlaValIleLeuIleHisGlyValThrVa 202741 : ACGAGATCTTCTTCTCGATTCGAATCGTAGCTGTCATCCTAATTCACGGTGTCACTGT : 202797 217 : lGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGlyGlnMetGluIle : 235 ||||||||||!!!|||.!!||| !||||||||||||! !||||||||||||!!::!! lGlyAlaCysCysLeuThrAlaLeuPheAlaValHisAspCysGlyGlnMetAspVal 202798 : AGGAGCTTGTTGCTTGACAGCGTTGTTTGCGGTTCACGATTGCGGCCAGATGGACGTT : 202854 236 : LeuMetAsnTrpLeuGluHisLeuIleSerGlyArgValAspMet{L} >>>> Tar : 251 |||||| !|||||||||||||||!!:..!|||||| !||||||{|} LeuMetAlaTrpLeuGluHisLeuMetAspGlyArgSerAspMet{L}++ 202855 : TTGATGGCCTGGCTGGAACATTTGATGGATGGTCGTTCGGATATG{A}gt........ : 202905 252 : get Intron 1 >>>> {ys}AspThrValAspGlyArgIleAlaSerIleValGl : 263 194 bp {||}.!.!.!|||:!!||||||!!:!.!!!!||||||.. -+{ys}GlnAsnValAsnGlyArgMetValThrIleValSe 202906 : .................tg{AG}CAAAATGTGAATGGCAGAATGGTGACCATCGTGAG : 203132 264 : uGlnHisValArgIleLeuArgPheLeuGlu : 273 .||||||:!!|||||||||!:!! !:!!||| rGlnHisIleArgIleLeuLysCysValGlu 203133 : CCAACACATACGGATACTGAAATGTGTGGAA : 203164 vulgar: gi|383850686|ref|XP_003700914.1| 177 273 . KQ414889.1 202682 203164 + 236 M 73 219 S 0 1 5 0 2 I 0 190 3 0 2 S 1 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202683 203164 236 + . gene_id 20 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 202683 202902 . + . KQ414889.1 exonerate:protein2genome:local exon 202683 202902 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 202903 202904 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 202903 203096 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 203095 203096 . + . intron_id 0 ; splice_site "TG" KQ414889.1 exonerate:protein2genome:local cds 203097 203164 . + . KQ414889.1 exonerate:protein2genome:local exon 203097 203164 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202683 203164 236 + . alignment_id 20 ; Query gi|383850686|ref|XP_003700914.1| ; Align 202683 178 219 ; Align 203099 252 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 225 Query range: 119 -> 270 Target range: 304425 -> 304869 120 : TrpAlaAsnAlaArgHisLeuAsnAspArgAsnIleMetGlyIleAsnAlaAsnTyrG : 139 !::! !.!.!.!..! !|||!..||||||.!.!!:||| !! ! !!!.!.!. | TyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetG 304426 : TATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGG : 304483 140 : lyArgLysLeuValValValSerAlaPhePheMetSerSerSerTyrIlePhePheTy : 158 |||||!!.|||..!:!!:!!!!!|||.!.||||||! !!!!.!! !! !.!!!:!:! lyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHi 304484 : GTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCA : 304540 159 : rIleAlaMetProIleSerValGlyArgIleProAlaValAspGlyAsnPheThrPhe : 177 !! !.!|||! !.!!:!!..!|||! ! ! !.!! !!!: !||| !|||.!! sThrValMetGlnPheAlaThrGlyThrTyr---ValAspGluTyrAsnArgThrIle 304541 : CACGGTCATGCAGTTCGCGACCGGAACGTAT---GTGGATGAGTATAATCGTACGATT : 304594 178 : IleValLeuProPheProSerSerThrArgIlePheAspTyrArgHisSerProPheA : 197 ! ! !||| !!:!|||!!!! !!:! !:!!|||||| !!:! ||||||.!! LysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIleT 304595 : AAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTT : 304654 198 : snGluIlePhePheValValGlnCysLeuAlaGlyThrIleLeuHisMetIleThrVa : 216 !!|||:!: !!!:! !!|||!!.|||:!!..!||| !:!!:!!:!! ||||||!. yrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThrAl 304655 : ACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGC : 304711 217 : lGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGlyGlnMetGluIle : 235 !|||||||||.!!||||||||| !||||||..!|||||||||||||||!!:!!:||| aGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIle 304712 : TGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATC : 304768 236 : LeuMetAsnTrpLeuGluHisLeuIleSerGlyArgValAspMetLysAspThrValA : 255 :!!|||::! ! |||! !!|||:!!!:!.!!!:! ..!..! !:!!| ValMetSerArgLeuGlyAspLeuValAsnSerLys------GluSerSerAspLeuA 304769 : GTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAA------GAATCATCTGATTTAG : 304822 256 : spGlyArgIleAlaSerIleValGluGlnHisValArgIleLeuArg : 270 || !|||:!! !..!|||||||||!!.|||:!!|||||||||||| spLysArgLeuIleGluIleValGluHisHisLeuArgIleLeuArg 304823 : ATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTAAGG : 304869 vulgar: gi|383850686|ref|XP_003700914.1| 119 270 . KQ414889.1 304425 304869 + 225 M 49 147 G 1 0 M 78 234 G 2 0 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304426 304869 225 + . gene_id 21 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304426 304869 . + . KQ414889.1 exonerate:protein2genome:local exon 304426 304869 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 304426 304869 225 + . alignment_id 21 ; Query gi|383850686|ref|XP_003700914.1| ; Align 304426 120 147 ; Align 304573 170 234 ; Align 304807 250 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 221 Query range: 173 -> 340 Target range: 300189 -> 301797 174 : AsnPheThrPheIleValLeuProPheProSerSerThrArgIlePheAspTyrArgH : 193 |||!:!|||!:!! ! !||| !!!:!|||.!!! ! ! !!.!!.!!||| !:! AsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnT 300190 : AATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAA : 300247 194 : isSerProPheAsnGluIlePhePheValValGlnCysLeuAlaGlyThrIleLeuHi : 212 !|||||| ! !!|||||| ||| ...|||.!!|||!.!! !|||:!!:! hrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTy 300248 : CCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTA : 300304 213 : sMetIleThrValGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGly : 231 !! :!:|||..!!.!|||! !||||||||||||! !|||!.!..!||| !|||||| rAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGly 300305 : CAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGA : 300361 232 : GlnMetGluIleLeuMetAsnTrpLeuGluHisLeuIleSerGlyArgValAspMetL : 251 |||!!::!!|||! !||| ! |||||| !!|||:!:..! |||..!! !| GlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGlu---ArgThrGlyGluL 300362 : CAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAG---AGGACGGGAGAGA : 300418 252 : ysAspThrValAspGlyArgIleAlaSerIleValGluGlnHisValArgIleLeu{A : 270 ||||| !! ! !! !! !:!:!.! !||||||..!.!.||||||!:!:!!|||{| ysAspAspGlyProAspProLeuValValIleValArgAspHisValLysValLeu{A 300419 : AGGACGACGGTCCTGATCCTTTGGTCGTTATCGTTCGAGATCACGTGAAGGTTTTA{A : 300475 271 : r} >>>> Target Intron 1 >>>> {g}PheLeuGluLeuMetGluLysLeu : 278 |} 1110 bp {|} !! ! ! !.!.... !!! ! r}++ ++{g}AspProCysSerPheArg***Pro 300476 : G}gt.........................ag{A}GACCCGTGTTCCTTCCGTTAGCCA : 301609 279 : LeuGlnGlnIleSerCysValGluCysLeuGlyCysMetMetAsnLeuCysLeuLeuG : 298 ! !!.:!!!!!...||| ... ! :!:||| ! !!!||| ThrPheHisLeuCysAlaValIleLysPheGluSerThrLeuAsnAlaLysPheLeuA 301610 : ACTTTTCATCTCTGCgctgtaattaaatttgaatctACTTTAAATGCAAAGTTTTTAC : 301669 299 : lyTyrTyrCysIleMetGluTrpAsnProLysGluLeuThrPheSerLeuThrTyrIl : 317 !! !!! .!! !||||||.!. !!..!!: !! ! !! !||||||!:!.! rgValIle***Phe***GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePh 301670 : GAGTAATTTGATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTT : 301726 318 : eLeuLeuIleSerTyrPheGlyPheAsnIlePheIlePheCysTyrIleGlyGluLeu : 336 ! !|||:!!!!!! ||| !|||||||||||||||||||||||||||||||||:!! eThrLeuLeuThrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIle 301727 : CACTCTGTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATT : 301783 337 : ValAlaGluGln : 340 :!!:!!|||||| LeuSerGluGln 301784 : CTTTCCGAACAG : 301797 vulgar: gi|383850686|ref|XP_003700914.1| 173 340 . KQ414889.1 300189 301797 + 221 M 72 216 G 1 0 M 23 69 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300190 301797 221 + . gene_id 22 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300190 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300190 300476 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300190 301797 221 + . alignment_id 22 ; Query gi|383850686|ref|XP_003700914.1| ; Align 300190 174 216 ; Align 300406 247 69 ; Align 301588 271 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 202 Query range: 303 -> 393 Target range: 277371 -> 277713 304 : GluTrpAsnProLysGluLeuThrPheSerLeuThrTyrIleLeuLeuIleSerTyrP : 323 ||||||::! !!..!!::!! ! ! ! !|||:!!.!!:!!:!!:!!! !! !. GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 324 : heGlyPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln >>> : 341 !. |||||||||||| ! ! |||||||||||||||:!!:!!.!!|||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 342 : > Target Intron 1 >>>> CysLysLysValGlyGluValSerTyrMetIleG : 352 72 bp ||||||||||||||||||||| !||||||! . ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 353 : luTrpHisArgLeuSerGlyLysLysLysLeuCysCysIleLeuIleIleAlaMetSe : 371 !.|||:!! !||| !!! !||| ! ! ||| !! :!!|||||||||:!!! || snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 372 : rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPhe : 390 |!:! ||||||:::|||||||||...::::::::::::|||:!:! !|||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 391 : SerAspIle : 393 .!!|||:!! GlyAspVal 277703 : GGCGATGTA : 277713 vulgar: gi|383850686|ref|XP_003700914.1| 303 393 . KQ414889.1 277371 277713 + 202 M 37 111 5 0 2 I 0 68 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277713 202 + . gene_id 23 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277713 202 + . alignment_id 23 ; Query gi|383850686|ref|XP_003700914.1| ; Align 277372 304 111 ; Align 277555 341 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 200 Query range: 303 -> 393 Target range: 272836 -> 273176 304 : GluTrpAsnProLysGluLeuThrPheSerLeuThrTyrIleLeuLeuIleSerTyrP : 323 ||||||!.! ! ! !!:!!! ! ! ! !||||||.!!:!!:!!:!!! !! !. GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 324 : heGlyPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln >>> : 341 !. ||||||||||||||| |||||||||||||||:!!:!!.!!|||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 342 : > Target Intron 1 >>>> CysLysLysValGlyGluValSerTyrMetIleG : 352 70 bp |||||||||:::||||||||| !||||||! . ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 353 : luTrpHisArgLeuSerGlyLysLysLysLeuCysCysIleLeuIleIleAlaMetSe : 371 !.|||:!! !||| !!|||||| ! ! ||| ! ||||||||||||:!!! !! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 372 : rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPhe : 390 !!:! ! !||||||:!!|||||||||!..!!:||| :!!|||:!:! !|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 391 : SerAspIle : 393 .!!|||:!! GlyAspVal 273166 : GGCGATGTA : 273176 vulgar: gi|383850686|ref|XP_003700914.1| 303 393 . KQ414889.1 272836 273176 + 200 M 37 111 5 0 2 I 0 66 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273176 200 + . gene_id 24 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273176 200 + . alignment_id 24 ; Query gi|383850686|ref|XP_003700914.1| ; Align 272837 304 111 ; Align 273018 341 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 17 -> 199 Target range: 294675 -> 295224 18 : LysAsnValAsnLeuSerIleGlnPheSerArgTrpLeuLeuArgProValGlyValT : 37 !!.:!!||| !|||:!!:!!!:!!!!||| !!||||||!:!|||:!!|||:!!| AsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuT 294676 : AACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTT : 294733 38 : rpPro<-><->LysSerGluValThrArgIleAspLysTyrPheThrTrpLeuValAs : 54 ||||| ! |||.!...!!:!!:!:!::!!||| !.!!:!! :!!:!!! rpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIl 294734 : GGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGAT : 294790 55 : nSerLeuCysSerThrLeuLeuSerPheLeuPheValProCysLeuValPheLeuIle : 73 !:!!! !|||!!! ! !:!! !|||:!!!!.||||||||| ! !|||! !:!! eAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCysVal 294791 : CGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTA : 294847 74 : LeuAspValSerAspSerTyrAsnArgIleLysLeuIleGlyProLeuSerPhePheL : 93 !!! !!|||...::: ::!!!:||||||:!:||||||:!! !!:!! !: PheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerM 294848 : TTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTA : 294907 94 : euMetSerTyrMetLysTyrTyrLeuMetLeuLeuHisLysAsnAspIleLeuLysCy : 112 !!:!:||| :!:!:!||| !! !:!::!!||| ! ! ! !! .!! ! ! || etLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCy 294908 : TGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTG : 294964 113 : sValGlnGlnValGlnArgAspTrpAlaAsnAlaArgHisLeuAsnAspArgAsnIle : 131 |:!!:!!.!.:!!:!!!.!|||||| ! ! !:!!! !.!. !!||| ||| sIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIle 294965 : CATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATC : 295021 132 : MetGlyIleAsnAlaAsnTyrGlyArgLysLeuValValValSerAlaPhePheMetS : 151 ||| !! ||||||! ! !!:!!:!:!!..!|||!.!! !.!!.!!.!.!!:! MetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleIleT 295022 : ATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCT : 295081 152 : erSerSerTyrIlePhePheTyrIleAlaMetProIleSerValGlyArgIleProAl : 170 !|||||| :!:! !:!:!! ! !:::|||... ... :!: ! yrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGluAs 295082 : ACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGAGAA : 295138 171 : aValAspGlyAsnPheThrPheIleValLeuProPheProSerSerThrArgIlePhe : 189 ! ! ! ..!||| |||.!! !!.!||||||.!!|||.!!! ! ! !.!! ! nLysLysAsnAsn---ThrIleArgAlaLeuProIleProGlyTyrGluLeuPheVal 295139 : CAAGAAGAATAAT---ACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTA : 295192 190 : AspTyrArgHisSerProPheAsnGluIle : 199 ||| ! ! !|||||| ! !!|||||| AspAlaTyrSerSerProThrTyrGluIle 295193 : GACGCTTATTCCAGTCCTACCTACGAGATC : 295224 vulgar: gi|383850686|ref|XP_003700914.1| 17 199 . KQ414889.1 294675 295224 + 183 M 21 63 G 0 6 M 136 408 G 1 0 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294676 295224 183 + . gene_id 25 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294676 295224 . + . KQ414889.1 exonerate:protein2genome:local exon 294676 295224 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294676 295224 183 + . alignment_id 25 ; Query gi|383850686|ref|XP_003700914.1| ; Align 294676 18 63 ; Align 294745 39 408 ; Align 295153 176 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 176 Query range: 303 -> 393 Target range: 206050 -> 206401 304 : GluTrpAsnProLysGluLeuThrPheSerLeuThrTyrIleLeuLeuIleSerTyrP : 323 ||||||.!. !!!..!. !||| !:!!..!|||||| !||| ! !! !! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 324 : heGlyPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln >>> : 341 ! !||| !:!!||||||.!.||||||||||||:!!|||:!! !!!:||| ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 342 : > Target Intron 1 >>>> CysLysLysValGlyGluValSerTyrMetIleG : 352 81 bp ! ! |||||| !..!|||! !! !:!:. ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 353 : luTrpHisArgLeuSerGlyLysLysLysLeuCysCysIleLeuIleIleAlaMetSe : 371 !.|||:!!|||||| !!..!!:! ! !! !! ! |||||||||||||||||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 372 : rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPhe : 390 ||||! ! !!||||||||||||||||||!!.||| !!|||:!!|||:!!:!!!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 391 : SerAspIle : 393 !!!|||:!! ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: gi|383850686|ref|XP_003700914.1| 303 393 . KQ414889.1 206050 206401 + 176 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 176 + . gene_id 26 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 176 + . alignment_id 26 ; Query gi|383850686|ref|XP_003700914.1| ; Align 206051 304 111 ; Align 206243 341 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 295 -> 393 Target range: 305076 -> 305783 296 : LeuLeuGlyTyrTyrCysIleMetGluTrpAsnProLysGluLeuThrPheSerLeuT : 315 !!!||| ||| ..!!!:|||.!. !!...!. !..! ! ! !| PheLeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrT 305077 : TTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAA : 305134 316 : hrTyrIleLeuLeuIleSerTyrPheGlyPheAsnIlePheIlePheCysTyrIleGl : 334 |||||! !:!!|||:!:! !! ! ! !|||||||||||||||!!.||||||||||| hrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGl 305135 : CATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGG : 305191 335 : yGluLeuValAlaGluGlnCys{Ly} >>>> Target Intron 1 >>>> {s} : 342 ||||:!!:!! !|||:!! {!.} 413 bp {.} yGluIleLeuMetGluLysVal{Se}-+ ++{r} 305192 : TGAGATTCTTATGGAAAAGGTG{ag}tt.........................ag{T} : 305630 343 : LysValGlyGluValSerTyrMetIleGluTrpHisArgLeuSerGlyLysLysLysL : 362 !..|||||| ! !!!!!:!||||||...|||:!!!.!||| !! !|||! !! !! SerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleH 305631 : AGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATAC : 305688 363 : euCysCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAs : 381 ! !! !|||||||||||||||||||||!:!!:! !! !|||:!!!:!||||||!! isGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLy 305689 : ATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAA : 305745 382 : nMetValGluLeuSerIleSerThrPheSerAspIle : 393 .:!:|||!!:||||||:!!|||||||||.!!:!!:!: sValValAspLeuSerLeuSerThrPheGlyAsnVal 305746 : AGTAGTTGATTTATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: gi|383850686|ref|XP_003700914.1| 295 393 . KQ414889.1 305076 305783 + 146 M 46 138 S 0 2 5 0 2 I 0 409 3 0 2 S 1 1 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305077 305783 146 + . gene_id 27 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305077 305216 . + . KQ414889.1 exonerate:protein2genome:local exon 305077 305216 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305217 305218 . + . intron_id 1 ; splice_site "tt" KQ414889.1 exonerate:protein2genome:local intron 305217 305629 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305628 305629 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305630 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305630 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305077 305783 146 + . alignment_id 27 ; Query gi|383850686|ref|XP_003700914.1| ; Align 305077 296 138 ; Align 305631 343 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 337 -> 393 Target range: 234979 -> 235147 338 : AlaGluGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpHisArgLeuS : 357 .!!:!!||||||! |||||||||||| ! !||||||! !||||||:!!|||||| ThrGlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuP 234980 : ACTCAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTAC : 235037 358 : erGlyLysLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnSerSerIleLy : 376 !! !|||! ||| !!! :!!:!!||||||:!!! !|||!:!! ! !||||| roHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLy 235038 : CTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAA : 235094 377 : sLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerAspIle : 393 |:!!|||||||||!!..!.:!!:!!:!!|||:!!:!!||||||.!!|||:!: sIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235095 : AATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: gi|383850686|ref|XP_003700914.1| 337 393 . KQ414889.1 234979 235147 + 143 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234980 235147 143 + . gene_id 28 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234980 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234980 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234980 235147 143 + . alignment_id 28 ; Query gi|383850686|ref|XP_003700914.1| ; Align 234980 338 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 339 -> 399 Target range: 238625 -> 238805 340 : GlnCysLysLysValGlyGluValSerTyrMetIleGluTrpHisArgLeuSerGlyL : 359 |||||| !||||||||||||||| !||||||! !!!:|||:!! !||| !! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 360 : ysLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuTh : 378 :!!:!! ||| !! |||||||||||| ! |||||| ! !:!!|||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 379 : rAlaGlyAsnMetValGluLeuSerIleSerThrPheSerAspIleValLysThrAla : 397 |||||||!!.:!::!!.!.:!!|||:!!! !||||||.!!|||:!! !:!!||| ! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 398 : ValAla : 399 :!!||| LeuAla 238798 : CTTGCT : 238805 vulgar: gi|383850686|ref|XP_003700914.1| 339 399 . KQ414889.1 238625 238805 + 139 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238805 139 + . gene_id 29 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238805 139 + . alignment_id 29 ; Query gi|383850686|ref|XP_003700914.1| ; Align 238626 340 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 10 -> 119 Target range: 299656 -> 299989 11 : LeuAspThrGlnAspTyrThrLysAsnValAsnLeuSerIleGlnPheSerArgTrpL : 30 ||| !.! ! !!||| !!!.:!!:!!:!!! !!!!:!:|||.!.!!!!:!|||| LeuArgAsnTyrHisTyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpL 299657 : TTGAGGAATTACCATTACCAAAATGACATACATTACACGCTGCAAATGTGCCAATGGT : 299714 31 : euLeuArgProValGlyValTrpPro<-><->LysSerGluValThrArgIleAspLy : 47 |||||!:!|||:!!|||||||||! ! ! ..!... !!:!!:!:!:!!: ! euLeuLysProIleGlyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHi 299715 : TGTTGAAACCTATCGGAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACA : 299771 48 : sTyrPheThrTrpLeuValAsnSerLeuCysSerThrLeuLeuSerPheLeuPheVal : 66 ! !!:!! :!!:!!! !!!:!!|||! !:!! !|||! !|||:!! !!:!! sLeuValSerIleValLeuMetThrIleCysPheSerSerLeuPhePheIleValLeu 299772 : CCTCGTCTCGATCGTTCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTG : 299828 67 : ProCysLeuValPheLeuIleLeuAspValSerAspSerTyrAsnArgIleLysLeuI : 86 |||! ! ! !!:!:!!.!!!!!! ! !!.!..!! !:!! !!:!:!:|||:!!. ProSerGlyHisTyrIlePhePheAlaGluLysSerIleHisValLysValLysValP 299829 : CCATCCGGTCATTACATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTAT : 299888 87 : leGlyProLeuSerPhePheLeuMetSerTyrMetLysTyrTyrLeuMetLeuLeuHi : 105 !!||||||:!!.!!|||! !||| ||| !:!:||||||! !! !:!:! !|||:! heGlyProValGlyPheCysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAs 299889 : TCGGTCCGGTTGGTTTTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAA : 299945 106 : sLysAsnAspIleLeuLysCysValGlnGlnValGlnArgAsp : 119 ! ..!! .!! !::!|||:!!|||!!.|||:!!|||||| nGlyGlyAlaPheGluArgCysIleGlnHisValGluArgAsp 299946 : CGGTGGCGCGTTCGAACGATGCATCCAACACGTCGAGAGAGAC : 299989 vulgar: gi|383850686|ref|XP_003700914.1| 10 119 . KQ414889.1 299656 299989 + 137 M 28 84 G 0 6 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299657 299989 137 + . gene_id 30 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299657 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299657 299989 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299657 299989 137 + . alignment_id 30 ; Query gi|383850686|ref|XP_003700914.1| ; Align 299657 11 84 ; Align 299747 39 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 339 -> 393 Target range: 264723 -> 264885 340 : GlnCysLysLysValGlyGluValSerTyrMetIleGluTrpHisArgLeuSerGlyL : 359 |||||||||||||||||||||||| !|||||| .!.|||:!! !||| !! !| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 360 : ysLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuTh : 378 || ! ! ||| ! |||||||||||| !! |||!:! ! !.!!|||!!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 379 : rAlaGlyAsnMetValGluLeuSerIleSerThrPheSerAspIle : 393 |||||||!!.!!::!!.!.:!!|||!!:! !||||||||||||:!! rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: gi|383850686|ref|XP_003700914.1| 339 393 . KQ414889.1 264723 264885 + 129 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264885 129 + . gene_id 31 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264885 129 + . alignment_id 31 ; Query gi|383850686|ref|XP_003700914.1| ; Align 264724 340 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 266 -> 303 Target range: 224128 -> 224239 267 : ArgIleLeuArgPheLeuGluLeuMetGluLysLeuLeuGlnGlnIleSerCysValG : 286 !:! !! !||||||||| !! !! |||||| !|||||||||:!!|||! !|||| LysCysCysArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValG 224129 : AAATGTTGCAGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGG : 224186 287 : luCysLeuGlyCysMetMetAsnLeuCysLeuLeuGlyTyrTyrCysIleMet : 303 ||! !||||||||||||:!!|||:!!|||||||||||||||||| !|||:!! luPheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleVal 224187 : AATTTCTAGGCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTG : 224239 vulgar: gi|383850686|ref|XP_003700914.1| 266 303 . KQ414889.1 224128 224239 + 120 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224129 224239 120 + . gene_id 32 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224129 224239 . + . KQ414889.1 exonerate:protein2genome:local exon 224129 224239 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224129 224239 120 + . alignment_id 32 ; Query gi|383850686|ref|XP_003700914.1| ; Align 224129 267 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 338 -> 393 Target range: 283273 -> 283438 339 : GluGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpHisArgLeuSerG : 358 ..!|||||||||||||||||||||||| !||||||! .!.! ! ! !||| !!! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 359 : lyLysLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLe : 377 !||| ! ! ||| !! :!!|||||||||:!!! |||!:! ||||||:: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 378 : uThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerAspIle : 393 :||||||......:::::::::::!||| ! !||||||..!|||:!! eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspVal 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTA : 283438 vulgar: gi|383850686|ref|XP_003700914.1| 338 393 . KQ414889.1 283273 283438 + 113 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283438 113 + . gene_id 33 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283438 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283438 113 + . alignment_id 33 ; Query gi|383850686|ref|XP_003700914.1| ; Align 283274 339 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 321 -> 393 Target range: 297587 -> 297803 322 : TyrPheGlyPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlnC : 341 ||| !!..!!:!!..!!:||| !! ! !!! !..!...! !|||:!! |||. TyrValAsnTyrThrMetPheHisSerThrAspThrAsnSer***ValSerCysGlnA 297588 : TATGTTAATTATACGATGTTTCATTCAACCGATACAAATAGCTAAGTTTCTTGTCAGG : 297645 342 : ysLysLysValGlyGluValSerTyrMetIleGluTrpHisArgLeuSerGlyLysLy : 360 .!:!!||| !!|||.!.!.!:!!|||! |||||||||:!!!.!||| !! !!!.!: laGluLysPheGlyAsnAlaAlaTyrAsnIleGluTrpTyrAsnLeuProProAsnAr 297646 : CTGAAAAATTCGGCAATGCAGCTTATAACATCGAATGGTACAACTTACCGCCAAACAG : 297702 361 : sLysLeuCysCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAla : 379 ! ||| ! :!:|||!!:|||!.!!!::!!!!.! ! !! !:!||||||... gAlaLeuAspLeuValLeuMetIleGlyIleAlaLysPheProProArgLeuThrGly 297703 : GGCTCTCGATCTGGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCACAggt : 297759 380 : GlyAsnMetValGluLeuSerIleSerThrPheSerAspIle : 393 |||...::: ::::::||||||!:!|||||||||! !:!! GlyLysIlePheAspIleSerIleAsnThrPheSerAlaVal 297760 : ggaaaaatattcgatatatCGATAAACACGTTCAGTGCCGTA : 297803 vulgar: gi|383850686|ref|XP_003700914.1| 321 393 . KQ414889.1 297587 297803 + 103 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297588 297803 103 + . gene_id 34 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297588 297803 . + . KQ414889.1 exonerate:protein2genome:local exon 297588 297803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297588 297803 103 + . alignment_id 34 ; Query gi|383850686|ref|XP_003700914.1| ; Align 297588 322 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 336 -> 402 Target range: 292380 -> 292578 337 : ValAlaGluGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpHisArgL : 356 ||| ! ! ||| !!!..:!!:!!!.!.!.!.!|||||| ! !||||||:!!!.!| ValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnL 292381 : GTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATC : 292438 357 : euSerGlyLysLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnSerSerIl : 375 || !! !!::!||| ! ! ! !:!!|||:!::!!|||!!:!!!!!. ! !!|| euProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIl 292439 : TGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGAT : 292495 376 : eLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerAspIleVal : 394 ||||||||||||||||!!.!!: !!! ||||||:!:!:!||||||.!!! !:!! ! eLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArg 292496 : CAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGT : 292552 395 : LysThrAlaValAlaPheLeuAsn : 402 :!!:!! !:!!!.!!!.:!!:!! GluSerLysLeuValLeuIleHis 292553 : GAATCAAAACTAGTCTTGATACAC : 292578 vulgar: gi|383850686|ref|XP_003700914.1| 336 402 . KQ414889.1 292380 292578 + 100 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292381 292578 100 + . gene_id 35 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292381 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292381 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292381 292578 100 + . alignment_id 35 ; Query gi|383850686|ref|XP_003700914.1| ; Align 292381 337 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1070 Query range: 10 -> 406 Target range: 299656 -> 302166 11 : LeuLysAsnSerTyrTyrSerSerAspIleGlnTyrAlaLeuGlnMetThrGlnTrpT : 30 |||!:!|||! !:!!|||..!!:!||||||!!.|||.!!||||||||| !|||||| LeuArgAsnTyrHisTyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpL 299657 : TTGAGGAATTACCATTACCAAAATGACATACATTACACGCTGCAAATGTGCCAATGGT : 299714 31 : hrLeuLysProIleGlyIleTrpProValIleTyrHisArgValThrArgArgGluGl : 49 !|||||||||||||||:!!|||! !:!!:!! !!!!.||| !!:!!:!! !|||!! euLeuLysProIleGlyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHi 299715 : TGTTGAAACCTATCGGAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACA : 299771 50 : nLeuMetSerValValLeuMetIlePheGlyPheSerAlaLeuCysPheValLeuIle : 68 .|||:!:|||:!!|||||||||! !.!. !!||||||::!|||! !|||:!!:!!:!: sLeuValSerIleValLeuMetThrIleCysPheSerSerLeuPhePheIleValLeu 299772 : CCTCGTCTCGATCGTTCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTG : 299828 69 : ProSerGlyHisTyrIlePhePheThrGlyArg<->IleSerThrLysIleSerLeuP : 87 ||||||||||||||||||||||||.!!! !!:! ||| !..!|||:!:!.!:!!| ProSerGlyHisTyrIlePhePheAlaGluLysSerIleHisValLysValLysValP 299829 : CCATCCGGTCATTACATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTAT : 299888 88 : heGlyProValGlyPheCysLeuSerThrThrValLysTyrValTyrLeuGlyLeuAr : 106 ||||||||||||||||||||||||||:!!! !||||||||| !|||||| !!|||!. heGlyProValGlyPheCysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAs 299889 : TCGGTCCGGTTGGTTTTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAA : 299945 107 : gAlaSerIlePheGlyArgCysIleGluHisValGluArgAspTrpLysAlaValThr : 125 !!.!.!! |||! !|||||||||:!!||||||||||||||| ... ... nGlyGlyAlaPheGluArgCysIleGlnHisValGluArgAsp---UnkUnkUnkUnk 299946 : CGGTGGCGCGTTCGAACGATGCATCCAACACGTCGAGAGAGAC---NNNNNNNNNNNN : 299999 126 : AspGlnArg--HisArgSerIleMetLeuGluCysThrAlaPheSerArgLysLeuIl : 144 |||##||||||!!!|||||||||..!! !..!.!!.!.||||||!!.|||! UnkUnkArg##HisArgThrIleMetLeuArgTyrValThrMetSerArgAsnLeuTh 300000 : NNNNTTCGAATCATCGTACGATCATGTTGAGATACGTGACTATGAGCAGAAATCTGAC : 300058 145 : eThrMetCysAlaAlaPheLeuTyrThrGlyGlyLeuSerHisHisThrLeuPhePro : 163 |||:!!||||||!.!|||||||||.!!||||||:!!|||:!!||||||:!!.!.! ! rThrValCysAlaValPheLeuTyrAlaGlyGlyMetSerTyrHisThrValMetGln 300059 : GACCGTGTGCGCCGTGTTTCTTTACGCAGGTGGTATGTCGTATCACACGGTGATGCAG : 300115 164 : PheLeuSerLysAspLysGln{G} >>>> Target Intron 1 >>>> {ln}A : 172 |||||||||||||||!:!...{:} 45 bp {:!}! PheLeuSerLysAspArgSer{A}+- +-{rg}G 300116 : TTCTTATCGAAGGACAGAAGC{A}gc.........................aa{GG}G : 300187 173 : spAsnLeuThrIleArgProLeuIleTyrProGlyTyrAspValTyrValAspSerGl : 191 !:|||! !||| !!:!|||||| !||||||||||||||| !!:!:!!|||!!!|| luAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGl 300188 : AGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACA : 300244 192 : nAlaSerProAlaTyrGluIleIlePheCysLeuHisLeuValThrAlaLeuValIle : 210 |.!!||||||.!!|||||||||:::||| ...||| !!.!!|||:!!:!!!!: nThrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMet 300245 : AACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATG : 300301 211 : TyrThrIleSerThrGlyAlaTyrSerLeuLeuValIlePheIleMetHisIleSerG : 230 |||!.!:!:!!!|||!.!|||||||||||| !!.!||||||:!!! ||||||!!!| TyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysG 300302 : TACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTG : 300361 231 : lyGlnIleGlnIleGlnIleThrArgLeuGlnAsnLeuLysLysAlaGlnMetGluLy : 249 |||||||||||||||||!!:.!!||||||:!!:!!||| !:!! ! ! ||||| lyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrGlyGluLy 300362 : GACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGGGAGAGAA : 300418 250 : sGlyHis<->ArgAsnProLeuAlaIleIleValTyrAsnHisValGluIleLeu{Ar : 267 |! ! !! ! !:!!||||||!.!:!!|||||| :!!||||||:!!:!!|||{|| sAspAspGlyProAspProLeuValValIleValArgAspHisValLysValLeu{Ar 300419 : GGACGACGGTCCTGATCCTTTGGTCGTTATCGTTCGAGATCACGTGAAGGTTTTA{AG : 300475 268 : } >>>> Target Intron 2 >>>> {g}PheSerGluAsnValGlnAlaAlaL : 276 } 140 bp {|}|||:!!:!!||||||:!!! !.!!| }++ ++{g}PheAlaLysAsnValGluGluThrL 300476 : }gt.........................ag{A}TTTGCAAAGAACGTTGAGGAAACTT : 300642 277 : euGluGluIleCysPheThrGluValValGluCysThrIleAsnMetCysMetLeuGl : 295 ||...!!:.!!|||!!...!|||:!! !!|||! !|||:!:! !:!!|||:!!|||:! euArgAspPheCysLeuValGluIlePheGluSerThrLeuIleLeuCysLeuLeuGl 300643 : TGCGTGACTTCTGCTTAGTGGAAATCTTCGAGTCCACGCTGATTTTGTGTTTGCTCGA : 300699 296 : nTyrTyrCysLeuMet >>>> Target Intron 3 >>>> SerTrpArgSerS : 305 !||||||||||||:!! 970 bp ..!|||!:!!:!| uTyrTyrCysLeuVal++ ++GluTrpGlnAsnS 300700 : ATACTACTGTTTGGTGgt.........................agGAATGGCAAAATA : 301699 306 : erAspGlyValLysIleIleThrTyrPheThrLeuLeuCysSerPheThrSerAsnIl : 324 ||||| !:!! !!::!:|||!:!|||||||||||| |||||||||! !||||| erAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAsnIl 301700 : GCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATAT : 301756 325 : ePheIlePheCysTyrIleGlyGluIleLeuThrGluGln >>>> Target Intr : 338 |||||||||||||||||||||||||||||||:!!|||||| 80 bp ePheIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301757 : ATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt................ : 301800 339 : on 4 >>>> CysSerGlnIleGlyLysAlaSerTyrGluIleAspTrpTyrAsnLe : 353 |||||||||||||||..!||||||||||||||||||||||||||||| ++CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLe 301801 : .........agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTT : 301923 354 : uProAlaLysAsnAlaHisAspLeuIleLeuLeuAsnLeuIleSerGlnAsnProPro : 372 ||||||||||!..|||:!!|||||||||||||||!:!:!!||||||||| !!|||||| uProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProPro 301924 : ACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCG : 301980 373 : LysLeuLeuAlaGlyArgIleIleGluLeuThrLeuAsnThrPheSerAla >>>> : 390 |||||| !||||||!:!||||||!!:|||:!!|||||||||||||||:!! LysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSer++ 301981 : AAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTgt..... : 302036 391 : Target Intron 5 >>>> ValValLysThrSerValAlaTyrMetAsnLeuLeu : 401 82 bp ||||||||||||||||||!.!|||:!!||||||||| ++ValValLysThrSerValValTyrLeuAsnLeuLeu 302037 : ....................agGTGGTGAAAACATCGGTGGTGTACTTGAATTTACTG : 302149 402 : ArgThrValThrAsp : 406 ||||||||||||:!! ArgThrValThrAsn 302150 : CGAACAGTTACAAAC : 302166 vulgar: gi|383850526|ref|XP_003700846.1| 10 406 . KQ414889.1 299656 302166 + 1070 M 69 207 G 0 3 M 41 123 G 1 0 M 7 21 F 0 2 M 42 126 S 0 1 5 0 2 I 0 41 3 0 2 S 1 2 M 80 240 G 0 3 M 15 45 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 33 99 5 0 2 I 0 966 3 0 2 M 37 111 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299657 302166 1070 + . gene_id 1 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 299657 300139 . + . KQ414889.1 exonerate:protein2genome:local exon 299657 300139 . + . insertions 3 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local splice5 300140 300141 . + . intron_id 1 ; splice_site "GC" KQ414889.1 exonerate:protein2genome:local intron 300140 300184 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300183 300184 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 300185 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300185 300476 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 300616 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 300615 300616 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300617 300716 . + . KQ414889.1 exonerate:protein2genome:local exon 300617 300716 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300717 300718 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300717 301686 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 301685 301686 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 5 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 5 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 4 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302166 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302166 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299657 302166 1070 + . alignment_id 1 ; Query gi|383850526|ref|XP_003700846.1| ; Align 299657 11 207 ; Align 299867 80 123 ; Align 299990 122 21 ; Align 300013 129 126 ; Align 300187 172 240 ; Align 300430 252 45 ; Align 300618 268 99 ; Align 301687 301 111 ; Align 301878 338 156 ; Align 302116 390 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 629 Query range: 3 -> 267 Target range: 289681 -> 290482 4 : ArgSerHisAspAsnGlnValLeuLysAsnSerTyrTyrSerSerAspIleGlnTyrA : 23 |||||| !..!!:!.!. !! !..!|||..! !|||..!!!!||||||!::|||. ArgSerPheSerSerAspArgProSerAsnAspArgTyrGluThrAspIleArgTyrT 289682 : CGATCGTTCAGCAGCGATCGTCCGTCGAACGATCGTTACGAAACGGACATACGTTACA : 289739 24 : laLeuGlnMetThrGlnTrpThrLeuLysProIleGlyIleTrpProValIleTyrHi : 42 !!!!!:!!:!: !!!.|||! !|||||||||||||||!!:!::||| !!:!!!:! hrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrProPheValPheSe 289740 : CGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCTTTAG : 289796 43 : sArgValThrArgArgGluGlnLeuMetSerValValLeuMetIlePheGlyPheSer : 61 !|||!.!!:!|||||||||!:! ! !||||||:!!|||!!::!: ! !!! !||| rArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLeuValCysCysSer 289797 : CCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCG : 289853 62 : AlaLeuCysPheValLeuIleProSerGlyHisTyrIlePhePheThrGlyArg<->I : 80 !||| |||:!!:!!:!!|||! !.!!|||:!!:!!.!.|||!:!! !!.! ! IleLeuGlnPheIleIleValProPheSerHisHisValLeuPheSerAspAsnAspM 289854 : ATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAACGACA : 289913 81 : leSerThrLysIleSerLeuPheGlyProValGlyPheCysLeuSerThrThrValLy : 99 !:!:!||| :!!!.! !.!!||||||:!! !|||||||||!!!||| ! !!|| etAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuThrThrPhePheLy 289914 : TGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCTTCAA : 289970 100 : sTyrValTyrLeuGlyLeuArgAlaSerIlePheGlyArgCysIleGluHisValGlu : 118 |||| !|||!!!.!!:!!!:!!.!||| .!!|||||||||:!::!!|||:!!||| sTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysValLysHisIleGlu 289971 : GTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACATCGAG : 290027 119 : ArgAspTrpLysAlaValThrAspGlnArgHisArgSerIleMetLeuGluCysThrA : 138 |||||||||||| !:!! !|||:!! !|||||| !|||||||||..!! !..!. ArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMetLeuArgTyrValT 290028 : AGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATACGTGA : 290087 139 : laPheSerArgLysLeuIleThrMetCysAlaAlaPheLeuTyrThrGlyGlyLeuSe : 157 !!.!.||||||!!.||||||! !:!!|||||| !|||||||||! !||||||||||| hrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyLeuSe 290088 : CGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTCTGTC : 290144 158 : rHisHisThrLeuPheProPheLeuSerLysAspLysGlnGlnAspAsnLeuThrIle : 176 |:!!:!!|||:!!.!.|||!!.!!!|||||| ! !.. !.!.! !|||:!!|||||| rTyrAsnThrValIleProLeuPheSerLysLysSerValAsnGlyAsnValThrIle 290145 : TTATAACACTGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGGTAACGTGACTATC : 290201 177 : ArgProLeuIleTyrProGlyTyrAspValTyrValAspSerGlnAlaSerProAlaT : 196 |||||||||! !||||||||||||!!:! !!:! !!||| !||| !|||||||||| ArgProLeuThrTyrProGlyTyrGluGluPhePheAspValGlnLysSerProAlaT 290202 : AGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGT : 290261 197 : yrGluIleIlePheCysLeuHisLeuValThrAlaLeuValIleTyrThrIleSerTh : 215 ||||||||:!!||||||:!!|||! !||| !!.!:!!:!!! !.!|||!!!! yrGluIleValPheCysMetHisCysValTyrValMetIleThrAlaAsnIleThrMe 290262 : ACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACATCACAAT : 290318 216 : rGlyAlaTyrSerLeuLeuValIlePheIleMetHisIleSerGlyGlnIleGlnIle : 234 !!.!|||||||||||| !..!|||||| !! |||! !!!!|||||||||:!!||| tAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGlnIleLysIle 290319 : GGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATA : 290375 235 : GlnIleThrArgLeuGlnAsnLeuLysLysAlaGlnMet<-><->GluLysGlyHisA : 252 |||! |||||||||:!!:!!|||! !||| ! !||| ||||||||| ! GlnThrThrArgLeuGluAspLeuThrLysArgGlyMetLeuLeuGluLysGlyValS 290376 : CAAACGACGCGGCTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGA : 290435 253 : rgAsnProLeuAlaIleIleValTyrAsnHisValGluIleLeuArg : 267 !!:!!! !||||||:!!:!!||| !..!|||||||||||||||!:! erAspArgLeuAlaValValValSerGlyHisValGluIleLeuLys 290436 : GTGATCGTTTGGCGGTTGTTGTGAGCGGTCACGTGGAGATCTTGAAG : 290482 vulgar: gi|383850526|ref|XP_003700846.1| 3 267 . KQ414889.1 289681 290482 + 629 M 76 228 G 0 3 M 168 504 G 0 6 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289682 290482 629 + . gene_id 2 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289682 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289682 290482 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289682 290482 629 + . alignment_id 2 ; Query gi|383850526|ref|XP_003700846.1| ; Align 289682 4 228 ; Align 289913 80 504 ; Align 290423 248 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 476 Query range: 7 -> 337 Target range: 208170 -> 210774 8 : AsnGlnValLeuLysAsnSerTyrTyrSerSerAspIleGlnTyrAlaLeuGlnMetT : 27 !..|||:!!!!! |||!!! !!|||!.!!:!|||:!:...!:! !:!!!:::!!! ArgGlnIlePheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuA 208171 : AGACAAATATTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGA : 208228 28 : hrGlnTrpThrLeuLysProIleGlyIleTrpProValIleTyrHisArgValThrAr : 46 .! !|||||||||||| !|||||| !|||||| ! ! !!||| :!! ! snValTrpThrLeuLysIleIleGlySerTrpProArgSerIleAspArg---SerTr 208229 : ACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGT---TCCTG : 208282 47 : gArgGluGlnLeuMetSerValValLeuMetIlePheGlyPheSerAlaLeuCysPhe : 65 ! !|||.!. !..! !:!!:!!|||! :!!.!!.!! !!!! !||| !!||| pLeuGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPhe 208283 : GTTAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTC : 208339 66 : ValLeuIleProSerGlyHisTyr<->IlePhePheThrGlyArgIleSerThrLysI : 84 :!!:!!||||||!!!||| !:! |||.!! ! ..!! ! !.!!! ! !:!!: IleValIleProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnL 208340 : ATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAAT : 208399 85 : leSerLeuPheGlyProValGlyPheCysLeuSerThrThrValLysTyrValTyrLe : 103 !!!.!:!!! !.!! !!:!!.!!|||! !:!!! !.!! !..!||||||||| !:! euLysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMe 208400 : TAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCAT : 208456 104 : uGlyLeuArgAlaSerIlePheGlyArgCysIleGluHisValGluArgAspTrpLys : 122 ! !:!!|||! !.!! !.!. !!!:!|||:!!|||:!!|||||| !||||||!:! tThrValArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArg 208457 : GACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGA : 208513 123 : AlaValThrAspGlnArgHisArgSerIleMetLeuGluCysThrAlaPheSerArgL : 142 !||| ! !!:!!..! !!|||!.!|||||||||!!: !.!!::!|||:!!|||| AsnValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgL 208514 : AACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGA : 208573 143 : ysLeuIleThrMetCysAlaAlaPheLeuTyrThrGlyGlyLeuSerHisHisThrLe : 161 ||||||||..!!!:|||!.!||||||:!!||| !||| ::: :::::: ! ysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAl 208574 : AACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGC : 208630 162 : uPheProPheLeuSerLysAsp<-><->LysGlnGlnAspAsnLeuThrIleArgPro : 178 !!!.|||.!! ! !! ! ! :!!:!! ! !||||||||| !||| ! aLeuProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArg 208631 : TTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGG : 208687 179 : LeuIleTyrProGlyTyrAspValTyrValAspSerGlnAlaSerProAlaTyrGluI : 198 |||:!!||||||! ! ! ! !! !:!!||| !!:! !||||||!.! !!|||| LeuValTyrProValProLysPheIleLeuAspValArgTyrSerProValAsnGluI 208688 : CTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGA : 208747 199 : leIlePheCysLeuHisLeuValThrAlaLeuValIleTyrThrIleSerThrGlyAl : 217 ||.!!!:! :!!!!.|||:!!:!!!.!!!!||| !:!!!.!|||!!!..!||||| lePheTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAl 208748 : TTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGC : 208804 218 : aTyrSerLeuLeuValIlePheIleMetHisIleSerGlyGlnIleGlnIleGlnIle : 236 |! !.!!||| !!.!:!:.!! |||||| !!!||||||:!:|||||| !!!: aCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMet 208805 : TTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATG : 208861 237 : ThrArgLeuGlnAsnLeu<-><->LysLysAlaGlnMetGluLysGlyHisArgAsnP : 254 :!! !!:!!:!!!!.||| !::!! !.!. !||||||..! !.!. SerTrpMetGluLysLeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnA 208862 : TCCTGGATGGAGAAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGA : 208921 255 : roLeuAlaIleIleValTyrAsnHisValGluIleLeu{Ar} >>>> Target In : 267 !||||||! !|||||| ! .!.||||||..!:!::!!{!.} 1536 rgLeuAlaAsnIleValGluGlnHisValArgValIle{As}++ 208922 : GGTTGGCTAATATCGTGGAGCAGCATGTTCGAGTGATC{AA}gt.............. : 208964 268 : tron 1 >>>> {g}PheSerGluAsnValGlnAlaAlaLeuGluGluIleCysPhe : 281 bp {!}|||! !! ..!:!! ! !|||.!.||||||! !!. ++{n}PheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeu 208965 : ...........ag{T}TTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTG : 210538 282 : ThrGluValValGluCysThrIleAsnMetCysMetLeuGlnTyrTyrCysLeuMet : 301 ! !|||:!!|||! !||||||:!:|||||||||.!.||| |||||| :!!!!: IleGluMetValGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle+ 210539 : ATAGAAATGGTGGGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTg : 210598 302 : >>>> Target Intron 2 >>>> SerTrpArgSerSerAspGlyValLysIle : 310 66 bp ..!||| !|||!.!||| !:!!!..! ! + ++GluTrpAspSerLysAspProIleSerSer 210599 : t.........................agGAATGGGACTCTAAAGACCCTATCAGCAGT : 210691 311 : IleThrTyrPheThrLeuLeuCysSerPheThrSerAsnIlePheIlePheCysTyrI : 330 :!:||||||.!...!|||||| !||| !!|||! !|||||||||||||||||||||| LeuThrTyrIleValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrI 210692 : CTGACGTACATAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACA : 210751 331 : leGlyGluIleLeuThrGluGln : 337 ||||||||:!:|||.!!|||||| leGlyGluValLeuAlaGluGln 210752 : TCGGTGAAGTGTTGGCTGAACAg : 210774 vulgar: gi|383850526|ref|XP_003700846.1| 7 337 . KQ414889.1 208170 210774 + 476 M 36 108 G 1 0 M 29 87 G 0 3 M 95 285 G 0 6 M 74 222 G 0 6 M 24 72 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208171 210774 476 + . gene_id 3 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208171 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208171 208961 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208171 210774 476 + . alignment_id 3 ; Query gi|383850526|ref|XP_003700846.1| ; Align 208171 8 108 ; Align 208279 45 87 ; Align 208369 74 285 ; Align 208660 169 222 ; Align 208888 243 72 ; Align 210499 268 99 ; Align 210664 301 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 352 Query range: 12 -> 242 Target range: 284496 -> 285201 13 : AsnSerTyrTyrSerSerAspIleGlnTyrAlaLeuGlnMetThrGlnTrpThrLeuL : 32 :!!||| !::..!!!!||| ..!|||::!:!!||||||!.!!::||| !|||| AspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuL 284497 : GATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCA : 284554 33 : ysProIleGlyIleTrpProValIleTyrHisArgValThrArgArgGluGlnLeuMe : 51 |||||||||||:!!||||||:!!! ! ! !!||||||! ! !|||:!!:!!! ysProIleGlyValTrpProLeuSerLeu---CysValThrThrLeuGluLysIleSe 284555 : AACCGATTGGCGTATGGCCTCTCAGTCTC---TGCGTGACCACCTTGGAAAAGATCAG : 284608 52 : tSerValValLeuMetIlePheGlyPheSerAlaLeuCysPheValLeuIleProSer : 70 |||||||||||| !:!!.!!.!!! !! ! !:!! !!|||:!!|||:!!|||!!! rSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCys 284609 : TTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGC : 284665 71 : Gly<-><->HisTyrIlePhePheThrGlyArgIleSerThrLysIleSerLeuPheG : 88 !.! :!! ! |||||| !:!!..!|||||||||!.!:!!.!!| AlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleG 284666 : GCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCG : 284725 89 : lyProValGlyPheCysLeuSerThrThrValLysTyrValTyrLeuGlyLeuArgAl : 107 |||||:!!.!!||||||:!!! !.!!.!!:!!|||||| ! !||| !! !|||!. lyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGl 284726 : GTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGG : 284782 108 : aSerIlePheGlyArgCysIleGluHisValGluArgAspTrpLysAlaVal<-><-> : 125 !.!!! .!!|||!:!|||:!::!! !!:!!... !||||||... !..! yGlyLysIleGlyGlnCysValLysAspIleArgAlaAspTrpSerLeuThrLeuSer 284783 : CGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCG : 284839 126 : <->ThrAspGlnArgHisArgSerIleMetLeuGluCysThrAlaPheSerArgLysL : 143 !::...:::......|||...|||||| !!!: !!.!! !.!!.!!|||...| HisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerL 284840 : CATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTT : 284899 144 : euIleThrMetCysAlaAlaPheLeuTyrThrGlyGlyLeuSerHisHisThrLeuPh : 162 || ! !.!.||||||!.!|||:!!|||:!!||||||!!!! !:!! !|||:!!.! euAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMe 284900 : TGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGAT : 284956 163 : eProPheLeuSer<->LysAspLysGlnGlnAspAsnLeuThrIleArgProLeuIle : 180 .|||!!.! !!!! ::: :!! |||||| !|||:!:||| !!! ! tProLeuCysThrValArgThrGluIleIleAspAsnGluThrValArgSerGlnAla 284957 : GCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCG : 285013 181 : TyrProGlyTyrAspValTyrValAspSerGlnAlaSerProAlaTyrGluIleIleP : 200 !:!||| !||| !! ! !:!!||| !!!::.!!||||||:!!!:!||||||:!: PheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValG 285014 : TTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGC : 285073 201 : heCysLeuHisLeuValThrAlaLeuValIleTyrThrIleSerThrGlyAlaTyrSe : 219 ! !:!!!!.! !:!!.!!|||!!!|||||||||:!!:!!!!!..!||||||! !|| lnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSe 285074 : AATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAG : 285130 220 : rLeuLeuValIlePheIleMetHisIleSerGlyGlnIleGlnIleGlnIleThrArg : 238 |||| !!.!:!:|||:!!||||||:!!!!!||||||.!!::!|||! :!:|||!:! rLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLys 285131 : CTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAG : 285187 239 : LeuGlnAsnLeu : 242 |||.!.!!.||| LeuAspLysLeu 285188 : CTGGATAAGCTC : 285201 vulgar: gi|383850526|ref|XP_003700846.1| 12 242 . KQ414889.1 284496 285201 + 352 M 29 87 G 1 0 M 29 87 G 0 6 M 53 159 G 0 9 M 42 126 G 0 3 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284497 285201 352 + . gene_id 4 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284497 285201 . + . KQ414889.1 exonerate:protein2genome:local exon 284497 285201 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284497 285201 352 + . alignment_id 4 ; Query gi|383850526|ref|XP_003700846.1| ; Align 284497 13 87 ; Align 284584 43 87 ; Align 284677 72 159 ; Align 284845 125 126 ; Align 284974 167 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 346 Query range: 12 -> 242 Target range: 278549 -> 279254 13 : AsnSerTyrTyrSerSerAspIleGlnTyrAlaLeuGlnMetThrGlnTrpThrLeuL : 32 :!!||| !::!:!!!!||| ..!|||::!:!!||||||!.!!::||| !|||| AspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuL 278550 : GATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCA : 278607 33 : ysProIleGlyIleTrpProValIleTyrHisArgValThrArgArgGluGlnLeuMe : 51 |||||||||||:!!||||||:!!! ! ! !!||||||! ! !|||:!!:!!! ysProIleGlyValTrpProLeuSerLeu---CysValThrThrLeuGluLysIleSe 278608 : AACCGATTGGCGTATGGCCTCTCAGTCTC---TGCGTGACCACCTTGGAAAAGATCAG : 278661 52 : tSerValValLeuMetIlePheGlyPheSerAlaLeuCysPheValLeuIleProSer : 70 |||||||||||| !:!!.!!.!!! !! ! !:!! !!|||:!!|||:!!|||!!! rSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCys 278662 : TTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGC : 278718 71 : Gly<-><->HisTyrIlePhePheThrGlyArgIleSerThrLysIleSerLeuPheG : 88 !.! :!! ! |||||| !:!!..!|||||||||!.!:!!.!!| AlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleG 278719 : GCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCG : 278778 89 : lyProValGlyPheCysLeuSerThrThrValLysTyrValTyrLeuGlyLeuArgAl : 107 |||||:!!.!!|||||| !! !.!!|||:!!|||||| ! !||| !! !|||!. lyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGl 278779 : GTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGG : 278835 108 : aSerIlePheGlyArgCysIleGluHisValGluArgAspTrpLysAlaValThrAsp : 126 !.!!! .!!|||!:!|||:!:.!. !!:!!...! !||||||... !..! !... yGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSer 278836 : CGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCG : 278892 127 : GlnArg<-><-><->HisArgSerIleMetLeuGluCysThrAlaPheSerArgLysL : 143 ! ||| ...|||...|||||| !!!: !!.!! !.!!.!!|||...| TyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerL 278893 : TATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTT : 278952 144 : euIleThrMetCysAlaAlaPheLeuTyrThrGlyGlyLeuSerHisHisThrLeuPh : 162 || ! !.!. !!|||!.!|||:!!|||:!!||||||:!!! !:!! !.!!:!!.! euAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMe 278953 : TGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGAT : 279009 163 : ePro<->PheLeuSerLysAspLysGlnGlnAspAsnLeuThrIleArgProLeuIle : 180 .||| ||| ! !::: :!! |||||| !|||:!:||| !!! ! tProLeuPheAlaValArgThrGluIleIleAspAsnGluThrValArgSerGlnAla 279010 : GCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCG : 279066 181 : TyrProGlyTyrAspValTyrValAspSerGlnAlaSerProAlaTyrGluIleIleP : 200 !:!||| !||| !! ! !:!!||| !!!::.!!||||||:!!!:!||||||:!: PheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValG 279067 : TTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGC : 279126 201 : heCysLeuHisLeuValThrAlaLeuValIleTyrThrIleSerThrGlyAlaTyrSe : 219 ! !:!!!!.! !:!!.!!|||!!!|||:!!|||:!!:!!!!!..!||||||! !|| lnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSe 279127 : AATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAG : 279183 220 : rLeuLeuValIlePheIleMetHisIleSerGlyGlnIleGlnIleGlnIleThrArg : 238 ||||:!!!.!:!:|||:!!||||||:!!!!!||||||.!!::!|||! :!:|||!:! rLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLys 279184 : CTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAG : 279240 239 : LeuGlnAsnLeu : 242 |||.!.!!.||| LeuAspLysLeu 279241 : CTGGATAAGCTC : 279254 vulgar: gi|383850526|ref|XP_003700846.1| 12 242 . KQ414889.1 278549 279254 + 346 M 29 87 G 1 0 M 29 87 G 0 6 M 57 171 G 0 9 M 35 105 G 0 3 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278550 279254 346 + . gene_id 5 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278550 279254 . + . KQ414889.1 exonerate:protein2genome:local exon 278550 279254 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278550 279254 346 + . alignment_id 5 ; Query gi|383850526|ref|XP_003700846.1| ; Align 278550 13 87 ; Align 278637 43 87 ; Align 278730 72 171 ; Align 278910 129 105 ; Align 279018 164 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 344 Query range: 15 -> 268 Target range: 221360 -> 222131 16 : TyrSerSerAspIleGlnTyrAlaLeuGlnMetThrGlnTrpThrLeuLysProIleG : 35 |||!.!!!!:!!:!::!!! ::!:!!|||:!!!:!!::|||! !||||||||||||| TyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleG 221361 : TACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCG : 221418 36 : lyIleTrpProValIleTyrHisArgValThrArgArgGluGlnLeuMetSerValVa : 54 ||:!!|||||| ! ! !:!! :!!:!!! ! !|||::!! !:!:! ! !:! lyValTrpProAsnSerAlaAsn---IleSerThrValGluArgTyrLeuTyrTrpLe 221419 : GTGTTTGGCCAAATTCAGCCAAC---ATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 55 : lLeuMetIlePheGlyPheSerAlaLeuCysPheValLeuIleProSerGlyHisTyr : 73 !:!!! :!! !! !!!:!||| !:!! |||:!!|||:!!|||!!!.!!! !||| uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 74 : IlePhePhe<->ThrGlyArgIleSerThrLysIleSerLeuPheGlyProValGlyP : 92 :!:.!!.!! ..!! ! !:!!! !!.!!:!|||!.!|||!!.||||||:!!.!!| ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 93 : heCysLeuSerThrThrValLysTyrValTyrLeuGlyLeuArgAlaSerIlePheGl : 111 |||||:!!! !.!! !:!!|||||| ! ||| !||| !! !!:! !.!! ! heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 112 : yArgCysIleGluHisValGluArgAspTrpLysAlaValThrAspGlnArgHisArg : 130 !..!|||||||||!.!:!!||| !!||||||||| !:!!||| !!...!:! !!!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 131 : SerIleMetLeuGluCysThrAlaPheSerArgLysLeuIleThrMetCysAlaAlaP : 150 ..!||||||:!!||| !.!! !|||.!!|||::!||||||! !!!:|||.!! !| AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 151 : heLeuTyrThrGlyGlyLeuSerHisHisThrLeuPheProPhe<->LeuSerLysAs : 168 ||:!!|||!:!||| ::: :::::: ! !.!.|||||| :!!.!!||| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 169 : pLysGlnGlnAsp<->AsnLeuThrIleArgProLeuIleTyrProGlyTyrAspVal : 186 ! !|||||| |||:::|||... |||:!!:!:!:!||| !! !! eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 187 : TyrValAspSerGlnAlaSerProAlaTyrGluIleIlePheCysLeuHisLeuValT : 206 !||||||!!!!:! !||||||!.! !!||||||:!:|||! |||!!.:!!:!!. IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 207 : hrAlaLeuValIleTyrThrIleSerThrGlyAlaTyrSerLeuLeuValIlePheIl : 225 !!!.! !:!!!!::!!!:!|||!!!:!!!.!|||! !||||||:!!!.!!!:||| laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 226 : eMetHisIleSerGlyGlnIleGlnIleGlnIleThrArgLeuGlnAsnLeu<-><-> : 243 !:!!||| !!!!||||||!!:|||:!: !!!:!:! !!|||:!!:!!||| aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 244 : LysLysAlaGlnMetGluLysGlyHisArgAsnProLeuAlaIleIleValTyrAsnH : 262 ::!|||.!.||| !!...! !!.. !:!!|||! |||||| !!.!.| GlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnH 222052 : GGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAAC : 222111 263 : isValGluIleLeuArgPhe : 268 |||||..!||||||!:!!:! isValArgIleLeuGlnTyr 222112 : ACGTTCGAATATTGCAGTAT : 222131 vulgar: gi|383850526|ref|XP_003700846.1| 15 268 . KQ414889.1 221360 222131 + 344 M 27 81 G 1 0 M 33 99 G 0 3 M 88 264 G 0 3 M 8 24 G 0 3 M 70 210 G 0 6 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221361 222131 344 + . gene_id 6 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221361 222131 . + . KQ414889.1 exonerate:protein2genome:local exon 221361 222131 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221361 222131 344 + . alignment_id 6 ; Query gi|383850526|ref|XP_003700846.1| ; Align 221361 16 81 ; Align 221442 44 99 ; Align 221544 77 264 ; Align 221811 165 24 ; Align 221838 173 210 ; Align 222054 243 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 320 Query range: 15 -> 267 Target range: 217156 -> 217924 16 : TyrSerSerAspIleGlnTyrAlaLeuGlnMetThrGlnTrpThrLeuLysProIleG : 35 |||......:::|||... ::!:!!||| !!.!!::||| !|||||||||!!:| TyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetG 217157 : tacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGG : 217214 36 : lyIleTrpProValIleTyrHisArgValThrArgArgGluGlnLeuMetSerValVa : 54 ||:!!|||||| ! !! !.!! !..!|||||| !..!:!!:!!:!:! ! !:! lyLeuTrpPro---AsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLe 217215 : GTCTTTGGCCA---AACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACT : 217268 55 : lLeuMetIlePheGlyPheSerAlaLeuCysPheValLeuIleProSerGlyHisTyr : 73 !:!!! !!!. !!!:!.!! !:!! !!|||:!!!!!:!!|||!!!..! ||| uIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyr 217269 : GATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTAC : 217325 74 : IlePhePhe<->ThrGlyArgIleSerThrLysIleSerLeuPheGlyProValGlyP : 92 :!:|||.!! ..!! ! !:!!! ! !|||:!:!.!||||||||||||:!! !| ValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIleP 217326 : GTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCT : 217385 93 : heCysLeuSerThrThrValLysTyrValTyrLeuGlyLeuArgAlaSerIlePheGl : 111 |||||:!!! !.!! !||||||||| !! !||| !:!!!.! !:!! !.!! ! heCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleAr 217386 : TCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCG : 217442 112 : yArgCysIleGluHisValGluArgAspTrpLysAlaValThrAspGlnArgHisArg : 130 !..!|||:!:..!...:!!||||||||||||!:! !|||! ! !:!!!:! !!||| gGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArg 217443 : CGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGG : 217499 131 : SerIleMetLeuGluCysThrAlaPheSerArgLysLeuIleThrMetCysAlaAlaP : 150 ..! |||:!!! ! !.!! !|||.!!|||||||||:!! !:!:|||.!! !| GluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPheP 217500 : GAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCT : 217559 151 : heLeuTyrThrGlyGlyLeuSerHisHisThrLeuPheProPheLeuSerLysAsp<- : 169 ||:!!|||!:!||| ::: :::::: ! !.!.|||.!! ! ! ! heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIl 217560 : TCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAAT : 217616 170 : ><->LysGlnGlnAspAsnLeuThrIleArgProLeuIleTyrProGlyTyrAspVal : 186 ..!:!!.!.! |||||||||.!!! !||||||:!:!:!||| ! ! ! eLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyr 217617 : TCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTAT : 217673 187 : TyrValAspSerGlnAlaSerProAlaTyrGluIleIlePheCysLeuHisLeuValT : 206 !:!!|||!!!!:: !!!!|||.!! !!||||||:!:|||! !|||!!.|||:!!. IleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleA 217674 : ATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCG : 217733 207 : hrAlaLeuValIleTyrThrIleSerThrGlyAlaTyrSerLeuLeuValIlePheIl : 225 !!!.! !:!!!!::!! !|||!!!:!!!.!|||! !|||||| !!.! !||| laGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAl 217734 : CTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGC : 217790 226 : eMetHisIleSerGlyGlnIleGlnIleGlnIleThrArgLeuGlnAsnLeu<-><-> : 243 :!:||| !!!!|||||||||:!!:!: !!!:!.! !!||||||:!!||| aValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAsp 217791 : GGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGAC : 217847 244 : LysLysAlaGlnMetGluLysGlyHisArgAsnProLeuAlaIleIleValTyrAsnH : 262 !:!|||.!.|||... ! ! !..! !:!!|||! !|||||| !.!.| GlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnH 217848 : GGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAAC : 217907 263 : isValGluIleLeuArg : 267 |||||..!||||||!:! isValArgIleLeuLys 217908 : ACGTTCGGATATTAAAG : 217924 vulgar: gi|383850526|ref|XP_003700846.1| 15 267 . KQ414889.1 217156 217924 + 320 M 23 69 G 1 0 M 37 111 G 0 3 M 92 276 G 0 6 M 74 222 G 0 6 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217157 217924 320 + . gene_id 7 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217157 217924 . + . KQ414889.1 exonerate:protein2genome:local exon 217157 217924 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217157 217924 320 + . alignment_id 7 ; Query gi|383850526|ref|XP_003700846.1| ; Align 217157 16 69 ; Align 217226 40 111 ; Align 217340 77 276 ; Align 217622 169 222 ; Align 217850 243 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 320 Query range: 17 -> 199 Target range: 294675 -> 295227 18 : SerAspIleGlnTyrAlaLeuGlnMetThrGlnTrpThrLeuLysProIleGlyIleT : 37 !:!|||:!: ! !!::!|||:!! !!:! !! !|||||||||||||||:!!| AsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuT 294676 : AACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTT : 294733 38 : rpProValIleTyrHisArgValThrArgArgGluGlnLeuMetSerValValLeuMe : 56 |||||:!!|||||| !!.!..!!:!!:!! !.!.:!!:!!:!:|||:!!:!!|||!! rpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIl 294734 : GGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGAT : 294790 57 : tIlePheGlyPheSerAlaLeuCysPheValLeuIleProSerGlyHisTyr<->Ile : 74 : !:: !! ! !.!!:!! |||||||||:!:|||!!!|||:!!!:! :!! eAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCysVal 294791 : CGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTA : 294847 75 : PhePheThrGlyArgIleSerThrLysIleSerLeuPheGlyProValGlyPheCysL : 94 ||| !... ...:::... |||!!:!.!|||.!.||||||||| !!:!! !: PheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerM 294848 : TTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTA : 294907 95 : euSerThrThrValLysTyrValTyrLeuGlyLeuArgAlaSerIlePheGlyArgCy : 113 !! !:!!! !:!!!:!||| !! !|||! !|||!:!.!! !! ||| !!.!|| etLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCy 294908 : TGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTG : 294964 114 : sIleGluHisValGluArgAspTrpLysAlaValThrAspGlnArgHisArgSerIle : 132 ||||||| !!:!!|||!.!||||||||| !:!! !:!!! !..!||||||:!!||| sIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIle 294965 : CATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATC : 295021 133 : MetLeuGluCysThrAlaPheSerArgLysLeuIleThrMetCysAlaAlaPheLeuT : 152 |||:!!:!! !.!! ! !!!!!!:!!:!:!!! !..! ! !.!! !.!.:!!| MetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleIleT 295022 : ATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCT : 295081 153 : yrThrGlyGlyLeuSerHisHisThrLeuPheProPheLeuSerLysAsp<->LysGl : 170 ||!:!..!!.!:!!|||:!!|||.!!:!! ||||||...|||... :!!.! yrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGluAs 295082 : ACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGAGAA : 295138 171 : nGlnAspAsnLeuThrIleArgProLeuIleTyrProGlyTyrAspValTyrValAsp : 189 .:!! ! ||| !||||||||| !!||| ! !|||||||||!!::!!!:!|||||| nLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheValAsp 295139 : CAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGAC : 295195 190 : SerGlnAlaSerProAlaTyrGluIleIle : 199 :!! ! :!!||||||.!!|||||||||||| AlaTyrSerSerProThrTyrGluIleIle 295196 : GCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: gi|383850526|ref|XP_003700846.1| 17 199 . KQ414889.1 294675 295227 + 320 M 56 168 G 0 3 M 95 285 G 0 3 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294676 295227 320 + . gene_id 8 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294676 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294676 295227 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294676 295227 320 + . alignment_id 8 ; Query gi|383850526|ref|XP_003700846.1| ; Align 294676 18 168 ; Align 294847 74 285 ; Align 295135 169 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 299 Query range: 15 -> 341 Target range: 256634 -> 258387 16 : TyrSerSerAspIleGlnTyrAlaLeuGlnMetThrGlnTrpThrLeuLysProIleG : 35 !:!!.!||| !!! !.!.|||::!||||||:!!!.!!:!||| !||||||||||||| PheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleG 256635 : TTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAG : 256692 36 : lyIleTrpProValIleTyrHisArgValThrArgArgGluGlnLeuMetSerValVa : 54 || !|||||| ! ! !..!|||! !! !|||!:! !:!:|||:!!|| lyAlaTrpProPro---SerSerSerThrThrThrLeuGluArgAsnValSerIleVa 256693 : GCGCATGGCCACCC---TCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGT : 256746 55 : lLeuMetIlePheGlyPheSerAlaLeuCysPheValLeuIleProSerGlyHisTyr : 73 ||||! ||| !! !!!:!.!!:!!:!!! |||..!|||||||||!!! !! !:!! lLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIleProCysLeuLeuHis 256747 : TTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCAT : 256803 74 : IlePhePhe<->ThrGlyArgIleSerThrLysIleSerLeuPheGlyProValGlyP : 92 :!!|||.!! !! !!!!.!!! |||:::... |||||||||:!!.!! ValPheLeuAspAspAspSerPheTyrMetLysValLysAsnPheGlyProMetSerH 256804 : GTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCC : 256863 93 : heCysLeuSerThrThrValLysTyrValTyrLeuGlyLeuArgAlaSerIlePheGl : 111 !!! :!!! !!:! !!.!!!.|||..!! ||| !|||!:!!.!!.! !.!. ! isTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleAr 256864 : ATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACG : 256920 112 : yArgCysIleGluHisValGluArgAspTrpLysAlaValThrAspGlnArgHisArg : 130 ! !|||:!!||||||:!!|||! !||||||!:! !|||! ! :!!!:! !!!:! gTyrCysValGluHisIleGluThrAspTrpArgMetValArgArgGluLysAspGln 256921 : CTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAA : 256977 131 : SerIleMetLeuGluCysThrAlaPheSerArgLysLeuIleThrMetCysAlaAlaP : 150 ..!:!:|||:!!:!! !.!! !|||.!!||| ! :!! !|||.!.|||||||||. GlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaI 256978 : CAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTA : 257037 151 : heLeuTyrThrGlyGlyLeuSerHisHisThrLeuPheProPheLeuSerLysAspLy : 169 !!:!! ! !:!||| ... ..!! !! !!.!. !!!!:!! ! leMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAsnThrGluIleIl 257038 : TCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAAT : 257094 170 : sGlnGlnAspAsnLeuThr<-><->IleArgProLeuIleTyrProGlyTyrAspVal : 186 !!. !! ||| !||| :!:||| !||| ! ! !!! !||| ! ! eHisValGlyAsnGluThrThrIleValArgValLeuProValThrValTyrLysLys 257095 : TCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAG : 257151 187 : TyrValAspSerGlnAlaSerProAlaTyrGluIleIlePheCysLeuHisLeuValT : 206 :!!:!! !.!. !||||||.!! !!||||||:!: !!! !:!!!!. ! !: LeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheMetGlnThrTrpS 257152 : CTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGT : 257211 207 : hrAlaLeuValIleTyrThrIleSerThrGlyAlaTyrSerLeuLeuValIlePheIl : 225 !!:!!:!!:!! !|||! !!!!..!.!! !!:!|||||| !!.!:!!||| erSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAlaAlaValPheAl 257212 : CGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGC : 257268 226 : eMetHisIleSerGlyGlnIleGlnIleGlnIleThrArgLeuGlnAsnLeuLysLys : 244 !! ||| ! !||||||:!: :!:! !!::!! !!:!! !.!.!!! !!!. aThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGluPheValAsn 257269 : CACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAAT : 257325 245 : AlaGlnMetGluLysGlyHisArgAsnProLeuAlaIleIleValTyrAsnHisValG : 264 ! !..!! !.!.::: |||..! ! !|||! ! ! ! ! !. GluSerArgAsnArgGluLysThrPheProPheLysGlnIleGlyValIleValGluH 257326 : GAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGC : 257385 265 : luIleLeuArgPheSerGluAsnValGlnAlaAlaLeuGluGluIleCysPheThrGl : 283 !. !|||||| ! !..! ! ! ! ..! !:!!...! :!:!! ! !|| isHisLeuArgValLeuArg***AspPheCysIleIleSerValValTrpAsnPheGl 257386 : ATCATTTAAGAGTGCTGAGGTAAGATTTTTGCATTATTTCCGTTGTGTGGAATTTCGA : 257442 284 : uValValGluCysThrIleAsnMetCysMetLeuGlnTyrTyrCysLeuMet >>>> : 301 | !|||... ! !||| ! !||| ||||||!:!:!! !:!! uArgValSerValIleIlePheAlaCys***LeuGlnPheHisIleIleTyr-- 257443 : AAGGGTTTCTGTGATTATTTTTGCGTGTTAATTGCAGTTTCATATCATATATcg.... : 257498 302 : Target Intron 1 >>>> SerTrpArgSerSerAspGlyValLysIleIleTh : 312 769 bp ..!||| !!!!...||| ...::: :: ++GluTrpSerThrGlnAspIleGlnAsnLeuSerSe 257499 : .....................aggaATGGTCTACGCaagatattcaaaatttgagttc : 258298 313 : rTyrPheThrLeuLeuCysSerPheThrSerAsnIlePheIlePheCysTyrIleGly : 331 :||||||! !:!!||| |||...::: |||||||||:::...|||||||||||| rTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGly 258299 : gtaCTTTATGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGT : 258355 332 : GluIleLeuThrGluGlnCysSerGlnIle : 341 |||||||||||||||||| ! :::||| GluIleLeuThrGluGlnValProGluIle 258356 : GAAATATTAACAGAACAGGTACCagagatt : 258387 vulgar: gi|383850526|ref|XP_003700846.1| 15 341 . KQ414889.1 256634 258387 + 299 M 24 72 G 1 0 M 36 108 G 0 3 M 99 297 G 0 6 M 125 375 5 0 2 I 0 765 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256635 258387 299 + . gene_id 9 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256635 257495 . + . KQ414889.1 exonerate:protein2genome:local exon 256635 257495 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 257496 257497 . + . intron_id 1 ; splice_site "CG" KQ414889.1 exonerate:protein2genome:local intron 257496 258264 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258387 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258387 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256635 258387 299 + . alignment_id 9 ; Query gi|383850526|ref|XP_003700846.1| ; Align 256635 16 72 ; Align 256707 41 108 ; Align 256818 77 297 ; Align 257121 176 375 ; Align 258265 301 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 289 Query range: 120 -> 299 Target range: 304425 -> 305035 121 : TrpLysAlaValThrAspGlnArgHisArgSerIleMetLeuGluCysThrAlaPheS : 140 !:::!! !||| !..!! ||| !!|||..!!!:||||||:!!! ! ! !.!.. TyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetG 304426 : TATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGG : 304483 141 : erArgLysLeuIleThrMetCysAlaAlaPheLeuTyrThrGlyGlyLeuSerHisHi : 159 !!|||!!.|||! ! !!!:|||||| !|||:!!|||||||||||| !! !:!!|| lyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHi 304484 : GTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCA : 304540 160 : sThrLeuPheProPheLeuSerLysAspLysGlnGlnAsp<->AsnLeuThrIleArg : 177 ||||:!!.!.! !||| !!!! ! ! !.!.!!: |||! !||||||!:! sThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgThrIleLys 304541 : CACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAA : 304597 178 : ProLeuIleTyrProGlyTyrAspValTyrValAspSerGlnAlaSerProAlaTyrG : 197 ||||||:!!|||||| !|||..!!.!! !!||| !|||.!!|||||| !|||| ProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIleTyrG 304598 : CCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACG : 304657 198 : luIleIlePheCysLeuHisLeuValThrAlaLeuValIleTyrThrIleSerThrGl : 216 ||:!::!!!:!! !:!!|||! !:!! !!.!! !|||||||||:!!|||!!!.!!|| luLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThrAlaGl 304658 : AATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGG : 304714 217 : yAlaTyrSerLeuLeuValIlePheIleMetHisIleSerGlyGlnIleGlnIleGln : 235 ||||! !.!!||| !!.!:!!||| !! ||| !!!!|||||||||.!.||| yAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleVal 304715 : TGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTT : 304771 236 : IleThrArgLeuGlnAsnLeuLysLysAlaGlnMetGluLysGlyHisArgAsnProL : 255 !!::!!|||||| :!!||| !!.::!:!! ..!...! ! !!!.! !| MetSerArgLeuGlyAspLeuValAsnSerLysGluSerSerAspLeuAspLysArgL 304772 : ATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCATCTGATTTAGATAAACGAT : 304831 256 : euAlaIleIleValTyrAsnHisVal >>>> Target Intron 1 >>>> Glu : 264 || ! !|||||| ! :!!|||:!! 70 bp ! euIleGluIleValGluHisHisLeu-- +-*** 304832 : TAATAGAAATTGTTGAGCATCATTTGcg.........................acTGA : 304928 265 : IleLeuArgPheSerGluAsnValGlnAlaAlaLeuGluGluIleCysPheThrGluV : 284 |||! !|||||||||! !! ||||||.!!!.!|||:!!|||:!!|||||| !||| IleTyrArgPheSerAlaIleValGlnThrValLeuGlnGluValCysPheLeuGluP 304929 : ATTTATAGATTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTTCTTGGAAT : 304988 285 : alValGluCysThrIleAsnMetCysMetLeuGlnTyrTyrCysLeu : 299 !!:!!! ! !|||:!! !!:|||:!:|||:!!|||||||||:!! heIleGlySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysIle 304989 : TCATTGGTTCTACCTTACTGATATGTCTACTTGAATACTACTGTATA : 305035 vulgar: gi|383850526|ref|XP_003700846.1| 120 299 . KQ414889.1 304425 305035 + 289 M 52 156 G 0 3 M 91 273 5 0 2 I 0 66 3 0 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304426 305035 289 + . gene_id 10 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 304426 304857 . + . KQ414889.1 exonerate:protein2genome:local exon 304426 304857 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 304858 304859 . + . intron_id 1 ; splice_site "CG" KQ414889.1 exonerate:protein2genome:local intron 304858 304927 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304926 304927 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 304928 305035 . + . KQ414889.1 exonerate:protein2genome:local exon 304928 305035 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304426 305035 289 + . alignment_id 10 ; Query gi|383850526|ref|XP_003700846.1| ; Align 304426 121 156 ; Align 304585 173 273 ; Align 304928 264 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 278 Query range: 300 -> 406 Target range: 291368 -> 293251 301 : SerTrpArgSerSerAspGlyValLysIleIleThrTyrPheThrLeuLeuCysSerP : 320 ..!|||..!|||||||||..!:!! !|||:!!|||||| !!||||||||| !|||| GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 321 : heThrSerAsnIlePheIlePheCysTyrIleGlyGluIleLeuThr<->Glu >>> : 337 |||||! !||||||.!.||||||||||||:!!||||||:!!||| ! :!! heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln++ 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAGgt... : 291482 338 : > Target Intron 1 >>>> GlnCysSerGlnIleGlyLysAlaSerTyrGluI : 348 910 bp ||| !!|||:!!|||!.! ! |||||||||!!:! +-GlnGlySerGluIleAlaHisAlaSerTyrAspT 291483 : ......................acCAGGGTAGTGAAATCGCGCACGCTTCCTACGATA : 292423 349 : leAspTrpTyrAsnLeuProAlaLysAsnAlaHisAspLeuIleLeuLeuAsnLeuIl : 367 !!!:||||||||||||||| !::!!!.|||!.!|||:!!:!!|||:!! ! !|| hrGluTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIl 292424 : CAGAATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCAT : 292480 368 : eSerGlnAsnProProLysLeuLeuAlaGlyArgIleIleGluLeuThrLeuAsnThr : 386 |!!!:!!:!!||| !|||||| !||||||!:!|||.!!! |||:!!||||||||| eThrLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThr 292481 : AACGAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACT : 292537 387 : PheSerAla >>>> Target Intron 2 >>>> ValValLysThrSerValAl : 396 |||.!!||| 652 bp |||:!!|||:!!||||||!. PheGlyAla++ ++ValLeuLysSerSerValVa 292538 : TTTGGCGCTgt.........................agGTGCTGAAATCGTCGGTAGT : 293219 397 : aTyrMetAsnLeuLeuArgThrValThrAsp : 406 !|||||||||:!!|||||||||||||||!!: lTyrMetAsnMetLeuArgThrValThrGlu 293220 : TTACATGAACATGCTACGAACCGTCACTGAA : 293251 vulgar: gi|383850526|ref|XP_003700846.1| 300 406 . KQ414889.1 291368 293251 + 278 M 35 105 G 0 3 M 1 3 5 0 2 I 0 906 3 0 2 M 53 159 5 0 2 I 0 648 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 293251 278 + . gene_id 11 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292389 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 292388 292389 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 292390 292548 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292548 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 292549 292550 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 292549 293200 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 293199 293200 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 293201 293251 . + . KQ414889.1 exonerate:protein2genome:local exon 293201 293251 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 293251 278 + . alignment_id 11 ; Query gi|383850526|ref|XP_003700846.1| ; Align 291369 301 105 ; Align 291477 336 3 ; Align 292390 337 159 ; Align 293201 390 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 243 Query range: 15 -> 267 Target range: 226912 -> 227680 16 : TyrSerSerAspIleGlnTyrAlaLeuGlnMetThrGlnTrpThrLeuLysProIleG : 35 |||..!..! !!:!:.!. ::!:!!|||:!!!.!!::||| !|||||||||:!!| TyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuG 226913 : TATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCG : 226970 36 : lyIleTrpProValIleTyrHisArgValThrArgArgGluGlnLeuMetSerValVa : 54 ||||||||||| ! !.!!:! !:!!|||! !! !::!! !.!.||| !:! lyIleTrpPro---SerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLe 226971 : GTATCTGGCCG---TCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTT : 227024 55 : lLeuMetIlePheGlyPheSerAlaLeuCysPheValLeuIleProSerGlyHisTyr : 73 !:!! .!!.!! !!!:!:!! !:!! !!|||! !|||:!! !!|||||| ||| uMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyr 227025 : GATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTAC : 227081 74 : IlePhePheThrGlyArg<->IleSerThrLysIleSerLeuPheGlyProValGlyP : 92 :!: !!.!. !! !!:! !! !!.!! !:!:!.!:!!.!!||||||:!!..!| ValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerP 227082 : GTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCT : 227141 93 : heCysLeuSerThrThrValLysTyrValTyrLeuGlyLeuArgAlaSerIlePheGl : 111 ||! ! !! !:!! !:!!|||||| ! ||| !!!!!.!! !..! !.!! hePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLe 227142 : TCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCT : 227198 112 : yArgCysIleGluHisValGluArgAspTrpLysAlaValThrAspGlnArgHisArg : 130 !..!|||:!!|||!..:!!:!! !!||||||||| !:!!! ! !!! !..! !!||| uGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArg 227199 : CGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGA : 227255 131 : SerIleMetLeuGluCysThrAlaPheSerArgLysLeuIleThrMetCysAlaAlaP : 150 !:!:!:|||:!! !! !.!! !!:!.!!|||||||||||||||!!:|||.!! !| AsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPheP 227256 : AACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTT : 227315 151 : heLeuTyrThrGlyGlyLeuSerHisHisThrLeuPheProPheLeu<-><->SerLy : 167 ||:!!!:!!::... ::: :::! !:!! ! |||.!! ! ||| heValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerVa 227316 : TCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGT : 227372 168 : sAspLysGlnGlnAspAsnLeuThrIleArgProLeuIleTyrProGlyTyrAspVal : 186 ! ! !:!!.!.! |||! !!:! !! !! !:!! !:!||| ! ! :!! lAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIle 227373 : TGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATC : 227429 187 : TyrValAspSerGlnAlaSerProAlaTyrGluIleIlePheCysLeuHisLeuValT : 206 !!.!||| !!:: !|||||| ! !!||||||.!!|||! :!!!!.!!!|||| IleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValT 227430 : ATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAA : 227489 207 : hrAlaLeuValIleTyrThrIleSerThrGlyAlaTyrSerLeuLeuValIlePheIl : 225 ||!.!:!!|||:!::!! !:!!!!!:!!!.!|||! !|||:!! !!.!:!:.!! hrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAl 227490 : CAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGC : 227546 226 : eMetHisIleSerGlyGlnIleGlnIleGlnIleThrArgLeuGlnAsnLeu<-><-> : 243 :!:||| !!!!||||||!!::!!:!: !:!::!! !!||| !:!!||| aValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAsp 227547 : GGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGAC : 227603 244 : LysLysAlaGlnMetGluLysGlyHisArgAsnProLeuAlaIleIleValTyrAsnH : 262 !:!|||.!.|||...||| !! !:!! !:!!|||! !|||||| !:!!| GlyArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValThrHisH 227604 : GGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACC : 227663 263 : isValGluIleLeuArg : 267 |||||..!||||||!:! isValArgIleLeuLys 227664 : ACGTTCGAATATTGAAG : 227680 vulgar: gi|383850526|ref|XP_003700846.1| 15 267 . KQ414889.1 226912 227680 + 243 M 23 69 G 1 0 M 40 120 G 0 3 M 86 258 G 0 6 M 77 231 G 0 6 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226913 227680 243 + . gene_id 12 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226913 227680 . + . KQ414889.1 exonerate:protein2genome:local exon 226913 227680 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226913 227680 243 + . alignment_id 12 ; Query gi|383850526|ref|XP_003700846.1| ; Align 226913 16 69 ; Align 226982 40 120 ; Align 227105 80 258 ; Align 227369 166 231 ; Align 227606 243 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 243 Query range: 6 -> 234 Target range: 259727 -> 260417 7 : AspAsnGlnValLeuLysAsnSerTyrTyrSerSerAspIleGlnTyrAlaLeuGlnM : 26 :!!!!...!|||!!! !.!.!!! !!:!!!!||| !!! !.!.|||::!||||||. AsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerLeuGlnP 259728 : AACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCCAAT : 259785 27 : etThrGlnTrpThrLeuLysProIleGlyIleTrpProValIleTyrHisArgValTh : 45 !.!.!!:!||| !||||||||||||||| !|||||| ! ! ! !..!|| heAsnArgTrpPheLeuLysProIleGlyAlaTrpProPro---SerSerSerThrTh 259786 : TTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCT---TCATCCTCCACGAC : 259839 46 : rArgArgGluGlnLeuMetSerValValLeuMetIlePheGlyPheSerAlaLeuCys : 64 ||||! !|||:!!:!!!!:||||||:!!|||!!:.!!.!! !!!:!|||.!!:!! rArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIleLeu 259840 : CAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATACTG : 259896 65 : PheValLeuIleProSerGly<->HisTyrIlePhePheThrGlyArgIleSerThrL : 83 !!..!|||||||||!!!! ! ||| :!!.!! ! !! !!!!:!:! !! !| ValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrMetL 259897 : GTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGA : 259956 84 : ysIleSerLeuPheGlyProValGlyPheCysLeuSerThrThrValLysTyrValTy : 102 ||! !.!:!!.!!||||||:!! ! !!! !!! ! ! !:!!!!.|||..! ysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrThrTh 259957 : AAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACACAAC : 260013 103 : rLeuGlyLeuArgAlaSerIlePheGlyArgCysIleGluHisValGluArgAspTrp : 121 ||| !||||||!.!!!! !.!. !!!!|||:!:||||||||||||!.!|||||| rLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAspTrp 260014 : GTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGATTGG : 260070 122 : LysAlaValThrAspGlnArgHisArgSerIleMetLeuGluCysThrAlaPheSerA : 141 !:! !:!!||| :!!!:! !!!:!!:!:!:||||||..!! !.!! !|||.!!| ArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheGlyA 260071 : AGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCGGCA : 260130 142 : rgLysLeuIleThrMetCysAlaAlaPheLeuTyrThrGlyGlyLeuSerHisHisTh : 160 || ! :!! !.!! ||||||||||||:!! ! !|||! !|||!!! ! ! rgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCysLe 260131 : GATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTT : 260187 161 : rLeuPheProPheLeuSerLysAspLysGlnGlnAspAsnLeuThr<-><->IleArg : 177 !:!! !!!. !!!!:!!! ! !||| !! ||| !||| :!!!.! uValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleValHis 260188 : GGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCAT : 260244 178 : ProLeuIleTyrProGlyTyrAspValTyrValAspSerGlnAlaSerProAlaTyrG : 197 ! !||| ! ! !!! !||| ! ! ! :!!:!! !.!.! !|||||| ! !!| LeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetAsnG 260245 : CTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGAACG : 260304 198 : luIleIlePheCysLeuHisLeuValThrAlaLeuValIleTyrThrIleSerThrGl : 216 |||||:!!.!! !:!!!!.!!!|||:!!!.!!!!:!!:!: !!:!!! !!!!..!|| luIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrValGl 260305 : AGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGG : 260361 217 : yAlaTyrSerLeuLeuValIlePheIleMetHisIleSerGlyGlnIleGlnIle : 234 | !!:!|||||| !!.!:!!.!.! ! ||| !!!||||||:!:.!.:!: yIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnVal 260362 : AATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTG : 260417 vulgar: gi|383850526|ref|XP_003700846.1| 6 234 . KQ414889.1 259727 260417 + 243 M 33 99 G 1 0 M 31 93 G 0 3 M 104 312 G 0 6 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259728 260417 243 + . gene_id 13 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259728 260417 . + . KQ414889.1 exonerate:protein2genome:local exon 259728 260417 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 259728 260417 243 + . alignment_id 13 ; Query gi|383850526|ref|XP_003700846.1| ; Align 259728 7 99 ; Align 259827 41 93 ; Align 259923 72 312 ; Align 260241 176 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 229 Query range: 16 -> 242 Target range: 204221 -> 204899 17 : SerSerAspIleGlnTyrAlaLeuGlnMetThrGlnTrpThrLeuLysProIleGlyI : 36 ..!..!|||:!:::!|||||| !!::.!...!:!! !! !||| ! !:!!||| GluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyA 204222 : GAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTG : 204279 37 : leTrpProValIleTyrHisArgValThrArgArgGluGlnLeuMetSerValValLe : 55 ||||||:!! ! :!! ! :!!! ! ! !::!|||:!: !! !:!! laTrpProIleProValAsnSer---SerProPheThrArgLeuValArgArgIleGl 204280 : CGTGGCCGATTCCAGTGAACTCC---TCTCCGTTCACGAGGCTAGTACGGCGAATAGA : 204333 56 : uMetIlePheGlyPheSerAlaLeuCysPheValLeuIleProSerGlyHisTyrIle : 74 ! :!! !! !::: ... ...:!!:!!:!!|||.!! ! |||:!: uHisValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrVal 204334 : ACACGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTG : 204390 75 : PhePheThrGlyArgIle<->SerThrLysIleSerLeuPheGlyProValGlyPheC : 93 |||.!.! !! !!:!! ! !.!! !::::!:!.!:!!.!!||||||:!!! ! !| PheLeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnC 204391 : TTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACT : 204450 94 : ysLeuSerThrThrValLysTyrValTyrLeuGlyLeuArgAlaSerIlePheGlyAr : 112 || !! ! ! ! !!|||||| ! !:!! !! !||| !..!! !.!! !!: ysSerIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLy 204451 : GCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAA : 204507 113 : gCysIleGluHisValGluArgAspTrpLysAlaValThrAspGlnArgHisArgSer : 131 ! !!:!:.!. !:!!..!|||||||||! !! !!.!||||||:!! :!!|||! ! sSerLeuAsnThrIleArgArgAspTrpIleGluAlaThrAspGlu---AsnArgLeu 204508 : GAGTTTGAACACCATCAGACGCGACTGGATAGAGGCTACGGATGAA---AATCGGTTG : 204561 132 : IleMetLeuGluCysThrAlaPheSerArgLysLeuIleThrMetCysAlaAlaPheL : 151 |||.!.! !..! .!! !.!!.!!|||!:!:!!:!: !!!:...|||||| !: IlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrM 204562 : ATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTA : 204621 152 : euTyrThrGlyGlyLeuSerHisHisThrLeuPheProPheLeu<->SerLysAspLy : 169 !!||| !|||||||||!!!:!!...|||:!!.!!|||!!.||| .!!! ! ! etTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleVa 204622 : TGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGT : 204678 170 : sGlnGlnAspAsnLeuThrIleArgProLeuIleTyrProGlyTyrAspValTyrVal : 188 ! !! ||||||:!!||||||||||||||| ! !|||! !||| |||::: lThrProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePhe 204679 : AACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttcttt : 204735 189 : AspSerGlnAlaSerProAlaTyrGluIleIlePheCysLeuHisLeuValThrAlaL : 208 :::..!||| !|||||| !|||||||||:!!||| |||!!.:!!:!!.!!!.!! AsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyP 204736 : aacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTT : 204795 209 : euValIleTyrThrIleSerThrGlyAlaTyrSerLeuLeuValIlePheIleMetHi : 227 !!|||! !|||.!!:!!! !!:!|||.!!! !.!!:!!! !!.!:!:|||:!!:!:|| heValThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHi 204796 : TTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCA : 204852 228 : sIleSerGlyGlnIleGlnIleGlnIleThrArgLeuGlnAsnLeu : 242 | !!!.!!..!:!:::!||| !:!:!.!!:!:!!.!. ||| sAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeu 204853 : CGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTT : 204899 vulgar: gi|383850526|ref|XP_003700846.1| 16 242 . KQ414889.1 204221 204899 + 229 M 27 81 G 1 0 M 36 108 G 0 3 M 47 141 G 1 0 M 37 111 G 0 3 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204222 204899 229 + . gene_id 14 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204222 204899 . + . KQ414889.1 exonerate:protein2genome:local exon 204222 204899 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 204222 204899 229 + . alignment_id 14 ; Query gi|383850526|ref|XP_003700846.1| ; Align 204222 17 81 ; Align 204303 45 108 ; Align 204414 81 141 ; Align 204555 129 111 ; Align 204669 166 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 212 Query range: 11 -> 242 Target range: 194141 -> 194831 12 : LysAsnSerTyrTyrSerSerAspIleGlnTyrAlaLeuGlnMetThrGlnTrpThrL : 31 :::||| ! !!|||!.!! !|||! !:!!||||||:!!!:!:!:.!!:!! ! !| ArgAsnValAsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuL 194142 : CGCAACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTC : 194199 32 : euLysProIleGlyIleTrpProValIleTyrHisArgValThrArgArgGluGlnLe : 50 ||! !|||||||||||||||||| .....!! !:!!! !|||!!:::!:! euThrProIleGlyIleTrpPro---------ArgGluAspSerLeuArgAspArgVa 194200 : TAACACCGATCGGTATCTGGCCA---------AGGGAGGATTCTCTTCGCGACAGAGT : 194247 51 : uMetSerValValLeuMetIlePheGlyPheSerAlaLeuCysPheValLeuIlePro : 69 ! ! !!!.!! !! ! ! ! !|||:!! !:!!||||||:!!|||:!!||| lArgLeuPheAlaGlnThrGlyValValPheAlaLeuMetCysPheLeuLeuValPro 194248 : CCGACTGTTCGCTCAAACTGGCGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCT : 194304 70 : SerGlyHisTyrIlePhePheThrGlyArgIleSerThrLys<->IleSerLeuPheG : 88 !! ! !|||! !!:!||| ! !!..! ! !|||!:! !!:!.!:!!.!!! HisValIleTyrThrTyrPheAspCysGluAspLeuThrArgTyrMetLysValIleA 194305 : CACGTGATCTACACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCG : 194364 89 : lyProValGlyPheCysLeuSerThrThrValLysTyrValTyrLeuGlyLeuArgAl : 107 .! !! !! !||| !!|||! !.!!! !:!!|||!:! ! :!! !:!!!.! laAlaGlnValPheSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnAr 194365 : CGGCGCAAGTGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAG : 194421 108 : aSerIlePheGlyArgCysIleGluHisValGluArgAspTrpLysAlaValThrAsp : 126 !!.! .!! !! !|||:!: !.!.:!!|||! !.!.!::!:!! !||| ! ! gLysGluIleArgPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCys 194422 : GAAAGAGATCAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGC : 194478 127 : GlnArgHisArgSerIleMetLeuGluCysThrAlaPheSerArgLysLeuIleThrM : 146 :!!..! !!|||..!:!:||| !.!.|||.!! !.!!.!!||| !!!! !|||: GluGluAspArgGlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrL 194479 : GAGGAGGATCGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCC : 194538 147 : etCysAlaAlaPheLeuTyrThrGlyGlyLeuSerHisHisThrLeuPheProPheLe : 165 !!! ! !!.!.!!! !||| !|||!.!||| !!:!!|||! !:!!.!.|||.!.:! euTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMe 194539 : TGTACTTGGGACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGAT : 194595 166 : uSer<->LysAspLysGlnGlnAspAsnLeuThrIleArgProLeuIleTyrProGly : 183 !||| !:! ! :!!:!!|||||| !||| ! !|||||| !||| !.!! tSerGluArgIleValLysGluAspAsnSerThrGlnIleProLeuProTyrLeuSer 194596 : GTCGGAGAGGATTGTCAAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGC : 194652 184 : TyrAspValTyrValAspSerGlnAlaSerProAlaTyrGluIleIlePheCysLeuH : 203 !! !!|||!:! !!! ! !:!!! !|||||| !|||||||||! !||| !! !! AsnTyrValPhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerG 194653 : AACTATGTTTTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGC : 194712 204 : isLeuValThrAlaLeuValIleTyrThrIleSerThrGlyAlaTyrSerLeuLeuVa : 222 !.:!!:!!! !::! !:!!|||! :!!! !:! !||| !|||||||||:!!!. lnIleLeuIleSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAl 194713 : AGATACTGATTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGC : 194769 223 : lIlePheIleMetHisIleSerGlyGlnIleGlnIleGlnIleThrArgLeuGlnAsn : 241 !! !.!!||||||||| !!!!||| !.!!:!!:!: ! !! !|||:!!:!!!.! aThrIleIleMetHisCysCysGlyLeuPheGluValThrSerArgArgMetGluThr 194770 : TACTATTATTATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGATGGAGACT : 194826 242 : Leu : 242 :!! Ile 194827 : ATT : 194831 vulgar: gi|383850526|ref|XP_003700846.1| 11 242 . KQ414889.1 194141 194831 + 212 M 27 81 G 3 0 M 42 126 G 0 3 M 83 249 G 0 3 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194142 194831 212 + . gene_id 15 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194142 194831 . + . KQ414889.1 exonerate:protein2genome:local exon 194142 194831 . + . insertions 6 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 194142 194831 212 + . alignment_id 15 ; Query gi|383850526|ref|XP_003700846.1| ; Align 194142 12 81 ; Align 194223 42 126 ; Align 194352 84 249 ; Align 194604 167 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 336 -> 395 Target range: 297641 -> 297818 337 : GlnCysSerGlnIleGlyLysAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaL : 356 |||..!..!:!!.!!|||!!.|||:!!|||.!.|||!!:||||||||||||||| !!! GlnAlaGluLysPheGlyAsnAlaAlaTyrAsnIleGluTrpTyrAsnLeuProProA 297642 : CAGGCTGAAAAATTCGGCAATGCAGCTTATAACATCGAATGGTACAACTTACCGCCAA : 297699 357 : ysAsnAlaHisAspLeuIleLeuLeuAsnLeuIleSerGlnAsnProProLysLeuLe : 375 !.!..|||! !||||||:!:|||:!!! ! !|||:!!:!! !||||||!:!||| snArgAlaLeuAspLeuValLeuMetIleGlyIleAlaLysPheProProArgLeuTh 297700 : ACAGGGCTCTCGATCTGGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCAC : 297756 376 : uAlaGlyArgIleIleGluLeuThrLeuAsnThrPheSerAlaValValLysThrSer : 394 !...|||:::|||...:::::::!!:!!|||||||||||||||||| !!:: ||| rGlyGlyLysIlePheAspIleSerIleAsnThrPheSerAlaValArgArgGlnSer 297757 : AggtggaaaaatattcgatatatCGATAAACACGTTCAGTGCCGTACGTAgacaaagt : 297813 395 : Val : 395 ::: Leu 297814 : tta : 297818 vulgar: gi|383850526|ref|XP_003700846.1| 336 395 . KQ414889.1 297641 297818 + 150 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297642 297818 150 + . gene_id 16 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297642 297818 . + . KQ414889.1 exonerate:protein2genome:local exon 297642 297818 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297642 297818 150 + . alignment_id 16 ; Query gi|383850526|ref|XP_003700846.1| ; Align 297642 337 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 267 -> 337 Target range: 234524 -> 234914 268 : PheSerGluAsnValGlnAlaAlaLeuGluGluIleCysPheThrGluValValGluC : 287 |||! !..!|||:!!:!! !!.!:!!.!. !||||||.!...!|||:!!|||! !| PheIleArgAsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuValGlyC 234525 : TTTATACGGAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGAT : 234582 288 : ysThrIleAsnMetCysMetLeuGlnTyrTyrCysLeuMetSer >>>> Target : 302 |||||:!:|||||||||||||||:!!|||||| |||:!:!!! 18 ysThrLeuAsnMetCysMetLeuGluTyrTyr---LeuLeuThr++ 234583 : GCACGTTGAACATGTGCATGCTCGAGTATTAT---TTACTCACGgt............ : 234626 303 : Intron 1 >>>> TrpArgSerSerAspGlyValLysIleIleThrTyrPheThrL : 316 9 bp !::|||...::: |||::: !:!!||| !!! !: ++GluLysSerLysGlu------LysLeuAlaSerTyrValIleV 234627 : .............agGAAAAgtcgaaggaa------aaattagCTTCATACGTCATCG : 234849 317 : euLeuCysSerPheThrSerAsnIlePheIlePheCysTyrIleGlyGluIleLeuTh : 335 !!! ! |||.!.|||! ||||||||||||||||||||||||||||||! ||||| alTyrValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuTh 234850 : TGTACGTGTCCATGACATTtaatatattcatattttgttACATCGGAGAGACGCTTAC : 234906 336 : rGluGln : 337 ||||||| rGluGln 234907 : AGAGCAG : 234914 vulgar: gi|383850526|ref|XP_003700846.1| 267 337 . KQ414889.1 234524 234914 + 149 M 30 90 G 1 0 M 3 9 5 0 2 I 0 185 3 0 2 M 5 15 G 2 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234525 234914 149 + . gene_id 17 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234525 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234525 234623 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 234525 234914 149 + . alignment_id 17 ; Query gi|383850526|ref|XP_003700846.1| ; Align 234525 268 90 ; Align 234615 299 9 ; Align 234813 302 15 ; Align 234828 309 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 276 -> 346 Target range: 286806 -> 287016 277 : GluGluIleCysPheThrGluValValGluCysThrIleAsnMetCysMetLeuGlnT : 296 !!:!!::!:|||!:! !.!...!||| !...! !||| .!. !|||! !..!! AspAspLeuCysTyrTyrHisThrValMetAlaIleIleAlaPheValMetTyrSerL 286807 : GACGACTTGTGTTATTACCATACTGTAATGGCAATAATTGCATTCGTCATGTACTCGT : 286864 297 : yrTyrCysLeuMetSerTrpArgSerSerAspGlyValLysIleIleThrTyrPheTh : 315 ! !!!! !..!|||..!..!|||!!: !:!! !! |||||||||! !|| euSerValPhe***GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysTh 286865 : TGTCAGTTTTCTAGGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCAC : 286921 316 : rLeuLeuCysSerPheThrSerAsnIlePheIlePheCysTyrIleGlyGluIleLeu : 334 ||||||| |||||||||! !|||:!!||||||.!!||||||||||||||||||||| rLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeu 286922 : GTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTC : 286978 335 : ThrGluGlnCysSerGlnIleGlyLysAlaSerTyr : 346 :!!|||||| ||| ....!!! !||| SerGluGlnValPhePheIleThrSerThrIleTyr 286979 : TCCGAACaggtatttttcattacttcaACGATCTAT : 287016 vulgar: gi|383850526|ref|XP_003700846.1| 276 346 . KQ414889.1 286806 287016 + 138 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286807 287016 138 + . gene_id 18 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 286807 287016 . + . KQ414889.1 exonerate:protein2genome:local exon 286807 287016 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286807 287016 138 + . alignment_id 18 ; Query gi|383850526|ref|XP_003700846.1| ; Align 286807 277 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 276 -> 346 Target range: 280019 -> 280229 277 : GluGluIleCysPheThrGluValValGluCysThrIleAsnMetCysMetLeuGlnT : 296 !!:!!::!!|||!:! !.!.:!!||| !...! !||| .!. !|||! !..!! AspAspLeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerL 280020 : GACGACTTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGT : 280077 297 : yrTyrCysLeuMetSerTrpArgSerSerAspGlyValLysIleIleThrTyrPheTh : 315 ! !!!! !..!|||..!..!!:!|||!.!:!! !! .!!||||||!!.! euSerValPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMe 280078 : TGTCAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAAT : 280134 316 : rLeuLeuCysSerPheThrSerAsnIlePheIlePheCysTyrIleGlyGluIleLeu : 334 !!!!||| |||!!.|||! !|||:!!||||||.!!||||||||||||||||||||| tPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeu 280135 : GTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTC : 280191 335 : ThrGluGlnCysSerGlnIleGlyLysAlaSerTyr : 346 :!!|||||| |||........!! !||| SerGluGlnValPhePheIleSerSerThrIleTyr 280192 : TCCGAACaggtatttttcatttcttcaacGATCTAT : 280229 vulgar: gi|383850526|ref|XP_003700846.1| 276 346 . KQ414889.1 280019 280229 + 128 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280020 280229 128 + . gene_id 19 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280020 280229 . + . KQ414889.1 exonerate:protein2genome:local exon 280020 280229 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280020 280229 128 + . alignment_id 19 ; Query gi|383850526|ref|XP_003700846.1| ; Align 280020 277 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 300 -> 349 Target range: 219328 -> 219475 301 : SerTrpArgSerSerAspGlyValLysIleIleThrTyrPheThrLeuLeuCysSerP : 320 ..!|||!:!|||!:!|||! !..!!.. !:!:||||||.!!! !|||||| |||. GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 321 : heThrSerAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGlnCysSe : 339 !.||| |||||||||||||||||||||||||||||||||:!!.!!|||||| .. euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGlnValGl 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAggtaga : 219443 340 : rGlnIleGlyLysAlaSerTyrGluIleAsp : 349 . ... ||| ::: |||::: uThrPhePheLysIleAlaLysIleIleGlu 219444 : aacatttttcaaaattgcaaaaattatcgaa : 219475 vulgar: gi|383850526|ref|XP_003700846.1| 300 349 . KQ414889.1 219328 219475 + 121 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219475 121 + . gene_id 20 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219329 219475 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219475 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219475 121 + . alignment_id 20 ; Query gi|383850526|ref|XP_003700846.1| ; Align 219329 301 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 298 -> 337 Target range: 224317 -> 224434 299 : LeuMetSerTrpArgSerSerAspGlyValLysIleIleThrTyrPheThrLeuLeuC : 318 !!!......||| |||||| !! !..!!.. :!:|||||||||! !|||||| PheGlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuM 224318 : TTTCaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCA : 224375 319 : ysSerPheThrSerAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGl : 337 |||...||| ||||||||||||||||||||||||||||||:!::!!.!!||||| etSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl 224376 : TGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAca : 224432 338 : n : 337 | n 224433 : g : 224434 vulgar: gi|383850526|ref|XP_003700846.1| 298 337 . KQ414889.1 224317 224434 + 116 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224318 224434 116 + . gene_id 21 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224318 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224318 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224318 224434 116 + . alignment_id 21 ; Query gi|383850526|ref|XP_003700846.1| ; Align 224318 299 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 292 -> 339 Target range: 305076 -> 305217 293 : MetLeuGlnTyrTyrCysLeuMetSerTrpArgSerSerAspGlyValLysIleIleT : 312 .!.||| ||| ..!..!|||..!||||||:!! !|||!..:!!! !| PheLeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrT 305077 : TTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAA : 305134 313 : hrTyrPheThrLeuLeuCysSerPheThrSerAsnIlePheIlePheCysTyrIleGl : 331 ||||| ..!|||||| ||| ! |||! !||||||||||||!!.||||||||||| hrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGl 305135 : CATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGG : 305191 332 : yGluIleLeuThrGluGlnCysSer : 339 ||||||||||! !|||:!! ||| yGluIleLeuMetGluLysValSer 305192 : TGAGATTCTTATGGAAAAGGTGagt : 305217 vulgar: gi|383850526|ref|XP_003700846.1| 292 339 . KQ414889.1 305076 305217 + 116 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305077 305217 116 + . gene_id 22 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305077 305217 . + . KQ414889.1 exonerate:protein2genome:local exon 305077 305217 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305077 305217 116 + . alignment_id 22 ; Query gi|383850526|ref|XP_003700846.1| ; Align 305077 293 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 295 -> 341 Target range: 261718 -> 261856 296 : TyrTyrCysLeuMetSerTrpArgSerSerAspGlyValLysIleIleThrTyrPheT : 315 :::::: |||.....!||| !..!..!||| ! !!!.:!: !|||||||||! PhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheM 261719 : ttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCA : 261776 316 : hrLeuLeuCysSerPheThrSerAsnIlePheIlePheCysTyrIleGlyGluIleLe : 334 !:!!||| :!!.!! !! !|||:!!||||||.!!|||||||||||||||||||| etMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLe 261777 : TGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACT : 261833 335 : uThrGluGlnCysSerGlnIle : 341 |||||||||| ..!!!.:!: uThrGluGlnValGlnHisLeu 261834 : AACGGAACAGGTACAACATTTG : 261856 vulgar: gi|383850526|ref|XP_003700846.1| 295 341 . KQ414889.1 261718 261856 + 113 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261719 261856 113 + . gene_id 23 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 261719 261856 . + . KQ414889.1 exonerate:protein2genome:local exon 261719 261856 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 261719 261856 113 + . alignment_id 23 ; Query gi|383850526|ref|XP_003700846.1| ; Align 261719 296 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 298 -> 337 Target range: 264531 -> 264648 299 : LeuMetSerTrpArgSerSerAspGlyValLysIleIleThrTyrPheThrLeuLeuC : 318 !!!..!..!|||..!||| ||| ...::: !|||||||||! !:!!||| PheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuI 264532 : TTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATACTGA : 264589 319 : ysSerPheThrSerAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGl : 337 |||.!. !.!!|||||||||:!!.!.||||||||||||||||||||||||||||| leSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGl 264590 : TATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGca : 264646 338 : n : 337 | n 264647 : g : 264648 vulgar: gi|383850526|ref|XP_003700846.1| 298 337 . KQ414889.1 264531 264648 + 112 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264532 264648 112 + . gene_id 24 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264532 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264532 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264532 264648 112 + . alignment_id 24 ; Query gi|383850526|ref|XP_003700846.1| ; Align 264532 299 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 300 -> 340 Target range: 272836 -> 272956 301 : SerTrpArgSerSerAspGlyValLysIleIleThrTyrPheThrLeuLeuCysSerP : 320 ..!|||! !..! !||| ! !!..:!!! !|||||||||! !:!!||| |||. GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 321 : heThrSerAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGlnCysSe : 339 !.||| |||||||||||| |||||||||||||||||||||||||||::! ! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArgValMe 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGGTAAT : 272951 340 : rGln : 340 ||| tGln 272952 : gcaa : 272956 vulgar: gi|383850526|ref|XP_003700846.1| 300 340 . KQ414889.1 272836 272956 + 112 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 272956 112 + . gene_id 25 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272837 272956 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272956 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 272956 112 + . alignment_id 25 ; Query gi|383850526|ref|XP_003700846.1| ; Align 272837 301 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 266 -> 337 Target range: 214459 -> 214740 267 : ArgPheSerGluAsnValGlnAlaAlaLeuGluGluIleCysPheThrGluValValG : 286 ||||||! !||| !|||:!! !||||||..!:!!:!!! !|||.!!|||:!!:!!! ArgPheLeuGluLeuValGluLysAlaLeuArgGlnValSerPheAlaGluLeuLeuV 214460 : AGATTCTTAGAGCTCGTGGAGAAAGCACTTCGGCAAGTATCTTTCGCTGAATTATTAG : 214517 287 : luCysThrIleAsnMetCysMetLeuGlnTyrTyrCysLeuMetSerTrpArgSerSe : 305 !||||||:!:|||:!:|||:!::!! !|||||| :!!! ! !!! |||... alCysThrValAsnLeuCysLeuValGlyTyrTyrIleIleThrValCysArgGlyHi 214518 : TATGCACGGTGAATCTCTGTCTCGTTGGATATTACATAATAACGGTATGCAGAggaca : 214574 306 : rAspGlyValLysIleIleThrTyrPheThrLeuLeuCysSerPheThrSer{As} : 323 ... ... ||| ||| {!:} sLysAsnAsnSerArgLysIleTyrGlnThrSerSerAsnPhe***TyrTyr{Se}+- 214575 : taaaaataattcacgcaaaatatatcaaacatcgtcaaatttttaatattat{ag}ga : 214630 324 : >>>> Target Intron 1 >>>> {n}IlePheIlePheCysTyrIleGlyGluI : 333 68 bp {!}|||||||||||||||||||||||||||: +-{r}IlePheIlePheCysTyrIleGlyGluL 214631 : .........................aa{t}attttcatattttgttaCATAGGCGAGC : 214726 334 : leLeuThrGluGln : 337 !!:!!:!!|||||| euValSerGluGln 214727 : TTGTGTCTGAACAG : 214740 vulgar: gi|383850526|ref|XP_003700846.1| 266 337 . KQ414889.1 214459 214740 + 110 M 56 168 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214460 214740 110 + . gene_id 26 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214460 214629 . + . KQ414889.1 exonerate:protein2genome:local exon 214460 214629 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214630 214631 . + . intron_id 1 ; splice_site "gA" KQ414889.1 exonerate:protein2genome:local intron 214630 214697 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214696 214697 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 214698 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214698 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214460 214740 110 + . alignment_id 26 ; Query gi|383850526|ref|XP_003700846.1| ; Align 214460 267 168 ; Align 214699 324 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 300 -> 336 Target range: 228247 -> 228355 301 : SerTrpArgSerSerAspGlyValLysIleIleThrTyrPheThrLeuLeuCysSerP : 320 ..!|||!.! !!!.!!!: !..! !:!!||||||! .!!||||||! |||| GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerP 228248 : GAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCT : 228305 321 : heThrSerAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGlu : 336 ||||| |||||||||||||||||||||||||||||||||:!!.!!||| heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGlu 228306 : TTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAA : 228355 vulgar: gi|383850526|ref|XP_003700846.1| 300 336 . KQ414889.1 228247 228355 + 104 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228248 228355 104 + . gene_id 27 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 228248 228355 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228355 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228248 228355 104 + . alignment_id 27 ; Query gi|383850526|ref|XP_003700846.1| ; Align 228248 301 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850526|ref|XP_003700846.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 300 -> 337 Target range: 277371 -> 277482 301 : SerTrpArgSerSerAspGlyValLysIleIleThrTyrPheThrLeuLeuCysSerP : 320 ..!||| !..!||||||! ! !! !!!:! !|||:!!|||! !:!!||| |||. GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 321 : heThrSerAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGln : 337 !. ||||||||| ! ! |||||||||||||||||||||||||||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAG : 277482 vulgar: gi|383850526|ref|XP_003700846.1| 300 337 . KQ414889.1 277371 277482 + 100 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277482 100 + . gene_id 28 ; sequence gi|383850526|ref|XP_003700846.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277482 100 + . alignment_id 28 ; Query gi|383850526|ref|XP_003700846.1| ; Align 277372 301 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1440 Query range: 7 -> 402 Target range: 303169 -> 305937 8 : AsnLeuAsnTyrGluAsnAspIleIleTyrValThrLysTyrSerArgTrpIleLeuV : 27 ||||||||||||:!!!!.||||||:!!||||||||||||:!!|||!:!||||||||| AsnLeuAsnTyrLysLysAspIleValTyrValThrLysHisSerLysTrpIleLeuL 303170 : AATTTGAATTACAAGAAAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCCTGA : 303227 28 : alSerIleGlyIleTrpProAlaSerLeuLysGlySerAlaLysPheLeuSerLysIl : 46 !|||:!!||||||||||||||| !||| ! ! !!!!||| !|||||| !!||||| ysSerLeuGlyIleTrpProAlaValLeuAspGluThrAlaGlyPheLeuProLysIl 303228 : AGTCCCTTGGTATTTGGCCAGCCGTGTTGGACGAAACCGCAGGATTCCTACCAAAAAT : 303284 47 : eAlaIleGlyPheGlyAsnLeuValLeuPhePheAlaIleIleProPheSerLeuHis : 65 |.!!||||||.!!.!!||||||||||||!!.|||.!!:!:||||||! !! !|||||| eThrIleGlyLeuSerAsnLeuValLeuLeuPheThrValIleProCysIleLeuHis 303285 : CACCATTGGACTCAGTAATTTGGTTCTATTATTCACCGTGATACCGTGTATTCTACAC : 303341 66 : IleValLeuGluGlnLysAspThrValIleMetLeuLysMetLeuGlyPheLeuSerP : 85 |||:!!!!!|||||||||||||||:!!|||! ||||||:!:!!!|||.!.||||||| IleIlePheGluGlnLysAspThrIleIleArgLeuLysLeuPheGlyLeuLeuSerP 303342 : ATAATATTCGAACAAAAGGATACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTT : 303401 86 : heCysLeuIleSerValLeuLysTyrTrpAlaLeuAlaMetArgLysProLysIleGl : 104 ||||||||||||||:!!:!!||||||||||||||||||! !|||||||||!:!|||:! heCysLeuIleSerLeuMetLysTyrTrpAlaLeuAlaThrArgLysProArgIleLy 303402 : TCTGTTTGATCTCGTTGATGAAGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAA : 303458 105 : uArgCysIleGluLeuMetGlnThrAspTrpLysGln >>>> Target Intron : 117 !..!||||||||| !:!!|||!:!|||||||||:!! 938 bp sGluCysIleGluGluValGlnSerAspTrpLysGlu++ 303459 : AGAATGTATAGAAGAGGTGCAAAGTGATTGGAAAGAGgt................... : 303499 118 : 1 >>>> ValGluPheArgArgAsnArgHisMetMetLeuLysTyrGlyLysValGl : 133 ||||||! !! !|||:!!|||.!.||||||||||||||||||:!!:!!|| ++ValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetGl 303500 : ......agGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGGG : 304483 134 : yArgAspLeuThrIleLeuCysIleValPheMetTyrSerGlyGlyThrIleTyrHis : 152 ||||:!!|||||||||:!!||| !:!!|||||||||!!!|||||||||||||||||| yArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHis 304484 : TCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCAC : 304540 153 : ThrIleMetGlnTyrAlaIleGlySerPheIleAspGluHisAsnArgThrIleLysP : 172 |||:!!||||||!:!|||! !|||!!!!:!:!:||||||:!!|||||||||||||||| ThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgThrIleLysP 304541 : ACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAAC : 304600 173 : roLeuValTyrProThrTyrSerAlaLeuTyrAspValGlnLysIleHisValTyrVa : 191 |||||||||||||||||||||||||||||!:!|||||||||! !! !! !:!!|||! roLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIleTyrGl 304601 : CGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGA : 304657 192 : lLeuValTyrThrValHisCysMetCysGlyTyrValIleTyrSerValThrAlaGly : 210 !||||||||| !|||||||||||||||||||||||||||||||||:!!||||||||| uLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThrAlaGly 304658 : ATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGT : 304714 211 : AlaCysGlyLeuAlaAlaLeuPheAlaThrHisThrCysGlyGlnIleAspIleValL : 230 |||||||||||||||||||||||||||||||||.!!|||||||||||||||||||||: AlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValM 304715 : GCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTA : 304774 231 : euSerArgLeuAsnGlyLeuValAspAspAsnLeuMetArgHisAspAspLeuAsnGl : 249 !!|||||||||..!! !|||||| ||| !! ..! ..!||||||:!!:! etSerArgLeuGlyAspLeuVal------AsnSerLysGluSerSerAspLeuAspLy 304775 : TGTCTCGATTGGGTGATCTTGTC------AACAGCAAAGAATCATCTGATTTAGATAA : 304825 250 : uArgLeuIleGluIleValGluHisHisLeuArgThrLeu{Ar} >>>> Target : 263 !|||||||||||||||||||||||||||||||||! !|||{||} 70 sArgLeuIleGluIleValGluHisHisLeuArgIleLeu{Ar}++ 304826 : ACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTA{AG}gt............ : 304871 264 : Intron 2 >>>> {g}PheSerAlaMetMetGluThrValLeuGlnGluValCysP : 277 bp {|}|||||||||!!::!!:!!|||||||||||||||||||||| ++{g}PheSerAlaIleValGlnThrValLeuGlnGluValCysP 304872 : .............ag{A}TTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCT : 304979 278 : heLeuGluPheValGlySerThrPheMetIleCysLeuLeuGluTyrTyrThrIleVa : 296 |||||||||||:!!|||||||||!!.:!!||||||||||||||||||||| !|||.. heLeuGluPheIleGlySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysIleTh 304980 : TCTTGGAATTCATTGGTTCTACCTTACTGATATGTCTACTTGAATACTACTGTATAAC : 305036 297 : l >>>> Target Intron 3 >>>> AspTrpLysGlnSerAsnThrIleGlyL : 306 ! 62 bp ||||||:!!...|||||||||:!!.!!| r++ ++AspTrpGluSerSerAsnThrValSerL 305037 : Ggt.........................agGATTGGGAGAGCAGTAATACCGTTAGTC : 305128 307 : euThrThrTyrThrLeuLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysTy : 325 ||||||||||||||:!!||||||||||||:!!|||||||||||||||||||||||||| euThrThrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTy 305129 : TTACAACATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTA : 305185 326 : rIleGlyAspLeuLeuIleGluLys >>>> Target Intron 4 >>>> SerT : 335 |||||||!!::!!|||!!:|||||| 413 bp |||! rIleGlyGluIleLeuMetGluLys++ ++SerS 305186 : CATTGGTGAGATTCTTATGGAAAAGgt.........................agAGCA : 305628 336 : hrSerIleGlyThrSerSerPheGluIleAspTrpTyrArgLeuProThrLysThrIl : 354 :!|||:!!||| !|||!!!||| !|||..!||||||!.!||||||||||||||||| erSerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIl 305629 : GTAGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGAT : 305685 355 : eArgGlyLeuIleLeuIleIleAlaMetSerAsnAsnProValLysIleSerAlaGly : 373 |!.!|||||||||||||||||||||||||||!:!||||||!.!||||||||||||||| eHisGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGly 305686 : ACATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGT : 305742 374 : GlyIleValThrLeuSerLeuSerThrPheValAsn >>>> Target Intron 5 : 386 !:!!||| !||||||||||||||||||! !||| 106 bp LysValValAspLeuSerLeuSerThrPheGlyAsn++ 305743 : AAAGTAGTTGATTTATCTTTATCCACATTTGGAAACgt.................... : 305783 387 : >>>> ValLeuLysSerSerLeuGlyTyrLeuSerPheLeuArgThrValValVal : 402 |||||||||!!!||||||!.!|||||||||||||||||||||..!|||:!! ++ValLeuLysThrSerLeuAlaTyrLeuSerPheLeuArgThrThrValIle 305784 : .....agGTTCTGAAAACGTCATTAGCGTATTTAAGTTTCCTTCGGACTACCGTTATA : 305935 vulgar: gi|383850742|ref|XP_003700935.1| 7 402 . KQ414889.1 303169 305937 + 1440 M 109 327 5 0 2 I 0 934 3 0 2 M 121 363 G 2 0 M 23 69 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 37 111 5 0 2 I 0 409 3 0 2 M 52 156 5 0 2 I 0 102 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303170 305937 1440 + . gene_id 1 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303170 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303170 303496 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304868 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 2 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305780 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305780 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305781 305782 . + . intron_id 5 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305781 305886 . + . intron_id 5 KQ414889.1 exonerate:protein2genome:local splice3 305885 305886 . + . intron_id 4 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305887 305937 . + . KQ414889.1 exonerate:protein2genome:local exon 305887 305937 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303170 305937 1440 + . alignment_id 1 ; Query gi|383850742|ref|XP_003700935.1| ; Align 303170 8 327 ; Align 304435 117 363 ; Align 304798 240 69 ; Align 304940 264 99 ; Align 305101 297 111 ; Align 305625 334 156 ; Align 305887 386 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 662 Query range: 9 -> 393 Target range: 284502 -> 287243 10 : AsnTyrGluAsnAspIleIleTyrValThrLysTyrSerArgTrpIleLeuValSerI : 29 !..!::!!:!..||| !!:||| !..!:!! !:!||||||.!!||| ! !!| ThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProI 284503 : ACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGA : 284560 30 : leGlyIleTrpProAlaSerLeuLysGlySerAla<-><->LysPheLeuSerLysIl : 46 |||||:!!|||||| !|||||| ! !!!!.!! |||.!! !||| !:! leGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValVa 284561 : TTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGT : 284617 47 : eAlaIleGlyPheGlyAsnLeuValLeuPhePheAlaIleIleProPheSerLeuHis : 65 ! ! !.!!.!! !!!!:!!:!! !||| !:!::!!|||! !:!!||| ! lLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCys 284618 : CCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGC : 284674 66 : IleValLeuGluGlnLys<->AspThrValIleMetLeuLysMetLeuGlyPheLeuS : 84 ! !||||||!!::!!! ||| !! !! ! !:!!||||||:!!||| !|||| ThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuS 284675 : ACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGA : 284734 85 : erPheCysLeuIleSerValLeuLysTyrTrpAlaLeuAlaMetArgLysProLysIl : 103 ||||||||:!!!!::!!!.!:!!||||||!:: !||| ! !||| !||||| erPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIl 284735 : GTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGAT : 284791 104 : eGluArgCysIleGluLeuMetGlnThrAsp{Tr} >>>> Target Intron 1 : 114 |! !:!|||:!::!! !!!:!::.!!|||{||} 1012 bp eGlyGlnCysValLysAspIleArgAlaAsp{Tr}++ 284792 : CGGCCAATGCGTGAAGGACATTCGTGCGGAC{TG}gt..................... : 284828 115 : >>>> {p}LysGlnValGluPheArgArgAsnArgHisMetMetLeuLysTyrGlyL : 131 {|} ..! !... .........|||...:::||| ! ! !!.!! +-{p}LeuSerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaA 284829 : ....ac{G}CTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTA : 285887 132 : ysValGlyArgAspLeuThrIleLeuCysIleValPheMetTyrSerGlyGlyThrIl : 150 :!:!!||||||..!|||.!!|||!!!||| !! !|||||||||||||||||| !.! rgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePh 285888 : GAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTT : 285944 151 : eTyrHisThrIleMetGlnTyrAlaIleGlySerPheIleAspGluHisAsnArgThr : 169 !||| !|||:!:|||! !! ..!! !! ! !! ! !!|||..!||| eTyrThrThrValMetProLeuCysThrValArgThrGluIleIleAspAsnGluThr 285945 : CTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACC : 286001 170 : IleLysProLeuValTyrProThrTyrSerAlaLeuTyrAspValGlnLysIleHisV : 189 :!:!:! !!! !!.!!:!|||! !||| !!!.!||| !||| !!::! ! !! ValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProS 286002 : GTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGT : 286061 190 : alTyrValLeuValTyrThrValHisCysMetCysGlyTyrValIleTyrSerValTh : 208 !!:!! !:!!||| ! !:!!!!.|||:!!..!!.!!:!||||||||||||||||| erPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValTh 286062 : CGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCAC : 286118 209 : rAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisThrCysGlyGlnIleAsp : 227 |!.!|||||||||.!!|||||||||:!!|||!.!! !|||..!|||||||||.!! rValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArg 286119 : TGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGG : 286175 228 : IleValLeuSerArgLeuAsnGlyLeuValAspAspAsnLeuMetArgHis<-><->A : 245 |||:!!:!!!!!!:!|||:!! !|||||||||! ! !||| ! . IleLeuValThrLysLeuAspLysLeuValAspGlyValLysGlyArgLysGlyLeuS 286176 : ATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGA : 286235 246 : spAspLeuAsnGluArgLeuIleGluIleValGluHisHisLeuArgThrLeu{Ar} : 263 .! ! !.!.:!!|||||| !!!:|||:!!||||||||||||!:!! !|||{ !} erThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}+ 286236 : GCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}g : 286291 264 : >>>> Target Intron 2 >>>> {g}PheSerAlaMetMetGluThrValLeu : 272 408 bp {!}|||! !:!!...!!:||| !:!!||| + ++{y}PheIleSerGlnIleGluGlyLeuLeu 286292 : t.........................ag{T}TTTATATCGCAAATCGAGGGGCTCCTA : 286724 273 : GlnGluValCysPheLeuGluPheValGlySerThrPheMetIleCysLeuLeuGluT : 292 .!.|||:!!||||||:!!||| ! :!!|||!!!|||!!.! ||||||!!!|||! !| AsnGluIleCysPheValGluValIleGlyCysThrLeuAsnIleCysPheLeuGlyT 286725 : AACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGGGAT : 286784 293 : yrTyrThrIleVal >>>> Target Intron 3 >>>> AspTrpLysGlnSer : 301 ||||| !:!:..! 80 bp !!:|||:!!|||||| yrTyrLeuLeuThr++ ++GluTrpGluGlnSer 286785 : ATTATTTACTGACGgt.........................agGAATGGGAGCAAAGT : 286891 302 : AsnThrIleGlyLeuThrThrTyrThrLeuLeuLeuIleSerLeuThrPheAsnIleP : 321 .!.||||||||| !! !|||||| ! !||||||:!!|||!!!|||||||||:!!| GluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerPheThrPheAsnValP 286892 : GAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTT : 286951 322 : heIleLeuCysTyrIleGlyAspLeuLeuIleGluLys >>>> Target Intron : 334 ||||||||||||||||||||!!::!!||| !|||::: 74 bp heIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286952 : TCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt.................. : 286992 335 : 4 >>>> SerThrSerIleGlyThrSerSerPheGluIleAspTrpTyrArgLeuP : 350 !! !!.!:!!||| !|||!!!!:! !||||||||||||||||||| ++CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuP 286993 : .......agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGC : 287112 351 : roThrLysThrIleArgGlyLeuIleLeuIleIleAlaMetSerAsnAsnProValLy : 369 || !|||||| !!:!|||||||||||||||.!!|||:!!||||||::! !!:!!|| roGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLy 287113 : CAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAA : 287169 370 : sIleSerAlaGlyGlyIleValThrLeuSerLeuSerThrPheValAsnValLeuLys : 388 |:!!!!!|||||| !|||:!! !||||||||||||!:!||| !!:!||| !! sLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIle 287170 : ATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATC : 287226 389 : SerSerLeuGlyTyr : 393 ! !!:!|||..!||| IleAsnLeuSerTyr 287227 : ATAAATTTATCCTAT : 287243 vulgar: gi|383850742|ref|XP_003700935.1| 9 393 . KQ414889.1 284502 287243 + 662 M 31 93 G 0 6 M 31 93 G 0 3 M 42 126 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 130 390 G 0 6 M 18 54 S 0 2 5 0 2 I 0 404 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284503 287243 662 + . gene_id 2 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284503 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284503 284825 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286698 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 4 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 3 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287243 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287243 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284503 287243 662 + . alignment_id 2 ; Query gi|383850742|ref|XP_003700935.1| ; Align 284503 10 93 ; Align 284602 41 93 ; Align 284698 72 126 ; Align 285839 115 390 ; Align 286235 245 54 ; Align 286700 264 99 ; Align 286879 297 111 ; Align 287064 334 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 659 Query range: 7 -> 391 Target range: 289708 -> 292566 8 : AsnLeuAsnTyrGluAsnAspIleIleTyrValThrLysTyrSerArgTrpIleLeuV : 27 ||| !..!||||||!..|||||| !|||..! !:!!! !!!!.!||||||||| AsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleLeuL 289709 : AACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCTTGA : 289766 28 : alSerIleGlyIleTrpProAlaSerLeuLysGlySerAla<-><-><->LysPheLe : 43 ! !!||||||!!:!::||| ! !!!!!.. !!:!!::! ::! ysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgThrAl 289767 : AACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGC : 289823 44 : uSerLysIleAlaIleGlyPheGlyAsnLeuValLeuPhePheAlaIleIleProPhe : 62 !||| !:!: !||| ! ! !! !! !:!!||| ||| !|||:!!|||||| aSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValProPhe 289824 : GTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCGTTC : 289880 63 : SerLeuHisIleValLeuGluGlnLysAspThrValIleMetLeuLysMetLeuGlyP : 82 |||! !|||:!!:!!!!!....!.!!.|||! ! !! .!.:!!|||! |||||| SerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuGlyP 289881 : AGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCGGAC : 289940 83 : heLeuSerPheCysLeuIleSerValLeuLysTyrTrpAlaLeuAlaMetArgLysPr : 101 |||!!!|||||||||! !!!! !!!!!||||||!! !!!!::!|||!:! ! roLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGlySe 289941 : CGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGGTTC : 289997 102 : oLysIleGluArgCysIleGluLeuMetGlnThrAspTrpLysGlnValGluPheArg : 120 ! !|||! ||||||:!::!!! !!!::!!! !|||||||||..!:!!... !..! rAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAspGlu 289998 : AGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGACGAG : 290054 121 : ArgAsnArgHisMetMetLeuLysTyrGlyLysValGlyArgAspLeuThrIleLeuC : 140 !:!!||| !!!:||||||!:!|||! !! !:!!.!!|||:!!|||! !! !|||| AspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysLeuC 290055 : GATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAACTGT : 290114 141 : ysIleValPheMetTyrSerGlyGlyThrIleTyrHisThrIleMetGlnTyrAlaIl : 159 || :!!|||:!!|||! !|||||| ! !|||:!!|||:!!!!:! !! ! ysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPheSe 290115 : GCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTTCTC : 290171 160 : eGlySerPheIleAspGluHisAsnArgThrIleLysProLeuValTyrProThrTyr : 178 !!.! !:!::!! !||| !||||||!:!||||||..!|||||| !||| rLysLysSerValAsn---GlyAsnValThrIleArgProLeuThrTyrProGlyTyr 290172 : GAAGAAGAGCGTGAAC---GGTAACGTGACTATCAGACCTCTAACTTATCCCGGTTAC : 290225 179 : SerAlaLeuTyrAspValGlnLysIleHisValTyrValLeuValTyrThrValHisC : 198 ..!! !!!!!:!||||||||||||! !! !.!|||! !:!!|||!:! !:!!|||| GluGluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetHisC 290226 : GAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACT : 290285 199 : ysMetCysGlyTyrValIleTyrSerValThrAlaGlyAlaCysGlyLeuAlaAlaLe : 217 ||:!:! !! ! :!!! !:!:!!||| !!.!|||! !.!!|||.!!.!!:! ysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIl 290286 : GTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGAT : 290342 218 : uPheAlaThrHisThrCysGlyGlnIleAspIleValLeuSerArgLeuAsnGlyLeu : 236 !||||||||||||||||||||||||||| ! ||| ! !!!!||||||.!.! !||| ePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAspLeu 290343 : CTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTG : 290399 237 : ValAspAspAsnLeuMetArgHisAspAspLeuAsnGluArgLeuIleGluIleValG : 256 ..! ! ...:!!:!! !.!. ! ! :!!!:!!!:|||||| ! :!!|||. ThrLysArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValValValS 290400 : ACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTGTGA : 290459 257 : luHisHisLeuArgThrLeu{Ar} >>>> Target Intron 1 >>>> {g}Ph : 264 .. !|||:!!..!! !|||{!:} 655 bp {!}|| erGlyHisValGluIleLeu{Ly}++ ++{s}Ph 290460 : GCGGTCACGTGGAGATCTTG{AA}gt.........................ag{A}TT : 291138 265 : eSerAlaMetMetGluThrValLeuGlnGluValCysPheLeuGluPheValGlySer : 283 |!!! !|||!!:|||!:!!.!|||!!.|||:!!! !!!.:!!||| ! :!!! !||| eThrArgMetIleGluSerAlaLeuHisGluIlePheLeuIleGluValIleValSer 291139 : CACGAGGATGATCGAAAGCGCGTTGCATGAAATATTCTTGATAGAAGTAATAGTATCC : 291195 284 : ThrPheMetIleCysLeuLeuGluTyrTyrThrIleVal >>>> Target Intro : 297 ||| ! :!::!!||||||:!!|||||| ! !!!::!! 132 bp ThrValLeuLeuCysLeuIleGluTyrLeuLeuMetMet++ 291196 : ACTGTGTTACTATGCTTGATCGAATATCTCTTAATGATGgt................. : 291239 298 : n 2 >>>> AspTrpLysGlnSerAsnThrIleGlyLeuThrThrTyrThrLeuLeu : 312 !!:|||:!!...|||:!!:!!||||||:!! !||||||..! !||| ++GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeu 291240 : ........agGAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTC : 291414 313 : LeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuIleG : 332 |||! !|||!!!||||||||||||.!.|||!!!||||||:!!|||!!:||||||:!!! LeuThrSerPheThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuG 291415 : CTCACTTCTTTCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTG : 291474 333 : luLys >>>> Target Intron 3 >>>> SerThrSerIleGlyThrSerSer : 341 !:!! 913 bp .!!!:!..!|||!.! !:!!||| lyGln++ ++GlySerGluIleAlaHisAlaSer 291475 : GACAGgt.........................agGGTAGTGAAATCGCGCACGCTTCC : 292414 342 : PheGluIleAspTrpTyrArgLeuProThrLysThrIleArgGlyLeuIleLeuIleI : 361 !:!!!:! !!!:||||||!.!||||||! !::!! ! !|||! !:!!:!!|||:!:: TyrAspThrGluTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuValL 292415 : TACGATACAGAATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGC : 292474 362 : leAlaMetSerAsnAsnProValLysIleSerAlaGlyGlyIleValThrLeuSerLe : 380 !!|||!!:!!!!!.:!!|||:!!|||:!!!!!|||||| !||| !!..!|||||||| euAlaIleThrLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSerLe 292475 : TTGCCATAACGAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTT : 292531 381 : uSerThrPheValAsnValLeuLysSerSerLeu : 391 |!:!||||||! ! !|||! !:!!|||!.!||| uAsnThrPheGlyAlaValArgGluSerLysLeu 292532 : GAACACTTTTGGCGCTGTACGTGAATCAAAACTA : 292566 vulgar: gi|383850742|ref|XP_003700935.1| 7 391 . KQ414889.1 289708 292566 + 659 M 33 99 G 0 9 M 124 372 G 1 0 M 97 291 S 0 2 5 0 2 I 0 651 3 0 2 S 1 1 M 33 99 5 0 2 I 0 128 3 0 2 M 37 111 5 0 2 I 0 909 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289709 292566 659 + . gene_id 3 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 289709 290481 . + . KQ414889.1 exonerate:protein2genome:local exon 289709 290481 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 290482 290483 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 290482 291136 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 291135 291136 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 291137 291236 . + . KQ414889.1 exonerate:protein2genome:local exon 291137 291236 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291237 291238 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291237 291368 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 291367 291368 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292566 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292566 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289709 292566 659 + . alignment_id 3 ; Query gi|383850742|ref|XP_003700935.1| ; Align 289709 8 99 ; Align 289817 41 372 ; Align 290189 166 291 ; Align 291138 264 99 ; Align 291369 297 111 ; Align 292393 334 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 638 Query range: 9 -> 393 Target range: 278555 -> 280456 10 : AsnTyrGluAsnAspIleIleTyrValThrLysTyrSerArgTrpIleLeuValSerI : 29 !..!::.!.!..||| !!:||| !..!:!! !:!||||||.!!||| ! !!| ThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProI 278556 : ACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGA : 278613 30 : leGlyIleTrpProAlaSerLeuLysGlySerAla<-><->LysPheLeuSerLysIl : 46 |||||:!!|||||| !|||||| ! !!!!.!! |||.!! !||| !:! leGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValVa 278614 : TTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGT : 278670 47 : eAlaIleGlyPheGlyAsnLeuValLeuPhePheAlaIleIleProPheSerLeuHis : 65 ! ! !.!!.!! !!!!:!!:!! !||| !:!::!!|||! !:!!||| ! lLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCys 278671 : CCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGC : 278727 66 : IleValLeuGluGlnLys<->AspThrValIleMetLeuLysMetLeuGlyPheLeuS : 84 ! !||||||!!::!!! ||| !! !! ! !:!!||||||:!!||| !|||| ThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuS 278728 : ACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAA : 278787 85 : erPheCysLeuIleSerValLeuLysTyrTrpAlaLeuAlaMetArgLysProLysIl : 103 |||||||| !!!::!!..!:!!||||||!:: !||| ! !||| !||||| erPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIl 278788 : GTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGAT : 278844 104 : eGluArgCysIleGluLeuMetGlnThrAspTrpLys<->GlnValGluPheArgArg : 121 |! !:!|||:!:.!. !!!:!::|||||||||... !:!!..!!:!|||::: eGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGln 278845 : CGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaa : 278901 122 : <-><->AsnArgHisMetMetLeuLysTyrGlyLysValGlyArgAspLeuThrIleL : 139 ...|||...:::||| ! ! !!.!!:!:!!||||||..!|||.!!|||! GluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIleP 278902 : gaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCT : 278961 140 : euCysIleValPheMetTyrSerGlyGlyThrIleTyrHisThrIleMetGlnTyrAl : 158 !! !! !! !||||||||||||||||||..!.!!||| !.!!:!:|||! !! heSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPh 278962 : TCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTT : 279018 159 : aIleGlySerPheIleAspGluHisAsnArgThrIleLysProLeuValTyrProThr : 177 ! !! ! !! ! !!|||..!|||:!:!:! !!! !!.!!:!|||! ! eAlaValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIle 279019 : CGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATC : 279075 178 : TyrSerAlaLeuTyrAspValGlnLysIleHisValTyrValLeuValTyrThrValH : 197 ||| !!!.!||| !||| !!::! ! !! !!:!! !:!!||| ! !:!!! TyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetG 279076 : TATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGC : 279135 198 : isCysMetCysGlyTyrValIleTyrSerValThrAlaGlyAlaCysGlyLeuAlaAl : 216 !.|||:!!..!!.!!:!|||:!!||||||||||||!.!|||||||||.!!||| !|| lnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAl 279136 : AATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGC : 279192 217 : aLeuPheAlaThrHisThrCysGlyGlnIleAspIleValLeuSerArgLeuAsnGly : 235 |:!!|||!.!! !|||..!|||||||||.!! |||:!!:!!!!!!:!|||:!! ! aValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLys 279193 : TGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAG : 279249 236 : LeuValAspAspAsnLeuMetArgHis<-><->AspAspLeuAsnGluArgLeuIleG : 253 |||:!!|||! ! !||| ! ..! ! !.!.:!!|||||| !! LeuIleAspGlyValLysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyA 279250 : CTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAG : 279309 254 : luIleValGluHisHisLeuArgThrLeu{Ar} >>>> Target Intron 1 >> : 263 !:|||:!!||||||||||||!:!! !|||{ !} 571 bp spIleIleGluHisHisLeuLysIleLeu{Gl}++ 279310 : ATATCATCGAGCATCATCTGAAGATACTG{GG}gt....................... : 279343 264 : >> {g}PheSerAlaMetMetGluThrValLeuGlnGluValCysPheLeuGluPhe : 280 {!}|||! !:!!...!!:||| !:!!|||.!.|||:!!||||||:!!||| ! ++{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluVal 279344 : ..ag{T}TTTATATCGCAAATCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTG : 279961 281 : ValGlySerThrPheMetIleCysLeuLeuGluTyrTyrThrIleVal >>>> Tar : 297 :!!|||!!!|||!!.! ||||||!!!||| !|||||| !:!!..! IleGlyCysThrLeuAsnIleCysPheLeuThrTyrTyrLeuLeuThr++ 279962 : ATTGGTTGCACGTTGAACATATGCTTTTTGACATATTATTTACTCACGgt........ : 280014 298 : get Intron 2 >>>> AspTrpLysGlnSerAsnThrIleGlyLeuThrThrTyr : 309 80 bp !!:|||:!!|||!:!:!!.!!|||||| ! !|||||| ++GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyr 280015 : .................agGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTAT : 280128 310 : ThrLeuLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyAspL : 329 !:!!!!!|||||||||||||||||||||:!!|||||||||||||||||||||!!:: LeuMetPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluI 280129 : TTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAA : 280188 330 : euLeuIleGluLys >>>> Target Intron 3 >>>> SerThrSerIleGly : 338 !!||| !|||::: 74 bp !!! !!.!:!!||| leLeuSerGluGln++ ++CysLeuLysValGly 280189 : TTCTCTCCGAACaggt.........................agTGCTTAAAAGTCGGC : 280289 339 : ThrSerSerPheGluIleAspTrpTyrArgLeuProThrLysThrIleArgGlyLeuI : 358 ..!|||!!!!:! !||||||||||||||||||||| !|||! ! !!:!||||||| ValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuI 280290 : GTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGA : 280349 359 : leLeuIleIleAlaMetSerAsnAsnProValLysIleSerAlaGlyGlyIleValTh : 377 ||||||||.!!|||:!!||||||::! !!:!!|||:!!!!!|||||| !|||:!! leLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAs 280350 : TACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGA : 280406 378 : rLeuSerLeuSerThrPheValAsnValLeuLysSerSerLeuGlyTyr : 393 !||||||||||||!:!||| !!:!||| !! ! !!:!|||..!||| pLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 280407 : TCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 280456 vulgar: gi|383850742|ref|XP_003700935.1| 9 393 . KQ414889.1 278555 280456 + 638 M 31 93 G 0 6 M 31 93 G 0 3 M 44 132 G 0 3 M 6 18 G 0 6 M 123 369 G 0 6 M 18 54 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278556 280456 638 + . gene_id 4 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278556 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278556 279340 . + . insertions 24 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280456 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278556 280456 638 + . alignment_id 4 ; Query gi|383850742|ref|XP_003700935.1| ; Align 278556 10 93 ; Align 278655 41 93 ; Align 278751 72 132 ; Align 278886 116 18 ; Align 278910 122 369 ; Align 279285 245 54 ; Align 279913 264 99 ; Align 280092 297 111 ; Align 280277 334 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 603 Query range: 3 -> 386 Target range: 226891 -> 230406 4 : SerLeuGlnProAsnLeuAsnTyrGluAsnAspIleIleTyrValThrLysTyrSerA : 23 |||||| ! !!.!. !:!!|||:!!.!. !!:!:! ! !! !:!!! !:!| SerLeuAlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnA 226892 : TCTCTCGCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATC : 226949 24 : rgTrpIleLeuValSerIleGlyIleTrpProAlaSerLeuLysGlySer<-><->Al : 40 |||||:!:||| ! !!:!!||||||||||||:!!|||! !|||.!!||| !. rgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGl 226950 : GTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGG : 227006 41 : aLysPheLeuSerLysIleAlaIleGlyPheGlyAsnLeuValLeuPhePheAlaIle : 59 !!:!! !!!!||| !:!: ! ! !.!! !! !! !:!!:!! !|||! !:!: yArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeu 227007 : AAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTG : 227063 60 : IleProPheSerLeuHisIleValLeuGluGlnLysAspThrValIleMetLeuLysM : 79 :!! !! !.!!|||:!!:!:||||||||| !|||! !.!! !! !! !||||||| ValSerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysM 227064 : GTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAA : 227123 80 : etLeuGlyPheLeuSerPheCysLeuIleSerValLeuLysTyrTrpAlaLeuAlaMe : 98 ||:!!||| :!!||||||! ! !!!:|||:!!|||||||||! !|||.!!.! etIleGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPh 227124 : TGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTT : 227180 99 : tArgLysProLysIleGluArgCysIleGluLeuMetGlnThrAspTrpLysGlnVal : 117 .!.!:!! ! ! ||| ..!|||:!!|||! !!!::!! !|||||||||.!.:!! eHisGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIle 227181 : CCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATC : 227237 118 : GluPheArgArgAsnArgHisMetMetLeuLysTyrGlyLysValGlyArgAspLeuT : 137 ..!!:!! !..!:!!|||:!!:!!|||:!!! !|||!.! ! !|||||| ! |||! ArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuI 227238 : AGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGA : 227297 138 : hrIleLeuCysIleValPheMetTyrSerGlyGlyThrIleTyrHisThrIleMetGl : 156 !! !:!!|||! !!|||:!:!:!|||... ......::::::! !:!!:!:! leThrIleCysThrPhePheValPheSerSerPheValPhePheTyrIleValValPr 227298 : TCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACC : 227354 157 : nTyrAlaIleGlySerPheIleAspGluHis<->AsnArgThrIleLysProLeuVal : 174 ! ! !|||||| !! ! ||| !! |||!.!!:! !! ! !:!! ! oIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetPro 227355 : TATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCG : 227411 175 : TyrProThrTyrSerAlaLeuTyrAspValGlnLysIleHisValTyrValLeuValT : 194 !:!||| ! !.! !:!! !||||||!:: ! ! !! ! !! !!! !:!! !!! PheProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIlePheP 227412 : TTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCT : 227471 195 : yrThrValHisCysMetCysGlyTyrValIleTyrSerValThrAlaGlyAlaCysGl : 213 :!:!!|||!!.! !:!: ||| !|||:!::!!.!!||||||:!!!.!||||||.! heSerValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSe 227472 : TTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAG : 227528 214 : yLeuAlaAlaLeuPheAlaThrHisThrCysGlyGlnIleAspIleValLeuSerArg : 232 !:!!|||||||||.!!|||..!|||.!!|||||||||!!:!!::!::!!:!!||| !! rMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrp 227529 : TATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGG : 227585 233 : LeuAsnGlyLeuValAspAspAsnLeuMetArgHisAspAspLeuAsnGluArgLeuI : 252 |||... !|||:!!|||! !!.. ! ! ! ! ! |||:!!!!:|||:!! LeuGlyHisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAspAspArgIleA 227586 : CTGGGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCG : 227645 253 : leGluIleValGluHisHisLeuArgThrLeu{Ar} >>>> Target Intron 1 : 263 !...|||||| ||||||:!!|||! !|||{!.} 396 bp laSerIleValThrHisHisValArgIleLeu{As}++ 227646 : CTAGCATCGTCACTCACCACGTTCGAATATTG{AA}gt.................... : 227682 264 : >>>> {g}PheSerAlaMetMetGluThrValLeuGlnGluValCysPheLeuGlu : 279 {!}||| !|||:!:!!:|||! !..!:!!|||:!!:!!..!|||:!!||| ++{n}PheLeuAlaLeuIleGluLysThrMetGlnGlnIleAlaPheValGlu 227683 : .....ag{C}TTTCTGGCCCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAA : 228122 280 : PheValGlySerThrPheMetIleCysLeuLeuGluTyrTyrThrIleVal >>>> : 297 |||:!!|||!!!|||.!.!!::!:||||||:!!|||||||||! !|||..! PheLeuGlyCysThrIleIleLeuCysLeuIleGluTyrTyrIleIleThr++ 228123 : TTTTTAGGGTGTACAATAATTCTGTGCCTCATCGAGTATTACATCATAACGgt..... : 228178 298 : Target Intron 2 >>>> AspTrpLysGlnSerAsnThrIleGlyLeuThrThr : 308 72 bp !!:|||!!.! !!.!.!. !! ! ! !..!||| ++GluTrpAsnProLysGluLeuThrPheAlaValThr 228179 : ....................agGAATGGAATCCGAAAGAGTTAACATTTGCTGTAACT : 228281 309 : TyrThrLeuLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyA : 328 |||:!! !||||||:!!|||!!!||||||||||||||||||...||||||||||||! TyrSerAlaLeuLeuLeuSerPheThrPheAsnIlePheIlePheCysTyrIleGlyG 228282 : TACTCAGCGTTACTTTTATCCTTTAccttcaatattttcatattttgttaTATAGGAG : 228341 329 : spLeuLeuIleGluLys >>>> Target Intron 3 >>>> SerThrSerIle : 337 !::!!:!! !||| ! 1889 bp !!!! !!.!:!! luIleValAlaGluHis++ ++CysArgLysVal 228342 : AAATTGTTGCCGAACACgt.........................agTGCAGAAAAGTC : 230257 338 : GlyThrSerSerPheGluIleAspTrpTyrArgLeuProThrLysThrIleArgGlyL : 357 ||| !!.!|||!:! !|||!!:|||||||||||| !! !!!.! !! ! ! !!! GlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyAsnLysLysLeuCysC 230258 : GGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAAACAAGAAGCTCTGTT : 230317 358 : euIleLeuIleIleAlaMetSerAsnAsnProValLysIleSerAlaGlyGlyIleVa : 376 !|||||||||||||||||||||||| ! !!..!|||.!!!!!||||||..!!!:|| ysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheThrAlaGlyAsnMetVa 230318 : GCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTACAGCAGGAAACATGGT : 230374 377 : lThrLeuSerLeuSerThrPheValAsnVal : 386 | !||||||:!!!:!|||||| !:!!||| lGluLeuSerValAsnThrPheSerAspVal 230375 : TGAATTATCCGTAAACACTTTCAGCGACGTA : 230406 vulgar: gi|383850742|ref|XP_003700935.1| 3 386 . KQ414889.1 226891 230406 + 603 M 36 108 G 0 6 M 127 381 G 0 3 M 96 288 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226892 230406 603 + . gene_id 5 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226892 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226892 227679 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230406 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230406 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226892 230406 603 + . alignment_id 5 ; Query gi|383850742|ref|XP_003700935.1| ; Align 226892 4 108 ; Align 227006 40 381 ; Align 227390 167 288 ; Align 228077 264 99 ; Align 228248 297 111 ; Align 230248 334 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 510 Query range: 7 -> 386 Target range: 299662 -> 302036 8 : AsnLeuAsnTyrGluAsnAspIleIleTyrValThrLysTyrSerArgTrpIleLeuV : 27 |||! !:!!|||:!!||||||||| !|||..! !:!! !!!!:!|||:!:||| AsnTyrHisTyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuL 299663 : AATTACCATTACCAAAATGACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGA : 299720 28 : alSerIleGlyIleTrpProAlaSerLeuLysGlySerAlaLysPheLeuSerLysIl : 46 ! !!||||||:!!|||! ! ! ! !:!! !!|||::!|||.!. ! ! :! ysProIleGlyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuVa 299721 : AACCTATCGGAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGT : 299777 47 : eAlaIleGlyPheGlyAsnLeuVal<-><-><->LeuPhePheAlaIleIleProPhe : 62 !:!!|||! !.!! !!..:!! ! ||||||||| !:!!:!:|||! ! lSerIleValLeuMetThrIleCysPheSerSerLeuPhePheIleValLeuProSer 299778 : CTCGATCGTTCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCC : 299834 63 : SerLeuHisIleValLeuGluGlnLysAspThrValIleMetLeuLysMetLeuGlyP : 82 .!!! !:!!||| !!!!!! !:!!|||..!! ! !:!!! !:!!|||:!:!!!||| GlyHisTyrIlePhePheAlaGluLysSerIleHisValLysValLysValPheGlyP 299835 : GGTCATTACATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTC : 299894 83 : heLeuSerPheCysLeuIleSerValLeuLysTyrTrpAlaLeuAlaMetArgLysPr : 101 :!!.!!||||||||| !|||:!!:!!||||||!! !|||..!:!!!.! roValGlyPheCysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGl 299895 : CGGTTGGTTTTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGG : 299951 102 : oLysIleGluArgCysIleGluLeuMetGlnThrAspTrpLysGlnValGluPheArg : 120 ! !.!!||||||||||||:!!! !:!::!!! !||| ! yAlaPheGluArgCysIleGlnHisValGluArgAsp---UnkUnkUnkUnkUnkUnk 299952 : CGCGTTCGAACGATGCATCCAACACGTCGAGAGAGAC---NNNNNNNNNNNNNNNNTT : 300005 121 : Arg--AsnArgHisMetMetLeuLysTyrGlyLysValGlyArgAspLeuThrIleLe : 139 |||##:!!||| !!:||||||!:!|||! !! :!!.!!|||:!!||||||! !:! Arg##HisArgThrIleMetLeuArgTyrValThrMetSerArgAsnLeuThrThrVa 300006 : CGAATCATCGTACGATCATGTTGAGATACGTGACTATGAGCAGAAATCTGACGACCGT : 300064 140 : uCysIleValPheMetTyrSerGlyGlyThrIleTyrHisThrIleMetGlnTyrAla : 158 !||| !||||||:!:|||:!!||||||! ! |||||||||:!:||||||!:! ! lCysAlaValPheLeuTyrAlaGlyGlyMetSerTyrHisThrValMetGlnPheLeu 300065 : GTGCGCCGTGTTTCTTTACGCAGGTGGTATGTCGTATCACACGGTGATGCAGTTCTTA : 300121 159 : IleGlySerPheIleAspGluHisAsnArgThrIleLys{P} >>>> Target In : 172 !..! ! !..!||| ! !! ! |||{ } 42 b SerLysAspArgSerSerGluPheLeuSerArgGluLys{T}+- 300122 : TCGAAGGACAGAAGCAGCGAGTTCCTGTCGAGGGAGAAA{A}gc.............. : 300166 173 : tron 1 >>>> {ro}LeuValTyrProThrTyrSerAlaLeuTyrAspValGlnLy : 186 p {!!}|||!.!|||||| !|||..! !!!! !|||..!|||! +-{hr}LeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnTh 300167 : ...........ac{CG}TTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAAC : 300247 187 : sIleHisValTyrValLeuValTyrThrValHisCysMetCysGlyTyrValIleTyr : 205 ! !! !..!|||! :::|||::: ||||||.!....!.! :!!!!:||| rSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTyr 300248 : CAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTAC : 300304 206 : SerValThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisThrCysGlyG : 225 !:!||||||.!!!.!|||! !.!!|||||||||:!!|||!.!||||||! !||||||| AsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGlyG 300305 : AACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGAC : 300364 226 : lnIleAspIleValLeuSerArgLeuAsnGlyLeuValAspAspAsnLeuMetArgHi : 244 |||||.!.||| !:!!:!!||||||.!.! !|||||| !!:!.. ! ..! ! lnIleGlnIleGlnMetAlaArgLeuGluAspLeuVal---GluArgThrGlyGluLy 300365 : AGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTG---GAGAGGACGGGAGAGAA : 300418 245 : sAspAspLeuAsnGluArgLeuIleGluIleValGluHisHisLeuArgThrLeu{Ar : 263 |||||| ! !!!:! !|||:!!! ||||||..! !!|||:!!!:!..!|||{|| sAspAspGlyProAspProLeuValValIleValArgAspHisValLysValLeu{Ar 300419 : GGACGACGGTCCTGATCCTTTGGTCGTTATCGTTCGAGATCACGTGAAGGTTTTA{AG : 300475 264 : } >>>> Target Intron 2 >>>> {g}PheSerAlaMetMetGluThrValL : 272 } 140 bp {|}|||:!! !! :!:||| !..!| }++ ++{g}PheAlaLysAsnValGluGluThrL 300476 : }gt.........................ag{A}TTTGCAAAGAACGTTGAGGAAACTT : 300642 273 : euGlnGluValCysPheLeuGluPheValGlySerThrPheMetIleCysLeuLeuGl : 291 ||!::!!: !!|||!!.:!!|||.!! !!! !||||||.!.!!::!:||||||||||| euArgAspPheCysLeuValGluIlePheGluSerThrLeuIleLeuCysLeuLeuGl 300643 : TGCGTGACTTCTGCTTAGTGGAAATCTTCGAGTCCACGCTGATTTTGTGTTTGCTCGA : 300699 292 : uTyrTyrThrIleVal >>>> Target Intron 3 >>>> AspTrpLysGlnS : 301 ||||||| !:!:||| 970 bp !!:|||:!!.!.| uTyrTyrCysLeuVal++ ++GluTrpGlnAsnS 300700 : ATACTACTGTTTGGTGgt.........................agGAATGGCAAAATA : 301699 302 : erAsnThrIleGlyLeuThrThrTyrThrLeuLeuLeuIleSerLeuThrPheAsn : 320 ||:!!||||||!.!:!! !|||!:! ! !||||||! |||!!!||||||||| erAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAsn-+ 301700 : GCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATat : 301756 321 : >>>> Target Intron 4 >>>> IlePheIleLeuCysTyrIleGlyAspLeuL : 330 80 bp :!!||| !! !! !! ! !.!! !:!! +-ValPheProArgTyrLeuSerSerPheIleG 301757 : .........................atGTATTTCCACGGTATTTAAGCAGCTTTATTG : 301866 331 : euIleGluLysSerThrSerIleGlyThrSerSerPheGluIleAspTrpTyrArgLe : 349 ! !!!: !!!!!!:!..!||||||:!!:!!|||!:!|||||||||||||||!.!|| lyArgAsp***CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLe 301867 : GTCGTGATTAGTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTT : 301923 350 : uProThrLysThrIleArgGlyLeuIleLeuIleIleAlaMetSerAsnAsnProVal : 368 ||||.!!|||! ! ! !! !|||||||||:!!! !!.!!!:|||.!. !!||| ! uProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProPro 301924 : ACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCG : 301980 369 : LysIleSerAlaGlyGlyIleValThrLeuSerLeuSerThrPheValAsnVal : 386 |||:!!!!!|||||| !|||:!! !|||||||||!:!|||||| !::!||| LysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301981 : AAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: gi|383850742|ref|XP_003700935.1| 7 386 . KQ414889.1 299662 302036 + 510 M 47 141 G 0 9 M 59 177 G 1 0 M 7 21 F 0 2 M 50 150 S 0 1 5 0 2 I 0 38 3 0 2 S 1 2 M 65 195 G 1 0 M 24 72 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 33 99 5 0 2 I 0 966 3 0 2 M 23 69 5 0 2 I 0 76 3 0 2 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299663 302036 510 + . gene_id 6 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 299663 300163 . + . KQ414889.1 exonerate:protein2genome:local exon 299663 300163 . + . insertions 9 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local splice5 300164 300165 . + . intron_id 1 ; splice_site "GC" KQ414889.1 exonerate:protein2genome:local intron 300164 300205 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300204 300205 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 300206 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300206 300476 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 300616 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 300615 300616 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300617 300716 . + . KQ414889.1 exonerate:protein2genome:local exon 300617 300716 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300717 300718 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300717 301686 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 301685 301686 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301687 301755 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301755 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301756 301757 . + . intron_id 4 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 301756 301835 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 301834 301835 . + . intron_id 3 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local cds 301836 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301836 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299663 302036 510 + . alignment_id 6 ; Query gi|383850742|ref|XP_003700935.1| ; Align 299663 8 141 ; Align 299813 55 177 ; Align 299990 115 21 ; Align 300013 122 150 ; Align 300208 173 195 ; Align 300403 239 72 ; Align 300618 264 99 ; Align 301687 297 69 ; Align 301836 320 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 404 Query range: 0 -> 333 Target range: 232411 -> 234914 1 : MetAsnGlnSerLeuGlnProAsnLeuAsnTyrGluAsnAspIleIleTyrValThrL : 20 ||| .!.|||! !!:: !!..|||||| ! !...||| ! ||| !! !: MetLeuAspSerSerArgAspThrLeuAsnAlaThrArgAspTyrGluTyrSerIleG 232412 : ATGCTGGACTCGTCCCGCGACACGTTGAACGCTACGCGAGACTACGAGTACAGCATCC : 232469 21 : ysTyrSerArgTrpIleLeuValSerIleGlyIleTrpProAlaSerLeuLysGlySe : 39 !! !:!||||||.!!|||..! !!!!:||| !|||||| ! ! !:!! !|| lnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgValThrGluThrSe 232470 : AGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTGTTACAGAGACCTC : 232526 40 : r<-><->AlaLysPheLeuSerLysIleAlaIleGlyPheGlyAsnLeuValLeuPhe : 56 | !:!!.!.|||:!!|||:!: !! ! ! ! !!:!!! !:!!:!!.!! rArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHisSerLeuMetIle 232527 : GAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCATTCTCTGATGATC : 232583 57 : PheAlaIleIleProPheSerLeuHisIleValLeuGluGlnLysAspThrValIleM : 76 ! !:!!|||:!!|||! !! !||| !|||:!!!!!|||.!.! !..! !! ! !! SerSerIleValProCysIleLeuPheIleLeuPheGluAspThrSerLeuGluGluA 232584 : TCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACGAGCCTAGAGGAAA : 232643 77 : etLeuLysMetLeuGlyPheLeuSerPheCysLeuIleSerValLeuLysTyrTrpAl : 95 !:!!||| :!!||| !:!!||| !! !|||!!:.!!! !|||!!.|||!! .. rgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluLeuAsnTyrCysCy 232644 : GGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAATTGAATTATTGCTG : 232700 96 : aLeuAlaMetArgLysProLysIleGluArgCysIleGluLeuMetGlnThrAspTrp : 114 !||| ! !:! ! ! ! ||| !|||:!:|||! !:!!:!! !|||||| sLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnValLysGlnAspTrp 232701 : CTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGTGAAACAGGACTGG : 232757 115 : LysGlnValGluPheArgArgAsnArgHisMetMetLeuLysTyrGlyLysValGlyA : 134 ::!.!.|||:!! ! ! !:!!||| !!:!!||||||||| !!!.!|||:!!|||| ArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsnAlaLysLeuGlyA 232758 : CGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAACGCGAAACTTGGAC : 232817 135 : rgAspLeuThrIleLeuCysIleValPheMetTyrSerGlyGlyThrIleTyrHisTh : 153 ||...:!!.!! !:!!..! !!! !|||:!!!!!|||! ! ! ! !!.!.! rgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValGlySerAspGluIl 232818 : GTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCGGCTCCGACGAAAT : 232874 154 : rIleMetGlnTyrAlaIleGlySerPhe<->IleAspGluHisAsnArgThrIleLys : 171 !:!!! ! ! !!!:.!!!!!||| :!:! .!..!.!:! !:!!!!: ! eValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSerTyrSerMetTyr 232875 : AGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAGTTACTCGATGTAC : 232931 172 : ProLeuValTyrProThrTyrSerAlaLeuTyrAspValGlnLysIleHisValTyrV : 191 |||||| !! ! !! !|||!!! !||| |||..!::! ! !! ..! !!! ProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPheSerProThrAsnG 232932 : CCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTCAGTCCGACGAACG : 232991 192 : alLeuValTyrThrValHisCysMetCysGlyTyrValIleTyrSerValThrAlaGl : 210 !:!!:!!!:!..!:!!!!.|||:!:! !|||!:!:!!:!: !!|||||||||!.!|| luIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnSerValThrValGl 232992 : AGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGG : 233048 211 : yAlaCysGlyLeuAlaAlaLeuPheAlaThrHisThrCysGlyGlnIleAspIleVal : 229 |||||||||||||!.!|||:!!.!.|||! !|||.!!|||||||||:!::!!:!:||| yAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGlnLeuAsnValVal 233049 : AGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACAGCTGAACGTGGTG : 233105 230 : LeuSerArgLeuAsnGlyLeuValAspAspAsnLeuMetArgHisAspAspLeuAsnG : 249 :!!|||!:!|||:!!! !|||||||||! !!. !..!..!.!. ! ! !.!.. MetSerLysLeuAspAspLeuValAspAlaLysGlyGlnGluGluArgValAlaGlnA 233106 : ATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAGGAGGAGAGAGTCGCGCAGA : 233165 250 : luArgLeuIleGluIleValGluHisHisLeuArgThrLeuArgPheSerAla >>> : 267 .!!:!||| ! ||||||||||||||||||||||||||||||!:!! !:!! rgLysLeuGlyPheIleValGluHisHisLeuArgThrLeuArgTyrLeuSer++ 233166 : GGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTAAGGTATTTGTCTgt... : 233221 268 : > Target Intron 1 >>>> MetMetGluThrValLeuGlnGluValCysPheL : 278 1315 bp ! !!:|||!.!|||:!!.!. !:!!|||.!.: -+AsnIleGluAsnValMetAsnLeuIleCysLeuV 233222 : ......................ggAATATAGAGAACGTTATGAACCTAATATGCCTGG : 234567 279 : euGluPheValGlySerThrPheMetIleCysLeuLeuGluTyr{Ty} >>>> Tar : 293 !!|||!!.||||||!!!|||!!.! !!:|||:!!|||||||||{!!} alGluLeuValGlyCysThrLeuAsnMetCysMetLeuGluTyr{**}-+ 234568 : TTGAGTTGGTAGGATGCACGTTGAACATGTGCATGCTCGAGTAT{TA}tt........ : 234616 294 : get Intron 2 >>>> {r}ThrIleValAspTrpLysGlnSerAsnThrIleGly : 305 180 bp { } !|||:!! !! :!!:!!!..::: +-{*}CysIleLeuThrSerGlnGluLysSerLysGluLys 234617 : .................aa{A}TGTATTTTAACTTCTCAGGAAAAgtcgaaggaaaaa : 234828 306 : LeuThrThrTyrThrLeuLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysT : 325 |||.!!:!!|||..!:!!:!!! !:!:|||:!!||||||||||||||||||...|||| LeuAlaSerTyrValIleValTyrValSerMetThrPheAsnIlePheIlePheCysT 234829 : ttagCTTCATACGTCATCGTGTACGTGTCCATGACATTtaatatattcatattttgtt : 234888 326 : yrIleGlyAspLeuLeuIleGluLys : 333 ||||||||!!: !|||! !|||:!! yrIleGlyGluThrLeuThrGluGln 234889 : ACATCGGAGAGACGCTTACAGAGCAG : 234914 vulgar: gi|383850742|ref|XP_003700935.1| 0 333 . KQ414889.1 232411 234914 + 404 M 39 117 G 0 6 M 123 369 G 0 3 M 104 312 5 0 2 I 0 1311 3 0 2 M 26 78 S 0 2 5 0 2 I 0 176 3 0 2 S 1 1 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232412 234914 404 + . gene_id 7 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232412 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232412 233218 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 233219 233220 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233219 234533 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234532 234533 . + . intron_id 0 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 234534 234613 . + . KQ414889.1 exonerate:protein2genome:local exon 234534 234613 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234614 234615 . + . intron_id 2 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 234614 234793 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234792 234793 . + . intron_id 1 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 234794 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234794 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232412 234914 404 + . alignment_id 7 ; Query gi|383850742|ref|XP_003700935.1| ; Align 232412 1 117 ; Align 232535 40 369 ; Align 232907 163 312 ; Align 234534 267 78 ; Align 234795 294 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 398 Query range: 1 -> 362 Target range: 259727 -> 262012 2 : AsnGlnSerLeuGlnProAsnLeuAsnTyrGluAsnAspIleIleTyrValThrLysT : 21 |||:!!|||:!! !.!. !!:!!:! !:! !!! ! !||| ! !:!!! AsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerLeuGlnP 259728 : AACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCCAAT : 259785 22 : yrSerArgTrpIleLeuValSerIleGlyIleTrpProAlaSerLeuLysGlySer<- : 40 :!!:!||||||.!!||| ! !!|||||| !|||||| !!|||! !... !!!! heAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerThrThrAr 259786 : TTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCACGACCAG : 259842 41 : ><->AlaLysPheLeuSerLysIleAlaIleGlyPheGlyAsnLeuValLeuPhePhe : 57 ! !|||.!!:!!||| ||| !||| !.!! !! !! !..!:!!.!. !! gLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIleLeuVal 259843 : ACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATACTGGTC : 259899 58 : AlaIleIleProPheSerLeuHisIleValLeuGluGlnLysAspThrValIleMetL : 77 .!!:!:||||||! ! !||||||!!::!!||||||:!!:!!..! ! !!!:! ThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrMetLysT 259900 : ACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAA : 259959 78 : euLysMetLeuGlyPheLeuSerPheCysLeuIleSerValLeuLysTyrTrpAlaLe : 96 !|||:!!|||||| !|||!!! !!! !!!:!!.!! !:!!!!.||| .!!|| hrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrThrThrLe 259960 : CGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTT : 260016 97 : uAlaMetArgLysProLysIleGluArgCysIleGluLeuMetGlnThrAspTrpLys : 115 | !:!!||| ! ! ||| !!!|||:!:|||! !:!!:!!!.!||||||!:! uLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAspTrpArg 260017 : GTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGA : 260073 116 : GlnValGluPheArgArgAsnArgHisMetMetLeuLysTyrGlyLysValGlyArgA : 135 :!! ! ..!!:!:!!!:!:!!:!!||||||!:!|||!.!||| !!|||||| IleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgT 260074 : ATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGAT : 260133 136 : spLeuThrIleLeuCysIleValPheMetTyrSerGlyGlyThrIleTyrHisThrIl : 154 !!:!!.!! !! !||| !.!|||:!! ! .!!|||! ! ! !!:! ! !:! yrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCysLeuVa 260134 : ACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGT : 260190 155 : eMetGlnTyrAlaIleGlySerPhe<->IleAspGluHisAsnArgThrIleLysPro : 172 !! ! !! ::!! !! ! !.!. :!:! .!..!.!..|||! !:!! ! ! ! lThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleValHisLeu 260191 : CACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTG : 260247 173 : LeuValTyrProThrTyrSerAlaLeuTyrAspValGlnLysIleHisValTyrValL : 192 ||| !! ! !!..!|||!.!! !||| :!!|||.!. ! ! !! !:!! !!! !: LeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetAsnGluI 260248 : TTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGA : 260307 193 : euValTyrThrValHisCysMetCysGlyTyrValIleTyrSerValThrAlaGlyAl : 211 !!||| !..!|||!!.! !:!:! |||!:!:!!:!: !!||| !|||!.!||| leValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrValGlyIl 260308 : TTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAAT : 260364 212 : aCysGlyLeuAlaAlaLeuPheAlaThrHisThrCysGlyGlnIleAspIleValLeu : 230 !! !.!!|||||||||:!!.!..!!.!!|||.!!|||||||||:!::!!:!::!!:!! ePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMet 260365 : CTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATG : 260421 231 : SerArgLeuAsnGlyLeuValAspAspAsnLeuMetArgHisAspAspLeuAsnGluA : 250 ..! !!:!!!..! !!!!||||||!!:::: !! ||| ! ! ! ! ! ! GluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaProPheL 260422 : GAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTCCTTTCA : 260481 251 : rgLeuIle<->GluIleValGluHisHisLeuArgThrLeuArgPheSerAlaMetMe : 268 :! !||| ! !|||||||||||||||||||||.!!|||! !! ..! !.!. ysGluIleGlyValIleValGluHisHisLeuArgAlaLeuThr***AspLeuPheAs 260482 : AGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTCACGTAAGATTTGTTTGA : 260538 269 : tGluThrValLeuGlnGluValCysPheLeuGluPheValGlySerThrPheMetIle : 287 ||| !!:!!!:! !! ! !|||:!! ||||||||||||...::: pIleThrPheValArg***ArgIlePheIleIleThrValGlySerThrIleIle*** 260539 : TATTACTTTTGTACGATAAAGGATTTTTATAATTACGGTAGGATCTactataatttga : 260595 288 : CysLeu{Le} >>>> Target Intron 1 >>>> {u}GluTyrTyrThrIleV : 296 |||{:!} 1109 bp {!} :::::: ::: LysLeu{Il}++ -+{e}TyrPhePheLeuLeuG 260596 : aaatta{at}gt.........................tg{a}tatttctttcttttgc : 261731 297 : alAspTrpLysGlnSerAsnThrIleGlyLeuThrThrTyrThrLeuLeuLeuIleSe : 315 !!:||| :!!..!:!!! ! !..!|||:!!|||||| !:!!:!!||||||:! lnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheMetMetLeuIleAl 261732 : agGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCATGATGCTGATAGC : 261788 316 : rLeuThrPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuIleGluLys > : 334 !:!! !||||||:!!||||||:!!||||||||||||!!::!!|||! |||:!! aIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLeuThrGluGln++ 261789 : GATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACTAACGGAACAGgt. : 261847 335 : >>> Target Intron 2 >>>> SerThrSerIleGlyThrSerSerPheGluIl : 344 81 bp !!!:!!!.!:!!||| ! ! !!:! !! ++CysSerLysValGlyAspValValTyrMetTh 261848 : ........................agTGCTCGAAAGTTGGTGACGTTGTTTACATGAC : 261956 345 : eAspTrpTyrArgLeuProThrLysThrIleArgGlyLeuIleLeuIleIleAla : 362 !:!!|||||| !|||||| !|||!:!|||! !! !|||||||||||||||||| rAsnTrpTyrTyrLeuProAspLysSerIleLeuAspLeuIleLeuIleIleAla 261957 : AAACTGGTATTATTTACCTGATAAAAGTATCCTTGATTTGATTTTGATCATTGCA : 262012 vulgar: gi|383850742|ref|XP_003700935.1| 1 362 . KQ414889.1 259727 262012 + 398 M 38 114 G 0 6 M 123 369 G 0 3 M 90 270 G 0 3 M 37 111 S 0 2 5 0 2 I 0 1105 3 0 2 S 1 1 M 43 129 5 0 2 I 0 77 3 0 2 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259728 262012 398 + . gene_id 8 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259728 260605 . + . KQ414889.1 exonerate:protein2genome:local exon 259728 260605 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260606 260607 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 260606 261714 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261713 261714 . + . intron_id 0 ; splice_site "tg" KQ414889.1 exonerate:protein2genome:local cds 261715 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261715 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262012 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262012 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259728 262012 398 + . alignment_id 8 ; Query gi|383850742|ref|XP_003700935.1| ; Align 259728 2 114 ; Align 259848 40 369 ; Align 260220 163 270 ; Align 260493 253 111 ; Align 261716 291 129 ; Align 261926 334 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 390 Query range: 7 -> 263 Target range: 208185 -> 208962 8 : AsnLeuAsnTyrGluAsnAspIleIleTyrValThrLysTyrSerArgTrpIleLeuV : 27 ||| !||||||:!!||||||:!:! !!:! !..!::: !:! !|||! ||| AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 28 : alSerIleGlyIleTrpProAlaSerLeuLysGlySerAlaLysPheLeuSerLys<- : 46 !! !|||||| !|||||| !|||:!! ! !!||| ! ! !|||:!! ysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHi 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCA : 208300 47 : ><->IleAlaIleGlyPheGlyAsnLeuValLeuPhePheAlaIleIleProPheSer : 63 :!! !! !! !.!!.!!:!!! !:!!||| !||| !:!:|||||| !.!! sIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGly 208301 : TATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGC : 208357 64 : LeuHisIleValLeuGluGlnLysAspThrValIleMetLeuLysMetLeuGlyPheL : 83 :!! ! :!!|||! ! :!!||| ! ! !...||||||!!:! !.!! !| MetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaL 208358 : ATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTC : 208417 84 : euSerPheCysLeuIleSerValLeuLysTyrTrpAlaLeuAlaMetArgLysProLy : 102 ||||||||! !:!!!!::!! !! !|||||| ! !:!!.!!:!:|||:!! ! ! euSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAs 208418 : TGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGA : 208474 103 : sIleGluArgCysIleGluLeuMetGlnThrAspTrpLysGlnValGluPheArgArg : 121 |||..!!:!|||:!!|||! !:!::!!.!!||||||!:!.!.|||||| !..!..! pIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGlu 208475 : CATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAG : 208531 122 : AsnArgHisMetMetLeuLysTyrGlyLysValGlyArgAspLeuThrIleLeuCysI : 141 :!!||| ! !!:|||||| ! !!!.!!.. !!!.!||| ! |||! !:!::!!||| AspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysG 208532 : GACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCG : 208591 142 : leValPheMetTyrSerGlyGlyThrIleTyrHisThrIleMetGlnTyrAlaIleGl : 160 !!.!|||||||||.!!||| ...|||::: ! !:!!! ! !.!! !! lyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAs 208592 : GAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGA : 208648 161 : ySerPheIleAspGlu<->HisAsnArgThrIleLysProLeuValTyrProThrTyr : 178 !!.! !!:!!!!:||| !||| !||| !!:! !||||||||||||..! ! pLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValPro 208649 : CAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCT : 208705 179 : SerAlaLeuTyrAspValGlnLysIleHisValTyrValLeuValTyrThrValHisC : 198 !.! !:!! ||||||!:! ! ! !! !||| !!! !:!! !!|||||||||!!.! LysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnL 208706 : AAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAAT : 208765 199 : ysMetCysGlyTyrValIleTyrSerValThrAlaGlyAlaCysGlyLeuAlaAlaLe : 217 :!!! |||!:!||| !:!!!:!:!!|||!.!||||||||||||||||||||||| euLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLe 208766 : TGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCT : 208822 218 : uPheAlaThrHisThrCysGlyGlnIleAspIleValLeuSerArgLeuAsnGlyLeu : 236 |.!!|||! !|||.!!|||||||||:!:.!.|||:!!:!!||| !!:!!.!. !||| uLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeu 208823 : GCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTG : 208879 237 : ValAspAspAsnLeuMetArgHisAspAspLeuAsnGluArgLeuIleGluIleValG : 256 ||||||! ... ! ..!.!. ! :!!|||:!!:!!|||||| !.!.||||||| ValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleValG 208880 : GTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCGTGG : 208939 257 : luHisHisLeuArgThrLeuArg : 263 ||!!.|||:!!|||..!:!!!:! luGlnHisValArgValIleLys 208940 : AGCAGCATGTTCGAGTGATCAAG : 208962 vulgar: gi|383850742|ref|XP_003700935.1| 7 263 . KQ414889.1 208185 208962 + 390 M 38 114 G 0 6 M 120 360 G 0 3 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 208962 390 + . gene_id 9 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208186 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208962 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208186 208962 390 + . alignment_id 9 ; Query gi|383850742|ref|XP_003700935.1| ; Align 208186 8 114 ; Align 208306 46 360 ; Align 208669 166 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 357 Query range: 1 -> 386 Target range: 256607 -> 258624 2 : AsnGlnSerLeuGlnProAsnLeuAsnTyrGluAsnAspIleIleTyrValThrLysT : 21 |||:!!! ! ! ! !!!. !|||!:!:!!!:! !!! ! !||| ! !:!!! AsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerLeuGlnL 256608 : AACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTCTCCAGT : 256665 22 : yrSerArgTrpIleLeuValSerIleGlyIleTrpProAlaSerLeuLysGlySerAl : 40 !:!||||||.!!||| ! !!|||||| !|||||| !!|||! !... !!!!.! euAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerThrThrTh 256666 : TGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCACTACAAC : 256722 41 : a<-><->LysPheLeuSerLysIleAlaIleGlyPheGlyAsnLeuValLeuPhePhe : 57 ! ::! !:!!|||! :!! !! ! ! !! !! !! ! !:!!!!.||| rLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIleLeuPhe 256723 : CCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTC : 256779 58 : AlaIleIleProPheSerLeuHisIleValLeuGluGlnLysAspThrValIleMetL : 77 .!!:!:||||||! !! !||||||:!! !!|||!!:.!. ! ..! ! ::: : ThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrMetLysV 256780 : ACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAcatgaaag : 256839 78 : euLysMetLeuGlyPheLeuSerPheCysLeuIleSerValLeuLysTyrTrpAlaLe : 96 ::||| ...||| !:!!||| !!! :!!|||||| ! !!!.||| ! !|| alLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrThrLeuLe 256840 : tgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACACGTTGCT : 256896 97 : uAlaMetArgLysProLysIleGluArgCysIleGluLeuMetGlnThrAspTrpLys : 115 | !:!:!:! ! ! ! |||... !|||:!!|||! !!!::!!|||||||||!:! uLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAspTrpArg 256897 : GTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGA : 256953 116 : GlnValGluPheArgArgAsnArgHisMetMetLeuLysTyrGlyLysValGlyArgA : 135 ..!|||..! ..!!:!:!!!:!!!.:!!|||:!!||| !!!.!!:! !!|||||| MetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheGlyArgT 256954 : ATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTT : 257013 136 : spLeuThrIleLeuCysIleValPheMetTyrSerGlyGlyThrIleTyrHisThrIl : 154 !!:!!.!!! !!!!||| !!.!.!!||| ! |||||| ::: ..! yrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePheValSe 257014 : ACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttcttcgtGTC : 257070 155 : eMetGlnTyrAlaIleGlySerPhe<->IleAspGluHisAsnArgThrIleLysPro : 172 ! ! !! ! !! !.!! :!:! .!..!.!..! !! !:!:::! ! rSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleValArgVal 257071 : GTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTGCGAGTG : 257127 173 : LeuValTyrProThrTyrSerAlaLeuTyrAspValGlnLysIleHisValTyrValL : 192 ||| ! ! !!..!|||!.! !|||! :!!|||.!.:!!! !! !..! !!! !: LeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrAsnGluI 257128 : CTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGA : 257187 193 : euValTyrThrValHisCysMetCysGlyTyrValIleTyrSerValThrAlaGlyAl : 211 !!||| ! !:!!!!. ! !! ..! !:!! !!!! !|||!.!.!! leValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrValSerIl 257188 : TCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAGTAT : 257244 212 : aCysGlyLeuAlaAlaLeuPheAlaThrHisThrCysGlyGlnIleAspIleValLeu : 230 !! !.!!|||||||||:!!||||||||||||.!!! !||||||:!: !:!::!!:!! ePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrValLeuMet 257245 : ATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATG : 257301 231 : SerArgLeuAsnGlyLeuValAspAspAsnLeuMetArgHisAspAspLeuAsnGluA : 250 ||| !!:!!!..! !!!!|||:!!!!:::: !! |||... ... ! SerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheProPheL 257302 : TCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttcctttCA : 257361 251 : rgLeuIle<->GluIleValGluHisHisLeuArgThrLeu{Ar} >>>> Target : 263 :!! !||| ! !|||||||||||||||||||||..!|||{||} 7 ysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Ar}++ 257362 : AGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt........... : 257407 264 : Intron 1 >>>> {g}PheSerAlaMetMetGluThrValLeuGlnGluValCys : 276 60 bp {|}! ! ! ! .!. !:!!! !|||.!.! !! +-{g}CysValMetTyrArgAsnLeuLeuGlnGlnAsnGly*** 257408 : ..............ac{G}TGCGTTATGTACCGAAACCTGTTGCAACAAAATGGTTAA : 258202 277 : PheLeuGluPheValGlySerThrPheMetIleCysLeuLeuGluTyrTyrThrIleV : 296 !! ! !:! !..!! ! !!.!. ! ::: :::||| ... AsnArgThrTyrAsnAsnPheProIleHisSerTyrSerValIlePheTyrTyrPheG 258203 : AATCGTACCTACAATAATTTTCCTATACACAGctattctgttattttttattattttc : 258262 297 : alAspTrpLysGlnSerAsnThrIleGlyLeuThrThrTyrThrLeuLeuLeuIleSe : 315 :::|||... !...::: ...|||::::::||| !:!!:!!|||||||| lnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheMetIleLeuIleSe 258263 : aggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTATGATACTCATATc : 258319 316 : rLeuThrPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuIleGluLys > : 334 ||||:::||||||||||||::::::||||||||||||!!::!!|||! !|||:!! rLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluGln++ 258320 : actttctttcaatatttttgtaatatgttACATAGGTGAAATATTAACAGAACAGgt. : 258378 335 : >>> Target Intron 2 >>>> SerThrSerIleGlyThrSerSerPheGluIl : 344 90 bp !!!! !!.!:!!||| ! ! !!:! !! ++CysLysLysValGlyAspValValTyrMetTh 258379 : ........................agTGCAAGAAAGTTGGCGACGTGGTTTATATGAC : 258496 345 : eAspTrpTyrArgLeuProThrLysThrIleArgGlyLeuIleLeuIleIleAlaMet : 363 !||||||||| !|||||| !|||! !|||! !! !|||||||||:!!|||||| rAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLeuValIleAlaArg 258497 : AGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTTGGTAATCGCACGA : 258553 364 : SerAsnAsnProValLysIleSerAlaGlyGlyIleValThrLeuSerLeuSerThrP : 383 |||!:! !|||:!!|||!!!|||||| ... ::!|||:!!! !|||| SerSerValValValGlnIleThrAlaGlyLysPhePheHisMetSerIleTyrThrP 258554 : TCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatGTCCATTTACACAT : 258613 384 : heValAsnVal : 386 || !:!!||| heSerAspVal 258614 : TCAGCGATGTG : 258624 vulgar: gi|383850742|ref|XP_003700935.1| 1 386 . KQ414889.1 256607 258624 + 357 M 39 117 G 0 6 M 122 366 G 0 3 M 90 270 G 0 3 M 10 30 S 0 2 5 0 2 I 0 756 3 0 2 S 1 1 M 70 210 5 0 2 I 0 86 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256608 258624 357 + . gene_id 10 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256608 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256608 257404 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 258164 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258163 258164 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 258165 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258165 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256608 258624 357 + . alignment_id 10 ; Query gi|383850742|ref|XP_003700935.1| ; Align 256608 2 117 ; Align 256731 41 366 ; Align 257100 163 270 ; Align 257373 253 30 ; Align 258166 264 210 ; Align 258466 334 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 345 Query range: 1 -> 295 Target range: 266592 -> 267555 2 : AsnGlnSerLeuGlnProAsnLeuAsnTyrGluAsnAspIleIleTyrValThrLysT : 21 |||:!!|||||| ! !.!. !||| .!.!:! ! ! !||| ! !:!!! AsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerLeuGlnL 266593 : AACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCCTGCAAT : 266650 22 : yrSerArgTrpIleLeuValSerIleGlyIleTrp<->ProAlaSerLeuLysGlySe : 39 !:!||||||.!!||| ! !!|||||| !||| ||| !||||||! !..!!. euAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuThrSerLy 266651 : TGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCACATCTAA : 266707 40 : r<->AlaLysPheLeuSerLysIleAlaIleGlyPheGlyAsnLeuValLeuPhePhe : 57 ! ! !::!.!!:!!||| ! ! !|||! !.!! !! !!! ! !:!!.!.||| sLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIleLeuPhe 266708 : ACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATACTGTTC : 266764 58 : AlaIleIleProPheSerLeuHisIleValLeuGluGlnLysAspThrValIleMetL : 77 .!!:!!||||||! !! !!!!|||:!!|||||||||.!.:!!..!! ! !! ! : ThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgThrLysV 266765 : ACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTACGAAAG : 266824 78 : euLysMetLeuGlyPheLeuSerPheCysLeuIleSerValLeuLysTyrTrpAlaLe : 96 !!|||:!!!!!||| !|||||| !!! !!!:!!.!!! !:!!!!.||| .!!|| alLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrThrThrLe 266825 : TGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACACCACACT : 266881 97 : uAlaMetArgLysProLysIleGluArgCysIleGluLeuMetGlnThrAspTrpLys : 115 | !:!:|||!.. !:!!|||... !!|||:!!|||! !|||||||||||||||!:! uLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArg 266882 : GTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGATTGGAGG : 266938 116 : GlnValGluPheArgArgAsnArgHisMetMetLeuLysTyrGlyLysValGlyArgA : 135 ||| ! !..!:!!!:!!!.:!!||||||||| !!!.!!:!:!!|||||| IleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleGlyArgT 266939 : ATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCGGTCGTT : 266998 136 : spLeuThrIleLeuCysIleValPheMetTyrSerGlyGlyThrIleTyrHisThrIl : 154 !!:!!.!!|||!!!||| !.!|||||| ! !!!|||! ! ! !||| !..!|| yrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCysValIl 266999 : ACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGTGAT : 267055 155 : eMetGlnTyrAlaIleGlySerPhe<->IleAspGluHisAsnArgThrIleLysPro : 172 |! ! !!:!.!!!!: !!!! ! :!!! !.!..!.!.!|||! !:!! ! ! ! eThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleValHisLeu 267056 : AACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTACATCTG : 267112 173 : LeuValTyrProThrTyrSerAlaLeuTyrAspValGlnLysIleHisValTyrValL : 192 ||| !! ! !!..!|||!.! !:!! !! |||.!.! ! !! ..! !!! !: LeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrAsnGluI 267113 : TTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGAACGAGA : 267172 193 : euValTyrThrValHisCysMetCysGlyTyrValIleTyrSerValThrAlaGlyAl : 211 !!||| !..! !!!.! !:!:! |||!:!:!!:!: !!||| !..!!.!||||| leValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValValGlyAl 267173 : TTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCGGTGC : 267229 212 : aCysGlyLeuAlaAlaLeuPheAlaThrHisThrCysGlyGlnIleAspIleValLeu : 230 |! !.!!|||||||||:!!||||||.!!|||.!!|||||||||:!:..!:!::!!:!! aPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerValLeuMet 267230 : TTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTGATG : 267286 231 : SerArgLeuAsnGlyLeuValAspAspAsnLeuMetArgHisAspAspLeu<->AsnG : 249 ! ! !!:!!!!.! !!!!|||:!! ::! ! !!!:!! ! :!!:!! !! MetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValCysPheA 267287 : ATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTTGCTTCG : 267346 250 : luArgLeuIleGluIleValGluHisHisLeuArgThrLeu{Ar} >>>> Target : 263 !:!:!:!! !! !:!!||||||||||||||||||..!|||{!!} 6 spLysIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 267347 : ATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG}gt........... : 267392 264 : Intron 1 >>>> {g}PheSerAlaMetMetGluThrValLeuGlnGluValCys : 276 9 bp {!}|||! !||| !!:|||!:!|||:!!...|||:!!||| ++{r}PheIleAlaArgIleGluSerValMetSerGluIleCys 267393 : ..............ag{C}TTCATAGCACGTATCGAAAGTGTAATGAGCGAAATTTGC : 267496 277 : PheLeuGluPheValGlySerThrPheMetIleCysLeuLeuGluTyrTyrThrIle : 295 |||:!!|||!!. !! !!!!|||.!. ||||||:!!|||...||||||! !:!! PheMetGluLeuPheLysCysThrMetAspIleCysValLeuSerTyrTyrIleLeu 267497 : TTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCTATTATATCCTT : 267555 vulgar: gi|383850742|ref|XP_003700935.1| 1 295 . KQ414889.1 266592 267555 + 345 M 31 93 G 0 3 M 7 21 G 0 3 M 123 369 G 0 3 M 85 255 G 0 3 M 15 45 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266593 267555 345 + . gene_id 11 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266593 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266593 267389 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267555 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266593 267555 345 + . alignment_id 11 ; Query gi|383850742|ref|XP_003700935.1| ; Align 266593 2 93 ; Align 266689 33 21 ; Align 266713 40 369 ; Align 267085 163 255 ; Align 267343 248 45 ; Align 267460 264 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 317 Query range: 7 -> 264 Target range: 212845 -> 213625 8 : AsnLeuAsnTyrGluAsnAspIleIleTyrValThrLysTyrSerArgTrpIleLeuV : 27 :!!! !!.!||||||!!. ::: !!::!:!||||||:!!||| AspCysThrTyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuL 212846 : GACTGTACCTACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGA : 212903 28 : alSerIleGlyIleTrpPro<-><->AlaSerLeuLysGlySerAlaLysPheLeuSe : 44 ! !!! |||:!:|||||| :!!! !:!!..! !! !! !||| !:!!:! ysProThrGlyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIleAl 212904 : AACCAACGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGC : 212960 45 : rLysIleAlaIleGlyPheGlyAsnLeuValLeuPhePheAlaIleIleProPheSer : 63 !::!:!:!.!! ! ! !! !! !! !:!!:!! !!:! !:!!||||||! !||| aArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSer 212961 : TCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGT : 213017 64 : LeuHisIleValLeuGluGlnLysAspThrValIleMetLeuLysMetLeuGlyPheL : 83 |||:!!:!: !!|||!!: !:::::: :!!:!!:!!!!!|||.!!! LeuTyrValPheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIleP 213018 : TTGTACGTGTTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTT : 213077 84 : euSerPheCysLeuIleSerValLeuLysTyrTrpAlaLeuAlaMetArgLysProLy : 102 !!:!!||||||:!! !:!!:!!! !|||||| :!!||| !:!:!.! ! ! heAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAs 213078 : TTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGA : 213134 103 : sIleGluArgCysIleGluLeuMetGlnThrAspTrpLysGlnValGluPheArgArg : 121 |||...! !|||:!!|||! !|||:!! !|||||||||.!.:!! ! !..!..! pIleArgThrCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGlu 213135 : TATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAG : 213191 122 : AsnArgHisMetMetLeuLysTyrGlyLysValGlyArgAspLeuThrIleLeuCysI : 141 :!!!:!.!.!!:||| ! ! !!!.!!.. !!|||!:! :!!..!! !:!!||| AspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysA 213192 : GACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTG : 213251 142 : leValPheMetTyrSerGlyGlyThrIleTyrHisThrIleMetGlnTyrAlaIleGl : 160 ! !!|||||||||!!!||| !|||.!!||| ! !:!!:!:! ! !::! ! laPhePheMetTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAs 213252 : CTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGA : 213308 161 : ySerPheIleAspGluHis<->AsnArgThrIleLysProLeuValTyrProThrTyr : 178 !!.!.!.:!!! ||| !! ||| !|||.!!!:!! !:!!||| !|||..!! pLysMetValAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSer 213309 : TAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCG : 213365 179 : SerAlaLeuTyrAspValGlnLysIleHisValTyrValLeuValTyrThrValHisC : 198 !!! !:!! !||||||!:! ! ! !! !||| !!! !:!! !!!:! !:!!!!. ArgPheIleValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnI 213366 : AGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGA : 213425 199 : ysMetCysGlyTyrValIleTyrSerValThrAlaGlyAlaCysGlyLeuAlaAlaLe : 217 !!!:..!||| :!!|||:!!:!!:!!.!!!.!! !||||||.!!|||||||||:! leIleAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaVa 213426 : TTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGT : 213482 218 : uPheAlaThrHisThrCysGlyGlnIleAspIleValLeuSerArgLeuAsnGlyLeu : 236 !||||||..!|||.!!|||||||||!!:! !|||:!!:!!||| !!|||.!. !||| lPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeu 213483 : GTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTG : 213539 237 : ValAspAspAsnLeuMetArgHisAspAspLeuAsnGluArgLeuIleGluIleValG : 256 :!!|||! !!.. ! ! ! ! ! :!!:!!:!!!!:|||:!! ! ||||||. IleAspGlyArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleValA 213540 : ATAGACGGTAGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGA : 213599 257 : luHisHisLeuArgThrLeuArgPhe : 264 !.!!.|||:!!|||! !|||!:!!:: snGlnHisValArgIleLeuLysTrp 213600 : ACCAGCATGTGCGGATACTGAAGTGG : 213625 vulgar: gi|383850742|ref|XP_003700935.1| 7 264 . KQ414889.1 212845 213625 + 317 M 26 78 G 0 6 M 133 399 G 0 3 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212846 213625 317 + . gene_id 12 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212846 213625 . + . KQ414889.1 exonerate:protein2genome:local exon 212846 213625 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212846 213625 317 + . alignment_id 12 ; Query gi|383850742|ref|XP_003700935.1| ; Align 212846 8 78 ; Align 212930 34 399 ; Align 213332 167 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 281 Query range: 1 -> 263 Target range: 274338 -> 275136 2 : AsnGlnSerLeuGlnProAsnLeuAsnTyrGluAsnAspIleIleTyrValThrLysT : 21 ||| :!!:!!.!. !!.! !|||!:!!!:!:! !! ! !||| ! !:!!! AsnCysAlaIleAsnValThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnL 274339 : AACTGTGCGATAAACGTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAAT : 274396 22 : yrSerArgTrpIleLeuValSerIleGlyIleTrpProAlaSerLeuLysGlySer<- : 40 !:!||||||.!!||| ! !!|||||| |||||| !:!!! ! !!!! euAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaSerProThrThrLy 274397 : TGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAA : 274453 41 : ><->AlaLysPheLeuSerLysIleAlaIleGlyPheGlyAsnLeuValLeuPhePhe : 57 ! !::!.!!|||||| ! ::: ||| ... !!! ! !!:!!.!!! ! sPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSer 274454 : ATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTGCTTCATACTCTCC : 274510 58 : AlaIleIleProPheSerLeuHisIleValLeuGluGlnLysAspThrValIleMetL : 77 .!!:!!|||||| !! !!!!||||||:!!|||! !.!.:!!..! ! !:!:! !| ThrValIleProSerIlePheHisIleIleLeuValAspGluSerLeuHisLeuLysL 274511 : ACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGC : 274570 78 : euLysMetLeuGlyPheLeuSerPheCysLeuIleSerValLeuLysTyrTrpAlaLe : 96 |||||:!!|||||| !|||.!! !!! !!!|||.!!! !:!!!!.||| .!!|| euLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLe 274571 : TGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCT : 274627 97 : uAlaMetArgLysProLysIleGluArgCysIleGluLeuMetGlnThrAspTrpLys : 115 | !:!:|||!.. !:!!|||... !!|||:!:|||! !|||||||||||||||!:! uLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArg 274628 : GTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGG : 274684 116 : GlnValGluPheArgArgAsnArgHisMetMetLeuLysTyrGlyLysValGlyArgA : 135 ||| ! !..!:!!!:!!!.:!!||||||||| !!!.!|||:!!|||||| IleValThrArgProGluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgT 274685 : ATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTT : 274744 136 : spLeuThrIleLeuCysIleValPheMetTyrSerGlyGlyThrIleTyrHisThrIl : 154 !!:!!.!!|||!!!||| !.!|||||| ! !!!|||! ! ! !||| !..!|| yrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIl 274745 : ACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGAT : 274801 155 : eMetGlnTyrAlaIleGlySerPhe<->IleAspGluHisAsnArgThrIleLysPro : 172 |! !!:!.!!!!: !!!! !! :!!! .!..!.!.!||||||:!: ! ! eThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrArgThrValHisMet 274802 : AACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATG : 274858 173 : LeuValTyrProThrTyrSerAlaLeuTyrAspValGlnLysIleHisValTyrValL : 192 ||| !! ! !.!!|||!.! !:!! !! |||.!.! !! !! ..! !!! !: LeuProCysLysAlaTyrLysLysIleValAlaValAspThrSerProThrAsnGluI 274859 : TTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGA : 274918 193 : euValTyrThrValHisCysMetCysGlyTyrValIleTyrSerValThrAlaGlyAl : 211 !!||| !.!! !!!.! !:!!! |||!:!:!!:!: !!||| !.!!!.!||||| leValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerSerAlaValGlyAl 274919 : TCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGC : 274975 212 : aCysGlyLeuAlaAlaLeuPheAlaThrHisThrCysGlyGlnIleAspIleValLeu : 230 |! !.!!|||||||||:!!||||||.!!|||.!!! !||||||:!:..!:!::!!:!! aPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMet 274976 : ATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATG : 275032 231 : SerArgLeuAsnGlyLeuValAspAspAsnLeuMetArgHisAspAspLeuAsn<->G : 249 ! ! !!:!!!.!! !!!!|||:!! !!::! ! :::::: :::::: . IleTrpIleThrGluPheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheS 275033 : ATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttca : 275092 250 : luArgLeuIleGluIleValGluHisHisLeuArgThrLeuArg : 263 ....!:!! !! !:!!||||||||||||||||||..!|||||| erGluIleGlyValValValGluHisHisLeuArgValLeuArg 275093 : gCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTCAGG : 275136 vulgar: gi|383850742|ref|XP_003700935.1| 1 263 . KQ414889.1 274338 275136 + 281 M 38 114 G 0 6 M 123 369 G 0 3 M 86 258 G 0 3 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274339 275136 281 + . gene_id 13 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274339 275136 . + . KQ414889.1 exonerate:protein2genome:local exon 274339 275136 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274339 275136 281 + . alignment_id 13 ; Query gi|383850742|ref|XP_003700935.1| ; Align 274339 2 114 ; Align 274459 40 369 ; Align 274831 163 258 ; Align 275092 249 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 256 Query range: 16 -> 263 Target range: 262849 -> 263602 17 : TyrValThrLysTyrSerArgTrpIleLeuValSerIleGlyIleTrpPro<-><->A : 34 ||| ! !:!! !:!||||||:!:||| ! !!|||||| !|||||| | TyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerA 262850 : TACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCG : 262907 35 : laSerLeuLysGlySerAlaLysPheLeuSerLysIleAlaIleGlyPheGlyAsnLe : 53 |||||:!!..! !!! !! !::!.!!:!!!!! :!! !|||! ! !! !! !!! laSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCy 262908 : CCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTG : 262964 54 : uValLeuPhePheAlaIleIleProPheSerLeuHisIleValLeuGluGlnLysAsp : 72 !:!!:!!.!.! !.!!:!!||||||! !! !|||||||||||||||||| :!!:!! sLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsn 262965 : TCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAAT : 263021 73 : ThrValIleMetLeuLysMetLeuGlyPheLeuSerPheCysLeuIleSerValLeuL : 92 ! !!!:! !|||:!!:!:|||||| |||.!! !! !!!:!!.!!:!!:!!! PheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleA 263022 : TTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCA : 263081 93 : ysTyrTrpAlaLeuAlaMetArgLysProLysIleGluArgCysIleGluLeuMetGl : 111 !.||| !||| !:!:!.!!.. ! ! |||:!! !!|||:!::!!! !:!!|| snTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGl 263082 : ATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCA : 263138 112 : nThrAspTrpLysGlnValGluPheArgArgAsnArgHisMetMetLeuLysTyrGly : 130 | !|||||| ||| !..!:!!!:!!.!!!:||||||||| !!!.! nGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAla 263139 : GGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCG : 263195 131 : LysValGlyArgAspLeuThrIleLeuCysIleValPheMetTyrSerGlyGlyThrI : 150 ||| !|||||| !!:!!.!! !! !||| :!!|||||| ! !!!.!! !! ! LysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetC 263196 : AAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGT : 263255 151 : leTyrHisThrIleMetGlnTyrAlaIleGlySerPheIleAsp<->GluHisAsnAr : 168 ! ! ! !:!!! !!:!.!!! ! ! !.!! ||| .!..!.!.!|| ysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrAr 263256 : GCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAG : 263312 169 : gThrIleLysProLeuValTyrProThrTyrSerAlaLeuTyrAspValGlnLysIle : 187 |! !:!!::: !||| !! !|||..!|||!.!! !:!! ! |||.!.! !! ! gIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThrAsn 263313 : AATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAAT : 263369 188 : HisValTyrValLeuValTyrThrValHisCysMetCysGlyTyrValIleTyrSerV : 207 ! ..! !!! !:!! !! !.!!..!!!.! !:!!! |||!:!:!!:!! !:!!. ProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaT 263370 : CCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGA : 263429 208 : alThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisThrCysGlyGlnIl : 226 .!|||!.!||||||! !|||:!!.!!|||:!!|||||| !|||.!!|||||||||:! hrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLe 263430 : CAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTT : 263486 227 : eAspIleValLeuSerArgLeuAsnGlyLeuValAspAspAsnLeuMetArgHisAsp : 245 ::!!:!::!!:!!||| !!:!!!..! !!!!|||:!!.!.::! ! ..!:!! ! uAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLys 263487 : GAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAG : 263543 246 : AspLeuAsn<->GluArgLeuIleGluIleValGluHisHisLeuArgThrLeuArg : 263 :!!||| !! ..!:!! !! !|||||||||||||||||||||..!|||||| AsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeuArg 263544 : AATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTGAGG : 263602 vulgar: gi|383850742|ref|XP_003700935.1| 16 263 . KQ414889.1 262849 263602 + 256 M 17 51 G 0 6 M 131 393 G 0 3 M 84 252 G 0 3 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262850 263602 256 + . gene_id 14 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262850 263602 . + . KQ414889.1 exonerate:protein2genome:local exon 262850 263602 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262850 263602 256 + . alignment_id 14 ; Query gi|383850742|ref|XP_003700935.1| ; Align 262850 17 51 ; Align 262907 34 393 ; Align 263303 165 252 ; Align 263558 249 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 222 Query range: 296 -> 386 Target range: 206050 -> 206401 297 : AspTrpLysGlnSerAsnThrIleGlyLeuThrThrTyrThrLeuLeuLeuIleSerL : 316 !!:|||:!!.!.!:!||||||! !!.!:!!! !..!|||! ! !|||! !||||||! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 317 : euThrPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuIleGluLys >>> : 334 !|||||| !:!!|||||||||||||||||||||.!.|||||||||!!::!! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 335 : > Target Intron 1 >>>> SerThrSerIleGlyThrSerSerPheGluIleA : 345 81 bp !:! ! !:!:||| !!!!|||! ! !:!:: ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 346 : spTrpTyrArgLeuProThrLysThrIleArgGlyLeuIleLeuIleIleAlaMetSe : 364 !!|||||||||||||||!.!!:! ! |||..!:!!|||||||||||||||||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 365 : rAsnAsnProValLysIleSerAlaGlyGlyIleValThrLeuSerLeuSerThrPhe : 383 |||| !!|||:!!|||:!!!!!|||||| !!!: !! !:!!||||||:!!!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 384 : ValAsnVal : 386 ..!:!!||| ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: gi|383850742|ref|XP_003700935.1| 296 386 . KQ414889.1 206050 206401 + 222 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 222 + . gene_id 15 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 222 + . alignment_id 15 ; Query gi|383850742|ref|XP_003700935.1| ; Align 206051 297 111 ; Align 206243 334 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 215 Query range: 288 -> 386 Target range: 214605 -> 215022 289 : LeuLeuGluTyrTyrThrIleValAspTrpLysGlnSerAsnThrIleGlyLeuThrT : 308 :::::::::::: ::: :!:|||!!...!!:!||| !! ! ! !..!| IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 309 : hrTyrThrLeuLeuLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGl : 327 |||||..!:!!|||! !|||||||||||||||||||||||||||...||||||||||| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 328 : yAspLeuLeuIleGluLys >>>> Target Intron 1 >>>> SerThrSerI : 337 |!!:|||:!! !|||:!! 123 bp !!!! !!.!: yGluLeuValSerGluGln++ ++CysLysLysV 214721 : CGAGCTTGTGTCTGAACAGgt.........................agTGCAAAAAGG : 214873 338 : leGlyThrSerSerPheGluIleAspTrpTyrArgLeuProThrLysThrIleArgGl : 356 !!||| ! !|||!:! !|||!!:||||||||||||||| !!!.! !! ! ! ! alGlyGluValSerTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCy 214874 : TCGGAGAAGTATCGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTG : 214930 357 : yLeuIleLeuIleIleAlaMetSerAsnAsnProValLysIleSerAlaGlyGlyIle : 375 !! !|||||||||!!:||||||||||||::: !!||||||.!!!!!||||||..!!!: sCysIleLeuIleMetAlaMetSerAsnSerSerValLysPheThrAlaGlyAsnMet 214931 : TTGCATTTTGATCATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATG : 214987 376 : ValThrLeuSerLeuSerThrPheValAsnVal : 386 ||| !||||||:!!||||||||| !!:!||| ValGluLeuSerIleSerThrPheSerSerVal 214988 : GTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215022 vulgar: gi|383850742|ref|XP_003700935.1| 288 386 . KQ414889.1 214605 215022 + 215 M 45 135 5 0 2 I 0 119 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 215022 215 + . gene_id 16 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 215022 215 + . alignment_id 16 ; Query gi|383850742|ref|XP_003700935.1| ; Align 214606 289 135 ; Align 214864 334 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 212 Query range: 296 -> 386 Target range: 219328 -> 219671 297 : AspTrpLysGlnSerAsnThrIleGlyLeuThrThrTyrThrLeuLeuLeuIleSerL : 316 !!:||||||..!!:!:!!..!! .!! !..!||||||! !:!!||||||||||||| GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 317 : euThrPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuIleGluLys >>> : 334 ||||||||||||||||||||...||||||||||||!!::!!:!! !|||:!: euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln++ 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAggt... : 219442 335 : > Target Intron 1 >>>> SerThrSerIleGlyThrSerSerPheGluIleA : 345 73 bp !! ...|||||| |||!:! !|||! ++CysArgLysIleGlyGluMetSerTyrMetIleG 219443 : ......................agTGtaggaaaattggagaaatgtCGTACATGATCG : 219546 346 : spTrpTyrArgLeuProThrLysThrIleArgGlyLeuIleLeuIleIleAlaMetSe : 364 !:|||||||||||| !! !|||! !! ! ! !! !:!!|||! !||||||||||| luTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaMetSe 219547 : AATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTATGTC : 219603 365 : rAsnAsnProValLysIleSerAlaGlyGlyIleValThrLeuSerLeuSerThrPhe : 383 ||||::! !!:!!|||:!:!!!||||||..!!!:||| !||||||:!!||||||||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPhe 219604 : GAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCACTTTT : 219660 384 : ValAsnVal : 386 ..!:!!||| ThrAspVal 219661 : ACCGACGTG : 219671 vulgar: gi|383850742|ref|XP_003700935.1| 296 386 . KQ414889.1 219328 219671 + 212 M 37 111 5 0 2 I 0 69 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219671 212 + . gene_id 17 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219671 212 + . alignment_id 17 ; Query gi|383850742|ref|XP_003700935.1| ; Align 219329 297 111 ; Align 219513 334 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 207 Query range: 292 -> 386 Target range: 210651 -> 211932 293 : TyrThrIleValAspTrpLysGlnSerAsnThrIleGlyLeuThrThrTyrThrLeuL : 312 !:! !:!! !!!:||| ! ...!.!:!! !!|||.!! ! !||||||! !:!!| PheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValL 210652 : TTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTAC : 210709 313 : euLeuIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuIl : 331 |||||! !|||:!!||||||||||||||||||!!!||||||||||||!!::!!||| euLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAl 210710 : TCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGC : 210766 332 : eGluLys >>>> Target Intron 1 >>>> SerThrSerIleGlyThrSerS : 341 !|||:!: 999 bp !!!..!!.!:!!||| !!.!| aGluGln++ ++ThrValLysValGlyGluLysS 210767 : TGAACAggt.........................agACAGTAAAAGTTGGAGAAAAGT : 211795 342 : erPheGluIleAspTrpTyrArgLeuProThrLysThrIleArgGlyLeuIleLeuIl : 360 ||!:! !|||||||||||||||:!!||| !|||! ! ! !! !:!! !|||!! erTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValValProLeuMe 211796 : CTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGAT : 211852 361 : eIleAlaMetSerAsnAsnProValLysIleSerAlaGlyGlyIleValThrLeuSer : 379 :|||:!!||||||:!!::: !!..!||||||!!!||||||..!:!!:!!..!|||||| tIleSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleValLeuSer 211853 : GATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTTCTTTCA : 211909 380 : LeuSerThrPheValAsnVal : 386 :!!|||!:!|||! !:!!||| IleSerSerPheGlyAspVal 211910 : ATCAGTAGTTTCGGTGACGTA : 211932 vulgar: gi|383850742|ref|XP_003700935.1| 292 386 . KQ414889.1 210651 211932 + 207 M 41 123 5 0 2 I 0 995 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210652 211932 207 + . gene_id 18 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 210652 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210652 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211932 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211932 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210652 211932 207 + . alignment_id 18 ; Query gi|383850742|ref|XP_003700935.1| ; Align 210652 293 123 ; Align 211774 334 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 191 Query range: 296 -> 386 Target range: 224323 -> 224658 297 : AspTrpLysGlnSerAsnThrIleGlyLeuThrThrTyrThrLeuLeuLeuIleSerL : 316 :::|||......|||:!! !! !.!! !..!|||||| !:!!||||||!!:|||| GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 317 : euThrPheAsnIlePheIleLeuCysTyrIleGlyAspLeu >>>> Target Int : 330 ||||||||||||||||||||...||||||||||||!!:||| 65 bp euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeu++ 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGgt............... : 224425 331 : ron 1 >>>> LeuIleGluLysSerThrSerIleGlyThrSerSerPheGluIleA : 345 !!!.!! ::: ...|||||| ! !|||!:! !|||| --PhePheProGlnCysGluLysIleGlyGlnValSerTyrMetIleA 224426 : ..........taTTTTTTCCtcagtgtgaaaaaattggacaAGTGTCGTACATGATCG : 224533 346 : spTrpTyrArgLeuProThrLysThrIleArgGlyLeuIleLeuIleIleAlaMetSe : 364 |||||||||||||| !! !!!.! !! !! ! !!! !|||||||||||||||||||| spTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 224534 : ACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGATGTC : 224590 365 : rAsnAsnProValLysIleSerAlaGlyGlyIleValThrLeuSerLeuSerThrPhe : 383 ||||::! !!:!!|||:!:!!!||||||..!!!:||| !|||!!!|||!!!|||||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThrPhe 224591 : CAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACTTTC : 224647 384 : ValAsnVal : 386 ! !:!!||| GlyAspVal 224648 : GGTGACGTA : 224658 vulgar: gi|383850742|ref|XP_003700935.1| 296 386 . KQ414889.1 224323 224658 + 191 M 33 99 5 0 2 I 0 61 3 0 2 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224658 191 + . gene_id 19 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224324 224422 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224422 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224423 224424 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224423 224487 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224486 224487 . + . intron_id 0 ; splice_site "TA" KQ414889.1 exonerate:protein2genome:local cds 224488 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224488 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224658 191 + . alignment_id 19 ; Query gi|383850742|ref|XP_003700935.1| ; Align 224324 297 99 ; Align 224488 330 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 169 Query range: 296 -> 386 Target range: 272836 -> 273176 297 : AspTrpLysGlnSerAsnThrIleGlyLeuThrThrTyrThrLeuLeuLeuIleSerL : 316 :!:|||! .!. !:!! ! .!!|||||||||||| !:!!:!!|||||||||: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 317 : euThrPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuIleGluLysSer{T : 335 !:||||||||||||||||||::!||||||||||||!!::!!|||! |||!:! !{! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArgVal{I 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGGTA{A : 272951 336 : h} >>>> Target Intron 1 >>>> {r}SerIleGlyThrSerSerPheGlu : 343 } 70 bp {!}...|||||| ! ! !!:! ! l}+- +-{e}LysIleGlyGluValValTyrMet 272952 : T}gc.........................aa{a}aaaattggcGAGGTAGTTTACATG : 273045 344 : IleAspTrpTyrArgLeuProThrLysThrIleArgGlyLeuIleLeuIleIleAlaM : 363 ! :!!|||||| !|||||| !||| !|||! !! !|||||||||||||||:!!! ThrAsnTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerA 273046 : ACGAACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAA : 273105 364 : etSerAsnAsnProValLysIleSerAlaGlyGlyIleValThrLeuSerLeuSerTh : 382 !!!!:! ! !:!!||||||!!!|||||| !!|||||| !!:!!|||:!!! !|| rgCysSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrTh 273106 : GATGCAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACAC : 273162 383 : rPheValAsnVal : 386 ||||! !:!!||| rPheGlyAspVal 273163 : GTTCGGCGATGTA : 273176 vulgar: gi|383850742|ref|XP_003700935.1| 296 386 . KQ414889.1 272836 273176 + 169 M 38 114 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273176 169 + . gene_id 20 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272952 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272952 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272953 272954 . + . intron_id 1 ; splice_site "gc" KQ414889.1 exonerate:protein2genome:local intron 272953 273022 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273021 273022 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 273023 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 273023 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273176 169 + . alignment_id 20 ; Query gi|383850742|ref|XP_003700935.1| ; Align 272837 297 114 ; Align 273024 336 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 296 -> 391 Target range: 238411 -> 238802 297 : AspTrpLysGlnSerAsnThrIleGlyLeuThrThrTyrThrLeuLeuLeuIleSerL : 316 !!:||| !:!!|||:!!.!!! ! !|||! !|||||| !:!! !|||:!!:!!: GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheValAlaLeuValAlaI 238412 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTGTAGCACTCGTTGCTA : 238469 317 : euThrPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuIleGluLys >>> : 334 !!..!! !|||! !||||||||||||||||||.!!!!: !|||! !|||:!! leValSerAsnThrPheIleLeuCysTyrIleSerGluArgLeuThrGluGln++ 238470 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGAAAGGCTGACAGAACAGgt... : 238525 335 : > Target Intron 1 >>>> SerThrSerIleGlyThrSerSerPheGluIleA : 345 106 bp !!! !!.!:!!||| ! ! !!:! !! !| ++CysLeuLysValGlyGluValValTyrMetThrA 238526 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 238662 346 : spTrpTyrArgLeuProThrLysThrIleArgGlyLeuIleLeuIleIleAlaMetSe : 364 |||||||| !|||||| !!:!! !|||! !! !||||||||||||||| ! || spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSe 238663 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATC : 238719 365 : rAsnAsnProValLysIleSerAlaGlyGlyIleValThrLeuSerLeuSerThrPhe : 383 |||| !||||||:!!!!!|||||| !:!!:!! !:!!||||||! !|||||| rAsnValValValLysValThrAlaGlyLysValLeuHisMetSerLeuTyrThrPhe 238720 : GAACGTGGTCGTTAAAGTCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTC : 238776 384 : ValAsnValLeuLysSerSerLeu : 391 ! !:!!||| !:!!!!!!:!||| GlyAspValSerGluThrAsnLeu 238777 : GGCGATGTAAGTGAAACTAATCTT : 238802 vulgar: gi|383850742|ref|XP_003700935.1| 296 391 . KQ414889.1 238411 238802 + 162 M 37 111 5 0 2 I 0 102 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238412 238802 162 + . gene_id 21 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 238412 238522 . + . KQ414889.1 exonerate:protein2genome:local exon 238412 238522 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238523 238524 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238523 238628 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 238627 238628 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238629 238802 . + . KQ414889.1 exonerate:protein2genome:local exon 238629 238802 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238412 238802 162 + . alignment_id 21 ; Query gi|383850742|ref|XP_003700935.1| ; Align 238412 297 111 ; Align 238629 334 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 296 -> 391 Target range: 254071 -> 254448 297 : AspTrpLysGlnSerAsnThrIleGlyLeuThrThrTyrThrLeuLeuLeuIleSerL : 316 !!:|||! !:!!|||:!!.!! ! !||| !||||||! !:!! !|||:!!:!!: GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaV 254072 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTG : 254129 317 : euThrPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuIleGluLysSerTh : 335 !!..! ||| |||::::::|||||||||.!!||| !|||! !|||:!! ! alValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGlnValGl 254130 : TTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGGTACA : 254186 336 : rSer{I} >>>> Target Intron 1 >>>> {le}GlyThrSerSerPheGlu : 343 !..!{|} 92 bp {||}||| ! ! !!:! ! nGlu{I}-+ ++{le}GlyGluValValTyrMet 254187 : AGAG{A}ct.........................ag{TT}GGTGAAGTGGTTTACATG : 254302 344 : IleAspTrpTyrArgLeuProThrLysThrIleArgGlyLeuIleLeuIleIleAlaM : 363 ! !||||||||| !|||||| !!:!! !|||! !! !|||||||||||||||.!! ThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrA 254303 : ACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACAC : 254362 364 : etSerAsnAsnProValLysIleSerAlaGlyGlyIleValThrLeuSerLeuSerTh : 382 |||||| !|||:!!|||!!!|||||| ||| :::||||||! !|| rgSerAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrTh 254363 : GATCGAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACAC : 254419 383 : rPheValAsnValLeuLysSerSerLeu : 391 ||||! !:!!||| !:!!!!!!:!||| rPheGlyAspValSerGluThrAsnLeu 254420 : GTTCGGCGATGTAAGTGAAACTAATCTT : 254448 vulgar: gi|383850742|ref|XP_003700935.1| 296 391 . KQ414889.1 254071 254448 + 145 M 40 120 S 0 1 5 0 2 I 0 88 3 0 2 S 1 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254072 254448 145 + . gene_id 22 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254072 254192 . + . KQ414889.1 exonerate:protein2genome:local exon 254072 254192 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254193 254194 . + . intron_id 1 ; splice_site "CT" KQ414889.1 exonerate:protein2genome:local intron 254193 254284 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254283 254284 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254285 254448 . + . KQ414889.1 exonerate:protein2genome:local exon 254285 254448 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254072 254448 145 + . alignment_id 22 ; Query gi|383850742|ref|XP_003700935.1| ; Align 254072 297 120 ; Align 254287 338 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 331 -> 386 Target range: 234982 -> 235147 332 : GluLysSerThrSerIleGlyThrSerSerPheGluIleAspTrpTyrArgLeuProT : 351 :!!:!!!!!|||!.!:!!||| !!.! !!:! !! !!!:||||||||||||||| GlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProH 234983 : CAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTC : 235040 352 : hrLysThrIleArgGlyLeuIleLeuIleIleAlaMetSerAsnAsnProValLysIl : 370 !|||||| !! !||||||:!!:!!||||||:!!! !|||!:!! !:!!||||| isLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIl 235041 : ATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAAT : 235097 371 : eSerAlaGlyGlyIleValThrLeuSerLeuSerThrPheValAsnVal : 386 |!!!|||||| !.!!:!! !:!!|||:!!:!!||||||! !:!!||| eThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235098 : CACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: gi|383850742|ref|XP_003700935.1| 331 386 . KQ414889.1 234982 235147 + 120 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234983 235147 120 + . gene_id 23 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234983 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234983 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234983 235147 120 + . alignment_id 23 ; Query gi|383850742|ref|XP_003700935.1| ; Align 234983 332 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 180 -> 238 Target range: 202712 -> 202886 181 : LeuTyrAspValGlnLysIleHisValTyrValLeuValTyrThrValHisCysMetC : 200 :!! !||||||::! ! ! !! !||| !!! !:!! !!!:!:!!:!!!.. !:!:. IleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleValA 202713 : ATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAG : 202770 201 : ysGlyTyrValIleTyrSerValThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAl : 219 .!! ! !:!!|||:!!.!!||||||!.!||||||||| !!|||.!!||||||||||| laValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAl 202771 : CTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGC : 202827 220 : aThrHisThrCysGlyGlnIleAspIleValLeuSerArgLeuAsnGlyLeuValAsp : 238 |..!||| !|||||||||!!:|||:!!:!!:!!:!! !!|||.!. !|||:!!||| aValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMetAsp 202828 : GGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGAT : 202884 vulgar: gi|383850742|ref|XP_003700935.1| 180 238 . KQ414889.1 202712 202886 + 115 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202713 202886 115 + . gene_id 24 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202713 202886 . + . KQ414889.1 exonerate:protein2genome:local exon 202713 202886 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202713 202886 115 + . alignment_id 24 ; Query gi|383850742|ref|XP_003700935.1| ; Align 202713 181 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 202 -> 238 Target range: 202973 -> 203081 203 : ValIleTyrSerValThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisT : 222 :!!|||:!!.!!||||||!.!||||||||| !!|||.!!||||||||||||..!||| LeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAlaValHisA 202974 : CTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTATTTGCGGTTCACG : 203031 223 : hrCysGlyGlnIleAspIleValLeuSerArgLeuAsnGlyLeuValAsp : 238 !|||||||||!!:|||:!!:!!:!!:!! !!|||.!. !|||:!!||| spCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMetAsp 203032 : ATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGAT : 203081 vulgar: gi|383850742|ref|XP_003700935.1| 202 238 . KQ414889.1 202973 203081 + 105 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202974 203081 105 + . gene_id 25 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202974 203081 . + . KQ414889.1 exonerate:protein2genome:local exon 202974 203081 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202974 203081 105 + . alignment_id 25 ; Query gi|383850742|ref|XP_003700935.1| ; Align 202974 203 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 296 -> 333 Target range: 264537 -> 264648 297 : AspTrpLysGlnSerAsnThrIleGlyLeuThrThrTyrThrLeuLeuLeuIleSerL : 316 !!:|||:!!... ::: ...|||||||||||| !:!!:!!|||||||||: GluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerM 264538 : GAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATACTGATATCAA : 264595 317 : euThrPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuIleGluLys : 333 !! ! !|||||||||:!!:!!||||||||||||!!::!!|||! !|||::: etCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGln 264596 : TGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcag : 264648 vulgar: gi|383850742|ref|XP_003700935.1| 296 333 . KQ414889.1 264537 264648 + 102 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264538 264648 102 + . gene_id 26 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264538 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264538 264648 102 + . alignment_id 26 ; Query gi|383850742|ref|XP_003700935.1| ; Align 264538 297 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1173 Query range: 0 -> 406 Target range: 256601 -> 258738 1 : MetThrThrProAlaSerValValProThrAspLeuAspSerLeuSerAspTyrSerL : 20 ||||||!.! ! !:!!|||||| !|||:!!!!! ! |||! !||||||||||||| MetThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerL 256602 : ATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTC : 256659 21 : euGlnLeuAsnLysTrpLeuLeuIleThrIleGlyAlaTrpProSerThrProSerTh : 39 |||||||||||::!|||!!!|||! ! !!||||||||||||||| !!:!! !!||||| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 256660 : TCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCAC : 256716 40 : rThrLysIleGluLysIleValSerPheIleLeuIleValIleCysTyrCysThrIle : 58 ||||! :!!|||::!! !||||||.!!:!!|||! !:!!:!!|||||| !!:!!||| rThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIle 256717 : TACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATA : 256773 59 : LeuThrThrValLeuProSerIleLeuTyrValIleLeuAlaAspGluAspLeuGlnG : 78 ||| !|||:!!:!!|||!!!:!:|||:!!|||.!!|||! !|||!!:..!!!! ! . LeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrM 256774 : TTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAca : 256833 79 : lnLysLeuMetValMetGlyProLeuSerHisTrpPheIleGlyGlyIleAsnTyrTh : 97 ..|||::: ...||||||:!!|||||||||.!!|||.!! !! !|||||||| etLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrTh 256834 : tgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACAC : 256890 98 : rThrLeuLeuLeuArgGlyLysGluIleGlnCysCysIleLysArgValGlnThrAsp : 116 | !|||||||||!:!||||||!!:|||!::! !|||:!!:!!!.!:!!:!!|||||| rLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAsp 256891 : GTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGAT : 256947 117 : TrpArgThrValThrArgLeuAsnAspGlnLysIleMetMetArgAsnAlaGluIleG : 136 ||||||! !|||! !||| !!!.||||||:!!:!:||||||!:!||||||..!.!!| TrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheG 256948 : TGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCG : 257007 137 : lyArgTyrValValValCysCysThrAlaPheMetGlnGlyGlyValLeuCysTyrCy : 155 |||||||||||!.!..!! !|||.!!|||.!!||||||.!!||||||...|||::: lyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePh 257008 : GTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttctt : 257064 156 : sValIleThrGlyPheThrThrGluValValGlnValGlyAsnGluThrArgThrVal : 174 ||| :!!!.!.!.!.!||||||:!!:!!!!.|||||||||||||||! !! !||| eValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleVal 257065 : cgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTG : 257121 175 : ArgLeuLeuProCysAlaAlaTyrLysLysLeuIleProValAspThrSerProThrA : 194 |||:!!|||||| !.!!!.!||||||||||||:!: !|||||| !|||||||||| ArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrA 257122 : CGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGA : 257181 195 : snGluIleIleLeuPheValGlnPheLeuAlaGlyPheValValAsnSerThrThrVa : 213 ||||||||:!::!!|||:!!||| !! !:!!..!.!!:!!!.!!.!!!!!:!||||| snGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrVa 257182 : ACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGT : 257238 214 : lGlyAlaPheSerLeuAlaIleValPheAlaAlaHisAlaTyrGlyGlnLeuAspVal : 232 |.!! !|||||||||||| !|||||||||.!!|||||||||||||||||| !||| lSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrVal 257239 : TAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTG : 257295 233 : LeuSerThrTrpIleThrGluPheValAsnGlnSerArgGluHisAspLysAsnAlaP : 252 |||! !:!!|||||||||||||||||||||:!!||||||.!.!..:::|||... LeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheP 257296 : CTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttc : 257355 253 : heLeuAsnSerIleGlyProAlaValGluLysHisLeuAsnValLeu{Th} >>>> : 268 ..!!!...!|||||| ! !|||||| ! ||||||!..||||||{!:} roPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Se}++ 257356 : ctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt..... : 257407 269 : Target Intron 1 >>>> {r}PheIleSerHisIleGluAspMetLeuThrGlu : 279 76 bp {!}|||||||||:!!||||||!!::!!:!!!.!..! ++{r}PheIleSerTyrIleGluGluValMetAsnArg 257408 : ....................ag{T}TTCATATCATATATCGAGGAAGTGATGAACCGA : 257512 280 : MetCysPheLeuGluLeuPheGlnCysThrPheGlyIleCysLeuLeuGlyTyrTyrV : 299 !!:||||||||||||||||||::!||||||.!.!.!||||||:!!||||||||||||: IleCysPheLeuGluLeuPheArgCysThrLeuAlaIleCysMetLeuGlyTyrTyrI 257513 : ATATGTTTTTTAGAGTTGTTTAGATGCACGCTGGCTATATGCATGCTGGGATACTACA : 257572 300 : alLeuLeu >>>> Target Intron 2 >>>> TyrTrpAlaLeuHisAspLeu : 308 !!||| ! 684 bp |||:!! !!..|||::: leLeuAla++ ++GluTrpSerThrGlnAspIle 257573 : TTCTTGCGgt.........................aggaATGGTCTACGCaagatatt : 258283 309 : GlnAsnMetValThrCysSerIleIleLeuPheSerMetSerCysAsnIlePheValV : 328 ||||||::: ::: !! !!!:||||||.!.|||:::||| ||||||||||||: GlnAsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValI 258284 : caaaatttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaa : 258343 329 : alCysPheIleGlyGluLysLeuSerGluGln >>>> Target Intron 3 >>> : 339 ::|||::!|||||||||! !|||!!!|||||| 90 bp leCysTyrIleGlyGluIleLeuThrGluGln++ 258344 : tatgttACATAGGTGAAATATTAACAGAACAGgt........................ : 258378 340 : > CysThrLysValGlyGluAlaValTyrMetThrGluTrpTyrHisLeuProGlyL : 357 |||! !|||||||||!!:!.!||||||||||||!!:||||||:!!||||||! !| ++CysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspL 258379 : .agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACA : 258520 358 : ysAspIleLeuAspLeuValLeuIleIleSerArgSerSerValValThrLysIleTh : 376 || ||||||||||||:!!|||:!!|||:!!|||||||||||||||..!:!!||||| ysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleTh 258521 : AAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCAC : 258577 377 : rAlaGlyLysIleValHisMetSerLeuTyrThrPheThrThr >>>> Target I : 391 ||||||||||... |||||||||:!!|||||||||!:! ! 69 rAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAsp++ 258578 : CGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATgt............. : 258624 392 : ntron 4 >>>> ValMetLysThrAlaPheAlaTyrIleAsnValLeuArgGlnTh : 405 bp |||!!:||||||:!!|||||||||:!:|||:!!|||||||||.. ++ValIleLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnVa 258625 : ............agGTAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGT : 258733 406 : rThr : 406 !:!! lSer 258734 : ATCG : 258738 vulgar: gi|383850716|ref|XP_003700922.1| 0 406 . KQ414889.1 256601 258738 + 1173 M 267 801 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256602 258738 1173 + . gene_id 1 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256602 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256602 257404 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256602 258738 1173 + . alignment_id 1 ; Query gi|383850716|ref|XP_003700922.1| ; Align 256602 1 801 ; Align 257482 269 99 ; Align 258265 302 111 ; Align 258466 339 156 ; Align 258691 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1168 Query range: 0 -> 406 Target range: 259721 -> 262201 1 : MetThrThrProAlaSerValValProThrAspLeuAspSerLeuSerAspTyrSerL : 20 ||||||!.! !:!! ! !!||| !|||..!!!! !|||! !||||||||||||| MetThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerL 259722 : ATGACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCC : 259779 21 : euGlnLeuAsnLysTrpLeuLeuIleThrIleGlyAlaTrpProSerThrProSerTh : 39 |||||!!!|||::!|||!!!|||! ! !!||||||||||||||| !!:!! !!||||| euGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 259780 : TCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCAC : 259836 40 : rThrLysIleGluLysIleValSerPheIleLeuIleValIleCysTyrCysThrIle : 58 ||||!:!:!!|||||||||:!!||| !!||||||||| !!||||||||| !!|||||| rThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIle 259837 : GACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATA : 259893 59 : LeuThrThrValLeuProSerIleLeuTyrValIleLeuAlaAspGluAspLeuGlnG : 78 |||..!|||:!!:!!|||!!!:!!|||:!!:!!:!!|||! ! ! |||..!||| ! . LeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrM 259894 : CTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACA : 259953 79 : lnLysLeuMetValMetGlyProLeuSerHisTrpPheIleGlyGlyIleAsnTyrTh : 97 .!||| !! !|||:!:|||||||||!!!|||||||||:!!||| !!||||||||||| etLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrTh 259954 : TGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACAC : 260010 98 : rThrLeuLeuLeuArgGlyLysGluIleGlnCysCysIleLysArgValGlnThrAsp : 116 |||||||||||||||||||!:!!!:|||! !!|||:!::!!!.!|||:!!!.!||| rThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAsp 260011 : AACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGAT : 260067 117 : TrpArgThrValThrArgLeuAsnAspGlnLysIleMetMetArgAsnAlaGluIleG : 136 ||||||! !:!!|||||| !!!.||||||!!.:!:|||:!!||| !!|||:!!.!!| TrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheG 260068 : TGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCG : 260127 137 : lyArgTyrValValValCysCysThrAlaPheMetGlnGlyGlyValLeuCysTyrCy : 155 |||||||||||!.!!.!! !|||.!!||||||:!!||||||||||||||||||!:!|| lyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCy 260128 : GCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTG : 260184 156 : sValIleThrGlyPheThrThrGluValValGlnValGlyAsnGluThrArgThrVal : 174 |:!!:!!|||! !!!.!:!|||||||||:!!|||||||||||||||||||||! !||| sLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal 260185 : TTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTT : 260241 175 : ArgLeuLeuProCysAlaAlaTyrLysLysLeuIleProValAspThrSerProThrA : 194 !.!|||||||||||||||!.!||||||:!!|||||| !|||:!! !||||||! !| HisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetA 260242 : CATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGA : 260301 195 : snGluIleIleLeuPheValGlnPheLeuAlaGlyPheValValAsnSerThrThrVa : 213 ||||||||:!!||| !!|||||||||:!!:!!||||||:!!|||||||||!:!||||| snGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrVa 260302 : ACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGT : 260358 214 : lGlyAlaPheSerLeuAlaIleValPheAlaAlaHisAlaTyrGlyGlnLeuAspVal : 232 |||| !|||||||||||| !|||.!..!!|||||||||! !|||||||||:!!||| lGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnVal 260359 : TGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTG : 260415 233 : LeuSerThrTrpIleThrGluPheValAsnGlnSerArgGluHisAspLysAsnAlaP : 252 |||! ! !||||||||||||||||||:!!:!!||||||.!.... ! |||!!.||| LeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaP 260416 : CTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTC : 260475 253 : heLeuAsnSerIleGlyProAlaValGluLysHisLeuAsnValLeu{Th} >>>> : 268 !!!!!!...!|||||| ! !|||||| ! ||||||!..!.!|||{||} roPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeu{Th}++ 260476 : CTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC{AC}gt..... : 260527 269 : Target Intron 1 >>>> {r}PheIleSerHisIleGluAspMetLeuThrGlu : 279 257 bp {|}|||||||||!.!|||||||||:!!:!!!.!..! ++{r}PheIleSerArgIleGluAspValMetAsnArg 260528 : ....................ag{C}TTCATATCGCGTATCGAGGATGTGATGAACCGG : 260813 280 : MetCysPheLeuGluLeuPheGlnCysThrPheGlyIleCysLeuLeuGlyTyrTyrV : 299 !!:||||||||||||||||||::!||||||.!.! !|||||||||||||||||||||: IleCysPheLeuGluLeuPheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrI 260814 : ATATGCTTCCTGGAGTTGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATA : 260873 300 : alLeuLeu >>>> Target Intron 2 >>>> TyrTrpAlaLeuHisAspLeu : 308 !!|||:!! 852 bp ! |||||| !!!.|||:!! leLeuMet++ ++GluTrpAlaGluGlnAspIle 260874 : TTCTTATGgt.........................agGAATGGGCTGAGCAAGATATA : 261752 309 : GlnAsnMetValThrCysSerIleIleLeuPheSerMetSerCysAsnIlePheValV : 328 ||||||:!! !|||! !! !!!:!!:|||.!.:!!!!:!!!! !|||:!!|||:!!: GlnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheIleI 261753 : CAAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAA : 261812 329 : alCysPheIleGlyGluLysLeuSerGluGln >>>> Target Intron 3 >>> : 339 !!|||!:!|||||||||! !|||!!!|||||| 81 bp leCysTyrIleGlyGluIleLeuThrGluGln++ 261813 : TCTGTTACATCGGTGAAATACTAACGGAACAGgt........................ : 261847 340 : > CysThrLysValGlyGluAlaValTyrMetThrGluTrpTyrHisLeuProGlyL : 357 |||:!!|||||||||!!:!.!||||||||||||.!.||||||:!!||||||! !| ++CysSerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuProAspL 261848 : .agTGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACCTGATA : 261980 358 : ysAspIleLeuAspLeuValLeuIleIleSerArgSerSerValValThrLysIleTh : 376 ||..!||||||||||||:!!|||||||||:!!|||!.! !! !! !!.! !!.!!! ysSerIleLeuAspLeuIleLeuIleIleAlaArgLysProProGlyAsn***PheLy 261981 : AAAGTATCCTTGATTTGATTTTGATCATTGCACGAAAACCGCCGGGAAATTAGTTCAA : 262037 377 : rAlaGlyLysIleValHisMetSer{Le} >>>> Target Intron 4 >>>> : 385 !..! ::!.!!..!!.! !:!!{:!} 75 bp sCys---ArgPheThrArgSerAla{Il}++ ++ 262038 : ATGT---CGGTTTACACGTTCGGCG{AT}gt.........................ag : 262136 386 : {u}TyrThrPheThrThrValMetLysThrAlaPheAlaTyrIleAsnValLeuArgG : 404 {!} !.!. ! !|||:!:||||||||||||||||||:!:|||:!!||||||| {e}ProLeuIlePheGlnValValLysThrAlaPheAlaTyrLeuAsnLeuLeuArgG 262137 : {T}CCGTTGATATTCCAGGTGGTTAAAACTGCTTTCGCGTATCTGAATCTGTTGCGTC : 262193 405 : lnThrThr : 406 ||! !||| lnMetThr 262194 : AAATGACG : 262201 vulgar: gi|383850716|ref|XP_003700922.1| 0 406 . KQ414889.1 259721 262201 + 1168 M 267 801 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 39 117 G 1 0 M 6 18 S 0 2 5 0 2 I 0 71 3 0 2 S 1 1 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259722 262201 1168 + . gene_id 2 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259722 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259722 260524 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262062 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262062 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 262063 262064 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 262063 262137 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 262136 262137 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 262138 262201 . + . KQ414889.1 exonerate:protein2genome:local exon 262138 262201 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259722 262201 1168 + . alignment_id 2 ; Query gi|383850716|ref|XP_003700922.1| ; Align 259722 1 801 ; Align 260783 269 99 ; Align 261734 302 111 ; Align 261926 339 117 ; Align 262043 379 18 ; Align 262139 386 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1045 Query range: 7 -> 300 Target range: 274353 -> 275306 8 : ValProThrAspLeuAspSerLeuSerAspTyrSerLeuGlnLeuAsnLysTrpLeuL : 27 ||| !!.!!:!!!!!|||||||||||||||||||||||||||||||||::!|||!!!| ValThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheL 274354 : GTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCT : 274411 28 : euIleThrIleGlyAlaTrpProSerThrProSerThrThrLysIleGluLysIleVa : 46 ||! !!|||||||||||||||! !.!! !! !!|||||||||.!!|||::!|||:! euLysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLe 274412 : TGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCT : 274468 47 : lSerPheIleLeuIleValIleCysTyrCysThrIleLeuThrThrValLeuProSer : 65 !||| !:::|||||| :::||||||||| !||||||:!!||||||:!!|||||| uSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSer 274469 : TTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGC : 274525 66 : IleLeuTyrValIleLeuAlaAspGluAspLeuGlnGlnLysLeuMetValMetGlyP : 85 |||!!!:!!:!!||||||!.!||||||..!|||!!.! !||||||! !:!!:!:|||| IlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyP 274526 : ATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTC : 274585 86 : roLeuSerHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgGlyLy : 104 |||||.!!|||||||||||||||||||||||||||||||||||||||||||||.!!|| roLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLy 274586 : CTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAA : 274642 105 : sGluIleGlnCysCysIleLysArgValGlnThrAspTrpArgThrValThrArgLeu : 123 |||||||!:: !!|||:!::!!!.!:!!|||||||||||||||! !|||||||||! ! sGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgPro 274643 : AGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCG : 274699 124 : AsnAspGlnLysIleMetMetArgAsnAlaGluIleGlyArgTyrValValValCysC : 143 .!.||||||:!!:!:|||:!!!:!||||||:!!|||||||||||||||!.!:!!! !| GluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheC 274700 : GAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCT : 274759 144 : ysThrAlaPheMetGlnGlyGlyValLeuCysTyrCysValIleThrGlyPheThrTh : 162 ||.!!|||||||||||| !!|||||||||||||||||||||||||||!.!||||||! ysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMe 274760 : GTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTAT : 274816 163 : rGluValValGlnValGlyAsnGluThrArgThrValArgLeuLeuProCysAlaAla : 181 !:!!..!||||||||||||||||||||||||||||||!.!:!!||||||||| !||| tGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAla 274817 : GCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCT : 274873 182 : TyrLysLysLeuIleProValAspThrSerProThrAsnGluIleIleLeuPheValG : 201 |||||||||:!!:!! !!|||||||||||||||||||||||||||:!!||| ! !| TyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerG 274874 : TACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGC : 274933 202 : lnPheLeuAlaGlyPheValValAsnSerThrThrValGlyAlaPheSerLeuAlaIl : 220 |||||:!!:!!||||||:!!|||||||||!:!.!!||||||||||||||||||||| lnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAl 274934 : AATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGC : 274990 221 : eValPheAlaAlaHisAlaTyrGlyGlnLeuAspValLeuSerThrTrpIleThrGlu : 239 !||||||||||||||||||||||||||||||..!||||||! !! !|||||||||||| aValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGlu 274991 : CGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAG : 275047 240 : PheValAsnGlnSerArgGluHisAspLysAsnAlaPheLeuAsnSerIleGlyProA : 259 |||||||||!!.||||||!!:...:::||||||...:::...::!..!|||||| !! PheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValV 275048 : TTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGG : 275107 260 : laValGluLysHisLeuAsnValLeu{Th} >>>> Target Intron 1 >>>> : 268 .!|||||| ! ||||||!..||||||{!:} 74 bp alValGluHisHisLeuArgValLeu{Se}++ + 275108 : TTGTCGAACATCATCTGAGGGTACTC{AG}gt.........................a : 275208 269 : {r}PheIleSerHisIleGluAspMetLeuThrGluMetCysPheLeuGluLeuPhe : 286 {!}||||||:!!!.!|||||||||:!!:!!!.!..!!!:||||||:!!||||||||| +{r}PheIleAlaArgIleGluAspValMetAsnArgIleCysPheMetGluLeuPhe 275209 : g{T}TTCATAGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAATTGTTC : 275262 287 : GlnCysThrPheGlyIleCysLeuLeuGlyTyrTyrValLeu : 300 :!!||||||.!.! !!!:|||:!!||||||||||||:!!||| LysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleLeu 275263 : AAGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTCTC : 275306 vulgar: gi|383850716|ref|XP_003700922.1| 7 300 . KQ414889.1 274353 275306 + 1045 M 260 780 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274354 275306 1045 + . gene_id 3 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274354 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274354 275135 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274354 275306 1045 + . alignment_id 3 ; Query gi|383850716|ref|XP_003700922.1| ; Align 274354 8 780 ; Align 275211 269 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1003 Query range: 0 -> 300 Target range: 266586 -> 267555 1 : MetThrThrProAlaSerValValProThrAspLeuAspSerLeuSerAspTyrSerL : 20 |||.!!!.! !:!!! !|||:!! !.!!:!!|||:!!||||||||||||||||||| MetAlaAsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerL 266587 : ATGGCTAACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCC : 266644 21 : euGlnLeuAsnLysTrpLeuLeuIleThrIleGlyAlaTrpProSerThrProSerTh : 39 |||||||||||::!|||!!!|||! ! !!||||||||||||||| !! ! !! !|| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuTh 266645 : TGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCAC : 266701 40 : rThrLysIleGluLysIleValSerPheIleLeuIleValIleCysTyrCysThrIle : 58 |:!!|||:!!|||::!|||||||||!:! !|||||||||||||||||||||:!!||| rSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIle 266702 : ATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATA : 266758 59 : LeuThrThrValLeuProSerIleLeuTyrValIleLeuAlaAspGluAspLeuGlnG : 78 ||| !||||||:!!|||!!!:!:!!!:!!:!!:!!|||! !||||||..!:!!!:: LeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgT 266759 : CTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTA : 266818 79 : lnLysLeuMetValMetGlyProLeuSerHisTrpPheIleGlyGlyIleAsnTyrTh : 97 !|||:!!! !|||.!.|||||||||||||||||||||:!!||||||||||||||||| hrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrTh 266819 : CGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACAC : 266875 98 : rThrLeuLeuLeuArgGlyLysGluIleGlnCysCysIleLysArgValGlnThrAsp : 116 ||||||||||||||||.!!|||||||||!:: !!|||:!!:!!!.!:!!||||||||| rThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAsp 266876 : CACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGAT : 266932 117 : TrpArgThrValThrArgLeuAsnAspGlnLysIleMetMetArgAsnAlaGluIleG : 136 ||||||! !|||||||||! !.!.|||:!!:!!:!:|||:!!!:!||||||..!|||| TrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleG 266933 : TGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCG : 266992 137 : lyArgTyrValValValCysCysThrAlaPheMetGlnGlyGlyValLeuCysTyrCy : 155 ||||||||:!!!.!:!!! !|||.!!|||||||||||| !!||||||||| !!||||| lyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCy 266993 : GTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTG : 267049 156 : sValIleThrGlyPheThrThrGluValValGlnValGlyAsnGluThrArgThrVal : 174 ||||||||||!.!||||||! !:!!..!|||:!!||||||||||||||||||! !||| sValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleVal 267050 : TGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTA : 267106 175 : ArgLeuLeuProCysAlaAlaTyrLysLysLeuIleProValAspThrSerProThrA : 194 !.!|||||||||||||||!.!|||||||||:!!||| !!||||||||||||||||||| HisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrA 267107 : CATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGA : 267166 195 : snGluIleIleLeuPheValGlnPheLeuAlaGlyPheValValAsnSerThrThrVa : 213 ||||||||:!!||| !! !||||||:!!:!!||||||:!!|||||||||!:!..!|| snGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValVa 267167 : ACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGT : 267223 214 : lGlyAlaPheSerLeuAlaIleValPheAlaAlaHisAlaTyrGlyGlnLeuAspVal : 232 ||||||||||||||||||| !||||||||||||||||||! !|||||||||..!||| lGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerVal 267224 : CGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTG : 267280 233 : LeuSerThrTrpIleThrGluPheValAsnGlnSerArgGluHisAspLysAsnAlaP : 252 |||! !! !||||||! !||||||||||||!:!||||||!!: !:!!||||||!.!! LeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValC 267281 : CTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTT : 267340 253 : heLeuAsnSerIleGlyProAlaValGluLysHisLeuAsnValLeu{Th} >>>> : 268 !!!!:!!!.!|||||| !!.!|||||| ! ||||||!..||||||{!:} ysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 267341 : GCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG}gt..... : 267392 269 : Target Intron 1 >>>> {r}PheIleSerHisIleGluAspMetLeuThrGlu : 279 69 bp {!}||||||:!!!.!||||||..!:!::!!!:!||| ++{r}PheIleAlaArgIleGluSerValMetSerGlu 267393 : ....................ag{C}TTCATAGCACGTATCGAAAGTGTAATGAGCGAA : 267490 280 : MetCysPheLeuGluLeuPheGlnCysThrPheGlyIleCysLeuLeuGlyTyrTyrV : 299 !!:||||||:!!|||||||||:!!||||||.!.! !||||||:!!|||.!!||||||: IleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSerTyrTyrI 267491 : ATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCTATTATA : 267550 300 : alLeu : 300 !!||| leLeu 267551 : TCCTT : 267555 vulgar: gi|383850716|ref|XP_003700922.1| 0 300 . KQ414889.1 266586 267555 + 1003 M 267 801 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266587 267555 1003 + . gene_id 4 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266587 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266587 267389 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267555 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266587 267555 1003 + . alignment_id 4 ; Query gi|383850716|ref|XP_003700922.1| ; Align 266587 1 801 ; Align 267460 269 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 930 Query range: 13 -> 300 Target range: 262837 -> 263770 14 : SerLeuSerAspTyrSerLeuGlnLeuAsnLysTrpLeuLeuIleThrIleGlyAlaT : 33 ||||||||||||||||||||||||:!!|||::!|||||||||! ! !!|||||||||| SerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaT 262838 : AGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCAT : 262895 34 : rpProSerThrProSerThrThrLysIleGluLysIleValSerPheIleLeuIleVa : 52 ||||| !:!! !!|||! !:!!!:!!!:|||::!|||:!!!!!|||:!!|||||||| rpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleVa 262896 : GGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGT : 262952 53 : lIleCysTyrCysThrIleLeuThrThrValLeuProSerIleLeuTyrValIleLeu : 71 |:!!||||||||| !||||||:!!||||||:!!||||||||||||:!!:!!:!!||| lValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeu 262953 : CGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTA : 263009 72 : AlaAspGluAspLeuGlnGlnLysLeuMetValMetGlyProLeuSerHisTrpPheI : 91 ! !! !|||:!!!!!!!...!||||||..!|||:!:|||||||||.!!!!.||||||: GluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheV 263010 : GAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCG : 263069 92 : leGlyGlyIleAsnTyrThrThrLeuLeuLeuArgGlyLysGluIleGlnCysCysIl : 110 !!||| !|||||||||||| !|||||||||!.!.!!|||!!:|||||| !!|||:! alGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysVa 263070 : TCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGT : 263126 111 : eLysArgValGlnThrAspTrpArgThrValThrArgLeuAsnAspGlnLysIleMet : 129 ::!!!.!|||||| !|||||| !!! !||||||||||||.!.||||||:::|||||| lGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMet 263127 : GCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATG : 263183 130 : MetArgAsnAlaGluIleGlyArgTyrValValValCysCysThrAlaPheMetGlnG : 149 :!!!:!||||||:!! !||||||||||||!.!!.!! !|||.!! !||||||||| LeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnT 263184 : CTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAA : 263243 150 : lyGlyValLeuCysTyrCysValIleThrGlyPheThrThrGluValValGlnValGl : 168 !.!!:!!:!!||| ! |||:!!:!!|||!.!|||||||||:!!|||:!!:!!! !|| hrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGl 263244 : CGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGG : 263300 169 : yAsnGluThrArgThrValArgLeuLeuProCysAlaAlaTyrLysLysLeuIlePro : 187 |||||||||||||! !:!!|||:!!||||||||| !!!.!||||||:!!:!!|||||| yAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLysGluIleIlePro 263301 : TAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCA : 263357 188 : ValAspThrSerProThrAsnGluIleIleLeuPheValGlnPheLeuAlaGlyPheV : 207 |||||||||!:!|||||||||||||||.!!||| !..!|||||||||:!!||||||: ValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheI 263358 : GTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCA : 263417 208 : alValAsnSerThrThrValGlyAlaPheSerLeuAlaIleValPheAlaAlaHisAl : 226 !!|||!.!:!!||||||||||||||||||.!!:!!.!! |||||||||!.!||||| leValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAl 263418 : TCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGC : 263474 227 : aTyrGlyGlnLeuAspValLeuSerThrTrpIleThrGluPheValAsnGlnSerArg : 245 |! !|||||||||:!!||||||! !:!!|||||||||||||||||||||||||||||| aCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArg 263475 : TTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGG : 263531 246 : GluHisAspLysAsnAlaPheLeuAsnSerIleGlyProAlaValGluLysHisLeuA : 265 !!:.!.:!!|||||| !!:!!!!!.!..!|||||| ! !|||||| ! ||||||! AspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuA 263532 : GATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGA : 263591 266 : snValLeu{Th} >>>> Target Intron 1 >>>> {r}PheIleSerHisIl : 273 ..||||||{!:} 72 bp {!}||||||..!!.!|| rgValLeu{Se}++ ++{r}PheIleAspArgIl 263592 : GAGTTCTG{AG}gt.........................ag{T}TTCATAGATCGTAT : 263687 274 : eGluAspMetLeuThrGluMetCysPheLeuGluLeuPheGlnCysThrPheGlyIle : 292 |:!!:!!:!!:!!!:! !!!:||||||:!!|||||||||:!!..!|||.!.! !||| eLysAsnValMetSerThrIleCysPheValGluLeuPheLysAlaThrLeuAspIle 263688 : TAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCAAGGCTACGCTGGATATA : 263744 293 : CysLeuLeuGlyTyrTyrValLeu : 300 |||:!!||||||||||||:!!||| CysMetLeuGlyTyrTyrIleLeu 263745 : TGCATGCTAGGTTACTACATACTT : 263770 vulgar: gi|383850716|ref|XP_003700922.1| 13 300 . KQ414889.1 262837 263770 + 930 M 254 762 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262838 263770 930 + . gene_id 5 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262838 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262838 263601 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 263673 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263672 263673 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 263674 263770 . + . KQ414889.1 exonerate:protein2genome:local exon 263674 263770 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262838 263770 930 + . alignment_id 5 ; Query gi|383850716|ref|XP_003700922.1| ; Align 262838 14 762 ; Align 263675 269 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 546 Query range: 6 -> 283 Target range: 236819 -> 237644 7 : ValValProThrAspLeuAspSerLeuSerAspTyrSerLeuGlnLeuAsnLysTrpL : 26 |||..! !! !:!!:!! !:!! !||||||||||||||||||! !|||::!||| ValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpA 236820 : GTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGG : 236877 27 : euLeuIleThrIleGlyAlaTrpProSerThrProSerThrThrLysIleGluLysIl : 45 !:!!! !!:!||||||.!!||||||..! ! !!||| !!.:!!|||!:!! laMetLysSerIleGlyThrTrpProGlnPheSerSer------AsnLeuGluArgAs 236878 : CGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCG------AACCTCGAGAGAAA : 236928 46 : eValSerPheIleLeuIleValIleCysTyrCysThrIleLeuThrThrValLeuPro : 64 !:!!||| ||||||! !|||||||||||| !.!!|||||| !:!!:!!:!!||| nIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIlePro 236929 : CATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCT : 236985 65 : SerIleLeuTyrValIleLeuAlaAspGluAspLeuGlnGlnLysLeuMetValMetG : 84 !!! |||:!!:!!!!:|||! ! ! ! ! !!!! ! !|||:!!! :!!:!:| CysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuG 236986 : TGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCG : 237045 85 : lyProLeuSerHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgGl : 103 || !!|||||||||||| ! .!! !! !|||!:!||||||! !|||||||||||| ! lySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgAr 237046 : GTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACG : 237102 104 : yLysGluIleGlnCysCysIleLysArgValGlnThrAspTrpArgThrValThrArg : 122 !||| |||!:: !! !.!!!!.!.!:!!:!!|||||||||||||||..!|||||| gLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrThrArg 237103 : TAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGacgaga : 237159 123 : LeuAsnAspGlnLysIleMetMetArgAsnAlaGluIleGlyArgTyrValValValC : 142 ... :::::::::|||:!!!:! !!|||:!!.!!.!!||||||!.!!.!:!!! LysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleS 237160 : aaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTT : 237219 143 : ysCysThrAlaPheMetGlnGlyGlyValLeuCysTyrCysValIleThrGlyPheTh : 161 !|||||| !|||!!:!!.||||||:!!||| ! |||||||||!!:|||!.!! !|| erCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaSerTh 237220 : CTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTCCAC : 237276 162 : rThrGluValValGlnValGlyAsnGluThrArgThrValArgLeuLeuProCysAla : 180 |||| !|||||| !|||||||||:!!|||! !! !:!!|||:!!||||||! !! rThrMetValValValValGlyAsnLysThrThrIleLeuArgValLeuProLeuPro 237277 : CACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGCGTGCTGCCCTTACCA : 237333 181 : AlaTyrLysLysLeuIleProValAspThrSerProThrAsnGluIleIleLeuPheV : 200 !|||||| !|||:!!||||||||||||!:! !!! !|||!!:|||:!!:!!!!. MetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnAspIleValValLeuS 237334 : ATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGACATCGTTGTTTTGT : 237393 201 : alGlnPheLeuAlaGlyPheValValAsnSerThrThrValGlyAlaPheSerLeuAl : 219 !|||||||||:!!||||||:!!!.!|||!:!!:!.!!:!!.!!!.!.!.||||||.! erGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSerValIleSerLeuTh 237394 : CACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAGTGTTATAAGCCTTAC : 237450 220 : aIleValPheAlaAlaHisAlaTyrGlyGlnLeuAspValLeuSerThrTrpIleThr : 238 !! !!.!.!..!!:!!||||||! !|||||||||..!|||:!!! ! !! !||| ! rSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValValMetLeuSerIleGlu 237451 : AAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTTATGTTGTCGATCGAA : 237507 239 : GluPheValAsnGlnSerArgGluHisAspLysAsnAlaPheLeuAsnSerIleGlyP : 258 !!:||||||!:!:!!:!!|||......! |||:!!! ! !!!!:!!..!||| ! AspPheValSerGluAlaArgArgArgGlyLysAspAspHisPheAspGluIleProT 237508 : GATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGA : 237567 259 : roAlaValGluLysHisLeuAsnValLeuThrPheIleSerHisIleGluAspMetLe : 277 !! !||||||:!!||||||!..||||||! !! :!!!!! :!:!!: !!:|| hrIleValGluGluHisLeuArgValLeuLys***ValCysLeuLeuAspLeuIleLe 237568 : CAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAGTATGTTTGTTGGATTTGATTTT : 237624 278 : uThrGluMetCysPheLeu : 283 | ! ! |||||| uLeuMetGlyValPheLeu 237625 : GCTGATGGGTGTGTTTCTC : 237644 vulgar: gi|383850716|ref|XP_003700922.1| 6 283 . KQ414889.1 236819 237644 + 546 M 32 96 G 2 0 M 243 729 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236820 237644 546 + . gene_id 6 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236820 237644 . + . KQ414889.1 exonerate:protein2genome:local exon 236820 237644 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236820 237644 546 + . alignment_id 6 ; Query gi|383850716|ref|XP_003700922.1| ; Align 236820 7 96 ; Align 236916 41 729 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 473 Query range: 16 -> 271 Target range: 232456 -> 233218 17 : AspTyrSerLeuGlnLeuAsnLysTrpLeuLeuIleThrIleGlyAlaTrpProSerT : 36 !!:||||||:!!|||:!!|||:::|||!!!|||! ! !!!!:|||||||||||| !!. GluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgV 232457 : GAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTG : 232514 37 : hrProSerThrThrLysIleGluLysIleValSerPheIleLeuIleValIleCysTy : 55 .! !!..!|||:!!!:! !:!!:!!:!!:!!:!! :!:|||! !:!!! !|||:! alThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHi 232515 : TTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCA : 232571 56 : rCysThrIleLeuThrThrValLeuProSerIleLeuTyrValIleLeuAlaAspGlu : 74 !! ! !!!::!!:!!:!!:!!:!!|||!!!||||||!:!:!!:!:!!!! !||| ! sSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThr 232572 : TTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACG : 232628 75 : AspLeuGlnGlnLysLeuMetValMetGlyProLeuSerHisTrpPheIleGlyGlyI : 94 ..!|||:!!:!!!:!:!!! ! !!!:||||||:!!||||||!::.!.!!:|||! !: SerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluL 232629 : AGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAAT : 232688 95 : leAsnTyrThrThrLeuLeuLeuArgGlyLysGluIleGlnCysCysIleLysArgVa : 113 !:|||||| ! !|||||| !!:!!.!!!.!!:|||! ! !|||:!::!!!:!|| euAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnVa 232689 : TGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGT : 232745 114 : lGlnThrAspTrpArgThrValThrArgLeuAsnAspGlnLysIleMetMetArgAsn : 132 |:!! !|||||||||!.!|||! !!:!! ! ! !!!:: ! :!:|||:!!!:!||| lLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsn 232746 : GAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAAC : 232802 133 : AlaGluIleGlyArgTyrValValValCysCysThrAlaPheMetGlnGlyGlyValL : 152 |||:!!:!!||||||! :!!!.! ! !..!.!! !! !|||!!. !|||||| AlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValG 232803 : GCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCG : 232862 153 : euCysTyrCysValIleThrGlyPheThrThrGluValValGlnValGlyAsnGluTh : 171 !! ! !! :!!:!!||||||.!! !! !.....! !! ! ||||||||||||!: lySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSe 232863 : GCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAG : 232919 172 : rArgThrValArgLeuLeuProCysAlaAlaTyrLysLysLeuIleProValAspThr : 190 ! !:!!:!! !! !|||||||||.!! !|||! !||||||!!: !..! ! rTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPhe 232920 : TTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTC : 232976 191 : SerProThrAsnGluIleIleLeuPheValGlnPheLeuAlaGlyPheValValAsnS : 210 ||||||||||||||||||!!:!!! !!:!!|||! !|||:!!||||||:!!||||||| SerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnS 232977 : AGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACT : 233036 211 : erThrThrValGlyAlaPheSerLeuAlaIleValPheAlaAlaHisAlaTyrGlyGl : 229 ||..!||||||||||||! !.!!|||!.! !|||.!.||| !||||||! !||||| erValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGl 233037 : CCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACA : 233093 230 : nLeuAspValLeuSerThrTrpIleThrGluPheValAsnGlnSerArgGluHisAsp : 248 ||||:!!|||:!!! !:!! :!: !!!:!!.|||:!! !!.! !!:!!.!.!!: nLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGlyGlnGluGlu 233094 : GCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAGGAGGAG : 233150 249 : LysAsnAlaPheLeuAsnSerIleGlyProAlaValGluLysHisLeuAsnValLeuT : 268 !:! !||| ! !!..!.!:!!||| ! !|||||| ! ||||||..!..!|||! ArgValAla---GlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeuA 233151 : AGAGTCGCG---CAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTAA : 233207 269 : hrPheIleSer : 271 !!:!:!:||| rgTyrLeuSer 233208 : GGTATTTGTCT : 233218 vulgar: gi|383850716|ref|XP_003700922.1| 16 271 . KQ414889.1 232456 233218 + 473 M 235 705 G 1 0 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232457 233218 473 + . gene_id 7 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232457 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232457 233218 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 232457 233218 473 + . alignment_id 7 ; Query gi|383850716|ref|XP_003700922.1| ; Align 232457 17 705 ; Align 233162 253 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 435 Query range: 16 -> 301 Target range: 217171 -> 219252 17 : AspTyrSerLeuGlnLeuAsnLysTrpLeuLeuIleThrIleGlyAlaTrpProSerT : 36 ::: |||:!!|||! !|||:::|||||||||! ! !!!!:||| !||||||!:!: AsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnS 217172 : aatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACT : 217229 37 : hrProSerThrThrLysIleGluLysIleValSerPheIleLeuIleValIleCysTy : 55 !!! !!!!||||||!:! !..!||||||:!!! ! :!::!!! !!.!:!!||||| erArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTy 217230 : CACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTA : 217286 56 : rCysThrIleLeuThrThrValLeuProSerIleLeuTyrValIleLeuAlaAspGlu : 74 | !! !||| ! ! ! !!:!!|||!!! !:!!||||||.!!|||! !! !||| rGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeuGluValGlu 217287 : CGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAA : 217343 75 : AspLeuGlnGlnLysLeuMetValMetGlyProLeuSerHisTrpPheIleGlyGlyI : 94 |||||| ! .!.||||||! :!!.!.|||||||||! ! !!! ! !!:!.! !: AspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValMetAlaPheV 217344 : GATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCG : 217403 95 : leAsnTyrThrThrLeuLeuLeuArgGlyLysGluIleGlnCysCysIleLysArgVa : 113 !!!!.||| !:!!|||:!!:!!!.! ! !!!:|||!:: |||:!:!:!|||:! alLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCysValArgArgIl 217404 : TCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAAT : 217460 114 : lGlnThrAspTrpArgThrValThrArgLeuAsnAspGlnLysIleMetMetArgAsn : 132 !:!! !|||||||||!.!|||! ! !! !!!.|||::!:!! |||!!: !||| eGluArgAspTrpArgAsnValArgCysGluLysAspArgGluAlaMetIleValAsn 217461 : CGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAAC : 217517 133 : AlaGluIleGlyArgTyrValValValCysCysThrAlaPheMetGlnGlyGlyValL : 152 |||.!..!!|||||| ! :!!|||:!! !|||||| !|||||| ! .!!||| : AlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheV 217518 : GCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcg : 217577 153 : euCysTyrCysValIleThrGlyPheThrThrGluValValGlnValGlyAsnGluTh : 171 :: ||| ::! !! ! !.!!!:!..!! ! !:!!! ! !! !|||! !!. alPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGluAsnGlyAs 217578 : ttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAA : 217634 172 : rArgThrValArgLeuLeuProCysAlaAlaTyrLysLysLeuIleProValAspThr : 190 !! !||| !!! !! !||| !! ! !! ! ||| ! :!!||| !..! ! ! nLeuThrPheIleProLeuValPheProPheThrLysTyrIleIleAspThrArgTyr 217635 : CCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTAC : 217691 191 : SerProThrAsnGluIleIleLeuPheValGlnPheLeuAlaGlyPheValValAsnS : 210 !!!|||||||||||||||:!:!!!|||:!!|||!!.:!!|||||| !:!!:!!:!!. ThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisG 217692 : ACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACG : 217751 211 : erThrThrValGlyAlaPheSerLeuAlaIleValPheAlaAlaHisAlaTyrGlyGl : 229 !!! !||| !!.!|||! !||||||||| !!.!||||||!.!||||||! !||||| lyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGl 217752 : GAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCA : 217808 230 : nLeuAspValLeuSerThrTrpIleThrGluPheValAsnGlnSerArgGluHisAsp : 248 |:!!!!:||||||! !!.!|||:!: !.!.!!.:!!:!! .!!|||! ! !! nIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAsp---GlyArgAlaAspMet 217809 : GATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGAC---GGTAGAGCGGATATG : 217862 249 : LysAsnAlaPheLeuAsnSerIleGlyProAlaValGluLysHisLeuAsnValLeu{ : 268 !..:!!.!! ! !..!!!!|||!.! ! !|||...:!!|||:!!...:!!|||{ SerAspThrValAspGlyArgIleAlaSerIleValSerGlnHisValArgIleLeu{ 217863 : AGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTA{ : 217922 269 : Th} >>>> Target Intron 1 >>>> {r}PheIleSerHisIleGluAspMe : 276 ! } 1229 bp {!}|||::::!!! !! !||| ! Ly}++ ++{s}PheLeuThrLeuThrGluArgTh 217923 : AA}gt.........................ag{a}tttttgaCGCTCACAGAGAGAAC : 219175 277 : tLeuThrGluMetCysPheLeuGluLeuPheGlnCysThrPheGlyIleCysLeuLeu : 295 ||| !:!!!!:! !||| !|||!!!.!. !||||||.!.! !|||||||||:!! rLeuGlnGlnIleSerPheAlaGluPheLeuGlyCysThrMetAspIleCysLeuVal 219176 : CCTCCAGCAAATCTCTTTCGCTGAATTTCTAGGATGCACCATGGACATATGTCTCGTT : 219232 296 : GlyTyrTyrValLeuLeu : 301 |||||||||:!!:!!:!! GlyTyrTyrIleIleVal 219233 : GGATATTACATTATCGTG : 219252 vulgar: gi|383850716|ref|XP_003700922.1| 16 301 . KQ414889.1 217171 219252 + 435 M 226 678 G 1 0 M 24 72 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217172 219252 435 + . gene_id 8 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217172 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217172 217923 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217172 219252 435 + . alignment_id 8 ; Query gi|383850716|ref|XP_003700922.1| ; Align 217172 17 678 ; Align 217850 244 72 ; Align 219154 269 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 415 Query range: 16 -> 300 Target range: 212869 -> 214558 17 : AspTyrSerLeuGlnLeuAsnLysTrpLeuLeuIleThrIleGlyAlaTrpProSerT : 36 ::: |||::: !! !|||:::|||||||||! ! !!! ||| !||||||..!! AsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspL 212870 : aatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACA : 212927 37 : hrProSerThrThrLysIleGluLysIleValSerPheIleLeuIleValIleCysTy : 55 ! !!! !..!:!! !|||||||||! !:!!:!! :!::!!! !..!:!!||||| ysSerTyrValSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTy 212928 : AGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTA : 212984 56 : rCysThrIleLeuThrThrValLeuProSerIleLeuTyrValIleLeuAlaAspGlu : 74 | !! !||| ! ! !|||:!!|||!!!! !|||||||||.!!|||! !! ||| rGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGlu 212985 : CGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgag : 213041 75 : AspLeuGlnGlnLysLeuMetValMetGlyProLeuSerHisTrpPheIleGlyGlyI : 94 :::::: :::::::!! :!!.!.||| !!!!:!! !!! ! !!.! ! AsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuT 213042 : aatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGT : 213101 95 : leAsnTyrThrThrLeuLeuLeuArgGlyLysGluIleGlnCysCysIleLysArgVa : 113 !!.||| !:!!|||:!!|||!.!||| ! !!:|||!:: |||:!!:!!!.!:! rpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMe 213102 : GGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATAT : 213158 114 : lGlnThrAspTrpArgThrValThrArgLeuAsnAspGlnLysIleMetMetArgAsn : 132 !:!! !||||||!:!!.!:!!|||!.! !.!.|||:!!:!!|||||| ! !||| tLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsn 213159 : GAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAAC : 213215 133 : AlaGluIleGlyArgTyrValValValCysCysThrAlaPheMetGlnGlyGlyValL : 152 |||....!!|||!:! :!!|||..! !|||.!! !|||||| ! !||| !! AlaSerPheGlyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheT 213216 : GCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCA : 213275 153 : euCysTyrCysValIleThrGlyPheThrThrGluValValGlnValGlyAsnGluTh : 171 !! !|||! !:!!:!!..! !.!!!:!.!!!!: !:!! !!.!! !:!! !. hrPheTyrPheLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAs 213276 : CGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAA : 213332 172 : rArgThrValArgLeuLeuProCysAlaAlaTyrLysLysLeuIleProValAspThr : 190 ! !||| !!|||! !:!! ! ! !!!.!! !:! :!!:!! !||| ! nValThrPheArgGlnMetValValProValSerArgPheIleValAspValArgTyr 213333 : CGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATAC : 213389 191 : SerProThrAsnGluIleIleLeuPheValGlnPheLeuAlaGlyPheValValAsnS : 210 ||||||..!|||||||||.!!!!!!!.:!!|||.!!:!!|||||| ! :!!:!!:!!: SerProValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisA 213390 : AGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATG : 213449 211 : erThrThrValGlyAlaPheSerLeuAlaIleValPheAlaAlaHisAlaTyrGlyGl : 229 !!! !.!!|||! !|||! !||||||||| !|||||||||!.!||||||! !||||| laIleAlaValValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGl 213450 : CTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACA : 213506 230 : nLeuAspValLeuSerThrTrpIleThrGluPheValAsnGlnSerArgGluHisAsp : 248 |:!!! !:!!|||! !!:!|||:!: !.!.!!.:!!:!! !!!..!!!: ..! nMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGlyArgGluAspMetSer 213507 : GATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGC : 213563 249 : LysAsnAlaPheLeuAsnSerIleGlyProAlaValGluLysHisLeuAsnValLeu{ : 268 ||||||!.! ! :!!!!!|||!.! ! !|||.!.:!!|||:!!...:!!|||{ LysAsnValAsp---AspArgIleAlaValIleValAsnGlnHisValArgIleLeu{ 213564 : AAGAATGTGGAC---GACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTG{ : 213620 269 : Th} >>>> Target Intron 1 >>>> {r}PheIleSerHisIleGluAspMe : 276 ! } 840 bp {!}|||:!!..!! !:!:||| ! Ly}++ ++{s}PheLeuGluLeuValGluLysAl 213621 : AA}gt.........................ag{A}TTCTTAGAGCTCGTGGAGAAAGC : 214484 277 : tLeuThrGluMetCysPheLeuGluLeuPheGlnCysThrPheGlyIleCysLeuLeu : 295 ||| !:!!:!:! !||| !||||||!!. !|||||| ! ..!:!!||||||:!! aLeuArgGlnValSerPheAlaGluLeuLeuValCysThrValAsnLeuCysLeuVal 214485 : ACTTCGGCAAGTATCTTTCGCTGAATTATTAGTATGCACGGTGAATCTCTGTCTCGTT : 214541 296 : GlyTyrTyrValLeu : 300 |||||||||:!!:!! GlyTyrTyrIleIle 214542 : GGATATTACATAATA : 214558 vulgar: gi|383850716|ref|XP_003700922.1| 16 300 . KQ414889.1 212869 214558 + 415 M 236 708 G 1 0 M 14 42 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212870 214558 415 + . gene_id 9 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212870 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 212870 213621 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214558 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214558 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212870 214558 415 + . alignment_id 9 ; Query gi|383850716|ref|XP_003700922.1| ; Align 212870 17 708 ; Align 213578 254 42 ; Align 214463 269 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 338 Query range: 302 -> 406 Target range: 272839 -> 273302 303 : TrpAlaLeuHisAspLeuGlnAsnMetValThrCysSerIleIleLeuPheSerMetS : 322 |||.!! !||||||!!!|||!:!:!:..!|||! !! !!!:||||||.!.||||||: TrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerMetT 272840 : TGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCATga : 272897 323 : erCysAsnIlePheValValCysPheIleGlyGluLysLeuSerGluGln >>>> T : 339 :: |||||||||:::||||||!:!|||||||||! !|||!!!|||::! hrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272898 : cttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt...... : 272950 340 : arget Intron 1 >>>> CysThrLysValGlyGluAlaValTyrMetThrGluT : 351 70 bp ||| |||:::||||||!.!||||||||||||.!.| ++CysLysLysIleGlyGluValValTyrMetThrAsnT 272951 : ...................agtgtaaaaaaattggcGAGGTAGTTTACATGACGAACT : 273054 352 : rpTyrHisLeuProGlyLysAspIleLeuAspLeuValLeuIleIleSerArgSerSe : 370 |||||:!!|||||||||||||||||||||||||||:!!|||||||||||||||!!!|| rpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCysSe 273055 : GGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATGCAG : 273111 371 : rValValThrLysIleThrAlaGlyLysIleValHisMetSerLeuTyrThrPheThr : 389 |||||||! !|||||||||||||||!:!||||||! !||||||:!!||||||||| ! rValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPheGly 273112 : TGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTCGGC : 273168 390 : Thr >>>> Target Intron 2 >>>> ValMetLysThrAlaPheAlaTyrIl : 399 ! 81 bp |||||||||!:!||||||||||||:! Asp++ ++ValMetLysSerAlaPheAlaTyrLe 273169 : GATgt.........................aggtGATGAAAAGTGCGTTCGCGTACTT : 273279 400 : eAsnValLeuArgGlnThrThr : 406 !|||:!!||||||||||||||| uAsnMetLeuArgGlnThrThr 273280 : AAATATGCTACGACAAACGACA : 273302 vulgar: gi|383850716|ref|XP_003700922.1| 302 406 . KQ414889.1 272839 273302 + 338 M 36 108 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272840 273302 338 + . gene_id 10 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272840 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272840 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272840 273302 338 + . alignment_id 10 ; Query gi|383850716|ref|XP_003700922.1| ; Align 272840 303 108 ; Align 273018 339 156 ; Align 273255 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 334 Query range: 9 -> 249 Target range: 226906 -> 227626 10 : ThrAspLeuAspSerLeuSerAspTyrSerLeuGlnLeuAsnLysTrpLeuLeuIleT : 29 !.!|||! !.!...!! !! !:!! |||:!!|||||||||:::|||||||||! ! AsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysP 226907 : AACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAAC : 226964 30 : hrIleGlyAlaTrpProSerThrProSerThrThrLysIleGluLysIleValSerPh : 48 !!:!!||| !|||||||||:!!! !!.!!:!:!!::!|||! !!:! ! !!|||!: roLeuGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTr 226965 : CACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTG : 227021 49 : eIleLeuIleValIleCysTyrCysThrIleLeuThrThrValLeuProSerIleLeu : 67 ::!::!! ! !!:!!||||||... !!!: ! ! !:!!:!! !!||| !||| pLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeu 227022 : GTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTG : 227078 68 : TyrValIleLeuAlaAspGluAspLeuGlnGlnLysLeuMetValMetGlyProLeuS : 87 ||||||:!!|||! !! :!!! ! ! ! .!.! !|||! :!!!!:||||||:!!| TyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetS 227079 : TACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGT : 227138 88 : erHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgGlyLysGluIl : 106 || !!:: !!:..! !:!!!!.|||:!!! !||| !!!!!.!! ! ! !!:|| erPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIl 227139 : CCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACAT : 227195 107 : eGlnCysCysIleLysArgValGlnThrAspTrpArgThrValThrArgLeuAsnAsp : 125 |! |||:!!:!!|||:!!:!! !||||||!:!!.!:!!! ! !|||.!.||| eLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAsp 227196 : TCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGAC : 227252 126 : GlnLysIleMetMetArgAsnAlaGluIleGlyArgTyrValValValCysCysThrA : 145 ::!!!.:!:|||:!!! ! !!||| ! !|||||| ! :!!:!!..! !|||||| ArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrP 227253 : AGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGT : 227312 146 : laPheMetGlnGlyGlyValLeuCysTyrCysValIleThrGlyPheThrThrGluVa : 164 !|||:!: ...... ::: ::: :!!:!!..! !.!!!.!.!!! ! hePheValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySe 227313 : TTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAG : 227369 165 : lValGlnValGlyAsnGluThrArgThrValArgLeuLeuProCysAlaAlaTyrLys : 183 !||| !..!! !:!!! !!.!!.!!:! !! !! !:!!|||! ! !! ! ||| rValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLys 227370 : TGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAA : 227426 184 : LysLeuIleProValAspThrSerProThrAsnGluIleIleLeuPheValGlnPheL : 203 ! :!! ! !||| ! !|||||| !|||||||||.!!!!!! |||||||||: IleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheV 227427 : ATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTG : 227486 204 : euAlaGlyPheValValAsnSerThrThrValGlyAlaPheSerLeuAlaIleValPh : 222 !!.!!|||.!!|||:!!:!!.!!..!||| !!.!|||! !|||:!!||| !:!!.! alThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLe 227487 : TAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCT : 227543 223 : eAlaAlaHisAlaTyrGlyGlnLeuAspValLeuSerThrTrpIleThrGluPheVal : 241 !|||!.!||||||! !||||||:!!!!:|||||| !:!!|||:!: !.!.!!.:!! uAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIle 227544 : TGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATC : 227600 242 : AsnGlnSerArgGluHisAspLys : 249 :!! !!! !!!: ..!||| AspGlyArgAlaAspMetSerLys 227601 : GACGGCAGAGCGGATATGAGCAAA : 227626 vulgar: gi|383850716|ref|XP_003700922.1| 9 249 . KQ414889.1 226906 227626 + 334 M 240 720 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226907 227626 334 + . gene_id 11 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226907 227626 . + . KQ414889.1 exonerate:protein2genome:local exon 226907 227626 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226907 227626 334 + . alignment_id 11 ; Query gi|383850716|ref|XP_003700922.1| ; Align 226907 10 720 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 256 Query range: 265 -> 402 Target range: 304930 -> 305816 266 : ValLeuThrPheIleSerHisIleGluAspMetLeuThrGluMetCysPheLeuGluL : 285 :!!! !! !||| :!! :!::!! :!!||| !|||:!:||||||||||||! IleTyrArgPheSerAlaIleValGlnThrValLeuGlnGluValCysPheLeuGluP 304931 : ATTTATAGATTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTTCTTGGAAT : 304988 286 : euPheGlnCysThrPheGlyIleCysLeuLeuGlyTyrTyrValLeuLeu >>>> T : 302 !!.!! ! !|||!!. !||||||||||||! !|||||| !:!! ! heIleGlySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysIleThr++ 304989 : TCATTGGTTCTACCTTACTGATATGTCTACTTGAATACTACTGTATAACGgt...... : 305041 303 : arget Intron 1 >>>> TyrTrpAlaLeuHisAspLeuGlnAsnMetValThrC : 314 62 bp !!|||! ! ! !:!! ! !:!:!:..!|||! ++AspTrpGluSerSerAsnThrValSerLeuThrThrT 305042 : ...................agGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACAT : 305137 315 : ysSerIleIleLeuPheSerMetSerCysAsnIlePheValValCysPheIleGlyGl : 333 !!!!:!::!!|||.!.|||:!:!!!! !|||||||||:!!:!!|||!:!|||||||| yrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGl 305138 : ATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGA : 305194 334 : uLysLeuSerGluGln >>>> Target Intron 2 >>>> CysThrLysValG : 343 |! |||! !|||:!! 413 bp !!!:!!..|||| uIleLeuMetGluLys++ ++SerSerSerValG 305195 : GATTCTTATGGAAAAGgt.........................agAGCAGTAGCGTTG : 305637 344 : lyGluAlaValTyrMetThrGluTrpTyrHisLeuProGlyLysAspIleLeuAspLe : 362 || !:!! !!:!|||! !...||||||||||||||| !||| |||! !! !|| lyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGlyLe 305638 : GATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCT : 305694 363 : uValLeuIleIleSerArgSerSerValValThrLysIleThrAlaGlyLysIleVal : 381 |:!!|||||||||:!!! !|||||| ! !.!!||||||!:!|||||||||:!!||| uIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysValVal 305695 : TATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTT : 305751 382 : HisMetSerLeuTyrThrPheThrThrValMetLysThrAlaPheAlaTyrIleAsnV : 401 !!:!:||||||! !|||||| !!.!|||! ! ! :::::: |||:::: AspLeuSerLeuSerThrPheGlyAsnValSerTyrTyrGlnTyrSerAsnIleSerI 305752 : GATTTATCTTTATCCACATTTGGAAACGTGAGTTACTATcaatattccaatatttcaa : 305811 402 : alLeu : 402 ::::: leVal 305812 : ttgtt : 305816 vulgar: gi|383850716|ref|XP_003700922.1| 265 402 . KQ414889.1 304930 305816 + 256 M 36 108 5 0 2 I 0 58 3 0 2 M 37 111 5 0 2 I 0 409 3 0 2 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304931 305816 256 + . gene_id 12 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 304931 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304931 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 0 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305816 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305816 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304931 305816 256 + . alignment_id 12 ; Query gi|383850716|ref|XP_003700922.1| ; Align 304931 266 108 ; Align 305101 302 111 ; Align 305625 339 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 246 Query range: 337 -> 405 Target range: 264723 -> 265007 338 : GlnCysThrLysValGlyGluAlaValTyrMetThrGluTrpTyrHisLeuProGlyL : 357 ||||||! !||||||||||||!.!|||||||||:!!.!.||||||:!!|||||| !| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 358 : ysAspIleLeuAspLeuValLeuIleIleSerArgSerSerValValThrLysIleTh : 376 |||||||||||||||||:!!|||||||||! !||||||||||||||| !|||.!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 377 : rAlaGlyLysIleValHisMetSerLeuTyrThrPheThrThr >>>> Target I : 391 |||||||||||||:!!|||||||||:!!|||||||||!:! ! 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 392 : ntron 1 >>>> ValMetLysThrAlaPheAlaTyrIleAsnValLeuArgGlnTh : 405 bp |||!!:|||:!!:!!|||.!!|||:!!|||:!!||||||||||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArgGlnTh 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGCCAAAC : 265005 406 : r : 405 | r 265006 : G : 265007 vulgar: gi|383850716|ref|XP_003700922.1| 337 405 . KQ414889.1 264723 265007 + 246 M 53 159 5 0 2 I 0 76 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265007 246 + . gene_id 13 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265007 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265007 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265007 246 + . alignment_id 13 ; Query gi|383850716|ref|XP_003700922.1| ; Align 264724 338 159 ; Align 264963 391 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 245 Query range: 337 -> 404 Target range: 238625 -> 238915 338 : GlnCysThrLysValGlyGluAlaValTyrMetThrGluTrpTyrHisLeuProGlyL : 357 |||||| !||||||||||||!.!||||||||||||!!:||||||:!!|||||| !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 358 : ysAspIleLeuAspLeuValLeuIleIleSerArgSerSerValValThrLysIleTh : 376 :! ||||||||||||:!!|||||||||!.!||||||!:!||||||..!|||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 377 : rAlaGlyLysIleValHisMetSerLeuTyrThrPheThrThr >>>> Target I : 391 ||||||||||:!!:!!||||||||||||||||||||| ! ! 89 rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAsp++ 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATgt............. : 238787 392 : ntron 1 >>>> ValMetLysThrAlaPheAlaTyrIleAsnValLeuArgGln : 404 bp |||:!:||||||!.!|||||||||!!:|||:!!||| !!||| ++ValValLysThrGlyPheAlaTyrMetAsnMetLeuCysGln 238788 : ............agGTAGTAAAAACAGGATTCGCCTACATGAATATGCTTTGTCAA : 238915 vulgar: gi|383850716|ref|XP_003700922.1| 337 404 . KQ414889.1 238625 238915 + 245 M 53 159 5 0 2 I 0 85 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238915 245 + . gene_id 14 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 238626 238784 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238784 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238785 238786 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238785 238873 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 238872 238873 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238874 238915 . + . KQ414889.1 exonerate:protein2genome:local exon 238874 238915 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238915 245 + . alignment_id 14 ; Query gi|383850716|ref|XP_003700922.1| ; Align 238626 338 159 ; Align 238874 391 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 244 Query range: 337 -> 404 Target range: 254271 -> 254561 338 : GlnCysThrLysValGlyGluAlaValTyrMetThrGluTrpTyrHisLeuProGlyL : 357 |||||| !||||||||||||!.!||||||||||||!!:||||||:!!|||||| !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 358 : ysAspIleLeuAspLeuValLeuIleIleSerArgSerSerValValThrLysIleTh : 376 :! ||||||||||||:!!|||||||||!!!||||||!:!||||||..!:!!||||| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 377 : rAlaGlyLysIleValHisMetSerLeuTyrThrPheThrThr >>>> Target I : 391 ||||||||||||| ||||||||||||||||||||| ! ! 89 rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt............. : 254433 392 : ntron 1 >>>> ValMetLysThrAlaPheAlaTyrIleAsnValLeuArgGln : 404 bp |||:!:||||||!.!|||||||||:!:|||:!!||| !!||| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGln 254434 : ............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAA : 254561 vulgar: gi|383850716|ref|XP_003700922.1| 337 404 . KQ414889.1 254271 254561 + 244 M 53 159 5 0 2 I 0 85 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254561 244 + . gene_id 15 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254272 254430 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254430 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254431 254432 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254431 254519 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254518 254519 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254520 254561 . + . KQ414889.1 exonerate:protein2genome:local exon 254520 254561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254561 244 + . alignment_id 15 ; Query gi|383850716|ref|XP_003700922.1| ; Align 254272 338 159 ; Align 254520 391 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 209 Query range: 336 -> 406 Target range: 283273 -> 283567 337 : GluGlnCysThrLysValGlyGluAlaValTyrMetThrGluTrpTyrHisLeuProG : 356 ..!||||||! !||||||||||||!.!||||||||||||.!.! !!:!:!!||||||! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 357 : lyLysAspIleLeuAspLeuValLeuIleIleSerArgSerSerValValThrLysIl : 375 !||||||||||||:!!|||:!!|||||||||||||||||||||:::||| ||||| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 376 : eThrAlaGlyLysIleValHisMetSerLeuTyrThrPheThrThr >>>> Targe : 391 |||||||...|||::::::...|||||| !||||||||| ! ! eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAsp++ 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATgt.......... : 283438 392 : t Intron 1 >>>> ValMetLysThrAlaPheAlaTyrIleAsnValLeuArgGl : 404 84 bp !.!!!::!!|||.!!|||||||||:::|||:::|||||| ! ++AlaIleGluThrThrPheAlaTyrLeuAsnIleLeuArg** 283439 : ...............agGCAATAGAAACCACTTTCgcgtatttaaatattctacgCTA : 283559 405 : nThrThr : 406 !|||||| *ThrThr 283560 : AACGACG : 283567 vulgar: gi|383850716|ref|XP_003700922.1| 336 406 . KQ414889.1 283273 283567 + 209 M 54 162 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283567 209 + . gene_id 16 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 283274 283435 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283435 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 283436 283437 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 283436 283519 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 283518 283519 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 283520 283567 . + . KQ414889.1 exonerate:protein2genome:local exon 283520 283567 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283567 209 + . alignment_id 16 ; Query gi|383850716|ref|XP_003700922.1| ; Align 283274 337 162 ; Align 283520 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 208 Query range: 336 -> 396 Target range: 277548 -> 277728 337 : GluGlnCysThrLysValGlyGluAlaValTyrMetThrGluTrpTyrHisLeuProG : 356 ..!||||||! !||||||||||||!.!||||||||||||.!.||||||:!!||||||! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 357 : lyLysAspIleLeuAspLeuValLeuIleIleSerArgSerSerValValThrLysIl : 375 !||||||||||||:!!|||:!!|||||||||||||||||||||:::||| ||||| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 376 : eThrAlaGlyLysIleValHisMetSerLeuTyrThrPheThrThrValMetLysThr : 394 |||||||||||||::::::...||||||:!!||||||||| ! !||| ..! ! eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspValArgSerLeu 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTACGTTCACTT : 277720 395 : AlaPhe : 396 !||| LeuPhe 277721 : CTTTTT : 277728 vulgar: gi|383850716|ref|XP_003700922.1| 336 396 . KQ414889.1 277548 277728 + 208 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277728 208 + . gene_id 17 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277549 277728 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277728 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277728 208 + . alignment_id 17 ; Query gi|383850716|ref|XP_003700922.1| ; Align 277549 337 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 207 Query range: 337 -> 394 Target range: 244655 -> 244826 338 : GlnCysThrLysValGlyGluAlaValTyrMetThrGluTrpTyrHisLeuProGlyL : 357 |||||| !||||||||||||!.!||||||||||||!!:||||||:!!|||||| !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 358 : ysAspIleLeuAspLeuValLeuIleIleSerArgSerSerValValThrLysIleTh : 376 :! ||||||||||||:!!|||||||||!.!||||||!:!:!!|||..!:!!||||| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 377 : rAlaGlyLysIleValHisMetSerLeuTyrThrPheThrThrValMetLysThr : 394 ||||||||||:!!:!!||||||||||||||||||||| ! !|||! :!!||| rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThr 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 244826 vulgar: gi|383850716|ref|XP_003700922.1| 337 394 . KQ414889.1 244655 244826 + 207 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244826 207 + . gene_id 18 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244826 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244826 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244826 207 + . alignment_id 18 ; Query gi|383850716|ref|XP_003700922.1| ; Align 244656 338 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 189 Query range: 335 -> 391 Target range: 234979 -> 235147 336 : SerGluGlnCysThrLysValGlyGluAlaValTyrMetThrGluTrpTyrHisLeuP : 355 !!!:!!||||||||||||||||||||| !|||||||||||||||||||||!..|||| ThrGlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuP 234980 : ACTCAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTAC : 235037 356 : roGlyLysAspIleLeuAspLeuValLeuIleIleSerArgSerSerValValThrLy : 374 || !||| ! !|||! !||||||:!!||||||||||||||||||:!!|||! !|| roHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLy 235038 : CTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAA : 235094 375 : sIleThrAlaGlyLysIleValHisMetSerLeuTyrThrPheThrThrVal : 391 ||||||||||||||||.!!:!!!!.||||||:!! |||||| ! !||| sIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235095 : AATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: gi|383850716|ref|XP_003700922.1| 335 391 . KQ414889.1 234979 235147 + 189 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234980 235147 189 + . gene_id 19 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234980 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234980 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234980 235147 189 + . alignment_id 19 ; Query gi|383850716|ref|XP_003700922.1| ; Align 234980 336 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 338 -> 406 Target range: 280276 -> 280551 339 : CysThrLysValGlyGluAlaValTyrMetThrGluTrpTyrHisLeuProGlyLysA : 358 ||| !|||||||||! !:!!..!||||||! !!!:||||||!.!|||||||||||| CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysL 280277 : TGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGA : 280334 359 : spIleLeuAspLeuValLeuIleIleSerArgSerSerValValThrLysIleThrAl : 377 ! !! !! !|||:!!||||||.!!:!! !|||!:! ! !! !|||:!!||||| ysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 280335 : AAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 280391 378 : aGlyLysIleValHisMetSerLeuTyrThrPheThrThr >>>> Target Intr : 391 ||||||||||:!! !!:!:|||||| !!:!||| !!:! 71 bp aGlyLysIleIleAspLeuSerLeuSerSerPheCysSer++ 280392 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt................ : 280435 392 : on 1 >>>> ValMetLysThrAlaPheAlaTyrIleAsnValLeuArgGlnThrTh : 406 |||:!:||||||||||||||||||:!:!:!:!!|||||| ! !|| ++ValLeuLysThrAlaPheAlaTyrLeuSerLeuLeuArgThrLeuTh 280436 : .........agGTGTTAAAAACGGCATTCGCATATCTGAGCTTATTACGTACGCTTAC : 280549 407 : r : 406 | r 280550 : C : 280551 vulgar: gi|383850716|ref|XP_003700922.1| 338 406 . KQ414889.1 280276 280551 + 175 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280277 280551 175 + . gene_id 20 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280551 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280277 280551 175 + . alignment_id 20 ; Query gi|383850716|ref|XP_003700922.1| ; Align 280277 339 156 ; Align 280504 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 294 -> 393 Target range: 297439 -> 297809 295 : LeuGlyTyrTyrValLeuLeuTyrTrpAlaLeuHisAspLeuGlnAsnMetValThrC : 314 ||| |||::: ... ||| ! !||||||:!! ! !|||||| LeuLysTyrHisPhePheGlnGlyTrpLysThrHisAspMetIlePheGlyValThrI 297440 : ttaaaatatcatttttttcaggGATGGAAAACTCACGATATGATTTTTGGGGTAACGA : 297497 315 : ysSerIleIleLeuPheSerMetSerCysAsnIlePheValValCysPheIleGlyGl : 333 !.!! !.!!:!!.!!|||!!:!!!! !||||||||||||:!!||| ! !||||| leGlyGlyPheMetLeuSerIleThrPheAsnIlePheValLeuCysHisAlaGlyGl 297498 : TCGGCGGTTTCATGCTTTCGATCACTTTTAATATATTCGTATTATGTCATGCAGGTGA : 297554 334 : uLysLeuSerGluGln >>>> Target Intron 1 >>>> CysThrLysValG : 343 | ||| !|||:!! 73 bp ..! !||| !!| uLeuLeuValGluGlu++ ++AlaGluLysPheG 297555 : ACTTCTTGTCGAGGAGgt.........................agGCTGAAAAATTCG : 297657 344 : lyGluAlaValTyrMetThrGluTrpTyrHisLeuProGlyLysAspIleLeuAspLe : 362 ||.!.|||!.!|||! ! !|||||||||:!!|||||| !!!. !|||||||| lyAsnAlaAlaTyrAsnIleGluTrpTyrAsnLeuProProAsnArgAlaLeuAspLe 297658 : GCAATGCAGCTTATAACATCGAATGGTACAACTTACCGCCAAACAGGGCTCTCGATCT : 297714 363 : uValLeuIleIleSerArgSerSerValValThrLysIleThrAlaGlyLysIleVal : 381 |||||||!!:|||.!!! !:!!!.! !! ! !!!:!:!!|||...||||||||| uValLeuMetIleGlyIleAlaLysPheProProArgLeuThrGlyGlyLysIlePhe 297715 : GGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCACAggtggaaaaatattc : 297771 382 : HisMetSerLeuTyrThrPheThrThrValMetLys : 393 :::|||:!! !!||||||!:!.!!||| !:: AspIleSerIleAsnThrPheSerAlaValArgArg 297772 : gatatatCGATAAACACGTTCAGTGCCGTACGTAga : 297809 vulgar: gi|383850716|ref|XP_003700922.1| 294 393 . KQ414889.1 297439 297809 + 172 M 44 132 5 0 2 I 0 69 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297440 297809 172 + . gene_id 21 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 297440 297571 . + . KQ414889.1 exonerate:protein2genome:local exon 297440 297571 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 297572 297573 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 297572 297644 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 297643 297644 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 297645 297809 . + . KQ414889.1 exonerate:protein2genome:local exon 297645 297809 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297440 297809 172 + . alignment_id 21 ; Query gi|383850716|ref|XP_003700922.1| ; Align 297440 295 132 ; Align 297645 339 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 330 -> 405 Target range: 230223 -> 230448 331 : IleGlyGluLysLeuSerGluGlnCysThrLysValGlyGluAlaValTyrMetThrG : 350 ||| :::... ||| !||||||! !|||||||||||| ! !||||||! !| Ile***LysAsnAlaSerLeuGlnCysArgLysValGlyGluLysSerTyrMetIleG 230224 : atttaaaaaaatgcttcCTTACAGTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCG : 230281 351 : luTrpTyrHisLeuProGlyLysAspIleLeuAspLeuValLeuIleIleSerArgSe : 369 ||||||||!..||| !!|||!!. ! ! ||| !! !:!!|||||||||:!!! !|| luTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 230282 : AATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTC : 230338 370 : rSerValValThrLysIleThrAlaGlyLysIleValHisMetSerLeuTyrThrPhe : 388 |!:! ! !||||||.!!|||||||||!!.!!:|||.!.:!:|||:!! !!|||||| rAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnThrPhe 230339 : CAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACACTTTC : 230395 389 : ThrThrValMetLysThrAlaPheAlaTyrIleAsnValLeuArgGlnThr : 405 !:! !|||! ! ! ! !! !!.!|||! ||| !! !!:! !||| SerAspValSerIleIlePheSerValTyrThrAsnProSerLysLeuThr 230396 : AGCGACGTAAGTATCATATTCTCTGTTTACACGAATCCATCGAAATTAACT : 230448 vulgar: gi|383850716|ref|XP_003700922.1| 330 405 . KQ414889.1 230223 230448 + 141 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230224 230448 141 + . gene_id 22 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230224 230448 . + . KQ414889.1 exonerate:protein2genome:local exon 230224 230448 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230224 230448 141 + . alignment_id 22 ; Query gi|383850716|ref|XP_003700922.1| ; Align 230224 331 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 338 -> 401 Target range: 287063 -> 287252 339 : CysThrLysValGlyGluAlaValTyrMetThrGluTrpTyrHisLeuProGlyLysA : 358 ||| !||||||||| !:!!..!||||||! !!!:||||||!.!|||||||||||| CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysT 287064 : tGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAA : 287121 359 : spIleLeuAspLeuValLeuIleIleSerArgSerSerValValThrLysIleThrAl : 377 !! !! !|||:!!||||||.!!:!! !|||!:! ! !! !|||:!!||||| hrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 287122 : CAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 287178 378 : aGlyLysIleValHisMetSerLeuTyrThrPheThrThrValMetLysThrAlaPhe : 396 ||||||||||:!! !!:!:|||||| !!:!||| !!:!|||! ! ! ! !!!. aGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeu 287179 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTA : 287235 397 : AlaTyrIleAsnVal : 401 :!!||| !:!!:!! SerTyrTyrHisLeu 287236 : TCCTATTATCATTTG : 287252 vulgar: gi|383850716|ref|XP_003700922.1| 338 401 . KQ414889.1 287063 287252 + 136 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287064 287252 136 + . gene_id 23 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287064 287252 136 + . alignment_id 23 ; Query gi|383850716|ref|XP_003700922.1| ; Align 287064 339 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 338 -> 391 Target range: 301877 -> 302036 339 : CysThrLysValGlyGluAlaValTyrMetThrGluTrpTyrHisLeuProGlyLysA : 358 |||!:!:!!:!!|||..!||| !||| !! !!!:||||||:!!||||||!.!||| CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysA 301878 : TGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGA : 301935 359 : spIleLeuAspLeuValLeuIleIleSerArgSerSerValValThrLysIleThrAl : 377 !! !||||||:!!|||:!!! ! !! !|||..! ! ! !!|||:!!||||| rgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAl 301936 : GAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGC : 301992 378 : aGlyLysIleValHisMetSerLeuTyrThrPheThrThrVal : 391 ||||||||||:!! !!:!:|||||| !!||||||!:!:!!||| aGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301993 : AGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: gi|383850716|ref|XP_003700922.1| 338 391 . KQ414889.1 301877 302036 + 129 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301878 302036 129 + . gene_id 24 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301878 302036 129 + . alignment_id 24 ; Query gi|383850716|ref|XP_003700922.1| ; Align 301878 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 337 -> 394 Target range: 211770 -> 211941 338 : GlnCysThrLysValGlyGluAlaValTyrMetThrGluTrpTyrHisLeuProGlyL : 357 ||| ..!|||||||||||| ! !||||||! !!!:||||||!..:!!||||||| GlnThrValLysValGlyGluLysSerTyrMetIleAspTrpTyrArgMetProGlyL 211771 : CAGACAGTAAAAGTTGGAGAAAAGTCTTACATGATCGACTGGTATCGAATGCCAGGAA : 211828 358 : ysAspIleLeuAspLeuValLeuIleIleSerArgSerSerValValThrLysIleTh : 376 || ! !|||! !:!! !|||!!:||||||! !||| ! !..!||||||||||| ysLysGlyLeuValValProLeuMetIleSerMetSerHisSerThrThrLysIleTh 211829 : AGAAAGGTTTGGTCGTACCCTTGATGATCTCCATGTCACATTCGACCACCAAAATCAC : 211885 377 : rAlaGlyLysIleValHisMetSerLeuTyrThrPheThrThrValMetLysThr : 394 |||||||!!.:!!:!! !:!:|||:!! !!:!||| ! !|||! ||| rAlaGlyAsnLeuIleValLeuSerIleSerSerPheGlyAspValSerValThr 211886 : CGCTGGCAATCTCATCGTTCTTTCAATCAGTAGTTTCGGTGACGTAAGtgttaca : 211941 vulgar: gi|383850716|ref|XP_003700922.1| 337 394 . KQ414889.1 211770 211941 + 127 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 211771 211941 127 + . gene_id 25 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 211771 211941 . + . KQ414889.1 exonerate:protein2genome:local exon 211771 211941 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 211771 211941 127 + . alignment_id 25 ; Query gi|383850716|ref|XP_003700922.1| ; Align 211771 338 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 184 -> 249 Target range: 202712 -> 202907 185 : LeuIleProValAspThrSerProThrAsnGluIleIleLeuPheValGlnPheLeuA : 204 :!!||| !||| !||||||..!|||||||||.!!!!!! :!!!:!.!!:!!| IleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleValA 202713 : ATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAG : 202770 205 : laGlyPheValValAsnSerThrThrValGlyAlaPheSerLeuAlaIleValPheAl : 223 ||! !.!!:!!:!!:!!.!!..!||||||||||||! !!!!|||.!! :!!||||| laValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAl 202771 : CTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGC : 202827 224 : aAlaHisAlaTyrGlyGlnLeuAspValLeuSerThrTrpIleThrGluPheValAsn : 242 |!.!|||! !! !||||||:!!|||||||||! !.!!|||:!: !.!.!!.:!!:!! aValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMetAsp 202828 : GGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGAT : 202884 243 : GlnSerArgGluHisAspLys : 249 !! !!!: ..!||| GlyArgSerAspMetSerLys 202885 : GGTCGTTCGGATATGAGTAAA : 202907 vulgar: gi|383850716|ref|XP_003700922.1| 184 249 . KQ414889.1 202712 202907 + 115 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202713 202907 115 + . gene_id 26 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202713 202907 . + . KQ414889.1 exonerate:protein2genome:local exon 202713 202907 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202713 202907 115 + . alignment_id 26 ; Query gi|383850716|ref|XP_003700922.1| ; Align 202713 185 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 337 -> 400 Target range: 292389 -> 292578 338 : GlnCysThrLysValGlyGluAlaValTyrMetThrGluTrpTyrHisLeuProGlyL : 357 ||| !!!:!:!!:!!!.!.!.||| !||| ||||||||||||:!!|||||| !!: GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 358 : ysAspIleLeuAspLeuValLeuIleIleSerArgSerSerValValThrLysIleTh : 376 :! ! !! !|||:!!||||||:!::!!:!!! !!!!!.! ! !! !|||:!!|| rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 377 : rAlaGlyLysIleValHisMetSerLeuTyrThrPheThrThrValMetLysThrAla : 395 ||||||||||||| !! !:!:|||||| !!|||||| !.!!||| :!!:!! ! rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSerLys 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCAAAA : 292561 396 : PheAlaTyrIleAsn : 400 .!.!.!! |||:!! LeuValLeuIleHis 292562 : CTAGTCTTGATACAC : 292578 vulgar: gi|383850716|ref|XP_003700922.1| 337 400 . KQ414889.1 292389 292578 + 115 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 292578 115 + . gene_id 27 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292390 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 292578 115 + . alignment_id 27 ; Query gi|383850716|ref|XP_003700922.1| ; Align 292390 338 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 261 -> 300 Target range: 286678 -> 286795 262 : LysHisLeuAsnValLeuThrPheIleSerHisIleGluAspMetLeuThrGluMetC : 281 ||| ! !!..:!!!!!!:!|||||||||!!.||||||! :!:|||!.!|||!!:| LysIleArgThrIlePheSerPheIleSerGlnIleGluGlyLeuLeuAsnGluIleC 286679 : AAAATACGAACGATTTTCAGTTTTATATCGCAAATCGAGGGGCTCCTAAACGAAATAT : 286736 282 : ysPheLeuGluLeuPheGlnCysThrPheGlyIleCysLeuLeuGlyTyrTyrValLe : 300 |||||:!!|||:!!.!! ||||||!!...!||||||!!!||||||||||||:!!|| ysPheValGluValIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLe 286737 : GTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTACT : 286793 301 : u : 300 | u 286794 : G : 286795 vulgar: gi|383850716|ref|XP_003700922.1| 261 300 . KQ414889.1 286678 286795 + 114 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286679 286795 114 + . gene_id 28 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 286679 286795 . + . KQ414889.1 exonerate:protein2genome:local exon 286679 286795 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286679 286795 114 + . alignment_id 28 ; Query gi|383850716|ref|XP_003700922.1| ; Align 286679 262 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 341 -> 391 Target range: 206251 -> 206401 342 : ValGlyGluAlaValTyrMetThrGluTrpTyrHisLeuProGlyLysAspIleLeuA : 361 |||||| !.!! !! !! !..!.!.||||||!.!||||||..!!:! !! ! !. ValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgS 206252 : GTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCT : 206309 362 : spLeuValLeuIleIleSerArgSerSerValValThrLysIleThrAlaGlyLysIl : 380 .!:!!:!!|||||||||:!!! !|||!:! ! !! !|||:!!||||||||||||!! erMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMe 206310 : CTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAAT : 206366 381 : eValHisMetSerLeuTyrThrPheThrThrVal : 391 : !!.!.||||||||| !!:!|||||| !||| tPheGluMetSerLeuAlaSerPheThrAspVal 206367 : GTTCGAAATGTCTTTAGCTAGTTTCACCGATGTA : 206401 vulgar: gi|383850716|ref|XP_003700922.1| 341 391 . KQ414889.1 206251 206401 + 100 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206252 206401 100 + . gene_id 29 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206252 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206252 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206252 206401 100 + . alignment_id 29 ; Query gi|383850716|ref|XP_003700922.1| ; Align 206252 342 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1209 Query range: 1 -> 404 Target range: 256610 -> 258738 2 : GluProSerIleIleArgThrAspLeuAspSerLeuPheAspTyrSerLeuGlnLeuA : 21 ||| !:!!:!::!!!:!|||:!!!!! ! |||! ! !||||||||||||||||||| GluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerLeuGlnLeuA 256611 : GAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGA : 256668 22 : snLysTrpLeuLeuIleProIleGlyAlaTrpPro<-><->SerThrThrSerLysIl : 38 ||::!|||!!!|||! !|||||||||||||||||| |||:!!|||!!!! :! snArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerThrThrThrLe 256669 : ATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCT : 256725 39 : eGluArgValValSerLeuIleLeuIleValValSerTyrCysSerIleLeuThrThr : 57 !|||||| !||||||:!!:!!|||! !:!!|||!!!||| !!||||||||| !||| uGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIleLeuPheThr 256726 : CGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTCACC : 256782 58 : ValValProCysIleLeuTyrValIleLeuAspAspAspLeuLeuThrGlnLysLeuM : 77 :!!:!!||||||:!:|||:!!|||.!!|||||||||||| !!!! ...|||::: LeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrMetLysValL 256783 : TTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAcatgaaagtga : 256842 78 : etMetValGlyProLeuSerHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLe : 96 ||||||:!!|||||||||.!!|||.!! !! !||||||||| !||||| ysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrThrLeuLeuLe 256843 : aaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTT : 256899 97 : uLeuArgLysLysGluIleGlnCysCysValLysHisIleHisMetGlnThrAspTrp : 115 ||||!:! !|||!!:|||!::! !||||||:!!|||||| :!!||||||||| uLeuGlnGlyLysAspIleArgTyrCysValGluHisIle------GluThrAspTrp 256900 : GTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATA------GAAACGGATTGG : 256950 116 : ArgSerValThrLysSerLysAspGlnGluIleMetLeuLysAspAlaGluPheGlyA : 135 |||! !|||! !!:!..!|||||||||:!!:!:|||:!!|||:!!|||..!||||||| ArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheGlyA 256951 : AGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCGGTC : 257010 136 : rgTyrValValIlePheCysThrAlaPheMetGlnGlyGlyValLeuCysTyrCysVa : 154 ||||||||!.!! !||||||.!!|||.!!||||||.!!||||||...|||::: || rgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePheVa 257011 : GTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttcttcgt : 257067 155 : lIleThrGlyPheThrThrGluValIleGlnValGlyAsnGluThrArgThrIleArg : 173 | :!!!.!.!.!.!||||||:!!|||!!.|||||||||||||||! !! !:!:||| lSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleValArg 257068 : GTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTGCGA : 257124 174 : MetLeuProCysAlaAlaTyrLysLysLeuIleProValAspThrSerProThrAsnG : 193 :!!|||||| !.!!!.!||||||||||||:!: !|||||| !||||||||||||| ValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrAsnG 257125 : GTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACG : 257184 194 : luIleIleLeuPheValGlnPheLeuAlaGlyPheIleValAsnSerSerThrValGl : 212 |||||:!::!!|||:!!||| !! !:!!..!.!!|||!.!!.!!!!|||||||||.! luIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrValSe 257185 : AGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAG : 257241 213 : yAlaPheSerLeuAlaIleValPheAlaAlaHisAlaTyrGlyGlnLeuAsnValLeu : 231 ! !|||||||||||| !|||||||||.!!||||||||||||||||||!.!|||||| rIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrValLeu 257242 : TATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTT : 257298 232 : IleThrTrpIleArgGluLeuValAsnGluSerArgGlyArgAspArgAsnValTyrL : 251 !!::!!||||||! !|||!!!|||||||||||||||..!|||::::::... . MetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheProP 257299 : ATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttcctt : 257358 252 : euLysGluIleGlyValValValAspAsnHisLeuArgAlaLeu{Se} >>>> Tar : 266 .!|||:!!|||||||||:!!|||!!::!!|||||||||!.!|||{||} heLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Se}++ 257359 : tCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt........ : 257407 267 : get Intron 1 >>>> {r}PheIleSerTyrIleGluAspMetMetThrGluIle : 278 76 bp {|}||||||||||||||||||!!::!!|||!.!..!||| ++{r}PheIleSerTyrIleGluGluValMetAsnArgIle 257408 : .................ag{T}TTCATATCATATATCGAGGAAGTGATGAACCGAATA : 257515 279 : CysPheLeuGluLeuPheLysCysThrPheAsnIleCysMetLeuGlyTyrTyrValL : 298 ||||||||||||||||||!:!||||||.!. !|||||||||||||||||||||:!!| CysPheLeuGluLeuPheArgCysThrLeuAlaIleCysMetLeuGlyTyrTyrIleL 257516 : TGTTTTTTAGAGTTGTTTAGATGCACGCTGGCTATATGCATGCTGGGATACTACATTC : 257575 299 : euMet >>>> Target Intron 2 >>>> HisTrpAlaAsnArgAspTyrGln : 307 || ! 684 bp ...|||:!!!..!::||| ||| euAla++ ++GluTrpSerThrGlnAspIleGln 257576 : TTGCGgt.........................aggaATGGTCTACGCaagatattcaa : 258286 308 : AsnMetThrIleCysValValIleLeuCysSerMetAlaPheAsnIlePheIleValC : 327 |||:::::: ! !!:!!|||||| |||::::::||||||||||||::::::| AsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValIleC 258287 : aatttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaatat : 258346 328 : ysTyrIleGlyGluLysLeuSerGluGln >>>> Target Intron 3 >>>> : 337 ||||||||||||||! !|||!!!|||||| 90 bp ysTyrIleGlyGluIleLeuThrGluGln++ ++ 258347 : gttACATAGGTGAAATATTAACAGAACAGgt.........................ag : 258464 338 : CysLysAsnValGlyAspSerValTyrMetThrAsnTrpTyrTyrLeuProAspLysH : 356 ||||||!!.||||||||| !||||||||||||:!!|||||||||||||||||||||. CysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspLysA 258465 : TGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAAA : 258523 357 : isIleLeuAspLeuLeuLeuIleIleSerArgSerSerThrValIleLysMetThrAl : 375 ..||||||||||||:!!|||:!!|||:!!|||||||||..!|||:!!:!!!!:||||| rgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleThrAl 258524 : GAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGC : 258580 376 : aGlyLysPheValThrMetSerIleTyrThrPheAlaSer >>>> Target Intr : 389 |||||||||| ||||||||||||||||||::!..! 69 bp aGlyLysPhePheHisMetSerIleTyrThrPheSerAsp++ 258581 : GggaaaattctttcacatGTCCATTTACACATTCAGCGATgt................ : 258624 390 : on 4 >>>> ValValLysThrAlaPheAlaTyrLeuAsnValLeuArgGlnThrTh : 404 |||:!!||||||:!!|||||||||||||||:!!|||||||||..!:! ++ValIleLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnValSe 258625 : .........agGTAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGTATC : 258736 405 : r : 404 ! r 258737 : G : 258738 vulgar: gi|383850718|ref|XP_003700923.1| 1 404 . KQ414889.1 256610 258738 + 1209 M 31 93 G 0 6 M 77 231 G 2 0 M 154 462 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256611 258738 1209 + . gene_id 1 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256611 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256611 257404 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256611 258738 1209 + . alignment_id 1 ; Query gi|383850718|ref|XP_003700923.1| ; Align 256611 2 93 ; Align 256710 33 231 ; Align 256941 112 462 ; Align 257482 267 99 ; Align 258265 300 111 ; Align 258466 337 156 ; Align 258691 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1170 Query range: 4 -> 404 Target range: 259739 -> 262201 5 : IleIleArgThrAspLeuAspSerLeuPheAspTyrSerLeuGlnLeuAsnLysTrpL : 24 .!!:!!..!|||..!!!! !|||! ! !|||||||||||||||!!!|||::!|||! PheValGluThrSerPheThrSerHisSerAspTyrSerLeuGlnPheAsnArgTrpP 259740 : TTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCCAATTTAATCGATGGT : 259797 25 : euLeuIleProIleGlyAlaTrpPro<-><->SerThrThrSerLysIleGluArgVa : 41 !!|||! !|||||||||||||||||| |||:!!|||!!!!:!:!!|||!:!:! heLeuLysProIleGlyAlaTrpProProSerSerSerThrThrArgLeuGluLysIl 259798 : TCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCACGACCAGACTCGAGAAGAT : 259854 42 : lValSerLeuIleLeuIleValValSerTyrCysSerIleLeuThrThrValValPro : 60 !:!!|||:!!||||||||| !!:!!!!!||| !!!!!||||||..!|||:!!:!!||| eIleSerValIleLeuIlePheIleCysTyrSerThrIleLeuValThrLeuIlePro 259855 : CATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATACTGGTCACCCTGATCCCG : 259911 61 : CysIleLeuTyrValIleLeuAspAspAspLeuLeuThrGlnLysLeuMetMetValG : 80 |||:!!|||:!!:!!:!!|||!!: ! !!: !||| !..!||| !! !:!!:!!| CysValLeuHisMetLeuLeuGluLysGluSerLeuTyrMetLysThrLysValLeuG 259912 : TGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGAAGGTGCTCG : 259971 81 : lyProLeuSerHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgLy : 99 ||||||||!!!|||||||||:!!||| !!||||||||||||||||||||||||||| lyProLeuThrHisTrpPheValGlyCysIleAsnTyrThrThrLeuLeuLeuArgGl 259972 : GTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTGTTGAGAGG : 260028 100 : sLysGluIleGlnCysCysValLysHisIleHisMetGlnThrAspTrpArgSerVal : 118 !:!!!:|||! !!||||||:!!|||:!: :!!!.!|||||||||! !:!! yArgAspIleLeuSerCysValGluHisVal------GluAsnAspTrpArgIleIle 260029 : CAGAGACATACTTAGCTGCGTGGAACACGTG------GAGAACGATTGGAGAATTATA : 260079 119 : ThrLysSerLysAspGlnGluIleMetLeuLysAspAlaGluPheGlyArgTyrValV : 138 |||!:!..!|||||||||.!.:!:||||||!:! !!|||:!!|||||||||||||||! ThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgTyrValA 260080 : ACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGATACGTCG : 260139 139 : alIlePheCysThrAlaPheMetGlnGlyGlyValLeuCysTyrCysValIleThrGl : 157 .! !! !|||.!!||||||:!!||||||||||||||||||!:!|||:!!:!!|||! laAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCysLeuValThrVa 260140 : CTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTCACGGT : 260196 158 : yPheThrThrGluValIleGlnValGlyAsnGluThrArgThrIleArgMetLeuPro : 176 !!!.!:!|||||||||||||||||||||||||||||||||! !:!!!.!:!!|||||| lLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleValHisLeuLeuPro 260197 : GTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTGCCG : 260253 177 : CysAlaAlaTyrLysLysLeuIleProValAspThrSerProThrAsnGluIleIleL : 196 ||||||!.!||||||:!!|||||| !|||:!! !||||||! !|||||||||:!!| CysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetAsnGluIleValL 260254 : TGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGATTGTTC : 260313 197 : euPheValGlnPheLeuAlaGlyPheIleValAsnSerSerThrValGlyAlaPheSe : 215 || !!|||||||||:!!:!!|||||||||||||||||||||||||||||| !||||| euValValGlnPheValSerGlyPheIleValAsnSerSerThrValGlyIlePheSe 260314 : TCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTTCAG : 260370 216 : rLeuAlaIleValPheAlaAlaHisAlaTyrGlyGlnLeuAsnValLeuIleThrTrp : 234 ||||||| !|||.!..!!|||||||||! !||||||||||||||||||!!: !||| rLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMetGluTrp 260371 : TCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAATGG : 260427 235 : IleArgGluLeuValAsnGluSerArgGlyArgAspArgAsnValTyrLeuLysGluI : 254 |||! !|||!!!|||:!!|||||||||..!||| ! !:!!!.!.! !!!!||||||| IleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaProPheLysGluI 260428 : ATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTCCTTTCAAGGAGA : 260487 255 : leGlyValValValAspAsnHisLeuArgAlaLeu{Se} >>>> Target Intro : 266 ||||||||:!!|||!!::!!|||||||||||||||{!!} 257 bp leGlyValIleValGluHisHisLeuArgAlaLeu{Th}++ 260488 : TCGGAGTGATTGTCGAACATCATTTGAGAGCACTC{AC}gt................. : 260527 267 : n 1 >>>> {r}PheIleSerTyrIleGluAspMetMetThrGluIleCysPheLeu : 281 {!}||||||||| !|||||||||:!!|||!.!..!|||||||||||| ++{r}PheIleSerArgIleGluAspValMetAsnArgIleCysPheLeu 260528 : ........ag{C}TTCATATCGCGTATCGAGGATGTGATGAACCGGATATGCTTCCTG : 260825 282 : GluLeuPheLysCysThrPheAsnIleCysMetLeuGlyTyrTyrValLeuMet >> : 300 |||||||||!:!||||||.!.:!!||||||:!:||||||||||||:!!|||||| GluLeuPheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeuMet++ 260826 : GAGTTGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATATTCTTATGgt.. : 260884 301 : >> Target Intron 2 >>>> HisTrpAlaAsnArgAspTyrGlnAsnMetThr : 310 852 bp .!.||||||.!.!:!||| ||||||:!!:!! ++GluTrpAlaGluGlnAspIleGlnAsnLeuSer 260885 : .......................agGAATGGGCTGAGCAAGATATACAAAATCTGTCC : 261764 311 : IleCysValValIleLeuCysSerMetAlaPheAsnIlePheIleValCysTyrIleG : 330 ! ! ! !!:!!!!:||| :!!!!:..!||||||:!!||||||:!!|||||||||| ThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleG 261765 : ACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCG : 261824 331 : lyGluLysLeuSerGluGln >>>> Target Intron 3 >>>> CysLysAsn : 339 |||||! !|||!!!|||||| 81 bp |||..!!!. lyGluIleLeuThrGluGln++ ++CysSerLys 261825 : GTGAAATACTAACGGAACAGgt.........................agTGCTCGAAA : 261932 340 : ValGlyAspSerValTyrMetThrAsnTrpTyrTyrLeuProAspLysHisIleLeuA : 359 ||||||||| !|||||||||||||||||||||||||||||||||||| !||||||| ValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuProAspLysSerIleLeuA 261933 : GTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACCTGATAAAAGTATCCTTG : 261992 360 : spLeuLeuLeuIleIleSerArgSerSerThrValIleLysMetThrAlaGlyLysPh : 378 |||||:!!|||||||||:!!|||!.! !! !!! !! ! !!.!.! !..! ::!|| spLeuIleLeuIleIleAlaArgLysProProGlyAsn***PheLysCys---ArgPh 261993 : ATTTGATTTTGATCATTGCACGAAAACCGCCGGGAAATTAGTTCAAATGT---CGGTT : 262046 379 : eValThrMetSer{Il} >>>> Target Intron 4 >>>> {e}TyrThrPhe : 386 |..! ! !:!!{||} 75 bp {|} !.!. eThrArgSerAla{Il}++ ++{e}ProLeuIle 262047 : TACACGTTCGGCG{AT}gt.........................ag{T}CCGTTGATA : 262145 387 : AlaSerValValLysThrAlaPheAlaTyrLeuAsnValLeuArgGlnThrThr : 404 !..!||||||||||||||||||||||||||||||:!!|||||||||! !||| PheGlnValValLysThrAlaPheAlaTyrLeuAsnLeuLeuArgGlnMetThr 262146 : TTCCAGGTGGTTAAAACTGCTTTCGCGTATCTGAATCTGTTGCGTCAAATGACG : 262201 vulgar: gi|383850718|ref|XP_003700923.1| 4 404 . KQ414889.1 259739 262201 + 1170 M 28 84 G 0 6 M 77 231 G 2 0 M 154 462 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 39 117 G 1 0 M 6 18 S 0 2 5 0 2 I 0 71 3 0 2 S 1 1 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259740 262201 1170 + . gene_id 2 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259740 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259740 260524 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262062 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262062 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 262063 262064 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 262063 262137 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 262136 262137 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 262138 262201 . + . KQ414889.1 exonerate:protein2genome:local exon 262138 262201 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259740 262201 1170 + . alignment_id 2 ; Query gi|383850718|ref|XP_003700923.1| ; Align 259740 5 84 ; Align 259830 33 231 ; Align 260061 112 462 ; Align 260783 267 99 ; Align 261734 300 111 ; Align 261926 337 117 ; Align 262043 377 18 ; Align 262139 384 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1019 Query range: 5 -> 298 Target range: 274353 -> 275306 6 : IleArgThrAspLeuAspSerLeuPheAspTyrSerLeuGlnLeuAsnLysTrpLeuL : 25 :!!! !.!!:!!!!!||||||||| !|||||||||||||||||||||::!|||!!!| ValThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheL 274354 : GTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCT : 274411 26 : euIleProIleGlyAlaTrpPro<-><->SerThrThrSerLysIleGluArgValVa : 42 ||! |||||||||||||||||| ||| !!|||!!!|||.!!||||||:!!:! euLysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLe 274412 : TGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCT : 274468 43 : lSerLeuIleLeuIleValValSerTyrCysSerIleLeuThrThrValValProCys : 61 !|||! !:::|||||| ::: ||||||! !||||||:!!||||||:!!||| !! uSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSer 274469 : TTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGC : 274525 62 : IleLeuTyrValIleLeuAspAspAspLeuLeuThrGlnLysLeuMetMetValGlyP : 81 |||!!!:!!:!!||||||! |||!!: !||| !! !||||||! !:!!:!!|||| IlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyP 274526 : ATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTC : 274585 82 : roLeuSerHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgLysLy : 100 |||||.!!|||||||||||||||||||||||||||||||||||||||||||||!..|| roLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLy 274586 : CTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAA : 274642 101 : sGluIleGlnCysCysValLysHisIleHisMetGlnThrAspTrpArgSerValThr : 119 |||||||!:: !!||||||:!! |||||||||||||||||||||! !|||||| sGluIleArgGlyCysValGlu------HisMetGlnThrAspTrpArgIleValThr 274643 : AGAGATACGCGGCTGCGTGGAG------CACATGCAAACAGATTGGAGGATCGTGACC : 274693 120 : LysSerLysAspGlnGluIleMetLeuLysAspAlaGluPheGlyArgTyrValValI : 139 !:! !!:!!||||||:!!:!:|||||||||:!!|||:!!.!!||||||||||||!.!| ArgProGluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaI 274694 : AGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGA : 274753 140 : lePheCysThrAlaPheMetGlnGlyGlyValLeuCysTyrCysValIleThrGlyPh : 158 ||||||||.!!|||||||||||| !!|||||||||||||||||||||||||||!.!|| lePheCysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPh 274754 : TCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTT : 274810 159 : eThrThrGluValIleGlnValGlyAsnGluThrArgThrIleArgMetLeuProCys : 177 ||||! !:!!..!:!!||||||||||||||||||||||||:!:!.!|||||||||||| eThrMetGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCys 274811 : CACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGT : 274867 178 : AlaAlaTyrLysLysLeuIleProValAspThrSerProThrAsnGluIleIleLeuP : 197 !||||||||||||:!!:!! !!|||||||||||||||||||||||||||:!!||| LysAlaTyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValLeuA 274868 : AAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTG : 274927 198 : heValGlnPheLeuAlaGlyPheIleValAsnSerSerThrValGlyAlaPheSerLe : 216 ! !||||||:!!:!!|||||||||||||||||||||.!!||||||||||||||||| laSerGlnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLe 274928 : CCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCT : 274984 217 : uAlaIleValPheAlaAlaHisAlaTyrGlyGlnLeuAsnValLeuIleThrTrpIle : 235 |||| !||||||||||||||||||||||||||||||!:!||||||!!:! !|||||| uAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIle 274985 : TGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATC : 275041 236 : ArgGluLeuValAsnGluSerArgGlyArgAspArgAsnValTyrLeuLysGluIleG : 255 ! !|||!!!||||||.!.||||||! :::::::::|||||||||......||||||| ThrGluPheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleG 275042 : ACCGAGTTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCG : 275101 256 : lyValValValAspAsnHisLeuArgAlaLeu{Se} >>>> Target Intron 1 : 266 |||||||||||!!::!!|||||||||!.!|||{||} 74 bp lyValValValGluHisHisLeuArgValLeu{Se}++ 275102 : GCGTGGTTGTCGAACATCATCTGAGGGTACTC{AG}gt.................... : 275138 267 : >>>> {r}PheIleSerTyrIleGluAspMetMetThrGluIleCysPheLeuGlu : 282 {|}||||||:!! !|||||||||:!!|||!.!..!|||||||||:!!||| ++{r}PheIleAlaArgIleGluAspValMetAsnArgIleCysPheMetGlu 275139 : .....ag{T}TTCATAGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAA : 275256 283 : LeuPheLysCysThrPheAsnIleCysMetLeuGlyTyrTyrValLeu : 298 |||||||||||||||.!.:!!!!:||||||||||||||||||:!!||| LeuPheLysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleLeu 275257 : TTGTTCAAGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTCTC : 275306 vulgar: gi|383850718|ref|XP_003700923.1| 5 298 . KQ414889.1 274353 275306 + 1019 M 27 81 G 0 6 M 75 225 G 2 0 M 156 468 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274354 275306 1019 + . gene_id 3 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274354 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274354 275135 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274354 275306 1019 + . alignment_id 3 ; Query gi|383850718|ref|XP_003700923.1| ; Align 274354 6 81 ; Align 274441 33 225 ; Align 274666 110 468 ; Align 275211 267 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 994 Query range: 1 -> 298 Target range: 266595 -> 267555 2 : GluProSerIleIleArgThrAspLeuAspSerLeuPheAspTyrSerLeuGlnLeuA : 21 ||| !!! !:!!|||..!.!!:!!|||:!!|||||| !||||||||||||||||||| GluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerLeuGlnLeuA 266596 : GAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCCTGCAATTGA : 266653 22 : snLysTrpLeuLeuIleProIleGlyAlaTrpPro<-><->SerThrThrSerLysIl : 38 ||::!|||!!!|||! !|||||||||||||||||| ||| !|||||||||:! snArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuThrSerLysLe 266654 : ATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCACATCTAAACT : 266710 39 : eGluArgValValSerLeuIleLeuIleValValSerTyrCysSerIleLeuThrThr : 57 !||||||:!!||||||! ! !|||||||||:!!!!!||||||||||||||| !||| uGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIleLeuPheThr 266711 : CGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATACTGTTCACC : 266767 58 : ValValProCysIleLeuTyrValIleLeuAspAspAspLeuLeuThrGlnLysLeuM : 77 |||:!!||||||:!:!!!:!!:!!:!!|||!!:|||!!: !:!! ! !|||:!!! ValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgThrLysValL 266768 : GTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTACGAAAGTGA : 266827 78 : etMetValGlyProLeuSerHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLe : 96 !:!! !!|||||||||||||||||||||:!!|||||||||||||||||||||||||| ysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrThrThrLeuLe 266828 : AGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACACCACACTGTT : 266884 97 : uLeuArgLysLysGluIleGlnCysCysValLysHisIleHisMetGlnThrAspTrp : 115 |||||||!..|||||||||!:: !!||||||:!! |||||||||||||||||| uLeuArgSerLysGluIleArgGlyCysValGlu------HisMetGlnThrAspTrp 266885 : GCTACGCAGCAAAGAGATACGCGGTTGCGTAGAG------CACATGCAAACAGATTGG : 266935 116 : ArgSerValThrLysSerLysAspGlnGluIleMetLeuLysAspAlaGluPheGlyA : 135 |||! !||||||!:! !!:!!|||:!!:!!:!:|||||||||:!!|||..!.!!|||| ArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleGlyA 266936 : AGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCGGTC : 266995 136 : rgTyrValValIlePheCysThrAlaPheMetGlnGlyGlyValLeuCysTyrCysVa : 154 |||||:!!!.!|||||||||.!!|||||||||||| !!||||||||| !!|||||||| rgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCysVa 266996 : GTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGT : 267052 155 : lIleThrGlyPheThrThrGluValIleGlnValGlyAsnGluThrArgThrIleArg : 173 |||||||!.!||||||! !:!!..!:!::!!||||||||||||||||||! !:!!!.! lIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleValHis 267053 : GATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTACAT : 267109 174 : MetLeuProCysAlaAlaTyrLysLysLeuIleProValAspThrSerProThrAsnG : 193 :!!||||||||||||!.!|||||||||:!!||| !!|||||||||||||||||||||| LeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrAsnG 267110 : CTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGAACG : 267169 194 : luIleIleLeuPheValGlnPheLeuAlaGlyPheIleValAsnSerSerThrValGl : 212 |||||:!!||| !! !||||||:!!:!!|||||||||||||||||||||..!||||| luIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValValGl 267170 : AGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCGG : 267226 213 : yAlaPheSerLeuAlaIleValPheAlaAlaHisAlaTyrGlyGlnLeuAsnValLeu : 231 |||||||||||||||| !||||||||||||||||||! !|||||||||!:!|||||| yAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerValLeu 267227 : TGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTG : 267283 232 : IleThrTrpIleArgGluLeuValAsnGluSerArgGlyArgAspArgAsnValTyrL : 251 !!:! !||||||!:!|||!!!||||||..!||||||! !!!!:!!!:!||||||! !! MetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValCysP 267284 : ATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTTGCT : 267343 252 : euLysGluIleGlyValValValAspAsnHisLeuArgAlaLeu{Se} >>>> Tar : 266 !! ! :!!|||||||||||||||!!::!!|||||||||!.!|||{||} heAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 267344 : TCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG}gt........ : 267392 267 : get Intron 1 >>>> {r}PheIleSerTyrIleGluAspMetMetThrGluIle : 278 69 bp {|}||||||:!! !||||||..!:!:|||!:!|||||| ++{r}PheIleAlaArgIleGluSerValMetSerGluIle 267393 : .................ag{C}TTCATAGCACGTATCGAAAGTGTAATGAGCGAAATT : 267493 279 : CysPheLeuGluLeuPheLysCysThrPheAsnIleCysMetLeuGlyTyrTyrValL : 298 ||||||:!!||||||||||||||||||.!.:!!||||||:!!|||.!!||||||:!!| CysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSerTyrTyrIleL 267494 : TGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCTATTATATCC : 267553 299 : eu : 298 || eu 267554 : TT : 267555 vulgar: gi|383850718|ref|XP_003700923.1| 1 298 . KQ414889.1 266595 267555 + 994 M 31 93 G 0 6 M 75 225 G 2 0 M 156 468 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266596 267555 994 + . gene_id 4 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266596 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266596 267389 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267555 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266596 267555 994 + . alignment_id 4 ; Query gi|383850718|ref|XP_003700923.1| ; Align 266596 2 93 ; Align 266695 33 225 ; Align 266920 110 468 ; Align 267460 267 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 774 Query range: 11 -> 265 Target range: 262837 -> 263599 12 : SerLeuPheAspTyrSerLeuGlnLeuAsnLysTrpLeuLeuIleProIleGlyAlaT : 31 |||||| !|||||||||||||||:!!|||::!|||||||||! !||||||||||||| SerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaT 262838 : AGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCAT : 262895 32 : rpPro<-><->SerThrThrSerLysIleGluArgValValSerLeuIleLeuIleVa : 48 ||||| :!!:!!! !|||!:!!!:||||||:!!:!!!!!!!!:!!|||||||| rpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleVa 262896 : GGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGT : 262952 49 : lValSerTyrCysSerIleLeuThrThrValValProCysIleLeuTyrValIleLeu : 67 ||||!!!|||||| !||||||:!!||||||:!!|||! !||||||:!!:!!:!!||| lValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeu 262953 : CGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTA : 263009 68 : AspAspAspLeuLeuThrGlnLysLeuMetMetValGlyProLeuSerHisTrpPheI : 87 !!:! !!!: !!!! !..!||||||..!:!::!!|||||||||.!!!!.||||||: GluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheV 263010 : GAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCG : 263069 88 : leGlyGlyIleAsnTyrThrThrLeuLeuLeuArgLysLysGluIleGlnCysCysVa : 106 !!||| !|||||||||||| !|||||||||!.!!..|||!!:|||||| !!||||| alGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysVa 263070 : TCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGT : 263126 107 : lLysHisIleHisMetGlnThrAspTrpArgSerValThrLysSerLysAspGlnGlu : 125 |:!!|||:!: ||| !|||||| !!! !||||||!:!! !:!!||||||... lGlnHisVal------GlnGluAspTrpCysIleValThrArgLeuGluAspGlnArg 263127 : GCAACACGTG------CAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGT : 263177 126 : IleMetLeuLysAspAlaGluPheGlyArgTyrValValIlePheCysThrAlaPheM : 145 ||||||||||||:!!|||:!!!:!||||||||||||!.! !! !|||.!! !|||| IleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheM 263178 : ATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCA : 263237 146 : etGlnGlyGlyValLeuCysTyrCysValIleThrGlyPheThrThrGluValIleGl : 164 ||||| !.!!:!!:!!||| ! |||:!!:!!|||!.!|||||||||:!!||||||:! etGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnValIleGl 263238 : TGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGA : 263294 165 : nValGlyAsnGluThrArgThrIleArgMetLeuProCysAlaAlaTyrLysLysLeu : 183 !! !|||||||||||||||! !:!!||||||||||||||| !!!.!||||||:!!:!! uAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLysGluIle 263295 : GGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATC : 263351 184 : IleProValAspThrSerProThrAsnGluIleIleLeuPheValGlnPheLeuAlaG : 203 |||||||||||||||!:!|||||||||||||||.!!||| !..!|||||||||:!!| IleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerG 263352 : ATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGG : 263411 204 : lyPheIleValAsnSerSerThrValGlyAlaPheSerLeuAlaIleValPheAlaAl : 222 |||||||||||!.!:!!!!!|||||||||||||||.!!:!!.!! |||||||||!. lyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGl 263412 : GTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGG : 263468 223 : aHisAlaTyrGlyGlnLeuAsnValLeuIleThrTrpIleArgGluLeuValAsnGlu : 241 !||||||! !||||||||||||||||||!!::!!||||||! !|||!!!||||||:!! yHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGln 263469 : TCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAG : 263525 242 : SerArgGlyArgAspArgAsnValTyrLeuLysGluIleGlyValValValAspAsnH : 261 ||||||! !..!:!!!:!|||:!!|||!!!! ||||||||||||:!!|||!!::!!| SerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValGluHisH 263526 : TCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATC : 263585 262 : isLeuArgAlaLeu : 265 ||||||||!.!||| isLeuArgValLeu 263586 : ATCTGAGAGTTCTG : 263599 vulgar: gi|383850718|ref|XP_003700923.1| 11 265 . KQ414889.1 262837 263599 + 774 M 21 63 G 0 6 M 77 231 G 2 0 M 154 462 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262838 263599 774 + . gene_id 5 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262838 263599 . + . KQ414889.1 exonerate:protein2genome:local exon 262838 263599 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 262838 263599 774 + . alignment_id 5 ; Query gi|383850718|ref|XP_003700923.1| ; Align 262838 12 63 ; Align 262907 33 231 ; Align 263138 112 462 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 690 Query range: 13 -> 389 Target range: 232453 -> 235147 14 : PheAspTyrSerLeuGlnLeuAsnLysTrpLeuLeuIleProIleGlyAlaTrpPro< : 33 !:!!!:||||||:!!|||:!!|||:::|||!!!|||! !|||!!:|||||||||||| TyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProA 232454 : TACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGC : 232511 34 : -><->SerThrThrSerLysIleGluArgValValSerLeuIleLeuIleValValSe : 50 !!! !||||||!:! !:!!!:!:!!:!!:!! !:!:|||! !:!!..!!! rgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCy 232512 : GTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTG : 232568 51 : rTyrCysSerIleLeuThrThrValValProCysIleLeuTyrValIleLeuAspAsp : 69 !:!!! ! !!!::!!:!!:!!:!!|||||||||||||||!:!:!!:!:!!!!!:||| sHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAsp 232569 : TCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGAC : 232625 70 : AspLeuLeuThrGlnLysLeuMetMetValGlyProLeuSerHisTrpPheIleGlyG : 89 !||| !:!!!:!:!!! ! :!!||||||:!!||||||!::.!.!!:|||! ThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyG 232626 : ACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTG : 232685 90 : lyIleAsnTyrThrThrLeuLeuLeuArgLysLysGluIleGlnCysCysValLysHi : 108 !:!:|||||| ! !|||||| !!:! !!!.!!:|||! ! !||||||:!!!! luLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGl 232686 : AATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACA : 232742 109 : sIleHisMetGlnThrAspTrpArgSerValThrLysSerLysAspGlnGluIleMet : 127 .:!: :!! !|||||||||!:!|||! !||| !! !!!::!!::!:||| nVal------LysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMet 232743 : GGTG------AAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATG : 232793 128 : LeuLysAspAlaGluPheGlyArgTyrValValIlePheCysThrAlaPheMetGlnG : 147 ||||||:!!|||:!!.!!||||||! :!!!.! !.!!..!.!! !! !|||!!. LeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisT 232794 : TTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACA : 232853 148 : lyGlyValLeuCysTyrCysValIleThrGlyPheThrThrGluValIleGlnValGl : 166 !|||||| !! ! !! :!!:!!||||||.!! !! !.....!.!! ! ||||| hrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGl 232854 : CCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGG : 232910 167 : yAsnGluThrArgThrIleArgMetLeuProCysAlaAlaTyrLysLysLeuIlePro : 185 |||||||!:! !:!!!!: ! !|||||||||.!! !|||! !||||||!!: ! yAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAsp 232911 : GAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGAC : 232967 186 : ValAspThrSerProThrAsnGluIleIleLeuPheValGlnPheLeuAlaGlyPheI : 205 ..! !||||||||||||||||||!!:!!! !!:!!|||! !|||:!!||||||| ThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheI 232968 : ACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCA : 233027 206 : leValAsnSerSerThrValGlyAlaPheSerLeuAlaIleValPheAlaAlaHisAl : 224 ||||||||||| !||||||||||||! !.!!|||!.! !|||.!.||| !||||| leValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAl 233028 : TCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGC : 233084 225 : aTyrGlyGlnLeuAsnValLeuIleThrTrpIleArgGluLeuValAsnGluSerArg : 243 |! !|||||||||||||||:!!!!::!! :!: !!!:|||||| !!::!!!:! aCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuVal---AspAlaLys 233085 : GTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTG---GACGCGAAA : 233138 244 : GlyArgAspArgAsnValTyrLeuLysGluIleGlyValValValAspAsnHisLeuA : 263 |||!:!!!:..!!..||| ! !!:!:!!:!!||| !!:!!|||!!::!!||||||| GlyGlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuA 233139 : GGGCAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGC : 233198 264 : rgAlaLeuSerPheIleSerTyrIleGluAspMetMetThrGlu--IleCysPheLeu : 281 ||.!!|||!!!!:!:!:||| ! ..!.!.! ..!:!!##:!:||| ! rgThrLeuArgTyrLeuSerValArgCysSerPheAsnValGln##LeuCysArgAla 233199 : GTACATTAAGGTATTTGTCTGTGCGTTGTAGTTTCAATGTGCAATACTGTGCAGAGCT : 233254 282 : GluLeuPheLysCysThrPheAsnIleCysMetLeuGlyTyrTyrValLeuMetHisT : 301 |||:!! !..||| ! ||| ||| !!|||:!!||| :!!| GluValLysSerCysGluLysLeuAlaCysGly---GlyAsnTyrIleLeuGlyTyrT 233255 : GAAGTGAAGAGTTGTGAGAAGTTGGCGTGTGGA---GGGAATTATATTCTTGGTTATT : 233311 302 : rpAlaAsnArgAspTyrGlnAsnMetThrIleCys >>>> Target Intron 1 : 313 || !!||||||...|||! ! !!: !:!: 1496 bp rpProAsnArgSerTyrLeuProIle***ValLys-+ 233312 : GGCCAAACCGGTCGTATCTACCAATCTGAGTGAAAtt..................... : 233349 314 : >>>> ValValIleLeuCysSerMetAlaPheAsnIlePheIleValCysTyrIleG : 330 |||:!!:!:! ! ||||||.!!||||||||||||||| |||||||||| +-ValIleValTyrValSerMetThrPheAsnIlePheIlePheCysTyrIleG 233350 : ....acGTCATCGTGTACGTGTCCATGACATTtaatatattcatattttgttACATCG : 234894 331 : lyGluLysLeuSerGluGln >>>> Target Intron 2 >>>> CysLysAsn : 339 |||||! !|||!!!|||||| 74 bp |||! !!. lyGluThrLeuThrGluGln++ ++CysThrLys 234895 : GAGAGACGCTTACAGAGCAGgt.........................agTGTACCAAA : 234995 340 : ValGlyAspSerValTyrMetThrAsnTrpTyrTyrLeuProAspLysHisIleLeuA : 359 ||||||!!:!.!||||||||||||.!.|||||| |||||| !!||| ! !|||! ValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuG 234996 : GTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCG : 235055 360 : spLeuLeuLeuIleIleSerArgSerSerThrValIleLysMetThrAlaGlyLysPh : 378 !|||:!!:!!||||||||||||||||||! !|||||||||!!:|||||||||||||| lyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPh 235056 : GTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCACCGCTGGAAAATT : 235112 379 : eValThrMetSerIleTyrThrPheAlaSerVal : 389 |:!! !||||||:!! ||||||!.!..!||| eLeuGlnMetSerValAlaThrPheGlyAspVal 235113 : CCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: gi|383850718|ref|XP_003700923.1| 13 389 . KQ414889.1 232453 235147 + 690 M 19 57 G 0 6 M 77 231 G 2 0 M 128 384 G 1 0 M 37 111 F 0 2 M 15 45 G 1 0 M 19 57 5 0 2 I 0 1492 3 0 2 M 24 72 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232454 235147 690 + . gene_id 6 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232454 233346 . + . KQ414889.1 exonerate:protein2genome:local exon 232454 233346 . + . insertions 6 ; deletions 4 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local splice5 233347 233348 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 233347 234842 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234841 234842 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 234843 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234843 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232454 235147 690 + . alignment_id 6 ; Query gi|383850718|ref|XP_003700923.1| ; Align 232454 14 57 ; Align 232517 33 231 ; Align 232748 112 384 ; Align 233132 241 111 ; Align 233245 278 45 ; Align 233290 294 57 ; Align 234843 313 72 ; Align 234989 337 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 639 Query range: 10 -> 404 Target range: 284508 -> 287338 11 : AspSerLeuPheAspTyrSerLeuGlnLeuAsnLysTrpLeuLeuIleProIleGlyA : 30 |||!!! !!:: ||||||:!!|||:!!|||:::|||!!!|||! !|||||||||! AspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyV 284509 : GACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCG : 284566 31 : laTrpProSerThr<-><->ThrSerLysIleGluArgValValSerLeuIleLeuIl : 47 .!|||||| !!:! ..!!!!! :!:|||!:!:!! !|||:!!:!!||| alTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAl 284567 : TATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGC : 284623 48 : eValValSerTyrCysSerIleLeuThrThrValValProCysIleLeuTyrValIle : 66 :!!:!!|||! !! ! !||| ! ! !:!!||||||||| !|||! !..!:!: aLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrVal 284624 : GTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTG : 284680 67 : LeuAsp<->AspAspLeuLeuThrGlnLysLeuMetMetValGlyProLeuSerHisT : 85 |||||| !! ! !||| ! !|||:!!! |||:!!|||||||||||| !! LeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheC 284681 : CTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCT : 284740 86 : rpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgLysLysGluIleGlnCy : 104 ! .!.!!:!.!!.!|||!!.||| !! !|||:!!! !||| :!!||| ysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGl 284741 : GCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCA : 284797 105 : sCysValLysHisIleHisMetGlnThrAspTrpArg<->SerValThrLysSerLys : 122 ||||||||| !!|||!.! !.!. !..! ! ! ||| !!:::::...::: nCysValLysAspIleArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGlu 284798 : ATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagag : 284854 123 : AspGlnGluIleMetLeuLysAspAlaGluPheGlyArgTyrValValIlePheCysT : 142 ::::::||||||||| ! ! ..!|||..!.!!||||||! !:!!!.!|||||||||. GluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysA 284855 : gagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCG : 284914 143 : hrAlaPheMetGlnGlyGlyValLeuCysTyrCysValIleThrGlyPheThrThrGl : 161 !!!.!|||||| ! ..!|||! !!!!! !||| !..!:!:! ! !!!. !|||! laGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysThrVa 284915 : CCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGT : 284971 162 : uValIleGlnValGlyAsnGluThrArgThrIleArgMetLeuProCysAlaAlaTyr : 180 ! !! :!!:!! ! !!!:!.!..!|||:!:||| ! ! !!! ! !! !||| lArgThrGluIle---IleAspAsnGluThrValArgSerGlnAlaPheProIleTyr 284972 : ACGCACGGAGATC---ATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTAT : 285025 181 : LysLysLeuIleProValAspThrSerProThrAsnGluIleIleLeuPheValGlnP : 200 ::: |||:!! ! ! !|||||||||:!! !||||||:!:! !|||:!!|||! ArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnC 285026 : CGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAAT : 285085 201 : heLeuAlaGlyPheIleValAsnSerSerThrValGlyAlaPheSerLeuAlaIleVa : 219 !||||||!.!|||:!!:!! !!||| !||||||||||||! !||||||||| !|| ysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaVa 285086 : GCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGT : 285142 220 : lPheAlaAlaHisAlaTyrGlyGlnLeuAsnValLeuIleThrTrpIleArgGluLeu : 238 ||||!.! !|||!.!! !||||||!!!!..:!!|||:!:||| !:!: !:!!||| lPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeu 285143 : GTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTC : 285199 239 : ValAsnGluSerArgGlyArg<->AspArgAsnValTyrLeuLysGluIleGlyValV : 257 |||:!!! ! !!:!|||||| ! !!:!..!:!! !:!!..!:!:|||! !: ValAspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspI 285200 : GTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATA : 285259 258 : alValAspAsnHisLeuArgAlaLeu{Se} >>>> Target Intron 1 >>>> : 266 !!:!!!!::!!||||||!:! !|||{.!} 1411 bp leIleGluHisHisLeuLysIleLeu{Gl}++ + 285260 : TCATCGAGCATCATCTGAAGATACTG{GG}gt.........................a : 286697 267 : {r}PheIleSerTyrIleGluAspMetMetThrGluIleCysPheLeuGluLeuPhe : 284 {!}||||||||| ! ||||||! :!::!:!.!||||||||||||:!!|||:!!.!! +{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValIle 286698 : g{T}TTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATT : 286751 285 : LysCysThrPheAsnIleCysMetLeuGlyTyrTyrValLeuMet >>>> Target : 300 ||||||!!.|||||||||.!.||||||||||||:!!|||! ! 8 GlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeuThr++ 286752 : GGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTACTGACGgt........... : 286801 301 : Intron 2 >>>> HisTrpAlaAsnArgAspTyrGlnAsnMetThrIleCysVal : 313 0 bp .!.|||! !.!.!!!!!: ! !...! !! !! ! ! ! ++GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCys 286802 : ..............agGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGC : 286918 314 : ValIleLeuCysSerMetAlaPheAsnIlePheIleValCysTyrIleGlyGluLysL : 333 ..!:!:||| |||.!..!!||||||:!!||||||:!!|||||||||||||||! | ThrLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleL 286919 : ACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTC : 286978 334 : euSerGluGln >>>> Target Intron 3 >>>> CysLysAsnValGlyAsp : 342 ||||||||||| 74 bp ||| !!!.|||||| euSerGluGln++ ++CysLeuLysValGlyLeu 286979 : TCTCCGAACaggt.........................agtGCTTAAAAGTCGGCTTG : 287079 343 : SerValTyrMetThrAsnTrpTyrTyrLeuProAspLysHisIleLeuAspLeuLeuL : 362 |||..!||||||! !:!!|||||| !||||||! ||| !! !! !|||:!!| SerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleL 287080 : TCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATAC : 287139 363 : euIleIleSerArgSerSerThrValIleLysMetThrAlaGlyLysPheValThrMe : 381 |||||.!!:!! !|||!:!:!! !||||||:!:||||||||||||.!!:!! !:! euIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLe 287140 : TGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCT : 287196 382 : tSerIleTyrThrPheAlaSer >>>> Target Intron 4 >>>> ValValL : 391 :|||:!! !!:!|||..!||| 71 bp |||:!!| uSerLeuSerSerPheCysSer++ ++ValLeuL 287197 : CTCTTTAAGCAGCTTCTGCAGCgt.........................agGTGTTGA : 287297 392 : ysThrAlaPheAlaTyrLeuAsnValLeuArgGlnThrThr : 404 ||:!!|||||||||||||||!:!:!!|||||| ! !||| ysSerAlaPheAlaTyrLeuSerLeuLeuArgThrLeuThr 287298 : AATCGGCATTCGCATATCTGAGCTTATTACGTACGCTAACC : 287338 vulgar: gi|383850718|ref|XP_003700923.1| 10 404 . KQ414889.1 284508 287338 + 639 M 24 72 G 0 6 M 34 102 G 0 3 M 48 144 G 0 3 M 49 147 G 1 0 M 79 237 G 0 3 M 20 60 S 0 2 5 0 2 I 0 1407 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284509 287338 639 + . gene_id 7 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284509 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284509 285287 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286698 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287220 287221 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 287220 287290 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287289 287290 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 287291 287338 . + . KQ414889.1 exonerate:protein2genome:local exon 287291 287338 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284509 287338 639 + . alignment_id 7 ; Query gi|383850718|ref|XP_003700923.1| ; Align 284509 11 72 ; Align 284587 35 102 ; Align 284692 69 144 ; Align 284839 117 147 ; Align 284986 167 237 ; Align 285226 246 60 ; Align 286700 267 99 ; Align 286879 300 111 ; Align 287064 337 156 ; Align 287291 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 617 Query range: 15 -> 404 Target range: 278576 -> 280551 16 : TyrSerLeuGlnLeuAsnLysTrpLeuLeuIleProIleGlyAlaTrpProSerThr< : 35 ||||||:!!|||:!!|||:::|||!!!|||! !|||||||||!.!|||||| !!:! TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 36 : -><->ThrSerLysIleGluArgValValSerLeuIleLeuIleValValSerTyrCy : 52 ..!!!!! :!:|||!:!:!! !|||:!!:!!||| :!!:!!|||! !! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 53 : sSerIleLeuThrThrValValProCysIleLeuTyrValIleLeuAsp<->AspAsp : 70 ! !||| ! ! !:!!||||||||| !|||! !..!:!:|||||| !! ! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 71 : LeuLeuThrGlnLysLeuMetMetValGlyProLeuSerHisTrpPheIleGlyGlyI : 90 !||| ! !|||:!!! |||:!!|||||||||||| !!! !!:!.! !| AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 91 : leAsnTyrThrThrLeuLeuLeuArgLysLysGluIleGlnCysCysValLysHisIl : 109 ||!!.||| !! !|||:!!! !||| :!!||| ||||||!!. !!|| leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 110 : eHisMetGlnThrAspTrpArg<->SerValThrLysSerLysAspGlnGluIleMet : 127 |!.!! !.!. !..! ! ! ||| ! :::...:::::::::||||||||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 128 : LeuLysAspAlaGluPheGlyArgTyrValValIlePheCysThrAlaPheMetGlnG : 147 ! ! ..!|||..!.!!||||||! !:!!!.!|||||| !!.!!!.!|||||| ! . ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 148 : lyGlyValLeuCysTyrCysValIleThrGlyPheThrThrGluValIleGlnValGl : 166 .!|||! !:!!! !||| !!.!:!:! ! !!!. !.!!! ! !! :!!:!! erGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIle-- 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATC-- : 279039 167 : yAsnGluThrArgThrIleArgMetLeuProCysAlaAlaTyrLysLysLeuIlePro : 185 ! !!!:!.!..!|||:!:||| ! ! !!! ! !! !|||::: |||:!! ! -IleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAsp 279040 : -ATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGAT : 279093 186 : ValAspThrSerProThrAsnGluIleIleLeuPheValGlnPheLeuAlaGlyPheI : 205 ! !|||||||||:!! !||||||:!:! !|||:!!|||! !||||||!.!|||: ProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheV 279094 : CCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCG : 279153 206 : leValAsnSerSerThrValGlyAlaPheSerLeuAlaIleValPheAlaAlaHisAl : 224 !!:!! !!||| !||||||||||||! !|||||| ! !||||||!.! !|||!. alLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisVa 279154 : TTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGT : 279210 225 : aTyrGlyGlnLeuAsnValLeuIleThrTrpIleArgGluLeuValAsnGluSerArg : 243 !! !||||||!!!!..:!!|||:!:||| !:!: !:!!|||:!!:!!! ! !!:! lCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLys 279211 : CTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAA : 279267 244 : GlyArg<->AspArgAsnValTyrLeuLysGluIleGlyValValValAspAsnHisL : 262 |||||| ..! !!:!..!:!! !:!!..!:!:|||! !:!!:!!!!::!!|||| GlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisL 279268 : GGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATC : 279327 263 : euArgAlaLeu{Se} >>>> Target Intron 1 >>>> {r}PheIleSerTy : 270 ||!:! !|||{.!} 571 bp {!}||||||||| ! euLysIleLeu{Gl}++ ++{y}PheIleSerGl 279328 : TGAAGATACTG{GG}gt.........................ag{T}TTTATATCGCA : 279922 271 : rIleGluAspMetMetThrGluIleCysPheLeuGluLeuPheLysCysThrPheAsn : 289 ||||||! :!::!!!.!||||||||||||:!!|||:!!.!! ||||||!!.||| nIleGluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsn 279923 : AATCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAAC : 279979 290 : IleCysMetLeuGlyTyrTyrValLeuMet >>>> Target Intron 2 >>>> : 300 ||||||.!.||| !||||||:!!|||! ! 80 bp IleCysPheLeuThrTyrTyrLeuLeuThr++ + 279980 : ATATGCTTTTTGACATATTATTTACTCACGgt.........................a : 280090 301 : HisTrpAlaAsnArgAspTyrGlnAsnMetThrIleCysValValIleLeuCysSer : 318 .!.|||! !.!.!.!||| ! !...! ! !! ! !:!!:!!.!!||| ||| +GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleSer 280091 : gGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCT : 280146 319 : MetAlaPheAsnIlePheIleValCysTyrIleGlyGluLysLeuSerGluGln >> : 337 :!:.!!||||||:!!||||||:!!|||||||||||||||! |||||||||||| LeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 280147 : TTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt.. : 280205 338 : >> Target Intron 3 >>>> CysLysAsnValGlyAspSerValTyrMetThr : 347 74 bp ||| !!!.||||||! |||..!||||||! ! ++CysLeuLysValGlyValSerThrTyrMetIle 280206 : .......................agTGCTTAAAAGTCGGCGTGTCAACTTACATGATC : 280307 348 : AsnTrpTyrTyrLeuProAspLysHisIleLeuAspLeuLeuLeuIleIleSerArgS : 367 :!!|||||| !||||||! ||| ! !! !! !|||:!!||||||.!!:!! !| AspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaValS 280308 : GACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCGTGT : 280367 368 : erSerThrValIleLysMetThrAlaGlyLysPheValThrMetSerIleTyrThrPh : 386 ||!:!:!! !||||||:!:||||||||||||.!!:!! !:!:|||:!! !!:!|| erAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPh 280368 : CGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTT : 280424 387 : eAlaSer >>>> Target Intron 4 >>>> ValValLysThrAlaPheAlaT : 396 |..!||| 71 bp |||:!!|||||||||||||||| eCysSer++ ++ValLeuLysThrAlaPheAlaT 280425 : CTGCAGCgt.........................agGTGTTAAAAACGGCATTCGCAT : 280525 397 : yrLeuAsnValLeuArgGlnThrThr : 404 |||||!:!:!!|||||| ! !||| yrLeuSerLeuLeuArgThrLeuThr 280526 : ATCTGAGCTTATTACGTACGCTTACC : 280551 vulgar: gi|383850718|ref|XP_003700923.1| 15 404 . KQ414889.1 278576 280551 + 617 M 19 57 G 0 6 M 34 102 G 0 3 M 48 144 G 0 3 M 49 147 G 1 0 M 79 237 G 0 3 M 20 60 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 280551 617 + . gene_id 8 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278577 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279340 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280551 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278577 280551 617 + . alignment_id 8 ; Query gi|383850718|ref|XP_003700923.1| ; Align 278577 16 57 ; Align 278640 35 102 ; Align 278745 69 144 ; Align 278892 117 147 ; Align 279039 167 237 ; Align 279279 246 60 ; Align 279913 267 99 ; Align 280092 300 111 ; Align 280277 337 156 ; Align 280504 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 581 Query range: 4 -> 281 Target range: 236819 -> 237644 5 : IleIleArgThrAspLeuAspSerLeuPheAspTyrSerLeuGlnLeuAsnLysTrpL : 24 :!!! !..!! !:!!:!! !:!! ! !|||||||||||||||! !|||::!||| ValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpA 236820 : GTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGG : 236877 25 : euLeuIleProIleGlyAlaTrpProSerThrThrSerLysIleGluArgValValSe : 43 !:!!! ! !||||||.!!||||||..! !:!!|||!!.:!!|||||| !:!!|| laMetLysSerIleGlyThrTrpProGlnPheSerSerAsnLeuGluArgAsnIleSe 236878 : CGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGAACCTCGAGAGAAACATCTC : 236934 44 : rLeuIleLeuIleValValSerTyrCysSerIleLeuThrThrValValProCysIle : 62 |! !||||||! !|||:!!!!!||| !:!!|||||| !:!!:!!:!!|||||| rArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSer 236935 : TCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCG : 236991 63 : LeuTyrValIleLeuAspAspAspLeuLeuThrGlnLysLeuMetMetValGlyProL : 82 |||:!!:!!!!:|||!!: ! ! !!!! ! !|||:!!! !!::!!||| !!| LeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerL 236992 : TTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGT : 237051 83 : euSerHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgLysLysGl : 101 ||||||||||| ! .!! !! !|||!:!||||||! !||||||||||||:::||| euSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysTh 237052 : TGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAAC : 237108 102 : uIleGlnCysCysValLysHisIleHisMetGlnThrAspTrpArgSerValThrLys : 120 |||!:: !! ! !!!!. ||||||:!!||||||||||||!!!..!|||::: rIleArgHisPhePheAsn------HisMetGluThrAspTrpArgThrThrThrArg 237109 : CATACGTCACTTTTTCAAT------CATATGGAGACCGATTGGAGAACGACGacgaga : 237159 121 : SerLysAspGlnGluIleMetLeuLysAspAlaGluPheGlyArgTyrValValIleP : 140 ...::: :::|||:::||||||||| !!|||:!!|||.!!||||||!.!!.!|||! LysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleS 237160 : aaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTT : 237219 141 : heCysThrAlaPheMetGlnGlyGlyValLeuCysTyrCysValIleThrGlyPheTh : 159 !|||||| !|||!!:!!.||||||:!!||| ! |||||||||!!:|||!.!! !|| erCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaSerTh 237220 : CTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTCCAC : 237276 160 : rThrGluValIleGlnValGlyAsnGluThrArgThrIleArgMetLeuProCysAla : 178 |||| !|||:!! !|||||||||:!!|||! !! !:!:|||:!!||||||! !! rThrMetValValValValGlyAsnLysThrThrIleLeuArgValLeuProLeuPro 237277 : CACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGCGTGCTGCCCTTACCA : 237333 179 : AlaTyrLysLysLeuIleProValAspThrSerProThrAsnGluIleIleLeuPheV : 198 !|||||| !|||:!!||||||||||||!:! !!! !|||!!:|||:!!:!!!!. MetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnAspIleValValLeuS 237334 : ATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGACATCGTTGTTTTGT : 237393 199 : alGlnPheLeuAlaGlyPheIleValAsnSerSerThrValGlyAlaPheSerLeuAl : 217 !|||||||||:!!|||||||||!.!|||!:!|||.!!:!!.!!!.!.!.||||||.! erGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSerValIleSerLeuTh 237394 : CACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAGTGTTATAAGCCTTAC : 237450 218 : aIleValPheAlaAlaHisAlaTyrGlyGlnLeuAsnValLeuIleThrTrpIleArg : 236 !! !!.!.!..!!:!!||||||! !|||||||||!:!|||:!!!!: !! !|||..! rSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValValMetLeuSerIleGlu 237451 : AAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTTATGTTGTCGATCGAA : 237507 237 : GluLeuValAsnGluSerArgGlyArgAspArgAsnValTyrLeuLysGluIleGlyV : 256 !!:!!!|||!:!|||:!!||| !!|||! !:!:!!! !:!!!!! ! |||||| !. AspPheValSerGluAlaArgArgArgGlyLysAspAspHisPheAspGluIleProT 237508 : GATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGA : 237567 257 : alValValAspAsnHisLeuArgAlaLeuSerPheIleSerTyrIleGluAspMetMe : 275 .!:!!|||!!:.!.|||||||||!.!|||!.!! :!!!!!! :!:!!: !!::! hrIleValGluGluHisLeuArgValLeuLys***ValCysLeuLeuAspLeuIleLe 237568 : CAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAGTATGTTTGTTGGATTTGATTTT : 237624 276 : tThrGluIleCysPheLeu : 281 ! ! ! ! |||||| uLeuMetGlyValPheLeu 237625 : GCTGATGGGTGTGTTTCTC : 237644 vulgar: gi|383850718|ref|XP_003700923.1| 4 281 . KQ414889.1 236819 237644 + 581 M 103 309 G 2 0 M 172 516 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236820 237644 581 + . gene_id 9 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236820 237644 . + . KQ414889.1 exonerate:protein2genome:local exon 236820 237644 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236820 237644 581 + . alignment_id 9 ; Query gi|383850718|ref|XP_003700923.1| ; Align 236820 5 309 ; Align 237129 110 516 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 522 Query range: 8 -> 404 Target range: 217153 -> 219803 9 : AspLeuAspSerLeuPheAspTyrSerLeuGlnLeuAsnLysTrpLeuLeuIleProI : 28 !!: :::... ...::: |||:!!|||! !|||:::|||||||||! !|||! GluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProM 217154 : GAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGA : 217211 29 : leGlyAlaTrpProSer<-><->ThrThrSerLysIleGluArgValValSerLeuIl : 45 !:||| !||||||!:! ||||||!!!!:! !..!!:!:!!:!!! ! !:! etGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLe 217212 : TGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACT : 217268 46 : eLeuIleValValSerTyrCysSerIleLeuThrThrValValProCysIleLeuTyr : 64 ::!!! !!.!:!!!!!||| !!! !||| ! ! ! !!||||||||| !:!!||| uIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyr 217269 : GATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTAC : 217325 65 : ValIleLeuAspAspAspLeuLeuThrGlnLysLeuMetMetValGlyProLeuSerH : 84 |||.!!|||!!:! !!!: !||| !.!.||||||! :!! !!|||||||||! ! ValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIleP 217326 : GTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCT : 217385 85 : isTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgLysLysGluIleGl : 103 !!! ! !!:!.! !:!!!!.||| !:!!|||:!!:!!!.!||| !!!:|||!: heCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleAr 217386 : TCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCG : 217442 104 : nCysCysValLysHisIleHisMetGlnThrAspTrpArgSerValThrLysSerLys : 122 : ||||||!:!...||| :!! !|||||||||!:!|||! ! ..!||| gGluCysValArgArgIle------GluArgAspTrpArgAsnValArgCysGluLys 217443 : CGAGTGCGTGAGAAGAATC------GAACGGGACTGGAGGAATGTCAGATGCGAGAAA : 217493 123 : AspGlnGluIleMetLeuLysAspAlaGluPheGlyArgTyrValValIlePheCysT : 142 |||::!||| |||:!! !:!!|||.!.||||||||| ! :!!|||:!!.!!|||| AspArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysT 217494 : GACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTA : 217553 143 : hrAlaPheMetGlnGlyGlyValLeuCysTyrCysValIleThrGlyPheThrThrGl : 161 || !|||||| ! .!!||| ::: ||| ::! !! ! !.!!!:!..!! hrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGl 217554 : CCTTCTTCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGG : 217610 162 : uValIleGlnValGlyAsnGluThrArgThrIleArgMetLeuProCysAlaAlaTyr : 180 ! !|||! ! !! !|||! !!.!! !|||.!!! ! !||| !! ! !! ! yArgIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThr 217611 : GAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACG : 217667 181 : LysLysLeuIleProValAspThrSerProThrAsnGluIleIleLeuPheValGlnP : 200 ||| ! :!!||| !..! ! !!!!|||||||||||||||:!:!!!|||:!!|||! LysTyrIleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnL 217668 : AAGTATATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAAT : 217727 201 : heLeuAlaGlyPheIleValAsnSerSerThrValGlyAlaPheSerLeuAlaIleVa : 219 !.:!!|||||| !:!::!!:!!.!!! !||| !!.!|||! !||||||||| !!. euIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAl 217728 : TGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGC : 217784 220 : lPheAlaAlaHisAlaTyrGlyGlnLeuAsnValLeuIleThrTrpIleArgGluLeu : 238 !||||||!.!||||||! !||||||:!!.!.||||||!!:!.!|||:!:!:!.!.||| aPheAlaValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeu 217785 : TTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTA : 217841 239 : ValAsnGluSerArgGlyArgAspArgAsnValTyrLeuLysGluIleGlyValValV : 258 :!! !!:.!!|||!.! ! !!!:!!..! ! ..!|||!.! !:!!| Ile---AspGlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleV 217842 : ATC---GACGGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCG : 217898 259 : alAspAsnHisLeuArgAlaLeuSerPheIleSerTyrIleGluAspMetMetThrGl : 277 ||..!.!.|||:!!||| !|||!.!! !:!!!!!!! |||! ! ! :!! alSerGlnHisValArgIleLeuLysCysValArg***IleValGlyGluCysSerLe 217899 : TCAGTCAACACGTTCGGATATTAAAGTGTGTAAGATAGATCGTTGGTGAATGCTCGCT : 217955 278 : uIleCysPheLeuGluLeuPhe{Ly} >>>> Target Intron 1 >>>> {s} : 285 !! !!::!!!:!! !.!.{||} 1305 bp {|} uCysPheTrpPheGlnGlyMet{Ly}-+ ++{s} 217956 : TTGTTTTTGGTTTCAGGGGATG{AA}tt.........................ag{a} : 219286 286 : CysThrPheAsnIleCysMetLeuGlyTyrTyrValLeuMetHisTrpAlaAsnArgA : 305 ... ::: ::: ::: !.!.||| !:::!.!| LysTyrIleTyrValAsnLeuTyrLysPheGluTyrGln***GluTrpLysSerAsnA 219287 : aaatatatttacgttaatttgtataaatttgaatatcaatAGGAATGGAAATCGAATG : 219344 306 : spTyrGlnAsnMetThrIleCysValValIleLeuCysSerMetAlaPheAsnIlePh : 324 || !!:! ..!! !! !:!!:!!:!!||| |||:!:...||||||||||| spValThrSerAlaValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePh 219345 : ATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCCTcactttcaacatttt : 219401 325 : eIleValCysTyrIleGlyGluLysLeuSerGluGln >>>> Target Intron : 337 |||| |||||||||||||||! :!!:!!|||||| 73 bp eIlePheCysTyrIleGlyGluIleValAlaGluGln++ 219402 : catattttgctaCATAGGAGAGATCGTTGCTGAACAggt................... : 219442 338 : 2 >>>> CysLysAsnValGlyAspSerValTyrMetThrAsnTrpTyrTyrLeuPr : 353 |||:::...:::|||::: !||||||! !.!.|||||| ||| ! ++CysArgLysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuTh 219443 : ......agTGtaggaaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGAC : 219561 354 : oAspLysHisIleLeuAspLeuLeuLeuIleIleSerArgSerSerThrValIleLys : 372 !! ||| ! ! ||| !:!!|||! !|||:!!! !|||!:!:!! !|||||| rGlyLysLysLysLeuTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLys 219562 : AGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAA : 219618 373 : MetThrAlaGlyLysPheValThrMetSerIleTyrThrPheAlaSer >>>> Tar : 389 :!!|||||||||!!..!.||| !:!!|||||| !||||||.!!..! LeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPheThrAsp++ 219619 : TTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCACTTTTACCGACgt........ : 219671 390 : get Intron 3 >>>> ValValLysThrAlaPheAlaTyrLeuAsnValLeuArg : 401 87 bp ||||||||||||||| !!.!!!:!||||||||||||||| ++ValValLysThrAlaValThrPheLeuAsnValLeuArg 219672 : .................agGTCGTTAAGACTGCAGTCACGTTTCTGAATGTACTACGA : 219792 402 : GlnThrThr : 404 ! !||| ThrLeuThr 219793 : ACATTGACT : 219803 vulgar: gi|383850718|ref|XP_003700923.1| 8 404 . KQ414889.1 217153 219803 + 522 M 25 75 G 0 6 M 76 228 G 2 0 M 128 384 G 1 0 M 44 132 S 0 2 5 0 2 I 0 1301 3 0 2 S 1 1 M 51 153 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 83 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217154 219803 522 + . gene_id 10 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217154 217980 . + . KQ414889.1 exonerate:protein2genome:local exon 217154 217980 . + . insertions 6 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 217981 217982 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 217981 219285 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219284 219285 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219286 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219286 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219668 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219668 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219669 219670 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219669 219755 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219754 219755 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219756 219803 . + . KQ414889.1 exonerate:protein2genome:local exon 219756 219803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217154 219803 522 + . alignment_id 10 ; Query gi|383850718|ref|XP_003700923.1| ; Align 217154 9 75 ; Align 217235 34 228 ; Align 217463 112 384 ; Align 217847 241 132 ; Align 219287 286 153 ; Align 219513 337 156 ; Align 219756 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 382 Query range: 5 -> 271 Target range: 221348 -> 222143 6 : IleArgThrAspLeuAspSerLeuPheAspTyrSerLeuGlnLeuAsnLysTrpLeuL : 25 :!!..! !|||! ! ! !!! ! ! ! ! |||:!!||||||!:!:::|||:!!| ValGluTyrAspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleL 221349 : GTTGAATACGATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCT : 221406 26 : euIleProIleGlyAlaTrpProSerThrThr<-><->SerLysIleGluArgValVa : 42 ||! |||||||||!.!||||||!:!:!!.!! |||! !:!!|||||| !:! euLysProIleGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLe 221407 : TGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCT : 221463 43 : lSerLeuIleLeuIleValValSerTyrCysSerIleLeuThrThrValValProCys : 61 !! !! !:!::!!! !||||||!!!||| !! !||| ! ! !:!!||||||||| uTyrTrpLeuIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCys 221464 : CTACTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGC : 221520 62 : IleLeuTyrValIleLeuAspAspAspLeuLeuThrGlnLysLeuMetMetValGlyP : 81 ! !|||||||||||||||!!:! !!: !:!! !.!.!:!:!!! :!!:!!|||| SerLeuTyrValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyP 221521 : AGCCTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTC : 221580 82 : roLeuSerHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgLysLy : 100 |||||||| !!! ! !!:!.! !:!!!!.||| ! !|||:!!||| !:!!!! roLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAs 221581 : CGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAA : 221637 101 : sGluIleGlnCysCysValLysHisIleHisMetGlnThrAspTrpArgSerValThr : 119 .!!:|||!:: |||:!!:!!!.!||| :!! !||||||!:!!:!:!!||| nAspIleArgGluCysIleGluArgIle------GluTrpAspTrpLysAsnIleThr 221638 : CGACATCCGTGAGTGCATCGAGCGCATC------GAATGGGATTGGAAGAATATCACT : 221688 120 : LysSerLysAspGlnGluIleMetLeuLysAspAlaGluPheGlyArgTyrValValI : 139 ! |||||||||:!!!!:||||||:!!:!!:!!||| ||||||||| :!!:!!! TyrSerLysAspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleM 221689 : TACTCCAAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCA : 221748 140 : lePheCysThrAlaPheMetGlnGlyGlyValLeuCysTyrCysValIleThrGlyPh : 158 !:.!!|||||| !|||||| ! .!!||| ::: ||| ::! !! ! !|| etIleCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPh 221749 : TGATCTGCACATTTTTCATGTACAGTggtttcgttttttattacatAGCCATACCGTT : 221805 159 : eThrThrGluValIleGlnValGlyAsnGluThrArgThrIleArgMetLeuProCys : 177 |!:!..!! !|||! !.! !:!! ... |||... :!! !! ! eSerValGlyLysIleProAlaGlnAspValAsnValThrPheIleProMetValPhe 221806 : TAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTT : 221862 178 : AlaAlaTyrLysLysLeuIleProValAspThrSerProThrAsnGluIleIleLeuP : 197 !! !! !:! :!!:!! !..! !||||||..!|||||||||:!:!!!! ProPheSerArgPheIleValAspThrArgTyrSerProValAsnGluIleLeuPheS 221863 : CCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCT : 221922 198 : heValGlnPheLeuAlaGlyPheIleValAsnSerSerThrValGlyAlaPheSerLe : 216 :!!|||.!!:!!|||||| !:!::!!:!!|||! !||| !!.!|||! !||||| erLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLe 221923 : CGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTT : 221979 217 : uAlaIleValPheAlaAlaHisAlaTyrGlyGlnLeuAsnValLeuIleThrTrpIle : 235 |!.! !:!!||||||!.!||||||! !||||||:!!.!.||||||!!:!:!|||:!: uValAlaMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeu 221980 : GGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTG : 222036 236 : ArgGluLeuValAsnGluSerArgGlyArgAspArgAsnValTyrLeuLysGluIleG : 255 !:!.!.|||:!!|||! !! !! !! ! !!.!|||||| !! !:!..!|||! LysHisLeuIleAsnGlyArgAlaAspMetCysAsnAsnValAsp---ArgArgIleA 222037 : AAACATTTGATCAACGGCCGGGCGGATATGTGTAACAACGTGGAT---AGGAGAATAG : 222093 256 : lyValValValAspAsnHisLeuArgAlaLeuSerPheIleSerTyrIle : 271 .! !:!!|||:!!.!.|||:!!||| !|||..!!:!:!! !!! !||| laLysIleValAsnGlnHisValArgIleLeuGlnTyrValArgCysIle 222094 : CGAAGATTGTGAATCAACACGTTCGAATATTGCAGTATGTACGTTGTATC : 222143 vulgar: gi|383850718|ref|XP_003700923.1| 5 271 . KQ414889.1 221348 222143 + 382 M 30 90 G 0 6 M 74 222 G 2 0 M 139 417 G 1 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221349 222143 382 + . gene_id 11 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221349 222143 . + . KQ414889.1 exonerate:protein2genome:local exon 221349 222143 . + . insertions 6 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 221349 222143 382 + . alignment_id 11 ; Query gi|383850718|ref|XP_003700923.1| ; Align 221349 6 90 ; Align 221445 36 222 ; Align 221667 112 417 ; Align 222084 252 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 360 Query range: 299 -> 404 Target range: 277371 -> 277842 300 : HisTrpAlaAsnArgAspTyrGlnAsnMetThrIleCysValValIleLeuCysSerM : 319 .!.|||:!!:!!!!!||| !|||!..||||||! ! !!:!!|||||| |||| GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 320 : etAlaPheAsnIlePheIleValCysTyrIleGlyGluLysLeuSerGluGln >>> : 337 ||...|||||||||||| !||||||||||||||||||! !|||!!!|||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 338 : > Target Intron 1 >>>> CysLysAsnValGlyAspSerValTyrMetThrA : 348 72 bp ||||||!!.||||||!!: !||||||||||||| ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 349 : snTrpTyrTyrLeuProAspLysHisIleLeuAspLeuLeuLeuIleIleSerArgSe : 367 ||||||||||||||||||||||| !!||||||:!!||||||||||||||||||||||| snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 368 : rSerThrValIleLysMetThrAlaGlyLysPheValThrMetSerIleTyrThrPhe : 386 |||| |||||||||:::||||||||||||...::: ||||||:!:||||||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 387 : AlaSer >>>> Target Intron 2 >>>> ValValLysThrAlaPheAlaTy : 396 !.!..! 84 bp |||:!!||||||.!!|||||||| GlyAsp++ ++ValIleLysThrThrPheAlaTy 277703 : GGCGATgt.........................agGTAATAAAAACCACTTTCgcgta : 277816 397 : rLeuAsnValLeuArgGlnThrThr : 404 |||||||:::||||||||||||||| rLeuAsnIleLeuArgGlnThrThr 277817 : tttaaatattctacgCCAAACGACG : 277842 vulgar: gi|383850718|ref|XP_003700923.1| 299 404 . KQ414889.1 277371 277842 + 360 M 37 111 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277842 360 + . gene_id 12 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277842 360 + . alignment_id 12 ; Query gi|383850718|ref|XP_003700923.1| ; Align 277372 300 111 ; Align 277555 337 156 ; Align 277795 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 351 Query range: 14 -> 268 Target range: 212869 -> 213628 15 : AspTyrSerLeuGlnLeuAsnLysTrpLeuLeuIleProIleGlyAlaTrpPro<->< : 33 ::: |||::: !! !|||:::|||||||||! !|||! ||| !|||||| AsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspL 212870 : aatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACA : 212927 34 : ->SerThrThrSerLysIleGluArgValValSerLeuIleLeuIleValValSerTy : 51 ||| !..!||| !||||||!:! !:!!:!!! !:!::!!! !..!|||!!!|| ysSerTyrValSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTy 212928 : AGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTA : 212984 52 : rCysSerIleLeuThrThrValValProCysIleLeuTyrValIleLeuAspAspAsp : 70 | !!! !||| ! ! !|||:!!||||||! !|||||||||.!!||||||! ::: rGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGlu 212985 : CGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgag : 213041 71 : LeuLeuThrGlnLysLeuMetMetValGlyProLeuSerHisTrpPheIleGlyGlyI : 90 ::: :::::::!! :!! !!||| !!!!:!! !!! ! !!.! ! AsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuT 213042 : aatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGT : 213101 91 : leAsnTyrThrThrLeuLeuLeuArgLysLysGluIleGlnCysCysValLysHisIl : 109 !!.||| !:!!|||:!!|||!.! ! !!:|||!:: ||||||:!! rpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysValGlu----- 213102 : GGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAG----- : 213155 110 : eHisMetGlnThrAspTrpArgSerValThrLysSerLysAspGlnGluIleMetLeu : 128 ||||||:!! !||||||!:!!:!:!!||| ! ..!:!!|||:!!||||||||| ! -HisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetAla 213156 : -CATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCG : 213209 129 : LysAspAlaGluPheGlyArgTyrValValIlePheCysThrAlaPheMetGlnGlyG : 148 !:!!|||...||||||!:! :!!|||! !.!!|||.!! !|||||| ! !| LeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPhePheMetTyrThrG 213210 : TTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAG : 213269 149 : lyValLeuCysTyrCysValIleThrGlyPheThrThrGluValIleGlnValGlyAs : 167 || !! !! !|||! !:!!:!!..! !.!!!:!.!!!!: !!!: !!.!! !:! lyPheThrPheTyrPheLeuValValProIleSerAlaAspLysMetValAlaGluAs 213270 : GTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGA : 213326 168 : nGluThrArgThrIleArgMetLeuProCysAlaAlaTyrLysLysLeuIleProVal : 186 ! !.! !|||.!!|||...:!! ! ! !!!.!! !:! :!!:!! !||| pLeuAsnValThrPheArgGlnMetValValProValSerArgPheIleValAspVal 213327 : TCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTT : 213383 187 : AspThrSerProThrAsnGluIleIleLeuPheValGlnPheLeuAlaGlyPheIleV : 206 !||||||..!|||||||||.!!!!!!!.:!!|||.!!:!!|||||| ! :!:: ArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuI 213384 : CGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGA : 213443 207 : alAsnSerSerThrValGlyAlaPheSerLeuAlaIleValPheAlaAlaHisAlaTy : 225 !!:!!:!!! !.!!|||! !|||! !||||||||| !|||||||||!.!||||||! leHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCy 213444 : TTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTG : 213500 226 : rGlyGlnLeuAsnValLeuIleThrTrpIleArgGluLeuValAsnGluSerArgGly : 244 !||||||:!!..!:!!|||!!:!:!|||:!:..!.!.|||:!!:!!! !!!..!! ! sGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGlyArgGluAsp 213501 : CGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGTAGAGAGGAT : 213557 245 : ArgAspArgAsnValTyrLeuLysGluIleGlyValValValAspAsnHisLeuArgA : 264 ! !..!!:!|||||| !! ! ..!|||!.!|||:!!|||:!!.!.|||:!!||| MetSerLysAsnValAsp---AspArgIleAlaValIleValAsnGlnHisValArgI 213558 : ATGAGCAAGAATGTGGAC---GACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGA : 213614 265 : laLeuSerPheIle : 268 !|||!.!!:::!: leLeuLysTrpVal 213615 : TACTGAAGTGGGTG : 213628 vulgar: gi|383850718|ref|XP_003700923.1| 14 268 . KQ414889.1 212869 213628 + 351 M 18 54 G 0 6 M 75 225 G 2 0 M 141 423 G 1 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212870 213628 351 + . gene_id 13 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212870 213628 . + . KQ414889.1 exonerate:protein2genome:local exon 212870 213628 . + . insertions 6 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 212870 213628 351 + . alignment_id 13 ; Query gi|383850718|ref|XP_003700923.1| ; Align 212870 15 54 ; Align 212930 33 225 ; Align 213155 110 423 ; Align 213578 252 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 339 Query range: 299 -> 404 Target range: 272836 -> 273302 300 : HisTrpAlaAsnArgAspTyrGlnAsnMetThrIleCysValValIleLeuCysSerM : 319 .!.|||.!!:!!!.!|||!:!|||!:!:!:|||! ! ! !!:!!|||||| |||| GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 320 : etAlaPheAsnIlePheIleValCysTyrIleGlyGluLysLeuSerGluGln >>> : 337 ||...|||||||||||||||||||||||||||||||||! !|||!!!|||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 338 : > Target Intron 1 >>>> CysLysAsnValGlyAspSerValTyrMetThrA : 348 70 bp ||||||...:::|||!!: !||||||||||||| ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 349 : snTrpTyrTyrLeuProAspLysHisIleLeuAspLeuLeuLeuIleIleSerArgSe : 367 |||||||||||||||||! !||| !!||||||||||||:!!|||||||||||||||!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 368 : rSerThrValIleLysMetThrAlaGlyLysPheValThrMetSerIleTyrThrPhe : 386 !|||..!|||||||||!!:|||||||||!:!.!.||| !!||||||:!:||||||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 387 : AlaSer >>>> Target Intron 2 >>>> ValValLysThrAlaPheAlaTy : 396 !.!..! 81 bp |||:!!|||!:!||||||||||| GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 397 : rLeuAsnValLeuArgGlnThrThr : 404 |||||||:!!||||||||||||||| rLeuAsnMetLeuArgGlnThrThr 273277 : CTTAAATATGCTACGACAAACGACA : 273302 vulgar: gi|383850718|ref|XP_003700923.1| 299 404 . KQ414889.1 272836 273302 + 339 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273302 339 + . gene_id 14 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273302 339 + . alignment_id 14 ; Query gi|383850718|ref|XP_003700923.1| ; Align 272837 300 111 ; Align 273018 337 156 ; Align 273255 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 295 Query range: 6 -> 271 Target range: 226903 -> 227695 7 : ArgThrAspLeuAspSerLeuPheAspTyrSerLeuGlnLeuAsnLysTrpLeuLeuI : 26 ..!!.!|||! !.!...!! !!!.:!! |||:!!|||||||||:::|||||||||! GluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuL 226904 : GAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGA : 226961 27 : leProIleGlyAlaTrpProSerThr<-><->ThrSerLysIleGluArgValValSe : 43 !|||:!!||| !|||||||||:!! !:!|||::!|||! !||| ! !!|| ysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSe 226962 : AACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTC : 227018 44 : rLeuIleLeuIleValValSerTyrCysSerIleLeuThrThrValValProCysIle : 62 |! !:!::!! ! !!:!!!!!|||... !!!: ! ! !:!!||| !! !! ! rTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGly 227019 : CTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGC : 227075 63 : LeuTyrValIleLeuAspAspAspLeuLeuThrGlnLysLeuMetMetValGlyProL : 82 |||||||||:!!|||!!:! ! ! ! !.!.! !|||! |||:!!||||||: LeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProM 227076 : TTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGA : 227135 83 : euSerHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgLysLysGl : 101 !!||| !!:: !!:..! !:!!!!.|||:!!! !||| !!!!!.!:!! ! !! etSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAs 227136 : TGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGA : 227192 102 : uIleGlnCysCysValLysHisIleHisMetGlnThrAspTrpArgSerValThrLys : 120 :|||! ||||||:!!!..||| :!! !||||||!:!!:!:!!! ! ! pIleLeuGluCysValGluArgIle------LysTrpAspTrpLysAsnIleArgTyr 227193 : CATTCTCGAGTGCGTCGAACGGATC------AAATGGGACTGGAAGAATATCAGATAC : 227243 121 : SerLysAspGlnGluIleMetLeuLysAspAlaGluPheGlyArgTyrValValIleP : 140 !:!!|||::!.!.:!:|||:!!! ! !!||| ! !:!|||||| ! :!!:!!! !. LeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrI 227244 : CTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTA : 227303 141 : heCysThrAlaPheMetGlnGlyGlyValLeuCysTyrCysValIleThrGlyPheTh : 159 !!|||||| !|||:!: ...... ::: ::: :!!:!!..! !.!!!. leCysThrPhePheValPheSerSerPheValPhePheTyrIleValValProIleAs 227304 : TTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAA : 227360 160 : rThrGluValIleGlnValGlyAsnGluThrArgThrIleArgMetLeuProCysAla : 178 !.!!! ! !:!! !..!! !:!!! !!.!!.!!:! !! !..!:!!|||! ! !! nAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPhePro 227361 : CGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCG : 227417 179 : AlaTyrLysLysLeuIleProValAspThrSerProThrAsnGluIleIleLeuPheV : 198 ! |||! :!! ! !||| ! !|||||| !|||||||||.!!!!!! | PheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerV 227418 : TTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGG : 227477 199 : alGlnPheLeuAlaGlyPheIleValAsnSerSerThrValGlyAlaPheSerLeuAl : 217 ||||||||:!!.!!|||.!!:!::!!:!!.!! !||| !!.!|||! !|||:!!|| alGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAl 227478 : TACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGC : 227534 218 : aIleValPheAlaAlaHisAlaTyrGlyGlnLeuAsnValLeuIleThrTrpIleArg : 236 | !:!!.!!|||!.!||||||! !||||||:!!.!.||||||:!::!!|||:!: !! aAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGly 227535 : AGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGA : 227591 237 : GluLeuValAsnGluSerArgGlyArgAspArgAsnValTyrLeuLysGluIleGlyV : 256 .!.|||:!! !!:.!!|||!.! ! !!!!!...! ! ! ..!|||!.! HisLeuIle---AspGlyArgAlaAspMetSerLysThrLeuAspAspArgIleAlaS 227592 : CATTTGATC---GACGGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTA : 227648 257 : alValValAspAsnHisLeuArgAlaLeuSerPheIleSerTyrIle : 271 !:!!||| !:!!|||:!!||| !|||!.!! !:!!!!!! !||| erIleValThrHisHisValArgIleLeuLysCysValThrCysIle 227649 : GCATCGTCACTCACCACGTTCGAATATTGAAGTGTGTAACGTGTATC : 227695 vulgar: gi|383850718|ref|XP_003700923.1| 6 271 . KQ414889.1 226903 227695 + 295 M 28 84 G 0 6 M 75 225 G 2 0 M 128 384 G 1 0 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226904 227695 295 + . gene_id 15 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226904 227695 . + . KQ414889.1 exonerate:protein2genome:local exon 226904 227695 . + . insertions 6 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 226904 227695 295 + . alignment_id 15 ; Query gi|383850718|ref|XP_003700923.1| ; Align 226904 7 84 ; Align 226994 35 225 ; Align 227219 112 384 ; Align 227603 241 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 274 Query range: 299 -> 402 Target range: 254071 -> 254561 300 : HisTrpAlaAsnArgAspTyrGlnAsnMetThrIleCysValValIleLeuCysSerM : 319 .!.|||.!!.!.!!!||| !|||! :!: !! ! !:!!|||! !||| !:!!: GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaV 254072 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTG : 254129 320 : etAlaPheAsnIlePheIleValCysTyrIleGlyGluLysLeuSerGluGln >>> : 337 !:!.! ||| |||::::::|||||||||.!!!!:!:!|||!!!|||||| alValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 254130 : TTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt... : 254185 338 : > Target Intron 1 >>>> CysLysAsnValGlyAspSerValTyrMetThrA : 348 92 bp ||| !!!.||||||!!: !||||||||||||: ++CysLeuLysValGlyGluValValTyrMetThrA 254186 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 254308 349 : snTrpTyrTyrLeuProAspLysHisIleLeuAspLeuLeuLeuIleIleSerArgSe : 367 !!|||||||||||||||.!.!:!...||||||||||||:!!|||||||||!!!||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSe 254309 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATC : 254365 368 : rSerThrValIleLysMetThrAlaGlyLysPheValThrMetSerIleTyrThrPhe : 386 |!:!..!|||:!!:!!!!:||||||||||||... ||||||:!!||||||||| rAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPhe 254366 : GAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTC : 254422 387 : AlaSer >>>> Target Intron 2 >>>> ValValLysThrAlaPheAlaTy : 396 !.!..! 89 bp ||||||||||||!.!|||||||| GlyAsp++ ++ValValLysThrGlyPheAlaTy 254423 : GGCGATgt.........................agGTAGTAAAAACAGGATTCGCCTA : 254541 397 : rLeuAsnValLeuArgGln : 402 |||||||:!!||| !!||| rLeuAsnMetLeuCysGln 254542 : CTTGAATATGCTTTGTCAA : 254561 vulgar: gi|383850718|ref|XP_003700923.1| 299 402 . KQ414889.1 254071 254561 + 274 M 37 111 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254072 254561 274 + . gene_id 16 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254072 254182 . + . KQ414889.1 exonerate:protein2genome:local exon 254072 254182 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254183 254184 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254183 254274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254273 254274 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254275 254430 . + . KQ414889.1 exonerate:protein2genome:local exon 254275 254430 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254431 254432 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254431 254519 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 254518 254519 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254520 254561 . + . KQ414889.1 exonerate:protein2genome:local exon 254520 254561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254072 254561 274 + . alignment_id 16 ; Query gi|383850718|ref|XP_003700923.1| ; Align 254072 300 111 ; Align 254275 337 156 ; Align 254520 389 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 267 Query range: 299 -> 402 Target range: 244441 -> 244945 300 : HisTrpAlaAsnArgAspTyrGlnAsnMetThrIleCysValValIleLeuCysSerM : 319 .!.||||||.!.!!!||| !:!!! !:!:! !! ! ! !!:!! !||| !:!!! GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheIleAlaLeuValAlaI 244442 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTATAGCACTCGTTGCTA : 244499 320 : etAlaPheAsnIlePheIleValCysTyrIleGlyGluLysLeuSerGluGln >>> : 337 !:!.!! !|||! !||||||:!!|||||||||.!!!!:!:!|||!!!|||||| leValSerAsnThrPheIleLeuCysTyrIleSerAspArgLeuThrGluGln++ 244500 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGACAGGCTGACAGAACAGgt... : 244555 338 : > Target Intron 1 >>>> CysLysAsnValGlyAspSerValTyrMetThrA : 348 106 bp ||| !!!.||||||!!: !||||||||||||: ++CysLeuLysValGlyGluValValTyrMetThrA 244556 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 244692 349 : snTrpTyrTyrLeuProAspLysHisIleLeuAspLeuLeuLeuIleIleSerArgSe : 367 !!|||||||||||||||.!.!:!...||||||||||||:!!|||||||||!.!||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSe 244693 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATC : 244749 368 : rSerThrValIleLysMetThrAlaGlyLysPheValThrMetSerIleTyrThrPhe : 386 |!:!! !|||:!!:!!!!:|||||||||||| ! :!! !||||||:!!||||||||| rAsnMetValValGluIleThrAlaGlyLysValLeuHisMetSerLeuTyrThrPhe 244750 : GAACATGGTCGTTGAAATCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTC : 244806 387 : AlaSer >>>> Target Intron 2 >>>> ValValLysThrAlaPheAlaTy : 396 !.!..! 89 bp ||||||||||||!.!|||||||| GlyAsp++ ++ValValLysThrGlyPheAlaTy 244807 : GGCGATgt.........................agGTAGTAAAAACAGGATTCGCCTA : 244925 397 : rLeuAsnValLeuArgGln : 402 |||||||:!!||| !!||| rLeuAsnMetLeuCysGln 244926 : CTTGAATATGCTTTGTCAA : 244945 vulgar: gi|383850718|ref|XP_003700923.1| 299 402 . KQ414889.1 244441 244945 + 267 M 37 111 5 0 2 I 0 102 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244442 244945 267 + . gene_id 17 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244442 244552 . + . KQ414889.1 exonerate:protein2genome:local exon 244442 244552 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244553 244554 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244553 244658 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244657 244658 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244659 244814 . + . KQ414889.1 exonerate:protein2genome:local exon 244659 244814 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244815 244816 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244815 244903 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 244902 244903 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244904 244945 . + . KQ414889.1 exonerate:protein2genome:local exon 244904 244945 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244442 244945 267 + . alignment_id 17 ; Query gi|383850718|ref|XP_003700923.1| ; Align 244442 300 111 ; Align 244659 337 156 ; Align 244904 389 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 233 Query range: 335 -> 403 Target range: 264723 -> 265007 336 : GlnCysLysAsnValGlyAspSerValTyrMetThrAsnTrpTyrTyrLeuProAspL : 355 |||||||||!!.||||||!!: !|||||||||:!!|||||||||||||||||| !!| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 356 : ysHisIleLeuAspLeuLeuLeuIleIleSerArgSerSerThrValIleLysMetTh : 374 || !!||||||||||||:!!|||||||||! !|||||||||..!|||.!!|||.!.|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 375 : rAlaGlyLysPheValThrMetSerIleTyrThrPheAlaSer >>>> Target I : 389 ||||||||||.!.:!! !||||||!!:|||||||||::!..! 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 390 : ntron 1 >>>> ValValLysThrAlaPheAlaTyrLeuAsnValLeuArgGlnTh : 403 bp |||:!!|||:!!:!!|||.!!|||||||||:!!||||||||||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArgGlnTh 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGCCAAAC : 265005 404 : r : 403 | r 265006 : G : 265007 vulgar: gi|383850718|ref|XP_003700923.1| 335 403 . KQ414889.1 264723 265007 + 233 M 53 159 5 0 2 I 0 76 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265007 233 + . gene_id 18 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265007 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265007 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265007 233 + . alignment_id 18 ; Query gi|383850718|ref|XP_003700923.1| ; Align 264724 336 159 ; Align 264963 389 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 207 Query range: 299 -> 395 Target range: 238411 -> 238805 300 : HisTrpAlaAsnArgAspTyrGlnAsnMetThrIleCysValValIleLeuCysSerM : 319 .!.||||||.!.!!!||| !:!!! !:!:! !! ! ! !!||| !||| !:!!! GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheValAlaLeuValAlaI 238412 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTGTAGCACTCGTTGCTA : 238469 320 : etAlaPheAsnIlePheIleValCysTyrIleGlyGlu{L} >>>> Target Int : 332 !:!.!! !|||! !||||||:!!|||||||||.!!|||{!} 106 b leValSerAsnThrPheIleLeuCysTyrIleSerGlu{A}+- 238470 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGAA{A}gg............... : 238511 333 : ron 1 >>>> {ys}LeuSerGluGlnCysLysAsnValGlyAspSerValTyrMet : 346 p {:!} !!!! !!|||||| !!!.||||||!!: !||||||||| ++{rg}AsnCys***GlnCysLeuLysValGlyGluValValTyrMet 238512 : ..........ag{GA}AATTGTTAACAGTGCTTGAAAGTTGGTGAAGTGGTTTACATG : 238656 347 : ThrAsnTrpTyrTyrLeuProAspLysHisIleLeuAspLeuLeuLeuIleIleSerA : 366 |||:!!|||||||||||||||.!.!:!...||||||||||||:!!|||||||||!.!| ThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysA 238657 : ACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAAC : 238716 367 : rgSerSerThrValIleLysMetThrAlaGlyLysPheValThrMetSerIleTyrTh : 385 |||||!:!..!|||:!!|||:!:|||||||||||| ! :!! !||||||:!!||||| rgSerAsnValValValLysValThrAlaGlyLysValLeuHisMetSerLeuTyrTh 238717 : GATCGAACGTGGTCGTTAAAGTCACCGCTGGAAAAGTATTACATATGTCGCTTTACAC : 238773 386 : rPheAlaSerValValLysThrAlaPheAla : 395 ||||!.!..!||| !:!!||| !.!!||| rPheGlyAspValSerGluThrAsnLeuAla 238774 : GTTCGGCGATGTAAGTGAAACTAATCTTGCT : 238805 vulgar: gi|383850718|ref|XP_003700923.1| 299 395 . KQ414889.1 238411 238805 + 207 M 32 96 S 0 1 5 0 2 I 0 102 3 0 2 S 1 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238412 238805 207 + . gene_id 19 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 238412 238508 . + . KQ414889.1 exonerate:protein2genome:local exon 238412 238508 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238509 238510 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local intron 238509 238614 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 238613 238614 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238615 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238615 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238412 238805 207 + . alignment_id 19 ; Query gi|383850718|ref|XP_003700923.1| ; Align 238412 300 96 ; Align 238617 333 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 200 Query range: 258 -> 389 Target range: 224116 -> 224658 259 : AspAsnHisLeuArgAlaLeuSerPheIleSerTyrIleGluAspMetMetThrGluI : 278 ||| !.!! !!:!..!! !!!!|||:!!!!!:!!! !||| ! :!! !:!!: AspLeuArgSerLysCysCysArgPheLeuThrHisThrGluLysAlaLeuGlnGlnV 224117 : GATTTACGTTCGAAATGTTGCAGATTTTTAACGCACACAGAGAAAGCACTGCAACAAG : 224174 279 : leCysPheLeuGluLeuPheLysCysThrPheAsnIleCysMetLeuGlyTyrTyrVa : 297 !!! |||:!!|||!!!.!. |||! !!!.|||||||||:!:|||||||||||||| alSerPheValGluPheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrVa 224175 : TATCGTTCGTGGAATTTCTAGGCTGCATGTTGAACATATGTCTTCTCGGGTATTACGT : 224231 298 : lLeuMet >>>> Target Intron 1 >>>> HisTrpAlaAsnArgAspTyrG : 307 |:!!:!! 84 bp ...|||:::::: !!! lIleVal++ ++GluTrpSerSerSerHisLeuT 224232 : TATTGTGgt.........................aggagtggagttcgagtcATTTAA : 224345 308 : lnAsnMetThrIleCysValValIleLeuCysSerMetAlaPheAsnIlePheIleVa : 326 !:! !..!! !! ! !!:!!:!!||| |||:::...||||||||||||||| hrSerAlaValThrTyrPheIleLeuLeuMetSerLeuThrPheAsnIlePheIlePh 224346 : CTAGCGCGGTGACTTACTTCATACTACTCATGTCtcttactttcaatatttttatatt : 224402 327 : lCysTyrIleGlyGluLysLeuSerGluGlnCysLys{A} >>>> Target Intr : 339 ||||||||||||||| !:!!:!!|||||| |||{!} 65 bp eCysTyrIleGlyGluLeuValAlaGluGlnValLys{L}-+ 224403 : ttgttacatAGGAGAGCTGGTAGCTGAAcaggtgaaa{a}at................ : 224444 340 : on 2 >>>> {sn}ValGlyAspSerValTyrMetThrAsnTrpTyrTyrLeuProA : 354 {!.}:::|||... ! !||||||! !:!!|||||| ||| !!! +-{ys}IleGlyGlnValSerTyrMetIleAspTrpTyrArgLeuThrG 224445 : .........aa{aa}attggacaAGTGTCGTACATGATCGACTGGTATCGGTTGACTG : 224551 355 : spLysHisIleLeuAspLeuLeuLeuIleIleSerArgSerSerThrValIleLysMe : 373 !!. ! ! !||| !! !:!!|||||||||:!!! !|||!:!:!! !||||||:! lyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLe 224552 : GAAATAAGAAACTATGCTGCATTCTGATAATCGCGATGTCCAATTCTTCGATAAAATT : 224608 374 : tThrAlaGlyLysPheValThrMetSerIleTyrThrPheAlaSerVal : 389 !|||||||||!!..!.||| !:!!!!!:!! !||||||!.!..!||| uThrAlaGlyAsnMetValGluLeuCysLeuThrThrPheGlyAspVal 224609 : GACAGCGGGAAACATGGTCGAACTGTGTCTAACCACTTTCGGTGACGTA : 224658 vulgar: gi|383850718|ref|XP_003700923.1| 258 389 . KQ414889.1 224116 224658 + 200 M 41 123 5 0 2 I 0 80 3 0 2 M 39 117 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224117 224658 200 + . gene_id 20 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224117 224239 . + . KQ414889.1 exonerate:protein2genome:local exon 224117 224239 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224240 224241 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224240 224323 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224322 224323 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224324 224441 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224441 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224442 224443 . + . intron_id 2 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local intron 224442 224506 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 224505 224506 . + . intron_id 1 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 224507 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224507 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224117 224658 200 + . alignment_id 20 ; Query gi|383850718|ref|XP_003700923.1| ; Align 224117 259 123 ; Align 224324 300 117 ; Align 224509 340 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 192 Query range: 276 -> 389 Target range: 301617 -> 302036 277 : GluIleCysPheLeuGluLeuPheLysCysThrPheAsnIleCysMetLeuGlyTyrT : 296 .!.:!!||| ::: |||::: |||!!.||| ! .!.||| !! HisLeuCysAlaValIleLysPheGluSerThrLeuAsnAlaLysPheLeuArgValI 301618 : CATCTCTGCgctgtaattaaatttgaatctACTTTAAATGCAAAGTTTTTACGAGTAA : 301675 297 : yrValLeuMetHisTrpAlaAsnArgAspTyrGlnAsnMetThrIleCysValValIl : 315 ! !!!! !.!.||| !|||!!!||| !||| !! !! ! !!..!:! le***Phe***GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLe 301676 : TTTGATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCT : 301732 316 : eLeuCysSerMetAlaPheAsnIlePheIleValCysTyrIleGlyGluLysLeuSer : 334 :||| |||.!..!!||||||||||||||| !!|||||||||||||||! |||||| uLeuThrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSer 301733 : GTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCC : 301789 335 : GluGln >>>> Target Intron 1 >>>> CysLysAsnValGlyAspSerVa : 344 |||||| 80 bp |||!...!.:!!|||...:!! GluGln++ ++CysSerGlnIleGlySerAlaSe 301790 : GAACAGgt.........................agTGTAGCCAAATTGGTTCAGCATC : 301899 345 : lTyrMetThrAsnTrpTyrTyrLeuProAspLysHisIleLeuAspLeuLeuLeuIle : 363 !||| !! !:!!|||||| !!||||||! |||... !! !||||||:!!|||:!! rTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeu 301900 : GTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTT : 301956 364 : IleSerArgSerSerThrValIleLysMetThrAlaGlyLysPheValThrMetSerI : 383 ! ! !! !|||..! ! ! |||:!:||||||||||||.!.:!! !:!:|||: SerValIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerL 301957 : AGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCT : 302016 384 : leTyrThrPheAlaSerVal : 389 !: !!||||||::!|||||| euAsnThrPheSerSerVal 302017 : TGAATACATTCAGCTCTGTA : 302036 vulgar: gi|383850718|ref|XP_003700923.1| 276 389 . KQ414889.1 301617 302036 + 192 M 60 180 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301618 302036 192 + . gene_id 21 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301618 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301618 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301618 302036 192 + . alignment_id 21 ; Query gi|383850718|ref|XP_003700923.1| ; Align 301618 277 180 ; Align 301878 337 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 187 Query range: 334 -> 394 Target range: 283273 -> 283453 335 : GluGlnCysLysAsnValGlyAspSerValTyrMetThrAsnTrpTyrTyrLeuProA : 354 ..!|||||||||!!.||||||!!: !|||||||||||||||! !!:!|||||||||| ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 355 : spLysHisIleLeuAspLeuLeuLeuIleIleSerArgSerSerThrValIleLysMe : 373 ||||| !!||||||:!!||||||||||||||||||||||||||| |||||||||:: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 374 : tThrAlaGlyLysPheValThrMetSerIleTyrThrPheAlaSerValValLysThr : 392 :||||||...|||...::: |||||| |||||||||! !..!||| !..! ! eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspValArgSerLeu 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTACGTTCACTT : 283445 393 : AlaPhe : 394 !||| LeuPhe 283446 : CTTTTT : 283453 vulgar: gi|383850718|ref|XP_003700923.1| 334 394 . KQ414889.1 283273 283453 + 187 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283453 187 + . gene_id 22 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283453 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283453 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283453 187 + . alignment_id 22 ; Query gi|383850718|ref|XP_003700923.1| ; Align 283274 335 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 296 -> 389 Target range: 206041 -> 206401 297 : ValLeuMetHisTrpAlaAsnArgAspTyrGlnAsnMetThrIleCysValValIleL : 316 |||!!! !.!.|||! !|||!.!:!! ! :!:! !:!:! !:!!..!:!:! ValPhe***GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuG 206042 : GTGTTTTAGGAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGC : 206099 317 : euCysSerMetAlaPheAsnIlePheIleValCysTyrIleGlyGluLysLeuSerGl : 335 ! ||| .!!||| !:!!||||||:!!||||||||||||:!! |||! !!! lnIleSerCysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAs 206100 : AGATATCTTGTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGA : 206156 336 : uGln >>>> Target Intron 1 >>>> CysLysAsnValGlyAspSerValT : 345 :||| 81 bp ! ! !|||||| !!! !! pGln++ ++AsnHisValValGlyLeuThrSerC 206157 : TCAAgt.........................agAACCACGTCGTGGGATTGACATCTT : 206267 346 : yrMetThrAsnTrpTyrTyrLeuProAspLysHisIleLeuAspLeuLeuLeuIleIl : 364 !! !..!||||||||| !||||||:!!!:!||| ! !..!:!!:!!|||||||| ysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIl 206268 : GCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAAT : 206324 365 : eSerArgSerSerThrValIleLysMetThrAlaGlyLysPheValThrMetSerIle : 383 |:!!! !|||!:! ! !||||||:!:||||||||||||.!. !! !||||||:!! eAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeu 206325 : TGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTA : 206381 384 : TyrThrPheAlaSerVal : 389 !!:!|||.!!..!||| AlaSerPheThrAspVal 206382 : GCTAGTTTCACCGATGTA : 206401 vulgar: gi|383850718|ref|XP_003700923.1| 296 389 . KQ414889.1 206041 206401 + 157 M 40 120 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206042 206401 157 + . gene_id 23 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206042 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206042 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206042 206401 157 + . alignment_id 23 ; Query gi|383850718|ref|XP_003700923.1| ; Align 206042 297 120 ; Align 206243 337 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 266 -> 336 Target range: 304939 -> 305211 267 : PheIleSerTyrIleGluAspMetMetThrGluIleCysPheLeuGluLeuPheLysC : 286 ||| :!! :!::!! :!!:!! !|||:!!||||||||||||!!!.!! ! PheSerAlaIleValGlnThrValLeuGlnGluValCysPheLeuGluPheIleGlyS 304940 : TTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTTCTTGGAATTCATTGGTT : 304997 287 : ysThrPheAsnIleCysMetLeuGlyTyrTyrValLeuMet >>>> Target Int : 300 !|||!!. ||||||:!:|||! !|||||| !:!!! ! 62 bp erThrLeuLeuIleCysLeuLeuGluTyrTyrCysIleThr++ 304998 : CTACCTTACTGATATGTCTACTTGAATACTACTGTATAACGgt............... : 305041 301 : ron 1 >>>> HisTrpAlaAsnArgAspTyrGlnAsnMetThrIleCysValValI : 315 !!|||! !!:!!!!:!! ! !:!:!:|||! !! !..!|||: ++AspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValL 305042 : ..........agGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGT : 305146 316 : leLeuCysSerMetAlaPheAsnIlePheIleValCysTyrIleGlyGluLysLeuSe : 334 !!||| |||:!:.!!|||||||||||||||:!!|||||||||||||||! |||! euLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMe 305147 : TACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTAT : 305203 335 : rGluGln : 336 !|||:!! tGluLys 305204 : GGAAAAG : 305211 vulgar: gi|383850718|ref|XP_003700923.1| 266 336 . KQ414889.1 304939 305211 + 146 M 33 99 5 0 2 I 0 58 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304940 305211 146 + . gene_id 24 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 304940 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304940 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 0 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304940 305211 146 + . alignment_id 24 ; Query gi|383850718|ref|XP_003700923.1| ; Align 304940 267 99 ; Align 305101 300 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 265 -> 336 Target range: 263671 -> 264648 266 : SerPheIleSerTyrIleGluAspMetMetThrGluIleCysPheLeuGluLeuPheL : 285 |||||||||..! !|||:!!:!!:!!|||!:! !|||||||||:!!|||||||||| SerPheIleAspArgIleLysAsnValMetSerThrIleCysPheValGluLeuPheL 263672 : AGTTTCATAGATCGTATTAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCA : 263729 286 : ysCysThrPheAsnIleCys{Me} >>>> Target Intron 1 >>>> {t}Le : 293 ||..!|||.!.:!!||||||{!!} 764 bp {:}:! ysAlaThrLeuAspIleCys{Il}+- +-{e}Il 263730 : AGGCTACGCTGGATATATGC{AT}gc.........................aa{T}AT : 264517 294 : uGlyTyrTyrValLeuMetHisTrpAlaAsnArgAspTyrGlnAsnMetThrIleCys : 312 ! ! ! !!|||!!!..!.!.|||! !!:!!..||| ||||||:::|||! !! ! eThrIleAspValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyr 264518 : AACAATTGACGTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATAT : 264574 313 : ValValIleLeuCysSerMetAlaPheAsnIlePheIleValCysTyrIleGlyGluL : 332 !!:!!|||||| ||||||..! !|||||||||:!!:!!|||||||||||||||! PheMetIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluI 264575 : TTCATGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGA : 264634 333 : ysLeuSerGluGln : 336 !|||!!!|||||| leLeuThrGluGln 264635 : TATTGACTGAGcag : 264648 vulgar: gi|383850718|ref|XP_003700923.1| 265 336 . KQ414889.1 263671 264648 + 144 M 26 78 S 0 2 5 0 2 I 0 760 3 0 2 S 1 1 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 263672 264648 144 + . gene_id 25 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 263672 263751 . + . KQ414889.1 exonerate:protein2genome:local exon 263672 263751 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263752 263753 . + . intron_id 1 ; splice_site "GC" KQ414889.1 exonerate:protein2genome:local intron 263752 264515 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264514 264515 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 264516 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264516 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 263672 264648 144 + . alignment_id 25 ; Query gi|383850718|ref|XP_003700923.1| ; Align 263672 266 78 ; Align 264517 293 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 15 -> 119 Target range: 303196 -> 303502 16 : TyrSerLeuGlnLeuAsnLysTrpLeuLeuIleProIleGlyAlaTrpProSerThrT : 35 ||| ! !:!!! !!:!||||||:!!|||! !!:!!||| !||||||:!!..! TyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTrpProAlaValL 303197 : TACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTGGCCAGCCGTGT : 303254 36 : hrSerLysIleGluArgValValSerLeuIleLeuIleValValSerTyrCysSerIl : 54 !..!:!!! !! ! !! !!:!! !! !||| !|||! !:!!||| !!! !:! euAspGluThrAlaGlyPheLeuProLysIleThrIleGlyLeuSerAsnLeuValLe 303255 : TGGACGAAACCGCAGGATTCCTACCAAAAATCACCATTGGACTCAGTAATTTGGTTCT : 303311 55 : eLeuThrThrValValProCysIleLeuTyrValIleLeuAspAspAspLeuLeuThr : 73 !||| !||||||:!!||||||||||||:!!:!!|||!!!!!:.!. ! ! !! ! uLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnLysAspThrIle 303312 : ATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAAAGGATACGATA : 303368 74 : GlnLysLeuMetMetValGlyProLeuSerHisTrpPheIleGlyGlyIleAsnTyrT : 93 !!:!|||! :!: !!|||! !|||||| !!! !!.|||..! !!!:!!.||| IleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLeuMetLysTyrT 303369 : ATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTTGATGAAGTATT : 303428 94 : hrThrLeuLeuLeuArgLysLysGluIleGlnCysCysValLysHisIleHisMetGl : 112 !.!!||| ! !|||||| !..!|||:!! |||:!!:!!.!.:!: || rpAlaLeuAlaThrArgLysProArgIleLysGluCysIleGluGluVal------Gl 303429 : GGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAGGTG------CA : 303479 113 : nThrAspTrpArgSerValThr : 119 |!:!||||||!:!..!|||!:! nSerAspTrpLysGluValSer 303480 : AAGTGATTGGAAAGAGGTGAGT : 303502 vulgar: gi|383850718|ref|XP_003700923.1| 15 119 . KQ414889.1 303196 303502 + 137 M 94 282 G 2 0 M 8 24 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303197 303502 137 + . gene_id 26 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 303197 303502 . + . KQ414889.1 exonerate:protein2genome:local exon 303197 303502 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 303197 303502 137 + . alignment_id 26 ; Query gi|383850718|ref|XP_003700923.1| ; Align 303197 16 282 ; Align 303479 112 24 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 335 -> 389 Target range: 292389 -> 292551 336 : GlnCysLysAsnValGlyAspSerValTyrMetThrAsnTrpTyrTyrLeuProAspL : 355 ||| !!!...!.:!!!.! !!:!! !||| |||.!.|||||| !!|||||| : GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 356 : ysHisIleLeuAspLeuLeuLeuIleIleSerArgSerSerThrValIleLysMetTh : 374 :! ! !! !|||:!!:!!|||:!::!!:!!! !!!!!.! ! !||||||:!:|| rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 375 : rAlaGlyLysPheValThrMetSerIleTyrThrPheAlaSerVal : 389 ||||||||||.!. !!..!:!:|||:!: !!||||||!.!:!!||| rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaVal 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTA : 292551 vulgar: gi|383850718|ref|XP_003700923.1| 335 389 . KQ414889.1 292389 292551 + 100 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 292551 100 + . gene_id 27 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292390 292551 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 292551 100 + . alignment_id 27 ; Query gi|383850718|ref|XP_003700923.1| ; Align 292390 336 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1390 Query range: 15 -> 409 Target range: 217156 -> 219803 16 : TyrGluArgAsnValLysLeuSerIleGlnLeuCysHisTrpIleLeuLysProLeuG : 35 ||||||:::|||:::...||||||||||||! ! !!.!|||:!:|||||||||:!!| TyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetG 217157 : tacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGG : 217214 36 : lyValTrpProArgSerThrAsnLeuThrValAlaGlnIleTrpLeuTyrGlnLeuIl : 54 ||:!!||||||!.!||| !!.! !||| !:!!!:!! ! ||||||:!!||||| lyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIl 217215 : GTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGAT : 217271 55 : eAsnValLeuCysTyrAlaPheIleSerPheLeuLeuValProCysSerLeuTyrVal : 73 ||||!.!|||||||||!.!!!.||||||||||||!!!||||||||||||:!!|||||| eAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyrVal 217272 : AAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTG : 217328 74 : IleLeuGluValGluAspValTyrAsnGlnIleLysPhePheGlyProSerSerPheC : 93 .!!|||||||||||||||:!!|||:!!:!!:!:|||.!.|||||||||! !! !|||| PheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheC 217329 : TTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCT : 217388 94 : ysMetMetAlaIleMetLysTyrTyrLeuMetIleLeuHisGluAsnAspIleArgAs : 112 ||:!!||||||.!!:!:|||||||||! !:!!|||:!!|||:!! |||||||||!! ysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGl 217389 : GCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGA : 217445 113 : pCysIleGlnArgIleGluLeuAspTrpLysAsnIleSerHisAspAspAspLysLys : 131 :|||:!:::!|||||||||! !||||||!:!|||:!!!!! !!!: ! |||!:!:!! uCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArgGlu 217446 : GTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAG : 217502 132 : IleMetValGluLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysThrPhePheM : 151 |||:!!! !!!.|||!!.|||||||||:!!|||:!! !|||||||||||||||| AlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheM 217503 : GCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCA : 217562 152 : etTyrSerGlyPheAlaPheTyrTyrIleValLeuProIleSerValGlyLysIleGl : 170 ||||||||||||||...||||||||||||!.!:!!|||||||||||||||!:!|||! etTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIleLe 217563 : TGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCT : 217619 171 : nAlaAlaAspAlaAsnLeuThrPheMetProLeuValPheProPheSerLysLeuIle : 189 !:!!! !:!!!.!||||||||||||!!:||||||||||||||||||!!!|||! !||| uSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyrIle 217620 : ATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATC : 217676 190 : IleAspThrArgTyrSerProThrAsnGluIleValPhePheLeuGlnLeuIleGlyG : 209 |||||||||||||||!!!||||||||||||||||||||||||||||||||||||!.!| IleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaG 217677 : ATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTG : 217736 210 : lyAlaValMetHisGlyValThrSerAlaAlaCysGlyLeuAlaAlaMetLeuAlaVa : 228 |||||:!!|||||||||:!!|||||||||||||||.!!||||||||| !!!||||| lyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaVa 217737 : GAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGT : 217793 229 : lHisAlaCysGlyGlnMetGluValLeuMetAsnTrpLeuLysHisLeuValAspGly : 247 ||||||||||||||||!!:|||||||||||||||||||||:!!||||||:!!|||||| lHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGly 217794 : TCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGT : 217850 248 : ArgSerAspMetGlyAspThrValAspAlaArgIleAlaSerValValSerGlnHisV : 267 |||:!!||||||.!!||||||||||||!.!||||||||||||:!!||||||||||||| ArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnHisV 217851 : AGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACG : 217910 268 : alArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheLeuGluLe : 275 |||||||||||{||} 1229 bp {|}|||||| !|| alArgIleLeu{Ly}++ ++{s}PheLeuThrLe 217911 : TTCGGATATTA{AA}gt.........................ag{a}tttttgaCGCT : 219163 276 : uThrGluLysIleLeuArgHisIleSerLeuValGluPheLeuGlyCysThrLeuAsn : 294 |||||||!:!! !|||!:!!!.||||||!!!!.!||||||||||||||||||:!!:!! uThrGluArgThrLeuGlnGlnIleSerPheAlaGluPheLeuGlyCysThrMetAsp 219164 : CACAGAGAGAACCCTCCAGCAAATCTCTTTCGCTGAATTTCTAGGATGCACCATGGAC : 219220 295 : LeuCysLeuLeuSerTyrTyrValLeuMet >>>> Target Intron 2 >>>> : 305 :!!||||||:!!.!!||||||:!!:!!:!! 76 bp IleCysLeuValGlyTyrTyrIleIleVal++ + 219221 : ATATGTCTCGTTGGATATTACATTATCGTGgt.........................a : 219327 306 : GluTrpGlyThrAsnAspIleMetSerSerAlaThrTyrAlaValLeuLeuMetSer : 323 |||||| !:!!||||||:!!! !|||:!!!.!|||||| !:!!||||||!!:||| +GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSer 219328 : gGAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCC : 219383 324 : LeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlu >> : 342 |||||||||||||||||||||||||||||||||||||||:!!|||||||||:!: LeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln++ 219384 : CTcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAggt.. : 219442 343 : >> Target Intron 3 >>>> CysArgLysIleGlyGluMetSerTyrMetIle : 352 73 bp ||||||||||||||||||||||||||||||||| ++CysArgLysIleGlyGluMetSerTyrMetIle 219443 : .......................agTGtaggaaaattggagaaatgtCGTACATGATC : 219543 353 : AspTrpTyrArgLeuProGlyLysArgLysLeuSerValIleLeuMetIleGluMetS : 372 !!:|||||||||||| !!||||||!:!||||||!!! !:!!|||! |||! |||| GluTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaMetS 219544 : GAATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTATGT : 219603 373 : erAsnSerSerIleLysLeuThrAlaGlyAsnIleValIleLeuSerTyrSerLysPh : 391 ||||||||||||||||||||||||||||||||!!:||| !|||||| !|||! || erAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPh 219604 : CGAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCACTTT : 219660 392 : eGlyAsp >>>> Target Intron 4 >>>> ValValLysThrAlaValAlaP : 401 | !||| 87 bp ||||||||||||||||||.!!| eThrAsp++ ++ValValLysThrAlaValThrP 219661 : TACCGACgt.........................agGTCGTTAAGACTGCAGTCACGT : 219777 402 : heLeuAsnValLeuArgThrValThr : 409 ||||||||||||||||||||:!!||| heLeuAsnValLeuArgThrLeuThr 219778 : TTCTGAATGTACTACGAACATTGACT : 219803 vulgar: gi|383850681|ref|XP_003700913.1| 15 409 . KQ414889.1 217156 219803 + 1390 M 255 765 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 37 111 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 83 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217157 219803 1390 + . gene_id 1 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217157 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217157 217923 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219668 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219668 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219669 219670 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219669 219755 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 219754 219755 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219756 219803 . + . KQ414889.1 exonerate:protein2genome:local exon 219756 219803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217157 219803 1390 + . alignment_id 1 ; Query gi|383850681|ref|XP_003700913.1| ; Align 217157 16 765 ; Align 219154 272 99 ; Align 219329 305 111 ; Align 219513 342 156 ; Align 219756 394 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1190 Query range: 15 -> 407 Target range: 212854 -> 215130 16 : TyrGluArgAsnValLysLeuSerIleGlnLeuCysHisTrpIleLeuLysProLeuG : 35 ||||||!:!...|||...||||||||| !! ! !!.!|||:!!||||||||| !| TyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrG 212855 : TACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGG : 212912 36 : lyValTrpProArgSerThrAsnLeuThrValAlaGlnIleTrpLeuTyrGlnLeuIl : 54 ||:!!|||||| !!.!:!! !!:!!:!! ! !:!!! ! :!! !!:!|||:! lyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIleAlaArgLeuVa 212913 : GTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGT : 212969 55 : eAsnValLeuCysTyrAlaPheIleSerPheLeuLeuValProCysSerLeuTyrVal : 73 !|||..!:!!||||||!.!!!.|||.!!!:!|||:!!:!!|||||||||||||||||| lAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrVal 212970 : CAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTG : 213026 74 : IleLeuGluValGluAspValTyrAsnGlnIleLysPhePheGlyProSerSerPheC : 93 .!!|||!!:||||||:::::::::...:::|||:!!!!.|||||| !! !:!!|||| PheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheC 213027 : TTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTT : 213086 94 : ysMetMetAlaIleMetLysTyrTyrLeuMetIleLeuHisGluAsnAspIleArgAs : 112 ||:!! |||:!: !||||||:!!! !:!!|||||||||! :!!||||||||| ysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgTh 213087 : GCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTAC : 213143 113 : pCysIleGlnArgIleGluLeuAspTrpLysAsnIleSerHisAspAspAspLysLys : 131 |||:!!:!!!.!!!::!!! !|||||||||||||||!!!|||!!:!!:||||||:!! rCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGlu 213144 : GTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAA : 213200 132 : IleMetValGluLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysThrPhePheM : 151 ||||||!.! !!!.|||!..||||||!:!::!:!!:!:.!!:!!|||.!!||||||| IleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPhePheM 213201 : ATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCA : 213260 152 : etTyrSerGlyPheAlaPheTyrTyrIleValLeuProIleSerValGlyLysIleGl : 170 |||||!!!||||||.!!||||||!:!:!!|||:!!|||||||||!.!! !|||!!: etTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLysMetVa 213261 : TGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGT : 213317 171 : nAlaAlaAspAlaAsnLeuThrPheMetProLeuValPheProPheSerLysLeuIle : 189 !|||! !||| !|||:!!||||||! ! !:!!||| !!||| !!|||!:!!!!||| lAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSerArgPheIle 213318 : AGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATC : 213374 190 : IleAspThrArgTyrSerProThrAsnGluIleValPhePheLeuGlnLeuIleGlyG : 209 :!!|||..!||||||||||||..!||||||||| !!|||!!.:!!|||:!!|||!.!| ValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleIleAlaG 213375 : GTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTG : 213434 210 : lyAlaValMetHisGlyValThrSerAlaAlaCysGlyLeuAlaAlaMetLeuAlaVa : 228 ||!.!:!!!!:|||!.!:!!.!! !!.!||||||.!!|||||||||:!!!!!||||| lyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPheAlaVa 213435 : GAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGT : 213491 229 : lHisAlaCysGlyGlnMetGluValLeuMetAsnTrpLeuLysHisLeuValAspGly : 247 |||||||||||||||||||! :!!||||||!:!||||||:!!||||||:!!|||||| lHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGly 213492 : TCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGT : 213548 248 : ArgSerAspMetGlyAspThrValAspAlaArgIleAlaSerValValSerGlnHisV : 267 |||..!||||||.!! ! !.!||||||! !||||||||| !:!!|||!:!||||||| ArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleValAsnGlnHisV 213549 : AGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATG : 213608 268 : alArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheLeuGluLe : 275 |||||||||||{||} 840 bp {|}||||||||||| alArgIleLeu{Ly}++ ++{s}PheLeuGluLe 213609 : TGCGGATACTG{AA}gt.........................ag{A}TTCTTAGAGCT : 214472 276 : uThrGluLysIleLeuArgHisIleSerLeuValGluPheLeuGlyCysThrLeuAsn : 294 |..!|||||| !||||||!!.:!!|||!!!!.!|||!!.|||! !||||||:!!||| uValGluLysAlaLeuArgGlnValSerPheAlaGluLeuLeuValCysThrValAsn 214473 : CGTGGAGAAAGCACTTCGGCAAGTATCTTTCGCTGAATTATTAGTATGCACGGTGAAT : 214529 295 : LeuCysLeuLeuSerTyrTyrValLeuMet >>>> Target Intron 2 >>>> : 305 |||||||||:!!.!!||||||:!!:!!! ! 68 bp LeuCysLeuValGlyTyrTyrIleIleThr++ + 214530 : CTCTGTCTCGTTGGATATTACATAATAACGgt.........................a : 214628 306 : GluTrpGlyThrAsnAspIleMetSerSerAlaThrTyrAlaValLeuLeuMetSer : 323 ||||||..!:!!|||:!!:!!! !!!!!!!.!||||||!.!||||||! !!!:||| +GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValValLeuTyrIleSer 214629 : ggAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGGTGTTGTATATCTCT : 214684 324 : LeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlu >> : 342 |||||||||||||||||||||||||||||||||||||||||||||:!!|||:!! LeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValSerGluGln++ 214685 : CtcactttcaatattttcatattttgttaCATAGGCGAGCTTGTGTCTGAACAGgt.. : 214743 343 : >> Target Intron 3 >>>> CysArgLysIleGlyGluMetSerTyrMetIle : 352 123 bp |||!:!|||:!!||||||:!:|||||||||||| ++CysLysLysValGlyGluValSerTyrMetIle 214744 : .......................agTGCAAAAAGGTCGGAGAAGTATCGTACATGATC : 214894 353 : AspTrpTyrArgLeuProGlyLysArgLysLeuSerValIleLeuMetIleGluMetS : 372 !!:||||||||||||||||||!!.!:!||||||!!! !||||||!!:!!:! !|||| GluTrpTyrArgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetS 214895 : GAATGGTACCGATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGT : 214954 373 : erAsnSerSerIleLysLeuThrAlaGlyAsnIleValIleLeuSerTyrSerLysPh : 391 |||||||||||:!!|||!!!||||||||||||!!:||| !|||||| !|||! || erAsnSerSerValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPh 214955 : CCAATTCATCCGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTT : 215011 392 : eGlyAsp >>>> Target Intron 4 >>>> ValValLysThrAlaValAlaP : 401 |.!!..! 69 bp ||||||::!|||:!!||||||| eSerSer++ ++ValValArgThrSerValAlaP 215012 : CAGCAGTgt.........................agGTTGTTCGAACATCGGTTGCCT : 215110 402 : heLeuAsnValLeuArgThr : 407 ||||||||!.!||||||||| heLeuAsnAlaLeuArgThr 215111 : TCTTAAACGCGTTACgaaca : 215130 vulgar: gi|383850681|ref|XP_003700913.1| 15 407 . KQ414889.1 212854 215130 + 1190 M 255 765 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 M 33 99 5 0 2 I 0 64 3 0 2 M 37 111 5 0 2 I 0 119 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212855 215130 1190 + . gene_id 2 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212855 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 212855 213621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215019 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215019 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 215020 215021 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 215020 215088 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 215087 215088 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 215089 215130 . + . KQ414889.1 exonerate:protein2genome:local exon 215089 215130 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212855 215130 1190 + . alignment_id 2 ; Query gi|383850681|ref|XP_003700913.1| ; Align 212855 16 765 ; Align 214463 272 99 ; Align 214630 305 111 ; Align 214864 342 156 ; Align 215089 394 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1146 Query range: 13 -> 409 Target range: 226906 -> 230518 14 : AspGlyTyrGluArgAsnValLysLeuSerIleGlnLeuCysHisTrpIleLeuLysP : 33 :!!! !|||:!!..! !!:!!!!.||||||||||||||| !!.!|||:!:||||||| AsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysP 226907 : AACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAAC : 226964 34 : roLeuGlyValTrpProArgSerThrAsnLeuThrValAlaGlnIleTrpLeuTyrGl : 52 ||||||||:!!|||||| !||| !!!. !:!! ! ! !! !!! !!!! ! roLeuGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTr 226965 : CACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTG : 227021 53 : nLeuIleAsnValLeuCysTyrAlaPheIleSerPheLeuLeuValProCysSerLeu : 71 !|||!!:..! !!||||||||||||.!.!!:|||||| !|||||| !! !!.!!||| pLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeu 227022 : GTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTG : 227078 72 : TyrValIleLeuGluValGluAspValTyrAsnGlnIleLysPhePheGlyProSerS : 91 ||||||:!!|||||||||:!!! !!.!|||||| !:!:|||.!..!!||||||! !| TyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetS 227079 : TACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGT : 227138 92 : erPheCysMetMetAlaIleMetLysTyrTyrLeuMetIleLeuHisGluAsnAspIl : 110 |||||! ! !|||:!!:!!:!:||||||! !:!!:!!! !!!||||||:!!||||| erPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIl 227139 : CCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACAT : 227195 111 : eArgAspCysIleGlnArgIleGluLeuAspTrpLysAsnIleSerHisAspAspAsp : 129 |! !!!:|||:!!:!!||||||:!!! !|||||||||||||||!!!:!! !!:||| eLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAsp 227196 : TCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGAC : 227252 130 : LysLysIleMetValGluLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysThrP : 149 !:!!!.:!:|||||| ! ! ||| ! !:!||||||:!!||||||.!!:!!||||||| ArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrP 227253 : AGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGT : 227312 150 : hePheMetTyrSerGlyPheAlaPheTyrTyrIleValLeuProIleSerValGlyLy : 168 |||||:!:!:!|||...|||...|||:::|||||||||:!!||||||!:!!.!|||!. hePheValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySe 227313 : TTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAG : 227369 169 : sIleGlnAlaAlaAspAlaAsnLeuThrPheMetProLeuValPheProPheSerLys : 187 .:!! !.!!! !|||!.!|||! !!:!!:!!!:! !:!! !||||||||| !!||| rValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLys 227370 : TGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAA : 227426 188 : LeuIleIleAspThrArgTyrSerProThrAsnGluIleValPhePheLeuGlnLeuI : 207 :!!||| !|||..!|||||||||||| !||||||||| !!|||! :!!|||!!!: IleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheV 227427 : ATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTG : 227486 208 : leGlyGlyAlaValMetHisGlyValThrSerAlaAlaCysGlyLeuAlaAlaMetLe : 226 !! !||| !|||:!!||||||||||||||||||||||||.!!:!!||||||:!!|| alThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLe 227487 : TAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCT : 227543 227 : uAlaValHisAlaCysGlyGlnMetGluValLeuMetAsnTrpLeuLysHisLeuVal : 245 ||||||||||||||||||||||||||||||||||:!!::!|||||| !||||||:!! uAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIle 227544 : TGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATC : 227600 246 : AspGlyArgSerAspMetGlyAspThrValAspAlaArgIleAlaSerValValSerG : 265 |||||||||:!!||||||.!! ! |||:!!|||! !||||||||||||:!!|||!!!! AspGlyArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValThrH 227601 : GACGGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTC : 227660 266 : lnHisValArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheLe : 273 !.|||||||||||||||{!!} 396 bp {.}||||| isHisValArgIleLeu{As}++ ++{n}PheLe 227661 : ACCACGTTCGAATATTG{AA}gt.........................ag{C}TTTCT : 228080 274 : uGluLeuThrGluLysIleLeuArgHisIleSerLeuValGluPheLeuGlyCysThr : 292 |! |||! !||||||! !:!!!:!!!.|||:!!!!!||||||||||||||||||||| uAlaLeuIleGluLysThrMetGlnGlnIleAlaPheValGluPheLeuGlyCysThr 228081 : GGCCCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGTACA : 228137 293 : LeuAsnLeuCysLeuLeuSerTyrTyrValLeuMet >>>> Target Intron 2 : 305 :!!! !|||||||||:!!..!||||||:!!:!!! ! 72 bp IleIleLeuCysLeuIleGluTyrTyrIleIleThr++ 228138 : ATAATTCTGTGCCTCATCGAGTATTACATCATAACGgt.................... : 228178 306 : >>>> GluTrpGlyThrAsnAspIleMetSerSerAlaThrTyrAlaValLeuLeu : 321 ||||||..! !!!!.!!::!!! ! !:!!!.!||||||:!!!.!|||||| ++GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeu 228179 : .....agGAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTT : 228296 322 : MetSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluG : 341 :!:|||!!!||||||||||||||||||||||||||||||||||||:!!|||||||||. LeuSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluH 228297 : TTATCCTTTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAAC : 228356 342 : lu >>>> Target Intron 3 >>>> CysArgLysIleGlyGluMetSerTyr : 350 !. 1889 bp |||||||||:!!||||||! !|||||| is++ ++CysArgLysValGlyGluLysSerTyr 228357 : ACgt.........................agTGCAGAAAAGTCGGCGAAAAGTCGTAC : 230272 351 : MetIleAspTrpTyrArgLeuProGlyLysArgLysLeuSerValIleLeuMetIleG : 370 ||||||!!:|||||||||||| !!|||!!.!:!||||||!!! !||||||!!:|||! MetIleGluTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleA 230273 : ATGATCGAATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCG : 230332 371 : luMetSerAsnSerSerIleLysLeuThrAlaGlyAsnIleValIleLeuSerTyrSe : 389 |||||||||!!!|||! |||!!!||||||||||||!!:||| !|||||| !: laMetSerAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAs 230333 : CCATGTCCAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAA : 230389 390 : rLysPheGlyAsp >>>> Target Intron 4 >>>> ValValLysThrAlaV : 399 !! |||.!!||| 67 bp ||||||||||||:!!: nThrPheSerAsp++ ++ValValLysThrSerM 230390 : CACTTTCAGCGACgt.........................agGTCGTTAAAACGTCCA : 230486 400 : alAlaPheLeuAsnValLeuArgThrValThr : 409 !!!.!|||||||||:!!|||||||||:!!||| etGlyPheLeuAsnMetLeuArgThrLeuThr 230487 : TGGGTTTCTTAAACATGCTACGAACACTGACG : 230518 vulgar: gi|383850681|ref|XP_003700913.1| 13 409 . KQ414889.1 226906 230518 + 1146 M 257 771 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226907 230518 1146 + . gene_id 3 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226907 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226907 227679 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230403 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230403 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 230404 230405 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 230404 230470 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 230469 230470 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230471 230518 . + . KQ414889.1 exonerate:protein2genome:local exon 230471 230518 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226907 230518 1146 + . alignment_id 3 ; Query gi|383850681|ref|XP_003700913.1| ; Align 226907 14 771 ; Align 228077 272 99 ; Align 228248 305 111 ; Align 230248 342 156 ; Align 230471 394 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1084 Query range: 14 -> 409 Target range: 208191 -> 212081 15 : GlyTyrGluArgAsnValLysLeuSerIleGlnLeuCysHisTrpIleLeuLysProL : 34 ..!|||:!!!.!:!!:!!!..!!!!:!:!!!::||| ! |||! |||||| !: AsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuLysIleI 208192 : AACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGAAGATAA : 208249 35 : euGlyValTrpProArgSerThrAsnLeuThrValAlaGlnIleTrpLeuTyrGlnLe : 53 !!||| !||||||||||||! !:!!! !:!! ! !:!!! ! ! ! !:!! || leGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHisIleLe 208250 : TCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCATATTCT : 208306 54 : uIleAsnValLeuCysTyrAlaPheIleSerPheLeuLeuValProCysSerLeuTyr : 72 |:!!||||||||| !!:!!..!!!.:!!.!!|||:!!:!!:!!||| !.!!:!!!:! uLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGlyMetPhe 208307 : CTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATGTTC : 208363 73 : ValIleLeuGluValGluAspValTyrAsnGlnIleLysPhePheGlyProSerSerP : 92 !.!||||||! !||||||||| !!|||:!!|||:!!|||.!!! !.!! !! !|||| AlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaLeuSerP 208364 : GCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTCTGAGCT : 208423 93 : heCysMetMetAlaIleMetLysTyrTyrLeuMetIleLeuHisGluAsnAspIleAr : 111 ||! !|||||||||.!!! !|||||| :!!|||! !:!!!.!|||..!|||||||| hePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAspIleAr 208424 : TCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGACATACG : 208480 112 : gAspCysIleGlnArgIleGluLeuAspTrpLysAsnIleSerHisAspAspAspLys : 130 | ! |||:!!:!! !:!!||| !||||||!:!|||:!:..!|||!!:!!:|||!:! gLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGluAspArg 208481 : GAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAGGACAGG : 208537 131 : LysIleMetValGluLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysThrPheP : 150 |||||||||:!!!!:!!.|||!..|||!.!|||:!!||||||!.!:!!||| ! !| LysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysGlyAlaP 208538 : AAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCGGAGCTT : 208597 151 : heMetTyrSerGlyPheAlaPheTyrTyrIleValLeuProIleSerValGlyLysIl : 169 ||||||||.!!||| ||||||||||||!.!||||||:!!!!! !! !|||:! heMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAspLysVa 208598 : TCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGACAAGGT : 208654 170 : eGlnAlaAlaAspAlaAsnLeuThrPheMetProLeuValPheProPheSerLysLeu : 188 ! ! !! !! !!.!|||||||||!:!! !||||||!:!||| !! !!|||!!! lValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValProLysPhe 208655 : CGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCTAAGTTC : 208711 189 : IleIleAspThrArgTyrSerProThrAsnGluIleValPhePheLeuGlnLeuIleG : 208 |||:!:|||..!||||||||||||..!||||||||| !!!:! :!!||||||:!:. IleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnLeuLeuS 208712 : ATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAATTGTTGT : 208771 209 : lyGlyAlaValMetHisGlyValThrSerAlaAlaCysGlyLeuAlaAlaMetLeuAl : 227 .!||| !||| |||..!:!!||| !!.!||||||||||||||||||:!!||||| erGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLeuLeuAl 208772 : CGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCTGCTCGC : 208828 228 : aValHisAlaCysGlyGlnMetGluValLeuMetAsnTrpLeuLysHisLeuValAsp : 246 |:!!|||||||||||||||:!!:!!:!!||||||::!|||:!!:!! ! ||||||||| aMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeuValAsp 208829 : GATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTGGTCGAT : 208885 247 : GlyArgSerAspMetGlyAspThrValAspAlaArgIleAlaSerValValSerGlnH : 266 ||||||..!||| !! ! ! !.!:!!||| !|||:!:|||!:!:!!|||..!|||| GlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleValGluGlnH 208886 : GGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCGTGGAGCAGC : 208945 267 : isValArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheLeuGl : 274 ||||||||:!::!!{!!} 1536 bp {.}|||:!!! isValArgValIle{As}++ ++{n}PheIleAl 208946 : ATGTTCGAGTGATC{AA}gt.........................ag{T}TTTATAGC : 210505 275 : uLeuThrGluLysIleLeuArgHisIleSerLeuValGluPheLeuGlyCysThrLeu : 293 |||||||||!!.:!!|||!.!.!.|||||||||:!!|||.!.:!!|||||||||||| aLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGluMetValGlyCysThrLeu 210506 : TCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAATGGTGGGGTGCACTCTG : 210562 294 : AsnLeuCysLeuLeuSerTyrTyrValLeuMet >>>> Target Intron 2 >> : 305 |||:!!|||!!!|||.!!||||||..!:!!!!: 66 bp AsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210563 : AACATGTGTTTCCTTGGCTATTACACGATGATTgt....................... : 210600 306 : >> GluTrpGlyThrAsnAspIleMetSerSerAlaThrTyrAlaValLeuLeuMet : 322 ||||||! !:!!!!.||| !!!:|||||| !|||||| !|||||||||! ++GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValLeuLeuThr 210601 : ..agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTACTCCTCACT : 210715 323 : SerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlu : 342 |||:!!||||||||||||||||||||||||||||||||||||:!!:!!||||||:!: SerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAlaGluGln+ 210716 : TCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGCTGAACAgg : 210775 343 : >>>> Target Intron 3 >>>> CysArgLysIleGlyGluMetSerTyrMet : 351 999 bp !|||:!!||||||! !||||||||| + ++ThrValLysValGlyGluLysSerTyrMet 210776 : t.........................agACAGTAAAAGTTGGAGAAAAGTCTTACATG : 211801 352 : IleAspTrpTyrArgLeuProGlyLysArgLysLeuSerValIleLeuMetIleGluM : 371 |||||||||||||||:!!|||||||||!:! ||| !||| !|||||||||...| IleAspTrpTyrArgMetProGlyLysLysGlyLeuValValProLeuMetIleSerM 211802 : ATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGATGATCTCCA : 211861 372 : etSerAsnSerSerIleLysLeuThrAlaGlyAsnIleValIleLeuSerTyrSerLy : 390 |||||:!!|||!!!! !|||:!!||||||||||||:!!:!!:!!|||||| !|||!. etSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleValLeuSerIleSerSe 211862 : TGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTTCTTTCAATCAGTAG : 211918 391 : sPheGlyAsp >>>> Target Intron 4 >>>> ValValLysThrAlaValA : 400 .||||||||| 104 bp |||:!!||||||:!!|||. rPheGlyAsp++ ++ValIleLysThrSerValT 211919 : TTTCGGTGACgt.........................agGTTATCAAGACTTCGGTAA : 212052 401 : laPheLeuAsnValLeuArgThrValThr : 409 !!!:!||||||:!!||||||||| !!||| hrTyrLeuAsnMetLeuArgThrPheThr 212053 : CATACTTGAACATGCTACGAACATTCACA : 212081 vulgar: gi|383850681|ref|XP_003700913.1| 14 409 . KQ414889.1 208191 212081 + 1084 M 256 768 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 995 3 0 2 M 52 156 5 0 2 I 0 100 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208192 212081 1084 + . gene_id 4 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208192 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208192 208961 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211929 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 211930 211931 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 211930 212033 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 212032 212033 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 212034 212081 . + . KQ414889.1 exonerate:protein2genome:local exon 212034 212081 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208192 212081 1084 + . alignment_id 4 ; Query gi|383850681|ref|XP_003700913.1| ; Align 208192 15 768 ; Align 210499 272 99 ; Align 210664 305 111 ; Align 211774 342 156 ; Align 212034 394 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 987 Query range: 15 -> 273 Target range: 221360 -> 222134 16 : TyrGluArgAsnValLysLeuSerIleGlnLeuCysHisTrpIleLeuLysProLeuG : 35 |||:!!! !|||||||||||||||:!:|||||| !!!.!|||||||||||||||:!!| TyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleG 221361 : TACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCG : 221418 36 : lyValTrpProArgSerThrAsnLeuThrValAlaGlnIleTrpLeuTyrGlnLeuIl : 54 |||||||||||!.!|||.!!|||:!!:!!..!!.!:!!! !!::|||||| !||||| lyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLeuIl 221419 : GTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCTGAT : 221475 55 : eAsnValLeuCysTyrAlaPheIleSerPheLeuLeuValProCysSerLeuTyrVal : 73 |||||||:!!||||||::!.!.|||!!!|||||||||||||||||||||||||||||| eAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyrVal 221476 : AAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTG : 221532 74 : IleLeuGluValGluAspValTyrAsnGlnIleLysPhePheGlyProSerSerPheC : 93 |||||||||||||||||||||||||||::!||||||!!.!!.||||||! !||||||| IleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheC 221533 : ATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCT : 221592 94 : ysMetMetAlaIleMetLysTyrTyrLeuMetIleLeuHisGluAsnAspIleArgAs : 112 ||:!!||||||.!!:!:||||||:!!|||:!!||||||:!!|||||||||||||||!! ysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGl 221593 : GCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGA : 221649 113 : pCysIleGlnArgIleGluLeuAspTrpLysAsnIleSerHisAspAspAspLysLys : 131 :||||||:!!|||||||||! !|||||||||||||||!!!:!!..! ! |||||| ! uCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLysAsp 221650 : GTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAGGAT : 221706 132 : IleMetValGluLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysThrPhePheM : 151 ||||||:!!|||!!.|||! |||||||||!:!|||||| !:!!||||||||||||| IleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheM 221707 : ATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCA : 221766 152 : etTyrSerGlyPheAlaPheTyrTyrIleValLeuProIleSerValGlyLysIleGl : 170 ||||||||||||||...||||||||||||!.!:!!|||.!!|||||||||||||||! etTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIlePr 221767 : TGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCC : 221823 171 : nAlaAlaAspAlaAsnLeuThrPheMetProLeuValPheProPheSerLysLeuIle : 189 ||| !|||...|||:::||||||:::|||:!!|||||||||||||||!:!!!!||| oAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPheIle 221824 : TGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATC : 221880 190 : IleAspThrArgTyrSerProThrAsnGluIleValPhePheLeuGlnLeuIleGlyG : 209 :!!||||||||||||||||||..!|||||||||:!!|||! ||||||:!!!!:!.!| ValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaG 221881 : GTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGG : 221940 210 : lyAlaValMetHisGlyValThrSerAlaAlaCysGlyLeuAlaAlaMetLeuAlaVa : 228 |||||:!!||||||.!!:!!|||||||||||||||.!!|||!.!||||||!!!||||| lyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaVa 221941 : GTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGT : 221997 229 : lHisAlaCysGlyGlnMetGluValLeuMetAsnTrpLeuLysHisLeuValAspGly : 247 |||||||||||||||||||:!!|||||||||!:!|||||||||||||||:!!:!!||| lHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsnGly 221998 : GCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGC : 222054 248 : ArgSerAspMetGlyAspThrValAspAlaArgIleAlaSerValValSerGlnHisV : 267 |||:!!|||||| !!:!!!.!|||||| !|||||||||!.!:!!|||!:!||||||| ArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnHisV 222055 : CGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAACACG : 222114 268 : alArgIleLeuLysPheLeu : 273 |||||||||||:!!!:!:!! alArgIleLeuGlnTyrVal 222115 : TTCGAATATTGCAGTATGTA : 222134 vulgar: gi|383850681|ref|XP_003700913.1| 15 273 . KQ414889.1 221360 222134 + 987 M 258 774 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221361 222134 987 + . gene_id 5 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221361 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221361 222134 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221361 222134 987 + . alignment_id 5 ; Query gi|383850681|ref|XP_003700913.1| ; Align 221361 16 774 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 708 Query range: 22 -> 394 Target range: 284526 -> 287222 23 : SerIleGlnLeuCysHisTrpIleLeuLysProLeuGlyValTrpProArgSerThrA : 42 |||:!!|||:!! !!.!|||.!!|||||||||:!!||||||||||||! !||| ! SerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuC 284527 : AGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCT : 284584 43 : snLeuThrValAlaGlnIleTrpLeuTyrGlnLeuIleAsnValLeuCysTyrAlaPh : 61 !:!!|||..! !:!!! !! ! !:!!:!! :!!:!! !!! ! !.! ysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLe 284585 : GCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCT : 284641 62 : eIleSerPheLeuLeuValProCysSerLeuTyrValIleLeuGlu<->ValGluAsp : 79 .|||.!!||||||||||||||||||:!!|||! !..!:!:|||!!: ..!! ||| uIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAsp 284642 : GATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGAT : 284698 80 : ValTyrAsnGlnIleLysPhePheGlyProSerSerPheCysMetMetAlaIleMetL : 99 :!! !!!..:!!||||||.!..!!|||||| !|||||||||||||||||| !!:| LeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleL 284699 : CTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCA : 284758 100 : ysTyrTyrLeuMetIleLeuHisGluAsnAspIleArgAspCysIleGlnArgIleGl : 118 ||||||||:!!:!:|||! !!.!! ..! ! ||| !!.!.|||:!::!! !|||.. ysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIleAr 284759 : AGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCG : 284815 119 : uLeuAspTrpLys<->AsnIleSerHis<-><->AspAspAspLysLysIleMetVal : 134 . !||||||... !..:!!|||||| :::::::::::::::|||||| ! gAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMetArg 284816 : TGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTGAGG : 284872 135 : GluLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysThrPhePheMetTyrSerG : 154 !!:!..|||!:!.!!||||||...||| !!!!|||.!! !||||||||||||| AspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerG 284873 : GACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCG : 284932 155 : lyPheAlaPheTyrTyrIleValLeuProIleSerValGlyLysIleGlnAlaAlaAs : 173 || !|||||| !! |||:!!|||:!:!!!..!! !:::! :!! ! !|| lyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIleAs 284933 : GAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGA : 284989 174 : pAlaAsnLeuThrPheMetProLeuValPheProPheSerLysLeuIleIleAspThr : 192 | ||| !||| ! ! !!! !!.!||||||.!!! !::: !:!!:!!||| !! p---AsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 284990 : C---AACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCG : 285043 193 : ArgTyrSerProThrAsnGluIleValPhePheLeuGlnLeuIleGlyGlyAlaValM : 212 ||| !||||||:!! !||||||||| |||:!!|||! !:!:!.!!.! !|||! ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValI 285044 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTA : 285103 213 : etHisGlyValThrSerAlaAlaCysGlyLeuAlaAlaMetLeuAlaValHisAlaCy : 231 !::!!..!|||||| !!.!||||||.!!|||||||||:!!!!!!.!:!!|||!.!|| leTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCy 285104 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTG : 285160 232 : sGlyGlnMetGluValLeuMetAsnTrpLeuLysHisLeuValAspGly<->ArgSer : 249 |||||||.!...!:!!|||:!!!.. !||| ! ! |||||||||||| !:!.!! sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLysGly 285161 : TGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGG : 285217 250 : AspMetGly<->AspThrValAspAlaArgIleAlaSerValValSerGlnHisValA : 268 ! !||| ..!||| !!!: !|||:!:!.!..!:!!:!!..!!!.|||:!!! ArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuL 285218 : AGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGA : 285277 269 : rgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheLeuGluLeuTh : 276 :!||||||{ } 1411 bp { }|||:!!..!! !! ysIleLeu{Gl}++ ++{y}PheIleSerGlnIl 285278 : AGATACTG{GG}gt.........................ag{T}TTTATATCGCAAAT : 286712 277 : rGluLysIleLeuArgHisIleSerLeuValGluPheLeuGlyCysThrLeuAsnLeu : 295 !||| !:!!|||!.!.!.|||!!!!!!|||||| ! :!!|||||||||||||||:!! eGluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsnIle 286713 : CGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATA : 286769 296 : CysLeuLeuSerTyrTyrValLeuMet >>>> Target Intron 2 >>>> Gl : 305 |||!!!|||.!!||||||:!!|||! ! 80 bp || CysPheLeuGlyTyrTyrLeuLeuThr++ ++Gl 286770 : TGCTTTTTGGGATATTATTTACTGACGgt.........................agGA : 286879 306 : uTrpGlyThrAsnAspIleMetSerSerAlaThrTyrAlaValLeuLeuMetSerLeu : 324 ||||! ! !!:!!!:! !!!:.!!!!! !||||||..!..!||||||:!:|||!!! uTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerPhe 286880 : ATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTC : 286936 325 : ThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlu >>>> : 342 |||||||||:!!||||||.!!|||||||||||||||:!!:!!:!!|||::: ThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286937 : ACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt..... : 286992 343 : Target Intron 3 >>>> CysArgLysIleGlyGluMetSerTyrMetIleAsp : 353 74 bp ||| !|||:!!||| ! !!!|||||||||||| ++CysLeuLysValGlyLeuSerThrTyrMetIleAsp 286993 : ....................agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGAC : 287097 354 : TrpTyrArgLeuProGlyLysArgLysLeuSerValIleLeuMetIleGluMetSerA : 373 |||||||||||||||||||||! ! ! !.!!:!!||||||!!:.!!! :!!|||| TrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerA 287098 : TGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGA : 287157 374 : snSerSerIleLysLeuThrAlaGlyAsnIleValIleLeuSerTyrSerLysPheGl : 392 ||||||||||||||||||||||||||!!.|||:!! !||||||! |||!..||| ! snSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCy 287158 : ATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTG : 287214 393 : yAspVal : 394 !..!||| sSerVal 287215 : CAGCGTG : 287222 vulgar: gi|383850681|ref|XP_003700913.1| 22 394 . KQ414889.1 284526 287222 + 708 M 54 162 G 0 3 M 46 138 G 0 3 M 4 12 G 0 6 M 47 141 G 1 0 M 73 219 G 0 3 M 5 15 G 0 3 M 18 54 S 0 2 5 0 2 I 0 1407 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284527 287222 708 + . gene_id 6 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284527 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284527 285287 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286698 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287222 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287222 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284527 287222 708 + . alignment_id 6 ; Query gi|383850681|ref|XP_003700913.1| ; Align 284527 23 162 ; Align 284692 77 138 ; Align 284833 123 12 ; Align 284851 127 141 ; Align 284992 175 219 ; Align 285214 248 15 ; Align 285232 253 54 ; Align 286700 272 99 ; Align 286879 305 111 ; Align 287064 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 692 Query range: 22 -> 394 Target range: 278579 -> 280435 23 : SerIleGlnLeuCysHisTrpIleLeuLysProLeuGlyValTrpProArgSerThrA : 42 |||:!!|||:!! !!.!|||.!!|||||||||:!!||||||||||||! !||| ! SerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuC 278580 : AGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCT : 278637 43 : snLeuThrValAlaGlnIleTrpLeuTyrGlnLeuIleAsnValLeuCysTyrAlaPh : 61 !:!!|||..! !:!!! !! ! !:!!:!! :!!:!! !!! ! !.! ysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLe 278638 : GCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCT : 278694 62 : eIleSerPheLeuLeuValProCysSerLeuTyrValIleLeuGlu<->ValGluAsp : 79 .|||.!!||||||||||||||||||:!!|||! !..!:!:|||!!: ..!! ||| uIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAsp 278695 : GATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGAT : 278751 80 : ValTyrAsnGlnIleLysPhePheGlyProSerSerPheCysMetMetAlaIleMetL : 99 :!! !!!..:!!||||||.!..!!|||||| !|||||||||! !||||||! !!:| LeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrIleL 278752 : CTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCA : 278811 100 : ysTyrTyrLeuMetIleLeuHisGluAsnAspIleArgAspCysIleGlnArgIleGl : 118 ||||||||:!!:!:!!:! !!.!! ..! ! ||| !! ! |||:!:.!. !|||.. ysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIleAr 278812 : AATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCG : 278868 119 : uLeuAspTrpLys<-><-><->AsnIleSerHisAspAspAspLysLysIleMetVal : 134 . !||||||... ::: ! ! ...:::::::::::::::|||||| ! gThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMetArg 278869 : TACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTGAGG : 278925 135 : GluLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysThrPhePheMetTyrSerG : 154 !!:!..|||!:!.!!||||||...||| !!!! !!.!! !||||||||||||| AspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerG 278926 : GACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCG : 278985 155 : lyPheAlaPheTyrTyrIleValLeuProIleSerValGlyLysIleGlnAlaAlaAs : 173 || !.!|||||| ! !|||:!!|||:!:! !!.!! !:::! :!! ! !|| lyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIleAs 278986 : GCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGA : 279042 174 : pAlaAsnLeuThrPheMetProLeuValPheProPheSerLysLeuIleIleAspThr : 192 | ||| !||| ! ! !!! !!.!||||||.!!! !::: !:!!:!!||| !! p---AsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 279043 : C---AATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCG : 279096 193 : ArgTyrSerProThrAsnGluIleValPhePheLeuGlnLeuIleGlyGlyAlaValM : 212 ||| !||||||:!! !||||||||| |||:!!|||! !:!:!.!!.! !|||: ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValL 279097 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTT : 279156 213 : etHisGlyValThrSerAlaAlaCysGlyLeuAlaAlaMetLeuAlaValHisAlaCy : 231 !::!!..!|||||| !!.!||||||.!!||| !|||:!!!!!!.!:!!|||!.!|| euTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCy 279157 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTG : 279213 232 : sGlyGlnMetGluValLeuMetAsnTrpLeuLysHisLeuValAspGlyArgSerAsp : 250 |||||||.!...!:!!|||:!!!.. !||| ! ! |||:!!|||||| !!.!! sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLysGly 279214 : TGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGG : 279270 251 : MetGly<-><->AspThrValAspAlaArgIleAlaSerValValSerGlnHisValA : 268 ! ! ! ..!||| !!!: !|||:!:!.!..!:!!:!!..!!!.|||:!!! ArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuL 279271 : AGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGA : 279330 269 : rgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheLeuGluLeuTh : 276 :!||||||{ } 571 bp { }|||:!!..!! !! ysIleLeu{Gl}++ ++{y}PheIleSerGlnIl 279331 : AGATACTG{GG}gt.........................ag{T}TTTATATCGCAAAT : 279925 277 : rGluLysIleLeuArgHisIleSerLeuValGluPheLeuGlyCysThrLeuAsnLeu : 295 !||| !:!!|||!.!.!.|||!!!!!!|||||| ! :!!|||||||||||||||:!! eGluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsnIle 279926 : CGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATA : 279982 296 : CysLeuLeuSerTyrTyrValLeuMet >>>> Target Intron 2 >>>> Gl : 305 |||!!!|||!!!||||||:!!|||! ! 80 bp || CysPheLeuThrTyrTyrLeuLeuThr++ ++Gl 279983 : TGCTTTTTGACATATTATTTACTCACGgt.........................agGA : 280092 306 : uTrpGlyThrAsnAspIleMetSerSerAlaThrTyrAlaValLeuLeuMetSerLeu : 324 ||||! ! !|||||| !!!:.!!!!! !|||||| !:!!!!!|||!!:|||||| uTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerLeu 280093 : ATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTTTA : 280149 325 : ThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlu >>>> : 342 |||||||||:!!||||||.!!|||||||||||||||:!!:!!:!!|||::: ThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 280150 : ACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt..... : 280205 343 : Target Intron 3 >>>> CysArgLysIleGlyGluMetSerTyrMetIleAsp : 353 74 bp ||| !|||:!!|||! ! !!!|||||||||||| ++CysLeuLysValGlyValSerThrTyrMetIleAsp 280206 : ....................agTGCTTAAAAGTCGGCGTGTCAACTTACATGATCGAC : 280310 354 : TrpTyrArgLeuProGlyLysArgLysLeuSerValIleLeuMetIleGluMetSerA : 373 |||||||||||||||||||||!:! !! !.!!:!!||||||!!:.!!! :!!|||| TrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaValSerA 280311 : TGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCGTGTCGA : 280370 374 : snSerSerIleLysLeuThrAlaGlyAsnIleValIleLeuSerTyrSerLysPheGl : 392 ||||||||||||||||||||||||||!!.|||:!! !||||||! |||!..||| ! snSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCy 280371 : ATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTG : 280427 393 : yAspVal : 394 !..!||| sSerVal 280428 : CAGCGTG : 280435 vulgar: gi|383850681|ref|XP_003700913.1| 22 394 . KQ414889.1 278579 280435 + 692 M 54 162 G 0 3 M 46 138 G 0 9 M 51 153 G 1 0 M 78 234 G 0 6 M 18 54 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278580 280435 692 + . gene_id 7 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278580 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278580 279340 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280435 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280435 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278580 280435 692 + . alignment_id 7 ; Query gi|383850681|ref|XP_003700913.1| ; Align 278580 23 162 ; Align 278745 77 138 ; Align 278892 123 153 ; Align 279045 175 234 ; Align 279285 253 54 ; Align 279913 272 99 ; Align 280092 305 111 ; Align 280277 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 496 Query range: 22 -> 345 Target range: 256655 -> 258387 23 : SerIleGlnLeuCysHisTrpIleLeuLysProLeuGlyValTrpProArgSerThrA : 42 |||:!!|||||| !!..|||.!!|||||||||:!!|||!.!||||||! !|||:!!: SerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerS 256656 : AGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGT : 256713 43 : snLeuThrValAlaGlnIleTrpLeuTyrGlnLeuIleAsnValLeuCysTyrAlaPh : 61 :! !|||..! !:!! ! :!!! :!!:!:|||:!!:!!||||||!.!! erThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySe 256714 : CCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTC : 256770 62 : eIleSerPheLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspVal : 80 !|||! !||| !|||:!!||||||! !|||:!!|||.!!|||!!:! !!!:..! !! rIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPhe 256771 : TATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTC : 256827 81 : TyrAsnGlnIleLysPhePheGlyProSerSerPheCysMetMetAlaIleMetLysT : 100 ||| ::::::||| |||||||||! !||| !!! !!:!!:::! ! !!.| TyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnT 256828 : TAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATT : 256887 101 : yrTyrLeuMetIleLeuHisGluAsnAspIleArgAspCysIleGlnArgIleGluLe : 119 || |||:!!:!:|||!!.! !!!.||||||||| !!|||:!!:!!!.!|||||| yrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluTh 256888 : ACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAAC : 256944 120 : uAspTrpLysAsnIleSerHisAspAspAspLysLysIleMetValGluLysAlaLys : 138 !||||||!:!! :!:!!!...!!: ! |||:!!:!!:!:|||:!!:!!!!.|||!:! rAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArg 256945 : GGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGA : 257001 139 : PheGlyArgGlnLeuIleAlaLeuCysThrPhePheMetTyrSerGlyPheAlaPheT : 158 ||||||||| ! :!! !.!!!!!|||.!! !.!!||| ! |||||| : PheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysP 257002 : TTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtt : 257061 159 : yrTyrIleValLeuProIleSerValGlyLysIleGlnAlaAlaAspAlaAsnLeuTh : 177 :::::::: !! ! !!:!:!:!..!! !! !|||!!.!.!!.!:!!! !!.. !! hePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIl 257062 : tcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGAT : 257118 178 : rPheMetProLeuValPheProPheSerLysLeuIleIleAspThrArgTyrSerPro : 196 ! ! !||| ! !! !! ! ! !||| !:!::!::!!..! ! ! |||||| eValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerPro 257119 : CGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCT : 257175 197 : ThrAsnGluIleValPhePheLeuGlnLeuIleGlyGlyAlaValMetHisGlyValT : 216 ||||||||||||||| !!|||:!!||| ! ..!..! !:!! ! ! ! !| ThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerT 257176 : ACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTA : 257235 217 : hrSerAlaAlaCysGlyLeuAlaAlaMetLeuAlaValHisAlaCysGlyGlnMetGl : 235 || !::! !! !.!!|||||||||:!:!!!|||..!||||||! !||||||:!! hrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuTh 257236 : CAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGAC : 257292 236 : uValLeuMetAsnTrpLeuLysHisLeuValAspGlyArgSerAspMetGlyAspThr : 254 |||||||||:::|||:!!! !.!.!!!|||:!!! ! !!!!:!! ||| rValLeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThr 257293 : TGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacg : 257349 255 : ValAsp<->AlaArgIleAlaSerValValSerGlnHisValArgIleLeu{Ly} > : 271 !!:!|||!.! !:!!|||..!!!.|||:!!|||:!:|||{!:} PheProPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Ar}++ 257350 : tttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt. : 257407 272 : >>> Target Intron 1 >>>> {s}PheLeuGluLeuThrGluLysIleLeuAr : 281 760 bp {!}! !:!! !! ! !.!. !:!:! !!: +-{g}CysValMetTyrArgAsnLeuLeuGlnGl 257408 : ........................ac{G}TGCGTTATGTACCGAAACCTGTTGCAACA : 258193 282 : gHisIleSerLeuValGluPheLeuGlyCysThrLeuAsnLeuCysLeuLeuSerTyr : 300 !:!! !! ! ! ! !:! !..!! ! !!:!!:!! ::: ::: nAsnGly***AsnArgThrTyrAsnAsnPheProIleHisSerTyrSerValIlePhe 258194 : AAATGGTTAAAATCGTACCTACAATAATTTTCCTATACACAGctattctgttattttt : 258250 301 : TyrValLeuMetGluTrpGlyThrAsnAspIleMetSerSerAlaThrTyrAlaValL : 320 ||| ......||||||..!|||...||||||...::: ::::::||| !:!!: TyrTyrPheGlnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheMetI 258251 : tattattttcaggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTATGA : 258310 321 : euLeuMetSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAl : 339 !!|||!!:||||||:::||||||||||||:::...|||||||||||||||:!!:!!.! leLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLeuTh 258311 : TACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATTAAC : 258367 340 : aGluGluCysArgLysIle : 345 !|||:!! ! :::||| rGluGlnValProGluIle 258368 : AGAACAGGTACCagagatt : 258387 vulgar: gi|383850681|ref|XP_003700913.1| 22 345 . KQ414889.1 256655 258387 + 496 M 234 702 G 0 3 M 14 42 S 0 2 5 0 2 I 0 756 3 0 2 S 1 1 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256656 258387 496 + . gene_id 8 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256656 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256656 257404 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 258164 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258163 258164 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 258165 258387 . + . KQ414889.1 exonerate:protein2genome:local exon 258165 258387 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256656 258387 496 + . alignment_id 8 ; Query gi|383850681|ref|XP_003700913.1| ; Align 256656 23 702 ; Align 257361 257 42 ; Align 258166 272 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 471 Query range: 22 -> 345 Target range: 259775 -> 261856 23 : SerIleGlnLeuCysHisTrpIleLeuLysProLeuGlyValTrpProArgSerThrA : 42 |||:!!|||!!! !!..|||.!!|||||||||:!!|||!.!||||||! !|||:!!: SerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerS 259776 : AGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCT : 259833 43 : snLeuThrValAlaGlnIleTrpLeuTyrGlnLeuIleAsnValLeuCysTyrAlaPh : 61 :! !||| ! !:!!! :!!! ! :!!:!:! ! !!:!!||||||::! erThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerTh 259834 : CCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTAC : 259890 62 : eIleSerPheLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspVal : 80 !||| ! !! !|||:!!|||||| !|||:!!:!!:!!|||||| !|||..!:!! rIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeu 259891 : CATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTG : 259947 81 : TyrAsnGlnIleLysPhePheGlyProSerSerPheCysMetMetAlaIleMetLysT : 100 |||! :!!! ||| ! .!!|||||| !!!! !!! .!.:!:!.! !!!:!!.| TyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnT 259948 : TACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATT : 260007 101 : yrTyrLeuMetIleLeuHisGluAsnAspIleArgAspCysIleGlnArgIleGluLe : 119 || !:!!:!:|||...! !..||||||! !..!|||:!::!!!.!:!:||| yrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAs 260008 : ACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAA : 260064 120 : uAspTrpLysAsnIleSerHisAspAspAspLysLysIleMetValGluLysAlaLys : 138 !||||||!:!! !|||!!!...!!: ! |||:!!!!.:!:|||:!!..! ! |||||| nAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLys 260065 : CGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAA : 260121 139 : PheGlyArgGlnLeuIleAlaLeuCysThrPhePheMetTyrSerGlyPheAlaPheT : 158 ||||||||| ! :!! !|||! !|||.!! !|||:!! ! .!!||| !! !! !! PheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysP 260122 : TTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCT : 260181 159 : yrTyrIleValLeuProIleSerValGlyLysIleGlnAlaAlaAspAlaAsnLeuTh : 177 :!! !:!:||| ! !:!:|||..!! ! !||||||!.!!.!:!!! !!.. !! heCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIl 260182 : TCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGAT : 260238 178 : rPheMetProLeuValPheProPheSerLysLeuIleIleAspThrArgTyrSerPro : 196 ! !! ! !||| !! ! !! ! ! !||| !:!:|||:!!..!!.! !!|||||| eValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerPro 260239 : CGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCT : 260295 197 : ThrAsnGluIleValPhePheLeuGlnLeuIleGlyGlyAlaValMetHisGlyValT : 216 ! !||||||||||||.!! !!:!!|||!!!:!!..!||| !:!!:!!:!!..! !| MetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerT 260296 : ATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCA : 260355 217 : hrSerAlaAlaCysGlyLeuAlaAlaMetLeuAlaValHisAlaCysGlyGlnMetGl : 235 || !!.! !! !.!!|||||||||:!:|||.!!!.!|||||||||||||||:!!.! hrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAs 260356 : CCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAA : 260412 236 : uValLeuMetAsnTrpLeuLysHisLeuValAsp<->GlyArgSerAspMetGlyAsp : 253 .|||||||||.!.|||:!!! !.!.!!!|||||| ..!|||!:! ! ! ! ! nValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLys 260413 : CGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAG : 260469 254 : ThrValAspAlaArgIleAlaSerValValSerGlnHisValArgIleLeuLysPheL : 273 .!! ! ! !..!|||!.! !:!!|||..!!!.|||:!!||| !|||! !! AlaProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeuThr***A 260470 : GCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTCACGTAAG : 260529 274 : euGluLeuThrGluLysIleLeuArgHisIleSerLeuValGluPheLeuGlyCysTh : 292 ! !!!! ! ! .!!:!!||| ! ! ! !!!!:!! :!!|||! !|| spLeuPheAspIleThrPheValArg***ArgIlePheIleIleThrValGlySerTh 260530 : ATTTGTTTGATATTACTTTTGTACGATAAAGGATTTTTATAATTACGGTAGGATCTac : 260586 293 : rLeuAsnLeuCysLeu{Le} >>>> Target Intron 1 >>>> {u}SerTyr : 300 |::: |||{:!} 1109 bp {!} ::: rIleIle***LysLeu{Il}++ -+{e}TyrPhe 260587 : tataatttgaaaatta{at}gt.........................tg{a}tatttc : 261719 301 : TyrValLeuMetGluTrpGlyThrAsnAspIleMetSerSerAlaThrTyrAlaValL : 320 ::::::|||...||||||!.! !.!.||||||...!:! !:!!|||||| !:!!: PheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheMetM 261720 : tttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCATGA : 261779 321 : euLeuMetSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAl : 339 !!|||!!::!!:!! !||||||:!!||||||.!!|||||||||||||||:!!:!!.! etLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLeuTh 261780 : TGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACTAAC : 261836 340 : aGluGluCysArgLysIle : 345 !|||:!! !:! ! :!: rGluGlnValGlnHisLeu 261837 : GGAACAGGTACAACATTTG : 261856 vulgar: gi|383850681|ref|XP_003700913.1| 22 345 . KQ414889.1 259775 261856 + 471 M 224 672 G 0 3 M 51 153 S 0 2 5 0 2 I 0 1105 3 0 2 S 1 1 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259776 261856 471 + . gene_id 9 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259776 260605 . + . KQ414889.1 exonerate:protein2genome:local exon 259776 260605 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260606 260607 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 260606 261714 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261713 261714 . + . intron_id 0 ; splice_site "tg" KQ414889.1 exonerate:protein2genome:local cds 261715 261856 . + . KQ414889.1 exonerate:protein2genome:local exon 261715 261856 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259776 261856 471 + . alignment_id 9 ; Query gi|383850681|ref|XP_003700913.1| ; Align 259776 23 672 ; Align 260451 247 153 ; Align 261716 299 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 465 Query range: 17 -> 275 Target range: 232447 -> 233221 18 : ArgAsnValLysLeuSerIleGlnLeuCysHisTrpIleLeuLysProLeuGlyValT : 37 |||:!! !:!!! !|||||||||:!! !!.!|||.!!|||! !|||:!!|||!.!| ArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaT 232448 : CGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCAT : 232505 38 : rpProArgSerThrAsnLeuThrValAlaGlnIleTrpLeuTyrGlnLeuIleAsnVa : 56 |||||||| !|||.!. !:!! !|||||| ! ||| :!!|||:!:!..:! rpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLe 232506 : GGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACT : 232562 57 : lLeuCysTyrAlaPheIleSerPheLeuLeuValProCysSerLeuTyrValIleLeu : 75 ! !|||:!!:!!.!.!!:! !! !! !:!!|||||||||! !|||!:!:!!:!:!!! uThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPhe 232563 : CACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTC : 232619 76 : GluValGluAspValTyrAsnGlnIleLysPhePheGlyProSerSerPheCysMetM : 95 |||! ! !..!:!! ! .!.::!!!:|||! !.!!||||||! !||| !! !:!!| GluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuM 232620 : GAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGA : 232679 96 : etAlaIleMetLysTyrTyrLeuMetIleLeuHisGluAsnAspIleArgAspCysIl : 114 ||!.! !:!!!!.|||! !! !:!!:!: ! ! ! !|||||||||! ! !!|||:! etGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysVa 232680 : TGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGT : 232736 115 : eGlnArgIleGluLeuAspTrpLysAsnIleSerHisAspAspAspLysLysIleMet : 133 ::!!!:!:!::!!! !||||||::!|||:!!!.! ! !! ! !!::: ! :!:||| lGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMet 232737 : GGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATG : 232793 134 : ValGluLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysThrPhePheMetTyrS : 153 :!!:!!!!.||||||.!!||||||..!:!! !..!:!!..!.!!|||! !|||:!!! LeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisT 232794 : TTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACA : 232853 154 : erGlyPheAlaPheTyrTyrIleValLeuProIleSerValGlyLysIleGlnAlaAl : 172 !!||| !!!.!! ! !! ! |||||| ! !:!! !!:!!.!!! !.!! ! !.!!. hrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGl 232854 : CCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGG : 232910 173 : aAspAlaAsnLeuThrPheMetProLeuValPheProPheSerLysLeuIleIleAsp : 191 !:!!! !!:!! !:!!.!. |||||| !! ! !!|||! !! ! !:!:!!:||| yAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAsp 232911 : GAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGAC : 232967 192 : ThrArgTyrSerProThrAsnGluIleValPhePheLeuGlnLeuIleGlyGlyAlaV : 211 ||||||!:!||||||||||||||||||:!!||| !!||||||! !:!!..!||| !: ThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheI 232968 : ACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCA : 233027 212 : alMetHisGlyValThrSerAlaAlaCysGlyLeuAlaAlaMetLeuAlaValHisAl : 230 !!:!!:!!..!|||||| !!.!||||||||||||!.!|||:!:||||||:!!||||| leValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAl 233028 : TCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGC : 233084 231 : aCysGlyGlnMetGluValLeuMetAsnTrpLeuLysHisLeuValAspGlyArgSer : 249 ||||||||||:!!.!.|||:!!|||::: ||| ! !!|||||||||!.!!:!.!! aCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGly 233085 : GTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGG : 233141 250 : AspMetGlyAspThrValAspAlaArgIleAlaSerValValSerGlnHisValArgI : 269 .!. !! ! ..!!.!.!. !!:!:!!!.!! !:!!|||..!!!.|||:!!|||! GlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgT 233142 : CAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTA : 233201 270 : leLeuLysPheLeuGluLeu : 275 !|||!:!!:!|||...:!! hrLeuArgTyrLeuSerVal 233202 : CATTAAGGTATTTGTCTGTG : 233221 vulgar: gi|383850681|ref|XP_003700913.1| 17 275 . KQ414889.1 232447 233221 + 465 M 258 774 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232448 233221 465 + . gene_id 10 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232448 233221 . + . KQ414889.1 exonerate:protein2genome:local exon 232448 233221 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232448 233221 465 + . alignment_id 10 ; Query gi|383850681|ref|XP_003700913.1| ; Align 232448 18 774 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 464 Query range: 22 -> 303 Target range: 266640 -> 267555 23 : SerIleGlnLeuCysHisTrpIleLeuLysProLeuGlyValTrpProArgSerThrA : 42 |||:!:|||||| !!..|||.!!|||||||||:!!|||!.!||||||! !! !:!! SerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerL 266641 : AGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCAC : 266698 43 : snLeuThrValAlaGlnIleTrpLeuTyrGlnLeuIleAsnValLeuCysTyrAlaPh : 61 ! !:!! ! !:!! ! :!!! ! ! !:!:! !|||:!!||||||..!! euThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSe 266699 : TCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTC : 266755 62 : eIleSerPheLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspVal : 80 !||| !||| !:!!:!!||||||! !!!!:!!:!!:!!||||||! !|||..!:!! rIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIle 266756 : CATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATC : 266812 81 : TyrAsnGlnIleLysPhePheGlyProSerSerPheCysMetMetAlaIleMetLysT : 100 !!..:!!:!:||| ! ||||||||| !||| !!! .!.:!:!.! !!!:!!.| ArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnT 266813 : CGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACT : 266872 101 : yrTyrLeuMetIleLeuHisGluAsnAspIleArgAspCysIleGlnArgIleGluLe : 119 || ! !:!!:!:|||!.!...!!.!!:||||||! !|||:!!:!!!.!!!::!! yrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnTh 266873 : ACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAAC : 266929 120 : uAspTrpLysAsnIleSerHisAspAspAspLysLysIleMetValGluLysAlaLys : 138 !||||||!:!! !:!:!!!... !!:||||||:!!:!:|||:!!:!!!!.|||!:! rAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArg 266930 : AGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGG : 266986 139 : PheGlyArgGlnLeuIleAlaLeuCysThrPhePheMetTyrSerGlyPheAlaPheT : 158 .!!|||||| ! :!! ! !!!!|||.!! |||||| ! !!!||| !! ! !| IleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyT 266987 : ATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCT : 267046 159 : yrTyrIleValLeuProIleSerValGlyLysIleGlnAlaAlaAspAlaAsnLeuTh : 177 ||! !:!::!! ! !!.!!!!!:!! !! :!::!!!.!!.!:!!! !!.! !! yrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIl 267047 : ACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGAT : 267103 178 : rPheMetProLeuValPheProPheSerLysLeuIleIleAspThrArgTyrSerPro : 196 ! ! ! !||| !! ! !! !!! !||| !!!:|||! ..! ! !|||||| eValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerPro 267104 : CGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCG : 267160 197 : ThrAsnGluIleValPhePheLeuGlnLeuIleGlyGlyAlaValMetHisGlyValT : 216 |||||||||||||||.!! !!! !|||!!!:!!..!||| !:!!:!!:!!..! !. ThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerV 267161 : ACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCG : 267220 217 : hrSerAlaAlaCysGlyLeuAlaAlaMetLeuAlaValHisAlaCysGlyGlnMetGl : 235 .! !!.!|||! !.!!|||||||||:!!!!!|||!.!|||||||||||||||:!!.. alValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSe 267221 : TCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAG : 267277 236 : uValLeuMetAsnTrpLeuLysHisLeuValAspGlyArgSerAspMetGlyAspThr : 254 .|||||||||! |||:!!|||.!.!!!|||:!! !! !!!!|||! ..! ! !.! rValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsn 267278 : CGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAAC : 267334 255 : Val<->AspAlaArgIleAlaSerValValSerGlnHisValArgIleLeu{Ly} > : 271 ||| !! !!:!|||!.! !||||||..!!!.|||:!!|||:!!|||{!.} ValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se}++ 267335 : GTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG}gt. : 267392 272 : >>> Target Intron 1 >>>> {s}PheLeuGluLeuThrGluLysIleLeuAr : 281 69 bp {.}|||:!!! !! !! !|||!..:!!:!!!! ++{r}PheIleAlaArgIleGluSerValMetSe 267393 : ........................ag{C}TTCATAGCACGTATCGAAAGTGTAATGAG : 267487 282 : gHisIleSerLeuValGluPheLeuGlyCysThrLeuAsnLeuCysLeuLeuSerTyr : 300 !.!.|||!!!!!!:!!|||!!.!!! !||||||:!!:!!:!!|||:!!||||||||| rGluIleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSerTyr 267488 : CGAAATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCTAT : 267544 301 : TyrValLeu : 303 |||:!!||| TyrIleLeu 267545 : TATATCCTT : 267555 vulgar: gi|383850681|ref|XP_003700913.1| 22 303 . KQ414889.1 266640 267555 + 464 M 233 699 G 0 3 M 15 45 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266641 267555 464 + . gene_id 11 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266641 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266641 267389 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267555 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266641 267555 464 + . alignment_id 11 ; Query gi|383850681|ref|XP_003700913.1| ; Align 266641 23 699 ; Align 267343 256 45 ; Align 267460 272 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 402 Query range: 128 -> 341 Target range: 304449 -> 305211 129 : AspLysLysIleMetValGluLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysT : 148 |||::::!!!!:|||:!!:!! ! !.!:!!.!.||||||.!.|||! !:!!|||. AspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIleCysA 304450 : GATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAATCTGCG : 304507 149 : hrPhePheMetTyrSerGlyPheAlaPheTyrTyrIleValLeuProIleSerValGl : 167 !!.!.|||||||||!!!||| !.!!.!!|||:!!! |||:!!! !.!!:!!..!|| laIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheAlaThrGl 304508 : CCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCGACCGG : 304564 168 : yLysIleGlnAlaAlaAspAlaAsnLeuThrPheMetProLeuValPheProPheSer : 186 | ! ! !.!! !!!: !|||! !|||.!!! |||||||||!:!||| !! ! y---ThrTyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProThrTyr 304565 : A---ACGTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACCTAC : 304618 187 : LysLeuIleIleAspThrArgTyrSerProThrAsnGluIleValPhePheLeuGlnL : 206 !.. !:!!.!!|||..!!:! ||||||! ! !!|||:!:|||!:!|||:!!!!.! SerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheValHisC 304619 : AGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCATT : 304678 207 : euIleGlyGlyAlaValMetHisGlyValThrSerAlaAlaCysGlyLeuAlaAlaMe : 225 !!!: !!||| !|||!!::!!..!:!!|||:!!!.!||||||||||||||||||:! ysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLe 304679 : GCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCT : 304735 226 : tLeuAlaValHisAlaCysGlyGlnMetGluValLeuMetAsnTrpLeuLysHisLeu : 244 :!!!|||..!|||||||||||||||!!:!!::!!:!!|||::! ! ||| !!||| uPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAspLeu 304736 : TTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGATCTT : 304792 245 : ValAspGlyArgSerAspMetGlyAspThrValAspAlaArgIleAlaSerValValS : 264 |||:!!.!!!:!..! ..!..! !:!!||| !|||:!! !..!:!!|||. ValAsnSerLysGlu------SerSerAspLeuAspLysArgLeuIleGluIleValG 304793 : GTCAACAGCAAAGAA------TCATCTGATTTAGATAAACGATTAATAGAAATTGTTG : 304846 265 : erGlnHisValArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}Ph : 272 .!!!.|||:!!|||||||||{!:} 70 bp {!}|| luHisHisLeuArgIleLeu{Ar}++ ++{g}Ph 304847 : AGCATCATTTGCGAATTTTA{AG}gt.........................ag{A}TT : 304940 273 : eLeuGluLeuThrGluLysIleLeuArgHisIleSerLeuValGluPheLeuGlyCys : 291 |! !! !:!!..!:!!! !:!:|||!:!.!.:!!!!!!!!:!!||||||:!!|||! ! eSerAlaIleValGlnThrValLeuGlnGluValCysPheLeuGluPheIleGlySer 304941 : CTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTTCTTGGAATTCATTGGTTCT : 304997 292 : ThrLeuAsnLeuCysLeuLeuSerTyrTyrValLeuMet >>>> Target Intro : 305 |||||| :!!|||||||||..!|||||| !:!!! ! 62 bp ThrLeuLeuIleCysLeuLeuGluTyrTyrCysIleThr++ 304998 : ACCTTACTGATATGTCTACTTGAATACTACTGTATAACGgt................. : 305041 306 : n 2 >>>> GluTrpGlyThrAsnAspIleMetSerSerAlaThrTyrAlaValLeu : 320 !!:|||! !!:!!:!:!!! !:!:||| !.!!||||||.!!|||||| ++AspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValLeu 305042 : ........agGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGTTA : 305146 321 : LeuMetSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaG : 340 |||!!:|||:!!||||||||||||||||||!!.|||||||||||||||:!!:!! !| LeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMetG 305147 : CTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTATGG : 305206 341 : luGlu : 341 ||:!! luLys 305207 : AAAAG : 305211 vulgar: gi|383850681|ref|XP_003700913.1| 128 341 . KQ414889.1 304449 305211 + 402 M 39 117 G 1 0 M 81 243 G 2 0 M 19 57 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304450 305211 402 + . gene_id 12 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 304450 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304450 304868 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 1 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304450 305211 402 + . alignment_id 12 ; Query gi|383850681|ref|XP_003700913.1| ; Align 304450 129 117 ; Align 304567 169 243 ; Align 304810 252 57 ; Align 304940 272 99 ; Align 305101 305 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 393 Query range: 22 -> 271 Target range: 262852 -> 263602 23 : SerIleGlnLeuCysHisTrpIleLeuLysProLeuGlyValTrpProArgSerThrA : 42 |||:!:|||:!! !!..|||:!:|||||||||:!!|||!.!||||||! !|||.!!: SerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerAlaS 262853 : AGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCGCCT : 262910 43 : snLeuThrValAlaGlnIleTrpLeuTyrGlnLeuIleAsnValLeuCysTyrAlaPh : 61 :::!!:!! ! !:!! ! :!!!:: |||:!!! !|||:!!||||||..!.! erIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCysLe 262911 : CGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTGTCT : 262967 62 : eIleSerPheLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspVal : 80 !||| !! ! !:!!:!!|||! !! !|||:!!:!!:!!||||||!.!|||:!! !! uIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsnPhe 262968 : CATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAATTTC : 263024 81 : TyrAsnGlnIleLysPhePheGlyProSerSerPheCysMetMetAlaIleMetLysT : 100 :!!! :!!:!::!! !!.!!|||||| !.!! !! .!.:!:!.!!!:!!:!!.| HisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleAsnT 263025 : CATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCAATT : 263084 101 : yrTyrLeuMetIleLeuHisGluAsnAspIleArgAspCysIleGlnArgIleGluLe : 119 || !! !:!!:!:||||||...!!.||||||!:!! !|||:!:|||!.!:!::!! yrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGlnGl 263085 : ACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCAGGA : 263141 120 : uAspTrpLysAsnIleSerHisAspAspAspLysLysIleMetValGluLysAlaLys : 138 !|||||| ! !:!:!!!... !!:|||:!!:::||||||:!!:!!!!.|||||| uAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAlaLys 263142 : AGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCGAAA : 263198 139 : PheGlyArgGlnLeuIleAlaLeuCysThrPhePheMetTyrSerGlyPheAlaPheT : 158 !:!|||||| ! :!! !|||! !|||.!!.!!|||||| ! !!!.!!.!! !! ! TyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetCysL 263199 : TACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGTGCA : 263258 159 : yrTyrIleValLeuProIleSerValGlyLysIleGlnAlaAlaAspAlaAsnLeuTh : 177 ! ! !:!!||| ! !!.!!!!!..! ! !|||:!!! !!.!:!!! !!.! !! ysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrArgIl 263259 : AGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAGAAT : 263315 178 : rPheMetProLeuValPheProPheSerLysLeuIleIleAspThrArgTyrSerPro : 196 !.!. !||| !! !||| ! ! !||| !|||||| ..! ! !:!||| eLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThrAsnPro 263316 : TCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAATCCG : 263372 197 : ThrAsnGluIleValPhePheLeuGlnLeuIleGlyGlyAlaValMetHisGlyValT : 216 |||||||||||| !!.!! ! !|||!!!:!:..!||| !:!!:!: !!.!..!| ThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaThrT 263373 : ACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGACAA : 263432 217 : hrSerAlaAlaCysGlyLeuAlaAlaMetLeuAlaValHisAlaCysGlyGlnMetGl : 235 || !!.!|||! !|||:!!.!!|||:!!!!!|||! !|||||||||||||||:!!.! hrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLeuAs 263433 : CTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTTGAA : 263489 236 : uValLeuMetAsnTrpLeuLysHisLeuValAsp<->GlyArgSerAspMetGlyAsp : 253 .|||||||||::!|||:!!! !.!.!!!|||:!! ..!|||..!!!:! !:!! nValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLysAsn 263490 : CGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAGAAT : 263546 254 : ThrValAspAlaArgIleAlaSerValValSerGlnHisValArgIleLeuLys : 271 ! ! !.!!..!|||!.! !:!!|||..!!!.|||:!!|||:!!|||!:! LeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeuArg 263547 : CTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTGAGG : 263602 vulgar: gi|383850681|ref|XP_003700913.1| 22 271 . KQ414889.1 262852 263602 + 393 M 224 672 G 0 3 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262853 263602 393 + . gene_id 13 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262853 263602 . + . KQ414889.1 exonerate:protein2genome:local exon 262853 263602 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262853 263602 393 + . alignment_id 13 ; Query gi|383850681|ref|XP_003700913.1| ; Align 262853 23 672 ; Align 263528 247 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 380 Query range: 22 -> 271 Target range: 274386 -> 275136 23 : SerIleGlnLeuCysHisTrpIleLeuLysProLeuGlyValTrpProArgSerThrA : 42 |||:!:|||||| !!..|||.!!|||||||||:!!|||!.!|||||| !:!!:!! SerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaSerP 274387 : AGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGC : 274444 43 : snLeuThrValAlaGlnIleTrpLeuTyrGlnLeuIleAsnValLeuCysTyrAlaPh : 61 ! !||| ! !:!! ! |||! !!.|||::: |||||||||..!|| roThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCysPh 274445 : CCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTGCTT : 274501 62 : eIleSerPheLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspVal : 80 |||| !! ! !:!!:!!||| !!! !!!!:!!:!!||||||! !! !|||..!:!! eIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGluSerLeu 274502 : CATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGTCTC : 274558 81 : TyrAsnGlnIleLysPhePheGlyProSerSerPheCysMetMetAlaIleMetLysT : 100 :!! :!!:!:|||!!..!!|||||| !.!! !!! .!.!!:!.! !!!:!!.| HisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnT 274559 : CATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATT : 274618 101 : yrTyrLeuMetIleLeuHisGluAsnAspIleArgAspCysIleGlnArgIleGluLe : 119 || ! !:!!:!:|||!.!...!!.!!:||||||! !|||:!::!!!.!!!::!! yrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnTh 274619 : ACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAAC : 274675 120 : uAspTrpLysAsnIleSerHisAspAspAspLysLysIleMetValGluLysAlaLys : 138 !||||||!:!! !:!:!!!... !!:|||:!!:!!:!:|||:!!:!!!!.|||||| rAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsnAlaLys 274676 : AGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAG : 274732 139 : PheGlyArgGlnLeuIleAlaLeuCysThrPhePheMetTyrSerGlyPheAlaPheT : 158 .!!|||||| ! :!! !!!!|||.!! |||||| ! !!!||| !! !! !| IleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuCysT 274733 : ATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTT : 274792 159 : yrTyrIleValLeuProIleSerValGlyLysIleGlnAlaAlaAspAlaAsnLeuTh : 177 ||! !:!::!! ! !!.!!!!!:!! !! :!!|||!.!!.!:!!! !!.! !|| yrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrArgTh 274793 : ATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAAC : 274849 178 : rPheMetProLeuValPheProPheSerLysLeuIleIleAspThrArgTyrSerPro : 196 | ! !||| !! ! ! !! !||| !|||:!!! ..! ! |||||| rValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThrSerPro 274850 : CGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCG : 274906 197 : ThrAsnGluIleValPhePheLeuGlnLeuIleGlyGlyAlaValMetHisGlyValT : 216 |||||||||||||||.!! !! !|||!!!:!:..!||| !:!!:!!:!!..! !. ThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerSerA 274907 : ACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCG : 274966 217 : hrSerAlaAlaCysGlyLeuAlaAlaMetLeuAlaValHisAlaCysGlyGlnMetGl : 235 !! !!.!|||! !.!!|||||||||:!!!!!|||!.!||||||! !||||||:!!.. laValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSe 274967 : CGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAG : 275023 236 : uValLeuMetAsnTrpLeuLysHisLeuValAspGlyArgSerAspMetGlyAspThr : 254 .|||||||||! |||:!!! .!.!!!|||:!! ! !!!!|||...... ... rValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsnLysAsn 275024 : CGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaaaat : 275080 255 : Val<->AspAlaArgIleAlaSerValValSerGlnHisValArgIleLeuLys : 271 ||| ::!..!|||!.! !||||||..!!!.|||:!!|||:!!|||!:! ValTyrPheSerGluIleGlyValValValGluHisHisLeuArgValLeuArg 275081 : gtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTCAGG : 275136 vulgar: gi|383850681|ref|XP_003700913.1| 22 271 . KQ414889.1 274386 275136 + 380 M 233 699 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274387 275136 380 + . gene_id 14 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274387 275136 . + . KQ414889.1 exonerate:protein2genome:local exon 274387 275136 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274387 275136 380 + . alignment_id 14 ; Query gi|383850681|ref|XP_003700913.1| ; Align 274387 23 699 ; Align 275089 256 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 368 Query range: 13 -> 271 Target range: 289711 -> 290482 14 : AspGlyTyrGluArgAsnValLysLeuSerIleGlnLeuCysHisTrpIleLeuLysP : 33 ||| !!||||||! !:!!:!!:::! !!!!.!!:!!|||||||||||||||||||||| AspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleLeuLysP 289712 : GATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCTTGAAAC : 289769 34 : roLeuGlyValTrpPro<->ArgSerThrAsnLeuThrValAlaGlnIleTrpLeuTy : 51 ||:!!|||:!!!::||| !! !!:!..! !!:! ! !:!! ! ! !! roIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgThrAlaSe 289770 : CGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGCGTC : 289826 52 : rGlnLeuIleAsnValLeuCysTyrAlaPheIleSerPheLeuLeuValProCysSer : 70 !|||:!:! !:!!:!!|||! !:!!.!!:!!..!|||:!!:!!||||||! !||| rValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValProPheSer 289827 : GGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCGTTCAGT : 289883 71 : LeuTyrValIleLeuGluValGluAspValTyrAsnGlnIleLysPhePheGlyProS : 90 ! !:!!|||:!!!!!...! !.!.|||:!! !!!.. :!!||| !.!!||||||! HisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuGlyProL 289884 : CATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCGGACCGT : 289943 91 : erSerPheCysMetMetAlaIleMetLysTyrTyrLeuMetIleLeuHisGluAsnAs : 109 !!!!||||||:!!! .!!.!!.!.||||||! !! !.!.! !:!! ! ! :::! euThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGlySerAl 289944 : TGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGGTTCAGC : 290000 110 : pIleArgAspCysIleGlnArgIleGluLeuAspTrpLysAsnIleSerHisAspAsp : 128 ||| !! !|||:!::!!!.!|||||| !|||||||||! :!: !! !!!!:||| aIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAspGluAsp 290001 : GATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGACGAGGAT : 290057 129 : AspLysLysIleMetValGluLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysT : 148 !!::: ||||||:!!..! ! !.!! !.!..!!|||.!.|||||| !||||||. HisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysLeuCysA 290058 : CATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAACTGTGCG : 290117 149 : hrPhePheMetTyrSerGlyPheAlaPheTyrTyrIleValLeuProIleSerValGl : 167 !!.!!|||:!!|||! !||| ! !! !||| !!! !|||:!!|||:!:! ! ! laIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPheSerLy 290118 : CGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTTCTCGAA : 290174 168 : yLysIleGlnAlaAlaAspAlaAsnLeuThrPheMetProLeuValPheProPheSer : 186 !||| ::!!.!:!!!.!|||:!!|||.!!! ||||||..!!:!||| !! ! sLys------SerValAsnGlyAsnValThrIleArgProLeuThrTyrProGlyTyr 290175 : GAAG------AGCGTGAACGGTAACGTGACTATCAGACCTCTAACTTATCCCGGTTAC : 290225 187 : LysLeuIleIleAspThrArgTyrSerProThrAsnGluIleValPhePheLeuGlnL : 206 :!! !.!!.!!|||..!!:! ! ||||||.!! !!||||||||||||! !:!!!!.! GluGluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetHisC 290226 : GAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACT : 290285 207 : euIleGlyGlyAlaValMetHisGlyValThrSerAlaAlaCysGlyLeuAlaAlaMe : 225 !:!! !! ! !:!!! ! ..!:!!|||! !||||||! !.!!|||.!!.!!!! ysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIl 290286 : GTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGAT : 290342 226 : tLeuAlaValHisAlaCysGlyGlnMetGluValLeuMetAsnTrpLeuLysHisLeu : 244 :!!!|||..!|||.!!|||||||||!!::!!:!!! !! !!.. !!|||:!! !!||| ePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAspLeu 290343 : CTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTG : 290399 245 : ValAspGlyArgSerAspMetGlyAspThrValAspAlaArgIleAlaSerValValS : 264 ..! ! !! !!! ! :!!! ! ! !|||..!! !|||:!:||| !||||||| ThrLysArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValValValS 290400 : ACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTGTGA : 290459 265 : erGlnHisValArgIleLeuLys : 271 || ||||||..!||||||||| erGlyHisValGluIleLeuLys 290460 : GCGGTCACGTGGAGATCTTGAAG : 290482 vulgar: gi|383850681|ref|XP_003700913.1| 13 271 . KQ414889.1 289711 290482 + 368 M 25 75 G 0 3 M 130 390 G 2 0 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289712 290482 368 + . gene_id 15 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289712 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289712 290482 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289712 290482 368 + . alignment_id 15 ; Query gi|383850681|ref|XP_003700913.1| ; Align 289712 14 75 ; Align 289790 39 390 ; Align 290180 171 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 362 Query range: 21 -> 274 Target range: 200538 -> 202969 22 : LeuSerIleGlnLeuCysHisTrpIleLeuLysProLeuGlyValTrpProArgSerT : 41 :!!!!!||||||! ! !!.!|||||||||||| !!:!!!.!:!!||| ! !!.!: ValCysIleGlnTrpAsnArgTrpIleLeuLysSerMetAlaLeuTrpPheAspLysS 200539 : GTTTGCATACAGTGGAATCGTTGGATCTTGAAATCAATGGCTTTGTGGTTTGACAAAT : 200596 42 : hrAsnLeuThrValAlaGlnIleTrpLeuTyr-GlnLeuIleAsnValLeuCysTyrA : 60 !!|||:!!:!! !!.!:!!! !! |||:!!#!:!||||||!:!!.!:!!|||!! ! erAsnIleSerProValGluLys***LeuHis#ArgLeuIleSerAlaValCys***G 200597 : CCAACATTTCACCGGTCGAGAAATAACTACACTCGGCTAATCAGTGCCGTTTGTTAAG : 200654 61 : laPheIleSerPheLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAs : 79 .!!!.!!:...:::...|||::: |||||||||:!!|||.!!|||!!:||||||:! lyLeuMetGlyTyrPheLeuIleLeuCysSerLeuHisValPheLeuAspValGluAs 200655 : GATTGATGggttactttttaatattatgcAGTTTACACGTGTTTCTTGACGTAGAAAA : 200711 80 : pValTyrAsnGlnIleLysPhePheGlyPro<->SerSerPheCysMetMetAlaIle : 97 !:!! !!!.:!!||||||!!.|||! !||| ! !.!!|||:!! .!!||| nIleLeuLysLysIleLysLeuPheValProLeuValLeuLeuCysLeuAlaThrIle 200712 : TATACTTAAAAAGATTAAATTGTTTGTTCCCCTAGTACTACTTTGCTTGGCTACGATT : 200768 98 : MetLysTyrTyrLeuMetIleLeuHisGluAsnAspIleArgAspCysIleGlnArgI : 117 :!!|||! !:!!||| !:!!||||||!!::!!|||! ! ! ||| !:!!!.!| LeuLysCysHisLeuSerValLeuHisAspAspAspThrTyrThrCysGlyGluHisI 200769 : TTGAAGTGTCATTTGTCGGTACTTCATGATGACGATACTTACACGTGTGGCGAGCATA : 200828 118 : leGluLeuAspTrpLysAsn<->IleSerHisAspAspAspLysLysIleMetValGl : 135 ||:!!! !!!:|||!:! !! :!!!!!||||||:::|||||||||||| :! leLysTrpGluTrpArgTyrCysValThrHisAspGluAspLysLysIleArgAspLy 200829 : TAAAATGGGAGTGGAGGTATTGTGTCACGCACGACgaggataaaaaaattagagataA : 200885 136 : uLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysThrPhePheMet >>>> Ta : 152 !:::! ! !!. !!! !! !! !:!! ! ... ...||| sArgAspLeuLeuCysLeuLeuHisValGlnGlyAlaLysLysLeuMet++ 200886 : ACGTGATCTTTTGTGCCTTCTGCATGTACAGGgtgcaaaaaaattaatggt....... : 200938 153 : rget Intron 1 >>>> TyrSerGlyPheAlaPheTyrTyrIleValLeuProIl : 164 1681 bp ! !!!!! |||...||||||:::...|||::: !!:! -+CysThrAspPheThrPheTyrPhePheValValSerLe 200939 : ..................tgTGCACAGattttaccttttatttttttgttgtaTCGCT : 202653 165 : eSerValGlyLysIleGlnAlaAlaAspAlaAsnLeuThrPheMetProLeuValPhe : 183 !.!!:!!! !|||!!: !|||! !||| !!:!:!!||| ||| uGlyLeuGluLysMetValAlaGluAspLeuSerValThr---------------Phe 202654 : TGGCTTGGAGAAAATGGTAGCAGAGGATCTTAGTGTGACG---------------TTC : 202695 184 : ProPheSerLysLeuIleIleAspThrArgTyrSerProThrAsnGluIleValPheP : 203 !!|||||| !!!!|||||||||..!||||||||||||..!||||||||| !!|||! SerPheSerGlyPheIleIleAspValArgTyrSerProValAsnGluIlePhePheS 202696 : TCCTTCTCAGGATTTATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCT : 202755 204 : heLeuGlnLeuIleGlyGlyAlaValMetHisGlyValThrSerAlaAlaCysGlyLe : 222 :!!!:!:!!:!!!.!! ! !:!!!!:|||||||||||| !!.!|||||| !!|| erIleArgIleValAlaValIleLeuIleHisGlyValThrValGlyAlaCysCysLe 202756 : CGATTCGAATCGTAGCTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTT : 202812 223 : uAlaAlaMetLeuAlaValHisAlaCysGlyGlnMetGluValLeuMetAsnTrpLeu : 241 |.!!|||:!!!!!|||||||||! !||||||||||||!!:||||||||| !|||||| uThrAlaLeuPheAlaValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeu 202813 : GACAGCGTTGTTTGCGGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTG : 202869 242 : LysHisLeuValAspGlyArgSerAspMetGly--AspThrValAspAlaArgIleAl : 260 :!!||||||:!!||||||||||||||||||.!!##:!! |||:!!!.!|||!!:!. GluHisLeuMetAspGlyArgSerAspMetSer##Asn---ValAsnGlyArgMetVa 202870 : GAACATTTGATGGATGGTCGTTCGGATATGAGTAAAAT---GTGAATGGCAGAATGGT : 202925 261 : aSerValValSerGlnHisValArgIleLeuLysPheLeuGlu : 274 !!!!:!!||||||||||||:!!||||||||||||! !:!!||| lThrIleValSerGlnHisIleArgIleLeuLysCysValGlu 202926 : GACCATCGTGAGCCAACACATACGGATACTGAAATGTGTGGAA : 202969 vulgar: gi|383850681|ref|XP_003700913.1| 21 274 . KQ414889.1 200538 202969 + 362 M 30 90 F 0 1 M 38 114 G 0 3 M 34 102 G 0 3 M 28 84 5 0 2 I 0 1677 3 0 2 M 26 78 G 5 0 M 70 210 F 0 2 M 1 3 G 1 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 200539 202969 362 + . gene_id 16 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 200539 200935 . + . KQ414889.1 exonerate:protein2genome:local exon 200539 200935 . + . insertions 6 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local splice5 200936 200937 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 200936 202616 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 202615 202616 . + . intron_id 0 ; splice_site "tg" KQ414889.1 exonerate:protein2genome:local cds 202617 202969 . + . KQ414889.1 exonerate:protein2genome:local exon 202617 202969 . + . insertions 0 ; deletions 6 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local similarity 200539 202969 362 + . alignment_id 16 ; Query gi|383850681|ref|XP_003700913.1| ; Align 200539 22 90 ; Align 200630 52 114 ; Align 200747 90 102 ; Align 200852 124 84 ; Align 202617 152 78 ; Align 202695 183 210 ; Align 202907 253 3 ; Align 202910 255 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 326 Query range: 174 -> 341 Target range: 300189 -> 301797 175 : AsnLeuThrPheMetProLeuValPheProPheSerLysLeuIleIleAspThrArgT : 194 |||! !|||!:!! ||||||!.!!:!||| !! ! ! ! !.!!|||||||||!:! AsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnT 300190 : AATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAA : 300247 195 : yrSerProThrAsnGluIleValPhePheLeuGlnLeuIleGlyGlyAlaValMetHi : 213 !||||||||| !!|||||||||||||||...... .!!!.!!.! !:!!|||:! hrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTy 300248 : CCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTA : 300304 214 : sGlyValThrSerAlaAlaCysGlyLeuAlaAlaMetLeuAlaValHisAlaCysGly : 232 !..!||||||!!!||||||! !.!!|||||||||!!:!!!!.!..!||| !|||||| rAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGly 300305 : CAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGA : 300361 233 : GlnMetGluValLeuMetAsnTrpLeuLysHisLeuValAspGlyArgSerAspMetG : 252 |||!!::!!:!!! !||| ! |||:!! !!||||||!!: !!! !.!!!!:! !! GlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrGlyGluLysA 300362 : CAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGGGAGAGAAGG : 300421 253 : lyAspThrValAspAlaArgIleAlaSerValValSerGlnHisValArgIleLeu{L : 271 !||| ! !||| !! !:!!!.! :!!||| !!.!.||||||!:!:!!|||{! spAspGlyProAspProLeuValVal---IleValArgAspHisValLysValLeu{A 300422 : ACGACGGTCCTGATCCTTTGGTCGTT---ATCGTTCGAGATCACGTGAAGGTTTTA{A : 300475 272 : y} >>>> Target Intron 1 >>>> {s}PheLeuGluLeuThrGluLysIle : 279 :} 140 bp {!}||| !:!! !..!|||:!!! ! r}++ ++{g}PheAlaLysAsnValGluGluThr 300476 : G}gt.........................ag{A}TTTGCAAAGAACGTTGAGGAAACT : 300639 280 : LeuArgHisIleSerLeuValGluPheLeuGlyCysThrLeuAsnLeuCysLeuLeuS : 299 |||||| !!.!!!!!|||||||||.!!!!!! !! !||||||! !||||||||||||. LeuArgAspPheCysLeuValGluIlePheGluSerThrLeuIleLeuCysLeuLeuG 300640 : TTGCGTGACTTCTGCTTAGTGGAAATCTTCGAGTCCACGCTGATTTTGTGTTTGCTCG : 300699 300 : erTyrTyrValLeuMet >>>> Target Intron 2 >>>> GluTrpGlyThr : 308 .!|||||| !|||:!! 970 bp |||||| !!.! luTyrTyrCysLeuVal++ ++GluTrpGlnAsn 300700 : AATACTACTGTTTGGTGgt.........................agGAATGGCAAAAT : 301696 309 : AsnAspIleMetSerSerAlaThrTyrAlaValLeuLeuMetSerLeuThrPheAsnI : 328 !:!|||! !!::!!! ! !|||!:! !..!||||||! !|||!!!|||||||||| SerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAsnI 301697 : AGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATA : 301756 329 : lePheIlePheCysTyrIleGlyGluLeuValAlaGluGlu : 341 ||||||||||||||||||||||||||:!!:!!:!!|||:!! lePheIlePheCysTyrIleGlyGluIleLeuSerGluGln 301757 : TATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAG : 301797 vulgar: gi|383850681|ref|XP_003700913.1| 174 341 . KQ414889.1 300189 301797 + 326 M 86 258 G 1 0 M 9 27 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 33 99 5 0 2 I 0 966 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300190 301797 326 + . gene_id 17 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300190 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300190 300476 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 300616 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300615 300616 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300617 300716 . + . KQ414889.1 exonerate:protein2genome:local exon 300617 300716 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300717 300718 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300717 301686 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301685 301686 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300190 301797 326 + . alignment_id 17 ; Query gi|383850681|ref|XP_003700913.1| ; Align 300190 175 258 ; Align 300448 262 27 ; Align 300618 272 99 ; Align 301687 305 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 301 Query range: 22 -> 280 Target range: 236855 -> 237626 23 : SerIleGlnLeuCysHisTrpIleLeuLysProLeuGlyValTrpProArgSerThrA : 42 |||:!!|||! ! !!..||| :!!||| !:!!|||..!||||||!:!! !:!!: SerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerS 236856 : AGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGT : 236913 43 : snLeuThrValAlaGlnIleTrpLeuTyrGlnLeuIleAsnValLeuCysTyrAlaPh : 61 :: ! !! ! !.!.||| ! !!:!:!!:!!||||||:!!||||||.!! erAsnLeuGluArgAsnIle------SerArgIleLeuAsnValIleCysTyrThrAl 236914 : CGAACCTCGAGAGAAACATC------TCTCGAATATTAAACGTGATCTGCTACACCGC : 236964 62 : eIleSerPheLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspVal : 80 ||| !|||! !:!!:!!||||||||||||:!!:!!!!:|||||| !! ! ! !! aIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPhe 236965 : AATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTC : 237021 81 : TyrAsnGlnIleLysPhePheGlyProSerSerPheCysMetMetAlaIleMetLysT : 100 |||!..:!!:!:|||.!..!!||| !!! !||| !!! :!!.!...!|||!!:!..| TyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerT 237022 : TACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTT : 237081 101 : yrTyrLeuMetIleLeuHisGluAsnAspIleArgAspCysIleGlnArgIleGluLe : 119 || !:!!:!!:!:|||!.....!!. !|||||| !!! !.!!.!.!.!!!:||| yrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluTh 237082 : ACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGAC : 237138 120 : uAspTrpLysAsnIleSerHisAspAspAspLysLysIleMetValGluLysAlaLys : 138 !||||||!:!!..! :::... ::: |||::::::|||:!!:!! ! |||||| rAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLys 237139 : CGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAA : 237195 139 : PheGlyArgGlnLeuIleAlaLeuCysThrPhePheMetTyrSerGlyPheAlaPheT : 158 |||.!!||| ! ! !! !||||||.!!|||!!::!!.!!|||.!. ! | PheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyT 237196 : TTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGAT : 237255 159 : yrTyrIleValLeuProIleSerValGlyLysIleGlnAlaAlaAspAlaAsnLeuTh : 177 ||! !:!!:!! ! !! !!!!..! ! :!! !!.!!.!:!! !!.! !! yrCysValMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIl 237256 : ATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGAT : 237312 178 : rPheMetProLeuValPheProPheSerLysLeuIleIleAspThrArgTyrSerPro : 196 !!!. !||| !!!.|||.!.! !||| !:!!:!! ..! ! !:! !! eLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThr 237313 : CTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACT : 237369 197 : ThrAsnGluIleValPhePheLeuGlnLeuIleGlyGlyAlaValMetHisGlyValT : 216 ! !|||!!:|||||| !!!!.! !|||!!!:!!..!||| !:!! !:!!..! !. MetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerA 237370 : ATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTG : 237429 217 : hrSerAlaAlaCysGlyLeuAlaAlaMetLeuAlaValHisAlaCysGlyGlnMetGl : 235 !!! !::!!.! .!!|||.!!::! |||.!! !||||||! !||||||:!!.. laIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSe 237430 : CGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAG : 237486 236 : uValLeuMetAsnTrpLeuLysHisLeuVal<->AspGlyArgSerAspMetGlyAsp : 253 .|||:!!||| ! !:!!:!! !!!!!||| !!:!.!||| !! ! !||| rValValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAsp 237487 : CGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGAC : 237543 254 : ThrValAspAlaArgIleAlaSerValValSerGlnHisValArgIleLeuLysPheL : 273 ! ! !! !..!||| !!!!!:!!|||..!:!!|||:!!|||:!:||||||! : AspHisPheAspGluIleProThrIleValGluGluHisLeuArgValLeuLys***V 237544 : GATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAG : 237603 274 : euGluLeuThrGluLysIleLeu : 280 !! ||| !!!: !|||||| alCysLeuLeuAspLeuIleLeu 237604 : TATGTTTGTTGGATTTGATTTTG : 237626 vulgar: gi|383850681|ref|XP_003700913.1| 22 280 . KQ414889.1 236855 237626 + 301 M 26 78 G 2 0 M 195 585 G 0 3 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236856 237626 301 + . gene_id 18 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236856 237626 . + . KQ414889.1 exonerate:protein2genome:local exon 236856 237626 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236856 237626 301 + . alignment_id 18 ; Query gi|383850681|ref|XP_003700913.1| ; Align 236856 23 78 ; Align 236934 51 585 ; Align 237522 246 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 275 Query range: 302 -> 394 Target range: 224317 -> 224658 303 : LeuMetGluTrpGlyThrAsnAspIleMetSerSerAlaThrTyrAlaValLeuLeuM : 322 !!!...||||||...:::::: !!:!!! |||:!!!.!|||||| !:!!||||||| PheGlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuM 224318 : TTTCaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCA : 224375 323 : etSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl : 341 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||:: etSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl 224376 : TGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAca : 224432 342 : uCysArg{L} >>>> Target Intron 1 >>>> {ys}IleGlyGluMetSer : 349 : :::{|} 65 bp {||}||||||::!:!!||| nValLys{L}-+ +-{ys}IleGlyGlnValSer 224433 : ggtgaaa{a}at.........................aa{aa}attggacaAGTGTCG : 224521 350 : TyrMetIleAspTrpTyrArgLeuProGlyLysArgLysLeuSerValIleLeuMetI : 369 |||||||||||||||||||||||| !!|||!!.!:!||||||!!! !||||||!!:| TyrMetIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleI 224522 : TACATGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAA : 224581 370 : leGluMetSerAsnSerSerIleLysLeuThrAlaGlyAsnIleValIleLeuSerTy : 388 ||! !||||||||||||||||||||||||||||||||||||!!:||| !|||!!! leAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLe 224582 : TCGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCT : 224638 389 : rSerLysPheGlyAspVal : 394 !!!! |||||||||||| uThrThrPheGlyAspVal 224639 : AACCACTTTCGGTGACGTA : 224658 vulgar: gi|383850681|ref|XP_003700913.1| 302 394 . KQ414889.1 224317 224658 + 275 M 41 123 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224318 224658 275 + . gene_id 19 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224318 224441 . + . KQ414889.1 exonerate:protein2genome:local exon 224318 224441 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224442 224443 . + . intron_id 1 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local intron 224442 224506 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224505 224506 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 224507 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224507 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224318 224658 275 + . alignment_id 19 ; Query gi|383850681|ref|XP_003700913.1| ; Align 224318 303 123 ; Align 224509 345 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 262 Query range: 14 -> 236 Target range: 194150 -> 194807 15 : GlyTyrGluArgAsnValLysLeuSerIleGlnLeuCysHisTrpIleLeuLysProL : 34 ..!|||:!! !:!!..!:!!! !:!!:!!!:!:!!... ! !:!!|||! !|||: AsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProI 194151 : AATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGA : 194208 35 : euGlyValTrpProArgSerThrAsnLeuThrValAlaGlnIleTrpLeuTyrGlnLe : 53 !!|||:!!|||||||||..! !::!||| ! ! !::!:!! ! |||!:! ! leGlyIleTrpProArgGluAspSerLeuArg---AspArgValArgLeuPheAlaGl 194209 : TCGGTATCTGGCCAAGGGAGGATTCTCTTCGC---GACAGAGTCCGACTGTTCGCTCA : 194262 54 : uIleAsnValLeuCysTyrAlaPheIleSerPheLeuLeuValProCysSerLeuTyr : 72 !! !..!|||:!! !:!|||!!.!!:!!!||||||||||||||| ! !:!!||| nThrGlyValVal---PheAlaLeuMetCysPheLeuLeuValProHisValIleTyr 194263 : AACTGGCGTGGTC---TTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTAC : 194316 73 : ValIleLeuGluValGluAspValTyrAsnGlnIleLysPhePheGlyProSerSerP : 92 ..! !!!!!!: !||||||:!! !.. ! !!:||| ! .!!!.! !!..! !| ThrTyrPheAspCysGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValP 194317 : ACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGT : 194376 93 : heCysMetMetAlaIleMetLysTyrTyrLeuMetIleLeuHisGluAsnAspIleAr : 111 || !!:!!:!!||||||!!:|||!:!!:: !||||||:!!:!!..!!!.!!:||||| heSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnArgLysGluIleAr 194377 : TCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAG : 194433 112 : gAspCysIleGlnArgIleGluLeuAspTrpLysAsnIleSerHisAspAspAspLys : 130 | !|||:!:! !..!!!:||| !.!.!::!:!:!!:!:..! !!!:!!:|||::! gPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCysGluGluAspArg 194434 : ATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGA : 194490 131 : LysIleMetValGluLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysThrPheP : 150 :!!:!:|||..!.!. ||||||.!!|||||| !!!! !.!!|||! ! ! . GlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyL 194491 : CAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGAC : 194550 151 : heMetTyrSerGlyPheAlaPheTyrTyrIleValLeuProIleSerValGlyLysIl : 169 !! |||.!!||| ! ! |||:!!|||:!!||||||:!:! ! !! !!:!|| euSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluArgIl 194551 : TTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGAT : 194607 170 : eGlnAlaAlaAspAlaAsnLeuThrPheMetProLeuValPheProPheSerLysLeu : 188 | !! !||| ||| !||| !!:|||||| !!:! ! !!:! ! :!! eValLysGluAsp---AsnSerThrGlnIleProLeuProTyrLeuSerAsnTyrVal 194608 : TGTCAAGGAGGAT---AACAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTT : 194661 189 : IleIleAspThrArgTyrSerProThrAsnGluIleValPhePheLeuGlnLeuIleG : 208 .!!.!!! ! !..! !!||||||! ! !!||||||..!||| !!! !|||:!!:!: PhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerGlnIleLeuI 194662 : TTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGA : 194721 209 : lyGlyAlaValMetHisGlyValThrSerAlaAlaCysGlyLeuAlaAlaMetLeuAl : 227 !.!!::!:!!!!: ..!..!!.!!!!!.! !! !.!!|||!.!|||! :!! leSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIl 194722 : TTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTAT : 194778 228 : aValHisAlaCysGlyGlnMetGluVal : 236 !:!!|||..!|||||| !.!.|||||| eMetHisCysCysGlyLeuPheGluVal 194779 : TATGCATTGCTGTGGCTTGTTCGAAGTG : 194807 vulgar: gi|383850681|ref|XP_003700913.1| 14 236 . KQ414889.1 194150 194807 + 262 M 30 90 G 1 0 M 12 36 G 1 0 M 115 345 G 1 0 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194151 194807 262 + . gene_id 20 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194151 194807 . + . KQ414889.1 exonerate:protein2genome:local exon 194151 194807 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 194151 194807 262 + . alignment_id 20 ; Query gi|383850681|ref|XP_003700913.1| ; Align 194151 15 90 ; Align 194241 46 36 ; Align 194277 59 345 ; Align 194622 175 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 235 Query range: 304 -> 394 Target range: 272836 -> 273176 305 : GluTrpGlyThrAsnAspIleMetSerSerAlaThrTyrAlaValLeuLeuMetSerL : 324 |||||| ! !:!!|||.!!..!||| !.!!|||||| !:!!:!!|||!!:|||: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 325 : euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlu >>> : 342 !:|||||||||||||||||| |||||||||||||||:!!:!!.!!|||..! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 343 : > Target Intron 1 >>>> CysArgLysIleGlyGluMetSerTyrMetIleA : 353 70 bp |||:::||||||||||||:!: !||||||! : ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 354 : spTrpTyrArgLeuProGlyLysArgLysLeuSerValIleLeuMetIleGluMetSe : 372 !!|||||| !|||||||||||| !! |||..!:!!||||||!!:|||..!! !! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 373 : rAsnSerSerIleLysLeuThrAlaGlyAsnIleValIleLeuSerTyrSerLysPhe : 391 !!:! ! !||||||:!!|||||||||!..|||||| !:!!||| ! !! !||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 392 : GlyAspVal : 394 ||||||||| GlyAspVal 273166 : GGCGATGTA : 273176 vulgar: gi|383850681|ref|XP_003700913.1| 304 394 . KQ414889.1 272836 273176 + 235 M 37 111 5 0 2 I 0 66 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273176 235 + . gene_id 21 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273176 235 + . alignment_id 21 ; Query gi|383850681|ref|XP_003700913.1| ; Align 272837 305 111 ; Align 273018 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 230 Query range: 13 -> 201 Target range: 294663 -> 295227 14 : AspGlyTyrGluArgAsnValLysLeuSerIleGlnLeuCysHisTrpIleLeuLysP : 33 ||| ! !!..!!.!:!!||| ! !|||:!!:!!! !|||!.. !!:!:||||||| AspThrAsnArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysP 294664 : GATACTAACAGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAAC : 294721 34 : roLeuGlyValTrpProArgSerThrAsnLeuThrValAlaGlnIleTrpLeuTyrGl : 52 ||:!!|||:!!||||||! !! ! !!:!! !||| ! !! !! ! :!! !.. roIleGlyLeuTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSe 294722 : CGATCGGTCTTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTC : 294778 53 : nLeuIleAsnValLeu<->CysTyrAlaPheIleSerPheLeuLeuValProCysSer : 70 !:!!||| :!! ! ||| ! !:!! !|||:!!||||||||||||.!! rIleIleLeuIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGly 294779 : GATAATTCTGATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGA : 294835 71 : LeuTyrValIleLeuGluValGluAspValTyrAsnGlnIleLysPhePheGlyProS : 90 ! !!:! !:!!!!!.!.|||::::::||| ::!!!:|||.!!.!.|||||| TyrPheCysValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProV 294836 : TACTTCTGTGTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGG : 294895 91 : erSerPheCysMetMetAlaIleMetLysTyrTyrLeuMetIleLeuHisGluAsnAs : 109 ! !!:!! !|||:!::!!!!::!:!:!||| !! !:!::!!||| ! ! !! alLeuTyrSerMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAl 294896 : TACTATACTCTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGC : 294952 110 : pIleArgAspCysIleGlnArgIleGluLeuAspTrpLysAsnIleSerHisAspAsp : 128 .!!!:! !!||||||:!! !|||||| !||||||||| |||..!:!! !!: aPheLysHisCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGlu 294953 : GTTCAAGCATTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAA : 295009 129 : AspLysLysIleMetValGluLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysT : 148 !!::! !||||||:!!:!!!!.|||! ! !! !!:!::!:!!! !!.! !! !| HisArgAlaIleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheT 295010 : CACCGAGCGATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTA : 295069 149 : hrPhePheMetTyrSerGlyPheAlaPheTyrTyrIleValLeuProIleSerValGl : 167 ||.!!.!.!!:||||||..! !.!! |||:!! !:!!:::|||... .. hrIleIleIleTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAs 295070 : CTATTATAATCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaa : 295126 168 : yLysIleGlnAlaAlaAspAlaAsnLeuThrPheMetProLeuValPheProPheSer : 186 . :!::!! ! ! ! !||| |||.!! !!||| !.!!||| !! ! nAlaLeuGluAsnLysLysAsnAsn---ThrIleArgAlaLeuProIleProGlyTyr 295127 : cgctTTGGAGAACAAGAAGAATAAT---ACGATTCGTGCGTTACCAATTCCTGGCTAC : 295180 187 : LysLeuIleIleAspThrArgTyrSerProThrAsnGluIleVal : 201 :!!|||.!!:!!|||.!! !! !||||||||| !!||||||:!! GluLeuPheValAspAlaTyrSerSerProThrTyrGluIleIle 295181 : GAGTTATTCGTAGACGCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: gi|383850681|ref|XP_003700913.1| 13 201 . KQ414889.1 294663 295227 + 230 M 44 132 G 0 3 M 118 354 G 1 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294664 295227 230 + . gene_id 22 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294664 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294664 295227 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294664 295227 230 + . alignment_id 22 ; Query gi|383850681|ref|XP_003700913.1| ; Align 294664 14 132 ; Align 294799 58 354 ; Align 295153 177 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 301 -> 394 Target range: 206041 -> 206401 302 : ValLeuMetGluTrpGlyThrAsnAspIleMetSerSerAlaThrTyrAlaValLeuL : 321 |||!!! !||||||! !!.!|||:!!! !! :!! ! !..!||| !..!|||! ValPhe***GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuG 206042 : GTGTTTTAGGAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGC : 206099 322 : euMetSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGl : 340 !!!:|||! !|||||| !:!!||||||.!.||||||||||||:!!|||:!! !!! lnIleSerCysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAs 206100 : AGATATCTTGTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGA : 206156 341 : uGlu >>>> Target Intron 1 >>>> CysArgLysIleGlyGluMetSerT : 350 ::!! 81 bp !!.! :!:||| !! |||! pGln++ ++AsnHisValValGlyLeuThrSerC 206157 : TCAAgt.........................agAACCACGTCGTGGGATTGACATCTT : 206267 351 : yrMetIleAspTrpTyrArgLeuProGlyLysArgLysLeuSerValIleLeuMetIl : 369 !! !:!::!!|||||||||||||||..!!:!!.! !! !|||:!!||||||!!:|| ysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIl 206268 : GCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAAT : 206324 370 : eGluMetSerAsnSerSerIleLysLeuThrAlaGlyAsnIleValIleLeuSerTyr : 388 |! |||||||||! ! !!||||||||||||||||||!!.!!: !! !:!!|||! eAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeu 206325 : TGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTA : 206381 389 : SerLysPheGlyAspVal : 394 :!!!..||| !|||||| AlaSerPheThrAspVal 206382 : GCTAGTTTCACCGATGTA : 206401 vulgar: gi|383850681|ref|XP_003700913.1| 301 394 . KQ414889.1 206041 206401 + 183 M 40 120 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206042 206401 183 + . gene_id 23 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206042 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206042 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206042 206401 183 + . alignment_id 23 ; Query gi|383850681|ref|XP_003700913.1| ; Align 206042 302 120 ; Align 206243 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 179 Query range: 15 -> 162 Target range: 299671 -> 300114 16 : TyrGluArgAsnValLysLeuSerIleGlnLeuCysHisTrpIleLeuLysProLeuG : 35 |||:!!!.!:!!:!! ! ! !!!!:!:|||:!!|||!!.|||:!:|||||||||:!!| TyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleG 299672 : TACCAAAATGACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCG : 299729 36 : lyValTrpProArgSerThrAsnLeuThrValAlaGlnIleTrpLeuTyrGlnLeuIl : 54 ||||||||! ! ! ! !.!.! !:!! ! !! ! ! ||| !..!:!!:! lyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuValSerIleVa 299730 : GAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGT : 299786 55 : e<->AsnValLeuCysTyrAlaPheIleSerPheLeuLeuValProCysSerLeuTyr : 72 ! ! ..!:!!|||!:!:!! !:!:! !|||:!!:!!:!!|||! !.!!! !||| lLeuMetThrIleCysPheSerSerLeuPhePheIleValLeuProSerGlyHisTyr 299787 : TCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTAC : 299843 73 : ValIleLeuGluValGluAspValTyrAsnGlnIleLysPhePheGlyProSerSerP : 92 :!!.!!!!!! !! !:!!..!:!!:!! !:!!:!:||| ! ||||||||| !.!!| IlePhePheAlaGluLysSerIleHisValLysValLysValPheGlyProValGlyP 299844 : ATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTT : 299903 93 : heCysMetMetAlaIleMetLysTyrTyrLeuMetIleLeuHisGluAsnAspIleAr : 111 |||||:!: :!!|||:!:||||||! !! !:!: !|||:!!! ..!! .!!.. heCysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGl 299904 : TTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGA : 299960 112 : gAspCysIleGlnArgIleGluLeuAsp--TrpLysAsnIleSerHisAspAspAspL : 130 ! |||||||||!.!:!!||| !|||## ... !...:!! !!: uArgCysIleGlnHisValGluArgAsp##---UnkUnkUnkUnkUnkSerAsnHisA 299961 : ACGATGCATCCAACACGTCGAGAGAGACNN---NNNNNNNNNNNNNNTTCGAATCATC : 300016 131 : ysLysIleMetValGluLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysThrPh : 149 ::! !||||||:!!..! ! !.!! .!..!!|||.!.|||! .!!:!!|||.!! ! rgThrIleMetLeuArgTyrValThrMetSerArgAsnLeuThrThrValCysAlaVa 300017 : GTACGATCATGTTGAGATACGTGACTATGAGCAGAAATCTGACGACCGTGTGCGCCGT : 300073 150 : ePheMetTyrSerGlyPheAlaPheTyrTyrIleValLeu : 162 |||:!:|||:!!||| ! !! |||:!!! |||:!! lPheLeuTyrAlaGlyGlyMetSerTyrHisThrValMet 300074 : GTTTCTTTACGCAGGTGGTATGTCGTATCACACGGTGATG : 300114 vulgar: gi|383850681|ref|XP_003700913.1| 15 162 . KQ414889.1 299671 300114 + 179 M 39 117 G 0 3 M 66 198 F 0 2 G 1 0 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299672 300114 179 + . gene_id 24 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299672 300114 . + . KQ414889.1 exonerate:protein2genome:local exon 299672 300114 . + . insertions 3 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local similarity 299672 300114 179 + . alignment_id 24 ; Query gi|383850681|ref|XP_003700913.1| ; Align 299672 16 117 ; Align 299792 55 198 ; Align 299992 122 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 340 -> 400 Target range: 238625 -> 238805 341 : GluCysArgLysIleGlyGluMetSerTyrMetIleAspTrpTyrArgLeuProGlyL : 360 :!!||| !|||:!!||||||:!! !||||||! !||||||||| !|||||| !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 361 : ysArgLysLeuSerValIleLeuMetIleGluMetSerAsnSerSerIleLysLeuTh : 379 :!|||! |||..!:!!||||||!!:|||:!! |||||| ! !:!!|||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 380 : rAlaGlyAsnIleValIleLeuSerTyrSerLysPheGlyAspValValLysThrAla : 398 |||||||!!.:!!:!! !:!!||| !! !! !|||||||||||| !:!!||| ! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 399 : ValAla : 400 :!!||| LeuAla 238798 : CTTGCT : 238805 vulgar: gi|383850681|ref|XP_003700913.1| 340 400 . KQ414889.1 238625 238805 + 153 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238805 153 + . gene_id 25 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238805 153 + . alignment_id 25 ; Query gi|383850681|ref|XP_003700913.1| ; Align 238626 341 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 338 -> 394 Target range: 234979 -> 235147 339 : AlaGluGluCysArgLysIleGlyGluMetSerTyrMetIleAspTrpTyrArgLeuP : 358 .!!:!!:!!|||! !|||:!!||||||! !||||||! !!!:||||||||||||| ThrGlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuP 234980 : ACTCAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTAC : 235037 359 : roGlyLysArgLysLeuSerValIleLeuMetIleGluMetSerAsnSerSerIleLy : 377 || !|||! ! |||.!!:!!:!!:!!!!:|||...! !|||!:!! ! !||||| roHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLy 235038 : CTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAA : 235094 378 : sLeuThrAlaGlyAsnIleValIleLeuSerTyrSerLysPheGlyAspVal : 394 |:!!|||||||||!!..!!:!! !:!!||| !:!!! !|||||||||||| sIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235095 : AATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: gi|383850681|ref|XP_003700913.1| 338 394 . KQ414889.1 234979 235147 + 143 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234980 235147 143 + . gene_id 26 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234980 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234980 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234980 235147 143 + . alignment_id 26 ; Query gi|383850681|ref|XP_003700913.1| ; Align 234980 339 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 339 -> 394 Target range: 277548 -> 277713 340 : GluGluCysArgLysIleGlyGluMetSerTyrMetIleAspTrpTyrArgLeuProG : 359 ..!:!!|||!:!|||:!!||||||:!! !||||||! :!!|||||| !||||||! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 360 : lyLysArgLysLeuSerValIleLeuMetIleGluMetSerAsnSerSerIleLysLe : 378 !||| !! |||!:!:!!:!!|||!!:|||..!! |||!:! ||||||:: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 379 : uThrAlaGlyAsnIleValIleLeuSerTyrSerLysPheGlyAspVal : 394 :|||||||||...:::::: :::||| ! !! !|||||||||||| eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspVal 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTA : 277713 vulgar: gi|383850681|ref|XP_003700913.1| 339 394 . KQ414889.1 277548 277713 + 138 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277713 138 + . gene_id 27 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277549 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277713 138 + . alignment_id 27 ; Query gi|383850681|ref|XP_003700913.1| ; Align 277549 340 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 340 -> 394 Target range: 264723 -> 264885 341 : GluCysArgLysIleGlyGluMetSerTyrMetIleAspTrpTyrArgLeuProGlyL : 360 :!!|||!:!|||:!!||||||:!! !|||||| :!!|||||| !|||||| !| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 361 : ysArgLysLeuSerValIleLeuMetIleGluMetSerAsnSerSerIleLysLeuTh : 379 || !! |||..!:!!||||||!!:||| !! |||!:! ! !.!!|||!!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 380 : rAlaGlyAsnIleValIleLeuSerTyrSerLysPheGlyAspVal : 394 |||||||!!.|||:!! !:!!||| ! !! !|||.!!|||||| rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: gi|383850681|ref|XP_003700913.1| 340 394 . KQ414889.1 264723 264885 + 121 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264885 121 + . gene_id 28 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264885 121 + . alignment_id 28 ; Query gi|383850681|ref|XP_003700913.1| ; Align 264724 341 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 267 -> 304 Target range: 224128 -> 224239 268 : ArgIleLeuLysPheLeuGluLeuThrGluLysIleLeuArgHisIleSerLeuValG : 287 !:! !! !!:!|||||| !! !||||||||| !|||!:!!!.:!!|||!!!|||| LysCysCysArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValG 224129 : AAATGTTGCAGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGG : 224186 288 : luPheLeuGlyCysThrLeuAsnLeuCysLeuLeuSerTyrTyrValLeuMet : 304 ||||||||||||||! !||||||:!!|||||||||.!!|||||||||:!!:!! luPheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleVal 224187 : AATTTCTAGGCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTG : 224239 vulgar: gi|383850681|ref|XP_003700913.1| 267 304 . KQ414889.1 224128 224239 + 117 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224129 224239 117 + . gene_id 29 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224129 224239 . + . KQ414889.1 exonerate:protein2genome:local exon 224129 224239 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224129 224239 117 + . alignment_id 29 ; Query gi|383850681|ref|XP_003700913.1| ; Align 224129 268 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 297 -> 345 Target range: 297439 -> 297583 298 : LeuSerTyrTyrValLeuMetGluTrpGlyThrAsnAspIleMetSerSerAlaThrT : 317 |||...|||::: ...... !||| !|||:!!|||!!:!!:! !.!!!.!||| LeuLysTyrHisPhePheGlnGlyTrpLysThrHisAspMetIlePheGlyValThrI 297440 : ttaaaatatcatttttttcaggGATGGAAAACTCACGATATGATTTTTGGGGTAACGA : 297497 318 : yrAlaValLeuLeuMetSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGl : 336 !!.!! !!!!:!!:!:|||:!!|||||||||||||||:!!!!.|||:!! !||||| leGlyGlyPheMetLeuSerIleThrPheAsnIlePheValLeuCysHisAlaGlyGl 297498 : TCGGCGGTTTCATGCTTTCGATCACTTTTAATATATTCGTATTATGTCATGCAGGTGA : 297554 337 : uLeuValAlaGluGluCysArgLysIle : 345 ||||:!!!.!|||||| ! !|||:!: uLeuLeuValGluGluValProLysVal 297555 : ACTTCTTGTCGAGGAGGTACCGAAAGTG : 297583 vulgar: gi|383850681|ref|XP_003700913.1| 297 345 . KQ414889.1 297439 297583 + 113 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297440 297583 113 + . gene_id 30 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297440 297583 . + . KQ414889.1 exonerate:protein2genome:local exon 297440 297583 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297440 297583 113 + . alignment_id 30 ; Query gi|383850681|ref|XP_003700913.1| ; Align 297440 298 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 343 -> 408 Target range: 292398 -> 292593 344 : LysIleGlyGluMetSerTyrMetIleAspTrpTyrArgLeuProGlyLysArgLysL : 363 :!!|||!.!.!. |||||| ! !!!:||||||!.!|||||| !!::!!:! ! GluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgArgLysAlaA 292399 : GAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGGCTC : 292456 364 : euSerValIleLeuMetIleGluMetSerAsnSerSerIleLysLeuThrAlaGlyAs : 382 !..!:!!:!!|||:!!:!!! !!:!!!!!. ! !!||||||||||||||||||!! rgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuThrAlaGlyLy 292457 : GTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGGCAA : 292513 383 : nIleValIleLeuSerTyrSerLysPheGlyAspValValLysThrAlaValAlaPhe : 401 .||| !!:!!||||||! !:!! ||||||! !||| !:!!:!! !:!!!.!!!. sIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSerLysLeuValLeu 292514 : AATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCAAAACTAGTCTTG : 292570 402 : LeuAsnValLeuArgThrVal : 408 :!!:!! ! !|||! !||| IleHis***GluArgIleVal 292571 : ATACACTAAGAACGTATAGTT : 292593 vulgar: gi|383850681|ref|XP_003700913.1| 343 408 . KQ414889.1 292398 292593 + 111 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292399 292593 111 + . gene_id 31 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292399 292593 . + . KQ414889.1 exonerate:protein2genome:local exon 292399 292593 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292399 292593 111 + . alignment_id 31 ; Query gi|383850681|ref|XP_003700913.1| ; Align 292399 344 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 301 -> 344 Target range: 264528 -> 264657 302 : ValLeuMetGluTrpGlyThrAsnAspIleMetSerSerAlaThrTyrAlaValLeuL : 321 |||!!!..!||||||! !!:!:!:||||||...::: ..!|||||| !:!!:!!| ValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleL 264529 : GTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATAC : 264586 322 : euMetSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGl : 340 ||!!:|||:!! ! !|||||||||:!!.!.|||||||||||||||:!!:!!.!!|| euIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGl 264587 : TGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGA : 264643 341 : uGluCysArgLys : 344 |::: ||| uGlnValIleLys 264644 : Gcaggtaattaaa : 264657 vulgar: gi|383850681|ref|XP_003700913.1| 301 344 . KQ414889.1 264528 264657 + 109 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264529 264657 109 + . gene_id 32 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264529 264657 . + . KQ414889.1 exonerate:protein2genome:local exon 264529 264657 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264529 264657 109 + . alignment_id 32 ; Query gi|383850681|ref|XP_003700913.1| ; Align 264529 302 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 304 -> 338 Target range: 291368 -> 291470 305 : GluTrpGlyThrAsnAspIleMetSerSerAlaThrTyrAlaValLeuLeuMetSerL : 324 ||||||! !!:!!:!||| !!:.!!! ! !||||||!.!..!||||||! |||! GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 325 : euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuVal : 338 !!||||||||||||.!.||||||||||||:!!|||||||||:!! heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeu 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTT : 291470 vulgar: gi|383850681|ref|XP_003700913.1| 304 338 . KQ414889.1 291368 291470 + 107 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 291470 107 + . gene_id 33 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 291369 291470 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291470 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 291470 107 + . alignment_id 33 ; Query gi|383850681|ref|XP_003700913.1| ; Align 291369 305 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 339 -> 394 Target range: 283273 -> 283438 340 : GluGluCysArgLysIleGlyGluMetSerTyrMetIleAspTrpTyrArgLeuProG : 359 ..!:!!|||!:!|||:!!||||||:!! !||||||! :!!! !!:! !||||||! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 360 : lyLysArgLysLeuSerValIleLeuMetIleGluMetSerAsnSerSerIleLysLe : 378 !||| !! |||!:!:!!:!!|||!!:|||..!! |||!:! ||||||:: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 379 : uThrAlaGlyAsnIleValIleLeuSerTyrSerLysPheGlyAspVal : 394 :||||||......:::::: ::!||| ! !! !|||! !|||||| eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspVal 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTA : 283438 vulgar: gi|383850681|ref|XP_003700913.1| 339 394 . KQ414889.1 283273 283438 + 105 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283438 105 + . gene_id 34 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283438 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283438 105 + . alignment_id 34 ; Query gi|383850681|ref|XP_003700913.1| ; Align 283274 340 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 304 -> 341 Target range: 277371 -> 277482 305 : GluTrpGlyThrAsnAspIleMetSerSerAlaThrTyrAlaValLeuLeuMetSerL : 324 ||||||..! !!:!|||:!!..!!!!! !.!!|||:!! !:!!:!!|||!!:|||: GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 325 : euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlu : 341 !: |||||||||||| ! ! |||||||||||||||:!!:!!.!!|||:!! etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAG : 277482 vulgar: gi|383850681|ref|XP_003700913.1| 304 341 . KQ414889.1 277371 277482 + 104 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277482 104 + . gene_id 35 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277482 104 + . alignment_id 35 ; Query gi|383850681|ref|XP_003700913.1| ; Align 277372 305 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 269 -> 312 Target range: 234518 -> 234647 270 : LeuLysPheLeuGluLeuThrGluLysIleLeuArgHisIleSerLeuValGluPheL : 289 !!!!..|||:!!..! !! !|||!!.:!!:!!!.!! |||!!!|||||||||!!.: PheSerPheIleArgAsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuV 234519 : TTCAGTTTTATACGGAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGG : 234576 290 : euGlyCysThrLeuAsnLeuCysLeuLeuSerTyrTyrValLeuMetGluTrpGlyTh : 308 !!|||||||||||||||:!!|||:!!|||..!||||||:!!|||! !! ! ! !|| alGlyCysThrLeuAsnMetCysMetLeuGluTyrTyrLeuLeuThrValArgPheTh 234577 : TAGGATGCACGTTGAACATGTGCATGCTCGAGTATTATTTACTCACGGTACGTTTTac : 234633 309 : rAsnAspIleMet : 312 |||| |||::: rAsnLysIleLeu 234634 : taataaaattctt : 234647 vulgar: gi|383850681|ref|XP_003700913.1| 269 312 . KQ414889.1 234518 234647 + 101 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234519 234647 101 + . gene_id 36 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234519 234647 . + . KQ414889.1 exonerate:protein2genome:local exon 234519 234647 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234519 234647 101 + . alignment_id 36 ; Query gi|383850681|ref|XP_003700913.1| ; Align 234519 270 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 609 Query range: 3 -> 242 Target range: 289681 -> 290401 4 : ArgSerPheAspAsnValValLeuLysAsnSerTyrTyrSerAlaAspIleGlnTyrS : 23 |||||||||..!!:!! ! !! !..!|||..! !|||..!.!!||||||!::|||! ArgSerPheSerSerAspArgProSerAsnAspArgTyrGluThrAspIleArgTyrT 289682 : CGATCGTTCAGCAGCGATCGTCCGTCGAACGATCGTTACGAAACGGACATACGTTACA : 289739 24 : erLeuGlnMetCysGlnTrpThrLeuLysProIleGlyIleTrpProLeuIleTyrHi : 42 !!!!!:!!:!:|||!!.|||! !|||||||||||||||!!:!::|||!!!:!!!:! hrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrProPheValPheSe 289740 : CGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCTTTAG : 289796 43 : sArgValThrArgArgGluLysLeuIleSerValValLeuLeuIleLeuGlyPheSer : 61 !|||!.!!:!|||||||||::! ! ||||||:!!|||:!!:!::!! !!! !||| rArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLeuValCysCysSer 289797 : CCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCG : 289853 62 : LeuLeuPhePheIleLeuIlePro<->SerCysArgPheIlePhePheGluGlyHisI : 80 :!!||| ||||||:!!:!!||| ||| !!.! !!:!!||| !!!:..! !!! IleLeuGlnPheIleIleValProPheSerHisHisValLeuPheSerAspAsnAspM 289854 : ATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAACGACA : 289913 81 : leSerThrLysValArgLeuLeuGlyProValGlyTyrArgMetSerThrThrValLy : 99 !:!:!||| |||!:! !|||||||||:!! !!:! !!:!!!!!||| ! !!|| etAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuThrThrPhePheLy 289914 : TGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCTTCAA : 289970 100 : sTyrIleTyrLeuAlaLeuArgGlySerIlePheGlyArgCysIleGluHisValGlu : 118 |||| !|||!!!::!:!!!:!|||||| .!!|||||||||:!::!!|||:!!||| sTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysValLysHisIleGlu 289971 : GTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACATCGAG : 290027 119 : ArgAspTrpArgThrValGlnAspGlnArgHisArgSerIleMetLeuGluCysAlaG : 138 |||||||||!:!! !:!!!::|||:!! !|||||| !|||||||||..!! !!.! ArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMetLeuArgTyrValT 290028 : AGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATACGTGA : 290087 139 : lyLeuSerArgLysLeuIleThrMetCysAlaAlaPheLeuTyrThrGlyGlyLeuSe : 157 !:!!||||||!!.||||||! !:!!|||||| !|||||||||! !||||||||||| hrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyLeuSe 290088 : CGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTCTGTC : 290144 158 : rHisHisThrValHisAlaPhePheSerLysAspArgArgHisSerAsnValThrIle : 176 |:!!:!!|||||| !!!!.||||||||| ! !!! !:!!.!!|||||||||||| rTyrAsnThrValIleProLeuPheSerLysLysSerValAsnGlyAsnValThrIle 290145 : TTATAACACTGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGGTAACGTGACTATC : 290201 177 : ArgProLeuIleTyrProGlyTyrAspAlaPhePheAspThrGlnAlaSerProThrT : 196 |||||||||! !||||||||||||!!:! !|||||||||..!||| !||||||.!!| ArgProLeuThrTyrProGlyTyrGluGluPhePheAspValGlnLysSerProAlaT 290202 : AGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGT : 290261 197 : yrGluIleIleTyrCysMetGlnLeuLeuSerSerLeuIleValTyrThrIleGlyTh : 215 ||||||||:!!!:!||||||!!.! !:!!! ! !:!!|||..! !.!||| !! yrGluIleValPheCysMetHisCysValTyrValMetIleThrAlaAsnIleThrMe 290262 : ACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACATCACAAT : 290318 216 : rAlaThrTyrSerLeuLeuValIlePheValMetHisIleCysGlyGlnIleGlnIle : 234 !|||.!!||||||||| !..!||||||!.!! |||! !||||||||||||:!!||| tAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGlnIleLysIle 290319 : GGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATA : 290375 235 : GlnMetAlaArgLeuGluAsnLeu : 242 |||! !.!!|||||||||:!!||| GlnThrThrArgLeuGluAspLeu 290376 : CAAACGACGCGGCTGGAGGATCTG : 290401 vulgar: gi|383850524|ref|XP_003700845.1| 3 242 . KQ414889.1 289681 290401 + 609 M 66 198 G 0 3 M 173 519 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289682 290401 609 + . gene_id 1 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289682 290401 . + . KQ414889.1 exonerate:protein2genome:local exon 289682 290401 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289682 290401 609 + . alignment_id 1 ; Query gi|383850524|ref|XP_003700845.1| ; Align 289682 4 198 ; Align 289883 70 519 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 607 Query range: 10 -> 242 Target range: 299656 -> 300399 11 : LeuLysAsnSerTyrTyrSerAlaAspIleGlnTyrSerLeuGlnMetCysGlnTrpT : 30 |||!:!|||! !:!!|||..! !||||||!!.|||!!!|||||||||||||||||| LeuArgAsnTyrHisTyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpL 299657 : TTGAGGAATTACCATTACCAAAATGACATACATTACACGCTGCAAATGTGCCAATGGT : 299714 31 : hrLeuLysProIleGlyIleTrpProLeuIleTyrHisArgValThrArgArgGluLy : 49 !|||||||||||||||:!!|||! !|||:!! !!!!.||| !!:!!:!! !||| ! euLeuLysProIleGlyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHi 299715 : TGTTGAAACCTATCGGAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACA : 299771 50 : sLeuIleSerValValLeuLeuIleLeuGlyPheSerLeuLeuPhePheIleLeuIle : 68 |||:!!|||:!!||||||:!!! !:!! !!|||||| !||||||||||||:!!:!: sLeuValSerIleValLeuMetThrIleCysPheSerSerLeuPhePheIleValLeu 299772 : CCTCGTCTCGATCGTTCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTG : 299828 69 : ProSerCysArgPheIlePhePhe<->GluGlyHisIleSerThrLysValArgLeuL : 87 |||||| !!!.!!:!||||||||| ||| ! !||| !..!||||||!:!:!!! ProSerGlyHisTyrIlePhePheAlaGluLysSerIleHisValLysValLysValP 299829 : CCATCCGGTCATTACATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTAT : 299888 88 : euGlyProValGlyTyrArgMetSerThrThrValLysTyrIleTyrLeuAlaLeuAr : 106 !!||||||||||||!:! !!:!:|||:!!! !||||||||| !||||||..!|||!. heGlyProValGlyPheCysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAs 299889 : TCGGTCCGGTTGGTTTTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAA : 299945 107 : gGlySerIlePheGlyArgCysIleGluHisValGluArgAspTrpArgThrValGln : 125 !|||.!! |||! !|||||||||:!!||||||||||||||| ... nGlyGlyAlaPheGluArgCysIleGlnHisValGluArgAsp---UnkUnkUnkUnk 299946 : CGGTGGCGCGTTCGAACGATGCATCCAACACGTCGAGAGAGAC---NNNNNNNNNNNN : 299999 126 : AspGlnArg--HisArgSerIleMetLeuGluCysAlaGlyLeuSerArgLysLeuIl : 144 |||##||||||!!!|||||||||..!! !!.! !:!!||||||!!.|||! UnkUnkArg##HisArgThrIleMetLeuArgTyrValThrMetSerArgAsnLeuTh 300000 : NNNNTTCGAATCATCGTACGATCATGTTGAGATACGTGACTATGAGCAGAAATCTGAC : 300058 145 : eThrMetCysAlaAlaPheLeuTyrThrGlyGlyLeuSerHisHisThrValHisAla : 163 |||:!!||||||!.!|||||||||.!!||||||:!!|||:!!||||||||| ! rThrValCysAlaValPheLeuTyrAlaGlyGlyMetSerTyrHisThrValMetGln 300059 : GACCGTGTGCGCCGTGTTTCTTTACGCAGGTGGTATGTCGTATCACACGGTGATGCAG : 300115 164 : PhePheSerLysAspArg{Ar} >>>> Target Intron 1 >>>> {g}HisS : 172 |||!!.||||||||||||{||} 45 bp {|}.... PheLeuSerLysAspArg{Ar}-- +-{g}ArgG 300116 : TTCTTATCGAAGGACAGA{AG}ca.........................aa{A}AGGG : 300187 173 : erAsnValThrIleArgProLeuIleTyrProGlyTyrAspAlaPhePheAspThrGl : 191 .!||| !||| !!:!|||||| !||||||||||||||| !|||.!!|||||||| luAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGl 300188 : AGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACA : 300244 192 : nAlaSerProThrTyrGluIleIleTyrCysMetGlnLeuLeuSerSerLeuIleVal : 210 |.!!||||||||||||||||||:::::: ...... .!!:!!:!!:!!|||:!! nThrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMet 300245 : AACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATG : 300301 211 : TyrThrIleGlyThrAlaThrTyrSerLeuLeuValIlePheValMetHisIleCysG : 230 |||!.!:!: !||||||.!!||||||||| !!.!|||||||||! |||||||||| TyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysG 300302 : TACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTG : 300361 231 : lyGlnIleGlnIleGlnMetAlaArgLeuGluAsnLeu : 242 ||||||||||||||||||||||||||||||||:!!||| lyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeu 300362 : GACAGATTCAGATACAGATGGCGAGATTGGAGGATCTG : 300399 vulgar: gi|383850524|ref|XP_003700845.1| 10 242 . KQ414889.1 299656 300399 + 607 M 66 198 G 0 3 M 44 132 G 1 0 M 7 21 F 0 2 M 41 123 S 0 2 5 0 2 I 0 41 3 0 2 S 1 1 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299657 300399 607 + . gene_id 2 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 299657 300137 . + . KQ414889.1 exonerate:protein2genome:local exon 299657 300137 . + . insertions 3 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local splice5 300138 300139 . + . intron_id 1 ; splice_site "CA" KQ414889.1 exonerate:protein2genome:local intron 300138 300182 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300181 300182 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 300183 300399 . + . KQ414889.1 exonerate:protein2genome:local exon 300183 300399 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299657 300399 607 + . alignment_id 2 ; Query gi|383850524|ref|XP_003700845.1| ; Align 299657 11 198 ; Align 299858 77 132 ; Align 299990 122 21 ; Align 300013 129 123 ; Align 300184 171 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 440 Query range: 271 -> 414 Target range: 300605 -> 302166 272 : GluIleLeuLysPheSerGluLysValGlnLysAlaLeuGluGluIleCysPheThrA : 291 |||! !! !!:!|||:!!:!!!!.|||:!!:!!.!!|||...!!:.!!|||!!...!! GluAsnCysArgPheAlaLysAsnValGluGluThrLeuArgAspPheCysLeuValG 300606 : GAAAATTGCAGATTTGCAAAGAACGTTGAGGAAACTTTGCGTGACTTCTGCTTAGTGG : 300663 292 : laValValGluCysThrIleAsnMetCysLeuLeuGlnTyrTyrCysLeuLys >>> : 309 !:!! !!|||! !|||:!:! !:!!|||||||||:!!|||||||||||| ! luIlePheGluSerThrLeuIleLeuCysLeuLeuGluTyrTyrCysLeuVal++ 300664 : AAATCTTCGAGTCCACGCTGATTTTGTGTTTGCTCGAATACTACTGTTTGGTGgt... : 300719 310 : > Target Intron 1 >>>> SerTrpLysAlaSerAspThrValGlnIleValT : 320 970 bp ..!|||:!! !|||||||||:!! !!::!!| ++GluTrpGlnAsnSerAspThrIleAlaMetLeuT 300720 : ......................agGAATGGCAAAATAGCGACACGATCGCTATGTTGA : 301720 321 : hrTyrIleThrLeuLeuMetSerPheThrTyrAsnIlePheValPheCysTyrIleGl : 339 ||!:!.!!|||||||||! !|||||||||!:!|||||||||:!!|||||||||||||| hrPhePheThrLeuLeuThrSerPheThrPheAsnIlePheIlePheCysTyrIleGl 301721 : CATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGG : 301777 340 : yGluValLeuThrGluGln >>>> Target Intron 2 >>>> CysSerGlnI : 349 ||||:!!|||:!!|||||| 80 bp |||||||||| yGluIleLeuSerGluGln++ ++CysSerGlnI 301778 : CGAGATTCTTTCCGAACAGgt.........................agTGTAGCCAAA : 301887 350 : leGlyValAlaSerTyrAspIleAspTrpTyrAsnLeuProAlaLysAsnAlaHisAs : 368 ||||| !|||||||||!!:|||||||||||||||||||||||||||!..|||:!!|| leGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAs 301888 : TTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGA : 301944 369 : pLeuValLeuLeuAsnIleValSerGlnAsnProProLysLeuLeuAlaGlyArgIle : 387 ||||:!!||||||!:!:!::!!|||||| !!|||||||||||| !||||||!:!||| pLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGlyLysIle 301945 : TCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATA : 302001 388 : IleGluLeuSerLeuAsnThrPheThrAla >>>> Target Intron 3 >>>> : 398 |||!!:||||||||||||||||||!:!:!! 82 bp IleAspLeuSerLeuAsnThrPheSerSer++ + 302002 : ATCGACTTATCCTTGAATACATTCAGCTCTgt.........................a : 302114 399 : ValValLysThrSerValAlaTyrMetAsnLeuLeuArgThrValThrAsp : 414 ||||||||||||||||||!.!|||:!!|||||||||||||||||||||:!! +ValValLysThrSerValValTyrLeuAsnLeuLeuArgThrValThrAsn 302115 : gGTGGTGAAAACATCGGTGGTGTACTTGAATTTACTGCGAACAGTTACAAAC : 302166 vulgar: gi|383850524|ref|XP_003700845.1| 271 414 . KQ414889.1 300605 302166 + 440 M 37 111 5 0 2 I 0 966 3 0 2 M 37 111 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300606 302166 440 + . gene_id 3 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300606 300716 . + . KQ414889.1 exonerate:protein2genome:local exon 300606 300716 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300717 300718 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300717 301686 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301685 301686 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302166 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302166 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300606 302166 440 + . alignment_id 3 ; Query gi|383850524|ref|XP_003700845.1| ; Align 300606 272 111 ; Align 301687 309 111 ; Align 301878 346 156 ; Align 302116 398 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 365 Query range: 12 -> 242 Target range: 284496 -> 286204 13 : AsnSerTyrTyrSerAlaAspIleGlnTyrSerLeuGlnMetCysGlnTrpThrLeuL : 32 :!!||| !::..!.!!||| ..!||||||:!!|||||| !!::||| !|||| AspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuL 284497 : GATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCA : 284554 33 : ysProIleGlyIleTrpProLeuIleTyrHisArgValThrArgArgGluLysLeuIl : 51 |||||||||||:!!|||||||||! ! ! !!||||||! ! !||||||:!!! ysProIleGlyValTrpProLeuSerLeu---CysValThrThrLeuGluLysIleSe 284555 : AACCGATTGGCGTATGGCCTCTCAGTCTC---TGCGTGACCACCTTGGAAAAGATCAG : 284608 52 : eSerValValLeuLeuIleLeuGlyPheSerLeuLeuPhePheIleLeuIleProSer : 70 !|||||||||||| !:!!:!!.!!! !! !|||:!! !|||:!!|||:!!|||!!! rSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCys 284609 : TTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGC : 284665 71 : <-><->CysArgPheIlePhePheGluGlyHisIleSerThrLysValArgLeuLeuG : 88 |||! ! ! :!! ! ||| !!:!!..!||||||:!!!:!:!!:!!| AlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleG 284666 : GCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCG : 284725 89 : lyProValGlyTyrArgMetSerThrThrValLysTyrIleTyrLeuAlaLeuArgGl : 107 |||||:!!.!!!:! !!|||! !.!!.!!:!!|||||| ! !||| !! !||||| lyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGl 284726 : GTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGG : 284782 108 : ySerIlePheGlyArgCysIleGluHisValGluArgAsp{Tr} >>>> Target : 121 |.!!! .!!|||!:!|||:!::!! !!:!!... !|||{||} 101 yGlyLysIleGlyGlnCysValLysAspIleArgAlaAsp{Tr}++ 284783 : CGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGAC{TG}gt............ : 284828 122 : Intron 1 >>>> {p}ArgThrValGlnAspGlnArgHisArgSerIleMetLeuG : 135 2 bp {|}! !:!! !......:::......|||...|||||| !! +-{p}LeuSerHisSerGlnGluGluGluArgGluIleMetArgA 284829 : .............ac{G}CTTTCGCATAGtcaagaagaggagagagagatcaTGAGGG : 285878 136 : luCysAlaGlyLeuSerArgLysLeuIleThrMetCysAlaAlaPheLeuTyrThrGl : 154 !: !!||| !!:!!.!!|||...||| ! !.!.||||||!.!|||:!!|||:!!|| spSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGl 285879 : ACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGG : 285935 155 : yGlyLeuSerHisHisThrValHisAlaPhePheSer<->LysAspArgArgHisSer : 172 ||||!!!! !:!! !|||||| !!!!.! !!!! ::: ..!! ! !..! yGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIleAsp 285936 : AGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGAC : 285992 173 : AsnValThrIleArgProLeuIleTyrProGlyTyrAspAlaPhePheAspThrGlnA : 192 |||! !|||:!:||| !!! ! !:!||| !||| !!.!.!!.!!||| !!!::. AsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgT 285993 : AACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTA : 286052 193 : laSerProThrTyrGluIleIleTyrCysMetGlnLeuLeuSerSerLeuIleValTy : 211 !!||||||:!!!:!||||||:!: ! ! !||||||! !|||:!!:!!!!!:!!:!!|| hrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTy 286053 : CCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATA : 286109 212 : rThrIleGlyThrAlaThrTyrSerLeuLeuValIlePheValMetHisIleCysGly : 230 |:!!:!! !..!!.!.!!! !|||||| !!.!:!:||||||||||||:!!|||||| rSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGly 286110 : CTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGA : 286166 231 : GlnIleGlnIleGlnMetAlaArgLeuGluAsnLeu : 242 |||.!!::!|||! :!!.!!!:!|||!!:!!.||| GlnPheArgIleLeuValThrLysLeuAspLysLeu 286167 : CAATTTAGGATACTTGTGACAAAGCTGGATAAGCTC : 286204 vulgar: gi|383850524|ref|XP_003700845.1| 12 242 . KQ414889.1 284496 286204 + 365 M 29 87 G 1 0 M 28 84 G 0 6 M 50 150 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 45 135 G 0 3 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284497 286204 365 + . gene_id 4 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284497 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284497 284825 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286204 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286204 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284497 286204 365 + . alignment_id 4 ; Query gi|383850524|ref|XP_003700845.1| ; Align 284497 13 87 ; Align 284584 43 84 ; Align 284674 71 150 ; Align 285839 122 135 ; Align 285977 167 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 361 Query range: 12 -> 242 Target range: 278549 -> 279254 13 : AsnSerTyrTyrSerAlaAspIleGlnTyrSerLeuGlnMetCysGlnTrpThrLeuL : 32 :!!||| !::!:!.!!||| ..!||||||:!!|||||| !!::||| !|||| AspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuL 278550 : GATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCA : 278607 33 : ysProIleGlyIleTrpProLeuIleTyrHisArgValThrArgArgGluLysLeuIl : 51 |||||||||||:!!|||||||||! ! ! !!||||||! ! !||||||:!!! ysProIleGlyValTrpProLeuSerLeu---CysValThrThrLeuGluLysIleSe 278608 : AACCGATTGGCGTATGGCCTCTCAGTCTC---TGCGTGACCACCTTGGAAAAGATCAG : 278661 52 : eSerValValLeuLeuIleLeuGlyPheSerLeuLeuPhePheIleLeuIleProSer : 70 !|||||||||||| !:!!:!!.!!! !! !|||:!! !|||:!!|||:!!|||!!! rSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCys 278662 : TTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGC : 278718 71 : <-><->CysArgPheIlePhePheGluGlyHisIleSerThrLysValArgLeuLeuG : 88 |||! ! ! :!! ! ||| !!:!!..!||||||:!!!:!:!!:!!| AlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleG 278719 : GCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCG : 278778 89 : lyProValGlyTyrArgMetSerThrThrValLysTyrIleTyrLeuAlaLeuArgGl : 107 |||||:!!.!!!:! !!! !! !.!!|||:!!|||||| ! !||| !! !||||| lyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGl 278779 : GTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGG : 278835 108 : ySerIlePheGlyArgCysIleGluHisValGluArgAspTrpArg<-><-><->Thr : 123 |.!!! .!!|||!:!|||:!:.!. !!:!!...! !|||||| ! :!! yGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSer 278836 : CGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCG : 278892 124 : ValGlnAspGlnArgHisArgSerIleMetLeuGluCysAlaGlyLeuSerArgLysL : 143 !!::...:::......|||...|||||| !!!: !!||| !!:!!.!!|||...| TyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerL 278893 : TATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTT : 278952 144 : euIleThrMetCysAlaAlaPheLeuTyrThrGlyGlyLeuSerHisHisThrValHi : 162 || ! !.!. !!|||!.!|||:!!|||:!!||||||:!!! !:!! !.!!||| euAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMe 278953 : TGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGAT : 279009 163 : sAlaPhePheSer<->LysAspArgArgHisSerAsnValThrIleArgProLeuIle : 180 !!!!.|||:!! ::: ..!! ! !..!|||! !|||:!:||| !!! ! tProLeuPheAlaValArgThrGluIleIleAspAsnGluThrValArgSerGlnAla 279010 : GCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCG : 279066 181 : TyrProGlyTyrAspAlaPhePheAspThrGlnAlaSerProThrTyrGluIleIleT : 200 !:!||| !||| !!.!.!!.!!||| !!!::.!!||||||:!!!:!||||||:!: PheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValG 279067 : TTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGC : 279126 201 : yrCysMetGlnLeuLeuSerSerLeuIleValTyrThrIleGlyThrAlaThrTyrSe : 219 ! ! !||||||! !|||:!!:!!!!!:!!:!!|||:!!:!! !..!!.!.!!! !|| lnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSe 279127 : AATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAG : 279183 220 : rLeuLeuValIlePheValMetHisIleCysGlyGlnIleGlnIleGlnMetAlaArg : 238 ||||:!!!.!:!:||||||||||||:!!|||||||||.!!::!|||! :!!.!!!:! rLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLys 279184 : CTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAG : 279240 239 : LeuGluAsnLeu : 242 |||!!:!!.||| LeuAspLysLeu 279241 : CTGGATAAGCTC : 279254 vulgar: gi|383850524|ref|XP_003700845.1| 12 242 . KQ414889.1 278549 279254 + 361 M 29 87 G 1 0 M 28 84 G 0 6 M 52 156 G 0 9 M 44 132 G 0 3 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278550 279254 361 + . gene_id 5 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278550 279254 . + . KQ414889.1 exonerate:protein2genome:local exon 278550 279254 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278550 279254 361 + . alignment_id 5 ; Query gi|383850524|ref|XP_003700845.1| ; Align 278550 13 87 ; Align 278637 43 84 ; Align 278727 71 156 ; Align 278892 123 132 ; Align 279027 167 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 338 Query range: 18 -> 214 Target range: 294678 -> 295272 19 : AspIleGlnTyrSerLeuGlnMetCysGlnTrpThrLeuLysProIleGlyIleTrpP : 38 |||:!: ! !!||||||:!! |||!:! !! !|||||||||||||||:!!|||| AspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpP 294679 : GACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGC : 294736 39 : roLeuIleTyrHisArgValThrArgArgGluLysLeuIleSerValValLeuLeuIl : 57 ||||||||||| !!.!..!!:!!:!! !.!.|||:!!:!!|||:!!:!!|||:!! roLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAl 294737 : CACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGC : 294793 58 : eLeuGlyPheSerLeuLeuPhePheIleLeuIleProSerCysArgPhe<->IlePhe : 75 ! ! !! ! ! !:!!.!.|||:!!|||:!:|||!!! ! !||| :!!||| aTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCysValPhe 294794 : GTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTC : 294850 76 : PheGluGlyHisIleSerThrLysValArgLeuLeuGlyProValGlyTyrArgMetS : 95 !! ::::::... |||:!!!:!||||||||||||||| !||| !||| HisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetL 294851 : CACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGC : 294910 96 : erThrThrValLysTyrIleTyrLeuAlaLeuArgGlySerIlePheGlyArgCysIl : 114 !:!!! !:!!!:!|||! !! !|||!.!|||!:! ! !! ||| !!.!||||| euSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCysIl 294911 : TCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCAT : 294967 115 : eGluHisValGluArgAspTrpArgThrValGlnAspGlnArgHisArgSerIleMet : 133 |||| !!:!!|||!.!||||||!:! !:!!.!.:!!! !..!||||||:!!|||||| eGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIleMet 294968 : CGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATG : 295024 134 : LeuGluCysAlaGlyLeuSerArgLysLeuIleThrMetCysAlaAlaPheLeuTyrT : 153 :!!:!! !||| !:!!!!!!:!!:!:!!! !..! ! !.!! !.!.:!!|||! IleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleIleTyrS 295025 : ATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACA : 295084 154 : hrGlyGlyLeuSerHisHisThrValHisAlaPhePheSerLysAsp<->ArgArgHi : 171 :!..!!.!:!!|||:!!|||.!!:!! |||||||||... ..!!.! ! erSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGluAsnLy 295085 : GTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGAGAACAA : 295141 172 : sSerAsnValThrIleArgProLeuIleTyrProGlyTyrAspAlaPhePheAspThr : 190 !.!||| !||||||||| !!||| ! !|||||||||!!: !||| ! |||.!! sLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheValAspAla 295142 : GAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCT : 295198 191 : GlnAlaSerProThrTyrGluIleIleTyrCysMetGlnLeuLeuSerSerLeuIleV : 210 ! :!!||||||||||||||||||||| ! ! !!!:!!! !|||!!!.!!| TyrSerSerProThrTyrGluIleIleArgThrHisLeuPheValTyrSerPhePheV 295199 : TATTCCAGTCCTACCTACGAGATCATAAGAACTCATCTCTTTGTTTACTCGTTCTTCG : 295258 211 : alTyrThrIleGly : 214 || !!! !! !||| alAsnLysThrGly 295259 : TCAACAAAACTGGT : 295272 vulgar: gi|383850524|ref|XP_003700845.1| 18 214 . KQ414889.1 294678 295272 + 338 M 55 165 G 0 3 M 95 285 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294679 295272 338 + . gene_id 6 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294679 295272 . + . KQ414889.1 exonerate:protein2genome:local exon 294679 295272 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294679 295272 338 + . alignment_id 6 ; Query gi|383850524|ref|XP_003700845.1| ; Align 294679 19 165 ; Align 294847 74 285 ; Align 295135 169 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 336 Query range: 15 -> 252 Target range: 221360 -> 222077 16 : TyrSerAlaAspIleGlnTyrSerLeuGlnMetCysGlnTrpThrLeuLysProIleG : 35 |||!.!.!!:!!:!::!!! |||:!!|||:!! !!!::|||! !||||||||||||| TyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleG 221361 : TACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCG : 221418 36 : lyIleTrpProLeuIleTyrHisArgValThrArgArgGluLysLeuIleSerValVa : 54 ||:!!|||||| ! ! !:!! :!!:!!! ! !|||!:!! !:!!! ! !:! lyValTrpProAsnSerAlaAsn---IleSerThrValGluArgTyrLeuTyrTrpLe 221419 : GTGTTTGGCCAAATTCAGCCAAC---ATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 55 : lLeuLeuIleLeuGlyPheSerLeuLeuPhePheIleLeuIleProSerCysArgPhe : 73 !:!! !:!!:!! !!!:!||||||:!! |||:!!|||:!!|||!!! !!! !!:! uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 74 : IlePhePheGlu<->GlyHisIleSerThrLysValArgLeuLeuGlyProValGlyT : 92 :!:.!!.!!||| ! ! !!:!!! !!.!!:!:!!!:!||||||||||||:!!.!!! ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 93 : yrArgMetSerThrThrValLysTyrIleTyrLeuAlaLeuArgGlySerIlePheGl : 111 :! !!:!!! !.!! !:!!|||||| ! ||| !||| !! !!:! !.!! ! heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 112 : yArgCysIleGluHisValGluArgAspTrpArgThrValGlnAspGlnArgHisArg : 130 !..!|||||||||!.!:!!||| !!||||||!:!!.!:!! !!...!:! !!!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 131 : SerIleMetLeuGluCysAlaGlyLeuSerArgLysLeuIleThrMetCysAlaAlaP : 150 ..!||||||:!!||| !||| !!!!.!!|||::!||||||! !!!:|||.!! !| AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 151 : heLeuTyrThrGlyGlyLeuSerHisHisThrValHisAlaPhePhe<-><->SerLy : 167 ||:!!|||!:!||| ::: :::::: !!.! !!||| ! !.!! heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 168 : sAspArgArgHisSerAsnValThrIleArgProLeuIleTyrProGlyTyrAspAla : 186 ! !!:! !! |||||||||... |||:!!:!:!:!||| !! ! eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 187 : PhePheAspThrGlnAlaSerProThrTyrGluIleIleTyrCysMetGlnLeuLeuS : 206 .!! !!||||||!:! !||||||..! !!||||||:!:!:!! :!:|||:!!:!!: IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 207 : erSerLeuIleValTyrThrIleGlyThrAlaThrTyrSerLeuLeuValIlePheVa : 225 !!.!! !:!::!!:!!!:!||| !:!!|||.!!! !||||||:!!!.!!!:|||!. laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 226 : lMetHisIleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAsnLeuLysAsn : 244 !:!!||| !|||||||||!!:|||:!: !|||::! !!|||:!!:!!|||! ||| aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 245 : AlaArgLeuGluAsnLeuLysAsn : 252 !.!||| !!!:! ! !!!.||| GlyArgAlaAspMetCysAsnAsn 222052 : GGCCGGGCGGATATGTGTAACAAC : 222077 vulgar: gi|383850524|ref|XP_003700845.1| 15 252 . KQ414889.1 221360 222077 + 336 M 27 81 G 1 0 M 34 102 G 0 3 M 88 264 G 0 6 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221361 222077 336 + . gene_id 7 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221361 222077 . + . KQ414889.1 exonerate:protein2genome:local exon 221361 222077 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221361 222077 336 + . alignment_id 7 ; Query gi|383850524|ref|XP_003700845.1| ; Align 221361 16 81 ; Align 221442 44 102 ; Align 221547 78 264 ; Align 221817 166 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 325 Query range: 9 -> 252 Target range: 208176 -> 208911 10 : ValLeuLysAsnSerTyrTyrSerAlaAspIleGlnTyrSerLeuGlnMetCysGlnT : 29 :!!!!! |||!!! !!|||!.! !|||:!:...!:!!:!:!!!:::!! ! !| IlePheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValT 208177 : ATATTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGT : 208234 30 : rpThrLeuLysProIleGlyIleTrpProLeuIleTyrHisArgValThrArgArgGl : 48 ||||||||||| !|||||| !|||||| ! ! !!||| :!! !! !|| rpThrLeuLysIleIleGlySerTrpProArgSerIleAspArg---SerTrpLeuGl 208235 : GGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGT---TCCTGGTTAGA : 208288 49 : uLysLeuIleSerValValLeuLeuIleLeuGlyPheSerLeuLeuPhePheIleLeu : 67 |!!. ! !:!!:!!||| !:!!|||.!! !!!!|||||| !||||||:!! uAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleVal 208289 : GAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTG : 208345 68 : IleProSerCysArgPhe<->IlePhePheGluGlyHisIleSerThrLysValArgL : 86 ||||||!!! !!! !||| |||.!! ! ! ! ! !!.!!! ! !:!!:!!!:!: IleProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysI 208346 : ATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGA : 208405 87 : euLeuGlyProValGlyTyrArgMetSerThrThrValLysTyrIleTyrLeuAlaLe : 105 !!! !.!! !!:!!.!!!:! !|||! !.!! !..!||||||:!: !:!!.!!:! leCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrVa 208406 : TCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGT : 208462 106 : uArgGlySerIlePheGlyArgCysIleGluHisValGluArgAspTrpArgThrVal : 124 !|||! !.!! !.!. !!!:!|||:!!|||:!!|||||| !|||||||||!.!||| lArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnVal 208463 : CCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTG : 208519 125 : GlnAspGlnArgHisArgSerIleMetLeuGluCysAlaGlyLeuSerArgLysLeuI : 144 :!! !!:!!..! !!|||!.!|||||||||!!: !|||.!!!!!:!!|||||||||| GluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuI 208520 : GAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGA : 208579 145 : leThrMetCysAlaAlaPheLeuTyrThrGlyGlyLeuSerHisHisThrValHisAl : 163 ||..!!!:|||!.!||||||:!!||| !||| ::: :::::: !!.! ! leValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuPr 208580 : TCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCC : 208636 164 : aPhePheSerLysAsp<-><->ArgArgHisSerAsnValThrIleArgProLeuIle : 180 !.!! ! !! ! ! ..!..! !.!!|||:!!||| !||| !|||:!! oLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuVal 208637 : GCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTT : 208693 181 : TyrProGlyTyrAspAlaPhePheAspThrGlnAlaSerProThrTyrGluIleIleT : 200 ||||||! ! ! ! !.!!.!.|||..!!:! !||||||..! !!||||||.!!| TyrProValProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheT 208694 : TATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTT : 208753 201 : yrCysMetGlnLeuLeuSerSerLeuIleValTyrThrIleGlyThrAlaThrTyrSe : 219 || :!:||||||||||||.!!!!!:!!!.!:!!!.!||| !..!!.!.!!! !.! yrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGl 208754 : ATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGG : 208810 220 : rLeuLeuValIlePheValMetHisIleCysGlyGlnIleGlnIleGlnMetAlaArg : 238 !||| !!.!:!:.!!!.!|||||| |||||||||:!:|||||| !|||:!! !! yLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrp 208811 : TTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGG : 208867 239 : LeuGluAsnLeuLysAsnAlaArgLeuGluAsnLeuLysAsn : 252 :!!|||!!.||| :!!!.!||| !!!:.!. !|||||| MetGluLysLeuValAspGlyArgGluAspGluGluLysAsn 208868 : ATGGAGAAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAAT : 208911 vulgar: gi|383850524|ref|XP_003700845.1| 9 252 . KQ414889.1 208176 208911 + 325 M 34 102 G 1 0 M 29 87 G 0 3 M 95 285 G 0 6 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208177 208911 325 + . gene_id 8 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208177 208911 . + . KQ414889.1 exonerate:protein2genome:local exon 208177 208911 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208177 208911 325 + . alignment_id 8 ; Query gi|383850524|ref|XP_003700845.1| ; Align 208177 10 102 ; Align 208279 45 87 ; Align 208369 74 285 ; Align 208660 169 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 321 Query range: 15 -> 248 Target range: 217156 -> 217861 16 : TyrSerAlaAspIleGlnTyrSerLeuGlnMetCysGlnTrpThrLeuLysProIleG : 35 |||... :::|||... |||:!!||| ! !!::||| !|||||||||!!:| TyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetG 217157 : tacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGG : 217214 36 : lyIleTrpProLeuIleTyrHisArgValThrArgArgGluLysLeuIleSerValVa : 54 ||:!!|||||| ! !! !.!! !..!|||||| !..!|||:!!:!!! ! !:! lyLeuTrpPro---AsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLe 217215 : GTCTTTGGCCA---AACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACT : 217268 55 : lLeuLeuIleLeuGlyPheSerLeuLeuPhePheIleLeuIleProSerCysArgPhe : 73 !:!! ! !||| !!!:!.!!|||:!! !|||:!!!!!:!!|||!!!! !! !!:! uIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyr 217269 : GATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTAC : 217325 74 : IlePhePheGlu<->GlyHisIleSerThrLysValArgLeuLeuGlyProValGlyT : 92 :!:|||.!!||| ! ! !!:!!! ! !|||:!!!:!|||!!!||||||:!! !! ValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIleP 217326 : GTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCT : 217385 93 : yrArgMetSerThrThrValLysTyrIleTyrLeuAlaLeuArgGlySerIlePheGl : 111 :! !!:!!! !.!! !||||||||| !! !||| !:!!!.! !:!! !.!! ! heCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleAr 217386 : TCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCG : 217442 112 : yArgCysIleGluHisValGluArgAspTrpArgThrValGlnAspGlnArgHisArg : 130 !..!|||:!:..!...:!!|||||||||||||||!.!|||::! !:!!!:! !!||| gGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArg 217443 : CGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGG : 217499 131 : SerIleMetLeuGluCysAlaGlyLeuSerArgLysLeuIleThrMetCysAlaAlaP : 150 ..! |||:!!! ! !|||..!!!!.!!|||||||||:!! !:!:|||.!! !| GluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPheP 217500 : GAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCT : 217559 151 : heLeuTyrThrGlyGlyLeuSerHisHisThrValHisAlaPhePheSerLysAsp<- : 169 ||:!!|||!:!||| ::: :::::: !!.! !!.!! ! ! ! heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIl 217560 : TCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAAT : 217616 170 : ><->ArgArgHisSerAsnValThrIleArgProLeuIleTyrProGlyTyrAspAla : 186 !..!:!!.!!|||:!!|||.!!! !||||||:!:!:!||| ! ! ! eLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyr 217617 : TCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTAT : 217673 187 : PhePheAspThrGlnAlaSerProThrTyrGluIleIleTyrCysMetGlnLeuLeuS : 206 .!!.!!||||||!:: !!!!|||||| !!||||||:!:!:!! !:!:||||||:!!: IleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleA 217674 : ATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCG : 217733 207 : erSerLeuIleValTyrThrIleGlyThrAlaThrTyrSerLeuLeuValIlePheVa : 225 !!.!! !:!::!!:!! !||| !:!!|||.!!! !|||||| !!.! !|||!. laGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAl 217734 : CTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGC : 217790 226 : lMetHisIleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAsnLeuLysAsn : 244 !:!:||| !||||||||||||:!!:!: !||| ! !!|||:!!:!!|||! :!! aValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAsp 217791 : GGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGAC : 217847 245 : AlaArgLeuGlu : 248 !.!||| !!!: GlyArgAlaAsp 217848 : GGTAGAGCGGAT : 217861 vulgar: gi|383850524|ref|XP_003700845.1| 15 248 . KQ414889.1 217156 217861 + 321 M 23 69 G 1 0 M 38 114 G 0 3 M 91 273 G 0 6 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217157 217861 321 + . gene_id 9 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217157 217861 . + . KQ414889.1 exonerate:protein2genome:local exon 217157 217861 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217157 217861 321 + . alignment_id 9 ; Query gi|383850524|ref|XP_003700845.1| ; Align 217157 16 69 ; Align 217226 40 114 ; Align 217343 78 273 ; Align 217622 169 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 300 Query range: 284 -> 413 Target range: 286806 -> 287338 285 : GluGluIleCysPheThrAlaValValGluCysThrIleAsnMetCysLeuLeuGlnT : 304 !!:!!::!:|||!:! ! !..!||| !...! !||| .!. !:!!! !..!! AspAspLeuCysTyrTyrHisThrValMetAlaIleIleAlaPheValMetTyrSerL 286807 : GACGACTTGTGTTATTACCATACTGTAATGGCAATAATTGCATTCGTCATGTACTCGT : 286864 305 : yrTyrCysLeuLysSerTrpLysAlaSerAspThrValGlnIleValThrTyrIleTh : 323 ! !!!! !!..!|||:!! !|||!!:|||:!! !! :!!|||||| !|| euSerValPhe***GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysTh 286865 : TGTCAGTTTTCTAGGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCAC : 286921 324 : rLeuLeuMetSerPheThrTyrAsnIlePheValPheCysTyrIleGlyGluValLeu : 342 |||||||:!:|||||||||!:!|||:!!|||:!!.!!|||||||||||||||:!!||| rLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeu 286922 : GTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTC : 286978 343 : ThrGluGln >>>> Target Intron 1 >>>> CysSerGlnIleGlyValAl : 352 :!!|||||| 74 bp |||! !:!!:!!|||:!!:! SerGluGln++ ++CysLeuLysValGlyLeuSe 286979 : TCCGAACaggt.........................agtGCTTAAAAGTCGGCTTGTC : 287082 353 : aSerTyrAspIleAspTrpTyrAsnLeuProAlaLysAsnAlaHisAspLeuValLeu : 371 !!!!||| ||||||||||||..!||||||!.!|||!..|||!!.! !|||:!!||| rThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeu 287083 : AACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTG : 287139 372 : LeuAsnIleValSerGlnAsnProProLysLeuLeuAlaGlyArgIleIleGluLeuS : 391 :!! ! !||||||.!.::! !! !|||||| !||||||!:!||||||!!:|||| IlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuS 287140 : ATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCT : 287199 392 : erLeuAsnThrPheThrAla >>>> Target Intron 2 >>>> ValValLys : 400 |||||!:!!:!||| !::! 71 bp |||:!!||| erLeuSerSerPheCysSer++ ++ValLeuLys 287200 : CTTTAAGCAGCTTCTGCAGCgt.........................agGTGTTGAAA : 287297 401 : ThrSerValAlaTyrMetAsnLeuLeuArgThrValThr : 413 :!!:!! !!||||||:!!!:!||||||||||||:!!||| SerAlaPheAlaTyrLeuSerLeuLeuArgThrLeuThr 287298 : TCGGCATTCGCATATCTGAGCTTATTACGTACGCTAACC : 287338 vulgar: gi|383850524|ref|XP_003700845.1| 284 413 . KQ414889.1 286806 287338 + 300 M 61 183 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286807 287338 300 + . gene_id 10 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286807 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286807 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287220 287221 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 287220 287290 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 287289 287290 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 287291 287338 . + . KQ414889.1 exonerate:protein2genome:local exon 287291 287338 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286807 287338 300 + . alignment_id 10 ; Query gi|383850524|ref|XP_003700845.1| ; Align 286807 285 183 ; Align 287064 346 156 ; Align 287291 398 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 294 Query range: 284 -> 413 Target range: 280019 -> 280551 285 : GluGluIleCysPheThrAlaValValGluCysThrIleAsnMetCysLeuLeuGlnT : 304 !!:!!::!!|||!:! ! !:!!||| !...! !||| .!. !:!!! !..!! AspAspLeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerL 280020 : GACGACTTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGT : 280077 305 : yrTyrCysLeuLysSerTrpLysAlaSerAspThrValGlnIleValThrTyrIleTh : 323 ! !!!! !!..!|||:!! !!:!|||.!!:!! !! !!||||||:!!! euSerValPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMe 280078 : TGTCAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAAT : 280134 324 : rLeuLeuMetSerPheThrTyrAsnIlePheValPheCysTyrIleGlyGluValLeu : 342 !!!!|||!!:|||!!.|||!:!|||:!!|||:!!.!!|||||||||||||||:!!||| tPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeu 280135 : GTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTC : 280191 343 : ThrGluGln >>>> Target Intron 1 >>>> CysSerGlnIleGlyValAl : 352 :!!|||||| 74 bp |||! !:!!:!!||||||:! SerGluGln++ ++CysLeuLysValGlyValSe 280192 : TCCGAACaggt.........................agTGCTTAAAAGTCGGCGTGTC : 280295 353 : aSerTyrAspIleAspTrpTyrAsnLeuProAlaLysAsnAlaHisAspLeuValLeu : 371 !!!!||| ||||||||||||..!||||||!.!|||!!.|||!!.! !|||:!!||| rThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeu 280296 : AACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTG : 280352 372 : LeuAsnIleValSerGlnAsnProProLysLeuLeuAlaGlyArgIleIleGluLeuS : 391 :!! ! !||||||.!.::! !! !|||||| !||||||!:!||||||!!:|||| IlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuS 280353 : ATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCT : 280412 392 : erLeuAsnThrPheThrAla >>>> Target Intron 2 >>>> ValValLys : 400 |||||!:!!:!||| !::! 71 bp |||:!!||| erLeuSerSerPheCysSer++ ++ValLeuLys 280413 : CTTTAAGCAGCTTCTGCAGCgt.........................agGTGTTAAAA : 280510 401 : ThrSerValAlaTyrMetAsnLeuLeuArgThrValThr : 413 |||:!! !!||||||:!!!:!||||||||||||:!!||| ThrAlaPheAlaTyrLeuSerLeuLeuArgThrLeuThr 280511 : ACGGCATTCGCATATCTGAGCTTATTACGTACGCTTACC : 280551 vulgar: gi|383850524|ref|XP_003700845.1| 284 413 . KQ414889.1 280019 280551 + 294 M 61 183 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280020 280551 294 + . gene_id 11 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280020 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280020 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280551 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280020 280551 294 + . alignment_id 11 ; Query gi|383850524|ref|XP_003700845.1| ; Align 280020 285 183 ; Align 280277 346 156 ; Align 280504 398 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 285 Query range: 20 -> 252 Target range: 274380 -> 275082 21 : GlnTyrSerLeuGlnMetCysGlnTrpThrLeuLysProIleGlyIleTrpProLeuI : 40 .!.||||||||||||:!! !!:!||| !||||||||||||||| ||||||||| AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuA 274381 : GACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAG : 274438 41 : leTyrHisArgValThrArgArgGluLysLeuIleSerValValLeuLeuIleLeuGl : 59 ! ! !..!|||!:! !|||::!:!!:!!||| !:::|||:::...||| la---SerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCy 274439 : CC---TCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttg : 274492 60 : yPheSerLeuLeuPhePheIleLeuIleProSerCys<->ArgPheIlePhePheGlu : 77 ::!!!!!!!:!!.!!! !! !:!!||||||||| !.!.!!|||.!. ! !!: sTyrCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAsp 274493 : ctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGAT : 274549 78 : GlyHisIleSerThrLysValArgLeuLeuGlyProValGlyTyrArgMetSerThrT : 97 ! ! !:!! ! !|||:!!!:!||||||||||||:!!|||:!! !!.!.! ! ! GluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyG 274550 : GAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAG : 274609 98 : hrValLysTyrIleTyrLeuAlaLeuArgGlySerIlePheGlyArgCysIleGluHi : 116 !:!!!!.|||! ! ||| !||||||.!!!.! .!. !! !!|||:!:||||| lyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHi 274610 : GAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCA : 274666 117 : sValGluArgAspTrpArgThrValGlnAspGlnArgHisArgSerIleMetLeuGlu : 135 |:!!:!!! !|||||||||! !||| ! !..! !!!:!..!:!:||||||:!! sMetGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLys 274667 : CATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAG : 274723 136 : CysAlaGlyLeuSerArgLysLeuIleThrMetCysAlaAlaPheLeuTyrThrGlyG : 155 !||| !:!!.!!||| ! :!! ! !.!.||||||||||||:!! ! !|||! AsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyV 274724 : AACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTG : 274783 156 : lyLeuSerHisHisThrValHisAlaPhePheSerLysAspArgArgHisSerAsnVa : 174 !|||!!!:!! !..!:!! |||||| !! !:!! ! !!:! .!!|||! alLeuCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGl 274784 : TTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGA : 274840 175 : l<-><->ThrIleArgProLeuIleTyrProGlyTyrAspAlaPhePheAspThrGln : 191 ! |||:!:!.! !||| ! ! !!.!||| ! !.!! !!! ..!.!. uThrArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAsp 274841 : GACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGAC : 274897 192 : AlaSerProThrTyrGluIleIleTyrCysMetGlnLeuLeuSerSerLeuIleValT : 211 .!!||||||||| !!||||||:!! !..! !|||!!!:!!|||.!!!!!|||||| ThrSerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValA 274898 : ACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGA : 274957 212 : yrThrIleGlyThrAlaThrTyrSerLeuLeuValIlePheValMetHisIleCysGl : 230 !!:!!! !!.!..!!.!.!!!:!|||||| !!.!:!:|||!.! ||| !! !|| snSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGl 274958 : ATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGG : 275014 231 : yGlnIleGlnIleGlnMetAlaArgLeuGluAsnLeuLysAsnAlaArgLeuGluAsn : 249 ||||:!:...:!:! !||| ! !!:!! .!.!!! !||| ! ! !!!:... yGlnLeuSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGln 275015 : CCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcag : 275071 250 : LeuLysAsn : 252 |||||| AsnLysAsn 275072 : aataaaaat : 275082 vulgar: gi|383850524|ref|XP_003700845.1| 20 252 . KQ414889.1 274380 275082 + 285 M 20 60 G 1 0 M 30 90 G 0 3 M 103 309 G 0 6 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274381 275082 285 + . gene_id 12 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274381 275082 . + . KQ414889.1 exonerate:protein2genome:local exon 274381 275082 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 274381 275082 285 + . alignment_id 12 ; Query gi|383850524|ref|XP_003700845.1| ; Align 274381 21 60 ; Align 274441 42 90 ; Align 274534 72 309 ; Align 274849 175 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 273 Query range: 20 -> 244 Target range: 256649 -> 257327 21 : GlnTyrSerLeuGlnMetCysGlnTrpThrLeuLysProIleGlyIleTrpProLeuI : 40 .!.||||||||||||:!! !!:!||| !||||||||||||||| !|||||| AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpPro---P 256650 : GATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCA---C : 256704 41 : leTyrHisArgValThrArgArgGluLysLeuIleSerValValLeuLeuIleLeuGl : 59 !! !..!|||! !! !|||::! !:!!|||:!!|||||| !|||:!! ! roSerSerSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCy 256705 : CCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTG : 256761 60 : yPheSerLeuLeuPhePheIleLeuIleProSerCysArgPheIlePhePhe<->Glu : 77 !!:!.!!! !:!!!!.|||! !|||||||||!!!! ! ! !:!!|||.!! !!: sTyrGlySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAsp 256762 : CTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGAC : 256818 78 : GlyHisIleSerThrLysValArgLeuLeuGlyProValGlyTyrArgMetSerThrT : 97 ! ! !.!!! ||||||::: ...||||||:!!.!!:!! !!!!:! !!:! AspSerPheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerC 256819 : GACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCT : 256878 98 : hrValLysTyrIleTyrLeuAlaLeuArgGlySerIlePheGlyArgCysIleGluHi : 116 !!.!!!.|||! ! ||| !|||!:!|||!.! !.!. !! !|||:!!||||| ysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHi 256879 : GTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCA : 256935 117 : sValGluArgAspTrpArgThrValGlnAspGlnArgHisArgSerIleMetLeuGlu : 135 |:!!|||! !|||||||||! !|||::! :!!!:! !!!:!..!:!:|||:!!:!! sIleGluThrAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLys 256936 : TATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAG : 256992 136 : CysAlaGlyLeuSerArgLysLeuIleThrMetCysAlaAlaPheLeuTyrThrGlyG : 155 !||| !!!!!.!!||| ! :!! !|||.!.|||||||||.!!:!! ! !:!||| AsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyV 256993 : AACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCg : 257052 156 : lyLeuSerHisHisThrValHisAlaPhePheSerLysAspArgArgHisSerAsnVa : 174 ... ..! ! |||.!. !!!!:!! ! !!.! .!!|||! alPheCysPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGl 257053 : ttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGA : 257109 175 : lThr<-><->IleArgProLeuIleTyrProGlyTyrAspAlaPhePheAspThrGln : 191 !||| :!:||| !||| ! ! !!! !||| ! !.!.!!.:!!..!.!. uThrThrIleValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAsp 257110 : AACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGAT : 257166 192 : AlaSerProThrTyrGluIleIleTyrCysMetGlnLeuLeuSerSerLeuIleValT : 211 !||||||||| !!||||||:!: !! !|||||| !! !||||||:!!|||!.! GlnSerProThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaT 257167 : CAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGA : 257226 212 : yrThrIleGlyThrAlaThrTyrSerLeuLeuValIlePheValMetHisIleCysGl : 230 !|||! ! !..!::!! !!:!|||||| !!.!:!!|||!.!! ||| ! !|| hrThrSerThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGl 257227 : CTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGG : 257283 231 : yGlnIleGlnIleGlnMetAlaArgLeuGluAsnLeuLysAsn : 244 ||||:!: :!:! |||:!! !!:!! !.!.!!! !||| yGlnLeuThrValLeuMetSerTrpIleThrGluPheValAsn 257284 : TCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAAT : 257327 vulgar: gi|383850524|ref|XP_003700845.1| 20 244 . KQ414889.1 256649 257327 + 273 M 18 54 G 1 0 M 37 111 G 0 3 M 99 297 G 0 6 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256650 257327 273 + . gene_id 13 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256650 257327 . + . KQ414889.1 exonerate:protein2genome:local exon 256650 257327 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 256650 257327 273 + . alignment_id 13 ; Query gi|383850524|ref|XP_003700845.1| ; Align 256650 21 54 ; Align 256704 40 111 ; Align 256818 77 297 ; Align 257121 176 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 273 Query range: 9 -> 236 Target range: 259736 -> 260423 10 : ValLeuLysAsnSerTyrTyrSerAlaAspIleGlnTyrSerLeuGlnMetCysGlnT : 29 |||!!! !.!.!!! !!:!!!!::! !!! !.!.||||||||||||.!. !!:!| ValPheValGluThrSerPheThrSerHisSerAspTyrSerLeuGlnPheAsnArgT 259737 : GTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCCAATTTAATCGAT : 259794 30 : rpThrLeuLysProIleGlyIleTrpProLeuIleTyrHisArgValThrArgArgGl : 48 || !||||||||||||||| !|||||| !! ! !..!||||||! !|| rpPheLeuLysProIleGlyAlaTrpPro---ProSerSerSerThrThrArgLeuGl 259795 : GGTTCCTGAAACCGATAGGCGCTTGGCCA---CCTTCATCCTCCACGACCAGACTCGA : 259848 49 : uLysLeuIleSerValValLeuLeuIleLeuGlyPheSerLeuLeuPhePheIleLeu : 67 ||||:!!|||||||||:!!|||:!!.!!:!! !!!:!||| !:!!.!. !!! !||| uLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIleLeuValThrLeu 259849 : GAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATACTGGTCACCCTG : 259905 68 : IleProSerCysArgPheIlePhePheGluGlyHis<->IleSerThrLysValArgL : 86 ||||||!!! ! ! !!!:.!..!!||| !.!. :!:! !! !|||..!!:!: IleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrMetLysThrLysV 259906 : ATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGAAGG : 259965 87 : euLeuGlyProValGlyTyrArgMetSerThrThrValLysTyrIleTyrLeuAlaLe : 105 !!|||||||||:!! !:!! !!.!. ! ! !:!!!!.|||! ! ||| !|| alLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrThrThrLeuLeuLe 259966 : TGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTGTT : 260022 106 : uArgGlySerIlePheGlyArgCysIleGluHisValGluArgAspTrpArgThrVal : 124 |||||||!!! !.!. !!!!|||:!:||||||||||||!.!|||||||||! !:!! uArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAspTrpArgIleIle 260023 : GAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGAATTATA : 260079 125 : GlnAspGlnArgHisArgSerIleMetLeuGluCysAlaGlyLeuSerArgLysLeuI : 144 ! :!!!:! !!!:!!:!:!:||||||..!! !||| !!!!.!!||| ! :!! ThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgTyrValA 260080 : ACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGATACGTCG : 260139 145 : leThrMetCysAlaAlaPheLeuTyrThrGlyGlyLeuSerHisHisThrValHisAl : 163 !.!! ||||||||||||:!! ! !|||! !|||!!! ! ! !||| !. laAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCysLeuValThrVa 260140 : CTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTCACGGT : 260196 164 : aPhePheSerLysAspArgArgHisSerAsnValThr<-><->IleArgProLeuIle : 180 !!!. !!!!:!!! ! !!:! .!!|||! !||| :!!!.!! !||| lLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleValHisLeuLeuPro 260197 : GTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTGCCG : 260253 181 : TyrProGlyTyrAspAlaPhePheAspThrGlnAlaSerProThrTyrGluIleIleT : 200 ! ! !!! !||| ! ! !.!..!.:!!..!.!.! !||||||! ! !!||||||:!! CysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetAsnGluIleValL 260254 : TGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGATTGTTC : 260313 201 : yrCysMetGlnLeuLeuSerSerLeuIleValTyrThrIleGlyThrAlaThrTyrSe : 219 ! !:!!|||!!!:!!|||.!!!!!|||||| !!:!!! ! !..!!.!! !!:!|| euValValGlnPheValSerGlyPheIleValAsnSerSerThrValGlyIlePheSe 260314 : TCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTTCAG : 260370 220 : rLeuLeuValIlePheValMetHisIleCysGlyGlnIleGlnIleGlnMet : 236 |||| !!.!:!!.!...! ||| |||||||||:!:.!.:!:! ||| rLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMet 260371 : TCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATG : 260423 vulgar: gi|383850524|ref|XP_003700845.1| 9 236 . KQ414889.1 259736 260423 + 273 M 29 87 G 1 0 M 40 120 G 0 3 M 96 288 G 0 6 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259737 260423 273 + . gene_id 14 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259737 260423 . + . KQ414889.1 exonerate:protein2genome:local exon 259737 260423 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 259737 260423 273 + . alignment_id 14 ; Query gi|383850524|ref|XP_003700845.1| ; Align 259737 10 87 ; Align 259824 40 120 ; Align 259947 80 288 ; Align 260241 176 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 248 Query range: 120 -> 246 Target range: 304425 -> 304806 121 : TrpArgThrValGlnAspGlnArgHisArgSerIleMetLeuGluCysAlaGlyLeuS : 140 !::..! !|||:!!..!! ||| !!|||..!!!:||||||:!!! !!.! !:!!. TyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetG 304426 : TATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGG : 304483 141 : erArgLysLeuIleThrMetCysAlaAlaPheLeuTyrThrGlyGlyLeuSerHisHi : 159 !!|||!!.|||! ! !!!:|||||| !|||:!!|||||||||||| !! !:!!|| lyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHi 304484 : GTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCA : 304540 160 : sThrValHisAlaPhePheSerLysAspArg<->ArgHisSerAsnValThrIleArg : 177 ||||||| !||| !!! ! ! !.!.! !||| !||||||!:! sThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgThrIleLys 304541 : CACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAA : 304597 178 : ProLeuIleTyrProGlyTyrAspAlaPhePheAspThrGlnAlaSerProThrTyrG : 197 ||||||:!!|||||| !|||..!|||!!.||||||..!|||.!!||||||! !|||| ProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIleTyrG 304598 : CCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACG : 304657 198 : luIleIleTyrCysMetGlnLeuLeuSerSerLeuIleValTyrThrIleGlyThrAl : 216 ||:!::!!|||! !:!:!!.! !:!!!!!.!!! !:!!:!!|||:!!||| !.!!!. luLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThrAlaGl 304658 : AATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGG : 304714 217 : aThrTyrSerLeuLeuValIlePheValMetHisIleCysGlyGlnIleGlnIleGln : 235 !.!!! !.!!||| !!.!:!!|||!.!! ||| !||||||||||||.!.||| yAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleVal 304715 : TGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTT : 304771 236 : MetAlaArgLeuGluAsnLeuLysAsnAlaArg : 246 |||:!!||||||! :!!||| |||::!!:! MetSerArgLeuGlyAspLeuValAsnSerLys 304772 : ATGTCTCGATTGGGTGATCTTGTCAACAGCAAA : 304806 vulgar: gi|383850524|ref|XP_003700845.1| 120 246 . KQ414889.1 304425 304806 + 248 M 49 147 G 0 3 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304426 304806 248 + . gene_id 15 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304426 304806 . + . KQ414889.1 exonerate:protein2genome:local exon 304426 304806 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304426 304806 248 + . alignment_id 15 ; Query gi|383850524|ref|XP_003700845.1| ; Align 304426 121 147 ; Align 304576 170 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 241 Query range: 308 -> 412 Target range: 291368 -> 292593 309 : SerTrpLysAlaSerAspThrValGlnIleValThrTyrIleThrLeuLeuMetSerP : 328 ..!|||:!!::!||||||:!!:!! !|||:!!||||||:!!|||||||||! |||| GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 329 : heThrTyrAsnIlePheValPheCysTyrIleGlyGluValLeuThr<->Glu >>> : 345 |||||!:!||||||.!.:!!|||||||||:!!||||||:!!||| ! :!! heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln++ 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAGgt... : 291482 346 : > Target Intron 1 >>>> GlnCysSerGlnIleGlyValAlaSerTyrAspI : 356 910 bp ||| !!|||:!!|||!.! !||||||||||||! +-GlnGlySerGluIleAlaHisAlaSerTyrAspT 291483 : ......................acCAGGGTAGTGAAATCGCGCACGCTTCCTACGATA : 292423 357 : leAspTrpTyrAsnLeuProAlaLysAsnAlaHisAspLeuValLeuLeuAsnIleVa : 375 !!!:||||||||||||||| !::!!!.|||!.!|||:!!||||||:!! ! !:! hrGluTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIl 292424 : CAGAATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCAT : 292480 376 : lSerGlnAsnProProLysLeuLeuAlaGlyArgIleIleGluLeuSerLeuAsnThr : 394 !!!!:!!:!!||| !|||||| !||||||!:!|||.!!! ||||||||||||||| eThrLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThr 292481 : AACGAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACT : 292537 395 : PheThrAlaValValLysThrSerValAlaTyrMetAsnLeuLeuArgThrVal : 412 ||| !|||||| !:!!:!!!.!:!!!.!! !!::!!! ! !|||! !||| PheGlyAlaValArgGluSerLysLeuValLeuIleHis***GluArgIleVal 292538 : TTTGGCGCTGTACGTGAATCAAAACTAGTCTTGATACACTAAGAACGTATAGTT : 292593 vulgar: gi|383850524|ref|XP_003700845.1| 308 412 . KQ414889.1 291368 292593 + 241 M 35 105 G 0 3 M 1 3 5 0 2 I 0 906 3 0 2 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 292593 241 + . gene_id 16 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292389 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 292388 292389 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 292390 292593 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292593 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 292593 241 + . alignment_id 16 ; Query gi|383850524|ref|XP_003700845.1| ; Align 291369 309 105 ; Align 291477 344 3 ; Align 292390 345 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 233 Query range: 18 -> 242 Target range: 204227 -> 204899 19 : AspIleGlnTyrSerLeuGlnMetCysGlnTrpThrLeuLysProIleGlyIleTrpP : 38 |||:!:::!|||:!! !!::.!. :!! !! !||| ! !:!!||| |||| AspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaTrpP 204228 : GACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGTGGC : 204285 39 : roLeuIleTyrHisArgValThrArgArgGluLysLeuIleSerValValLeuLeuIl : 57 ||:!! ! :!! ! :!!! ! ! !!:!|||:!! !! !:!! !! !:! roIleProValAsnSer---SerProPheThrArgLeuValArgArgIleGluHisVa 204286 : CGATTCCAGTGAACTCC---TCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGT : 204339 58 : eLeuGlyPheSerLeuLeuPhePheIleLeuIleProSerCysArgPheIlePhePhe : 76 !:!! !::: |||...|||...:!::!!:!!|||.!! ! !!:!:!:|||.!. lValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheLeu 204340 : AGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTG : 204396 77 : <->GluGlyHisIleSerThrLysValArgLeuLeuGlyProValGlyTyrArgMetS : 95 ||| !:!! !!.!! !::::!!!:!:!!|||||||||:!!! ! !! !!! ! LysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSerI 204397 : AAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCA : 204456 96 : erThrThrValLysTyrIleTyrLeuAlaLeuArgGlySerIlePheGlyArgCysIl : 114 ! ! ! !!|||||| ! !:!! !! !||| !..!! !.!! !!:! !!:! leGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSerLe 204457 : TACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGTTT : 204513 115 : eGluHisValGluArgAspTrpArgThrValGlnAspGlnArgHisArgSerIleMet : 133 :.!. !:!!..!|||||||||! ! !!.! !|||:!! :!!|||! !|||.!. uAsnThrIleArgArgAspTrpIleGluAlaThrAspGlu---AsnArgLeuIlePhe 204514 : GAACACCATCAGACGCGACTGGATAGAGGCTACGGATGAA---AATCGGTTGATTTTC : 204567 134 : LeuGluCysAlaGlyLeuSerArgLysLeuIleThrMetCysAlaAlaPheLeuTyrT : 153 ! !..! ||| !:!!.!!|||!:!:!!:!: !!!:...|||||| !:!!||| ArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetTyrG 204568 : CGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGTACG : 204627 154 : hrGlyGlyLeuSerHisHisThrValHisAlaPhePhe<->SerLysAspArgArgHi : 171 !|||||||||!!!:!!...|||:!!! ! !!!!.!!. .!!! ! ! !! !! lyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleValThrPr 204628 : GCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTAACACC : 204684 172 : sSerAsnValThrIleArgProLeuIleTyrProGlyTyrAspAlaPhePheAspThr : 190 !..!||||||||||||||||||||| ! !|||! !||| ...||||||::: ! oAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePheAsnGlu 204685 : TGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaacGAG : 204741 191 : GlnAlaSerProThrTyrGluIleIleTyrCysMetGlnLeuLeuSerSerLeuIleV : 210 ||| !||||||!.!|||||||||:!!!:! :!!|||:!!:!!:!!.!!!!!:!!. GlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheValT 204742 : CAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTGTTA : 204801 211 : alTyrThrIleGlyThrAlaThrTyrSerLeuLeuValIlePheValMetHisIleCy : 229 .!|||.!!:!! !!:!!.!|||! !.!!:!!! !!.!:!:||||||:!:||| || hrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAlaCy 204802 : CTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGCGTG : 204858 230 : sGlyGlnIleGlnIleGlnMetAlaArgLeuGluAsnLeu : 242 |.!!..!:!:::!||| !:!! !!:!:!!.!. ||| sSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeu 204859 : CAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTT : 204899 vulgar: gi|383850524|ref|XP_003700845.1| 18 242 . KQ414889.1 204227 204899 + 233 M 25 75 G 1 0 M 32 96 G 0 3 M 51 153 G 1 0 M 37 111 G 0 3 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204228 204899 233 + . gene_id 17 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204228 204899 . + . KQ414889.1 exonerate:protein2genome:local exon 204228 204899 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 204228 204899 233 + . alignment_id 17 ; Query gi|383850524|ref|XP_003700845.1| ; Align 204228 19 75 ; Align 204303 45 96 ; Align 204402 77 153 ; Align 204555 129 111 ; Align 204669 166 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 226 Query range: 301 -> 403 Target range: 297439 -> 297818 302 : LeuGlnTyrTyrCysLeuLysSerTrpLysAlaSerAspThrValGlnIleValThrT : 321 |||:::|||::: ...:::.!!||||||.!! !|||! !:!! |||||| LeuLysTyrHisPhePheGlnGlyTrpLysThrHisAspMetIlePheGlyValThrI 297440 : ttaaaatatcatttttttcaggGATGGAAAACTCACGATATGATTTTTGGGGTAACGA : 297497 322 : yrIleThrLeuLeuMetSerPheThrTyrAsnIlePheValPheCysTyrIleGlyGl : 340 ! ! !!!!:!!:!:|||.!!|||!:!||||||||||||!!.|||:!! !||||| leGlyGlyPheMetLeuSerIleThrPheAsnIlePheValLeuCysHisAlaGlyGl 297498 : TCGGCGGTTTCATGCTTTCGATCACTTTTAATATATTCGTATTATGTCATGCAGGTGA : 297554 341 : uValLeuThrGluGln >>>> Target Intron 1 >>>> CysSerGlnIleG : 350 |:!!|||..!|||:!! 73 bp ..!..!:!!.!!| uLeuLeuValGluGlu++ ++AlaGluLysPheG 297555 : ACTTCTTGTCGAGGAGgt.........................agGCTGAAAAATTCG : 297657 351 : lyValAlaSerTyrAspIleAspTrpTyrAsnLeuProAlaLysAsnAlaHisAspLe : 369 || !|||:!!|||:!!|||!!:||||||||||||||| !!!!.!..|||! !||||| lyAsnAlaAlaTyrAsnIleGluTrpTyrAsnLeuProProAsnArgAlaLeuAspLe 297658 : GCAATGCAGCTTATAACATCGAATGGTACAACTTACCGCCAAACAGGGCTCTCGATCT : 297714 370 : uValLeuLeuAsnIleValSerGlnAsnProProLysLeuLeuAlaGlyArgIleIle : 388 |||||||:!!! ! !:!!:!!:!! !||||||!:!||| !...|||:::|||... uValLeuMetIleGlyIleAlaLysPheProProArgLeuThrGlyGlyLysIlePhe 297715 : GGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCACAggtggaaaaatattc : 297771 389 : GluLeuSerLeuAsnThrPheThrAlaValValLysThrSerVal : 403 ::::::|||:!!|||||||||!:!|||||| !!:: |||::: AspIleSerIleAsnThrPheSerAlaValArgArgGlnSerLeu 297772 : gatatatCGATAAACACGTTCAGTGCCGTACGTAgacaaagttta : 297818 vulgar: gi|383850524|ref|XP_003700845.1| 301 403 . KQ414889.1 297439 297818 + 226 M 44 132 5 0 2 I 0 69 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297440 297818 226 + . gene_id 18 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 297440 297571 . + . KQ414889.1 exonerate:protein2genome:local exon 297440 297571 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 297572 297573 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 297572 297644 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 297643 297644 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 297645 297818 . + . KQ414889.1 exonerate:protein2genome:local exon 297645 297818 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297440 297818 226 + . alignment_id 18 ; Query gi|383850524|ref|XP_003700845.1| ; Align 297440 302 132 ; Align 297645 346 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 221 Query range: 11 -> 242 Target range: 194141 -> 194831 12 : LysAsnSerTyrTyrSerAlaAspIleGlnTyrSerLeuGlnMetCysGlnTrpThrL : 31 :::||| ! !!|||!.! !|||! !:!!|||:!!:!!!:!:!:...:!! ! !| ArgAsnValAsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuL 194142 : CGCAACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTC : 194199 32 : euLysProIleGlyIleTrpProLeuIleTyrHisArgValThrArgArgGluLysLe : 50 ||! !|||||||||||||||||| .....!! !:!!! !|||!!:!:!:! euThrProIleGlyIleTrpPro---------ArgGluAspSerLeuArgAspArgVa 194200 : TAACACCGATCGGTATCTGGCCA---------AGGGAGGATTCTCTTCGCGACAGAGT : 194247 51 : uIleSerValValLeuLeuIleLeuGlyPheSerLeuLeuPhePheIleLeuIlePro : 69 ! ! ! !!!.!! ! ! !:!!! !|||:!!|||:!!! !|||:!!|||:!!||| lArgLeuPheAlaGlnThrGlyValValPheAlaLeuMetCysPheLeuLeuValPro 194248 : CCGACTGTTCGCTCAAACTGGCGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCT : 194304 70 : SerCysArgPheIlePhePheGluGlyHisIleSerThrLys<->ValArgLeuLeuG : 88 ! ! !!:!! !!:!|||!!: !!.!. ! !|||!:! :!!!:!:!!:!!! HisValIleTyrThrTyrPheAspCysGluAspLeuThrArgTyrMetLysValIleA 194305 : CACGTGATCTACACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCG : 194364 89 : lyProValGlyTyrArgMetSerThrThrValLysTyrIleTyrLeuAlaLeuArgGl : 107 .! !! !! !!:!!!!:!!! !.!!! !:!!|||!:! :!! !:!!!.! ! laAlaGlnValPheSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnAr 194365 : CGGCGCAAGTGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAG : 194421 108 : ySerIlePheGlyArgCysIleGluHisValGluArgAspTrpArgThrValGlnAsp : 126 !!.! .!! !! !|||:!: !.!.:!!|||! !.!.!::||| !|||:!! ! gLysGluIleArgPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCys 194422 : GAAAGAGATCAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGC : 194478 127 : GlnArgHisArgSerIleMetLeuGluCysAlaGlyLeuSerArgLysLeuIleThrM : 146 :!!..! !!|||..!:!:||| !.!.|||||| !:!!.!!||| !!!! !|||: GluGluAspArgGlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrL 194479 : GAGGAGGATCGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCC : 194538 147 : etCysAlaAlaPheLeuTyrThrGlyGlyLeuSerHisHisThrValHisAlaPhePh : 165 !!! ! !!.!.!!! !||| !|||!.!||| !!:!!|||! !:!!! !!.!..! euTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMe 194539 : TGTACTTGGGACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGAT : 194595 166 : eSer<->LysAspArgArgHisSerAsnValThrIleArgProLeuIleTyrProGly : 183 .||| !:! ! !!:!.!...!||| !||| ! !|||||| !||| !.!! tSerGluArgIleValLysGluAspAsnSerThrGlnIleProLeuProTyrLeuSer 194596 : GTCGGAGAGGATTGTCAAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGC : 194652 184 : TyrAspAlaPhePheAspThrGlnAlaSerProThrTyrGluIleIleTyrCysMetG : 203 !! !!!.!||||||! ! !:!!! !||||||! !|||||||||! !!:! ! !| AsnTyrValPhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerG 194653 : AACTATGTTTTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGC : 194712 204 : lnLeuLeuSerSerLeuIleValTyrThrIleGlyThrAlaThrTyrSerLeuLeuVa : 222 ||:!!|||! !||| !|||:!!! :!!! ..! !!.!! !|||||||||:!!!. lnIleLeuIleSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAl 194713 : AGATACTGATTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGC : 194769 223 : lIlePheValMetHisIleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAsn : 241 !! !.!!:!!|||||| !|||||| !.!!:!!:!: ! !|||:!!|||!.! aThrIleIleMetHisCysCysGlyLeuPheGluValThrSerArgArgMetGluThr 194770 : TACTATTATTATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGATGGAGACT : 194826 242 : Leu : 242 :!! Ile 194827 : ATT : 194831 vulgar: gi|383850524|ref|XP_003700845.1| 11 242 . KQ414889.1 194141 194831 + 221 M 27 81 G 3 0 M 42 126 G 0 3 M 83 249 G 0 3 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194142 194831 221 + . gene_id 19 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194142 194831 . + . KQ414889.1 exonerate:protein2genome:local exon 194142 194831 . + . insertions 6 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 194142 194831 221 + . alignment_id 19 ; Query gi|383850524|ref|XP_003700845.1| ; Align 194142 12 81 ; Align 194223 42 126 ; Align 194352 84 249 ; Align 194604 167 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 219 Query range: 15 -> 251 Target range: 226912 -> 227626 16 : TyrSerAlaAspIleGlnTyrSerLeuGlnMetCysGlnTrpThrLeuLysProIleG : 35 |||..!! ! !!:!:.!. |||:!!|||:!! !!::||| !|||||||||:!!| TyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuG 226913 : TATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCG : 226970 36 : lyIleTrpProLeuIleTyrHisArgValThrArgArgGluLysLeuIleSerValVa : 54 ||||||||||| ! !.!!:! !:!!|||! !! !!:!! !.!!||| !:! lyIleTrpPro---SerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLe 226971 : GTATCTGGCCG---TCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTT : 227024 55 : lLeuLeuIleLeuGlyPheSerLeuLeuPhePheIleLeuIleProSerCysArgPhe : 73 !:!! !.!!||| !!!:!:!!|||:!! !||| |||:!! !!||| !! !!:! uMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyr 227025 : GATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTAC : 227081 74 : IlePhePheGlu<->GlyHisIleSerThrLysValArgLeuLeuGlyProValGlyT : 92 :!: !!.!.||| ! ! !! !!.!! !:!!!:!:!!:!!||||||:!!..!! ValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerP 227082 : GTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCT : 227141 93 : yrArgMetSerThrThrValLysTyrIleTyrLeuAlaLeuArgGlySerIlePheGl : 111 :! ! !! !:!! !:!!|||||| ! |||.!!!!!!.!! !..! !.!! hePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLe 227142 : TCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCT : 227198 112 : yArgCysIleGluHisValGluArgAspTrpArgThrValGlnAspGlnArgHisArg : 130 !..!|||:!!|||!..:!!:!! !!||||||!:!!.!:!!::! !!! !..! !!||| uGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArg 227199 : CGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGA : 227255 131 : SerIleMetLeuGluCysAlaGlyLeuSerArgLysLeuIleThrMetCysAlaAlaP : 150 !:!:!:|||:!! !! !||| !! !.!!|||||||||||||||!!:|||.!! !| AsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPheP 227256 : AACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTT : 227315 151 : heLeuTyrThrGlyGlyLeuSerHisHisThrValHisAlaPhe<-><->PheSerLy : 167 ||:!!!:!!::... ::: :::! !||| !!.!! ||| heValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerVa 227316 : TCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGT : 227372 168 : sAspArgArgHisSerAsnValThrIleArgProLeuIleTyrProGlyTyrAspAla : 186 ! ! !..! !!.!!||| !!:! !! !! !:!! !:!||| ! ! ! lAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIle 227373 : TGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATC : 227429 187 : PhePheAspThrGlnAlaSerProThrTyrGluIleIleTyrCysMetGlnLeuLeuS : 206 .!! !|||..!!:: !|||||| ! !!||||||.!!!:!! :!:|||!!!:!!! IleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValT 227430 : ATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAA : 227489 207 : erSerLeuIleValTyrThrIleGlyThrAlaThrTyrSerLeuLeuValIlePheVa : 225 !!.!!:!!:!::!!:!! !:!! !:!!|||.!!! !|||:!! !!.!:!:.!!!. hrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAl 227490 : CAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGC : 227546 226 : lMetHisIleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAsnLeuLysAsn : 244 !:!:||| !|||||||||!!::!!:!: !:!!:!! !!|||! !:!!|||! :!! aValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAsp 227547 : GGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGAC : 227603 245 : AlaArgLeuGluAsnLeuLys : 251 !.!||| !!!:! !||| GlyArgAlaAspMetSerLys 227604 : GGCAGAGCGGATATGAGCAAA : 227626 vulgar: gi|383850524|ref|XP_003700845.1| 15 251 . KQ414889.1 226912 227626 + 219 M 23 69 G 1 0 M 38 114 G 0 3 M 87 261 G 0 6 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226913 227626 219 + . gene_id 20 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226913 227626 . + . KQ414889.1 exonerate:protein2genome:local exon 226913 227626 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226913 227626 219 + . alignment_id 20 ; Query gi|383850524|ref|XP_003700845.1| ; Align 226913 16 69 ; Align 226982 40 114 ; Align 227099 78 261 ; Align 227366 165 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 189 Query range: 274 -> 345 Target range: 214459 -> 214740 275 : LysPheSerGluLysValGlnLysAlaLeuGluGluIleCysPheThrAlaValValG : 294 !:!|||! !||| |||:!!|||||||||..!:!!:!!! !|||.!!! !:!!:!!! ArgPheLeuGluLeuValGluLysAlaLeuArgGlnValSerPheAlaGluLeuLeuV 214460 : AGATTCTTAGAGCTCGTGGAGAAAGCACTTCGGCAAGTATCTTTCGCTGAATTATTAG : 214517 295 : luCysThrIleAsnMetCysLeuLeuGlnTyrTyrCysLeuLys >>>> Target : 309 !||||||:!:|||:!:||||||:!! !|||||| :!!! ! 68 alCysThrValAsnLeuCysLeuValGlyTyrTyrIleIleThr++ 214518 : TATGCACGGTGAATCTCTGTCTCGTTGGATATTACATAATAACGgt............ : 214564 310 : Intron 1 >>>> SerTrpLysAlaSerAspThrValGlnIleValThrTyrIleT : 323 bp ..!|||!!.:!!!:!:!! !..! ! !|||||||||:!:. ++GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValV 214565 : .............aggAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGG : 214672 324 : hrLeuLeuMetSerPheThrTyrAsnIlePheValPheCysTyrIleGlyGluValLe : 342 .!|||! !!!:|||...|||:::|||||||||:::||||||||||||||||||:!!:! alLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuVa 214673 : TGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGGCGAGCTTGT : 214729 343 : uThrGluGln : 345 !:!!|||||| lSerGluGln 214730 : GTCTGAACAG : 214740 vulgar: gi|383850524|ref|XP_003700845.1| 274 345 . KQ414889.1 214459 214740 + 189 M 34 102 5 0 2 I 0 64 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214460 214740 189 + . gene_id 21 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214460 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214460 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214460 214740 189 + . alignment_id 21 ; Query gi|383850524|ref|XP_003700845.1| ; Align 214460 275 102 ; Align 214630 309 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 273 -> 345 Target range: 210492 -> 210774 274 : LeuLysPheSerGluLysValGlnLysAlaLeuGluGluIleCysPheThrAlaValV : 293 !!!!..|||! !! !..!:!!!!. !|||.!.||||||! !!.! !! !:!!| PheSerPheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGluMetV 210493 : TTCAGTTTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAATGG : 210550 294 : alGluCysThrIleAsnMetCysLeuLeuGlnTyrTyrCysLeuLys >>>> Targ : 309 ||! !||||||:!:|||||||||!!!||| |||||| :!!! alGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210551 : TGGGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt......... : 210600 310 : et Intron 1 >>>> SerTrpLysAlaSerAspThrValGlnIleValThrTyrI : 322 66 bp ..!||| ! :!!!.!||| !!:!!...! !:!!||||||| ++GluTrpAspSerLysAspProIleSerSerLeuThrTyrI 210601 : ................agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACA : 210703 323 : leThrLeuLeuMetSerPheThrTyrAsnIlePheValPheCysTyrIleGlyGluVa : 341 ||..!||||||! ||| !!|||!:!|||||||||:!!|||||||||||||||||||| leValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluVa 210704 : TAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGT : 210760 342 : lLeuThrGluGln : 345 ||||.!!|||||| lLeuAlaGluGln 210761 : GTTGGCTGAACAg : 210774 vulgar: gi|383850524|ref|XP_003700845.1| 273 345 . KQ414889.1 210492 210774 + 175 M 35 105 5 0 2 I 0 62 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210493 210774 175 + . gene_id 22 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 210493 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210493 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210493 210774 175 + . alignment_id 22 ; Query gi|383850524|ref|XP_003700845.1| ; Align 210493 274 105 ; Align 210664 309 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 279 -> 347 Target range: 304951 -> 305217 280 : ValGlnLysAlaLeuGluGluIleCysPheThrAlaValValGluCysThrIleAsnM : 299 ||||||! !!.!|||:!!|||:!!|||||| !! ! !!:!!! ! !|||:!! ! ValGlnThrValLeuGlnGluValCysPheLeuGluPheIleGlySerThrLeuLeuI 304952 : GTGCAAACAGTGTTGCAAGAAGTATGCTTCTTGGAATTCATTGGTTCTACCTTACTGA : 305009 300 : etCysLeuLeuGlnTyrTyrCys >>>> Target Intron 1 >>>> LeuLys : 308 !:|||||||||:!!||||||||| 62 bp ::! leCysLeuLeuGluTyrTyrCys-+ -+***Gln 305010 : TATGTCTACTTGAATACTACTGTat.........................tgtaacaG : 305098 309 : SerTrpLysAlaSerAspThrValGlnIleValThrTyrIleThrLeuLeuMetSerP : 328 ..!|||:!!::!|||:!!||||||...:!!..!||||||! !..!||||||!!:||| AspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValLeuLeuIleSerV 305099 : GATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGTTACTGATATCTG : 305158 329 : heThrTyrAsnIlePheValPheCysTyrIleGlyGluValLeuThrGluGlnCysSe : 347 ! |||!:!|||||||||:!!!!.|||||||||||||||:!!|||! !|||:!! || alThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMetGluLysValSe 305159 : TAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTATGGAAAAGGTGag : 305215 348 : r : 347 | r 305216 : t : 305217 vulgar: gi|383850524|ref|XP_003700845.1| 279 347 . KQ414889.1 304951 305217 + 159 M 27 81 5 0 2 I 0 58 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304952 305217 159 + . gene_id 23 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 304952 305032 . + . KQ414889.1 exonerate:protein2genome:local exon 304952 305032 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305033 305034 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 305033 305094 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305093 305094 . + . intron_id 0 ; splice_site "tg" KQ414889.1 exonerate:protein2genome:local cds 305095 305217 . + . KQ414889.1 exonerate:protein2genome:local exon 305095 305217 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304952 305217 159 + . alignment_id 23 ; Query gi|383850524|ref|XP_003700845.1| ; Align 304952 280 81 ; Align 305095 307 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 273 -> 345 Target range: 234518 -> 234914 274 : LeuLysPheSerGluLysValGlnLysAlaLeuGluGluIleCysPheThrAlaValV : 293 !!!!..|||! !..!!!.:!!:!!!!.!.!:!!.!. !||||||.!...!! !:!!| PheSerPheIleArgAsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuV 234519 : TTCAGTTTTATACGGAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGG : 234576 294 : alGluCysThrIleAsnMetCysLeuLeuGlnTyrTyrCysLeuLys >>>> Targ : 309 ||! !||||||:!:|||||||||:!!|||:!!||||||! |||! ! alGlyCysThrLeuAsnMetCysMetLeuGluTyrTyrLeuLeuThr++ 234577 : TAGGATGCACGTTGAACATGTGCATGCTCGAGTATTATTTACTCACGgt......... : 234626 310 : et Intron 1 >>>> SerTrpLysAlaSerAspThrValGlnIleValThrTyrI : 322 189 bp ..! |||:::...::: ::::::..!:!!|||: ++Glu---LysSerLysGlu------LysLeuAlaSerTyrV 234627 : ................agGAA---AAgtcgaaggaa------aaattagCTTCATACG : 234843 323 : leThrLeuLeuMetSerPheThrTyrAsnIlePheValPheCysTyrIleGlyGluVa : 341 !!! !:!!! !:!!|||.!.|||!::|||||||||:::||||||||||||||||||.. alIleValTyrValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluTh 234844 : TCATCGTGTACGTGTCCATGACATTtaatatattcatattttgttACATCGGAGAGAC : 234900 342 : lLeuThrGluGln : 345 !|||||||||||| rLeuThrGluGln 234901 : GCTTACAGAGCAG : 234914 vulgar: gi|383850524|ref|XP_003700845.1| 273 345 . KQ414889.1 234518 234914 + 142 M 35 105 5 0 2 I 0 185 3 0 2 M 1 3 G 1 0 M 4 12 G 2 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234519 234914 142 + . gene_id 24 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234519 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234519 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 234519 234914 142 + . alignment_id 24 ; Query gi|383850524|ref|XP_003700845.1| ; Align 234519 274 105 ; Align 234813 309 3 ; Align 234816 311 12 ; Align 234828 317 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 344 -> 413 Target range: 230244 -> 230518 345 : GlnCysSerGlnIleGlyValAlaSerTyrAspIleAspTrpTyrAsnLeuProAlaL : 364 ||||||!!!:!!:!!|||! ! !|||||| |||!!:||||||...||| !!!.!! GlnCysArgLysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyA 230245 : CAGTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAA : 230302 365 : ysAsnAlaHisAspLeuValLeuLeuAsnIleValSerGlnAsnProProLysLeuLe : 383 !.!!. !! ! !! !:!!|||:!!! ! !:!!|||.!. ! !! !!|||!!! snLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheTh 230303 : ACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTAC : 230359 384 : uAlaGlyArgIleIleGluLeuSerLeuAsnThrPheThrAla >>>> Target I : 398 !||||||!.!!!::!!|||||||||:!!|||||||||!:!! ! 67 rAlaGlyAsnMetValGluLeuSerValAsnThrPheSerAsp++ 230360 : AGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGACgt............. : 230406 399 : ntron 1 >>>> ValValLysThrSerValAlaTyrMetAsnLeuLeuArgThrVa : 412 bp |||||||||||||||:!!!.!!:!:!:|||:!!|||||||||:! ++ValValLysThrSerMetGlyPheLeuAsnMetLeuArgThrLe 230407 : ............agGTCGTTAAAACGTCCATGGGTTTCTTAAACATGCTACGAACACT : 230513 413 : lThr : 413 !||| uThr 230514 : GACG : 230518 vulgar: gi|383850524|ref|XP_003700845.1| 344 413 . KQ414889.1 230244 230518 + 135 M 53 159 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230245 230518 135 + . gene_id 25 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 230245 230403 . + . KQ414889.1 exonerate:protein2genome:local exon 230245 230403 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 230404 230405 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 230404 230470 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 230469 230470 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230471 230518 . + . KQ414889.1 exonerate:protein2genome:local exon 230471 230518 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230245 230518 135 + . alignment_id 25 ; Query gi|383850524|ref|XP_003700845.1| ; Align 230245 345 159 ; Align 230471 398 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 308 -> 345 Target range: 219328 -> 219439 309 : SerTrpLysAlaSerAspThrValGlnIleValThrTyrIleThrLeuLeuMetSerP : 328 ..!||||||:!!!:!|||..!..!... !||||||||||||! !||||||!!:|||. GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 329 : heThrTyrAsnIlePheValPheCysTyrIleGlyGluValLeuThrGluGln : 345 !.|||:::|||||||||:::||||||||||||||||||:!!:!!.!!|||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: gi|383850524|ref|XP_003700845.1| 308 345 . KQ414889.1 219328 219439 + 133 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219439 133 + . gene_id 26 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219439 133 + . alignment_id 26 ; Query gi|383850524|ref|XP_003700845.1| ; Align 219329 309 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 306 -> 345 Target range: 224317 -> 224434 307 : LeuLysSerTrpLysAlaSerAspThrValGlnIleValThrTyrIleThrLeuLeuM : 326 !!!:::...|||...:::||| !! !..!... |||||||||.!!! !||||||| PheGlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuM 224318 : TTTCaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCA : 224375 327 : etSerPheThrTyrAsnIlePheValPheCysTyrIleGlyGluValLeuThrGluGl : 345 |||||...|||:::|||||||||:::||||||||||||||||||:!!:!!.!!||||| etSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl 224376 : TGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAca : 224432 346 : n : 345 | n 224433 : g : 224434 vulgar: gi|383850524|ref|XP_003700845.1| 306 345 . KQ414889.1 224317 224434 + 122 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224318 224434 122 + . gene_id 27 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224318 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224318 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224318 224434 122 + . alignment_id 27 ; Query gi|383850524|ref|XP_003700845.1| ; Align 224318 307 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 303 -> 349 Target range: 258249 -> 258387 304 : TyrTyrCysLeuLysSerTrpLysAlaSerAspThrValGlnIleValThrTyrIleT : 323 :::||| ...:::..!|||....!!...||| ...::: :::|||.!!! PheTyrTyrPheGlnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheM 258250 : ttttattattttcaggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTA : 258307 324 : hrLeuLeuMetSerPheThrTyrAsnIlePheValPheCysTyrIleGlyGluValLe : 342 !:!!|||!!:|||...::::::||||||||||||...|||||||||||||||:!!|| etIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLe 258308 : TGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATT : 258364 343 : uThrGluGlnCysSerGlnIle : 349 |||||||||| ! :::||| uThrGluGlnValProGluIle 258365 : AACAGAACAGGTACCagagatt : 258387 vulgar: gi|383850524|ref|XP_003700845.1| 303 349 . KQ414889.1 258249 258387 + 122 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258250 258387 122 + . gene_id 28 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 258250 258387 . + . KQ414889.1 exonerate:protein2genome:local exon 258250 258387 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258250 258387 122 + . alignment_id 28 ; Query gi|383850524|ref|XP_003700845.1| ; Align 258250 304 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 303 -> 349 Target range: 261718 -> 261856 304 : TyrTyrCysLeuLysSerTrpLysAlaSerAspThrValGlnIleValThrTyrIleT : 323 :::::: |||:::..!||| ! !..!|||! ! !.!.:!: !||||||.!!! PhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheM 261719 : ttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCA : 261776 324 : hrLeuLeuMetSerPheThrTyrAsnIlePheValPheCysTyrIleGlyGluValLe : 342 !:!!|||!!::!!.!! !!:!|||:!!|||:!!.!!|||||||||||||||:!!|| etMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLe 261777 : TGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACT : 261833 343 : uThrGluGlnCysSerGlnIle : 349 |||||||||| ..!!!.:!: uThrGluGlnValGlnHisLeu 261834 : AACGGAACAGGTACAACATTTG : 261856 vulgar: gi|383850524|ref|XP_003700845.1| 303 349 . KQ414889.1 261718 261856 + 115 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261719 261856 115 + . gene_id 29 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 261719 261856 . + . KQ414889.1 exonerate:protein2genome:local exon 261719 261856 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 261719 261856 115 + . alignment_id 29 ; Query gi|383850524|ref|XP_003700845.1| ; Align 261719 304 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 308 -> 344 Target range: 228247 -> 228355 309 : SerTrpLysAlaSerAspThrValGlnIleValThrTyrIleThrLeuLeuMetSerP : 328 ..!|||!!. !!!.!!!: !..! !||||||||| !.!!||||||:!:|||| GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerP 228248 : GAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCT : 228305 329 : heThrTyrAsnIlePheValPheCysTyrIleGlyGluValLeuThrGlu : 344 |||||:::|||||||||:::||||||||||||||||||:!!:!!.!!||| heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGlu 228306 : TTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAA : 228355 vulgar: gi|383850524|ref|XP_003700845.1| 308 344 . KQ414889.1 228247 228355 + 114 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228248 228355 114 + . gene_id 30 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 228248 228355 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228355 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228248 228355 114 + . alignment_id 30 ; Query gi|383850524|ref|XP_003700845.1| ; Align 228248 309 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 308 -> 348 Target range: 272836 -> 272956 309 : SerTrpLysAlaSerAspThrValGlnIleValThrTyrIleThrLeuLeuMetSerP : 328 ..!|||! ! ! !||| ! !...:!!..!||||||.!!! !:!!|||!!:|||. GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 329 : heThrTyrAsnIlePheValPheCysTyrIleGlyGluValLeuThrGluGlnCysSe : 347 !.|||:::|||||||||::: |||||||||||||||:!!|||||||||::! ! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArgValMe 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGGTAAT : 272951 348 : rGln : 348 ||| tGln 272952 : gcaa : 272956 vulgar: gi|383850524|ref|XP_003700845.1| 308 348 . KQ414889.1 272836 272956 + 111 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 272956 111 + . gene_id 31 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272837 272956 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272956 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 272956 111 + . alignment_id 31 ; Query gi|383850524|ref|XP_003700845.1| ; Align 272837 309 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 306 -> 345 Target range: 264531 -> 264648 307 : LeuLysSerTrpLysAlaSerAspThrValGlnIleValThrTyrIleThrLeuLeuM : 326 !!!:!!..!|||:!!::! ||| ...:::..!||||||.!!! !:!!|||! PheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuI 264532 : TTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATACTGA : 264589 327 : etSerPheThrTyrAsnIlePheValPheCysTyrIleGlyGluValLeuThrGluGl : 345 !:|||.!. ! !|||||||||:!!.!.|||||||||||||||:!!||||||||||| leSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGl 264590 : TATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGca : 264646 346 : n : 345 | n 264647 : g : 264648 vulgar: gi|383850524|ref|XP_003700845.1| 306 345 . KQ414889.1 264531 264648 + 106 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264532 264648 106 + . gene_id 32 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264532 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264532 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264532 264648 106 + . alignment_id 32 ; Query gi|383850524|ref|XP_003700845.1| ; Align 264532 307 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850524|ref|XP_003700845.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 308 -> 345 Target range: 277371 -> 277482 309 : SerTrpLysAlaSerAspThrValGlnIleValThrTyrIleThrLeuLeuMetSerP : 328 ..!|||...! !||||||..! ! !!!:..!|||:!!.!!! !:!!|||!!:|||. GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 329 : heThrTyrAsnIlePheValPheCysTyrIleGlyGluValLeuThrGluGln : 345 !. :::|||||||||..! ! |||||||||||||||:!!|||||||||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAG : 277482 vulgar: gi|383850524|ref|XP_003700845.1| 308 345 . KQ414889.1 277371 277482 + 104 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277482 104 + . gene_id 33 ; sequence gi|383850524|ref|XP_003700845.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277482 104 + . alignment_id 33 ; Query gi|383850524|ref|XP_003700845.1| ; Align 277372 309 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1445 Query range: 1 -> 402 Target range: 217132 -> 219803 2 : GlnLysSerGlyLysAspSerGluTyrGluArgHisValAsnLeuSerIleGlnTrpA : 21 |||... !! !!! |||! !|||||||||:::::::::||||||||||||||||||| GlnSerProArgThrAspTyrGluTyrGluLysAsnIleAsnLeuSerIleGlnTrpA 217133 : CAATCCCCCAGAACCGACTACGAgtacgagaaaaatataaatctcaGTATCCAATGGA : 217190 22 : snArgTrpLeuLeuLysProIleGlyIleTrpProHisSer<->AspMetSerArgTh : 39 ||||||||||||||||||||!!:|||:!!||||||:!!||| !! !!!|||:! snArgTrpLeuLeuLysProMetGlyLeuTrpProAsnSerArgThrThrThrArgSe 217191 : ATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACTCACGTACCACCACCAGATC : 217247 40 : rLysLysLeuTyrAspTrpPheThrTyrValValCysTyrGlyLeuIleSerPheLeu : 58 !::!|||:!! ! !! .!.! ! !!!.!:!!|||||||||||||||||||||||| rArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeu 217248 : CCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTA : 217304 59 : PheValProCysSerMetTyrValPheLeuGluValGluAspLeuTyrAsnLysIleL : 78 ||||||||||||||||||||||||||||||||||||||||||||||||:!!|||:!:| PheValProCysSerMetTyrValPheLeuGluValGluAspLeuTyrAspLysLeuL 217305 : TTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGA : 217364 79 : ysLeuPheGlyProLeuIlePhePheLeuMetAlaPheAlaLysTyrTyrLeuLeuIl : 97 |||||||||||||||||||||||! !:!!|||||||||!.!|||||||||! !||||| ysLeuPheGlyProLeuIlePheCysValMetAlaPheValLysTyrTyrSerLeuIl 217365 : AACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGAT : 217421 98 : eTyrHisGlyAsnAspIleArgGluCysIleGluArgIleLysTrpAspTrpLysAsn : 116 | !||| ! |||||||||||||||:!:..!||||||:!! !!||||||!:!||| eValHisLysAlaAspIleArgGluCysValArgArgIleGluArgAspTrpArgAsn 217422 : CGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAAT : 217478 117 : IleThrTyrHisAspAspLysAsnIleMetLeuGluAsnAlaAsnPheGlyArgArgL : 136 :!!! !! !.!. ! |||!:!.!. |||:!!! !||||||||||||||||||!:!| ValArgCysGluLysAspArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysL 217479 : GTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAAT : 217538 137 : euValThrValCysThrPhePheMetTyrSerGlyPheAlaSerTyrTyrIleIleIl : 155 ||||| !:!!|||||||||||||||||||||||||||... ||||||||| !|| euValLeuLeuCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIl 217539 : TGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcgttttttattacatCGCTAT : 217595 156 : eProIleThrIleGlyLysValLysSerGluAspGlyAsnLeuThrPheIleProLeu : 174 |||||||!:!:!:|||!:!:!! !||||||:!!|||||||||||||||||||||||| eProIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeu 217596 : ACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTG : 217652 175 : AlaPheProPheSerSerLeuIleValAspThrArgTyrSerProThrAsnGluIleI : 194 !.!|||||||||!!!!.!! !|||:!!||||||||||||!!!|||||||||||||||: ValPheProPheThrLysTyrIleIleAspThrArgTyrThrProThrAsnGluIleV 217653 : GTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCTACGAACGAAATTG : 217712 195 : lePheSerValGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCy : 213 !:|||! !:!!||||||||||||||||||||||||||||||||||||||||||||||| alPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCy 217713 : TGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTG : 217769 214 : sGlyLeuGlyAlaMetLeuAlaValHisAlaCysGlyGlnMetGlnValLeuMetAsn : 232 |.!!|||!.!||| !!!|||||||||||||||||||||!!::!!|||||||||||| sSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGluValLeuMetAsn 217770 : CAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAAC : 217826 233 : TrpLeuLysHisLeuAsnAspGlyArgSerAspMetGlyGluSerValAspAspArgI : 252 ||||||:!!||||||! !|||||||||:!!||||||.!!!!:!!!||||||! !|||| TrpLeuGlnHisLeuIleAspGlyArgAlaAspMetSerAspThrValAspGlyArgI 217827 : TGGCTGCAACATTTAATCGACGGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAA : 217886 253 : leAlaCysIleValSerGlnHisValArgIleLeu{Ly} >>>> Target Intro : 264 ||||| !!|||||||||||||||||||||||||||{||} 1229 bp leAlaSerIleValSerGlnHisValArgIleLeu{Ly}++ 217887 : TCGCGAGCATCGTCAGTCAACACGTTCGGATATTA{AA}gt................. : 217926 265 : n 1 >>>> {s}TyrLeuThrHisThrGluArgThrLeuGlnLeuIleSerPheAla : 279 {|}:::||||||! !||||||||||||||||||! !|||||||||||| ++{s}PheLeuThrLeuThrGluArgThrLeuGlnGlnIleSerPheAla 217927 : ........ag{a}tttttgaCGCTCACAGAGAGAACCCTCCAGCAAATCTCTTTCGCT : 219196 280 : GluPheLeuGlyCysThrValAspIleCysLeuLeuGlyTyrTyrValIleMet >> : 298 ||||||||||||||||||:!!||||||||||||:!!|||||||||:!!|||:!! GluPheLeuGlyCysThrMetAspIleCysLeuValGlyTyrTyrIleIleVal++ 219197 : GAATTTCTAGGATGCACCATGGACATATGTCTCGTTGGATATTACATTATCGTGgt.. : 219255 299 : >> Target Intron 2 >>>> GluSerLysSerAsnAspIleThrAsnThrVal : 308 76 bp |||!!!||||||||||||:!!|||!:!.!!||| ++GluTrpLysSerAsnAspValThrSerAlaVal 219256 : .......................agGAATGGAAATCGAATGATGTAACGAGTGCAGTG : 219359 309 : ThrTyrAlaIleLeuLeuThrSerLeuThrPheAsnIlePheIlePheCysTyrIleG : 328 |||||| !|||||||||! !||||||||||||||||||||||||||||||||||||| ThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleG 219360 : ACATACATCATTCTACTTATATCCCTcactttcaacattttcatattttgctaCATAG : 219419 329 : lyGluLeuValAlaGluGln >>>> Target Intron 3 >>>> CysLysLys : 337 |||||:!!|||||||||||| 73 bp |||:::||| lyGluIleValAlaGluGln++ ++CysArgLys 219420 : GAGAGATCGTTGCTGAACAggt.........................agTGtaggaaa : 219519 338 : IleGlyGluMetThrTyrMetThrGluTrpTyrArgLeuProGlyAsnLysLysLeuT : 357 ||||||||||||:!!||||||! !||||||||||||||| !!|||!!.|||||||||! IleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysLysLeuT 219520 : attggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAAAGCTCT : 219579 358 : yrCysIleMetIleIleAlaMetSerAsnSerSerMetLysLeuThrAlaGlySerMe : 376 :: !!:!!:!!! !|||||||||||||||||||||!!:|||||||||||||||!:!|| rpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMe 219580 : GGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGGAAATAT : 219636 377 : tValGluLeuSerIleGluThrPheThrAsn >>>> Target Intron 4 >>>> : 387 ||||||||||||||||...|||||||||:!! 87 bp tValGluLeuSerIleSerThrPheThrAsp++ 219637 : GGTCGAATTGTCTATCAGCACTTTTACCGACgt......................... : 219671 388 : ValValLysThrAlaPheAlaPheLeuAsnValLeuArgThrMetThr : 402 ||||||||||||||| !!.!!|||||||||||||||||||||:!!||| ++ValValLysThrAlaValThrPheLeuAsnValLeuArgThrLeuThr 219672 : agGTCGTTAAGACTGCAGTCACGTTTCTGAATGTACTACGAACATTGACT : 219803 vulgar: gi|383850508|ref|XP_003700837.1| 1 402 . KQ414889.1 217132 219803 + 1445 M 33 99 G 0 3 M 229 687 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 37 111 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 83 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217133 219803 1445 + . gene_id 1 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217133 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217133 217923 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219668 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219668 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219669 219670 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219669 219755 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 219754 219755 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219756 219803 . + . KQ414889.1 exonerate:protein2genome:local exon 219756 219803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217133 219803 1445 + . alignment_id 1 ; Query gi|383850508|ref|XP_003700837.1| ; Align 217133 2 99 ; Align 217235 35 687 ; Align 219154 265 99 ; Align 219329 298 111 ; Align 219513 335 156 ; Align 219756 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1250 Query range: 5 -> 402 Target range: 212842 -> 215136 6 : LysAspSerGluTyrGluArgHisValAsnLeuSerIleGlnTrpAsnArgTrpLeuL : 25 :!!|||!!! ||||||!:!!..||||||||||||||| !|||||||||||||||| GluAspCysThrTyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuL 212843 : GAAGACTGTACCTACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTT : 212900 26 : euLysProIleGlyIleTrpPro<->HisSerAspMetSerArgThrLysLysLeuTy : 43 ||||||||! |||:!:|||||| ! ||| !!:!:|||! !! !:!!||| ! euLysProThrGlyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIl 212901 : TGAAACCAACGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACAT : 212957 44 : rAspTrpPheThrTyrValValCysTyrGlyLeuIleSerPheLeuPheValProCys : 62 !! ! ! !!...! !!..!||||||||||||||||||.!!!:!||| ! :!!|||||| eAlaArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCys 212958 : CGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGC : 213014 63 : SerMetTyrValPheLeuGluValGluAspLeuTyrAsnLysIleLysLeuPheGlyP : 82 |||:!!||||||||||||!!:||||||:::::::::...:::|||:!!||||||||| SerLeuTyrValPheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyI 213015 : AGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCA : 213074 83 : roLeuIlePhePheLeuMetAlaPheAlaLysTyrTyrLeuLeuIleTyrHisGlyAs : 101 !!!! !|||! !:!! |||.!. !||||||:!!! !|||||| !||||||:! lePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAs 213075 : TTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGA : 213131 102 : nAspIleArgGluCysIleGluArgIleLysTrpAspTrpLysAsnIleThrTyrHis : 120 !||||||||| !|||:!!|||!.!!!:|||!::||||||||||||||||||:!!.!. pAspIleArgThrCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGlu 213132 : CGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAG : 213188 121 : AspAspLysAsnIleMetLeuGluAsnAlaAsnPheGlyArgArgLeuValThrValC : 140 !!:||||||.!.|||||| ! !||||||!:!||||||!:!|||:!!||||||:!!| GluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleC 213189 : GAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTT : 213248 141 : ysThrPhePheMetTyrSerGlyPheAlaSerTyrTyrIleIleIleProIleThrIl : 159 ||.!!||||||||||||!!!||||||.!!! !|||!:!:!!:!!:!!||||||!:! ysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAl 213249 : GTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGC : 213305 160 : eGlyLysValLysSerGluAspGlyAsnLeuThrPheIleProLeuAlaPheProPhe : 178 ! !|||:!! !:!!|||||| !|||:!!||||||! !! !:!!!.! !!||| !! aAspLysMetValAlaGluAspLeuAsnValThrPheArgGlnMetValValProVal 213306 : GGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTC : 213362 179 : SerSerLeuIleValAspThrArgTyrSerProThrAsnGluIleIlePheSerValG : 198 |||!!!!!!|||||||||..!||||||||||||..!|||||||||.!!|||! !:!!| SerArgPheIleValAspValArgTyrSerProValAsnGluIlePhePheLeuIleG 213363 : TCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTC : 213422 199 : lnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysGlyLeuGlyAl : 217 ||:!!|||||||||!.!|||!!:|||!.!|||.!! !!.!||||||.!!|||!.!|| lnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAl 213423 : AGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGC : 213479 218 : aMetLeuAlaValHisAlaCysGlyGlnMetGlnValLeuMetAsnTrpLeuLysHis : 236 |:!!!!!|||||||||||||||||||||||| :!!||||||!:!||||||:!!||| aValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHis 213480 : TGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACAT : 213536 237 : LeuAsnAspGlyArgSerAspMetGlyGluSerValAspAspArgIleAlaCysIleV : 256 |||! |||||||||..!||||||.!!:!!!:!|||||||||||||||||| !|||| LeuIleAspGlyArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleV 213537 : TTGATAGACGGTAGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCG : 213596 257 : alSerGlnHisValArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s : 264 ||!:!||||||||||||||||||{||} 840 bp {| alAsnGlnHisValArgIleLeu{Ly}++ ++{s 213597 : TGAACCAGCATGTGCGGATACTG{AA}gt.........................ag{A : 214462 265 : }TyrLeuThrHisThrGluArgThrLeuGlnLeuIleSerPheAlaGluPheLeuGly : 283 }!:!||| !! !..!|||!:!.!!|||!:!! !:!!||||||||||||!!.|||! ! }PheLeuGluLeuValGluLysAlaLeuArgGlnValSerPheAlaGluLeuLeuVal 214463 : }TTCTTAGAGCTCGTGGAGAAAGCACTTCGGCAAGTATCTTTCGCTGAATTATTAGTA : 214517 284 : CysThrValAspIleCysLeuLeuGlyTyrTyrValIleMet >>>> Target In : 298 |||||||||:!!:!!||||||:!!|||||||||:!!|||! ! 68 b CysThrValAsnLeuCysLeuValGlyTyrTyrIleIleThr++ 214518 : TGCACGGTGAATCTCTGTCTCGTTGGATATTACATAATAACGgt.............. : 214564 299 : tron 2 >>>> GluSerLysSerAsnAspIleThrAsnThrValThrTyrAlaIle : 312 p |||!!!!!.||||||:!!:!!|||!.!||||||||||||!.!:!: ++GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValVal 214565 : ...........aggAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGGTG : 214672 313 : LeuLeuThrSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValA : 332 |||! !! !||||||||||||||||||||||||||||||||||||||||||||||||: LeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValS 214673 : TTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGGCGAGCTTGTGT : 214732 333 : laGluGln >>>> Target Intron 3 >>>> CysLysLysIleGlyGluMet : 341 !!|||||| 123 bp |||||||||:!!||||||:!: erGluGln++ ++CysLysLysValGlyGluVal 214733 : CTGAACAGgt.........................agTGCAAAAAGGTCGGAGAAGTA : 214882 342 : ThrTyrMetThrGluTrpTyrArgLeuProGlyAsnLysLysLeuTyrCysIleMetI : 361 :!!||||||! !|||||||||||||||||||||||||||||||||! !||||||:!!| SerTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCysCysIleLeuI 214883 : TCGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGA : 214942 362 : leIleAlaMetSerAsnSerSerMetLysLeuThrAlaGlySerMetValGluLeuSe : 380 ||!!:||||||||||||||||||:!:|||!!!|||||||||!:!|||||||||||||| leMetAlaMetSerAsnSerSerValLysPheThrAlaGlyAsnMetValGluLeuSe 214943 : TCATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATGGTAGAACTGTC : 214999 381 : rIleGluThrPheThrAsn >>>> Target Intron 4 >>>> ValValLysT : 390 ||||...||||||!:!!:! 69 bp ||||||::!| rIleSerThrPheSerSer++ ++ValValArgT 215000 : TATCAGCACTTTCAGCAGTgt.........................agGTTGTTCGAA : 215098 391 : hrAlaPheAlaPheLeuAsnValLeuArgThrMetThr : 402 ||:!! !!||||||||||||!.!|||||||||...::: hrSerValAlaPheLeuAsnAlaLeuArgThrPheSer 215099 : CATCGGTTGCCTTCTTAAACGCGTTACgaacattttca : 215136 vulgar: gi|383850508|ref|XP_003700837.1| 5 402 . KQ414889.1 212842 215136 + 1250 M 27 81 G 0 3 M 231 693 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 M 33 99 5 0 2 I 0 64 3 0 2 M 37 111 5 0 2 I 0 119 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212843 215136 1250 + . gene_id 2 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212843 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 212843 213621 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215019 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215019 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 215020 215021 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 215020 215088 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 215087 215088 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 215089 215136 . + . KQ414889.1 exonerate:protein2genome:local exon 215089 215136 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212843 215136 1250 + . alignment_id 2 ; Query gi|383850508|ref|XP_003700837.1| ; Align 212843 6 81 ; Align 212927 33 693 ; Align 214463 265 99 ; Align 214630 298 111 ; Align 214864 335 156 ; Align 215089 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1220 Query range: 6 -> 402 Target range: 226903 -> 230518 7 : AspSerGluTyrGluArgHisValAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuL : 26 !!:!:!!!:|||:!!..!:!!:!!|||||||||||||||! !|||||||||||||||| GluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuL 226904 : GAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGA : 226961 27 : ysProIleGlyIleTrpProHisSer<->AspMetSerArgThrLysLysLeuTyrAs : 44 |||||:!!|||||||||||| ||| ! ! ||||||! ! !!:!! !!:!.. ysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSe 226962 : AACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTC : 227018 45 : pTrpPheThrTyrValValCysTyrGlyLeuIleSerPheLeuPheValProCysSer : 63 !|||!!.! ! ! !!:!!||||||!.!|||!!:|||||| !!!.||| !! !!.!! rTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGly 227019 : CTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGC : 227075 64 : MetTyrValPheLeuGluValGluAspLeuTyrAsnLysIleLysLeuPheGlyProL : 83 :!!|||||| !!|||||||||:!!! ! !||||||! !:!:|||:!!.!!||||||: LeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProM 227076 : TTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGA : 227135 84 : euIlePhePheLeuMetAlaPheAlaLysTyrTyrLeuLeuIleTyrHisGlyAsnAs : 102 !! !|||||| !|||:!!.!! !||||||! !:!!|||! !:!|||! !:!!|| etSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAs 227136 : TGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGA : 227192 103 : pIleArgGluCysIleGluArgIleLysTrpAspTrpLysAsnIleThrTyrHisAsp : 121 ||||! !||||||:!!||||||||||||||||||||||||||||||! !|||! !!: pIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGlu 227193 : CATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAG : 227249 122 : AspLysAsnIleMetLeuGluAsnAlaAsnPheGlyArgArgLeuValThrValCysT : 141 |||!:!|||:!:|||:!! ! !!||| !!!:!||||||!:!|||:!!|||:!!|||| AspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysT 227250 : GACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCA : 227309 142 : hrPhePheMetTyrSerGlyPheAlaSerTyrTyrIleIleIleProIleThrIleGl : 160 ||||||||:!:!:!|||...|||... :::||||||:!!:!!||||||!.! !|| hrPhePheValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGl 227310 : CGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGG : 227366 161 : yLysValLysSerGluAspGlyAsnLeuThrPheIleProLeuAlaPheProPheSer : 179 |!..||| !!!!||||||||||||! !!:!!:!|||! !:!! !!||||||||| !! ySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPhePro 227367 : AAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCA : 227423 180 : SerLeuIleValAspThrArgTyrSerProThrAsnGluIleIlePheSerValGlnL : 199 !.!:!!|||!.!|||..!|||||||||||| !|||||||||.!!||||||||||||! LysIleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnP 227424 : AAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAAT : 227483 200 : euIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysGlyLeuGlyAlaMe : 218 !!:!!.!!||| !:!!:!!||||||:!!|||||||||||||||.!!:!!!.!|||:! heValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLe 227484 : TTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCT : 227540 219 : tLeuAlaValHisAlaCysGlyGlnMetGlnValLeuMetAsnTrpLeuLysHisLeu : 237 !|||||||||||||||||||||||||||:!!||||||:!!::!|||||| !|||||| uLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeu 227541 : GCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTG : 227597 238 : AsnAspGlyArgSerAspMetGlyGluSerValAspAspArgIleAlaCysIleValS : 257 ! !|||||||||:!!||||||.!!:!!!!!:!!||||||||||||||| !!||||||! IleAspGlyArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValT 227598 : ATCGACGGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCA : 227657 258 : erGlnHisValArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}Ty : 265 !!!!.|||||||||||||||{!!} 396 bp {.}!: hrHisHisValArgIleLeu{As}++ ++{n}Ph 227658 : CTCACCACGTTCGAATATTG{AA}gt.........................ag{C}TT : 228077 266 : rLeuThrHisThrGluArgThrLeuGlnLeuIleSerPheAlaGluPheLeuGlyCys : 284 !|||.!!! !! !|||!:!|||:!!|||! !|||:!!|||!.!||||||||||||||| eLeuAlaLeuIleGluLysThrMetGlnGlnIleAlaPheValGluPheLeuGlyCys 228078 : TCTGGCCCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGT : 228134 285 : ThrValAspIleCysLeuLeuGlyTyrTyrValIleMet >>>> Target Intro : 298 |||:!! !:!:||||||:!!! !||||||:!!|||! ! 72 bp ThrIleIleLeuCysLeuIleGluTyrTyrIleIleThr++ 228135 : ACAATAATTCTGTGCCTCATCGAGTATTACATCATAACGgt................. : 228178 299 : n 2 >>>> GluSerLysSerAsnAspIleThrAsnThrValThrTyrAlaIleLeu : 313 |||!!!!!. !!!!.!!::!!||| !.!!|||||||||:!! ||| ++GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeu 228179 : ........agGAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTA : 228293 314 : LeuThrSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaG : 333 ||| !|||!!!||||||||||||||||||||||||||||||||||||:!!||||||| LeuLeuSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaG 228294 : CTTTTATCCTTTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCG : 228353 334 : luGln >>>> Target Intron 3 >>>> CysLysLysIleGlyGluMetThr : 342 ||!!. 1889 bp |||!:!|||:!!||||||! !:!! luHis++ ++CysArgLysValGlyGluLysSer 228354 : AACACgt.........................agTGCAGAAAAGTCGGCGAAAAGTCG : 230269 343 : TyrMetThrGluTrpTyrArgLeuProGlyAsnLysLysLeuTyrCysIleMetIleI : 362 ||||||! !||||||||||||||| !!|||||||||||||||! !||||||:!!|||| TyrMetIleGluTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleI 230270 : TACATGATCGAATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCA : 230329 363 : leAlaMetSerAsnSerSerMetLysLeuThrAlaGlySerMetValGluLeuSerIl : 381 ||||||||||||||!!!|||! !|||!!!|||||||||!:!|||||||||||||||:! leAlaMetSerAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerVa 230330 : TCGCCATGTCCAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGT : 230386 382 : eGluThrPheThrAsn >>>> Target Intron 4 >>>> ValValLysThrA : 391 !.!.||||||!:!:!! 67 bp ||||||||||||: lAsnThrPheSerAsp++ ++ValValLysThrS 230387 : AAACACTTTCAGCGACgt.........................agGTCGTTAAAACGT : 230483 392 : laPheAlaPheLeuAsnValLeuArgThrMetThr : 402 !!.!.!.!|||||||||:!!|||||||||:!!||| erMetGlyPheLeuAsnMetLeuArgThrLeuThr 230484 : CCATGGGTTTCTTAAACATGCTACGAACACTGACG : 230518 vulgar: gi|383850508|ref|XP_003700837.1| 6 402 . KQ414889.1 226903 230518 + 1220 M 28 84 G 0 3 M 229 687 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226904 230518 1220 + . gene_id 3 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226904 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226904 227679 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230403 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230403 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 230404 230405 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 230404 230470 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 230469 230470 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230471 230518 . + . KQ414889.1 exonerate:protein2genome:local exon 230471 230518 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226904 230518 1220 + . alignment_id 3 ; Query gi|383850508|ref|XP_003700837.1| ; Align 226904 7 84 ; Align 226991 35 687 ; Align 228077 265 99 ; Align 228248 298 111 ; Align 230248 335 156 ; Align 230471 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 962 Query range: 0 -> 402 Target range: 208167 -> 212081 1 : MetGlnLysSerGlyLysAspSerGluTyrGluArgHisValAsnLeuSerIleGlnT : 20 |||::!:!!! ! ! :!!!!!.!.|||:!!!.! !!:!!!:!!!!!:!:!!!:: MetArgGlnIlePheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgL 208168 : ATGAGACAAATATTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTC : 208225 21 : rpAsnArgTrpLeuLeuLysProIleGlyIleTrpProHisSer<->AspMetSerAr : 38 !||| !||| !|||||| !|||||| !||||||...||| ||| ||| ! euAsnValTrpThrLeuLysIleIleGlySerTrpProArgSerIleAspArgSerTr 208226 : TGAACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTG : 208282 39 : gThrLysLysLeuTyrAspTrpPheThrTyrValValCysTyrGlyLeuIleSerPhe : 57 ! !:!!!!. ! ! !! .!! ! !!|||:!! !!:!! !!|||:!!.!!||| pLeuGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPhe 208283 : GTTAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTC : 208339 58 : LeuPheValProCysSerMetTyrValPheLeuGluValGluAspLeuTyrAsnLysI : 77 :!! ! :!!||| !.!!|||!:!!.!.!!|||! !|||||||||!!!|||:!!:!!: IleValIleProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnL 208340 : ATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAAT : 208399 78 : leLysLeuPheGlyProLeuIlePhePheLeuMetAlaPheAlaLysTyrTyrLeuLe : 96 !!|||:!!! !.!! !!|||! !||||||:!!|||||||||.!!|||||| :!!:! euLysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMe 208400 : TAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCAT : 208456 97 : uIleTyrHisGlyAsnAspIleArgGluCysIleGluArgIleLysTrpAspTrpLys : 115 !! ! !!.!! !..!|||||||||:!!|||:!!||| !:!!:!! ||||||!:! tThrValArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArg 208457 : GACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGA : 208513 116 : AsnIleThrTyrHisAspAspLysAsnIleMetLeuGluAsnAlaAsnPheGlyArgA : 135 |||:!: !:!!.!.!!:|||!:!!!.|||||||||!!:||||||!:!|||!.!|||! AsnValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgL 208514 : AACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGA : 208573 136 : rgLeuValThrValCysThrPhePheMetTyrSerGlyPheAlaSerTyrTyrIleIl : 154 :!|||:!!..!:!!||| ! !|||||||||.!!||| ||||||||| ysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAl 208574 : AACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGC : 208630 155 : eIleProIleThrIleGlyLysValLysSerGluAspGlyAsnLeuThrPheIlePro : 173 !:!:|||:!!||| !! !|||||| ..!|||! !||||||||||||!:!! ! ! aLeuProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArg 208631 : TTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGG : 208687 174 : LeuAlaPheProPheSerSerLeuIleValAspThrArgTyrSerProThrAsnGluI : 193 |||!.!!:!||| !! !!!.!!!!|||:!!|||..!||||||||||||..!||||||| LeuValTyrProValProLysPheIleLeuAspValArgTyrSerProValAsnGluI 208688 : CTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGA : 208747 194 : leIlePheSerValGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAl : 212 ||.!!!:!!!!|||||||||:!::!!||| !:!! |||..!|||||| !!.!|| lePheTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAl 208748 : TTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGC : 208804 213 : aCysGlyLeuGlyAlaMetLeuAlaValHisAlaCysGlyGlnMetGlnValLeuMet : 231 ||||||||||!.!|||:!!||||||:!!|||||||||||||||:!!|||:!!|||||| aCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMet 208805 : TTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATG : 208861 232 : AsnTrpLeuLysHisLeuAsnAspGlyArgSerAspMetGlyGluSerValAspAspA : 251 ::!|||:!!:!! ! ||| !|||||||||..!||| !! !:!!!:!:!!|||.!.| SerTrpMetGluLysLeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnA 208862 : TCCTGGATGGAGAAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGA : 208921 252 : rgIleAlaCysIleValSerGlnHisValArgIleLeu{Ly} >>>> Target In : 264 ||:!:||| !||||||..!||||||||||||:!::!!{!!} 1536 rgLeuAlaAsnIleValGluGlnHisValArgValIle{As}++ 208922 : GGTTGGCTAATATCGTGGAGCAGCATGTTCGAGTGATC{AA}gt.............. : 208964 265 : tron 1 >>>> {s}TyrLeuThrHisThrGluArgThrLeuGlnLeuIleSerPhe : 278 bp {.}!:!:!!.!!! ||||||!.! !|||!!. !||||||!!. ++{n}PheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeu 208965 : ...........ag{T}TTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTG : 210538 279 : AlaGluPheLeuGlyCysThrValAspIleCysLeuLeuGlyTyrTyrValIleMet : 298 !|||.!.:!!|||||||||:!!:!!!!:|||!!!||||||||||||..!!!:!!: IleGluMetValGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle+ 210539 : ATAGAAATGGTGGGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTg : 210598 299 : >>>> Target Intron 2 >>>> GluSerLysSerAsnAspIleThrAsnThr : 307 66 bp |||!!! ! |||!!.||| !! !!:!!:! + ++GluTrpAspSerLysAspProIleSerSer 210599 : t.........................agGAATGGGACTCTAAAGACCCTATCAGCAGT : 210691 308 : ValThrTyrAlaIleLeuLeuThrSerLeuThrPheAsnIlePheIlePheCysTyrI : 327 :!!|||||| !:!!||||||||||||:!!|||||||||||||||||||||||||||| LeuThrTyrIleValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrI 210692 : CTGACGTACATAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACA : 210751 328 : leGlyGluLeuValAlaGluGln >>>> Target Intron 3 >>>> CysLys : 336 ||||||||:!!:!!||||||||| 999 bp ! leGlyGluValLeuAlaGluGln++ ++ThrVal 210752 : TCGGTGAAGTGTTGGCTGAACAggt.........................agACAGTA : 211777 337 : LysIleGlyGluMetThrTyrMetThrGluTrpTyrArgLeuProGlyAsnLysLysL : 356 |||:!!||||||! !:!!||||||! !!!:|||||||||:!!||||||!!.||| | LysValGlyGluLysSerTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyL 211778 : AAAGTTGGAGAAAAGTCTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTT : 211837 357 : euTyrCysIleMetIleIleAlaMetSerAsnSerSerMetLysLeuThrAlaGlySe : 375 || ! !:!!!!:|||:!!||||||:!!|||!!!! |||:!!|||||||||!: euValValProLeuMetIleSerMetSerHisSerThrThrLysIleThrAlaGlyAs 211838 : TGGTCGTACCCTTGATGATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAA : 211894 376 : rMetValGluLeuSerIleGluThrPheThrAsn >>>> Target Intron 4 > : 387 !:!::!!! |||||||||...!:!||| !:!! 104 bp nLeuIleValLeuSerIleSerSerPheGlyAsp++ 211895 : TCTCATCGTTCTTTCAATCAGTAGTTTCGGTGACgt...................... : 211932 388 : >>> ValValLysThrAlaPheAlaPheLeuAsnValLeuArgThrMetThr : 402 |||:!!||||||:!! ! .!!!:!||||||:!!|||||||||.!.||| ++ValIleLysThrSerValThrTyrLeuAsnMetLeuArgThrPheThr 211933 : ...agGTTATCAAGACTTCGGTAACATACTTGAACATGCTACGAACATTCACA : 212081 vulgar: gi|383850508|ref|XP_003700837.1| 0 402 . KQ414889.1 208167 212081 + 962 M 34 102 G 0 3 M 229 687 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 995 3 0 2 M 52 156 5 0 2 I 0 100 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208168 212081 962 + . gene_id 4 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208168 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208168 208961 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211929 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 211930 211931 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 211930 212033 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 212032 212033 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 212034 212081 . + . KQ414889.1 exonerate:protein2genome:local exon 212034 212081 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208168 212081 962 + . alignment_id 4 ; Query gi|383850508|ref|XP_003700837.1| ; Align 208168 1 102 ; Align 208273 35 687 ; Align 210499 265 99 ; Align 210664 298 111 ; Align 211774 335 156 ; Align 212034 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 943 Query range: 6 -> 266 Target range: 221351 -> 222134 7 : AspSerGluTyrGluArgHisValAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuL : 26 !!:! !!!:|||:!!! !:!!|||!!.||||||:!:|||! !!:!||||||:!!|||| GluTyrAspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuL 221352 : GAATACGATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGA : 221409 27 : ysProIleGlyIleTrpProHisSer<->AspMetSerArgThrLysLysLeuTyrAs : 44 |||||||||||:!!||||||:!!||| :!!!!:|||! !..!:!!!:!! ! ! ! ysProIleGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTy 221410 : AGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTA : 221466 45 : pTrpPheThrTyrValValCysTyrGlyLeuIleSerPheLeuPheValProCysSer : 63 !|||.!.! ! !!||||||||||||.!!||||||!!!||||||!!.|||||||||||| rTrpLeuIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSer 221467 : CTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGC : 221523 64 : MetTyrValPheLeuGluValGluAspLeuTyrAsnLysIleLysLeuPheGlyProL : 83 :!:||||||.!!|||||||||||||||:!!||||||!:!|||||||||!!.||||||| LeuTyrValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProL 221524 : CTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGT : 221583 84 : euIlePhePheLeuMetAlaPheAlaLysTyrTyrLeuLeuIleTyrHisGlyAsnAs : 102 ||! !|||! !:!!||||||||| !||||||:!!||||||||| !:!!! !||||| euSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAs 221584 : TGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGA : 221640 103 : pIleArgGluCysIleGluArgIleLysTrpAspTrpLysAsnIleThrTyrHisAsp : 121 |||||||||||||||||||||||||:!!|||||||||||||||||||||||| ! ! pIleArgGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLys 221641 : CATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAG : 221697 122 : AspLysAsnIleMetLeuGluAsnAlaAsnPheGlyArgArgLeuValThrValCysT : 141 ||||||:!!||||||:!!|||||||||! !|||||||||||||||:!!! !:!!|||| AspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysT 221698 : GATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCA : 221757 142 : hrPhePheMetTyrSerGlyPheAlaSerTyrTyrIleIleIleProIleThrIleGl : 160 |||||||||||||||||||||||... ||||||||| !||||||.!!!:!:!:|| hrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGl 221758 : CATTTTTCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGG : 221814 161 : yLysValLysSerGluAspGlyAsnLeuThrPheIleProLeuAlaPheProPheSer : 179 ||||:!! :!!:!!||| |||:::||||||||||||:!!!.!|||||||||||| yLysIleProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSer 221815 : TAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCG : 221871 180 : SerLeuIleValAspThrArgTyrSerProThrAsnGluIleIlePheSerValGlnL : 199 !!!!!!||||||||||||||||||||||||..!|||||||||:!:||||||:!!|||: ArgPheIleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnI 221872 : AGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAA : 221931 200 : euIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysGlyLeuGlyAlaMe : 218 !!!!:||||||||||||||||||.!!||||||||||||||||||.!!|||! !||||| leMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMe 221932 : TTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTAT : 221988 219 : tLeuAlaValHisAlaCysGlyGlnMetGlnValLeuMetAsnTrpLeuLysHisLeu : 237 |!!!||||||||||||||||||||||||||||||||||||!:!||||||||||||||| tPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeu 221989 : GTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTG : 222045 238 : AsnAspGlyArgSerAspMetGlyGluSerValAspAspArgIleAlaCysIleValS : 257 ! !:!!||||||:!!|||||| !!.!.!:!|||||| ||||||||| ||||||! IleAsnGlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValA 222046 : ATCAACGGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGA : 222105 258 : erGlnHisValArgIleLeuLysTyrLeu : 266 :!||||||||||||||||||:!!|||:!! snGlnHisValArgIleLeuGlnTyrVal 222106 : ATCAACACGTTCGAATATTGCAGTATGTA : 222134 vulgar: gi|383850508|ref|XP_003700837.1| 6 266 . KQ414889.1 221351 222134 + 943 M 28 84 G 0 3 M 232 696 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221352 222134 943 + . gene_id 5 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221352 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221352 222134 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221352 222134 943 + . alignment_id 5 ; Query gi|383850508|ref|XP_003700837.1| ; Align 221352 7 84 ; Align 221439 35 696 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 707 Query range: 7 -> 402 Target range: 256628 -> 258738 8 : SerGluTyrGluArgHisValAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysP : 27 !!!.!.!:!:!!!!!:!! !:!!! !|||:!!|||! !|||||||||!!!||||||| ThrAsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysP 256629 : ACGAATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAAC : 256686 28 : roIleGlyIleTrpProHisSerAspMetSerArgThr<->LysLysLeuTyrAspTr : 45 |||||||| !||||||! !|||... !!!! !||| :!!::! ! !... roIleGlyAlaTrpProProSerSerSerThrThrThrLeuGluArgAsnValSerIl 256687 : CTATAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGAT : 256743 46 : pPheThrTyrValValCysTyrGlyLeuIleSerPheLeuPheValProCysSerMet : 64 !! ! !!:!!||||||||||||! !|||! !||| !!!.:!!||||||! !:!: eValLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIleProCysLeuLeu 256744 : CGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTC : 256800 65 : TyrValPheLeuGluValGluAspLeuTyrAsnLysIleLysLeuPheGlyProLeuI : 84 :!!|||||||||!!:! !!!:..!!!!||| |||:::||| |||||||||:!!! HisValPheLeuAspAspAspSerPheTyrMetLysValLysAsnPheGlyProMetS 256801 : CATGTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGA : 256860 85 : lePhePheLeuMetAlaPheAlaLysTyrTyrLeuLeuIleTyrHisGlyAsnAspIl : 103 ! !!:::!!!!:::!! !|||!!.||| ||||||:!:! !!.|||!!.||||| erHisTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIl 256861 : GCCATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACAT : 256917 104 : eArgGluCysIleGluArgIleLysTrpAspTrpLysAsnIleThrTyrHisAspAsp : 122 |||| ! |||:!!|||!.!|||:!! !||||||!:!! :!:! ! .!. ! ||| eArgTyrCysValGluHisIleGluThrAspTrpArgMetValArgArgGluLysAsp 256918 : ACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGAT : 256974 123 : LysAsnIleMetLeuGluAsnAlaAsnPheGlyArgArgLeuValThrValCysThrP : 142 :!!.!.:!:|||:!!:!!||||||!..||||||||| !:!!!.!||| !!|||.!! GlnGlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaA 256975 : CAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAG : 257034 143 : hePheMetTyrSerGlyPheAlaSerTyrTyrIleIleIleProIleThrIleGlyLy : 161 !.!!||| ! |||||| ::::::::: !!:!:!.!! ! !! laIleMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAsnThrGluIl 257035 : CTATCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGAT : 257091 162 : sValLysSerGluAspGlyAsnLeuThrPheIleProLeuAlaPheProPheSerSer : 180 !:!! ! !! !:!!! !!.. !! ! ! ! !||| !! !! !! ! ! !!.! eIleHisValGlyAsnGluThrThrIleValArgValLeuProValThrValTyrLys 257092 : AATTCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAG : 257148 181 : LeuIleValAspThrArgTyrSerProThrAsnGluIleIlePheSerValGlnLeuI : 200 !:!::!!:!!..! ! ! ||||||||||||||||||:!: !!! !:!!||| ! LysLeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheMetGlnThrT 257149 : AAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTT : 257208 201 : leAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysGlyLeuGlyAlaMetLe : 219 :!!..! !:!! ! ! !! !||| !::! !! !.!!|||!.!|||:!:!! rpSerSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAlaAlaValPh 257209 : GGTCGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTT : 257265 220 : uAlaValHisAlaCysGlyGlnMetGlnValLeuMetAsnTrpLeu<->LysHisLeu : 237 !|||..!||||||! !||||||:!! |||||||||:::|||:!! :!! !:!! eAlaThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGluPheVal 257266 : TGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTG : 257322 238 : AsnAspGlyArgSerAspMetGlyGluSerValAspAspArgIleAlaCysIleValS : 257 |||!!:..!|||!:! ! ! !:!|||!.! ||||||. AsnGluSerArgAsnArgGluLysThrPheProPheLysGlnIleGlyValIleValG 257323 : AATGAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGG : 257382 258 : erGlnHisValArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}Ty : 265 .!!!.|||:!!|||:!:|||{!.} 76 bp {.}!: luHisHisLeuArgValLeu{Se}++ ++{r}Ph 257383 : AGCATCATTTAAGAGTGCTG{AG}gt.........................ag{T}TT : 257482 266 : rLeuThrHisThrGluArgThrLeuGlnLeuIleSerPheAlaGluPheLeuGlyCys : 284 !:!!:!!:!!! !|||..!..!:!!.!.! !|||!!!||| !|||!!.!!! !!||| eIleSerTyrIleGluGluValMetAsnArgIleCysPheLeuGluLeuPheArgCys 257483 : CATATCATATATCGAGGAAGTGATGAACCGAATATGTTTTTTAGAGTTGTTTAGATGC : 257539 285 : ThrValAspIleCysLeuLeuGlyTyrTyrValIleMet >>>> Target Intro : 298 |||:!!! !||||||:!!||||||||||||:!!:!! ! 684 bp ThrLeuAlaIleCysMetLeuGlyTyrTyrIleLeuAla++ 257540 : ACGCTGGCTATATGCATGCTGGGATACTACATTCTTGCGgt................. : 257583 299 : n 2 >>>> GluSerLysSerAsnAspIleThrAsnThrValThrTyrAlaIleLeu : 313 |||!!!...!!!...|||||| ||| :::||| !!!::!! ++GluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheMetIle 257584 : ........aggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTATGATA : 258310 314 : LeuThrSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaG : 333 |||! !||||||:::||||||||||||:::...|||||||||||||||:!!:!!.!!| LeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrG 258311 : CTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATTAACAG : 258370 334 : luGln >>>> Target Intron 3 >>>> CysLysLysIleGlyGluMetThr : 342 ||||| 90 bp |||||||||:!!|||!!::!!..! luGln++ ++CysLysLysValGlyAspValVal 258371 : AACAGgt.........................agTGCAAGAAAGTTGGCGACGTGGTT : 258487 343 : TyrMetThrGluTrpTyrArgLeuProGlyAsnLysLysLeuTyrCysIleMetIleI : 362 |||||||||!!:|||||| !||||||! !!!.!:!! !||| !!! |||:!!:!!| TyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLeuValI 258488 : TATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTTGGTAA : 258547 363 : leAlaMetSerAsnSerSerMetLysLeuThrAlaGlySerMetValGluLeuSerIl : 381 ||||| |||!:! ! !:!::!!:!!|||||||||...... ...::!||||| leAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePheHisMetSerIl 258548 : TCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatGTCCAT : 258604 382 : eGluThrPheThrAsn >>>> Target Intron 4 >>>> ValValLysThrA : 391 | ! ||||||!:!:!! 69 bp |||:!!||||||: eTyrThrPheSerAsp++ ++ValIleLysThrS 258605 : TTACACATTCAGCGATgt.........................agGTAATAAAAACCT : 258703 392 : laPheAlaPheLeuAsnValLeuArgThrMetThr : 402 !!||||||!:!||||||:!!|||||| !:!::!! erPheAlaTyrLeuAsnLeuLeuArgGlnValSer 258704 : CTTTCGCGTATTTGAATTTACTGCGTCAAGTATCG : 258738 vulgar: gi|383850508|ref|XP_003700837.1| 7 402 . KQ414889.1 256628 258738 + 707 M 32 96 G 0 3 M 195 585 G 0 3 M 29 87 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256629 258738 707 + . gene_id 6 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256629 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256629 257404 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256629 258738 707 + . alignment_id 6 ; Query gi|383850508|ref|XP_003700837.1| ; Align 256629 8 96 ; Align 256728 40 585 ; Align 257316 235 87 ; Align 257482 265 99 ; Align 258265 298 111 ; Align 258466 335 156 ; Align 258691 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 650 Query range: 3 -> 387 Target range: 284487 -> 287222 4 : SerGlyLysAspSerGluTyrGluArgHisValAsnLeuSerIleGlnTrpAsnArgT : 23 |||..!! |||||| !!::!!:! ! !! !! ! !|||:!!||| !||||||| SerSerThrAspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgT 284488 : TCTTCAACCGATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTT : 284545 24 : rpLeuLeuLysProIleGlyIleTrpProHisSer<->AspMetSerArgThrLysLy : 41 ||!!!|||||||||||||||:!!||||||! !||| !:!!!!!! ! !:!!|| rpPheLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLy 284546 : GGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAA : 284602 42 : sLeuTyrAspTrpPheThrTyrValValCysTyrGlyLeuIleSerPheLeuPheVal : 60 |:!! !..! ! !! ! :!!:!! !!! ! !||||||.!!||||||!!.||| sIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuVal 284603 : GATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTA : 284659 61 : ProCysSerMetTyrValPheLeuGlu<->ValGluAspLeuTyrAsnLysIleLysL : 79 ||||||:!!:!!! !..! ! |||!!: ..!! |||||| !!!..|||||||||: ProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysM 284660 : CCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAA : 284719 80 : euPheGlyProLeuIlePhePheLeuMetAlaPheAlaLysTyrTyrLeuLeuIleTy : 98 !!.!!|||||||||! !|||! !:!!|||||| !|||||||||:!!||||||! etIleGlyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSe 284720 : TGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTC : 284776 99 : rHisGlyAsnAspIleArgGluCysIleGluArgIleLysTrpAspTrpLysAsnIle : 117 !.!|||..! ! ||| !!:!!|||:!::!! !|||::: !||||||... !! rArgGlyGlyLysIleGlyGlnCysValLysAspIleArgAlaAspTrpSerLeuThr 284777 : GCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACG : 284833 118 : ThrTyrHis<-><-><->AspAspLysAsnIleMetLeuGluAsnAlaAsnPheGlyA : 134 !! ||| :::::::::...|||||| !!!:!:!|||!...!!|||| LeuSerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyA 284834 : CTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGAC : 284893 135 : rgArgLeuValThrValCysThrPhePheMetTyrSerGlyPheAlaSerTyrTyrIl : 153 || !|||!.!! ! !!|||.!! !||||||||||||||| !! !||| !! rgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrTh 284894 : GATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCAC : 284950 154 : eIleIleProIleThrIleGlyLysValLysSerGluAspGlyAsnLeuThrPheIle : 172 :!:!!:|||:!: !! !! !:::..!:!!! ! ||| ||| !||| ! ! ! rValMetProLeuCysThrValArgThrGluIleIleAsp---AsnGluThrValArg 284951 : GGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGAC---AACGAGACCGTGAGA : 285004 173 : ProLeuAlaPheProPheSerSerLeuIleValAspThrArgTyrSerProThrAsnG : 192 !!! !|||||||||.!!! ! !! !:!!:!!||| !!||| !||||||:!! !| SerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheG 285005 : TCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCG : 285064 193 : luIleIlePheSerValGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAl : 211 |||||:!: ! !:!!|||! !:!:|||!.! !:!!!!::!!..!:!!||| !!. luIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGl 285065 : AGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGG : 285121 212 : aAlaCysGlyLeuGlyAlaMetLeuAlaValHisAlaCysGlyGlnMetGlnValLeu : 230 !||||||.!!|||!.!|||:!!!!!!.!:!!|||!.!|||||||||.!.::!:!!||| yAlaCysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeu 285122 : AGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTT : 285178 231 : MetAsnTrpLeuLysHisLeuAsnAspGly<->ArgSerAspMetGlyGluSerVal< : 249 :!!!.. !||| ! ! ||| !|||||| !:!.!! ! !||| !|||..! ValThrLysLeuAspLysLeuValAspGlyValLysGlyArgLysGlyLeuSerThrH 285179 : GTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGC : 285238 250 : ->AspAspArgIleAlaCysIleValSerGlnHisValArgIleLeu{Ly} >>>> : 264 !!:.!.|||:!:!.! !|||:!!..!!!.|||:!!!:!||||||{ } isGluGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 285239 : ATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt..... : 285290 265 : Target Intron 1 >>>> {s}TyrLeuThrHisThrGluArgThrLeuGlnLeu : 275 1411 bp { }!:!:!!:!!!!.! !||| !! !|||.!. ! ++{y}PheIleSerGlnIleGluGlyLeuLeuAsnGlu 285291 : ....................ag{T}TTTATATCGCAAATCGAGGGGCTCCTAAACGAA : 286730 276 : IleSerPheAlaGluPheLeuGlyCysThrValAspIleCysLeuLeuGlyTyrTyrV : 295 |||!!!|||!.!||| ! :!!|||||||||:!!:!!||||||!!!||||||||||||: IleCysPheValGluValIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrL 286731 : ATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGGGATATTATT : 286790 296 : alIleMet >>>> Target Intron 2 >>>> GluSerLysSerAsnAspIle : 304 !!:!:! ! 80 bp |||!!!:!!..!!:!!!:! ! euLeuThr++ ++GluTrpGluGlnSerGluThr 286791 : TACTGACGgt.........................agGAATGGGAGCAAAGTGAAACT : 286897 305 : ThrAsnThrValThrTyrAlaIleLeuLeuThrSerLeuThrPheAsnIlePheIleP : 324 ! !...|||:!!||||||..!! ||||||..!|||!!!|||||||||:!!||||||. IleGlyThrIleThrTyrCysThrLeuLeuValSerPheThrPheAsnValPheIleL 286898 : ATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATAC : 286957 325 : heCysTyrIleGlyGluLeuValAlaGluGln >>>> Target Intron 3 >>> : 335 !!|||||||||||||||:!!:!!:!!|||||| 74 bp euCysTyrIleGlyGluIleLeuSerGluGln++ 286958 : TCTGTTACATCGGTGAAATTCTCTCCGAACaggt........................ : 286992 336 : > CysLysLysIleGlyGluMetThrTyrMetThrGluTrpTyrArgLeuProGlyA : 353 ||| !|||:!!||| ! |||||||||! !!!:||||||||||||||||||! ++CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyL 286993 : .agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAA : 287118 354 : snLysLysLeuTyrCysIleMetIleIleAlaMetSerAsnSerSerMetLysLeuTh : 372 !.! ! ! ! !! |||:!!|||.!!|||:!!||||||||||||!!:|||||||| ysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuTh 287119 : AAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAAC : 287175 373 : rAlaGlySerMetValGluLeuSerIleGluThrPheThrAsnVal : 387 |||||||!.!!!::!!!!:||||||:!!...!:!||| !!:!||| rAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSerVal 287176 : AGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTG : 287222 vulgar: gi|383850508|ref|XP_003700837.1| 3 387 . KQ414889.1 284487 287222 + 650 M 31 93 G 0 3 M 35 105 G 0 3 M 51 153 G 0 9 M 46 138 G 1 0 M 73 219 G 0 3 M 8 24 G 0 3 M 15 45 S 0 2 5 0 2 I 0 1407 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284488 287222 650 + . gene_id 7 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284488 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284488 285287 . + . insertions 21 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286698 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287222 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287222 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284488 287222 650 + . alignment_id 7 ; Query gi|383850508|ref|XP_003700837.1| ; Align 284488 4 93 ; Align 284584 35 105 ; Align 284692 70 153 ; Align 284854 121 138 ; Align 284992 168 219 ; Align 285214 241 24 ; Align 285241 249 45 ; Align 286700 265 99 ; Align 286879 298 111 ; Align 287064 335 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 596 Query range: 3 -> 402 Target range: 278540 -> 280551 4 : SerGlyLysAspSerGluTyrGluArgHisValAsnLeuSerIleGlnTrpAsnArgT : 23 |||..!! |||||| !!::.!.! ! !! !! ! !|||:!!||| !||||||| SerSerThrAspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgT 278541 : TCGTCAACCGATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTT : 278598 24 : rpLeuLeuLysProIleGlyIleTrpProHisSer<->AspMetSerArgThrLysLy : 41 ||!!!|||||||||||||||:!!||||||! !||| !:!!!!!! ! !:!!|| rpPheLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLy 278599 : GGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAA : 278655 42 : sLeuTyrAspTrpPheThrTyrValValCysTyrGlyLeuIleSerPheLeuPheVal : 60 |:!! !..! ! !! ! :!!:!! !!! ! !||||||.!!||||||!!.||| sIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuVal 278656 : GATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTA : 278712 61 : ProCysSerMetTyrValPheLeuGlu<->ValGluAspLeuTyrAsnLysIleLysL : 79 ||||||:!!:!!! !..! ! |||!!: ..!! |||||| !!!..|||||||||: ProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysM 278713 : CCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAA : 278772 80 : euPheGlyProLeuIlePhePheLeuMetAlaPheAlaLysTyrTyrLeuLeuIleTy : 98 !!.!!|||||||||! !|||! ! !|||||| !|||||||||:!!|||!!:! etIleGlyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSe 278773 : TGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTC : 278829 99 : rHisGlyAsnAspIleArgGluCysIleGluArgIleLysTrpAspTrpLys<->Asn : 116 !.!|||..! ! ||| !!:!!|||:!:.!. !|||::: !||||||... !.. rArgGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThr 278830 : GCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACA : 278886 117 : IleThrTyr<-><->HisAspAspLysAsnIleMetLeuGluAsnAlaAsnPheGlyA : 134 :!!:!!||| ...:::::::::...|||||| !!!:!:!|||!...!!|||| LeuSerTyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyA 278887 : CTTTCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGAC : 278946 135 : rgArgLeuValThrValCysThrPhePheMetTyrSerGlyPheAlaSerTyrTyrIl : 153 || !|||!.!! ! !! !!.!! !||||||||||||||| !.!! !||| ! rgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAl 278947 : GATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGC : 279003 154 : eIleIleProIleThrIleGlyLysValLysSerGluAspGlyAsnLeuThrPheIle : 172 !:!:!!:|||:!: ! !! !:::..!:!!! ! ||| ||| !||| ! ! ! aValMetProLeuPheAlaValArgThrGluIleIleAsp---AsnGluThrValArg 279004 : CGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGAC---AATGAAACGGTGAGA : 279057 173 : ProLeuAlaPheProPheSerSerLeuIleValAspThrArgTyrSerProThrAsnG : 192 !!! !|||||||||.!!! ! !! !:!!:!!||| !!||| !||||||:!! !| SerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheG 279058 : TCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCG : 279117 193 : luIleIlePheSerValGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAl : 211 |||||:!: ! !:!!|||! !:!:|||!.! !:!!:!::!!..!:!!||| !!. luIleValGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGl 279118 : AGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGG : 279174 212 : aAlaCysGlyLeuGlyAlaMetLeuAlaValHisAlaCysGlyGlnMetGlnValLeu : 230 !||||||.!!||| !|||:!!!!!!.!:!!|||!.!|||||||||.!.::!:!!||| yAlaCysSerLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeu 279175 : AGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTT : 279231 231 : MetAsnTrpLeuLysHisLeuAsnAspGlyArgSerAspMetGly<-><->GluSerV : 248 :!!!.. !||| ! ! |||! !|||||| !!.!! ! ! ! ...!!! ValThrLysLeuAspLysLeuIleAspGlyValLysGlyArgLysSerLeuSerThrH 279232 : GTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGC : 279291 249 : alAspAspArgIleAlaCysIleValSerGlnHisValArgIleLeu{Ly} >>>> : 264 !!!:.!.|||:!:!.! !|||:!!..!!!.|||:!!!:!||||||{ } isGluGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 279292 : ATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt..... : 279343 265 : Target Intron 1 >>>> {s}TyrLeuThrHisThrGluArgThrLeuGlnLeu : 275 657 bp {!}! !!!|||||| !.!.||| .!. ! +-{y}LeuPheThrHisGlyAsnArg------AspAsp 279344 : ....................at{A}TTATTTACTCACGGTAACAGA------GACGAC : 280023 276 : IleSerPheAlaGluPheLeuGlyCysThrValAspIleCysLeuLeuGlyTyrTyrV : 295 :!!!!!!:! !.!..!!:!! !...! !:!!! .!! !:!!! !..!! ! | LeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerLeuSerV 280024 : TTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGTTGTCAG : 280083 296 : alIleMetGluSerLysSerAsnAspIleThrAsnThrValThrTyrAlaIleLeuLe : 314 ||.!! !|||!!!:!!..!|||||| !! !...||| !!|||||| !!!:!!!|| alPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLe 280084 : TTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCT : 280140 315 : uThrSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGlu : 333 |! !|||||||||||||||:!!||||||.!!|||||||||||||||:!!:!!:!!||| uIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGlu 280141 : CATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAA : 280197 334 : Gln >>>> Target Intron 2 >>>> CysLysLysIleGlyGluMetThrTy : 343 ||| 74 bp ||| !|||:!!|||! ! ||||| Gln++ ++CysLeuLysValGlyValSerThrTy 280198 : Caggt.........................agTGCTTAAAAGTCGGCGTGTCAACTTA : 280301 344 : rMetThrGluTrpTyrArgLeuProGlyAsnLysLysLeuTyrCysIleMetIleIle : 362 ||||! !!!:||||||||||||||||||!!.||| !! ! !! |||:!!|||.!! rMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePhe 280302 : CATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTC : 280358 363 : AlaMetSerAsnSerSerMetLysLeuThrAlaGlySerMetValGluLeuSerIleG : 382 |||:!!||||||||||||!!:|||||||||||||||!.!!!::!!!!:||||||:!!. AlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuS 280359 : GCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAA : 280418 383 : luThrPheThrAsn >>>> Target Intron 3 >>>> ValValLysThrAla : 391 ..!:!||| !!:! 71 bp |||:!!||||||||| erSerPheCysSer++ ++ValLeuLysThrAla 280419 : GCAGCTTCTGCAGCgt.........................agGTGTTAAAAACGGCA : 280516 392 : PheAlaPheLeuAsnValLeuArgThrMetThr : 402 ||||||!:!|||!:!:!!|||||||||:!:||| PheAlaTyrLeuSerLeuLeuArgThrLeuThr 280517 : TTCGCATATCTGAGCTTATTACGTACGCTTACC : 280551 vulgar: gi|383850508|ref|XP_003700837.1| 3 402 . KQ414889.1 278540 280551 + 596 M 31 93 G 0 3 M 35 105 G 0 3 M 46 138 G 0 3 M 4 12 G 0 6 M 47 141 G 1 0 M 78 234 G 0 6 M 18 54 S 0 2 5 0 2 I 0 653 3 0 2 S 1 1 M 7 21 G 2 0 M 61 183 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278541 280551 596 + . gene_id 8 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278541 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278541 279340 . + . insertions 21 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279997 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279996 279997 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 279998 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 279998 280202 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280551 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278541 280551 596 + . alignment_id 8 ; Query gi|383850508|ref|XP_003700837.1| ; Align 278541 4 93 ; Align 278637 35 105 ; Align 278745 70 138 ; Align 278886 116 12 ; Align 278904 120 141 ; Align 279045 168 234 ; Align 279285 246 54 ; Align 279999 265 21 ; Align 280020 274 183 ; Align 280277 335 156 ; Align 280504 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 535 Query range: 14 -> 337 Target range: 262846 -> 264657 15 : AsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProIleGlyIleTrpProHisS : 34 :!!! !|||:!:||| ||||||||||||||||||||||||||| !||||||! | AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 35 : er<->AspMetSerArgThrLysLysLeuTyrAspTrpPheThrTyrValValCysTy : 52 || ...!!:||||||! !:!!::!:!! ! !::.!! ! !||||||||||| erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 53 : rGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeuGluValGlu : 71 | !!|||||| !! ! ! !!:!!|||! !! !:!::!!:!! !!||||||!.!||| rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 72 : AspLeuTyrAsnLysIleLysLeuPheGlyProLeuIlePhePheLeuMetAlaPheA : 91 :!!!!!:!!! |||:!::!!:!!.!!||||||||| ! !::!!!:!:!.!.!. AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 92 : laLysTyrTyrLeuLeuIleTyrHisGlyAsnAspIleArgGluCysIleGluArgIl : 110 !!!.||| !! !|||:!: !|||.!!!!.||||||!:!! |||:!::!!!.!:! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 111 : eLysTrpAspTrpLysAsnIleThrTyrHisAspAspLysAsnIleMetLeuGluAsn : 129 ::!! |||||| ! !:!:||| !!:|||:!!..!|||||||||:!!||| lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 130 : AlaAsnPheGlyArgArgLeuValThrValCysThrPhePheMetTyrSerGlyPheA : 149 |||!!.!:!|||||| !:!!!.!.!! !|||.!!.!!|||||| ! !!!.!!.!! AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 150 : laSerTyrTyrIleIleIleProIleThrIleGlyLysValLysSerGluAspGlyAs : 168 !!!! ! ! !:!!:!!! ! !!.!!|||! ! ! !:!!:!!..!! :!!! !!. etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 169 : nLeuThrPheIleProLeuAlaPheProPheSerSerLeuIleValAspThrArgTyr : 187 ! !! !.!. ! !||| !!! !||| ! ! !!.! !|||:!! ..! ! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 188 : SerProThrAsnGluIleIlePheSerValGlnLeuIleAlaGlyAlaLeuMetHisG : 207 !:!|||||||||||||||.!!.!!:!!..!|||!!!:!::!!||| !:!!:!: !! AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 208 : lyIleThrSerAlaAlaCysGlyLeuGlyAlaMetLeuAlaValHisAlaCysGlyGl : 226 .!! !||| !!.!|||! !|||:!! !|||:!!!!!|||! !|||||||||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 227 : nMetGlnValLeuMetAsnTrpLeu<->LysHisLeuAsnAspGlyArgSerAspMet : 244 |:!!.!.|||||||||::!|||:!! :!! !:!!|||.!...!|||..!!!:! nLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsn 263484 : GTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAAT : 263540 245 : GlyGluSerValAspAspArgIleAlaCysIleValSerGlnHisValArgIleLeu{ : 264 !.!. ! ! ! !..!|||!.! ||||||..!!!.|||:!!|||:!!|||{ LysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeu{ 263541 : AAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTG{ : 263600 265 : Ly} >>>> Target Intron 1 >>>> {s}TyrLeuThrHisThrGluArgTh : 272 !.} 72 bp {.}!:!:!! !!.!! !:!!!.!.. Se}++ ++{r}PheIleAspArgIleLysAsnVa 263601 : AG}gt.........................ag{T}TTCATAGATCGTATTAAGAATGT : 263696 273 : rLeuGlnLeuIleSerPheAlaGluPheLeuGlyCysThrValAspIleCysLeuLeu : 291 !:!!... !|||!!!|||!.!|||!!.!!! !..!|||:!!|||||||||:!!||| lMetSerThrIleCysPheValGluLeuPheLysAlaThrLeuAspIleCysMetLeu 263697 : GATGAGTACGATATGTTTCGTGGAGTTATTCAAGGCTACGCTGGATATATGCATGCTA : 263753 292 : GlyTyrTyrValIleMet >>>> Target Intron 2 >>>> GluSerLysSe : 301 |||||||||:!!:!!! ! 764 bp |||!!!:!!|| GlyTyrTyrIleLeuThr++ ++GluTrpGluSe 263754 : GGTTACTACATACTTACGgt.........................agGAATGGGAAAG : 264547 302 : rAsnAspIleThrAsnThrValThrTyrAlaIleLeuLeuThrSerLeuThrPheAsn : 320 |:!:|||||| ||| ..!|||||| !!!::!!|||! !|||:!! ! !||| rHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerMetCysGlyAsn 264548 : TCAtgatattcaaaatttgacTACATATTTCATGATACTGATATCAATGTGCGGCAAC : 264604 321 : IlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlnCysLysLys : 337 ||||||:!!.!.|||||||||||||||:!!:!!.!!|||||| ||| IlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGlnValIleLys 264605 : ATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcaggtaattaaa : 264657 vulgar: gi|383850508|ref|XP_003700837.1| 14 337 . KQ414889.1 262846 264657 + 535 M 20 60 G 0 3 M 200 600 G 0 3 M 29 87 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 33 99 5 0 2 I 0 760 3 0 2 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 264657 535 + . gene_id 9 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262847 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263601 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 263673 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263672 263673 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 263674 263773 . + . KQ414889.1 exonerate:protein2genome:local exon 263674 263773 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263774 263775 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263774 264537 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264536 264537 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264538 264657 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264657 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262847 264657 535 + . alignment_id 9 ; Query gi|383850508|ref|XP_003700837.1| ; Align 262847 15 60 ; Align 262910 35 600 ; Align 263513 235 87 ; Align 263675 265 99 ; Align 264538 298 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 472 Query range: 14 -> 296 Target range: 266634 -> 267555 15 : AsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProIleGlyIleTrpProHisS : 34 :!!! !|||:!:|||! !|||||||||!!!||||||||||||||| !||||||! ! AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProL 266635 : GATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGT : 266692 35 : erAspMet<->SerArgThrLysLysLeuTyrAspTrpPheThrTyrValValCysTy : 52 !...:!: |||!:! !:!!::!:!! !..!!:: ! ! !|||:!!||||| euSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266693 : TGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 53 : rGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeuGluValGlu : 71 | !!! !||| !||| ! ! :!!||||||! !.!.:!!:!! !!||||||! !||| rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 72 : AspLeuTyrAsnLysIleLysLeuPheGlyProLeuIlePhePheLeuMetAlaPheA : 91 ..!:!! !!..|||:!:|||:!!||||||||||||! ! !!::!!!:!:!.! SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 92 : laLysTyrTyrLeuLeuIleTyrHisGlyAsnAspIleArgGluCysIleGluArgIl : 110 !!!.||| ! !|||:!: !.!.!!!!.!!:||||||! |||:!!|||!.!!! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 111 : eLysTrpAspTrpLysAsnIleThrTyrHisAspAspLysAsnIleMetLeuGluAsn : 129 ::!! ||||||!:!! !:!:||| ! !!:||||||.!.:!:||||||:!!||| tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 130 : AlaAsnPheGlyArgArgLeuValThrValCysThrPhePheMetTyrSerGlyPheA : 149 |||!...!!|||||| !:!!!.!! ! !!|||.!! |||||| ! !!!||| !! AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 150 : laSerTyrTyrIleIleIleProIleThrIleGlyLysValLysSerGluAspGlyAs : 168 !.!!|||! !:!:|||! !!.!!|||!!: !! |||:!! !! :!!! !!. euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 169 : nLeuThrPheIleProLeuAlaPheProPheSerSerLeuIleValAspThrArgTyr : 187 ! !! ! ! !! !||| !!! ! !! !!! !!.! !!!::!!! ..! ! ! rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 188 : SerProThrAsnGluIleIlePheSerValGlnLeuIleAlaGlyAlaLeuMetHisG : 207 ||||||||||||||||||:!!.!! ! !|||!!!:!!:!!||| !:!!:!!:!!. SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 208 : lyIleThrSerAlaAlaCysGlyLeuGlyAlaMetLeuAlaValHisAlaCysGlyGl : 226 .!! !..! !!.!|||! !.!!|||!.!|||:!!!!!|||!.!|||||||||||||| erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 227 : nMetGlnValLeuMetAsnTrpLeuLysHisLeuAsnAspGlyArgSerAspMetGly : 245 |:!!...|||||||||! |||:!!|||.!.!!! :!! !! !!!!|||! ..! nLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsn 267272 : GCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAAT : 267328 246 : GluSerVal<->AspAspArgIleAlaCysIleValSerGlnHisValArgIleLeu{ : 264 :!!!:!||| !|||!:!|||!.! :!!|||..!!!.|||:!!|||:!!|||{ LysAsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{ 267329 : AAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{ : 267388 265 : Ly} >>>> Target Intron 1 >>>> {s}TyrLeuThrHisThrGluArgTh : 272 !.} 69 bp {.}!:!:!!.!!!.!! !|||!!!.. Se}++ ++{r}PheIleAlaArgIleGluSerVa 267389 : AG}gt.........................ag{C}TTCATAGCACGTATCGAAAGTGT : 267481 273 : rLeuGlnLeuIleSerPheAlaGluPheLeuGlyCysThrValAspIleCysLeuLeu : 291 !:!!... !|||!!!||| !|||!!.!!! !||||||:!!|||||||||:!!||| lMetSerGluIleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeu 267482 : AATGAGCGAAATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTT : 267538 292 : GlyTyrTyrValIle : 296 .!!||||||:!!:!! SerTyrTyrIleLeu 267539 : AGCTATTATATCCTT : 267555 vulgar: gi|383850508|ref|XP_003700837.1| 14 296 . KQ414889.1 266634 267555 + 472 M 22 66 G 0 3 M 212 636 G 0 3 M 15 45 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266635 267555 472 + . gene_id 10 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266635 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266635 267389 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267555 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266635 267555 472 + . alignment_id 10 ; Query gi|383850508|ref|XP_003700837.1| ; Align 266635 15 66 ; Align 266704 37 636 ; Align 267343 249 45 ; Align 267460 265 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 460 Query range: 11 -> 267 Target range: 232447 -> 233218 12 : ArgHisValAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProIleGlyIleT : 31 ||| !! !.!.! !||||||||| !|||||||||!!!|||! !|||!!:||| !| ArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaT 232448 : CGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCAT : 232505 32 : rpProHis<->SerAspMetSerArgThrLysLysLeuTyrAspTrpPheThrTyrVa : 49 |||||!.! !!!!!:! ||||||.!!:!!:!!||| !! .!. ! :! rpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLe 232506 : GGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACT : 232562 50 : lValCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeu : 68 !..!|||:!!..!|||!!:! !! !! !.!!|||||||||! !:!!!:!:!!.!.!!! uThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPhe 232563 : CACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTC : 232619 69 : GluValGluAspLeuTyrAsnLysIleLysLeuPheGlyProLeuIlePhePheLeuM : 88 |||! ! !..!||| ! .!.!:!!!:|||! !.!!||||||:!!! ! !||||||| GluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuM 232620 : GAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGA : 232679 89 : etAlaPheAlaLysTyrTyrLeuLeuIleTyrHisGlyAsnAspIleArgGluCysIl : 107 ||!.! !!!.|||! !! !|||:!: ! !.!|||||||||! ! ! |||:! etGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysVa 232680 : TGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGT : 232736 108 : eGluArgIleLysTrpAspTrpLysAsnIleThrTyrHisAspAspLysAsnIleMet : 126 :|||!:!:!:||| !||||||::!|||:!!! ! ! ! !! ! !!::::!!:!:||| lGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMet 232737 : GGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATG : 232793 127 : LeuGluAsnAlaAsnPheGlyArgArgLeuValThrValCysThrPhePheMetTyrS : 146 |||:!!||||||!!..!!|||||| !:!!!.! !:!!..!.!!|||! !|||:!!! LeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisT 232794 : TTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACA : 232853 147 : erGlyPheAlaSerTyrTyrIleIleIleProIleThrIleGlyLysValLysSerGl : 165 !!||| !!!.!||| !! ! |||:!!! ! !:!! !!!:.!!! ! !! ! !! hrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGl 232854 : CCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGG : 232910 166 : uAspGlyAsnLeuThrPheIleProLeuAlaPheProPheSerSerLeuIleValAsp : 184 !:!!! !!:!! !:!!.!. !|||||| !!! ! !!|||! !!!! !:!::!!||| yAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAsp 232911 : GAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGAC : 232967 185 : ThrArgTyrSerProThrAsnGluIleIlePheSerValGlnLeuIleAlaGlyAlaL : 204 ||||||!:!||||||||||||||||||!!:||| !:!!|||! !:!!:!!||| !: ThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheI 232968 : ACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCA : 233027 205 : euMetHisGlyIleThrSerAlaAlaCysGlyLeuGlyAlaMetLeuAlaValHisAl : 223 !!:!!:!!..!:!!||| !!.!||||||||||||||||||:!:||||||:!!||||| leValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAl 233028 : TCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGC : 233084 224 : aCysGlyGlnMetGlnValLeuMetAsnTrpLeuLysHisLeuAsnAspGlyArgSer : 242 ||||||||||:!!.!.|||:!!|||::: ||| ! !!||| |||!.!!:!.!! aCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGly 233085 : GTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGG : 233141 243 : AspMetGlyGluSerValAspAspArgIleAlaCysIleValSerGlnHisValArgI : 262 .!. !! !..! !!.!.!. !:!:!!!.!! !||||||..!!!.|||:!!|||! GlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgT 233142 : CAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTA : 233201 263 : leLeuLysTyrLeuThr : 267 !|||!:!||||||:!! hrLeuArgTyrLeuSer 233202 : CATTAAGGTATTTGTCT : 233218 vulgar: gi|383850508|ref|XP_003700837.1| 11 267 . KQ414889.1 232447 233218 + 460 M 22 66 G 0 3 M 234 702 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232448 233218 460 + . gene_id 11 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232448 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232448 233218 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232448 233218 460 + . alignment_id 11 ; Query gi|383850508|ref|XP_003700837.1| ; Align 232448 12 66 ; Align 232517 34 702 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 437 Query range: 6 -> 297 Target range: 259745 -> 260881 7 : AspSerGluTyrGluArgHisValAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuL : 26 !!:!!!...!:! !!!||| !:!!! !|||:!!|||!::|||||||||!!!|||| GluThrSerPheThrSerHisSerAspTyrSerLeuGlnPheAsnArgTrpPheLeuL 259746 : GAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCCAATTTAATCGATGGTTCCTGA : 259803 27 : ysProIleGlyIleTrp<->ProHisSerAspMetSerArgThrLysLysLeuTyrAs : 44 ||||||||||| !||| ||| |||..!! !!!!||| !:!!|||:!! !.. ysProIleGlyAlaTrpProProSerSerSerThrThrArgLeuGluLysIleIleSe 259804 : AACCGATAGGCGCTTGGCCACCTTCATCCTCCACGACCAGACTCGAGAAGATCATCTC : 259860 45 : pTrpPheThrTyrValValCysTyrGlyLeuIleSerPheLeuPheValProCysSer : 63 ! .!! ! ! !!:!!||||||.!! !||| ! !! !.!.:!!|||||| ! rValIleLeuIlePheIleCysTyrSerThrIleLeuValThrLeuIleProCysVal 259861 : TGTTATCCTGATCTTTATCTGCTACAGTACCATACTGGTCACCCTGATCCCGTGCGTA : 259917 64 : MetTyrValPheLeuGluValGluAspLeuTyrAsnLysIleLysLeuPheGlyProL : 83 :!::!!:!!.!.|||||| !|||..!||||||! |||! |||:!!.!!||||||| LeuHisMetLeuLeuGluLysGluSerLeuTyrMetLysThrLysValLeuGlyProL 259918 : CTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGAAGGTGCTCGGTCCTC : 259977 84 : euIlePhePheLeuMetAlaPheAlaLysTyrTyrLeuLeuIleTyrHisGlyAsnAs : 102 ||! ! !!::!!!:!:!.!! ! !!!.||| !|||:!:! ...|||!..|| euThrHisTrpPheValGlyCysIleAsnTyrThrThrLeuLeuLeuArgGlyArgAs 259978 : TTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTGTTGAGAGGCAGAGA : 260034 103 : pIleArgGluCysIleGluArgIleLysTrpAspTrpLysAsnIleThrTyrHisAsp : 121 ||||! !...|||:!:|||!.!:!::!! ||||||!:!! !|||||| .!. ! pIleLeuSerCysValGluHisValGluAsnAspTrpArgIleIleThrArgGluLys 260035 : CATACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGAATTATAACGAGGGAGAAG : 260091 122 : AspLysAsnIleMetLeuGluAsnAlaAsnPheGlyArgArgLeuValThrValCysT : 141 |||:!!|||:!:||||||..! !!|||!!.||||||||| !:!!!.!.!! !|||. AspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgTyrValAlaAlaSerCysA 260092 : GATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGATACGTCGCTGCCTCTTGCG : 260151 142 : hrPhePheMetTyrSerGlyPheAlaSerTyrTyrIleIleIleProIleThrIleGl : 160 !! !|||:!! ! .!!||| !! !!!!!:!! !:!::!!! !:!:!:!! !! laAlaPheValGlnGlyGlyValLeuCysPheCysLeuValThrValLeuSerThrGl 260152 : CGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGA : 260208 161 : yLysValLysSerGluAspGlyAsnLeuThrPheIleProLeuAlaPheProPheSer : 179 ! !:!!:!! !! !:!!! !!.. !! ! !! !! !||| !!! ! !! ! ! ! uValIleGlnValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaValTyr 260209 : GGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTGCCGTGCGCGGTGTAC : 260265 180 : SerLeuIleValAspThrArgTyrSerProThrAsnGluIleIlePheSerValGlnL : 199 !.! !:!::!!:!!..!!.! !!||||||! !|||||||||:!!.!! !||||||! LysGluLeuIleAsnValAsnAspSerProMetAsnGluIleValLeuValValGlnP 260266 : AAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGATTGTTCTCGTCGTGCAAT : 260325 200 : euIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysGlyLeuGlyAlaMe : 218 !!:!!:!!||| !:!!:!!:!!..!! !||| !!.! !! !.!!|||!.!|||:! heValSerGlyPheIleValAsnSerSerThrValGlyIlePheSerLeuAlaAlaVa 260326 : TCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGT : 260382 219 : tLeuAlaValHisAlaCysGlyGlnMetGlnValLeuMetAsnTrpLeuLysHisLeu : 237 :|||.!!!.!|||||||||||||||:!!.!.|||||||||.!.|||:!!! !.!.!!! lLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMetGluTrpIleThrGluPhe 260383 : TCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAATGGATCACGGAGTTT : 260439 238 : AsnAspGlyArgSerAspMetGlyGluSerValAspAspArgIleAlaCysIleValS : 257 |||! ! !!!!:!!! ! !:!!!.!!.! ! !!:! ! ! :!::!! ValAspGluSerArgAsnArgLysLysLysAlaProPheLysGluIleGlyValIleV 260440 : GTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTCCTTTCAAGGAGATCGGAGTGATTG : 260499 258 : erGlnHisVal{Ar} >>>> Target Intron 1 >>>> {g}IleLeuLysTy : 265 !:!!||| !{ } 260 bp {!}:!:! !!..!: alGluHisHis{Le}+- -+{u}LeuCysSerPh 260500 : TCGAACATCAT{TT}ga.........................tg{A}TTGTGCAGCTT : 260783 266 : rLeuThrHisThrGluArgThrLeuGlnLeuIleSerPheAlaGluPheLeuGlyCys : 284 !:!!:!!!.!! !||| !..!:!!.!.! !|||!!!||| !|||!!.!!! !!||| eIleSerArgIleGluAspValMetAsnArgIleCysPheLeuGluLeuPheArgCys 260784 : CATATCGCGTATCGAGGATGTGATGAACCGGATATGCTTCCTGGAGTTGTTCAGGTGC : 260840 285 : ThrValAspIleCysLeuLeuGlyTyrTyrValIleMet : 297 |||:!!||||||||||||||||||||||||:!!:!!||| ThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeuMet 260841 : ACTCTGGATATATGTCTACTTGGCTACTATATTCTTATG : 260881 vulgar: gi|383850508|ref|XP_003700837.1| 6 297 . KQ414889.1 259745 260881 + 437 M 25 75 G 0 3 M 229 687 S 0 2 5 0 2 I 0 256 3 0 2 S 1 1 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259746 260881 437 + . gene_id 12 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259746 260512 . + . KQ414889.1 exonerate:protein2genome:local exon 259746 260512 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260513 260514 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 260513 260772 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260771 260772 . + . intron_id 0 ; splice_site "TG" KQ414889.1 exonerate:protein2genome:local cds 260773 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260773 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259746 260881 437 + . alignment_id 12 ; Query gi|383850508|ref|XP_003700837.1| ; Align 259746 7 75 ; Align 259824 32 687 ; Align 260774 262 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 423 Query range: 7 -> 296 Target range: 274359 -> 275306 8 : SerGluTyrGluArgHisValAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysP : 27 :!!.!.!:!!!:!!!! ! !:!!! !|||:!:|||! !|||||||||!!!||||||| AlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysP 274360 : GCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGC : 274417 28 : roIleGlyIleTrpPro<->HisSerAspMetSerArgThrLysLysLeuTyrAspTr : 45 |||||||| |||||| !||| !! !!!!:! !:!!::!:!! !... roIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLeuSerHi 274418 : CTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACA : 274474 46 : pPheThrTyrValValCysTyrGlyLeuIleSerPheLeuPheValProCysSerMet : 64 ... :::|||||| !!!!!||| !! ! ! !!:!!||| !!! !.!. sLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIlePhe 274475 : CCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTT : 274531 65 : TyrValPheLeuGluValGluAspLeuTyrAsnLysIleLysLeuPheGlyProLeuI : 84 :!!:!!.!.|||! !! !|||..!|||:!! |||:!:||||||.!!||||||||| HisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuG 274532 : CACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCG : 274591 85 : lePhePheLeuMetAlaPheAlaLysTyrTyrLeuLeuIleTyrHisGlyAsnAspIl : 103 ! !!::!!!!!:!.! !!!.||| ! !|||:!: !.!.!!!!.!!:|| lyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIl 274592 : GTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGAT : 274648 104 : eArgGluCysIleGluArgIleLysTrpAspTrpLysAsnIleThrTyrHisAspAsp : 122 ||||! |||:!:|||!.!!!::!! ||||||!:!! !:!:||| ! !!:||| eArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAsp 274649 : ACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGAT : 274705 123 : LysAsnIleMetLeuGluAsnAlaAsnPheGlyArgArgLeuValThrValCysThrP : 142 :!!.!.:!:||||||:!!||||||!!..!!|||||| !:!!!.!! ! !!|||.!! GlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaA 274706 : CAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGG : 274765 143 : hePheMetTyrSerGlyPheAlaSerTyrTyrIleIleIleProIleThrIleGlyLy : 161 |||||| ! !!!||| !! !!!!|||! !:!:|||! ! !!.!!|||!!: !! laPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGlnTh 274766 : CGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGAC : 274822 162 : sValLysSerGluAspGlyAsnLeuThrPheIleProLeuAlaPheProPheSerSer : 180 |||:!! !! !:!!! !!.! !||| ! ! !||| !!! ! ! !! !!.! rValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLys 274823 : CGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAG : 274879 181 : LeuIleValAspThrArgTyrSerProThrAsnGluIleIlePheSerValGlnLeuI : 200 !||||||! ..! ! ||||||||||||||||||:!!.!!:!! !|||!!!: LysIleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnPheV 274880 : AAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCG : 274939 201 : leAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysGlyLeuGlyAlaMetLe : 219 !::!!||| !:!!:!!:!!..!! !.!! !!.!|||! !.!!|||!.!|||:!!!! alSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPh 274940 : TGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTT : 274996 220 : uAlaValHisAlaCysGlyGlnMetGlnValLeuMetAsnTrpLeuLysHisLeuAsn : 238 !|||!.!||||||! !||||||:!!...|||||||||! |||:!!! .!.!!! eAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheVal 274997 : CGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTG : 275053 239 : AspGlyArgSerAspMetGlyGluSerVal<->AspAspArgIleAlaCysIleValS : 257 :!! ! !!!!|||......::::::||| ..!..!|||!.! :!!|||. AsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValValValG 275054 : AATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCG : 275113 258 : erGlnHisValArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}Ty : 265 .!!!.|||:!!|||:!!|||{!.} 74 bp {.}!: luHisHisLeuArgValLeu{Se}++ ++{r}Ph 275114 : AACATCATCTGAGGGTACTC{AG}gt.........................ag{T}TT : 275211 266 : rLeuThrHisThrGluArgThrLeuGlnLeuIleSerPheAlaGluPheLeuGlyCys : 284 !:!!.!!!.!! !||| !..!:!!.!.! !|||!!!||| !|||!!.!!! !||| eIleAlaArgIleGluAspValMetAsnArgIleCysPheMetGluLeuPheLysCys 275212 : CATAGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAATTGTTCAAGTGT : 275268 285 : ThrValAspIleCysLeuLeuGlyTyrTyrValIle : 296 |||:!!|||!!:|||:!!||||||||||||:!!:!! ThrLeuAspMetCysMetLeuGlyTyrTyrIleLeu 275269 : ACTCTGGATATGTGCATGCTTGGCTATTACATTCTC : 275306 vulgar: gi|383850508|ref|XP_003700837.1| 7 296 . KQ414889.1 274359 275306 + 423 M 25 75 G 0 3 M 216 648 G 0 3 M 15 45 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274360 275306 423 + . gene_id 13 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274360 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274360 275135 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274360 275306 423 + . alignment_id 13 ; Query gi|383850508|ref|XP_003700837.1| ; Align 274360 8 75 ; Align 274438 33 648 ; Align 275089 249 45 ; Align 275211 265 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 364 Query range: 0 -> 264 Target range: 303151 -> 304869 1 : MetGlnLysSerGlyLysAspSerGluTyrGluArgHisValAsnLeuSerIleGlnT : 20 !!:.!.::!!.! !::!:!!! !.!.|||:!!!:! !!:!! !! ! !! !:!! IleAspArgLysProArgAsnLeuAsnTyrLysLysAspIleValTyrValThrLysH 303152 : ATCGATCGGAAACCGCGGAATTTGAATTACAAGAAAGATATCGTTTACGTTACAAAGC : 303209 21 : rpAsnArgTrpLeuLeuLysProIleGlyIleTrpProHisSerAspMetSerArgTh : 39 !:!!:!|||:!!|||||| !!:!!|||||||||||| :!!! :!!..!..!|| isSerLysTrpIleLeuLysSerLeuGlyIleTrpPro---AlaValLeuAspGluTh 303210 : ACAGCAAATGGATCCTGAAGTCCCTTGGTATTTGGCCA---GCCGTGTTGGACGAAAC : 303263 40 : rLysLysLeuTyrAspTrpPheThrTyrValValCysTyrGlyLeuIleSerPheLeu : 58 | ! !!!! .!!||| !! !:!! !! !! !:!!:!!! !||| ! rAlaGlyPheLeuProLysIleThrIleGlyLeuSerAsnLeuValLeuLeuPheThr 303264 : CGCAGGATTCCTACCAAAAATCACCATTGGACTCAGTAATTTGGTTCTATTATTCACC : 303320 59 : PheValProCysSerMetTyrValPheLeuGluValGluAspLeuTyrAsnLysIleL : 78 ! :!!||||||! !:!::!!:!!.!.!!!||| !:!!||| ! ! !:!:!:| ValIleProCysIleLeuHisIleIlePheGluGlnLysAspThrIleIleArgLeuL 303321 : GTGATACCGTGTATTCTACACATAATATTCGAACAAAAGGATACGATAATAAGATTGA : 303380 79 : ysLeuPheGlyProLeuIlePhePheLeuMetAlaPheAlaLysTyrTyrLeuLeuIl : 97 |||||||||||! !|||! !|||! !|||!!::!!!!. !||||||!:: !||| ysLeuPheGlyLeuLeuSerPheCysLeuIleSerLeuMetLysTyrTrpAlaLeuAl 303381 : AACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTTGATGAAGTATTGGGCCCTCGC : 303437 98 : eTyrHisGlyAsnAspIleArgGluCysIleGluArgIleLysTrpAspTrpLysAsn : 116 ! !.. ! |||!:!||||||||||||..!:!::!! ! |||||||||.!. aThrArgLysProArgIleLysGluCysIleGluGluValGlnSerAspTrpLysGlu 303438 : CACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAGGTGCAAAGTGATTGGAAAGAG : 303494 117 : >>>> Target Intron 1 >>>> IleThrTyrHisAspAspLysAsnIleMe : 126 938 bp :!: !! !! ! |||:::.!.!!:|| ++ ++ValGluSerLeuArgAspArgGluMetMe 303495 : gt.........................agGTGGAATCTCTCAGAGATCGTGAAATGAT : 304462 127 : tLeuGluAsnAlaAsnPheGlyArgArgLeuValThrValCysThrPhePheMetTyr : 145 ||||:!! !!!.!.!..!.||||||!.!|||..!! !:!!|||.!!.!.||||||||| tLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyr 304463 : GCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTAT : 304519 146 : SerGlyPheAlaSerTyrTyrIleIleIleProIleThrIleGlyLysValLysSerG : 165 !!!||| !.!!! !|||:!!! :!!!!:! !.!!.!!! !|||! ! ! !..!| ThrGlyGlyThrIleTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspG 304520 : ACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATG : 304579 166 : luAspGlyAsnLeuThrPheIleProLeuAlaPheProPheSerSerLeuIleValAs : 184 || !|||! !|||.!!! !||||||!.!!:!||| !! !||| !:!! !!|| lu---TyrAsnArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAs 304580 : AG---TATAATCGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGA : 304633 185 : pThrArgTyrSerProThrAsnGluIleIlePheSerValGlnLeuIleAlaGlyAla : 203 |..!!:! ||||||! ! !!|||:!::!!!:!! !|||!!.! !!!:..!||| ! pValGlnThrSerProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyr 304634 : CGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATAC : 304690 204 : LeuMetHisGlyIleThrSerAlaAlaCysGlyLeuGlyAlaMetLeuAlaValHisA : 223 :!!!!::!!..!||||||:!!!.!||||||||||||!.!|||:!:!!!|||..!|||| ValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisA 304691 : GTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACG : 304750 224 : laCysGlyGlnMetGlnValLeuMetAsnTrpLeuLysHisLeuAsnAspGlyArgSe : 242 |||||||||||!!:.!.:!!:!!|||::! ! ||| !!||| !:!!.!!!:!.. laCysGlyGlnIleAspIleValMetSerArgLeuGlyAspLeuValAsnSerLysGl 304751 : CTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGA : 304807 243 : rAspMetGlyGluSerValAspAspArgIleAlaCysIleValSerGlnHisValArg : 261 ! ..!.....!:!!||| ! |||:!! ! ||||||..!!!.|||:!!||| u------SerSerAspLeuAspLysArgLeuIleGluIleValGluHisHisLeuArg 304808 : A------TCATCTGATTTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGA : 304858 262 : IleLeuLys : 264 ||||||!:! IleLeuArg 304859 : ATTTTAAGG : 304869 vulgar: gi|383850508|ref|XP_003700837.1| 0 264 . KQ414889.1 303151 304869 + 364 M 32 96 G 1 0 M 83 249 5 0 2 I 0 934 3 0 2 M 49 147 G 1 0 M 76 228 G 2 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303152 304869 364 + . gene_id 14 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303152 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303152 303496 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304869 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304869 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 303152 304869 364 + . alignment_id 14 ; Query gi|383850508|ref|XP_003700837.1| ; Align 303152 1 96 ; Align 303248 34 249 ; Align 304435 117 147 ; Align 304582 167 228 ; Align 304810 245 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 363 Query range: 5 -> 264 Target range: 289705 -> 290482 6 : LysAspSerGluTyrGluArgHisValAsnLeuSerIleGlnTrpAsnArgTrpLeuL : 25 ..!:!!..!...||||||! ! !!:!!..!! !!!!.!!:!!! !!.!|||:!!| SerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleL 289706 : TCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCT : 289763 26 : euLysProIleGlyIleTrpPro<-><->HisSerAspMetSerArgThrLysLysLe : 42 ||||||||||||||!!:!::||| !||| ! !|||||| !:!!::! euLysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgTh 289764 : TGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAAC : 289820 43 : uTyrAspTrpPheThrTyrValValCysTyrGlyLeuIleSerPheLeuPheValPro : 61 ! ... !!!. ! !:!!||||||! !..!:!!:!!..!|||:!!.!.|||||| rAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValPro 289821 : GGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCG : 289877 62 : CysSerMetTyrValPheLeuGluValGluAspLeuTyrAsnLysIleLysLeuPheG : 81 ! !||| :!!|||.!.!!!...! !.!.|||:!! !!!.. :!!||| !.!!| PheSerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuG 289878 : TTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCG : 289937 82 : lyProLeuIlePhePheLeuMetAlaPheAlaLysTyrTyrLeuLeuIleTyrHisGl : 100 ||||||||! |||! !|||! .!!||| !||||||! !! !!!!! ! ! || lyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGl 289938 : GACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGG : 289994 101 : yAsnAspIleArgGluCysIleGluArgIleLysTrpAspTrpLysAsnIleThrTyr : 119 |:::! ||| !!...|||:!::!!!.!|||:!! ! |||||||||! :!: ! !! ySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAsp 289995 : TTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGAC : 290051 120 : HisAspAspLysAsnIleMetLeuGluAsnAlaAsnPheGlyArgArgLeuValThrV : 139 .!.||| !!::: !|||||||||..! !!!.!!...!..!!|||!.!|||:!!! !: GluAspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysL 290052 : GAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAAC : 290111 140 : alCysThrPhePheMetTyrSerGlyPheAlaSerTyrTyrIleIleIleProIleTh : 158 !!|||.!!.!!|||:!!|||! !||| ! !|||||| !!! !:!!||||||:!: euCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPh 290112 : TGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTT : 290168 159 : rIleGlyLysValLysSerGluAspGlyAsnLeuThrPheIleProLeuAlaPhePro : 177 ! ..! !||||||! !:!!||||||:!!|||.!!! !||||||.!!!:!||| e------SerLysLysSerValAsnGlyAsnValThrIleArgProLeuThrTyrPro 290169 : C------TCGAAGAAGAGCGTGAACGGTAACGTGACTATCAGACCTCTAACTTATCCC : 290219 178 : PheSerSerLeuIleValAspThrArgTyrSerProThrAsnGluIleIlePheSerV : 197 !! !..! !.!! !!|||..!!:! ! ||||||.!! !!||||||:!!|||!!!: GlyTyrGluGluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysM 290220 : GGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTA : 290279 198 : alGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysGlyLeuGl : 216 !!!!.! !:!! !! ! !:!!! ! ..!||||||! !||||||! !.!!||| etHisCysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuTh 290280 : TGCACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGAC : 290336 217 : yAlaMetLeuAlaValHisAlaCysGlyGlnMetGlnValLeuMetAsnTrpLeuLys : 235 !.!!!!:!!!|||..!|||.!!|||||||||!!::!!:!!! !! !!.. !!|||:!! rThrIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGlu 290337 : GACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAG : 290393 236 : HisLeuAsnAspGlyArgSerAspMetGlyGluSerValAspAspArgIleAlaCysI : 255 !!|||!.. ! !! !!! ! :!!! !:!!.!!|||..!||||||:!:||| !: AspLeuThrLysArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValV 290394 : GATCTGACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTG : 290453 256 : leValSerGlnHisValArgIleLeuLys : 264 !!|||||| ||||||..!||||||||| alValSerGlyHisValGluIleLeuLys 290454 : TTGTGAGCGGTCACGTGGAGATCTTGAAG : 290482 vulgar: gi|383850508|ref|XP_003700837.1| 5 264 . KQ414889.1 289705 290482 + 363 M 27 81 G 0 6 M 126 378 G 2 0 M 104 312 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289706 290482 363 + . gene_id 15 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289706 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289706 290482 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289706 290482 363 + . alignment_id 15 ; Query gi|383850508|ref|XP_003700837.1| ; Align 289706 6 81 ; Align 289793 33 378 ; Align 290171 161 312 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 301 Query range: 14 -> 264 Target range: 236849 -> 237599 15 : AsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProIleGlyIleTrpProHisS : 34 :!!! !|||:!!||||||||||||||| !:!!||| !||||||! !||||||!!.! AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnP 236850 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGT : 236907 35 : erAspMetSerArgThrLysLysLeuTyrAspTrpPheThrTyrValValCysTyrGl : 53 !... |||!.! !:!!!:! ! !..! ! .!. ! !!|||:!!|||||| heSer---SerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrTh 236908 : TCTCG---TCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACAC : 236961 54 : yLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeuGluValGluAsp : 72 ! !||| !|||! !.!.:!!|||||||||:!!:!!:!!.!.|||||| !! ! ! rAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThr 236962 : CGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACT : 237018 73 : LeuTyrAsnLysIleLysLeuPheGlyProLeuIlePhePheLeuMetAlaPheAlaL : 92 !!!|||!..|||:!:|||:!!.!!||| !!|||! ! !!:::!!.!...!.!! !! PheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleS 237019 : TTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCA : 237078 93 : ysTyrTyrLeuLeuIleTyrHisGlyAsnAspIleArgGluCysIleGluArgIleLy : 111 ..||| !:!!|||:!: !.. !!!!. !||||||.!.! !.!!.!.!.!!!::! erTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGl 237079 : GTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGA : 237135 112 : sTrpAspTrpLysAsnIleThrTyrHisAspAspLysAsnIleMetLeuGluAsnAla : 130 ! ||||||!:!!..! ||| ::: |||...:::||||||:!! !!||| uThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAla 237136 : GACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCG : 237192 131 : AsnPheGlyArgArgLeuValThrValCysThrPhePheMetTyrSerGlyPheAlaS : 150 !!.|||.!!||| ! !!.!! ! !||||||.!!|||!!::!!.!!|||.!. !. LysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuG 237193 : AAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTG : 237252 151 : erTyrTyrIleIleIleProIleThrIleGlyLysValLysSerGluAspGlyAsnLe : 169 !!|||! !:!!!!:! ! !! !|||! ! ||| ! !! !:!! !!.! lyTyrCysValMetThrAlaSerThrThrMetValValValValGlyAsnLysThrTh 237253 : GATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTAC : 237309 170 : uThrPheIleProLeuAlaPheProPheSerSerLeuIleValAspThrArgTyrSer : 188 !! !!!. ! !||| !!!!.|||.!.! !!.! !:!!:!! ..! ! !:! rIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsn 237310 : GATCTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAAT : 237366 189 : ProThrAsnGluIleIlePheSerValGlnLeuIleAlaGlyAlaLeuMetHisGlyI : 208 !!! !|||!!:|||:!! !!! ! !|||!!!:!!:!!||| !:!! !:!!..!! ThrMetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnS 237367 : ACTATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACA : 237426 209 : leThrSerAlaAlaCysGlyLeuGlyAlaMetLeuAlaValHisAlaCysGlyGlnMe : 227 !.!!! !::!!.! .!!||| !::! |||.!! !||||||! !||||||:! erAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLe 237427 : GTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTT : 237483 228 : tGlnValLeuMetAsnTrpLeuLys<->HisLeuAsnAspGlyArgSerAspMetGly : 245 !...|||:!!||| ! !:!!:!! !:!!!:!!!:!.!||| !! ! ! uSerValValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLys 237484 : GAGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAG : 237540 246 : GluSerValAspAspArgIleAlaCysIleValSerGlnHisValArgIleLeuLys : 264 !!:..! ! !|||..!||| !! ||||||..!:!!|||:!!|||:!:|||||| AspAspHisPheAspGluIleProThrIleValGluGluHisLeuArgValLeuLys 237541 : GACGATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAG : 237599 vulgar: gi|383850508|ref|XP_003700837.1| 14 264 . KQ414889.1 236849 237599 + 301 M 21 63 G 1 0 M 199 597 G 0 3 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236850 237599 301 + . gene_id 16 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236850 237599 . + . KQ414889.1 exonerate:protein2genome:local exon 236850 237599 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 236850 237599 301 + . alignment_id 16 ; Query gi|383850508|ref|XP_003700837.1| ; Align 236850 15 63 ; Align 236913 37 597 ; Align 237513 236 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 281 Query range: 295 -> 387 Target range: 224317 -> 224658 296 : IleMetGluSerLysSerAsnAspIleThrAsnThrValThrTyrAlaIleLeuLeuT : 315 .!!...||| ...|||::: !!:!!|||!:!.!!||||||||| !|||||||||! PheGlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuM 224318 : TTTCaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCA : 224375 316 : hrSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl : 334 !|||||||||||||||||||||||||||||||||||||||||||||||||||||||| etSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl 224376 : TGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAca : 224432 335 : nCysLys{L} >>>> Target Intron 1 >>>> {ys}IleGlyGluMetThr : 342 | |||{|} 65 bp {||}||||||::!:!!:!! nValLys{L}-+ +-{ys}IleGlyGlnValSer 224433 : ggtgaaa{a}at.........................aa{aa}attggacaAGTGTCG : 224521 343 : TyrMetThrGluTrpTyrArgLeuProGlyAsnLysLysLeuTyrCysIleMetIleI : 362 ||||||! !!!:|||||||||||| !!|||||||||||||||! !||||||:!!|||| TyrMetIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleI 224522 : TACATGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAA : 224581 363 : leAlaMetSerAsnSerSerMetLysLeuThrAlaGlySerMetValGluLeuSerIl : 381 ||||||||||||||||||||!!:|||||||||||||||!:!||||||||||||!!!:! leAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLe 224582 : TCGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCT : 224638 382 : eGluThrPheThrAsnVal : 387 ! |||||| !:!!||| uThrThrPheGlyAspVal 224639 : AACCACTTTCGGTGACGTA : 224658 vulgar: gi|383850508|ref|XP_003700837.1| 295 387 . KQ414889.1 224317 224658 + 281 M 41 123 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224318 224658 281 + . gene_id 17 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224318 224441 . + . KQ414889.1 exonerate:protein2genome:local exon 224318 224441 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224442 224443 . + . intron_id 1 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local intron 224442 224506 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224505 224506 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 224507 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224507 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224318 224658 281 + . alignment_id 17 ; Query gi|383850508|ref|XP_003700837.1| ; Align 224318 296 123 ; Align 224509 338 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 256 Query range: 5 -> 229 Target range: 194141 -> 194807 6 : LysAspSerGluTyrGluArgHisValAsnLeuSerIleGlnTrpAsnArgTrpLeuL : 25 ::::!! !.!.|||:!! ! !!..!.!.! !:!!:!!!:! !:! !|||| ArgAsnValAsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuL 194142 : CGCAACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTC : 194199 26 : euLysProIleGlyIleTrpProHisSerAspMetSerArgThrLysLysLeuTyrAs : 44 ||! !||||||||||||||||||.....!||| !||| !!:! ! ! euThrProIleGlyIleTrpProArgGluAspSerLeuArgAspArgValArgLeuPh 194200 : TAACACCGATCGGTATCTGGCCAAGGGAGGATTCTCTTCGCGACAGAGTCCGACTGTT : 194256 45 : pTrpPheThrTyrValValCysTyrGlyLeuIleSerPheLeuPheValProCysSer : 63 ! ||| !|||||| !:!!.!|||!!:!!!||||||.!.|||||| ! ! eAlaGlnThrGlyValVal---PheAlaLeuMetCysPheLeuLeuValProHisVal 194257 : CGCTCAAACTGGCGTGGTC---TTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTG : 194310 64 : MetTyrValPheLeuGluValGluAspLeuTyrAsnLysIleLysLeuPheGlyProL : 83 !!:|||..!!:!!!!!!: !||||||||| !.. ! !!:|||:!!.!!!.! !!! IleTyrThrTyrPheAspCysGluAspLeuThrArgTyrMetLysValIleAlaAlaG 194311 : ATCTACACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGC : 194370 84 : euIlePhePheLeuMetAlaPheAlaLysTyrTyrLeuLeuIleTyrHisGlyAsnAs : 102 !:!:||| !|||:!!|||.!! !|||!:!!:: !:!!||| :!! !!!!.!! lnValPheSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnArgLysGl 194371 : AAGTGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGA : 194427 103 : pIleArgGluCysIleGluArgIleLysTrpAspTrpLysAsnIleThrTyrHisAsp : 121 :|||||| |||:!: !..!!!::!! !.!.!::!:!:!!:!: !! !.!.!!: uIleArgPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCysGluGlu 194428 : GATCAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAG : 194484 122 : AspLysAsnIleMetLeuGluAsnAlaAsnPheGlyArgArgLeuValThrValCysT : 141 |||::!.!.:!:||| !.!. !|||!!..!!|||||| !!!!..!|||:!!! ! AspArgGlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrL 194485 : GATCGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACT : 194544 142 : hrPhePheMetTyrSerGlyPheAlaSerTyrTyrIleIleIleProIleThrIleGl : 160 ! .!! |||.!!||| ! ! !!|||:!!||||||:!!|||:!:! ! ! euGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGl 194545 : TGGGACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGA : 194601 161 : yLysValLysSerGluAspGlyAsnLeuThrPheIleProLeuAlaPheProPheSer : 179 !!:!:!! !.!|||||| ||| !||| ||||||||| !!!:! ! !!:! uArgIleValLysGluAsp---AsnSerThrGlnIleProLeuProTyrLeuSerAsn 194602 : GAGGATTGTCAAGGAGGAT---AACAGTACTCAGATACCTCTGCCATATTTGAGCAAC : 194655 180 : SerLeuIleValAspThrArgTyrSerProThrAsnGluIleIlePheSerValGlnL : 199 ! !:!!.!! !!! ! !..! !!||||||! ! !!||||||! !||| ! !|||: TyrValPhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerGlnI 194656 : TATGTTTTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGA : 194715 200 : euIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysGlyLeuGlyAlaMe : 218 !!:!: !.!!::!:!!!!: ..!! !.!!!!!.! !! !.!!|||! !|||! leLeuIleSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAlaTh 194716 : TACTGATTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTAC : 194772 219 : tLeuAlaValHisAlaCysGlyGlnMetGlnVal : 229 :!! !:!!|||..!|||||| !.!.:!!||| rIleIleMetHisCysCysGlyLeuPheGluVal 194773 : TATTATTATGCATTGCTGTGGCTTGTTCGAAGTG : 194807 vulgar: gi|383850508|ref|XP_003700837.1| 5 229 . KQ414889.1 194141 194807 + 256 M 45 135 G 1 0 M 115 345 G 1 0 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194142 194807 256 + . gene_id 18 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194142 194807 . + . KQ414889.1 exonerate:protein2genome:local exon 194142 194807 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 194142 194807 256 + . alignment_id 18 ; Query gi|383850508|ref|XP_003700837.1| ; Align 194142 6 135 ; Align 194277 52 345 ; Align 194622 168 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 254 Query range: 171 -> 268 Target range: 202682 -> 202972 172 : IleProLeuAlaPheProPheSerSerLeuIleValAspThrArgTyrSerProThrA : 191 :!! !:!!.!!||| !!||||||.!!!!!|||:!!|||..!||||||||||||..!| LeuSerValThrPheSerPheSerGlyPheIleIleAspValArgTyrSerProValA 202683 : CTTAGTGTGACGTTCTCCTTCTCAGGATTTATCATTGATGTTAGATACAGTCCTGTGA : 202740 192 : snGluIleIlePheSerValGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSe : 210 ||||||||.!!||||||:!!!:!:!!:!!|||! ! !|||!!:||||||:!!||| snGluIlePhePheSerIleArgIleValAlaValIleLeuIleHisGlyValThrVa 202741 : ACGAGATCTTCTTCTCGATTCGAATCGTAGCTGTCATCCTAATTCACGGTGTCACTGT : 202797 211 : rAlaAlaCysGlyLeuGlyAlaMetLeuAlaValHisAlaCysGlyGlnMetGlnVal : 229 !!.!|||||| !!||| !|||:!!!!!|||||||||! !||||||||||||.!.||| lGlyAlaCysCysLeuThrAlaLeuPheAlaValHisAspCysGlyGlnMetAspVal 202798 : AGGAGCTTGTTGCTTGACAGCGTTGTTTGCGGTTCACGATTGCGGCCAGATGGACGTT : 202854 230 : LeuMetAsnTrpLeuLysHisLeuAsnAspGlyArgSerAspMetGly--GluSerVa : 248 |||||| !||||||:!!||||||! ||||||||||||||||||.!!## !:!|| LeuMetAlaTrpLeuGluHisLeuMetAspGlyArgSerAspMetSer##---AsnVa 202855 : TTGATGGCCTGGCTGGAACATTTGATGGATGGTCGTTCGGATATGAGTAA---AATGT : 202910 249 : lAspAspArgIleAlaCysIleValSerGlnHisValArgIleLeuLysTyrLeuThr : 267 |:!!! !|||!!:!.! !|||||||||||||||:!!||||||||||||! !:!! ! lAsnGlyArgMetValThrIleValSerGlnHisIleArgIleLeuLysCysValGlu 202911 : GAATGGCAGAATGGTGACCATCGTGAGCCAACACATACGGATACTGAAATGTGTGGAA : 202967 268 : His : 268 ||| His 202968 : CAT : 202972 vulgar: gi|383850508|ref|XP_003700837.1| 171 268 . KQ414889.1 202682 202972 + 254 M 74 222 F 0 2 G 1 0 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202683 202972 254 + . gene_id 19 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202683 202972 . + . KQ414889.1 exonerate:protein2genome:local exon 202683 202972 . + . insertions 0 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local similarity 202683 202972 254 + . alignment_id 19 ; Query gi|383850508|ref|XP_003700837.1| ; Align 202683 172 222 ; Align 202907 247 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 243 Query range: 297 -> 402 Target range: 272836 -> 273302 298 : GluSerLysSerAsnAspIleThrAsnThrValThrTyrAlaIleLeuLeuThrSerL : 317 |||!!!! ..!:!!|||.!! !!:! !..!|||||| !!!::!!|||! !|||: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 318 : euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln >>> : 335 !:|||||||||||||||||| |||||||||||||||:!!:!!.!!|||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 336 : > Target Intron 1 >>>> CysLysLysIleGlyGluMetThrTyrMetThrG : 346 70 bp ||||||||||||||||||:!:..!|||||||||. ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 347 : luTrpTyrArgLeuProGlyAsnLysLysLeuTyrCysIleMetIleIleAlaMetSe : 365 !.|||||| !|||||||||!!. ! ! ||| !! |||:!!||||||:!!! !! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 366 : rAsnSerSerMetLysLeuThrAlaGlySerMetValGluLeuSerIleGluThrPhe : 384 !!:! ! !!!:|||:!!|||||||||!!!!!:||| :!!|||:!: ! |||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 385 : ThrAsn >>>> Target Intron 2 >>>> ValValLysThrAlaPheAlaPh : 394 !:!! 81 bp |||:!!|||!:!|||||||||!: GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 395 : eLeuAsnValLeuArgThrMetThr : 402 !||||||:!!|||||| !! !||| rLeuAsnMetLeuArgGlnThrThr 273277 : CTTAAATATGCTACGACAAACGACA : 273302 vulgar: gi|383850508|ref|XP_003700837.1| 297 402 . KQ414889.1 272836 273302 + 243 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273302 243 + . gene_id 20 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273302 243 + . alignment_id 20 ; Query gi|383850508|ref|XP_003700837.1| ; Align 272837 298 111 ; Align 273018 335 156 ; Align 273255 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 243 Query range: 6 -> 194 Target range: 294660 -> 295227 7 : AspSerGluTyrGluArgHisValAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuL : 26 |||..! !!..!!.! !!||| !|||:!!:!!!:: !||| !!||||||| AspAspThrAsnArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuL 294661 : GACGATACTAACAGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGA : 294718 27 : ysProIleGlyIleTrpPro<-><->HisSerAspMetSerArgThrLysLysLeuTy : 43 |||||||||||:!!|||||| :!!||| !!! |||!:! !!!.|||:!! ysProIleGlyLeuTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLe 294719 : AACCGATCGGTCTTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCT : 294775 44 : rAspTrpPheThrTyrValValCysTyrGlyLeuIleSerPheLeuPheValProCys : 62 !... .!! ! !!.! !||| ! !:!! !|||:!!!!.||||||||| uSerIleIleLeuIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCys 294776 : TTCGATAATTCTGATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGC : 294832 63 : SerMetTyrValPheLeuGluValGluAspLeuTyrAsnLysIleLysLeuPheGlyP : 82 .!! !:! ! ! !!!.!.|||::::::::: |||!!:||||||.!.|||| GlyTyrPheCysValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyP 294833 : GGATACTTCTGTGTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTC : 294892 83 : roLeuIlePhePheLeuMetAlaPheAlaLysTyrTyrLeuLeuIleTyrHisGlyAs : 101 ||:!!:!!!:!! !:!!:!::!!.!. !!:!||| !! !|||:!!! ! ! roValLeuTyrSerMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrPr 294893 : CGGTACTATACTCTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCC : 294949 102 : nAspIleArgGluCysIleGluArgIleLysTrpAspTrpLysAsnIleThrTyrHis : 120 !! .!!!:!.!.||||||||| !|||:!! ||||||||| ||| ! !!! oAlaPheLysHisCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnPro 294950 : CGCGTTCAAGCATTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCG : 295006 121 : AspAspLysAsnIleMetLeuGluAsnAlaAsnPheGlyArgArgLeuValThrValC : 140 !!: !!::! ||||||:!!:!!||||||! !! !!:!|||:!!..!..!!.!! GluHisArgAlaIleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaP 295007 : GAACACCGAGCGATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTT : 295066 141 : ysThrPhePheMetTyrSerGlyPheAlaSerTyrTyrIleIleIleProIleThrIl : 159 !|||.!!.!.!!:||||||..! !.!||||||:!! !|||:::|||... heThrIleIleIleTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSe 295067 : TTACTATTATAATCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttc : 295123 160 : eGlyLysValLysSerGluAspGlyAsnLeuThrPheIleProLeuAlaPheProPhe : 178 ... :!!:!!!:!:!! ! ..!||| |||.!! ! !!||| !!.!!||| ! rAsnAlaLeuGluAsnLysLysAsnAsn---ThrIleArgAlaLeuProIleProGly 295124 : aaacgctTTGGAGAACAAGAAGAATAAT---ACGATTCGTGCGTTACCAATTCCTGGC : 295177 179 : SerSerLeuIleValAspThrArgTyrSerProThrAsnGluIleIle : 194 ! !..!|||.!!||||||.!! !! !||||||||| !!||||||||| TyrGluLeuPheValAspAlaTyrSerSerProThrTyrGluIleIle 295178 : TACGAGTTATTCGTAGACGCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: gi|383850508|ref|XP_003700837.1| 6 194 . KQ414889.1 294660 295227 + 243 M 26 78 G 0 6 M 136 408 G 1 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294661 295227 243 + . gene_id 21 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294661 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294661 295227 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294661 295227 243 + . alignment_id 21 ; Query gi|383850508|ref|XP_003700837.1| ; Align 294661 7 78 ; Align 294745 33 408 ; Align 295153 170 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 222 Query range: 297 -> 402 Target range: 301686 -> 302163 298 : GluSerLysSerAsnAspIleThrAsnThrValThrTyrAlaIleLeuLeuThrSerL : 317 |||!!!:!!!:!!:!|||! ! ! !! !:!!|||!:! !! !||||||||||||! GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerP 301687 : GAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGT : 301744 318 : euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln >>> : 335 !!||||||||||||||||||||||||||||||||||||:!!:!!:!!|||||| heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301745 : TCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt... : 301800 336 : > Target Intron 1 >>>> CysLysLysIleGlyGluMetThrTyrMetThrG : 346 80 bp |||!..:!!||||||..! :!!||| !! !! ++CysSerGlnIleGlySerAlaSerTyrGluIleA 301801 : ......................agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCG : 301911 347 : luTrpTyrArgLeuProGlyAsnLysLysLeuTyrCysIleMetIleIleAlaMetSe : 365 !:||||||!.!||||||!.!!!.!:! !! ! !! !|||:!::!!! !!.!!!:|| spTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSe 301912 : ATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATC : 301968 366 : rAsnSerSerMetLysLeuThrAlaGlySerMetValGluLeuSerIleGluThrPhe : 384 |.!.! ! !! !|||||||||||||||!.!!!::!!!!:||||||:!:.!.|||||| rGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPhe 301969 : GCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTC : 302025 385 : ThrAsn >>>> Target Intron 2 >>>> ValValLysThrAlaPheAlaPh : 394 !:!::! 82 bp ||||||||||||:!! ! !.!!: SerSer++ ++ValValLysThrSerValValTy 302026 : AGCTCTgt.........................agGTGGTGAAAACATCGGTGGTGTA : 302137 395 : eLeuAsnValLeuArgThrMetThr : 402 !||||||:!!|||||||||:!:||| rLeuAsnLeuLeuArgThrValThr 302138 : CTTGAATTTACTGCGAACAGTTACA : 302163 vulgar: gi|383850508|ref|XP_003700837.1| 297 402 . KQ414889.1 301686 302163 + 222 M 37 111 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301687 302163 222 + . gene_id 22 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302163 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302163 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301687 302163 222 + . alignment_id 22 ; Query gi|383850508|ref|XP_003700837.1| ; Align 301687 298 111 ; Align 301878 335 156 ; Align 302116 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 206 Query range: 289 -> 398 Target range: 305076 -> 305816 290 : LeuLeuGlyTyrTyrValIleMetGluSerLysSerAsnAspIleThrAsnThrValT : 309 !!!||| |||::: ..!!!:!!!:!!|||!:!:!!! !..!!:! !..!| PheLeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrT 305077 : TTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAA : 305134 310 : hrTyrAlaIleLeuLeuThrSerLeuThrPheAsnIlePheIlePheCysTyrIleGl : 328 |||||.!!:!:||||||! !|||:!!||||||||||||||||||!!.||||||||||| hrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGl 305135 : CATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGG : 305191 329 : yGluLeuValAlaGluGln >>>> Target Intron 1 >>>> CysLysLysI : 338 ||||:!!:!! !|||:!! 413 bp !!!..!..: yGluIleLeuMetGluLys++ ++SerSerSerV 305192 : TGAGATTCTTATGGAAAAGgt.........................agAGCAGTAGCG : 305634 339 : leGlyGluMetThrTyrMetThrGluTrpTyrArgLeuProGlyAsnLysLysLeuTy : 357 !!||| ! !!:!|||! !...||||||!.!|||||| !!!.! !! !! ! alGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGl 305635 : TTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGG : 305691 358 : rCysIleMetIleIleAlaMetSerAsnSerSerMetLysLeuThrAlaGlySerMet : 376 ! !|||:!:|||||||||||||||!:!!:! !! |||:!!!:!||||||!.!:!: yLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysVal 305692 : TCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTA : 305748 377 : ValGluLeuSerIleGluThrPheThrAsnValValLysThrAlaPheAlaPheLeuA : 396 |||!!:||||||:!!...|||||| !|||||| ! ! ! :::::: :::: ValAspLeuSerLeuSerThrPheGlyAsnValSerTyrTyrGlnTyrSerAsnIleS 305749 : GTTGATTTATCTTTATCCACATTTGGAAACGTGAGTTACTATcaatattccaatattt : 305808 397 : snValLeu : 398 :::::::: erIleVal 305809 : caattgtt : 305816 vulgar: gi|383850508|ref|XP_003700837.1| 289 398 . KQ414889.1 305076 305816 + 206 M 45 135 5 0 2 I 0 409 3 0 2 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305077 305816 206 + . gene_id 23 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305077 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305077 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305816 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305816 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305077 305816 206 + . alignment_id 23 ; Query gi|383850508|ref|XP_003700837.1| ; Align 305077 290 135 ; Align 305625 335 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 203 Query range: 15 -> 122 Target range: 200538 -> 200866 16 : LeuSerIleGlnTrpAsnArgTrpLeuLeuLysProIleGlyIleTrp----ProHis : 33 :!!!!!||||||||||||||||||:!!|||||| !!!!:!.!:!:|||#### !!:!! ValCysIleGlnTrpAsnArgTrpIleLeuLysSerMetAlaLeuTrp####ThrAsn 200539 : GTTTGCATACAGTGGAATCGTTGGATCTTGAAATCAATGGCTTTGTGGTTTGACAAAT : 200594 34 : SerAspMetSerArgThrLysLysLeuTyrAspTrpPheThrTyrValValCysTyrG : 53 !! .!. !|||:!!!:!!!. !||| ! !!.!.! ! !!.!||||||!! | ProThrPheHisArgSerArgAsnAsnTyrThrArgLeuIleSerAlaValCys***G 200595 : CCAACATTTCACCGGTCGAGAAATAACTACACTCGGCTAATCAGTGCCGTTTGTTAAG : 200654 54 : lyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeuGluValGluAs : 72 |||||!!:...:::......::: ||||||:!::!!|||||||||!!:||||||:! lyLeuMetGlyTyrPheLeuIleLeuCysSerLeuHisValPheLeuAspValGluAs 200655 : GATTGATGggttactttttaatattatgcAGTTTACACGTGTTTCTTGACGTAGAAAA : 200711 73 : pLeuTyrAsnLysIleLysLeuPheGlyProLeuIlePhePheLeuMetAla<->Phe : 90 !:!! !!!.|||||||||||||||! !||||||:!!.!..!!! !:!!||| .!! nIleLeuLysLysIleLysLeuPheValProLeuValLeuLeuCysLeuAlaThrIle 200712 : TATACTTAAAAAGATTAAATTGTTTGTTCCCCTAGTACTACTTTGCTTGGCTACGATT : 200768 91 : AlaLysTyrTyrLeuLeuIleTyrHisGlyAsnAspIleArgGluCysIleGluArgI : 110 !|||! !:!!|||! !:!! !|||! !:!!|||! ! ! !||| !|||!.!| LeuLysCysHisLeuSerValLeuHisAspAspAspThrTyrThrCysGlyGluHisI 200769 : TTGAAGTGTCATTTGTCGGTACTTCATGATGACGATACTTACACGTGTGGCGAGCATA : 200828 111 : leLysTrpAspTrpLysAsnIleThrTyrHisAspAsp : 122 ||||||||!!:|||!:! !! !..! ||||||::: leLysTrpGluTrpArgTyrCysValThrHisAspGlu 200829 : TAAAATGGGAGTGGAGGTATTGTGTCACGCACGACgag : 200866 vulgar: gi|383850508|ref|XP_003700837.1| 15 122 . KQ414889.1 200538 200866 + 203 M 16 48 F 0 4 M 58 174 G 0 3 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 200539 200866 203 + . gene_id 24 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 200539 200866 . + . KQ414889.1 exonerate:protein2genome:local exon 200539 200866 . + . insertions 3 ; deletions 0 ; frameshifts 4 KQ414889.1 exonerate:protein2genome:local similarity 200539 200866 203 + . alignment_id 24 ; Query gi|383850508|ref|XP_003700837.1| ; Align 200539 16 48 ; Align 200591 32 174 ; Align 200768 90 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 182 Query range: 294 -> 387 Target range: 206041 -> 206401 295 : ValIleMetGluSerLysSerAsnAspIleThrAsnThrValThrTyrAlaIleLeuL : 314 |||.!! !|||!!!:!!!:!|||:!!! !||| ..!:!!..!||| !! |||! ValPhe***GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuG 206042 : GTGTTTTAGGAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGC : 206099 315 : euThrSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGl : 333 !! !|||! !|||||| !:!!||||||.!.||||||||||||:!!|||:!! !!! lnIleSerCysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAs 206100 : AGATATCTTGTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGA : 206156 334 : uGln >>>> Target Intron 1 >>>> CysLysLysIleGlyGluMetThrT : 343 :||| 81 bp ! ! :!:||| !! :!!! pGln++ ++AsnHisValValGlyLeuThrSerC 206157 : TCAAgt.........................agAACCACGTCGTGGGATTGACATCTT : 206267 344 : yrMetThrGluTrpTyrArgLeuProGlyAsnLysLysLeuTyrCysIleMetIleIl : 362 !! !..!.!.|||||||||||||||..!!.. ! !! !! ! |||:!!||||| ysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIl 206268 : GCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAAT : 206324 363 : eAlaMetSerAsnSerSerMetLysLeuThrAlaGlySerMetValGluLeuSerIle : 381 |||||||||||||! ! !!!!:|||||||||||||||!.!||| !!|||:!!|||:!! eAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeu 206325 : TGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTA : 206381 382 : GluThrPheThrAsnVal : 387 ! !:!||||||:!!||| AlaSerPheThrAspVal 206382 : GCTAGTTTCACCGATGTA : 206401 vulgar: gi|383850508|ref|XP_003700837.1| 294 387 . KQ414889.1 206041 206401 + 182 M 40 120 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206042 206401 182 + . gene_id 25 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206042 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206042 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206042 206401 182 + . alignment_id 25 ; Query gi|383850508|ref|XP_003700837.1| ; Align 206042 295 120 ; Align 206243 335 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 333 -> 402 Target range: 244655 -> 244951 334 : GlnCysLysLysIleGlyGluMetThrTyrMetThrGluTrpTyrArgLeuProGlyA : 353 |||||| !|||:!!||||||:!!..!|||||||||!!:|||||| !|||||| !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 354 : snLysLysLeuTyrCysIleMetIleIleAlaMetSerAsnSerSerMetLysLeuTh : 372 ..!:!! ||| !!! |||:!!|||||| ! ||||||! ! !:!::!!:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 373 : rAlaGlySerMetValGluLeuSerIleGluThrPheThrAsn >>>> Target I : 387 |||||||!.!:!::!!.!.:!!|||:!! ! |||||| !:!! 89 rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAsp++ 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATgt............. : 244817 388 : ntron 1 >>>> ValValLysThrAlaPheAlaPheLeuAsnValLeuArgThrMe : 401 bp ||||||||||||!.!||||||!:!||||||:!!||| !! !|| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMe 244818 : ............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAAAT : 244946 402 : tThr : 402 |:!! tSer 244947 : GTCC : 244951 vulgar: gi|383850508|ref|XP_003700837.1| 333 402 . KQ414889.1 244655 244951 + 174 M 53 159 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244951 174 + . gene_id 26 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244656 244814 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244814 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244815 244816 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244815 244903 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244902 244903 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244904 244951 . + . KQ414889.1 exonerate:protein2genome:local exon 244904 244951 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244951 174 + . alignment_id 26 ; Query gi|383850508|ref|XP_003700837.1| ; Align 244656 334 159 ; Align 244904 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 163 Query range: 5 -> 113 Target range: 299659 -> 299989 6 : LysAspSerGluTyrGluArgHisValAsnLeuSerIleGlnTrpAsnArgTrpLeuL : 25 !:!:!!! !.!.|||:!!!.! !!:!!:!!! !!!!:!:||| ! !!:!||||||| ArgAsnTyrHisTyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuL 299660 : AGGAATTACCATTACCAAAATGACATACATTACACGCTGCAAATGTGCCAATGGTTGT : 299717 26 : euLysProIleGlyIleTrpProHisSerAspMet<-><->SerArgThrLysLysLe : 42 ||||||||||||||:!!|||! ! !|||... |||!:! !:!! ! || euLysProIleGlyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHisLe 299718 : TGAAACCTATCGGAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCT : 299774 43 : uTyrAspTrpPheThrTyrValValCysTyrGlyLeuIleSerPheLeuPheValPro : 61 | !... !! ! ..!:!!|||!:!..! !:!:! !|||:!! !!:!!||| uValSerIleValLeuMetThrIleCysPheSerSerLeuPhePheIleValLeuPro 299775 : CGTCTCGATCGTTCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCA : 299831 62 : CysSerMetTyrValPheLeuGluValGluAspLeuTyrAsnLysIleLysLeuPheG : 81 ! !.!! |||:!!|||!!!! !! !:!!..!:!!:!! !|||:!:|||:!!|||| SerGlyHisTyrIlePhePheAlaGluLysSerIleHisValLysValLysValPheG 299832 : TCCGGTCATTACATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCG : 299891 82 : lyProLeuIlePhePheLeuMetAlaPheAlaLysTyrTyrLeuLeuIleTyrHisGl : 100 |||||:!! !|||! !||| :!!.!!!.!||||||! !! !||| ! :!!|| lyProValGlyPheCysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAsnGl 299892 : GTCCGGTTGGTTTTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGG : 299948 101 : yAsnAspIleArgGluCysIleGluArgIleLysTrpAsp : 113 |..!! .!!..!..!||||||:!!!.!:!!:!! ! ||| yGlyAlaPheGluArgCysIleGlnHisValGluArgAsp 299949 : TGGCGCGTTCGAACGATGCATCCAACACGTCGAGAGAGAC : 299989 vulgar: gi|383850508|ref|XP_003700837.1| 5 113 . KQ414889.1 299659 299989 + 163 M 31 93 G 0 6 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299660 299989 163 + . gene_id 27 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299660 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299660 299989 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299660 299989 163 + . alignment_id 27 ; Query gi|383850508|ref|XP_003700837.1| ; Align 299660 6 93 ; Align 299759 37 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 331 -> 387 Target range: 234979 -> 235147 332 : AlaGluGlnCysLysLysIleGlyGluMetThrTyrMetThrGluTrpTyrArgLeuP : 351 .!!:!!||||||! |||:!!||||||! ..!||||||||||||||||||||||||| ThrGlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuP 234980 : ACTCAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTAC : 235037 352 : roGlyAsnLysLysLeuTyrCysIleMetIleIleAlaMetSerAsnSerSerMetLy : 370 || !!!.! ||| !! :!!|||||||||:!!! !|||!:!! ! !!!:|| roHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLy 235038 : CTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAA : 235094 371 : sLeuThrAlaGlySerMetValGluLeuSerIleGluThrPheThrAsnVal : 387 |:!!|||||||||!.!.!.:!!:!!:!!|||:!!! !|||||| !:!!||| sIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235095 : AATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: gi|383850508|ref|XP_003700837.1| 331 387 . KQ414889.1 234979 235147 + 151 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234980 235147 151 + . gene_id 28 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234980 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234980 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234980 235147 151 + . alignment_id 28 ; Query gi|383850508|ref|XP_003700837.1| ; Align 234980 332 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 332 -> 392 Target range: 277548 -> 277728 333 : GluGlnCysLysLysIleGlyGluMetThrTyrMetThrGluTrpTyrArgLeuProG : 352 ..!||||||||||||:!!||||||:!!..!|||||||||.!.|||||| !||||||! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 353 : lyAsnLysLysLeuTyrCysIleMetIleIleAlaMetSerAsnSerSerMetLysLe : 371 !!!. ! ! ||| !!! :!!:!:||||||:!!! |||!:! :::|||:: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 372 : uThrAlaGlySerMetValGluLeuSerIleGluThrPheThrAsnValValLysThr : 390 :|||||||||...::::::::::::|||:!: ! |||||| !:!!||| !..! ! eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspValArgSerLeu 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTACGTTCACTT : 277720 391 : AlaPhe : 392 !||| LeuPhe 277721 : CTTTTT : 277728 vulgar: gi|383850508|ref|XP_003700837.1| 332 392 . KQ414889.1 277548 277728 + 144 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277728 144 + . gene_id 29 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277549 277728 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277728 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277728 144 + . alignment_id 29 ; Query gi|383850508|ref|XP_003700837.1| ; Align 277549 333 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 333 -> 393 Target range: 238625 -> 238805 334 : GlnCysLysLysIleGlyGluMetThrTyrMetThrGluTrpTyrArgLeuProGlyA : 353 |||||| !|||:!!||||||:!!..!|||||||||!!:|||||| !|||||| !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 354 : snLysLysLeuTyrCysIleMetIleIleAlaMetSerAsnSerSerMetLysLeuTh : 372 ..!:!! ||| !!! |||:!!|||||| ! |||||| ! !:!:|||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 373 : rAlaGlySerMetValGluLeuSerIleGluThrPheThrAsnValValLysThrAla : 391 |||||||!.!:!::!!.!.:!!|||:!! ! |||||| !:!!||| !:!!||| ! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 392 : PheAla : 393 .!!||| LeuAla 238798 : CTTGCT : 238805 vulgar: gi|383850508|ref|XP_003700837.1| 333 393 . KQ414889.1 238625 238805 + 143 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238805 143 + . gene_id 30 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238805 143 + . alignment_id 30 ; Query gi|383850508|ref|XP_003700837.1| ; Align 238626 334 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 260 -> 300 Target range: 224128 -> 224248 261 : ArgIleLeuLysTyrLeuThrHisThrGluArgThrLeuGlnLeuIleSerPheAlaG : 280 !:! !! !!:!!:!|||||||||||||||!:!.!!||||||! !:!!||||||!.!| LysCysCysArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValG 224129 : AAATGTTGCAGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGG : 224186 281 : luPheLeuGlyCysThrValAspIleCysLeuLeuGlyTyrTyrValIleMetGluSe : 299 ||||||||||||||! !:!!:!!|||||||||||||||||||||||||||:!!! ! ! luPheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleValValAr 224187 : AATTTCTAGGCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTGGTACG : 224243 300 : rLys : 300 !||| gLys 224244 : AAAG : 224248 vulgar: gi|383850508|ref|XP_003700837.1| 260 300 . KQ414889.1 224128 224248 + 137 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224129 224248 137 + . gene_id 31 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224129 224248 . + . KQ414889.1 exonerate:protein2genome:local exon 224129 224248 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224129 224248 137 + . alignment_id 31 ; Query gi|383850508|ref|XP_003700837.1| ; Align 224129 261 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 333 -> 390 Target range: 254271 -> 254442 334 : GlnCysLysLysIleGlyGluMetThrTyrMetThrGluTrpTyrArgLeuProGlyA : 353 |||||| !|||:!!||||||:!!..!|||||||||!!:|||||| !|||||| !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 354 : snLysLysLeuTyrCysIleMetIleIleAlaMetSerAsnSerSerMetLysLeuTh : 372 ..!:!! ||| !!! |||:!!||||||.!! |||||| ! !:!::!!:!!|| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 373 : rAlaGlySerMetValGluLeuSerIleGluThrPheThrAsnValValLysThr : 390 |||||||...::: ...:::|||:!! ! |||||| !:!!||| !:!!||| rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThr 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 254442 vulgar: gi|383850508|ref|XP_003700837.1| 333 390 . KQ414889.1 254271 254442 + 137 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254442 137 + . gene_id 32 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254442 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254442 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254442 137 + . alignment_id 32 ; Query gi|383850508|ref|XP_003700837.1| ; Align 254272 334 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 333 -> 387 Target range: 264723 -> 264885 334 : GlnCysLysLysIleGlyGluMetThrTyrMetThrGluTrpTyrArgLeuProGlyA : 353 ||||||||||||:!!||||||:!!..!||||||:!!.!.|||||| !|||||| !! GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 354 : snLysLysLeuTyrCysIleMetIleIleAlaMetSerAsnSerSerMetLysLeuTh : 372 !. ! ! ||| !! |||:!:|||||| !! |||!:! ! !.!.|||!!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 373 : rAlaGlySerMetValGluLeuSerIleGluThrPheThrAsnVal : 387 |||||||!.!!!::!!.!.:!!|||!!: ! ||||||!:!:!!||| rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: gi|383850508|ref|XP_003700837.1| 333 387 . KQ414889.1 264723 264885 + 129 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264885 129 + . gene_id 33 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264885 129 + . alignment_id 33 ; Query gi|383850508|ref|XP_003700837.1| ; Align 264724 334 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 332 -> 392 Target range: 283273 -> 283453 333 : GluGlnCysLysLysIleGlyGluMetThrTyrMetThrGluTrpTyrArgLeuProG : 352 ..!||||||||||||:!!||||||:!!..!|||||||||.!.! !!:! !||||||! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 353 : lyAsnLysLysLeuTyrCysIleMetIleIleAlaMetSerAsnSerSerMetLysLe : 371 !!!. ! ! ||| !!! :!!:!:||||||:!!! |||!:! :::|||:: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 372 : uThrAlaGlySerMetValGluLeuSerIleGluThrPheThrAsnValValLysThr : 390 :||||||......:::::::::::!||| ! |||||| !:!!||| !..! ! eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspValArgSerLeu 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTACGTTCACTT : 283445 391 : AlaPhe : 392 !||| LeuPhe 283446 : CTTTTT : 283453 vulgar: gi|383850508|ref|XP_003700837.1| 332 392 . KQ414889.1 283273 283453 + 116 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283453 116 + . gene_id 34 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283453 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283453 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283453 116 + . alignment_id 34 ; Query gi|383850508|ref|XP_003700837.1| ; Align 283274 333 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 292 -> 338 Target range: 261718 -> 261856 293 : TyrTyrValIleMetGluSerLysSerAsnAspIleThrAsnThrValThrTyrAlaI : 312 ::::::::::::...|||!!! ..!.!.|||||| !||| ! !|||||| !! PhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheM 261719 : ttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCA : 261776 313 : leLeuLeuThrSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuVa : 331 !::!!|||! !:!!:!! !||||||:!!||||||.!!|||||||||||||||:!!:! etMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLe 261777 : TGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACT : 261833 332 : lAlaGluGlnCysLysLysIle : 338 !.!!|||||| :!! ! :!: uThrGluGlnValGlnHisLeu 261834 : AACGGAACAGGTACAACATTTG : 261856 vulgar: gi|383850508|ref|XP_003700837.1| 292 338 . KQ414889.1 261718 261856 + 110 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261719 261856 110 + . gene_id 35 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 261719 261856 . + . KQ414889.1 exonerate:protein2genome:local exon 261719 261856 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 261719 261856 110 + . alignment_id 35 ; Query gi|383850508|ref|XP_003700837.1| ; Align 261719 293 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 297 -> 334 Target range: 291368 -> 291479 298 : GluSerLysSerAsnAspIleThrAsnThrValThrTyrAlaIleLeuLeuThrSerL : 317 |||!!!:!!|||!:!||| ! !...! !:!!||||||!.!! !||||||||||||! GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 318 : euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln : 334 !!||||||||||||.!.||||||||||||:!!|||||||||:!! !! !||| heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAG : 291479 vulgar: gi|383850508|ref|XP_003700837.1| 297 334 . KQ414889.1 291368 291479 + 107 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 291479 107 + . gene_id 36 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 291479 107 + . alignment_id 36 ; Query gi|383850508|ref|XP_003700837.1| ; Align 291369 298 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 330 -> 396 Target range: 292380 -> 292578 331 : ValAlaGluGlnCysLysLysIleGlyGluMetThrTyrMetThrGluTrpTyrArgL : 350 ||| ! ! ||| !!!..:!!|||!.!.!. :!!||| ||||||||||||!.!| ValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnL 292381 : GTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATC : 292438 351 : euProGlyAsnLysLysLeuTyrCysIleMetIleIleAlaMetSerAsnSerSerMe : 369 ||||| !!...||| ! ! !! !:!!:!!:!::!!|||!!:!!!!!. ! !!!! euProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIl 292439 : TGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGAT : 292495 370 : tLysLeuThrAlaGlySerMetValGluLeuSerIleGluThrPheThrAsnValVal : 388 :|||||||||||||||!.!!!: !!! ||||||:!:.!.|||||| ! !||| ! eLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArg 292496 : CAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGT : 292552 389 : LysThrAlaPheAlaPheLeuAsn : 396 :!!:!! !.!.!.!!!.:!!:!! GluSerLysLeuValLeuIleHis 292553 : GAATCAAAACTAGTCTTGATACAC : 292578 vulgar: gi|383850508|ref|XP_003700837.1| 330 396 . KQ414889.1 292380 292578 + 106 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292381 292578 106 + . gene_id 37 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292381 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292381 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292381 292578 106 + . alignment_id 37 ; Query gi|383850508|ref|XP_003700837.1| ; Align 292381 331 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 295 -> 334 Target range: 234797 -> 234914 296 : IleMetGluSerLysSerAsnAspIleThrAsnThrValThrTyrAlaIleLeuLeuT : 315 |||:!: |||:!!..!!!.... ... ..!:!!|||!.!|||:!!! !. IleLeuThrSerGlnGluLysSerLysGluLysLeuAlaSerTyrValIleValTyrV 234798 : ATTTTAACTTCTCAGGAAAAgtcgaaggaaaaattagCTTCATACGTCATCGTGTACG : 234855 316 : hrSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl : 334 .!|||:!!|||||||||||||||||||||||||||||||||||| !:!!.!!||||| alSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGl 234856 : TGTCCATGACATTtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGCA : 234912 335 : n : 334 | n 234913 : G : 234914 vulgar: gi|383850508|ref|XP_003700837.1| 295 334 . KQ414889.1 234797 234914 + 101 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234798 234914 101 + . gene_id 38 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234798 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234798 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234798 234914 101 + . alignment_id 38 ; Query gi|383850508|ref|XP_003700837.1| ; Align 234798 296 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857305|ref|XP_003704145.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 1133 Query range: 0 -> 400 Target range: 1692073 -> 1696257 1 : MetArgLeuLeuHisSerLysAspArgSerIleIleTrpThrLeuPheLeuIleLy : 19 |||!.!|||:!!!!.|||||||||! !||||||:!!|||:!!!!!||||||!!:|| MetHisLeuValGlnSerLysAspIleSerIleValTrpSerPhePheLeuMetLy 1692074 : ATGCATTTAGTGCAGAGTAAAGATATCTCGATCGTTTGGTCGTTCTTTTTGATGAA : 1692128 20 : sValValGlyIleTrpIleAlaAsnAsnArgAlaGluGlnLeuArgArgAsnLeuA : 38 |:!!||||||:!:|||:!!||| !:!!..!|||||||||! !|||||||||!!!| sIleValGlyLeuTrpLeuAlaAlaAspGluAlaGluGlnArgArgArgAsnPheA 1692129 : AATCGTAGGTCTGTGGCTAGCCGCCGACGAGGCTGAACAACGTCGGAGAAATTTCG : 1692185 39 : laLeuValTyrThrLeuThrAlaLeuSerIleAlaMetGlyIleAlaLeuArgAsp : 56 |||||:!!|||||||||!.!|||:!!! !|||||| ! !!||||||:!!|||||| laLeuIleTyrThrLeuAsnAlaIlePheIleAlaSerCysIleAlaMetArgAsp 1692186 : CGCTGATTTACACGCTGAACGCGATTTTTATCGCTTCGTGTATAGCAATGAGAGAT : 1692239 57 : LeuHisPheSerTrpGlyAsnPheAsn >>>> Target Intron 1 >>>> : 66 :!!:!!!:!|||||||||||| ! ||| 1732 bp IleTyrTyrSerTrpGlyAsnValAsn++ ++ 1692240 : ATATACTATTCCTGGGGAAACGTGAACgt.........................ag : 1693999 67 : AspCysValTyrIlePheCysAsnIleLeuTyrLeuMetAsnGlyPhePheLysIl : 84 ||||||:!!|||:!! |||||||||||||||||| !! !! !||||||||||| AspCysIleTyrValGlyCysAsnIleLeuTyrLeuAlaIleValPhePheLysIl 1694000 : GACTGCATTTACGTCGGGTGCAACATTTTATACCTAGCGATCGTTTTCTTCAAGAT : 1694055 85 : eAlaValLeuSerAlaHisLysArgLysPhePheAspIleValLeuCysThrGluG : 103 | !||||||! ! !|||!:!! !:!!|||!:!! :!!:!! !! !|||:!!: eLeuValLeuTyrLysHisArgIleGluPheTyrGlyLeuIleArgPheThrGlnG 1694056 : CCTCGTTTTGTACAAGCACAGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAG : 1694112 104 : lnThrPheMetProProThrAspAspGlnThrGluArgLysIleLeuMetAspCys : 121 !!! !||| !! ! ! ! !!:!!..! !|||!:! !|||||| !!:||| luLysPheTrpHisPheAspTyrAsnSerArgGluLysLeuIleLeuSerGluCys 1694113 : AGAAATTCTGGCATTTCGACTATAATTCACGGGAGAAGTTAATTTTATCCGAGTGC : 1694166 122 : LysArgLeuCysAspTrpPheIleValPheIleMetPheCysValGlnGlyGlyCy : 140 |||!:!:!!||| ! ||||||||| !.!!! ||||||..!|||||| !|| LysLysIleCysThrValPheIleValAlaPheSerPheCysThrGlnGlyThrCy 1694167 : AAGAAGATATGTACCGTTTTCATCGTTGCCTTCAGCTTCTGTACTCAGGGCACGTG : 1694223 141 : sSerGlyTyrAlaIleThrProPheVal{G} >>>> Target Intron 2 >> : 150 |:!!||||||!.!:!:||||||.!!:!!{!} 100 bp sAlaGlyTyrValValThrProIleLeu{A}++ 1694224 : TGCTGGTTACGTAGTGACACCTATTTTA{g}gt....................... : 1694256 151 : >> {lu}AsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnLeuTrp : 166 { !}|||:!!|||||||||:!!|||||||||!!:||||||||||||:!!||| ++{la}AsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTrp 1694257 : ..ag{CA}AATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTGG : 1694401 167 : IleAspPheProThrGlyMetSerProTyrPheGluValPhePheThrIleGln : 185 :!!|||||||||||||||:!!|||||||||!:!||||||.!!|||! !|||||| ValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGln++ 1694402 : GTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGgt : 1694458 186 : >>>> Target Intron 3 >>>> IleLeuCysValTyrHisValAlaIleSe : 194 409 bp ! !||||||||||||||||||!.!|||!! ++ThrLeuCysValTyrHisValGlyIleCy 1694459 : .........................agACACTTTGCGTGTACCATGTCGGTATATG : 1694894 195 : rTyrPheCysPheAspAsnPheLeuCysIleLeuCysLeuAsnIleThrGlyGlnP : 213 !|||.!.||||||||||||.!!||| !!:!!||| !|||:!!:!:.!! !|||| sTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGlnP 1694895 : TTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAAT : 1694951 214 : heArgIleLeuGlnHisArgLeuArgSerLeuAlaSerMet<-><-><->GlnThr : 228 ||||||||||||||:!!|||!!!! !!:!|||::!!:!:!: |||||| heArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLysGlnThr 1694952 : TTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAACA : 1695005 229 : CysGluGlnAsnLeuAsnArgSerArgThrLysSerAlaIleGluArgLeuIleLy : 247 !! :::...|||... ... !|||!!.! !.!!:!!!!:!!!! !:!!:! AspGlyArgGluLeuGluIleGlyTyrThrAsnPheThrValAspSerTyrLeuGl 1695006 : GACGGTcgagaattggaaattggtTACACAAATTTCACAGTCGATAGTTACTTACA : 1695062 248 : sLeuLysSerCysIleArgHisHisGlnAlaLeuIleAsnTyrCysArgLysLeuG : 266 !||||||||||||:!:!:!:!!||||||||||||! !..!||||||!:!||||||| nLeuLysSerCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeuG 1695063 : ATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTGG : 1695119 267 : luAsnValPheThrLeuIleIleLeuGlyGluIleLeuPheValAlaLeuLeuLeu : 284 |||||:!!|||:!!|||:!!:!:||||||:!!:!:||||||:!!|||:!!:!!||| luAsnIlePheSerLeuLeuValLeuGlyGlnValLeuPheLeuAlaMetValLeu 1695120 : AGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTACTT : 1695173 285 : CysCysLeuGlyPheGlnValPheLeu >>>> Target Intron 4 >>>> : 294 ||| !:!!|||!:!|||:!!|||||| 415 bp CysLeuValGlyTyrGlnLeuPheLeu++ ++ 1695174 : TGCCTCGTGGGATATCAGCTATTTCTGgt.........................ag : 1695616 295 : MetPheThrProProAlaArgArgIleSerLeuValLeuSerMetMetAlaValSe : 312 ! !:!!||||||:!!|||!.!:!!.!!|||||||||!:!:!! !.!..!! ThrAspSerProProSerArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrLe 1695617 : ACAGACTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTTT : 1695672 313 : rSerGlnLeuLeuMetPheSerTyrCysTrpAspGlyLeuMetArgGluSerGlyA : 331 !!!!||||||!!!||||||!!!||| !!!! |||||||||! ||||||||| !: uCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGluSerMetA 1695673 : GTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATGG : 1695729 332 : snIleGlyGlnAlaAlaPheAlaGlyProTrpPheValAlaLysMetAsnGluGly : 349 !!:!!.!!::!|||!.!|||||| !!|||||| ! ! !|||:!!..!..! spValSerArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAspArgAsn 1695730 : ACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAAT : 1695783 350 : GlyArgAlaLeuArgGluAspValLeuIleIleIleMetArgAlaAsnLysAlaCy : 368 |||!:!::!:!!|||:!!..!:!!|||!!::!:|||||||||:!!|||!:!..!|| GlyLysSerValArgGlnSerMetLeuMetValIleMetArgSerAsnArgCysCy 1695784 : GGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTTG : 1695840 369 : sCysLeuThrAlaGlyGlyPhePheProValSerLeuGluThrPheThrAla >> : 386 |||||||||||||.!!|||||||||||||||||||||||||||!:!|||!.! sCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrGly++ 1695841 : CTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGgt.. : 1695896 387 : >> Target Intron 5 >>>> ValLeuSerThrAlaValSerTyrPheThrL : 396 319 bp |||||||||||||||:!!||||||||||||| ++ValLeuSerThrAlaMetSerTyrPheThrL 1695897 : .......................agGTCCTCAGCACTGCAATGTCATACTTTACAC : 1696243 397 : euLeuArgAsnSer : 400 ||||||||.!.||| euLeuArgGlnSer 1696244 : TACTGAGACAATCG : 1696257 vulgar: gi|383857305|ref|XP_003704145.1| 0 400 . KQ414915.1 1692073 1696257 + 1133 M 65 195 5 0 2 I 0 1728 3 0 2 M 84 252 S 0 1 5 0 2 I 0 96 3 0 2 S 1 2 M 34 102 5 0 2 I 0 405 3 0 2 M 42 126 G 0 9 M 67 201 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1692074 1696257 1133 + . gene_id 1 ; sequence gi|383857305|ref|XP_003704145.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1692074 1692268 . + . KQ414915.1 exonerate:protein2genome:local exon 1692074 1692268 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1692269 1692270 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1692269 1694000 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1693999 1694000 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694001 1694253 . + . KQ414915.1 exonerate:protein2genome:local exon 1694001 1694253 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694254 1694255 . + . intron_id 2 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1694254 1694353 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1694352 1694353 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694354 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694354 1694457 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 5 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 5 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 4 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696257 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696257 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1692074 1696257 1133 + . alignment_id 1 ; Query gi|383857305|ref|XP_003704145.1| ; Align 1692074 1 195 ; Align 1694001 66 252 ; Align 1694356 151 102 ; Align 1694867 185 126 ; Align 1695002 227 201 ; Align 1695618 294 276 ; Align 1696213 386 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857305|ref|XP_003704145.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 661 Query range: 64 -> 398 Target range: 1710860 -> 1713318 65 : AsnAspCysValTyrIlePheCysAsnIleLeuTyrLeuMetAsnGlyPhePheLy : 83 .!.||| :!!!:! !.!.|||!.!:!!|||! :!!!!:! ! !.!!|| GlnAspThrLeuPheAspIleCysThrLeuLeuSerValIleMetProAlaIleLy 1710861 : CAGGACACACTGTTCGACATATGCACTCTTCTGTCGGTGATAATGCCCGCTATCAA : 1710915 84 : sIleAlaValLeuSerAlaHisLysArgLysPhePheAspIleValLeuCysThrG : 102 |||| !:!!|||! ! !:!!|||..!:!!|||||| !:!::!!:!!! !|||| sIleIleIleLeuPheIleAsnLysGluGluPhePheArgLeuIleValTyrThrG 1710916 : AATAATCATCCTGTTTATCAACAAGGAGGAGTTTTTCCGTTTGATCGTGTACACAG : 1710972 103 : luGlnThrPheMetProProThrAspAspGlnThrGluArgLysIleLeuMetAsp : 120 ||!:! !|||||| ! ! ! !!:!!:!! !||||||||||||:!!.!.||| luArgGlnPheMetAsnGlyAspTyrAsnGluAspGluArgLysIleValPheAsp 1710973 : AGCGACAATTCATGAACGGGGATTACAACGAGGACGAGAGGAAGATTGTGTTCGAT : 1711026 121 : CysLysArgLeuCysAspTrpPheIleValPheIleMetPheCysValGlnGlyGl : 139 ||||||||||||||| !::|||! ! !|||:!! ! ! ..! !..! ! CysLysArgLeuCysThrPhePheThrCysPheLeuSerSerValThrLeuSerCy 1711027 : TGTAAACGCCTGTGTACATTCTTCACTTGTTTCCTCTCATCTGTGACTTTATCGTG : 1711083 140 : yCysSerGlyTyrAlaIleThrProPheVal{G} >>>> Target Intron 1 : 150 ! ! !..!|||!.!:!!||||||.!! !{ } 119 bp sValLeuSerTyrValValThrProIleTyr{M}++ 1711084 : CGTTCTCTCTTACGTCGTCACTCCAATTTAC{A}gt.................... : 1711119 151 : >>>> {lu}AsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnLeu : 165 { !}|||||||||!:!|||||||||!!:|||||||||||||||!!.:!! ++{et}AsnIleGlyArgAsnGluSerAspArgIleLeuProPheLysMet 1711120 : .....ag{TG}AATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATG : 1711280 166 : TrpIleAspPheProThrGlyMetSerProTyrPheGluValPhePheThrIleGl : 184 |||||||||.!.||||||..!|||!!!||||||||||||:::|||||||||:!!|| TrpIleAspIleProThrSerMetThrProTyrPheGluIlePhePheThrLeuGl 1711281 : TGGATTGATATACCGACATCGATGACACcgtattttgaaatattcttcaccTTACA : 1711337 185 : n >>>> Target Intron 2 >>>> IleLeuCysValTyrHisValAlaIl : 193 | 546 bp :!!|||! !!.!|||!!.:!!!.!:! n++ ++ValLeuSerAlaTyrGlnIleGlyVa 1711338 : Ggt.........................agGTTTTATCCGCGTATCAAATTGGCGT : 1711910 194 : eSerTyrPheCysPheAspAsnPheLeuCysIleLeuCysLeuAsnIleThrGlyG : 212 :|||||| !|||||||||||| !!|||||||||:!! !|||:!!:!:.!! !| lSerTyrGlyCysPheAspAsnValLeuCysIleMetAsnLeuHisLeuAlaThrG 1711911 : GAGTTACGGTTGCTTCGACAACGTTCTATGCATCATGAACCTACACTTGGCCACTC : 1711967 213 : lnPheArgIleLeuGlnHisArgLeu<-><-><->ArgSerLeuAlaSerMetGln : 227 |||||||||||||||||||||||||| !.!.!!||| !|||! ||| lnPheArgIleLeuGlnHisArgLeuValAsnIleAsnGlyLeuLysSerLysGln 1711968 : AGTTTCGAATACTGCAACATAGACTGGTGAATATAAACGGTCTGAAGAGCAAACAG : 1712021 228 : ThrCysGluGlnAsnLeuAsnArg<-><->SerArgThrLysSerAlaIleGluAr : 244 ||| |||:!!..! !!.. ! ..! !|||:!!! !||| !.!. ThrProGluLysGlyGluThrSerIleIleAspSerThrGluPheAlaAspAsnSe 1712022 : ACACCGGAGAAAGGTGAAACGTCGATTATAGATTCGACAGAATTTGCGGATAACTC : 1712078 245 : gLeuIleLysLeuLysSerCysIleArgHisHisGlnAlaLeuIleAsnTyrCysA : 263 !! ! ! !!!|||!!!|||:!!|||!!.||||||:!!|||!!: !!:!|||. rTyrAspValPheLysArgCysValArgGlnHisGlnSerLeuMetAlaPheCysG 1712079 : TTACGACGTTTTCAAAAGATGCGTTCGTCAACATCAATCTCTGATGGCTTTCTgcg : 1712135 264 : rgLysLeuGluAsnValPheThrLeuIleIleLeuGlyGluIleLeuPheValAla : 281 ..|||||||||...:::|||!:!:!!||||||||||||:!!:!:||| ! !!::! luLysLeuGluGluMetPheSerMetIleIleLeuGlyGlnLeuLeuValPheSer 1712136 : agaaactcgaagaaatgTTCAGTATGATTATACTGGGGCAATTGTTAGTGTTCAGT : 1712189 282 : LeuLeuLeuCysCysLeuGlyPheGlnValPheLeu >>>> Target Intron : 294 :!!!!!:!!||| ! !! !! !||||||.!!||| 142 bp IlePheMetCysLeuAspValCysGlnValLeuLeu++ 1712190 : ATTTTTATGTGTCTCGACGTGTGCCAAGTACTTCTGgt.................. : 1712230 295 : 3 >>>> MetPheThrProProAlaArgArgIleSerLeuValLeuSerMetMe : 309 !.!! !! !!.!!:!!:!!:: ......... ::: ++ProGlyAlaSerValGlyLysGlnMetIlePheThrPheHisLeuAl 1712231 : .......agCCAGGTGCATCTGTGGGTAAACAGAtgattttcacgtttcacctAGC : 1712415 310 : tAlaValSerSerGlnLeuLeuMetPheSerTyrCysTrpAspGlyLeuMetArgG : 328 !!.! !! !!!!|||||||||||||||!!!||| !!!! ||| !!:!!!!:! !| aGlyCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleThrG 1712416 : GGGATGTATGTGTCAATTGCTGATGTTTACGTACAGCTGCGATTGTATAATAACGG : 1712472 329 : luSerGlyAsnIleGlyGlnAlaAlaPheAlaGlyProTrpPheValAlaLysMet : 346 ||||| !|||:!: !:!!|||!.!!:!! !||||||||| ! ! !||| luSerLeuAsnValThrGluAlaValTyrAspGlyProTrpProArgLeuProMet 1712473 : AAAGTTTGAACGTGACGGAAGCGGTGTACGATGGACCATGGCCACGTTTGCCAATG : 1712526 347 : AsnGluGlyGlyArgAlaLeuArgGluAspValLeuIleIleIleMetArgAlaAs : 365 !:! ! !!|||||| !:!!|||:!!|||:!!:!!:!!:!!|||!!:|||:!!!. SerThrArgGlyArgMetIleArgLysAspLeuIleLeuValIleIleArgSerAr 1712527 : AGCACGAGAGGAAGAATGATAAGGAAGGATTTGATACTCGTTATCATAAGATCGAG : 1712583 366 : nLysAlaCysCysLeuThrAlaGlyGlyPhePheProValSerLeuGluThrPheT : 384 . ! !!||||||||||||||| !!||||||||| !:!!||||||||||||!:!| gValProCysCysLeuThrAlaArgGlyPhePheValIleSerLeuGluThrTyrT 1712584 : AGTACCTTGTTGCTTGACCGCCAGAGGATTCTTCGTAATATCTTTGGAAACGTATA : 1712640 385 : hrAla >>>> Target Intron 4 >>>> ValLeuSerThrAlaValSerT : 393 || ! 634 bp |||:!!|||||||||||||||| hrLys++ ++ValIleSerThrAlaValSerT 1712641 : CGAAGgt.........................agGTTATAAGTACAGCAGTGTCGT : 1713301 394 : yrPheThrLeuLeuArg : 398 ||||||||||||||||| yrPheThrLeuLeuArg 1713302 : ACTTCACACTGTTAAGG : 1713318 vulgar: gi|383857305|ref|XP_003704145.1| 64 398 . KQ414915.1 1710860 1713318 + 661 M 85 255 S 0 1 5 0 2 I 0 115 3 0 2 S 1 2 M 34 102 5 0 2 I 0 542 3 0 2 M 36 108 G 0 9 M 15 45 G 0 6 M 58 174 5 0 2 I 0 138 3 0 2 M 92 276 5 0 2 I 0 630 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1710861 1713318 661 + . gene_id 2 ; sequence gi|383857305|ref|XP_003704145.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1710861 1711116 . + . KQ414915.1 exonerate:protein2genome:local exon 1710861 1711116 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711117 1711118 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711117 1711235 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711234 1711235 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711236 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711236 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712227 . + . insertions 15 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712228 1712229 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712228 1712369 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1712368 1712369 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1712370 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712370 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713318 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713318 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1710861 1713318 661 + . alignment_id 2 ; Query gi|383857305|ref|XP_003704145.1| ; Align 1710861 65 255 ; Align 1711238 151 102 ; Align 1711886 185 108 ; Align 1712003 221 45 ; Align 1712054 236 174 ; Align 1712370 294 276 ; Align 1713280 386 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857305|ref|XP_003704145.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 579 Query range: 147 -> 407 Target range: 1706992 -> 1709261 148 : PheValGluAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnLeuTr : 166 ||| !|||!::||||||||||||||||||:!:||||||||| ! !!|||!!!|| PheSerGluSerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTr 1706993 : TTTTCAGAAAgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTG : 1707047 167 : pIleAspPheProThrGlyMetSerProTyrPheGluValPhePheThrIleGln : 185 |||||||||||||||| !|||!!!||||||!:!|||:!!!!.|||||| ||| pIleAspPheProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln+ 1707048 : GATTGACTTTCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGg : 1707104 186 : >>>> Target Intron 1 >>>> IleLeuCysValTyrHisValAlaIleS : 194 276 bp :!!!!! !||| :!!|||..!|||| + ++ValPheIleValMetTyrValCysIleS 1707105 : t.........................agGTTTTTATCGTAATGTACGTTTGCATAA : 1707407 195 : erTyrPheCysPheAspAsnPheLeuCysIleLeuCysLeuAsnIleThrGlyGln : 212 |||||.!!|||.!!|||||||||||||||!!::!! !|||:!!! !.!! !||| erTyrLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGln 1707408 : GCTACCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAA : 1707461 213 : PheArgIleLeuGlnHisArgLeuArgSerLeuAlaSerMetGlnThrCysGluGl : 231 |||||||||||||||:!!|||||| !!:!:!!..!.!! .!. ! !!..... PheArgIleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAs 1707462 : TTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcga : 1707518 232 : nAsnLeuAsnArgSerArgThrLysSerAlaIleGluArgLeuIleLysLeuLysS : 250 ....:::::::::... !!...!:!:!! !||| !!! ! !|||!!!|||! pLysIleSerLysLysThrProSerAsnSerAspGluCysTyrAlaLysPheLysA 1707519 : taaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAA : 1707575 251 : erCysIleArgHisHisGlnAlaLeuIleAsnTyrCysArgLysLeuGluAsnVal : 268 :!||||||!:!!!.|||||||||||||||.!.||||||!.!:!!|||:!!.!.||| snCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluVal 1707576 : ATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGGTG : 1707629 269 : PheThrLeuIleIleLeuGlyGluIleLeuPheValAlaLeuLeuLeuCysCysLe : 287 ||| !|||.!!:!:|||!.!:!!:!:|||.!! !!::!||||||:!!||| ! PheGlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAs 1707630 : TTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGA : 1707686 288 : uGlyPheGlnValPheLeu >>>> Target Intron 2 >>>> MetPheTh : 296 !|||!:! !||| :!! 457 bp !|| pGlyTyrLeuVal---Met++ ++GluAspTh 1707687 : TGGATATTTGGTG---ATGgt.........................agGAAGATAC : 1708167 297 : rProProAlaArgArgIleSerLeuValLeuSerMetMetAlaValSerSerGlnL : 315 |||| ! !!:!|||:!!!!!!!!:!!!!! !:!:! !!.! ! !!!!|||| rProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnL 1708168 : TCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAAC : 1708224 316 : euLeuMetPheSerTyrCysTrpAspGlyLeuMetArgGluSerGlyAsnIleGly : 333 |||||||||||!!!||| !!!! ||| !!|||!!:||||||||| !|||:!:!.! euLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAla 1708225 : TGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCC : 1708278 334 : GlnAlaAlaPheAlaGlyProTrpPheValAlaLysMetAsnGluGlyGlyArgAl : 352 .!.||| !!:!! ! !! !!|||.!! ! ! !|||:!!..!..!|||||| AsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMe 1708279 : AATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAAT : 1708335 353 : aLeuArgGluAspValLeuIleIleIleMetArgAlaAsnLysAlaCysCysLeuT : 371 !||||||:!!|||:!! !.!!:!!||| |||:!!!.. ! !!|||||||||| tLeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuT 1708336 : GCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCA : 1708392 372 : hrAlaGlyGlyPhePheProValSerLeuGluThrPheThrAla >>>> Targe : 386 ||||| !!|||||||||||||||||||||||||||!:!|||:!! hrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708393 : CTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt.......... : 1708439 387 : t Intron 3 >>>> ValLeuSerThrAlaValSerTyrPheThrLeuLeuArg : 398 759 bp :!!||||||||||||!.!||||||||||||||||||||| ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArg 1708440 : ...............agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTACGA : 1709232 399 : AsnSerAlaProAspLeuIleLysThr : 407 !!...!! ! !!!!::!!:!!:!!||| LysGlnGluAlaGluIleValGluThr 1709233 : AAACAAGAAGCAGAAATAGTTGAAACA : 1709261 vulgar: gi|383857305|ref|XP_003704145.1| 147 407 . KQ414915.1 1706992 1709261 + 579 M 37 111 5 0 2 I 0 272 3 0 2 M 107 321 G 1 0 M 1 3 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1706993 1709261 579 + . gene_id 3 ; sequence gi|383857305|ref|XP_003704145.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1706993 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1706993 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709261 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709261 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1706993 1709261 579 + . alignment_id 3 ; Query gi|383857305|ref|XP_003704145.1| ; Align 1706993 148 111 ; Align 1707380 185 321 ; Align 1707701 293 3 ; Align 1708161 294 276 ; Align 1709196 386 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857305|ref|XP_003704145.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 478 Query range: 147 -> 403 Target range: 1688047 -> 1690091 148 : PheValGluAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnLeuTr : 166 ||| !! !|||!!:.!!::!|||:!!|||!!:|||:!!|||||||||!!.:!!|| PheProAlaAsnMetSerArgAsnLysSerAspArgValLeuProPheLysMetTr 1688048 : TTTCCAGCAAATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTG : 1688102 167 : pIleAspPheProThrGlyMetSerProTyrPheGluValPhePheThrIleGln : 185 |:!!|||!::||| !..! !!!||||||!:!|||:!!.!.||||||.!!||| pValAspTrpProLeuSerAspThrProTyrTyrGluLeuMetPheThrPheGln+ 1688103 : GGTCGATTGGCCGCTATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAGg : 1688159 186 : >>>> Target Intron 1 >>>> IleLeuCysValTyrHisValAlaIleS : 194 179 bp ||||||||||||!!.:!!!.! !: + ++AlaLeuCysValTyrGlnIleGlyAlaA 1688160 : t.........................agGCGCTGTGCGTGTATCAAATCGGCGCCG : 1688365 195 : erTyrPheCysPheAspAsnPheLeuCysIleLeuCysLeuAsnIleThrGlyGln : 212 !!|||.!!|||! !|||!..|||!!!|||!!:||| !:!!:!!:!:! ! !!||| laTyrIleCysSerAspThrPhePheCysMetLeuAsnMetHisValIleCysGln 1688366 : CCTATATCTGCTCCGACACGTTTTTCTGCATGCTGAACATGCACGTGATCTGCCAG : 1688419 213 : PheArgIleLeuGlnHisArgLeuArgSerLeuAlaSerMetGlnThrCysGluGl : 231 ||||||||||||.!.:!!|||||| !!:!:!! ! !!:!: ! ..! PheArgIleLeuAsnTyrArgLeuLeuAsnMetTrpProValIleAspGluArgTh 1688420 : TTCCGTATACTAAATTACAGACTGTTGAACATGTGGCCGGTCATCGACGAGCGAAC : 1688476 232 : nAsnLeuAsnArgSerArgThrLysSerAlaIleGluArgLeuIleLysLeuLysS : 250 !|||:!!!.!..!! !! !!.!|||!!! ! !! !||||||! !. rAsnMetThrGluTyrThrAsnLysCys------------TyrThrLysLeuIleA 1688477 : GAACATGACCGAATACACGAACAAATGT------------TACACCAAGCTGATAG : 1688521 251 : erCysIleArgHisHisGlnAlaLeuIleAsnTyrCysArgLysLeuGluAsnVal : 268 .!||||||!:!:!!||||||:!!||||||.!.!:!||| !||||||||||||||| spCysIleLysAsnHisGlnSerLeuIleGluPheCysValLysLeuGluAsnVal 1688522 : ATTGCATCAAAAATCATCAGTCGTTGATCGAGTTCTGCGTGAAACTCGAGAACGTG : 1688575 269 : PheThrLeuIleIleLeuGlyGluIleLeuPheValAlaLeuLeuLeuCysCysLe : 287 !:!||||||! !|||||||||.!.|||:!! !! !!::!||||||:!!|||! ! TyrThrLeuThrIleLeuGlyHisIleValValPheSerLeuLeuMetCysPheAs 1688576 : TACACGTTGACTATACTCGGCCACATAGTGGTCTTCAGCTTGTTGATGTGCTTCGA : 1688632 288 : uGlyPheGlnValPheLeu >>>> Target Intron 2 >>>> MetPheTh : 296 ! !!:!:!!||| !!||| 816 bp .. pThrTyrGluValValLeu++ ++AlaLysVa 1688633 : CACGTACGAGGTAGTTCTGgt.........................agGCAAAGGT : 1689475 297 : rProProAlaArgArgIleSerLeuValLeuSerMetMetAlaValSerSerGlnL : 315 !||| !!.!!! !|||:!!! !!!!:!!!!! !|||!!:!.! !! !! !!..: lProThrThrThrArgLeuIlePheLeuPheHisMetIleGlySerPheIleHisI 1689476 : ACCTACCACGACGCGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCaca : 1689532 316 : euLeuMetPheSerTyrCysTrpAspGlyLeuMetArgGluSerGlyAsnIleGly : 333 :::::...|||:::||| !!!! ! !||||||!!:..!|||||| !:!!|||!.! leIlePhePheThrTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleAla 1689533 : taattttcttcacgtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCA : 1689586 334 : GlnAlaAlaPheAlaGlyProTrpPheValAlaLysMetAsnGluGlyGlyArgAl : 352 !|||.!!!:!|||||| !||| ||| ! !||||||:!!! !|||!:! ThrAlaThrTyrAlaGlyMetTrpThrValLeuProMetAsnLysValGlyLysMe 1689587 : ACAGCAACGTATGCAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAAT : 1689643 353 : aLeuArgGluAspValLeuIleIleIleMetArgAlaAsnLysAlaCysCysLeuT : 371 !:!!|||! !:!!:!! !:!!!!:! !:!:|||:!! :!! !!||||||:!!| tIleArgGlyAsnMetLysLeuMetThrValArgSerLeuGlnProCysCysIleT 1689644 : GATACGAGGAAATATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAA : 1689700 372 : hrAlaGlyGlyPhePheProValSerLeuGluThrPheThrAla >>>> Targe : 386 |||||||||||||||||||||||||||||:!!||| !|||||| hrAlaGlyGlyPhePheProValSerLeuLysThrAlaThrAla++ 1689701 : CTGCTGGTGGATTCTTTCCTGTCTCCTTGAAAACTGCTACCGCGgt.......... : 1689747 387 : t Intron 3 >>>> ValLeuSerThrAlaValSerTyrPheThrLeuLeuArg : 398 293 bp :!!:!!|||:!!.!!:!!|||||||||||||||:!!||| ++LeuMetSerSerThrMetSerTyrPheThrLeuMetArg 1689748 : ...............agCTAATGAGTTCCACAATGTCGTATTTCACGCTCATGAGA : 1690074 399 : AsnSerAlaProAsp : 403 .!.!!!:!! !!!!: GluArgSerAlaGlu 1690075 : GAGAGATCGGCTGAA : 1690091 vulgar: gi|383857305|ref|XP_003704145.1| 147 403 . KQ414915.1 1688047 1690091 + 478 M 37 111 5 0 2 I 0 175 3 0 2 M 56 168 G 4 0 M 49 147 5 0 2 I 0 812 3 0 2 M 92 276 5 0 2 I 0 289 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688048 1690091 478 + . gene_id 4 ; sequence gi|383857305|ref|XP_003704145.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1688048 1688158 . + . KQ414915.1 exonerate:protein2genome:local exon 1688048 1688158 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688159 1688160 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688159 1688337 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1688336 1688337 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1688338 1688652 . + . KQ414915.1 exonerate:protein2genome:local exon 1688338 1688652 . + . insertions 0 ; deletions 4 KQ414915.1 exonerate:protein2genome:local splice5 1688653 1688654 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688653 1689468 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1689467 1689468 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1689469 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689469 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690091 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690091 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688048 1690091 478 + . alignment_id 4 ; Query gi|383857305|ref|XP_003704145.1| ; Align 1688048 148 111 ; Align 1688338 185 168 ; Align 1688506 245 147 ; Align 1689469 294 276 ; Align 1690038 386 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857305|ref|XP_003704145.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 293 Query range: 147 -> 293 Target range: 1699025 -> 1699971 148 : PheValGluAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnLeuTr : 166 .!!:!! |||||||||:::|||...|||!!:|||:!:||||||||||||:!!|| IleLeuAlaAsnIleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTr 1699026 : ATTTTAgcaaatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTG : 1699080 167 : pIleAspPheProThrGlyMetSerProTyrPhe{Gl} >>>> Target Intr : 178 |:!!|||!!.||| !..!:!!|||||| !:!{||} 499 bp pValAspLeuProLeuSerValSerProThrTyr{Gl}-- 1699081 : GGTTGATTTGCCGCTGTCTGTGTCACCAACGTAC{GA}aa................ : 1699120 179 : on 1 >>>> {u}ValPhePheThrIleGlnIleLeuCysValTyrHisValAla : 192 {|}! !||| ! ! !|||:!!|||! !:!!|||||||||!.! ++{u}AspPheValPheAlaGlnValLeuSerLeuTyrHisValGly 1699121 : .........ag{A}GATTTTGTGTTTGCACAGGTTCTGTCTTTGTACCACGTTGGT : 1699657 193 : IleSerTyrPheCysPheAspAsnPheLeuCysIleLeuCysLeuAsnIleThrGl : 211 :!!!!!|||.!!||||||||||||.!!||||||:!::!! !|||:!! .!! ValCysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaTh 1699658 : GTATGTTACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTAC : 1699714 212 : yGlnPheArgIleLeuGlnHisArgLeuArgSerLeu<-><->AlaSerMetGlnT : 228 !||||||||||||||||||:!!|||||| !!:!||| .!!!:!! !:!! rGlnPheArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysG 1699715 : TCAATTTCGTATACTGCAATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGC : 1699771 229 : hrCysGluGlnAsnLeuAsnArgSerArgThrLysSerAlaIleGluArgLeuIle : 246 ! !!:.!.||| !::!!!!:!! ! !... !! ! |||!.!! ! ! lnValAspAspAsnGluSerSerAlaAlaLeuSerArgPheAlaGluAsnCysTyr 1699772 : AAGTAGATGACAATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTAT : 1699825 247 : Lys<->LeuLysSerCysIleArgHisHisGlnAlaLeuIleAsnTyrCysArgLy : 264 ||| !!!|||!:!|||:!!|||!!.|||||| !! !|||!..||||||!.!!: LysAlaPheLysAsnCysValArgGlnHisGlnAsnHisIleThrTyrCysHisAr 1699826 : AAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCATATCACGTACTGTCACAG : 1699882 265 : sLeuGluAsnValPheThrLeuIleIleLeuGlyGluIleLeuPheValAlaLeuL : 283 !|||.!..!.:!!||||||:!!|||:!!||||||.!.|||||| !! !!::!|||| gLeuAsnGluIlePheThrValIleValLeuGlyHisIleLeuValPheSerLeuL 1699883 : ATTGAACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGCCTTC : 1699939 284 : euLeuCysCysLeuGlyPheGlnValPheLeu : 293 ||:!!||| :!!||||||||||||.!!:!! euIleCysLeuValGlyPheGlnValLeuVal 1699940 : TGATATGTCTGGTTGGATTCCAAGTGCTCGTA : 1699971 vulgar: gi|383857305|ref|XP_003704145.1| 147 293 . KQ414915.1 1699025 1699971 + 293 M 30 90 S 0 2 5 0 2 I 0 495 3 0 2 S 1 1 M 45 135 G 0 6 M 24 72 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699026 1699971 293 + . gene_id 5 ; sequence gi|383857305|ref|XP_003704145.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1699026 1699117 . + . KQ414915.1 exonerate:protein2genome:local exon 1699026 1699117 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699118 1699119 . + . intron_id 1 ; splice_site "AA" KQ414915.1 exonerate:protein2genome:local intron 1699118 1699616 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699615 1699616 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699617 1699971 . + . KQ414915.1 exonerate:protein2genome:local exon 1699617 1699971 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699026 1699971 293 + . alignment_id 5 ; Query gi|383857305|ref|XP_003704145.1| ; Align 1699026 148 90 ; Align 1699618 179 135 ; Align 1699759 224 72 ; Align 1699834 248 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857305|ref|XP_003704145.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 244 Query range: 297 -> 392 Target range: 1702971 -> 1703256 298 : ProAlaArgArgIleSerLeuValLeuSerMetMetAlaValSerSerGlnLeuLe : 316 ||||||||||||:!!!!!!!!|||!!! !!!::!:!.! ! !!!!|||||||| ProAlaArgArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLe 1702972 : CCAGCGAGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATT : 1703026 317 : uMetPheSerTyrCysTrpAspGlyLeuMetArgGluSerGlyAsnIleGlyGlnA : 335 |:!:|||!!!||| !!!! |||||||||!!:..!|||||| !||||||||| | uLeuPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrA 1703027 : GCTATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTG : 1703083 336 : laAlaPheAlaGlyProTrpPheValAlaLysMetAsnGluGlyGlyArgAlaLeu : 353 || !!:! !|||||||||.!. ! ! !|||:!!:!!!.!|||||| !||| laIleTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeu 1703084 : CGATATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTG : 1703137 354 : ArgGluAspValLeuIleIleIleMetArgAlaAsnLysAlaCysCysLeuThrAl : 372 |||..!|||:!! !!!::!!|||:!:|||:!!!..|||:!! !!||||||||||| ArgArgAspLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAl 1703138 : AGAAGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGC : 1703194 373 : aGlyGlyPhePheProValSerLeuGluThrPheThrAlaValLeuSerThrAlaV : 391 |.!!|||||||||||||||||||||||||||! !|||.!!|||!!!!:! !:!! aSerGlyPhePheProValSerLeuGluThrCysThrThrValPheAsnPheSerP 1703195 : CAGCGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATTTCTCAT : 1703251 392 : alSer : 392 !!||| heSer 1703252 : TCTCT : 1703256 vulgar: gi|383857305|ref|XP_003704145.1| 297 392 . KQ414915.1 1702971 1703256 + 244 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702972 1703256 244 + . gene_id 6 ; sequence gi|383857305|ref|XP_003704145.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702972 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1702972 1703256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702972 1703256 244 + . alignment_id 6 ; Query gi|383857305|ref|XP_003704145.1| ; Align 1702972 298 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857305|ref|XP_003704145.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 230 Query range: 179 -> 294 Target range: 1702001 -> 1702355 180 : PhePheThrIleGlnIleLeuCysValTyrHisValAlaIleSerTyrPheCysPh : 198 ||| ! ! !|||:!!|||! !:!!|||||||||!.!:!!!!!|||.!!||||| PheValPheAlaGlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPh 1702002 : TTTGTGTTTGCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTT : 1702056 199 : eAspAsnPheLeuCysIleLeuCysLeuAsnIleThrGlyGlnPheArgIleLeuG : 217 |||||||.!!||||||:!::!! !|||:!! .!! !|||||||||||||||| eAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuG 1702057 : CGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGC : 1702113 218 : lnHisArgLeuArgSerLeu<-><->AlaSerMetGlnThrCysGluGlnAsnLeu : 233 ||:!!|||||| !!:!||| .!!!:!! !:!! ! !!:.!.||| ! lnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGlu 1702114 : AATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAA : 1702167 234 : AsnArgSerArgThrLysSerAlaIleGluArgLeuIleLys<->LeuLysSerCy : 251 ::!!!!:!! ! !... !! ! |||!.!! ! !||| !!!|||!:!|| SerSerAlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCy 1702168 : TCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTG : 1702224 252 : sIleArgHisHisGlnAlaLeuIleAsnTyrCysArgLysLeuGluAsnValPheT : 270 |:!!|||!!.|||||| !! !|||!..||||||!.!!:!|||.!..!.:!!|||| sValArgGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheT 1702225 : CGTACGACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCA : 1702281 271 : hrLeuIleIleLeuGlyGluIleLeuPheValAlaLeuLeuLeuCysCysLeuGly : 288 ||:!!|||:!!||||||.!.|||||| !! !!::!||||||:!!||| :!!||| hrValIleValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGly 1702282 : CGGTCATTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGA : 1702335 289 : PheGlnValPheLeuMet : 294 |||||||||.!!:!!:!: PheGlnValLeuValVal 1702336 : TTCCAAGTGCTCGTGGTA : 1702355 vulgar: gi|383857305|ref|XP_003704145.1| 179 294 . KQ414915.1 1702001 1702355 + 230 M 44 132 G 0 6 M 24 72 G 0 3 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702002 1702355 230 + . gene_id 7 ; sequence gi|383857305|ref|XP_003704145.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702002 1702355 . + . KQ414915.1 exonerate:protein2genome:local exon 1702002 1702355 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702002 1702355 230 + . alignment_id 7 ; Query gi|383857305|ref|XP_003704145.1| ; Align 1702002 180 132 ; Align 1702140 224 72 ; Align 1702215 248 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857305|ref|XP_003704145.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 208 Query range: 148 -> 231 Target range: 1681719 -> 1682091 149 : ValGluAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnLeuTrpIl : 167 ...|||||||||||||||!:!!!:..!|||||||||||||||||| !!! ! :! ThrGluAsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgVa 1681720 : acagaGAACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGT : 1681774 168 : e<->AspPheProThrGlyMetSerProTyrPheGluValPhePheThrIleGln : 185 : :!!!!.||||||..!:!!!!!||||||:::|||:::...|||..!|||:!! lPheAsnLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu+ 1681775 : GTTTAACTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGg : 1681831 186 : >>>> Target Intron 1 >>>> IleLeuCysValTyrHisValAlaIleS : 194 120 bp ! !|||! !||| ||| !!.!|||! + ++ThrLeuSerValValHisSerGlyIleC 1681832 : t.........................agACATTATCTGTGGTGCATTCGGGAATTT : 1681978 195 : erTyrPheCysPheAspAsnPheLeuCysIleLeuCysLeuAsnIleThrGlyGln : 212 !!!:!! !||||||||||||||||||||||||||| !!:!!:!!:!! !|||||| ysPheCysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGln 1681979 : GTTTCTGTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAG : 1682032 213 : PheArgIleLeuGlnHisArgLeuArgSerLeuAlaSerMetGlnThrCysGluGl : 231 |||!:!|||||||||:!!!:!|||!:!!!!:!! !||| !:!:::: ::::: PheLysIleLeuGlnAsnLysLeuGlnThrValLeuSerGluLysSerSerLysGl 1682033 : TTTAAGATTTTACAAAACAAACTCCAAACAGTATTGAGTGAGAAatcttcgaaaga : 1682089 232 : n : 231 : u 1682090 : a : 1682091 vulgar: gi|383857305|ref|XP_003704145.1| 148 231 . KQ414915.1 1681719 1682091 + 208 M 19 57 G 0 3 M 17 51 5 0 2 I 0 116 3 0 2 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681720 1682091 208 + . gene_id 8 ; sequence gi|383857305|ref|XP_003704145.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681720 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681720 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682091 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682091 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681720 1682091 208 + . alignment_id 8 ; Query gi|383857305|ref|XP_003704145.1| ; Align 1681720 149 57 ; Align 1681780 168 51 ; Align 1681951 185 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857305|ref|XP_003704145.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 4 -> 75 Target range: 1697515 -> 1697728 5 : HisSerLysAspArgSerIleIleTrpThrLeuPheLeuIleLysValValGlyIl : 23 |||!!!|||||| !:!!:!::!! !|||! !||||||!!:|||:!!||||||:! HisThrLysAspPheAlaLeuLeuMetThrSerPheLeuMetLysIleValGlyLe 1697516 : CACACCAAAGATTTTGCTCTGTTAATGACGTCGTTTTTAATGAAGATCGTCGGTCT : 1697570 24 : eTrpIleAlaAsnAsnArgAlaGluGlnLeuArgArgAsnLeuAlaLeuValTyrT : 42 !|||:!!|||!!.:!!!!! !|||:!!! !!:!|||...! !.!!|||:!!|||| uTrpLeuAlaLysAspSerLysGluGluArgLysArgArgTyrThrLeuIleTyrT 1697571 : TTGGTTAGCGAAAGACAGCAAGGAGGAACGCAAGCGTCGGTACACTTTGATCTATA : 1697627 43 : hrLeuThrAlaLeuSerIleAlaMetGlyIleAlaLeuArgAspLeuHisPheSer : 60 ||:!!..!|||:!!! !.!!!.!:!! !!:!: !!!!||||||!!!:!!!:!||| hrValValAlaIleLeuPheGlyValTrpValGlnPheArgAspPheTyrTyrSer 1697628 : CGGTGGTCGCGATTTTGTTTGGAGTGTGGGTGCAGTTCAGAGACTTCTATTACTCC : 1697681 61 : TrpGlyAsnPheAsnAspCysValTyrIlePheCysAsnIleLeu : 75 ||| !||||||..!! !!:!! ! ! !|||! !::!:!!:!! TrpProAsnPheGlyValSerLeuGlnThrPheSerSerValVal 1697682 : TGGCCGAATTTTGGCGTGAGTTTGCAAACTTTCTCTTCTGTCGTT : 1697728 vulgar: gi|383857305|ref|XP_003704145.1| 4 75 . KQ414915.1 1697515 1697728 + 153 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1697516 1697728 153 + . gene_id 9 ; sequence gi|383857305|ref|XP_003704145.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1697516 1697728 . + . KQ414915.1 exonerate:protein2genome:local exon 1697516 1697728 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1697516 1697728 153 + . alignment_id 9 ; Query gi|383857305|ref|XP_003704145.1| ; Align 1697516 5 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857305|ref|XP_003704145.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 313 -> 406 Target range: 1682598 -> 1683075 314 : GlnLeuLeuMetPheSerTyrCysTrpAspGlyLeuMetArgGluSerGlyAsnIl : 332 |||:::...:::...::: !!! :!!! !:!!|||..!:!!|||||| !|| GlnIlePheLeuIleThrLeuAsnCysAsnAspIleMetGluGlnSerGlyAlaIl 1682599 : cagatatttttaataacccTAAATTGCAACGACATAATGGAGCAAAGTGGCGCTAT : 1682653 333 : eGlyGlnAlaAlaPheAlaGlyProTrpPheValAlaLysMetAsnGluGlyGlyA : 351 |||| !||| !!:!::! !! !||| ! |||... : eGlyThrAlaIleTyrSerCysAsnTrpGluArgAsnValTyrAsnHisPheTyrG 1682654 : AGGAACAGCGATCTACAGTTGTAATTGGGAGAGGAAtgtttataatcatttttacc : 1682710 352 : rgAlaLeuArgGluAspValLeuIleIleIleMetArgAlaAsnLysAlaCysCys : 369 :! !!!|||:!!|||:!!:!!|||:!!!!::!:||||||!!.::: !!|||! ! ln---PheArgLysAspMetMetIleValMetValArgAlaLysArgProCysTyr 1682711 : AG---TTCAGAAAGGATATGATGATTGTAATGGTACGAGCGAAACGTCCTTGCTAC : 1682761 370 : LeuThrAlaGlyGlyPhePheProValSerLeuGluThrPheThrAla >>>> T : 386 :!!:!!|||!.! !|||||||||:!!|||||||||:!!|||||| IleSerAlaAlaLysPhePheProIleSerLeuGluSerPheThrLys++ 1682762 : ATTTCAGCAGCGAAATTCTTTCCAATCTCCCTTGAATCGTTCACGAaggt...... : 1682814 387 : arget Intron 1 >>>> ValLeuSerThrAlaValSerTyrPheThrLeuLe : 397 201 bp |||||||||.!!.!!!.!||||||!:!|||||||| ++ValLeuSerAlaThrAlaSerTyrTyrThrLeuLe 1682815 : ...................agGTGTTAAGTGCAACAGCATCTTATTATACACTGCT : 1683046 398 : uArgAsnSerAlaProAspLeuIleLys : 406 ||||!..! !! ! !|||:!!|||:!! uArgThrMetGluMetAspValIleGlu 1683047 : GCGTACAATGGAAATGGACGTCATAGAG : 1683075 vulgar: gi|383857305|ref|XP_003704145.1| 313 406 . KQ414915.1 1682598 1683075 + 148 M 38 114 G 1 0 M 33 99 5 0 2 I 0 197 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682599 1683075 148 + . gene_id 10 ; sequence gi|383857305|ref|XP_003704145.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1682599 1682811 . + . KQ414915.1 exonerate:protein2genome:local exon 1682599 1682811 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1682812 1682813 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1682812 1683012 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1683011 1683012 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1683013 1683075 . + . KQ414915.1 exonerate:protein2genome:local exon 1683013 1683075 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1682599 1683075 148 + . alignment_id 10 ; Query gi|383857305|ref|XP_003704145.1| ; Align 1682599 314 114 ; Align 1682713 353 99 ; Align 1683013 386 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 909 Query range: 7 -> 401 Target range: 1692094 -> 1696257 8 : AspLeuSerIleThrLeuSerThrPheCysMetLysTyrAlaGlyLeuTrpThrAl : 26 |||:!!||||||..!! !||| !|||! |||||| !!.!||||||||| !|| AspIleSerIleValTrpSerPhePheLeuMetLysIleValGlyLeuTrpLeuAl 1692095 : GATATCTCGATCGTTTGGTCGTTCTTTTTGATGAAAATCGTAGGTCTGTGGCTAGC : 1692149 27 : aLysAsnTyrAlaGluGluArgArgArgLysLeuGlyIleThrTyrSerIleTyrI : 45 | :!! ! ||||||:!!|||||||||!!.!!!!.!:!:! !|||!!!:!: !! aAlaAspGluAlaGluGlnArgArgArgAsnPheAlaLeuIleTyrThrLeuAsnA 1692150 : CGCCGACGAGGCTGAACAACGTCGGAGAAATTTCGCGCTGATTTACACGCTGAACG : 1692206 46 : leLeuCysPheAlaMetPhePheGluIleArgAspLeuTyrPheSerTrpGlyAsp : 63 :!!! !.!!||| !! !.!.! !!!:||||||:!!|||!:!|||||||||:!! laIlePheIleAlaSerCysIleAlaMetArgAspIleTyrTyrSerTrpGlyAsn 1692207 : CGATTTTTATCGCTTCGTGTATAGCAATGAGAGATATATACTATTCCTGGGGAAAC : 1692260 64 : LeuSer >>>> Target Intron 1 >>>> AlaAlaLeuTyrValAlaCys : 72 :!!!:! 1732 bp ! !..!:!!||||||!.!||| ValAsn++ ++AspCysIleTyrValGlyCys 1692261 : GTGAACgt.........................agGACTGCATTTACGTCGGGTGC : 1694019 73 : AsnLeuSerIleValAlaLeuThrSerPheLysValPheIleLeuValLeuTyrAr : 91 |||:!!! ! !:!!|||:!!..!! !||||||:!!.!!:!!||| ! !:!!|| AsnIleLeuTyrLeuAlaIleValPhePheLysIleLeuValLeuTyrLysHisAr 1694020 : AACATTTTATACCTAGCGATCGTTTTCTTCAAGATCCTCGTTTTGTACAAGCACAG : 1694076 92 : gSerGluLeuAlaAspLeuIleLeuTyrMetGlnGluHisPheTrpHisCysGluT : 110 |! !|||!!! !! |||||| !!:!! !|||||| ! |||||||||! !!!:| gIleGluPheTyrGlyLeuIleArgPheThrGlnGluLysPheTrpHisPheAspT 1694077 : AATAGAATTCTACGGGTTAATCAGGTTCACGCAAGAGAAATTCTGGCATTTCGACT : 1694133 111 : yrAspGluArgGluLysAlaIleLeuAlaSerCysArgLysThrCysIlePhePhe : 128 ||:!!..!||||||||| !||||||:!!..!|||!:!|||! !|||! ! !!||| yrAsnSerArgGluLysLeuIleLeuSerGluCysLysLysIleCysThrValPhe 1694134 : ATAATTCACGGGAGAAGTTAATTTTATCCGAGTGCAAGAAGATATGTACCGTTTTC : 1694187 129 : ThrIleSerValThrPheIleGlyGluCysAlaValPheSerTyrLeuValThrPr : 147 ! !:!!:!! !!!:!||| ! !:!! !!.!! ! !.!!|||:!!|||||||| IleValAlaPheSerPheCysThrGlnGlyThrCysAlaGlyTyrValValThrPr 1694188 : ATCGTTGCCTTCAGCTTCTGTACTCAGGGCACGTGTGCTGGTTACGTAGTGACACC : 1694244 148 : oIleVal{V} >>>> Target Intron 2 >>>> {al}AsnLeuGlyGlyA : 155 ||||:!!{!} 100 bp {.!}|||:!!||| !| oIleLeu{A}++ ++{la}AsnValGlyLysA 1694245 : TATTTTA{g}gt.........................ag{CA}AATGTTGGAAAAA : 1694368 156 : snGlyThrValArgLeuHisProPheAsnMetTrpLeuAsp<->AlaValLeuIle : 172 || !:!!! !|||:!! |||||||||||||||:!!||| !!..! !:!: snGlnSerGluArgMetLeuProPheAsnMetTrpValAspPheProThrGlyLeu 1694369 : ACCAATCCGAAAGGATGTTACCTTTCAACATGTGGGTTGACTTTCCTACAGGATTG : 1694422 173 : ThrProTyrPheGluIleAlaPhePheGlyGln >>>> Target Intron 3 : 184 :!!||||||!:!|||:!! !|||.!! !||| 409 bp SerProTyrTyrGluValLeuPheIleIleGln++ 1694423 : TCGCCTTATTATGAAGTCCTTTTCATCATACAGgt..................... : 1694460 185 : >>>> IleLeuIleLeuPheHisIleGlySerCysTyrPheCysPheAspAsnMe : 200 ! !||| !:!!!:!|||:!!|||! !||||||.!.||||||||||||!! ++ThrLeuCysValTyrHisValGlyIleCysTyrMetCysPheAspAsnIl 1694461 : ....agACACTTTGCGTGTACCATGTCGGTATATGTTACATGTGCTTCGACAACAT : 1694915 201 : tPheSerIlePheCysLeuHisLeuAlaThrGlnPheArgIleLeuGlnTyrArgP : 219 :.!!|||:!!.!. !||||||:!!||||||||||||||||||||||||||||||| eLeuSerLeuLeuAsnLeuHisValAlaThrGlnPheArgIleLeuGlnTyrArgP 1694916 : CCTCAGCCTTCTGAATCTTCACGTGGCCACTCAATTTCGTATCCTTCAATACCGAT : 1694972 220 : heGluThrMetCysGluIleSerGlu<->GluThrValHisAlaTyrLeuLysPhe : 236 || !!.!:!! !!.!.:!!! !||| :!!|||! ! ! |||:::... heMetAsnLeuSerAsnValIleGluLysGlnThrAspGlyArgGluLeuGluIle 1694973 : TCATGAATTTGAGTAATGTAATTGAGAAGCAAACAGACGGTcgagaattggaaatt : 1695026 237 : SerProThrAsnTyrAlaValAspValTyrGlnLysPheLysValTyrValGlnGl : 255 ... !||||||!:!.!!|||||| !||| !:!!!!.||| !! !|||||| ! GlyTyrThrAsnPheThrValAspSerTyrLeuGlnLeuLysSerCysValGlnTy 1695027 : ggtTACACAAATTTCACAGTCGATAGTTACTTACAATTGAAGAGTTGCGTGCAATA : 1695083 256 : nHisGlnAlaLeuIleAspTyrSerThrLeuLeuGluArgValPheThrLeuIleT : 274 ||||||||||||! !! !|||!!!! ! !||||||!.!:!!|||:!!|||:!!. rHisGlnAlaLeuThrGlyTyrCysLysLysLeuGluAsnIlePheSerLeuLeuV 1695084 : CCATCAGGCACTTACAGGCTATTGCAAAAAGTTGGAGAACATATTTTCGTTGCTTG : 1695140 275 : hrPheGlyGlnValMetPhePheSerValLeuIleCysLeuPheGlyTyrGlnIle : 292 .!.!!|||||||||:!:|||.!.:!!:!!:!!:!!|||||| ! |||||||||:!! alLeuGlyGlnValLeuPheLeuAlaMetValLeuCysLeuValGlyTyrGlnLeu 1695141 : TGCTTGGACAAGTGCTTTTCCTAGCCATGGTACTTTGCCTCGTGGGATATCAGCTA : 1695194 293 : ValMet >>>> Target Intron 4 >>>> AlaAspSerThrProGluArg : 301 !!:!! 415 bp .!!|||||| !!|||..!||| PheLeu++ ++ThrAspSerProProSerArg 1695195 : TTTCTGgt.........................agACAGACTCACCACCTTCGAGA : 1695636 302 : ArgThrIlePheIleCysLeuThrValGlySerThrSerLeuLeuPheMetPheTh : 320 !.!..! !!!.:!! ! ! !!.!|||!!! !!!!! !|||||||||||||| AsnValGlyLeuValLeuAsnLeuAlaGlyThrLeuCysGlnLeuPheMetPheTh 1695637 : AACGTCGGATTGGTACTCAACCTGGCAGGCACTTTGTGTCAACTTTTTATGTTCAC : 1695693 321 : rTyrSerCysHisGlyLeuMetGluGlnSerAspLeuLeuAlaAspAlaMetTyrS : 339 |||||||||| !!||||||! ..!:!!||| !:!!::! |||:!:!:!: rTyrSerCysAspGlyLeuThrArgGluSerMetAspValSerArgAlaValPheA 1695694 : GTACAGTTGCGATGGTTTGACAAGAGAGAGCATGGACGTTAGCAGAGCTGTATTTG : 1695750 340 : erThrMetTrpThrArgIleProMetAsnLysTyrGlyLysMetLeuArgAsnAsp : 357 !!! ! !|||.!!!.!:!:||||||:!!!:! !!||||||! :!!|||.!...! laArgProTrpAlaAsnLeuProMetAspArgAsnGlyLysSerValArgGlnSer 1695751 : CAAGACCGTGGGCAAATCTGCCAATGGATAGAAATGGGAAAAGTGTGCGACAAAGC : 1695804 358 : LeuMetMetValIleLeuArgAlaArgArgThrCysCysIleThrAlaAsnGlyPh : 376 :!!:!:|||||||||:!!|||:!!!.!||| !||||||:!!||||||!:!||||| MetLeuMetValIleMetArgSerAsnArgCysCysCysLeuThrAlaSerGlyPh 1695805 : ATGCTAATGGTGATCATGAGGTCGAACAGGTGTTGCTGCTTAACAGCCAGCGGGTT : 1695861 377 : ePheProValSerLeuGluThrPheThrThr >>>> Target Intron 5 >> : 387 ||||||||||||||||||||||!:!||| ! 319 bp ePheProValSerLeuGluThrTyrThrGly++ 1695862 : CTTTCCAGTTTCTCTCGAGACTTACACTGGGgt....................... : 1695896 388 : >> IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnSer : 401 :!!|||||||||||| !|||||||||||||||||||||.!.||| ++ValLeuSerThrAlaMetSerTyrPheThrLeuLeuArgGlnSer 1695897 : ..agGTCCTCAGCACTGCAATGTCATACTTTACACTACTGAGACAATCG : 1696257 vulgar: gi|383857331|ref|XP_003704158.1| 7 401 . KQ414915.1 1692094 1696257 + 909 M 58 174 5 0 2 I 0 1728 3 0 2 M 84 252 S 0 1 5 0 2 I 0 96 3 0 2 S 1 2 M 18 54 G 0 3 M 15 45 5 0 2 I 0 405 3 0 2 M 44 132 G 0 3 M 67 201 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1692095 1696257 909 + . gene_id 1 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1692095 1692268 . + . KQ414915.1 exonerate:protein2genome:local exon 1692095 1692268 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1692269 1692270 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1692269 1694000 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1693999 1694000 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694001 1694253 . + . KQ414915.1 exonerate:protein2genome:local exon 1694001 1694253 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694254 1694255 . + . intron_id 2 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1694254 1694353 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1694352 1694353 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694354 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694354 1694457 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 5 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 5 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 4 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696257 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696257 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1692095 1696257 909 + . alignment_id 1 ; Query gi|383857331|ref|XP_003704158.1| ; Align 1692095 8 174 ; Align 1694001 66 252 ; Align 1694356 151 54 ; Align 1694413 169 45 ; Align 1694867 184 132 ; Align 1695002 228 201 ; Align 1695618 295 276 ; Align 1696213 387 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 675 Query range: 7 -> 404 Target range: 1710221 -> 1713333 8 : AspLeuSerIleThrLeuSerThrPheCysMetLysTyrAlaGlyLeuTrpThrAl : 26 ||||||.!!.!!!:!:!!!!!:!!.!.! !:!!||| !|||||||||! !|| AspLeuGlyPheSerValThrSerMetPheValLysMetIleGlyLeuTrpMetAl 1710222 : GACTTAGGTTTCAGCGTGACTTCGATGTTCGTGAAAATGATCGGATTGTGGATGGC : 1710276 27 : aLysAsnTyrAlaGluGluArgArgArgLysLeuGlyIleThrTyrSerIleTyrI : 45 ||||||| ! !|||:!!!.! !|||!!.:!! !:!: !|||:::...:::. aLysAsnGlnPheGluGlnHisValArgAsnValThrLeuPheTyrThrPhePheP 1710277 : GAAAAATCAGTTCGAGCAACATGTCAGAAACGTGACGTTGTTCTACacattcttct : 1710333 46 : leLeuCysPheAlaMetPhePheGluIleArgAspLeuTyrPheSerTrpGlyAsp : 63 ..::: |||!.!.!.!:! ! ||| !! !:!!|||||| !|||||||||||| heValSerPheGlyPheTyrValGluAlaThrAsnLeuTyrHisSerTrpGlyAsp 1710334 : tcgtttccttcGGATTCTACGTGGAAGCTACGAACCTGTACCACTCGTGGGGCGAT : 1710387 64 : LeuSerAlaAlaLeuTyrValAla{C} >>>> Target Intron 1 >>>> : 72 ||||||!.!::! !:!!:!! !{ } 468 bp LeuSerValSerAsnHisIleGln{G}++ +- 1710388 : CTCAGCGTGAGTAATCACATTCAG{G}gt.........................at : 1710881 73 : {ys}AsnLeuSerIleValAlaLeuThrSerPheLysValPheIleLeuValLeuT : 90 {!!}!.!||| ! ||| !:!! !!:!!.!!|||:!!.!!|||||| !!:!! {ly}ThrLeuLeuSerValIleMetProAlaIleLysIleIleIleLeuPheIleA 1710882 : {GC}ACTCTTCTGTCGGTGATAATGCCCGCTATCAAAATAATCATCCTGTTTATCA : 1710936 91 : yrArgSerGluLeuAlaAspLeuIleLeuTyrMetGlnGluHisPheTrpHisCys : 108 !!!:!..!|||!!! ! !||||||:!!|||! :!!..!!!.||| !:!! ! snLysGluGluPhePheArgLeuIleValTyrThrGluArgGlnPheMetAsnGly 1710937 : ACAAGGAGGAGTTTTTCCGTTTGATCGTGTACACAGAGCGACAATTCATGAACGGG : 1710990 109 : GluTyrAspGluArgGluLysAlaIleLeuAlaSerCysArgLysThrCysIlePh : 127 !!:|||:!!||| !|||!:! !|||:!! !..!|||!:!::: !|||! !|| AspTyrAsnGluAspGluArgLysIleValPheAspCysLysArgLeuCysThrPh 1710991 : GATTACAACGAGGACGAGAGGAAGATTGTGTTCGATTGTAAACGCCTGTGTACATT : 1711047 128 : ePheThrIleSerValThrPheIleGlyGluCysAlaValPheSerTyrLeuValT : 146 ||||||| !! !:!!:!!! !:!: ! !! ..!|||.!!||||||:!!|||| ePheThrCysPheLeuSerSerValThrLeuSerCysValLeuSerTyrValValT 1711048 : CTTCACTTGTTTCCTCTCATCTGTGACTTTATCGTGCGTTCTCTCTTACGTCGTCA : 1711104 147 : hrProIleVal{V} >>>> Target Intron 2 >>>> {al}AsnLeuGly : 153 |||||||| !{:} 119 bp {!!}|||:!!||| hrProIleTyr{M}++ ++{et}AsnIleGly 1711105 : CTCCAATTTAC{A}gt.........................ag{TG}AATATTGGA : 1711244 154 : GlyAsnGlyThrValArgLeuHisProPheAsnMetTrpLeuAsp<->AlaValLe : 171 !!|||! !:!!! !|||:!!! ||||||!!.||||||:!!||| !!..!! ArgAsnGluSerAspArgIleLeuProPheLysMetTrpIleAspIleProThrSe 1711245 : AGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTGGATTGATATACCGACATC : 1711301 172 : uIleThrProTyrPheGluIleAlaPhePheGlyGln >>>> Target Intro : 184 !!!:|||||||||||||||||| ||| !||| 546 bp rMetThrProTyrPheGluIlePhePheThrLeuGln++ 1711302 : GATGACACcgtattttgaaatattcttcaccTTACAGgt................. : 1711342 185 : n 3 >>>> IleLeuIleLeuPheHisIleGlySerCysTyrPheCysPheAspA : 199 :!!||| ! !!:!!!.|||||| ! !!||| !|||||||||| ++ValLeuSerAlaTyrGlnIleGlyValSerTyrGlyCysPheAspA 1711343 : ........agGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGGTTGCTTCGACA : 1711931 200 : snMetPheSerIlePheCysLeuHisLeuAlaThrGlnPheArgIleLeuGlnTyr : 217 ||:!:.!.!!!|||.!. !|||||||||||||||||||||||||||||||||:!! snValLeuCysIleMetAsnLeuHisLeuAlaThrGlnPheArgIleLeuGlnHis 1711932 : ACGTTCTATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAATACTGCAACAT : 1711985 218 : ArgPheGluThrMetCysGluIleSerGluGluThrValHisAlaTyrLeuLysPh : 236 |||.!.! !!.!!!: !! :!:!.!...:!! !..!! ! ! ! !:!! ArgLeuValAsnIleAsnGlyLeuLysSerLysGlnThrProGluLysGlyGluTh 1711986 : AGACTGGTGAATATAAACGGTCTGAAGAGCAAACAGACACCGGAGAAAGGTGAAAC : 1712042 237 : eSer<-><-><->ProThrAsnTyrAlaValAspValTyrGlnLysPheLysValT : 252 ||| !!|||.!.!:!|||! !:!! !|||.!. |||||| !! rSerIleIleAspSerThrGluPheAlaAspAsnSerTyrAspValPheLysArgC 1712043 : GTCGATTATAGATTCGACAGAATTTGCGGATAACTCTTACGACGTTTTCAAAAGAT : 1712099 253 : yrValGlnGlnHisGlnAlaLeuIleAspTyrSerThrLeuLeuGluArgValPhe : 270 !|||!::|||||||||:!!|||!!:! !!:!! ||||||...:::||| ysValArgGlnHisGlnSerLeuMetAlaPheCysGluLysLeuGluGluMetPhe 1712100 : GCGTTCGTCAACATCAATCTCTGATGGCTTTCTgcgagaaactcgaagaaatgTTC : 1712153 271 : ThrLeuIleThrPheGlyGlnValMetPhePheSerValLeuIleCysLeuPheGl : 289 !:!:!!|||! !.!.||||||:!!:!: ! ||||||:!!!!!!!:|||||| !! SerMetIleIleLeuGlyGlnLeuLeuValPheSerIlePheMetCysLeuAspVa 1712154 : AGTATGATTATACTGGGGCAATTGTTAGTGTTCAGTATTTTTATGTGTCTCGACGT : 1712210 290 : yTyrGlnIleValMet >>>> Target Intron 4 >>>> AlaAspSerTh : 298 !! !|||:!!:!!:!! 142 bp !!! !:!!:! lCysGlnValLeuLeu++ ++ProGlyAlaSe 1712211 : GTGCCAAGTACTTCTGgt.........................agCCAGGTGCATC : 1712379 299 : rProGluArgArgThrIlePheIleCysLeuThrValGlySerThrSerLeuLeuP : 317 ! !! !:!!:!! |||||| !!.!|||!!!! !!!!! !|||. rValGlyLysGlnMetIlePheThrPheHisLeuAlaGlyCysMetCysGlnLeuL 1712380 : TGTGGGTAAACAGAtgattttcacgtttcacctAGCGGGATGTATGTGTCAATTGC : 1712436 318 : heMetPheThrTyrSerCysHisGlyLeuMetGluGlnSerAspLeuLeuAlaAsp : 335 !.|||||||||||||||||| !! !!:!!!!: !:!!||| !:!!.!!!!: euMetPheThrTyrSerCysAspCysIleIleThrGluSerLeuAsnValThrGlu 1712437 : TGATGTTTACGTACAGCTGCGATTGTATAATAACGGAAAGTTTGAACGTGACGGAA : 1712490 336 : AlaMetTyrSerThrMetTrpThrArgIleProMetAsnLysTyrGlyLysMetLe : 354 |||:!!|||..! ! ||| !!|||:!:||||||!:!! ! |||!:!|||:! AlaValTyrAspGlyProTrpProArgLeuProMetSerThrArgGlyArgMetIl 1712491 : GCGGTGTACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGAAGAATGAT : 1712547 355 : uArgAsnAspLeuMetMetValIleLeuArgAlaArgArgThrCysCysIleThrA : 373 !|||!!.||||||!!::!:||||||:!!|||:!!||| ! !!||||||:!:|||| eArgLysAspLeuIleLeuValIleIleArgSerArgValProCysCysLeuThrA 1712548 : AAGGAAGGATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTGCTTGACCG : 1712604 374 : laAsnGlyPhePheProValSerLeuGluThrPheThrThr >>>> Target I : 387 ||!..||||||||| !:!!||||||||||||!:!|||! ! 634 laArgGlyPhePheValIleSerLeuGluThrTyrThrLys++ 1712605 : CCAGAGGATTCTTCGTAATATCTTTGGAAACGTATACGAAGgt............. : 1712648 388 : ntron 5 >>>> IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsn : 400 bp :!!:!!|||||||||!.!|||||||||||||||||||||.!. ++ValIleSerThrAlaValSerTyrPheThrLeuLeuArgGln 1712649 : ............agGTTATAAGTACAGCAGTGTCGTACTTCACACTGTTAAGGCAA : 1713319 401 : SerValGluGln : 404 !!:!!|||:!! ArgIleGluGlu 1713320 : CGTATAGAGGAA : 1713333 vulgar: gi|383857331|ref|XP_003704158.1| 7 404 . KQ414915.1 1710221 1713333 + 675 M 64 192 S 0 1 5 0 2 I 0 464 3 0 2 S 1 2 M 77 231 S 0 1 5 0 2 I 0 115 3 0 2 S 1 2 M 18 54 G 0 3 M 15 45 5 0 2 I 0 542 3 0 2 M 54 162 G 0 9 M 57 171 5 0 2 I 0 138 3 0 2 M 92 276 5 0 2 I 0 630 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1710222 1713333 675 + . gene_id 2 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1710222 1710414 . + . KQ414915.1 exonerate:protein2genome:local exon 1710222 1710414 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1710415 1710416 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1710415 1710882 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1710881 1710882 . + . intron_id 0 ; splice_site "AT" KQ414915.1 exonerate:protein2genome:local cds 1710883 1711116 . + . KQ414915.1 exonerate:protein2genome:local exon 1710883 1711116 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711117 1711118 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711117 1711235 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1711234 1711235 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711236 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711236 1711339 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712227 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712228 1712229 . + . intron_id 4 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712228 1712369 . + . intron_id 4 KQ414915.1 exonerate:protein2genome:local splice3 1712368 1712369 . + . intron_id 3 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1712370 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712370 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 5 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 5 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 4 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713333 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713333 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1710222 1713333 675 + . alignment_id 2 ; Query gi|383857331|ref|XP_003704158.1| ; Align 1710222 8 192 ; Align 1710885 73 231 ; Align 1711238 151 54 ; Align 1711295 169 45 ; Align 1711886 184 162 ; Align 1712057 238 171 ; Align 1712370 295 276 ; Align 1713280 387 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 493 Query range: 150 -> 399 Target range: 1707001 -> 1709234 151 : AsnLeuGlyGlyAsnGlyThrValArgLeuHisProPheAsnMetTrpLeuAsp<- : 169 !:::::||| ||| ::: !|||:!!! ! ! !!|||.!.|||:!!||| SerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAspPh 1707002 : AgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGACTT : 1707056 170 : >AlaValLeuIleThrProTyrPheGluIleAlaPhePheGlyGln >>>> Tar : 184 !!..! !!!:|||||||||!:!|||||| !||| ..!||| eProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707057 : TCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt........ : 1707106 185 : get Intron 1 >>>> IleLeuIleLeuPheHisIleGlySerCysTyrPheC : 196 276 bp :!!!!!|||:!!.!.:!!:!! !!! ! !!|||.!!| ++ValPheIleValMetTyrValCysIleSerTyrLeuC 1707107 : .................agGTTTTTATCGTAATGTACGTTTGCATAAGCTACCTTT : 1707416 197 : ysPheAspAsnMetPheSerIlePheCysLeuHisLeuAlaThrGlnPheArgIle : 214 ||.!!||||||.!..!.!!!!!:.!! !|||||| !|||||||||||||||||| ysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIle 1707417 : GTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATA : 1707470 215 : LeuGlnTyrArgPheGluThrMetCysGluIleSerGluGluThrValHisAlaTy : 233 ||||||||||||.!...!!.!:!!|||! !!:!|||...!:: LeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSer---AspLysIl 1707471 : TTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgc---gataaaat : 1707524 234 : rLeuLysPheSerProThrAsnTyrAlaValAspValTyrGlnLysPheLysValT : 252 ||| :::|||:!!||| :!!! !!!: !||| ||||||||| !! eSerLysLysThrProSerAsn---SerAspGluCysTyrAlaLysPheLysAsnC 1707525 : ttcgaaaaaaacaCCGTCCAAT---TCGGACGAATGCTACGCTAAGTTCAAAAATT : 1707578 253 : yrValGlnGlnHisGlnAlaLeuIleAspTyrSerThrLeuLeuGluArgValPhe : 270 !:!!|||||||||||||||||||||!!:|||!!!!.! !|||:!!..!|||||| ysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluValPhe 1707579 : GCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGGTGTTC : 1707632 271 : ThrLeuIleThrPheGlyGlnValMetPhePheSerValLeuIleCysLeuPheGl : 289 !|||.!!..!.!!!.!||||||:!!.!!||||||:!!|||!!:|||||| !|| GlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAspGl 1707633 : GGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGG : 1707689 290 : yTyrGlnIleValMet >>>> Target Intron 2 >>>> AlaAspSerTh : 298 |||| :!:|||||| 457 bp ! !|||!!! ! yTyr---LeuValMet++ ++GluAspThrPr 1707690 : ATAT---TTGGTGATGgt.........................agGAAGATACTCC : 1708170 299 : rProGluArgArgThrIlePheIleCysLeuThrValGlySerThrSerLeuLeuP : 317 ! ! !!:!||| !! !|||:!:! !! ! !..!|||!!! !!!!! !|||! oIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuL 1708171 : CATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGT : 1708227 318 : heMetPheThrTyrSerCysHisGlyLeuMetGluGlnSerAspLeuLeuAlaAsp : 335 !.|||||||||||||||||| !! !!|||!!:..!:!!||| !:!!|||:!! euMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsn 1708228 : TGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAAT : 1708281 336 : AlaMetTyrSerThrMetTrpThrArgIleProMetAsnLysTyrGlyLysMetLe : 354 |||!!:|||..! ! !|||! !!.!:!:||||||:!!!:!! !|||::!||||| AlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLe 1708282 : GCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCT : 1708338 355 : uArgAsnAspLeuMetMetValIleLeuArgAlaArgArgThrCysCysIleThrA : 373 ||||!!.||||||! .!.|||||| !|||:!!||| ! !!||||||:!!|||| uArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrA 1708339 : GCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTG : 1708395 374 : laAsnGlyPhePheProValSerLeuGluThrPheThrThr >>>> Target I : 387 || !|||||||||||||||||||||||||||!:!|||:!! 759 laCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708396 : CTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt............. : 1708439 388 : ntron 3 >>>> IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArg : 399 bp ||||||||||||||||||||||||||||||||||||||| ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArg 1708440 : ............agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTACGA : 1709234 vulgar: gi|383857331|ref|XP_003704158.1| 150 399 . KQ414915.1 1707001 1709234 + 493 M 18 54 G 0 3 M 15 45 5 0 2 I 0 272 3 0 2 M 46 138 G 1 0 M 10 30 G 1 0 M 49 147 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707002 1709234 493 + . gene_id 3 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1707002 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707002 1707103 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 0 ; deletions 3 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709234 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709234 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1707002 1709234 493 + . alignment_id 3 ; Query gi|383857331|ref|XP_003704158.1| ; Align 1707002 151 54 ; Align 1707059 169 45 ; Align 1707380 184 138 ; Align 1707518 231 30 ; Align 1707548 242 147 ; Align 1707695 292 9 ; Align 1708161 295 276 ; Align 1709196 387 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 462 Query range: 180 -> 393 Target range: 1702007 -> 1703256 181 : PheGlyGlnIleLeuIleLeuPheHisIleGlySerCysTyrPheCysPheAspAs : 199 |||!.!|||:!!||| !|||!:!|||:!!||| !||||||.!!||||||||||| PheAlaGlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAs 1702008 : TTTGCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAA : 1702062 200 : nMetPheSerIlePheCysLeuHisLeuAlaThrGlnPheArgIleLeuGlnTyrA : 218 |:!:!!.!!!:!:.!. !|||||| !|||||||||||||||||||||||||||| nLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrA 1702063 : CCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACA : 1702119 219 : rgPheGluThrMetCysGluIleSerGluGluThrValHisAlaTyrLeuLysPhe : 236 ||!!...!!.!:!! !!!!:! !:!..!:!! !||| !!! ! !! !... ! rgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSer 1702120 : GGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGC : 1702173 237 : SerPro<->ThrAsnTyrAlaValAspValTyrGlnLysPheLysValTyrValGl : 254 :!! !! :!!..!!:!|||! !:!! !|||:!! !|||||| !! !|||!: AlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValAr 1702174 : GCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACG : 1702230 255 : nGlnHisGlnAlaLeuIleAspTyrSerThrLeuLeuGluArgValPheThrLeuI : 273 !||||||||| !! !||| |||!!! ! !|||.!...!:!!||||||:!!| gGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValI 1702231 : ACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCA : 1702287 274 : leThrPheGlyGlnValMetPhePheSerValLeuIleCysLeuPheGlyTyrGln : 291 ||..!.!!|||!!.:!!:!: !!||||||:!!|||||||||||| !!|||!:!||| leValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGln 1702288 : TTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAA : 1702341 292 : IleValMet >>>> Target Intron 1 >>>> AlaAspSerThrProGlu : 300 :!::!!:!! 607 bp .!! ! !||||||! ! ValLeuVal++ -+ThrProValThrProAla 1702342 : GTGCTCGTGgt.........................ggACACCTGTGACTCCAGCG : 1702975 301 : ArgArgThrIlePheIleCysLeuThrValGlySerThrSerLeuLeuPheMetPh : 319 |||||| !! !|||:!!! !! !! !||||||||| !!!!! !|||!!.:!:|| ArgArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLeuLeuPh 1702976 : AGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATTGCTATT : 1703032 320 : eThrTyrSerCysHisGlyLeuMetGluGlnSerAspLeuLeuAlaAspAlaMetT : 338 ||||||||||||| !!||||||!!:|||:!!||| !:!!!.! !|||!!:| eThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaIleT 1703033 : TACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGATAT : 1703089 339 : yrSerThrMetTrpThrArgIleProMetAsnLysTyrGlyLysMetLeuArgAsn : 356 || ! ! |||! !!.!:!:||||||:!!||| !|||!:!! !||||||!.. yrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArgArg 1703090 : ACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGAAGA : 1703143 357 : AspLeuMetMetValIleLeuArgAlaArgArgThrCysCysIleThrAlaAsnGl : 375 ||||||! |||||||||:!!|||:!!|||!:!:!! !!|||:!!||||||!:!|| AspLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSerGl 1703144 : GACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAGCGG : 1703200 376 : yPhePheProValSerLeuGluThrPheThrThrIleLeuSerThrAlaAlaSer : 393 |||||||||||||||||||||||||! !||||||:!!!!!!:! !:!! !||| yPhePheProValSerLeuGluThrCysThrThrValPheAsnPheSerPheSer 1703201 : ATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATTTCTCATTCTCT : 1703256 vulgar: gi|383857331|ref|XP_003704158.1| 180 393 . KQ414915.1 1702007 1703256 + 462 M 58 174 G 0 3 M 56 168 5 0 2 I 0 603 3 0 2 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702008 1703256 462 + . gene_id 4 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702008 1702352 . + . KQ414915.1 exonerate:protein2genome:local exon 1702008 1702352 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1702353 1702354 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1702353 1702959 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702958 1702959 . + . intron_id 0 ; splice_site "GG" KQ414915.1 exonerate:protein2genome:local cds 1702960 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1702960 1703256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702008 1703256 462 + . alignment_id 4 ; Query gi|383857331|ref|XP_003704158.1| ; Align 1702008 181 174 ; Align 1702185 239 168 ; Align 1702960 295 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 292 Query range: 0 -> 148 Target range: 1685751 -> 1687626 1 : MetGlnGlyGluArgTyrThrAspLeuSerIleThrLeuSerThrPheCysMetLy : 19 ||||||!.! !!:!|||! !|||:!!|||:!!! ... ||| :::|| MetGlnAlaThrLysTyrArgAspIleSerLeuLysCysGlyIlePheLeuLeuLy 1685752 : ATGCAGGCGACAAAATACAGGGATATTTCCCTCAAgtgtggaatttttcttttgaa : 1685806 20 : sTyrAlaGlyLeuTrpThrAlaLysAsnTyrAlaGluGluArgArgArgLysLeuG : 38 | ..!|||||||||! !:!!! !||| !!.!|||||||||||||||!:!!!! sLeuValGlyLeuTrpMetSerMetAsnSerValGluGluArgArgArgArgPheT 1685807 : attagtCGGCCTCTGGATGTCCATGAACAGCGTCGAGGAGCGTCGAAGGAGGTTCA : 1685863 39 : lyIleThrTyrSerIleTyrIleLeuCysPheAlaMetPhePheGluIleArgAsp : 56 !:!: ! |||:!!!:! !|||! !!:!!.!:!:!:! ! .!.:!!!.!||| hrLeuPheGlySerValPheAlaLeuSerTyrGlyValTyrValAsnValAsnAsp 1685864 : CGTTGTTCGGATCAGTTTTCGCCCTTTCTTACGGCGTTTACGTGAACGTAAACGAT : 1685917 57 : LeuTyrPheSerTrpGlyAspLeuSer >>>> Target Intron 1 >>>> : 66 :!! ! !|||!::! !||||||||| 1431 bp IleLeuHisSerPheAspAspLeuSer++ ++ 1685918 : ATTCTTCACAGCTTCGATGATCTGAGCgt.........................ag : 1687376 67 : AlaAlaLeuTyrValAlaCysAsnLeuSerIleValAlaLeuThrSerPheLysVa : 84 !..!:!!!:!:!!.!!|||||| ! ! !:!! !|||.!!! !||||||:! HisCysIlePheLeuThrCysAsnThrLeuCysIleLeuLeuAlaIlePheLysIl 1687377 : cATTGCATCTTTCTGACTTGCAACACACTGTGCATTCTTCTGGCGATATTTAAGAT : 1687432 85 : lPheIleLeuValLeuTyrArgSerGluLeuAlaAspLeuIleLeuTyrMetGlnG : 103 !||||||||| ! !:!!|||!!!|||!!! !!!::!!:!!|||||| !|||: ePheIleLeuSerAsnHisArgThrGluPheLysGluIleValLeuTyrAlaGlnL 1687433 : TTTCATACTAAGCAATCACAGAACGGAATTCAAGGAGATAGTCTTGTACGCGCAGA : 1687489 104 : luHisPheTrpHisCysGluTyrAspGluArgGluLysAlaIleLeuAlaSerCys : 121 !!|||||||||||| !.!.|||..!:!!..!|||!:!!.!:!!! !!.!..!||| ysHisPheTrpHisAspAsnTyrSerLysGluGluArgValLeuTyrGlyAspCys 1687490 : AGCATTTTTGGCATGATAATTACAGCAAAGAGGAGAGGGTGCTTTATGGAGATTGC : 1687543 122 : ArgLysThrCysIlePhePheThrIleSerValThrPheIleGlyGluCysAlaVa : 140 !:!!:! !|||! !.!.!::..!||| !:!! !|||:!! !:!!..!:!!:! GlnArgPheCysLysLeuTrpValIleLeuIleCysPheLeuThrGlnAlaSerLe 1687544 : CAGAGGTTCTGCAAACTATGGGTCATACTAATATGTTTCCTTACGCAAGCCTCTTT : 1687600 141 : lPheSerTyrLeuValThrProIle : 148 ! ! ! !|||!!!|||||||||:!! uValPheTyrPheValThrProLeu 1687601 : AGTGTTCTACTTTGTCACACCACTC : 1687626 vulgar: gi|383857331|ref|XP_003704158.1| 0 148 . KQ414915.1 1685751 1687626 + 292 M 65 195 5 0 2 I 0 1427 3 0 2 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1685752 1687626 292 + . gene_id 5 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1685752 1685946 . + . KQ414915.1 exonerate:protein2genome:local exon 1685752 1685946 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1685947 1685948 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1685947 1687377 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1687376 1687377 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1687378 1687626 . + . KQ414915.1 exonerate:protein2genome:local exon 1687378 1687626 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1685752 1687626 292 + . alignment_id 5 ; Query gi|383857331|ref|XP_003704158.1| ; Align 1685752 1 195 ; Align 1687378 66 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 253 Query range: 292 -> 399 Target range: 1689462 -> 1690076 293 : ValMetAlaAspSerThrProGluArgArgThrIlePheIleCysLeuThrValGl : 311 :!!..!||| ! ! !! !! !! !||| !||||||:!!! !! !! !:!!|| IleGlnAlaLysValProThrThrThrArgLeuIlePheLeuPheHisMetIleGl 1689463 : ATACAGGCAAAGGTACCTACCACGACGCGCCTCATATTCTTATTCCACATGATCGG : 1689517 312 : ySerThrSerLeuLeuPheMetPheThrTyrSerCysHisGlyLeuMetGluGlnS : 330 |||| !! !! :::......||||||||||||||| !||||||!!:|||:!!| ySerPheIleHisIleIlePhePheThrTyrSerCysGlyGlyLeuIleGluGluS 1689518 : TAGCTTCATCCacataattttcttcacgtACAGTTGTGGTGGTTTGATAGAAGAGA : 1689574 331 : erAspLeuLeuAlaAspAlaMetTyrSerThrMetTrpThrArgIleProMetAsn : 348 || !:!!||| |||! !|||:!! !||||||||| !:!:||||||||| erMetAspIleAlaThrAlaThrTyrAlaGlyMetTrpThrValLeuProMetAsn 1689575 : GTATGGATATTGCAACAGCAACGTATGCAGGAATGTGGACGGTTTTGCCAATGAAT : 1689628 349 : LysTyrGlyLysMetLeuArgAsnAspLeuMetMetValIleLeuArgAlaArgAr : 367 ||| !|||||||||:!!|||...:!!:!!! !:!::!!! !:!!|||:!! !!: LysValGlyLysMetIleArgGlyAsnMetLysLeuMetThrValArgSerLeuGl 1689629 : AAAGTTGGCAAAATGATACGAGGAAATATGAAGTTAATGACCGTAAGGTCGTTGCA : 1689685 368 : gThrCysCysIleThrAlaAsnGlyPhePheProValSerLeuGluThrPheThrT : 386 ! !!|||||||||||||||..!|||||||||||||||||||||:!!||| !|||. nProCysCysIleThrAlaGlyGlyPhePheProValSerLeuLysThrAlaThrA 1689686 : ACCGTGTTGCATAACTGCTGGTGGATTCTTTCCTGTCTCCTTGAAAACTGCTACCG : 1689742 387 : hr >>>> Target Intron 1 >>>> IleLeuSerThrAlaAlaSerTyrP : 395 !! 293 bp :!!:!!|||:!!.!! !||||||| la++ ++LeuMetSerSerThrMetSerTyrP 1689743 : CGgt.........................agCTAATGAGTTCCACAATGTCGTATT : 1690062 396 : heThrLeuLeuArg : 399 ||||||||:!!||| heThrLeuMetArg 1690063 : TCACGCTCATGAGA : 1690076 vulgar: gi|383857331|ref|XP_003704158.1| 292 399 . KQ414915.1 1689462 1690076 + 253 M 94 282 5 0 2 I 0 289 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1689463 1690076 253 + . gene_id 6 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1689463 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689463 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690076 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690076 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1689463 1690076 253 + . alignment_id 6 ; Query gi|383857331|ref|XP_003704158.1| ; Align 1689463 293 282 ; Align 1690038 387 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 244 Query range: 180 -> 294 Target range: 1699626 -> 1699971 181 : PheGlyGlnIleLeuIleLeuPheHisIleGlySerCysTyrPheCysPheAspAs : 199 |||!.!|||:!!||| !|||!:!|||:!!||| !||||||.!!||||||||||| PheAlaGlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAs 1699627 : TTTGCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAA : 1699681 200 : nMetPheSerIlePheCysLeuHisLeuAlaThrGlnPheArgIleLeuGlnTyrA : 218 |:!:!!.!!!:!:.!. !|||||| !|||||||||||||||||||||||||||| nLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrA 1699682 : CCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACA : 1699738 219 : rgPheGluThrMetCysGluIleSerGluGluThrValHisAlaTyrLeuLysPhe : 236 ||!!...!!.!:!! !!!!:! !:!..!:!! !||| !!! ! !! !... ! rgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSer 1699739 : GGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGC : 1699792 237 : SerPro<->ThrAsnTyrAlaValAspValTyrGlnLysPheLysValTyrValGl : 254 :!! !! :!!..!!:!|||! !:!! !|||:!! !|||||| !! !|||!: AlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValAr 1699793 : GCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACG : 1699849 255 : nGlnHisGlnAlaLeuIleAspTyrSerThrLeuLeuGluArgValPheThrLeuI : 273 !||||||||| !! !||| |||!!! ! !|||.!...!:!!||||||:!!| gGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValI 1699850 : ACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCA : 1699906 274 : leThrPheGlyGlnValMetPhePheSerValLeuIleCysLeuPheGlyTyrGln : 291 ||..!.!!|||!!.:!!:!: !!||||||:!!|||||||||||| !!|||!:!||| leValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGln 1699907 : TTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAA : 1699960 292 : IleValMet : 294 :!::!!:!: ValLeuVal 1699961 : GTGCTCGTA : 1699971 vulgar: gi|383857331|ref|XP_003704158.1| 180 294 . KQ414915.1 1699626 1699971 + 244 M 58 174 G 0 3 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699627 1699971 244 + . gene_id 7 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1699627 1699971 . + . KQ414915.1 exonerate:protein2genome:local exon 1699627 1699971 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699627 1699971 244 + . alignment_id 7 ; Query gi|383857331|ref|XP_003704158.1| ; Align 1699627 181 174 ; Align 1699804 239 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 201 Query range: 300 -> 399 Target range: 1682556 -> 1683051 301 : ArgArgThrIlePheIleCysLeuThrValGlySerThrSerLeuLeuPheMetPh : 319 !:!||| !:!:|||:!! !! ! !:!!|||.!!..!! :::|||:::.. LysArgLeuLeuPheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePheLeuIl 1682557 : AAACGATTGTTGTTCCTAAATTACTTTCTCGGTGGAGTGATacagatatttttaat : 1682611 320 : eThrTyrSerCysHisGlyLeuMetGluGlnSerAspLeuLeuAlaAspAlaMetT : 338 .||| !:!|||:!!! !:!!||||||||||||! ! !:!!!.! |||!!:| eThrLeuAsnCysAsnAspIleMetGluGlnSerGlyAlaIleGlyThrAlaIleT 1682612 : aacccTAAATTGCAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAGCGATCT : 1682668 339 : yrSerThrMetTrpThrArgIleProMetAsnLysTyrGlyLysMetLeuArgAsn : 356 ||||| !! ||| !|||! ||| ::: ..!!!!|||!!. yrSerCysAsnTrpGluArgAsnValTyrAsnHisPhe---TyrGlnPheArgLys 1682669 : ACAGTTGTAATTGGGAGAGGAAtgtttataatcatttt---taccAGTTCAGAAAG : 1682719 357 : AspLeuMetMetValIleLeuArgAlaArgArgThrCysCysIleThrAlaAsnGl : 375 |||:!!|||!!:|||!!::!!||||||!:!||| !!|||! !|||:!!||| AspMetMetIleValMetValArgAlaLysArgProCysTyrIleSerAlaAlaLy 1682720 : GATATGATGATTGTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGCAGCGAA : 1682776 376 : yPhePheProValSerLeuGluThrPheThrThr >>>> Target Intron 1 : 387 !|||||||||:!!|||||||||:!!||||||! 201 bp sPhePheProIleSerLeuGluSerPheThrLys++ 1682777 : ATTCTTTCCAATCTCCCTTGAATCGTTCACGAaggt.................... : 1682814 388 : >>>> IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArg : 399 :!:||||||.!!.!!|||||||||!:!|||||||||||| ++ValLeuSerAlaThrAlaSerTyrTyrThrLeuLeuArg 1682815 : .....agGTGTTAAGTGCAACAGCATCTTATTATACACTGCTGCGT : 1683051 vulgar: gi|383857331|ref|XP_003704158.1| 300 399 . KQ414915.1 1682556 1683051 + 201 M 50 150 G 1 0 M 35 105 5 0 2 I 0 197 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682557 1683051 201 + . gene_id 8 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1682557 1682811 . + . KQ414915.1 exonerate:protein2genome:local exon 1682557 1682811 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1682812 1682813 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1682812 1683012 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1683011 1683012 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1683013 1683051 . + . KQ414915.1 exonerate:protein2genome:local exon 1683013 1683051 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1682557 1683051 201 + . alignment_id 8 ; Query gi|383857331|ref|XP_003704158.1| ; Align 1682557 301 150 ; Align 1682707 352 105 ; Align 1683013 387 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 0 -> 67 Target range: 1700446 -> 1700647 1 : MetGlnGlyGluArgTyrThrAspLeuSerIleThrLeuSerThrPheCysMetLy : 19 ||| ..!:!!!:! !!! !|||:!!|||:!:!:!:!!!!!.!!|||! !:!!|| MetThrSerLysLysAsnArgAspValSerValSerValThrAlaPheTyrLeuLy 1700447 : ATGACTTCGAAGAAGAACAGGGACGTATCAGTGAGCGTCACAGCTTTCTACTTGAA : 1700501 20 : sTyrAlaGlyLeuTrpThrAlaLysAsnTyrAlaGluGluArgArgArgLysLeuG : 38 | ! !|||!!!||| !||| ! !.!|||! !|||:!!||||||||||||!!!! sIleIleGlyPheTrpLeuAlaAspThrTyrGluGluLysArgArgArgLysPheA 1700502 : AATCATCGGCTTCTGGTTAGCTGACACTTACGAGGAGAAACGTCGAAGAAAGTTCG : 1700558 39 : lyIleThrTyrSerIleTyrIleLeuCysPheAlaMetPhePheGluIleArgAsp : 56 .! !.!! !!!!||| !!!:||| ! !|||:!!.!..!!|||:!:|||||| laGlnAsnCysThrIleLeuMetLeuMetCysAlaValLeuLeuGluValArgAsp 1700559 : CGCAGAATTGCACGATACTTATGCTTATGTGCGCTGTGCTGCTTGAGGTGAGGGAT : 1700612 57 : LeuTyrPheSerTrpGlyAspLeuSerAlaAla : 67 :!!||| !! !|||||||||!!!.!!!.!::! IleTyrHisIleTrpGlyAspPheGlyValSer 1700613 : ATCTATCACATCTGGGGAGATTTCGGCGTAAGT : 1700647 vulgar: gi|383857331|ref|XP_003704158.1| 0 67 . KQ414915.1 1700446 1700647 + 136 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1700447 1700647 136 + . gene_id 9 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1700447 1700647 . + . KQ414915.1 exonerate:protein2genome:local exon 1700447 1700647 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1700447 1700647 136 + . alignment_id 9 ; Query gi|383857331|ref|XP_003704158.1| ; Align 1700447 1 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 0 -> 67 Target range: 1704894 -> 1705095 1 : MetGlnGlyGluArgTyrThrAspLeuSerIleThrLeuSerThrPheCysMetLy : 19 ||| ..!:!!!:! !!! !|||:!!|||:!:!:!:!!!!!.!!|||! !:!!|| MetThrSerLysLysAsnArgAspValSerValSerValThrAlaPheTyrLeuLy 1704895 : ATGACTTCGAAGAAGAACAGGGACGTATCAGTGAGCGTCACAGCTTTCTACTTGAA : 1704949 20 : sTyrAlaGlyLeuTrpThrAlaLysAsnTyrAlaGluGluArgArgArgLysLeuG : 38 | ! !|||!!!||| !||| ! !.!|||! !|||:!!||||||||||||!!!! sIleIleGlyPheTrpLeuAlaAspThrTyrGluGluLysArgArgArgLysPheA 1704950 : AATCATCGGCTTCTGGTTAGCTGACACTTACGAGGAGAAACGTCGAAGAAAGTTCG : 1705006 39 : lyIleThrTyrSerIleTyrIleLeuCysPheAlaMetPhePheGluIleArgAsp : 56 .! !.!! !!!!||| !!!:||| ! !|||:!!.!..!!|||:!:|||||| laGlnAsnCysThrIleLeuMetLeuMetCysAlaValLeuLeuGluValArgAsp 1705007 : CGCAGAATTGCACGATACTTATGCTTATGTGCGCTGTGCTGCTTGAGGTGAGGGAT : 1705060 57 : LeuTyrPheSerTrpGlyAspLeuSerAlaAla : 67 :!!||| !! !|||||||||!!!.!!!.!::! IleTyrHisIleTrpGlyAspPheGlyValSer 1705061 : ATCTATCACATCTGGGGAGATTTCGGCGTAAGT : 1705095 vulgar: gi|383857331|ref|XP_003704158.1| 0 67 . KQ414915.1 1704894 1705095 + 136 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1704895 1705095 136 + . gene_id 10 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1704895 1705095 . + . KQ414915.1 exonerate:protein2genome:local exon 1704895 1705095 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1704895 1705095 136 + . alignment_id 10 ; Query gi|383857331|ref|XP_003704158.1| ; Align 1704895 1 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 161 -> 222 Target range: 1681764 -> 1682067 162 : ProPheAsnMetTrpLeuAspAlaValLeuIleThrProTyrPheGluIleAlaPh : 180 ||||||!..:!!!:: ! !!..!! !:!:|||||||||:::|||||| || ProPheArgValPheAsnLeuProThrSerLeuThrProTyrTyrGluIleLeuPh 1681765 : CCATTCAGAGTGTTTAACTTGCCTACGTCTTTGACGCCgtattatgaaatattgtt : 1681819 181 : ePheGlyGln >>>> Target Intron 1 >>>> IleLeuIleLeuPheHi : 189 | ! !:!! 120 bp ! !||| !:!! ! || eValIleGlu++ ++ThrLeuSerValValHi 1681820 : cGTGATAGAGgt.........................agACATTATCTGTGGTGCA : 1681966 190 : sIleGlySerCysTyrPheCysPheAspAsnMetPheSerIlePheCysLeuHisL : 208 | |||! !|||!:!! !||||||||||||.!..!.!!!|||.!. !!:!!|||: sSerGlyIleCysPheCysCysPheAspAsnPheLeuCysIleLeuSerMetHisV 1681967 : TTCGGGAATTTGTTTCTGTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACG : 1682023 209 : euAlaThrGlnPheArgIleLeuGlnTyrArgPheGluThrMet : 222 !!!.! !||||||!:!||||||||| !!!:!.!!:!!|||:!: alGlyGlyGlnPheLysIleLeuGlnAsnLysLeuGlnThrVal 1682024 : TCGGTGGACAGTTTAAGATTTTACAAAACAAACTCCAAACAGTA : 1682067 vulgar: gi|383857331|ref|XP_003704158.1| 161 222 . KQ414915.1 1681764 1682067 + 129 M 22 66 5 0 2 I 0 116 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681765 1682067 129 + . gene_id 11 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681765 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681765 1681830 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682067 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682067 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681765 1682067 129 + . alignment_id 11 ; Query gi|383857331|ref|XP_003704158.1| ; Align 1681765 162 66 ; Align 1681951 184 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 300 -> 388 Target range: 1678488 -> 1678746 301 : ArgArgThrIlePheIleCysLeuThrValGlySerThrSerLeuLeuPheMetPh : 319 !:!|||! !:!!!:!||| ! !! !|||!.!|||..!||| !|||!:::!!.! LysArgMetValTyrIleMetTyrMetValAlaSerValSerGluLeuTrpLeuIl 1678489 : AAACGCATGGTCTACATCATGTACATGGTTGCCTCAGTGTCAGAATTATGGTTGAT : 1678543 320 : eThrTyrSerCysHisGlyLeuMetGluGlnSerAspLeuLeuAlaAspAlaMetT : 338 ...! !!! !!! !|||! !!.||| ! !:!!!.!|||||||||| eValArgThrValAspGluLeuThrThrHisSerLysAlaIleGlyAspAlaMetT 1678544 : AGTCCGAACCGTAGACGAACTGACCACTCATAGCAAAGCGATCGGCGATGCGATGT : 1678600 339 : yrSerThrMetTrpThrArgIleProMetAsnLysTyrGlyLysMetLeuArgAsn : 356 |||||:!! ||| ! ||| ......||| ||| |||::: yrSerSerAspTrpGlyValIle---PheGlyLysLeuGluLysLysLeuLysPhe 1678601 : ATTCCTCGGATTGGGGAGTgatc---tttggaaaattggagaagaaattaaaattt : 1678651 357 : AspLeuMetMetValIleLeuArgAlaArgArgThrCysCysIleThrAlaAsnGl : 375 |||! !! !:!!:!!:!!|||:!!! !..!||||||! !!!:! !||| || AlaLeuThrThrMetValIleArgSerIleGluThrCysSerMetLysAla---Gl 1678652 : gcctTGACGACGATGGTTATCAGATCGATCGAGACGTGTTCTATGAAAGCT---GG : 1678705 376 : yPhePheProValSerLeuGluThrPheThrThrIleLeu : 388 ||||||| !!|||||| !||||||||||||:!!:!!:!! yPhePheAlaValSerSerGluThrPheThrSerValIle 1678706 : CTTCTTTGCGGTCTCCAGTGAGACGTTTACATCGGTAATT : 1678746 vulgar: gi|383857331|ref|XP_003704158.1| 300 388 . KQ414915.1 1678488 1678746 + 113 M 45 135 G 1 0 M 27 81 G 1 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1678489 1678746 113 + . gene_id 12 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1678489 1678746 . + . KQ414915.1 exonerate:protein2genome:local exon 1678489 1678746 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local similarity 1678489 1678746 113 + . alignment_id 12 ; Query gi|383857331|ref|XP_003704158.1| ; Align 1678489 301 135 ; Align 1678624 347 81 ; Align 1678705 375 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 311 -> 399 Target range: 807317 -> 807581 312 : MetIleLeuValSerValThrPheAsnValPheIleMetCysTyrIleGlyGluValL : 331 :!::!::!!|||!!!:!! !.!!.!.:!!!:!:!! ..!||| |||.!...!| ValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrL 807318 : GTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACAC : 807375 332 : euMetGluGlnCysAsnArgValAlaAspValValTyrMetThrAsnTrpTyrCysMe : 350 || !..!!:! !.!...!:!!|||.!.!.!!.!||| :!! !|||||| !! euGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCy 807376 : TCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTG : 807432 351 : tProTyrArgSerIleLeuAspLeuIleLeuIleIleSerArgSerAsnValValThr : 369 ! ! !.!:!! ! !||||||:!!||||||||| !|||.!!||| ! ! ! sHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyr 807433 : CCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTAT : 807489 370 : LysIleThrAlaGlyLysValIleTyrMetSerIleTyrThrPheGlyAspValLeuL : 389 :::||||||||||||||| !!:!! |||!:!:!!!:!|||||| !!!::!!|||| ArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuL 807490 : CGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGA : 807549 390 : ysThrAlaPheThrTyrLeuAsnIleLeuArg : 399 ||.!!:!! !:!!||||||::!:!!:!!!:! ysAlaSerGlySerTyrLeuSerValMetLys 807550 : AAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: gi|383850520|ref|XP_003700843.1| 311 399 . KQ414940.1 807317 807581 + 150 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807318 807581 150 + . gene_id 1 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807318 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807318 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807318 807581 150 + . alignment_id 1 ; Query gi|383850520|ref|XP_003700843.1| ; Align 807318 312 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 295 -> 403 Target range: 807257 -> 807581 296 : GlyTyrTyrValLeuLeuTyrTrpAlaLeuHisAspLeuGlnAsnMetValThrCysS : 315 |||!:! ! !!|||:!! ! !::! ! ! ||| ! :!!! ! !!! GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 316 : erIleIleLeuPheSerMetSerCysAsnIlePheValValCysPheIleGlyGluLy : 334 !:!!:!::!! ! !!!:!! ! !.!.:!:!:!:!! !..!!:! |||.!.! heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 335 : sLeuSerGluGlnCysThrLysValGlyGluAlaValTyrMetThrGluTrpTyrHis : 353 !|||..!..!!:! ! !:!!:!!!.!:!!|||!.!||| :!! ||||||!.! rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 354 : LeuProGlyLysAspIleLeuAspLeuValLeuIleIleSerArgSerSerValValT : 373 ! !! !||| ! ! ! !||||||:!!||||||||| !|||.!!!:! ! ! CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 374 : hrLysIleThrAlaGlyLysIleValHisMetSerLeuTyrThrPheThrThrValMe : 392 !:::|||||||||||||||.!!|||! |||!:!|||!:!||||||! ! !:!!:! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 393 : tLysThrAlaPheAlaTyrIleAsnValLeuArg : 403 !|||.!!:!! !:!!|||:!:::!|||:!!!:! uLysAlaSerGlySerTyrLeuSerValMetLys 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: gi|383850716|ref|XP_003700922.1| 295 403 . KQ414940.1 807257 807581 + 149 M 108 324 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807581 149 + . gene_id 1 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807581 149 + . alignment_id 1 ; Query gi|383850716|ref|XP_003700922.1| ; Align 807258 296 324 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 296 -> 406 Target range: 807257 -> 807587 297 : GlyTyrTyrLeuLeuThrGluTrpGluGlnSerGluAlaIleGlyThrLeuThrTyrC : 316 |||!:! !!!!|||..!! !... !!.!!!: !:!!!.!.!!|||! ! !! GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 317 : ysLeuPhePheIleSerLeuThrPheAsnIlePheIleLeuCysTyrIleGlyGluIl : 335 !:!!.!..!.:!:!!!||| !.!!.!.:!:!:!:!!! !..!||| |||.!.! heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 336 : eLeuSerGluGlnCysGlnAsnValGlyLeuSerAlaCysMetIleAspTrpTyrArg : 354 !|||..!..!!:! !:!!.!.:!!!.!! !:!!|||! ! ! !||||||||| rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 355 : PheArgGlnLysLysAlaLeuGlyLeuIleLeuIleValAlaIleSerAsnSerSerT : 374 ! !!.! ! ! !||| !! !|||:!!||||||:!! ! !.!!|||||| !! CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 375 : hrLysLeuThrAlaGlyLysLeuValGluLeuSerLeuSerAsnPheCysSerValPh : 393 !::::!!||||||||||||!!!||| !:!!!:!|||! !!.!||| ..!:!!.! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 394 : eLysSerSerLeuAlaTyrLeuSerLeuLeuArgThrLeu : 406 .|||:!!||| !:!!|||||||||:!!:!!!:!..!:!! uLysAlaSerGlySerTyrLeuSerValMetLysValMet 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: gi|383850736|ref|XP_003700932.1| 296 406 . KQ414940.1 807257 807587 + 140 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807587 140 + . gene_id 1 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807587 140 + . alignment_id 1 ; Query gi|383850736|ref|XP_003700932.1| ; Align 807258 297 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 293 -> 401 Target range: 807257 -> 807581 294 : GlyTyrTyrValLeuMetHisTrpAlaAsnArgAspTyrGlnAsnMetThrIleCysV : 313 |||!:! ! !!|||:!: ! !::!!..!:!||| !! !! !! GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 314 : alValIleLeuCysSerMetAlaPheAsnIlePheIleValCysTyrIleGlyGluLy : 332 !!|||:!::!! !!!:!! !.!!.!.:!:!:!:!! !..!||| |||.!.! heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 333 : sLeuSerGluGlnCysLysAsnValGlyAspSerValTyrMetThrAsnTrpTyrTyr : 351 !|||..!..!!:! !:!!.!.:!!!.!.!.:!!!.!||| :!! !|||||| ! rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 352 : LeuProAspLysHisIleLeuAspLeuLeuLeuIleIleSerArgSerSerThrValI : 371 ! !! !! ! ! !|||||||||||||||||| !|||.!!!:!:!! ! CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 372 : leLysMetThrAlaGlyLysPheValThrMetSerIleTyrThrPheAlaSerValVa : 390 !:::!!:|||||||||||||||||| !!|||!:!:!!!:!|||||| !..!:!!:! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 391 : lLysThrAlaPheAlaTyrLeuAsnValLeuArg : 401 !|||.!!:!! !:!!||||||::!|||:!!!:! uLysAlaSerGlySerTyrLeuSerValMetLys 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: gi|383850718|ref|XP_003700923.1| 293 401 . KQ414940.1 807257 807581 + 157 M 108 324 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807581 157 + . gene_id 1 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807581 157 + . alignment_id 1 ; Query gi|383850718|ref|XP_003700923.1| ; Align 807258 294 324 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 249 Query range: 269 -> 397 Target range: 5515 -> 4204 270 : PheIleSerArgValGluAspLeuLeuAsnGluIleCysLeuValGluValValGlyCysTh : 290 ||||||||||||:!!|||! :!!:!!|||:!! |||!!!:!!|||:!!:!! !!||||| PheIleSerArgLeuGluAlaMetMetAsnLysAlaCysPheLeuGluLeuMetArgCysTh 5515 : TTCATATCGCGCTTAGAGGCAATGATGAACAAAGCGTGTTTCCTGGAGTTAATGAGGTGCAC : 5455 291 : rMetAsnIleCysPheLeuGlyTyrTyrLeuLeuThr >>>> Target Intron 1 >> : 303 |||| !|||||| :!!|||||||||:!!!!!! ! 835 bp rMetAlaIleCysAlaIleGlyTyrTyrIlePheMet++ 5454 : GATGGCTATTTGCGCAATTGGATATTATATATTCATGgt....................... : 5414 304 : >> GluTrpGluGlnSerGluAlaIleGlyThrLeuThrTyrCysLeuPhePheIleSerL : 322 |||||| !:!!|||!!:||| ! ! !!!!|||||| !:!! .!!:!!:!!: ++GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaV 5413 : ..agGAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTG : 4524 323 : euThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuSerGluGln >>>> Ta : 340 !!..! ||| |||::::::|||||||||.!!!!:! |||!!!|||||| alValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4523 : TTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt....... : 4468 341 : rget Intron 2 >>>> CysGlnAsnValGlyLeuSerAlaCysMetIleAspTrpTyr : 353 92 bp ||| !!!.|||||| ! !!.!! !|||! !||||||||| ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyr 4467 : ..................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTAT : 4339 354 : ArgPheArgGlnLysLysAlaLeuGlyLeuIleLeuIleValAlaIleSerAsnSerSerTh : 374 !.!.! !|||!:!!:! !|||! !||||||||||||:!!.!! !|||||| ! !.. TyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValVa 4338 : TATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGT : 4276 375 : rLysLeuThrAlaGlyLysLeuValGluLeuSerLeuSerAsnPheCysSerValPheLysS : 395 !:!!:!!||||||||||||::: ...:::||||||! !!..||| !!..!||| !:!!! lGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluT 4275 : TGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAA : 4213 396 : erSerLeu : 397 !!!:!||| hrAsnLeu 4212 : CTAATCTT : 4205 vulgar: gi|383850736|ref|XP_003700932.1| 269 397 . LHQN01027980.1 5515 4204 - 249 M 33 99 5 0 2 I 0 831 3 0 2 M 37 111 5 0 2 I 0 88 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4205 5515 249 - . gene_id 1 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 5417 5515 . - . LHQN01027980.1 exonerate:protein2genome:local exon 5417 5515 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 5415 5416 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4582 5416 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4582 4583 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4471 4581 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4581 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 2 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 2 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 1 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4205 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4205 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4205 5515 249 - . alignment_id 1 ; Query gi|383850736|ref|XP_003700932.1| ; Align 5516 270 99 ; Align 4582 303 111 ; Align 4379 340 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 367 Query range: 9 -> 162 Target range: 462 -> 3 10 : AsnProIleGlyLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyV : 31 ||| !! !!.! !||||||||||||||||||! !||||||||| :!!||| !||||||. AsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyT 462 : AATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCA : 399 32 : alTrpProValLeuThrSerArgAsnGluLysIleValSerLeuThrLeuAsnValIleCysTy : 52 .!|||||| !!!!:!!|||!.! !|||!:!! !:!!|||! !! !||||||||||||||||| hrTrpProGlnPheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTy 398 : CATGGCCACAGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTA : 336 53 : rCysSerIleLeuValThrValValProCysLeuLeuArgIlePheLeuGluAspAspAspLeu : 73 | !:!!|||||| !!:!!:!!:!!||||||! !|||!.!:!!.!.|||||| ! ! !!!! rThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPhe 335 : CACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTC : 273 74 : LeuAlaLysLeuLysMetThrGlyAlaMetSerHisCysPheAlaGlyGlyLeuAsnTyrThrT : 95 ! !.!!|||:!!|||!!: !||| !!:!!||||||!! ! ! !! !:!!!:!||||||! TyrThrLysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrM 272 : TACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCA : 207 96 : hrLeuLeuLeuArgArgLysGluIleHisTyrCysIleLysGlnIleAsnSerAspTrpArgTh : 116 !|||||||||||||||||| ||||||:!!! !:!!!!.!!.!!:.!.!!!||||||||||| etLeuLeuLeuArgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgTh 206 : TGCTGTTGCTGCGACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAAC : 144 117 : rValLysArgProAspAlaGlnGlnValMetLeuLysAspAlaLysPheGlyArgSerValAla : 137 |..! ||| ::: ::::::|||||||||||| !!|||||||||.!!|||! !!.!||| rThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAla 143 : GACGacgagaaaggagaagaaagaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCG : 81 138 : AlaPheCysAlaIlePheMetGlnGlyGlyValPheCysPheSerValAlaThrValPheThrM : 159 !|||||||||||||||!!:!!.||||||:!!.!! ! !:!!!!||| !|||!.!! !|||! IlePheCysAlaIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaSerThrT 80 : ATTTTTTGTGCGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTCCACCA : 15 160 : etGluIleVal : 162 ! !:!!||| hrMetValVal 14 : CGATGGTTGTC : 4 vulgar: gi|383850520|ref|XP_003700843.1| 9 162 . LHQN01027980.1 462 3 - 367 M 153 459 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4 462 367 - . gene_id 1 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4 462 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4 462 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4 462 367 - . alignment_id 1 ; Query gi|383850520|ref|XP_003700843.1| ; Align 463 10 459 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 210 Query range: 333 -> 390 Target range: 4381 -> 4210 334 : GlnCysAsnArgValAlaAspValValTyrMetThrAsnTrpTyrCysMetProTyrArgSe : 354 |||||| !:!|||!.!!!:|||||||||||||||:!!||||||! !:!!||| ! |||!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 355 : rIleLeuAspLeuIleLeuIleIleSerArgSerAsnValValThrLysIleThrAlaGlyL : 375 !||||||||||||||||||||||||!!!|||||||||||||||..!:!!||||||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 376 : ysValIleTyrMetSerIleTyrThrPheGlyAspValLeuLysThr : 390 ||:::...:::||||||:!!|||||||||||||||||| !:!!||| ysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThr 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 4211 vulgar: gi|383850520|ref|XP_003700843.1| 333 390 . LHQN01027980.1 4381 4210 - 210 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4211 4381 210 - . gene_id 2 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4211 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4211 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4211 4381 210 - . alignment_id 2 ; Query gi|383850520|ref|XP_003700843.1| ; Align 4382 334 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 134 Query range: 292 -> 387 Target range: 2555 -> 1822 293 : TyrTyrIleIleMetGluTrpGluGluHisAspValGlnAsnLeuThrSerTyrAlaMetIl : 313 ||| |||::: ! :!!||| ! ... !:!!!..:!!..!||||||!.!!!:|| TyrLysCysIleLeuThrSerGlnGluLysSerArgLysThrValValSerTyrGlyIleIl 2555 : tacaaatgtattttaacTTCTCAGGAAAAGTCGAGGAAAACGGTAGTTTCATACGGCATCAT : 2495 314 : eLeuValSerValThrPheAsnValPheIleMetCysTyrIleGlyGluValLeuMetGlu{ : 334 |! !||||||:!!|||||||||..!||| ::: ||||||:!!..!{ eTyrValSerMetThrPheAsnThrPheProThrGlySerLeuLeuIleValLeuLeuSer{ 2494 : ATACGTGTCCATGACTTTTAACACTTttccgaccggtagcctattaatcgttCTATTGTCG{ : 2432 335 : G} >>>> Target Intron 1 >>>> {ln}CysAsnArgValAlaAspValValTyr : 343 |} 442 bp {||} !!.!!:!|||!.!! !|||||| G}-- ++{ln}ThrThrLysValGlyGlyLysValTyr 2431 : C}cg.........................ag{AG}ACTACCAAAGTCGGAGGAAAAGTGTAC : 1963 344 : MetThrAsnTrpTyrCysMetProTyrArgSerIleLeuAspLeuIleLeuIleIleSerAr : 364 ||||||.!.|||||| ! :!! !! ! !:!!!! !|||! !!!!:!!:!!||||||||||| MetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGlyPheValMetIleIleSerAr 1962 : ATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGGTTTTGTAATGATCATCTCCAG : 1900 365 : gSerAsnValValThrLysIleThrAlaGlyLysValIleTyr<-><->MetSerIleTyrT : 383 ||||!:!:!!|||! !|||||||||||||||||| !!:!!||| !|||:!! | gSerSerMetValIleLysIleThrAlaGlyLysPheValTyr***ThrSerSerValAlaT 1899 : ATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTATACTGAACATCGTCTGTCGCAA : 1837 384 : hrPheGlyAspVal : 387 |||||||||||||| hrPheGlyAspVal 1836 : CATTTGGCGATGTG : 1823 vulgar: gi|383850520|ref|XP_003700843.1| 292 387 . LHQN01027980.1 2555 1822 - 134 M 41 123 S 0 1 5 0 2 I 0 438 3 0 2 S 1 2 M 44 132 G 0 6 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1823 2555 134 - . gene_id 3 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 2432 2555 . - . LHQN01027980.1 exonerate:protein2genome:local exon 2432 2555 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 2430 2431 . - . intron_id 1 ; splice_site "CG" LHQN01027980.1 exonerate:protein2genome:local intron 1990 2431 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 1990 1991 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 1823 1989 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1823 1989 . - . insertions 6 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1823 2555 134 - . alignment_id 3 ; Query gi|383850520|ref|XP_003700843.1| ; Align 2556 293 123 ; Align 1988 335 132 ; Align 1850 379 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 366 Query range: 4 -> 163 Target range: 474 -> 3 5 : IleIleArgThrAspLeuAspSerLeuPheAspTyrSerLeuGlnLeuAsnLysTrpLeuLeuI : 26 :!!! !..!! !:!!:!! !:!! ! !|||||||||||||||! !|||::!||| !:!!! ValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetL 474 : GTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGA : 411 27 : leProIleGlyAlaTrpProSerThrThrSerLysIleGluArgValValSerLeuIleLeuIl : 47 ! !||||||.!!||||||..! !:!!|||!!.:!!|||||| !:!!|||! !||||||! ysSerIleGlyThrTrpProGlnPheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAs 410 : AAAGCATAGGCACATGGCCACAGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAA : 348 48 : eValValSerTyrCysSerIleLeuThrThrValValProCysIleLeuTyrValIleLeuAsp : 68 !|||:!!!!!||| !:!!|||||| !:!!:!!:!!|||||| |||:!!:!!!!:|||!!: nValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGlu 347 : CGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAA : 285 69 : AspAspLeuLeuThrGlnLysLeuMetMetValGlyProLeuSerHisTrpPheIleGlyGlyI : 90 ! ! !!!! ! !|||:!!! !!::!!|||||||||||||||||| ! .!! !! !| LysGlyThrPheTyrThrLysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleI 284 : AAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCA : 219 91 : leAsnTyrThrThrLeuLeuLeuArgLysLysGluIleGlnCysCysValLysHisIleHisMe : 111 ||!:!||||||! !||||||||||||:::||| |||!!. !! !|||!!. ||||| leSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPheValAsn------HisMe 218 : TCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTTTGTCAAT------CATAT : 162 112 : tGlnThrAspTrpArgSerValThrLysSerLysAspGlnGluIleMetLeuLysAspAlaGlu : 132 |:!!||||||||||||!!!..!|||:::...::: :::|||:::||||||||| !!|||:!! tGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLys 161 : GGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGCTGAAGTACGCAAAA : 99 133 : PheGlyArgTyrValValIlePheCysThrAlaPheMetGlnGlyGlyValLeuCysTyrCysV : 154 |||.!!||||||!.!!.!|||||||||.!! !|||!!:!!.||||||:!!||| ! ||||||| PheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleLeuGlyTyrCysV 98 : TTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTATACTTGGATATTGTG : 33 155 : alIleThrGlyPheThrThrGluValIle : 163 ||!!:|||!.!! !|||||| !|||:!! alMetThrAlaSerThrThrMetValVal 32 : TTATGACAGCGTCCACCACGATGGTTGTC : 4 vulgar: gi|383850718|ref|XP_003700923.1| 4 163 . LHQN01027980.1 474 3 - 366 M 103 309 G 2 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4 474 366 - . gene_id 1 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4 474 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4 474 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 4 474 366 - . alignment_id 1 ; Query gi|383850718|ref|XP_003700923.1| ; Align 475 5 309 ; Align 166 110 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 274 Query range: 299 -> 402 Target range: 4581 -> 4091 300 : HisTrpAlaAsnArgAspTyrGlnAsnMetThrIleCysValValIleLeuCysSerMetAl : 320 .!.|||.!!.!.!!!||| !|||! :!: !! ! !:!!|||! !||| !:!!:!:!. GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValVa 4581 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTGT : 4521 321 : aPheAsnIlePheIleValCysTyrIleGlyGluLysLeuSerGluGln >>>> Target : 337 ! ||| |||::::::|||||||||.!!!!:!:!|||!!!|||||| 9 lSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4520 : TtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt........... : 4468 338 : Intron 1 >>>> CysLysAsnValGlyAspSerValTyrMetThrAsnTrpTyrTyrL : 352 2 bp ||| !!!.||||||!!: !||||||||||||:!!|||||||||| ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrL 4467 : ..............agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATC : 4333 353 : euProAspLysHisIleLeuAspLeuLeuLeuIleIleSerArgSerSerThrValIleLys : 372 |||||.!.!:!...||||||||||||:!!|||||||||!!!||||||!:!..!|||:!!:!! euProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGlu 4332 : TGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAA : 4273 373 : MetThrAlaGlyLysPheValThrMetSerIleTyrThrPheAlaSer >>>> Target : 389 !!:||||||||||||... ||||||:!!|||||||||!.!..! 89 IleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4272 : ATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt............ : 4220 390 : Intron 2 >>>> ValValLysThrAlaPheAlaTyrLeuAsnValLeuArgGln : 402 bp ||||||||||||!.!|||||||||||||||:!!||| !!||| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGln 4219 : .............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAA : 4092 vulgar: gi|383850718|ref|XP_003700923.1| 299 402 . LHQN01027980.1 4581 4091 - 274 M 37 111 5 0 2 I 0 88 3 0 2 M 52 156 5 0 2 I 0 85 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4092 4581 274 - . gene_id 2 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4581 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4581 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4223 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 2 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 2 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 1 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4092 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4092 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4092 4581 274 - . alignment_id 2 ; Query gi|383850718|ref|XP_003700923.1| ; Align 4582 300 111 ; Align 4379 337 156 ; Align 4134 389 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 335 -> 379 Target range: 1990 -> 1858 336 : GlnCysLysAsnValGlyAspSerValTyrMetThrAsnTrpTyrTyrLeuProAspLysHi : 356 :!! !! !!.||||||! !.!||||||||||||.!.|||||| ||| !!.!.||| GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysTh 1990 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAAC : 1930 357 : sIleLeuAspLeuLeuLeuIleIleSerArgSerSerThrValIleLysMetThrAlaGlyL : 377 ! !|||! !!!!:!!:!!||||||||||||||||||! !|||||||||!!:|||||||||| rAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyL 1929 : TGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAA : 1867 378 : ysPheVal : 379 |||||||| ysPheVal 1866 : AATTCGTA : 1859 vulgar: gi|383850718|ref|XP_003700923.1| 335 379 . LHQN01027980.1 1990 1858 - 125 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1859 1990 125 - . gene_id 3 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1859 1990 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1859 1990 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1859 1990 125 - . alignment_id 3 ; Query gi|383850718|ref|XP_003700923.1| ; Align 1991 336 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 333 Query range: 6 -> 165 Target range: 474 -> 3 7 : ValValProThrAspLeuAspSerLeuSerAspTyrSerLeuGlnLeuAsnLysTrpLeuLeuI : 28 |||..! !! !:!!:!! !:!! !||||||||||||||||||! !|||::!||| !:!!! ValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetL 474 : GTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGA : 411 29 : leThrIleGlyAlaTrpProSerThrProSerThrThrLysIleGluLysIleValSerPheIl : 49 !!:!||||||.!!||||||..! ! !!||| !!.:!!|||!:!! !:!!||| || ysSerIleGlyThrTrpProGlnPheSerSer------AsnLeuGluArgAsnIleSerArgIl 410 : AAAGCATAGGCACATGGCCACAGTTCTCGTCG------AACCTCGAGAGAAACATCTCTCGAAT : 354 50 : eLeuIleValIleCysTyrCysThrIleLeuThrThrValLeuProSerIleLeuTyrValIle : 70 ||||! !|||||||||||| !.!!|||||| !:!!:!!:!!|||!!! |||:!!:!!!!: eLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMet 353 : ATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATG : 291 71 : LeuAlaAspGluAspLeuGlnGlnLysLeuMetValMetGlyProLeuSerHisTrpPheIleG : 92 |||! ! ! ! ! !!!! ! !|||:!!! :!!:!:|||||||||||||||||| ! .!! LeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyProLeuSerHisTrpValPheC 290 : CTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCT : 225 93 : lyGlyIleAsnTyrThrThrLeuLeuLeuArgGlyLysGluIleGlnCysCysIleLysArgVa : 113 !! !|||!:!||||||! !|||||||||||| !!||| |||!!. !! !:!!!!.!.!:! ysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPheValAsnHisMe 224 : GTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTTTGTCAATCATAT : 162 114 : lGlnThrAspTrpArgThrValThrArgLeuAsnAspGlnLysIleMetMetArgAsnAlaGlu : 134 !:!!|||||||||||||||..!|||||| ... :::::::::|||:!!!:! !!|||:!! tGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLys 161 : GGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGCTGAAGTACGCAAAA : 99 135 : IleGlyArgTyrValValValCysCysThrAlaPheMetGlnGlyGlyValLeuCysTyrCysV : 156 .!!.!!||||||!.!!.!:!!! !|||.!! !|||!!:!!.||||||:!!||| ! ||||||| PheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleLeuGlyTyrCysV 98 : TTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTATACTTGGATATTGTG : 33 157 : alIleThrGlyPheThrThrGluValVal : 165 ||!!:|||!.!! !|||||| !|||||| alMetThrAlaSerThrThrMetValVal 32 : TTATGACAGCGTCCACCACGATGGTTGTC : 4 vulgar: gi|383850716|ref|XP_003700922.1| 6 165 . LHQN01027980.1 474 3 - 333 M 32 96 G 2 0 M 125 375 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4 474 333 - . gene_id 1 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4 474 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4 474 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 4 474 333 - . alignment_id 1 ; Query gi|383850716|ref|XP_003700922.1| ; Align 475 7 96 ; Align 379 41 375 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 244 Query range: 337 -> 404 Target range: 4381 -> 4091 338 : GlnCysThrLysValGlyGluAlaValTyrMetThrGluTrpTyrHisLeuProGlyLysAs : 358 |||||| !||||||||||||!.!||||||||||||!!:||||||:!!|||||| !!:! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 359 : pIleLeuAspLeuValLeuIleIleSerArgSerSerValValThrLysIleThrAlaGlyL : 379 ||||||||||||:!!|||||||||!!!||||||!:!||||||..!:!!||||||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 380 : ysIleValHisMetSerLeuTyrThrPheThrThr >>>> Target Intron 1 >>>> : 391 ||||| ||||||||||||||||||||| ! ! 89 bp ysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATgt......................... : 4220 392 : ValMetLysThrAlaPheAlaTyrIleAsnValLeuArgGln : 404 |||:!:||||||!.!|||||||||:!:|||:!!||| !!||| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGln 4219 : agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAA : 4092 vulgar: gi|383850716|ref|XP_003700922.1| 337 404 . LHQN01027980.1 4381 4091 - 244 M 53 159 5 0 2 I 0 85 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4092 4381 244 - . gene_id 2 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4223 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4092 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4092 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4092 4381 244 - . alignment_id 2 ; Query gi|383850716|ref|XP_003700922.1| ; Align 4382 338 159 ; Align 4134 391 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 337 -> 382 Target range: 1990 -> 1855 338 : GlnCysThrLysValGlyGluAlaValTyrMetThrGluTrpTyrHisLeuProGlyLysAs : 358 :!! !||||||||||||! ! !|||||||||||||||||||||!..||| !! !||| GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysTh 1990 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAAC : 1930 359 : pIleLeuAspLeuValLeuIleIleSerArgSerSerValValThrLysIleThrAlaGlyL : 379 ! !|||! !!!!|||:!!||||||||||||||||||:!!|||! !|||||||||||||||| rAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyL 1929 : TGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAA : 1867 380 : ysIleValHis : 382 ||.!!|||:!! ysPheValTyr 1866 : AATTCGTATAC : 1856 vulgar: gi|383850716|ref|XP_003700922.1| 337 382 . LHQN01027980.1 1990 1855 - 139 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1856 1990 139 - . gene_id 3 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1856 1990 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1856 1990 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1856 1990 139 - . alignment_id 3 ; Query gi|383850716|ref|XP_003700922.1| ; Align 1991 338 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 241 Query range: 14 -> 158 Target range: 444 -> 15 15 : AsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProIleGlyIleTrpProHisSerAspM : 36 :!!! !|||:!!||||||||||||||| !:!!||| !||||||! !||||||!!.! !... AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSer- 444 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCG- : 381 37 : etSerArgThrLysLysLeuTyrAspTrpPheThrTyrValValCysTyrGlyLeuIleSerPh : 57 |||!.! !:!!!:! ! !..! ! .!. ! !!|||:!!|||||| ! !||| !|| --SerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPh 380 : --TCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATT : 321 58 : eLeuPheValProCysSerMetTyrValPheLeuGluValGluAspLeuTyrAsnLysIleLys : 78 |! !.!.:!!|||||||||:!!:!!:!!.!.|||||| !! ! !!!!|||!..|||:!:||| eSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLys 320 : CTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAA : 258 79 : LeuPheGlyProLeuIlePhePheLeuMetAlaPheAlaLysTyrTyrLeuLeuIleTyrHisG : 100 :!!.!!|||||||||! ! !!:::!!.!...!.!! !!..||| !:!!|||:!: !.. IleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgA 257 : ATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGAC : 192 101 : lyAsnAspIleArgGluCysIleGluArgIleLysTrpAspTrpLysAsnIleThrTyrHisAs : 121 !!!!. !|||!.!.!.! !:!!.!.!.!!!::!! ||||||!:!!..! ||| :: rgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGl 191 : GTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaagga : 129 122 : pAspLysAsnIleMetLeuGluAsnAlaAsnPheGlyArgArgLeuValThrValCysThrPhe : 142 : |||...:::||||||:!! !!|||!!.|||.!!||| ! !!.!! ! !!|||.!!.!! uLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIle 128 : gaagaaagaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATC : 66 143 : PheMetTyrSerGlyPheAlaSerTyrTyrIleIleIleProIleThr : 158 |||!!::!!.!!|||.!. !.!!|||! !:!!!!:! ! !! !||| PheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaSerThr 65 : TTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTCCACC : 16 vulgar: gi|383850508|ref|XP_003700837.1| 14 158 . LHQN01027980.1 444 15 - 241 M 21 63 G 1 0 M 122 366 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 16 444 241 - . gene_id 1 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 16 444 . - . LHQN01027980.1 exonerate:protein2genome:local exon 16 444 . - . insertions 0 ; deletions 1 LHQN01027980.1 exonerate:protein2genome:local similarity 16 444 241 - . alignment_id 1 ; Query gi|383850508|ref|XP_003700837.1| ; Align 445 15 63 ; Align 382 37 366 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 173 Query range: 333 -> 402 Target range: 4381 -> 4085 334 : GlnCysLysLysIleGlyGluMetThrTyrMetThrGluTrpTyrArgLeuProGlyAsnLy : 354 |||||| !|||:!!||||||:!!..!|||||||||!!:|||||| !|||||| !!..!: GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 355 : sLysLeuTyrCysIleMetIleIleAlaMetSerAsnSerSerMetLysLeuThrAlaGlyS : 375 !! ||| !!! |||:!!||||||.!! |||||| ! !:!::!!:!!|||||||||. gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 376 : erMetValGluLeuSerIleGluThrPheThrAsn >>>> Target Intron 1 >>>> : 387 ..::: ...:::|||:!! ! |||||| !:!! 89 bp ysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATgt......................... : 4220 388 : ValValLysThrAlaPheAlaPheLeuAsnValLeuArgThrMetThr : 402 ||||||||||||!.!||||||!:!||||||:!!||| !! !|||:!! ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMetSer 4219 : agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAAATGTCC : 4086 vulgar: gi|383850508|ref|XP_003700837.1| 333 402 . LHQN01027980.1 4381 4085 - 173 M 53 159 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4086 4381 173 - . gene_id 2 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4223 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4086 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4086 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4086 4381 173 - . alignment_id 2 ; Query gi|383850508|ref|XP_003700837.1| ; Align 4382 334 159 ; Align 4134 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 159 Query range: 296 -> 391 Target range: 4581 -> 4204 297 : AspTrpLysGlnSerAsnThrIleGlyLeuThrThrTyrThrLeuLeuLeuIleSerLeuTh : 317 !!:|||! !:!!|||:!!.!! ! !||| !||||||! !:!! !|||:!!:!!:!!.. GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValVa 4581 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTGT : 4521 318 : rPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuIleGluLys >>>> Target : 334 ! ||| |||::::::|||||||||.!!||| !|||! !|||:!! 9 lSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4520 : TtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt........... : 4468 335 : Intron 1 >>>> SerThrSerIleGlyThrSerSerPheGluIleAspTrpTyrArgL : 349 2 bp !!! !!.!:!!||| ! ! !!:! !! !||||||||| !| ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrL 4467 : ..............agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATC : 4333 350 : euProThrLysThrIleArgGlyLeuIleLeuIleIleAlaMetSerAsnAsnProValLys : 369 ||||| !!:!! !|||! !! !|||||||||||||||.!! |||||| !|||:!! euProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGlu 4332 : TGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAA : 4273 370 : IleSerAlaGlyGlyIleValThrLeuSerLeuSerThrPheValAsnValLeuLysSerSe : 390 |||!!!|||||| ||| :::||||||! !||||||! !:!!||| !:!!!!!!: IleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAs 4272 : ATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAA : 4210 391 : rLeu : 391 !||| nLeu 4209 : TCTT : 4205 vulgar: gi|383850742|ref|XP_003700935.1| 296 391 . LHQN01027980.1 4581 4204 - 159 M 37 111 5 0 2 I 0 88 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4205 4581 159 - . gene_id 1 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4581 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4581 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4205 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4205 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4205 4581 159 - . alignment_id 1 ; Query gi|383850742|ref|XP_003700935.1| ; Align 4582 297 111 ; Align 4379 334 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850740|ref|XP_003700934.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 339 -> 396 Target range: 4372 -> 4201 340 : ArgValAlaThrAlaSerTyrGluThrLeuTrpTyrAsnLeuProAlaLysLysAlaArgAs : 360 !:!|||!.! !!.! !||| !||| !|||||| !!|||||| !!:!!:! !! !|| LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAs 4372 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGA : 4312 361 : pMetValLeuLeuLeuAlaIleSerLysThrProProLysLeuThrAlaGlyLysIlePheA : 381 |:!::!!|||:!!:!!.!! !|||!!...! ! !:!!:!!|||||||||||||||||| pLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLysIlePheH 4311 : TTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaaaatattcc : 4249 382 : spLeuSerLeuTyrThrPheGlyValValLeuLysSerSerMetVal : 396 :::||||||||||||||||||! !||| !:!!!!!!:!:!:||| isMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeuVal 4248 : atatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTTGTT : 4202 vulgar: gi|383850740|ref|XP_003700934.1| 339 396 . LHQN01027980.1 4372 4201 - 126 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4202 4372 126 - . gene_id 1 ; sequence gi|383850740|ref|XP_003700934.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4202 4372 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4202 4372 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4202 4372 126 - . alignment_id 1 ; Query gi|383850740|ref|XP_003700934.1| ; Align 4373 340 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 226 Query range: 22 -> 161 Target range: 438 -> 27 23 : SerIleGlnLeuCysHisTrpIleLeuLysProLeuGlyValTrpProArgSerThrAsnLeuT : 44 |||:!!|||! ! !!..||| :!!||| !:!!|||..!||||||!:!! !:!!::: ! SerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerAsnL 438 : AGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGAACC : 375 45 : hrValAlaGlnIleTrpLeuTyrGlnLeuIleAsnValLeuCysTyrAlaPheIleSerPheLe : 65 !! ! !.!.||| ! !!:!:!!:!!||||||:!!||||||.!! ||| !|||! euGluArgAsnIle------SerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSe 374 : TCGAGAGAAACATC------TCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTC : 318 66 : uLeuValProCysSerLeuTyrValIleLeuGluValGluAspValTyrAsnGlnIleLysPhe : 86 !:!!:!!||||||||||||:!!:!!!!:|||||| !! ! ! !!|||!..:!!:!:|||.!. rIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIle 317 : GATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATA : 255 87 : PheGlyProSerSerPheCysMetMetAlaIleMetLysTyrTyrLeuMetIleLeuHisGluA : 108 .!!||||||! !||| !!! :!!.!...!|||!!:!..||| !:!!:!!:!:|||!.....! LeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgL 254 : CTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTA : 189 109 : snAspIleArgAspCysIleGlnArgIleGluLeuAspTrpLysAsnIleSerHisAspAspAs : 129 !. !|||!.! !!! !:!!.!.!.!!!:||| !||||||!:!!..! :::... ::: ysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLy 188 : AAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaa : 126 130 : pLysLysIleMetValGluLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysThrPhePhe : 150 |||::::::|||:!!:!! ! |||||||||.!!||| ! ! !!!!|||.!!.!!||| sLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePhe 125 : gaaagaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTC : 63 151 : MetTyrSerGlyPheAlaPheTyrTyrIleVal : 161 !!::!!.!!|||.!. ! |||! !:!!:!! IleHisGlyGlyIleLeuGlyTyrCysValMet 62 : ATACACGGTGGTATACTTGGATATTGTGTTATG : 28 vulgar: gi|383850681|ref|XP_003700913.1| 22 161 . LHQN01027980.1 438 27 - 226 M 26 78 G 2 0 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 28 438 226 - . gene_id 1 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 28 438 . - . LHQN01027980.1 exonerate:protein2genome:local exon 28 438 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 28 438 226 - . alignment_id 1 ; Query gi|383850681|ref|XP_003700913.1| ; Align 439 23 78 ; Align 361 51 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 192 Query range: 8 -> 159 Target range: 480 -> 30 9 : ThrAlaLeuAspThrGlnAspTyrThrLysAsnValAsnLeuSerIleGlnPheSerArgTrpL : 30 |||!.!:!! ! :!! ||| !:! !:!!! !|||:!!|||!::!:!|||||| ThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpA 480 : ACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGG : 417 31 : euLeuArgProValGlyValTrpProLysSerGluValThrArgIleAspLysTyrPheThrTr : 51 !:!!!:! !:!!|||..!||||||:!!! !..! :!!!.!:!!!!:!:! !!.!!:!! ! laMetLysSerIleGlyThrTrpProGlnPheSer---SerAsnLeuGluArgAsnIleSerAr 416 : CGATGAAAAGCATAGGCACATGGCCACAGTTCTCG---TCGAACCTCGAGAGAAACATCTCTCG : 357 52 : pLeuValAsnSerLeuCysSerThrLeuLeuSerPheLeuPheValProCysLeuValPheLeu : 72 :!!:!!||| !:!!|||! !||| !:!! !|||! !.!.:!!||||||! !:!! !||| gIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeu 356 : AATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTA : 294 73 : IleLeuAspValSerAspSerTyrAsnArgIleLysLeuIleGlyProLeuSerPhePheLeuM : 94 !!:|||!!: !.!! !! !|||!..!:!:!:|||:!!:!!|||||||||||| !!:::!!. MetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyProLeuSerHisTrpValP 293 : ATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGT : 228 95 : etSerTyrMetLysTyrTyrLeuMetLeuLeuHisLysAsnAspIleLeuLysCysValGlnGl : 115 !.!!! !!!:!..||| !:!!:!!||||||!..:::!!. !|||! ! ! ! !|||.!.!! heCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPheValAsnHi 227 : TCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTTTGTCAATCA : 165 116 : nValGlnArgAspTrpAlaAsnAlaArgHisLeuAsnAspArgAsnIleMetGlyIleAsnAla : 136 .:!!:!!! !|||||| !!...!! ... ... :::...:::||| !! !!||| sMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAla 164 : TATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGCTGAAGTACGCA : 102 137 : AsnTyrGlyArgLysLeuValValValSerAlaPhePheMetSerSerSerTyrIlePhePheT : 158 !!.!:!.!!||| ! !!.!:!! !!!!!|||.!!|||!!: !.!!.!! :!! !:!! LysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleLeuGlyTyrC 101 : AAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTATACTTGGATATT : 36 159 : yrIle : 159 !:!! ysVal 35 : GTGTT : 31 vulgar: gi|383850686|ref|XP_003700914.1| 8 159 . LHQN01027980.1 480 30 - 192 M 33 99 G 1 0 M 117 351 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 31 480 192 - . gene_id 1 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 31 480 . - . LHQN01027980.1 exonerate:protein2genome:local exon 31 480 . - . insertions 0 ; deletions 1 LHQN01027980.1 exonerate:protein2genome:local similarity 31 480 192 - . alignment_id 1 ; Query gi|383850686|ref|XP_003700914.1| ; Align 481 9 99 ; Align 382 43 351 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 269 -> 300 Target range: 255 -> 162 270 : PheIleSerArgValGluAspLeuLeuAsnGluIleCysLeuValGluValValGlyCysThrM : 291 ||||||||||||:!!|||! :!!:!!|||:!! |||!!!:!!|||:!!..! !!||||||! PheIleSerArgIleGluAlaMetIleAsnLysAlaCysPheLeuGluLeuThrArgCysThrI 255 : TTCATATCGCGCATAGAGGCAATGATAAACAAAGCGTGTTTCCTGGAGTTAACGAGGTGCACGA : 192 292 : etAsnIleCysPheLeuGlyTyrTyrLeu : 300 !: !|||||| ! ||||||||||||:!! leAlaIleCysValLeuGlyTyrTyrIle 191 : TAGCTATATGCGTACTTGGATATTATATA : 163 vulgar: gi|383850736|ref|XP_003700932.1| 269 300 . LHQN01028641.1 255 162 - 100 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 163 255 100 - . gene_id 1 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 163 255 . - . LHQN01028641.1 exonerate:protein2genome:local exon 163 255 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 163 255 100 - . alignment_id 1 ; Query gi|383850736|ref|XP_003700932.1| ; Align 256 270 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 391 Query range: 14 -> 297 Target range: 1073 -> 156 15 : AsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProIleGlyIleTrpProHisSerAs : 35 :!!! !|||:!!||||||||||||||| !:!!||| !|||||| !||||||!!.|||.. AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSe 1073 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTC : 1013 36 : pMetSerArgThrLysLysLeuTyrAspTrpPheThrTyrValValCysTyrGlyLeuIleS : 56 . |||!.! !:!!!:!:!! !..! ! .!. ! !!|||:!!|||||| ! !:!! r---SerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValL 1012 : G---TCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTAC : 953 57 : erPheLeuPheValProCysSerMetTyrValPheLeuGluValGluAspLeuTyrAsnLys : 76 !||| !.!.:!!|||||||||:!!:!!|||.!.|||||| !||| !!!!|||!..||| euPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLys 952 : TATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAA : 893 77 : IleLysLeuPheGlyProLeuIlePhePheLeuMetAlaPheAlaLysTyrTyrLeuLeuIl : 97 :!:|||:!!.!!|||||||||! ! !!:::!!.!...!.!! !!..||| !:!!|||:! ValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLe 892 : GTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTT : 830 98 : eTyrHisGlyAsnAspIleArgGluCysIleGluArgIleLysTrpAspTrpLysAsnIleT : 118 : !.. !!!!. !||||||.!.! !.!!.!.!.!!!::!! ||||||!:!!..! ! uLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrM 829 : GCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGA : 767 119 : hrTyrHisAspAspLysAsnIleMetLeuGluAsnAlaAsnPheGlyArgArgLeuValThr : 138 ::: |||...|||||||||:!! !!|||!!.|||.!!||| ! !!.!! ! etArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIle 766 : tgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATT : 707 139 : ValCysThrPhePheMetTyrSerGlyPheAlaSerTyrTyrIleIleIleProIleThrIl : 159 !||||||.!!|||!!::!!.!!|||.!. !.!!|||! !:!!!!:! ! !!.!!|||! SerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrTh 706 : TCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCAC : 644 160 : eGlyLysValLysSerGluAspGlyAsnLeuThrPheIleProLeuAlaPheProPheSerS : 180 ! ||| ! !! !:!!! !!.!:!!! !!!. ! !||| !!!!.|||.!.! !! rMetValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrL 643 : GATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACA : 581 181 : erLeuIleValAspThrArgTyrSerProThrAsnGluIleIlePheSerValGlnLeuIle : 200 .! !:!!:!! ..! ! !:! !!! !|||||||||:!!.!!! ! !|||!!!:!! ysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeu 580 : AAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTC : 521 201 : AlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysGlyLeuGlyAlaMetLeuAlaVa : 221 :!!||| !:!! !:!! !! !.!!! !::!!.! .!!||| !::! |||.!! SerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSe 520 : TCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATC : 458 222 : lHisAlaCysGlyGlnMetGlnValLeuMetAsnTrpLeuLys<->HisLeuAsnAspGlyA : 241 !||||||! !||||||:!! |||:!!||| ! !:!!:!! !:!!!:!|||!.!| rHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaA 457 : ACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGA : 395 242 : rgSerAspMetGlyGluSerValAspAspArgIleAlaCysIleValSerGlnHisValArg : 261 || !! ! !!!:..! ! !|||..!||| !! ||||||..!:!!|||:!!||| rgArgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHisLeuArg 394 : GACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGA : 335 262 : IleLeu{Ly} >>>> Target Intron 1 >>>> {s}TyrLeuThrHisThrGluAr : 271 :!:|||{!!} 68 bp {.}!:!:!!:!!!.!! !||| ValLeu{As}++ ++{n}PheIleSerArgIleGluAl 334 : GTGTTG{AA}gt.........................ag{C}TTCATATCGCGCATAGAGGC : 237 272 : gThrLeuGlnLeuIleSerPheAlaGluPheLeuGlyCysThrValAspIleCysLeuLeuG : 292 !! !:!!.!. ! !!!||| !|||!!. ! !!||||||:!!! !||||||:!!|||| aMetIleAsnLysAlaCysPheLeuGluLeuThrArgCysThrIleAlaIleCysValLeuG 236 : AATGATAAACAAAGCGTGTTTCCTGGAGTTAACGAGGTGCACGATAGCTATATGCGTACTTG : 174 293 : lyTyrTyrValIleMet : 297 ||||||||:!!.!!||| lyTyrTyrIlePheMet 173 : GATATTATATATTCATG : 157 vulgar: gi|383850508|ref|XP_003700837.1| 14 297 . LHQN01028641.1 1073 156 - 391 M 21 63 G 1 0 M 199 597 G 0 3 M 28 84 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 157 1073 391 - . gene_id 1 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1073 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1073 . - . insertions 3 ; deletions 1 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 157 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 157 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 157 1073 391 - . alignment_id 1 ; Query gi|383850508|ref|XP_003700837.1| ; Align 1074 15 63 ; Align 1011 37 597 ; Align 411 236 84 ; Align 256 265 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 696 Query range: 6 -> 301 Target range: 1103 -> 156 7 : ValValProThrAspLeuAspSerLeuSerAspTyrSerLeuGlnLeuAsnLysTrpLeuLe : 27 |||..! !! !:!!:!! !:!! !||||||||||||||||||! !|||::!||| !:! ValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMe 1103 : GTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGAT : 1043 28 : uIleThrIleGlyAlaTrpProSerThrProSerThrThrLysIleGluLysIleValSerP : 48 !! !!:!|||||||||||||||..! |||:!!:!!!!.:!!|||!:!|||:!!||| tLysSerIleGlyAlaTrpProGln------SerSerSerAsnLeuGluArgIleIleSerA 1042 : GAAAAGCATAGGCGCATGGCCACAG------TCCTCGTCGAATCTCGAGAGAATCATCTCTC : 986 49 : heIleLeuIleValIleCysTyrCysThrIleLeuThrThrValLeuProSerIleLeuTyr : 68 ||||||! !|||||||||||| !.!!:!!||| !|||:!!:!!|||!!! |||:!! rgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIleProCysSerLeuHis 985 : GAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATCCCTTGTTCGCTGCAC : 926 69 : ValIleLeuAlaAspGluAspLeuGlnGlnLysLeuMetValMetGlyProLeuSerHisTr : 89 |||!!:|||! ! ! ||| !!!! ! !|||:!!! :!!:!:||||||||||||||||| ValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGlyProLeuSerHisTr 925 : GTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTG : 863 90 : pPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgGlyLysGluIleGlnCysCysI : 110 | ! .!! !! !|||!:!||||||! !|||||||||||| !!||| |||!:: !! !. pValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPheP 862 : GGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTT : 800 111 : leLysArgValGlnThrAspTrpArgThrValThrArgLeuAsnAspGlnLysIleMetMet : 130 !!!!.!.!:!!:!!|||||||||||||||..!! ||| ... ::::::||||||:!! heAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLysLysGluIleMetLeu 799 : TCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaagaaagaaataatgcTG : 740 131 : ArgAsnAlaGluIleGlyArgTyrValValValCysCysThrAlaPheMetGlnGlyGlyVa : 151 !:! !!|||:!!.!!.!!||||||!.!!.!:!!! !|||||| !|||!!:!!.||||||:! LysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIl 739 : AAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTAT : 677 152 : lLeuCysTyrCysValIleThrGlyPheThrThrGluValValGlnValGlyAsnGluThrA : 172 !||| ! |||||||||!!:|||!.!||||||||| !|||||| !|||||||||||||||! eLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValValGlyAsnGluThrM 676 : ACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTGGAAACGAGACTA : 614 173 : rgThrValArgLeuLeuProCysAlaAlaTyrLysLysLeuIleProValAspThrSerPro : 192 !! !:!!|||:!!||||||! !! !|||||| !|||:!!||||||||||||!:! !! etIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThr 613 : TGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACT : 554 193 : ThrAsnGluIleIleLeuPheValGlnPheLeuAlaGlyPheValValAsnSerThrThrVa : 213 ! !|||||||||:!!|||!!. !|||||||||:!!||||||:!!!.!|||!!!!:!.!!:! MetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAsnThrSerAlaIl 553 : ATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAACACCAGTGCGAT : 491 214 : lGlyAlaPheSerLeuAlaIleValPheAlaAlaHisAlaTyrGlyGlnLeuAspValLeuS : 234 !.!!!.!.!.||||||.!!! !!.!.!..!!:!!||||||! !|||||||||! !|||:!!! eSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuGlyValValM 490 : CAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGGGCGTGGTTA : 428 235 : erThrTrpIleThrGluPheValAsnGlnSerArgGluHisAspLysAsnAlaPheLeuAsn : 254 ! !! !||| !!!:||||||!:!.!.:!!|||......! |||:!!! ! !!!!:!! etLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLysAspAspHisPheAsp 427 : TGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAGGACGATCATTTCGAC : 368 255 : SerIleGlyProAlaValGluLysHisLeuAsnValLeu{Th} >>>> Target Intro : 268 ..!||| ! !! !|||||||||||||||!..||||||{!.} 68 bp GluIleProThrIleValGluLysHisLeuArgValLeu{As}++ 367 : GAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG{AA}gt................. : 322 269 : n 1 >>>> {r}PheIleSerHisIleGluAspMetLeuThrGluMetCysPheLeuGluL : 285 {!}|||||||||!.!||||||! |||:!!!.!:!! !||||||||||||| ++{n}PheIleSerArgIleGluAlaMetIleAsnLysAlaCysPheLeuGluL 321 : ........ag{C}TTCATATCGCGCATAGAGGCAATGATAAACAAAGCGTGTTTCCTGGAGT : 207 286 : euPheGlnCysThrPheGlyIleCysLeuLeuGlyTyrTyrValLeuLeu : 301 || ::!||||||.!.!.!||||||:!!||||||||||||:!!!!!:!! euThrArgCysThrIleAlaIleCysValLeuGlyTyrTyrIlePheMet 206 : TAACGAGGTGCACGATAGCTATATGCGTACTTGGATATTATATATTCATG : 157 vulgar: gi|383850716|ref|XP_003700922.1| 6 301 . LHQN01028641.1 1103 156 - 696 M 29 87 G 2 0 M 230 690 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 157 1103 696 - . gene_id 1 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1103 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1103 . - . insertions 0 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 157 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 157 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 157 1103 696 - . alignment_id 1 ; Query gi|383850716|ref|XP_003700922.1| ; Align 1104 7 87 ; Align 1017 38 690 ; Align 256 269 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 719 Query range: 4 -> 299 Target range: 1103 -> 156 5 : IleIleArgThrAspLeuAspSerLeuPheAspTyrSerLeuGlnLeuAsnLysTrpLeuLe : 25 :!!! !..!! !:!!:!! !:!! ! !|||||||||||||||! !|||::!||| !:! ValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMe 1103 : GTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGAT : 1043 26 : uIleProIleGlyAlaTrpProSerThrThrSerLysIleGluArgValValSerLeuIleL : 46 !! ! !|||||||||||||||..!:!!:!!|||!!.:!!||||||:!!:!!|||! !|||| tLysSerIleGlyAlaTrpProGlnSerSerSerAsnLeuGluArgIleIleSerArgIleL 1042 : GAAAAGCATAGGCGCATGGCCACAGTCCTCGTCGAATCTCGAGAGAATCATCTCTCGAATAT : 980 47 : euIleValValSerTyrCysSerIleLeuThrThrValValProCysIleLeuTyrValIle : 66 ||! !|||:!!!!!||| !:!!:!!||| !|||:!!:!!|||||| |||:!!|||!!: euAsnValIleCysTyrThrAlaValLeuPheThrIleIleProCysSerLeuHisValMet 979 : TGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATCCCTTGTTCGCTGCACGTAATG : 920 67 : LeuAspAspAspLeuLeuThrGlnLysLeuMetMetValGlyProLeuSerHisTrpPheIl : 87 |||!!: ! !!: !!!! ! !|||:!!! !!::!!|||||||||||||||||| ! .! LeuGluLysGluThrPheTyrThrLysValLysIleLeuGlyProLeuSerHisTrpValPh 919 : CTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTT : 857 88 : eGlyGlyIleAsnTyrThrThrLeuLeuLeuArgLysLysGluIleGlnCysCysValLysH : 108 ! !! !|||!:!||||||! !||||||||||||:::||| |||!:: !! ! !!!!. eCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsn- 856 : CTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAAT- : 794 109 : isIleHisMetGlnThrAspTrpArgSerValThrLysSerLysAspGlnGluIleMetLeu : 128 ||||||:!!||||||||||||!!!..!! :::...::: :::|||||||||||| -----HisMetGluThrAspTrpArgThrThrMetArgLysGluLysLysGluIleMetLeu 793 : -----CATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaagaaagaaataatgcTG : 740 129 : LysAspAlaGluPheGlyArgTyrValValIlePheCysThrAlaPheMetGlnGlyGlyVa : 149 ||| !!|||:!!|||.!!||||||!.!!.!|||! !|||||| !|||!!:!!.||||||:! LysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIl 739 : AAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTAT : 677 150 : lLeuCysTyrCysValIleThrGlyPheThrThrGluValIleGlnValGlyAsnGluThrA : 170 !||| ! |||||||||!!:|||!.!||||||||| !|||:!! !|||||||||||||||! eLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValValGlyAsnGluThrM 676 : ACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTGGAAACGAGACTA : 614 171 : rgThrIleArgMetLeuProCysAlaAlaTyrLysLysLeuIleProValAspThrSerPro : 190 !! !:!:|||:!!||||||! !! !|||||| !|||:!!||||||||||||!:! !! etIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThr 613 : TGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACT : 554 191 : ThrAsnGluIleIleLeuPheValGlnPheLeuAlaGlyPheIleValAsnSerSerThrVa : 211 ! !|||||||||:!!|||!!. !|||||||||:!!|||||||||!.!|||!!!|||.!!:! MetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAsnThrSerAlaIl 553 : ATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAACACCAGTGCGAT : 491 212 : lGlyAlaPheSerLeuAlaIleValPheAlaAlaHisAlaTyrGlyGlnLeuAsnValLeuI : 232 !.!!!.!.!.||||||.!!! !!.!.!..!!:!!||||||! !|||||||||..!|||:!!! eSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuGlyValValM 490 : CAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGGGCGTGGTTA : 428 233 : leThrTrpIleArgGluLeuValAsnGluSerArgGlyArgAspArgAsnValTyrLeuLys : 252 !: !! !|||..!!!:!!!|||!:!!!::!!||| !!|||! !:!:!!! !:!!!!! ! etLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLysAspAspHisPheAsp 427 : TGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAGGACGATCATTTCGAC : 368 253 : GluIleGlyValValValAspAsnHisLeuArgAlaLeu{Se} >>>> Target Intro : 266 |||||| !..!:!!|||!!:!!.|||||||||!.!|||{!:} 68 bp GluIleProThrIleValGluLysHisLeuArgValLeu{As}++ 367 : GAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG{AA}gt................. : 322 267 : n 1 >>>> {r}PheIleSerTyrIleGluAspMetMetThrGluIleCysPheLeuGluL : 283 {!}||||||||| !||||||! |||!!:!.!:!! ||||||||||||| ++{n}PheIleSerArgIleGluAlaMetIleAsnLysAlaCysPheLeuGluL 321 : ........ag{C}TTCATATCGCGCATAGAGGCAATGATAAACAAAGCGTGTTTCCTGGAGT : 207 284 : euPheLysCysThrPheAsnIleCysMetLeuGlyTyrTyrValLeuMet : 299 || !:!||||||.!. !||||||:!:||||||||||||:!!!!!||| euThrArgCysThrIleAlaIleCysValLeuGlyTyrTyrIlePheMet 206 : TAACGAGGTGCACGATAGCTATATGCGTACTTGGATATTATATATTCATG : 157 vulgar: gi|383850718|ref|XP_003700923.1| 4 299 . LHQN01028641.1 1103 156 - 719 M 103 309 G 2 0 M 156 468 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 157 1103 719 - . gene_id 1 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1103 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1103 . - . insertions 0 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 157 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 157 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 157 1103 719 - . alignment_id 1 ; Query gi|383850718|ref|XP_003700923.1| ; Align 1104 5 309 ; Align 795 110 468 ; Align 256 267 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 329 Query range: 8 -> 303 Target range: 1109 -> 156 9 : ThrAlaLeuAspThrGlnAspTyrThrLysAsnValAsnLeuSerIleGlnPheSerArgTr : 29 |||!.!:!! ! :!! ||| !:! !:!!! !|||:!!|||!::!:!||||| ThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTr 1109 : ACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTGGAATCGATG : 1049 30 : pLeuLeuArgProValGlyValTrpProLysSerGluValThrArgIleAspLysTyrPheT : 50 | !:!!!:! !:!!|||!.!||||||:!!|||..! :!!!.!:!!!!:!:! !.!!: pAlaMetLysSerIleGlyAlaTrpProGlnSerSer---SerAsnLeuGluArgIleIleS 1048 : GGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCG---TCGAATCTCGAGAGAATCATCT : 989 51 : hrTrpLeuValAsnSerLeuCysSerThrLeuLeuSerPheLeuPheValProCysLeuVal : 70 !! ! :!!:!!||| !:!!|||! !||| !:!! !||| !.!.:!!||||||! !:!! erArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIleProCysSerLeu 988 : CTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATCCCTTGTTCGCTG : 929 71 : PheLeuIleLeuAspValSerAspSerTyrAsnArgIleLysLeuIleGlyProLeuSerPh : 91 !:!!!!:|||!!: !..! !! !|||!..!:!:!:|||:!!:!!|||||||||||| HisValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGlyProLeuSerHi 928 : CACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCA : 866 92 : ePheLeuMetSerTyrMetLysTyrTyrLeuMetLeuLeuHisLysAsnAspIleLeuLysC : 112 !!:::!!.!.!!! !!!:!..||| !:!!:!!||||||!..:::!!. !|||! ! ! ! sTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisP 865 : CTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACT : 803 113 : ysValGlnGlnValGlnArgAspTrpAlaAsnAlaArgHisLeuAsnAspArgAsnIleMet : 132 ! !!.!.!!.:!!:!!! !|||||| !!...!!! ... ... :::...|||||| hePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLysLysGluIleMet 802 : TTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaagaaagaaataatg : 743 133 : GlyIleAsnAlaAsnTyrGlyArgLysLeuValValValSerAlaPhePheMetSerSerSe : 153 !! !!|||!!.!:!.!!||| ! !!.!:!! !!!!.!!.!!|||!!: !.!!.! LeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGl 742 : cTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGG : 680 154 : rTyrIlePhePheTyrIleAlaMetProIleSerValGlyArgIleProAlaValAspGlyA : 174 ! :!! !:!! !:!! !! !!.!!!!!..! ! !:!! !!.!! !:!!! !! yIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValValGlyAsnGluT 679 : TATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTGGAAACGAGA : 617 175 : snPheThrPheIleValLeuProPheProSerSerThrArgIlePheAspTyrArgHisSer : 194 .!.!.! !!!. !|||||||||!!.|||! !! !! ! !!:!!.!! ! ! !:! hrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsn 616 : CTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAAT : 557 195 : ProPheAsnGluIlePhePheValValGlnCysLeuAlaGlyThrIleLeuHisMetIleTh : 215 !!.!.||||||||| !!.!!:!! !|||! !|||:!!||| !||| !:!!! ! !.! ThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAsnThrSerAl 556 : ACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAACACCAGTGC : 494 216 : rValGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGlyGlnMetGluIleL : 236 !:!!.!!!.! ||||||.!!::!.!!.!..!! !||||||! !||||||:!!! :!:: aIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuGlyValV 493 : GATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGGGCGTGG : 431 237 : euMetAsnTrpLeuGluHisLeuIleSer<->GlyArgValAspMetLysAspThrValAsp : 255 !!||| ! !:!!||| !!!!!:!:||| !.!||| ! !|||||| ! ! ! alMetLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLysAspAspHisPhe 430 : TTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAGGACGATCATTTC : 371 256 : GlyArgIleAlaSerIleValGluGlnHisValArgIleLeu{Ar} >>>> Target In : 270 ! !..!||| !!!!!|||||||||:!!|||:!!|||:!:|||{!.} 68 b AspGluIleProThrIleValGluLysHisLeuArgValLeu{As}++ 370 : GACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG{AA}gt.............. : 322 271 : tron 1 >>>> {g}PheLeuGluLeuMetGluLysLeuLeuGlnGlnIleSerCysValG : 286 p {!}|||:!!..!! !!!:||| !:!!:!!.!.:!! !!!! !:!!| ++{n}PheIleSerArgIleGluAlaMetIleAsnLysAlaCysPheLeuG 321 : ...........ag{C}TTCATATCGCGCATAGAGGCAATGATAAACAAAGCGTGTTTCCTGG : 210 287 : luCysLeuGlyCysMetMetAsnLeuCysLeuLeuGlyTyrTyrCysIleMet : 303 ||! ! !!|||! !!!: !:!!|||:!!|||||||||||| .!!||| luLeuThrArgCysThrIleAlaIleCysValLeuGlyTyrTyrIlePheMet 209 : AGTTAACGAGGTGCACGATAGCTATATGCGTACTTGGATATTATATATTCATG : 157 vulgar: gi|383850686|ref|XP_003700914.1| 8 303 . LHQN01028641.1 1109 156 - 329 M 33 99 G 1 0 M 203 609 G 0 3 M 24 72 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 157 1109 329 - . gene_id 1 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1109 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1109 . - . insertions 3 ; deletions 1 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 157 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 157 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 157 1109 329 - . alignment_id 1 ; Query gi|383850686|ref|XP_003700914.1| ; Align 1110 9 99 ; Align 1011 43 609 ; Align 399 246 72 ; Align 256 271 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 543 Query range: 9 -> 273 Target range: 1091 -> 296 10 : AsnProIleGlyLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGl : 30 ||| !! !!.! !||||||||||||||||||! !||||||||| :!!||| !||||| AsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGl 1091 : AATATAACTGCTAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGG : 1031 31 : yValTrpProValLeuThrSerArgAsnGluLysIleValSerLeuThrLeuAsnValIleC : 51 |!.!|||||| !! !:!!|||!.! !|||!:!|||:!!|||! !! !||||||||||||| yAlaTrpProGlnSerSerSerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleC 1030 : CGCATGGCCACAGTCCTCGTCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCT : 968 52 : ysTyrCysSerIleLeuValThrValValProCysLeuLeuArgIlePheLeuGluAspAsp : 71 ||||| !:!!:!!||| !!|||:!!:!!||||||! !|||!.!:!!.!.|||||| ! !!: ysTyrThrAlaValLeuPheThrIleIleProCysSerLeuHisValMetLeuGluLysGlu 967 : GCTACACCGCAGTACTATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAG : 908 72 : AspLeuLeuAlaLysLeuLysMetThrGlyAlaMetSerHisCysPheAlaGlyGlyLeuAs : 92 !!!!! !.!!|||:!!|||!!: !||| !!:!!||||||!! ! ! !! !:!!!: ThrPheTyrThrLysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSe 907 : ACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAG : 845 93 : nTyrThrThrLeuLeuLeuArgArgLysGluIleHisTyrCysIleLysGlnIleAsnSerA : 113 !||||||! !|||||||||||||||||| |||!.!:!!! !.!!!!.!!.!!:.!.!!!| rTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrA 844 : TTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCG : 782 114 : spTrpArgThrValLysArgProAspAlaGlnGlnValMetLeuLysAspAlaLysPheGly : 133 |||||||||||..!! ||| ::: :::::::::||||||||| !!|||||||||.!! spTrpArgThrThrMetArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSer 781 : ATTGGAGAACGACGAtgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGT : 722 134 : ArgSerValAlaAlaPheCysAlaIlePheMetGlnGlyGlyValPheCysPheSerValAl : 154 |||! !!.!||| !! !|||.!!||||||!!:!!.||||||:!!.!! ! !:!!!!||| ArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMe 721 : CGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTAT : 659 155 : aThrValPheThrMetGluIleValGlnValGlyAsnGluThrArgAlaValHisThrPheP : 175 !|||!.!||||||! ! !:!!||| !|||||||||||||||! ! !:!!!.!..!.!.| tThrAlaPheThrThrMetValValValValGlyAsnGluThrMetIleLeuArgValLeuP 658 : GACAGCGTTCACCACGATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGC : 596 176 : roCysProAlaTyrArgLysLeuIleProValAspAsnAsnPheLeuCysGluIlePheLeu : 195 ||! ||| !|||!:! !|||:!!|||||||||!..||| !:!! !|||||| !!||| roLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeu 595 : CGTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTT : 536 196 : AlaValGlnPheLeuCysValPheIleValAsnSerThrIleValGlyAlaPheSerLeuAl : 216 ! !|||||||||! !! !||||||!.!|||!!!!:! :!!.!!!.!.!.||||||.! LeuSerGlnPheLeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuTh 535 : TTGTCACAGTTTCTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTAC : 473 217 : aIleValPheAlaSerHisValTyrGlyGlnLeuAspIleLeuMetValTrpValThrGluT : 237 !! !!.!.!..!!||||||!.!! !|||||||||! !:!::!!|||:!!! !:!! !!!:! rSerAlaLeuThrSerHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspP 472 : AAGTGCTCTAACATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATT : 410 238 : yrValAsnLysSerGluGluMetHisLys<->AsnArgTrpAsnGlnIleGlyValPheVal : 256 :!|||!:! ! :!!..!...! ||| :!!!.!!:::!!:!!||| !..!.!!||| heValSerAspAlaArgArgArgGlyLysAspAspHisPheAspGluIleProThrIleVal 409 : TTGTGAGTGATGCGAGACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTG : 350 257 : GluAsnHisValLysIleLeuArgPheIleAlaHisIleGluGlnValMet : 273 |||!!.|||:!!!:!:!:|||!:!! :!!..! :!:!!: !:!!:!! GluLysHisLeuArgValLeuLys***ValCysLeuLeuAspLeuIleLeu 349 : GAGAAACATTTGAGAGTGTTGAAGTAAGTATGTTTGTTGGATTTGATTTTG : 297 vulgar: gi|383850520|ref|XP_003700843.1| 9 273 . LHQN01028641.1 1091 296 - 543 M 237 711 G 0 3 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 297 1091 543 - . gene_id 1 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 297 1091 . - . LHQN01028641.1 exonerate:protein2genome:local exon 297 1091 . - . insertions 3 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 297 1091 543 - . alignment_id 1 ; Query gi|383850520|ref|XP_003700843.1| ; Align 1092 10 711 ; Align 378 247 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 332 Query range: 22 -> 280 Target range: 1067 -> 296 23 : SerIleGlnLeuCysHisTrpIleLeuLysProLeuGlyValTrpProArgSerThrAsnLe : 43 |||:!!|||! ! !!..||| :!!||| !:!!|||!.!||||||!:!|||:!!::: SerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSerSer-- 1067 : AGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCGTCG-- : 1007 44 : uThrValAlaGlnIleTrpLeuTyrGlnLeuIleAsnValLeuCysTyrAlaPheIleSerP : 64 !.!:!!! !::!||| :!!! !!:!:!!:!:||||||:!!||||||.!! :!! !| -AsnLeuGluArgIle---IleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuP 1006 : -AATCTCGAGAGAATC---ATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTAT : 950 65 : heLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspValTyrAsnGlnIle : 84 || !:!!:!!||||||||||||:!!|||!!:|||||| !||| ! !!|||!..:!!:!: heThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysVal 949 : TCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTG : 890 85 : LysPhePheGlyProSerSerPheCysMetMetAlaIleMetLysTyrTyrLeuMetIleLe : 105 |||.!..!!||||||! !||| !!! :!!.!...!|||!!:!..||| !:!!:!!:!:|| LysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLe 889 : AAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCT : 827 106 : uHisGluAsnAspIleArgAspCysIleGlnArgIleGluLeuAspTrpLysAsnIleSerH : 126 |!.....!!. !|||||| !!! !.!!.!.!.!!!:||| !||||||!:!!..! ! . uArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetA 826 : GCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtga : 764 127 : isAspAspAspLysLysIleMetValGluLysAlaLysPheGlyArgGlnLeuIleAlaLeu : 146 .. ::: |||:::||||||:!!:!! ! |||||||||.!!||| ! ! !! ! rgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSer 763 : gaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCT : 704 147 : CysThrPhePheMetTyrSerGlyPheAlaPheTyrTyrIleValLeuProIleSerValGl : 167 ||||||.!!|||!!::!!.!!|||.!. ! |||! !:!!:!! ! !!.!!!!!..! CysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMe 703 : TGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGAT : 641 168 : yLysIleGlnAlaAlaAspAlaAsnLeuThrPheMetProLeuValPheProPheSerLysL : 188 ! :!! !!.!!.!:!!! !!.!:!!! !!!. !||| !!!.|||.!.! !||| tValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysG 640 : GGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAG : 578 189 : euIleIleAspThrArgTyrSerProThrAsnGluIleValPhePheLeuGlnLeuIleGly : 208 !:!!:!! ..! ! !:! !!! !||||||||||||.!!!!.! !|||!!!:!!..! lyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSer 577 : GGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCC : 518 209 : GlyAlaValMetHisGlyValThrSerAlaAlaCysGlyLeuAlaAlaMetLeuAlaValHi : 229 ||| !:!! !:!! ! !.!!! !::!!.! .!!|||.!!::! |||.!! !|| GlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHi 517 : GGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACA : 455 230 : sAlaCysGlyGlnMetGluValLeuMetAsnTrpLeuLysHisLeuVal<->AspGlyArgS : 249 ||||! !||||||:!!! |||:!!||| ! !:!!:!! !!!!!||| |||!.!||| sAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgA 454 : CGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGAC : 392 250 : erAspMetGlyAspThrValAspAlaArgIleAlaSerValValSerGlnHisValArgIle : 269 !! ! !||| ! ! !! !..!||| !!!!!:!!|||..!:!!|||:!!|||:!: rgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgVal 391 : GCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTG : 332 270 : LeuLysPheLeuGluLeuThrGluLysIleLeu : 280 ||||||! :!! ||| !!!: !|||||| LeuLys***ValCysLeuLeuAspLeuIleLeu 331 : TTGAAGTAAGTATGTTTGTTGGATTTGATTTTG : 297 vulgar: gi|383850681|ref|XP_003700913.1| 22 280 . LHQN01028641.1 1067 296 - 332 M 20 60 G 1 0 M 5 15 G 1 0 M 196 588 G 0 3 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 297 1067 332 - . gene_id 1 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 297 1067 . - . LHQN01028641.1 exonerate:protein2genome:local exon 297 1067 . - . insertions 3 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local similarity 297 1067 332 - . alignment_id 1 ; Query gi|383850681|ref|XP_003700913.1| ; Align 1068 23 60 ; Align 1008 44 15 ; Align 993 50 588 ; Align 402 246 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 284 Query range: 1 -> 278 Target range: 1115 -> 278 2 : AsnGlnSerLeuGlnProAsnLeuAsnTyrGluAsnAspIleIleTyrValThrLysTyrSe : 22 :!!:!!!!!:!! !!.!.:!!||| !..!! ! !||| ! !:!!!::!: AspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAs 1115 : GACAAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTGGAA : 1055 23 : rArgTrpIleLeuValSerIleGlyIleTrpProAlaSerLeuLysGlySerAlaLysPheL : 43 !|||||| :!! !||||||||| !|||||| !|||! !..!..! !! !!:!.!!: nArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSerSerAsnLeuGluArgIleI 1054 : TCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCGTCGAATCTCGAGAGAATCA : 992 44 : euSerLysIleAlaIleGlyPheGlyAsnLeuValLeuPhePheAlaIleIleProPheSer : 63 !!|||::!||| !! !! !.!! !! !! !!.!:!!.!.|||.!!|||||||||! !||| leSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIleProCysSer 991 : TCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATCCCTTGTTCG : 932 64 : LeuHisIleValLeuGluGlnLysAspThrValIleMetLeuLysMetLeuGlyPheLeuSe : 84 ||||||:!!:!!||||||:!!:!! ! ! !! ! :!!|||!!:|||||| ||||| LeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGlyProLeuSe 931 : CTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAG : 869 85 : rPheCysLeuIleSerValLeuLysTyrTrpAlaLeuAlaMetArgLysProLysIleGluA : 105 | !!! :!!.!!!!!:!!:!!!..||| !||| !:!!|||::: !! |||...! rHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgH 868 : CCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTC : 806 106 : rgCysIleGluLeuMetGlnThrAspTrpLysGlnValGluPheArgArgAsnArgHisMet : 125 .!! !.!!.!.! !|||:!!|||||||||!:! !..! :::......:::...::: isPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLysLysGluIle 805 : ACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaagaaagaaata : 746 126 : MetLeuLysTyrGlyLysValGlyArgAspLeuThrIleLeuCysIleValPheMetTyrSe : 146 ||||||||||||!.!||| !!.!!||| !! !.!!|||! !|||! :!!|||!!::!!.! MetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGl 745 : atgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGG : 683 147 : rGlyGlyThrIleTyrHisThrIleMetGlnTyr<->AlaIleGlySerPheIleAspGluH : 166 !||| ! ! !||| !..!!!:! !!:! .!!!!:! ! ! ! :!!! .!.. yGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValValGlyAsnG 682 : TGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTGGAAACG : 620 167 : isAsnArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuTyrAspValGlnLys : 186 !.!.!! !! !:!:::: !||| !! |||! !|||!.!!.!||| ! |||.!.! ! luThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThr 619 : AGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACG : 560 187 : IleHisValTyrValLeuValTyrThrValHisCysMetCysGlyTyrValIleTyrSerVa : 207 ! ! !:!! !!! !:!!||| ! ! !!!.! !:!:! !|||!:!:!! !!!!! AsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAsnThrSe 559 : AATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAACACCAG : 497 208 : lThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisThrCysGlyGlnIleAspI : 228 !.!! !.!!!.! .!!|||.!!::! !.!..!!:!!|||.!!! !||||||:!:! !: rAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuGlyV 496 : TGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGGGCG : 434 229 : leValLeuSerArgLeuAsnGlyLeuValAspAspAsnLeuMetArg<->HisAspAspLeu : 247 !:|||:!!! ! !:!!.!.! !!!!|||..!||| ! ||| ! ||||||! ! alValMetLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLysAspAspHis 433 : TGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAGGACGATCAT : 374 248 : AsnGluArgLeuIleGluIleValGluHisHisLeuArgThrLeuArgPheSerAlaMetMe : 268 !!!:..!:!! !||||||||| ! |||||||||..!|||!:!! !..!:!!:! PheAspGluIleProThrIleValGluLysHisLeuArgValLeuLys***ValCysLeuLe 373 : TTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTGAAGTAAGTATGTTTGTT : 311 269 : tGluThrValLeuGlnGluValCysPheLeu : 278 !!!: !:!!|||! ! !! ! |||||| uAspLeuIleLeuProMetGlyValPheLeu 310 : GGATTTGATTTTGCCGATGGGTGTGTTTCTC : 279 vulgar: gi|383850742|ref|XP_003700935.1| 1 278 . LHQN01028641.1 1115 278 - 284 M 156 468 G 0 3 M 86 258 G 0 3 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 279 1115 284 - . gene_id 1 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 279 1115 . - . LHQN01028641.1 exonerate:protein2genome:local exon 279 1115 . - . insertions 6 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 279 1115 284 - . alignment_id 1 ; Query gi|383850742|ref|XP_003700935.1| ; Align 1116 2 468 ; Align 645 158 258 ; Align 384 244 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 218 Query range: 22 -> 161 Target range: 432 -> 843 23 : SerIleGlnLeuCysHisTrpIleLeuLysProLeuGlyValTrpProArgSerThrAsnLeuT : 44 |||:!!|||! ! !!..||| :!!||| !:!!|||..!||||||!:!! !:!!::: ! SerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerAsnL 433 : AGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGAACC : 496 45 : hrValAlaGlnIleTrpLeuTyrGlnLeuIleAsnValLeuCysTyrAlaPheIleSerPheLe : 65 !! ! !.!.||| ! !!:!:!!:!!||||||:!!||||||.!! ||| !|||! euGluArgAsnIle------SerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSe 497 : TCGAGAGAAACATC------TCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTC : 553 66 : uLeuValProCysSerLeuTyrValIleLeuGluValGluAspValTyrAsnGlnIleLysPhe : 86 !:!!:!!||||||||||||:!!:!!!!:|||||| !! ! ! !!|||!..:!!:!:|||.!. rIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIle 554 : GATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATA : 616 87 : PheGlyProSerSerPheCysMetMetAlaIleMetLysTyrTyrLeuMetIleLeuHisGluA : 108 .!!||| !!! !||| !!! :!!.!...!|||!!:!..||| !:!!:!!:!:|||!.....! LeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgL 617 : CTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTA : 682 109 : snAspIleArgAspCysIleGlnArgIleGluLeuAspTrpLysAsnIleSerHisAspAspAs : 129 !. !|||!.! !!! !:!!.!.!.!!!:||| !||||||!:!!..! :::... ::: ysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLy 683 : AAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaa : 745 130 : pLysLysIleMetValGluLysAlaLysPheGlyArgGlnLeuIleAlaLeuCysThrPhePhe : 150 |||::::::|||:!!:!! ! |||||||||.!!||| ! ! !!!!|||.!!.!!||| sLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePhe 746 : gaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTC : 808 151 : MetTyrSerGlyPheAlaPheTyrTyrIleVal : 161 !!::!!.!!|||.!. ! |||! !:!!:!! IleHisGlyGlyIleLeuGlyTyrCysValMet 809 : ATACACGGTGGTATACTTGGATATTGTGTTATG : 843 vulgar: gi|383850681|ref|XP_003700913.1| 22 161 . LHQN01028951.1 432 843 + 218 M 26 78 G 2 0 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 433 843 218 + . gene_id 1 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 433 843 . + . LHQN01028951.1 exonerate:protein2genome:local exon 433 843 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 433 843 218 + . alignment_id 1 ; Query gi|383850681|ref|XP_003700913.1| ; Align 433 23 78 ; Align 511 51 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 369 Query range: 9 -> 162 Target range: 408 -> 867 10 : AsnProIleGlyLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyV : 31 ||| !! !!.! !||||||||||||||||||! !||||||||| :!!||| !||||||. AsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyT 409 : AATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCA : 472 32 : alTrpProValLeuThrSerArgAsnGluLysIleValSerLeuThrLeuAsnValIleCysTy : 52 .!|||||| !!!!:!!|||!.! !|||!:!! !:!!|||! !! !||||||||||||||||| hrTrpProGlnPheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTy 473 : CATGGCCACAGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTA : 535 53 : rCysSerIleLeuValThrValValProCysLeuLeuArgIlePheLeuGluAspAspAspLeu : 73 | !:!!|||||| !!:!!:!!:!!||||||! !|||!.!:!!.!.|||||| ! ! !!!! rThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPhe 536 : CACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTC : 598 74 : LeuAlaLysLeuLysMetThrGlyAlaMetSerHisCysPheAlaGlyGlyLeuAsnTyrThrT : 95 ! !.!!|||:!!|||!!: !|||:!!:!!||||||!! ! ! !! !:!!!:!||||||! TyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrM 599 : TACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCA : 664 96 : hrLeuLeuLeuArgArgLysGluIleHisTyrCysIleLysGlnIleAsnSerAspTrpArgTh : 116 !|||||||||||||||||| ||||||:!!! !:!!!!.!!.!!:.!.!!!||||||||||| etLeuLeuLeuArgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgTh 665 : TGCTGTTGCTGCGACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAAC : 727 117 : rValLysArgProAspAlaGlnGlnValMetLeuLysAspAlaLysPheGlyArgSerValAla : 137 |..! ||| ::: ::::::|||||||||||| !!|||||||||.!!|||! !!.!||| rThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAla 728 : GACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCG : 790 138 : AlaPheCysAlaIlePheMetGlnGlyGlyValPheCysPheSerValAlaThrValPheThrM : 159 !|||||||||||||||!!:!!.||||||:!!.!! ! !:!!!!||| !|||!.!! !|||! IlePheCysAlaIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaSerThrT 791 : ATTTTTTGTGCGATTTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTCCACCA : 856 160 : etGluIleVal : 162 ! !:!!||| hrMetValVal 857 : CGATGGTTGTC : 867 vulgar: gi|383850520|ref|XP_003700843.1| 9 162 . LHQN01028951.1 408 867 + 369 M 153 459 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 409 867 369 + . gene_id 1 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 409 867 . + . LHQN01028951.1 exonerate:protein2genome:local exon 409 867 . + . insertions 0 ; deletions 0 LHQN01028951.1 exonerate:protein2genome:local similarity 409 867 369 + . alignment_id 1 ; Query gi|383850520|ref|XP_003700843.1| ; Align 409 10 459 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 325 Query range: 6 -> 165 Target range: 396 -> 867 7 : ValValProThrAspLeuAspSerLeuSerAspTyrSerLeuGlnLeuAsnLysTrpLeuLeuI : 28 |||..! !! !:!!:!! !:!! !||||||||||||||||||! !|||::!||| !:!!! ValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetL 397 : GTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGA : 460 29 : leThrIleGlyAlaTrpProSerThrProSerThrThrLysIleGluLysIleValSerPheIl : 49 !!:!||||||.!!||||||..! ! !!||| !!.:!!|||!:!! !:!!||| || ysSerIleGlyThrTrpProGlnPheSerSer------AsnLeuGluArgAsnIleSerArgIl 461 : AAAGCATAGGCACATGGCCACAGTTCTCGTCG------AACCTCGAGAGAAACATCTCTCGAAT : 517 50 : eLeuIleValIleCysTyrCysThrIleLeuThrThrValLeuProSerIleLeuTyrValIle : 70 ||||! !|||||||||||| !.!!|||||| !:!!:!!:!!|||!!! |||:!!:!!!!: eLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMet 518 : ATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATG : 580 71 : LeuAlaAspGluAspLeuGlnGlnLysLeuMetValMetGlyProLeuSerHisTrpPheIleG : 92 |||! ! ! ! ! !!!! ! !|||:!!! :!!:!:||| !!|||||||||||| ! .!! LeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheC 581 : CTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCT : 646 93 : lyGlyIleAsnTyrThrThrLeuLeuLeuArgGlyLysGluIleGlnCysCysIleLysArgVa : 113 !! !|||!:!||||||! !|||||||||||| !!||| |||!!. !! !:!!!!.!.!:! ysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPheValAsnHisMe 647 : GTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTTTGTCAATCATAT : 709 114 : lGlnThrAspTrpArgThrValThrArgLeuAsnAspGlnLysIleMetMetArgAsnAlaGlu : 134 !:!!|||||||||||||||..!|||||| ... :::::::::|||:!!!:! !!|||:!! tGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLys 710 : GGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAA : 772 135 : IleGlyArgTyrValValValCysCysThrAlaPheMetGlnGlyGlyValLeuCysTyrCysV : 156 .!!.!!||||||!.!!.!:!!! !|||.!! !|||!!:!!.||||||:!!||| ! ||||||| PheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleLeuGlyTyrCysV 773 : TTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACACGGTGGTATACTTGGATATTGTG : 838 157 : alIleThrGlyPheThrThrGluValVal : 165 ||!!:|||!.!! !|||||| !|||||| alMetThrAlaSerThrThrMetValVal 839 : TTATGACAGCGTCCACCACGATGGTTGTC : 867 vulgar: gi|383850716|ref|XP_003700922.1| 6 165 . LHQN01028951.1 396 867 + 325 M 32 96 G 2 0 M 125 375 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 397 867 325 + . gene_id 1 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 397 867 . + . LHQN01028951.1 exonerate:protein2genome:local exon 397 867 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 397 867 325 + . alignment_id 1 ; Query gi|383850716|ref|XP_003700922.1| ; Align 397 7 96 ; Align 493 41 375 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 233 Query range: 14 -> 158 Target range: 426 -> 855 15 : AsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProIleGlyIleTrpProHisSerAspM : 36 :!!! !|||:!!||||||||||||||| !:!!||| !||||||! !||||||!!.! !... AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSer- 427 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCG- : 490 37 : etSerArgThrLysLysLeuTyrAspTrpPheThrTyrValValCysTyrGlyLeuIleSerPh : 57 |||!.! !:!!!:! ! !..! ! .!. ! !!|||:!!|||||| ! !||| !|| --SerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPh 491 : --TCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATT : 550 58 : eLeuPheValProCysSerMetTyrValPheLeuGluValGluAspLeuTyrAsnLysIleLys : 78 |! !.!.:!!|||||||||:!!:!!:!!.!.|||||| !! ! !!!!|||!..|||:!:||| eSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLys 551 : CTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAA : 613 79 : LeuPheGlyProLeuIlePhePheLeuMetAlaPheAlaLysTyrTyrLeuLeuIleTyrHisG : 100 :!!.!!||| !!|||! ! !!:::!!.!...!.!! !!..||| !:!!|||:!: !.. IleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgA 614 : ATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGAC : 679 101 : lyAsnAspIleArgGluCysIleGluArgIleLysTrpAspTrpLysAsnIleThrTyrHisAs : 121 !!!!. !|||!.!.!.! !:!!.!.!.!!!::!! ||||||!:!!..! ||| :: rgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGl 680 : GTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaagga : 742 122 : pAspLysAsnIleMetLeuGluAsnAlaAsnPheGlyArgArgLeuValThrValCysThrPhe : 142 : |||...:::||||||:!! !!|||!!.|||.!!||| ! !!.!! ! !!|||.!!.!! uLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIle 743 : gaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATT : 805 143 : PheMetTyrSerGlyPheAlaSerTyrTyrIleIleIleProIleThr : 158 |||!!::!!.!!|||.!. !.!!|||! !:!!!!:! ! !! !||| PheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaSerThr 806 : TTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTCCACC : 855 vulgar: gi|383850508|ref|XP_003700837.1| 14 158 . LHQN01028951.1 426 855 + 233 M 21 63 G 1 0 M 122 366 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 427 855 233 + . gene_id 1 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 427 855 . + . LHQN01028951.1 exonerate:protein2genome:local exon 427 855 . + . insertions 0 ; deletions 1 LHQN01028951.1 exonerate:protein2genome:local similarity 427 855 233 + . alignment_id 1 ; Query gi|383850508|ref|XP_003700837.1| ; Align 427 15 63 ; Align 490 37 366 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 358 Query range: 4 -> 163 Target range: 396 -> 867 5 : IleIleArgThrAspLeuAspSerLeuPheAspTyrSerLeuGlnLeuAsnLysTrpLeuLeuI : 26 :!!! !..!! !:!!:!! !:!! ! !|||||||||||||||! !|||::!||| !:!!! ValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetL 397 : GTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGA : 460 27 : leProIleGlyAlaTrpProSerThrThrSerLysIleGluArgValValSerLeuIleLeuIl : 47 ! !||||||.!!||||||..! !:!!|||!!.:!!|||||| !:!!|||! !||||||! ysSerIleGlyThrTrpProGlnPheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAs 461 : AAAGCATAGGCACATGGCCACAGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAA : 523 48 : eValValSerTyrCysSerIleLeuThrThrValValProCysIleLeuTyrValIleLeuAsp : 68 !|||:!!!!!||| !:!!|||||| !:!!:!!:!!|||||| |||:!!:!!!!:|||!!: nValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGlu 524 : CGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAA : 586 69 : AspAspLeuLeuThrGlnLysLeuMetMetValGlyProLeuSerHisTrpPheIleGlyGlyI : 90 ! ! !!!! ! !|||:!!! !!::!!||| !!|||||||||||| ! .!! !! !| LysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleI 587 : AAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCA : 652 91 : leAsnTyrThrThrLeuLeuLeuArgLysLysGluIleGlnCysCysValLysHisIleHisMe : 111 ||!:!||||||! !||||||||||||:::||| |||!!. !! !|||!!. ||||| leSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPheValAsn------HisMe 653 : TCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTTTGTCAAT------CATAT : 709 112 : tGlnThrAspTrpArgSerValThrLysSerLysAspGlnGluIleMetLeuLysAspAlaGlu : 132 |:!!||||||||||||!!!..!|||:::...::: :::|||:::||||||||| !!|||:!! tGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLys 710 : GGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAA : 772 133 : PheGlyArgTyrValValIlePheCysThrAlaPheMetGlnGlyGlyValLeuCysTyrCysV : 154 |||.!!||||||!.!!.!|||||||||.!! !|||!!:!!.||||||:!!||| ! ||||||| PheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleLeuGlyTyrCysV 773 : TTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACACGGTGGTATACTTGGATATTGTG : 838 155 : alIleThrGlyPheThrThrGluValIle : 163 ||!!:|||!.!! !|||||| !|||:!! alMetThrAlaSerThrThrMetValVal 839 : TTATGACAGCGTCCACCACGATGGTTGTC : 867 vulgar: gi|383850718|ref|XP_003700923.1| 4 163 . LHQN01028951.1 396 867 + 358 M 103 309 G 2 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 397 867 358 + . gene_id 1 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 397 867 . + . LHQN01028951.1 exonerate:protein2genome:local exon 397 867 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 397 867 358 + . alignment_id 1 ; Query gi|383850718|ref|XP_003700923.1| ; Align 397 5 309 ; Align 706 110 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 337 -> 382 Target range: 212 -> 77 338 : GluGlnCysGlnAsnValGlyLeuSerAlaCysMetIleAspTrpTyrArgPheArgGlnLysL : 359 |||:!! ! !!.|||||| !!.!!.!! !|||! !!!:|||||||||!!. !||||||! GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 360 : ysAlaLeuGlyLeuIleLeuIleValAlaIleSerAsnSerSerThrLysLeuThrAlaGlyLy : 380 |||||||||!!!:!!:!!|||:!!:!!! !|||!:!! ! !! !|||:!!||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 381 : sLeuVal : 382 |!!!||| sPheVal 85 : ATTCGTA : 78 vulgar: gi|383850736|ref|XP_003700932.1| 337 382 . LHQN01029187.1 212 77 - 102 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 78 212 102 - . gene_id 1 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 78 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 78 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 78 212 102 - . alignment_id 1 ; Query gi|383850736|ref|XP_003700932.1| ; Align 213 338 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850742|ref|XP_003700935.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 330 -> 376 Target range: 215 -> 77 331 : IleGluLysSerThrSerIleGlyThrSerSerPheGluIleAspTrpTyrArgLeuProThrL : 352 ||||||:!!!!!|||!.!:!!||| !!.! !!:! !! !!!:|||||||||||| !! !| IleGluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnL 215 : ATCGAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAA : 152 353 : ysThrIleArgGlyLeuIleLeuIleIleAlaMetSerAsnAsnProValLysIleSerAlaGl : 373 ||||| !! !|||!!!:!!:!!||||||:!!! |||!:!! !:!!||||||!!!||||| ysThrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGl 151 : AAACTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGG : 89 374 : yGlyIleVal : 376 | !.!!||| yLysPheVal 88 : AAAATTCGTA : 78 vulgar: gi|383850742|ref|XP_003700935.1| 330 376 . LHQN01029187.1 215 77 - 100 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 78 215 100 - . gene_id 1 ; sequence gi|383850742|ref|XP_003700935.1| ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 78 215 . - . LHQN01029187.1 exonerate:protein2genome:local exon 78 215 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 78 215 100 - . alignment_id 1 ; Query gi|383850742|ref|XP_003700935.1| ; Align 216 331 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 331 -> 378 Target range: 215 -> 74 332 : MetGluGlnCysAsnArgValAlaAspValValTyrMetThrAsnTrpTyrCysMetProTyrA : 353 !!:|||:!! !!.!!:!|||!.!! !||||||||||||.!.|||||| ! :!! !! ! ! IleGluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnL 215 : ATCGAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAA : 152 354 : rgSerIleLeuAspLeuIleLeuIleIleSerArgSerAsnValValThrLysIleThrAlaGl : 374 :!!!! !|||! !!!!:!!:!!|||||||||||||||!:!:!!|||! !|||||||||||||| ysThrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGl 151 : AAACTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGG : 89 375 : yLysValIleTyr : 378 |||| !!:!!||| yLysPheValTyr 88 : AAAATTCGTATAC : 75 vulgar: gi|383850520|ref|XP_003700843.1| 331 378 . LHQN01029187.1 215 74 - 120 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 75 215 120 - . gene_id 1 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 75 215 . - . LHQN01029187.1 exonerate:protein2genome:local exon 75 215 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 75 215 120 - . alignment_id 1 ; Query gi|383850520|ref|XP_003700843.1| ; Align 216 332 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 145 Query range: 336 -> 389 Target range: 212 -> 53 337 : GluGlnCysThrLysValGlyGluAlaValTyrMetThrGluTrpTyrHisLeuProGlyLysA : 358 |||:!! !||||||||||||! ! !|||||||||||||||||||||!..||| !! !||| GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 359 : spIleLeuAspLeuValLeuIleIleSerArgSerSerValValThrLysIleThrAlaGlyLy : 379 ! !|||! !!!!|||:!!||||||||||||||||||:!!|||! !||||||||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 380 : sIleValHisMetSerLeuTyrThrPheThr : 389 |.!!|||:!! !!!! !!:!..! ||| sPheValTyr***ThrSerPheValAlaThr 85 : ATTCGTATACTGAACATCGTTTGTCGCAACA : 54 vulgar: gi|383850716|ref|XP_003700922.1| 336 389 . LHQN01029187.1 212 53 - 145 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 54 212 145 - . gene_id 1 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 54 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 54 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 54 212 145 - . alignment_id 1 ; Query gi|383850716|ref|XP_003700922.1| ; Align 213 337 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 334 -> 379 Target range: 212 -> 77 335 : GluGlnCysLysAsnValGlyAspSerValTyrMetThrAsnTrpTyrTyrLeuProAspLysH : 356 |||:!! !! !!.||||||! !.!||||||||||||.!.|||||| ||| !!.!.||| GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 357 : isIleLeuAspLeuLeuLeuIleIleSerArgSerSerThrValIleLysMetThrAlaGlyLy : 377 ! !|||! !!!!:!!:!!||||||||||||||||||! !|||||||||!!:||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 378 : sPheVal : 379 ||||||| sPheVal 85 : ATTCGTA : 78 vulgar: gi|383850718|ref|XP_003700923.1| 334 379 . LHQN01029187.1 212 77 - 130 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 78 212 130 - . gene_id 1 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 78 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 78 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 78 212 130 - . alignment_id 1 ; Query gi|383850718|ref|XP_003700923.1| ; Align 213 335 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 332 -> 377 Target range: 212 -> 77 333 : GluGlnCysLysLysIleGlyGluMetThrTyrMetThrGluTrpTyrArgLeuProGlyAsnL : 354 |||:!! !! |||:!!|||! !! ..!|||||||||||||||||||||||| !! !!!.! GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 355 : ysLysLeuTyrCysIleMetIleIleAlaMetSerAsnSerSerMetLysLeuThrAlaGlySe : 375 ||| !! !:!!|||||||||:!!! |||!:!! ! !!!:|||:!!|||||||||!. hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 376 : rMetVal : 377 !.!.||| sPheVal 85 : ATTCGTA : 78 vulgar: gi|383850508|ref|XP_003700837.1| 332 377 . LHQN01029187.1 212 77 - 104 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 78 212 104 - . gene_id 1 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 78 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 78 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 78 212 104 - . alignment_id 1 ; Query gi|383850508|ref|XP_003700837.1| ; Align 213 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850681|ref|XP_003700913.1| PREDICTED: odorant receptor 22c-like [Megachile rotundata] Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 339 -> 384 Target range: 212 -> 77 340 : GluGluCysArgLysIleGlyGluMetSerTyrMetIleAspTrpTyrArgLeuProGlyLysA : 361 |||||| !! !|||:!!|||! !! !||||||! !!!:|||||||||||| !! !|||! GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 362 : rgLysLeuSerValIleLeuMetIleGluMetSerAsnSerSerIleLysLeuThrAlaGlyAs : 382 ! |||.!! !!:!!:!!!!:|||...! |||!:!! ! !||||||:!!|||||||||!! hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 383 : nIleVal : 384 ..!!||| sPheVal 85 : ATTCGTA : 78 vulgar: gi|383850681|ref|XP_003700913.1| 339 384 . LHQN01029187.1 212 77 - 101 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 78 212 101 - . gene_id 1 ; sequence gi|383850681|ref|XP_003700913.1| ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 78 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 78 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 78 212 101 - . alignment_id 1 ; Query gi|383850681|ref|XP_003700913.1| ; Align 213 340 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850686|ref|XP_003700914.1| PREDICTED: odorant receptor 47a-like [Megachile rotundata] Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 338 -> 383 Target range: 212 -> 77 339 : GluGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpHisArgLeuSerGlyLysL : 360 |||:!! !! |||||||||! ! ! !||||||! !||||||:!!||||||||| !|||! GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 361 : ysLysLeuCysCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAs : 381 ||| !!! !:!!:!!||||||:!!! |||!:!! ! !||||||:!!|||||||||!! hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 382 : nMetVal : 383 ..!.||| sPheVal 85 : ATTCGTA : 78 vulgar: gi|383850686|ref|XP_003700914.1| 338 383 . LHQN01029187.1 212 77 - 101 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 78 212 101 - . gene_id 1 ; sequence gi|383850686|ref|XP_003700914.1| ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 78 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 78 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 78 212 101 - . alignment_id 1 ; Query gi|383850686|ref|XP_003700914.1| ; Align 213 339 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: LHQN01036086.1 Habropoda laboriosa contig36086, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 89 -> 151 Target range: 6 -> 192 90 : TyrArgSerGluLeuAlaAspLeuIleLeuTyrMetGlnGluHisPheTrpHisCysGluTyrA : 111 :!!|||! !|||!!! !! |||||| !!:!! !|||||| ! |||||||||! !.!.|||: HisArgIleGluPheTyrGlyLeuIleArgPheThrGlnGluLysPheTrpHisPheAsnTyrA 7 : CACAGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAGAGAAATTCTGGCATTTCAACTATA : 70 112 : spGluArgGluLysAlaIleLeuAlaSerCysArgLysThrCysIlePhePheThrIleSerVa : 132 !!..!||||||||| !||||||:!!..!|||!:!|||! !|||! ! !!|||! !:!!:!! ! snSerArgGluLysLeuIleLeuSerGluCysLysLysIleCysThrValPheIleValAlaPh 71 : ATTCACGGGAGAAGTTAATTTTATCCGAGTGCAAGAAGATATGTACCGTTTTCATCGTTGCCTT : 133 133 : lThrPheIleGlyGluCysAlaValPheSerTyrLeuValThrProIleValValAsn : 151 !!:!||| ! !:!! !!.!! ! !.!!|||:!!||||||||||||:!! ||| eSerPheCysThrGlnGlyThrCysAlaGlyTyrValValThrProIleLeuGlyAsn 134 : CAGCTTCTGTACACAGGGCACGTGTGCTGGTTACGTAGTGACACCTATTTTAggtaat : 192 vulgar: gi|383857331|ref|XP_003704158.1| 89 151 . LHQN01036086.1 6 192 + 140 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01036086.1 exonerate:protein2genome:local gene 7 192 140 + . gene_id 1 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation . LHQN01036086.1 exonerate:protein2genome:local cds 7 192 . + . LHQN01036086.1 exonerate:protein2genome:local exon 7 192 . + . insertions 0 ; deletions 0 LHQN01036086.1 exonerate:protein2genome:local similarity 7 192 140 + . alignment_id 1 ; Query gi|383857331|ref|XP_003704158.1| ; Align 7 90 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850736|ref|XP_003700932.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 341 -> 382 Target range: 121 -> 244 342 : AsnValGlyLeuSerAlaCysMetIleAspTrpTyrArgPheArgGlnLysLysAlaLeuGlyL : 363 !!.|||||| !!.!!.!! !|||! !!!:|||||||||!!. !||||||! |||||||||| LysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGlyL 122 : AAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGGTT : 185 364 : euIleLeuIleValAlaIleSerAsnSerSerThrLysLeuThrAlaGlyLysLeuVal : 382 ||:!!:!!|||:!!:!!! !|||!:!! ! !! !|||:!!||||||||||||!!!||| euValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheVal 186 : TGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTA : 244 vulgar: gi|383850736|ref|XP_003700932.1| 341 382 . LHQN01048470.1 121 244 + 101 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 122 244 101 + . gene_id 1 ; sequence gi|383850736|ref|XP_003700932.1| ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 122 244 . + . LHQN01048470.1 exonerate:protein2genome:local exon 122 244 . + . insertions 0 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 122 244 101 + . alignment_id 1 ; Query gi|383850736|ref|XP_003700932.1| ; Align 122 342 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850520|ref|XP_003700843.1| PREDICTED: odorant receptor 82a-like [Megachile rotundata] Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 319 -> 387 Target range: 85 -> 280 320 : AsnValPheIleMetCysTyrIleGlyGluValLeuMetGluGlnCysAsnArgValAlaAspV : 341 |||:!!||||||:!:|||||||||||||||..! !.!!:!|||!.!! AsnIlePheIleLeuCysTyrIleGlyGluThr---------------ThrLysValGlyGlyL 86 : AATATATTCATACTTTGTTACATCGGAGAGACT---------------ACCAAAGTCGGAGGAA : 134 342 : alValTyrMetThrAsnTrpTyrCysMetProTyrArgSerIleLeuAspLeuIleLeuIleIl : 362 !||||||||||||.!.|||||| ! :!! !! ! !:!!!! !|||! !|||:!!:!!||||| ysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGlyLeuValMetIleIl 135 : AAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGGTTTGGTAATGATCAT : 197 363 : eSerArgSerAsnValValThrLysIleThrAlaGlyLysValIleTyr<-><->MetSerIle : 381 ||||||||||!:!:!!|||! !|||||||||||||||||| !!:!!||| !|||:!! eSerArgSerSerMetValIleLysIleThrAlaGlyLysPheValTyr***ThrSerSerVal 198 : CTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTATACTGAACATCGTCTGTC : 260 382 : TyrThrPheGlyAspVal : 387 ||||||||||||||| AlaThrPheGlyAspVal 261 : GCAACATTTGGCGATGTG : 280 vulgar: gi|383850520|ref|XP_003700843.1| 319 387 . LHQN01048470.1 85 280 + 124 M 11 33 G 5 0 M 43 129 G 0 6 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 86 280 124 + . gene_id 1 ; sequence gi|383850520|ref|XP_003700843.1| ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 86 280 . + . LHQN01048470.1 exonerate:protein2genome:local exon 86 280 . + . insertions 6 ; deletions 5 LHQN01048470.1 exonerate:protein2genome:local similarity 86 280 124 + . alignment_id 1 ; Query gi|383850520|ref|XP_003700843.1| ; Align 86 320 33 ; Align 119 336 129 ; Align 254 379 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850716|ref|XP_003700922.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 337 -> 382 Target range: 112 -> 247 338 : GlnCysThrLysValGlyGluAlaValTyrMetThrGluTrpTyrHisLeuProGlyLysAspI : 359 :!! !||||||||||||! ! !|||||||||||||||||||||!..||| !! !||| ! GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrA 113 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTG : 176 360 : leLeuAspLeuValLeuIleIleSerArgSerSerValValThrLysIleThrAlaGlyLysIl : 380 !|||! !||||||:!!||||||||||||||||||:!!|||! !||||||||||||||||||.! laLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPh 177 : CTCTCGGTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATT : 239 381 : eValHis : 382 !|||:!! eValTyr 240 : CGTATAC : 247 vulgar: gi|383850716|ref|XP_003700922.1| 337 382 . LHQN01048470.1 112 247 + 143 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 113 247 143 + . gene_id 1 ; sequence gi|383850716|ref|XP_003700922.1| ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 113 247 . + . LHQN01048470.1 exonerate:protein2genome:local exon 113 247 . + . insertions 0 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 113 247 143 + . alignment_id 1 ; Query gi|383850716|ref|XP_003700922.1| ; Align 113 338 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850718|ref|XP_003700923.1| PREDICTED: odorant receptor 2a-like [Megachile rotundata] Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 335 -> 379 Target range: 112 -> 244 336 : GlnCysLysAsnValGlyAspSerValTyrMetThrAsnTrpTyrTyrLeuProAspLysHisI : 357 :!! !! !!.||||||! !.!||||||||||||.!.|||||| ||| !!.!.||| ! GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrA 113 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTG : 176 358 : leLeuAspLeuLeuLeuIleIleSerArgSerSerThrValIleLysMetThrAlaGlyLysPh : 378 !|||! !|||:!!:!!||||||||||||||||||! !|||||||||!!:|||||||||||||| laLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPh 177 : CTCTCGGTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATT : 239 379 : eVal : 379 |||| eVal 240 : CGTA : 244 vulgar: gi|383850718|ref|XP_003700923.1| 335 379 . LHQN01048470.1 112 244 + 129 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 113 244 129 + . gene_id 1 ; sequence gi|383850718|ref|XP_003700923.1| ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 113 244 . + . LHQN01048470.1 exonerate:protein2genome:local exon 113 244 . + . insertions 0 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 113 244 129 + . alignment_id 1 ; Query gi|383850718|ref|XP_003700923.1| ; Align 113 336 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383850508|ref|XP_003700837.1| PREDICTED: odorant receptor 4-like [Megachile rotundata] Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 333 -> 377 Target range: 112 -> 244 334 : GlnCysLysLysIleGlyGluMetThrTyrMetThrGluTrpTyrArgLeuProGlyAsnLysL : 355 :!! !! |||:!!|||! !! ..!|||||||||||||||||||||||| !! !!!.! GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrA 113 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTG : 176 356 : ysLeuTyrCysIleMetIleIleAlaMetSerAsnSerSerMetLysLeuThrAlaGlySerMe : 376 ||| !! :!!|||||||||:!!! |||!:!! ! !!!:|||:!!|||||||||!.!.! laLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPh 177 : CTCTCGGTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATT : 239 377 : tVal : 377 .||| eVal 240 : CGTA : 244 vulgar: gi|383850508|ref|XP_003700837.1| 333 377 . LHQN01048470.1 112 244 + 100 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 113 244 100 + . gene_id 1 ; sequence gi|383850508|ref|XP_003700837.1| ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 113 244 . + . LHQN01048470.1 exonerate:protein2genome:local exon 113 244 . + . insertions 0 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 113 244 100 + . alignment_id 1 ; Query gi|383850508|ref|XP_003700837.1| ; Align 113 334 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857331|ref|XP_003704158.1| PREDICTED: odorant receptor 13a-like [Megachile rotundata] Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 182 -> 218 Target range: 312 -> 420 183 : GlnIleLeuIleLeuPheHisIleGlySerCysTyrPheCysPheAspAsnMetPheSerIleP : 204 ||| !||| !:!!!:!!!.:!!..! !||||||.!!||||||||||||:::||| |||. GlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePhePheIleM 313 : CAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttttcatta : 376 205 : heCysLeuHisLeuAlaThrGlnPheArgIleLeuGlnTyrArg : 218 ..|||||||||:!!||| !|||||||||||||||||||||||| etCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 377 : tgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: gi|383857331|ref|XP_003704158.1| 182 218 . LHQN01049471.1 312 420 + 128 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 313 420 128 + . gene_id 1 ; sequence gi|383857331|ref|XP_003704158.1| ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 313 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 313 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 313 420 128 + . alignment_id 1 ; Query gi|383857331|ref|XP_003704158.1| ; Align 313 183 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857305|ref|XP_003704145.1| PREDICTED: odorant receptor Or2-like [Megachile rotundata] Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 183 -> 219 Target range: 312 -> 420 184 : GlnIleLeuCysValTyrHisValAlaIleSerTyrPheCysPheAspAsnPheLeuCysIleL : 205 ||| !|||! !||||||!!.||| !:!:!!!|||.!!||||||||||||...... |||: GlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePhePheIleM 313 : CAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttttcatta : 376 206 : euCysLeuAsnIleThrGlyGlnPheArgIleLeuGlnHisArg : 219 ::||||||:!!:!:.!!|||||||||||||||||||||:!!||| etCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 377 : tgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: gi|383857305|ref|XP_003704145.1| 183 219 . LHQN01049471.1 312 420 + 119 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 313 420 119 + . gene_id 1 ; sequence gi|383857305|ref|XP_003704145.1| ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 313 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 313 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 313 420 119 + . alignment_id 1 ; Query gi|383857305|ref|XP_003704145.1| ; Align 313 184 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805808284|ref|XP_012146523.1| PREDICTED: LOW QUALITY PROTEIN: odorant receptor coreceptor-like [Megachile rotundata] Target: KQ414731.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold204, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 947 Query range: 64 -> 317 Target range: 591043 -> 589191 65 : MetMetLysPheLysGlnGlnGlyLeuValAlaAspLeuMetProAsnIleLysLeuM : 84 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| MetMetLysPheLysGlnGlnGlyLeuValAlaAspLeuMetProAsnIleLysLeuM 591043 : ATGATGAAGTTCAAGCAACAGGGGCTAGTCGCGGACTTAATGCCCAACATAAAGCTGA : 590986 85 : etLysAlaSerGlyHisPheLeuPheAsn<->TyrAlaAspGlySerGlyLysSerMe : 102 ||||||||||||||||||||||||||||| |||.!!|||..!:!! !|||.!!|| etLysAlaSerGlyHisPheLeuPheAsnTyrTyrThrAspAsnAlaThrLysGlyMe 590985 : TGAAAGCCAGTGGGCATTTTTTGTTCAACTATTACACTGACAATGCTACGAAGGGTAT : 590929 103 : tGlnLysIleTyrSerSer >>>> Target Intron 1 >>>> ValHisLeuV : 112 |!!.|||||||||!!!! ! 419 bp |||||||||| tHisLysIleTyrCysIle++ ++ValHisLeuV 590928 : GCACAAAATCTACTGCATCgt.........................agGTGCATCTAG : 590480 113 : alLeuIleLeuMetGlnPheAlaPheCysGlyIleAsnLeuValGlnGluArgGluAs : 131 |||||||||||!!:||||||!.!||||||||||||||||||:!! !|||!!!!!:|| alLeuIleLeuIleGlnPheGlyPheCysGlyIleAsnLeuMetLeuGluSerAspAs 590479 : TACTGATCCTAATACAGTTCGGATTCTGCGGTATAAACCTAATGTTGGAGAGCGACGA : 590423 132 : pValAspAspLeuThrAlaAsnThrIleThrMetLeuHisPheThrHisThrIleVal : 150 |||||||!!:||||||||||||||||||||||||||| !|||||||||!:!:!:||| pValAspGluLeuThrAlaAsnThrIleThrMetLeuPhePheThrHisSerValVal 590422 : CGTTGACGAACTGACGGCGAACACGATCACGATGCTGTTCTTCACGCACAGCGTGGTT : 590366 151 : LysIleIleTyrPheAlaValArgSerLysLeuPheTyrArgThrLeuGlyIleTrpA : 170 |||:!! !||||||||||||||||||||||||||||||||||||!!!|||||||||| LysLeuGlyTyrPheAlaValArgSerLysLeuPheTyrArgThrPheGlyIleTrpA 590365 : AAGCTCGGTTATTTCGCCGTCAGGAGCAAGTTGTTCTACAGAACCTTCGGTATTTGGA : 590306 171 : snAsnProAsnSerHisProLeuPheAlaGluSerAsnAlaArgTyrHisGlnIleAl : 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| snAsnProAsnSerHisProLeuPheAlaGluSerAsnAlaArgTyrHisGlnIleAl 590305 : ATAATCCGAACAGCCATCCTCTGTTCGCCGAGAGTAACGCGCGTTATCATCAGATTgc : 590249 190 : aIleLysLysMetArgIleLeuLeuLeuAlaValMetGlySerThrValLeuSerThr : 208 |:::|||||||||||||||||||||:!!||||||||||||!!!!:!||||||!!!..! aValLysLysMetArgIleLeuLeuMetAlaValMetGlyThrSerValLeuThrVal 590248 : tgtgaaaaaaatgagaatacTGTTGATGGCCGTCATGGGAACCAGTGTGCTCACCGTC : 590192 209 : LeuSerTrpThrIleLeuThrPheIleGluAspProValLysLysValThrAspProV : 228 :!!|||||||||! !:!!|||||||||! ||| !!||||||||||||..!||||||| IleSerTrpThrThrIleThrPheIleGlyAspSerValLysLysValValAspProV 590191 : ATTTCTTGGACCACAATCACGTTCATCGGTGATTCCGTGAAGAAGGTCGTCGATCCTG : 590132 229 : alThrAsnGluThrMetPheValGlu >>>> Target Intron 2 >>>> Ile : 237 |||||||||||||| ||||||||| 672 bp :!! alThrAsnGluThrSerPheValGlu++ ++Val 590131 : TTACCAACGAAACCTCTTTTGTCGAggt.........................agGTA : 589433 238 : ProArgLeuMetValArgSerTrpTyrProPheAspAlaSerHisGlyMetAlaHisV : 257 ||||||||||||||||||||||||||||||!:!||| !!||||||||||||||||||: ProArgLeuMetValArgSerTrpTyrProTyrAspProSerHisGlyMetAlaHisI 589432 : CCAAGATTGATGGTGCGTTCTTGGTATCCGTACGACCCCAGCCACGGGATGGCTCACA : 589373 258 : alMetValLeuIleTyrGlnPheTyrTrpLeuLeuPheSerMet--UnkGluArgGlu : 275 !!:!:..!|||:!!!:!|||.!!|||||||||:!!|||!!!!!:## ..!|||||| leLeuThrLeuValPheGlnLeuTyrTrpLeuIlePheThrIle##---ArgArgGlu 589372 : TTCTTACGTTAGTATTCCAACTTTACTGGCTGATATTTACCATAGC---AGACGCGAA : 589320 276 : SerPheArgArgValIleLeuPheValAlaProLeuArgLeuArgThrAsnSerThrP : 295 ||| !||||||!.!:!!|||||||||||||||||||||||| !!|||||||||.!!! SerProArgArgAlaValLeuPheValAlaProLeuArgLeu***ThrAsnSerAlaS 589319 : TCTCCTAGACGTGCTGTTCTGTTCGTGGCTCCTCTTCGCTTGTGAACAAATTCAGCAT : 589260 296 : heGluGluHisHisGluAlaPheAspGlyValGlnArgAspValGlyTyrArgCysAl : 314 !:!!|||:!!||||||.!! !||||||:!!||||||||| !|||:!! !!|||.! erLysGluTyrHisGluThrThrAspGlyIleGlnArgAspProGlyHisCysCysTh 589259 : CTAAAGAATATCATGAAACCACTGATGGAATTCAGCGCGACCCTGGACACTGTTGTAC : 589203 315 : aLysGlnTrp : 317 !||||||||| rLysGlnTrp 589202 : CAAACAGTGG : 589192 vulgar: gi|805808284|ref|XP_012146523.1| 64 317 . KQ414731.1 591043 589191 - 947 M 29 87 G 0 3 M 15 45 5 0 2 I 0 415 3 0 2 M 128 384 5 0 2 I 0 668 3 0 2 M 35 105 F 0 2 G 1 0 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414731.1 exonerate:protein2genome:local gene 589192 591043 947 - . gene_id 1 ; sequence gi|805808284|ref|XP_012146523.1| ; gene_orientation + KQ414731.1 exonerate:protein2genome:local cds 590909 591043 . - . KQ414731.1 exonerate:protein2genome:local exon 590909 591043 . - . insertions 3 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 590907 590908 . - . intron_id 1 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 590490 590908 . - . intron_id 1 KQ414731.1 exonerate:protein2genome:local splice3 590490 590491 . - . intron_id 0 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 590106 590489 . - . KQ414731.1 exonerate:protein2genome:local exon 590106 590489 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 590104 590105 . - . intron_id 2 ; splice_site "gt" KQ414731.1 exonerate:protein2genome:local intron 589434 590105 . - . intron_id 2 KQ414731.1 exonerate:protein2genome:local splice3 589434 589435 . - . intron_id 1 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 589192 589433 . - . KQ414731.1 exonerate:protein2genome:local exon 589192 589433 . - . insertions 0 ; deletions 1 ; frameshifts 2 KQ414731.1 exonerate:protein2genome:local similarity 589192 591043 947 - . alignment_id 1 ; Query gi|805808284|ref|XP_012146523.1| ; Align 591044 65 87 ; Align 590954 94 45 ; Align 590490 109 384 ; Align 589434 237 105 ; Align 589327 273 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805812281|ref|XP_012147625.1| PREDICTED: uncharacterized protein LOC100879426 [Megachile rotundata] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 397 Query range: 277 -> 399 Target range: 1306919 -> 1306553 278 : ValValGluAspValAsnThrLeuLeuAlaProIleIlePheLeuGlnLeuLeuTh : 296 ||||||.!.|||||||||...|||......||||||:!!|||:!!||||||||||| ValValAsnAspValAsnAsnLeuPheThrProIleValPheValGlnLeuLeuTh 1306919 : GTGGTGAATGatgtgaataatttatttactccCATCGTTTTCGTACAACTTCTTAC : 1306865 297 : rGlyGlyMetGlnIleCysLeuSerGlyPheAlaValLeuSerAsnAsnAlaGlyA : 315 |.!!|||!!: !||||||||||||||||||||||||!!!..!|||:!!||| !! rSerGlyIleValIleCysLeuSerGlyPheAlaValPheAspAsnAspAlaArgT 1306864 : AAGCGGAATAGTAATTTGTTTAAGTGGATTCGCGGTTTTCGATAACGACGCCCGTA : 1306808 316 : spAsnLeuIleLysPheIleAlaTyrLeuAlaSerValThrIleGlnIleValMet : 333 !:!!:!!:!:|||!:!:!!:!!||||||:!!|||:!! !:!:|||:!!:!!:!: hrAspIleLeuLysTyrValSerTyrLeuSerSerIleTrpLeuGlnLeuLeuLeu 1306807 : CCGATATTCTGAAATACGTATCTTATTTGTCCTCGATTTGGTTGCAACTTTTGTTA : 1306754 334 : TyrCysTrpProGlyGluIleLeuIleGlnGluSerGlnLysValGlyHisAlaAl : 352 !::|||! !|||||||||||||||:!!||||||||| !:!!:!!||||||!.!!. TrpCysLeuProGlyGluIleLeuValGlnGluSerLeuGluIleGlyHisValVa 1306753 : TGGTGTTTGCCCGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGACACGTAGT : 1306697 353 : aTyrLeuAsnValProTrpTyrGlnLeuProLeuPheHisArgArgGlnLeuLeuL : 371 !|||||||||||||||||||||.!.||||||! !.!!:!!!:!|||:!!|||! !: lTyrLeuAsnValProTrpTyrAsnLeuProProIleTyrGlnArgLysLeuCysM 1306696 : CTACTTAAATGTACCATGGTACAATTTGCCGCCAATTTACCAGAGAAAACTTTGCA : 1306640 372 : euIleIleIleLysSerGlnLysTyrCysCysIleSerAlaLeuThrPheLysSer : 389 !!!!:|||:!!!:!:!!|||:!!|||||| !!|||!!!||||||||||||::!!!! etMetIleLeuArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPheArgThr 1306639 : TGATGATCCTTAGGGCACAACAATATTGCAGCATCACGGCATTAACGTTTCGAACG : 1306586 390 : LeuSerSerHisThrLeuThrAsnIleSer : 399 ||||||! !||||||||||||!:!:!:||| LeuSerIleHisThrLeuThrSerValSer 1306585 : TTGTCTATTCACACGTTAACGAGCGTGAGT : 1306554 vulgar: gi|805812281|ref|XP_012147625.1| 277 399 . KQ414608.1 1306919 1306553 - 397 M 122 366 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1306554 1306919 397 - . gene_id 1 ; sequence gi|805812281|ref|XP_012147625.1| ; gene_orientation . KQ414608.1 exonerate:protein2genome:local cds 1306554 1306919 . - . KQ414608.1 exonerate:protein2genome:local exon 1306554 1306919 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1306554 1306919 397 - . alignment_id 1 ; Query gi|805812281|ref|XP_012147625.1| ; Align 1306920 278 366 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805812281|ref|XP_012147625.1| PREDICTED: uncharacterized protein LOC100879426 [Megachile rotundata] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 245 Query range: 62 -> 140 Target range: 1307139 -> 1306736 63 : IleGluAspGlyLeuValArgCysIleArgHisHisGlnArgLeuVal{As} >> : 79 :!!|||! ! !|||:!!!:!|||||||||||||||||||||:!!:!!{||} LeuGluValAspLeuIleLysCysIleArgHisHisGlnArgMetIle{As}++ 1307139 : TTAGAAGTGGACCTGATCAAATGCATTCGTCATCACCAACGAATGATA{AA}gt.. : 1307087 80 : >> Target Intron 1 >>>> {n}ValValAsnGluLeuAsnAspLeuLeuI : 89 169 bp {|}|||||||||!:::::|||:::|||... ++{n}ValValAsnAspValAsnAsnLeuPheT 1307086 : .......................ag{C}GTGGTGAATGatgtgaataatttattta : 1306892 90 : leProIleIlePheIleGlnLeuLeuThrSerGlyIleLysIleCysLeuSerGly : 107 ||||||:!!|||:!!||||||||||||||||||||| !||||||||||||||| hrProIleValPheValGlnLeuLeuThrSerGlyIleValIleCysLeuSerGly 1306891 : ctccCATCGTTTTCGTACAACTTCTTACAAGCGGAATAGTAATTTGTTTAAGTGGA : 1306838 108 : PheAlaValMetAsnAsnAsnThrAsnAlaGluLeuIleLysAlaValLeuTyrLe : 126 |||||||||.!.:!!|||:!!.!!..!.!!!!::!!:!:||| !|||! !||||| PheAlaValPheAspAsnAspAlaArgThrAspIleLeuLysTyrValSerTyrLe 1306837 : TTCGCGGTTTTCGATAACGACGCCCGTACCGATATTCTGAAATACGTATCTTATTT : 1306781 127 : uPheGlyMetThrThrGlnLeuLeuLeuTyrCysTyrProGly : 140 |! !..!!!: ! !||||||||||||!::|||! |||||| uSerSerIleTrpLeuGlnLeuLeuLeuTrpCysLeuProGly 1306780 : GTCCTCGATTTGGTTGCAACTTTTGTTATGGTGTTTGCCCGGT : 1306737 vulgar: gi|805812281|ref|XP_012147625.1| 62 140 . KQ414608.1 1307139 1306736 - 245 M 16 48 S 0 2 5 0 2 I 0 165 3 0 2 S 1 1 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1306737 1307139 245 - . gene_id 2 ; sequence gi|805812281|ref|XP_012147625.1| ; gene_orientation + KQ414608.1 exonerate:protein2genome:local cds 1307090 1307139 . - . KQ414608.1 exonerate:protein2genome:local exon 1307090 1307139 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1307088 1307089 . - . intron_id 1 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1306921 1307089 . - . intron_id 1 KQ414608.1 exonerate:protein2genome:local splice3 1306921 1306922 . - . intron_id 0 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1306737 1306920 . - . KQ414608.1 exonerate:protein2genome:local exon 1306737 1306920 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1306737 1307139 245 - . alignment_id 2 ; Query gi|805812281|ref|XP_012147625.1| ; Align 1307140 63 48 ; Align 1306920 80 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805812281|ref|XP_012147625.1| PREDICTED: uncharacterized protein LOC100879426 [Megachile rotundata] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 136 Query range: 1 -> 52 Target range: 1307307 -> 1307154 2 : PheThrValGlnThrValSerAlaIleTyrAsnSerAlaAlaValTrpGlyIleGl : 20 |||..! !||| !:!!:!!!.! !!:! :!!|||:!!..!! |||:!:!! PheValCysGlnLeuIleAlaValAlaPheValAlaAlaSerThrSerGlyLeuAs 1307307 : TTCGTTTGTCAACTGATTGCGGTTGCATTTGTGGCCGCCTCAACCTCAGGCTTGGA : 1307253 21 : uThrSerCysMetThrValIleLeuHisValSerGlyGlnPheLysLeuIleLysT : 39 : !||||||||||||..!|||||||||||||||||||||||||||||||||!..| pGlySerCysMetThrThrIleLeuHisValSerGlyGlnPheLysLeuIleSerT 1307252 : TGGATCATGTATGACCACGATTTTACACGTATCTGGACAATTCAAATTAATCAGTA : 1307196 40 : hrTrpIleAsnAsnIleGlyValLysIleLysAsnGluPro : 52 |||||:!!!:!!!.!!:||||||:!!! !!!. !:!!||| hrTrpValSerLysMetGlyValGluThrAsnValLysPro 1307195 : CGTGGGTCAGCAAAATGGGAGTAGAAACAAATGTCAAACCT : 1307155 vulgar: gi|805812281|ref|XP_012147625.1| 1 52 . KQ414608.1 1307307 1307154 - 136 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1307155 1307307 136 - . gene_id 3 ; sequence gi|805812281|ref|XP_012147625.1| ; gene_orientation . KQ414608.1 exonerate:protein2genome:local cds 1307155 1307307 . - . KQ414608.1 exonerate:protein2genome:local exon 1307155 1307307 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1307155 1307307 136 - . alignment_id 3 ; Query gi|805812281|ref|XP_012147625.1| ; Align 1307308 2 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759611|ref|XP_003699993.2| PREDICTED: uncharacterized protein LOC100882905 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1074 Query range: 239 -> 572 Target range: 1063023 -> 1061286 240 : IleLysThrAlaPheValMetIleAsnValIleLeuLeuThrValSerLeuValPh : 258 :!!::! !!.!|||..!!!::!!||||||||||||||| !:!!||||||:!!.! ValArgTrpGlyPheThrIleLeuAsnValIleLeuLeuLeuIleSerLeuIleLe 1063023 : GTTCGATGGGGTTTCACGATACTAAACGTGATATTACTACTGATATCCTTGATACT : 1062969 259 : eGlyIleTyrTyrTyrArgSerAspIleValIleLeuThrLysSerIleSerGluL : 277 ....|||:::::::::|||::!||||||...|||||| |||:::|||||||||: uAlaIlePheHisPheArgAsnAspIleThrIleLeuMetLysThrIleSerGluM 1062968 : cgcgatttttcactttcgaaaCGACATaactattttaatgaaaaccaTCTCCGAGA : 1062912 278 : euThrAlaLeuLeuGluValIleLeuAspLeuLeuPheCysLysMetAsnHisArg : 295 !!||||||||||||||||||:!::!!|||:!!:!!.!!|||||||||!!. ! ! etThrAlaLeuLeuGluValLeuMetAspMetIleLeuCysLysMetLysSerAla 1062911 : TGACTGCTCTGCTGGAGGTGTTGATGGACATGATTCTCTGCAAAATGAAGAGTGCA : 1062858 296 : ArgLeuGln >>>> Target Intron 1 >>>> GlyLeuIleGlyArgIle : 304 !:!|||||| 80 bp ! !|||:!!|||!:!:!! GlnLeuGln++ ++ValLeuValGlyLysVal 1062857 : CAGCTTCAggt.........................agGTGTTGGTAGGAAAAGTA : 1062751 305 : ArgMetTyrLeuGlnValAlaAspGluGlnGluAsnLysIleIleGlnSerTyrVa : 323 !:! !!:!:!!:!!||||||:!!:!!.!.|||! !||||||||||||.!!||||| LysAlaPheValLysValAlaAsnLysAsnGluIleLysIleIleGlnGlyTyrVa 1062750 : AAGGCGTTTGTAAAAGTGGCAAACAAGAACGAGATTAAGATAATACAAGGATACGT : 1062694 324 : lAspArgTyrLysLysLeuPheSerValIleAlaIleAlaTyrIleSerThrGlyI : 342 |||||||||||||::!!!!|||.!!..!||||||!!:!.!|||:!!! !||||||| lAspArgTyrLysArgPhePheGlyThrIleAlaMetGlyTyrValMetThrGlyI 1062693 : GGATCGATATAAACGATTTTTCGGAACAATAGCAATGGGATACGTAATGACTGGAA : 1062637 343 : leSerPheSerLeuAlaProLeuPheSerGlyGlnLysLeuProAlaAspGlyTrp : 360 ||!!!||||||||||||||||||||||||! !|||:!!|||||||||||||||||| leThrPheSerLeuAlaProLeuPheSerValGlnGluLeuProAlaAspGlyTrp 1062636 : TCACGTTCAGTTTGGCGCCTCTGTTTTCCGTACAAGAATTGCCAGCAGACGGATGG : 1062583 361 : IleProPheSerValGluPheValGlyIleTyrTrpValValTyrLeuValGlnVa : 379 ||||||||||||:!!:!! :!!|||:!!|||!! :!!||||||!!!|||||||| IleProPheSerIleLysProLeuGlyValTyrCysLeuValTyrPheValGlnVa 1062582 : ATCCCGTTTTCCATTAAACCACTGGGAGTATATTGCCTCGTATACTTTGTGCAGGT : 1062526 380 : lTyrCysIleLeuGlnThrAlaLeuCysIleGlyValAspPheMetIleThrThrL : 398 ||||||||||||||||||||||!!!||||||.!!|||||||||||||||.!! !| lTyrCysIleLeuGlnThrAlaPheCysIleSerValAspPheMetIleAlaLeuL 1062525 : TTACTGCATTCTCCAAACAGCGTTCTGCATTAGCGTGGATTTCATGATCGCTCTTC : 1062469 399 : euPheCysPheThrAlaAlaArgLeuAspIleLeuGlySerLysMetLysArgVal : 416 ||.!! !!|||:!!||||||!:!|||||||||||||||! !|||:!!::!!:!!.! euIleSerPheSerAlaAlaLysLeuAspIleLeuGlyMetLysLeuArgLysAla 1062468 : TAATCAGCTTCTCCGCGGCTAAATTAGACATACTGGGGATGAAACTGCGAAAAGCG : 1062415 417 : AsnArgTyrAspLeuLeuValSerCysValLysGluHisGlnGluIleLeu{Gl} : 434 ||| !!:!!|||:!!|||||||||||||||||||||||||||||||||:!!{||} AsnGlyHisAspValLeuValSerCysValLysGluHisGlnGluIleIle{Gl}+ 1062414 : AATGGCCACGACGTGCTGGTAAGCTGTGTCAAAGAACACCAAGAGATAATA{GG}g : 1062359 435 : >>>> Target Intron 2 >>>> {y}PheValAspAspThrLysAlaAlaV : 443 263 bp {|}||||||!!:|||! !|||.!!:!!| + ++{y}PheValGluAspIleLysThrSerV 1062358 : t.........................ag{A}TTTGTGGAGGATATTAAGACATCTG : 1062071 444 : alGlnAlaLeuLeuPheLysThrAsnIleThrMetGlySerAlaLeuIleCysGly : 461 ||:!:...|||||||||||||||||| !|||||||||||||||:!!||||||||| alGluThrLeuLeuPheLysThrAsnAlaThrMetGlySerAlaValIleCysGly 1062070 : TCGAgactttgttattcaaaacgaACGCCACTATGGGAAGCGCTGTGATATGCGGA : 1062017 462 : AlaPheProLeuIleTyr >>>> Target Intron 3 >>>> AsnGlnSer : 470 .!!||||||||||||||| 132 bp ||||||||| ThrPheProLeuIleTyr++ ++AsnGlnSer 1062016 : ACGTTCCCGTTGATTTACgt.........................agAATCAGTCG : 1061858 471 : LeuAlaValThrSerGlnPheLeuCysMetValValSerGlyCysGlyHisLeuTy : 489 |||.!!|||! !|||||||||||| !:!!:!!:!!||||||||||||!..||||| LeuThrValIleSerGlnPheLeuProLeuMetLeuSerGlyCysGlyArgLeuTy 1061857 : CTGACAGTAATCAGTCAGTTTCTTCCTTTGATGCTATCCGGCTGCGGACGACTATA : 1061801 490 : rValIleSerTrpProAlaAspAspLeuLysGluSer >>>> Target Intro : 502 ||||||||||||||||||||||||||||||||||||| 164 bp rValIleSerTrpProAlaAspAspLeuLysGluSer++ 1061800 : CGTCATCTCCTGGCCAGCAGATGATTTGAAAGAGAGCgt................. : 1061760 503 : n 4 >>>> SerLeuArgPheAlaThrSerValAsnAspIleGlnTrpIleArgG : 517 |||:!!! !||||||! !|||:!!! |||! !! !|||||| !!: ++SerIleThrPheAlaLysSerLeuIleAspSerProTrpIleGlyL 1061759 : ........agagTATAACGTTCGCGAAGTCTCTGATAGACAGTCCGTGGATAGGGA : 1061553 518 : lnProArgLysMetThrAsnLeuIleLeuIleMetMetGlnArgAsnArgLysPro : 535 !!||||||||||||||||||:!!:!::!!|||||||||||||||!:!!:!!:! ! ysProArgLysMetThrAsnIleValIleIleMetMetGlnArgSerGlnArgIle 1061552 : AACCACGAAAAATGACGAACATTGTGATAATTATGATGCAAAGAAGCCAAAGGATA : 1061499 536 : CysLeuIleThrMetGlyGlyLeuLeuProProLeuSerLeuGluTyrTyrAlaHi : 554 ! ||||||||||||||||||:!!|||||| !!:!!||||||||||||||||||:! LeuLeuIleThrMetGlyGlyIleLeuProAlaIleSerLeuGluTyrTyrAlaAs 1061498 : TTACTCATTACCATGGGTGGTATACTTCCTGCTATTTCCTTGGAATATTATGCAAA : 1061442 555 : s >>>> Target Intron 5 >>>> PheLeuThrSerIleSerSerTyrPh : 563 ! 99 bp |||||||||!!!:!!.!!|||||||| n++ ++PheLeuThrThrValGlySerTyrPh 1061441 : Cgt.........................agTTCCTAACTACAGTAGGCTCCTACTT : 1061316 564 : eMetAlaMetArgAlaValIleGluSer : 572 |||||||||||||.!!:!!||||||||| eMetAlaMetArgThrMetIleGluSer 1061315 : CATGGCAATGAGAACCATGATTGAGTCG : 1061287 vulgar: gi|805759611|ref|XP_003699993.2| 239 572 . KQ414618.1 1063023 1061286 - 1074 M 59 177 5 0 2 I 0 76 3 0 2 M 135 405 S 0 2 5 0 2 I 0 259 3 0 2 S 1 1 M 33 99 5 0 2 I 0 128 3 0 2 M 34 102 5 0 2 I 0 160 3 0 2 M 53 159 5 0 2 I 0 95 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1061287 1063023 1074 - . gene_id 1 ; sequence gi|805759611|ref|XP_003699993.2| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1062847 1063023 . - . KQ414618.1 exonerate:protein2genome:local exon 1062847 1063023 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1062845 1062846 . - . intron_id 1 ; splice_site "gt" KQ414618.1 exonerate:protein2genome:local intron 1062767 1062846 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1062767 1062768 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1062360 1062766 . - . KQ414618.1 exonerate:protein2genome:local exon 1062360 1062766 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1062358 1062359 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1062097 1062359 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1062097 1062098 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1061997 1062096 . - . KQ414618.1 exonerate:protein2genome:local exon 1061997 1062096 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1061995 1061996 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1061865 1061996 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1061865 1061866 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1061763 1061864 . - . KQ414618.1 exonerate:protein2genome:local exon 1061763 1061864 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1061761 1061762 . - . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1061599 1061762 . - . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 1061599 1061600 . - . intron_id 3 ; splice_site "ag" KQ414618.1 exonerate:protein2genome:local cds 1061440 1061598 . - . KQ414618.1 exonerate:protein2genome:local exon 1061440 1061598 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1061438 1061439 . - . intron_id 5 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1061341 1061439 . - . intron_id 5 KQ414618.1 exonerate:protein2genome:local splice3 1061341 1061342 . - . intron_id 4 ; splice_site "aG" KQ414618.1 exonerate:protein2genome:local cds 1061287 1061340 . - . KQ414618.1 exonerate:protein2genome:local exon 1061287 1061340 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1061287 1063023 1074 - . alignment_id 1 ; Query gi|805759611|ref|XP_003699993.2| ; Align 1063024 240 177 ; Align 1062767 299 405 ; Align 1062096 435 99 ; Align 1061865 468 102 ; Align 1061599 502 159 ; Align 1061341 555 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759611|ref|XP_003699993.2| PREDICTED: uncharacterized protein LOC100882905 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 376 Query range: 0 -> 134 Target range: 1029167 -> 1028765 1 : MetGluGlyMetGlnThrTyrCysLysAsnAlaLysValArgGluArgAlaIleLe : 19 !!:|||! !|||:!!! !! !|||:!!!..|||||| ! !||||||! !:!!!! IleGluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPh 1029167 : ATCGAAGAAATGAAGATTTGCTGTGAAACAGCGAAACCATACGAAAGAGACGTCTT : 1029113 20 : uGlnTrpTyrValAsnGlnPheSerThrPheTyrGlyValSerAlaThrTrpPheT : 38 !||| ! ||||||:!!:!!!:!||| !||||||! !..!!!!:!!:!!||||||| eGlnArgTyrValAspLysTyrSerLeuPheTyrValThrCysSerSerTrpPheT 1029112 : TCAACGATACGTCGATAAATACTCTTTATTTTACGTAACATGTTCGTCGTGGTTTT : 1029056 39 : yrThrThrAlaIleValValIleLeuGlyThrPhePheSerSerHisProPhePro : 56 || !||||||:!!:!!:!!:!!||||||!:! .!!! !||| !!||||||||| yrLeuThrAlaValIleMetValLeuGlySerArgIleIleSerAspProPhePro 1029055 : ACTTAACAGCAGTTATTATGGTTCTGGGAAGTCGGATTATATCTGATCCTTTTCCA : 1029002 57 : ThrAsnAlaValTyrProIleAlaValAspTyrGlnProLeuMetSerIleValPh : 75 ||||||||||||||||||.!! !!|||:!!!:!:!!||||||! ||||||:!!|| ThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePh 1029001 : ACCAACGCCGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGTATCATTTT : 1028945 76 : eLeuHisGlnSerValIleGlyLeuGlnPheSerAlaSerValCysValSerValL : 94 |:!!||||||||| !!:!!|||:!!|||! !:!!||| !..! !!:!!!:!|||| eMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisThrSerMetAsnValL 1028944 : TATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACACTAGTATGAATGTGC : 1028888 95 : euCysAlaLeuLeuLeuLeuPheAlaSerAlaArgPheGluIleLeuLysMetGlu : 112 || !|||||||||||||||||||||:!!||||||||||||||||||! !|||||| euThrAlaLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuMetMetGlu 1028887 : TAACTGCATTGTTATTACTATTTGCTGCAGCTCGTTTCGAGATACTGATGATGGAG : 1028834 113 : LeuArgGluValLysLysProSerGluLeuIleLysCysMetGluLysTyrTyrTh : 131 ||||||.!.|||!.. ! !..! !|||||||||||||||:!!||||||! ! LeuArgAsnValSerAspIleGluThrLeuIleLysCysMetLysLysTyrSerIl 1028833 : CTGAGGAATGTCAGTGACATTGAAACACTGATTAAATGTATGAAAAAGTATTCGAT : 1028777 132 : rValArgArg : 134 !||||||||| eValArgArg 1028776 : CGTACGGAGG : 1028766 vulgar: gi|805759611|ref|XP_003699993.2| 0 134 . KQ414618.1 1029167 1028765 - 376 M 134 402 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028766 1029167 376 - . gene_id 2 ; sequence gi|805759611|ref|XP_003699993.2| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028766 1029167 . - . KQ414618.1 exonerate:protein2genome:local exon 1028766 1029167 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028766 1029167 376 - . alignment_id 2 ; Query gi|805759611|ref|XP_003699993.2| ; Align 1029168 1 402 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759611|ref|XP_003699993.2| PREDICTED: uncharacterized protein LOC100882905 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 366 Query range: 0 -> 134 Target range: 1038334 -> 1037932 1 : MetGluGlyMetGlnThrTyrCysLysAsnAlaLysValArgGluArgAlaIleLe : 19 !!:|||! !|||:!!! !! !|||:!!!..|||||| ! !||||||! !:!!!! IleGluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPh 1038334 : ATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGACGTCTT : 1038280 20 : uGlnTrpTyrValAsnGlnPheSerThrPheTyrGlyValSerAlaThrTrpPheT : 38 !||| ! |||||||||:!! ||| |||||| ... !!:!!:!!||||||| eGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheT 1038279 : CCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTT : 1038223 39 : yrThrThrAlaIleValValIleLeuGlyThrPhePheSerSerHisProPhePro : 56 || !|||||||||:!!:!!:!!||||||!:!.!..!!! !||| !!||||||||| yrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPhePro 1038222 : ACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCA : 1038169 57 : ThrAsnAlaValTyrProIleAlaValAspTyrGlnProLeuMetSerIleValPh : 75 ||||||||||||||||||.!! !!|||:!!!:!:!!||||||! ||||||:!!|| ThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePh 1038168 : ACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTT : 1038112 76 : eLeuHisGlnSerValIleGlyLeuGlnPheSerAlaSerValCysValSerValL : 94 |:!!||||||||| !!:!!|||:!!|||! !:!!||| !!.! !!:!!!:!|||| eMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValL 1038111 : TATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGC : 1038055 95 : euCysAlaLeuLeuLeuLeuPheAlaSerAlaArgPheGluIleLeuLysMetGlu : 112 ||! !||||||||||||||||||.!!!!!|||||||||||||||||| !! !||| euSerAlaLeuLeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGlu 1038054 : TTTCTGCACTGTTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAG : 1038001 113 : LeuArgGluValLysLysProSerGluLeuIleLysCysMetGluLysTyrTyrTh : 131 ||||||.!.|||!!. ! !..! !||||||||| !!|||:!!||||||! || LeuArgAsnValAsnAspIleGluThrLeuIleLysSerMetLysLysTyrSerTh 1038000 : TTGAGGAATGTCAATGATATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGAC : 1037944 132 : rValArgArg : 134 |||||||||| rValArgArg 1037943 : TGTGCGGAGG : 1037933 vulgar: gi|805759611|ref|XP_003699993.2| 0 134 . KQ414618.1 1038334 1037932 - 366 M 134 402 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037933 1038334 366 - . gene_id 3 ; sequence gi|805759611|ref|XP_003699993.2| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1037933 1038334 . - . KQ414618.1 exonerate:protein2genome:local exon 1037933 1038334 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037933 1038334 366 - . alignment_id 3 ; Query gi|805759611|ref|XP_003699993.2| ; Align 1038335 1 402 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759611|ref|XP_003699993.2| PREDICTED: uncharacterized protein LOC100882905 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 264 Query range: 3 -> 134 Target range: 1058125 -> 1057732 4 : MetGlnThrTyrCysLysAsnAlaLysValArgGluArgAlaIleLeuGlnTrpTy : 22 |||:!!!.!!:!|||!:! !!|||! :::|||:::...:::|||||| ! || MetGluAsnPheCysArgTyrAlaThrSerLysGluLysValValLeuGlnArgTy 1058125 : ATGGAGAATTTCTGCAGATACGCCACCtcgaaggaaaaagttgtcCTGCAACGATA : 1058071 23 : rValAsnGlnPheSerThrPheTyrGlyValSerAlaThrTrpPheTyrThrThrA : 41 ||||:!!::!!:!!.! !|||:!!|||:!!! ! ! !|||! !!:! !|||. rValAspArgTyrLysTyrPheHisGlyIleTyrIleLeuTrpCysPheLeuThrT 1058070 : CGTGGACAGATACAAATACTTTCATGGGATTTATATATTATGGTGCTTCCTCACGA : 1058014 42 : laIleValValIleLeuGlyThrPhePheSerSerHisProPheProThrAsnAla : 59 !!||| !!|||||| !||| !!!!.!:!||| !!!!. !!|||||||||:!!||| hrIlePheValIleSerGlyProLeuTyrSerProGlnThrPheProThrHisAla 1058013 : CCATCTTCGTCATAAGTGGTCCATTGTACTCACCACAGACGTTCCCCACTCATGCG : 1057960 60 : ValTyrProIleAlaValAspTyrGlnProLeuMetSerIleValPheLeuHisGl : 78 :!!||||||.!! !|||!!::!! !! !!!!! :::::::::...||||| IleTyrProPheGlnValGluHisThrLeuPheLysIleValIleTyrPheHisGl 1057959 : ATATATCCTTTCCAAGTGGAACATACACTGTTCAagattgttatttatttccatCA : 1057903 79 : nSerValIleGlyLeuGlnPheSerAlaSerValCysValSerValLeuCysAlaL : 97 ||||:!!:!!|||!!!||| ||||||.!!:!!..!:!!..!..!! ! !|||| nSerLeuValGlyPheGlnAlaSerAlaGlyMetAlaIleAspThrGlnIleAlaL 1057902 : GTCGTTAGTTGGTTTTCAGGCGTCCGCTGGTATGGCCATCGACACTCAAATTGCTC : 1057846 98 : euLeuLeuLeuPheAlaSerAlaArgPheGluIleLeuLysMetGluLeuArgGlu : 115 ||||||||! !!:!|||:!!||||||||||||:!!||| !! |||:!!|||.!. euLeuLeuArgTyrAlaAlaAlaArgPheGluLeuLeuGlyAsnGluMetArgAsn 1057845 : TTCTTCTGCGATACGCGGCTGCCAGGTTCGAGCTATTGGGAAACGAGATGCGAAAT : 1057792 116 : ValLysLysProSerGluLeuIleLysCysMetGluLysTyrTyrThrValArgAr : 134 !.!!!.! ! !!!!|||!!!! ! |||!!:||||||:!! ! !:!!! !|| AlaAsnThrHisCysGluPheAsnAlaCysIleGluLysHisSerGluLeuLeuAr 1057791 : GCAAATACTCACTGTGAATTCAATGCCTGCATAGAGAAGCACAGTGAACTTCTCAG : 1057735 135 : g : 134 | g 1057734 : g : 1057733 vulgar: gi|805759611|ref|XP_003699993.2| 3 134 . KQ414618.1 1058125 1057732 - 264 M 131 393 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057733 1058125 264 - . gene_id 4 ; sequence gi|805759611|ref|XP_003699993.2| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1057733 1058125 . - . KQ414618.1 exonerate:protein2genome:local exon 1057733 1058125 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057733 1058125 264 - . alignment_id 4 ; Query gi|805759611|ref|XP_003699993.2| ; Align 1058126 4 393 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759611|ref|XP_003699993.2| PREDICTED: uncharacterized protein LOC100882905 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 261 Query range: 3 -> 134 Target range: 1052935 -> 1052542 4 : MetGlnThrTyrCysLysAsnAlaLysValArgGluArgAlaIleLeuGlnTrpTy : 22 ||| |||||| !|||.!.|||:!! ! !||||||! !||||||!!. || MetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLeuHisAsnTy 1052935 : ATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCACAACTA : 1052881 23 : rValAsnGlnPheSerThrPheTyrGlyValSerAlaThrTrpPheTyrThrThrA : 41 |:!!.!.:!!! !!.! !|||||||||! !||| !! !||| ||| ! !| rIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrTyrLeuCysA 1052880 : TATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACATACCTCTGTG : 1052824 42 : laIleValValIleLeuGlyThrPhePheSerSerHisProPheProThrAsnAla : 59 ||! ! ! !!:!!|||||| !! !! !! ! !!:!!|||||||||!:!!:!||| laThrCysPheValLeuGlyProValValLeuProAsnProPheProSerSerAla 1052823 : CAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGCAGTGCA : 1052770 60 : ValTyrProIleAlaValAspTyrGlnProLeuMetSerIleValPheLeuHisGl : 78 ! !||||||.!! !|||:!! ! !|||:!!! :!!||||||!:!|||||||| GluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyrLeuHisGl 1052769 : GAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTACCTGCACCA : 1052713 79 : nSerValIleGlyLeuGlnPheSerAlaSerValCysValSerValLeuCysAlaL : 97 |||| !!|||.!!!!!|||!:!|||||| !:!!|||||||||:!!!!! ! |||| nSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePheGlyAlaL 1052712 : ATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTTCGGAGCTC : 1052656 98 : euLeuLeuLeuPheAlaSerAlaArgPheGluIleLeuLysMetGluLeuArgGlu : 115 ||||||||! !.!!.!!:!!|||||||||.!. !|||! :!!|||:!!!:!:!! euLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluValGlnGln 1052655 : TTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTTCAACAA : 1052602 116 : ValLysLysProSerGluLeuIleLysCysMetGluLysTyrTyrThrValArgAr : 134 !..!!.. ! ! !||||||! |||:!::!!||| ! !:!!||||| SerSerSerIleHisMetLeuIleIleCysValLysLysGlnLeuLeuLeuArgAr 1052601 : AGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCTACTACTGAGGAG : 1052545 135 : g : 134 | g 1052544 : G : 1052543 vulgar: gi|805759611|ref|XP_003699993.2| 3 134 . KQ414618.1 1052935 1052542 - 261 M 131 393 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1052543 1052935 261 - . gene_id 5 ; sequence gi|805759611|ref|XP_003699993.2| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1052543 1052935 . - . KQ414618.1 exonerate:protein2genome:local exon 1052543 1052935 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1052543 1052935 261 - . alignment_id 5 ; Query gi|805759611|ref|XP_003699993.2| ; Align 1052936 4 393 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759611|ref|XP_003699993.2| PREDICTED: uncharacterized protein LOC100882905 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 172 Query range: 306 -> 433 Target range: 1058116 -> 1057735 307 : TyrLeuGlnValAlaAspGluGlnGluAsnLysIleIleGlnSerTyrValAspAr : 325 !:!! !::! !||| !...:::|||... ::::!:||| !!||||||||||| PheCysArgTyrAlaThrSerLysGluLysValValLeuGlnArgTyrValAspAr 1058116 : TTCTGCAGATACGCCACCtcgaaggaaaaagttgtcCTGCAACGATACGTGGACAG : 1058062 326 : gTyrLysLysLeuPheSerValIleAlaIleAlaTyrIleSerThrGlyIleSerP : 344 ||||||| ! !!! !.!!:!! ! !:!! !! !.!! !||| !|||! ! gTyrLysTyrPheHisGlyIleTyrIleLeuTrpCysPheLeuThrThrIlePheV 1058061 : ATACAAATACTTTCATGGGATTTATATATTATGGTGCTTCCTCACGACCATCTTCG : 1058005 345 : heSerLeuAlaProLeuPheSerGlyGlnLysLeuProAlaAspGlyTrpIlePro : 362 !!! ! !!.!||||||!:!||| !|||! !!!!|||.!! !!!.! !||| alIleSerGlyProLeuTyrSerProGlnThrPheProThrHisAlaIleTyrPro 1058004 : TCATAAGTGGTCCATTGTACTCACCACAGACGTTCCCCACTCATGCGATATATCCT : 1057951 363 : PheSerValGluPheValGlyIleTyrTrpValValTyrLeuValGlnValTyrCy : 381 |||..!|||||| !..! !.!! |||:::|||... ||| !! PheGlnValGluHisThrLeuPheLysIleValIleTyrPheHisGlnSerLeuVa 1057950 : TTCCAAGTGGAACATACACTGTTCAagattgttatttatttccatCAGTCGTTAGT : 1057894 382 : sIleLeuGlnThrAlaLeuCysIleGlyValAspPheMetIleThrThrLeuPheC : 400 ! !!!!|||.!!:!! ! !!!!:!.!:!!||| !...|||.!! !|||.!. lGlyPheGlnAlaSerAlaGlyMetAlaIleAspThrGlnIleAlaLeuLeuLeuA 1057893 : TGGTTTTCAGGCGTCCGCTGGTATGGCCATCGACACTCAAATTGCTCTTCTTCTGC : 1057837 401 : ysPheThrAlaAlaArgLeuAspIleLeuGlySerLysMetLysArgValAsnArg : 418 ! !:!.!!|||||||||!!!!!::!!||||||!:!:!!|||::!!.!!.!|||! ! rgTyrAlaAlaAlaArgPheGluLeuLeuGlyAsnGluMetArgAsnAlaAsnThr 1057836 : GATACGCGGCTGCCAGGTTCGAGCTATTGGGAAACGAGATGCGAAATGCAAATACT : 1057783 419 : TyrAspLeuLeuValSerCysValLysGluHisGlnGluIleLeu : 433 :!! ! !!!! !:!!|||:!!:!!:!!|||...|||:!!||| HisCysGluPheAsnAlaCysIleGluLysHisSerGluLeuLeu 1057782 : CACTGTGAATTCAATGCCTGCATAGAGAAGCACAGTGAACTTCTC : 1057736 vulgar: gi|805759611|ref|XP_003699993.2| 306 433 . KQ414618.1 1058116 1057735 - 172 M 127 381 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057736 1058116 172 - . gene_id 6 ; sequence gi|805759611|ref|XP_003699993.2| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1057736 1058116 . - . KQ414618.1 exonerate:protein2genome:local exon 1057736 1058116 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057736 1058116 172 - . alignment_id 6 ; Query gi|805759611|ref|XP_003699993.2| ; Align 1058117 307 381 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759611|ref|XP_003699993.2| PREDICTED: uncharacterized protein LOC100882905 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 168 -> 203 Target range: 1028385 -> 1028280 169 : GlnProPheThrSerArgCysGlnTyrLeuSerIleValTrpThrAlaLeuValGl : 187 |||||||||.!! !!:!..!|||!:!|||!!!:!: ! ! |||||||||:!!|| GlnProPheAlaValLysAlaGlnPheLeuThrValSerGlyThrAlaLeuLeuGl 1028385 : CAACCGTTCGCTGTGAAAGCTCAGTTTCTTACTGTGAGTGGAACCGCTTTGCTGGA : 1028331 188 : uValPheValCysAlaTrpProAlaAspHisLeuLeuAspIleLysSer : 203 ||||.!!:!!|||:!! |||||||||||||||:!!|||!!: !||| uValLeuMetCysSerLeuProAlaAspHisLeuIleAspMetValSer 1028330 : AGTGCTTATGTGTTCACTACCAGCTGACCATTTGATAGATATGGTAAGT : 1028281 vulgar: gi|805759611|ref|XP_003699993.2| 168 203 . KQ414618.1 1028385 1028280 - 102 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028281 1028385 102 - . gene_id 7 ; sequence gi|805759611|ref|XP_003699993.2| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028281 1028385 . - . KQ414618.1 exonerate:protein2genome:local exon 1028281 1028385 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028281 1028385 102 - . alignment_id 7 ; Query gi|805759611|ref|XP_003699993.2| ; Align 1028386 169 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759611|ref|XP_003699993.2| PREDICTED: uncharacterized protein LOC100882905 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 168 -> 208 Target range: 1036024 -> 1035904 169 : GlnProPheThrSerArgCysGlnTyrLeuSerIleValTrpThrAlaLeuValGl : 187 ||||||!!..!! !!:! !|||!:!|||!!!!!: ! ! |||||||||:!!|| GlnProLeuAlaValLysValGlnPheLeuThrMetSerGlyThrAlaLeuLeuGl 1036024 : CAACCGTTGGCTGTTAAAGTTCAATTTCTTACTATGAGTGGAACCGCGTTGCTGGA : 1035970 188 : uValPheValCysAlaTrpProAlaAspHisLeuLeuAspIleLysSerGlyMetL : 206 |||||||:!!|||:!! |||||||||||||||:!!|||!!: !|||! !.!. uValPheMetCysSerLeuProAlaAspHisLeuIleAspMetValSerAspPheL 1035969 : AGTGTTTATGTGTTCACTACCAGCTGACCATTTGATAGATATGGTAAGTGATTTTT : 1035913 207 : ysLeuIle : 208 !:!!:!! euIleLeu 1035912 : TGATACTA : 1035905 vulgar: gi|805759611|ref|XP_003699993.2| 168 208 . KQ414618.1 1036024 1035904 - 100 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1035905 1036024 100 - . gene_id 8 ; sequence gi|805759611|ref|XP_003699993.2| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1035905 1036024 . - . KQ414618.1 exonerate:protein2genome:local exon 1035905 1036024 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1035905 1036024 100 - . alignment_id 8 ; Query gi|805759611|ref|XP_003699993.2| ; Align 1036025 169 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819498|ref|XP_012149882.1| PREDICTED: uncharacterized protein LOC100884046 [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 390 Query range: 208 -> 333 Target range: 1408216 -> 1409531 209 : ValLeuHisValGlyCysGlnIleAspIleLeuCysGlnThrIleIleAspValPr : 227 |||||||||:!!||||||||||||||||||:!!|||||||||:!!! !!:||||| ValLeuHisLeuGlyCysGlnIleAspIleMetCysGlnThrLeuLysGluValPr 1408217 : GTGCTTCATCTAGGTTGTCAAATCGATATTATGTGCCAGACATTAAAGGAGGTTCC : 1408271 228 : oLeuArgAspLysLysGlnLeuGluPhePheIleSerArgHisGlnAspIleIleV : 246 |! !!:!:!!|||! ||||||..!|||||||||||||||||||||.!.||||||: oTyrLysAsnLysThrGlnLeuArgPhePheIleSerArgHisGlnGlnIleIleI 1408272 : TTATAAGAATAAAACTCAACTGAGATTCTTCATCAGCAGACATCAACAGATCATCA : 1408328 247 : alPheThrGluLysIleGluGlnPhePheThrTyrMetAlaLeuSerGlnLeuLeu : 264 !!|||.!!|||!:!||||||:!!.!.|||||||||:!:|||||||||||||||||| lePheAlaGluArgIleGluLysLeuPheThrTyrLeuAlaLeuSerGlnLeuLeu 1408329 : TATTTGCAGAGAGAATAGAAAAACTGTTTACGTATCTAGCACTTAGTCAACTTCTC : 1408382 265 : SerAsnIleLeuIleThrCysCysLeuGlyPheLeuIleIleMet >>>> Targ : 280 ||||||! !|||||||||||||||:!!|||!:!:!!||| !.!. SerAsnThrLeuIleThrCysCysValGlyTyrIleIleAlaPhe++ 1408383 : TCGAATACCCTAATTACTTGCTGCGTGGGTTATATTATCGCATTTgt......... : 1408432 281 : et Intron 1 >>>> SerIleSerGlyAspAlaGluLeuSerValPhePheLy : 292 92 bp :!!:!!..!..!:!! !! !!!!!.!:!!!!..!!|| ++AlaLeuGlnAsnAsnAsnGlyPheLysMetLeuIleLy 1408433 : ................agGCACTACAAAATAATAATGGATTTAAAATGTTGATCAA : 1408558 293 : sSerValSerPheTyrIleAlaLeuTrpIleGluAlaTyrValTyrCysPheAlaG : 311 |! !||| !!:!|||!!:|||:!!!! !||||||!:!:!!||||||||||||| sPheValValTyrTyrMetAlaValCysSerGluAlaPheIleTyrCysPheAlaG 1408559 : ATTTGTTGTATATTACATGGCTGTGTGCTCAGAAGCGTTCATATACTGCTTTGCTG : 1408615 312 : lyGluTyrLeuAsnThrLys >>>> Target Intron 2 >>>> IleLeuL : 320 ||||||||||||||! !||| 848 bp |||:!!| lyGluTyrLeuAsnIleLys++ ++IleMetL 1408616 : GAGAGTACCTTAATATCAAGgt.........................agattATGA : 1409490 321 : ysAlaSerAlaSerTyrMetSerValLeuLeuAlaMetSer : 333 |||||||||||||||||!!:||||||||||||||||||||| ysAlaSerAlaSerTyrIleSerValLeuLeuAlaMetSer 1409491 : AAGCTTCTGCATCGTATATATCCGTATTGCTCGCAATGagt : 1409531 vulgar: gi|805819498|ref|XP_012149882.1| 208 333 . KQ414716.1 1408216 1409531 + 390 M 71 213 5 0 2 I 0 88 3 0 2 M 38 114 5 0 2 I 0 844 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408217 1409531 390 + . gene_id 1 ; sequence gi|805819498|ref|XP_012149882.1| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408217 1408429 . + . KQ414716.1 exonerate:protein2genome:local exon 1408217 1408429 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408430 1408431 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408430 1408521 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1408520 1408521 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1408522 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408522 1408635 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408636 1408637 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408636 1409483 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1409482 1409483 . + . intron_id 1 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409484 1409531 . + . KQ414716.1 exonerate:protein2genome:local exon 1409484 1409531 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408217 1409531 390 + . alignment_id 1 ; Query gi|805819498|ref|XP_012149882.1| ; Align 1408217 209 213 ; Align 1408522 280 114 ; Align 1409484 318 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819498|ref|XP_012149882.1| PREDICTED: uncharacterized protein LOC100884046 [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 376 Query range: 208 -> 332 Target range: 1401021 -> 1402805 209 : ValLeuHisValGlyCysGlnIleAspIleLeuCysGlnThrIleIleAspValPr : 227 |||||||||:!!||||||||||||||||||:!!|||!:!!.!:!::!!|||||| ! ValLeuHisLeuGlyCysGlnIleAspIleMetCysArgAsnLeuLeuAspValSe 1401022 : GTACTTCATCTAGGATGTCAAATCGACATCATGTGCCGAAATTTGCTAGACGTTTC : 1401076 228 : oLeuArgAspLysLysGlnLeuGluPhePheIleSerArgHisGlnAspIleIleV : 246 !!!!!:!||| ||||||::::::|||||||||::!|||||||||!!:||||||| rPheLysAspGlyLysGlnIleLysPhePheIleAsnArgHisGlnGluIleIleV 1401077 : CTTCAAAGACggaaaacaaataaaattcttcattaACAGACATCAGGAAATTATTG : 1401133 247 : alPheThrGluLysIleGluGlnPhePheThrTyrMetAlaLeuSerGlnLeuLeu : 264 |||||.!!|||!:!||||||:!!.!!|||||||||||||||||||||||||||:!! alPheAlaGluArgIleGluLysLeuPheThrTyrMetAlaLeuSerGlnLeuVal 1401134 : TTTTTGCAGAAAGAATTGAGAAACTTTTTACATACATGGCTCTCAGTCAACTTGTG : 1401187 265 : SerAsnIleLeuIleThrCysCysLeuGlyPheLeuIleIleMet >>>> Targ : 280 ||||||! :!!|||! !||||||:!!|||||||||:!!:!!!!: SerAsnThrIleIleIleCysCysValGlyPheLeuValValIle++ 1401188 : TCCAATACGATAATTATATGTTGCGTAGGATTTCTCGTTGTAATTgt......... : 1401237 281 : et Intron 1 >>>> SerIleSerGlyAspAlaGluLeuSerValPhePheLy : 292 83 bp :!!:!! ! !||| !! !:!! !!:!!!!..!!|| ++AlaValHisIleAspAsnGlyValProLeuLeuLeuLy 1401238 : ................aggCAGTACATATCGACAATGGAGTTCCTCTGTTACTCAa : 1401354 293 : sSerValSerPheTyrIleAlaLeuTrpIleGluAlaTyrValTyrCysPheAlaG : 311 ||||::: ||||||:::!.!:!!!! :!!||||||!:!:!!|||||||||!.!| sSerLeuLeuPheTyrValValIleCysLeuGluAlaPheIleTyrCysPheValG 1401355 : atctcttttattttatgtgGTTATTTGTTTAGAAGCGTTTATATACTGCTTTGTCG : 1401411 312 : lyGluTyrLeuAsnThrLys >>>> Target Intron 2 >>>> IleLeuL : 320 |||||||||||!:!! !||| 1329 bp |||:!!| lyGluTyrLeuSerIleLys++ ++IleMetL 1401412 : GAGAATATCTCAGTATCAAGgt.........................agATCATGA : 1402767 321 : ysAlaSerAlaSerTyrMetSerValLeuLeuAlaMet : 332 ||!.!||||||||||||!!:|||||||||||||||:!! ysValSerAlaSerTyrIleSerValLeuLeuAlaVal 1402768 : AAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTG : 1402805 vulgar: gi|805819498|ref|XP_012149882.1| 208 332 . KQ414716.1 1401021 1402805 + 376 M 71 213 5 0 2 I 0 79 3 0 2 M 38 114 5 0 2 I 0 1325 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401022 1402805 376 + . gene_id 2 ; sequence gi|805819498|ref|XP_012149882.1| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401022 1401234 . + . KQ414716.1 exonerate:protein2genome:local exon 1401022 1401234 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401235 1401236 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401235 1401317 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1401316 1401317 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1401318 1401431 . + . KQ414716.1 exonerate:protein2genome:local exon 1401318 1401431 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401432 1401433 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401432 1402760 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1402759 1402760 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402761 1402805 . + . KQ414716.1 exonerate:protein2genome:local exon 1402761 1402805 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401022 1402805 376 + . alignment_id 2 ; Query gi|805819498|ref|XP_012149882.1| ; Align 1401022 209 213 ; Align 1401318 280 114 ; Align 1402761 318 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819498|ref|XP_012149882.1| PREDICTED: uncharacterized protein LOC100884046 [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 259 Query range: 2 -> 74 Target range: 1408216 -> 1408432 3 : ValLeuHisValGlyTyrGlnIleAspIleMetCysGlnThrValThrAspMetPr : 21 |||||||||:!!|||! !||||||||||||||||||||||||:!!! !!!::!:|| ValLeuHisLeuGlyCysGlnIleAspIleMetCysGlnThrLeuLysGluValPr 1408217 : GTGCTTCATCTAGGTTGTCAAATCGATATTATGTGCCAGACATTAAAGGAGGTTCC : 1408271 22 : oIleIleAspLysGluGlnLeuArgPhePheIleLysArgHisGlnAspIleIleI : 40 | !! :!!||| ||||||||||||||||||!..|||||||||.!.||||||| oTyrLysAsnLysThrGlnLeuArgPhePheIleSerArgHisGlnGlnIleIleI 1408272 : TTATAAGAATAAAACTCAACTGAGATTCTTCATCAGCAGACATCAACAGATCATCA : 1408328 41 : lePheThrGluLysIleGluLysTyrPheThrTyrIleAlaLeuSerGlnLeuPhe : 58 |||||.!!|||!:!||||||||| |||||||||:!!|||||||||||||||.!! lePheAlaGluArgIleGluLysLeuPheThrTyrLeuAlaLeuSerGlnLeuLeu 1408329 : TATTTGCAGAGAGAATAGAAAAACTGTTTACGTATCTAGCACTTAGTCAACTTCTC : 1408382 59 : ThrAsnThrLeuValThrCysCysLeuGlyValMetIleValIleVal : 74 :!!|||||||||:!!|||||||||:!!||| !!!:|||!.!.!!||| SerAsnThrLeuIleThrCysCysValGlyTyrIleIleAlaPheVal 1408383 : TCGAATACCCTAATTACTTGCTGCGTGGGTTATATTATCGCATTTGTA : 1408432 vulgar: gi|805819498|ref|XP_012149882.1| 2 74 . KQ414716.1 1408216 1408432 + 259 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408217 1408432 259 + . gene_id 3 ; sequence gi|805819498|ref|XP_012149882.1| ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1408217 1408432 . + . KQ414716.1 exonerate:protein2genome:local exon 1408217 1408432 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408217 1408432 259 + . alignment_id 3 ; Query gi|805819498|ref|XP_012149882.1| ; Align 1408217 3 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819498|ref|XP_012149882.1| PREDICTED: uncharacterized protein LOC100884046 [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 241 Query range: 2 -> 74 Target range: 1401021 -> 1401237 3 : ValLeuHisValGlyTyrGlnIleAspIleMetCysGlnThrValThrAspMetPr : 21 |||||||||:!!|||! !||||||||||||||||||!:!!.!:!! !|||:!: ! ValLeuHisLeuGlyCysGlnIleAspIleMetCysArgAsnLeuLeuAspValSe 1401022 : GTACTTCATCTAGGATGTCAAATCGACATCATGTGCCGAAATTTGCTAGACGTTTC : 1401076 22 : oIleIleAspLysGluGlnLeuArgPhePheIleLysArgHisGlnAspIleIleI : 40 !.!!! !||| :::|||::::::|||||||||.!.|||||||||!!:||||||: rPheLysAspGlyLysGlnIleLysPhePheIleAsnArgHisGlnGluIleIleV 1401077 : CTTCAAAGACggaaaacaaataaaattcttcattaACAGACATCAGGAAATTATTG : 1401133 41 : lePheThrGluLysIleGluLysTyrPheThrTyrIleAlaLeuSerGlnLeuPhe : 58 !!|||.!!|||!:!||||||||| !|||||||||!!:||||||||||||||| ! alPheAlaGluArgIleGluLysLeuPheThrTyrMetAlaLeuSerGlnLeuVal 1401134 : TTTTTGCAGAAAGAATTGAGAAACTTTTTACATACATGGCTCTCAGTCAACTTGTG : 1401187 59 : ThrAsnThrLeuValThrCysCysLeuGlyValMetIleValIleVal : 74 :!!||||||:!!:!!! !||||||:!!||| !!:!::!!||||||||| SerAsnThrIleIleIleCysCysValGlyPheLeuValValIleVal 1401188 : TCCAATACGATAATTATATGTTGCGTAGGATTTCTCGTTGTAATTGTA : 1401237 vulgar: gi|805819498|ref|XP_012149882.1| 2 74 . KQ414716.1 1401021 1401237 + 241 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401022 1401237 241 + . gene_id 4 ; sequence gi|805819498|ref|XP_012149882.1| ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1401022 1401237 . + . KQ414716.1 exonerate:protein2genome:local exon 1401022 1401237 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401022 1401237 241 + . alignment_id 4 ; Query gi|805819498|ref|XP_012149882.1| ; Align 1401022 3 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819498|ref|XP_012149882.1| PREDICTED: uncharacterized protein LOC100884046 [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 240 Query range: 236 -> 332 Target range: 1394263 -> 1395911 237 : PheIleSerArgHisGlnAspIleIleValPheThrGluLysIleGluGlnPhePh : 255 !!.||| !||||||!!. ||||||:!! !:!!!!:...||||||....!!|| LeuIleHisArgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPh 1394264 : TTAATTCACAGACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTT : 1394318 256 : eThrTyrMetAlaLeuSerGlnLeuLeuSerAsnIleLeuIleThrCysCysLeuG : 274 |:!!|||!!:||||||! !|||! !|||!!!|||! |||:!!! !||||||:!!| eSerTyrIleAlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleG 1394319 : TTCATACATTGCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAG : 1394375 275 : lyPheLeuIleIleMet >>>> Target Intron 1 >>>> SerIleSerG : 283 |||||||||||:!!!!: 464 bp :!!.!!!:! lyPheLeuIleValIle++ ++AlaPheAsnT 1394376 : GATTCTTAATAGTAATTgt.........................agGCATTTAATA : 1394866 284 : lyAspAlaGluLeuSerValPhePheLysSerValSerPheTyrIleAlaLeuTrp : 301 !|||......:::......|||...|||:::::! !||||||||||||:!! hrAspGlyAsnIleLysThrPheIleLysThrLeuLeuPheTyrIleAlaIleThr 1394867 : CAGatggaaatataaaaacatttataaaaacattACTCTTTTACATCGCTATCACT : 1394920 302 : IleGluAlaTyrValTyrCysPheAlaGlyGluTyrLeuAsnThrLys >>>> T : 318 !!:||||||!:!:!!!:!! !||||||||||||||||||!:!!.!||| MetGluAlaPheIlePheSerPheAlaGlyGluTyrLeuSerAsnLys++ 1394921 : ATGGAAGCATTCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAAgt...... : 1394973 319 : arget Intron 2 >>>> IleLeuLysAlaSerAlaSerTyrMetSerValLe : 329 896 bp ||||||||||||||||||||||||!!:|||||||| ++IleLeuLysAlaSerAlaSerTyrIleSerValLe 1394974 : ...................agatcTTAAAGGCTTCTGCATCGTACATATCTGTACT : 1395900 330 : uLeuAlaMet : 332 |! !|||||| uTyrAlaMet 1395901 : GTATGCGATG : 1395911 vulgar: gi|805819498|ref|XP_012149882.1| 236 332 . KQ414716.1 1394263 1395911 + 240 M 43 129 5 0 2 I 0 460 3 0 2 M 38 114 5 0 2 I 0 892 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394264 1395911 240 + . gene_id 5 ; sequence gi|805819498|ref|XP_012149882.1| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394264 1394392 . + . KQ414716.1 exonerate:protein2genome:local exon 1394264 1394392 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394393 1394394 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394393 1394856 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394855 1394856 . + . intron_id 0 ; splice_site "aG" KQ414716.1 exonerate:protein2genome:local cds 1394857 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394857 1394970 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394971 1394972 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394971 1395866 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1395865 1395866 . + . intron_id 1 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1395867 1395911 . + . KQ414716.1 exonerate:protein2genome:local exon 1395867 1395911 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394264 1395911 240 + . alignment_id 5 ; Query gi|805819498|ref|XP_012149882.1| ; Align 1394264 237 129 ; Align 1394857 280 114 ; Align 1395867 318 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819498|ref|XP_012149882.1| PREDICTED: uncharacterized protein LOC100884046 [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 238 Query range: 92 -> 209 Target range: 1405743 -> 1406100 93 : AsnIleTrpValGluAlaIleLeuCysAspMetLeuSerThrIleGluGluGluCy : 111 ...||| ...::::!!|||! !|||!!::!!||||||!!:||||||!!:|| LysIleIlePheHisSerLeuLeuTyrAspIleIleSerThrMetGluGluAspCy 1405744 : aaaataatatttcacagtCTACTTTACGACATTATCTCGACCATGGAAGAAGACTG : 1405798 112 : sLysLysTyrAlaPheIleAspLysThrGlyLeuIleLeuLysThrIleHisValS : 130 ||||||||||||| !!:::||| ...|||||| |||||| !|||:!!| sLysLysTyrAlaValLeuAspThrLysAsnLeuIleSerLysThrAlaHisLeuS 1405799 : TAAAAAGTACGCTGTTCttgatacaaaaaatttaatatcaaaaaCAGCACATCTAT : 1405855 131 : erTyrArgLeuThrThrSerIleIleValLeuTyrValMetValAlaIleIleHis : 148 ||!:!|||||||||!.!! !:!:||| !:!!! !||| !.!! ! !:!! erPheArgLeuThrAsnIleValIleCysIleCysValSerSerThrAlaCysTyr 1405856 : CTTTTCGATTAACCAATATAGTGATATGTATCTGTGTATCATCCACGGCATGTTAT : 1405909 149 : IleIleGlyAsnAlaThrSerAlaHisSerAsnGluThr<-><->TyrSerLeuIl : 165 !|||||| ! !.!! !! !...!!!||| !||| ..!|||:! AlaIleGlyValLeuAlaProGlnArgThrAsnIleThrAlaProArgGluLeuLe 1405910 : GCAATTGGAGTTTTGGCGCCACAAAGGACTAATATAACAGCACCTCGAGAACTTTT : 1405966 166 : eLeuLysMetAspLeuProPheGluIleAsnLysSerProAsnTyrGluLeuValL : 184 ::!!||||||||||||||||||.!.! |||!!.||||||! !||||||||||||: uIleLysMetAspLeuProPheAsnThrAsnAsnSerProIleTyrGluLeuValI 1405967 : GATAAAAATGGACTTGCCATTTAATACGAACAATTCGCCTATTTACGAGCTGGTAA : 1406023 185 : euThrAlaGlnIlePheHisGlnThrTyrThrAlaPheThrPheSerValTyrSer : 202 !!..! !||| !.!. !:!!..!! |||||||||||||||.!!|||!:!||| leValLeuGlnTyrLeuCysLysValSerThrAlaPheThrPheGlyValPheSer 1406024 : TAGTTTTACAATACCTATGCAAAGTATCGACAGCTTTTACGTTTGGTGTATTCAGC : 1406077 203 : AlaLeuIleLeuMetValVal : 209 ::!|||:!!||||||:!!||| SerLeuLeuLeuMetMetVal 1406078 : AGTCTGCTTTTGATGATGGTA : 1406100 vulgar: gi|805819498|ref|XP_012149882.1| 92 209 . KQ414716.1 1405743 1406100 + 238 M 69 207 G 0 6 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1405744 1406100 238 + . gene_id 6 ; sequence gi|805819498|ref|XP_012149882.1| ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1405744 1406100 . + . KQ414716.1 exonerate:protein2genome:local exon 1405744 1406100 . + . insertions 6 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1405744 1406100 238 + . alignment_id 6 ; Query gi|805819498|ref|XP_012149882.1| ; Align 1405744 93 207 ; Align 1405957 162 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819498|ref|XP_012149882.1| PREDICTED: uncharacterized protein LOC100884046 [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 212 Query range: 96 -> 209 Target range: 1398613 -> 1398958 97 : GluAlaIleLeuCysAspMetLeuSerThrIleGluGluGluCysLysLysTyrAl : 115 .!.::!:!!!!! !!|||!!:|||||||||!!:||||||!!:|||:!!|||||||| HisSerValPheSerAspIleLeuSerThrMetGluGluAspCysGlnLysTyrAl 1398614 : CACAGCGTATTTAGTGACATTTTATCAACCATGGAAGAGGATTGTCAGAAATATGC : 1398668 116 : aPheIleAspLysThrGlyLeuIleLeuLysThrIleHisValSerTyrArgLeuT : 134 | !||||||! !!.! !|||!!:! !|||||| !!!.:::|||::: |||| aAlaIleAspIleAsnLysLeuMetSerLysThrGlyGlnLeuSerPheTyrLeuT 1398669 : TGCTATAGATATAAATAAGTTGATGTCAAAAACCGGACAgctatctttttatttaa : 1398725 135 : hrThrSerIleIleValLeuTyrValMetValAlaIleIleHisIleIleGlyAsn : 152 ||:::! !:!!!!: !||||||:!! !||| !.!!:!!|||! !..!!.! hrSerIleValMetSerLeuTyrMetAlaSerAlaAlaPheTyrIleThrAsnThr 1398726 : caagcATTGTTATGTCTTTGTATATGGCATCTGCAGCATTTTACATAACTAATACT : 1398779 153 : AlaThrSerAlaHisSerAsnGluThrTyrSer<-><->LeuIleLeuLysMetAs : 169 ! !! ! ! !:!|||! :!! ||| |||:!!:!!|||||||| IleGlyPheGlnGlyAsnAsnAlaSerValSerArgGluLeuLeuMetLysMetAs 1398780 : ATTGGATTTCAAGGAAATAATGCTTCAGTATCTCGGGAGCTCCTTATGAAAATGGA : 1398836 170 : pLeuProPheGluIleAsnLysSerProAsnTyrGluLeuValLeuThrAlaGlnI : 188 |||||||||||||! !!:!:!!|||||||||||||||||||||:!!|||.!!|||: pLeuProPheGluThrSerGluSerProAsnTyrGluLeuValValThrThrGlnV 1398837 : TTTGCCTTTCGAGACCAGCGAATCGCCGAATTACGAACTTGTAGTAACTACACAGG : 1398893 189 : lePheHisGlnThrTyrThrAlaPheThrPheSerValTyrSerAlaLeuIleLeu : 206 !!.!! !!!. !! ..!||| ! .!!!:!.!!!.!!:!!:!||||||:!!||| alLeuIleHisLeuSerValAlaValAlaTyrGlyAlaPheAsnAlaLeuLeuLeu 1398894 : TCCTTATTCACTTATCAGTGGCCGTAGCATACGGTGCATTCAATGCTCTTCTCTTA : 1398947 207 : MetValVal : 209 ||||||||| MetValVal 1398948 : ATGGTGGTA : 1398958 vulgar: gi|805819498|ref|XP_012149882.1| 96 209 . KQ414716.1 1398613 1398958 + 212 M 67 201 G 0 6 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1398614 1398958 212 + . gene_id 7 ; sequence gi|805819498|ref|XP_012149882.1| ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1398614 1398958 . + . KQ414716.1 exonerate:protein2genome:local exon 1398614 1398958 . + . insertions 6 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1398614 1398958 212 + . alignment_id 7 ; Query gi|805819498|ref|XP_012149882.1| ; Align 1398614 97 201 ; Align 1398821 164 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819498|ref|XP_012149882.1| PREDICTED: uncharacterized protein LOC100884046 [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 22 -> 74 Target range: 1394239 -> 1394395 23 : IleAspLysGluGlnLeuArgPhePheIleLysArgHisGlnAspIleIleIlePh : 41 :!!...!:!.!. !!:!! !!.||| ! ||||||!!. ||||||||| LeuSerArgAsnThrThrLysSerLeuIleHisArgHisHisArgIleIleIleAs 1394240 : TTATCGAGAAACACCACCAAATCATTAATTCACAGACATCATCGAATCATTATTAA : 1394294 42 : eThrGluLysIleGluLysTyrPheThrTyrIleAlaLeuSerGlnLeuPheThrA : 60 !:!!!!:...||||||!.. !|||:!!||||||||||||! !|||! !!!. !| nSerAspSerIleGluSerLeuPheSerTyrIleAlaLeuMetGlnTrpLeuCysA 1394295 : TTCGGACTCTATCGAGAGTCTTTTTTCATACATTGCTTTGATGCAGTGGTTATGTA : 1394351 61 : snThrLeuValThrCysCysLeuGlyValMetIleValIleVal : 74 |||||||||||! !||||||:!!||| !!:!:|||||||||||| snThrLeuValIleCysCysIleGlyPheLeuIleValIleVal 1394352 : ACACGCTCGTTATATGTTGCATAGGATTCTTAATAGTAATTGTA : 1394395 vulgar: gi|805819498|ref|XP_012149882.1| 22 74 . KQ414716.1 1394239 1394395 + 124 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394240 1394395 124 + . gene_id 8 ; sequence gi|805819498|ref|XP_012149882.1| ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1394240 1394395 . + . KQ414716.1 exonerate:protein2genome:local exon 1394240 1394395 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394240 1394395 124 + . alignment_id 8 ; Query gi|805819498|ref|XP_012149882.1| ; Align 1394240 23 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819498|ref|XP_012149882.1| PREDICTED: uncharacterized protein LOC100884046 [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 229 -> 278 Target range: 1387191 -> 1387338 230 : AspLysLysGlnLeuGluPhePheIleSerArgHisGlnAspIleIleValPheTh : 248 .!.||| ! !:!!:!! ! !!:!! !||||||||| |||||| !.!.:! GlnLysLeuThrIleLysAspValValValArgHisGlnArgIleIleArgLeuSe 1387192 : CAAAAACTGACAATAAAGGATGTCGTTGTTAGGCATCAACGAATTATACGACTGTC : 1387246 249 : rGluLysIleGluGlnPhePheThrTyrMetAlaLeuSerGlnLeuLeuSerAsnI : 267 !:!!!!.|||||| ! !!|||||||||!!::!!|||! |||...|||||||||: rLysAsnIleGluThrValPheThrTyrIleSerLeuCysGlnPheLeuSerAsnM 1387247 : TAAAAATATCGAGACAGTTTTTACTTATATATCATTATgccaatttttatcgaata : 1387303 268 : leLeuIleThrCysCysLeuGlyPheLeuIleIle : 278 ::|||:!!! !|||! !:!!.!!|||:!!:!::!! etLeuValIleCysPheIleSerPheValLeuVal 1387304 : tgcTGGTTATCTGTTTCATAAGCTTCGTTTTGGTA : 1387338 vulgar: gi|805819498|ref|XP_012149882.1| 229 278 . KQ414716.1 1387191 1387338 + 102 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387192 1387338 102 + . gene_id 9 ; sequence gi|805819498|ref|XP_012149882.1| ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387192 1387338 . + . KQ414716.1 exonerate:protein2genome:local exon 1387192 1387338 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387192 1387338 102 + . alignment_id 9 ; Query gi|805819498|ref|XP_012149882.1| ; Align 1387192 230 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 4 -> 72 Target range: 20526 -> 20325 5 : LeuAspLeuIleIleProLeuAsnGluThrArgProLysGluPheLeuPheLysAlaSer : 24 ||||||:!! ! |||||||||:!!|||||| !:::! !|||:!!!:! !||| LeuAspIleTyrAlaProLeuAsnLysThrArgLysArgValPheValTyrProAla--- 20526 : TTGGACATTTACGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCC--- : 20469 25 : TyrAlaPheIleGluValAspAspHisPheIleSerValPheLeuHisLeuSerTrpIle : 44 ||| !!::!!:!!: !!!:.!.:!!!:!!!:! !:!!.!.:!!|||:!!! !!:::!: TyrTyrTrpMetAspProGluGlnTyrTyrMetIleMetIleIleHisIleMetPheVal 20468 : TATTACTGGATGGATCCTGAGCAATACTACATGATAATGATAATACACATAATGTTCGTG : 20412 45 : AlaIleValThrValTyrCysIleAlaIleValAspSerLeuTyrIleLeuIleIleHis : 64 !.!|||:!!..! ! ! .!!..! ! !|||! ! !|||:!:! ! !:!:!!. ValIleMetValCysValIlePheCysAlaCysAspMetAsnTyrValTyrAlaValGln 20411 : GTGATCATGGTCTGTGTCATATTCTGTGCTTGCGACATGAACTACGTGTACGCTGTGCAG : 20352 65 : HisValCysGlyLeuPheAspVal : 72 |||!.!|||||||||!!.! !||| HisAlaCysGlyLeuLeuAlaVal 20351 : CACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: gi|805752310|ref|XP_012144545.1| 4 72 . KQ414772.1 20526 20325 - 103 M 19 57 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20526 103 - . gene_id 1 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20526 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20526 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 20326 20526 103 - . alignment_id 1 ; Query gi|805752310|ref|XP_012144545.1| ; Align 20527 5 57 ; Align 20470 25 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 454 -> 508 Target range: 45002 -> 44742 455 : TyrSerCysAsnTrpTyrGlyIleProIleLysPheGlnLysLeuLeuCysIleMetIle : 474 |||..!...! !|||||| !!!:||| !|||.!!||| !||| ! !:!! !:!! TyrGluAlaIleTrpTyrLysMetProProLysLeuGlnLeuLeuAspValValAlaLeu 45002 : TACGAGGCAATTTGGTATAAGATGCCACCTAAACTTCAGTTGCTAGACGTTGTAGCGCTT : 44945 475 : LeuArgCysSerLysProAlaIleLeuSerAlaGlyGlyLeuTyrAspMetAsnMetGlu : 494 !!:! !! !! ||| !!||||||!!!|||||||||||| :!::!!:!!.!. ArgLysSerLeuThrProProIleLeuThrAlaGlyGlyLeuMetArgLeuAspLeuAsn 44944 : AGAAAAAGCCTAACTCCTCCTATACTGACGGCGGGAGGGTTGATGCGGTTAGATTTGAAT : 44885 495 : AsnTyrGlyLys >>>> Target Intron 1 >>>> AlaValLysAlaCysMetS : 505 ::!!:!!.!:!! 98 bp :!!|||||||||:!:| SerPheAlaGln++ ++LeuLeuLysAlaCysValS 44884 : TCTTTCGCACAGgt.........................agctgCTGAAAGCTTGCGTCT : 44754 506 : erTyrPheThr : 508 |||||!:!||| erTyrTyrThr 44753 : CGTATTATACG : 44743 vulgar: gi|805752310|ref|XP_012144545.1| 454 508 . KQ414772.1 45002 44742 - 102 M 44 132 5 0 2 I 0 94 3 0 2 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 44743 45002 102 - . gene_id 2 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 44871 45002 . - . KQ414772.1 exonerate:protein2genome:local exon 44871 45002 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 44869 44870 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 44773 44870 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 44773 44774 . - . intron_id 0 ; splice_site "ag" KQ414772.1 exonerate:protein2genome:local cds 44743 44772 . - . KQ414772.1 exonerate:protein2genome:local exon 44743 44772 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 44743 45002 102 - . alignment_id 2 ; Query gi|805752310|ref|XP_012144545.1| ; Align 45003 455 132 ; Align 44773 499 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 0 -> 104 Target range: 26207 -> 25898 1 : MetAsnProThrLeuAspLeuIleIleProLeuAsnGluThrArgProLysGluPheLeu : 20 :!!:::|||! !||||||:!!:!!!!:|||||||||||||||||| !!::! !|||:!! ValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheVal 26207 : GTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTC : 26150 21 : PheLysAlaSerTyrAlaPheIleGluValAspAspHisPheIleSerValPheLeuHis : 40 !:! !||| ||| !|||:!!!!:! !||| ! :!! ! !! !:!! ! !||| TyrProAla---TyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHis 26149 : TATCCAGCT---TACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCAT : 26093 41 : LeuSerTrpIleAlaIleValThrValTyrCysIleAlaIleValAspSerLeuTyrIle : 60 :!!! ! :!!!.!:!!:!! !:!!! ! !.!!..! ! !|||:!! !|||:!: MetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrVal 26092 : ATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTG : 26033 61 : LeuIleIleHisHisValCysGlyLeuPheAspValCysGlyTyrGlnIleGluThrAla : 80 ! ! !:!:!!.|||!.!|||||||||!!.! !:!!...|||!! !:!!:!! ! ! TyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGln 26032 : TACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAA : 25973 81 : ThrGlnAspProGluLeuArgTyrAspGlnPheLysGlnCysValMetThrHisHisLys : 100 !..!!!: !! !!!! !||| .!.||| ! ! !:!:.!!.!.:!!!!. LeuMetGluAsnGlyPheLeuTyrArgAsnPheValGlyPheCysLeuAlaGluAsnAsn 25972 : TTAATGGAAAATGGTTTTCTTTATAGAAATTTCGTTGGCTTTTGTTTAGCTGAAAACAAT : 25913 101 : AlaLeuMetLeu : 104 ..!|||:!!:!! CysLeuLeuVal 25912 : TGTCTGTTGGTA : 25899 vulgar: gi|805752310|ref|XP_012144545.1| 0 104 . LHQN01017803.1 26207 25898 - 127 M 23 69 G 1 0 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25899 26207 127 - . gene_id 1 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25899 26207 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25899 26207 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25899 26207 127 - . alignment_id 1 ; Query gi|805752310|ref|XP_012144545.1| ; Align 26208 1 69 ; Align 26139 25 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 269 -> 349 Target range: 26225 -> 25988 270 : PheIleTyrIleProLeuIleAsnProThrLeuAspLeuIleIleProLeuAsnGluThr : 289 |||!!:! !:!:|||!!!:!::::|||! !||||||:!!:!!!!:||||||||||||||| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThr 26225 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACG : 26168 290 : ArgProLysGluGlnLeuPheGlyValCysTyrValPheIleAsnProAspAspTyrPhe : 309 ||| !!::! ! :!!!:! !..!||| !|||:!!:!! !||| ! ||| ! ArgAlaArgLeuPheValTyr---ProAlaTyrTyrPheValAspGluAspLysTyrHis 26167 : CGAGCACGGTTGTTCGTCTAT---CCAGCTTACTATTTCGTCGACGAGGACAAATATCAT : 26111 310 : ThrAlaValPheLeuHisMetGlyTrpThrThrTrpValThrValTyrAsnIleIleThr : 329 ! !:!! ! !|||||| ! ..!..! :!! !:!!! ! !.!! !.!! TyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 26110 : TACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 26051 330 : ValAspSerLeuTyrIleLeuIleIleHisHisValCysGlyLeuPheAspValCysGly : 349 !|||:!! !|||:!:! ! !:!:!!.|||!.!|||||||||!!.! !:!!...||| CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 26050 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 25991 vulgar: gi|805752310|ref|XP_012144545.1| 269 349 . LHQN01017803.1 26225 25988 - 121 M 27 81 G 1 0 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26225 121 - . gene_id 2 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26225 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26225 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26225 121 - . alignment_id 2 ; Query gi|805752310|ref|XP_012144545.1| ; Align 26226 270 81 ; Align 26145 298 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 454 -> 508 Target range: 32846 -> 32586 455 : TyrSerCysAsnTrpTyrGlyIleProIleLysPheGlnLysLeuLeuCysIleMetIle : 474 |||..!...! !|||||| !!!:||| !|||.!!||| !||| ! !:!! !:!! TyrGluAlaIleTrpTyrLysMetProProLysLeuGlnLeuLeuAspValValAlaLeu 32846 : TACGAGGCAATTTGGTATAAGATGCCACCTAAACTTCAGTTGCTAGACGTTGTAGCGCTT : 32789 475 : LeuArgCysSerLysProAlaIleLeuSerAlaGlyGlyLeuTyrAspMetAsnMetGlu : 494 !!:! !! !! ||| !!||||||!!!|||||||||||| :!::!!:!!.!. ArgLysSerLeuThrProProIleLeuThrAlaGlyGlyLeuMetArgLeuAspLeuAsn 32788 : AGAAAAAGCCTAACTCCTCCTATACTGACGGCGGGAGGGTTGATGCGGTTAGATTTGAAT : 32729 495 : AsnTyrGlyLys >>>> Target Intron 1 >>>> AlaValLysAlaCysMetS : 505 ::!!:!!.!:!! 98 bp :!!|||||||||:!:| SerPheAlaGln++ ++LeuLeuLysAlaCysValS 32728 : TCTTTCGCACAGgt.........................agctaCTGAAAGCTTGCGTCT : 32598 506 : erTyrPheThr : 508 |||||!:!||| erTyrTyrThr 32597 : CGTATTATACG : 32587 vulgar: gi|805752310|ref|XP_012144545.1| 454 508 . LHQN01017803.1 32846 32586 - 102 M 44 132 5 0 2 I 0 94 3 0 2 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 32587 32846 102 - . gene_id 3 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 32715 32846 . - . LHQN01017803.1 exonerate:protein2genome:local exon 32715 32846 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 32713 32714 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 32617 32714 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 32617 32618 . - . intron_id 0 ; splice_site "ag" LHQN01017803.1 exonerate:protein2genome:local cds 32587 32616 . - . LHQN01017803.1 exonerate:protein2genome:local exon 32587 32616 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 32587 32846 102 - . alignment_id 3 ; Query gi|805752310|ref|XP_012144545.1| ; Align 32847 455 132 ; Align 32617 499 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805812281|ref|XP_012147625.1| PREDICTED: uncharacterized protein LOC100879426 [Megachile rotundata] Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 428 Query range: 268 -> 399 Target range: 4394971 -> 4395364 269 : ValLeuArgThrLeuArgSerGlyCysValValGluAspValAsnThrLeuLeuAl : 287 :::|||! ! !|||! !! ! ! !!||||||.!.|||||||||...||||||.. IleLeuLeuLeuLeuLeuLeuTyrSerValValAsnAspValAsnAsnLeuLeuTh 4394972 : ataCTACTACTGCTACTTTTATACAGCGTTGTGAACGacgtgaataatttattaac : 4395026 288 : aProIleIlePheLeuGlnLeuLeuThrGlyGlyMetGlnIleCysLeuSerGlyP : 306 .||||||||||||:!!||||||||||||.!!|||!!::!!|||||||||||||||| rProIleIlePheMetGlnLeuLeuThrSerGlyIleGluIleCysLeuSerGlyP 4395027 : accCATCATTTTCATGCAACTTCTTACGAGCGGAATAGAGATTTGTTTGAGTGGAT : 4395083 307 : heAlaValLeuSerAsnAsnAlaGlyAspAsnLeuIleLysPheIleAlaTyrLeu : 324 ||||||||:!!..!|||..!.!!||| !:!!|||:!!||||||:!::!!|||||| heAlaValIleAspAsnGlyThrGlyThrAspLeuLeuLysPheValSerTyrLeu 4395084 : TCGCGGTGATCGATAACGGCACCGGTACCGATCTTCTCAAATTTGTGTCTTATTTA : 4395137 325 : AlaSerValThrIleGlnIleValMetTyrCysTrpProGlyGluIleLeuIleGl : 343 .!!|||:!! !:!:|||:!!:!!:!:!::|||||||||||||||||||||:!!|| ThrSerMetGlyValGlnLeuLeuLeuTrpCysTrpProGlyGluIleLeuValGl 4395138 : ACCTCGATGGGGGTGCAACTTTTGCTATGGTGTTGGCCTGGTGAAATTCTCGTTCA : 4395194 344 : nGluSerGlnLysValGlyHisAlaAlaTyrLeuAsnValProTrpTyrGlnLeuP : 362 ||||||| !:!!:!!||||||!.!!.!|||||||||:!!|||||||||.!.|||| nGluSerLeuGluIleGlyHisValValTyrLeuAsnIleProTrpTyrAsnLeuP 4395195 : AGAGAGTTTAGAAATAGGTCATGTAGTCTATCTAAATATACCATGGTACAATTTAC : 4395251 363 : roLeuPheHisArgArgGlnLeuLeuLeuIleIleIleLysSerGlnLysTyrCys : 380 ||! !.!!:!!!:!!:!||||||! !|||!!:||||||!:!:!!|||:!!|||||| roProIleTyrGlnLysGlnLeuCysLeuMetIleIleArgAlaGlnGlnTyrCys 4395252 : CACCGATTTATCAGAAACAACTTTGCCTGATGATCATTAGGGCCCAACAGTATTGC : 4395305 381 : CysIleSerAlaLeuThrPheLysSerLeuSerSerHisThrLeuThrAsnIleSe : 399 !!|||!!!||||||||||||:!!!!!||||||! !|||||||||||| !:!!|| SerIleThrAlaLeuThrPheGlnThrLeuSerIleHisThrLeuThrAlaValSe 4395306 : AGCATTACGGCATTAACGTTTCAAACGTTGTCTATTCACACGTTAACAGCCGTAAG : 4395362 400 : r : 399 | r 4395363 : T : 4395364 vulgar: gi|805812281|ref|XP_012147625.1| 268 399 . KQ414784.1 4394971 4395364 + 428 M 131 393 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4394972 4395364 428 + . gene_id 1 ; sequence gi|805812281|ref|XP_012147625.1| ; gene_orientation . KQ414784.1 exonerate:protein2genome:local cds 4394972 4395364 . + . KQ414784.1 exonerate:protein2genome:local exon 4394972 4395364 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local similarity 4394972 4395364 428 + . alignment_id 1 ; Query gi|805812281|ref|XP_012147625.1| ; Align 4394972 269 393 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805812281|ref|XP_012147625.1| PREDICTED: uncharacterized protein LOC100879426 [Megachile rotundata] Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 268 Query range: 59 -> 140 Target range: 4394807 -> 4395181 60 : ProProAspIleGluAspGlyLeuValArgCysIleArgHisHisGlnArgLeuVa : 78 |||! ! ! :!!:!!! ..!|||:!!!:!|||||||||||||||||||||:!!:! ProArgLysLeuLysAlaAsnLeuIleLysCysIleArgHisHisGlnArgMetIl 4394808 : CCGCGAAAATTAAAAGCGAATCTGATCAAATGCATTCGCCATCACCAACGAATGAT : 4394862 79 : l{As} >>>> Target Intron 1 >>>> {n}ValValAsnGluLeuAsnA : 86 !{||} 131 bp {|}|||||||||!:::::|||: e{As}++ ++{n}ValValAsnAspValAsnA 4394863 : A{AA}gt.........................ag{C}GTTGTGAACGacgtgaata : 4395017 87 : spLeuLeuIleProIleIlePheIleGlnLeuLeuThrSerGlyIleLysIleCys : 104 ::|||||| ||||||||||||!!:|||||||||||||||||||||:!!|||||| snLeuLeuThrProIleIlePheMetGlnLeuLeuThrSerGlyIleGluIleCys 4395018 : atttattaacaccCATCATTTTCATGCAACTTCTTACGAGCGGAATAGAGATTTGT : 4395071 105 : LeuSerGlyPheAlaValMetAsnAsnAsnThrAsnAlaGluLeuIleLysAlaVa : 123 ||||||||||||||||||!!::!!|||..!|||..!.!!!!:|||:!!||| !|| LeuSerGlyPheAlaValIleAspAsnGlyThrGlyThrAspLeuLeuLysPheVa 4395072 : TTGAGTGGATTCGCGGTGATCGATAACGGCACCGGTACCGATCTTCTCAAATTTGT : 4395128 124 : lLeuTyrLeuPheGlyMetThrThrGlnLeuLeuLeuTyrCysTyrProGly : 140 |! !|||||| !..!||| !..!||||||||||||!::|||!::|||||| lSerTyrLeuThrSerMetGlyValGlnLeuLeuLeuTrpCysTrpProGly 4395129 : GTCTTATTTAACCTCGATGGGGGTGCAACTTTTGCTATGGTGTTGGCCTGGT : 4395181 vulgar: gi|805812281|ref|XP_012147625.1| 59 140 . KQ414784.1 4394807 4395181 + 268 M 19 57 S 0 2 5 0 2 I 0 127 3 0 2 S 1 1 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4394808 4395181 268 + . gene_id 2 ; sequence gi|805812281|ref|XP_012147625.1| ; gene_orientation + KQ414784.1 exonerate:protein2genome:local cds 4394808 4394866 . + . KQ414784.1 exonerate:protein2genome:local exon 4394808 4394866 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4394867 4394868 . + . intron_id 1 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4394867 4394997 . + . intron_id 1 KQ414784.1 exonerate:protein2genome:local splice3 4394996 4394997 . + . intron_id 0 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394998 4395181 . + . KQ414784.1 exonerate:protein2genome:local exon 4394998 4395181 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local similarity 4394808 4395181 268 + . alignment_id 2 ; Query gi|805812281|ref|XP_012147625.1| ; Align 4394808 60 57 ; Align 4394999 80 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805812281|ref|XP_012147625.1| PREDICTED: uncharacterized protein LOC100879426 [Megachile rotundata] Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 1 -> 52 Target range: 4394648 -> 4394801 2 : PheThrValGlnThrValSerAlaIleTyrAsnSerAlaAlaValTrpGlyIleGl : 20 ||| ! !|||! !|||:!!:!!!!: ! !:!!||||||:!!! |||:!:!! PheLeuCysGlnIleValAlaSerMetIleCysAlaAlaAlaIleSerGlyLeuAs 4394649 : TTCCTTTGTCAAATCGTAGCATCTATGATCTGCGCAGCCGCGATCTCAGGCTTGGA : 4394703 21 : uThrSerCysMetThrValIleLeuHisValSerGlyGlnPheLysLeuIleLysT : 39 :.!!!!!! !||||||..!|||||||||||||||||||||||||||||||||!!.! pAlaThrPheMetThrThrIleLeuHisValSerGlyGlnPheLysLeuIleAsnA 4394704 : CGCGACGTTTATGACCACGATTCTACACGTGTCTGGTCAATTCAAATTGATCAACA : 4394760 40 : hrTrpIleAsnAsnIleGlyValLysIleLysAsnGluPro : 52 !||||||!:!!!.||||||:!!:!!|||!!.! !|||||| rgTrpIleSerLysIleGlyIleGluIleAsnIleGluPro 4394761 : GATGGATCAGTAAGATTGGAATAGAGATAAATATCGAGCCC : 4394801 vulgar: gi|805812281|ref|XP_012147625.1| 1 52 . KQ414784.1 4394648 4394801 + 135 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4394649 4394801 135 + . gene_id 3 ; sequence gi|805812281|ref|XP_012147625.1| ; gene_orientation . KQ414784.1 exonerate:protein2genome:local cds 4394649 4394801 . + . KQ414784.1 exonerate:protein2genome:local exon 4394649 4394801 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local similarity 4394649 4394801 135 + . alignment_id 3 ; Query gi|805812281|ref|XP_012147625.1| ; Align 4394649 2 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819498|ref|XP_012149882.1| PREDICTED: uncharacterized protein LOC100884046 [Megachile rotundata] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 163 -> 235 Target range: 44874 -> 45090 164 : LeuIleLeuLysMetAspLeuProPheGluIleAsnLysSerProAsnTyrGluLeuVal : 183 |||:!!!!!::: !!!!!|||!:!!!:! !:!! |||||||||||||||!!!..! LeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThr 44875 : CTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACA : 44932 184 : LeuThrAlaGlnIlePheHisGlnThrTyrThrAlaPheThrPheSerValTyrSerAla : 203 :!!! !|||||||||.!. ! !|||.!!||| !|||!:!!!!!.! !..!.!! ValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThr 44933 : GTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACT : 44992 204 : LeuIleLeuMetValValLeuHisValGlyCysGlnIleAspIleLeuCysGlnThrIle : 223 !!!|||:!!|||:!!:!!||||||||| !! ! |||:!!...! !||| ! .!. !.!! PheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArgAsnGluPhe 44993 : TTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGAAACGAATTC : 45052 224 : IleAspValProLeuArgAspLysLysGlnLeuGlu : 235 ! ! :!!! ! ! !!|||||| ! !|||:!! GlyLysLeuGlnAlaCysAspLysValThrLeuGln 45053 : GGTAAGCTTCAAGCATGCGATAAAGTAACATTACAG : 45090 vulgar: gi|805819498|ref|XP_012149882.1| 163 235 . KQ414804.1 44874 45090 + 100 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44875 45090 100 + . gene_id 1 ; sequence gi|805819498|ref|XP_012149882.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44875 45090 . + . KQ414804.1 exonerate:protein2genome:local exon 44875 45090 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44875 45090 100 + . alignment_id 1 ; Query gi|805819498|ref|XP_012149882.1| ; Align 44875 164 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 1 -> 74 Target range: 485716 -> 485932 2 : AsnProThrLeuAspLeuIleIleProLeuAsnGluThrArgProLysGluPheLeuP : 21 ||| !! !||||||:!!:!:|||||||||||| ! |||||||||::! !.!!! !. AsnSerIleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProI 485717 : AACAGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTA : 485774 22 : heLysAlaSerTyrAlaPheIleGluValAspAspHisPheIleSerValPheLeuHi : 40 !.!!.:!!..!:!! |||:!!!!: !.!. ! :!!||| ! !!:!! !|| leAsnSerGluHis---PheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHi 485775 : TAAACTCGGAACAT---TTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACA : 485828 41 : sLeuSerTrpIleAlaIleValThrValTyrCysIleAlaIleValAspSerLeuTyr : 59 |:!! ! .!!!.!|||:!! !!.! :!! !! !...::: ||| sValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIle 485829 : TGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaatt : 485885 60 : IleLeuIleIleHisHisValCysGlyLeuPheAspValCysGly : 74 ::: !||||||!!.|||..!|||||||||!:! :!! !||| MetAlaIleIleGlnHisThrCysGlyLeuTyrThrIleValGly 485886 : atggCGATAATACAGCACACCTGTGGTTTGTATACAATCGTTGGG : 485932 vulgar: gi|805752310|ref|XP_012144545.1| 1 74 . KQ414815.1 485716 485932 + 106 M 24 72 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485717 485932 106 + . gene_id 1 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485717 485932 . + . KQ414815.1 exonerate:protein2genome:local exon 485717 485932 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 485717 485932 106 + . alignment_id 1 ; Query gi|805752310|ref|XP_012144545.1| ; Align 485717 2 72 ; Align 485789 27 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 4 -> 70 Target range: 457210 -> 457405 5 : LeuAspLeuIleIleProLeuAsnGluThrArgProLysGluPheLeuPheLysAlaS : 24 ||||||:!!:!::!!||||||||||||:!!|||||| |||!!.! !.!!! !|||. LeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaG 457211 : CTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGG : 457268 25 : erTyrAlaPheIleGluValAspAspHisPheIleSerValPheLeuHisLeuSerTr : 43 .!||| |||:!!!!::!! ! ! :!!.!. !! !:!!.!! !|||:!!! ! luTyr---PheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleTh 457269 : AATAC---TTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCAC : 457322 44 : pIleAlaIleValThrValTyrCysIleAlaIleValAspSerLeuTyrIleLeuIle : 62 ! ! !:!::!!.!!!.! ! :!!.!! ! !!!:|||||| !||| !! ! rCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsn 457323 : GTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAAC : 457379 63 : IleHisHisValCysGlyLeuPhe : 70 :!!! |||||||||||||||||| ValLeuHisValCysGlyLeuPhe 457380 : GTACTGCACGTTTGTGGATTGTTC : 457405 vulgar: gi|805752310|ref|XP_012144545.1| 4 70 . KQ414815.1 457210 457405 + 105 M 21 63 G 1 0 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457211 457405 105 + . gene_id 2 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457211 457405 . + . KQ414815.1 exonerate:protein2genome:local exon 457211 457405 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457211 457405 105 + . alignment_id 2 ; Query gi|805752310|ref|XP_012144545.1| ; Align 457211 5 63 ; Align 457274 27 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 261 Query range: 401 -> 515 Target range: 1233610 -> 1233123 402 : IleSerThrThrAlaValGlnIleLeuMetHisMetAspGlnProLeuAspSerAl : 420 :::..!!.! !:!! !!|||! !:!!:!: :!!|||::!||| !!!::!! LeuAspAsnPheSerPheGlnThrValLeuThrLeuAspArgProAlaGluAlaLe 1233610 : ctcGATAACTTTTCCTTCCAGACAGTCCTCACACTGGACAGGCCGGCAGAAGCTCT : 1233556 421 : aArgPheIleLeuPhePheValCysSerHisIleHisLeuTyrIleIleSerLeuP : 439 !|||! ! !:!!|||.!!|||.....!!!..!!||||||!:!|||||||||||| uArgCysAlaValPheLeuValAlaGluGlnPheHisLeuPheIleIleSerLeuP 1233555 : TAGATGTGCTGTGTTCCTTGTAGCGGAGCAATTTCATTTGTTCATCATTAGCTTAC : 1233499 440 : heGlyGlnIleIleLeuAsnHisSerLysThrLeuAlaGluArg{Il} >>>> T : 454 !||||||! !:!!:!!:!!|||!!!! !! !|||:!!:!! !{||} roGlyGlnThrLeuValAspHisCysThrLysLeuSerLysAsp{Il}++ 1233498 : CTGGACAGACACTCGTGGATCATTGTACGAAACTATCGAAGGAT{AT}gt...... : 1233450 455 : arget Intron 1 >>>> {e}TyrSerCysAsnTrpTyrGlyIleProIleLy : 465 70 bp {|}||||||! !!..|||||| !:!!||| !|| ++{e}TyrSerSerThrTrpTyrLysValProAlaLy 1233449 : ...................ag{A}TACTCTTCCACGTGGTATAAAGTACCGGCAAA : 1233351 466 : sPheGlnLysLeuLeuCysIleMetIleLeuArgCysSerLysProAlaIleLeuS : 484 |||||||::!:!!:!!! !! ||| !:!!|||..! !||||||..!:!!|||! sPheGlnArgValIleTyrThrMetGlnIleArgAlaLeuLysProCysValLeuT 1233350 : ATTTCAGCGAGTAATTTACACGATGCAAATAAGGGCTCTAAAGCCGTGTGTTTTGA : 1233294 485 : erAlaGlyGlyLeuTyrAspMetAsnMetGluAsnTyrGlyLys >>>> Targe : 499 !!|||||||||||||||!!:|||||||||||||||!:!!.!!!. hrAlaGlyGlyLeuTyrGluMetAsnMetGluAsnPheAlaAsn++ 1233293 : CTGCAGGTGGATTGTATGAAATGAACATGGAGAACTTTGCAAACgt.......... : 1233247 500 : t Intron 2 >>>> AlaValLysAlaCysMetSerTyrPheThrMetPheLeu : 511 75 bp .!! !!|||.!!|||||||||||||||||||||.!.:!! ++ThrPheLysThrCysMetSerTyrPheThrMetLeuMet 1233246 : ...............agaCATTCAAAACGTGCATGTCATACTTCACAATGCTGATG : 1233138 512 : SerMetArgGlu : 515 |||:!:|||||| SerLeuArgGlu 1233137 : TCACTTAGAGAA : 1233124 vulgar: gi|805752310|ref|XP_012144545.1| 401 515 . KQ414851.1 1233610 1233123 - 261 M 52 156 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 44 132 5 0 2 I 0 71 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233124 1233610 261 - . gene_id 1 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233453 1233610 . - . KQ414851.1 exonerate:protein2genome:local exon 1233453 1233610 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233451 1233452 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233383 1233452 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233383 1233384 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233250 1233382 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233382 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 1 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233124 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233124 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233124 1233610 261 - . alignment_id 1 ; Query gi|805752310|ref|XP_012144545.1| ; Align 1233611 402 156 ; Align 1233382 455 132 ; Align 1233175 499 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 252 Query range: 261 -> 379 Target range: 1234323 -> 1233851 262 : ThrLeuMetTrpAlaThrIleGlyPheIleTyrIleProLeuIleAsnProThrLe : 280 ||||||:!!! !! !:!!! !|||:!: :!!||||||:!! !||| !|| ThrLeuLeuSerPheMetValValPheLeuLeuValProLeuValPheProPheLe 1234323 : ACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTT : 1234269 281 : uAspLeuIleIleProLeuAsnGluThrArgProLysGluGlnLeuPheGlyValC : 299 ||||:!!:!!:!!|||||||||||||||||||||::!:!!||| !||| !!||| uAspValValLeuProLeuAsnGluThrArgProArgGlnGlnGlyPheArgValA 1234268 : GGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTA : 1234212 300 : ysTyrValPheIleAsnProAspAspTyrPheThrAlaValPheLeuHisMetGly : 317 !|||:!!!:!.!!:!! !! ||||||||| !::!|||!:!!!!!!.:!!!.! snTyrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyrPheGlnLeuAla 1234211 : ACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCC : 1234158 318 : TrpThrThrTrpValThrValTyrAsnIleIleThrValAspSerLeuTyrIleLe : 336 ||| !.!! |||..!||| ! !||||||||||||||||||||||||!!::! TrpGlyAlaValValValValMetIleIleIleThrValAspSerLeuTyrMetIl 1234157 : TGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGAT : 1234101 337 : uIleIleHisHisValCysGlyLeuPheAspValCys{Gl} >>>> Target I : 349 !||||||||||||!.! !!|||:!!|||! !||||||{||} 118 eIleIleHisHisAlaSerGlyMetPheAlaValCys{Gl}++ 1234100 : AATAATTCACCATGCCAGCGGAATGTTCGCCGTGTGC{GG}gt............. : 1234058 350 : ntron 1 >>>> {y}TyrGlnIleGluThrIlePheLysArgSerAsnLeuGln : 362 bp {|} !!..!||| ! !! ! !! !..!|||! ! ! +-{y}AspSerIleTyrGlyAsnAspIleSerGluAsnHisThr 1234057 : ............aa{G}GACTCAATCTATGGCAATGACATTTCTGAGAATCATACG : 1233905 363 : HisTyrGlnPheLysGlnCysValIleHisHisHisLysAlaLeuGluPhe : 379 ||| ! |||||||||!:!||||||! ! ||| !!||||||:!!|||||| HisGluGlnPheLysArgCysValThrThrHisAspLysAlaIleGluPhe 1233904 : CACGAACAGTTCAAACGATGCGTGACTACGCACGATAAAGCTATCGAGTTT : 1233852 vulgar: gi|805752310|ref|XP_012144545.1| 261 379 . KQ414851.1 1234323 1233851 - 252 M 87 261 S 0 2 5 0 2 I 0 114 3 0 2 S 1 1 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233852 1234323 252 - . gene_id 2 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1234061 1234323 . - . KQ414851.1 exonerate:protein2genome:local exon 1234061 1234323 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234059 1234060 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233943 1234060 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233943 1233944 . - . intron_id 0 ; splice_site "AA" KQ414851.1 exonerate:protein2genome:local cds 1233852 1233942 . - . KQ414851.1 exonerate:protein2genome:local exon 1233852 1233942 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233852 1234323 252 - . alignment_id 2 ; Query gi|805752310|ref|XP_012144545.1| ; Align 1234324 262 261 ; Align 1233942 350 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 245 Query range: 261 -> 379 Target range: 1229488 -> 1229016 262 : ThrLeuMetTrpAlaThrIleGlyPheIleTyrIleProLeuIleAsnProThrLe : 280 .!!|||:!:!::|||! ! !! !|||:!: :!!||||||.!!..!|||.!!|| AlaLeuLeuPheAlaMetCysValPheLeuLeuValProLeuPheGlyProAlaLe 1229488 : GCTTTACTCTTCGCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCT : 1229434 281 : uAspLeuIleIleProLeuAsnGluThrArgProLysGluGlnLeuPheGlyValC : 299 ||||:!!:!!:!!|||! !|||||||||||||||::!:!!||||||||| !!||| uAspIleValLeuProSerAsnGluThrArgProArgGlnGlnLeuPheArgValA 1229433 : GGACATCGTCCTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTA : 1229377 300 : ysTyrValPheIleAsnProAspAspTyrPheThrAlaValPheLeuHisMetGly : 317 !|||:!!.!!.!!:!!! !! ||||||||| ! !|||!:!:!!!!.:!! ! snTyrIleIlePheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPhe 1229376 : ACTATATAATTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTT : 1229323 318 : TrpThrThrTrpValThrValTyrAsnIleIleThrValAspSerLeuTyrIleLe : 336 ||| !||| ||| !||| !||||||||||||||||||||||||!!::! TrpCysThrIleValLeuValMetAlaIleIleThrValAspSerLeuTyrMetIl 1229322 : TGGTGTACAATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGAT : 1229266 337 : uIleIleHisHisValCysGlyLeuPheAspValCys{Gl} >>>> Target I : 349 !||||||:!!|||!.! !!|||:!!|||! !:!!|||{||} 118 eIleIleTyrHisAlaSerGlyMetPheAlaIleCys{Gl}++ 1229265 : CATAATTTACCATGCCAGCGGAATGTTCGCTATATGC{GG}gt............. : 1229223 350 : ntron 1 >>>> {y}TyrGlnIleGluThrIlePheLysArgSerAsnLeuGln : 362 bp {|} !!..!|||!!:!.!! ! !! !..!|||! ! ! --{y}AspSerIleAspAsnSerAsnIleSerGlnAsnHisThr 1229222 : ............gt{G}GACTCAATCGACAACAGTAACATTTCTCAAAATCATACA : 1229070 363 : HisTyrGlnPheLysGlnCysValIleHisHisHisLysAlaLeuGluPhe : 379 ||| ! |||||||||!:!||||||! ! ||| !!||||||:!!:!!||| HisGluGlnPheLysArgCysValThrMetHisAspLysAlaIleLysPhe 1229069 : CACGAACAGTTCAAACGATGCGTGACTATGCACGATAAAGCTATCAAGTTT : 1229017 vulgar: gi|805752310|ref|XP_012144545.1| 261 379 . KQ414851.1 1229488 1229016 - 245 M 87 261 S 0 2 5 0 2 I 0 114 3 0 2 S 1 1 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229017 1229488 245 - . gene_id 3 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1229226 1229488 . - . KQ414851.1 exonerate:protein2genome:local exon 1229226 1229488 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1229224 1229225 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1229108 1229225 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1229108 1229109 . - . intron_id 0 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local cds 1229017 1229107 . - . KQ414851.1 exonerate:protein2genome:local exon 1229017 1229107 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229017 1229488 245 - . alignment_id 3 ; Query gi|805752310|ref|XP_012144545.1| ; Align 1229489 262 261 ; Align 1229107 350 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 223 Query range: 132 -> 228 Target range: 1233592 -> 1233234 133 : GlnIleLeuMetAlaValGlyLysProHisGluMetLeuArgPheSerLeuPhePh : 151 |||! !:!!:!:.!!:!!! !!:!||| ||| ||||||! !:!!:!!|||.! GlnThrValLeuThrLeuAspArgProAlaGluAlaLeuArgCysAlaValPheLe 1233592 : CAGACAGTCCTCACACTGGACAGGCCGGCAGAAGCTCTTAGATGTGCTGTGTTCCT : 1233538 152 : eLeuCysGluHisIleHisLeuTyrIleIleSerLeuPheGlyGlnIleIleLeuA : 170 !:!!...|||!!..!!||||||!:!|||||||||||| !||||||! !:!!:!!: uValAlaGluGlnPheHisLeuPheIleIleSerLeuProGlyGlnThrLeuValA 1233537 : TGTAGCGGAGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACACTCGTGG : 1233481 171 : snHisSerAlaIleLeuAlaGluArg{Il} >>>> Target Intron 1 >>> : 179 !!|||!!!.!!! !|||:!!:!! !{||} 70 bp spHisCysThrLysLeuSerLysAsp{Il}++ 1233480 : ATCATTGTACGAAACTATCGAAGGAT{AT}gt........................ : 1233450 180 : > {e}TyrSerSerAspTrpTyrGluIleProIleLysPheGlnLysLeuLeuCy : 196 {|}||||||||| ||||||:!!:!!||| !|||||||||::!:!!:!!! ++{e}TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTy 1233449 : .ag{A}TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTA : 1233333 197 : sIleMetIleLeuArgCysSerLysProValAsnLeuAsnAlaGlyGlyLeuTyrA : 215 !! ||| !:!!|||..! !|||||| ! !|||!.!|||||||||||||||! rThrMetGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrG 1233332 : CACGATGCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATG : 1233276 216 : spMetAsnMetGluAsnTyrGlyLysIleLysIleLeuLeu : 228 !:|||||||||||||||!:!!.!!!.:!!::: !:!!:!! luMetAsnMetGluAsnPheAlaAsnValArgTyrIleVal 1233275 : AAATGAACATGGAGAACTTTGCAAACGTTCGTTACATTGTA : 1233235 vulgar: gi|805752310|ref|XP_012144545.1| 132 228 . KQ414851.1 1233592 1233234 - 223 M 46 138 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233235 1233592 223 - . gene_id 4 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233453 1233592 . - . KQ414851.1 exonerate:protein2genome:local exon 1233453 1233592 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233451 1233452 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233383 1233452 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233383 1233384 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233235 1233382 . - . KQ414851.1 exonerate:protein2genome:local exon 1233235 1233382 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233235 1233592 223 - . alignment_id 4 ; Query gi|805752310|ref|XP_012144545.1| ; Align 1233593 133 138 ; Align 1233382 180 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 213 Query range: 2 -> 102 Target range: 1234275 -> 1233857 3 : ProThrLeuAspLeuIleIleProLeuAsnGluThrArgProLysGluPheLeuPh : 21 ||| !||||||:!!:!!:!!|||||||||||||||||||||::!:!! !|| ProPheLeuAspValValLeuProLeuAsnGluThrArgProArgGlnGlnGlyPh 1234275 : CCATTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAGGATT : 1234221 22 : eLysAlaSerTyrAlaPheIleGluValAspAspHisPheIleSerValPheLeuH : 40 |!:!!.!!:!||| !!:!.!!!!:! !! |||:!!|||.!!||||||!:!!!!! eArgValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyrPheG 1234220 : CAGAGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTC : 1234164 41 : isLeuSerTrpIleAlaIleValThrValTyrCysIleAlaIleValAspSerLeu : 58 !.|||:!!||| !|||:!!|||..!||| !||| !! !|||||||||||| lnLeuAlaTrpGlyAlaValValValValMetIleIleIleThrValAspSerLeu 1234163 : AATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTCGTTG : 1234110 59 : TyrIleLeuIleIleHisHisValCysGlyLeuPheAspValCys{Gl} >>>> : 74 |||!!::!!||||||||||||!.! !!|||:!!|||! !||||||{||} TyrMetIleIleIleHisHisAlaSerGlyMetPheAlaValCys{Gl}++ 1234109 : TACATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTGTGC{GG}gt..... : 1234058 75 : Target Intron 1 >>>> {y}TyrGlnIleGluThrAlaThrGlnAspProG : 85 118 bp {|} !!..!||| ! ! ! ! ..! !. +-{y}AspSerIleTyrGlyAsnAspIleSerGluA 1234057 : ....................aa{G}GACTCAATCTATGGCAATGACATTTCTGAGA : 1233911 86 : luLeuArgTyrAspGlnPheLysGlnCysValMetThrHisHisLysAlaLeu : 102 !.! !! !:!!!!:|||||||||!:!||||||! |||||| !!||||||:!! snHisThrHisGluGlnPheLysArgCysValThrThrHisAspLysAlaIle 1233910 : ATCATACGCACGAACAGTTCAAACGATGCGTGACTACGCACGATAAAGCTATC : 1233858 vulgar: gi|805752310|ref|XP_012144545.1| 2 102 . KQ414851.1 1234275 1233857 - 213 M 71 213 S 0 2 5 0 2 I 0 114 3 0 2 S 1 1 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233858 1234275 213 - . gene_id 5 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1234061 1234275 . - . KQ414851.1 exonerate:protein2genome:local exon 1234061 1234275 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234059 1234060 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233943 1234060 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233943 1233944 . - . intron_id 0 ; splice_site "AA" KQ414851.1 exonerate:protein2genome:local cds 1233858 1233942 . - . KQ414851.1 exonerate:protein2genome:local exon 1233858 1233942 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233858 1234275 213 - . alignment_id 5 ; Query gi|805752310|ref|XP_012144545.1| ; Align 1234276 3 213 ; Align 1233942 75 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 208 Query range: 261 -> 349 Target range: 1243860 -> 1243599 262 : ThrLeuMetTrpAlaThrIleGlyPheIleTyrIleProLeuIleAsnProThrLe : 280 ||||||.!.!:: !:!!||| !|||:!!! .!!||||||||| |||! !|| ThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleLe 1243860 : ACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATT : 1243806 281 : uAspLeuIleIleProLeuAsnGluThrArgProLysGluGlnLeuPheGlyValC : 299 ||||:!!:!! !|||||||||||||||||| !!::! !::::::... ::: uAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuG 1243805 : GGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgc : 1243749 300 : ysTyrValPheIleAsnProAspAspTyrPheThrAlaValPheLeuHisMetGly : 317 |||:!!||| :!! ::: ||| ::::::::::!!:!!! ||| lnTyrLeuPhe---AspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGly 1243748 : aataccTGTTC---GACAtggagaagaatttttattcattatacGTCTACACTGGC : 1243698 318 : TrpThrThrTrpValThrValTyrAsnIleIleThrValAspSerLeuTyrIleLe : 336 ||| !:!!!:::!!|||:!! !|||||||||:!!|||:!!||||||:!::! TrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValVa 1243697 : TGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGT : 1243641 337 : uIleIleHisHisValCysGlyLeuPheAspValCysGly : 349 !||||||||||||..!||||||||||||! !||||||||| lIleIleHisHisThrCysGlyLeuPheAlaValCysGly 1243640 : AATCATTCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: gi|805752310|ref|XP_012144545.1| 261 349 . KQ414851.1 1243860 1243599 - 208 M 41 123 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243860 208 - . gene_id 6 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243860 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243860 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243860 208 - . alignment_id 6 ; Query gi|805752310|ref|XP_012144545.1| ; Align 1243861 262 123 ; Align 1243738 304 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 202 Query range: 0 -> 102 Target range: 1224246 -> 1223806 1 : MetAsnProThrLeuAspLeuIleIleProLeuAsnGluThrArgProLysGluPh : 19 !!:||||||..!||||||:!!:!! |||||||||||||||||||||:::..!.! IleAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLe 1224246 : ATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCT : 1224192 20 : eLeuPheLysAlaSerTyrAlaPheIleGluValAspAspHisPheIleSerValP : 38 !|||.!! !!.!|||||| !||||||!!:! ! !!!!:|||||| !|||||| uLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValA 1224191 : TTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGA : 1224135 39 : heLeuHisLeuSerTrpIleAlaIleValThrValTyrCysIleAlaIleValAsp : 56 !!!!||||||! ! ! !!.!||| ! !! ! ||| ! !|||||| snPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAsp 1224134 : ATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGAT : 1224081 57 : SerLeuTyrIleLeuIleIleHisHisValCysGlyLeuPheAspValCysGlyTy : 75 ! !||||||||| !|||||| !|||:!!||||||||||||! |||||||||!! MetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaValCysGly** 1224080 : ATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTGTGTGGGTA : 1224024 76 : rGlnIleGluThrAlaThrGlnAspProGluLeuArgTyrAspGln >>>> Tar : 91 ! ! !! !!! ! ! ! ! !.!.! ! !!:!|||:!! *Ile******ProGluGluIleMetHisHis***PhePheAspLys++ 1224023 : AATATGATAACCGGAAGAAATAATGCATCATTAATTTTTTGACAAGgt........ : 1223974 92 : get Intron 1 >>>> PheLysGlnCysValMetThrHisHisLysAlaLeu : 102 134 bp |||||||||||||||! ! !||||||:!!|||||| ++PheLysGlnCysValThrMetHisHisGluAlaLeu 1223973 : .................agTTCAAACAATGTGTGACAATGCATCACGAAGCCCTT : 1223807 vulgar: gi|805752310|ref|XP_012144545.1| 0 102 . KQ414851.1 1224246 1223806 - 202 M 90 270 5 0 2 I 0 130 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1223807 1224246 202 - . gene_id 7 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1223977 1224246 . - . KQ414851.1 exonerate:protein2genome:local exon 1223977 1224246 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1223975 1223976 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1223843 1223976 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1223843 1223844 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1223807 1223842 . - . KQ414851.1 exonerate:protein2genome:local exon 1223807 1223842 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1223807 1224246 202 - . alignment_id 7 ; Query gi|805752310|ref|XP_012144545.1| ; Align 1224247 1 270 ; Align 1223843 91 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 197 Query range: 269 -> 349 Target range: 1224264 -> 1224024 270 : PheIleTyrIleProLeuIleAsnProThrLeuAspLeuIleIleProLeuAsnGl : 288 !:!!!: !.!!|||||||||||||||..!||||||:!!:!! ||||||||||| TyrMetSerPheProLeuIleAsnProValLeuAspValValAlaProLeuAsnGl 1224264 : TATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGA : 1224210 289 : uThrArgProLysGluGlnLeuPheGlyValCysTyrValPheIleAsnProAspA : 307 ||||||||||:::..!! |||.!! !||| !!|||:!!||||||:!! ! !!! uThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleAspGluTyrG 1224209 : GACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACG : 1224153 308 : spTyrPheThrAlaValPheLeuHisMetGlyTrpThrThrTrpValThrValTyr : 325 !::!!||| !::!||| !!!!|||:!: ! !:!..! ! !! ! luHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSerCysGlyMet 1224152 : AGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATG : 1224099 326 : AsnIleIleThrValAspSerLeuTyrIleLeuIleIleHisHisValCysGlyLe : 344 ! ||||||.!!||||||! !||||||||| !|||||| !|||:!!|||||||| MetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCysGlyLe 1224098 : ATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTGCGGATT : 1224042 345 : uPheAspValCysGly : 349 ||||! ||||||||| uPheAlaValCysGly 1224041 : GTTCGCAGTGTGTGGG : 1224025 vulgar: gi|805752310|ref|XP_012144545.1| 269 349 . KQ414851.1 1224264 1224024 - 197 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224264 197 - . gene_id 8 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224264 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224264 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224264 197 - . alignment_id 8 ; Query gi|805752310|ref|XP_012144545.1| ; Align 1224265 270 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 195 Query range: 0 -> 74 Target range: 1229446 -> 1229224 1 : MetAsnProThrLeuAspLeuIleIleProLeuAsnGluThrArgProLysGluPh : 19 .!...!|||.!!||||||:!!:!!:!!|||! !|||||||||||||||::!:!! PheGlyProAlaLeuAspIleValLeuProSerAsnGluThrArgProArgGlnGl 1229446 : TTTGGTCCAGCCCTGGACATCGTCCTTCCATCAAATGAAACTAGGCCACGGCAACA : 1229392 20 : eLeuPheLysAlaSerTyrAlaPheIleGluValAspAspHisPheIleSerValP : 38 ||||||!:!!.!!:!||| !.!!.!!!!: !! |||:!!|||.!!! !|||! nLeuPheArgValAsnTyrIleIlePheAspGlnAlaAspTyrPhePheTyrValT 1229391 : ACTGTTCAGAGTTAACTATATAATTTTCGACCAAGCAGACTATTTTTTCTACGTGT : 1229335 39 : heLeuHisLeuSerTrpIleAlaIleValThrValTyrCysIleAlaIleValAsp : 56 :!:!!!!.|||! !||| !.!!|||||| !||| ..!||| !! !|||||| yrIleGlnLeuPheTrpCysThrIleValLeuValMetAlaIleIleThrValAsp 1229334 : ATATTCAATTGTTTTGGTGTACAATCGTTCTTGTAATGGCCATTATCACCGTAGAT : 1229281 57 : SerLeuTyrIleLeuIleIleHisHisValCysGlyLeuPheAspValCysGly : 74 |||||||||!!::!!||||||:!!|||!.! !!|||:!!|||! !:!!|||||| SerLeuTyrMetIleIleIleTyrHisAlaSerGlyMetPheAlaIleCysGly 1229280 : TCATTGTACATGATCATAATTTACCATGCCAGCGGAATGTTCGCTATATGCGGG : 1229225 vulgar: gi|805752310|ref|XP_012144545.1| 0 74 . KQ414851.1 1229446 1229224 - 195 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229446 195 - . gene_id 9 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229225 1229446 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229446 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229446 195 - . alignment_id 9 ; Query gi|805752310|ref|XP_012144545.1| ; Align 1229447 1 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 183 Query range: 260 -> 349 Target range: 1240088 -> 1239821 261 : ValThrLeuMetTrpAlaThrIleGlyPheIleTyrIleProLeuIleAsnProTh : 279 |||..!|||.!.! ... ... |||::: :!!|||:::... ||| ValValLeuPheSerValLeuPheIlePheLeuValValProIlePheProProLe 1240088 : GTCGTTTTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcctcctct : 1240034 280 : rLeuAspLeuIleIleProLeuAsnGluThrArgProLysGluGlnLeuPheGlyV : 298 ||||||:!!:!!! !|||||||||||||||||| !!::::::::::::||| | uLeuAspIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIlePheLysV 1240033 : tctggACATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatattcaaag : 1239977 299 : alCysTyrValPheIleAsnProAspAspTyrPheThrAlaValPheLeuHisMet : 316 || !|||:!!.!!|||:!! !|||!!: ! ! ! !..!!:!!!!|||:!! alAsnTyrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPheHisLeu 1239976 : ttaaTTACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTTCACTTG : 1239923 317 : GlyTrpThrThrTrpValThrValTyrAsnIleIleThrValAspSerLeuTyrIl : 335 ..!||||||||| ..! !! ! ::!:!::!!!:! !!!:! !:!!|||:! SerTrpThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIleTyrVa 1239922 : TCTTGGACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGT : 1239866 336 : eLeuIleIleHisHisValCysGlyLeuPheAspValCysGly : 349 !|||:!!|||||||||..! !!|||||||||! !|||..!||| lLeuLeuIleHisHisThrSerGlyLeuPheAlaValAlaGly 1239865 : CCTTCTTATTCATCATACCAGCGGTCTGTTTGCTGTGGCTGgg : 1239822 vulgar: gi|805752310|ref|XP_012144545.1| 260 349 . KQ414851.1 1240088 1239821 - 183 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240088 183 - . gene_id 10 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239822 1240088 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240088 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240088 183 - . alignment_id 10 ; Query gi|805752310|ref|XP_012144545.1| ; Align 1240089 261 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 179 Query range: 454 -> 515 Target range: 1222505 -> 1222002 455 : TyrSerCysAsnTrpTyrGlyIleProIleLysPheGlnLysLeuLeuCysIleMe : 473 |||:!!! !!!.||||||! !:!!|||:!!||| |||||||||:!!! !! || TyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTyrThrMe 1222505 : TACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTACACGAT : 1222451 474 : tIleLeuArgCysSerLysProAlaIleLeuSerAlaGlyGlyLeuTyrAspMetA : 492 | !:!!|||! !! !::!|||..!||||||!!!|||||||||:!!:!!!!:|||| tGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisGluMetA 1222450 : GCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATGAGATGA : 1222394 493 : snMetGluAsnTyrGlyLys >>>> Target Intron 1 >>>> AlaValL : 501 ||!!:|||!:!!:!|||! ! 320 bp |||:!!| snIleGluSerPheGlyIle++ ++AlaIleL 1222393 : ACATCGAGAGTTTCGGAATAgt.........................aggCTATTA : 1222047 502 : ysAlaCysMetSerTyrPheThrMetPheLeuSerMetArgGlu : 515 ||||||||||||||||||||! !||||||||||||:!!!:!||| ysAlaCysMetSerTyrPheMetMetPheLeuSerLeuLysGlu 1222046 : AAGCGTGCATGTCCTATTTCATGATGTTCCTGTCGTTGAAAGAA : 1222003 vulgar: gi|805752310|ref|XP_012144545.1| 454 515 . KQ414851.1 1222505 1222002 - 179 M 44 132 5 0 2 I 0 316 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222003 1222505 179 - . gene_id 11 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1222374 1222505 . - . KQ414851.1 exonerate:protein2genome:local exon 1222374 1222505 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1222372 1222373 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222054 1222373 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1222054 1222055 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1222003 1222053 . - . KQ414851.1 exonerate:protein2genome:local exon 1222003 1222053 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222003 1222505 179 - . alignment_id 11 ; Query gi|805752310|ref|XP_012144545.1| ; Align 1222506 455 132 ; Align 1222054 499 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 178 Query range: 132 -> 225 Target range: 1228758 -> 1228407 133 : GlnIleLeuMetAlaValGlyLysProHisGluMetLeuArgPheSerLeuPhePh : 151 ||||||:!!:!:|||:!!! !!:!||| !||| :!!|||!:!|||:!! !!.! GlnIleMetLeuAlaLeuAspArgProSerGluAlaIleArgTyrSerValValLe 1228758 : CAGATAATGCTCGCCCTGGATAGACCGAGCGAAGCTATTAGATATTCTGTGGTTCT : 1228704 152 : eLeuCysGluHisIleHisLeuTyrIleIleSerLeuPheGlyGlnIleIleLeuA : 170 ! ! !!! !!!..!!||||||!:!|||||||||||| !||||||! !:!!:!!: uGlyGlyAlaGlnPheHisLeuPheIleIleSerLeuProGlyGlnThrLeuValA 1228703 : TGGAGGTGCGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACACTCGTGG : 1228647 171 : snHisSerAlaIleLeu{Al} >>>> Target Intron 1 >>>> {a}Glu : 177 !!|||!!!.!!!!:|||{.!} 72 bp {!} spHisCysThrMetLeu{Th}+- +-{r}Leu 1228646 : ATCATTGTACCATGCTA{AC}ga.........................at{T}CTT : 1228554 178 : ArgIleTyrSerSerAspTrpTyrGluIleProIleLysPheGlnLysLeuLeuCy : 196 !! !||||||||| ||||||:!!:!! !! !|||||||||::!:!!:!!! TyrArgTyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTy 1228553 : TACAGATACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTA : 1228497 197 : sIleMetIleLeuArgCysSerLysProValAsnLeuAsnAlaGlyGlyLeuTyrA : 215 !!!:||| !:!!|||..! !|||||| !! !|||!.!|||||||||||||||! rMetMetGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrG 1228496 : CATGATGCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACG : 1228440 216 : spMetAsnMetGluAsnTyrGlyLysIleLys : 225 !:|||||||||||||||!:!!.!!!.:!!::: luMetAsnMetGluAsnPheAlaAsnValArg 1228439 : AAATGAACATGGAGAACTTTGCAAACGTTCGT : 1228408 vulgar: gi|805752310|ref|XP_012144545.1| 132 225 . KQ414851.1 1228758 1228407 - 178 M 43 129 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228408 1228758 178 - . gene_id 12 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1228628 1228758 . - . KQ414851.1 exonerate:protein2genome:local exon 1228628 1228758 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228626 1228627 . - . intron_id 1 ; splice_site "GA" KQ414851.1 exonerate:protein2genome:local intron 1228556 1228627 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1228556 1228557 . - . intron_id 0 ; splice_site "AT" KQ414851.1 exonerate:protein2genome:local cds 1228408 1228555 . - . KQ414851.1 exonerate:protein2genome:local exon 1228408 1228555 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228408 1228758 178 - . alignment_id 12 ; Query gi|805752310|ref|XP_012144545.1| ; Align 1228759 133 129 ; Align 1228555 177 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 173 Query range: 2 -> 74 Target range: 1243812 -> 1243599 3 : ProThrLeuAspLeuIleIleProLeuAsnGluThrArgProLysGluPheLeuPh : 21 |||! !||||||:!!:!! !|||||||||||||||||| !!::! ! :::.. ProIleLeuAspValValSerProLeuAsnGluThrArgSerArgIleGluValIl 1243812 : CCAATATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaat : 1243758 22 : eLysAlaSerTyrAlaPheIleGluValAspAspHisPheIleSerValPheLeuH : 40 .||| ...||| !||| !!::::::: :::||| |||:::::::!!: eLysLeuGlnTyrLeuPhe---AspMetGluLysAsnPheTyrSerLeuTyrValT 1243757 : aaaattgcaataccTGTTC---GACAtggagaagaatttttattcattatacGTCT : 1243704 41 : isLeuSerTrpIleAlaIleValThrValTyrCysIleAlaIleValAspSerLeu : 58 !! !.!!||| !:!!.!!:!!|||:!! !||| !! !:!!|||:!!||| yrThrGlyTrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeu 1243703 : ACACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTA : 1243650 59 : TyrIleLeuIleIleHisHisValCysGlyLeuPheAspValCysGly : 74 |||:!::!!||||||||||||..!||||||||||||! !||||||||| TyrValValIleIleHisHisThrCysGlyLeuPheAlaValCysGly 1243649 : TATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: gi|805752310|ref|XP_012144545.1| 2 74 . KQ414851.1 1243812 1243599 - 173 M 25 75 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243812 173 - . gene_id 13 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243812 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243812 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243812 173 - . alignment_id 13 ; Query gi|805752310|ref|XP_012144545.1| ; Align 1243813 3 75 ; Align 1243738 29 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 164 Query range: 2 -> 74 Target range: 1240037 -> 1239821 3 : ProThrLeuAspLeuIleIleProLeuAsnGluThrArgProLysGluPheLeuPh : 21 ||| ||||||:!!:!!! !|||||||||||||||||| !!:::::: :::|| ProLeuLeuAspIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIlePh 1240037 : cctcttctggACATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatatt : 1239983 22 : eLysAlaSerTyrAlaPheIleGluValAspAspHisPheIleSerValPheLeuH : 40 ||||...::!||| !.!!|||!!: !|||!!:!!. !:!:! !..!!:!!!!| eLysValAsnTyrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPheH 1239982 : caaagttaaTTACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTTC : 1239926 41 : isLeuSerTrpIleAlaIleValThrValTyrCysIleAlaIleValAspSerLeu : 58 |||||||||||! !.!!|||..! !! ! ! !:!: !! ! !!!:! !:!! isLeuSerTrpThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIle 1239925 : ACTTGTCTTGGACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATA : 1239872 59 : TyrIleLeuIleIleHisHisValCysGlyLeuPheAspValCysGly : 74 |||:!!|||:!!|||||||||..! !!|||||||||! !|||..!||| TyrValLeuLeuIleHisHisThrSerGlyLeuPheAlaValAlaGly 1239871 : TACGTCCTTCTTATTCATCATACCAGCGGTCTGTTTGCTGTGGCTGgg : 1239822 vulgar: gi|805752310|ref|XP_012144545.1| 2 74 . KQ414851.1 1240037 1239821 - 164 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240037 164 - . gene_id 14 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239822 1240037 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240037 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240037 164 - . alignment_id 14 ; Query gi|805752310|ref|XP_012144545.1| ; Align 1240038 3 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 161 Query range: 438 -> 515 Target range: 1242844 -> 1242521 439 : PheGlyGlnIleIleLeuAsnHisSerLysThrLeuAlaGluArgIleTyrSerCy : 457 ||| ...::! !|||||| ||| !.!! !|||!:!! PheGlnSerValProLeuAsnIlePhePheThrAsnPheThrAsnArgTyrAsnSe 1242844 : tttcaatcagtTCCActcaatatattttttactaattttaccAATAGATATAACTC : 1242790 458 : sAsnTrpTyrGlyIleProIleLysPheGlnLysLeuLeuCysIleMetIleLeuA : 476 ! |||||| !! !|||:!: !.!!||||||:!!||| !|||:!: !:!!| rMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIleValGlnIleA 1242789 : GATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATATAGTACAAATAA : 1242733 477 : rgCysSerLysProAlaIleLeuSerAlaGlyGlyLeuTyrAspMetAsnMetGlu : 494 ||! !.!!||||||..!! !||| !|||||||||||||||!!:||||||!!:||| rgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluMetAsnIleGlu 1242732 : GGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAATGAACATTGAG : 1242679 495 : AsnTyrGlyLys >>>> Target Intron 1 >>>> AlaValLysAlaCys : 503 |||!:!|||..! 92 bp ..! !!|||.!!||| AsnPheGlySer++ ++ThrPheLysThrCys 1242678 : AATTTTGGATCAgt.........................agacTTTCAAAACCTGC : 1242560 504 : MetSerTyrPheThrMetPheLeuSerMetArgGlu : 515 !!:|||||||||||||||.!!||||||.!.!:!!!: IleSerTyrPheThrMetLeuLeuSerPheLysAsp 1242559 : ATATCGTACTTTACGATGCTCTTATCATTCAAAGAC : 1242522 vulgar: gi|805752310|ref|XP_012144545.1| 438 515 . KQ414851.1 1242844 1242521 - 161 M 60 180 5 0 2 I 0 88 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242522 1242844 161 - . gene_id 15 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1242665 1242844 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242844 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242522 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242522 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242522 1242844 161 - . alignment_id 15 ; Query gi|805752310|ref|XP_012144545.1| ; Align 1242845 439 180 ; Align 1242573 499 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 137 Query range: 179 -> 226 Target range: 1242796 -> 1242655 180 : TyrSerSerAspTrpTyrGluIleProIleLysPheGlnLysLeuLeuCysIleMe : 198 |||!:!||| ||||||:!!! !|||:!: !.!!||||||:!!||| !|||:! TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIleVa 1242796 : TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATATAGT : 1242742 199 : tIleLeuArgCysSerLysProValAsnLeuAsnAlaGlyGlyLeuTyrAspMetA : 217 : !:!!|||! !.!!|||||| !!!.||| |||||||||||||||!!:|||| lGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluMetA 1242741 : ACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAATGA : 1242685 218 : snMetGluAsnTyrGlyLysIleLysIle : 226 ||!!:||||||!:!|||..!:!!:::::: snIleGluAsnPheGlySerValArgVal 1242684 : ACATTGAGAATTTTGGATCAGTACgtgtt : 1242656 vulgar: gi|805752310|ref|XP_012144545.1| 179 226 . KQ414851.1 1242796 1242655 - 137 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242656 1242796 137 - . gene_id 16 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1242656 1242796 . - . KQ414851.1 exonerate:protein2genome:local exon 1242656 1242796 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242656 1242796 137 - . alignment_id 16 ; Query gi|805752310|ref|XP_012144545.1| ; Align 1242797 180 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 134 Query range: 454 -> 496 Target range: 1228545 -> 1228419 455 : TyrSerCysAsnTrpTyrGlyIleProIleLysPheGlnLysLeuLeuCysIleMe : 473 ||||||! !!..|||||| !:!! !! !|||||||||::!:!!:!!! !!!:|| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 474 : tIleLeuArgCysSerLysProAlaIleLeuSerAlaGlyGlyLeuTyrAspMetA : 492 | !:!!|||..! !||||||..!||||||!!!|||||||||||||||!!:|||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 493 : snMetGluAsnTyr : 496 |||||||||||!:! snMetGluAsnPhe 1228433 : ACATGGAGAACTTT : 1228420 vulgar: gi|805752310|ref|XP_012144545.1| 454 496 . KQ414851.1 1228545 1228419 - 134 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228420 1228545 134 - . gene_id 17 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228420 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228420 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228420 1228545 134 - . alignment_id 17 ; Query gi|805752310|ref|XP_012144545.1| ; Align 1228546 455 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 179 -> 222 Target range: 1222505 -> 1222376 180 : TyrSerSerAspTrpTyrGluIleProIleLysPheGlnLysLeuLeuCysIleMe : 198 |||:!!||| ! |||||||||:!!|||:!!||| |||||||||:!!! !! || TyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTyrThrMe 1222505 : TACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTACACGAT : 1222451 199 : tIleLeuArgCysSerLysProValAsnLeuAsnAlaGlyGlyLeuTyrAspMetA : 217 | !:!!|||! !! !::!||| !! |||!..|||||||||:!!:!!!!:|||| tGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisGluMetA 1222450 : GCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATGAGATGA : 1222394 218 : snMetGluAsnTyrGly : 222 ||!!:|||!:!!:!||| snIleGluSerPheGly 1222393 : ACATCGAGAGTTTCGGA : 1222377 vulgar: gi|805752310|ref|XP_012144545.1| 179 222 . KQ414851.1 1222505 1222376 - 124 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222377 1222505 124 - . gene_id 18 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1222377 1222505 . - . KQ414851.1 exonerate:protein2genome:local exon 1222377 1222505 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222377 1222505 124 - . alignment_id 18 ; Query gi|805752310|ref|XP_012144545.1| ; Align 1222506 180 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 407 -> 483 Target range: 1238825 -> 1238370 408 : GlnIleLeuMetHisMetAspGlnProLeuAspSerAlaArgPheIleLeuPhePh : 426 |||! !:!! !:!!!!:|||.!.||| !! :!! !||| ! ! ! !!!: GlnThrValGlyAsnIleAspAspProThrValAlaLeuArgAsnAlaThrValTr 1238825 : CAGACAGTGGGGAATATAGACGATCCGACAGTAGCTTTGAGAAACGCTACGGTCTG : 1238771 427 : eValCysSerHisIleHisLeuTyrIleIleSerLeuPheGlyGlnIleIleLeuA : 445 :! !..!!.!!!.|||||||||!:!|||||||||:!! !||||||:!::!!:!!: pGlyAlaLysGlnIleHisLeuPheIleIleSerIleProGlyGlnValLeuIleA 1238770 : GGGGGCTAAGCAAATTCACCTGTTCATCATCAGTATACCTGGACAGGTGCTTATAG : 1238714 446 : snHisSerLysThrLeuAlaGluArg{Il} >>>> Target Intron 1 >>> : 454 !!|||!!! ! !|||:!!.!. !{||} 227 bp spHisCysValGluLeuSerAsnAsp{Il}+- 1238713 : ATCATTGTGTGGAGCTGTCAAACGAC{AT}ga........................ : 1238683 455 : > {e}TyrSerCysAsnTrpTyrGlyIleProIleLysPheGlnLysLeuLeuCy : 471 {|}||||||! !!!.||||||..!! ! !!!::!! !:!!|||:!!||| ++{e}TyrSerSerLysTrpTyrAsnAsnGlyMetGluAlaLysLysIleLeuGl 1238682 : .ag{A}TACTCCTCCAAATGGTACAATAACGGAATGGAAGCTAAGAAAATACTTCA : 1238409 472 : sIleMetIleLeuArgCysSerLysProAlaIleLeu : 483 :!!||| !! !|||..!|||||||||..!|||||| nValMetGlnGlnArgAlaSerLysProCysIleLeu 1238408 : AGTAATGCAACAGAGAGCTAGCAAACCGTGTATATTA : 1238371 vulgar: gi|805752310|ref|XP_012144545.1| 407 483 . KQ414851.1 1238825 1238370 - 107 M 46 138 S 0 2 5 0 2 I 0 223 3 0 2 S 1 1 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1238371 1238825 107 - . gene_id 19 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1238686 1238825 . - . KQ414851.1 exonerate:protein2genome:local exon 1238686 1238825 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1238684 1238685 . - . intron_id 1 ; splice_site "GA" KQ414851.1 exonerate:protein2genome:local intron 1238459 1238685 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1238459 1238460 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1238371 1238458 . - . KQ414851.1 exonerate:protein2genome:local exon 1238371 1238458 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1238371 1238825 107 - . alignment_id 19 ; Query gi|805752310|ref|XP_012144545.1| ; Align 1238826 408 138 ; Align 1238458 455 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759611|ref|XP_003699993.2| PREDICTED: uncharacterized protein LOC100882905 [Megachile rotundata] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 433 Query range: 0 -> 203 Target range: 4444 -> 1787 1 : MetGluGlyMetGlnThrTyrCysLysAsnAlaLysValArgGluArgAlaIleLeuGlnTr : 21 !!:|||! !|||:!!! !! !|||:!!!..|||||| ! !||||||! !:!!!!!||| ! IleGluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheGlnAr 4444 : ATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGACGTCTTCCAACG : 4384 22 : pTyrValAsnGlnPheSerThrPheTyrGlyValSerAlaThrTrpPheTyrThrThrAlaI : 42 |||||||||:!! ||| |||||| ... !!:!!:!!||||||||| !||||||| gTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheTyrLeuThrAlaI 4383 : ATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTTACTTAACAGCAA : 4321 43 : leValValIleLeuGlyThrPhePheSerSerHisProPheProThrAsnAlaValTyrPro : 62 ||:!!:!!:!!||||||!:!.!..!!! !||| !!||||||||||||||||||||||||||| leIleMetValLeuGlySerLeuLeuIleSerAspProPheProThrAsnAlaValTyrPro 4320 : TAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACCAACGCAGTATATCCA : 4261 63 : IleAlaValAspTyrGlnProLeuMetSerIleValPheLeuHisGlnSerValIleGlyLe : 83 .!! !!|||:!!!:!:!!||||||! ||||||:!!|||:!!||||||||| !!:!!|||:! PheProValAsnPheGluProLeuArgSerIleIlePheMetHisGlnSerPheValGlyIl 4260 : TTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCACCAATCGTTCGTTGGCAT : 4198 84 : uGlnPheSerAlaSerValCysValSerValLeuCysAlaLeuLeuLeuLeuPheAlaSerA : 104 !|||! !:!!||| !!.! !!:!!!:!||||||! !||||||||||||||||||.!!!!!| eGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeuLeuLeuLeuPheThrThrA 4197 : ACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTGTTATTGCTATTCACTACAG : 4135 105 : laArgPheGluIleLeuLysMetGluLeuArgGluValLysLysProSerGluLeuIleLys : 124 ||||||||||||||||| !! !|||||||||.!.|||!!. ! !..! !||||||||| laArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAspIleGluThrLeuIleLys 4134 : CtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGATATCGAAACACTGATTAAG : 4075 125 : CysMetGluLysTyrTyrThrValArg{Ar} >>>> Target Intron 1 >>>> {g : 134 !!|||:!!||||||! |||||||||{||} 872 bp {| SerMetLysLysTyrSerThrValArg{Ar}++ ++{g 4074 : AGTATGAAAAAGTATTCGACTGTGCGG{AG}gt.........................ag{A : 3171 135 : }TyrAlaCysAspValValAsnThrIleLysLeuLeuProLeu{Cy} >>>> Target I : 149 }|||||||||...:!!..! !.!:!! !|||||| !|||{||} 1173 }TyrAlaCysSerLeuThrLeuAsnValLeuLeuLeuAspLeu{Cy}++ 3170 : }TACGCTTGCTCATTAACATTAAACGTCTTATTGTTAGATctc{tg}gt............. : 3124 150 : ntron 2 >>>> {s}ThrValIleLeuCysGlyValIleLeuValPheCysGlyIleLys : 164 bp {|} ::: ::: |||||| :::... !:!!::! +-{s}GluIleLysIleValGlyValGlnLysIleMetAsnTyrValArg 3123 : ............aa{c}gaaataaaaattgttggagttcaaaaaataatgaacTATGTTCGA : 1910 165 : LeuIleGln<->ProGlnProPheThrSerArgCysGlnTyrLeuSerIleValTrpThrAl : 184 !|||:!! !|||||||||.!! !!:!..!|||!:!|||!!!:!: ! ! ||||| ThrIleGlu***LysGlnProPheAlaValLysAlaGlnPheLeuThrValSerGlyThrAl 1909 : ACGATTGAATAGAAACAACCGTTCGCTGTGAAAGCTCAGTTTCTTACTGTGAGTGGAACCGC : 1847 185 : aLeuValGluValPheValCysAlaTrpProAlaAspHisLeuLeuAspIleLysSer : 203 ||||:!!||||||.!!:!!|||:!! |||||||||||||||:!!|||!!: !||| aLeuLeuGluValLeuMetCysSerLeuProAlaAspHisLeuIleAspMetValSer 1846 : TTTGCTGGAAGTGCTTATGTGTTCACTACCAGCTGACCATTTGATAGATATGGTAAGT : 1788 vulgar: gi|805759611|ref|XP_003699993.2| 0 203 . LHQN01020543.1 4444 1787 - 433 M 133 399 S 0 2 5 0 2 I 0 868 3 0 2 S 1 1 M 14 42 S 0 2 5 0 2 I 0 1169 3 0 2 S 1 1 M 18 54 G 0 3 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 1788 4444 433 - . gene_id 1 ; sequence gi|805759611|ref|XP_003699993.2| ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 4044 4444 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4044 4444 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 4042 4043 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 3172 4043 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 3172 3173 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 3127 3171 . - . LHQN01020543.1 exonerate:protein2genome:local exon 3127 3171 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 3125 3126 . - . intron_id 2 ; splice_site "gt" LHQN01020543.1 exonerate:protein2genome:local intron 1954 3126 . - . intron_id 2 LHQN01020543.1 exonerate:protein2genome:local splice3 1954 1955 . - . intron_id 1 ; splice_site "aa" LHQN01020543.1 exonerate:protein2genome:local cds 1788 1953 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1788 1953 . - . insertions 3 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 1788 4444 433 - . alignment_id 1 ; Query gi|805759611|ref|XP_003699993.2| ; Align 4445 1 399 ; Align 3171 135 42 ; Align 1953 150 54 ; Align 1896 168 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 4 -> 74 Target range: 32542 -> 32749 5 : LeuAspLeuIleIleProLeuAsnGluThrArgProLysGluPheLeuPheLysAlaSer : 24 :!!|||:!!||| ||||||||||||:!!|||! ! ! ! !.!.! !!:! !.!..! IleAspValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGlu 32543 : ATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAA : 32600 25 : TyrAlaPheIleGluValAspAspHisPheIleSerValPheLeuHisLeuSerTrpIle : 44 ||| |||:!!!!: ... :::|||::: !:!! ||||||:!! ! !!! ! Tyr---PheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThr 32601 : TAT---TTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACC : 32657 45 : AlaIleValThrValTyrCysIleAlaIleValAspSerLeuTyrIleLeuIleIleHis : 64 !.!! !:!! !:!! ! !.!! !|||||||||::::::|||......::: ! ValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPhe 32658 : GTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTC : 32717 65 : HisValCysGlyLeuPheAspValCysGly : 74 |||||||||!.! !|||:!!:!! !||| HisValCysAlaLysPheAsnIleLeuGly 32718 : CACGTTTGCGCCAAATTCAATATTCTCGGG : 32749 vulgar: gi|805752310|ref|XP_012144545.1| 4 74 . KQ415081.1 32542 32749 + 101 M 21 63 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32543 32749 101 + . gene_id 1 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32543 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32543 32749 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32543 32749 101 + . alignment_id 1 ; Query gi|805752310|ref|XP_012144545.1| ; Align 32543 5 63 ; Align 32606 27 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 0 -> 104 Target range: 5023 -> 5332 1 : MetAsnProThrLeuAspLeuIleIleProLeuAsnGluThrArgProLysGluPheLeuPh : 21 :!!:::|||! !||||||:!!:!!!!:|||||||||||||||||| !!::! !|||:!!!: ValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTy 5024 : GTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTA : 5084 22 : eLysAlaSerTyrAlaPheIleGluValAspAspHisPheIleSerValPheLeuHisLeuS : 42 ! !||| ||| !|||:!!!!:! !||| ! :!! ! !! !:!! ! !|||:!!! rProAla---TyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetT 5085 : TCCAGCT---TACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGT : 5144 43 : erTrpIleAlaIleValThrValTyrCysIleAlaIleValAspSerLeuTyrIleLeuIle : 62 ! :!!!.!:!!:!! !:!!! ! !.!!..! ! !|||:!! !|||:!:! ! ! yrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAla 5145 : ATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCC : 5204 63 : IleHisHisValCysGlyLeuPheAspValCysGlyTyrGlnIleGluThrAlaThrGlnAs : 83 :!:!!.|||!.!|||||||||!!.! !:!!...|||!! !:!!:!! ! ! !..!!! ValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGl 5205 : GTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGA : 5267 84 : pProGluLeuArgTyrAspGlnPheLysGlnCysValMetThrHisHisLysAlaLeuMetL : 104 : !! !!!! !||| .!.||| ! ! !:!:.!!.!.:!!!!...!|||:!!: uAsnGlyPheLeuTyrArgAsnPheValGlyPheCysLeuAlaGluAsnAsnCysLeuLeuV 5268 : AAATGGTTTTCTTTATAGAAATTTCGTTGGCTTTTGTTTAGCTGAAAACAATTGTCTGTTGG : 5330 105 : eu : 104 !! al 5331 : TA : 5332 vulgar: gi|805752310|ref|XP_012144545.1| 0 104 . LHQN01025741.1 5023 5332 + 127 M 23 69 G 1 0 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5024 5332 127 + . gene_id 1 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5024 5332 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5024 5332 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 5024 5332 127 + . alignment_id 1 ; Query gi|805752310|ref|XP_012144545.1| ; Align 5024 1 69 ; Align 5093 25 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 269 -> 349 Target range: 5005 -> 5242 270 : PheIleTyrIleProLeuIleAsnProThrLeuAspLeuIleIleProLeuAsnGluThrAr : 290 |||!!:! !:!:|||!!!:!::::|||! !||||||:!!:!!!!:||||||||||||||||| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5006 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5066 291 : gProLysGluGlnLeuPheGlyValCysTyrValPheIleAsnProAspAspTyrPheThrA : 311 | !!::! ! :!!!:! !..!||| !|||:!!:!! !||| ! ||| ! ! gAlaArgLeuPheValTyr---ProAlaTyrTyrPheValAspGluAspLysTyrHisTyrL 5067 : AGCACGGTTGTTCGTCTAT---CCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACT : 5126 312 : laValPheLeuHisMetGlyTrpThrThrTrpValThrValTyrAsnIleIleThrValAsp : 331 !:!! ! !|||||| ! ..!..! :!! !:!!! ! !.!! !.!! !||| euIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAsp 5127 : TGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGAT : 5186 332 : SerLeuTyrIleLeuIleIleHisHisValCysGlyLeuPheAspValCysGly : 349 :!! !|||:!:! ! !:!:!!.|||!.!|||||||||!!.! !:!!...||| AlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5187 : GCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5242 vulgar: gi|805752310|ref|XP_012144545.1| 269 349 . LHQN01025741.1 5005 5242 + 121 M 27 81 G 1 0 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5006 5242 121 + . gene_id 2 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5006 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5006 5242 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 5006 5242 121 + . alignment_id 2 ; Query gi|805752310|ref|XP_012144545.1| ; Align 5006 270 81 ; Align 5087 298 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 0 -> 104 Target range: 5639 -> 5330 1 : MetAsnProThrLeuAspLeuIleIleProLeuAsnGluThrArgProLysGluPheLeuPh : 21 :!!:::|||! !||||||:!!:!!!!:|||||||||||||||||| !!::! !|||:!!!: ValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTy 5639 : GTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTA : 5579 22 : eLysAlaSerTyrAlaPheIleGluValAspAspHisPheIleSerValPheLeuHisLeuS : 42 ! !||| ||| !|||:!!!!:! !||| ! :!! ! !! !:!! ! !|||:!!! rProAla---TyrTyrPheValAspGluAspLysTyrArgTyrLeuIleValGlyHisMetT 5578 : TCCAGCT---TACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGT : 5519 43 : erTrpIleAlaIleValThrValTyrCysIleAlaIleValAspSerLeuTyrIleLeuIle : 62 ! :!!!.!:!!:!! !:!!! ! !.!!..! ! !|||:!! !|||:!:! ! ! yrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAla 5518 : ATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCC : 5459 63 : IleHisHisValCysGlyLeuPheAspValCysGlyTyrGlnIleGluThrAlaThrGlnAs : 83 :!:!!.|||!.!|||||||||!!.! !:!!...|||!! !:!!:!! ! ! !..!!! ValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGl 5458 : GTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGA : 5396 84 : pProGluLeuArgTyrAspGlnPheLysGlnCysValMetThrHisHisLysAlaLeuMetL : 104 : !! !!!! !||| .!.||| ! ! !:!:.!!.!.:!!!!...!|||:!!: uAsnGlyPheLeuTyrArgAsnPheValGlyPheCysLeuAlaGluAsnAsnCysLeuLeuV 5395 : AAATGGTTTTCTTTATAGAAATTTCGTTGGCTTTTGTTTAGCTGAAAACAATTGTCTTTTGG : 5333 105 : eu : 104 !! al 5332 : TA : 5331 vulgar: gi|805752310|ref|XP_012144545.1| 0 104 . LHQN01028732.1 5639 5330 - 125 M 23 69 G 1 0 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5331 5639 125 - . gene_id 1 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5331 5639 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5331 5639 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5331 5639 125 - . alignment_id 1 ; Query gi|805752310|ref|XP_012144545.1| ; Align 5640 1 69 ; Align 5571 25 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752310|ref|XP_012144545.1| PREDICTED: uncharacterized protein LOC100878875 isoform X1 [Megachile rotundata] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 269 -> 349 Target range: 5657 -> 5420 270 : PheIleTyrIleProLeuIleAsnProThrLeuAspLeuIleIleProLeuAsnGluThrAr : 290 |||!!:! !:!:|||!!!:!::::|||! !||||||:!!:!!!!:||||||||||||||||| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5657 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5597 291 : gProLysGluGlnLeuPheGlyValCysTyrValPheIleAsnProAspAspTyrPheThrA : 311 | !!::! ! :!!!:! !..!||| !|||:!!:!! !||| ! ||| ! ! gAlaArgLeuPheValTyr---ProAlaTyrTyrPheValAspGluAspLysTyrArgTyrL 5596 : AGCACGGTTGTTCGTCTAT---CCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACT : 5537 312 : laValPheLeuHisMetGlyTrpThrThrTrpValThrValTyrAsnIleIleThrValAsp : 331 !:!! ! !|||||| ! ..!..! :!! !:!!! ! !.!! !.!! !||| euIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAsp 5536 : TGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGAT : 5477 332 : SerLeuTyrIleLeuIleIleHisHisValCysGlyLeuPheAspValCysGly : 349 :!! !|||:!:! ! !:!:!!.|||!.!|||||||||!!.! !:!!...||| AlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5476 : GCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5421 vulgar: gi|805752310|ref|XP_012144545.1| 269 349 . LHQN01028732.1 5657 5420 - 119 M 27 81 G 1 0 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5657 119 - . gene_id 2 ; sequence gi|805752310|ref|XP_012144545.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5657 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5657 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5657 119 - . alignment_id 2 ; Query gi|805752310|ref|XP_012144545.1| ; Align 5658 270 81 ; Align 5577 298 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805819498|ref|XP_012149882.1| PREDICTED: uncharacterized protein LOC100884046 [Megachile rotundata] Target: LHQN01049752.1 Habropoda laboriosa contig49752, whole genome shotgun sequence Model: protein2genome:local Raw score: 232 Query range: 96 -> 209 Target range: 54 -> 399 97 : GluAlaIleLeuCysAspMetLeuSerThrIleGluGluGluCysLysLysTyrAlaPheIleA : 118 .!.::!:!!||| !!|||!!:|||||||||!!:||||||!!:|||:!!||||||||| !:!!| HisSerValLeuSerAspIleLeuSerThrMetGluGluAspCysGlnLysTyrAlaAlaValA 55 : CACAGCGTACTTAGTGACATTTTATCAACCATGGAAGAGGATTGTCAGAAATATGCTGCTGTAG : 118 119 : spLysThrGlyLeuIleLeuLysThrIleHisValSerTyrArgLeuThrThrSerIleIleVa : 139 ||! !!.! !|||!!:! !|||||| !!!.:::|||::: ||||||:::! !|||!!: spIleAsnLysLeuMetSerLysThrGlyGlnLeuSerPheTyrLeuThrSerIleIleMetSe 119 : ATATAAATAAGTTGATGTCAAAAACCGGACAgctatctttttatttaacaagcATTATTATGTC : 181 140 : lLeuTyrValMetValAlaIleIleHisIleIleGlyAsnAlaThrSerAlaHisSerAsnGlu : 160 !! !|||:!!:!: !||| !.!!:!!|||! !|||!.! ! ...:::||| rSerTyrMetValSerAlaAlaPheTyrIleThrGlyThrIleGlyPheGlnGluAsnAsnAla 182 : TTCGTATATGGTATCTGCAGCATTTTACATAACTGGTACTATTGgatttcaagaaaataatgCT : 244 161 : ThrTyrSer<-><->LeuIleLeuLysMetAspLeuProPheGluIleAsnLysSerProAsnT : 180 :!! ||| |||:!!|||||||||||||||||||||! !! !!:!:!!|||||||||| SerValSerArgGluLeuLeuLeuLysMetAspLeuProPheGlyThrSerGluSerProAsnT 245 : TCAGTATCTAGGGAGCTCCTTCTGAAAATGGATTTGCCTTTTGGGACCAGCGAATCGCCGAATT : 310 181 : yrGluLeuValLeuThrAlaGlnIlePheHisGlnThrTyrThrAlaPheThrPheSerValTy : 201 |||||||||||:!!|||.!!|||:!!.!! !!!...!! .!!|||!!.||||||.!!|||!: yrGluLeuValValThrThrGlnValLeuIleHisValSerAlaAlaLeuThrPheGlyValPh 311 : ACGAACTTGTAGTAACTACACAAGTCCTTATTCACGTATCAGCGGCCTTAACATTCGGTGTATT : 373 202 : rSerAlaLeuIleLeuMetValVal : 209 !|||||||||:!!|||||||||||| eSerAlaLeuLeuLeuMetValVal 374 : CAGTGCTCTTCTCTTAATGGTGGTA : 399 vulgar: gi|805819498|ref|XP_012149882.1| 96 209 . LHQN01049752.1 54 399 + 232 M 67 201 G 0 6 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049752.1 exonerate:protein2genome:local gene 55 399 232 + . gene_id 1 ; sequence gi|805819498|ref|XP_012149882.1| ; gene_orientation . LHQN01049752.1 exonerate:protein2genome:local cds 55 399 . + . LHQN01049752.1 exonerate:protein2genome:local exon 55 399 . + . insertions 6 ; deletions 0 LHQN01049752.1 exonerate:protein2genome:local similarity 55 399 232 + . alignment_id 1 ; Query gi|805819498|ref|XP_012149882.1| ; Align 55 97 201 ; Align 262 164 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805815197|ref|XP_012148421.1| PREDICTED: uncharacterized protein LOC100884043 isoform X1 [Megachile rotundata] Target: KQ414573.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold16, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 374 Query range: 98 -> 217 Target range: 640301 -> 639748 99 : IleLeuArgTyrArgLeuGluAsnCysGlyGluAsnHisSerMetAspIleLysIleH : 118 :!:!!!||| !:!|||||||||! !! !|||:!! !!!!!!!::!!:!::!!:!:| LeuPheArgValLysLeuGluAsnPheValGluAspAspThrIleAsnValGluLeuH 640301 : CTGTTTAGAGTGAAACTAGAAAATTTCGTGGAAGATGATACCATAAACGTGGAACTGC : 640244 119 : isProAspLysLysArgAspIleTrpTyrGlnAspAlaArgSerCysValLeuLeuHi : 137 ||! !:!!|||:::! !|||! !|||||||||:!! !|||..!|||||||||||||| isLeuAsnLysArgIleAspArgTrpTyrGlnAsnPheArgGluCysValLeuLeuHi 640243 : ATCTCAACAAGCGCATAGACAGATGGTATCAAAATTTCAGAGAGTGTGTACTCTTGCA : 640187 138 : sArgHisIleIle{Gl} >>>> Target Intron 1 >>>> {u}PheAlaAsp : 145 |!:!|||||||||{||} 115 bp {|}||||||:!! sLysHisIleIle{Gl}++ ++{u}PheAlaAsn 640186 : TAAGCACATAATC{GA}gt.........................ag{A}TTTGCTAAT : 640048 146 : IleIleGluAsnAlaAsnThrMetSerTyrPhePheGlnLeuGlyLeuAsnMetIleC : 165 :!!:!!|||.!.|||||||||! !||||||!!.||||||||||||!!!|||||||||| LeuLeuGluGluAlaAsnThrThrSerTyrLeuPheGlnLeuGlyPheAsnMetIleC 640047 : CTACTTGAGGAAGCAAATACCACGTCTTATTTGTTCCAGTTGGGGTTTAACATGATTT : 639988 166 : ysValSerPheThrGlnPheGln >>>> Target Intron 2 >>>> AlaIle : 174 ||||||||||||||||||||||| 81 bp .!!:!! ysValSerPheThrGlnPheGln++ ++ThrVal 639987 : GCGTAAGCTTCACACAGTTTCAGgt.........................agACGGTA : 639880 175 : ValHisIleSerThrLeuAsnGlnPheLeuArgTyrValSerLeuThrIleSerLeuL : 194 :!!:!!:!!..! ! ! !:!! !|||||||||||||||:!!||||||!!!|||| IleAsnLeuGlnAspThrProLysAlaLeuArgTyrValSerValThrIleCysLeuL 639879 : ATAAATTTACAAGATACACCCAAGGCTCTCAGATATGTTTCAGTCACGATTTGCTTGT : 639820 195 : euCysAspLeuLeuPheValSerTrpProGlyGlnArgLeuIleAspTyrThrGluAr : 213 ||||||||||||||||||||||||||||||||||||||||| !|||||||||||||| euCysAspLeuLeuPheValSerTrpProGlyGlnArgLeuSerAspTyrThrGluAr 639819 : TATGCGACCTTTTGTTTGTAAGCTGGCCAGGACAACGATTGTCCGATTATACTGAACG : 639763 214 : gIlePheThrTyr : 217 ||||||| !||| gIlePheGluTyr 639762 : CATCTTCGAATAT : 639749 vulgar: gi|805815197|ref|XP_012148421.1| 98 217 . KQ414573.1 640301 639748 - 374 M 43 129 S 0 2 5 0 2 I 0 111 3 0 2 S 1 1 M 30 90 5 0 2 I 0 77 3 0 2 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414573.1 exonerate:protein2genome:local gene 639749 640301 374 - . gene_id 1 ; sequence gi|805815197|ref|XP_012148421.1| ; gene_orientation + KQ414573.1 exonerate:protein2genome:local cds 640171 640301 . - . KQ414573.1 exonerate:protein2genome:local exon 640171 640301 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local splice5 640169 640170 . - . intron_id 1 ; splice_site "GT" KQ414573.1 exonerate:protein2genome:local intron 640056 640170 . - . intron_id 1 KQ414573.1 exonerate:protein2genome:local splice3 640056 640057 . - . intron_id 0 ; splice_site "aG" KQ414573.1 exonerate:protein2genome:local cds 639965 640055 . - . KQ414573.1 exonerate:protein2genome:local exon 639965 640055 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local splice5 639963 639964 . - . intron_id 2 ; splice_site "GT" KQ414573.1 exonerate:protein2genome:local intron 639884 639964 . - . intron_id 2 KQ414573.1 exonerate:protein2genome:local splice3 639884 639885 . - . intron_id 1 ; splice_site "AG" KQ414573.1 exonerate:protein2genome:local cds 639749 639883 . - . KQ414573.1 exonerate:protein2genome:local exon 639749 639883 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local similarity 639749 640301 374 - . alignment_id 1 ; Query gi|805815197|ref|XP_012148421.1| ; Align 640302 99 129 ; Align 640055 143 90 ; Align 639884 173 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805815197|ref|XP_012148421.1| PREDICTED: uncharacterized protein LOC100884043 isoform X1 [Megachile rotundata] Target: KQ414573.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold16, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 367 Query range: 10 -> 101 Target range: 648930 -> 648657 11 : PheValThrAlaPheLeuPheGlyValIleThrProPheAlaAlaThrThrCysIleL : 30 !!.:!!||||||||||||||||||:!!||||||||||||||||||! ! !!! :!:| LeuIleThrAlaPheLeuPheGlyLeuIleThrProPheAlaAlaMetProLeuLeuL 648930 : TTGATAACAGCTTTTTTATTCGGATTAATAACACCGTTTGCGGCAATGCCATTACTGC : 648873 31 : euAsnIleAlaAspAlaValGlyPheTyrAsnLeuSerGlyGluArgProLeuThrPh : 49 ||||| !||||||.!!:!!|||||| !|||:!!|||.!!!!:|||||||||..!|| euAsnAlaAlaAspThrLeuGlyPheSerAsnValSerSerAspArgProLeuValPh 648872 : TGAATGCAGCTGACACTTTAGGATTCAGCAATGTGTCCAGCGATCGACCGTTGGTATT : 648816 50 : eArgIleGluHisPheValAspValAspLysTyrTyrTyrProLeuMetValHisSer : 68 ||||:!!||||||||||||||||||||||||||||||||| !!|||:!:||||||||| eArgValGluHisPheValAspValAspLysTyrTyrTyrThrLeuLeuValHisSer 648815 : TCGAGTTGAACATTTCGTGGATGTGGACAAATACTACTATACCCTTTTAGTGCATTCA : 648759 69 : TyrPheGlyThrValAlaPheThrAlaValValValAlaValAspSerIleIleIleI : 88 ||||||||||||:!!||||||||||||:!!||||||:!!:!!:!!||||||||| !: TyrPheGlyThrIleAlaPheThrAlaIleValValSerIleAsnSerIleIleAlaV 648758 : TACTTTGGTACTATAGCATTTACTGCGATTGTTGTCTCTATCAACTCGATAATAGCTG : 648699 89 : lePheValIleHisGluCysGlyLeuCysGluIleLeuArg : 101 !:!:!|||:!!|||||||||||||||||||||||||||||| alTyrValLeuHisGluCysGlyLeuCysGluIleLeuArg 648698 : TGTACGTCCTACACGAATGCGGACTTTGTGAAATCTTAAGG : 648658 vulgar: gi|805815197|ref|XP_012148421.1| 10 101 . KQ414573.1 648930 648657 - 367 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414573.1 exonerate:protein2genome:local gene 648658 648930 367 - . gene_id 2 ; sequence gi|805815197|ref|XP_012148421.1| ; gene_orientation . KQ414573.1 exonerate:protein2genome:local cds 648658 648930 . - . KQ414573.1 exonerate:protein2genome:local exon 648658 648930 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local similarity 648658 648930 367 - . alignment_id 2 ; Query gi|805815197|ref|XP_012148421.1| ; Align 648931 11 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805815197|ref|XP_012148421.1| PREDICTED: uncharacterized protein LOC100884043 isoform X1 [Megachile rotundata] Target: KQ414573.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold16, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 163 Query range: 212 -> 264 Target range: 629001 -> 628845 213 : ArgIlePheThrTyrAlaThrAsnAsnLysTrpTyrGlnSerSerIleLysAlaArgT : 232 :::|||::: ::: ||||||..!|||||||||:!!|||||| !!!...!|||! LysIleTyrIlePheArgThrAsnGlyLysTrpTyrGluSerSerTyrAsnCysArgL 629001 : aaaatatatattttcaggACAAATGGCAAATGGTATGAATCGTCATATAATTGCAGAA : 628944 233 : hrLeuLeuGlyIleMetLeuAlaLysSerMetLysProLeuGlnLeuThrAlaCysAr : 251 !|||||| !|||||||||:!!||||||:!:! ! !!|||:!!||||||||||||!: ysLeuLeuIleIleMetLeuSerLysSerLeuThrSerLeuLysLeuThrAlaCysLy 628943 : AACTTCTGATAATAATGTTATCAAAAAGCTTAACATCTCTTAAATTAACGGCTTGCAA : 628887 252 : gIleTyrThrLeuAsnMetGluAsnPheSerThrValArg : 264 !|||||||||||||||:::|||:::|||!:!.!!|||||| sIleTyrThrLeuAsnLeuGluSerPheAsnAlaValArg 628886 : AATCTACACattaaatttagaaagttTCAATGCGGTAaga : 628846 vulgar: gi|805815197|ref|XP_012148421.1| 212 264 . KQ414573.1 629001 628845 - 163 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414573.1 exonerate:protein2genome:local gene 628846 629001 163 - . gene_id 3 ; sequence gi|805815197|ref|XP_012148421.1| ; gene_orientation . KQ414573.1 exonerate:protein2genome:local cds 628846 629001 . - . KQ414573.1 exonerate:protein2genome:local exon 628846 629001 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local similarity 628846 629001 163 - . alignment_id 3 ; Query gi|805815197|ref|XP_012148421.1| ; Align 629002 213 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805808993|ref|XP_012146726.1| PREDICTED: uncharacterized protein LOC105663312 [Megachile rotundata] Target: KQ414601.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold45, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 876 Query range: 20 -> 333 Target range: 1071698 -> 1068204 21 : IleCysAspAlaTrpProLeuAsnAsnSerTyrLysLysPheValMetTyrMetSe : 39 |||||||||||||||||||||!..... ||| ||||||:!!:!!||| !! IleCysAspAlaTrpProLeuArgLysArgTyrValLysPheIleLeuTyrAlaIl 1071698 : ATATGCGACGCGTGGCCTTTAAGAaaacgttacgtgaaattcaTCCTGTACGCGAT : 1071644 40 : rTyrLeuSerValHisMetValIleMetTyrMetAspLeuTyrAspValMetGlyA : 58 !||||||! !:!! !!!::!!:!!|||||||||||||||!:!!!:|||:!:|||: eTyrLeuIleIleIleIleIleLeuMetTyrMetAspLeuPheGluValLeuGlyA 1071643 : CTACTTGATCATTATTATAATTCTCATGTACATGGATCTGTTCGAAGTGTTAGGAA : 1071587 59 : spLeuGluLeuMetValGluAsnIleIleAspAsnThrIleAlaThrThrThrTyr : 76 !!|||! !||||||||||||||||||||| !!||||||||| !..!||||||!:! snLeuValLeuMetValGluAsnIleIleHisAsnThrIleIleValThrThrPhe 1071586 : ATCTAGTGTTGATGGTGGAGAATATAATTCACAACACTATCATCGTTACTACTTTT : 1071533 77 : LeuMetLeuPheLeuPheArgPheSerLysLeuIleLysAsnValValAlaMetVa : 95 !!!||||||||||||.!!|||! !!:!||||||||| !:!!|||:!! !! || PheMetLeuPheLeuLeuArgCysAsnLysLeuIleAlaHisValIleIleThrVa 1071532 : TTCATGTTGTTTCTCCTTCGATGCAATAAATTGATCGCGCATGTGATCATCACCGT : 1071476 96 : lLysArgGluLeuAlaGluAsnAspPheArgAsnAsnAspGluLysGlnLeuTyrL : 114 ||||!:!|||:!!||||||! ! ! |||||||||!!.||||||! !.!.||||||| lLysGlnGluIleAlaGluIleLysPheArgAsnLysAspGluMetAspLeuTyrL 1071475 : GAAACAAGAGATAGCTGAGATCAAGTTTAGGAATAAAGACGAAATGGATTTGTATT : 1071419 115 : euSerTyrAsnIleIleSerAspAsnPheGlyLysTyrAlaValArgThrThrAla : 132 ||||||||:!!! !|||:!!|||!!.||||||!:!||||||||| !||||||||| euSerTyrHisSerIleAlaAspLysPheGlyArgTyrAlaValSerThrThrAla 1071418 : TGTCGTATCACAGTATTGCTGACAAATTCGGCAGGTACGCCGTGTCGACAACCGCG : 1071365 133 : ValIleAlaValMetTrpTyrIleThrProMetLeuGlu<->LeuLeuGlnGlySe : 150 |||:!!|||:!!:!: !|||:!:||||||||||||.!. |||:!! !|| ValValAlaIleLeuLeuTyrLeuThrProMetLeuHisMetLeuIleThrTyrSe 1071364 : GTTGTAGCGATTCTTCTGTATTTGACGCCTATGTTGCATATGTTGATAACCTATTC : 1071308 151 : r{G} >>>> Target Intron 1 >>>> {ly}AsnAspAsnSerThr<->M : 157 |{|} 280 bp {||}.!...!|||..!||| : r{G}++ ++{ly}GlnSerAsnGluThrArgV 1071307 : a{g}gt.........................ag{GG}CAGAGTAACGAAACGAGAG : 1071004 158 : etTyrArgLeuProPheArgValHisSerPheLeuAspTyrGluAspAsnLeuLys : 175 !:|||..!|||||||||! ! !:!! ! !!||| |||:!! !!:!!!!!::: alTyrGluLeuProPheProSerTyrHisValLeuProTyrLysHisAspPheArg 1071003 : TCTACGAATTGCCCTTCCCTAGTTACCATGTTCTCCCGTACAAGCATGACTTTCGC : 1070950 176 : AsnTyrMetLeuMetTyrAlaTyrGlnMetProLeuMetPheIleAlaLeuLeuHi : 194 !:!|||!!::!!|||||||||!:!||| |||||||||!!.:!:!.!||| !|| SerTyrIleIleMetTyrAlaPheGlnGlyProLeuMetLeuValGlyLeuAsnHi 1070949 : AGTTACATTATCATGTACGCGTTCCAGGGTCCGCTTATGTTGGTGGGGTTGAACCA : 1070893 195 : sIleSerSerIleSerLeuLeuLeuSerLeuValLeuHisValCysGlyLysPheS : 213 ||||!!!!!!:!!||||||:!!:!!||||||||||||||||||||||||||||||| sIleThrThrLeuSerLeuIleValSerLeuValLeuHisValCysGlyLysPheS 1070892 : CATAACCACCCTCAGTTTAATAGTTAGCCTGGTGCTGCATGTTTGCGGTAAATTCT : 1070836 214 : erIleLeuSerTyrArgIleGlnAsnIleAlaGluAspSerLysAsnSerPheGln : 231 ||||||||||||||||||||||||||||| ...||||||:!!!:!!!..!. erIleLeuSerTyrArgIleGlnAsnIleGlnIleGlnSerLysAspAsnLeuAsn 1070835 : CGATCTTGTCGTATCgtatacaaaatattcaaatccaGTCGAAAGATAATTTAAAC : 1070782 232 : ArgArgValLysGluLeuValGluArgHisValGluLeuIle{Me} >>>> Tar : 246 |||!:!:!!:!!!!:!!!||| !|||:!!:!!||||||{:!} ArgLysIleGluAspPheValThrAspHisIleLysLeuIle{Le}-+ 1070781 : AGGAAAATCGAGGATTTCGTGACCGATCACATCAAATTGATA{TT}at........ : 1070733 247 : get Intron 2 >>>> {t}ThrAlaAsnThrLeuAsnSerAlaLeuGlnTyrI : 258 1999 bp {:}! !||||||:!!:!!||||||||||||:!! !| ++{u}MetAlaAsnSerIleAsnSerAlaLeuGluValI 1070732 : .................ag{A}ATGGCGAACTCCATCAATTCAGCACTGGAAGTTA : 1068702 259 : leLeuAlaMetGluLeuIleGlnThrSerIleArgMetAlaValLeuMetTyrThr : 276 ||||| !!!:!!:|||! |||||||||||||||||||||||||||!!:|||!:! leLeuLeuIleAspLeuThrGlnThrSerIleArgMetAlaValLeuIleTyrSer 1068701 : TCCTTCTGATCGATCTGACGCAAACAAGCATAAGAATGGCTGTTCTTATATACAGT : 1068648 277 : IleLeuLeu >>>> Target Intron 3 >>>> SerLysLysValAsnAsp : 285 !|||||| 270 bp |||! !||||||!.!!!: AlaLeuLeu++ ++SerThrLysValThrGlu 1068647 : GCCCTTCTAgt.........................agtCGACGAAAGTGACCGAA : 1068351 286 : AlaTyrTyrAspAlaAsnTrpLeuLysLeuSerIleTyrAspGlnLysLeuLeuLe : 304 ||||||||||||.!!.!.|||! !:!!||||||:!! !:!!|||||||||||||| AlaTyrTyrAspThrGluTrpGlnGluLeuSerValArgAsnGlnLysLeuLeuLe 1068350 : GCGTACTATGATACCGAGTGGCAAGAATTATCGGTCCGTAATCAAAAGCTGTTGCT : 1068294 305 : uTyrCysMetCysAsnGlyArgLysThrLeuAsnLeuLysAlaGlyLysPheTyrS : 323 | !..!||| !!::!||||||!:!|||||| !!|||! !||||||||| ! |||! uLeuAlaMetArgSerGlyArgArgThrLeuTyrLeuThrAlaGlyLysValTyrA 1068293 : TCTTGCCATGCGTTCTGGACGAAGAACGTTATACCTTACAGCTGGAAAAGTGTACA : 1068237 324 : erPheSerLeuPheGlyPheIleGlnValSer : 333 :!|||||||||!:!|||||||||!!.|||||| snPheSerLeuTyrGlyPheIleHisValSer 1068236 : ATTTCTCCTTGTACGGTTTTATCCATGTAAGT : 1068205 vulgar: gi|805808993|ref|XP_012146726.1| 20 333 . KQ414601.1 1071698 1068204 - 876 M 125 375 G 0 3 M 5 15 S 0 1 5 0 2 I 0 276 3 0 2 S 1 2 M 5 15 G 0 3 M 89 267 S 0 2 5 0 2 I 0 1995 3 0 2 S 1 1 M 33 99 5 0 2 I 0 266 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414601.1 exonerate:protein2genome:local gene 1068205 1071698 876 - . gene_id 1 ; sequence gi|805808993|ref|XP_012146726.1| ; gene_orientation + KQ414601.1 exonerate:protein2genome:local cds 1071305 1071698 . - . KQ414601.1 exonerate:protein2genome:local exon 1071305 1071698 . - . insertions 3 ; deletions 0 KQ414601.1 exonerate:protein2genome:local splice5 1071303 1071304 . - . intron_id 1 ; splice_site "gt" KQ414601.1 exonerate:protein2genome:local intron 1071025 1071304 . - . intron_id 1 KQ414601.1 exonerate:protein2genome:local splice3 1071025 1071026 . - . intron_id 0 ; splice_site "AG" KQ414601.1 exonerate:protein2genome:local cds 1070736 1071024 . - . KQ414601.1 exonerate:protein2genome:local exon 1070736 1071024 . - . insertions 3 ; deletions 0 KQ414601.1 exonerate:protein2genome:local splice5 1070734 1070735 . - . intron_id 2 ; splice_site "AT" KQ414601.1 exonerate:protein2genome:local intron 1068737 1070735 . - . intron_id 2 KQ414601.1 exonerate:protein2genome:local splice3 1068737 1068738 . - . intron_id 1 ; splice_site "AG" KQ414601.1 exonerate:protein2genome:local cds 1068637 1068736 . - . KQ414601.1 exonerate:protein2genome:local exon 1068637 1068736 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local splice5 1068635 1068636 . - . intron_id 3 ; splice_site "GT" KQ414601.1 exonerate:protein2genome:local intron 1068367 1068636 . - . intron_id 3 KQ414601.1 exonerate:protein2genome:local splice3 1068367 1068368 . - . intron_id 2 ; splice_site "ag" KQ414601.1 exonerate:protein2genome:local cds 1068205 1068366 . - . KQ414601.1 exonerate:protein2genome:local exon 1068205 1068366 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local similarity 1068205 1071698 876 - . alignment_id 1 ; Query gi|805808993|ref|XP_012146726.1| ; Align 1071699 21 375 ; Align 1071321 146 15 ; Align 1071023 152 15 ; Align 1071005 157 267 ; Align 1068736 247 99 ; Align 1068367 280 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805823875|ref|XP_012151894.1| PREDICTED: uncharacterized protein LOC105663983 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 307 Query range: 86 -> 220 Target range: 1029170 -> 1028768 87 : ValLeuGluLeuThrGluAspValCysLysAsnAlaAsnAspSerAlaArgArgLe : 105 :!!:!!||| !! !:!! ! !|||:!!!..|||!!. ! !! !||| !:! LeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAspVa 1029170 : CTAATCGAAGAAATGAAGATTTGCTGTGAAACAGCGAAACCATACGAAAGAGACGT : 1029116 106 : uPheGlnArgTyrMetGluGlnPheSerThrPheTyrGlyValLeuIleIleTrpT : 124 !||||||||||||:!:!!::!!!:!||| !||||||! !..!! ! ||| lPheGlnArgTyrValAspLysTyrSerLeuPheTyrValThrCysSerSerTrpP 1029115 : CTTTCAACGATACGTCGATAAATACTCTTTATTTTACGTAACATGTTCGTCGTGGT : 1029059 125 : hrTyrAlaThrGlyMetThrPheIleLeuLysAlaLeuIleMetSerAspProTyr : 142 !||| !|||!.!:!:! !.!.:!!||| !::!! !|||!!:|||||||||!:! heTyrLeuThrAlaValIleMetValLeuGlySerArgIleIleSerAspProPhe 1029058 : TTTACTTAACAGCAGTTATTATGGTTCTGGGAAGTCGGATTATATCTGATCCTTTT : 1029005 143 : ProLeuAsnAlaIleTyrProPheArgValAspTyrGlnProLeuLysThrIleIl : 161 ||| !||||||:!!|||||||||! !|||:!!!:!:!!||||||!:!!:!||||| ProThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIl 1029004 : CCAACCAACGCCGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGTATCAT : 1028948 162 : ePheLeuHisGlnSerLeuTyrIleCysAsnValSerGlyAsnSerSerValAsnV : 180 ||||:!!|||||||||!!! ! ! .!. !:!!!.!:!!!!!|||:!!|||| ePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisThrSerMetAsnV 1028947 : TTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACACTAGTATGAATG : 1028891 181 : alPheCysGlyPheLeuLeuPhePheAlaAlaAlaArgPheGluIleLeuLysMet : 198 ||.!. !!.!!!.||||||.!.|||||||||||||||||||||||||||! !||| alLeuThrAlaLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuMetMet 1028890 : TGCTAACTGCATTGTTATTACTATTTGCTGCAGCTCGTTTCGAGATACTGATGATG : 1028837 199 : LysLeuArgAsnValLysAsnThrGluAspLeuIleIleArgMetGluGluTyrTy : 217 :!!||||||||||||!..:!!! !||| ||||||! ! !!|||:!!:!!|||! GluLeuArgAsnValSerAspIleGluThrLeuIleLysCysMetLysLysTyrSe 1028836 : GAGCTGAGGAATGTCAGTGACATTGAAACACTGATTAAATGTATGAAAAAGTATTC : 1028780 218 : rValValLys : 220 :!!|||::! rIleValArg 1028779 : GATCGTACGG : 1028769 vulgar: gi|805823875|ref|XP_012151894.1| 86 220 . KQ414618.1 1029170 1028768 - 307 M 134 402 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028769 1029170 307 - . gene_id 1 ; sequence gi|805823875|ref|XP_012151894.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028769 1029170 . - . KQ414618.1 exonerate:protein2genome:local exon 1028769 1029170 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028769 1029170 307 - . alignment_id 1 ; Query gi|805823875|ref|XP_012151894.1| ; Align 1029171 87 402 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805823875|ref|XP_012151894.1| PREDICTED: uncharacterized protein LOC105663983 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 289 Query range: 86 -> 220 Target range: 1038337 -> 1037935 87 : ValLeuGluLeuThrGluAspValCysLysAsnAlaAsnAspSerAlaArgArgLe : 105 :!!:!!||| !! !:!! ! !|||:!!!..|||!!. ! !! !||| !:! LeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAspVa 1038337 : CTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGACGT : 1038283 106 : uPheGlnArgTyrMetGluGlnPheSerThrPheTyrGlyValLeuIleIleTrpT : 124 !||||||||||||:!:.!.:!! ||| |||||| ... ! !||| lPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpP 1038282 : CTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGT : 1038226 125 : hrTyrAlaThrGlyMetThrPheIleLeuLysAlaLeuIleMetSerAspProTyr : 142 !||| !|||!.!!!:! !.!.:!!||| !::!|||:!!!!:|||||||||!:! heTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPhe 1038225 : TTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTT : 1038172 143 : ProLeuAsnAlaIleTyrProPheArgValAspTyrGlnProLeuLysThrIleIl : 161 ||| !||||||:!!|||||||||! !|||:!!!:!:!!||||||!:!!:!||||| ProThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIl 1038171 : CCAACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCAT : 1038115 162 : ePheLeuHisGlnSerLeuTyrIleCysAsnValSerGlyAsnSerSerValAsnV : 180 ||||:!!|||||||||!!! ! ! .!. !:!!!.!:!!:!!|||:!!|||| ePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnV 1038114 : TTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATG : 1038058 181 : alPheCysGlyPheLeuLeuPhePheAlaAlaAlaArgPheGluIleLeuLysMet : 198 ||.!!! !!.!.!.||||||.!.|||.!!.!!|||||||||||||||||| !! ! alLeuSerAlaLeuLeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThr 1038057 : TGCTTTCTGCACTGTTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACG : 1038004 199 : LysLeuArgAsnValLysAsnThrGluAspLeuIleIleArgMetGluGluTyrTy : 217 :!!||||||||||||!!.:!!! !||| ||||||! !!!|||:!!:!!|||! GluLeuArgAsnValAsnAspIleGluThrLeuIleLysSerMetLysLysTyrSe 1038003 : GAGTTGAGGAATGTCAATGATATCGAAACACTGATTAAGAGTATGAAAAAGTATTC : 1037947 218 : rValValLys : 220 ..!|||::! rThrValArg 1037946 : GACTGTGCGG : 1037936 vulgar: gi|805823875|ref|XP_012151894.1| 86 220 . KQ414618.1 1038337 1037935 - 289 M 134 402 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037936 1038337 289 - . gene_id 2 ; sequence gi|805823875|ref|XP_012151894.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1037936 1038337 . - . KQ414618.1 exonerate:protein2genome:local exon 1037936 1038337 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037936 1038337 289 - . alignment_id 2 ; Query gi|805823875|ref|XP_012151894.1| ; Align 1038338 87 402 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805823875|ref|XP_012151894.1| PREDICTED: uncharacterized protein LOC105663983 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 211 Query range: 95 -> 220 Target range: 1052920 -> 1052545 96 : LysAsnAlaAsnAspSerAlaArgArgLeuPheGlnArgTyrMetGluGlnPheSe : 114 |||.!.|||.!..!.! !! !|||..!:!!.!!!!.!.!|||!!::!!:!!! !!. LysGluAlaGlnGlnPheGluArgGluIleLeuHisAsnTyrIleGlnLysCysLy 1052920 : AAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCACAACTATATCCAAAAATGCAA : 1052866 115 : rThrPheTyrGlyValLeuIleIleTrpThrTyrAlaThrGlyMetThrPheIleL : 133 ! !|||||||||! !! !:!!|||||||||||| ! !!.!! !|||:!!| sLeuPheTyrGlyGlySerLeuIleTrpThrTyrLeuCysAlaThrCysPheValL 1052865 : ACTTTTTTACGGTGGTTCGTTAATTTGGACATACCTCTGTGCAACTTGTTTCGTAT : 1052809 134 : euLysAlaLeuIleMetSerAspProTyrProLeuAsnAlaIleTyrProPheArg : 151 || ! !!:!!:!!:!: !!:!!|||!:!||| !!:!||| |||||||||||| euGlyProValValLeuProAsnProPheProSerSerAlaGluTyrProPheArg 1052808 : TAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGCAGTGCAGAGTATCCGTTTCGC : 1052755 152 : ValAspTyrGlnProLeuLysThrIleIlePheLeuHisGlnSerLeuTyrIleCy : 170 |||:!! ! !|||:!!!!..!!|||:!!!:!||||||||||||!!! ! !! ValAsnArgThrProMetAsnAlaIleValTyrLeuHisGlnSerPheIleSerPh 1052754 : GTTAATCGTACACCCATGAATGCTATTGTCTACCTGCACCAATCTTTCATAAGCTT : 1052698 171 : sAsnValSerGlyAsnSerSerValAsnValPheCysGlyPheLeuLeuPhePheA : 189 !.!. !|||!.!:!!! !!!!|||!:!:!!||| ! !.!.!!||||||!::.!!. eGlnTyrSerAlaHisIleCysValSerIlePheGlyAlaLeuLeuLeuTrpIleT 1052697 : TCAGTACAGTGCACACATATGTGTAAGCATTTTCGGAGCTCTTTTACTCTGGATTA : 1052641 190 : laAlaAlaArgPheGluIleLeuLysMetLysLeuArgAsnValLysAsnThrGlu : 207 !!||||||||||||.!. !|||! :!!:!!:!!!:!.!. !..!!:!! !.!. hrAlaAlaArgPheHisCysLeuThrLeuGluValGlnGlnSerSerSerIleHis 1052640 : CGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTTCAACAAAGTTCAAGTATTCAT : 1052587 208 : AspLeuIleIleArgMetGluGluTyrTyrValValLys : 220 ||||||||| !!:!::!!:!! ! :!!:!!!:! MetLeuIleIleCysValLysLysGlnLeuLeuLeuArg 1052586 : ATGTTAATCATCTGTGTTAAGAAACAGCTACTACTGAGG : 1052546 vulgar: gi|805823875|ref|XP_012151894.1| 95 220 . KQ414618.1 1052920 1052545 - 211 M 125 375 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1052546 1052920 211 - . gene_id 3 ; sequence gi|805823875|ref|XP_012151894.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1052546 1052920 . - . KQ414618.1 exonerate:protein2genome:local exon 1052546 1052920 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1052546 1052920 211 - . alignment_id 3 ; Query gi|805823875|ref|XP_012151894.1| ; Align 1052921 96 375 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805823875|ref|XP_012151894.1| PREDICTED: uncharacterized protein LOC105663983 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 200 Query range: 91 -> 202 Target range: 1058122 -> 1057789 92 : GluAspValCysLysAsnAlaAsnAspSerAlaArgArgLeuPheGlnArgTyrMe : 110 |||:!! !!|||!:! !!|||!.!...... ::: :::.!.|||||||||:! GluAsnPheCysArgTyrAlaThrSerLysGluLysValValLeuGlnArgTyrVa 1058122 : GAGAATTTCTGCAGATACGCCACCtcgaaggaaaaagttgtcCTGCAACGATACGT : 1058068 111 : tGluGlnPheSerThrPheTyrGlyValLeuIleIleTrpThrTyrAlaThrGlyM : 129 !!!:::!!:!!.! !|||:!!|||:!!! !|||:!!||| !!:! !||| !! lAspArgTyrLysTyrPheHisGlyIleTyrIleLeuTrpCysPheLeuThrThrI 1058067 : GGACAGATACAAATACTTTCATGGGATTTATATATTATGGTGCTTCCTCACGACCA : 1058011 130 : etThrPheIleLeuLysAlaLeuIleMetSerAspProTyrProLeuAsnAlaIle : 147 !: ! !!||| ! !!||| ! !!.!. !!!:!||| !:!!|||||| lePheValIleSerGlyProLeuTyrSerProGlnThrPheProThrHisAlaIle 1058010 : TCTTCGTCATAAGTGGTCCATTGTACTCACCACAGACGTTCCCCACTCATGCGATA : 1057957 148 : TyrProPheArgValAspTyrGlnProLeuLysThrIleIlePheLeuHisGlnSe : 166 |||||||||!:!|||!!::!! !! !!!!||| :::|||:::...|||||||| TyrProPheGlnValGluHisThrLeuPheLysIleValIleTyrPheHisGlnSe 1057956 : TATCCTTTCCAAGTGGAACATACACTGTTCAagattgttatttatttccatCAGTC : 1057900 167 : rLeuTyrIleCysAsnValSerGlyAsnSerSerValAsnValPheCysGlyPheL : 185 |||| ! !! !.!.!.!|||!.!..!! !:!!:!!:!!..! !!.!.!!| rLeuValGlyPheGlnAlaSerAlaGlyMetAlaIleAspThrGlnIleAlaLeuL 1057899 : GTTAGTTGGTTTTCAGGCGTCCGCTGGTATGGCCATCGACACTCAAATTGCTCTTC : 1057843 186 : euLeuPhePheAlaAlaAlaArgPheGluIleLeuLysMetLysLeuArgAsn : 202 ||||| !:!||||||||||||||||||:!!||| !! :!!:!!|||||| euLeuArgTyrAlaAlaAlaArgPheGluLeuLeuGlyAsnGluMetArgAsn 1057842 : TTCTGCGATACGCGGCTGCCAGGTTCGAGCTATTGGGAAACGAGATGCGAAAT : 1057790 vulgar: gi|805823875|ref|XP_012151894.1| 91 202 . KQ414618.1 1058122 1057789 - 200 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057790 1058122 200 - . gene_id 4 ; sequence gi|805823875|ref|XP_012151894.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1057790 1058122 . - . KQ414618.1 exonerate:protein2genome:local exon 1057790 1058122 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057790 1058122 200 - . alignment_id 4 ; Query gi|805823875|ref|XP_012151894.1| ; Align 1058123 92 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805814959|ref|XP_012148352.1| PREDICTED: uncharacterized protein LOC105663513 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 2 -> 45 Target range: 1028897 -> 1028768 3 : IleAsnMetPheCysAlaPheLeuLeuPhePheAlaAlaAlaArgPheGluIleLe : 21 !!:|||:!!.!. !|||!!.||||||.!.|||||||||||||||||||||||||| MetAsnValLeuThrAlaLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIleLe 1028897 : ATGAATGTGCTAACTGCATTGTTATTACTATTTGCTGCAGCTCGTTTCGAGATACT : 1028843 22 : uLysGlnArgLeuArgAspValLysSerThrAspGluMetIleIleHisMetLysG : 40 |! !..!..!||||||:!!|||!....!! !!!: !:!!|||! ! !||||||: uMetMetGluLeuArgAsnValSerAspIleGluThrLeuIleLysCysMetLysL 1028842 : GATGATGGAGCTGAGGAATGTCAGTGACATTGAAACACTGATTAAATGTATGAAAA : 1028786 41 : luTyrCysValValLys : 45 !!|||! :!!|||::! ysTyrSerIleValArg 1028785 : AGTATTCGATCGTACGG : 1028769 vulgar: gi|805814959|ref|XP_012148352.1| 2 45 . KQ414618.1 1028897 1028768 - 100 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028769 1028897 100 - . gene_id 1 ; sequence gi|805814959|ref|XP_012148352.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028769 1028897 . - . KQ414618.1 exonerate:protein2genome:local exon 1028769 1028897 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028769 1028897 100 - . alignment_id 1 ; Query gi|805814959|ref|XP_012148352.1| ; Align 1028898 3 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825633|ref|XP_012152700.1| PREDICTED: uncharacterized protein LOC100879986 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 124 -> 211 Target range: 14139 -> 13881 125 : LeuValAlaPheAsnTyrIleProLeuIleProProThrLeuAspIleIleLeuProLeu : 144 :!!:!! !||| !! |||:!!! !|||! !! !|||||||||:!!|||||| ! ValIleLeuPheValThrThrProValThrProHisIleLeuAspIleLeuLeuProLys 14139 : GTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAG : 14082 145 : AsnGluThrArgProArgGlnGlnLeuPheGlnValAsnTyrIlePhePheAspValAsp : 164 ||||||:!!||| ! ! ! ! :!!!:!! !!.! ||| !||| !|||! ! !! AsnGluSerArgAspValAlaTyrIleTyrProAla---TyrTyrPheThrAspGluHis 14081 : AACGAGTCACGAGACGTAGCGTACATTTACCCGGCC---TATTATTTCACCGACGAGCAT : 14025 165 : AspHisPhePheAlaIleTyrLeuHisMetSerTrpAlaGlySerLeuThrValPheVal : 184 ! :!! ! ! !||| ! !||||||:!!! !.! ! !:!!..! !!!:!||| LysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrVal 14024 : AAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTG : 13965 185 : IleValThrIleAspSerLeuTyrMetLeuIleIleHisHisAlaSerGlyLeuPheAsp : 204 !|||.!! !|||!!! !|||!!:! !:!!:!:!!.|||!.!!!!||||||!!.! ! TyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAla 13964 : TACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCC : 13905 205 : ValCysGlyTyrGlnValGln : 211 |||! !||| ::::::::: ValSerGly***LysIleArg 13904 : GTGTCCGGgtaaaaaattcga : 13882 vulgar: gi|805825633|ref|XP_012152700.1| 124 211 . KQ414772.1 14139 13881 - 103 M 32 96 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13882 14139 103 - . gene_id 1 ; sequence gi|805825633|ref|XP_012152700.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13882 14139 . - . KQ414772.1 exonerate:protein2genome:local exon 13882 14139 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 13882 14139 103 - . alignment_id 1 ; Query gi|805825633|ref|XP_012152700.1| ; Align 14140 125 96 ; Align 14044 158 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825633|ref|XP_012152700.1| PREDICTED: uncharacterized protein LOC100879986 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 118 -> 196 Target range: 45967 -> 45736 119 : MetThrLeuLeuSerPheLeuValAlaPheAsnTyrIleProLeuIleProProThrLeu : 138 :!:|||:!!! !! ! :!! !!.!|||::! ! |||||||||||| !! !||| ValThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeu 45967 : GTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTG : 45910 139 : AspIleIleLeuProLeuAsnGluThrArgProArgGlnGlnLeuPheGlnValAsnTyr : 158 |||:!!|||! !||||||||||||:!!||||||||| ! ! !!:!:!!!.! ||| AspLeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAla---Tyr 45909 : GACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCC---TAC : 45853 159 : IlePhePheAspValAspAspHisPhePheAlaIleTyrLeuHisMetSerTrpAlaGly : 178 !!:!|||:!! !||||||:!!!:!!:! !:!! !:!!! ||| !..! ! CysTyrPheAsnProAspAspTyrTyrTyrTyrValValGlyTyrThrSerAlaCysIle 45852 : TGTTACTTCAATCCGGACGACTACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATA : 45793 179 : SerLeuThrValPheValIleValThrIleAspSerLeuTyrMetLeuIleIle : 196 .!!:!!.!!! !.!!|||:!!||| ! !|||! !:!! !!:! !:!!:!! GlyMetAlaGlyLeuValLeuValGlyAlaAspIleIleMetIleHisLeuVal 45792 : GGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATTATGATACATCTTGTA : 45737 vulgar: gi|805825633|ref|XP_012152700.1| 118 196 . KQ414772.1 45967 45736 - 100 M 38 114 G 1 0 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45737 45967 100 - . gene_id 2 ; sequence gi|805825633|ref|XP_012152700.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45737 45967 . - . KQ414772.1 exonerate:protein2genome:local exon 45737 45967 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 45737 45967 100 - . alignment_id 2 ; Query gi|805825633|ref|XP_012152700.1| ; Align 45968 119 114 ; Align 45854 158 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805803754|ref|XP_003705289.2| PREDICTED: uncharacterized protein LOC100883629 [Megachile rotundata] Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 543 Query range: 0 -> 222 Target range: 57441 -> 58107 1 : MetAspPheLeuAsnLeuAsnArgLeuAsnAlaPheMetAsnValMetSerGlyAsnMet : 20 |||||||||! !!:!|||!:!!:!|||||| !.!!!!:||| ! |||||||||... MetAspPheGlnSerLeuSerGlnLeuAsnMetLeuIleAsnLysTyrSerGlyAsnGln 57442 : ATGGATTTTCAAAGCTTGAGTCAGCTAAATATGCTTATAAACAAGTATTCGGGGAATCAA : 57499 21 : LeuProValThrAspLysArgMetLysLeuSerValSerThrArgIleTyrTrpLeuIle : 40 ||||||:!!|||||||||!:!! !|||||| !! !! ! !!:!! !|||! !:!!!!: LeuProMetThrAspLysLysThrLysLeuProTyrIleLeuLysSerTyrSerIleMet 57500 : CTACCGATGACGGATAAGAAAACGAAATTACCGTATATTTTAAAGAGCTATTCGATTATG : 57559 41 : ValTrpLeuValGlnLeuSerTyrLeuAlaValCysValLeuGlyAlaArgTyrValPro : 60 !||||||:!!||||||!!!||||||.!!|||||||||!!!||| ! ! !!|||||| SerTrpLeuIleGlnLeuThrTyrLeuThrValCysValPheGlyLeuPheAsnValPro 57560 : TCTTGGCTGATACAGCTAACATACCTGACTGTCTGCGTTTTTGGTCTTTTCAACGTACCC : 57619 61 : ThrGluIleSerLeuLysAspSerThrValAlaMetAlaValSerLeuGluGlyIleIle : 80 ! !!!:! !:!!|||||||||.!!|||||| !!!:!.!|||:!!||||||! !|||:!: ArgAspLysAlaLeuLysAspGlyThrValAsnIleValValAlaLeuGluGluIleVal 57620 : AGAGATAAAGCATTGAAGGACGGCACGGTAAATATAGTGGTTGCTTTAGAAGAAATTGTG : 57679 81 : LeuSerLeuTyrMetAsnSerArgGlnAsnLeuLeuArgArgLeuIleGluGlnLeuAsn : 100 ||| !:!!|||:!!:!!!:!|||:!!!.!|||:!!||||||||||||! !:!!|||||| LeuValIleTyrLeuHisAsnArgLysThrLeuValArgArgLeuIleGlyGluLeuAsn 57680 : CTGGTTATTTATTTGCACAACCGTAAAACTTTGGTACGAAGGTTAATTGGAGAACTGAAT : 57739 101 : AspThrLeuAsnAsnGlyAspLysLeuLeuArgSerValThrThrGlnThrValGlnPro : 120 !..!||| ! !:!!:!!:!!||||||!:!||||||! !.!.||||||:!! !! ArgValLeuAlaValAspAsnGluMetLeuArgAsnValThrIleAsnThrValLysSer 57740 : CGTGTTCTCGCGGTAGATAACGAGATGCTACGAAATGTCACGATTAATACCGTGAAATCC : 57799 121 : LeuGluLysValLeuLysLeuTyrThrIleGlySerIleGlyProValThrValTrpThr : 140 ||||||||| ||||||:::|||||||||!.!|||:!!..! !!|||! !:!!|||||| LeuGluLysProLeuLysIleTyrThrIleAlaSerValAsnAlaValMetLeuTrpThr 57800 : TTAGAGAAAcccttgaaaatttatacgatTGCCAGTGTTAATGCAGTTATGCTTTGGACA : 57859 141 : LeuLeuGlnPheIleArgValThrGlnThrAspGluPheTyrTyrValAspTyrArgVal : 160 !|||! !.!!:!!!:!||| !!:!! !..!||||||||||||..!||||||!!!||| AlaLeuProLeuValGlnValPheArgArgSerGluPheTyrTyrThrAspTyrSerVal 57860 : GCTTTGCCACTCGTCCAAGTATTTCGGAGATCTGAGTTCTATTATACGGATTATAGTGTG : 57919 161 : ProAlaValPheSerAlaGluProPheSerLeuLysValPheValAlaGlyGlyPhePhe : 180 ||||||!.!.!.||| !:!!|||||||||! ! ! |||||||||!.!|||! ! !!.!! ProAlaAlaLeuSerLysGlnProPheSerTyrAspValPheValGlyGlyValValLeu 57920 : CCAGCTGCTCTATCTAAGCAACCGTTTTCATACGACGTTTTCGTCGGCGGCGTTGTTCTT : 57979 181 : ValCysLeuGlySerThrTyrAlaIleAlaArgLysValSerLeuAspLeuTyrMetIle : 200 ! !:!!|||.!!..!|||...::: :::|||:::...:!!|||:!!|||! !!!: GlnIleIleGlyGlyValTyrThrValMetLysLysIleGlyValAspIleTyrThrMet 57980 : CAGATTATTGGTGGTGTATACAccgtaatgaaaaaaattggcgTGGATATTTATACGATG : 58039 201 : HisMetIleArgLeuMetThrAlaGlnTyrArgTyrLeuArgIleLysPheAlaGluIle : 220 |||:!!|||! !||||||||||||||||||!:!|||:!!||| !||| !!||| !! ! HisLeuIleLeuLeuMetThrAlaGlnTyrLysTyrIleArgGlyLysValAlaMetThr 58040 : CATTTGATTCTTTTAATGACGGCGCAGTACAAATATATTAGGGGCAAAGTTGCGATGACA : 58099 221 : LeuArg : 222 !!!||| PheArg 58100 : TTTCGA : 58107 vulgar: gi|805803754|ref|XP_003705289.2| 0 222 . KQ414777.1 57441 58107 + 543 M 222 666 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 57442 58107 543 + . gene_id 1 ; sequence gi|805803754|ref|XP_003705289.2| ; gene_orientation . KQ414777.1 exonerate:protein2genome:local cds 57442 58107 . + . KQ414777.1 exonerate:protein2genome:local exon 57442 58107 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 57442 58107 543 + . alignment_id 1 ; Query gi|805803754|ref|XP_003705289.2| ; Align 57442 1 666 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805803754|ref|XP_003705289.2| PREDICTED: uncharacterized protein LOC100883629 [Megachile rotundata] Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 396 Query range: 254 -> 391 Target range: 61693 -> 63128 255 : LysMetThrSerThrLeuLysLysValLeuAlaProAsnIleGlyValLeuTyrIleAsn : 274 :::||||||! !! !|||||||||:!!|||:!!||||||||||||:!!||||||:!!||| ArgMetThrIleMetLeuLysLysLeuLeuSerProAsnIleGlyIleLeuTyrValAsn 61694 : aggaTGACTATTATGTTGAAGAAATTACTATCTCCAAACATTGGAATACTTTACGTAAAC : 61751 275 : AsnValPheArgPheCysPheLeuSerIleMetLeuValMet >>>> Target Intr : 289 |||||||||||||||||||||||||||:!!|||:!!:!!! ! 80 bp AsnValPheArgPheCysPheLeuSerLeuMetIleIleThr++ 61752 : AACGTTTTCCGGTTCTGCTTTCTAAGTTTAATGATTATAACGgt................ : 61798 290 : on 1 >>>> ThrSerThrGluAspMetGluLysTyrLeuIleThrLeuTyrSerIleG : 305 ...||| ::::::...|||||| :::|||...:!!|||!!!|||| ++AsnSerGlyAspAsnPheGluLysLeuIleIleValMetTyrThrIleG 61799 : .........agaattccggagataattttgaaaaattgataattgtaATGTATACAATTG : 61924 306 : lyAlaLeuIleGlnLeuTyrMetLeuCysPheSerIleGlnGluLeuLeuGluAla >> : 324 ||||||||! |||!!!|||:!:|||||||||!!!||||||||||||:!!|||||| lyAlaLeuThrGlnPheTyrValLeuCysPheCysIleGlnGluLeuValGluAla++ 61925 : GTGCTCTAACGCAATTTTATGTATTGTGCTTCTGTATTCAAGAGTTAGTCGAAGCGgt.. : 61983 325 : >> Target Intron 2 >>>> SerIleAlaValAlaAspAspAlaPheTyrGluLy : 335 120 bp |||! !:!!||||||||||||!.! ! :!!|||:: ++SerThrSerValAlaAspAspValValHisGluAr 61984 : .......................agAGCACATCTGTAGCGGACGATGTAGTACATGAACG : 62134 336 : sTrpCysValTyrAspThrSerLeuLeuArgAlaThrAlaIleMetSerPheGlySerLy : 355 !|||! ! !!! !|||..! !:!!! !|||!.!! !|||!!:!!:! !!!.!.!..!|| gTrpTyrPheCysAspValLeuValGlnArgValIleAlaMetIleIleLeuAlaAspLy 62135 : ATGGTATTTCTGTGATGTACTAGTACAACGAGTAATTGCTATGATTATTTTAGCTGATAA : 62194 356 : sLeuGluCysLysLeuThrSerValArgSerValAspLeuThrLeuSerSerPheMetSe : 375 |:!!||||||!:!|||:!!||| !!|||!:!:!!|||||||||||| !!||||||||||| sMetGluCysArgLeuSerSerPheArgAsnIleAspLeuThrLeuProSerPheMetSe 62195 : AATGGAATGTAGACTGTCCAGTTTTCGGAACATAGATTTAACTTTACCATCTTTTATGTC : 62254 376 : r >>>> Target Intron 3 >>>> IleLeuAsnGlnAlaTyrSerValCysLeu : 385 | 824 bp |||||||||||||||||||||..! !!||| r++ ++IleLeuAsnGlnAlaTyrSerThrSerLeu 62255 : Ggt.........................agATTCTAAACCAAGCATACTCGACTAGTTTG : 63108 386 : LeuPheLeuLysAlaArg : 391 |||||||||||||||!:! LeuPheLeuLysAlaLys 63109 : CTGTTTTTGAAAGCAAAA : 63128 vulgar: gi|805803754|ref|XP_003705289.2| 254 391 . KQ414777.1 61693 63128 + 396 M 34 102 5 0 2 I 0 76 3 0 2 M 35 105 5 0 2 I 0 116 3 0 2 M 52 156 5 0 2 I 0 820 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 61694 63128 396 + . gene_id 2 ; sequence gi|805803754|ref|XP_003705289.2| ; gene_orientation + KQ414777.1 exonerate:protein2genome:local cds 61694 61795 . + . KQ414777.1 exonerate:protein2genome:local exon 61694 61795 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local splice5 61796 61797 . + . intron_id 1 ; splice_site "GT" KQ414777.1 exonerate:protein2genome:local intron 61796 61875 . + . intron_id 1 KQ414777.1 exonerate:protein2genome:local splice3 61874 61875 . + . intron_id 0 ; splice_site "ag" KQ414777.1 exonerate:protein2genome:local cds 61876 61980 . + . KQ414777.1 exonerate:protein2genome:local exon 61876 61980 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local splice5 61981 61982 . + . intron_id 2 ; splice_site "GT" KQ414777.1 exonerate:protein2genome:local intron 61981 62100 . + . intron_id 2 KQ414777.1 exonerate:protein2genome:local splice3 62099 62100 . + . intron_id 1 ; splice_site "AG" KQ414777.1 exonerate:protein2genome:local cds 62101 62256 . + . KQ414777.1 exonerate:protein2genome:local exon 62101 62256 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local splice5 62257 62258 . + . intron_id 3 ; splice_site "GT" KQ414777.1 exonerate:protein2genome:local intron 62257 63080 . + . intron_id 3 KQ414777.1 exonerate:protein2genome:local splice3 63079 63080 . + . intron_id 2 ; splice_site "AG" KQ414777.1 exonerate:protein2genome:local cds 63081 63128 . + . KQ414777.1 exonerate:protein2genome:local exon 63081 63128 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 61694 63128 396 + . alignment_id 2 ; Query gi|805803754|ref|XP_003705289.2| ; Align 61694 255 102 ; Align 61876 289 105 ; Align 62101 324 156 ; Align 63081 376 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805803739|ref|XP_012145291.1| PREDICTED: uncharacterized protein LOC105663048 [Megachile rotundata] Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 498 Query range: 0 -> 226 Target range: 57441 -> 58119 1 : MetAspPheLeuAsnLeuAsnProLeuAsnAlaPheMetAsnIleMetSerGlyAsnMet : 20 |||||||||! !!:!|||!:!! !|||||| !.!!!!:|||! |||||||||... MetAspPheGlnSerLeuSerGlnLeuAsnMetLeuIleAsnLysTyrSerGlyAsnGln 57442 : ATGGATTTTCAAAGCTTGAGTCAGCTAAATATGCTTATAAACAAGTATTCGGGGAATCAA : 57499 21 : LeuProValSerAsnLysAsnMetLysLeuSerValIleThrArgIleTyrTrpProLeu : 40 ||||||:!!!!!:!!|||!!.! !|||||| !! !||| !!:!! !|||! ! !:!! LeuProMetThrAspLysLysThrLysLeuProTyrIleLeuLysSerTyrSerIleMet 57500 : CTACCGATGACGGATAAGAAAACGAAATTACCGTATATTTTAAAGAGCTATTCGATTATG : 57559 41 : ValTrpValLeuGlnValPheTyrLeuSerValCysPheLeuGlyIleArgTyrAlaPro : 60 !|||:!!:!!|||:!! ||||||!!!|||||| !!!!!|||:!! ! !!!.!||| SerTrpLeuIleGlnLeuThrTyrLeuThrValCysValPheGlyLeuPheAsnValPro 57560 : TCTTGGCTGATACAGCTAACATACCTGACTGTCTGCGTTTTTGGTCTTTTCAACGTACCC : 57619 61 : ValGluLysSerLeuArgAspSerThrValSerThrAlaValThrLeuGluGlyIleIle : 80 !!!:|||:!!|||!:!|||.!!||||||!:!! !!.!|||.!!||||||! !|||:!: ArgAspLysAlaLeuLysAspGlyThrValAsnIleValValAlaLeuGluGluIleVal 57620 : AGAGATAAAGCATTGAAGGACGGCACGGTAAATATAGTGGTTGCTTTAGAAGAAATTGTG : 57679 81 : LeuSerLeuTyrMetAsnSerArgArgAsnLeuLeuArgArgPheIleGluGlnLeuAsn : 100 ||| !:!!|||:!!:!!!:!|||!:!!.!|||:!!||||||!!.|||! !:!!|||||| LeuValIleTyrLeuHisAsnArgLysThrLeuValArgArgLeuIleGlyGluLeuAsn 57680 : CTGGTTATTTATTTGCACAACCGTAAAACTTTGGTACGAAGGTTAATTGGAGAACTGAAT : 57739 101 : AspThrLeuAspLysGlyAsnLysMetLeuGluThrIleThrIleGluSerValLysPro : 120 !..!|||! !! !|||:!!||||||..!!.!:!!||||||.!.!!!|||||| !! ArgValLeuAlaValAspAsnGluMetLeuArgAsnValThrIleAsnThrValLysSer 57740 : CGTGTTCTCGCGGTAGATAACGAGATGCTACGAAATGTCACGATTAATACCGTGAAATCC : 57799 121 : LeuGluLeuValLeuArgLeuTyrThrTyrGlySerIleAlaSerValAlaValTrpAla : 140 |||||| ! |||::::::|||||| !!.!|||:!! !:!!||| !:!!|||.!! LeuGluLysProLeuLysIleTyrThrIleAlaSerValAsnAlaValMetLeuTrpThr 57800 : TTAGAGAAAcccttgaaaatttatacgatTGCCAGTGTTAATGCAGTTATGCTTTGGACA : 57859 141 : LeuLeuGlnPheThrIleValThrGlnThrAspGluPheTyrTyrValAspTyrArgVal : 160 !|||! !.!!..! !||| !!:!! !..!||||||||||||..!||||||!!!||| AlaLeuProLeuValGlnValPheArgArgSerGluPheTyrTyrThrAspTyrSerVal 57860 : GCTTTGCCACTCGTCCAAGTATTTCGGAGATCTGAGTTCTATTATACGGATTATAGTGTG : 57919 161 : ProAlaValPheSerProGluProPheSerLeuLysValPheValProSerGlyLeuVal : 180 ||||||!.!.!.||| !:!!|||||||||! ! ! ||||||||| !.!!! !:!!:!! ProAlaAlaLeuSerLysGlnProPheSerTyrAspValPheValGlyGlyValValLeu 57920 : CCAGCTGCTCTATCTAAGCAACCGTTTTCATACGACGTTTTCGTCGGCGGCGTTGTTCTT : 57979 181 : ValCysLeuGlyAsnMetTyrAlaIleIleArgLysAlaSerLeuAspIleTyrValIle : 200 ! !:!!|||..!:!:|||...:::::::::||| ...:!!|||||||||..!!!: GlnIleIleGlyGlyValTyrThrValMetLysLysIleGlyValAspIleTyrThrMet 57980 : CAGATTATTGGTGGTGTATACAccgtaatgaaaaaaattggcgTGGATATTTATACGATG : 58039 201 : HisMetIleArgLeuValThrAlaGlnTyrLysTyrLeuArgArgLysLeuAlaGluIle : 220 |||:!!|||! !|||:!!||||||||||||||||||:!!||| !!|||:!!||| !! ! HisLeuIleLeuLeuMetThrAlaGlnTyrLysTyrIleArgGlyLysValAlaMetThr 58040 : CATTTGATTCTTTTAATGACGGCGCAGTACAAATATATTAGGGGCAAAGTTGCGATGACA : 58099 221 : LeuArgGlyThrSerGlu : 226 !!!||| ! !!:!||| PheArgGlnTyrAsnGlu 58100 : TTTCGACAGTATAACGAA : 58119 vulgar: gi|805803739|ref|XP_012145291.1| 0 226 . KQ414777.1 57441 58119 + 498 M 226 678 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 57442 58119 498 + . gene_id 1 ; sequence gi|805803739|ref|XP_012145291.1| ; gene_orientation . KQ414777.1 exonerate:protein2genome:local cds 57442 58119 . + . KQ414777.1 exonerate:protein2genome:local exon 57442 58119 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 57442 58119 498 + . alignment_id 1 ; Query gi|805803739|ref|XP_012145291.1| ; Align 57442 1 678 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805803739|ref|XP_012145291.1| PREDICTED: uncharacterized protein LOC105663048 [Megachile rotundata] Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 203 Query range: 319 -> 387 Target range: 62100 -> 63128 320 : SerLysAlaIleAlaAspAspAlaPheTyrGluLysTrpTyrValTyrAspSerSerLeu : 339 |||! !:!!:!!|||||||||!.! ! :!!|||::!|||||| !!! !||| ! !:!! SerThrSerValAlaAspAspValValHisGluArgTrpTyrPheCysAspValLeuVal 62101 : AGCACATCTGTAGCGGACGATGTAGTACATGAACGATGGTATTTCTGTGATGTACTAGTA : 62158 340 : GlnArgAlaMetValIleMetThrPheGlySerLysLeuGluCysLysValSerSerIle : 359 ||||||!.!!!:!.!!!:!!:! !!!.!.!..!|||:!!||||||!:!:!!||||||.!! GlnArgValIleAlaMetIleIleLeuAlaAspLysMetGluCysArgLeuSerSerPhe 62159 : CAACGAGTAATTGCTATGATTATTTTAGCTGATAAAATGGAATGTAGACTGTCCAGTTTT : 62218 360 : ArgSerIleAspLeuThrLeuProSerPheMetSer >>>> Target Intron 1 > : 372 |||!:!|||||||||||||||||||||||||||||| 824 bp ArgAsnIleAspLeuThrLeuProSerPheMetSer++ 62219 : CGGAACATAGATTTAACTTTACCATCTTTTATGTCGgt...................... : 62259 373 : >>> IleLeuAsnGlnAlaTyrSerValCysLeuLeuPheLeuLysAlaArg : 387 |||||||||||||||||||||..! !!||||||||||||||||||!:! ++IleLeuAsnGlnAlaTyrSerThrSerLeuLeuPheLeuLysAlaLys 62260 : ...agATTCTAAACCAAGCATACTCGACTAGTTTGCTGTTTTTGAAAGCAAAA : 63128 vulgar: gi|805803739|ref|XP_012145291.1| 319 387 . KQ414777.1 62100 63128 + 203 M 52 156 5 0 2 I 0 820 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 62101 63128 203 + . gene_id 2 ; sequence gi|805803739|ref|XP_012145291.1| ; gene_orientation + KQ414777.1 exonerate:protein2genome:local cds 62101 62256 . + . KQ414777.1 exonerate:protein2genome:local exon 62101 62256 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local splice5 62257 62258 . + . intron_id 1 ; splice_site "GT" KQ414777.1 exonerate:protein2genome:local intron 62257 63080 . + . intron_id 1 KQ414777.1 exonerate:protein2genome:local splice3 63079 63080 . + . intron_id 0 ; splice_site "AG" KQ414777.1 exonerate:protein2genome:local cds 63081 63128 . + . KQ414777.1 exonerate:protein2genome:local exon 63081 63128 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 62101 63128 203 + . alignment_id 2 ; Query gi|805803739|ref|XP_012145291.1| ; Align 62101 320 156 ; Align 63081 372 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805803739|ref|XP_012145291.1| PREDICTED: uncharacterized protein LOC105663048 [Megachile rotundata] Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 250 -> 285 Target range: 61693 -> 61798 251 : GlnMetSerSerIleLeuLysAspValLeuAlaProAsnIleGlyValValTyrIleAsn : 270 :::|||!!!! !!!:|||||| ! :!!|||:!!||||||||||||:!!:!!|||:!!||| ArgMetThrIleMetLeuLysLysLeuLeuSerProAsnIleGlyIleLeuTyrValAsn 61694 : aggaTGACTATTATGTTGAAGAAATTACTATCTCCAAACATTGGAATACTTTACGTAAAC : 61751 271 : SerValPheArgPheCysPheLeuSerIleMetValValMetIle : 285 !:!||||||||||||||||||||||||:!!|||:!!:!!! !:!! AsnValPheArgPheCysPheLeuSerLeuMetIleIleThrVal 61752 : AACGTTTTCCGGTTCTGCTTTCTAAGTTTAATGATTATAACGGTA : 61798 vulgar: gi|805803739|ref|XP_012145291.1| 250 285 . KQ414777.1 61693 61798 + 123 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 61694 61798 123 + . gene_id 3 ; sequence gi|805803739|ref|XP_012145291.1| ; gene_orientation . KQ414777.1 exonerate:protein2genome:local cds 61694 61798 . + . KQ414777.1 exonerate:protein2genome:local exon 61694 61798 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 61694 61798 123 + . alignment_id 3 ; Query gi|805803739|ref|XP_012145291.1| ; Align 61694 251 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805808993|ref|XP_012146726.1| PREDICTED: uncharacterized protein LOC105663312 [Megachile rotundata] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 157 -> 245 Target range: 1344678 -> 1344939 158 : TyrArgLeuProPheArgValHisSerPheLeuAspTyrGluAspAsnLeuLysAs : 176 |||..!||||||.!.!:!|||:!! !.!.! !!!: !!!: :!!::!!. TyrGluLeuProMetLysValAsnHisLeuTyrGluValThrGlu---ValArgTh 1344679 : TACGAGCTACCAATGAAAGTGAACCACCTGTACGAAGTGACAGAG---GTGCGGAC : 1344730 177 : nTyrMetLeuMetTyrAlaTyrGlnMetProLeu<->MetPheIleAlaLeuLeuH : 194 .||| |||.!.! !!.!||| :!:||| ! |||!!.:!!.!!:!! ! rTyrAlaLeuPheCysValTyrPheValProThrSerMetLeuLeuThrIleGlyA 1344731 : GTACGCTTTGTTCTGCGTTTACTTCGTACCGACGAGCATGTTACTAACAATCGGTG : 1344787 195 : isIleSerSerIleSerLeuLeuLeuSerLeuValLeuHisValCysGlyLysPhe : 212 ! !.!!:!! !|||||||||:!!!!!|||..!!!!|||:!!|||.!!:!!||| laThrGlyAlaAspSerLeuLeuValThrLeuThrPheHisLeuCysSerGlnPhe 1344788 : CAACTGGCGCCGACAGTCTTCTAGTCACCTTGACTTTCCATCTTTGCAGTCAATTT : 1344841 213 : SerIleLeuSerTyrArgIleGlnAsnIleAlaGluAspSerLysAsnSerPheGl : 231 |||||||||||| |||::::::||||||! !! !!: !!:!!!!.! !|||! SerIleLeuSerSerArgValLysAsnIleAspValGluProGlnLysTyrPhePr 1344842 : TCGATcctgtcgagccgtgtaaaaAATATCGACGTCGAGCCGCAAAAGTATTTCCC : 1344898 232 : nArgArgValLysGluLeuValGluArgHisValGluLeuIle : 245 ! !:!:!!|||! !|||||||||||||||..!||||||:!! o---GlnMetLysAlaLeuValGluArgHisThrGluLeuLeu 1344899 : A---CAAATGAAAGCACTCGTTGAACGGCACACCGAACTTCTA : 1344939 vulgar: gi|805808993|ref|XP_012146726.1| 157 245 . KQ414782.1 1344678 1344939 + 113 M 15 45 G 1 0 M 14 42 G 0 3 M 44 132 G 1 0 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1344679 1344939 113 + . gene_id 1 ; sequence gi|805808993|ref|XP_012146726.1| ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1344679 1344939 . + . KQ414782.1 exonerate:protein2genome:local exon 1344679 1344939 . + . insertions 3 ; deletions 2 KQ414782.1 exonerate:protein2genome:local similarity 1344679 1344939 113 + . alignment_id 1 ; Query gi|805808993|ref|XP_012146726.1| ; Align 1344679 158 45 ; Align 1344724 174 42 ; Align 1344769 188 132 ; Align 1344901 233 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825070|ref|XP_012152457.1| PREDICTED: uncharacterized protein LOC100876377 isoform X1 [Megachile rotundata] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 38 -> 90 Target range: 1345588 -> 1345744 39 : PheSerSerAsnTrpTyrAspIleProValLysTyrGlnLysSerLeuTyrMetMe : 57 !:!! !|||||||||||||||:!!|||! !|||||| !::!|||||| .!. TyrPheSerAsnTrpTyrAspLeuProAspLysTyrThrArgSerLeuIlePheCy 1345589 : TACTTCAGTAATTGGTACGATTTACCAGATAAATACACGCGATCGTTAATATTTTG : 1345643 58 : tThrIleArgCysSerLysAlaCysMetLeuSerAlaGlyGlyLeuTyrAspMetA : 76 ! ! !|||! !..!||| !!! |||!!!|||||| !!!!|||! .!.: sIleAlaArgSerGlnLysProSerTyrLeuThrAlaGlyLysPheTyrValPheS 1345644 : CATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAGCTGGCAAGTTCTACGTGTTCT : 1345700 77 : snIleGluAsnPheGlyLysValArgValAspThrSerThrAsp : 90 :::!!|||!..||||||! |||!!!:!!..! !!:!:::::: erLeuGluThrPheGlyIleValSerLeuSerPheAsnSerGlu 1345701 : CGTTAGAAACATTCGGCATCGTGAGTTTATCTTTTAATagtgaa : 1345744 vulgar: gi|805825070|ref|XP_012152457.1| 38 90 . KQ414782.1 1345588 1345744 + 104 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345589 1345744 104 + . gene_id 1 ; sequence gi|805825070|ref|XP_012152457.1| ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345589 1345744 . + . KQ414782.1 exonerate:protein2genome:local exon 1345589 1345744 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345589 1345744 104 + . alignment_id 1 ; Query gi|805825070|ref|XP_012152457.1| ; Align 1345589 39 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825633|ref|XP_012152700.1| PREDICTED: uncharacterized protein LOC100879986 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 127 -> 211 Target range: 26225 -> 25976 128 : PheAsnTyrIleProLeuIleProProThrLeuAspIleIleLeuProLeuAsnGluThr : 147 |||! ! !:!:|||!!!:!: !!|||! !|||||||||:!!:!!||||||||||||||| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThr 26225 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACG : 26168 148 : ArgProArgGlnGlnLeuPheGlnValAsnTyrIlePhePheAspValAspAspHisPhe : 167 ||| !!||| ! :!!!:!! !!.! ||| !||| !!|||! !||| ! :!! ! ArgAlaArgLeuPheValTyrProAla---TyrTyrPheValAspGluAspLysTyrHis 26167 : CGAGCACGGTTGTTCGTCTATCCAGCT---TACTATTTCGTCGACGAGGACAAATATCAT : 26111 168 : PheAlaIleTyrLeuHisMetSerTrpAlaGlySerLeuThrValPheValIleValThr : 187 !:! !||| !||||||! ! !.!! ! !:!! !:!!! !|||.!! !.!! TyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 26110 : TACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 26051 188 : IleAspSerLeuTyrMetLeuIleIleHisHisAlaSerGlyLeuPheAspValCysGly : 207 !|||:!! !|||:!!! ! !:!:!!.||||||!!!||||||!!.! !:!!...||| CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 26050 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 25991 208 : TyrGlnValGln : 211 !! !|||||| ***LeuValGln 25990 : TAATTAGTTCAA : 25977 vulgar: gi|805825633|ref|XP_012152700.1| 127 211 . LHQN01017803.1 26225 25976 - 127 M 29 87 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25977 26225 127 - . gene_id 1 ; sequence gi|805825633|ref|XP_012152700.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25977 26225 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25977 26225 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25977 26225 127 - . alignment_id 1 ; Query gi|805825633|ref|XP_012152700.1| ; Align 26226 128 87 ; Align 26139 158 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825633|ref|XP_012152700.1| PREDICTED: uncharacterized protein LOC100879986 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 124 -> 211 Target range: 14176 -> 13918 125 : LeuValAlaPheAsnTyrIleProLeuIleProProThrLeuAspIleIleLeuProLeu : 144 :!!:!! !||| ! ! |||:!!! !|||! !! !|||||||||:!!|||||| ! ValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProLys 14176 : GTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAG : 14119 145 : AsnGluThrArgProArgGlnGlnLeuPheGlnValAsnTyrIlePhePheAspValAsp : 164 ||||||:!!||| ! ! ! ! :!!!:!! !!.! ||| !||| !|||! ! !! AsnGluSerArgAspValAlaTyrIleTyrProAla---TyrTyrPheThrAspGluHis 14118 : AACGAGTCACGAGACGTAGCGTACATTTATCCGGCC---TATTATTTCACCGACGAGCAT : 14062 165 : AspHisPhePheAlaIleTyrLeuHisMetSerTrpAlaGlySerLeuThrValPheVal : 184 ! :!! ! ! !||| ! !||||||:!!! !.! ! !:!!..! !!!:!||| LysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrVal 14061 : AAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTG : 14002 185 : IleValThrIleAspSerLeuTyrMetLeuIleIleHisHisAlaSerGlyLeuPheAsp : 204 !|||.!! !|||!!! !|||!!:! !:!!:!:!!.|||!.!!!!||||||!!.! ! TyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAla 14001 : TACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCC : 13942 205 : ValCysGlyTyrGlnValGln : 211 |||! !||| ::::::::: ValSerGly***LysIleArg 13941 : GTGTCCGGgtaaaaaattcga : 13919 vulgar: gi|805825633|ref|XP_012152700.1| 124 211 . LHQN01017803.1 14176 13918 - 103 M 32 96 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13919 14176 103 - . gene_id 2 ; sequence gi|805825633|ref|XP_012152700.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13919 14176 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13919 14176 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 13919 14176 103 - . alignment_id 2 ; Query gi|805825633|ref|XP_012152700.1| ; Align 14177 125 96 ; Align 14081 158 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825633|ref|XP_012152700.1| PREDICTED: uncharacterized protein LOC100879986 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 118 -> 196 Target range: 33714 -> 33483 119 : MetThrLeuLeuSerPheLeuValAlaPheAsnTyrIleProLeuIleProProThrLeu : 138 :!:|||:!!! !! ! :!! !!.!|||::! ! |||||||||||| !! !||| ValThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeu 33714 : GTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTG : 33657 139 : AspIleIleLeuProLeuAsnGluThrArgProArgGlnGlnLeuPheGlnValAsnTyr : 158 |||:!!|||! !||||||||||||:!!||||||||| ! ! !!:!:!!!.! ||| AspLeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAla---Tyr 33656 : GACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCC---TAC : 33600 159 : IlePhePheAspValAspAspHisPhePheAlaIleTyrLeuHisMetSerTrpAlaGly : 178 !!:!|||:!! !||||||:!!!:!!:! !:!! !:!!! ||| !..! ! CysTyrPheAsnProAspAspTyrTyrTyrTyrValValGlyTyrThrSerAlaCysIle 33599 : TGTTACTTCAATCCGGACGACTACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATA : 33540 179 : SerLeuThrValPheValIleValThrIleAspSerLeuTyrMetLeuIleIle : 196 .!!:!!.!!! !.!!|||:!!||| ! !|||! !:!! !!:! !:!!:!! GlyMetAlaGlyLeuValLeuValGlyAlaAspIleIleMetIleHisLeuVal 33539 : GGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATTATGATACATCTTGTA : 33484 vulgar: gi|805825633|ref|XP_012152700.1| 118 196 . LHQN01017803.1 33714 33483 - 100 M 38 114 G 1 0 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33484 33714 100 - . gene_id 3 ; sequence gi|805825633|ref|XP_012152700.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33484 33714 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33484 33714 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 33484 33714 100 - . alignment_id 3 ; Query gi|805825633|ref|XP_012152700.1| ; Align 33715 119 114 ; Align 33601 158 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805805305|ref|XP_012145742.1| PREDICTED: uncharacterized protein LOC105663127 [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 173 Query range: 70 -> 156 Target range: 481971 -> 482229 71 : PheThrSerCysValPheSerThrValValIleMetThrThrTyrHisIleSerProI : 90 ...|||::!! :!!!:! !!:!!|||:!!|||:!!! ! !! !|||!!:||| !. IleThrAlaLeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerP 481972 : attacagcGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTT : 482029 91 : leIleLeuAspLysIleAlaProLeuAsnGluSerArgProIleGlnLeuProValAs : 109 !!:!!|||||| |||!.!||||||||||||!!!||| !! !|||!!!||||||.. heValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSe 482030 : TCGTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATC : 482086 110 : pAlaGluThrPhePheAspLysGluLysHisAlaIleThrThrThrIleThrTyrTyr : 128 . !||| !|||.!!|||:!!:!!|||:!!:!!:!! !! !|||.!! ! ! !:: rMetGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrp 482087 : AATGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGG : 482143 129 : PheTrpIleAlaIleLeuAlaIleIleTyrIleGlyThrGluSerLeuThrIleMetI : 148 |||! .!! !:!!:!!|||! ||| !:!!|||! !|||!!!|||! !:!!||| PheSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetT 482144 : TTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGT : 482203 149 : leCysLeuHisAlaAlaSerLeuPhe : 156 ! !|||||||||||||||||| rpLeuGluHisAlaAlaSerLeuPhe 482204 : GGCTTGAACACGCTGCAAGCTTGTTC : 482229 vulgar: gi|805805305|ref|XP_012145742.1| 70 156 . KQ414815.1 481971 482229 + 173 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481972 482229 173 + . gene_id 1 ; sequence gi|805805305|ref|XP_012145742.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481972 482229 . + . KQ414815.1 exonerate:protein2genome:local exon 481972 482229 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481972 482229 173 + . alignment_id 1 ; Query gi|805805305|ref|XP_012145742.1| ; Align 481972 71 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805805305|ref|XP_012145742.1| PREDICTED: uncharacterized protein LOC105663127 [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 49 -> 159 Target range: 457084 -> 457414 50 : AsnAspValIleLeuGlnIleMetGlnLysHisAsnTyrLeuGlyLysGlnLeuSerT : 69 |||! !:!!:!! !.!. !||| !||| |||::: : AsnValIleLeuThrAsnAspMetLeuLys***CysLeuAsnAspLysLysLysProS 457085 : AACGTCATTTTAACGAATGACATGTTGAAATGATGtctaaatgataaaaaaaaacctt : 457142 70 : hrPhePheThrSerCysValPheSerThrValValIleMetThrThrTyrHisIleSe : 88 :!.!..!!||| !! !..!!:!!!! !!.!:!!:!!!!:||||||! !!.:!!! erMetIleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPh 457143 : cGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTT : 457199 89 : rProIleIleLeuAspLysIleAlaProLeuAsnGluSerArgProIleGlnLeuPro : 107 !||||||:!!||||||! :!:!.!||||||||||||||||||||| !:!!||| ! eProIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTyr 457200 : TCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATAC : 457256 108 : ValAspAlaGluThrPhePheAspLysGluLysHisAlaIleThrThrThrIleThrT : 127 :!! |||||| !||| !!|||! !:!!|||:!! ! ! !! !! ! ! LeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisI 457257 : CTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACA : 457316 128 : yrTyrPheTrpIleAlaIleLeuAlaIleIleTyrIleGlyThrGluSerLeuThrIl : 146 ! ! !! :!! !||| !|||! !! ! ! !!.!!.!||||||||| !|| leIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIl 457317 : TTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTAT : 457373 147 : eMetIleCysLeuHisAlaAlaSerLeuPheGluValThr : 159 |! !! ! ||||||!.!..!.!!||||||:!!:!!||| eThrAsnValLeuHisValCysGlyLeuPheLysLeuThr 457374 : AACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTTACT : 457414 vulgar: gi|805805305|ref|XP_012145742.1| 49 159 . KQ414815.1 457084 457414 + 135 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457085 457414 135 + . gene_id 2 ; sequence gi|805805305|ref|XP_012145742.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457085 457414 . + . KQ414815.1 exonerate:protein2genome:local exon 457085 457414 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457085 457414 135 + . alignment_id 2 ; Query gi|805805305|ref|XP_012145742.1| ; Align 457085 50 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805805305|ref|XP_012145742.1| PREDICTED: uncharacterized protein LOC105663127 [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 66 -> 158 Target range: 475494 -> 475770 67 : LeuSerThrPhePheThrSerCysValPheSerThrValValIleMetThrThrTyrH : 86 :::......... !||| ! |||!:! !!|||:!! !!! !|||! ! ! !! ValGlyAsnIleValThrValLeuValTyrProThrIlePheThrMetIleLeuLeuL 475495 : gttgggaatattgtTACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTC : 475552 87 : isIleSerProIleIleLeuAspLysIleAlaProLeuAsnGluSerArgProIleGl : 105 !.!!||| !!! |||||||||...:!: !|||||||||||||||||||||! ! euPheSerSerLysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTr 475553 : TCTTCTCGTCTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTG : 475609 106 : nLeuProValAspAlaGluThrPhePheAspLysGluLysHisAlaIleThrThrThr : 124 !! !! !::: ||| |||...::::!!:!!|||:!! ! ! !!:!..! pSerLeuIleArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerVal 475610 : GTCTCTGAtacgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTG : 475666 125 : IleThrTyrTyrPheTrpIleAlaIleLeuAlaIleIleTyrIleGlyThrGluSerL : 144 ||| ! ! ! ! !||| !:!:!!!!.!! !! |||:!!!.!||||||:!!: IleTyrGlnThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaI 475667 : ATCTATCAGACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAA : 475726 145 : euThrIleMetIleCysLeuHisAlaAlaSerLeuPheGluVal : 158 !! !! !||| ! ! !|||..! ||||||||||||::: lePheThrMetTrpLeuGlnHisCysIleSerLeuPheGluIle 475727 : TATTTACCATGTGGTTGCAACATTGCATaagtttatttgaaatt : 475770 vulgar: gi|805805305|ref|XP_012145742.1| 66 158 . KQ414815.1 475494 475770 + 121 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475495 475770 121 + . gene_id 3 ; sequence gi|805805305|ref|XP_012145742.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475495 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475495 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475495 475770 121 + . alignment_id 3 ; Query gi|805805305|ref|XP_012145742.1| ; Align 475495 67 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805805305|ref|XP_012145742.1| PREDICTED: uncharacterized protein LOC105663127 [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 280 -> 323 Target range: 479691 -> 479820 281 : TyrAsnThrSerTrpTyrGluThrSerValAlaThrGlnLysLeuLeuGlnMetValI : 300 !:!|||!:!!:!|||||||||||||||:!!.!!! !||||||:!!||| ! ! :!!: PheAsnSerAsnTrpTyrGluThrSerLeuThrIleGlnLysMetLeuTyrThrMetV 479692 : TTTAACAGCAATTGGTATGAAACTTCCTTAACGATCCAGAAAATGTTGTACACCATGG : 479749 301 : leLeuLysSerAsnLysAspLeuThrPheThrPheTyrAsnIlePheAsnAlaSerLe : 319 !:|||!:!|||!:!|||...:!! ! !!||||||!:!....!!!:! !!||||||:! alLeuArgSerSerLysSerMetLeuValThrPhePheGlyPheTyrTyrAlaSerVa 479750 : TGTTGAGAAGCAGTAAATCAATGCTTGTTACGTTTTTCGGGTTTTACTACGCGTCTGT : 479806 320 : uArgGlyPheSer : 323 !!:!||||||||| lGlnGlyPheSer 479807 : GCAAGGTTTTTCA : 479820 vulgar: gi|805805305|ref|XP_012145742.1| 280 323 . KQ414815.1 479691 479820 + 118 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 479692 479820 118 + . gene_id 4 ; sequence gi|805805305|ref|XP_012145742.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 479692 479820 . + . KQ414815.1 exonerate:protein2genome:local exon 479692 479820 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 479692 479820 118 + . alignment_id 4 ; Query gi|805805305|ref|XP_012145742.1| ; Align 479692 281 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805805305|ref|XP_012145742.1| PREDICTED: uncharacterized protein LOC105663127 [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 280 -> 323 Target range: 483211 -> 483340 281 : TyrAsnThrSerTrpTyrGluThrSerValAlaThrGlnLysLeuLeuGlnMetValI : 300 |||!:!!.!!:!|||||||||||||||:!! !! !|||||||||||| !!!::!!! TyrSerAsnAsnTrpTyrGluThrSerIleProLeuGlnLysLeuLeuLeuIleIleM 483212 : TACAGCAATAATTGGTACGAAACGTCCATACCCCTGCAGAAATTACTGTTGATCATCA : 483269 301 : leLeuLysSerAsnLysAspLeuThrPheThrPheTyrAsnIlePheAsnAlaSerLe : 319 !::!!!:!|||! ! ! ..!! !!:!!:! !|||!:!..!.!!!:!!.!||||||:! etMetArgSerIleAspSerCysSerTyrAspPhePheGlyPheTyrThrAlaSerIl 483270 : TGATGAGGAGCATCGATAGTTGCAGTTATGATTTCTTCGGTTTCTACACCGCTTCGAT : 483326 320 : uArgGlyPheSer : 323 !!:!||||||||| eGlnGlyPheSer 483327 : CCAAGGTTTCTCA : 483340 vulgar: gi|805805305|ref|XP_012145742.1| 280 323 . KQ414815.1 483211 483340 + 108 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 483212 483340 108 + . gene_id 5 ; sequence gi|805805305|ref|XP_012145742.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 483212 483340 . + . KQ414815.1 exonerate:protein2genome:local exon 483212 483340 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 483212 483340 108 + . alignment_id 5 ; Query gi|805805305|ref|XP_012145742.1| ; Align 483212 281 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805805305|ref|XP_012145742.1| PREDICTED: uncharacterized protein LOC105663127 [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 73 -> 159 Target range: 464582 -> 464843 74 : CysValPheSerThrValValIleMetThrThrTyrHisIleSerProIleIleLeuA : 93 ||| !!.!! !!..!:!!:!!.!!!!: ! ! !.!.:!!! !||| !||||||| CysPheIleProValIleLeuPheIleCysLeuLeuGluValLeuProAspIleLeuA 464583 : TGCTTCATTCCCGTTATACTGTTCATCTGTTTACTCGAAGTATTGCCAGATATTCTCG : 464640 94 : spLysIleAlaProLeuAsnGluSerArgProIleGlnLeuProValAspAlaGluTh : 112 || !:!!||||||||||||||||||||| !! !|||! ! !:!! !|||||| spValValAlaProLeuAsnGluSerArgSerHisGlnTyrLeuIleThrAlaGluPh 464641 : ACGTGGTTGCGCCCCTCAATGAATCTCGTTCTCATCAATACTTAATTACCGCGGAATT : 464697 113 : rPhePhe<->AspLysGluLysHisAlaIleThrThrThrIleThrTyrTyrPheTrp : 130 !|||.!! |||!....! !:!! !|||..!||| !:!! ! !!.!! ePheIleThrAspSerSerProAsnTyrIleValThrCysValGlyThrAspIleThr 464698 : TTTCATCACTGATAGTTCGCCGAATTATATCGTAACTTGTGTTGGTACGGATATTACT : 464754 131 : IleAlaIleLeuAlaIleIleTyrIleGlyThrGluSerLeuThrIleMetIleCysL : 150 :!! !!!: !!.!! ! ! |||!.!:!!|||!!!!!!|||.!!:!!:!: ! LeuIleMetGlyValThrThrIleIleAlaSerGluThrPheThrPheLeuLeuLeuG 464755 : CTTATCATGGGAGTCACGACAATAATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGC : 464814 151 : euHisAlaAlaSerLeuPheGluValThr : 159 !||| !..!:!!:!!|||:!!:!!||| lnHisIleCysAlaMetPheLysIleThr 464815 : AACATATCTGCGCAATGTTCAAAATCACA : 464843 vulgar: gi|805805305|ref|XP_012145742.1| 73 159 . KQ414815.1 464582 464843 + 101 M 41 123 G 0 3 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464583 464843 101 + . gene_id 6 ; sequence gi|805805305|ref|XP_012145742.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464583 464843 . + . KQ414815.1 exonerate:protein2genome:local exon 464583 464843 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464583 464843 101 + . alignment_id 6 ; Query gi|805805305|ref|XP_012145742.1| ; Align 464583 74 123 ; Align 464709 115 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805821062|ref|XP_012150587.1| PREDICTED: uncharacterized protein LOC100882786 [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 71 -> 129 Target range: 479679 -> 479853 72 : SerIleSerIleTyrAsnThrSerTrpTyrGluThrSerIleAlaThrGlnLysLeuL : 91 |||.!!!!!! !!:!|||!:!!:!|||||||||||||||:!!.!!! !||||||:!!| SerPheCysArgPheAsnSerAsnTrpTyrGluThrSerLeuThrIleGlnLysMetL 479680 : TCCTTTTGCAGATTTAACAGCAATTGGTATGAAACTTCCTTAACGATCCAGAAAATGT : 479737 92 : euGlnMetValIleLeuLysSerAsnGlnGlyPheThrPheThrPheTyrAsnIlePh : 110 || ! ! :!!:!:|||!:!|||!:!:!!..!.!. ! !!||||||!:!....!!!: euTyrThrMetValLeuArgSerSerLysSerMetLeuValThrPhePheGlyPheTy 479738 : TGTACACCATGGTGTTGAGAAGCAGTAAATCAATGCTTGTTACGTTTTTCGGGTTTTA : 479794 111 : eAspAlaSerLeuArgGlyPheSerValLeuPheGlnThrSerValSerTyrPheThr : 129 ! !!||||||:!!!:!||||||||| !:!! !!!. ! !!||| |||::: rTyrAlaSerValGlnGlyPheSerSerValHisHisLeuProValTyrAlaPheSer 479795 : CTACGCGTCTGTGCAAGGTTTTTCATCGGTACATCATCTTCCAGTTtatgctttttct : 479851 vulgar: gi|805821062|ref|XP_012150587.1| 71 129 . KQ414815.1 479679 479853 + 115 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 479680 479853 115 + . gene_id 1 ; sequence gi|805821062|ref|XP_012150587.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 479680 479853 . + . KQ414815.1 exonerate:protein2genome:local exon 479680 479853 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 479680 479853 115 + . alignment_id 1 ; Query gi|805821062|ref|XP_012150587.1| ; Align 479680 72 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805821062|ref|XP_012150587.1| PREDICTED: uncharacterized protein LOC100882786 [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 70 -> 130 Target range: 483196 -> 483376 71 : IleSerIleSerIleTyrAsnThrSerTrpTyrGluThrSerIleAlaThrGlnLysL : 90 :!!!.!!!:!:!! !|||!:!!.!!:!|||||||||||||||||| !! !||||||| ValLysMetAsnArgTyrSerAsnAsnTrpTyrGluThrSerIleProLeuGlnLysL 483197 : GTTAAAATGAACAGATACAGCAATAATTGGTACGAAACGTCCATACCCCTGCAGAAAT : 483254 91 : euLeuGlnMetValIleLeuLysSerAsnGlnGlyPheThrPheThrPheTyrAsnIl : 109 ||||| !!!::!!!!::!!!:!|||! !.!..!!! !!:!!:! !|||!:!..!.! euLeuLeuIleIleMetMetArgSerIleAspSerCysSerTyrAspPhePheGlyPh 483255 : TACTGTTGATCATCATGATGAGGAGCATCGATAGTTGCAGTTATGATTTCTTCGGTTT : 483311 110 : ePheAspAlaSerLeuArgGlyPheSerValLeuPheGlnThrSerValSerTyrPhe : 128 !!:! !||||||:!!!:!|||||||||..!:!! ! !! !||| !!.! !||| eTyrThrAlaSerIleGlnGlyPheSerThrValHisIleIleSerProLysSerPhe 483312 : CTACACCGCTTCGATCCAAGGTTTCTCAACGGTACATATAATTTCCCCAAAAAGTTTT : 483368 129 : ThrVal : 130 !!:!! ProIle 483369 : CCAATC : 483376 vulgar: gi|805821062|ref|XP_012150587.1| 70 130 . KQ414815.1 483196 483376 + 114 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 483197 483376 114 + . gene_id 2 ; sequence gi|805821062|ref|XP_012150587.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 483197 483376 . + . KQ414815.1 exonerate:protein2genome:local exon 483197 483376 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 483197 483376 114 + . alignment_id 2 ; Query gi|805821062|ref|XP_012150587.1| ; Align 483197 71 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805815197|ref|XP_012148421.1| PREDICTED: uncharacterized protein LOC100884043 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 216 -> 264 Target range: 1228551 -> 1228407 217 : TyrAlaThrAsnAsnLysTrpTyrGlnSerSerIleLysAlaArgThrLeuLeuGl : 235 ||| ! !::!::!! !||||||:!! !||| !||| !!:! !:!!:!! TyrArgTyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTy 1228551 : TACAGATACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTA : 1228497 236 : yIleMetLeuAlaLysSerMetLysProLeuGlnLeuThrAlaCysArgIleTyrT : 254 !!!:|||! ! !!:!:!!:!:||||||! ! ||||||||| !! !!:!:||| rMetMetGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrG 1228496 : CATGATGCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACG : 1228440 255 : hrLeuAsnMetGluAsnPheSerThrValArg : 264 !:!!|||||||||||||||:!!!.!|||||| luMetAsnMetGluAsnPheAlaAsnValArg 1228439 : AAATGAACATGGAGAACTTTGCAAACGTTCGT : 1228408 vulgar: gi|805815197|ref|XP_012148421.1| 216 264 . KQ414851.1 1228551 1228407 - 100 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228408 1228551 100 - . gene_id 1 ; sequence gi|805815197|ref|XP_012148421.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228408 1228551 . - . KQ414851.1 exonerate:protein2genome:local exon 1228408 1228551 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228408 1228551 100 - . alignment_id 1 ; Query gi|805815197|ref|XP_012148421.1| ; Align 1228552 217 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825070|ref|XP_012152457.1| PREDICTED: uncharacterized protein LOC100876377 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 232 Query range: 1 -> 84 Target range: 1233562 -> 1233243 2 : AspAlaMetThrPhePheLeuTyrLeuIleAlaGluLysPheHisLeuPheIleLe : 20 !!:|||:!:! !! ! !:!!!:!|||:!!||||||:!!|||||||||||||||:! GluAlaLeuArgCysAlaValPheLeuValAlaGluGlnPheHisLeuPheIleIl 1233562 : GAAGCTCTTAGATGTGCTGTGTTCCTTGTAGCGGAGCAATTTCATTTGTTCATCAT : 1233508 21 : uSerLeuAsnGlyGlnIleLeuLeuAsnHisAlaValAlaLeuThrAspLys{Il} : 38 !|||||| !||||||! !|||:!!:!!|||..!..! !|||:!! ! ! {||} eSerLeuProGlyGlnThrLeuValAspHisCysThrLysLeuSerLysAsp{Il} 1233507 : TAGCTTACCTGGACAGACACTCGTGGATCATTGTACGAAACTATCGAAGGAT{AT} : 1233454 39 : >>>> Target Intron 1 >>>> {e}PheSerSerAsnTrpTyrAspIle : 46 70 bp {|}!:!||||||!..|||||| ! :!! ++ ++{e}TyrSerSerThrTrpTyrLysVal 1233453 : gt.........................ag{A}TACTCTTCCACGTGGTATAAAGTA : 1233360 47 : ProValLysTyrGlnLysSerLeuTyrMetMetThrIleArgCysSerLysAlaCy : 65 |||!.!|||!:!|||::! !:!!|||! !||| !||||||..! !||| !!|| ProAlaLysPheGlnArgValIleTyrThrMetGlnIleArgAlaLeuLysProCy 1233359 : CCGGCAAAATTTCAGCGAGTAATTTACACGATGCAAATAAGGGCTCTAAAGCCGTG : 1233303 66 : sMetLeuSerAlaGlyGlyLeuTyrAspMetAsnIleGluAsnPheGlyLysValA : 84 |:!:|||!!!|||||||||||||||!!:||||||!!:|||||||||!.!!!.|||| sValLeuThrAlaGlyGlyLeuTyrGluMetAsnMetGluAsnPheAlaAsnValA 1233302 : TGTTTTGACTGCAGGTGGATTGTATGAAATGAACATGGAGAACTTTGCAAACGTTC : 1233246 85 : rg : 84 || rg 1233245 : GT : 1233244 vulgar: gi|805825070|ref|XP_012152457.1| 1 84 . KQ414851.1 1233562 1233243 - 232 M 36 108 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233244 1233562 232 - . gene_id 1 ; sequence gi|805825070|ref|XP_012152457.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233453 1233562 . - . KQ414851.1 exonerate:protein2genome:local exon 1233453 1233562 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233451 1233452 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233383 1233452 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233383 1233384 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233244 1233382 . - . KQ414851.1 exonerate:protein2genome:local exon 1233244 1233382 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233244 1233562 232 - . alignment_id 1 ; Query gi|805825070|ref|XP_012152457.1| ; Align 1233563 2 108 ; Align 1233382 39 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825070|ref|XP_012152457.1| PREDICTED: uncharacterized protein LOC100876377 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 157 Query range: 38 -> 106 Target range: 1242796 -> 1242592 39 : PheSerSerAsnTrpTyrAspIleProValLysTyrGlnLysSerLeuTyrMetMe : 57 !:!!:!|||! ||||||.!.! !|||||| ! !||||||! !|||:!!!!::! TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIleVa 1242796 : TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATATAGT : 1242742 58 : tThrIleArgCysSerLysAlaCysMetLeuSerAlaGlyGlyLeuTyrAspMetA : 76 : !||||||! !.!!||| !!|||! ||| !|||||||||||||||!!:|||| lGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluMetA 1242741 : ACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAATGA : 1242685 77 : snIleGluAsnPheGlyLysValArgValAspThrSerThrAspLysProValThr : 94 |||||||||||||||||..!|||||||||::: ... :!! ! snIleGluAsnPheGlySerValArgValAsnIleLysLeuThr***LeuLeuLeu 1242684 : ACATTGAGAATTTTGGATCAGTACgtgttaatataaaattaacataattaCTTCTT : 1242631 95 : PheGluAsnThrLeuMetThrAsnLeuLeuTyrLeu : 106 !:!.!.||||||:!!! |||::::::::: TyrAsnAsnThrIleSerGly***LeuIlePheVal 1242630 : TATAATAATACGATCAGTggttaattaatattcgtt : 1242593 vulgar: gi|805825070|ref|XP_012152457.1| 38 106 . KQ414851.1 1242796 1242592 - 157 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242593 1242796 157 - . gene_id 2 ; sequence gi|805825070|ref|XP_012152457.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1242593 1242796 . - . KQ414851.1 exonerate:protein2genome:local exon 1242593 1242796 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242593 1242796 157 - . alignment_id 2 ; Query gi|805825070|ref|XP_012152457.1| ; Align 1242797 39 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825070|ref|XP_012152457.1| PREDICTED: uncharacterized protein LOC100876377 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 154 Query range: 38 -> 84 Target range: 1228545 -> 1228407 39 : PheSerSerAsnTrpTyrAspIleProValLysTyrGlnLysSerLeuTyrMetMe : 57 !:!||||||!..|||||| ! :!! !!!.!|||!:!|||::! !:!!|||||||| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 58 : tThrIleArgCysSerLysAlaCysMetLeuSerAlaGlyGlyLeuTyrAspMetA : 76 | !||||||..! !||| !!|||!!:|||!!!|||||||||||||||!!:|||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 77 : snIleGluAsnPheGlyLysValArg : 84 ||!!:|||||||||!.!!!.|||||| snMetGluAsnPheAlaAsnValArg 1228433 : ACATGGAGAACTTTGCAAACGTTCGT : 1228408 vulgar: gi|805825070|ref|XP_012152457.1| 38 84 . KQ414851.1 1228545 1228407 - 154 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228408 1228545 154 - . gene_id 3 ; sequence gi|805825070|ref|XP_012152457.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228408 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228408 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228408 1228545 154 - . alignment_id 3 ; Query gi|805825070|ref|XP_012152457.1| ; Align 1228546 39 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825633|ref|XP_012152700.1| PREDICTED: uncharacterized protein LOC100879986 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 378 Query range: 81 -> 207 Target range: 1234569 -> 1234059 82 : PheLysIleLeuLeuAspLeuIleValLysAspTrpGluThrLeu<-><->ThrAs : 98 |||::: ::: ||||||:!:..!!:!!!:|||||| !||| !.!:! PheGlnLysMetTyrAspLeuValThrArgGluTrpGluGlnLeuArgMetAsnAs 1234569 : tttcaaaaaatgtatgaTCTTGTGACAAGAGAGTGGGAGCAGTTGAGGATGAACGA : 1234515 99 : nGluLeuHisValLeuAspLysValThrAlaThrGlyAspLysLeuAlaTyrLeuT : 117 !|||||||||||||||!!: ! :!!||| ! !|||! !||||||||| ! !!!| pGluLeuHisValLeuGluAspIleThrMetGlnGlyGlyLysLeuAlaGlnPheT 1234514 : CGAGTTGCATGTGCTTGAAGACATTACCATGCAAGGTGGTAAACTCGCGCAATTCT : 1234458 118 : yrArg{M} >>>> Target Intron 1 >>>> {et}ThrLeuLeuSerPhe : 124 |||||{!} 126 bp { }||||||||||||||| yrArg{A}++ ++{sn}ThrLeuLeuSerPhe 1234457 : ACAGA{A}gt.........................ag{AT}ACATTACTGTCCTTC : 1234311 125 : LeuValAlaPheAsnTyrIleProLeuIleProProThrLeuAspIleIleLeuPr : 143 :!!|||!.!||| :!!||||||:!! !||| !||||||:!!:!!||||| MetValValPheLeuLeuValProLeuValPheProPheLeuAspValValLeuPr 1234310 : ATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGTCGTCCTTCC : 1234254 144 : oLeuAsnGluThrArgProArgGlnGlnLeuPheGlnValAsnTyrIlePhePheA : 162 |||||||||||||||||||||||||||| !|||::!|||||||||:!!!:!|||| oLeuAsnGluThrArgProArgGlnGlnGlyPheArgValAsnTyrLeuTyrPheA 1234253 : GTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTATATTTCG : 1234197 163 : spValAspAspHisPhePheAlaIleTyrLeuHisMetSerTrpAlaGlySerLeu : 180 ||! !! |||:!!||||||::!:!:|||!!!!!.:!!:!!|||!.!!.! !:!! spGluAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaValVal 1234196 : ACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAGTCGTT : 1234143 181 : ThrValPheValIleValThrIleAspSerLeuTyrMetLeuIleIleHisHisAl : 199 ..!|||.!.:!!|||:!!|||:!!|||||||||||||||:!!|||||||||||||| ValValMetIleIleIleThrValAspSerLeuTyrMetIleIleIleHisHisAl 1234142 : GTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGATAATAATTCACCATGC : 1234086 200 : aSerGlyLeuPheAspValCysGly : 207 |||||||:!!|||! !||||||||| aSerGlyMetPheAlaValCysGly 1234085 : CAGCGGAATGTTCGCCGTGTGCGGG : 1234060 vulgar: gi|805825633|ref|XP_012152700.1| 81 207 . KQ414851.1 1234569 1234059 - 378 M 15 45 G 0 6 M 22 66 S 0 1 5 0 2 I 0 122 3 0 2 S 1 2 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234569 378 - . gene_id 1 ; sequence gi|805825633|ref|XP_012152700.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1234452 1234569 . - . KQ414851.1 exonerate:protein2genome:local exon 1234452 1234569 . - . insertions 6 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234450 1234451 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1234326 1234451 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1234326 1234327 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1234060 1234325 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234325 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234569 378 - . alignment_id 1 ; Query gi|805825633|ref|XP_012152700.1| ; Align 1234570 82 45 ; Align 1234519 97 66 ; Align 1234324 120 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825633|ref|XP_012152700.1| PREDICTED: uncharacterized protein LOC100879986 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 275 Query range: 119 -> 207 Target range: 1229488 -> 1229224 120 : ThrLeuLeuSerPheLeuValAlaPheAsnTyrIleProLeuIleProProThrLe : 138 .!!||||||! ! :!! !!.!||| :!!||||||.!! !|||.!!|| AlaLeuLeuPheAlaMetCysValPheLeuLeuValProLeuPheGlyProAlaLe 1229488 : GCTTTACTCTTCGCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCT : 1229434 139 : uAspIleIleLeuProLeuAsnGluThrArgProArgGlnGlnLeuPheGlnValA : 157 |||||||:!!||||||! !||||||||||||||||||||||||||||||::!|||| uAspIleValLeuProSerAsnGluThrArgProArgGlnGlnLeuPheArgValA 1229433 : GGACATCGTCCTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTA : 1229377 158 : snTyrIlePhePheAspValAspAspHisPhePheAlaIleTyrLeuHisMetSer : 175 ||||||||.!!|||||| !! |||:!!|||||| !:!:|||:!!!!.:!!! ! snTyrIleIlePheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPhe 1229376 : ACTATATAATTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTT : 1229323 176 : TrpAlaGlySerLeuThrValPheValIleValThrIleAspSerLeuTyrMetLe : 194 |||..! !! !:!! !|||.!.!.!|||:!!|||:!!|||||||||||||||:! TrpCysThrIleValLeuValMetAlaIleIleThrValAspSerLeuTyrMetIl 1229322 : TGGTGTACAATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGAT : 1229266 195 : uIleIleHisHisAlaSerGlyLeuPheAspValCysGly : 207 !||||||:!!||||||||||||:!!|||! !:!!|||||| eIleIleTyrHisAlaSerGlyMetPheAlaIleCysGly 1229265 : CATAATTTACCATGCCAGCGGAATGTTCGCTATATGCGGG : 1229225 vulgar: gi|805825633|ref|XP_012152700.1| 119 207 . KQ414851.1 1229488 1229224 - 275 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229488 275 - . gene_id 2 ; sequence gi|805825633|ref|XP_012152700.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229225 1229488 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229488 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229488 275 - . alignment_id 2 ; Query gi|805825633|ref|XP_012152700.1| ; Align 1229489 120 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825633|ref|XP_012152700.1| PREDICTED: uncharacterized protein LOC100879986 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 235 Query range: 119 -> 207 Target range: 1243860 -> 1243599 120 : ThrLeuLeuSerPheLeuValAlaPheAsnTyrIleProLeuIleProProThrLe : 138 ||||||!!!! !|||! !:!! !||| ! .!!|||||||||||||||! !|| ThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleLe 1243860 : ACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATT : 1243806 139 : uAspIleIleLeuProLeuAsnGluThrArgProArgGlnGlnLeuPheGlnValA : 157 ||||:!!:!!! !|||||||||||||||||| !!||| !::::::...::::::. uAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuG 1243805 : GGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgc : 1243749 158 : snTyrIlePhePheAspValAspAspHisPhePheAlaIleTyrLeuHisMetSer : 175 ..|||:!: ||||||:::::: :::|||:::::::::|||:!!:!!! .!! lnTyrLeu---PheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGly 1243748 : aataccTG---TTCGACAtggagaagaatttttattcattatacGTCTACACTGGC : 1243698 176 : TrpAlaGlySerLeuThrValPheValIleValThrIleAspSerLeuTyrMetLe : 194 |||..!..!! !:!!|||:!!.!.||||||:!!|||||||||:!!||||||:!!:! TrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValVa 1243697 : TGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGT : 1243641 195 : uIleIleHisHisAlaSerGlyLeuPheAspValCysGly : 207 !||||||||||||.!!!!!|||||||||! !||||||||| lIleIleHisHisThrCysGlyLeuPheAlaValCysGly 1243640 : AATCATTCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: gi|805825633|ref|XP_012152700.1| 119 207 . KQ414851.1 1243860 1243599 - 235 M 40 120 G 1 0 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243860 235 - . gene_id 3 ; sequence gi|805825633|ref|XP_012152700.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243860 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243860 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243860 235 - . alignment_id 3 ; Query gi|805825633|ref|XP_012152700.1| ; Align 1243861 120 120 ; Align 1243741 161 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825633|ref|XP_012152700.1| PREDICTED: uncharacterized protein LOC100879986 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 220 Query range: 114 -> 207 Target range: 1240100 -> 1239821 115 : TyrLeuTyrArgMetThrLeuLeuSerPheLeuValAlaPheAsnTyrIleProLe : 133 |||! ! ! !:!:..!|||!!!||| ||| ||| :!!|||:: TyrTyrIleSerValValLeuPheSerValLeuPheIlePheLeuValValProIl 1240100 : TATTACATTTCAGTCGTTTTATTTTCcgttttgttcatttttctggTGGTTCcgat : 1240046 134 : uIleProProThrLeuAspIleIleLeuProLeuAsnGluThrArgProArgGlnG : 152 :...|||||| |||||||||:!! !|||||||||||||||||| !!||||||: ePheProProLeuLeuAspIleLeuLysProLeuAsnGluThrArgAlaArgGlnL 1240045 : ttttcctcctcttctggACATTTTAAAACCTTTAAACGAAACCCGAGCACgccaga : 1239989 153 : lnLeuPheGlnValAsnTyrIlePhePheAspValAspAspHisPhePheAlaIle : 170 :::::|||:::|||||||||:!:.!!.!!||| !|||!!:!!. !.!. !! ! ysIlePheLysValAsnTyrLeuIleIleAspArgAspGluGlnAlaLeuIleThr 1239988 : aaatattcaaagttaaTTACCTGATCATTGACAGGGATGAACAAGCTCTGATCACA : 1239935 171 : TyrLeuHisMetSerTrpAlaGlySerLeuThrValPheValIleValThrIleAs : 189 |||!!!|||:!!||||||.!! !! ! ! !! !.!. !:!::!!!:! !!! TyrPheHisLeuSerTrpThrThrIleThrLeuGlyIleSerValLeuSerSerGl 1239934 : TATTTTCACTTGTCTTGGACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGA : 1239878 190 : pSerLeuTyrMetLeuIleIleHisHisAlaSerGlyLeuPheAspValCysGly : 207 :! !:!!|||:!:|||:!!|||||||||.!!||||||||||||! !|||..!||| uLeuIleTyrValLeuLeuIleHisHisThrSerGlyLeuPheAlaValAlaGly 1239877 : ATTGATATACGTCCTTCTTATTCATCATACCAGCGGTCTGTTTGCTGTGGCTGgg : 1239822 vulgar: gi|805825633|ref|XP_012152700.1| 114 207 . KQ414851.1 1240100 1239821 - 220 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240100 220 - . gene_id 4 ; sequence gi|805825633|ref|XP_012152700.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239822 1240100 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240100 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240100 220 - . alignment_id 4 ; Query gi|805825633|ref|XP_012152700.1| ; Align 1240101 115 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825633|ref|XP_012152700.1| PREDICTED: uncharacterized protein LOC100879986 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 199 Query range: 115 -> 207 Target range: 1224300 -> 1224024 116 : LeuTyrArgMetThrLeuLeuSerPheLeuValAlaPheAsnTyrIleProLeuIl : 134 :::::: :!!|||! !! ! !!|||:!!!.!!:!! !.!!|||||||| IlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLeuIl 1224300 : attttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGAT : 1224246 135 : eProProThrLeuAspIleIleLeuProLeuAsnGluThrArgProArgGlnGlnL : 153 | !|||..!||||||:!!:!! !||||||||||||||||||||||||::!! | eAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLeuL 1224245 : AAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTT : 1224189 154 : euPheGlnValAsnTyrIlePhePheAspValAspAspHisPhePheAlaIleTyr : 171 ||.!!! !|||!:!|||||||||.!.|||! ! !!!!:||||||!:!::!:!: !! euLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValAsn 1224188 : TGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAAT : 1224135 172 : LeuHisMetSerTrpAlaGlySerLeuThrValPheValIleValThrIleAspSe : 190 !!!|||:!:! ! ::!! !! !! ! !! !.!.:!!|||:!!.!!:!:|||! PheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAspMe 1224134 : TTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATAT : 1224078 191 : rLeuTyrMetLeuIleIleHisHisAlaSerGlyLeuPheAspValCysGly : 207 !||||||!!: !|||||| !||| !!!!|||||||||! ||||||||| tLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaValCysGly 1224077 : GTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: gi|805825633|ref|XP_012152700.1| 115 207 . KQ414851.1 1224300 1224024 - 199 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224300 199 - . gene_id 5 ; sequence gi|805825633|ref|XP_012152700.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224300 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224300 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224300 199 - . alignment_id 5 ; Query gi|805825633|ref|XP_012152700.1| ; Align 1224301 116 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805823875|ref|XP_012151894.1| PREDICTED: uncharacterized protein LOC105663983 [Megachile rotundata] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 289 Query range: 86 -> 220 Target range: 4447 -> 4045 87 : ValLeuGluLeuThrGluAspValCysLysAsnAlaAsnAspSerAlaArgArgLeuPheGl : 107 :!!:!!||| !! !:!! ! !|||:!!!..|||!!. ! !! !||| !:!!||||| LeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheGl 4447 : CTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGACGTCTTCCA : 4387 108 : nArgTyrMetGluGlnPheSerThrPheTyrGlyValLeuIleIleTrpThrTyrAlaThrG : 128 |||||||:!:.!.:!! ||| |||||| ... ! !||| !||| !|||! nArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheTyrLeuThrA 4386 : ACGATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTTACTTAACAG : 4324 129 : lyMetThrPheIleLeuLysAlaLeuIleMetSerAspProTyrProLeuAsnAlaIleTyr : 148 .!!!:! !.!.:!!||| !::!|||:!!!!:|||||||||!:!||| !||||||:!!||| laIleIleMetValLeuGlySerLeuLeuIleSerAspProPheProThrAsnAlaValTyr 4323 : CAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACCAACGCAGTATAT : 4264 149 : ProPheArgValAspTyrGlnProLeuLysThrIleIlePheLeuHisGlnSerLeuTyrIl : 169 ||||||! !|||:!!!:!:!!||||||!:!!:!|||||||||:!!|||||||||!!! ! ProPheProValAsnPheGluProLeuArgSerIleIlePheMetHisGlnSerPheValGl 4263 : CCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCACCAATCGTTCGTTGG : 4201 170 : eCysAsnValSerGlyAsnSerSerValAsnValPheCysGlyPheLeuLeuPhePheAlaA : 190 ! .!. !:!!!.!:!!:!!|||:!!||||||.!!! !!.!.!.||||||.!.|||.!!. yIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeuLeuLeuLeuPheThrT 4200 : CATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTGTTATTGCTATTCACTA : 4138 191 : laAlaArgPheGluIleLeuLysMetLysLeuArgAsnValLysAsnThrGluAspLeuIle : 210 !!|||||||||||||||||| !! !:!!||||||||||||!!.:!!! !||| |||||| hrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAspIleGluThrLeuIle 4137 : CAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGATATCGAAACACTGATT : 4078 211 : IleArgMetGluGluTyrTyrValValLys : 220 ! !!!|||:!!:!!|||! ..!|||::! LysSerMetLysLysTyrSerThrValArg 4077 : AAGAGTATGAAAAAGTATTCGACTGTGCGG : 4046 vulgar: gi|805823875|ref|XP_012151894.1| 86 220 . LHQN01020543.1 4447 4045 - 289 M 134 402 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4046 4447 289 - . gene_id 1 ; sequence gi|805823875|ref|XP_012151894.1| ; gene_orientation . LHQN01020543.1 exonerate:protein2genome:local cds 4046 4447 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4046 4447 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4046 4447 289 - . alignment_id 1 ; Query gi|805823875|ref|XP_012151894.1| ; Align 4448 87 402 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805805305|ref|XP_012145742.1| PREDICTED: uncharacterized protein LOC105663127 [Megachile rotundata] Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 78 -> 158 Target range: 22056 -> 22296 79 : ValValIleMetThrThrTyrHisIleSerProIleIleLeuAspLysIleAlaProLeu : 98 :!!! !:!!.!...!||| :!! !||||||:!!:!! !!:!||| !|||! ! IleGlyLeuPheValThrAlaThrLeuLeuProIleValMetCysArgIleGlnProArg 22057 : ATAGGACTTTTCGTTACAGCGACGCTTCTACCAATCGTAATGTGTAGAATACAGCCACGT : 22114 99 : AsnGluSerArgProIleGlnLeuProValAspAlaGluThrPhePheAspLysGluLys : 118 |||||||||!.! ! ! :!!||| !!.!....||| |||||||||:!!|||||| AsnGluSerHisValHisThrIleProPheGlnGlyGluTyrPhePheAspGlnGluLys 22115 : AACGAATCTCACGTACACACTATTCCGTTTCAaggggaatattttttcgaccAAGAGAAA : 22174 119 : HisAlaIleThrThrThrIleThrTyrTyrPheTrpIleAlaIleLeuAlaIleIleTyr : 138 :!! !:!: !! !! !:!: ! .!! :!!.!!||| ! ! !||| ! AsnMetValPheIleIleLeuHisMetIleLeuThrValThrIleThrHisCysIleAla 22175 : AATATGGTGTTCATTATACTGCACATGATACTCACAGTTACAATCACACATTGCATTGCT : 22234 139 : IleGlyThrGluSerLeuThrIleMetIleCysLeuHisAlaAlaSerLeuPheGluVal : 158 :!! !|||!!:! !:!! !:!!:!::!! !:!!||||||..!:!!||||||! ||| ValMetThrAspMetIleLeuLeuValLeuThrMetHisAlaCysAlaLeuPheAlaVal 22235 : GTAATGACTGATATGATTTTGCTAGTTTTAACCATGCATGCCTGTGCCTTGTTCGCTGTT : 22294 vulgar: gi|805805305|ref|XP_012145742.1| 78 158 . KQ415081.1 22056 22296 + 114 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 22057 22296 114 + . gene_id 1 ; sequence gi|805805305|ref|XP_012145742.1| ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 22057 22296 . + . KQ415081.1 exonerate:protein2genome:local exon 22057 22296 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 22057 22296 114 + . alignment_id 1 ; Query gi|805805305|ref|XP_012145742.1| ; Align 22057 79 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805815197|ref|XP_012148421.1| PREDICTED: uncharacterized protein LOC100884043 isoform X1 [Megachile rotundata] Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 10 -> 100 Target range: 32476 -> 32746 11 : PheValThrAlaPheLeuPheGlyValIleThrProPheAlaAlaThrThrCysIleLeu : 30 .!!..!|||!.!|||:!!!:! !! !||| ! !!!:!||| !..! !! !:!:! ! IleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuPro 32477 : aTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCG : 32534 31 : AsnIleAlaAspAlaValGlyPheTyrAsnLeuSerGlyGluArgProLeuThrPheArg : 50 !!||| !|||!.!:!!!.! ! ||| !||| !!.!.!.! !||| !!!:! ! TyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAla 32535 : TACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCC : 32594 51 : IleGluHisPheValAspValAspLysTyrTyrTyrProLeuMetValHisSerTyrPhe : 70 !|||:!!||||||||| ...||||||::: |||:!! !:!!|||! ! ! GlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGly 32595 : GGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGG : 32654 71 : GlyThrValAlaPheThrAlaValValValAlaValAspSerIleIleIleIlePheVal : 90 !..!..! ! ! !.!!|||!.!..!|||||||||||||||...|||...|||::! ThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMet 32655 : ACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatG : 32714 91 : IleHisGluCysGlyLeuCysGluIleLeu : 100 .!!|||! |||!.! !! !.!.|||||| PheHisValCysAlaLysPheAsnIleLeu 32715 : TTCCACGTTTGCGCCAAATTCAATATTCTC : 32746 vulgar: gi|805815197|ref|XP_012148421.1| 10 100 . KQ415081.1 32476 32746 + 116 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32477 32746 116 + . gene_id 1 ; sequence gi|805815197|ref|XP_012148421.1| ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32477 32746 . + . KQ415081.1 exonerate:protein2genome:local exon 32477 32746 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32477 32746 116 + . alignment_id 1 ; Query gi|805815197|ref|XP_012148421.1| ; Align 32477 11 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825633|ref|XP_012152700.1| PREDICTED: uncharacterized protein LOC100879986 [Megachile rotundata] Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 124 -> 207 Target range: 32503 -> 32749 125 : LeuValAlaPheAsnTyrIleProLeuIleProProThrLeuAspIleIleLeuProLeu : 144 :!! !!:!!!:! :!:! !!!!:!:||| !! !:!!|||:!:||| !|||||| IlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeu 32504 : ATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTA : 32561 145 : AsnGluThrArgProArgGlnGlnLeuPheGlnValAsnTyrIlePhePheAspValAsp : 164 ||||||:!!|||! !!.! !! !! !!:! ! !.!.||| ||| !!||| ... AsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyr---PheValAspGlnGln 32562 : AACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATAT---TTCGTCGACcagcaa : 32618 165 : AspHisPhePheAlaIleTyrLeuHisMetSerTrpAlaGlySerLeuThrValPheVal : 184 :::|||... !||| ||||||||| ! !!.!!! !!!!||| !:!! ||| LysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrVal 32619 : aaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTC : 32678 185 : IleValThrIleAspSerLeuTyrMetLeuIleIleHisHisAlaSerGlyLeuPheAsp : 204 !..!.!!:::||||||:::::::::......::: !|||!.!!!!!.! !|||:!! AlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsn 32679 : GCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAAT : 32738 205 : ValCysGly : 207 :!! !||| IleLeuGly 32739 : ATTCTCGGG : 32749 vulgar: gi|805825633|ref|XP_012152700.1| 124 207 . KQ415081.1 32503 32749 + 101 M 34 102 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32504 32749 101 + . gene_id 1 ; sequence gi|805825633|ref|XP_012152700.1| ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32504 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32504 32749 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32504 32749 101 + . alignment_id 1 ; Query gi|805825633|ref|XP_012152700.1| ; Align 32504 125 102 ; Align 32606 160 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825633|ref|XP_012152700.1| PREDICTED: uncharacterized protein LOC100879986 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 127 -> 211 Target range: 5005 -> 5254 128 : PheAsnTyrIleProLeuIleProProThrLeuAspIleIleLeuProLeuAsnGluThrAr : 148 |||! ! !:!:|||!!!:!: !!|||! !|||||||||:!!:!!||||||||||||||||| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5006 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5066 149 : gProArgGlnGlnLeuPheGlnValAsnTyrIlePhePheAspValAspAspHisPhePheA : 169 | !!||| ! :!!!:!! !!.! ||| !||| !!|||! !||| ! :!! !!:! gAlaArgLeuPheValTyrProAla---TyrTyrPheValAspGluAspLysTyrHisTyrL 5067 : AGCACGGTTGTTCGTCTATCCAGCT---TACTATTTCGTCGACGAGGACAAATATCATTACT : 5126 170 : laIleTyrLeuHisMetSerTrpAlaGlySerLeuThrValPheValIleValThrIleAsp : 189 !||| !||||||! ! !.!! ! !:!! !:!!! !|||.!! !.!! !||| euIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAsp 5127 : TGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGAT : 5186 190 : SerLeuTyrMetLeuIleIleHisHisAlaSerGlyLeuPheAspValCysGlyTyrGlnVa : 210 :!! !|||:!!! ! !:!:!!.||||||!!!||||||!!.! !:!!...|||!! !|| AlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***LeuVa 5187 : GCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGT : 5249 211 : lGln : 211 |||| lGln 5250 : TCAA : 5254 vulgar: gi|805825633|ref|XP_012152700.1| 127 211 . LHQN01025741.1 5005 5254 + 127 M 29 87 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5006 5254 127 + . gene_id 1 ; sequence gi|805825633|ref|XP_012152700.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5006 5254 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5006 5254 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 5006 5254 127 + . alignment_id 1 ; Query gi|805825633|ref|XP_012152700.1| ; Align 5006 128 87 ; Align 5093 158 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805825633|ref|XP_012152700.1| PREDICTED: uncharacterized protein LOC100879986 [Megachile rotundata] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 127 -> 211 Target range: 5657 -> 5408 128 : PheAsnTyrIleProLeuIleProProThrLeuAspIleIleLeuProLeuAsnGluThrAr : 148 |||! ! !:!:|||!!!:!: !!|||! !|||||||||:!!:!!||||||||||||||||| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5657 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5597 149 : gProArgGlnGlnLeuPheGlnValAsnTyrIlePhePheAspValAspAspHisPhePheA : 169 | !!||| ! :!!!:!! !!.! ||| !||| !!|||! !||| ! :!! !!:! gAlaArgLeuPheValTyrProAla---TyrTyrPheValAspGluAspLysTyrArgTyrL 5596 : AGCACGGTTGTTCGTCTATCCAGCT---TACTATTTCGTCGACGAGGACAAATATCGTTACT : 5537 170 : laIleTyrLeuHisMetSerTrpAlaGlySerLeuThrValPheValIleValThrIleAsp : 189 !||| !||||||! ! !.!! ! !:!! !:!!! !|||.!! !.!! !||| euIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAsp 5536 : TGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGAT : 5477 190 : SerLeuTyrMetLeuIleIleHisHisAlaSerGlyLeuPheAspValCysGlyTyrGlnVa : 210 :!! !|||:!!! ! !:!:!!.||||||!!!||||||!!.! !:!!...|||!! !|| AlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***LeuVa 5476 : GCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGT : 5414 211 : lGln : 211 |||| lGln 5413 : TCAA : 5409 vulgar: gi|805825633|ref|XP_012152700.1| 127 211 . LHQN01028732.1 5657 5408 - 125 M 29 87 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5409 5657 125 - . gene_id 1 ; sequence gi|805825633|ref|XP_012152700.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5409 5657 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5409 5657 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5409 5657 125 - . alignment_id 1 ; Query gi|805825633|ref|XP_012152700.1| ; Align 5658 128 87 ; Align 5571 158 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: KQ414588.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold11, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 332 -> 416 Target range: 776375 -> 776688 333 : AlaPheArgIleValMetPheLeuCysGlyGlnGlnPheHisLeuTyrAlaLeuSerL : 352 !.!!:! !:!: !! |||:!! !||| ! ! |||:!! ! !|||!!!| ValTyrLeuLeuCysThrPheIleMetIleGlnLeuValHisValLeuTyrLeuThrL 776376 : GTGTACTTATTGTGCACATTTATCATGATTCAATTGGTACACGTACTTTATCTAACTC : 776433 353 : euProGlyGlnGluLeuMetAspArgSerAlaGlyLeuIleAspAla{Il} >>>> : 368 ||||||||||| :!!!!:||| !!:!! !! !:!! !!!::!!{||} euProGlyGlnPheValIleAspAlaAsnGluGluIleSerGluSer{Il}++ 776434 : TTCCAGGACAATTCGTGATCGACGCGAACGAGGAAATCTCCGAATCG{AT}gt..... : 776485 369 : Target Intron 1 >>>> {e}TyrSerSerLysTrpTyrGlnThrProIleLys : 379 61 bp {|}||||||:!! !||||||.!.!:! !! !:! ++{e}TyrSerAlaLeuTrpTyrAsnSerAspLysArg 776486 : ....................ag{A}TACAGCGCTTTGTGGTATAACAGCGACAAGAGA : 776575 380 : PheGlnArgValLeuGluIleMetGlnIleArgCysSerArgProCysLysLeuThrA : 399 ||| !:!!!!!! !:!! ! !! !!.!||| ! ! !! !:!!:!!|||| ThrGlnSerLeuPheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrA 776576 : ACGCAATCGTTGTTTGTATTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAACAG : 776635 400 : laGlyGlyLeuTyrGluMetAsnIleGluAsnPheGlySerMetIleLysThr : 416 ||||||||||| ! !||||||:!::!!!:!|||..!..!:!:! !::::!! laGlyGlyLeuIleThrMetAsnLeuGlnSerPheSerGluValThrArgSer 776636 : CCGGTGGACTAATTACAATGAACTTGCAAAGTTTCTCAGAGGTAACACGTTCA : 776688 vulgar: gi|805795905|ref|XP_012143137.1| 332 416 . KQ414588.1 776375 776688 + 114 M 35 105 S 0 2 5 0 2 I 0 57 3 0 2 S 1 1 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414588.1 exonerate:protein2genome:local gene 776376 776688 114 + . gene_id 1 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation + KQ414588.1 exonerate:protein2genome:local cds 776376 776482 . + . KQ414588.1 exonerate:protein2genome:local exon 776376 776482 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local splice5 776483 776484 . + . intron_id 1 ; splice_site "GT" KQ414588.1 exonerate:protein2genome:local intron 776483 776543 . + . intron_id 1 KQ414588.1 exonerate:protein2genome:local splice3 776542 776543 . + . intron_id 0 ; splice_site "AG" KQ414588.1 exonerate:protein2genome:local cds 776544 776688 . + . KQ414588.1 exonerate:protein2genome:local exon 776544 776688 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local similarity 776376 776688 114 + . alignment_id 1 ; Query gi|805795905|ref|XP_012143137.1| ; Align 776376 333 105 ; Align 776545 369 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: KQ414588.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold11, whole genome shotgun sequence Model: protein2genome:local Raw score: 213 Query range: 283 -> 367 Target range: 776378 -> 776691 284 : TyrGluTyrIleValPheLeuThrIleGlnLeuLeuHisIlePhePheLeuAlaIleG : 303 ||| !! !..!|||:!!! !|||||||||:!!|||:!!.!!!:!|||.!!:!!! TyrLeuLeuCysThrPheIleMetIleGlnLeuValHisValLeuTyrLeuThrLeuP 776379 : TACTTATTGTGCACATTTATCATGATTCAATTGGTACACGTACTTTATCTAACTCTTC : 776436 304 : lnGlyGlnPheMetIleAsnArgThrAspIleValTyrAsnGln{Il} >>>> Tar : 318 !|||||||||:!!|||:!! !!.!!!: !:!!! !.!...!{||} roGlyGlnPheValIleAspAlaAsnGluGluIleSerGluSer{Il}++ 776437 : CAGGACAATTCGTGATCGACGCGAACGAGGAAATCTCCGAATCG{AT}gt........ : 776485 319 : get Intron 1 >>>> {e}TyrGluGlyGlnTrpTyrAsnSerValProLysThr : 330 61 bp {|}|||...!.! !||||||||||||! ! !!:!||| ++{e}TyrSerAlaLeuTrpTyrAsnSerAspLysArgThr 776486 : .................ag{A}TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACG : 776578 331 : GlnGluLeuPheIleLeuAlaLeuArgThrAlaMetAsnProProGlnIleThrAlaG : 350 |||..!||||||:!!||||||||||||!.!..!:!:::! !!|||||||||||||||| GlnSerLeuPheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaG 776579 : CAATCGTTGTTTGTATTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCG : 776638 351 : lyGlyValIleAlaMetAsnLeuGlnThrPheAlaGluValValLysValSer : 367 |||||:!!|||.!!||||||||||||!:!|||:!!||||||..!::: !||| lyGlyLeuIleThrMetAsnLeuGlnSerPheSerGluValThrArgSerSer 776639 : GTGGACTAATTACAATGAACTTGCAAAGTTTCTCAGAGGTAACACGTTCATCG : 776691 vulgar: gi|805793799|ref|XP_012142565.1| 283 367 . KQ414588.1 776378 776691 + 213 M 34 102 S 0 2 5 0 2 I 0 57 3 0 2 S 1 1 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414588.1 exonerate:protein2genome:local gene 776379 776691 213 + . gene_id 1 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation + KQ414588.1 exonerate:protein2genome:local cds 776379 776482 . + . KQ414588.1 exonerate:protein2genome:local exon 776379 776482 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local splice5 776483 776484 . + . intron_id 1 ; splice_site "GT" KQ414588.1 exonerate:protein2genome:local intron 776483 776543 . + . intron_id 1 KQ414588.1 exonerate:protein2genome:local splice3 776542 776543 . + . intron_id 0 ; splice_site "AG" KQ414588.1 exonerate:protein2genome:local cds 776544 776691 . + . KQ414588.1 exonerate:protein2genome:local exon 776544 776691 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local similarity 776379 776691 213 + . alignment_id 1 ; Query gi|805793799|ref|XP_012142565.1| ; Align 776379 284 102 ; Align 776545 319 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414601.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold45, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 308 -> 392 Target range: 1068509 -> 1068192 309 : SerTyrAlaIleIleTyrAlaSerMetSerPheAsnIlePheIlePheCysTyrIl : 327 !!!|||!.!:!: ! ! !! !:!:!!!! :!!!:!:!:!:!! !:!|| ThrTyrValLeuTyrIleLeuLeuValThrSerLeuLeuTyrLeuTyrSerPheIl 1068509 : ACATACGTTTTGTACATTTTGTTAGTCACGTCGTTGTTATACTTGTACTCGTTCAT : 1068455 328 : eGlyGluArgLeuThrGluGln >>>> Target Intron 1 >>>> CysLy : 336 |||||||||||||.!! ! :!! 65 bp ! eGlyGluArgLeuAlaTyrGlu++ ++SerTh 1068454 : AGGTGAACGATTGGCATACGAGgt.........................agtCGAC : 1068363 337 : sLysValGlyGluLysAlaTyrSerValGluTrpTyrArgLeuSerHisArgThrA : 355 !|||||| !||| ! !|||..!..!|||||| ! ..!|||||| !|||!.! rLysValThrGluAlaTyrTyrAspThrGluTrpGlnGluLeuSerValArgAsnG 1068362 : GAAAGTGACCGAAGCGTACTATGATACCGAGTGGCAAGAATTATCGGTCCGTAATC : 1068306 356 : laLeuSerLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAla : 373 ! ! !|||:!!:!: !!!: !! !.!! !!! ..!:!! ! :!!|||||| lnLysLeuLeuLeuLeuAlaMetArgSerGlyArgArgThrLeuTyrLeuThrAla 1068305 : AAAAGCTGTTGCTTCTTGCCATGCGTTCTGGACGAAGAACGTTATACCTTACAGCT : 1068252 374 : GlyLysIleIleArgIleSerLeuAlaThrPheGlyAspValSerIleLysThrLe : 392 ||||||:!: !!.!.!!|||||| ! !||| ! !!|||||||||! ...:: GlyLysValTyrAsnPheSerLeuTyrGlyPheIleHisValSerIleThrAsnIl 1068251 : GGAAAAGTGTACAATTTCTCCTTGTACGGTTTTATCCATGTAAGTATTAcgaatat : 1068195 393 : u : 392 : e 1068194 : t : 1068193 vulgar: gi|805766364|ref|XP_012135240.1| 308 392 . KQ414601.1 1068509 1068192 - 104 M 26 78 5 0 2 I 0 61 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414601.1 exonerate:protein2genome:local gene 1068193 1068509 104 - . gene_id 1 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation + KQ414601.1 exonerate:protein2genome:local cds 1068432 1068509 . - . KQ414601.1 exonerate:protein2genome:local exon 1068432 1068509 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local splice5 1068430 1068431 . - . intron_id 1 ; splice_site "GT" KQ414601.1 exonerate:protein2genome:local intron 1068367 1068431 . - . intron_id 1 KQ414601.1 exonerate:protein2genome:local splice3 1068367 1068368 . - . intron_id 0 ; splice_site "ag" KQ414601.1 exonerate:protein2genome:local cds 1068193 1068366 . - . KQ414601.1 exonerate:protein2genome:local exon 1068193 1068366 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local similarity 1068193 1068509 104 - . alignment_id 1 ; Query gi|805766364|ref|XP_012135240.1| ; Align 1068510 309 78 ; Align 1068367 335 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759608|ref|XP_012152319.1| PREDICTED: uncharacterized protein LOC100884055 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 417 Query range: 0 -> 233 Target range: 1053857 -> 1052542 1 : MetPheArgAsnIleThrProGluLysAlaIleAlaPheThrArgMetSerValAl : 19 |||!!.!:!.!.:!:||||||||||||!.!|||! !.!!! ! !!.!.|||||||| MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : aProAlaValPheLeuProLeuSerSerGlnThrThrLysLeuLeuThrThrGlyT : 38 |! !||||||! !! !||||||||||||....!!!:!||| !! !..!......: aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 39 : yrLysValPheLysIleLeuValLeuLeuAsnSerPheLeuPheLeuLeuProLeu : 56 ::|||:::...:::||| ! !:!!!:!:!!.!!:!!!!.|||||||||||| heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 57 : IleAsnAlaLeuTyrThr<->TyrAsnAspProAlaAsnValSerGluSerIleCy : 74 :!: !!:!! !||| ! !:!:!!||| ! ! !:!!|||:!!|||||||| LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 75 : sPheLeuLeuAlaGluValGlnPheIleValAsnThrIleIleSerIleThrHisT : 93 |!!.! !:!!!.!! !!|||.!.|||:!!.!.|||:!!|||!!!.!!|||:!!| sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCysPheThrAsnT 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGTTTCACCAACT : 1053578 94 : yrAspArgPheGln >>>> Target Intron 1 >>>> GlyValValGluG : 102 |||||! !.!.||| 613 bp !!:!!:!! !! yrAspLeuLeuGln++ ++ArgIleIleThrG 1053577 : ACGACCTTCTGCAGgt.........................agCGAATAATTACAG : 1052938 103 : lyMetGlnThrTyrCysLysAsnAlaAsnValArgGluArgValIleLeuGlnTrp : 120 !||| |||||| !|||.!.|||.!. ! !||||||! !||||||!!. luMetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLeuHisAsn 1052937 : AAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCACAAC : 1052884 121 : TyrValAspGlnPheSerThrPheTyrGlyValSerAlaThrTrpPheTyrLeuTh : 139 |||:!!.!.:!!! !!.! !|||||||||! !||| !! !||| |||||| TyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrTyrLeuCy 1052883 : TATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACATACCTCTG : 1052827 140 : rAlaIleLeuValIleLeuGlyThrPhePheSerSerHisProPheProThrAsnA : 158 !|||! !! ! !!:!!|||||| !! !! !! ! !!:!!|||||||||!:!!:!| sAlaThrCysPheValLeuGlyProValValLeuProAsnProPheProSerSerA 1052826 : TGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGCAGTG : 1052770 159 : laValTyrProIleAlaValAspTyrGlnProLeuMetSerIleValPheLeuHis : 176 ||! !||||||.!! !|||:!! ! !|||:!!! :!!||||||!:!|||||| laGluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyrLeuHis 1052769 : CAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTACCTGCAC : 1052716 177 : GlnSerValIleGlyLeuGlnPheSerAlaThrValCysValSerValLeuCysAl : 195 |||||| !!|||.!!!!!|||!:!|||||| !:!!|||||||||:!!!!! ! || GlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePheGlyAl 1052715 : CAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTTCGGAGC : 1052659 196 : aLeuLeuLeuLeuPheAlaSerAlaArgPheGluIleLeuLysMetGluLeuArgG : 214 ||||||||||! !.!!.!!:!!|||||||||.!. !|||! :!!|||:!!!:!: aLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluValGlnG 1052658 : TCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTTCAAC : 1052602 215 : luValLysLysProSerGluLeuIleLysCysMetGluLysTyrTyrThrValArg : 232 !! !..!!.. ! ! !||||||! |||:!::!!||| ! !:!!||| lnSerSerSerIleHisMetLeuIleIleCysValLysLysGlnLeuLeuLeuArg 1052601 : AAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCTACTACTGAGG : 1052548 233 : Arg : 233 ||| Arg 1052547 : AGG : 1052543 vulgar: gi|805759608|ref|XP_012152319.1| 0 233 . KQ414618.1 1053857 1052542 - 417 M 62 186 G 0 3 M 35 105 5 0 2 I 0 609 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1052543 1053857 417 - . gene_id 1 ; sequence gi|805759608|ref|XP_012152319.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1053564 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053564 1053857 . - . insertions 3 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1053562 1053563 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052951 1053563 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052951 1052952 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052543 1052950 . - . KQ414618.1 exonerate:protein2genome:local exon 1052543 1052950 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1052543 1053857 417 - . alignment_id 1 ; Query gi|805759608|ref|XP_012152319.1| ; Align 1053858 1 186 ; Align 1053669 63 105 ; Align 1052951 98 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759608|ref|XP_012152319.1| PREDICTED: uncharacterized protein LOC100884055 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 389 Query range: 93 -> 233 Target range: 1029185 -> 1028765 94 : AspArgPheGlnGlyValValGluGlyMetGlnThrTyrCysLysAsnAlaAsnVa : 112 |||! !!!.||| !:!!:!!|||! !|||:!!! !! !|||:!!!..|||!!. AspThrLeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysPr 1029185 : GACACGTTGCAGAAACTAATCGAAGAAATGAAGATTTGCTGTGAAACAGCGAAACC : 1029131 113 : lArgGluArgValIleLeuGlnTrpTyrValAspGlnPheSerThrPheTyrGlyV : 131 ! !||||||! !:!!!!!||| ! |||||||||:!!!:!||| !||||||! !. oTyrGluArgAspValPheGlnArgTyrValAspLysTyrSerLeuPheTyrValT 1029130 : ATACGAAAGAGACGTCTTTCAACGATACGTCGATAAATACTCTTTATTTTACGTAA : 1029074 132 : alSerAlaThrTrpPheTyrLeuThrAlaIleLeuValIleLeuGlyThrPhePhe : 149 .!!!!:!!:!!||||||||||||||||||:!!:!!:!!:!!||||||!:! .!! hrCysSerSerTrpPheTyrLeuThrAlaValIleMetValLeuGlySerArgIle 1029073 : CATGTTCGTCGTGGTTTTACTTAACAGCAGTTATTATGGTTCTGGGAAGTCGGATT : 1029020 150 : SerSerHisProPheProThrAsnAlaValTyrProIleAlaValAspTyrGlnPr : 168 ! !||| !!|||||||||||||||||||||||||||.!! !!|||:!!!:!:!!|| IleSerAspProPheProThrAsnAlaValTyrProPheProValAsnPheGluPr 1029019 : ATATCTGATCCTTTTCCAACCAACGCCGTATATCCATTCCCTGTTAACTTTGAACC : 1028963 169 : oLeuMetSerIleValPheLeuHisGlnSerValIleGlyLeuGlnPheSerAlaT : 187 ||||! ||||||:!!|||:!!||||||||| !!:!!|||:!!|||! !:!!||| oLeuArgSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaH 1028962 : CTTGAGAAGTATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCAC : 1028906 188 : hrValCysValSerValLeuCysAlaLeuLeuLeuLeuPheAlaSerAlaArgPhe : 205 !..! !!:!!!:!|||||| !|||||||||||||||||||||:!!||||||||| isThrSerMetAsnValLeuThrAlaLeuLeuLeuLeuPheAlaAlaAlaArgPhe 1028905 : ACACTAGTATGAATGTGCTAACTGCATTGTTATTACTATTTGCTGCAGCTCGTTTC : 1028852 206 : GluIleLeuLysMetGluLeuArgGluValLysLysProSerGluLeuIleLysCy : 224 |||||||||! !||||||||||||.!.|||!.. ! !..! !||||||||||| GluIleLeuMetMetGluLeuArgAsnValSerAspIleGluThrLeuIleLysCy 1028851 : GAGATACTGATGATGGAGCTGAGGAATGTCAGTGACATTGAAACACTGATTAAATG : 1028795 225 : sMetGluLysTyrTyrThrValArgArg : 233 ||||:!!||||||! ! !||||||||| sMetLysLysTyrSerIleValArgArg 1028794 : TATGAAAAAGTATTCGATCGTACGGAGG : 1028766 vulgar: gi|805759608|ref|XP_012152319.1| 93 233 . KQ414618.1 1029185 1028765 - 389 M 140 420 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028766 1029185 389 - . gene_id 2 ; sequence gi|805759608|ref|XP_012152319.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028766 1029185 . - . KQ414618.1 exonerate:protein2genome:local exon 1028766 1029185 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028766 1029185 389 - . alignment_id 2 ; Query gi|805759608|ref|XP_012152319.1| ; Align 1029186 94 420 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759608|ref|XP_012152319.1| PREDICTED: uncharacterized protein LOC100884055 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 369 Query range: 0 -> 233 Target range: 1058517 -> 1057732 1 : MetPheArgAsnIleThrProGluLysAlaIleAlaPheThrArgMetSerValAl : 19 ||| !:!!:!||||||||||||:!!||||||:!!||||||!:!:!!|||||||| MetArgLysSerIleThrProGluGlnAlaIleSerPheThrLysLeuSerValAl 1058517 : ATGAGGAAAAGTATAACGCCGGAACAAGCGATCTCGTTCACGAAACTGAGCGTCGC : 1058463 20 : aProAlaValPheLeuProLeuSerSerGlnThrThrLysLeuLeuThrThrGlyT : 38 | !.!! !! ! !|||! !||| !!! !.!!|||!:! !! !..! ! !! aValThrCysSerTrpProProSerProLeuAlaThrArgThrGlnValLeuLeuP 1058462 : TGTAACTTGTTCGTGGCCACCGTCACCTCTGGCGACCAGAACTCAAGTTTTGCTCT : 1058406 39 : yrLysValPheLysIleLeuValLeuLeuAsnSerPheLeuPheLeuLeuProLeu : 56 :!!!...!!!. !! ! !!.!!!!:!!!:!!!!.!! !.!.|||||||||||| heAsnThrLeuTrpSerThrAlaPheValSerThrIleAlaLeuLeuLeuProLeu 1058405 : TTAATACGTTGTGGAGCACAGCATTCGTTAGCACCATCGCGCTGCTTTTGCCGCTA : 1058352 57 : IleAsnAlaLeuTyrThrTyr<->AsnAspProAlaAsnValSerGluSerIleCy : 74 :!:!:!!.!:!!||| !||| !!.|||||| !! !:!!.!!:!!!!!:!! ! LeuSerGlyIleTyrGluTyrArgLysAspProIleIleLeuGlyLysThrValSe 1058351 : TTGAGCGGAATTTACGAGTACCGTAAAGACCCCATCATTCTTGGGAAAACAGTCAG : 1058295 75 : sPheLeuLeuAlaGluValGlnPheIleValAsnThrIleIleSerIleThrHisT : 93 !.!! !! !|||! !.!||| ! !:!!!!.! !|||!!:!!! ! !!!. rLeuAlaSerAlaValAlaGlnValAlaIleLysMetIleMetCysArgPheGlnG 1058294 : CCTCGCCTCGGCTGTCGCCCAGGTGGCAATCAAAATGATAATGTGCCGTTTCCAGC : 1058238 94 : yrAspArgPheGln >>>> Target Intron 1 >>>> GlyValValGluG : 102 ! ! !:!|||||| 83 bp ! !:!! ! ! lnLysGlnPheGln++ ++ValLeuTyrPheA 1058237 : AGAAGCAATTCCAGgt.........................agGTATTGTACTTCG : 1058128 103 : lyMetGlnThrTyrCysLysAsnAlaAsnValArgGluArgValIleLeuGlnTrp : 120 !|||:!!!.!!:!|||!:! !!|||!.! :::|||:::|||:::|||||| ! spMetGluAsnPheCysArgTyrAlaThrSerLysGluLysValValLeuGlnArg 1058127 : ACATGGAGAATTTCTGCAGATACGCCACCtcgaaggaaaaagttgtcCTGCAACGA : 1058074 121 : TyrValAspGlnPheSerThrPheTyrGlyValSerAlaThrTrpPheTyrLeuTh : 139 |||||||||::!!:!!.! !|||:!!|||:!!! ! ! !|||! !!:!||||| TyrValAspArgTyrLysTyrPheHisGlyIleTyrIleLeuTrpCysPheLeuTh 1058073 : TACGTGGACAGATACAAATACTTTCATGGGATTTATATATTATGGTGCTTCCTCAC : 1058017 140 : rAlaIleLeuValIleLeuGlyThrPhePheSerSerHisProPheProThrAsnA : 158 |.!!|||!!!|||||| !||| !!!!.!:!||| !!!!. !!|||||||||:!!| rThrIlePheValIleSerGlyProLeuTyrSerProGlnThrPheProThrHisA 1058016 : GACCATCTTCGTCATAAGTGGTCCATTGTACTCACCACAGACGTTCCCCACTCATG : 1057960 159 : laValTyrProIleAlaValAspTyrGlnProLeuMetSerIleValPheLeuHis : 176 ||:!!||||||.!! !|||!!::!! !! !!!!! :::::::::...||| laIleTyrProPheGlnValGluHisThrLeuPheLysIleValIleTyrPheHis 1057959 : CGATATATCCTTTCCAAGTGGAACATACACTGTTCAagattgttatttatttccat : 1057906 177 : GlnSerValIleGlyLeuGlnPheSerAlaThrValCysValSerValLeuCysAl : 195 ||||||:!!:!!|||!!!||| |||||| !:!!..!:!!..!..!! ! !|| GlnSerLeuValGlyPheGlnAlaSerAlaGlyMetAlaIleAspThrGlnIleAl 1057905 : CAGTCGTTAGTTGGTTTTCAGGCGTCCGCTGGTATGGCCATCGACACTCAAATTGC : 1057849 196 : aLeuLeuLeuLeuPheAlaSerAlaArgPheGluIleLeuLysMetGluLeuArgG : 214 ||||||||||! !!:!|||:!!||||||||||||:!!||| !! |||:!!|||. aLeuLeuLeuArgTyrAlaAlaAlaArgPheGluLeuLeuGlyAsnGluMetArgA 1057848 : TCTTCTTCTGCGATACGCGGCTGCCAGGTTCGAGCTATTGGGAAACGAGATGCGAA : 1057792 215 : luValLysLysProSerGluLeuIleLysCysMetGluLysTyrTyrThrValArg : 232 !.!.!!!.! ! !!!!|||!!!! ! |||!!:||||||:!! ! !:!!! ! snAlaAsnThrHisCysGluPheAsnAlaCysIleGluLysHisSerGluLeuLeu 1057791 : ATGCAAATACTCACTGTGAATTCAATGCCTGCATAGAGAAGCACAGTGAACTTCTC : 1057738 233 : Arg : 233 ||| Arg 1057737 : AGg : 1057733 vulgar: gi|805759608|ref|XP_012152319.1| 0 233 . KQ414618.1 1058517 1057732 - 369 M 63 189 G 0 3 M 34 102 5 0 2 I 0 79 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057733 1058517 369 - . gene_id 3 ; sequence gi|805759608|ref|XP_012152319.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1058224 1058517 . - . KQ414618.1 exonerate:protein2genome:local exon 1058224 1058517 . - . insertions 3 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1058222 1058223 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1058141 1058223 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1058141 1058142 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1057733 1058140 . - . KQ414618.1 exonerate:protein2genome:local exon 1057733 1058140 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057733 1058517 369 - . alignment_id 3 ; Query gi|805759608|ref|XP_012152319.1| ; Align 1058518 1 189 ; Align 1058326 64 102 ; Align 1058141 98 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759608|ref|XP_012152319.1| PREDICTED: uncharacterized protein LOC100884055 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 369 Query range: 93 -> 233 Target range: 1038352 -> 1037932 94 : AspArgPheGlnGlyValValGluGlyMetGlnThrTyrCysLysAsnAlaAsnVa : 112 |||! !!!.||| !:!!:!!|||! !|||:!!! !! !|||:!!!..|||!!. AspThrLeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysPr 1038352 : GACACGTTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACC : 1038298 113 : lArgGluArgValIleLeuGlnTrpTyrValAspGlnPheSerThrPheTyrGlyV : 131 ! !||||||! !:!!!!!||| ! ||||||:!!:!! ||| |||||| . oTyrGluArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleT 1038297 : ATACGAAAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataa : 1038241 132 : alSerAlaThrTrpPheTyrLeuThrAlaIleLeuValIleLeuGlyThrPhePhe : 149 .. !!:!!:!!|||||||||||||||||||||:!!:!!:!!||||||!:!.!..!! hrCysSerSerTrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeu 1038240 : catGTTCGTCATGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTT : 1038187 150 : SerSerHisProPheProThrAsnAlaValTyrProIleAlaValAspTyrGlnPr : 168 ! !||| !!|||||||||||||||||||||||||||.!! !!|||:!!!:!:!!|| IleSerAspProPheProThrAsnAlaValTyrProPheProValAsnPheGluPr 1038186 : ATATCCGATCCTTTTCCAACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACC : 1038130 169 : oLeuMetSerIleValPheLeuHisGlnSerValIleGlyLeuGlnPheSerAlaT : 187 ||||! ||||||:!!|||:!!||||||||| !!:!!|||:!!|||! !:!!||| oLeuArgSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaH 1038129 : CTTGAGAAGCATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCAC : 1038073 188 : hrValCysValSerValLeuCysAlaLeuLeuLeuLeuPheAlaSerAlaArgPhe : 205 !!.! !!:!!!:!||||||! !||||||||||||||||||.!!!!!||||||||| isAlaSerMetAsnValLeuSerAlaLeuLeuLeuLeuPheThrThrAlaArgPhe 1038072 : ACGCTAGTATGAATGTGCTTTCTGCACTGTTATTGCTATTCACTACAGCtcgtttc : 1038019 206 : GluIleLeuLysMetGluLeuArgGluValLysLysProSerGluLeuIleLysCy : 224 ||||||||| !! !|||||||||.!.|||!!. ! !..! !||||||||| ! GluIleLeuMetThrGluLeuArgAsnValAsnAspIleGluThrLeuIleLysSe 1038018 : gaaatattgaTGACGGAGTTGAGGAATGTCAATGATATCGAAACACTGATTAAGAG : 1037962 225 : sMetGluLysTyrTyrThrValArgArg : 233 !|||:!!||||||! |||||||||||| rMetLysLysTyrSerThrValArgArg 1037961 : TATGAAAAAGTATTCGACTGTGCGGAGG : 1037933 vulgar: gi|805759608|ref|XP_012152319.1| 93 233 . KQ414618.1 1038352 1037932 - 369 M 140 420 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037933 1038352 369 - . gene_id 4 ; sequence gi|805759608|ref|XP_012152319.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1037933 1038352 . - . KQ414618.1 exonerate:protein2genome:local exon 1037933 1038352 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037933 1038352 369 - . alignment_id 4 ; Query gi|805759608|ref|XP_012152319.1| ; Align 1038353 94 420 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759608|ref|XP_012152319.1| PREDICTED: uncharacterized protein LOC100884055 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 256 Query range: 267 -> 353 Target range: 1028385 -> 1028045 268 : GlnProPheThrSerArgCysGlnTyrLeuSerIleValTrpThrAlaLeuValAs : 286 |||||||||.!! !!:!..!|||!:!|||!!!:!: ! ! |||||||||:!!!! GlnProPheAlaValLysAlaGlnPheLeuThrValSerGlyThrAlaLeuLeuGl 1028385 : CAACCGTTCGCTGTGAAAGCTCAGTTTCTTACTGTGAGTGGAACCGCTTTGCTGGA : 1028331 287 : pValPheValCysAlaTrpProAlaAspHisLeuLeuSerIle >>>> Target : 301 :|||.!!:!!|||:!! |||||||||||||||:!!..!!!: 8 uValLeuMetCysSerLeuProAlaAspHisLeuIleAspMet++ 1028330 : AGTGCTTATGTGTTCACTACCAGCTGACCATTTGATAGATATGgt........... : 1028284 302 : Intron 1 >>>> SerGlnAsnValMetGluGlyIleTyrGluSerThrTrpP : 314 2 bp |||:!!|||:!!|||:!!|||||||||||||||! !|||! ++SerGluAsnIleMetGlnGlyIleTyrGluSerLysTrpT 1028283 : ..............agAGCGAGAACATAATGCAAGGAATATATGAATCAAAATGGT : 1028165 315 : heAspArgGlySerSerMetGlnArgAspValArgIleMetLeuLeuProGlnPro : 332 :!!!:|||... ...:::|||:::..!..! !:!!|||||| !|||||| !! yrGluArgSerLeuLysIleGlnLysSerThrValLeuMetLeuThrProGlnSer 1028164 : ACGAACGAtctctaaaaattcaaaagtcTACAGTCCTCATGTTGACTCCTCAATCT : 1028111 333 : ProValAlaIleLysValAspCysIleIleProAlaLeuSerLeuAsnTyrPheCy : 351 ||||||.!!:!!|||:!! ! |||:!!||||||!..||||||||||||::::::|| ProValThrValLysIleLysCysLeuIleProValLeuSerLeuAsnPheTyrCy 1028110 : CCGGTGACAGTAAAAATCAAGTGCCTCATTCCAGttctttctttgaatttttactg : 1028054 352 : sSerVal : 353 ||||||| sSerVal 1028053 : CTCGGTA : 1028046 vulgar: gi|805759608|ref|XP_012152319.1| 267 353 . KQ414618.1 1028385 1028045 - 256 M 33 99 5 0 2 I 0 78 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028046 1028385 256 - . gene_id 5 ; sequence gi|805759608|ref|XP_012152319.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1028287 1028385 . - . KQ414618.1 exonerate:protein2genome:local exon 1028287 1028385 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1028285 1028286 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1028205 1028286 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1028205 1028206 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028046 1028204 . - . KQ414618.1 exonerate:protein2genome:local exon 1028046 1028204 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028046 1028385 256 - . alignment_id 5 ; Query gi|805759608|ref|XP_012152319.1| ; Align 1028386 268 99 ; Align 1028205 301 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759608|ref|XP_012152319.1| PREDICTED: uncharacterized protein LOC100884055 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 253 Query range: 267 -> 353 Target range: 1036024 -> 1035607 268 : GlnProPheThrSerArgCysGlnTyrLeuSerIleValTrpThrAlaLeuValAs : 286 ||||||!!..!! !!:! !|||!:!|||!!!!!: ! ! |||||||||:!!!! GlnProLeuAlaValLysValGlnPheLeuThrMetSerGlyThrAlaLeuLeuGl 1036024 : CAACCGTTGGCTGTTAAAGTTCAATTTCTTACTATGAGTGGAACCGCGTTGCTGGA : 1035970 287 : pValPheValCysAlaTrpProAlaAspHisLeuLeuSerIle >>>> Target : 301 :||||||:!!|||:!! |||||||||||||||:!!..!!!: 1 uValPheMetCysSerLeuProAlaAspHisLeuIleAspMet++ 1035969 : AGTGTTTATGTGTTCACTACCAGCTGACCATTTGATAGATATGgt........... : 1035923 302 : Intron 1 >>>> SerGlnAsnValMetGluGlyIleTyrGluSerThrTrpP : 314 59 bp |||:!!|||:!!|||:!!|||||||||||||||! !|||! ++SerGluAsnIleMetGlnGlyIleTyrGluSerLysTrpT 1035922 : ..............agAGCGAGAACATAATGCAAGGAATATATGAATCGAAATGGT : 1035727 315 : heAspArgGlySerSerMetGlnArgAspValArgIleMetLeuLeuProGlnPro : 332 :!!!:|||... ...:::|||:::..!..! !:!!|||||| !|||||| !! yrGluArgSerLeuLysIleGlnLysSerThrValLeuMetLeuThrProGlnSer 1035726 : ACGAACGAtctctaaaaattcaaaagtcTACAGTCCTCATGTTGACTCCTCAATCT : 1035673 333 : ProValAlaIleLysValAspCysIleIleProAlaLeuSerLeuAsnTyrPheCy : 351 ||||||.!!:!!|||:!! ! |||:!!||||||!..||||||||||||::::::|| ProValThrValLysIleLysCysLeuIleProValLeuSerLeuAsnPheTyrCy 1035672 : CCGGTGACAGTAAAAATCAAGTGCCTCATTCCAGttctttctttgaatttttactg : 1035616 352 : sSerVal : 353 ||||||| sSerVal 1035615 : CTCGGTA : 1035608 vulgar: gi|805759608|ref|XP_012152319.1| 267 353 . KQ414618.1 1036024 1035607 - 253 M 33 99 5 0 2 I 0 155 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1035608 1036024 253 - . gene_id 6 ; sequence gi|805759608|ref|XP_012152319.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1035926 1036024 . - . KQ414618.1 exonerate:protein2genome:local exon 1035926 1036024 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1035924 1035925 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1035767 1035925 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1035767 1035768 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1035608 1035766 . - . KQ414618.1 exonerate:protein2genome:local exon 1035608 1035766 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1035608 1036024 253 - . alignment_id 6 ; Query gi|805759608|ref|XP_012152319.1| ; Align 1036025 268 99 ; Align 1035767 301 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759605|ref|XP_012152307.1| PREDICTED: uncharacterized protein LOC105664056 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 626 Query range: 0 -> 231 Target range: 1030017 -> 1028765 1 : MetPheArgAsnIleSerProGluArgAlaIleGluPheThrArgTyrSerValAl : 19 |||!!.!:! !! ||||||||||||||||||....!!..!!:! !! !..!|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1030017 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1029963 20 : aLeuThrCysCysTrpPro<-><-><->AlaGlnAlaArgSerArgValThrArgP : 35 |!!!||||||||||||||| .!! !.!!!:!|||! !||| !!:!| aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1029962 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1029906 36 : heLysIleCysArgCysLeuValLeuLeuAsnAlaPheLeuLeuPheLeuProLeu : 53 |||||||| |||! !!!!:!!||||||||||||!!.:!!||||||||||||||| heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1029905 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1029852 54 : ValTyrSerLeuTyrThrAsnHisAsnAspTyrValAsnPheSerLysSerIleCy : 72 :!!|||:!!|||:!!..!:!!!..|||||| !! !||| !!:!!|||:!! !|| LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1029851 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1029795 73 : sLeuPheIleAlaValValGlnIleLeuTrpAsnSerSerIleCysIleValHisG : 91 |||| :!!|||:::|||||||||...:::...::!! !:!!||||||! !!!. sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1029794 : CCTGACGCTTGCCctcgtgcaaatatttttccagacTTTCGTTTGCATCGGCCAAT : 1029738 92 : lnAsnAsnPheLeu >>>> Target Intron 1 >>>> GluLeuIleAlaG : 100 ! :!!:!!|||! ! 550 bp :!!||||||! !| yrAspHisPheGln++ ++LysLeuIleGluG 1029737 : ACGATCATTTTCAGgt.........................agAAACTAATCGAAG : 1029161 101 : luMetLysGluCysCysLysLysAlaLysProTyrGluArgSerThrTyrGlnArg : 118 |||||||| ||||||:!!! !||||||||||||||||||..!..!!:!|||||| luMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheGlnArg 1029160 : AAATGAAGATTTGCTGTGAAACAGCGAAACCATACGAAAGAGACGTCTTTCAACGA : 1029107 119 : TyrValAspLysTyrSerMetPheTyrGlyValSerThrIleTrpPheTyrValTh : 137 ||||||||||||||||||:!:||||||! !..!!!!:!! |||||||||:!!|| TyrValAspLysTyrSerLeuPheTyrValThrCysSerSerTrpPheTyrLeuTh 1029106 : TACGTCGATAAATACTCTTTATTTTACGTAACATGTTCGTCGTGGTTTTACTTAAC : 1029050 138 : rAlaLeuIleIleSerThrGlyThrLeuPheIleProGlnProPheProThrAsnA : 156 ||||:!!|||!!: ! !|||!:!! !.!!||| !!.!.|||||||||||||||| rAlaValIleMetValLeuGlySerArgIleIleSerAspProPheProThrAsnA 1029049 : AGCAGTTATTATGGTTCTGGGAAGTCGGATTATATCTGATCCTTTTCCAACCAACG : 1028993 157 : laGluTyrProPheProValHisTyrGlnProLeuLysSerIleIlePheLeuHis : 174 ||! !|||||||||||||||:!!!:!:!!||||||!:!||||||||||||:!!||| laValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHis 1028992 : CCGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGTATCATTTTTATGCAC : 1028939 175 : GlnSerPheLeuLeuLeuGlnCysSerAlaHisValCysIleAsnThrLeuCysAl : 193 |||||||||:!! !:!!||||||:!!||||||..! !!!!:|||..!||| !|| GlnSerPheValGlyIleGlnCysAlaAlaHisThrSerMetAsnValLeuThrAl 1028938 : CAATCGTTCGTTGGCATACAGTGTGCTGCACACACTAGTATGAATGTGCTAACTGC : 1028882 194 : aLeuLeuMetLeuPheAlaAlaAlaArgPheGluIleLeuLysIleLysLeuArgL : 212 |||||||:!:||||||||||||||||||||||||||||||! !!!::!!||||||! aLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuMetMetGluLeuArgA 1028881 : ATTGTTATTACTATTTGCTGCAGCTCGTTTCGAGATACTGATGATGGAGCTGAGGA : 1028825 213 : ysValArgThrSerArgAspLeuIleAspCysValArgMetTyrTyrIleValArg : 230 !.|||!!! !! !..! |||||| ! |||:!!!:!! !|||! ||||||||| snValSerAspIleGluThrLeuIleLysCysMetLysLysTyrSerIleValArg 1028824 : ATGTCAGTGACATTGAAACACTGATTAAATGTATGAAAAAGTATTCGATCGTACGG : 1028771 231 : Arg : 231 ||| Arg 1028770 : AGG : 1028766 vulgar: gi|805759605|ref|XP_012152307.1| 0 231 . KQ414618.1 1030017 1028765 - 626 M 25 75 G 0 9 M 70 210 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028766 1030017 626 - . gene_id 1 ; sequence gi|805759605|ref|XP_012152307.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1029724 1030017 . - . KQ414618.1 exonerate:protein2genome:local exon 1029724 1030017 . - . insertions 9 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1029722 1029723 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1029174 1029723 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1029174 1029175 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028766 1029173 . - . KQ414618.1 exonerate:protein2genome:local exon 1028766 1029173 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028766 1030017 626 - . alignment_id 1 ; Query gi|805759605|ref|XP_012152307.1| ; Align 1030018 1 75 ; Align 1029934 26 210 ; Align 1029174 96 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759605|ref|XP_012152307.1| PREDICTED: uncharacterized protein LOC105664056 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 598 Query range: 0 -> 231 Target range: 1039184 -> 1037932 1 : MetPheArgAsnIleSerProGluArgAlaIleGluPheThrArgTyrSerValAl : 19 |||!!.!:! !! ||||||||||||||||||....!!..!!:! !! !..!|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1039184 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1039130 20 : aLeuThrCysCysTrpPro<-><-><->AlaGlnAlaArgSerArgValThrArgP : 35 |!!!||||||||||||||| .!! !.!!!:!|||! !||| !!:!| aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1039129 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1039073 36 : heLysIleCysArgCysLeuValLeuLeuAsnAlaPheLeuLeuPheLeuProLeu : 53 |||||||| |||! !!!!:!!||||||||||||!!.:!!||||||||||||||| heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1039072 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1039019 54 : ValTyrSerLeuTyrThrAsnHisAsnAspTyrValAsnPheSerLysSerIleCy : 72 :!!|||:!!|||:!!..!:!!!..|||||| !! !||| !!:!!|||:!! !|| LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1039018 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1038962 73 : sLeuPheIleAlaValValGlnIleLeuTrpAsnSerSerIleCysIleValHisG : 91 |||| :!!|||:::|||||||||...:::...::: :::||||||! !!!. sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1038961 : CCTGACGCTTGCTctcgtgcaaatatttttccaaactttcgttTGCATCGGTCAAT : 1038905 92 : lnAsnAsnPheLeu >>>> Target Intron 1 >>>> GluLeuIleAlaG : 100 ! :!!:!!|||! ! 550 bp :!!||||||! !| yrAspHisPheGln++ ++LysLeuIleGluG 1038904 : ACGATCATTTTCAGgt.........................agAAACTAATCGAAG : 1038328 101 : luMetLysGluCysCysLysLysAlaLysProTyrGluArgSerThrTyrGlnArg : 118 |||||||| ||||||:!!! !||||||||||||||||||..!..!!:!|||||| luMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheGlnArg 1038327 : AAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGACGTCTTCCAACGA : 1038274 119 : TyrValAspLysTyrSerMetPheTyrGlyValSerThrIleTrpPheTyrValTh : 137 ||||||:!!|||:!:|||:::|||||| ... !!:!! !|||||||||:!!|| TyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheTyrLeuTh 1038273 : TACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTTACTTAAC : 1038217 138 : rAlaLeuIleIleSerThrGlyThrLeuPheIleProGlnProPheProThrAsnA : 156 ||||:!!|||!!: ! !|||!:!|||.!!||| !!.!.|||||||||||||||| rAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPheProThrAsnA 1038216 : AGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACCAACG : 1038160 157 : laGluTyrProPheProValHisTyrGlnProLeuLysSerIleIlePheLeuHis : 174 ||! !|||||||||||||||:!!!:!:!!||||||!:!||||||||||||:!!||| laValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHis 1038159 : CAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCAC : 1038106 175 : GlnSerPheLeuLeuLeuGlnCysSerAlaHisValCysIleAsnThrLeuCysAl : 193 |||||||||:!! !:!!||||||:!!||||||!.! !!!!:|||..!|||! !|| GlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAl 1038105 : CAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGC : 1038049 194 : aLeuLeuMetLeuPheAlaAlaAlaArgPheGluIleLeuLysIleLysLeuArgL : 212 |||||||:!!||||||.!!.!!|||||||||||||||||| !! :!!||||||! aLeuLeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgA 1038048 : ACTGTTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGA : 1037992 213 : ysValArgThrSerArgAspLeuIleAspCysValArgMetTyrTyrIleValArg : 230 !.|||!.! !! !..! |||||| ! !!:!!!:!! !|||! ! !|||||| snValAsnAspIleGluThrLeuIleLysSerMetLysLysTyrSerThrValArg 1037991 : ATGTCAATGATATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGG : 1037938 231 : Arg : 231 ||| Arg 1037937 : AGG : 1037933 vulgar: gi|805759605|ref|XP_012152307.1| 0 231 . KQ414618.1 1039184 1037932 - 598 M 25 75 G 0 9 M 70 210 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037933 1039184 598 - . gene_id 2 ; sequence gi|805759605|ref|XP_012152307.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1038891 1039184 . - . KQ414618.1 exonerate:protein2genome:local exon 1038891 1039184 . - . insertions 9 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1038889 1038890 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1038341 1038890 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1038341 1038342 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1037933 1038340 . - . KQ414618.1 exonerate:protein2genome:local exon 1037933 1038340 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037933 1039184 598 - . alignment_id 2 ; Query gi|805759605|ref|XP_012152307.1| ; Align 1039185 1 75 ; Align 1039101 26 210 ; Align 1038341 96 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759605|ref|XP_012152307.1| PREDICTED: uncharacterized protein LOC105664056 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 433 Query range: 0 -> 231 Target range: 1053857 -> 1052542 1 : MetPheArgAsnIleSerProGluArgAlaIleGluPheThrArgTyrSerValAl : 19 |||!!.!:!.!.:!:!!!||||||!:!!.!|||!!:.!!! ! !!!:!|||||||| MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : aLeuThrCysCysTrpPro<-><-><->AlaGlnAlaArgSerArgValThrArgP : 35 ||||.!! !||||||||| :!! ::!!:!:!!!:!|||... | aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 36 : heLysIleCysArgCysLeuValLeuLeuAsnAlaPheLeuLeuPheLeuProLeu : 53 |||||||| ::: ! !:!!!:!|||.!!:!!|||.!!||||||||| heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 54 : ValTyrSerLeuTyrThrAsnHisAsnAspTyrValAsnPheSerLysSerIleCy : 72 :!!|||||| !||| !:!! !:!!||| !:!! !.!!|||:!!|||||||| LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 73 : sLeuPheIleAlaValValGlnIleLeuTrpAsnSerSerIleCysIleValHisG : 91 ||||! !!:!.!||| !!|||!!::!! !.!.!!! !||||||.!!..!:!! sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCysPheThrAsnT 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGTTTCACCAACT : 1053578 92 : lnAsnAsnPheLeu >>>> Target Intron 1 >>>> GluLeuIleAlaG : 100 ! :!! !.!.! ! 613 bp ..!:!!|||.!!| yrAspLeuLeuGln++ ++ArgIleIleThrG 1053577 : ACGACCTTCTGCAGgt.........................agCGAATAATTACAG : 1052938 101 : luMetLysGluCysCysLysLysAlaLysProTyrGluArgSerThrTyrGlnArg : 118 |||||! !! ! !|||:!!|||:!!! !!:!||||||..!! ! !!!.!.! luMetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLeuHisAsn 1052937 : AAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCACAAC : 1052884 119 : TyrValAspLysTyrSerMetPheTyrGlyValSerThrIleTrpPheTyrValTh : 137 |||:!!.!.|||! !!.!:!:|||||||||! !||| !|||||| |||:!! TyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrTyrLeuCy 1052883 : TATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACATACCTCTG : 1052827 138 : rAlaLeuIleIleSerThrGlyThrLeuPheIleProGlnProPheProThrAsnA : 156 !||| ! !.!! ! !||| !!:!! !!:!!|||.!.|||||||||!:!!:!| sAlaThrCysPheValLeuGlyProValValLeuProAsnProPheProSerSerA 1052826 : TGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGCAGTG : 1052770 157 : laGluTyrProPheProValHisTyrGlnProLeuLysSerIleIlePheLeuHis : 174 ||||||||||||||! !|||:!! ! !|||:!!!!.:!!|||:!!!:!|||||| laGluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyrLeuHis 1052769 : CAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTACCTGCAC : 1052716 175 : GlnSerPheLeuLeuLeuGlnCysSerAlaHisValCysIleAsnThrLeuCysAl : 193 |||||||||:!! !!!!|||! !|||||||||:!!|||:!!!:!! !!!! ! || GlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePheGlyAl 1052715 : CAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTTCGGAGC : 1052659 194 : aLeuLeuMetLeuPheAlaAlaAlaArgPheGluIleLeuLysIleLysLeuArgL : 212 |||||||:!:! !.!!.!!||||||||||||.!. !|||! :!::!!:!!!:!: aLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluValGlnG 1052658 : TCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTTCAAC : 1052602 213 : ysValArgThrSerArgAspLeuIleAspCysValArgMetTyrTyrIleValArg : 230 !! ! !!:!! !!.! |||||| !||||||!:!! ! :!!:!!||| lnSerSerSerIleHisMetLeuIleIleCysValLysLysGlnLeuLeuLeuArg 1052601 : AAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCTACTACTGAGG : 1052548 231 : Arg : 231 ||| Arg 1052547 : AGG : 1052543 vulgar: gi|805759605|ref|XP_012152307.1| 0 231 . KQ414618.1 1053857 1052542 - 433 M 25 75 G 0 9 M 70 210 5 0 2 I 0 609 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1052543 1053857 433 - . gene_id 3 ; sequence gi|805759605|ref|XP_012152307.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1053564 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053564 1053857 . - . insertions 9 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1053562 1053563 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052951 1053563 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052951 1052952 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052543 1052950 . - . KQ414618.1 exonerate:protein2genome:local exon 1052543 1052950 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1052543 1053857 433 - . alignment_id 3 ; Query gi|805759605|ref|XP_012152307.1| ; Align 1053858 1 75 ; Align 1053774 26 210 ; Align 1052951 96 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759605|ref|XP_012152307.1| PREDICTED: uncharacterized protein LOC105664056 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 374 Query range: 0 -> 226 Target range: 1058517 -> 1057747 1 : MetPheArgAsnIleSerProGluArgAlaIleGluPheThrArgTyrSerValAl : 19 ||| !:!!:!|||!!!||||||!:!||||||..!||||||!:! |||||||| MetArgLysSerIleThrProGluGlnAlaIleSerPheThrLysLeuSerValAl 1058517 : ATGAGGAAAAGTATAACGCCGGAACAAGCGATCTCGTTCACGAAACTGAGCGTCGC : 1058463 20 : aLeuThrCysCysTrpProAlaGln<-><-><->AlaArgSerArgValThrArgP : 35 |:!!||||||! |||||| !!..! .!!|||!!!!:!||| !! !| aValThrCysSerTrpProProSerProLeuAlaThrArgThrGlnValLeuLeuP 1058462 : TGTAACTTGTTCGTGGCCACCGTCACCTCTGGCGACCAGAACTCAAGTTTTGCTCT : 1058406 36 : heLysIleCysArgCysLeuValLeuLeuAsnAlaPheLeuLeuPheLeuProLeu : 53 ||!!.! ! !! !! !!.!!!!:!!!:!.!!.!! !|||.!!||||||||| heAsnThrLeuTrpSerThrAlaPheValSerThrIleAlaLeuLeuLeuProLeu 1058405 : TTAATACGTTGTGGAGCACAGCATTCGTTAGCACCATCGCGCTGCTTTTGCCGCTA : 1058352 54 : ValTyrSerLeuTyrThrAsnHisAsnAspTyrValAsnPheSerLysSerIleCy : 72 :!! !.!!:!!||| ! !!!.!!!.||| !:!!! !.!!.!!|||!!!:!! ! LeuSerGlyIleTyrGluTyrArgLysAspProIleIleLeuGlyLysThrValSe 1058351 : TTGAGCGGAATTTACGAGTACCGTAAAGACCCCATCATTCTTGGGAAAACAGTCAG : 1058295 73 : sLeuPheIleAlaValValGlnIleLeuTrpAsnSerSerIleCysIleValHisG : 91 !||| ! ||||||!.!|||:!: ! !!.! !! !!!:||| ! !!!!.| rLeuAlaSerAlaValAlaGlnValAlaIleLysMetIleMetCysArgPheGlnG 1058294 : CCTCGCCTCGGCTGTCGCCCAGGTGGCAATCAAAATGATAATGTGCCGTTTCCAGC : 1058238 92 : lnAsnAsnPheLeu >>>> Target Intron 1 >>>> GluLeuIleAlaG : 100 ||!!..!.|||! ! 83 bp ! !||| ! !! lnLysGlnPheGln++ ++ValLeuTyrPheA 1058237 : AGAAGCAATTCCAGgt.........................agGTATTGTACTTCG : 1058128 101 : luMetLysGluCysCysLysLysAlaLysProTyrGluArgSerThrTyrGlnArg : 118 !:|||:!!.!.! !|||!:! ! |||! |||::: ... |||||| spMetGluAsnPheCysArgTyrAlaThrSerLysGluLysValValLeuGlnArg 1058127 : ACATGGAGAATTTCTGCAGATACGCCACCtcgaaggaaaaagttgtcCTGCAACGA : 1058074 119 : TyrValAspLysTyrSerMetPheTyrGlyValSerThrIleTrpPheTyrValTh : 137 |||||||||!:!|||!.! |||:!!|||:!!! !! !:!!|||! !!:!:!!|| TyrValAspArgTyrLysTyrPheHisGlyIleTyrIleLeuTrpCysPheLeuTh 1058073 : TACGTGGACAGATACAAATACTTTCATGGGATTTATATATTATGGTGCTTCCTCAC : 1058017 138 : rAlaLeuIleIleSerThrGlyThrLeuPheIleProGlnProPheProThrAsnA : 156 |.!!:!!.!!:!!! !!:!||| !!|||!:! !|||||| !!|||||||||:!!| rThrIlePheValIleSerGlyProLeuTyrSerProGlnThrPheProThrHisA 1058016 : GACCATCTTCGTCATAAGTGGTCCATTGTACTCACCACAGACGTTCCCCACTCATG : 1057960 157 : laGluTyrProPheProValHisTyrGlnProLeuLysSerIleIlePheLeuHis : 174 || !|||||||||! !|||.!.:!! !! !!!!||| :::|||:::...||| laIleTyrProPheGlnValGluHisThrLeuPheLysIleValIleTyrPheHis 1057959 : CGATATATCCTTTCCAAGTGGAACATACACTGTTCAagattgttatttatttccat : 1057906 175 : GlnSerPheLeuLeuLeuGlnCysSerAlaHisValCysIleAsnThrLeuCysAl : 193 ||||||!!.:!! !!!!|||...|||||| !:!!..!|||:!!|||! ! !|| GlnSerLeuValGlyPheGlnAlaSerAlaGlyMetAlaIleAspThrGlnIleAl 1057905 : CAGTCGTTAGTTGGTTTTCAGGCGTCCGCTGGTATGGCCATCGACACTCAAATTGC : 1057849 194 : aLeuLeuMetLeuPheAlaAlaAlaArgPheGluIleLeuLysIleLysLeuArgL : 212 |||||||:!!! !!:!||||||||||||||||||:!!||| !! !:!!:!!|||! aLeuLeuLeuArgTyrAlaAlaAlaArgPheGluLeuLeuGlyAsnGluMetArgA 1057848 : TCTTCTTCTGCGATACGCGGCTGCCAGGTTCGAGCTATTGGGAAACGAGATGCGAA : 1057792 213 : ysValArgThrSerArgAspLeuIleAspCysValArgMetTyr : 226 !.!.!!.!||| ! !!!!:!!!! !! !|||:!!..!! !:!! snAlaAsnThrHisCysGluPheAsnAlaCysIleGluLysHis 1057791 : ATGCAAATACTCACTGTGAATTCAATGCCTGCATAGAGAAGCAC : 1057748 vulgar: gi|805759605|ref|XP_012152307.1| 0 226 . KQ414618.1 1058517 1057747 - 374 M 27 81 G 0 9 M 68 204 5 0 2 I 0 79 3 0 2 M 131 393 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057748 1058517 374 - . gene_id 4 ; sequence gi|805759605|ref|XP_012152307.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1058224 1058517 . - . KQ414618.1 exonerate:protein2genome:local exon 1058224 1058517 . - . insertions 9 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1058222 1058223 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1058141 1058223 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1058141 1058142 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1057748 1058140 . - . KQ414618.1 exonerate:protein2genome:local exon 1057748 1058140 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057748 1058517 374 - . alignment_id 4 ; Query gi|805759605|ref|XP_012152307.1| ; Align 1058518 1 81 ; Align 1058428 28 204 ; Align 1058141 96 393 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759605|ref|XP_012152307.1| PREDICTED: uncharacterized protein LOC105664056 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 294 Query range: 264 -> 363 Target range: 1036027 -> 1035495 265 : LysGlnProPheThrValGlnValGlnPheLeuSerLeuAlaGlyThrGlyLeuIl : 283 |||||||||!!..!!|||:!!||||||||||||!!!:!!::!||||||!.!|||:! LysGlnProLeuAlaValLysValGlnPheLeuThrMetSerGlyThrAlaLeuLe 1036027 : AAACAACCGTTGGCTGTTAAAGTTCAATTTCTTACTATGAGTGGAACCGCGTTGCT : 1035973 284 : eGluValPheMetPheAlaTrpProAlaAspHisLeuLeuHisLeu >>>> Tar : 299 :||||||||||||! !:!! |||||||||||||||:!! !!:!! uGluValPheMetCysSerLeuProAlaAspHisLeuIleAspMet++ 1035972 : GGAAGTGTTTATGTGTTCACTACCAGCTGACCATTTGATAGATATGgt........ : 1035923 300 : get Intron 1 >>>> SerGlnAsnThrMetGlnValIleTyrGluSerLeuT : 311 159 bp |||:!!|||! !||||||! !|||||||||||| !| ++SerGluAsnIleMetGlnGlyIleTyrGluSerLysT 1035922 : .................agAGCGAGAACATAATGCAAGGAATATATGAATCGAAAT : 1035730 312 : rpTyrLeuArgSerAlaSerMetGlnArgAspIleAlaIleMetMetLeuProGln : 329 ||||| !|||||| ...:::|||:::..!! !!.!:!!|||:!! !|||||| rpTyrGluArgSerLeuLysIleGlnLysSerThrValLeuMetLeuThrProGln 1035729 : GGTACGAACGAtctctaaaaattcaaaagtcTACAGTCCTCATGTTGACTCCTCAA : 1035676 330 : AlaProValAlaIleLysIleValTyrIleIleProIleMetSerLeuAsnTyrTy : 348 :!!||||||.!!:!!|||||| !! !:!!||||||::::::|||||||||:::|| SerProValThrValLysIleLysCysLeuIleProValLeuSerLeuAsnPheTy 1035675 : TCTCCGGTGACAGTAAAAATCAAGTGCCTCATTCCAGttctttctttgaattttta : 1035619 349 : rCysSer >>>> Target Intron 2 >>>> PheValSerAsnValLeuSe : 357 ||||||| 76 bp !:!||||||||||||!!!|| rCysSer++ ++TyrValSerAsnValPheSe 1035618 : ctgCTCGgt.........................agTACGTCTCAAATGTGTTCTC : 1035516 358 : rLeuPheThrValLeuArg : 363 ||||||||||!.!|||||| rLeuPheThrAlaLeuArg 1035515 : TTTATTTACCGCTTTAAGA : 1035496 vulgar: gi|805759605|ref|XP_012152307.1| 264 363 . KQ414618.1 1036027 1035495 - 294 M 34 102 5 0 2 I 0 155 3 0 2 M 52 156 5 0 2 I 0 72 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1035496 1036027 294 - . gene_id 5 ; sequence gi|805759605|ref|XP_012152307.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1035926 1036027 . - . KQ414618.1 exonerate:protein2genome:local exon 1035926 1036027 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1035924 1035925 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1035767 1035925 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1035767 1035768 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1035611 1035766 . - . KQ414618.1 exonerate:protein2genome:local exon 1035611 1035766 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1035609 1035610 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1035535 1035610 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1035535 1035536 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1035496 1035534 . - . KQ414618.1 exonerate:protein2genome:local exon 1035496 1035534 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1035496 1036027 294 - . alignment_id 5 ; Query gi|805759605|ref|XP_012152307.1| ; Align 1036028 265 102 ; Align 1035767 299 156 ; Align 1035535 351 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759605|ref|XP_012152307.1| PREDICTED: uncharacterized protein LOC105664056 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 161 Query range: 298 -> 350 Target range: 1028204 -> 1028048 299 : SerGlnAsnThrMetGlnValIleTyrGluSerLeuTrpTyrLeuArgSerAlaSe : 317 |||:!!|||! !||||||! !|||||||||||| !|||||| !|||||| .. SerGluAsnIleMetGlnGlyIleTyrGluSerLysTrpTyrGluArgSerLeuLy 1028204 : AGCGAGAACATAATGCAAGGAATATATGAATCAAAATGGTACGAACGAtctctaaa : 1028150 318 : rMetGlnArgAspIleAlaIleMetMetLeuProGlnAlaProValAlaIleLysI : 336 .:::|||:::..!! !!.!:!!|||:!! !||||||:!!||||||.!!:!!|||| sIleGlnLysSerThrValLeuMetLeuThrProGlnSerProValThrValLysI 1028149 : aattcaaaagtcTACAGTCCTCATGTTGACTCCTCAATCTCCGGTGACAGTAAAAA : 1028093 337 : leValTyrIleIleProIleMetSerLeuAsnTyrTyrCysSer : 350 || !! !:!!||||||::::::|||||||||:::||||||||| leLysCysLeuIleProValLeuSerLeuAsnPheTyrCysSer 1028092 : TCAAGTGCCTCATTCCAGttctttctttgaatttttactgCTCG : 1028049 vulgar: gi|805759605|ref|XP_012152307.1| 298 350 . KQ414618.1 1028204 1028048 - 161 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028049 1028204 161 - . gene_id 6 ; sequence gi|805759605|ref|XP_012152307.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028049 1028204 . - . KQ414618.1 exonerate:protein2genome:local exon 1028049 1028204 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028049 1028204 161 - . alignment_id 6 ; Query gi|805759605|ref|XP_012152307.1| ; Align 1028205 299 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759605|ref|XP_012152307.1| PREDICTED: uncharacterized protein LOC105664056 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 264 -> 309 Target range: 1028388 -> 1028253 265 : LysGlnProPheThrValGlnValGlnPheLeuSerLeuAlaGlyThrGlyLeuIl : 283 ||||||||||||.!!|||:!!!.!|||||||||!!!:!!::!||||||!.!|||:! LysGlnProPheAlaValLysAlaGlnPheLeuThrValSerGlyThrAlaLeuLe 1028388 : AAACAACCGTTCGCTGTGAAAGCTCAGTTTCTTACTGTGAGTGGAACCGCTTTGCT : 1028334 284 : eGluValPheMetPheAlaTrpProAlaAspHisLeuLeuHisLeuSerGlnAsnT : 302 :||||||.!!|||! !:!! |||||||||||||||:!! !!:!! !...:!! uGluValLeuMetCysSerLeuProAlaAspHisLeuIleAspMetValSerAspT 1028333 : GGAAGTGCTTATGTGTTCACTACCAGCTGACCATTTGATAGATATGGTAAGTGATT : 1028277 303 : hrMetGlnValIleTyrGluSer : 309 !:!!..!:!!.!!!:!:!!:!! yrLeuMetLeuPhePheLysAla 1028276 : ATTTGATGCTATTCTTTAAGGCT : 1028254 vulgar: gi|805759605|ref|XP_012152307.1| 264 309 . KQ414618.1 1028388 1028253 - 111 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028254 1028388 111 - . gene_id 7 ; sequence gi|805759605|ref|XP_012152307.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028254 1028388 . - . KQ414618.1 exonerate:protein2genome:local exon 1028254 1028388 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028254 1028388 111 - . alignment_id 7 ; Query gi|805759605|ref|XP_012152307.1| ; Align 1028389 265 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759618|ref|XP_012152350.1| PREDICTED: uncharacterized protein LOC105664057 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1335 Query range: 1 -> 370 Target range: 1058511 -> 1054220 2 : LysHisValThrProGluAlaAlaIleHisPheThrLysLeuSerValLeuLeuTh : 20 ||| !:!!||||||||| !|||||| |||||||||||||||||| !:!!|| LysSerIleThrProGluGlnAlaIleSerPheThrLysLeuSerValAlaValTh 1058511 : AAAAGTATAACGCCGGAACAAGCGATCTCGTTCACGAAACTGAGCGTCGCTGTAAC : 1058457 21 : rCysSerTrpProProSerProLeuIleThrLysThrArgLeuLeuPhePheAsnI : 39 ||||||||||||||||||||||||| |||!:!|||!:!:!!|||.!!||||||! rCysSerTrpProProSerProLeuAlaThrArgThrGlnValLeuLeuPheAsnT 1058456 : TTGTTCGTGGCCACCGTCACCTCTGGCGACCAGAACTCAAGTTTTGCTCTTTAATA : 1058400 40 : leLeuTrpCysThrSerLeuValSerAlaLeuGlyLeuPheValProLeuPheAsn : 57 |||||| !!|||:!!!!!||||||.!!:!!!.!|||.!!:!!||||||!!.!:! hrLeuTrpSerThrAlaPheValSerThrIleAlaLeuLeuLeuProLeuLeuSer 1058399 : CGTTGTGGAGCACAGCATTCGTTAGCACCATCGCGCTGCTTTTGCCGCTATTGAGC : 1058346 58 : AlaValTyrGluTyrArgLysAsnProIleIleLeuGlyLysThrValSerLeuCy : 76 !.!:!!|||||||||||||||:!!||||||||||||||||||||||||||||||.. GlyIleTyrGluTyrArgLysAspProIleIleLeuGlyLysThrValSerLeuAl 1058345 : GGAATTTACGAGTACCGTAAAGACCCCATCATTCTTGGGAAAACAGTCAGCCTCGC : 1058289 77 : sAlaAlaValAlaGlnValIleIleLysMetThrMetCysArgLeuGlnGlnLysG : 95 !:!!||||||||||||||| !|||||||||! !|||||||||!!!|||||||||| aSerAlaValAlaGlnValAlaIleLysMetIleMetCysArgPheGlnGlnLysG 1058288 : CTCGGCTGTCGCCCAGGTGGCAATCAAAATGATAATGTGCCGTTTCCAGCAGAAGC : 1058232 96 : lnPheGln >>>> Target Intron 1 >>>> ValLeuTyrPheAspMetG : 104 |||||||| 83 bp ||||||||||||||||||| lnPheGln++ ++ValLeuTyrPheAspMetG 1058231 : AATTCCAGgt.........................agGTATTGTACTTCGACATGG : 1058122 105 : luAspPheCysLysArgAlaThrSerSerGluArgIleValLeuGlnArgTyrVal : 122 ||:!!||||||!:! !|||||||||...|||::::::|||||||||||||||||| luAsnPheCysArgTyrAlaThrSerLysGluLysValValLeuGlnArgTyrVal 1058121 : AGAATTTCTGCAGATACGCCACCtcgaaggaaaaagttgtcCTGCAACGATACGTG : 1058068 123 : AspArgTyrLysTyrPheHisGlyValTyrThrLeuTrpCysPheLeuThrThrMe : 141 ||||||||||||||||||||||||:!!|||! !|||||||||||||||||||||!! AspArgTyrLysTyrPheHisGlyIleTyrIleLeuTrpCysPheLeuThrThrIl 1058067 : GACAGATACAAATACTTTCATGGGATTTATATATTATGGTGCTTCCTCACGACCAT : 1058011 142 : tPheValIleSerGlyProLeuTyrSerProGlnThrPheProThrHisAlaIleT : 160 :||||||||||||||||||||||||||||||||||||||||||||||||||||||| ePheValIleSerGlyProLeuTyrSerProGlnThrPheProThrHisAlaIleT 1058010 : CTTCGTCATAAGTGGTCCATTGTACTCACCACAGACGTTCCCCACTCATGCGATAT : 1057954 161 : yrProPheProValGluHisGlnProLeuLysCysLeuIlePhePheHisGlnSer : 178 ||||||||! !||||||||| !! !!!!||| :::|||:::|||||||||||| yrProPheGlnValGluHisThrLeuPheLysIleValIleTyrPheHisGlnSer 1057953 : ATCCTTTCCAAGTGGAACATACACTGTTCAagattgttatttatttccatCAGTCG : 1057900 179 : LeuValGlyPheGlnAlaSerSerGlyMetAlaIleAspAlaGlnValAlaLeuLe : 197 |||||||||||||||||||||:!!|||||||||||||||.!!|||:!!|||||||| LeuValGlyPheGlnAlaSerAlaGlyMetAlaIleAspThrGlnIleAlaLeuLe 1057899 : TTAGTTGGTTTTCAGGCGTCCGCTGGTATGGCCATCGACACTCAAATTGCTCTTCT : 1057843 198 : uLeuArgTyrThrAlaAlaArgPheGluLeuLeuAlaMetGlnLeuHisAlaAlaT : 216 ||||||||||.!!|||||||||||||||||||||!.!! :!!:!!!.. !|||! uLeuArgTyrAlaAlaAlaArgPheGluLeuLeuGlyAsnGluMetArgAsnAlaA 1057842 : TCTGCGATACGCGGCTGCCAGGTTCGAGCTATTGGGAAACGAGATGCGAAATGCAA : 1057786 217 : hrSerAspArgGluLeuAsnAlaCysIleLysValHisSerGluLeuLeu{Ar} : 233 .!!!! !! !!|||!!!||||||||||||:!! !|||||||||||||||{||} snThrHisCysGluPheAsnAlaCysIleGluLysHisSerGluLeuLeu{Ar}++ 1057785 : ATACTCACTGTGAATTCAATGCCTGCATAGAGAAGCACAGTGAACTTCTC{AG}gt : 1057733 234 : >>>> Target Intron 2 >>>> {g}TyrThrArgGlnValCysLysCysAl : 242 1480 bp {|}||||||!:! !:!! ! :!!! ! ++{g}TyrThrLysThrIleArgGlnSerIl 1057732 : .........................ag{G}TATACGAAAACAATTCGACAATCTAT : 1056228 243 : aArgPheLeuValLeuAlaThrValThrThrThrIleIleAlaValIlePheGlyS : 261 !!:!||||||:!!|||.!!|||:!!.!!||||||! !:!:|||||||||||||||| eLysPheLeuIleLeuThrThrIleAlaThrThrThrValAlaValIlePheGlyS 1056227 : CAAGTTCCTAATTTTGACCACTATTGCGACTACTACCGTGGCCGTAATTTTTGGTA : 1056171 262 : erLeuAsnLeuValThr >>>> Target Intron 3 >>>> LysGlnProL : 270 |||||||||||:!!.!! 76 bp !!.||||||| erLeuAsnLeuIleAla++ ++AsnGlnProL 1056170 : GCTTGAATTTAATCGCTgt.........................agAATCAACCAT : 1056068 271 : euLeuLeuLysGlyLeuTyrAlaValIleValPheSerAlaSerValGluLeuPhe : 288 |||||||||||!.!||||||||||||:!!||||||||||||||||||||||||||| euLeuLeuLysAlaLeuTyrAlaValValValPheSerAlaSerValGluLeuPhe 1056067 : TGCTTTTGAAAGCTTTATACGCGGTCGTAGTATTCAGCGCCAGCGTGGAGCTCTTC : 1056014 289 : MetTyrAlaTrpProAlaAspAsnLeuMetArgMet >>>> Target Intron : 301 |||||||||||||||||||||||||||||||||||| 63 bp MetTyrAlaTrpProAlaAspAsnLeuMetArgMet++ 1056013 : ATGTACGCTTGGCCTGCGGATAATTTGATGCGTATGgt.................. : 1055973 302 : 4 >>>> SerGluLysIleAlaThrAsnAlaTyrSerThrLysTrpPheGluLy : 316 ||| !|||:!!|||.!!:!! !|||!:!||| ! ||||||||||| ++SerThrLysLeuAlaAlaAspIleTyrAsnThrAspTrpPheGluLy 1055972 : .......agAGTACGAAGCTTGCGGCAGATATTTACAACACAGATTGGTTCGAAAA : 1055867 317 : sAsnIleAlaIleGlnArgLysIlePhePheMetMetLeuArgSerGlnLysLeuG : 335 |:!!||| !:!:|||!:!|||:!!!:!!:!!!:!!:! !|||||||||!:!|||| sAspIleArgLeuGlnLysLysValTyrTyrIleIleGlnArgSerGlnArgLeuG 1055866 : GGATATTAGATTGCAAAAAAAGGTATACTATATTATACAAAGGTCTCAGAGGCTCG : 1055810 336 : luPheIleTyrValArgGlyIleValProLysLeuSerLeuPheTyrTyrAlaGln : 353 || !||| :!!!.!|||||||||||||||||||||||| |||||||||..! luAlaIleArgIleAsnGlyIleValProLysLeuSerLeuProTyrTyrAlaMet 1055809 : AAGCTATTCGAATTAATGGCATAGTTCCAAAACTATCCCTGCCATACTATGCAATG : 1055756 354 : >>>> Target Intron 5 >>>> TyrLeuTyrLysSerThrSerTyrPhe : 362 1482 bp ||||||||||||||| !||||||||| ++ ++TyrLeuTyrLysSerLeuSerTyrPhe 1055755 : gt.........................agTATCTATACAAGTCTTTATCTTACTTC : 1054247 363 : AlaAlaLeuArgIleMetValGlu : 370 .!!||||||||||||||||||||| ThrAlaLeuArgIleMetValGlu 1054246 : ACTGCGTTGCGTATCATGGTCGAA : 1054221 vulgar: gi|805759618|ref|XP_012152350.1| 1 370 . KQ414618.1 1058511 1054220 - 1335 M 96 288 5 0 2 I 0 79 3 0 2 M 135 405 S 0 2 5 0 2 I 0 1476 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 34 102 5 0 2 I 0 59 3 0 2 M 53 159 5 0 2 I 0 1478 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1054221 1058511 1335 - . gene_id 1 ; sequence gi|805759618|ref|XP_012152350.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1058224 1058511 . - . KQ414618.1 exonerate:protein2genome:local exon 1058224 1058511 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1058222 1058223 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1058141 1058223 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1058141 1058142 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1057734 1058140 . - . KQ414618.1 exonerate:protein2genome:local exon 1057734 1058140 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1057732 1057733 . - . intron_id 2 ; splice_site "gt" KQ414618.1 exonerate:protein2genome:local intron 1056254 1057733 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1056254 1056255 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1056154 1056253 . - . KQ414618.1 exonerate:protein2genome:local exon 1056154 1056253 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1056152 1056153 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1056078 1056153 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1056078 1056079 . - . intron_id 2 ; splice_site "ag" KQ414618.1 exonerate:protein2genome:local cds 1055976 1056077 . - . KQ414618.1 exonerate:protein2genome:local exon 1055976 1056077 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1055974 1055975 . - . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1055913 1055975 . - . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 1055913 1055914 . - . intron_id 3 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1055754 1055912 . - . KQ414618.1 exonerate:protein2genome:local exon 1055754 1055912 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1055752 1055753 . - . intron_id 5 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1054272 1055753 . - . intron_id 5 KQ414618.1 exonerate:protein2genome:local splice3 1054272 1054273 . - . intron_id 4 ; splice_site "aG" KQ414618.1 exonerate:protein2genome:local cds 1054221 1054271 . - . KQ414618.1 exonerate:protein2genome:local exon 1054221 1054271 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1054221 1058511 1335 - . alignment_id 1 ; Query gi|805759618|ref|XP_012152350.1| ; Align 1058512 2 288 ; Align 1058141 98 405 ; Align 1056253 234 99 ; Align 1056078 267 102 ; Align 1055913 301 159 ; Align 1054272 354 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759618|ref|XP_012152350.1| PREDICTED: uncharacterized protein LOC105664057 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 271 Query range: 95 -> 233 Target range: 1029179 -> 1028765 96 : PheGlnValLeuTyrPheAspMetGluAspPheCysLysArgAlaThrSerSerGl : 114 !!.||| !||| ! !!:|||:!! !! !|||:!!! !|||! ! !!! !|| LeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGl 1029179 : TTGCAGAAACTAATCGAAGAAATGAAGATTTGCTGTGAAACAGCGAAACCATACGA : 1029125 115 : uArgIleValLeuGlnArgTyrValAspArgTyrLysTyrPheHisGlyValTyrT : 133 |||| !|||!!!|||||||||||||||!:!|||...! |||:!!! !..!! !: uArgAspValPheGlnArgTyrValAspLysTyrSerLeuPheTyrValThrCysS 1029124 : AAGAGACGTCTTTCAACGATACGTCGATAAATACTCTTTATTTTACGTAACATGTT : 1029068 134 : hrLeuTrpCysPheLeuThrThrMetPheValIleSerGlyProLeuTyrSerPro : 151 !!! !|||! !!:!||||||.!!:!:.!!:!!:!! !||| !! ! !! ! !! erSerTrpPheTyrLeuThrAlaValIleMetValLeuGlySerArgIleIleSer 1029067 : CGTCGTGGTTTTACTTAACAGCAGTTATTATGGTTCTGGGAAGTCGGATTATATCT : 1029014 152 : GlnThrPheProThrHisAlaIleTyrProPheProValGluHisGlnProLeuLy : 170 .!. !!|||||||||:!!|||:!!|||||||||||||||.!. !:!!||||||!: AspProPheProThrAsnAlaValTyrProPheProValAsnPheGluProLeuAr 1029013 : GATCCTTTTCCAACCAACGCCGTATATCCATTCCCTGTTAACTTTGAACCCTTGAG : 1028957 171 : sCysLeuIlePhePheHisGlnSerLeuValGlyPheGlnAlaSerSerGlyMetA : 189 ! !!:!!||||||.!.|||||||||!!!||||||.!.|||..!:!!:!! !! : gSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisThrS 1028956 : AAGTATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACACTA : 1028900 190 : laIleAspAlaGlnValAlaLeuLeuLeuArgTyrThrAlaAlaArgPheGluLeu : 207 :!!!::!!!.!! !..!||||||||||||! !!:!.!!|||||||||||||||:!! erMetAsnValLeuThrAlaLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIle 1028899 : GTATGAATGTGCTAACTGCATTGTTATTACTATTTGCTGCAGCTCGTTTCGAGATA : 1028846 208 : LeuAlaMetGlnLeuHisAlaAlaThrSerAspArgGluLeuAsnAlaCysIleLy : 226 ||| !|||:!!|||... !!.!!:!..! !..! !|||! ! !|||!!:|| LeuMetMetGluLeuArgAsnValSerAspIleGluThrLeuIleLysCysMetLy 1028845 : CTGATGATGGAGCTGAGGAATGTCAGTGACATTGAAACACTGATTAAATGTATGAA : 1028789 227 : sValHisSerGluLeuLeuArg : 233 | !:!!||| :!!! !||| sLysTyrSerIleValArgArg 1028788 : AAAGTATTCGATCGTACGGAGG : 1028766 vulgar: gi|805759618|ref|XP_012152350.1| 95 233 . KQ414618.1 1029179 1028765 - 271 M 138 414 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028766 1029179 271 - . gene_id 2 ; sequence gi|805759618|ref|XP_012152350.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028766 1029179 . - . KQ414618.1 exonerate:protein2genome:local exon 1028766 1029179 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028766 1029179 271 - . alignment_id 2 ; Query gi|805759618|ref|XP_012152350.1| ; Align 1029180 96 414 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759618|ref|XP_012152350.1| PREDICTED: uncharacterized protein LOC105664057 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 250 Query range: 95 -> 233 Target range: 1038346 -> 1037932 96 : PheGlnValLeuTyrPheAspMetGluAspPheCysLysArgAlaThrSerSerGl : 114 !!.||| !||| ! !!:|||:!! !! !|||:!!! !|||! ! !!! !|| LeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGl 1038346 : TTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGA : 1038292 115 : uArgIleValLeuGlnArgTyrValAspArgTyrLysTyrPheHisGlyValTyrT : 133 |||| !|||!!!||||||||||||:!!!:!:!:... |||::: ... !: uArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysS 1038291 : AAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTT : 1038235 134 : hrLeuTrpCysPheLeuThrThrMetPheValIleSerGlyProLeuTyrSerPro : 151 !!! !|||! !!:!||||||.!!!!:.!!:!!:!! !||| !||| !! ! !! erSerTrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSer 1038234 : CGTCATGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCC : 1038181 152 : GlnThrPheProThrHisAlaIleTyrProPheProValGluHisGlnProLeuLy : 170 .!. !!|||||||||:!!|||:!!|||||||||||||||.!. !:!!||||||!: AspProPheProThrAsnAlaValTyrProPheProValAsnPheGluProLeuAr 1038180 : GATCCTTTTCCAACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAG : 1038124 171 : sCysLeuIlePhePheHisGlnSerLeuValGlyPheGlnAlaSerSerGlyMetA : 189 ! !!:!!||||||.!.|||||||||!!!||||||.!.|||..!:!!:!! ! : gSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisAlaS 1038123 : AAGCATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTA : 1038067 190 : laIleAspAlaGlnValAlaLeuLeuLeuArgTyrThrAlaAlaArgPheGluLeu : 207 :!!!::!!!.!! !||||||||||||! !!:!|||.!!||||||||||||::: erMetAsnValLeuSerAlaLeuLeuLeuLeuPheThrThrAlaArgPheGluIle 1038066 : GTATGAATGTGCTTTCTGCACTGTTATTGCTATTCACTACAGCtcgtttcgaaata : 1038013 208 : LeuAlaMetGlnLeuHisAlaAlaThrSerAspArgGluLeuAsnAlaCysIleLy : 226 ||| !! !:!!|||... !!.!!.!..! !..! !|||! ! ! !!!!:|| LeuMetThrGluLeuArgAsnValAsnAspIleGluThrLeuIleLysSerMetLy 1038012 : ttgaTGACGGAGTTGAGGAATGTCAATGATATCGAAACACTGATTAAGAGTATGAA : 1037956 227 : sValHisSerGluLeuLeuArg : 233 | !:!!||| :!!! !||| sLysTyrSerThrValArgArg 1037955 : AAAGTATTCGACTGTGCGGAGG : 1037933 vulgar: gi|805759618|ref|XP_012152350.1| 95 233 . KQ414618.1 1038346 1037932 - 250 M 138 414 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037933 1038346 250 - . gene_id 3 ; sequence gi|805759618|ref|XP_012152350.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1037933 1038346 . - . KQ414618.1 exonerate:protein2genome:local exon 1037933 1038346 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037933 1038346 250 - . alignment_id 3 ; Query gi|805759618|ref|XP_012152350.1| ; Align 1038347 96 414 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759618|ref|XP_012152350.1| PREDICTED: uncharacterized protein LOC105664057 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 206 Query range: 94 -> 232 Target range: 1062775 -> 1062361 95 : GlnPheGlnValLeuTyrPheAspMetGluAspPheCysLysArgAlaThrSerSe : 113 !::.!!||||||||| ! :!::!!! ||| ||| !|||!.!!.!!: ArgIleGlnValLeuValGlyLysValLysAlaPheValLysValAlaAsnLysAs 1062775 : CGTATTCAGGTGTTGGTAGGAAAAGTAAAGGCGTTTGTAAAAGTGGCAAACAAGAA : 1062721 114 : rGluArgIleValLeuGlnArgTyrValAspArgTyrLysTyrPheHisGlyValT : 132 !|||! !! :!!:!!||| !!|||||||||||||||||| ||| !|||..! nGluIleLysIleIleGlnGlyTyrValAspArgTyrLysArgPhePheGlyThrI 1062720 : CGAGATTAAGATAATACAAGGATACGTGGATCGATATAAACGATTTTTCGGAACAA : 1062664 133 : yrThrLeuTrpCysPheLeuThrThrMetPheValIleSerGlyProLeuTyrSer : 150 .!!:!! ! ! ! ! :!!||| !!!: !!! !! !!.!||||||!:!||| leAlaMetGlyTyrValMetThrGlyIleThrPheSerLeuAlaProLeuPheSer 1062663 : TAGCAATGGGATACGTAATGACTGGAATCACGTTCAGTTTGGCGCCTCTGTTTTCC : 1062610 151 : ProGlnThrPheProThrHisAlaIleTyrProPheProValGluHisGlnProLe : 169 !||| !!!.|||.!! !!!.! !|||||| !!:!!:!!! ! ! !:! ValGlnGluLeuProAlaAspGlyTrpIleProPheSerIleLysProLeuGlyVa 1062609 : GTACAAGAATTGCCAGCAGACGGATGGATCCCGTTTTCCATTAAACCACTGGGAGT : 1062553 170 : uLysCysLeuIlePhePheHisGlnSerLeuValGlyPheGlnAlaSerSerGlyM : 188 ! ! ||||||:!!!:!||| ||| !! ! ! !.!!|||.!!:!!! ! !!! lTyrCysLeuValTyrPheValGlnValTyrCysIleLeuGlnThrAlaPheCysI 1062552 : ATATTGCCTCGTATACTTTGTGCAGGTTTACTGCATTCTCCAAACAGCGTTCTGCA : 1062496 189 : etAlaIleAspAlaGlnValAlaLeuLeuLeuArgTyrThrAlaAlaArgPheGlu : 206 !:::!:!:||| !..!:!!|||||||||:!!!!!!:!:!!||||||!:!!!.!!: leSerValAspPheMetIleAlaLeuLeuIleSerPheSerAlaAlaLysLeuAsp 1062495 : TTAGCGTGGATTTCATGATCGCTCTTCTAATCAGCTTCTCCGCGGCTAAATTAGAC : 1062442 207 : LeuLeuAlaMetGlnLeuHisAlaAlaThrSerAspArgGluLeuAsnAlaCysIl : 225 :!!|||!.!|||:!!|||!.. !|||!.!.!! !! !! !||| ::!|||:! IleLeuGlyMetLysLeuArgLysAlaAsnGlyHisAspValLeuValSerCysVa 1062441 : ATACTGGGGATGAAACTGCGAAAAGCGAATGGCCACGACGTGCTGGTAAGCTGTGT : 1062385 226 : eLysValHisSerGluLeuLeu : 232 !|||! !|||..!|||:!!:!! lLysGluHisGlnGluIleIle 1062384 : CAAAGAACACCAAGAGATAATA : 1062362 vulgar: gi|805759618|ref|XP_012152350.1| 94 232 . KQ414618.1 1062775 1062361 - 206 M 138 414 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1062362 1062775 206 - . gene_id 4 ; sequence gi|805759618|ref|XP_012152350.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1062362 1062775 . - . KQ414618.1 exonerate:protein2genome:local exon 1062362 1062775 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1062362 1062775 206 - . alignment_id 4 ; Query gi|805759618|ref|XP_012152350.1| ; Align 1062776 95 414 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795870|ref|XP_012143126.1| PREDICTED: uncharacterized protein LOC100881791 [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 385 Query range: 3 -> 198 Target range: 3157438 -> 3158130 4 : IleIleIleTyrSerPhePheIleLeuGlnValLeuAspIlePhePheAsnValGl : 22 ::::::::: !|||.!! !!:!!! !|||:!!||||||:!! .!!||||||:! LeuLeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIleAsnValGl 3157439 : cttcttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCAACGTGGA : 3157493 23 : nAsnGlnAspGluPheThrGluAsnPheThrLeuThrSerMetAlaLeuAsnValL : 41 !!:!||||||!!:|||!:::::||||||::::::|||:!!:!!!.!!!! !..!! uSerGlnAspAspPheSerAspAsnPheSerValThrAlaValValPheLeuThrT 3157494 : GAGCCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTTCTCACGT : 3157550 42 : euLeuLysArgHisMetLeuSerThrArgArgThrAsnIleLeuSerLeuIleLys : 59 !!!!|||! ! !!!:||| !! !|||||| !|||.!!:!!! !|||||| ! rpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuIleAsp 3157551 : GGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGATCGAT : 3157604 60 : ArgLeuAspLysSerHisPheLeuProValThrLysGluGluMetLysIleArgSe : 78 ! !|||.!.!!.!.!! |||! !|||||| !! !||||||! :!!||||||:! ThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIleArgAl 3157605 : ACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATTAGAGC : 3157661 79 : rLysPheGluAsnIleIle{Gl} >>>> Target Intron 1 >>>> {u}C : 86 !|||||||||!!.|||! !{||} 107 bp {|}! aLysPheGluLysIleThr{Gl}++ ++{u}T 3157662 : GAAATTCGAGAAGATCACC{GA}gt.........................ag{A}T : 3157792 87 : ysAlaThrLysMetTyrAlaThrGlyLeuAlaPhePheAlaPheSerValProPhe : 104 ! !|||! ||| !!:: ||| ... ..!|||! !:!! ! ! rpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrVal 3157793 : GGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATATACGTG : 3157846 105 : IleSerIleValIleAspPheLysSerArgLysLeuTyrAlaArgMetTrpValPr : 123 ! !|||:!!:!!|||||||||!..!:!||||||||| !||| |||:!!|| ArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIlePr 3157847 : AGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACC : 3157903 124 : oTyrAsnTyrSerSerAlaSerLeuTyrLeuLeuThrSerSerTyrGluValValA : 142 ||||:!!|||||| !!||| !!:!!!:!:!!||||||||| !:!!:!!!.!:!!| oTyrAspTyrSerProAlaProIlePheIleLeuThrSerValHisGlnAlaIleA 3157904 : CTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTCCGTCCATCAAGCTATAG : 3157960 143 : laSerIleTyrGlyValSerIleSerIleAlaCysGluCysLeuTyrThrGlyLeu : 160 |||||! !! !!!! !!!:!!.!! !!: !||||||||||||||| laSerThrIleCysCysThrSerThrValThrValAspThrLeuTyrThrGlyLeu 3157961 : CCTCGACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTATACACTGGCTTG : 3158014 161 : IleLeuHisValCysCysGlnPheGluIleLeuGluHisArgPheLysThrLeuAs : 179 :!::!!:!!:!!! !|||||||||||||||||||||||||||.!.!:!!.!:!!!! LeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLy 3158015 : TTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAA : 3158071 180 : nGlyLysAspThrArgValValAsnGlnCysAlaSerHisHisAsnLeuIleTyrL : 198 . !:!!.!. ! ! !|||!!.|||||||||..!||||||:!!! !||||||: sThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIleTyrG 3158072 : AACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTATATACC : 3158128 199 : ys : 198 !! ln 3158129 : AG : 3158130 vulgar: gi|805795870|ref|XP_012143126.1| 3 198 . KQ414646.1 3157438 3158130 + 385 M 81 243 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157439 3158130 385 + . gene_id 1 ; sequence gi|805795870|ref|XP_012143126.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3157439 3157683 . + . KQ414646.1 exonerate:protein2genome:local exon 3157439 3157683 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3157684 3157685 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3157684 3157790 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3157789 3157790 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3157791 3158130 . + . KQ414646.1 exonerate:protein2genome:local exon 3157791 3158130 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157439 3158130 385 + . alignment_id 1 ; Query gi|805795870|ref|XP_012143126.1| ; Align 3157439 4 243 ; Align 3157792 86 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795870|ref|XP_012143126.1| PREDICTED: uncharacterized protein LOC100881791 [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 378 Query range: 3 -> 198 Target range: 3163966 -> 3164658 4 : IleIleIleTyrSerPhePheIleLeuGlnValLeuAspIlePhePheAsnValGl : 22 :!!:!!:!! !|||.!! !:!!! !|||:!!||||||:!! .!!||||||:! LeuLeuLeuSerSerLeuAlaLeuSerGlnIleLeuAspValAlaIleAsnValGl 3163967 : CTTCTTCTAAGCAGCCTCGCCCTCTCGCAAATATTAGACGTAGCGATCAACGTGGA : 3164021 23 : nAsnGlnAspGluPheThrGluAsnPheThrLeuThrSerMetAlaLeuAsnValL : 41 !!:!||||||!!:|||::::::||||||::::::|||:!!:!!!.!!!! !..!! uSerGlnAspAspPheSerAspAsnPheSerIleThrAlaValValPheLeuThrT 3164022 : GAGCCAGGATGACTTCagtgacaatttttctatcaccGCTGTGGTGTTTCTCACGT : 3164078 42 : euLeuLysArgHisMetLeuSerThrArgArgThrAsnIleLeuSerLeuIleLys : 59 !!!!|||! ! !!!:||| !! !|||||| !|||.!!:!!! !|||||| ! rpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuIleAsp 3164079 : GGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGATCGAT : 3164132 60 : ArgLeuAspLysSerHisPheLeuProValThrLysGluGluMetLysIleArgSe : 78 ! !|||.!.!!.!.!! |||! !|||||| !! !||||||! :!!||||||:! ThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIleArgAl 3164133 : ACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATTAGAGC : 3164189 79 : rLysPheGluAsnIleIle{Gl} >>>> Target Intron 1 >>>> {u}C : 86 !|||||||||!!.|||! !{||} 107 bp {|}! aLysPheGluLysIleThr{Gl}++ ++{u}T 3164190 : GAAATTCGAGAAGATCACC{GA}gt.........................ag{A}T : 3164320 87 : ysAlaThrLysMetTyrAlaThrGlyLeuAlaPhePheAlaPheSerValProPhe : 104 ! !|||! ||| !!:! !||| !.!!! !||||||!!!:!! ! ! rpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleCysAlaPheTrpIleTyrVal 3164321 : GGAACACGATTGGCTACTGGAGTTTACTATTAATTTGTGCGTTCTGGATATACGTG : 3164374 105 : IleSerIleValIleAspPheLysSerArgLysLeuTyrAlaArgMetTrpValPr : 123 ! !|||:!!:!!! !||||||!..|||||||||||| !||| |||:!!|| ArgSerLeuLeuThrAspPheSerSerArgLysLeuMetPheArgAlaTrpLeuPr 3164375 : AGATCGCTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGCATGGTTACC : 3164431 124 : oTyrAsnTyrSerSerAlaSerLeuTyrLeuLeuThrSerSerTyrGluValValA : 142 ||||:!!|||||| !!||| !!:!!!:!:!!||||||! ! !:!!:!!!.!:!!| oTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAlaIleA 3164432 : CTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAG : 3164488 143 : laSerIleTyrGlyValSerIleSerIleAlaCysGluCysLeuTyrThrGlyLeu : 160 ||:!!! !! !!!! |||:!!.!! !!:! !||||||||||||||| laAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeu 3164489 : CCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTG : 3164542 161 : IleLeuHisValCysCysGlnPheGluIleLeuGluHisArgPheLysThrLeuAs : 179 :!::!!:!!:!!! !|||||||||||||||||||||||||||.!.!:!!.!:!!!! LeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLy 3164543 : TTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAA : 3164599 180 : nGlyLysAspThrArgValValAsnGlnCysAlaSerHisHisAsnLeuIleTyrL : 198 . !:!!.!. ! ! !|||!!.|||||||||..!||||||:!!! !||||||: sThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIleTyrG 3164600 : AACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTATATACC : 3164656 199 : ys : 198 !! ln 3164657 : AG : 3164658 vulgar: gi|805795870|ref|XP_012143126.1| 3 198 . KQ414646.1 3163966 3164658 + 378 M 81 243 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3163967 3164658 378 + . gene_id 2 ; sequence gi|805795870|ref|XP_012143126.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3163967 3164211 . + . KQ414646.1 exonerate:protein2genome:local exon 3163967 3164211 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164212 3164213 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164212 3164318 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3164317 3164318 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164319 3164658 . + . KQ414646.1 exonerate:protein2genome:local exon 3164319 3164658 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3163967 3164658 378 + . alignment_id 2 ; Query gi|805795870|ref|XP_012143126.1| ; Align 3163967 4 243 ; Align 3164320 86 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795870|ref|XP_012143126.1| PREDICTED: uncharacterized protein LOC100881791 [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 325 Query range: 3 -> 199 Target range: 3159737 -> 3160401 4 : IleIleIleTyrSerPhePheIleLeuGlnValLeuAspIlePhePheAsnValGl : 22 :!!:!!:!! !!!!||||||:!! !|||:!!|||||||||...|||||||||:! ValValLeuSerThrPhePheValAlaGlnIleLeuAspIleIlePheAsnValGl 3159738 : GTAGTTCTTAGCACGTTTTTCGTCGCCCAGATATTggacattattttcaacgtgGA : 3159792 23 : nAsnGlnAspGluPheThrGluAsnPheThrLeuThrSerMetAlaLeuAsnValL : 41 !|||||||||||||||!:!!!:|||||| !:!!|||!!! !.!:!!||| !| uAsnGlnAspGluPheSerAspAsnPheCysIleThrCysCysValMetAsnSerL 3159793 : GAATCAAGACGAGTTTAGCGACAATTTCTGCATAACGTGCTGCGTGATGAACAGCC : 3159849 42 : euLeuLysArgHisMetLeuSerThrArgArgThrAsnIleLeuSerLeuIleLys : 59 || !||| !:!!! ||| !! ! !!||| !! |||! !!:!|||||| ! euGlyLysLeuTyrSerLeuLeuIleGlyArgGluMetIleGlnAsnLeuIleAsp 3159850 : TTGGAAAGTTGTACAGCTTGCTGATAGGACGAGAAATGATCCAAAATTTAATAGAC : 3159903 60 : ArgLeuAspLysSerHisPheLeuProValThrLysGluGluMetLysIleArgSe : 78 !|||.!.!....!! !.!! !|||:!! !:!!! !|||! :!!||||||! SerLeuGlnSerAspProLeuArgProLeuAspGluValGluAsnGluIleArgLe 3159904 : TCGCTACAAAGTGACCCTCTTAGGCCGTTGGACGAAGTGGAGAATGAAATTCGATT : 3159960 79 : rLysPheGluAsnIleIle{Gl} >>>> Target Intron 1 >>>> {u}C : 86 !!:! !|||!!.! !|||{||} 73 bp {|} uArgHisGluLysThrIle{Gl}++ ++{u}L 3159961 : GAGACACGAGAAGACAATC{GA}gt.........................ag{A}A : 3160057 87 : ysAlaThrLysMetTyrAlaThrGlyLeuAlaPhePheAlaPheSerValProPhe : 104 !:!!! ! |||.!!..! !! !!.!.!. !||| !.!!||| !.!. ysLeuSerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValTrpMet 3160058 : AGCTCTCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTATGGATG : 3160111 105 : IleSerIleValIleAspPheLysSerArgLysLeuTyrAlaArgMetTrpValPr : 123 :!:||| !:!!! ! |||!:!! !|||:!!||| ! !|||:!:|||:!!|| LeuSerAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrpLeuPr 3160112 : TTGTCGGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGGTTACC : 3160168 124 : oTyrAsnTyr<->SerSerAlaSerLeuTyrLeuLeuThrSerSerTyrGluValV : 141 |!:!:!!||| :!!!!! !.!!:!!!:! !||||||! !:!!|||:!! !!| oPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGlnPheV 3160169 : TTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAGTTTG : 3160225 142 : alAlaSerIleTyrGlyValSerIleSerIleAlaCysGluCysLeuTyrThrGly : 159 ||.!! !|||!:! !..!!!! ! !!!:!.! !!!: !|||!:!!:!||| alThrLeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheSerGly 3160226 : TAACTCTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCAGCGGA : 3160279 160 : LeuIleLeuHisValCysCysGlnPheGluIleLeuGluHisArgPheLysThrLe : 178 |||:!::!!|||:!!! !||||||||||||||||||:!!||||||.!.|||!:!:! LeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysSerIl 3160280 : CTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGAGCAT : 3160336 179 : uAsnGlyLysAspThrArgValValAsnGlnCysAlaSerHisHisAsnLeuIleT : 197 !!!. ! ! ! ! !!.!!!.|||||||||! !|||||| !!! !|||| eLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrArgIleT 3160337 : TAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGCATAT : 3160393 198 : yrLysPhe : 199 |||||||| yrLysPhe 3160394 : ACAAGTTT : 3160401 vulgar: gi|805795870|ref|XP_012143126.1| 3 199 . KQ414646.1 3159737 3160401 + 325 M 81 243 S 0 2 5 0 2 I 0 69 3 0 2 S 1 1 M 41 123 G 0 3 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3159738 3160401 325 + . gene_id 3 ; sequence gi|805795870|ref|XP_012143126.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3159738 3159982 . + . KQ414646.1 exonerate:protein2genome:local exon 3159738 3159982 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3159983 3159984 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3159983 3160055 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3160054 3160055 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3160056 3160401 . + . KQ414646.1 exonerate:protein2genome:local exon 3160056 3160401 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3159738 3160401 325 + . alignment_id 3 ; Query gi|805795870|ref|XP_012143126.1| ; Align 3159738 4 243 ; Align 3160057 86 123 ; Align 3160183 127 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795870|ref|XP_012143126.1| PREDICTED: uncharacterized protein LOC100881791 [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 250 Query range: 105 -> 266 Target range: 3150095 -> 3150811 106 : SerIleValIleAspPheLysSerArgLysLeuTyrAlaArgMetTrpValProTy : 124 |||:!::!! !||||||!!...!|||:!!||| !||| |||:!!|||!: SerLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgAlaTrpLeuProPh 3150096 : TCGTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAGCCTGGCTGCCCTT : 3150150 125 : rAsnTyrSerSerAlaSerLeuTyrLeuLeuThrSerSerTyrGluValValAlaS : 143 !:!!|||||| ! !!!!!! !|||! !:!!.!!! ! !:!!:!!:!!|||||| eAspTyrSerLeuProThrTyrTyrTyrIleAlaTyrValHisGlnIleValAlaL 3150151 : CGATTACTCTCTGCCAACTTACTATTACATCGCGTACGTTCATCAGATCGTCGCGC : 3150207 144 : erIleTyrGlyValSerIleSerIleAlaCysGluCysLeuTyrThrGlyLeuIle : 161 !||| ! ! ! ! !:!:!!||||||!!: :!! ! !||||||:!! euIleGlyThrSerLeuSerAsnValAlaCysAspValIleIleCysGlyLeuLeu 3150208 : TGATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCATCTGCGGGTTGCTC : 3150261 162 : LeuHisValCysCysGlnPheGluIleLeuGluHisArgPheLysThrLeuAsnGl : 180 :!!|||!.!||| !!||| |||||||||:!!||||||.!.||| !:!!!.. ValHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMetLysGluMetThrGl 3150262 : GTTCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATGAAGGAGATGACGCA : 3150318 181 : yLysAspThrArgValValAsnGlnCysAlaSerHisHisAsnLeuIleTyr{Ly} : 198 !:!!.!.! !! ! !:!!...:!! !!.! !! !|||:!!! !:!!|||{ } nGluGlnArgProAsnIleGlyLysIleValArgPheHisAspTyrLeuTyr{Gl} 3150319 : GGAACAGAGGCCGAATATCGGGAAAATCGTTCGTTTCCACGATTATCTTTAC{GG} : 3150372 199 : >>>> Target Intron 1 >>>> {s}PheAlaAspValIleAsnAsnGlu : 206 230 bp {!}!:!!.! !..!!!:.!..!.:!! ++ ++{y}TyrValPheThrMetGlnGluLys 3150373 : gt.........................ag{G}TACGTTTTCACGATGCAAGAGAAG : 3150626 207 : PheLysThrValMetSerPheGlnPhePheAsnSerThrAlaMetIleCysLeuSe : 225 |||!:! !:!!!!:.!! ! |||.!!!!.:::|||||| !:!::!:|||!!!! PheArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuValValCysPheIl 3150627 : TTCAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGGTAGTGTGTTTCAT : 3150683 226 : rIleTyrGlnLeuThrTyrAlaLysAsn<->SerThrAlaPheMetGluIleMetM : 243 !:!:|||:!!|||.!! !!.!! |||:!! !!:!:!!:!!.!!:!:: eLeuTyrGluLeuAlaAsnThrProProIleSerSerLysTyrLeuGlnPheValL 3150684 : CCTGTACGAATTGGCGAACACGCCTCCAATCAGCTCCAAGTACCTGCAATTTGTCC : 3150740 244 : etTyrLeuValCysValPheLeuGlnIleLeuPheTyrCysLeuCysGlyAsnMet : 261 !!||||||!.!|||:!!.!. !||||||!!!|||||||||! !! !|||.!...! euTyrLeuAlaCysMetMetThrGlnIlePhePheTyrCysTrpTyrGlyGluGln 3150741 : TGTACCTGGCCTGTATGATGACGCAGATCTTCTTTTACTGCTGGTACGGCGAGCAG : 3150794 262 : ValLysMetLysVal : 266 :!!|||:!!|||||| LeuLysLeuLysVal 3150795 : TTGAAACTGAAGGTA : 3150811 vulgar: gi|805795870|ref|XP_012143126.1| 105 266 . KQ414646.1 3150095 3150811 + 250 M 92 276 S 0 2 5 0 2 I 0 226 3 0 2 S 1 1 M 36 108 G 0 3 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150096 3150811 250 + . gene_id 4 ; sequence gi|805795870|ref|XP_012143126.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3150096 3150373 . + . KQ414646.1 exonerate:protein2genome:local exon 3150096 3150373 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150374 3150375 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150374 3150603 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150602 3150603 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150604 3150811 . + . KQ414646.1 exonerate:protein2genome:local exon 3150604 3150811 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150096 3150811 250 + . alignment_id 4 ; Query gi|805795870|ref|XP_012143126.1| ; Align 3150096 106 276 ; Align 3150605 199 108 ; Align 3150716 235 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795870|ref|XP_012143126.1| PREDICTED: uncharacterized protein LOC100881791 [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 105 -> 203 Target range: 3180110 -> 3180404 106 : SerIleValIleAspPheLysSerArgLysLeuTyrAlaArgMetTrpValProTy : 124 |||:!!|||! !:!!|||:!! ! !!!:!||| ! !||| ||| !!||||| SerLeuValThrAsnPheGlnHisGlyArgLeuThrTyrArgGlyTrpPheProTy 3180111 : TCGTTAGTGACCAACTTTCAACACGGCAGACTAACCTACAGAGGCTGGTTCCCTTA : 3180165 125 : rAsnTyrSerSerAlaSerLeuTyrLeuLeuThrSerSerTyrGluValValAlaS : 143 |:!!|||!!!!!!||| !|||!:!! !||||||! !:!! :!!:!!:!!..! rAspTyrThrThrAlaValLeuPheProLeuThrTyrAlaLeuGlnLeuLeuCysV 3180166 : CGATTACACGACCGCCGTACTTTTTCCATTGACATACGCTCTGCAGCTATTATGCG : 3180222 144 : erIleTyrGlyValSerIleSerIleAlaCysGluCysLeuTyrThrGlyLeuIle : 161 !:!! ! !!!!||| !:!!:!! !!: !|||!:! !||||||:!: alLeuValTyrSerTrpIleHisValSerValAspIleLeuPhePheGlyLeuLeu 3180223 : TGCTCGTATATTCCTGGATCCACGTTTCAGTGGATATTCTCTTCTTCGGACTGTTG : 3180276 162 : LeuHisValCysCysGlnPheGluIleLeuGluHisArgPheLysThrLeuAsnGl : 180 :!!!!.:!!||||||||||||!!:|||||| ||||||!..!:!:!!!.... MetGlnLeuCysCysGlnPheAspIleLeuPheSerArgPheSerSerIleThrSe 3180277 : ATGCAACTGTGCTGTCAATTCGAcattctcttctctcgtttcAGTAGCATAACGTC : 3180333 181 : yLysAspThrArgValValAsnGlnCysAlaSerHisHisAsnLeuIleTyrLysP : 199 !:!!:!!! ! !!|||:!!...::!||| ! !!||||||:!! !||||||::!! rGluAsnLysGlyValLeuArgArgCysIleArgHisHisAspArgIleTyrArg* 3180334 : GGAGAACAAGGGTGTTTTACGAAGATGCATTCGTCATCACGACAGAATTTACCGGT : 3180390 200 : heAlaAspValIle : 203 !|||! !||| **PheAspGluIle 3180391 : AATTCGACGAGATC : 3180404 vulgar: gi|805795870|ref|XP_012143126.1| 105 203 . KQ414646.1 3180110 3180404 + 178 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180111 3180404 178 + . gene_id 5 ; sequence gi|805795870|ref|XP_012143126.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180111 3180404 . + . KQ414646.1 exonerate:protein2genome:local exon 3180111 3180404 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180111 3180404 178 + . alignment_id 5 ; Query gi|805795870|ref|XP_012143126.1| ; Align 3180111 106 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795870|ref|XP_012143126.1| PREDICTED: uncharacterized protein LOC100881791 [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 99 -> 199 Target range: 3174308 -> 3174612 100 : PheSerValProPheIleSerIleValIleAspPheLysSerArgLysLeuTyrAl : 118 ::: ::: ||| |||||| !!! ! !||||||! !|||:!!||| ! TyrCysIleTrpPheSerSerIlePheThrAlaPheLysIleArgGluLeuProLe 3174309 : tactgtatatggTTCTCGTCGATCTTCACGGCTTTTAAGATCAGAGAGTTACCCCT : 3174363 119 : aArgMetTrpValProTyrAsnTyr----SerSerAlaSerLeuTyrLeuLeuThr : 135 !||| |||:!! !!!:!...! ####:!!!!! !.!!:!!!:! !|||||| uArgGlyTrpLeuThrPheArgLeu####AlaThrLeuGlyIlePheSerLeuThr 3174364 : TCGAGGATGGTTAACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACC : 3174418 136 : SerSerTyrGluValValAlaSerIleTyrGlyValSerIleSerIleAlaCysGl : 154 ! !:!!|||:!! !!|||.!! !|||!:! !..!||| !! !|||!.!! !!! TyrAlaTyrGlnPheValThrLeuIlePheLeuThrSerAlaIleIleGlySerAs 3174419 : TACGCTTATCAGTTTGTAACTCTGATATTCCTTACTTCTGCTATTATCGGTTCTGA : 3174475 155 : uCysLeuTyrThrGlyLeuIleLeuHisValCysCysGlnPheGluIleLeuGluH : 173 : !|||!:!!:!||||||:!::!!|||:!!! !||||||||||||||||||:!!| pAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnH 3174476 : CAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAAC : 3174532 174 : isArgPheLysThrLeuAsnGlyLysAspThrArgValValAsnGlnCysAlaSer : 191 |||||.!.|||!:!:!!!!. ! ! ! ! !!.!!!.|||||||||! ! isArgLeuLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPhe 3174533 : ATCGTCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTT : 3174586 192 : HisHisAsnLeuIleTyrLysPhe : 199 |||||| !!! !|||||||||||| HisHisTyrArgIleTyrLysPhe 3174587 : CATCATTATCGCATATACAAGTTT : 3174612 vulgar: gi|805795870|ref|XP_012143126.1| 99 199 . KQ414646.1 3174308 3174612 + 166 M 27 81 F 0 4 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174309 3174612 166 + . gene_id 6 ; sequence gi|805795870|ref|XP_012143126.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174309 3174612 . + . KQ414646.1 exonerate:protein2genome:local exon 3174309 3174612 . + . insertions 0 ; deletions 0 ; frameshifts 4 KQ414646.1 exonerate:protein2genome:local similarity 3174309 3174612 166 + . alignment_id 6 ; Query gi|805795870|ref|XP_012143126.1| ; Align 3174309 100 81 ; Align 3174394 127 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795870|ref|XP_012143126.1| PREDICTED: uncharacterized protein LOC100881791 [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 193 -> 320 Target range: 3178372 -> 3179011 194 : AsnLeuIleTyrLysPheAlaAspValIleAsnAsnGluPheLysThrValMetSe : 212 |||...||| :::|||.!!.!...!:!:|||!.!! !|||:!! !:!!!!:! AsnPheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePh 3178373 : aatttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTT : 3178427 213 : rPheGlnPhePheAsnSerThrAlaMetIleCysLeuSerIleTyrGlnLeu<->T : 230 !.!.||||||! !! !|||:!!.!!:!!:!:|||||||||||||||:!!:!! | eLeuGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerT 3178428 : CCTGCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGA : 3178484 231 : hrTyrAlaLysAsnSerThrAlaPheMetGluIleMetMetTyrLeuValCysVal : 248 || ! ! ! !|||! ! !|||:!: ! ! |||||| !|||:!! hrIleAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMet 3178485 : CGATTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATG : 3178538 249 : PheLeuGlnIleLeuPheTyrCysLeuCysGlyAsnMetValLysMetLys >>> : 266 .!! !|||:!:! !!!.||||||! !! !|||||| !|||! !:!!||| LeuThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys++ 3178539 : CTCACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAGgt... : 3178594 267 : > Target Intron 1 >>>> ValCysTyrTrpIleSerAsnAlaThrIleVa : 276 182 bp ! ! !!|||! :!! ! !!||| !:! +-GluMetAspTrpThrAlaLeuProThrAspIl 3178595 : ......................acGAGATGGACTGGACGGCACTTCCCACCGATAT : 3178804 277 : lSerValMetGlnPheLeuPheAlaGluArgSerArgThrProIleGluPheThrS : 295 !!!! ! ! !!!.|||.!! !! !||||||!:! !|||:!!:!!.!.|||| eArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValLysMetThrS 3178805 : AAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTAAAATGACAA : 3178861 296 : erMetHisValValSerLeuSerLeuGluSerPheMetSer >>>> Target I : 309 || ||||||||| !|||||| !||||||||||||||| 73 erGlyHisValValValLeuSerAlaGluSerPheMetSer++ 3178862 : GCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTgt............. : 3178905 310 : ntron 2 >>>> LeuLeuLysThrSerTyrSerAlaTyrAsnLeuMet : 320 bp :!!:!!|||! !!!!||||||:!!|||||||||:!! ++IleMetLysIleThrTyrSerSerTyrAsnLeuLeu 3178906 : ............agaTCATGAAGATAACGTATTCGTCGTACAACCTCTTG : 3179011 vulgar: gi|805795870|ref|XP_012143126.1| 193 320 . KQ414646.1 3178372 3179011 + 162 M 36 108 G 0 3 M 36 108 5 0 2 I 0 178 3 0 2 M 43 129 5 0 2 I 0 69 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178373 3179011 162 + . gene_id 7 ; sequence gi|805795870|ref|XP_012143126.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3178373 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178373 3178591 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178592 3178593 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3178592 3178773 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3178772 3178773 . + . intron_id 0 ; splice_site "AC" KQ414646.1 exonerate:protein2genome:local cds 3178774 3178902 . + . KQ414646.1 exonerate:protein2genome:local exon 3178774 3178902 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178903 3178904 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3178903 3178975 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3178974 3178975 . + . intron_id 1 ; splice_site "ag" KQ414646.1 exonerate:protein2genome:local cds 3178976 3179011 . + . KQ414646.1 exonerate:protein2genome:local exon 3178976 3179011 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178373 3179011 162 + . alignment_id 7 ; Query gi|805795870|ref|XP_012143126.1| ; Align 3178373 194 108 ; Align 3178484 230 108 ; Align 3178774 266 129 ; Align 3178976 309 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795870|ref|XP_012143126.1| PREDICTED: uncharacterized protein LOC100881791 [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 268 -> 324 Target range: 3165300 -> 3165542 269 : TrpIleSerAsnAlaThrIleValSerValMetGlnPheLeuPheAlaGluArgSe : 287 |||! ||| !!.!! !|||!!! ! ! !!.:!!.!. !..!|||:! TrpThrSerLeuAsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAl 3165301 : TGGACGTCTTTGAACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGC : 3165355 288 : rArgThrProIleGluPheThrSerMetHisValValSerLeuSerLeuGluSerP : 306 ! !! !||||||||||||||||||!!:||||||||||||:!!!:!|||||||||| aValArgProIleGluPheThrSerIleHisValValSerValAsnLeuGluSerP 3165356 : AGTGAGGCCAATAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCT : 3165412 307 : heMetSer >>>> Target Intron 1 >>>> LeuLeuLysThrSerTyrS : 315 |||||:!! 74 bp :!!:!!||||||||||||| heMetAla++ ++ValIleLysThrSerTyrS 3165413 : TCATGGCAgt.........................agGTAATAAAAACTTCGTACT : 3165513 316 : erAlaTyrAsnLeuMetLysThrThrArg : 324 |||||!:!|||:!!!!::!! !!:!!:! erAlaPheAsnMetIleGlnGlnSerLys 3165514 : CCGCGTTCAACATGATCCAACAAAGCAAA : 3165542 vulgar: gi|805795870|ref|XP_012143126.1| 268 324 . KQ414646.1 3165300 3165542 + 112 M 40 120 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3165301 3165542 112 + . gene_id 8 ; sequence gi|805795870|ref|XP_012143126.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3165301 3165420 . + . KQ414646.1 exonerate:protein2genome:local exon 3165301 3165420 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165421 3165422 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165421 3165494 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3165493 3165494 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165495 3165542 . + . KQ414646.1 exonerate:protein2genome:local exon 3165495 3165542 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3165301 3165542 112 + . alignment_id 8 ; Query gi|805795870|ref|XP_012143126.1| ; Align 3165301 269 120 ; Align 3165495 309 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795870|ref|XP_012143126.1| PREDICTED: uncharacterized protein LOC100881791 [Megachile rotundata] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 268 -> 324 Target range: 3158772 -> 3159014 269 : TrpIleSerAsnAlaThrIleValSerValMetGlnPheLeuPheAlaGluArgSe : 287 |||! ||| !!.!! !|||!!! ! ! !!.:!!.!. !..!|||:! TrpThrSerLeuAsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAl 3158773 : TGGACGTCTTTGAACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGC : 3158827 288 : rArgThrProIleGluPheThrSerMetHisValValSerLeuSerLeuGluSerP : 306 ! !! !||||||||||||||||||!!:||||||||||||:!!!:!|||||||||| aValArgProIleGluPheThrSerIleHisValValSerValAsnLeuGluSerP 3158828 : AGTGAGGCCAATAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCT : 3158884 307 : heMetSer >>>> Target Intron 1 >>>> LeuLeuLysThrSerTyrS : 315 |||||:!! 74 bp :!!:!!||||||:!!|||| heMetAla++ ++ValIleLysThrAlaTyrS 3158885 : TCATGGCAgt.........................agGTAATAAAAACTGCGTACT : 3158985 316 : erAlaTyrAsnLeuMetLysThrThrArg : 324 |||||!:!|||:!!!!::!! !!:!!:! erAlaPheAsnMetIleGlnGlnSerLys 3158986 : CCGCGTTCAACATGATCCAACAAAGCAAA : 3159014 vulgar: gi|805795870|ref|XP_012143126.1| 268 324 . KQ414646.1 3158772 3159014 + 109 M 40 120 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158773 3159014 109 + . gene_id 9 ; sequence gi|805795870|ref|XP_012143126.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3158773 3158892 . + . KQ414646.1 exonerate:protein2genome:local exon 3158773 3158892 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158893 3158894 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158893 3158966 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3158965 3158966 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158967 3159014 . + . KQ414646.1 exonerate:protein2genome:local exon 3158967 3159014 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3158773 3159014 109 + . alignment_id 9 ; Query gi|805795870|ref|XP_012143126.1| ; Align 3158773 269 120 ; Align 3158967 309 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795870|ref|XP_012143126.1| PREDICTED: uncharacterized protein LOC100881791 [Megachile rotundata] Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 379 Query range: 3 -> 198 Target range: 1947265 -> 1946573 4 : IleIleIleTyrSerPhePheIleLeuGlnValLeuAspIlePhePheAsnValGl : 22 ::::::::: !|||.!! !!:!!! !|||:!!||||||:!! .!!||||||:! LeuLeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIleAsnValGl 1947265 : cttcttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCAACGTGGA : 1947211 23 : nAsnGlnAspGluPheThrGluAsnPheThrLeuThrSerMetAlaLeuAsnValL : 41 !!:!||||||!!:|||!:::::||||||::::::|||:!!:!!!.!!!! !..!! uSerGlnAspAspPheSerAspAsnPheSerValThrAlaValValPheLeuThrT 1947210 : GAGCCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTTCTCACGT : 1947154 42 : euLeuLysArgHisMetLeuSerThrArgArgThrAsnIleLeuSerLeuIleLys : 59 !!!!|||! ! !!!:||| !! !|||||| !|||.!!:!!! !|||||| ! rpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuIleAsp 1947153 : GGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGATCGAT : 1947100 60 : ArgLeuAspLysSerHisPheLeuProValThrLysGluGluMetLysIleArgSe : 78 ! !|||.!.!!.!.!! |||! !|||||| !! !||||||! :!!||||||:! ThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIleArgAl 1947099 : ACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATTAGAGC : 1947043 79 : rLysPheGluAsnIleIle{Gl} >>>> Target Intron 1 >>>> {u}C : 86 !|||||||||!!.|||! !{||} 107 bp {|}! aLysPheGluLysIleThr{Gl}++ ++{u}T 1947042 : GAAATTCGAGAAGATCACC{GA}gt.........................ag{A}T : 1946912 87 : ysAlaThrLysMetTyrAlaThrGlyLeuAlaPhePheAlaPheSerValProPhe : 104 ! !|||! ||| !!:: ||| ... ..!|||! !:!! ! ! rpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrVal 1946911 : GGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATATACGTG : 1946858 105 : IleSerIleValIleAspPheLysSerArgLysLeuTyrAlaArgMetTrpValPr : 123 ! !|||:!!:!!|||||||||!..!:!||||||||| !||| |||:!!|| ArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIlePr 1946857 : AGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACC : 1946801 124 : oTyrAsnTyrSerSerAlaSerLeuTyrLeuLeuThrSerSerTyrGluValValA : 142 ||||:!!|||||| !!||| !!:!!!:!:!!||||||! ! !:!!:!!!.!:!!| oTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAlaIleA 1946800 : CTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAG : 1946744 143 : laSerIleTyrGlyValSerIleSerIleAlaCysGluCysLeuTyrThrGlyLeu : 160 ||:!!! !! !!!! |||:!!.!! !!:! !||||||||||||||| laAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeu 1946743 : CCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTG : 1946690 161 : IleLeuHisValCysCysGlnPheGluIleLeuGluHisArgPheLysThrLeuAs : 179 :!::!!:!!:!!! !|||||||||||||||||||||||||||.!.!:!!.!:!!!! LeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLy 1946689 : TTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAA : 1946633 180 : nGlyLysAspThrArgValValAsnGlnCysAlaSerHisHisAsnLeuIleTyrL : 198 . !:!!.!. ! ! !|||!!.|||||||||..!||||||:!!! !||||||: sThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIleTyrG 1946632 : AACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTATATACC : 1946576 199 : ys : 198 !! ln 1946575 : AG : 1946574 vulgar: gi|805795870|ref|XP_012143126.1| 3 198 . KQ414661.1 1947265 1946573 - 379 M 81 243 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946574 1947265 379 - . gene_id 1 ; sequence gi|805795870|ref|XP_012143126.1| ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1947021 1947265 . - . KQ414661.1 exonerate:protein2genome:local exon 1947021 1947265 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1947019 1947020 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946914 1947020 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1946914 1946915 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946574 1946913 . - . KQ414661.1 exonerate:protein2genome:local exon 1946574 1946913 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1946574 1947265 379 - . alignment_id 1 ; Query gi|805795870|ref|XP_012143126.1| ; Align 1947266 4 243 ; Align 1946913 86 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795870|ref|XP_012143126.1| PREDICTED: uncharacterized protein LOC100881791 [Megachile rotundata] Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 268 -> 324 Target range: 1945931 -> 1945689 269 : TrpIleSerAsnAlaThrIleValSerValMetGlnPheLeuPheAlaGluArgSe : 287 |||! ||| !!.!! !|||!!! ! ! !!.:!!.!. !..!|||:! TrpThrSerLeuAsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAl 1945931 : TGGACGTCTTTGAACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGC : 1945877 288 : rArgThrProIleGluPheThrSerMetHisValValSerLeuSerLeuGluSerP : 306 ! !! !||||||||||||||||||!!:||||||||||||:!!!:!|||||||||| aValArgProIleGluPheThrSerIleHisValValSerValAsnLeuGluSerP 1945876 : AGTGAGGCCAATAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCT : 1945820 307 : heMetSer >>>> Target Intron 1 >>>> LeuLeuLysThrSerTyrS : 315 |||||:!! 74 bp :!!:!!||||||||||||| heMetAla++ ++ValIleLysThrSerTyrS 1945819 : TCATGGCAgt.........................agGTAATAAAAACTTCGTACT : 1945719 316 : erAlaTyrAsnLeuMetLysThrThrArg : 324 |||||!:!|||:!!!!::!! !!:!!:! erAlaPheAsnMetIleGlnGlnSerLys 1945718 : CCGCGTTCAACATGATCCAACAAAGCAAA : 1945690 vulgar: gi|805795870|ref|XP_012143126.1| 268 324 . KQ414661.1 1945931 1945689 - 112 M 40 120 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945690 1945931 112 - . gene_id 2 ; sequence gi|805795870|ref|XP_012143126.1| ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1945812 1945931 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1945931 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945690 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945690 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945690 1945931 112 - . alignment_id 2 ; Query gi|805795870|ref|XP_012143126.1| ; Align 1945932 269 120 ; Align 1945738 309 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: KQ414667.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold102, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 378 -> 428 Target range: 801752 -> 801451 379 : LysPheGlnArgValLeuGluIleMetGlnIleArgCysSerArgProCysLysLeuT : 398 :::|||...!:! !|||:!!||||||..!!!:|||! !!!! !|||||||||:!!| ArgPheSerGlnSerLeuGlnIleMetMetMetArgSerArgIleProCysLysIleT 801752 : CGTTTCTCTCAGAGTCTTCAGATCATGATGATGCGCTCGAGGATACCATGCAAGATAA : 801695 399 : hrAlaGlyGlyLeuTyrGluMetAsnIleGluAsnPheGlySer >>>> Target : 413 |||||!.! !!!!|||...|||::!:!:|||!:!|||..!!.! 15 hrAlaAlaLysPheTyrSerMetSerLeuGluSerPheSerLys++ 801694 : CCGCCGCTAAATTCTACAGCATGTCCTTGGAGAGCTTCTCGAAGgt............ : 801648 414 : Intron 1 >>>> MetIleLysThrCysValSerTyrPheThrValLeuLeuSerL : 427 1 bp :!::!!!..|||! ! !!|||||||||||||||||| !:!! ++ValLeuSerThrSerPheSerTyrPheThrValLeuThrAlaT 801647 : .............agGTACTCAGCACGTCTTTCTCCTACTTCACGGTCCTCACAGCCA : 801457 428 : euArg : 428 !!:! hrLys 801456 : CCAAA : 801452 vulgar: gi|805795905|ref|XP_012143137.1| 378 428 . KQ414667.1 801752 801451 - 108 M 34 102 5 0 2 I 0 147 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414667.1 exonerate:protein2genome:local gene 801452 801752 108 - . gene_id 1 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation + KQ414667.1 exonerate:protein2genome:local cds 801651 801752 . - . KQ414667.1 exonerate:protein2genome:local exon 801651 801752 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 801649 801650 . - . intron_id 1 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801500 801650 . - . intron_id 1 KQ414667.1 exonerate:protein2genome:local splice3 801500 801501 . - . intron_id 0 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801452 801499 . - . KQ414667.1 exonerate:protein2genome:local exon 801452 801499 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local similarity 801452 801752 108 - . alignment_id 1 ; Query gi|805795905|ref|XP_012143137.1| ; Align 801753 379 102 ; Align 801500 413 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805798911|ref|XP_012143985.1| PREDICTED: uncharacterized protein LOC100876205 [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 345 -> 411 Target range: 1387622 -> 1387955 346 : AspGlyIleGlyTyrSerLeuTyrSerCysSerTrpTyrSerLeuProAlaAsnVa : 364 :!: !!||| ! ! |||:::|||::: ||||||..!||| ! !!...! GluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProArgGl 1387623 : gAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCGAGA : 1387677 365 : lAlaLysAsnIleValLeuValIleLeuArgAlaGlnIleProValHisLeuThrA : 383 !|||::: ::::::|||:::|||||||||:!!|||! ! !:!! ||||||| uAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuThrA 1387678 : AGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCACTG : 1387734 384 : laGlyLysPhePheValValAsnLeuGluThrPheMetSer >>>> Target I : 397 ||||||||||| ! !:!!::!|||! .!!||| !:: 135 laGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387735 : CGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt............. : 1387778 398 : ntron 1 >>>> IleLeuLysThrSerMetSerTyrLeuSerIleLeuArgVal : 410 bp :::||||||.!!||| ||||||:!!|||:!!|||!.!!.! ++MetLeuLysAlaSerAlaSerTyrValSerValLeuHisAla 1387779 : ............agatgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTTGCATGCA : 1387950 411 : Met : 411 ||| Met 1387951 : ATG : 1387955 vulgar: gi|805798911|ref|XP_012143985.1| 345 411 . KQ414716.1 1387622 1387955 + 117 M 51 153 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387623 1387955 117 + . gene_id 1 ; sequence gi|805798911|ref|XP_012143985.1| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387623 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387623 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387623 1387955 117 + . alignment_id 1 ; Query gi|805798911|ref|XP_012143985.1| ; Align 1387623 346 153 ; Align 1387911 397 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805798911|ref|XP_012143985.1| PREDICTED: uncharacterized protein LOC100876205 [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 347 -> 411 Target range: 1409058 -> 1409528 348 : IleGlyTyrSerLeuTyrSerCysSerTrpTyrSerLeuProAlaAsnValAlaLy : 366 |||||| !!!!! !|||..!! ! !||||||!:!:!!! !:!!!!.! !::!:: IleGlyAspThrAlaTyrGluPheLeuTrpTyrAsnMetHisSerLysGluSerAr 1409059 : attggagACACGGCGTATGAATTTCTTTGGTATAATATGCATTCGAAGGAAAGCCG : 1409113 367 : sAsnIleValLeuValIleLeuArgAlaGlnIleProValHisLeuThrAlaGlyL : 385 ! !!!::!!|||||||||||||||:!!|||! ! ! !! ...||| |||| gLeuMetLeuLeuValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyL 1409114 : ACTTATGTTGCTTGTAATACTACGATCACAGAAAGGATTTACtttcacttttggaa : 1409170 386 : ysPhePheValValAsnLeuGluThrPheMetSer >>>> Target Intron : 397 ||||| :!!::!:!!|||!:!||| .!! 278 bp ysPheAlaSerLeuSerMetGluSerPheAlaGly++ 1409171 : aatttgcaagtCTTTCCATGGAAAGTTTTGCAGGCgt................... : 1409208 398 : 1 >>>> IleLeuLysThrSerMetSerTyrLeuSerIleLeuArgValMet : 411 |||:!!|||.!!||| ||||||:!!|||:!!|||! !!.!||| ++IleMetLysAlaSerAlaSerTyrIleSerValLeuLeuAlaMet 1409209 : ......agattATGAAAGCTTCTGCATCGTATATATCCGTATTGCTCGCAATG : 1409528 vulgar: gi|805798911|ref|XP_012143985.1| 347 411 . KQ414716.1 1409058 1409528 + 105 M 49 147 5 0 2 I 0 274 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1409059 1409528 105 + . gene_id 2 ; sequence gi|805798911|ref|XP_012143985.1| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1409059 1409205 . + . KQ414716.1 exonerate:protein2genome:local exon 1409059 1409205 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1409206 1409207 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1409206 1409483 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1409482 1409483 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409484 1409528 . + . KQ414716.1 exonerate:protein2genome:local exon 1409484 1409528 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1409059 1409528 105 + . alignment_id 2 ; Query gi|805798911|ref|XP_012143985.1| ; Align 1409059 348 147 ; Align 1409484 397 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805798911|ref|XP_012143985.1| PREDICTED: uncharacterized protein LOC100876205 [Megachile rotundata] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 347 -> 408 Target range: 1402444 -> 1402796 348 : IleGlyTyrSerLeuTyrSerCysSerTrpTyrSerLeuProAlaAsnValAlaLy : 366 |||||| !!!!! !|||..!! ! !||||||..!|||! !:!!!.!! !::!:! IleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSerGl 1402445 : ATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAGCCA : 1402499 367 : sAsnIleValLeuValIleLeuArgAlaGlnIleProValHisLeuThrAlaGlyL : 385 ! !:!!:!!! !||||||||||||:!!|||! ! !! !..||| |||| nLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyL 1402500 : ACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACGTttacttttggaa : 1402556 386 : ysPhePheValValAsnLeuGluThrPheMetSer >>>> Target Intron : 397 ||||| ::!::!||||||!:!|||! !:!! 169 bp ysPheSerSerLeuSerLeuGluSerPheThrAla++ 1402557 : aattttcaagtctCTCCTTGGAAAGCTTTACGGCCgt................... : 1402594 398 : 1 >>>> IleLeuLysThrSerMetSerTyrLeuSerIleLeu : 408 |||:!!|||..!||| ||||||:!!|||:!!||| ++IleMetLysValSerAlaSerTyrIleSerValLeu 1402595 : ......agATCATGAAAGTCTCAGCATCATATATATCAGTACTT : 1402796 vulgar: gi|805798911|ref|XP_012143985.1| 347 408 . KQ414716.1 1402444 1402796 + 103 M 49 147 5 0 2 I 0 165 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1402445 1402796 103 + . gene_id 3 ; sequence gi|805798911|ref|XP_012143985.1| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1402445 1402591 . + . KQ414716.1 exonerate:protein2genome:local exon 1402445 1402591 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1402592 1402593 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1402592 1402760 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1402759 1402760 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402761 1402796 . + . KQ414716.1 exonerate:protein2genome:local exon 1402761 1402796 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1402445 1402796 103 + . alignment_id 3 ; Query gi|805798911|ref|XP_012143985.1| ; Align 1402445 348 147 ; Align 1402761 397 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795896|ref|XP_012143135.1| PREDICTED: uncharacterized protein LOC100875381 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 165 -> 245 Target range: 18042 -> 17802 166 : LeuPheValSerIleProLeuSerSerProAlaLeuAspPheIleAlaProLeuAsnGlu : 185 ||||||:!!..!:!:|||! !|||!!!! ! !:!!:!!! ! ! !!! !||| ! LeuPheIleGlnValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIle 18042 : TTGTTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATA : 17985 186 : ThrArgThrLysLeuProLeuPheLysLeuAsnTyrIleValAspMetArgAspHisPhe : 205 |||! !!:! !! ! !:!!.!. ! !!|||.!!|||||| !!!::!!!:! ThrProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyr 17984 : ACGCCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTAT : 17925 206 : TyrIleValTyrLeuHisSerAlaTrpCysSerLeuIleIleValLeuIleValThrThr : 225 ||| !:!! ||||||.!!.!!!! ! !||||||:!!|||:!!:!: ! !.!! TyrTyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAla 17924 : TATTACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCC : 17865 226 : MetAspSerLeuTyrMetValIleIleHisTyrAlaCysGlyLeuPheAlaLeuCysGly : 245 |||!!! !|||||||||:!::!:!!.:!!.!!|||||||||||||||:!!..!||| CysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly 17864 : TGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 17805 vulgar: gi|805795896|ref|XP_012143135.1| 165 245 . KQ414772.1 18042 17802 - 125 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17803 18042 125 - . gene_id 1 ; sequence gi|805795896|ref|XP_012143135.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17803 18042 . - . KQ414772.1 exonerate:protein2genome:local exon 17803 18042 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17803 18042 125 - . alignment_id 1 ; Query gi|805795896|ref|XP_012143135.1| ; Align 18043 166 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795896|ref|XP_012143135.1| PREDICTED: uncharacterized protein LOC100875381 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 164 -> 243 Target range: 20562 -> 20325 165 : ValLeuPheValSerIleProLeuSerSerProAlaLeuAspPheIleAlaProLeuAsn : 184 !.!:!!|||:!!!!!:!:|||!!!:!! !! ! !||||||.!! !|||||||||||| AlaIlePheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsn 20562 : GCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAAC : 20505 185 : GluThrArgThrLysLeuProLeuPheLysLeuAsnTyrIleValAspMetArgAspHis : 204 :!!||||||! !::::!! !:!!!:! ! ! !!||| :!!||| ..!.!.:!! LysThrArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyr 20504 : AAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATAC : 20445 205 : PheTyrIleValTyrLeuHisSerAlaTrpCysSerLeuIleIleValLeuIleValThr : 224 !:! |||:!! :!!|||! ! !!:: !:!!!!::!! !:!!||| !! ! TyrMetIleMetIleIleHisIleMetPheValValIleMetValCysValIlePheCys 20444 : TACATGATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGT : 20385 225 : ThrMetAspSerLeuTyrMetValIleIleHisTyrAlaCysGlyLeuPheAlaLeu : 243 .!! |||! ! !|||:!! ! !:!:!!.:!!||||||||||||!!.|||:!! AlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaVal 20384 : GCTTGCGACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: gi|805795896|ref|XP_012143135.1| 164 243 . KQ414772.1 20562 20325 - 123 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20562 123 - . gene_id 2 ; sequence gi|805795896|ref|XP_012143135.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20562 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20562 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20326 20562 123 - . alignment_id 2 ; Query gi|805795896|ref|XP_012143135.1| ; Align 20563 165 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 150 Query range: 165 -> 251 Target range: 20583 -> 20325 166 : SerSerLeuTrpIlePheValSerLeuPheLeuCysIleProLeuSerSerPheAlaLeu : 185 :!! !|||!:::!! !!.!:!!:!!|||||||||:!:|||!!!:!! !!.!! !||| AlaHisLeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIleLeu 20583 : GCGCATTTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTG : 20526 186 : AspIleIleValProLeuAsnGluSerArgProArgValSerLeuPheLysLeuAsnTyr : 205 |||||| !!.!|||||||||:!!!!!||| !||||||! !:!!!:! ! ! !!||| AspIleTyrAlaProLeuAsnLysThrArgLysArgValPheValTyrProAlaTyrTyr 20525 : GACATTTACGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTAC : 20466 206 : IleMetAspMetGluAspHisPheTyrIleValTyrLeuHisSerAlaCysCysAlaLeu : 225 |||||| |||.!.:!!!:! |||:!! :!!|||! ! !! ! !.!:!! TrpMetAspProGluGlnTyrTyrMetIleMetIleIleHisIleMetPheValValIle 20465 : TGGATGGATCCTGAGCAATACTACATGATAATGATAATACACATAATGTTCGTGGTGATC : 20406 226 : AsnValValLeuIleValThrThrMetAspSerLeuTyrMetValIleIleHisTyrSer : 245 ! ||| !:!!||| !! !.!! |||! ! !|||:!! ! !:!:!!.:!!:!! MetValCysValIlePheCysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAla 20405 : ATGGTCTGTGTCATATTCTGTGCTTGCGACATGAACTACGTGTACGCTGTGCAGCACGCA : 20346 246 : CysGlyLeuPheAlaLeu : 251 |||||||||!!.|||:!! CysGlyLeuLeuAlaVal 20345 : TGCGGCTTATTGGCTGTC : 20326 vulgar: gi|805795905|ref|XP_012143137.1| 165 251 . KQ414772.1 20583 20325 - 150 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20583 150 - . gene_id 1 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20583 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20583 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20326 20583 150 - . alignment_id 1 ; Query gi|805795905|ref|XP_012143137.1| ; Align 20584 166 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 157 -> 253 Target range: 18090 -> 17802 158 : SerGlnMetGlyThrLeuTyrArgSerSerLeuTrpIlePheValSerLeuPheLeuCys : 177 :!! :!:! ! !:!!!:!! ! !!:! !!::|||! ! !! !||||||:!! AlaThrLeuAspArgIlePheProValAsnAlaTyrIleCysSerPheLeuPheIleGln 18090 : GCAACTCTCGATCGGATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAA : 18033 178 : IleProLeuSerSerPheAlaLeuAspIleIleValProLeuAsnGluSerArgProArg : 197 :!:|||! !|||!!! !:!!:!! ! ! !!! !||| !!!!! ! ! ! ValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeu 18032 : GTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTG : 17973 198 : ValSerLeuPheLysLeuAsnTyrIleMetAspMetGluAspHisPheTyrIleValTyr : 217 !! !:!!.!. ! !!|||.!!:!:||| ! !!!::!!!:!||| !:!! GlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIle 17972 : CAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATA : 17913 218 : LeuHisSerAlaCysCysAlaLeuAsnValValLeuIleValThrThrMetAspSerLeu : 237 ||||||.!!.!!||| !|||! !||||||:!!:!: ! !.!! |||!!! ! LeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCysAspThrSer 17912 : CTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGT : 17853 238 : TyrMetValIleIleHisTyrSerCysGlyLeuPheAlaLeuCysGly : 253 |||||||||:!::!:!!.:!!!!!|||||||||||||||:!!..!||| TyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly 17852 : TACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 17803 vulgar: gi|805795905|ref|XP_012143137.1| 157 253 . KQ414772.1 18090 17802 - 121 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17803 18090 121 - . gene_id 2 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17803 18090 . - . KQ414772.1 exonerate:protein2genome:local exon 17803 18090 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17803 18090 121 - . alignment_id 2 ; Query gi|805795905|ref|XP_012143137.1| ; Align 18091 158 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 166 -> 242 Target range: 45964 -> 45736 167 : SerLeuTrpIlePheValSerLeuPheLeuCysIleProLeuSerSerPheAlaLeuAsp : 186 !!!:!!!::||| ||||||:!!|||! ! ! ||||||! ! !!||| !|||||| ThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeuAsp 45964 : ACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTGGAC : 45907 187 : IleIleValProLeuAsnGluSerArgProArgValSerLeuPheLysLeuAsnTyrIle : 206 :!!||| !||||||||||||||||||||||||:!!! ! !!:!||| ! !!! ! ! LeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyrCysTyr 45906 : CTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTACTGTTAC : 45847 207 : MetAspMetGluAspHisPheTyrIleValTyrLeuHisSerAlaCysCysAlaLeuAsn : 226 .!.:!! !!!:|||:!!!:!||| !||| !:!!!!!::!...||| ! !! PheAsnProAspAspTyrTyrTyrTyrValValGlyTyrThrSerAlaCysIleGlyMet 45846 : TTCAATCCGGACGACTACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATAGGAATG : 45787 227 : ValValLeuIleValThrThrMetAspSerLeuTyrMetValIleIle : 242 !.!! !|||:!::!!..! ! |||! !:!! !!: !:!!:!! AlaGlyLeuValLeuValGlyAlaAspIleIleMetIleHisLeuVal 45786 : GCCGGACTCGTGCTTGTCGGCGCTGACATTATTATGATACATCTTGTA : 45737 vulgar: gi|805795905|ref|XP_012143137.1| 166 242 . KQ414772.1 45964 45736 - 120 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45737 45964 120 - . gene_id 3 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45737 45964 . - . KQ414772.1 exonerate:protein2genome:local exon 45737 45964 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45737 45964 120 - . alignment_id 3 ; Query gi|805795905|ref|XP_012143137.1| ; Align 45965 167 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 363 -> 424 Target range: 19643 -> 19375 364 : LeuIleAspAlaIleTyrSerSerLysTrpTyrGlnThrProIleLysPheGlnArgVal : 383 |||:!! !..!! !|||..!|||:!!||||||.!. ! !! !!:! ||| !:!! LeuValLeuCysArgTyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeu 19643 : CTGGTCCTTTGCAGATACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTG : 19586 384 : LeuGluIleMetGlnIleArgCysSerArgProCysLysLeuThrAlaGlyGlyLeuTyr : 403 ! !! !:!: !! !!!!||| !!.!||| ! !|||||||||||||||:!! TyrValLeuAlaLeuArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThr 19585 : TATGTATTGGCATTGAGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACG : 19526 404 : GluMetAsnIleGluAsnPheGlySer >>>> Target Intron 1 >>>> MetI : 414 !:!!|||:!!..!:::|||!.!..! 85 bp !!:| ThrLeuAsnLeuArgSerPheAlaGlu++ ++IleI 19525 : ACGTTGAATCTACGATCGTTCGCAGAGgt.........................agATCA : 19408 415 : leLysThrCysValSerTyrPheThrValLeu : 424 |||||.!!! !|||||||||!:!||||||:!! leLysAlaSerValSerTyrTyrThrValMet 19407 : TCAAAGCATCTGTTTCCTACTACACGGTGATG : 19376 vulgar: gi|805795905|ref|XP_012143137.1| 363 424 . KQ414772.1 19643 19375 - 102 M 49 147 5 0 2 I 0 81 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 19376 19643 102 - . gene_id 4 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 19497 19643 . - . KQ414772.1 exonerate:protein2genome:local exon 19497 19643 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 19495 19496 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 19412 19496 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 19412 19413 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 19376 19411 . - . KQ414772.1 exonerate:protein2genome:local exon 19376 19411 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 19376 19643 102 - . alignment_id 4 ; Query gi|805795905|ref|XP_012143137.1| ; Align 19644 364 147 ; Align 19412 413 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 368 -> 424 Target range: 45002 -> 44736 369 : TyrSerSerLysTrpTyrGlnThrProIleLysPheGlnArgValLeuGluIleMetGln : 388 |||..!:!!! ||||||:!!! !||| !|||.!!||| !:!! !! :!! !! TyrGluAlaIleTrpTyrLysMetProProLysLeuGlnLeuLeuAspValValAlaLeu 45002 : TACGAGGCAATTTGGTATAAGATGCCACCTAAACTTCAGTTGCTAGACGTTGTAGCGCTT : 44945 389 : IleArgCysSerArgProCysLysLeuThrAlaGlyGlyLeuTyrGluMetAsnIleGlu : 408 ! !!:! !! !! !||| !! !|||||||||||||||||| ..!:!::!!:!:.!. ArgLysSerLeuThrProProIleLeuThrAlaGlyGlyLeuMetArgLeuAspLeuAsn 44944 : AGAAAAAGCCTAACTCCTCCTATACTGACGGCGGGAGGGTTGATGCGGTTAGATTTGAAT : 44885 409 : AsnPheGlySer >>>> Target Intron 1 >>>> MetIleLysThrCysValS : 419 ::!|||!.!..! 98 bp ::::!:|||.!!||||||| SerPheAlaGln++ ++LeuLeuLysAlaCysValS 44884 : TCTTTCGCACAGgt.........................agctgCTGAAAGCTTGCGTCT : 44754 420 : erTyrPheThrValLeu : 424 |||||!:!|||!.!||| erTyrTyrThrAlaLeu 44753 : CGTATTATACGGCACTG : 44737 vulgar: gi|805795905|ref|XP_012143137.1| 368 424 . KQ414772.1 45002 44736 - 101 M 44 132 5 0 2 I 0 94 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 44737 45002 101 - . gene_id 5 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 44871 45002 . - . KQ414772.1 exonerate:protein2genome:local exon 44871 45002 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 44869 44870 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 44773 44870 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 44773 44774 . - . intron_id 0 ; splice_site "ag" KQ414772.1 exonerate:protein2genome:local cds 44737 44772 . - . KQ414772.1 exonerate:protein2genome:local exon 44737 44772 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 44737 45002 101 - . alignment_id 5 ; Query gi|805795905|ref|XP_012143137.1| ; Align 45003 369 132 ; Align 44773 413 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 458 Query range: 128 -> 376 Target range: 20583 -> 19369 129 : AlaSerAlaTyrPheAlaMetMetLeuPheLeuGlnMetProTrpTrpProArgValAla : 148 ||| ! !!:!.!! !! ! :!!|||||| :!!|||!:: |||! !:!! ! AlaHisLeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIleLeu 20583 : GCGCATTTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTG : 20526 149 : AspIleLeuMetProLeuAsnAlaSerArgProArgGlyTyrIlePheProAlaTyrTyr : 168 ||||||! ! !||||||||| !!!!||| !|||! !!:!:!!!:!|||||||||||| AspIleTyrAlaProLeuAsnLysThrArgLysArgValPheValTyrProAlaTyrTyr 20525 : GACATTTACGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTAC : 20466 169 : TyrValAspAspAspLysTyrTyrTyrTrpIleIleAlaTyrSerSerIleAlaThrIle : 188 !:::!!||| !!!::!!|||||| !!:||| !:!!! !! !.!!!.!..!||| TrpMetAspProGluGlnTyrTyrMetIleMetIleIleHisIleMetPheValValIle 20465 : TGGATGGATCCTGAGCAATACTACATGATAATGATAATACACATAATGTTCGTGGTGATC : 20406 189 : IleThrValCysGlyTyrIleAlaCysAspIleTyrPheIleTyrAlaValGlnHisAla : 208 !!:..! ! ! !!:! !|||||||||!!: !!!:!:!:|||||||||||||||||| MetValCysValIlePheCysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAla 20405 : ATGGTCTGTGTCATATTCTGTGCTTGCGACATGAACTACGTGTACGCTGTGCAGCACGCA : 20346 209 : CysGlyLeuPheThrValAla{Gl} >>>> Target Intron 1 >>>> {y}Tyr : 217 |||||||||!!..!!|||.!!{ !} 272 bp {!}||| CysGlyLeuLeuAlaValThr{Ar}++ ++{g}Tyr 20345 : TGCGGCTTATTGGCTGTCACC{AG}gt.........................ag{A}TAT : 20047 218 : AlaLysAlaIleAspAspPheTyrTyrGlyIleLeuPheIleValValGlyMetThrIle : 237 !||| !|||!!:||| !:!! ! ! !||||||||| !:!!|||||| !!!: LeuLysHisIleGluAspSerHisArgIleTyrLeuPheIleSerMetGlyMetLeuMet 20046 : CTGAAACATATCGAGGACAGCCATCGTATTTACCTGTTCATCTCGATGGGAATGCTGATG : 19987 238 : GlyAlaPheSerSerThrLeuPheTrpValSerSerLeuAsnPheIleLeuThrAspAsp : 257 !|||.!!||| !:!!|||!!. |||... ... ! !:!! IleAlaIleSerValSerLeuLeuThrValGluTyrPheLeuValThrValPheLeuIle 19986 : ATAGCTATCAGCGTGTCTTTGTTAAcggtagaatattttttagtcACAGTCTTcttaatt : 19927 258 : SerAsnLeuSerAspAspSerSerLeuLeuTyrIlePheSerLysGlnLeuSerLysMet : 277 ||| ... .!! !! ! ||| !! !!! !!:!!:!!!..! SerLeuPheLeuPheCysTyrGlyGlu***ArgIleValArgIle***MetAlaSerSer 19926 : tctctctttcttttttgttacgGTGAGTGACGAATCGTTCGAATTTAGATGGCCAGTAGC : 19867 278 : LysProCysAlaGlnPheTyrGluTyrIleValPheLeuThrIleGlnLeuLeuHisIle : 297 ! !! !!||| !! !:!! !..!|||!!!..! !||| !!!!|||:!! HisAsnLeuProGlnLysValValHisGlyThrPhePheValGlyGlnAlaPheHisVal 19866 : CACAATTTACCGCAGAAGGTTGTGCACGGAACGTTTTTCGTCGGCCAAGCGTTTCACGTT : 19807 298 : PhePheLeuAlaIleGlnGlyGlnPheMetIleAsnArgThrAspIleValTyrAsnGln : 317 ||||||||| !:!!||||||||||||:!!|||||| ! !||| !:!!|||:!!:!! PhePheLeuAsnValGlnGlyGlnPheValIleAsnAlaPheAspGluLeuTyrAspLys 19806 : TTCTTTTTGAACGTCCAGGGACAATTTGTGATAAACGCATTCGACGAACTGTACGACAAG : 19747 318 : {Il} >>>> Target Intron 2 >>>> {e}TyrGluGlyGlnTrpTyrAsnSer : 326 {||} 113 bp {|}||||||..!||||||||||||! ! {Il}++ ++{e}TyrGluSerGlnTrpTyrAsnPhe 19746 : {AT}gt.........................ag{A}TACGAATCGCAGTGGTATAATTTC : 19607 327 : ValProLysThrGlnGluLeuPheIleLeuAlaLeuArgThrAlaMetAsnProProGln : 346 ..!|||!:!||||||! !|||!:!:!!||||||||||||!:!..!:!:|||||||||! ! ThrProArgThrGlnAlaLeuTyrValLeuAlaLeuArgSerCysLeuAsnProProLeu 19606 : ACTCCTAGAACACAAGCGTTGTATGTATTGGCATTGAGAAGCTGCCTAAACCCACCTCTG : 19547 347 : IleThrAlaGlyGlyValIleAlaMetAsnLeuGlnThrPheAlaGlu >>>> Targe : 363 :!!||||||||||||:!!! .!!:!!||||||!:!:!!||||||||| LeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSerPheAlaGlu++ 19546 : TTAACAGCTGGTGGGATGACGACGTTGAATCTACGATCGTTCGCAGAGgt.......... : 19494 364 : t Intron 3 >>>> ValValLysValSerPheSerTyrTyrThrValLeuGlnThr : 376 85 bp :!!:!!|||!.!||| !!|||||||||||||||:!!|||||| ++IleIleLysAlaSerValSerTyrTyrThrValMetGlnThr 19493 : ...............agATCATCAAAGCATCTGTTTCCTACTACACGGTGATGCAGACC : 19370 vulgar: gi|805793799|ref|XP_012142565.1| 128 376 . KQ414772.1 20583 19369 - 458 M 87 261 S 0 2 5 0 2 I 0 268 3 0 2 S 1 1 M 101 303 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 44 132 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 19370 20583 458 - . gene_id 1 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 20321 20583 . - . KQ414772.1 exonerate:protein2genome:local exon 20321 20583 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 20319 20320 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 20049 20320 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 20049 20050 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 19743 20048 . - . KQ414772.1 exonerate:protein2genome:local exon 19743 20048 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 19741 19742 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 19630 19742 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 19630 19631 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 19497 19629 . - . KQ414772.1 exonerate:protein2genome:local exon 19497 19629 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 19495 19496 . - . intron_id 3 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 19412 19496 . - . intron_id 3 KQ414772.1 exonerate:protein2genome:local splice3 19412 19413 . - . intron_id 2 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 19370 19411 . - . KQ414772.1 exonerate:protein2genome:local exon 19370 19411 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 19370 20583 458 - . alignment_id 1 ; Query gi|805793799|ref|XP_012142565.1| ; Align 20584 129 261 ; Align 20048 217 303 ; Align 19629 319 132 ; Align 19412 363 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 455 Query range: 120 -> 376 Target range: 18090 -> 16522 121 : AlaPheTyrSerSerIleTyrIleAlaSerAlaTyrPheAlaMetMetLeuPheLeuGln : 140 ||| ! !..! !!|||!:! !!.!!:!||||||.!!..! !.!.||||||:!!||| AlaThrLeuAspArgIlePheProValAsnAlaTyrIleCysSerPheLeuPheIleGln 18090 : GCAACTCTCGATCGGATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAA : 18033 141 : MetProTrpTrpProArgValAlaAspIleLeuMetProLeuAsnAlaSerArgProArg : 160 :!!||||||! ! !!|||:!!!.!:!! ! !! ! !!! !||| !!!!! ! ! ! ValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeu 18032 : GTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTG : 17973 161 : GlyTyrIlePheProAlaTyrTyrTyrValAspAspAspLysTyrTyrTyrTrpIleIle : 180 !!:!:!!.!.|||!.!||||||!:!||||||!!:! :!!|||||||||!::|||||| GlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIle 17972 : CAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATA : 17913 181 : AlaTyrSerSerIleAlaThrIleIleThrValCysGlyTyrIleAlaCysAspIleTyr : 200 !:!!.!!!!! !.!!! !:!:|||..!||| ! !||| !|||||||||! ! ! LeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCysAspThrSer 17912 : CTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGT : 17853 201 : PheIleTyrAlaValGlnHisAlaCysGlyLeuPheThrValAla{Gl} >>>> Targ : 216 !:!!!: !|||||||||.!!||||||||||||.!!||||||{||} TyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAla{Gl}++ 17852 : TACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCC{GG}gt......... : 17801 217 : et Intron 1 >>>> {y}TyrAlaLysAlaIleAspAspPheTyrTyrGlyIleLeu : 229 315 bp {|}!:!!.!|||! !|||!!: ! !:!! !! ! !||| ++{y}PheValLysGluIleGluArgGlyHisAspThrTyrLeu 17800 : ................ag{C}TTTGTAAAGGAAATTGAACGCGGCCATGACACGTACCTT : 17451 230 : PheIleValValGlyMetThrIleGlyAlaPheSerSerThrLeuPheTrpValSerSer : 249 |||! ! !:!!|||:!!..!||| !..!||||||! !||||||.!! !|||||| PheThrCysLeuGlyLeuValIleLeuCysPheSerIleThrLeuIleLysValSerPhe 17450 : TTCACCTGCTTAGGCTTGGTGATTCTATGCTTCAGTATTACTCTGATCAAGGTGagcttc : 17391 250 : LeuAsnPheIleLeuThrAspAspSerAsnLeuSerAspAspSerSerLeuLeuTyrIle : 269 ||| ::: !||| !!! !:::! !!!! ... ... ::: LeuPheProLeuSerTyrAspTyrIleSerArgCysLeuIleCysGlyAsnPheSerLeu 17390 : ctttttcctctttcctaCGACTACATTTCGCGTTGTTTAAtctgtggaaatttttcactg : 17331 270 : PheSerLysGlnLeuSerLysMetLysProCysAlaGlnPheTyrGluTyrIleValPhe : 289 ||||||.!.|||||||||! ! ! ! ! ! !.!.||||||..!||| ! !||| PheSerAsnGlnLeuSerThrSerAspPheAspIleAspPheTyrArgTyrCysSerPhe 17330 : ttttcaaATCAGCTGAGTACGTCGGATTTCGACATAGACTTCTACAGATATTGCAGTTTT : 17271 290 : LeuThrIleGlnLeuLeuHisIlePhePheLeuAlaIleGlnGlyGlnPheMetIleAsn : 309 ! ! !||||||:!!|||:!:||| !!:!! !:!!||||||||||||:!!:!::!! ThrLeuCysGlnLeuMetHisLeuPheValIleMetLeuGlnGlyGlnPheValLeuAsp 17270 : ACGTTGTGTCAACTGATGCACCTGTTCGTTATCATGCTTCAGGGACAGTTCGTGCTGGAT : 17211 310 : ArgThrAspIleValTyrAsnGln{Il} >>>> Target Intron 2 >>>> {e} : 318 ! !!!:! !:!!:!!.!. !{||} 402 bp {|} SerCysGluArgIleHisGluAla{Il}++ ++{e} 17210 : TCGTGCGAGAGAATTCACGAGGCG{AT}gt.........................ag{A} : 16780 319 : TyrGluGlyGlnTrpTyrAsnSerValProLysThrGlnGluLeuPheIleLeuAlaLeu : 338 ||||||..! !||||||!..||| ! !!|||||||||! !|||!:!:!::!!|||||| TyrGluSerLeuTrpTyrThrSerSerSerLysThrGlnAlaLeuTyrValValAlaLeu 16779 : TACGAATCATTATGGTACACAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCGTTA : 16722 339 : ArgThrAlaMetAsnProProGlnIleThrAlaGlyGlyValIleAlaMetAsnLeuGln : 358 |||! ! !:!:!..||| !! :!!||||||||||||:!!:!: !:!!|||:!!||| ArgArgAsnLeuThrProThrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMetGln 16721 : CGAAGAAACCTAACACCTACCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATGCAA : 16662 359 : ThrPheAlaGlu >>>> Target Intron 3 >>>> ValValLysValSerPheS : 369 !:!||||||||| 83 bp |||||||||:!!||| !!| SerPheAlaGlu++ ++ValValLysMetSerValS 16661 : AGCTTCGCAGAGgt.........................agGTGGTAAAAATGTCCGTTT : 16546 370 : erTyrTyrThrValLeuGlnThr : 376 |||||||||||||||||:!!||| erTyrTyrThrValLeuLysThr 16545 : CCTATTATACGGTGTTGAAGACA : 16523 vulgar: gi|805793799|ref|XP_012142565.1| 120 376 . KQ414772.1 18090 16522 - 455 M 95 285 S 0 2 5 0 2 I 0 311 3 0 2 S 1 1 M 101 303 S 0 2 5 0 2 I 0 398 3 0 2 S 1 1 M 44 132 5 0 2 I 0 79 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 16523 18090 455 - . gene_id 2 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 17804 18090 . - . KQ414772.1 exonerate:protein2genome:local exon 17804 18090 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 17802 17803 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 17489 17803 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 17489 17490 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 17183 17488 . - . KQ414772.1 exonerate:protein2genome:local exon 17183 17488 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 17181 17182 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 16781 17182 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 16781 16782 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 16648 16780 . - . KQ414772.1 exonerate:protein2genome:local exon 16648 16780 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 16646 16647 . - . intron_id 3 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 16565 16647 . - . intron_id 3 KQ414772.1 exonerate:protein2genome:local splice3 16565 16566 . - . intron_id 2 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 16523 16564 . - . KQ414772.1 exonerate:protein2genome:local exon 16523 16564 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 16523 18090 455 - . alignment_id 2 ; Query gi|805793799|ref|XP_012142565.1| ; Align 18091 121 285 ; Align 17488 217 303 ; Align 16780 319 132 ; Align 16565 363 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 446 Query range: 121 -> 363 Target range: 29640 -> 27981 122 : PheTyrSerSerIleTyrIleAlaSerAlaTyrPheAlaMetMetLeuPheLeuGlnMet : 141 |||:::|||||| ::!! !|||!:!!.! !|||..! :!::!!||| !..!:!! PhePheSerSerArgPheThrAlaAsnGlyIlePheCysTyrValIlePheThrSerVal 29640 : tttttttcttcacgttTCACAGCAAATGGAATCTTCTGCTACGTTATATTCACCTCAGTG : 29583 142 : ProTrpTrpProArgValAlaAspIleLeuMetProLeuAsnAlaSerArgProArgGly : 161 !! ||||||||| !|||:!!:!! !||| !|||! !|||||| ! !||| AlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValGly 29582 : GCGATAACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTGGGC : 29523 162 : TyrIlePheProAlaTyrTyrTyrValAspAspAspLysTyrTyrTyrTrpIleIleAla : 181 !:!|||!:!|||||||||||| !:!!|||!!:!!::!!:!!||||||!:::!:!!:!.! PheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrTyrLeuMetGly 29522 : TTCATTTATCCTGCATACTACGGTCTTGACGAAGAGGAGCATTACTACTATCTGATGGGT : 29463 182 : TyrSerSerIleAlaThrIleIleThrValCysGlyTyrIleAlaCysAspIleTyrPhe : 201 :!!! ! ! !!.!! !! !:!!..! !!! !! !||||||:!!||||||! !!:! HisMetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThrIleTyr 29462 : CACATGCTTTCCGTGATAACCGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATCTAT : 29403 202 : IleTyrAlaValGlnHisAlaCysGlyLeuPheThrValAla{Gl} >>>> Target : 216 !!: !!!.!|||||||||||||||||||||!!.!.!|||:!!{||} 86 MetAsnValValGlnHisAlaCysGlyLeuLeuAsnValSer{Gl}++ 29402 : ATGAATGTCGTGCAACACGCGTGTGGATTATTGAACGTCTCT{GG}gt............ : 29354 217 : Intron 1 >>>> {y}TyrAlaLysAlaIleAspAspPheTyrTyrGlyIleLeuPhe : 230 2 bp {|}||| !! |||:::......::! ! ! !|||||| ++{y}TyrIleThrGluIleGluGlnIleHisGlyThrTyrLeuPhe 29353 : .............ag{T}TATATTAcagaaattgaacaaattcaCGGCACGTACCTCTTC : 28454 231 : IleValValGlyMetThrIleGlyAlaPheSerSerThrLeuPheTrpValSerSerLeu : 250 |||!.!|||||||||! !!!: !:!!||||||! !|||||| !! !!||| |||! ! IleAlaValGlyMetIleMetMetSerPheSerIleThrLeuValArgVal---Ser*** 28453 : ATAGCAGTGGGAATGATTATGATGTCATTCAGTATCACGCTAGTCAGGGTT---AGTTAA : 28397 251 : AsnPheIleLeuThrAspAspSerAsnLeuSerAspAspSerSerLeuLeuTyrIlePhe : 270 :::! |||! ! ! !...!.!!..:!!..! ..!|||||||||! ! ||| Ser***IleTyrGlyLeuSerLysArgIleAspProSerSerSerLeuTyrThrIleGlu 28396 : TCATGAATTTACGGTCTTTCGAAAAGAATCGATCCGAGTTCATCGCTGTATACGATCGAA : 28337 271 : SerLysGlnLeu----SerLysMetLysProCysAlaGlnPheTyrGluTyrIleValPh : 289 !! !:!!|||####|||! !|||!!.||||||!.!:!!||||||:!!||| !! !|| ArgLeuLysLeu####SerMetMetAsnProCysValGluPheTyrLysTyrCysGlyPh 28336 : CGTTTGAAATTAGGTGTCCATGATGAACCCTTGCGTGGAGTTCTACAAGTATTGCGGTTT : 28276 290 : eLeuThrIleGlnLeuLeuHisIlePhePheLeuAlaIleGlnGlyGlnPheMetIleAs : 309 ||||..!:!:||||||:!!|||:!:.!!||||||:!!|||||||||!!.|||:!:||| eLeuValValGlnLeuValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleVa 28275 : CTTGGTGGTGCAACTGGTTCATTTGCTTTTCCTTTCTATCCAGGGACACTTCGTTATAGT : 28216 310 : nArgThrAspIleValTyrAsnGln{Il} >>>> Target Intron 2 >>>> {e : 318 ! ! !|||!!:..!|||:!!.!.{||} 70 bp {| lSerHisAspMetThrTyrAspAsn{Il}++ ++{e 28215 : CTCGCATGACATGACTTACGATAAT{AT}gt.........................ag{A : 28117 319 : }TyrGluGlyGlnTrpTyrAsnSerValProLysThrGlnGluLeuPheIleLeuAlaLe : 338 }! !! !.! !||||||||||||..! !!!:!||||||! |||!:!!!:|||||||| }CysAlaAlaThrTrpTyrAsnSerThrSerArgThrGlnAlaLeuTyrMetLeuAlaLe 28116 : }TGCGCTGCAACATGGTACAACAGTACATCTAGAACGCAAGCTTTGTACATGCTAGCTTT : 28059 339 : uArgThrAlaMetAsnProProGlnIleThrAlaGlyGlyValIleAlaMetAsnLeuGl : 358 ||||! ! !:!!!..||||||! !|||||||||||||||:!!|||:!!:!!||||||:! uArgArgAsnLeuThrProProLeuIleThrAlaGlyGlyLeuIleSerLeuAsnLeuGl 28058 : GAGAAGGAACTTGACACCACCACTGATCACCGCCGGAGGACTGATTTCCTTGAATTTGGA : 27999 359 : nThrPheAlaGluVal : 363 !||||||||||||||| uThrPheAlaGluVal 27998 : GACCTTCGCGGAGGTA : 27982 vulgar: gi|805793799|ref|XP_012142565.1| 121 363 . KQ414772.1 29640 27981 - 446 M 94 282 S 0 2 5 0 2 I 0 858 3 0 2 S 1 1 M 31 93 G 1 0 M 26 78 F 0 4 M 43 129 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 27982 29640 446 - . gene_id 3 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 29357 29640 . - . KQ414772.1 exonerate:protein2genome:local exon 29357 29640 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 29355 29356 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 28495 29356 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 28495 28496 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 28188 28494 . - . KQ414772.1 exonerate:protein2genome:local exon 28188 28494 . - . insertions 0 ; deletions 1 ; frameshifts 4 KQ414772.1 exonerate:protein2genome:local splice5 28186 28187 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 28118 28187 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 28118 28119 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 27982 28117 . - . KQ414772.1 exonerate:protein2genome:local exon 27982 28117 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 27982 29640 446 - . alignment_id 3 ; Query gi|805793799|ref|XP_012142565.1| ; Align 29641 122 282 ; Align 28494 217 93 ; Align 28401 249 78 ; Align 28319 275 129 ; Align 28117 319 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 282 Query range: 274 -> 363 Target range: 37308 -> 36908 275 : SerLysMetLysProCysAlaGlnPheTyrGluTyrIleValPheLeuThrIleGlnLeu : 294 |||! !||| ! |||||| !:!!||||||:!!||| !!.!||||||..!:!:|||||| SerMetMetAspProCysMetGluPheTyrLysTyrCysAlaPheLeuValValGlnLeu 37308 : TCCATGATGGACCCTTGCATGGAGTTCTACAAGTATTGCGCTTTCTTGGTGGTGCAACTG : 37251 295 : LeuHisIlePhePheLeuAlaIleGlnGlyGlnPheMetIleAsnArgThrAspIleVal : 314 :!!|||:!:.!!||||||:!!|||||||||!!.|||:!:||| ! ! !|||!!:..! ValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleLeuSerHisAspMetThr 37250 : GTTCATTTGCTTTTCCTTTCTATCCAGGGACACTTTGTTATACTCTCGCATGACATGACT : 37191 315 : TyrAsnGln{Il} >>>> Target Intron 1 >>>> {e}TyrGluGlyGlnTrp : 323 |||:!!.!.{||} 133 bp {|}|||...!.!:!!||| TyrAspAsn{Il}++ ++{e}TyrSerAlaLysTrp 37190 : TACGACAAC{AT}gt.........................ag{A}TATAGCGCAAAATGG : 37031 324 : TyrAsnSerValProLysThrGlnGluLeuPheIleLeuAlaLeuArgThrAlaMetAsn : 343 ||||||||| !|||!:!|||||| |||!:!:!:||||||||||||! !::!:!!!.! TyrAsnSerSerProArgThrGlnThrLeuTyrValLeuAlaLeuArgArgSerLeuThr 37030 : TACAACAGTTCGCCGAGAACGCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACT : 36971 344 : ProProGlnIleThrAlaGlyGlyValIleAlaMetAsnLeuGlnThrPheAlaGluVal : 363 |||||| !:!!||||||||||||:!!|||:!!:!!||||||:!!||||||||||||||| ProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGluVal 36970 : CCGCCATTGCTCACTGCGGGAGGACTGATTTCCTTGAATTTGGAGACTTTTGCCGaggta : 36911 vulgar: gi|805793799|ref|XP_012142565.1| 274 363 . KQ414772.1 37308 36908 - 282 M 43 129 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 36909 37308 282 - . gene_id 4 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 37178 37308 . - . KQ414772.1 exonerate:protein2genome:local exon 37178 37308 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 37176 37177 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 37045 37177 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 37045 37046 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 36909 37044 . - . KQ414772.1 exonerate:protein2genome:local exon 36909 37044 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 36909 37308 282 - . alignment_id 4 ; Query gi|805793799|ref|XP_012142565.1| ; Align 37309 275 129 ; Align 37044 319 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 282 Query range: 274 -> 363 Target range: 35874 -> 35474 275 : SerLysMetLysProCysAlaGlnPheTyrGluTyrIleValPheLeuThrIleGlnLeu : 294 |||! !||| ! |||||| !:!!||||||:!!||| !!.!||||||..!:!:|||||| SerMetMetAspProCysMetGluPheTyrLysTyrCysAlaPheLeuValValGlnLeu 35874 : TCCATGATGGACCCTTGCATGGAGTTCTACAAGTATTGCGCTTTCTTGGTGGTGCAACTG : 35817 295 : LeuHisIlePhePheLeuAlaIleGlnGlyGlnPheMetIleAsnArgThrAspIleVal : 314 :!!|||:!:.!!||||||:!!|||||||||!!.|||:!:||| ! ! !|||!!:..! ValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleLeuSerHisAspMetThr 35816 : GTTCATTTGCTTTTCCTTTCTATCCAGGGACACTTTGTTATACTCTCGCATGACATGACT : 35757 315 : TyrAsnGln{Il} >>>> Target Intron 1 >>>> {e}TyrGluGlyGlnTrp : 323 |||:!!.!.{||} 133 bp {|}|||...!.!:!!||| TyrAspAsn{Il}++ ++{e}TyrSerAlaLysTrp 35756 : TACGACAAC{AT}gt.........................ag{A}TATAGCGCAAAATGG : 35597 324 : TyrAsnSerValProLysThrGlnGluLeuPheIleLeuAlaLeuArgThrAlaMetAsn : 343 ||||||||| !|||!:!|||||| |||!:!:!:||||||||||||! !::!:!!!.! TyrAsnSerSerProArgThrGlnThrLeuTyrValLeuAlaLeuArgArgSerLeuThr 35596 : TACAACAGTTCGCCGAGAACGCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACT : 35537 344 : ProProGlnIleThrAlaGlyGlyValIleAlaMetAsnLeuGlnThrPheAlaGluVal : 363 |||||| !:!!||||||||||||:!!|||:!!:!!||||||:!!||||||||||||||| ProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGluVal 35536 : CCGCCATTGCTCACTGCGGGAGGACTGATTTCCTTGAATTTGGAGACTTTTGCCGAGGTA : 35477 vulgar: gi|805793799|ref|XP_012142565.1| 274 363 . KQ414772.1 35874 35474 - 282 M 43 129 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 35475 35874 282 - . gene_id 5 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 35744 35874 . - . KQ414772.1 exonerate:protein2genome:local exon 35744 35874 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 35742 35743 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 35611 35743 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 35611 35612 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 35475 35610 . - . KQ414772.1 exonerate:protein2genome:local exon 35475 35610 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 35475 35874 282 - . alignment_id 5 ; Query gi|805793799|ref|XP_012142565.1| ; Align 35875 275 129 ; Align 35610 319 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 261 Query range: 271 -> 363 Target range: 41638 -> 41245 272 : LysGlnLeuSerLysMetLysProCysAlaGlnPheTyrGluTyrIleValPheLeuThr : 291 !!.:!! !|||! !||| ! ||||||!.!:!!||||||:!! !! !|||||||||..! AsnLysAlaSerMetMetAspProCysValGluPheTyrLysAspCysValPheLeuVal 41638 : AATAAGGCGTCCATGATGGACCCTTGCGTGGAGTTCTACAAAGATTGCGTATTCTTGGTG : 41581 292 : IleGlnLeuLeuHisIlePhePheLeuAlaIleGlnGlyGlnPheMetIleAsnArgThr : 311 :!:||||||:!!|||:!:.!!||||||||||||||||||!!.|||:!:! ! ! ! ValGlnLeuValHisLeuLeuPheLeuAlaIleGlnGlyHisPheValThrValSerHis 41580 : GTGCAGCTCGTTCATTTGCTTTTCCTTGCCATACAGGGACACTTCGTTACAGTCTCGCat : 41521 312 : AspIleValTyrAsnGln{Il} >>>> Target Intron 1 >>>> {e}TyrGlu : 320 ||| ||||||:::...{!!} 117 bp {:}|||!!: AspGlnValTyrAspSer{Me}++ ++{t}TyrAsp 41520 : gaccaggtttacgatagt{AT}gt.........................ag{G}TACGAT : 41377 321 : GlyGlnTrpTyrAsnSerValProLysThrGlnGluLeuPheIleLeuAlaLeuArgThr : 340 !.! !||||||||||||..!|||!:!|||||| |||!:!!!:||||||||||||! ! AlaValTrpTyrAsnSerThrProArgThrGlnThrLeuTyrMetLeuAlaLeuArgArg 41376 : GCAGTATGGTACAACAGTACGCCAAGAACGCAAACTTTGTACATGCTAGCTTTGAGGAGG : 41317 341 : AlaMetAsnProProGlnIleThrAlaGlyGlyValIleAlaMetAsnLeuGlnThrPhe : 360 .!!:!:!.!||||||! !:!!||||||||||||:::|||::::::||||||:::|||||| ThrLeuThrProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPhe 41316 : ACTTTAACTCCACCACTGCTCACTGCAGGAGGACtgatttcgttgaatttggaaactttt : 41257 361 : AlaGluVal : 363 ::!:!!||| SerLysVal 41256 : tcGAAGGTA : 41246 vulgar: gi|805793799|ref|XP_012142565.1| 271 363 . KQ414772.1 41638 41245 - 261 M 46 138 S 0 2 5 0 2 I 0 113 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 41246 41638 261 - . gene_id 6 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 41499 41638 . - . KQ414772.1 exonerate:protein2genome:local exon 41499 41638 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 41497 41498 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 41382 41498 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 41382 41383 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 41246 41381 . - . KQ414772.1 exonerate:protein2genome:local exon 41246 41381 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 41246 41638 261 - . alignment_id 6 ; Query gi|805793799|ref|XP_012142565.1| ; Align 41639 272 138 ; Align 41381 319 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 221 Query range: 271 -> 363 Target range: 32140 -> 31763 272 : LysGlnLeuSerLysMetLysProCysAlaGlnPheTyrGluTyrIleValPheLeuThr : 291 ...::! !|||! !||| ! ||||||!.!:!!||||||:!! !! ! !||||||..! AsnLysAlaSerMetMetAspProCysValGluPheTyrLysAspCysSerPheLeuVal 32140 : aataaGGCGTCTATGATGGATCCTTGCGTCGAGTTCTACAAGGATTGCAGTTTCCTTGTG : 32083 292 : IleGlnLeuLeuHisIlePhePheLeuAlaIleGlnGlyGlnPheMetIleAsnArgThr : 311 :!:||||||:!!|||:!:.!!||||||:!!|||||||||!!.|||:!:||| ! ! ! ValGlnLeuValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleValSerHis 32082 : GTGCAGCTGGTTCATTTGCTTTTCCTTTCCATCCAGGGACACTTCGTTATAGTCTCGCAT : 32023 312 : AspIleValTyrAsn{G} >>>> Target Intron 1 >>>> {ln}IleTyrGlu : 320 ||| ||||||:!!{.} 101 bp {..}! !|||... AspGlnValTyrAsp{S}++ --{er}ArgTyrSer 32022 : GATCAGGTTTACGAT{A}gt.........................tc{GC}AGATACAGT : 31895 321 : GlyGlnTrpTyrAsnSerValProLysThrGlnGluLeuPheIleLeuAlaLeuArgThr : 340 !.! !||||||!!.|||..!|||!:!|||||| |||!:! ||||||||||||! ! AlaThrTrpTyrLysSerThrProArgThrGlnThrLeuTyrGlyLeuAlaLeuArgArg 31894 : GCAACGTGGTACAAGAGTACGCCGAGAACGCAAACTTTGTACGGGCTAGCTTTGAGAAGA : 31835 341 : AlaMetAsnProProGlnIleThrAlaGlyGlyValIleAlaMetAsnLeuGlnThrPhe : 360 !.!:!!!.!|||||| !:!!||||||||||||:!!|||:!!:!!||||||:!!|||||| GlyLeuThrProProValLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPhe 31834 : GGCTTGACTCCACCGGTGCTCACAGCTGGAGGATTGATTTCGTTGAATCTGGAGACTTTT : 31775 361 : AlaGluVal : 363 ||||||||| AlaGluVal 31774 : GCTGAGGTG : 31764 vulgar: gi|805793799|ref|XP_012142565.1| 271 363 . KQ414772.1 32140 31763 - 221 M 45 135 S 0 1 5 0 2 I 0 97 3 0 2 S 1 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 31764 32140 221 - . gene_id 7 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 32005 32140 . - . KQ414772.1 exonerate:protein2genome:local exon 32005 32140 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 32003 32004 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 31904 32004 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 31904 31905 . - . intron_id 0 ; splice_site "TC" KQ414772.1 exonerate:protein2genome:local cds 31764 31903 . - . KQ414772.1 exonerate:protein2genome:local exon 31764 31903 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 31764 32140 221 - . alignment_id 7 ; Query gi|805793799|ref|XP_012142565.1| ; Align 32141 272 135 ; Align 31902 318 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 213 Query range: 123 -> 216 Target range: 42751 -> 42472 124 : SerSerIleTyrIleAlaSerAlaTyrPheAlaMetMetLeuPheLeuGlnMetProTrp : 143 ||| |||::: ..!!!!!.! ! !..!.!.! :!!|||:!!... !|||!:: SerPheIlePheThrValThrGlyIleCysCysPheThrMetPheIleSerAlaProTyr 42751 : tctttcattttcacagTAACTGGAATATGTTGCTTCACAATGTTTATCTCTGCGCCTTAT : 42694 144 : TrpProArgValAlaAspIleLeuMetProLeuAsnAlaSerArgProArgGlyTyrIle : 163 |||!.!||| !|||:!!:!!:!: !! !|||! !|||||| ! !|||!:!||| IleProHisValTyrAspValMetLeuSerLysAsnGluSerArgLysLeuGlyPheIle 42693 : ATACCGCATGTATATGATGTTATGTTATCGAAAAACGAGTCACGAAAGTTGGGTTTCATT : 42634 164 : PheProAlaTyrTyrTyrValAspAspAspLysTyrTyrTyrTrpIleIleAlaTyrSer : 183 !:!|||||||||||| !||||||.!.|||||||||||||||!::|||||||||:!!! ! TyrProAlaTyrTyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAlaHisMet 42633 : TACCCTGCCTATTATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCTCACATG : 42574 184 : SerIleAlaThrIleIleThrValCysGlyTyrIleAlaCysAspIleTyrPheIleTyr : 203 !!! !!.! !:!!:!:..! !!! ! !!:!|||:!!||||||! !!:!!!: !! ThrSerGlyGlyLeuValValPhePheThrPheIleSerCysAspThrIleTyrMetAsn 42573 : ACATCTGGGGGCTTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTACATGAAT : 42514 204 : AlaValGlnHisAlaCysGlyLeuPheThrValAlaGly : 216 !|||||||||||||||||||||!!. !:!!:!!||| IleValGlnHisAlaCysGlyLeuLeuLeuIleSerGly 42513 : ATCGTGCAACACGCGTGCGGATTGTTGTTGATTTCTGGG : 42473 vulgar: gi|805793799|ref|XP_012142565.1| 123 216 . KQ414772.1 42751 42472 - 213 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42473 42751 213 - . gene_id 8 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42473 42751 . - . KQ414772.1 exonerate:protein2genome:local exon 42473 42751 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42473 42751 213 - . alignment_id 8 ; Query gi|805793799|ref|XP_012142565.1| ; Align 42752 124 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 212 Query range: 127 -> 216 Target range: 14160 -> 13893 128 : IleAlaSerAlaTyrPheAlaMetMetLeuPheLeuGlnMetProTrpTrpProArgVal : 147 |||!.!!:!||| ! !!..!:!:!!:||||||:!! ! !||| ! |||!.!:!! IleValAsnAlaIleValCysValIleLeuPheValThrThrProValThrProHisIle 14160 : ATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATT : 14103 148 : AlaAspIleLeuMetProLeuAsnAlaSerArgProArgGlyTyrIlePheProAlaTyr : 167 !|||||||||:!:||| !|||! !|||||| ! !!.!||||||!:!||||||||| LeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyr 14102 : TTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTAT : 14043 168 : TyrTyrValAspAspAspLysTyrTyrTyrTrpIleIleAlaTyrSerSerIleAlaThr : 187 |||!:!..!|||!!: !!|||||| !! !::||||||.!!:!!! !:!! !!.!! ! TyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIle 14042 : TATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATC : 13983 188 : IleIleThrValCysGlyTyrIleAlaCysAspIleTyrPheIleTyrAlaValGlnHis : 207 :!!:!:..! !!! !! !|||:!!|||||||||! ! !!:!||||||!.!||||||||| LeuValValPheTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHis 13982 : CTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACAC : 13923 208 : AlaCysGlyLeuPheThrValAlaGly : 216 !.!|||||||||!!..!!|||:!!||| GlyCysGlyLeuLeuAlaValSerGly 13922 : GGCTGCGGATTGTTGGCCGTGTCCGGg : 13894 vulgar: gi|805793799|ref|XP_012142565.1| 127 216 . KQ414772.1 14160 13893 - 212 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13894 14160 212 - . gene_id 9 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13894 14160 . - . KQ414772.1 exonerate:protein2genome:local exon 13894 14160 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13894 14160 212 - . alignment_id 9 ; Query gi|805793799|ref|XP_012142565.1| ; Align 14161 128 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 195 Query range: 122 -> 247 Target range: 33694 -> 32211 123 : TyrSerSerIleTyrIleAlaSerAlaTyrPheAlaMetMetLeuPheLeuGlnMetPro : 142 :::|||||| ::: |||!:!!.! |||..! !!::!!||| !..! !||| PheSerSerAsnPheThrAlaAsnGlyValPheCysTyrIleMetPheSerSerAlaPro 33694 : ttttcttcaaatttcacagCAAACGGAGTGTTTTGCTACATCATGTTCAGCTCGGCGCCT : 33637 143 : TrpTrpProArgValAlaAspIleLeuMetProLeuAsnAlaSerArgProArgGlyTyr : 162 !:: |||!.! !! !|||:!! !:!! !! !|||! !|||||| ! !.!!! PheIleProHisPheIleAspValAlaLeuSerLysAsnGluSerArgLysLeuSerLeu 33636 : TTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAACGAGTCACGAAAATTAAGTTTG : 33577 163 : IlePheProAlaTyrTyrTyrValAspAspAspLysTyrTyrTyrTrpIleIleAlaTyr : 182 !!:!:!|||||||||||| !:!!|||.!.|||||||||||||||:::::::::|||:!! MetTyrProAlaTyrTyrGlyIleAspGlnAspLysTyrTyrTyrTyrLeuMetAlaHis 33576 : ATGTACCCTGCCTATTACGGCATTGACCAGGacaagtattattattatctaatgGCTCAC : 33517 183 : SerSerIleAlaThrIleIleThrValCysGlyTyrIleAlaCysAspIleTyrPheIle : 202 ! !! !! !||| ! ! ..! !!! !! !!:!!!::!!||||||! !!:!!!: MetMetSerAlaGlyAlaAlaValPhePheValPheMetSerCysAspThrIleTyrMet 33516 : ATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATGTCCTGCGACACGATTTATATG : 33457 203 : TyrAlaValGlnHisAlaCysGlyLeuPheThrValAlaGlyTyrAlaLysAla >>>> : 221 !! !|||||||||||||||||||||!!. !:!!:!!|||!! !!!. ! AsnIleValGlnHisAlaCysGlyLeuLeuPheIleSerGly***LysAsn***-- 33456 : AATATCGTTCAACACGCGTGCGGATTGTTGTTCATTTCCGGGTAAAAGAATTAGca.... : 33398 222 : Target Intron 1 >>>> IleAspAspPheTyrTyrGlyIleLeuPheIleValV : 233 1108 bp |||!!:! .!.:!!:!! ! !||||||||||||| ++IleGluAlaMetHisHisThrTyrLeuPheIleValV 33397 : .....................agATCGAAGCAATGCACCATACATACCTGTTCATAGTAG : 32256 234 : alGlyMetThrIleGlyAlaPheSerSerThrLeuPheTrpVal : 247 ||||||||..!!!: !|||||||||! !||||||.!. !!||| alGlyMetValMetPheAlaPheSerIleThrLeuLeuArgVal 32255 : TGGGAATGGTTATGTTCGCCTTCAGTATCACGCTGCTAAGGGTT : 32212 vulgar: gi|805793799|ref|XP_012142565.1| 122 247 . KQ414772.1 33694 32211 - 195 M 98 294 5 0 2 I 0 1104 3 0 2 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 32212 33694 195 - . gene_id 10 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 33401 33694 . - . KQ414772.1 exonerate:protein2genome:local exon 33401 33694 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 33399 33400 . - . intron_id 1 ; splice_site "CA" KQ414772.1 exonerate:protein2genome:local intron 32293 33400 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 32293 32294 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 32212 32292 . - . KQ414772.1 exonerate:protein2genome:local exon 32212 32292 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 32212 33694 195 - . alignment_id 10 ; Query gi|805793799|ref|XP_012142565.1| ; Align 33695 123 294 ; Align 32293 221 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 187 Query range: 122 -> 216 Target range: 24461 -> 24176 123 : TyrSerSerIleTyrIle<->AlaSerAlaTyrPheAlaMetMetLeuPheLeuGlnMet : 141 :::||||||:::|||:!! |||!:!!.! !|||..! :!:|||||| ! !:!! PheSerSerLeuTyrValAlaAlaAsnGlyIlePheCysTyrValLeuPheThrAlaVal 24461 : ttttcttctctataTGTCGCAGCAAATGGAATCTTCTGCTACGTTCTCTTCACCGCAGTG : 24404 142 : ProTrpTrpProArgValAlaAspIleLeuMetProLeuAsnAlaSerArgProArgGly : 161 !! ||||||||| !|||:!!:!! !||| !|||! !|||||| ! !||| AlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValGly 24403 : GCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTGGGC : 24344 162 : TyrIlePheProAlaTyrTyrTyrValAspAspAspLysTyrTyrTyrTrpIleIleAla : 181 !:!|||!:!|||||| !!||| !||||||!!:!!::!!:!!||||||!:::!:!!:!.! PheIleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyrTyrTyrLeuMetGly 24343 : TTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTACTACTATCTGATGGGT : 24284 182 : TyrSerSerIleAlaThrIleIleThrValCysGlyTyrIleAlaCysAspIleTyrPhe : 201 :!!! ! ! !!.!! !! !:!!..! !!! !! !||||||:!!||||||! !!:! HisMetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThrIleTyr 24283 : CACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATCTAC : 24224 202 : IleTyrAlaValGlnHisAlaCysGlyLeuPheThrValAlaGly : 216 !!: !! !|||||||||||||||||||||!!.!.!:!!:!!||| MetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSerGly 24223 : ATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCTGGG : 24177 vulgar: gi|805793799|ref|XP_012142565.1| 122 216 . KQ414772.1 24461 24176 - 187 M 6 18 G 0 3 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24177 24461 187 - . gene_id 11 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24177 24461 . - . KQ414772.1 exonerate:protein2genome:local exon 24177 24461 . - . insertions 3 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 24177 24461 187 - . alignment_id 11 ; Query gi|805793799|ref|XP_012142565.1| ; Align 24462 123 18 ; Align 24441 129 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 178 Query range: 123 -> 216 Target range: 38048 -> 37769 124 : SerSerIleTyrIleAlaSerAlaTyrPheAlaMetMetLeuPheLeuGlnMetProTrp : 143 ||| ! !!:!! !!.!!:!!.! |||..! :!::!!||| !..!:!! !! SerLeuTyrPheThrValAsnGlyLeuPheCysTyrValIlePheThrSerValAlaIle 38048 : TCTCTGTATTTCACAGTAAACGGACTGTTTTGCTACGTTATATTCACCTCAGTGGCGATT : 37991 144 : TrpProArgValAlaAspIleLeuMetProLeuAsnAlaSerArgProArgGlyTyrIle : 163 !||||||||| !|||:!!:!! ||| !|||! !|||||| ! !! !!:!||| ThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValAspPheIle 37990 : ACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTCATT : 37931 164 : PheProAlaTyrTyrTyrValAspAspAspLysTyrTyrTyrTrpIleIleAlaTyrSer : 183 !:!|||||||||||| !:!!|||!!:!!::!!:!!|||||| :!:!!:!.!:!!! ! TyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHisMet 37930 : TATCCTGCATACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCACATG : 37871 184 : SerIleAlaThrIleIleThrValCysGlyTyrIleAlaCysAspIleTyrPheIleTyr : 203 ! !!.!! !! !:!!..! !!! !! !||||||:!!||||||! !!:!!!: ! LeuCysValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMetSer 37870 : CTCTGCGTGATAACTGTAGTGTTTTTCGTGTACATCTCCTGTGACACGATCTACATGAGC : 37811 204 : AlaValGlnHisAlaCysGlyLeuPheThrValAlaGly : 216 !|||||||||||||||||||||.!.!.!|||:!!||| IleValGlnHisAlaCysGlyLeuLeuAsnValSerGly 37810 : ATCGTTCAACACGCGTGCGGATTACTGAACGTCTCTGGG : 37770 vulgar: gi|805793799|ref|XP_012142565.1| 123 216 . KQ414772.1 38048 37769 - 178 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37770 38048 178 - . gene_id 12 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37770 38048 . - . KQ414772.1 exonerate:protein2genome:local exon 37770 38048 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 37770 38048 178 - . alignment_id 12 ; Query gi|805793799|ref|XP_012142565.1| ; Align 38049 124 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 158 Query range: 309 -> 367 Target range: 12670 -> 12496 310 : ArgThrAspIleValTyrAsnGlnIleTyrGluGlyGlnTrpTyrAsnSerValProLys : 329 ::: ! ||||||:!! !...! !|||...!.! !||||||||||||! ! !!:! LysIleLysIleValHisPheSerArgTyrSerAlaLeuTrpTyrAsnSerAspLysArg 12670 : aaaatcaAAATTGTCCATTTTTCTAGATACAGCGCTTTGTGGTATAACAGCGACAAGAGA : 12613 330 : ThrGlnGluLeuPheIleLeuAlaLeuArgThrAlaMetAsnProProGlnIleThrAla : 349 ||||||..!||||||:!!||||||||||||!.!..!:!:::! !!||||||||||||||| ThrGlnSerLeuPheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAla 12612 : ACGCAATCGTTGTTTGTATTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCC : 12553 350 : GlyGlyValIleAlaMetAsnLeuGlnThrPheAlaGluValValLysValSer : 367 ||||||:!!|||.!!||||||||||||!:!|||:!!||||||..!!.. !||| GlyGlyLeuIleThrMetAsnLeuGlnSerPheSerGluValThrSerSerSer 12552 : GGTGGACTAATTACAATGAACTTGCAAAGTTTCTCAGAGGTAACAAGTTCATCG : 12497 vulgar: gi|805793799|ref|XP_012142565.1| 309 367 . KQ414772.1 12670 12496 - 158 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 12497 12670 158 - . gene_id 13 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 12497 12670 . - . KQ414772.1 exonerate:protein2genome:local exon 12497 12670 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 12497 12670 158 - . alignment_id 13 ; Query gi|805793799|ref|XP_012142565.1| ; Align 12671 310 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 215 -> 308 Target range: 23616 -> 23336 216 : GlyTyrAlaLysAlaIleAspAspPheTyrTyrGlyIleLeuPheIleValValGlyMet : 235 .!!||| !! !! !|||!!:.!. !!:!! ! ! !|||||||||!.!||||||||| SerTyrIleThrGluIleGluGlnValHisGlyThrTyrLeuPheIleAlaValGlyMet 23616 : AGTTATATTACAGAAATTGAACAAGTTCATGGCACGTACCTCTTCATAGCAGTGGGAATG : 23559 236 : ThrIleGlyAlaPheSerSerThrLeuPheTrpValSer-SerLeuAsnPheIleLeuTh : 255 ..!!!: !:!!||||||! !|||||| !! !!||||||#!:!! !.!.|||! :!! ValMetMetSerPheSerIleThrLeuValArgValSer#AsnProGluPheThrIlePh 23558 : GTTATGATGTCATTCAGTATCACGTTAGTCAGGGTTAGTTAATCCTGAATTTACGATCTT : 23498 256 : rAspAspSerAsnLeuSerAspAspSerSerLeuLeuTyrIlePheSerLysGlnLeuSe : 275 ! ! ..!::::!! !!! ! !! !!!!!:!!! !!! ! ! !!!!!!!. !!:!!|| eArgLysGluSerIleArgValTyrArgCysIleArg***SerVal***Asn***ValSe 23497 : TCGAAAAGAATCGATCCGAGTTTATCGCTGTATACGATAGAGCGTTTGAAATTAGGTATC : 23438 276 : rLysMetLysProCysAlaGlnPheTyrGluTyrIleValPheLeuThrIleGlnLeuLe : 295 |! !|||!!.||||||!.!:!!||||||:!!||| !! !||||||..!:!:||||||:! rThrMetAsnProCysValGluPheTyrLysTyrGlyGlyPheLeuValValGlnLeuVa 23437 : CACGATGAACCCTTGCGTGGAGTTCTACAAGTATGGTGGTTTCTTGGTGGTGCAACTGGT : 23378 296 : uHisIlePhePheLeuAlaIleGlnGlyGlnPheMetIle : 308 !|||:!:.!!||||||:!!|||||||||!!.|||:!:||| lHisLeuLeuPheLeuSerIleGlnGlyHisPheValIle 23377 : TCATTTGCTTTTCCTTTCTATCCAGGGACACTTCGTTATA : 23337 vulgar: gi|805793799|ref|XP_012142565.1| 215 308 . KQ414772.1 23616 23336 - 116 M 33 99 F 0 1 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 23337 23616 116 - . gene_id 14 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 23337 23616 . - . KQ414772.1 exonerate:protein2genome:local exon 23337 23616 . - . insertions 0 ; deletions 0 ; frameshifts 1 KQ414772.1 exonerate:protein2genome:local similarity 23337 23616 116 - . alignment_id 14 ; Query gi|805793799|ref|XP_012142565.1| ; Align 23617 216 99 ; Align 23517 249 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 0 -> 51 Target range: 15387 -> 15234 1 : MetAspAlaValGluIleGlnGluArgTyrLeuLysIleThrLysArgTyrLeuValLeu : 20 |||||||||:!! :!!:!!!!:||||||:!!|||:!:||||||! !! ! ! !!!! MetAspAlaIleThrLeuGluAspArgTyrIleLysLeuThrLysIleCysAlaHisPhe 15387 : ATGGACGCGATCACTCTAGAGGATCGATACATCAAGTTGACCAAGATATGCGCCCACTTC : 15330 21 : GlyGlyIleTrpProThrGlnLysLysSerAlaGlnTyrIleTyrArgValIleIleTyr : 40 ..!|||.!!|||||| !|||!..||| !:!!:!!|||:!!! |||:!!|||!!:||| SerGlyPheTrpProTrpGlnSerLysLeuSerLysTyrValSerArgIleIleMetTyr 15329 : TCCGGTTTCTGGCCATGGCAGAGCAAACTGTCGAAATACGTATCGCGAATAATAATGTAC : 15270 41 : IleValMetValProThrValLeuAlaGlnLeu : 51 ! !:!!:!: !! !!..!:!!!!!.!!|||:!! SerIleValPheThrValLeuPheThrGlnVal 15269 : AGCATCGTTTTCACGGTTCTCTTCACGCAGGTG : 15235 vulgar: gi|805793799|ref|XP_012142565.1| 0 51 . KQ414772.1 15387 15234 - 112 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 15235 15387 112 - . gene_id 15 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 15235 15387 . - . KQ414772.1 exonerate:protein2genome:local exon 15235 15387 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 15235 15387 112 - . alignment_id 15 ; Query gi|805793799|ref|XP_012142565.1| ; Align 15388 1 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 318 -> 350 Target range: 23236 -> 23140 319 : TyrGluGlyGlnTrpTyrAsnSerValProLysThrGlnGluLeuPheIleLeuAlaLeu : 338 |||...!.! !|||||||||.!!..!||||||..!|||! |||!:!:!:||||||||| TyrSerAlaThrTrpTyrAsnGlyThrProLysValGlnAlaLeuTyrValLeuAlaLeu 23236 : TACAGCGCTACATGGTACAACGGTACACCGAAAGTGCAAGCTTTGTACGTGCTAGCTTTG : 23179 339 : ArgThrAlaMetAsnProProGlnIleThrAlaGly : 350 |||! ! !:!!!.!||||||! !|||||||||||| ArgArgAsnLeuThrProProLeuIleThrAlaGly 23178 : AGAAGGAACTTGACTCCACCGCTGATCACTGCCGGA : 23141 vulgar: gi|805793799|ref|XP_012142565.1| 318 350 . KQ414772.1 23236 23140 - 103 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 23141 23236 103 - . gene_id 16 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 23141 23236 . - . KQ414772.1 exonerate:protein2genome:local exon 23141 23236 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 23141 23236 103 - . alignment_id 16 ; Query gi|805793799|ref|XP_012142565.1| ; Align 23237 319 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805798911|ref|XP_012143985.1| PREDICTED: uncharacterized protein LOC100876205 [Megachile rotundata] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 350 -> 412 Target range: 1345582 -> 1345846 351 : SerLeuTyrSerCysSerTrpTyrSerLeuProAlaAsnValAlaLysAsnIleVa : 369 :!!! !|||! ! !!!:!||||||..!||||||! !!!. !.!!::!::::!!:! AlaCysTyrPheSerAsnTrpTyrAspLeuProAspLysTyrThrArgSerLeuIl 1345583 : GCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAAATACACGCGATCGTTAAT : 1345637 370 : lLeuValIleLeuArgAlaGlnIleProValHisLeuThrAlaGlyLysPhePheV : 388 !!!! !||| !|||:!!|||! ||| !:!!||||||||||||||||||!:!| ePheCysIleAlaArgSerGlnLysProSerTyrLeuThrAlaGlyLysPheTyrV 1345638 : ATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAGCTGGCAAGTTCTACG : 1345694 389 : alValAsnLeuGluThrPheMetSer >>>> Target Intron 1 >>>> I : 397 || !!:::|||||||||||| ! ! 78 bp | alPheSerLeuGluThrPheGlyIle++ ++I 1345695 : TGTTCTCGTTAGAAACATTCGGCATCgt.........................agA : 1345799 398 : leLeuLysThrSerMetSerTyrLeuSerIleLeuArgValMetIle : 412 ||:!!|||.!!||||||:!!|||||||||:!!|||!:! !!!:||| leValLysAlaSerMetAlaTyrLeuSerValLeuLysSerIleIle 1345800 : TAGTAAAAGCGTCGATGGCCTATCTTTCCGTTCTGAAAAGCATTATC : 1345846 vulgar: gi|805798911|ref|XP_012143985.1| 350 412 . KQ414782.1 1345582 1345846 + 145 M 46 138 5 0 2 I 0 74 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345583 1345846 145 + . gene_id 1 ; sequence gi|805798911|ref|XP_012143985.1| ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345583 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345583 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345846 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345846 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345583 1345846 145 + . alignment_id 1 ; Query gi|805798911|ref|XP_012143985.1| ; Align 1345583 351 138 ; Align 1345799 397 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795896|ref|XP_012143135.1| PREDICTED: uncharacterized protein LOC100875381 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 147 Query range: 164 -> 245 Target range: 26231 -> 25988 165 : ValLeuPheValSerIleProLeuSerSerProAlaLeuAspPheIleAlaProLeuAsn : 184 !.!||||||:!!!!!:!:|||!!! !|||||| !||||||.!!:!! !||||||||| AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsn 26231 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAAC : 26174 185 : GluThrArgThrLysLeuProLeuPheLysLeuAsnTyrIleValAspMetArgAspHis : 204 |||||||||.!!::!||| !:!!!:! ! ! !!|||.!!|||||| ! ! ! :!! GluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyr 26173 : GAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATAT : 26114 205 : PheTyrIleValTyrLeuHisSerAlaTrpCysSerLeuIleIleValLeuIleValThr : 224 !|||:!::!! !|||! ! ! !:!!!!::!!:!!! !:!! !! ! HisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCys 26113 : CATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGC : 26054 225 : ThrMetAspSerLeuTyrMetValIleIleHisTyrAlaCysGlyLeuPheAlaLeuCys : 244 .!! |||:!! !|||:!! ! !:!:!!.:!!||||||||||||!!.|||:!!... AlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla 26053 : GCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCA : 25994 245 : Gly : 245 ||| Gly 25993 : GGG : 25989 vulgar: gi|805795896|ref|XP_012143135.1| 164 245 . LHQN01017803.1 26231 25988 - 147 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26231 147 - . gene_id 1 ; sequence gi|805795896|ref|XP_012143135.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26231 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26231 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26231 147 - . alignment_id 1 ; Query gi|805795896|ref|XP_012143135.1| ; Align 26232 165 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795896|ref|XP_012143135.1| PREDICTED: uncharacterized protein LOC100875381 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 163 -> 265 Target range: 14176 -> 13870 164 : LeuValLeuPheValSerIleProLeuSerSerProAlaLeuAspPheIleAlaProLeu : 183 :!!:!!||||||||||||! |||:!!!!! !!! ! !||||||.!!:!! !||| ! ValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProLys 14176 : GTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAG : 14119 184 : AsnGluThrArgThrLysLeuProLeuPheLysLeuAsnTyrIleValAspMetArgAsp : 203 ||||||:!!||| ! ! ! !:!!!:! ! ! !!|||.!!..!||| !!.! ! AsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLys 14118 : AACGAGTCACGAGACGTAGCGTACATTTATCCGGCCTATTATTTCACCGACGAGCATAAG : 14059 204 : HisPheTyrIleValTyrLeuHisSerAlaTrpCysSerLeuIleIleValLeuIleVal : 223 :!! ! !:!! ! !|||! !|||! ! !|||:!::!: !!! !:!: ! TyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyr 14058 : TACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTAC : 13999 224 : ThrThrMetAspSerLeuTyrMetValIleIleHisTyrAlaCysGlyLeuPheAlaLeu : 243 ..!.!! |||!!! !|||!!: !:!!:!:!!.:!!!.!|||||||||!!.|||:!! ValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaVal 13998 : GTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTG : 13939 244 : CysGlyTyrGlnValLysLysAlaThrGluMetValGlyProLysAlaIleProThrIle : 263 ! !||| :::::::::... ..! !:!!..!||| ::! ! !! !||| SerGly***LysIleArgSerAsnAspSer***LeuAsnProPheSerAlaAsnLysIle 13938 : TCCGGgtaaaaaattcgatcgaacgattCGTAGCTCAACCCTTTCAGTGCCAACAAAATC : 13879 264 : AsnThr : 265 :!!||| AspThr 13878 : GATACG : 13871 vulgar: gi|805795896|ref|XP_012143135.1| 163 265 . LHQN01017803.1 14176 13870 - 131 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13871 14176 131 - . gene_id 2 ; sequence gi|805795896|ref|XP_012143135.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13871 14176 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13871 14176 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13871 14176 131 - . alignment_id 2 ; Query gi|805795896|ref|XP_012143135.1| ; Align 14177 164 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795896|ref|XP_012143135.1| PREDICTED: uncharacterized protein LOC100875381 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 165 -> 245 Target range: 18426 -> 18186 166 : LeuPheValSerIleProLeuSerSerProAlaLeuAspPheIleAlaProLeuAsnGlu : 185 ||||||:!!..!:!:|||! !|||!!!! ! !:!!:!!! ! ! !!! !||| ! LeuPheIleGlnValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIle 18426 : TTGTTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATA : 18369 186 : ThrArgThrLysLeuProLeuPheLysLeuAsnTyrIleValAspMetArgAspHisPhe : 205 |||! !!:! !! ! !:!! ! ! !!|||.!!|||||| !!!::!!!:! ThrProSerLeuProValValValProGlyTyrTyrPheValAspGluValGluTyrTyr 18368 : ACGCCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTAT : 18309 206 : TyrIleValTyrLeuHisSerAlaTrpCysSerLeuIleIleValLeuIleValThrThr : 225 ||| !:!! ||||||.!!.!!!! ! !||||||:!!|||:!!:!: ! !.!! TyrTyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAla 18308 : TATTACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCC : 18249 226 : MetAspSerLeuTyrMetValIleIleHisTyrAlaCysGlyLeuPheAlaLeuCysGly : 245 |||!!! !|||||||||:!::!:!!.:!!.!!|||||||||||||||:!!..!||| CysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly 18248 : TGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 18189 vulgar: gi|805795896|ref|XP_012143135.1| 165 245 . LHQN01017803.1 18426 18186 - 125 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18187 18426 125 - . gene_id 3 ; sequence gi|805795896|ref|XP_012143135.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18187 18426 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18187 18426 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18187 18426 125 - . alignment_id 3 ; Query gi|805795896|ref|XP_012143135.1| ; Align 18427 166 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 429 Query range: 127 -> 367 Target range: 14197 -> 12499 128 : IleAlaSerAlaTyrPheAlaMetMetLeuPheLeuGlnMetProTrpTrpProArgVal : 147 ||||||!:!||| ! !!..!:!:!!:||||||:!!..!! !||| ! |||!.!:!! IleAlaAsnAlaIleValCysValIleLeuPheValSerThrProValThrProHisIle 14197 : ATAGCGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATT : 14140 148 : AlaAspIleLeuMetProLeuAsnAlaSerArgProArgGlyTyrIlePheProAlaTyr : 167 !|||||||||:!:||| !|||! !|||||| ! !!.!||||||!:!||||||||| LeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyr 14139 : TTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTATCCGGCCTAT : 14080 168 : TyrTyrValAspAspAspLysTyrTyrTyrTrpIleIleAlaTyrSerSerIleAlaThr : 187 |||!:!..!|||!!: !!|||||| !! !::||||||.!!:!!! !:!! !!.!! ! TyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIle 14079 : TATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATC : 14020 188 : IleIleThrValCysGlyTyrIleAlaCysAspIleTyrPheIleTyrAlaValGlnHis : 207 :!!:!:..! !!! !! !|||:!!|||||||||! ! !!:!||||||!.!||||||||| LeuValValPheTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHis 14019 : CTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACAC : 13960 208 : AlaCysGlyLeuPheThrValAla{Gl} >>>> Target Intron 1 >>>> {y} : 216 !.!|||||||||!!..!!|||:!!{||} 922 bp {|} GlyCysGlyLeuLeuAlaValSer{Gl}++ ++{y} 13959 : GGCTGCGGATTGTTGGCCGTGTCC{GG}gt.........................ag{A} : 13009 217 : TyrAlaLysAlaIleAspAspPheTyrTyrGlyIleLeuPheIleValValGlyMetThr : 236 ||| !!!. !|||!!::!!! !:!! ||| ...|||||| |||! !:!:! ! TyrIleAsnGlnIleGluAsnCysHisAlaGlyTyrPhePheIleCysValValLeuIle 13008 : TACATTAACCAGATCGAAAACTGCCACGCGggctatttttttatttgcgtCGTTCTTATA : 12951 237 : IleGlyAlaPheSerSerThrLeuPheTrpValSerSerLeuAsnPheIleLeuThrAsp : 256 !!: !..!|||||| !! !||| ! !|||||||||! ! !||| ! ! MetIleCysPheSerValIleLeuValLysValSerSerSerValArgGlnLeuTyrArg 12950 : ATGATATGCTTCAGCGTGATACTGGTGAAGGTGAGCTCTTCAGTGCGGCAATTATATCGC : 12891 257 : AspSerAsnLeuSerAspAspSerSerLeuLeuTyrIlePheSerLysGlnLeuSerLys : 276 ! !:!! ! ! ! !! !||| ! ||| !!!!!||||||:!!|||!!. ValAla------IleProLeuIleIleLeuArgThrIleValTrpLysGlnValSerAsn 12890 : GTTGCG------ATACCGCTGATCATCCTCAGAACAATTGTTTGGAAACAGGTGTCGAAC : 12837 277 : MetLysProCysAlaGlnPheTyrGluTyrIleValPheLeuThrIleGlnLeuLeuHis : 296 !:!! ! !|||:!!||| !:!! !! !..!|||:!!..!|||||||||:!!||| SerGluIleAsnAlaGluPheAlaLysAspCysThrPheIleValIleGlnLeuValHis 12836 : TCGGAGATTAACGCGGAGTTTGCCAAGGATTGCACATTTATCGTGATTCAATTGGTACAC : 12777 297 : IlePhePheLeuAlaIleGlnGlyGlnPheMetIleAsnArgThrAspIleValTyrAsn : 316 |||.!!!:!|||.!!:!!||||||||||||:!!|||:!! !!.!!!: !:!!!:!.!. IleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAspAlaAsnGluGluIlePheGlu 12776 : ATACTTTACCTAACTCTTCAAGGACAATTCGTGATCGACGCGAACGAGGAAATCTTCGAA : 12717 317 : Gln{Il} >>>> Target Intron 2 >>>> {e}TyrGluGlyGlnTrpTyrAsn : 325 ..!{||} 62 bp {|}|||.!.!.! !||||||||| Ser{Il}++ ++{e}TyrAsnAlaLeuTrpTyrAsn 12716 : TCG{AT}gt.........................ag{A}TACAACGCTTTGTGGTATAAC : 12628 326 : SerValProLysThrGlnGluLeuPheIleLeuAlaLeuArgThrAlaMetAsnProPro : 345 |||! ! !!:!||||||..!||||||:!!||||||||||||!.!..!:!:::! !!||| SerAspLysArgThrGlnSerLeuPheValLeuAlaLeuArgAsnCysLeuSerAlaPro 12627 : AGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCATTAAGAAATTGTCTATCTGCTCCT : 12568 346 : GlnIleThrAlaGlyGlyValIleAlaMetAsnLeuGlnThrPheAlaGluValValLys : 365 ||||||||||||||||||:!!|||.!!||||||||||||!:!|||:!!||||||..!::: GlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGlnSerPheSerGluValThrArg 12567 : CAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAAAGTTTCTCAGAGGTAACTCGT : 12508 366 : ValSer : 367 !||| SerSer 12507 : TCATCG : 12500 vulgar: gi|805793799|ref|XP_012142565.1| 127 367 . LHQN01017803.1 14197 12499 - 429 M 88 264 S 0 2 5 0 2 I 0 918 3 0 2 S 1 1 M 42 126 G 2 0 M 57 171 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 12500 14197 429 - . gene_id 1 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 13932 14197 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13932 14197 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 13930 13931 . - . intron_id 1 ; splice_site "gt" LHQN01017803.1 exonerate:protein2genome:local intron 13010 13931 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 13010 13011 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 12710 13009 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12710 13009 . - . insertions 0 ; deletions 2 LHQN01017803.1 exonerate:protein2genome:local splice5 12708 12709 . - . intron_id 2 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 12648 12709 . - . intron_id 2 LHQN01017803.1 exonerate:protein2genome:local splice3 12648 12649 . - . intron_id 1 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 12500 12647 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12500 12647 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 12500 14197 429 - . alignment_id 1 ; Query gi|805793799|ref|XP_012142565.1| ; Align 14198 128 264 ; Align 13009 217 126 ; Align 12883 261 171 ; Align 12647 319 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 417 Query range: 120 -> 376 Target range: 18474 -> 16906 121 : AlaPheTyrSerSerIleTyrIleAlaSerAlaTyrPheAlaMetMetLeuPheLeuGln : 140 ||| ! !..! !!|||!:! !!.!!:!||||||.!!..! !.!.||||||:!!||| AlaThrLeuAspArgIlePheProValAsnAlaTyrIleCysSerPheLeuPheIleGln 18474 : GCAACTCTCGATCGGATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAA : 18417 141 : MetProTrpTrpProArgValAlaAspIleLeuMetProLeuAsnAlaSerArgProArg : 160 :!!||||||! ! !!|||:!!!.!:!! ! !! ! !!! !||| !!!!! ! ! ! ValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeu 18416 : GTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTG : 18357 161 : GlyTyrIlePheProAlaTyrTyrTyrValAspAspAspLysTyrTyrTyrTrpIleIle : 180 ! !:!! ! |||!.!||||||!:!||||||!!:! :!!|||||||||!::|||||| ProValValValProGlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIle 18356 : CCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATA : 18297 181 : AlaTyrSerSerIleAlaThrIleIleThrValCysGlyTyrIleAlaCysAspIleTyr : 200 !:!!.!!!!! !.!!! !:!:|||..!||| ! !||| !|||||||||! ! ! LeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCysAspThrSer 18296 : CTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGT : 18237 201 : PheIleTyrAlaValGlnHisAlaCysGlyLeuPheThrValAlaGlyTyrAlaLys > : 220 !:!!!: !|||||||||.!!||||||||||||.!!|||||||||! ! !!!. TyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly***GluAsn-+ 18236 : TACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGGTGAGAAAACtt. : 18175 221 : >>> Target Intron 1 >>>> AlaIleAspAspPheTyrTyrGlyIleLeuPheI : 231 315 bp ! !|||!!: ! !:!! !! ! !||||||! ++GluIleGluArgGlyHisAspThrTyrLeuPheT 18174 : ........................agGAAATTGAACGCGGCCATGACACGTACCTTTTCA : 17829 232 : leValValGlyMetThrIleGlyAlaPheSerSerThrLeuPheTrpValSerSerLeuA : 251 ! !:!!|||:!!..!||| !..!||||||! !||||||.!! !|||||| ||| hrCysLeuGlyLeuValIleLeuCysPheSerIleThrLeuIleLysValSerPheLeuP 17828 : CCTGCTTAGGCTTGGTGATTCTATGCTTCAGTATTACTCTGATCAAGGTGagcttccttt : 17769 252 : snPheIleLeuThrAspAspSerAsnLeuSerAspAspSerSerLeuLeuTyrIlePheS : 271 ::: !||| !!! !:::! !!!! ... ... :::|||| heProLeuSerTyrAspTyrIleSerArgCysLeuIleCysGlyAsnPheSerLeuPheS 17768 : ttcctctttcctaCGACTACATTTCGCGTTGTTTAAtctgtggaaatttttcactgtttt : 17709 272 : erLysGlnLeuSerLysMetLysProCysAlaGlnPheTyrGluTyrIleValPheLeuT : 291 ||.!.|||||||||! ! ! ! ! ! !.!.||||||..!||| ! !||| ! erAsnGlnLeuSerThrSerAspPheAspIleAspPheTyrArgTyrCysSerPheThrL 17708 : caaATCAGCTGAGTACGTCGGATTTCGACATAGACTTCTACAGATATTGCAGTTTTACGT : 17649 292 : hrIleGlnLeuLeuHisIlePhePheLeuAlaIleGlnGlyGlnPheMetIleAsnArgT : 311 ! !||||||:!!|||:!:||| !!:!! !:!!||||||||||||:!!:!::!! ! euCysGlnLeuMetHisLeuPheValIleMetLeuGlnGlyGlnPheValLeuAspSerC 17648 : TGTGTCAACTGATGCACCTGTTCGTTATCATGCTTCAGGGACAGTTCGTGCTGGATTCGT : 17589 312 : hrAspIleValTyrAsnGln{Il} >>>> Target Intron 2 >>>> {e}TyrG : 320 !!!:! !:!!:!!.!. !{||} 402 bp {|}|||| ysGluArgIleHisGluAla{Il}++ ++{e}TyrG 17588 : GCGAGAGAATTCACGAGGCG{AT}gt.........................ag{A}TACG : 17160 321 : luGlyGlnTrpTyrAsnSerValProLysThrGlnGluLeuPheIleLeuAlaLeuArgT : 340 ||..! !||||||!..||| ! !!|||||||||! !|||!:!:!::!!|||||||||! luSerLeuTrpTyrThrSerSerSerLysThrGlnAlaLeuTyrValValAlaLeuArgA 17159 : AATCATTATGGTACACAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCGTTACGAA : 17100 341 : hrAlaMetAsnProProGlnIleThrAlaGlyGlyValIleAlaMetAsnLeuGlnThrP : 360 ! !:!:!..||| !! :!!||||||||||||:!!:!: !:!!|||:!!|||!:!| rgAsnLeuThrProThrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMetGlnSerP 17099 : GAAACCTAACACCTACCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATGCAAAGCT : 17040 361 : heAlaGlu >>>> Target Intron 3 >>>> ValValLysValSerPheSerTy : 370 |||||||| 83 bp |||||||||:!!||| !!||||| heAlaGlu++ ++ValValLysMetSerValSerTy 17039 : TCGCAGAGgt.........................agGTGGTAAAAATGTCCGTTTCCTA : 16927 371 : rTyrThrValLeuGlnThr : 376 |||||||||||||:!!||| rTyrThrValLeuLysThr 16926 : TTATACGGTGTTGAAGACA : 16907 vulgar: gi|805793799|ref|XP_012142565.1| 120 376 . LHQN01017803.1 18474 16906 - 417 M 99 297 5 0 2 I 0 311 3 0 2 M 98 294 S 0 2 5 0 2 I 0 398 3 0 2 S 1 1 M 44 132 5 0 2 I 0 79 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 16907 18474 417 - . gene_id 2 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 18178 18474 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18178 18474 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 18176 18177 . - . intron_id 1 ; splice_site "TT" LHQN01017803.1 exonerate:protein2genome:local intron 17863 18177 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 17863 17864 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 17567 17862 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17567 17862 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 17565 17566 . - . intron_id 2 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 17165 17566 . - . intron_id 2 LHQN01017803.1 exonerate:protein2genome:local splice3 17165 17166 . - . intron_id 1 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 17032 17164 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17032 17164 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 17030 17031 . - . intron_id 3 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 16949 17031 . - . intron_id 3 LHQN01017803.1 exonerate:protein2genome:local splice3 16949 16950 . - . intron_id 2 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 16907 16948 . - . LHQN01017803.1 exonerate:protein2genome:local exon 16907 16948 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 16907 18474 417 - . alignment_id 2 ; Query gi|805793799|ref|XP_012142565.1| ; Align 18475 121 297 ; Align 17863 220 294 ; Align 17164 319 132 ; Align 16949 363 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 282 Query range: 274 -> 363 Target range: 28921 -> 28521 275 : SerLysMetLysProCysAlaGlnPheTyrGluTyrIleValPheLeuThrIleGlnLeu : 294 |||! !||| ! |||||| !:!!||||||:!!||| !!.!||||||..!:!:|||||| SerMetMetAspProCysMetGluPheTyrLysTyrCysAlaPheLeuValValGlnLeu 28921 : TCCATGATGGACCCTTGCATGGAGTTCTACAAGTATTGCGCTTTCTTGGTGGTGCAACTG : 28864 295 : LeuHisIlePhePheLeuAlaIleGlnGlyGlnPheMetIleAsnArgThrAspIleVal : 314 :!!|||:!:.!!||||||:!!|||||||||!!.|||:!:||| ! ! !|||!!:..! ValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleLeuSerHisAspMetThr 28863 : GTTCATTTGCTTTTCCTTTCTATCCAGGGACACTTTGTTATACTCTCGCATGACATGACT : 28804 315 : TyrAsnGln{Il} >>>> Target Intron 1 >>>> {e}TyrGluGlyGlnTrp : 323 |||:!!.!.{||} 133 bp {|}|||...!.!:!!||| TyrAspAsn{Il}++ ++{e}TyrSerAlaLysTrp 28803 : TACGACAAC{AT}gt.........................ag{A}TATAGCGCAAAATGG : 28644 324 : TyrAsnSerValProLysThrGlnGluLeuPheIleLeuAlaLeuArgThrAlaMetAsn : 343 ||||||||| !|||!:!|||||| |||!:!:!:||||||||||||! !::!:!!!.! TyrAsnSerSerProArgThrGlnThrLeuTyrValLeuAlaLeuArgArgSerLeuThr 28643 : TACAACAGTTCGCCGAGAACGCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACT : 28584 344 : ProProGlnIleThrAlaGlyGlyValIleAlaMetAsnLeuGlnThrPheAlaGluVal : 363 |||||| !:!!||||||||||||:!!|||:!!:!!||||||:!!||||||||||||||| ProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGluVal 28583 : CCGCCATTGCTCACTGCGGGAGGACTGATTTCCTTGAATTTGGAGACTTTTGCCGaggta : 28524 vulgar: gi|805793799|ref|XP_012142565.1| 274 363 . LHQN01017803.1 28921 28521 - 282 M 43 129 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 28522 28921 282 - . gene_id 3 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 28791 28921 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28791 28921 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 28789 28790 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 28658 28790 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 28658 28659 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 28522 28657 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28522 28657 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 28522 28921 282 - . alignment_id 3 ; Query gi|805793799|ref|XP_012142565.1| ; Align 28922 275 129 ; Align 28657 319 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 232 Query range: 120 -> 216 Target range: 26276 -> 25988 121 : AlaPheTyrSerSerIleTyrIleAlaSerAlaTyrPheAlaMetMetLeuPheLeuGln : 140 :!!||||||! !!!!.!! ! ! !!.! ! !! !!...! ||||||:!! SerPheTyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCys 26276 : TCATTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGC : 26219 141 : MetProTrpTrpProArgValAlaAspIleLeuMetProLeuAsnAlaSerArgProArg : 160 :!!|||!:: ! !!! !:!! !|||||||||||||||||||||! !!!!||| !!||| LeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArg 26218 : TTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGG : 26159 161 : GlyTyrIlePheProAlaTyrTyrTyrValAspAspAspLysTyrTyrTyrTrpIleIle : 180 !!:!:!!!:!||||||||||||!:!||||||!!:|||||||||:!!|||! !|||:!! LeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleVal 26158 : TTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTA : 26099 181 : AlaTyrSerSerIleAlaThrIleIleThrValCysGlyTyrIleAlaCysAspIleTyr : 200 !.!:!!! !! !:!!!.!..!:!!!!: !:!!! !! !!:! !||||||||| ! !! GlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsn 26098 : GGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAAT : 26039 201 : PheIleTyrAlaValGlnHisAlaCysGlyLeuPheThrValAlaGly : 216 !:!:!:|||||||||||||||||||||||||||!!..!!:!!|||||| TyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 26038 : TACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 25989 vulgar: gi|805793799|ref|XP_012142565.1| 120 216 . LHQN01017803.1 26276 25988 - 232 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26276 232 - . gene_id 4 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26276 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26276 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26276 232 - . alignment_id 4 ; Query gi|805793799|ref|XP_012142565.1| ; Align 26277 121 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 194 Query range: 318 -> 376 Target range: 22422 -> 22171 319 : TyrGluGlyGlnTrpTyrAsnSerValProLysThrGlnGluLeuPheIleLeuAlaLeu : 338 ||||||..! !|||||||||||| ! !|||||||||! !|||!:!|||||||||||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeu 22422 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTA : 22365 339 : ArgThrAlaMetAsnProProGlnIleThrAlaGlyGlyValIleAlaMetAsnLeuGln : 358 |||!:!::!:!:||||||||| !:!!|||||||||||| !!|||.!!:!!||||||:!! ArgSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLys 22364 : CGGAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAG : 22305 359 : ThrPheAlaGlu >>>> Target Intron 1 >>>> ValValLysValSerPheS : 369 ||||||:!!||| 77 bp :!!:!!||| !||| ! | ThrPheSerGlu++ ++IleIleLysSerSerValS 22304 : ACCTTCTCAGAGgt.........................agATTATAAAATCATCCGTGT : 22195 370 : erTyrTyrThrValLeuGlnThr : 376 ||||||||||||||:!!|||:!! erTyrTyrThrValMetGlnSer 22194 : CTTACTATACGGTGATGCAATCG : 22172 vulgar: gi|805793799|ref|XP_012142565.1| 318 376 . LHQN01017803.1 22422 22171 - 194 M 44 132 5 0 2 I 0 73 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 22172 22422 194 - . gene_id 5 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 22291 22422 . - . LHQN01017803.1 exonerate:protein2genome:local exon 22291 22422 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 22289 22290 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 22214 22290 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 22214 22215 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 22172 22213 . - . LHQN01017803.1 exonerate:protein2genome:local exon 22172 22213 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 22172 22422 194 - . alignment_id 5 ; Query gi|805793799|ref|XP_012142565.1| ; Align 22423 319 132 ; Align 22214 363 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 187 Query range: 122 -> 216 Target range: 29655 -> 29370 123 : TyrSerSerIleTyrIle<->AlaSerAlaTyrPheAlaMetMetLeuPheLeuGlnMet : 141 :::||||||:::|||:!! |||!:!!.! !|||..! :!:|||||| ! !:!! PheSerSerLeuTyrValAlaAlaAsnGlyIlePheCysTyrValLeuPheThrAlaVal 29655 : ttttcttctctataTGTCGCAGCAAATGGAATCTTCTGCTACGTTCTCTTCACCGCAGTG : 29598 142 : ProTrpTrpProArgValAlaAspIleLeuMetProLeuAsnAlaSerArgProArgGly : 161 !! ||||||||| !|||:!!:!! !||| !|||! !|||||| ! !||| AlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValGly 29597 : GCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTGGGC : 29538 162 : TyrIlePheProAlaTyrTyrTyrValAspAspAspLysTyrTyrTyrTrpIleIleAla : 181 !:!|||!:!|||||| !!||| !||||||!!:!!::!!:!!||||||!:::!:!!:!.! PheIleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyrTyrTyrLeuMetGly 29537 : TTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTACTACTATCTGATGGGT : 29478 182 : TyrSerSerIleAlaThrIleIleThrValCysGlyTyrIleAlaCysAspIleTyrPhe : 201 :!!! ! ! !!.!! !! !:!!..! !!! !! !||||||:!!||||||! !!:! HisMetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThrIleTyr 29477 : CACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATCTAC : 29418 202 : IleTyrAlaValGlnHisAlaCysGlyLeuPheThrValAlaGly : 216 !!: !! !|||||||||||||||||||||!!.!.!:!!:!!||| MetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSerGly 29417 : ATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCTGGG : 29371 vulgar: gi|805793799|ref|XP_012142565.1| 122 216 . LHQN01017803.1 29655 29370 - 187 M 6 18 G 0 3 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29371 29655 187 - . gene_id 6 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29371 29655 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29371 29655 . - . insertions 3 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 29371 29655 187 - . alignment_id 6 ; Query gi|805793799|ref|XP_012142565.1| ; Align 29656 123 18 ; Align 29635 129 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 160 Query range: 318 -> 365 Target range: 25043 -> 24902 319 : TyrGluGlyGlnTrpTyrAsnSerValProLysThrGlnGluLeuPheIleLeuAlaLeu : 338 ||||||..! !|||||||||||| ! !|||||||||! !|||!:!|||||||||||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeu 25043 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTA : 24986 339 : ArgThrAlaMetAsnProProGlnIleThrAlaGlyGlyValIleAlaMetAsnLeuGln : 358 |||!:!::!:!:||||||||| !:!!|||||||||||| !!|||.!!:!!||||||:!! ArgSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLys 24985 : CGGAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAG : 24926 359 : ThrPheAlaGluValValLys : 365 ||||||:!!||||||..!!:! ThrPheSerGluValThrArg 24925 : ACCTTCTCAGAGGTAACGAGG : 24903 vulgar: gi|805793799|ref|XP_012142565.1| 318 365 . LHQN01017803.1 25043 24902 - 160 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 24903 25043 160 - . gene_id 7 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 24903 25043 . - . LHQN01017803.1 exonerate:protein2genome:local exon 24903 25043 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 24903 25043 160 - . alignment_id 7 ; Query gi|805793799|ref|XP_012142565.1| ; Align 25044 319 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 150 Query range: 169 -> 257 Target range: 26240 -> 25976 170 : IlePheValSerLeuPheLeuCysIleProLeuSerSerPheAlaLeuAspIleIleVal : 189 :!!! !!.!:!!||||||:!!|||:!:|||!!! !||| !|||||||||:!!:!! LeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMet 26240 : TTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATG : 26183 190 : ProLeuAsnGluSerArgProArgValSerLeuPheLysLeuAsnTyrIleMetAspMet : 209 ||||||||||||!!!||| !!|||:!!! !:!!!:! ! ! !!|||.!!:!:||| ! ProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGlu 26182 : CCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAG : 26123 210 : GluAspHisPheTyrIleValTyrLeuHisSerAlaCysCysAlaLeuAsnValValLeu : 229 !!: ! :!! !|||:!::!! !|||! ! ! ! !.!:!!! :!!:!!! ! AspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSer 26122 : GACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCT : 26063 230 : IleValThrThrMetAspSerLeuTyrMetValIleIleHisTyrSerCysGlyLeuPhe : 249 :!! !! !.!! |||:!! !|||:!! ! !:!:!!.:!!:!!|||||||||!!. ValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeu 26062 : GTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTG : 26003 250 : AlaLeuCysGlyTyrGlnIleGln : 257 |||:!!...|||!! !:!!||| AlaIleAlaGly***LeuValGln 26002 : GCCATTGCAGGGTAATTAGTTCAA : 25977 vulgar: gi|805795905|ref|XP_012143137.1| 169 257 . LHQN01017803.1 26240 25976 - 150 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25977 26240 150 - . gene_id 1 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25977 26240 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25977 26240 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25977 26240 150 - . alignment_id 1 ; Query gi|805795905|ref|XP_012143137.1| ; Align 26241 170 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 166 -> 242 Target range: 33711 -> 33483 167 : SerLeuTrpIlePheValSerLeuPheLeuCysIleProLeuSerSerPheAlaLeuAsp : 186 !!!:!!!::||| ||||||:!!|||! ! ! ||||||! ! !!||| !|||||| ThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeuAsp 33711 : ACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTGGAC : 33654 187 : IleIleValProLeuAsnGluSerArgProArgValSerLeuPheLysLeuAsnTyrIle : 206 :!!||| !||||||||||||||||||||||||:!!! ! !!:!||| ! !!! ! ! LeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyrCysTyr 33653 : CTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTACTGTTAC : 33594 207 : MetAspMetGluAspHisPheTyrIleValTyrLeuHisSerAlaCysCysAlaLeuAsn : 226 .!.:!! !!!:|||:!!!:!||| !||| !:!!!!!::!...||| ! !! PheAsnProAspAspTyrTyrTyrTyrValValGlyTyrThrSerAlaCysIleGlyMet 33593 : TTCAATCCGGACGACTACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATAGGAATG : 33534 227 : ValValLeuIleValThrThrMetAspSerLeuTyrMetValIleIle : 242 !.!! !|||:!::!!..! ! |||! !:!! !!: !:!!:!! AlaGlyLeuValLeuValGlyAlaAspIleIleMetIleHisLeuVal 33533 : GCCGGACTCGTGCTTGTCGGCGCTGACATTATTATGATACATCTTGTA : 33484 vulgar: gi|805795905|ref|XP_012143137.1| 166 242 . LHQN01017803.1 33711 33483 - 120 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33484 33711 120 - . gene_id 2 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33484 33711 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33484 33711 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33484 33711 120 - . alignment_id 2 ; Query gi|805795905|ref|XP_012143137.1| ; Align 33712 167 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 157 -> 253 Target range: 18474 -> 18186 158 : SerGlnMetGlyThrLeuTyrArgSerSerLeuTrpIlePheValSerLeuPheLeuCys : 177 :!! :!:! ! !:!!!:!! ! !!:! !!::|||! ! !! !||||||:!! AlaThrLeuAspArgIlePheProValAsnAlaTyrIleCysSerPheLeuPheIleGln 18474 : GCAACTCTCGATCGGATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAA : 18417 178 : IleProLeuSerSerPheAlaLeuAspIleIleValProLeuAsnGluSerArgProArg : 197 :!:|||! !|||!!! !:!!:!! ! ! !!! !||| !!!!! ! ! ! ValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeu 18416 : GTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTG : 18357 198 : ValSerLeuPheLysLeuAsnTyrIleMetAspMetGluAspHisPheTyrIleValTyr : 217 ! !:!! ! ! !!|||.!!:!:||| ! !!!::!!!:!||| !:!! ProValValValProGlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIle 18356 : CCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATA : 18297 218 : LeuHisSerAlaCysCysAlaLeuAsnValValLeuIleValThrThrMetAspSerLeu : 237 ||||||.!!.!!||| !|||! !||||||:!!:!: ! !.!! |||!!! ! LeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCysAspThrSer 18296 : CTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGT : 18237 238 : TyrMetValIleIleHisTyrSerCysGlyLeuPheAlaLeuCysGly : 253 |||||||||:!::!:!!.:!!!!!|||||||||||||||:!!..!||| TyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly 18236 : TACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 18187 vulgar: gi|805795905|ref|XP_012143137.1| 157 253 . LHQN01017803.1 18474 18186 - 120 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18187 18474 120 - . gene_id 3 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18187 18474 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18187 18474 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18187 18474 120 - . alignment_id 3 ; Query gi|805795905|ref|XP_012143137.1| ; Align 18475 158 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 368 -> 424 Target range: 32846 -> 32580 369 : TyrSerSerLysTrpTyrGlnThrProIleLysPheGlnArgValLeuGluIleMetGln : 388 |||..!:!!! ||||||:!!! !||| !|||.!!||| !:!! !! :!! !! TyrGluAlaIleTrpTyrLysMetProProLysLeuGlnLeuLeuAspValValAlaLeu 32846 : TACGAGGCAATTTGGTATAAGATGCCACCTAAACTTCAGTTGCTAGACGTTGTAGCGCTT : 32789 389 : IleArgCysSerArgProCysLysLeuThrAlaGlyGlyLeuTyrGluMetAsnIleGlu : 408 ! !!:! !! !! !||| !! !|||||||||||||||||| ..!:!::!!:!:.!. ArgLysSerLeuThrProProIleLeuThrAlaGlyGlyLeuMetArgLeuAspLeuAsn 32788 : AGAAAAAGCCTAACTCCTCCTATACTGACGGCGGGAGGGTTGATGCGGTTAGATTTGAAT : 32729 409 : AsnPheGlySer >>>> Target Intron 1 >>>> MetIleLysThrCysValS : 419 ::!|||!.!..! 98 bp ::::!:|||.!!||||||| SerPheAlaGln++ ++LeuLeuLysAlaCysValS 32728 : TCTTTCGCACAGgt.........................agctaCTGAAAGCTTGCGTCT : 32598 420 : erTyrPheThrValLeu : 424 |||||!:!|||!.!||| erTyrTyrThrAlaLeu 32597 : CGTATTATACGGCACTG : 32581 vulgar: gi|805795905|ref|XP_012143137.1| 368 424 . LHQN01017803.1 32846 32580 - 101 M 44 132 5 0 2 I 0 94 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 32581 32846 101 - . gene_id 4 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 32715 32846 . - . LHQN01017803.1 exonerate:protein2genome:local exon 32715 32846 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 32713 32714 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 32617 32714 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 32617 32618 . - . intron_id 0 ; splice_site "ag" LHQN01017803.1 exonerate:protein2genome:local cds 32581 32616 . - . LHQN01017803.1 exonerate:protein2genome:local exon 32581 32616 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 32581 32846 101 - . alignment_id 4 ; Query gi|805795905|ref|XP_012143137.1| ; Align 32847 369 132 ; Align 32617 413 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805798911|ref|XP_012143985.1| PREDICTED: uncharacterized protein LOC100876205 [Megachile rotundata] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 346 -> 397 Target range: 39971 -> 40124 347 : GlyIleGlyTyrSerLeuTyrSerCysSerTrpTyrSerLeuProAlaAsnValAlaLys : 366 ||||||||| ! ||| !|||..!|||!:!||||||..!|||||| !!!!. !||| GlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHisAlaVal 39972 : GGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCATGCTGTT : 40029 367 : AsnIleValLeuValIleLeuArgAlaGlnIleProValHisLeuThrAlaGlyLysPhe : 386 ::::!!|||:!!||||||! !|||||||||:!: !! !!!!.:!!||||||||||||||| SerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGlyLysPhe 40030 : TCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGAAAATTC : 40089 387 : PheValValAsnLeuGluThrPheMetSerIle : 397 ! ! !!::!|||||| !|||! :!!:!: SerProPheSerLeuGluLeuPheAsnAlaVal 40090 : AGTCCCTTTTCTCTCGAGCTGTTTAACGCTGTG : 40124 vulgar: gi|805798911|ref|XP_012143985.1| 346 397 . KQ414804.1 39971 40124 + 133 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39972 40124 133 + . gene_id 1 ; sequence gi|805798911|ref|XP_012143985.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39972 40124 . + . KQ414804.1 exonerate:protein2genome:local exon 39972 40124 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39972 40124 133 + . alignment_id 1 ; Query gi|805798911|ref|XP_012143985.1| ; Align 39972 347 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805798911|ref|XP_012143985.1| PREDICTED: uncharacterized protein LOC100876205 [Megachile rotundata] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 350 -> 408 Target range: 34402 -> 34659 351 : SerLeuTyrSerCysSerTrpTyrSerLeuProAlaAsnValAlaLysAsnIleValLeu : 370 ||| !|||..!! !:!||||||!:!:!! !! !! ! !|||||| !:!!:!!!!! SerAlaTyrGluSerAsnTrpTyrAsnValSerProProGluAlaLysCysLeuLeuPhe 34403 : TCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCAGAAGCCAAGTGCCTTTTATTT : 34460 371 : ValIleLeuArgAlaGlnIleProValHisLeuThrAlaGlyLysPhePheValValAsn : 390 :!!!!:! !|||.!! !|||:!! !|||||||||||||||||| !..! !!::! IleMetHisArgThrAlaArgProLeuCysLeuThrAlaGlyLysPheSerThrPheSer 34461 : ATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCAGGAAAATTCAGTACCTTCTCC : 34520 391 : LeuGluThrPheMetSer >>>> Target Intron 1 >>>> IleLeuLysThrS : 401 :!!|||! !|||! !!! 83 bp ||||||||||||: MetGluMetPheSerThr++ ++IleLeuLysThrA 34521 : ATGGAAATGTTCAGTACTgt.........................agattcTGAAAACAG : 34636 402 : erMetSerTyrLeuSerIleLeu : 408 !!|||.!!|||||||||:!!||| laMetGlyTyrLeuSerValLeu 34637 : CAATGGGATATCTTTCAGTTCTC : 34659 vulgar: gi|805798911|ref|XP_012143985.1| 350 408 . KQ414804.1 34402 34659 + 111 M 46 138 5 0 2 I 0 79 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34403 34659 111 + . gene_id 2 ; sequence gi|805798911|ref|XP_012143985.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34403 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34403 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34659 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34659 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34403 34659 111 + . alignment_id 2 ; Query gi|805798911|ref|XP_012143985.1| ; Align 34403 351 138 ; Align 34624 397 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 337 -> 388 Target range: 39974 -> 40127 338 : ValGlyGluLysAlaTyrSerValGluTrpTyrArgLeuSerHisArgThrAlaLeuSer : 357 :!!|||:!!...||||||..! !.!.|||||| !||| !!! !:! !|||:!!||| IleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHisAlaValSer 39975 : ATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCATGCTGTTTCG : 40032 358 : LeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysIleIle : 377 ||||||!!::!:|||!!!|||:!!..!:!! !.!!:!!|||||||||||||||.!!! ! LeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGlyLysPheSer 40033 : TTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGT : 40092 378 : ArgIleSerLeuAlaThrPheGlyAspValSer : 388 ! !.!!||||||! ! !|||..!! !|||||| ProPheSerLeuGluLeuPheAsnAlaValSer 40093 : CCCTTTTCTCTCGAGCTGTTTAACGCTGTGAGT : 40127 vulgar: gi|805766364|ref|XP_012135240.1| 337 388 . KQ414804.1 39974 40127 + 106 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39975 40127 106 + . gene_id 1 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39975 40127 . + . KQ414804.1 exonerate:protein2genome:local exon 39975 40127 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39975 40127 106 + . alignment_id 1 ; Query gi|805766364|ref|XP_012135240.1| ; Align 39975 338 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 177 -> 251 Target range: 457189 -> 457411 178 : IleProLeuSerSerPheAlaLeuAspIleIleValProLeuAsnGluSerArgProA : 197 :!:! !|||! ! !!.!. !|||||||||:!:|||||||||||||||||||||||| LeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgProC 457190 : TTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCT : 457247 198 : rgValSerLeuPheLysLeuAsnTyrIleMetAspMetGluAspHisPheTyrIleVa : 216 !!! !! !! !.!!! ! !.!.|||.!!:!:||||||:!! ! :!!.!.:!! !:! ysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIl 457248 : GTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATAT : 457304 217 : lTyrLeuHisSerAlaCysCysAlaLeuAsnValValLeuIleValThrThrMetAsp : 235 ! ! !|||! ! ! ||| !|||! !!.!!.! !! :!!|||.!!! !!: eIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGlu 457305 : CATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAA : 457361 236 : SerLeuTyrMetValIleIleHisTyrSerCysGlyLeuPheAlaLeu : 251 |||||| !!!:..!! !:!!! :!! !|||||||||||| !||| SerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457362 : TCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: gi|805795905|ref|XP_012143137.1| 177 251 . KQ414815.1 457189 457411 + 123 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457190 457411 123 + . gene_id 1 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457190 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457190 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457190 457411 123 + . alignment_id 1 ; Query gi|805795905|ref|XP_012143137.1| ; Align 457190 178 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 184 -> 253 Target range: 485725 -> 485932 185 : LeuAspIleIleValProLeuAsnGluSerArgProArgValSerLeuPheLysLeuA : 204 |||||||||:!::!!||||||||| ! !!!|||||||||..!! !! !.!.!!.! !. LeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnSerG 485726 : CTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACTCGG : 485783 205 : snTyrIleMetAspMetGluAspHisPheTyrIleValTyrLeuHisSerAlaCysCy : 223 !.:!!.!!:!:|||..!:!! ! :!!|||||| !:!! !||| !!.! !! luHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLeuPh 485784 : AACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCTCTT : 485840 224 : sAlaLeuAsnValValLeuIleValThrThrMetAspSerLeuTyrMetValIleIle : 242 !!.!:!!! !! !!.!:!!:!!:!! !!:! ::: ||| |||..!|||||| eValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIleIle 485841 : CGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATAATA : 485897 243 : HisTyrSerCysGlyLeuPheAlaLeuCysGly : 253 !!.:!!!!!|||||||||!:!.!!:!! !||| GlnHisThrCysGlyLeuTyrThrIleValGly 485898 : CAGCACACCTGTGGTTTGTATACAATCGTTGGG : 485932 vulgar: gi|805795905|ref|XP_012143137.1| 184 253 . KQ414815.1 485725 485932 + 119 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485726 485932 119 + . gene_id 2 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485726 485932 . + . KQ414815.1 exonerate:protein2genome:local exon 485726 485932 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485726 485932 119 + . alignment_id 2 ; Query gi|805795905|ref|XP_012143137.1| ; Align 485726 185 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 171 -> 251 Target range: 481995 -> 482235 172 : ValSerLeuPheLeuCysIleProLeuSerSerPheAlaLeuAspIleIleValProL : 191 |||! !:!!.!.:!! !! !:!!|||||||||!.!||||||:!!|||||||||| ValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValProL 481996 : GTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTCCTC : 482053 192 : euAsnGluSerArgProArgValSerLeuPheLysLeuAsnTyrIleMetAspMetGl : 210 ||||||||!!!||| !!!.! !! !! ! ! ..!:!!.!.|||.!!!!:|||..!:! euAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGlnGl 482054 : TAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCAGCA : 482110 211 : uAspHisPheTyrIleValTyrLeuHisSerAlaCysCysAlaLeuAsnValValLeu : 229 ! ! :!!! !.!!:!! !!!|||..! !! !! ! !||| |||!.! ! nLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAlaThr 482111 : GAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCAACG : 482167 230 : IleValThrThrMetAspSerLeuTyrMetValIleIleHisTyrSerCysGlyLeuP : 249 |||:!!..! !!!:!!:!!!||| !:!::!! :!!.!.:!!:!!....!!|||| IleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerLeuP 482168 : ATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCTTGT : 482227 250 : heAlaLeu : 251 ||.!!||| heThrLeu 482228 : TCACCCTT : 482235 vulgar: gi|805795905|ref|XP_012143137.1| 171 251 . KQ414815.1 481995 482235 + 109 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481996 482235 109 + . gene_id 3 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481996 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481996 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481996 482235 109 + . alignment_id 3 ; Query gi|805795905|ref|XP_012143137.1| ; Align 481996 172 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 119 -> 251 Target range: 475289 -> 475770 120 : HisAsnIleTyrArgLysLysPheGluAsnIlePheGluArgMetThrArgLeuTrpG : 139 .!.||| !! !:!! !:!! ! :!!.!.:!!.!.|||!:!!!:! ! ! !||| GluAsnGluLeuGlnIleGlnValLysGlnLeuMetGluLysIleLysTyrAspTrpM 475290 : GAGAATGAATTACAAATACAGGTGAAGCAGTTAATGGAGAAGATAAAGTACGATTGGA : 475347 140 : luIleAlaGluValAsnGlyGluLeuGlnIleLeuLysGluValIleAspGluGlySe : 158 !! !.!.! !.!.|||||||||:::|||||||||... ! !!..!|||!. etThrIleAsnAspGluGlyGluLeuArgIleLeuLysAsnAsnAlaTyrArgGlyLy 475348 : TGACGATCAACGACGAGGGAGAGCTTagaatcttgaaaaataacgCTTACAGAGGAAA : 475404 159 : rGlnMetGlyThrLeuTyrArg{S} >>>> Target Intron 1 >>>> {er} : 166 ! !.!. !! !:!!!:! !{!} 85 bp { !} sGlyPheThrIleIlePheAla{L}++ ++{eu} 475405 : AGGATTCACGATCATTTTCGCA{T}gt.........................ag{TA} : 475514 167 : SerLeuTrpIlePheValSerLeuPheLeuCysIleProLeuSerSerPheAlaLeuA : 186 !:!!!:: ! :!!! ! !.!.:!!! :!!! !!!!|||||| !|||| LeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerSerLysIleLeuA 475515 : CTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGTCTAAGATCCTTG : 475573 187 : spIleIleValProLeuAsnGluSerArgProArgValSerLeuPheLysLeuAsnTy : 205 || !:!::!!|||||||||||||||||||||!!! !||||||...::::::...|| spSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleArgIleGluTy 475574 : ATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaatagaata : 475630 206 : rIleMetAspMetGluAspHisPheTyrIleValTyrLeuHisSerAlaCysCysAla : 224 |...:::::: :!! ! :!!||||||:!: ! :!!:!!..!.!! ! rPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrValThrIle 475631 : tttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGTAACGATC : 475687 225 : LeuAsnValValLeuIleValThrThrMetAspSerLeuTyrMetValIleIleHisT : 244 ||| !!! ! !! !..!.!!! !!::!!:!!!:!! :!! :!:!!.: LeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrpLeuGlnH 475688 : CTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGGTTGCAAC : 475747 245 : yrSerCysGlyLeuPheAlaLeu : 251 !!!!! ...|||||| ::: isCysIleSerLeuPheGluIle 475748 : ATTGCATaagtttatttgaaatt : 475770 vulgar: gi|805795905|ref|XP_012143137.1| 119 251 . KQ414815.1 475289 475770 + 107 M 46 138 S 0 1 5 0 2 I 0 81 3 0 2 S 1 2 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475290 475770 107 + . gene_id 4 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 475290 475428 . + . KQ414815.1 exonerate:protein2genome:local exon 475290 475428 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 475429 475430 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 475429 475513 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 475512 475513 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 475514 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475514 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475290 475770 107 + . alignment_id 4 ; Query gi|805795905|ref|XP_012143137.1| ; Align 475290 120 138 ; Align 475516 167 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805773782|ref|XP_012137305.1| PREDICTED: uncharacterized protein LOC105662050 isoform X1 [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 127 -> 182 Target range: 483196 -> 483358 128 : IleSerLeuArgThrTyrSerThrAsnTrpTyrGluThrSerValAlaThrGlnLysL : 147 :!!!.!:!!!.!! !||||||!.!||||||||||||||||||:!! !! !||||||| ValLysMetAsnArgTyrSerAsnAsnTrpTyrGluThrSerIleProLeuGlnLysL 483197 : GTTAAAATGAACAGATACAGCAATAATTGGTACGAAACGTCCATACCCCTGCAGAAAT : 483254 148 : euLeuGlnLeuIleIleLeuAsnSerHisLysSerGlyPheValPheAsnPheLeuCy : 166 ||||| !:!!|||!!::!!!..||| ! ! ||| ! ! !!:!:!!|||!!! ! euLeuLeuIleIleMetMetArgSerIleAspSer---CysSerTyrAspPhePheGl 483255 : TACTGTTGATCATCATGATGAGGAGCATCGATAGT---TGCAGTTATGATTTCTTCGG : 483308 167 : sValTyrValProSerMetGluGlyPheAlaValValArgThrIleSer : 182 ! !!|||..! !!|||!!::!!||||||:!!..!|||!.!! !|||||| yPheTyrThrAlaSerIleGlnGlyPheSerThrValHisIleIleSer 483309 : TTTCTACACCGCTTCGATCCAAGGTTTCTCAACGGTACATATAATTTCC : 483358 vulgar: gi|805773782|ref|XP_012137305.1| 127 182 . KQ414815.1 483196 483358 + 104 M 31 93 G 1 0 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 483197 483358 104 + . gene_id 1 ; sequence gi|805773782|ref|XP_012137305.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 483197 483358 . + . KQ414815.1 exonerate:protein2genome:local exon 483197 483358 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 483197 483358 104 + . alignment_id 1 ; Query gi|805773782|ref|XP_012137305.1| ; Align 483197 128 93 ; Align 483290 160 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 146 -> 216 Target range: 485722 -> 485932 147 : ValAlaAspIleLeuMetProLeuAsnAlaSerArgProArgGlyTyrIlePheProA : 166 :!! !|||||||||!!:||||||||| !!!!||||||||| ! ! !.!. !: IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 167 : laTyrTyrTyrValAspAspAspLysTyrTyrTyrTrpIleIleAlaTyrSerSerIl : 185 !! ! :!!!:!||||||.!..!.||||||!:!||| ||| !|||:!! ! !:! erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 186 : eAlaThrIleIleThrValCysGlyTyrIleAlaCysAspIleTyrPheIleTyrAla : 204 ! !..!|||||| !!.! ! !! :!!::! :::||| ...::: ! uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 205 : ValGlnHisAlaCysGlyLeuPheThrValAlaGly : 216 :!!||||||.!!|||||||||!:!|||:!!!.!||| IleGlnHisThrCysGlyLeuTyrThrIleValGly 485895 : ATACAGCACACCTGTGGTTTGTATACAATCGTTGGG : 485932 vulgar: gi|805793799|ref|XP_012142565.1| 146 216 . KQ414815.1 485722 485932 + 137 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485932 137 + . gene_id 1 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485932 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485932 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485932 137 + . alignment_id 1 ; Query gi|805793799|ref|XP_012142565.1| ; Align 485723 147 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 124 -> 212 Target range: 457141 -> 457405 125 : SerIleTyrIleAlaSerAlaTyrPheAlaMetMetLeuPheLeuGlnMetProTrpT : 144 |||!!: !! !!.!|||.!!|||! !!.! :!!:!!.!! ! !:!!! ! ! SerMetIleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuP 457142 : tcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCT : 457199 145 : rpProArgValAlaAspIleLeuMetProLeuAsnAlaSerArgProArgGlyTyrIl : 163 ::|||! !:!! !||||||:!!:!:|||||||||! !||||||||| !!! !! heProIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTy 457200 : TTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATA : 457256 164 : ePheProAlaTyrTyrTyrValAspAspAspLysTyrTyrTyrTrpIleIleAlaTyr : 182 !.!! !!||| ! |||!:!|||||| ! |||||| :!!!::|||||||||:!! rLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHis 457257 : CCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCAC : 457313 183 : SerSerIleAlaThrIleIleThrValCysGlyTyrIleAlaCysAspIleTyrPheI : 202 ! !! !! ..! !:!:|||.!!!.! ! !! ! !||| !!!: !! .!!| IleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuI 457314 : ATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTA : 457373 203 : leTyrAlaValGlnHisAlaCysGlyLeuPhe : 212 || !|||! !|||!.!|||||||||||| leThrAsnValLeuHisValCysGlyLeuPhe 457374 : TAACGAACGTACTGCACGTTTGTGGATTGTTC : 457405 vulgar: gi|805793799|ref|XP_012142565.1| 124 212 . KQ414815.1 457141 457405 + 129 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457142 457405 129 + . gene_id 2 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457142 457405 . + . KQ414815.1 exonerate:protein2genome:local exon 457142 457405 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457142 457405 129 + . alignment_id 2 ; Query gi|805793799|ref|XP_012142565.1| ; Align 457142 125 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 148 -> 216 Target range: 448097 -> 448301 149 : AspIleLeuMetProLeuAsnAlaSerArgProArgGlyTyrIlePheProAlaTyrT : 168 |||||||||||||||:!!|||!.!|||! !! !!.!! ! !|||! ! ! ! ! AspIleLeuMetProMetAsnValSerThrArgHisGluLeuProPheLeuIleGlnC 448098 : gatattttaATGCCAATGAACGTATCTACACGGCACGAGCTACCCTTCCTAATTCAAT : 448155 169 : yrTyrValAspAspAspLysTyrTyrTyrTrpIleIleAlaTyrSerSerIleAlaTh : 187 !!:! !|||.!.||||||!:!!:!:!!!::|||:!!!.!!:!! !! !:!! !|| ysPheCysAspGlnAspLysPhePheHisTyrIleLeuValPheLeuIleValLeuTh 448156 : GTTTCTGTGATCAAGATAAATTCTTCCACTATATATTAGTTTTCTTGATCGTTCTCAC : 448212 188 : rIleIleThrValCysGlyTyrIleAlaCysAspIleTyrPheIleTyrAlaValGln : 206 ||||:!: !! ! !!! ! :!!||| ! ! !!:!:!: ! !||| rIleLeuGlyGlySerValValLeuAlaThrThrThrThrTyrLeuIlePheSerGln 448213 : TATTTTGGGTGGAAGTGTGGTATTAGCCACTACAACGACTTACTTGATATTCAGTCAA : 448269 207 : HisAlaCysGlyLeuPheThrValAlaGly : 216 |||..!||||||||||||! !:!!|||||| HisCysCysGlyLeuPheLysIleAlaGly 448270 : CATTGTTGTGGATTGTTCAAAATTGCAGGG : 448301 vulgar: gi|805793799|ref|XP_012142565.1| 148 216 . KQ414815.1 448097 448301 + 116 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448098 448301 116 + . gene_id 3 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448098 448301 . + . KQ414815.1 exonerate:protein2genome:local exon 448098 448301 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448098 448301 116 + . alignment_id 3 ; Query gi|805793799|ref|XP_012142565.1| ; Align 448098 149 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795896|ref|XP_012143135.1| PREDICTED: uncharacterized protein LOC100875381 [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 153 -> 243 Target range: 457141 -> 457411 154 : SerLeuTyrArgLysSerLeuTrpGlyPheLeuValLeuPheValSerIleProLeuS : 173 |||:!! !! ! ||| !!:: !! ! !:!!:!!.!!..!!!!:!:! !|||! SerMetIleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuP 457142 : tcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCT : 457199 174 : erSerProAlaLeuAspPheIleAlaProLeuAsnGluThrArgThrLysLeuProLe : 192 ! !! ! !||||||.!!:!:!.!||||||||||||:!!||| !! ! !! heProIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTy 457200 : TTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATA : 457256 193 : uPheLysLeuAsnTyrIleValAspMetArgAspHisPheTyrIleValTyrLeuHis : 211 !.!!! ! !.!.|||.!!|||||||||!:! ! :!!.!.:!! !:!! ! !||| rLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHis 457257 : CCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCAC : 457313 212 : SerAlaTrpCysSerLeuIleIleValLeuIleValThrThrMetAspSerLeuTyrM : 231 ! ! ! !||| !|||||| !.! !! :!!|||.!!! !!:|||||| !! IleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuI 457314 : ATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTA : 457373 232 : etValIleIleHisTyrAlaCysGlyLeuPheAlaLeu : 243 !:..!! !:!!! :!!!.!|||||||||||| !||| leThrAsnValLeuHisValCysGlyLeuPheLysLeu 457374 : TAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: gi|805795896|ref|XP_012143135.1| 153 243 . KQ414815.1 457141 457411 + 112 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457142 457411 112 + . gene_id 1 ; sequence gi|805795896|ref|XP_012143135.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457142 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457142 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457142 457411 112 + . alignment_id 1 ; Query gi|805795896|ref|XP_012143135.1| ; Align 457142 154 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795896|ref|XP_012143135.1| PREDICTED: uncharacterized protein LOC100875381 [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 159 -> 243 Target range: 481983 -> 482235 160 : LeuTrpGlyPheLeuValLeuPheValSerIleProLeuSerSerProAlaLeuAspP : 179 :!!!:: !! :!!:!!:!!.!.:!! ! !! !:!!|||||| !!.!|||||| IleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspV 481984 : ATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACG : 482041 180 : heIleAlaProLeuAsnGluThrArgThrLysLeuProLeuPheLysLeuAsnTyrIl : 198 !!|||!.!||||||||||||||||||||| ! ! ! !! ! ! ..!:!!.!.|||.! alIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPh 482042 : TCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTT : 482098 199 : eValAspMetArgAspHisPheTyrIleValTyrLeuHisSerAlaTrpCysSerLeu : 217 !:!!|||..!!:! ! :!!! !.!!:!! !!!|||..! !!::! !! !||| eIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeu 482099 : CATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTC : 482155 218 : IleIleValLeuIleValThrThrMetAspSerLeuTyrMetValIleIleHisTyrA : 237 :!!:!!!.! !|||:!!..! !!!:!!:!!!||| !:!::!! :!!.!.:!!| ValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisA 482156 : GTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACG : 482215 238 : laCysGlyLeuPheAlaLeu : 243 ||....!!||||||.!!||| laAlaSerLeuPheThrLeu 482216 : CTGCAAGCTTGTTCACCCTT : 482235 vulgar: gi|805795896|ref|XP_012143135.1| 159 243 . KQ414815.1 481983 482235 + 110 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481984 482235 110 + . gene_id 2 ; sequence gi|805795896|ref|XP_012143135.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481984 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481984 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481984 482235 110 + . alignment_id 2 ; Query gi|805795896|ref|XP_012143135.1| ; Align 481984 160 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795896|ref|XP_012143135.1| PREDICTED: uncharacterized protein LOC100875381 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 547 Query range: 158 -> 406 Target range: 1243860 -> 1242649 159 : SerLeuTrpGlyPheLeuValLeuPheValSerIleProLeuSerSerProAlaLe : 177 !!!|||!:: !|||! !:!!:!!||||||! !.!!||||||! ! !!||| !|| ThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleLe 1243860 : ACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATT : 1243806 178 : uAspPheIleAlaProLeuAsnGluThrArgThrLysLeuProLeuPheLysLeuA : 196 |||| !!:!!:!!||||||||||||||||||:!!::!:!! :::...||||||. uAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuG 1243805 : GGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgc : 1243749 197 : snTyrIleValAspMetArgAspHisPheTyrIleValTyrLeuHisSerAlaTrp : 214 ..|||:!: !!||||||... :::|||||| :::|||:!!:!!!!!!.!||| lnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrp 1243748 : aataccTGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGCTGG : 1243695 215 : CysSerLeuIleIleValLeuIleValThrThrMetAspSerLeuTyrMetValIl : 233 ||||||!!!!!:! !:!!:!!:!!:!!! !|||!!:|||:!!||||||:!!||||| CysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValValIl 1243694 : TGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAAT : 1243638 234 : eIleHisTyrAlaCysGlyLeuPheAlaLeuCys{Gl} >>>> Target Intr : 245 |||||||:!!.!!|||||||||||||||:!!|||{||} 318 bp eIleHisHisThrCysGlyLeuPheAlaValCys{Gl}++ 1243637 : CATTCATCACACGTGTGGCTTATTCGCTGTTTGC{GG}gt................ : 1243598 246 : on 1 >>>> {y}TyrGlnValLysLysAlaThrGluMetValGlyProLysAla : 259 {|}! !||||||!.. ! ! !... ! ! ... ++{y}SerGlnValSerAspLysTyrSerTyrAsnIle***SerLeu 1243597 : .........ag{C}TCTCAAGTTAGTGATAAATACAGTTACAATATTtagtcgtta : 1243242 260 : IleProThrIleAsnThrLysAlaGlnPheAsnArgCysValIleThrLeuTyrGl : 278 ... :::..!||| !! ! ! ::: ... .. LysLysLysLysLys***ArgValGlnThrPheLeuArgPheValIlePheIleHi 1243241 : aaaaaaaaaaagaaataacgagTACAAACATTTCTAAGGttcgttatttttataca : 1243185 279 : uAlaIleArgPheTyrGluTyrMetAspGluSerThrArgThrSerTyrLeuPheG : 297 . !.!!!!!! !!:!!!: !!!::!!|||! !|||!!!|||!!!|||||||||| sAspPheSerSerPheAspThrIleAsnGluIleThrSerThrCysTyrLeuPheG 1243184 : tgATTTCAGCTCTTTCGATACCATAAACGAAATCACTAGCACATGTTACTTGTTTC : 1243128 298 : lnValGlyLeuAsnMetIleGlyIleThrValThrAlaValGln >>>> Targe : 312 ||||||||||||||||||||||||||!:!||||||:!!|||! ! lnValGlyLeuAsnMetIleGlyIleSerValThrSerValLeu++ 1243127 : AAGTCGGACTTAATATGATCGGTATTAGCGTGACGTCTGTTCTAgt.......... : 1243081 313 : t Intron 2 >>>> AlaValMetTyrIleAspArgProGluGluAlaPheArg : 324 77 bp ||| !!!!: !!:!!||||||||||||||| ! !||| ++AlaPheIleAsnLeuAspArgProGluGluPheAlaArg 1243080 : ...............agGCCTTTATAAATCTAGATCGGCCTGAAGAATTTGCCAGA : 1242970 325 : IleValMetPheLeuLeuGlyGlnGlnPheHisLeuTyrAlaLeuSerLeuProGl : 343 |||!.! ||||||:!!!.!||||||.!!||||||! !.!:!!|||:!!||||| IleAlaCysPheLeuIleAlaGlnGlnLeuHisLeuLeuValIleSerValProGl 1242969 : ATTGCTTGTTTCCTTATAGCTCAGCAACTCCACTTGTTAGTCATTAGTGTACCAGG : 1242913 344 : yGlnValLeuIleAspArgGlyLeuGluLeuIleAsnAsp{Il} >>>> Targe : 357 ||||:!!:!!! |||!:!.!!! !:!!|||! !! !|||{||} yGlnIleIleThrAspGlnSerSerLysLeuThrIleAsp{Il}++ 1242912 : GCAGATCATCACGGATCAAAGTTCAAAGTTGACCATTGAC{AT}gt.......... : 1242867 358 : t Intron 3 >>>> {e}TyrPheSerLysTrpTyrGlnIleProValLysLeu : 369 72 bp {|}||| !|||! !|||||||||! !|||||| !:!! ++{e}TyrAsnSerMetTrpTyrGlnThrProValTrpIle 1242866 : ...............ag{A}TATAACTCGATGTGGTATCAAACACCGGTGTGGATT : 1242763 370 : GluLysValLeuHisIleMetGlnIleArgCysSerArgProCysThrLeuSerAl : 388 :!!|||:!!|||||||||:!:|||||||||! !.!!!:!||||||! !||| !|| GlnLysIleLeuHisIleValGlnIleArgSerGlyLysProCysLysLeuValAl 1242762 : CAAAAAATACTTCATATAGTACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGC : 1242706 389 : aGlyGlyLeuTyrGluMetAsnMetThrAsnPheGlySerValCysIleThrIle : 406 ||||||||||||||||||||||!!: !||||||||||||||| :::...||| aGlyGlyLeuTyrGluMetAsnIleGluAsnPheGlySerValArgValAsnIle 1242705 : AGGAGGATTATACGAAATGAACATTGAGAATTTTGGATCAGTACgtgttaatata : 1242650 vulgar: gi|805795896|ref|XP_012143135.1| 158 406 . KQ414851.1 1243860 1242649 - 547 M 86 258 S 0 2 5 0 2 I 0 314 3 0 2 S 1 1 M 66 198 5 0 2 I 0 73 3 0 2 M 45 135 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242650 1243860 547 - . gene_id 1 ; sequence gi|805795896|ref|XP_012143135.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1243601 1243860 . - . KQ414851.1 exonerate:protein2genome:local exon 1243601 1243860 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1243599 1243600 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243283 1243600 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1243283 1243284 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1243084 1243282 . - . KQ414851.1 exonerate:protein2genome:local exon 1243084 1243282 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1243082 1243083 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243007 1243083 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1243007 1243008 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242870 1243006 . - . KQ414851.1 exonerate:protein2genome:local exon 1242870 1243006 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242868 1242869 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242798 1242869 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1242798 1242799 . - . intron_id 2 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242650 1242797 . - . KQ414851.1 exonerate:protein2genome:local exon 1242650 1242797 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242650 1243860 547 - . alignment_id 1 ; Query gi|805795896|ref|XP_012143135.1| ; Align 1243861 159 258 ; Align 1243282 246 198 ; Align 1243007 312 135 ; Align 1242797 358 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795896|ref|XP_012143135.1| PREDICTED: uncharacterized protein LOC100875381 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 463 Query range: 163 -> 402 Target range: 1229473 -> 1228410 164 : LeuValLeuPheValSerIleProLeuSerSerProAlaLeuAspPheIleAlaPr : 182 :!! !:!!|||:!! !:!!||||||! !.!!||||||||||||.!!:!! !|| MetCysValPheLeuLeuValProLeuPheGlyProAlaLeuAspIleValLeuPr 1229473 : ATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCGTCCTTCC : 1229419 183 : oLeuAsnGluThrArgThrLysLeuProLeuPheLysLeuAsnTyrIleVal<->A : 200 |! !|||||||||||| !!::!! !! !||||||!:!:!!|||||||||:!! | oSerAsnGluThrArgProArgGlnGlnLeuPheArgValAsnTyrIleIlePheA 1229418 : ATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAATTTTCG : 1229362 201 : spMetArgAspHisPheTyrIleValTyrLeuHisSerAlaTrpCysSerLeuIle : 218 ||... !|||:!!|||!:! !||||||:!!!!.! ! !||||||!!!:!!:!! spGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPheTrpCysThrIleVal 1229361 : ACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACAATCGTT : 1229308 219 : IleValLeuIleValThrThr >>>> Target Intron 1 >>>> MetAsp : 227 :!!|||:!! !:!!! !||| 97 bp ...... LeuValMetAlaIleIleThr++ +-PheSer 1229307 : CTTGTAATGGCCATTATCACCgt.........................aattttct : 1229184 228 : SerLeuTyrMetValIleIleHisTyrAlaCysGlyLeuPheAlaLeuCysGlyTy : 246 ..! ! ! :!!.!!! ! !:! !||| !:!!! !::!! ! ! ! ! GluThrValGlyIlePheAsnThrPheIleCysLeuIleCysSerTyrGlnValLy 1229183 : gAAACGGTTGGAATATTCAATACATTCATCTGCTTGATTTGCAGCTACCAAGTGAA : 1229127 247 : rGlnValLysLysAlaThrGluMetValGlyProLysAlaIleProThrIleAsnT : 265 :!!!.!! !:!! !..!!!: :!!! ! !!.. !||| !! !! !:!!| sLysAlaThrGluPheValAspSerIleAspAsnSerAsnIleSerGlnAsnHisT 1229126 : AAAAGCAACAGAATTTGTGGACTCAATCGACAACAGTAACATTTCTCAAAATCATA : 1229070 266 : hrLysAlaGlnPheAsnArgCysValIleThrLeuTyrGluAlaIle{Ar} >>> : 281 || ! ! !||||||!!.|||||||||! !! !! ! !!:!!||||||{!:} hrHisGluGlnPheLysArgCysValThrMetHisAspLysAlaIle{Ly}++ 1229069 : CACACGAACAGTTCAAACGATGCGTGACTATGCACGATAAAGCTATC{AA}gt... : 1229018 282 : > Target Intron 2 >>>> {g}PheTyrGluTyrMetAspGluSerThrAr : 291 95 bp {!}||||||!!: !:!::!!||||||!:!|| ++{s}PheTyrAspIleLeuAsnGluSerSerAr 1229017 : ......................ag{G}TTTTACGATATTCTAAACGAGAGCAGTCG : 1228897 292 : gThrSerTyrLeuPheGlnValGlyLeuAsnMetIleGlyIleThrValThrAlaV : 310 |!.!|||||||||.!!||||||||||||!:!|||!!:.!!|||!:!|||||||||| gAsnSerTyrLeuLeuGlnValGlyLeuSerMetMetSerIleSerValThrAlaV 1228896 : AAACAGCTACTTGCTTCAGGTTGGATTGAGCATGATGAGCATCAGCGTGACTGCTG : 1228840 311 : alGln >>>> Target Intron 3 >>>> AlaValMetTyrIleAspArgP : 319 ||||| 79 bp !:!!:!: !:!:||||||| alGln+- ++IleMetLeuAlaLeuAspArgP 1228839 : TGCAGgc.........................agATAATGCTCGCCCTGGATAGAC : 1228734 320 : roGluGluAlaPheArgIleValMetPheLeuLeuGlyGlnGlnPheHisLeuTyr : 337 ||...||||||.!!||| ! !:!! !!||| !||| !||||||||||||!:! roSerGluAlaIleArgTyrSerValValLeuGlyGlyAlaGlnPheHisLeuPhe 1228733 : CGAGCGAAGCTATTAGATATTCTGTGGTTCTTGGAGGTGCGCAATTTCATTTGTTC : 1228680 338 : AlaLeuSerLeuProGlyGlnValLeuIleAspArgGlyLeuGluLeuIleAsnAs : 356 !:!!|||||||||||||||..!|||:!:|||!.! !! ! !|||! ||||| IleIleSerLeuProGlyGlnThrLeuValAspHisCysThrMetLeuThrAsnAs 1228679 : ATCATTAGCTTACCTGGACAGACACTCGTGGATCATTGTACCATGCTAACGAACGA : 1228623 357 : p{Il} >>>> Target Intron 4 >>>> {e}TyrPheSerLysTrpTyrG : 364 |{||} 72 bp {|}|||! !|||! !||||||: p{Il}++ ++{e}TyrSerSerThrTrpTyrL 1228622 : T{AT}gt.........................ag{A}TACTCTTCCACGTGGTATA : 1228527 365 : lnIleProValLysLeuGluLysValLeuHisIleMetGlnIleArgCysSerArg : 382 !!:!! !!!.!|||!!!:!!::!|||:!!:!!!!:||||||||||||..! !!:! ysValSerAlaLysPheGlnArgValIleTyrMetMetGlnIleArgAlaLeuLys 1228526 : AGGTATCGGCAAAATTTCAACGAGTAATTTACATGATGCAAATAAGGGCTCTAAAG : 1228473 383 : ProCysThrLeuSerAlaGlyGlyLeuTyrGluMetAsnMetThrAsnPheGlySe : 401 ||||||! !|||!!!||||||||||||||||||||||||||| !||||||!.!!: ProCysIleLeuThrAlaGlyGlyLeuTyrGluMetAsnMetGluAsnPheAlaAs 1228472 : CCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGAACATGGAGAACTTTGCAAA : 1228416 402 : rVal : 402 !||| nVal 1228415 : CGTT : 1228411 vulgar: gi|805795896|ref|XP_012143135.1| 163 402 . KQ414851.1 1229473 1228410 - 463 M 36 108 G 0 3 M 26 78 5 0 2 I 0 93 3 0 2 M 55 165 S 0 2 5 0 2 I 0 91 3 0 2 S 1 1 M 30 90 5 0 2 I 0 75 3 0 2 M 45 135 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1229473 463 - . gene_id 2 ; sequence gi|805795896|ref|XP_012143135.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1229285 1229473 . - . KQ414851.1 exonerate:protein2genome:local exon 1229285 1229473 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1229283 1229284 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1229188 1229284 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1229188 1229189 . - . intron_id 0 ; splice_site "aa" KQ414851.1 exonerate:protein2genome:local cds 1229021 1229187 . - . KQ414851.1 exonerate:protein2genome:local exon 1229021 1229187 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1229019 1229020 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1228926 1229020 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1228926 1228927 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228835 1228925 . - . KQ414851.1 exonerate:protein2genome:local exon 1228835 1228925 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228833 1228834 . - . intron_id 3 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1228756 1228834 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1228756 1228757 . - . intron_id 2 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228619 1228755 . - . KQ414851.1 exonerate:protein2genome:local exon 1228619 1228755 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228617 1228618 . - . intron_id 4 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1228547 1228618 . - . intron_id 4 KQ414851.1 exonerate:protein2genome:local splice3 1228547 1228548 . - . intron_id 3 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228411 1228546 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228546 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1229473 463 - . alignment_id 2 ; Query gi|805795896|ref|XP_012143135.1| ; Align 1229474 164 108 ; Align 1229363 200 78 ; Align 1229188 226 165 ; Align 1228925 282 90 ; Align 1228756 312 135 ; Align 1228546 358 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795896|ref|XP_012143135.1| PREDICTED: uncharacterized protein LOC100875381 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 321 Query range: 280 -> 402 Target range: 1233762 -> 1233246 281 : ArgPheTyrGluTyrMetAspGluSerThrArgThrSerTyrLeuPheGlnValGl : 299 |||||||||!!: !:!::!!||||||!:!|||!.!|||||||||.!!|||||||| ArgPheTyrAspIleLeuAsnGluSerSerArgAsnSerTyrLeuIleGlnValGl 1233762 : AGGTTTTACGATATTCTAAACGAGAGCAGTCGAAATAGCTACTTGATTCAGGTTGG : 1233708 300 : yLeuAsnMetIleGlyIleThrValThrAlaValGln >>>> Target Intro : 312 ||||||||||!!:||||||!:!||||||||||||||| 80 bp yLeuAsnMetMetGlyIleSerValThrAlaValGln+- 1233707 : ATTGAACATGATGGGCATTAGCGTGACCGCTGTCCAGgc................. : 1233667 313 : n 1 >>>> AlaValMetTyrIleAspArgProGluGluAlaPheArgIleValM : 327 .!!|||:!: :!:|||||||||! !||||||.!!||| !!.!: ++ThrValLeuThrLeuAspArgProAlaGluAlaLeuArgCysAlaV 1233666 : ........agACAGTCCTCACACTGGACAGGCCGGCAGAAGCTCTTAGATGTGCTG : 1233544 328 : etPheLeuLeuGlyGlnGlnPheHisLeuTyrAlaLeuSerLeuProGlyGlnVal : 345 !!||||||:!!!.!:!!||||||||||||!:! !:!!|||||||||||||||..! alPheLeuValAlaGluGlnPheHisLeuPheIleIleSerLeuProGlyGlnThr 1233543 : TGTTCCTTGTAGCGGAGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACA : 1233490 346 : LeuIleAspArgGlyLeuGluLeuIleAsnAspIleTyrPheSerLys{T} >>> : 362 |||:!:|||!.! !! !:!!||| !!.|||!!:||| !!! ! !!{ } LeuValAspHisCysThrLysLeuSerLysAspMetTyrVal******{A}++ 1233489 : CTCGTGGATCATTGTACGAAACTATCGAAGGATATGTACGTTTAATAA{C}gt... : 1233436 363 : > Target Intron 2 >>>> {rp}TyrGlnIleProValLysLeuGluLysV : 372 70 bp {!!}|||:!!:!!|||!.!|||!!!:!!::!| --{rg}TyrLysValProAlaLysPheGlnArgV 1233435 : ......................gt{GG}TATAAAGTACCGGCAAAATTTCAGCGAG : 1233339 373 : alLeuHisIleMetGlnIleArgCysSerArgProCysThrLeuSerAlaGlyGly : 390 ||:!!:!!! ||||||||||||..! !!:!||||||..!|||!!!||||||||| alIleTyrThrMetGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGly 1233338 : TAATTTACACGATGCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGA : 1233285 391 : LeuTyrGluMetAsnMetThrAsnPheGlySerVal : 402 |||||||||||||||||| !||||||!.!!:!||| LeuTyrGluMetAsnMetGluAsnPheAlaAsnVal 1233284 : TTGTATGAAATGAACATGGAGAACTTTGCAAACGTT : 1233247 vulgar: gi|805795896|ref|XP_012143135.1| 280 402 . KQ414851.1 1233762 1233246 - 321 M 31 93 5 0 2 I 0 76 3 0 2 M 50 150 S 0 1 5 0 2 I 0 66 3 0 2 S 1 2 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233247 1233762 321 - . gene_id 3 ; sequence gi|805795896|ref|XP_012143135.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233670 1233762 . - . KQ414851.1 exonerate:protein2genome:local exon 1233670 1233762 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233668 1233669 . - . intron_id 1 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1233590 1233669 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233590 1233591 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233439 1233589 . - . KQ414851.1 exonerate:protein2genome:local exon 1233439 1233589 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233437 1233438 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233369 1233438 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1233369 1233370 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local cds 1233247 1233368 . - . KQ414851.1 exonerate:protein2genome:local exon 1233247 1233368 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233247 1233762 321 - . alignment_id 3 ; Query gi|805795896|ref|XP_012143135.1| ; Align 1233763 281 93 ; Align 1233590 312 150 ; Align 1233367 363 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795896|ref|XP_012143135.1| PREDICTED: uncharacterized protein LOC100875381 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 297 Query range: 118 -> 245 Target range: 1234569 -> 1234059 119 : PheLeuAsnIlePheAsnArgMetAlaGluLeuTrpGluIleSerGluIleAsnGl : 137 ||| ...::::::::!! !:!!.!!..! !|||||| ! !..!!!:|||! PheGlnLysMetTyrAspLeuValThrArgGluTrpGluGlnLeuArgMetAsnAs 1234569 : tttcaaaaaatgtatgaTCTTGTGACAAGAGAGTGGGAGCAGTTGAGGATGAACGA : 1234515 138 : yGluLeuHisValLeuSerGluIleThrGluGluGlySerArgMetGlySerLeuT : 156 !|||||||||||||||..!!!:|||||| !:!!|||.!!!:!:!:!.!..!!!!| pGluLeuHisValLeuGluAspIleThrMetGlnGlyGlyLysLeuAlaGlnPheT 1234514 : CGAGTTGCATGTGCTTGAAGACATTACCATGCAAGGTGGTAAACTCGCGCAATTCT : 1234458 157 : yrArg{L} >>>> Target Intron 1 >>>> {ys}SerLeuTrpGlyPhe : 163 |||||{!} 126 bp {!.}!!!||| !..!||| yrArg{A}++ ++{sn}ThrLeuLeuSerPhe 1234457 : ACAGA{A}gt.........................ag{AT}ACATTACTGTCCTTC : 1234311 164 : LeuValLeuPheValSerIleProLeuSerSerProAlaLeuAspPheIleAlaPr : 182 :!!|||:!!|||:!! !:!!|||||| !! !||| !|||||| !!:!! !|| MetValValPheLeuLeuValProLeuValPheProPheLeuAspValValLeuPr 1234310 : ATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGTCGTCCTTCC : 1234254 183 : oLeuAsnGluThrArgThrLysLeuProLeuPheLysLeuAsnTyrIle<->ValA : 200 |||||||||||||||| !!::!! !! ! !|||!:!:!!||||||:!! !!| oLeuAsnGluThrArgProArgGlnGlnGlyPheArgValAsnTyrLeuTyrPheA 1234253 : GTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTATATTTCG : 1234197 201 : spMetArgAspHisPheTyrIleValTyrLeuHisSerAlaTrpCysSerLeuIle : 218 || !|||:!!|||!:!! !||||||!!!!!.! !|||||| !!:!!:!!:!! spGluAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaValVal 1234196 : ACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAGTCGTT : 1234143 219 : IleValLeuIleValThrThrMetAspSerLeuTyrMetValIleIleHisTyrAl : 237 :!!|||:!!|||:!!! !|||:!:|||||||||||||||:!!|||||||||:!!|| ValValMetIleIleIleThrValAspSerLeuTyrMetIleIleIleHisHisAl 1234142 : GTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGATAATAATTCACCATGC : 1234086 238 : aCysGlyLeuPheAlaLeuCysGly : 245 | !!|||:!!||||||:!!|||||| aSerGlyMetPheAlaValCysGly 1234085 : CAGCGGAATGTTCGCCGTGTGCGGG : 1234060 vulgar: gi|805795896|ref|XP_012143135.1| 118 245 . KQ414851.1 1234569 1234059 - 297 M 39 117 S 0 1 5 0 2 I 0 122 3 0 2 S 1 2 M 40 120 G 0 3 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234569 297 - . gene_id 4 ; sequence gi|805795896|ref|XP_012143135.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1234452 1234569 . - . KQ414851.1 exonerate:protein2genome:local exon 1234452 1234569 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234450 1234451 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1234326 1234451 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1234326 1234327 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1234060 1234325 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234325 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234569 297 - . alignment_id 4 ; Query gi|805795896|ref|XP_012143135.1| ; Align 1234570 119 117 ; Align 1234324 159 120 ; Align 1234201 199 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795896|ref|XP_012143135.1| PREDICTED: uncharacterized protein LOC100875381 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 190 Query range: 150 -> 245 Target range: 1224312 -> 1224024 151 : ArgMetGlySerLeuTyrArgLysSerLeuTrpGlyPheLeuValLeuPheValSe : 169 |||... :::::: ||||||||| ! !!|||:!!:!!!:!:!!|| ArgGlnLysLeuIlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSe 1224312 : agacaaaaattaattttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAG : 1224258 170 : rIleProLeuSerSerProAlaLeuAspPheIleAlaProLeuAsnGluThrArgT : 188 |.!!||||||! !!:!|||!.!|||||| !!:!!||||||||||||||||||||| rPheProLeuIleAsnProValLeuAspValValAlaProLeuAsnGluThrArgP 1224257 : CTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGAC : 1224201 189 : hrLysLeuProLeuPheLysLeuAsnTyrIle<->ValAspMetArgAspHisPhe : 205 !!::: !! !|||.!! !:!!!:!|||||| :!!||| ! !!!:|||||| roArgArgLeuLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPhe 1224200 : CCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTT : 1224147 206 : TyrIleValTyrLeuHisSerAlaTrpCysSerLeuIleIleValLeuIleValTh : 224 |||! !||| !!!!!||| ! ! !! !:!! ! !! !:!!!!::!!! TyrSerValAsnPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIl 1224146 : TATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAAT : 1224090 225 : rThrMetAspSerLeuTyrMetValIleIleHisTyrAlaCysGlyLeuPheAlaL : 243 !.!!:!!|||! !||||||!!:..!|||||| !:!! !|||||||||||||||: eAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaV 1224089 : CGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAG : 1224033 244 : euCysGly : 245 !!|||||| alCysGly 1224032 : TGTGTGGG : 1224025 vulgar: gi|805795896|ref|XP_012143135.1| 150 245 . KQ414851.1 1224312 1224024 - 190 M 48 144 G 0 3 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224312 190 - . gene_id 5 ; sequence gi|805795896|ref|XP_012143135.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224312 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224312 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224312 190 - . alignment_id 5 ; Query gi|805795896|ref|XP_012143135.1| ; Align 1224313 151 144 ; Align 1224166 199 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795896|ref|XP_012143135.1| PREDICTED: uncharacterized protein LOC100875381 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 187 Query range: 32 -> 118 Target range: 1246693 -> 1246324 33 : GluLeuProTyrPheLysValPheLysLysTyrLeuIleProLeuGlyGlnTyrPr : 51 !!:!!!||||||!:! ||||||... :::::! !|||||||||||||| AspPheProTyrTyrGlySerPheLysAsnAsnMetLeuPheLeuGlyGlnTyrPr 1246693 : GACTTTCCTTATTACggatcgtttaaaaataatatgctATTCTTGGGACAATATCC : 1246639 52 : oTyrGlnThrGluArgSerHisLysIleAsnValThrIleIleValPheSerThrT : 70 |||||||:!!:!! :::... ...||| |||:!:!!:|||! !!!! !| oTyrGlnSerLysLeuThrGluIlePheAsnGluThrLeuMetValCysThrTyrT 1246638 : ATATCAATCGAAATtgactgaaatatttaatgaaacCCTGATGGTATGCACCTATA : 1246582 71 : hrSerLeuLeuIleProSer >>>> Target Intron 1 >>>> MetLeuG : 79 ||||||||:!!||| !..! 111 bp :!::!!| hrSerLeuIleIleLeuGln++ ++ValIleG 1246581 : CGAGTCTCATAATTTTACAGgt.........................agGTTATAC : 1246444 80 : lnPhePheLeuSerMetArgGluArgAspMetAspThrMetMetGluCysValPro : 97 ||.!.||| !:!!!!:! !! !!:!|||!!:|||.!!! !|||||| !|||||| lnMetPheGluAlaIleIleValLysAspIleAspAlaThrMetGluThrValPro 1246443 : AAATGTTCGAAGCGATAATTGTAAAGGACATCGATGCAACGATGGAAACCGTACCT : 1246390 98 : IleIleValThrLeuLeuValIleMetIleLysIleLeuAsnHisAsnIleAsnAr : 116 :!!||||||||| !|||||| :::||||||:::|||||||||! !||||||!: ValIleValThrGluLeuValCysValIleLysLeuLeuAsnHisIleIleAsnLy 1246389 : GTAATAGTCACCGAATTGgtttgtgtaataaaattgctGAATCATATCATCAATAA : 1246333 117 : gGlnLys : 118 ! !||| sGlyLys 1246332 : AGGAAAG : 1246325 vulgar: gi|805795896|ref|XP_012143135.1| 32 118 . KQ414851.1 1246693 1246324 - 187 M 44 132 5 0 2 I 0 107 3 0 2 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1246325 1246693 187 - . gene_id 6 ; sequence gi|805795896|ref|XP_012143135.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1246562 1246693 . - . KQ414851.1 exonerate:protein2genome:local exon 1246562 1246693 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1246560 1246561 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1246451 1246561 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1246451 1246452 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1246325 1246450 . - . KQ414851.1 exonerate:protein2genome:local exon 1246325 1246450 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1246325 1246693 187 - . alignment_id 6 ; Query gi|805795896|ref|XP_012143135.1| ; Align 1246694 33 132 ; Align 1246451 77 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795896|ref|XP_012143135.1| PREDICTED: uncharacterized protein LOC100875381 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 174 Query range: 159 -> 245 Target range: 1240082 -> 1239821 160 : LeuTrpGlyPheLeuValLeuPheValSerIleProLeuSerSerProAlaLeuAs : 178 |||!::... ||| :::|||::: !:!!|||::: ||| ||||| LeuPheSerValLeuPheIlePheLeuValValProIlePheProProLeuLeuAs 1240082 : TTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcctcctcttctggA : 1240028 179 : pPheIleAlaProLeuAsnGluThrArgThrLysLeuProLeuPheLysLeuAsnT : 197 |.!!:!! !||||||||||||||||||.!!::: :::||||||:::|||| pIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIlePheLysValAsnT 1240027 : CATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatattcaaagttaaTT : 1239971 198 : yr<->IleValAspMetArgAspHisPheTyrIleValTyrLeuHisSerAlaTrp : 214 || |||:!!|||! ! !!!:!!. ! |||..!|||!!!|||! !:!!||| yrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPheHisLeuSerTrp 1239970 : ACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTTCACTTGTCTTGG : 1239917 215 : CysSerLeuIleIleValLeuIleValThrThrMetAspSerLeuTyrMetValIl : 233 !!!:!!! !:!!! !:!! !||| !!:! !!:! !:!!|||:!::!!:! ThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIleTyrValLeuLe 1239916 : ACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGTCCTTCT : 1239860 234 : eIleHisTyrAlaCysGlyLeuPheAlaLeuCysGly : 245 !||||||:!!.!! !!||||||||||||:!!..!||| uIleHisHisThrSerGlyLeuPheAlaValAlaGly 1239859 : TATTCATCATACCAGCGGTCTGTTTGCTGTGGCTGgg : 1239822 vulgar: gi|805795896|ref|XP_012143135.1| 159 245 . KQ414851.1 1240082 1239821 - 174 M 38 114 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240082 174 - . gene_id 7 ; sequence gi|805795896|ref|XP_012143135.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239822 1240082 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240082 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240082 174 - . alignment_id 7 ; Query gi|805795896|ref|XP_012143135.1| ; Align 1240083 160 114 ; Align 1239966 198 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795896|ref|XP_012143135.1| PREDICTED: uncharacterized protein LOC100875381 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 310 -> 353 Target range: 1222717 -> 1222588 311 : GlnAlaValMetTyrIleAspArgProGluGluAlaPheArgIleValMetPheLe : 329 |||..!:!!||| !!||||||||||||!!:||| !.!!|||:!!!.!||||||:! GlnCysIleMetAsnIleAspArgProAspGluLeuIleArgLeuAlaMetPheVa 1222717 : CAGTGCATTATGAACATCGACCGACCTGACGAACTCATCAGGCTTGCGATGTTTGT : 1222663 330 : uLeuGlyGlnGlnPheHisLeuTyrAlaLeuSerLeuProGlyGlnValLeuIleA : 348 !:!!!..|||:::||||||||| !||||||||||||||||||:!!|||:!!| lValAlaGlnLysPheHisLeuLeuIleLeuSerLeuProGlyGlnMetLeuLeuA 1222662 : CGTAGctcagaaatttcatttgctcATCCTTAGTTTACCTGGGCAAATGTTGTTAG : 1222606 349 : spArgGlyLeuGluLeu : 353 ||!.!.!!|||! !||| spHisSerLeuGlyLeu 1222605 : ATCATAGTTTAGGATTG : 1222589 vulgar: gi|805795896|ref|XP_012143135.1| 310 353 . KQ414851.1 1222717 1222588 - 130 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222589 1222717 130 - . gene_id 8 ; sequence gi|805795896|ref|XP_012143135.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1222589 1222717 . - . KQ414851.1 exonerate:protein2genome:local exon 1222589 1222717 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222589 1222717 130 - . alignment_id 8 ; Query gi|805795896|ref|XP_012143135.1| ; Align 1222718 311 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795896|ref|XP_012143135.1| PREDICTED: uncharacterized protein LOC100875381 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 275 -> 357 Target range: 1239477 -> 1238684 276 : LeuTyrGluAlaIleArgPheTyrGluTyrMetAspGluSerThrArgThrSerTy : 294 |||! !.!.|||.!!|||! !|||.!. !:!!.!.:!!|||!:! ! !||||| LeuCysHisAlaPheArgCysTyrAsnValLeuGlnLysSerSerValLeuSerTy 1239477 : CTTTGTCATGCTTTCAGGTGTTACAATGTTCTGCAGAAAAGCAGTGTGCTCAGTTA : 1239423 295 : rLeuPheGlnValGlyLeuAsnMetIleGlyIleThrValThrAlaValGlnAlaV : 313 ||||||||||||||||||||||!!::!:|||:!!!:!|||:!!|||||||||... rLeuPheGlnValGlyLeuAsnIleValGlyLeuSerValSerAlaValGlnValA 1239422 : CTTGTTTCAAGTTGGATTAAACATAGTGGGCCTTAGTGTGTCAGCTGTTCAAgtaa : 1239366 314 : alMetTyrIleAspArgProGluGluAlaPheArgIleValMetPheLeuLeuGly : 331 ::: ::: ..! !! ! ! !! ! !||| !! !!. !! !||| rgIleIleLeuLeuAsnGlyGlyProAsnSerSerIleGlnAsnLeuArgHisGly 1239365 : gaataattttgttgaATGGTGGACCAAATTCTTCGATCCAAAATTTAAGACACGGC : 1239312 332 : GlnGlnPheHisLeuTyr{Al} >>>> Target Intron 1 >>>> {a}Le : 339 :!!:!!||| ! :!!|||{ } 547 bp {!}:! LysGluPheLysIleTyr{Hi}-+ +-{s}Il 1239311 : AAGGAATTCAAAATATAT{CA}tt.........................at{C}AT : 1238741 340 : uSerLeuProGlyGlnValLeuIleAspArgGlyLeuGluLeuIleAsnAspIle : 357 !|||:!!|||||||||||||||||||||!.! !!:!!|||||| !||||||!!: eSerIleProGlyGlnValLeuIleAspHisCysValGluLeuSerAsnAspMet 1238740 : CAGTATACCTGGACAGGTGCTTATAGATCATTGTGTGGAGCTGTCAAACGACATG : 1238685 vulgar: gi|805795896|ref|XP_012143135.1| 275 357 . KQ414851.1 1239477 1238684 - 113 M 62 186 S 0 2 5 0 2 I 0 543 3 0 2 S 1 1 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1238685 1239477 113 - . gene_id 9 ; sequence gi|805795896|ref|XP_012143135.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1239290 1239477 . - . KQ414851.1 exonerate:protein2genome:local exon 1239290 1239477 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1239288 1239289 . - . intron_id 1 ; splice_site "TT" KQ414851.1 exonerate:protein2genome:local intron 1238743 1239289 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1238743 1238744 . - . intron_id 0 ; splice_site "AT" KQ414851.1 exonerate:protein2genome:local cds 1238685 1238742 . - . KQ414851.1 exonerate:protein2genome:local exon 1238685 1238742 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1238685 1239477 113 - . alignment_id 9 ; Query gi|805795896|ref|XP_012143135.1| ; Align 1239478 276 186 ; Align 1238742 339 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 395 Query range: 291 -> 428 Target range: 1233762 -> 1233126 292 : LysPheTyrGluTyrMetGluGluSerThrArgIleGlyTyrLeuPheGlnValGl : 310 !:!||||||!!: !:!:.!.||||||!:!|||! !.!!||||||.!!|||||||| ArgPheTyrAspIleLeuAsnGluSerSerArgAsnSerTyrLeuIleGlnValGl 1233762 : AGGTTTTACGATATTCTAAACGAGAGCAGTCGAAATAGCTACTTGATTCAGGTTGG : 1233708 311 : yPheAsnMetIleGlyIleThrAlaThrAlaValGln >>>> Target Intro : 323 |!!.||||||!!:||||||!:!!.!|||||||||||| 80 bp yLeuAsnMetMetGlyIleSerValThrAlaValGln+- 1233707 : ATTGAACATGATGGGCATTAGCGTGACCGCTGTCCAGgc................. : 1233667 324 : n 1 >>>> AlaValAlaAsnPheAspArgProAlaGluAlaPheArgIleValM : 338 .!!||| !!...!.||||||||||||||||||.!!||| !!.!: ++ThrValLeuThrLeuAspArgProAlaGluAlaLeuArgCysAlaV 1233666 : ........agACAGTCCTCACACTGGACAGGCCGGCAGAAGCTCTTAGATGTGCTG : 1233544 339 : etPheLeuCysGlyGlnGlnPheHisLeuTyrAlaLeuSerLeuProGlyGlnGlu : 356 !!|||||| !.!:!!||||||||||||!:! !:!!||||||||||||||| ! alPheLeuValAlaGluGlnPheHisLeuPheIleIleSerLeuProGlyGlnThr 1233543 : TGTTCCTTGTAGCGGAGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACA : 1233490 357 : LeuMetAspArgSerAlaGlyLeuIleAspAla{Il} >>>> Target Intro : 368 |||:!!|||!.!!!!.!! !||| ! ! !{||} 70 bp LeuValAspHisCysThrLysLeuSerLysAsp{Il}++ 1233489 : CTCGTGGATCATTGTACGAAACTATCGAAGGAT{AT}gt................. : 1233450 369 : n 2 >>>> {e}TyrSerSerLysTrpTyrGlnThrProIleLysPheGlnArgV : 383 {|}|||||||||! !||||||:!!..!||| !||||||||||||| ++{e}TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgV 1233449 : ........ag{A}TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAG : 1233339 384 : alLeuGluIleMetGlnIleArgCysSerArgProCysLysLeuThrAlaGlyGly : 401 ||:!! ! ! ||||||||||||..! !!:!|||||| ||||||||||||||| alIleTyrThrMetGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGly 1233338 : TAATTTACACGATGCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGA : 1233285 402 : LeuTyrGluMetAsnIleGluAsnPheGlySer >>>> Target Intron 3 : 413 |||||||||||||||!!:|||||||||!.!!:! 75 bp LeuTyrGluMetAsnMetGluAsnPheAlaAsn++ 1233284 : TTGTATGAAATGAACATGGAGAACTTTGCAAACgt..................... : 1233247 414 : >>>> MetIleLysThrCysValSerTyrPheThrValLeuLeuSerLeuArg : 428 .!!|||||||||:!!||||||||||||:!!|||:!!||||||||| ++ThrPheLysThrCysMetSerTyrPheThrMetLeuMetSerLeuArg 1233246 : ....agaCATTCAAAACGTGCATGTCATACTTCACAATGCTGATGTCACTTAGA : 1233127 vulgar: gi|805795905|ref|XP_012143137.1| 291 428 . KQ414851.1 1233762 1233126 - 395 M 31 93 5 0 2 I 0 76 3 0 2 M 45 135 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 44 132 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233127 1233762 395 - . gene_id 1 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233670 1233762 . - . KQ414851.1 exonerate:protein2genome:local exon 1233670 1233762 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233668 1233669 . - . intron_id 1 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1233590 1233669 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233590 1233591 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233453 1233589 . - . KQ414851.1 exonerate:protein2genome:local exon 1233453 1233589 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233451 1233452 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233383 1233452 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1233383 1233384 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233250 1233382 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233382 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 2 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233127 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233127 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233127 1233762 395 - . alignment_id 1 ; Query gi|805795905|ref|XP_012143137.1| ; Align 1233763 292 93 ; Align 1233590 323 135 ; Align 1233382 369 132 ; Align 1233175 413 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 271 Query range: 311 -> 419 Target range: 1222747 -> 1222352 312 : AsnMetIleGlyIleThrAlaThrAlaValGlnAlaValAlaAsnPheAspArgPr : 330 !.....||| !!|||.!!! ! ! ! !!|||..!:!! !|||.!!|||||||| ArgGlnIleArgIleAlaAspPheIlePheGlnCysIleMetAsnIleAspArgPr 1222747 : AGACAAATACGCATCGCCGATTTTATTTTCCAGTGCATTATGAACATCGACCGACC : 1222693 331 : oAlaGluAlaPheArgIleValMetPheLeuCysGlyGlnGlnPheHisLeuTyrA : 349 |! !||| !.!!|||:!!!.!||||||:!! !..|||:::||||||||| oAspGluLeuIleArgLeuAlaMetPheValValAlaGlnLysPheHisLeuLeuI 1222692 : TGACGAACTCATCAGGCTTGCGATGTTTGTCGTAGctcagaaatttcatttgctcA : 1222636 350 : laLeuSerLeuProGlyGlnGluLeuMetAspArgSerAlaGlyLeuIleAspAla : 367 !|||||||||||||||||| !|||:!:|||!.!||| !|||||| !||| ! leLeuSerLeuProGlyGlnMetLeuLeuAspHisSerLeuGlyLeuAlaAspIle 1222635 : TCCTTAGTTTACCTGGGCAAATGTTGTTAGATCATAGTTTAGGATTGGCCGATATA : 1222582 368 : {Il} >>>> Target Intron 1 >>>> {e}TyrSerSerLysTrpTyrGl : 375 {||} 71 bp {|}|||:!!||||||||||||:! {Il}++ ++{e}TyrAlaSerLysTrpTyrGl 1222581 : {AT}gt.........................ag{T}TACGCTTCTAAATGGTACGA : 1222487 376 : nThrProIleLysPheGlnArgValLeuGluIleMetGlnIleArgCysSerArgP : 394 ! !|||:!!||| |||!:!:!!:!! ! ! ||||||!!:|||! !! !|||| uLeuProValLysGlyGlnLysLeuIleTyrThrMetGlnMetArgSerIleArgP 1222486 : ACTACCGGTAAAAGGGCAAAAGTTGATTTACACGATGCAAATGAGGTCCATACGGC : 1222430 395 : roCysLysLeuThrAlaGlyGlyLeuTyrGluMetAsnIleGluAsnPheGlySer : 412 |||||! !|||||||||||||||:!!:!!|||||||||||||||!:!||||||! ! roCysIleLeuThrAlaGlyGlyValHisGluMetAsnIleGluSerPheGlyIle 1222429 : CATGTATATTAACAGCAGGAGGAGTGCATGAGATGAACATCGAGAGTTTCGGAATA : 1222376 413 : MetIleLysThrCysValSer : 419 :!: !!!.!.! :!!!:! ValCysAsnAsnMetIleAsn 1222375 : GTATGTAATAATATGATAAAT : 1222353 vulgar: gi|805795905|ref|XP_012143137.1| 311 419 . KQ414851.1 1222747 1222352 - 271 M 56 168 S 0 2 5 0 2 I 0 67 3 0 2 S 1 1 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222353 1222747 271 - . gene_id 2 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1222578 1222747 . - . KQ414851.1 exonerate:protein2genome:local exon 1222578 1222747 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1222576 1222577 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222507 1222577 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1222507 1222508 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222353 1222506 . - . KQ414851.1 exonerate:protein2genome:local exon 1222353 1222506 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222353 1222747 271 - . alignment_id 2 ; Query gi|805795905|ref|XP_012143137.1| ; Align 1222748 312 168 ; Align 1222506 369 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 247 Query range: 167 -> 397 Target range: 1240082 -> 1238370 168 : LeuTrpIlePheValSerLeuPheLeuCysIleProLeuSerSerPheAlaLeuAs : 186 |||!:: ::: :::|||||| :!!|||::: ||||| LeuPheSerValLeuPheIlePheLeuValValProIlePheProProLeuLeuAs 1240082 : TTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcctcctcttctggA : 1240028 187 : pIleIleValProLeuAsnGluSerArgProArgValSerLeuPheLysLeuAsnT : 205 ||||:!! !||||||||||||!!!||| !!||| ...:::||||||:::|||| pIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIlePheLysValAsnT 1240027 : CATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatattcaaagttaaTT : 1239971 206 : yr<->IleMetAspMetGluAspHisPheTyrIleValTyrLeuHisSerAlaCys : 222 || |||!!:|||! !!!:!!:!!. ! |||..!|||!!!|||! !:!!!! yrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPheHisLeuSerTrp 1239970 : ACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTTCACTTGTCTTGG : 1239917 223 : CysAlaLeuAsnValValLeuIleValThrThrMetAspSerLeuTyrMetValIl : 241 .!!:!!!.!:!!! !:!! !||| !!:! !!:! !:!!|||:!::!!:! ThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIleTyrValLeuLe 1239916 : ACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGTCCTTCT : 1239860 242 : eIleHisTyrSerCysGlyLeuPheAlaLeuCysGlyTyrGlnIleGlnLysValA : 260 !||||||:!!!!! !!||||||||||||:!!..!||| ...::: ..!. uIleHisHisThrSerGlyLeuPheAlaValAlaGly***IlePheLysHisThrC 1239859 : TATTCATCATACCAGCGGTCTGTTTGCTGTGGCTGggtaaatattcaaacataCCT : 1239803 261 : laGluAspMetAspLeuAsnSerAspAsnThr{Ar} >>>> Target Intron : 271 .!... ::: ||| ...{||} 790 bp ysAsnIleAsnGluGluAsnIleIleIleAsn{Ar}-+ 1239802 : GTAacataaacgaagaaaatataattattaat{ag}at.................. : 1239766 272 : 1 >>>> {g}IleSerSerValLysTyrGluArgLeuLysArgCysValLysTh : 286 {|}:!!! !! !!.! !:! ! !! !! ! ! ! !:!!!. ++{g}LeuPhePheAlaPhePheTyrLeuSerMetSerLeuGluGlnAs 1239765 : .......ag{A}CTTTTCTTCGCGTTCTTCTATTTATCAATGTCACTAGAACAAAA : 1238935 287 : rHisTyrGluAlaIleLysPheTyrGluTyrMetGluGluSerThrArgIleGlyT : 305 ! !|||... !! !..!||||||!!: ! ..!! |||!.!||| nPheTyrSerAsnArgSerPheTyrAspArgAsnSerAlaSerAsnArgSerLysL 1238934 : CTTCTACTCCAATAGATCGTTTTATGATAGAAACTCAGCTTCGAATCGgtccaaaa : 1238878 306 : yrLeuPheGlnValGlyPheAsnMetIleGlyIle--ThrAlaThrAlaValGlnA : 323 ||| :::...||| :::||| :::##|||:!! !!.! !!|||. ysAsnPheIleIleSerPheIleIleIleThrMet##ThrSerPheValPheGlnT 1238877 : aaaatttcataatttcatttataataataacaatgatACTTCATTTGTTTTCCAGA : 1238822 324 : laValAlaAsnPheAspArgProAlaGluAlaPheArgIleValMetPheLeuCys : 341 !!|||!.!|||.!.||| !|||.!!! !|||!!.|||! !!.!! ! !!! ! ! hrValGlyAsnIleAspAspProThrValAlaLeuArgAsnAlaThrValTrpGly 1238821 : CAGTGGGGAATATAGACGATCCGACAGTAGCTTTGAGAAACGCTACGGTCTGGGGG : 1238768 342 : GlyGlnGlnPheHisLeuTyrAlaLeuSerLeuProGlyGlnGluLeuMetAspAr : 360 !.!:!!|||.!!||||||!:! !:!!|||:!!|||||||||! !|||!!:|||!. AlaLysGlnIleHisLeuPheIleIleSerIleProGlyGlnValLeuIleAspHi 1238767 : GCTAAGCAAATTCACCTGTTCATCATCAGTATACCTGGACAGGTGCTTATAGATCA : 1238711 361 : gSerAlaGlyLeuIleAspAla{Il} >>>> Target Intron 2 >>>> { : 368 !!!!!.!! !||| !:!!! !{||} 227 bp { sCysValGluLeuSerAsnAsp{Il}+- ++{ 1238710 : TTGTGTGGAGCTGTCAAACGAC{AT}ga.........................ag{ : 1238458 369 : e}TyrSerSerLysTrpTyrGlnThrProIleLysPheGlnArgValLeuGluIle : 386 |}||||||||||||||||||.!.!.! !!!::!! !:!!!:!:!!|||:!!:!! e}TyrSerSerLysTrpTyrAsnAsnGlyMetGluAlaLysLysIleLeuGlnVal 1238457 : A}TACTCCTCCAAATGGTACAATAACGGAATGGAAGCTAAGAAAATACTTCAAGTA : 1238406 387 : MetGlnIleArgCysSerArgProCysLysLeu : 397 |||||| |||..!|||!:!||||||! !||| MetGlnGlnArgAlaSerLysProCysIleLeu 1238405 : ATGCAACAGAGAGCTAGCAAACCGTGTATATTA : 1238371 vulgar: gi|805795905|ref|XP_012143137.1| 167 397 . KQ414851.1 1240082 1238370 - 247 M 38 114 G 0 3 M 65 195 S 0 2 5 0 2 I 0 786 3 0 2 S 1 1 M 45 135 F 0 2 M 51 153 S 0 2 5 0 2 I 0 223 3 0 2 S 1 1 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1238371 1240082 247 - . gene_id 3 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1239769 1240082 . - . KQ414851.1 exonerate:protein2genome:local exon 1239769 1240082 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1239767 1239768 . - . intron_id 1 ; splice_site "aT" KQ414851.1 exonerate:protein2genome:local intron 1238979 1239768 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1238979 1238980 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1238686 1238978 . - . KQ414851.1 exonerate:protein2genome:local exon 1238686 1238978 . - . insertions 0 ; deletions 0 ; frameshifts 2 KQ414851.1 exonerate:protein2genome:local splice5 1238684 1238685 . - . intron_id 2 ; splice_site "GA" KQ414851.1 exonerate:protein2genome:local intron 1238459 1238685 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1238459 1238460 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1238371 1238458 . - . KQ414851.1 exonerate:protein2genome:local exon 1238371 1238458 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1238371 1240082 247 - . alignment_id 3 ; Query gi|805795905|ref|XP_012143137.1| ; Align 1240083 168 114 ; Align 1239966 206 195 ; Align 1238978 272 135 ; Align 1238841 317 153 ; Align 1238458 369 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 232 Query range: 165 -> 253 Target range: 1243863 -> 1243599 166 : SerSerLeuTrpIlePheValSerLeuPheLeuCysIleProLeuSerSerPheAl : 184 .!!!!!|||!:: !||| !! !:!!|||:!!! .!!||||||! ! !! GlyThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIl 1243863 : GGTACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAAT : 1243809 185 : aLeuAspIleIleValProLeuAsnGluSerArgProArgValSerLeuPheLysL : 203 !||||||:!!:!! !||||||||||||!!!||| !!|||:!!...:::...|||| eLeuAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysL 1243808 : ATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaat : 1243752 204 : euAsnTyrIleMetAspMetGluAspHisPheTyrIleValTyrLeuHisSerAla : 221 ||...|||:!:.!.||||||||| :::|||||| :::|||:!!:!!!!!!.! euGlnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGly 1243751 : tgcaataccTGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGC : 1243698 222 : CysCysAlaLeuAsnValValLeuIleValThrThrMetAspSerLeuTyrMetVa : 240 !! |||:!!!!!! ..!:!!:!!:!!:!!! !|||!!:|||:!!||||||:!!|| TrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValVa 1243697 : TGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGT : 1243641 241 : lIleIleHisTyrSerCysGlyLeuPheAlaLeuCysGly : 253 ||||||||||:!!!!!|||||||||||||||:!!|||||| lIleIleHisHisThrCysGlyLeuPheAlaValCysGly 1243640 : AATCATTCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: gi|805795905|ref|XP_012143137.1| 165 253 . KQ414851.1 1243863 1243599 - 232 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243863 232 - . gene_id 4 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243863 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243863 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243863 232 - . alignment_id 4 ; Query gi|805795905|ref|XP_012143137.1| ; Align 1243864 166 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 223 Query range: 368 -> 428 Target range: 1242796 -> 1242524 369 : TyrSerSerLysTrpTyrGlnThrProIleLysPheGlnArgValLeuGluIleMe : 387 |||!:!|||! !|||||||||||||||:!: !.!!|||!:!:!!|||.!.|||:! TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIleVa 1242796 : TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATATAGT : 1242742 388 : tGlnIleArgCysSerArgProCysLysLeuThrAlaGlyGlyLeuTyrGluMetA : 406 :|||||||||! !.!!!:!||||||||||||..!|||||||||||||||||||||| lGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluMetA 1242741 : ACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAATGA : 1242685 407 : snIleGluAsnPheGlySer >>>> Target Intron 1 >>>> MetIleL : 415 |||||||||||||||||||| 92 bp .!!| snIleGluAsnPheGlySer++ ++ThrPheL 1242684 : ACATTGAGAATTTTGGATCAgt.........................agacTTTCA : 1242566 416 : ysThrCysValSerTyrPheThrValLeuLeuSerLeuArg : 428 ||||||||:!!||||||||||||:!!|||||||||!!!!:! ysThrCysIleSerTyrPheThrMetLeuLeuSerPheLys 1242565 : AAACCTGCATATCGTACTTTACGATGCTCTTATCATTCAAA : 1242525 vulgar: gi|805795905|ref|XP_012143137.1| 368 428 . KQ414851.1 1242796 1242524 - 223 M 44 132 5 0 2 I 0 88 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242525 1242796 223 - . gene_id 5 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1242665 1242796 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242796 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242525 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242525 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242525 1242796 223 - . alignment_id 5 ; Query gi|805795905|ref|XP_012143137.1| ; Align 1242797 369 132 ; Align 1242573 413 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 212 Query range: 165 -> 253 Target range: 1229491 -> 1229224 166 : SerSerLeuTrpIlePheValSerLeuPheLeuCysIleProLeuSerSerPheAl : 184 ..!:!!||| .!! :!!!!!:!!|||||| :!!||||||! !.!! || AspAlaLeuLeuPheAlaMetCysValPheLeuLeuValProLeuPheGlyProAl 1229491 : GATGCTTTACTCTTCGCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGC : 1229437 185 : aLeuAspIleIleValProLeuAsnGluSerArgProArgValSerLeuPheLysL : 203 ||||||||||:!!:!!|||! !||||||!!!||||||||| !..!||||||!:!: aLeuAspIleValLeuProSerAsnGluThrArgProArgGlnGlnLeuPheArgV 1229436 : CCTGGACATCGTCCTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAG : 1229380 204 : euAsnTyrIleMet<->AspMetGluAspHisPheTyrIleValTyrLeuHisSer : 220 !!|||||||||!!: |||...! !|||:!!|||!:! !||||||:!!!!.! ! alAsnTyrIleIlePheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeu 1229379 : TTAACTATATAATTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTG : 1229326 221 : AlaCysCysAlaLeuAsnValValLeuIleValThrThrMetAspSerLeuTyrMe : 239 !!! |||.!!:!! !:!!|||:!! !:!!! !|||:!:|||||||||||||| PheTrpCysThrIleValLeuValMetAlaIleIleThrValAspSerLeuTyrMe 1229325 : TTTTGGTGTACAATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACAT : 1229269 240 : tValIleIleHisTyrSerCysGlyLeuPheAlaLeuCysGly : 253 |:!!||||||:!!:!!:!! !!|||:!!||||||:!!|||||| tIleIleIleTyrHisAlaSerGlyMetPheAlaIleCysGly 1229268 : GATCATAATTTACCATGCCAGCGGAATGTTCGCTATATGCGGG : 1229225 vulgar: gi|805795905|ref|XP_012143137.1| 165 253 . KQ414851.1 1229491 1229224 - 212 M 42 126 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229491 212 - . gene_id 6 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229225 1229491 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229491 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229491 212 - . alignment_id 6 ; Query gi|805795905|ref|XP_012143137.1| ; Align 1229492 166 126 ; Align 1229363 208 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 210 Query range: 161 -> 253 Target range: 1234338 -> 1234059 162 : ThrLeuTyrArgSerSerLeuTrpIlePheValSerLeuPheLeuCysIleProLe : 180 ..!!!!!:! !..!!!!||| ! !|||:!! !:!!|||||| :!!||||| ValPhePheSerAspThrLeuLeuSerPheMetValValPheLeuLeuValProLe 1234338 : GTGTTCTTCTCAGATACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATT : 1234284 181 : uSerSerPheAlaLeuAspIleIleValProLeuAsnGluSerArgProArgValS : 199 | !! ! !||||||:!!:!!:!!||||||||||||!!!||||||||| !. uValPheProPheLeuAspValValLeuProLeuAsnGluThrArgProArgGlnG 1234283 : AGTTTTTCCATTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGC : 1234227 200 : erLeuPheLysLeuAsnTyrIle<->MetAspMetGluAspHisPheTyrIleVal : 216 .! !|||!:!:!!||||||:!! .!.||| ! !|||:!!|||!:!! !||| lnGlyPheArgValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSerVal 1234226 : AAGGATTCAGAGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTG : 1234173 217 : TyrLeuHisSerAlaCysCysAlaLeuAsnValValLeuIleValThrThrMetAs : 235 |||!!!!!.! !|||!! !!|||:!! !||||||:!!|||:!!! !|||:!:|| TyrPheGlnLeuAlaTrpGlyAlaValValValValMetIleIleIleThrValAs 1234172 : TACTTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGA : 1234116 236 : pSerLeuTyrMetValIleIleHisTyrSerCysGlyLeuPheAlaLeuCysGly : 253 |||||||||||||:!!|||||||||:!!:!! !!|||:!!||||||:!!|||||| pSerLeuTyrMetIleIleIleHisHisAlaSerGlyMetPheAlaValCysGly 1234115 : CTCGTTGTACATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTGTGCGGG : 1234060 vulgar: gi|805795905|ref|XP_012143137.1| 161 253 . KQ414851.1 1234338 1234059 - 210 M 45 135 G 0 3 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234338 210 - . gene_id 7 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234338 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234338 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234338 210 - . alignment_id 7 ; Query gi|805795905|ref|XP_012143137.1| ; Align 1234339 162 135 ; Align 1234201 207 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 187 Query range: 162 -> 253 Target range: 1224300 -> 1224024 163 : LeuTyrArgSerSerLeuTrpIlePheValSerLeuPheLeuCysIleProLeuSe : 181 :::::: ...|||||||||||| !!:!!! !:!!!:!:!! !!.!!||||||! IlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLeuIl 1224300 : attttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGAT : 1224246 182 : rSerPheAlaLeuAspIleIleValProLeuAsnGluSerArgProArgValSerL : 200 !!:! !.!||||||:!!:!!!.!||||||||||||!!!||||||||| ! !| eAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLeuL 1224245 : AAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTT : 1224189 201 : euPheLysLeuAsnTyrIle<->MetAspMetGluAspHisPheTyrIleValTyr : 217 ||.!! !:!!!:!|||||| !!:||| ! ! !!:|||||||||! !||| !! euLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValAsn 1224188 : TGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAAT : 1224135 218 : LeuHisSerAlaCysCysAlaLeuAsnValValLeuIleValThrThrMetAspSe : 236 !!!||| ! ! ! !!!.!:!!::! !! !:!!!!::!!! !.!!:!!|||! PheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAspMe 1224134 : TTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATAT : 1224078 237 : rLeuTyrMetValIleIleHisTyrSerCysGlyLeuPheAlaLeuCysGly : 253 !||||||!!:..!|||||| !:!! !|||||||||||||||:!!|||||| tLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaValCysGly 1224077 : GTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: gi|805795905|ref|XP_012143137.1| 162 253 . KQ414851.1 1224300 1224024 - 187 M 44 132 G 0 3 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224300 187 - . gene_id 8 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224300 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224300 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224300 187 - . alignment_id 8 ; Query gi|805795905|ref|XP_012143137.1| ; Align 1224301 163 132 ; Align 1224166 207 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 161 Query range: 368 -> 413 Target range: 1228545 -> 1228410 369 : TyrSerSerLysTrpTyrGlnThrProIleLysPheGlnArgValLeuGluIleMe : 387 |||||||||! !||||||:!!..! !! !|||||||||||||||:!! ! !!:|| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 388 : tGlnIleArgCysSerArgProCysLysLeuThrAlaGlyGlyLeuTyrGluMetA : 406 ||||||||||..! !!:!||||||! |||||||||||||||||||||||||||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 407 : snIleGluAsnPheGlySerMet : 413 ||!!:|||||||||!.!!:!:!: snMetGluAsnPheAlaAsnVal 1228433 : ACATGGAGAACTTTGCAAACGTT : 1228411 vulgar: gi|805795905|ref|XP_012143137.1| 368 413 . KQ414851.1 1228545 1228410 - 161 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1228545 161 - . gene_id 9 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228411 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1228545 161 - . alignment_id 9 ; Query gi|805795905|ref|XP_012143137.1| ; Align 1228546 369 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 319 -> 369 Target range: 1228764 -> 1228614 320 : AlaValGlnAlaValAlaAsnPheAspArgProAlaGluAlaPheArgIleValMe : 338 :!! !!||| !:!! ! !.!.|||||||||::!||||||.!!||| ! !:! SerPheGlnIleMetLeuAlaLeuAspArgProSerGluAlaIleArgTyrSerVa 1228764 : TCTTTCCAGATAATGCTCGCCCTGGATAGACCGAGCGAAGCTATTAGATATTCTGT : 1228710 339 : tPheLeuCysGlyGlnGlnPheHisLeuTyrAlaLeuSerLeuProGlyGlnGluL : 357 ! !!||| ! ||| !||||||||||||!:! !:!!||||||||||||||| !| lValLeuGlyGlyAlaGlnPheHisLeuPheIleIleSerLeuProGlyGlnThrL 1228709 : GGTTCTTGGAGGTGCGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACAC : 1228653 358 : euMetAspArgSerAlaGlyLeuIleAspAlaIleTyr : 369 ||:!!|||!.!!!!.!! !|||! :!!! !!!:||| euValAspHisCysThrMetLeuThrAsnAspMetTyr 1228652 : TCGTGGATCATTGTACCATGCTAACGAACGATATGTAC : 1228615 vulgar: gi|805795905|ref|XP_012143137.1| 319 369 . KQ414851.1 1228764 1228614 - 107 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228615 1228764 107 - . gene_id 10 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228615 1228764 . - . KQ414851.1 exonerate:protein2genome:local exon 1228615 1228764 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228615 1228764 107 - . alignment_id 10 ; Query gi|805795905|ref|XP_012143137.1| ; Align 1228765 320 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 128 -> 216 Target range: 1243863 -> 1243599 129 : AlaSerAlaTyrPheAlaMetMetLeuPheLeuGlnMetProTrpTrpProArgVa : 147 !.!!!! !!:!!:! ! !!!::!!|||:!! !.!.|||! |||! !:! GlyThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIl 1243863 : GGTACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAAT : 1243809 148 : lAlaAspIleLeuMetProLeuAsnAlaSerArgProArgGlyTyrIlePheProA : 166 ! !|||:!!:!! |||||||||! !!!!||| !!||| ! :::... eLeuAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysL 1243808 : ATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaat : 1243752 167 : laTyrTyrTyrValAspAspAspLysTyrTyrTyrTrpIleIleAlaTyrSerSer : 184 ||| !!||| :::||| :::||| ::: !.!|||!!!.!! euGlnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGly 1243751 : tgcaataccTGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGC : 1243698 185 : IleAlaThrIleIleThrValCysGlyTyrIleAlaCysAspIleTyrPheIleTy : 203 ..!:!!.!!!!:|||:!! ! ! |||.!! ||| ! !:!:!: TrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValVa 1243697 : TGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGT : 1243641 204 : rAlaValGlnHisAlaCysGlyLeuPheThrValAlaGly : 216 !:!!!!.|||.!!||||||||||||.!!|||..!||| lIleIleHisHisThrCysGlyLeuPheAlaValCysGly 1243640 : AATCATTCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: gi|805793799|ref|XP_012142565.1| 128 216 . KQ414851.1 1243863 1243599 - 135 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243863 135 - . gene_id 1 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243863 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243863 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243863 135 - . alignment_id 1 ; Query gi|805793799|ref|XP_012142565.1| ; Align 1243864 129 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759605|ref|XP_012152307.1| PREDICTED: uncharacterized protein LOC105664056 [Megachile rotundata] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 597 Query range: 0 -> 231 Target range: 5294 -> 4042 1 : MetPheArgAsnIleSerProGluArgAlaIleGluPheThrArgTyrSerValAlaLeuTh : 21 |||!!.!:! !! ||||||||||||||||||....!!..!!.! !! !..!|||!!!|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValHisValIleThrAlaPheTh 5294 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCACGTTATCACGGCTTTTAC : 5234 22 : rCysCysTrpPro<-><-><->AlaGlnAlaArgSerArgValThrArgPheLysIleCysA : 39 ||||||||||||| .!! !.!!!:!|||! !||| !!:!||||||||| | rCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuA 5233 : CTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGA : 5171 40 : rgCysLeuValLeuLeuAsnAlaPheLeuLeuPheLeuProLeuValTyrSerLeuTyrThr : 59 ||! !!!!:!!||||||||||||!!.:!!|||||||||||||||:!!|||:!!|||:!!..! rgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHisVal 5170 : GATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTG : 5111 60 : AsnHisAsnAspTyrValAsnPheSerLysSerIleCysLeuPheIleAlaValValGlnIl : 80 :!!!..|||||| !! !||| !!:!!|||:!! !|||||| :!!|||:::|||||||| HisArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGlnIl 5110 : CATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCctcgtgcaaat : 5048 81 : eLeuTrpAsnSerSerIleCysIleValHisGlnAsnAsnPheLeu >>>> Target In : 96 |...:::...::!! !:!!||||||! !!!. ! :!!:!!|||! ! 550 ePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGln++ 5047 : atttttccagacTTTCGTTTGCATCGGCCAATACGATCATTTTCAGgt.............. : 4998 97 : tron 1 >>>> GluLeuIleAlaGluMetLysGluCysCysLysLysAlaLysProTyrG : 112 bp :!!||||||! !||||||||| ||||||:!!! !||||||||||||| ++LysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrG 4997 : ...........agAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACG : 4402 113 : luArgSerThrTyrGlnArgTyrValAspLysTyrSerMetPheTyrGlyValSerThrIle : 132 |||||..!..!!:!||||||||||||:!!|||:!:|||:::|||||| ... !!:!! ! luArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSer 4401 : AAAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCA : 4342 133 : TrpPheTyrValThrAlaLeuIleIleSerThrGlyThrLeuPheIleProGlnProPhePr : 153 |||||||||:!!||||||:!!|||!!: ! !|||!:!|||.!!||| !!.!.|||||||| TrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPhePr 4341 : TGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCC : 4279 154 : oThrAsnAlaGluTyrProPheProValHisTyrGlnProLeuLysSerIleIlePheLeuH : 174 ||||||||||! !|||||||||||||||:!!!:!:!!||||||!:!||||||||||||:!!| oThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetH 4278 : AACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGC : 4216 175 : isGlnSerPheLeuLeuLeuGlnCysSerAlaHisValCysIleAsnThrLeuCysAlaLeu : 194 |||||||||||:!! !:!!||||||:!!||||||!.! !!!!:|||..!|||! !|||||| isGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeu 4215 : ACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTG : 4156 195 : LeuMetLeuPheAlaAlaAlaArgPheGluIleLeuLysIleLysLeuArgLysValArgTh : 215 |||:!!||||||.!!.!!|||||||||||||||||| !! :!!||||||!!.|||!.! LeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAs 4155 : TTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGA : 4093 216 : rSerArgAspLeuIleAspCysValArgMetTyrTyrIleValArgArg : 231 !! !..! |||||| ! !!:!!!:!! !|||! ! !||||||||| pIleGluThrLeuIleLysSerMetLysLysTyrSerThrValArgArg 4092 : TATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: gi|805759605|ref|XP_012152307.1| 0 231 . LHQN01020543.1 5294 4042 - 597 M 25 75 G 0 9 M 70 210 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 5294 597 - . gene_id 1 ; sequence gi|805759605|ref|XP_012152307.1| ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 5001 5294 . - . LHQN01020543.1 exonerate:protein2genome:local exon 5001 5294 . - . insertions 9 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 4999 5000 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 4451 5000 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 4451 4452 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 4043 4450 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4450 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 5294 597 - . alignment_id 1 ; Query gi|805759605|ref|XP_012152307.1| ; Align 5295 1 75 ; Align 5211 26 210 ; Align 4451 96 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759605|ref|XP_012152307.1| PREDICTED: uncharacterized protein LOC105664056 [Megachile rotundata] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 289 Query range: 264 -> 363 Target range: 1895 -> 1440 265 : LysGlnProPheThrValGlnValGlnPheLeuSerLeuAlaGlyThrGlyLeuIleGluVa : 285 ||||||||||||.!!|||:!!!.!|||||||||!!!:!!::!||||||!.!|||:!:||||| LysGlnProPheAlaValLysAlaGlnPheLeuThrValSerGlyThrAlaLeuLeuGluVa 1895 : AAACAACCGTTCGCTGTGAAAGCTCAGTTTCTTACTGTGAGTGGAACCGCTTTGCTGGAAGT : 1835 286 : lPheMetPheAlaTrpProAlaAspHisLeuLeuHisLeu >>>> Target Intron 1 : 299 |.!!|||! !:!! |||||||||||||||:!! !!:!! 82 bp lLeuMetCysSerLeuProAlaAspHisLeuIleAspMet++ 1834 : GCTTATGTGTTCACTACCAGCTGACCATTTGATAGATATGgt.................... : 1791 300 : >>>> SerGlnAsnThrMetGlnValIleTyrGluSerLeuTrpTyrLeuArgSerAlaS : 317 |||:!!|||! !||||||! !|||||||||||| !|||||| !|||||| . ++SerGluAsnIleMetGlnGlyIleTyrGluSerLysTrpTyrGluArgSerLeuL 1790 : .....agAGCGAGAACATAATGCAAGGAATATATGAATCAAAATGGTACGAACGAtctctaa : 1657 318 : erMetGlnArgAspIleAlaIleMetMetLeuProGlnAlaProValAlaIleLysIleVal : 337 ..:::|||:::..!! !!.!:!!|||:!! !||||||:!!||||||.!!:!!|||||| ! ysIleGlnLysSerThrValLeuMetLeuThrProGlnSerProValThrValLysIleLys 1656 : aaattcaaaagtcTACAGTCCTCATGTTGACTCCTCAATCTCCGGTGACAGTAAAAATCAAG : 1597 338 : TyrIleIleProIleMetSerLeuAsnTyrTyrCysSer >>>> Target Intron 2 : 351 ! !:!!||||||::::::|||||||||:::||||||||| 76 bp CysLeuIleProValLeuSerLeuAsnPheTyrCysSer++ 1596 : TGCCTCATTCCAGttctttctttgaatttttactgCTCGgt..................... : 1553 352 : >>>> PheValSerAsnValLeuSerLeuPheThrValLeuArg : 363 !:!||||||||||||!!!||||||||||||!.!|||||| ++TyrValSerAsnValPheSerLeuPheThrAlaLeuArg 1552 : ....agTACGTCTCAAATGTGTTCTCTTTATTTACCGCTTTAAGA : 1441 vulgar: gi|805759605|ref|XP_012152307.1| 264 363 . LHQN01020543.1 1895 1440 - 289 M 34 102 5 0 2 I 0 78 3 0 2 M 52 156 5 0 2 I 0 72 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 1441 1895 289 - . gene_id 2 ; sequence gi|805759605|ref|XP_012152307.1| ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 1794 1895 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1794 1895 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 1792 1793 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 1712 1793 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 1712 1713 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 1556 1711 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1556 1711 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 1554 1555 . - . intron_id 2 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 1480 1555 . - . intron_id 2 LHQN01020543.1 exonerate:protein2genome:local splice3 1480 1481 . - . intron_id 1 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 1441 1479 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1441 1479 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 1441 1895 289 - . alignment_id 2 ; Query gi|805759605|ref|XP_012152307.1| ; Align 1896 265 102 ; Align 1712 299 156 ; Align 1480 351 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759618|ref|XP_012152350.1| PREDICTED: uncharacterized protein LOC105664057 [Megachile rotundata] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 250 Query range: 95 -> 233 Target range: 4456 -> 4042 96 : PheGlnValLeuTyrPheAspMetGluAspPheCysLysArgAlaThrSerSerGluArgIl : 116 !!.||| !||| ! !!:|||:!! !! !|||:!!! !|||! ! !!! !|||||| LeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAs 4456 : TTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGA : 4396 117 : eValLeuGlnArgTyrValAspArgTyrLysTyrPheHisGlyValTyrThrLeuTrpCysP : 137 !|||!!!||||||||||||:!!!:!:!:... |||::: ... !:!!! !|||! !! pValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheT 4395 : CGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTT : 4333 138 : heLeuThrThrMetPheValIleSerGlyProLeuTyrSerProGlnThrPheProThrHis : 157 :!||||||.!!!!:.!!:!!:!! !||| !||| !! ! !!.!. !!|||||||||:!! yrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPheProThrAsn 4332 : ACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACCAAC : 4273 158 : AlaIleTyrProPheProValGluHisGlnProLeuLysCysLeuIlePhePheHisGlnSe : 178 |||:!!|||||||||||||||.!. !:!!||||||!:! !!:!!||||||.!.|||||||| AlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHisGlnSe 4272 : GCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCACCAATC : 4210 179 : rLeuValGlyPheGlnAlaSerSerGlyMetAlaIleAspAlaGlnValAlaLeuLeuLeuA : 199 |!!!||||||.!.|||..!:!!:!! ! ::!!!::!!!.!! !||||||||||||! rPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeuLeuLeuL 4209 : GTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTGTTATTGC : 4147 200 : rgTyrThrAlaAlaArgPheGluLeuLeuAlaMetGlnLeuHisAlaAlaThrSerAspArg : 219 !!:!|||.!!||||||||||||:::||| !! !:!!|||... !!.!!.!..! !..! euPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAspIleGlu 4146 : TATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGATATCGAA : 4087 220 : GluLeuAsnAlaCysIleLysValHisSerGluLeuLeuArg : 233 !|||! ! ! !!!!:||| !:!!||| :!!! !||| ThrLeuIleLysSerMetLysLysTyrSerThrValArgArg 4086 : ACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: gi|805759618|ref|XP_012152350.1| 95 233 . LHQN01020543.1 4456 4042 - 250 M 138 414 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 4456 250 - . gene_id 1 ; sequence gi|805759618|ref|XP_012152350.1| ; gene_orientation . LHQN01020543.1 exonerate:protein2genome:local cds 4043 4456 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4456 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 4456 250 - . alignment_id 1 ; Query gi|805759618|ref|XP_012152350.1| ; Align 4457 96 414 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805759608|ref|XP_012152319.1| PREDICTED: uncharacterized protein LOC100884055 [Megachile rotundata] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 582 Query range: 93 -> 353 Target range: 4462 -> 1552 94 : AspArgPheGlnGlyValValGluGlyMetGlnThrTyrCysLysAsnAlaAsnValArgGl : 114 |||! !!!.||| !:!!:!!|||! !|||:!!! !! !|||:!!!..|||!!. ! !|| AspThrLeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGl 4462 : GACACGTTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGA : 4402 115 : uArgValIleLeuGlnTrpTyrValAspGlnPheSerThrPheTyrGlyValSerAlaThrT : 135 ||||! !:!!!!!||| ! ||||||:!!:!! ||| |||||| ... !!:!!:!!| uArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerT 4401 : AAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCAT : 4339 136 : rpPheTyrLeuThrAlaIleLeuValIleLeuGlyThrPhePheSerSerHisProPhePro : 155 ||||||||||||||||||||:!!:!!:!!||||||!:!.!..!!! !||| !!||||||||| rpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPhePro 4338 : GGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCA : 4279 156 : ThrAsnAlaValTyrProIleAlaValAspTyrGlnProLeuMetSerIleValPheLeuHi : 176 ||||||||||||||||||.!! !!|||:!!!:!:!!||||||! ||||||:!!|||:!!|| ThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHi 4278 : ACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCA : 4216 177 : sGlnSerValIleGlyLeuGlnPheSerAlaThrValCysValSerValLeuCysAlaLeuL : 197 ||||||| !!:!!|||:!!|||! !:!!||| !!.! !!:!!!:!||||||! !||||||| sGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeuL 4215 : CCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTGT : 4153 198 : euLeuLeuPheAlaSerAlaArgPheGluIleLeuLysMetGluLeuArgGluValLysLys : 217 |||||||||||.!!!!!|||||||||||||||||| !! !|||||||||.!.|||!!. ! euLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAsp 4152 : TATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGAT : 4093 218 : ProSerGluLeuIleLysCysMetGluLysTyrTyrThrValArg{Ar} >>>> Target : 233 !..! !||||||||| !!|||:!!||||||! |||||||||{||} 8 IleGluThrLeuIleLysSerMetLysLysTyrSerThrValArg{Ar}++ 4092 : ATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGG{AG}gt........... : 4041 234 : Intron 1 >>>> {g}TyrAlaCysAspValValAsnThrIleLysTyrLeuProMet{ : 248 72 bp {|}|||||||||...:!!..! !.!:!! !! ||| !:::{ ++{g}TyrAlaCysSerLeuThrLeuAsnValLeuLeuLeuAspLeu{ 4040 : ..............ag{A}TACGCTTGCTCATTAACATTAAACGTCTTATTGTTAGATctc{ : 3128 249 : Cy} >>>> Target Intron 2 >>>> {s}ThrValIleMetCysGlyValIleLeu : 257 ||} 1173 bp {|} ::: ::: |||||| Cy}++ +-{s}GluIleLysIleValGlyValGlnLys 3127 : tg}gt.........................aa{c}gaaataaaaattgttggagttcaaaaa : 1928 258 : ValPheCysGlyIleLysIleIleGln<->ProGlnProPheThrSerArgCysGlnTyrLe : 277 :::... !:!!::!! |||:!! !|||||||||.!! !!:!..!|||!:!|| IleMetAsnTyrValArgThrIleGlu***LysGlnProPheAlaValLysAlaGlnPheLe 1927 : ataatgaacTATGTTCGAACGATTGAATAGAAACAACCGTTCGCTGTGAAAGCTCAGTTTCT : 1865 278 : uSerIleValTrpThrAlaLeuValAspValPheValCysAlaTrpProAlaAspHisLeuL : 298 |!!!:!: ! ! |||||||||:!!!!:|||.!!:!!|||:!! |||||||||||||||: uThrValSerGlyThrAlaLeuLeuGluValLeuMetCysSerLeuProAlaAspHisLeuI 1864 : TACTGTGAGTGGAACCGCTTTGCTGGAAGTGCTTATGTGTTCACTACCAGCTGACCATTTGA : 1802 299 : euSerIle >>>> Target Intron 3 >>>> SerGlnAsnValMetGluGlyIleT : 309 !!..!!!: 82 bp |||:!!|||:!!|||:!!||||||| leAspMet++ ++SerGluAsnIleMetGlnGlyIleT 1801 : TAGATATGgt.........................agAGCGAGAACATAATGCAAGGAATAT : 1687 310 : yrGluSerThrTrpPheAspArgGlySerSerMetGlnArgAspValArgIleMetLeuLeu : 329 ||||||||! !|||!:!!!:|||... ...:::|||:::..!..! !:!!|||||| ! yrGluSerLysTrpTyrGluArgSerLeuLysIleGlnLysSerThrValLeuMetLeuThr 1686 : ATGAATCAAAATGGTACGAACGAtctctaaaaattcaaaagtcTACAGTCCTCATGTTGACT : 1627 330 : ProGlnProProValAlaIleLysValAspCysIleIleProAlaLeuSerLeuAsnTyrPh : 350 |||||| !!||||||.!!:!!|||:!! ! |||:!!||||||!..||||||||||||::::: ProGlnSerProValThrValLysIleLysCysLeuIleProValLeuSerLeuAsnPheTy 1626 : CCTCAATCTCCGGTGACAGTAAAAATCAAGTGCCTCATTCCAGttctttctttgaattttta : 1564 351 : eCysSerVal : 353 :||||||||| rCysSerVal 1563 : ctgCTCGGTA : 1553 vulgar: gi|805759608|ref|XP_012152319.1| 93 353 . LHQN01020543.1 4462 1552 - 582 M 139 417 S 0 2 5 0 2 I 0 868 3 0 2 S 1 1 M 14 42 S 0 2 5 0 2 I 0 1169 3 0 2 S 1 1 M 18 54 G 0 3 M 34 102 5 0 2 I 0 78 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 1553 4462 582 - . gene_id 1 ; sequence gi|805759608|ref|XP_012152319.1| ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 4044 4462 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4044 4462 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 4042 4043 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 3172 4043 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 3172 3173 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 3127 3171 . - . LHQN01020543.1 exonerate:protein2genome:local exon 3127 3171 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 3125 3126 . - . intron_id 2 ; splice_site "gt" LHQN01020543.1 exonerate:protein2genome:local intron 1954 3126 . - . intron_id 2 LHQN01020543.1 exonerate:protein2genome:local splice3 1954 1955 . - . intron_id 1 ; splice_site "aa" LHQN01020543.1 exonerate:protein2genome:local cds 1794 1953 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1794 1953 . - . insertions 3 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 1792 1793 . - . intron_id 3 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 1712 1793 . - . intron_id 3 LHQN01020543.1 exonerate:protein2genome:local splice3 1712 1713 . - . intron_id 2 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 1553 1711 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1553 1711 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 1553 4462 582 - . alignment_id 1 ; Query gi|805759608|ref|XP_012152319.1| ; Align 4463 94 417 ; Align 3171 234 42 ; Align 1953 249 54 ; Align 1896 267 102 ; Align 1712 301 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1046 Query range: 3 -> 373 Target range: 217117 -> 219803 4 : AlaProAlaLysSerArgAlaGlyLeuProGluGlnAspTyrLeuLysAsnValAspL : 23 ||| !! !|||..!!:!:!! ! ! !!!!: ! !!:||| ||||||::::::| AlaThrAsnLysGluGlnSerProArgThrAspTyrGluTyrGluLysAsnIleAsnL 217118 : GCAACAAACAAGGAACAATCCCCCAGAACCGACTACGAgtacgagaaaaatataaatc : 217175 24 : euSerValArgLeuAsnArgTrpIleLeuLysProIleAlaAlaTrpProGluSerSe : 42 |||||:!!!:!! !|||||||||:!:|||||||||!!:!.! !||||||.!.||| ! euSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnSerAr 217176 : tcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACTCACG : 217232 43 : rThrValSerProMetLysLysTyrLeuSerTrpPheValHisValValCysTyrPhe : 61 !|||..!!!! ! ::!||| !|||! ! .!.:!!:!!!.!:!!|||||| ! gThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTyrGly 217233 : TACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTACGGT : 217289 62 : LeuMetSerPheLeuPheValProCysLeuIlePheLeuIleLeuGluValAsnGlyT : 81 |||!!:|||||||||||||||||||||! !!!:!:!:!!.!!|||||||||.!.! ! LeuIleSerPheLeuPheValProCysSerMetTyrValPheLeuGluValGluAspL 217290 : TTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAGATC : 217349 82 : hrTyrAsnArgIleLysLeuPheGlyProLeuSerSerProLeuMetSerTyrSerLy : 100 !|||:!!!:!:!:||||||||||||||||||! !! ! !:!!|||:!!!:! !|| euTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValMetAlaPheValLy 217350 : TCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAA : 217406 101 : sTyrTyrLeuLeuLeuLeuHisLysAsnAspIleLeuLysCysValLysGlnIleGlu : 119 |||||||! !|||:!!:!!|||||| ||||||! !:!!||||||!:!::!|||||| sTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCysValArgArgIleGlu 217407 : GTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAA : 217463 120 : TrpAspTrpArgAsnMetLysHisLeuGluGluLysArgIleMetValAlaAsnAlaA : 139 !!||||||||||||:!:!:! ! !:!!!!:!:!..! |||:!!!.!||||||| ArgAspTrpArgAsnValArgCysGluLysAspArgGluAlaMetIleValAsnAlaA 217464 : CGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACGCGA : 217523 140 : snTyrAlaArgArgIleValIleValCysThrPhePheMetCysSerSerTyrMetPh : 158 ||!:!!.!|||!:!:!:|||:!!:!!|||||||||||||||! !|||...::::::|| snPheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheValPh 217524 : ATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcgtttt : 217580 159 : ePheTyrIleAlaValProIleThrValGlyArgIleProAlaGlnAspGlyAsnPhe : 177 |:::|||||||||:!!||||||!:!||||||||||||! !:!!:!!:!!||||||.!! eTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeu 217581 : ttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTT : 217637 178 : ThrPheIleLeuLeuProPheProSerProMetArgIleThrAspTyrArgGlnSerP : 197 |||||||||! !||| !||||||! ! !!! ! !|||! !||| !||| ! !!!| ThrPheIleProLeuValPheProPheThrLysTyrIleIleAspThrArgTyrThrP 217638 : ACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTC : 217697 198 : roValAsnGluIlePheTyrPheLeuGlnCysLeuAlaGlyIleLeuLeuArgValIl : 216 ||..!||||||||| ! !:!|||||||||! :!!|||||| !|||:!!!.!! !|| roThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIl 217698 : CTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAAT : 217754 217 : eThrAlaGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGlyGlnMet : 235 ||||:!!!.!||||||||||||||||||.!!||||||||||||||||||||||||!!: eThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIle 217755 : CACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATC : 217811 236 : GluIleLeuMetAsnTrpLeuGlyTyrLeuValAsnGlyArgAlaAspMetSerLysA : 255 |||:!:||||||||||||||| !:!!|||:!!:!!|||||||||||||||||| ! ! GluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgAlaAspMetSerAspT 217812 : GAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGAGCGGATATGAGCGATA : 217871 256 : snLeuAspGlyArgIleAlaArgIleValGluGlnHisValArgIleLeu{Ar} >> : 272 .!:!!|||||||||||||||!!!||||||...||||||||||||||||||{!:} hrValAspGlyArgIleAlaSerIleValSerGlnHisValArgIleLeu{Ly}++ 217872 : CTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTA{AA}gt.. : 217926 273 : >> Target Intron 1 >>>> {g}PheLeuGluLeuThrGluLysThrLeuArg : 282 1229 bp {!}|||||| !|||||||||!:!||||||!:! ++{s}PheLeuThrLeuThrGluArgThrLeuGln 217927 : .......................ag{a}tttttgaCGCTCACAGAGAGAACCCTCCAG : 219181 283 : TyrIleSerLeuValGluPheLeuGlyCysThrValGluLeuCysLeuLeuGlyTyrC : 302 ! ||||||!!!!.!||||||||||||||||||:!!!!::!!||||||:!!||||||! GlnIleSerPheAlaGluPheLeuGlyCysThrMetAspIleCysLeuValGlyTyrT 219182 : CAAATCTCTTTCGCTGAATTTCTAGGATGCACCATGGACATATGTCTCGTTGGATATT : 219241 303 : ysValLeuMet >>>> Target Intron 2 >>>> CysArgLysIleAlaGlu : 311 !:!!:!!:!! 260 bp ||||||||||||...||| yrIleIleVal++ ++CysArgLysIleGlyGlu 219242 : ACATTATCGTGgt.........................agTGtaggaaaattggagaa : 219528 312 : IleSerTyrMetIleAspTrpHisArgLeuLeuGlyLysArgLysLeuSerMetIleL : 331 :::||||||||||||!!:|||:!!|||||| !||||||!:!||||||!!!! :!!| MetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValL 219529 : atgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTT : 219588 332 : euIleMetGlnMetSerHisSerThrIleLysLeuThrAlaGlyAsnIleAlaValLe : 350 ||! !!!: ||||||:!!|||:!!|||||||||||||||||||||!!:!.!! !|| euThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLe 219589 : TGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATT : 219645 351 : uSerTyrArgLysPheGlyAsp >>>> Target Intron 3 >>>> ValValL : 360 |||| !!!!! ||| !||| 87 bp ||||||| uSerIleSerThrPheThrAsp++ ++ValValL 219646 : GTCTATCAGCACTTTTACCGACgt.........................agGTCGTTA : 219762 361 : ysSerAlaPheAlaPheLeuAsnValLeuArgThrValThr : 373 ||!!!||| !!.!!|||||||||||||||||||||:!!||| ysThrAlaValThrPheLeuAsnValLeuArgThrLeuThr 219763 : AGACTGCAGTCACGTTTCTGAATGTACTACGAACATTGACT : 219803 vulgar: gi|805766358|ref|XP_012135239.1| 3 373 . KQ414889.1 217117 219803 + 1046 M 268 804 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 256 3 0 2 M 52 156 5 0 2 I 0 83 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217118 219803 1046 + . gene_id 1 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217118 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217118 217923 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219512 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219668 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219668 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219669 219670 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219669 219755 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219754 219755 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219756 219803 . + . KQ414889.1 exonerate:protein2genome:local exon 219756 219803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217118 219803 1046 + . alignment_id 1 ; Query gi|805766358|ref|XP_012135239.1| ; Align 217118 4 804 ; Align 219154 273 99 ; Align 219513 306 156 ; Align 219756 358 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 932 Query range: 16 -> 371 Target range: 212854 -> 215130 17 : TyrLeuLysAsnValAspLeuSerValArgLeuAsnArgTrpIleLeuLysProIleA : 36 ||| !|||...|||:::||||||::: !! !|||||||||:!!|||||||||! ! TyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrG 212855 : TACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGG : 212912 37 : laAlaTrpProGluSerSerThrValSerProMetLysLysTyrLeuSerTrpPheVa : 55 .! !||||||!!:!.!||| !|||||||||!!::!!||| !!:!!:!! ! !!.|| lyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIleAlaArgLeuVa 212913 : GTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGT : 212969 56 : lHisValValCysTyrPheLeuMetSerPheLeuPheValProCysLeuIlePheLeu : 74 |:!!..!||||||||| !|||!!:.!!!:!||| ! :!!|||||| !:!:!:!:!! lAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrVal 212970 : CAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTG : 213026 75 : IleLeuGluValAsnGlyThrTyrAsnArgIleLysLeuPheGlyProLeuSerSerP : 94 .!!|||!!:|||...... :::......|||:!!||||||||| !!!!:!!! ! PheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheC 213027 : TTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTT : 213086 95 : roLeuMetSerTyrSerLysTyrTyrLeuLeuLeuLeuHisLysAsnAspIleLeuLy : 113 !:!! :!! !!!||||||:!!! !|||:!!|||||| :!!||||||! !! ysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgTh 213087 : GCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTAC : 213143 114 : sCysValLysGlnIleGluTrpAspTrpArgAsnMetLysHisLeuGluGluLysArg : 132 !||||||:!!!!.!!::!!!::||||||!:!|||!!:! !||| !|||!!:|||..! rCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGlu 213144 : GTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAA : 213200 133 : IleMetValAlaAsnAlaAsnTyrAlaArgArgIleValIleValCysThrPhePheM : 152 ||||||!.! !||||||!:!!:!!.!!:!|||||||||! !:!!|||.!!||||||| IleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPhePheM 213201 : ATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCA : 213260 153 : etCysSerSerTyrMetPhePheTyrIleAlaValProIleThrValGlyArgIlePr : 171 ||! !!!!.!!!:!! !|||!:!!:!:!!!.!|||||||||!:!!.!! !!:!!!: etTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLysMetVa 213261 : TGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGT : 213317 172 : oAlaGlnAspGlyAsnPheThrPheIleLeuLeuProPheProSerProMetArgIle : 190 !|||:!!||| !||| ! ||||||! !! !:!! ! !!||| ! !!! !||| lAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSerArgPheIle 213318 : AGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATC : 213374 191 : ThrAspTyrArgGlnSerProValAsnGluIlePheTyrPheLeuGlnCysLeuAlaG : 210 ..!||| !||| ! |||||||||||||||||||||!:!!!.:!!||| !:!!|||| ValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleIleAlaG 213375 : GTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTG : 213434 211 : lyIleLeuLeuArgValIleThrAlaGlyAlaCysSerLeuAlaAlaThrPheAlaVa : 229 ||:!!|||:!!!.!!.!|||.!!!.!! !||||||||||||||||||..!|||||||| lyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPheAlaVa 213435 : GAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGT : 213491 230 : lHisAlaCysGlyGlnMetGluIleLeuMetAsnTrpLeuGlyTyrLeuValAsnGly : 248 |||||||||||||||||||! |||||||||!:!||||||! !:!!|||:!!:!!||| lHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGly 213492 : TCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGT : 213548 249 : ArgAlaAspMetSerLysAsnLeuAspGlyArgIleAlaArgIleValGluGlnHisV : 268 |||! !|||||||||||||||:!!|||! !||||||||| !||||||.!.||||||| ArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleValAsnGlnHisV 213549 : AGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATG : 213608 269 : alArgIleLeu{Ar} >>>> Target Intron 1 >>>> {g}PheLeuGluLe : 276 |||||||||||{!:} 840 bp {!}||||||||||| alArgIleLeu{Ly}++ ++{s}PheLeuGluLe 213609 : TGCGGATACTG{AA}gt.........................ag{A}TTCTTAGAGCT : 214472 277 : uThrGluLysThrLeuArgTyrIleSerLeuValGluPheLeuGlyCysThrValGlu : 295 |..!||||||.!!|||||| ! :!!|||!!!!.!|||!!.|||! !|||||||||.!. uValGluLysAlaLeuArgGlnValSerPheAlaGluLeuLeuValCysThrValAsn 214473 : CGTGGAGAAAGCACTTCGGCAAGTATCTTTCGCTGAATTATTAGTATGCACGGTGAAT : 214529 296 : LeuCysLeuLeuGlyTyrCysValLeuMet >>>> Target Intron 2 >>>> : 306 |||||||||:!!||||||! !:!!:!!! ! 302 bp LeuCysLeuValGlyTyrTyrIleIleThr++ + 214530 : CTCTGTCTCGTTGGATATTACATAATAACGgt.........................a : 214862 307 : CysArgLysIleAlaGluIleSerTyrMetIleAspTrpHisArgLeuLeuGlyLys : 324 |||!:!|||:!!!.!|||:!!||||||||||||!!:|||:!!||||||! !|||!!. +CysLysLysValGlyGluValSerTyrMetIleGluTrpTyrArgLeuProGlyAsn 214863 : gTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACCGATTGCCAGGTAAC : 214918 325 : ArgLysLeuSerMetIleLeuIleMetGlnMetSerHisSerThrIleLysLeuThrA : 344 !:!||||||!!! |||||||||||| !||||||:!!|||:!!:!!|||!!!|||| LysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSerValLysPheThrA 214919 : AAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATCCGTCAAATTCACAG : 214978 345 : laGlyAsnIleAlaValLeuSerTyrArgLysPheGlyAsp >>>> Target Int : 358 ||||||||!!:!.!! !|||||| !!!!! |||.!!..! 69 bp laGlyAsnMetValGluLeuSerIleSerThrPheSerSer++ 214979 : CTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTgt............... : 215022 359 : ron 3 >>>> ValValLysSerAlaPheAlaPheLeuAsnValLeuArgThr : 371 ||||||::!!!!:!! !!||||||||||||!.!||||||||| ++ValValArgThrSerValAlaPheLeuAsnAlaLeuArgThr 215023 : ..........agGTTGTTCGAACATCGGTTGCCTTCTTAAACGCGTTACgaaca : 215130 vulgar: gi|805766358|ref|XP_012135239.1| 16 371 . KQ414889.1 212854 215130 + 932 M 255 765 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 M 33 99 5 0 2 I 0 298 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212855 215130 932 + . gene_id 2 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212855 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 212855 213621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214863 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215019 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215019 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 215020 215021 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 215020 215088 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 215087 215088 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 215089 215130 . + . KQ414889.1 exonerate:protein2genome:local exon 215089 215130 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212855 215130 932 + . alignment_id 2 ; Query gi|805766358|ref|XP_012135239.1| ; Align 212855 17 765 ; Align 214463 273 99 ; Align 214864 306 156 ; Align 215089 358 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 842 Query range: 13 -> 307 Target range: 226903 -> 228181 14 : GluGlnAspTyrLeuLysAsnValAspLeuSerValArgLeuAsnArgTrpIleLeuL : 33 |||.!.||||||! !:!! !!:!!:!!||||||:!!!:!||||||||||||:!:|||| GluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuL 226904 : GAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGA : 226961 34 : ysProIleAlaAlaTrpProGluSerSerThrValSerProMetLysLysTyrLeuSe : 52 |||||:!!!.! !||||||..!||| !!! ! !|||! !!!: !!:!! !!!!|| ysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSe 226962 : AACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTC : 227018 53 : rTrpPheValHisValValCysTyrPheLeuMetSerPheLeuPheValProCysLeu : 71 ||||!!.:!! ! !!:!!|||||| |||||||||||| !!!.||| !! !! ! rTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGly 227019 : CTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGC : 227075 72 : IlePheLeuIleLeuGluValAsnGlyThrTyrAsnArgIleLysLeuPheGlyProL : 91 :!:!:!:!!:!!|||||||||!!.|||.!!||||||! !:!:|||:!!.!!||||||: LeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProM 227076 : TTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGA : 227135 92 : euSerSerProLeuMetSerTyrSerLysTyrTyrLeuLeuLeuLeuHisLysAsnAs : 110 !!|||! ! ! !|||||| ! !||||||! !:!!||| !!!!|||:!!:!!|| etSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAs 227136 : TGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGA : 227192 111 : pIleLeuLysCysValLysGlnIleGluTrpAspTrpArgAsnMetLysHisLeuGlu : 129 |||||||:!!||||||:!!!:!|||:!!|||||||||!:!|||!!:!:!:!!|||||| pIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGlu 227193 : CATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAG : 227249 130 : GluLysArgIleMetValAlaAsnAlaAsnTyrAlaArgArgIleValIleValCysT : 149 !!:!:!!.!:!:||||||.!! !!||| !!|||!.!|||!:!:!::!!! !:!!|||| AspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysT 227250 : GACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCA : 227309 150 : hrPhePheMetCysSerSerTyrMetPhePheTyrIleAlaValProIleThrValGl : 168 ||||||||:!:! !||||||::::::||||||||||||!.!|||||||||!.!!.!|| hrPhePheValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGl 227310 : CGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGG : 227366 169 : yArgIleProAlaGlnAspGlyAsnPheThrPheIleLeuLeuProPheProSerPro : 187 |!!!:!! !!.!!:!!||||||||| !!:!!:!|||! !:!!|||||||||! !||| ySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPhePro 227367 : AAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCA : 227423 188 : MetArgIleThrAspTyrArgGlnSerProValAsnGluIlePheTyrPheLeuGlnC : 207 ! ! !|||.!!||| !||| ! |||||| !!||||||||||||!:!! :!!|||! LysIleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnP 227424 : AAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAAT : 227483 208 : ysLeuAlaGlyIleLeuLeuArgValIleThrAlaGlyAlaCysSerLeuAlaAlaTh : 226 !:!!.!!||||||:!!|||!.!! !:!!|||:!!!.!|||||||||:!!|||||| heValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLe 227484 : TTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCT : 227540 227 : rPheAlaValHisAlaCysGlyGlnMetGluIleLeuMetAsnTrpLeuGlyTyrLeu : 245 !.!!|||||||||||||||||||||||||||:!:|||:!!::!|||||||||:!!||| uLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeu 227541 : GCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTG : 227597 246 : ValAsnGlyArgAlaAspMetSerLysAsnLeuAspGlyArgIleAlaArgIleValG : 265 :!!:!!|||||||||||||||||||||!..||||||! !|||||||||!!!|||||| IleAspGlyArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValT 227598 : ATCGACGGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCA : 227657 266 : luGlnHisValArgIleLeu{Ar} >>>> Target Intron 1 >>>> {g}Ph : 273 !!.|||||||||||||||{!.} 396 bp {!}|| hrHisHisValArgIleLeu{As}++ ++{n}Ph 227658 : CTCACCACGTTCGAATATTG{AA}gt.........................ag{C}TT : 228077 274 : eLeuGluLeuThrGluLysThrLeuArgTyrIleSerLeuValGluPheLeuGlyCys : 292 ||||! |||! !|||||||||:!!!:! ! |||:!!!!!|||||||||||||||||| eLeuAlaLeuIleGluLysThrMetGlnGlnIleAlaPheValGluPheLeuGlyCys 228078 : TCTGGCCCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGT : 228134 293 : ThrValGluLeuCysLeuLeuGlyTyrCysValLeuMetCysArg : 307 |||:!! |||||||||:!!! !|||! !:!!:!!! ! ||| ThrIleIleLeuCysLeuIleGluTyrTyrIleIleThrValArg 228135 : ACAATAATTCTGTGCCTCATCGAGTATTACATCATAACGGTACGc : 228181 vulgar: gi|805766358|ref|XP_012135239.1| 13 307 . KQ414889.1 226903 228181 + 842 M 258 774 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226904 228181 842 + . gene_id 3 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226904 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226904 227679 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228181 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228181 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226904 228181 842 + . alignment_id 3 ; Query gi|805766358|ref|XP_012135239.1| ; Align 226904 14 774 ; Align 228077 273 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 840 Query range: 13 -> 274 Target range: 221351 -> 222134 14 : GluGlnAspTyrLeuLysAsnValAspLeuSerValArgLeuAsnArgTrpIleLeuL : 33 ||| ! |||||| !! !|||||| ! |||||||||!:!|||!:!||||||||||||| GluTyrAspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuL 221352 : GAATACGATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGA : 221409 34 : ysProIleAlaAlaTrpProGluSerSerThrValSerProMetLysLysTyrLeuSe : 52 ||||||||!.!!.!||||||.!.|||:!!!.!:!!||| !!:!::!!!:!||||||! ysProIleGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTy 221410 : AGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTA : 221466 53 : rTrpPheValHisValValCysTyrPheLeuMetSerPheLeuPheValProCysLeu : 71 !|||.!.:!!:!!|||||||||||| !|||!!:!!!||||||!!.||||||||| ! rTrpLeuIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSer 221467 : CTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGC : 221523 72 : IlePheLeuIleLeuGluValAsnGlyThrTyrAsnArgIleLysLeuPheGlyProL : 91 :!!!:!:!!||||||||||||.!.! !..!||||||||||||||||||!!.||||||| LeuTyrValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProL 221524 : CTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGT : 221583 92 : euSerSerProLeuMetSerTyrSerLysTyrTyrLeuLeuLeuLeuHisLysAsnAs : 110 |||||! ! !:!!|||:!!!:! !||||||:!!||||||:!!|||:!!:!!||||| euSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAs 221584 : TGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGA : 221640 111 : pIleLeuLysCysValLysGlnIleGluTrpAspTrpArgAsnMetLysHisLeuGlu : 129 ||||! !:!!|||:!!:!!!::|||||||||||||||!:!|||!!:! :!!! !:!! pIleArgGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLys 221641 : CATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAG : 221697 130 : GluLysArgIleMetValAlaAsnAlaAsnTyrAlaArgArgIleValIleValCysT : 149 !!:||| !||||||:!!! !||||||! !!:!!.!||||||:!::!!!!::!!|||| AspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysT 221698 : GATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCA : 221757 150 : hrPhePheMetCysSerSerTyrMetPhePheTyrIleAlaValProIleThrValGl : 168 |||||||||||! !|||...::::::|||:::|||||||||:!!|||.!!!:!||||| hrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGl 221758 : CATTTTTCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGG : 221814 169 : yArgIleProAlaGlnAspGlyAsnPheThrPheIleLeuLeuProPheProSerPro : 187 |!:!||||||||||||||| ||| |||||||||! !:!! !||||||! ! !! yLysIleProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSer 221815 : TAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCG : 221871 188 : MetArgIleThrAspTyrArgGlnSerProValAsnGluIlePheTyrPheLeuGlnC : 207 ! !|||..!||| !||| ! ||||||||||||||||||.!.!:!! |||||| ArgPheIleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnI 221872 : AGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAA : 221931 208 : ysLeuAlaGlyIleLeuLeuArgValIleThrAlaGlyAlaCysSerLeuAlaAlaTh : 226 !:!!|||||| !|||:!!!.! !||||||:!!!.!||||||||||||!.!|||! leMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMe 221932 : TTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTAT : 221988 227 : rPheAlaValHisAlaCysGlyGlnMetGluIleLeuMetAsnTrpLeuGlyTyrLeu : 245 !|||||||||||||||||||||||||||:!!:!:||||||!:!|||||| !:!!||| tPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeu 221989 : GTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTG : 222045 246 : ValAsnGlyArgAlaAspMetSerLysAsnLeuAspGlyArgIleAlaArgIleValG : 265 :!!||||||||||||||||||!!!!!.|||:!!||| !!|||||||||!:!||||||. IleAsnGlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValA 222046 : ATCAACGGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGA : 222105 266 : luGlnHisValArgIleLeuArgPheLeu : 274 !.||||||||||||||||||!:!!:!:!! snGlnHisValArgIleLeuGlnTyrVal 222106 : ATCAACACGTTCGAATATTGCAGTATGTA : 222134 vulgar: gi|805766358|ref|XP_012135239.1| 13 274 . KQ414889.1 221351 222134 + 840 M 261 783 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221352 222134 840 + . gene_id 4 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221352 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221352 222134 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221352 222134 840 + . alignment_id 4 ; Query gi|805766358|ref|XP_012135239.1| ; Align 221352 14 783 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 605 Query range: 13 -> 272 Target range: 208185 -> 208962 14 : GluGlnAspTyrLeuLysAsnValAspLeuSerValArgLeuAsnArgTrpIleLeuL : 33 .!.::!:!!||| !!!.:!!:!!..!!!!!:!|||||||||||| !|||! |||| AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 34 : ysProIleAlaAlaTrpProGluSerSerThrValSerProMetLysLysTyrLeuSe : 52 || !|||!.!:!!||||||..!|||! ! ! !||| !:!::!!!!. !! ! ysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHi 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCA : 208300 53 : rTrpPheValHisValValCysTyrPheLeuMetSerPheLeuPheValProCysLeu : 71 ! .!!:!!:!!|||:!! !!:!!! !|||:!:.!!|||:!! ! :!!||| ! ! sIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGly 208301 : TATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGC : 208357 72 : IlePheLeuIleLeuGluValAsnGlyThrTyrAsnArgIleLysLeuPheGlyProL : 91 !!:||| !||||||! !|||.!.! ! !|||:!!!:!:!!|||:!!! !.!! !!| MetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaL 208358 : ATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTC : 208417 92 : euSerSerProLeuMetSerTyrSerLysTyrTyrLeuLeuLeuLeuHisLysAsnAs : 110 |||||! ! !:!!|||:!!!:!!!!|||||| :!!:!! !:!!!.!:!!..!|| euSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAs 208418 : TGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGA : 208474 111 : pIleLeuLysCysValLysGlnIleGluTrpAspTrpArgAsnMetLysHisLeuGlu : 129 ||||! !|||||||||:!! ! :!!||| ||||||||||||:!!:!!||| !||| pIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGlu 208475 : CATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAG : 208531 130 : GluLysArgIleMetValAlaAsnAlaAsnTyrAlaArgArgIleValIleValCysT : 149 !!:!:!!:!||||||:!!! !||||||!:!!:!||||||!:!:!::!!:!::!!||| AspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysG 208532 : GACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCG : 208591 150 : hrPhePheMetCysSerSerTyrMetPhePheTyrIleAlaValProIleThrValGl : 168 ! !||||||! !.!!.!. :::|||:::|||||||||:!!|||:!!||| !! lyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAs 208592 : GAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGA : 208648 169 : yArgIleProAlaGlnAspGlyAsnPheThrPheIleLeuLeuProPheProSerPro : 187 !!:!:!! !! !:!!! !||||||!!.|||!:!! ! !||| !!:!||| !||| pLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValPro 208649 : CAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCT : 208705 188 : MetArgIleThrAspTyrArgGlnSerProValAsnGluIlePheTyrPheLeuGlnC : 207 ! ! !||| !||| !||| ! |||||||||||||||||||||||| :!!|||! LysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnL 208706 : AAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAAT : 208765 208 : ysLeuAlaGlyIleLeuLeuArgValIleThrAlaGlyAlaCysSerLeuAlaAlaTh : 226 |||:!!|||.!!:!! !!.! !||||||!.!|||||||||.!!||||||||| euLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLe 208766 : TGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCT : 208822 227 : rPheAlaValHisAlaCysGlyGlnMetGluIleLeuMetAsnTrpLeuGlyTyrLeu : 245 !.!!|||:!!|||||||||||||||:!!:!!|||||||||::!|||:!!! ! ! ||| uLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeu 208823 : GCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTG : 208879 246 : ValAsnGlyArgAlaAspMetSerLysAsnLeuAspGlyArgIleAlaArgIleValG : 265 |||:!!||||||! !||| !..!|||||||||||| !|||:!:|||!.!||||||| ValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleValG 208880 : GTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCGTGG : 208939 266 : luGlnHisValArgIleLeuArg : 272 ||||||||||||||:!::!!!:! luGlnHisValArgValIleLys 208940 : AGCAGCATGTTCGAGTGATCAAG : 208962 vulgar: gi|805766358|ref|XP_012135239.1| 13 272 . KQ414889.1 208185 208962 + 605 M 259 777 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 208962 605 + . gene_id 5 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208186 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208962 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208186 208962 605 + . alignment_id 5 ; Query gi|805766358|ref|XP_012135239.1| ; Align 208186 14 777 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 489 Query range: 21 -> 307 Target range: 256649 -> 257586 22 : AspLeuSerValArgLeuAsnArgTrpIleLeuLysProIleAlaAlaTrpProGluS : 41 |||! !|||:!!!:!||||||||||||.!!||||||||||||!.!||||||||| | AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS 256650 : GATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCT : 256707 42 : erSerThrValSerProMetLysLysTyrLeuSerTrpPheValHisValValCysTy : 60 |||||:!!..!!!! !!:!::!!::! !!:!!||| !!:!!:!!:!!|||||||| erSerSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTy 256708 : CGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTA : 256764 61 : rPheLeuMetSerPheLeuPheValProCysLeuIlePheLeuIleLeuGluValAsn : 79 | !! !!!:! !||| !!!.:!!|||||||||:!! !:!!.!!|||!!:! !:!! rGlySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAsp 256765 : TGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGAC : 256821 80 : GlyThrTyrAsnArgIleLysLeuPheGlyProLeuSerSerProLeuMetSerTyrS : 99 .!! !||| ::::::||| |||||||||:!!||| ! !:!!!!:|||! !: SerPheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysA 256822 : AGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTG : 256881 100 : erLysTyrTyrLeuLeuLeuLeuHisLysAsnAspIleLeuLysCysValLysGlnIl : 118 !!!!.||| ||||||||||||!!. !!!.||||||! ! ! ||||||:!!!!.|| laAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIl 256882 : CCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATAT : 256938 119 : eGluTrpAspTrpArgAsnMetLysHisLeuGluGluLysArgIleMetValAlaAsn : 137 |||| !|||||||||! :!!!:!... !:!!!!::!!!:!:!:|||:!! !||| eGluThrAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsn 256939 : AGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAAC : 256995 138 : AlaAsnTyrAlaArgArgIleValIleValCysThrPhePheMetCysSerSerTyrM : 157 |||!..!:!!.!||| !:!:!.!! ! !!|||.!! !.!!||| |||.!! . AlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValP 256996 : GCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttt : 257055 158 : etPhePheTyrIleAlaValProIleThrValGlyArgIleProAlaGlnAspGlyAs : 176 .. |||:::::::!! ! !!:!:!.!..!! !! !|||! !!.! !:!!! !!. heCysPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluTh 257056 : tctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAAC : 257112 177 : nPheThrPheIleLeuLeuProPheProSerProMetArgIleThrAspTyrArgGln : 195 . ! ! ! !:!!|||||| !! !! ! !! !!:!:!: !:!! ! !||| rThrIleValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGln 257113 : AACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAG : 257169 196 : SerProValAsnGluIlePheTyrPheLeuGlnCysLeuAlaGlyIleLeuLeuArgV : 215 ||||||..!||||||||| ! !|||:!!||| !! !:!!..!|||:!! !! !. SerProThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrT 257170 : AGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTA : 257229 216 : alIleThrAlaGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGlyGl : 234 .!! !|||!.!.!! !! !||||||||||||..!||||||..!||||||! !||||| hrSerThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGl 257230 : CTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCA : 257286 235 : nMetGluIleLeuMetAsnTrpLeuGlyTyrLeuValAsnGlyArgAlaAspMetSer : 253 |:!! :!:||||||:::|||:!! ! ! !!!||||||! ! ! !:!! ... nLeuThrValLeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGlu 257287 : GTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggag : 257343 254 : LysAsnLeuAsp<->GlyArgIleAlaArgIleValGluGlnHisValArgIleLeu{ : 272 |||...... !!:!|||!.! !|||||||||!!.|||:!!|||:!:|||{ LysThrPheProPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{ 257344 : aaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{ : 257403 273 : Ar} >>>> Target Intron 1 >>>> {g}PheLeuGluLeuThrGluLysTh : 280 !!} 76 bp {!}|||:!!..!! !! !|||:!!.. Se}++ ++{r}PheIleSerTyrIleGluGluVa 257404 : AG}gt.........................ag{T}TTCATATCATATATCGAGGAAGT : 257503 281 : rLeuArgTyrIleSerLeuValGluPheLeuGlyCysThrValGluLeuCysLeuLeu : 299 !:!!!.! |||!!!!!!:!!|||!!.!!! !!||||||:!!! :!!|||:!!||| lMetAsnArgIleCysPheLeuGluLeuPheArgCysThrLeuAlaIleCysMetLeu 257504 : GATGAACCGAATATGTTTTTTAGAGTTGTTTAGATGCACGCTGGCTATATGCATGCTG : 257560 300 : GlyTyrCysValLeuMetCysArg : 307 ||||||! !:!!||| ! ||| GlyTyrTyrIleLeuAlaValArg 257561 : GGATACTACATTCTTGCGGTACGT : 257586 vulgar: gi|805766358|ref|XP_012135239.1| 21 307 . KQ414889.1 256649 257586 + 489 M 236 708 G 0 3 M 14 42 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256650 257586 489 + . gene_id 6 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256650 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256650 257404 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257586 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257586 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256650 257586 489 + . alignment_id 6 ; Query gi|805766358|ref|XP_012135239.1| ; Align 256650 22 708 ; Align 257361 258 42 ; Align 257482 273 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 481 Query range: 21 -> 304 Target range: 262846 -> 263770 22 : AspLeuSerValArgLeuAsnArgTrpIleLeuLysProIleAlaAlaTrpProGluS : 41 |||! !|||:!!!:!:!!|||||||||:!:||||||||||||!.!||||||||| !| AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 42 : erSerThrValSerProMetLysLysTyrLeuSerTrpPheValHisValValCysTy : 60 ||:!!:!!:!!||| !|||:!!::! !:!!!!!!::.!!:!! !||||||||||| erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 61 : rPheLeuMetSerPheLeuPheValProCysLeuIlePheLeuIleLeuGluValAsn : 79 |! !|||!!: !! ! ! !!:!!|||! !:!!:!! !:!!:!!||||||!.!.!. rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 80 : GlyThrTyrAsnArgIleLysLeuPheGlyProLeuSerSerProLeuMetSerTyrS : 99 ..! !:!!! !:!:!::!!:!!.!!|||||||||.!!..! !!!!:!:.!! ! AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 100 : erLysTyrTyrLeuLeuLeuLeuHisLysAsnAspIleLeuLysCysValLysGlnIl : 118 !!!.||| !! !||||||||||||!..!!.||||||! ! ||||||:!!!!.:! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 119 : eGluTrpAspTrpArgAsnMetLysHisLeuGluGluLysArgIleMetValAlaAsn : 137 ::!! |||||| !!! !:!!! ...||||||!!::!!|||||||||:!! !||| lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 138 : AlaAsnTyrAlaArgArgIleValIleValCysThrPhePheMetCysSerSerTyrM : 157 |||!!.|||!.!||| !:!:!.! ! !|||.!!.!!|||||| !!!||| !| AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 158 : etPhePheTyrIleAlaValProIleThrValGlyArgIleProAlaGlnAspGlyAs : 176 ||! ! ! !:!!!.!..! !!.!!|||..! ! !||| !! ! :!!! !!. etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 177 : nPheThrPheIleLeuLeuProPheProSerProMetArgIleThrAspTyrArgGln : 195 ! ! !.!. !:!!||||||! !||| ! !! ..!|||! ! ! ! ! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 196 : SerProValAsnGluIlePheTyrPheLeuGlnCysLeuAlaGlyIleLeuLeuArgV : 215 !:!|||..!|||||||||||| ! ! !|||! !|||:!!|||.!!:!!:!!! !! AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 216 : alIleThrAlaGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGlyGl : 234 .!! !|||!.!||||||! !.!!:!!.!!|||..!||||||! !|||||||||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 235 : nMetGluIleLeuMetAsnTrpLeuGlyTyrLeuValAsnGlyArgAlaAspMetSer : 253 |:!!.!.:!:||||||::!|||:!! ! ! !!!|||||| ! ! !||| !!:! nLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsn 263484 : GTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAAT : 263540 254 : LysAsnLeu<->AspGlyArgIleAlaArgIleValGluGlnHisValArgIleLeu{ : 272 ||||||||| ! !..!|||!.! !|||||||||!!.|||:!!|||:!!|||{ LysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeu{ 263541 : AAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTG{ : 263600 273 : Ar} >>>> Target Intron 1 >>>> {g}PheLeuGluLeuThrGluLysTh : 280 !!} 72 bp {!}|||:!!!!:! !! !:!!!!... Se}++ ++{r}PheIleAspArgIleLysAsnVa 263601 : AG}gt.........................ag{T}TTCATAGATCGTATTAAGAATGT : 263696 281 : rLeuArgTyrIleSerLeuValGluPheLeuGlyCysThrValGluLeuCysLeuLeu : 299 !:!!!!! |||!!!!!!||||||!!.!!! !..!|||:!!!!::!!|||:!!||| lMetSerThrIleCysPheValGluLeuPheLysAlaThrLeuAspIleCysMetLeu 263697 : GATGAGTACGATATGTTTCGTGGAGTTATTCAAGGCTACGCTGGATATATGCATGCTA : 263753 300 : GlyTyrCysValLeu : 304 ||||||! !:!!||| GlyTyrTyrIleLeu 263754 : GGTTACTACATACTT : 263770 vulgar: gi|805766358|ref|XP_012135239.1| 21 304 . KQ414889.1 262846 263770 + 481 M 235 705 G 0 3 M 15 45 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 263770 481 + . gene_id 7 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262847 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263601 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 263673 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263672 263673 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 263674 263770 . + . KQ414889.1 exonerate:protein2genome:local exon 263674 263770 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262847 263770 481 + . alignment_id 7 ; Query gi|805766358|ref|XP_012135239.1| ; Align 262847 22 705 ; Align 263555 257 45 ; Align 263675 273 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 439 Query range: 18 -> 276 Target range: 232447 -> 233221 19 : LysAsnValAspLeuSerValArgLeuAsnArgTrpIleLeuLysProIleAlaAlaT : 38 ::!:!! !!!:! !|||:!!!:!:!!|||||||||.!!|||! !|||!!:!.!|||| ArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaT 232448 : CGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCAT : 232505 39 : rpProGluSerSerThrValSerProMetLysLysTyrLeuSerTrpPheValHisVa : 57 |||||... !!!! !..!||| ! :!!:!! |||:!! .!.:!!...:! rpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLe 232506 : GGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACT : 232562 58 : lValCysTyrPheLeuMetSerPheLeuPheValProCysLeuIlePheLeuIleLeu : 76 !..!|||:!!! !||||||! !! !! !.!!|||||||||:!!:!:|||:!!:!:!!! uThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPhe 232563 : CACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTC : 232619 77 : GluValAsnGlyThrTyrAsnArgIleLysLeuPheGlyProLeuSerSerProLeuM : 96 |||! !!...!! ! ! .!.|||!!:|||! !.!!||||||:!!||| ! !|||| GluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuM 232620 : GAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGA : 232679 97 : etSerTyrSerLysTyrTyrLeuLeuLeuLeuHisLysAsnAspIleLeuLysCysVa : 115 ||.!! ! ! !!!.|||! !! !|||||| ! ! !|||||||||||| ! ||||| etGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysVa 232680 : TGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGT : 232736 116 : lLysGlnIleGluTrpAspTrpArgAsnMetLysHisLeuGluGluLysArgIleMet : 134 |:!!|||:!::!! !||||||||||||:!:||| ! ! !! .!.::: !:!:||| lGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMet 232737 : GGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATG : 232793 135 : ValAlaAsnAlaAsnTyrAlaArgArgIleValIleValCysThrPhePheMetCysS : 154 :!! !||||||!!. !!.!||| !|||!.! !:!!..!.!!|||! !||| !! LeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisT 232794 : TTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACA : 232853 155 : erSerTyrMetPhePheTyrIleAlaValProIleThrValGlyArgIleProAlaGl : 173 !!.!! ! ! ! ! ! |||!.!..! !:!! !:!!.!!! !.!! !!.! hrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGl 232854 : CCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGG : 232910 174 : nAspGlyAsnPheThrPheIleLeuLeuProPheProSerProMetArgIleThrAsp : 192 !:!!! !!:!!:!:!!.!. !! !||||||! ! !!! ! !! !!:!:!:! !||| yAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAsp 232911 : GAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGAC : 232967 193 : TyrArgGlnSerProValAsnGluIlePheTyrPheLeuGlnCysLeuAlaGlyIleL : 212 !||| ||||||..!|||||||||.!.!:! !!||||||||||||:!!|||.!!: ThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheI 232968 : ACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCA : 233027 213 : euLeuArgValIleThrAlaGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAl : 231 !!:!!!.! !:!!|||!.!|||||||||.!!|||!.!|||..!.!.|||:!!||||| leValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAl 233028 : TCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGC : 233084 232 : aCysGlyGlnMetGluIleLeuMetAsnTrpLeuGlyTyrLeuValAsnGlyArgAla : 250 ||||||||||:!!.!.:!::!!|||::: |||! ! !!||||||:!!!.!!:!!.! aCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGly 233085 : GTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGG : 233141 251 : AspMetSerLysAsnLeuAspGlyArgIleAlaArgIleValGluGlnHisValArgI : 270 .!. !..!!:! ! !.!. !!!:!:!!!.! !|||||||||!!.|||:!!|||! GlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgT 233142 : CAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTA : 233201 271 : leLeuArgPheLeuGluLeu : 276 !||||||!:!|||...:!! hrLeuArgTyrLeuSerVal 233202 : CATTAAGGTATTTGTCTGTG : 233221 vulgar: gi|805766358|ref|XP_012135239.1| 18 276 . KQ414889.1 232447 233221 + 439 M 258 774 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232448 233221 439 + . gene_id 8 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232448 233221 . + . KQ414889.1 exonerate:protein2genome:local exon 232448 233221 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232448 233221 439 + . alignment_id 8 ; Query gi|805766358|ref|XP_012135239.1| ; Align 232448 19 774 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 432 Query range: 21 -> 272 Target range: 266634 -> 267390 22 : AspLeuSerValArgLeuAsnArgTrpIleLeuLysProIleAlaAlaTrpProGluS : 41 |||! !|||:!!!:!||||||||||||.!!||||||||||||!.!||||||||| !! AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProL 266635 : GATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGT : 266692 42 : erSerThrValSerProMetLysLysTyrLeuSerTrpPheValHisValValCysTy : 60 !||| !..!||| !:!::!!::! !:!!|||!:: !:!! !|||:!!||||| euSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266693 : TGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 61 : rPheLeuMetSerPheLeuPheValProCysLeuIlePheLeuIleLeuGluValAsn : 79 |! !! !!!: !||| ! ! :!!|||||||||.!! !|||:!!||||||! !.!. rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 80 : GlyThrTyrAsnArgIleLysLeuPheGlyProLeuSerSerProLeuMetSerTyrS : 99 .!!! ! !!..!:!:!:|||:!!||||||||||||||| ! !!!!:!:.!! ! SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 100 : erLysTyrTyrLeuLeuLeuLeuHisLysAsnAspIleLeuLysCysValLysGlnIl : 118 !!!.||| ! !|||||||||!.!!..!!.!!:|||! ! ||||||:!!!!.!! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 119 : eGluTrpAspTrpArgAsnMetLysHisLeuGluGluLysArgIleMetValAlaAsn : 137 ::!! |||||||||! !:!!! ...! !|||!!:|||!:!:!:|||:!! !||| tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 138 : AlaAsnTyrAlaArgArgIleValIleValCysThrPhePheMetCysSerSerTyrM : 157 |||!.. !!.!||| !|||!.!||| !!|||.!! |||||| !!!.!! !: AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 158 : etPhePheTyrIleAlaValProIleThrValGlyArgIleProAlaGlnAspGlyAs : 176 !: !!:!! !:!: !..! !!.!!|||:!! !! !:!: !!.! :!!! !!. euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 177 : nPheThrPheIleLeuLeuProPheProSerProMetArgIleThrAspTyrArgGln : 195 ! ! ! ! !|||||||||! ! !! ! !! !!:!!!:! !! ! ! rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 196 : SerProValAsnGluIlePheTyrPheLeuGlnCysLeuAlaGlyIleLeuLeuArgV : 215 ||||||..!||||||||| !! ! !!! !|||! !:!!:!!|||.!!:!!:!!!.! SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 216 : alIleThrAlaGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGlyGl : 234 !! !..!!.!||||||! !||||||||||||..!||||||!.!|||||||||||||| erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 235 : nMetGluIleLeuMetAsnTrpLeuGlyTyrLeuValAsnGlyArgAlaAspMetSer : 253 |:!!...:!:||||||! |||:!! ! ! !!!|||||| !! ! !|||! !:! nLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsn 267272 : GCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAAT : 267328 254 : LysAsnLeu<->AspGlyArgIleAlaArgIleValGluGlnHisValArgIleLeuA : 272 ||||||:!! !! !!:!|||!.! !:!!||||||!!.|||:!!|||:!!|||| LysAsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeuA 267329 : AAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGA : 267388 273 : rg : 272 || rg 267389 : GG : 267390 vulgar: gi|805766358|ref|XP_012135239.1| 21 272 . KQ414889.1 266634 267390 + 432 M 235 705 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266635 267390 432 + . gene_id 9 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266635 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266635 267390 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266635 267390 432 + . alignment_id 9 ; Query gi|805766358|ref|XP_012135239.1| ; Align 266635 22 705 ; Align 267343 257 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 432 Query range: 21 -> 304 Target range: 274380 -> 275306 22 : AspLeuSerValArgLeuAsnArgTrpIleLeuLysProIleAlaAlaTrpProGluS : 41 |||! !|||:!!!:!||||||||||||.!!||||||||||||!.!||||||||| !: AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuA 274381 : GACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAG : 274438 42 : erSerThrValSerProMetLysLysTyrLeuSerTrpPheValHisValValCysTy : 60 !!||| !!..!!!! !.!.:!!::! !|||||| ...::: :::||||| laSerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTy 274439 : CCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctA : 274495 61 : rPheLeuMetSerPheLeuPheValProCysLeuIlePheLeuIleLeuGluValAsn : 79 |! !!!!!!: !! ! ! !!:!!||| !!:!!.!! !:!!||||||! !! !.!. rCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGlu 274496 : CTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAA : 274552 80 : GlyThrTyrAsnArgIleLysLeuPheGlyProLeuSerSerProLeuMetSerTyrS : 99 .!! !:!! !:!:!:||||||.!!|||||||||.!! ! !!!!!!:.!! ! SerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyI 274553 : AGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAA : 274612 100 : erLysTyrTyrLeuLeuLeuLeuHisLysAsnAspIleLeuLysCysValLysGlnIl : 118 !!!.||| ! !|||||||||!.!!..!!.!!:|||! ! ||||||:!!!!.!! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 274613 : TTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACAT : 274669 119 : eGluTrpAspTrpArgAsnMetLysHisLeuGluGluLysArgIleMetValAlaAsn : 137 ::!! |||||||||! !:!!! ...! !|||!!::!!!:!:!:|||:!! !||| tGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsn 274670 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAAC : 274726 138 : AlaAsnTyrAlaArgArgIleValIleValCysThrPhePheMetCysSerSerTyrM : 157 |||!!. !!.!||| !:!!!.!||| !!|||.!! |||||| !!!.!! !: AlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 274727 : GCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTC : 274786 158 : etPhePheTyrIleAlaValProIleThrValGlyArgIleProAlaGlnAspGlyAs : 176 !:! !!:!! !:!: !..! !!.!!|||:!! !! !:!!! !!.! !:!!! !!. euCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluTh 274787 : TCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGAC : 274843 177 : nPheThrPheIleLeuLeuProPheProSerProMetArgIleThrAspTyrArgGln : 195 ! ||| ! !:!!||||||! ! !:!! !! !!:!|||..!! ! ! rArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThr 274844 : CAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACG : 274900 196 : SerProValAsnGluIlePheTyrPheLeuGlnCysLeuAlaGlyIleLeuLeuArgV : 215 ||||||..!||||||||| !! ! !! !|||! !:!!:!!|||.!!:!!:!!!.! SerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnS 274901 : AGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATT : 274960 216 : alIleThrAlaGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGlyGl : 234 !! !.!!!.!||||||! !||||||||||||..!||||||!.!||||||! !||||| erSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGl 274961 : CGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCA : 275017 235 : nMetGluIleLeuMetAsnTrpLeuGlyTyrLeuValAsnGlyArgAlaAspMetSer : 253 |:!!...:!:||||||! |||:!! ! ! !!!|||||| ! ! !|||...::: nLeuSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsn 275018 : GTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaat : 275074 254 : LysAsnLeu<->AspGlyArgIleAlaArgIleValGluGlnHisValArgIleLeu{ : 272 ||||||::: ..!..!|||!.! !:!!||||||!!.|||:!!|||:!!|||{ LysAsnValTyrPheSerGluIleGlyValValValGluHisHisLeuArgValLeu{ 275075 : aaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTC{ : 275134 273 : Ar} >>>> Target Intron 1 >>>> {g}PheLeuGluLeuThrGluLysTh : 280 !!} 74 bp {!}|||:!!! !! !! !||| ! .. Se}++ ++{r}PheIleAlaArgIleGluAspVa 275135 : AG}gt.........................ag{T}TTCATAGCACGTATCGAGGATGT : 275232 281 : rLeuArgTyrIleSerLeuValGluPheLeuGlyCysThrValGluLeuCysLeuLeu : 299 !:!!!.! |||!!!!!!:!!|||!!.!!! !||||||:!!!!::!!|||:!!||| lMetAsnArgIleCysPheMetGluLeuPheLysCysThrLeuAspMetCysMetLeu 275233 : GATGAATCGAATATGCTTCATGGAATTGTTCAAGTGTACTCTGGATATGTGCATGCTT : 275289 300 : GlyTyrCysValLeu : 304 ||||||! !:!!||| GlyTyrTyrIleLeu 275290 : GGCTATTACATTCTC : 275306 vulgar: gi|805766358|ref|XP_012135239.1| 21 304 . KQ414889.1 274380 275306 + 432 M 235 705 G 0 3 M 15 45 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274381 275306 432 + . gene_id 10 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274381 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274381 275135 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274381 275306 432 + . alignment_id 10 ; Query gi|805766358|ref|XP_012135239.1| ; Align 274381 22 705 ; Align 275089 257 45 ; Align 275211 273 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 383 Query range: 3 -> 271 Target range: 259715 -> 260522 4 : AlaProAlaLysSerArgAlaGlyLeuProGluGlnAspTyrLeuLysAsnValAspL : 23 ||| !! !! !!:!!:!:!!! !!!! !||| !..!!:! !!..:!! !|||! AlaThrMetThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspT 259716 : GCCACGATGACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACT : 259773 24 : euSerValArgLeuAsnArgTrpIleLeuLysProIleAlaAlaTrpProGluSerSe : 42 !|||:!!!:!!!!|||||||||.!!||||||||||||!.!||||||||| ||||| yrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSe 259774 : ATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATC : 259830 43 : rThrValSerProMetLysLysTyrLeuSerTrpPheValHisValValCysTyrPhe : 61 |:!!..!!!! !:!::!!||| !:!!||| .!!:!! ! !!:!!|||||| ! rSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSer 259831 : CTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGT : 259887 62 : LeuMetSerPheLeuPheValProCysLeuIlePheLeuIleLeuGluValAsnGlyT : 81 !!!: ! !! !.!.:!!||||||:!!:!! !:!!:!!|||||| !.!..!! ThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerL 259888 : ACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTT : 259947 82 : hrTyrAsnArgIleLysLeuPheGlyProLeuSerSerProLeuMetSerTyrSerLy : 100 !|||! !:!! |||:!!.!!|||||||||!!! ! !!!!:!:.!!! !! !!! euTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAs 259948 : TGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAA : 260004 101 : sTyrTyrLeuLeuLeuLeuHisLysAsnAspIleLeuLysCysValLysGlnIleGlu : 119 .||| !|||||||||... !..|||||||||!..||||||:!!!!.:!:||| nTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGlu 260005 : TTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAG : 260061 120 : TrpAspTrpArgAsnMetLysHisLeuGluGluLysArgIleMetValAlaAsnAlaA : 139 |||||||||! !!!:! !... !:!!!!::!!!.!:!:|||:!! ! !!|||! AsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaL 260062 : AACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGA : 260121 140 : snTyrAlaArgArgIleValIleValCysThrPhePheMetCysSerSerTyrMetPh : 158 !.!:!!.!||| !:!!!.! ! !|||.!! !|||:!! .!!.!! !:!!! ysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCy 260122 : AATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTG : 260178 159 : ePheTyrIleAlaValProIleThrValGlyArgIleProAlaGlnAspGlyAsnPhe : 177 !|||! !:!:!.!..! !:!:!:!..!! ! !|||! !!.! !:!!! !!.. sPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArg 260179 : CTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGG : 260235 178 : ThrPheIleLeuLeuProPheProSerProMetArgIleThrAspTyrArgGlnSerP : 197 ! ! !! !|||||||||! ! !! ! !! ..!:!:! !:!! !.!.!.|||| IleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerP 260236 : ATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTC : 260295 198 : roValAsnGluIlePheTyrPheLeuGlnCysLeuAlaGlyIleLeuLeuArgValIl : 216 ||:!!||||||||| !! ! !!:!!|||! !:!!:!!|||.!!:!!:!!!.! !! roMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSe 260296 : CTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAG : 260352 217 : eThrAlaGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGlyGlnMet : 235 !|||!.!||| !! !||||||||||||..!.!..!!!.!|||||||||||||||:!! rThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeu 260353 : CACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTG : 260409 236 : GluIleLeuMetAsnTrpLeuGlyTyrLeuValAsnGlyArgAlaAspMetSerLysA : 255 .!.:!:||||||.!.|||:!! ! ! !!!|||:!!! ! ! !:!!! !!.!|||! AsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysL 260410 : AACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAA : 260469 256 : snLeuAspGlyArg<->IleAlaArgIleValGluGlnHisValArgIleLeu : 271 !. ! ! !!:! |||!.! !|||||||||!!.|||:!!||| !||| ysAlaProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeu 260470 : AGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC : 260522 vulgar: gi|805766358|ref|XP_012135239.1| 3 271 . KQ414889.1 259715 260522 + 383 M 256 768 G 0 3 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259716 260522 383 + . gene_id 11 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259716 260522 . + . KQ414889.1 exonerate:protein2genome:local exon 259716 260522 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259716 260522 383 + . alignment_id 11 ; Query gi|805766358|ref|XP_012135239.1| ; Align 259716 4 768 ; Align 260487 260 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 372 Query range: 15 -> 272 Target range: 303175 -> 304869 16 : AspTyrLeuLysAsnValAspLeuSerValArgLeuAsnArgTrpIleLeuLysProI : 35 :!!||| !|||:!!:!!! !! ! !..!!:!! !!:!!:!|||||||||||| !!: AsnTyrLysLysAspIleValTyrValThrLysHisSerLysTrpIleLeuLysSerL 303176 : AATTACAAGAAAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCC : 303233 36 : leAlaAlaTrpProGluSerSerThrValSerProMetLysLysTyrLeuSerTrpPh : 54 !!!.! !|||||| :!!..!:!!..! !! ! !!:!||| !! .! euGlyIleTrpPro------AlaValLeuAspGluThrAlaGlyPheLeuProLysIl 303234 : TTGGTATTTGGCCA------GCCGTGTTGGACGAAACCGCAGGATTCCTACCAAAAAT : 303284 55 : eValHisValValCysTyrPheLeuMetSerPheLeuPheValProCysLeuIlePhe : 73 !..! !! !:!! !! !!!!.:!!:!:! !||| ! ! :!!||||||:!!:!! ! eThrIleGlyLeuSerAsnLeuValLeuLeuPheThrValIleProCysIleLeuHis 303285 : CACCATTGGACTCAGTAATTTGGTTCTATTATTCACCGTGATACCGTGTATTCTACAC : 303341 74 : LeuIleLeuGluValAsnGlyThrTyrAsnArgIleLysLeuPheGlyProLeuSerS : 93 :!!|||!!!||| !!!.! !||| ! |||:!:||||||||||||! !||||||! IleIlePheGluGlnLysAspThrIleIleArgLeuLysLeuPheGlyLeuLeuSerP 303342 : ATAATATTCGAACAAAAGGATACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTT : 303401 94 : erProLeuMetSerTyrSerLysTyrTyrLeuLeuLeuLeuHisLysAsnAspIleLe : 112 ! !|||!!:|||! ! !||||||!:: !||| ! !!..||| ||| heCysLeuIleSerLeuMetLysTyrTrpAlaLeuAlaThrArgLysProArgIleLy 303402 : TCTGTTTGATCTCGTTGATGAAGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAA : 303458 113 : uLysCysValLysGlnIleGluTrpAspTrpArgAsn >>>> Target Intron : 125 !:!!|||:!!:!!:!!:!::!! ! ||||||!:!.!. 938 bp sGluCysIleGluGluValGlnSerAspTrpLysGlu++ 303459 : AGAATGTATAGAAGAGGTGCAAAGTGATTGGAAAGAGgt................... : 303499 126 : 1 >>>> MetLysHisLeuGluGluLysArgIleMetValAlaAsnAlaAsnTyrAl : 141 :!!:!! !|||..!!!::::..!!!:|||:!! ! !!!.!.!. !. ++ValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetGl 303500 : ......agGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGGG : 304483 142 : aArgArgIleValIleValCysThrPhePheMetCysSerSerTyrMetPhePheTyr : 160 !|||!.!:!:..!|||:!!|||.!!.!.||||||! !!!!.!! !! .!!!:!:!! yArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHis 304484 : TCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCAC : 304540 161 : IleAlaValProIleThrValGlyArgIleProAlaGlnAspGlyAsnPheThrPheI : 180 ! !.!:!!! !.!!.!!..!|||! ! ! !.!.!.!!: !||| !|||.!!! ThrValMetGlnPheAlaThrGlyThrTyr---ValAspGluTyrAsnArgThrIleL 304541 : ACGGTCATGCAGTTCGCGACCGGAACGTAT---GTGGATGAGTATAATCGTACGATTA : 304597 181 : leLeuLeuProPheProSerProMetArgIleThrAspTyrArgGlnSerProValAs : 199 !! !||| !!:!|||!!! !! !:!! !||| !!:! !||||||:!! ! ysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIleTy 304598 : AACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTA : 304654 200 : nGluIlePheTyrPheLeuGlnCysLeuAlaGlyIleLeuLeuArgValIleThrAla : 218 !|||:!: !!||||||:!!!!.|||:!!..!||| !:!!:!! ! !||||||||| rGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThrAla 304655 : CGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGCT : 304711 219 : GlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGlyGlnMetGluIleL : 238 |||||||||.!!||||||||| !||||||..!|||||||||||||||!!:!!:|||: GlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleV 304712 : GGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCG : 304771 239 : euMetAsnTrpLeuGlyTyrLeuValAsnGlyArgAlaAspMetSerLysAsnLeuAs : 257 !!|||::! ! |||||| !!|||||||||.!!!:!! ! |||...:!!||||| alMetSerArgLeuGlyAspLeuValAsnSerLysGlu------SerSerAspLeuAs 304772 : TTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAA------TCATCTGATTTAGA : 304822 258 : pGlyArgIleAlaArgIleValGluGlnHisValArgIleLeuArg : 272 | !|||:!! !..!|||||||||!!.|||:!!|||||||||||| pLysArgLeuIleGluIleValGluHisHisLeuArgIleLeuArg 304823 : TAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTAAGG : 304869 vulgar: gi|805766358|ref|XP_012135239.1| 15 272 . KQ414889.1 303175 304869 + 372 M 24 72 G 2 0 M 83 249 5 0 2 I 0 934 3 0 2 M 46 138 G 1 0 M 79 237 G 2 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303176 304869 372 + . gene_id 12 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303176 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303176 303496 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304869 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304869 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 303176 304869 372 + . alignment_id 12 ; Query gi|805766358|ref|XP_012135239.1| ; Align 303176 16 72 ; Align 303248 42 249 ; Align 304435 125 138 ; Align 304573 172 237 ; Align 304810 253 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 365 Query range: 23 -> 271 Target range: 284526 -> 285285 24 : SerValArgLeuAsnArgTrpIleLeuLysProIleAlaAlaTrpProGluSerSerT : 43 ||||||!:!:!!|||||||||.!!||||||||||||!.!!.!|||||| ||| ! SerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuC 284527 : AGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCT : 284584 44 : hrValSerProMetLysLysTyrLeuSerTrpPheValHisValValCysTyrPheLe : 62 !|||!!! !!:!!:!!||| ! !||| ! !!:!! :!!:!! !!! !||||| ysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLe 284585 : GCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCT : 284641 63 : uMetSerPheLeuPheValProCysLeuIlePheLeuIleLeuGluValAsnGlyThr : 81 |!!:.!!||||||!!.||||||||| !:!:! ! !:!:|||!!: !!.!||| ! uIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAsp 284642 : GATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGAT : 284698 82 : TyrAsn<->ArgIleLysLeuPheGlyProLeuSerSerProLeuMetSerTyrSerL : 100 !:!! !:!||||||:!!.!!||||||||||||! ! !:!!|||:!! ! !| LeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleL 284699 : CTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCA : 284758 101 : ysTyrTyrLeuLeuLeuLeuHisLysAsnAspIleLeuLysCysValLysGlnIleGl : 119 ||||||||:!!|||:!!! !!.! ..! ! ||| !:!!|||||||||.!.|||.. ysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIleAr 284759 : AGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCG : 284815 120 : uTrpAspTrpArg<->AsnMetLysHisLeu<-><->GluGluLysArgIleMetVal : 135 . !|||||| ! !..:!:..!||| ||||||:::...|||||| ! gAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMetArg 284816 : TGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTGAGG : 284872 136 : AlaAsnAlaAsnTyrAlaArgArgIleValIleValCysThrPhePheMetCysSerS : 155 ! !!:!|||!.. !!.!||| !:!:!.!||| !!|||.!! !||||||! !|||. AspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerG 284873 : GACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCG : 284932 156 : erTyrMetPhePheTyrIleAlaValProIleThrValGlyArgIleProAlaGlnAs : 174 !! .!.|||!:! !! !.!:!!|||:!: !..!! !|||! ! ! || lyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIleAs 284933 : GAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGA : 284989 175 : pGlyAsnPheThrPheIleLeuLeuProPheProSerProMetArgIleThrAspTyr : 193 | ||| ||| ! ! !! !! ! !!||||||! ! ! !!:!! !||| p---AsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 284990 : C---AACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCG : 285043 194 : ArgGlnSerProValAsnGluIlePheTyrPheLeuGlnCysLeuAlaGlyIleLeuL : 213 ||| |||||| ! !|||||| ! ! |||:!!||||||||||||!.!.!!:!!: ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValI 285044 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTA : 285103 214 : euArgValIleThrAlaGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCy : 232 !! ! !:!!|||!.!|||||||||||||||||||||..!|||!.!:!!|||!.!|| leTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCy 285104 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTG : 285160 233 : sGlyGlnMetGluIleLeuMetAsnTrpLeuGlyTyrLeuValAsnGlyArgAlaAsp : 251 |||||||.!...!||||||:!!!.. !|||! ! ! ||||||:!!||| ! !! sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLysGly 285161 : TGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGG : 285217 252 : MetSer<-><->LysAsnLeuAspGlyArgIleAlaArgIleValGluGlnHisValA : 269 ! !!.! !..!..! !!!: !|||:!:!.! !|||:!!|||!!.|||:!!! ArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuL 285218 : AGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGA : 285277 270 : rgIleLeu : 271 :!|||||| ysIleLeu 285278 : AGATACTG : 285285 vulgar: gi|805766358|ref|XP_012135239.1| 23 271 . KQ414889.1 284526 285285 + 365 M 60 180 G 0 3 M 40 120 G 0 3 M 5 15 G 0 6 M 46 138 G 1 0 M 78 234 G 0 6 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284527 285285 365 + . gene_id 13 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284527 285285 . + . KQ414889.1 exonerate:protein2genome:local exon 284527 285285 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284527 285285 365 + . alignment_id 13 ; Query gi|805766358|ref|XP_012135239.1| ; Align 284527 24 180 ; Align 284710 84 120 ; Align 284833 124 15 ; Align 284854 129 138 ; Align 284992 176 234 ; Align 285232 254 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 349 Query range: 23 -> 271 Target range: 278579 -> 279338 24 : SerValArgLeuAsnArgTrpIleLeuLysProIleAlaAlaTrpProGluSerSerT : 43 ||||||!:!:!!|||||||||.!!||||||||||||!.!!.!|||||| ||| ! SerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuC 278580 : AGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCT : 278637 44 : hrValSerProMetLysLysTyrLeuSerTrpPheValHisValValCysTyrPheLe : 62 !|||!!! !!:!!:!!||| ! !||| ! !!:!! :!!:!! !!! !||||| ysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLe 278638 : GCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCT : 278694 63 : uMetSerPheLeuPheValProCysLeuIlePheLeuIleLeuGluValAsnGlyThr : 81 |!!:.!!||||||!!.||||||||| !:!:! ! !:!:|||!!: !!.!||| ! uIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAsp 278695 : GATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGAT : 278751 82 : TyrAsn<->ArgIleLysLeuPheGlyProLeuSerSerProLeuMetSerTyrSerL : 100 !:!! !:!||||||:!!.!!||||||||||||! ! ! !|||:!! ! !| LeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrIleL 278752 : CTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCA : 278811 101 : ysTyrTyrLeuLeuLeuLeuHisLysAsnAspIleLeuLysCysValLysGlnIleGl : 119 ||||||||:!!|||:!!! !!.! ..! ! ||| !|||||||||!!..!.|||.. ysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIleAr 278812 : AATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCG : 278868 120 : uTrpAspTrpArg<-><-><->AsnMetLysHisLeuGluGluLysArgIleMetVal : 135 . !|||||| ! ::: :::... ||||||:::...|||||| ! gThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMetArg 278869 : TACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTGAGG : 278925 136 : AlaAsnAlaAsnTyrAlaArgArgIleValIleValCysThrPhePheMetCysSerS : 155 ! !!:!|||!.. !!.!||| !:!:!.!||| !! !!.!! !||||||! !|||. AspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerG 278926 : GACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCG : 278985 156 : erTyrMetPhePheTyrIleAlaValProIleThrValGlyArgIleProAlaGlnAs : 174 !! :!:|||!:! ! !!.!:!!|||:!: !!.!! !|||! ! ! || lyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIleAs 278986 : GCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGA : 279042 175 : pGlyAsnPheThrPheIleLeuLeuProPheProSerProMetArgIleThrAspTyr : 193 | ||| ||| ! ! !! !! ! !!||||||! ! ! !!:!! !||| p---AsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 279043 : C---AATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCG : 279096 194 : ArgGlnSerProValAsnGluIlePheTyrPheLeuGlnCysLeuAlaGlyIleLeuL : 213 ||| |||||| ! !|||||| ! ! |||:!!||||||||||||!.!.!!:!!| ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValL 279097 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTT : 279156 214 : euArgValIleThrAlaGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCy : 232 || ! !:!!|||!.!||||||||||||||| !|||..!|||!.!:!!|||!.!|| euTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCy 279157 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTG : 279213 233 : sGlyGlnMetGluIleLeuMetAsnTrpLeuGlyTyrLeuValAsnGlyArgAlaAsp : 251 |||||||.!...!||||||:!!!.. !|||! ! ! |||:!!:!!||| ! !! sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLysGly 279214 : TGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGG : 279270 252 : MetSer<-><->LysAsnLeuAspGlyArgIleAlaArgIleValGluGlnHisValA : 269 ! !!.! !..!..! !!!: !|||:!:!.! !|||:!!|||!!.|||:!!! ArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuL 279271 : AGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGA : 279330 270 : rgIleLeu : 271 :!|||||| ysIleLeu 279331 : AGATACTG : 279338 vulgar: gi|805766358|ref|XP_012135239.1| 23 271 . KQ414889.1 278579 279338 + 349 M 60 180 G 0 3 M 40 120 G 0 9 M 51 153 G 1 0 M 78 234 G 0 6 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278580 279338 349 + . gene_id 14 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278580 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278580 279338 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278580 279338 349 + . alignment_id 14 ; Query gi|805766358|ref|XP_012135239.1| ; Align 278580 24 180 ; Align 278763 84 120 ; Align 278892 124 153 ; Align 279045 176 234 ; Align 279285 254 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 269 Query range: 16 -> 272 Target range: 289717 -> 290482 17 : TyrLeuLysAsnValAspLeuSerValArgLeuAsnArgTrpIleLeuLysProIleA : 36 ||| !! !:!!:!! !! !!!! !!..!||| !!.!||||||||||||||||||! TyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleLeuLysProIleG 289718 : TACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAG : 289775 37 : laAlaTrpPro<->GluSerSerThrValSerProMetLysLysTyrLeuSerTrpPh : 54 .! !!::||| ! ! !||| !!.!||| ! :!!::! !||| !!! lyMetTyrProPheValPheSerArgAlaSerArgArgGluArgThrAlaSerValLe 289776 : GCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTT : 289832 55 : eValHisValValCysTyrPheLeuMetSerPheLeuPheValProCysLeuIlePhe : 73 .:!! !:!!||||||! !! :!!:!:..!|||:!!.!.||||||! ! ! ! ! uLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValProPheSerHisHis 289833 : GCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCAC : 289889 74 : LeuIleLeuGluValAsnGlyThrTyrAsnArgIleLysLeuPheGlyProLeuSerS : 93 :!!:!!!!!...! !|||! !! ! !!!.. !:!!||| !.!!|||||||||!!!! ValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuGlyProLeuThrP 289890 : GTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGT : 289949 94 : erProLeuMetSerTyrSerLysTyrTyrLeuLeuLeuLeuHisLysAsnAspIleLe : 112 ! !|||! !!!!:!! !||||||! !! !!!! !:!! ! :::! ||| heCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGlySerAlaIleGl 289950 : TCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGG : 290006 113 : uLysCysValLysGlnIleGluTrpAspTrpArgAsnMetLysHisLeuGluGluLys : 131 !:::|||||||||!!.|||||| ! ||||||!:!! :!!::: !! !!!:.!.::: yArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAspGluAspHisArg 290007 : TCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGT : 290063 132 : ArgIleMetValAlaAsnAlaAsnTyrAlaArgArgIleValIleValCysThrPheP : 151 !||||||:!! ! !!!.!!.. ::!|||!.!:!!:!!! !:!!|||.!!.!!| ValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysLeuCysAlaIleP 290064 : GTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCT : 290123 152 : heMetCysSerSerTyrMetPhePheTyrIleAlaValProIleThrValGlyArgIl : 170 ||:!!! !! !.!! !:!!! !!:! !!! !!.!:!!|||:!: ! ! !!:! heLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPheSerLysLys-- 290124 : TCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAAG-- : 290180 171 : eProAlaGlnAspGlyAsnPheThrPheIleLeuLeuProPheProSerProMetArg : 189 ::! !:!!|||||| ! |||.!!! !! !||| !!!:!|||.!! ! !..! ----SerValAsnGlyAsnValThrIleArgProLeuThrTyrProGlyTyrGluGlu 290181 : ----AGCGTGAACGGTAACGTGACTATCAGACCTCTAACTTATCCCGGTTACGAGGAG : 290231 190 : IleThrAspTyrArgGlnSerProValAsnGluIlePheTyrPheLeuGlnCysLeuA : 209 .!! !||| !!:!:!!||||||!.! !!|||||| !!!:!! !:!!!!.|||:!! PhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetHisCysValT 290232 : TTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCT : 290291 210 : laGlyIleLeuLeuArgValIleThrAlaGlyAlaCysSerLeuAlaAlaThrPheAl : 228 !! !!!::!! ! ! !|||||| !!.!|||! !||||||.!!.!!! !||||| yrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePheAl 290292 : ACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGC : 290348 229 : aValHisAlaCysGlyGlnMetGluIleLeuMetAsnTrpLeuGlyTyrLeuValAsn : 247 |..!|||.!!|||||||||!!::!!|||! !! !!.. !!|||! ! !!|||..!!!. aThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAspLeuThrLys 290349 : CACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTGACAAAG : 290405 248 : GlyArgAlaAspMetSerLysAsnLeuAspGlyArgIleAlaArgIleValGluGlnH : 267 !! !! ! :!!..!|||...:!!..!! !|||:!:||| !:!!|||... | ArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValValValSerGlyH 290406 : AGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTGTGAGCGGTC : 290465 268 : isValArgIleLeuArg : 272 |||||..!||||||!:! isValGluIleLeuLys 290466 : ACGTGGAGATCTTGAAG : 290482 vulgar: gi|805766358|ref|XP_012135239.1| 16 272 . KQ414889.1 289717 290482 + 269 M 23 69 G 0 3 M 130 390 G 2 0 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289718 290482 269 + . gene_id 15 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289718 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289718 290482 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289718 290482 269 + . alignment_id 15 ; Query gi|805766358|ref|XP_012135239.1| ; Align 289718 17 69 ; Align 289790 40 390 ; Align 290180 172 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 229 Query range: 268 -> 358 Target range: 224128 -> 224658 269 : ArgIleLeuArgPheLeuGluLeuThrGluLysThrLeuArgTyrIleSerLeuValG : 288 !:! !! !||||||||| !! !|||||||||.!!|||!:! ! :!!|||!!!|||| LysCysCysArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValG 224129 : AAATGTTGCAGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGG : 224186 289 : luPheLeuGlyCysThrValGluLeuCysLeuLeuGlyTyrCysValLeuMetCys{A : 307 ||||||||||||||! !:!!.!.:!!|||||||||||||||! !|||:!!:!! {! luPheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleValVal{G 224187 : AATTTCTAGGCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTGGTA{C : 224243 308 : } >>>> Target Intron 1 >>>> {rg}LysIleAlaGluIleSerTyrMet : 315 } 260 bp {:!}||||||...::!:!:||||||||| }+- -+{ln}LysIleGlyGlnValSerTyrMet 224244 : }ga.........................tg{aa}aaaattggacaAGTGTCGTACATG : 224527 316 : IleAspTrpHisArgLeuLeuGlyLysArgLysLeuSerMetIleLeuIleMetGlnM : 335 |||||||||:!!|||||| !|||!!.!:!||||||!!! |||||||||!!: !| IleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaM 224528 : ATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGA : 224587 336 : etSerHisSerThrIleLysLeuThrAlaGlyAsnIleAlaValLeuSerTyrArgLy : 354 |||||:!!|||:!!|||||||||||||||||||||!!:!.!! !|||!!! ! !! etSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrTh 224588 : TGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCAC : 224644 355 : sPheGlyAspVal : 358 |||||||||||| rPheGlyAspVal 224645 : TTTCGGTGACGTA : 224658 vulgar: gi|805766358|ref|XP_012135239.1| 268 358 . KQ414889.1 224128 224658 + 229 M 38 114 S 0 1 5 0 2 I 0 256 3 0 2 S 1 2 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224129 224658 229 + . gene_id 16 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224129 224243 . + . KQ414889.1 exonerate:protein2genome:local exon 224129 224243 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224244 224245 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 224244 224503 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224502 224503 . + . intron_id 0 ; splice_site "tg" KQ414889.1 exonerate:protein2genome:local cds 224504 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224504 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224129 224658 229 + . alignment_id 16 ; Query gi|805766358|ref|XP_012135239.1| ; Align 224129 269 114 ; Align 224506 308 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 221 Query range: 189 -> 275 Target range: 202712 -> 203164 190 : IleThrAspTyrArgGlnSerProValAsnGluIlePheTyrPheLeuGlnCysLeuA : 209 |||! !||| !||| ! |||||||||||||||||||||!:!! :!!!:! !:!!| IleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleValA 202713 : ATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAG : 202770 210 : laGlyIleLeuLeuArgValIleThrAlaGlyAlaCysSerLeuAlaAlaThrPheAl : 228 ||! !||||||:!!!.!! !:!!|||!.!|||||||||!!!|||.!!||| !||||| laValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAl 202771 : CTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGC : 202827 229 : aValHisAlaCysGlyGlnMetGluIleLeuMetAsnTrpLeuGlyTyrLeuValAsn : 247 |||||||! !||||||||||||!!::!!|||||| !||||||! !:!!|||:!!:!! aValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMetAsp 202828 : GGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGAT : 202884 248 : GlyArgAlaAspMetSerLys >>>> Target Intron 1 >>>> AsnLeuAs : 257 ||||||:!!|||||||||||| 194 bp |||:!!:! GlyArgSerAspMetSerLys-+ +-AsnValAs 202885 : GGTCGTTCGGATATGAGTAAAat.........................aaAATGTGAA : 203108 258 : pGlyArgIleAlaArgIleValGluGlnHisValArgIleLeuArgPheLeuGlu : 275 !||||||!!:!.!! !||||||...||||||:!!|||||||||!:!! !:!!||| nGlyArgMetValThrIleValSerGlnHisIleArgIleLeuLysCysValGlu 203109 : TGGCAGAATGGTGACCATCGTGAGCCAACACATACGGATACTGAAATGTGTGGAA : 203164 vulgar: gi|805766358|ref|XP_012135239.1| 189 275 . KQ414889.1 202712 203164 + 221 M 65 195 5 0 2 I 0 190 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202713 203164 221 + . gene_id 17 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 202713 202907 . + . KQ414889.1 exonerate:protein2genome:local exon 202713 202907 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 202908 202909 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 202908 203101 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 203100 203101 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 203102 203164 . + . KQ414889.1 exonerate:protein2genome:local exon 203102 203164 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202713 203164 221 + . alignment_id 17 ; Query gi|805766358|ref|XP_012135239.1| ; Align 202713 190 195 ; Align 203102 255 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 181 Query range: 307 -> 373 Target range: 211779 -> 212081 308 : LysIleAlaGluIleSerTyrMetIleAspTrpHisArgLeuLeuGlyLysArgLysL : 327 |||:!!!.!|||! ||||||||||||||||||:!!|||:!!! !||||||!:! | LysValGlyGluLysSerTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyL 211780 : AAAGTTGGAGAAAAGTCTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTT : 211837 328 : euSerMetIleLeuIleMetGlnMetSerHisSerThrIleLysLeuThrAlaGlyAs : 346 || !:!: !|||!!:!!:...|||||||||||||||! !|||:!!||||||||||| euValValProLeuMetIleSerMetSerHisSerThrThrLysIleThrAlaGlyAs 211838 : TGGTCGTACCCTTGATGATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAA : 211894 347 : nIleAlaValLeuSerTyrArgLysPheGlyAsp >>>> Target Intron 1 > : 358 |:!! !||||||||| !!!!!..||||||||| 104 bp nLeuIleValLeuSerIleSerSerPheGlyAsp++ 211895 : TCTCATCGTTCTTTCAATCAGTAGTTTCGGTGACgt...................... : 211932 359 : >>> ValValLysSerAlaPheAlaPheLeuAsnValLeuArgThrValThr : 373 |||:!!|||!!!:!! ! .!!!:!||||||:!!||||||||| !!||| ++ValIleLysThrSerValThrTyrLeuAsnMetLeuArgThrPheThr 211933 : ...agGTTATCAAGACTTCGGTAACATACTTGAACATGCTACGAACATTCACA : 212081 vulgar: gi|805766358|ref|XP_012135239.1| 307 373 . KQ414889.1 211779 212081 + 181 M 50 150 5 0 2 I 0 100 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 211780 212081 181 + . gene_id 18 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 211780 211929 . + . KQ414889.1 exonerate:protein2genome:local exon 211780 211929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 211930 211931 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 211930 212033 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 212032 212033 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 212034 212081 . + . KQ414889.1 exonerate:protein2genome:local exon 212034 212081 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 211780 212081 181 + . alignment_id 18 ; Query gi|805766358|ref|XP_012135239.1| ; Align 211780 308 150 ; Align 212034 358 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 181 Query range: 303 -> 373 Target range: 230241 -> 230518 304 : LeuMetCysArgLysIleAlaGluIleSerTyrMetIleAspTrpHisArgLeuLeuG : 323 |||..!|||||||||:!!!.!|||! ||||||||||||!!:|||:!!|||||| !| LeuGlnCysArgLysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrG 230242 : TTACAGTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCG : 230299 324 : lyLysArgLysLeuSerMetIleLeuIleMetGlnMetSerHisSerThrIleLysLe : 342 ||!!.!:!||||||!!! |||||||||!!: ||||||:!!!!!:!!! |||!! lyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPh 230300 : GAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATT : 230356 343 : uThrAlaGlyAsnIleAlaValLeuSerTyrArgLysPheGlyAsp >>>> Targe : 358 !||||||||||||!!:!.!! !|||||| !.!! |||.!!||| eThrAlaGlyAsnMetValGluLeuSerValAsnThrPheSerAsp++ 230357 : TACAGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGACgt.......... : 230406 359 : t Intron 1 >>>> ValValLysSerAlaPheAlaPheLeuAsnValLeuArgTh : 371 67 bp |||||||||!!!:!!.!.!.!|||||||||:!!|||||||| ++ValValLysThrSerMetGlyPheLeuAsnMetLeuArgTh 230407 : ...............agGTCGTTAAAACGTCCATGGGTTTCTTAAACATGCTACGAAC : 230510 372 : rValThr : 373 |:!!||| rLeuThr 230511 : ACTGACG : 230518 vulgar: gi|805766358|ref|XP_012135239.1| 303 373 . KQ414889.1 230241 230518 + 181 M 54 162 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230242 230518 181 + . gene_id 19 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 230242 230403 . + . KQ414889.1 exonerate:protein2genome:local exon 230242 230403 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 230404 230405 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 230404 230470 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 230469 230470 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230471 230518 . + . KQ414889.1 exonerate:protein2genome:local exon 230471 230518 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230242 230518 181 + . alignment_id 19 ; Query gi|805766358|ref|XP_012135239.1| ; Align 230242 304 162 ; Align 230471 358 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 305 -> 373 Target range: 287063 -> 287338 306 : CysArgLysIleAlaGluIleSerTyrMetIleAspTrpHisArgLeuLeuGlyLysA : 325 ||| !|||:!!!.! ! !!!!|||||||||||||||:!!||||||! !||||||! CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysT 287064 : tGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAA : 287121 326 : rgLysLeuSerMetIleLeuIleMetGlnMetSerHisSerThrIleLysLeuThrAl : 344 ! ! !.!!:!!|||||||||.!. :!!|||:!!|||:!!|||||||||||||| hrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 287122 : CAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 287178 345 : aGlyAsnIleAlaValLeuSerTyrArgLysPheGlyAsp >>>> Target Intr : 358 ||||!!.||| !! !||||||! !!!!..||| !!..! 71 bp aGlyLysIleIleAspLeuSerLeuSerSerPheCysSer++ 287179 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt................ : 287222 359 : on 1 >>>> ValValLysSerAlaPheAlaPheLeuAsnValLeuArgThrValTh : 373 |||:!!|||||||||||||||!:!|||!:!:!!|||||||||:!!|| ++ValLeuLysSerAlaPheAlaTyrLeuSerLeuLeuArgThrLeuTh 287223 : .........agGTGTTGAAATCGGCATTCGCATATCTGAGCTTATTACGTACGCTAAC : 287336 374 : r : 373 | r 287337 : C : 287338 vulgar: gi|805766358|ref|XP_012135239.1| 305 373 . KQ414889.1 287063 287338 + 166 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287064 287338 166 + . gene_id 20 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 287064 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287220 287221 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 287220 287290 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287289 287290 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 287291 287338 . + . KQ414889.1 exonerate:protein2genome:local exon 287291 287338 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287064 287338 166 + . alignment_id 20 ; Query gi|805766358|ref|XP_012135239.1| ; Align 287064 306 156 ; Align 287291 358 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 304 -> 373 Target range: 273014 -> 273302 305 : MetCysArgLysIleAlaGluIleSerTyrMetIleAspTrpHisArgLeuLeuGlyL : 324 ...|||:::||||||...|||:!! !||||||! :!!|||:!! !|||! !|||| GlnCysLysLysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProGlyL 273015 : cagtgtaaaaaaattggcGAGGTAGTTTACATGACGAACTGGTACTATTTACCCGGCA : 273072 325 : ysArgLysLeuSerMetIleLeuIleMetGlnMetSerHisSerThrIleLysLeuTh : 343 || !! |||..!:!!|||||||||!!:..!! !!! ! !..!||||||:!!|| ysAspIleLeuAspLeuIleLeuIleIleSerArgCysSerValValIleLysIleTh 273073 : AAGATATCCTCGATCTGATTTTGATCATCTCAAGATGCAGTGTTGTGATTAAAATCAC : 273129 344 : rAlaGlyAsnIleAlaValLeuSerTyrArgLysPheGlyAsp >>>> Target I : 358 |||||||!..|||!.! !:!!||| !! !||||||||| 81 rAlaGlyArgIleValProMetSerValTyrThrPheGlyAsp++ 273130 : CGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTCGGCGATgt............. : 273176 359 : ntron 1 >>>> ValValLysSerAlaPheAlaPheLeuAsnValLeuArgThrVa : 372 bp |||:!!|||||||||||||||!:!||||||:!!|||||| !.. ++ValMetLysSerAlaPheAlaTyrLeuAsnMetLeuArgGlnTh 273177 : ............aggtGATGAAAAGTGCGTTCGCGTACTTAAATATGCTACGACAAAC : 273297 373 : lThr : 373 !||| rThr 273298 : GACA : 273302 vulgar: gi|805766358|ref|XP_012135239.1| 304 373 . KQ414889.1 273014 273302 + 155 M 53 159 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 273015 273302 155 + . gene_id 21 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 273015 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273015 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 273015 273302 155 + . alignment_id 21 ; Query gi|805766358|ref|XP_012135239.1| ; Align 273015 305 159 ; Align 273255 358 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 22 -> 133 Target range: 200538 -> 200878 23 : LeuSerValArgLeuAsnArgTrpIleLeuLysProIleAlaAlaTrpProGluSerS : 42 :!!!!!:!!!:!! !|||||||||||||||||| !!!!:||| !||| !!!:!.!| ValCysIleGlnTrpAsnArgTrpIleLeuLysSerMetAlaLeuTrpPheAspLysS 200539 : GTTTGCATACAGTGGAATCGTTGGATCTTGAAATCAATGGCTTTGTGGTTTGACAAAT : 200596 43 : erThrValSerProMetLysLysTyrLeu-SerTrpPheValHisValValCysTyrP : 61 ||!.!:!!||||||:!::!!|||!! |||#!!! !!.!.:!! !!.!||||||!! erAsnIleSerProValGluLys***Leu#ThrArgLeuIleSerAlaValCys***G 200597 : CCAACATTTCACCGGTCGAGAAATAACTACACTCGGCTAATCAGTGCCGTTTGTTAAG : 200654 62 : heLeuMetSerPheLeuPheValProCysLeuIlePheLeuIleLeuGluValAsnGl : 80 ||||||...:::......::: ||| !:!! !:!!.!!|||!!:|||.!... lyLeuMetGlyTyrPheLeuIleLeuCysSerLeuHisValPheLeuAspValGluAs 200655 : GATTGATGggttactttttaatattatgcAGTTTACACGTGTTTCTTGACGTAGAAAA : 200711 81 : yThrTyrAsnArgIleLysLeuPheGlyProLeu<->SerSerProLeuMetSerTyr : 98 !! ! !!!.!:!||||||||||||! !|||||| ! ! !||| !!! ! nIleLeuLysLysIleLysLeuPheValProLeuValLeuLeuCysLeuAlaThrIle 200712 : TATACTTAAAAAGATTAAATTGTTTGTTCCCCTAGTACTACTTTGCTTGGCTACGATT : 200768 99 : SerLysTyrTyrLeuLeuLeuLeuHisLysAsnAspIleLeuLysCysValLysGlnI : 118 ! !|||! !:!!|||! !:!!|||||| ! :!!|||! !! !! !|||! !:!!!!.| LeuLysCysHisLeuSerValLeuHisAspAspAspThrTyrThrCysGlyGluHisI 200769 : TTGAAGTGTCATTTGTCGGTACTTCATGATGACGATACTTACACGTGTGGCGAGCATA : 200828 119 : leGluTrpAspTrpArgAsn<->MetLysHisLeuGluGluLysArgIle : 133 ||:!!|||!!:|||||| !! :!:! !||| !|||:::|||:::||| leLysTrpGluTrpArgTyrCysValThrHisAspGluAspLysLysIle 200829 : TAAAATGGGAGTGGAGGTATTGTGTCACGCACGACgaggataaaaaaatt : 200878 vulgar: gi|805766358|ref|XP_012135239.1| 22 133 . KQ414889.1 200538 200878 + 152 M 29 87 F 0 1 M 40 120 G 0 3 M 33 99 G 0 3 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 200539 200878 152 + . gene_id 22 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 200539 200878 . + . KQ414889.1 exonerate:protein2genome:local exon 200539 200878 . + . insertions 6 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local similarity 200539 200878 152 + . alignment_id 22 ; Query gi|805766358|ref|XP_012135239.1| ; Align 200539 23 87 ; Align 200627 52 120 ; Align 200750 92 99 ; Align 200852 125 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 175 -> 272 Target range: 300189 -> 300477 176 : AsnPheThrPheIleLeuLeuProPheProSerProMetArgIleThrAspTyrArgG : 195 |||!:!|||!:!! !! !||| !!!:!|||.!! ! !!.!!! !||| !:! AsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnT 300190 : AATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAA : 300247 196 : lnSerProValAsnGluIlePheTyrPheLeuGlnCysLeuAlaGlyIleLeuLeuAr : 214 ||||||..! !!|||||| :::|||......|||.!!|||!.!!!::!!:!! hrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTy 300248 : CCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTA : 300304 215 : gValIleThrAlaGlyAlaCysSerLeuAlaAlaThrPheAlaValHisAlaCysGly : 233 ! !:!:|||.!!!.!|||! !||||||||||||! !|||!.!..!||| !|||||| rAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGly 300305 : CAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGA : 300361 234 : GlnMetGluIleLeuMetAsnTrpLeuGlyTyrLeuValAsnGlyArgAlaAspMetS : 253 |||!!::!!|||! !||| ! |||! ! !!||||||.!. !!! !!.!!!:! !. GlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrGlyGluLysA 300362 : CAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGGGAGAGAAGG : 300421 254 : erLysAsnLeuAspGlyArgIleAlaArgIleValGluGlnHisValArgIleLeuAr : 272 .! ! ..!! !||| ! !:!!!.! ||||||..!.!.||||||!:!:!!||||| spAspGlyProAspProLeuValVal---IleValArgAspHisValLysValLeuAr 300422 : ACGACGGTCCTGATCCTTTGGTCGTT---ATCGTTCGAGATCACGTGAAGGTTTTAAG : 300475 273 : g : 272 | g 300476 : G : 300477 vulgar: gi|805766358|ref|XP_012135239.1| 175 272 . KQ414889.1 300189 300477 + 142 M 86 258 G 1 0 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300190 300477 142 + . gene_id 23 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 300190 300477 . + . KQ414889.1 exonerate:protein2genome:local exon 300190 300477 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 300190 300477 142 + . alignment_id 23 ; Query gi|805766358|ref|XP_012135239.1| ; Align 300190 176 258 ; Align 300448 263 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 305 -> 358 Target range: 280276 -> 280435 306 : CysArgLysIleAlaGluIleSerTyrMetIleAspTrpHisArgLeuLeuGlyLysA : 325 ||| !|||:!!!.!! ! !!!!|||||||||||||||:!!||||||! !||||||! CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysL 280277 : TGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGA : 280334 326 : rgLysLeuSerMetIleLeuIleMetGlnMetSerHisSerThrIleLysLeuThrAl : 344 :! !! !.!!:!!|||||||||.!. :!!|||:!!|||:!!|||||||||||||| ysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 280335 : AAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 280391 345 : aGlyAsnIleAlaValLeuSerTyrArgLysPheGlyAspVal : 358 ||||!!.||| !! !||||||! !!!!..||| !!..!||| aGlyLysIleIleAspLeuSerLeuSerSerPheCysSerVal 280392 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTG : 280435 vulgar: gi|805766358|ref|XP_012135239.1| 305 358 . KQ414889.1 280276 280435 + 128 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280277 280435 128 + . gene_id 24 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280277 280435 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280435 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280277 280435 128 + . alignment_id 24 ; Query gi|805766358|ref|XP_012135239.1| ; Align 280277 306 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 304 -> 364 Target range: 238625 -> 238805 305 : MetCysArgLysIleAlaGluIleSerTyrMetIleAspTrpHisArgLeuLeuGlyL : 324 ..!||| !|||:!!!.!|||:!: !||||||! !||||||:!! !|||! ! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 325 : ysArgLysLeuSerMetIleLeuIleMetGlnMetSerHisSerThrIleLysLeuTh : 343 :!|||! |||..!:!:|||||||||!!::!! |||:!! !..!:!!|||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 344 : rAlaGlyAsnIleAlaValLeuSerTyrArgLysPheGlyAspValValLysSerAla : 362 |||||||!!.:!! ! !:!!||| ! !! !|||||||||||| !:!!!!! ! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 363 : PheAla : 364 .!!||| LeuAla 238798 : CTTGCT : 238805 vulgar: gi|805766358|ref|XP_012135239.1| 304 364 . KQ414889.1 238625 238805 + 123 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238805 123 + . gene_id 25 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238805 123 + . alignment_id 25 ; Query gi|805766358|ref|XP_012135239.1| ; Align 238626 305 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 11 -> 121 Target range: 299656 -> 299989 12 : LeuProGluGlnAspTyrLeuLysAsnValAspLeuSerValArgLeuAsnArgTrpI : 31 ||| !.!. ! !!|||! !!!.:!!:!! !!! !!!!:!!!:!:!! !!:!|||: LeuArgAsnTyrHisTyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpL 299657 : TTGAGGAATTACCATTACCAAAATGACATACATTACACGCTGCAAATGTGCCAATGGT : 299714 32 : leLeuLysProIleAlaAlaTrpPro<->GluSerSerThrValSerProMetLysLy : 49 !:||||||||||||!.!!.!|||! ! !..!..! ! !||| !:!!:!! ! euLeuLysProIleGlyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHi 299715 : TGTTGAAACCTATCGGAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACA : 299771 50 : sTyrLeuSerTrpPheValHisValValCysTyrPheLeuMetSerPheLeuPheVal : 68 !:!!||| !!:!! ..!:!!|||!:!! ! !:!!! !|||:!! !!:!! sLeuValSerIleValLeuMetThrIleCysPheSerSerLeuPhePheIleValLeu 299772 : CCTCGTCTCGATCGTTCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTG : 299828 69 : ProCysLeuIlePheLeuIleLeuGluValAsnGlyThrTyrAsnArgIleLysLeuP : 88 |||! ! ! !!:!:!!.!!!!!! !! !!!..!!! !:!! !!:!:!:|||:!!| ProSerGlyHisTyrIlePhePheAlaGluLysSerIleHisValLysValLysValP 299829 : CCATCCGGTCATTACATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTAT : 299888 89 : heGlyProLeuSerSerProLeuMetSerTyrSerLysTyrTyrLeuLeuLeuLeuHi : 107 ||||||||:!!.!!! ! !||| ||| ! !||||||! !! !|||! !|||:! heGlyProValGlyPheCysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAs 299889 : TCGGTCCGGTTGGTTTTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAA : 299945 108 : sLysAsnAspIleLeuLysCysValLysGlnIleGluTrpAsp : 121 ! ..!! .!! !::!|||:!!:!!!!.:!!||| ! ||| nGlyGlyAlaPheGluArgCysIleGlnHisValGluArgAsp 299946 : CGGTGGCGCGTTCGAACGATGCATCCAACACGTCGAGAGAGAC : 299989 vulgar: gi|805766358|ref|XP_012135239.1| 11 121 . KQ414889.1 299656 299989 + 116 M 28 84 G 0 3 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299657 299989 116 + . gene_id 26 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299657 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299657 299989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299657 299989 116 + . alignment_id 26 ; Query gi|805766358|ref|XP_012135239.1| ; Align 299657 12 84 ; Align 299744 40 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 304 -> 358 Target range: 277551 -> 277713 305 : MetCysArgLysIleAlaGluIleSerTyrMetIleAspTrpHisArgLeuLeuGlyL : 324 ..!|||!:!|||:!!!.!|||:!: !||||||! :!!|||:!! !|||! !! !| GlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAspL 277552 : CAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCGACA : 277609 325 : ysArgLysLeuSerMetIleLeuIleMetGlnMetSerHisSerThrIleLysLeuTh : 343 || !! |||!:!:!!:!!||||||!!:..!! ||| ! ...||||||:::|| ysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIleTh 277610 : AAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaattac : 277666 344 : rAlaGlyAsnIleAlaValLeuSerTyrArgLysPheGlyAspVal : 358 |||||||...::: :::||| !! !|||||||||||| rAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspVal 277667 : cgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTA : 277713 vulgar: gi|805766358|ref|XP_012135239.1| 304 358 . KQ414889.1 277551 277713 + 115 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277552 277713 115 + . gene_id 27 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277552 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277552 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277552 277713 115 + . alignment_id 27 ; Query gi|805766358|ref|XP_012135239.1| ; Align 277552 305 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 304 -> 358 Target range: 234985 -> 235147 305 : MetCysArgLysIleAlaGluIleSerTyrMetIleAspTrpHisArgLeuLeuGlyL : 324 ..!|||! !|||:!!!.!|||! ! !||||||! !!!:|||:!!||||||! ! !| GlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProHisL 234986 : CAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATA : 235043 325 : ysArgLysLeuSerMetIleLeuIleMetGlnMetSerHisSerThrIleLysLeuTh : 343 ||! ! |||.!!:!!:!!:!!|||!!:...! !||| !! !..!||||||:!!|| ysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleTh 235044 : AAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCAC : 235100 344 : rAlaGlyAsnIleAlaValLeuSerTyrArgLysPheGlyAspVal : 358 |||||||!!..!! ! !:!!||| ! !! !|||||||||||| rAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235101 : CGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: gi|805766358|ref|XP_012135239.1| 304 358 . KQ414889.1 234985 235147 + 114 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234986 235147 114 + . gene_id 28 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234986 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234986 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234986 235147 114 + . alignment_id 28 ; Query gi|805766358|ref|XP_012135239.1| ; Align 234986 305 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 307 -> 372 Target range: 292398 -> 292593 308 : LysIleAlaGluIleSerTyrMetIleAspTrpHisArgLeuLeuGlyLysArgLysL : 327 :!!||||||.!. !|||||| ! !!!:|||:!!!.!|||! ! !!::!!:! ! GluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgArgLysAlaA 292399 : GAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGGCTC : 292456 328 : euSerMetIleLeuIleMetGlnMetSerHisSerThrIleLysLeuThrAlaGlyAs : 346 !..!!!::!!|||:!::!: !!:!!! ! ! !!||||||||||||||||||!! rgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuThrAlaGlyLy 292457 : GTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGGCAA : 292513 347 : nIleAlaValLeuSerTyrArgLysPheGlyAspValValLysSerAlaPheAlaPhe : 365 .||| !|||||||||! !.!! ||||||! !||| !:!!||| !.!.!.!!!. sIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSerLysLeuValLeu 292514 : AATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCAAAACTAGTCTTG : 292570 366 : LeuAsnValLeuArgThrVal : 372 :!!:!! ! !|||! !||| IleHis***GluArgIleVal 292571 : ATACACTAAGAACGTATAGTT : 292593 vulgar: gi|805766358|ref|XP_012135239.1| 307 372 . KQ414889.1 292398 292593 + 100 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292399 292593 100 + . gene_id 29 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292399 292593 . + . KQ414889.1 exonerate:protein2genome:local exon 292399 292593 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292399 292593 100 + . alignment_id 29 ; Query gi|805766358|ref|XP_012135239.1| ; Align 292399 308 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766344|ref|XP_012135233.1| PREDICTED: uncharacterized protein LOC105661823 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 813 Query range: 11 -> 280 Target range: 217153 -> 219258 12 : GluHisGluArgAsnValAsnLeuSerIleLysTrpCysArgArgIleLeuThrIleI : 31 |||:::|||:::|||:::||||||||||||:!!||| !||| !!:!:|||! ! ! GluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProM 217154 : GAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGA : 217211 32 : leAlaValTrpProGlnSerProAspPheThrLeuLeuGlnLysCysPheTyrArgPh : 50 !:!.!:!!||||||.!.|||! ! ! !||| !! !!:!||| !.!!|||!:!.! etGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLe 217212 : TGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACT : 217268 51 : eArgAsnValMetIlePheSerPheLeuSerPheLeuCysValProCysThrIleTyr : 69 .! !|||!.!:!: !!:!.!!!!.:!!|||||||||! !|||||||||:!!!!:||| uIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyr 217269 : GATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTAC : 217325 70 : MetIleValGluValGluAspValTyrAsnLysIleLysValPheGlyProThrSerP : 89 :!!.!!:!!||||||||||||:!!|||:!!|||:!:|||:!!||||||||| !! !| ValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIleP 217326 : GTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCT : 217385 90 : heCysValMetAlaValIleLysTyrTyrLeuLeuIleLeuHisGluSerAspIleAr : 108 |||||||||||||| !!:!!|||||||||! !||||||:!!|||:!!:!!|||||||| heCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleAr 217386 : TCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCG : 217442 109 : gArgCysIleArgLeuIleGluLeuSerTrpLysGluIleThrHisProAspAspArg : 127 |..!|||:!:||| !||||||! !..!|||!:!.!.:!!! ! ! ! ! |||||| gGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArg 217443 : CGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGG : 217499 128 : GluIleMetIleLysAsnAlaArgTyrGlyArgGlnLeuIleAlaLeuCysThrLeuI : 147 ||| |||||| !||||||!.!!:!||||||:!!|||:!! !|||||||||!!!. GluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPheP 217500 : GAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCT : 217559 148 : leMetTyrSerGlyLeuThrPheTyrTyrValSerIleProIleGlySerGlyArgIl : 166 !!||||||||||||......|||||||||::!:!!|||||||||.!! !|||||||| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIl 217560 : TCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAAT : 217616 167 : eGluAspProGluGluAsnValThrPheIleProLeuMetPheProPheProLysLeu : 185 | !... !.!.! !|||:!!|||||||||||||||:!!||||||||| !!|||! ! eLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyr 217617 : TCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTAT : 217673 186 : IleValAspThrArgPheSerProThrAsnGluIleIlePheSerPheGlnMetMetS : 205 |||:!!|||||||||!:!!!!|||||||||||||||:!:|||! !.!!|||:!!!!:: IleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleA 217674 : ATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCG : 217733 206 : erAspAlaThrLeuHisGlyValSerSerAlaSerCysSerLeuAlaAlaMetLeuAl : 224 !!! ||| !:!!||||||:!!!!!||||||:!!||||||||||||||| !!!|| laGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAl 217734 : CTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGC : 217790 225 : aValHisIleCysGlyGlnMetGluValMetValAsnTrpLeuLysHisLeuValAsp : 243 ||||||| !|||||||||!!:||||||:!!:!!|||||||||:!!||||||:!!||| aValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAsp 217791 : GGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGAC : 217847 244 : Gly{Ar} >>>> Target Intron 1 >>>> {g}PheLeuGluLeuThrGluL : 252 |||{||} 1298 bp {|}|||||| !|||||||||! Gly{Ar}-- ++{g}PheLeuThrLeuThrGluA 217848 : GGT{AG}ag.........................ag{a}tttttgaCGCTCACAGAGA : 219172 253 : ysThrLeuArgTyrIleSerLeuValGluPheLeuGlyCysThrLeuAsnLeuCysLe : 271 :!||||||!:! ! ||||||!!!!.!||||||||||||||||||:!!:!!:!!||||| rgThrLeuGlnGlnIleSerPheAlaGluPheLeuGlyCysThrMetAspIleCysLe 219173 : GAACCCTCCAGCAAATCTCTTTCGCTGAATTTCTAGGATGCACCATGGACATATGTCT : 219229 272 : uLeuSerTyrTyrValLeuMetValArg : 280 |:!!.!!||||||:!!:!!:!!|||!:! uValGlyTyrTyrIleIleValValGln 219230 : CGTTGGATATTACATTATCGTGGTACAA : 219258 vulgar: gi|805766344|ref|XP_012135233.1| 11 280 . KQ414889.1 217153 219258 + 813 M 233 699 S 0 2 5 0 2 I 0 1294 3 0 2 S 1 1 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217154 219258 813 + . gene_id 1 ; sequence gi|805766344|ref|XP_012135233.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217154 217854 . + . KQ414889.1 exonerate:protein2genome:local exon 217154 217854 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217855 217856 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local intron 217855 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219258 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219258 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217154 219258 813 + . alignment_id 1 ; Query gi|805766344|ref|XP_012135233.1| ; Align 217154 12 699 ; Align 219154 246 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766344|ref|XP_012135233.1| PREDICTED: uncharacterized protein LOC105661823 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 730 Query range: 11 -> 245 Target range: 221357 -> 222059 12 : GluHisGluArgAsnValAsnLeuSerIleLysTrpCysArgArgIleLeuThrIleI : 31 !!::!!:!!! !||||||!!.||||||:!::!!! ! !!||| !!||||||! ! | AspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProI 221358 : GATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGA : 221415 32 : leAlaValTrpProGlnSerProAspPheThrLeuLeuGlnLysCysPheTyrArgPh : 50 ||!.!|||||||||.!.||| !!:!!.!!:!! !:!!:!!!:!! !.!!||| !!.! leGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLe 221416 : TCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 51 : eArgAsnValMetIlePheSerPheLeuSerPheLeuCysValProCysThrIleTyr : 69 .! !||||||:!: !!:!|||.!.:!!!!!||||||! |||||||||!:!:!!||| uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 70 : MetIleValGluValGluAspValTyrAsnLysIleLysValPheGlyProThrSerP : 89 :!!|||:!!|||||||||||||||||||||!:!||||||:!!!!.|||||| !|||| ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 90 : heCysValMetAlaValIleLysTyrTyrLeuLeuIleLeuHisGluSerAspIleAr : 108 |||||||||||||| !!:!!||||||:!!||||||||||||:!!|||!:!|||||||| heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 109 : gArgCysIleArgLeuIleGluLeuSerTrpLysGluIleThrHisProAspAspArg : 127 |..!||||||..!! !||||||! !..!||||||.!.||||||:!! !! ! |||!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 128 : GluIleMetIleLysAsnAlaArgTyrGlyArgGlnLeuIleAlaLeuCysThrLeuI : 147 !!:|||||||||:!!||||||! !!:!||||||!:!|||||| !:!!||||||!!!. AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 148 : leMetTyrSerGlyLeuThrPheTyrTyrValSerIleProIleGlySerGlyArgIl : 166 !!||||||||||||......|||||||||::!:!!||||||.!!.!! !|||!:!|| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 167 : eGluAspProGluGluAsnValThrPheIleProLeuMetPheProPheProLysLeu : 185 | ! ! !!!: ||||||||||||||||||:!!:!!||||||||| !!!:!!!! eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 186 : IleValAspThrArgPheSerProThrAsnGluIleIlePheSerPheGlnMetMetS : 205 |||||||||||||||!:!||||||..!|||||||||:!:||||||.!!|||!!:|||: IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 206 : erAspAlaThrLeuHisGlyValSerSerAlaSerCysSerLeuAlaAlaMetLeuAl : 224 !!! !||| !:!!|||.!!:!!!!!||||||:!!|||||||||!.!||||||!!!|| laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 225 : aValHisIleCysGlyGlnMetGluValMetValAsnTrpLeuLysHisLeuValAsp : 243 ||||||| !||||||||||||:!!|||:!!:!!!:!|||||||||||||||:!!:!! aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 244 : GlyArg : 245 |||||| GlyArg 222052 : GGCCGG : 222059 vulgar: gi|805766344|ref|XP_012135233.1| 11 245 . KQ414889.1 221357 222059 + 730 M 234 702 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221358 222059 730 + . gene_id 2 ; sequence gi|805766344|ref|XP_012135233.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221358 222059 . + . KQ414889.1 exonerate:protein2genome:local exon 221358 222059 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221358 222059 730 + . alignment_id 2 ; Query gi|805766344|ref|XP_012135233.1| ; Align 221358 12 702 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766344|ref|XP_012135233.1| PREDICTED: uncharacterized protein LOC105661823 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 671 Query range: 12 -> 307 Target range: 212854 -> 214648 13 : HisGluArgAsnValAsnLeuSerIleLysTrpCysArgArgIleLeuThrIleIleA : 32 :!!|||!:!...||||||||||||||| !||| !||| !!:!!|||! ! !! ! TyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrG 212855 : TACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGG : 212912 33 : laValTrpProGlnSerProAspPheThrLeuLeuGlnLysCysPheTyrArgPheAr : 51 .!:!!||||||.!.!.! !! !! !!:!!! !:!!:!!||| !.!! !|||!!. lyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIleAlaArgLeuVa 212913 : GTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGT : 212969 52 : gAsnValMetIlePheSerPheLeuSerPheLeuCysValProCysThrIleTyrMet : 70 !|||..!:!: !!:!.!!!!.:!!.!!!:!||| :!!||||||!:!:!:|||:!! lAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrVal 212970 : CAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTG : 213026 71 : IleValGluValGluAspValTyrAsnLysIleLysValPheGlyProThrSerPheC : 90 .!!:!!!!:||||||:::::::::...:::|||:!!:!!|||||| ! !:!!|||| PheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheC 213027 : TTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTT : 213086 91 : ysValMetAlaValIleLysTyrTyrLeuLeuIleLeuHisGluSerAspIleArgAr : 109 ||||| |||:!! ||||||:!!! !||||||||||||! ..!|||||||||! ysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgTh 213087 : GCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTAC : 213143 110 : gCysIleArgLeuIleGluLeuSerTrpLysGluIleThrHisProAspAspArgGlu : 128 !|||:!!..!! !!!::!!! !..!||||||.!.||||||||| !!!:|||!:!||| rCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGlu 213144 : GTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAA : 213200 129 : IleMetIleLysAsnAlaArgTyrGlyArgGlnLeuIleAlaLeuCysThrLeuIleM : 148 |||||| !||||||!!!!:!|||!:!::!:!!:!:.!!:!!|||.!!!!!.!!| IleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPhePheM 213201 : ATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCA : 213260 149 : etTyrSerGlyLeuThrPheTyrTyrValSerIleProIleGlySerGlyArgIleGl : 167 |||||!!!|||!!!|||||||||!:!:!! !:!!||||||.!!:!!! !!:!!!:! etTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLysMetVa 213261 : TGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGT : 213317 168 : uAspProGluGluAsnValThrPheIleProLeuMetPheProPheProLysLeuIle : 186 !! !!!: ||||||||||||! !! !:!!:!! !!||| !! !!!:!!!!||| lAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSerArgPheIle 213318 : AGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATC : 213374 187 : ValAspThrArgPheSerProThrAsnGluIleIlePheSerPheGlnMetMetSerA : 206 ||||||..!|||!:!||||||..!|||||||||.!!|||! !.!!|||!!:!!::!!! ValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleIleAlaG 213375 : GTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTG : 213434 207 : spAlaThrLeuHisGlyValSerSerAlaSerCysSerLeuAlaAlaMetLeuAlaVa : 225 !.! !:!!|||!.!:!!:!! !!.!:!!|||||||||||||||:!!!!!||||| lyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPheAlaVa 213435 : GAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGT : 213491 226 : lHisIleCysGlyGlnMetGluValMetValAsnTrpLeuLysHisLeuValAspGly : 244 |||| !||||||||||||! :!!:!!:!!!:!||||||:!!||||||:!!|||||| lHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGly 213492 : TCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGT : 213548 245 : {Ar} >>>> Target Intron 1 >>>> {g}PheLeuGluLeuThrGluLysT : 253 {||} 909 bp {|}||||||||||||..!||||||. {Ar}-- ++{g}PheLeuGluLeuValGluLysA 213549 : {AG}ag.........................ag{A}TTCTTAGAGCTCGTGGAGAAAG : 214484 254 : hrLeuArgTyrIleSerLeuValGluPheLeuGlyCysThrLeuAsnLeuCysLeuLe : 272 !!|||||| ! :!!|||!!!!.!|||!!.|||! !||||||:!!||||||||||||:! laLeuArgGlnValSerPheAlaGluLeuLeuValCysThrValAsnLeuCysLeuVa 214485 : CACTTCGGCAAGTATCTTTCGCTGAATTATTAGTATGCACGGTGAATCTCTGTCTCGT : 214541 273 : uSerTyrTyrValLeuMetValArgThrAsnGluAlaValAsnArgPheSerIleAsp : 291 !.!!||||||:!!:!!! !||| !!! !...... ||| ...||| lGlyTyrTyrIleIleThrValCysArgGlyHisLysAsnAsnSerArgLysIleTyr 214542 : TGGATATTACATAATAACGGTATGCAGAggacataaaaataattcacgcaaaatatat : 214598 292 : LeuLysMetAspPheValGlnIlePheArgAsnGlyValArgThrIle : 307 ... :::|||||||||:!!||||||||| GlnThrSerSerAsnPhe***TyrTyrArgAsnGlyIleArgThrIle 214599 : caaacatcgtcaaatttttaatattataggAATGGAATTCGAACAATT : 214648 vulgar: gi|805766344|ref|XP_012135233.1| 12 307 . KQ414889.1 212854 214648 + 671 M 232 696 S 0 2 5 0 2 I 0 905 3 0 2 S 1 1 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212855 214648 671 + . gene_id 3 ; sequence gi|805766344|ref|XP_012135233.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212855 213552 . + . KQ414889.1 exonerate:protein2genome:local exon 212855 213552 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 213553 213554 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local intron 213553 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214648 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212855 214648 671 + . alignment_id 3 ; Query gi|805766344|ref|XP_012135233.1| ; Align 212855 13 696 ; Align 214463 246 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766344|ref|XP_012135233.1| PREDICTED: uncharacterized protein LOC105661823 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 669 Query range: 10 -> 283 Target range: 226906 -> 228190 11 : AspGluHisGluArgAsnValAsnLeuSerIleLysTrpCysArgArgIleLeuThrI : 30 :!!!!::!!:!!..! !!:!!||||||||||||:!!! ! !||| !!:!:|||! ! AsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysP 226907 : AACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAAC : 226964 31 : leIleAlaValTrpProGlnSerProAspPheThrLeuLeuGlnLysCysPheTyrAr : 49 !:!!!.!:!!||||||..!|||! ! ! !:!!! !:!! !!:!||||||! ! ! roLeuGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTr 226965 : CACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTG : 227021 50 : gPheArgAsnValMetIlePheSerPheLeuSerPheLeuCysValProCysThrIle : 68 !!!.! !..! !!:!: !!:!:!!.!.:!!|||||| !! ||| !! !! !:!: pLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeu 227022 : GTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTG : 227078 69 : TyrMetIleValGluValGluAspValTyrAsnLysIleLysValPheGlyProThrS : 88 |||:!!:!!:!!||||||:!!! !!.!||||||! !:!:|||:!!.!!||||||! !| TyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetS 227079 : TACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGT : 227138 89 : erPheCysValMetAlaValIleLysTyrTyrLeuLeuIleLeuHisGluSerAspIl : 107 |||||! !!.!|||:!!:!!:!!||||||! !:!!|||! !!!||||||..!||||| erPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIl 227139 : CCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACAT : 227195 108 : eArgArgCysIleArgLeuIleGluLeuSerTrpLysGluIleThrHisProAspAsp : 126 |! !..!|||:!!..!! !|||:!!! !..!||||||.!.|||! !:!!! !!!:||| eLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAsp 227196 : TCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGAC : 227252 127 : ArgGluIleMetIleLysAsnAlaArgTyrGlyArgGlnLeuIleAlaLeuCysThrL : 146 |||.!.:!:|||:!:! ! !!||| !|||||||||:!!||||||.!!:!!||||||! ArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrP 227253 : AGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGT : 227312 147 : euIleMetTyrSerGlyLeuThrPheTyrTyrValSerIleProIleGlySerGlyAr : 165 !!.!!:!:!:!|||.........|||:::|||:!! !:!!||||||..!:!!|||!! hePheValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySe 227313 : TTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAG : 227369 166 : gIleGluAspProGluGluAsnValThrPheIleProLeuMetPheProPheProLys : 184 !:!!! ! !!!:! !||| !!:!!:!|||! !:!! !||||||||||||||| rValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLys 227370 : TGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAA : 227426 185 : LeuIleValAspThrArgPheSerProThrAsnGluIleIlePheSerPheGlnMetM : 204 :!!|||!.!|||..!|||!:!|||||| !|||||||||.!!|||||| ! |||.!.: IleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheV 227427 : ATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTG : 227486 205 : etSerAspAlaThrLeuHisGlyValSerSerAlaSerCysSerLeuAlaAlaMetLe : 223 !:!!!! ! !..!||||||||||||!!!||||||:!!||||||:!!||||||:!!|| alThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLe 227487 : TAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCT : 227543 224 : uAlaValHisIleCysGlyGlnMetGluValMetValAsnTrpLeuLysHisLeuVal : 242 |||||||||| !||||||||||||||||||:!!|||::!|||||| !||||||:!! uAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIle 227544 : TGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATC : 227600 243 : AspGly{Ar} >>>> Target Intron 1 >>>> {g}PheLeuGluLeuThrG : 251 ||||||{!!} 465 bp {!}||||||! |||! !| AspGly{Se}-- ++{r}PheLeuAlaLeuIleG 227601 : GACGGC{AG}ag.........................ag{C}TTTCTGGCCCTCATAG : 228092 252 : luLysThrLeuArgTyrIleSerLeuValGluPheLeuGlyCysThrLeuAsnLeuCy : 270 ||||||||:!!!:! ! |||:!!!!!|||||||||||||||||||||:!!! !||||| luLysThrMetGlnGlnIleAlaPheValGluPheLeuGlyCysThrIleIleLeuCy 228093 : AGAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGTACAATAATTCTGTG : 228149 271 : sLeuLeuSerTyrTyrValLeuMetValArgThrAsnGlu : 283 ||||:!!..!||||||:!!:!!! !||||||||||||::: sLeuIleGluTyrTyrIleIleThrValArgThrAsnLys 228150 : CCTCATCGAGTATTACATCATAACGGTACGcacgaataaa : 228190 vulgar: gi|805766344|ref|XP_012135233.1| 10 283 . KQ414889.1 226906 228190 + 669 M 234 702 S 0 2 5 0 2 I 0 461 3 0 2 S 1 1 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226907 228190 669 + . gene_id 4 ; sequence gi|805766344|ref|XP_012135233.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226907 227610 . + . KQ414889.1 exonerate:protein2genome:local exon 226907 227610 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 227611 227612 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local intron 227611 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228190 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228190 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226907 228190 669 + . alignment_id 4 ; Query gi|805766344|ref|XP_012135233.1| ; Align 226907 11 702 ; Align 228077 246 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766344|ref|XP_012135233.1| PREDICTED: uncharacterized protein LOC105661823 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 589 Query range: 11 -> 279 Target range: 208191 -> 210600 12 : GluHisGluArgAsnValAsnLeuSerIleLysTrpCysArgArgIleLeuThrIleI : 31 .!.:!!:!!!.!:!!:!!!:!!!!!:!:!!::: ! ! ! !!! |||! !|||| AsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuLysIleI 208192 : AACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGAAGATAA : 208249 32 : leAlaValTrpProGlnSerProAspPheThrLeuLeuGlnLysCysPheTyrArgPh : 50 ||!.! !||||||::!||| !||| !:!!! !|||:!!!!. !! :!!! !.! leGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHisIleLe 208250 : TCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCATATTCT : 208306 51 : eArgAsnValMetIlePheSerPheLeuSerPheLeuCysValProCysThrIleTyr : 69 ! !||||||:!:! ! !!!!!!.|||.!!|||:!! :!!||| ! !!!:!:! uLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGlyMetPhe 208307 : CTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATGTTC : 208363 70 : MetIleValGluValGluAspValTyrAsnLysIleLysValPheGlyProThrSerP : 89 !|||:!!! !||||||||| !!|||:!!:!!:!!|||:!!! !.!! !! !|||| AlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaLeuSerP 208364 : GCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTCTGAGCT : 208423 90 : heCysValMetAlaValIleLysTyrTyrLeuLeuIleLeuHisGluSerAspIleAr : 108 ||! !:!!|||||| !!! |||||| :!!:!!! !:!!!.!|||.!!|||||||| hePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAspIleAr 208424 : TCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGACATACG : 208480 109 : gArgCysIleArgLeuIleGluLeuSerTrpLysGluIleThrHisProAspAspArg : 127 |!:!|||:!!..!! !:!!||| !..!|||!:!.!.:!: !||| !!!:|||||| gLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGluAspArg 208481 : GAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAGGACAGG : 208537 128 : GluIleMetIleLysAsnAlaArgTyrGlyArgGlnLeuIleAlaLeuCysThrLeuI : 147 :!!||||||:!: ! ||||||!!!!:!!.!|||:!!||||||!.!:!!||| ! !. LysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysGlyAlaP 208538 : AAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCGGAGCTT : 208597 148 : leMetTyrSerGlyLeuThrPheTyrTyrValSerIleProIleGlySerGlyArgIl : 166 !!||||||.!!|||::: |||||||||:!!:!!:!:|||:!! ! !!! !!:!:! heMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAspLysVa 208598 : TCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGACAAGGT : 208654 167 : eGluAspProGluGluAsnValThrPheIleProLeuMetPheProPheProLysLeu : 185 !! !!: !! ! |||:!!|||!:!! ! !|||:!:!:!||| !!||||||!!! lValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValProLysPhe 208655 : CGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCTAAGTTC : 208711 186 : IleValAspThrArgPheSerProThrAsnGluIleIlePheSerPheGlnMetMetS : 205 |||:!!|||..!|||!:!||||||..!|||||||||.!!!:!!!! ! |||:!!:!!| IleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnLeuLeuS 208712 : ATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAATTGTTGT : 208771 206 : erAspAlaThrLeuHisGlyValSerSerAlaSerCysSerLeuAlaAlaMetLeuAl : 224 ||! ! !..! !|||..!:!!!!! !!.!:!!|||.!!|||||||||:!!||||| erGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLeuLeuAl 208772 : CGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCTGCTCGC : 208828 225 : aValHisIleCysGlyGlnMetGluValMetValAsnTrpLeuLysHisLeuValAsp : 243 |:!!||| |||||||||:!!:!!:!!:!!:!!::!|||:!!:!! ! ||||||||| aMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeuValAsp 208829 : GATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTGGTCGAT : 208885 244 : Gly{Ar} >>>> Target Intron 1 >>>> {g}PheLeuGluLeuThrGluL : 252 |||{||} 1605 bp {|}|||:!!! |||||||||! Gly{Ar}+- ++{g}PheIleAlaLeuThrGluA 208886 : GGA{CG}gg.........................ag{T}TTTATAGCTCTGACAGAGA : 210517 253 : ysThrLeuArgTyrIleSerLeuValGluPheLeuGlyCysThrLeuAsnLeuCysLe : 271 !. !|||!.! ! |||||||||:!!|||.!.:!!|||||||||||||||:!!|||!! snLeuLeuHisGluIleSerLeuIleGluMetValGlyCysThrLeuAsnMetCysPh 210518 : ACCTCCTGCACGAGATATCATTGATAGAAATGGTGGGGTGCACTCTGAACATGTGTTT : 210574 272 : uLeuSerTyrTyrValLeuMetVal : 279 !|||.!!||||||..!:!!!!:||| eLeuGlyTyrTyrThrMetIleVal 210575 : CCTTGGCTATTACACGATGATTGTA : 210600 vulgar: gi|805766344|ref|XP_012135233.1| 11 279 . KQ414889.1 208191 210600 + 589 M 233 699 S 0 2 5 0 2 I 0 1601 3 0 2 S 1 1 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208192 210600 589 + . gene_id 5 ; sequence gi|805766344|ref|XP_012135233.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208192 208892 . + . KQ414889.1 exonerate:protein2genome:local exon 208192 208892 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208893 208894 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local intron 208893 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210600 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210600 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208192 210600 589 + . alignment_id 5 ; Query gi|805766344|ref|XP_012135233.1| ; Align 208192 12 699 ; Align 210499 246 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766344|ref|XP_012135233.1| PREDICTED: uncharacterized protein LOC105661823 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 378 Query range: 14 -> 287 Target range: 232447 -> 234650 15 : ArgAsnValAsnLeuSerIleLysTrpCysArgArgIleLeuThrIleIleAlaValT : 34 |||:!! !.!.! !||||||:!! ! !||| !!.!!|||||| !!:!.!!.!| ArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaT 232448 : CGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCAT : 232505 35 : rpProGlnSerProAspPheThrLeuLeuGlnLysCysPheTyrArgPheArgAsnVa : 53 |||||!:: ! !!!!: !:!! ! !|||:!! .!! !:!.!. !!..:! rpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLe 232506 : GGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACT : 232562 54 : lMetIlePheSerPheLeuSerPheLeuCysValProCysThrIleTyrMetIleVal : 72 !! ! !|||.!.:!!! !! !! ! !|||||||||! !:!:!:!!!::!: !! uThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPhe 232563 : CACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTC : 232619 73 : GluValGluAspValTyrAsnLysIleLysValPheGlyProThrSerPheCysValM : 92 |||! ! !..!:!! ! .!.!:!!!:||| !.!!||||||! !||| !! !:!!| GluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuM 232620 : GAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGA : 232679 93 : etAlaValIleLysTyrTyrLeuLeuIleLeuHisGluSerAspIleArgArgCysIl : 111 ||!.!! !:!:!!.|||! !! !|||:!: ! ! ! !!:!||||||! ! !|||:! etGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysVa 232680 : TGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGT : 232736 112 : eArgLeuIleGluLeuSerTrpLysGluIleThrHisProAspAspArgGluIleMet : 130 :..!! !:!::!!! !..!|||::!.!.:!!! ! ! |||! ! !!|||!!::!:||| lGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMet 232737 : GGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATG : 232793 131 : IleLysAsnAlaArgTyrGlyArgGlnLeuIleAlaLeuCysThrLeuIleMetTyrS : 150 :!:|||||||||!:! !||||||..!:!! !..!:!!..!.!!!!! !|||:!!! LeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisT 232794 : TTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACA : 232853 151 : erGlyLeuThrPheTyrTyrValSerIleProIleGlySerGlyArgIleGluAspPr : 169 !!|||:!! !! ! !! ! :!! !! ! !:!! !!! !.!!! !.!! ! ! hrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGl 232854 : CCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGG : 232910 170 : oGluGluAsnValThrPheIleProLeuMetPheProPheProLysLeuIleValAsp : 188 !.!.|||!:! !:!!.!. !|||||| ! ! !!||| !! ! !:!::!!||| yAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAsp 232911 : GAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGAC : 232967 189 : ThrArgPheSerProThrAsnGluIleIlePheSerPheGlnMetMetSerAspAlaT : 208 |||||||||||||||||||||||||||!!:||| !.!.||| :!:|||! !! ThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheI 232968 : ACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCA : 233027 209 : hrLeuHisGlyValSerSerAlaSerCysSerLeuAlaAlaMetLeuAlaValHisIl : 227 !:!!:!!..!|||!!! !!.!:!!|||.!!|||!.!|||:!:||||||:!!||| leValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAl 233028 : TCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGC : 233084 228 : eCysGlyGlnMetGluValMetValAsnTrpLeuLysHisLeuValAspGlyArgPhe : 246 |||||||||:!!.!.|||:!!:!!::: ||| ! !!|||||||||!.!!:! aCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGly 233085 : GTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGG : 233141 247 : LeuGluLeuThr{G} >>>> Target Intron 1 >>>> {lu}LysThrLeuA : 255 ! !||| !! !{|} 1384 bp {||}!!...!:!!! GlnGluGluArg{G}-- ++{lu}AsnValMetA 233142 : CAGGAGGAGAGA{G}tc.........................ag{AG}AACGTTATGA : 234552 256 : rgTyrIleSerLeuValGluPheLeuGlyCysThrLeuAsnLeuCysLeuLeuSerTy : 274 .! |||!!!|||||||||!!.:!!|||||||||||||||:!!|||:!!|||..!|| snLeuIleCysLeuValGluLeuValGlyCysThrLeuAsnMetCysMetLeuGluTy 234553 : ACCTAATATGCCTGGTTGAGTTGGTAGGATGCACGTTGAACATGTGCATGCTCGAGTA : 234609 275 : rTyrValLeuMetValArgThrAsnGluAlaValAsnArg : 287 ||||:!!|||! !|||||| !...... ::: ||| rTyrLeuLeuThrValArgPheThrAsnLysIleLeuArg 234610 : TTATTTACTCACGGTACGTTTTactaataaaattcttcga : 234650 vulgar: gi|805766344|ref|XP_012135233.1| 14 287 . KQ414889.1 232447 234650 + 378 M 236 708 S 0 1 5 0 2 I 0 1380 3 0 2 S 1 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232448 234650 378 + . gene_id 6 ; sequence gi|805766344|ref|XP_012135233.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232448 233156 . + . KQ414889.1 exonerate:protein2genome:local exon 232448 233156 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 233157 233158 . + . intron_id 1 ; splice_site "TC" KQ414889.1 exonerate:protein2genome:local intron 233157 234540 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234539 234540 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234541 234650 . + . KQ414889.1 exonerate:protein2genome:local exon 234541 234650 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232448 234650 378 + . alignment_id 6 ; Query gi|805766344|ref|XP_012135233.1| ; Align 232448 15 708 ; Align 234543 252 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766344|ref|XP_012135233.1| PREDICTED: uncharacterized protein LOC105661823 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 372 Query range: 19 -> 285 Target range: 284526 -> 286819 20 : SerIleLysTrpCysArgArgIleLeuThrIleIleAlaValTrpProGlnSerProA : 39 |||:!!:!! ! !||| !!.!!|||! ! |||!.!|||||||||! |||! ! SerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuC 284527 : AGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCT : 284584 40 : spPheThrLeuLeuGlnLysCysPheTyrArgPheArgAsnValMetIlePheSerPh : 58 ! ! ||| !|||:!!||| ! !! ! ! !!! ! :!!!!:! !! !! !.! ysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLe 284585 : GCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCT : 284641 59 : eLeuSerPheLeuCysValProCysThrIleTyrMetIleValGlu<->ValGluAsp : 76 .:!!.!!||||||! |||||||||.!!:!:! !! :!::!!!!: ..!! ||| uIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAsp 284642 : GATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGAT : 284698 77 : ValTyrAsnLysIleLysValPheGlyProThrSerPheCysValMetAlaValIleL : 96 :!! !!!..|||||||||:!!.!!|||||| !|||||||||:!!||||||!.!|||| LeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleL 284699 : CTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCA : 284758 97 : ysTyrTyrLeuLeuIleLeuHisGluSerAspIleArgArgCysIleArgLeuIleGl : 115 ||||||||:!!||||||! !!.!! .!! ! ||| !!!:!|||:!:!:! !|||.. ysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIleAr 284759 : AGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCG : 284815 116 : uLeuSerTrpLys<->GluIleThrHis<-><->ProAspAspArgGluIleMetIle : 131 . !..!|||... !:!!:!!||| ::::::||||||||||||! gAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMetArg 284816 : TGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTGAGG : 284872 132 : LysAsnAlaArgTyrGlyArgGlnLeuIleAlaLeuCysThrLeuIleMetTyrSerG : 151 ! !:!|||||| !||||||...||| !!!!|||.!! !.!!|||||||||| AspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerG 284873 : GACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCG : 284932 152 : lyLeuThrPheTyrTyrValSerIleProIleGlySerGlyArgIleGluAspProGl : 170 || ! !|||||| !..! !!!:|||:!: !!!!!! !|||! ||| ! lyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGlu---IleIl 284933 : GAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAG---ATCAT : 284986 171 : uGluAsnValThrPheIleProLeuMetPheProPheProLysLeuIleValAspThr : 189 !!:|||! !||| ! ! ! !!! ! !||||||.!! !::: !:!!:!!||| !! eAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 284987 : CGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCG : 285043 190 : ArgPheSerProThrAsnGluIleIlePheSerPheGlnMetMetSerAspAlaThrL : 209 ||| !||||||:!! !||||||:!: ! !.!.||| :!!:!!! !..!: ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValI 285044 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTA : 285103 210 : euHisGlyValSerSerAlaSerCysSerLeuAlaAlaMetLeuAlaValHisIleCy : 228 !!:!!..!|||!!! !!.!:!!|||||||||||||||:!!!!!!.!:!!|||:!!|| leTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCy 285104 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTG : 285160 229 : sGlyGlnMetGluValMetValAsnTrpLeuLysHisLeuValAspGly{Ar} >>> : 245 |||||||.!...!:!!:!:|||!.. !||| ! ! ||||||||||||{ } sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGly{Va}+- 285161 : TGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGA{GT}ga... : 285215 246 : > Target Intron 1 >>>> {g}PheLeuGluLeuThrGluLysThrLeuArgT : 256 1486 bp {!}|||:!!..!! !! !||| ! !|||!.! ++{l}PheIleSerGlnIleGluGlyLeuLeuAsnG 285216 : ......................ag{T}TTTATATCGCAAATCGAGGGGCTCCTAAACG : 286730 257 : yrIleSerLeuValGluPheLeuGlyCysThrLeuAsnLeuCysLeuLeuSerTyrTy : 275 ! |||!!!!!!|||||| ! :!!|||||||||||||||:!!|||!!!|||.!!||||| luIleCysPheValGluValIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrTy 286731 : AAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGGGATATTA : 286787 276 : rValLeuMetValArgThrAsnGluAlaVal : 285 |:!!|||! !|||! ! !!.. ..!||| rLeuLeuThrValThrGluThrThrCysVal 286788 : TTTACTGACGGTAACAGAGACGACTTGTGTT : 286819 vulgar: gi|805766344|ref|XP_012135233.1| 19 285 . KQ414889.1 284526 286819 + 372 M 54 162 G 0 3 M 46 138 G 0 3 M 4 12 G 0 6 M 44 132 G 1 0 M 76 228 S 0 2 5 0 2 I 0 1482 3 0 2 S 1 1 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284527 286819 372 + . gene_id 7 ; sequence gi|805766344|ref|XP_012135233.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284527 285212 . + . KQ414889.1 exonerate:protein2genome:local exon 284527 285212 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 285213 285214 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 285213 286698 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286819 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286819 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284527 286819 372 + . alignment_id 7 ; Query gi|805766344|ref|XP_012135233.1| ; Align 284527 20 162 ; Align 284692 74 138 ; Align 284833 120 12 ; Align 284851 124 132 ; Align 284983 169 228 ; Align 286700 246 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766344|ref|XP_012135233.1| PREDICTED: uncharacterized protein LOC105661823 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 359 Query range: 17 -> 279 Target range: 266634 -> 267561 18 : AsnLeuSerIleLysTrpCysArgArgIleLeuThrIleIleAlaValTrpProGlnS : 37 :!!! !|||:!::!!! ! !||| !!.!!|||! ! !|||!.!!.!||||||! !! AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProL 266635 : GATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGT : 266692 38 : erProAspPheThrLeuLeuGlnLysCysPheTyrArgPheArgAsnValMetIlePh : 56 ! !! ! :!! !|||:!!::! ! !!! ! ! ! !! !|||!!: !!: euSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266693 : TGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 57 : eSerPheLeuSerPheLeuCysValProCysThrIleTyrMetIleValGluValGlu : 75 !!!!! !:!! !||| ! :!!|||||| !.!!:!!:!::!!:!!|||! !||| rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 76 : AspValTyrAsnLysIleLysValPheGlyProThrSerPheCysValMetAlaValI : 95 ..!:!! !!..|||:!:||||||||||||||| !||| !!! !!:!:!.!! !| SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 96 : leLysTyrTyrLeuLeuIleLeuHisGluSerAspIleArgArgCysIleArgLeuIl : 114 ||!!.||| ! !|||:!:|||!.!...!.!!!:|||||| !!|||:!!..!! !!! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 115 : eGluLeuSerTrpLysGluIleThrHisProAspAspArgGluIleMetIleLysAsn : 133 ::!! !..!|||!:! :!:|||...|||!!:|||!:!:!!:!:|||:!:|||||| tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 134 : AlaArgTyrGlyArgGlnLeuIleAlaLeuCysThrLeuIleMetTyrSerGlyLeuT : 153 |||||| !|||||| ! :!! ! !!!!|||.!! !.!!||| ! !!!|||:!! AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 154 : hrPheTyrTyrValSerIleProIleGlySerGlyArgIleGluAspProGluGluAs : 172 ! !|||! !|||! !! !!.!! !! ! !! !:!:|||! ! !.!.|||!. euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 173 : nValThrPheIleProLeuMetPheProPheProLysLeuIleValAspThrArgPhe : 191 ! !! ! ! !! !||| ! ! !! !! !||| !!!::!!! ..! ! ! rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 192 : SerProThrAsnGluIleIlePheSerPheGlnMetMetSerAspAlaThrLeuHisG : 211 ||||||||||||||||||:!!.!! !! |||.!.:!:|||! !! !:!!:!!. SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 212 : lyValSerSerAlaSerCysSerLeuAlaAlaMetLeuAlaValHisIleCysGlyGl : 230 .! ! ! !!.!:!!! !||||||||||||:!!!!!|||!.!||| |||||||| erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 231 : nMetGluValMetValAsnTrpLeuLysHisLeu >>>> Target Intron 1 > : 242 |:!!...|||:!!:!!! |||:!!|||.!.!!! 141 bp nLeuSerValLeuMetMetTrpIleLysGluPhe++ 267272 : GCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTgt...................... : 267309 243 : >>> ValAspGlyArgPheLeuGluLeuThrGluLysThrLeuArgTyrIleSerLe : 259 |||||| !!!!!|||:!!! !! !! !|||!....!:!!!!! ! |||!!!!! +-ValAspCysSerPheIleAlaArgIleGluSerValMetSerGluIleCysPh 267310 : ...atGTTGATTGCAGCTTCATAGCACGTATCGAAAGTGTAATGAGCGAAATTTGCTT : 267499 260 : uValGluPheLeuGlyCysThrLeuAsnLeuCysLeuLeuSerTyrTyrValLeuMet : 278 !:!!|||!!.!!! !||||||:!!:!!:!!|||:!!||||||||||||:!!|||! ! eMetGluLeuPheLysCysThrMetAspIleCysValLeuSerTyrTyrIleLeuThr 267500 : CATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCTATTATATCCTTACG : 267556 279 : Val : 279 ||| Val 267557 : Gta : 267561 vulgar: gi|805766344|ref|XP_012135233.1| 17 279 . KQ414889.1 266634 267561 + 359 M 224 672 5 0 2 I 0 137 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266635 267561 359 + . gene_id 8 ; sequence gi|805766344|ref|XP_012135233.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266635 267306 . + . KQ414889.1 exonerate:protein2genome:local exon 266635 267306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267307 267308 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267307 267447 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267446 267447 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 267448 267561 . + . KQ414889.1 exonerate:protein2genome:local exon 267448 267561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266635 267561 359 + . alignment_id 8 ; Query gi|805766344|ref|XP_012135233.1| ; Align 266635 18 672 ; Align 267448 242 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766344|ref|XP_012135233.1| PREDICTED: uncharacterized protein LOC105661823 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 325 Query range: 17 -> 243 Target range: 256649 -> 257327 18 : AsnLeuSerIleLysTrpCysArgArgIleLeuThrIleIleAlaValTrpProGlnS : 37 :!!! !|||:!!:!!! ! !||| !!.!!|||! ! !|||!.!!.!||||||! | AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS 256650 : GATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCT : 256707 38 : erProAspPheThrLeuLeuGlnLysCysPheTyrArgPheArgAsnValMetIlePh : 56 || !!..! !||| !|||:!!::! ! !!! ! ! !! !|||:!!:!: !!: erSerSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTy 256708 : CGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTA : 256764 57 : eSerPheLeuSerPheLeuCysValProCysThrIleTyrMetIleValGluValGlu : 75 !.!!! !:!!! !||| !! :!!|||||| !:!!:!!:!:.!!:!!!!:! !!!: rGlySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAsp 256765 : TGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGAC : 256821 76 : AspValTyrAsnLysIleLysValPheGlyProThrSerPheCysValMetAlaValI : 95 ..! !!||| |||:::||| |||||||||! !||| !!! :!!!!:::! ! SerPheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysA 256822 : AGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTG : 256881 96 : leLysTyrTyrLeuLeuIleLeuHisGluSerAspIleArgArgCysIleArgLeuIl : 114 !!!.||| ||||||:!:|||!!.! !!.!||||||||| !|||:!!..!! !|| laAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIl 256882 : CCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATAT : 256938 115 : eGluLeuSerTrpLysGluIleThrHisProAspAspArgGluIleMetIleLysAsn : 133 |||| !..!|||!:! !:!:! !... ! ! |||!:!:!!:!:|||!!:|||||| eGluThrAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsn 256939 : AGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAAC : 256995 134 : AlaArgTyrGlyArgGlnLeuIleAlaLeuCysThrLeuIleMetTyrSerGlyLeuT : 153 ||||||!:!|||||| ! :!! !.!!!!!|||.!! !|||||| ! ||||||::: AlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValP 256996 : GCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttt : 257055 154 : hrPheTyrTyrValSerIleProIleGlySerGlyArgIleGluAspProGluGluAs : 172 ::::::|||||| !!:!:..!!!!! !! !|||.!.! !.!.|||!. heCysPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluTh 257056 : tctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAAC : 257112 173 : nValThrPheIleProLeuMetPheProPheProLysLeuIleValAspThrArgPhe : 191 ...!! ! ! ! !||| !! !! ! !||| !:!::!!:!!..! ! rThrIleValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGln 257113 : AACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAG : 257169 192 : SerProThrAsnGluIleIlePheSerPheGlnMetMetSerAspAlaThrLeuHisG : 211 ||||||||||||||||||:!: !!! !.!.|||! !|||... !! ! ! ! SerProThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrT 257170 : AGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTA : 257229 212 : lyValSerSerAlaSerCysSerLeuAlaAlaMetLeuAlaValHisIleCysGlyGl : 230 ! !!!! !::!! !! !||||||||||||:!:!!!|||..!||| ! !||||| hrSerThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGl 257230 : CTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCA : 257286 231 : nMetGluValMetValAsnTrpLeuLysHisLeuValAsp : 243 |:!! |||:!::!!:::|||:!!! !.!.!!!|||:!! nLeuThrValLeuMetSerTrpIleThrGluPheValAsn 257287 : GTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAAT : 257327 vulgar: gi|805766344|ref|XP_012135233.1| 17 243 . KQ414889.1 256649 257327 + 325 M 226 678 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256650 257327 325 + . gene_id 9 ; sequence gi|805766344|ref|XP_012135233.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256650 257327 . + . KQ414889.1 exonerate:protein2genome:local exon 256650 257327 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256650 257327 325 + . alignment_id 9 ; Query gi|805766344|ref|XP_012135233.1| ; Align 256650 18 678 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766344|ref|XP_012135233.1| PREDICTED: uncharacterized protein LOC105661823 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 305 Query range: 17 -> 285 Target range: 259769 -> 260902 18 : AsnLeuSerIleLysTrpCysArgArgIleLeuThrIleIleAlaValTrpProGlnS : 37 :!!! !|||:!!:!!!:: !||| !!.!!|||! ! |||!.!!.!||||||! | AspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS 259770 : GACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTT : 259827 38 : erProAspPheThrLeuLeuGlnLysCysPheTyrArgPheArgAsnValMetIlePh : 56 || !!..! ||| !|||:!!||| !.!!! ! !.!!! !! ! !!!!: !!: erSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTy 259828 : CATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTA : 259884 57 : eSerPheLeuSerPheLeuCysValProCysThrIleTyrMetIleValGluValGlu : 75 !||| !:!! ! !! ! :!!||||||..!:!!:!!|||:!!:!!||| !||| rSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGlu 259885 : CAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAG : 259941 76 : AspValTyrAsnLysIleLysValPheGlyProThrSerPheCysValMetAlaValI : 95 ..!:!!|||! |||! ||||||.!!|||||| !!!! !!! !!:!:!.! !| SerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysI 259942 : AGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTA : 260001 96 : leLysTyrTyrLeuLeuIleLeuHisGluSerAspIleArgArgCysIleArgLeuIl : 114 ||!!.||| !|||:!:|||...! !!!||||||! !!!!|||:!:..!! !:! leAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisVa 260002 : TTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGT : 260058 115 : eGluLeuSerTrpLysGluIleThrHisProAspAspArgGluIleMetIleLysAsn : 133 :||| !..!|||!:! ||||||... ! ! |||!:!.!.:!:|||:!:!:! !! lGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyr 260059 : GGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATAC : 260115 134 : AlaArgTyrGlyArgGlnLeuIleAlaLeuCysThrLeuIleMetTyrSerGlyLeuT : 153 |||!:!!:!|||||| ! :!! !|||! !|||.!! !.!!:!! ! .!!|||:!! AlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValL 260116 : GCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTC : 260175 154 : hrPheTyrTyrValSerIleProIleGlySerGlyArgIleGluAspProGluGluAs : 172 !! !!:!! !:!! !! !:!:.!!!!!! ! !|||:!!! !.!.|||!. euCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluTh 260176 : TGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGAC : 260232 173 : nValThrPheIleProLeuMetPheProPheProLysLeuIleValAspThrArgPhe : 191 . !! ! !! !! !||| !! ! !! ! !||| !:!::!!:!!..!!.! ! rArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAsp 260233 : GAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGAC : 260289 192 : SerProThrAsnGluIleIlePheSerPheGlnMetMetSerAspAlaThrLeuHisG : 211 ||||||! !|||||||||:!!.!! ! ! |||.!.:!:|||! !! !:!!:!!. SerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnS 260290 : AGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATT : 260349 212 : lyValSerSerAlaSerCysSerLeuAlaAlaMetLeuAlaValHisIleCysGlyGl : 230 .! !!!! !!.!! !! !||||||||||||:!:|||.!!!.!||| |||||||| erSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGl 260350 : CGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCA : 260406 231 : nMetGluValMetValAsnTrpLeuLysHisLeuValAspGlyArgPheLeuGluLeu : 249 |:!!.!.|||:!::!!.!.|||:!!! !.!.!!!||||||! ! ! !..! ! nLeuAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLys 260407 : GTTGAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAG : 260463 250 : ThrGluLysThrLeuArgTyrIleSerLeuValGluPheLeuGlyCysThrLeuAsn{ : 269 ! !:!! !!!!!!:! ! |||.!!:!!:!!! ! ! !! ! ! ! !{ LysLysAlaProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeu{ 260464 : AAAAAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC{ : 260523 270 : Le} >>>> Target Intron 1 >>>> {u}CysLeuLeuSerTyrTyrValLe : 277 } 329 bp {!}|||||||||.!!||||||:!!|| Th}++ +-{r}CysLeuLeuGlyTyrTyrIleLe 260524 : AC}gt.........................at{A}TGTCTACTTGGCTACTATATTCT : 260876 278 : uMetValArgThrAsnGluAlaVal : 285 ||||||||||..!!!. |||||| uMetValArgValLysIleAlaVal 260877 : TATGGTGCGTGTTAAAATTGCTGTT : 260902 vulgar: gi|805766344|ref|XP_012135233.1| 17 285 . KQ414889.1 259769 260902 + 305 M 251 753 S 0 2 5 0 2 I 0 325 3 0 2 S 1 1 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259770 260902 305 + . gene_id 10 ; sequence gi|805766344|ref|XP_012135233.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259770 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259770 260524 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260853 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260852 260853 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 260854 260902 . + . KQ414889.1 exonerate:protein2genome:local exon 260854 260902 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259770 260902 305 + . alignment_id 10 ; Query gi|805766344|ref|XP_012135233.1| ; Align 259770 18 753 ; Align 260855 270 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766344|ref|XP_012135233.1| PREDICTED: uncharacterized protein LOC105661823 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 298 Query range: 17 -> 243 Target range: 262846 -> 263524 18 : AsnLeuSerIleLysTrpCysArgArgIleLeuThrIleIleAlaValTrpProGlnS : 37 :!!! !|||:!::!! !||| !!:!:|||! ! |||!.!!.!||||||! !| AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 38 : erProAspPheThrLeuLeuGlnLysCysPheTyrArgPheArgAsnValMetIlePh : 56 || !!....!!:!! !:!!:!!::! !.!!!:: !.!! !! !|||:!: !!: erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 57 : eSerPheLeuSerPheLeuCysValProCysThrIleTyrMetIleValGluValGlu : 75 !!!!.!!:!! !! ! ! !:!!|||! !! !:!!:!!!!::!!:!!|||!.!||| rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 76 : AspValTyrAsnLysIleLysValPheGlyProThrSerPheCysValMetAlaValI : 95 :!! !!:!!! |||:!::!!|||.!!|||||| !.!! !! !!:!:!.!:!!| AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 96 : leLysTyrTyrLeuLeuIleLeuHisGluSerAspIleArgArgCysIleArgLeuIl : 114 ||!!.||| !! !|||:!:||||||...!.!||||||!:! !!|||:!:!:!! !:! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 115 : eGluLeuSerTrpLysGluIleThrHisProAspAspArgGluIleMetIleLysAsn : 133 ::!! !..!||| :!:|||... !!!:|||!:!...||||||:!:|||||| lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 134 : AlaArgTyrGlyArgGlnLeuIleAlaLeuCysThrLeuIleMetTyrSerGlyLeuT : 153 |||!:!||||||||| ! :!! !|||! !|||.!!:!!.!!||| ! !!!.!!:!!! AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 154 : hrPheTyrTyrValSerIleProIleGlySerGlyArgIleGluAspProGluGluAs : 172 !! ! ! ! !:!! !! ! !!.!! !!!! ! !||||||||| !.!.|||!. etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 173 : nValThrPheIleProLeuMetPheProPheProLysLeuIleValAspThrArgPhe : 191 ! !! !.!. ! !||| !! !||| ! !||| !|||:!! ..! ! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 192 : SerProThrAsnGluIleIlePheSerPheGlnMetMetSerAspAlaThrLeuHisG : 211 !:!|||||||||||||||.!!.!!:!! |||.!.:!!|||! ! !! !:!! !! AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 212 : lyValSerSerAlaSerCysSerLeuAlaAlaMetLeuAlaValHisIleCysGlyGl : 230 .!..!!!! !!.!:!!! !.!!:!!.!!|||:!!!!!|||! !||| !|||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 231 : nMetGluValMetValAsnTrpLeuLysHisLeuValAsp : 243 |:!!.!.|||:!!:!!::!|||:!!! !.!.!!!|||:!! nLeuAsnValLeuMetSerTrpIleThrGluPheValAsn 263484 : GTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAAC : 263524 vulgar: gi|805766344|ref|XP_012135233.1| 17 243 . KQ414889.1 262846 263524 + 298 M 226 678 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 263524 298 + . gene_id 11 ; sequence gi|805766344|ref|XP_012135233.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262847 263524 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263524 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262847 263524 298 + . alignment_id 11 ; Query gi|805766344|ref|XP_012135233.1| ; Align 262847 18 678 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766344|ref|XP_012135233.1| PREDICTED: uncharacterized protein LOC105661823 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 298 Query range: 19 -> 244 Target range: 278579 -> 279263 20 : SerIleLysTrpCysArgArgIleLeuThrIleIleAlaValTrpProGlnSerProA : 39 |||:!!:!! ! !||| !!.!!|||! ! |||!.!|||||||||! |||! ! SerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuC 278580 : AGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCT : 278637 40 : spPheThrLeuLeuGlnLysCysPheTyrArgPheArgAsnValMetIlePheSerPh : 58 ! ! ||| !|||:!!||| ! !! ! ! !!! ! :!!!!:! !! !! !.! ysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLe 278638 : GCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCT : 278694 59 : eLeuSerPheLeuCysValProCysThrIleTyrMetIleValGlu<->ValGluAsp : 76 .:!!.!!||||||! |||||||||.!!:!:! !! :!::!!!!: ..!! ||| uIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAsp 278695 : GATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGAT : 278751 77 : ValTyrAsnLysIleLysValPheGlyProThrSerPheCysValMetAlaValIleL : 96 :!! !!!..|||||||||:!!.!!|||||| !|||||||||..!||||||..!|||| LeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrIleL 278752 : CTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCA : 278811 97 : ysTyrTyrLeuLeuIleLeuHisGluSerAspIleArgArgCysIleArgLeuIleGl : 115 ||||||||:!!|||!!:! !!.!! .!! ! ||| !!!:!|||:!:!.! !|||.. ysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIleAr 278812 : AATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCG : 278868 116 : uLeuSerTrpLys<-><-><->GluIleThrHisProAspAspArgGluIleMetIle : 131 . !..!|||... ..! ! ... ::::::||||||||||||! gThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMetArg 278869 : TACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTGAGG : 278925 132 : LysAsnAlaArgTyrGlyArgGlnLeuIleAlaLeuCysThrLeuIleMetTyrSerG : 151 ! !:!|||||| !||||||...||| !!!! !!.!! !.!!|||||||||| AspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerG 278926 : GACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCG : 278985 152 : lyLeuThrPheTyrTyrValSerIleProIleGlySerGlyArgIleGluAspProGl : 170 || !..!|||||| !!.! !!!:|||:!: !:!!! !|||! ||| ! lyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGlu---IleIl 278986 : GCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAG---ATCAT : 279039 171 : uGluAsnValThrPheIleProLeuMetPheProPheProLysLeuIleValAspThr : 189 !!:|||! !||| ! ! ! !!! ! !||||||.!! !::: !:!!:!!||| !! eAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 279040 : CGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCG : 279096 190 : ArgPheSerProThrAsnGluIleIlePheSerPheGlnMetMetSerAspAlaThrL : 209 ||| !||||||:!! !||||||:!: ! !.!.||| :!!:!!! !..!| ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValL 279097 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTT : 279156 210 : euHisGlyValSerSerAlaSerCysSerLeuAlaAlaMetLeuAlaValHisIleCy : 228 ||:!!..!|||!!! !!.!:!!||||||||| !|||:!!!!!!.!:!!|||:!!|| euTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCy 279157 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTG : 279213 229 : sGlyGlnMetGluValMetValAsnTrpLeuLysHisLeuValAspGly : 244 |||||||.!...!:!!:!:|||!.. !||| ! ! |||:!!|||||| sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGly 279214 : TGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGA : 279263 vulgar: gi|805766344|ref|XP_012135233.1| 19 244 . KQ414889.1 278579 279263 + 298 M 54 162 G 0 3 M 46 138 G 0 9 M 48 144 G 1 0 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278580 279263 298 + . gene_id 12 ; sequence gi|805766344|ref|XP_012135233.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278580 279263 . + . KQ414889.1 exonerate:protein2genome:local exon 278580 279263 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278580 279263 298 + . alignment_id 12 ; Query gi|805766344|ref|XP_012135233.1| ; Align 278580 20 162 ; Align 278745 74 138 ; Align 278892 120 144 ; Align 279036 169 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766344|ref|XP_012135233.1| PREDICTED: uncharacterized protein LOC105661823 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 279 Query range: 17 -> 243 Target range: 274380 -> 275058 18 : AsnLeuSerIleLysTrpCysArgArgIleLeuThrIleIleAlaValTrpProGlnS : 37 :!!! !|||:!::!!! ! !||| !!.!!|||! ! !|||!.!!.!|||||| !: AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuA 274381 : GACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAG : 274438 38 : erProAspPheThrLeuLeuGlnLysCysPheTyrArgPheArgAsnValMetIlePh : 56 !! !! ! !||| !!!!:!!::! !.!!! !.!... ::: :: laSerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTy 274439 : CCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctA : 274495 57 : eSerPheLeuSerPheLeuCysValProCysThrIleTyrMetIleValGluValGlu : 75 !!!!|||:!! !! ! ! !:!!||| !!! !.!!:!!!!:|||:!!! !! !||| rCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGlu 274496 : CTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAA : 274552 76 : AspValTyrAsnLysIleLysValPheGlyProThrSerPheCysValMetAlaValI : 95 ..!:!!:!! |||:!:|||:!!.!!|||||| !.!! !!! !!!!:!.!! !| SerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyI 274553 : AGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAA : 274612 96 : leLysTyrTyrLeuLeuIleLeuHisGluSerAspIleArgArgCysIleArgLeuIl : 114 ||!!.||| ! !|||:!:|||!.!...!.!!!:|||||| !!|||:!:..!! !!! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 274613 : TTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACAT : 274669 115 : eGluLeuSerTrpLysGluIleThrHisProAspAspArgGluIleMetIleLysAsn : 133 ::!! !..!|||!:! :!:|||...|||!!:|||!:!:!!:!:|||:!:|||||| tGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsn 274670 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAAC : 274726 134 : AlaArgTyrGlyArgGlnLeuIleAlaLeuCysThrLeuIleMetTyrSerGlyLeuT : 153 |||!:! !|||||| ! :!! !!!!|||.!! !.!!||| ! !!!|||:!! AlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 274727 : GCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTC : 274786 154 : hrPheTyrTyrValSerIleProIleGlySerGlyArgIleGluAspProGluGluAs : 172 !! !|||! !|||! !! ! !!.!! !! ! !! !:!!:!!! !.!.|||!. euCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluTh 274787 : TCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGAC : 274843 173 : nValThrPheIleProLeuMetPheProPheProLysLeuIleValAspThrArgPhe : 191 ! !||| ! ! !||| !! ! ! ! !||| !||||||! ..! ! rArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThr 274844 : CAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACG : 274900 192 : SerProThrAsnGluIleIlePheSerPheGlnMetMetSerAspAlaThrLeuHisG : 211 ||||||||||||||||||:!!.!!:!!! |||.!.:!!|||! !! !:!!:!!. SerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnS 274901 : AGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATT : 274960 212 : lyValSerSerAlaSerCysSerLeuAlaAlaMetLeuAlaValHisIleCysGlyGl : 230 .! !:!! !!.!:!!! !||||||||||||:!!!!!|||!.!||| !! !||||| erSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGl 274961 : CGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCA : 275017 231 : nMetGluValMetValAsnTrpLeuLysHisLeuValAsp : 243 |:!!...|||:!!:!!! |||:!!! .!.!!!|||:!! nLeuSerValLeuMetIleTrpIleThrGluPheValAsn 275018 : GTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAAT : 275058 vulgar: gi|805766344|ref|XP_012135233.1| 17 243 . KQ414889.1 274380 275058 + 279 M 226 678 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274381 275058 279 + . gene_id 13 ; sequence gi|805766344|ref|XP_012135233.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274381 275058 . + . KQ414889.1 exonerate:protein2genome:local exon 274381 275058 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274381 275058 279 + . alignment_id 13 ; Query gi|805766344|ref|XP_012135233.1| ; Align 274381 18 678 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766344|ref|XP_012135233.1| PREDICTED: uncharacterized protein LOC105661823 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 250 Query range: 10 -> 198 Target range: 294663 -> 295227 11 : AspGluHisGluArgAsnValAsnLeuSerIleLysTrpCysArgArgIleLeuThrI : 30 ||| :!!..!!.!:!!||| !|||:!!|||!::|||||||||:!:|||! ! AspThrAsnArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysP 294664 : GATACTAACAGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAAC : 294721 31 : leIleAlaValTrpProGlnSerProAspPheThr<->LeuLeuGlnLysCysPheTy : 48 |||!.!:!!||||||! ! ! !..! !||| !|||.!.||| !.!!! roIleGlyLeuTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSe 294722 : CGATCGGTCTTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTC : 294778 49 : rArgPheArgAsnValMetIlePheSerPheLeuSerPheLeuCysValProCysThr : 67 ! !.!!! !! !!.! ! ! ! ! !:!! !|||:!!! ||||||||| ! rIleIleLeuIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGly 294779 : GATAATTCTGATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGA : 294835 68 : IleTyrMetIleValGluValGluAspValTyrAsnLysIleLysValPheGlyProT : 87 !!:! :!! !!.!.|||::::::||| |||!!:|||:!!.!.||||||. TyrPheCysValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProV 294836 : TACTTCTGTGTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGG : 294895 88 : hrSerPheCysValMetAlaValIleLysTyrTyrLeuLeuIleLeuHisGluSerAs : 106 .! !!:!! !:!!:!::!!:!!:!!!:!||| !! !|||:!!||| ! ! !!! alLeuTyrSerMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAl 294896 : TACTATACTCTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGC : 294952 107 : pIleArgArgCysIleArgLeuIleGluLeuSerTrpLysGluIleThrHisProAsp : 125 .!!!:!!.!||||||..! !|||||| !..!|||||| !||| !:!!|||!!: aPheLysHisCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGlu 294953 : GTTCAAGCATTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAA : 295009 126 : AspArgGluIleMetIleLysAsnAlaArgTyrGlyArgGlnLeuIleAlaLeuCysT : 145 !!|||! !||||||||||||||||||! ! ! !!:!::!:!!! !!.! !! !| HisArgAlaIleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheT 295010 : CACCGAGCGATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTA : 295069 146 : hrLeuIleMetTyrSerGlyLeuThrPheTyrTyrValSerIleProIleGlySerGl : 164 ||:!!|||!!:||||||..! !..!! |||:!!!.!! !:::|||... |||.. hrIleIleIleTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAs 295070 : CTATTATAATCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaa : 295126 165 : yArgIleGluAspProGluGluAsnValThrPheIleProLeuMetPheProPhePro : 183 . :!:|||:!! !:!!.!.||| |||.!! ! !!||| .!!||| ! ! nAlaLeuGluAsnLysLysAsnAsn---ThrIleArgAlaLeuProIleProGlyTyr 295127 : cgctTTGGAGAACAAGAAGAATAAT---ACGATTCGTGCGTTACCAATTCCTGGCTAC : 295180 184 : LysLeuIleValAspThrArgPheSerProThrAsnGluIleIle : 198 :!!|||.!!||||||.!! !! !||||||||| !!||||||||| GluLeuPheValAspAlaTyrSerSerProThrTyrGluIleIle 295181 : GAGTTATTCGTAGACGCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: gi|805766344|ref|XP_012135233.1| 10 198 . KQ414889.1 294663 295227 + 250 M 31 93 G 0 3 M 131 393 G 1 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294664 295227 250 + . gene_id 14 ; sequence gi|805766344|ref|XP_012135233.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294664 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294664 295227 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294664 295227 250 + . alignment_id 14 ; Query gi|805766344|ref|XP_012135233.1| ; Align 294664 11 93 ; Align 294760 42 393 ; Align 295153 174 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766344|ref|XP_012135233.1| PREDICTED: uncharacterized protein LOC105661823 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 194 Query range: 175 -> 245 Target range: 202682 -> 202892 176 : IleProLeuMetPheProPheProLysLeuIleValAspThrArgPheSerProThrA : 195 :!! !:!!! !||| !!||| !! !!!!|||:!!|||..!|||!:!||||||..!| LeuSerValThrPheSerPheSerGlyPheIleIleAspValArgTyrSerProValA 202683 : CTTAGTGTGACGTTCTCCTTCTCAGGATTTATCATTGATGTTAGATACAGTCCTGTGA : 202740 196 : snGluIleIlePheSerPheGlnMetMetSerAspAlaThrLeuHisGlyValSerSe : 214 ||||||||.!!||||||.!!!:!!!::!::!!! ! ! !:!!|||||||||!!! snGluIlePhePheSerIleArgIleValAlaValIleLeuIleHisGlyValThrVa 202741 : ACGAGATCTTCTTCTCGATTCGAATCGTAGCTGTCATCCTAATTCACGGTGTCACTGT : 202797 215 : rAlaSerCysSerLeuAlaAlaMetLeuAlaValHisIleCysGlyGlnMetGluVal : 233 !!.!:!!|||!!!|||.!!|||:!!!!!||||||||| !||||||||||||!!:||| lGlyAlaCysCysLeuThrAlaLeuPheAlaValHisAspCysGlyGlnMetAspVal 202798 : AGGAGCTTGTTGCTTGACAGCGTTGTTTGCGGTTCACGATTGCGGCCAGATGGACGTT : 202854 234 : MetValAsnTrpLeuLysHisLeuValAspGlyArg : 245 :!!:!! !||||||:!!||||||:!!||||||||| LeuMetAlaTrpLeuGluHisLeuMetAspGlyArg 202855 : TTGATGGCCTGGCTGGAACATTTGATGGATGGTCGT : 202892 vulgar: gi|805766344|ref|XP_012135233.1| 175 245 . KQ414889.1 202682 202892 + 194 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202683 202892 194 + . gene_id 15 ; sequence gi|805766344|ref|XP_012135233.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202683 202892 . + . KQ414889.1 exonerate:protein2genome:local exon 202683 202892 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202683 202892 194 + . alignment_id 15 ; Query gi|805766344|ref|XP_012135233.1| ; Align 202683 176 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766344|ref|XP_012135233.1| PREDICTED: uncharacterized protein LOC105661823 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 169 -> 280 Target range: 300183 -> 300722 170 : GluGluAsnValThrPheIleProLeuMetPheProPheProLysLeuIleValAspT : 189 ..!|||||| !|||!:!! !|||||| !:!||| ! ! ! ! !.!!:!!|||| ArgGluAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspT 300184 : AGGGAGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATA : 300241 190 : hrArgPheSerProThrAsnGluIleIlePheSerPheGlnMetMetSerAspAlaTh : 208 ||!:! !||||||||| !!||||||:::||| |||... .!.:!!! !! hrGlnThrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIl 300242 : CACAAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGAT : 300298 209 : rLeuHisGlyValSerSerAlaSerCysSerLeuAlaAlaMetLeuAlaValHisIle : 227 !:!!:!!..!|||!!!!!!|||:!!! !||||||||||||!!:!!!!.!..!|||||| eMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIle 300299 : CATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATC : 300355 228 : CysGlyGlnMetGluValMetValAsnTrpLeuLysHisLeuVal-----AspGlyAr : 245 |||||||||!!::!!:!!..!:!! ! |||:!! !!||||||#####|||||||| CysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuVal#####AspGlyAr 300356 : TGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGGGAG : 300414 246 : gPheLeuGluLeuThrGluLysThrLeuArgTyrIleSerLeuVal{G} >>>> Ta : 261 | !..!! !:!! !... ! !|||||| !||| ! !{:} gGluGlyArgArgSer***SerPheGlyArgTyrArgSerArgSer{G}++ 300415 : AGAAGGACGACGGTCCTGATCCTTTGGTCGTTATCGTTCGAGATCA{C}gt....... : 300465 262 : rget Intron 1 >>>> {lu}PheLeuGlyCysThrLeuAsnLeuCysLeuLeuS : 273 201 bp {!!}.!!!!!! !! !||||||! !||||||||||||. -+{ln}IlePheGluSerThrLeuIleLeuCysLeuLeuG 300466 : ..................gg{AA}ATCTTCGAGTCCACGCTGATTTTGTGTTTGCTCG : 300699 274 : erTyrTyrValLeuMetValArg : 280 .!|||||| !|||:!!|||!:! luTyrTyrCysLeuValValLys 300700 : AATACTACTGTTTGGTGGTAAAA : 300722 vulgar: gi|805766344|ref|XP_012135233.1| 169 280 . KQ414889.1 300183 300722 + 151 M 73 219 F 0 5 M 18 54 S 0 1 5 0 2 I 0 197 3 0 2 S 1 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300184 300722 151 + . gene_id 16 ; sequence gi|805766344|ref|XP_012135233.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300184 300462 . + . KQ414889.1 exonerate:protein2genome:local exon 300184 300462 . + . insertions 0 ; deletions 0 ; frameshifts 5 KQ414889.1 exonerate:protein2genome:local splice5 300463 300464 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300463 300663 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300662 300663 . + . intron_id 0 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 300664 300722 . + . KQ414889.1 exonerate:protein2genome:local exon 300664 300722 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300184 300722 151 + . alignment_id 16 ; Query gi|805766344|ref|XP_012135233.1| ; Align 300184 170 219 ; Align 300408 243 54 ; Align 300666 262 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766344|ref|XP_012135233.1| PREDICTED: uncharacterized protein LOC105661823 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 244 -> 280 Target range: 224137 -> 224245 245 : ArgPheLeuGluLeuThrGluLysThrLeuArgTyrIleSerLeuValGluPheLeuG : 264 ||||||||| !! !|||||||||.!!|||!:! ! :!!|||!!!||||||||||||| ArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValGluPheLeuG 224138 : AGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGGAATTTCTAG : 224195 265 : lyCysThrLeuAsnLeuCysLeuLeuSerTyrTyrValLeuMetValArg : 280 |||||! !||||||:!!|||||||||.!!|||||||||:!!:!!|||||| lyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleValValArg 224196 : GCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTGGTACGA : 224245 vulgar: gi|805766344|ref|XP_012135233.1| 244 280 . KQ414889.1 224137 224245 + 129 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224138 224245 129 + . gene_id 17 ; sequence gi|805766344|ref|XP_012135233.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224138 224245 . + . KQ414889.1 exonerate:protein2genome:local exon 224138 224245 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224138 224245 129 + . alignment_id 17 ; Query gi|805766344|ref|XP_012135233.1| ; Align 224138 245 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766344|ref|XP_012135233.1| PREDICTED: uncharacterized protein LOC105661823 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 11 -> 115 Target range: 299668 -> 299983 12 : GluHisGluArgAsnValAsnLeuSerIleLysTrpCysArgArgIleLeuThrIleI : 31 .!.:!!:!!!.!:!!:!!:!!! !!!!:!::!! !|||!:! !!:!:|||! ! !| HisTyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProI 299669 : CATTACCAAAATGACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTA : 299726 32 : leAlaValTrpPro<->GlnSerProAspPheThrLeuLeuGlnLysCysPheTyrAr : 49 ||!.!||||||! ! ! !..!! ! !! !!:! !|||:!! ! ! !!! ! leGlyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuValSerIl 299727 : TCGGAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGAT : 299783 50 : gPheArgAsnValMetIlePheSerPheLeuSerPheLeuCysValProCysThrIle : 68 ! !!! !! ..!!!: !|||||| !|||! !|||:!! !:!!|||! ! ! ! eValLeuMetThrIleCysPheSerSerLeuPhePheIleValLeuProSerGlyHis 299784 : CGTTCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCAT : 299840 69 : TyrMetIleValGluValGluAspValTyrAsnLysIleLysValPheGlyProThrS : 88 |||!!:.!! !!! !! !:!!..!:!!:!! !|||:!:|||||||||||||||..!. TyrIlePhePheAlaGluLysSerIleHisValLysValLysValPheGlyProValG 299841 : TACATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTG : 299900 89 : erPheCysValMetAlaValIleLysTyrTyrLeuLeuIleLeuHisGluSerAspIl : 107 !!||||||:!! :!!:!!:!!||||||! !! !||| !|||:!!! .!!! .! lyPheCysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPh 299901 : GTTTTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTT : 299957 108 : eArgArgCysIleArgLeuIleGlu : 115 !..!|||||||||!:!! !:!!||| eGluArgCysIleGlnHisValGlu 299958 : CGAACGATGCATCCAACACGTCGAG : 299983 vulgar: gi|805766344|ref|XP_012135233.1| 11 115 . KQ414889.1 299668 299983 + 125 M 24 72 G 0 3 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299669 299983 125 + . gene_id 18 ; sequence gi|805766344|ref|XP_012135233.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299669 299983 . + . KQ414889.1 exonerate:protein2genome:local exon 299669 299983 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299669 299983 125 + . alignment_id 18 ; Query gi|805766344|ref|XP_012135233.1| ; Align 299669 12 72 ; Align 299744 36 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766347|ref|XP_012135234.1| PREDICTED: uncharacterized protein LOC100876418 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 725 Query range: 32 -> 273 Target range: 217153 -> 217876 33 : GluHisGluArgAsnValAsnLeuSerIleLysTrpCysArgArgIleLeuThrIleI : 52 |||:::|||:::|||:::||||||||||||:!!||| !||| !!:!:|||! ! ! GluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProM 217154 : GAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGA : 217211 53 : leAlaValTrpProGlnProProAspPheThrLeuSerGlnLysCysPheTyrArgPh : 71 !:!.!:!!||||||.!. !!! ! ! !||| !|||!:!||| !.!!|||!:!.! etGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLe 217212 : TGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACT : 217268 72 : eArgAsnValMetIlePheSerPheLeuSerTyrLeuSerValProCysIleValTyr : 90 .! !|||!.!:!: !!:!.!!!!.:!!|||!:!|||! !||||||||| !:!!||| uIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyr 217269 : GATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTAC : 217325 91 : MetIleValGluValGlnAspValTyrAsnLysIleLysValPheGlyProThrSerP : 110 :!!.!!:!!||||||:!!|||:!!|||:!!|||:!:|||:!!||||||||| !! !| ValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIleP 217326 : GTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCT : 217385 111 : heCysValMetAlaLeuIleLysTyrTyrValLeuIleValHisGluSerAspIleAr : 129 ||||||||||||||!!!:!!||||||||| !||||||||||||:!!:!!|||||||| heCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleAr 217386 : TCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCG : 217442 130 : gArgCysIleThrLeuIleGluLeuSerTrpLysAspIleThrHisProGluAspArg : 148 |..!|||:!:! ! !||||||! !..!|||!:!:!!:!!! ! ! !:!!|||||| gGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArg 217443 : CGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGG : 217499 149 : GluIleMetIleLysAsnAlaArgTyrGlySerGlnLeuIleAlaLeuCysThrPheI : 168 ||| |||||| !||||||!.!!:!||| !!:!!|||:!! !||||||||||||. GluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPheP 217500 : GAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCT : 217559 169 : leMetTyrSerGlyLeuThrPheTyrTyrValSerIleProIleGlySerGlyArgIl : 187 !!||||||||||||......|||||||||::!:!!|||||||||.!! !|||||||| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIl 217560 : TCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAAT : 217616 188 : eGluAspProGluGluAsnValThrTyrIleProLeuMetPheProPheProLysVal : 206 | !... !.!.! !|||:!!|||!:!|||||||||:!!||||||||| !!||| ! eLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyr 217617 : TCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTAT : 217673 207 : IleValAspThrArgPheSerProThrAsnGluIleIlePheSerPheGlnMetMetS : 226 |||:!!|||||||||!:!!!!|||||||||||||||:!:|||! !.!!|||:!!!!:: IleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleA 217674 : ATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCG : 217733 227 : erAspAlaThrLeuHisGlyValSerSerAlaSerCysSerLeuAlaSerMetLeuAl : 245 !!! ||| !:!!||||||:!!!!!||||||:!!||||||||||||:!! !!!|| laGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAl 217734 : CTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGC : 217790 246 : aAlaHisIleCysGlyGlnMetGluIleMetValAsnTrpMetLysHisLeuValAsp : 264 |!.!||| !|||||||||!!:|||:!::!!:!!||||||:!!:!!||||||:!!||| aValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAsp 217791 : GGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGAC : 217847 265 : GlyArgSerAspLeuProLysSerVal : 273 ||||||:!!|||:!! ! ! !!!||| GlyArgAlaAspMetSerAspThrVal 217848 : GGTAGAGCGGATATGAGCGATACTGTG : 217876 vulgar: gi|805766347|ref|XP_012135234.1| 32 273 . KQ414889.1 217153 217876 + 725 M 241 723 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217154 217876 725 + . gene_id 1 ; sequence gi|805766347|ref|XP_012135234.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217154 217876 . + . KQ414889.1 exonerate:protein2genome:local exon 217154 217876 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217154 217876 725 + . alignment_id 1 ; Query gi|805766347|ref|XP_012135234.1| ; Align 217154 33 723 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766347|ref|XP_012135234.1| PREDICTED: uncharacterized protein LOC100876418 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 710 Query range: 32 -> 285 Target range: 221357 -> 222116 33 : GluHisGluArgAsnValAsnLeuSerIleLysTrpCysArgArgIleLeuThrIleI : 52 !!::!!:!!! !||||||!!.||||||:!::!!! ! !!||| !!||||||! ! | AspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProI 221358 : GATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGA : 221415 53 : leAlaValTrpProGlnProProAspPheThrLeuSerGlnLysCysPheTyrArgPh : 71 ||!.!|||||||||.!. !! !!:!!.!!:!! ! !:!!!:!! !.!!||| !!.! leGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLe 221416 : TCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 72 : eArgAsnValMetIlePheSerPheLeuSerTyrLeuSerValProCysIleValTyr : 90 .! !||||||:!: !!:!|||.!.:!!!!!!:!|||! !|||||||||! !:!!||| uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 91 : MetIleValGluValGlnAspValTyrAsnLysIleLysValPheGlyProThrSerP : 110 :!!|||:!!||||||:!!||||||||||||!:!||||||:!!!!.|||||| !|||| ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 111 : heCysValMetAlaLeuIleLysTyrTyrValLeuIleValHisGluSerAspIleAr : 129 ||||||||||||||!!!:!!||||||:!!:!!||||||:!!:!!|||!:!|||||||| heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 130 : gArgCysIleThrLeuIleGluLeuSerTrpLysAspIleThrHisProGluAspArg : 148 |..!|||||| !! !||||||! !..!||||||:!!||||||:!! !!:!!|||!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 149 : GluIleMetIleLysAsnAlaArgTyrGlySerGlnLeuIleAlaLeuCysThrPheI : 168 !!:|||||||||:!!||||||! !!:!|||!!!!:!|||||| !:!!|||||||||. AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 169 : leMetTyrSerGlyLeuThrPheTyrTyrValSerIleProIleGlySerGlyArgIl : 187 !!||||||||||||......|||||||||::!:!!||||||.!!.!! !|||!:!|| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 188 : eGluAspProGluGluAsnValThrTyrIleProLeuMetPheProPheProLysVal : 206 | ! ! !!!: |||||||||:::||||||:!!:!!||||||||| !!!:! !! eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 207 : IleValAspThrArgPheSerProThrAsnGluIleIlePheSerPheGlnMetMetS : 226 |||||||||||||||!:!||||||..!|||||||||:!:||||||.!!|||!!:|||: IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 227 : erAspAlaThrLeuHisGlyValSerSerAlaSerCysSerLeuAlaSerMetLeuAl : 245 !!! !||| !:!!|||.!!:!!!!!||||||:!!|||||||||!.!:!!|||!!!|| laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 246 : aAlaHisIleCysGlyGlnMetGluIleMetValAsnTrpMetLysHisLeuValAsp : 264 |!.!||| !||||||||||||:!!:!::!!:!!!:!|||:!!|||||||||:!!:!! aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 265 : GlyArgSerAspLeuProLysSerValLeuArgAlaTyrArgGluAsnThrSerIleH : 284 ||||||:!!|||:!! !!!.!:!||| !||| ! !:!!! !..!!:! !| GlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnH 222052 : GGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAAC : 222111 285 : isIle : 285 ||:!! isVal 222112 : ACGTT : 222116 vulgar: gi|805766347|ref|XP_012135234.1| 32 285 . KQ414889.1 221357 222116 + 710 M 253 759 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221358 222116 710 + . gene_id 2 ; sequence gi|805766347|ref|XP_012135234.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221358 222116 . + . KQ414889.1 exonerate:protein2genome:local exon 221358 222116 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221358 222116 710 + . alignment_id 2 ; Query gi|805766347|ref|XP_012135234.1| ; Align 221358 33 759 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766347|ref|XP_012135234.1| PREDICTED: uncharacterized protein LOC100876418 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 577 Query range: 31 -> 273 Target range: 226906 -> 227632 32 : AspGluHisGluArgAsnValAsnLeuSerIleLysTrpCysArgArgIleLeuThrI : 51 :!!!!::!!:!!..! !!:!!||||||||||||:!!! ! !||| !!:!:|||! ! AsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysP 226907 : AACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAAC : 226964 52 : leIleAlaValTrpProGlnProProAspPheThrLeuSerGlnLysCysPheTyrAr : 70 !:!!!.!:!!||||||..! !!! ! ! !:!!! !! ! !!:!||||||! ! ! roLeuGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTr 226965 : CACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTG : 227021 71 : gPheArgAsnValMetIlePheSerPheLeuSerTyrLeuSerValProCysIleVal : 89 !!!.! !..! !!:!: !!:!:!!.!.:!!|||!:! !! !||| !! !! !:!! pLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeu 227022 : GTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTG : 227078 90 : TyrMetIleValGluValGlnAspValTyrAsnLysIleLysValPheGlyProThrS : 109 |||:!!:!!:!!||||||:!!! !!.!||||||! !:!:|||:!!.!!||||||! !| TyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetS 227079 : TACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGT : 227138 110 : erPheCysValMetAlaLeuIleLysTyrTyrValLeuIleValHisGluSerAspIl : 128 |||||! !!.!|||:!!|||:!!||||||! !:!!|||! !!||||||..!||||| erPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIl 227139 : CCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACAT : 227195 129 : eArgArgCysIleThrLeuIleGluLeuSerTrpLysAspIleThrHisProGluAsp : 147 |! !..!|||:!! !! !|||:!!! !..!||||||:!!|||! !:!!! !|||||| eLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAsp 227196 : TCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGAC : 227252 148 : ArgGluIleMetIleLysAsnAlaArgTyrGlySerGlnLeuIleAlaLeuCysThrP : 167 |||.!.:!:|||:!:! ! !!||| !||||||!!!:!!||||||.!!:!!||||||| ArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrP 227253 : AGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGT : 227312 168 : heIleMetTyrSerGlyLeuThrPheTyrTyrValSerIleProIleGlySerGlyAr : 186 ||.!!:!:!:!|||.........|||:::|||:!! !:!!||||||..!:!!|||!! hePheValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySe 227313 : TTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAG : 227369 187 : gIleGluAspProGluGluAsnValThrTyrIleProLeuMetPheProPheProLys : 205 !:!!! ! !!!:! !||| !!:!||||||! !:!! !||||||||||||||| rValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLys 227370 : TGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAA : 227426 206 : ValIleValAspThrArgPheSerProThrAsnGluIleIlePheSerPheGlnMetM : 225 :!!|||!.!|||..!|||!:!|||||| !|||||||||.!!|||||| ! |||.!.: IleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheV 227427 : ATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTG : 227486 226 : etSerAspAlaThrLeuHisGlyValSerSerAlaSerCysSerLeuAlaSerMetLe : 244 !:!!!! ! !..!||||||||||||!!!||||||:!!||||||:!!|||:!!:!!|| alThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLe 227487 : TAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCT : 227543 245 : uAlaAlaHisIleCysGlyGlnMetGluIleMetValAsnTrpMetLysHisLeuVal : 263 ||||!.!||| !|||||||||||||||:!::!!|||::!|||:!! !||||||:!! uAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIle 227544 : TGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATC : 227600 264 : AspGlyArgSerAspLeuProLysSerVal : 273 |||||||||:!!|||:!! !|||!!!:!! AspGlyArgAlaAspMetSerLysThrLeu 227601 : GACGGCAGAGCGGATATGAGCAAAACACTG : 227632 vulgar: gi|805766347|ref|XP_012135234.1| 31 273 . KQ414889.1 226906 227632 + 577 M 242 726 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226907 227632 577 + . gene_id 3 ; sequence gi|805766347|ref|XP_012135234.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226907 227632 . + . KQ414889.1 exonerate:protein2genome:local exon 226907 227632 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226907 227632 577 + . alignment_id 3 ; Query gi|805766347|ref|XP_012135234.1| ; Align 226907 32 726 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766347|ref|XP_012135234.1| PREDICTED: uncharacterized protein LOC100876418 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 575 Query range: 22 -> 273 Target range: 212821 -> 213574 23 : LysLysThrArgValSerLysGluIleAspGluHisGluArgAsnValAsnLeuSerI : 42 ||| ! !!:!:!!..! ||| ! ! :!!|||!:!...||||||||||||| LysAspGluLysLeuGlnValGluAspCysThrTyrGluLysArgValAsnLeuSerI 212822 : AAAGATGAGAAATTGCAGGTCGAAGACTGTACCTACGAGAAACGtgtaaatttaagta : 212879 43 : leLysTrpCysArgArgIleLeuThrIleIleAlaValTrpProGlnProProAspPh : 61 || !||| !||| !!:!!|||! ! !! !.!:!!||||||.!. ! !! !! ! leProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspLysSerTyrVa 212880 : tacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCTACGT : 212936 62 : eThrLeuSerGlnLysCysPheTyrArgPheArgAsnValMetIlePheSerPheLeu : 80 !:!!! !! !:!!||| !.!! !|||!!. !|||..!:!: !!:!.!!!!.:!! lSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLeuIle 212937 : TTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATC : 212993 81 : SerTyrLeuSerValProCysIleValTyrMetIleValGluValGlnAspValTyrA : 100 .!!|||||| !:!!||||||! !:!!|||:!!.!!:!!!!:|||::::::::::::. GlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGluAsnIlePheL 212994 : GGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatatattta : 213053 101 : snLysIleLysValPheGlyProThrSerPheCysValMetAlaLeuIleLysTyrTy : 119 ..:::|||:!!:!!|||||| ! !:!!||||||||| |||||| ||||||:! ysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHi 213054 : aagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCA : 213110 120 : rValLeuIleValHisGluSerAspIleArgArgCysIleThrLeuIleGluLeuSer : 138 ! !||||||:!!|||! ..!|||||||||! !|||:!! !! !!!::!!! !..! sSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMetLysTyrAsp 213111 : TTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATATGAC : 213167 139 : TrpLysAspIleThrHisProGluAspArgGluIleMetIleLysAsnAlaArgTyrG : 158 ||||||:!!||||||||| !||||||!:!||||||||| !||||||!!!!:!| TrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSerPheG 213168 : TGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTG : 213227 159 : lySerGlnLeuIleAlaLeuCysThrPheIleMetTyrSerGlyLeuThrPheTyrTy : 177 ||!.!::!:!!:!:.!!:!!|||.!!|||.!!||||||!!!|||!!!|||||||||!: lyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheThrPheTyrPh 213228 : GAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTT : 213284 178 : rValSerIleProIleGlySerGlyArgIleGluAspProGluGluAsnValThrTyr : 196 !:!! !:!!||||||.!!:!!! !!:!!!:! !! !!!: |||||||||!:! eLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAsnValThrPhe 213285 : CCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTC : 213341 197 : IleProLeuMetPheProPheProLysValIleValAspThrArgPheSerProThrA : 216 ! !! !:!!:!! !!||| !! !!!:! !!|||||||||..!|||!:!||||||..!| ArgGlnMetValValProValSerArgPheIleValAspValArgTyrSerProValA 213342 : AGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGA : 213401 217 : snGluIleIlePheSerPheGlnMetMetSerAspAlaThrLeuHisGlyValSerSe : 235 ||||||||.!!|||! !.!!|||!!:!!::!!! !.! !:!!|||!.!:!!:!! snGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaVa 213402 : ACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGT : 213458 236 : rAlaSerCysSerLeuAlaSerMetLeuAlaAlaHisIleCysGlyGlnMetGluIle : 254 !!.!:!!||||||||||||:!!:!!!!!|||!.!||| !||||||||||||! ||| lValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIle 213459 : GGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATT : 213515 255 : MetValAsnTrpMetLysHisLeuValAspGlyArgSerAspLeuProLysSerVal : 273 :!!:!!!:!|||:!!:!!||||||:!!|||||||||..!|||:!! !|||!:!||| LeuMetSerTrpLeuGluHisLeuIleAspGlyArgGluAspMetSerLysAsnVal 213516 : TTGATGAGCTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGCAAGAATGTG : 213574 vulgar: gi|805766347|ref|XP_012135234.1| 22 273 . KQ414889.1 212821 213574 + 575 M 251 753 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212822 213574 575 + . gene_id 4 ; sequence gi|805766347|ref|XP_012135234.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212822 213574 . + . KQ414889.1 exonerate:protein2genome:local exon 212822 213574 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212822 213574 575 + . alignment_id 4 ; Query gi|805766347|ref|XP_012135234.1| ; Align 212822 23 753 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766347|ref|XP_012135234.1| PREDICTED: uncharacterized protein LOC100876418 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 495 Query range: 32 -> 273 Target range: 208191 -> 208914 33 : GluHisGluArgAsnValAsnLeuSerIleLysTrpCysArgArgIleLeuThrIleI : 52 .!.:!!:!!!.!:!!:!!!:!!!!!:!:!!::: ! ! ! !!! |||! !|||| AsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuLysIleI 208192 : AACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGAAGATAA : 208249 53 : leAlaValTrpProGlnProProAspPheThrLeuSerGlnLysCysPheTyrArgPh : 71 ||!.! !||||||::! !! !||| !:!!! !! !:!!!!. !! :!!! !.! leGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHisIleLe 208250 : TCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCATATTCT : 208306 72 : eArgAsnValMetIlePheSerPheLeuSerTyrLeuSerValProCysIleValTyr : 90 ! !||||||:!:! ! !!!!!!.|||.!!!:!:!! !:!!||| ! !:!!!:! uLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGlyMetPhe 208307 : CTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATGTTC : 208363 91 : MetIleValGluValGlnAspValTyrAsnLysIleLysValPheGlyProThrSerP : 110 !|||:!!! !|||:!!||| !!|||:!!:!!:!!|||:!!! !.!! !! !|||| AlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaLeuSerP 208364 : GCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTCTGAGCT : 208423 111 : heCysValMetAlaLeuIleLysTyrTyrValLeuIleValHisGluSerAspIleAr : 129 ||! !:!!||||||!!!! |||||| :!!:!!! !|||!.!|||.!!|||||||| hePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAspIleAr 208424 : TCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGACATACG : 208480 130 : gArgCysIleThrLeuIleGluLeuSerTrpLysAspIleThrHisProGluAspArg : 148 |!:!|||:!! !! !:!!||| !..!|||!:!:!!:!: !||| !||||||||| gLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGluAspArg 208481 : GAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAGGACAGG : 208537 149 : GluIleMetIleLysAsnAlaArgTyrGlySerGlnLeuIleAlaLeuCysThrPheI : 168 :!!||||||:!: ! ||||||!!!!:!!.!!!!:!!||||||!.!:!!||| ! !. LysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysGlyAlaP 208538 : AAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCGGAGCTT : 208597 169 : leMetTyrSerGlyLeuThrPheTyrTyrValSerIleProIleGlySerGlyArgIl : 187 !!||||||.!!|||::: |||||||||:!!:!!:!:|||:!! ! !!! !!:!:! heMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAspLysVa 208598 : TCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGACAAGGT : 208654 188 : eGluAspProGluGluAsnValThrTyrIleProLeuMetPheProPheProLysVal : 206 !! !!: !! ! |||:!!||||||! ! !|||:!:!:!||| !!|||||| !! lValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValProLysPhe 208655 : CGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCTAAGTTC : 208711 207 : IleValAspThrArgPheSerProThrAsnGluIleIlePheSerPheGlnMetMetS : 226 |||:!!|||..!|||!:!||||||..!|||||||||.!!!:!!!! ! |||:!!:!!| IleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnLeuLeuS 208712 : ATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAATTGTTGT : 208771 227 : erAspAlaThrLeuHisGlyValSerSerAlaSerCysSerLeuAlaSerMetLeuAl : 245 ||! ! !..! !|||..!:!!!!! !!.!:!!|||.!!||||||:!!:!!||||| erGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLeuLeuAl 208772 : CGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCTGCTCGC : 208828 246 : aAlaHisIleCysGlyGlnMetGluIleMetValAsnTrpMetLysHisLeuValAsp : 264 | !||| |||||||||:!!:!!|||:!!:!!::!||||||:!! ! ||||||||| aMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeuValAsp 208829 : GATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTGGTCGAT : 208885 265 : GlyArgSerAspLeuProLysSerVal : 273 ||||||..!||| ! !|||!:!:!! GlyArgGluAspGluGluLysAsnLeu 208886 : GGACGGGAGGACGAGGAGAAGAATTTG : 208914 vulgar: gi|805766347|ref|XP_012135234.1| 32 273 . KQ414889.1 208191 208914 + 495 M 241 723 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208192 208914 495 + . gene_id 5 ; sequence gi|805766347|ref|XP_012135234.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208192 208914 . + . KQ414889.1 exonerate:protein2genome:local exon 208192 208914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208192 208914 495 + . alignment_id 5 ; Query gi|805766347|ref|XP_012135234.1| ; Align 208192 33 723 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766347|ref|XP_012135234.1| PREDICTED: uncharacterized protein LOC100876418 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 323 Query range: 27 -> 266 Target range: 232423 -> 233140 28 : SerLysGluIleAspGluHisGluArgAsnValAsnLeuSerIleLysTrpCysArgA : 47 |||:::!!:! .!. ! !|||:!! !.!.! !||||||:!! ! !||| SerArgAspThrLeuAsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgT 232424 : TCCCGCGACACGTTGAACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTT : 232481 48 : rgIleLeuThrIleIleAlaValTrpProGlnProProAspPheThrLeuSerGlnLy : 66 !!.!!|||||| !!:!.!!.!||||||!:: ! !!!!: !:!! !:!!|||:! rpPheLeuThrProMetGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGl 232482 : GGTTTCTGACACCGATGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCA : 232538 67 : sCysPheTyrArgPheArgAsnValMetIlePheSerPheLeuSerTyrLeuSerVal : 85 ! .!! !:!.!. !!..:!!! ! !|||.!.:!!! !! !! !! !||| nLeuLeuAlaLysLeuLeuArgLeuThrCysHisSerLeuMetIleSerSerIleVal 232539 : ACTACTCGCGAAACTGTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTA : 232595 86 : ProCysIleValTyrMetIleValGluValGlnAspValTyrAsnLysIleLysValP : 105 |||||||||:!!!:!!!::!: !!|||! ! !..!:!! ! .!.!:!!!:||| !. ProCysIleLeuPheIleLeuPheGluAspThrSerLeuGluGluArgMetLysSerI 232596 : CCGTGCATTCTGTTCATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTA : 232655 106 : heGlyProThrSerPheCysValMetAlaLeuIleLysTyrTyrValLeuIleValHi : 124 !!||||||! !||| !! !:!!|||!.! !:!:!!.|||! ! !|||:!:!.! ! leGlyProMetSerHisPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLy 232656 : TCGGTCCTATGAGTCACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAA : 232712 125 : sGluSerAspIleArgArgCysIleThrLeuIleGluLeuSerTrpLysAspIleThr : 143 ! !!:!||||||! ! !|||:!: !! !:!::!!! !..!|||::!:!!:!!! ! sAlaAsnAspIleLeuTyrCysValGluGlnValLysGlnAspTrpArgAsnValLys 232713 : GGCGAACGACATCCTCTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAG : 232769 144 : HisProGluAspArgGluIleMetIleLysAsnAlaArgTyrGlySerGlnLeuIleA : 163 ! |||! !!|||!!::!:|||:!:|||||||||!:! !||| !!..!:!! !. LysProValHisArgAspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaC 232770 : AAACCCGTCCATCGTGATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTT : 232829 164 : laLeuCysThrPheIleMetTyrSerGlyLeuThrPheTyrTyrValSerIleProIl : 182 .!:!!..!.!!||| !|||:!!!!!|||:!! !! ! !! ! :!! !! ! !:! ysIleAlaAlaPheCysMetHisThrGlyValGlySerAspGluIleValThrGlyLe 232830 : GCATCGCTGCGTTTTGCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACT : 232886 183 : eGlySerGlyArgIleGluAspProGluGluAsnValThrTyrIleProLeuMetPhe : 201 ! !!! !.!!! !.!! ! ! !.!.|||!:! !:!! !|||||| ! ! uArgMetSerThrPheTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCys 232887 : TCGTATGAGCACGTTCTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGC : 232943 202 : ProPheProLysValIleValAspThrArgPheSerProThrAsnGluIleIlePheS : 221 !!||| !! ! !:!::!!||||||||||||||||||||||||||||||!!:||| ThrPheTyrThrLysLeuMetAspThrArgPheSerProThrAsnGluIleMetPheV 232944 : ACGTTCTACACGAAGCTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCG : 233003 222 : erPheGlnMetMetSerAspAlaThrLeuHisGlyValSerSerAlaSerCysSerLe : 240 !.!.||| :!:|||! !! !:!!:!!..!|||!!! !!.!:!!|||.!!|| alLeuGlnCysLeuSerGlyPheIleValAsnSerValThrValGlyAlaCysGlyLe 233004 : TTCTACAGTGTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTT : 233060 241 : uAlaSerMetLeuAlaAlaHisIleCysGlyGlnMetGluIleMetValAsnTrpMet : 259 |!.!:!!:!:|||||| !||| |||||||||:!!.!.:!::!!:!!::: :!! uGlyAlaValLeuAlaMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeu 233061 : AGGCGCTGTTCTAGCGATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTG : 233117 260 : LysHisLeuValAspGlyArg : 266 ! !!|||||||||!.!!:! AspAspLeuValAspAlaLys 233118 : GACGATTTGGTGGACGCGAAA : 233140 vulgar: gi|805766347|ref|XP_012135234.1| 27 266 . KQ414889.1 232423 233140 + 323 M 239 717 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232424 233140 323 + . gene_id 6 ; sequence gi|805766347|ref|XP_012135234.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232424 233140 . + . KQ414889.1 exonerate:protein2genome:local exon 232424 233140 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232424 233140 323 + . alignment_id 6 ; Query gi|805766347|ref|XP_012135234.1| ; Align 232424 28 717 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766347|ref|XP_012135234.1| PREDICTED: uncharacterized protein LOC100876418 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 301 Query range: 38 -> 273 Target range: 266634 -> 267339 39 : AsnLeuSerIleLysTrpCysArgArgIleLeuThrIleIleAlaValTrpProGlnP : 58 :!!! !|||:!::!!! ! !||| !!.!!|||! ! !|||!.!!.!||||||! ! AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProL 266635 : GATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGT : 266692 59 : roProAspPheThrLeuSerGlnLysCysPheTyrArgPheArgAsnValMetIlePh : 77 ! !! ! :!! ! !:!!::! ! !!! ! ! ! !! !|||!!: !!: euSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266693 : TGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 78 : eSerPheLeuSerTyrLeuSerValProCysIleValTyrMetIleValGluValGln : 96 !!!!! !:!! !!:! ! !:!!||||||:!: !!:!!:!::!!:!!|||! !:!! rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 97 : AspValTyrAsnLysIleLysValPheGlyProThrSerPheCysValMetAlaLeuI : 116 ..!:!! !!..|||:!:||||||||||||||| !||| !!! !!:!:!.! !| SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 117 : leLysTyrTyrValLeuIleValHisGluSerAspIleArgArgCysIleThrLeuIl : 135 ||!!.||| !..!|||:!::!!!.!...!.!!!:|||||| !!|||:!! !! !!! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 136 : eGluLeuSerTrpLysAspIleThrHisProGluAspArgGluIleMetIleLysAsn : 154 ::!! !..!|||!:! !:!:|||...|||||||||!:!:!!:!:|||:!:|||||| tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 155 : AlaArgTyrGlySerGlnLeuIleAlaLeuCysThrPheIleMetTyrSerGlyLeuT : 174 |||||| !||| !! ! :!! ! !!!!|||.!! .!!||| ! !!!|||:!! AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 175 : hrPheTyrTyrValSerIleProIleGlySerGlyArgIleGluAspProGluGluAs : 193 ! !|||! !|||! !! !!.!! !! ! !! !:!:|||! ! !.!.|||!. euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 194 : nValThrTyrIleProLeuMetPheProPheProLysValIleValAspThrArgPhe : 212 ! !! ! !! !||| ! ! !! !! !||| !!!::!!! ..! ! ! rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 213 : SerProThrAsnGluIleIlePheSerPheGlnMetMetSerAspAlaThrLeuHisG : 232 ||||||||||||||||||:!!.!! !! |||.!.:!:|||! !! !:!!:!!. SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 233 : lyValSerSerAlaSerCysSerLeuAlaSerMetLeuAlaAlaHisIleCysGlyGl : 251 .! ! ! !!.!:!!! !|||||||||:!!:!!!!!||||||||| |||||||| erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 252 : nMetGluIleMetValAsnTrpMetLysHisLeuValAspGlyArgSerAspLeuPro : 270 |:!!...:!::!!:!!! |||!!:|||.!.!!!|||:!! !! !!!!||| ! ! nLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsn 267272 : GCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAAT : 267328 271 : LysSerVal : 273 |||!:!||| LysAsnVal 267329 : AAGAACGTT : 267339 vulgar: gi|805766347|ref|XP_012135234.1| 38 273 . KQ414889.1 266634 267339 + 301 M 235 705 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266635 267339 301 + . gene_id 7 ; sequence gi|805766347|ref|XP_012135234.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266635 267339 . + . KQ414889.1 exonerate:protein2genome:local exon 266635 267339 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266635 267339 301 + . alignment_id 7 ; Query gi|805766347|ref|XP_012135234.1| ; Align 266635 39 705 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766347|ref|XP_012135234.1| PREDICTED: uncharacterized protein LOC100876418 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 292 Query range: 38 -> 264 Target range: 256649 -> 257327 39 : AsnLeuSerIleLysTrpCysArgArgIleLeuThrIleIleAlaValTrpProGlnP : 58 :!!! !|||:!!:!!! ! !||| !!.!!|||! ! !|||!.!!.!||||||! AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS 256650 : GATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCT : 256707 59 : roProAspPheThrLeuSerGlnLysCysPheTyrArgPheArgAsnValMetIlePh : 77 !! !!..! !||| ! !:!!::! ! !!! ! ! !! !|||:!!:!: !!: erSerSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTy 256708 : CGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTA : 256764 78 : eSerPheLeuSerTyrLeuSerValProCysIleValTyrMetIleValGluValGln : 96 !.!!! !:!!! !!:! !! !:!!||||||:!::!!:!!:!:.!!:!!!!:! !.!. rGlySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAsp 256765 : TGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGAC : 256821 97 : AspValTyrAsnLysIleLysValPheGlyProThrSerPheCysValMetAlaLeuI : 116 ..! !!||| |||:::||| |||||||||! !||| !!! :!!!!:::!! ! SerPheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysA 256822 : AGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTG : 256881 117 : leLysTyrTyrValLeuIleValHisGluSerAspIleArgArgCysIleThrLeuIl : 135 !!!.||| :!!|||:!::!!!!.! !!.!||||||||| !|||:!! !! !|| laAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIl 256882 : CCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATAT : 256938 136 : eGluLeuSerTrpLysAspIleThrHisProGluAspArgGluIleMetIleLysAsn : 154 |||| !..!|||!:! :!:! !... !:!!|||!:!:!!:!:|||!!:|||||| eGluThrAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsn 256939 : AGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAAC : 256995 155 : AlaArgTyrGlySerGlnLeuIleAlaLeuCysThrPheIleMetTyrSerGlyLeuT : 174 ||||||!:!||| !! ! :!! !.!!!!!|||.!! !|||||| ! ||||||::: AlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValP 256996 : GCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttt : 257055 175 : hrPheTyrTyrValSerIleProIleGlySerGlyArgIleGluAspProGluGluAs : 193 ::::::|||||| !!:!:..!!!!! !! !|||.!.! !.!.|||!. heCysPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluTh 257056 : tctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAAC : 257112 194 : nValThrTyrIleProLeuMetPheProPheProLysValIleValAspThrArgPhe : 212 ...!! ! ! !||| !! !! ! !||| !:!::!!:!!..! ! rThrIleValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGln 257113 : AACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAG : 257169 213 : SerProThrAsnGluIleIlePheSerPheGlnMetMetSerAspAlaThrLeuHisG : 232 ||||||||||||||||||:!: !!! !.!.|||! !|||... !! ! ! ! SerProThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrT 257170 : AGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTA : 257229 233 : lyValSerSerAlaSerCysSerLeuAlaSerMetLeuAlaAlaHisIleCysGlyGl : 251 ! !!!! !::!! !! !|||||||||:!!:!:!!!|||.!!||| ! !||||| hrSerThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGl 257230 : CTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCA : 257286 252 : nMetGluIleMetValAsnTrpMetLysHisLeuValAsp : 264 |:!! :!::!::!!:::|||!!:! !.!.!!!|||:!! nLeuThrValLeuMetSerTrpIleThrGluPheValAsn 257287 : GTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAAT : 257327 vulgar: gi|805766347|ref|XP_012135234.1| 38 264 . KQ414889.1 256649 257327 + 292 M 226 678 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256650 257327 292 + . gene_id 8 ; sequence gi|805766347|ref|XP_012135234.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256650 257327 . + . KQ414889.1 exonerate:protein2genome:local exon 256650 257327 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256650 257327 292 + . alignment_id 8 ; Query gi|805766347|ref|XP_012135234.1| ; Align 256650 39 678 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766347|ref|XP_012135234.1| PREDICTED: uncharacterized protein LOC100876418 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 290 Query range: 40 -> 265 Target range: 284526 -> 285210 41 : SerIleLysTrpCysArgArgIleLeuThrIleIleAlaValTrpProGlnProProA : 60 |||:!!:!! ! !||| !!.!!|||! ! |||!.!|||||||||! !! ! SerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuC 284527 : AGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCT : 284584 61 : spPheThrLeuSerGlnLysCysPheTyrArgPheArgAsnValMetIlePheSerPh : 79 ! ! ||| !! !:!!||| ! !! ! ! !!! ! :!!!!:! !! !! !.! ysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLe 284585 : GCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCT : 284641 80 : eLeuSerTyrLeuSerValProCysIleValTyrMetIleValGlu<->ValGlnAsp : 97 .:!!.!!!:!|||! !||||||||| !:!!! !! :!::!!!!: ..! ||| uIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAsp 284642 : GATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGAT : 284698 98 : ValTyrAsnLysIleLysValPheGlyProThrSerPheCysValMetAlaLeuIleL : 117 :!! !!!..|||||||||:!!.!!|||||| !|||||||||:!!|||||| !|||| LeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleL 284699 : CTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCA : 284758 118 : ysTyrTyrValLeuIleValHisGluSerAspIleArgArgCysIleThrLeuIleGl : 136 ||||||||:!!|||||| !!.!! .!! ! ||| !!!:!|||:!:! ! !|||.. ysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIleAr 284759 : AGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCG : 284815 137 : uLeuSerTrpLys<->AspIleThrHis<-><->ProGluAspArgGluIleMetIle : 152 . !..!|||... :!!:!!||| |||:::||||||||||||! gAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMetArg 284816 : TGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTGAGG : 284872 153 : LysAsnAlaArgTyrGlySerGlnLeuIleAlaLeuCysThrPheIleMetTyrSerG : 172 ! !:!|||||| !||| !!...||| !!!!|||.!! !.!!|||||||||| AspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerG 284873 : GACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCG : 284932 173 : lyLeuThrPheTyrTyrValSerIleProIleGlySerGlyArgIleGluAspProGl : 191 || ! !|||||| !..! !!!:|||:!: !!!!!! !|||! ||| ! lyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGlu---IleIl 284933 : GAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAG---ATCAT : 284986 192 : uGluAsnValThrTyrIleProLeuMetPheProPheProLysValIleValAspThr : 210 !!:|||! !||| ! ! !!! ! !||||||.!! !:::! !:!!:!!||| !! eAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 284987 : CGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCG : 285043 211 : ArgPheSerProThrAsnGluIleIlePheSerPheGlnMetMetSerAspAlaThrL : 230 ||| !||||||:!! !||||||:!: ! !.!.||| :!!:!!! !..!: ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValI 285044 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTA : 285103 231 : euHisGlyValSerSerAlaSerCysSerLeuAlaSerMetLeuAlaAlaHisIleCy : 249 !!:!!..!|||!!! !!.!:!!||||||||||||:!!:!!!!!!.! !|||:!!|| leTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCy 285104 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTG : 285160 250 : sGlyGlnMetGluIleMetValAsnTrpMetLysHisLeuValAspGly : 265 |||||||.!...!|||:!:|||!.. !:!! ! ! |||||||||||| sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGly 285161 : TGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGA : 285210 vulgar: gi|805766347|ref|XP_012135234.1| 40 265 . KQ414889.1 284526 285210 + 290 M 54 162 G 0 3 M 46 138 G 0 3 M 4 12 G 0 6 M 44 132 G 1 0 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284527 285210 290 + . gene_id 9 ; sequence gi|805766347|ref|XP_012135234.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284527 285210 . + . KQ414889.1 exonerate:protein2genome:local exon 284527 285210 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284527 285210 290 + . alignment_id 9 ; Query gi|805766347|ref|XP_012135234.1| ; Align 284527 41 162 ; Align 284692 95 138 ; Align 284833 141 12 ; Align 284851 145 132 ; Align 284983 190 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766347|ref|XP_012135234.1| PREDICTED: uncharacterized protein LOC100876418 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 282 Query range: 38 -> 273 Target range: 262846 -> 263551 39 : AsnLeuSerIleLysTrpCysArgArgIleLeuThrIleIleAlaValTrpProGlnP : 58 :!!! !|||:!::!! !||| !!:!:|||! ! |||!.!!.!||||||! ! AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 59 : roProAspPheThrLeuSerGlnLysCysPheTyrArgPheArgAsnValMetIlePh : 77 !! !!....!!:!! !! !:!!::! !.!!!:: !.!! !! !|||:!: !!: erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 78 : eSerPheLeuSerTyrLeuSerValProCysIleValTyrMetIleValGluValGln : 96 !!!!.!!:!! !! ! ! !:!!|||! !|||:!!:!!!!::!!:!!|||!.!:!! rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 97 : AspValTyrAsnLysIleLysValPheGlyProThrSerPheCysValMetAlaLeuI : 116 :!! !!:!!! |||:!::!!|||.!!|||||| !.!! !! !!:!:!.!:!!| AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 117 : leLysTyrTyrValLeuIleValHisGluSerAspIleArgArgCysIleThrLeuIl : 135 ||!!.||| ! !|||:!::!!|||...!.!||||||!:! !!|||:!: !! !:! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 136 : eGluLeuSerTrpLysAspIleThrHisProGluAspArgGluIleMetIleLysAsn : 154 ::!! !..!||| !:!:|||... !||||||!:!...||||||:!:|||||| lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 155 : AlaArgTyrGlySerGlnLeuIleAlaLeuCysThrPheIleMetTyrSerGlyLeuT : 174 |||!:!|||||| !! ! :!! !|||! !|||.!!.!!.!!||| ! !!!.!!:!!! AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 175 : hrPheTyrTyrValSerIleProIleGlySerGlyArgIleGluAspProGluGluAs : 193 !! ! ! ! !:!! !! ! !!.!! !!!! ! !||||||||| !.!.|||!. etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 194 : nValThrTyrIleProLeuMetPheProPheProLysValIleValAspThrArgPhe : 212 ! !! ! ! !||| !! !||| ! !|||! !|||:!! ..! ! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 213 : SerProThrAsnGluIleIlePheSerPheGlnMetMetSerAspAlaThrLeuHisG : 232 !:!|||||||||||||||.!!.!!:!! |||.!.:!!|||! ! !! !:!! !! AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 233 : lyValSerSerAlaSerCysSerLeuAlaSerMetLeuAlaAlaHisIleCysGlyGl : 251 .!..!!!! !!.!:!!! !.!!:!!.!!:!!:!!!!!|||!.!||| !|||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 252 : nMetGluIleMetValAsnTrpMetLysHisLeuValAspGlyArgSerAspLeuPro : 270 |:!!.!.:!::!!:!!::!|||!!:! !.!.!!!|||:!! ! !!!!||| ! ! nLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsn 263484 : GTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAAT : 263540 271 : LysSerVal : 273 |||!:!:!! LysAsnLeu 263541 : AAGAATCTT : 263551 vulgar: gi|805766347|ref|XP_012135234.1| 38 273 . KQ414889.1 262846 263551 + 282 M 235 705 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 263551 282 + . gene_id 10 ; sequence gi|805766347|ref|XP_012135234.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262847 263551 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262847 263551 282 + . alignment_id 10 ; Query gi|805766347|ref|XP_012135234.1| ; Align 262847 39 705 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766347|ref|XP_012135234.1| PREDICTED: uncharacterized protein LOC100876418 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 274 Query range: 38 -> 273 Target range: 274380 -> 275085 39 : AsnLeuSerIleLysTrpCysArgArgIleLeuThrIleIleAlaValTrpProGlnP : 58 :!!! !|||:!::!!! ! !||| !!.!!|||! ! !|||!.!!.!|||||| ! AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuA 274381 : GACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAG : 274438 59 : roProAspPheThrLeuSerGlnLysCysPheTyrArgPheArgAsnValMetIlePh : 77 !! !! ! !||| !! !:!!::! !.!!! !.!... ::: :: laSerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTy 274439 : CCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctA : 274495 78 : eSerPheLeuSerTyrLeuSerValProCysIleValTyrMetIleValGluValGln : 96 !!!!|||:!! !! ! ! !:!!||| !!||| !!:!!!!:|||:!!! !! !:!! rCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGlu 274496 : CTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAA : 274552 97 : AspValTyrAsnLysIleLysValPheGlyProThrSerPheCysValMetAlaLeuI : 116 ..!:!!:!! |||:!:|||:!!.!!|||||| !.!! !!! !!!!:!.! !| SerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyI 274553 : AGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAA : 274612 117 : leLysTyrTyrValLeuIleValHisGluSerAspIleArgArgCysIleThrLeuIl : 135 ||!!.||| !..!|||:!::!!!.!...!.!!!:|||||| !!|||:!: !! !!! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 274613 : TTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACAT : 274669 136 : eGluLeuSerTrpLysAspIleThrHisProGluAspArgGluIleMetIleLysAsn : 154 ::!! !..!|||!:! !:!:|||...|||||||||!:!:!!:!:|||:!:|||||| tGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsn 274670 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAAC : 274726 155 : AlaArgTyrGlySerGlnLeuIleAlaLeuCysThrPheIleMetTyrSerGlyLeuT : 174 |||!:! !||| !! ! :!! !!!!|||.!! .!!||| ! !!!|||:!! AlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 274727 : GCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTC : 274786 175 : hrPheTyrTyrValSerIleProIleGlySerGlyArgIleGluAspProGluGluAs : 193 !! !|||! !|||! !! ! !!.!! !! ! !! !:!!:!!! !.!.|||!. euCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluTh 274787 : TCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGAC : 274843 194 : nValThrTyrIleProLeuMetPheProPheProLysValIleValAspThrArgPhe : 212 ! !||| ! !||| !! ! ! ! !||| !||||||! ..! ! rArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThr 274844 : CAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACG : 274900 213 : SerProThrAsnGluIleIlePheSerPheGlnMetMetSerAspAlaThrLeuHisG : 232 ||||||||||||||||||:!!.!!:!!! |||.!.:!!|||! !! !:!!:!!. SerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnS 274901 : AGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATT : 274960 233 : lyValSerSerAlaSerCysSerLeuAlaSerMetLeuAlaAlaHisIleCysGlyGl : 251 .! !:!! !!.!:!!! !|||||||||:!!:!!!!!||||||||| !! !||||| erSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGl 274961 : CGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCA : 275017 252 : nMetGluIleMetValAsnTrpMetLysHisLeuValAspGlyArgSerAspLeuPro : 270 |:!!...:!::!!:!!! |||!!:! .!.!!!|||:!! ! !!!!||| nLeuSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsn 275018 : GTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaat : 275074 271 : LysSerVal : 273 |||:::||| LysAsnVal 275075 : aaaaatgtt : 275085 vulgar: gi|805766347|ref|XP_012135234.1| 38 273 . KQ414889.1 274380 275085 + 274 M 235 705 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274381 275085 274 + . gene_id 11 ; sequence gi|805766347|ref|XP_012135234.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274381 275085 . + . KQ414889.1 exonerate:protein2genome:local exon 274381 275085 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274381 275085 274 + . alignment_id 11 ; Query gi|805766347|ref|XP_012135234.1| ; Align 274381 39 705 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766347|ref|XP_012135234.1| PREDICTED: uncharacterized protein LOC100876418 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 274 Query range: 40 -> 265 Target range: 278579 -> 279263 41 : SerIleLysTrpCysArgArgIleLeuThrIleIleAlaValTrpProGlnProProA : 60 |||:!!:!! ! !||| !!.!!|||! ! |||!.!|||||||||! !! ! SerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuC 278580 : AGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCT : 278637 61 : spPheThrLeuSerGlnLysCysPheTyrArgPheArgAsnValMetIlePheSerPh : 79 ! ! ||| !! !:!!||| ! !! ! ! !!! ! :!!!!:! !! !! !.! ysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLe 278638 : GCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCT : 278694 80 : eLeuSerTyrLeuSerValProCysIleValTyrMetIleValGlu<->ValGlnAsp : 97 .:!!.!!!:!|||! !||||||||| !:!!! !! :!::!!!!: ..! ||| uIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAsp 278695 : GATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGAT : 278751 98 : ValTyrAsnLysIleLysValPheGlyProThrSerPheCysValMetAlaLeuIleL : 117 :!! !!!..|||||||||:!!.!!|||||| !|||||||||..!|||||| !|||| LeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrIleL 278752 : CTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCA : 278811 118 : ysTyrTyrValLeuIleValHisGluSerAspIleArgArgCysIleThrLeuIleGl : 136 ||||||||:!!|||!!: !!.!! .!! ! ||| !!!:!|||:!:!.! !|||.. ysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIleAr 278812 : AATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCG : 278868 137 : uLeuSerTrpLys<-><-><->AspIleThrHisProGluAspArgGluIleMetIle : 152 . !..!|||... ... ! ... |||:::||||||||||||! gThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMetArg 278869 : TACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTGAGG : 278925 153 : LysAsnAlaArgTyrGlySerGlnLeuIleAlaLeuCysThrPheIleMetTyrSerG : 172 ! !:!|||||| !||| !!...||| !!!! !!.!! !.!!|||||||||| AspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerG 278926 : GACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCG : 278985 173 : lyLeuThrPheTyrTyrValSerIleProIleGlySerGlyArgIleGluAspProGl : 191 || !..!|||||| !!.! !!!:|||:!: !:!!! !|||! ||| ! lyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGlu---IleIl 278986 : GCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAG---ATCAT : 279039 192 : uGluAsnValThrTyrIleProLeuMetPheProPheProLysValIleValAspThr : 210 !!:|||! !||| ! ! !!! ! !||||||.!! !:::! !:!!:!!||| !! eAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 279040 : CGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCG : 279096 211 : ArgPheSerProThrAsnGluIleIlePheSerPheGlnMetMetSerAspAlaThrL : 230 ||| !||||||:!! !||||||:!: ! !.!.||| :!!:!!! !..!| ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValL 279097 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTT : 279156 231 : euHisGlyValSerSerAlaSerCysSerLeuAlaSerMetLeuAlaAlaHisIleCy : 249 ||:!!..!|||!!! !!.!:!!||||||||| !:!!:!!!!!!.! !|||:!!|| euTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCy 279157 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTG : 279213 250 : sGlyGlnMetGluIleMetValAsnTrpMetLysHisLeuValAspGly : 265 |||||||.!...!|||:!:|||!.. !:!! ! ! |||:!!|||||| sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGly 279214 : TGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGA : 279263 vulgar: gi|805766347|ref|XP_012135234.1| 40 265 . KQ414889.1 278579 279263 + 274 M 54 162 G 0 3 M 46 138 G 0 9 M 48 144 G 1 0 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278580 279263 274 + . gene_id 12 ; sequence gi|805766347|ref|XP_012135234.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278580 279263 . + . KQ414889.1 exonerate:protein2genome:local exon 278580 279263 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278580 279263 274 + . alignment_id 12 ; Query gi|805766347|ref|XP_012135234.1| ; Align 278580 41 162 ; Align 278745 95 138 ; Align 278892 141 144 ; Align 279036 190 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766347|ref|XP_012135234.1| PREDICTED: uncharacterized protein LOC100876418 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 236 Query range: 32 -> 254 Target range: 194150 -> 194807 33 : GluHisGluArgAsnValAsnLeuSerIleLysTrpCysArgArgIleLeuThrIleI : 52 .!.:!!:!! !:!!..!.!.! !:!!:!!::! ...!:! !:!!|||||| | AsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProI 194151 : AATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGA : 194208 53 : leAlaValTrpProGlnProProAspPheThrLeuSerGlnLysCysPheTyrArgPh : 71 ||!.!:!!||||||::! !!: !:!!||| !!.!.!:! ! ! leGlyIleTrpProArg------GluAspSerLeuArgAspArgValArgLeuPheAl 194209 : TCGGTATCTGGCCAAGG------GAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGC : 194259 72 : eArgAsnValMetIlePheSerPheLeuSerTyrLeuSerValProCysIleValTyr : 90 !!:!!.!! !:!!:!!|||:!!!!.:!!!!!!:!||| !|||||| !:!::!!||| aGlnThrGlyValValPheAlaLeuMetCysPheLeuLeuValProHisValIleTyr 194260 : TCAAACTGGCGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTAC : 194316 91 : MetIleValGluValGlnAspValTyrAsnLysIleLysValPheGlyProThrSerP : 110 ! ! !!!!: !:!!|||:!! !.. ! !!:||||||.!!!.! !! ! !| ThrTyrPheAspCysGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValP 194317 : ACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGT : 194376 111 : heCysValMetAlaLeuIleLysTyrTyrValLeuIleValHisGluSerAspIleAr : 129 || !!:!!:!!|||:!!||||||!:!!::..!:!!||||||:!!..!!.!!!:||||| heSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnArgLysGluIleAr 194377 : TCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAG : 194433 130 : gArgCysIleThrLeuIleGluLeuSerTrpLysAspIleThrHisProGluAspArg : 148 | !|||:!: ! !!!:||| !..!!::!:!|||:!: ! ! !||||||||| gPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCysGluGluAspArg 194434 : ATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGA : 194490 149 : GluIleMetIleLysAsnAlaArgTyrGlySerGlnLeuIleAlaLeuCysThrPheI : 168 :!!:!:|||! !!. !|||!:! !||| !! !!!! !.!!|||! ! ! : GlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyL 194491 : CAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGAC : 194550 169 : leMetTyrSerGlyLeuThrPheTyrTyrValSerIleProIleGlySerGlyArgIl : 187 !! |||.!!||| ! ! |||:!!:!!! !:!!|||:!: !|||! !||||| euSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluArgIl 194551 : TTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGAT : 194607 188 : eGluAspProGluGluAsnValThrTyrIleProLeuMetPheProPheProLysVal : 206 |! !|||!!:||| !||| ! ||||||||| !:! ! ! ! ! ||| eVal---LysGluAspAsnSerThrGlnIleProLeuProTyrLeuSerAsnTyrVal 194608 : TGTC---AAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTT : 194661 207 : IleValAspThrArgPheSerProThrAsnGluIleIlePheSerPheGlnMetMetS : 226 .!! !!! ! !..! !||||||! ! !!||||||! !||| !! |||!!::!!! PhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerGlnIleLeuI 194662 : TTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGA : 194721 227 : erAspAlaThrLeuHisGlyValSerSerAlaSerCysSerLeuAlaSerMetLeuAl : 245 !..!::!! !:!! ..!..!!:!!!!!.!! !! !||||||!.!:!!! :!! leSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIl 194722 : TTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTAT : 194778 246 : aAlaHisIleCysGlyGlnMetGluIle : 254 ! !||| !|||||| !.!.|||:!: eMetHisCysCysGlyLeuPheGluVal 194779 : TATGCATTGCTGTGGCTTGTTCGAAGTG : 194807 vulgar: gi|805766347|ref|XP_012135234.1| 32 254 . KQ414889.1 194150 194807 + 236 M 25 75 G 2 0 M 129 387 G 1 0 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194151 194807 236 + . gene_id 13 ; sequence gi|805766347|ref|XP_012135234.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194151 194807 . + . KQ414889.1 exonerate:protein2genome:local exon 194151 194807 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 194151 194807 236 + . alignment_id 13 ; Query gi|805766347|ref|XP_012135234.1| ; Align 194151 33 75 ; Align 194226 60 387 ; Align 194613 190 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766347|ref|XP_012135234.1| PREDICTED: uncharacterized protein LOC100876418 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 231 Query range: 31 -> 219 Target range: 294663 -> 295227 32 : AspGluHisGluArgAsnValAsnLeuSerIleLysTrpCysArgArgIleLeuThrI : 51 ||| :!!..!!.!:!!||| !|||:!!|||!::|||||||||:!:|||! ! AspThrAsnArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysP 294664 : GATACTAACAGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAAC : 294721 52 : leIleAlaValTrpProGlnProProAspPheThrLeuSer<->GlnLysCysPheTy : 69 |||!.!:!!||||||! ! !..! !||| !!.! .!.||| !.!!! roIleGlyLeuTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSe 294722 : CGATCGGTCTTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTC : 294778 70 : rArgPheArgAsnValMetIlePheSerPheLeuSerTyrLeuSerValProCysIle : 88 ! !.!!! !! !!.! ! ! ! ! !:!! !!:!:!!! !||||||||| ! rIleIleLeuIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGly 294779 : GATAATTCTGATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGA : 294835 89 : ValTyrMetIleValGluValGlnAspValTyrAsnLysIleLysValPheGlyProT : 108 !!:! :!! !!.!.|||::::::||| |||!!:|||:!!.!.||||||. TyrPheCysValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProV 294836 : TACTTCTGTGTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGG : 294895 109 : hrSerPheCysValMetAlaLeuIleLysTyrTyrValLeuIleValHisGluSerAs : 127 .! !!:!! !:!!:!::!!:!!:!!!:!||| ! !|||:!!:!! ! ! !!! alLeuTyrSerMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAl 294896 : TACTATACTCTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGC : 294952 128 : pIleArgArgCysIleThrLeuIleGluLeuSerTrpLysAspIleThrHisProGlu : 146 .!!!:!!.!|||||| ! !|||||| !..!|||||| ||| !:!!|||||| aPheLysHisCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGlu 294953 : GTTCAAGCATTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAA : 295009 147 : AspArgGluIleMetIleLysAsnAlaArgTyrGlySerGlnLeuIleAlaLeuCysT : 166 !!|||! !||||||||||||||||||! ! ! !..!::!:!!! !!.! !! !| HisArgAlaIleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheT 295010 : CACCGAGCGATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTA : 295069 167 : hrPheIleMetTyrSerGlyLeuThrPheTyrTyrValSerIleProIleGlySerGl : 185 ||.!!|||!!:||||||..! !..!! |||:!!!.!! !:::|||... |||.. hrIleIleIleTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAs 295070 : CTATTATAATCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaa : 295126 186 : yArgIleGluAspProGluGluAsnValThrTyrIleProLeuMetPheProPhePro : 204 . :!:|||:!! !:!!.!.||| ||| ! ! !!||| .!!||| ! ! nAlaLeuGluAsnLysLysAsnAsn---ThrIleArgAlaLeuProIleProGlyTyr 295127 : cgctTTGGAGAACAAGAAGAATAAT---ACGATTCGTGCGTTACCAATTCCTGGCTAC : 295180 205 : LysValIleValAspThrArgPheSerProThrAsnGluIleIle : 219 :!!:!!.!!||||||.!! !! !||||||||| !!||||||||| GluLeuPheValAspAlaTyrSerSerProThrTyrGluIleIle 295181 : GAGTTATTCGTAGACGCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: gi|805766347|ref|XP_012135234.1| 31 219 . KQ414889.1 294663 295227 + 231 M 33 99 G 0 3 M 129 387 G 1 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294664 295227 231 + . gene_id 14 ; sequence gi|805766347|ref|XP_012135234.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294664 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294664 295227 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294664 295227 231 + . alignment_id 14 ; Query gi|805766347|ref|XP_012135234.1| ; Align 294664 32 99 ; Align 294766 65 387 ; Align 295153 195 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766347|ref|XP_012135234.1| PREDICTED: uncharacterized protein LOC100876418 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 199 Query range: 196 -> 271 Target range: 202682 -> 202907 197 : IleProLeuMetPheProPheProLysValIleValAspThrArgPheSerProThrA : 216 :!! !:!!! !||| !!||| !! ! !!|||:!!|||..!|||!:!||||||..!| LeuSerValThrPheSerPheSerGlyPheIleIleAspValArgTyrSerProValA 202683 : CTTAGTGTGACGTTCTCCTTCTCAGGATTTATCATTGATGTTAGATACAGTCCTGTGA : 202740 217 : snGluIleIlePheSerPheGlnMetMetSerAspAlaThrLeuHisGlyValSerSe : 235 ||||||||.!!||||||.!!!:!!!::!::!!! ! ! !:!!|||||||||!!! snGluIlePhePheSerIleArgIleValAlaValIleLeuIleHisGlyValThrVa 202741 : ACGAGATCTTCTTCTCGATTCGAATCGTAGCTGTCATCCTAATTCACGGTGTCACTGT : 202797 236 : rAlaSerCysSerLeuAlaSerMetLeuAlaAlaHisIleCysGlyGlnMetGluIle : 254 !!.!:!!|||!!!|||.!!:!!:!!!!!|||!.!||| !||||||||||||!!::!! lGlyAlaCysCysLeuThrAlaLeuPheAlaValHisAspCysGlyGlnMetAspVal 202798 : AGGAGCTTGTTGCTTGACAGCGTTGTTTGCGGTTCACGATTGCGGCCAGATGGACGTT : 202854 255 : MetValAsnTrpMetLysHisLeuValAspGlyArgSerAspLeuProLys : 271 :!!:!! !|||:!!:!!||||||:!!|||||||||||||||:!! !||| LeuMetAlaTrpLeuGluHisLeuMetAspGlyArgSerAspMetSerLys 202855 : TTGATGGCCTGGCTGGAACATTTGATGGATGGTCGTTCGGATATGAGTAAA : 202907 vulgar: gi|805766347|ref|XP_012135234.1| 196 271 . KQ414889.1 202682 202907 + 199 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202683 202907 199 + . gene_id 15 ; sequence gi|805766347|ref|XP_012135234.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202683 202907 . + . KQ414889.1 exonerate:protein2genome:local exon 202683 202907 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202683 202907 199 + . alignment_id 15 ; Query gi|805766347|ref|XP_012135234.1| ; Align 202683 197 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766347|ref|XP_012135234.1| PREDICTED: uncharacterized protein LOC100876418 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 190 -> 264 Target range: 300183 -> 300405 191 : GluGluAsnValThrTyrIleProLeuMetPheProPheProLysValIleValAspT : 210 ..!|||||| !||||||! !|||||| !:!||| ! ! ! !.!!:!!|||| ArgGluAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspT 300184 : AGGGAGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATA : 300241 211 : hrArgPheSerProThrAsnGluIleIlePheSerPheGlnMetMetSerAspAlaTh : 229 ||!:! !||||||||| !!||||||:::||| |||... .!.:!!! !! hrGlnThrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIl 300242 : CACAAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGAT : 300298 230 : rLeuHisGlyValSerSerAlaSerCysSerLeuAlaSerMetLeuAlaAlaHisIle : 248 !:!!:!!..!|||!!!!!!|||:!!! !|||||||||:!!!!:!!!!.!.!!|||||| eMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIle 300299 : CATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATC : 300355 249 : CysGlyGlnMetGluIleMetValAsnTrpMetLysHisLeuValAsp : 264 |||||||||!!::!!|||..!:!! ! :!!:!! !!||||||!!: CysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGlu 300356 : TGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAG : 300405 vulgar: gi|805766347|ref|XP_012135234.1| 190 264 . KQ414889.1 300183 300405 + 148 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300184 300405 148 + . gene_id 16 ; sequence gi|805766347|ref|XP_012135234.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 300184 300405 . + . KQ414889.1 exonerate:protein2genome:local exon 300184 300405 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300184 300405 148 + . alignment_id 16 ; Query gi|805766347|ref|XP_012135234.1| ; Align 300184 191 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766347|ref|XP_012135234.1| PREDICTED: uncharacterized protein LOC100876418 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 32 -> 136 Target range: 299668 -> 299983 33 : GluHisGluArgAsnValAsnLeuSerIleLysTrpCysArgArgIleLeuThrIleI : 52 .!.:!!:!!!.!:!!:!!:!!! !!!!:!::!! !|||!:! !!:!:|||! ! !| HisTyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProI 299669 : CATTACCAAAATGACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTA : 299726 53 : leAlaValTrpProGlnProProAspPheThrLeuSerGlnLysCysPheTyrArgPh : 71 ||!.!||||||! ! !! ! !.!. !:!! !!.!! !:!! !.!! ! !.! leGlyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuValSerIl 299727 : TCGGAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGAT : 299783 72 : eArgAsnValMetIle<->PheSerPheLeuSerTyrLeuSerValProCysIleVal : 89 ! ! !:!!! ||| |||||| !|||! !!:!:!! !:!!|||! ! ! ! eValLeuMetThrIleCysPheSerSerLeuPhePheIleValLeuProSerGlyHis 299784 : CGTTCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCAT : 299840 90 : TyrMetIleValGluValGlnAspValTyrAsnLysIleLysValPheGlyProThrS : 109 |||!!:.!! !!! !! !:!!..!:!!:!! !|||:!:|||||||||||||||..!. TyrIlePhePheAlaGluLysSerIleHisValLysValLysValPheGlyProValG 299841 : TACATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTG : 299900 110 : erPheCysValMetAlaLeuIleLysTyrTyrValLeuIleValHisGluSerAspIl : 128 !!||||||:!! :!!:!!:!!||||||! ! !||| !:!!:!!! .!!! .! lyPheCysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPh 299901 : GTTTTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTT : 299957 129 : eArgArgCysIleThrLeuIleGlu : 136 !..!||||||||| !! !:!!||| eGluArgCysIleGlnHisValGlu 299958 : CGAACGATGCATCCAACACGTCGAG : 299983 vulgar: gi|805766347|ref|XP_012135234.1| 32 136 . KQ414889.1 299668 299983 + 110 M 44 132 G 0 3 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299669 299983 110 + . gene_id 17 ; sequence gi|805766347|ref|XP_012135234.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299669 299983 . + . KQ414889.1 exonerate:protein2genome:local exon 299669 299983 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299669 299983 110 + . alignment_id 17 ; Query gi|805766347|ref|XP_012135234.1| ; Align 299669 33 132 ; Align 299804 77 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805798911|ref|XP_012143985.1| PREDICTED: uncharacterized protein LOC100876205 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 347 -> 397 Target range: 301886 -> 302036 348 : IleGlyTyrSerLeuTyrSerCysSerTrpTyrSerLeuProAlaAsnValAlaLysA : 367 ||||||! :!!! !|||..! !..!||||||!:!|||||||||!!. !||| ! : IleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrA 301887 : ATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACG : 301944 368 : snIleValLeuValIleLeuArgAlaGlnIleProValHisLeuThrAlaGlyLysPh : 386 !!:!!:!!|||:!!! !:!!! !:!!||| !||| ! ! |||||||||||||||.! spLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGlyLysIl 301945 : ATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAAT : 302001 387 : ePheValValAsnLeuGluThrPheMetSerIle : 397 ..!!! !:!!::!|||.!.||||||! |||:!! eIleAspLeuSerLeuAsnThrPheSerSerVal 302002 : AATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: gi|805798911|ref|XP_012143985.1| 347 397 . KQ414889.1 301886 302036 + 106 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301887 302036 106 + . gene_id 1 ; sequence gi|805798911|ref|XP_012143985.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301887 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301887 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301887 302036 106 + . alignment_id 1 ; Query gi|805798911|ref|XP_012143985.1| ; Align 301887 348 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805798911|ref|XP_012143985.1| PREDICTED: uncharacterized protein LOC100876205 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 343 -> 397 Target range: 258462 -> 258624 344 : GlnMetAspGlyIleGlyTyrSerLeuTyrSerCysSerTrpTyrSerLeuProAlaA : 363 ||| ! !:!!||| !! !:!!|||! ! ..!||||||! !||||||! !! GlnCysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspL 258463 : CAGTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACA : 258520 364 : snValAlaLysAsnIleValLeuValIleLeuArgAlaGlnIleProValHisLeuTh : 382 !. ! ! :!!:!!:!!||||||||| !|||:!!...:!: !|||!!.:!!|| ysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleTh 258521 : AAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCAC : 258577 383 : rAlaGlyLysPhePheValValAsnLeuGluThrPheMetSerIle : 397 |||||||||||||||| ::!::!:!! ! ||||||! ..!:!: rAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAspVal 258578 : CGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATGTG : 258624 vulgar: gi|805798911|ref|XP_012143985.1| 343 397 . KQ414889.1 258462 258624 + 104 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258463 258624 104 + . gene_id 2 ; sequence gi|805798911|ref|XP_012143985.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 258463 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258463 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258463 258624 104 + . alignment_id 2 ; Query gi|805798911|ref|XP_012143985.1| ; Align 258463 344 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805798911|ref|XP_012143985.1| PREDICTED: uncharacterized protein LOC100876205 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 342 -> 394 Target range: 234982 -> 235138 343 : SerGlnMetAspGlyIleGlyTyrSerLeuTyrSerCysSerTrpTyrSerLeuProA : 362 ..!||| ! !:!!||| ! !.!:!!|||! ! !..!|||||| !!|||||| GlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProH 234983 : CAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTC : 235040 363 : laAsnValAlaLysAsnIleValLeuValIleLeuArgAlaGlnIleProValHisLe : 381 !!!...!||| ..!:!:|||:!!:!!|||! !|||:!!...!!: !:!! ! :! isLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIl 235041 : ATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAAT : 235097 382 : uThrAlaGlyLysPhePheValValAsnLeuGluThrPhe : 394 !|||||||||||||||.!. !:!!::!:!!! !|||||| eThrAlaGlyLysPheLeuGlnMetSerValAlaThrPhe 235098 : CACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTT : 235138 vulgar: gi|805798911|ref|XP_012143985.1| 342 394 . KQ414889.1 234982 235138 + 101 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234983 235138 101 + . gene_id 3 ; sequence gi|805798911|ref|XP_012143985.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234983 235138 . + . KQ414889.1 exonerate:protein2genome:local exon 234983 235138 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234983 235138 101 + . alignment_id 3 ; Query gi|805798911|ref|XP_012143985.1| ; Align 234983 343 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 837 Query range: 8 -> 362 Target range: 256625 -> 258738 9 : GlnThrAspProGluIleLeuSerAspTyrSerLeuGlnLeuAsnArgTrpLeuLeuL : 28 :!!|||:!! !:!!! !! !||||||||||||||||||||||||||||||!!!|||| LysThrAsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuL 256626 : AAGACGAATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGA : 256683 29 : ysSerIleGlyAlaTrpProLysSerSerSerThrThrLysThrGluLeuThrValSe : 47 || !!||||||||||||||| |||||||||||||||! !|||! !!.!||||| ysProIleGlyAlaTrpProProSerSerSerThrThrThrLeuGluArgAsnValSe 256684 : AACCTATAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTC : 256740 48 : rLeuIleLeuThrValIleGlyTyrThrThrIleLeuIleThrValIleProAlaIle : 66 |:!!:!!|||!.!:!!:!! !!||| !:!!||||||.!!|||:!!||||||..!:!: rIleValLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIleProCysLeu 256741 : GATCGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGTTTG : 256797 67 : LeuGlnLeuIleLeuGlyAspIleAspLeuHisThrLysValValLeuValGlyProM : 86 |||!!.:!!.!!|||! !||| !..!!!!:!: |||||| ||||||| LeuHisValPheLeuAspAspAspSerPheTyrMetLysValLysAsnPheGlyProM 256798 : CTCCATGTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtCCTA : 256857 87 : etSerHisTrpCysLeuGlyGlyIleGlyTyrThrMetLeuLeuMetHisAspGluGl : 105 ||||||||||| !:!!.!! !! !..!||||||:!!||||||:!:!!.! :!!!! etSerHisTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAs 256858 : TGAGCCATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGA : 256914 106 : uIleLysTrpCysValGluArgValLysAsnAspTrpArgSerIleMetAsnProGlu : 124 :|||:::!::|||||||||!.!:!!:!!!..|||||||||! !:!:! !!.. !:!! pIleArgTyrCysValGluHisIleGluThrAspTrpArgMetValArgArgGluLys 256915 : CATACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAG : 256971 125 : MetGlnGlnThrMetIleLysAsnAlaLysLeuSerArgTyrValValSerLeuCysA : 144 ||||||..!|||!!:|||||||||!:!!!!.!!|||||||||!.!!!!!!!|||| AspGlnGlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheCysA 256972 : GATCAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCG : 257031 145 : laIleLeuMetGlnSerAlaValLeuGlyPheGlyValGluLysAlaLeuSerThrGl : 163 || !:!!|||||||||!.!|||... ||| |||..!..!||||||!:!|||:! laAlaIleMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAsnThrGl 257032 : CAGCTATCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACACGGA : 257088 164 : nValIleThrValGlyAsnGluThrLysValValHisMetLeuProCysAlaThrTyr : 182 !:!!||| !|||||||||||||||! !:!!|||!..:!!|||||| !.!!..!||| uIleIleHisValGlyAsnGluThrThrIleValArgValLeuProValThrValTyr 257089 : GATAATTCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTGTAC : 257145 183 : ArgLysLeuLeuProValAspThrSerProThrPheGluIleValLeuValAlaGlnL : 202 !:!||||||||| !|||||| !||||||||| !|||||||||:!! !! !||| LysLysLeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheMetGlnT 257146 : AAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAA : 257205 203 : euValSerGlyPhePheValAsnGlyThrPheAlaGlyAlaPheSerLeuAlaSerAl : 221 ! !|||..!.!!.!.!.!!.! !!:! !.!.!! !||||||||||||:!!!. hrTrpSerSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAlaAlaVa 257206 : CTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGT : 257262 222 : aPheThrLeuHisAlaTyrSerGlnLeuAsnIleLeuAlaThrTrpIleThrGluAla : 240 !|||.!! !|||||||||.!!||||||!.!:!:||| !:!!|||||||||||| ! lPheAlaThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGluPhe 257263 : TTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTT : 257319 241 : ValAspGlnSerSerLeuAsnAspValGlyAlaIleValArgLysHisLeuAlaIleL : 260 |||:!!:!!|||!!! !...::: !!:!:!! !!.!|||: ValAsnGluSerArgAsnArgGluLysThrPheProPheLysGlnIleGlyValIleV 257320 : GTGAATGAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGATTG : 257379 261 : euSerPheIleSerArg >>>> Target Intron 1 >>>> IleGluAlaIle : 269 !!..! ! !! !||| 97 bp ||||||! !:!: alGluHisHisLeuArg++ +-IleGluGluVal 257380 : TGGAGCATCATTTAAGAgt.........................atATCGAGGAAGTG : 257503 270 : MetAsnGluIleCysPheMetGluLeuPheLysCysThrPheSerIleCysLeuLeuG : 289 ||||||..!|||||||||:!:|||||||||!:!||||||.!.:!!||||||:!!|||| MetAsnArgIleCysPheLeuGluLeuPheArgCysThrLeuAlaIleCysMetLeuG 257504 : ATGAACCGAATATGTTTTTTAGAGTTGTTTAGATGCACGCTGGCTATATGCATGCTGG : 257563 290 : lyPheAsnIleIleLeu >>>> Target Intron 2 >>>> CysAsnLysIle : 298 ||!:! !!|||:!! ! 885 bp |||!!.|||:!! lyTyrTyrIleLeuAla++ ++CysLysLysVal 257564 : GATACTACATTCTTGCGgt.........................agTGCAAGAAAGTT : 258475 299 : GlyGluAlaIleTyrMetSerAsnTrpTyrTyrLeuAlaAspLysAspIleHisAsnL : 318 |||!!:!.!:!!||||||!!!:!!|||||||||||| !!|||||| |||! !:!!| GlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspL 258476 : GGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATT : 258535 319 : euMetMetIleIleSerArgSerCysValGluThrLysIleThrAlaGlyLysIleVa : 337 ||!!::!!:!!|||:!!|||||| !!|||! ..!:!!|||||||||||||||... euIleLeuValIleAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePh 258536 : TAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctt : 258592 338 : lHisMetSerPheTyrThrLeuAlaSer >>>> Target Intron 3 >>>> V : 347 |||||||||.!!||||||!!!::!..! 69 bp | eHisMetSerIleTyrThrPheSerAsp++ ++V 258593 : tcacatGTCCATTTACACATTCAGCGATgt.........................agG : 258691 348 : alIleLysSerSerPheAlaTyrThrAsnIleLeuLeuGlnThrThr : 362 ||||||||!!!|||||||||||| !|||:!!|||! !|||..!:!! alIleLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnValSer 258692 : TAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGTATCG : 258738 vulgar: gi|805766376|ref|XP_012135244.1| 8 362 . KQ414889.1 256625 258738 + 837 M 257 771 5 0 2 I 0 93 3 0 2 M 29 87 5 0 2 I 0 881 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256626 258738 837 + . gene_id 1 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256626 257396 . + . KQ414889.1 exonerate:protein2genome:local exon 256626 257396 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257397 257398 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257397 257493 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257492 257493 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 257494 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257494 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258465 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256626 258738 837 + . alignment_id 1 ; Query gi|805766376|ref|XP_012135244.1| ; Align 256626 9 771 ; Align 257494 266 87 ; Align 258466 295 156 ; Align 258691 347 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 750 Query range: 0 -> 293 Target range: 266586 -> 267555 1 : MetHisAspLysProIleThrGluGlnThrAspProGluIleLeuSerAspTyrSerL : 20 ||| !:!!:!! !!:!:..! :!!.!!:!!! !.!.! !|||||||||||||||| MetAlaAsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerL 266587 : ATGGCTAACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCC : 266644 21 : euGlnLeuAsnArgTrpLeuLeuLysSerIleGlyAlaTrpProLysSerSerSerTh : 39 |||||||||||||||||!!!|||||| !!||||||||||||||| !! !||| !|| euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuTh 266645 : TGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCAC : 266701 40 : rThrLysThrGluLeuThrValSerLeuIleLeuThrValIleGlyTyrThrThrIle : 58 |:!!||| !|||! !! !||||||! ! !|||! !|||||| !!||| !:!!||| rSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIle 266702 : ATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATA : 266758 59 : LeuIleThrValIleProAlaIleLeuGlnLeuIleLeuGlyAspIleAspLeuHisT : 78 |||.!!||||||||||||..!:!:!!!!!.|||:!!|||! !||| ..!:!!!.!| LeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgT 266759 : CTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTA : 266818 79 : hrLysValValLeuValGlyProMetSerHisTrpCysLeuGlyGlyIleGlyTyrTh : 97 |||||||| !:!! !!||||||:!!|||||||||! !:!!|||||||||..!||||| hrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrTh 266819 : CGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACAC : 266875 98 : rMetLeuLeuMetHisAspGluGluIleLysTrpCysValGluArgValLysAsnAsp : 116 |! ||||||:!:!.!..!:!!||||||::: ! |||||||||!.!:!!:!!!..||| rThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAsp 266876 : CACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGAT : 266932 117 : TrpArgSerIleMetAsnProGluMetGlnGlnThrMetIleLysAsnAlaLysLeuS : 136 ||||||! !:!:! !..|||||| :!!|||..!|||:!:|||||||||!:!:!!. TrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleG 266933 : TGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCG : 266992 137 : erArgTyrValValSerLeuCysAlaIleLeuMetGlnSerAlaValLeuGlyPheGl : 155 !!||||||:!!!.!! !!!!|||||| !!!||||||!!!!.!|||||||||!:! ! lyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCy 266993 : GTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTG : 267049 156 : yValGluLysAlaLeuSerThrGlnValIleThrValGlyAsnGluThrLysValVal : 174 !||| !! !|||!!!!!!! !|||..!:!: !|||||||||||||||!:!:!!||| sValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleVal 267050 : TGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTA : 267106 175 : HisMetLeuProCysAlaThrTyrArgLysLeuLeuProValAspThrSerProThrP : 194 |||:!!||||||||||||..!|||!:!|||:!!:!! !!|||||||||||||||||| HisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrA 267107 : CATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGA : 267166 195 : heGluIleValLeuValAlaGlnLeuValSerGlyPhePheValAsnGlyThrPheAl : 213 !|||||||||||||||:!!|||!!!||||||||||||.!!||||||..!!:! !!!. snGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValVa 267167 : ACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGT : 267223 214 : aGlyAlaPheSerLeuAlaSerAlaPheThrLeuHisAlaTyrSerGlnLeuAsnIle : 232 !||||||||||||||||||:!!!.!|||.!! !||||||! !.!!||||||!:!:!: lGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerVal 267224 : CGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTG : 267280 233 : LeuAlaThrTrpIleThrGluAlaValAspGlnSerSerLeuAsnAspValGly{Al} : 251 ||| !! !||||||! !||| !|||:!!!:!|||!!! !!:!:!! !..!{!.} LeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsn{Va} 267281 : CTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAAC{GT} : 267337 252 : >>>> Target Intron 1 >>>> {a}IleValArgLysHisLeuAlaIleLe : 260 93 bp {!}:!::!! !..!|||:!!! ! ! -+ ++{l}LeuIle***SerHisValAsp---Cy 267338 : tt.........................ag{A}TTGATCTAATCGCATGTTGAT---TG : 267454 261 : uSerPheIleSerArgIleGluAlaIleMetAsnGluIleCysPheMetGluLeuPhe : 279 !|||||||||:!!|||||||||::!:!!|||!:!|||||||||||||||||||||||| sSerPheIleAlaArgIleGluSerValMetSerGluIleCysPheMetGluLeuPhe 267455 : CAGCTTCATAGCACGTATCGAAAGTGTAATGAGCGAAATTTGCTTCATGGAGTTGTTC : 267511 280 : LysCysThrPheSerIleCysLeuLeuGlyPheAsnIleIle : 293 |||||||||.!...!||||||:!!|||.!!!:! !!|||:!! LysCysThrMetAspIleCysValLeuSerTyrTyrIleLeu 267512 : AAGTGTACTATGGATATATGCGTGCTTAGCTATTATATCCTT : 267555 vulgar: gi|805766376|ref|XP_012135244.1| 0 293 . KQ414889.1 266586 267555 + 750 M 250 750 S 0 2 5 0 2 I 0 89 3 0 2 S 1 1 M 7 21 G 1 0 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266587 267555 750 + . gene_id 2 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266587 267338 . + . KQ414889.1 exonerate:protein2genome:local exon 266587 267338 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267339 267340 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 267339 267431 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267430 267431 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267432 267555 . + . KQ414889.1 exonerate:protein2genome:local exon 267432 267555 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 266587 267555 750 + . alignment_id 2 ; Query gi|805766376|ref|XP_012135244.1| ; Align 266587 1 750 ; Align 267433 252 21 ; Align 267454 260 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 669 Query range: 12 -> 244 Target range: 274368 -> 275064 13 : GluIleLeuSerAspTyrSerLeuGlnLeuAsnArgTrpLeuLeuLysSerIleGlyA : 32 !!:! !|||||||||||||||||||||||||||||||||!!!|||||| !!||||||| AspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyA 274369 : GACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCG : 274426 33 : laTrpProLysSerSerSerThrThrLysThrGluLeuThrValSerLeuIleLeuTh : 51 |||||||| !:!!||| !!||||||||| !|||! !! !:!!|||! !:::||| laTrpProLeuAlaSerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIl 274427 : CGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaat : 274483 52 : rValIleGlyTyrThrThrIleLeuIleThrValIleProAlaIleLeuGlnLeuIle : 70 ::: ||| ! !|||||| !||||||||||||::!|||!!!!!.:!!||| ePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIlePheHisIleIle 274484 : cttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATA : 274540 71 : LeuGlyAspIleAspLeuHisThrLysValValLeuValGlyProMetSerHisTrpC : 90 |||! !||| !..!|||||| !|||:!! !|||:!!||||||:!:.!!||||||! LeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpP 274541 : CTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGT : 274600 91 : ysLeuGlyGlyIleGlyTyrThrMetLeuLeuMetHisAspGluGluIleLysTrpCy : 109 !:!!|||||||||..!||||||! !||||||:!:!.!..!:!!||||||::: ! || heIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCy 274601 : TCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTG : 274657 110 : sValGluArgValLysAsnAspTrpArgSerIleMetAsnProGluMetGlnGlnThr : 128 |||||||!.!:!!:!!!..|||||||||! !:!:! !..|||||| ||||||..! sValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnVal 274658 : CGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTG : 274714 129 : MetIleLysAsnAlaLysLeuSerArgTyrValValSerLeuCysAlaIleLeuMetG : 148 |||:!:||||||||||||:!!.!!|||||||||!.!! !!!!|||||| !!!|||| MetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetG 274715 : ATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGC : 274774 149 : lnSerAlaValLeuGlyPheGlyValGluLysAlaLeuSerThrGlnValIleThrVa : 167 ||!!!!.!|||||| !!!:! !!||| !! !|||!!!!!!! !|||..!:!! !|| lnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnVa 274775 : AATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGT : 274831 168 : lGlyAsnGluThrLysValValHisMetLeuProCysAlaThrTyrArgLysLeuLeu : 186 |||||||||||||!:!..!|||||||||||||||||| !.!!|||!:!|||:!!:!! lGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLysLysIleVal 274832 : AGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTC : 274888 187 : ProValAspThrSerProThrPheGluIleValLeuValAlaGlnLeuValSerGlyP : 206 !!|||||||||||||||||| !||||||||||||!.!:!!|||!!!|||||||||| AlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyP 274889 : GCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGAT : 274948 207 : hePheValAsnGlyThrPheAlaGlyAlaPheSerLeuAlaSerAlaPheThrLeuHi : 225 ||.!!||||||..!!:! !.!||||||||||||||||||:!!!.!|||.!! !|| heIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHi 274949 : TTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACA : 275005 226 : sAlaTyrSerGlnLeuAsnIleLeuAlaThrTrpIleThrGluAlaValAspGlnSer : 244 |||||||.!!||||||!:!:!:||| !! !|||||||||||| !|||:!!!!.||| sAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheValAsnHisSer 275006 : CGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCC : 275062 vulgar: gi|805766376|ref|XP_012135244.1| 12 244 . KQ414889.1 274368 275064 + 669 M 232 696 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274369 275064 669 + . gene_id 3 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274369 275064 . + . KQ414889.1 exonerate:protein2genome:local exon 274369 275064 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274369 275064 669 + . alignment_id 3 ; Query gi|805766376|ref|XP_012135244.1| ; Align 274369 13 696 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 665 Query range: 1 -> 353 Target range: 236804 -> 238805 2 : HisAspLysProIleThrGluGlnThrAspProGluIleLeuSerAspTyrSerLeuG : 21 :!!|||||| !!:!:..! !:!!! !:!! ! ! !|||||||||||||||| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuG 236805 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCC : 236862 22 : lnLeuAsnArgTrpLeuLeuLysSerIleGlyAlaTrpProLysSerSerSerThrTh : 40 ||! !||||||||| !:!!||||||||||||.!!||||||:!!! !|||||| lnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSer----- 236863 : AGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCG----- : 236916 41 : rLysThrGluLeuThrValSerLeuIleLeuThrValIleGlyTyrThrThrIleLeu : 59 !!. !||| !!.!:!!|||! !||||||!.!|||||| !!||||||.!!|||||| -AsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeu 236917 : -AACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTA : 236970 60 : IleThrValIleProAlaIleLeuGlnLeuIleLeuGlyAspIleAspLeuHisThrL : 79 .!!:!!:!!||||||..! |||!!.|||!!:|||! ! ! !!!!:!!|||| PheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrL 236971 : TTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGA : 237030 80 : ysValValLeuValGlyProMetSerHisTrpCysLeuGlyGlyIleGlyTyrThrMe : 98 ||||| !:!!:!!||| !!:!!||||||||| !!! !! !|||.!!|||||||| ysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMe 237031 : AAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCAT : 237087 99 : tLeuLeuMetHisAspGluGluIleLysTrpCysValGluArgValLysAsnAspTrp : 117 |||||||:!!!.. !:!! |||::: ! ! !!.!.!.!:!!:!!!.!|||||| tLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrp 237088 : GCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGG : 237144 118 : ArgSerIleMetAsnProGluMetGlnGlnThrMetIleLysAsnAlaLysLeuSerA : 137 |||!!!! ... ||| ::::::...|||:!:||| !!||||||!!!|||| ArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerA 237145 : AGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTC : 237204 138 : rgTyrValValSerLeuCysAlaIleLeuMetGlnSerAlaValLeuGlyPheGlyVa : 156 |||||!.!!.!! !! !|||.!!|||!!!!!:!!..!!!.!:!!||||||!:! !!|| rgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysVa 237205 : GATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGT : 237261 157 : lGluLysAlaLeuSerThrGlnValIleThrValGlyAsnGluThrLysValValHis : 175 | !! !|||! !!!!|||..!|||:!!..!|||||||||:!!|||! !:!!:!!!.! lMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLeuArg 237262 : TATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGC : 237318 176 : MetLeuProCysAlaThrTyrArgLysLeuLeuProValAspThrSerProThrPheG : 195 :!!||||||! !!! !|||!:! !||||||||||||||||||!:! !!! ! !! ValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnA 237319 : GTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACG : 237378 196 : luIleValLeuValAlaGlnLeuValSerGlyPhePheValAsnGlyThrPheAlaGl : 214 !:||||||:!!:!!:!!|||!!!:!!|||||||||.!.!.!|||..!!:! !.! spIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSe 237379 : ACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAG : 237435 215 : yAlaPheSerLeuAlaSerAlaPheThrLeuHisAlaTyrSerGlnLeuAsnIleLeu : 233 !!.!.!.||||||.!!||||||.!.|||! !||||||! !.!!||||||!:!:!::!! rValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValVal 237436 : TGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTT : 237492 234 : AlaThrTrpIleThrGluAlaValAspGlnSerSerLeuAsn{A} >>>> Target : 248 ! !! !||| !!!: !|||..!:!!:!!!!!! !!..{|} 9 MetLeuSerIleGluAspPheValSerGluAlaArgArgArg{A}+- 237493 : ATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGA{G}gg........... : 237540 249 : Intron 1 >>>> {sp}ValGlyAlaIleValArgLysHisLeuAlaIleLeuSe : 261 2 bp {||} |||..!:!! !! !! !! !!.!! !! !|| -+{sp}---GlyCysValSerLeuIleValSerValAsnTyrSe 237541 : ..............tg{AT}---GGGTGTGTTTCTCTGATCGTTTCTGTTAATTACAG : 237665 262 : rPheIleSerArgIleGluAlaIleMetAsnGluIleCysPheMetGluLeuPheLys : 280 ||||||||||||||||||||||!!:||||||:!! ||||||:!!||||||.!.!:! rPheIleSerArgIleGluAlaMetMetAsnLysAlaCysPheLeuGluLeuMetArg 237666 : CTTCATATCGCGCATAGAGGCAATGATGAACAAAGCGTGTTTCCTGGAGTTAATGAGG : 237722 281 : CysThrPheSerIleCysLeuLeuGlyPheAsnIleIleLeu >>>> Target In : 295 |||! !.!.:!!:!!||| !||||||!:! !!|||.!!:!! 862 CysMetIleAlaValCysAlaLeuGlyTyrTyrIlePheMet++ 237723 : TGCATGATAGCTGTATGCGCACTTGGATATTATATATTCATGgt.............. : 237769 296 : tron 2 >>>> CysAsnLysIleGlyGluAlaIleTyrMetSerAsnTrpTyrTyr : 309 bp ||| |||:!!||||||!.!:!!||||||!!!:!!||||||||| ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyr 237770 : ...........agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTAT : 238671 310 : LeuAlaAspLysAspIleHisAsnLeuMetMetIleIleSerArgSerCysValGluT : 329 ||| !!.!.!:! |||! !:!!|||!!::!!||||||!.!|||||| !|||! . LeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValV 238672 : CTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCG : 238731 330 : hrLysIleThrAlaGlyLysIleValHisMetSerPheTyrThrLeuAlaSerValIl : 348 .!|||:!!||||||||||||:!!:!!|||||||||.!!||||||!!!!.!..!|||! alLysValThrAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSe 238732 : TTAAAGTCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAG : 238788 349 : eLysSerSerPheAla : 353 !:!!!!!!:!.!!||| rGluThrAsnLeuAla 238789 : TGAAACTAATCTTGCT : 238805 vulgar: gi|805766376|ref|XP_012135244.1| 1 353 . KQ414889.1 236804 238805 + 665 M 37 111 G 2 0 M 207 621 S 0 1 5 0 2 I 0 88 3 0 2 S 1 2 G 1 0 M 45 135 5 0 2 I 0 858 3 0 2 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236805 238805 665 + . gene_id 4 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 236805 237537 . + . KQ414889.1 exonerate:protein2genome:local exon 236805 237537 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 237538 237539 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local intron 237538 237629 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 237628 237629 . + . intron_id 0 ; splice_site "TG" KQ414889.1 exonerate:protein2genome:local cds 237630 237766 . + . KQ414889.1 exonerate:protein2genome:local exon 237630 237766 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 237767 237768 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 237767 238628 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 238627 238628 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238629 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238629 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 236805 238805 665 + . alignment_id 4 ; Query gi|805766376|ref|XP_012135244.1| ; Align 236805 2 111 ; Align 236916 41 621 ; Align 237632 250 135 ; Align 238629 295 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 634 Query range: 0 -> 244 Target range: 259721 -> 260453 1 : MetHisAspLysProIleThrGluGlnThrAspProGluIleLeuSerAspTyrSerL : 20 ||| :!!||| !!:!: !! !:!!|||..! ! ! !! !||||||||||||| MetThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerL 259722 : ATGACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCC : 259779 21 : euGlnLeuAsnArgTrpLeuLeuLysSerIleGlyAlaTrpProLysSerSerSerTh : 39 |||||!!!|||||||||!!!|||||| !!||||||||||||||| ||||||||||| euGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 259780 : TCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCAC : 259836 40 : rThrLysThrGluLeuThrValSerLeuIleLeuThrValIleGlyTyrThrThrIle : 58 ||||!:! !||| !! !:!!|||:!!||||||! ! !!||| !!|||!:!|||||| rThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIle 259837 : GACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATA : 259893 59 : LeuIleThrValIleProAlaIleLeuGlnLeuIleLeuGlyAspIleAspLeuHisT : 78 |||:!!|||:!!||||||..!:!!|||!!.:!!:!!|||! ! ! ..!|||:!!! LeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrM 259894 : CTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACA : 259953 79 : hrLysValValLeuValGlyProMetSerHisTrpCysLeuGlyGlyIleGlyTyrTh : 97 !|||..! !:!!:!!||||||:!:!!!||||||! !:!!||| !!|||..!||||| etLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrTh 259954 : TGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACAC : 260010 98 : rMetLeuLeuMetHisAspGluGluIleLysTrpCysValGluArgValLysAsnAsp : 116 |! !||||||:!!...! !..!!!:||| ! |||||||||!.!|||:!!|||||| rThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAsp 260011 : AACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGAT : 260067 117 : TrpArgSerIleMetAsnProGluMetGlnGlnThrMetIleLysAsnAlaLysLeuS : 136 ||||||! !|||! !!.. !:!! |||.!...!|||:!:!:! !!||||||!!!. TrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheG 260068 : TGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCG : 260127 137 : erArgTyrValValSerLeuCysAlaIleLeuMetGlnSerAlaValLeuGlyPheGl : 155 !!|||||||||!.!:!!! !|||||| !!!!:!!|||.!!!.!|||||| !!||| ! lyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCy 260128 : GCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTG : 260184 156 : yValGluLysAlaLeuSerThrGlnValIleThrValGlyAsnGluThrLysValVal : 174 !:!!! ! !!.!|||||||||:!!|||||| !|||||||||||||||!:!:!!||| sLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal 260185 : TTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTT : 260241 175 : HisMetLeuProCysAlaThrTyrArgLysLeuLeuProValAspThrSerProThrP : 194 |||:!!||||||||||||..!|||!:!:!!|||:!! !|||:!! !||||||! ! HisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetA 260242 : CATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGA : 260301 195 : heGluIleValLeuValAlaGlnLeuValSerGlyPhePheValAsnGlyThrPheAl : 213 !|||||||||||||||!.!|||!!!||||||||||||.!.||||||..!!:! !!. snGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrVa 260302 : ACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGT : 260358 214 : aGlyAlaPheSerLeuAlaSerAlaPheThrLeuHisAlaTyrSerGlnLeuAsnIle : 232 !||| !||||||||||||:!!!.!.!.||| !||||||! !.!!|||||||||:!: lGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnVal 260359 : TGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTG : 260415 233 : LeuAlaThrTrpIleThrGluAlaValAspGlnSer : 244 ||| ! !|||||||||||| !||||||:!!||| LeuMetGluTrpIleThrGluPheValAspGluSer 260416 : CTCATGGAATGGATCACGGAGTTTGTGGACGAGTCG : 260453 vulgar: gi|805766376|ref|XP_012135244.1| 0 244 . KQ414889.1 259721 260453 + 634 M 244 732 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259722 260453 634 + . gene_id 5 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259722 260453 . + . KQ414889.1 exonerate:protein2genome:local exon 259722 260453 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259722 260453 634 + . alignment_id 5 ; Query gi|805766376|ref|XP_012135244.1| ; Align 259722 1 732 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 594 Query range: 14 -> 244 Target range: 262840 -> 263530 15 : LeuSerAspTyrSerLeuGlnLeuAsnArgTrpLeuLeuLysSerIleGlyAlaTrpP : 34 |||||||||||||||||||||:!!|||||||||||||||||| !!||||||||||||| LeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpP 262841 : CTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGC : 262898 35 : roLysSerSerSerThrThrLysThrGluLeuThrValSerLeuIleLeuThrValIl : 53 || !|||:!!|||! !:!!!:!! !|||! !! !:!!!!!!!!:!!|||! !|||:! roLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValVa 262899 : CACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGT : 262955 54 : eGlyTyrThrThrIleLeuIleThrValIleProAlaIleLeuGlnLeuIleLeuGly : 72 ! !!||| ! !|||||| !||||||||||||:!!||||||!!.:!!:!!|||! ! lCysTyrCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGlu 262956 : CTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAA : 263012 73 : AspIleAspLeuHisThrLysValValLeuValGlyProMetSerHisTrpCysLeuG : 92 ! ! :!!!!!|||! !|||:!! !:!!:!!||||||:!:.!!!!.|||! !:!!| AlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValG 263013 : GCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCG : 263072 93 : lyGlyIleGlyTyrThrMetLeuLeuMetHisAspGluGluIleLysTrpCysValGl : 111 || !|||..!|||||| !||||||:!:|||..!:!!!!:|||:!! ! ||||||:! lyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGl 263073 : GTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCA : 263129 112 : uArgValLysAsnAspTrpArgSerIleMetAsnProGluMetGlnGlnThrMetIle : 130 !!.!|||:!!.!.|||||| !!! !:!:! !.. !||| |||!::! !|||:!: nHisValGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeu 263130 : ACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTG : 263186 131 : LysAsnAlaLysLeuSerArgTyrValValSerLeuCysAlaIleLeuMetGlnSerA : 150 ||||||||||||! !.!!|||||||||!.!:!!! !|||||||||!!!||||||!!!: LysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrS 263187 : AAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGA : 263246 151 : laValLeuGlyPheGlyValGluLysAlaLeuSerThrGlnValIleThrValGlyAs : 169 :!:!!:!! !! !!:!!! ! !|||!!!!!!|||||||||||| !! !||||| erIleMetCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAs 263247 : GCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAA : 263303 170 : nGluThrLysValValHisMetLeuProCysAlaThrTyrArgLysLeuLeuProVal : 188 |||||||!:!:!!:!!!.!|||||||||||| !!..!|||!:!:!!:!!:!!|||||| nGluThrArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProVal 263304 : CGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTC : 263360 189 : AspThrSerProThrPheGluIleValLeuValAlaGlnLeuValSerGlyPhePheV : 208 ||||||!:!|||||| !|||||| !!|||!.!.!!|||!!!:!!|||||||||.!!| AspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleV 263361 : GACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCG : 263420 209 : alAsnGlyThrPheAlaGlyAlaPheSerLeuAlaSerAlaPheThrLeuHisAlaTy : 227 ||!.!!.!||| !!.!|||||||||.!!:!!.!!:!!!.!|||.!! !||||||! alThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCy 263421 : TCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTG : 263477 228 : rSerGlnLeuAsnIleLeuAlaThrTrpIleThrGluAlaValAspGlnSer : 244 !.!!|||||||||:!:||| !:!!|||||||||||| !|||:!!|||||| sGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSer 263478 : CGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCC : 263530 vulgar: gi|805766376|ref|XP_012135244.1| 14 244 . KQ414889.1 262840 263530 + 594 M 230 690 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262841 263530 594 + . gene_id 6 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262841 263530 . + . KQ414889.1 exonerate:protein2genome:local exon 262841 263530 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262841 263530 594 + . alignment_id 6 ; Query gi|805766376|ref|XP_012135244.1| ; Align 262841 15 690 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 443 Query range: 17 -> 362 Target range: 284523 -> 287338 18 : TyrSerLeuGlnLeuAsnArgTrpLeuLeuLysSerIleGlyAlaTrpProLysSerS : 37 ||||||:!!|||:!!|||||||||!!!|||||| !!||||||!.!|||||| ||| TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 38 : erSerThrThrLysThrGluLeuThrValSerLeuIleLeuThrValIleGlyTyrTh : 56 !!!!..!|||! !||| !! ! !|||:!!:!!|||.!!:!!|||.!!! ! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 57 : rThrIleLeuIleThrValIleProAlaIleLeuGlnLeuIleLeuGlyAspIle<-> : 75 ! !||| !.!! !:!!:!!|||..! !||| !:!:|||! ! ! ! ! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 76 : AspLeuHisThrLysValValLeuValGlyProMetSerHisTrpCysLeuGlyGlyI : 94 |||||| !!||||||:!! !:!!:!!||||||:!!||| !!! :!!!.!!.!| AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 95 : leGlyTyrThrMetLeuLeuMetHisAspGluGluIleLysTrpCysValGluArgVa : 113 || !||| !!!:|||:!! !!.!! !! :!!||| ||||||:!! !:! leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 114 : lLysAsnAsp{Tr} >>>> Target Intron 1 >>>> {p}ArgSerIleMet : 121 !::: |||{||} 1012 bp {|}! !||| !! eArgAlaAsp{Tr}++ +-{p}LeuSerHisSer 284813 : TCGTGCGGAC{TG}gt.........................ac{G}CTTTCGCATAGt : 285848 122 : AsnProGluMetGlnGlnThrMetIleLysAsnAlaLysLeuSerArgTyrValValS : 141 ... ||| :::::: |||! ! !:!|||!:!:!!.!!|||! !:!!!.!! GlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaI 285849 : caagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGA : 285908 142 : erLeuCysAlaIleLeuMetGlnSerAlaValLeuGlyPheGlyValGluLysAlaLe : 160 !!!!|||||| !!!!||| ! |||!.!! !!!! !!:! !..!! !! ! !!|| lePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLe 285909 : TCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTT : 285965 161 : uSerThrGlnValIleThrValGlyAsnGluThrLysValValHisMetLeuProCys : 179 |!!!||| ||| !|||! ! !! !!!:!.!:!!..!|||... ! ! !!! ! uCysThr---ValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPhe 285966 : GTGCACA---GTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTC : 286019 180 : AlaThrTyrArgLysLeuLeuProValAspThrSerProThrPheGluIleValLeuV : 199 !!! !|||||| |||||| ! ! !|||||||||:!!||||||||||||! ! ProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnP 286020 : CCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAAT : 286079 200 : alAlaGlnLeuValSerGlyPhePheValAsnGlyThrPheAlaGlyAlaPheSerLe : 218 !! !|||! !:!!:!!!.!||| !!:!! !!..!..! !!.!||||||! !||||| heMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLe 286080 : TCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTT : 286136 219 : uAlaSerAlaPheThrLeuHisAlaTyrSerGlnLeuAsnIleLeuAlaThrTrpIle : 237 ||||:!!!.!|||..!:!!|||!.!! !.!!|||!!!!..||||||!.!||| !:!: uAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeu 286137 : GGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTG : 286193 238 : ThrGluAlaValAsp{G} >>>> Target Intron 2 >>>> {ln}SerSerL : 246 !:!! !||||||{ } 432 bp { !}!:!! !! AspLysLeuValAsp{V}+- ++{al}AsnIleT 286194 : GATAAGCTCGTCGAC{G}ga.........................ag{TA}AATATCT : 286652 247 : euAsnAspValGlyAlaIleValArgLysHisLeuAlaIleLeuSerPheIleSerAr : 265 !.!.:!!!.!!.!!.! ! ! !!||| ! !.!!|||!!!||||||||||||!: yrGluAsnAlaAlaGly***GlnTrpLysIleArgThrIlePheSerPheIleSerGl 286653 : ATGAGAACGCAGCTGGCTAACAGTGGAAAATACGAACGATTTTCAGTTTTATATCGCA : 286709 266 : gIleGluAlaIleMetAsnGluIleCysPheMetGluLeuPheLysCysThrPheSer : 284 !||||||!.!:!!:!:|||||||||||||||:!:|||:!!.!! ||||||!!.!:! nIleGluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsn 286710 : AATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAAC : 286766 285 : IleCysLeuLeuGlyPheAsnIleIleLeu >>>> Target Intron 3 >>>> : 295 ||||||!!!||||||!:! !!:!!:!: ! 265 bp IleCysPheLeuGlyTyrTyrLeuLeuThr++ + 286767 : ATATGCTTTTTGGGATATTATTTACTGACGgt.........................a : 287062 296 : CysAsnLysIleGlyGluAlaIleTyrMetSerAsnTrpTyrTyrLeuAlaAspLys : 313 ||| |||:!!||| !:!!! !||||||! !:!!|||||| !||| !!! ||| +CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLys 287063 : gtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAA : 287118 314 : AspIleHisAsnLeuMetMetIleIleSerArgSerCysValGluThrLysIleThrA : 333 !!!...!|||!!::!!|||.!!:!! !||| ! !...! !|||:!!|||| ThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrA 287119 : ACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAG : 287178 334 : laGlyLysIleValHisMetSerPheTyrThrLeuAlaSer >>>> Target Int : 347 |||||||||||:!! !!:!:|||!!. !!:!!!!..!||| 71 bp laGlyLysIleIleAspLeuSerLeuSerSerPheCysSer++ 287179 : CTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt............... : 287222 348 : ron 4 >>>> ValIleLysSerSerPheAlaTyrThrAsnIleLeuLeuGlnThrT : 362 |||:!:||||||:!!||||||||| !!:!:!!|||! ! ! !| ++ValLeuLysSerAlaPheAlaTyrLeuSerLeuLeuArgThrLeuT 287223 : ..........agGTGTTGAAATCGGCATTCGCATATCTGAGCTTATTACGTACGCTAA : 287336 363 : hr : 362 || hr 287337 : CC : 287338 vulgar: gi|805766376|ref|XP_012135244.1| 17 362 . KQ414889.1 284523 287338 + 443 M 57 171 G 0 3 M 42 126 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 45 135 G 1 0 M 79 237 S 0 1 5 0 2 I 0 428 3 0 2 S 1 2 M 51 153 5 0 2 I 0 261 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 287338 443 + . gene_id 7 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284524 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286211 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286211 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 286212 286213 . + . intron_id 2 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 286212 286643 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286642 286643 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286644 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286644 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287220 287221 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 287220 287290 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287289 287290 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 287291 287338 . + . KQ414889.1 exonerate:protein2genome:local exon 287291 287338 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284524 287338 443 + . alignment_id 7 ; Query gi|805766376|ref|XP_012135244.1| ; Align 284524 18 171 ; Align 284698 75 126 ; Align 285839 118 135 ; Align 285974 164 237 ; Align 286646 244 153 ; Align 287064 295 156 ; Align 287291 347 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 426 Query range: 16 -> 242 Target range: 232456 -> 233134 17 : AspTyrSerLeuGlnLeuAsnArgTrpLeuLeuLysSerIleGlyAlaTrpProLysS : 36 !!:||||||:!!|||:!!|||||||||!!!|||! ! !!!!:||||||||||||::: GluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgV 232457 : GAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTG : 232514 37 : erSerSerThrThrLysThrGluLeuThrValSerLeuIleLeuThrValIleGlyTy : 55 !!!!..!|||:!!!:!.!!:!!! ! !:!!:!! !:!:|||! !:!!! ! !!:! alThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHi 232515 : TTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCA : 232571 56 : rThrThrIleLeuIleThrValIleProAlaIleLeuGlnLeuIleLeuGlyAspIle : 74 !:!! !!!::!! !:!!:!!:!!|||..!|||||| :!!:!:!!!! !|||! sSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThr 232572 : TTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACG : 232628 75 : AspLeuHisThrLysValValLeuValGlyProMetSerHisTrpCysLeuGlyGlyI : 94 ..!|||.!. !!:!:!! !! !:!!|||||||||||||||!:: :!!|||! !: SerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluL 232629 : AGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAAT : 232688 95 : leGlyTyrThrMetLeuLeuMetHisAspGluGluIleLysTrpCysValGluArgVa : 113 !:..!||| ! |||||| ! ! .!.!!:||| !::|||||||||!:!|| euAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnVa 232689 : TGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGT : 232745 114 : lLysAsnAspTrpArgSerIleMetAsnProGluMetGlnGlnThrMetIleLysAsn : 132 ||||.!.|||||||||!:!:!!! !!!.|||! !::.!. !|||:!:|||||| lLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsn 232746 : GAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAAC : 232802 133 : AlaLysLeuSerArgTyrValValSerLeuCysAlaIleLeuMetGlnSerAlaValL : 152 |||||||||.!!|||! :!!!.!!!!:!!..!|||.!!! !|||!!.!!!!.!||| AlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValG 232803 : GCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCG : 232862 153 : euGlyPheGlyValGluLysAlaLeuSerThrGlnValIleThrValGlyAsnGluTh : 171 !..! !! !:!!! ! !!.!||| !!! !.....!.!! !||||||||||||!: lySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSe 232863 : GCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAG : 232919 172 : rLysValValHisMetLeuProCysAlaThrTyrArgLysLeuLeuProValAspThr : 190 ! ! !:!!:!! !|||||||||.!! !|||! !||||||:!! !..! ! rTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPhe 232920 : TTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTC : 232976 191 : SerProThrPheGluIleValLeuValAlaGlnLeuValSerGlyPhePheValAsnG : 210 ||||||||| !||||||:!!!!!||| !|||! !:!!|||||||||.!!||||||. SerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnS 232977 : AGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACT : 233036 211 : lyThrPheAlaGlyAlaPheSerLeuAlaSerAlaPheThrLeuHisAlaTyrSerGl : 229 .!..! !!.!||||||! !.!!|||!.!:!!!.!.!..!!:!!||||||! !.!!|| erValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGl 233037 : CCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACA : 233093 230 : nLeuAsnIleLeuAlaThrTrpIleThrGluAlaValAsp : 242 |||||||:!::!! !:!! :!: !!!: !|||||| nLeuAsnValValMetSerLysLeuAspAspLeuValAsp 233094 : GCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGAC : 233134 vulgar: gi|805766376|ref|XP_012135244.1| 16 242 . KQ414889.1 232456 233134 + 426 M 226 678 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232457 233134 426 + . gene_id 8 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232457 233134 . + . KQ414889.1 exonerate:protein2genome:local exon 232457 233134 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232457 233134 426 + . alignment_id 8 ; Query gi|805766376|ref|XP_012135244.1| ; Align 232457 17 678 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 326 Query range: 16 -> 242 Target range: 217171 -> 217849 17 : AspTyrSerLeuGlnLeuAsnArgTrpLeuLeuLysSerIleGlyAlaTrpProLysS : 36 ::: |||:!!|||! !|||||||||||||||||| !!!!:||| !||||||!!.| AsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnS 217172 : aatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACT : 217229 37 : erSerSerThrThrLysThrGluLeuThrValSerLeuIleLeuThrValIleGlyTy : 55 || !!!!!||||||!:!:!!..! !! !:!!! ! !:!::!!!.!!.!:!! !!|| erArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTy 217230 : CACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTA : 217286 56 : rThrThrIleLeuIleThrValIleProAlaIleLeuGlnLeuIleLeuGlyAspIle : 74 | ! !||| !.!! ! !!:!!|||..! !:!! ! :!!.!!|||! !! ! ! rGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeuGluValGlu 217287 : CGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAA : 217343 75 : AspLeuHisThrLysValValLeuValGlyProMetSerHisTrpCysLeuGlyGlyI : 94 ||||||:!! !|||:!! !||| !!||||||:!!! ! !!! :!!!.! !: AspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValMetAlaPheV 217344 : GATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCG : 217403 95 : leGlyTyrThrMetLeuLeuMetHisAspGluGluIleLysTrpCysValGluArgVa : 113 !! !||| ! |||:!!:!:||| ! ! !!!:|||::: !||||||..!|||:! alLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCysValArgArgIl 217404 : TCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAAT : 217460 114 : lLysAsnAspTrpArgSerIleMetAsnProGluMetGlnGlnThrMetIleLysAsn : 132 !:!!...|||||||||!:!:!!! ! !:!! ::!:!!.!!|||||| !||| eGluArgAspTrpArgAsnValArgCysGluLysAspArgGluAlaMetIleValAsn 217461 : CGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAAC : 217517 133 : AlaLysLeuSerArgTyrValValSerLeuCysAlaIleLeuMetGlnSerAlaValL : 152 |||!!.!!!.!!||| ! :!!||| !||||||.!!.!!!!!||| ! |||... : AlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheV 217518 : GCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcg : 217577 153 : euGlyPheGlyValGluLysAlaLeuSerThrGlnValIleThrValGlyAsnGluTh : 171 :: ::: ::!! ! ! !!:!!|||..! ! !||| ! !! !|||! !!. alPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGluAsnGlyAs 217578 : ttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAA : 217634 172 : rLysValValHisMetLeuProCysAlaThrTyrArgLysLeuLeuProValAspThr : 190 ! ..! !! ! !||| !! ! !! ! !:! ! :!!:!! !..! ! ! nLeuThrPheIleProLeuValPheProPheThrLysTyrIleIleAspThrArgTyr 217635 : CCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTAC : 217691 191 : SerProThrPheGluIleValLeuValAlaGlnLeuValSerGlyPhePheValAsnG : 210 !!!|||||| !|||||||||!!! !! !||||||:!!:!!||| !!!.:!!:!!| ThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisG 217692 : ACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACG : 217751 211 : lyThrPheAlaGlyAlaPheSerLeuAlaSerAlaPheThrLeuHisAlaTyrSerGl : 229 ||! ! :!!!.!|||! !|||||||||:!!||||||.!!:!!||||||! !.!!|| lyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGl 217752 : GAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCA : 217808 230 : nLeuAsnIleLeuAlaThrTrpIleThrGluAlaValAsp : 242 |:!!.!.:!:||| !!.!|||:!: !.!. !:!!||| nIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAsp 217809 : GATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGAC : 217849 vulgar: gi|805766376|ref|XP_012135244.1| 16 242 . KQ414889.1 217171 217849 + 326 M 226 678 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217172 217849 326 + . gene_id 9 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217172 217849 . + . KQ414889.1 exonerate:protein2genome:local exon 217172 217849 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217172 217849 326 + . alignment_id 9 ; Query gi|805766376|ref|XP_012135244.1| ; Align 217172 17 678 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 294 Query range: 5 -> 242 Target range: 226894 -> 227605 6 : IleThrGluGlnThrAspProGluIleLeuSerAspTyrSerLeuGlnLeuAsnArgT : 25 :!!.!! !:!!!.!||| !:!! !! !! !:!! |||:!!||||||||||||| LeuAlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgT 226895 : CTCGCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTT : 226952 26 : rpLeuLeuLysSerIleGlyAlaTrpProLysSerSerSerThrThrLysThrGluLe : 44 ||||||||||| !!:!!||| !||||||..!||| !!!.!!:!:!!::!! !! ! rpLeuLeuLysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGlyAr 226953 : GGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAG : 227009 45 : uThrValSerLeuIleLeuThrValIleGlyTyrThrThrIleLeuIleThrValIle : 63 ! ! !!|||! !:!::!! ! !!:!! !!|||.!! !!!: !.!! !:!!:!! gCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuVal 227010 : ATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTC : 227066 64 : ProAlaIleLeuGlnLeuIleLeuGlyAspIleAspLeuHisThrLysValValLeuV : 83 !!::! !||| ! :!!:!!|||! !! ! !! ! !:!!!.!! !:!! !:!!: SerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetI 227067 : TCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGA : 227126 84 : alGlyProMetSerHisTrpCysLeuGlyGlyIleGlyTyrThrMetLeuLeuMetHi : 102 !!|||||||||||| !!::...:!!..! !:!! !|||:!!|||||| !.!.|| leGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHi 227127 : TCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCA : 227183 103 : sAspGluGluIleLysTrpCysValGluArgValLysAsnAspTrpArgSerIleMet : 121 |!!:!!:!!:||| !||||||||||||:!!||| ||||||!:!!:!|||! sGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArg 227184 : CGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGA : 227240 122 : AsnProGluMetGlnGlnThrMetIleLysAsnAlaLysLeuSerArgTyrValValS : 141 !!! !||| ::!.!...!|||:!:! ! !!||| ! ! !.!!||| ! :!!:!!! TyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleT 227241 : TACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCA : 227300 142 : erLeuCysAlaIleLeuMetGlnSerAlaValLeuGlyPheGlyValGluLysAlaLe : 160 !!:!!|||.!!.!!!!!:!: |||::: ::: ||| :!!! ! !!:! hrIleCysThrPhePheValPheSerSerPheValPhePheTyrIleValValProIl 227301 : CTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTAT : 227357 161 : uSerThrGlnValIleThrValGlyAsnGluThrLysValValHisMetLeuProCys : 179 !!:!.!! ! !:!!.!!..!! !:!!! !!.! ! ! ! !..!:!!|||! ! eAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPhe 227358 : CAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTT : 227414 180 : AlaThrTyrArgLysLeuLeuProValAspThrSerProThrPheGluIleValLeuV : 199 !! ! !:!! :!! ! !||| ! !|||||| ! !|||||| !!!!! ProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheS 227415 : CCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTT : 227474 200 : alAlaGlnLeuValSerGlyPhePheValAsnGlyThrPheAlaGlyAlaPheSerLe : 218 !!.!|||!!!|||!!!|||.!! ! :!!:!!|||..! :!!!.!|||! !|||:! erValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMe 227475 : CGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTAT : 227531 219 : uAlaSerAlaPheThrLeuHisAlaTyrSerGlnLeuAsnIleLeuAlaThrTrpIle : 237 !|||:!! !.!!.!!:!!||||||! !.!!|||:!!.!.:!:|||!.!:!!|||:!: tAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeu 227532 : GGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTG : 227588 238 : ThrGluAlaValAsp : 242 !.!. !:!!||| GlyHisLeuIleAsp 227589 : GGACATTTGATCGAC : 227605 vulgar: gi|805766376|ref|XP_012135244.1| 5 242 . KQ414889.1 226894 227605 + 294 M 237 711 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226895 227605 294 + . gene_id 10 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226895 227605 . + . KQ414889.1 exonerate:protein2genome:local exon 226895 227605 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226895 227605 294 + . alignment_id 10 ; Query gi|805766376|ref|XP_012135244.1| ; Align 226895 6 711 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 284 Query range: 16 -> 242 Target range: 208209 -> 208887 17 : AspTyrSerLeuGlnLeuAsnArgTrpLeuLeuLysSerIleGlyAlaTrpProLysS : 36 ..!!:!!:!:!!!::|||||| !||| !||||||! !||||||:!!||||||!:!| SerPheAsnValArgLeuAsnValTrpThrLeuLysIleIleGlySerTrpProArgS 208210 : AGCTTCAACGTTCGTCTGAACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGAT : 208267 37 : erSerSerThrThrLysThrGluLeuThrValSerLeuIleLeuThrValIleGlyTy : 55 ||! !..! !:!! ! !||| !!:! ! !:!!:!!|||!.!|||:!!.!!:! erIleAspArgSerTrpLeuGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHi 208268 : CTATAGATCGTTCCTGGTTAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCA : 208324 56 : rThrThrIleLeuIleThrValIleProAlaIleLeuGlnLeuIleLeuGlyAspIle : 74 ! ! !:!! !.!!! !|||||||||.!! !:!! !||||||! !! ! sCysLeuLeuGlyPheIleValIleProThrGlyMetPheAlaIleLeuValValGlu 208325 : CTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAG : 208381 75 : AspLeuHisThrLysValValLeuValGlyProMetSerHisTrpCysLeuGlyGlyI : 94 |||!!!:!! !:!!:!! !:!! !.!! !!:!!||| !!:: :!!!.! !! AspPheTyrAspGlnLeuLysIleCysSerAlaLeuSerPhePheMetMetAlaPheT 208382 : GATTTTTACGACCAATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCA : 208441 95 : leGlyTyrThrMetLeuLeuMetHisAspGluGluIleLysTrpCysValGluArgVa : 113 !|||..!!!::!! !:!:!.!!!:! !!:|||::! !||||||||| !|| hrLysTyrValIleMetThrValArgGluGlyAspIleArgLysCysValGluTyrVa 208442 : CGAAGTACGTGATCATGACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGT : 208498 114 : lLysAsnAspTrpArgSerIleMetAsnProGluMetGlnGlnThrMetIleLysAsn : 132 |:!! !|||||||||!:!:!: !:!! !||| ::!:!!! !|||:!: ! ||| lGluAlaAspTrpArgAsnValGluHisGluGluAspArgLysIleMetLeuAspAsn 208499 : CGAGGCTGATTGGAGAAACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAAC : 208555 133 : AlaLysLeuSerArgTyrValValSerLeuCysAlaIleLeuMetGlnSerAlaValL : 152 |||!..!!!:!!||| ! :!!:!! !:!!|||!.! !!!!||| ! .!!!..|||: AlaSerPheAlaArgLysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyValI 208556 : GCGAGTTTCGCCAGGAAACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaa : 208615 153 : euGlyPheGlyValGluLysAlaLeuSerThrGlnValIleThrValGlyAsnGluTh : 171 :: ::: :!!! ! !!|||!!! !.!. !:!!..!! !! !..!! !. lePheTyrTyrIleAlaLeuProLeuThrArgAspLysValValGluGluGlyGlyAs 208616 : ttttctattacaTCGCTTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAA : 208672 172 : rLysValValHisMetLeuProCysAlaThrTyrArgLysLeuLeuProValAspThr : 190 ! !..! !...! !||| !! ! !!..! !!:! :!!||| !||| ! nLeuThrTyrArgArgLeuValTyrProValProLysPheIleLeuAspValArgTyr 208673 : TTTGACGTACAGAAGGCTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATAC : 208729 191 : SerProThrPheGluIleValLeuValAlaGlnLeuValSerGlyPhePheValAsnG : 210 ||||||..! !|||||| !!! !..!!.!||||||:!!||||||||| !!!.!:!!. SerProValAsnGluIlePheTyrThrValGlnLeuLeuSerGlyPheValAlaHisA 208730 : AGTCCTGTGAATGAGATTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATA : 208789 211 : lyThrPheAlaGlyAlaPheSerLeuAlaSerAlaPheThrLeuHisAlaTyrSerGl : 229 .!! ! !.!||||||! !.!!||||||:!! !.!!.!!:!!||||||! !.!!|| snIleThrValGlyAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGl 208790 : ATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACA : 208846 230 : nLeuAsnIleLeuAlaThrTrpIleThrGluAlaValAsp : 242 ||||.!.|||||| !:!!|||!!: !:!! !|||||| nLeuGlnIleLeuMetSerTrpMetGluLysLeuValAsp 208847 : GCTGCAGATTTTGATGTCCTGGATGGAGAAGTTGGTCGAT : 208887 vulgar: gi|805766376|ref|XP_012135244.1| 16 242 . KQ414889.1 208209 208887 + 284 M 226 678 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208210 208887 284 + . gene_id 11 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208210 208887 . + . KQ414889.1 exonerate:protein2genome:local exon 208210 208887 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208210 208887 284 + . alignment_id 11 ; Query gi|805766376|ref|XP_012135244.1| ; Align 208210 17 678 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 281 Query range: 16 -> 242 Target range: 212869 -> 213547 17 : AspTyrSerLeuGlnLeuAsnArgTrpLeuLeuLysSerIleGlyAlaTrpProLysS : 36 ::: |||::: !! !|||||||||||||||||| !!! ||| !|||||| ! ! AsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspL 212870 : aatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACA : 212927 37 : erSerSerThrThrLysThrGluLeuThrValSerLeuIleLeuThrValIleGlyTy : 55 .!|||! !..!:!! !! !||| !!.!:!!:!!! !:!::!!!.!..!:!! !!|| ysSerTyrValSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTy 212928 : AGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTA : 212984 56 : rThrThrIleLeuIleThrValIleProAlaIleLeuGlnLeuIleLeuGlyAspIle : 74 | ! !||| ! ! !|||||||||..!! !||| ! :!!.!!|||! !! rGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGlu 212985 : CGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgag : 213041 75 : AspLeuHisThrLysValValLeuValGlyProMetSerHisTrpCysLeuGlyGlyI : 94 :::::: ::::!!! !||| !!||| !.!.:!! !!! !!.! ! AsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuT 213042 : aatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGT : 213101 95 : leGlyTyrThrMetLeuLeuMetHisAspGluGluIleLysTrpCysValGluArgVa : 113 !||| ! !|||:!!:!:|||! !!!:!!:|||::: !|||||||||!.!:! rpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMe 213102 : GGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATAT : 213158 114 : lLysAsnAspTrpArgSerIleMetAsnProGluMetGlnGlnThrMetIleLysAsn : 132 !||| !!||||||!:!!:!|||! !:!! !||| :!!:!!! !||| !||| tLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsn 213159 : GAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAAC : 213215 133 : AlaLysLeuSerArgTyrValValSerLeuCysAlaIleLeuMetGlnSerAlaValL : 152 |||!..!!!.!!!:! :!!|||!!!:!!||||||.!!!!!||| ! !!!!.! !! AlaSerPheGlyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheT 213216 : GCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCA : 213275 153 : euGlyPheGlyValGluLysAlaLeuSerThrGlnValIleThrValGlyAsnGluTh : 171 ! !!:! !:!!! ! !!:!!|||.!!.!. !!!:..!!.!! !:!! !. hrPheTyrPheLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAs 213276 : CGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAA : 213332 172 : rLysValValHisMetLeuProCysAlaThrTyrArgLysLeuLeuProValAspThr : 190 ! !..! !!......:!! ! ! !!..!! ||| :!!:!! !||| ! nValThrPheArgGlnMetValValProValSerArgPheIleValAspValArgTyr 213333 : CGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATAC : 213389 191 : SerProThrPheGluIleValLeuValAlaGlnLeuValSerGlyPhePheValAsnG : 210 ||||||..! !|||||| !!!!!:!! !|||:!!:!!:!!||| ! .!.:!!:!!! SerProValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisA 213390 : AGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATG : 213449 211 : lyThrPheAlaGlyAlaPheSerLeuAlaSerAlaPheThrLeuHisAlaTyrSerGl : 229 .!! ! !.!! !|||! !|||||||||:!!!.!|||.!!:!!||||||! !.!!|| laIleAlaValValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGl 213450 : CTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACA : 213506 230 : nLeuAsnIleLeuAlaThrTrpIleThrGluAlaValAsp : 242 |:!!..!|||||| !!:!|||:!: !.!. !:!!||| nMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAsp 213507 : GATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGAC : 213547 vulgar: gi|805766376|ref|XP_012135244.1| 16 242 . KQ414889.1 212869 213547 + 281 M 226 678 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212870 213547 281 + . gene_id 12 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212870 213547 . + . KQ414889.1 exonerate:protein2genome:local exon 212870 213547 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212870 213547 281 + . alignment_id 12 ; Query gi|805766376|ref|XP_012135244.1| ; Align 212870 17 678 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 267 Query range: 260 -> 347 Target range: 263671 -> 264885 261 : SerPheIleSerArgIleGluAlaIleMetAsnGluIleCysPheMetGluLeuPheL : 280 |||||||||..!||||||:!! !:!:|||!:! !|||||||||:!!|||||||||| SerPheIleAspArgIleLysAsnValMetSerThrIleCysPheValGluLeuPheL 263672 : AGTTTCATAGATCGTATTAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCA : 263729 281 : ysCysThrPheSerIleCysLeuLeuGlyPheAsnIleIleLeu >>>> Target : 295 ||..!|||.!...!||||||:!!||||||!:! !!|||:!! ! 95 ysAlaThrLeuAspIleCysMetLeuGlyTyrTyrIleLeuThr++ 263730 : AGGCTACGCTGGATATATGCATGCTAGGTTACTACATACTTACGgt............ : 263776 296 : Intron 1 >>>> CysAsnLysIleGlyGluAlaIleTyrMetSerAsnTrpTyrT : 309 3 bp |||!!.|||:!!||||||!.!:!!||||||||||||||||||| ++CysLysLysValGlyGluValValTyrMetSerAsnTrpTyrT 263777 : .............agTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATT : 264769 310 : yrLeuAlaAspLysAspIleHisAsnLeuMetMetIleIleSerArgSerCysValGl : 328 ||||| !! !!|||||||||! !:!!|||!!::!:||||||! !|||||| !!|||! yrLeuProTyrLysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValVa 264770 : ACTTACCCTACAAAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGT : 264826 329 : uThrLysIleThrAlaGlyLysIleValHisMetSerPheTyrThrLeuAlaSerVal : 347 ! !|||.!!|||||||||||||||:!!|||||||||.!.||||||!!!::!..!||| lPheLysPheThrAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264827 : GTTTAAATTCACCGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264883 vulgar: gi|805766376|ref|XP_012135244.1| 260 347 . KQ414889.1 263671 264885 + 267 M 34 102 5 0 2 I 0 949 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 263672 264885 267 + . gene_id 13 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 263672 263773 . + . KQ414889.1 exonerate:protein2genome:local exon 263672 263773 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263774 263775 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263774 264726 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 263672 264885 267 + . alignment_id 13 ; Query gi|805766376|ref|XP_012135244.1| ; Align 263672 261 102 ; Align 264727 295 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 239 Query range: 17 -> 242 Target range: 278576 -> 279260 18 : TyrSerLeuGlnLeuAsnArgTrpLeuLeuLysSerIleGlyAlaTrpProLysSerS : 37 ||||||:!!|||:!!|||||||||!!!|||||| !!||||||!.!|||||| ||| TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 38 : erSerThrThrLysThrGluLeuThrValSerLeuIleLeuThrValIleGlyTyrTh : 56 !!!!..!|||! !||| !! ! !|||:!!:!!|||.!!:!!|||.!!! ! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 57 : rThrIleLeuIleThrValIleProAlaIleLeuGlnLeuIleLeuGlyAspIle<-> : 75 ! !||| !.!! !:!!:!!|||..! !||| !:!:|||! ! ! ! ! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 76 : AspLeuHisThrLysValValLeuValGlyProMetSerHisTrpCysLeuGlyGlyI : 94 |||||| !!||||||:!! !:!!:!!||||||:!:||| !!! :!!!.! !| AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 95 : leGlyTyrThrMetLeuLeuMetHisAspGluGluIleLysTrpCysValGluArgVa : 113 || !||| !!!:|||:!! !!.!! !! :!!||| ||||||.!. !:! leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 114 : lLysAsnAspTrpArg<-><-><->SerIleMetAsnProGluMetGlnGlnThrMet : 129 !:::!..|||||| ! ||| ! ... ||| :::::: ||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 130 : IleLysAsnAlaLysLeuSerArgTyrValValSerLeuCysAlaIleLeuMetGlnS : 149 ! ! !:!|||!:!:!!.!!|||! !:!!!.!! !!!! !!||| !!!!||| ! | ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 150 : erAlaValLeuGlyPheGlyValGluLysAlaLeuSerThrGlnValIleThrValGl : 168 ||!.!! !:!! !!:! !!.!! !! ! !!|||! !.!! ||| !|||! ! erGlyGlyValPheTyrThrAlaValMetProLeuPheAla---ValArgThrGluIl 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCA---GTACGCACGGAGAT : 279036 169 : yAsnGluThrLysValValHisMetLeuProCysAlaThrTyrArgLysLeuLeuPro : 187 !! !!!:!.!:!!..!|||... ! ! !!! ! !!! !|||||| |||||| ! eIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAsp 279037 : CATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGAT : 279093 188 : ValAspThrSerProThrPheGluIleValLeuValAlaGlnLeuValSerGlyPheP : 207 ! !|||||||||:!!||||||||||||! ! !! !|||! !:!!:!!!.!||| ProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheV 279094 : CCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCG : 279153 208 : heValAsnGlyThrPheAlaGlyAlaPheSerLeuAlaSerAlaPheThrLeuHisAl : 226 !!:!! !!..!..! !!.!||||||! !|||||| !:!!!.!|||..!:!!|||!. alLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisVa 279154 : TTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGT : 279210 227 : aTyrSerGlnLeuAsnIleLeuAlaThrTrpIleThrGluAlaValAsp : 242 !! !.!!|||!!!!..||||||!.!||| !:!: !:!! !:!!||| lCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAsp 279211 : CTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGAC : 279260 vulgar: gi|805766376|ref|XP_012135244.1| 17 242 . KQ414889.1 278576 279260 + 239 M 57 171 G 0 3 M 44 132 G 0 9 M 44 132 G 1 0 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 279260 239 + . gene_id 14 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278577 279260 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279260 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278577 279260 239 + . alignment_id 14 ; Query gi|805766376|ref|XP_012135244.1| ; Align 278577 18 171 ; Align 278751 75 132 ; Align 278892 119 132 ; Align 279024 164 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 214 Query range: 18 -> 211 Target range: 294690 -> 295269 19 : SerLeuGlnLeuAsnArgTrpLeuLeuLysSerIleGlyAlaTrpProLys<->SerS : 37 ||||||:!!! ! !||| !!||||||||| !!|||||| !|||||| ! !| SerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrS 294691 : AGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACA : 294748 38 : erSerThrThrLysThrGluLeuThrValSerLeuIleLeuThrValIleGlyTyrTh : 56 || !|||!:!||| !.!. !..!:!!|||:!!||||||! !!.! !! erHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLe 294749 : GTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTT : 294805 57 : rThrIleLeuIleThrValIleProAlaIleLeuGlnLeuIleLeuGlyAspIleAsp : 75 !|||:!!|||.!!..!:!!:!:|||..! !! ! ! !:!!!!! !! ::: uThrValLeuPheValLeuValProCysGlyTyrPheCysValPheHisValLysAsn 294806 : GACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaac : 294862 76 : LeuHisThrLysValValLeuValGlyProMetSerHisTrpCysLeuGlyGlyIleG : 95 ::: |||:!! !|||:!!||||||:!: !:!!! |||..! !:!! ValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuA 294863 : gtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCA : 294922 96 : lyTyrThrMetLeuLeuMetHisAspGluGluIleLysTrpCysValGluArgValLy : 114 !!|||!:! |||:!!:!! ! ! !.!!||| |||:!!||| !:!!:! rgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCysIleGluAspIleGl 294923 : GGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGA : 294979 115 : sAsnAspTrpArgSerIleMetAsnProGluMetGlnGlnThrMetIleLysAsnAla : 133 !|||||||||!:!! !||| ||||||||| !:! !! !||||||||||||||| uAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIleMetIleLysAsnAla 294980 : GAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCG : 295036 134 : LysLeuSerArgTyrValValSerLeuCysAlaIleLeuMetGlnSerAlaValLeuG : 153 ! !:!!!!!!:! :!!..! ! !! !.!!|||:!!!!: ! |||:!!!.!:!!. MetValThrGlnArgMetThrValAlaPheThrIleIleIleTyrSerSerAlaValS 295037 : ATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGT : 295096 154 : lyPheGlyValGluLysAlaLeuSerThrGlnValIleThrValGlyAsnGluThrLy : 172 .!!:! !!.! ... :::......:!: ! ..!!!.:!!!.!!! erTyrHisAlaIleValProPhePheSerAsnAlaLeuGlu---AsnLysLysAsnAs 295097 : CGTATCACGCCATTGtgccatttttttcaaacgctTTGGAG---AACAAGAAGAATAA : 295150 173 : sValValHisMetLeuProCysAlaThrTyrArgLysLeuLeuProValAspThrSer : 191 ...!:!!!.! !|||||| ! !! !|||..! !!!!:!! !!.! !!:!!||| nThrIleArgAlaLeuProIleProGlyTyrGluLeuPheValAspAlaTyrSerSer 295151 : TACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGT : 295207 192 : ProThrPheGluIleValLeuValAlaGlnLeuValSerGlyPhePheValAsnGlyT : 211 ||||||!:!||||||:!! !..! !! !!!|||! !..!|||||||||||| !| ProThrTyrGluIleIleArgThrHisLeuPheValTyrSerPhePheValAsnLysT 295208 : CCTACCTACGAGATCATAAGAACTCATCTCTTTGTTTACTCGTTCTTCGTCAACAAAA : 295267 212 : hr : 211 || hr 295268 : CT : 295269 vulgar: gi|805766376|ref|XP_012135244.1| 18 211 . KQ414889.1 294690 295269 + 214 M 17 51 G 0 3 M 131 393 G 1 0 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294691 295269 214 + . gene_id 15 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294691 295269 . + . KQ414889.1 exonerate:protein2genome:local exon 294691 295269 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294691 295269 214 + . alignment_id 15 ; Query gi|805766376|ref|XP_012135244.1| ; Align 294691 19 51 ; Align 294745 36 393 ; Align 295138 168 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 196 Query range: 254 -> 357 Target range: 279891 -> 280465 255 : LysHisLeuAlaIleLeuSerPheIleSerArgIleGluAlaIleMetAsnGluIleC : 274 ||| ! !.!!|||!!!||||||||||||!:!||||||!.!:!!:!!|||||||||| LysIleArgThrIlePheSerPheIleSerGlnIleGluGlyLeuLeuAsnGluIleC 279892 : AAAATACGAACGATTTTCAGTTTTATATCGCAAATCGAGGGGCTCCTGAACGAAATAT : 279949 275 : ysPheMetGluLeuPheLysCysThrPheSerIleCysLeuLeuGlyPheAsnIleIl : 293 |||||:!:|||:!!.!! ||||||!!.!:!||||||!!!||| !!:! !!:!!:! ysPheValGluValIleGlyCysThrLeuAsnIleCysPheLeuThrTyrTyrLeuLe 279950 : GTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGACATATTATTTACT : 280006 294 : eLeu >>>> Target Intron 1 >>>> CysAsnLysIleGlyGluAlaIleT : 303 ! ! 265 bp ||| |||:!!|||! !:!!! !| uThr++ ++CysLeuLysValGlyValSerThrT 280007 : CACGgt.........................agTGCTTAAAAGTCGGCGTGTCAACTT : 280301 304 : yrMetSerAsnTrpTyrTyrLeuAlaAspLysAspIleHisAsnLeuMetMetIleIl : 322 |||||! !:!!|||||| !||| !!! ||| ! !!!...!|||!!::!!|||.! yrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePh 280302 : ACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATT : 280358 323 : eSerArgSerCysValGluThrLysIleThrAlaGlyLysIleValHisMetSerPhe : 341 !:!! !||| ! !...! !|||:!!|||||||||||||||:!! !!:!:|||!!. eAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeu 280359 : CGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTA : 280415 342 : TyrThrLeuAlaSerValIleLysSerSerPheAlaTyrThrAsnIle : 357 !!:!!!!..!||||||! !! ! !!:!!!.:!!||| !:!!:!: SerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280416 : AGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: gi|805766376|ref|XP_012135244.1| 254 357 . KQ414889.1 279891 280465 + 196 M 40 120 5 0 2 I 0 261 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 279892 280465 196 + . gene_id 16 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 279892 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279892 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 279892 280465 196 + . alignment_id 16 ; Query gi|805766376|ref|XP_012135244.1| ; Align 279892 255 120 ; Align 280277 295 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 187 Query range: 290 -> 347 Target range: 277542 -> 277713 291 : AsnIleIleLeuCysAsnLysIleGlyGluAlaIleTyrMetSerAsnTrpTyrTyrL : 310 |||.!! !! !|||!!.|||:!!||||||!.!:!!||||||!!!||||||||||||| AsnPheArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrL 277543 : AATTTCCGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATT : 277600 311 : euAlaAspLysAspIleHisAsnLeuMetMetIleIleSerArgSerCysValGluTh : 329 || !!||||||||||||! !||||||:!::!:||||||||||||||| !!::: euProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIl 277601 : TACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaat : 277657 330 : rLysIleThrAlaGlyLysIleValHisMetSerPheTyrThrLeuAlaSerVal : 347 ||||||||||||||||||::::::...|||||| ! ||||||!!!!.!..!||| eLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspVal 277658 : taaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTA : 277713 vulgar: gi|805766376|ref|XP_012135244.1| 290 347 . KQ414889.1 277542 277713 + 187 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277543 277713 187 + . gene_id 17 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277543 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277543 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277543 277713 187 + . alignment_id 17 ; Query gi|805766376|ref|XP_012135244.1| ; Align 277543 291 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 185 Query range: 258 -> 324 Target range: 260773 -> 262015 259 : IleLeuSerPheIleSerArgIleGluAlaIleMetAsnGluIleCysPheMetGluL : 278 :!:! !|||||||||||||||||||||! !:!:||||||..!|||||||||:!!|||| LeuCysSerPheIleSerArgIleGluAspValMetAsnArgIleCysPheLeuGluL 260774 : TTGTGCAGCTTCATATCGCGTATCGAGGATGTGATGAACCGGATATGCTTCCTGGAGT : 260831 279 : euPheLysCysThrPheSerIleCysLeuLeuGlyPheAsnIleIleLeu{Cy} >> : 295 |||||!:!||||||.!...!|||||||||||||||!:! !!|||:!!:!!{ } euPheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeuMet{Va}+- 260832 : TGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATATTCTTATG{GT}gc.. : 260886 296 : >> Target Intron 1 >>>> {s}AsnLysIleGlyGluAlaIleTyrMetSer : 305 1044 bp {!}:::|||:!!|||!!:!.!:!!||||||!!! -+{l}SerLysValGlyAspValValTyrMetThr 260887 : .......................tg{C}TCGAAAGTTGGTGACGTTGTTTACATGACA : 261956 306 : AsnTrpTyrTyrLeuAlaAspLysAspIleHisAsnLeuMetMetIleIleSerArg : 324 ||||||||||||||| !!||||||..!|||! !:!!|||!!::!!||||||:!!||| AsnTrpTyrTyrLeuProAspLysSerIleLeuAspLeuIleLeuIleIleAlaArg 261957 : AACTGGTATTATTTACCTGATAAAAGTATCCTTGATTTGATTTTGATCATTGCACGA : 262015 vulgar: gi|805766376|ref|XP_012135244.1| 258 324 . KQ414889.1 260773 262015 + 185 M 36 108 S 0 2 5 0 2 I 0 1040 3 0 2 S 1 1 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 260774 262015 185 + . gene_id 18 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 260774 260883 . + . KQ414889.1 exonerate:protein2genome:local exon 260774 260883 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260884 260885 . + . intron_id 1 ; splice_site "GC" KQ414889.1 exonerate:protein2genome:local intron 260884 261927 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261926 261927 . + . intron_id 0 ; splice_site "TG" KQ414889.1 exonerate:protein2genome:local cds 261928 262015 . + . KQ414889.1 exonerate:protein2genome:local exon 261928 262015 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 260774 262015 185 + . alignment_id 18 ; Query gi|805766376|ref|XP_012135244.1| ; Align 260774 259 108 ; Align 261929 296 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 294 -> 362 Target range: 273017 -> 273302 295 : CysAsnLysIleGlyGluAlaIleTyrMetSerAsnTrpTyrTyrLeuAlaAspLysA : 314 |||...||||||||||||!.!:!!||||||!!!||||||||||||||| !!! !|||| CysLysLysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProGlyLysA 273018 : tgtaaaaaaattggcGAGGTAGTTTACATGACGAACTGGTACTATTTACCCGGCAAAG : 273075 315 : spIleHisAsnLeuMetMetIleIleSerArgSerCysValGluThrLysIleThrAl : 333 |||||! !:!!|||!!::!!||||||||||||!!! !!|||! !! !||||||||||| spIleLeuAspLeuIleLeuIleIleSerArgCysSerValValIleLysIleThrAl 273076 : ATATCCTCGATCTGATTTTGATCATCTCAAGATGCAGTGTTGTGATTAAAATCACCGC : 273132 334 : aGlyLysIleValHisMetSer >>>> Target Intron 1 >>>> PheTyrT : 343 ||||!:!||||||! !|||||| 81 bp ...:::. aGlyArgIleValProMetSer++ ++LeuPheA 273133 : TGGCAGGATAGTTCCCATGTCTgt.........................agctctttg : 273243 344 : hrLeuAlaSerValIleLysSerSerPheAlaTyrThrAsnIleLeuLeuGlnThrTh : 362 .. ...|||!!:||||||:!!||||||||| !|||!!:|||! !|||||||| laLysPheGlnValMetLysSerAlaPheAlaTyrLeuAsnMetLeuArgGlnThrTh 273244 : caaaatttcaggtGATGAAAAGTGCGTTCGCGTACTTAAATATGCTACGACAAACGAC : 273300 363 : r : 362 | r 273301 : A : 273302 vulgar: gi|805766376|ref|XP_012135244.1| 294 362 . KQ414889.1 273017 273302 + 174 M 46 138 5 0 2 I 0 77 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 273018 273302 174 + . gene_id 19 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 273018 273155 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273155 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273156 273157 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273156 273236 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273235 273236 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 273237 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273237 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 273018 273302 174 + . alignment_id 19 ; Query gi|805766376|ref|XP_012135244.1| ; Align 273018 295 138 ; Align 273237 341 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 258 -> 359 Target range: 304930 -> 305819 259 : IleLeuSerPheIleSerArgIleGluAlaIleMetAsnGluIleCysPheMetGluL : 278 |||! !!!!||| :!!! !:!::!!.!!:!::!!.!.|||:!!||||||:!!|||! IleTyrArgPheSerAlaIleValGlnThrValLeuGlnGluValCysPheLeuGluP 304931 : ATTTATAGATTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTTCTTGGAAT : 304988 279 : euPheLysCysThrPheSerIleCysLeuLeuGlyPheAsnIleIleLeu >>>> T : 295 !!.!! ! !|||!!. !||||||||||||! !!:! !! !||| ! heIleGlySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysIleThr++ 304989 : TCATTGGTTCTACCTTACTGATATGTCTACTTGAATACTACTGTATAACGgt...... : 305041 296 : arget Intron 1 >>>> CysAsnLysIleGlyGluAlaIleTyrMetSerAsnT : 307 586 bp !!!:!!..:!!||| !:!! !!:!|||! !!:!| ++SerSerSerValGlyLeuSerCysPheMetIleSerT 305042 : ...................agAGCAGTAGCGTTGGATTATCCTGTTTTATGATCAGTT : 305661 308 : rpTyrTyrLeuAlaAspLysAspIleHisAsnLeuMetMetIleIleSerArgSerCy : 326 |||||:!!||| !! !||| ||||||..!|||!!::!:||||||:!!! !||| ! rpTyrHisLeuProThrLysThrIleHisGlyLeuIleLeuIleIleAlaMetSerSe 305662 : GGTACCATTTACCGACTAAGACGATACATGGTCTTATTTTAATCATTGCCATGTCAAG : 305718 327 : sValGluThrLysIleThrAlaGlyLysIleValHisMetSerPheTyrThrLeuAla : 345 ! ! !.!!||||||!:!|||||||||:!!||| !!:!:|||!!.! !|||!!!!.! rAsnProAlaLysIleSerAlaGlyLysValValAspLeuSerLeuSerThrPheGly 305719 : TAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTATCTTTATCCACATTTGGA : 305775 346 : SerValIleLysSerSerPheAlaTyrThrAsnIleLeuLeu : 359 !:!|||! ! ! ! !...:::::: :::|||:::::: AsnValSerTyrTyrGlnTyrSerAsnIleSerIleValIle 305776 : AACGTGAGTTACTATcaatattccaatatttcaattgttata : 305819 vulgar: gi|805766376|ref|XP_012135244.1| 258 359 . KQ414889.1 304930 305819 + 164 M 36 108 5 0 2 I 0 582 3 0 2 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304931 305819 164 + . gene_id 20 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 304931 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304931 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305624 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305819 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305819 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304931 305819 164 + . alignment_id 20 ; Query gi|805766376|ref|XP_012135244.1| ; Align 304931 259 108 ; Align 305625 295 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 290 -> 347 Target range: 283267 -> 283438 291 : AsnIleIleLeuCysAsnLysIleGlyGluAlaIleTyrMetSerAsnTrpTyrTyrL : 310 |||.!! !! !|||!!.|||:!!||||||!.!:!!||||||!!!|||! !!:!|||| AsnPheArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrL 283268 : AATTTCCGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATT : 283325 311 : euAlaAspLysAspIleHisAsnLeuMetMetIleIleSerArgSerCysValGluTh : 329 || !!||||||||||||! !||||||:!::!:||||||||||||||| !!::: euProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIl 283326 : TACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaat : 283382 330 : rLysIleThrAlaGlyLysIleValHisMetSerPheTyrThrLeuAlaSerVal : 347 ||||||||||||...|||::::::...|||||| ||||||!!!! !..!||| eLysIleThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspVal 283383 : taaaattaccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTA : 283438 vulgar: gi|805766376|ref|XP_012135244.1| 290 347 . KQ414889.1 283267 283438 + 159 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283268 283438 159 + . gene_id 21 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283268 283438 . + . KQ414889.1 exonerate:protein2genome:local exon 283268 283438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283268 283438 159 + . alignment_id 21 ; Query gi|805766376|ref|XP_012135244.1| ; Align 283268 291 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 294 -> 351 Target range: 254274 -> 254445 295 : CysAsnLysIleGlyGluAlaIleTyrMetSerAsnTrpTyrTyrLeuAlaAspLysA : 314 ||| |||:!!||||||!.!:!!||||||!!!:!!|||||||||||| !!.!.!:! CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgA 254275 : TGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAA : 254332 315 : spIleHisAsnLeuMetMetIleIleSerArgSerCysValGluThrLysIleThrAl : 333 |||! !:!!|||!!::!!||||||!!!|||||| !|||! ..!:!!|||||||| rgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAl 254333 : GAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGc : 254389 334 : aGlyLysIleValHisMetSerPheTyrThrLeuAlaSerValIleLysSerSer : 351 |||||||||| |||||||||.!!||||||!!!!.!..!|||! !:!!!!!!:! aGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 254390 : tggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 254445 vulgar: gi|805766376|ref|XP_012135244.1| 294 351 . KQ414889.1 254274 254445 + 158 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254275 254445 158 + . gene_id 22 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254275 254445 . + . KQ414889.1 exonerate:protein2genome:local exon 254275 254445 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254275 254445 158 + . alignment_id 22 ; Query gi|805766376|ref|XP_012135244.1| ; Align 254275 295 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 290 -> 358 Target range: 234976 -> 235251 291 : AsnIleIleLeuCysAsnLysIleGlyGluAlaIleTyrMetSerAsnTrpTyrTyrL : 310 |||! ! !! !|||!.!|||:!!|||||| !:!:||||||!!!.!.|||||| | AsnThrGlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgL 234977 : AACACTCAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGT : 235034 311 : euAlaAspLysAspIleHisAsnLeuMetMetIleIleSerArgSerCysValGluTh : 329 || !! !!||| ! !! !..!|||:!:|||||||||||||||||| !!:!!! !! euProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIl 235035 : TACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGAT : 235091 330 : rLysIleThrAlaGlyLysIleValHisMetSerPheTyrThrLeuAlaSer >>>> : 347 !||||||||||||||||||.!!:!!!!.|||||| !! |||!!!!.!..! eLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAsp++ 235092 : AAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATgt.... : 235147 348 : Target Intron 1 >>>> ValIleLysSerSerPheAlaTyrThrAsnIleLe : 358 71 bp |||.!!|||:!!|||||||||||| !|||!!::! ++ValPheLysAlaSerPheAlaTyrPheAsnMetIl 235148 : .....................agGTATTTAAGGCGTCTTTCGCCTACTTCAACATGAT : 235249 359 : u : 358 ! e 235250 : C : 235251 vulgar: gi|805766376|ref|XP_012135244.1| 290 358 . KQ414889.1 234976 235251 + 157 M 56 168 5 0 2 I 0 67 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234977 235251 157 + . gene_id 23 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234977 235144 . + . KQ414889.1 exonerate:protein2genome:local exon 234977 235144 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 235145 235146 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 235145 235215 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 235214 235215 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 235216 235251 . + . KQ414889.1 exonerate:protein2genome:local exon 235216 235251 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234977 235251 157 + . alignment_id 23 ; Query gi|805766376|ref|XP_012135244.1| ; Align 234977 291 168 ; Align 235216 347 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 294 -> 347 Target range: 244658 -> 244817 295 : CysAsnLysIleGlyGluAlaIleTyrMetSerAsnTrpTyrTyrLeuAlaAspLysA : 314 ||| |||:!!||||||!.!:!!||||||!!!:!!|||||||||||| !!.!.!:! CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgA 244659 : TGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAA : 244716 315 : spIleHisAsnLeuMetMetIleIleSerArgSerCysValGluThrLysIleThrAl : 333 |||! !:!!|||!!::!!||||||!.!|||||| !:!!! ..!:!!|||||||| rgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleThrAl 244717 : GAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCACCGC : 244773 334 : aGlyLysIleValHisMetSerPheTyrThrLeuAlaSerVal : 347 |||||||:!!:!!|||||||||.!!||||||!!!!.!..!||| aGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspVal 244774 : TGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTA : 244817 vulgar: gi|805766376|ref|XP_012135244.1| 294 347 . KQ414889.1 244658 244817 + 154 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244659 244817 154 + . gene_id 24 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244659 244817 . + . KQ414889.1 exonerate:protein2genome:local exon 244659 244817 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244659 244817 154 + . alignment_id 24 ; Query gi|805766376|ref|XP_012135244.1| ; Align 244659 295 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 17 -> 143 Target range: 303196 -> 303565 18 : TyrSerLeuGlnLeuAsnArgTrpLeuLeuLysSerIleGlyAlaTrpProLysSerS : 37 ||| ! !:!!! !!:!!:!|||:!!|||||||||:!!||| !|||||| : TyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTrpPro------A 303197 : TACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTGGCCA------G : 303248 38 : erSerThrThrLysThrGluLeuThrValSerLeuIleLeuThrValIleGlyTyrTh : 56 !! ! ! !:!!|||! ! ! !:!! !! !||| !! !! !:!!.!! !! laValLeuAspGluThrAlaGlyPheLeuProLysIleThrIleGlyLeuSerAsnLe 303249 : CCGTGTTGGACGAAACCGCAGGATTCCTACCAAAAATCACCATTGGACTCAGTAATTT : 303305 57 : rThrIleLeuIleThrValIleProAlaIleLeuGlnLeuIleLeuGlyAspIleAsp : 75 !..!:!!|||.!!||||||||||||..!||||||!!.:!!|||!!!! !.!.! ||| uValLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnLysAsp 303306 : GGTTCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAAAGGAT : 303362 76 : LeuHisThrLysValValLeuValGlyProMetSerHisTrpCysLeuGlyGlyIleG : 95 ! ! !!:!:!! !||| !!|||! !:!!||| !!! ! :!!..! !!!: ThrIleIleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLeuMetL 303363 : ACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTTGATGA : 303422 96 : lyTyrThrMetLeuLeuMetHisAspGluGluIleLysTrpCysValGluArgValLy : 114 !||| ! ||| !! !!.. ! !..!|||||| |||:!!|||..!|||:! ysTyrTrpAlaLeuAlaThrArgLysProArgIleLysGluCysIleGluGluValGl 303423 : AGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAGGTGCA : 303479 115 : sAsnAspTrpArgSerIleMetAsnProGluMetGlnGlnThrMetIleLysAsnAla : 133 !!:!||||||!:!..!:!: !:! ! !!:!!.:::...:::||||||||| nSerAspTrpLysGluVal---SerValCysIleHisArgValLeuIleLysAsnArg 303480 : AAGTGATTGGAAAGAGGTG---AGTGTTTGCATTCATAgagtattaattaaaaatcga : 303533 134 : LysLeuSerArgTyrValValSerLeuCys : 143 :!!||| !||| !|||:!!! !||| ThrValSerLeuTyrTyrValAla***Cys 303534 : actGTTTCATTATATTATGTAGCATAATGC : 303565 vulgar: gi|805766376|ref|XP_012135244.1| 17 143 . KQ414889.1 303196 303565 + 132 M 17 51 G 2 0 M 84 252 G 1 0 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303197 303565 132 + . gene_id 25 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 303197 303565 . + . KQ414889.1 exonerate:protein2genome:local exon 303197 303565 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 303197 303565 132 + . alignment_id 25 ; Query gi|805766376|ref|XP_012135244.1| ; Align 303197 18 51 ; Align 303248 37 252 ; Align 303500 122 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 260 -> 293 Target range: 275207 -> 275306 261 : SerPheIleSerArgIleGluAlaIleMetAsnGluIleCysPheMetGluLeuPheL : 280 |||||||||:!!|||||||||! !:!:||||||..!|||||||||||||||||||||| SerPheIleAlaArgIleGluAspValMetAsnArgIleCysPheMetGluLeuPheL 275208 : AGTTTCATAGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAATTGTTCA : 275265 281 : ysCysThrPheSerIleCysLeuLeuGlyPheAsnIleIle : 293 ||||||||.!...!!!:|||:!!||||||!:! !!|||:!! ysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleLeu 275266 : AGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTCTC : 275306 vulgar: gi|805766376|ref|XP_012135244.1| 260 293 . KQ414889.1 275207 275306 + 128 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 275208 275306 128 + . gene_id 26 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 275208 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275208 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 275208 275306 128 + . alignment_id 26 ; Query gi|805766376|ref|XP_012135244.1| ; Align 275208 261 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 292 -> 356 Target range: 230241 -> 230433 293 : IleLeuCysAsnLysIleGlyGluAlaIleTyrMetSerAsnTrpTyrTyrLeuAlaA : 312 :!!! !|||!..|||:!!|||||| ! ||||||! !.!.|||||| |||.!!! LeuGlnCysArgLysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrG 230242 : TTACAGTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCG : 230299 313 : spLysAspIleHisAsnLeuMetMetIleIleSerArgSerCysValGluThrLysIl : 331 !!. ! ! ! ! !! !!!::!!||||||:!!! !||| ! !..!||||||.! lyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPh 230300 : GAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATT : 230356 332 : eThrAlaGlyLysIleValHisMetSerPheTyrThrLeuAlaSerValIleLysSer : 350 !|||||||||!!.!!:|||.!.:!:||| ! !!|||!!!::!..!|||! !! ! ! eThrAlaGlyAsnMetValGluLeuSerValAsnThrPheSerAspValSerIleIle 230357 : TACAGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGACGTAAGTATCATA : 230413 351 : SerPheAlaTyrThrAsn : 356 ! !! !!.!||||||||| PheSerValTyrThrAsn 230414 : TTCTCTGTTTACACGAAT : 230433 vulgar: gi|805766376|ref|XP_012135244.1| 292 356 . KQ414889.1 230241 230433 + 104 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230242 230433 104 + . gene_id 27 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230242 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230242 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230242 230433 104 + . alignment_id 27 ; Query gi|805766376|ref|XP_012135244.1| ; Align 230242 293 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 294 -> 347 Target range: 301877 -> 302036 295 : CysAsnLysIleGlyGluAlaIleTyrMetSerAsnTrpTyrTyrLeuAlaAspLysA : 314 |||!:!:!!||||||..!||| ||| !! !:!!|||||| !!||| !!! ||| CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysA 301878 : TGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGA : 301935 315 : spIleHisAsnLeuMetMetIleIleSerArgSerCysValGluThrLysIleThrAl : 333 !:!!:!!|||!!::!::!!! ! !! !||| ! ! !!|||:!!||||| rgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAl 301936 : GAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGC : 301992 334 : aGlyLysIleValHisMetSerPheTyrThrLeuAlaSerVal : 347 ||||||||||:!! !!:!:|||!!. !!|||!!!::!|||||| aGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301993 : AGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: gi|805766376|ref|XP_012135244.1| 294 347 . KQ414889.1 301877 302036 + 100 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301878 302036 100 + . gene_id 28 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301878 302036 100 + . alignment_id 28 ; Query gi|805766376|ref|XP_012135244.1| ; Align 301878 295 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1277 Query range: 14 -> 389 Target range: 232447 -> 235153 15 : GlnAspTyrGluTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyValT : 34 !:!|||||||||||||||||||||:!!|||||||||||||||! !|||!!:|||!.!| ArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaT 232448 : CGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCAT : 232505 35 : rpProArgAlaSerThrAlaSerIleAlaGluLysIleLeuAlaIleValLeuAsnVa : 53 ||||||||!.!!!! !.!!|||! !|||:!!:!!:!!||||||! !:!!|||!..:! rpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLe 232506 : GGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACT : 232562 54 : lAlaCysHisValLeuIleIlePheThrPheValProCysLeuLeuPheIleLeuPhe : 72 !.!!|||||| !|||!!:|||! !:!!.!!|||||||||:!!||||||||||||||| uThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPhe 232563 : CACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTC : 232619 73 : GluGluAlaSerPheGlnThrArgIleLysAlaIleGlyProMetSerHisTrpIleM : 92 |||!!:.!!|||.!.:!! !|||!!:|||:!!||||||||||||||||||!:::!:| GluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuM 232620 : GAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGA : 232679 93 : etGlyGluLeuAsnTyrCysPheLeuThrMetArgGlyGlnAspIleLeuHisCysIl : 111 ||||||||||||||||||||! !||| ! !:!!.!.!.|||||||||:!!|||:! etGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysVa 232680 : TGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGT : 232736 112 : eGluHisIleGlySerAspTrpGlnThrValLysArgAlaSerAspArgGluValMet : 130 :|||!!.:!: !..!||||||!:!!.!||||||!:! !! ! !!|||!!::!!||| lGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMet 232737 : GGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATG : 232793 131 : LeuLysAsnValLysPheGlyArgLeuIleAlaCysLeuAlaAlaValGlyMetAsnV : 150 |||||||||!.!|||.!!||||||! !|||||||||:!!|||||| !! !!|||:!!. LeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisT 232794 : TTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACA : 232853 151 : alGlyValPheSer<->TyrIleValIleGlyPheArgLysIleValPheHisValGl : 168 .!|||||| !||| ! ||||||! !|||.!!|||! !! !..!|||:!!||||| hrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGl 232854 : CCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGG : 232910 169 : yAsnGluSerPheLeuMetTyrArgLeuProCysProValTyrThrLysLeuLeuAsn : 187 ||||||||||!:!! !||||||! !||||||||| !! !!||||||||||||:!!:!! yAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAsp 232911 : GAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGAC : 232967 188 : ValLysLeuSerProAlaAsnGluIleValPheAlaLeuGlnValLeuSerGlyPheI : 207 ..!!:!!!!||||||.!!|||||||||:!!|||!.!|||||| !||||||||||||| ThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheI 232968 : ACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCA : 233027 208 : leValAsnSerValThrValGlyAlaCysGlyLeuAlaAlaIleLeuAlaMetHisAl : 226 |||||||||||||||||||||||||||||||||||!.!|||:!!|||||||||||||| leValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAl 233028 : TCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGC : 233084 227 : aCysGlyGlnLeuAsnValMetMetSerArgMetAspGluLeuValGlyAlaGlyVal : 245 |||||||||||||||||||:!!||||||!:!:!!|||!!:||||||! !||| !! ! aCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGly 233085 : GTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGG : 233141 246 : GluGluGlnArgValValLysLysLysLeuAlaAspIleValGluHisHisLeuArgT : 265 :!!|||:!!||||||!.!:!!!:!||||||!.! !|||||||||||||||||||||| GlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgT 233142 : CAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTA : 233201 266 : hrLeu{Se} >>>> Target Intron 1 >>>> {r}PheValTrpTyrIleGl : 273 |||||{||} 1315 bp {|}|||:!! !! !!||||| hrLeu{Se}++ ++{r}PheIleArgAsnIleGl 233202 : CATTA{AG}gt.........................ag{T}TTTATACGGAATATAGA : 234540 274 : uLysIleMetAsnLeuIleCysLeuValGluLeuValGlyCysThrValAsnIleCys : 292 |!!.:!!|||||||||||||||||||||||||||||||||||||||:!!|||!!:||| uAsnValMetAsnLeuIleCysLeuValGluLeuValGlyCysThrLeuAsnMetCys 234541 : GAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACGTTGAACATGTGC : 234597 293 : ValLeuGluTyrTyrIleIleThr >>>> Target Intron 2 >>>> GluLy : 302 :!!||||||||||||:!!:!!||| 189 bp ||||| MetLeuGluTyrTyrLeuLeuThr++ ++GluLy 234598 : ATGCTCGAGTATTATTTACTCACGgt.........................agGAAAA : 234816 303 : sSerLysAspThrLeuAlaSerTyrAlaIleIleTyrAlaSerMetSerPheAsnIle : 321 |||||||::: ||||||||||||!.!|||:!:|||!.!||||||!!!||||||||| sSerLysGluLysLeuAlaSerTyrValIleValTyrValSerMetThrPheAsnIle 234817 : gtcgaaggaaaaattagCTTCATACGTCATCGTGTACGTGTCCATGACATTtaatata : 234873 322 : PheIlePheCysTyrIleGlyGluArgLeuThrGluGln >>>> Target Intro : 335 ||||||||||||||||||||||||! !|||||||||||| 74 bp PheIlePheCysTyrIleGlyGluThrLeuThrGluGln++ 234874 : ttcatattttgttACATCGGAGAGACGCTTACAGAGCAGgt................. : 234917 336 : n 3 >>>> CysLysLysValGlyGluLysAlaTyrSerValGluTrpTyrArgLeu : 350 |||! |||||||||||||||!.!|||! !..!||||||||||||||| ++CysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeu 234918 : ........agTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTA : 235034 351 : SerHisArgThrAlaLeuSerLeuValMetIleIleSerArgSerSerMetValIleL : 370 !!|||!:!|||||||||.!!||||||||||||||||||||||||||||||||||||| ProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleL 235035 : CCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAA : 235094 371 : ysIleThrAlaGlyLysIleIleArgIleSerLeuAlaThrPheGlyAspValSerIl : 389 |||||||||||||||||.!!:!!!:!!!:|||:!!||||||||||||||||||||||| ysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspValSerIl 235095 : AAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTGAGTAT : 235151 390 : e : 389 | e 235152 : T : 235153 vulgar: gi|805766364|ref|XP_012135240.1| 14 389 . KQ414889.1 232447 235153 + 1277 M 140 420 G 0 3 M 112 336 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 33 99 5 0 2 I 0 185 3 0 2 M 34 102 5 0 2 I 0 70 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232448 235153 1277 + . gene_id 1 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232448 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232448 233208 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235153 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235153 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232448 235153 1277 + . alignment_id 1 ; Query gi|805766364|ref|XP_012135240.1| ; Align 232448 15 420 ; Align 232871 155 336 ; Align 234525 268 99 ; Align 234813 301 102 ; Align 234989 335 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 776 Query range: 2 -> 393 Target range: 256604 -> 258642 3 : SerSerAspLysLeuIleThrAsnThrArgTyrLeuGlnAspTyrGluTyrSerIleG : 22 !!!!:!!!: !:!:..!!!.|||!.!!:! !... !! !!!:||||||:!!| ThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerLeuG 256605 : ACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTCTCC : 256662 23 : lnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProArgAlaSerThrAlaSe : 41 ||||||||||||||||||||||||||||||||!.!||||||! !:!!|||:!!.!!!! lnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerThrTh 256663 : AGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCACTAC : 256719 42 : rIleAlaGluLysIleLeuAlaIleValLeuAsnValAlaCysHisValLeuIleIle : 60 !! ! !|||::!! !:!!:!!||||||||||||:!!!.!|||:!!! !! !|||:!: rThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIleLeu 256720 : AACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATATTG : 256776 61 : PheThrPheValProCysLeuLeuPheIleLeuPheGluGluAlaSerPheGlnThrA : 80 ||||||!!.:!!|||||||||||| !:!!!!!.!!!!:!!:! !|||||| ! : PheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrMetL 256777 : TTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAcatga : 256836 81 : rgIleLysAlaIleGlyProMetSerHisTrpIleMetGlyGluLeuAsnTyrCysPh : 99 :::::||| ...|||||||||||||||||||||!!:.!! !|||||| !! ysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrThrLe 256837 : aagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACACGTT : 256893 100 : eLeuThrMetArgGlyGlnAspIleLeuHisCysIleGluHisIleGlySerAspTrp : 118 .||| !:!:!:!|||:!!||||||! !:!!|||:!!|||||||||! !!!!|||||| uLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAspTrp 256894 : GCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGATTGG : 256950 119 : GlnThrValLysArgAlaSerAspArgGluValMetLeuLysAsnValLysPheGlyA : 138 ::!! !|||!:!|||! !!.!|||!:!:!!||||||:!!||||||!.!!:!||||||| ArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheGlyA 256951 : AGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCGGTC : 257010 139 : rgLeuIleAlaCysLeuAlaAlaValGlyMetAsnValGlyValPheSerTyrIleVa : 157 ||! !:!:||| !!!..!|||!.! !|||.!. !||||||||| :::...|| rgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePheVa 257011 : GTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttcttcgt : 257067 158 : l<->IleGlyPheArgLysIleValPheHisValGlyAsnGluSerPheLeuMetTyr : 175 | !.!.!.!.!! ! :!!.!!|||||||||||||||!!! :!!:!! lSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleValArg 257068 : GTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTGCGA : 257124 176 : ArgLeuProCysProValTyrThrLysLeuLeuAsnValLysLeuSerProAlaAsnG : 195 !|||||| ! !!||||||! !||||||||||||||| ! ! !||||||.!!|||| ValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrAsnG 257125 : GTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACG : 257184 196 : luIleValPheAlaLeuGlnValLeuSerGlyPheIleValAsnSerValThrValGl : 214 |||||||| !! !:!!|||..!! !|||..!.!!|||!.!!.!!!! !||||||.! luIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrValSe 257185 : AGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAG : 257241 215 : yAlaCysGlyLeuAlaAlaIleLeuAlaMetHisAlaCysGlyGlnLeuAsnValMet : 233 ! !! !.!!|||||||||:!!!!!|||! ||||||! !|||||||||!.!|||:!: rIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrValLeu 257242 : TATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTT : 257298 234 : MetSerArgMetAspGluLeuValGlyAlaGlyValGluGluGlnArgValValLys< : 253 |||||| !!!!: |||!!!|||..!! !..! !.!....::::::... MetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheProP 257299 : ATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttcctt : 257358 254 : ->LysLysLeuAlaAspIleValGluHisHisLeuArgThrLeuSerPheValTrpTy : 271 |||:!!:!!!.!! |||||||||||||||||||||..!|||!!!! ! !!::! heLysGlnIleGlyValIleValGluHisHisLeuArgValLeuArg***AspPheCy 257359 : tCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTGAGGTAAGATTTTTG : 257415 272 : rIleGluLysIleMetAsnLeuIleCysLeuValGluLeuValGlyCysThrValAsn : 290 ! |||!!:::!:!!:!:!! ! !!||| !|||..! ! !:!! ! s---------IleIleSerValValTrpAsnPheGluArgValSerValIleIlePhe 257416 : C---------ATTATTTCCGTTGTGTGGAATTTCGAAAGGGTTTCTGTGATTATTTTT : 257463 291 : IleCysValLeuGluTyrTyrIleIleThrGluLys{S} >>>> Target Intro : 303 ||| !|||:!!!:!:!!|||||| !..! !{!} 778 bp AlaCys***LeuGlnPheHisIleIleTyrArgGly{A}++ 257464 : GCGTGTTAATTGCAGTTTCATATCATATATCGAGGA{A}gt................. : 257505 304 : n 1 >>>> {er}LysAspThrLeuAlaSerTyrAlaIleIleTyrAlaSerMetSe : 318 {:!} ......|||:::|||||| !!!:||| ! !|||:::|| ++{sn}IleGlnAsnLeuSerSerTyrPheMetIleLeuIleSerLeuSe 257506 : ........ag{at}attcaaaatttgagttcgtaCTTTATGATACTCATATcactttc : 258325 319 : rPheAsnIlePheIlePheCysTyrIleGlyGluArgLeuThrGluGln >>>> Ta : 335 |||||||||||||:::...|||||||||||||||! !|||||||||||| rPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluGln++ 258326 : tttcaatatttttgtaatatgttACATAGGTGAAATATTAACAGAACAGgt....... : 258378 336 : rget Intron 2 >>>> CysLysLysValGlyGluLysAlaTyrSerValGluTr : 347 90 bp |||||||||||||||!!: !!.!|||! !..!!!:|| ++CysLysLysValGlyAspValValTyrMetThrAspTr 258379 : ..................agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTG : 258502 348 : pTyrArgLeuSerHisArgThrAlaLeuSerLeuValMetIleIleSerArgSerSer : 366 |||| !||| !! !!!:!! ! !|||..!|||:!!:!!:!!|||:!!||||||||| pTyrTyrLeuProAspLysArgIleLeuAspLeuIleLeuValIleAlaArgSerSer 258503 : GTATTATCTACCTGACAAAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGC : 258559 367 : MetValIleLysIleThrAlaGlyLysIleIleArgIleSerLeuAlaThrPheGlyA : 386 :!!|||:!!:!!|||||||||||||||.........:::|||:!! !||||||.!!| ValValValGlnIleThrAlaGlyLysPhePheHisMetSerIleTyrThrPheSerA 258560 : GTGGTCGTTCAAATCACCGCGggaaaattctttcacatGTCCATTTACACATTCAGCG : 258619 387 : spValSerIleLysThrLeuIle : 393 |||||||| ! !|||||| spValSerTyrLeuArgLeuIle 258620 : ATGTGAGTTATCTTCGTTTGATT : 258642 vulgar: gi|805766364|ref|XP_012135240.1| 2 393 . KQ414889.1 256604 258642 + 776 M 155 465 G 0 3 M 95 285 G 0 3 M 19 57 G 3 0 M 28 84 S 0 1 5 0 2 I 0 774 3 0 2 S 1 2 M 31 93 5 0 2 I 0 86 3 0 2 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256605 258642 776 + . gene_id 2 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256605 257502 . + . KQ414889.1 exonerate:protein2genome:local exon 256605 257502 . + . insertions 6 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 257503 257504 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257503 258280 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258279 258280 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258281 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258281 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258642 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258642 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256605 258642 776 + . alignment_id 2 ; Query gi|805766364|ref|XP_012135240.1| ; Align 256605 3 465 ; Align 257073 158 285 ; Align 257361 253 57 ; Align 257418 275 84 ; Align 258283 304 93 ; Align 258466 335 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 723 Query range: 5 -> 389 Target range: 208173 -> 211938 6 : LysLeuIleThrAsnThrArgTyrLeuGlnAspTyrGluTyrSerIleGlnLeuAsnA : 25 :!!:!!.!! !|||! !!.!||| !.!.||| ...!:!!:!:!!!::|||||| GlnIlePheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnV 208174 : CAAATATTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACG : 208231 26 : rgTrpPheLeuLysProIleGlyValTrpProArgAlaSerThrAlaSerIleAlaGl : 44 !||| |||||| !|||||| !|||||||||:!!! ! ! !||| !|| alTrpThrLeuLysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGl 208232 : TGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGA : 208288 45 : uLysIleLeuAlaIleValLeuAsnValAlaCysHisValLeuIleIlePheThrPhe : 63 |!!.! !! ! !|||:!!||||||||| ! !!||| !|||:!! !|||! ! ! uAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleVal 208289 : GAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTG : 208345 64 : ValProCysLeuLeuPheIleLeuPheGluGluAlaSerPheGlnThrArgIleLysA : 83 :!!||| ! !:!!||| :!!.!!! !! ! !..!||| ! !!:!:!!||| IleProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysI 208346 : ATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGA : 208405 84 : laIleGlyProMetSerHisTrpIleMetGlyGluLeuAsnTyrCysPheLeuThrMe : 102 ! !.!! !!:!!||| !!::!!:|||!.! !!!.||| .!!:!!|||:! leCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrVa 208406 : TCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGT : 208462 103 : tArgGlyGlnAspIleLeuHisCysIleGluHisIleGlySerAspTrpGlnThrVal : 121 :|||! ! ||||||! ! ! |||:!!|||:!!:!!! !:!!||||||::!!.!||| lArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnVal 208463 : CCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTG : 208519 122 : LysArgAlaSerAspArgGluValMetLeuLysAsnValLysPheGlyArgLeuIleA : 141 :!!!.!! !..!||||||:!!:!!|||||| ! |||!.!!..|||!.!||| !:!: GluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuI 208520 : GAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGA : 208579 142 : laCysLeuAlaAlaValGlyMetAsnValGlyVal<->PheSerTyrIleValIleGl : 159 ! :!!..!!.!!.! !||| !!! !|||||| ||| ||||||!.!:!: leValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuPr 208580 : TCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCC : 208636 160 : yPheArgLysIleValPheHisValGlyAsnGluSerPheLeuMetTyrArgLeuPro : 178 !.!!! !::! ! ! !! !! !! !..!! !:!!!. ! |||||| ! oLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuVal 208637 : GCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTT : 208693 179 : CysProValTyrThrLysLeuLeuAsnValLysLeuSerProAlaAsnGluIleValP : 198 ! !|||||| !! ! :!!|||:!!|||::!! !||||||!.!||||||||| !!! TyrProValProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheT 208694 : TATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTT : 208753 199 : heAlaLeuGlnValLeuSerGlyPheIleValAsnSerValThrValGlyAlaCysGl : 217 :!.!!:!!|||:!!||||||||||||:!!!.!:!!!:!:!!||||||||||||||||| yrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGl 208754 : ATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGG : 208810 218 : yLeuAlaAlaIleLeuAlaMetHisAlaCysGlyGlnLeuAsnValMetMetSerArg : 236 ||||||||||:!:|||||||||||||||||||||||||||.!.:!!:!!|||||| !! yLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrp 208811 : TTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGG : 208867 237 : MetAspGluLeuValGlyAlaGlyValGluGluGlnArgValValLysLysLysLeuA : 256 |||!!::!!||||||! !!.! !!! !!!:|||:!!!:! !:!! ! :!!!:!|||| MetGluLysLeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuA 208868 : ATGGAGAAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGG : 208927 257 : laAspIleValGluHisHisLeuArgThrLeu{Se} >>>> Target Intron 1 : 267 ||:!!|||||||||!!.|||:!!|||..!:!!{!:} 1536 bp laAsnIleValGluGlnHisValArgValIle{As}++ 208928 : CTAATATCGTGGAGCAGCATGTTCGAGTGATC{AA}gt.................... : 208964 268 : >>>> {r}PheValTrpTyrIleGluLysIleMetAsnLeuIleCysLeuValGlu : 283 {!}|||:!! ! !|||!!.:!!:!!:!! !|||! |||:!!||| ++{n}PheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGlu 208965 : .....ag{T}TTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAA : 210544 284 : LeuValGlyCysThrValAsnIleCysValLeuGluTyrTyrIleIleThr >>>> : 301 :!!||||||||||||:!!|||!!:||| !!|||! ||||||! !!:! ! MetValGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210545 : ATGGTGGGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt..... : 210600 302 : Target Intron 2 >>>> Glu<->LysSerLysAspThrLeuAlaSer<-><-> : 310 66 bp ||| ! ||||||||| !!:!!::!||| ++GluTrpAspSerLysAspProIleSerSerLeuThr 210601 : ....................agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACG : 210697 311 : TyrAlaIleIleTyrAlaSerMetSerPheAsnIlePheIlePheCysTyrIleGlyG : 329 ||| !:!!:!! !.!!|||:!:!!!||||||||||||||||||||||||||||||| TyrIleValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyG 210698 : TACATAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTG : 210757 330 : luArgLeuThrGluGln >>>> Target Intron 3 >>>> CysLysLysVal : 338 || !|||.!!|||||| 999 bp !|||||| luValLeuAlaGluGln++ ++ThrValLysVal 210758 : AAGTGTTGGCTGAACAggt.........................agACAGTAAAAGTT : 211783 339 : GlyGluLysAlaTyrSerValGluTrpTyrArgLeuSerHisArgThrAlaLeuSerL : 358 |||||||||:!!|||! !:!!!!:|||||||||:!! !! !:!! !!.!||| !: GlyGluLysSerTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValV 211784 : GGAGAAAAGTCTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCG : 211843 359 : euValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysIleIl : 377 !! !:!!!!:||||||! !||| ! !..!! !|||||||||||||||!!.:!!|| alProLeuMetIleSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIl 211844 : TACCCTTGATGATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCAT : 211900 378 : eArgIleSerLeuAlaThrPheGlyAspValSerIle : 389 | !:!!|||:!!::!!:!|||||||||||||||::: eValLeuSerIleSerSerPheGlyAspValSerVal 211901 : CGTTCTTTCAATCAGTAGTTTCGGTGACGTAAGtgtt : 211938 vulgar: gi|805766364|ref|XP_012135240.1| 5 389 . KQ414889.1 208173 211938 + 723 M 147 441 G 0 3 M 114 342 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 1 3 G 0 3 M 8 24 G 0 6 M 25 75 5 0 2 I 0 995 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208174 211938 723 + . gene_id 3 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208174 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208174 208961 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211938 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211938 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208174 211938 723 + . alignment_id 3 ; Query gi|805766364|ref|XP_012135240.1| ; Align 208174 6 441 ; Align 208618 153 342 ; Align 210499 268 99 ; Align 210664 301 3 ; Align 210670 302 24 ; Align 210700 310 75 ; Align 211774 335 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 680 Query range: 5 -> 389 Target range: 226891 -> 230412 6 : LysLeuIleThrAsnThrArgTyrLeuGlnAspTyrGluTyrSerIleGlnLeuAsnA : 25 ...||| |||.!.!.! !|||! !:!! !!! .!. |||||||||||||||| SerLeuAlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnA 226892 : TCTCTCGCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATC : 226949 26 : rgTrpPheLeuLysProIleGlyValTrpProArgAlaSerThrAlaSerIleAlaGl : 44 |||||.!.|||||||||:!!|||:!!|||||| !:!! !!! !::!||| ! !! rgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGl 226950 : GTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGG : 227006 45 : uLysIleLeuAlaIleValLeuAsnValAlaCysHisValLeuIleIlePheThrPhe : 63 !!:! !!!!:!! :!!:!!..! !! !|||:!!!.!|||!!:! !||| !!!. yArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeu 227007 : AAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTG : 227063 64 : ValProCysLeuLeuPheIleLeuPheGluGluAlaSerPheGlnThrArgIleLysA : 83 ||| !! !! !|||!:!:!::!!.!.|||! ! !.!! ! ! !.!! !:!:||| ValSerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysM 227064 : GTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAA : 227123 84 : laIleGlyProMetSerHisTrpIleMetGlyGluLeuAsnTyrCysPheLeuThrMe : 102 !||||||||||||||| !!:: |||..! |||!!.|||! !.!.||||||.! etIleGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPh 227124 : TGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTT : 227180 103 : tArgGlyGlnAspIleLeuHisCysIleGluHisIleGlySerAspTrpGlnThrVal : 121 .!.!! !.!.|||||||||.!.|||:!!|||!..||| !!!!||||||:!!!.!:!! eHisGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIle 227181 : CCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATC : 227237 122 : LysArgAlaSerAspArgGluValMetLeuLysAsnValLysPheGlyArg<->LeuI : 140 !:! ! !..!||||||.!.||||||:!!! ! !!!.! ! !:!|||||| |||| ArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuI 227238 : AGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGA : 227297 141 : leAlaCysLeuAlaAlaValGlyMetAsnValGlyValPheSerTyrIleValIleGl : 159 ||.!! !! !.!! ! !!! !.!.!:: |||||| |||||||||:!! leThrIleCysThrPhePheValPheSerSerPheValPhePheTyrIleValValPr 227298 : TCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACC : 227354 160 : yPheArgLysIleValPheHisValGlyAsnGluSerPheLeuMetTyrArgLeuPro : 178 !.!!!.! ! ! !! ..!! !:!!! !!:! ! ! !!:!:!!||| oIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetPro 227355 : TATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCG : 227411 179 : CysProValTyrThrLysLeuLeuAsnValLysLeuSerProAlaAsnGluIleValP : 198 ! !||| !! ! !! :!! !:!!|||:::! !|||||| !||||||||| !!| PheProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIlePheP 227412 : TTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCT : 227471 199 : heAlaLeuGlnValLeuSerGlyPheIleValAsnSerValThrValGlyAlaCysGl : 217 ||:!!:!!||| !!:!!!!!|||.!!:!::!!:!!.!!|||||| !!.!||||||.! heSerValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSe 227472 : TTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAG : 227528 218 : yLeuAlaAlaIleLeuAlaMetHisAlaCysGlyGlnLeuAsnValMetMetSerArg : 236 !:!!||||||:!:||||||:!:|||||||||||||||:!!.!.|||:!!:!!||| !! rMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrp 227529 : TATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGG : 227585 237 : MetAspGluLeuValGlyAlaGlyValGluGluGlnArgValValLysLysLysLeuA : 256 :!!! .!.|||:!!! !!.! !!!.!!!: !...!:!..!:!! ! ! !:!:!!| LeuGlyHisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAspAspArgIleA 227586 : CTGGGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCG : 227645 257 : laAspIleValGluHisHisLeuArgThrLeu{Se} >>>> Target Intron 1 : 267 ||..!|||||| ||||||:!!|||! !|||{!:} 396 bp laSerIleValThrHisHisValArgIleLeu{As}++ 227646 : CTAGCATCGTCACTCACCACGTTCGAATATTG{AA}gt.................... : 227682 268 : >>>> {r}PheValTrpTyrIleGluLysIleMetAsnLeuIleCysLeuValGlu : 283 {!}|||:!! !|||||||||! !|||.!.! !|||..!!!!|||||| ++{n}PheLeuAlaLeuIleGluLysThrMetGlnGlnIleAlaPheValGlu 227683 : .....ag{C}TTTCTGGCCCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAA : 228122 284 : LeuValGlyCysThrValAsnIleCysValLeuGluTyrTyrIleIleThr >>>> : 301 !!!:!!|||||||||:!!! !:!:|||:!!:!!|||||||||||||||||| PheLeuGlyCysThrIleIleLeuCysLeuIleGluTyrTyrIleIleThr++ 228123 : TTTTTAGGGTGTACAATAATTCTGTGCCTCATCGAGTATTACATCATAACGgt..... : 228178 302 : Target Intron 2 >>>> GluLysSerLysAspThrLeuAlaSerTyrAlaIle : 312 81 bp !|||..! ! ! !!.!!!!|||:!! +-ProLysGluLeuThrPheAlaValThrTyrSerAla 228179 : ....................atCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCG : 228290 313 : IleTyrAlaSerMetSerPheAsnIlePheIlePheCysTyrIleGlyGluArgLeuT : 332 :!! ! !|||.!.!::|||||||||||||||||||||||||||||||||! !:!!. LeuLeuLeuSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValA 228291 : TTACTTTTATCCTTTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTG : 228350 333 : hrGluGln >>>> Target Intron 3 >>>> CysLysLysValGlyGluLys : 341 !!|||!!. 1889 bp |||!:!||||||||||||||| laGluHis++ ++CysArgLysValGlyGluLys 228351 : CCGAACACgt.........................agTGCAGAAAAGTCGGCGAAAAG : 230266 342 : AlaTyrSerValGluTrpTyrArgLeuSerHisArgThrAlaLeuSerLeuValMetI : 361 :!!|||! !:!!|||||||||||||||!!! !.!! ! !|||!!!! !:!!:!!| SerTyrMetIleGluTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuI 230267 : TCGTACATGATCGAATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGA : 230326 362 : leIleSerArgSerSerMetValIleLysIleThrAlaGlyLysIleIleArgIleSe : 380 |||||:!!! !|||!:! !! |||.!!|||||||||!!.!!::!!..!:!!|| leIleAlaMetSerAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSe 230327 : TCATCGCCATGTCCAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATC : 230383 381 : rLeuAlaThrPheGlyAspValSerIle : 389 |:!! !||||||.!!|||||||||||| rValAsnThrPheSerAspValSerIle 230384 : CGTAAACACTTTCAGCGACGTAAGTATC : 230412 vulgar: gi|805766364|ref|XP_012135240.1| 5 389 . KQ414889.1 226891 230412 + 680 M 133 399 G 0 3 M 128 384 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 77 3 0 2 M 34 102 5 0 2 I 0 1885 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226892 230412 680 + . gene_id 4 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226892 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226892 227679 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228256 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228255 228256 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 228257 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228257 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230412 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230412 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226892 230412 680 + . alignment_id 4 ; Query gi|805766364|ref|XP_012135240.1| ; Align 226892 6 399 ; Align 227294 139 384 ; Align 228077 268 99 ; Align 228257 301 102 ; Align 230248 335 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 648 Query range: 8 -> 392 Target range: 284493 -> 287237 9 : ThrAsnThrArgTyrLeuGlnAspTyrGluTyrSerIleGlnLeuAsnArgTrpPheL : 28 |||:!!:!!! !!:: ! !|||!:: !||||||:!!|||:!!||||||||||||| ThrAspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheL 284494 : ACCGATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTC : 284551 29 : euLysProIleGlyValTrpProArgAlaSerThrAlaSerIleAlaGluLysIleLe : 47 |||||||||||||||||||||||! !::! ! !!.!!!!! ! !||||||||| euLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSe 284552 : TCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAG : 284608 48 : uAlaIleValLeuAsnValAlaCysHisValLeuIleIlePheThrPheValProCys : 66 !:!!:!:|||||| :!! ! !! ! !!|||||| !||| !!!.||||||||| rSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCys 284609 : TTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGC : 284665 67 : <->LeuLeuPheIleLeuPheGluGluAlaSerPheGlnThrArgIleLysAlaIleG : 85 |||! ! :!:||| !:!! !.!..!.!!.!.|||!:!|||||| !|||| AlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleG 284666 : GCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCG : 284725 86 : lyProMetSerHisTrpIleMetGlyGluLeuAsnTyrCysPheLeuThrMetArgGl : 104 |||||:!!||| !!! !!:|||!.!! !:!!!!.|||! !.!!|||! ! !||||| lyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGl 284726 : GTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGG : 284782 105 : yGlnAspIleLeuHisCysIleGluHisIleGlySerAsp{Tr} >>>> Target : 118 | ! ||| !!!.|||:!::!! !!||| !!:!!|||{||} 101 yGlyLysIleGlyGlnCysValLysAspIleArgAlaAsp{Tr}++ 284783 : CGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGAC{TG}gt............ : 284828 119 : Intron 1 >>>> {p}GlnThrValLysArgAlaSerAspArgGluValMetLeuL : 132 2 bp {|}! :!! !!..::: ...:::||||||:::||| ! +-{p}LeuSerHisSerGlnGluGluGluArgGluIleMetArgA 284829 : .............ac{G}CTTTCGCATAGtcaagaagaggagagagagatcaTGAGGG : 285878 133 : ysAsnValLysPheGlyArgLeuIleAlaCysLeuAlaAlaValGlyMetAsnValGl : 151 ! !:!!.!!:!.!!||||||! !:!:||| !!!!..!|||! ! !||| !! !|| spSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGl 285879 : ACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGG : 285935 152 : yValPheSerTyrIleValIleGlyPheArgLysIleValPheHisValGlyAsnGlu : 170 |! !|||! !|||! !..!:!: ! ! ! !||| ! ! ! !! !!!: yGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIleAsp 285936 : AGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGAC : 285992 171 : SerPheLeuMetTyrArgLeuProCysProValTyrThrLysLeuLeuAsnValLysL : 190 !:! !:!! !! ! !!! !|||:!!||| ! ||||||:!! !::: AsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgT 285993 : AACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTA : 286052 191 : euSerProAlaAsnGluIleValPheAlaLeuGlnValLeuSerGlyPheIleValAs : 209 !||||||:!! !||||||||| !:!!||| !|||:!!!.!|||:!!:!! ! hrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTy 286053 : CCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATA : 286109 210 : nSerValThrValGlyAlaCysGlyLeuAlaAlaIleLeuAlaMetHisAlaCysGly : 228 !|||||||||||||||||||||.!!|||||||||:!:!!!!.!||||||!.!|||||| rSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGly 286110 : CTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGA : 286166 229 : GlnLeuAsnValMetMetSerArgMetAspGluLeuValGlyAla<-><->GlyValG : 246 |||!!!!..:!!:!::!!!!!!:!:!!|||:!!||||||! !!.! ||| !: GlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLysGlyArgL 286167 : CAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGAGGA : 286226 247 : luGluGlnArgValValLysLysLysLeuAlaAspIleValGluHisHisLeuArgTh : 265 !!! ! !!!!..! !:!!:!!::!|||!.!||||||:!!||||||||||||!:!! ysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLysIl 286227 : AGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGAT : 286283 266 : rLeu{Se} >>>> Target Intron 2 >>>> {r}PheValTrpTyrIleGlu : 273 !|||{.!} 408 bp {!}|||:!!! ! ! |||||| eLeu{Gl}++ ++{y}PheIleSerGlnIleGlu 286284 : ACTG{GG}gt.........................ag{T}TTTATATCGCAAATCGAG : 286715 274 : LysIleMetAsnLeuIleCysLeuValGluLeuValGlyCysThrValAsnIleCysV : 293 !:!!:!:||| !||||||!!!||||||:!!:!!|||||||||:!!||||||||| GlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsnIleCysP 286716 : GGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCT : 286775 294 : alLeuGluTyrTyrIleIleThr >>>> Target Intron 3 >>>> GluLys : 302 !!|||! !||||||:!!:!:||| 89 bp :!!!.. heLeuGlyTyrTyrLeuLeuThr++ ++GlnSer 286776 : TTTTGGGATATTATTTACTGACGgt.........................agCAAAGT : 286891 303 : SerLysAspThrLeuAlaSerTyrAlaIleIleTyrAlaSerMetSerPheAsnIleP : 322 ..!! ! ! !!!!|||..!! :!: !.!|||.!.!!!||||||:!!| GluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerPheThrPheAsnValP 286892 : GAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTT : 286951 323 : heIlePheCysTyrIleGlyGluArgLeuThrGluGln >>>> Target Intron : 335 |||||.!!|||||||||||||||! !|||:!!|||||| 74 bp heIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286952 : TCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt.................. : 286992 336 : 4 >>>> CysLysLysValGlyGluLysAlaTyrSerValGluTrpTyrArgLeuS : 351 ||| !||||||||| !..!.!!|||! !:!!!!:|||||||||||| ++CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuP 286993 : .......agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGC : 287112 352 : erHisArgThrAlaLeuSerLeuValMetIleIleSerArgSerSerMetValIleLy : 370 !! !:!||||||! !.!!|||:!!:!!|||.!!:!! !|||!:! !||||| roGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLy 287113 : CAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAA : 287169 371 : sIleThrAlaGlyLysIleIleArgIleSerLeuAlaThrPheGlyAspValSerIle : 389 |:!!|||||||||||||||||| !:!!||||||::!!:!||| !!..!||||||||| sLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIle 287170 : ATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATC : 287226 390 : LysThrLeu : 392 ! !!.!||| IleAsnLeu 287227 : ATAAATTTA : 287237 vulgar: gi|805766364|ref|XP_012135240.1| 8 392 . KQ414889.1 284493 287237 + 648 M 58 174 G 0 3 M 51 153 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 125 375 G 0 6 M 23 69 S 0 2 5 0 2 I 0 404 3 0 2 S 1 1 M 33 99 5 0 2 I 0 85 3 0 2 M 34 102 5 0 2 I 0 70 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284494 287237 648 + . gene_id 5 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284494 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284494 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286698 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286887 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 286886 286887 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286888 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286888 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 4 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 3 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287237 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287237 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284494 287237 648 + . alignment_id 5 ; Query gi|805766364|ref|XP_012135240.1| ; Align 284494 9 174 ; Align 284671 67 153 ; Align 285839 119 375 ; Align 286220 244 69 ; Align 286700 268 99 ; Align 286888 301 102 ; Align 287064 335 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 602 Query range: 2 -> 266 Target range: 266589 -> 267387 3 : SerSerAspLysLeuIleThrAsnThrArgTyrLeuGlnAspTyrGluTyrSerIleG : 22 :!!!:!!!:..!|||:!!! !.!..!!!.! !... !!!:||||||:!:| AlaAsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerLeuG 266590 : GCTAACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCCTGC : 266647 23 : lnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProArgAlaSerThrAlaSe : 41 ||||||||||||||||||||||||||||||||!.!||||||! ! !||| !.!!|| lnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuThrSe 266648 : AATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCACATC : 266704 42 : rIleAlaGluLysIleLeuAlaIleValLeuAsnValAlaCysHisValLeuIleIle : 60 |! ! !|||::!|||:!!:!! !!.!|||! !||| !|||:!! !! !|||:!: rLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIleLeu 266705 : TAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATACTG : 266761 61 : PheThrPheValProCysLeuLeuPheIleLeuPheGluGluAlaSerPheGlnThrA : 80 |||||| ! :!!|||||||||!!! !:!!:!!.!.|||!!:! !|||.!!!::|||! PheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgThrL 266762 : TTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTACGA : 266821 81 : rgIleLysAlaIleGlyProMetSerHisTrpIleMetGlyGluLeuAsnTyrCysPh : 99 :!:!:|||!.!.!!||||||:!!|||||||||.!!:!:|||! !:!!|||||| ! ysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrThrTh 266822 : AAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACACCAC : 266878 100 : eLeuThrMetArgGlyGlnAspIleLeuHisCysIleGluHisIleGlySerAspTrp : 118 ||| !:!:|||.!!:!!!!:|||! ! !|||:!!||||||!!: !!!!|||||| rLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrp 266879 : ACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGATTGG : 266935 119 : GlnThrValLysArgAlaSerAspArgGluValMetLeuLysAsnValLysPheGlyA : 138 ::!! !|||! ||| !!..!|||!:!:!!|||||||||||||||!.!!:!.!!|||| ArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleGlyA 266936 : AGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCGGTC : 266995 139 : rgLeuIleAlaCysLeuAlaAlaValGlyMetAsnValGlyValPheSerTyrIleVa : 157 ||! !|||||| !!!..!|||!.! !|||.!. !||||||.!!.!!||| !|| rgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCysVa 266996 : GTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGT : 267052 158 : lIle<->GlyPheArgLysIleValPheHisValGlyAsnGluSerPheLeuMetTyr : 175 |||| !.!|||! !! ! ..! ! .!.||||||||||||!!! :!!:!::!! lIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleValHis 267053 : GATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTACAT : 267109 176 : ArgLeuProCysProValTyrThrLysLeuLeuAsnValLysLeuSerProAlaAsnG : 195 ! !||||||||| !!||||||! !|||:!!:!! ||| ! !||||||.!!|||| LeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrAsnG 267110 : CTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGAACG : 267169 196 : luIleValPheAlaLeuGlnValLeuSerGlyPheIleValAsnSerValThrValGl : 214 ||||||||.!!!.!! !||| !!:!!||||||||||||||||||||| !..!||||| luIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValValGl 267170 : AGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCGG : 267226 215 : yAlaCysGlyLeuAlaAlaIleLeuAlaMetHisAlaCysGlyGlnLeuAsnValMet : 233 ||||! !.!!|||||||||:!:!!!||| ||||||||||||||||||!:!|||:!! yAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerValLeu 267227 : TGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTG : 267283 234 : MetSerArgMetAspGluLeuValGlyAlaGlyValGluGluGlnArg<->ValValL : 252 |||! ! !!!!: ! |||!!!|||..! !..! !!!:....!.!:! ||| ! MetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValCysP 267284 : ATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTTGCT : 267343 253 : ysLysLysLeuAlaAspIleValGluHisHisLeuArgThrLeu : 266 ! |||:!!!.!! :!!||||||||||||||||||..!||| heAspLysIleGlyValValValGluHisHisLeuArgValLeu 267344 : TCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG : 267387 vulgar: gi|805766364|ref|XP_012135240.1| 2 266 . KQ414889.1 266589 267387 + 602 M 156 468 G 0 3 M 91 273 G 0 3 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266590 267387 602 + . gene_id 6 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266590 267387 . + . KQ414889.1 exonerate:protein2genome:local exon 266590 267387 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266590 267387 602 + . alignment_id 6 ; Query gi|805766364|ref|XP_012135240.1| ; Align 266590 3 468 ; Align 267061 159 273 ; Align 267337 250 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 596 Query range: 2 -> 267 Target range: 259724 -> 260525 3 : SerSerAspLysLeuIleThrAsnThrArgTyrLeuGlnAspTyrGluTyrSerIleG : 22 !!!!:! ! ..!:!!.!!..!.!.|||!!!!:! !... !! !!!:||||||:!!| ThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerLeuG 259725 : ACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCC : 259782 23 : lnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProArgAlaSerThrAlaSe : 41 ||!!!|||||||||||||||||||||||||||!.!||||||! !:!!|||:!!.!!!! lnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerThrTh 259783 : AATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCACGAC : 259839 42 : rIleAlaGluLysIleLeuAlaIleValLeuAsnValAlaCysHisValLeuIleIle : 60 !! ! !|||||||||:!!:!!:!!:!!|||! ! !! !|||:!! ! !|||:!: rArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIleLeu 259840 : CAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATACTG : 259896 61 : PheThrPheValProCysLeuLeuPheIleLeuPheGluGluAlaSerPheGlnThrA : 80 !!|||.!.:!!||||||:!!||| !!!:|||.!!|||:!!! !|||!!. ! ! !! ValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrMetL 259897 : GTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGA : 259956 81 : rgIleLysAlaIleGlyProMetSerHisTrpIleMetGlyGluLeuAsnTyrCysPh : 99 :!! |||!.!:!!||||||:!:!!!||||||.!!:!:||| :!!|||||| ysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrThrTh 259957 : AAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACACAAC : 260013 100 : eLeuThrMetArgGlyGlnAspIleLeuHisCysIleGluHisIleGlySerAspTrp : 118 ||| !:!!||||||::!||||||||| !|||:!:||||||:!:! !!:!|||||| rLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAspTrp 260014 : GTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGATTGG : 260070 119 : GlnThrValLysArgAlaSerAspArgGluValMetLeuLysAsnValLysPheGlyA : 138 ::!! !:!!! !|||! !!.!|||!:!.!.|||||||||!:! !!!.!|||||||||| ArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheGlyA 260071 : AGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCGGCA : 260130 139 : rgLeuIleAlaCysLeuAlaAlaValGlyMetAsnValGlyValPheSerTyr<->Il : 156 ||! !:!!|||..!! !..!|||!.! !:!!.!.! !||||||.!.!!!!:! :! rgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCysLe 260131 : GATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTT : 260187 157 : eValIleGlyPheArgLysIleValPheHisValGlyAsnGluSerPheLeuMetTyr : 175 :|||! ! !!!.!!!! ! |||.!.!!.||||||||||||!!! :!!:!::!! uValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleValHis 260188 : GGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCAT : 260244 176 : ArgLeuProCysProValTyrThrLysLeuLeuAsnValLysLeuSerProAlaAsnG : 195 ! !||||||||| !!||||||! !:!!|||:!!||||||!!. !|||||| !|||| LeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetAsnG 260245 : CTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGAACG : 260304 196 : luIleValPheAlaLeuGlnValLeuSerGlyPheIleValAsnSerValThrValGl : 214 ||||||||.!!!.!:!!||| !!:!!||||||||||||||||||||| !|||||||| luIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrValGl 260305 : AGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGG : 260361 215 : yAlaCysGlyLeuAlaAlaIleLeuAlaMetHisAlaCysGlyGlnLeuAsnValMet : 233 | !! !.!!|||||||||:!!|||.!! ||||||||||||||||||||||||:!: yIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeu 260362 : AATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTC : 260418 234 : MetSerArgMetAspGluLeuValGlyAlaGlyValGluGluGlnArgValValLys< : 253 |||..! !!!!: |||!!!|||! !! !..! !.!...!:!!!:! !!.! MetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaProP 260419 : ATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTCCTT : 260478 254 : ->LysLysLeuAlaAspIleValGluHisHisLeuArgThrLeuSer : 267 |||:!!:!!!.!! |||||||||||||||||||||.!!|||!!! heLysGluIleGlyValIleValGluHisHisLeuArgAlaLeuThr 260479 : TCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTCACG : 260525 vulgar: gi|805766364|ref|XP_012135240.1| 2 267 . KQ414889.1 259724 260525 + 596 M 153 459 G 0 3 M 97 291 G 0 3 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259725 260525 596 + . gene_id 7 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259725 260525 . + . KQ414889.1 exonerate:protein2genome:local exon 259725 260525 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259725 260525 596 + . alignment_id 7 ; Query gi|805766364|ref|XP_012135240.1| ; Align 259725 3 459 ; Align 260187 156 291 ; Align 260481 253 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 551 Query range: 17 -> 266 Target range: 262846 -> 263599 18 : GluTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProArgA : 37 !!:||||||:!:|||:!!|||||||||.!.|||||||||||||||!.!||||||! !: AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 38 : laSerThrAlaSerIleAlaGluLysIleLeuAlaIleValLeuAsnValAlaCysHi : 56 !!:!!:!! !|||! ! !|||::!|||:!! !.!!:!!|||! !|||!.!|||:! erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 57 : sValLeuIleIlePheThrPheValProCysLeuLeuPheIleLeuPheGluGluAla : 75 ! !||||||:!!! !||| !!:!!|||! !:!!||| !|||:!!.!.|||! ! ! rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 76 : SerPheGlnThrArgIleLysAlaIleGlyProMetSerHisTrpIleMetGlyGluL : 95 !:!|||!!.! !!:!:!::!!!.!:!!||||||:!:.!!!!.|||.!!:!:||| !: AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 96 : euAsnTyrCysPheLeuThrMetArgGlyGlnAspIleLeuHisCysIleGluHisIl : 114 !!|||||| !!::||| !:!:!.!.!!:!!||||||! ! !|||:!::!!|||:! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 115 : eGlySerAspTrpGlnThrValLysArgAlaSerAspArgGluValMetLeuLysAsn : 133 : !..!|||||| ! !|||! ||| !..!|||!:!...:!!|||||||||||| lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 134 : ValLysPheGlyArgLeuIleAlaCysLeuAlaAlaValGlyMetAsnValGlyValP : 153 !.!|||!:!||||||! !:!:|||..!! !..!|||:!! !|||.!...!.!!:!!. AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 154 : he<->SerTyrIleValIleGlyPheArgLysIleValPheHisValGlyAsnGluSe : 171 !. !.!! !:!!|||! !!.!|||! !! ! |||.!!.!.! !|||||||||!! etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 172 : rPheLeuMetTyrArgLeuProCysProValTyrThrLysLeuLeuAsnValLysLeu : 190 ! :!!:!: !! !||||||||||||||||||! !:!!:!!:!! ||| ! ! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 191 : SerProAlaAsnGluIleValPheAlaLeuGlnValLeuSerGlyPheIleValAsnS : 210 !:!|||.!!||||||||| !!.!!||| !||| !!||||||||||||||||||!.!: AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 211 : erValThrValGlyAlaCysGlyLeuAlaAlaIleLeuAlaMetHisAlaCysGlyGl : 229 !!..!||||||||||||! !|||:!!.!!|||:!:!!!||| |||||||||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 230 : nLeuAsnValMetMetSerArgMetAspGluLeuValGlyAlaGlyValGluGluGln : 248 ||||||||||:!!|||||| !!!!: |||!!!|||..! !..! !!!:|||.!. nLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsn 263484 : GTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAAT : 263540 249 : Arg<->ValValLysLysLysLeuAlaAspIleValGluHisHisLeuArgThrLeu : 266 !:! :!! ! ! :!!:!!!.!! |||||||||||||||||||||..!||| LysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeu 263541 : AAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTG : 263599 vulgar: gi|805766364|ref|XP_012135240.1| 17 266 . KQ414889.1 262846 263599 + 551 M 136 408 G 0 3 M 96 288 G 0 3 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 263599 551 + . gene_id 8 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262847 263599 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263599 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262847 263599 551 + . alignment_id 8 ; Query gi|805766364|ref|XP_012135240.1| ; Align 262847 18 408 ; Align 263258 154 288 ; Align 263549 250 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 550 Query range: 17 -> 266 Target range: 274380 -> 275133 18 : GluTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProArgA : 37 !!:||||||:!:|||||||||||||||||||||||||||||||||!.!|||||| !| AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuA 274381 : GACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAG : 274438 38 : laSerThrAlaSerIleAlaGluLysIleLeuAlaIleValLeuAsnValAlaCysHi : 56 ||||| !!.!!!!!! ! !|||::!||||||:!! !:::||| |||:! laSerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTy 274439 : CCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctA : 274495 57 : sValLeuIleIlePheThrPheValProCysLeuLeuPheIleLeuPheGluGluAla : 75 ! !!!!|||:!!! !||| !!:!!||| !!:!!!!! !|||:!!.!.! !!!:! ! rCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGlu 274496 : CTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAA : 274552 76 : SerPheGlnThrArgIleLysAlaIleGlyProMetSerHisTrpIleMetGlyGluL : 95 |||.!!!!. !!:!:!:||| !:!!||||||:!:.!!||||||.!!!!:|||! !: SerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyI 274553 : AGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAA : 274612 96 : euAsnTyrCysPheLeuThrMetArgGlyGlnAspIleLeuHisCysIleGluHisIl : 114 !!|||||| ! ||| !:!:|||.!!:!!!!:|||! ! !|||:!:||||||!! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 274613 : TTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACAT : 274669 115 : eGlySerAspTrpGlnThrValLysArgAlaSerAspArgGluValMetLeuLysAsn : 133 : !!!!||||||::!! !|||! ||| !!..!|||!:!:!!||||||||||||||| tGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsn 274670 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAAC : 274726 134 : ValLysPheGlyArgLeuIleAlaCysLeuAlaAlaValGlyMetAsnValGlyValP : 153 !.!|||.!!||||||! !:!!||| !!!!..!|||!.! !|||.!. !||||||. AlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 274727 : GCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTC : 274786 154 : heSerTyrIleValIle<->GlyPheArgLysIleValPheHisValGlyAsnGluSe : 171 !!!!!||| !|||||| !.!|||! !! ! ..! !!!!.||||||||||||!! euCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluTh 274787 : TCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGAC : 274843 172 : rPheLeuMetTyrArgLeuProCysProValTyrThrLysLeuLeuAsnValLysLeu : 190 ! !:!!:!!! !||||||||| !!.!|||! !|||:!!:!! ||| ! ! rArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThr 274844 : CAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACG : 274900 191 : SerProAlaAsnGluIleValPheAlaLeuGlnValLeuSerGlyPheIleValAsnS : 210 ||||||.!!||||||||||||.!!|||! !||| !!:!!||||||||||||||||||| SerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnS 274901 : AGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATT : 274960 211 : erValThrValGlyAlaCysGlyLeuAlaAlaIleLeuAlaMetHisAlaCysGlyGl : 229 || !.!!|||||||||! !.!!|||||||||:!:!!!||| ||||||! !||||| erSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGl 274961 : CGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCA : 275017 230 : nLeuAsnValMetMetSerArgMetAspGluLeuValGlyAlaGlyValGluGluGln : 248 ||||!:!|||:!!|||! ! !!!!: !|||!!!|||..! !..! !!!::::... nLeuSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsn 275018 : GTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaat : 275074 249 : Arg<->ValValLysLysLysLeuAlaAspIleValGluHisHisLeuArgThrLeu : 266 ::: ||| ...:!!:!!!.!! :!!||||||||||||||||||..!||| LysAsnValTyrPheSerGluIleGlyValValValGluHisHisLeuArgValLeu 275075 : aaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTC : 275133 vulgar: gi|805766364|ref|XP_012135240.1| 17 266 . KQ414889.1 274380 275133 + 550 M 141 423 G 0 3 M 91 273 G 0 3 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274381 275133 550 + . gene_id 9 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274381 275133 . + . KQ414889.1 exonerate:protein2genome:local exon 274381 275133 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274381 275133 550 + . alignment_id 9 ; Query gi|805766364|ref|XP_012135240.1| ; Align 274381 18 423 ; Align 274807 159 273 ; Align 275083 250 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 469 Query range: 12 -> 269 Target range: 221360 -> 222134 13 : TyrLeuGlnAspTyrGluTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleG : 32 ||| ! !:!! :!!! |||:!:||||||!:!||||||.!!||||||||||||| TyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleG 221361 : TACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCG : 221418 33 : lyValTrpProArgAlaSerThrAlaSerIleAlaGluLysIleLeuAlaIleValLe : 51 |||||||||||!.!:!!:!!!.! !|||! !.!|||!:! !||| ! :!!:! lyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLeuIl 221419 : GTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCTGAT : 221475 52 : uAsnValAlaCysHisValLeuIleIlePheThrPheValProCysLeuLeuPheIle : 70 !||||||!.!|||:!! !||||||! ||| !!!.||||||||| !|||!:!:!: eAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyrVal 221476 : AAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTG : 221532 71 : LeuPheGluGluAlaSerPheGlnThrArgIleLysAlaIleGlyProMetSerHisT : 90 :!!.!!|||! !! !..! !! ! !.!||||||||| !:!:||||||:!!||| !! IleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheC 221533 : ATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCT : 221592 91 : rpIleMetGlyGluLeuAsnTyrCysPheLeuThrMetArgGlyGlnAspIleLeuHi : 109 ! :!:|||!.! |||!!.||| !.!.|||! !:!: !! !.!.||||||! !.! ysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGl 221593 : GCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGA : 221649 110 : sCysIleGluHisIleGlySerAspTrpGlnThrValLysArgAlaSerAspArgGlu : 128 .|||||||||!.!|||! !!!!||||||:!!!.!:!!! !:!!!.!|||!:!!!: uCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLysAsp 221650 : GTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAGGAT : 221706 129 : ValMetLeuLysAsnValLysPheGlyArgLeuIleAlaCysLeuAlaAlaValGlyM : 148 :!!|||:!!:!!|||!.!! |||||||||! !:!: ! :!!..!.!! !! !| IleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheM 221707 : ATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCA : 221766 149 : etAsnValGly<->ValPheSerTyrIleValIleGlyPheArgLysIleValPheHi : 166 || !! !||| |||||| ||||||!.!||| !|||!!! ! ! !.!!! etTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIlePr 221767 : TGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCC : 221823 167 : sValGlyAsnGluSerPheLeuMetTyrArgLeuProCysProValTyrThrLysLeu : 185 !!.! !:!! ::: ... ! !:!! !! !||| !!! ! ! :!! oAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPheIle 221824 : TGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATC : 221880 186 : LeuAsnValLysLeuSerProAlaAsnGluIleValPheAlaLeuGlnValLeuSerG : 205 :!!:!!..!::!! !||||||!.!|||||||||:!!|||:!!||||||:!!:!!:!!| ValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaG 221881 : GTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGG : 221940 206 : lyPheIleValAsnSerValThrValGlyAlaCysGlyLeuAlaAlaIleLeuAlaMe : 224 || !:!::!!:!!|||:!!||| !!.!||||||.!!|||!.!|||!!:!!!|||:! lyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaVa 221941 : GTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGT : 221997 225 : tHisAlaCysGlyGlnLeuAsnValMetMetSerArgMetAspGluLeuValGlyAla : 243 !|||||||||||||||:!!.!.|||:!!|||||| !!:!! ! .!.|||:!!..!!.! lHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsnGly 221998 : GCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGC : 222054 244 : GlyValGluGluGlnArgValValLysLysLysLeuAlaAspIleValGluHisHisL : 263 !!!.!!!: ! !.! !||| ! !:!!:!:!!||| ! ||||||.!.!!.|||: ArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnHisV 222055 : CGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAACACG : 222114 264 : euArgThrLeuSerPheVal : 269 !!|||! !|||..!!:!||| alArgIleLeuGlnTyrVal 222115 : TTCGAATATTGCAGTATGTA : 222134 vulgar: gi|805766364|ref|XP_012135240.1| 12 269 . KQ414889.1 221360 222134 + 469 M 139 417 G 0 3 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221361 222134 469 + . gene_id 10 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221361 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221361 222134 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221361 222134 469 + . alignment_id 10 ; Query gi|805766364|ref|XP_012135240.1| ; Align 221361 13 417 ; Align 221781 152 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 462 Query range: 113 -> 388 Target range: 304413 -> 305786 114 : IleGlySerAspTrpGlnThrValLysArgAlaSerAspArgGluValMetLeuLysA : 133 :!!..!!!!! !:::!! !|||:!! ! !!!!|||||||||:!!||||||||| LeuSerThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysT 304414 : CTCTCTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAAT : 304471 134 : snValLysPheGlyArgLeuIleAlaCysLeuAlaAlaValGlyMetAsnValGlyVa : 152 !!! !:!!.!.|||||| !:!:.!! :!!..!|||:!! !||| !!..!|||! yrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGl 304472 : ACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGG : 304528 153 : lPheSerTyrIleValIleGlyPheArgLysIleValPheHisValGlyAsnGluSer : 171 ! !! !||| !..!:!! ! ! !! !! ! :!!|||! !.!. ! !:! yThrIleTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsn 304529 : CACCATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAAT : 304585 172 : PheLeuMetTyrArgLeuProCysProValTyrThrLysLeuLeuAsnValLysLeuS : 191 ! !!!: ! ! !||| !! !|||..!|||!:! |||!!!:!!|||:!! !| ArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrS 304586 : CGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAA : 304645 192 : erProAlaAsnGluIleValPheAlaLeuGlnValLeuSerGlyPheIleValAsnSe : 210 ||||| ! !!|||:!:|||!:! !:!!!!. !:!!!!!|||!:!:!!:!! !!|| erProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSe 304646 : GCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTC : 304702 211 : rValThrValGlyAlaCysGlyLeuAlaAlaIleLeuAlaMetHisAlaCysGlyGln : 229 |:!!|||!.!|||||||||||||||||||||:!!!!!|||! ||||||||||||||| rIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGln 304703 : TATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAA : 304759 230 : LeuAsnValMetMetSerArgMetAspGluLeuValGlyAlaGlyValGluGluGlnA : 249 :!!:!!:!!:!:|||||||||:!!! !!!:||||||..!::! :!!|||..! IleAspIleValMetSerArgLeuGlyAspLeuValAsnSer------LysGluSerS 304760 : ATTGATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGC------AAAGAATCAT : 304813 250 : rgValValLysLysLysLeuAlaAspIleValGluHisHisLeuArgThrLeu{Se} : 267 !! !:!! ! |||::!||| !!!:|||||||||||||||||||||! !|||{!!} erAspLeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIleLeu{Ar}+ 304814 : CTGATTTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTA{AG}g : 304869 268 : >>>> Target Intron 1 >>>> {r}PheValTrpTyrIleGluLysIleMet : 276 70 bp {!}||| ! :!::!!! !:!::!! + ++{g}PheSerAlaIleValGlnThrValLeu 304870 : t.........................ag{A}TTCTCGGCAATAGTGCAAACAGTGTTG : 304964 277 : AsnLeuIleCysLeuValGluLeuValGlyCysThrValAsnIleCysValLeuGluT : 296 .!. !:!!|||!!!:!!|||!!!:!!|||! !|||:!! ||||||:!!||||||| GlnGluValCysPheLeuGluPheIleGlySerThrLeuLeuIleCysLeuLeuGluT 304965 : CAAGAAGTATGCTTCTTGGAATTCATTGGTTCTACCTTACTGATATGTCTACTTGAAT : 305024 297 : yrTyrIleIleThr >>>> Target Intron 2 >>>> GluLysSerLysAsp : 305 ||||| !|||||| 71 bp ...!..!:!! ! ! yrTyrCysIleThr++ ++SerSerAsnThrVal 305025 : ACTACTGTATAACGgt.........................agAGCAGTAATACCGTT : 305122 306 : ThrLeuAlaSerTyrAlaIleIleTyrAlaSerMetSerPheAsnIlePheIlePheC : 325 !:!|||.!!!!!|||.!!:!::!! !|||:!:!!!|||||||||||||||!!.| SerLeuThrThrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuC 305123 : AGTCTTACAACATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTAT : 305182 326 : ysTyrIleGlyGluArgLeuThrGluGln >>>> Target Intron 3 >>>> : 335 ||||||||||||||! !|||! !|||:!! 413 bp ysTyrIleGlyGluIleLeuMetGluLys++ ++ 305183 : GCTACATTGGTGAGATTCTTATGGAAAAGgt.........................ag : 305623 336 : CysLysLysValGlyGluLysAlaTyrSerValGluTrpTyrArgLeuSerHisArgT : 354 !!!..!..|||||| !.....!!:!! !:!!...||||||!.!||| !! !!:!| SerSerSerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysT 305624 : AGCAGTAGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGA : 305682 355 : hrAlaLeuSerLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAl : 373 || !! !.!!|||:!!:!:||||||:!!! !||||||! ! !||||||!:!|| hrIleHisGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAl 305683 : CGATACATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGC : 305739 374 : aGlyLysIleIleArgIleSerLeuAlaThrPheGlyAspValSer : 388 |||||||:!!:!! !:!!||||||:!!|||||||||:!!|||||| aGlyLysValValAspLeuSerLeuSerThrPheGlyAsnValSer 305740 : TGGTAAAGTAGTTGATTTATCTTTATCCACATTTGGAAACGTGAGT : 305786 vulgar: gi|805766364|ref|XP_012135240.1| 113 388 . KQ414889.1 304413 305786 + 462 M 130 390 G 2 0 M 21 63 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 33 99 5 0 2 I 0 67 3 0 2 M 34 102 5 0 2 I 0 409 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304414 305786 462 + . gene_id 11 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 304414 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304414 304868 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305109 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 305108 305109 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305110 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305110 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305786 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305786 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304414 305786 462 + . alignment_id 11 ; Query gi|805766364|ref|XP_012135240.1| ; Align 304414 114 390 ; Align 304804 246 63 ; Align 304940 268 99 ; Align 305110 301 102 ; Align 305625 335 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 437 Query range: 1 -> 269 Target range: 217123 -> 217930 2 : AsnSerSerAspLysLeuIleThrAsnThrArgTyrLeuGlnAspTyrGluTyrSerI : 21 |||!.!..!.!....! !! !|||:!! !...||| :::::: ... |||| AsnLysGluGlnSerProArgThrAspTyrGluTyrGluLysAsnIleAsnLeuSerI 217124 : AACAAGGAACAATCCCCCAGAACCGACTACGAgtacgagaaaaatataaatctcaGTA : 217181 22 : leGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProArgAlaSerThrAl : 40 |||||! !|||||||||!!.|||||||||!!:|||:!!||||||!.!:!! !!|||.! leGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnSerArgThrTh 217182 : TCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACTCACGTACCAC : 217238 41 : aSerIleAlaGluLysIleLeuAlaIleValLeuAsnValAlaCysHisValLeuIle : 59 !!!!! !:!!..!||||||||| !! !:!!:!!|||!.! !|||:!!! !|||||| rThrArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIle 217239 : CACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTACGGTTTGATA : 217295 60 : IlePheThrPheValProCysLeuLeuPheIleLeuPheGluGluAlaSerPheGlnT : 79 ! !||| !||||||||||||! !:!!!:!:!:!!!.!!|||! ! !..!.!! ! SerPheLeuPheValProCysSerMetTyrValPheLeuGluValGluAspLeuTyrA 217296 : AGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAGATCTCTACG : 217355 80 : hrArgIleLysAlaIleGlyProMetSerHisTrpIleMetGlyGluLeuAsnTyrCy : 98 !!:!:!:||| !.!!||||||:!!! ! !!! :!:|||!.! :!!!!.|||! spLysLeuLysLeuPheGlyProLeuIlePheCysValMetAlaPheValLysTyrTy 217356 : ACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTA : 217412 99 : sPheLeuThrMetArgGlyGlnAspIleLeuHisCysIleGluHisIleGlySerAsp : 117 !! !|||! !:!:!.! ! !||||||! !.!.|||:!:..!...|||! ! !!||| rSerLeuIleValHisLysAlaAspIleArgGluCysValArgArgIleGluArgAsp 217413 : CTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGAC : 217469 118 : TrpGlnThrValLysArgAlaSerAspArgGluValMetLeuLysAsnValLysPheG : 137 |||::!!.!|||!:! !!! !!.!|||||||||!.!|||:!! !|||!.!!!.|||| TrpArgAsnValArgCysGluLysAspArgGluAlaMetIleValAsnAlaAsnPheG 217470 : TGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTG : 217529 138 : lyArgLeuIleAlaCysLeuAlaAlaValGlyMetAsnValGly<->ValPheSerTy : 155 ||||| !:!:!.! |||..!.!! !! !||| !! !||| |||||| || lyArgLysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheValPheTyrTy 217530 : GCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcgttttttatta : 217586 156 : rIleValIleGlyPheArgLysIleValPheHisValGlyAsnGluSerPheLeuMet : 174 ||||!.!||| !.!!!!! ! !.!!! !! !|||! !!:!.!! !.!. rIleAlaIleProIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuThrPhe 217587 : catCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTT : 217643 175 : TyrArgLeuProCysProValTyrThrLysLeuLeuAsnValLysLeuSerProAlaA : 194 !! !||| !! !||| !! ! ! ! :!!:!!:!!..!:::! !!!!|||.!!| IleProLeuValPheProPheThrLysTyrIleIleAspThrArgTyrThrProThrA 217644 : ATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCTACGA : 217703 195 : snGluIleValPheAlaLeuGlnValLeuSerGlyPheIleValAsnSerValThrVa : 213 |||||||||||||| !||||||:!!:!!:!!||| !:!::!!:!!.!!:!!||| snGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSe 217704 : ACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCACGTC : 217760 214 : lGlyAlaCysGlyLeuAlaAlaIleLeuAlaMetHisAlaCysGlyGlnLeuAsnVal : 232 !!.!||||||.!!||||||||| !!!!|||:!:|||||||||||||||:!!.!.||| rAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGluVal 217761 : GGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTG : 217817 233 : MetMetSerArgMetAspGluLeuValGlyAlaGlyValGluGluGlnArgValValL : 252 :!!|||!:! !!:!!.!..!.|||:!!! !!.! !!!.!!!: !... !..!||| LeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgAlaAspMetSerAspThrValA 217818 : TTGATGAACTGGCTGCAACATTTAATCGACGGTAGAGCGGATATGAGCGATACTGTGG : 217877 253 : ysLysLysLeuAlaAspIleValGluHisHisLeuArgThrLeuSerPheVal : 269 ! !:!:!!|||..!||||||...!!.|||:!!|||! !|||!.!! !||| spGlyArgIleAlaSerIleValSerGlnHisValArgIleLeuLysCysVal 217878 : ATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTAAAGTGTGTA : 217930 vulgar: gi|805766364|ref|XP_012135240.1| 1 269 . KQ414889.1 217123 217930 + 437 M 150 450 G 0 3 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217124 217930 437 + . gene_id 12 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217124 217930 . + . KQ414889.1 exonerate:protein2genome:local exon 217124 217930 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217124 217930 437 + . alignment_id 12 ; Query gi|805766364|ref|XP_012135240.1| ; Align 217124 2 450 ; Align 217577 152 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 432 Query range: 7 -> 300 Target range: 212839 -> 214561 8 : IleThrAsnThrArgTyrLeuGlnAspTyrGluTyrSerIleGlnLeuAsnArgTrpP : 27 :!! !:!! !! !||| !:!! ... |||||| !! !|||||||||. ValGluAspCysThrTyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpL 212840 : GTCGAAGACTGTACCTACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGC : 212897 28 : heLeuLysProIleGlyValTrpProArgAlaSerThrAlaSerIleAlaGluLysIl : 46 !!|||||||||! |||:!!|||||| ! !||| !!.!||| !||||||! euLeuLysProThrGlyLeuTrpProAspLysSerTyrValSerProIleGluLysAs 212898 : TTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAA : 212954 47 : eLeuAlaIleValLeuAsnValAlaCysHisValLeuIleIlePheThrPheValPro : 65 !:!!||| !:!!:!!|||..!!.!|||:!!! !|||||| !!:! ! ! :!!||| nIleAlaArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIlePro 212955 : CATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCG : 213011 66 : CysLeuLeuPheIleLeuPheGluGluAlaSerPheGlnThrArgIleLysAlaIleG : 85 ||| !|||!:!:!:!!!.!!!!:! ! :::... ...|||:!! !.!!| CysSerLeuTyrValPheLeuAspValGluAsnIlePheLysGluIleGluLeuPheG 213012 : TGCAGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCG : 213071 86 : lyProMetSerHisTrpIleMetGlyGluLeuAsnTyrCysPheLeuThrMetArgGl : 104 || !.!.:!! !!! :!: !.! !! !!!.||| !! |||! !:!:!.!|| lyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGl 213072 : GCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGG : 213128 105 : yGlnAspIleLeuHisCysIleGluHisIleGlySerAspTrpGlnThrValLysArg : 123 |.!.||||||! ! |||:!!||||||!!: !! !||||||:!!!.!:!!! !!.! yAspAspIleArgThrCysValGluHisMetLysTyrAspTrpLysAsnIleThrHis 213129 : TGACGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCAC : 213185 124 : AlaSerAspArgGluValMetLeuLysAsnValLysPheGlyArgLeuIleAlaCysL : 143 ! !..!|||!:!|||:!!||| ! !|||!.!!..||||||!:! !|||!.! : GluGluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrI 213186 : GAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAA : 213245 144 : euAlaAlaValGlyMetAsnValGly<->ValPheSerTyrIleValIleGlyPheAr : 161 !!..!||| !! !||| !!..!||| ..!|||! !!:!:!!|||:!! !.!!!! leCysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuValValProIleSe 213246 : TTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAG : 213302 162 : gLysIleValPheHisValGlyAsnGluSerPheLeuMetTyrArgLeuProCysPro : 180 ! ! ! !.!. !.!! !:!! !:! ! !.!. !:!:!! ! !||| rAlaAspLysMetValAlaGluAspLeuAsnValThrPheArgGlnMetValValPro 213303 : CGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCT : 213359 181 : ValTyrThrLysLeuLeuAsnValLysLeuSerProAlaAsnGluIleValPheAlaL : 200 |||! ! ! :!!:!!:!!|||::!! !||||||!.!||||||||| !!||| !: ValSerArgPheIleValAspValArgTyrSerProValAsnGluIlePhePheLeuI 213360 : GTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGA : 213419 201 : euGlnValLeuSerGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuAl : 219 !!|||:!!:!!:!!||| ! :!::!!:!!:!!:!!.!!|||! !||||||.!!||||| leGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAl 213420 : TTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGC : 213476 220 : aAlaIleLeuAlaMetHisAlaCysGlyGlnLeuAsnValMetMetSerArgMetAsp : 238 ||||:!:!!!|||:!:|||||||||||||||:!!..!:!!:!!|||||| !!:!!!!: aAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGlu 213477 : AGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAA : 213533 239 : GluLeuValGlyAlaGlyValGluGluGlnArgValValLysLysLysLeuAlaAspI : 258 .!.|||:!!! !!.! !!! !!!: !...!:! !||| ! ! !:!:!!|||! !| HisLeuIleAspGlyArgGluAspMetSerLysAsnValAspAspArgIleAlaValI 213534 : CATTTGATAGACGGTAGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCA : 213593 259 : leValGluHisHisLeuArgThrLeuSerPheValTrpTyrIleGlu >>>> Targ : 274 |||||.!.!!.|||:!!|||! !|||!.!!::||| ! :!: ! leValAsnGlnHisValArgIleLeuLysTrpVal---GluLeuTrp++ 213594 : TCGTGAACCAGCATGTGCGGATACTGAAGTGGGTG---GAATTGTGGgt......... : 213640 275 : et Intron 1 >>>> LysIleMetAsnLeuIleCysLeuValGluLeuValGlyC : 287 843 bp ||| !:!:...! !:!!! !!!!!.!||||||:!!! !| ++LysAlaLeuArgGlnValSerPheAlaGluLeuLeuValC 213641 : ................agAAAGCACTTCGGCAAGTATCTTTCGCTGAATTATTAGTAT : 214520 288 : ysThrValAsnIleCysValLeuGluTyrTyrIleIleThr : 300 |||||||||||:!!|||:!!:!!! !||||||||||||||| ysThrValAsnLeuCysLeuValGlyTyrTyrIleIleThr 214521 : GCACGGTGAATCTCTGTCTCGTTGGATATTACATAATAACG : 214561 vulgar: gi|805766364|ref|XP_012135240.1| 7 300 . KQ414889.1 212839 214561 + 432 M 144 432 G 0 3 M 118 354 G 1 0 M 3 9 5 0 2 I 0 839 3 0 2 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212840 214561 432 + . gene_id 13 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212840 213637 . + . KQ414889.1 exonerate:protein2genome:local exon 212840 213637 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 213638 213639 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213638 214480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214479 214480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214481 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214481 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212840 214561 432 + . alignment_id 13 ; Query gi|805766364|ref|XP_012135240.1| ; Align 212840 8 432 ; Align 213275 152 354 ; Align 213629 271 9 ; Align 214481 274 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 424 Query range: 0 -> 276 Target range: 236798 -> 237626 1 : MetAsnSerSerAspLysLeuIleThrAsnThrArgTyrLeuGlnAspTyrGluTyrS : 20 |||!:!!:!..! ! ! :!!:!!|||.!.! !!.! ! ..! !!!:|||| MetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrS 236799 : ATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACA : 236856 21 : erIleGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProArgAlaSerTh : 39 ||:!!|||! !||||||||| :!!||| !||||||..!||||||!:! !||| erLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSer-- 236857 : GTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCG-- : 236913 40 : rAlaSerIleAlaGluLysIleLeuAlaIleValLeuAsnValAlaCysHisValLeu : 58 |||! ! !|||!:!! !:!!:!! !:!!||||||||| !|||:!!..! ! ----SerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAla 236914 : ----TCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCA : 236964 59 : IleIlePheThrPheValProCysLeuLeuPheIleLeuPheGluGluAlaSerPheG : 78 |||:!!|||:!!.!.:!!||||||! !||| !:!!:!!.!.|||:!!!.!!!!||| IleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheT 236965 : ATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCT : 237024 79 : lnThrArgIleLysAlaIleGlyProMetSerHisTrpIleMetGlyGluLeuAsnTy : 97 ! |||!:!:!:||| !:!!||| !!:!!|||||||||:!:.!. !! :!!!:!|| yrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTy 237025 : ACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTA : 237081 98 : rCysPheLeuThrMetArgGlyGlnAspIleLeuHisCysIleGluHisIleGlySer : 116 | !.!.||| !:!!||| !!:!! !|||! !|||! !.!!.!.|||!!:! !!!! rThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThr 237082 : CACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACC : 237138 117 : AspTrpGlnThrValLysArgAlaSerAspArgGluValMetLeuLysAsnValLysP : 136 ||||||::!|||..! ||| ... :::||||||||||||||| !!!.!|||| AspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysP 237139 : GATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAAT : 237198 137 : heGlyArgLeuIleAlaCysLeuAlaAlaValGlyMetAsnValGlyValPheSerTy : 155 ||.!!|||! ! ||| !! !..!.!!:!! !!!::!!! !|||:!!.!!.!!|| heSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTy 237199 : TTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATA : 237255 156 : rIleValIle<->GlyPheArgLysIleValPheHisValGlyAsnGluSerPheLeu : 173 | !|||!!: !.!! !! !! !!!:||| !! |||||||||:!!!!! :!! rCysValMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIle 237256 : TTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATC : 237312 174 : MetTyrArgLeuProCysProValTyrThrLysLeuLeuAsnValLysLeuSerProA : 193 :!! ! !||||||! |||:!!|||! ! !|||||| ||| ! !!:! !! LeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrM 237313 : TTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTA : 237372 194 : laAsnGluIleValPheAlaLeuGlnValLeuSerGlyPheIleValAsnSerValTh : 212 !|||!!:|||||| !! !! !||| !!|||||||||||||||!.!|||!:! !.! etAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAl 237373 : TGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGC : 237429 213 : rValGlyAlaCysGlyLeuAlaAlaIleLeuAlaMetHisAlaCysGlyGlnLeuAsn : 231 !:!!.!!!.! .!!|||.!!::! !|||.!! ||||||! !|||||||||!:! aIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSer 237430 : GATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGC : 237486 232 : ValMetMetSerArgMetAspGluLeuValGlyAlaGlyValGluGluGlnArgValV : 251 |||:!:|||! ! !!!:!!:!!:!!!|||.!!! !!.! !.....! !!:!! !! ValValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspA 237487 : GTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACG : 237546 252 : alLys<->LysLysLeuAlaAspIleValGluHisHisLeuArgThrLeuSerPheVa : 269 ! ! ! :!!:!! !! |||||||||.!.|||||||||..!|||!.!! || spHisPheAspGluIleProThrIleValGluGluHisLeuArgValLeuLys***Va 237547 : ATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAGT : 237603 270 : lTrpTyrIleGluLysIleMet : 276 |!! ! :!:!!: !|||:!! lCysLeuLeuAspLeuIleLeu 237604 : ATGTTTGTTGGATTTGATTTTG : 237626 vulgar: gi|805766364|ref|XP_012135240.1| 0 276 . KQ414889.1 236798 237626 + 424 M 38 114 G 2 0 M 118 354 G 0 3 M 94 282 G 0 3 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236799 237626 424 + . gene_id 14 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236799 237626 . + . KQ414889.1 exonerate:protein2genome:local exon 236799 237626 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236799 237626 424 + . alignment_id 14 ; Query gi|805766364|ref|XP_012135240.1| ; Align 236799 1 114 ; Align 236913 41 354 ; Align 237270 159 282 ; Align 237555 253 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 384 Query range: 8 -> 266 Target range: 278546 -> 279338 9 : ThrAsnThrArgTyrLeuGlnAspTyrGluTyrSerIleGlnLeuAsnArgTrpPheL : 28 |||:!!:!!! !!:: ! !|||!:: !||||||:!!|||:!!||||||||||||| ThrAspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheL 278547 : ACCGATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTC : 278604 29 : euLysProIleGlyValTrpProArgAlaSerThrAlaSerIleAlaGluLysIleLe : 47 |||||||||||||||||||||||! !::! ! !!.!!!!! ! !||||||||| euLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSe 278605 : TCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAG : 278661 48 : uAlaIleValLeuAsnValAlaCysHisValLeuIleIlePheThrPheValProCys : 66 !:!!:!:|||||| :!! ! !! ! !!|||||| !||| !!!.||||||||| rSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCys 278662 : TTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGC : 278718 67 : <->LeuLeuPheIleLeuPheGluGluAlaSerPheGlnThrArgIleLysAlaIleG : 85 |||! ! :!:||| !:!! !.!..!.!!.!.|||!:!|||||| !|||| AlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleG 278719 : GCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCG : 278778 86 : lyProMetSerHisTrpIleMetGlyGluLeuAsnTyrCysPheLeuThrMetArgGl : 104 |||||:!:||| !!! ! |||!.! !:!!!!.|||! !.!!|||! ! !||||| lyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGl 278779 : GTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGG : 278835 105 : yGlnAspIleLeuHisCysIleGluHisIleGlySerAspTrpGln<-><-><->Thr : 120 | ! ||| ! ! |||:!:.!. !!||| !!!!!||||||... :!! yGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSer 278836 : CGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCG : 278892 121 : ValLysArgAlaSerAspArgGluValMetLeuLysAsnValLysPheGlyArgLeuI : 140 !:::::: ...:::||||||:::||| ! ! !:!!.!!:!.!!||||||! !: TyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerL 278893 : TATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTT : 278952 141 : leAlaCysLeuAlaAlaValGlyMetAsnValGlyValPheSerTyrIleValIleGl : 159 !:||| !!!!::!|||! ! !||| !! !|||! ! !!! !|||! !!.!:!: euAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMe 278953 : TGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGAT : 279009 160 : yPheArgLysIleValPheHisValGlyAsnGluSerPheLeuMetTyrArgLeuPro : 178 ! ! !||| ! ! ! !! !!!:!:! !:!! !! ! !! tProLeuPheAlaValArgThrGluIleIleAspAsnGluThrValArgSerGlnAla 279010 : GCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCG : 279066 179 : CysProValTyrThrLysLeuLeuAsnValLysLeuSerProAlaAsnGluIleValP : 198 ! !|||:!!||| ! ||||||:!! !::: !||||||:!! !||||||||| PheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValG 279067 : TTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGC : 279126 199 : heAlaLeuGlnValLeuSerGlyPheIleValAsnSerValThrValGlyAlaCysGl : 217 !:!!||| !|||:!!!.!|||:!!:!! !!|||||||||||||||||||||.! lnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSe 279127 : AATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAG : 279183 218 : yLeuAlaAlaIleLeuAlaMetHisAlaCysGlyGlnLeuAsnValMetMetSerArg : 236 !||| !|||:!:!!!!.!||||||!.!|||||||||!!!!..:!!:!::!!!!!!:! rLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLys 279184 : CTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAG : 279240 237 : MetAspGluLeuValGlyAla<-><->GlyValGluGluGlnArgValValLysLysL : 254 :!!|||:!!|||:!!! !!.! ||| !:!!... !!!!..! !:!!:!!: LeuAspLysLeuIleAspGlyValLysGlyArgLysSerLeuSerThrHisGluGlnA 279241 : CTGGATAAGCTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAAC : 279300 255 : ysLeuAlaAspIleValGluHisHisLeuArgThrLeu : 266 :!|||!.!||||||:!!||||||||||||!:!! !||| rgLeuGlyAspIleIleGluHisHisLeuLysIleLeu 279301 : GACTGGGAGATATCATCGAGCATCATCTGAAGATACTG : 279338 vulgar: gi|805766364|ref|XP_012135240.1| 8 266 . KQ414889.1 278546 279338 + 384 M 58 174 G 0 3 M 53 159 G 0 9 M 124 372 G 0 6 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278547 279338 384 + . gene_id 15 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278547 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278547 279338 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278547 279338 384 + . alignment_id 15 ; Query gi|805766364|ref|XP_012135240.1| ; Align 278547 9 174 ; Align 278724 67 159 ; Align 278892 120 372 ; Align 279270 244 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 343 Query range: 8 -> 266 Target range: 289705 -> 290479 9 : ThrAsnThrArgTyrLeuGlnAspTyrGluTyrSerIleGlnLeuAsnArgTrpPheL : 28 :!!||| !|||||| ! !||| ...|||!!!.!!:!!||| !!.!|||.!!| SerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleL 289706 : TCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCT : 289763 29 : euLysProIleGlyValTrpProArgAla<->SerThrAlaSerIleAlaGluLysIl : 46 ||||||||||||||:!!!::||| !!.! ||| !||||||! ! !|||::!! euLysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgTh 289764 : TGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAAC : 289820 47 : eLeuAlaIleValLeuAsnValAlaCysHisValLeuIleIlePheThrPheValPro : 65 !:!!:!::!!|||! !:!!!.!||| ! !:!!:!! |||! !.!.|||||| rAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValPro 289821 : GGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCG : 289877 66 : CysLeuLeuPheIleLeuPheGluGluAlaSerPheGlnThrArgIleLysAlaIleG : 85 ! ! !! ! !:!!||||||...!!: !..!.!..!.||| !:!!||| !:!!| PheSerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuG 289878 : TTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCG : 289937 86 : lyProMetSerHisTrpIleMetGlyGluLeuAsnTyrCysPheLeuThrMetArgGl : 104 |||||:!!!!! !!! :!:! ! !!!!!.||||||!:!!!!!:!|||!:!|| lyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGl 289938 : GACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGG : 289994 105 : yGlnAspIleLeuHisCysIleGluHisIleGlySerAspTrpGlnThrValLysArg : 123 |..!! ||| !!.!|||:!::!!||||||! !!!!||||||:!!! !:!!::: ! ySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAsp 289995 : TTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGAC : 290051 124 : AlaSerAspArgGluValMetLeuLysAsnValLysPheGlyArgLeuIleAlaCysL : 143 ! !..! !!|||! :!!||||||!:! !!|||! !.!..!!||| !:!! ! | GluAspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysL 290052 : GAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAAC : 290111 144 : euAlaAlaValGlyMetAsnValGlyValPheSerTyrIleValIleGlyPheArgLy : 162 ||..!|||:!! !:!! !!:!!|||! !.!.||||||! !..!:!! .!.! ! euCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrVal---IleProLe 290112 : TGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTC---ATACCGTT : 290165 163 : sIleValPheHisValGlyAsnGluSerPheLeuMetTyrArgLeuProCysProVal : 181 !.!! ! ! !! !|||! !:! ! !!!: ! !||| !!! !|||! ! uPheSerLysLysSerValAsnGlyAsnValThrIleArgProLeuThrTyrProGly 290166 : GTTCTCGAAGAAGAGCGTGAACGGTAACGTGACTATCAGACCTCTAACTTATCCCGGT : 290222 182 : TyrThrLysLeuLeuAsnValLysLeuSerProAlaAsnGluIleValPheAlaLeuG : 201 ||| !:!!!!!!!!:!!|||:!! !||||||||| !!||||||||||||..!:!!! TyrGluGluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetH 290223 : TACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGC : 290282 202 : lnValLeuSerGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuAlaAl : 220 !. !:!!! !! !.!.|||..! !:!:!!|||:!!!.!|||! !.!!|||.!!.! isCysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrTh 290283 : ACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGAC : 290339 221 : aIleLeuAlaMetHisAlaCysGlyGlnLeuAsnValMetMetSerArgMetAspGlu : 239 !|||!!!|||! |||.!!|||||||||:!!!!.:!!...! !!!!|||:!!!!:!!: rIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAsp 290340 : GATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGAT : 290396 240 : LeuValGlyAlaGlyValGluGluGlnArgValValLysLysLysLeuAlaAspIleV : 259 |||..! ! !|||:!! ! !:!!!:!! !|||!.. ! :::||||||! !:!!| LeuThrLysArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValValV 290397 : CTGACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTG : 290456 260 : alGluHisHisLeuArgThrLeu : 266 ||... !|||:!!..!! !||| alSerGlyHisValGluIleLeu 290457 : TGAGCGGTCACGTGGAGATCTTG : 290479 vulgar: gi|805766364|ref|XP_012135240.1| 8 266 . KQ414889.1 289705 290479 + 343 M 29 87 G 0 3 M 121 363 G 1 0 M 107 321 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289706 290479 343 + . gene_id 16 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289706 290479 . + . KQ414889.1 exonerate:protein2genome:local exon 289706 290479 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 289706 290479 343 + . alignment_id 16 ; Query gi|805766364|ref|XP_012135240.1| ; Align 289706 9 87 ; Align 289796 38 363 ; Align 290159 160 321 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 293 Query range: 5 -> 264 Target range: 204197 -> 204971 6 : LysLeuIleThrAsnThrArgTyrLeuGlnAspTyrGluTyrSerIleGlnLeuAsnA : 25 |||:!! ! !! !.!!||| !:!!||| ..!|||:!!! !!::!!! ! LysMetSerGlyIleAlaArgAlaGluGluAspLeuArgTyrAlaThrArgPheValL 204198 : AAAATGTCTGGAATCGCGAGGGCAGAAGAGGACCTGAGATACGCGACACGTTTCGTGA : 204255 26 : rgTrpPheLeuLysProIleGlyValTrpProArgAlaSerThrAlaSerIleAlaGl : 44 :! !.!!||| ! !:!!|||!.!||||||! ! !! !!.!:!!||| ! ysProIleLeuGlyIleValGlyAlaTrpProIleProValAsnSerSerProPheTh 204256 : AGCCGATTTTAGGGATAGTCGGTGCGTGGCCGATTCCAGTGAACTCCTCTCCGTTCAC : 204312 45 : uLysIleLeuAlaIleValLeuAsnValAlaCysHisValLeuIleIlePheThrPhe : 63 !!:!:!!:!! ! !:!! !:!!|||!.! !::: |||......... !.!! rArgLeuValArgArgIleGluHisValValThrTyrPheLeuPhePheLeuMetIle 204313 : GAGGCTAGTACGGCGAATAGAACACGTAGTCACCtatttcctcttctttctgaTGATC : 204369 64 : ValProCysLeuLeuPheIleLeuPheGluGluAlaSerPheGlnThrArgIleLysA : 83 |||||| !!||||||!:!:!:!!!.!.:!!||| !!:! !:!!! !|||:!:||| ValProGlyLeuLeuTyrValPheLeuLysGluLysAsnGlyLysIleArgLeuLysI 204370 : GTACCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGA : 204429 84 : laIleGlyProMetSerHisTrpIleMetGlyGluLeuAsnTyrCysPheLeuThrMe : 102 !:!!||||||!!: !:!!!! ! !!!: ! !!!!!.|||! ! !!:!! ! leLeuGlyProIleValAsnCysSerIleGlnPhePheLysTyrSerValIleLeuTy 204430 : TTCTCGGGCCGATCGTGAACTGCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTA : 204486 103 : tArgGlyGlnAspIleLeuHisCysIleGluHisIleGlySerAspTrpGlnThrVal : 121 ||| !.!. ! |||! ! ! !!:!:.!. !||| !! !!|||||| ! !! ! rArgIleAspLysIleGlnLysSerLeuAsnThrIleArgArgAspTrp---IleGlu 204487 : CCGGATCGACAAAATTCAGAAGAGTTTGAACACCATCAGACGCGACTGG---ATAGAG : 204540 122 : LysArgAlaSerAspArgGluValMetLeuLysAsnValLysPheGlyArgLeuIleA : 141 ! !! !..!:!!||| !:!!.!.! !..!!!.!.!|||.!!|||||| !:!: AlaThrAspGluAsnArgLeuIlePheArgSerLysAlaLysIleGlyArgArgValL 204541 : GCTACGGATGAAAATCGGTTGATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGT : 204600 142 : laCysLeuAlaAlaValGlyMetAsnValGlyValPheSerTyrIleValIleGlyPh : 160 ! :!!||||||!.! !||| !!! !|||! !!!.!!!|||! ..!||| ! euLeuIleAlaAlaAlaThrMetTyrGlyGlyGlyLeuCysTyrArgThrIleLeuPr 204601 : TGCTGATTGCAGCCGCCACTATGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCC : 204657 161 : eArgLysIleValPheHisValGlyAsnGluSerPheLeuMetTyrArgLeuProCys : 179 ! ! !! !! ! !||| ! !!!:!:! !! !!!: ! !||||||||| oLeuLeuArgGlyThrIleValThrProAspAsnValThrIleArgProLeuProCys 204658 : TTTGTTGAGAGGAACGATCGTAACACCTGATAACGTTACCATAAGGCCGTTGCCGTGT : 204714 180 : ProValTyrThrLysLeuLeuAsnValLysLeuSerProAlaAsnGluIleValPheA : 199 ||||||||| ......|||! !:!!! !|||||| ! !!|||||||||||| ProValTyrPheValPhePheAsnGluGlnArgSerProAsnTyrGluIleValPheI 204715 : CCGGTTtactttgttttctttaacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTA : 204774 200 : laLeuGlnValLeuSerGlyPheIleValAsnSerValThrValGlyAlaCysGlyLe : 218 !||||||:!!:!!:!!||||||:!!..! !!:!!|||! ! !|||.!!||||||:! leLeuGlnIleMetAlaGlyPheValThrTyrAlaValIleSerGlyThrCysGlyMe 204775 : TACTGCAAATTATGGCTGGTTTTGTTACTTACGCTGTTATCAGCGGCACATGCGGTAT : 204831 219 : uAlaAlaIleLeuAlaMetHisAlaCysGlyGlnLeuAsnValMetMetSerArgMet : 237 !..!|||:!:!!!!.!:!:|||||||||.!!..!|||!..:!!:!!:!!!:!!:!||| tCysAlaLeuPheValLeuHisAlaCysSerMetLeuArgIleLeuValAsnLysMet 204832 : GTGCGCGCTGTTCGTTCTCCACGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATG : 204888 238 : AspGluLeuValGlyAlaGlyValGluGluGlnArgValValLysLysLysLeuAlaA : 257 :!!! !||||||! ! !!.!! ! ! :!!! !:!!||| ! !:!|||:!!|||| AsnAlaLeuValAspLysAlaAspMetThrGluThrLeuValHisArgLysIleAlaA 204889 : AACGCACTTGTGGATAAGGCGGACATGACCGAGACACTTGTGCACAGGAAGATCGCTG : 204948 258 : spIleValGluHisHisLeuArg : 264 |||||||||||:!!!!. !!:! spIleValGluTyrGlnThrLys 204949 : ATATTGTTGAATATCAGACGAAG : 204971 vulgar: gi|805766364|ref|XP_012135240.1| 5 264 . KQ414889.1 204197 204971 + 293 M 113 339 G 1 0 M 145 435 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204198 204971 293 + . gene_id 17 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204198 204971 . + . KQ414889.1 exonerate:protein2genome:local exon 204198 204971 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 204198 204971 293 + . alignment_id 17 ; Query gi|805766364|ref|XP_012135240.1| ; Align 204198 6 339 ; Align 204537 120 435 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 269 Query range: 271 -> 392 Target range: 279924 -> 280450 272 : IleGluLysIleMetAsnLeuIleCysLeuValGluLeuValGlyCysThrValAsnI : 291 |||||| !:!!:!!||| !||||||!!!||||||:!!:!!|||||||||:!!|||| IleGluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsnI 279925 : ATCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACA : 279982 292 : leCysValLeuGluTyrTyrIleIleThr >>>> Target Intron 1 >>>> : 301 ||||| !!||| !||||||:!!:!!||| 89 bp leCysPheLeuThrTyrTyrLeuLeuThr++ ++ 279983 : TATGCTTTTTGACATATTATTTACTCACGgt.........................ag : 280099 302 : GluLysSerLysAspThrLeuAlaSerTyrAlaIleIleTyrAlaSerMetSerPheA : 320 :!!!!...! ! ! !!!!||| !!!:.!! ! !|||:!:!!!|||| GlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerLeuThrPheA 280100 : CAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTTTAACGTTCA : 280158 321 : snIlePheIlePheCysTyrIleGlyGluArgLeuThrGluGln >>>> Target : 335 ||:!!||||||.!!|||||||||||||||! !|||:!!|||||| 74 snValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 280159 : ACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt............ : 280205 336 : Intron 2 >>>> CysLysLysValGlyGluLysAlaTyrSerValGluTrpTyrA : 349 bp ||| !|||||||||! !..!.!!|||! !:!!!!:||||||| ++CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrA 280206 : .............agTGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATC : 280319 350 : rgLeuSerHisArgThrAlaLeuSerLeuValMetIleIleSerArgSerSerMetVa : 368 ||||| !! !:!! !|||! !.!!|||:!!:!!|||.!!:!! !|||!:! rgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSe 280320 : GTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTC : 280376 369 : lIleLysIleThrAlaGlyLysIleIleArgIleSerLeuAlaThrPheGlyAspVal : 387 !||||||:!!|||||||||||||||||| !:!!||||||::!!:!||| !!..!||| rIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSerVal 280377 : CATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTG : 280433 388 : SerIleLysThrLeu : 392 ||||||! !!.!||| SerIleIleAsnLeu 280434 : AGTATCATAAATTTA : 280450 vulgar: gi|805766364|ref|XP_012135240.1| 271 392 . KQ414889.1 279924 280450 + 269 M 29 87 5 0 2 I 0 85 3 0 2 M 34 102 5 0 2 I 0 70 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 279925 280450 269 + . gene_id 18 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 279925 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279925 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280100 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280099 280100 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280101 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280101 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280450 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280450 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 279925 280450 269 + . alignment_id 18 ; Query gi|805766364|ref|XP_012135240.1| ; Align 279925 272 87 ; Align 280101 301 102 ; Align 280277 335 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 230 Query range: 305 -> 389 Target range: 224347 -> 224664 306 : ThrLeuAlaSerTyrAlaIleIleTyrAlaSerMetSerPheAsnIlePheIlePheC : 325 !:! !!.!!!!||| !|||:!! ! !|||::::::||||||||||||||||||| SerAlaValThrTyrPheIleLeuLeuMetSerLeuThrPheAsnIlePheIlePheC 224348 : AGCGCGGTGACTTACTTCATACTACTCATGTCtcttactttcaatatttttatatttt : 224405 326 : ysTyrIleGlyGluArgLeuThrGluGln >>>> Target Intron 1 >>>> : 335 ||||||||||||||! !:!!.!!|||||| 65 bp ysTyrIleGlyGluLeuValAlaGluGln++ ++ 224406 : gttacatAGGAGAGCTGGTAGCTGAAcaggt.........................ag : 224498 336 : CysLysLysValGlyGluLysAlaTyrSerValGluTrpTyrArgLeuSerHisArgT : 354 |||:::|||:::|||::! !:!!|||! !:!!!!:||||||||||||!!! !.!! CysGluLysIleGlyGlnValSerTyrMetIleAspTrpTyrArgLeuThrGlyAsnL 224499 : tgtgaaaaaattggacaAGTGTCGTACATGATCGACTGGTATCGGTTGACTGGAAATA : 224557 355 : hrAlaLeuSerLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAl : 373 ! !|||!!!! !:!!:!!||||||:!!! !|||!:! !||||||:!:||||| ysLysLeuCysCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAl 224558 : AGAAACTATGCTGCATTCTGATAATCGCGATGTCCAATTCTTCGATAAAATTGACAGC : 224614 374 : aGlyLysIleIleArgIleSerLeuAlaThrPheGlyAspValSerIle : 389 ||||!!.!!::!!..!:!:!!!|||.!!||||||||||||||||||||| aGlyAsnMetValGluLeuCysLeuThrThrPheGlyAspValSerIle 224615 : GGGAAACATGGTCGAACTGTGTCTAACCACTTTCGGTGACGTAAGTATC : 224664 vulgar: gi|805766364|ref|XP_012135240.1| 305 389 . KQ414889.1 224347 224664 + 230 M 29 87 5 0 2 I 0 61 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224348 224664 230 + . gene_id 19 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224348 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224348 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224664 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224664 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224348 224664 230 + . alignment_id 19 ; Query gi|805766364|ref|XP_012135240.1| ; Align 224348 306 87 ; Align 224500 335 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 230 Query range: 299 -> 387 Target range: 272842 -> 273176 300 : ThrGluLysSerLysAspThrLeuAlaSerTyrAlaIleIleTyrAlaSerMetSerP : 319 |||!!: ! ..! .!.!:!|||.!!!!!||| !!!:||| ! !||||||:::| ThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerMetThrP 272843 : ACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCATgactt : 272900 320 : heAsnIlePheIlePheCysTyrIleGlyGluArgLeuThrGluGln >>>> Targ : 335 |||||||||||||| |||||||||||||||! !|||||||||::! heAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272901 : ttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt......... : 272950 336 : et Intron 1 >>>> CysLysLysValGlyGluLysAlaTyrSerValGluTrpT : 348 70 bp |||||||||:::|||||| !!.!|||! !..!.!.|||| ++CysLysLysIleGlyGluValValTyrMetThrAsnTrpT 272951 : ................agtgtaaaaaaattggcGAGGTAGTTTACATGACGAACTGGT : 273057 349 : yrArgLeuSerHisArgThrAlaLeuSerLeuValMetIleIleSerArgSerSerMe : 367 || !||| !! !!:! ! !|||..!|||:!!:!!||||||||||||!!!|||:! yrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCysSerVa 273058 : ACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATGCAGTGT : 273114 368 : tValIleLysIleThrAlaGlyLysIleIleArgIleSerLeuAlaThrPheGlyAsp : 386 :|||||||||||||||||||||!:!|||:!!! !!!:|||:!! !|||||||||||| lValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPheGlyAsp 273115 : TGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTCGGCGAT : 273171 387 : Val : 387 ||| Val 273172 : GTA : 273176 vulgar: gi|805766364|ref|XP_012135240.1| 299 387 . KQ414889.1 272842 273176 + 230 M 35 105 5 0 2 I 0 66 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272843 273176 230 + . gene_id 20 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272843 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272843 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272843 273176 230 + . alignment_id 20 ; Query gi|805766364|ref|XP_012135240.1| ; Align 272843 300 105 ; Align 273018 335 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 214 Query range: 305 -> 390 Target range: 219352 -> 219680 306 : ThrLeuAlaSerTyrAlaIleIleTyrAlaSerMetSerPheAsnIlePheIlePheC : 325 !:! !!.!!!!||| !|||:!! ! !|||:!::::||||||||||||||||||| SerAlaValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheC 219353 : AGTGCAGTGACATACATCATTCTACTTATATCCCTcactttcaacattttcatatttt : 219410 326 : ysTyrIleGlyGluArgLeuThrGluGln >>>> Target Intron 1 >>>> : 335 ||||||||||||||! !:!!.!!|||||| 73 bp ysTyrIleGlyGluIleValAlaGluGln++ ++ 219411 : gctaCATAGGAGAGATCGTTGCTGAACAggt.........................ag : 219511 336 : CysLysLysValGlyGluLysAlaTyrSerValGluTrpTyrArgLeuSerHisArgT : 354 |||:::|||:::|||||| :!!|||! !:!!|||||||||||||||!!! !:!! CysArgLysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysL 219512 : TGtaggaaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGA : 219570 355 : hrAlaLeuSerLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAl : 373 ! !|||!!! !|||:!!! !|||:!!! !|||!:! !||||||:!:||||| ysLysLeuTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAl 219571 : AAAAGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGC : 219627 374 : aGlyLysIleIleArgIleSerLeuAlaThrPheGlyAspValSerIleLys : 390 ||||!!.!!::!!..!:!:|||:!!::!|||||| !||||||||||||||| aGlyAsnMetValGluLeuSerIleSerThrPheThrAspValSerIleLys 219628 : CGGAAATATGGTCGAATTGTCTATCAGCACTTTTACCGACGTGAGtatcaaa : 219680 vulgar: gi|805766364|ref|XP_012135240.1| 305 390 . KQ414889.1 219352 219680 + 214 M 29 87 5 0 2 I 0 69 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219353 219680 214 + . gene_id 21 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 219353 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219353 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219680 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219680 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219353 219680 214 + . alignment_id 21 ; Query gi|805766364|ref|XP_012135240.1| ; Align 219353 306 87 ; Align 219513 335 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 213 Query range: 299 -> 393 Target range: 244447 -> 244835 300 : ThrGluLysSerLysAspThrLeuAlaSerTyrAlaIleIleTyrAlaSerMetSerP : 319 .!!|||!....! ! ! !||| !!!!||| !||| ! !!.!:!!!!: !! AlaGluSerAspAlaLysIleLeuIleThrTyrPheIleAlaLeuValAlaIleValS 244448 : GCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTATAGCACTCGTTGCTATTGTTT : 244505 320 : heAsnIlePheIlePheCysTyrIleGlyGluArgLeuThrGluGln >>>> Targ : 335 !|||! !||||||.!!|||||||||.!!!!:||||||||||||||| erAsnThrPheIleLeuCysTyrIleSerAspArgLeuThrGluGln++ 244506 : CTAATACATTTATACTCTGTTATATCAGCGACAGGCTGACAGAACAGgt......... : 244555 336 : et Intron 1 >>>> CysLysLysValGlyGluLysAlaTyrSerValGluTrpT : 348 106 bp ||| !|||||||||||| !!.!|||! !..!!!:|||| ++CysLeuLysValGlyGluValValTyrMetThrAspTrpT 244556 : ................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGT : 244698 349 : yrArgLeuSerHisArgThrAlaLeuSerLeuValMetIleIleSerArgSerSerMe : 367 || !||| !!!!.|||! ! !|||..!|||:!!:!!||||||!.!||||||!:!|| yrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMe 244699 : ATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACAT : 244755 368 : tValIleLysIleThrAlaGlyLysIleIleArgIleSerLeuAlaThrPheGlyAsp : 386 ||||:!!:!!|||||||||||||||:!!:!!!.!!!:|||||| !|||||||||||| tValValGluIleThrAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAsp 244756 : GGTCGTTGAAATCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGAT : 244812 387 : ValSerIleLysThrLeuIle : 393 |||||| !! ! !|||:!! ValSerGluThrLysLeuVal 244813 : GTAAGTGAAACTAAACTTGTT : 244835 vulgar: gi|805766364|ref|XP_012135240.1| 299 393 . KQ414889.1 244447 244835 + 213 M 35 105 5 0 2 I 0 102 3 0 2 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244448 244835 213 + . gene_id 22 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244448 244552 . + . KQ414889.1 exonerate:protein2genome:local exon 244448 244552 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244553 244554 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244553 244658 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244657 244658 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244659 244835 . + . KQ414889.1 exonerate:protein2genome:local exon 244659 244835 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244448 244835 213 + . alignment_id 22 ; Query gi|805766364|ref|XP_012135240.1| ; Align 244448 300 105 ; Align 244659 335 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 213 Query range: 299 -> 393 Target range: 254077 -> 254451 300 : ThrGluLysSerLysAspThrLeuAlaSerTyrAlaIleIleTyrAlaSerMetSerP : 319 ||||||!....! .!.! !||| !!!!||| !:!!! ! !!.!:!!:!: ! ThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValValS 254078 : ACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTGTTt : 254135 320 : heAsnIlePheIlePheCysTyrIleGlyGluArgLeuThrGluGln >>>> Targ : 335 ||| |||:::...|||||||||.!!!!:||||||||||||||| erAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 254136 : ctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt......... : 254185 336 : et Intron 1 >>>> CysLysLysValGlyGluLysAlaTyrSerValGluTrpT : 348 92 bp ||| !|||||||||||| !!.!|||! !..!!!:|||| ++CysLeuLysValGlyGluValValTyrMetThrAspTrpT 254186 : ................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGT : 254314 349 : yrArgLeuSerHisArgThrAlaLeuSerLeuValMetIleIleSerArgSerSerMe : 367 || !||| !!!!.|||! ! !|||..!|||:!!:!!||||||!!!||||||!:!:! yrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnVa 254315 : ATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGT : 254371 368 : tValIleLysIleThrAlaGlyLysIleIleArgIleSerLeuAlaThrPheGlyAsp : 386 !|||:!!:!!||||||||||||||||||......:::|||||| !|||||||||||| lValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp 254372 : GGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGAT : 254428 387 : ValSerIleLysThrLeuIle : 393 |||||| !! !.!|||:!! ValSerGluThrAsnLeuVal 254429 : GTAAGTGAAACTAATCTTGTT : 254451 vulgar: gi|805766364|ref|XP_012135240.1| 299 393 . KQ414889.1 254077 254451 + 213 M 35 105 5 0 2 I 0 88 3 0 2 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254078 254451 213 + . gene_id 23 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254078 254182 . + . KQ414889.1 exonerate:protein2genome:local exon 254078 254182 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254183 254184 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254183 254274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254273 254274 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254275 254451 . + . KQ414889.1 exonerate:protein2genome:local exon 254275 254451 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254078 254451 213 + . alignment_id 23 ; Query gi|805766364|ref|XP_012135240.1| ; Align 254078 300 105 ; Align 254275 335 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 208 Query range: 14 -> 213 Target range: 294675 -> 295275 15 : GlnAspTyrGluTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyValT : 34 .!.||| ! ! !!|||:!!:!!! ! !||| !!.!.|||||||||||||||:!!| AsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuT 294676 : AACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTT : 294733 35 : rpProArgAla<->SerThrAlaSerIleAlaGluLysIleLeuAlaIleValLeuAs : 52 |||||! ! ! ||| !.!!|||! ! !.!.|||:!!|||:!!|||:!!|||! rpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIl 294734 : GGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGAT : 294790 53 : nValAlaCysHisValLeuIleIlePheThrPheValProCysLeuLeuPheIleLeu : 71 !!.! !||| :!! !:!!:!:|||..!!!.||||||||| !! !||| !:!! eAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCysVal 294791 : CGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTA : 294847 72 : PheGluGluAlaSerPheGlnThrArgIleLysAlaIleGlyProMetSerHisTrpI : 91 |||.!.! ::: ::: ::!!!:||| !:!:||||||:!: !:!!! ! PheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerM 294848 : TTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTA : 294907 92 : leMetGlyGluLeuAsnTyrCysPheLeuThrMetArgGlyGlnAspIleLeuHisCy : 110 !::!:..! !|||!..||| !!! !|||..!:!!!:! !! ! .!! !||||| etLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCy 294908 : TGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTG : 294964 111 : sIleGluHisIleGlySerAspTrpGlnThrValLysArgAlaSerAspArgGluVal : 129 ||||||| !!|||! !!:!||||||:!! !:!! ! !.! !!..! !!|||! !:!! sIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIle 294965 : CATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATC : 295021 130 : MetLeuLysAsnValLysPheGlyArgLeuIleAlaCysLeuAlaAlaValGlyMetA : 149 |||:!!||||||!.!! ! !! !!:! !!!:.!! ! ! !.!!:!! !!!: MetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleIleT 295022 : ATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCT : 295081 150 : snValGlyValPheSerTyrIleValIleGlyPheArgLysIleValPheHisValGl : 168 !! !..!!.! ! |||||| !!.!|||! ! !.. yrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGluAs 295082 : ACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGAGAA : 295138 169 : yAsnGluSerPheLeuMetTyrArgLeuProCysProValTyrThrLysLeuLeuAsn : 187 !!!.:!!!:! ! !!!: ! !|||||| !|||! !||| ! !!!!:!!:!! nLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheValAsp 295139 : CAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGAC : 295195 188 : ValLysLeuSerProAlaAsnGluIleValPheAlaLeuGlnValLeuSerGlyPheI : 207 !.! ! ! !||||||.!! !!||||||:!! .!!! !! !!:!!! !..!|||. AlaTyrSerSerProThrTyrGluIleIleArgThrHisLeuPheValTyrSerPheP 295196 : GCTTATTCCAGTCCTACCTACGAGATCATAAGAACTCATCTCTTTGTTTACTCGTTCT : 295255 208 : leValAsnSerValThrVal : 213 !!||||||!.!..! !||| heValAsnLysThrGlyVal 295256 : TCGTCAACAAAACTGGTGTC : 295275 vulgar: gi|805766364|ref|XP_012135240.1| 14 213 . KQ414889.1 294675 295275 + 208 M 23 69 G 0 3 M 176 528 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294676 295275 208 + . gene_id 24 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294676 295275 . + . KQ414889.1 exonerate:protein2genome:local exon 294676 295275 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294676 295275 208 + . alignment_id 24 ; Query gi|805766364|ref|XP_012135240.1| ; Align 294676 15 69 ; Align 294748 38 528 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 259 -> 389 Target range: 300593 -> 302042 260 : GluHisHisLeuArgThrLeuSerPheValTrpTyrIleGluLysIleMetAsnLeuI : 279 :!!||| ! !..!!.!! !!!!|||!.! ! !!:!!|||:!!! !:!!..! !. LysHisValHisGluAsnCysArgPheAlaLysAsnValGluGluThrLeuArgAspP 300594 : AAGCATGTGCACGAAAATTGCAGATTTGCAAAGAACGTTGAGGAAACTTTGCGTGACT : 300651 280 : leCysLeuValGluLeuValGlyCysThrValAsnIleCysValLeuGluTyrTyrIl : 298 !!||||||||||||:!! !!! !! !|||:!!! !:!:|||:!!|||||||||||| heCysLeuValGluIlePheGluSerThrLeuIleLeuCysLeuLeuGluTyrTyrCy 300652 : TCTGCTTAGTGGAAATCTTCGAGTCCACGCTGATTTTGTGTTTGCTCGAATACTACTG : 300708 299 : eIle >>>> Target Intron 1 >>>> ThrGluLysSerLysAspThrLeuA : 308 !:!: 973 bp ! !:!!!:!!..||||||:!!| sLeu++ ++GluTrpGlnAsnSerAspThrIleA 300709 : TTTGgt.........................agGAATGGCAAAATAGCGACACGATCG : 301711 309 : la<-><->SerTyrAlaIleIleTyrAlaSerMetSerPheAsnIlePheIlePheCy : 325 || !!!!:! !! !:!:! .!!|||.!.!!!|||||||||||||||||||| laMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAsnIlePheIlePheCy 301712 : CTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATATTCATATTCTG : 301768 326 : sTyrIleGlyGluArgLeuThrGluGln >>>> Target Intron 2 >>>> C : 335 |||||||||||||! !|||:!!|||||| 80 bp | sTyrIleGlyGluIleLeuSerGluGln++ ++C 301769 : CTACATCGGCGAGATTCTTTCCGAACAGgt.........................agT : 301878 336 : ysLysLysValGlyGluLysAlaTyrSerValGluTrpTyrArgLeuSerHisArgTh : 354 ||!..:!!:!!|||..! !:!!|||..!:!!!!:||||||!.!||| !! !:!! ysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysAr 301879 : GTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAG : 301935 355 : rAlaLeuSerLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAla : 373 !|||! !..!|||:!!:!::!!! ! !! !|||..! ! |||:!!|||||| gAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAla 301936 : AGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCA : 301992 374 : GlyLysIleIleArgIleSerLeuAlaThrPheGlyAspValSerIle : 389 |||||||||||| !:!!|||||| !||||||.!!..!|||!:!:!! GlyLysIleIleAspLeuSerLeuAsnThrPheSerSerValAsnVal 301993 : GGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTAAATGTC : 302042 vulgar: gi|805766364|ref|XP_012135240.1| 259 389 . KQ414889.1 300593 302042 + 204 M 40 120 5 0 2 I 0 969 3 0 2 M 9 27 G 0 6 M 26 78 5 0 2 I 0 76 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300594 302042 204 + . gene_id 25 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300594 300713 . + . KQ414889.1 exonerate:protein2genome:local exon 300594 300713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300714 300715 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300714 301686 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301685 301686 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302042 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302042 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300594 302042 204 + . alignment_id 25 ; Query gi|805766364|ref|XP_012135240.1| ; Align 300594 260 120 ; Align 301687 300 27 ; Align 301720 309 78 ; Align 301878 335 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 190 Query range: 9 -> 266 Target range: 194144 -> 194900 10 : AsnThrArgTyrLeuGlnAspTyrGluTyrSerIleGlnLeuAsnArgTrpPheLeuL : 29 |||..!!.!||| ! !||| !||||||:!!:!!!:!:!! !:! !.!!|||! AsnValAsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuLeuT 194145 : AACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAA : 194202 30 : ysProIleGlyValTrpProArgAlaSerThrAlaSerIleAlaGluLysIleLeuAl : 48 !|||||||||:!!|||||||||! !..! |||:!! !!!:!:!:!!! ! hrProIleGlyIleTrpProArgGluAsp------SerLeuArgAspArgValArgLe 194203 : CACCGATCGGTATCTGGCCAAGGGAGGAT------TCTCTTCGCGACAGAGTCCGACT : 194253 49 : aIleValLeuAsnValAlaCysHisValLeuIleIlePheThrPheValProCysLeu : 67 !.!!!.!! !!.!! !!.! ! !!.!|||!!: !||| !.!.|||||| !:!! uPheAlaGlnThrGlyValValPheAlaLeuMetCysPheLeuLeuValProHisVal 194254 : GTTCGCTCAAACTGGCGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTG : 194310 68 : LeuPheIleLeuPheGluGluAlaSerPheGlnThrArgIleLysAlaIleGlyProM : 87 :!!!:!! !! !|||!!: ! !..!.!. !! ! !!!:|||!.!|||!.! !!. IleTyrThrTyrPheAspCysGluAspLeuThrArgTyrMetLysValIleAlaAlaG 194311 : ATCTACACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGC : 194370 88 : etSerHisTrpIleMetGlyGluLeuAsnTyrCysPheLeuThrMetArgGlyGlnAs : 106 .. ! ! ! :!::!!!.! :!!!!.!:!!! :!!! !:!!!.! !!:!!!! lnValPheSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnArgLysGl 194371 : AAGTGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGA : 194427 107 : pIleLeuHisCysIleGluHisIleGlySerAspTrpGlnThrValLysArgAlaSer : 125 :||| ! !|||:!: !.!.!!:! !!!!.!.!::::! !|||:!! !!! !..! uIleArgPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCysGluGlu 194428 : GATCAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAG : 194484 126 : AspArgGluValMetLeuLysAsnValLysPheGlyArgLeuIleAlaCysLeuAlaA : 145 ||||||:!!|||||| !!!. !!.!|||.!!||||||!!!.!!.!! !||| ! AspArgGlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrL 194485 : GATCGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACT : 194544 146 : laValGlyMetAsnValGlyValPheSerTyrIleValIleGlyPheArgLysIleVa : 164 !! ! ! !!! !|||!.!!!. !!||| !:!!||| ! !! !! ! ! euGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGl 194545 : TGGGACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGA : 194601 165 : lPheHisValGlyAsnGluSerPheLeuMetTyrArgLeuProCysProValTyrThr : 183 ! !||| !.!.!!:!:! ! !..! ! !||||||! ! ! ! !! ! uArgIleValLysGluAspAsnSerThrGlnIleProLeuProTyrLeuSerAsnTyr 194602 : GAGGATTGTCAAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGCAACTAT : 194658 184 : LysLeuLeuAsnValLysLeuSerProAlaAsnGluIleValPheAlaLeuGlnValL : 203 !!!!!! :!!:!! !|||||| ! !!||||||..!|||!.!! !|||:!!| ValPhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerGlnIleL 194659 : GTTTTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATAC : 194718 204 : euSerGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuAlaAlaIleLe : 222 ||! !.!! !|||:!! |||..!!.! !||| !! !.!!|||!.!|||! !:! euIleSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAlaThrIl 194719 : TGATTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTAT : 194775 223 : uAlaMetHisAlaCysGlyGlnLeuAsnValMetMetSerArgMetAspGluLeuVal : 241 ! !||||||..!|||||| !!!!.!.|||! ! !!!||||||!!: :!! eIleMetHisCysCysGlyLeuPheGluValThrSerArgArgMetGluThrIle--- 194776 : TATTATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGATGGAGACTATT--- : 194832 242 : GlyAlaGlyValGluGluGlnArgValValLysLysLysLeuAlaAspIleValGluH : 261 ..!||| !!:!! !:!!::! !:!||| !|||:!!|||:!! ------SerValProThrGlyLysAspIleArgGlyArgLeuArgAspValValGlnP 194833 : ------TCTGTGCCCACTGGGAAGGATATTCGGGGTAGACTTAGGGACGTCGTTCAGT : 194883 262 : isHisLeuArgThrLeu : 266 !||||||!:!.!!:!! heHisLeuLysAlaIle 194884 : TTCATCTGAAAGCAATT : 194900 vulgar: gi|805766364|ref|XP_012135240.1| 9 266 . KQ414889.1 194144 194900 + 190 M 29 87 G 2 0 M 200 600 G 3 0 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194145 194900 190 + . gene_id 26 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194145 194900 . + . KQ414889.1 exonerate:protein2genome:local exon 194145 194900 . + . insertions 0 ; deletions 5 KQ414889.1 exonerate:protein2genome:local similarity 194145 194900 190 + . alignment_id 26 ; Query gi|805766364|ref|XP_012135240.1| ; Align 194145 10 87 ; Align 194232 41 600 ; Align 194832 244 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 1 -> 117 Target range: 299638 -> 299989 2 : AsnSerSerAspLysLeuIleThrAsnThrArgTyrLeuGlnAspTyrGluTyrSerI : 21 !:!||| !||| ! !:!:! !||| !!.!|||! !.!.||| .!.|||!!!: SerSerValAspGlyGlnLeuArgAsnTyrHisTyrGlnAsnAspIleHisTyrThrL 299639 : AGCAGTGTTGACGGCCAATTGAGGAATTACCATTACCAAAATGACATACATTACACGC : 299696 22 : leGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProArgAla<->SerTh : 39 !:|||:!! !!:!|||!!.|||||||||||||||||||||! ! ! ! ..! euGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpArgLeuLeuAspGlnAr 299697 : TGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGCGATTGCTAGATCAACG : 299753 40 : rAlaSerIleAlaGluLysIleLeuAlaIleValLeuAsnValAlaCysHisValLeu : 58 !:!!|||! !||| ! :!!:!!:!!|||||||||! ..! !||| ! ! ! gSerSerLysLeuGluHisLeuValSerIleValLeuMetThrIleCysPheSerSer 299754 : TTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATGACAATATGCTTCTCCAGT : 299810 59 : IleIlePheThrPheValProCysLeuLeuPheIleLeuPheGluGluAlaSerPheG : 78 :!:.!!|||! ! !!:!!|||! ! !! !!:!|||!!!|||! !||| !|||.!.! LeuPhePheIleValLeuProSerGlyHisTyrIlePhePheAlaGluLysSerIleH 299811 : CTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCTTCGCGGAGAAAAGTATAC : 299870 79 : lnThrArgIleLysAlaIleGlyProMetSerHisTrpIleMetGlyGluLeuAsnTy : 97 !...!!:!:!:|||!.!.!!||||||:!:.!! !!! :!! ..! :!!!!.|| isValLysValLysValPheGlyProValGlyPheCysLeuSerSerIleValLysTy 299871 : ACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCATCGTCAAATA : 299927 98 : rCysPheLeuThrMetArgGlyGlnAspIleLeuHisCysIleGluHisIleGlySer : 116 ||||!:!||| !:!!!.!||| ! .!! !!..||||||:!!|||:!!! !!!! rCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCysIleGlnHisValGluArg 299928 : TTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGCATCCAACACGTCGAGAGA : 299984 117 : Asp : 117 ||| Asp 299985 : GAC : 299989 vulgar: gi|805766364|ref|XP_012135240.1| 1 117 . KQ414889.1 299638 299989 + 183 M 36 108 G 0 3 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299639 299989 183 + . gene_id 27 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299639 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299639 299989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299639 299989 183 + . alignment_id 27 ; Query gi|805766364|ref|XP_012135240.1| ; Align 299639 2 108 ; Align 299750 38 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 332 -> 387 Target range: 277548 -> 277713 333 : GluGlnCysLysLysValGlyGluLysAlaTyrSerValGluTrpTyrArgLeuSerH : 352 ..!||||||||||||||||||||| !!.!|||! !..!.!.|||||| !||| !! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 353 : isArgThrAlaLeuSerLeuValMetIleIleSerArgSerSerMetValIleLysIl : 371 !!!:! ! !|||!:!|||:!!:!:||||||||||||||||||:::||||||||||| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 372 : eThrAlaGlyLysIleIleArgIleSerLeuAlaThrPheGlyAspVal : 387 |||||||||||||:::|||::::::|||:!! !||||||||||||||| eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspVal 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTA : 277713 vulgar: gi|805766364|ref|XP_012135240.1| 332 387 . KQ414889.1 277548 277713 + 175 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277713 175 + . gene_id 28 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277549 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277713 175 + . alignment_id 28 ; Query gi|805766364|ref|XP_012135240.1| ; Align 277549 333 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 333 -> 388 Target range: 238625 -> 238790 334 : GlnCysLysLysValGlyGluLysAlaTyrSerValGluTrpTyrArgLeuSerHisA : 353 |||||| !|||||||||||| !!.!|||! !..!!!:|||||| !||| !!!!.| GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 354 : rgThrAlaLeuSerLeuValMetIleIleSerArgSerSerMetValIleLysIleTh : 372 ||! ! !|||..!|||:!!:!!||||||!.!||||||!:!:!!|||:!!|||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 373 : rAlaGlyLysIleIleArgIleSerLeuAlaThrPheGlyAspValSer : 388 ||||||||||:!!:!!!.!!!:|||||| !|||||||||||||||||| rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSer 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGT : 238790 vulgar: gi|805766364|ref|XP_012135240.1| 333 388 . KQ414889.1 238625 238790 + 170 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238790 170 + . gene_id 29 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238790 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238790 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238790 170 + . alignment_id 29 ; Query gi|805766364|ref|XP_012135240.1| ; Align 238626 334 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 330 -> 392 Target range: 214851 -> 215037 331 : LeuThrGluGlnCysLysLysValGlyGluLysAlaTyrSerValGluTrpTyrArgL : 350 :!! !:!!||||||||||||||||||||| !:!!|||! !:!!||||||||||||| MetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrArgL 214852 : ATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACCGAT : 214909 351 : euSerHisArgThrAlaLeuSerLeuValMetIleIleSerArgSerSerMetValIl : 369 || !! !!.!! ! !|||!!!! !:!!:!!|||!!::!!! !|||!:! !:! euProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSerVa 214910 : TGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATCCGT : 214966 370 : eLysIleThrAlaGlyLysIleIleArgIleSerLeuAlaThrPheGlyAspValSer : 388 !|||.!!|||||||||!!.!!::!!..!:!:|||:!!::!||||||.!!..!|||||| lLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerValSer 214967 : CAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTAAGT : 215023 389 : IleLysThrLeu : 392 |||||| !||| IleLysGlnLeu 215024 : ATCAAACAACTT : 215037 vulgar: gi|805766364|ref|XP_012135240.1| 330 392 . KQ414889.1 214851 215037 + 158 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214852 215037 158 + . gene_id 30 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214852 215037 . + . KQ414889.1 exonerate:protein2genome:local exon 214852 215037 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214852 215037 158 + . alignment_id 30 ; Query gi|805766364|ref|XP_012135240.1| ; Align 214852 331 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 315 -> 393 Target range: 297514 -> 297821 316 : SerMetSerPheAsnIlePheIlePheCysTyrIleGlyGluArgLeuThrGluGln : 335 |||!!:!!!||||||||||||:!!!!.|||:!! !||||||! !|||..!|||:!! SerIleThrPheAsnIlePheValLeuCysHisAlaGlyGluLeuLeuValGluGlu+ 297515 : TCGATCACTTTTAATATATTCGTATTATGTCATGCAGGTGAACTTCTTGTCGAGGAGg : 297572 336 : >>>> Target Intron 1 >>>> CysLysLysValGlyGluLysAlaTyrSer : 344 73 bp ..!:!!||| !!|||.!. !||||||!:! + ++AlaGluLysPheGlyAsnAlaAlaTyrAsn 297573 : t.........................agGCTGAAAAATTCGGCAATGCAGCTTATAAC : 297672 345 : ValGluTrpTyrArgLeuSerHisArgThrAlaLeuSerLeuValMetIleIleSerA : 364 :!!|||||||||!.!||| !!! !.!! !||||||..!||||||:!:!!:|||.!!! IleGluTrpTyrAsnLeuProProAsnArgAlaLeuAspLeuValLeuMetIleGlyI 297673 : ATCGAATGGTACAACTTACCGCCAAACAGGGCTCTCGATCTGGTGTTAATGATCGGTA : 297732 365 : rgSerSerMetValIleLysIleThrAlaGlyLysIleIleArgIleSerLeuAlaTh : 383 !:!!!.!.!. ! !:!:!!|||...|||||||||... ||||||:!! !|| leAlaLysPheProProArgLeuThrGlyGlyLysIlePheAspIleSerIleAsnTh 297733 : TAGCAAAATTTCCACCGAGGCTCACAggtggaaaaatattcgatatatCGATAAACAC : 297789 384 : rPheGlyAspValSerIleLysThrLeuIle : 393 ||||.!!! !||| !!! ::::::|||||| rPheSerAlaValArgArgGlnSerLeuIle 297790 : GTTCAGTGCCGTACGTAgacaaagtttaatt : 297821 vulgar: gi|805766364|ref|XP_012135240.1| 315 393 . KQ414889.1 297514 297821 + 157 M 19 57 5 0 2 I 0 69 3 0 2 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297515 297821 157 + . gene_id 31 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 297515 297571 . + . KQ414889.1 exonerate:protein2genome:local exon 297515 297571 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 297572 297573 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 297572 297644 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 297643 297644 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 297645 297821 . + . KQ414889.1 exonerate:protein2genome:local exon 297645 297821 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297515 297821 157 + . alignment_id 31 ; Query gi|805766364|ref|XP_012135240.1| ; Align 297515 316 57 ; Align 297645 335 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 333 -> 387 Target range: 264723 -> 264885 334 : GlnCysLysLysValGlyGluLysAlaTyrSerValGluTrpTyrArgLeuSerHisA : 353 ||||||||||||||||||||| !!.!|||! ! !.!.|||||| !||| !!:!!! GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 354 : rgThrAlaLeuSerLeuValMetIleIleSerArgSerSerMetValIleLysIleTh : 372 :! ! !|||..!|||:!!:!:||||||! !|||||||||:!!|||.!!|||.!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 373 : rAlaGlyLysIleIleArgIleSerLeuAlaThrPheGlyAspVal : 387 |||||||||||||:!!!.!!!:|||:!! !||||||.!!|||||| rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: gi|805766364|ref|XP_012135240.1| 333 387 . KQ414889.1 264723 264885 + 156 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264885 156 + . gene_id 32 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264885 156 + . alignment_id 32 ; Query gi|805766364|ref|XP_012135240.1| ; Align 264724 334 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 184 -> 241 Target range: 202712 -> 202883 185 : LeuLeuAsnValLysLeuSerProAlaAsnGluIleValPheAlaLeuGlnValLeuS : 204 :!!:!!:!!|||!:!! !||||||!.!||||||||| !!|||:!!:!!!:!:!!:!!: IleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleValA 202713 : ATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAG : 202770 205 : erGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuAlaAlaIleLeuAl : 223 !!! !.!!:!!:!!:!!.!!|||||||||||||||||| !!|||.!!|||:!:!!!|| laValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAl 202771 : CTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGC : 202827 224 : aMetHisAlaCysGlyGlnLeuAsnValMetMetSerArgMetAspGluLeuVal : 241 |:!:|||! !|||||||||:!!:!!|||:!!|||:!! !!:!!!!:.!.|||:!! aValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMet 202828 : GGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATG : 202883 vulgar: gi|805766364|ref|XP_012135240.1| 184 241 . KQ414889.1 202712 202883 + 144 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202713 202883 144 + . gene_id 33 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202713 202883 . + . KQ414889.1 exonerate:protein2genome:local exon 202713 202883 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202713 202883 144 + . alignment_id 33 ; Query gi|805766364|ref|XP_012135240.1| ; Align 202713 185 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 332 -> 387 Target range: 283273 -> 283438 333 : GluGlnCysLysLysValGlyGluLysAlaTyrSerValGluTrpTyrArgLeuSerH : 352 ..!||||||||||||||||||||| !!.!|||! !..!.!.! !!:! !||| !! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 353 : isArgThrAlaLeuSerLeuValMetIleIleSerArgSerSerMetValIleLysIl : 371 !!!:! ! !|||!:!|||:!!:!:||||||||||||||||||:::||||||||||| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 372 : eThrAlaGlyLysIleIleArgIleSerLeuAlaThrPheGlyAspVal : 387 |||||||...|||:::|||::::::||| ! !||||||! !|||||| eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspVal 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTA : 283438 vulgar: gi|805766364|ref|XP_012135240.1| 332 387 . KQ414889.1 283273 283438 + 141 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283438 141 + . gene_id 34 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283438 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283438 141 + . alignment_id 34 ; Query gi|805766364|ref|XP_012135240.1| ; Align 283274 333 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 337 -> 390 Target range: 206251 -> 206410 338 : ValGlyGluLysAlaTyrSerValGluTrpTyrArgLeuSerHisArgThrAlaLeuS : 357 |||||| !! !:!!! !!!!|||.!.|||||||||||| !!:!!||| !|||! !| ValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgS 206252 : GTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCT : 206309 358 : erLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysIl : 376 ||:!!:!!:!!||||||:!!! !|||!:! !||||||:!!||||||||||||!! erMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMe 206310 : CTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAAT : 206366 377 : eIleArgIleSerLeuAlaThrPheGlyAspValSerIleLys : 390 :.!!..!!!:|||||||||!:!||| !|||||||||!!:||| tPheGluMetSerLeuAlaSerPheThrAspValSerMetLys 206367 : GTTCGAAATGTCTTTAGCTAGTTTCACCGATGTAAGTATGAAA : 206410 vulgar: gi|805766364|ref|XP_012135240.1| 337 390 . KQ414889.1 206251 206410 + 133 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206252 206410 133 + . gene_id 35 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206252 206410 . + . KQ414889.1 exonerate:protein2genome:local exon 206252 206410 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206252 206410 133 + . alignment_id 35 ; Query gi|805766364|ref|XP_012135240.1| ; Align 206252 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 329 -> 393 Target range: 292377 -> 292569 330 : ArgLeuThrGluGlnCysLysLysValGlyGluLysAlaTyrSerValGluTrpTyrA : 349 |||:!! ! ! ||| !!!..:!!:!!!.!.!. :!!|||..!..!|||||||||! ArgValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrA 292378 : CGAGTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACA : 292435 350 : rgLeuSerHisArgThrAlaLeuSerLeuValMetIleIleSerArgSerSerMetVa : 368 .!||| !!...|||! !|||! !..!:!!|||:!!:!::!!:!!! !!!!!.! snLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisPr 292436 : ATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCC : 292492 369 : lIleLysIleThrAlaGlyLysIleIleArgIleSerLeuAlaThrPheGlyAspVal : 387 !||||||:!!|||||||||||||||.!! !:!!|||||| !|||||||||! !||| oIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaVal 292493 : GATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTA : 292549 388 : SerIleLysThrLeuIle : 393 !! !..!! !|||:!! ArgGluSerLysLeuVal 292550 : CGTGAATCAAAACTAGTC : 292569 vulgar: gi|805766364|ref|XP_012135240.1| 329 393 . KQ414889.1 292377 292569 + 117 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292378 292569 117 + . gene_id 36 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292378 292569 . + . KQ414889.1 exonerate:protein2genome:local exon 292378 292569 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292378 292569 117 + . alignment_id 36 ; Query gi|805766364|ref|XP_012135240.1| ; Align 292378 330 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 305 -> 334 Target range: 214653 -> 214740 306 : ThrLeuAlaSerTyrAlaIleIleTyrAlaSerMetSerPheAsnIlePheIlePheC : 325 ||| !!.!!!!|||!.!:!::!:||| !|||::::::||||||||||||||||||| ThrThrValThrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheC 214654 : ACTACAGTAACTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatatttt : 214711 326 : ysTyrIleGlyGluArgLeuThrGluGln : 334 ||||||||||||||! !:!!:!!|||||| ysTyrIleGlyGluLeuValSerGluGln 214712 : gttaCATAGGCGAGCTTGTGTCTGAACAG : 214740 vulgar: gi|805766364|ref|XP_012135240.1| 305 334 . KQ414889.1 214653 214740 + 103 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214654 214740 103 + . gene_id 37 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214654 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214654 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214654 214740 103 + . alignment_id 37 ; Query gi|805766364|ref|XP_012135240.1| ; Align 214654 306 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795896|ref|XP_012143135.1| PREDICTED: uncharacterized protein LOC100875381 [Megachile rotundata] Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 163 -> 265 Target range: 1644 -> 1950 164 : LeuValLeuPheValSerIleProLeuSerSerProAlaLeuAspPheIleAlaProLeuAs : 184 :!!:!!||||||||||||! |||:!!!!! !!! ! !||||||.!!:!! !||| !|| ValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProLysAs 1645 : GTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAAAA : 1705 185 : nGluThrArgThrLysLeuProLeuPheLysLeuAsnTyrIleValAspMetArgAspHisP : 205 ||||:!!||| ! ! ! !:!!!:! ! ! !!|||.!!..!||| !!.! ! :!! nGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrA 1706 : CGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACG : 1768 206 : heTyrIleValTyrLeuHisSerAlaTrpCysSerLeuIleIleValLeuIleValThrThr : 225 ! !:!! ! !|||! !|||! ! !|||:!::!: !!! !:!: ! !.!! spValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrPheAla 1769 : ACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCT : 1828 226 : MetAspSerLeuTyrMetValIleIleHisTyrAlaCysGlyLeuPheAlaLeuCysGlyTy : 246 |||!!! !|||!!: !:!!:!:!!.:!!!.!|||||||||!!.|||:!!! !||| CysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly** 1829 : TGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgta : 1891 247 : rGlnValLysLysAlaThrGluMetValGlyProLysAlaIleProThrIleAsnThr : 265 :::::::::... ..! !:!!..!||| ::! ! !! !|||:!!||| *LysIleArgSerAsnAspSer***LeuAsnProPheSerAlaAsnLysIleAspThr 1892 : aaaaattcgatcgaacgattCGTAGCTCAACCCTTTCAGTGCCAACAAAATCGATACG : 1950 vulgar: gi|805795896|ref|XP_012143135.1| 163 265 . KQ414921.1 1644 1950 + 129 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1645 1950 129 + . gene_id 1 ; sequence gi|805795896|ref|XP_012143135.1| ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1645 1950 . + . KQ414921.1 exonerate:protein2genome:local exon 1645 1950 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1645 1950 129 + . alignment_id 1 ; Query gi|805795896|ref|XP_012143135.1| ; Align 1645 164 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 240 Query range: 271 -> 367 Target range: 2970 -> 3320 272 : LysGlnLeuSerLysMetLysProCysAlaGlnPheTyrGluTyrIleValPheLeuThrIl : 292 ||||||:!!|||!!. !:!! ! !|||:!!||| !:!! !! !..!|||:!!..!|| LysGlnValSerAsnSerGluIleAsnAlaGluPheAlaLysAspCysThrPheIleValIl 2971 : AAACAGGTGTCGAACTCGGAGATTAACGCGGAGTTTGCCAAGGATTGCACATTTATCGTGAT : 3031 293 : eGlnLeuLeuHisIlePhePheLeuAlaIleGlnGlyGlnPheMetIleAsnArgThrAspI : 313 |||||||:!!||||||.!!!:!|||.!!:!!||||||||||||:!!|||:!! !!.!!!: eGlnLeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAspAlaAsnGluG 3032 : TCAATTGGTACACATACTTTACCTAACTCTTCAAGGACAATTCGTGATCGACGCGAACGAGG : 3094 314 : leValTyrAsnGln{Il} >>>> Target Intron 1 >>>> {e}TyrGluGlyGln : 322 !:!!!:!.!...!{||} 62 bp {|}|||...!.! ! luIlePheGluSer{Il}++ ++{e}TyrSerAlaLeu 3095 : AAATCTTCGAATCG{AT}gt.........................ag{A}TACAGCGCTTTG : 3183 323 : TrpTyrAsnSerValProLysThrGlnGluLeuPheIleLeuAlaLeuArgThrAlaMetAs : 343 ||||||||||||! ! !!:!||||||..!||||||:!!||||||||||||!.!..!:!::: TrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeuArgAsnCysLeuSe 3184 : TGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGTTAAGAAATTGTCTATC : 3246 344 : nProProGlnIleThrAlaGlyGlyValIleAlaMetAsnLeuGlnThrPheAlaGluValV : 364 ! !!|||||||||||||||||||||:!!|||.!!||||||||||||!:!|||:!!||||||. rAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGlnSerPheSerGluValT 3247 : TGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAAAGTTTCTCAGAGGTAA : 3309 365 : alLysValSer : 367 .!::: !||| hrArgSerSer 3310 : CACGTTCATCG : 3320 vulgar: gi|805793799|ref|XP_012142565.1| 271 367 . KQ414921.1 2970 3320 + 240 M 46 138 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 2971 3320 240 + . gene_id 1 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation + KQ414921.1 exonerate:protein2genome:local cds 2971 3110 . + . KQ414921.1 exonerate:protein2genome:local exon 2971 3110 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 3111 3112 . + . intron_id 1 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 3111 3172 . + . intron_id 1 KQ414921.1 exonerate:protein2genome:local splice3 3171 3172 . + . intron_id 0 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 3173 3320 . + . KQ414921.1 exonerate:protein2genome:local exon 3173 3320 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 2971 3320 240 + . alignment_id 1 ; Query gi|805793799|ref|XP_012142565.1| ; Align 2971 272 138 ; Align 3174 319 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 210 Query range: 127 -> 216 Target range: 1623 -> 1890 128 : IleAlaSerAlaTyrPheAlaMetMetLeuPheLeuGlnMetProTrpTrpProArgValAl : 148 |||!.!!:!||| ! !!..!:!:!!:||||||:!!..!! !||| ! |||!.!:!! IleValAsnAlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLe 1624 : ATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTT : 1684 149 : aAspIleLeuMetProLeuAsnAlaSerArgProArgGlyTyrIlePheProAlaTyrTyrT : 169 !|||||||||:!:||| !|||! !|||||| ! !!.!||||||!:!||||||||||||! uAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrP 1685 : GGACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATT : 1747 170 : yrValAspAspAspLysTyrTyrTyrTrpIleIleAlaTyrSerSerIleAlaThrIleIle : 189 :!..!|||!!: !!|||||| !! !::||||||.!!:!!! !:!! !!.!! !:!::!: heThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuVal 1748 : TCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTG : 1807 190 : ThrValCysGlyTyrIleAlaCysAspIleTyrPheIleTyrAlaValGlnHisAlaCysGl : 210 ..! !!! !! !|||.!!|||||||||! ! !!:!||||||!.!|||||||||!.!||||| ValPheTyrValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGl 1808 : GTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGG : 1870 211 : yLeuPheThrValAlaGly : 216 ||||!!..!!|||:!!||| yLeuLeuAlaValSerGly 1871 : ATTGTTGGCCGTGTCCGGg : 1890 vulgar: gi|805793799|ref|XP_012142565.1| 127 216 . KQ414921.1 1623 1890 + 210 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1624 1890 210 + . gene_id 2 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1624 1890 . + . KQ414921.1 exonerate:protein2genome:local exon 1624 1890 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1624 1890 210 + . alignment_id 2 ; Query gi|805793799|ref|XP_012142565.1| ; Align 1624 128 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 0 -> 51 Target range: 367 -> 520 1 : MetAspAlaValGluIleGlnGluArgTyrLeuLysIleThrLysArgTyrLeuValLeuGlyG : 22 |||||||||:!! :!!:!!|||!:!|||:!!|||:!:||||||! !! ! ! !!!!..!| MetAspAlaIleThrLeuGluGluGlnTyrIleLysLeuThrLysIleCysAlaGlnPheSerG 368 : ATGGACGCGATCACTCTAGAGGAGCAATACATCAAGTTGACCAAGATATGCGCCCAATTCTCCG : 431 23 : lyIleTrpProThrGlnLysLysSerAlaGlnTyrIleTyrArgValIleIleTyrIleValMe : 43 ||.!!|||||| !|||!..||| !:!!:!!|||:!!! |||:!!|||! |||! !:!!:! lyPheTrpProTrpGlnSerLysLeuSerLysTyrValSerArgIleIleThrTyrThrIleVa 432 : GTTTCTGGCCATGGCAGAGCAAACTGTCGAAATACGTATCGCGAATAATAACGTACACCATCGT : 494 44 : tValProThrValLeuAlaGlnLeu : 51 : !! !!..!:!!!!!.!!|||:!! lPheThrValLeuPheThrGlnVal 495 : TTTCACGGTTCTCTTCACGCAGGTG : 520 vulgar: gi|805793799|ref|XP_012142565.1| 0 51 . KQ414921.1 367 520 + 111 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 368 520 111 + . gene_id 3 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 368 520 . + . KQ414921.1 exonerate:protein2genome:local exon 368 520 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 368 520 111 + . alignment_id 3 ; Query gi|805793799|ref|XP_012142565.1| ; Align 368 1 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805798911|ref|XP_012143985.1| PREDICTED: uncharacterized protein LOC100876205 [Megachile rotundata] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 244 Query range: 301 -> 412 Target range: 807257 -> 807590 302 : GlyPheGlnPheIleLeuAlaLeuAsnThrArgAsnIleIleIleValLeuLysThrL : 321 |||||| |||:!::!!||||||!:!|||!:!:!!! !:!! !!.!|||!:!!:!! GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 322 : euPheIleLeuLeuThrValLeuIleGlnLeuTyrSerTyrSerTyrMetGlyAspTy : 340 !! !!:!::!!:!!|||:!!||||||||||||||| !|||:!!||| !|||:!! heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 341 : rLeuLysSerGlnMetAspGlyIleGlyTyrSerLeuTyrSerCysSerTrpTyrSer : 359 |||:!!|||!:!! !!:! !|||!.! ! :!! !|||..!! ! !|||||| !! rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 360 : LeuProAlaAsnValAlaLysAsnIleValLeuValIleLeuArgAlaGlnIleProV : 379 ! !! !!.!:!!!.!|||!:!:!!:!!:!!|||:!!|||! !|||!.!.!. ||| CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 380 : alHisLeuThrAlaGlyLysPhePheValValAsnLeuGluThrPheMetSerIleLe : 398 !!.!:!!||||||||||||||| !! !:!!|||||| ||||||! !..!||||| yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 399 : uLysThrSerMetSerTyrLeuSerIleLeuArgValMetIle : 412 ||||.!!||| ||||||||||||:!!:!!!:!||||||!!: uLysAlaSerGlySerTyrLeuSerValMetLysValMetMet 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATG : 807590 vulgar: gi|805798911|ref|XP_012143985.1| 301 412 . KQ414940.1 807257 807590 + 244 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807590 244 + . gene_id 1 ; sequence gi|805798911|ref|XP_012143985.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807590 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807590 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807590 244 + . alignment_id 1 ; Query gi|805798911|ref|XP_012143985.1| ; Align 807258 302 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 295 -> 358 Target range: 807389 -> 807578 296 : AsnLysIleGlyGluAlaIleTyrMetSerAsnTrpTyrTyrLeuAlaAspLysAspI : 315 .!.:!!|||!.!:!!||| !||| ||| !|||||| !! ! !! ! ! GluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaA 807390 : GAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAG : 807447 316 : leHisAsnLeuMetMetIleIleSerArgSerCysValGluThrLysIleThrAlaGl : 334 !...:!!|||:!::!!|||||| !|||.!! ! ! !:::||||||||||| laArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGl 807448 : CCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGG : 807504 335 : yLysIleValHisMetSerPheTyrThrLeuAlaSerValIleLysSerSerPheAla : 353 ||||.!!|||! |||!:!.!!!:!|||!!! !..!:!!:!:|||:!!||| !:!! yLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySer 807505 : AAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCG : 807561 354 : TyrThrAsnIleLeu : 358 ||| !::!:!!:!! TyrLeuSerValMet 807562 : TATCTGTCTGTAATG : 807578 vulgar: gi|805766376|ref|XP_012135244.1| 295 358 . KQ414940.1 807389 807578 + 102 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807390 807578 102 + . gene_id 1 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807390 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807390 807578 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807390 807578 102 + . alignment_id 1 ; Query gi|805766376|ref|XP_012135244.1| ; Align 807390 296 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 311 -> 387 Target range: 807317 -> 807545 312 : IleIleTyrAlaSerMetSerPheAsnIlePheIlePheCysTyrIleGlyGluArgL : 331 :!!:!: !.!!!!:!! !.!!.!.:!:!:!:!!!:!..!||| |||.!.! !| ValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrL 807318 : GTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACAC : 807375 332 : euThrGluGlnCysLysLysValGlyGluLysAlaTyrSerValGluTrpTyrArgLe : 350 || !..!!:! !:!!:!!:!!!.!:!! ||||||..! ! |||||||||! euGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCy 807376 : TCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTG : 807432 351 : uSerHisArgThrAlaLeuSerLeuValMetIleIleSerArgSerSerMetValIle : 369 ! ! !.!.!!||| !..!|||:!!:!!|||||| !|||.!!!:! ! ! ! sHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyr 807433 : CCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTAT : 807489 370 : LysIleThrAlaGlyLysIleIleArgIleSerLeuAlaThrPheGlyAspVal : 387 :::|||||||||||||||.!!:!!! !!!:!:!||| !|||||| !!!::!! ArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIle 807490 : CGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATA : 807545 vulgar: gi|805766364|ref|XP_012135240.1| 311 387 . KQ414940.1 807317 807545 + 123 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807318 807545 123 + . gene_id 1 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807318 807545 . + . KQ414940.1 exonerate:protein2genome:local exon 807318 807545 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807318 807545 123 + . alignment_id 1 ; Query gi|805766364|ref|XP_012135240.1| ; Align 807318 312 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795896|ref|XP_012143135.1| PREDICTED: uncharacterized protein LOC100875381 [Megachile rotundata] Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 176 -> 245 Target range: 32542 -> 32749 177 : LeuAspPheIleAlaProLeuAsnGluThrArgThrLysLeuProLeuPheLysLeuAsn : 196 :!!||| ! ||||||||||||||||||:!!||| ! ! :!!! !! !!:! !.!. IleAspValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGlu 32543 : ATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAA : 32600 197 : TyrIleValAspMetArgAspHisPheTyrIleValTyrLeuHisSerAlaTrpCysSer : 216 |||.!!||||||...::: :::||| !:!! ||||||! ! ! !! ! ! TyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrVal 32601 : TATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTT : 32660 217 : LeuIleIleValLeuIleValThrThrMetAspSerLeuTyrMetValIleIleHisTyr : 236 !:!! !:!! !:!!!.!|||.!!:::||||||::::::::: ...::: !:!! ThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHis 32661 : ACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCAC : 32720 237 : AlaCysGlyLeuPheAlaLeuCysGly : 245 !.!|||!.! !||| !:!! !||| ValCysAlaLysPheAsnIleLeuGly 32721 : GTTTGCGCCAAATTCAATATTCTCGGG : 32749 vulgar: gi|805795896|ref|XP_012143135.1| 176 245 . KQ415081.1 32542 32749 + 101 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32543 32749 101 + . gene_id 1 ; sequence gi|805795896|ref|XP_012143135.1| ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32543 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32543 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32543 32749 101 + . alignment_id 1 ; Query gi|805795896|ref|XP_012143135.1| ; Align 32543 177 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 167 -> 253 Target range: 32491 -> 32749 168 : LeuTrpIlePheValSerLeuPheLeuCysIleProLeuSerSerPheAlaLeuAspIle : 187 :!!!::||| :!!! !! !!:! ! :!:! !!!! ! !!!:! !:!!|||:!: ValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspVal 32492 : GTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTG : 32549 188 : IleValProLeuAsnGluSerArgProArgValSerLeuPheLysLeuAsnTyrIleMet : 207 |||!.!||||||||||||||||||! !!.!||| !! !!:! !.!.|||.!!:!: IleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPheVal 32550 : ATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTC : 32609 208 : AspMetGluAspHisPheTyrIleValTyrLeuHisSerAlaCysCysAlaLeuAsnVal : 227 |||...::: :::||| !:!! ||||||! ! ! ! !!.! ! !! ! AspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGly 32610 : GACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGT : 32669 228 : ValLeuIleValThrThrMetAspSerLeuTyrMetValIleIleHisTyrSerCysGly : 247 :!! !:!!!.!|||.!!:::||||||::::::::: ...::: !:!! !|||!.! LeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAla 32670 : CTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCC : 32729 248 : LeuPheAlaLeuCysGly : 253 !||| !:!! !||| LysPheAsnIleLeuGly 32730 : AAATTCAATATTCTCGGG : 32749 vulgar: gi|805795905|ref|XP_012143137.1| 167 253 . KQ415081.1 32491 32749 + 107 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32492 32749 107 + . gene_id 1 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32492 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32492 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32492 32749 107 + . alignment_id 1 ; Query gi|805795905|ref|XP_012143137.1| ; Align 32492 168 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795896|ref|XP_012143135.1| PREDICTED: uncharacterized protein LOC100875381 [Megachile rotundata] Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 163 -> 265 Target range: 220 -> 526 164 : LeuValLeuPheValSerIleProLeuSerSerProAlaLeuAspPheIleAlaProLeuAsnG : 185 :!!:!!||||||||||||! |||:!!!!! !!! ! !||||||.!!:!! !||| !|||| ValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProLysAsnG 221 : GTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAAAACG : 284 186 : luThrArgThrLysLeuProLeuPheLysLeuAsnTyrIleValAspMetArgAspHisPheTy : 206 ||:!!||| ! ! ! !:!!!:! ! ! !!|||.!!..!||| !!.! ! :!! ! luSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspVa 285 : AGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGT : 347 207 : rIleValTyrLeuHisSerAlaTrpCysSerLeuIleIleValLeuIleValThrThrMetAsp : 227 !:!! ! !|||! !|||! ! !|||:!::!: !!! !:!: ! !.!! ||| lTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrPheAlaCysAsp 348 : GTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGAC : 410 228 : SerLeuTyrMetValIleIleHisTyrAlaCysGlyLeuPheAlaLeuCysGlyTyrGlnValL : 249 !!! !|||!!: !:!!:!:!!.:!!!.!|||||||||!!.|||:!!! !||| ::::::: ThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly***LysIleA 411 : ACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaattc : 476 250 : ysLysAlaThrGluMetValGlyProLysAlaIleProThrIleAsnThr : 265 ::... ..! !:!!..!||| ::! ! !! !|||:!!||| rgSerAsnAspSer***LeuAsnProPheSerAlaAsnLysIleAspThr 477 : gatcgaacgattCGTAGCTCAACCCTTTCAGTGCCAACAAAATCGATACG : 526 vulgar: gi|805795896|ref|XP_012143135.1| 163 265 . LHQN01023902.1 220 526 + 129 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 221 526 129 + . gene_id 1 ; sequence gi|805795896|ref|XP_012143135.1| ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 221 526 . + . LHQN01023902.1 exonerate:protein2genome:local exon 221 526 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 221 526 129 + . alignment_id 1 ; Query gi|805795896|ref|XP_012143135.1| ; Align 221 164 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 274 Query range: 127 -> 320 Target range: 199 -> 1693 128 : IleAlaSerAlaTyrPheAlaMetMetLeuPheLeuGlnMetProTrpTrpProArgValAl : 148 |||!.!!:!||| ! !!..!:!:!!:||||||:!!..!! !||| ! |||!.!:!! IleValAsnAlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLe 200 : ATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTT : 260 149 : aAspIleLeuMetProLeuAsnAlaSerArgProArgGlyTyrIlePheProAlaTyrTyrT : 169 !|||||||||:!:||| !|||! !|||||| ! !!.!||||||!:!||||||||||||! uAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrP 261 : GGACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATT : 323 170 : yrValAspAspAspLysTyrTyrTyrTrpIleIleAlaTyrSerSerIleAlaThrIleIle : 189 :!..!|||!!: !!|||||| !! !::||||||.!!:!!! !:!! !!.!! !:!::!: heThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuVal 324 : TCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTG : 383 190 : ThrValCysGlyTyrIleAlaCysAspIleTyrPheIleTyrAlaValGlnHisAlaCysGl : 210 ..! !!! !! !|||.!!|||||||||! ! !!:!||||||!.!|||||||||!.!||||| ValPheTyrValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGl 384 : GTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGG : 446 211 : yLeuPheThrValAla{Gl} >>>> Target Intron 1 >>>> {y}TyrAlaLysA : 220 ||||!!..!!|||:!!{||} 921 bp {|}||| ! ! yLeuLeuAlaValSer{Gl}++ ++{y}TyrIleAspG 447 : ATTGTTGGCCGTGTCC{GG}gt.........................ag{A}TACATTGACC : 1397 221 : laIleAspAspPheTyrTyrGlyIleLeuPheIleValValGlyMetThrIleGlyAlaPhe : 240 !|||! ! .!!:!! ...|||||| ||||||:!:! !!!: !..!||| lnIleAlaLysIleHisAlaValTyrPhePheIleCysValGlyValIleMetIleCysPhe 1398 : AGATCGCAAAAATCCATGCggtctatttttttatttgcgtTGGTGTTATAATGATATGCTTC : 1457 241 : SerSerThrLeuPheTrpValSerSerLeuAsnPheIleLeuThrAspAspSerAsnLeuSe : 261 ||| !! !||| ! !|||||||||! !.!.!:: !||| ! !! !:!!! ! SerValIleLeuValLysValSerSerSerGluTrpGlnLeuTyrArgValAlaIleThrLe 1458 : AGCGTGATACTGGTGAAGGTGAGCTCTTCAGAGTGGCAATTATATCGCGTTGCGATAACGCT : 1520 262 : rAspAspSerSerLeuLeuTyrIlePheSerLysGlnLeuSerLysMetLysProCysAlaG : 282 ! ! !! !||| ! |||! !!!!||||||:!!|||!!. !:!! ! !|||: u------IleIleLeuLysThrIleSerTrpLysGlnValSerAsnSerGluIleAsnAlaG 1521 : G------ATCATCCTCAAAACAATTTCTTGGAAACAGGTGTCGAACTCGGAGATTAACGCGG : 1577 283 : lnPheTyrGluTyrIleValPheLeuThrIleGlnLeuLeuHisIlePhePheLeuAlaIle : 302 !!||| !:!! !! !..!|||:!!! !|||||||||:!!||||||.!!!:!|||.!!:!! luPheThrLysAspCysThrPheIleMetIleGlnLeuValHisIleLeuTyrLeuThrLeu 1578 : AGTTTACCAAGGATTGCACATTTATCATGATTCAATTGGTACACATACTTTATCTAACTCTT : 1637 303 : GlnGlyGlnPheMetIleAsnArgThrAspIleValTyrAsnGlnIleTyrGlu : 320 ||||||||||||:!!|||:!! !!.!!!: !:!!!:!.!...!!!:!! ||| GlnGlyGlnPheValIleAspAlaAsnGluGluIlePheGluSerMet***Glu 1638 : CAAGGACAATTCGTGATCGACGCGAACGAGGAAATCTTCGAATCGATGTAAGAA : 1693 vulgar: gi|805793799|ref|XP_012142565.1| 127 320 . LHQN01023902.1 199 1693 + 274 M 88 264 S 0 2 5 0 2 I 0 917 3 0 2 S 1 1 M 45 135 G 2 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 200 1693 274 + . gene_id 1 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation + LHQN01023902.1 exonerate:protein2genome:local cds 200 465 . + . LHQN01023902.1 exonerate:protein2genome:local exon 200 465 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local splice5 466 467 . + . intron_id 1 ; splice_site "gt" LHQN01023902.1 exonerate:protein2genome:local intron 466 1386 . + . intron_id 1 LHQN01023902.1 exonerate:protein2genome:local splice3 1385 1386 . + . intron_id 0 ; splice_site "AG" LHQN01023902.1 exonerate:protein2genome:local cds 1387 1693 . + . LHQN01023902.1 exonerate:protein2genome:local exon 1387 1693 . + . insertions 0 ; deletions 2 LHQN01023902.1 exonerate:protein2genome:local similarity 200 1693 274 + . alignment_id 1 ; Query gi|805793799|ref|XP_012142565.1| ; Align 200 128 264 ; Align 1388 217 135 ; Align 1523 264 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 407 Query range: 126 -> 376 Target range: 11465 -> 13059 127 : TyrIleAlaSerAlaTyrPheAlaMetMetLeuPheLeuGlnMetProTrpTrpProArg : 146 !:! !!.!!:!||||||.!!..! !.!.||||||:!!|||:!!|||||| ! !!||| PheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArg 11466 : TTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGA : 11523 147 : ValAlaAspIleLeuMetProLeuAsnAlaSerArgProArgGlyTyrIlePheProAla : 166 :!!!.!:!! ! !! ! !!! !||| !!!!! ! ! ! !!:!:!!.!.|||!.! LeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuGlnPheValIleProGly 11524 : TTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGA : 11583 167 : TyrTyrTyrValAspAspAspLysTyrTyrTyrTrpIleIleAlaTyrSerSerIleAla : 186 ||||||!:!||||||!!:! :!!|||||||||!::|||||| !:!!.!!!!! !.!! TyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThr 11584 : TATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACA : 11643 187 : ThrIleIleThrValCysGlyTyrIleAlaCysAspIleTyrPheIleTyrAlaValGln : 206 ..!:!:|||..!||| ! !||| !|||||||||! ! !!:!!!: !|||||| ValLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGln 11644 : GTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAA : 11703 207 : HisAlaCysGlyLeuPheThrValAlaGlyTyrAlaLys >>>> Target Intron : 220 |||.!!||||||||||||.!!|||||||||! ! !!!. 291 bp HisThrCysGlyLeuPheAlaValAlaGly***GluAsn-+ 11704 : CACACTTGCGGACTGTTCGCCGTGGCCGGGTGAGAAAACtt................... : 11747 221 : 1 >>>> AlaIleAspAspPheTyrTyrGlyIleLeuPheIleValValGlyMetThrI : 237 ! !|||!!: ! !:!! !! ! !||||||! ! !:!!!.!|||..!| ++GluIleGluArgGlyHisAspThrTyrLeuPheThrCysLeuAlaMetValI 11748 : ......agGAAATTGAACGCGGCCATGACACGTACCTTTTCACCTGCTTAGCCATGGTGA : 12087 238 : leGlyAlaPheSerSerThrLeuPheTrpValSerSerLeuAsnPheIleLeuThrAspA : 257 ||! !..!||||||! !||||||.!! !|||||| ||| ::: ||| leValCysPheSerIleThrLeuIleGlnValSerPheLeuPheSerLeuSerTyrAspT 12088 : TTGTATGCTTCAGTATTACTCTGATCCAGGTgagcttccttttttctctttcctacGATT : 12147 258 : spSerAsnLeuSerAspAspSerSerLeuLeuTyrIlePheSerLysGlnLeuSerLysM : 277 !!! !:::! !!!! ... ... :::||||||.!.|||||||||! ! yrIleSerArgCysLeuIleCysGlyAsnPheSerLeuPheSerAsnGlnLeuSerThrA 12148 : ACATTTCGCGTTGTTTAAtctgtggaaatttttcactgttttcaaATCAGCTGAGTACGG : 12207 278 : etLysProCysAlaGlnPheTyrGluTyrIleValPheLeuThrIleGlnLeuLeuHisI : 297 ! ! ! ! !.!.||||||..! !! ! !|||:!! ! !||||||:!!|||: laAspLeuAspIleAsnPheTyrArgAsnCysSerPheMetLeuCysGlnLeuMetHisL 12208 : CGGATTTAGATATAAACTTCTACAGAAACTGCAGTTTCATGTTGTGTCAACTGATGCATC : 12267 298 : lePhePheLeuAlaIleGlnGlyGlnPheMetIleAsnArgThrAspIleValTyrAsnG : 317 !!||| !!:!! !:!!||||||||||||:!!:!::!! ! !|||! !:!!:!! euPheValIleMetLeuGlnGlyGlnPheValLeuAspSerCysAspArgIleHisAlaA 12268 : TATTTGTCATCATGCTTCAGGGACAGTTCGTGCTGGATTCGTGCGACAGAATTCACGCGG : 12327 318 : ln{Il} >>>> Target Intron 2 >>>> {e}TyrGluGlyGlnTrpTyrAsnS : 326 !{||} 470 bp {|}||||||..! !||||||!..| la{Il}++ ++{e}TyrGluSerLeuTrpTyrThrS 12328 : CG{AT}gt.........................ag{A}TACGAATCATTATGGTACACAA : 12824 327 : erValProLysThrGlnGluLeuPheIleLeuAlaLeuArgThrAlaMetAsnProProG : 346 || ! !!|||||||||! !|||!:!:!::!!|||||||||! ! !:!:!..||| !! erSerSerLysThrGlnAlaLeuTyrValValAlaLeuArgArgAsnLeuThrProThrC 12825 : GTTCTTCGAAAACACAAGCATTATACGTGGTAGCGTTACGAAGAAACCTAACACCTACCT : 12884 347 : lnIleThrAlaGlyGlyValIleAlaMetAsnLeuGlnThrPheAlaGlu >>>> Tar : 363 :!!||||||||||||:!!:!: !:!!|||:!! !!:!||| !||| ysLeuThrAlaGlyGlyLeuValGlnLeuAsnMetAlaSerPheLeuGlu++ 12885 : GTTTAACGGCTGGCGGTTTAGTGCAACTGAACATGGCAAGTTTCTTGGAGgt........ : 12937 364 : get Intron 3 >>>> ValValLysValSerPheSerTyrTyrThrValLeuGlnTh : 376 83 bp |||||||||:!!||| ! ||||||||||||||||||:!!|| ++ValValLysMetSerValSerTyrTyrThrValLeuLysTh 12938 : .................agGTGGTAAAAATGTCCGTATCCTATTATACGGTGTTGAAGAC : 13057 377 : r : 376 | r 13058 : A : 13059 vulgar: gi|805793799|ref|XP_012142565.1| 126 376 . LHQN01025741.1 11465 13059 + 407 M 93 279 5 0 2 I 0 287 3 0 2 M 98 294 S 0 2 5 0 2 I 0 466 3 0 2 S 1 1 M 44 132 5 0 2 I 0 79 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11466 13059 407 + . gene_id 1 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 11466 11744 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11466 11744 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 11745 11746 . + . intron_id 1 ; splice_site "TT" LHQN01025741.1 exonerate:protein2genome:local intron 11745 12035 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 12034 12035 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 12036 12331 . + . LHQN01025741.1 exonerate:protein2genome:local exon 12036 12331 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 12332 12333 . + . intron_id 2 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 12332 12801 . + . intron_id 2 LHQN01025741.1 exonerate:protein2genome:local splice3 12800 12801 . + . intron_id 1 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 12802 12934 . + . LHQN01025741.1 exonerate:protein2genome:local exon 12802 12934 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 12935 12936 . + . intron_id 3 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 12935 13017 . + . intron_id 3 LHQN01025741.1 exonerate:protein2genome:local splice3 13016 13017 . + . intron_id 2 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 13018 13059 . + . LHQN01025741.1 exonerate:protein2genome:local exon 13018 13059 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11466 13059 407 + . alignment_id 1 ; Query gi|805793799|ref|XP_012142565.1| ; Align 11466 127 279 ; Align 12036 220 294 ; Align 12803 319 132 ; Align 13018 363 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 280 Query range: 287 -> 376 Target range: 9075 -> 9540 288 : ValPheLeuThrIleGlnLeuLeuHisIlePhePheLeuAlaIleGlnGlyGlnPheMetIl : 308 ..!|||!!!..! !||| !!!!|||:!!||||||||| !:!!||||||||||||:!!|| ThrPhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGlnGlyGlnPheValIl 9076 : ACGTTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGGACAATTTGTGAT : 9136 309 : eAsnArgThrAspIleValTyrAsnGln{Il} >>>> Target Intron 1 >>>> { : 318 |||| ! !||| !:!!|||:!!:!!{||} 113 bp { eAsnAlaPheAspGluLeuTyrAspLys{Il}++ ++{ 9137 : AAACGCGTTCGACGAACTGTACGACAAG{AT}gt.........................ag{ : 9281 319 : e}TyrGluGlyGlnTrpTyrAsnSerValProLysThrGlnGluLeuPheIleLeuAlaLeu : 338 |}||||||..!||||||||||||! !..!|||!:!||||||! !|||!:!:!!||||||||| e}TyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeu 9282 : A}TACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTG : 9339 339 : ArgThrAlaMetAsnProProGlnIleThrAlaGlyGlyValIleAlaMetAsnLeuGlnTh : 359 |||!:!..!:!:|||||||||! !:!!||||||||||||:!!! .!!:!!||||||!:!:! ArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSe 9340 : AGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATC : 9402 360 : rPheAlaGlu >>>> Target Intron 2 >>>> ValValLysValSerPheSerTy : 370 !||||||||| 85 bp :!!:!!|||!.!||| !!||||| rPheAlaGlu++ ++IleIleLysAlaSerValSerTy 9403 : GTTCGCAGAGgt.........................agATCATCAAAGCATCTGTTTCCTA : 9520 371 : rTyrThrValLeuGlnThr : 376 ||||||||||:!!|||||| rTyrThrValMetGlnThr 9521 : CTACACGGTGATGCAGACC : 9540 vulgar: gi|805793799|ref|XP_012142565.1| 287 376 . LHQN01025741.1 9075 9540 + 280 M 30 90 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 44 132 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 9076 9540 280 + . gene_id 2 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 9076 9167 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9076 9167 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 9168 9169 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 9168 9280 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 9279 9280 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 9281 9413 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9281 9413 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 9414 9415 . + . intron_id 2 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 9414 9498 . + . intron_id 2 LHQN01025741.1 exonerate:protein2genome:local splice3 9497 9498 . + . intron_id 1 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 9499 9540 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9499 9540 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 9076 9540 280 + . alignment_id 2 ; Query gi|805793799|ref|XP_012142565.1| ; Align 9076 288 90 ; Align 9282 319 132 ; Align 9499 363 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 279 Query range: 274 -> 363 Target range: 2292 -> 2692 275 : SerLysMetLysProCysAlaGlnPheTyrGluTyrIleValPheLeuThrIleGlnLeuLe : 295 |||! !||| ! |||||| !:!!||||||:!!||| !! !||||||..!:!:||||||:! SerMetMetAspProCysMetGluPheTyrLysTyrCysGlyPheLeuValValGlnLeuVa 2293 : TCCATGATGGACCCTTGCATGGAGTTCTACAAGTATTGCGGTTTCTTGGTGGTGCAACTGGT : 2353 296 : uHisIlePhePheLeuAlaIleGlnGlyGlnPheMetIleAsnArgThrAspIleValTyrA : 316 !|||:!:.!!||||||:!!|||||||||!!.|||!!:||| ! ! !|||!!:..!|||: lHisLeuLeuPheLeuSerIleGlnGlyHisPheIleIleLeuSerHisAspMetThrTyrA 2354 : TCATTTGCTTTTCCTTTCTATCCAGGGACACTTTATTATACTCTCGCATGACATGACTTACG : 2416 317 : snGln{Il} >>>> Target Intron 1 >>>> {e}TyrGluGlyGlnTrpTyrAsn : 325 !!.!.{||} 133 bp {|}|||...!.!:!!||||||||| spAsn{Il}++ ++{e}TyrSerAlaLysTrpTyrAsn 2417 : ACAAC{AT}gt.........................ag{A}TATAGCGCAAAATGGTACAAC : 2576 326 : SerValProLysThrGlnGluLeuPheIleLeuAlaLeuArgThrAlaMetAsnProProGl : 346 ||| !|||!:!|||||| |||!:!:!:||||||||||||! !::!:!!!.!|||||| SerSerProArgThrGlnThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLe 2577 : AGTTCGCCGAGAACGCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATT : 2639 347 : nIleThrAlaGlyGlyValIleAlaMetAsnLeuGlnThrPheAlaGluVal : 363 !:!!||||||||||||:!!|||:!!:!!||||||:!!||||||||||||||| uLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGluVal 2640 : GCTCACTGCGGGAGGACTGATTTCCTTGAATTTGGAGACTTTTGCCGAGGTA : 2692 vulgar: gi|805793799|ref|XP_012142565.1| 274 363 . LHQN01025741.1 2292 2692 + 279 M 43 129 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 2293 2692 279 + . gene_id 3 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 2293 2423 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2293 2423 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 2424 2425 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 2424 2556 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 2555 2556 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 2557 2692 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2557 2692 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 2293 2692 279 + . alignment_id 3 ; Query gi|805793799|ref|XP_012142565.1| ; Align 2293 275 129 ; Align 2558 319 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 232 Query range: 120 -> 216 Target range: 4954 -> 5242 121 : AlaPheTyrSerSerIleTyrIleAlaSerAlaTyrPheAlaMetMetLeuPheLeuGlnMe : 141 :!!||||||! !!!!.!! ! ! !!.! ! !! !!...! ||||||:!! :! SerPheTyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLe 4955 : TCATTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTT : 5015 142 : tProTrpTrpProArgValAlaAspIleLeuMetProLeuAsnAlaSerArgProArgGlyT : 162 !|||!:: ! !!! !:!! !|||||||||||||||||||||! !!!!||| !!||| !! uProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuP 5016 : GCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGT : 5078 163 : yrIlePheProAlaTyrTyrTyrValAspAspAspLysTyrTyrTyrTrpIleIleAlaTyr : 182 :!:!!!:!||||||||||||!:!||||||!!:|||||||||:!!|||! !|||:!!!.!:!! heValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHis 5079 : TCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCAT : 5138 183 : SerSerIleAlaThrIleIleThrValCysGlyTyrIleAlaCysAspIleTyrPheIleTy : 203 ! !! !:!!!.!..!:!!!!: !:!!! !! !!:! !||||||||| ! !!!:!:!:|| MetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTy 5139 : ATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTA : 5201 204 : rAlaValGlnHisAlaCysGlyLeuPheThrValAlaGly : 216 |||||||||||||||||||||||||!!..!!:!!|||||| rAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5202 : CGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5242 vulgar: gi|805793799|ref|XP_012142565.1| 120 216 . LHQN01025741.1 4954 5242 + 232 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4955 5242 232 + . gene_id 4 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4955 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4955 5242 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4955 5242 232 + . alignment_id 4 ; Query gi|805793799|ref|XP_012142565.1| ; Align 4955 121 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 123 -> 216 Target range: 1552 -> 1831 124 : SerSerIleTyrIleAlaSerAlaTyrPheAlaMetMetLeuPheLeuGlnMetProTrpTr : 144 ||| ! !!:!! !!.!!:!!.! |||..! :!::!!||| !..!:!! !! SerLeuTyrPheThrValAsnGlyLeuPheCysTyrValIlePheThrSerValAlaIleTh 1553 : TCTCTGTATTTCACAGTAAACGGACTGTTTTGCTACGTTATATTCACCTCAGTGGCGATTAC : 1613 145 : pProArgValAlaAspIleLeuMetProLeuAsnAlaSerArgProArgGlyTyrIlePheP : 165 !||||||||| !|||:!!:!! ||| !|||! !|||||| ! !! !!:!|||!:!| rProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValAspPheIleTyrP 1614 : GCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTCATTTATC : 1676 166 : roAlaTyrTyrTyrValAspAspAspLysTyrTyrTyrTrpIleIleAlaTyrSerSerIle : 185 ||||||||||| !:!!|||!!:!!::!!:!!|||||| :!:!!:!.!:!!! ! ! ! roAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHisMetLeuCys 1677 : CTGCATACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCACATGCTCTGC : 1736 186 : AlaThrIleIleThrValCysGlyTyrIleAlaCysAspIleTyrPheIleTyrAlaValGl : 206 !.!! !! !:!!..! !!! !! !||||||:!!||||||! !!:!!!: !! !||||| ValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMetAsnIleValGl 1737 : GTGATAACTGTAGTGTTTTTCGTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCA : 1799 207 : nHisAlaCysGlyLeuPheThrValAlaGly : 216 ||||||||||||||||.!.!.!|||:!!||| nHisAlaCysGlyLeuLeuAsnValSerGly 1800 : ACACGCGTGCGGATTACTGAACGTCTCTGGG : 1831 vulgar: gi|805793799|ref|XP_012142565.1| 123 216 . LHQN01025741.1 1552 1831 + 178 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1553 1831 178 + . gene_id 5 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1553 1831 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1553 1831 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1553 1831 178 + . alignment_id 5 ; Query gi|805793799|ref|XP_012142565.1| ; Align 1553 124 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 318 -> 376 Target range: 6187 -> 6438 319 : TyrGluGlyGlnTrpTyrAsnSerValProLysThrGlnGluLeuPheIleLeuAlaLeuAr : 339 ||||||..! !|||||||||||| ! !|||||||||! !|||!:!|||||||||||||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeuAr 6188 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTACG : 6248 340 : gThrAlaMetAsnProProGlnIleThrAlaGlyGlyValIleAlaMetAsnLeuGlnThrP : 360 |!:!::!:!:||||||||| !:!!|||||||||||| !!|||.!!:!!||||||:!!|||| gSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLysThrP 6249 : GAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAGACCT : 6311 361 : heAlaGluVal{Va} >>>> Target Intron 1 >>>> {l}LysValSerPheSer : 369 ||:!!||||||{..} 77 bp {!}||| !||| ! ||| heSerGluVal{Th}++ +-{r}LysSerSerValSer 6312 : TCTCAGAGGTA{AC}gt.........................at{A}AAATCATCCGTGTCT : 6415 370 : TyrTyrThrValLeuGlnThr : 376 ||||||||||||:!!|||:!! TyrTyrThrValMetGlnSer 6416 : TACTATACGGTGATGCAATCG : 6438 vulgar: gi|805793799|ref|XP_012142565.1| 318 376 . LHQN01025741.1 6187 6438 + 165 M 45 135 S 0 2 5 0 2 I 0 73 3 0 2 S 1 1 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 6188 6438 165 + . gene_id 6 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 6188 6324 . + . LHQN01025741.1 exonerate:protein2genome:local exon 6188 6324 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 6325 6326 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 6325 6401 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 6400 6401 . + . intron_id 0 ; splice_site "AT" LHQN01025741.1 exonerate:protein2genome:local cds 6402 6438 . + . LHQN01025741.1 exonerate:protein2genome:local exon 6402 6438 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 6188 6438 165 + . alignment_id 6 ; Query gi|805793799|ref|XP_012142565.1| ; Align 6188 319 135 ; Align 6403 365 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 126 -> 188 Target range: 8883 -> 9069 127 : TyrIleAlaSerAlaTyrPheAlaMetMetLeuPheLeuGlnMetProTrpTrpProArgVa : 147 !:!! !||| ! !!:!.!! !! ! :!!|||||| :!!|||!:: |||! !:! PheThrAlaHisLeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIl 8884 : TTTACAGCACATTTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCAT : 8944 148 : lAlaAspIleLeuMetProLeuAsnAlaSerArgProArgGlyTyrIlePheProAlaTyrT : 168 ! !||||||! ! !||||||||| !!!!||| !|||!.!!:!:!!!:!|||||||||| eLeuAspIleCysAlaProLeuAsnLysThrArgLysArgAlaPheValTyrProAlaTyrT 8945 : CTTGGACATTTGCGCGCCACTGAACAAAACGAGAAAACGTGCGTTCGTTTATCCAGCCTATT : 9007 169 : yrTyrValAspAspAspLysTyrTyrTyrTrpIleIleAlaTyrSerSerIleAlaThrIle : 188 ||!:::!!||| !!!::!!|||||| !!:||| !:!!! !!.!:!: !..!:!: yrTrpMetAspProGluGlnTyrTyrMetIleMetIleIleHisIleLysLeuLysValVal 9008 : ACTGGATGGATCCTGAGCAATACTACATGATAATGATAATACACATAAAGTTGAAGGTTGTG : 9067 vulgar: gi|805793799|ref|XP_012142565.1| 126 188 . LHQN01025741.1 8883 9069 + 122 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 8884 9069 122 + . gene_id 7 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 8884 9069 . + . LHQN01025741.1 exonerate:protein2genome:local exon 8884 9069 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 8884 9069 122 + . alignment_id 7 ; Query gi|805793799|ref|XP_012142565.1| ; Align 8884 127 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 169 -> 257 Target range: 4990 -> 5254 170 : IlePheValSerLeuPheLeuCysIleProLeuSerSerPheAlaLeuAspIleIleValPr : 190 :!!! !!.!:!!||||||:!!|||:!:|||!!! !||| !|||||||||:!!:!!|| LeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetPr 4991 : TTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCC : 5051 191 : oLeuAsnGluSerArgProArgValSerLeuPheLysLeuAsnTyrIleMetAspMetGluA : 211 ||||||||||!!!||| !!|||:!!! !:!!!:! ! ! !!|||.!!:!:||| !!!: oLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspL 5052 : GTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACA : 5114 212 : spHisPheTyrIleValTyrLeuHisSerAlaCysCysAlaLeuAsnValValLeuIleVal : 231 ! :!! !|||:!::!! !|||! ! ! ! !.!:!!! :!!:!!! !:!! !! ysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPhe 5115 : AATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTC : 5174 232 : ThrThrMetAspSerLeuTyrMetValIleIleHisTyrSerCysGlyLeuPheAlaLeuCy : 252 !.!! |||:!! !|||:!! ! !:!:!!.:!!:!!|||||||||!!.|||:!!.. CysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAl 5175 : TGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGC : 5237 253 : sGlyTyrGlnIleGln : 257 .|||!! !:!!||| aGly***LeuValGln 5238 : AGGGTAATTAGTTCAA : 5254 vulgar: gi|805795905|ref|XP_012143137.1| 169 257 . LHQN01025741.1 4990 5254 + 150 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4991 5254 150 + . gene_id 1 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4991 5254 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4991 5254 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4991 5254 150 + . alignment_id 1 ; Query gi|805795905|ref|XP_012143137.1| ; Align 4991 170 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 204 -> 253 Target range: 11588 -> 11735 205 : TyrIleMetAspMetGluAspHisPheTyrIleValTyrLeuHisSerAlaCysCysAla : 224 |||.!!:!:||| ! !!!::!!!:!||| !:!! ||||||.!!.!!||| !.! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrVal 11589 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTT : 11646 225 : LeuAsnValValLeuIleValThrThrMetAspSerLeuTyrMetValIleIleHisTyr : 244 |||! !||||||:!!:!: ! !.!! |||!!! !|||||||||:!::!:!!.:!! LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 11647 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 11706 245 : SerCysGlyLeuPheAlaLeuCysGly : 253 !!!|||||||||||||||:!!..!||| ThrCysGlyLeuPheAlaValAlaGly 11707 : ACTTGCGGACTGTTCGCCGTGGCCGGG : 11735 vulgar: gi|805795905|ref|XP_012143137.1| 204 253 . LHQN01025741.1 11588 11735 + 120 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11589 11735 120 + . gene_id 2 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11589 11735 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11589 11735 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11589 11735 120 + . alignment_id 2 ; Query gi|805795905|ref|XP_012143137.1| ; Align 11589 205 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 163 -> 219 Target range: 8883 -> 9051 164 : TyrArgSerSerLeuTrpIlePheValSerLeuPheLeuCysIleProLeuSerSerPheAl : 184 !:!! !:!! !|||!:::!! !!.!:!!:!!|||||||||:!:|||!!!:!! !!.!! PheThrAlaHisLeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIl 8884 : TTTACAGCACATTTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCAT : 8944 185 : aLeuAspIleIleValProLeuAsnGluSerArgProArgValSerLeuPheLysLeuAsnT : 205 !||||||||| !!.!|||||||||:!!!!!||| !|||!.!! !:!!!:! ! ! !!| eLeuAspIleCysAlaProLeuAsnLysThrArgLysArgAlaPheValTyrProAlaTyrT 8945 : CTTGGACATTTGCGCGCCACTGAACAAAACGAGAAAACGTGCGTTCGTTTATCCAGCCTATT : 9007 206 : yrIleMetAspMetGluAspHisPheTyrIleValTyrLeuHis : 219 || |||||| |||.!.:!!!:! |||:!! :!!||| yrTrpMetAspProGluGlnTyrTyrMetIleMetIleIleHis 9008 : ACTGGATGGATCCTGAGCAATACTACATGATAATGATAATACAC : 9051 vulgar: gi|805795905|ref|XP_012143137.1| 163 219 . LHQN01025741.1 8883 9051 + 111 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 8884 9051 111 + . gene_id 3 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 8884 9051 . + . LHQN01025741.1 exonerate:protein2genome:local exon 8884 9051 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 8884 9051 111 + . alignment_id 3 ; Query gi|805795905|ref|XP_012143137.1| ; Align 8884 164 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 363 -> 424 Target range: 9266 -> 9534 364 : LeuIleAspAlaIleTyrSerSerLysTrpTyrGlnThrProIleLysPheGlnArgValLe : 384 |||:!! !..!! !|||..!|||:!!||||||.!. ! !! !!:! ||| !:!!! LeuValLeuCysArgTyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTy 9267 : CTTGTCCTTTGCAGATACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTA : 9327 385 : uGluIleMetGlnIleArgCysSerArgProCysLysLeuThrAlaGlyGlyLeuTyrGluM : 405 !! !:!: !! !!!!||| !!.!||| ! !|||||||||||||||:!! !: rValLeuAlaLeuArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrL 9328 : TGTATTGGCATTGAGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGT : 9390 406 : etAsnIleGluAsnPheGlySer >>>> Target Intron 1 >>>> MetIleLysT : 416 !!|||:!!..!:::|||!.!..! 85 bp !!:||||||. euAsnLeuArgSerPheAlaGlu++ ++IleIleLysA 9391 : TGAATCTACGATCGTTCGCAGAGgt.........................agATCATCAAAG : 9508 417 : hrCysValSerTyrPheThrValLeu : 424 !!! !|||||||||!:!||||||:!! laSerValSerTyrTyrThrValMet 9509 : CATCTGTTTCCTACTACACGGTGATG : 9534 vulgar: gi|805795905|ref|XP_012143137.1| 363 424 . LHQN01025741.1 9266 9534 + 102 M 49 147 5 0 2 I 0 81 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 9267 9534 102 + . gene_id 4 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 9267 9413 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9267 9413 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 9414 9415 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 9414 9498 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 9497 9498 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 9499 9534 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9499 9534 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 9267 9534 102 + . alignment_id 4 ; Query gi|805795905|ref|XP_012143137.1| ; Align 9267 364 147 ; Align 9499 413 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795896|ref|XP_012143135.1| PREDICTED: uncharacterized protein LOC100875381 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 164 -> 245 Target range: 4999 -> 5242 165 : ValLeuPheValSerIleProLeuSerSerProAlaLeuAspPheIleAlaProLeuAsnGl : 185 !.!||||||:!!!!!:!:|||!!! !|||||| !||||||.!!:!! !||||||||||| AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGl 5000 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGA : 5060 186 : uThrArgThrLysLeuProLeuPheLysLeuAsnTyrIleValAspMetArgAspHisPheT : 206 |||||||.!!::!||| !:!!!:! ! ! !!|||.!!|||||| ! ! ! :!! !| uThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisT 5061 : GACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATT : 5123 207 : yrIleValTyrLeuHisSerAlaTrpCysSerLeuIleIleValLeuIleValThrThrMet : 226 ||:!::!! !|||! ! ! !:!!!!::!!:!!! !:!! !! !.!! yrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCys 5124 : ACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGC : 5183 227 : AspSerLeuTyrMetValIleIleHisTyrAlaCysGlyLeuPheAlaLeuCysGly : 245 |||:!! !|||:!! ! !:!:!!.:!!||||||||||||!!.|||:!!...||| AspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5184 : GATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5242 vulgar: gi|805795896|ref|XP_012143135.1| 164 245 . LHQN01025741.1 4999 5242 + 147 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5000 5242 147 + . gene_id 1 ; sequence gi|805795896|ref|XP_012143135.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5000 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5000 5242 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5000 5242 147 + . alignment_id 1 ; Query gi|805795896|ref|XP_012143135.1| ; Align 5000 165 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795896|ref|XP_012143135.1| PREDICTED: uncharacterized protein LOC100875381 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 165 -> 245 Target range: 11495 -> 11735 166 : LeuPheValSerIleProLeuSerSerProAlaLeuAspPheIleAlaProLeuAsnGlu : 185 ||||||:!!..!:!:|||! !!!!!!!! ! !:!!:!!! ! ! !!! !||| ! LeuPheIleGlnValProTrpThrThrArgLeuValAsnSerTyrLysThrGlnAsnIle 11496 : TTGTTCATACAAGTGCCATGGACGACCCGATTGGTGAACTCGTACAAGACACAGAATATA : 11553 186 : ThrArgThrLysLeuProLeuPheLysLeuAsnTyrIleValAspMetArgAspHisPhe : 205 |||! !!:! !! ! !:!!.!. ! !!|||.!!|||||| !!!::!!!:! ThrProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyr 11554 : ACGCCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTAT : 11613 206 : TyrIleValTyrLeuHisSerAlaTrpCysSerLeuIleIleValLeuIleValThrThr : 225 ||| !:!! ||||||.!!.!!!! !||||||:!!|||:!!:!: ! !.!! TyrTyrIleIleLeuHisGlyThrCysThrValLeuIleValValValValTyrCysAla 11614 : TATTACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTGCC : 11673 226 : MetAspSerLeuTyrMetValIleIleHisTyrAlaCysGlyLeuPheAlaLeuCysGly : 245 |||!!! !|||||||||:!::!:!!.:!!.!!|||||||||||||||:!!..!||| CysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly 11674 : TGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 11733 vulgar: gi|805795896|ref|XP_012143135.1| 165 245 . LHQN01025741.1 11495 11735 + 122 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11496 11735 122 + . gene_id 2 ; sequence gi|805795896|ref|XP_012143135.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11496 11735 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11496 11735 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11496 11735 122 + . alignment_id 2 ; Query gi|805795896|ref|XP_012143135.1| ; Align 11496 166 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 295 Query range: 126 -> 315 Target range: 1257 -> 375 127 : TyrIleAlaSerAlaTyrPheAlaMetMetLeuPheLeuGlnMetProTrpTrpProArgVa : 147 !:! !!.!!:!||||||.!!..! !.!.||||||:!!|||:!!|||||| ! !!|||:! PheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArgMe 1257 : TTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGAAT : 1197 148 : lAlaAspIleLeuMetProLeuAsnAlaSerArgProArgGlyTyrIlePheProAlaTyrT : 168 !!.!:!! ! !! ! !!! !||| !!!!! ! ! ! ! !:!! ! |||!.!|||| tValAsnSerTyrLysThrGlnAsnIleThrProSerLeuProValValValProGlyTyrT 1196 : GGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGATATT : 1134 169 : yrTyrValAspAspAspLysTyrTyrTyrTrpIleIleAlaTyrSerSerIleAlaThrIle : 188 ||!:!||||||!!:! :!!|||||||||!::|||||| !:!!.!!!!! !.!!..!:!: yrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeu 1133 : ACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTG : 1074 189 : IleThrValCysGlyTyrIleAlaCysAspIleTyrPheIleTyrAlaValGlnHisAlaCy : 209 |||..!||| ! !||| !|||||||||! ! !!:!!!: !|||||||||.!!|| IleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCy 1073 : ATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTG : 1011 210 : sGlyLeuPheThrValAla{Gl} >>>> Target Intron 1 >>>> {y}TyrAlaL : 219 ||||||||||.!!||||||{||} 315 bp {|}!:!!.!| sGlyLeuPheAlaValAla{Gl}++ ++{y}PheValL 1010 : CGGACTGTTCGCCGTGGCC{GG}gt.........................ag{C}TTTGTAA : 666 220 : ysAlaIleAspAspPheTyrTyrGlyIleLeuPheIleValValGlyMetThrIleGlyAla : 239 ||! !|||!!: ! !:!! !! ! !||||||! ! !:!!!.!:!!..!||| !..! ysGluIleGluArgGlyHisAspThrTyrLeuPheThrCysLeuAlaLeuValIleLeuCys 665 : AGGAAATTGAACGCGGCCATGACACGTACCTTTTCACCTGCTTAGCCTTGGTGATTCTATGC : 606 240 : PheSerSerThrLeuPheTrpValSerSerLeuAsnPheIleLeuThrAspAspSerAsnLe : 260 ||||||! !||||||.!! !|||||| ||| ::: !||| !!! !:::! PheSerIleThrLeuIleLysValSerPheLeuPheProLeuSerTyrAspTyrIleSerAr 605 : TTCAGTATTACTCTGATCAAGGTGagcttcctttttcctctttcctaCGACTACATTTCGCG : 543 261 : uSerAspAspSerSerLeuLeuTyrIlePheSerLysGlnLeuSerLysMetLysProCysA : 281 !!!! ... ... :::||||||.!.|||||||||! ! ! ! ! ! gCysLeuIleCysGlyAsnPheSerLeuPheSerAsnGlnLeuSerThrSerAspPheAspI 542 : TTGTTTAAtctgtggaaatttttcactgttttcaaATCAGCTGAGTACGTCGGATTTCGACA : 480 282 : laGlnPheTyrGluTyrIleValPheLeuThrIleGlnLeuLeuHisIlePhePheLeuAla : 301 !.!.||||||..!||| ! !||| ! ! !||||||:!!|||:!:||| !!:!! ! leAspPheTyrArgTyrCysSerPheThrLeuCysGlnLeuMetHisLeuPheValIleMet 479 : TAGACTTCTACAGATATTGCAGTTTTACGTTGTGTCAACTGATGCACCTGTTCGTTATCATG : 420 302 : IleGlnGlyGlnPheMetIleAsnArgThrAspIleValTyr : 315 :!!||||||||||||:!!:!::!! ! !!!:! !:!!:!! LeuGlnGlyGlnPheValLeuAspSerCysGluArgIleHis 419 : CTTCAGGGACAGTTCGTGCTGGATTCGTGCGAGAGAATTCAC : 376 vulgar: gi|805793799|ref|XP_012142565.1| 126 315 . LHQN01027734.1 1257 375 - 295 M 89 267 S 0 2 5 0 2 I 0 311 3 0 2 S 1 1 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 376 1257 295 - . gene_id 1 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation + LHQN01027734.1 exonerate:protein2genome:local cds 989 1257 . - . LHQN01027734.1 exonerate:protein2genome:local exon 989 1257 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 987 988 . - . intron_id 1 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 674 988 . - . intron_id 1 LHQN01027734.1 exonerate:protein2genome:local splice3 674 675 . - . intron_id 0 ; splice_site "AG" LHQN01027734.1 exonerate:protein2genome:local cds 376 673 . - . LHQN01027734.1 exonerate:protein2genome:local exon 376 673 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 376 1257 295 - . alignment_id 1 ; Query gi|805793799|ref|XP_012142565.1| ; Align 1258 127 267 ; Align 673 217 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 280 Query range: 287 -> 376 Target range: 3020 -> 2555 288 : ValPheLeuThrIleGlnLeuLeuHisIlePhePheLeuAlaIleGlnGlyGlnPheMetIl : 308 ..!|||!!!..! !||| !!!!|||:!!||||||||| !:!!||||||||||||:!!|| ThrPhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGlnGlyGlnPheValIl 3020 : ACGTTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGGACAATTTGTGAT : 2960 309 : eAsnArgThrAspIleValTyrAsnGln{Il} >>>> Target Intron 1 >>>> { : 318 |||| ! !||| !:!!|||:!!:!!{||} 113 bp { eAsnAlaPheAspGluLeuTyrAspLys{Il}++ ++{ 2959 : AAACGCGTTCGACGAACTGTACGACAAG{AT}gt.........................ag{ : 2815 319 : e}TyrGluGlyGlnTrpTyrAsnSerValProLysThrGlnGluLeuPheIleLeuAlaLeu : 338 |}||||||..!||||||||||||! !..!|||!:!||||||! !|||!:!:!!||||||||| e}TyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeu 2814 : A}TACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTG : 2757 339 : ArgThrAlaMetAsnProProGlnIleThrAlaGlyGlyValIleAlaMetAsnLeuGlnTh : 359 |||!:!..!:!:|||||||||! !:!!||||||||||||:!!! .!!:!!||||||!:!:! ArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSe 2756 : AGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATC : 2694 360 : rPheAlaGlu >>>> Target Intron 2 >>>> ValValLysValSerPheSerTy : 370 !||||||||| 85 bp :!!:!!|||!.!||| !!||||| rPheAlaGlu++ ++IleIleLysAlaSerValSerTy 2693 : GTTCGCAGAGgt.........................agATCATCAAAGCATCTGTTTCCTA : 2576 371 : rTyrThrValLeuGlnThr : 376 ||||||||||:!!|||||| rTyrThrValMetGlnThr 2575 : CTACACGGTGATGCAGACC : 2556 vulgar: gi|805793799|ref|XP_012142565.1| 287 376 . LHQN01027734.1 3020 2555 - 280 M 30 90 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 44 132 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 2556 3020 280 - . gene_id 2 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation + LHQN01027734.1 exonerate:protein2genome:local cds 2929 3020 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2929 3020 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 2927 2928 . - . intron_id 1 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 2816 2928 . - . intron_id 1 LHQN01027734.1 exonerate:protein2genome:local splice3 2816 2817 . - . intron_id 0 ; splice_site "AG" LHQN01027734.1 exonerate:protein2genome:local cds 2683 2815 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2683 2815 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 2681 2682 . - . intron_id 2 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 2598 2682 . - . intron_id 2 LHQN01027734.1 exonerate:protein2genome:local splice3 2598 2599 . - . intron_id 1 ; splice_site "AG" LHQN01027734.1 exonerate:protein2genome:local cds 2556 2597 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2556 2597 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 2556 3020 280 - . alignment_id 2 ; Query gi|805793799|ref|XP_012142565.1| ; Align 3021 288 90 ; Align 2815 319 132 ; Align 2598 363 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 204 -> 253 Target range: 1134 -> 987 205 : TyrIleMetAspMetGluAspHisPheTyrIleValTyrLeuHisSerAlaCysCysAlaLe : 225 |||.!!:!:||| ! !!!::!!!:!||| !:!! ||||||.!!.!!||| !.!|| TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLe 1134 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTT : 1074 226 : uAsnValValLeuIleValThrThrMetAspSerLeuTyrMetValIleIleHisTyrSerC : 246 |! !||||||:!!:!: ! !.!! |||!!! !|||||||||:!::!:!!.:!!!!!| uIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrC 1073 : GATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTT : 1011 247 : ysGlyLeuPheAlaLeuCysGly : 253 ||||||||||||||:!!..!||| ysGlyLeuPheAlaValAlaGly 1010 : GCGGACTGTTCGCCGTGGCCGGG : 988 vulgar: gi|805795905|ref|XP_012143137.1| 204 253 . LHQN01027734.1 1134 987 - 120 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 988 1134 120 - . gene_id 1 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 988 1134 . - . LHQN01027734.1 exonerate:protein2genome:local exon 988 1134 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 988 1134 120 - . alignment_id 1 ; Query gi|805795905|ref|XP_012143137.1| ; Align 1135 205 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 363 -> 424 Target range: 2829 -> 2561 364 : LeuIleAspAlaIleTyrSerSerLysTrpTyrGlnThrProIleLysPheGlnArgValLe : 384 |||:!! !..!! !|||..!|||:!!||||||.!. ! !! !!:! ||| !:!!! LeuValLeuCysArgTyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTy 2829 : CTTGTCCTTTGCAGATACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTA : 2769 385 : uGluIleMetGlnIleArgCysSerArgProCysLysLeuThrAlaGlyGlyLeuTyrGluM : 405 !! !:!: !! !!!!||| !!.!||| ! !|||||||||||||||:!! !: rValLeuAlaLeuArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrL 2768 : TGTATTGGCATTGAGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGT : 2706 406 : etAsnIleGluAsnPheGlySer >>>> Target Intron 1 >>>> MetIleLysT : 416 !!|||:!!..!:::|||!.!..! 85 bp !!:||||||. euAsnLeuArgSerPheAlaGlu++ ++IleIleLysA 2705 : TGAATCTACGATCGTTCGCAGAGgt.........................agATCATCAAAG : 2588 417 : hrCysValSerTyrPheThrValLeu : 424 !!! !|||||||||!:!||||||:!! laSerValSerTyrTyrThrValMet 2587 : CATCTGTTTCCTACTACACGGTGATG : 2562 vulgar: gi|805795905|ref|XP_012143137.1| 363 424 . LHQN01027734.1 2829 2561 - 102 M 49 147 5 0 2 I 0 81 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 2562 2829 102 - . gene_id 2 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation + LHQN01027734.1 exonerate:protein2genome:local cds 2683 2829 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2683 2829 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 2681 2682 . - . intron_id 1 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 2598 2682 . - . intron_id 1 LHQN01027734.1 exonerate:protein2genome:local splice3 2598 2599 . - . intron_id 0 ; splice_site "AG" LHQN01027734.1 exonerate:protein2genome:local cds 2562 2597 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2562 2597 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 2562 2829 102 - . alignment_id 2 ; Query gi|805795905|ref|XP_012143137.1| ; Align 2830 364 147 ; Align 2598 413 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795896|ref|XP_012143135.1| PREDICTED: uncharacterized protein LOC100875381 [Megachile rotundata] Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 165 -> 245 Target range: 1227 -> 987 166 : LeuPheValSerIleProLeuSerSerProAlaLeuAspPheIleAlaProLeuAsnGluTh : 186 ||||||:!!..!:!:|||! !!!!!!!! ! !:!!:!!! ! ! !!! !||| !|| LeuPheIleGlnValProTrpThrThrArgMetValAsnSerTyrLysThrGlnAsnIleTh 1227 : TTGTTCATACAAGTGCCATGGACGACCCGAATGGTGAACTCGTACAAGACACAGAATATAAC : 1167 187 : rArgThrLysLeuProLeuPheLysLeuAsnTyrIleValAspMetArgAspHisPheTyrI : 207 |! !!:! !! ! !:!! ! ! !!|||.!!|||||| !!!::!!!:!||| rProSerLeuProValValValProGlyTyrTyrPheValAspGluValGluTyrTyrTyrT 1166 : GCCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTATT : 1104 208 : leValTyrLeuHisSerAlaTrpCysSerLeuIleIleValLeuIleValThrThrMetAsp : 227 !:!! ||||||.!!.!!!! !||||||:!!|||:!!:!: ! !.!! ||| yrIleIleLeuHisGlyThrCysThrValLeuIleValValValValTyrCysAlaCysAsp 1103 : ACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGAC : 1044 228 : SerLeuTyrMetValIleIleHisTyrAlaCysGlyLeuPheAlaLeuCysGly : 245 !!! !|||||||||:!::!:!!.:!!.!!|||||||||||||||:!!..!||| ThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly 1043 : ACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 988 vulgar: gi|805795896|ref|XP_012143135.1| 165 245 . LHQN01027734.1 1227 987 - 122 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 988 1227 122 - . gene_id 1 ; sequence gi|805795896|ref|XP_012143135.1| ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 988 1227 . - . LHQN01027734.1 exonerate:protein2genome:local exon 988 1227 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 988 1227 122 - . alignment_id 1 ; Query gi|805795896|ref|XP_012143135.1| ; Align 1228 166 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 323 Query range: 1 -> 165 Target range: 489 -> 3 2 : HisAspLysProIleThrGluGlnThrAspProGluIleLeuSerAspTyrSerLeuGlnLeuA : 23 :!!|||||| !!:!:..! !:!!! !:!! ! ! !||||||||||||||||||! !| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpA 489 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGA : 426 24 : snArgTrpLeuLeuLysSerIleGlyAlaTrpProLysSerSerSerThrThrLysThrGluLe : 44 |||||||| !:!!||||||||||||.!!||||||:!!! !|||||| !!. !||| snArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSer------AsnLeuGluAr 425 : ATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCG------AACCTCGAGAG : 369 45 : uThrValSerLeuIleLeuThrValIleGlyTyrThrThrIleLeuIleThrValIleProAla : 65 !!.!:!!|||! !||||||!.!|||||| !!||||||.!!||||||.!!:!!:!!||||||..! gAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCys 368 : AAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGT : 306 66 : IleLeuGlnLeuIleLeuGlyAspIleAspLeuHisThrLysValValLeuValGlyProMetS : 87 |||!!.|||!!:|||! ! ! !!!!:!!||||||||| !:!!:!!||||||:!!| SerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyProLeuS 305 : TCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGA : 240 88 : erHisTrpCysLeuGlyGlyIleGlyTyrThrMetLeuLeuMetHisAspGluGluIleLysTr : 108 |||||||| !!! !! !|||.!!|||||||||||||||:!!!.. !:!! ||| ! erHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHi 239 : GCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCA : 177 109 : pCysValGluArgValLysAsnAspTrpArgSerIleMetAsnProGluMetGlnGlnThrMet : 129 ! !|||.!.!.!:!!:!!!.!|||||||||!!!! ... ||| ::::::...||| sPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMet 176 : CTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATG : 114 130 : IleLysAsnAlaLysLeuSerArgTyrValValSerLeuCysAlaIleLeuMetGlnSerAlaV : 151 :!:||| !!||||||!!!|||||||||!.!!.!! !!!!|||||||||!!!!!:!!..!!!.!: LeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyI 113 : CTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTA : 48 152 : alLeuGlyPheGlyValGluLysAlaLeuSerThrGlnValIle : 165 !!||||||!:! !!||| !! !|||! !!!!|||..!|||:!! leLeuGlyTyrCysValMetThrAlaSerThrThrMetValVal 47 : TACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTC : 4 vulgar: gi|805766376|ref|XP_012135244.1| 1 165 . LHQN01027980.1 489 3 - 323 M 37 111 G 2 0 M 125 375 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4 489 323 - . gene_id 1 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4 489 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4 489 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 4 489 323 - . alignment_id 1 ; Query gi|805766376|ref|XP_012135244.1| ; Align 490 2 111 ; Align 379 41 375 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 246 Query range: 260 -> 351 Target range: 5518 -> 4207 261 : SerPheIleSerArgIleGluAlaIleMetAsnGluIleCysPheMetGluLeuPheLysCy : 281 |||||||||||||||:!!||||||!!:||||||:!! ||||||:!!||||||.!.!:!|| SerPheIleSerArgLeuGluAlaMetMetAsnLysAlaCysPheLeuGluLeuMetArgCy 5518 : AGCTTCATATCGCGCTTAGAGGCAATGATGAACAAAGCGTGTTTCCTGGAGTTAATGAGGTG : 5458 282 : sThrPheSerIleCysLeuLeuGlyPheAsnIleIleLeu >>>> Target Intron 1 : 295 ||||.!.:!!|||||| !:!!|||!:! !!|||.!!:!! 1038 bp sThrMetAlaIleCysAlaIleGlyTyrTyrIlePheMet++ 5457 : CACGATGGCTATTTGCGCAATTGGATATTATATATTCATGgt.................... : 5414 296 : >>>> CysAsnLysIleGlyGluAlaIleTyrMetSerAsnTrpTyrTyrLeuAlaAspL : 313 ||| |||:!!||||||!.!:!!||||||!!!:!!|||||||||||| !!.!.! ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 5413 : .....agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 4324 314 : ysAspIleHisAsnLeuMetMetIleIleSerArgSerCysValGluThrLysIleThrAla : 333 :! |||! !:!!|||!!::!!||||||!!!|||||| !|||! ..!:!!||||||||| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAla 4323 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGct : 4264 334 : GlyLysIleValHisMetSerPheTyrThrLeuAlaSerValIleLysSerSer : 351 ||||||||| |||||||||.!!||||||!!!!.!..!|||! !:!!!!!!:! GlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 4263 : ggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 4208 vulgar: gi|805766376|ref|XP_012135244.1| 260 351 . LHQN01027980.1 5518 4207 - 246 M 34 102 5 0 2 I 0 1034 3 0 2 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4208 5518 246 - . gene_id 2 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 5417 5518 . - . LHQN01027980.1 exonerate:protein2genome:local exon 5417 5518 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 5415 5416 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 5416 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4208 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4208 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4208 5518 246 - . alignment_id 2 ; Query gi|805766376|ref|XP_012135244.1| ; Align 5519 261 102 ; Align 4379 295 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 295 -> 338 Target range: 1984 -> 1855 296 : AsnLysIleGlyGluAlaIleTyrMetSerAsnTrpTyrTyrLeuAlaAspLysAspIleHi : 316 !.!|||:!!|||! ! !:!:||||||!!!.!.|||||| |||:!!.!.||| ! !! ThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLe 1984 : ACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCT : 1924 317 : sAsnLeuMetMetIleIleSerArgSerCysValGluThrLysIleThrAlaGlyLysIleV : 337 !..!!!!:!:|||||||||||||||||| !!:!!! !! !||||||||||||||||||.!!| uGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheV 1923 : CGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCG : 1861 338 : alHis : 338 ||:!! alTyr 1860 : TATAC : 1856 vulgar: gi|805766376|ref|XP_012135244.1| 295 338 . LHQN01027980.1 1984 1855 - 107 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1856 1984 107 - . gene_id 3 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1856 1984 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1856 1984 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1856 1984 107 - . alignment_id 3 ; Query gi|805766376|ref|XP_012135244.1| ; Align 1985 296 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 310 Query range: 0 -> 158 Target range: 495 -> 27 1 : MetAsnSerSerAspLysLeuIleThrAsnThrArgTyrLeuGlnAspTyrGluTyrSerIleG : 22 |||!:!!:!..! ! ! :!!:!!|||.!.! !!.! ! ..! !!!:||||||:!!| MetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuG 495 : ATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCC : 432 23 : lnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProArgAlaSerThrAlaSerIleAl : 43 ||! !||||||||| :!!||| !||||||..!||||||!:! !||| |||! ! lnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSer------SerAsnLe 431 : AGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCG------TCGAACCT : 375 44 : aGluLysIleLeuAlaIleValLeuAsnValAlaCysHisValLeuIleIlePheThrPheVal : 64 !|||!:!! !:!!:!! !:!!||||||||| !|||:!!..! !|||:!!|||:!!.!.:!! uGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIle 374 : CGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATC : 312 65 : ProCysLeuLeuPheIleLeuPheGluGluAlaSerPheGlnThrArgIleLysAlaIleGlyP : 86 ||||||! !||| !:!!:!!.!.|||:!!!.!!!!||| ! |||!:!:!:||| !:!!|||| ProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyP 311 : CCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTC : 246 87 : roMetSerHisTrpIleMetGlyGluLeuAsnTyrCysPheLeuThrMetArgGlyGlnAspIl : 107 ||:!!|||||||||:!:.!. !! :!!!:!||| !.!.||| !:!!||| !!:!! !|| roLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIl 245 : CGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCAT : 183 108 : eLeuHisCysIleGluHisIleGlySerAspTrpGlnThrValLysArgAlaSerAspArgGlu : 128 |! !|||! !:!!.!.|||!!:! !!!!||||||::!|||..! ||| ... :::||| eHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGlu 182 : ACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaa : 120 129 : ValMetLeuLysAsnValLysPheGlyArgLeuIleAlaCysLeuAlaAlaValGlyMetAsnV : 150 |||||||||||| !!!.!||||||.!!|||! ! ||| !!!!..!|||:!! !!!::!!! ValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisG 119 : gtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACG : 54 151 : alGlyValPheSerTyrIleValIle : 158 !|||:!!.!!.!!||| !|||!!: lyGlyIleLeuGlyTyrCysValMet 53 : GTGGTATACTTGGATATTGTGTTATG : 28 vulgar: gi|805766364|ref|XP_012135240.1| 0 158 . LHQN01027980.1 495 27 - 310 M 38 114 G 2 0 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 28 495 310 - . gene_id 1 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 28 495 . - . LHQN01027980.1 exonerate:protein2genome:local exon 28 495 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 28 495 310 - . alignment_id 1 ; Query gi|805766364|ref|XP_012135240.1| ; Align 496 1 114 ; Align 382 41 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 213 Query range: 299 -> 393 Target range: 4575 -> 4201 300 : ThrGluLysSerLysAspThrLeuAlaSerTyrAlaIleIleTyrAlaSerMetSerPheAs : 320 ||||||!....! .!.! !||| !!!!||| !:!!! ! !!.!:!!:!: ! || ThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValValSerAs 4575 : ACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTGTTtctaa : 4515 321 : nIlePheIlePheCysTyrIleGlyGluArgLeuThrGluGln >>>> Target Intro : 335 | |||:::...|||||||||.!!!!:||||||||||||||| 92 bp nThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4514 : tacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt................. : 4468 336 : n 1 >>>> CysLysLysValGlyGluLysAlaTyrSerValGluTrpTyrArgLeuSerH : 352 ||| !|||||||||||| !!.!|||! !..!!!:|||||| !||| !!! ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProG 4467 : ........agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCAC : 4327 353 : isArgThrAlaLeuSerLeuValMetIleIleSerArgSerSerMetValIleLysIleThr : 372 !.|||! ! !|||..!|||:!!:!!||||||!!!||||||!:!:!!|||:!!:!!|||||| lnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThr 4326 : AGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACC : 4267 373 : AlaGlyLysIleIleArgIleSerLeuAlaThrPheGlyAspValSerIleLysThrLeuIl : 393 ||||||||||||......:::|||||| !|||||||||||||||||| !! !.!|||:! AlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeuVa 4266 : GctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTTGT : 4204 394 : e : 393 ! l 4203 : T : 4202 vulgar: gi|805766364|ref|XP_012135240.1| 299 393 . LHQN01027980.1 4575 4201 - 213 M 35 105 5 0 2 I 0 88 3 0 2 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4202 4575 213 - . gene_id 2 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4575 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4575 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4202 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4202 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4202 4575 213 - . alignment_id 2 ; Query gi|805766364|ref|XP_012135240.1| ; Align 4576 300 105 ; Align 4379 335 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 169 Query range: 333 -> 389 Target range: 1990 -> 1816 334 : GlnCysLysLysValGlyGluLysAlaTyrSerValGluTrpTyrArgLeuSerHisArgTh : 354 :!! !! |||||||||! !|||!.!|||! !..!||||||||||||||||||!!.!:!|| GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysTh 1990 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAAC : 1930 355 : rAlaLeuSerLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyL : 375 |||||||.!!!!!||||||||||||||||||||||||||||||||||||||||||||||||| rAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyL 1929 : TGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAA : 1867 376 : ysIleIle<-><->ArgIleSerLeuAlaThrPheGlyAspValSerIle : 389 ||.!!:!! ! ! |||:!!|||||||||||||||||||||||| ysPheValTyr***ThrSerSerValAlaThrPheGlyAspValSerIle 1866 : AATTCGTATACTGAACATCGTCTGTCGCAACATTTGGCGATGTGagtatt : 1817 vulgar: gi|805766364|ref|XP_012135240.1| 333 389 . LHQN01027980.1 1990 1816 - 169 M 44 132 G 0 6 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1817 1990 169 - . gene_id 3 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1817 1990 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1817 1990 . - . insertions 6 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1817 1990 169 - . alignment_id 3 ; Query gi|805766364|ref|XP_012135240.1| ; Align 1991 334 132 ; Align 1853 378 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 563 Query range: 1 -> 298 Target range: 1118 -> 144 2 : HisAspLysProIleThrGluGlnThrAspProGluIleLeuSerAspTyrSerLeuGlnLe : 22 :!!|||||| !!:!:..! !:!!! !:!! ! ! !||||||||||||||||||! AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTr 1118 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTG : 1058 23 : uAsnArgTrpLeuLeuLysSerIleGlyAlaTrpProLysSerSerSerThrThrLysThrG : 43 !||||||||| !:!!|||||||||||||||||||||:!!||||||||| !!. !| pAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSerSer------AsnLeuG 1057 : GAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCGTCG------AATCTCG : 1001 44 : luLeuThrValSerLeuIleLeuThrValIleGlyTyrThrThrIleLeuIleThrValIle : 63 || !! !:!!|||! !||||||!.!|||||| !!||||||.!!:!!|||.!!|||:!!||| luArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIle 1000 : AGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATC : 941 64 : ProAlaIleLeuGlnLeuIleLeuGlyAspIleAspLeuHisThrLysValValLeuValGl : 84 |||..! |||!!.:!!!!:|||! ! ! !!!!:!!||||||||| !:!!:!!|| ProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGl 940 : CCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGG : 878 85 : yProMetSerHisTrpCysLeuGlyGlyIleGlyTyrThrMetLeuLeuMetHisAspGluG : 105 ||||:!!||||||||| !!! !! !|||.!!|||||||||||||||:!!!.. !:!! yProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysT 877 : TCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAA : 815 106 : luIleLysTrpCysValGluArgValLysAsnAspTrpArgSerIleMetAsnProGluMet : 125 |||::: ! ! !!.!.!.!:!!:!!!.!|||||||||!!!! |||... ||| hrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLys 814 : CCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaag : 755 126 : GlnGlnThrMetIleLysAsnAlaLysLeuSerArgTyrValValSerLeuCysAlaIleLe : 146 :::::: |||:!:||| !!||||||!!!|||||||||!.!!.!! !! !|||.!!|||!! LysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePh 754 : aaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTT : 692 147 : uMetGlnSerAlaValLeuGlyPheGlyValGluLysAlaLeuSerThrGlnValIleThrV : 167 !!!:!!..!!!.!:!!||||||!:! !!||| !! !|||!!!!!!|||..!|||:!!..!| eIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValV 691 : CATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGG : 629 168 : alGlyAsnGluThrLysValValHisMetLeuProCysAlaThrTyrArgLysLeuLeuPro : 187 ||||||||||||||! !:!!:!!!.!:!!||||||! !!! !|||!:! !||||||||| alGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuPro 628 : TTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCA : 569 188 : ValAspThrSerProThrPheGluIleValLeuValAlaGlnLeuValSerGlyPhePheVa : 208 |||||||||!:! !!! ! !||||||||||||:!!:!!|||!!!:!!|||||||||.!.!. ValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAl 568 : GTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGC : 506 209 : lAsnGlyThrPheAlaGlyAlaPheSerLeuAlaSerAlaPheThrLeuHisAlaTyrSerG : 229 !||| !!:! !.!!!.!.!.||||||.!!||||||.!.|||! !||||||! !.!!| aAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyG 505 : GAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCC : 443 230 : lnLeuAsnIleLeuAlaThrTrpIleThrGluAlaValAspGlnSerSerLeuAsn{A} > : 248 |||||..!:!::!! ! !! !||| !!!: !|||..!.!.:!!!!!! !!..{|} lnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArg{A}+- 442 : AGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGA{G}gg. : 383 249 : >>> Target Intron 1 >>>> {sp}ValGlyAlaIleValArgLysHisLeuAlaIl : 259 92 bp {||} |||..!:!! !! !! !! !!.!! -+{sp}---GlyCysValSerLeuIleValSerValAs 382 : ........................cg{AT}---GGGTGTGTTTCTCTGATCGTTTCTGTTAA : 264 260 : eLeuSerPheIleSerArgIleGluAlaIleMetAsnGluIleCysPheMetGluLeuPheL : 280 !! !||||||||||||||||||||||||!!:!!:|||:!! ||||||:!!|||||| ! nTyrSerPheIleSerArgIleGluAlaMetIleAsnLysAlaCysPheLeuGluLeuThrA 263 : TTACAGCTTCATATCGCGCATAGAGGCAATGATAAACAAAGCGTGTTTCCTGGAGTTAACGA : 201 281 : ysCysThrPheSerIleCysLeuLeuGlyPheAsnIleIleLeuCysAsnLysIle : 298 :!||||||.!.:!!||||||:!!||||||!:! !!|||.!!:!! :!! !||| rgCysThrIleAlaIleCysValLeuGlyTyrTyrIlePheMetValAspValIle 200 : GGTGCACGATAGCTATATGCGTACTTGGATATTATATATTCATGGTAGATGTAATT : 145 vulgar: gi|805766376|ref|XP_012135244.1| 1 298 . LHQN01028641.1 1118 144 - 563 M 37 111 G 2 0 M 207 621 S 0 1 5 0 2 I 0 88 3 0 2 S 1 2 G 1 0 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 145 1118 563 - . gene_id 1 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 386 1118 . - . LHQN01028641.1 exonerate:protein2genome:local exon 386 1118 . - . insertions 0 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local splice5 384 385 . - . intron_id 1 ; splice_site "GG" LHQN01028641.1 exonerate:protein2genome:local intron 294 385 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 294 295 . - . intron_id 0 ; splice_site "CG" LHQN01028641.1 exonerate:protein2genome:local cds 145 293 . - . LHQN01028641.1 exonerate:protein2genome:local exon 145 293 . - . insertions 0 ; deletions 1 LHQN01028641.1 exonerate:protein2genome:local similarity 145 1118 563 - . alignment_id 1 ; Query gi|805766376|ref|XP_012135244.1| ; Align 1119 2 111 ; Align 1008 41 621 ; Align 292 250 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766358|ref|XP_012135239.1| PREDICTED: uncharacterized protein LOC100875508 [Megachile rotundata] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 297 Query range: 21 -> 272 Target range: 1073 -> 323 22 : AspLeuSerValArgLeuAsnArgTrpIleLeuLysProIleAlaAlaTrpProGluSerSe : 42 |||! !|||:!!!:!! !||||||||| :!!||| !|||!.!|||||||||:!!||||| AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSe 1073 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTC : 1013 43 : rThrValSerProMetLysLysTyrLeuSerTrpPheValHisValValCysTyrPheLeuM : 63 | ||| !:!::!!!:! !:!!||| ! .!.:!!:!!|||:!!|||||| ! !: r------SerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaV 1012 : G------TCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAG : 956 64 : etSerPheLeuPheValProCysLeuIlePheLeuIleLeuGluValAsnGlyThrTyrAsn : 83 !: !||| !.!.:!!||||||! !:!: !:!!!!:|||||| !.!. ! !|||!.. alLeuPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThr 955 : TACTATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACG : 896 84 : ArgIleLysLeuPheGlyProLeuSerSerProLeuMetSerTyrSerLysTyrTyrLeuLe : 104 !:!:!:|||:!!.!!|||||||||||| ! !:!!.!.!!! !! !!..||| !:!!|| LysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLe 895 : AAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCT : 833 105 : uLeuLeuHisLysAsnAspIleLeuLysCysValLysGlnIleGluTrpAspTrpArgAsnM : 125 |||||||!..:::!!. !|||! ! ! ! ! !!!!.!!.!!:||| |||||||||!..! uLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrT 832 : GTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGA : 770 126 : etLysHisLeuGluGluLysArgIleMetValAlaAsnAlaAsnTyrAlaArgArgIleVal : 145 !! ... |||:::|||...||||||:!! ! !!|||!!.!:!::!||| ! !.! hrMetArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAla 769 : CGAtgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCG : 710 146 : IleValCysThrPhePheMetCysSerSerTyrMetPhePheTyrIleAlaValProIleTh : 166 ||| !||||||.!!|||!!: !.!!.!! :!: !:!! !:!! !..! !!.!!|| IleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheTh 709 : ATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCAC : 647 167 : rValGlyArgIleProAlaGlnAspGlyAsnPheThrPheIleLeuLeuProPheProSerP : 187 |..! ! !:!! !!.! !:!!! !!.!.!.! !!!. !:!!||||||!!.|||! ! rThrMetValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetT 646 : CACGATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGT : 584 188 : roMetArgIleThrAspTyrArgGlnSerProValAsnGluIlePheTyrPheLeuGlnCys : 207 !! !!:!! ! ! ! !!:! !!:!!||||||||| !! !!!.! !|||! ! yrLysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPhe 583 : ACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTT : 524 208 : LeuAlaGlyIleLeuLeuArgValIleThrAlaGlyAlaCysSerLeuAlaAlaThrPheAl : 228 |||:!!|||.!!:!! !!.!..!! !.!! !.!!!.! ||||||.!!::!.!!.!..! LeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuTh 523 : CTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAAC : 461 229 : aValHisAlaCysGlyGlnMetGluIleLeuMetAsnTrpLeu<->GlyTyrLeuValAsnG : 248 ! !||||||! !||||||:!!! :!::!!||| ! !:!! ! !!:!:!! !:!!! rSerHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspA 460 : ATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATG : 398 249 : lyArgAlaAspMetSerLysAsnLeuAspGlyArgIleAlaArgIleValGluGlnHisVal : 268 .!||| ! !!.! ! :!!! ! !! !..!||| !!! !|||||||||:!!|||:!! laArgArgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHisLeu 397 : CGAGACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTG : 338 269 : ArgIleLeuArg : 272 |||:!:|||!:! ArgValLeuLys 337 : AGAGTGTTGAAG : 324 vulgar: gi|805766358|ref|XP_012135239.1| 21 272 . LHQN01028641.1 1073 323 - 297 M 21 63 G 2 0 M 198 594 G 0 3 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 324 1073 297 - . gene_id 1 ; sequence gi|805766358|ref|XP_012135239.1| ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 324 1073 . - . LHQN01028641.1 exonerate:protein2genome:local exon 324 1073 . - . insertions 3 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local similarity 324 1073 297 - . alignment_id 1 ; Query gi|805766358|ref|XP_012135239.1| ; Align 1074 22 63 ; Align 1011 45 594 ; Align 414 243 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 459 Query range: 0 -> 276 Target range: 1124 -> 296 1 : MetAsnSerSerAspLysLeuIleThrAsnThrArgTyrLeuGlnAspTyrGluTyrSerIl : 21 |||!:!!:!..! ! ! :!!:!!|||.!.! !!.! ! ..! !!!:||||||:! MetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLe 1124 : ATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCT : 1064 22 : eGlnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProArgAlaSerThrAlaSerI : 42 !|||! !||||||||| :!!||| !||||||!.!||||||!:!:!!||| |||! uGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSer------SerA 1063 : CCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCG------TCGA : 1007 43 : leAlaGluLysIleLeuAlaIleValLeuAsnValAlaCysHisValLeuIleIlePheThr : 62 ! !|||!:!|||:!!:!! !:!!||||||||| !|||:!!..! !:!!:!!|||||| snLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThr 1006 : ATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACG : 947 63 : PheValProCysLeuLeuPheIleLeuPheGluGluAlaSerPheGlnThrArgIleLysAl : 83 .!.:!!||||||! !||| !:!!:!!.!.|||:!!! !!!!||| ! |||!:!:!:||| IleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIl 946 : ATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAAT : 884 84 : aIleGlyProMetSerHisTrpIleMetGlyGluLeuAsnTyrCysPheLeuThrMetArgG : 104 !:!!||||||:!!|||||||||:!:.!. !! :!!!:!||| !.!.||| !:!!||| eLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgA 883 : ACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGAC : 821 105 : lyGlnAspIleLeuHisCysIleGluHisIleGlySerAspTrpGlnThrValLysArgAla : 124 !!:!! !|||! !|||! !.!!.!.|||!!:! !!!!||||||::!|||..!! ||| rgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLys 820 : GTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaag : 761 125 : SerAspArgGluValMetLeuLysAsnValLysPheGlyArgLeuIleAlaCysLeuAlaAl : 145 ... :::|||:::||||||||| !!!.!||||||.!!|||! ! ||| !! !..!.! GluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysTh 760 : gagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTAC : 698 146 : aValGlyMetAsnValGlyValPheSerTyrIleValIle<->GlyPheArgLysIleValP : 165 !:!! !!!::!!! !|||:!!.!!.!!||| !|||!!: !.!|||! !! !!!:||| rIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValV 697 : GATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTG : 635 166 : heHisValGlyAsnGluSerPheLeuMetTyrArgLeuProCysProValTyrThrLysLeu : 185 !! ||||||||||||!!!.!.:!!:!! ! !||||||! |||:!!|||! ! !||| alValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeu 634 : TCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTC : 575 186 : LeuAsnValLysLeuSerProAlaAsnGluIleValPheAlaLeuGlnValLeuSerGlyPh : 206 ||| ||| ! !!:! !! !||||||||||||.!! !! !||| !!||||||||||| LeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPh 574 : CTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATT : 512 207 : eIleValAsnSerValThrValGlyAlaCysGlyLeuAlaAlaIleLeuAlaMetHisAlaC : 227 ||||!.!|||!!! !.!!:!!.!!!.! .!!|||.!!::! !|||.!! ||||||! eIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaS 511 : TATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGT : 449 228 : ysGlyGlnLeuAsnValMetMetSerArgMetAspGluLeuValGlyAlaGlyValGluGlu : 247 !|||||||||..!|||:!:|||! ! !!!:!!:!!:!!!|||.!!! !!.! !.....! erGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArg 448 : CTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGA : 389 248 : GlnArgValValLys<->LysLysLeuAlaAspIleValGluHisHisLeuArgThrLeuSe : 267 !!:!! !! ! ! ! :!!:!! !! ||||||||| ! |||||||||..!|||!. GlyLysAspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeuLy 388 : GGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTGAA : 326 268 : rPheValTrpTyrIleGluLysIleMet : 276 !! |||!! ! :!:!!: !|||:!! s***ValCysLeuLeuAspLeuIleLeu 325 : GTAAGTATGTTTGTTGGATTTGATTTTG : 297 vulgar: gi|805766364|ref|XP_012135240.1| 0 276 . LHQN01028641.1 1124 296 - 459 M 38 114 G 2 0 M 118 354 G 0 3 M 94 282 G 0 3 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 297 1124 459 - . gene_id 1 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 297 1124 . - . LHQN01028641.1 exonerate:protein2genome:local exon 297 1124 . - . insertions 6 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local similarity 297 1124 459 - . alignment_id 1 ; Query gi|805766364|ref|XP_012135240.1| ; Align 1125 1 114 ; Align 1011 41 354 ; Align 654 159 282 ; Align 369 253 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 280 Query range: 287 -> 376 Target range: 1698 -> 1233 288 : ValPheLeuThrIleGlnLeuLeuHisIlePhePheLeuAlaIleGlnGlyGlnPheMetIl : 308 ..!|||!!!..! !||| !!!!|||:!!||||||||| !:!!||||||||||||:!!|| ThrPhePheValGlyGlnAlaPheHisValPhePheLeuAsnValGlnGlyGlnPheValIl 1698 : ACGTTTTTCGTCGGCCAAGCGTTTCACGTTTTCTTTTTGAACGTCCAGGGACAATTTGTGAT : 1638 309 : eAsnArgThrAspIleValTyrAsnGln{Il} >>>> Target Intron 1 >>>> { : 318 |||| ! !||| !:!!|||:!!:!!{||} 113 bp { eAsnAlaPheAspGluLeuTyrAspLys{Il}++ ++{ 1637 : AAACGCGTTCGACGAACTGTACGACAAG{AT}gt.........................ag{ : 1493 319 : e}TyrGluGlyGlnTrpTyrAsnSerValProLysThrGlnGluLeuPheIleLeuAlaLeu : 338 |}||||||..!||||||||||||! !..!|||!:!||||||! !|||!:!:!!||||||||| e}TyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeu 1492 : A}TACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTG : 1435 339 : ArgThrAlaMetAsnProProGlnIleThrAlaGlyGlyValIleAlaMetAsnLeuGlnTh : 359 |||!:!..!:!:|||||||||! !:!!||||||||||||:!!! .!!:!!||||||!:!:! ArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSe 1434 : AGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATC : 1372 360 : rPheAlaGlu >>>> Target Intron 2 >>>> ValValLysValSerPheSerTy : 370 !||||||||| 85 bp :!!:!!|||!.!||| !!||||| rPheAlaGlu++ ++IleIleLysAlaSerValSerTy 1371 : GTTCGCAGAGgt.........................agATCATCAAAGCATCTGTTTCCTA : 1254 371 : rTyrThrValLeuGlnThr : 376 ||||||||||:!!|||||| rTyrThrValMetGlnThr 1253 : CTACACGGTGATGCAGACC : 1234 vulgar: gi|805793799|ref|XP_012142565.1| 287 376 . LHQN01028732.1 1698 1233 - 280 M 30 90 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 44 132 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1234 1698 280 - . gene_id 1 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 1607 1698 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1607 1698 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 1605 1606 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 1494 1606 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 1494 1495 . - . intron_id 0 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 1361 1493 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1361 1493 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 1359 1360 . - . intron_id 2 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 1276 1360 . - . intron_id 2 LHQN01028732.1 exonerate:protein2genome:local splice3 1276 1277 . - . intron_id 1 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 1234 1275 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1234 1275 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1234 1698 280 - . alignment_id 1 ; Query gi|805793799|ref|XP_012142565.1| ; Align 1699 288 90 ; Align 1493 319 132 ; Align 1276 363 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 271 Query range: 273 -> 363 Target range: 7969 -> 7629 274 : LeuSerLysMetLysProCysAlaGlnPheTyrGluTyrIleValPheLeuThrIleGlnLe : 294 :!!|||! !|||!!.||||||!.!:!!||||||:!!||| !! !||||||..!:!:||||| ValSerThrMetAsnProCysValGluPheTyrLysTyrCysGlyPheLeuValValGlnLe 7969 : GTATCCACGATGAACCCTTGCGTGGAGTTCTACAAGTATTGCGGTTTCTTGGTGGTGCAACT : 7909 295 : uLeuHisIlePhePheLeuAlaIleGlnGlyGlnPheMetIleAsnArgThrAspIleValT : 315 |:!!|||:!:.!!||||||:!!|||||||||!!.|||:!:||| ! ! !|||! ..!| uValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleValSerHisAspThrThrT 7908 : GGTACATTTGCTTTTCCTTTCTATCCAGGGACACTTCGTTATAGTCTCGCATGACACGACTT : 7846 316 : yrAsnGln{Il} >>>> Target Intron 1 >>>> {e}TyrGluGlyGlnTrpTyr : 324 ||:!!.!.{||} 70 bp {|}|||...!.! !|||||| yrAspAsn{Il}++ ++{e}TyrSerAlaThrTrpTyr 7845 : ACGATAAT{AT}gt.........................ag{A}TACAGCGCTACATGGTAC : 7749 325 : AsnSerValProLysThrGlnGluLeuPheIleLeuAlaLeuArgThrAlaMetAsnProPr : 345 |||.!!..!||||||..!|||! |||!:!:!:||||||||||||! ! !:!!!.!||||| AsnGlyThrProLysValGlnAlaLeuTyrValLeuAlaLeuArgArgAsnLeuThrProPr 7748 : AACGGTACACCGAAAGTGCAAGCTTTATACGTGCTAGCTTTGAGAAGGAACTTGACTCCACC : 7686 346 : oGlnIleThrAlaGlyGlyValIleAlaMetAsnLeuGlnThrPheAlaGluVal : 363 |! !|||||||||||||||:!!|||:!!:!!||||||:!!||||||||||||||| oLeuIleThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGluVal 7685 : GCTGATTACTGCCGGAGGACTGATCTCCTTGAATTTGGAGACTTTCGCGGAGGTA : 7630 vulgar: gi|805793799|ref|XP_012142565.1| 273 363 . LHQN01028732.1 7969 7629 - 271 M 44 132 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 7630 7969 271 - . gene_id 2 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 7836 7969 . - . LHQN01028732.1 exonerate:protein2genome:local exon 7836 7969 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 7834 7835 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 7766 7835 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 7766 7767 . - . intron_id 0 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 7630 7765 . - . LHQN01028732.1 exonerate:protein2genome:local exon 7630 7765 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 7630 7969 271 - . alignment_id 2 ; Query gi|805793799|ref|XP_012142565.1| ; Align 7970 274 132 ; Align 7765 319 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 224 Query range: 136 -> 216 Target range: 5660 -> 5420 137 : LeuPheLeuGlnMetProTrpTrpProArgValAlaAspIleLeuMetProLeuAsnAlaSe : 157 ||||||:!! :!!|||!:: ! !!! !:!! !|||||||||||||||||||||! !!! LeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluTh 5660 : CTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGAC : 5600 158 : rArgProArgGlyTyrIlePheProAlaTyrTyrTyrValAspAspAspLysTyrTyrTyrT : 178 !||| !!||| !!:!:!!!:!||||||||||||!:!||||||!!:||||||||| !|||! rArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrL 5599 : GCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACT : 5537 179 : rpIleIleAlaTyrSerSerIleAlaThrIleIleThrValCysGlyTyrIleAlaCysAsp : 198 !|||:!!!.!:!!! !! !:!!!.!..!:!!!!: !:!!! !! !!:! !||||||||| euIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAsp 5536 : TGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGAT : 5477 199 : IleTyrPheIleTyrAlaValGlnHisAlaCysGlyLeuPheThrValAlaGly : 216 ! !!!:!:!:|||||||||||||||||||||||||||!!..!!:!!|||||| AlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5476 : GCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5421 vulgar: gi|805793799|ref|XP_012142565.1| 136 216 . LHQN01028732.1 5660 5420 - 224 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5660 224 - . gene_id 3 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5660 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5660 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5660 224 - . alignment_id 3 ; Query gi|805793799|ref|XP_012142565.1| ; Align 5661 137 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 158 Query range: 318 -> 363 Target range: 4475 -> 4340 319 : TyrGluGlyGlnTrpTyrAsnSerValProLysThrGlnGluLeuPheIleLeuAlaLeuAr : 339 ||||||..! !|||||||||||| ! !|||||||||! !|||!:!|||||||||||||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeuAr 4475 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTACG : 4415 340 : gThrAlaMetAsnProProGlnIleThrAlaGlyGlyValIleAlaMetAsnLeuGlnThrP : 360 |!:!::!:!:||||||||| !:!!|||||||||||| !!|||.!!:!!||||||:!!|||| gSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLysThrP 4414 : GAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAGACCT : 4352 361 : heAlaGluVal : 363 ||:!!|||||| heSerGluVal 4351 : TCTCAGAGGTA : 4341 vulgar: gi|805793799|ref|XP_012142565.1| 318 363 . LHQN01028732.1 4475 4340 - 158 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 4341 4475 158 - . gene_id 4 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 4341 4475 . - . LHQN01028732.1 exonerate:protein2genome:local exon 4341 4475 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 4341 4475 158 - . alignment_id 4 ; Query gi|805793799|ref|XP_012142565.1| ; Align 4476 319 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 128 -> 188 Target range: 1884 -> 1704 129 : AlaSerAlaTyrPheAlaMetMetLeuPheLeuGlnMetProTrpTrpProArgValAlaAs : 149 ||| ! !!:!.!! !! ! :!!|||||| :!!|||!:: |||! !:!! !|| AlaHisLeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAs 1884 : GCGCATTTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGA : 1824 150 : pIleLeuMetProLeuAsnAlaSerArgProArgGlyTyrIlePheProAlaTyrTyrTyrV : 170 ||||! ! !||||||||| !!!!||| !|||! !!:!:!!!:!||||||||||||!::: pIleCysAlaProLeuAsnLysThrArgLysArgValPheValTyrProAlaTyrTyrTrpM 1823 : CATTTGCGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGA : 1761 171 : alAspAspAspLysTyrTyrTyrTrpIleIleAlaTyrSerSerIleAlaThrIle : 188 !!||| !!!::!!|||||| !!:||| !:!!! !!.!:!: !..!:!: etAspProGluGlnTyrTyrMetIleMetIleIleHisIleLysLeuLysValVal 1760 : TGGATCCTGAGCAATACTACATGATAATGATAATACACATAAAGTTGAAGGTTGTG : 1705 vulgar: gi|805793799|ref|XP_012142565.1| 128 188 . LHQN01028732.1 1884 1704 - 117 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1705 1884 117 - . gene_id 5 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 1705 1884 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1705 1884 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1705 1884 117 - . alignment_id 5 ; Query gi|805793799|ref|XP_012142565.1| ; Align 1885 129 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 149 Query range: 161 -> 257 Target range: 5696 -> 5408 162 : ThrLeuTyrArgSerSerLeuTrpIlePheValSerLeuPheLeuCysIleProLeuSerSe : 182 |||!!! ! !:! ! !:!!! !:!!! !!.!:!!||||||:!!|||:!:|||!!! !|| ThrPheGluLysValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSe 5696 : ACGTTTGAAAAAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTC : 5636 183 : rPheAlaLeuAspIleIleValProLeuAsnGluSerArgProArgValSerLeuPheLysL : 203 | !|||||||||:!!:!!||||||||||||!!!||| !!|||:!!! !:!!!:! ! rProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProA 5635 : GCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAG : 5573 204 : euAsnTyrIleMetAspMetGluAspHisPheTyrIleValTyrLeuHisSerAlaCysCys : 223 ! !!|||.!!:!:||| !!!: ! :!! !|||:!::!! !|||! ! ! ! laTyrTyrPheValAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuVal 5572 : CTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTA : 5513 224 : AlaLeuAsnValValLeuIleValThrThrMetAspSerLeuTyrMetValIleIleHisTy : 244 !.!:!!! :!!:!!! !:!! !! !.!! |||:!! !|||:!! ! !:!:!!.:! ValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHi 5512 : GTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACA : 5450 245 : rSerCysGlyLeuPheAlaLeuCysGlyTyrGlnIleGln : 257 !:!!|||||||||!!.|||:!!...|||!! !:!!||| sAlaCysGlyLeuLeuAlaIleAlaGly***LeuValGln 5449 : CGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAA : 5409 vulgar: gi|805795905|ref|XP_012143137.1| 161 257 . LHQN01028732.1 5696 5408 - 149 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5409 5696 149 - . gene_id 1 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5409 5696 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5409 5696 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5409 5696 149 - . alignment_id 1 ; Query gi|805795905|ref|XP_012143137.1| ; Align 5697 162 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 165 -> 219 Target range: 1884 -> 1722 166 : SerSerLeuTrpIlePheValSerLeuPheLeuCysIleProLeuSerSerPheAlaLeuAs : 186 :!! !|||!:::!! !!.!:!!:!!|||||||||:!:|||!!!:!! !!.!! !||||| AlaHisLeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAs 1884 : GCGCATTTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGA : 1824 187 : pIleIleValProLeuAsnGluSerArgProArgValSerLeuPheLysLeuAsnTyrIleM : 207 |||| !!.!|||||||||:!!!!!||| !||||||! !:!!!:! ! ! !!||| | pIleCysAlaProLeuAsnLysThrArgLysArgValPheValTyrProAlaTyrTyrTrpM 1823 : CATTTGCGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGA : 1761 208 : etAspMetGluAspHisPheTyrIleValTyrLeuHis : 219 ||||| |||.!.:!!!:! |||:!! :!!||| etAspProGluGlnTyrTyrMetIleMetIleIleHis 1760 : TGGATCCTGAGCAATACTACATGATAATGATAATACAC : 1723 vulgar: gi|805795905|ref|XP_012143137.1| 165 219 . LHQN01028732.1 1884 1722 - 113 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1723 1884 113 - . gene_id 2 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 1723 1884 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1723 1884 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1723 1884 113 - . alignment_id 2 ; Query gi|805795905|ref|XP_012143137.1| ; Align 1885 166 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795905|ref|XP_012143137.1| PREDICTED: uncharacterized protein LOC100875831 [Megachile rotundata] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 363 -> 424 Target range: 1507 -> 1239 364 : LeuIleAspAlaIleTyrSerSerLysTrpTyrGlnThrProIleLysPheGlnArgValLe : 384 |||:!! !..!! !|||..!|||:!!||||||.!. ! !! !!:! ||| !:!!! LeuValLeuCysArgTyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTy 1507 : CTTGTCCTTTGCAGATACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTA : 1447 385 : uGluIleMetGlnIleArgCysSerArgProCysLysLeuThrAlaGlyGlyLeuTyrGluM : 405 !! !:!: !! !!!!||| !!.!||| ! !|||||||||||||||:!! !: rValLeuAlaLeuArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrL 1446 : TGTATTGGCATTGAGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGT : 1384 406 : etAsnIleGluAsnPheGlySer >>>> Target Intron 1 >>>> MetIleLysT : 416 !!|||:!!..!:::|||!.!..! 85 bp !!:||||||. euAsnLeuArgSerPheAlaGlu++ ++IleIleLysA 1383 : TGAATCTACGATCGTTCGCAGAGgt.........................agATCATCAAAG : 1266 417 : hrCysValSerTyrPheThrValLeu : 424 !!! !|||||||||!:!||||||:!! laSerValSerTyrTyrThrValMet 1265 : CATCTGTTTCCTACTACACGGTGATG : 1240 vulgar: gi|805795905|ref|XP_012143137.1| 363 424 . LHQN01028732.1 1507 1239 - 102 M 49 147 5 0 2 I 0 81 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1240 1507 102 - . gene_id 3 ; sequence gi|805795905|ref|XP_012143137.1| ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 1361 1507 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1361 1507 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 1359 1360 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 1276 1360 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 1276 1277 . - . intron_id 0 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 1240 1275 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1240 1275 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1240 1507 102 - . alignment_id 3 ; Query gi|805795905|ref|XP_012143137.1| ; Align 1508 364 147 ; Align 1276 413 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795896|ref|XP_012143135.1| PREDICTED: uncharacterized protein LOC100875381 [Megachile rotundata] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 145 Query range: 164 -> 245 Target range: 5663 -> 5420 165 : ValLeuPheValSerIleProLeuSerSerProAlaLeuAspPheIleAlaProLeuAsnGl : 185 !.!||||||:!!!!!:!:|||!!! !|||||| !||||||.!!:!! !||||||||||| AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGl 5663 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGA : 5603 186 : uThrArgThrLysLeuProLeuPheLysLeuAsnTyrIleValAspMetArgAspHisPheT : 206 |||||||.!!::!||| !:!!!:! ! ! !!|||.!!|||||| ! ! ! :!! !| uThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgT 5602 : GACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTT : 5540 207 : yrIleValTyrLeuHisSerAlaTrpCysSerLeuIleIleValLeuIleValThrThrMet : 226 ||:!::!! !|||! ! ! !:!!!!::!!:!!! !:!! !! !.!! yrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCys 5539 : ACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGC : 5480 227 : AspSerLeuTyrMetValIleIleHisTyrAlaCysGlyLeuPheAlaLeuCysGly : 245 |||:!! !|||:!! ! !:!:!!.:!!||||||||||||!!.|||:!!...||| AspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5479 : GATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5421 vulgar: gi|805795896|ref|XP_012143135.1| 164 245 . LHQN01028732.1 5663 5420 - 145 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5663 145 - . gene_id 1 ; sequence gi|805795896|ref|XP_012143135.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5663 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5663 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5663 145 - . alignment_id 1 ; Query gi|805795896|ref|XP_012143135.1| ; Align 5664 165 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: LHQN01028838.1 Habropoda laboriosa contig28838, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 260 -> 298 Target range: 644 -> 530 261 : SerPheIleSerArgIleGluAlaIleMetAsnGluIleCysPheMetGluLeuPheLysCysT : 282 ||||||||||||||||||||||||!!:||||||:!! ||||||:!!|||||| !:!|||! SerPheIleSerArgIleGluAlaMetMetAsnLysAlaCysPheLeuGluLeuThrArgCysM 644 : AGCTTCATATCGCGCATAGAGGCAATGATGAACAAAGCGTGTTTCCTGGAGTTAACGAGGTGCA : 581 283 : hrPheSerIleCysLeuLeuGlyPheAsnIleIleLeuCysAsnLysIle : 298 !.!.:!!:!!||| !||||||!:! !!|||.!!:!! :!! !||| etIleAlaValCysAlaLeuGlyTyrTyrIlePheMetValAspValIle 580 : TGATAGCTGTATGCGCACTTGGATATTATATATTCATGGTAGATGTAATT : 531 vulgar: gi|805766376|ref|XP_012135244.1| 260 298 . LHQN01028838.1 644 530 - 113 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028838.1 exonerate:protein2genome:local gene 531 644 113 - . gene_id 1 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation . LHQN01028838.1 exonerate:protein2genome:local cds 531 644 . - . LHQN01028838.1 exonerate:protein2genome:local exon 531 644 . - . insertions 0 ; deletions 0 LHQN01028838.1 exonerate:protein2genome:local similarity 531 644 113 - . alignment_id 1 ; Query gi|805766376|ref|XP_012135244.1| ; Align 645 261 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 315 Query range: 1 -> 165 Target range: 381 -> 867 2 : HisAspLysProIleThrGluGlnThrAspProGluIleLeuSerAspTyrSerLeuGlnLeuA : 23 :!!|||||| !!:!:..! !:!!! !:!! ! ! !||||||||||||||||||! !| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpA 382 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGA : 445 24 : snArgTrpLeuLeuLysSerIleGlyAlaTrpProLysSerSerSerThrThrLysThrGluLe : 44 |||||||| !:!!||||||||||||.!!||||||:!!! !|||||| !!. !||| snArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSer------AsnLeuGluAr 446 : ATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCG------AACCTCGAGAG : 502 45 : uThrValSerLeuIleLeuThrValIleGlyTyrThrThrIleLeuIleThrValIleProAla : 65 !!.!:!!|||! !||||||!.!|||||| !!||||||.!!||||||.!!:!!:!!||||||..! gAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCys 503 : AAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGT : 565 66 : IleLeuGlnLeuIleLeuGlyAspIleAspLeuHisThrLysValValLeuValGlyProMetS : 87 |||!!.|||!!:|||! ! ! !!!!:!!||||||||| !:!!:!!||| !!:!!| SerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuS 566 : TCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGA : 631 88 : erHisTrpCysLeuGlyGlyIleGlyTyrThrMetLeuLeuMetHisAspGluGluIleLysTr : 108 |||||||| !!! !! !|||.!!|||||||||||||||:!!!.. !:!! ||| ! erHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHi 632 : GCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCA : 694 109 : pCysValGluArgValLysAsnAspTrpArgSerIleMetAsnProGluMetGlnGlnThrMet : 129 ! !|||.!.!.!:!!:!!!.!|||||||||!!!! ... ||| ::::::...||| sPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMet 695 : CTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATG : 757 130 : IleLysAsnAlaLysLeuSerArgTyrValValSerLeuCysAlaIleLeuMetGlnSerAlaV : 151 :!:||| !!||||||!!!|||||||||!.!!.!! !!!!|||||||||!!!!!:!!..!!!.!: LeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyI 758 : TTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACACGGTGGTA : 823 152 : alLeuGlyPheGlyValGluLysAlaLeuSerThrGlnValIle : 165 !!||||||!:! !!||| !! !|||! !!!!|||..!|||:!! leLeuGlyTyrCysValMetThrAlaSerThrThrMetValVal 824 : TACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTC : 867 vulgar: gi|805766376|ref|XP_012135244.1| 1 165 . LHQN01028951.1 381 867 + 315 M 37 111 G 2 0 M 125 375 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 382 867 315 + . gene_id 1 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 382 867 . + . LHQN01028951.1 exonerate:protein2genome:local exon 382 867 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 382 867 315 + . alignment_id 1 ; Query gi|805766376|ref|XP_012135244.1| ; Align 382 2 111 ; Align 493 41 375 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 302 Query range: 0 -> 158 Target range: 375 -> 843 1 : MetAsnSerSerAspLysLeuIleThrAsnThrArgTyrLeuGlnAspTyrGluTyrSerIleG : 22 |||!:!!:!..! ! ! :!!:!!|||.!.! !!.! ! ..! !!!:||||||:!!| MetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuG 376 : ATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCC : 439 23 : lnLeuAsnArgTrpPheLeuLysProIleGlyValTrpProArgAlaSerThrAlaSerIleAl : 43 ||! !||||||||| :!!||| !||||||..!||||||!:! !||| |||! ! lnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSer------SerAsnLe 440 : AGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCG------TCGAACCT : 496 44 : aGluLysIleLeuAlaIleValLeuAsnValAlaCysHisValLeuIleIlePheThrPheVal : 64 !|||!:!! !:!!:!! !:!!||||||||| !|||:!!..! !|||:!!|||:!!.!.:!! uGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIle 497 : CGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATC : 559 65 : ProCysLeuLeuPheIleLeuPheGluGluAlaSerPheGlnThrArgIleLysAlaIleGlyP : 86 ||||||! !||| !:!!:!!.!.|||:!!!.!!!!||| ! |||!:!:!:||| !:!!||| ProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyS 560 : CCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTT : 625 87 : roMetSerHisTrpIleMetGlyGluLeuAsnTyrCysPheLeuThrMetArgGlyGlnAspIl : 107 !!:!!|||||||||:!:.!. !! :!!!:!||| !.!.||| !:!!||| !!:!! !|| erLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIl 626 : CGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCAT : 688 108 : eLeuHisCysIleGluHisIleGlySerAspTrpGlnThrValLysArgAlaSerAspArgGlu : 128 |! !|||! !:!!.!.|||!!:! !!!!||||||::!|||..! ||| ... :::||| eHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGlu 689 : ACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaa : 751 129 : ValMetLeuLysAsnValLysPheGlyArgLeuIleAlaCysLeuAlaAlaValGlyMetAsnV : 150 |||||||||||| !!!.!||||||.!!|||! ! ||| !!!!..!|||:!! !!!::!!! ValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisG 752 : gtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACACG : 817 151 : alGlyValPheSerTyrIleValIle : 158 !|||:!!.!!.!!||| !|||!!: lyGlyIleLeuGlyTyrCysValMet 818 : GTGGTATACTTGGATATTGTGTTATG : 843 vulgar: gi|805766364|ref|XP_012135240.1| 0 158 . LHQN01028951.1 375 843 + 302 M 38 114 G 2 0 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 376 843 302 + . gene_id 1 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 376 843 . + . LHQN01028951.1 exonerate:protein2genome:local exon 376 843 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 376 843 302 + . alignment_id 1 ; Query gi|805766364|ref|XP_012135240.1| ; Align 376 1 114 ; Align 490 41 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 168 Query range: 332 -> 389 Target range: 212 -> 35 333 : GluGlnCysLysLysValGlyGluLysAlaTyrSerValGluTrpTyrArgLeuSerHisArgT : 354 |||:!! !! |||||||||! !|||!.!|||! !..!||||||||||||||||||!!.!:!| GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 355 : hrAlaLeuSerLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy : 375 ||||||||.!!!!!|||||||||||||||||||||||||||||||||||||||||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 376 : sIleIle<-><->ArgIleSerLeuAlaThrPheGlyAspValSerIle : 389 |.!!:!! ! ! ! !:!!|||||||||||||||||||||||| sPheValTyr***ThrSerPheValAlaThrPheGlyAspValSerIle 85 : ATTCGTATACTGAACATCGTTTGTCGCAACATTTGGCGATGTGagtatt : 36 vulgar: gi|805766364|ref|XP_012135240.1| 332 389 . LHQN01029187.1 212 35 - 168 M 45 135 G 0 6 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 36 212 168 - . gene_id 1 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 36 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 36 212 . - . insertions 6 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 36 212 168 - . alignment_id 1 ; Query gi|805766364|ref|XP_012135240.1| ; Align 213 333 135 ; Align 72 378 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 295 -> 338 Target range: 203 -> 74 296 : AsnLysIleGlyGluAlaIleTyrMetSerAsnTrpTyrTyrLeuAlaAspLysAspIleHisA : 317 !.!|||:!!|||! ! !:!:||||||!!!.!.|||||| |||:!!.!.||| ! !! !. ThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuG 203 : ACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCG : 140 318 : snLeuMetMetIleIleSerArgSerCysValGluThrLysIleThrAlaGlyLysIleValHi : 338 .!!!!:!:|||||||||||||||||| !!:!!! !! !||||||||||||||||||.!!|||:! lyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheValTy 139 : GTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTATA : 77 339 : s : 338 ! r 76 : C : 75 vulgar: gi|805766376|ref|XP_012135244.1| 295 338 . LHQN01029187.1 203 74 - 107 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 75 203 107 - . gene_id 1 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 75 203 . - . LHQN01029187.1 exonerate:protein2genome:local exon 75 203 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 75 203 107 - . alignment_id 1 ; Query gi|805766376|ref|XP_012135244.1| ; Align 204 296 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766364|ref|XP_012135240.1| PREDICTED: uncharacterized protein LOC100875960 [Megachile rotundata] Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 173 Query range: 333 -> 389 Target range: 112 -> 286 334 : GlnCysLysLysValGlyGluLysAlaTyrSerValGluTrpTyrArgLeuSerHisArgThrA : 355 :!! !! |||||||||! !|||!.!|||! !..!||||||||||||||||||!!.!:!|||| GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrA 113 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTG : 176 356 : laLeuSerLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysIl : 376 |||||.!!||||||||||||||||||||||||||||||||||||||||||||||||||||||.! laLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPh 177 : CTCTCGGTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATT : 239 377 : eIle<-><->ArgIleSerLeuAlaThrPheGlyAspValSerIle : 389 !:!! ! ! |||:!!|||||||||||||||||||||||| eValTyr***ThrSerSerValAlaThrPheGlyAspValSerIle 240 : CGTATACTGAACATCGTCTGTCGCAACATTTGGCGATGTGagtatt : 286 vulgar: gi|805766364|ref|XP_012135240.1| 333 389 . LHQN01048470.1 112 286 + 173 M 44 132 G 0 6 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 113 286 173 + . gene_id 1 ; sequence gi|805766364|ref|XP_012135240.1| ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 113 286 . + . LHQN01048470.1 exonerate:protein2genome:local exon 113 286 . + . insertions 6 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 113 286 173 + . alignment_id 1 ; Query gi|805766364|ref|XP_012135240.1| ; Align 113 334 132 ; Align 251 378 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805766376|ref|XP_012135244.1| PREDICTED: uncharacterized protein LOC100876531 [Megachile rotundata] Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 295 -> 338 Target range: 118 -> 247 296 : AsnLysIleGlyGluAlaIleTyrMetSerAsnTrpTyrTyrLeuAlaAspLysAspIleHisA : 317 !.!|||:!!|||! ! !:!:||||||!!!.!.|||||| |||:!!.!.||| ! !! !. ThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuG 119 : ACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCG : 182 318 : snLeuMetMetIleIleSerArgSerCysValGluThrLysIleThrAlaGlyLysIleValHi : 338 .!|||:!:|||||||||||||||||| !!:!!! !! !||||||||||||||||||.!!|||:! lyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheValTy 183 : GTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTATA : 245 339 : s : 338 ! r 246 : C : 247 vulgar: gi|805766376|ref|XP_012135244.1| 295 338 . LHQN01048470.1 118 247 + 111 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 119 247 111 + . gene_id 1 ; sequence gi|805766376|ref|XP_012135244.1| ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 119 247 . + . LHQN01048470.1 exonerate:protein2genome:local exon 119 247 . + . insertions 0 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 119 247 111 + . alignment_id 1 ; Query gi|805766376|ref|XP_012135244.1| ; Align 119 296 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805793799|ref|XP_012142565.1| PREDICTED: uncharacterized protein LOC105662692 [Megachile rotundata] Target: LHQN01049761.1 Habropoda laboriosa contig49761, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 215 -> 315 Target range: 207 -> 507 216 : GlyTyrAlaLysAlaIleAspAspPheTyrTyrGlyIleLeuPheIleValValGlyMetThrI : 237 .!!!:!!.!|||! !|||!!: ! !:!! !! ! !||||||! ! !:!!|||:!!..!| SerPheValLysGluIleGluArgGlyHisAspThrTyrLeuPheThrCysLeuGlyLeuValI 208 : AGCTTTGTAAAGGAAATTGAACGCGGCCATGACACGTACCTTTTCACCTGCTTAGGCTTGGTGA : 271 238 : leGlyAlaPheSerSerThrLeuPheTrpValSerSerLeuAsnPheIleLeuThrAspAspSe : 258 || !..!||||||! !||||||.!! !|||||| ||| ::: !||| !!! leLeuCysPheSerIleThrLeuIleLysValSerPheLeuPheProLeuSerTyrAspTyrIl 272 : TTCTATGCTTCAGTATTACTCTGATCAAGGTGAGcttccttttccctctttcctaCGACTACAT : 334 259 : rAsnLeuSerAspAspSerSerLeuLeuTyrIlePheSerLysGlnLeuSerLysMetLysPro : 279 !:::! !!!! !!!!... ... :::|||:!!!!.|||||||||! ! ! ! ! eSerArgCysLeuIleCysGlyHisPheSerLeuPheAlaAsnGlnLeuSerThrSerAspPhe 335 : TTCGCGTTGTTTAATCTGTGgacatttttcactgtttGCAAATCAGCTGAGTACGTCGGATTTC : 397 280 : CysAlaGlnPheTyrGluTyrIleValPheLeuThrIleGlnLeuLeuHisIlePhePheLeuA : 301 ! !.!.||||||..!||| ! !||| ! ! !||||||:!!|||:!:||| !!:!! AspIleAspPheTyrArgTyrCysSerPheThrLeuCysGlnLeuMetHisLeuPheValIleM 398 : GACATAGACTTCTACAGATACTGCAGTTTTACGTTGTGTCAACTGATGCACCTGTTCGTCATCA : 463 302 : laIleGlnGlyGlnPheMetIleAsnArgThrAspIleValTyr : 315 !:!!||||||||||||:!!:!::!! ! !|||! !:!!:!! etLeuGlnGlyGlnPheValLeuAspSerCysAspArgIleHis 464 : TGCTTCAGGGACAGTTCGTGCTGGATTCGTGCGACAGAATTCAC : 507 vulgar: gi|805793799|ref|XP_012142565.1| 215 315 . LHQN01049761.1 207 507 + 114 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049761.1 exonerate:protein2genome:local gene 208 507 114 + . gene_id 1 ; sequence gi|805793799|ref|XP_012142565.1| ; gene_orientation . LHQN01049761.1 exonerate:protein2genome:local cds 208 507 . + . LHQN01049761.1 exonerate:protein2genome:local exon 208 507 . + . insertions 0 ; deletions 0 LHQN01049761.1 exonerate:protein2genome:local similarity 208 507 114 + . alignment_id 1 ; Query gi|805793799|ref|XP_012142565.1| ; Align 208 216 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805795870|ref|XP_012143126.1| PREDICTED: uncharacterized protein LOC100881791 [Megachile rotundata] Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 155 -> 199 Target range: 1339 -> 1207 156 : LeuTyrThrGlyLeuIleLeuHisValCysCysGlnPheGluIleLeuGluHisArgPheLy : 176 |||!:!!:!||||||:!::!!|||:!!! !||||||||||||||||||:!!||||||.!.|| LeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLy 1339 : CTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAA : 1279 177 : sThrLeuAsnGlyLysAspThrArgValValAsnGlnCysAlaSerHisHisAsnLeuIleT : 197 |!:!:!!!!. ! ! ! ! !!.!!!.|||||||||! !|||||| !!! !|||| sSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrArgIleT 1278 : GAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGCATAT : 1216 198 : yrLysPhe : 199 |||||||| yrLysPhe 1215 : ACAAGTTT : 1208 vulgar: gi|805795870|ref|XP_012143126.1| 155 199 . LHQN01050085.1 1339 1207 - 127 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 1208 1339 127 - . gene_id 1 ; sequence gi|805795870|ref|XP_012143126.1| ; gene_orientation . LHQN01050085.1 exonerate:protein2genome:local cds 1208 1339 . - . LHQN01050085.1 exonerate:protein2genome:local exon 1208 1339 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 1208 1339 127 - . alignment_id 1 ; Query gi|805795870|ref|XP_012143126.1| ; Align 1340 156 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805798911|ref|XP_012143985.1| PREDICTED: uncharacterized protein LOC100876205 [Megachile rotundata] Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 347 -> 408 Target range: 833 -> 1185 348 : IleGlyTyrSerLeuTyrSerCysSerTrpTyrSerLeuProAlaAsnValAlaLysAsnIl : 368 |||||| !!!!! !|||..!! ! !||||||..!|||! !:!!!.!! !::!:!! !:! IleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSerGlnLeuLe 834 : ATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAGCCAACTTCT : 894 369 : eValLeuValIleLeuArgAlaGlnIleProValHisLeuThrAlaGlyLysPhePheValV : 389 !:!!! !||||||||||||:!!|||! ! !! !..||| ||||||||| : uIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysPheSerSerL 895 : AATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaattttcaagtc : 957 390 : alAsnLeuGluThrPheMetSer >>>> Target Intron 1 >>>> IleLeuLysT : 400 :!::!||||||!:!|||! !:!! 169 bp |||:!!|||. euSerLeuGluSerPheThrAla++ ++IleMetLysV 958 : tCTCCTTGGAAAGCTTTACGGCCgt.........................agATCATGAAAG : 1159 401 : hrSerMetSerTyrLeuSerIleLeu : 408 .!||| ||||||:!!|||:!!||| alSerAlaSerTyrIleSerValLeu 1160 : TCTCAGCATCATATATATCAGTACTT : 1185 vulgar: gi|805798911|ref|XP_012143985.1| 347 408 . LHQN01050112.1 833 1185 + 103 M 49 147 5 0 2 I 0 165 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 834 1185 103 + . gene_id 1 ; sequence gi|805798911|ref|XP_012143985.1| ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 834 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 834 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1185 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1185 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 834 1185 103 + . alignment_id 1 ; Query gi|805798911|ref|XP_012143985.1| ; Align 834 348 147 ; Align 1150 397 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: KQ414588.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold11, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 326 -> 384 Target range: 776544 -> 776796 327 : TyrGluGlyLeuTrpTyrAsnAlaAlaProLysAlaGlnAlaLeuTyrValLeuAlaL : 346 |||...!.!||||||||||||::!! ! !!:!.!!|||:!!|||!:!|||||||||| TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaL 776545 : TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGT : 776602 347 : euArgAlaSerAlaAlaAlaProGlnIleThrAlaGlyGlyGlnIleProMetAsnLe : 365 ||||| !!!! !:!!||||||||||||||||||||||||! !||| !!|||||||| euArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLe 776603 : TAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTT : 776659 366 : uGluThrPheAlaVal >>>> Target Intron 1 >>>> IleIleLysAlaS : 375 |:!!!:!|||:!!! ! 78 bp |||:!!|||.!!| uGlnSerPheSerGlu++ ++IleValLysThrS 776660 : GCAAAGTTTCTCAGAGgt.........................agATTGTAAAGACGT : 776767 376 : erValSerTyrPheThrMetLeuLysSer : 384 |||||||||||!:!! !:!:||||||||| erValSerTyrTyrMetValLeuLysSer 776768 : CTGTCTCGTACTACATGGTACTGAAATCC : 776796 vulgar: gi|383857245|ref|XP_003704115.1| 326 384 . KQ414588.1 776544 776796 + 175 M 44 132 5 0 2 I 0 74 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414588.1 exonerate:protein2genome:local gene 776545 776796 175 + . gene_id 1 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation + KQ414588.1 exonerate:protein2genome:local cds 776545 776676 . + . KQ414588.1 exonerate:protein2genome:local exon 776545 776676 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local splice5 776677 776678 . + . intron_id 1 ; splice_site "GT" KQ414588.1 exonerate:protein2genome:local intron 776677 776754 . + . intron_id 1 KQ414588.1 exonerate:protein2genome:local splice3 776753 776754 . + . intron_id 0 ; splice_site "AG" KQ414588.1 exonerate:protein2genome:local cds 776755 776796 . + . KQ414588.1 exonerate:protein2genome:local exon 776755 776796 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local similarity 776545 776796 175 + . alignment_id 1 ; Query gi|383857245|ref|XP_003704115.1| ; Align 776545 327 132 ; Align 776755 371 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_09696 [mRNA] [translate_table: standard] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 309 -> 370 Target range: 204742 -> 204925 310 : LeuGluSerGlnSerAlaGlyIleSerPheAlaAlaTyrAspSerThrTrpTyrProT : 329 |||...||| ||| ...:::|||.!. !:!! ! !!: ! ! ! !!| LeuSerSerPheSerIleSerLeuSerIleLysSerGluGluValTyrValAlaAlaT 204743 : TTgtcttcattttcaatttctttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGT : 204800 330 : yrAspSerThrTrpTyrArgSerArgGlyHisArgAlaArgAspLeuAlaLeuIleIl : 348 ||!!:!!! !|||! !.!! !!:!..!:!!!:!|||!:!..!||| !||||||!! yrGluCysGluTrpLeuAsnLeuLysSerAsnLysAlaLysSerLeuIleLeuIleMe 204801 : ACGAATGCGAATGGTTGAATTTGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCAT : 204857 349 : eHisArgGlyAsnSerProTyrCysIleThrAlaGlyLysPheMetProMetAsnLeu : 367 : |||!.!.!.!!!||| !|||:!!||||||||||||......||||||!..:!! tAlaArgAlaGlnArgProLeuCysLeuThrAlaGlyLysLeuPheProMetThrMet 204858 : GGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGcaggaaaattatttcctatGACGATG : 204914 368 : LeuThrPhe : 370 ||||||||| LeuThrPhe 204915 : CTAACGTTT : 204925 vulgar: Lalb_09696 309 370 . KQ414617.1 204742 204925 + 110 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204743 204925 110 + . gene_id 1 ; sequence Lalb_09696 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204743 204925 . + . KQ414617.1 exonerate:protein2genome:local exon 204743 204925 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204743 204925 110 + . alignment_id 1 ; Query Lalb_09696 ; Align 204743 310 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 315 -> 387 Target range: 204716 -> 204934 316 : IleTyrTyrLeuPheIlePheGluThrCysArgLysPheProSerHisLeuArgLeuC : 335 |||:::::: |||:::::: |||||| ||| |||! ! IlePhePheSerPheLeuTyrThrThrCysLeuHisPheGlnPheLeuCysArg***S 204717 : attttcttttctttcctctatACTACTTgtcttcattttcaatttctttgtCGATAAA : 204774 336 : ysSerLys--IleGlyProAlaAlaTyrGluIleAspTrpTyrAsnLeuProTyrLys : 353 !! !!|||##:!! ! !|||||||||||| !!!:|||! |||||| !! !!. erProLys##ValTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsn 204775 : GTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAAC : 204830 354 : LysAlaHisAspLeuIleLeuLeuSerValValSerAsnTyrProProLysLeuThrA : 373 |||||| ! ..!|||||||||:!!! !!.! !:!!.!. |||! ! ||||||| LysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuThrA 204831 : AAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCG : 204890 374 : laGlyLysIlePheThrLeuSerLeuAsnThrPheSerSerVal : 387 ||||||||:::||| ::!!!!:!! ||||||!!!!:!||| laGlyLysLeuPheProMetThrMetLeuThrPheCysAsnVal 204891 : caggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: Lalb_14618 315 387 . KQ414617.1 204716 204934 + 106 M 22 66 F 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204717 204934 106 + . gene_id 1 ; sequence Lalb_14618 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204717 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204717 204934 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414617.1 exonerate:protein2genome:local similarity 204717 204934 106 + . alignment_id 1 ; Query Lalb_14618 ; Align 204717 316 66 ; Align 204785 338 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383848906|ref|XP_003700088.1| PREDICTED: uncharacterized protein LOC100874989 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 862 Query range: 0 -> 370 Target range: 1063134 -> 1061289 1 : MetSerAlaTyrLeuHisLysValTrpAspLeuLeuGluSerMetGlyMetPheTh : 19 .!.!:!||| !!:!!|||::!||| !!:!!||||||! ! |||! !||||| PheAsnAlaAsnIleHisArgValLeuHisIleLeuGluLeuAlaGlyArgPheTh 1063134 : TTCAACGCGAACATTCATCGAGTACTTCATATACTAGAATTGGCTGGAAGGTTCAC : 1063080 20 : rCysThrTrpProValAspArgAsnAlaSerLysTrpLysIleIleLeuArgAsnV : 38 |||||||||||||:!!||| !|||::!|||||| ! :!!:!!:!!!!!||||||| rCysThrTrpProLeuAspSerAsnSerSerLysArgGluValValPheArgAsnV 1063079 : GTGTACCTGGCCGTTAGATTCTAACAGCAGTAAAAGAGAAGTTGTCTTTCGTAACG : 1063023 39 : alHisTrpLeuValAlaValValAsnValLeuIleValIleThrSerLeuIleLeu : 56 ||!..||| ! !!.!!:!!:!!||||||:!!:!!:!!:!:! !|||||||||||| alArgTrpGlyPheThrIleLeuAsnValIleLeuLeuLeuIleSerLeuIleLeu 1063022 : TTCGATGGGGTTTCACGATACTAAACGTGATATTACTACTGATATCCTTGATACTc : 1062969 57 : ThrMetTyrHisTyrLysSerAspIleIleIleMetThrGluAlaIleSerGluMe : 75 ...::::::|||::::::::!|||||| |||::: :::...||||||||||| AlaIlePheHisPheArgAsnAspIleThrIleLeuMetLysThrIleSerGluMe 1062968 : gcgatttttcactttcgaaaCGACATaactattttaatgaaaaccaTCTCCGAGAT : 1062912 76 : tGlyCysLeuIleGluLeuThrLeuAspMetIleLeuCysLysIleHisSerSerG : 94 | !..!|||:!:|||:!! !:!!||||||||||||||||||!!: ! |||:!!| tThrAlaLeuLeuGluValLeuMetAspMetIleLeuCysLysMetLysSerAlaG 1062911 : GACTGCTCTGCTGGAGGTGTTGATGGACATGATTCTCTGCAAAATGAAGAGTGCAC : 1062855 95 : lnIleGln >>>> Target Intron 1 >>>> IleLeuValArgLysValL : 103 ||:!!||| 80 bp :!:|||||| !!||||||| lnLeuGln++ ++ValLeuValGlyLysValL 1062854 : AGCTTCAggt.........................agGTGTTGGTAGGAAAAGTAA : 1062748 104 : ysThrTyrIleAspThrSerAsnGluTyrLysAsnSerValIleGluGlyTyrVal : 121 ||.!!!:!:!! ! ..!:!!|||:!! !!:!!! !!.!:!!|||:!!||||||||| ysAlaPheValLysValAlaAsnLysAsnGluIleLysIleIleGlnGlyTyrVal 1062747 : AGGCGTTTGTAAAAGTGGCAAACAAGAACGAGATTAAGATAATACAAGGATACGTG : 1062694 122 : HisArgTyrLysIleHisPheLeuLeuIleValSerGlnPheValSerThrGlyTh : 140 !!||||||||| ! !||| ! !|||!.!! ! !!:!|||! !||||||! AspArgTyrLysArgPhePheGlyThrIleAlaMetGlyTyrValMetThrGlyIl 1062693 : GATCGATATAAACGATTTTTCGGAACAATAGCAATGGGATACGTAATGACTGGAAT : 1062637 141 : rLeuPheAsnLeuMetAlaLeuTyrThr<->LysGlnLeuProLeuAsnGlyTrpT : 158 ! !|||!:!||| ! !!|||!:!:!! :!!:!!|||||| !:!!|||||| eThrPheSerLeuAlaProLeuPheSerValGlnGluLeuProAlaAspGlyTrpI 1062636 : CACGTTCAGTTTGGCGCCTCTGTTTTCCGTACAAGAATTGCCAGCAGACGGATGGA : 1062580 159 : yrProPheSerThrGluProAspLeuValPheTyrTyrIlePheCysValGluAla : 176 !|||||||||! !:!!||| !|||!:!! ! !:!!!:!! !|||:!!!.! leProPheSerIleLysProLeuGlyValTyrCysLeuValTyrPheValGlnVal 1062579 : TCCCGTTTTCCATTAAACCACTGGGAGTATATTGCCTCGTATACTTTGTGCAGGTT : 1062526 177 : TyrSerIlePheGlnValSerPheSerIlePheSerAspPheValIleIleGlyLe : 195 |||!!!|||.!!|||..!:!!|||!!!||| ! !||||||:!!||| ! !|| TyrCysIleLeuGlnThrAlaPheCysIleSerValAspPheMetIleAlaLeuLe 1062525 : TACTGCATTCTCCAAACAGCGTTCTGCATTAGCGTGGATTTCATGATCGCTCTTCT : 1062469 196 : uIleSerPheIleAlaAlaArgLeuAspIleLeuSerSerGlnMetLysGlnValS : 214 |||||||||| !||||||!:!||||||||||||.!!! !:!!:!!::!:!!!.!! uIleSerPheSerAlaAlaLysLeuAspIleLeuGlyMetLysLeuArgLysAlaA 1062468 : AATCAGCTTCTCCGCGGCTAAATTAGACATACTGGGGATGAAACTGCGAAAAGCGA : 1062412 215 : erAspTyrAspLeuLeuValLysCysValLysGluHisHisGluIleIle{Gl} : 231 :!! !:!!|||:!!||||||!..|||||||||||||||!!.|||||||||{||} snGlyHisAspValLeuValSerCysValLysGluHisGlnGluIleIle{Gl}++ 1062411 : ATGGCCACGACGTGCTGGTAAGCTGTGTCAAAGAACACCAAGAGATAATA{GG}gt : 1062359 232 : >>>> Target Intron 2 >>>> {y}PhePheGluAspThrThrAlaAlaVa : 240 263 bp {|}||| ! ||||||! !! !.!!:!!|| ++{y}PheValGluAspIleLysThrSerVa 1062358 : .........................ag{A}TTTGTGGAGGATATTAAGACATCTGT : 1062071 241 : lArgSerLeuLeuPheLysThrAsnIleThrMetGlyGlyThrValIleSerAlaV : 259 |...:::|||||||||||||||||| !|||||||||.!!.!!||||||!!!!.!. lGluThrLeuLeuPheLysThrAsnAlaThrMetGlySerAlaValIleCysGlyT 1062070 : CGAgactttgttattcaaaacgaACGCCACTATGGGAAGCGCTGTGATATGCGGAA : 1062014 260 : alLeuSerLeuLeuTyr >>>> Target Intron 3 >>>> ValArgAsnG : 268 .!!!! !!|||:!!||| 126 bp :!!!:!|||| hrPheProLeuIleTyr++ --IleGlnAsnG 1062013 : CGTTCCCGTTGATTTACgt.........................ccATTCAGAATC : 1061861 269 : lnSerLeuTyrThrAlaCysGlnTyrPheGlyMetValMetAlaGlyTyrGlyHis : 286 |||||||| ..! ! !!|||!:!.!! !:!!:!!:!::!!|||! !|||!.. lnSerLeuThrValIleSerGlnPheLeuProLeuMetLeuSerGlyCysGlyArg 1061860 : AGTCGCTGACAGTAATCAGTCAGTTTCTTCCTTTGATGCTATCCGGCTGCGGACGA : 1061807 287 : MetTrpIleIleThrTrpProAlaAspAspLeuThrGluSer >>>> Target : 301 :!:!:::!!|||:!!||||||||||||||||||! !|||||| 16 LeuTyrValIleSerTrpProAlaAspAspLeuLysGluSer++ 1061806 : CTATACGTCATCTCCTGGCCAGCAGATGATTTGAAAGAGAGCgt............ : 1061760 302 : Intron 4 >>>> SerLeuLysPheAlaLysSerLeuHisAspIleProTrpPr : 314 4 bp |||:!!! !||||||||||||||| |||! !|||||| ++SerIleThrPheAlaLysSerLeuIleAspSerProTrpIl 1061759 : .............agagTATAACGTTCGCGAAGTCTCTGATAGACAGTCCGTGGAT : 1061559 315 : oGlyLysSerArgArgMetLysSerThrValLeuIleMetMetLeuArgCysGlnL : 333 !|||||| !!|||!:!|||! !!:!! !|||:!!|||||||||! !||| !!|||! eGlyLysProArgLysMetThrAsnIleValIleIleMetMetGlnArgSerGlnA 1061558 : AGGGAAACCACGAAAAATGACGAACATTGTGATAATTATGATGCAAAGAAGCCAAA : 1061502 334 : ysProPheLeuIleThrMetGlyGlyLeuLeuProValLeuSerLeuGlnTyrPhe : 351 :! !!!.||||||||||||||||||:!!||||||!.!:!!||||||:!!|||!:! rgIleLeuLeuIleThrMetGlyGlyIleLeuProAlaIleSerLeuGluTyrTyr 1061501 : GGATATTACTCATTACCATGGGTGGTATACTTCCTGCTATTTCCTTGGAATATTAT : 1061448 352 : SerGln >>>> Target Intron 5 >>>> PheLeuThrAsnValPheSer : 360 :!!.!. 99 bp |||||||||!..||| !||| AlaAsn++ ++PheLeuThrThrValGlySer 1061447 : GCAAACgt.........................agTTCCTAACTACAGTAGGCTCC : 1061322 361 : TyrPheMetAlaMetArgSerMetLeuGlu : 370 ||||||||||||||||||!!!|||:!!||| TyrPheMetAlaMetArgThrMetIleGlu 1061321 : TACTTCATGGCAATGAGAACCATGATTGAG : 1061290 vulgar: gi|383848906|ref|XP_003700088.1| 0 370 . KQ414618.1 1063134 1061289 - 862 M 96 288 5 0 2 I 0 76 3 0 2 M 53 159 G 0 3 M 81 243 S 0 2 5 0 2 I 0 259 3 0 2 S 1 1 M 33 99 5 0 2 I 0 122 3 0 2 M 36 108 5 0 2 I 0 160 3 0 2 M 53 159 5 0 2 I 0 95 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1061290 1063134 862 - . gene_id 1 ; sequence gi|383848906|ref|XP_003700088.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1062847 1063134 . - . KQ414618.1 exonerate:protein2genome:local exon 1062847 1063134 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1062845 1062846 . - . intron_id 1 ; splice_site "gt" KQ414618.1 exonerate:protein2genome:local intron 1062767 1062846 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1062767 1062768 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1062360 1062766 . - . KQ414618.1 exonerate:protein2genome:local exon 1062360 1062766 . - . insertions 3 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1062358 1062359 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1062097 1062359 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1062097 1062098 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1061997 1062096 . - . KQ414618.1 exonerate:protein2genome:local exon 1061997 1062096 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1061995 1061996 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1061871 1061996 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1061871 1061872 . - . intron_id 2 ; splice_site "CC" KQ414618.1 exonerate:protein2genome:local cds 1061763 1061870 . - . KQ414618.1 exonerate:protein2genome:local exon 1061763 1061870 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1061761 1061762 . - . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1061599 1061762 . - . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 1061599 1061600 . - . intron_id 3 ; splice_site "ag" KQ414618.1 exonerate:protein2genome:local cds 1061440 1061598 . - . KQ414618.1 exonerate:protein2genome:local exon 1061440 1061598 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1061438 1061439 . - . intron_id 5 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1061341 1061439 . - . intron_id 5 KQ414618.1 exonerate:protein2genome:local splice3 1061341 1061342 . - . intron_id 4 ; splice_site "aG" KQ414618.1 exonerate:protein2genome:local cds 1061290 1061340 . - . KQ414618.1 exonerate:protein2genome:local exon 1061290 1061340 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1061290 1063134 862 - . alignment_id 1 ; Query gi|383848906|ref|XP_003700088.1| ; Align 1063135 1 288 ; Align 1062767 97 159 ; Align 1062605 150 243 ; Align 1062096 232 99 ; Align 1061871 265 108 ; Align 1061599 301 159 ; Align 1061341 354 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383848906|ref|XP_003700088.1| PREDICTED: uncharacterized protein LOC100874989 [Megachile rotundata] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 143 Query range: 94 -> 226 Target range: 1029179 -> 1028780 95 : IleGlnIleLeuValArgLysValLysThrTyrIleAspThrSerAsnGluTyrLy : 113 :!:|||! !|||:!!..!:!!:!!|||! !! ! !!!:|||:!!!!. !|||:! LeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGl 1029179 : TTGCAGAAACTAATCGAAGAAATGAAGATTTGCTGTGAAACAGCGAAACCATACGA : 1029125 114 : sAsnSerValIleGluGlyTyrValHisArgTyrLysIleHisPheLeuLeuIleV : 132 !!....!|||.!!:!! !!|||||| !!!:!|||...:!! !!:!:!! ! ! uArgAspValPheGlnArgTyrValAspLysTyrSerLeuPheTyrValThrCysS 1029124 : AAGAGACGTCTTTCAACGATACGTCGATAAATACTCTTTATTTTACGTAACATGTT : 1029068 133 : alSerGlnPheValSerThrGlyThrLeuPheAsnLeu<->MetAlaLeuTyrThr : 149 !||| !||| !! !|||!.!..!:!!.!. !||| ! !:!! :!! erSerTrpPheTyrLeuThrAlaValIleMetValLeuGlySerArgIleIleSer 1029067 : CGTCGTGGTTTTACTTAACAGCAGTTATTATGGTTCTGGGAAGTCGGATTATATCT : 1029014 150 : LysGlnLeuProLeuAsnGlyTrpTyrProPheSerThrGluProAspLeuValPh : 168 ! ! !!!||| !|||!.! ||||||||| !!..!.!. !!!:! !:!! AspProPheProThrAsnAlaValTyrProPheProValAsnPheGluProLeuAr 1029013 : GATCCTTTTCCAACCAACGCCGTATATCCATTCCCTGTTAACTTTGAACCCTTGAG : 1028957 169 : eTyrTyrIlePheCysValGluAlaTyrSerIlePheGlnValSerPheSerIleP : 187 ! !|||||| !:!!:!!!:! ! !.!.||| !:!! !! ! gSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisThrS 1028956 : AAGTATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACACTA : 1028900 188 : heSerAspPheValIleIleGlyLeuIleSerPheIleAlaAlaArgLeuAspIle : 205 !! !:!! ! :!!! ! ! !|||:!! !||| !|||||||||!!!!!:||| erMetAsnValLeuThrAlaLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIle 1028899 : GTATGAATGTGCTAACTGCATTGTTATTACTATTTGCTGCAGCTCGTTTCGAGATA : 1028846 206 : LeuSerSerGlnMetLysGlnValSerAspTyrAspLeuLeuValLysCysValLy : 224 |||! !! !:!!:!!!:!.!.||||||||| !!!: !|||:!!||||||:!!|| LeuMetMetGluLeuArgAsnValSerAspIleGluThrLeuIleLysCysMetLy 1028845 : CTGATGATGGAGCTGAGGAATGTCAGTGACATTGAAACACTGATTAAATGTATGAA : 1028789 225 : sGluHis : 226 |:!!:!! sLysTyr 1028788 : AAAGTAT : 1028781 vulgar: gi|383848906|ref|XP_003700088.1| 94 226 . KQ414618.1 1029179 1028780 - 143 M 50 150 G 0 3 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028781 1029179 143 - . gene_id 2 ; sequence gi|383848906|ref|XP_003700088.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028781 1029179 . - . KQ414618.1 exonerate:protein2genome:local exon 1028781 1029179 . - . insertions 3 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028781 1029179 143 - . alignment_id 2 ; Query gi|383848906|ref|XP_003700088.1| ; Align 1029180 95 150 ; Align 1029027 145 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_02845 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 660 Query range: 5 -> 354 Target range: 1030002 -> 1028045 6 : ThrProLysLysAlaIleThrPheThrLysTyrSerValIleLeuCysCysGlyTr : 24 !:!|||:!!!:!||||||:!!.!!..!:!! !! !..! !!!! !||| !!|| SerProGluArgAlaIleSerLeuValGlnValIleThrAlaPheThrCysCysTr 1030002 : AGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGCTTTTACCTGCTGTTG : 1029948 25 : pProLeuProSerSerAlaProLysSerHisPheTyrPheTyrValIleAlaLysV : 43 |||||||||||||!!!||| !!||||||! ! ! !:! !||| !!:! pProLeuProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuArgS 1029947 : GCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGAGAT : 1029891 44 : alLeuIleAlaLeuSerAsnIleSerValIleLeuProAlaPheTrpSerLeuLeu : 61 !!!!:!: !|||!:! :!! !:!!.!!|||||| !!!.!:::!!|||! ! erPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHis 1029890 : CTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCAC : 1029837 62 : PheTyrIleHisAspProValArgThrGlyLysThrPheGlyLeuLeuThrAlaMe : 80 ! :!! !:!!||| !!! !!.!..!!.!|||.!! ! !!||| ! !|||:: ValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLe 1029836 : GTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCct : 1029780 81 : tCysGlnThrIleAlaTyrIleIleValCysSerPheGlnHisAspHisTyrGln : 99 : ||| ... !.!!||||||! ! !|||:!!||||||!:!||| uValGlnIlePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGln+ 1029779 : cgtgcaaatatttttccagacTTTCGTTTGCATCGGCCAATACGATCATTTTCAGg : 1029723 100 : >>>> Target Intron 1 >>>> ArgLeuIleGluGluMetThrAspTyrL : 108 550 bp !:!|||||||||||||||! ! !! !! + ++LysLeuIleGluGluMetLysIleCysC 1029722 : t.........................agAAACTAATCGAAGAAATGAAGATTTGCT : 1029146 109 : euGluLysAlaLysLeuTyrGluMetValIlePheGlnArgTyrLeuAspThrTyr : 126 !|||! !||||||! !||||||! ! !:!!||||||||||||:!!|||! !||| ysGluThrAlaLysProTyrGluArgAspValPheGlnArgTyrValAspLysTyr 1029145 : GTGAAACAGCGAAACCATACGAAAGAGACGTCTTTCAACGATACGTCGATAAATAC : 1029092 127 : SerThrPheLeuGlyIleThrThrIleSerPheTyrIleAlaAlaGlyValIleVa : 145 ||| !|||! !! !! ! !:!! !!!||||||:!!.!!|||! !:!!!!:|| SerLeuPheTyrValThrCysSerSerTrpPheTyrLeuThrAlaValIleMetVa 1029091 : TCTTTATTTTACGTAACATGTTCGTCGTGGTTTTACTTAACAGCAGTTATTATGGT : 1029035 146 : lValThrThrLeuPheThrAspGlnProPheProValMetAlaLysTyrProPheA : 164 |:!! !!:!! !.!!! !..!.!.|||||||||..!! ||| !|||||||||! lLeuGlySerArgIleIleSerAspProPheProThrAsnAlaValTyrProPheP 1029034 : TCTGGGAAGTCGGATTATATCTGATCCTTTTCCAACCAACGCCGTATATCCATTCC : 1028978 165 : rgValAspTyrGluProValArgSerThrIlePheLeuAsnAspAlaPheValAla : 182 !|||:!!!:!||||||:!!||||||! !||||||:!!:!!.!.:!!||||||!.! roValAsnPheGluProLeuArgSerIleIlePheMetHisGlnSerPheValGly 1028977 : CTGTTAACTTTGAACCCTTGAGAAGTATCATTTTTATGCACCAATCGTTCGTTGGC : 1028924 183 : LeuGlnAsnValAlaSerValSerLeuAsnThrLeuThrAlaLeuLeuIleLeuPh : 201 :!!||| !!.!||| !..!|||:!!|||..!|||||||||||||||:!!||||| IleGlnCysAlaAlaHisThrSerMetAsnValLeuThrAlaLeuLeuLeuLeuPh 1028923 : ATACAGTGTGCTGCACACACTAGTATGAATGTGCTAACTGCATTGTTATTACTATT : 1028867 202 : eAlaAlaAlaArgTyrAspIleValMetLeuGluLeuGlnSerAlaValThrValA : 220 |||||||||||||!:!!!:|||:!!|||:!!||||||::!!:!!.! ! !:!!! eAlaAlaAlaArgPheGluIleLeuMetMetGluLeuArgAsnValSerAspIleG 1028866 : TGCTGCAGCTCGTTTCGAGATACTGATGATGGAGCTGAGGAATGTCAGTGACATTG : 1028810 221 : laAspLeuLysGluSerMetLysLysTyrHisGluValLys{Ar} >>>> Targ : 234 ! |||! :!!!!!|||||||||||| |||::!{||} luThrLeuIleLysCysMetLysLysTyrSerIleValArg{Ar}++ 1028809 : AAACACTGATTAAATGTATGAAAAAGTATTCGATCGTACGG{AG}gt......... : 1028764 235 : et Intron 2 >>>> {g}CysAlaLeuAspThrIleGlyGlyValGlnTyrVa : 246 205 bp {|}! !||| !|||..!:!! ! !:!!!:! !:! ++{g}TyrAlaThrAspValValThrThrIleArgLeuLe 1028763 : ................ag{G}TACGCAACGGACGTGGTTACCACAATTCGACTTCT : 1028527 247 : lThrLeuIleThrLeuValSerSerSerValIleLeuValAsnAlaGlyLeuAsnL : 265 !..!|||||||||:!!:!!!!!!!!!!!||| ! !||| !||||||:!!|||| uValLeuIleThrValIleThrCysThrValAlaCysValPheAlaGlyIleAsnL 1028526 : GGTTCTGATTACGGTAATCACATGCACTGTGGCGTGTGTATTTGCTGGAATTAACT : 1028470 266 : euIleGly >>>> Target Intron 3 >>>> ArgArgAspPheLeuIleL : 274 |||||||| 73 bp !:!!:! ||| !:!:| euIleGly++ ++LysGlnProPheAlaValL 1028469 : TGATCGGAgt.........................agAAACAACCGTTCGCTGTGA : 1028370 275 : ysCysGlnTyrValPheValAlaThrThrAlaLeuLeuGluValPheSerCysVal : 292 ||..!|||!:!:!! !|||::! !||||||||||||||||||.!!! !||| ! ysAlaGlnPheLeuThrValSerGlyThrAlaLeuLeuGluValLeuMetCysSer 1028369 : AAGCTCAGTTTCTTACTGTGAGTGGAACCGCTTTGCTGGAAGTGCTTATGTGTTCA : 1028316 293 : LeuProAlaAspArgLeuIleGluVal >>>> Target Intron 4 >>>> : 302 ||||||||||||!.!||||||!!::!! 82 bp LeuProAlaAspHisLeuIleAspMet++ ++ 1028315 : CTACCAGCTGACCATTTGATAGATATGgt.........................ag : 1028206 303 : SerThrGlyThrMetArgSerValTyrAspValLysTrpTyrGluArgAspLeuSe : 320 ||| !..!! !|||!:!.!!:!!|||!!: !|||||||||||||||...|||.. SerGluAsnIleMetGlnGlyIleTyrGluSerLysTrpTyrGluArgSerLeuLy 1028205 : AGCGAGAACATAATGCAAGGAATATATGAATCAAAATGGTACGAACGAtctctaaa : 1028150 321 : rValGlnArgThrValTyrHisMetLeuValProGlnLysProValIleIleSerP : 339 .:::|||:::::!..! !! !||||||..!||||||...||||||! !:!!!.!. sIleGlnLysSerThrValLeuMetLeuThrProGlnSerProValThrValLysI 1028149 : aattcaaaagtcTACAGTCCTCATGTTGACTCCTCAATCTCCGGTGACAGTAAAAA : 1028093 340 : heLeuPheValValProGlnLeuSerLeuAsnTyrTyrCysSerVal : 354 !! !! !:!!:!!||| ||||||||||||:::|||||||||||| leLysCysLeuIleProValLeuSerLeuAsnPheTyrCysSerVal 1028092 : TCAAGTGCCTCATTCCAGttctttctttgaatttttactgCTCGGTA : 1028046 vulgar: Lalb_02845 5 354 . KQ414618.1 1030002 1028045 - 660 M 93 279 5 0 2 I 0 546 3 0 2 M 135 405 S 0 2 5 0 2 I 0 201 3 0 2 S 1 1 M 33 99 5 0 2 I 0 69 3 0 2 M 34 102 5 0 2 I 0 78 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028046 1030002 660 - . gene_id 1 ; sequence Lalb_02845 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1029724 1030002 . - . KQ414618.1 exonerate:protein2genome:local exon 1029724 1030002 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1029722 1029723 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1029174 1029723 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1029174 1029175 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028767 1029173 . - . KQ414618.1 exonerate:protein2genome:local exon 1028767 1029173 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1028765 1028766 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1028562 1028766 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1028562 1028563 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028462 1028561 . - . KQ414618.1 exonerate:protein2genome:local exon 1028462 1028561 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1028460 1028461 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1028389 1028461 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1028389 1028390 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028287 1028388 . - . KQ414618.1 exonerate:protein2genome:local exon 1028287 1028388 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1028285 1028286 . - . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1028205 1028286 . - . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 1028205 1028206 . - . intron_id 3 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028046 1028204 . - . KQ414618.1 exonerate:protein2genome:local exon 1028046 1028204 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028046 1030002 660 - . alignment_id 1 ; Query Lalb_02845 ; Align 1030003 6 279 ; Align 1029174 99 405 ; Align 1028561 235 99 ; Align 1028389 268 102 ; Align 1028205 302 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_02845 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 639 Query range: 5 -> 354 Target range: 1039169 -> 1035607 6 : ThrProLysLysAlaIleThrPheThrLysTyrSerValIleLeuCysCysGlyTr : 24 !:!|||:!!!:!||||||:!!.!!..!:!! !! !..! !!!! !||| !!|| SerProGluArgAlaIleSerLeuValGlnValIleThrAlaPheThrCysCysTr 1039169 : AGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGCTTTTACCTGCTGTTG : 1039115 25 : pProLeuProSerSerAlaProLysSerHisPheTyrPheTyrValIleAlaLysV : 43 |||||||||||||!!!||| !!||||||! ! ! !:! !||| !!:! pProLeuProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuArgS 1039114 : GCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGAGAT : 1039058 44 : alLeuIleAlaLeuSerAsnIleSerValIleLeuProAlaPheTrpSerLeuLeu : 61 !!!!:!: !|||!:! :!! !:!!.!!|||||| !!!.!:::!!|||! ! erPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHis 1039057 : CTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCAC : 1039004 62 : PheTyrIleHisAspProValArgThrGlyLysThrPheGlyLeuLeuThrAlaMe : 80 ! :!! !:!!||| !!! !!.!..!!.!|||.!! ! !!||| ! !|||:: ValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLe 1039003 : GTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCTct : 1038947 81 : tCysGlnThrIleAlaTyrIleIleValCysSerPheGlnHisAspHisTyrGln : 99 : ||| ... ...||||||! ! !|||:!!||||||!:!||| uValGlnIlePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGln+ 1038946 : cgtgcaaatatttttccaaactttcgttTGCATCGGTCAATACGATCATTTTCAGg : 1038890 100 : >>>> Target Intron 1 >>>> ArgLeuIleGluGluMetThrAspTyrL : 108 550 bp !:!|||||||||||||||! ! !! !! + ++LysLeuIleGluGluMetLysIleCysC 1038889 : t.........................agAAACTAATCGAAGAAATGAAGATTTGTT : 1038313 109 : euGluLysAlaLysLeuTyrGluMetValIlePheGlnArgTyrLeuAspThrTyr : 126 !|||! !||||||! !||||||! ! !:!!||||||||||||:!!:!!! !:!: ysGluThrAlaLysProTyrGluArgAspValPheGlnArgTyrValAsnLysHis 1038312 : GTGAAACAGCAAAACCATACGAAAGAGACGTCTTCCAACGATACGTCAATAAGCAc : 1038259 127 : SerThrPheLeuGlyIleThrThrIleSerPheTyrIleAlaAlaGlyValIleVa : 145 ||| ||| !:!! !!!!||||||:!!.!!||| !:!!!!:|| SerLeuPheTyrIleThrCysSerSerTrpPheTyrLeuThrAlaIleIleMetVa 1038258 : tctttattttatataacatGTTCGTCATGGTTTTACTTAACAGCAATAATTATGGT : 1038202 146 : lValThrThrLeuPheThrAspGlnProPheProValMetAlaLysTyrProPheA : 164 |:!! !!:!|||.!!! !..!.!.|||||||||..!! ||| !|||||||||! lLeuGlySerLeuLeuIleSerAspProPheProThrAsnAlaValTyrProPheP 1038201 : TCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACCAACGCAGTATATCCATTCC : 1038145 165 : rgValAspTyrGluProValArgSerThrIlePheLeuAsnAspAlaPheValAla : 182 !|||:!!!:!||||||:!!||||||! !||||||:!!:!!.!.:!!||||||!.! roValAsnPheGluProLeuArgSerIleIlePheMetHisGlnSerPheValGly 1038144 : CTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCACCAATCGTTCGTTGGC : 1038091 183 : LeuGlnAsnValAlaSerValSerLeuAsnThrLeuThrAlaLeuLeuIleLeuPh : 201 :!!||| !!.!||| !!.!|||:!!|||..!|||:!!|||||||||:!:||||| IleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeuLeuLeuLeuPh 1038090 : ATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTGTTATTGCTATT : 1038034 202 : eAlaAlaAlaArgTyrAspIleValMetLeuGluLeuGlnSerAlaValThrValA : 220 |.!!.!!||||||::::::|||:::||| !||||||::!!:!!.! ! !:!!! eThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAspIleG 1038033 : CACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGATATCG : 1037977 221 : laAspLeuLysGluSerMetLysLysTyrHisGluValLys{Ar} >>>> Targ : 234 ! |||! :!!||||||||||||||| |||::!{||} luThrLeuIleLysSerMetLysLysTyrSerThrValArg{Ar}++ 1037976 : AAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGG{AG}gt......... : 1037931 235 : et Intron 2 >>>> {g}CysAlaLeuAspThrIleGlyGlyValGlnTyrVa : 246 1733 bp {|}! !||| !|||..!:!! ! !:!!!:!!:!:! ++{g}TyrAlaThrAspValValThrThrIleArgPheLe 1037930 : ................ag{G}TACGCAACGGACGTGGTTACCACAATTCGATTTCT : 1036166 247 : lThrLeuIleThrLeuValSerSerSerValIleLeuValAsnAlaGlyLeuAsnL : 265 !..!|||! !|||:!!:!!!!!!!!!!!||| ! !||| !||||||:!!|||| uValLeuSerThrValIleThrCysThrValAlaCysValPheAlaGlyIleAsnL 1036165 : GGTTCTGAGTACGGTAATCACATGCACTGTGGCGTGTGTATTTGCTGGAATTAATT : 1036109 266 : euIleGly >>>> Target Intron 3 >>>> ArgArgAspPheLeuIleL : 274 |||||||| 73 bp !:!!:! !!. !:!!| euIleGly++ ++LysGlnProLeuAlaValL 1036108 : TGATCGGAgt.........................agAAACAACCGTTGGCTGTTA : 1036009 275 : ysCysGlnTyrValPheValAlaThrThrAlaLeuLeuGluValPheSerCysVal : 292 || !|||!:!:!! !:!!::! !|||||||||||||||||||||! !||| ! ysValGlnPheLeuThrMetSerGlyThrAlaLeuLeuGluValPheMetCysSer 1036008 : AAGTTCAATTTCTTACTATGAGTGGAACCGCGTTGCTGGAAGTGTTTATGTGTTCA : 1035955 293 : LeuProAlaAspArgLeuIleGluVal >>>> Target Intron 4 >>>> : 302 ||||||||||||!.!||||||!!::!! 159 bp LeuProAlaAspHisLeuIleAspMet++ ++ 1035954 : CTACCAGCTGACCATTTGATAGATATGgt.........................ag : 1035768 303 : SerThrGlyThrMetArgSerValTyrAspValLysTrpTyrGluArgAspLeuSe : 320 ||| !..!! !|||!:!.!!:!!|||!!: !|||||||||||||||...|||.. SerGluAsnIleMetGlnGlyIleTyrGluSerLysTrpTyrGluArgSerLeuLy 1035767 : AGCGAGAACATAATGCAAGGAATATATGAATCGAAATGGTACGAACGAtctctaaa : 1035712 321 : rValGlnArgThrValTyrHisMetLeuValProGlnLysProValIleIleSerP : 339 .:::|||:::::!..! !! !||||||..!||||||...||||||! !:!!!.!. sIleGlnLysSerThrValLeuMetLeuThrProGlnSerProValThrValLysI 1035711 : aattcaaaagtcTACAGTCCTCATGTTGACTCCTCAATCTCCGGTGACAGTAAAAA : 1035655 340 : heLeuPheValValProGlnLeuSerLeuAsnTyrTyrCysSerVal : 354 !! !! !:!!:!!||| ||||||||||||:::|||||||||||| leLysCysLeuIleProValLeuSerLeuAsnPheTyrCysSerVal 1035654 : TCAAGTGCCTCATTCCAGttctttctttgaatttttactgCTCGGTA : 1035608 vulgar: Lalb_02845 5 354 . KQ414618.1 1039169 1035607 - 639 M 93 279 5 0 2 I 0 546 3 0 2 M 135 405 S 0 2 5 0 2 I 0 1729 3 0 2 S 1 1 M 33 99 5 0 2 I 0 69 3 0 2 M 34 102 5 0 2 I 0 155 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1035608 1039169 639 - . gene_id 2 ; sequence Lalb_02845 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1038891 1039169 . - . KQ414618.1 exonerate:protein2genome:local exon 1038891 1039169 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1038889 1038890 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1038341 1038890 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1038341 1038342 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1037934 1038340 . - . KQ414618.1 exonerate:protein2genome:local exon 1037934 1038340 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1037932 1037933 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1036201 1037933 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1036201 1036202 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1036101 1036200 . - . KQ414618.1 exonerate:protein2genome:local exon 1036101 1036200 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1036099 1036100 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1036028 1036100 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1036028 1036029 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1035926 1036027 . - . KQ414618.1 exonerate:protein2genome:local exon 1035926 1036027 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1035924 1035925 . - . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1035767 1035925 . - . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 1035767 1035768 . - . intron_id 3 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1035608 1035766 . - . KQ414618.1 exonerate:protein2genome:local exon 1035608 1035766 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1035608 1039169 639 - . alignment_id 2 ; Query Lalb_02845 ; Align 1039170 6 279 ; Align 1038341 99 405 ; Align 1036200 235 99 ; Align 1036028 268 102 ; Align 1035767 302 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_02845 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 198 Query range: 97 -> 234 Target range: 1052953 -> 1052542 98 : GlnArgLeuIleGluGluMetThrAspTyrLeuGluLysAlaLysLeuTyrGluMe : 116 ||||||:!!||| !||||||! ! |||:!!:!!:!!|||:!!! !!:!|||! GlnArgIleIleThrGluMetIleThrTyrValLysGluAlaGlnGlnPheGluAr 1052953 : CAGCGAATAATTACAGAAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAG : 1052899 117 : tValIlePheGlnArgTyrLeuAspThrTyrSerThrPheLeuGlyIleThrThrI : 135 !! !|||.!!!!.!.!|||:!!.!.! !! !!.! !|||! !||| !:!! !| gGluIleLeuHisAsnTyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuI 1052898 : GGAAATTCTCCACAACTATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAA : 1052842 136 : leSerPheTyrIleAlaAlaGlyValIleValValThrThrLeuPheThrAspGln : 153 ||!!! |||:!!..!||| ! !.!!|||:!! ! !!:!! !! ! .!. leTrpThrTyrLeuCysAlaThrCysPheValLeuGlyProValValLeuProAsn 1052841 : TTTGGACATACCTCTGTGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAAT : 1052788 154 : ProPheProValMetAlaLysTyrProPheArgValAspTyrGluProValArgSe : 172 ||||||||| !! |||:!!|||||||||||||||:!! ! !|||:!!!.!:! ProPheProSerSerAlaGluTyrProPheArgValAsnArgThrProMetAsnAl 1052787 : CCTTTTCCCAGCAGTGCAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGC : 1052731 173 : rThrIlePheLeuAsnAspAlaPheValAlaLeuGlnAsnValAlaSerValSerL : 191 !! !:!!!:!|||:!!.!.:!!|||:!!::!!!!||| !! !||| !:!!!!!: aIleValTyrLeuHisGlnSerPheIleSerPheGlnTyrSerAlaHisIleCysV 1052730 : TATTGTCTACCTGCACCAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTG : 1052674 192 : euAsnThrLeuThrAlaLeuLeuIleLeuPheAlaAlaAlaArgTyrAspIleVal : 209 !!!:!! !!!! !|||||||||:!!! !.!!.!!|||||||||!:! !! !:!! alSerIlePheGlyAlaLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeu 1052673 : TAAGCATTTTCGGAGCTCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTA : 1052620 210 : MetLeuGluLeuGlnSerAlaValThrValAlaAspLeuLysGluSerMetLysLy : 228 ! ||||||:!!|||..!::! !!:!:!! ! |||! !!!:!:||||| ThrLeuGluValGlnGlnSerSerSerIleHisMetLeuIleIleCysValLysLy 1052619 : ACTCTGGAGGTTCAACAAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAA : 1052563 229 : sTyrHisGluValLysArg : 234 | ! ! !:!!!:!||| sGlnLeuLeuLeuArgArg 1052562 : ACAGCTACTACTGAGGAGG : 1052543 vulgar: Lalb_02845 97 234 . KQ414618.1 1052953 1052542 - 198 M 137 411 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1052543 1052953 198 - . gene_id 3 ; sequence Lalb_02845 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1052543 1052953 . - . KQ414618.1 exonerate:protein2genome:local exon 1052543 1052953 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1052543 1052953 198 - . alignment_id 3 ; Query Lalb_02845 ; Align 1052954 98 411 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_02845 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 152 Query range: 0 -> 98 Target range: 1058517 -> 1058223 1 : MetPheAlaAspValThrProLysLysAlaIleThrPheThrLysTyrSerValIl : 19 ||| !..!:!!||||||:!!:!!||||||:!!||||||||| |||||| MetArgLysSerIleThrProGluGlnAlaIleSerPheThrLysLeuSerValAl 1058517 : ATGAGGAAAAGTATAACGCCGGAACAAGCGATCTCGTTCACGAAACTGAGCGTCGC : 1058463 20 : eLeuCysCysGlyTrpProLeuProSerSerAlaProLysSerHisPheTyrPheT : 38 !:!! !|||..!||||||! ! !! !! !||| !!!:!!!!!!. !!! .!!! aValThrCysSerTrpProProSerProLeuAlaThrArgThrGlnValLeuLeuP 1058462 : TGTAACTTGTTCGTGGCCACCGTCACCTCTGGCGACCAGAACTCAAGTTTTGCTCT : 1058406 39 : yrValIleAlaLysValLeuIleAlaLeuSerAsnIleSerValIleLeuProAla : 56 :! !! ! ! ! ! ! !:!!|||!.!|||:!!:!!:!!|||||| ! heAsnThrLeuTrpSerThrAlaPheValSerThrIleAlaLeuLeuLeuProLeu 1058405 : TTAATACGTTGTGGAGCACAGCATTCGTTAGCACCATCGCGCTGCTTTTGCCGCTA : 1058352 57 : PheTrpSerLeuLeuPheTyrIleHisAspProValArgThrGlyLysThrPheGl : 75 !!. ! .!!:!!! ! ||| ! ! ||||||:!!! ! !||||||||| !!.! LeuSerGlyIleTyrGluTyrArgLysAspProIleIleLeuGlyLysThrValSe 1058351 : TTGAGCGGAATTTACGAGTACCGTAAAGACCCCATCATTCTTGGGAAAACAGTCAG : 1058295 76 : yLeuLeuThrAlaMetCysGlnThrIleAlaTyrIleIleValCysSerPheGlnH : 94 !||| !:!!|||:!:..!|||..! ! ! ! !!:|||:!!||| !!||||||! rLeuAlaSerAlaValAlaGlnValAlaIleLysMetIleMetCysArgPheGlnG 1058294 : CCTCGCCTCGGCTGTCGCCCAGGTGGCAATCAAAATGATAATGTGCCGTTTCCAGC : 1058238 95 : isAspHisTyrGln : 98 !. ! !!.!:!||| lnLysGlnPheGln 1058237 : AGAAGCAATTCCAG : 1058224 vulgar: Lalb_02845 0 98 . KQ414618.1 1058517 1058223 - 152 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1058224 1058517 152 - . gene_id 4 ; sequence Lalb_02845 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1058224 1058517 . - . KQ414618.1 exonerate:protein2genome:local exon 1058224 1058517 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1058224 1058517 152 - . alignment_id 4 ; Query Lalb_02845 ; Align 1058518 1 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_02845 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 144 Query range: 301 -> 354 Target range: 1052134 -> 1051975 302 : SerThrGlyThrMetArgSerValTyrAspValLysTrpTyrGluArgAspLeuSe : 320 |||.!! !..! !:!||||||||||||:!!! !||||||! !!:! |||.. SerAlaLysValSerGlnSerValTyrAspLeuThrTrpTyrGlyGlnThrLeuGl 1052134 : AGTGCAAAGGTTTCACAAAGTGTGTATGATTTAACGTGGTACGGACAAACATtgga : 1052080 321 : rValGlnArgThrValTyrHisMetLeuValProGlnLysProValIleIleSerP : 339 .:::|||:::...||| ::::::||||||! !|||:!!|||||||||:!:||| uMetGlnLysAsnValLeuTyrIleLeuValHisGlnGluProValIleLeuSerV 1052079 : aatgcagaaaaatgtattatacatattgGTACACCAAGAACCGGTAATTCTGTCAG : 1052023 340 : heLeuPheValValProGlnLeuSerLeuAsnTyrTyrCysSerVal : 354 !! !! !:!!||||||:!!|||||||||..!||||||||||||||| alSerCysIleValProGluLeuSerLeuArgTyrTyrCysSerVal 1052022 : TTAGTTGCATCGTGCCGGAGCTTTCTCTTCGTTATTATTGCTCGGTA : 1051976 vulgar: Lalb_02845 301 354 . KQ414618.1 1052134 1051975 - 144 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1051976 1052134 144 - . gene_id 5 ; sequence Lalb_02845 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1051976 1052134 . - . KQ414618.1 exonerate:protein2genome:local exon 1051976 1052134 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1051976 1052134 144 - . alignment_id 5 ; Query Lalb_02845 ; Align 1052135 302 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_09696 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 328 -> 387 Target range: 1387643 -> 1387955 329 : TyrAspSerThrTrpTyrArgSerArgGlyHisArgAlaArgAspLeuAlaLeuIl : 347 |||::: |||||| ! !!:! !!....!|||||| ::: ||||| TyrAsnPheLeuTrpTyrAspLeuLysProArgGluAlaArgIleValLeuLeuIl 1387644 : tacaattttctttggTACGATCTAAAACCTCGAGAAGCTCgtattgtattattaat : 1387698 348 : eIleHisArgGlyAsnSerProTyrCysIleThrAlaGlyLysPheMetProMetA : 366 |||| |||..!.!.!.! !! :!!|||||||||||||||:!! !:!:: eIleLeuArgSerGlnLysGluLeuIleLeuThrAlaGlyLysPheValAsnLeuS 1387699 : aatattacgaTCTCAGAAAGAGTTAATACTCACTGCGGGCAAATTTGTGAATCTTT : 1387755 367 : snLeuLeuThrPheLysGlu >>>> Target Intron 1 >>>> IleLeuL : 375 :!||| !.!!||| .!. 135 bp :::|||| erLeuAlaAlaPheAlaAsn++ ++MetLeuL 1387756 : CCTTGGCTGCATTTGCTAAtgt.........................agatgCTAA : 1387917 376 : ysAlaSerAlaSerTyrMetSerValLeuLysValMet : 387 |||||||||||||||||:!:||||||||| ! !.!||| ysAlaSerAlaSerTyrValSerValLeuHisAlaMet 1387918 : AAGCTTCAGCCTCGTACGTATCTGTTTTGCATGCAATG : 1387955 vulgar: Lalb_09696 328 387 . KQ414716.1 1387643 1387955 + 108 M 44 132 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387644 1387955 108 + . gene_id 1 ; sequence Lalb_09696 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387644 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387644 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387644 1387955 108 + . alignment_id 1 ; Query Lalb_09696 ; Align 1387644 329 132 ; Align 1387911 373 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752280|ref|XP_012143908.1| PREDICTED: uncharacterized protein LOC100878986 isoform X1 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 76 -> 185 Target range: 14205 -> 13881 77 : LeuAsnLysIleThrThrGlnGlyAsnArgIleAlaAsnLeuTyrArgThrThrLeuLeu : 96 |||||| ! !|||..! ! !!.. !|||!.!!!.! !! ! !..!!.! !:!! LeuAsnAspGlnThrValTyrPheThrTyrIleValLysTyrSerIleValAsnAlaIle 14205 : TTAAACGACCAAACTGTTTATTTTACGTACATTGTCAAATATTCGATAGTGAACGCGATC : 14148 97 : SerPheLeuMetValPheIleAlaIleProLeuIleProProAlaLeuAspIleIleAla : 116 !! !:!!!!::!!|||:!:.!!! |||:!!! !|||! ! !|||||||||:!! ! ValCysValIleLeuPheValThrThrProValThrProHisIleLeuAspIleLeuLeu 14147 : GTTTGTGTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATTTTGGACATTTTACTA : 14088 117 : ProLeuAsnValThrArgProArgGlnProMetPheArgAlaAsnTyrValIleIleLys : 136 ||| !|||! !:!!||| ! ! ! !!!:!:!! !||| !!||| !!! ! !:!! ProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGlu 14087 : CCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAG : 14028 137 : ValAspAspHisPhePheValThrTyrValHisMetAlaSerValAlaSerLeuGlyVal : 156 ! ! !! !! ! !:!:!! !..!||||||||||||||| ! !:!!! ! !! HisLysTyrAspValTyrIle---IleThrHisMetAlaSerValIleLeuValValPhe 14027 : CATAAGTACGACGTGTACATA---ATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTT : 13971 157 : PheIleIleValThrValAspSerLeuTyrMetLeuIleIleHisHisAlaCysGlyLeu : 176 !:!:!: !|||.!! !|||!!! !|||!!:! !:!!:!:!!.|||!.!||||||||| TyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeu 13970 : TACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTG : 13911 177 : PheAspValCysGlyTyrGlnValGln : 185 !!.! !|||! !||| ::::::::: LeuAlaValSerGly***LysIleArg 13910 : TTGGCCGTGTCCGGgtaaaaaattcga : 13882 vulgar: gi|805752280|ref|XP_012143908.1| 76 185 . KQ414772.1 14205 13881 - 109 M 67 201 G 1 0 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13882 14205 109 - . gene_id 1 ; sequence gi|805752280|ref|XP_012143908.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13882 14205 . - . KQ414772.1 exonerate:protein2genome:local exon 13882 14205 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 13882 14205 109 - . alignment_id 1 ; Query gi|805752280|ref|XP_012143908.1| ; Align 14206 77 201 ; Align 14005 145 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752301|ref|XP_012144307.1| PREDICTED: uncharacterized protein LOC100878986 isoform X5 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 76 -> 185 Target range: 14205 -> 13881 77 : LeuAsnLysIleThrThrGlnGlyAsnArgIleAlaAsnLeuTyrArgThrThrLeuLeu : 96 |||||| ! !|||..! ! !!.. !|||!.!!!.! !! ! !..!!.! !:!! LeuAsnAspGlnThrValTyrPheThrTyrIleValLysTyrSerIleValAsnAlaIle 14205 : TTAAACGACCAAACTGTTTATTTTACGTACATTGTCAAATATTCGATAGTGAACGCGATC : 14148 97 : SerPheLeuMetValPheIleAlaIleProLeuIleProProAlaLeuAspIleIleAla : 116 !! !:!!!!::!!|||:!:.!!! |||:!!! !|||! ! !|||||||||:!! ! ValCysValIleLeuPheValThrThrProValThrProHisIleLeuAspIleLeuLeu 14147 : GTTTGTGTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATTTTGGACATTTTACTA : 14088 117 : ProLeuAsnValThrArgProArgGlnProMetPheArgAlaAsnTyrValIleIleLys : 136 ||| !|||! !:!!||| ! ! ! !!!:!:!! !||| !!||| !!! ! !:!! ProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGlu 14087 : CCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAG : 14028 137 : ValAspAspHisPhePheValThrTyrValHisMetAlaSerValAlaSerLeuGlyVal : 156 ! ! !! !! ! !:!:!! !..!||||||||||||||| ! !:!!! ! !! HisLysTyrAspValTyrIle---IleThrHisMetAlaSerValIleLeuValValPhe 14027 : CATAAGTACGACGTGTACATA---ATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTT : 13971 157 : PheIleIleValThrValAspSerLeuTyrMetLeuIleIleHisHisAlaCysGlyLeu : 176 !:!:!: !|||.!! !|||!!! !|||!!:! !:!!:!:!!.|||!.!||||||||| TyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeu 13970 : TACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTG : 13911 177 : PheAspValCysGlyTyrGlnValGln : 185 !!.! !|||! !||| ::::::::: LeuAlaValSerGly***LysIleArg 13910 : TTGGCCGTGTCCGGgtaaaaaattcga : 13882 vulgar: gi|805752301|ref|XP_012144307.1| 76 185 . KQ414772.1 14205 13881 - 109 M 67 201 G 1 0 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13882 14205 109 - . gene_id 1 ; sequence gi|805752301|ref|XP_012144307.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13882 14205 . - . KQ414772.1 exonerate:protein2genome:local exon 13882 14205 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 13882 14205 109 - . alignment_id 1 ; Query gi|805752301|ref|XP_012144307.1| ; Align 14206 77 201 ; Align 14005 145 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 426 Query range: 0 -> 212 Target range: 15387 -> 13893 1 : MetAspAlaValThrLeuGlnGlnArgTyrLeuLysLeuThrLysAlaTyrLeuLeuLeu : 20 |||||||||:!!||||||:!!.!.||||||:!!|||||||||||| !! ! !! !!!! MetAspAlaIleThrLeuGluAspArgTyrIleLysLeuThrLysIleCysAlaHisPhe 15387 : ATGGACGCGATCACTCTAGAGGATCGATACATCAAGTTGACCAAGATATGCGCCCACTTC : 15330 21 : ThrGlyMetTrpPro-----AsnGlnAsnAsnGlnIleLeuProAsnAsnCysGlyIleS : 39 :!!|||.!.||||||#####.!.|||!.! !:!!|||! ! ! ||| !..!:!!. SerGlyPheTrpPro#####GluGlnThrValGluIleArgIleAlaAsnAsnAsnValG 15329 : TCCGGTTTCTGGCCATGGCAGAGCAAACTGTCGAAATACGTATCGCGAATAATAATGTAC : 15268 40 : erTyrIleTrpHisLeuGlnGlnValAla{A} >>>> Target Intron 1 >>>> : 49 .!:!! !!::||| !...! !|||{.} 698 bp lnHisArgPheHisGlySerLeuHisAla{G}++ + 15267 : AGCATCGTTTTCACGGTTCTCTTCACGCA{G}gt.........................a : 14541 50 : {rg}ValValArgPhePheSerLeuThrValLeuIleGlnGlnLeuGlyPheLeuLeuG : 68 {.!}|||||| !!|||||||||||| !|||||||||.!.||||||..!|||!!! !! -{lu}ValValCysPhePheSerLeuAspValLeuIleAspGlnLeuSerPhePheGlyA 14540 : c{AA}GTGGTGTGTTTCTTCAGTTTGGACGTTCTTATAGATCAGCTATCATTTTTTGGCG : 14483 69 : lyGlyIleLeuLeuLeuAlaLysGlnSerAlaTyrValGlyHisLysAlaLys >>>> : 86 .!! !! ! ! !||| !||||||.!! !|||:!!! !:!!|||! !:!! laValSerAlaThrLeuLeuLysGlnGlyAsnTyrIleValTyrLysGluGlu++ 14482 : CAGTAAGCGCGACACTGTTGAAGCAGGGGAACTACATCGTCTATAAAGAGGAGgt..... : 14427 87 : Target Intron 2 >>>> PheGluThrLeuLeuHisGlyMetPheAsnAspTrpGl : 98 90 bp !:!|||:!!|||:!! !||| |||||||||.. ++TyrGluSerLeuIleSerGlyAlaArgAsnAspTrpSe 14426 : ....................agTACGAGTCGCTTATTAGCGGTGCCAGGAACGACTGGTC : 14303 99 : uAlaValArgProLysGluGluValAlaIleMetThrSerTyrMetAspArgGlyAlaPh : 118 ! !! !||||||:!!! !|||:!!! !|||||||||!.!||| !!:||||||||||| rIleGluArgProGlnGlyGluIleAspIleMetThrLysTyrAlaGluArgGlyAlaPh 14302 : GATCGAGAGACCACAAGGGGAGATCGACATTATGACTAAATACGCCGAGAGGGGtgcttt : 14243 119 : eIleValLeuIleTyrAla{V} >>>> Target Intron 3 >>>> {al}AsnVa : 127 |:::::: ||| !{|} 65 bp {||}|||!. eLeuIleSerThrTyrLeu{V}++ ++{al}AsnAl 14242 : tttaatttcgacaTACCTT{G}gt.........................ag{TG}AACGC : 14151 128 : lPheGlyCysThrLeuLeuPheIleAsnMetProTrpLeuProArgIleAlaAspIleLe : 147 !.!!! !|||..!:!!||||||:!:!.!! !||| ! !|||!.!||| !|||||||| aIleValCysValIleLeuPheValThrThrProValThrProHisIleLeuAspIleLe 14150 : GATCGTTTGTGTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATTTTGGACATTTT : 14091 148 : uMetProLeuAsnThrSerArgAspArgLeuPheIleIleProAlaCysTyrPheValAs : 167 |:!:||| !||| !||||||||| ! !!:!||| !||||||! !||||||..!|| uLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAs 14090 : ACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGA : 14031 168 : pGluAsnLysTyrTyrTyrTrpIleIleAlaHisMetThrIleIleIleIleThrAlaGl : 187 ||||:!!|||||| !! !::||||||.!!||||||.!! !:!:|||:!!..!!.! pGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPh 14030 : CGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTT : 13971 188 : ySerValTyrIleAlaCysAspThrCysPheIleTyrIleValGlnHisAlaCysGlyLe : 207 !! !||||||:!!|||||||||||| !!!:!||||||:!!|||||||||!.!|||||||| eTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLe 13970 : TTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATT : 13911 208 : uLeuGlyValAlaGly : 212 ||||!.!|||:!!||| uLeuAlaValSerGly 13910 : GTTGGCCGTGTCCGGg : 13894 vulgar: gi|383857245|ref|XP_003704115.1| 0 212 . KQ414772.1 15387 13893 - 426 M 25 75 F 0 5 M 23 69 S 0 1 5 0 2 I 0 694 3 0 2 S 1 2 M 36 108 5 0 2 I 0 86 3 0 2 M 39 117 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13894 15387 426 - . gene_id 1 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 15238 15387 . - . KQ414772.1 exonerate:protein2genome:local exon 15238 15387 . - . insertions 0 ; deletions 0 ; frameshifts 5 KQ414772.1 exonerate:protein2genome:local splice5 15236 15237 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 14540 15237 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 14540 14541 . - . intron_id 0 ; splice_site "AC" KQ414772.1 exonerate:protein2genome:local cds 14430 14539 . - . KQ414772.1 exonerate:protein2genome:local exon 14430 14539 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 14428 14429 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 14340 14429 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 14340 14341 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 14222 14339 . - . KQ414772.1 exonerate:protein2genome:local exon 14222 14339 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 14220 14221 . - . intron_id 3 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 14157 14221 . - . intron_id 3 KQ414772.1 exonerate:protein2genome:local splice3 14157 14158 . - . intron_id 2 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 13894 14156 . - . KQ414772.1 exonerate:protein2genome:local exon 13894 14156 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13894 15387 426 - . alignment_id 1 ; Query gi|383857245|ref|XP_003704115.1| ; Align 15388 1 75 ; Align 15308 26 69 ; Align 14538 50 108 ; Align 14340 86 117 ; Align 14155 126 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 423 Query range: 122 -> 385 Target range: 33682 -> 31644 123 : TyrAlaValAsnValPheGlyCysThrLeuLeuPheIleAsnMetProTrpLeuProArg : 142 :::.....!|||! ! ! !||| !:!!:!!|||! !::: !|||!:::!!|||!.! PheThrAlaAsnGlyValPheCysTyrIleMetPheSerSerAlaProPheIleProHis 33682 : ttcacagCAAACGGAGTGTTTTGCTACATCATGTTCAGCTCGGCGCCTTTTATACCGCAT : 33625 143 : IleAlaAspIleLeuMetProLeuAsnThrSerArgAspArgLeuPheIleIleProAla : 162 .!! !|||:!! !:!! !! !||| !|||||| ! ! !!!.!!: !|||||| PheIleAspValAlaLeuSerLysAsnGluSerArgLysLeuSerLeuMetTyrProAla 33624 : TTTATCGATGTTGCGTTGTCGAAAAACGAGTCACGAAAATTAAGTTTGATGTACCCTGCC : 33565 163 : CysTyrPheValAspGluAsnLysTyrTyrTyrTrpIleIleAlaHisMetThrIleIle : 182 ! !||| !:!!|||:!!:::||||||||||||:::::::::|||||||||! !! ! ! TyrTyrGlyIleAspGlnAspLysTyrTyrTyrTyrLeuMetAlaHisMetMetSerAla 33564 : TATTACGGCATTGACCAGGacaagtattattattatctaatgGCTCACATGATGAGCGCA : 33505 183 : IleIleThrAlaGlySerValTyrIleAlaCysAspThrCysPheIleTyrIleValGln : 202 !.!!!.! !! !|||!:!!!::!!||||||||| !!:!!!: !!||||||||| GlyAlaAlaValPhePheValPheMetSerCysAspThrIleTyrMetAsnIleValGln 33504 : GGGGCAGCGGTGTTTTTCGTATTTATGTCCTGCGACACGATTTATATGAATATCGTTCAA : 33445 203 : HisAlaCysGlyLeuLeuGlyValAla{Gl} >>>> Target Intron 1 >>>> : 212 |||||||||||||||||| !:!!:!!{||} 1068 bp HisAlaCysGlyLeuLeuPheIleSer{Gl}++ +- 33444 : CACGCGTGCGGATTGTTGTTCATTTCC{GG}gt.........................ac : 32347 213 : {y}TyrArgPheLysGluAlaValAspGluMetSerLysGluArgLysIleAlaAspLeu : 231 {|}::: ::: ... ! ! ! !!:!!:!! !... !|||! ! {y}PhePheTyrHisPheValGlnCysThrCysProGluGlnLeuSerTrpArgAspArg 32346 : {a}tttttttatcattttgtgCAATGTACATGTCCGGAACAGTTATCTTGGAGAGATCGA : 32290 232 : SerAsnGluThrTyrMetLysValArgArgSerValGlnGlyHisValArgAlaLeuArg : 251 ||||||! ! !!|||!!: |||!.!!!!|||! !.!.|||:!!|||||| !! ! ! SerAsnAlaProTyrIleProValHisSerSerGlyAsnGlyTyrValArgLeuGlnTyr 32289 : AGCAATGCACCATACATACCTGTTCATAGTAGTGGGAATGGTTATGTTCGCCTTCAGTAT : 32230 252 : Tyr<->LeuArgAspIleAspAspValHisAlaSerTyrLeuLeuAlaCysLeuGlyIle : 270 :!! !!:!! ! |||::: !!! !!!! ! ! ! !..!||| HisAlaAlaLysGly***ThrIlePheHisSerArgSerPheLys***AsnLysSerIle 32229 : CACGCTGCTAAGGGTTAgacaattttccattcacGTTCTTTCAAATAGAATAAATCCATT : 32170 271 : ValThrAlaAlaPheSerAlaThrLeuAlaLeuLeuSerGluLeuAspIleCysLeuGlu : 290 :!!! !.!! !! ! !||| !:!!||| !|||:!!||| LeuIleThrIle******AsnLeuArgAsnLysAlaSerMetMetAspProCysValGlu 32169 : TTGATCACGATATGAtaaaatcttcgaaataaGGCGTCTATGATGGATCCTTGCGTCGAG : 32110 291 : PheTyrGlnGlyLeuGlyPheLeuValValGlnLeuMetHisLeuPhePheLeuThrLeu : 310 ||||||:!!! !! !.!!||||||||||||||||||:!:||||||.!!||||||:!!:!! PheTyrLysAspCysSerPheLeuValValGlnLeuValHisLeuLeuPheLeuSerIle 32109 : TTCTACAAGGATTGCAGTTTCCTTGTGGTGCAGCTGGTTCATTTGCTTTTCCTTTCCATC : 32050 311 : HisGlyGluPheValIleGluSerAsnAspLysAlaTyrAsnGln{Il} >>>> Targ : 326 !!.|||.!.|||||||||! |||:!!|||:!!!.!|||:!!...{||} GlnGlyHisPheValIleValSerHisAspGlnValTyrAspSer{Il}++ 32049 : CAGGGACACTTCGTTATAGTCTCGCATGATCAGGTTTACGATAGT{AT}gt......... : 31998 327 : et Intron 2 >>>> {e}TyrGluGlyLeuTrpTyrAsnAlaAlaProLysAlaGln : 339 101 bp {|}|||...!.! !||||||!!.::!.!!|||!:!.!!||| ++{e}TyrSerAlaThrTrpTyrLysSerThrProArgThrGln 31997 : ................ag{A}TACAGTGCAACGTGGTACAAGAGTACGCCGAGAACGCAA : 31862 340 : AlaLeuTyrValLeuAlaLeuArgAlaSerAlaAlaAlaProGlnIleThrAlaGlyGly : 359 .!!||||||! !|||||||||||| !.!! !.!! !!||| !:!!|||||||||||| ThrLeuTyrGlyLeuAlaLeuArgArgGlyLeuThrProProValLeuThrAlaGlyGly 31861 : ACTTTGTACGGGCTAGCTTTGAGAAGAGGCTTGACTCCACCGGTGCTCACAGCTGGAGGA : 31802 360 : GlnIleProMetAsnLeuGluThrPheAlaVal >>>> Target Intron 3 >>>> : 371 !||| !!:!!||||||||||||||||||! ! 77 bp LeuIleSerLeuAsnLeuGluThrPheAlaGlu++ 31801 : TTGATTTCGTTGAATCTGGAGACTTTTGCTGAGgt......................... : 31764 372 : IleIleLysAlaSerValSerTyrPheThrMetLeuLysSerThr : 385 |||:!!|||||||||||||||!::||||||:!::!!||||||||| ++IleLeuLysAlaSerValSerTrpPheThrValMetLysSerThr 31763 : agATATTAAAAGCATCCGTTTCCTGGTTCACGGTAATGAAATCGACA : 31645 vulgar: gi|383857245|ref|XP_003704115.1| 122 385 . KQ414772.1 33682 31644 - 423 M 89 267 S 0 2 5 0 2 I 0 1064 3 0 2 S 1 1 M 40 120 G 0 3 M 73 219 S 0 2 5 0 2 I 0 97 3 0 2 S 1 1 M 44 132 5 0 2 I 0 73 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 31645 33682 423 - . gene_id 2 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 33414 33682 . - . KQ414772.1 exonerate:protein2genome:local exon 33414 33682 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 33412 33413 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 32346 33413 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 32346 32347 . - . intron_id 0 ; splice_site "ac" KQ414772.1 exonerate:protein2genome:local cds 32001 32345 . - . KQ414772.1 exonerate:protein2genome:local exon 32001 32345 . - . insertions 3 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 31999 32000 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 31900 32000 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 31900 31901 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 31767 31899 . - . KQ414772.1 exonerate:protein2genome:local exon 31767 31899 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 31765 31766 . - . intron_id 3 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 31690 31766 . - . intron_id 3 KQ414772.1 exonerate:protein2genome:local splice3 31690 31691 . - . intron_id 2 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 31645 31689 . - . KQ414772.1 exonerate:protein2genome:local exon 31645 31689 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 31645 33682 423 - . alignment_id 2 ; Query gi|383857245|ref|XP_003704115.1| ; Align 33683 123 267 ; Align 32345 213 120 ; Align 32222 253 219 ; Align 31899 327 132 ; Align 31690 371 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 405 Query range: 121 -> 385 Target range: 18075 -> 16519 122 : IleTyrAlaValAsnValPheGlyCysThrLeuLeuPheIleAsnMetProTrpLeuPro : 141 |||!:! !!||||||!.!!:! !|||:!!!!!|||||||||.!.:!!||||||! ! !! IlePheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpSerThr 18075 : ATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGTCGACC : 18018 142 : ArgIleAlaAspIleLeuMetProLeuAsnThrSerArgAspArgLeuPheIleIlePro : 161 |||:!:!.!:!! ! !! ! !!! !|||! !!!!! !..! !! !|||:!!|||||| ArgLeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuGlnPheValIlePro 18017 : CGATTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCC : 17958 162 : AlaCysTyrPheValAspGluAsnLysTyrTyrTyrTrpIleIleAlaHisMetThrIle : 181 !.!! !||||||||||||||| :!!|||||||||!::|||||| !||| ||| ! GlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCys 17957 : GGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGC : 17898 182 : IleIleIleThrAlaGlySerValTyrIleAlaCysAspThrCysPheIleTyrIleVal : 201 ! !|||:!:! !!.!! ! !|||||| !|||||||||||| !!!:!!!: :!:||| ThrIleLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuVal 17897 : ACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTG : 17838 202 : GlnHisAlaCysGlyLeuLeuGlyValAla{Gl} >>>> Target Intron 1 >>> : 212 ||||||.!!|||||||||!!!!.!||||||{||} 285 bp GlnHisThrCysGlyLeuPheAlaValAla{Gl}++ 17837 : CAACACACTTGCGGACTGTTCGCCGTGGCC{GG}gt........................ : 17801 213 : > {y}TyrArgPheLysGluAlaValAspGluMetSerLysGluArgLysIleAlaAsp : 230 {|}!:! !!!.! ...:!!:!! :!!.!.||| ! !!:!:!!||| !!: ++{y}PheSerLeuIleArgSerLeu---GlnPheSerPheValLysGluIle---Glu 17800 : .ag{T}TTCTCTTTGATCCGTTCTCTT---CAATTCAGCTTTGTAAAGGAAATT---GAA : 17472 231 : LeuSerAsnGluThrTyrMetLysValArgArgSerValGlnGlyHisValArgAlaLeu : 250 ! !.!!:!!!!:||||||:!: ..! !! !.!!:!! ! !! ! !::!:!! ArgGlyHisAspThrTyrLeuPheThrCysLeuGlyLeuValIleLeuCysPheSerIle 17471 : CGCGGCCATGACACGTACCTTTTCACCTGCTTAGGCTTGGTGATTCTATGCTTCAGTATT : 17412 251 : ArgTyrLeuArgAspIleAspAspValHisAlaSerTyrLeuLeuAlaCysLeuGlyIle : 270 ! ! :!!!:!! |||||| !! ! !! ! ! !!:!! ThrLeuIleLysValSerPheLeuPheProLeuSerTyrAspTyrIleSerArgCysLeu 17411 : ACTCTGATCAAGGTGagcttcctttttcctctttcctaCGACTACATTTCGCGTTGTTTA : 17352 271 : ValThrAlaAlaPheSerAlaThrLeuAlaLeuLeuSerGluLeuAspIleCysLeuGlu : 290 ::: ... |||||| !! !|||||| !! !|||.!! !:!!!!: IleCysGlyAsnPheSerLeuPheSerAsnGlnLeuSerThrSerAspPheAspIleAsp 17351 : AtctgtggaaatttttcactgttttcaaATCAGCTGAGTACGTCGGATTTCGACATAGAC : 17292 291 : PheTyrGlnGlyLeuGlyPheLeuValValGlnLeuMetHisLeuPhePheLeuThrLeu : 310 ||||||::! !! !.!!||| !:!! !|||||||||||||||||| !!:!!! !||| PheTyrArgTyrCysSerPheThrLeuCysGlnLeuMetHisLeuPheValIleMetLeu 17291 : TTCTACAGATATTGCAGTTTTACGTTGTGTCAACTGATGCACCTGTTCGTTATCATGCTT : 17232 311 : HisGlyGluPheValIleGluSerAsnAspLysAlaTyrAsnGln{Il} >>>> Targ : 326 !!.|||:!!||||||:!:!!:||| !!!:!:! !:!!.!. !{||} GlnGlyGlnPheValLeuAspSerCysGluArgIleHisGluAla{Il}++ 17231 : CAGGGACAGTTCGTGCTGGATTCGTGCGAGAGAATTCACGAGGCG{AT}gt......... : 17180 327 : et Intron 2 >>>> {e}TyrGluGlyLeuTrpTyrAsnAlaAlaProLysAlaGln : 339 402 bp {|}||||||..!|||||||||!..::!:!! !!|||.!!||| ++{e}TyrGluSerLeuTrpTyrThrSerSerSerLysThrGln 17179 : ................ag{A}TACGAATCATTATGGTACACAAGTTCTTCGAAAACACAA : 16743 340 : AlaLeuTyrValLeuAlaLeuArgAlaSerAlaAlaAlaProGlnIleThrAlaGlyGly : 359 ||||||||||||:!!||||||||| !!:! !.!! !! !! :!!|||||||||||| AlaLeuTyrValValAlaLeuArgArgAsnLeuThrProThrCysLeuThrAlaGlyGly 16742 : GCATTATACGTGGTAGCGTTACGAAGAAACCTAACACCTACCTGTTTAACGGCTGGCGGT : 16683 360 : GlnIleProMetAsnLeuGluThrPheAlaVal >>>> Target Intron 3 >>>> : 371 !:!:! !:!!|||:!!:!!!:!||||||! ! 83 bp LeuValGlnLeuAsnMetGlnSerPheAlaGlu++ 16682 : TTAGTGCAACTGAACATGCAAAGCTTCGCAGAGgt......................... : 16645 372 : IleIleLysAlaSerValSerTyrPheThrMetLeuLysSerThr : 385 :!::!!||| !||||||||||||!:!|||:!!||||||!!!||| ++ValValLysMetSerValSerTyrTyrThrValLeuLysThrThr 16644 : agGTGGTAAAAATGTCCGTTTCCTATTATACGGTGTTGAAGACAACG : 16520 vulgar: gi|383857245|ref|XP_003704115.1| 121 385 . KQ414772.1 18075 16519 - 405 M 90 270 S 0 2 5 0 2 I 0 281 3 0 2 S 1 1 M 7 21 G 1 0 M 8 24 G 1 0 M 96 288 S 0 2 5 0 2 I 0 398 3 0 2 S 1 1 M 44 132 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 16520 18075 405 - . gene_id 3 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 17804 18075 . - . KQ414772.1 exonerate:protein2genome:local exon 17804 18075 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 17802 17803 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 17519 17803 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 17519 17520 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 17183 17518 . - . KQ414772.1 exonerate:protein2genome:local exon 17183 17518 . - . insertions 0 ; deletions 2 KQ414772.1 exonerate:protein2genome:local splice5 17181 17182 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 16781 17182 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 16781 16782 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 16648 16780 . - . KQ414772.1 exonerate:protein2genome:local exon 16648 16780 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 16646 16647 . - . intron_id 3 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 16565 16647 . - . intron_id 3 KQ414772.1 exonerate:protein2genome:local splice3 16565 16566 . - . intron_id 2 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 16520 16564 . - . KQ414772.1 exonerate:protein2genome:local exon 16520 16564 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 16520 18075 405 - . alignment_id 3 ; Query gi|383857245|ref|XP_003704115.1| ; Align 18076 122 270 ; Align 17518 213 21 ; Align 17497 221 24 ; Align 17473 230 288 ; Align 16780 327 132 ; Align 16565 371 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 289 Query range: 282 -> 385 Target range: 37308 -> 36627 283 : SerGluLeuAspIleCysLeuGluPheTyrGlnGlyLeuGlyPheLeuValValGlnLeu : 302 ||| !:!!||| !|||:!!|||||||||:!! !! !!.!|||||||||||||||||| SerMetMetAspProCysMetGluPheTyrLysTyrCysAlaPheLeuValValGlnLeu 37308 : TCCATGATGGACCCTTGCATGGAGTTCTACAAGTATTGCGCTTTCTTGGTGGTGCAACTG : 37251 303 : MetHisLeuPhePheLeuThrLeuHisGlyGluPheValIleGluSerAsnAspLysAla : 322 :!:||||||.!!||||||:!!:!!!!.|||.!.||||||||| |||:!!|||! !.!! ValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleLeuSerHisAspMetThr 37250 : GTTCATTTGCTTTTCCTTTCTATCCAGGGACACTTTGTTATACTCTCGCATGACATGACT : 37191 323 : TyrAsnGln{Il} >>>> Target Intron 1 >>>> {e}TyrGluGlyLeuTrp : 331 |||:!!.!.{||} 133 bp {|}|||...!.! !||| TyrAspAsn{Il}++ ++{e}TyrSerAlaLysTrp 37190 : TACGACAAC{AT}gt.........................ag{A}TATAGCGCAAAATGG : 37031 332 : TyrAsnAlaAlaProLysAlaGlnAlaLeuTyrValLeuAlaLeuArgAlaSerAlaAla : 351 ||||||::!:!!|||!:!.!!|||.!!||||||||||||||||||||| !||| !.!! TyrAsnSerSerProArgThrGlnThrLeuTyrValLeuAlaLeuArgArgSerLeuThr 37030 : TACAACAGTTCGCCGAGAACGCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACT : 36971 352 : AlaProGlnIleThrAlaGlyGlyGlnIleProMetAsnLeuGluThrPheAlaVal > : 371 !!||| !:!!||||||||||||! !||| !!:!!||||||||||||||||||! ProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGlu++ 36970 : CCGCCATTGCTCACTGCGGGAGGACTGATTTCCTTGAATTTGGAGACTTTTGCCGaggt. : 36909 372 : >>> Target Intron 2 >>>> IleIleLysAlaSerValSerTyrPheThrMetL : 382 239 bp |||:!!|||!.!|||||||||:::||||||:!:: ++IleLeuLysGlySerValSerPhePheThrValM 36908 : ........................agaTCTTAAAAGGGtccgtttcctttttcacgGTAA : 36639 383 : euLysSerThr : 385 !!||||||||| etLysSerThr 36638 : TGAAATCGACA : 36628 vulgar: gi|383857245|ref|XP_003704115.1| 282 385 . KQ414772.1 37308 36627 - 289 M 43 129 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 44 132 5 0 2 I 0 235 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 36628 37308 289 - . gene_id 4 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 37178 37308 . - . KQ414772.1 exonerate:protein2genome:local exon 37178 37308 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 37176 37177 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 37045 37177 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 37045 37046 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 36912 37044 . - . KQ414772.1 exonerate:protein2genome:local exon 36912 37044 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 36910 36911 . - . intron_id 2 ; splice_site "gt" KQ414772.1 exonerate:protein2genome:local intron 36673 36911 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 36673 36674 . - . intron_id 1 ; splice_site "ag" KQ414772.1 exonerate:protein2genome:local cds 36628 36672 . - . KQ414772.1 exonerate:protein2genome:local exon 36628 36672 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 36628 37308 289 - . alignment_id 4 ; Query gi|383857245|ref|XP_003704115.1| ; Align 37309 283 129 ; Align 37044 327 132 ; Align 36673 371 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 289 Query range: 282 -> 385 Target range: 35874 -> 35193 283 : SerGluLeuAspIleCysLeuGluPheTyrGlnGlyLeuGlyPheLeuValValGlnLeu : 302 ||| !:!!||| !|||:!!|||||||||:!! !! !!.!|||||||||||||||||| SerMetMetAspProCysMetGluPheTyrLysTyrCysAlaPheLeuValValGlnLeu 35874 : TCCATGATGGACCCTTGCATGGAGTTCTACAAGTATTGCGCTTTCTTGGTGGTGCAACTG : 35817 303 : MetHisLeuPhePheLeuThrLeuHisGlyGluPheValIleGluSerAsnAspLysAla : 322 :!:||||||.!!||||||:!!:!!!!.|||.!.||||||||| |||:!!|||! !.!! ValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleLeuSerHisAspMetThr 35816 : GTTCATTTGCTTTTCCTTTCTATCCAGGGACACTTTGTTATACTCTCGCATGACATGACT : 35757 323 : TyrAsnGln{Il} >>>> Target Intron 1 >>>> {e}TyrGluGlyLeuTrp : 331 |||:!!.!.{||} 133 bp {|}|||...!.! !||| TyrAspAsn{Il}++ ++{e}TyrSerAlaLysTrp 35756 : TACGACAAC{AT}gt.........................ag{A}TATAGCGCAAAATGG : 35597 332 : TyrAsnAlaAlaProLysAlaGlnAlaLeuTyrValLeuAlaLeuArgAlaSerAlaAla : 351 ||||||::!:!!|||!:!.!!|||.!!||||||||||||||||||||| !||| !.!! TyrAsnSerSerProArgThrGlnThrLeuTyrValLeuAlaLeuArgArgSerLeuThr 35596 : TACAACAGTTCGCCGAGAACGCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACT : 35537 352 : AlaProGlnIleThrAlaGlyGlyGlnIleProMetAsnLeuGluThrPheAlaVal > : 371 !!||| !:!!||||||||||||! !||| !!:!!||||||||||||||||||! ! ProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGlu++ 35536 : CCGCCATTGCTCACTGCGGGAGGACTGATTTCCTTGAATTTGGAGACTTTTGCCGAGgt. : 35475 372 : >>> Target Intron 2 >>>> IleIleLysAlaSerValSerTyrPheThrMetL : 382 239 bp |||:!!|||!.!|||||||||:::||||||:!:: ++IleLeuLysGlySerValSerPhePheThrValM 35474 : ........................agaTCTTAAAAGGGtccgtttcctttttcacgGTAA : 35205 383 : euLysSerThr : 385 !!||||||||| etLysSerThr 35204 : TGAAATCGACA : 35194 vulgar: gi|383857245|ref|XP_003704115.1| 282 385 . KQ414772.1 35874 35193 - 289 M 43 129 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 44 132 5 0 2 I 0 235 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 35194 35874 289 - . gene_id 5 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 35744 35874 . - . KQ414772.1 exonerate:protein2genome:local exon 35744 35874 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 35742 35743 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 35611 35743 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 35611 35612 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 35478 35610 . - . KQ414772.1 exonerate:protein2genome:local exon 35478 35610 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 35476 35477 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 35239 35477 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 35239 35240 . - . intron_id 1 ; splice_site "ag" KQ414772.1 exonerate:protein2genome:local cds 35194 35238 . - . KQ414772.1 exonerate:protein2genome:local exon 35194 35238 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 35194 35874 289 - . alignment_id 5 ; Query gi|383857245|ref|XP_003704115.1| ; Align 35875 283 129 ; Align 35610 327 132 ; Align 35239 371 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 245 Query range: 282 -> 371 Target range: 41629 -> 41245 283 : SerGluLeuAspIleCysLeuGluPheTyrGlnGlyLeuGlyPheLeuValValGlnLeu : 302 ||| !:!!||| !|||:!!|||||||||:!!! !! !! !|||||||||||||||||| SerMetMetAspProCysValGluPheTyrLysAspCysValPheLeuValValGlnLeu 41629 : TCCATGATGGACCCTTGCGTGGAGTTCTACAAAGATTGCGTATTCTTGGTGGTGCAGCTC : 41572 303 : MetHisLeuPhePheLeuThrLeuHisGlyGluPheValIleGluSerAsnAspLysAla : 322 :!:||||||.!!||||||.!!:!!!!.|||.!.||||||! !! |||:::|||:::... ValHisLeuLeuPheLeuAlaIleGlnGlyHisPheValThrValSerHisAspGlnVal 41571 : GTTCATTTGCTTTTCCTTGCCATACAGGGACACTTCGTTACAGTCTCGCatgaccaggtt : 41512 323 : TyrAsnGln{Il} >>>> Target Intron 1 >>>> {e}TyrGluGlyLeuTrp : 331 |||:::...{!!} 117 bp {:}|||!!:!.!:!!||| TyrAspSer{Me}++ ++{t}TyrAspAlaValTrp 41511 : tacgatagt{AT}gt.........................ag{G}TACGATGCAGTATGG : 41368 332 : TyrAsnAlaAlaProLysAlaGlnAlaLeuTyrValLeuAlaLeuArgAlaSerAlaAla : 351 ||||||::!.!!|||!:!.!!|||.!!||||||:!!|||||||||||| !!!! !.!! TyrAsnSerThrProArgThrGlnThrLeuTyrMetLeuAlaLeuArgArgThrLeuThr 41367 : TACAACAGTACGCCAAGAACGCAAACTTTGTACATGCTAGCTTTGAGGAGGACTTTAACT : 41308 352 : AlaProGlnIleThrAlaGlyGlyGlnIleProMetAsnLeuGluThrPheAlaValIle : 371 !!|||! !:!!||||||||||||! ||| :::|||||||||||||||::! !:!! ProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheSerLysVal 41307 : CCACCACTGCTCACTGCAGGAGGACtgatttcgttgaatttggaaactttttcGAAGGTA : 41248 vulgar: gi|383857245|ref|XP_003704115.1| 282 371 . KQ414772.1 41629 41245 - 245 M 43 129 S 0 2 5 0 2 I 0 113 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 41246 41629 245 - . gene_id 6 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 41499 41629 . - . KQ414772.1 exonerate:protein2genome:local exon 41499 41629 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 41497 41498 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 41382 41498 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 41382 41383 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 41246 41381 . - . KQ414772.1 exonerate:protein2genome:local exon 41246 41381 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 41246 41629 245 - . alignment_id 6 ; Query gi|383857245|ref|XP_003704115.1| ; Align 41630 283 129 ; Align 41381 327 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 223 Query range: 118 -> 212 Target range: 42754 -> 42472 119 : IleValLeuIleTyrAlaValAsnValPheGlyCysThrLeuLeuPheIleAsnMetPro : 138 ::: ...|||:::...|||!.!! !.!. !!||| ! !:!!||||||::! !||| ValSerPheIlePheThrValThrGlyIleCysCysPheThrMetPheIleSerAlaPro 42754 : gtttctttcattttcacagTAACTGGAATATGTTGCTTCACAATGTTTATCTCTGCGCCT : 42697 139 : TrpLeuProArgIleAlaAspIleLeuMetProLeuAsnThrSerArgAspArgLeuPhe : 158 !:::!!|||!.!:!! !|||:!!:!!:!: !! !||| !|||||| ! ! !||| TyrIleProHisValTyrAspValMetLeuSerLysAsnGluSerArgLysLeuGlyPhe 42696 : TATATACCGCATGTATATGATGTTATGTTATCGAAAAACGAGTCACGAAAGTTGGGTTTC : 42637 159 : IleIleProAlaCysTyrPheValAspGluAsnLysTyrTyrTyrTrpIleIleAlaHis : 178 ||| !||||||! !||| !||||||:!!:!!||||||||||||!::|||||||||||| IleTyrProAlaTyrTyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAlaHis 42636 : ATTTACCCTGCCTATTATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCTCAC : 42577 179 : MetThrIleIleIleIleThrAlaGlySerValTyrIleAlaCysAspThrCysPheIle : 198 |||||| ! !:!!..!!.! !! !..!!:!|||:!!||||||||| !!:!!!: MetThrSerGlyGlyLeuValValPhePheThrPheIleSerCysAspThrIleTyrMet 42576 : ATGACATCTGGGGGCTTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTACATG : 42517 199 : TyrIleValGlnHisAlaCysGlyLeuLeuGlyValAlaGly : 212 !!||||||||||||||||||||||||||| !:!!:!!||| AsnIleValGlnHisAlaCysGlyLeuLeuLeuIleSerGly 42516 : AATATCGTGCAACACGCGTGCGGATTGTTGTTGATTTCTGGG : 42473 vulgar: gi|383857245|ref|XP_003704115.1| 118 212 . KQ414772.1 42754 42472 - 223 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42473 42754 223 - . gene_id 7 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42473 42754 . - . KQ414772.1 exonerate:protein2genome:local exon 42473 42754 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42473 42754 223 - . alignment_id 7 ; Query gi|383857245|ref|XP_003704115.1| ; Align 42755 119 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 215 Query range: 120 -> 212 Target range: 38045 -> 37769 121 : LeuIleTyrAlaValAsnValPheGlyCysThrLeuLeuPheIleAsnMetProTrpLeu : 140 ||| !!:!.!!||||||! !.!. !||| !:!!:!!|||! !::::!! !! ! LeuTyrPheThrValAsnGlyLeuPheCysTyrValIlePheThrSerValAlaIleThr 38045 : CTGTATTTCACAGTAAACGGACTGTTTTGCTACGTTATATTCACCTCAGTGGCGATTACG : 37988 141 : ProArgIleAlaAspIleLeuMetProLeuAsnThrSerArgAspArgLeuPheIleIle : 160 ||||||:!! !|||:!!:!! ||| !||| !||||||! ! !|||||| ! ProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValAspPheIleTyr 37987 : CCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTCATTTAT : 37928 161 : ProAlaCysTyrPheValAspGluAsnLysTyrTyrTyrTrpIleIleAlaHisMetThr : 180 ||||||! !||| !:!!||||||.!.:!!:!!|||||| :!:!!:!.!|||||| ! ProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHisMetLeu 37927 : CCTGCATACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCACATGCTC : 37868 181 : IleIleIleIleThrAlaGlySerValTyrIleAlaCysAspThrCysPheIleTyrIle : 200 !:!:|||! !..!!.! !! !|||||||||:!!||||||||| !!:!!!: !||| CysValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMetSerIle 37867 : TGCGTGATAACTGTAGTGTTTTTCGTGTACATCTCCTGTGACACGATCTACATGAGCATC : 37808 201 : ValGlnHisAlaCysGlyLeuLeuGlyValAlaGly : 212 ||||||||||||||||||||||||..!|||:!!||| ValGlnHisAlaCysGlyLeuLeuAsnValSerGly 37807 : GTTCAACACGCGTGCGGATTACTGAACGTCTCTGGG : 37770 vulgar: gi|383857245|ref|XP_003704115.1| 120 212 . KQ414772.1 38045 37769 - 215 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37770 38045 215 - . gene_id 8 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37770 38045 . - . KQ414772.1 exonerate:protein2genome:local exon 37770 38045 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 37770 38045 215 - . alignment_id 8 ; Query gi|383857245|ref|XP_003704115.1| ; Align 38046 121 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 215 Query range: 116 -> 212 Target range: 24464 -> 24176 117 : AlaPheIleValLeuIleTyrAlaValAsnValPheGlyCysThrLeuLeuPheIleAsn : 136 ...||| ||| ! !|||!.!|||! !.!! !||| !:!!||||||! ! ThrPheSerSerLeuTyrValAlaAlaAsnGlyIlePheCysTyrValLeuPheThrAla 24464 : acattttcttctctataTGTCGCAGCAAATGGAATCTTCTGCTACGTTCTCTTCACCGCA : 24407 137 : MetProTrpLeuProArgIleAlaAspIleLeuMetProLeuAsnThrSerArgAspArg : 156 :!! !! !||||||:!! !|||:!!:!! !||| !||| !||||||! ! ValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyVal 24406 : GTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTG : 24347 157 : LeuPheIleIleProAlaCysTyrPheValAspGluAsnLysTyrTyrTyrTrpIleIle : 176 !|||||| !|||||| !||| !|||||||||.!.:!!:!!||||||!:::!:!!: GlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyrTyrTyrLeuMet 24346 : GGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTACTACTATCTGATG : 24287 177 : AlaHisMetThrIleIleIleIleThrAlaGlySerValTyrIleAlaCysAspThrCys : 196 !.!|||||| ! !:!:|||! !..!!.! !! !|||||||||:!!||||||||| ! GlyHisMetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThrIle 24286 : GGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATC : 24227 197 : PheIleTyrIleValGlnHisAlaCysGlyLeuLeuGlyValAlaGly : 212 !:!!!: !!|||||||||||||||||||||||||||..!:!!:!!||| TyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSerGly 24226 : TACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCTGGG : 24177 vulgar: gi|383857245|ref|XP_003704115.1| 116 212 . KQ414772.1 24464 24176 - 215 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24177 24464 215 - . gene_id 9 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24177 24464 . - . KQ414772.1 exonerate:protein2genome:local exon 24177 24464 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 24177 24464 215 - . alignment_id 9 ; Query gi|383857245|ref|XP_003704115.1| ; Align 24465 117 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 211 Query range: 122 -> 212 Target range: 29625 -> 29355 123 : TyrAlaValAsnValPheGlyCysThrLeuLeuPheIleAsnMetProTrpLeuProArg : 142 ::!.!!!.!|||! !.!! !||| !:!!:!!|||! !::::!! !! !|||||| PheThrAlaAsnGlyIlePheCysTyrValIlePheThrSerValAlaIleThrProArg 29625 : tTCACAGCAAATGGAATCTTCTGCTACGTTATATTCACCTCAGTGGCGATAACCCCTCGT : 29568 143 : IleAlaAspIleLeuMetProLeuAsnThrSerArgAspArgLeuPheIleIleProAla : 162 :!! !|||:!!:!! !||| !||| !||||||! ! !|||||| !|||||| ValLeuAspLeuIleSerProLysAsnGluSerArgGlyValGlyPheIleTyrProAla 29567 : GTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTGGGCTTCATTTATCCTGCA : 29508 163 : CysTyrPheValAspGluAsnLysTyrTyrTyrTrpIleIleAlaHisMetThrIleIle : 182 ! !||| !:!!||||||.!.:!!:!!||||||!:::!:!!:!.!|||||| ! !:!: TyrTyrGlyLeuAspGluGluGluHisTyrTyrTyrLeuMetGlyHisMetLeuSerVal 29507 : TACTACGGTCTTGACGAAGAGGAGCATTACTACTATCTGATGGGTCACATGCTTTCCGTG : 29448 183 : IleIleThrAlaGlySerValTyrIleAlaCysAspThrCysPheIleTyrIleValGln : 202 |||! !..!!.! !! !|||||||||:!!||||||||| !!:!!!: !!:!!|||||| IleThrValValPhePheValTyrIleSerCysAspThrIleTyrMetAsnValValGln 29447 : ATAACCGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATCTATATGAATGTCGTGCAA : 29388 203 : HisAlaCysGlyLeuLeuGlyValAlaGly : 212 ||||||||||||||||||..!|||:!!||| HisAlaCysGlyLeuLeuAsnValSerGly 29387 : CACGCGTGTGGATTATTGAACGTCTCTGGG : 29356 vulgar: gi|383857245|ref|XP_003704115.1| 122 212 . KQ414772.1 29625 29355 - 211 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29356 29625 211 - . gene_id 10 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29356 29625 . - . KQ414772.1 exonerate:protein2genome:local exon 29356 29625 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 29356 29625 211 - . alignment_id 10 ; Query gi|383857245|ref|XP_003704115.1| ; Align 29626 123 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 208 Query range: 281 -> 358 Target range: 23441 -> 23140 282 : LeuSerGluLeuAspIleCysLeuGluPheTyrGlnGlyLeuGlyPheLeuValValGln : 301 :!!||| !:!!:!! !|||:!!|||||||||:!! ! !|||||||||||||||||| ValSerThrMetAsnProCysValGluPheTyrLysTyrGlyGlyPheLeuValValGln 23441 : GTATCCACGATGAACCCTTGCGTGGAGTTCTACAAGTATGGTGGTTTCTTGGTGGTGCAA : 23384 302 : LeuMetHisLeuPhePheLeuThrLeuHisGlyGluPheValIleGluSerAsnAspLys : 321 |||:!:||||||.!!||||||:!!:!!!!.|||.!.|||||||||! |||:!!|||! ! LeuValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleValSerHisAspThr 23383 : CTGGTTCATTTGCTTTTCCTTTCTATCCAGGGACACTTCGTTATAGTCTCGCATGACACG : 23324 322 : AlaTyrAsnGln{Il} >>>> Target Intron 1 >>>> {e}TyrGluGlyLeu : 330 .!!! !:!!.!.{||} 70 bp {|}|||...!.! ! ThrSerAspAsn{Il}++ ++{e}TyrSerAlaThr 23323 : ACTTCCGATAAT{AT}gt.........................ag{A}TACAGCGCTACA : 23227 331 : TrpTyrAsnAlaAlaProLysAlaGlnAlaLeuTyrValLeuAlaLeuArgAlaSerAla : 350 |||||||||!.!.!!||||||!.!||||||||||||||||||||||||||| !!:! ! TrpTyrAsnGlyThrProLysValGlnAlaLeuTyrValLeuAlaLeuArgArgAsnLeu 23226 : TGGTACAACGGTACACCGAAAGTGCAAGCTTTGTACGTGCTAGCTTTGAGAAGGAACTTG : 23167 351 : AlaAlaProGlnIleThrAlaGly : 358 .!! !!|||! !|||||||||||| ThrProProLeuIleThrAlaGly 23166 : ACTCCACCGCTGATCACTGCCGGA : 23141 vulgar: gi|383857245|ref|XP_003704115.1| 281 358 . KQ414772.1 23441 23140 - 208 M 44 132 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 23141 23441 208 - . gene_id 11 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 23308 23441 . - . KQ414772.1 exonerate:protein2genome:local exon 23308 23441 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 23306 23307 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 23238 23307 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 23238 23239 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 23141 23237 . - . KQ414772.1 exonerate:protein2genome:local exon 23141 23237 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 23141 23441 208 - . alignment_id 11 ; Query gi|383857245|ref|XP_003704115.1| ; Align 23442 282 132 ; Align 23237 327 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 196 Query range: 120 -> 210 Target range: 20595 -> 20325 121 : LeuIleTyrAlaValAsnValPheGlyCysThrLeuLeuPheIleAsnMetProTrpLeu : 140 |||! ! !.!!!.!:!!:!!||| ! !.!! !:!!|||:!! !:!!|||!:: ! LeuThrSerThrAlaHisLeuPheLeuProAlaAlaIlePheLeuCysValProPheAla 20595 : TTGACGTCTACAGCGCATTTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCA : 20538 141 : ProArgIleAlaAspIleLeuMetProLeuAsnThrSerArgAspArgLeuPheIleIle : 160 |||! !||| !||||||! ! !|||||||||! !!!!||| ! |||:!!|||:!! ! ProIleIleLeuAspIleTyrAlaProLeuAsnLysThrArgLysArgValPheValTyr 20537 : CCGATCATCTTGGACATTTACGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTAT : 20478 161 : ProAlaCysTyrPheValAspGluAsnLysTyrTyrTyrTrpIleIleAlaHisMetThr : 180 ||||||! !|||!:::!!||| .!.:!!|||||| !!:||| !|||!!:! ! ProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMetIleMetIleIleHisIleMet 20477 : CCAGCCTATTACTGGATGGATCCTGAGCAATACTACATGATAATGATAATACACATAATG : 20418 181 : IleIleIleIleThrAlaGlySerValTyrIleAlaCysAspThrCysPheIleTyrIle : 200 .!!:!::!:|||! !!.! !! !:!!!:! !|||||||||! ! !!:!:!:||| ! PheValValIleMetValCysValIlePheCysAlaCysAspMetAsnTyrValTyrAla 20417 : TTCGTGGTGATCATGGTCTGTGTCATATTCTGTGCTTGCGACATGAACTACGTGTACGCT : 20358 201 : ValGlnHisAlaCysGlyLeuLeuGlyVal : 210 ||||||||||||||||||||||||!.!||| ValGlnHisAlaCysGlyLeuLeuAlaVal 20357 : GTGCAGCACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: gi|383857245|ref|XP_003704115.1| 120 210 . KQ414772.1 20595 20325 - 196 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20595 196 - . gene_id 12 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20595 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20595 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20326 20595 196 - . alignment_id 12 ; Query gi|383857245|ref|XP_003704115.1| ; Align 20596 121 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 167 Query range: 326 -> 384 Target range: 19628 -> 19369 327 : TyrGluGlyLeuTrpTyrAsnAlaAlaProLysAlaGlnAlaLeuTyrValLeuAlaLeu : 346 ||||||..!! !||||||||| !.!!|||!:!.!!|||||||||||||||||||||||| TyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeu 19628 : TACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTG : 19571 347 : ArgAlaSerAlaAlaAlaProGlnIleThrAlaGlyGlyGlnIleProMetAsnLeuGlu : 366 |||::!!!! ! ! !!|||! !:!!||||||||||||..!! !!:!!||||||..! ArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArg 19570 : AGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGA : 19511 367 : ThrPheAlaVal >>>> Target Intron 1 >>>> IleIleLysAlaSerValS : 377 :!!||||||! ! 85 bp ||||||||||||||||||| SerPheAlaGlu++ ++IleIleLysAlaSerValS 19510 : TCGTTCGCAGAGgt.........................agATCATCAAAGCATCTGTTT : 19393 378 : erTyrPheThrMetLeuLysSer : 384 |||||!:!|||:!!:!!:!!!!! erTyrTyrThrValMetGlnThr 19392 : CCTACTACACGGTGATGCAGACC : 19370 vulgar: gi|383857245|ref|XP_003704115.1| 326 384 . KQ414772.1 19628 19369 - 167 M 44 132 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 19370 19628 167 - . gene_id 13 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 19497 19628 . - . KQ414772.1 exonerate:protein2genome:local exon 19497 19628 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 19495 19496 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 19412 19496 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 19412 19413 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 19370 19411 . - . KQ414772.1 exonerate:protein2genome:local exon 19370 19411 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 19370 19628 167 - . alignment_id 13 ; Query gi|383857245|ref|XP_003704115.1| ; Align 19629 327 132 ; Align 19412 371 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 138 Query range: 326 -> 375 Target range: 12643 -> 12496 327 : TyrGluGlyLeuTrpTyrAsnAlaAlaProLysAlaGlnAlaLeuTyrValLeuAlaLeu : 346 |||...!.!||||||||||||::!! ! !!:!.!!|||:!!|||!:!|||||||||||| TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeu 12643 : TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGTTA : 12586 347 : ArgAlaSerAlaAlaAlaProGlnIleThrAlaGlyGlyGlnIleProMetAsnLeuGlu : 366 ||| !!!! !:!!||||||||||||||||||||||||! !||| !!|||||||||:!! ArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGln 12585 : AGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAA : 12526 367 : ThrPheAlaValIleIleLysAlaSer : 375 !:!|||:!!! !:!!! !!..:!!||| SerPheSerGluValThrSerSerSer 12525 : AGTTTCTCAGAGGTAACAAGTTCATCG : 12497 vulgar: gi|383857245|ref|XP_003704115.1| 326 375 . KQ414772.1 12643 12496 - 138 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 12497 12643 138 - . gene_id 14 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 12497 12643 . - . KQ414772.1 exonerate:protein2genome:local exon 12497 12643 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 12497 12643 138 - . alignment_id 14 ; Query gi|383857245|ref|XP_003704115.1| ; Align 12644 327 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 315 -> 371 Target range: 28149 -> 27981 316 : IleGluSerAsnAspLysAlaTyrAsnGlnIleTyrGluGlyLeuTrpTyrAsnAlaAla : 335 :!!:!!!:!! !.!.||| !!:! !!::! !! !! !.! !|||||||||::!.!! LeuGlnAsnIleGlnLysLeuPheValArgArgCysAlaAlaThrTrpTyrAsnSerThr 28149 : CTTCAAAACATTCAGAAGTTGTTCGTTCGCAGATGCGCTGCAACATGGTACAACAGTACA : 28092 336 : ProLysAlaGlnAlaLeuTyrValLeuAlaLeuArgAlaSerAlaAlaAlaProGlnIle : 355 !!!:!.!!||||||||||||:!!|||||||||||| !!:! !.!! !!|||! !||| SerArgThrGlnAlaLeuTyrMetLeuAlaLeuArgArgAsnLeuThrProProLeuIle 28091 : TCTAGAACGCAAGCTTTGTACATGCTAGCTTTGAGAAGGAACTTGACACCACCACTGATC : 28032 356 : ThrAlaGlyGlyGlnIleProMetAsnLeuGluThrPheAlaValIle : 371 ||||||||||||! !||| !!:!!||||||||||||||||||! !:!! ThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGluVal 28031 : ACCGCCGGAGGACTGATTTCCTTGAATTTGGAGACCTTCGCGGAGGTA : 27982 vulgar: gi|383857245|ref|XP_003704115.1| 315 371 . KQ414772.1 28149 27981 - 126 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 27982 28149 126 - . gene_id 15 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 27982 28149 . - . KQ414772.1 exonerate:protein2genome:local exon 27982 28149 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 27982 28149 126 - . alignment_id 15 ; Query gi|383857245|ref|XP_003704115.1| ; Align 28150 316 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 281 -> 326 Target range: 28321 -> 28186 282 : LeuSerGluLeuAspIleCysLeuGluPheTyrGlnGlyLeuGlyPheLeuValValGln : 301 :!!||| !:!!:!! !|||:!!|||||||||:!! !! !|||||||||||||||||| ValSerMetMetAsnProCysValGluPheTyrLysTyrCysGlyPheLeuValValGln 28321 : GTGTCCATGATGAACCCTTGCGTGGAGTTCTACAAGTATTGCGGTTTCTTGGTGGTGCAA : 28264 302 : LeuMetHisLeuPhePheLeuThrLeuHisGlyGluPheValIleGluSerAsnAspLys : 321 |||:!:||||||.!!||||||:!!:!!!!.|||.!.|||||||||! |||:!!|||! ! LeuValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleValSerHisAspMet 28263 : CTGGTTCATTTGCTTTTCCTTTCTATCCAGGGACACTTCGTTATAGTCTCGCATGACATG : 28204 322 : AlaTyrAsnGlnIle : 326 .!!|||:!!.!.!!: ThrTyrAspAsnMet 28203 : ACTTACGATAATATG : 28187 vulgar: gi|383857245|ref|XP_003704115.1| 281 326 . KQ414772.1 28321 28186 - 124 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 28187 28321 124 - . gene_id 16 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 28187 28321 . - . KQ414772.1 exonerate:protein2genome:local exon 28187 28321 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 28187 28321 124 - . alignment_id 16 ; Query gi|383857245|ref|XP_003704115.1| ; Align 28322 282 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 281 -> 328 Target range: 12840 -> 12699 282 : LeuSerGluLeuAspIleCysLeuGluPheTyrGlnGlyLeuGlyPheLeuValValGln : 301 :!!|||.!.! !!!:||| ! !|||||| !:!!! !! ! !|||:!!|||:!!||| ValSerAsnSerGluIleAsnAlaGluPheAlaLysAspCysThrPheIleValIleGln 12840 : GTGTCGAACTCGGAGATTAATGCGGAGTTTGCCAAGGATTGCACATTTATCGTGATTCAA : 12783 302 : LeuMetHisLeuPhePheLeuThrLeuHisGlyGluPheValIleGluSerAsnAspLys : 321 |||:!:|||:!!.!!!:!|||||||||!!.|||:!!|||||||||!!::!!|||!!::!! LeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAspAlaAsnGluGlu 12782 : TTGGTACACATACTTTACCTAACTCTTCAAGGACAATTCGTGATCGACGCGAACGAGGAA : 12723 322 : AlaTyrAsnGlnIleTyrGlu : 328 !!:!.!...!!!:!! ||| IlePheGluSerMet***Glu 12722 : ATCTTCGAATCGATGTAagaa : 12700 vulgar: gi|383857245|ref|XP_003704115.1| 281 328 . KQ414772.1 12840 12699 - 100 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 12700 12840 100 - . gene_id 17 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 12700 12840 . - . KQ414772.1 exonerate:protein2genome:local exon 12700 12840 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 12700 12840 100 - . alignment_id 17 ; Query gi|383857245|ref|XP_003704115.1| ; Align 12841 282 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_09696 [mRNA] [translate_table: standard] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 328 -> 385 Target range: 1345588 -> 1345837 329 : TyrAspSerThrTrpTyrArgSerArgGlyHisArgAlaArgAspLeuAlaLeuIl : 347 ||| !|||!.!|||||| !! !! !! ! ! !.!!|||...||| !!!! TyrPheSerAsnTrpTyrAspLeuProAspLysTyrThrArgSerLeuIlePheCy 1345589 : TACTTCAGTAATTGGTACGATTTACCAGATAAATACACGCGATCGTTAATATTTTG : 1345643 348 : eIleHisArgGlyAsnSerProTyrCysIleThrAlaGlyLysPheMetProMetA : 366 !||| !|||..!.!.!.!|||! ! !:!!||||||||||||||| !.!.: sIleAlaArgSerGlnLysProSerTyrLeuThrAlaGlyLysPheTyrValPheS 1345644 : CATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAGCTGGCAAGTTCTACGTGTTCT : 1345700 367 : snLeuLeuThrPheLysGlu >>>> Target Intron 1 >>>> IleLeuL : 375 ::||| !|||||| 78 bp |||:!!| erLeuGluThrPheGlyIle++ ++IleValL 1345701 : CGTTAGAAACATTCGGCATCgt.........................agATAGTAA : 1345805 376 : ysAlaSerAlaSerTyrMetSerValLeuLys : 385 |||||||| !:!!|||:!:|||||||||||| ysAlaSerMetAlaTyrLeuSerValLeuLys 1345806 : AAGCGTCGATGGCCTATCTTTCCGTTCTGAAA : 1345837 vulgar: Lalb_09696 328 385 . KQ414782.1 1345588 1345837 + 100 M 44 132 5 0 2 I 0 74 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345589 1345837 100 + . gene_id 1 ; sequence Lalb_09696 ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345589 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345589 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345837 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345837 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345589 1345837 100 + . alignment_id 1 ; Query Lalb_09696 ; Align 1345589 329 132 ; Align 1345799 373 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754618|ref|XP_012138745.1| PREDICTED: uncharacterized protein LOC100875437 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 144 -> 230 Target range: 26231 -> 25976 145 : GlyIlePheLeuMetIleProLeuIleAlaProLeuLeuAspValValLeuProLeuAsn : 164 !.!:!!|||:!! :!:|||!!!:!::!!|||:!!||||||:!!:!!:!!||||||||| AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsn 26231 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAAC : 26174 165 : GluThrArgProArgGlnGlnLeuPheLysValAsnTyrValValPheAspGluArgAsp : 184 ||||||||| !!||| ! :!!!:! !!.! !!||| !!||| |||||| ! ! GluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal---AspGluAspLys 26173 : GAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC---GACGAGGACAAA : 26117 185 : TyrPhePheProValTyrPheGlnLeuAlaIleGlyAlaPheIleIleValThrGlyIle : 204 ||| !!:! !:!! !!.:!! !:!!! !!.! ! !!::!!:!!:!!! !.!! TyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPhe 26116 : TATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTC : 26057 205 : IleThrIleAspSerLeuTyrMetValIleIleHisTyrAsnSerGlyMetPheAlaVal : 224 !.!! !|||:!! !|||:!! ! !:!:!!.:!! !!!!|||:!!!!.|||:!! CysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 26056 : TGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 25997 225 : CysGlyTyrGlnValGln : 230 ...|||!! !|||||| AlaGly***LeuValGln 25996 : GCAGGGTAATTAGTTCAA : 25977 vulgar: gi|805754618|ref|XP_012138745.1| 144 230 . LHQN01017803.1 26231 25976 - 120 M 35 105 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25977 26231 120 - . gene_id 1 ; sequence gi|805754618|ref|XP_012138745.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25977 26231 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25977 26231 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25977 26231 120 - . alignment_id 1 ; Query gi|805754618|ref|XP_012138745.1| ; Align 26232 145 105 ; Align 26127 181 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752313|ref|XP_012144604.1| PREDICTED: uncharacterized protein LOC100878875 isoform X2 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 95 -> 175 Target range: 26225 -> 25988 96 : PheIleTyrIleProLeuIleAsnProThrLeuAspLeuIleIleProLeuAsnGluThr : 115 |||!!:! !:!:|||!!!:!::::|||! !||||||:!!:!!!!:||||||||||||||| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThr 26225 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACG : 26168 116 : ArgProLysGluGlnLeuPheGlyValCysTyrValPheIleAsnProAspAspTyrPhe : 135 ||| !!::! ! :!!!:! !..!||| !|||:!!:!! !||| ! ||| ! ArgAlaArgLeuPheValTyr---ProAlaTyrTyrPheValAspGluAspLysTyrHis 26167 : CGAGCACGGTTGTTCGTCTAT---CCAGCTTACTATTTCGTCGACGAGGACAAATATCAT : 26111 136 : ThrAlaValPheLeuHisMetGlyTrpThrThrTrpValThrValTyrAsnIleIleThr : 155 ! !:!! ! !|||||| ! ..!..! :!! !:!!! ! !.!! !.!! TyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 26110 : TACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 26051 156 : ValAspSerLeuTyrIleLeuIleIleHisHisValCysGlyLeuPheAspValCysGly : 175 !|||:!! !|||:!:! ! !:!:!!.|||!.!|||||||||!!.! !:!!...||| CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 26050 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 25991 vulgar: gi|805752313|ref|XP_012144604.1| 95 175 . LHQN01017803.1 26225 25988 - 121 M 27 81 G 1 0 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26225 121 - . gene_id 1 ; sequence gi|805752313|ref|XP_012144604.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26225 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26225 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26225 121 - . alignment_id 1 ; Query gi|805752313|ref|XP_012144604.1| ; Align 26226 96 81 ; Align 26145 124 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752280|ref|XP_012143908.1| PREDICTED: uncharacterized protein LOC100878986 isoform X1 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 76 -> 185 Target range: 14242 -> 13918 77 : LeuAsnLysIleThrThrGlnGlyAsnArgIleAlaAsnLeuTyrArgThrThrLeuLeu : 96 |||||| ! !|||..! ! !!.. !|||!.!!!.! !! ! !.!!!.! !:!! LeuAsnAspGlnThrValTyrPheThrTyrIleValLysTyrSerIleAlaAsnAlaIle 14242 : TTAAACGACCAAACTGTTTATTTTACGTACATTGTCAAATATTCGATAGCGAACGCGATC : 14185 97 : SerPheLeuMetValPheIleAlaIleProLeuIleProProAlaLeuAspIleIleAla : 116 !! !:!!!!::!!|||:!::!!! |||:!!! !|||! ! !|||||||||:!! ! ValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeu 14184 : GTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTA : 14125 117 : ProLeuAsnValThrArgProArgGlnProMetPheArgAlaAsnTyrValIleIleLys : 136 ||| !|||! !:!!||| ! ! ! !!!:!:!! !||| !!||| !!! ! !:!! ProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGlu 14124 : CCGAAGAACGAGTCACGAGACGTAGCGTACATTTATCCGGCCTATTATTTCACCGACGAG : 14065 137 : ValAspAspHisPhePheValThrTyrValHisMetAlaSerValAlaSerLeuGlyVal : 156 ! ! !! !! ! !:!:!! !..!||||||||||||||| ! !:!!! ! !! HisLysTyrAspValTyrIle---IleThrHisMetAlaSerValIleLeuValValPhe 14064 : CATAAGTACGACGTGTACATA---ATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTT : 14008 157 : PheIleIleValThrValAspSerLeuTyrMetLeuIleIleHisHisAlaCysGlyLeu : 176 !:!:!: !|||.!! !|||!!! !|||!!:! !:!!:!:!!.|||!.!||||||||| TyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeu 14007 : TACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTG : 13948 177 : PheAspValCysGlyTyrGlnValGln : 185 !!.! !|||! !||| ::::::::: LeuAlaValSerGly***LysIleArg 13947 : TTGGCCGTGTCCGGgtaaaaaattcga : 13919 vulgar: gi|805752280|ref|XP_012143908.1| 76 185 . LHQN01017803.1 14242 13918 - 110 M 67 201 G 1 0 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13919 14242 110 - . gene_id 1 ; sequence gi|805752280|ref|XP_012143908.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13919 14242 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13919 14242 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 13919 14242 110 - . alignment_id 1 ; Query gi|805752280|ref|XP_012143908.1| ; Align 14243 77 201 ; Align 14042 145 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752301|ref|XP_012144307.1| PREDICTED: uncharacterized protein LOC100878986 isoform X5 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 76 -> 185 Target range: 14242 -> 13918 77 : LeuAsnLysIleThrThrGlnGlyAsnArgIleAlaAsnLeuTyrArgThrThrLeuLeu : 96 |||||| ! !|||..! ! !!.. !|||!.!!!.! !! ! !.!!!.! !:!! LeuAsnAspGlnThrValTyrPheThrTyrIleValLysTyrSerIleAlaAsnAlaIle 14242 : TTAAACGACCAAACTGTTTATTTTACGTACATTGTCAAATATTCGATAGCGAACGCGATC : 14185 97 : SerPheLeuMetValPheIleAlaIleProLeuIleProProAlaLeuAspIleIleAla : 116 !! !:!!!!::!!|||:!::!!! |||:!!! !|||! ! !|||||||||:!! ! ValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeu 14184 : GTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTA : 14125 117 : ProLeuAsnValThrArgProArgGlnProMetPheArgAlaAsnTyrValIleIleLys : 136 ||| !|||! !:!!||| ! ! ! !!!:!:!! !||| !!||| !!! ! !:!! ProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGlu 14124 : CCGAAGAACGAGTCACGAGACGTAGCGTACATTTATCCGGCCTATTATTTCACCGACGAG : 14065 137 : ValAspAspHisPhePheValThrTyrValHisMetAlaSerValAlaSerLeuGlyVal : 156 ! ! !! !! ! !:!:!! !..!||||||||||||||| ! !:!!! ! !! HisLysTyrAspValTyrIle---IleThrHisMetAlaSerValIleLeuValValPhe 14064 : CATAAGTACGACGTGTACATA---ATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTT : 14008 157 : PheIleIleValThrValAspSerLeuTyrMetLeuIleIleHisHisAlaCysGlyLeu : 176 !:!:!: !|||.!! !|||!!! !|||!!:! !:!!:!:!!.|||!.!||||||||| TyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeu 14007 : TACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTG : 13948 177 : PheAspValCysGlyTyrGlnValGln : 185 !!.! !|||! !||| ::::::::: LeuAlaValSerGly***LysIleArg 13947 : TTGGCCGTGTCCGGgtaaaaaattcga : 13919 vulgar: gi|805752301|ref|XP_012144307.1| 76 185 . LHQN01017803.1 14242 13918 - 110 M 67 201 G 1 0 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13919 14242 110 - . gene_id 1 ; sequence gi|805752301|ref|XP_012144307.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13919 14242 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13919 14242 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 13919 14242 110 - . alignment_id 1 ; Query gi|805752301|ref|XP_012144307.1| ; Align 14243 77 201 ; Align 14042 145 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 425 Query range: 0 -> 212 Target range: 15461 -> 13930 1 : MetAspAlaValThrLeuGlnGlnArgTyrLeuLysLeuThrLysAlaTyrLeuLeuLeu : 20 |||||||||:!!||||||:!!:!!|||!:!:!!|||||||||||| !! ! !! !!!! MetAspAlaIleThrLeuGluGluArgPheIleLysLeuThrLysIleCysAlaHisPhe 15461 : ATGGACGCGATCACTCTAGAGGAGCGATTCATCAAGTTGACCAAGATATGCGCCCACTTC : 15404 21 : ThrGlyMetTrpPro-----AsnGlnAsnAsnGlnIleLeuProAsnAsnCysGlyIleS : 39 :!!|||.!.||||||#####.!.|||!.! !:!!|||! ! ! ||| !..!:!! SerGlyPheTrpPro#####GluGlnThrValGluIleArgIleAlaAsnAsnAsnValH 15403 : TCCGGTTTCTGGCCATGGCAGAGCAAACTGTCGAAATACGTATCGCGAATAATAACGTAC : 15342 40 : erTyrIleTrpHisLeuGlnGlnValAla{A} >>>> Target Intron 1 >>>> : 49 !:!! !!::||| !...! !|||{.} 735 bp isHisArgPheHisGlySerLeuHisAla{G}++ + 15341 : ACCATCGTTTTCACGGTTCTCTTCACGCA{G}gt.........................a : 14578 50 : {rg}ValValArgPhePheSerLeuThrValLeuIleGlnGlnLeuGlyPheLeuLeuG : 68 {.!}|||||| !!|||||||||||| !|||||||||.!.||||||..!|||!!! !! -{lu}ValValCysPhePheSerLeuAspValLeuIleAspGlnLeuSerPhePheGlyA 14577 : c{AA}GTAGTGTGTTTCTTCAGTTTGGACGTTCTTATAGATCAACTATCATTTTTTGGTG : 14520 69 : lyGlyIleLeuLeuLeuAlaLysGlnSerAlaTyrValGlyHisLysAlaLys >>>> : 86 .!|||! ! !:!!||| !||||||.!! !|||:!!! ! !|||! !:!! laGlySerGlyValLeuLeuLysGlnGlyAsnTyrIleValPheLysGluGlu++ 14519 : CGGGAAGCGGGGTACTGTTGAAACAGGGGAACTACATCGTCTTTAAAGAGGAGgt..... : 14464 87 : Target Intron 2 >>>> PheGluThrLeuLeuHisGlyMetPheAsnAspTrpGl : 98 90 bp !:!|||:!!|||:!! !||| |||||||||.. ++TyrGluSerLeuIleSerGlyAlaArgAsnAspTrpSe 14463 : ....................agTACGAGTCGCTTATTAGCGGTGCCAGGAACGACTGGTC : 14340 99 : uAlaValArgProLysGluGluValAlaIleMetThrSerTyrMetAspArgGlyAlaPh : 118 ! !! !||||||:!!! !|||:!!! !|||||||||!.!||| !!:||||||||||| rIleGluArgProGlnGlyGluIleAspIleMetThrLysTyrAlaGluArgGlyAlaPh 14339 : GATCGAGAGACCACAAGGGGAGATCGACATTATGACTAAATACGCCGAGAGGGGtgcttt : 14280 119 : eIleValLeuIleTyrAla{V} >>>> Target Intron 3 >>>> {al}AsnVa : 127 |:::::: ||| !{!} 65 bp {.!}|||!. eLeuIleSerThrTyrLeu{A}++ ++{la}AsnAl 14279 : tttaatttcgacaTACCTT{G}gt.........................ag{CG}AACGC : 14188 128 : lPheGlyCysThrLeuLeuPheIleAsnMetProTrpLeuProArgIleAlaAspIleLe : 147 !.!!! !|||..!:!!||||||:!::::! !||| ! !|||!.!||| !|||||||| aIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLe 14187 : GATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTT : 14128 148 : uMetProLeuAsnThrSerArgAspArgLeuPheIleIleProAlaCysTyrPheValAs : 167 |:!:||| !||| !||||||||| ! !!:!||| !||||||! !||||||..!|| uLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAs 14127 : ACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTATCCGGCCTATTATTTCACCGA : 14068 168 : pGluAsnLysTyrTyrTyrTrpIleIleAlaHisMetThrIleIleIleIleThrAlaGl : 187 ||||:!!|||||| !! !::||||||.!!||||||.!! !:!:|||:!!..!!.! pGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPh 14067 : CGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTT : 14008 188 : ySerValTyrIleAlaCysAspThrCysPheIleTyrIleValGlnHisAlaCysGlyLe : 207 !! !||||||:!!|||||||||||| !!!:!||||||:!!|||||||||!.!|||||||| eTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLe 14007 : TTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATT : 13948 208 : uLeuGlyValAlaGly : 212 ||||!.!|||:!!||| uLeuAlaValSerGly 13947 : GTTGGCCGTGTCCGGg : 13931 vulgar: gi|383857245|ref|XP_003704115.1| 0 212 . LHQN01017803.1 15461 13930 - 425 M 25 75 F 0 5 M 23 69 S 0 1 5 0 2 I 0 731 3 0 2 S 1 2 M 36 108 5 0 2 I 0 86 3 0 2 M 39 117 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13931 15461 425 - . gene_id 1 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 15312 15461 . - . LHQN01017803.1 exonerate:protein2genome:local exon 15312 15461 . - . insertions 0 ; deletions 0 ; frameshifts 5 LHQN01017803.1 exonerate:protein2genome:local splice5 15310 15311 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 14577 15311 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 14577 14578 . - . intron_id 0 ; splice_site "AC" LHQN01017803.1 exonerate:protein2genome:local cds 14467 14576 . - . LHQN01017803.1 exonerate:protein2genome:local exon 14467 14576 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 14465 14466 . - . intron_id 2 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 14377 14466 . - . intron_id 2 LHQN01017803.1 exonerate:protein2genome:local splice3 14377 14378 . - . intron_id 1 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 14259 14376 . - . LHQN01017803.1 exonerate:protein2genome:local exon 14259 14376 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 14257 14258 . - . intron_id 3 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 14194 14258 . - . intron_id 3 LHQN01017803.1 exonerate:protein2genome:local splice3 14194 14195 . - . intron_id 2 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 13931 14193 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13931 14193 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13931 15461 425 - . alignment_id 1 ; Query gi|383857245|ref|XP_003704115.1| ; Align 15462 1 75 ; Align 15382 26 69 ; Align 14575 50 108 ; Align 14377 86 117 ; Align 14192 126 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 293 Query range: 282 -> 385 Target range: 28921 -> 28240 283 : SerGluLeuAspIleCysLeuGluPheTyrGlnGlyLeuGlyPheLeuValValGlnLeu : 302 ||| !:!!||| !|||:!!|||||||||:!! !! !!.!|||||||||||||||||| SerMetMetAspProCysMetGluPheTyrLysTyrCysAlaPheLeuValValGlnLeu 28921 : TCCATGATGGACCCTTGCATGGAGTTCTACAAGTATTGCGCTTTCTTGGTGGTGCAACTG : 28864 303 : MetHisLeuPhePheLeuThrLeuHisGlyGluPheValIleGluSerAsnAspLysAla : 322 :!:||||||.!!||||||:!!:!!!!.|||.!.||||||||| |||:!!|||! !.!! ValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleLeuSerHisAspMetThr 28863 : GTTCATTTGCTTTTCCTTTCTATCCAGGGACACTTTGTTATACTCTCGCATGACATGACT : 28804 323 : TyrAsnGln{Il} >>>> Target Intron 1 >>>> {e}TyrGluGlyLeuTrp : 331 |||:!!.!.{||} 133 bp {|}|||...!.! !||| TyrAspAsn{Il}++ ++{e}TyrSerAlaLysTrp 28803 : TACGACAAC{AT}gt.........................ag{A}TATAGCGCAAAATGG : 28644 332 : TyrAsnAlaAlaProLysAlaGlnAlaLeuTyrValLeuAlaLeuArgAlaSerAlaAla : 351 ||||||::!:!!|||!:!.!!|||.!!||||||||||||||||||||| !||| !.!! TyrAsnSerSerProArgThrGlnThrLeuTyrValLeuAlaLeuArgArgSerLeuThr 28643 : TACAACAGTTCGCCGAGAACGCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACT : 28584 352 : AlaProGlnIleThrAlaGlyGlyGlnIleProMetAsnLeuGluThrPheAlaVal > : 371 !!||| !:!!||||||||||||! !||| !!:!!||||||||||||||||||! ProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGlu++ 28583 : CCGCCATTGCTCACTGCGGGAGGACTGATTTCCTTGAATTTGGAGACTTTTGCCGaggt. : 28522 372 : >>> Target Intron 2 >>>> IleIleLysAlaSerValSerTyrPheThrMetL : 382 239 bp |||:!!|||||||||||||||:::||||||:!:: ++IleLeuLysAlaSerValSerPhePheThrValM 28521 : ........................agaTCTTAAAAGCAtccgtttcctttttcacgGTAA : 28252 383 : euLysSerThr : 385 !!||||||||| etLysSerThr 28251 : TGAAATCGACA : 28241 vulgar: gi|383857245|ref|XP_003704115.1| 282 385 . LHQN01017803.1 28921 28240 - 293 M 43 129 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 44 132 5 0 2 I 0 235 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 28241 28921 293 - . gene_id 2 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 28791 28921 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28791 28921 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 28789 28790 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 28658 28790 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 28658 28659 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 28525 28657 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28525 28657 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 28523 28524 . - . intron_id 2 ; splice_site "gt" LHQN01017803.1 exonerate:protein2genome:local intron 28286 28524 . - . intron_id 2 LHQN01017803.1 exonerate:protein2genome:local splice3 28286 28287 . - . intron_id 1 ; splice_site "ag" LHQN01017803.1 exonerate:protein2genome:local cds 28241 28285 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28241 28285 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 28241 28921 293 - . alignment_id 2 ; Query gi|383857245|ref|XP_003704115.1| ; Align 28922 283 129 ; Align 28657 327 132 ; Align 28286 371 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 268 Query range: 281 -> 384 Target range: 12843 -> 12394 282 : LeuSerGluLeuAspIleCysLeuGluPheTyrGlnGlyLeuGlyPheLeuValValGln : 301 :!!|||.!.! !!!:||| ! !|||||| !:!!! !! ! !|||:!!|||:!!||| ValSerAsnSerGluIleAsnAlaGluPheAlaLysAspCysThrPheIleValIleGln 12843 : GTGTCGAACTCGGAGATTAACGCGGAGTTTGCCAAGGATTGCACATTTATCGTGATTCAA : 12786 302 : LeuMetHisLeuPhePheLeuThrLeuHisGlyGluPheValIleGluSerAsnAspLys : 321 |||:!:|||:!!.!!!:!|||||||||!!.|||:!!|||||||||!!::!!|||!!::!! LeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAspAlaAsnGluGlu 12785 : TTGGTACACATACTTTACCTAACTCTTCAAGGACAATTCGTGATCGACGCGAACGAGGAA : 12726 322 : AlaTyrAsnGln{Il} >>>> Target Intron 1 >>>> {e}TyrGluGlyLeu : 330 !!:!.!...!{||} 62 bp {|}|||.!.!.!||| IlePheGluSer{Il}++ ++{e}TyrAsnAlaLeu 12725 : ATCTTCGAATCG{AT}gt.........................ag{A}TACAACGCTTTG : 12637 331 : TrpTyrAsnAlaAlaProLysAlaGlnAlaLeuTyrValLeuAlaLeuArgAlaSerAla : 350 |||||||||::!! ! !!:!.!!|||:!!|||!:!||||||||||||||| !!!! ! TrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeuArgAsnCysLeu 12636 : TGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCATTAAGAAATTGTCTA : 12577 351 : AlaAlaProGlnIleThrAlaGlyGlyGlnIleProMetAsnLeuGluThrPheAlaVal : 370 :!!||||||||||||||||||||||||! !||| !!|||||||||:!!!:!|||:!!! ! SerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGlnSerPheSerGlu 12576 : TCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAAAGTTTCTCAGAG : 12517 371 : >>>> Target Intron 2 >>>> IleIleLysAlaSerValSerTyrPheThrM : 381 78 bp |||:!!|||.!!||||||||||||!:!! !: ++ ++IleValLysThrSerValSerTyrTyrMetV 12516 : gt.........................agATTGTAAAGACGTCTGTCTCGTACTACATGG : 12406 382 : etLeuLysSer : 384 !:||||||||| alLeuLysSer 12405 : TACTGAAATCC : 12395 vulgar: gi|383857245|ref|XP_003704115.1| 281 384 . LHQN01017803.1 12843 12394 - 268 M 44 132 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 44 132 5 0 2 I 0 74 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 12395 12843 268 - . gene_id 3 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 12710 12843 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12710 12843 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 12708 12709 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 12648 12709 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 12648 12649 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 12515 12647 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12515 12647 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 12513 12514 . - . intron_id 2 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 12437 12514 . - . intron_id 2 LHQN01017803.1 exonerate:protein2genome:local splice3 12437 12438 . - . intron_id 1 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 12395 12436 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12395 12436 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 12395 12843 268 - . alignment_id 3 ; Query gi|383857245|ref|XP_003704115.1| ; Align 12844 282 132 ; Align 12647 327 132 ; Align 12437 371 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 262 Query range: 116 -> 212 Target range: 26276 -> 25988 117 : AlaPheIleValLeuIleTyrAlaValAsnValPheGlyCysThrLeuLeuPheIleAsn : 136 :!!||| ! !! !.!! ! .!!|||:!!:!!! !|||.!! !||||||!!: ! SerPheTyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCys 26276 : TCATTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGC : 26219 137 : MetProTrpLeuProArgIleAlaAspIleLeuMetProLeuAsnThrSerArgAspArg : 156 :!!|||!:::!! !!! !||| !||||||||||||||||||||| !!!!|||! ||| LeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArg 26218 : TTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGG : 26159 157 : LeuPheIleIleProAlaCysTyrPheValAspGluAsnLysTyrTyrTyrTrpIleIle : 176 ||||||:!! !||||||! !|||||||||||||||:!!||||||:!!|||! !|||:!! LeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleVal 26158 : TTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTA : 26099 177 : AlaHisMetThrIleIleIleIleThrAlaGlySerValTyrIleAlaCysAspThrCys : 196 !.!|||||| !:!!:!!:!::!!! ! ! !||||||!:! !|||||||||.!! ! GlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsn 26098 : GGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAAT : 26039 197 : PheIleTyrIleValGlnHisAlaCysGlyLeuLeuGlyValAlaGly : 212 !:!:!:||| !||||||||||||||||||||||||!.!:!!|||||| TyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 26038 : TACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 25989 vulgar: gi|383857245|ref|XP_003704115.1| 116 212 . LHQN01017803.1 26276 25988 - 262 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26276 262 - . gene_id 4 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26276 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26276 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26276 262 - . alignment_id 4 ; Query gi|383857245|ref|XP_003704115.1| ; Align 26277 117 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 230 Query range: 269 -> 385 Target range: 17736 -> 16903 270 : IleValThrAlaAlaPheSerAlaThrLeuAlaLeuLeuSerGluLeuAspIleCysLeu : 289 :!!::: ... |||||| !! !|||||| !! !|||.!! !:!! LeuIleCysGlyAsnPheSerLeuPheSerAsnGlnLeuSerThrSerAspPheAspIle 17736 : TTAAtctgtggaaatttttcactgttttcaaATCAGCTGAGTACGTCGGATTTCGACATA : 17679 290 : GluPheTyrGlnGlyLeuGlyPheLeuValValGlnLeuMetHisLeuPhePheLeuThr : 309 !!:||||||::! !! !.!!||| !:!! !|||||||||||||||||| !!:!!! ! AspPheTyrArgTyrCysSerPheThrLeuCysGlnLeuMetHisLeuPheValIleMet 17678 : GACTTCTACAGATATTGCAGTTTTACGTTGTGTCAACTGATGCACCTGTTCGTTATCATG : 17619 310 : LeuHisGlyGluPheValIleGluSerAsnAspLysAlaTyrAsnGln{Il} >>>> T : 326 |||!!.|||:!!||||||:!:!!:||| !!!:!:! !:!!.!. !{||} LeuGlnGlyGlnPheValLeuAspSerCysGluArgIleHisGluAla{Il}++ 17618 : CTTCAGGGACAGTTCGTGCTGGATTCGTGCGAGAGAATTCACGAGGCG{AT}gt...... : 17564 327 : arget Intron 1 >>>> {e}TyrGluGlyLeuTrpTyrAsnAlaAlaProLysAla : 338 402 bp {|}||||||..!|||||||||!..::!:!! !!|||.!! ++{e}TyrGluSerLeuTrpTyrThrSerSerSerLysThr 17563 : ...................ag{A}TACGAATCATTATGGTACACAAGTTCTTCGAAAACA : 17130 339 : GlnAlaLeuTyrValLeuAlaLeuArgAlaSerAlaAlaAlaProGlnIleThrAlaGly : 358 |||||||||||||||:!!||||||||| !!:! !.!! !! !! :!!||||||||| GlnAlaLeuTyrValValAlaLeuArgArgAsnLeuThrProThrCysLeuThrAlaGly 17129 : CAAGCATTATACGTGGTAGCGTTACGAAGAAACCTAACACCTACCTGTTTAACGGCTGGC : 17070 359 : GlyGlnIleProMetAsnLeuGluThrPheAlaVal >>>> Target Intron 2 > : 371 ||| !:!:! !:!!|||:!!:!!!:!||||||! ! 83 bp GlyLeuValGlnLeuAsnMetGlnSerPheAlaGlu++ 17069 : GGTTTAGTGCAACTGAACATGCAAAGCTTCGCAGAGgt...................... : 17029 372 : >>> IleIleLysAlaSerValSerTyrPheThrMetLeuLysSerThr : 385 :!::!!||| !||||||||||||!:!|||:!!||||||!!!||| ++ValValLysMetSerValSerTyrTyrThrValLeuLysThrThr 17028 : ...agGTGGTAAAAATGTCCGTTTCCTATTATACGGTGTTGAAGACAACG : 16904 vulgar: gi|383857245|ref|XP_003704115.1| 269 385 . LHQN01017803.1 17736 16903 - 230 M 56 168 S 0 2 5 0 2 I 0 398 3 0 2 S 1 1 M 44 132 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 16904 17736 230 - . gene_id 5 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 17567 17736 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17567 17736 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 17565 17566 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 17165 17566 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 17165 17166 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 17032 17164 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17032 17164 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 17030 17031 . - . intron_id 2 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 16949 17031 . - . intron_id 2 LHQN01017803.1 exonerate:protein2genome:local splice3 16949 16950 . - . intron_id 1 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 16904 16948 . - . LHQN01017803.1 exonerate:protein2genome:local exon 16904 16948 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 16904 17736 230 - . alignment_id 5 ; Query gi|383857245|ref|XP_003704115.1| ; Align 17737 270 168 ; Align 17164 327 132 ; Align 16949 371 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 217 Query range: 121 -> 212 Target range: 18459 -> 18186 122 : IleTyrAlaValAsnValPheGlyCysThrLeuLeuPheIleAsnMetProTrpLeuPro : 141 |||!:! !!||||||!.!!:! !|||:!!!!!|||||||||.!.:!!||||||! ! !! IlePheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpSerThr 18459 : ATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGTCGACC : 18402 142 : ArgIleAlaAspIleLeuMetProLeuAsnThrSerArgAspArgLeuPheIleIlePro : 161 |||:!:!.!:!! ! !! ! !!! !|||! !!!!! !..! !! ! !!:!!:!!||| ArgLeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuProValValValPro 18401 : CGATTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCC : 18342 162 : AlaCysTyrPheValAspGluAsnLysTyrTyrTyrTrpIleIleAlaHisMetThrIle : 181 !.!! !||||||||||||||| :!!|||||||||!::|||||| !||| ||| ! GlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCys 18341 : GGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGC : 18282 182 : IleIleIleThrAlaGlySerValTyrIleAlaCysAspThrCysPheIleTyrIleVal : 201 ! !|||:!:! !!.!! ! !|||||| !|||||||||||| !!!:!!!: :!:||| ThrIleLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuVal 18281 : ACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTG : 18222 202 : GlnHisAlaCysGlyLeuLeuGlyValAlaGly : 212 ||||||.!!|||||||||!!!!.!||||||||| GlnHisThrCysGlyLeuPheAlaValAlaGly 18221 : CAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 18187 vulgar: gi|383857245|ref|XP_003704115.1| 121 212 . LHQN01017803.1 18459 18186 - 217 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18187 18459 217 - . gene_id 6 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18187 18459 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18187 18459 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18187 18459 217 - . alignment_id 6 ; Query gi|383857245|ref|XP_003704115.1| ; Align 18460 122 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 215 Query range: 116 -> 212 Target range: 29658 -> 29370 117 : AlaPheIleValLeuIleTyrAlaValAsnValPheGlyCysThrLeuLeuPheIleAsn : 136 ...||| ||| ! !|||!.!|||! !.!! !||| !:!!||||||! ! ThrPheSerSerLeuTyrValAlaAlaAsnGlyIlePheCysTyrValLeuPheThrAla 29658 : acattttcttctctataTGTCGCAGCAAATGGAATCTTCTGCTACGTTCTCTTCACCGCA : 29601 137 : MetProTrpLeuProArgIleAlaAspIleLeuMetProLeuAsnThrSerArgAspArg : 156 :!! !! !||||||:!! !|||:!!:!! !||| !||| !||||||! ! ValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyVal 29600 : GTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTG : 29541 157 : LeuPheIleIleProAlaCysTyrPheValAspGluAsnLysTyrTyrTyrTrpIleIle : 176 !|||||| !|||||| !||| !|||||||||.!.:!!:!!||||||!:::!:!!: GlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyrTyrTyrLeuMet 29540 : GGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTACTACTATCTGATG : 29481 177 : AlaHisMetThrIleIleIleIleThrAlaGlySerValTyrIleAlaCysAspThrCys : 196 !.!|||||| ! !:!:|||! !..!!.! !! !|||||||||:!!||||||||| ! GlyHisMetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThrIle 29480 : GGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATC : 29421 197 : PheIleTyrIleValGlnHisAlaCysGlyLeuLeuGlyValAlaGly : 212 !:!!!: !!|||||||||||||||||||||||||||..!:!!:!!||| TyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSerGly 29420 : TACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCTGGG : 29371 vulgar: gi|383857245|ref|XP_003704115.1| 116 212 . LHQN01017803.1 29658 29370 - 215 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29371 29658 215 - . gene_id 7 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29371 29658 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29371 29658 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 29371 29658 215 - . alignment_id 7 ; Query gi|383857245|ref|XP_003704115.1| ; Align 29659 117 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 173 Query range: 326 -> 384 Target range: 22422 -> 22171 327 : TyrGluGlyLeuTrpTyrAsnAlaAlaProLysAlaGlnAlaLeuTyrValLeuAlaLeu : 346 ||||||..! !|||||||||:!!:!! !|||.!!||||||||||||:!!||||||||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeu 22422 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTA : 22365 347 : ArgAlaSerAlaAlaAlaProGlnIleThrAlaGlyGlyGlnIleProMetAsnLeuGlu : 366 |||::!||| ! ! !!||| !:!!|||||||||||| ||| !!:!!||||||:!! ArgSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLys 22364 : CGGAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAG : 22305 367 : ThrPheAlaVal >>>> Target Intron 1 >>>> IleIleLysAlaSerValS : 377 ||||||:!!! ! 77 bp |||||||||:!!||||||| ThrPheSerGlu++ ++IleIleLysSerSerValS 22304 : ACCTTCTCAGAGgt.........................agATTATAAAATCATCCGTGT : 22195 378 : erTyrPheThrMetLeuLysSer : 384 |||||!:!|||:!!:!!:!!||| erTyrTyrThrValMetGlnSer 22194 : CTTACTATACGGTGATGCAATCG : 22172 vulgar: gi|383857245|ref|XP_003704115.1| 326 384 . LHQN01017803.1 22422 22171 - 173 M 44 132 5 0 2 I 0 73 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 22172 22422 173 - . gene_id 8 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 22291 22422 . - . LHQN01017803.1 exonerate:protein2genome:local exon 22291 22422 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 22289 22290 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 22214 22290 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 22214 22215 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 22172 22213 . - . LHQN01017803.1 exonerate:protein2genome:local exon 22172 22213 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 22172 22422 173 - . alignment_id 8 ; Query gi|383857245|ref|XP_003704115.1| ; Align 22423 327 132 ; Align 22214 371 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 136 Query range: 326 -> 380 Target range: 25043 -> 24881 327 : TyrGluGlyLeuTrpTyrAsnAlaAlaProLysAlaGlnAlaLeuTyrValLeuAlaLeu : 346 ||||||..! !|||||||||:!!:!! !|||.!!||||||||||||:!!||||||||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeu 25043 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTA : 24986 347 : ArgAlaSerAlaAlaAlaProGlnIleThrAlaGlyGlyGlnIleProMetAsnLeuGlu : 366 |||::!||| ! ! !!||| !:!!|||||||||||| ||| !!:!!||||||:!! ArgSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLys 24985 : CGGAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAG : 24926 367 : ThrPheAlaValIleIleLysAlaSerValSerTyrPheThr : 380 ||||||:!!! !:!!! !:! ! !:!!..! !!!:!:!! ThrPheSerGluValThrArgArgLeuIleGlnAspTyrSer 24925 : ACCTTCTCAGAGGTAACGAGGCGACTAATACAAGATTACTCG : 24882 vulgar: gi|383857245|ref|XP_003704115.1| 326 380 . LHQN01017803.1 25043 24881 - 136 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 24882 25043 136 - . gene_id 9 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 24882 25043 . - . LHQN01017803.1 exonerate:protein2genome:local exon 24882 25043 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 24882 25043 136 - . alignment_id 9 ; Query gi|383857245|ref|XP_003704115.1| ; Align 25044 327 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 326 -> 371 Target range: 475 -> 340 327 : TyrGluGlyLeuTrpTyrAsnAlaAlaProLysAlaGlnAlaLeuTyrValLeuAlaLeuArgA : 348 |||!!:!.!:!!|||||||||::!.!!! !::!:!!||| !||||||:!!|||||||||||| TyrAspAlaValTrpTyrAsnSerThrGlnArgSerGlnIleLeuTyrLeuLeuAlaLeuArgA 475 : TACGATGCAGTATGGTACAACAGTACGCAGCGATCGCAAATTTTGTACCTGTTAGCTTTAAGGA : 412 349 : laSerAlaAlaAlaProGlnIleThrAlaGlyGlyGlnIleProMetAsnLeuGluThrPheAl : 369 !||| !.!! !!|||! !:!!:!!|||||||||! !||| !!:!!|||:!!|||||||||:! rgSerLeuThrProProLeuLeuSerAlaGlyGlyLeuIleSerLeuAsnMetGluThrPheSe 411 : GGTCTTTAACTCCACCACTGCTTTCTGCAGGAGGACTGATTTCGTTGAATATGGAAACTTTTTC : 349 370 : aValIle : 371 ! !:!! rLysVal 348 : GAAGGTA : 341 vulgar: gi|383857245|ref|XP_003704115.1| 326 371 . LHQN01017803.1 475 340 - 124 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 341 475 124 - . gene_id 10 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 341 475 . - . LHQN01017803.1 exonerate:protein2genome:local exon 341 475 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 341 475 124 - . alignment_id 10 ; Query gi|383857245|ref|XP_003704115.1| ; Align 476 327 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754729|ref|XP_012138996.1| PREDICTED: uncharacterized protein LOC100875216 [Megachile rotundata] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 134 Query range: 132 -> 253 Target range: 26261 -> 25901 133 : PheTyrArgValThrLeuIleLeuAlaAlaLeuValPheIleTyrIleProLeuIleAsn : 152 ||| ! ! !||| !:!! |||..!||| !:!!|||!!:! !:!:|||!!!:!:::: PheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSer 26261 : TTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCG : 26204 153 : ProThrLeuAspLeuIleMetProIleAsnGlyThrArgProLysGlnGlnLeuPheGly : 172 |||! !||||||:!!:!!||||||:!:|||! !|||||| !!::! ! :!!!:! ! ProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrPro 26203 : CCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCA : 26144 173 : AlaCysTyrValPheValGluAlaAspAspHisPheAlaAlaValPheLeuHisLeuGly : 192 ||| ||| !||||||!!:! !||| ! :!! ! ! !:!! ! !|||:!! ! Ala---TyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyr 26143 : GCT---TACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTAT : 26087 193 : TrpThrThrPheValThrValTyrAsnValSerIleValAspSerLeuTyrIleLeuIle : 212 ..!..! ! :!! !:!!! ! ! !!!!! ! !|||:!! !|||:!:! ! ! LeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAla 26086 : CTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCC : 26027 213 : IleHisHisValCysGlyLeuPheAspValCysGlyTyrGlnIleGluThrAlaThrGln : 232 :!:!!.|||!.!|||||||||!!.! !:!!...|||!! !:!!:!! ! ! !..! ValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMet 26026 : GTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATG : 25967 233 : AspProGluMetArgTyrAspGlnPheLysGlnCysValMetThrHisHisLysAlaLeu : 252 !!: !! .!.! !||| .!.||| ! ! !:!:.!!.!.:!!!!...!||| GluAsnGlyPheLeuTyrArgAsnPheValGlyPheCysLeuAlaGluAsnAsnCysLeu 25966 : GAAAATGGTTTTCTTTATAGAAATTTCGTTGGCTTTTGTTTAGCTGAAAACAATTGTCTG : 25907 253 : Leu : 253 ||| Leu 25906 : TTG : 25902 vulgar: gi|805754729|ref|XP_012138996.1| 132 253 . LHQN01017803.1 26261 25901 - 134 M 41 123 G 1 0 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25902 26261 134 - . gene_id 1 ; sequence gi|805754729|ref|XP_012138996.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25902 26261 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25902 26261 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25902 26261 134 - . alignment_id 1 ; Query gi|805754729|ref|XP_012138996.1| ; Align 26262 133 123 ; Align 26139 175 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752277|ref|XP_012143815.1| PREDICTED: uncharacterized protein LOC100879096 [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 85 -> 130 Target range: 479691 -> 479826 86 : PheSerSerAsnTrpTyrGluIleProValLysPheGlnLysLeuLeuTyrThrMetI : 105 |||!:!|||||||||||||||! ! !!:!!! !.!!||||||:!!||||||||||||: PheAsnSerAsnTrpTyrGluThrSerLeuThrIleGlnLysMetLeuTyrThrMetV 479692 : TTTAACAGCAATTGGTATGAAACTTCCTTAACGATCCAGAAAATGTTGTACACCATGG : 479749 106 : leIleArgCysAsnArgProCysIleLeuSerAlaGlyGlyLeuTyrAspMetAsnIl : 124 !::!:||| !!!:!!:! !! :!!:!!!!! ! !|||!!!||| !! !::!:! alLeuArgSerSerLysSerMetLeuValThrPhePheGlyPheTyrTyrAlaSerVa 479750 : TGTTGAGAAGCAGTAAATCAATGCTTGTTACGTTTTTCGGGTTTTACTACGCGTCTGT : 479806 125 : eGluAsnPheGlyLysVal : 130 ::!!..!|||..!..!||| lGlnGlyPheSerSerVal 479807 : GCAAGGTTTTTCATCGGTA : 479826 vulgar: gi|805752277|ref|XP_012143815.1| 85 130 . KQ414815.1 479691 479826 + 105 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 479692 479826 105 + . gene_id 1 ; sequence gi|805752277|ref|XP_012143815.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 479692 479826 . + . KQ414815.1 exonerate:protein2genome:local exon 479692 479826 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 479692 479826 105 + . alignment_id 1 ; Query gi|805752277|ref|XP_012143815.1| ; Align 479692 86 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 142 -> 212 Target range: 485722 -> 485932 143 : IleAlaAspIleLeuMetProLeuAsnThrSerArgAspArgLeuPheIleIleProA : 162 ||| !|||||||||!!:||||||||| !!!!||| ||| !.!! !||| !: IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 163 : laCysTyrPheValAspGluAsnLysTyrTyrTyrTrpIleIleAlaHisMetThrIl : 181 !! :!!|||||||||:!!.!.||||||!:!||| ||| !||||||:!:..!:! erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 182 : eIleIleIleThrAlaGlySerValTyrIleAlaCysAspThrCysPheIleTyrIle : 200 !.!!:!!|||! !!.!!.!! !|||! :!!::! ::: ...::: ||| uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 201 : ValGlnHisAlaCysGlyLeuLeuGlyValAlaGly : 212 :!!||||||.!!|||||||||! ! !:!!!.!||| IleGlnHisThrCysGlyLeuTyrThrIleValGly 485895 : ATACAGCACACCTGTGGTTTGTATACAATCGTTGGG : 485932 vulgar: gi|383857245|ref|XP_003704115.1| 142 212 . KQ414815.1 485722 485932 + 147 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485932 147 + . gene_id 1 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485932 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485932 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485932 147 + . alignment_id 1 ; Query gi|383857245|ref|XP_003704115.1| ; Align 485723 143 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 117 -> 224 Target range: 448016 -> 448337 118 : PheIleValLeuIleTyrAlaValAsnValPheGlyCysThrLeuLeuPheIleAsnM : 137 |||::::::... :::||| !! ! !! ! !:!! !|||! ! : PheLeuIlePheThrIleSerValValPheAlaLeuSerLeuIleSerPheThrLeuV 448017 : tttctcattttcacaatttcagtGGTGTTTGCCTTGTCTTTAATTAGCTTTACCTTGG : 448074 138 : etProTrpLeuProArgIleAlaAspIleLeuMetProLeuAsnThrSerArgAspAr : 156 !: !!:::!! !...... |||||||||||||||:!!|||..!|||! ! !. alGluPheValValHisPheLeuAspIleLeuMetProMetAsnValSerThrArgHi 448075 : TTGAGTTCGTGGTAcattttctcgatattttaATGCCAATGAACGTATCTACACGGCA : 448131 157 : gLeuPheIleIleProAlaCysTyrPheValAspGluAsnLysTyrTyrTyrTrpIle : 175 ! !.!. !.!!! ! ! ! !||| !|||:!!:!!|||!:!!:!:!!!::||| sGluLeuProPheLeuIleGlnCysPheCysAspGlnAspLysPhePheHisTyrIle 448132 : CGAGCTACCCTTCCTAATTCAATGTTTCTGTGATCAAGATAAATTCTTCCACTATATA : 448188 176 : IleAlaHisMetThrIleIleIleIleThrAlaGlySerValTyrIleAlaCysAspT : 195 :!!!.! !:!!! !:!!:!!! !||| !!.!||||||||| :!!||| ! | LeuValPheLeuIleValLeuThrIleLeuGlyGlySerValValLeuAlaThrThrT 448189 : TTAGTTTTCTTGATCGTTCTCACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAA : 448248 196 : hrCysPheIleTyrIleValGlnHisAlaCysGlyLeuLeuGlyValAlaGlyTyrAr : 214 || !!:!:!: .!! !||||||..!|||||||||!!! !:!!||||||!! .. hrThrTyrLeuIlePheSerGlnHisCysCysGlyLeuPheLysIleAlaGly***Gl 448249 : CGACTTACTTGATATTCAGTCAACATTGTTGTGGATTGTTCAAAATTGCAGGGTAAGA : 448305 215 : gPheLysGluAlaValAspGluMetSerLys : 224 !.!!! ! |||:!! ::: ...||| uIleMetThrAlaMetPheAspThrLysLys 448306 : AATTATGACTGCTATGtttgatacaaaaaaa : 448337 vulgar: gi|383857245|ref|XP_003704115.1| 117 224 . KQ414815.1 448016 448337 + 133 M 107 321 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448017 448337 133 + . gene_id 2 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448017 448337 . + . KQ414815.1 exonerate:protein2genome:local exon 448017 448337 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448017 448337 133 + . alignment_id 2 ; Query gi|383857245|ref|XP_003704115.1| ; Align 448017 118 321 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752280|ref|XP_012143908.1| PREDICTED: uncharacterized protein LOC100878986 isoform X1 [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 94 -> 179 Target range: 464585 -> 464840 95 : LeuLeuSerPheLeuMetValPheIleAlaIleProLeuIleProProAlaLeuAspI : 114 !!!:!! !! !!:!!:!! !!.!! ! !:!! !:!!:!:||| ! !||||||: PheIleProValIleLeuPheIleCysLeuLeuGluValLeuProAspIleLeuAspV 464586 : TTCATTCCCGTTATACTGTTCATCTGTTTACTCGAAGTATTGCCAGATATTCTCGACG : 464643 115 : leIleAlaProLeuAsnValThrArgProArgGlnProMetPheArgAlaAsnTyrVa : 133 !::!!||||||||||||! !:!!||| !!!.!||| !:!:.!!! !|||.!.!:! ! alValAlaProLeuAsnGluSerArgSerHisGlnTyrLeuIleThrAlaGluPhePh 464644 : TGGTTGCGCCCCTCAATGAATCTCGTTCTCATCAATACTTAATTACCGCGGAATTTTT : 464700 134 : lIleIleLysValAspAspHisPhePheValThrTyrValHisMetAlaSerValAla : 152 !|||! ! ! !... :!!!:!.!!||||||! !||| !! !! !! !..! ! eIleThrAspSerSerProAsnTyrIleValThrCysValGlyThrAspIleThrLeu 464701 : CATCACTGATAGTTCGCCGAATTATATCGTAACTTGTGTTGGTACGGATATTACTCTT : 464757 153 : SerLeuGlyValPheIleIleValThrValAspSerLeuTyrMetLeuIleIleHisH : 172 ! !:!!|||||| ! !|||:!!.!! !!!:!!!!!! !.!.|||:!::!:!!.| IleMetGlyValThrThrIleIleAlaSerGluThrPheThrPheLeuLeuLeuGlnH 464758 : ATCATGGGAGTCACGACAATAATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGCAAC : 464817 173 : isAlaCysGlyLeuPheAspVal : 179 || !|||!.!:!!||| ! :!! isIleCysAlaMetPheLysIle 464818 : ATATCTGCGCAATGTTCAAAATC : 464840 vulgar: gi|805752280|ref|XP_012143908.1| 94 179 . KQ414815.1 464585 464840 + 112 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464586 464840 112 + . gene_id 1 ; sequence gi|805752280|ref|XP_012143908.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464586 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464586 464840 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464586 464840 112 + . alignment_id 1 ; Query gi|805752280|ref|XP_012143908.1| ; Align 464586 95 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752301|ref|XP_012144307.1| PREDICTED: uncharacterized protein LOC100878986 isoform X5 [Megachile rotundata] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 94 -> 179 Target range: 464585 -> 464840 95 : LeuLeuSerPheLeuMetValPheIleAlaIleProLeuIleProProAlaLeuAspI : 114 !!!:!! !! !!:!!:!! !!.!! ! !:!! !:!!:!:||| ! !||||||: PheIleProValIleLeuPheIleCysLeuLeuGluValLeuProAspIleLeuAspV 464586 : TTCATTCCCGTTATACTGTTCATCTGTTTACTCGAAGTATTGCCAGATATTCTCGACG : 464643 115 : leIleAlaProLeuAsnValThrArgProArgGlnProMetPheArgAlaAsnTyrVa : 133 !::!!||||||||||||! !:!!||| !!!.!||| !:!:.!!! !|||.!.!:! ! alValAlaProLeuAsnGluSerArgSerHisGlnTyrLeuIleThrAlaGluPhePh 464644 : TGGTTGCGCCCCTCAATGAATCTCGTTCTCATCAATACTTAATTACCGCGGAATTTTT : 464700 134 : lIleIleLysValAspAspHisPhePheValThrTyrValHisMetAlaSerValAla : 152 !|||! ! ! !... :!!!:!.!!||||||! !||| !! !! !! !..! ! eIleThrAspSerSerProAsnTyrIleValThrCysValGlyThrAspIleThrLeu 464701 : CATCACTGATAGTTCGCCGAATTATATCGTAACTTGTGTTGGTACGGATATTACTCTT : 464757 153 : SerLeuGlyValPheIleIleValThrValAspSerLeuTyrMetLeuIleIleHisH : 172 ! !:!!|||||| ! !|||:!!.!! !!!:!!!!!! !.!.|||:!::!:!!.| IleMetGlyValThrThrIleIleAlaSerGluThrPheThrPheLeuLeuLeuGlnH 464758 : ATCATGGGAGTCACGACAATAATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGCAAC : 464817 173 : isAlaCysGlyLeuPheAspVal : 179 || !|||!.!:!!||| ! :!! isIleCysAlaMetPheLysIle 464818 : ATATCTGCGCAATGTTCAAAATC : 464840 vulgar: gi|805752301|ref|XP_012144307.1| 94 179 . KQ414815.1 464585 464840 + 112 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464586 464840 112 + . gene_id 1 ; sequence gi|805752301|ref|XP_012144307.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464586 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464586 464840 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464586 464840 112 + . alignment_id 1 ; Query gi|805752301|ref|XP_012144307.1| ; Align 464586 95 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752326|ref|XP_012144983.1| PREDICTED: uncharacterized protein LOC100878543 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 229 Query range: 0 -> 125 Target range: 1234257 -> 1233669 1 : MetProIleAsnGlyThrArgProLysGluProLeuPheGlyValCysTyrValPh : 19 :!:|||:!!|||! !|||||||||::!:!!! ! !||| !!||| !|||:!!!: LeuProLeuAsnGluThrArgProArgGlnGlnGlyPheArgValAsnTyrLeuTy 1234257 : CTTCCGTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTATA : 1234203 20 : eMetLysAlaAspAspHisPheAlaAlaValPheLeuHisLeuGlyTrpThrThrP : 38 !.!. ! ! !! |||:!!||| !::!|||!:!!!!!!.|||!.!||| !.!! rPheAspGluAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaV 1234202 : TTTCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAG : 1234146 39 : heValThrValTyrAsnValSerIleValAspSerLeuTyrIleLeuIleIleHis : 56 !!|||..!||| ! !:!!! !! !|||||||||||||||!!::!!||||||||| alValValValMetIleIleIleThrValAspSerLeuTyrMetIleIleIleHis 1234145 : TCGTTGTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGATAATAATTCAC : 1234092 57 : HisValCysGlyMetPheAspValCys{Gl} >>>> Target Intron 1 >> : 66 |||!.! !!|||||||||! !||||||{||} 118 bp HisAlaSerGlyMetPheAlaValCys{Gl}++ 1234091 : CATGCCAGCGGAATGTTCGCCGTGTGC{GG}gt....................... : 1234058 67 : >> {y}TyrGlnIleGluThrAlaThrGlnGluProGluLeuArgTyrAspGlnP : 83 {|} !!..!||| ! ! ! ! ... !.!.! !! !:!!!!:|||| +-{y}AspSerIleTyrGlyAsnAspIleSerGluAsnHisThrHisGluGlnP 1234057 : ..aa{G}GACTCAATCTATGGCAATGACATTTCTGAGAATCATACGCACGAACAGT : 1233893 84 : heLysGlnCysValMetThrHisHisLysAlaLeu{Le} >>>> Target Int : 95 |||||!:!||||||! |||||| !!||||||:!!{ } 95 bp heLysArgCysValThrThrHisAspLysAlaIle{Gl}++ 1233892 : TCAAACGATGCGTGACTACGCACGATAAAGCTATC{GA}gt............... : 1233853 96 : ron 2 >>>> {u}PhePheAspLysLeuGlnGluCysSerGlnAsnMetPheLe : 109 {!}|||!:!|||! |||.!.||| !!|||!:!|||! !:!|| ++{u}PheTyrAspIleLeuAsnGluSerSerArgAsnSerTyrLe 1233852 : ..........ag{G}TTTTACGATATTCTAAACGAGAGCAGTCGAAATAGCTACTT : 1233720 110 : uLeuLeuValAlaLeuAsnMetIleLeuIleSerMetThrAlaValGln : 125 |:!!! !|||!.!|||||||||!!: !||||||:!!|||||||||||| uIleGlnValGlyLeuAsnMetMetGlyIleSerValThrAlaValGln 1233719 : GATTCAGGTTGGATTGAACATGATGGGCATTAGCGTGACCGCTGTCCAG : 1233670 vulgar: gi|805752326|ref|XP_012144983.1| 0 125 . KQ414851.1 1234257 1233669 - 229 M 65 195 S 0 2 5 0 2 I 0 114 3 0 2 S 1 1 M 28 84 S 0 2 5 0 2 I 0 91 3 0 2 S 1 1 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233670 1234257 229 - . gene_id 1 ; sequence gi|805752326|ref|XP_012144983.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1234061 1234257 . - . KQ414851.1 exonerate:protein2genome:local exon 1234061 1234257 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234059 1234060 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233943 1234060 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233943 1233944 . - . intron_id 0 ; splice_site "AA" KQ414851.1 exonerate:protein2genome:local cds 1233856 1233942 . - . KQ414851.1 exonerate:protein2genome:local exon 1233856 1233942 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233854 1233855 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233761 1233855 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1233761 1233762 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233670 1233760 . - . KQ414851.1 exonerate:protein2genome:local exon 1233670 1233760 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233670 1234257 229 - . alignment_id 1 ; Query gi|805752326|ref|XP_012144983.1| ; Align 1234258 1 195 ; Align 1233942 67 84 ; Align 1233760 96 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752326|ref|XP_012144983.1| PREDICTED: uncharacterized protein LOC100878543 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 181 Query range: 0 -> 125 Target range: 1229422 -> 1228834 1 : MetProIleAsnGlyThrArgProLysGluProLeuPheGlyValCysTyrValPh : 19 :!:||| !|||! !|||||||||::!:!!! !|||||| !!||| !|||:!!.! LeuProSerAsnGluThrArgProArgGlnGlnLeuPheArgValAsnTyrIleIl 1229422 : CTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAAT : 1229368 20 : eMetLysAlaAspAspHisPheAlaAlaValPheLeuHisLeuGlyTrpThrThrP : 38 !.!. ! !! |||:!!||| ! !|||!:!:!!!!.||| !||| !|||. ePheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPheTrpCysThrI 1229367 : TTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACAA : 1229311 39 : heValThrValTyrAsnValSerIleValAspSerLeuTyrIleLeuIleIleHis : 56 !!||| !||| !:!!! !! !|||||||||||||||!!::!!||||||:!! leValLeuValMetAlaIleIleThrValAspSerLeuTyrMetIleIleIleTyr 1229310 : TCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGATCATAATTTAC : 1229257 57 : HisValCysGly{Me} >>>> Target Intron 1 >>>> {t}PheAspVa : 64 |||!.! !!|||{!!} 213 bp {:}!:!.!.|| HisAlaSerGly{Il}++ ++{e}TyrGlnVa 1229256 : CATGCCAGCGGA{AT}gt.........................ag{C}TATCAAGT : 1229020 65 : lCysGlyTyrGlnIleGluThrAlaThrGlnGluProGluLeuArgTyrAspGlnP : 83 |||| ! !!|||||| !||| !! !:!! ! !|||! ! ! ! !! lCysThrAspGlnIleMetThrIleIleLysTyrAsnGlu***LeuAlaArgLeuL 1229019 : TTGCACTGATCAAATAATGACAATAATAAAGTATAATGAATAATTAGCCCGATTAT : 1228963 84 : heLysGlnCysValMetThrHisHisLysAlaLeuLeuPhePheAspLysLeuGln : 101 !.|||! ! ! !:!! ! ! ! ! !! ! !|||!:!|||! |||.!. euLysProThrAsnLeuCysPheCysTyrIleSerArgPheTyrAspIleLeuAsn 1228962 : TGAAACCGACTAACTTGTGCTTTTGTTACATTTCCAGGTTTTACGATATTCTAAAC : 1228909 102 : GluCysSerGlnAsnMetPheLeuLeuLeuValAlaLeuAsnMetIleLeuIleSe : 120 ||| !!|||!:!|||! !:!||||||! !|||!.!|||!:!|||!!: !||||| GluSerSerArgAsnSerTyrLeuLeuGlnValGlyLeuSerMetMetSerIleSe 1228908 : GAGAGCAGTCGAAACAGCTACTTGCTTCAGGTTGGATTGAGCATGATGAGCATCAG : 1228852 121 : rMetThrAlaValGln : 125 |:!!|||||||||||| rValThrAlaValGln 1228851 : CGTGACTGCTGTGCAG : 1228835 vulgar: gi|805752326|ref|XP_012144983.1| 0 125 . KQ414851.1 1229422 1228834 - 181 M 60 180 S 0 2 5 0 2 I 0 209 3 0 2 S 1 1 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228835 1229422 181 - . gene_id 2 ; sequence gi|805752326|ref|XP_012144983.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1229241 1229422 . - . KQ414851.1 exonerate:protein2genome:local exon 1229241 1229422 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1229239 1229240 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1229028 1229240 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1229028 1229029 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228835 1229027 . - . KQ414851.1 exonerate:protein2genome:local exon 1228835 1229027 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228835 1229422 181 - . alignment_id 2 ; Query gi|805752326|ref|XP_012144983.1| ; Align 1229423 1 180 ; Align 1229027 62 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752326|ref|XP_012144983.1| PREDICTED: uncharacterized protein LOC100878543 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 177 Query range: 1 -> 128 Target range: 1243791 -> 1243074 2 : ProIleAsnGlyThrArgProLysGluProLeuPheGlyValCysTyrValPheMe : 20 |||:!!|||! !|||||| !!::! ! :::... ::: |||:!!||| ProLeuAsnGluThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPhe-- 1243791 : CCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTC-- : 1243737 21 : tLysAlaAspAspHisPheAlaAlaValPheLeuHisLeuGlyTrpThrThrPheV : 39 ! ::: :::||| ::::::::::!!:!! !|||||| !:!!|||: -AspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheM 1243736 : -GACAtggagaagaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCA : 1243683 40 : alThrValTyrAsnValSerIleValAspSerLeuTyrIleLeuIleIleHisHis : 57 !!|||:!! !:!!! !! !:!!|||:!!||||||:!::!!|||||||||||| etThrMetMetValIleIleThrIleAspAlaLeuTyrValValIleIleHisHis 1243682 : TGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCAC : 1243629 58 : ValCysGlyMetPheAspValCys{Gl} >>>> Target Intron 1 >>>> : 66 ..!||||||:!:|||! !||||||{||} 342 bp ThrCysGlyLeuPheAlaValCys{Gl}++ + 1243628 : ACGTGTGGCTTATTCGCTGTTTGC{GG}gt.........................a : 1243260 67 : {y}TyrGlnIleGluThrAlaThrGlnGluProGluLeuArgTyrAspGlnPheL : 84 {|}|||.!.||| ::: :::::: ::: ||| .!. !||| +{y}TyrAsnIle***SerLeuLysLysLysLysLys***ArgValGlnThrPheL 1243259 : g{T}TACAATATTtagtcgttaaaaaaaaaaaagaaataacgagTACAAACATTTC : 1243206 85 : ysGlnCysValMetThrHisHisLysAlaLeuLeuPhePheAspLysLeuGlnGlu : 102 !::! |||::: ||| ! !!! !! !||||||! :!!.!.||| euArgPheValIlePheIleHisAsp---PheSerSerPheAspThrIleAsnGlu 1243205 : TAAGGttcgttatttttatacatgAT---TTCAGCTCTTTCGATACCATAAACGAA : 1243155 103 : CysSerGlnAsnMetPheLeuLeuLeuValAlaLeuAsnMetIleLeuIleSerMe : 121 !!!!...!.. !:!|||!!!! !|||!.!|||||||||||| !||||||:! IleThrSerThrCysTyrLeuPheGlnValGlyLeuAsnMetIleGlyIleSerVa 1243154 : ATCACTAGCACATGTTACTTGTTTCAAGTCGGACTTAATATGATCGGTATTAGCGT : 1243098 122 : tThrAlaValGlnValAsnMet : 128 !|||:!!|||! !|||!..!!: lThrSerValLeuValArgIle 1243097 : GACGTCTGTTCTAGTAAGAATT : 1243075 vulgar: gi|805752326|ref|XP_012144983.1| 1 128 . KQ414851.1 1243791 1243074 - 177 M 18 54 G 1 0 M 45 135 S 0 2 5 0 2 I 0 338 3 0 2 S 1 1 M 26 78 G 1 0 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243075 1243791 177 - . gene_id 3 ; sequence gi|805752326|ref|XP_012144983.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1243601 1243791 . - . KQ414851.1 exonerate:protein2genome:local exon 1243601 1243791 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local splice5 1243599 1243600 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243259 1243600 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1243259 1243260 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1243075 1243258 . - . KQ414851.1 exonerate:protein2genome:local exon 1243075 1243258 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243075 1243791 177 - . alignment_id 3 ; Query gi|805752326|ref|XP_012144983.1| ; Align 1243792 2 54 ; Align 1243738 21 135 ; Align 1243258 67 78 ; Align 1243180 94 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752326|ref|XP_012144983.1| PREDICTED: uncharacterized protein LOC100878543 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 1 -> 66 Target range: 1240016 -> 1239821 2 : ProIleAsnGlyThrArgProLysGluProLeuPheGlyValCysTyrValPheMe : 20 |||:!!|||! !|||||| !!:::::: :::||| ||| !|||:!!.!!!! ProLeuAsnGluThrArgAlaArgGlnLysIlePheLysValAsnTyrLeuIleIl 1240016 : CCTTTAAACGAAACCCGAGCACgccagaaaatattcaaagttaaTTACCTGATCAT : 1239962 21 : tLysAlaAspAspHisPheAlaAlaValPheLeuHisLeuGlyTrpThrThrPheV : 39 : ! !|||!!:!!. ! ! !..!!:!!!!||||||..!|||||||||.!!. eAspArgAspGluGlnAlaLeuIleThrTyrPheHisLeuSerTrpThrThrIleT 1239961 : TGACAGGGATGAACAAGCTCTGATCACATATTTTCACTTGTCTTGGACAACTATCA : 1239905 40 : alThrValTyrAsnValSerIleValAspSerLeuTyrIleLeuIleIleHisHis : 57 .! !! ! ::!||| !! ! !!!:! !:!!|||:!!|||:!!||||||||| hrLeuGlyIleSerValLeuSerSerGluLeuIleTyrValLeuLeuIleHisHis 1239904 : CTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGTCCTTCTTATTCATCAT : 1239851 58 : ValCysGlyMetPheAspValCysGly : 66 ..! !!|||:!!|||! !|||..!||| ThrSerGlyLeuPheAlaValAlaGly 1239850 : ACCAGCGGTCTGTTTGCTGTGGCTGgg : 1239822 vulgar: gi|805752326|ref|XP_012144983.1| 1 66 . KQ414851.1 1240016 1239821 - 132 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240016 132 - . gene_id 4 ; sequence gi|805752326|ref|XP_012144983.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239822 1240016 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240016 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240016 132 - . alignment_id 4 ; Query gi|805752326|ref|XP_012144983.1| ; Align 1240017 2 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754729|ref|XP_012138996.1| PREDICTED: uncharacterized protein LOC100875216 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 409 Query range: 108 -> 329 Target range: 1234533 -> 1233451 109 : AspTrpValMetLeuThrArgGluLeuProValLeuGluLysAlaThrAlaGlnGl : 127 !!: !:!!! !:!!!.! !||||||! !||||||||| ! !||| !||||| GluGlnLeuArgMetAsnAspGluLeuHisValLeuGluAspIleThrMetGlnGl 1234533 : GAGCAGTTGAGGATGAACGACGAGTTGCATGTGCTTGAAGACATTACCATGCAAGG : 1234479 128 : ySerArgLeuAlaArgPheTyrArg{V} >>>> Target Intron 1 >>>> : 136 |.!!!:!||||||!:!|||||||||{ } 126 bp yGlyLysLeuAlaGlnPheTyrArg{A}++ + 1234478 : TGGTAAACTCGCGCAATTCTACAGA{A}gt.........................a : 1234327 137 : {al}ThrLeuIleLeuAlaAlaLeuValPheIleTyrIleProLeuIleAsnPro : 153 { !}||||||:!:! ! ! !:!!||||||:!: :!!||||||:!! !||| +{sn}ThrLeuLeuSerPheMetValValPheLeuLeuValProLeuValPhePro 1234326 : g{AT}ACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCA : 1234275 154 : ThrLeuAspLeuIleMetProIleAsnGlyThrArgProLysGlnGlnLeuPheGl : 172 !||||||:!!:!!:!:|||:!!|||! !|||||||||::!|||||| !||| ! PheLeuAspValValLeuProLeuAsnGluThrArgProArgGlnGlnGlyPheAr 1234274 : TTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAGGATTCAG : 1234218 173 : yAlaCysTyrValPheValGluAlaAspAspHisPheAlaAlaValPheLeuHisL : 191 !!.! !|||:!!!:! !!!!:! !! |||:!!||| !::!|||!:!!!!!!.| gValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyrPheGlnL 1234217 : AGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAAT : 1234161 192 : euGlyTrpThrThrPheValThrValTyrAsnValSerIleValAspSerLeuTyr : 209 ||!.!||| !.!! !!|||..!||| ! !:!!! !! !||||||||||||||| euAlaTrpGlyAlaValValValValMetIleIleIleThrValAspSerLeuTyr 1234160 : TGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTCGTTGTAC : 1234107 210 : IleLeuIleIleHisHisValCysGlyLeuPheAspValCys{Gl} >>>> Tar : 224 !!::!!||||||||||||!.! !!|||:!!|||! !||||||{||} MetIleIleIleHisHisAlaSerGlyMetPheAlaValCys{Gl}++ 1234106 : ATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTGTGC{GG}gt........ : 1234058 225 : get Intron 2 >>>> {y}TyrGlnIleGluThrAlaThrGlnAspProGluM : 236 118 bp {|} !!..!||| ! ! ! ! ..! !.!. +-{y}AspSerIleTyrGlyAsnAspIleSerGluAsnH 1234057 : .................aa{G}GACTCAATCTATGGCAATGACATTTCTGAGAATC : 1233908 237 : etArgTyrAspGlnPheLysGlnCysValMetThrHisHisLysAlaLeu{Le} : 253 ! !:!!!!:|||||||||!:!||||||! |||||| !!||||||:!!{ } isThrHisGluGlnPheLysArgCysValThrThrHisAspLysAlaIle{Gl}++ 1233907 : ATACGCACGAACAGTTCAAACGATGCGTGACTACGCACGATAAAGCTATC{GA}gt : 1233855 254 : >>>> Target Intron 3 >>>> {u}PhePheAspLysLeuGlnGluCysSe : 262 95 bp {!}|||!:!|||! |||.!.||| !!|| ++{u}PheTyrAspIleLeuAsnGluSerSe 1233854 : .........................ag{G}TTTTACGATATTCTAAACGAGAGCAG : 1233735 263 : rGlnAsnMetPheLeuLeuLeuValAlaLeuAsnMetThrLeuIleSerMetThrA : 281 |!:!|||! !:!|||:!!! !|||!.!|||||||||! ! !||||||:!!|||| rArgAsnSerTyrLeuIleGlnValGlyLeuAsnMetMetGlyIleSerValThrA 1233734 : TCGAAATAGCTACTTGATTCAGGTTGGATTGAACATGATGGGCATTAGCGTGACCG : 1233678 282 : laValGln >>>> Target Intron 4 >>>> IleLeuMetHisIleAsnG : 290 |||||||| 80 bp ! !:!!:!: :!::!!: laValGln+- ++ThrValLeuThrLeuAspA 1233677 : CTGTCCAGgc.........................agACAGTCCTCACACTGGACA : 1233571 291 : lnProLeuAspSerAlaArgPheIleLeuPhePheLeuCysAlaGlnPheHisLeu : 308 :!||| !!!::!! !|||! ! !:!!|||.!!:!!...! !|||||||||||| rgProAlaGluAlaLeuArgCysAlaValPheLeuValAlaGluGlnPheHisLeu 1233570 : GGCCGGCAGAAGCTCTTAGATGTGCTGTGTTCCTTGTAGCGGAGCAATTTCATTTG : 1233517 309 : TyrIleValSerLeuPheGlyGlnIleIleLeuAsnHisSerThrIleLeuAlaGl : 327 !:!|||:!!|||||| !||||||! !:!!:!!:!!|||!!!|||! !|||:!!:! PheIleIleSerLeuProGlyGlnThrLeuValAspHisCysThrLysLeuSerLy 1233516 : TTCATCATTAGCTTACCTGGACAGACACTCGTGGATCATTGTACGAAACTATCGAA : 1233460 328 : uArgMet : 329 ! !||| sAspMet 1233459 : GGATATG : 1233452 vulgar: gi|805754729|ref|XP_012138996.1| 108 329 . KQ414851.1 1234533 1233451 - 409 M 27 81 S 0 1 5 0 2 I 0 122 3 0 2 S 1 2 M 87 261 S 0 2 5 0 2 I 0 114 3 0 2 S 1 1 M 28 84 S 0 2 5 0 2 I 0 91 3 0 2 S 1 1 M 30 90 5 0 2 I 0 76 3 0 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233452 1234533 409 - . gene_id 1 ; sequence gi|805754729|ref|XP_012138996.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1234452 1234533 . - . KQ414851.1 exonerate:protein2genome:local exon 1234452 1234533 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234450 1234451 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1234326 1234451 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1234326 1234327 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1234061 1234325 . - . KQ414851.1 exonerate:protein2genome:local exon 1234061 1234325 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234059 1234060 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233943 1234060 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1233943 1233944 . - . intron_id 1 ; splice_site "AA" KQ414851.1 exonerate:protein2genome:local cds 1233856 1233942 . - . KQ414851.1 exonerate:protein2genome:local exon 1233856 1233942 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233854 1233855 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233761 1233855 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1233761 1233762 . - . intron_id 2 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233670 1233760 . - . KQ414851.1 exonerate:protein2genome:local exon 1233670 1233760 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233668 1233669 . - . intron_id 4 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1233590 1233669 . - . intron_id 4 KQ414851.1 exonerate:protein2genome:local splice3 1233590 1233591 . - . intron_id 3 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233452 1233589 . - . KQ414851.1 exonerate:protein2genome:local exon 1233452 1233589 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233452 1234533 409 - . alignment_id 1 ; Query gi|805754729|ref|XP_012138996.1| ; Align 1234534 109 81 ; Align 1234324 137 261 ; Align 1233942 225 84 ; Align 1233760 254 90 ; Align 1233590 284 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754729|ref|XP_012138996.1| PREDICTED: uncharacterized protein LOC100875216 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 224 Query range: 110 -> 224 Target range: 1240253 -> 1239821 111 : ValMetLeuThrArgGluLeuProValLeuGluLysAlaThrAlaGlnGlySerAr : 129 :!!! !:!!!:!!.!|||||| !|||||||||:!!!.!|||||||||||||||:: LeuArgIleSerAsnGluLeuSerValLeuGluGluValThrAlaGlnGlySerLy 1240253 : TTGAGGATCAGTAACGAGTTAAGCGTGCTGGAAGAAGTTACCGCCCAAGGGAGcaa : 1240199 130 : gLeuAlaArgPheTyrArg{V} >>>> Target Intron 1 >>>> {al}T : 137 :......:::...||||||{:} 90 bp {!!}. sPheValGlnLeuTyrArg{I}+- ++{le}V 1240198 : atttgtacaattgtaCAGA{A}gc.........................ag{TC}G : 1240085 138 : hrLeuIleLeuAlaAlaLeuValPheIleTyrIleProLeuIleAsnProThrLeu : 155 .!|||.!!! ... ...:::|||::: :!!|||:::... ||| ||| alLeuPheSerValLeuPheIlePheLeuValValProIlePheProProLeuLeu 1240084 : TTTTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcctcctcttctg : 1240031 156 : AspLeuIleMetProIleAsnGlyThrArgProLysGlnGlnLeuPheGlyAlaCy : 174 |||:!!:!!! |||:!!|||! !|||||| !!:::|||::::::||| ... AspIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIlePheLysValAs 1240030 : gACATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatattcaaagttaa : 1239974 175 : sTyrValPheValGluAlaAspAspHisPheAlaAlaValPheLeuHisLeuGlyT : 193 !|||:!!.!!:!!!!: !|||!!:!!. ! ! !..!!:!!!!||||||..!| nTyrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPheHisLeuSerT 1239973 : TTACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTTCACTTGTCTT : 1239917 194 : rpThrThrPheValThrValTyrAsnValSerIleValAspSerLeuTyrIleLeu : 211 ||||||||.!!..! !! ! ::!||| !! ! !!!:! !:!!|||:!!||| rpThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIleTyrValLeu 1239916 : GGACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGTCCTT : 1239863 212 : IleIleHisHisValCysGlyLeuPheAspValCysGly : 224 :!!|||||||||..! !!|||||||||! !|||..!||| LeuIleHisHisThrSerGlyLeuPheAlaValAlaGly 1239862 : CTTATTCATCATACCAGCGGTCTGTTTGCTGTGGCTGgg : 1239822 vulgar: gi|805754729|ref|XP_012138996.1| 110 224 . KQ414851.1 1240253 1239821 - 224 M 25 75 S 0 1 5 0 2 I 0 86 3 0 2 S 1 2 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240253 224 - . gene_id 2 ; sequence gi|805754729|ref|XP_012138996.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1240178 1240253 . - . KQ414851.1 exonerate:protein2genome:local exon 1240178 1240253 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1240176 1240177 . - . intron_id 1 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1240088 1240177 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1240088 1240089 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1239822 1240087 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240087 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240253 224 - . alignment_id 2 ; Query gi|805754729|ref|XP_012138996.1| ; Align 1240254 111 75 ; Align 1240086 137 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754729|ref|XP_012138996.1| PREDICTED: uncharacterized protein LOC100875216 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 222 Query range: 136 -> 224 Target range: 1229488 -> 1229224 137 : ThrLeuIleLeuAlaAlaLeuValPheIleTyrIleProLeuIleAsnProThrLe : 155 .!!|||:!!!!!||| !! !||||||:!: :!!||||||.!!..!|||.!!|| AlaLeuLeuPheAlaMetCysValPheLeuLeuValProLeuPheGlyProAlaLe 1229488 : GCTTTACTCTTCGCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCT : 1229434 156 : uAspLeuIleMetProIleAsnGlyThrArgProLysGlnGlnLeuPheGlyAlaC : 174 ||||:!!:!!:!:||| !|||! !|||||||||::!|||||||||||| !!!.! uAspIleValLeuProSerAsnGluThrArgProArgGlnGlnLeuPheArgValA 1229433 : GGACATCGTCCTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTA : 1229377 175 : ysTyrValPheValGluAlaAspAspHisPheAlaAlaValPheLeuHisLeuGly : 192 !|||:!!.!! !!!!: !! |||:!!||| ! !|||!:!:!!!!.||| ! snTyrIleIlePheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPhe 1229376 : ACTATATAATTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTT : 1229323 193 : TrpThrThrPheValThrValTyrAsnValSerIleValAspSerLeuTyrIleLe : 211 ||| !|||.!!||| !||| !:!!! !! !|||||||||||||||!!::! TrpCysThrIleValLeuValMetAlaIleIleThrValAspSerLeuTyrMetIl 1229322 : TGGTGTACAATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGAT : 1229266 212 : uIleIleHisHisValCysGlyLeuPheAspValCysGly : 224 !||||||:!!|||!.! !!|||:!!|||! !:!!|||||| eIleIleTyrHisAlaSerGlyMetPheAlaIleCysGly 1229265 : CATAATTTACCATGCCAGCGGAATGTTCGCTATATGCGGG : 1229225 vulgar: gi|805754729|ref|XP_012138996.1| 136 224 . KQ414851.1 1229488 1229224 - 222 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229488 222 - . gene_id 3 ; sequence gi|805754729|ref|XP_012138996.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229225 1229488 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229488 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229488 222 - . alignment_id 3 ; Query gi|805754729|ref|XP_012138996.1| ; Align 1229489 137 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754729|ref|XP_012138996.1| PREDICTED: uncharacterized protein LOC100875216 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 211 Query range: 136 -> 260 Target range: 1224288 -> 1223782 137 : ThrLeuIleLeuAlaAlaLeuValPheIleTyrIleProLeuIleAsnProThrLe : 155 :!!||| :!!!.! !||||||!:!!!: !.!!|||||||||||||||..!|| SerLeuTrpIleValLeuLeuValTyrMetSerPheProLeuIleAsnProValLe 1224288 : tCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTT : 1224234 156 : uAspLeuIleMetProIleAsnGlyThrArgProLysGlnGlnLeuPheGlyAlaC : 174 ||||:!!:!! !|||:!!|||! !|||||||||:::::!! |||.!! !!.! uAspValValAlaProLeuAsnGluThrArgProArgArgLeuLeuLeuProValS 1224233 : GGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTA : 1224177 175 : ysTyrValPheValGluAlaAspAspHisPheAlaAlaValPheLeuHisLeuGly : 192 !!|||:!!|||:!!!!:! ! !!!!:|||||| !::!||| !!!!|||||| ! erTyrIlePheIleAspGluTyrGluHisPheTyrSerValAsnPheHisLeuTyr 1224176 : GTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATAC : 1224123 193 : TrpThrThrPheValThrValTyrAsnValSerIleValAspSerLeuTyrIleLe : 211 !:!..!.!! ! !! ! ! :!!! ! !||||||! !||||||||| ThrSerValIleSerCysGlyMetMetIleIleAlaValAspMetLeuTyrIleTh 1224122 : ACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATATGTTATACATTAC : 1224066 212 : uIleIleHisHisValCysGlyLeuPheAspValCysGlyTyrGlnIleGluThrA : 230 !|||||| !|||:!!||||||||||||! |||||||||!! ! ! !! !!! rIleIlePheHisLeuCysGlyLeuPheAlaValCysGly***Ile******ProG 1224065 : TATCATTTTTCACCTTTGCGGATTGTTCGCAGTGTGTGGGTAAATATGATAACCGG : 1224009 231 : laThrGlnAspProGluMetArgTyrAspGln >>>> Target Intron 1 > : 241 ! ! ! ! !.!. !!:!|||:!! 134 bp luGluIleMetHisHis***PhePheAspLys++ 1224008 : AAGAAATAATGCATCATTAATTTTTTGACAAGgt...................... : 1223974 242 : >>> PheLysGlnCysValMetThrHisHisLysAlaLeuLeuPhePheAspLys : 257 |||||||||||||||! ! !||||||:!!||||||! !! ! ! ...||| ++PheLysGlnCysValThrMetHisHisGluAlaLeuGlnSerValSerLys 1223973 : ...agTTCAAACAATGTGTGACAATGCATCACGAAGCCCTTCAGTCTGTATCGAAA : 1223794 258 : LeuGlnGlu : 260 :!!..!:!! ValSerGln 1223793 : GTTTCACAG : 1223783 vulgar: gi|805754729|ref|XP_012138996.1| 136 260 . KQ414851.1 1224288 1223782 - 211 M 104 312 5 0 2 I 0 130 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1223783 1224288 211 - . gene_id 4 ; sequence gi|805754729|ref|XP_012138996.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1223977 1224288 . - . KQ414851.1 exonerate:protein2genome:local exon 1223977 1224288 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1223975 1223976 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1223843 1223976 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1223843 1223844 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1223783 1223842 . - . KQ414851.1 exonerate:protein2genome:local exon 1223783 1223842 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1223783 1224288 211 - . alignment_id 4 ; Query gi|805754729|ref|XP_012138996.1| ; Align 1224289 137 312 ; Align 1223843 241 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754729|ref|XP_012138996.1| PREDICTED: uncharacterized protein LOC100875216 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 197 Query range: 136 -> 224 Target range: 1243860 -> 1243599 137 : ThrLeuIleLeuAlaAlaLeuValPheIleTyrIleProLeuIleAsnProThrLe : 155 ||||||.!!! ! !:!!:!!:!!|||:!!! .!!||||||||| |||! !|| ThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleLe 1243860 : ACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATT : 1243806 156 : uAspLeuIleMetProIleAsnGlyThrArgProLysGlnGlnLeuPheGlyAlaC : 174 ||||:!!:!! |||:!!|||! !|||||| !!::! !::::::... uAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuG 1243805 : GGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgc : 1243749 175 : ysTyrValPheValGluAlaAspAspHisPheAlaAlaValPheLeuHisLeuGly : 192 |||:!!||| !!: ::: :::||| ::::::::::!!:!! !||| lnTyrLeuPhe---AspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGly 1243748 : aataccTGTTC---GACAtggagaagaatttttattcattatacGTCTACACTGGC : 1243698 193 : TrpThrThrPheValThrValTyrAsnValSerIleValAspSerLeuTyrIleLe : 211 ||| !:!!|||:!!|||:!! !:!!! !! !:!!|||:!!||||||:!::! TrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValVa 1243697 : TGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGT : 1243641 212 : uIleIleHisHisValCysGlyLeuPheAspValCysGly : 224 !||||||||||||..!||||||||||||! !||||||||| lIleIleHisHisThrCysGlyLeuPheAlaValCysGly 1243640 : AATCATTCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: gi|805754729|ref|XP_012138996.1| 136 224 . KQ414851.1 1243860 1243599 - 197 M 41 123 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243860 197 - . gene_id 5 ; sequence gi|805754729|ref|XP_012138996.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243860 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243860 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243860 197 - . alignment_id 5 ; Query gi|805754729|ref|XP_012138996.1| ; Align 1243861 137 123 ; Align 1243738 179 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752277|ref|XP_012143815.1| PREDICTED: uncharacterized protein LOC100879096 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 277 Query range: 35 -> 130 Target range: 1233601 -> 1233246 36 : PheGluLeuGlnIleIleMetHisPheAspArgProAlaAspAlaMetArgPheVa : 54 |||...!!!|||! !:!!:!: .!.||||||||||||!!:|||:!:|||! !!. PheSerPheGlnThrValLeuThrLeuAspArgProAlaGluAlaLeuArgCysAl 1233601 : TTTTCCTTCCAGACAGTCCTCACACTGGACAGGCCGGCAGAAGCTCTTAGATGTGC : 1233547 55 : lLeuPheLeuIleAlaGlnAsnPheHisLeuPheValIleSerAlaAsnGlyGlnI : 73 !:!!||||||:!!|||:!!.!.||||||||||||:!!|||||| ! !||||||! aValPheLeuValAlaGluGlnPheHisLeuPheIleIleSerLeuProGlyGlnT 1233546 : TGTGTTCCTTGTAGCGGAGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGA : 1233490 74 : leLeuThrAsnHisAlaPheLeuLeuProAspLys{Il} >>>> Target Int : 85 !|||..!:!!|||..! !||| !! ! ! {||} 70 bp hrLeuValAspHisCysThrLysLeuSerLysAsp{Il}++ 1233489 : CACTCGTGGATCATTGTACGAAACTATCGAAGGAT{AT}gt............... : 1233450 86 : ron 1 >>>> {e}PheSerSerAsnTrpTyrGluIleProValLysPheGlnLy : 99 {|}!:!||||||!..||||||:!!:!!|||!.!|||||||||:: ++{e}TyrSerSerThrTrpTyrLysValProAlaLysPheGlnAr 1233449 : ..........ag{A}TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCG : 1233342 100 : sLeuLeuTyrThrMetIleIleArgCysAsnArgProCysIleLeuSerAlaGlyG : 118 !:!!:!!||||||||| !||||||..! !:!||||||:!!|||!!!||||||| gValIleTyrThrMetGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyG 1233341 : AGTAATTTACACGATGCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTG : 1233285 119 : lyLeuTyrAspMetAsnIleGluAsnPheGlyLysVal : 130 ||||||||!!:||||||!!:|||||||||!.!!!.||| lyLeuTyrGluMetAsnMetGluAsnPheAlaAsnVal 1233284 : GATTGTATGAAATGAACATGGAGAACTTTGCAAACGTT : 1233247 vulgar: gi|805752277|ref|XP_012143815.1| 35 130 . KQ414851.1 1233601 1233246 - 277 M 49 147 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233247 1233601 277 - . gene_id 1 ; sequence gi|805752277|ref|XP_012143815.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233453 1233601 . - . KQ414851.1 exonerate:protein2genome:local exon 1233453 1233601 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233451 1233452 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233383 1233452 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233383 1233384 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233247 1233382 . - . KQ414851.1 exonerate:protein2genome:local exon 1233247 1233382 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233247 1233601 277 - . alignment_id 1 ; Query gi|805752277|ref|XP_012143815.1| ; Align 1233602 36 147 ; Align 1233382 86 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752277|ref|XP_012143815.1| PREDICTED: uncharacterized protein LOC100879096 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 184 Query range: 85 -> 144 Target range: 1222505 -> 1222328 86 : PheSerSerAsnTrpTyrGluIleProValLysPheGlnLysLeuLeuTyrThrMe : 104 !:!:!!|||!!.|||||||||:!!||||||||| |||||||||:!!|||||||| TyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTyrThrMe 1222505 : TACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTACACGAT : 1222451 105 : tIleIleArgCysAsnArgProCysIleLeuSerAlaGlyGlyLeuTyrAspMetA : 123 | !!!:|||! !! |||||||||||||||!!!|||||||||:!!:!!!!:|||| tGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisGluMetA 1222450 : GCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATGAGATGA : 1222394 124 : snIleGluAsnPheGlyLysValCysThrAsnTyrValGlyAsnAlaTyrThrCys : 141 ||||||||!:!||||||! !||||||!.!||| :!!..! ! ! !! !||| snIleGluSerPheGlyIleValCysAsnAsnMetIleAsn******SerIleCys 1222393 : ACATCGAGAGTTTCGGAATAGTATGTAATAATATGATAAATTAGTGAAGTATCTGT : 1222340 142 : MetLeuMet : 144 :!:|||::: ValLeuIle 1222339 : GTTctaata : 1222329 vulgar: gi|805752277|ref|XP_012143815.1| 85 144 . KQ414851.1 1222505 1222328 - 184 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222329 1222505 184 - . gene_id 2 ; sequence gi|805752277|ref|XP_012143815.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1222329 1222505 . - . KQ414851.1 exonerate:protein2genome:local exon 1222329 1222505 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222329 1222505 184 - . alignment_id 2 ; Query gi|805752277|ref|XP_012143815.1| ; Align 1222506 86 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752277|ref|XP_012143815.1| PREDICTED: uncharacterized protein LOC100879096 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 156 Query range: 85 -> 130 Target range: 1228545 -> 1228410 86 : PheSerSerAsnTrpTyrGluIleProValLysPheGlnLysLeuLeuTyrThrMe : 104 !:!||||||!..||||||:!!:!! !!!.!|||||||||::!:!!:!!|||! !|| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 105 : tIleIleArgCysAsnArgProCysIleLeuSerAlaGlyGlyLeuTyrAspMetA : 123 | !||||||..! !:!||||||||||||!!!|||||||||||||||!!:|||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 124 : snIleGluAsnPheGlyLysVal : 130 ||!!:|||||||||!.!!!.||| snMetGluAsnPheAlaAsnVal 1228433 : ACATGGAGAACTTTGCAAACGTT : 1228411 vulgar: gi|805752277|ref|XP_012143815.1| 85 130 . KQ414851.1 1228545 1228410 - 156 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1228545 156 - . gene_id 3 ; sequence gi|805752277|ref|XP_012143815.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228411 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1228545 156 - . alignment_id 3 ; Query gi|805752277|ref|XP_012143815.1| ; Align 1228546 86 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752277|ref|XP_012143815.1| PREDICTED: uncharacterized protein LOC100879096 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 147 Query range: 85 -> 133 Target range: 1242796 -> 1242652 86 : PheSerSerAsnTrpTyrGluIleProValLysPheGlnLysLeuLeuTyrThrMe : 104 !:!!:!|||! ||||||:!!! !|||||| !.!!||||||:!!|||:!!! !:! TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIleVa 1242796 : TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATATAGT : 1242742 105 : tIleIleArgCysAsnArgProCysIleLeuSerAlaGlyGlyLeuTyrAspMetA : 123 : !||||||! !..!!:!||||||! !||| !|||||||||||||||!!:|||| lGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluMetA 1242741 : ACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAATGA : 1242685 124 : snIleGluAsnPheGlyLysValCysThrAsn : 133 |||||||||||||||||..!||| ...||| snIleGluAsnPheGlySerValArgValAsn 1242684 : ACATTGAGAATTTTGGATCAGTACgtgttaat : 1242653 vulgar: gi|805752277|ref|XP_012143815.1| 85 133 . KQ414851.1 1242796 1242652 - 147 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242653 1242796 147 - . gene_id 4 ; sequence gi|805752277|ref|XP_012143815.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1242653 1242796 . - . KQ414851.1 exonerate:protein2genome:local exon 1242653 1242796 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242653 1242796 147 - . alignment_id 4 ; Query gi|805752277|ref|XP_012143815.1| ; Align 1242797 86 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752277|ref|XP_012143815.1| PREDICTED: uncharacterized protein LOC100879096 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 35 -> 86 Target range: 1228767 -> 1228614 36 : PheGluLeuGlnIleIleMetHisPheAspArgProAlaAspAlaMetArgPheVa : 54 .!!...!!!||||||!!::!: !.!.|||||||||::!!!:|||!!:|||!:! LeuSerPheGlnIleMetLeuAlaLeuAspArgProSerGluAlaIleArgTyrSe 1228767 : CTTTCTTTCCAGATAATGCTCGCCCTGGATAGACCGAGCGAAGCTATTAGATATTC : 1228713 55 : lLeuPheLeuIleAlaGlnAsnPheHisLeuPheValIleSerAlaAsnGlyGlnI : 73 !:!! !!||| !!.! !.!.||||||||||||:!!|||||| ! !||||||! rValValLeuGlyGlyAlaGlnPheHisLeuPheIleIleSerLeuProGlyGlnT 1228712 : TGTGGTTCTTGGAGGTGCGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGA : 1228656 74 : leLeuThrAsnHisAlaPheLeuLeuProAspLysIlePhe : 86 !|||..!:!!|||..! !:!!||| !!:!! ! !!:!:! hrLeuValAspHisCysThrMetLeuThrAsnAspMetTyr 1228655 : CACTCGTGGATCATTGTACCATGCTAACGAACGATATGTAC : 1228615 vulgar: gi|805752277|ref|XP_012143815.1| 35 86 . KQ414851.1 1228767 1228614 - 103 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228615 1228767 103 - . gene_id 5 ; sequence gi|805752277|ref|XP_012143815.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228615 1228767 . - . KQ414851.1 exonerate:protein2genome:local exon 1228615 1228767 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228615 1228767 103 - . alignment_id 5 ; Query gi|805752277|ref|XP_012143815.1| ; Align 1228768 36 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752280|ref|XP_012143908.1| PREDICTED: uncharacterized protein LOC100878986 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 291 Query range: 89 -> 240 Target range: 1234335 -> 1233669 90 : LeuTyrArgThrThrLeuLeuSerPheLeuMetValPheIleAlaIleProLeuIl : 108 !!!!:! ! !|||||||||||||||:!!:!:||||||:!: !:!!||||||:! PhePheSerAspThrLeuLeuSerPheMetValValPheLeuLeuValProLeuVa 1234335 : TTCTTCTCAGATACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGT : 1234281 109 : eProProAlaLeuAspIleIleAlaProLeuAsnValThrArgProArgGlnProM : 127 ! !||| !||||||:!!:!! !|||||||||! !|||||||||||||||! ! lPheProPheLeuAspValValLeuProLeuAsnGluThrArgProArgGlnGlnG 1234280 : TTTTCCATTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAG : 1234224 128 : etPheArgAlaAsnTyrValIleIleLysValAspAspHisPhePheValThrTyr : 145 ||||||!.!||||||:!! !.!! ! ! !! |||:!!|||||| !..!||| lyPheArgValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyr 1234223 : GATTCAGAGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTAC : 1234170 146 : ValHisMetAlaSerValAlaSerLeuGlyValPheIleIleValThrValAspSe : 164 !!!!.:!!|||!!!! !||| !:!!! !|||.!.||||||:!!||||||||||| PheGlnLeuAlaTrpGlyAlaValValValValMetIleIleIleThrValAspSe 1234169 : TTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTC : 1234113 165 : rLeuTyrMetLeuIleIleHisHisAlaCysGlyLeuPheAspValCys{Gl} > : 181 ||||||||||:!!||||||||||||||| !!|||:!!|||! !||||||{||} rLeuTyrMetIleIleIleHisHisAlaSerGlyMetPheAlaValCys{Gl}++ 1234112 : GTTGTACATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTGTGC{GG}gt. : 1234058 182 : >>> Target Intron 1 >>>> {y}TyrGlnValGlnMetAlaThrLysAsn : 190 213 bp {|} !!|||:!!..!! !! !||| !! +-{y}AspGlnIleMetThrIleIleLysTyr 1234057 : ........................ac{T}GATCAAATAATGACAATAATAAAGTAT : 1233822 191 : SerIleLeuSerTyrGluGluPheArgGlnCysValIleThrHisHisLysAlaLe : 209 !:! !! !! ! !..! !!!.!:!! ! ! !:!: ! ! ! ! !! AsnGlu***LeuAlaArgLeuLeuLysProThrAsnLeuCysPheCysTyrIleSe 1233821 : AATGAATAATTAGCCCGATTATTGAAACCGACTAACTTGTGCTTTTGTTACATTTC : 1233765 210 : uHisPhePheAsnThrLeuGlnGluCysSerGlnAsnMetAsnLeuMetLeuValG : 228 !...|||!:!:!!! !|||.!.||| !!|||!:!|||! !!|||!!:! !|||| rArgPheTyrAspIleLeuAsnGluSerSerArgAsnSerTyrLeuIleGlnValG 1233764 : CAGGTTTTACGATATTCTAAACGAGAGCAGTCGAAATAGCTACTTGATTCAGGTTG : 1233708 229 : lyIleAsnMetLeuLeuIleSerMetThrAlaValGln : 240 ||:!:||||||:!! !||||||:!!|||||||||||| lyLeuAsnMetMetGlyIleSerValThrAlaValGln 1233707 : GATTGAACATGATGGGCATTAGCGTGACCGCTGTCCAG : 1233670 vulgar: gi|805752280|ref|XP_012143908.1| 89 240 . KQ414851.1 1234335 1233669 - 291 M 91 273 S 0 2 5 0 2 I 0 209 3 0 2 S 1 1 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233670 1234335 291 - . gene_id 1 ; sequence gi|805752280|ref|XP_012143908.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1234061 1234335 . - . KQ414851.1 exonerate:protein2genome:local exon 1234061 1234335 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234059 1234060 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233848 1234060 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233848 1233849 . - . intron_id 0 ; splice_site "AC" KQ414851.1 exonerate:protein2genome:local cds 1233670 1233847 . - . KQ414851.1 exonerate:protein2genome:local exon 1233670 1233847 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233670 1234335 291 - . alignment_id 1 ; Query gi|805752280|ref|XP_012143908.1| ; Align 1234336 90 273 ; Align 1233847 182 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752280|ref|XP_012143908.1| PREDICTED: uncharacterized protein LOC100878986 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 257 Query range: 255 -> 351 Target range: 1233604 -> 1233246 256 : ThrPheIleLeuGlnIleIleLeuTyrIleAspGlnProAlaAspAlaMetArgPh : 274 !.!||| !!!!|||! !:!!||| :!:|||::!||||||!!:|||:!:|||! AsnPheSerPheGlnThrValLeuThrLeuAspArgProAlaGluAlaLeuArgCy 1233604 : AACTTTTCCTTCCAGACAGTCCTCACACTGGACAGGCCGGCAGAAGCTCTTAGATG : 1233550 275 : eIleLeuPheLeuIleAlaGluLysPheHisLeuLeuValIleSerLeuPheGlyG : 293 ! !:!!||||||:!!||||||:!!|||||||||!!!:!!||||||||| !|||| sAlaValPheLeuValAlaGluGlnPheHisLeuPheIleIleSerLeuProGlyG 1233549 : TGCTGTGTTCCTTGTAGCGGAGCAATTTCATTTGTTCATCATTAGCTTACCTGGAC : 1233493 294 : lnIleLeuLeuAsnTyrAlaSerSerLeuProGluLys{Il} >>>> Target : 306 ||! !|||:!!:!!:!!..!!!!!.!||| !!:!! ! {||} 70 lnThrLeuValAspHisCysThrLysLeuSerLysAsp{Il}++ 1233492 : AGACACTCGTGGATCATTGTACGAAACTATCGAAGGAT{AT}gt............ : 1233450 307 : Intron 1 >>>> {e}PheSerSerAsnTrpTyrGluMetProValLysTyrGl : 319 bp {|}!:!||||||!..||||||:!!:!:|||!.!|||!:!|| ++{e}TyrSerSerThrTrpTyrLysValProAlaLysPheGl 1233449 : .............ag{A}TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCA : 1233345 320 : nLysIleLeuTyrMetMetIleIleArgCysAsnLysThrCysAsnLeuSerAlaG : 338 |::!:!!:!!|||! !||| !||||||..! ||| !!||| !|||!!!|||| nArgValIleTyrThrMetGlnIleArgAlaLeuLysProCysValLeuThrAlaG 1233344 : GCGAGTAATTTACACGATGCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAG : 1233288 339 : lyGlyLeuTyrAspMetAsnIleGluAsnPheGlyLysVal : 351 |||||||||||!!:||||||!!:|||||||||!.!!!.||| lyGlyLeuTyrGluMetAsnMetGluAsnPheAlaAsnVal 1233287 : GTGGATTGTATGAAATGAACATGGAGAACTTTGCAAACGTT : 1233247 vulgar: gi|805752280|ref|XP_012143908.1| 255 351 . KQ414851.1 1233604 1233246 - 257 M 50 150 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233247 1233604 257 - . gene_id 2 ; sequence gi|805752280|ref|XP_012143908.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233453 1233604 . - . KQ414851.1 exonerate:protein2genome:local exon 1233453 1233604 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233451 1233452 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233383 1233452 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233383 1233384 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233247 1233382 . - . KQ414851.1 exonerate:protein2genome:local exon 1233247 1233382 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233247 1233604 257 - . alignment_id 2 ; Query gi|805752280|ref|XP_012143908.1| ; Align 1233605 256 150 ; Align 1233382 307 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752280|ref|XP_012143908.1| PREDICTED: uncharacterized protein LOC100878986 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 254 Query range: 250 -> 354 Target range: 1222744 -> 1222361 251 : AsnIleAsnTyrIleThrPheIleLeuGlnIleIleLeuTyrIleAspGlnProAl : 269 .!.|||..! ! ! !||||||!!!||| !|||:!! !!||||||!:!|||! GlnIleArgIleAlaAspPheIlePheGlnCysIleMetAsnIleAspArgProAs 1222744 : CAAATACGCATCGCCGATTTTATTTTCCAGTGCATTATGAACATCGACCGACCTGA : 1222690 270 : aAspAlaMetArgPheIleLeuPheLeuIleAlaGluLysPheHisLeuLeuValI : 288 !!!: !!!:|||.!! :!!|||:!!:!!|||:::|||||||||||||||:!!: pGluLeuIleArgLeuAlaMetPheValValAlaGlnLysPheHisLeuLeuIleL 1222689 : CGAACTCATCAGGCTTGCGATGTTTGTCGTAGctcagaaatttcatttgctcATCC : 1222633 289 : leSerLeuPheGlyGlnIleLeuLeuAsnTyrAlaSerSerLeuProGluLys{Il : 306 !!|||||| !||||||!!:||||||:!!:!!::!! !.!!||| !!!!:! !{|| euSerLeuProGlyGlnMetLeuLeuAspHisSerLeuGlyLeuAlaAspIle{Il 1222632 : TTAGTTTACCTGGGCAAATGTTGTTAGATCATAGTTTAGGATTGGCCGATATA{AT : 1222579 307 : } >>>> Target Intron 1 >>>> {e}PheSerSerAsnTrpTyrGluMe : 314 } 71 bp {|}!:!:!!|||!!.|||||||||:! }++ ++{e}TyrAlaSerLysTrpTyrGluLe 1222578 : }gt.........................ag{T}TACGCTTCTAAATGGTACGAACT : 1222484 315 : tProValLysTyrGlnLysIleLeuTyrMetMetIleIleArgCysAsnLysThrC : 333 :||||||||| ||||||:!::!!|||! !||| !!!:|||! !! ::! !!| uProValLysGlyGlnLysLeuIleTyrThrMetGlnMetArgSerIleArgProC 1222483 : ACCGGTAAAAGGGCAAAAGTTGATTTACACGATGCAAATGAGGTCCATACGGCCAT : 1222427 334 : ysAsnLeuSerAlaGlyGlyLeuTyrAspMetAsnIleGluAsnPheGlyLysVal : 351 ||! |||!!!|||||||||:!!:!!!!:||||||||||||!:!||||||! !||| ysIleLeuThrAlaGlyGlyValHisGluMetAsnIleGluSerPheGlyIleVal 1222426 : GTATATTAACAGCAGGAGGAGTGCATGAGATGAACATCGAGAGTTTCGGAATAGTA : 1222373 352 : CysThrAsp : 354 |||!.!:!! CysAsnAsn 1222372 : TGTAATAAT : 1222362 vulgar: gi|805752280|ref|XP_012143908.1| 250 354 . KQ414851.1 1222744 1222361 - 254 M 55 165 S 0 2 5 0 2 I 0 67 3 0 2 S 1 1 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222362 1222744 254 - . gene_id 3 ; sequence gi|805752280|ref|XP_012143908.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1222578 1222744 . - . KQ414851.1 exonerate:protein2genome:local exon 1222578 1222744 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1222576 1222577 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222507 1222577 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1222507 1222508 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222362 1222506 . - . KQ414851.1 exonerate:protein2genome:local exon 1222362 1222506 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222362 1222744 254 - . alignment_id 3 ; Query gi|805752280|ref|XP_012143908.1| ; Align 1222745 251 165 ; Align 1222506 307 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752280|ref|XP_012143908.1| PREDICTED: uncharacterized protein LOC100878986 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 238 Query range: 93 -> 241 Target range: 1243860 -> 1243080 94 : ThrLeuLeuSerPheLeuMetValPheIleAlaIleProLeuIleProProAlaLe : 112 ||||||!!!! !|||! !!!::!!|||:!! !.!!||||||||||||||| !|| ThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleLe 1243860 : ACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATT : 1243806 113 : uAspIleIleAlaProLeuAsnValThrArgProArgGlnProMetPheArgAlaA : 131 ||||:!!:!!:!!|||||||||! !|||||| !!||| ! :::...::: . uAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuG 1243805 : GGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgc : 1243749 132 : snTyrValIleIleLysValAspAspHisPhePheValThrTyrValHisMetAla : 149 ..||| :!:.!! ! :::::: :::|||::: ||||||:!!! !.! lnTyr---LeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGly 1243748 : aatac---cTGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGC : 1243698 150 : SerValAlaSerLeuGlyValPheIleIleValThrValAspSerLeuTyrMetLe : 168 !!! !:!!! !:!! !:!!.!.:!!|||:!!|||:!!|||:!!||||||:!!:! TrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValVa 1243697 : TGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGT : 1243641 169 : uIleIleHisHisAlaCysGlyLeuPheAspValCys{Gl} >>>> Target I : 181 !||||||||||||.!!||||||||||||! !||||||{||} 342 lIleIleHisHisThrCysGlyLeuPheAlaValCys{Gl}++ 1243640 : AATCATTCATCACACGTGTGGCTTATTCGCTGTTTGC{GG}gt............. : 1243598 182 : ntron 1 >>>> {y}TyrGlnValGlnMetAlaThrLysAsnSerIleLeuSer : 194 bp {|}|||.!.:!! |||...... ++{y}TyrAsnIle***SerLeuLysLysLysLysLys***Arg 1243597 : ............ag{T}TACAATATTtagtcgttaaaaaaaaaaaagaaataacga : 1243221 195 : TyrGluGluPheArgGlnCysValIleThrHisHisLysAlaLeuHisPhePheAs : 213 :!! !|||! !::! |||||| ||| ! !!! !! !|||:! ValGlnThrPheLeuArgPheValIlePheIleHisAsp---PheSerSerPheAs 1243220 : gTACAAACATTTCTAAGGttcgttatttttatacatgAT---TTCAGCTCTTTCGA : 1243167 214 : nThrLeuGlnGluCysSerGlnAsnMetAsnLeuMetLeuValGlyIleAsnMetL : 232 !|||:!!.!.||| !!!!...!.. !!|||.!.! !||||||:!!||||||: pThrIleAsnGluIleThrSerThrCysTyrLeuPheGlnValGlyLeuAsnMetI 1243166 : TACCATAAACGAAATCACTAGCACATGTTACTTGTTTCAAGTCGGACTTAATATGA : 1243110 233 : euLeuIleSerMetThrAlaValGlnVal : 241 !! !||||||:!!|||:!!|||! !||| leGlyIleSerValThrSerValLeuVal 1243109 : TCGGTATTAGCGTGACGTCTGTTCTAGTA : 1243081 vulgar: gi|805752280|ref|XP_012143908.1| 93 241 . KQ414851.1 1243860 1243080 - 238 M 39 117 G 1 0 M 47 141 S 0 2 5 0 2 I 0 338 3 0 2 S 1 1 M 26 78 G 1 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243081 1243860 238 - . gene_id 4 ; sequence gi|805752280|ref|XP_012143908.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1243601 1243860 . - . KQ414851.1 exonerate:protein2genome:local exon 1243601 1243860 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local splice5 1243599 1243600 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243259 1243600 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1243259 1243260 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1243081 1243258 . - . KQ414851.1 exonerate:protein2genome:local exon 1243081 1243258 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243081 1243860 238 - . alignment_id 4 ; Query gi|805752280|ref|XP_012143908.1| ; Align 1243861 94 117 ; Align 1243744 134 141 ; Align 1243258 182 78 ; Align 1243180 209 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752280|ref|XP_012143908.1| PREDICTED: uncharacterized protein LOC100878986 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 236 Query range: 93 -> 181 Target range: 1229488 -> 1229224 94 : ThrLeuLeuSerPheLeuMetValPheIleAlaIleProLeuIleProProAlaLe : 112 .!!||||||! ! :!! ||||||:!: !:!!||||||.!! !|||||||| AlaLeuLeuPheAlaMetCysValPheLeuLeuValProLeuPheGlyProAlaLe 1229488 : GCTTTACTCTTCGCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCT : 1229434 113 : uAspIleIleAlaProLeuAsnValThrArgProArgGlnProMetPheArgAlaA : 131 |||||||:!! !|||! !|||! !|||||||||||||||! !:!!||||||!.!| uAspIleValLeuProSerAsnGluThrArgProArgGlnGlnLeuPheArgValA 1229433 : GGACATCGTCCTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTA : 1229377 132 : snTyrValIleIleLysValAspAspHisPhePheValThrTyrValHisMetAla : 149 |||||:!!|||.!! ! !! |||:!!|||||| !..!|||:!!!!.:!! ! snTyrIleIlePheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPhe 1229376 : ACTATATAATTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTT : 1229323 150 : SerValAlaSerLeuGlyValPheIleIleValThrValAspSerLeuTyrMetLe : 168 !!! !.!!! !:!! !|||.!. !|||:!!|||||||||||||||||||||:! TrpCysThrIleValLeuValMetAlaIleIleThrValAspSerLeuTyrMetIl 1229322 : TGGTGTACAATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGAT : 1229266 169 : uIleIleHisHisAlaCysGlyLeuPheAspValCysGly : 181 !||||||:!!|||||| !!|||:!!|||! !:!!|||||| eIleIleTyrHisAlaSerGlyMetPheAlaIleCysGly 1229265 : CATAATTTACCATGCCAGCGGAATGTTCGCTATATGCGGG : 1229225 vulgar: gi|805752280|ref|XP_012143908.1| 93 181 . KQ414851.1 1229488 1229224 - 236 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229488 236 - . gene_id 5 ; sequence gi|805752280|ref|XP_012143908.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229225 1229488 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229488 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229488 236 - . alignment_id 5 ; Query gi|805752280|ref|XP_012143908.1| ; Align 1229489 94 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752280|ref|XP_012143908.1| PREDICTED: uncharacterized protein LOC100878986 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 212 Query range: 261 -> 351 Target range: 1243003 -> 1242661 262 : IleLeuTyrIleAspGlnProAlaAspAlaMetArgPheIleLeuPheLeuIleAl : 280 .!!:!! !!:!!|||!:!|||! !!!: ! |||.!! !! !||||||||||| PheIleAsnLeuAspArgProGluGluPheAlaArgIleAlaCysPheLeuIleAl 1243003 : TTTATAAATCTAGATCGGCCTGAAGAATTTGCCAGAATTGCTTGTTTCCTTATAGC : 1242949 281 : aGluLysPheHisLeuLeuValIleSerLeuPheGlyGlnIleLeuLeuAsnTyrA : 299 |:!!:!!.!!||||||||||||||||||:!! |||||||||:!! !:!! ! : aGlnGlnLeuHisLeuLeuValIleSerValProGlyGlnIleIleThrAspGlnS 1242948 : TCAGCAACTCCACTTGTTAGTCATTAGTGTACCAGGGCAGATCATCACGGATCAAA : 1242892 300 : laSerSerLeuProGluLys{Il} >>>> Target Intron 1 >>>> {e} : 306 :!|||!.!||| !! ! {||} 72 bp {|} erSerLysLeuThrIleAsp{Il}++ ++{e} 1242891 : GTTCAAAGTTGACCATTGAC{AT}gt.........................ag{A} : 1242797 307 : PheSerSerAsnTrpTyrGluMetProValLysTyrGlnLysIleLeuTyrMetMe : 325 !:!!:!|||! ||||||:!!! |||||| ! !||||||||||||:!!!!::! TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIleVa 1242796 : TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATATAGT : 1242742 326 : tIleIleArgCysAsnLysThrCysAsnLeuSerAlaGlyGlyLeuTyrAspMetA : 344 : !||||||! !..!||| !!|||!!.||| !|||||||||||||||!!:|||| lGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluMetA 1242741 : ACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAATGA : 1242685 345 : snIleGluAsnPheGlyLysVal : 351 |||||||||||||||||..!||| snIleGluAsnPheGlySerVal 1242684 : ACATTGAGAATTTTGGATCAGTA : 1242662 vulgar: gi|805752280|ref|XP_012143908.1| 261 351 . KQ414851.1 1243003 1242661 - 212 M 44 132 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242662 1243003 212 - . gene_id 6 ; sequence gi|805752280|ref|XP_012143908.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1242870 1243003 . - . KQ414851.1 exonerate:protein2genome:local exon 1242870 1243003 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242868 1242869 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242798 1242869 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1242798 1242799 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242662 1242797 . - . KQ414851.1 exonerate:protein2genome:local exon 1242662 1242797 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242662 1243003 212 - . alignment_id 6 ; Query gi|805752280|ref|XP_012143908.1| ; Align 1243004 262 132 ; Align 1242797 307 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752280|ref|XP_012143908.1| PREDICTED: uncharacterized protein LOC100878986 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 197 Query range: 89 -> 181 Target range: 1224300 -> 1224024 90 : LeuTyrArgThrThrLeuLeuSerPheLeuMetValPheIleAlaIleProLeuIl : 108 :::::: :!!|||! !! ! !!|||:!:|||!:!!!:::!.!!|||||||| IlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLeuIl 1224300 : attttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGAT : 1224246 109 : eProProAlaLeuAspIleIleAlaProLeuAsnValThrArgProArgGlnProM : 127 | !|||!.!||||||:!!:!!||||||||||||! !||||||||||||::!! !: eAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLeuL 1224245 : AAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTT : 1224189 128 : etPheArgAlaAsnTyrValIleIleLysValAspAspHisPhePheValThrTyr : 145 !!.!!! !!.!!:!|||:!!.!!||| ! ! ! !!!!:||||||!:! !..! !! euLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValAsn 1224188 : TGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAAT : 1224135 146 : ValHisMetAlaSerValAlaSerLeuGlyValPheIleIleValThrValAspSe : 164 !!|||:!: !!!! !!.!! !! ! !!! !.!.!!:|||:!!.!!||||||! PheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAspMe 1224134 : TTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATAT : 1224078 165 : rLeuTyrMetLeuIleIleHisHisAlaCysGlyLeuPheAspValCysGly : 181 !||||||!!: !|||||| !||| !||||||||||||! ||||||||| tLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaValCysGly 1224077 : GTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: gi|805752280|ref|XP_012143908.1| 89 181 . KQ414851.1 1224300 1224024 - 197 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224300 197 - . gene_id 7 ; sequence gi|805752280|ref|XP_012143908.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224300 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224300 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224300 197 - . alignment_id 7 ; Query gi|805752280|ref|XP_012143908.1| ; Align 1224301 90 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752280|ref|XP_012143908.1| PREDICTED: uncharacterized protein LOC100878986 isoform X1 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 147 Query range: 306 -> 351 Target range: 1228545 -> 1228410 307 : PheSerSerAsnTrpTyrGluMetProValLysTyrGlnLysIleLeuTyrMetMe : 325 !:!||||||!..||||||:!!:!: !!!.!|||!:!|||::!:!!:!!|||||||| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 326 : tIleIleArgCysAsnLysThrCysAsnLeuSerAlaGlyGlyLeuTyrAspMetA : 344 | !||||||..! ||| !!|||! !|||!!!|||||||||||||||!!:|||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 345 : snIleGluAsnPheGlyLysVal : 351 ||!!:|||||||||!.!!!.||| snMetGluAsnPheAlaAsnVal 1228433 : ACATGGAGAACTTTGCAAACGTT : 1228411 vulgar: gi|805752280|ref|XP_012143908.1| 306 351 . KQ414851.1 1228545 1228410 - 147 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1228545 147 - . gene_id 8 ; sequence gi|805752280|ref|XP_012143908.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228411 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1228545 147 - . alignment_id 8 ; Query gi|805752280|ref|XP_012143908.1| ; Align 1228546 307 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752301|ref|XP_012144307.1| PREDICTED: uncharacterized protein LOC100878986 isoform X5 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 526 Query range: 89 -> 331 Target range: 1234335 -> 1233246 90 : LeuTyrArgThrThrLeuLeuSerPheLeuMetValPheIleAlaIleProLeuIl : 108 !!!!:! ! !|||||||||||||||:!!:!:||||||:!: !:!!||||||:! PhePheSerAspThrLeuLeuSerPheMetValValPheLeuLeuValProLeuVa 1234335 : TTCTTCTCAGATACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGT : 1234281 109 : eProProAlaLeuAspIleIleAlaProLeuAsnValThrArgProArgGlnProM : 127 ! !||| !||||||:!!:!! !|||||||||! !|||||||||||||||! ! lPheProPheLeuAspValValLeuProLeuAsnGluThrArgProArgGlnGlnG 1234280 : TTTTCCATTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAG : 1234224 128 : etPheArgAlaAsnTyrValIleIleLysValAspAspHisPhePheValThrTyr : 145 ||||||!.!||||||:!! !.!! ! ! !! |||:!!|||||| !..!||| lyPheArgValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyr 1234223 : GATTCAGAGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTAC : 1234170 146 : ValHisMetAlaSerValAlaSerLeuGlyValPheIleIleValThrValAspSe : 164 !!!!.:!!|||!!!! !||| !:!!! !|||.!.||||||:!!||||||||||| PheGlnLeuAlaTrpGlyAlaValValValValMetIleIleIleThrValAspSe 1234169 : TTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTC : 1234113 165 : rLeuTyrMetLeuIleIleHisHisAlaCysGlyLeuPheAspValCys{Gl} > : 181 ||||||||||:!!||||||||||||||| !!|||:!!|||! !||||||{||} rLeuTyrMetIleIleIleHisHisAlaSerGlyMetPheAlaValCys{Gl}++ 1234112 : GTTGTACATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTGTGC{GG}gt. : 1234058 182 : >>> Target Intron 1 >>>> {y}TyrGlnValGlnMetAlaThrLysAsn : 190 213 bp {|} !!|||:!!..!! !! !||| !! +-{y}AspGlnIleMetThrIleIleLysTyr 1234057 : ........................ac{T}GATCAAATAATGACAATAATAAAGTAT : 1233822 191 : SerIleLeuSerTyrGluGluPheArgGlnCysValIleThrHisHisLysAlaLe : 209 !:! !! !! ! !..! !!!.!:!! ! ! !:!: ! ! ! ! !! AsnGlu***LeuAlaArgLeuLeuLysProThrAsnLeuCysPheCysTyrIleSe 1233821 : AATGAATAATTAGCCCGATTATTGAAACCGACTAACTTGTGCTTTTGTTACATTTC : 1233765 210 : uHisPhePheAsnThrLeuGlnGluCysSerGlnAsnMetAsnLeuMetLeuValG : 228 !...|||!:!:!!! !|||.!.||| !!|||!:!|||! !!|||!!:! !|||| rArgPheTyrAspIleLeuAsnGluSerSerArgAsnSerTyrLeuIleGlnValG 1233764 : CAGGTTTTACGATATTCTAAACGAGAGCAGTCGAAATAGCTACTTGATTCAGGTTG : 1233708 229 : lyIleAsnMetLeuLeuIleSerMetThrAlaValGln >>>> Target Intr : 241 ||:!:||||||:!! !||||||:!!|||||||||||| 80 bp lyLeuAsnMetMetGlyIleSerValThrAlaValGln+- 1233707 : GATTGAACATGATGGGCATTAGCGTGACCGCTGTCCAGgc................ : 1233667 242 : on 2 >>>> IleIleLeuTyrIleAspGlnProAlaAspAlaMetArgPheIle : 255 ! !:!!||| :!:|||::!||||||!!:|||:!:|||! ! ! ++ThrValLeuThrLeuAspArgProAlaGluAlaLeuArgCysAla 1233666 : .........agACAGTCCTCACACTGGACAGGCCGGCAGAAGCTCTTAGATGTGCT : 1233547 256 : LeuPheLeuIleAlaGluLysPheHisLeuLeuValIleSerLeuPheGlyGlnIl : 274 :!!||||||:!!||||||:!!|||||||||!!!:!!||||||||| !||||||! ValPheLeuValAlaGluGlnPheHisLeuPheIleIleSerLeuProGlyGlnTh 1233546 : GTGTTCCTTGTAGCGGAGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGAC : 1233490 275 : eLeuLeuAsnTyrAlaSerSerLeuProGluLys{Il} >>>> Target Intr : 286 !|||:!!:!!:!!..!!!!!.!||| !!:!! ! {||} 70 bp rLeuValAspHisCysThrLysLeuSerLysAsp{Il}++ 1233489 : ACTCGTGGATCATTGTACGAAACTATCGAAGGAT{AT}gt................ : 1233450 287 : on 3 >>>> {e}PheSerSerAsnTrpTyrGluMetProValLysTyrGlnLys : 300 {|}!:!||||||!..||||||:!!:!:|||!.!|||!:!|||::! ++{e}TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArg 1233449 : .........ag{A}TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGA : 1233342 301 : IleLeuTyrMetMetIleIleArgCysAsnLysThrCysAsnLeuSerAlaGlyGl : 319 :!!:!!|||! !||| !||||||..! ||| !!||| !|||!!!|||||||| ValIleTyrThrMetGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGl 1233341 : GTAATTTACACGATGCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGG : 1233285 320 : yLeuTyrAspMetAsnIleGluAsnPheGlyLysVal : 331 |||||||!!:||||||!!:|||||||||!.!!!.||| yLeuTyrGluMetAsnMetGluAsnPheAlaAsnVal 1233284 : ATTGTATGAAATGAACATGGAGAACTTTGCAAACGTT : 1233247 vulgar: gi|805752301|ref|XP_012144307.1| 89 331 . KQ414851.1 1234335 1233246 - 526 M 91 273 S 0 2 5 0 2 I 0 209 3 0 2 S 1 1 M 59 177 5 0 2 I 0 76 3 0 2 M 45 135 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233247 1234335 526 - . gene_id 1 ; sequence gi|805752301|ref|XP_012144307.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1234061 1234335 . - . KQ414851.1 exonerate:protein2genome:local exon 1234061 1234335 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234059 1234060 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233848 1234060 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233848 1233849 . - . intron_id 0 ; splice_site "AC" KQ414851.1 exonerate:protein2genome:local cds 1233670 1233847 . - . KQ414851.1 exonerate:protein2genome:local exon 1233670 1233847 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233668 1233669 . - . intron_id 2 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1233590 1233669 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1233590 1233591 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233453 1233589 . - . KQ414851.1 exonerate:protein2genome:local exon 1233453 1233589 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233451 1233452 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233383 1233452 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1233383 1233384 . - . intron_id 2 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233247 1233382 . - . KQ414851.1 exonerate:protein2genome:local exon 1233247 1233382 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233247 1234335 526 - . alignment_id 1 ; Query gi|805752301|ref|XP_012144307.1| ; Align 1234336 90 273 ; Align 1233847 182 177 ; Align 1233590 241 135 ; Align 1233382 287 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752301|ref|XP_012144307.1| PREDICTED: uncharacterized protein LOC100878986 isoform X5 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 429 Query range: 93 -> 331 Target range: 1243860 -> 1242661 94 : ThrLeuLeuSerPheLeuMetValPheIleAlaIleProLeuIleProProAlaLe : 112 ||||||!!!! !|||! !!!::!!|||:!! !.!!||||||||||||||| !|| ThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleLe 1243860 : ACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATT : 1243806 113 : uAspIleIleAlaProLeuAsnValThrArgProArgGlnProMetPheArgAlaA : 131 ||||:!!:!!:!!|||||||||! !|||||| !!||| ! :::...::: . uAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuG 1243805 : GGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgc : 1243749 132 : snTyrValIleIleLysValAspAspHisPhePheValThrTyrValHisMetAla : 149 ..||| :!:.!! ! :::::: :::|||::: ||||||:!!! !.! lnTyr---LeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGly 1243748 : aatac---cTGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGC : 1243698 150 : SerValAlaSerLeuGlyValPheIleIleValThrValAspSerLeuTyrMetLe : 168 !!! !:!!! !:!! !:!!.!.:!!|||:!!|||:!!|||:!!||||||:!!:! TrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValVa 1243697 : TGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGT : 1243641 169 : uIleIleHisHisAlaCysGlyLeuPheAspValCys{Gl} >>>> Target I : 181 !||||||||||||.!!||||||||||||! !||||||{||} 342 lIleIleHisHisThrCysGlyLeuPheAlaValCys{Gl}++ 1243640 : AATCATTCATCACACGTGTGGCTTATTCGCTGTTTGC{GG}gt............. : 1243598 182 : ntron 1 >>>> {y}TyrGlnValGlnMetAlaThrLysAsnSerIleLeuSer : 194 bp {|}|||.!.:!! |||...... ++{y}TyrAsnIle***SerLeuLysLysLysLysLys***Arg 1243597 : ............ag{T}TACAATATTtagtcgttaaaaaaaaaaaagaaataacga : 1243221 195 : TyrGluGluPheArgGlnCysValIleThrHisHisLysAlaLeuHisPhePheAs : 213 :!! !|||! !::! |||||| ||| ! !!! !! !|||:! ValGlnThrPheLeuArgPheValIlePheIleHisAsp---PheSerSerPheAs 1243220 : gTACAAACATTTCTAAGGttcgttatttttatacatgAT---TTCAGCTCTTTCGA : 1243167 214 : nThrLeuGlnGluCysSerGlnAsnMetAsnLeuMetLeuValGlyIleAsnMetL : 232 !|||:!!.!.||| !!!!...!.. !!|||.!.! !||||||:!!||||||: pThrIleAsnGluIleThrSerThrCysTyrLeuPheGlnValGlyLeuAsnMetI 1243166 : TACCATAAACGAAATCACTAGCACATGTTACTTGTTTCAAGTCGGACTTAATATGA : 1243110 233 : euLeuIleSerMetThrAlaValGln >>>> Target Intron 2 >>>> I : 241 !! !||||||:!!|||:!!|||! ! 77 bp leGlyIleSerValThrSerValLeu++ ++A 1243109 : TCGGTATTAGCGTGACGTCTGTTCTAgt.........................agG : 1243006 242 : leIleLeuTyrIleAspGlnProAlaAspAlaMetArgPheIleLeuPheLeuIle : 259 !.!!:!! !!:!!|||!:!|||! !!!: ! |||.!! !! !||||||||| laPheIleAsnLeuAspArgProGluGluPheAlaArgIleAlaCysPheLeuIle 1243005 : CCTTTATAAATCTAGATCGGCCTGAAGAATTTGCCAGAATTGCTTGTTTCCTTATA : 1242952 260 : AlaGluLysPheHisLeuLeuValIleSerLeuPheGlyGlnIleLeuLeuAsnTy : 278 |||:!!:!!.!!||||||||||||||||||:!! |||||||||:!! !:!! ! AlaGlnGlnLeuHisLeuLeuValIleSerValProGlyGlnIleIleThrAspGl 1242951 : GCTCAGCAACTCCACTTGTTAGTCATTAGTGTACCAGGGCAGATCATCACGGATCA : 1242895 279 : rAlaSerSerLeuProGluLys{Il} >>>> Target Intron 3 >>>> { : 286 ::!|||!.!||| !! ! {||} 72 bp { nSerSerLysLeuThrIleAsp{Il}++ ++{ 1242894 : AAGTTCAAAGTTGACCATTGAC{AT}gt.........................ag{ : 1242797 287 : e}PheSerSerAsnTrpTyrGluMetProValLysTyrGlnLysIleLeuTyrMet : 304 |}!:!!:!|||! ||||||:!!! |||||| ! !||||||||||||:!!!!: e}TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIle 1242796 : A}TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATATA : 1242745 305 : MetIleIleArgCysAsnLysThrCysAsnLeuSerAlaGlyGlyLeuTyrAspMe : 323 :!: !||||||! !..!||| !!|||!!.||| !|||||||||||||||!!:|| ValGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluMe 1242744 : GTACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAAT : 1242688 324 : tAsnIleGluAsnPheGlyLysVal : 331 |||||||||||||||||||..!||| tAsnIleGluAsnPheGlySerVal 1242687 : GAACATTGAGAATTTTGGATCAGTA : 1242662 vulgar: gi|805752301|ref|XP_012144307.1| 93 331 . KQ414851.1 1243860 1242661 - 429 M 39 117 G 1 0 M 47 141 S 0 2 5 0 2 I 0 338 3 0 2 S 1 1 M 26 78 G 1 0 M 32 96 5 0 2 I 0 73 3 0 2 M 45 135 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242662 1243860 429 - . gene_id 2 ; sequence gi|805752301|ref|XP_012144307.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1243601 1243860 . - . KQ414851.1 exonerate:protein2genome:local exon 1243601 1243860 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local splice5 1243599 1243600 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243259 1243600 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1243259 1243260 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1243084 1243258 . - . KQ414851.1 exonerate:protein2genome:local exon 1243084 1243258 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local splice5 1243082 1243083 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243007 1243083 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1243007 1243008 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242870 1243006 . - . KQ414851.1 exonerate:protein2genome:local exon 1242870 1243006 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242868 1242869 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242798 1242869 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1242798 1242799 . - . intron_id 2 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242662 1242797 . - . KQ414851.1 exonerate:protein2genome:local exon 1242662 1242797 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242662 1243860 429 - . alignment_id 2 ; Query gi|805752301|ref|XP_012144307.1| ; Align 1243861 94 117 ; Align 1243744 134 141 ; Align 1243258 182 78 ; Align 1243180 209 96 ; Align 1243007 241 135 ; Align 1242797 287 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752301|ref|XP_012144307.1| PREDICTED: uncharacterized protein LOC100878986 isoform X5 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 243 Query range: 239 -> 334 Target range: 1222717 -> 1222361 240 : GlnIleIleLeuTyrIleAspGlnProAlaAspAlaMetArgPheIleLeuPheLe : 258 ||| !|||:!! !!||||||!:!|||! !!!: !!!:|||.!! :!!|||:! GlnCysIleMetAsnIleAspArgProAspGluLeuIleArgLeuAlaMetPheVa 1222717 : CAGTGCATTATGAACATCGACCGACCTGACGAACTCATCAGGCTTGCGATGTTTGT : 1222663 259 : uIleAlaGluLysPheHisLeuLeuValIleSerLeuPheGlyGlnIleLeuLeuA : 277 !:!!|||:::|||||||||||||||:!!:!!|||||| !||||||!!:||||||: lValAlaGlnLysPheHisLeuLeuIleLeuSerLeuProGlyGlnMetLeuLeuA 1222662 : CGTAGctcagaaatttcatttgctcATCCTTAGTTTACCTGGGCAAATGTTGTTAG : 1222606 278 : snTyrAlaSerSerLeuProGluLys{Il} >>>> Target Intron 1 >>> : 286 !!:!!::!! !.!!||| !!!!:! !{||} 71 bp spHisSerLeuGlyLeuAlaAspIle{Il}++ 1222605 : ATCATAGTTTAGGATTGGCCGATATA{AT}gt........................ : 1222575 287 : > {e}PheSerSerAsnTrpTyrGluMetProValLysTyrGlnLysIleLeuTy : 303 {|}!:!:!!|||!!.|||||||||:!:||||||||| ||||||:!::!!|| ++{e}TyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTy 1222574 : .ag{T}TACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTA : 1222457 304 : rMetMetIleIleArgCysAsnLysThrCysAsnLeuSerAlaGlyGlyLeuTyrA : 322 |! !||| !!!:|||! !! ::! !!|||! |||!!!|||||||||:!!:!!! rThrMetGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisG 1222456 : CACGATGCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATG : 1222400 323 : spMetAsnIleGluAsnPheGlyLysValCysThrAsp : 334 !:||||||||||||!:!||||||! !||||||!.!:!! luMetAsnIleGluSerPheGlyIleValCysAsnAsn 1222399 : AGATGAACATCGAGAGTTTCGGAATAGTATGTAATAAT : 1222362 vulgar: gi|805752301|ref|XP_012144307.1| 239 334 . KQ414851.1 1222717 1222361 - 243 M 46 138 S 0 2 5 0 2 I 0 67 3 0 2 S 1 1 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222362 1222717 243 - . gene_id 3 ; sequence gi|805752301|ref|XP_012144307.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1222578 1222717 . - . KQ414851.1 exonerate:protein2genome:local exon 1222578 1222717 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1222576 1222577 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222507 1222577 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1222507 1222508 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222362 1222506 . - . KQ414851.1 exonerate:protein2genome:local exon 1222362 1222506 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222362 1222717 243 - . alignment_id 3 ; Query gi|805752301|ref|XP_012144307.1| ; Align 1222718 240 138 ; Align 1222506 287 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752301|ref|XP_012144307.1| PREDICTED: uncharacterized protein LOC100878986 isoform X5 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 236 Query range: 93 -> 181 Target range: 1229488 -> 1229224 94 : ThrLeuLeuSerPheLeuMetValPheIleAlaIleProLeuIleProProAlaLe : 112 .!!||||||! ! :!! ||||||:!: !:!!||||||.!! !|||||||| AlaLeuLeuPheAlaMetCysValPheLeuLeuValProLeuPheGlyProAlaLe 1229488 : GCTTTACTCTTCGCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCT : 1229434 113 : uAspIleIleAlaProLeuAsnValThrArgProArgGlnProMetPheArgAlaA : 131 |||||||:!! !|||! !|||! !|||||||||||||||! !:!!||||||!.!| uAspIleValLeuProSerAsnGluThrArgProArgGlnGlnLeuPheArgValA 1229433 : GGACATCGTCCTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTA : 1229377 132 : snTyrValIleIleLysValAspAspHisPhePheValThrTyrValHisMetAla : 149 |||||:!!|||.!! ! !! |||:!!|||||| !..!|||:!!!!.:!! ! snTyrIleIlePheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPhe 1229376 : ACTATATAATTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTT : 1229323 150 : SerValAlaSerLeuGlyValPheIleIleValThrValAspSerLeuTyrMetLe : 168 !!! !.!!! !:!! !|||.!. !|||:!!|||||||||||||||||||||:! TrpCysThrIleValLeuValMetAlaIleIleThrValAspSerLeuTyrMetIl 1229322 : TGGTGTACAATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGAT : 1229266 169 : uIleIleHisHisAlaCysGlyLeuPheAspValCysGly : 181 !||||||:!!|||||| !!|||:!!|||! !:!!|||||| eIleIleTyrHisAlaSerGlyMetPheAlaIleCysGly 1229265 : CATAATTTACCATGCCAGCGGAATGTTCGCTATATGCGGG : 1229225 vulgar: gi|805752301|ref|XP_012144307.1| 93 181 . KQ414851.1 1229488 1229224 - 236 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229488 236 - . gene_id 4 ; sequence gi|805752301|ref|XP_012144307.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229225 1229488 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229488 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229488 236 - . alignment_id 4 ; Query gi|805752301|ref|XP_012144307.1| ; Align 1229489 94 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752301|ref|XP_012144307.1| PREDICTED: uncharacterized protein LOC100878986 isoform X5 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 197 Query range: 89 -> 181 Target range: 1224300 -> 1224024 90 : LeuTyrArgThrThrLeuLeuSerPheLeuMetValPheIleAlaIleProLeuIl : 108 :::::: :!!|||! !! ! !!|||:!:|||!:!!!:::!.!!|||||||| IlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLeuIl 1224300 : attttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGAT : 1224246 109 : eProProAlaLeuAspIleIleAlaProLeuAsnValThrArgProArgGlnProM : 127 | !|||!.!||||||:!!:!!||||||||||||! !||||||||||||::!! !: eAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLeuL 1224245 : AAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTT : 1224189 128 : etPheArgAlaAsnTyrValIleIleLysValAspAspHisPhePheValThrTyr : 145 !!.!!! !!.!!:!|||:!!.!!||| ! ! ! !!!!:||||||!:! !..! !! euLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValAsn 1224188 : TGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAAT : 1224135 146 : ValHisMetAlaSerValAlaSerLeuGlyValPheIleIleValThrValAspSe : 164 !!|||:!: !!!! !!.!! !! ! !!! !.!.!!:|||:!!.!!||||||! PheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAspMe 1224134 : TTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATAT : 1224078 165 : rLeuTyrMetLeuIleIleHisHisAlaCysGlyLeuPheAspValCysGly : 181 !||||||!!: !|||||| !||| !||||||||||||! ||||||||| tLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaValCysGly 1224077 : GTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: gi|805752301|ref|XP_012144307.1| 89 181 . KQ414851.1 1224300 1224024 - 197 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224300 197 - . gene_id 5 ; sequence gi|805752301|ref|XP_012144307.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224300 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224300 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224300 197 - . alignment_id 5 ; Query gi|805752301|ref|XP_012144307.1| ; Align 1224301 90 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752301|ref|XP_012144307.1| PREDICTED: uncharacterized protein LOC100878986 isoform X5 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 147 Query range: 286 -> 331 Target range: 1228545 -> 1228410 287 : PheSerSerAsnTrpTyrGluMetProValLysTyrGlnLysIleLeuTyrMetMe : 305 !:!||||||!..||||||:!!:!: !!!.!|||!:!|||::!:!!:!!|||||||| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 306 : tIleIleArgCysAsnLysThrCysAsnLeuSerAlaGlyGlyLeuTyrAspMetA : 324 | !||||||..! ||| !!|||! !|||!!!|||||||||||||||!!:|||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 325 : snIleGluAsnPheGlyLysVal : 331 ||!!:|||||||||!.!!!.||| snMetGluAsnPheAlaAsnVal 1228433 : ACATGGAGAACTTTGCAAACGTT : 1228411 vulgar: gi|805752301|ref|XP_012144307.1| 286 331 . KQ414851.1 1228545 1228410 - 147 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1228545 147 - . gene_id 6 ; sequence gi|805752301|ref|XP_012144307.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228411 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1228545 147 - . alignment_id 6 ; Query gi|805752301|ref|XP_012144307.1| ; Align 1228546 287 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752313|ref|XP_012144604.1| PREDICTED: uncharacterized protein LOC100878875 isoform X2 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 252 Query range: 87 -> 205 Target range: 1234323 -> 1233851 88 : ThrLeuMetTrpAlaThrIleGlyPheIleTyrIleProLeuIleAsnProThrLe : 106 ||||||:!!! !! !:!!! !|||:!: :!!||||||:!! !||| !|| ThrLeuLeuSerPheMetValValPheLeuLeuValProLeuValPheProPheLe 1234323 : ACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTT : 1234269 107 : uAspLeuIleIleProLeuAsnGluThrArgProLysGluGlnLeuPheGlyValC : 125 ||||:!!:!!:!!|||||||||||||||||||||::!:!!||| !||| !!||| uAspValValLeuProLeuAsnGluThrArgProArgGlnGlnGlyPheArgValA 1234268 : GGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTA : 1234212 126 : ysTyrValPheIleAsnProAspAspTyrPheThrAlaValPheLeuHisMetGly : 143 !|||:!!!:!.!!:!! !! ||||||||| !::!|||!:!!!!!!.:!!!.! snTyrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyrPheGlnLeuAla 1234211 : ACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCC : 1234158 144 : TrpThrThrTrpValThrValTyrAsnIleIleThrValAspSerLeuTyrIleLe : 162 ||| !.!! |||..!||| ! !||||||||||||||||||||||||!!::! TrpGlyAlaValValValValMetIleIleIleThrValAspSerLeuTyrMetIl 1234157 : TGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGAT : 1234101 163 : uIleIleHisHisValCysGlyLeuPheAspValCys{Gl} >>>> Target I : 175 !||||||||||||!.! !!|||:!!|||! !||||||{||} 118 eIleIleHisHisAlaSerGlyMetPheAlaValCys{Gl}++ 1234100 : AATAATTCACCATGCCAGCGGAATGTTCGCCGTGTGC{GG}gt............. : 1234058 176 : ntron 1 >>>> {y}TyrGlnIleGluThrIlePheLysArgSerAsnLeuGln : 188 bp {|} !!..!||| ! !! ! !! !..!|||! ! ! +-{y}AspSerIleTyrGlyAsnAspIleSerGluAsnHisThr 1234057 : ............aa{G}GACTCAATCTATGGCAATGACATTTCTGAGAATCATACG : 1233905 189 : HisTyrGlnPheLysGlnCysValIleHisHisHisLysAlaLeuGluPhe : 205 ||| ! |||||||||!:!||||||! ! ||| !!||||||:!!|||||| HisGluGlnPheLysArgCysValThrThrHisAspLysAlaIleGluPhe 1233904 : CACGAACAGTTCAAACGATGCGTGACTACGCACGATAAAGCTATCGAGTTT : 1233852 vulgar: gi|805752313|ref|XP_012144604.1| 87 205 . KQ414851.1 1234323 1233851 - 252 M 87 261 S 0 2 5 0 2 I 0 114 3 0 2 S 1 1 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233852 1234323 252 - . gene_id 1 ; sequence gi|805752313|ref|XP_012144604.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1234061 1234323 . - . KQ414851.1 exonerate:protein2genome:local exon 1234061 1234323 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234059 1234060 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233943 1234060 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233943 1233944 . - . intron_id 0 ; splice_site "AA" KQ414851.1 exonerate:protein2genome:local cds 1233852 1233942 . - . KQ414851.1 exonerate:protein2genome:local exon 1233852 1233942 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233852 1234323 252 - . alignment_id 1 ; Query gi|805752313|ref|XP_012144604.1| ; Align 1234324 88 261 ; Align 1233942 176 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752313|ref|XP_012144604.1| PREDICTED: uncharacterized protein LOC100878875 isoform X2 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 245 Query range: 87 -> 205 Target range: 1229488 -> 1229016 88 : ThrLeuMetTrpAlaThrIleGlyPheIleTyrIleProLeuIleAsnProThrLe : 106 .!!|||:!:!::|||! ! !! !|||:!: :!!||||||.!!..!|||.!!|| AlaLeuLeuPheAlaMetCysValPheLeuLeuValProLeuPheGlyProAlaLe 1229488 : GCTTTACTCTTCGCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCT : 1229434 107 : uAspLeuIleIleProLeuAsnGluThrArgProLysGluGlnLeuPheGlyValC : 125 ||||:!!:!!:!!|||! !|||||||||||||||::!:!!||||||||| !!||| uAspIleValLeuProSerAsnGluThrArgProArgGlnGlnLeuPheArgValA 1229433 : GGACATCGTCCTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTA : 1229377 126 : ysTyrValPheIleAsnProAspAspTyrPheThrAlaValPheLeuHisMetGly : 143 !|||:!!.!!.!!:!!! !! ||||||||| ! !|||!:!:!!!!.:!! ! snTyrIleIlePheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPhe 1229376 : ACTATATAATTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTT : 1229323 144 : TrpThrThrTrpValThrValTyrAsnIleIleThrValAspSerLeuTyrIleLe : 162 ||| !||| ||| !||| !||||||||||||||||||||||||!!::! TrpCysThrIleValLeuValMetAlaIleIleThrValAspSerLeuTyrMetIl 1229322 : TGGTGTACAATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGAT : 1229266 163 : uIleIleHisHisValCysGlyLeuPheAspValCys{Gl} >>>> Target I : 175 !||||||:!!|||!.! !!|||:!!|||! !:!!|||{||} 118 eIleIleTyrHisAlaSerGlyMetPheAlaIleCys{Gl}++ 1229265 : CATAATTTACCATGCCAGCGGAATGTTCGCTATATGC{GG}gt............. : 1229223 176 : ntron 1 >>>> {y}TyrGlnIleGluThrIlePheLysArgSerAsnLeuGln : 188 bp {|} !!..!|||!!:!.!! ! !! !..!|||! ! ! --{y}AspSerIleAspAsnSerAsnIleSerGlnAsnHisThr 1229222 : ............gt{G}GACTCAATCGACAACAGTAACATTTCTCAAAATCATACA : 1229070 189 : HisTyrGlnPheLysGlnCysValIleHisHisHisLysAlaLeuGluPhe : 205 ||| ! |||||||||!:!||||||! ! ||| !!||||||:!!:!!||| HisGluGlnPheLysArgCysValThrMetHisAspLysAlaIleLysPhe 1229069 : CACGAACAGTTCAAACGATGCGTGACTATGCACGATAAAGCTATCAAGTTT : 1229017 vulgar: gi|805752313|ref|XP_012144604.1| 87 205 . KQ414851.1 1229488 1229016 - 245 M 87 261 S 0 2 5 0 2 I 0 114 3 0 2 S 1 1 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229017 1229488 245 - . gene_id 2 ; sequence gi|805752313|ref|XP_012144604.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1229226 1229488 . - . KQ414851.1 exonerate:protein2genome:local exon 1229226 1229488 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1229224 1229225 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1229108 1229225 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1229108 1229109 . - . intron_id 0 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local cds 1229017 1229107 . - . KQ414851.1 exonerate:protein2genome:local exon 1229017 1229107 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229017 1229488 245 - . alignment_id 2 ; Query gi|805752313|ref|XP_012144604.1| ; Align 1229489 88 261 ; Align 1229107 176 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752313|ref|XP_012144604.1| PREDICTED: uncharacterized protein LOC100878875 isoform X2 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 218 Query range: 227 -> 325 Target range: 1233610 -> 1233246 228 : IleSerThrThrAlaValGlnIleLeuMetHisMetAspGlnProLeuAspSerAl : 246 :::..!!.! !:!! !!|||! !:!!:!: :!!|||::!||| !!!::!! LeuAspAsnPheSerPheGlnThrValLeuThrLeuAspArgProAlaGluAlaLe 1233610 : ctcGATAACTTTTCCTTCCAGACAGTCCTCACACTGGACAGGCCGGCAGAAGCTCT : 1233556 247 : aArgPheIleLeuPhePheValCysSerHisIleHisLeuTyrIleIleSerLeuP : 265 !|||! ! !:!!|||.!!|||.....!!!..!!||||||!:!|||||||||||| uArgCysAlaValPheLeuValAlaGluGlnPheHisLeuPheIleIleSerLeuP 1233555 : TAGATGTGCTGTGTTCCTTGTAGCGGAGCAATTTCATTTGTTCATCATTAGCTTAC : 1233499 266 : heGlyGlnIleIleLeuAsnHisSerLysThrLeuAlaGluArg{Il} >>>> T : 280 !||||||! !:!!:!!:!!|||!!!! !! !|||:!!:!! !{||} roGlyGlnThrLeuValAspHisCysThrLysLeuSerLysAsp{Il}++ 1233498 : CTGGACAGACACTCGTGGATCATTGTACGAAACTATCGAAGGAT{AT}gt...... : 1233450 281 : arget Intron 1 >>>> {e}TyrSerCysAsnTrpTyrGlyIleProIleLy : 291 70 bp {|}||||||! !!..|||||| !:!!||| !|| ++{e}TyrSerSerThrTrpTyrLysValProAlaLy 1233449 : ...................ag{A}TACTCTTCCACGTGGTATAAAGTACCGGCAAA : 1233351 292 : sPheGlnLysLeuLeuCysIleMetIleLeuArgCysSerLysProAlaIleLeuS : 310 |||||||::!:!!:!!! !! ||| !:!!|||..! !||||||..!:!!|||! sPheGlnArgValIleTyrThrMetGlnIleArgAlaLeuLysProCysValLeuT 1233350 : ATTTCAGCGAGTAATTTACACGATGCAAATAAGGGCTCTAAAGCCGTGTGTTTTGA : 1233294 311 : erAlaGlyGlyLeuTyrAspMetAsnMetGluAsnTyrGlyLysVal : 325 !!|||||||||||||||!!:|||||||||||||||!:!!.!!!.||| hrAlaGlyGlyLeuTyrGluMetAsnMetGluAsnPheAlaAsnVal 1233293 : CTGCAGGTGGATTGTATGAAATGAACATGGAGAACTTTGCAAACGTT : 1233247 vulgar: gi|805752313|ref|XP_012144604.1| 227 325 . KQ414851.1 1233610 1233246 - 218 M 52 156 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233247 1233610 218 - . gene_id 3 ; sequence gi|805752313|ref|XP_012144604.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233453 1233610 . - . KQ414851.1 exonerate:protein2genome:local exon 1233453 1233610 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233451 1233452 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233383 1233452 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233383 1233384 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233247 1233382 . - . KQ414851.1 exonerate:protein2genome:local exon 1233247 1233382 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233247 1233610 218 - . alignment_id 3 ; Query gi|805752313|ref|XP_012144604.1| ; Align 1233611 228 156 ; Align 1233382 281 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752313|ref|XP_012144604.1| PREDICTED: uncharacterized protein LOC100878875 isoform X2 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 208 Query range: 87 -> 175 Target range: 1243860 -> 1243599 88 : ThrLeuMetTrpAlaThrIleGlyPheIleTyrIleProLeuIleAsnProThrLe : 106 ||||||.!.!:: !:!!||| !|||:!!! .!!||||||||| |||! !|| ThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleLe 1243860 : ACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATT : 1243806 107 : uAspLeuIleIleProLeuAsnGluThrArgProLysGluGlnLeuPheGlyValC : 125 ||||:!!:!! !|||||||||||||||||| !!::! !::::::... ::: uAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuG 1243805 : GGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgc : 1243749 126 : ysTyrValPheIleAsnProAspAspTyrPheThrAlaValPheLeuHisMetGly : 143 |||:!!||| :!! ::: ||| ::::::::::!!:!!! ||| lnTyrLeuPhe---AspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGly 1243748 : aataccTGTTC---GACAtggagaagaatttttattcattatacGTCTACACTGGC : 1243698 144 : TrpThrThrTrpValThrValTyrAsnIleIleThrValAspSerLeuTyrIleLe : 162 ||| !:!!!:::!!|||:!! !|||||||||:!!|||:!!||||||:!::! TrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValVa 1243697 : TGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGT : 1243641 163 : uIleIleHisHisValCysGlyLeuPheAspValCysGly : 175 !||||||||||||..!||||||||||||! !||||||||| lIleIleHisHisThrCysGlyLeuPheAlaValCysGly 1243640 : AATCATTCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: gi|805752313|ref|XP_012144604.1| 87 175 . KQ414851.1 1243860 1243599 - 208 M 41 123 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243860 208 - . gene_id 4 ; sequence gi|805752313|ref|XP_012144604.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243860 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243860 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243860 208 - . alignment_id 4 ; Query gi|805752313|ref|XP_012144604.1| ; Align 1243861 88 123 ; Align 1243738 130 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752313|ref|XP_012144604.1| PREDICTED: uncharacterized protein LOC100878875 isoform X2 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 197 Query range: 95 -> 175 Target range: 1224264 -> 1224024 96 : PheIleTyrIleProLeuIleAsnProThrLeuAspLeuIleIleProLeuAsnGl : 114 !:!!!: !.!!|||||||||||||||..!||||||:!!:!! ||||||||||| TyrMetSerPheProLeuIleAsnProValLeuAspValValAlaProLeuAsnGl 1224264 : TATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGA : 1224210 115 : uThrArgProLysGluGlnLeuPheGlyValCysTyrValPheIleAsnProAspA : 133 ||||||||||:::..!! |||.!! !||| !!|||:!!||||||:!! ! !!! uThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleAspGluTyrG 1224209 : GACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACG : 1224153 134 : spTyrPheThrAlaValPheLeuHisMetGlyTrpThrThrTrpValThrValTyr : 151 !::!!||| !::!||| !!!!|||:!: ! !:!..! ! !! ! luHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSerCysGlyMet 1224152 : AGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATG : 1224099 152 : AsnIleIleThrValAspSerLeuTyrIleLeuIleIleHisHisValCysGlyLe : 170 ! ||||||.!!||||||! !||||||||| !|||||| !|||:!!|||||||| MetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCysGlyLe 1224098 : ATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTGCGGATT : 1224042 171 : uPheAspValCysGly : 175 ||||! ||||||||| uPheAlaValCysGly 1224041 : GTTCGCAGTGTGTGGG : 1224025 vulgar: gi|805752313|ref|XP_012144604.1| 95 175 . KQ414851.1 1224264 1224024 - 197 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224264 197 - . gene_id 5 ; sequence gi|805752313|ref|XP_012144604.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224264 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224264 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224264 197 - . alignment_id 5 ; Query gi|805752313|ref|XP_012144604.1| ; Align 1224265 96 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752313|ref|XP_012144604.1| PREDICTED: uncharacterized protein LOC100878875 isoform X2 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 183 Query range: 86 -> 175 Target range: 1240088 -> 1239821 87 : ValThrLeuMetTrpAlaThrIleGlyPheIleTyrIleProLeuIleAsnProTh : 105 |||..!|||.!.! ... ... |||::: :!!|||:::... ||| ValValLeuPheSerValLeuPheIlePheLeuValValProIlePheProProLe 1240088 : GTCGTTTTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcctcctct : 1240034 106 : rLeuAspLeuIleIleProLeuAsnGluThrArgProLysGluGlnLeuPheGlyV : 124 ||||||:!!:!!! !|||||||||||||||||| !!::::::::::::||| | uLeuAspIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIlePheLysV 1240033 : tctggACATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatattcaaag : 1239977 125 : alCysTyrValPheIleAsnProAspAspTyrPheThrAlaValPheLeuHisMet : 142 || !|||:!!.!!|||:!! !|||!!: ! ! ! !..!!:!!!!|||:!! alAsnTyrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPheHisLeu 1239976 : ttaaTTACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTTCACTTG : 1239923 143 : GlyTrpThrThrTrpValThrValTyrAsnIleIleThrValAspSerLeuTyrIl : 161 ..!||||||||| ..! !! ! ::!:!::!!!:! !!!:! !:!!|||:! SerTrpThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIleTyrVa 1239922 : TCTTGGACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGT : 1239866 162 : eLeuIleIleHisHisValCysGlyLeuPheAspValCysGly : 175 !|||:!!|||||||||..! !!|||||||||! !|||..!||| lLeuLeuIleHisHisThrSerGlyLeuPheAlaValAlaGly 1239865 : CCTTCTTATTCATCATACCAGCGGTCTGTTTGCTGTGGCTGgg : 1239822 vulgar: gi|805752313|ref|XP_012144604.1| 86 175 . KQ414851.1 1240088 1239821 - 183 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240088 183 - . gene_id 6 ; sequence gi|805752313|ref|XP_012144604.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239822 1240088 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240088 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240088 183 - . alignment_id 6 ; Query gi|805752313|ref|XP_012144604.1| ; Align 1240089 87 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752313|ref|XP_012144604.1| PREDICTED: uncharacterized protein LOC100878875 isoform X2 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 138 Query range: 280 -> 325 Target range: 1228545 -> 1228410 281 : TyrSerCysAsnTrpTyrGlyIleProIleLysPheGlnLysLeuLeuCysIleMe : 299 ||||||! !!..|||||| !:!! !! !|||||||||::!:!!:!!! !!!:|| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 300 : tIleLeuArgCysSerLysProAlaIleLeuSerAlaGlyGlyLeuTyrAspMetA : 318 | !:!!|||..! !||||||..!||||||!!!|||||||||||||||!!:|||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 319 : snMetGluAsnTyrGlyLysVal : 325 |||||||||||!:!!.!!!.||| snMetGluAsnPheAlaAsnVal 1228433 : ACATGGAGAACTTTGCAAACGTT : 1228411 vulgar: gi|805752313|ref|XP_012144604.1| 280 325 . KQ414851.1 1228545 1228410 - 138 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1228545 138 - . gene_id 7 ; sequence gi|805752313|ref|XP_012144604.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228411 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1228545 138 - . alignment_id 7 ; Query gi|805752313|ref|XP_012144604.1| ; Align 1228546 281 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752313|ref|XP_012144604.1| PREDICTED: uncharacterized protein LOC100878875 isoform X2 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 280 -> 326 Target range: 1222505 -> 1222367 281 : TyrSerCysAsnTrpTyrGlyIleProIleLysPheGlnLysLeuLeuCysIleMe : 299 |||:!!! !!!.||||||! !:!!|||:!!||| |||||||||:!!! !! || TyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTyrThrMe 1222505 : TACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTACACGAT : 1222451 300 : tIleLeuArgCysSerLysProAlaIleLeuSerAlaGlyGlyLeuTyrAspMetA : 318 | !:!!|||! !! !::!|||..!||||||!!!|||||||||:!!:!!!!:|||| tGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisGluMetA 1222450 : GCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATGAGATGA : 1222394 319 : snMetGluAsnTyrGlyLysValCys : 326 ||!!:|||!:!!:!|||! !|||||| snIleGluSerPheGlyIleValCys 1222393 : ACATCGAGAGTTTCGGAATAGTATGT : 1222368 vulgar: gi|805752313|ref|XP_012144604.1| 280 326 . KQ414851.1 1222505 1222367 - 132 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222368 1222505 132 - . gene_id 8 ; sequence gi|805752313|ref|XP_012144604.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1222368 1222505 . - . KQ414851.1 exonerate:protein2genome:local exon 1222368 1222505 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222368 1222505 132 - . alignment_id 8 ; Query gi|805752313|ref|XP_012144604.1| ; Align 1222506 281 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752313|ref|XP_012144604.1| PREDICTED: uncharacterized protein LOC100878875 isoform X2 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 264 -> 325 Target range: 1242844 -> 1242661 265 : PheGlyGlnIleIleLeuAsnHisSerLysThrLeuAlaGluArgIleTyrSerCy : 283 ||| ...::! !|||||| ||| !.!! !|||!:!! PheGlnSerValProLeuAsnIlePhePheThrAsnPheThrAsnArgTyrAsnSe 1242844 : tttcaatcagtTCCActcaatatattttttactaattttaccAATAGATATAACTC : 1242790 284 : sAsnTrpTyrGlyIleProIleLysPheGlnLysLeuLeuCysIleMetIleLeuA : 302 ! |||||| !! !|||:!: !.!!||||||:!!||| !|||:!: !:!!| rMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIleValGlnIleA 1242789 : GATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATATAGTACAAATAA : 1242733 303 : rgCysSerLysProAlaIleLeuSerAlaGlyGlyLeuTyrAspMetAsnMetGlu : 320 ||! !.!!||||||..!! !||| !|||||||||||||||!!:||||||!!:||| rgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluMetAsnIleGlu 1242732 : GGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAATGAACATTGAG : 1242679 321 : AsnTyrGlyLysVal : 325 |||!:!|||..!||| AsnPheGlySerVal 1242678 : AATTTTGGATCAGTA : 1242662 vulgar: gi|805752313|ref|XP_012144604.1| 264 325 . KQ414851.1 1242844 1242661 - 126 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242662 1242844 126 - . gene_id 9 ; sequence gi|805752313|ref|XP_012144604.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1242662 1242844 . - . KQ414851.1 exonerate:protein2genome:local exon 1242662 1242844 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242662 1242844 126 - . alignment_id 9 ; Query gi|805752313|ref|XP_012144604.1| ; Align 1242845 265 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752313|ref|XP_012144604.1| PREDICTED: uncharacterized protein LOC100878875 isoform X2 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 233 -> 309 Target range: 1238825 -> 1238370 234 : GlnIleLeuMetHisMetAspGlnProLeuAspSerAlaArgPheIleLeuPhePh : 252 |||! !:!! !:!!!!:|||.!.||| !! :!! !||| ! ! ! !!!: GlnThrValGlyAsnIleAspAspProThrValAlaLeuArgAsnAlaThrValTr 1238825 : CAGACAGTGGGGAATATAGACGATCCGACAGTAGCTTTGAGAAACGCTACGGTCTG : 1238771 253 : eValCysSerHisIleHisLeuTyrIleIleSerLeuPheGlyGlnIleIleLeuA : 271 :! !..!!.!!!.|||||||||!:!|||||||||:!! !||||||:!::!!:!!: pGlyAlaLysGlnIleHisLeuPheIleIleSerIleProGlyGlnValLeuIleA 1238770 : GGGGGCTAAGCAAATTCACCTGTTCATCATCAGTATACCTGGACAGGTGCTTATAG : 1238714 272 : snHisSerLysThrLeuAlaGluArg{Il} >>>> Target Intron 1 >>> : 280 !!|||!!! ! !|||:!!.!. !{||} 227 bp spHisCysValGluLeuSerAsnAsp{Il}+- 1238713 : ATCATTGTGTGGAGCTGTCAAACGAC{AT}ga........................ : 1238683 281 : > {e}TyrSerCysAsnTrpTyrGlyIleProIleLysPheGlnLysLeuLeuCy : 297 {|}||||||! !!!.||||||..!! ! !!!::!! !:!!|||:!!||| ++{e}TyrSerSerLysTrpTyrAsnAsnGlyMetGluAlaLysLysIleLeuGl 1238682 : .ag{A}TACTCCTCCAAATGGTACAATAACGGAATGGAAGCTAAGAAAATACTTCA : 1238409 298 : sIleMetIleLeuArgCysSerLysProAlaIleLeu : 309 :!!||| !! !|||..!|||||||||..!|||||| nValMetGlnGlnArgAlaSerLysProCysIleLeu 1238408 : AGTAATGCAACAGAGAGCTAGCAAACCGTGTATATTA : 1238371 vulgar: gi|805752313|ref|XP_012144604.1| 233 309 . KQ414851.1 1238825 1238370 - 107 M 46 138 S 0 2 5 0 2 I 0 223 3 0 2 S 1 1 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1238371 1238825 107 - . gene_id 10 ; sequence gi|805752313|ref|XP_012144604.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1238686 1238825 . - . KQ414851.1 exonerate:protein2genome:local exon 1238686 1238825 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1238684 1238685 . - . intron_id 1 ; splice_site "GA" KQ414851.1 exonerate:protein2genome:local intron 1238459 1238685 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1238459 1238460 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1238371 1238458 . - . KQ414851.1 exonerate:protein2genome:local exon 1238371 1238458 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1238371 1238825 107 - . alignment_id 10 ; Query gi|805752313|ref|XP_012144604.1| ; Align 1238826 234 138 ; Align 1238458 281 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754618|ref|XP_012138745.1| PREDICTED: uncharacterized protein LOC100875437 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1127 Query range: 8 -> 404 Target range: 1235257 -> 1233123 9 : SerAsnValTyrAsnIleProTyrCysLysMetLeuArgLysTyrLeuLeuLeuPh : 27 :::...::::::...||| !:!!! !:!! !|||:::|||:::||| ..... AsnGluIlePheGlnIleGlnHisTyrGlnProLeuGlnLysPheLeuGlnPheLe 1235257 : aacgaaatattccaaatacaACATTATCAACCGcttcagaaatttttacaattttt : 1235203 28 : eGlyGlnAspProTyrGlnGlyAsnGlyThrArgAsnValIleThrValValMetV : 46 .||||||||||||! ||| !!:!!|||||||||..! !|||..! !!||||||| uGlyGlnAspProSerGlnArgAspGlyThrArgGlySerIleValPheValMetV 1235202 : aggaCAAGATCCGTCACAAAGAGATGGAACCAGGGGTAGTATTGTATTTGTAATGG : 1235146 47 : alLeuGlyLeuLeuGlyValIleValProThr >>>> Target Intron 1 > : 57 |||||.!!:!!||||||:!!:!!:!!|||||| 343 bp alLeuSerValLeuGlyIleLeuIleProThr++ 1235145 : TGCTTAGTGTGTTAGGCATTCTTATTCCGacggt...................... : 1235111 58 : >>> SerIleGluValTyrValSerLeuLeuGluLysAspMetAspAlaValIle : 73 ! !||||||:!!||||||..!|||! !||||||:!!||||||||||||||| ++PheIleGluIleTyrValGlnLeuCysGluLysAsnMetAspAlaValIle 1235110 : ...agTTTATCGAGATATATGTACAACTTTGTGAGAAGAATATGGACGCAGTGATC : 1234722 74 : GluCysMetProHisLeuIleAlaAlaIleThrThrIleValLysIleLeuAsnGl : 92 ||||||:!!|||:!! !||||||||| |||!:!:!:||||||:!:||||||! GluCysLeuProAsnGlyIleAlaAlaAlaThrSerValValLysLeuLeuAsnVa 1234721 : GAGTGTTTGCCGAATGGTATCGCAGCCGCGACCAGCGTGGTGAAATTGTTGAACGT : 1234665 93 : yHisLeuAsnLysGluAsn >>>> Target Intron 2 >>>> PheArgAr : 101 !:!!||||||!:!|||||| 75 bp |||::::: lTyrLeuAsnArgGluAsn++ ++PheGlnLy 1234664 : TTACTTAAACAGGGAAAATgt.........................agtttcaaaa : 1234563 102 : gLeuTyrGlnLeuMetIleGluGluTrpGluLeuLeuGluMetAsnAsnGluValA : 120 ::::|||...|||:!!! !..!|||||||||! !|||..!||||||:!!|||:!! sMetTyrAspLeuValThrArgGluTrpGluGlnLeuArgMetAsnAspGluLeuH 1234562 : aatgtatgaTCTTGTGACAAGAGAGTGGGAGCAGTTGAGGATGAACGACGAGTTGC : 1234506 121 : spValLeuAspLysIleThrGluGlnGlySerLysIleAlaGlnLeuTyrArg{S} : 138 !!||||||!!: ! |||||| !||||||.!!|||:!!||||||!!!||||||{!} isValLeuGluAspIleThrMetGlnGlyGlyLysLeuAlaGlnPheTyrArg{A} 1234505 : ATGTGCTTGAAGACATTACCATGCAAGGTGGTAAACTCGCGCAATTCTACAGA{A} : 1234452 139 : >>>> Target Intron 3 >>>> {er}ThrLeuLeuGlyAlaLeuGlyIl : 146 126 bp {:!}|||||||||..! !:!!! !:! ++ ++{sn}ThrLeuLeuSerPheMetValVa 1234451 : gt.........................ag{AT}ACATTACTGTCCTTCATGGTAGT : 1234302 147 : ePheLeuMetIleProLeuIleAlaProLeuLeuAspValValLeuProLeuAsnG : 165 !||||||:!!:!!||||||:!! !|||!!!||||||||||||||||||||||||| lPheLeuLeuValProLeuValPheProPheLeuAspValValLeuProLeuAsnG 1234301 : TTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGTCGTCCTTCCGTTAAATG : 1234245 166 : luThrArgProArgGlnGlnLeuPheLysValAsnTyrValValPheAspGluArg : 183 |||||||||||||||||||| !|||!:!|||||||||:!! !||||||||| ! luThrArgProArgGlnGlnGlyPheArgValAsnTyrLeuTyrPheAspGluAla 1234244 : AAACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTATATTTCGACGAAGCG : 1234191 184 : AspTyrPhePheProValTyrPheGlnLeuAlaIleGlyAlaPheIleIleValTh : 202 |||||||||||| !|||||||||||||||||| |||||| !!:!!:!!|||! AspTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaValValValValMe 1234190 : GACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCAT : 1234134 203 : rGlyIleIleThrIleAspSerLeuTyrMetValIleIleHisTyrAsnSerGlyM : 221 ! !|||||||||:!!|||||||||||||||:!!|||||||||:!! !||||||| tIleIleIleThrValAspSerLeuTyrMetIleIleIleHisHisAlaSerGlyM 1234133 : GATCATAATCACCGTAGACTCGTTGTACATGATAATAATTCACCATGCCAGCGGAA : 1234077 222 : etPheAlaValCys{Gl} >>>> Target Intron 4 >>>> {y}TyrGln : 228 ||||||||||||||{||} 88 bp {|}|||||| etPheAlaValCys{Gl}++ ++{y}TyrGln 1234076 : TGTTCGCCGTGTGC{GG}gt.........................ag{C}TACCAA : 1233968 229 : ValGlnLysAlaThrLysCysTyrAspMetAsnSerAspArgThrThrValAlaGl : 247 |||:!!! !||||||:!!! ! ! ||| ! !! !! !!.! !! ! !! !.! ValLysThrAlaThrGluTyrLysAspSerIleTyrGlyAsnAspIleSerGluAs 1233967 : GTGAAAACAGCAACAGAATATAAGGACTCAATCTATGGCAATGACATTTCTGAGAA : 1233911 248 : uAspAspCysGlnArgPheLysArgCysValLeuThrHisHisLysAlaLeu{Gl} : 265 . !! !:!!!:!||||||||||||||| !|||||| !!||||||:!!{:!} nHisThrHisGluGlnPheLysArgCysValThrThrHisAspLysAlaIle{Gl} 1233910 : TCATACGCACGAACAGTTCAAACGATGCGTGACTACGCACGATAAAGCTATC{GA} : 1233857 266 : >>>> Target Intron 5 >>>> {n}PheTyrGluIleLeuLysGluAsn : 273 95 bp {!}||||||!!:||||||!!.|||!:! ++ ++{u}PheTyrAspIleLeuAsnGluSer 1233856 : gt.........................ag{G}TTTTACGATATTCTAAACGAGAGC : 1233738 274 : SerThrAsnSerTyrLeuLeuGlnIleGlyPheAsnMetIleGlyIleSerValTh : 292 ||| !||||||||||||:!!|||:!!|||!!.||||||!!:|||||||||||||| SerArgAsnSerTyrLeuIleGlnValGlyLeuAsnMetMetGlyIleSerValTh 1233737 : AGTCGAAATAGCTACTTGATTCAGGTTGGATTGAACATGATGGGCATTAGCGTGAC : 1233681 293 : rAlaValGln >>>> Target Intron 6 >>>> ThrValLeuAsnLeuAs : 301 |||||||||| 80 bp |||||||||!..||| rAlaValGln+- ++ThrValLeuThrLeu-- 1233680 : CGCTGTCCAGgc.........................agACAGTCCTCACACTG-- : 1233574 302 : pSerAspLysThrGluGluAlaValArgThrAlaValPheLeuGlyAlaGluGlnP : 320 |||!:! !!! !||||||:!!||| !||||||||||||! !|||||||||| ----AspArgProAlaGluAlaLeuArgCysAlaValPheLeuValAlaGluGlnP 1233573 : ----GACAGGCCGGCAGAAGCTCTTAGATGTGCTGTGTTCCTTGTAGCGGAGCAAT : 1233523 321 : heHisLeuPheValIleSerLeuProGlyGlnValLeuIleAspHisCysSerGlu : 338 |||||||||||:!!||||||||||||||||||..!|||:!:|||||||||!!!:!! heHisLeuPheIleIleSerLeuProGlyGlnThrLeuValAspHisCysThrLys 1233522 : TTCATTTGTTCATCATTAGCTTACCTGGACAGACACTCGTGGATCATTGTACGAAA : 1233469 339 : LeuValValHis{Le} >>>> Target Intron 7 >>>> {u}TyrCysSe : 346 ||| ! ! !!{:!} 70 bp {!}|||! !|| LeuSerLysAsp{Il}++ ++{e}TyrSerSe 1233468 : CTATCGAAGGAT{AT}gt.........................ag{A}TACTCTTC : 1233375 347 : rThrTrpHisGlnAlaProIleLysIleGlnArgMetIleTyrLeuMetGlnIleA : 365 |||||||:!!:!!!.!||| !|||.!!||||||:!:|||||| !|||||||||| rThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMetGlnIleA 1233374 : CACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGATGCAAATAA : 1233318 366 : rgAlaSerLysLeuCysIleLeuThrAlaGlyGlyLeuTyrGlnIleAsnMetGlu : 383 ||||| !|||! !|||:!!|||||||||||||||||||||:!!!!:||||||||| rgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetAsnMetGlu 1233317 : GGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGAACATGGAG : 1233264 384 : AsnPheAlaSer >>>> Target Intron 8 >>>> AlaPheArgMetCys : 392 |||||||||!:! 75 bp .!!|||!:!! !||| AsnPheAlaAsn++ ++ThrPheLysThrCys 1233263 : AACTTTGCAAACgt.........................agaCATTCAAAACGTGC : 1233162 393 : MetSerTyrIleThrMetLeuLeuSerValArgGlu : 404 |||||||||.!!|||||||||:!!|||:!!|||||| MetSerTyrPheThrMetLeuMetSerLeuArgGlu 1233161 : ATGTCATACTTCACAATGCTGATGTCACTTAGAGAA : 1233124 vulgar: gi|805754618|ref|XP_012138745.1| 8 404 . KQ414851.1 1235257 1233123 - 1127 M 48 144 5 0 2 I 0 339 3 0 2 M 42 126 5 0 2 I 0 71 3 0 2 M 39 117 S 0 1 5 0 2 I 0 122 3 0 2 S 1 2 M 87 261 S 0 2 5 0 2 I 0 84 3 0 2 S 1 1 M 38 114 S 0 2 5 0 2 I 0 91 3 0 2 S 1 1 M 30 90 5 0 2 I 0 76 3 0 2 M 5 15 G 2 0 M 40 120 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 44 132 5 0 2 I 0 71 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233124 1235257 1127 - . gene_id 1 ; sequence gi|805754618|ref|XP_012138745.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1235114 1235257 . - . KQ414851.1 exonerate:protein2genome:local exon 1235114 1235257 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1235112 1235113 . - . intron_id 1 ; splice_site "gt" KQ414851.1 exonerate:protein2genome:local intron 1234771 1235113 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1234771 1234772 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1234645 1234770 . - . KQ414851.1 exonerate:protein2genome:local exon 1234645 1234770 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234643 1234644 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1234570 1234644 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1234570 1234571 . - . intron_id 1 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1234452 1234569 . - . KQ414851.1 exonerate:protein2genome:local exon 1234452 1234569 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234450 1234451 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1234326 1234451 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1234326 1234327 . - . intron_id 2 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1234061 1234325 . - . KQ414851.1 exonerate:protein2genome:local exon 1234061 1234325 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234059 1234060 . - . intron_id 4 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233973 1234060 . - . intron_id 4 KQ414851.1 exonerate:protein2genome:local splice3 1233973 1233974 . - . intron_id 3 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233856 1233972 . - . KQ414851.1 exonerate:protein2genome:local exon 1233856 1233972 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233854 1233855 . - . intron_id 5 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233761 1233855 . - . intron_id 5 KQ414851.1 exonerate:protein2genome:local splice3 1233761 1233762 . - . intron_id 4 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233670 1233760 . - . KQ414851.1 exonerate:protein2genome:local exon 1233670 1233760 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233668 1233669 . - . intron_id 6 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1233590 1233669 . - . intron_id 6 KQ414851.1 exonerate:protein2genome:local splice3 1233590 1233591 . - . intron_id 5 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233453 1233589 . - . KQ414851.1 exonerate:protein2genome:local exon 1233453 1233589 . - . insertions 0 ; deletions 2 KQ414851.1 exonerate:protein2genome:local splice5 1233451 1233452 . - . intron_id 7 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233383 1233452 . - . intron_id 7 KQ414851.1 exonerate:protein2genome:local splice3 1233383 1233384 . - . intron_id 6 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1233250 1233382 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233382 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 8 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 8 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 7 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233124 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233124 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233124 1235257 1127 - . alignment_id 1 ; Query gi|805754618|ref|XP_012138745.1| ; Align 1235258 9 144 ; Align 1234771 57 126 ; Align 1234570 99 117 ; Align 1234324 139 261 ; Align 1233972 227 114 ; Align 1233760 266 90 ; Align 1233590 296 15 ; Align 1233575 303 120 ; Align 1233382 344 132 ; Align 1233175 388 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754618|ref|XP_012138745.1| PREDICTED: uncharacterized protein LOC100875437 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 483 Query range: 134 -> 385 Target range: 1224300 -> 1222379 135 : LeuTyrArgSerThrLeuLeuGlyAlaLeuGlyIlePheLeuMetIleProLeuIl : 153 :::::: ...:!!|||! ! !!.!||| !:!!!:!:!!! .!!|||||||| IlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLeuIl 1224300 : attttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGAT : 1224246 154 : eAlaProLeuLeuAspValValLeuProLeuAsnGluThrArgProArgGlnGlnL : 172 | !|||:!!|||||||||||| !||||||||||||||||||||||||::!! | eAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLeuL 1224245 : AAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTT : 1224189 173 : euPheLysValAsnTyrValValPheAspGluArgAspTyrPhePheProValTyr : 190 ||.!! !|||!:!|||:!! !!.!.|||||| !!!::!!|||!:! !||| !! euLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValAsn 1224188 : TGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAAT : 1224135 191 : PheGlnLeuAlaIleGlyAlaPheIleIleValThrGlyIleIleThrIleAspSe : 209 |||!!.||| !! !.!!!.!.!! ! !! !! ! !||||||.!!:!:|||! PheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAspMe 1224134 : TTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATAT : 1224078 210 : rLeuTyrMetValIleIleHisTyrAsnSerGlyMetPheAlaValCys{Gl} > : 226 !||||||!!:..!|||||| !:!! !!!!|||:!!||||||||||||{||} tLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaValCys{Gl}++ 1224077 : GTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTGTGT{GG}gt. : 1224023 227 : >>> Target Intron 1 >>>> {y}TyrGlnValGlnLysAlaThrLysCys : 235 104 bp {|}:!!!:!:!!||| !.!!|||:!! ++{y}HisArgIleGlnValThrThrGluMet 1224022 : ........................ag{a}CATCGAATTCAAGTAACAACAGAGATG : 1223896 236 : TyrAspMetAsnSerAspArgThrThrValAlaGluAspAspCysGlnArgPheLy : 254 !! !:!!|||!.!|||..!|||! ! !::!|||! !! !! !:!!!:!||||| AsnIleValAsnLysAspGluThrLysLysSerGluAlaGlyTyrLysGlnPheLy 1223895 : AACATCGTGAACAAAGACGAAACCAAGAAAAGCGAGGCTGGTTACAAACAGTTCAA : 1223839 255 : sArgCysValLeuThrHisHisLysAlaLeu{Gl} >>>> Target Intron : 265 |!:!|||||| !! !||||||:!!||||||{||} 343 bp sGlnCysValThrMetHisHisGluAlaLeu{Gl}++ 1223838 : ACAATGTGTGACAATGCATCACGAAGCCCTT{CA}gt................... : 1223802 266 : 2 >>>> {n}PheTyrGluIleLeuLysGluAsnSerThrAsnSerTyrLeuLeu : 280 {|}!:!! !:!!||||||:!!..!!:!||| !:!!! !||||||:!! ++{n}TyrCysGlnIleLeuGluArgSerSerGlnHisMetTyrLeuIle 1223801 : ......ag{A}TACTGCCAGATTCTGGAAAGAAGTAGCCAACATATGTACCTGATT : 1223418 281 : GlnIleGlyPheAsnMetIleGlyIleSerValThrAlaValGln >>>> Targ : 296 |||:!!|||!!.!:!:!!.!! !|||||||||||||||!.! ! GlnValGlyLeuSerValPheIleIleSerValThrAlaAlaAla++ 1223417 : CAAGTAGGATTAAGCGTGTTCATCATCAGCGTGACGGCTGCCGCAgt......... : 1223368 297 : et Intron 3 >>>> ThrValLeuAsnLeuAspSerAspLysThrGluGluAl : 308 656 bp !:!!:!!|||:!! |||::! !!!!:||| ++CysIleMetAsnIle------AspArgProAspGluLe 1223367 : ................agTGCATTATGAACATC------GACCGACCTGACGAACT : 1222684 309 : aValArgThrAlaValPheLeuGlyAlaGluGlnPheHisLeuPheValIleSerL : 327 !:!!||| !|||:!!|||:!!! !|||::::::|||||||||...:!!:!!|||| uIleArgLeuAlaMetPheValValAlaGlnLysPheHisLeuLeuIleLeuSerL 1222683 : CATCAGGCTTGCGATGTTTGTCGTAGctcagaaatttcatttgctcATCCTTAGTT : 1222627 328 : euProGlyGlnValLeuIleAspHisCysSerGluLeuValValHis{Le} >>> : 343 |||||||||||:!!|||:!!|||||| !!! !! !|||!.!! ! {:!} euProGlyGlnMetLeuLeuAspHisSerLeuGlyLeuAlaAspIle{Il}++ 1222626 : TACCTGGGCAAATGTTGTTAGATCATAGTTTAGGATTGGCCGATATA{AT}gt... : 1222575 344 : > Target Intron 4 >>>> {u}TyrCysSerThrTrpHisGlnAlaProIl : 353 71 bp {!}|||..!|||! !|||:!!:!! !|||:! ++{e}TyrAlaSerLysTrpTyrGluLeuProVa 1222574 : ......................ag{T}TACGCTTCTAAATGGTACGAACTACCGGT : 1222478 354 : eLysIleGlnArgMetIleTyrLeuMetGlnIleArgAlaSerLysLeuCysIleL : 372 !||| |||!:!:!!|||||| !||||||!!:|||:!!! !::!! !||||||| lLysGlyGlnLysLeuIleTyrThrMetGlnMetArgSerIleArgProCysIleL 1222477 : AAAAGGGCAAAAGTTGATTTACACGATGCAAATGAGGTCCATACGGCCATGTATAT : 1222421 373 : euThrAlaGlyGlyLeuTyrGlnIleAsnMetGluAsnPhe : 385 ||||||||||||||:!!:!!:!!!!:|||!!:|||!:!||| euThrAlaGlyGlyValHisGluMetAsnIleGluSerPhe 1222420 : TAACAGCAGGAGGAGTGCATGAGATGAACATCGAGAGTTTC : 1222380 vulgar: gi|805754618|ref|XP_012138745.1| 134 385 . KQ414851.1 1224300 1222379 - 483 M 91 273 S 0 2 5 0 2 I 0 100 3 0 2 S 1 1 M 38 114 S 0 2 5 0 2 I 0 339 3 0 2 S 1 1 M 30 90 5 0 2 I 0 652 3 0 2 M 5 15 G 2 0 M 40 120 S 0 2 5 0 2 I 0 67 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222380 1224300 483 - . gene_id 2 ; sequence gi|805754618|ref|XP_012138745.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1224026 1224300 . - . KQ414851.1 exonerate:protein2genome:local exon 1224026 1224300 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1224024 1224025 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1223922 1224025 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1223922 1223923 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1223805 1223921 . - . KQ414851.1 exonerate:protein2genome:local exon 1223805 1223921 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1223803 1223804 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1223462 1223804 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1223462 1223463 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1223371 1223461 . - . KQ414851.1 exonerate:protein2genome:local exon 1223371 1223461 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1223369 1223370 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222715 1223370 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1222715 1222716 . - . intron_id 2 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222578 1222714 . - . KQ414851.1 exonerate:protein2genome:local exon 1222578 1222714 . - . insertions 0 ; deletions 2 KQ414851.1 exonerate:protein2genome:local splice5 1222576 1222577 . - . intron_id 4 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222507 1222577 . - . intron_id 4 KQ414851.1 exonerate:protein2genome:local splice3 1222507 1222508 . - . intron_id 3 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222380 1222506 . - . KQ414851.1 exonerate:protein2genome:local exon 1222380 1222506 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222380 1224300 483 - . alignment_id 2 ; Query gi|805754618|ref|XP_012138745.1| ; Align 1224301 135 273 ; Align 1223921 227 114 ; Align 1223461 266 90 ; Align 1222715 296 15 ; Align 1222700 303 120 ; Align 1222506 344 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754618|ref|XP_012138745.1| PREDICTED: uncharacterized protein LOC100875437 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 353 Query range: 98 -> 226 Target range: 1229734 -> 1229224 99 : PheArgArgLeuTyrGlnLeuMetIleGluGluTrpGluLeuLeuGluMetAsnAs : 117 ||||||::::::|||...|||:!!! ! !|||||||||! !|||..!||||||:! PheArgLysMetTyrAsnLeuValThrIleGluTrpGluGlnLeuArgMetAsnAs 1229734 : tttagaaaaatgtataatctCGTGACAATAGAGTGGGAGCAGTTGAGGATGAACGA : 1229680 118 : nGluValAspValLeuAspLysIleThrGluGlnGlySerLysIleAlaGlnLeuT : 136 !|||||| !!||||||.!.:!!:!!||| !:!!|||||||||:!:|||||||||| pGluValHisValLeuGlnGluValThrLeuLysGlySerLysLeuAlaGlnLeuT 1229679 : CGAGGTGCATGTGCTTCAAGAGGTTACTTTGAAAGGTAGTAAATTGGCCCAATTAT : 1229623 137 : yrArgSerThrLeuLeuGlyAlaLeuGlyIlePheLeuMet{I} >>>> Targe : 150 |||||||| !! !||| ! !:!!..! !! ! ! {.} yrArgSerGluTyrLeuPheMetIleSerAsp***TyrAla{P}-+ 1229622 : ACAGAAGTGAGTATCTTTTCATGATTTCCGATTAGTATGCT{T}ct.......... : 1229578 151 : t Intron 1 >>>> {le}ProLeuIleAlaProLeuLeuAspValValLeuPr : 162 126 bp {!!}||||||.!!!.!||| !||||||:!!|||||||| -+{he}ProLeuPheGlyProAlaLeuAspIleValLeuPr 1229577 : ...............gg{TC}CCATTGTTTGGTCCAGCCCTGGACATCGTCCTTCC : 1229419 163 : oLeuAsnGluThrArgProArgGlnGlnLeuPheLysValAsnTyrValValPheA : 181 |! !||||||||||||||||||||||||||||||!:!|||||||||:!!:!!|||| oSerAsnGluThrArgProArgGlnGlnLeuPheArgValAsnTyrIleIlePheA 1229418 : ATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAATTTTCG : 1229362 182 : spGluArgAspTyrPhePheProValTyrPheGlnLeuAlaIleGlyAlaPheIle : 199 ||:!! !|||||||||||| !||||||.!!|||||| ! !!.!!.!!:!! spGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPheTrpCysThrIleVal 1229361 : ACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACAATCGTT : 1229308 200 : IleValThrGlyIleIleThrIleAspSerLeuTyrMetValIleIleHisTyrAs : 218 :!!|||! !!.!|||||||||:!!|||||||||||||||:!!||||||:!!:!! LeuValMetAlaIleIleThrValAspSerLeuTyrMetIleIleIleTyrHisAl 1229307 : CTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGATCATAATTTACCATGC : 1229251 219 : nSerGlyMetPheAlaValCysGly : 226 !|||||||||||||||:!!|||||| aSerGlyMetPheAlaIleCysGly 1229250 : CAGCGGAATGTTCGCTATATGCGGG : 1229225 vulgar: gi|805754618|ref|XP_012138745.1| 98 226 . KQ414851.1 1229734 1229224 - 353 M 51 153 S 0 1 5 0 2 I 0 122 3 0 2 S 1 2 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229734 353 - . gene_id 3 ; sequence gi|805754618|ref|XP_012138745.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1229581 1229734 . - . KQ414851.1 exonerate:protein2genome:local exon 1229581 1229734 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1229579 1229580 . - . intron_id 1 ; splice_site "CT" KQ414851.1 exonerate:protein2genome:local intron 1229455 1229580 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1229455 1229456 . - . intron_id 0 ; splice_site "GG" KQ414851.1 exonerate:protein2genome:local cds 1229225 1229454 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229454 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229734 353 - . alignment_id 3 ; Query gi|805754618|ref|XP_012138745.1| ; Align 1229735 99 153 ; Align 1229453 151 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754618|ref|XP_012138745.1| PREDICTED: uncharacterized protein LOC100875437 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 303 Query range: 266 -> 404 Target range: 1243170 -> 1242521 267 : TyrGluIleLeuLysGluAsnSerThrAsnSerTyrLeuLeuGlnIleGlyPheAs : 285 !:!!!:! !:!!!!.|||! !!!!!:!!..!!!||||||!!!|||:!!|||.!!|| PheAspThrIleAsnGluIleThrSerThrCysTyrLeuPheGlnValGlyLeuAs 1243170 : TTCGATACCATAAACGAAATCACTAGCACATGTTACTTGTTTCAAGTCGGACTTAA : 1243116 286 : nMetIleGlyIleSerValThrAlaValGln >>>> Target Intron 1 >> : 296 ||||||||||||||||||||||:!!|||! ! 77 bp nMetIleGlyIleSerValThrSerValLeu++ 1243115 : TATGATCGGTATTAGCGTGACGTCTGTTCTAgt....................... : 1243081 297 : >> ThrValLeuAsnLeuAspSerAspLysThrGluGluAlaValArgThrAlaV : 313 .!! !!:!!|||||| |||::! !!|||||| !!.!|||! !||| ++AlaPheIleAsnLeu------AspArgProGluGluPheAlaArgIleAlaC 1243080 : ..agGCCTTTATAAATCTA------GATCGGCCTGAAGAATTTGCCAGAATTGCTT : 1242961 314 : alPheLeuGlyAlaGluGlnPheHisLeuPheValIleSerLeuProGlyGlnVal : 331 !|||||| !|||:!!|||.!!||||||!!.|||||||||:!!|||||||||:!! ysPheLeuIleAlaGlnGlnLeuHisLeuLeuValIleSerValProGlyGlnIle 1242960 : GTTTCCTTATAGCTCAGCAACTCCACTTGTTAGTCATTAGTGTACCAGGGCAGATC : 1242907 332 : LeuIleAspHisCysSerGluLeuValValHis{Le} >>>> Target Intro : 343 :!!! |||!!. !!|||:!!|||..!:!! !!{:!} 72 bp IleThrAspGlnSerSerLysLeuThrIleAsp{Il}++ 1242906 : ATCACGGATCAAAGTTCAAAGTTGACCATTGAC{AT}gt................. : 1242867 344 : n 2 >>>> {u}TyrCysSerThrTrpHisGlnAlaProIleLysIleGlnArgM : 358 {!}||| !|||! !|||:!!|||.!!|||:!: !||||||!:!! ++{e}TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysI 1242866 : ........ag{A}TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAA : 1242754 359 : etIleTyrLeuMetGlnIleArgAlaSerLysLeuCysIleLeuThrAlaGlyGly : 376 !::!!:!!:!!:!:|||||||||:!!.!!|||! !|||! !|||..!||||||||| leLeuHisIleValGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGly 1242753 : TACTTCATATAGTACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGA : 1242700 377 : LeuTyrGlnIleAsnMetGluAsnPheAlaSer >>>> Target Intron 3 : 388 ||||||:!!!!:|||!!:|||||||||!.!||| 92 bp LeuTyrGluMetAsnIleGluAsnPheGlySer++ 1242699 : TTATACGAAATGAACATTGAGAATTTTGGATCAgt..................... : 1242662 389 : >>>> AlaPheArgMetCysMetSerTyrIleThrMetLeuLeuSerValArgGl : 404 ..!|||!:!! |||!!:||||||.!!||||||||||||||| !!!:!!! ++ThrPheLysThrCysIleSerTyrPheThrMetLeuLeuSerPheLysAs 1242661 : ....agacTTTCAAAACCTGCATATCGTACTTTACGATGCTCTTATCATTCAAAGA : 1242524 405 : u : 404 : p 1242523 : C : 1242522 vulgar: gi|805754618|ref|XP_012138745.1| 266 404 . KQ414851.1 1243170 1242521 - 303 M 29 87 5 0 2 I 0 73 3 0 2 M 5 15 G 2 0 M 40 120 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 44 132 5 0 2 I 0 88 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242522 1243170 303 - . gene_id 4 ; sequence gi|805754618|ref|XP_012138745.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1243084 1243170 . - . KQ414851.1 exonerate:protein2genome:local exon 1243084 1243170 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1243082 1243083 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243007 1243083 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1243007 1243008 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242870 1243006 . - . KQ414851.1 exonerate:protein2genome:local exon 1242870 1243006 . - . insertions 0 ; deletions 2 KQ414851.1 exonerate:protein2genome:local splice5 1242868 1242869 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242798 1242869 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1242798 1242799 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1242665 1242797 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242797 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 3 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 3 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 2 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242522 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242522 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242522 1243170 303 - . alignment_id 4 ; Query gi|805754618|ref|XP_012138745.1| ; Align 1243171 267 87 ; Align 1243007 296 15 ; Align 1242992 303 120 ; Align 1242797 344 132 ; Align 1242573 388 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754618|ref|XP_012138745.1| PREDICTED: uncharacterized protein LOC100875437 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 283 Query range: 98 -> 226 Target range: 1240295 -> 1239821 99 : PheArgArgLeuTyrGlnLeuMetIleGluGluTrpGluLeuLeuGluMetAsnAs : 117 |||:::...||| ! !:!!:!:|||:!!|||||| !|||..!!!:!:!|| PheLysAsnLeuCysIleSerValValGluLysTrpGluGluLeuArgIleSerAs 1240295 : tttaaaaatttatgcattTCTGTGGTGGAAAAATGGGAAGAGTTGAGGATCAGTAA : 1240241 118 : nGluValAspValLeuAspLysIleThrGluGlnGlySerLysIleAlaGlnLeuT : 136 ||||:!!..!||||||!!::!!:!!|||! ||||||||||||......||||||| nGluLeuSerValLeuGluGluValThrAlaGlnGlySerLysPheValGlnLeuT 1240240 : CGAGTTAAGCGTGCTGGAAGAAGTTACCGCCCAAGGGAGcaaatttgtacaattgt : 1240184 137 : yrArg{S} >>>> Target Intron 1 >>>> {er}ThrLeuLeuGlyAla : 143 |||||{!} 90 bp { !}..!|||!!!...... yrArg{I}+- ++{le}ValLeuPheSerVal 1240183 : aCAGA{A}gc.........................ag{TC}GTTTTATTTTCcgtt : 1240073 144 : LeuGlyIlePheLeuMetIleProLeuIleAlaProLeuLeuAspValValLeuPr : 162 ||| |||||||||:!!:!!|||:::... ||||||||||||:!!:!! !|| LeuPheIlePheLeuValValProIlePheProProLeuLeuAspIleLeuLysPr 1240072 : ttgttcatttttctggTGGTTCcgatttttcctcctcttctggACATTTTAAAACC : 1240016 163 : oLeuAsnGluThrArgProArgGlnGlnLeuPheLysValAsnTyrValValPheA : 181 |||||||||||||||| !!||||||::::::|||||||||||||||:!!:!!.!!| oLeuAsnGluThrArgAlaArgGlnLysIlePheLysValAsnTyrLeuIleIleA 1240015 : TTTAAACGAAACCCGAGCACgccagaaaatattcaaagttaaTTACCTGATCATTG : 1239959 182 : spGluArgAspTyrPhePheProValTyrPheGlnLeuAlaIleGlyAlaPheIle : 199 ||..! !!!: ! !.!. !..!||||||!!.|||:!! !.!!.!!! ! spArgAspGluGlnAlaLeuIleThrTyrPheHisLeuSerTrpThrThrIleThr 1239958 : ACAGGGATGAACAAGCTCTGATCACATATTTTCACTTGTCTTGGACAACTATCACT : 1239905 200 : IleValThrGlyIleIleThrIleAspSerLeuTyrMetValIleIleHisTyrAs : 218 :!!! !! !..!:!::!!!:! !!!:! !:!!|||:!::!!:!!||||||:!!!. LeuGlyIleSerValLeuSerSerGluLeuIleTyrValLeuLeuIleHisHisTh 1239904 : CTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGTCCTTCTTATTCATCATAC : 1239848 219 : nSerGlyMetPheAlaValCysGly : 226 !||||||:!!|||||||||..!||| rSerGlyLeuPheAlaValAlaGly 1239847 : CAGCGGTCTGTTTGCTGTGGCTGgg : 1239822 vulgar: gi|805754618|ref|XP_012138745.1| 98 226 . KQ414851.1 1240295 1239821 - 283 M 39 117 S 0 1 5 0 2 I 0 86 3 0 2 S 1 2 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240295 283 - . gene_id 5 ; sequence gi|805754618|ref|XP_012138745.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1240178 1240295 . - . KQ414851.1 exonerate:protein2genome:local exon 1240178 1240295 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1240176 1240177 . - . intron_id 1 ; splice_site "GC" KQ414851.1 exonerate:protein2genome:local intron 1240088 1240177 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1240088 1240089 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1239822 1240087 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240087 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240295 283 - . alignment_id 5 ; Query gi|805754618|ref|XP_012138745.1| ; Align 1240296 99 117 ; Align 1240086 139 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754618|ref|XP_012138745.1| PREDICTED: uncharacterized protein LOC100875437 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 224 Query range: 250 -> 339 Target range: 1239592 -> 1238696 251 : GlnArgPheLysArgCysValLeuThrHisHisLysAlaLeu{Gl} >>>> Tar : 265 ::::::||||||||||||||| !||||||:!!:!!|||:!!{:!} GluLysPheLysArgCysValAspThrHisAsnGluAlaIle{Gl}++ 1239592 : gaaaaattcaaacgatgCGTCGACACACACAACGAAGCTATT{GA}gt........ : 1239546 266 : get Intron 1 >>>> {n}PheTyrGluIleLeuLysGluAsnSerThrAsnS : 277 88 bp {!}! !|||.!.:!!|||:!!:!!!:!|||..! !| ++{u}CysTyrAsnValLeuGlnLysSerSerValLeuS 1239545 : .................ag{G}TGTTACAATGTTCTGCAGAAAAGCAGTGTGCTCA : 1239426 278 : erTyrLeuLeuGlnIleGlyPheAsnMetIleGlyIleSerValThrAlaValGln : 295 ||||||||!!!|||:!!|||!!.|||!!::!:|||:!!||||||:!!||||||||| erTyrLeuPheGlnValGlyLeuAsnIleValGlyLeuSerValSerAlaValGln 1239425 : GTTACTTGTTTCAAGTTGGATTAAACATAGTGGGCCTTAGTGTGTCAGCTGTTCAA : 1239372 296 : >>>> Target Intron 2 >>>> ThrValLeuAsnLeuAspSerAspLys : 304 547 bp |||||| !|||:!!||| ||| ! ++ ++ThrValGlyAsnIleAsp---AspPro 1239371 : gt.........................agACAGTGGGGAATATAGAC---GATCCG : 1238801 305 : ThrGluGluAlaValArgThrAlaValPheLeuGlyAlaGluGlnPheHisLeuPh : 323 ||| ! !|||:!!|||!.!|||..! !!! !||||||:!!|||.!!|||||||| Thr---ValAlaLeuArgAsnAlaThrValTrpGlyAlaLysGlnIleHisLeuPh 1238800 : ACA---GTAGCTTTGAGAAACGCTACGGTCTGGGGGGCTAAGCAAATTCACCTGTT : 1238747 324 : eValIleSerLeuProGlyGlnValLeuIleAspHisCysSerGluLeu : 339 |:!!||||||:!!||||||||||||||||||||||||||| !|||||| eIleIleSerIleProGlyGlnValLeuIleAspHisCysValGluLeu 1238746 : CATCATCAGTATACCTGGACAGGTGCTTATAGATCATTGTGTGGAGCTG : 1238697 vulgar: gi|805754618|ref|XP_012138745.1| 250 339 . KQ414851.1 1239592 1238696 - 224 M 14 42 S 0 2 5 0 2 I 0 84 3 0 2 S 1 1 M 30 90 5 0 2 I 0 543 3 0 2 M 6 18 G 1 0 M 3 9 G 1 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1238697 1239592 224 - . gene_id 6 ; sequence gi|805754618|ref|XP_012138745.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1239549 1239592 . - . KQ414851.1 exonerate:protein2genome:local exon 1239549 1239592 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1239547 1239548 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1239461 1239548 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1239461 1239462 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1239370 1239460 . - . KQ414851.1 exonerate:protein2genome:local exon 1239370 1239460 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1239368 1239369 . - . intron_id 2 ; splice_site "gt" KQ414851.1 exonerate:protein2genome:local intron 1238823 1239369 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1238823 1238824 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1238697 1238822 . - . KQ414851.1 exonerate:protein2genome:local exon 1238697 1238822 . - . insertions 0 ; deletions 2 KQ414851.1 exonerate:protein2genome:local similarity 1238697 1239592 224 - . alignment_id 6 ; Query gi|805754618|ref|XP_012138745.1| ; Align 1239593 251 42 ; Align 1239460 266 90 ; Align 1238823 296 18 ; Align 1238805 303 9 ; Align 1238796 307 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754618|ref|XP_012138745.1| PREDICTED: uncharacterized protein LOC100875437 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 196 Query range: 145 -> 226 Target range: 1243839 -> 1243599 146 : IlePheLeuMetIleProLeuIleAlaProLeuLeuAspValValLeuProLeuAs : 164 ||||||:!!:!:.!!||||||||| !!|||:!!||||||||||||! !|||||||| IlePheValLeuPheProLeuIleProProIleLeuAspValValSerProLeuAs 1243839 : ATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAA : 1243785 165 : nGluThrArgProArgGlnGlnLeuPheLysValAsnTyrValValPheAspGluA : 183 |||||||||| !!||| !::::::...|||:::...||| :!!|||||| . nGluThrArgSerArgIleGluValIleLysLeuGlnTyr---LeuPheAspMetG 1243784 : TGAGACTCGATCTCGGATAGaagtaataaaattgcaatac---cTGTTCGACAtgg : 1243731 184 : rgAspTyrPhePheProValTyrPheGlnLeuAlaIleGlyAlaPheIleIleVal : 201 .. |||::: :::||| !! ! !!.! !!:!!|||!!:! !:!! luLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMet 1243730 : agaagaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATG : 1243677 202 : ThrGlyIleIleThrIleAspSerLeuTyrMetValIleIleHisTyrAsnSerGl : 220 ! !! !|||||||||||||||:!!||||||:!!||||||||||||:!!!..!!!|| MetValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGl 1243676 : ATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGG : 1243620 221 : yMetPheAlaValCysGly : 226 |:!:||||||||||||||| yLeuPheAlaValCysGly 1243619 : CTTATTCGCTGTTTGCGGG : 1243600 vulgar: gi|805754618|ref|XP_012138745.1| 145 226 . KQ414851.1 1243839 1243599 - 196 M 32 96 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243839 196 - . gene_id 7 ; sequence gi|805754618|ref|XP_012138745.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243839 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243839 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243839 196 - . alignment_id 7 ; Query gi|805754618|ref|XP_012138745.1| ; Align 1243840 146 96 ; Align 1243744 179 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754618|ref|XP_012138745.1| PREDICTED: uncharacterized protein LOC100875437 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 168 Query range: 339 -> 387 Target range: 1228557 -> 1228413 340 : ValValHisLeuTyrCysSerThrTrpHisGlnAlaProIleLysIleGlnArgMe : 358 :!!:!!:!! !|||! !|||||||||:!!:!!!.! !! !|||.!!||||||:! IleLeuTyrArgTyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgVa 1228557 : ATTCTTTACAGATACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGT : 1228503 359 : tIleTyrLeuMetGlnIleArgAlaSerLysLeuCysIleLeuThrAlaGlyGlyL : 377 :||||||:!!||||||||||||||| !|||! !|||||||||||||||||||||| lIleTyrMetMetGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyL 1228502 : AATTTACATGATGCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGAT : 1228446 378 : euTyrGlnIleAsnMetGluAsnPheAlaSer : 387 |||||:!!!!:||||||||||||||||||!:! euTyrGluMetAsnMetGluAsnPheAlaAsn 1228445 : TGTACGAAATGAACATGGAGAACTTTGCAAAC : 1228414 vulgar: gi|805754618|ref|XP_012138745.1| 339 387 . KQ414851.1 1228557 1228413 - 168 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228414 1228557 168 - . gene_id 8 ; sequence gi|805754618|ref|XP_012138745.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228414 1228557 . - . KQ414851.1 exonerate:protein2genome:local exon 1228414 1228557 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228414 1228557 168 - . alignment_id 8 ; Query gi|805754618|ref|XP_012138745.1| ; Align 1228558 340 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754618|ref|XP_012138745.1| PREDICTED: uncharacterized protein LOC100875437 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 297 -> 344 Target range: 1228755 -> 1228614 298 : LeuAsnLeuAspSerAspLysThrGluGluAlaValArgThrAlaValPheLeuGl : 316 :!!! |||! ! !|||!:! !!...||||||:!!||| !:!!||| !!||||| IleMetLeuAlaLeuAspArgProSerGluAlaIleArgTyrSerValValLeuGl 1228755 : ATAATGCTCGCCCTGGATAGACCGAGCGAAGCTATTAGATATTCTGTGGTTCTTGG : 1228701 317 : yAlaGluGlnPheHisLeuPheValIleSerLeuProGlyGlnValLeuIleAspH : 335 |!.!! !|||||||||||||||:!!||||||||||||||||||..!|||:!:|||| yGlyAlaGlnPheHisLeuPheIleIleSerLeuProGlyGlnThrLeuValAspH 1228700 : AGGTGCGCAATTTCATTTGTTCATCATTAGCTTACCTGGACAGACACTCGTGGATC : 1228644 336 : isCysSerGluLeuValValHisLeuTyr : 344 |||||!!! !|||..! ! !!:!!||| isCysThrMetLeuThrAsnAspMetTyr 1228643 : ATTGTACCATGCTAACGAACGATATGTAC : 1228615 vulgar: gi|805754618|ref|XP_012138745.1| 297 344 . KQ414851.1 1228755 1228614 - 135 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228615 1228755 135 - . gene_id 9 ; sequence gi|805754618|ref|XP_012138745.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228615 1228755 . - . KQ414851.1 exonerate:protein2genome:local exon 1228615 1228755 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228615 1228755 135 - . alignment_id 9 ; Query gi|805754618|ref|XP_012138745.1| ; Align 1228756 298 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754618|ref|XP_012138745.1| PREDICTED: uncharacterized protein LOC100875437 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 53 -> 103 Target range: 1229944 -> 1229794 54 : ValProThrSerIleGluValTyrValSerLeuLeuGluLysAspMetAspAlaVa : 72 |||! ! !! !||||||:!!||||||..!|||! !:!!|||:!!||||||! !:! ValGlnGlnLeuIleGluMetTyrValGlnLeuArgLysLysAsnMetAspAspMe 1229944 : GTTCAACAGTTGATCGAGATGTATGTGCAATTGCGTAAGAAGAATATGGACGATAT : 1229890 73 : lIleGluCysMetProHisLeuIleAlaAlaIleThrThrIleValLysIleLeuA : 91 !!!:||| !!.!. !!:!! !||||||||| |||!:!:!:||||||:!:|||| tMetGluSerPheAlaAsnThrIleAlaAlaAlaThrSerLeuValLysLeuLeuA 1229889 : GATGGAGAGTTTTGCGAATACTATTGCTGCCGCGACCAGCCTGGTGAAATTGTTGA : 1229833 92 : snGlyHisLeuAsnLysGluAsnPheArgArgLeuTyr : 103 ||! !:!!||||||!:!|||||| ! ||| !!!!!:! snValTyrLeuAsnArgGluAsnValArgAlaPhePhe 1229832 : ACGTTTACTTAAACAGGGAAAATGTACGTGCCTTCTTT : 1229795 vulgar: gi|805754618|ref|XP_012138745.1| 53 103 . KQ414851.1 1229944 1229794 - 112 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229795 1229944 112 - . gene_id 10 ; sequence gi|805754618|ref|XP_012138745.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229795 1229944 . - . KQ414851.1 exonerate:protein2genome:local exon 1229795 1229944 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229795 1229944 112 - . alignment_id 10 ; Query gi|805754618|ref|XP_012138745.1| ; Align 1229945 54 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754618|ref|XP_012138745.1| PREDICTED: uncharacterized protein LOC100875437 [Megachile rotundata] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 264 -> 295 Target range: 1228927 -> 1228834 265 : GlnPheTyrGluIleLeuLysGluAsnSerThrAsnSerTyrLeuLeuGlnIleGl : 283 ::!||||||!!:||||||!!.|||!:!||| !||||||||||||||||||:!!|| ArgPheTyrAspIleLeuAsnGluSerSerArgAsnSerTyrLeuLeuGlnValGl 1228927 : AGGTTTTACGATATTCTAAACGAGAGCAGTCGAAACAGCTACTTGCTTCAGGTTGG : 1228873 284 : yPheAsnMetIleGlyIleSerValThrAlaValGln : 295 |!!.!:!|||!!:.!!||||||||||||||||||||| yLeuSerMetMetSerIleSerValThrAlaValGln 1228872 : ATTGAGCATGATGAGCATCAGCGTGACTGCTGTGCAG : 1228835 vulgar: gi|805754618|ref|XP_012138745.1| 264 295 . KQ414851.1 1228927 1228834 - 109 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228835 1228927 109 - . gene_id 11 ; sequence gi|805754618|ref|XP_012138745.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228835 1228927 . - . KQ414851.1 exonerate:protein2genome:local exon 1228835 1228927 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228835 1228927 109 - . alignment_id 11 ; Query gi|805754618|ref|XP_012138745.1| ; Align 1228928 265 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_02845 [mRNA] [translate_table: standard] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 412 Query range: 5 -> 234 Target range: 5279 -> 4042 6 : ThrProLysLysAlaIleThrPheThrLysTyrSerValIleLeuCysCysGlyTrpProLe : 26 !:!|||:!!!:!||||||:!!.!!..! ! !! !..! !!!! !||| !!|||||||| SerProGluArgAlaIleSerLeuValHisValIleThrAlaPheThrCysCysTrpProLe 5279 : AGTCCAGAAAGAGCCATCTCCCTTGTCCACGTTATCACGGCTTTTACCTGCTGTTGGCCTCT : 5219 27 : uProSerSerAlaProLysSerHisPheTyrPheTyrValIleAlaLysValLeuIleAlaL : 47 |||||||!!!||| !!||||||! ! ! !:! !||| !!:! !!!!:!: !| uProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuArgSerPheLeuLeuL 5218 : TCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGAGATCTTTCCTGCTTT : 5156 48 : euSerAsnIleSerValIleLeuProAlaPheTrpSerLeuLeuPheTyrIleHisAspPro : 67 ||!:! :!! !:!!.!!|||||| !!!.!:::!!|||! ! ! :!! !:!!||| !! euAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHisValHisArgAsnAspAla 5155 : TAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTGCATCGAAACGACGCC : 5096 68 : ValArgThrGlyLysThrPheGlyLeuLeuThrAlaMetCysGlnThrIleAlaTyrIleIl : 88 ! !!.!..!!.!|||.!! ! !!||| ! !|||::: ||| ... !.! GluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPh 5095 : GAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCctcgtgcaaatatttttccagacTTT : 5033 89 : eValCysSerPheGlnHisAspHisTyrGln >>>> Target Intron 1 >>>> Ar : 99 !||||||! ! !|||:!!||||||!:!||| 550 bp !: eValCysIleGlyGlnTyrAspHisPheGln++ ++Ly 5032 : CGTTTGCATCGGCCAATACGATCATTTTCAGgt.........................agAA : 4450 100 : gLeuIleGluGluMetThrAspTyrLeuGluLysAlaLysLeuTyrGluMetValIlePheG : 120 !|||||||||||||||! ! !! !! !|||! !||||||! !||||||! ! !:!!|||| sLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheG 4449 : ACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGACGTCTTCC : 4387 121 : lnArgTyrLeuAspThrTyrSerThrPheLeuGlyIleThrThrIleSerPheTyrIleAla : 140 ||||||||:!!:!!! !:!:||| ||| !:!! !!!!||||||:!!.!! lnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheTyrLeuThr 4386 : AACGATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTTACTTAACA : 4327 141 : AlaGlyValIleValValThrThrLeuPheThrAspGlnProPheProValMetAlaLysTy : 161 ||| !:!!!!:|||:!! !!:!|||.!!! !..!.!.|||||||||..!! ||| !|| AlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPheProThrAsnAlaValTy 4326 : GCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACCAACGCAGTATA : 4264 162 : rProPheArgValAspTyrGluProValArgSerThrIlePheLeuAsnAspAlaPheValA : 182 |||||||! !|||:!!!:!||||||:!!||||||! !||||||:!!:!!.!.:!!||||||! rProPheProValAsnPheGluProLeuArgSerIleIlePheMetHisGlnSerPheValG 4263 : TCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCACCAATCGTTCGTTG : 4201 183 : laLeuGlnAsnValAlaSerValSerLeuAsnThrLeuThrAlaLeuLeuIleLeuPheAla : 202 .!:!!||| !!.!||| !!.!|||:!!|||..!|||:!!|||||||||:!:||||||.!! lyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeuLeuLeuLeuPheThr 4200 : GCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTGTTATTGCTATTCACT : 4141 203 : AlaAlaArgTyrAspIleValMetLeuGluLeuGlnSerAlaValThrValAlaAspLeuLy : 223 .!!||||||::::::|||:::||| !||||||::!!:!!.! ! !:!!! ! |||! ThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAspIleGluThrLeuIl 4140 : ACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGATATCGAAACACTGAT : 4078 224 : sGluSerMetLysLysTyrHisGluValLysArg : 234 :!!||||||||||||||| |||::!||| eLysSerMetLysLysTyrSerThrValArgArg 4077 : TAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: Lalb_02845 5 234 . LHQN01020543.1 5279 4042 - 412 M 93 279 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 5279 412 - . gene_id 1 ; sequence Lalb_02845 ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 5001 5279 . - . LHQN01020543.1 exonerate:protein2genome:local exon 5001 5279 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 4999 5000 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 4451 5000 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 4451 4452 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 4043 4450 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4450 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 5279 412 - . alignment_id 1 ; Query Lalb_02845 ; Align 5280 6 279 ; Align 4451 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_02845 [mRNA] [translate_table: standard] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 239 Query range: 249 -> 354 Target range: 2022 -> 1552 250 : ThrLeuValSerSerSerValIleLeuValAsnAlaGlyLeuAsnLeuIleGly >>>> T : 268 |||:!!:!!!!!!!!!!!||| ! !||| !||||||:!!|||||||||||| ThrValIleThrCysThrValAlaCysValPheAlaGlyIleAsnLeuIleGly++ 2022 : ACGGTAATCACATGCACTGTGGCGTGTGTATTTGCTGGAATTAATTTGATCGGAgt...... : 1966 269 : arget Intron 1 >>>> ArgArgAspPheLeuIleLysCysGlnTyrValPheValAl : 281 73 bp !:!!:! ||| !:!:|||..!|||!:!:!! !|||:: ++LysGlnProPheAlaValLysAlaGlnPheLeuThrValSe 1965 : ...................agAAACAACCGTTCGCTGTGAAAGCTCAGTTTCTTACTGTGAG : 1856 282 : aThrThrAlaLeuLeuGluValPheSerCysValLeuProAlaAspArgLeuIleGluVal : 302 ! !||||||||||||||||||.!!! !||| !||||||||||||!.!||||||!!::!! rGlyThrAlaLeuLeuGluValLeuMetCysSerLeuProAlaAspHisLeuIleAspMet+ 1855 : TGGAACCGCTTTGCTGGAAGTGCTTATGTGTTCACTACCAGCTGACCATTTGATAGATATGg : 1793 303 : >>>> Target Intron 2 >>>> SerThrGlyThrMetArgSerValTyrAspValL : 313 82 bp ||| !..!! !|||!:!.!!:!!|||!!: !| + ++SerGluAsnIleMetGlnGlyIleTyrGluSerL 1792 : t.........................agAGCGAGAACATAATGCAAGGAATATATGAATCAA : 1678 314 : ysTrpTyrGluArgAspLeuSerValGlnArgThrValTyrHisMetLeuValProGlnLys : 333 ||||||||||||||...|||...:::|||:::::!..! !! !||||||..!||||||... ysTrpTyrGluArgSerLeuLysIleGlnLysSerThrValLeuMetLeuThrProGlnSer 1677 : AATGGTACGAACGAtctctaaaaattcaaaagtcTACAGTCCTCATGTTGACTCCTCAATCT : 1618 334 : ProValIleIleSerPheLeuPheValValProGlnLeuSerLeuAsnTyrTyrCysSerVa : 354 ||||||! !:!!!.!.!! !! !:!!:!!||| ||||||||||||:::||||||||||| ProValThrValLysIleLysCysLeuIleProValLeuSerLeuAsnPheTyrCysSerVa 1617 : CCGGTGACAGTAAAAATCAAGTGCCTCATTCCAGttctttctttgaatttttactgCTCGGT : 1555 355 : l : 354 | l 1554 : A : 1553 vulgar: Lalb_02845 249 354 . LHQN01020543.1 2022 1552 - 239 M 18 54 5 0 2 I 0 69 3 0 2 M 34 102 5 0 2 I 0 78 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 1553 2022 239 - . gene_id 2 ; sequence Lalb_02845 ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 1969 2022 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1969 2022 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 1967 1968 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 1896 1968 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 1896 1897 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 1794 1895 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1794 1895 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 1792 1793 . - . intron_id 2 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 1712 1793 . - . intron_id 2 LHQN01020543.1 exonerate:protein2genome:local splice3 1712 1713 . - . intron_id 1 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 1553 1711 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1553 1711 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 1553 2022 239 - . alignment_id 2 ; Query Lalb_02845 ; Align 2023 250 54 ; Align 1896 268 102 ; Align 1712 302 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 871 Query range: 4 -> 308 Target range: 299620 -> 300719 5 : MetArgAspArgSerAlaAspArgAlaAspGlyHisPheThrAsnProSerTyrLysS : 24 ||| !|||||||||..!..!!!!!.!||||||!!.!!.! !||| ! !|||:!!! MetTyrAspArgSerCysSerSerValAspGlyGlnLeuArgAsnTyrHisTyrGlnA 299621 : ATGTACGATCGATCCTGTAGCAGTGTTGACGGCCAATTGAGGAATTACCATTACCAAA : 299678 25 : erAspValLysTyrThrLeuGluMetCysArgTrpValThrLysProIleGlyValTr : 43 :!|||:!! ! |||||||||:!!||||||!:!|||:!! !||||||||||||||||| snAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTr 299679 : ATGACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATG : 299735 44 : pProPheValTyrSerArgThrSerLysValGluLysLeuValAlaIleValLeuLeu : 62 |! !!!.:!! !!..!|||:!!||||||:!!||| ! ||||||:!!|||||||||:!! pArgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMet 299736 : GCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATG : 299792 63 : ThrValCysPheSerAspLeuLeuPheAlaThrIleProProGlyHisTyrLeuIleP : 82 |||:!!|||||||||..!|||!!!||| !..!:!:||| !!|||||||||:!!.!!| ThrIleCysPheSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePheP 299793 : ACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCT : 299852 83 : heValGluLysAsnValTyrValIleValLysPheLeuGlyProLeuGlyPheCysIl : 101 ||!.!||||||!:!:!!:!!|||! |||||| ! !!!||||||:!!|||||||||:! heAlaGluLysSerIleHisValLysValLysValPheGlyProValGlyPheCysLe 299853 : TCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCT : 299909 102 : eSerSerAlaIleLysTyrLeuTyrLeuValPheLysGlyAsnLeuPheLysArgCys : 120 !|||||| !:!!||||||! !|||||| !.!.!!.|||..! !|||:!!|||||| uSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCys 299910 : CTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGC : 299966 121 : LeuValHisValGluArgAspTrpLysThrValValAspGlnArg--TyrArgArgIl : 139 :!! !||||||||||||||| ... |||##:!!|||! !|| IleGlnHisValGluArgAsp---UnkUnkUnkUnkUnkUnkArg##HisArgThrIl 299967 : ATCCAACACGTCGAGAGAGAC---NNNNNNNNNNNNNNNNTTCGAATCATCGTACGAT : 300022 140 : eMetValArgGlnSerSerValSerArgGlnLeuIleValLeuCysAlaIlePheLeu : 158 ||||:!!||| ! !!!!:!!||||||.!.|||! ..!:!!||||||:!:|||||| eMetLeuArgTyrValThrMetSerArgAsnLeuThrThrValCysAlaValPheLeu 300023 : CATGTTGAGATACGTGACTATGAGCAGAAATCTGACGACCGTGTGCGCCGTGTTTCTT : 300079 159 : TyrSerGlyGlyMetSerTyrHisThrIleMetProPheValSerLysProLysMet{ : 178 |||:!!|||||||||||||||||||||:!:|||! !|||:!!|||||| !!:!! { TyrAlaGlyGlyMetSerTyrHisThrValMetGlnPheLeuSerLysAspArgSer{ 300080 : TACGCAGGTGGTATGTCGTATCACACGGTGATGCAGTTCTTATCGAAGGACAGAAGC{ : 300139 179 : A} >>>> Target Intron 1 >>>> {rg}GlyAsnGlnThrLeuArgProLe : 186 |} 45 bp {||}! !||| ! |||! !!:!||||| A}+- +-{rg}GluAsnTyrThrTyrLysProLe 300140 : A}gc.........................aa{GG}GAGAATTACACTTACAAACCGTT : 300208 187 : uIleTyrProGlyTyrAspAlaPhePheAspSerGlnAlaSerProThrTyrGluIle : 205 | !||||||||||||||| !|||.!!|||!!!|||.!!|||||||||||||||||| uAlaTyrProGlyTyrAspTrpPheIleAspThrGlnThrSerProThrTyrGluIle 300209 : AGCCTATCCTGGCTACGATTGGTTTATCGATACACAAACCAGTCCTACCTACGAgatc : 300265 206 : IlePheSerMetHisCysLeuSerGlyPheIleLysTyrSerIleThrThrGlyAlaT : 225 :::||| ...||||||.!!:!!!.!.!.|||! !|||!:!:!:||||||!.!|||| ValPhePhePheHisCysPheAlaAlaMetIleMetTyrAsnValThrThrAlaAlaT 300266 : gtatttttctttcactgttTCGCAGCGATGATCATGTACAACGTGACAACGGCAGCGT : 300325 226 : yrSerLeuAlaAlaThrPheValThrHisIleCysGlyGlnValGlnIleGlnIleAl : 244 ||||||||||||||! !||||||||||||||||||||||||:!!|||||||||!!:|| yrSerLeuAlaAlaIlePheValThrHisIleCysGlyGlnIleGlnIleGlnMetAl 300326 : ACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGACAGATTCAGATACAGATGGC : 300382 245 : aArgLeuGluAsnLeuValGluSerIle<->GlnLysAsnSerAspArgAsnProVal : 262 ||||||||||:!!|||||||||!!!! :!!|||:!!..!! !! !:!!|||:!! aArgLeuGluAspLeuValGluArgThrGlyGluLysAspAspGlyProAspProLeu 300383 : GAGATTGGAGGATCTGGTGGAGAGGACGGGAGAGAAGGACGACGGTCCTGATCCTTTG : 300439 263 : AlaValIleValArgGluHisValGluIleLeu{Ar} >>>> Target Intron : 274 !.!||||||||||||!!:||||||:!!:!!|||{||} 140 bp ValValIleValArgAspHisValLysValLeu{Ar}++ 300440 : GTCGTTATCGTTCGAGATCACGTGAAGGTTTTA{AG}gt................... : 300479 275 : 2 >>>> {g}PheSerLysAsnValGluGluAlaLeuArgGluIleCysLeuThrGl : 290 {|}|||:!!|||||||||||||||.!!||||||!!:.!!||||||..!|| ++{g}PheAlaLysAsnValGluGluThrLeuArgAspPheCysLeuValGl 300480 : ......ag{A}TTTGCAAAGAACGTTGAGGAAACTTTGCGTGACTTCTGCTTAGTGGA : 300663 291 : uIleValGluSerThrPheIleLeuCysValLeuGluTyrTyrCysLeuValVal : 308 |||| !!|||||||||.!.|||||||||:!!|||||||||||||||||||||||| uIlePheGluSerThrLeuIleLeuCysLeuLeuGluTyrTyrCysLeuValVal 300664 : AATCTTCGAGTCCACGCTGATTTTGTGTTTGCTCGAATACTACTGTTTGGTGGTA : 300719 vulgar: Lalb_14618 4 308 . KQ414889.1 299620 300719 + 871 M 123 369 G 1 0 M 7 21 F 0 2 M 42 126 S 0 1 5 0 2 I 0 41 3 0 2 S 1 2 M 75 225 G 0 3 M 20 60 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299621 300719 871 + . gene_id 1 ; sequence Lalb_14618 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 299621 300139 . + . KQ414889.1 exonerate:protein2genome:local exon 299621 300139 . + . insertions 0 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local splice5 300140 300141 . + . intron_id 1 ; splice_site "GC" KQ414889.1 exonerate:protein2genome:local intron 300140 300184 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300183 300184 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 300185 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300185 300476 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 300616 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 300615 300616 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300617 300719 . + . KQ414889.1 exonerate:protein2genome:local exon 300617 300719 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299621 300719 871 + . alignment_id 1 ; Query Lalb_14618 ; Align 299621 5 369 ; Align 299990 129 21 ; Align 300013 136 126 ; Align 300187 179 225 ; Align 300415 254 60 ; Align 300618 275 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 667 Query range: 17 -> 274 Target range: 289705 -> 290482 18 : ThrAsnProSerTyrLysSerAspValLysTyrThrLeuGluMetCysArgTrpValT : 37 :!!||| ! !!|||:!!!!!|||:!!:::||||||!!!|||:!:|||!.!|||:!! SerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleL 289706 : TCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCT : 289763 38 : hrLysProIleGlyValTrpProPheValTyrSerArgThrSerLysValGluLysLe : 56 !||||||||||||:!!!::|||||||||!:!||||||.!!|||!:! !|||::! euLysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgTh 289764 : TGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAAC : 289820 57 : uValAlaIleValLeuLeuThrValCysPheSerAspLeuLeuPheAlaThrIlePro : 75 !!.!:!!:!::!!|||:!! !||||||! !||| !|||! !||| !! !:!!||| rAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValPro 289821 : GGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCG : 289877 76 : ProGlyHisTyrLeuIlePheValGluLysAsnValTyrValIleValLysPheLeuG : 95 !.!!|||:!!:!!:!!||| !!!:!!.:!!:!! !!..!.!!|||||| !|||| PheSerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuG 289878 : TTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCG : 289937 96 : lyProLeuGlyPheCysIleSerSerAlaIleLysTyrLeuTyrLeuValPheLysGl : 114 |||||||| !||||||:!:!!!!!! !.!!||||||! !|||!!! !.!.||||| lyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGl 289938 : GACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGG : 289994 115 : yAsnLeuPheLysArgCysLeuValHisValGluArgAspTrpLysThrValValAsp : 133 |::: !.!! ||||||:!! !|||:!!|||||||||||||||! !:!! !||| ySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAsp 289995 : TTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGAC : 290051 134 : GlnArgTyrArgArgIleMetValArgGlnSerSerValSerArgGlnLeuIleValL : 153 :!! !:!!||| !||||||:!!||| ! !!!!:!!||||||.!.|||||| !| GluAspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysL 290052 : GAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAAC : 290111 154 : euCysAlaIlePheLeuTyrSerGlyGlyMetSerTyrHisThrIleMetProPheVa : 172 ||||||||||||||||||||! !||||||:!!||||||:!!|||:!!!!:|||!!. ! euCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPh 290112 : TGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTT : 290168 173 : lSerLysProLysMetArgGlyAsnGlnThrLeuArgProLeuIleTyrProGlyTyr : 191 !|||||| !!..:!!!.!|||||| !|||:!!|||||||||! !|||||||||||| eSerLysLysSerValAsnGlyAsnValThrIleArgProLeuThrTyrProGlyTyr 290169 : CTCGAAGAAGAGCGTGAACGGTAACGTGACTATCAGACCTCTAACTTATCCCGGTTAC : 290225 192 : AspAlaPhePheAspSerGlnAlaSerProThrTyrGluIleIlePheSerMetHisC : 211 !!:! !||||||||| !||| !||||||.!!|||||||||:!!|||!!!||||||| GluGluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetHisC 290226 : GAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACT : 290285 212 : ysLeuSerGlyPheIleLysTyrSerIleThrThrGlyAlaTyrSerLeuAlaAlaTh : 230 ||:!!! !! !.!.|||! ! !:!||||||! !!.!||||||||||||.!!.!!! ysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIl 290286 : GTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGAT : 290342 231 : rPheValThrHisIleCysGlyGlnValGlnIleGlnIleAlaArgLeuGluAsnLeu : 249 !|||!.!||||||! !|||||||||:!!:!!||||||! .!!|||||||||:!!||| ePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAspLeu 290343 : CTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTG : 290399 250 : ValGlu<-><->SerIleGlnLysAsnSerAspArgAsnProValAlaValIleValA : 267 ..!:!! ! !:!: !:!!!!..!!! !!!:!!! !:!!||||||:!!|||! ThrLysArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValValValS 290400 : ACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTGTGA : 290459 268 : rgGluHisValGluIleLeuArg : 274 !!! |||||||||||||||!:! erGlyHisValGluIleLeuLys 290460 : GCGGTCACGTGGAGATCTTGAAG : 290482 vulgar: Lalb_14618 17 274 . KQ414889.1 289705 290482 + 667 M 234 702 G 0 6 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289706 290482 667 + . gene_id 2 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289706 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289706 290482 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289706 290482 667 + . alignment_id 2 ; Query Lalb_14618 ; Align 289706 18 702 ; Align 290414 252 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 416 Query range: 20 -> 275 Target range: 221357 -> 222131 21 : SerTyrLysSerAspValLysTyrThrLeuGluMetCysArgTrpValThrLysProI : 40 ..!||||||!!!:!!||||||! !:!:!!:!!:!! !!||||||:!! !||||||| AspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProI 221358 : GATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGA : 221415 41 : leGlyValTrpProPheValTyrSerArgThrSerLysValGluLysLeuValAlaIl : 59 |||||||||||||| !! :!!!.!! !|||! !||||||!:!! !:!! ! leGlyValTrpPro---AsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTr 221416 : TCGGTGTTTGGCCA---AATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTG : 221469 60 : eValLeuLeuThrValCysPheSerAspLeuLeuPheAlaThrIleProProGlyHis : 78 :!!:!! !..!||||||!:!||| :!! !||| ! !:!!||| !.!!! ! pLeuIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeu 221470 : GCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTT : 221526 79 : TyrLeuIlePheValGluLysAsnValTyrValIleValLysPheLeuGlyProLeuG : 98 |||:!!|||.!!! !! !:!!:!!|||||| !! !:!!|||!!.||||||||||||. TyrValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuS 221527 : TACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGA : 221586 99 : lyPheCysIleSerSerAlaIleLysTyrLeuTyrLeuValPheLysGlyAsnLeuPh : 117 !!||||||:!:! !:!! !:!!||||||! ! |||:!!.!! ! ! !||| !.! erPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIl 221587 : GTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACAT : 221643 118 : eLysArgCysLeuValHisValGluArgAspTrpLysThrValValAspGlnArgTyr : 136 !:::..!|||:!!! !!.!:!!||| !!|||||||||!.!:!!..! !!...!:! !! eArgGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAsp 221644 : CCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGAT : 221700 137 : ArgArgIleMetValArgGlnSerSerValSerArgGlnLeuIleValLeuCysAlaI : 156 !:! !||||||:!!..!.!.:!!! ! !!.!!|||!:!||||||:!!:!!|||.!!. LysAspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrP 221701 : AAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACAT : 221760 157 : lePheLeuTyrSerGlyGlyMetSerTyrHisThrIleMetProPhe<->ValSerLy : 174 !!|||:!!||||||||| ::: |||::: ! !!!:|||||| |||.!!|| hePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLy 221761 : TTTTCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAA : 221817 175 : s<->ProLysMetArgGlyAsnGlnThrLeuArgProLeuIleTyrProGlyTyrAsp : 192 | ||| !..! ! ||| |||... |||:!!:!:!:!||| !! sIleProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArg 221818 : AATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGA : 221874 193 : AlaPhePheAspSerGlnAlaSerProThrTyrGluIleIlePheSerMetHisCysL : 212 !.!! !!|||!!!!:! !||||||..! !!||||||:!:||||||:!:!!. !: PheIleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleM 221875 : TTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTA : 221934 213 : euSerGlyPheIleLysTyrSerIleThrThrGlyAlaTyrSerLeuAlaAlaThrPh : 231 !!:!!||| !:!:! !:!!|||||||||:!!!.!|||! !||||||!.!|||! !|| etAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPh 221935 : TGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTT : 221991 232 : eValThrHisIleCysGlyGlnValGlnIleGlnIleAlaArgLeuGluAsnLeuVal : 250 |!.!..!||| !|||||||||:!!|||:!: !!!:::! !!|||:!!:!!|||:!! eAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIle 221992 : TGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATC : 222048 251 : <-><->GluSerIleGlnLysAsnSerAspArgAsnProValAlaValIleValArgG : 268 ..!:!! !..! |||!:!! !!.. !:!!||| !||||||!.!: AsnGlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnG 222049 : AACGGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATC : 222108 269 : luHisValGluIleLeuArgPhe : 275 !!||||||..!||||||!:!!:! lnHisValArgIleLeuGlnTyr 222109 : AACACGTTCGAATATTGCAGTAT : 222131 vulgar: Lalb_14618 20 275 . KQ414889.1 221357 222131 + 416 M 24 72 G 1 0 M 126 378 G 0 3 M 3 9 G 0 3 M 76 228 G 0 6 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221358 222131 416 + . gene_id 3 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221358 222131 . + . KQ414889.1 exonerate:protein2genome:local exon 221358 222131 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221358 222131 416 + . alignment_id 3 ; Query Lalb_14618 ; Align 221358 21 72 ; Align 221430 46 378 ; Align 221811 172 9 ; Align 221823 175 228 ; Align 222057 251 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 400 Query range: 22 -> 206 Target range: 294672 -> 295227 23 : LysSerAspValLysTyrThrLeuGluMetCysArgTrpValThrLysProIleGlyV : 42 !:!!:!|||||| ! !!!:!|||:!! |||||| !!:!! !||||||||||||: ArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyL 294673 : AGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTC : 294730 43 : alTrpProPheValTyrSerArgThrSerLysValGluLysLeuValAlaIleValLe : 61 !!||||||.!!:!!||||||!.!|||||||||:!!.!.|||:!!:!!:!!|||:!!|| euTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLe 294731 : TTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCT : 294787 62 : uLeuThrValCysPheSerAspLeuLeuPheAlaThrIleProProGlyHisTyrLeu : 80 |:!!.!! !||| ! ! !:!!||||||!.! !:!:||| !|||:!!!:!! ! uIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCys 294788 : GATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGT : 294844 81 : IlePheValGluLysAsnValTyrValIleValLysPheLeuGlyProLeuGlyPheC : 100 :!!||| !! ||||||||| ::: :!!|||.!!|||||||||:!! !!:!! ValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrS 294845 : GTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACT : 294904 101 : ysIleSerSerAlaIleLysTyrLeuTyrLeuValPheLysGlyAsnLeuPheLysAr : 119 !!!: !||| !:!!!:!||| !! !||||||!!.||| ! ! !||||||!. erMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHi 294905 : CTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCA : 294961 120 : gCysLeuValHisValGluArgAspTrpLysThrValValAspGlnArgTyrArgArg : 138 !|||:!!! ! !!:!!|||!.!||||||||| !:!!! !:!!! !..!:!!||| ! sCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAla 294962 : TTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCG : 295018 139 : IleMetValArgGlnSerSerValSerArgGlnLeuIleValLeuCysAlaIlePheL : 158 ||||||:!!!:!.!.:!!! !|||!!!!:!::!:!!! !||| !! !.!!|||.!.: IleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleI 295019 : ATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAA : 295078 159 : euTyrSerGlyGlyMetSerTyrHisThrIleMetProPheValSerLysPro<->Ly : 176 !!||||||..!!.!:!!|||||||||.!!|||:::|||||| |||... :! leTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGl 295079 : TCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGA : 295135 177 : sMetArgGlyAsnGlnThrLeuArgProLeuIleTyrProGlyTyrAspAlaPhePhe : 195 !! !:! !|||.!.|||:!!||| !!||| ! !|||||||||!!: !||| ! uAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheVal 295136 : GAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTA : 295192 196 : AspSerGlnAlaSerProThrTyrGluIleIle : 206 |||:!! ! :!!||||||||||||||||||||| AspAlaTyrSerSerProThrTyrGluIleIle 295193 : GACGCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: Lalb_14618 22 206 . KQ414889.1 294672 295227 + 400 M 153 459 G 0 3 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294673 295227 400 + . gene_id 4 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294673 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294673 295227 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294673 295227 400 + . alignment_id 4 ; Query Lalb_14618 ; Align 294673 23 459 ; Align 295135 176 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 377 Query range: 17 -> 254 Target range: 284493 -> 285216 18 : ThrAsnProSerTyrLysSerAspValLysTyrThrLeuGluMetCysArgTrpValT : 37 |||:!! !!!!!!:: ! !!!||| !! !|||!:!:!!:!!||| !|||||| !! ThrAspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheL 284494 : ACCGATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTC : 284551 38 : hrLysProIleGlyValTrpProPheValTyrSerArgThrSerLysValGluLysLe : 56 !|||||||||||||||||||||.!! ! !!!! !|||!!! :!!||||||:! euLysProIleGlyValTrpProLeuSerLeuCysValThrThr---LeuGluLysIl 284552 : TCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACC---TTGGAAAAGAT : 284605 57 : uValAlaIleValLeuLeuThrValCysPheSerAspLeuLeuPheAlaThrIlePro : 75 ! !:!!:!:|||||| ! !:!! !!! !! ! :!! !||| ! !:!!||| eSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValPro 284606 : CAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCG : 284662 76 : ProGlyHisTyrLeuIlePheValGluLys<->AsnValTyrValIleValLysPheL : 94 !!.!! ! ! !:!:.!!! !:!!! :!!:!! !!..!! :!!|||.!.: CysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetI 284663 : TGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGA : 284722 95 : euGlyProLeuGlyPheCysIleSerSerAlaIleLysTyrLeuTyrLeuValPheLy : 113 !!|||||||||.!!||||||!!:! !:!!||||||||||||! ! !|||:!!! :: leGlyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerAr 284723 : TCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCG : 284779 114 : sGlyAsnLeuPheLysArgCysLeuValHisValGluArgAspTrpLysThrValVal : 132 :|||..! !.!! !:!|||:!! ! !!:!!... !||||||... !..!:!! gGlyGlyLysIleGlyGlnCysValLysAspIleArgAlaAspTrpSerLeuThrLeu 284780 : CGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTT : 284836 133 : <-><-><->AspGlnArgTyrArgArgIleMetValArgGlnSerSerValSerArgG : 149 ...:::... |||...|||||| ! !...:!!!!!:!!.!!|||. SerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgS 284837 : TCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGAT : 284896 150 : lnLeuIleValLeuCysAlaIlePheLeuTyrSerGlyGlyMetSerTyrHisThrIl : 168 ..||| :!!!!!|||||| !|||:!!||||||||||||.!.! !||| !|||:! erLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrVa 284897 : CTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGT : 284953 169 : eMetProPheValSer<->LysProLysMetArgGlyAsnGlnThrLeuArgProLeu : 186 :||||||!!. !!!! ::: !!:!!!!:! !! !|||:!!|||:!!||| !!! ! lMetProLeuCysThrValArgThrGluIleIleAspAsnGluThrValArgSerGln 284954 : GATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAA : 285010 187 : IleTyrProGlyTyrAspAlaPhePheAspSerGlnAlaSerProThrTyrGluIleI : 206 !:!||| !||| !!.!.!!.!!||| !!!::.!!||||||:!!!:!||||||: AlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleV 285011 : GCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCG : 285070 207 : lePheSerMetHisCysLeuSerGlyPheIleLysTyrSerIleThrThrGlyAlaTy : 225 !: ! !|||!!.||||||:!!!.!|||:!!! !||||||:!!|||..!||||||! alGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCy 285071 : TGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTG : 285127 226 : rSerLeuAlaAlaThrPheValThrHisIleCysGlyGlnValGlnIleGlnIleAla : 244 !||||||||||||..!||||||! !|||:!!||||||||| !!::!|||! :!:.!! sSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThr 285128 : CAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACA : 285184 245 : ArgLeuGluAsnLeuValGluSerIleGln : 254 !:!|||!!:!!.||||||!!:.!!:!::!! LysLeuAspLysLeuValAspGlyValLys 285185 : AAGCTGGATAAGCTCGTCGACGGAGTGAAA : 285216 vulgar: Lalb_14618 17 254 . KQ414889.1 284493 285216 + 377 M 34 102 G 1 0 M 33 99 G 0 3 M 47 141 G 0 9 M 41 123 G 0 3 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284494 285216 377 + . gene_id 5 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284494 285216 . + . KQ414889.1 exonerate:protein2genome:local exon 284494 285216 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284494 285216 377 + . alignment_id 5 ; Query Lalb_14618 ; Align 284494 18 102 ; Align 284596 53 99 ; Align 284698 86 141 ; Align 284848 133 123 ; Align 284974 174 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 363 Query range: 4 -> 274 Target range: 217105 -> 217924 5 : MetArgAspArgSerAlaAspArgAlaAspGlyHisPheThrAsnProSerTyrLysS : 24 |||!:! ! ! !:!!.!!:!!!:!! !.!...!! ! |||:!! !...|||:::. MetGlnLysLeuAlaThrAsnLysGluGlnSerProArgThrAspTyrGluTyrGluL 217106 : ATGCAAAAACTTGCAACAAACAAGGAACAATCCCCCAGAACCGACTACGAgtacgaga : 217163 25 : erAspValLysTyrThrLeuGluMetCysArgTrpValThrLysProIleGlyValTr : 43 ..::::::... ::!:!!:!! ! !||||||:!! !||||||!!:|||:!!|| ysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTr 217164 : aaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTG : 217220 44 : pProPheValTyrSerArgThrSerLysValGluLysLeuValAlaIleValLeuLeu : 62 |||| ! ! !!!! |||!!!!:! !..!|||:!!:!! !! !:!!:!! ! pProAsnSerArgThr---ThrThrArgSerArgLysIleLeuTyrLysLeuIleAsn 217221 : GCCAAACTCACGTACC---ACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAAC : 217274 63 : ThrValCysPheSerAspLeuLeuPheAlaThrIleProProGlyHisTyrLeuIleP : 82 .!!:!!|||!:!.!! :!! !||| ! !:!!||| !..! |||:!!.!!. AlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheL 217275 : GCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCC : 217334 83 : heValGluLysAsnValTyrValIleValLysPheLeuGlyProLeuGlyPheCysIl : 101 !!! !! :!!:!!:!!|||! !! :!!|||.!.!!!||||||||| !||||||:! euGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysVa 217335 : TCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGT : 217391 102 : eSerSerAlaIleLysTyrLeuTyrLeuValPheLysGlyAsnLeuPheLysArgCys : 120 :! !:!! !:!!||||||! !! !|||:!! !! ! ! !.!!:::..!||| lMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCys 217392 : GATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGC : 217448 121 : LeuValHisValGluArgAspTrpLysThrValValAspGlnArgTyrArgArgIleM : 140 :!! !...:!!||||||||||||!:!!.!||| ! !:!!!:! !!|||..! | ValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArgGluAlaM 217449 : GTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGA : 217508 141 : etValArgGlnSerSerValSerArgGlnLeuIleValLeuCysAlaIlePheLeuTy : 159 ||:!! !.!.:!!!:! !!.!!|||:!!|||:!!:!!||||||.!!.!!|||:!!|| etIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetTy 217509 : TGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTA : 217565 160 : rSerGlyGlyMetSerTyrHisThrIleMetProPhe<->ValSerLys<->ProLys : 176 ||||||| ::: |||::: ! !!!:|||.!! |||.!!!:! ! !..! rSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSer 217566 : CAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCG : 217622 177 : MetArgGlyAsnGlnThrLeuArgProLeuIleTyrProGlyTyrAspAlaPhePheA : 196 !!.!||||||! |||!!!! !||||||:!:!:!||| ! ! !.!!.!!| GluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyrIleIleA 217623 : GAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCG : 217682 197 : spSerGlnAlaSerProThrTyrGluIleIlePheSerMetHisCysLeuSerGlyPh : 215 ||!!!!:: !!!!|||||| !!||||||:!:|||! !:!:!!.! :!!:!!||| spThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAl 217683 : ATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGC : 217739 216 : eIleLysTyrSerIleThrThrGlyAlaTyrSerLeuAlaAlaThrPheValThrHis : 234 !:!:! !:!!.!!||||||:!!!.!|||! !||||||||||||.!!|||!.!..!||| aLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHis 217740 : TTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCAT : 217796 235 : IleCysGlyGlnValGlnIleGlnIleAlaArgLeuGluAsnLeuValGluSerIleG : 254 !|||||||||:!!:!!:!: !!!: ! !!|||:!!:!!|||:!!!!:.!!! ! AlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgA 217797 : GCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGAG : 217856 255 : lnLysAsnSerAspArg<-><->AsnProValAlaValIleValArgGluHisValGl : 271 ! ! ! ||||||! ! ..! !:!!||| !||||||!!!:!!||||||.. laAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnHisValAr 217857 : CGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCG : 217913 272 : uIleLeuArg : 274 !||||||!:! gIleLeuLys 217914 : GATATTAAAG : 217924 vulgar: Lalb_14618 4 274 . KQ414889.1 217105 217924 + 363 M 44 132 G 1 0 M 122 366 G 0 3 M 3 9 G 0 3 M 85 255 G 0 6 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217106 217924 363 + . gene_id 6 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217106 217924 . + . KQ414889.1 exonerate:protein2genome:local exon 217106 217924 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217106 217924 363 + . alignment_id 6 ; Query Lalb_14618 ; Align 217106 5 132 ; Align 217238 50 366 ; Align 217607 172 9 ; Align 217619 175 255 ; Align 217880 260 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 358 Query range: 17 -> 254 Target range: 278546 -> 279269 18 : ThrAsnProSerTyrLysSerAspValLysTyrThrLeuGluMetCysArgTrpValT : 37 |||:!! !!!!!!::!!.!!!||| !! !|||!:!:!!:!!||| !|||||| !! ThrAspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheL 278547 : ACCGATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTC : 278604 38 : hrLysProIleGlyValTrpProPheValTyrSerArgThrSerLysValGluLysLe : 56 !|||||||||||||||||||||.!! ! !!!! !|||!!! :!!||||||:! euLysProIleGlyValTrpProLeuSerLeuCysValThrThr---LeuGluLysIl 278605 : TCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACC---TTGGAAAAGAT : 278658 57 : uValAlaIleValLeuLeuThrValCysPheSerAspLeuLeuPheAlaThrIlePro : 75 ! !:!!:!:|||||| ! !:!! !!! !! ! :!! !||| ! !:!!||| eSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValPro 278659 : CAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCG : 278715 76 : ProGlyHisTyrLeuIlePheValGluLys<->AsnValTyrValIleValLysPheL : 94 !!.!! ! ! !:!:.!!! !:!!! :!!:!! !!..!! :!!|||.!.: CysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetI 278716 : TGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGA : 278775 95 : euGlyProLeuGlyPheCysIleSerSerAlaIleLysTyrLeuTyrLeuValPheLy : 113 !!|||||||||.!!||||||! ! !:!!.!!|||||||||! ! !|||:!!! :: leGlyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerAr 278776 : TCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCG : 278832 114 : sGlyAsnLeuPheLysArgCysLeuValHisValGluArgAspTrpLysThrValVal : 132 :|||..! !.!! !:!|||:!! ! !!:!!...! !||||||... !..!:!! gGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeu 278833 : CGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTT : 278889 133 : AspGlnArgTyr<-><-><->ArgArgIleMetValArgGlnSerSerValSerArgG : 149 ... ! ||| |||...|||||| ! !...:!!!!!:!!.!!|||. SerTyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgS 278890 : TCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGAT : 278949 150 : lnLeuIleValLeuCysAlaIlePheLeuTyrSerGlyGlyMetSerTyrHisThrIl : 168 ..||| :!!!!! !!||| !|||:!!||||||||||||:!:! !||| !.!!:! erLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaVa 278950 : CTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGT : 279006 169 : eMetPro<->PheValSerLysProLysMetArgGlyAsnGlnThrLeuArgProLeu : 186 :|||||| |||!.! !::: !!:!!!!:! !! !|||:!!|||:!!||| !!! ! lMetProLeuPheAlaValArgThrGluIleIleAspAsnGluThrValArgSerGln 279007 : GATGCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAA : 279063 187 : IleTyrProGlyTyrAspAlaPhePheAspSerGlnAlaSerProThrTyrGluIleI : 206 !:!||| !||| !!.!.!!.!!||| !!!::.!!||||||:!!!:!||||||: AlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleV 279064 : GCGTTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCG : 279123 207 : lePheSerMetHisCysLeuSerGlyPheIleLysTyrSerIleThrThrGlyAlaTy : 225 !: ! !|||!!.||||||:!!!.!|||:!! !||||||:!!|||..!||||||! alGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCy 279124 : TGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTG : 279180 226 : rSerLeuAlaAlaThrPheValThrHisIleCysGlyGlnValGlnIleGlnIleAla : 244 !|||||| !|||..!||||||! !|||:!!||||||||| !!::!|||! :!:.!! sSerLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThr 279181 : CAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACA : 279237 245 : ArgLeuGluAsnLeuValGluSerIleGln : 254 !:!|||!!:!!.|||:!!!!:.!!:!::!! LysLeuAspLysLeuIleAspGlyValLys 279238 : AAGCTGGATAAGCTCATCGACGGAGTGAAA : 279269 vulgar: Lalb_14618 17 254 . KQ414889.1 278546 279269 + 358 M 34 102 G 1 0 M 33 99 G 0 3 M 51 153 G 0 9 M 34 102 G 0 3 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278547 279269 358 + . gene_id 7 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278547 279269 . + . KQ414889.1 exonerate:protein2genome:local exon 278547 279269 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278547 279269 358 + . alignment_id 7 ; Query Lalb_14618 ; Align 278547 18 102 ; Align 278649 53 99 ; Align 278751 86 153 ; Align 278913 137 102 ; Align 279018 171 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 347 Query range: 16 -> 251 Target range: 208179 -> 208887 17 : PheThrAsnProSerTyrLysSerAspValLysTyrThrLeuGluMetCysArgTrpV : 36 ||| !||| !!:!||||||!:!|||:!!!..!:!!.!:!!...:!! ! !|||. PheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpT 208180 : TTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGA : 208237 37 : alThrLysProIleGlyValTrpProPheValTyrSerArgThrSerLysValGluLy : 55 .! !||| !|||||| !|||||| ! ..!||| ||| !:!!|||!! hrLeuLysIleIleGlySerTrpProArgSerIleAspArg---SerTrpLeuGluAs 208238 : CGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGT---TCCTGGTTAGAGAA : 208291 56 : sLeuValAlaIleValLeuLeuThrValCysPheSerAspLeuLeuPheAlaThrIle : 74 . ! ! !|||:!!||| !..!:!! !! !!!! ||| !||| !..!||| nSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIle 208292 : CAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATA : 208348 75 : ProProGlyHisTyrLeuIlePheValGluLysAsnValTyrValIleValLysPheL : 94 ||| !!||| !:! !|||.!!|||! :!!:!! !!|||! ! !:!!|||.!!! ProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleC 208349 : CCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCT : 208408 95 : euGlyProLeuGlyPheCysIleSerSerAlaIleLysTyrLeuTyrLeuValPheLy : 113 !.!! !!|||.!!|||! !!!:! !:!! !! ||||||:!! !:!!..! !!:: ysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValAr 208409 : GTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCG : 208465 114 : sGlyAsnLeuPheLysArgCysLeuValHisValGluArgAspTrpLysThrValVal : 132 :! !..! !.!.::!!:!|||:!!! !:!!|||||| !||||||!:!!.!|||! ! gGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGlu 208466 : CGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAG : 208522 133 : AspGlnArgTyrArgArgIleMetValArgGlnSerSerValSerArgGlnLeuIleV : 152 !!:!!..! !!|||!:!||||||:!! !.!.:!!||| !!:!!|||:!!||||||| HisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleV 208523 : CACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCG : 208582 153 : alLeuCysAlaIlePheLeuTyrSerGlyGlyMetSerTyrHisThrIleMetProPh : 171 ||:!!|||!.! !|||:!!|||.!!||| ::: |||::: ! !:!!|||.! alIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLe 208583 : TGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCT : 208639 172 : eValSerLysProLysMetArg<-><->GlyAsnGlnThrLeuArgProLeuIleTyr : 188 !..! !! ! ! :!:..! |||||| !|||! !||| !|||:!!||| uThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyr 208640 : CACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTAT : 208696 189 : ProGlyTyrAspAlaPhePheAspSerGlnAlaSerProThrTyrGluIleIlePheS : 208 |||! ! ! ! !.!!.!.||| !!:! !||||||..! !!||||||.!!!:!! ProValProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrT 208697 : CCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATA : 208756 209 : erMetHisCysLeuSerGlyPheIleLysTyrSerIleThrThrGlyAlaTyrSerLe : 227 !!:!:!!.! ||||||||||||:!! :!!!:!||||||..!||||||! !.!!|| hrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLe 208757 : CGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTT : 208813 228 : uAlaAlaThrPheValThrHisIleCysGlyGlnValGlnIleGlnIleAlaArgLeu : 246 ||||||| !.!!!.!! !||| |||||||||:!!|||||| !!!::!! !!:!! uAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMet 208814 : GGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATG : 208870 247 : GluAsnLeuValGlu : 251 |||!!.||||||!!: GluLysLeuValAsp 208871 : GAGAAGTTGGTCGAT : 208887 vulgar: Lalb_14618 16 251 . KQ414889.1 208179 208887 + 347 M 33 99 G 1 0 M 128 384 G 0 6 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208180 208887 347 + . gene_id 8 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208180 208887 . + . KQ414889.1 exonerate:protein2genome:local exon 208180 208887 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208180 208887 347 + . alignment_id 8 ; Query Lalb_14618 ; Align 208180 17 99 ; Align 208279 51 384 ; Align 208669 179 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 337 Query range: 27 -> 274 Target range: 266637 -> 267390 28 : TyrThrLeuGluMetCysArgTrpValThrLysProIleGlyValTrpProPheValT : 47 |||!:!|||:!!:!! !|||||| !! !||||||||||||!.!|||||| !! TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpPro---ProL 266638 : TACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCG---CCGT : 266692 48 : yrSerArgThrSerLysValGluLysLeuValAlaIleValLeuLeuThrValCysPh : 66 |||! !|||||||||:!!|||::!:!!|||:!! !!.!|||:!!..!:!!|||!: euSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266693 : TGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 67 : eSerAspLeuLeuPheAlaThrIleProProGlyHisTyrLeuIlePheValGluLys : 85 !!!!..!:!!||||||.!!..!|||||| ! ! !:!!|||:!!.!.! !!!::!! rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 86 : AsnValTyrValIleValLysPheLeuGlyProLeuGlyPheCysIleSerSerAlaI : 105 !:!:!! !..!! !|||||| ! !!!|||||||||.!! !!! .!! !.!!!.!| SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 106 : leLysTyrLeuTyrLeuValPheLysGlyAsnLeuPheLysArgCysLeuValHisVa : 124 ||!!.||| ! |||:!!.!.:::.!!!!. !.!.::: !!|||:!!! !|||:! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 125 : lGluArgAspTrpLysThrValValAspGlnArgTyrArgArgIleMetValArgGln : 143 !:!!! !||||||!:!! !|||..! ! !..! !!!:!!:!:!:|||:!!!:!.!. tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 144 : SerSerValSerArgGlnLeuIleValLeuCysAlaIlePheLeuTyrSerGlyGlyM : 163 :!!!!!:!!.!!||| ! :!! !:!!!!!|||||| |||:!! ! !!!|||! !: AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 164 : etSerTyrHisThrIleMetProPheValSerLysProLysMetArgGlyAsnGlnTh : 182 !:.!!||| !..!|||! ! !!|||..!! !:!! !! ! !||||||:!!|| euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 183 : rLeuArgProLeuIleTyrPro<-><->GlyTyrAspAlaPhePheAspSerGlnAla : 199 | !! ! !! !:!:! ||| ! !||| ! !.!..!!! !.!..!! rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 200 : SerProThrTyrGluIleIlePheSerMetHisCysLeuSerGlyPheIleLysTyrS : 219 ||||||||| !!||||||:!!.!! ! !!.! !:!!|||||||||||| ! !!| SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 220 : erIleThrThrGlyAlaTyrSerLeuAlaAlaThrPheValThrHisIleCysGlyGl : 238 ||! !..!..!||||||!:!||||||||||||..!|||!.!.!!||| |||||||| erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 239 : nValGlnIleGlnIleAlaArgLeuGluAsnLeuVal<-><-><->GluSerIleGln : 254 |:!!...:!:! !!!: ! !!:!!:!!.!.!!!||| ..!..!! !.!. nLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsn 267272 : GCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAAT : 267328 255 : LysAsnSerAspArgAsnProValAlaValIleValArgGluHisValGluIleLeuA : 274 |||||| ! ! !:!! !:!!!.!|||:!!|||..!.!.|||:!!..!:!!|||| LysAsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeuA 267329 : AAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGA : 267388 275 : rg : 274 || rg 267389 : GG : 267390 vulgar: Lalb_14618 27 274 . KQ414889.1 266637 267390 + 337 M 17 51 G 1 0 M 144 432 G 0 6 M 61 183 G 0 9 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266638 267390 337 + . gene_id 9 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266638 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266638 267390 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 266638 267390 337 + . alignment_id 9 ; Query Lalb_14618 ; Align 266638 28 51 ; Align 266689 46 432 ; Align 267127 190 183 ; Align 267319 251 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 330 Query range: 127 -> 274 Target range: 304425 -> 304869 128 : TrpLysThrValValAspGlnArgTyrArgArgIleMetValArgGlnSerSerValS : 147 !:::!! !|||! !..!! ||| !!|||..!!!:|||:!!!:! ! .!!..!:!!. TyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetG 304426 : TATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGG : 304483 148 : erArgGlnLeuIleValLeuCysAlaIlePheLeuTyrSerGlyGlyMetSerTyrHi : 166 !!|||.!.|||! :!!:!!||||||||||||:!!|||!!!||||||! ! !||||| lyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHi 304484 : GTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCA : 304540 167 : sThrIleMetProPheValSerLysProLysMet<->ArgGlyAsnGlnThrLeuArg : 184 ||||:!!|||! !|||!.!!!! ! !! ! :!! ..! !|||!::|||:!!!:! sThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgThrIleLys 304541 : CACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAA : 304597 185 : ProLeuIleTyrProGlyTyrAspAlaPhePheAspSerGlnAlaSerProThrTyrG : 204 ||||||:!!|||||| !|||..!|||!!.|||||| !|||.!!||||||! !|||| ProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIleTyrG 304598 : CCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACG : 304657 205 : luIleIlePheSerMetHisCysLeuSerGlyPheIleLysTyrSerIleThrThrGl : 223 ||:!::!!!:!! !:!:||||||:!!!!!|||!:!:!!! ||||||||||||.!!|| luLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThrAlaGl 304658 : AATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGG : 304714 224 : yAlaTyrSerLeuAlaAlaThrPheValThrHisIleCysGlyGlnValGlnIleGln : 242 ||||! !.!!||||||||| !|||!.!|||||| !|||||||||:!!.!.||| yAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleVal 304715 : TGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTT : 304771 243 : IleAlaArgLeuGluAsnLeuValGluSerIleGlnLysAsnSerAspArgAsnProV : 262 !!::!!||||||! :!!||||||.!.|||! !:!!..!::!..! !!!.! !: MetSerArgLeuGlyAspLeuValAsnSerLysGluSerSerAspLeuAspLysArgL 304772 : ATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCATCTGATTTAGATAAACGAT : 304831 263 : alAlaValIleValArgGluHisValGluIleLeuArg : 274 !! !! !||||||..!.!.|||:!!..!||||||||| euIleGluIleValGluHisHisLeuArgIleLeuArg 304832 : TAATAGAAATTGTTGAGCATCATTTGCGAATTTTAAGG : 304869 vulgar: Lalb_14618 127 274 . KQ414889.1 304425 304869 + 330 M 50 150 G 0 3 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304426 304869 330 + . gene_id 10 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304426 304869 . + . KQ414889.1 exonerate:protein2genome:local exon 304426 304869 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304426 304869 330 + . alignment_id 10 ; Query Lalb_14618 ; Align 304426 128 150 ; Align 304579 178 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 328 Query range: 16 -> 261 Target range: 259739 -> 260477 17 : PheThrAsnProSerTyrLysSerAspValLysTyrThrLeuGluMetCysArgTrpV : 36 |||..!.!. !!|||!:!! ||| !! ! ! |||!:!|||:!!.!. !|||||| PheValGluThrSerPheThrSerHisSerAspTyrSerLeuGlnPheAsnArgTrpP 259740 : TTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCCAATTTAATCGATGGT : 259797 37 : alThrLysProIleGlyValTrpProPheValTyrSerArgThrSerLysValGluLy : 55 !! !||||||||||||!.!|||||| !! ||| !|||!!!!:!:!!||||| heLeuLysProIleGlyAlaTrpPro---ProSerSerSerThrThrArgLeuGluLy 259798 : TCCTGAAACCGATAGGCGCTTGGCCA---CCTTCATCCTCCACGACCAGACTCGAGAA : 259851 56 : sLeuValAlaIleValLeuLeuThrValCysPheSerAspLeuLeuPheAlaThrIle : 74 |:!!:!!:!!:!!:!!|||:!! !:!!|||!:!||| !:!!||| !!.!! !||| sIleIleSerValIleLeuIlePheIleCysTyrSerThrIleLeuValThrLeuIle 259852 : GATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATACTGGTCACCCTGATC : 259908 75 : ProProGlyHisTyrLeuIlePheValGluLysAsnValTyrValIleValLysPheL : 94 ||| !! !! !:!!:!!:!!.!!! !:!!:!!!:!:!!|||:!!! !..!||| ! | ProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrMetLysThrLysValL 259909 : CCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGAAGGTGC : 259968 95 : euGlyProLeuGlyPheCysIleSerSerAlaIleLysTyrLeuTyrLeuValPheLy : 113 ||||||||||| ! !!! .!! !.!!..!|||!!.||| ! |||:!!!!.!: euGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrThrThrLeuLeuLeuAr 259969 : TCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTGTTGAG : 260025 114 : sGlyAsnLeuPheLysArgCysLeuValHisValGluArgAspTrpLysThrValVal : 132 !|||!.. !.!. !!!|||:!!! !|||||||||!.!||||||!:!! !:!!..! gGlyArgAspIleLeuSerCysValGluHisValGluAsnAspTrpArgIleIleThr 260026 : AGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGAATTATAACG : 260082 133 : AspGlnArgTyrArgArgIleMetValArgGlnSerSerValSerArgGlnLeuIleV : 152 :!!!:! !!!:!!.!:!:|||:!!||| ! :!!!.! !!.!!||| ! :!! !! ArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgTyrValAlaA 260083 : AGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGATACGTCGCTG : 260142 153 : alLeuCysAlaIlePheLeuTyrSerGlyGlyMetSerTyrHisThrIleMetProPh : 171 .!! !|||||| !|||:!! ! .!!|||! !:!!!!!!:! ! !:!!! ! !!! laSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCysLeuValThrValLe 260143 : CCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTCACGGTGTT : 260199 172 : eValSerLysProLysMetArgGlyAsnGlnThrLeuArgProLeuIleTyrPro<-> : 190 . !!!!:!! !! !... !||||||:!!||| !! ! !! !:!:! ||| uSerThrGluValIleGlnValGlyAsnGluThrArgIleValHisLeuLeuProCys 260200 : GAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTGCCGTGC : 260256 191 : <->GlyTyrAspAlaPhePheAspSerGlnAlaSerProThrTyrGluIleIlePheS : 208 ! !||| ! ! !.!..!.:!! !.!.! !||||||! ! !!||||||:!!.!! AlaValTyrLysGluLeuIleAsnValAsnAspSerProMetAsnGluIleValLeuV 260257 : GCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGATTGTTCTCG : 260316 209 : erMetHisCysLeuSerGlyPheIleLysTyrSerIleThrThrGlyAlaTyrSerLe : 227 !:!!!!.! !:!!|||||||||||| ! !!|||! !|||..!||| !!:!||||| alValGlnPheValSerGlyPheIleValAsnSerSerThrValGlyIlePheSerLe 260317 : TCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTTCAGTCT : 260373 228 : uAlaAlaThrPheValThrHisIleCysGlyGlnValGlnIleGlnIleAlaArgLeu : 246 |||||||..!.!...!.!!||| |||||||||:!!.!.:!:! !!:! ! !!:!! uAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMetGluTrpIle 260374 : CGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAATGGATC : 260430 247 : GluAsnLeuValGluSerIleGlnLysAsnSerAspArgAsnPro : 261 !.!.!!!|||!!:..! ::!!!.!..!.! ! !:! !||| ThrGluPheValAspGluSerArgAsnArgLysLysLysAlaPro 260431 : ACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTCCT : 260477 vulgar: Lalb_14618 16 261 . KQ414889.1 259739 260477 + 328 M 28 84 G 1 0 M 144 432 G 0 6 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259740 260477 328 + . gene_id 11 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259740 260477 . + . KQ414889.1 exonerate:protein2genome:local exon 259740 260477 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 259740 260477 328 + . alignment_id 11 ; Query Lalb_14618 ; Align 259740 17 84 ; Align 259824 46 432 ; Align 260262 190 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 328 Query range: 20 -> 274 Target range: 274362 -> 275136 21 : SerTyrLysSerAspValLysTyrThrLeuGluMetCysArgTrpValThrLysProI : 40 !:!!:! ! ||| ! ! ! |||!:!|||:!!:!! !|||||| !! !||||||| AsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 274363 : AATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTA : 274420 41 : leGlyValTrpProPheValTyrSerArgThrSerLysValGluLysLeuValAlaIl : 59 |||||!.!||||||!!.!.! |||! !|||!!!||| !!|||::!:!!:!!:!! leGlyAlaTrpProLeuAla---SerProThrThrLysPheGluArgIleLeuSerHi 274421 : TAGGCGCGTGGCCGTTAGCC---TCGCCCACCACGAAATTCGAACGAATCCTTTCACA : 274474 60 : eValLeuLeuThrValCysPheSerAspLeuLeuPheAlaThrIleProProGlyHis : 78 !:::|||::: :::|||::!!!! !:!!|||! !.!!..!|||||| ! ! ! sLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIlePhe 274475 : CCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTT : 274531 79 : TyrLeuIlePheValGluLysAsnValTyrValIleValLysPheLeuGlyProLeuG : 98 :!!:!!|||.!.|||!!::!!!:!:!!:!!:!!! :!!|||!!.||||||||||||| HisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuG 274532 : CACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCG : 274591 99 : lyPheCysIleSerSerAlaIleLysTyrLeuTyrLeuValPheLysGlyAsnLeuPh : 117 || !!! .!!! !.!!!.!|||!!.||| ! |||:!!.!.:::.!!!!. !.! lyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIl 274592 : GTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGAT : 274648 118 : eLysArgCysLeuValHisValGluArgAspTrpLysThrValValAspGlnArgTyr : 136 .::: !!|||:!!! !|||:!!:!!! !||||||!:!! !|||..! ! !..! !! eArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAsp 274649 : ACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGAT : 274705 137 : ArgArgIleMetValArgGlnSerSerValSerArgGlnLeuIleValLeuCysAlaI : 156 !:!!:!:!:|||:!!!:!.!.:!!!.!:!!.!!||| ! :!! :!!!!!|||||| GlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaA 274706 : CAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGG : 274765 157 : lePheLeuTyrSerGlyGlyMetSerTyrHisThrIleMetProPheValSerLysPr : 175 |||:!! ! !!!|||! !:!:!!!||| !..!|||! !!|||..!! !:!! ! laPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGlnTh 274766 : CGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGAC : 274822 176 : oLysMetArgGlyAsnGlnThrLeuArgProLeuIleTyrPro<-><->GlyTyrAsp : 192 ! ... !||||||:!!||| !! ! !! !!!:! ||| !.!||| ! rValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLys 274823 : CGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAG : 274879 193 : AlaPhePheAspSerGlnAlaSerProThrTyrGluIleIlePheSerMetHisCysL : 212 !.!! !!! !.!..!!||||||||| !!||||||:!!.!!:!! !!!.! !: LysIleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnPheV 274880 : AAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCG : 274939 213 : euSerGlyPheIleLysTyrSerIleThrThrGlyAlaTyrSerLeuAlaAlaThrPh : 231 !!|||||||||||| ! !!|||! !.!!..!||||||!:!||||||||||||..!|| alSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPh 274940 : TGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTT : 274996 232 : eValThrHisIleCysGlyGln<-><-><->ValGlnIleGlnIleAlaArgLeuGlu : 247 |!.!.!!||| !! !|||||| :!!..!||| !|||.!!..!!!!! ! eAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheVal 274997 : CGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTG : 275053 248 : AsnLeuValGluSerIleGlnLysAsnSerAspArgAsnProValAlaValIleValA : 267 |||! ! !..!... ...|||||| ::! !:!!!.!|||:!!|||. AsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValValValG 275054 : AATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCG : 275113 268 : rgGluHisValGluIleLeuArg : 274 .!.!.|||:!!..!:!!|||||| luHisHisLeuArgValLeuArg 275114 : AACATCATCTGAGGGTACTCAGG : 275136 vulgar: Lalb_14618 20 274 . KQ414889.1 274362 275136 + 328 M 26 78 G 1 0 M 142 426 G 0 6 M 49 147 G 0 9 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274363 275136 328 + . gene_id 12 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274363 275136 . + . KQ414889.1 exonerate:protein2genome:local exon 274363 275136 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 274363 275136 328 + . alignment_id 12 ; Query Lalb_14618 ; Align 274363 21 78 ; Align 274441 48 426 ; Align 274873 190 147 ; Align 275029 239 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 311 Query range: 20 -> 274 Target range: 262828 -> 263602 21 : SerTyrLysSerAspValLysTyrThrLeuGluMetCysArgTrpValThrLysProI : 40 |||!:! ||| ! ! ! |||!:!|||:!!!!: !||||||:!! !||||||| SerPheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProI 262829 : AGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGA : 262886 41 : leGlyValTrpProPheValTyrSerArgThrSerLysValGluLysLeuValAlaIl : 59 |||||!.!||||||.!. ! !||| ! !|||!:!:!!|||::!:!!:!! !.! leGlyAlaTrpProLeuSerAlaSer---IleSerArgMetGluArgIleIleTrpPh 262887 : TCGGTGCATGGCCACTGTCCGCCTCG---ATCTCAAGAATGGAACGAATTATCTGGTT : 262940 60 : eValLeuLeuThrValCysPheSerAspLeuLeuPheAlaThrIleProProGlyHis : 78 !:!!|||:!!..!||||||!:!!!! !:!!|||! !.!!..!|||||| !! !! ! eLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeu 262941 : TCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTT : 262997 79 : TyrLeuIlePheValGluLysAsnValTyrValIleValLysPheLeuGlyProLeuG : 98 :!!:!!:!!.!.! !! :!!||| !!:!!:!!! :!!:!! !!||||||||||||| HisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuG 262998 : CATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCG : 263057 99 : lyPheCysIleSerSerAlaIleLysTyrLeuTyrLeuValPheLysGlyAsnLeuPh : 117 || !! .!! !.!! !|||!!.||| !!::|||:!!.!! ! .!!!!. !.! lyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIl 263058 : GTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATAT : 263114 118 : eLysArgCysLeuValHisValGluArgAspTrpLysThrValValAspGlnArgTyr : 136 .:!! !!|||:!! !||||||:!!..!|||||| ! !|||..! !..! !! eGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAsp 263115 : ACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGAT : 263171 137 : ArgArgIleMetValArgGlnSerSerValSerArgGlnLeuIleValLeuCysAlaI : 156 !:!|||||||||:!!!:!.!.:!!!.! !.!!||| ! :!! !!.!! !||||||| GlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaI 263172 : CAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGA : 263231 157 : lePheLeuTyrSerGlyGlyMetSerTyrHisThrIleMetProPheValSerLysPr : 175 |||||:!! ! !!!.!! !|||!!! ! ! !:!!! !!|||..!!!!:!! lePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnVa 263232 : TCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGT : 263288 176 : oLysMetArgGlyAsnGlnThr<-><->LeuArgProLeuIleTyrProGlyTyrAsp : 192 !! ! !||||||:!!||| |||||| !||| ! !|||! !||| ! lIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLys 263289 : GATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAA : 263345 193 : AlaPhePheAspSerGlnAlaSerProThrTyrGluIleIlePheSerMetHisCysL : 212 ! !.!!.!! !.!..!!!:!|||||| !!||||||.!!.!!:!!! !!!.! !| GluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheL 263346 : GAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTC : 263405 213 : euSerGlyPheIleLysTyrSerIleThrThrGlyAlaTyrSerLeuAlaAlaThrPh : 231 |||||||||||||| !:!!! !|||..!||||||!:!.!!:!!.!!|||..!|| euSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPh 263406 : TGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTT : 263462 232 : eValThrHisIleCysGlyGlnValGlnIleGlnIleAlaArgLeuGluAsnLeuVal : 250 |!.! !||| !|||||||||:!!.!.:!: !!!::!! !!:!! !.!.!!!||| eAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheVal 263463 : CGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTG : 263519 251 : GluSerIleGln<-><-><->LysAsnSerAspArgAsnProValAlaValIleValA : 267 .!...! !::! |||||| ! !! !!.! !:!!!.!|||||||||. AsnGlnSerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValG 263520 : AACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTG : 263579 268 : rgGluHisValGluIleLeuArg : 274 .!.!.|||:!!..!:!!|||||| luHisHisLeuArgValLeuArg 263580 : AACATCATCTGAGAGTTCTGAGG : 263602 vulgar: Lalb_14618 20 274 . KQ414889.1 262828 263602 + 311 M 28 84 G 1 0 M 133 399 G 0 6 M 72 216 G 0 9 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262829 263602 311 + . gene_id 13 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262829 263602 . + . KQ414889.1 exonerate:protein2genome:local exon 262829 263602 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 262829 263602 311 + . alignment_id 13 ; Query Lalb_14618 ; Align 262829 21 84 ; Align 262913 50 399 ; Align 263318 183 216 ; Align 263543 255 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 302 Query range: 24 -> 252 Target range: 232450 -> 233137 25 : AspValLysTyrThrLeuGluMetCysArgTrpValThrLysProIleGlyValTrpP : 44 ||| !:!!|||!:!:!!:!!:!! !|||||| !! !! !|||!!:|||!.!|||| AspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpP 232451 : GACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGC : 232508 45 : roPheValTyrSerArgThrSerLysValGluLysLeuValAlaIleValLeuLeuTh : 63 || !||| !!!..!||||||!:!!.!:!!:!!|||:!!|||! !:!!||| ! roArgVal---ThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLe 232509 : CGCGTGTT---ACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACT : 232562 64 : rValCysPheSerAspLeuLeuPheAlaThrIleProProGlyHisTyrLeuIlePhe : 82 !..!||| !||| :!!:!!! !:!!! !:!!||| ! !! !:!:!!:!:||| uThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPhe 232563 : CACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTC : 232619 83 : ValGluLysAsnValTyrValIleValLysPheLeuGlyProLeuGlyPheCysIleS : 102 ! !!!:! !!:!:!! ! ! !! :!!|||! !:!!||||||:!!.!! !! !:!:! GluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuM 232620 : GAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGA : 232679 103 : erSerAlaIleLysTyrLeuTyrLeuValPheLysGlyAsnLeuPheLysArgCysLe : 121 !.!!! !:!:!!.|||! !! !|||:!! |||!.!||| !.!! !|||:! etGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysVa 232680 : TGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGT : 232736 122 : uValHisValGluArgAspTrpLysThrValValAspGlnArgTyrArgArgIleMet : 140 !! !!!.|||:!!!:!||||||::!!.!||| ! ! ! !:!!||| !:!:||| lGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMet 232737 : GGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATG : 232793 141 : ValArgGlnSerSerValSerArgGlnLeuIleValLeuCysAlaIlePheLeuTyrS : 160 :!!!:!.!.:!!!.!:!!.!!|||..!:!! ! !:!!..!|||.!!! !:!!:!!! LeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisT 232794 : TTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACA : 232853 161 : erGlyGlyMetSerTyrHisThrIleMetProPheValSerLysProLysMetArgGl : 179 !!|||! ! ||| !!.!.! !:!!! !.!! !! !!.. !! !|| hrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGl 232854 : CCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGG : 232910 180 : yAsnGln<-><->ThrLeuArgProLeuIleTyrProGlyTyrAspAlaPhePheAsp : 196 ||||:!! :!!:!! !|||||| !! ! !! !||| !.!..!.||| yAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAsp 232911 : GAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGAC : 232967 197 : SerGlnAlaSerProThrTyrGluIleIlePheSerMetHisCysLeuSerGlyPheI : 216 !!!::! !||||||||| !!||||||!!:||| !:!:!!.|||||||||||||||| ThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheI 232968 : ACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCA : 233027 217 : leLysTyrSerIleThrThrGlyAlaTyrSerLeuAlaAlaThrPheValThrHisIl : 235 || ! !!|||:!!|||..!||||||! !.!!|||!.!|||..!.!.!.!! !||| leValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAl 233028 : TCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGC : 233084 236 : eCysGlyGlnValGlnIleGlnIleAlaArgLeuGluAsnLeuValGluSer : 252 |||||||||:!!.!.:!: !!!::!!!:!|||!!::!!||||||!!::!! aCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAla 233085 : GTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCG : 233137 vulgar: Lalb_14618 24 252 . KQ414889.1 232450 233137 + 302 M 22 66 G 1 0 M 134 402 G 0 6 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232451 233137 302 + . gene_id 14 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232451 233137 . + . KQ414889.1 exonerate:protein2genome:local exon 232451 233137 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 232451 233137 302 + . alignment_id 14 ; Query Lalb_14618 ; Align 232451 25 66 ; Align 232517 48 402 ; Align 232925 182 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 294 Query range: 17 -> 274 Target range: 226900 -> 227680 18 : ThrAsnProSerTyrLysSerAspValLysTyrThrLeuGluMetCysArgTrpValT : 37 |||.!. !..!|||:!!..! !!:!!!!. !:!:!!:!!:!! !||||||:!! ThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuL 226901 : ACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGT : 226958 38 : hrLysProIleGlyValTrpProPheValTyrSerArgThrSerLysValGluLysLe : 56 !||||||:!!|||:!!|||||| !! !!!:!!:!|||::!:!!! !!:!! euLysProLeuGlyIleTrpPro---SerSerArgLysSerSerArgIleGlyArgCy 226959 : TGAAACCACTCGGTATCTGGCCG---TCGTCGCGCAAAAGCTCTCGAATAGGAAGATG : 227012 57 : uValAlaIleValLeuLeuThrValCysPheSerAspLeuLeuPheAlaThrIlePro : 75 ! !!:!! :!!:!! ! !:!!|||!:!:!! :!! !|||! ! !:!! !! sPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSer 227013 : TTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCG : 227069 76 : ProGlyHisTyrLeuIlePheValGluLysAsnValTyrValIleValLysPheLeuG : 95 !||| |||:!!:!!.!.! !! !|||..!!.!||| !! :!!|||.!.:!!| SerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleG 227070 : AGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCG : 227129 96 : lyProLeuGlyPheCysIleSerSerAlaIleLysTyrLeuTyrLeuValPheLysGl : 114 |||||:!!..!|||! ! ! !||| !:!!||||||! ! |||..!||| ! ! lyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGl 227130 : GTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGA : 227186 115 : yAsnLeuPheLysArgCysLeuValHisValGluArgAspTrpLysThrValValAsp : 133 !:!! !.!! ..!|||:!!! !!..:!!:!! !!|||||||||!.!:!! ! !! uAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyr 227187 : GGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATAC : 227243 134 : GlnArgTyrArgArgIleMetValArgGlnSerSerValSerArgGlnLeuIleValL : 153 ! !..! !!|||!.!:!:||||||! ! ! :!!! ! !.!!|||:!!||||||..!: LeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrI 227244 : CTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTA : 227303 154 : euCysAlaIlePheLeuTyrSerGlyGlyMetSerTyrHisThrIleMetProPhe<- : 172 !!|||.!!.!!|||:!!!:!|||... ::: ::::::! !:!!:!:|||.!! leCysThrPhePheValPheSerSerPheValPhePheTyrIleValValProIleAs 227304 : TTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAA : 227360 173 : ><->ValSerLysProLysMetArgGlyAsnGlnThrLeuArgProLeuIleTyrPro : 189 ! !||| !!! ! ! !||||||!!.!:!! !! !! !:!! !:!||| nAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPhePro 227361 : CGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCG : 227417 190 : GlyTyrAspAlaPhePheAspSerGlnAlaSerProThrTyrGluIleIlePheSerM : 209 ! ! !.!! !||| !!:: !|||||| ! !!||||||.!!||||||: PheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerV 227418 : TTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGG : 227477 210 : etHisCysLeuSerGlyPheIleLysTyrSerIleThrThrGlyAlaTyrSerLeuAl : 228 !:!!.! !:!!!!!|||.!!:!: !:!!.!!:!!|||:!!!.!|||! !|||:!!|| alGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAl 227478 : TACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGC : 227534 229 : aAlaThrPheValThrHisIleCysGlyGlnValGlnIleGlnIleAlaArgLeuGlu : 247 |||| !.!!!.!..!||| !|||||||||:!!:!!:!: !:!::!! !!|||! ! aAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGly 227535 : AGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGA : 227591 248 : AsnLeuValGluSerIleGlnLysAsnSerAspArg<-><->AsnProValAlaValI : 265 :!!|||:!!!!:.!!! ! ! ! ! ||| ! ! ! :!! !:!!||| !| HisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerI 227592 : CATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCA : 227651 266 : leValArgGluHisValGluIleLeuArg : 274 |||||! !.!.||||||..!||||||!:! leValThrHisHisValArgIleLeuLys 227652 : TCGTCACTCACCACGTTCGAATATTGAAG : 227680 vulgar: Lalb_14618 17 274 . KQ414889.1 226900 227680 + 294 M 27 81 G 1 0 M 126 378 G 0 6 M 88 264 G 0 6 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226901 227680 294 + . gene_id 15 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226901 227680 . + . KQ414889.1 exonerate:protein2genome:local exon 226901 227680 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226901 227680 294 + . alignment_id 15 ; Query Lalb_14618 ; Align 226901 18 81 ; Align 226982 46 378 ; Align 227366 172 264 ; Align 227636 260 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 293 Query range: 20 -> 274 Target range: 256631 -> 257405 21 : SerTyrLysSerAspValLysTyrThrLeuGluMetCysArgTrpValThrLysProI : 40 !:!!:!|||||| !! ! ! |||!:!|||:!!:!! !|||||| !! !||||||| AsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 256632 : AATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTA : 256689 41 : leGlyValTrpProPheValTyrSerArgThrSerLysValGluLysLeuValAlaIl : 59 |||||!.!|||||| !! ||| !|||!!!! :!!|||::! !|||:!!|| leGlyAlaTrpPro---ProSerSerSerThrThrThrLeuGluArgAsnValSerIl 256690 : TAGGCGCATGGCCA---CCCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGAT : 256743 60 : eValLeuLeuThrValCysPheSerAspLeuLeuPheAlaThrIleProProGlyHis : 78 ||||||| !! !||||||!:!.!!..!:!!||||||.!! !|||||| ! !! ! eValLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIleProCysLeuLeu 256744 : CGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTC : 256800 79 : TyrLeuIlePheValGluLysAsnValTyrValIleValLysPheLeuGlyProLeuG : 98 :!!:!!.!!.!!! !!!: ! !:! !!|||::: |||||| ...||||||:!!. HisValPheLeuAspAspAspSerPheTyrMetLysValLysAsnPheGlyProMetS 256801 : CATGTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGA : 256860 99 : lyPheCysIleSerSerAlaIleLysTyrLeuTyrLeuValPheLysGlyAsnLeuPh : 117 !! !!! |||! !|||..! !!!.||| !! |||:!!!!.:!!|||!!. !.! erHisTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIl 256861 : GCCATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACAT : 256917 118 : eLysArgCysLeuValHisValGluArgAspTrpLysThrValValAspGlnArgTyr : 136 .::: !|||:!!! !|||:!!|||! !||||||!:!! !||| ! :!!!:! !! eArgTyrCysValGluHisIleGluThrAspTrpArgMetValArgArgGluLysAsp 256918 : ACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGAT : 256974 137 : ArgArgIleMetValArgGlnSerSerValSerArgGlnLeuIleValLeuCysAlaI : 156 !:!!:!:!:|||:!!!:!.!.:!!!!! !!.!!||| ! :!! !..!!!!|||||| GlnGlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaA 256975 : CAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAG : 257034 157 : lePheLeuTyrSerGlyGlyMetSerTyrHisThrIleMetProPheValSerLysPr : 175 !.!!:!! ! |||||| ... ::: ..! ! !!.!. !!!!:!! laIleMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAsnThrGluIl 257035 : CTATCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGAT : 257091 176 : oLysMetArgGlyAsnGlnThr<-><->LeuArgProLeuIleTyrProGlyTyrAsp : 192 !! !||||||:!!||| :!!||| !||| ! ! !!! !||| ! eIleHisValGlyAsnGluThrThrIleValArgValLeuProValThrValTyrLys 257092 : AATTCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAG : 257148 193 : AlaPhePheAspSerGlnAlaSerProThrTyrGluIleIlePheSerMetHisCysL : 212 !.!.!!.:!! !.!. !||||||||| !!||||||:!: !!! !|||!!. !! LysLeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheMetGlnThrT 257149 : AAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTT : 257208 213 : euSerGlyPheIleLysTyrSerIleThrThrGlyAlaTyrSerLeuAlaAlaThrPh : 231 !|||..!.!!||| ! !!!!! !|||..!.!! !!:!||||||||||||..!|| rpSerSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAlaAlaValPh 257209 : GGTCGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTT : 257265 232 : eValThrHisIleCysGlyGlnValGlnIleGlnIleAlaArgLeuGluAsnLeuVal : 250 |!.!|||||| ! !||||||:!! :!:! !!::!! !!:!! !.!.!!!||| eAlaThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGluPheVal 257266 : TGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTG : 257322 251 : GluSerIleGlnLysAsnSerAspArgAsnPro<-><-><->ValAlaValIleValA : 267 .!...! ::!!!....... ||| :!!!.!|||||||||. AsnGluSerArgAsnArgGluLysThrPheProPheLysGlnIleGlyValIleValG 257323 : AATGAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGG : 257382 268 : rgGluHisValGluIleLeuArg : 274 .!.!.|||:!!..!:!:|||||| luHisHisLeuArgValLeuArg 257383 : AGCATCATTTAAGAGTGCTGAGG : 257405 vulgar: Lalb_14618 20 274 . KQ414889.1 256631 257405 + 293 M 24 72 G 1 0 M 137 411 G 0 6 M 79 237 G 0 9 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256632 257405 293 + . gene_id 16 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256632 257405 . + . KQ414889.1 exonerate:protein2genome:local exon 256632 257405 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 256632 257405 293 + . alignment_id 16 ; Query Lalb_14618 ; Align 256632 21 72 ; Align 256704 46 411 ; Align 257121 183 237 ; Align 257367 262 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 227 Query range: 14 -> 249 Target range: 194132 -> 194831 15 : GlyHisPheThrAsnProSerTyrLysSerAspValLysTyrThrLeuGluMetCysA : 34 ...:!!!:! !||| !!:!||||||! !|||..!:!!|||.!!:!!..!:!:...! SerAsnTyrArgAsnValAsnTyrLysLeuAspThrGluTyrAlaValArgValAlaL 194133 : tcgAATTACCGCAACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAA : 194190 35 : rgTrpValThrLysProIleGlyValTrpProPheValTyrSerArgThrSerLysVa : 53 :! !:!! !! !|||||||||:!!|||||| !!!..! !||| ysAlaLeuLeuThrProIleGlyIleTrpPro---------ArgGluAspSerLeuAr 194191 : AAGCGCTTCTAACACCGATCGGTATCTGGCCA---------AGGGAGGATTCTCTTCG : 194238 54 : lGluLysLeuValAlaIleValLeuLeuThrValCysPheSerAspLeuLeuPheAla : 72 !!!:!:!:!! ! !.!!!.!! ! ! !||| !|||:!! :!!! !||| ! gAspArgValArgLeuPheAlaGlnThrGlyValValPheAlaLeuMetCysPheLeu 194239 : CGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTTCGCTTTGATGTGCTTTCTA : 194295 73 : ThrIleProProGlyHisTyrLeuIlePheValGluLysAsnValTyrValIleValL : 92 !:!!|||! !! ! !||| ! !|||! ! :!!:!!:!! ! !:!!| LeuValProHisValIleTyrThrTyrPheAspCysGluAspLeuThrArgTyrMetL 194296 : CTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAGGATCTGACGAGGTACATGA : 194355 93 : ysPheLeuGlyProLeuGlyPheCysIleSerSerAlaIleLysTyrLeuTyrLeuVa : 111 || ! :!!!.! !!! !! !||| !!:!:! !:!! !||||||!:!! ! :!!:! ysValIleAlaAlaGlnValPheSerLeuLeuAlaIleIleLysPheTrpThrMetIl 194356 : AGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGAT : 194412 112 : lPheLysGlyAsnLeuPheLysArgCysLeuValHisValGluArgAspTrpLysThr : 130 ! ! !!. !!!!. !.!!!:! !||||||:!!.!.:!!|||! !.!.!::!:! ! eValAsnArgLysGluIleArgPheCysLeuLeuGluMetGluThrGlnTyrArgAsp 194413 : CGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGAC : 194469 131 : ValValAspGlnArgTyrArgArgIleMetValArgGlnSerSerValSerArgGlnL : 150 |||! ! !:!!..! !!|||!:!:!:|||..!!.! :!!!.!:!!.!!||| ! ValGluCysGluGluAspArgGlnValMetThrAsnCysAlaLysIleGlyArgPheP 194470 : GTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTT : 194529 151 : euIleValLeuCysAlaIlePheLeuTyrSerGlyGlyMetSerTyrHisThrIleMe : 169 !!! !..!|||! ! ! !.!!! !|||.!!|||!.!:!! !!||||||! !|||:! heThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLe 194530 : TTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCT : 194586 170 : tProPheValSerLysProLysMetArg<->GlyAsnGlnThrLeuArgProLeuIle : 187 :|||.!.:!!|||:!! !! :!:!:! ! !|||...|||! !! !|||||| ! uProLeuMetSerGluArgIleValLysGluAspAsnSerThrGlnIleProLeuPro 194587 : ACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAACAGTACTCAGATACCTCTGCCA : 194643 188 : TyrProGlyTyrAspAlaPhePheAspSerGlnAlaSerProThrTyrGluIleIleP : 207 ||| !.!! !! !!!.!||||||! ! !:!!! !||||||! !|||||||||! !| TyrLeuSerAsnTyrValPhePheAlaIleGluAspSerProIleTyrGluIleThrP 194644 : TATTTGAGCAACTATGTTTTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACAT : 194703 208 : heSerMetHisCysLeuSerGlyPheIleLysTyrSerIleThrThrGlyAlaTyrSe : 226 || ! !!!. |||! !.!! !|||! !! |||! !.! !||| !||||| heValSerGlnIleLeuIleSerSerIleIleLeuSerThrAsnCysGlyIleTyrSe 194704 : TCGTCTCGCAGATACTGATTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAG : 194760 227 : rLeuAlaAlaThrPheValThrHisIleCysGlyGlnValGlnIleGlnIleAlaArg : 245 ||||!.!||||||.!!:!!! !||| !|||||| ! !!:!!:!: ! ! !||| rLeuValAlaThrIleIleMetHisCysCysGlyLeuPheGluValThrSerArgArg 194761 : TTTGGTCGCTACTATTATTATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGG : 194817 246 : LeuGluAsnLeu : 249 :!!|||!.!:!! MetGluThrIle 194818 : ATGGAGACTATT : 194831 vulgar: Lalb_14618 14 249 . KQ414889.1 194132 194831 + 227 M 30 90 G 3 0 M 131 393 G 0 3 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194133 194831 227 + . gene_id 17 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194133 194831 . + . KQ414889.1 exonerate:protein2genome:local exon 194133 194831 . + . insertions 3 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 194133 194831 227 + . alignment_id 17 ; Query Lalb_14618 ; Align 194133 15 90 ; Align 194223 48 393 ; Align 194619 179 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 227 Query range: 334 -> 387 Target range: 301877 -> 302036 335 : CysSerLysIleGlyProAlaAlaTyrGluIleAspTrpTyrAsnLeuProTyrLysL : 354 ||||||:!!|||||| !!|||:!!||||||||||||||||||||||||||| |||! CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysA 301878 : TGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGA : 301935 355 : ysAlaHisAspLeuIleLeuLeuSerValValSerAsnTyrProProLysLeuThrAl : 373 :!|||:!!|||||||||||||||||||||:!!|||.!.|||||||||||||||||||| rgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAl 301936 : GAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGC : 301992 374 : aGlyLysIlePheThrLeuSerLeuAsnThrPheSerSerVal : 387 ||||||||||.!! !||||||||||||||||||||||||||| aGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301993 : AGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: Lalb_14618 334 387 . KQ414889.1 301877 302036 + 227 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301878 302036 227 + . gene_id 18 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301878 302036 227 + . alignment_id 18 ; Query Lalb_14618 ; Align 301878 335 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 334 -> 387 Target range: 297644 -> 297803 335 : CysSerLysIleGlyProAlaAlaTyrGluIleAspTrpTyrAsnLeuProTyrLysL : 354 ..!..!|||.!!||| !|||||||||.!.|||!!:||||||||||||||| !!.! AlaGluLysPheGlyAsnAlaAlaTyrAsnIleGluTrpTyrAsnLeuProProAsnA 297645 : GCTGAAAAATTCGGCAATGCAGCTTATAACATCGAATGGTACAACTTACCGCCAAACA : 297702 355 : ysAlaHisAspLeuIleLeuLeuSerValValSerAsnTyrProProLysLeuThrAl : 373 :!|||! !||||||:!:|||:!!! !! !:!!:!!!!.!:!||||||!:!||||||.. rgAlaLeuAspLeuValLeuMetIleGlyIleAlaLysPheProProArgLeuThrGl 297703 : GGGCTCTCGATCTGGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCACAgg : 297759 374 : aGlyLysIlePheThrLeuSerLeuAsnThrPheSerSerVal : 387 .|||||||||||| :::|||:!!||||||||||||:!!||| yGlyLysIlePheAspIleSerIleAsnThrPheSerAlaVal 297760 : tggaaaaatattcgatatatCGATAAACACGTTCAGTGCCGTA : 297803 vulgar: Lalb_14618 334 387 . KQ414889.1 297644 297803 + 165 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297645 297803 165 + . gene_id 19 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297645 297803 . + . KQ414889.1 exonerate:protein2genome:local exon 297645 297803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297645 297803 165 + . alignment_id 19 ; Query Lalb_14618 ; Align 297645 335 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 335 -> 390 Target range: 292395 -> 292560 336 : SerLysIleGlyProAlaAlaTyrGluIleAspTrpTyrAsnLeuProTyrLysLysA : 355 |||:!!|||!.!! !|||:!!|||!!:! !!!:||||||||||||||| ::!|||| SerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgArgLysA 292396 : AGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGG : 292453 356 : laHisAspLeuIleLeuLeuSerValValSerAsnTyrProProLysLeuThrAlaGl : 374 ||!.!|||:!!:!!|||:!! !!.!:!!!!!!!.:!!||| !|||||||||||||| laArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuThrAlaGl 292454 : CTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGG : 292510 375 : yLysIlePheThrLeuSerLeuAsnThrPheSerSerValGlyAspAla : 390 ||||||||||..!||||||||||||||||||.!!:!!||| !!!!::!! yLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSer 292511 : CAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCA : 292560 vulgar: Lalb_14618 335 390 . KQ414889.1 292395 292560 + 164 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292396 292560 164 + . gene_id 20 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292396 292560 . + . KQ414889.1 exonerate:protein2genome:local exon 292396 292560 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292396 292560 164 + . alignment_id 20 ; Query Lalb_14618 ; Align 292396 336 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 322 -> 394 Target range: 280240 -> 280456 323 : GluThrCysArgLysPheProSerHisLeuArgLeuCysSerLysIleGlyProAlaA : 342 |||! !! ..!! !||| !||| !:!! !! !|||! !|||:!!||| !:!!. GluIleSerGluThrPheIleSerPheValSer***CysLeuLysValGlyValSerT 280241 : GAGATTTCAGAGACATTTATAAGCTTCGTTTCATAGTGCTTAAAAGTCGGCGTGTCAA : 280298 343 : laTyrGluIleAspTrpTyrAsnLeuProTyrLysLysAlaHisAspLeuIleLeuLe : 361 !!||| !||||||||||||..!|||||| |||||||||!!.! !|||||||||:! hrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIl 280299 : CTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGAT : 280355 362 : uSerValValSerAsnTyrProProLysLeuThrAlaGlyLysIlePheThrLeuSer : 380 !! !!.!|||||||||! ! !! !|||||||||||||||||||||.!! !|||||| ePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSer 280356 : ATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCT : 280412 381 : LeuAsnThrPheSerSerValGlyAspAlaValIleGlyTyr : 394 |||!:!!:!|||!!!||||||.!! ! ! !:!!..!||| LeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 280413 : TTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 280456 vulgar: Lalb_14618 322 394 . KQ414889.1 280240 280456 + 159 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280241 280456 159 + . gene_id 21 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280241 280456 . + . KQ414889.1 exonerate:protein2genome:local exon 280241 280456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280241 280456 159 + . alignment_id 21 ; Query Lalb_14618 ; Align 280241 323 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 334 -> 394 Target range: 287063 -> 287243 335 : CysSerLysIleGlyProAlaAlaTyrGluIleAspTrpTyrAsnLeuProTyrLysL : 354 |||! !|||:!!||| !:!!.!!||| !||||||||||||..!|||||| |||! CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysT 287064 : tGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAA : 287121 355 : ysAlaHisAspLeuIleLeuLeuSerValValSerAsnTyrProProLysLeuThrAl : 373 !|||!!.! !|||||||||:!!! !!.!|||||||||! ! !! !||||||||||| hrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 287122 : CAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 287178 374 : aGlyLysIlePheThrLeuSerLeuAsnThrPheSerSerValGlyAspAlaValIle : 392 ||||||||||.!! !|||||||||!:!!:!|||!!!||||||.!! ! ! !:!! aGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeu 287179 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTA : 287235 393 : GlyTyr : 394 ..!||| SerTyr 287236 : TCCTAT : 287243 vulgar: Lalb_14618 334 394 . KQ414889.1 287063 287243 + 148 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287064 287243 148 + . gene_id 22 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287064 287243 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287243 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287064 287243 148 + . alignment_id 22 ; Query Lalb_14618 ; Align 287064 335 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 322 -> 389 Target range: 238592 -> 238793 323 : GluThrCysArgLysPheProSerHisLeuArgLeuCysSerLysIleGlyProAlaA : 342 .!.||| |||! !|||.!!:!!! ! !! !|||! !|||:!!||| !!.!! HisThrThrArgThrAsnProGlyAsnCys***GlnCysLeuLysValGlyGluValV 238593 : CATACAACAAGGACTAATCCAGGAAATTGTTAACAGTGCTTGAAAGTTGGTGAAGTGG : 238650 343 : laTyrGluIleAspTrpTyrAsnLeuProTyrLysLysAlaHisAspLeuIleLeuLe : 361 .!||| !! !||||||||| !!|||||| ! !:!!:! !! !||||||||||||:! alTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIl 238651 : TTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGAT : 238707 362 : uSerValValSerAsnTyrProProLysLeuThrAlaGlyLysIlePheThrLeuSer : 380 !! ! ! !|||||| ! !|||:!!||||||||||||:!!!!. !:!!||| eIleLysArgSerAsnValValValLysValThrAlaGlyLysValLeuHisMetSer 238708 : CATTAAACGATCGAACGTGGTCGTTAAAGTCACCGCTGGAAAAGTATTACATATGTCG : 238764 381 : LeuAsnThrPheSerSerValGlyAsp : 389 ||| !!||||||.!!..!|||.!!!!: LeuTyrThrPheGlyAspValSerGlu 238765 : CTTTACACGTTCGGCGATGTAAGTGAA : 238793 vulgar: Lalb_14618 322 389 . KQ414889.1 238592 238793 + 132 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238593 238793 132 + . gene_id 23 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238593 238793 . + . KQ414889.1 exonerate:protein2genome:local exon 238593 238793 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238593 238793 132 + . alignment_id 23 ; Query Lalb_14618 ; Align 238593 323 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 334 -> 389 Target range: 254274 -> 254439 335 : CysSerLysIleGlyProAlaAlaTyrGluIleAspTrpTyrAsnLeuProTyrLysL : 354 |||! !|||:!!||| !!.!!.!||| !! !||||||||| !!|||||| ! !:!! CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgA 254275 : TGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAA : 254332 355 : ysAlaHisAspLeuIleLeuLeuSerValValSerAsnTyrProProLysLeuThrAl : 373 :! !! !||||||||||||:!!! !..! !|||||| ! !:!!:!!||||| rgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAl 254333 : GAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGc : 254389 374 : aGlyLysIlePheThrLeuSerLeuAsnThrPheSerSerValGlyAsp : 389 ||||||||||||| :::|||||| !!||||||.!!..!|||.!!!!: aGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGlu 254390 : tggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAA : 254439 vulgar: Lalb_14618 334 389 . KQ414889.1 254274 254439 + 132 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254275 254439 132 + . gene_id 24 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254275 254439 . + . KQ414889.1 exonerate:protein2genome:local exon 254275 254439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254275 254439 132 + . alignment_id 24 ; Query Lalb_14618 ; Align 254275 335 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 322 -> 389 Target range: 244622 -> 244823 323 : GluThrCysArgLysPheProSerHisLeuArgLeuCysSerLysIleGlyProAlaA : 342 .!.||| |||! !|||.!!:!!! ! !! !|||! !|||:!!||| !!.!! HisThrThrArgThrAsnProGlyAsnCys***GlnCysLeuLysValGlyGluValV 244623 : CATACAACAAGGACTAATCCAGGAAATTGTTAACAGTGCTTGAAAGTTGGTGAAGTGG : 244680 343 : laTyrGluIleAspTrpTyrAsnLeuProTyrLysLysAlaHisAspLeuIleLeuLe : 361 .!||| !! !||||||||| !!|||||| ! !:!!:! !! !||||||||||||:! alTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIl 244681 : TTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGAT : 244737 362 : uSerValValSerAsnTyrProProLysLeuThrAlaGlyLysIlePheThrLeuSer : 380 !! ! ! !|||||| ! !:!!:!!||||||||||||:!!!!. !:!!||| eIleLysArgSerAsnMetValValGluIleThrAlaGlyLysValLeuHisMetSer 244738 : CATTAAACGATCGAACATGGTCGTTGAAATCACCGCTGGAAAAGTATTACATATGTCG : 244794 381 : LeuAsnThrPheSerSerValGlyAsp : 389 ||| !!||||||.!!..!|||.!!!!: LeuTyrThrPheGlyAspValSerGlu 244795 : CTTTACACGTTCGGCGATGTAAGTGAA : 244823 vulgar: Lalb_14618 322 389 . KQ414889.1 244622 244823 + 129 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244623 244823 129 + . gene_id 25 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244623 244823 . + . KQ414889.1 exonerate:protein2genome:local exon 244623 244823 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244623 244823 129 + . alignment_id 25 ; Query Lalb_14618 ; Align 244623 323 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 334 -> 390 Target range: 264726 -> 264894 335 : CysSerLysIleGlyProAlaAlaTyrGluIleAspTrpTyrAsnLeuProTyrLysL : 354 |||!.!|||:!!||| !!.!!.!||| ! :!!|||||| !!|||||||||||| CysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrLysA 264727 : TGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACAAAG : 264784 355 : ysAlaHisAspLeuIleLeuLeuSerValValSerAsnTyrProProLysLeuThrAl : 373 ! !! !||||||||||||:!!! !:!! !|||!:! ! !|||!!!||||| spIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheThrAl 264785 : ATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCACCGC : 264841 374 : aGlyLysIlePheThrLeuSerLeuAsnThrPheSerSerValGlyAspAla : 390 ||||||||||.!! !:!!|||:!! !!|||||||||..!||| !!..!||| aGlyLysIleLeuHisMetSerMetTyrThrPheSerAspValArgSerAla 264842 : TGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTACGTTCCGCT : 264894 vulgar: Lalb_14618 334 390 . KQ414889.1 264726 264894 + 128 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264727 264894 128 + . gene_id 26 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264727 264894 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264894 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264727 264894 128 + . alignment_id 26 ; Query Lalb_14618 ; Align 264727 335 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 337 -> 387 Target range: 206251 -> 206401 338 : IleGlyProAlaAlaTyrGluIleAspTrpTyrAsnLeuProTyrLysLysAlaHisA : 357 :!:||| !.!!:!!! ! !:!::!!||||||..!|||||| !!!:! ! |||!.!. ValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgS 206252 : GTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCT : 206309 358 : spLeuIleLeuLeuSerValValSerAsnTyrProProLysLeuThrAlaGlyLysIl : 376 .!:!!||||||:!!! !!.!:!!|||||||||||| !||||||||||||||||||!! erMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMe 206310 : CTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAAT : 206366 377 : ePheThrLeuSerLeuAsnThrPheSerSerVal : 387 :||| !:!!|||||| !!:!|||!!!..!||| tPheGluMetSerLeuAlaSerPheThrAspVal 206367 : GTTCGAAATGTCTTTAGCTAGTTTCACCGATGTA : 206401 vulgar: Lalb_14618 337 387 . KQ414889.1 206251 206401 + 127 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206252 206401 127 + . gene_id 27 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206252 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206252 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206252 206401 127 + . alignment_id 27 ; Query Lalb_14618 ; Align 206252 338 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 334 -> 387 Target range: 258465 -> 258624 335 : CysSerLysIleGlyProAlaAlaTyrGluIleAspTrpTyrAsnLeuProTyrLysL : 354 |||!.!|||:!!||| !!.!!.!||| !! !||||||||| !!|||||| !!|||! CysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspLysA 258466 : TGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAAA : 258523 355 : ysAlaHisAspLeuIleLeuLeuSerValValSerAsnTyrProProLysLeuThrAl : 373 :! !! !||||||||||||:!!! !!.! !|||!:! ! !:!!:!!||||| rgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleThrAl 258524 : GAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGC : 258580 374 : aGlyLysIlePheThrLeuSerLeuAsnThrPheSerSerVal : 387 |||||||...||| ::!|||:!! !!|||||||||..!||| aGlyLysPhePheHisMetSerIleTyrThrPheSerAspVal 258581 : GggaaaattctttcacatGTCCATTTACACATTCAGCGATGTG : 258624 vulgar: Lalb_14618 334 387 . KQ414889.1 258465 258624 + 125 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258466 258624 125 + . gene_id 28 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 258466 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258466 258624 125 + . alignment_id 28 ; Query Lalb_14618 ; Align 258466 335 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 334 -> 387 Target range: 230247 -> 230406 335 : CysSerLysIleGlyProAlaAlaTyrGluIleAspTrpTyrAsnLeuProTyrLysL : 354 |||!!!|||:!!||| ! !:!!||| !|||!!:||||||...||| !! !!.| CysArgLysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyAsnL 230248 : TGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAAACA : 230305 355 : ysAlaHisAspLeuIleLeuLeuSerValValSerAsnTyrProProLysLeuThrAl : 373 || !! ! !! !||||||:!!! !!.!:!!||||||! ! !! !!|||!!!||||| ysLysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheThrAl 230306 : AGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTACAGC : 230362 374 : aGlyLysIlePheThrLeuSerLeuAsnThrPheSerSerVal : 387 ||||!!.!!: !! !||||||:!!||||||||||||..!||| aGlyAsnMetValGluLeuSerValAsnThrPheSerAspVal 230363 : AGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGACGTA : 230406 vulgar: Lalb_14618 334 387 . KQ414889.1 230247 230406 + 115 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230248 230406 115 + . gene_id 29 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230248 230406 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230406 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230248 230406 115 + . alignment_id 29 ; Query Lalb_14618 ; Align 230248 335 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 329 -> 387 Target range: 234973 -> 235147 330 : SerHisLeuArgLeuCysSerLysIleGlyProAlaAlaTyrGluIleAspTrpTyrA : 349 |||:!! !!:!! !|||!!!|||:!!||| ! !!.!||| !! !!!:||||||. SerAsnThrGlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrA 234974 : TCGAACACTCAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACC : 235031 350 : snLeuProTyrLysLysAlaHisAspLeuIleLeuLeuSerValValSerAsnTyrPr : 368 ..||||||:!!|||! |||! !! !|||:!!:!!:!!! ! ! !|||!:! rgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetVa 235032 : GGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGT : 235088 369 : oProLysLeuThrAlaGlyLysIlePheThrLeuSerLeuAsnThrPheSerSerVal : 387 ! !|||:!!||||||||||||.!!.!. !:!!|||:!! ||||||.!!..!||| lIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235089 : GATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235145 vulgar: Lalb_14618 329 387 . KQ414889.1 234973 235147 + 115 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234974 235147 115 + . gene_id 30 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234974 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234974 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234974 235147 115 + . alignment_id 30 ; Query Lalb_14618 ; Align 234974 330 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 330 -> 387 Target range: 277542 -> 277713 331 : HisLeuArgLeuCysSerLysIleGlyProAlaAlaTyrGluIleAspTrpTyrAsnL : 350 :!!!!!|||! !|||!.!|||:!!||| !!.!!.!||| !! :!!|||||| !!| AsnPheArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrL 277543 : AATTTCCGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATT : 277600 351 : euProTyrLysLysAlaHisAspLeuIleLeuLeuSerValValSerAsnTyrProPr : 369 ||||| !!||| ! !! !:!!|||:!!|||:!!! ! ! !|||!:! euProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIl 277601 : TACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaat : 277657 370 : oLysLeuThrAlaGlyLysIlePheThrLeuSerLeuAsnThrPheSerSerVal : 387 |||:::||||||||||||:::... :::|||:!! !!||||||.!!..!||| eLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspVal 277658 : taaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTA : 277713 vulgar: Lalb_14618 330 387 . KQ414889.1 277542 277713 + 108 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277543 277713 108 + . gene_id 31 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277543 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277543 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277543 277713 108 + . alignment_id 31 ; Query Lalb_14618 ; Align 277543 331 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 271 -> 308 Target range: 304930 -> 305041 272 : IleLeuArgPheSerLysAsnValGluGluAlaLeuArgGluIleCysLeuThrGluI : 291 |||! !||||||||| !! |||:!! !!.!|||!:!|||:!!|||!!! !|||. IleTyrArgPheSerAlaIleValGlnThrValLeuGlnGluValCysPheLeuGluP 304931 : ATTTATAGATTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTTCTTGGAAT : 304988 292 : leValGluSerThrPheIleLeuCysValLeuGluTyrTyrCysLeuValVal : 308 !!:!!! ||||||!!.:!::!!|||:!!|||||||||||||||:!!..!||| heIleGlySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysIleThrVal 304989 : TCATTGGTTCTACCTTACTGATATGTCTACTTGAATACTACTGTATAACGGTG : 305041 vulgar: Lalb_14618 271 308 . KQ414889.1 304930 305041 + 107 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304931 305041 107 + . gene_id 32 ; sequence Lalb_14618 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304931 305041 . + . KQ414889.1 exonerate:protein2genome:local exon 304931 305041 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304931 305041 107 + . alignment_id 32 ; Query Lalb_14618 ; Align 304931 272 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 660 Query range: 3 -> 268 Target range: 289681 -> 290482 4 : ArgSerSerAsnGlnValLysSerPheAsnAspAspTyrGluAsnAspLeuAsnTyrT : 23 ||||||! !!:!...! !::: !!! |||||| !||||||!..|||:!!..!|||| ArgSerPheSerSerAspArgProSerAsnAspArgTyrGluThrAspIleArgTyrT 289682 : CGATCGTTCAGCAGCGATCGTCCGTCGAACGATCGTTACGAAACGGACATACGTTACA : 289739 24 : hrLeuGlyMetCysArgLeuLeuLeuLysProLeuGlyValTrpThrPheIleTyrAs : 42 ||!!!! !:!:|||!.!! !:!!|||||||||:!!|||:!!!:: !!|||:!!!:!.. hrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrProPheValPheSe 289740 : CGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCTTTAG : 289796 43 : pArgGlySerArgLeuGluArgValLeuSerIleProLeuMetLeuIleCysPheSer : 61 !|||!.!||||||! !||||||..! !|||:!: !|||!!:|||:!!|||! !||| rArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLeuValCysCysSer 289797 : CCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCG : 289853 62 : SerLeuPhePheIleIleLeuProSerValTyrAsnMetLeuPheMetGluGluAspL : 81 ! !||| |||||||||:!!|||! ! !:!!:!!:!:||||||! !!:.!.|||: IleLeuGlnPheIleIleValProPheSerHisHisValLeuPheSerAspAsnAspM 289854 : ATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAACGACA : 289913 82 : euGlnAsnIleValLysLeuLeuGlyProIleSerPheCysMetPheSerThrIleLy : 100 !!.!.!...!!|||||| !|||||||||:!:!!!||||||:!! !!!! !.!!|| etAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuThrThrPhePheLy 289914 : TGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCTTCAA : 289970 101 : sTyrCysLeuLeuGlyMetLysGlyAsnThrLeuGlyGlnCysIleLeuHisLeuGlu : 119 |||||||! !!!!.!!|||||||||:::.!!:!!|||!::|||:!: !|||:!!||| sTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysValLysHisIleGlu 289971 : GTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACATCGAG : 290027 120 : ArgAspTrpLysMetValGlnAspProAspHisArgAlaIleMetLeuLysGlnAlaS : 139 |||||||||||||||:!!!::||| !|||||||||!.!|||||||||!:! ! !.!! ArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMetLeuArgTyrValT 290028 : AGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATACGTGA : 290087 140 : erThrSerArgPheLeuIleThrIleCysValGlyPheLeuTyrSerGlyGlyMetSe : 158 !!! !|||||| !||||||! !:!:|||!.! !|||||||||! !||||||:!!|| hrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyLeuSe 290088 : CGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTCTGTC : 290144 159 : rTyrHisThrValMetGlnPheLeuSerLysAspArgThrAsnThrAsnValThrLeu : 177 ||||:!!||||||!!:! !!!.!!!|||||| ! !!!..!||| !|||||||||:!! rTyrAsnThrValIleProLeuPheSerLysLysSerValAsnGlyAsnValThrIle 290145 : TTATAACACTGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGGTAACGTGACTATC : 290201 178 : ArgProIleThrTyrProCysPhe<->AsnPheLeuAspThrGlnSerSerProThrT : 196 ||||||:!!||||||||| !!!:! .!.|||!!!|||..!|||!.!||||||.!!| ArgProLeuThrTyrProGlyTyrGluGluPhePheAspValGlnLysSerProAlaT 290202 : AGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGT : 290261 197 : yrGluLeuValPhePheThrHisCysValThrAlaMetValMetGlnThrIleThrTh : 215 |||||:!!||||||! !! !||||||||| !!.!|||:!!! ! !!.!||||||! yrGluIleValPheCysMetHisCysValTyrValMetIleThrAlaAsnIleThrMe 290262 : ACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACATCACAAT : 290318 216 : rAlaGlyTyrSerLeuAlaAlaThrPheValThrHisMetCysGlyGlnIleGlnIle : 234 !|||!.!|||||||||.!!.!!! !|||!.!||||||! ||||||||||||:!!||| tAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGlnIleLysIle 290319 : GGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATA : 290375 235 : GlnIleSerArgLeuAspAsnLeuIleGlyGluHisArg<->GluLysAsnThrPheG : 253 |||! !!!||||||!!::!!|||! ! !..! ! ! !:!!!!. ! ! . GlnThrThrArgLeuGluAspLeuThrLysArgGlyMetLeuLeuGluLysGlyValS 290376 : CAAACGACGCGGCTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGA : 290435 254 : lnGluArgIleAlaValIleValArgAspHisAlaGluValLeuArg : 268 ..!!:|||:!:||||||:!!|||!!!! !|||!.!|||:!!|||!:! erAspArgLeuAlaValValValSerGlyHisValGluIleLeuLys 290436 : GTGATCGTTTGGCGGTTGTTGTGAGCGGTCACGTGGAGATCTTGAAG : 290482 vulgar: Lalb_14616 3 268 . KQ414889.1 289681 290482 + 660 M 182 546 G 0 3 M 62 186 G 0 3 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289682 290482 660 + . gene_id 1 ; sequence Lalb_14616 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289682 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289682 290482 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289682 290482 660 + . alignment_id 1 ; Query Lalb_14616 ; Align 289682 4 546 ; Align 290231 186 186 ; Align 290420 248 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 572 Query range: 117 -> 391 Target range: 304413 -> 305783 118 : LeuGluArgAspTrpLysMetValGlnAspProAspHisArgAlaIleMetLeuLysG : 137 |||...! !! !:::!!..!|||:!!..!! ! !!|||! !!!:||||||||| LeuSerThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysT 304414 : CTCTCTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAAT : 304471 138 : lnAlaSerThrSerArgPheLeuIleThrIleCysValGlyPheLeuTyrSerGlyGl : 156 ! !.!..!! !.!!||| !|||! ! !||||||!.! !|||:!!|||!!!||||| yrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGl 304472 : ACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGG : 304528 157 : yMetSerTyrHisThrValMetGlnPheLeuSerLysAspArgThrAsnThr<->Asn : 174 |! ! !||||||||||||||||||||| !!!! ! !..!:!! ! ||| yThrIleTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsn 304529 : CACCATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAAT : 304585 175 : ValThrLeuArgProIleThrTyrProCysPheAsnPheLeu<->AspThrGlnSerS : 193 !|||:!!!:!|||:!!..!|||||| !!:!!:! !||| |||..!|||!!!| ArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrS 304586 : CGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAA : 304645 194 : erProThrTyrGluLeuValPhePheThrHisCysValThrAlaMetValMetGlnTh : 212 |||||! !||||||||||||!:!|||..!||||||:!! !!.! |||!!: ! :! erProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSe 304646 : GCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTC : 304702 213 : rIleThrThrAlaGlyTyrSerLeuAlaAlaThrPheValThrHisMetCysGlyGln : 231 !||||||.!!!.!!.!! !.!!||||||||| !|||!.!|||||| ||||||||| rIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGln 304703 : TATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAA : 304759 232 : IleGlnIleGlnIleSerArgLeuAspAsnLeuIleGlyGluHisArgGluLysAsnT : 251 |||.!.||| !!:|||||||||! !:!!|||:!!..!... !:!|||..!::! IleAspIleValMetSerArgLeuGlyAspLeuValAsnSer---LysGluSerSerA 304760 : ATTGATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGC---AAAGAATCATCTG : 304816 252 : hrPheGlnGluArgIleAlaValIleValArgAspHisAlaGluValLeu{Ar} >> : 268 !!!..!.:!!|||:!! !! !||||||..! !!||| !..!:!!|||{||} spLeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIleLeu{Ar}++ 304817 : ATTTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTA{AG}gt.. : 304871 269 : >> Target Intron 1 >>>> {g}PheSerLysAspValGluGluGlyLeuArg : 278 70 bp {|}|||||| ! |||:!! !! !|||!:! ++{g}PheSerAlaIleValGlnThrValLeuGln 304872 : .......................ag{A}TTCTCGGCAATAGTGCAAACAGTGTTGCAA : 304967 279 : GluIleCysLeuThrGluIleValGluSerThrLeuIleMetCysLeuLeuGluTyrT : 298 |||:!!|||!!! !|||.!!:!!! |||||||||:!:!!:|||||||||||||||| GluValCysPheLeuGluPheIleGlySerThrLeuLeuIleCysLeuLeuGluTyrT 304968 : GAAGTATGCTTCTTGGAATTCATTGGTTCTACCTTACTGATATGTCTACTTGAATACT : 305027 299 : yrCysLeuMet >>>> Target Intron 2 >>>> GluTrpAlaAsnAsnAsp : 307 |||||:!!! ! 62 bp !!:|||! !!:!!:!:!! yrCysIleThr++ ++AspTrpGluSerSerAsn 305028 : ACTGTATAACGgt.........................agGATTGGGAGAGCAGTAAT : 305116 308 : ThrValAlaIleLeuThrTyrIleMetLeuLeuValSerPheThrPheIleIlePheI : 327 ||||||::!:!! !||||||! !:!!||||||:!!||| ! ||||||! !||||||| ThrValSerLeuThrThrTyrThrValLeuLeuIleSerValThrPheAsnIlePheI 305117 : ACCGTTAGTCTTACAACATATACAGTGTTACTGATATCTGTAACATTTAATATATTCA : 305176 328 : lePheCysTyrIleGlyGluLeuLeuSerGluGln >>>> Target Intron 3 : 339 ||!!.|||||||||||||||:!!|||! !|||:!! 413 bp leLeuCysTyrIleGlyGluIleLeuMetGluLys++ 305177 : TATTATGCTACATTGGTGAGATTCTTATGGAAAAGgt..................... : 305214 340 : >>>> CysSerGlnMetGlyProAlaAlaTyrLysIleHisTrpTyrAsnLeuSerS : 356 !!|||...:!:||| !:!!..!!:!! !||| !||||||:!!||| !!! ++SerSerSerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProT 305215 : ....agAGCAGTAGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGA : 305676 357 : erLysAsnSerTyrAspLeuIleLeuLeuCysAlaValAlaLeuTyrProProLysLe : 375 !!|||!..! !:!!! !|||||||||:!! !|||:!!:!! ! !!||| !!|||:! hrLysThrIleHisGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIl 305677 : CTAAGACGATACATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAAT : 305733 376 : uSerAlaGlyLysIleMetAspLeuSerIleAsnThrPheGlyThrVal : 391 !||||||||||||:!!:!:|||||||||:!!::!|||||||||!.!||| eSerAlaGlyLysValValAspLeuSerLeuSerThrPheGlyAsnVal 305734 : CAGTGCTGGTAAAGTAGTTGATTTATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: Lalb_14616 117 391 . KQ414889.1 304413 305783 + 572 M 56 168 G 0 3 M 15 45 G 0 3 M 57 171 G 1 0 M 21 63 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 37 111 5 0 2 I 0 409 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304414 305783 572 + . gene_id 2 ; sequence Lalb_14616 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 304414 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304414 304868 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 1 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304414 305783 572 + . alignment_id 2 ; Query Lalb_14616 ; Align 304414 118 168 ; Align 304585 174 45 ; Align 304633 189 171 ; Align 304804 247 63 ; Align 304940 269 99 ; Align 305101 302 111 ; Align 305625 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 514 Query range: 12 -> 391 Target range: 226903 -> 230406 13 : AsnAspAspTyrGluAsnAspLeuAsnTyrThrLeuGlyMetCysArgLeuLeuLeuL : 32 .!.:!!||||||:!!.!. !!|||||| !:!:!! !:!! !|||! !||||||| GluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuL 226904 : GAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGA : 226961 33 : ysProLeuGlyValTrpThrPheIleTyrAspArgGlySerArgLeuGluArgValLe : 51 |||||||||||:!!||| !! ! !!:!.!!||||||:!!! !||| !!! ysProLeuGlyIleTrpPro---SerSerArgLysSerSerArgIleGlyArgCysPh 226962 : AACCACTCGGTATCTGGCCG---TCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTT : 227015 52 : uSerIleProLeuMetLeuIleCysPheSerSerLeuPhePheIleIleLeuProSer : 70 !||| !:!! !!!:!!|||!:!:!! !:!! !||| :!::!! !!||| eSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSer 227016 : CTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGC : 227072 71 : ValTyrAsnMetLeuPheMetGluGluAspLeuGlnAsnIleValLysLeuLeuGlyP : 90 ! !! !!:!!:!!.!. !! !:!!! ! ! ! |||! :!!|||:!!:!!|||| GlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyP 227073 : GGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTC : 227132 91 : roIleSerPheCysMetPheSerThrIleLysTyrCysLeuLeuGlyMetLysGlyAs : 109 ||!!:||||||! ! !.!.||| !:!!||||||! !:!!||| !.!. ! ! !:! roMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAs 227133 : CGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGA : 227189 110 : nThrLeuGlyGlnCysIleLeuHisLeuGluArgAspTrpLysMetValGlnAspPro : 128 ! !:!! !:!!|||:!! !!..:!!:!! !!|||||||||! :!!::! !!! ! pAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeu 227190 : CGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTG : 227246 129 : AspHisArgAlaIleMetLeuLysGlnAlaSerThrSerArgPheLeuIleThrIleC : 148 !!: !!||| !:!:|||:!!! ! ! |||! ! !.!!||| ||||||||||||| GluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleC 227247 : GAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTT : 227306 149 : ysValGlyPheLeuTyrSerGlyGlyMetSerTyrHisThrValMetGlnPheLeu<- : 167 ||..! !|||:!!!:!|||... ::: ::::::! !|||:!:! .!! ! ysThrPhePheValPheSerSerPheValPhePheTyrIleValValProIleAsnAl 227307 : GCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGC : 227363 168 : ><->SerLysAspArgThrAsnThrAsnValThrLeuArgProIleThrTyrProCys : 184 ||| ! ! ! !:!! !||| !!:!! !! !! !!!: !!!:!|||! ! aGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPhe 227364 : CGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTT : 227420 185 : PheAsnPheLeu<->AspThrGlnSerSerProThrTyrGluLeuValPhePheThrH : 203 !!..!!:!! |||..!!::! !|||||| ! !!|||:!! !!|||! ..!! ProLysIleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValG 227421 : CCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTAC : 227480 204 : isCysValThrAlaMetValMetGlnThrIleThrThrAlaGlyTyrSerLeuAlaAl : 222 !.! !||||||!.!!!:|||:!!!!. !:!!|||:!!|||!.!! !|||:!!||||| lnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAl 227481 : AATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGC : 227537 223 : aThrPheValThrHisMetCysGlyGlnIleGlnIleGlnIleSerArgLeuAspAsn : 241 | !.!!!.!..!||| |||||||||!!::!!:!: !:!:||| !!|||! :!! aLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHis 227538 : CCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACAT : 227594 242 : LeuIle<->GlyGluHisArgGluLysAsnThrPheGlnGluArgIleAlaValIleV : 260 |||||| |||..! ! !!..!!.|||.!..!.!!:||||||||| !|||| LeuIleAspGlyArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleV 227595 : TTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCG : 227654 261 : alArgAspHisAlaGluValLeu{Ar} >>>> Target Intron 1 >>>> {g : 268 ||! ! !!|||!.!..!:!!|||{!.} 396 bp {! alThrHisHisValArgIleLeu{As}++ ++{n 227655 : TCACTCACCACGTTCGAATATTG{AA}gt.........................ag{C : 228076 269 : }PheSerLysAspValGluGluGlyLeuArgGluIleCysLeuThrGluIleValGlu : 287 }||| ! !:!!|||:!! !:!!!:!:!!|||..!!!!..!|||.!!:!!! ! }PheLeuAlaLeuIleGluLysThrMetGlnGlnIleAlaPheValGluPheLeuGly 228077 : }TTTCTGGCCCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGG : 228131 288 : SerThrLeuIleMetCysLeuLeuGluTyrTyrCysLeuMet >>>> Target In : 302 !!!|||:!!|||:!!||||||:!!||||||||| !:!!! ! 72 b CysThrIleIleLeuCysLeuIleGluTyrTyrIleIleThr++ 228132 : TGTACAATAATTCTGTGCCTCATCGAGTATTACATCATAACGgt.............. : 228178 303 : tron 2 >>>> GluTrpAlaAsnAsnAspThrValAlaIleLeuThrTyrIleMet : 316 p |||||| ! !!.!!: !..! ! !:!!|||||| ! ! ++GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAla 228179 : ...........agGAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCG : 228290 317 : LeuLeuValSerPheThrPheIleIlePheIlePheCysTyrIleGlyGluLeuLeuS : 336 ||||||:!!|||||||||||| |||||||||||||||||||||||||||:!!:!!: LeuLeuLeuSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValA 228291 : TTACTTTTATCCTTTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTG : 228350 337 : erGluGln >>>> Target Intron 3 >>>> CysSerGlnMetGlyProAla : 345 !!|||!!. 1889 bp |||!!!:!!:!:||| ! ! laGluHis++ ++CysArgLysValGlyGluLys 228351 : CCGAACACgt.........................agTGCAGAAAAGTCGGCGAAAAG : 230266 346 : AlaTyrLysIleHisTrpTyrAsnLeuSerSerLysAsnSerTyrAspLeuIleLeuL : 365 :!!|||! !|||.!.||||||...|||!!!.!!!!.!!.!.! ! !! !||||||: SerTyrMetIleGluTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuI 230267 : TCGTACATGATCGAATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGA : 230326 366 : euCysAlaValAlaLeuTyrProProLysLeuSerAlaGlyLysIleMetAspLeuSe : 384 !! !|||:!!:!! !! ! !! !!|||!!!!!!||||||!!.!!::!:!!:||||| leIleAlaMetSerAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSe 230327 : TCATCGCCATGTCCAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATC : 230383 385 : rIleAsnThrPheGlyThrVal : 391 |:!!|||||||||.!! !||| rValAsnThrPheSerAspVal 230384 : CGTAAACACTTTCAGCGACGTA : 230406 vulgar: Lalb_14616 12 391 . KQ414889.1 226903 230406 + 514 M 26 78 G 1 0 M 127 381 G 0 6 M 22 66 G 0 3 M 55 165 G 0 3 M 24 72 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226904 230406 514 + . gene_id 3 ; sequence Lalb_14616 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226904 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226904 227679 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230406 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230406 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226904 230406 514 + . alignment_id 3 ; Query Lalb_14616 ; Align 226904 13 78 ; Align 226982 40 381 ; Align 227369 167 66 ; Align 227438 189 165 ; Align 227606 244 72 ; Align 228077 269 99 ; Align 228248 302 111 ; Align 230248 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 473 Query range: 16 -> 391 Target range: 204221 -> 206401 17 : GluAsnAspLeuAsnTyrThrLeuGlyMetCysArgLeuLeuLeuLysProLeuGlyV : 36 |||.!.||||||!..|||.!! ! !!.!. !:!! !:!!||| ! !:!!|||! GluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyA 204222 : GAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTG : 204279 37 : alTrpThrPheIleTyrAspArgGlySerArgLeuGluArgValLeuSerIleProLe : 55 .!||| !! ||| ! !.!..!|||! !!!! !|||:!!:!! !! ! ! laTrpPro---IleProValAsnSerSerProPheThrArgLeuValArgArgIleGl 204280 : CGTGGCCG---ATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGA : 204333 56 : uMetLeuIleCysPheSerSerLeuPhePheIleIleLeuProSerValTyrAsnMet : 74 ! :!!:!! !::: ...|||...:!:|||:!!|||.!!:!!! !!:!! uHisValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrVal 204334 : ACACGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTG : 204390 75 : LeuPheMetGluGluAspLeuGlnAsnIleValLysLeuLeuGlyProIleSerPheC : 94 !!!.!.! !|||:!!:!! !:!!! ! !:!!|||:!!|||||||||||| ! !| PheLeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnC 204391 : TTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACT : 204450 95 : ysMetPheSerThrIleLysTyrCysLeuLeuGlyMetLysGlyAsnThrLeuGlyGl : 113 ||! .!...! !.!!||||||! !:!!:!! ! ::! !:!!! !:!! !:! ysSerIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLy 204451 : GCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAA : 204507 114 : nCysIleLeuHisLeuGluArgAspTrpLysMetValGlnAspProAspHisArgAla : 132 ! !!:!: ! !:!!..!|||||||||! ! !!.! !||| !!::!!||| ! sSerLeuAsnThrIleArgArgAspTrpIleGluAlaThrAsp---GluAsnArgLeu 204508 : GAGTTTGAACACCATCAGACGCGACTGGATAGAGGCTACGGAT---GAAAATCGGTTG : 204561 133 : IleMetLeuLysGlnAlaSerThrSerArgPheLeuIleThrIleCysValGlyPheL : 152 |||.!.! !..!:!!|||!.!! !.!!||| :!!:!: !|||...!.!!.! !: IlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrM 204562 : ATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTA : 204621 153 : euTyrSerGlyGlyMetSerTyrHisThrValMetGlnPheLeu<->SerLysAspAr : 170 !!|||.!!||||||:!!!!!|||...|||:!!:!:! !!.||| .!!! ! ! etTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleVa 204622 : TGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGT : 204678 171 : gThrAsnThrAsnValThrLeuArgProIleThrTyrProCys<->PheAsnPheLeu : 188 !||| ! !|||||||||:!!||||||:!: !!! !||| ! ||| |||... lThrProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePhe 204679 : AACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttcttt : 204735 189 : AspThrGlnSerSerProThrTyrGluLeuValPhePheThrHisCysValThrAlaM : 208 ::: !||| !!||||||!.!||||||:!!||||||.!. !!!. !:!!.!!!.!. AsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyP 204736 : aacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTT : 204795 209 : etValMetGlnThrIleThrThrAlaGlyTyrSerLeuAlaAlaThrPheValThrHi : 227 !.|||! ! .!!:!!! !!:!!.! !! !.!!:!!..!||| !|||||| !|| heValThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHi 204796 : TTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCA : 204852 228 : sMetCysGlyGlnIleGlnIleGlnIleSerArgLeuAspAsnLeuIleGlyGluHis : 246 | !|||.!!..!:!:::!||| !:!:!:!!:!:!!:!! |||:!:! !:!! sAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAla 204853 : CGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCG : 204909 247 : ArgGluLysAsnThrPheGlnGluArg<->IleAlaValIleValArgAspHisAlaG : 265 ! !! .!.|||.!! !.!.||| ||||||! !||||||..! !!!!..!!: AspMetThrGluThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrL 204910 : GACATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGA : 204969 266 : luValLeu{Ar} >>>> Target Intron 1 >>>> {g}PheSerLysAspVa : 273 !!:!! !{||} 905 bp {|}|||! !|||:!!:! ysIleLys{Ar}++ ++{g}PheLeuLysAsnIl 204970 : AGATAAAG{AG}gt.........................ag{A}TTTTTAAAGAACAT : 205898 274 : lGluGluGlyLeuArgGluIleCysLeuThrGluIleValGluSerThrLeuIleMet : 292 !||| ! ! !..! ! |||||||||||||||!!:|||! .!!||| !:!!:!: eGluThrIleThrGluTyrIleCysLeuThrGluMetValGlyGlyThrGlyLeuVal 205899 : TGAAACAATTACAGAGTACATTTGTTTAACCGAAATGGTGGGCGGTACGGGTCTAGTA : 205955 293 : CysLeuLeuGluTyrTyrCysLeuMet >>>> Target Intron 2 >>>> Gl : 302 ||||||:!! ! |||||| !|||||| 66 bp || CysLeuValTyrTyrTyrIleLeuMet++ ++Gl 205956 : TGTCTCGTGTATTATTACATTCTCATGgt.........................agGA : 206051 303 : uTrpAlaAsnAsnAspThrValAlaIleLeuThrTyrIleMetLeuLeuValSerPhe : 321 ||||! !||||||:!!|||..!|||:!!:!!..!||||||! !|||! !:!!|||! ! uTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerCys 206052 : ATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTTGT : 206108 322 : ThrPheIleIlePheIlePheCysTyrIleGlyGluLeuLeuSerGluGln >>>> : 339 |||||| !:!!||||||.!.||||||||||||:!!||||||! !!!:||| ThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : ACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt..... : 206164 340 : Target Intron 3 >>>> CysSerGlnMetGlyProAlaAlaTyrLysIleHis : 350 81 bp ! ! :!!||| !.!!:!!! !! !:!::!! ++AsnHisValValGlyLeuThrSerCysThrValAsn 206165 : ....................agAACCACGTCGTGGGATTGACATCTTGCACGGTGAAT : 206276 351 : TrpTyrAsnLeuSerSerLysAsnSerTyrAspLeuIleLeuLeuCysAlaValAlaL : 370 ||||||..!||| !!!:!!:!:!!:!! !..!:!!||||||:!! !|||:!!:!! TrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSerA 206277 : TGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTCTA : 206336 371 : euTyrProProLysLeuSerAlaGlyLysIleMetAspLeuSerIleAsnThrPheGl : 389 !|||||| !||||||!!!|||||||||!!:.!.!!::!!|||:!! !!:!||| snTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPheTh 206337 : ATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTCAC : 206393 390 : yThrVal : 391 ! !||| rAspVal 206394 : CGATGTA : 206401 vulgar: Lalb_14616 16 391 . KQ414889.1 204221 206401 + 473 M 22 66 G 1 0 M 88 264 G 1 0 M 38 114 G 0 3 M 18 54 G 0 3 M 71 213 G 0 3 M 12 36 S 0 2 5 0 2 I 0 901 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204222 206401 473 + . gene_id 4 ; sequence Lalb_14616 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 204222 204979 . + . KQ414889.1 exonerate:protein2genome:local exon 204222 204979 . + . insertions 9 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 204980 204981 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 204980 205884 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 205883 205884 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 205885 205984 . + . KQ414889.1 exonerate:protein2genome:local exon 205885 205984 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 205985 205986 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 205985 206050 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 206049 206050 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 204222 206401 473 + . alignment_id 4 ; Query Lalb_14616 ; Align 204222 17 66 ; Align 204288 40 264 ; Align 204552 129 114 ; Align 204669 167 54 ; Align 204726 185 213 ; Align 204942 256 36 ; Align 205886 269 99 ; Align 206051 302 111 ; Align 206243 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 434 Query range: 264 -> 391 Target range: 300605 -> 302036 265 : GluValLeuArgPheSerLysAspValGluGluGlyLeuArgGluIleCysLeuThrG : 284 ||| !! !||||||:!!|||:!!||||||||| !||||||!!:.!!||||||..!| GluAsnCysArgPheAlaLysAsnValGluGluThrLeuArgAspPheCysLeuValG 300606 : GAAAATTGCAGATTTGCAAAGAACGTTGAGGAAACTTTGCGTGACTTCTGCTTAGTGG : 300663 285 : luIleValGluSerThrLeuIleMetCysLeuLeuGluTyrTyrCysLeuMet >>> : 302 ||||| !!|||||||||||||||:!!||||||||||||||||||||||||:!! luIlePheGluSerThrLeuIleLeuCysLeuLeuGluTyrTyrCysLeuVal++ 300664 : AAATCTTCGAGTCCACGCTGATTTTGTGTTTGCTCGAATACTACTGTTTGGTGgt... : 300719 303 : > Target Intron 1 >>>> GluTrpAlaAsnAsnAspThrValAlaIleLeuT : 313 970 bp |||||| !|||!:!||||||:!!|||!!:|||| ++GluTrpGlnAsnSerAspThrIleAlaMetLeuT 300720 : ......................agGAATGGCAAAATAGCGACACGATCGCTATGTTGA : 301720 314 : hrTyrIleMetLeuLeuValSerPheThrPheIleIlePheIlePheCysTyrIleGl : 332 ||!:!.!!! ||||||..!||||||||||||! !||||||||||||||||||||||| hrPhePheThrLeuLeuThrSerPheThrPheAsnIlePheIlePheCysTyrIleGl 301721 : CATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGG : 301777 333 : yGluLeuLeuSerGluGln >>>> Target Intron 2 >>>> CysSerGlnM : 342 ||||:!!|||||||||||| 80 bp |||||||||! yGluIleLeuSerGluGln++ ++CysSerGlnI 301778 : CGAGATTCTTTCCGAACAGgt.........................agTGTAGCCAAA : 301887 343 : etGlyProAlaAlaTyrLysIleHisTrpTyrAsnLeuSerSerLysAsnSerTyrAs : 361 !:||| !!|||:!!|||:!!||| !!|||||||||||| !!:!!|||!..:!!||||| leGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAs 301888 : TTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGA : 301944 362 : pLeuIleLeuLeuCysAlaValAlaLeuTyrProProLysLeuSerAlaGlyLysIle : 380 ||||||||||||| !!!.!:!!:!!! !|||||||||||||||!!!|||||||||||| pLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGlyLysIle 301945 : TCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATA : 302001 381 : MetAspLeuSerIleAsnThrPheGlyThrVal : 391 !!:|||||||||:!:|||||||||.!!:!!||| IleAspLeuSerLeuAsnThrPheSerSerVal 302002 : ATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: Lalb_14616 264 391 . KQ414889.1 300605 302036 + 434 M 37 111 5 0 2 I 0 966 3 0 2 M 37 111 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300606 302036 434 + . gene_id 5 ; sequence Lalb_14616 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300606 300716 . + . KQ414889.1 exonerate:protein2genome:local exon 300606 300716 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300717 300718 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300717 301686 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301685 301686 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300606 302036 434 + . alignment_id 5 ; Query Lalb_14616 ; Align 300606 265 111 ; Align 301687 302 111 ; Align 301878 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 399 Query range: 128 -> 268 Target range: 300009 -> 300477 129 : AspHisArgAlaIleMetLeuLysGlnAlaSerThrSerArgPheLeuIleThrIleC : 148 :!!||||||.!!|||||||||!:! ! !.!!!!! !|||||| !|||! |||:!:| AsnHisArgThrIleMetLeuArgTyrValThrMetSerArgAsnLeuThrThrValC 300010 : AATCATCGTACGATCATGTTGAGATACGTGACTATGAGCAGAAATCTGACGACCGTGT : 300067 149 : ysValGlyPheLeuTyrSerGlyGlyMetSerTyrHisThrValMetGlnPheLeuSe : 167 ||!.!! !|||||||||:!!|||||||||||||||||||||||||||||||||||||| ysAlaValPheLeuTyrAlaGlyGlyMetSerTyrHisThrValMetGlnPheLeuSe 300068 : GCGCCGTGTTTCTTTACGCAGGTGGTATGTCGTATCACACGGTGATGCAGTTCTTATC : 300124 168 : rLysAspArgThr{As} >>>> Target Intron 1 >>>> {n}ThrAsnVal : 175 ||||||||||!:!{!.} 45 bp {.} !||| ! rLysAspArgSer{Ar}-- ++{g}GluAsnTyr 300125 : GAAGGACAGAAGC{AG}cg.........................ag{G}GAGAATTAC : 300193 176 : ThrLeuArgProIleThrTyrProCysPheAsn<->PheLeuAspThrGlnSerSerP : 194 |||! !!:!|||:!!.!!|||||| !!!:!:!! |||:!!|||||||||!!!|||| ThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnThrSerP 300194 : ACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAACCAGTC : 300253 195 : roThrTyrGluLeuValPhePheThrHisCysValThrAlaMetValMetGlnThrIl : 213 |||||||||||:::||||||||| |||||| !!.!!||||||:!!||| ! !.!:! roThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTyrAsnVa 300254 : CTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTACAACGT : 300310 214 : eThrThrAlaGlyTyrSerLeuAlaAlaThrPheValThrHisMetCysGlyGlnIle : 232 :|||||||||!.!|||||||||||||||! !||||||||||||!!:|||||||||||| lThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGlyGlnIle 300311 : GACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGACAGATT : 300367 233 : GlnIleGlnIleSerArgLeuAspAsnLeuIleGlyGluHisArgGluLysAsnThrP : 252 |||||||||!!::!!||||||!!::!!|||:!:! !..! !!||||||:!! ! GlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrGlyGluLysAspAspG 300368 : CAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGGGAGAGAAGGACGACG : 300427 253 : heGlnGluArgIleAlaValIleValArgAspHisAlaGluValLeuArg : 268 !! !!:! !:!:!.!||||||||||||||||||!.!:!!||||||||| lyProAspProLeuValValIleValArgAspHisValLysValLeuArg 300428 : GTCCTGATCCTTTGGTCGTTATCGTTCGAGATCACGTGAAGGTTTTAAGG : 300477 vulgar: Lalb_14616 128 268 . KQ414889.1 300009 300477 + 399 M 43 129 S 0 2 5 0 2 I 0 41 3 0 2 S 1 1 M 14 42 G 0 3 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300010 300477 399 + . gene_id 6 ; sequence Lalb_14616 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300010 300140 . + . KQ414889.1 exonerate:protein2genome:local exon 300010 300140 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300141 300142 . + . intron_id 1 ; splice_site "CG" KQ414889.1 exonerate:protein2genome:local intron 300141 300185 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300184 300185 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300186 300477 . + . KQ414889.1 exonerate:protein2genome:local exon 300186 300477 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300010 300477 399 + . alignment_id 6 ; Query Lalb_14616 ; Align 300010 129 129 ; Align 300187 173 42 ; Align 300232 187 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 374 Query range: 14 -> 276 Target range: 221357 -> 222152 15 : AspTyrGluAsnAspLeuAsnTyrThrLeuGlyMetCysArgLeuLeuLeuLysProL : 34 ||||||:!!!..:!!:!!!!.! !:!:!! !:!! !!|||! !:!!|||||||||: AspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProI 221358 : GATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGA : 221415 35 : euGlyValTrpThrPheIleTyrAspArgGlySerArgLeuGluArgValLeuSerIl : 53 !!||||||||| !! ! ! !:!!! ! |||! !:!!|||||| !|||! ! leGlyValTrpProAsnSerAlaAsnIle---SerThrValGluArgTyrLeuTyrTr 221416 : TCGGTGTTTGGCCAAATTCAGCCAACATT---TCCACGGTAGAGAGATACCTCTACTG : 221469 54 : eProLeuMetLeuIleCysPheSerSerLeuPhePheIleIleLeuProSerValTyr : 72 ! !:!!! :!!:!!|||!:!||| !:!! |||:!!:!::!!|||!!! ! ! pLeuIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeu 221470 : GCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTT : 221526 73 : AsnMetLeuPheMetGluGluAspLeuGlnAsnIleValLysLeuLeuGlyProIleS : 92 !!:!!:!!.!! ! !||||||:!! ! |||! !:!!|||||||||||||||:!:| TyrValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuS 221527 : TACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGA : 221586 93 : erPheCysMetPheSerThrIleLysTyrCysLeuLeuGlyMetLysGlyAsnThrLe : 111 ||||||||:!!.!.:!! !:!!|||||| !|||||| !:!: ! ! !||| !:! erPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIl 221587 : GTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACAT : 221643 112 : uGlyGlnCysIleLeuHisLeuGluArgAspTrpLysMetValGlnAspProAspHis : 130 ! !!:!!|||||| !!.!:!!||| !!|||||||||! :!! !! !! ! !! eArgGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAsp 221644 : CCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGAT : 221700 131 : ArgAlaIleMetLeuLysGlnAlaSerThrSerArgPheLeuIleThrIleCysValG : 150 !:!! !||||||:!!:!!.!.|||! ! !.!!||| ||||||! !||||||..! LysAspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrP 221701 : AAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACAT : 221760 151 : lyPheLeuTyrSerGlyGlyMetSerTyrHisThrValMetGlnPhe<->LeuSerLy : 168 !|||:!!||||||||| ::: |||::: !!.!!!:! !||| :!!.!!|| hePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLy 221761 : TTTTCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAA : 221817 169 : s<->AspArgThrAsnThrAsnValThrLeuArgProIleThrTyrProCysPheAsn : 186 | ! ! !:!!...|||||||||... |||!!:..!!:!|||! !! !.. sIleProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArg 221818 : AATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGA : 221874 187 : PheLeu<->AspThrGlnSerSerProThrTyrGluLeuValPhePheThrHisCysV : 205 |||:!! ||||||!:!! !||||||..! !!|||:!!:!!|||! !!!. !: PheIleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleM 221875 : TTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTA : 221934 206 : alThrAlaMetValMetGlnThrIleThrThrAlaGlyTyrSerLeuAlaAlaThrPh : 224 !!.!!!.! :!!|||!!.!:!||||||:!!|||!.!! !||||||!.!|||! !|| etAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPh 221935 : TGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTT : 221991 225 : eValThrHisMetCysGlyGlnIleGlnIleGlnIleSerArgLeuAspAsnLeuIle : 243 |!.!..!||| |||||||||!!:|||:!: !!!:||| !!||| ! :!!|||||| eAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIle 221992 : TGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATC : 222048 244 : GlyGluHisArgGluLys<->AsnThrPheGlnGluArgIleAlaValIleValArgA : 262 ..!! !.. !!!:! ! |||!.! ! .!...!||||||||| !||||||!.!. AsnGlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnG 222049 : AACGGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATC : 222108 263 : spHisAlaGluValLeuArgPheSerLysAspValGluGluGly : 276 !.|||!.!..!:!!|||!:!!:! !::: !:!!! ...||| lnHisValArgIleLeuGlnTyrValArgCysIleGlyArgGly 222109 : AACACGTTCGAATATTGCAGTATGTACGTTGTATCGGCCGtggg : 222152 vulgar: Lalb_14616 14 276 . KQ414889.1 221357 222152 + 374 M 29 87 G 1 0 M 121 363 G 0 3 M 3 9 G 0 3 M 20 60 G 0 3 M 61 183 G 0 3 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221358 222152 374 + . gene_id 7 ; sequence Lalb_14616 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221358 222152 . + . KQ414889.1 exonerate:protein2genome:local exon 221358 222152 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221358 222152 374 + . alignment_id 7 ; Query Lalb_14616 ; Align 221358 15 87 ; Align 221445 45 363 ; Align 221811 166 9 ; Align 221823 169 60 ; Align 221886 189 183 ; Align 222072 250 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 347 Query range: 8 -> 243 Target range: 284484 -> 285204 9 : ValLysSerPheAsnAspAspTyrGluAsnAspLeuAsnTyrThrLeuGlyMetCysA : 28 ..!...||| !:!!... !::!!:!..|||! !! |||!:!:!! !||| !| ThrSerSerThrAspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnA 284485 : ACTTCTTCAACCGATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACC : 284542 29 : rgLeuLeuLeuLysProLeuGlyValTrpThrPheIleTyrAspArgGlySerArgLe : 47 ||! !!!!|||||||||:!!||||||||| !!.!!! ! ! !!! !!!!! !|| rgTrpPheLeuLysProIleGlyValTrpProLeuSerLeu---CysValThrThrLe 284543 : GTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTC---TGCGTGACCACCTT : 284596 48 : uGluArgValLeuSerIleProLeuMetLeuIle<->CysPheSerSerLeuPhePhe : 65 ||||!:!:!! !|||:!: !||| !|||||| |||||| !! ! !|||.!! uGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeu 284597 : GGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTC : 284653 66 : IleIleLeuProSerValTyrAsnMetLeuPheMetGluGluAspLeuGlnAsnIleV : 85 :!::!!! ! !:!!:!!! !!..:!!||| !! ! ||||||.!.!..! : LeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysI 284654 : TTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGA : 284713 86 : alLysLeuLeuGlyProIleSerPheCysMetPheSerThrIleLysTyrCysLeuLe : 104 !!|||:!!:!!||||||:!:||||||||||||.!.:!!.!!|||||||||! !:!!|| leLysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLe 284714 : TCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCT : 284770 105 : uGlyMetLysGlyAsnThrLeuGlyGlnCysIleLeuHisLeuGluArgAspTrpLys : 123 | ! !:::|||..!! !:!!|||||||||:!: ! !!:!!... !||||||... uIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIleArgAlaAspTrpSer 284771 : AATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGACTGGTCT : 284827 124 : MetVal<-><-><->GlnAspProAspHisArgAlaIleMetLeuLysGlnAlaSerT : 140 :!:..! ...... :::...||| |||||| ! ! ...|||!!!! LeuThrLeuSerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgI 284828 : CTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAA : 284887 141 : hrSerArgPheLeuIleThrIleCysValGlyPheLeuTyrSerGlyGlyMetSerTy : 159 !.!!|||! !||| ! !.!!|||!.!||||||:!!||||||||||||.!.! !|| leGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTy 284888 : TTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTA : 284944 160 : rHisThrValMetGlnPheLeuSer<->LysAspArgThrAsnThrAsnValThrLeu : 177 | !|||||||||! !!!.! !!!! ::: ..!! !! ! !|||! !|||:!! rThrThrValMetProLeuCysThrValArgThrGluIleIleAspAsnGluThrVal 284945 : CACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTG : 285001 178 : ArgProIleThrTyrProCysPhe<->AsnPheLeuAspThrGlnSerSerProThrT : 196 ||| !! !.!!!:!||| !!:! ..!.!!|||||| !!!::!!!||||||:!!! ArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerP 285002 : AGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGT : 285061 197 : yrGluLeuValPhePheThrHisCysValThrAlaMetValMetGlnThrIleThrTh : 215 :!|||:!!||| |||! !!!.|||:!!.!!|||.!.|||!!: ! :!!:!!|||.. heGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrVa 285062 : TCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGT : 285118 216 : rAlaGlyTyrSerLeuAlaAlaThrPheValThrHisMetCysGlyGlnIleGlnIle : 234 !!.!!.!! !||||||||||||..!||||||! !|||:!:|||||||||.!!::!||| lGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIle 285119 : TGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATA : 285175 235 : GlnIleSerArgLeuAspAsnLeuIle : 243 ! :!:!!!!:!||||||!!.|||:!! LeuValThrLysLeuAspLysLeuVal 285176 : CTTGTGACAAAGCTGGATAAGCTCGTC : 285204 vulgar: Lalb_14616 8 243 . KQ414889.1 284484 285204 + 347 M 33 99 G 1 0 M 16 48 G 0 3 M 67 201 G 0 9 M 42 126 G 0 3 M 18 54 G 0 3 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284485 285204 347 + . gene_id 8 ; sequence Lalb_14616 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284485 285204 . + . KQ414889.1 exonerate:protein2genome:local exon 284485 285204 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284485 285204 347 + . alignment_id 8 ; Query Lalb_14616 ; Align 284485 9 99 ; Align 284584 43 48 ; Align 284635 59 201 ; Align 284845 126 126 ; Align 284974 168 54 ; Align 285031 186 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 341 Query range: 9 -> 199 Target range: 294651 -> 295227 10 : LysSerPheAsnAspAspTyrGluAsnAspLeuAsnTyrThrLeuGlyMetCysArgL : 29 !:!!!!.!.:!!||| ! !!..!||||||:!! !!!:!||| ! |||||| ArgThrMetAspAspThrAsnArgAsnAspValAlaAsnSerLeuLysTyrCysArgA 294652 : AGAACCATGGACGATACTAACAGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAA : 294709 30 : euLeuLeuLysProLeuGlyValTrpThrPheIleTyrAspArgGlySerArgLeuGl : 48 !||||||||||||:!!|||:!!||| !!.!!||||||..!!.! !|||!:!|||.! rgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrSerHisThrSerLysLeuAs 294710 : GGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACAGTCACACCAGCAAACTGAA : 294766 49 : uArgValLeuSerIleProLeuMetLeuIleCysPheSerSerLeuPhePheIleIle : 67 .!:!|||||||||||| !|||!!: ! ||| ! !!!!:!!.!.|||:!!:!! nLysValLeuSerIleIleLeuIleAlaTrpCysThrLeuThrValLeuPheValLeu 294767 : CAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTA : 294823 68 : LeuProSerValTyrAsnMetLeuPheMetGluGluAspLeuGlnAsnIleValLysL : 87 :!!|||!!!! !||| ! :!!||| ! :::::::::::: :!!|||| ValProCysGlyTyrPheCysValPheHisValLysAsnValLysLeuLysMetLysL 294824 : GTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaacgtgaaattgaaGATGAAAC : 294883 88 : euLeuGlyProIleSerPheCysMetPheSerThrIleLysTyrCysLeuLeuGlyMe : 106 |||||||||||:!! !!:!! !|||.!!|||! !:!!!:!||| !!! !|||! !:! euLeuGlyProValLeuTyrSerMetLeuSerMetLeuArgTyrSerCysLeuValLe 294884 : TTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTT : 294940 107 : tLysGlyAsnThrLeuGlyGlnCysIleLeuHisLeuGluArgAspTrpLysMetVal : 125 !||| ! !.!!!!! !!!.|||||| ! !!:!!|||!.!|||||||||:!!:!! uLysThrProAlaPheLysHisCysIleGluAspIleGluAsnAspTrpLysLeuIle 294941 : GAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGAGAACGATTGGAAGTTGATC : 294997 126 : GlnAspProAspHisArgAlaIleMetLeuLysGlnAlaSerThrSerArgPheLeuI : 145 .!.:!!|||!!:|||||||||||||||:!!|||.!.|||! !..!!!!!:! :!!! AspAsnProGluHisArgAlaIleMetIleLysAsnAlaMetValThrGlnArgMetT 294998 : GATAATCCGGAACACCGAGCGATCATGATCAAGAACGCGATGGTCACGCAGAGGATGA : 295057 146 : leThrIleCysValGlyPheLeuTyrSerGlyGlyMetSerTyrHisThrValMetGl : 164 !..! !! !..! !.!.:!!||||||..!!.!:!!|||||||||.!!:!!::: hrValAlaPheThrIleIleIleTyrSerSerAlaValSerTyrHisAlaIleValPr 295058 : CCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgcc : 295114 165 : nPheLeuSerLysAspArgThrAsn<->ThrAsnValThrLeuArgProIleThrTyr : 182 |||...|||... ! !||| ! !||| !|||:!!||| !!:!! !! ! oPhePheSerAsnAlaLeuGluAsnLysLysAsnAsnThrIleArgAlaLeuProIle 295115 : atttttttcaaacgctTTGGAGAACAAGAAGAATAATACGATTCGTGCGTTACCAATT : 295171 183 : ProCysPheAsn<->PheLeuAspThrGlnSerSerProThrTyrGluLeuVal : 199 ||| !!!:!.!. |||:!!|||.!! ! ||||||||||||||||||:!!:!! ProGlyTyrGluLeuPheValAspAlaTyrSerSerProThrTyrGluIleIle 295172 : CCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: Lalb_14616 9 199 . KQ414889.1 294651 295227 + 341 M 163 489 G 0 3 M 14 42 G 0 3 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294652 295227 341 + . gene_id 9 ; sequence Lalb_14616 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294652 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294652 295227 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294652 295227 341 + . alignment_id 9 ; Query Lalb_14616 ; Align 294652 10 489 ; Align 295144 173 42 ; Align 295189 187 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 336 Query range: 14 -> 268 Target range: 217153 -> 217924 15 : AspTyrGluAsnAspLeuAsnTyrThrLeuGlyMetCysArgLeuLeuLeuLysProL : 34 !!:||||||...::::::||| ::!:!! ! ! !|||! !||||||||||||: GluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProM 217154 : GAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGA : 217211 35 : euGlyValTrpThrPheIleTyrAspArgGlySerArgLeuGluArgValLeuSerIl : 53 !!|||:!!||| !! ! ! ! !! ! !!!|||! !..!!:!:!!|||! !! etGlyLeuTrpProAsnSerArgThrThr---ThrArgSerArgLysIleLeuTyrLy 217212 : TGGGTCTTTGGCCAAACTCACGTACCACC---ACCAGATCCCGAAAAATCCTCTACAA : 217265 54 : eProLeuMetLeuIleCysPheSerSerLeuPhePheIleIleLeuProSerValTyr : 72 !! !:!!! !:!!|||!:!.!!! !:!! !|||:!!.!!:!!|||!!! ! sLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMet 217266 : ACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATG : 217322 73 : AsnMetLeuPheMetGluGluAspLeuGlnAsnIleValLysLeuLeuGlyProIleS : 92 !!:!!!!!.!! ! ||||||||| ! :!!! :!!||||||!!!||||||:!:! TyrValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuI 217323 : TACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGA : 217382 93 : erPheCysMetPheSerThrIleLysTyrCysLeuLeuGlyMetLysGlyAsnThrLe : 111 !||||||:!!.!.:!! !:!!||||||! !! !||| !:!: ! ! !:! lePheCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIl 217383 : TCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACAT : 217439 112 : uGlyGlnCysIleLeuHisLeuGluArgAspTrpLysMetValGlnAspProAspHis : 130 ! !!:!!|||:!: !...:!!||||||||||||!:!! |||::! ! ! ! !! eArgGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAsp 217440 : TCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGAC : 217496 131 : ArgAlaIleMetLeuLysGlnAlaSerThrSerArgPheLeuIleThrIleCysValG : 150 |||! ! |||:!! !.!.|||!:! !.!!||| |||:!! !:!!|||..! ArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrP 217497 : AGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCT : 217556 151 : lyPheLeuTyrSerGlyGlyMetSerTyrHisThrValMetGlnPheLeuSerLysAs : 169 !|||:!!||||||||| ::: |||::: !!.!!!:! !.!! ! ! ! hePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyAr 217557 : TCTTCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAG : 217613 170 : p<-><->ArgThrAsnThrAsnValThrLeuArgProIleThrTyrProCysPheAsn : 186 ! !||| !|||:!!|||!!!! !|||:!:..!!:!|||! ! !!. gIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLys 217614 : AATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAG : 217670 187 : Phe<->LeuAspThrGlnSerSerProThrTyrGluLeuValPhePheThrHisCysV : 205 !:! :!!||||||!::! !!!!|||||| !!|||:!!||||||||| !!!.! : TyrIleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuI 217671 : TATATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGA : 217730 206 : alThrAlaMetValMetGlnThrIleThrThrAlaGlyTyrSerLeuAlaAlaThrPh : 224 !!.!!!.! :!!|||!!. !||||||:!!|||!.!! !||||||||||||.!!|| leAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPh 217731 : TCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTT : 217787 225 : eValThrHisMetCysGlyGlnIleGlnIleGlnIleSerArgLeuAspAsnLeuIle : 243 |!.!..!||| ||||||||||||:!!:!: !!!:!:! !!|||.!.:!!|||||| eAlaValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIle 217788 : CGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATC : 217844 244 : <->GlyGluHisArgGluLysAsnThrPheGlnGluArgIleAlaValIleValArgA : 262 |||..! ! !!..:!!||| ! .!.! ||||||||| !||||||!!!. AspGlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerG 217845 : GACGGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTC : 217904 263 : spHisAlaGluValLeuArg : 268 !.|||!.!..!:!!|||!:! lnHisValArgIleLeuLys 217905 : AACACGTTCGGATATTAAAG : 217924 vulgar: Lalb_14616 14 268 . KQ414889.1 217153 217924 + 336 M 29 87 G 1 0 M 125 375 G 0 6 M 18 54 G 0 3 M 56 168 G 0 3 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217154 217924 336 + . gene_id 10 ; sequence Lalb_14616 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217154 217924 . + . KQ414889.1 exonerate:protein2genome:local exon 217154 217924 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217154 217924 336 + . alignment_id 10 ; Query Lalb_14616 ; Align 217154 15 87 ; Align 217241 45 375 ; Align 217622 170 54 ; Align 217679 188 168 ; Align 217850 244 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 327 Query range: 8 -> 243 Target range: 278537 -> 279257 9 : ValLysSerPheAsnAspAspTyrGluAsnAspLeuAsnTyrThrLeuGlyMetCysA : 28 ..!..!||| !:!!... !::.!.!..|||! !! |||!:!:!! !||| !| ThrSerSerThrAspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnA 278538 : ACTTCGTCAACCGATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACC : 278595 29 : rgLeuLeuLeuLysProLeuGlyValTrpThrPheIleTyrAspArgGlySerArgLe : 47 ||! !!!!|||||||||:!!||||||||| !!.!!! ! ! !!! !!!!! !|| rgTrpPheLeuLysProIleGlyValTrpProLeuSerLeu---CysValThrThrLe 278596 : GTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTC---TGCGTGACCACCTT : 278649 48 : uGluArgValLeuSerIleProLeuMetLeuIle<->CysPheSerSerLeuPhePhe : 65 ||||!:!:!! !|||:!: !||| !|||||| |||||| !! ! !|||.!! uGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeu 278650 : GGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTC : 278706 66 : IleIleLeuProSerValTyrAsnMetLeuPheMetGluGluAspLeuGlnAsnIleV : 85 :!::!!! ! !:!!:!!! !!..:!!||| !! ! ||||||.!.!..! : LeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysI 278707 : TTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGA : 278766 86 : alLysLeuLeuGlyProIleSerPheCysMetPheSerThrIleLysTyrCysLeuLe : 104 !!|||:!!:!!||||||:!!|||||||||! !.!.:!!||||||||||||! !:!!|| leLysMetIleGlyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLe 278767 : TCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCT : 278823 105 : uGlyMetLysGlyAsnThrLeuGlyGlnCysIleLeuHisLeuGluArgAspTrpLys : 123 | ! !:::|||..!! !:!!|||:!!|||:!: ! !!:!!...! !||||||... uMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSer 278824 : AATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCT : 278880 124 : MetVal<-><-><->GlnAspProAspHisArgAlaIleMetLeuLysGlnAlaSerT : 140 :!:..! !::... :::...||| |||||| ! ! ...|||!!!! LeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgI 278881 : CTTACACTTTCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAA : 278940 141 : hrSerArgPheLeuIleThrIleCysValGlyPheLeuTyrSerGlyGlyMetSerTy : 159 !.!!|||! !||| ! !.!! !!!.!||||||:!!||||||||||||:!:! !|| leGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTy 278941 : TTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTA : 278997 160 : rHisThrValMetGln<->PheLeuSerLysAspArgThrAsnThrAsnValThrLeu : 177 | !.!!||||||! ! ||| ! !::: ..!! !! ! !|||! !|||:!! rThrAlaValMetProLeuPheAlaValArgThrGluIleIleAspAsnGluThrVal 278998 : CACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTG : 279054 178 : ArgProIleThrTyrProCysPhe<->AsnPheLeuAspThrGlnSerSerProThrT : 196 ||| !! !.!!!:!||| !!:! ..!.!!|||||| !!!::!!!||||||:!!! ArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerP 279055 : AGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGT : 279114 197 : yrGluLeuValPhePheThrHisCysValThrAlaMetValMetGlnThrIleThrTh : 215 :!|||:!!||| |||! !!!.|||:!!.!!|||.!.|||:!: ! :!!:!!|||.. heGluIleValGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrVa 279115 : TCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGT : 279171 216 : rAlaGlyTyrSerLeuAlaAlaThrPheValThrHisMetCysGlyGlnIleGlnIle : 234 !!.!!.!! !|||||| !|||..!||||||! !|||:!:|||||||||.!!::!||| lGlyAlaCysSerLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIle 279172 : TGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATA : 279228 235 : GlnIleSerArgLeuAspAsnLeuIle : 243 ! :!:!!!!:!||||||!!.|||||| LeuValThrLysLeuAspLysLeuIle 279229 : CTTGTGACAAAGCTGGATAAGCTCATC : 279257 vulgar: Lalb_14616 8 243 . KQ414889.1 278537 279257 + 327 M 33 99 G 1 0 M 16 48 G 0 3 M 67 201 G 0 9 M 39 117 G 0 3 M 21 63 G 0 3 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278538 279257 327 + . gene_id 11 ; sequence Lalb_14616 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278538 279257 . + . KQ414889.1 exonerate:protein2genome:local exon 278538 279257 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278538 279257 327 + . alignment_id 11 ; Query Lalb_14616 ; Align 278538 9 99 ; Align 278637 43 48 ; Align 278688 59 201 ; Align 278898 126 117 ; Align 279018 165 63 ; Align 279084 186 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 324 Query range: 20 -> 268 Target range: 266634 -> 267390 21 : AsnTyrThrLeuGlyMetCysArgLeuLeuLeuLysProLeuGlyValTrpThrPheI : 40 :!!|||!:!||| !:!! !|||! !!!!|||||||||:!!|||!.!||| !! : AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProL 266635 : GATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGT : 266692 41 : leTyrAspArgGlySerArgLeuGluArgValLeuSerIleProLeuMetLeuIleCy : 59 !: ...! ! !|||!:!|||||||||:!!:!!||| ! !!|||!!::!!||||| eu---SerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCy 266693 : TG---TCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTG : 266746 60 : sPheSerSerLeuPhePheIleIleLeuProSerValTyrAsnMetLeuPheMetGlu : 78 |!:!!!!|||:!!.!.|||! !:!!:!!|||!!!:!!!:!:!!:!::!!.!. !!!: sTyrCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAsp 266747 : CTACTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGAC : 266803 79 : GluAspLeuGlnAsnIleValLysLeuLeuGlyProIleSerPheCysMetPheSerT : 98 |||..!:!!!::!..! !||||||:!!!!!||||||:!:||| !!! .!. !!.!! GluSerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyG 266804 : GAGAGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAG : 266863 99 : hrIleLysTyrCysLeuLeuGlyMetLysGlyAsnThrLeuGlyGlnCysIleLeuHi : 117 !|||!!.||| ! !||| !:!::::.!!!!. !:!! !! |||:!! !|| lyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHi 266864 : GAATTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCA : 266920 118 : sLeuGluArgAspTrpLysMetValGlnAspProAspHisArgAlaIleMetLeuLys : 136 |:!!:!!! !||||||!:!!!:||| |||!!: !!!:! !:!:||||||||| sMetGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLys 266921 : CATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAG : 266977 137 : GlnAlaSerThrSerArgPheLeuIleThrIleCysValGlyPheLeuTyrSerGlyG : 156 .!.|||!!!! !.!!|||!:!:!! !! !.!!|||!.!!.!|||:!! ! !!!|||! AsnAlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyV 266978 : AACGCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTG : 267037 157 : lyMetSerTyrHisThrValMetGlnPheLeuSerLysAspArgThrAsnThrAsnVa : 175 !:!:.!!||| !..!:!!! ! !||| !! !:!! ! ! ! ! !|||! alLeuGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGl 267038 : TTCTCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGA : 267094 176 : lThrLeuArgProIleThrTyrProCysPhe<-><-><->AsnPheLeuAspThrGln : 191 !||| !! ! ! ! !! |||||| !!..!.:!!! ..!.!. uThrArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAsp 267095 : GACTAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGAT : 267151 192 : SerSerProThrTyrGluLeuValPhePheThrHisCysValThrAlaMetValMetG : 211 !!!||||||||| !!|||:!!|||.!! !!:!!!!.! !|||:!!!.!.!.:!!:!!. ThrSerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValA 267152 : ACCAGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGA : 267211 212 : lnThrIleThrThrAlaGlyTyrSerLeuAlaAlaThrPheValThrHisMetCysGl : 230 !.:!!! !..!..!!.!!.!!:!||||||||||||..!|||!.!.!!||| !||||| snSerSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGl 267212 : ATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGG : 267268 231 : yGlnIleGlnIleGlnIleSerArgLeuAspAsnLeuIleGlyGluHisArgGlu<-> : 249 ||||:!:...:!:! !!!:! ! !!:!! ! .!.!!!:!:..!..! !|||!!: yGlnLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSer 267269 : ACAGCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGC : 267325 250 : <->LysAsnThrPheGlnGluArgIleAlaValIleValArgAspHisAlaGluValL : 267 ||||||..!! ! !!:!:!|||!.!|||:!!|||..! !!||| !..!|||| AsnLysAsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValL 267326 : AATAAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTT : 267385 268 : euArg : 268 ||||| euArg 267386 : TGAGG : 267390 vulgar: Lalb_14616 20 268 . KQ414889.1 266634 267390 + 324 M 20 60 G 1 0 M 144 432 G 0 9 M 63 189 G 0 6 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266635 267390 324 + . gene_id 12 ; sequence Lalb_14616 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266635 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266635 267390 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 266635 267390 324 + . alignment_id 12 ; Query Lalb_14616 ; Align 266635 21 60 ; Align 266695 42 432 ; Align 267136 186 189 ; Align 267331 249 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 306 Query range: 11 -> 268 Target range: 208182 -> 208962 12 : PheAsnAspAspTyrGluAsnAspLeuAsnTyrThrLeuGlyMetCysArgLeuLeuL : 31 .!!||| :!!|||:!!|||||||||!:!!:!!.!:!! !!:!! ! !! ! !| LeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrL 208183 : CTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGT : 208240 32 : euLysProLeuGlyValTrpThrPheIleTyrAspArgGlySerArgLeuGluArgVa : 50 ||||| !:!!||| !||| !! ! |||||| ||| !!||||||!.! euLysIleIleGlySerTrpProArgSerIleAspArg---SerTrpLeuGluAsnSe 208241 : TGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGT---TCCTGGTTAGAGAACAG : 208294 51 : lLeuSerIleProLeuMetLeuIleCysPheSerSerLeuPhePheIleIleLeuPro : 69 !! ! !|||! !|||! :!!:!! !! !!!!! !||| !||||||:!::!!||| rGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIlePro 208295 : CCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCG : 208351 70 : SerValTyrAsnMetLeuPheMetGluGluAspLeuGlnAsnIleValLysLeuLeuG : 89 !!!! ! ! !:!!.!!:!:! ||||||!!! ! :!! !:!!|||:!!! !. ThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysS 208352 : ACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTA : 208411 90 : lyProIleSerPheCysMetPheSerThrIleLysTyrCysLeuLeuGlyMetLysGl : 108 !! !!:!:||||||! !|||.!.:!! !! |||||| :!!:!! !:!::::! erAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGl 208412 : GCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGA : 208468 109 : yAsnThrLeuGlyGlnCysIleLeuHisLeuGluArgAspTrpLysMetValGlnAsp : 127 !..! !:!! !!:!!|||:!! !:!!:!!||| !||||||!:!! |||:!! !! uGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHis 208469 : GGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCAC : 208525 128 : ProAspHisArgAlaIleMetLeuLysGlnAlaSerThrSerArgPheLeuIleThrI : 147 !!!: !!||| !||||||||| ! .!.|||||| !:!!||| ||||||..!| GluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValI 208526 : GAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGA : 208585 148 : leCysValGlyPheLeuTyrSerGlyGlyMetSerTyrHisThrValMetGlnPheLe : 166 |||||! !!.!|||:!!|||.!!||| ::: |||::: !!.!:!!! !.!! leCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuTh 208586 : TATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCAC : 208642 167 : uSerLysAsp<-><->ArgThrAsnThrAsnValThrLeuArgProIleThrTyrPro : 183 ! !! ! ! ..! !..! !|||:!!|||! !||| !:!:..!|||||| rArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrPro 208643 : TCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCT : 208699 184 : CysPheAsnPhe<->LeuAspThrGlnSerSerProThrTyrGluLeuValPhePheT : 202 ! !!!.||| ||||||..!!:!! !||||||..! !!|||:!! !!!:! . ValProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrV 208700 : GTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGG : 208759 203 : hrHisCysValThrAlaMetValMetGlnThrIleThrThrAlaGlyTyrSerLeuAl : 221 .!!!.! :!!:!!!.!.!.||| !!.!.!||||||..!!.!!.!! !.!!||||| alGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAl 208760 : TACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGC : 208816 222 : aAlaThrPheValThrHisMetCysGlyGlnIleGlnIleGlnIleSerArgLeuAsp : 240 |||| !.!!!.!! !||| !|||||||||:!:|||||| !!!:||| !!:!!!!: aAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGlu 208817 : CGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAG : 208873 241 : AsnLeuIle<->GlyGluHisArgGluLysAsnThrPheGlnGluArgIleAlaValI : 259 !!.|||:!! |||..!.!. !|||:!!!!.!.!!!..!.:!!|||:!:||| !| LysLeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnI 208874 : AAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATA : 208933 260 : leValArgAspHisAlaGluValLeuArg : 268 |||||..!.!.|||!.!..!|||:!!!:! leValGluGlnHisValArgValIleLys 208934 : TCGTGGAGCAGCATGTTCGAGTGATCAAG : 208962 vulgar: Lalb_14616 11 268 . KQ414889.1 208182 208962 + 306 M 32 96 G 1 0 M 125 375 G 0 6 M 18 54 G 0 3 M 56 168 G 0 3 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208183 208962 306 + . gene_id 13 ; sequence Lalb_14616 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208183 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208183 208962 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208183 208962 306 + . alignment_id 13 ; Query Lalb_14616 ; Align 208183 12 96 ; Align 208279 45 375 ; Align 208660 170 54 ; Align 208717 188 168 ; Align 208888 244 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 298 Query range: 4 -> 268 Target range: 274332 -> 275136 5 : SerSerAsnGlnValLysSerPheAsnAspAspTyrGluAsnAspLeuAsnTyrThrL : 24 !!!!:!||| !.!! !!:! ! !.!! :!!!:!!!:!:! ! !:!!|||!:!| ThrAsnAsnCysAlaIleAsnValThrAlaAsnPheAspSerLeuSerAspTyrSerL 274333 : ACAAACAACTGTGCGATAAACGTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCT : 274390 25 : euGlyMetCysArgLeuLeuLeuLysProLeuGlyValTrpThrPheIleTyrAspAr : 43 || !:!! !|||! !!!!|||||||||:!!|||!.!||| !! :!! !...! euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpPro---LeuAlaSerPr 274391 : TGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCG---TTAGCCTCGCC : 274444 44 : gGlySerArgLeuGluArgValLeuSerIleProLeuMetLeuIleCysPheSerSer : 62 ! !!!!!:!!!!||||||:!!|||||| !! |||:::...:::|||::!!!!! ! oThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCysPhe 274445 : CACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTGCTTC : 274501 63 : LeuPhePheIleIleLeuProSerValTyrAsnMetLeuPheMetGluGluAspLeuG : 82 :!!.!!! !! !:!!:!!||||||:!!!:!:!!!!::!!.!.:!:!!:|||..!|||! IleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGluSerLeuH 274502 : ATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGTCTCC : 274561 83 : lnAsnIleValLysLeuLeuGlyProIleSerPheCysMetPheSerThrIleLysTy : 101 !. ! :!!|||||||||||||||:!!.!! !!! .!..!!.!! !|||!!.|| isLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTy 274562 : ATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTA : 274618 102 : rCysLeuLeuGlyMetLysGlyAsnThrLeuGlyGlnCysIleLeuHisLeuGluArg : 120 | ! !||| !:!::::.!!!!. !:!! !! |||:!: !|||:!!:!!! ! rThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThr 274619 : CACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACA : 274675 121 : AspTrpLysMetValGlnAspProAspHisArgAlaIleMetLeuLysGlnAlaSerT : 140 ||||||!:!!!:||| |||!!: !!!:! !:!:|||||||||.!.|||!.!! AspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsnAlaLysI 274676 : GATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGA : 274735 141 : hrSerArgPheLeuIleThrIleCysValGlyPheLeuTyrSerGlyGlyMetSerTy : 159 !.!!|||!:!:!! ! !.!!|||!.!!.!|||:!! ! !!!|||! !:!:!!!|| leGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuCysTy 274736 : TCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTA : 274792 160 : rHisThrValMetGlnPheLeuSerLysAspArgThrAsnThrAsnValThrLeuArg : 178 | !..!:!!! !||| !! !:!! ! ! ! !|||! !||| !! ! rCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrArgThr 274793 : TTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACC : 274849 179 : ProIleThrTyrProCysPheAsnPhe<-><-><->LeuAspThrGlnSerSerProT : 195 ! !! !! |||||| !!:! :!!! ..!.!.!!!||||||| ValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThrSerProT 274850 : GTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGA : 274909 196 : hrTyrGluLeuValPhePheThrHisCysValThrAlaMetValMetGlnThrIleTh : 214 || !!|||:!!|||.!! !:!!!!.! !|||:!!!.!.!.:!!:!!.!.:!!! !.! hrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerSerAl 274910 : CGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGC : 274966 215 : rThrAlaGlyTyrSerLeuAlaAlaThrPheValThrHisMetCysGlyGlnIleGln : 233 !..!!.!!.!!:!||||||||||||..!|||!.!.!!||| ! !||||||:!:... aValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSer 274967 : GGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGC : 275023 234 : IleGlnIleSerArgLeuAspAsnLeuIleGlyGluHisArgGlu<-><->LysAsnT : 251 :!:! !!!:! ! !!:!! !.!.!!!:!:..!.!. !|||!!: ||||||. ValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsnLysAsnV 275024 : GTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaaaatg : 275083 252 : hrPheGlnGluArgIleAlaValIleValArgAspHisAlaGluValLeuArg : 268 ..::: .....!|||!.!|||:!!|||..! !!||| !..!||||||||| alTyrPheSerGluIleGlyValValValGluHisHisLeuArgValLeuArg 275084 : tttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTCAGG : 275136 vulgar: Lalb_14616 4 268 . KQ414889.1 274332 275136 + 298 M 34 102 G 1 0 M 148 444 G 0 9 M 61 183 G 0 6 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274333 275136 298 + . gene_id 14 ; sequence Lalb_14616 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274333 275136 . + . KQ414889.1 exonerate:protein2genome:local exon 274333 275136 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 274333 275136 298 + . alignment_id 14 ; Query Lalb_14616 ; Align 274333 5 102 ; Align 274435 40 444 ; Align 274888 188 183 ; Align 275077 249 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 290 Query range: 15 -> 269 Target range: 212854 -> 213625 16 : TyrGluAsnAspLeuAsnTyrThrLeuGlyMetCysArgLeuLeuLeuLysProLeuG : 35 ||||||!!. :::||| :::::: ! ! !|||! !|||||||||||| !| TyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrG 212855 : TACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGG : 212912 36 : lyValTrpThrPheIleTyrAspArgGlySerArgLeuGluArgValLeuSerIlePr : 54 ||:!!||| !! ! ! ..! !! !|||! !:!!|||!:! !:!!:!! ! lyLeuTrpPro---AspLysSerTyrValSerProIleGluLysAsnIleAlaArgLe 212913 : GTTTGTGGCCC---GACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATT : 212966 55 : oLeuMetLeuIleCysPheSerSerLeuPhePheIleIleLeuProSerValTyrAsn : 73 !:!!! !:!!|||!:!.!!! !:!! !!:!:!!:!!:!!|||!!! !! !! uValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyr 212967 : GGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTAC : 213023 74 : MetLeuPheMetGluGluAspLeuGlnAsnIleValLysLeuLeuGlyProIleSerP : 93 :!!!!!.!! ! !|||:::::: ... :!!:!!|||!!!||| !.!!:!!| ValPheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheAlaP 213024 : GTGTTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTGCAT : 213083 94 : heCysMetPheSerThrIleLysTyrCysLeuLeuGlyMetLysGlyAsnThrLeuGl : 112 |||||:!! !:!! ! |||||| !! !||| !:!: ! |||:!! !:!! ! heCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleAr 213084 : TTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCG : 213140 113 : yGlnCysIleLeuHisLeuGluArgAspTrpLysMetValGlnAspProAspHisArg : 131 ! !|||:!! !|||:!!:!! !|||||||||! :!! ! !! !!!: !!!:! gThrCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLys 213141 : TACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAA : 213197 132 : AlaIleMetLeuLysGlnAlaSerThrSerArgPheLeuIleThrIleCysValGlyP : 151 ! !|||||| ! !.!.|||||| !.!!!:! :!!:!:|||||||||!.! !| GluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPheP 213198 : GAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCT : 213257 152 : heLeuTyrSerGlyGlyMetSerTyrHisThrValMetGlnPheLeuSerLysAspAr : 170 ||:!!|||!!!||| !! !! !||| ! !|||:!:! !.!! !:!! ! ! ! heMetTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLysMe 213258 : TCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAAT : 213314 171 : gThr<-><->AsnThrAsnValThrLeuArgProIleThrTyrProCysPheAsnPhe : 187 !..! :!! !|||||||||!!!|||! !!!:..! !||| !! !..||| tValAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSerArgPhe 213315 : GGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTT : 213371 188 : Leu<->AspThrGlnSerSerProThrTyrGluLeuValPhePheThrHisCysValT : 206 :!! |||..!!:!! !||||||..! !!|||:!! !!|||!!.! !!!. !:!!. IleValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleIleA 213372 : ATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAG : 213431 207 : hrAlaMetValMetGlnThrIleThrThrAlaGlyTyrSerLeuAlaAlaThrPheVa : 225 !!!.!:!::!!!!:!!..!!|||.!!..!!.!!.!! !||||||||||||..!|||!. laGlyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPheAl 213432 : CTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGC : 213488 226 : lThrHisMetCysGlyGlnIleGlnIleGlnIleSerArgLeuAspAsnLeuIle<-> : 244 !..!||| |||||||||!!: ||| !!!:||| !!|||!!::!!|||||| aValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAsp 213489 : GGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGAC : 213545 245 : GlyGluHisArgGluLysAsnThrPheGlnGluArgIleAlaValIleValArgAspH : 263 |||..!.!. ! !!..!!.!.! ! .!.!!:||||||||||||||||||!.!.!.| GlyArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleValAsnGlnH 213546 : GGTAGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGC : 213605 264 : isAlaGluValLeuArgPhe : 269 ||!.!..!:!!|||!:!!:: isValArgIleLeuLysTrp 213606 : ATGTGCGGATACTGAAGTGG : 213625 vulgar: Lalb_14616 15 269 . KQ414889.1 212854 213625 + 290 M 23 69 G 1 0 M 132 396 G 0 6 M 17 51 G 0 3 M 55 165 G 0 3 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212855 213625 290 + . gene_id 15 ; sequence Lalb_14616 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212855 213625 . + . KQ414889.1 exonerate:protein2genome:local exon 212855 213625 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212855 213625 290 + . alignment_id 15 ; Query Lalb_14616 ; Align 212855 16 69 ; Align 212924 40 396 ; Align 213326 172 51 ; Align 213380 189 165 ; Align 213548 244 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 255 Query range: 20 -> 268 Target range: 262846 -> 263602 21 : AsnTyrThrLeuGlyMetCysArgLeuLeuLeuLysProLeuGlyValTrpThrPheI : 40 :!!|||!:!||| !!!: !|||! !||||||||||||:!!|||!.!||| !! : AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpPro---L 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCA---C : 262901 41 : leTyrAspArgGlySerArgLeuGluArgValLeuSerIleProLeuMetLeuIleCy : 59 !:! !! ! ! !||||||:!!||||||:!!:!!!!!.!!! !|||!!::!!:!!|| euSerAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCy 262902 : TGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTG : 262958 60 : sPheSerSerLeuPhePheIleIleLeuProSerValTyrAsnMetLeuPheMetGlu : 78 |!:!!!! !:!!.!.! !! !:!!:!!||||||:!! !:!!!!::!!.!. ! sTyrCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAla 262959 : TTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCC : 263015 79 : GluAspLeuGlnAsnIleValLysLeuLeuGlyProIleSerPheCysMetPheSerT : 98 |||:!!!!!!!.! ! :!!:!!:!!|||||||||:!!.!! !! .!. !!.!!! GluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyM 263016 : GAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTA : 263075 99 : hrIleLysTyrCysLeuLeuGlyMetLysGlyAsnThrLeuGlyGlnCysIleLeuHi : 117 !|||!!.||| !! !||| !:!: ! .!!!!. !:!! ! |||:!:! !|| etIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHi 263076 : TGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACA : 263132 118 : sLeuGluArgAspTrpLysMetValGlnAspProAspHisArgAlaIleMetLeuLys : 136 |:!!:!!..!|||||| !!:||| !!!: !!!:! !|||||||||||| sValGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLys 263133 : CGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAG : 263189 137 : GlnAlaSerThrSerArgPheLeuIleThrIleCysValGlyPheLeuTyrSerGlyG : 156 .!.|||!.! !.!!|||!:!:!! !.!! !|||!.! !|||:!! ! !!!.!! AsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerI 263190 : AACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCA : 263249 157 : lyMetSerTyrHisThrValMetGlnPheLeuSerLysAspArgThrAsnThrAsnVa : 175 !|||!!! ! ! !|||! !||| !!!!:!!! ! ! !:!! !|||! leMetCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGl 263250 : TCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGA : 263306 176 : lThr<-><->LeuArgProIleThrTyrProCysPhe<->AsnPheLeuAspThrGln : 191 !||| |||||| !:!! !!! !||| !:! .!..!!:!! ..!.!. uThrArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAsp 263307 : GACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGAC : 263363 192 : SerSerProThrTyrGluLeuValPhePheThrHisCysValThrAlaMetValMetG : 211 !!!!:!|||||| !!|||:!! !!.!! !|||!!.! !:!!:!!!.!.!.:!!:!: ThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValT 263364 : ACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCA : 263423 212 : lnThrIleThrThrAlaGlyTyrSerLeuAlaAlaThrPheValThrHisMetCysGl : 230 .!!! !|||..!!.!!.!!:!.!!:!!.!!|||..!|||!.! !||| ||||| hrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGl 263424 : CCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGG : 263480 231 : yGlnIleGlnIleGlnIleSerArgLeuAspAsnLeuIleGlyGluHisArgGlu<-> : 249 ||||:!:.!.:!: !!!:||| !!:!! .!.!!!:!:..!:!! !|||!!: yGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGlu 263481 : ACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAG : 263537 250 : <->LysAsnThrPheGlnGluArgIleAlaValIleValArgAspHisAlaGluValL : 267 |||||| !!:! ..!|||!.!|||||||||..! !!||| !..!|||| AsnLysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValL 263538 : AATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTC : 263597 268 : euArg : 268 ||||| euArg 263598 : TGAGG : 263602 vulgar: Lalb_14616 20 268 . KQ414889.1 262846 263602 + 255 M 18 54 G 1 0 M 137 411 G 0 6 M 9 27 G 0 3 M 63 189 G 0 6 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 263602 255 + . gene_id 16 ; sequence Lalb_14616 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262847 263602 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263602 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 262847 263602 255 + . alignment_id 16 ; Query Lalb_14616 ; Align 262847 21 54 ; Align 262901 40 411 ; Align 263318 177 27 ; Align 263348 186 189 ; Align 263543 249 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 245 Query range: 301 -> 391 Target range: 291368 -> 292551 302 : GluTrpAlaAsnAsnAspThrValAlaIleLeuThrTyrIleMetLeuLeuValSerP : 321 ||||||! !!:!!:!|||:!!:!!!.!||||||||||||:!!! ||||||..!|||| GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 322 : heThrPheIleIlePheIlePheCysTyrIleGlyGluLeuLeuSerGluGln >>> : 339 ||||||||! !|||.!.||||||||||||:!!|||||||||||| !! !||| heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln++ 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAGgt... : 291482 340 : > Target Intron 1 >>>> CysSerGlnMetGlyProAlaAlaTyrLysIleH : 350 913 bp !!|||:!!!!:!.!! !|||:!!||| ! ! !. ++GlySerGluIleAlaHisAlaSerTyrAspThrG 291483 : ......................agGGTAGTGAAATCGCGCACGCTTCCTACGATACAG : 292426 351 : isTrpTyrAsnLeuSerSerLysAsnSerTyrAspLeuIleLeuLeuCysAlaValAl : 369 !.|||||||||||| !!!!!::!!!.:!! !|||:!!:!!|||:!! !|||:!!.! luTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIleTh 292427 : AATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAAC : 292483 370 : aLeuTyrProProLysLeuSerAlaGlyLysIleMetAspLeuSerIleAsnThrPhe : 388 ! !:!!||| !||||||!!!||||||||||||.!.! !||||||:!:||||||||| rLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPhe 292484 : GAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTT : 292540 389 : GlyThrVal : 391 |||.!!||| GlyAlaVal 292541 : GGCGCTGTA : 292551 vulgar: Lalb_14616 301 391 . KQ414889.1 291368 292551 + 245 M 37 111 5 0 2 I 0 909 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 292551 245 + . gene_id 17 ; sequence Lalb_14616 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292551 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 292551 245 + . alignment_id 17 ; Query Lalb_14616 ; Align 291369 302 111 ; Align 292393 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 233 Query range: 278 -> 391 Target range: 286809 -> 287222 279 : GluIleCysLeuThrGluIleValGluSerThrLeuIleMetCysLeuLeuGluTyrT : 298 !!::!:|||! ! !.!.! !||| !:!!! !:!! !.!. !:!!! !..!! ! AspLeuCysTyrTyrHisThrValMetAlaIleIleAlaPheValMetTyrSerLeuS 286810 : GACTTGTGTTATTACCATACTGTAATGGCAATAATTGCATTCGTCATGTACTCGTTGT : 286867 299 : yrCysLeuMetGluTrpAlaAsnAsnAspThrValAlaIleLeuThrTyrIleMetLe : 317 !!!! !||||||! !.!.!:!!!:|||:!!!.!! :!!|||||| !! !|| erValPhe***GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLe 286868 : CAGTTTTCTAGGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTT : 286924 318 : uLeuValSerPheThrPheIleIlePheIlePheCysTyrIleGlyGluLeuLeuSer : 336 |||||||||||||||||||! !:!!||||||.!!|||||||||||||||:!!|||||| uLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSer 286925 : GCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCC : 286981 337 : GluGln >>>> Target Intron 1 >>>> CysSerGlnMetGlyProAlaAl : 346 |||||| 74 bp |||! !:!!:!:||| !:!!.! GluGln++ ++CysLeuLysValGlyLeuSerTh 286982 : GAACaggt.........................agtGCTTAAAAGTCGGCTTGTCAAC : 287085 347 : aTyrLysIleHisTrpTyrAsnLeuSerSerLysAsnSerTyrAspLeuIleLeuLeu : 365 !|||! !||| !!||||||..!||| !!.!!|||!..:!! ! ! !|||||||||:!! rTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIle 287086 : TTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATA : 287142 366 : CysAlaValAlaLeuTyrProProLysLeuSerAlaGlyLysIleMetAspLeuSerI : 385 ! !||||||:!! !! ! !! !||||||!!!||||||||||||!!:|||||||||: PheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerL 287143 : TTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTT : 287202 386 : leAsnThrPheGlyThrVal : 391 !!!:!!:!||| !!!:!||| euSerSerPheCysSerVal 287203 : TAAGCAGCTTCTGCAGCGTG : 287222 vulgar: Lalb_14616 278 391 . KQ414889.1 286809 287222 + 233 M 60 180 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286810 287222 233 + . gene_id 18 ; sequence Lalb_14616 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286810 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286810 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287222 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287222 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286810 287222 233 + . alignment_id 18 ; Query Lalb_14616 ; Align 286810 279 180 ; Align 287064 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 223 Query range: 12 -> 242 Target range: 194144 -> 194831 13 : AsnAspAspTyrGluAsnAspLeuAsnTyrThrLeuGlyMetCysArgLeuLeuLeuL : 32 |||! !:!!|||:!! ||| !.!.|||.!!:!! !!:!:...!:! !||||||! AsnValAsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuLeuT 194145 : AACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAA : 194202 33 : ysProLeuGlyValTrpThrPheIleTyrAspArgGlySerArgLeuGluArgValLe : 51 !|||:!!|||:!!||| !! ..!! !|||! !! !!!:||||||! hrProIleGlyIleTrpPro---------ArgGluAspSerLeuArgAspArgValAr 194203 : CACCGATCGGTATCTGGCCA---------AGGGAGGATTCTCTTCGCGACAGAGTCCG : 194250 52 : uSerIleProLeuMetLeuIleCysPheSerSerLeuPhePheIleIleLeuProSer : 70 ! !.!! !!! !! !:!: !|||:!!! !:!!! !|||:!!:!::!!||| ! gLeuPheAlaGlnThrGlyValValPheAlaLeuMetCysPheLeuLeuValProHis 194251 : ACTGTTCGCTCAAACTGGCGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCTCAC : 194307 71 : ValTyrAsnMetLeuPheMetGluGluAspLeuGlnAsnIleValLysLeuLeuGlyP : 90 ||| ! !!! ! !||| ||||||||| !!.. !:!!|||:!!:!!!.! ValIleTyrThrTyrPheAspCysGluAspLeuThrArgTyrMetLysValIleAlaA 194308 : GTGATCTACACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGG : 194367 91 : roIleSerPheCysMetPheSerThrIleLysTyrCysLeuLeuGlyMetLysGlyAs : 109 !! ! !||| !!:!!!!.:!!! !||||||!:!!! !:!! !:!!!!. !!!! laGlnValPheSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnArgLy 194368 : CGCAAGTGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAA : 194424 110 : nThrLeuGlyGlnCysIleLeuHisLeuGluArgAspTrpLysMetValGlnAspPro : 128 . !:!! !! |||:!:|||.!.:!!|||! !.!.!::!:! |||:!! ! ! sGluIleArgPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCysGlu 194425 : AGAGATCAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAG : 194481 129 : AspHisArgAlaIleMetLeuLysGlnAlaSerThrSerArgPheLeuIleThrIleC : 148 !!: !!||| !:!:||| !!!. |||!.!! !.!!||||||!!!! !|||:!:! GluAspArgGlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuT 194482 : GAGGATCGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGT : 194541 149 : ysValGlyPheLeuTyrSerGlyGlyMetSerTyrHisThrValMetGlnPheLeuSe : 167 !:!!|||.!!! !|||.!!|||!.!:!! !!||||||! !:!!:!:! .!.:!!|| yrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSe 194542 : ACTTGGGACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTC : 194598 168 : rLysAspArgThr<->AsnThrAsnValThrLeuArgProIleThrTyr<->ProCys : 184 |:!! ! !..! .!. !||| !|||! !! !|||:!: !!||| ! ! rGluArgIleValLysGluAspAsnSerThrGlnIleProLeuProTyrLeuSerAsn 194599 : GGAGAGGATTGTCAAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGCAAC : 194655 185 : PheAsnPheLeuAspThrGlnSerSerProThrTyrGluLeuValPhePheThrHisC : 204 !:! !|||!!!! ! !:!!..!||||||! !||||||:!!..!||| !!:!!!!. TyrValPhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerGlnI 194656 : TATGTTTTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGA : 194715 205 : ysValThrAlaMetValMetGlnThrIleThrThrAlaGlyTyrSerLeuAlaAlaTh : 223 :!!! !::!! :!!!!: !:!!! !.! !!.! !|||||||||!.!||||| leLeuIleSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAlaTh 194716 : TACTGATTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTAC : 194772 224 : rPheValThrHisMetCysGlyGlnIleGlnIleGlnIleSerArgLeuAspAsnLeu : 242 |.!!:!!! !||| |||||| !.!!:!!:!: ! !!!!|||:!!!!:!.!:!! rIleIleMetHisCysCysGlyLeuPheGluValThrSerArgArgMetGluThrIle 194773 : TATTATTATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGATGGAGACTATT : 194829 vulgar: Lalb_14616 12 242 . KQ414889.1 194144 194831 + 223 M 26 78 G 3 0 M 130 390 G 0 3 M 11 33 G 0 3 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194145 194831 223 + . gene_id 19 ; sequence Lalb_14616 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194145 194831 . + . KQ414889.1 exonerate:protein2genome:local exon 194145 194831 . + . insertions 6 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 194145 194831 223 + . alignment_id 19 ; Query Lalb_14616 ; Align 194145 13 78 ; Align 194223 42 390 ; Align 194616 172 33 ; Align 194652 183 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 334 -> 391 Target range: 297632 -> 297803 335 : LeuSerGluGlnCysSerGlnMetGlyProAlaAlaTyrLysIleHisTrpTyrAsnL : 354 :!!||| |||..!..!:!!.!.||| !|||||||||!!.|||.!.|||||||||| ValSerCysGlnAlaGluLysPheGlyAsnAlaAlaTyrAsnIleGluTrpTyrAsnL 297633 : GTTTCTTGTCAGGCTGAAAAATTCGGCAATGCAGCTTATAACATCGAATGGTACAACT : 297690 355 : euSerSerLysAsnSerTyrAspLeuIleLeuLeuCysAlaValAlaLeuTyrProPr : 373 || !! !!!!.!..:!! !||||||:!:|||:!! !!.!:!!||| !!:!||||| euProProAsnArgAlaLeuAspLeuValLeuMetIleGlyIleAlaLysPheProPr 297691 : TACCGCCAAACAGGGCTCTCGATCTGGTGTTAATGATCGGTATAGCAAAATTTCCACC : 297747 374 : oLysLeuSerAlaGlyLysIleMetAspLeuSerIleAsnThrPheGlyThrVal : 391 |!:!|||!!!...|||||||||...|||:::|||||||||||||||.!!.!!||| oArgLeuThrGlyGlyLysIlePheAspIleSerIleAsnThrPheSerAlaVal 297748 : GAGGCTCACAggtggaaaaatattcgatatatCGATAAACACGTTCAGTGCCGTA : 297803 vulgar: Lalb_14616 334 391 . KQ414889.1 297632 297803 + 155 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297633 297803 155 + . gene_id 20 ; sequence Lalb_14616 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297633 297803 . + . KQ414889.1 exonerate:protein2genome:local exon 297633 297803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297633 297803 155 + . alignment_id 20 ; Query Lalb_14616 ; Align 297633 335 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 278 -> 338 Target range: 280022 -> 280202 279 : GluIleCysLeuThrGluIleValGluSerThrLeuIleMetCysLeuLeuGluTyrT : 298 !!::!!|||! ! !.!.|||||| !:!!! !:!! !.!. !:!!! !..!! ! AspLeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerLeuS 280023 : GACTTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGTTGT : 280080 299 : yrCysLeuMetGluTrpAlaAsnAsnAspThrValAlaIleLeuThrTyrIleMetLe : 317 !!!! !||||||! !.!.||||||.!!:!!!.!! !!!||||||:!!|||!! erValPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPh 280081 : CAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTT : 280137 318 : uLeuValSerPheThrPheIleIlePheIlePheCysTyrIleGlyGluLeuLeuSer : 336 !|||:!!|||!!.||||||! !:!!||||||.!!|||||||||||||||:!!|||||| eLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSer 280138 : TCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCC : 280194 337 : GluGln : 338 |||||| GluGln 280195 : GAACag : 280202 vulgar: Lalb_14616 278 338 . KQ414889.1 280022 280202 + 140 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280023 280202 140 + . gene_id 21 ; sequence Lalb_14616 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280023 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280023 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280023 280202 140 + . alignment_id 21 ; Query Lalb_14616 ; Align 280023 279 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 301 -> 338 Target range: 219328 -> 219439 302 : GluTrpAlaAsnAsnAspThrValAlaIleLeuThrTyrIleMetLeuLeuValSerP : 321 |||||| !:::||||||..!..!::! !:!!|||||||||!!:||||||:!!|||. GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 322 : heThrPheIleIlePheIlePheCysTyrIleGlyGluLeuLeuSerGluGln : 338 !.|||||| |||||||||||||||||||||||||||:!!:!!:!!|||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: Lalb_14616 301 338 . KQ414889.1 219328 219439 + 134 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219439 134 + . gene_id 22 ; sequence Lalb_14616 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219439 134 + . alignment_id 22 ; Query Lalb_14616 ; Align 219329 302 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 297 -> 338 Target range: 210651 -> 210774 298 : TyrCysLeuMetGluTrpAlaAsnAsnAspThrValAlaIleLeuThrTyrIleMetL : 317 !:! !||| !||||||! !::!!!.||| !!:!!::!! !||||||||||||:!:| PheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValL 210652 : TTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTAC : 210709 318 : euLeuValSerPheThrPheIleIlePheIlePheCysTyrIleGlyGluLeuLeuSe : 336 |||||..!||| !!||||||! !|||||||||||||||||||||||||||:!!|||:! euLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAl 210710 : TCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGC : 210766 337 : rGluGln : 338 !|||||| aGluGln 210767 : TGAACAg : 210774 vulgar: Lalb_14616 297 338 . KQ414889.1 210651 210774 + 131 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210652 210774 131 + . gene_id 23 ; sequence Lalb_14616 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 210652 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210652 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210652 210774 131 + . alignment_id 23 ; Query Lalb_14616 ; Align 210652 298 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 290 -> 338 Target range: 214596 -> 214740 291 : IleMetCysLeuLeuGluTyrTyrCysLeuMetGluTrpAlaAsnAsnAspThrValA : 310 ||| :::::::::::: ||| |||||| !:::|||:!! !..!. IleSerAsnIleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrT 214597 : atatcaaacatcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAA : 214654 311 : laIleLeuThrTyrIleMetLeuLeuValSerPheThrPheIleIlePheIlePheCy : 329 !!! !:!!||||||:!::!!|||! !:!!|||...|||||| |||||||||||||| hrThrValThrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCy 214655 : CTACAGTAACTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttg : 214711 330 : sTyrIleGlyGluLeuLeuSerGluGln : 338 ||||||||||||||||:!!||||||||| sTyrIleGlyGluLeuValSerGluGln 214712 : ttaCATAGGCGAGCTTGTGTCTGAACAG : 214740 vulgar: Lalb_14616 290 338 . KQ414889.1 214596 214740 + 130 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214597 214740 130 + . gene_id 24 ; sequence Lalb_14616 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214597 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214597 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214597 214740 130 + . alignment_id 24 ; Query Lalb_14616 ; Align 214597 291 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 296 -> 354 Target range: 258249 -> 258423 297 : TyrTyrCysLeuMetGluTrpAlaAsnAsnAspThrValAlaIleLeuThrTyrIleM : 316 :::||| ......||||||:!!!.....||| ::: :::|||.!!| PheTyrTyrPheGlnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheM 258250 : ttttattattttcaggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTA : 258307 317 : etLeuLeuValSerPheThrPheIleIlePheIlePheCysTyrIleGlyGluLeuLe : 335 ||:!!|||:!!|||...:::||| ||||||:::...|||||||||||||||:!!|| etIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLe 258308 : TGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATT : 258364 336 : uSerGluGlnCysSerGlnMetGlyProAlaAlaTyrLysIleHisTrpTyrAsnLeu : 354 |!!!|||||| ! :::::: ... ! :!!||| !::|||||| uThrGluGlnValProGluIle***LeuIleValThrTyrValHisLysTrpAsnLeu 258365 : AACAGAACAGGTACCagagatttaattaattgtcaCATATGTACACAAATGGaacttg : 258421 vulgar: Lalb_14616 296 354 . KQ414889.1 258249 258423 + 126 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258250 258423 126 + . gene_id 25 ; sequence Lalb_14616 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 258250 258423 . + . KQ414889.1 exonerate:protein2genome:local exon 258250 258423 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258250 258423 126 + . alignment_id 25 ; Query Lalb_14616 ; Align 258250 297 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 268 -> 338 Target range: 234524 -> 234914 269 : PheSerLysAspValGluGluGlyLeuArgGluIleCysLeuThrGluIleValGluS : 288 |||! !::!:!!:!!|||.!.! !:!!!.! !|||||||||..!|||:!:|||! !! PheIleArgAsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuValGlyC 234525 : TTTATACGGAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGAT : 234582 289 : erThrLeuIleMetCysLeuLeuGluTyr{Ty} >>>> Target Intron 1 >> : 298 !!||||||! !||||||:!!|||||||||{!!} 180 bp ysThrLeuAsnMetCysMetLeuGluTyr{**}-+ 234583 : GCACGTTGAACATGTGCATGCTCGAGTAT{TA}tt....................... : 234616 299 : >> {r}CysLeuMetGluTrpAlaAsnAsnAspThrValAlaIleLeuThrTyrIle : 315 { }|||:!!:!: ! !.!.!!.... ::: !:!!|||:!! +-{*}CysIleLeuThrSerGlnGluLysSerLysGluLysLeuAlaSerTyrVal 234617 : ..aa{A}TGTATTTTAACTTCTCAGGAAAAgtcgaaggaaaaattagCTTCATACGTC : 234843 316 : MetLeuLeuValSerPheThrPheIleIlePheIlePheCysTyrIleGlyGluLeuL : 335 !!::!!! !||||||.!.|||||| ||||||||||||||||||||||||||| !| IleValTyrValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluThrL 234844 : ATCGTGTACGTGTCCATGACATTtaatatattcatattttgttACATCGGAGAGACGC : 234903 336 : euSerGluGln : 338 ||!!!|||||| euThrGluGln 234904 : TTACAGAGCAG : 234914 vulgar: Lalb_14616 268 338 . KQ414889.1 234524 234914 + 125 M 29 87 S 0 2 5 0 2 I 0 176 3 0 2 S 1 1 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234525 234914 125 + . gene_id 26 ; sequence Lalb_14616 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234525 234613 . + . KQ414889.1 exonerate:protein2genome:local exon 234525 234613 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234614 234615 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 234614 234793 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234792 234793 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 234794 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234794 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234525 234914 125 + . alignment_id 26 ; Query Lalb_14616 ; Align 234525 269 87 ; Align 234795 299 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 296 -> 342 Target range: 261718 -> 261856 297 : TyrTyrCysLeuMetGluTrpAlaAsnAsnAspThrValAlaIleLeuThrTyrIleM : 316 :::::: |||...|||||||||.!..!.|||! ! ! !:!:! !||||||.!!| PhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheM 261719 : ttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCA : 261776 317 : etLeuLeuValSerPheThrPheIleIlePheIlePheCysTyrIleGlyGluLeuLe : 335 ||:!!|||:!!:!!.!! !|||! !:!!||||||.!!|||||||||||||||:!!|| etMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLe 261777 : TGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACT : 261833 336 : uSerGluGlnCysSerGlnMet : 342 |!!!|||||| ..!!!.:!! uThrGluGlnValGlnHisLeu 261834 : AACGGAACAGGTACAACATTTG : 261856 vulgar: Lalb_14616 296 342 . KQ414889.1 261718 261856 + 121 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261719 261856 121 + . gene_id 27 ; sequence Lalb_14616 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 261719 261856 . + . KQ414889.1 exonerate:protein2genome:local exon 261719 261856 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 261719 261856 121 + . alignment_id 27 ; Query Lalb_14616 ; Align 261719 297 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 301 -> 341 Target range: 272836 -> 272956 302 : GluTrpAlaAsnAsnAspThrValAlaIleLeuThrTyrIleMetLeuLeuValSerP : 321 ||||||.!!:!!:!!||| ! !::!:!! !||||||.!!|||:!!|||:!!|||. GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 322 : heThrPheIleIlePheIlePheCysTyrIleGlyGluLeuLeuSerGluGlnCysSe : 340 !.|||||| ||||||||| |||||||||||||||:!!|||!!!|||::! ! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArgValMe 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGGTAAT : 272951 341 : rGln : 341 ||| tGln 272952 : gcaa : 272956 vulgar: Lalb_14616 301 341 . KQ414889.1 272836 272956 + 120 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 272956 120 + . gene_id 28 ; sequence Lalb_14616 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272837 272956 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272956 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 272956 120 + . alignment_id 28 ; Query Lalb_14616 ; Align 272837 302 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 299 -> 338 Target range: 224317 -> 224434 300 : LeuMetGluTrpAlaAsnAsnAspThrValAlaIleLeuThrTyrIleMetLeuLeuV : 319 !!!...||||||::::::::: !! !..!::! :!!||||||.!!!!:||||||: PheGlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuM 224318 : TTTCaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCA : 224375 320 : alSerPheThrPheIleIlePheIlePheCysTyrIleGlyGluLeuLeuSerGluGl : 338 !!|||...|||||| ||||||||||||||||||||||||||||||:!!:!!||||| etSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl 224376 : TGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAca : 224432 339 : n : 338 | n 224433 : g : 224434 vulgar: Lalb_14616 299 338 . KQ414889.1 224317 224434 + 119 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224318 224434 119 + . gene_id 29 ; sequence Lalb_14616 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224318 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224318 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224318 224434 119 + . alignment_id 29 ; Query Lalb_14616 ; Align 224318 300 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 338 -> 391 Target range: 280276 -> 280435 339 : CysSerGlnMetGlyProAlaAlaTyrLysIleHisTrpTyrAsnLeuSerSerLysA : 358 |||! !:!!:!:||| !:!!.!!|||! !||| !!||||||..!||| !!.!!|||! CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysL 280277 : TGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGA : 280334 359 : snSerTyrAspLeuIleLeuLeuCysAlaValAlaLeuTyrProProLysLeuSerAl : 377 !.:!! ! ! !|||||||||:!!! !||||||:!! !! ! !! !||||||!!!|| ysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 280335 : AAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 280391 378 : aGlyLysIleMetAspLeuSerIleAsnThrPheGlyThrVal : 391 ||||||||||!!:|||||||||:!!!:!!:!||| !!!:!||| aGlyLysIleIleAspLeuSerLeuSerSerPheCysSerVal 280392 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTG : 280435 vulgar: Lalb_14616 338 391 . KQ414889.1 280276 280435 + 116 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280277 280435 116 + . gene_id 30 ; sequence Lalb_14616 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280277 280435 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280435 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280277 280435 116 + . alignment_id 30 ; Query Lalb_14616 ; Align 280277 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 301 -> 338 Target range: 277371 -> 277482 302 : GluTrpAlaAsnAsnAspThrValAlaIleLeuThrTyrIleMetLeuLeuValSerP : 321 ||||||:!!:!!!:!|||..! !.!!!!: !|||:!!.!!|||:!!|||:!!|||. GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 322 : heThrPheIleIlePheIlePheCysTyrIleGlyGluLeuLeuSerGluGln : 338 !. ||| |||||| ! ! |||||||||||||||:!!|||!!!|||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAG : 277482 vulgar: Lalb_14616 301 338 . KQ414889.1 277371 277482 + 106 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277482 106 + . gene_id 31 ; sequence Lalb_14616 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277482 106 + . alignment_id 31 ; Query Lalb_14616 ; Align 277372 302 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 299 -> 338 Target range: 264531 -> 264648 300 : LeuMetGluTrpAlaAsnAsnAspThrValAlaIleLeuThrTyrIleMetLeuLeuV : 319 !!!..!||||||! !!:!:!:||| ::: !||||||.!!|||:!!|||: PheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuI 264532 : TTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATACTGA : 264589 320 : alSerPheThrPheIleIlePheIlePheCysTyrIleGlyGluLeuLeuSerGluGl : 338 !!|||.!. ! !! !||||||:!!.!.|||||||||||||||:!!|||!!!||||| leSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGl 264590 : TATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGca : 264646 339 : n : 338 | n 264647 : g : 264648 vulgar: Lalb_14616 299 338 . KQ414889.1 264531 264648 + 102 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264532 264648 102 + . gene_id 32 ; sequence Lalb_14616 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264532 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264532 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264532 264648 102 + . alignment_id 32 ; Query Lalb_14616 ; Align 264532 300 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1097 Query range: 0 -> 362 Target range: 259739 -> 262015 1 : MetIleGluArgGluLeuAspSerSerSerAspTyrSerLeuGlnValAsnArgTrpT : 20 .!.:!!|||! !...!!! !||| !|||||||||||||||||| !!|||||||||! PheValGluThrSerPheThrSerHisSerAspTyrSerLeuGlnPheAsnArgTrpP 259740 : TTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCCAATTTAATCGATGGT : 259797 21 : yrLeuLysSerIleGlyAlaTrpProSerSerSerPheAlaProArgPheGluArgIl : 39 :!|||||| !!||||||||||||||| !!||||||! !.!! !!|||.!!|||!:!|| heLeuLysProIleGlyAlaTrpProProSerSerSerThrThrArgLeuGluLysIl 259798 : TCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCACGACCAGACTCGAGAAGAT : 259854 40 : eValSerValValLeuIleIleIleCysTyrCysSerMetLeuPheThrGlyIlePro : 58 |:!!||||||:!!||||||.!!||||||||| !!!!!!!:||| !!||| !|||||| eIleSerValIleLeuIlePheIleCysTyrSerThrIleLeuValThrLeuIlePro 259855 : CATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATACTGGTCACCCTGATCCCG : 259911 59 : CysIleLeuHisIleLeuLeuGluAspGluAspLeuArgLysLysLeuArgAlaThrG : 78 |||:!!||||||!!:||||||||| ! |||..!||| !! !||| !!:!!.! !| CysValLeuHisMetLeuLeuGluLysGluSerLeuTyrMetLysThrLysValLeuG 259912 : TGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGAAGGTGCTCG : 259971 79 : lyProLeuIleAsnMetPheMetGlySerIleLysTyrSerThrLeuLeuPheArgGl : 97 ||||||||! !:!! !|||:!:|||!!!|||!!.|||!!!|||||||||!!.||||| lyProLeuThrHisTrpPheValGlyCysIleAsnTyrThrThrLeuLeuLeuArgGl 259972 : GTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTGTTGAGAGG : 260028 98 : yAsnGluIleArgAspCysValGluHisIleGlnValAspTrpGlnIleValSerArg : 116 |!..!!:|||! !..!||||||||||||:!::!! !||||||::!|||:!!!!!||| yArgAspIleLeuSerCysValGluHisValGluAsnAspTrpArgIleIleThrArg 260029 : CAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGAATTATAACGAGG : 260085 117 : ValArgHisArgLeuValMetThrSerTyrAlaLysPheGlyArgTyrValSerValP : 136 ! !!:! !!!:! !|||||| !!!!||||||||||||||||||||||||:!!!.!! GluLysAspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgTyrValAlaAlaS 260086 : GAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGATACGTCGCTGCCT : 260145 137 : heCysAlaAlaPheThrGlnLeuGlyValAlaSerTyrCysPheValAsnAlaLeuSe : 155 !||||||||||||..!||| !|||||| !!!!!:!|||!!.|||!..!.!||||| erCysAlaAlaPheValGlnGlyGlyValLeuCysPheCysLeuValThrValLeuSe 260146 : CTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTCACGGTGTTGAG : 260202 156 : rThrArgSerValGlnIleGlyAsnGluThrArgIleValHisValLeuProLeuGlu : 174 ||||..! !:!!|||:!:||||||||||||||||||||||||:!!||||||! !! ! rThrGluValIleGlnValGlyAsnGluThrArgIleValHisLeuLeuProCysAla 260203 : TACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTGCCGTGCGCG : 260259 175 : PheTyrLysLysLeuLeuAsnIleAspGluSerProThrTyrGluIleValPheValS : 194 ! ||||||:!!|||:!!|||:!::!!!!:||||||! ! !!|||||||||.!!||| ValTyrLysGluLeuIleAsnValAsnAspSerProMetAsnGluIleValLeuValV 260260 : GTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGATTGTTCTCGTCG : 260319 195 : erGlnPheIleSerThrSerIleValAsnPheSerSerValGlyAlaPheSerLeuAl : 213 !||||||:!!||| !! !|||||||||! |||!!!|||||| !||||||||||| alGlnPheValSerGlyPheIleValAsnSerSerThrValGlyIlePheSerLeuAl 260320 : TGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTTCAGTCTCGC : 260376 214 : aValThrLeuAlaAlaHisAlaCysGlyGlnLeuAsnIleLeuMetSerArgIleIle : 232 |!.!..!|||.!!||||||||||||||||||||||||:!:||||||..! !!|||! aAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMetGluTrpIleThr 260377 : GGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAATGGATCACG : 260433 233 : GluThrValAsnGlyGluArgAspArgAspAlaLysIleLeuLeuAsnGluThrGlyV : 252 ||| !|||:!!! !..!|||:!!||| ! !||| !! !!!!!!.|||! !|||| GluPheValAspGluSerArgAsnArgLysLysLysAlaProPheLysGluIleGlyV 260434 : GAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTCCTTTCAAGGAGATCGGAG : 260493 253 : alValValGluAsnHisLeuArgIleLeu{Se} >>>> Target Intron 1 >> : 262 ||:!!||||||:!!||||||||| !|||{!!} 257 bp alIleValGluHisHisLeuArgAlaLeu{Th}++ 260494 : TGATTGTCGAACATCATTTGAGAGCACTC{AC}gt....................... : 260527 263 : >> {r}PheIleSerGlnIleGluGluValMetAsnLysIleCysPheThrGluMet : 279 {!}|||||||||!::||||||!!:|||||||||::!||||||||| !|||:!! ++{r}PheIleSerArgIleGluAspValMetAsnArgIleCysPheLeuGluLeu 260528 : ..ag{C}TTCATATCGCGTATCGAGGATGTGATGAACCGGATATGCTTCCTGGAGTTG : 260831 280 : PheHisThrSerLeuCysThrCysMetLeuGlyTyrTyrIleLeuThr >>>> Tar : 296 |||... !!!!||| !! !|||:!:||||||||||||||||||! ! PheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeuMet++ 260832 : TTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATATTCTTATGgt........ : 260884 297 : get Intron 2 >>>> GluTrpAspAspArgAspTyrGlnAsnLeuSerCysTyr : 308 852 bp ||||||! !!!:!:!||| |||||||||||| ||| ++GluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyr 260885 : .................agGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTAT : 261770 309 : PheMetIleLeuPheSerMetThrPheAsnValPheLeuLeuCysTyrIleGlyGlnT : 328 ||||||!!:|||.!.:!!!!: !||||||||||||:!!:!!||||||||||||:!!! PheMetMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluI 261771 : TTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAA : 261830 329 : hrLeuThrGluGln >>>> Target Intron 3 >>>> CysLysLysValGly : 337 !|||||||||||| 81 bp |||..!||||||||| leLeuThrGluGln++ ++CysSerLysValGly 261831 : TACTAACGGAACAGgt.........................agTGCTCGAAAGTTGGT : 261938 338 : GluValValTyrMetThrAsnTrpTyrPheLeuProArgArgCysIleLeuAspLeuA : 357 !!:||||||||||||||||||||||||!:!|||||| !!:! !!||||||||||||! AspValValTyrMetThrAsnTrpTyrTyrLeuProAspLysSerIleLeuAspLeuI 261939 : GACGTTGTTTACATGACAAACTGGTATTATTTACCTGATAAAAGTATCCTTGATTTGA : 261998 358 : rgMetIleIleValArg : 362 !:!!||||||!.!||| leLeuIleIleAlaArg 261999 : TTTTGATCATTGCACGA : 262015 vulgar: Lalb_14617 0 362 . KQ414889.1 259739 262015 + 1097 M 261 783 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259740 262015 1097 + . gene_id 1 ; sequence Lalb_14617 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259740 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259740 260524 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262015 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262015 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259740 262015 1097 + . alignment_id 1 ; Query Lalb_14617 ; Align 259740 1 783 ; Align 260783 263 99 ; Align 261734 296 111 ; Align 261926 333 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 867 Query range: 1 -> 295 Target range: 274353 -> 275309 2 : IleGluArgGluLeuAspSerSerSerAspTyrSerLeuGlnValAsnArgTrpTyrL : 21 :!! !.!.!!!|||||| !||||||||||||||||||:!!|||||||||!:!| ValThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheL 274354 : GTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCT : 274411 22 : euLysSerIleGlyAlaTrpProSerSerSerPheAlaProArgPheGluArgIleVa : 40 ||||| !!|||||||||||||||! !:!!||| !.!! !!!:!||||||||||||:! euLysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLe 274412 : TGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCT : 274468 41 : lSerValValLeuIleIleIleCysTyrCysSerMetLeuPheThrGlyIleProCys : 59 !||| !:::||||||...:::|||||||||! !!!:|||! !|||! !|||||| !! uSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSer 274469 : TTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGC : 274525 60 : IleLeuHisIleLeuLeuGluAspGluAspLeuArgLysLysLeuArgAlaThrGlyP : 79 |||!!!||||||:!!|||! !||||||..!|||!.! !||||||!:! ! !|||| IlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyP 274526 : ATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTC : 274585 80 : roLeuIleAsnMetPheMetGlySerIleLysTyrSerThrLeuLeuPheArgGlyAs : 98 ||||| !:!! !|||!!:|||.!!|||!!.|||!!!|||||||||.!.|||.!!!! roLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLy 274586 : CTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAA : 274642 99 : nGluIleArgAspCysValGluHisIleGlnValAspTrpGlnIleValSerArgVal : 117 .|||||||||! !||||||||||||!!:|||..!||||||::!||||||!!!||| ! sGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgPro 274643 : AGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCG : 274699 118 : ArgHisArgLeuValMetThrSerTyrAlaLysPheGlyArgTyrValSerValPheC : 137 ..! !!!:!! !|||||| !!.! !!||||||.!!||||||||||||:!!:!!|||| GluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheC 274700 : GAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCT : 274759 138 : ysAlaAlaPheThrGlnLeuGlyValAlaSerTyrCysPheValAsnAlaLeuSerTh : 156 |||||||||||! !|||! !|||||| !!!!|||||| ! :!!!..|||!!!!!!! ysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMe 274760 : GTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTAT : 274816 157 : rArgSerValGlnIleGlyAsnGluThrArgIleValHisValLeuProLeuGluPhe : 175 !!:!!!!||||||:!!|||||||||||||||! !||||||:!!||||||! !:!! ! tGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAla 274817 : GCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCT : 274873 176 : TyrLysLysLeuLeuAsnIleAspGluSerProThrTyrGluIleValPheValSerG : 195 |||||||||:!!:!! :!:||| !||||||||| !!|||||||||.!!!.!|||| TyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerG 274874 : TACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGC : 274933 196 : lnPheIleSerThrSerIleValAsnPheSerSerValGlyAlaPheSerLeuAlaVa : 214 |||||:!:||| !! !|||||||||! |||:!!|||||||||||||||||||||!. lnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAl 274934 : AATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGC : 274990 215 : lThrLeuAlaAlaHisAlaCysGlyGlnLeuAsnIleLeuMetSerArgIleIleGlu : 233 !..!!!!||||||||||||! !|||||||||!:!:!:||||||! ! !!|||! !||| aValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGlu 274991 : CGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAG : 275047 234 : ThrValAsnGlyGluArgAspArgAspAlaLysIleLeuLeuAsnGluThrGlyValV : 253 !|||||| !...||||||:::::: ...::: ...::!|||! !||||||| PheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValV 275048 : TTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGG : 275107 254 : alValGluAsnHisLeuArgIleLeu{Se} >>>> Target Intron 1 >>>> : 262 ||||||||:!!|||||||||:!!|||{||} 74 bp alValGluHisHisLeuArgValLeu{Se}++ + 275108 : TTGTCGAACATCATCTGAGGGTACTC{AG}gt.........................a : 275208 263 : {r}PheIleSerGlnIleGluGluValMetAsnLysIleCysPheThrGluMetPhe : 280 {|}||||||:!!!::||||||!!:|||||||||::!|||||||||! !|||:!!||| +{r}PheIleAlaArgIleGluAspValMetAsnArgIleCysPheMetGluLeuPhe 275209 : g{T}TTCATAGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAATTGTTC : 275262 281 : HisThrSerLeuCysThrCysMetLeuGlyTyrTyrIleLeuThr : 295 ! !!!!||| !! !||||||||||||||||||||||||||| LysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleLeuThr 275263 : AAGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTCTCACG : 275309 vulgar: Lalb_14617 1 295 . KQ414889.1 274353 275309 + 867 M 260 780 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274354 275309 867 + . gene_id 2 ; sequence Lalb_14617 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274354 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274354 275135 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275309 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275309 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274354 275309 867 + . alignment_id 2 ; Query Lalb_14617 ; Align 274354 2 780 ; Align 275211 263 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 830 Query range: 0 -> 386 Target range: 236819 -> 238790 1 : MetIleGluArgGluLeuAspSerSerSerAspTyrSerLeuGlnValAsnArgTrpT : 20 :!:! !|||! !.!.:!! !:!!||||||||||||||||||||| !||||||||| ValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpA 236820 : GTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGG : 236877 21 : yrLeuLysSerIleGlyAlaTrpProSerSerSerPheAlaProArgPheGluArgIl : 39 :!!||||||||||||.!!|||||| ..!|||:!! !!!.!.!!||||||! laMetLysSerIleGlyThrTrpPro------GlnPheSerSerAsnLeuGluArgAs 236878 : CGATGAAAAGCATAGGCACATGGCCA------CAGTTCTCGTCGAACCTCGAGAGAAA : 236928 40 : eValSerValValLeuIleIleIleCysTyrCysSerMetLeuPheThrGlyIlePro : 58 !:!!||| !:!!|||! !:!:||||||||| !:!!!!:||||||:!! !|||||| nIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIlePro 236929 : CATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCT : 236985 59 : CysIleLeuHisIleLeuLeuGluAspGluAspLeuArgLysLysLeuArgAlaThrG : 78 ||| ||||||:!!:!!|||||| ! ! ! !!!! !! !|||:!!!:! ! !| CysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuG 236986 : TGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCG : 237045 79 : lyProLeuIleAsnMetPheMetGlySerIleLysTyrSerThrLeuLeuPheArgGl : 97 || !!|||! !:!! ! ! .!. !!! !|||!..|||!!!! !||||||.!.||| ! lySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgAr 237046 : GTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACG : 237102 98 : yAsnGluIleArgAspCysValGluHisIleGlnValAspTrpGlnIleValSerArg : 116 !!!. |||||| !!! ! !!.!.|||!!::!!..!||||||::!! ..!:::||| gLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrThrArg 237103 : TAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGacgaga : 237159 117 : ValArgHisArgLeuValMetThrSerTyrAlaLysPheGlyArgTyrValSerValP : 136 ... ::: |||||| !!.!||||||||||||.!!||||||!.!:!!:!!! LysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleS 237160 : aaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTT : 237219 137 : heCysAlaAlaPheThrGlnLeuGlyValAlaSerTyrCysPheValAsnAlaLeuSe : 155 !|||.!! !|||! !!!. !|||:!! !.!!|||||| !!:!!!..|||! !!! erCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaSerTh 237220 : CTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTCCAC : 237276 156 : rThrArgSerValGlnIleGlyAsnGluThrArgIleValHisValLeuProLeuGlu : 174 !|||! ! !||| !:!!||||||:!!|||! !|||:!!!.!|||||||||||| ! rThrMetValValValValGlyAsnLysThrThrIleLeuArgValLeuProLeuPro 237277 : CACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGCGTGCTGCCCTTACCA : 237333 175 : PheTyrLysLysLeuLeuAsnIleAspGluSerProThrTyrGluIleValPheValS : 194 .!.|||||| !|||||| :!!||| !!:! !!! ! !!!!:|||||| !!:!!| MetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnAspIleValValLeuS 237334 : ATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGACATCGTTGTTTTGT : 237393 195 : erGlnPheIleSerThrSerIleValAsnPheSerSerValGlyAlaPheSerLeuAl : 213 ||||||||:!!||| !! !|||!.!||| !|||:!!:!!.!!!.!.!.||||||.! erGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSerValIleSerLeuTh 237394 : CACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAGTGTTATAAGCCTTAC : 237450 214 : aValThrLeuAlaAlaHisAlaCysGlyGlnLeuAsnIleLeuMetSerArgIleIle : 232 ! !.!!|||.!!:!!||||||! !|||||||||!:!:!::!!|||! ! !||| ! rSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValValMetLeuSerIleGlu 237451 : AAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTTATGTTGTCGATCGAA : 237507 233 : GluThrValAsnGlyGluArgAspArgAspAlaLysIleLeuLeuAsnGluThrGlyV : 252 !!: !|||!:!! !! !||| !|||! ! ! !! !!!!:!!|||! ! !. AspPheValSerGluAlaArgArgArgGlyLysAspAspHisPheAspGluIleProT 237508 : GATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGA : 237567 253 : alValValGluAsnHisLeuArgIleLeu{Se} >>>> Target Intron 1 >> : 262 .!:!!||||||.!.|||||||||:!:|||{!:} 68 bp hrIleValGluGluHisLeuArgValLeu{As}++ 237568 : CAATCGTGGAGGAACATTTGAGAGTGTTG{AA}gt....................... : 237601 263 : >> {r}PheIleSerGlnIleGluGluValMetAsnLysIleCysPheThrGluMet : 279 {!}|||||||||!::||||||! !:!!||||||||| |||||| !|||:!: ++{n}PheIleSerArgIleGluAlaMetMetAsnLysAlaCysPheLeuGluLeu 237602 : ..ag{C}TTCATATCGCGCATAGAGGCAATGATGAACAAAGCGTGTTTCCTGGAGTTA : 237716 280 : PheHisThrSerLeuCysThrCysMetLeuGlyTyrTyrIleLeuThr >>>> Tar : 296 .!.... !! !:!!..!..!||| |||||||||||||||!!!! ! MetArgCysMetIleAlaValCysAlaLeuGlyTyrTyrIlePheMet++ 237717 : ATGAGGTGCATGATAGCTGTATGCGCACTTGGATATTATATATTCATGgt........ : 237769 297 : get Intron 2 >>>> GluTrpAspAspArgAspTyrGlnAsnLeuSerCysTyr : 308 645 bp ||||||! !!:!!!||| !:!!! !|||! ! ||| ++GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyr 237770 : .................agGAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTAC : 238448 309 : PheMetIleLeuPheSerMetThrPheAsnValPheLeuLeuCysTyrIleGlyGlnT : 328 |||:!: !||| !!:!!!!:..!! !|||..!|||:!!||||||||||||.!!:!!! PheValAlaLeuValAlaIleValSerAsnThrPheIleLeuCysTyrIleSerGluA 238449 : TTTGTAGCACTCGTTGCTATTGTTTCTAATACATTTATACTCTGTTATATCAGCGAAA : 238508 329 : hrLeuThrGluGln >>>> Target Intron 3 >>>> CysLysLysValGly : 337 !|||||||||||| 106 bp ||| !||||||||| rgLeuThrGluGln++ ++CysLeuLysValGly 238509 : GGCTGACAGAACAGgt.........................agTGCTTGAAAGTTGGT : 238641 338 : GluValValTyrMetThrAsnTrpTyrPheLeuProArgArgCysIleLeuAspLeuA : 357 ||||||||||||||||||:!!||||||!:!||||||!:!||| ! ||||||||||||! GluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuI 238642 : GAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAA : 238701 358 : rgMetIleIleValArgSerSerValMetIleLysIleThrAlaSerLysMetPheHi : 376 !:!!|||||| !||||||!:!|||:!::!!|||:!!||||||.!!|||:!:!!.|| leLeuIleIleLysArgSerAsnValValValLysValThrAlaGlyLysValLeuHi 238702 : TTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCACCGCTGGAAAAGTATTACA : 238758 377 : sMetSerValTyrThrPheGlyGlnValSer : 386 |||||||:!!||||||||||||.!.|||||| sMetSerLeuTyrThrPheGlyAspValSer 238759 : TATGTCGCTTTACACGTTCGGCGATGTAAGT : 238790 vulgar: Lalb_14617 0 386 . KQ414889.1 236819 238790 + 830 M 28 84 G 2 0 M 231 693 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 33 99 5 0 2 I 0 641 3 0 2 M 37 111 5 0 2 I 0 102 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236820 238790 830 + . gene_id 3 ; sequence Lalb_14617 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 236820 237598 . + . KQ414889.1 exonerate:protein2genome:local exon 236820 237598 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 237599 237600 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 237599 237666 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 237665 237666 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 237667 237766 . + . KQ414889.1 exonerate:protein2genome:local exon 237667 237766 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 237767 237768 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 237767 238411 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 238410 238411 . + . intron_id 1 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 238412 238522 . + . KQ414889.1 exonerate:protein2genome:local exon 238412 238522 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238523 238524 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238523 238628 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 238627 238628 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238629 238790 . + . KQ414889.1 exonerate:protein2genome:local exon 238629 238790 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 236820 238790 830 + . alignment_id 3 ; Query Lalb_14617 ; Align 236820 1 84 ; Align 236904 31 693 ; Align 237668 263 99 ; Align 238412 296 111 ; Align 238629 333 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 800 Query range: 0 -> 261 Target range: 266604 -> 267387 1 : MetIleGluArgGluLeuAspSerSerSerAspTyrSerLeuGlnValAsnArgTrpT : 20 :!:|||||| !.!.|||:!!||| !||||||||||||||||||:!!|||||||||! ValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpP 266605 : GTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCCTGCAATTGAATCGATGGT : 266662 21 : yrLeuLysSerIleGlyAlaTrpProSerSerSerPheAlaProArgPheGluArgIl : 39 :!|||||| !!||||||||||||||| !!! !|||.!!.!! !!!:!.!!|||||||| heLeuLysProIleGlyAlaTrpProProLeuSerLeuThrSerLysLeuGluArgIl 266663 : TCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCACATCTAAACTCGAACGAAT : 266719 40 : eValSerValValLeuIleIleIleCysTyrCysSerMetLeuPheThrGlyIlePro : 58 ||||||| !!.!||||||:!!|||||||||||||||!!:|||||||||! !|||||| eValSerTyrAlaLeuIleValIleCysTyrCysSerIleLeuPheThrValIlePro 266720 : CGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATACTGTTCACCGTAATCCCT : 266776 59 : CysIleLeuHisIleLeuLeuGluAspGluAspLeuArgLysLysLeuArgAlaThrG : 78 |||:!:!!!|||:!!:!!||||||||||||..!:!!|||! !|||:!!!:!!.! !| CysLeuPheHisLeuValLeuGluAspGluSerIleArgThrLysValLysValPheG 266777 : TGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTACGAAAGTGAAGGTGTTCG : 266836 79 : lyProLeuIleAsnMetPheMetGlySerIleLysTyrSerThrLeuLeuPheArgGl : 97 ||||||||! !:!! !|||:!:|||.!!|||!!.|||!!!|||||||||.!.|||.! lyProLeuSerHisTrpPheValGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSe 266837 : GTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACACCACACTGTTGCTACGCAG : 266893 98 : yAsnGluIleArgAspCysValGluHisIleGlnValAspTrpGlnIleValSerArg : 116 !!!.|||||||||! !||||||||||||!!:|||..!||||||::!||||||!!!||| rLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArg 266894 : CAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGATTGGAGGATCGTGACCAGA : 266950 117 : ValArgHisArgLeuValMetThrSerTyrAlaLysPheGlyArgTyrValSerValP : 136 !..! !!!:!! !|||||| !!.! !!|||!:!.!!|||||||||:!!:!!:!!| ProGluAspLysGlnValMetLeuLysAsnAlaArgIleGlyArgTyrIleAlaIleP 266951 : CCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCGGTCGTTACATTGCTATAT : 267010 137 : heCysAlaAlaPheThrGlnLeuGlyValAlaSerTyrCysPheValAsnAlaLeuSe : 155 ||||||||||||||! !|||! !|||||| !.!!|||||| ! :!!!..|||!!!!! heCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCysValIleThrAlaPheTh 267011 : TCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGTGATAACGGCGTTCAC : 267067 156 : rThrArgSerValGlnIleGlyAsnGluThrArgIleValHisValLeuProLeuGlu : 174 !! !!:!!!!|||:!!:!!||||||||||||||||||||||||:!!||||||! !! ! rMetGlnThrValGluValGlyAsnGluThrArgIleValHisLeuLeuProCysAla 267068 : TATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTACATCTGTTGCCCTGTGCA : 267124 175 : PheTyrLysLysLeuLeuAsnIleAspGluSerProThrTyrGluIleValPheValS : 194 !!|||||||||:!!:!! :!!||| ||||||||| !!|||||||||.!!|||| ValTyrLysLysMetIleAlaValAspThrSerProThrAsnGluIleValLeuValS 267125 : GTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGAACGAGATTGTCCTTGTTT : 267184 195 : erGlnPheIleSerThrSerIleValAsnPheSerSerValGlyAlaPheSerLeuAl : 213 ||||||||:!!||| !! !|||||||||! ||| !|||||||||||||||||||| erGlnPheValSerGlyPheIleValAsnSerSerValValGlyAlaPheSerLeuAl 267185 : CACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCGGTGCTTTCAGCCTTGC : 267241 214 : aValThrLeuAlaAlaHisAlaCysGlyGlnLeuAsnIleLeuMetSerArgIleIle : 232 |!.!..!!!!||||||||||||||||||||||||!:!:!:||||||! ! !!|||! aAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerValLeuMetMetTrpIleLys 267242 : CGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTGATGATGTGGATCAAG : 267298 233 : GluThrValAsnGlyGluArgAspArgAspAlaLysIleLeuLeuAsnGluThrGlyV : 252 ||| !|||||| !!...||||||!!!:!! !!!.:!!! !!!!:!!:!!! !|||| GluPheValAsnArgSerArgAspSerAsnLysAsnValCysPheAspLysIleGlyV 267299 : GAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTTGCTTCGATAAGATTGGCG : 267358 253 : alValValGluAsnHisLeuArgIleLeu : 261 |||||||||||:!!|||||||||:!!||| alValValGluHisHisLeuArgValLeu 267359 : TGGTCGTTGAACATCATCTGAGAGTTTTG : 267387 vulgar: Lalb_14617 0 261 . KQ414889.1 266604 267387 + 800 M 261 783 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266605 267387 800 + . gene_id 4 ; sequence Lalb_14617 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266605 267387 . + . KQ414889.1 exonerate:protein2genome:local exon 266605 267387 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266605 267387 800 + . alignment_id 4 ; Query Lalb_14617 ; Align 266605 1 783 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 773 Query range: 0 -> 294 Target range: 256619 -> 257577 1 : MetIleGluArgGluLeuAspSerSerSerAspTyrSerLeuGlnValAsnArgTrpT : 20 :!!:!!:!!! !.!.!!! ! |||! !||||||||||||||||||:!!|||||||||! ValValLysThrAsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpP 256620 : GTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGT : 256677 21 : yrLeuLysSerIleGlyAlaTrpProSerSerSerPheAlaProArgPheGluArgIl : 39 :!|||||| !!||||||||||||||| !!||||||! !.!! !!! !.!!||||||! heLeuLysProIleGlyAlaTrpProProSerSerSerThrThrThrLeuGluArgAs 256678 : TCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCGAAA : 256734 40 : eValSerValValLeuIleIleIleCysTyrCysSerMetLeuPheThrGlyIlePro : 58 !||||||:!!||||||! !|||:!!|||||| !!|||!!:||||||||| !|||||| nValSerIleValLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIlePro 256735 : CGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCC : 256791 59 : CysIleLeuHisIleLeuLeuGluAspGluAspLeuArgLysLysLeuArgAlaThrG : 78 |||:!:||||||:!!!!!|||!!:|||!!:..!!!! |||:::::: | CysLeuLeuHisValPheLeuAspAspAspSerPheTyrMetLysValLysAsnPheG 256792 : TGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcg : 256851 79 : lyProLeuIleAsnMetPheMetGlySerIleLysTyrSerThrLeuLeuPheArgGl : 97 |||||:!!! !:!! !.!!!!:.!!!!! !!!.|||!!! !||||||!!.!:!|| lyProMetSerHisTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGl 256852 : gtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGG : 256908 98 : yAsnGluIleArgAspCysValGluHisIleGlnValAspTrpGlnIleValSerArg : 116 |!!.!!:|||||| !!|||||||||||||||:!!..!||||||::!!!:|||!!!||| yLysAspIleArgTyrCysValGluHisIleGluThrAspTrpArgMetValArgArg 256909 : AAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGG : 256965 117 : ValArgHisArgLeuValMetThrSerTyrAlaLysPheGlyArgTyrValSerValP : 136 ! !!:! !!!:!! !||||||! !!.! !!|||!:!|||||||||||||||:!!..!| GluLysAspGlnGlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrP 256966 : GAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACAT : 257025 137 : heCysAlaAlaPheThrGlnLeuGlyValAlaSerTyrCysPheValAsnAlaLeuSe : 155 |||||||||||.!!! !||| !|||||| ::: !:::||||||!: heCysAlaAlaIleMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAs 257026 : TTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAA : 257082 156 : rThrArgSerValGlnIleGlyAsnGluThrArgIleValHisValLeuProLeuGlu : 174 !|||..!! !:!!!!.:!:||||||||||||! !||||||!..|||||||||:!! nThrGluIleIleHisValGlyAsnGluThrThrIleValArgValLeuProValThr 257083 : CACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACC : 257139 175 : PheTyrLysLysLeuLeuAsnIleAspGluSerProThrTyrGluIleValPheValS : 194 ! ||||||||||||||||||:!!|||:!!||||||||| !!||||||||| !! !!! ValTyrLysLysLeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheM 257140 : GTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTA : 257199 195 : erGlnPheIleSerThrSerIleValAsnPheSerSerValGlyAlaPheSerLeuAl : 213 !||| ! |||:!!! !|||!.!!.! !|||!!!|||.!! !||||||||||| etGlnThrTrpSerSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAl 257200 : TGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGC : 257256 214 : aValThrLeuAlaAlaHisAlaCysGlyGlnLeuAsnIleLeuMetSerArgIleIle : 232 |!.!..!!!!|||.!!||||||! !|||||||||!.!:!:||||||||| !!|||! ! aAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThr 257257 : GGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACA : 257313 233 : GluThrValAsnGlyGluArgAspArgAspAlaLysIleLeuLeuAsnGluThrGlyV : 252 ||| !||||||! !..!|||:!!|||::: ... ..!!!.:!!! !|||| GluPheValAsnGluSerArgAsnArgGluLysThrPheProPheLysGlnIleGlyV 257314 : GAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCG : 257373 253 : alValValGluAsnHisLeuArgIleLeu{Se} >>>> Target Intron 1 >> : 262 ||:!!||||||:!!|||||||||:!:|||{||} 76 bp alIleValGluHisHisLeuArgValLeu{Se}++ 257374 : TGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt....................... : 257407 263 : >> {r}PheIleSerGlnIleGluGluValMetAsnLysIleCysPheThrGluMet : 279 {|}||||||||| ! ||||||||||||||||||::!||||||||| !|||:!! ++{r}PheIleSerTyrIleGluGluValMetAsnArgIleCysPheLeuGluLeu 257408 : ..ag{T}TTCATATCATATATCGAGGAAGTGATGAACCGAATATGTTTTTTAGAGTTG : 257530 280 : PheHisThrSerLeuCysThrCysMetLeuGlyTyrTyrIleLeu : 294 |||... !!!!|||..!! !|||||||||||||||||||||||| PheArgCysThrLeuAlaIleCysMetLeuGlyTyrTyrIleLeu 257531 : TTTAGATGCACGCTGGCTATATGCATGCTGGGATACTACATTCTT : 257577 vulgar: Lalb_14617 0 294 . KQ414889.1 256619 257577 + 773 M 261 783 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256620 257577 773 + . gene_id 5 ; sequence Lalb_14617 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256620 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256620 257404 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257577 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257577 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256620 257577 773 + . alignment_id 5 ; Query Lalb_14617 ; Align 256620 1 783 ; Align 257482 263 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 657 Query range: 7 -> 261 Target range: 262837 -> 263599 8 : SerSerSerAspTyrSerLeuGlnValAsnArgTrpTyrLeuLysSerIleGlyAlaT : 27 ||| !||||||||||||||||||:!!||||||||| |||||| !!|||||||||| SerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaT 262838 : AGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCAT : 262895 28 : rpProSerSerSerPheAlaProArgPheGluArgIleValSerValValLeuIleIl : 46 ||||| !|||:!!! ! !!|||.!.|||||||||:!!!!! !!:!!||||||:! rpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleVa 262896 : GGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGT : 262952 47 : eIleCysTyrCysSerMetLeuPheThrGlyIleProCysIleLeuHisIleLeuLeu : 65 !:!!||||||||| !!!:|||! !|||! !||||||! !||||||||||||:!!||| lValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeu 262953 : CGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTA : 263009 66 : GluAspGluAspLeuArgLysLysLeuArgAlaThrGlyProLeuIleAsnMetPheM : 85 |||! !|||:!!!!!!.!! !||||||!:!!.! !||||||||| !.!. !|||: GluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheV 263010 : GAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCG : 263069 86 : etGlySerIleLysTyrSerThrLeuLeuPheArgGlyAsnGluIleArgAspCysVa : 104 !:|||! !|||!!.|||!!! !||||||.!!!.!.!!!!.!!:|||!:!! !||||| alGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysVa 263070 : TCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGT : 263126 105 : lGluHisIleGlnValAspTrpGlnIleValSerArgValArgHisArgLeuValMet : 123 |:!!|||:!:|||! !|||||| ||||||!!!|||:!!..! !!!:!! !:!!||| lGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMet 263127 : GCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATG : 263183 124 : ThrSerTyrAlaLysPheGlyArgTyrValSerValPheCysAlaAlaPheThrGlnL : 143 !!.! !!||||||!:!||||||||||||:!!!.!! !|||||| !|||! !||| LeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnT 263184 : CTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAA : 263243 144 : euGlyValAlaSerTyrCysPheValAsnAlaLeuSerThrArgSerValGlnIleGl : 162 !.!!:!! !!!! ! |||.!.|||!..|||!!!!!!|||!:! !:!!:!! !|| hrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGl 263244 : CGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGG : 263300 163 : yAsnGluThrArgIleValHisValLeuProLeuGluPheTyrLysLysLeuLeuAsn : 181 ||||||||||||||||:!!!.!:!!||||||! ! ! ! ||||||:!!:!!:!! yAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLysGluIleIlePro 263301 : TAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCA : 263357 182 : IleAspGluSerProThrTyrGluIleValPheValSerGlnPheIleSerThrSerI : 201 :!!||| !!:!|||||| !!|||||| !!.!!!.!!!!||||||:!:||| !! !| ValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheI 263358 : GTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCA : 263417 202 : leValAsnPheSerSerValGlyAlaPheSerLeuAlaValThrLeuAlaAlaHisAl : 220 |||||!.! !!!!!!||||||||||||.!!:!!.!!!.!..!!!!|||!.!||||| leValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAl 263418 : TCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGC : 263474 221 : aCysGlyGlnLeuAsnIleLeuMetSerArgIleIleGluThrValAsnGlyGluArg : 239 ||||||||||||||||:!:||||||||| !!|||! ||| !|||||| !...||| aCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArg 263475 : TTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGG : 263531 240 : AspArgAspAlaLysIleLeuLeuAsnGluThrGlyValValValGluAsnHisLeuA : 259 |||..!:!! !!!.:!!! !!!!!.!|||! !||||||:!!||||||:!!||||||| AspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuA 263532 : GATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGA : 263591 260 : rgIleLeu : 261 ||:!!||| rgValLeu 263592 : GAGTTCTG : 263599 vulgar: Lalb_14617 7 261 . KQ414889.1 262837 263599 + 657 M 254 762 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262838 263599 657 + . gene_id 6 ; sequence Lalb_14617 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262838 263599 . + . KQ414889.1 exonerate:protein2genome:local exon 262838 263599 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262838 263599 657 + . alignment_id 6 ; Query Lalb_14617 ; Align 262838 8 762 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 571 Query range: 10 -> 387 Target range: 212869 -> 215028 11 : AspTyrSerLeuGlnValAsnArgTrpTyrLeuLysSerIleGlyAlaTrpProSerS : 30 ::: |||::: ! !||||||||| !|||||| !!! ||| !||||||..!! AsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspL 212870 : aatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACA : 212927 31 : erSerPheAlaProArgPheGluArgIleValSerValValLeuIleIleIleCysTy : 49 .!|||!:!!.! !!! !.!!|||!:!! !:!!:!! !:!!:!!! !! !:!!||||| ysSerTyrValSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTy 212928 : AGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTA : 212984 50 : rCysSerMetLeuPheThrGlyIleProCysIleLeuHisIleLeuLeuGluAspGlu : 68 | !!! !!!: !!:! !! !|||||||||! !|||:!!:!:!!!|||!!:! ||| rGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGlu 212985 : CGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgag : 213041 69 : AspLeuArgLysLysLeuArgAlaThrGlyProLeuIleAsnMetPheMetGlySerI : 88 :::::: |||::::!!..! ! !||| !!!! ! ! ! !.! ! AsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuT 213042 : aatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGT : 213101 89 : leLysTyrSerThrLeuLeuPheArgGlyAsnGluIleArgAspCysValGluHisIl : 107 |||||| !:!!|||:!!.!!!.!|||:!!!!:|||||| ||||||||||||!! rpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMe 213102 : GGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATAT : 213158 108 : eGlnValAspTrpGlnIleValSerArgValArgHisArgLeuValMetThrSerTyr : 126 ::!! !||||||:!!! !:!!!!!!.!! !..! !!!:! !:!!|||.!!! ! !! tLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsn 213159 : GAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAAC : 213215 127 : AlaLysPheGlyArgTyrValSerValPheCysAlaAlaPheThrGlnLeuGlyValA : 146 |||!..||||||!:! :!! !..!.!!|||||| !|||! ! ! !||| !!. AlaSerPheGlyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheT 213216 : GCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCA : 213275 147 : laSerTyrCysPheValAsnAlaLeuSerThrArgSerValGlnIleGlyAsnGluTh : 165 !!! !|||! !.!!||| !!:!!|||.!! !!.!:!! ! ! !:!! !. hrPheTyrPheLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAs 213276 : CGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAA : 213332 166 : rArgIleValHisValLeuProLeuGluPheTyrLysLysLeuLeuAsnIleAspGlu : 184 ! !! ! !!... !:!! !:!! !!! !:! :!!:!!:!!:!! ! nValThrPheArgGlnMetValValProValSerArgPheIleValAspValArgTyr 213333 : CGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATAC : 213389 185 : SerProThrTyrGluIleValPheValSerGlnPheIleSerThrSerIleValAsnP : 204 ||||||..! !!|||||| !!|||:!!! !|||.!!|||:!! ! !:!::!!:!! SerProValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisA 213390 : AGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATG : 213449 205 : heSerSerValGlyAlaPheSerLeuAlaValThrLeuAlaAlaHisAlaCysGlyGl : 223 !! !:!!|||! !|||! !|||||||||!.!..!!!!|||!.!|||||||||||||| laIleAlaValValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGl 213450 : CTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACA : 213506 224 : nLeuAsnIleLeuMetSerArgIleIleGluThrValAsnGlyGluArgAspArgAsp : 242 |:!!..!|||||||||||| !!:!: !.!. !:!!:!!|||..!..!|||! ! nMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGlyArgGluAspMet--- 213507 : GATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGTAGAGAGGATATG--- : 213563 243 : AlaLysIleLeuLeuAsnGluThrGlyValValValGluAsnHisLeuArgIleLeu{ : 262 ::!|||! !:!! !:!!..!! !!.!|||:!!|||.!..!.|||:!!|||||||||{ SerLysAsnValAspAspArgIleAlaValIleValAsnGlnHisValArgIleLeu{ 213564 : AGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTG{ : 213620 263 : Se} >>>> Target Intron 1 >>>> {r}PheIleSerGlnIleGluGluVa : 270 !.} 840 bp {!}|||:!!..!! :!:|||:!!!. Ly}++ ++{s}PheLeuGluLeuValGluLysAl 213621 : AA}gt.........................ag{A}TTCTTAGAGCTCGTGGAGAAAGC : 214484 271 : lMetAsnLysIleCysPheThrGluMetPheHisThrSerLeuCysThrCysMetLeu : 289 !:!:...:!!:!!! !|||.!!|||:!:!!. !!!!:!! ! !|||:!::!! aLeuArgGlnValSerPheAlaGluLeuLeuValCysThrValAsnLeuCysLeuVal 214485 : ACTTCGGCAAGTATCTTTCGCTGAATTATTAGTATGCACGGTGAATCTCTGTCTCGTT : 214541 290 : GlyTyrTyrIleLeuThr >>>> Target Intron 2 >>>> GluTrpAspAs : 299 ||||||||||||:!!||| 68 bp ||||||:!!.. GlyTyrTyrIleIleThr++ ++GluTrpAsnSe 214542 : GGATATTACATAATAACGgt.........................aggAATGGAATTC : 214639 300 : pArgAspTyrGlnAsnLeuSerCysTyrPheMetIleLeuPheSerMetThrPheAsn : 318 .!.!:!!! !!.! ! ! !||| ! :!!:!:! !.!!|||:::||||||||| rAsnAsnLeuThrThrThrValThrTyrValValLeuTyrIleSerLeuThrPheAsn 214640 : GAACAATTTAACAACTACAGTAACTTACGTGGTGTTGTATATCTCTCtcactttcaat : 214696 319 : ValPheLeuLeuCysTyrIleGlyGlnThrLeuThrGluGln >>>> Target In : 333 :::|||:::...||||||||||||:!! !:!!:!!|||||| 123 IlePheIlePheCysTyrIleGlyGluLeuValSerGluGln++ 214697 : attttcatattttgttaCATAGGCGAGCTTGTGTCTGAACAGgt.............. : 214743 334 : tron 3 >>>> CysLysLysValGlyGluValValTyrMetThrAsnTrpTyrPhe : 347 bp ||||||||||||||||||||| !||||||! !.!.|||||| ++CysLysLysValGlyGluValSerTyrMetIleGluTrpTyrArg 214744 : ...........agTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACCGA : 214906 348 : LeuProArgArgCysIleLeuAspLeuArgMetIleIleValArgSerSerValMetI : 367 |||||| !!!.! ! ||| !! !! !:!!|||!!:!.!! !|||!:! ! : LeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSerV 214907 : TTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATCCG : 214966 368 : leLysIleThrAlaSerLysMetPheHisMetSerValTyrThrPheGlyGlnValSe : 386 !!|||.!!||||||.!!!!.||| ! .!.:!!|||:!! !||||||.!!...||||| alLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerValSe 214967 : TCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTAAG : 215023 387 : rMet : 387 |!!: rIle 215024 : TATC : 215028 vulgar: Lalb_14617 10 387 . KQ414889.1 212869 215028 + 571 M 231 693 G 1 0 M 19 57 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 M 33 99 5 0 2 I 0 64 3 0 2 M 37 111 5 0 2 I 0 119 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212870 215028 571 + . gene_id 7 ; sequence Lalb_14617 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212870 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 212870 213621 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215028 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215028 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212870 215028 571 + . alignment_id 7 ; Query Lalb_14617 ; Align 212870 11 693 ; Align 213563 243 57 ; Align 214463 263 99 ; Align 214630 296 111 ; Align 214864 333 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 503 Query range: 6 -> 341 Target range: 284508 -> 287016 7 : AspSerSerSerAspTyrSerLeuGlnValAsnArgTrpTyrLeuLysSerIleGlyA : 26 |||!!!..!!!! ||||||:!!|||:!!|||||||||!:!|||||| !!||||||! AspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyV 284509 : GACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCG : 284566 27 : laTrpProSerSerSerPheAlaProArgPheGluArgIleValSerValValLeuIl : 45 .!|||||| !||| !! !!.! !!! !!!.|||!:!||| !|||||||||||| alTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAl 284567 : TATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGC : 284623 46 : eIleIleCysTyrCysSerMetLeuPheThrGlyIleProCysIleLeuHisIleLeu : 64 :!!||| !!! !! ! !!!: !||| ! !:!!|||||| !||| !! !:!! aLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrVal 284624 : GTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTG : 284680 65 : LeuGluAspGlu<->AspLeuArgLysLysLeuArgAlaThrGlyProLeuIleAsnM : 83 |||!!: ! |||||| !! !|||:!!!:! !! !|||||||||! ! ! LeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheC 284681 : CTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCT : 284740 84 : etPheMetGlySerIleLysTyrSerThrLeuLeuPheArgGlyAsnGluIleArgAs : 102 .!.|||!.!:!!|||||||||! !! !|||:!!! ||||||..!:!!||| !!.! ysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGl 284741 : GCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCA : 284797 103 : pCysValGluHisIleGlnValAspTrpGlnIleVal<-><-><->SerArgValArg : 118 .||||||:!! !!|||!::!.!||||||...:!!..! |||::: ... nCysValLysAspIleArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGlu 284798 : ATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagag : 284854 119 : HisArgLeuValMetThrSerTyrAlaLysPheGlyArgTyrValSerValPheCysA : 138 ...||| :::|||! !..! !|||!:!.!!||||||! !:!!:!!:!!||||||| GluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysA 284855 : gagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCG : 284914 139 : laAlaPheThrGlnLeuGlyValAlaSerTyrCysPheValAsnAlaLeuSerThrAr : 157 ||!.!|||! ! ! ! !|||! ! !! !||| ! |||! !!|||!!!||| laGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysThrVa 284915 : CCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGT : 284971 158 : gSerValGlnIleGlyAsnGluThrArgIleValHisValLeuProLeuGluPheTyr : 176 ! !!..!:!!||| ! !!!:!.!..!! !|||... !! ! !!!!! !.!!||| lArgThrGluIle---IleAspAsnGluThrValArgSerGlnAlaPheProIleTyr 284972 : ACGCACGGAGATC---ATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTAT : 285025 177 : LysLysLeuLeuAsnIleAspGluSerProThrTyrGluIleValPheValSerGlnP : 196 ::: ||||||:!! ! ||||||:!!!:!||||||||| !!! !|||! ArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnC 285026 : CGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAAT : 285085 197 : heIleSerThrSerIleValAsnPheSerSerValGlyAlaPheSerLeuAlaValTh : 215 !:!::!!.!!! !:!!:!! !!! !!!!|||||||||! !|||||||||!.!.. ysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaVa 285086 : GCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGT : 285142 216 : rLeuAlaAlaHisAlaCysGlyGlnLeuAsnIleLeuMetSerArgIleIleGluThr : 234 !!!!!.! !|||!.!|||||||||!!!!..||||||:!!!!!!:!:!: !:!! ! lPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeu 285143 : GTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTC : 285199 235 : ValAsnGlyGluArgAspArgAspAlaLysIleLeuLeuAsnGlu<->ThrGlyValV : 253 |||:!!|||! !!:!! ||| ! !.! !! ! !! !.!.:!! !|||! !: ValAspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspI 285200 : GTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATA : 285259 254 : alValGluAsnHisLeuArgIleLeu{Se} >>>> Target Intron 1 >>>> : 262 !!:!!|||:!!||||||!:!||||||{.!} 1411 bp leIleGluHisHisLeuLysIleLeu{Gl}++ + 285260 : TCATCGAGCATCATCTGAAGATACTG{GG}gt.........................a : 286697 263 : {r}PheIleSerGlnIleGluGluValMetAsnLysIleCysPheThrGluMetPhe : 280 {!}||||||||||||||||||! !:!!:!:|||:!!|||||||||..!|||:!!.!! +{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValIle 286698 : g{T}TTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATT : 286751 281 : HisThrSerLeuCysThrCysMetLeuGlyTyrTyrIleLeuThr >>>> Target : 296 ! !!!!||| !! !|||.!.||||||||||||:!!|||||| 8 GlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeuThr++ 286752 : GGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTACTGACGgt........... : 286801 297 : Intron 2 >>>> GluTrpAspAspArgAspTyrGlnAsnLeuSerCysTyrPhe : 309 0 bp ||||||!!:.!.!!!!!: ! !... !! ! |||! ! ++GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCys 286802 : ..............agGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGC : 286918 310 : MetIleLeuPheSerMetThrPheAsnValPheLeuLeuCysTyrIleGlyGlnThrL : 329 ! !:!:||| ! |||.!.|||||||||||||||:!!|||||||||||||||:!!! !| ThrLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleL 286919 : ACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTC : 286978 330 : euThrGluGlnCysLysLysValGlyGluValValTyr : 341 ||:!!|||||| ::: .....!:!!||| euSerGluGlnValPhePheIleThrSerThrIleTyr 286979 : TCTCCGAACaggtatttttcattacttcaACGATCTAT : 287016 vulgar: Lalb_14617 6 341 . KQ414889.1 284508 287016 + 503 M 62 186 G 0 3 M 46 138 G 0 9 M 47 141 G 1 0 M 87 261 G 0 3 M 12 36 S 0 2 5 0 2 I 0 1407 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284509 287016 503 + . gene_id 8 ; sequence Lalb_14617 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284509 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284509 285287 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286698 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 287016 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 287016 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284509 287016 503 + . alignment_id 8 ; Query Lalb_14617 ; Align 284509 7 186 ; Align 284698 69 138 ; Align 284845 115 141 ; Align 284986 163 261 ; Align 285250 250 36 ; Align 286700 263 99 ; Align 286879 296 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 486 Query range: 10 -> 265 Target range: 232456 -> 233218 11 : AspTyrSerLeuGlnValAsnArgTrpTyrLeuLysSerIleGlyAlaTrpProSerS : 30 !!:||||||:!!|||||||||||||||!:!|||! ! !!!!:|||||||||||| !! GluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgV 232457 : GAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTG : 232514 31 : erSerPheAlaProArgPheGluArgIleValSerValValLeuIleIleIleCysTy : 49 !!!! .!! !!||| !:!!!:!:!!:!!:!! !:!!|||! !:!!! !|||:! alThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHi 232515 : TTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCA : 232571 50 : rCysSerMetLeuPheThrGlyIleProCysIleLeuHisIleLeuLeuGluAspGlu : 68 !! ! !|||:!!! !:!! !:!!|||||||||||| !||||||!!!|||||| ! sSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThr 232572 : TTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACG : 232628 69 : AspLeuArgLysLysLeuArgAlaThrGlyProLeuIleAsnMetPheMetGlySerI : 88 ..!|||..!:!!!:!:!!!:!:!!! !||||||:!!! !:!!.!..!.||||||..!: SerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluL 232629 : AGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAAT : 232688 89 : leLysTyrSerThrLeuLeuPheArgGlyAsnGluIleArgAspCysValGluHisIl : 107 !:!!.|||!!! !|||||| !:!!.!|||!!:|||! ! !!|||||||||!!.:! euAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnVa 232689 : TGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGT : 232745 108 : eGlnValAspTrpGlnIleValSerArgValArgHisArgLeuValMetThrSerTyr : 126 ::!! !||||||!:!! !|||!.!!:! ! !|||||| !:!!||| !!.! !! lLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsn 232746 : GAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAAC : 232802 127 : AlaLysPheGlyArgTyrValSerValPheCysAlaAlaPheThrGlnLeuGlyValA : 146 ||||||.!!||||||! :!!:!! !.!!..!||| !! !! !!!. !||||||! AlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValG 232803 : GCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCG : 232862 147 : laSerTyrCysPheValAsnAlaLeuSerThrArgSerValGlnIleGlyAsnGluTh : 165 .!||| !! .!.|||!..!.!||| !!! !!!!!!! !! ! :!:|||||||||!: lySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSe 232863 : GCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAG : 232919 166 : rArgIleValHisValLeuProLeuGluPheTyrLysLysLeuLeuAsnIleAspGlu : 184 ! ! :!!:!! !||||||! ! !||||||! !||||||:!!:!!! ! rTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPhe 232920 : TTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTC : 232976 185 : SerProThrTyrGluIleValPheValSerGlnPheIleSerThrSerIleValAsnP : 204 ||||||||| !!||||||:!!|||||| !|||! !:!!||| !! !|||||||||! SerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnS 232977 : AGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACT : 233036 205 : heSerSerValGlyAlaPheSerLeuAlaValThrLeuAlaAlaHisAlaCysGlyGl : 223 ! !!!!|||||||||! !.!!|||!.!!.!..!|||||| !|||||||||||||| erValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGl 233037 : CCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACA : 233093 224 : nLeuAsnIleLeuMetSerArgIleIleGluThrValAsnGlyGluArgAspArgAsp : 242 |||||||:!::!!||||||!:!:!: !!!: !|||:!!!.! !:!! !:!!!: nLeuAsnValValMetSerLysLeuAspAspLeuValAspAla---LysGlyGlnGlu 233094 : GCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCG---AAAGGGCAGGAG : 233147 243 : AlaLysIleLeuLeuAsnGluThrGlyValValValGluAsnHisLeuArgIleLeuS : 262 ! !!:!:!! !! !!..:!! !||| !!:!!||||||:!!|||||||||! !|||! GluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeuA 233148 : GAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTAA : 233207 263 : erPheIleSer : 265 !!!:!:!:||| rgTyrLeuSer 233208 : GGTATTTGTCT : 233218 vulgar: Lalb_14617 10 265 . KQ414889.1 232456 233218 + 486 M 227 681 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232457 233218 486 + . gene_id 9 ; sequence Lalb_14617 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232457 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232457 233218 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 232457 233218 486 + . alignment_id 9 ; Query Lalb_14617 ; Align 232457 11 681 ; Align 233138 239 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 363 Query range: 2 -> 264 Target range: 217147 -> 217930 3 : GluArgGluLeuAspSerSerSerAspTyrSerLeuGlnValAsnArgTrpTyrLeuL : 22 !!: !||| :::...::: ::: |||:!!||| !|||||||||! |||| AspTyrGluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuL 217148 : GACTACGAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGA : 217205 23 : ysSerIleGlyAlaTrpProSerSerSerPheAlaProArgPheGluArgIleValSe : 41 || !!!!:||| !||||||!:!||| !! !.!! !!|||! !..!!:!|||:!!! ysProMetGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTy 217206 : AACCGATGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTA : 217262 42 : rValValLeuIleIleIleCysTyrCysSerMetLeuPheThrGlyIleProCysIle : 60 ! !:!!:!!! ! !:!!|||||| !!! !!!: !||| ! !:!!|||||| ! rLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSer 217263 : CAAACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCC : 217319 61 : LeuHisIleLeuLeuGluAspGluAspLeuArgLysLysLeuArgAlaThrGlyProL : 80 :!!:!!:!:!!!||||||! !||||||||| ! ! ||||||!:! ! !||||||| MetTyrValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProL 217320 : ATGTACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGT : 217379 81 : euIleAsnMetPheMetGlySerIleLysTyrSerThrLeuLeuPheArgGlyAsnGl : 99 ||||| ! ! |||!.!! !:!!||||||! !:!!|||:!! !!!.! ! !! euIlePheCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAs 217380 : TGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGA : 217436 100 : uIleArgAspCysValGluHisIleGlnValAspTrpGlnIleValSerArgValArg : 118 :||||||!!:||||||..!...|||:!! !||||||::!! !|||!!! !!! !!:! pIleArgGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLys 217437 : CATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAA : 217493 119 : HisArgLeuValMetThrSerTyrAlaLysPheGlyArgTyrValSerValPheCysA : 138 !!||| !!.!|||! ! ! !!|||!!.||||||||| ! :!! !:!!.!!|||. AspArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysT 217494 : GACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTA : 217553 139 : laAlaPheThrGlnLeuGlyValAlaSerTyrCysPheValAsnAlaLeuSerThrAr : 157 !! !|||! ! ! !||| ... ||| ..!!.!! !!:!!|||..! ! hrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGl 217554 : CCTTCTTCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGG : 217610 158 : gSerValGlnIleGlyAsnGluThrArgIleValHisValLeuProLeuGluPheTyr : 176 !!!!:!!! ! ! !|||! !!.!! !! ! !! ! !||| !!!! ||| yArgIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThr 217611 : GAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACG : 217667 177 : LysLysLeuLeuAsnIleAspGluSerProThrTyrGluIleValPheValSerGlnP : 196 ||| ! :!!:!!:!!! ! ! ! !!!|||||| !!|||||||||||| !! !|||! LysTyrIleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnL 217668 : AAGTATATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAAT : 217727 197 : heIleSerThrSerIleValAsnPheSerSerValGlyAlaPheSerLeuAlaValTh : 215 !.|||:!! !:!!:!::!!:!! ! !!!! !!.!|||! !|||||||||!.!.! euIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAl 217728 : TGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGC : 217784 216 : rLeuAlaAlaHisAlaCysGlyGlnLeuAsnIleLeuMetSerArgIleIleGluThr : 234 !!!!|||!.!|||||||||||||||:!!.!.:!:||||||!:! !!:!: !.!. ! aPheAlaValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeu 217785 : TTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTA : 217841 235 : ValAsnGlyGluArgAspArgAspAlaLysIleLeuLeuAsnGluThrGlyValValV : 254 :!!:!!|||..! !|||! ! ::! ! ! !:!! !..!..!! !!.! !:!!| IleAspGlyArgAlaAspMet---SerAspThrValAspGlyArgIleAlaSerIleV 217842 : ATCGACGGTAGAGCGGATATG---AGCGATACTGTGGATGGTAGAATCGCGAGCATCG : 217898 255 : alGluAsnHisLeuArgIleLeuSerPheIle : 264 ||....!.|||:!!|||||||||!.!! !:!! alSerGlnHisValArgIleLeuLysCysVal 217899 : TCAGTCAACACGTTCGGATATTAAAGTGTGTA : 217930 vulgar: Lalb_14617 2 264 . KQ414889.1 217147 217930 + 363 M 239 717 G 1 0 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217148 217930 363 + . gene_id 10 ; sequence Lalb_14617 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217148 217930 . + . KQ414889.1 exonerate:protein2genome:local exon 217148 217930 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217148 217930 363 + . alignment_id 10 ; Query Lalb_14617 ; Align 217148 3 717 ; Align 217865 243 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 355 Query range: 1 -> 264 Target range: 221348 -> 222134 2 : IleGluArgGluLeuAspSerSerSerAspTyrSerLeuGlnValAsnArgTrpTyrL : 21 :!!||| !!!:! ! ! !!!!:! ! ! ! |||:!!|||:!!!:!|||||| !| ValGluTyrAspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleL 221349 : GTTGAATACGATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCT : 221406 22 : euLysSerIleGlyAlaTrpProSerSerSerPheAlaProArgPheGluArgIleVa : 40 ||||| !!||||||!.!||||||!:!|||:!! ! ! !!! ! ! |||||| !:! euLysProIleGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLe 221407 : TGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCT : 221463 41 : lSerValValLeuIleIleIleCysTyrCysSerMetLeuPheThrGlyIleProCys : 59 !! ! !:!!:!!! !:!!:!!|||||| !! !!!: !||| ! !:!!|||||| uTyrTrpLeuIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCys 221464 : CTACTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGC : 221520 60 : IleLeuHisIleLeuLeuGluAspGluAspLeuArgLysLysLeuArgAlaThrGlyP : 79 ! !|||:!!:!::!!||||||! ||||||:!! !!!.!:!:!!!:! ! !|||| SerLeuTyrValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyP 221521 : AGCCTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTC : 221580 80 : roLeuIleAsnMetPheMetGlySerIleLysTyrSerThrLeuLeuPheArgGlyAs : 98 |||||! ! ! ! |||!.!! !:!!|||||| ! !|||:!!.!! !! !|| roLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAs 221581 : CGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAA : 221637 99 : nGluIleArgAspCysValGluHisIleGlnValAspTrpGlnIleValSerArgVal : 117 |!!:||||||!!:|||:!!|||!.!|||:!! !||||||:!!! !:!!!!! ! ! nAspIleArgGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSer 221638 : CGACATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCC : 221694 118 : ArgHisArgLeuValMetThrSerTyrAlaLysPheGlyArgTyrValSerValPheC : 137 !:! !!!:! !:!!|||! !..! !!|||! ||||||||| :!!! !:!!.!!| LysAspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleC 221695 : AAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCT : 221754 138 : ysAlaAlaPheThrGlnLeuGlyValAlaSerTyrCysPheValAsnAlaLeuSerTh : 156 ||.!! !|||! ! ! !||| ... ||| ...!.!! !!!!!|||.. ysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerVa 221755 : GCACATTTTTCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGT : 221811 157 : rArgSerValGlnIleGlyAsnGluThrArgIleValHisValLeuProLeuGluPhe : 175 ! !!!.!:!!! !:!! ... !:!! !!!! ||| lGlyLysIleProAlaGlnAspValAsnValThrPheIleProMetValPheProPhe 221812 : GGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTC : 221868 176 : TyrLysLysLeuLeuAsnIleAspGluSerProThrTyrGluIleValPheValSerG : 195 ! !:! :!!:!!:!!! ! ! ||||||..! !!||||||:!!||| ! !| SerArgPheIleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuG 221869 : TCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTC : 221928 196 : lnPheIleSerThrSerIleValAsnPheSerSerValGlyAlaPheSerLeuAlaVa : 214 ||.!!!!::!! !:!!:!::!!:!! !! !!!! !!.!|||! !||||||!.!!. lnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAl 221929 : AAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGC : 221985 215 : lThrLeuAlaAlaHisAlaCysGlyGlnLeuAsnIleLeuMetSerArgIleIleGlu : 233 !! !!!!|||!.!|||||||||||||||:!!.!.:!:||||||||| !!:!:! !.!. aMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHis 221986 : TATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACAT : 222042 234 : ThrValAsnGlyGluArgAspArgAspAlaLysIleLeuLeuAsnGluThrGlyValV : 253 !:!!||||||..! !|||! ! ..!!!.! !:!! !!....!! !!.! !: LeuIleAsnGlyArgAlaAspMet---CysAsnAsnValAspArgArgIleAlaLysI 222043 : TTGATCAACGGCCGGGCGGATATG---TGTAACAACGTGGATAGGAGAATAGCGAAGA : 222099 254 : alValGluAsnHisLeuArgIleLeuSerPheIle : 264 !!|||.!..!.|||:!!|||||||||..!!:!:!! leValAsnGlnHisValArgIleLeuGlnTyrVal 222100 : TTGTGAATCAACACGTTCGAATATTGCAGTATGTA : 222134 vulgar: Lalb_14617 1 264 . KQ414889.1 221348 222134 + 355 M 240 720 G 1 0 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221349 222134 355 + . gene_id 11 ; sequence Lalb_14617 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221349 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221349 222134 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221349 222134 355 + . alignment_id 11 ; Query Lalb_14617 ; Align 221349 2 720 ; Align 222069 243 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 353 Query range: 2 -> 267 Target range: 226903 -> 227695 3 : GluArgGluLeuAspSerSerSerAspTyrSerLeuGlnValAsnArgTrpTyrLeuL : 22 |||!.!!!:! !.!...!! !! !:!! |||:!!|||:!!||||||||| |||| GluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuL 226904 : GAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGA : 226961 23 : ysSerIleGlyAlaTrpProSerSerSerPheAlaProArgPheGluArgIleValSe : 41 || !!:!!||| !|||||||||||| !! ::! !!|||.!.! !||| ! !!|| ysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSe 226962 : AACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTC : 227018 42 : rValValLeuIleIleIleCysTyrCysSerMetLeuPheThrGlyIleProCysIle : 60 | !:!!:!! !.!!:!!||||||... !||| !||| ! !:!! !! !! ! rTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGly 227019 : CTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGC : 227075 61 : LeuHisIleLeuLeuGluAspGluAspLeuArgLysLysLeuArgAlaThrGlyProL : 80 |||:!!:!::!!||||||! :!!! ! ! !!!.! !|||!:! !! !||||||: LeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProM 227076 : TTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGA : 227135 81 : euIleAsnMetPheMetGlySerIleLysTyrSerThrLeuLeuPheArgGlyAsnGl : 99 !! ! !.!. |||..! !:!!|||||||||! !||| !|||!.!! !:!!!! etSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAs 227136 : TGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGA : 227192 100 : uIleArgAspCysValGluHisIleGlnValAspTrpGlnIleValSerArgValArg : 118 :|||! !!!:|||||||||!..|||:!! !||||||:!!! !:!!!!! !:!!..! pIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGlu 227193 : CATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAG : 227249 119 : HisArgLeuValMetThrSerTyrAlaLysPheGlyArgTyrValSerValPheCysA : 138 !!||| !||||||..!!!!|||||| ! !:!|||||| ! :!!! !..!.!!|||. AspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysT 227250 : GACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCA : 227309 139 : laAlaPheThrGlnLeuGlyValAlaSerTyrCysPheValAsnAlaLeuSerThrAr : 157 !! !|||..! ... ... ::: .!!||| !!:!!!:!.!! ! hrPhePheValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGl 227310 : CGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGG : 227366 158 : gSerValGlnIleGlyAsnGluThrArgIleValHisValLeuProLeuGluPheTyr : 176 !|||||| !! ! !:!!! !!.!!.!! ! ! ! !:!!|||!!! !||| ySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPhePro 227367 : AAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCA : 227423 177 : LysLysLeuLeuAsnIleAspGluSerProThrTyrGluIleValPheValSerGlnP : 196 |||! :!! !:!!:!! ! ! |||||| ! !!|||||| !!||| ! !|||| LysIleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnP 227424 : AAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAAT : 227483 197 : heIleSerThrSerIleValAsnPheSerSerValGlyAlaPheSerLeuAlaValTh : 215 ||:!!!!! !! !:!::!!:!! ! !!!! !!.!|||! !|||:!!|||!.! heValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLe 227484 : TTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCT : 227540 216 : rLeuAlaAlaHisAlaCysGlyGlnLeuAsnIleLeuMetSerArgIleIleGluThr : 234 !||||||!.!|||||||||||||||:!!.!.:!:|||:!!||| !!:!: !.!. ! uLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeu 227541 : GCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTG : 227597 235 : ValAsnGlyGluArgAspArgAspAlaLysIleLeuLeuAsnGluThrGlyValValV : 254 :!!:!!|||..! !|||! ! ::!|||! !||| !:!!..!! !!.! !:!!| IleAspGlyArgAlaAspMet---SerLysThrLeuAspAspArgIleAlaSerIleV 227598 : ATCGACGGCAGAGCGGATATG---AGCAAAACACTGGATGATAGAATCGCTAGCATCG : 227654 255 : alGluAsnHisLeuArgIleLeuSerPheIleSerGlnIle : 267 || :!!|||:!!|||||||||!.!! !:!!!!! ||| alThrHisHisValArgIleLeuLysCysValThrCysIle 227655 : TCACTCACCACGTTCGAATATTGAAGTGTGTAACGTGTATC : 227695 vulgar: Lalb_14617 2 267 . KQ414889.1 226903 227695 + 353 M 239 717 G 1 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226904 227695 353 + . gene_id 12 ; sequence Lalb_14617 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226904 227695 . + . KQ414889.1 exonerate:protein2genome:local exon 226904 227695 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226904 227695 353 + . alignment_id 12 ; Query Lalb_14617 ; Align 226904 3 717 ; Align 227621 243 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 336 Query range: 295 -> 410 Target range: 272836 -> 273251 296 : GluTrpAspAspArgAspTyrGlnAsnLeuSerCysTyrPheMetIleLeuPheSerM : 315 |||||| !|||!.!|||!:!|||!:!|||!!! |||||||||||||||.!.|||| GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 316 : etThrPheAsnValPheLeuLeuCysTyrIleGlyGlnThrLeuThrGluGln >>> : 333 |||||||||||:::|||:::::!||||||||||||:!!! !|||||||||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 334 : > Target Intron 1 >>>> CysLysLysValGlyGluValValTyrMetThrA : 344 70 bp |||||||||:::|||||||||||||||||||||| ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 345 : snTrpTyrPheLeuProArgArgCysIleLeuAspLeuArgMetIleIleValArgSe : 363 ||||||||!:!|||||| !!!:! !||||||||||||! !:!!|||||| !|||!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 364 : rSerValMetIleLysIleThrAlaSerLysMetPheHisMetSerValTyrThrPhe : 382 !||||||:!!|||||||||||||||.!!!:!!!: !!! !|||||||||||||||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 383 : GlyGlnValSerMetSerTyrHisTrpAsnLysProAsnTyrHisThrGlyMetAlaA : 402 |||.!.||| ... ::: ::: !!!.|||||| ! ! |||! GlyAspValArgSerGlnLeuPhePheLeuArgGluLysTyrHisCysPro***AlaA 273166 : GGCGATGTACgttctcaattatttttcctaCGTGAAAAGTATCATTGTCCCTAAGCAA : 273225 403 : rgLeuLeuGluLeuTyrGluAsnPhe : 410 .!|||! !:!!|||::: ...||| snLeu***GlnLeuPheAlaLysPhe 273226 : ATTTATGACAGctctttgcaaaattt : 273251 vulgar: Lalb_14617 295 410 . KQ414889.1 272836 273251 + 336 M 37 111 5 0 2 I 0 66 3 0 2 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273251 336 + . gene_id 13 ; sequence Lalb_14617 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273251 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273251 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273251 336 + . alignment_id 13 ; Query Lalb_14617 ; Align 272837 296 111 ; Align 273018 333 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 321 Query range: 0 -> 261 Target range: 208179 -> 208959 1 : MetIleGluArgGluLeuAspSerSerSerAspTyrSerLeuGlnValAsnArgTrpT : 20 .!.:!!.!.|||.!.! ! ! !:!..! !..!!:!!:!:!!!:::!!||| !||| PheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpT 208180 : TTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGA : 208237 21 : yrLeuLysSerIleGlyAlaTrpProSerSerSerPheAlaProArgPheGluArgIl : 39 ||||||! !||||||:!!||||||!!!|||! ! ! ! !! !!!!.|||!.!! hrLeuLysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSe 208238 : CGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAG : 208294 40 : eValSerValValLeuIleIleIleCysTyrCysSerMetLeuPheThrGlyIlePro : 58 ! ! !:!!:!!|||! !:!!:!! !!:!!|||! !:!: !|||! !! !|||||| rGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIlePro 208295 : CCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCG : 208351 59 : CysIleLeuHisIleLeuLeuGluAspGluAspLeuArgLysLysLeuArgAlaThrG : 78 ! !:!! ! :!!|||! !! !||||||!!! ! ! :!!|||!:! ! !. ThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysS 208352 : ACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTA : 208411 79 : lyProLeuIleAsnMetPheMetGlySerIleLysTyrSerThrLeuLeuPheArgGl : 97 !! !!|||! ! !.!..!.|||!.!! !! |||||| !! !:!! ! !!|||! erAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGl 208412 : GCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGA : 208468 98 : yAsnGluIleArgAspCysValGluHisIleGlnValAspTrpGlnIleValSerArg : 116 !..!!!:|||||| ! |||||||||:!!:!!:!!!.!||||||::!! !|||..!!.! uGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHis 208469 : GGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCAC : 208525 117 : ValArgHisArgLeuValMetThrSerTyrAlaLysPheGlyArgTyrValSerValP : 136 ! !..! !!||| !:!!||| !..! !!|||!..|||!.!||| ! :!!! !|||. GluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValI 208526 : GAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGA : 208585 137 : heCysAlaAlaPheThrGlnLeuGlyValAlaSerTyrCysPheValAsnAlaLeuSe : 155 !.|||!.!||||||! ! ! !|||||| ||| .!!!.! !!|||!! leCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuTh 208586 : TATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCAC : 208642 156 : rThrArgSerValGlnIleGlyAsnGluThrArgIleValHisValLeuProLeuGlu : 174 ! ! !!.!||| ! !..!! !.! !! !... !||| !! ! rArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrPro 208643 : TCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCT : 208699 175 : PheTyrLysLysLeuLeuAsnIleAspGluSerProThrTyrGluIleValPheValS : 194 !! !||| :!!|||:!!:!! ! ||||||..! !!|||||| !!!:!..! ValProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrV 208700 : GTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGG : 208759 195 : erGlnPheIleSerThrSerIleValAsnPheSerSerValGlyAlaPheSerLeuAl : 213 !|||!!.:!:||| !! !:!!!.!:!! !! !!!!|||||||||! !.!!||||| alGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAl 208760 : TACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGC : 208816 214 : aValThrLeuAlaAlaHisAlaCysGlyGlnLeuAsnIleLeuMetSerArgIleIle : 232 |!.! !|||||| !||||||||||||||||||.!.|||||||||||| !!!!: aAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGlu 208817 : CGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAG : 208873 233 : GluThrValAsnGlyGluArgAspArgAspAlaLysIleLeuLeuAsnGluThrGlyV : 252 :!! !|||:!!|||..!..!|||..!!!: |||! !||| !.!...! !!.! LysLeuValAspGlyArgGluAspGluGlu---LysAsnLeuAspGlnArgLeuAlaA 208874 : AAGTTGGTCGATGGACGGGAGGACGAGGAG---AAGAATTTGGATCAGAGGTTGGCTA : 208930 253 : alValValGluAsnHisLeuArgIleLeu : 261 !:!!||||||.!.|||:!!|||:!::!! snIleValGluGlnHisValArgValIle 208931 : ATATCGTGGAGCAGCATGTTCGAGTGATC : 208959 vulgar: Lalb_14617 0 261 . KQ414889.1 208179 208959 + 321 M 242 726 G 1 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208180 208959 321 + . gene_id 14 ; sequence Lalb_14617 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208180 208959 . + . KQ414889.1 exonerate:protein2genome:local exon 208180 208959 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208180 208959 321 + . alignment_id 14 ; Query Lalb_14617 ; Align 208180 1 726 ; Align 208906 244 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 308 Query range: 11 -> 261 Target range: 278576 -> 279338 12 : TyrSerLeuGlnValAsnArgTrpTyrLeuLysSerIleGlyAlaTrpProSerSerS : 31 ||||||:!!|||:!!|||||||||!:!|||||| !!||||||!.!|||||| !||| TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 32 : erPheAlaProArgPheGluArgIleValSerValValLeuIleIleIleCysTyrCy : 50 !! !!.! !!! !!!.|||!:!||| !|||||||||||| :!!||| !!! !! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 51 : sSerMetLeuPheThrGlyIleProCysIleLeuHisIleLeuLeuGluAspGlu<-> : 69 ! !!!: !||| ! !:!!|||||| !||| !! !:!!|||!!: ! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 70 : AspLeuArgLysLysLeuArgAlaThrGlyProLeuIleAsnMetPheMetGlySerI : 88 |||||| !! !|||:!!!:! !! !|||||||||! ! ! |||!.!!!!| AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 89 : leLysTyrSerThrLeuLeuPheArgGlyAsnGluIleArgAspCysValGluHisIl : 107 ||||||||! !! !|||:!!! ||||||..!:!!||| !! ! ||||||.!. !!|| leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 108 : eGlnValAspTrpGlnIleValSerArgValArg<-><-><->HisArgLeuValMet : 123 |!::..!||||||...:!!..! ! ! !||| ...||| :::||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 124 : ThrSerTyrAlaLysPheGlyArgTyrValSerValPheCysAlaAlaPheThrGlnL : 143 ! !..! !|||!:!.!!||||||! !:!!:!!:!!||| !!|||!.!|||! ! ! ! ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 144 : euGlyValAlaSerTyrCysPheValAsnAlaLeuSerThrArgSerValGlnIleGl : 162 !|||! !!.!! !||| ! !|||! !!|||! !.!! ! !!..!:!!||| erGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIle-- 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATC-- : 279039 163 : yAsnGluThrArgIleValHisValLeuProLeuGluPheTyrLysLysLeuLeuAsn : 181 ! !!!:!.!..!! |||... !! ! !!!!! !.!!|||::: ||||||:!! -IleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAsp 279040 : -ATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGAT : 279093 182 : IleAspGluSerProThrTyrGluIleValPheValSerGlnPheIleSerThrSerI : 201 ! ||||||:!!!:!||||||||| !!! !|||! !:!::!!.!!! !: ProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheV 279094 : CCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCG : 279153 202 : leValAsnPheSerSerValGlyAlaPheSerLeuAlaValThrLeuAlaAlaHisAl : 220 !!:!! !!! !!!!|||||||||! !|||||| !!.!..!!!!!.! !|||!. alLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisVa 279154 : TTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGT : 279210 221 : aCysGlyGlnLeuAsnIleLeuMetSerArgIleIleGluThrValAsnGlyGluArg : 239 !|||||||||!!!!..||||||:!!!!!!:!:!: !:!! !:!!:!!|||! !!:! lCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLys 279211 : CTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAA : 279267 240 : AspArgAspAlaLysIleLeuLeuAsnGlu<->ThrGlyValValValGluAsnHisL : 258 ! ||| ! ::! !! ! !! !.!.:!! !|||! !:!!:!!|||:!!|||| GlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisL 279268 : GGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATC : 279327 259 : euArgIleLeu : 261 ||!:!|||||| euLysIleLeu 279328 : TGAAGATACTG : 279338 vulgar: Lalb_14617 11 261 . KQ414889.1 278576 279338 + 308 M 57 171 G 0 3 M 50 150 G 0 9 M 43 129 G 1 0 M 87 261 G 0 3 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 279338 308 + . gene_id 15 ; sequence Lalb_14617 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278577 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279338 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278577 279338 308 + . alignment_id 15 ; Query Lalb_14617 ; Align 278577 12 171 ; Align 278751 69 150 ; Align 278910 119 129 ; Align 279039 163 261 ; Align 279303 250 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 296 Query range: 11 -> 261 Target range: 303196 -> 304866 12 : TyrSerLeuGlnValAsnArgTrpTyrLeuLysSerIleGlyAlaTrpProSerSerS : 31 ||| ! !:!! !!:!!:!||| !|||||||||:!!||| !|||||| : TyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTrpPro------A 303197 : TACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTGGCCA------G : 303248 32 : erPheAlaProArgPheGluArgIleValSerValValLeuIleIleIleCysTyrCy : 50 !! ! ! !..! !! ! !!.!!:!! !! !:!! !||| !:!! !! !!! laValLeuAspGluThrAlaGlyPheLeuProLysIleThrIleGlyLeuSerAsnLe 303249 : CCGTGTTGGACGAAACCGCAGGATTCCTACCAAAAATCACCATTGGACTCAGTAATTT : 303305 51 : sSerMetLeuPheThrGlyIleProCysIleLeuHisIleLeuLeuGluAspGluAsp : 69 !:!:|||||||||! !|||||||||||||||||||||:!!!!!|||.!.:!!||| uValLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnLysAsp 303306 : GGTTCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAAAGGAT : 303362 70 : LeuArgLysLysLeuArgAlaThrGlyProLeuIleAsnMetPheMetGlySerIleL : 89 !! !! !!:!|||!:! ! !|||! !|||! ! ! !!.!!:..!! !!!:| ThrIleIleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLeuMetL 303363 : ACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTTGATGA : 303422 90 : ysTyrSerThrLeuLeuPheArgGlyAsnGluIleArgAspCysValGluHisIleGl : 108 |||||!!!.!!||| ! ||| ! ..!|||!:!!!:|||:!!|||.!.:!:|| ysTyrTrpAlaLeuAlaThrArgLysProArgIleLysGluCysIleGluGluValGl 303423 : AGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAGGTGCA : 303479 109 : nValAspTrpGlnIle >>>> Target Intron 1 >>>> ValSerArgValA : 118 | !||||||:!! 938 bp |||..! !:!!| nSerAspTrpLysGlu++ ++ValGluSerLeuA 303480 : AAGTGATTGGAAAGAGgt.........................agGTGGAATCTCTCA : 304447 119 : rgHisArgLeuValMetThrSerTyrAlaLysPheGlyArgTyrValSerValPheCy : 137 || !!||| !:!!||| !!.!|||!.!:!!.!.|||||| !!:!!!!!:!!.!!|| rgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIleCy 304448 : GAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAATCTG : 304504 138 : sAlaAlaPheThrGlnLeuGlyValAlaSerTyrCysPheValAsnAlaLeuSerThr : 156 |||| !|||! ! ! !|||! !.!!! !||| ! |||! !!!!:!!||| sAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheAlaThr 304505 : CGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCGACC : 304561 157 : ArgSerValGlnIleGlyAsnGluThrArgIleValHisValLeuProLeuGluPheT : 176 .!!..! ! :!:! !.!. ! !.!|||! :!! ! !||| !! ! !| ---GlyThrTyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProThrT 304562 : ---GGAACGTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACCT : 304618 177 : yrLysLysLeuLeuAsnIleAspGluSerProThrTyrGluIleValPheValSerGl : 195 ||!.. |||!!!:!!:!!.!. !||||||! !||||||:!:|||!:! !! !!! yrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheValHi 304619 : ACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCA : 304675 196 : nPheIleSerThrSerIleValAsnPheSerSerValGlyAlaPheSerLeuAlaVal : 214 .! !!!:!!! !! !:!!:!! !!! !! !!!!!.!||||||! !.!!||||||!.! sCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAla 304676 : TTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCT : 304732 215 : ThrLeuAlaAlaHisAlaCysGlyGlnLeuAsnIleLeuMetSerArgIleIleGluT : 234 !!!!|||.!!|||||||||||||||:!!:!!|||:!!|||||||||:!: !!!: LeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAspL 304733 : CTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGATC : 304792 235 : hrValAsnGlyGluArgAspArgAspAlaLysIleLeuLeuAsnGluThrGlyValVa : 253 !||||||.!!:!!..!... !||| ! ! ! !! !|||! ||| :! euValAsnSerLysGluSerSerAspLeuAspLysArgLeuIleGlu---------Il 304793 : TTGTCAACAGCAAAGAATCATCTGATTTAGATAAACGATTAATAGAA---------AT : 304840 254 : lValGluAsnHisLeuArgIleLeu : 261 !||||||:!!||||||||||||||| eValGluHisHisLeuArgIleLeu 304841 : TGTTGAGCATCATTTGCGAATTTTA : 304866 vulgar: Lalb_14617 11 261 . KQ414889.1 303196 304866 + 296 M 17 51 G 2 0 M 83 249 5 0 2 I 0 934 3 0 2 M 43 129 G 1 0 M 92 276 G 3 0 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303197 304866 296 + . gene_id 16 ; sequence Lalb_14617 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303197 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303197 303496 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304866 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304866 . + . insertions 0 ; deletions 4 KQ414889.1 exonerate:protein2genome:local similarity 303197 304866 296 + . alignment_id 16 ; Query Lalb_14617 ; Align 303197 12 51 ; Align 303248 31 249 ; Align 304435 114 129 ; Align 304564 158 276 ; Align 304840 253 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 294 Query range: 11 -> 347 Target range: 299689 -> 301842 12 : TyrSerLeuGlnValAsnArgTrpTyrLeuLysSerIleGlyAlaTrpPro<->SerS : 30 |||!!!||||||:!! !!:!|||! |||||| !!||||||!.!|||! ! !. TyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpArgLeuLeuA 299690 : TACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGCGATTGCTAG : 299747 31 : erSerPheAlaProArgPheGluArgIleValSerValValLeuIleIleIleCysTy : 49 .!..! !:!! !!:!.!.|||!.!:!!||||||:!!||||||!!:! !||||||!: spGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMetThrIleCysPh 299748 : ATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATGACAATATGCTT : 299804 50 : rCysSerMetLeuPheThrGlyIleProCysIleLeuHisIleLeuLeuGluAspGlu : 68 !! !|||:!!!!!|||! !! !:!:|||! ! !! !:!!|||!!!!!!! !!!::!! eSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePhePheAlaGluLys 299805 : CTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCTTCGCGGAGAAA : 299861 69 : AspLeuArgLysLysLeuArgAlaThrGlyProLeuIleAsnMetPheMetGlySerI : 88 ..!:!!!.! |||:!!!:!!.! !||||||:!! ! ! .!! ..!! !: SerIleHisValLysValLysValPheGlyProValGlyPheCysLeuSerSerIleV 299862 : AGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCATCG : 299921 89 : leLysTyrSerThrLeuLeuPheArgGlyAsnGluIleArgAspCysValGluHisIl : 107 !!||||||!!! !|||! !.!.!.!|||..!! !.!!..! |||:!!:!!|||:! alLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCysIleGlnHisVa 299922 : TCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGCATCCAACACGT : 299978 108 : eGlnValAspTrpGlnIleValSerArgValArg--HisArgLeuValMetThrSerT : 126 !:!! !||| ... !!|||##|||||| !:!!||| !!!!| lGluArgAsp---UnkUnkUnkUnkUnkUnkArg##HisArgThrIleMetLeuArgT 299979 : CGAGAGAGAC---NNNNNNNNNNNNNNNNTTCGAATCATCGTACGATCATGTTGAGAT : 300034 127 : yrAlaLysPheGlyArgTyrValSerValPheCysAlaAlaPheThrGlnLeuGly{V : 145 ||!.!! .!..!!||| !!:!!!!!..! ! ||||||!.!||| ! ! !|||{! yrValThrMetSerArgAsnLeuThrThrValCysAlaValPheLeuTyrAlaGly{A 300035 : ACGTGACTATGAGCAGAAATCTGACGACCGTGTGCGCCGTGTTTCTTTACGCAGGT{G : 300091 146 : } >>>> Target Intron 1 >>>> {al}AlaSerTyrCysPheValAsnAla : 153 } 39 bp { !} !||| ! |||:!!::: ! }++ -+{sp}ArgSerSerGluPheLeuSerArg 300092 : }gt.........................gg{AC}AGAAGCAGCGAGTTCCTGTCGAGG : 300154 154 : LeuSerThrArgSerValGlnIleGlyAsnGluThrArgIleValHisValLeuProL : 173 !!.!!:!!:!!:! ! ! !!..|||!.! !! ! ! ! !||| !!! GluLysSerLysAsnTyrThrTyrLysArgGluAsnTyrThrTyrLysProLeuAlaT 300155 : GAGAAAAGCAAGAATTACACTTACAAAAGGGAGAATTACACTTACAAACCGTTAGCCT : 300214 174 : euGluPheTyrLysLysLeuLeuAsnIleAspGluSerProThrTyrGluIleValPh : 192 ! !||| ! !!!!:!!:!!! !.!. ||||||||||||||||||||||| yrProGlyTyrAspTrpPheIleAspThrGlnThrSerProThrTyrGluIleValPh 300215 : ATCCTGGCTACGATTGGTTTATCGATACACAAACCAGTCCTACCTACGAgatcgtatt : 300271 193 : eValSerGlnPheIleSerThrSerIleValAsnPheSerSerValGlyAlaPheSer : 211 | ... .!!:!!.!!! !|||:!! !! ! !!!!..!!.!|||!:!||| ePhePheHisCysPheAlaAlaMetIleMetTyrAsnValThrThrAlaAlaTyrSer 300272 : tttctttcactgttTCGCAGCGATGATCATGTACAACGTGACAACGGCAGCGTACAGT : 300328 212 : LeuAlaValThrLeuAlaAlaHisAlaCysGlyGlnLeuAsnIleLeuMetSerArgI : 231 ||||||!.!! !!!!!.!.!!||| !|||||||||:!!.!.|||! !|||:!!|||: LeuAlaAlaIlePheValThrHisIleCysGlyGlnIleGlnIleGlnMetAlaArgL 300329 : TTGGCGGCGATATTCGTCACTCATATCTGTGGACAGATTCAGATACAGATGGCGAGAT : 300388 232 : leIleGluThrValAsnGlyGluArgAspArgAspAlaLysIleLeuLeuAsnGluTh : 250 !: !!: !|||.!. !! ! !!!!:!:!|||! ! ! !:!! euGluAspLeuValGluArgThrGlyGluLysAspAspGly------ProAspProLe 300389 : TGGAGGATCTGGTGGAGAGGACGGGAGAGAAGGACGACGGT------CCTGATCCTTT : 300439 251 : rGlyValValValGluAsnHisLeuArgIleLeu{Se} >>>> Target Intron : 262 !! !|||:!!|||..!:!!|||:!!!:!:!!|||{!!} 1110 bp uValValIleValArgAspHisValLysValLeu{Ar}++ 300440 : GGTCGTTATCGTTCGAGATCACGTGAAGGTTTTA{AG}gt.................. : 300479 263 : 2 >>>> {r}PheIleSerGlnIleGluGluValMetAsnLysIleCysPheThrG : 278 {!} ! !!!....!!... !! !! ! ! :!!||| ... ++{g}AspProCysSerPheArg***ProThrPheHisLeuCysAlaValI 300480 : .......ag{A}GACCCGTGTTCCTTCCGTTAGCCAACTTTTCATCTCTGCgctgtaa : 301633 279 : luMetPheHisThrSerLeuCysThrCysMetLeuGlyTyrTyrIleLeuThrGluTr : 297 |||...:::!!!||| !.!! .!.||| !! ! !!!! !||||| leLysPheGluSerThrLeuAsnAlaLysPheLeuArgValIle***Phe***GluTr 301634 : ttaaatttgaatctACTTTAAATGCAAAGTTTTTACGAGTAATTTGATTTTAGGAATG : 301690 298 : pAspAspArgAspTyrGlnAsnLeuSerCysTyrPheMetIleLeuPheSerMetThr : 316 |.!.:!!!!!||| !:!!! ! !:!|||! :!:||| |||.!.||| pGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThr 301691 : GCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACT : 301747 317 : PheAsnValPheLeuLeuCysTyrIleGlyGlnThrLeuThrGluGlnCysLysLysV : 336 ||||||:!!|||:!!!!!||||||||||||:!!! !|||:!!|||||| ! PheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGlnValLeuThrT 301748 : TTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGGTACTTACTT : 301807 337 : alGlyGluValValTyrMetThrAsnTrpTyrPhe : 347 !.!!..! :::... ::: !|||||| yrSerArgSerPheHisPhePheSerMetTyrPhe 301808 : ACAGTAGAagtttccatttcttttcaatGTATTTC : 301842 vulgar: Lalb_14617 11 347 . KQ414889.1 299689 301842 + 294 M 17 51 G 0 3 M 82 246 G 1 0 M 7 21 F 0 2 M 26 78 S 0 1 5 0 2 I 0 35 3 0 2 S 1 2 M 99 297 G 2 0 M 15 45 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299690 301842 294 + . gene_id 17 ; sequence Lalb_14617 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 299690 300091 . + . KQ414889.1 exonerate:protein2genome:local exon 299690 300091 . + . insertions 3 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local splice5 300092 300093 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300092 300130 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300129 300130 . + . intron_id 0 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 300131 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300131 300476 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301842 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299690 301842 294 + . alignment_id 17 ; Query Lalb_14617 ; Align 299690 12 51 ; Align 299744 29 246 ; Align 299990 112 21 ; Align 300013 119 78 ; Align 300133 146 297 ; Align 300430 247 45 ; Align 301588 263 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 270 Query range: 295 -> 386 Target range: 254071 -> 254436 296 : GluTrpAspAspArgAspTyrGlnAsnLeuSerCysTyrPheMetIleLeuPheSerM : 315 |||||| !!:!!!||| !|||! |||! ! |||.!!:!:! !||| !!:!!: GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaV 254072 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTG : 254129 316 : etThrPheAsnValPheLeuLeuCysTyrIleGlyGlnThrLeuThrGluGln >>> : 333 !:..! |||...||||||:::|||||||||.!!.!.! !|||||||||||| alValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 254130 : TTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt... : 254185 334 : > Target Intron 1 >>>> CysLysLysValGlyGluValValTyrMetThrA : 344 92 bp ||| !|||||||||||||||||||||||||||: ++CysLeuLysValGlyGluValValTyrMetThrA 254186 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 254308 345 : snTrpTyrPheLeuProArgArgCysIleLeuAspLeuArgMetIleIleValArgSe : 363 !!||||||!:!||||||!:!||| ! ||||||||||||! !:!!||||||..!||||| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSe 254309 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATC : 254365 364 : rSerValMetIleLysIleThrAlaSerLysMetPheHisMetSerValTyrThrPhe : 382 |!:!|||:!::!!:!!|||||||||...|||:::||||||||||||:!!||||||||| rAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPhe 254366 : GAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTC : 254422 383 : GlyGlnValSer : 386 |||.!.|||||| GlyAspValSer 254423 : GGCGATGTAAGT : 254436 vulgar: Lalb_14617 295 386 . KQ414889.1 254071 254436 + 270 M 37 111 5 0 2 I 0 88 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254072 254436 270 + . gene_id 18 ; sequence Lalb_14617 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254072 254182 . + . KQ414889.1 exonerate:protein2genome:local exon 254072 254182 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254183 254184 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254183 254274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254273 254274 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254275 254436 . + . KQ414889.1 exonerate:protein2genome:local exon 254275 254436 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254072 254436 270 + . alignment_id 18 ; Query Lalb_14617 ; Align 254072 296 111 ; Align 254275 333 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 240 Query range: 309 -> 388 Target range: 234845 -> 235156 310 : MetIleLeuPheSerMetThrPheAsnValPheLeuLeuCysTyrIleGlyGlnThrL : 329 !!::!:! ! ! |||||||||||||||:::|||:::...||||||||||||:!!|||| IleValTyrValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluThrL 234846 : ATCGTGTACGTGTCCATGACATTtaatatattcatattttgttACATCGGAGAGACGC : 234903 330 : euThrGluGln >>>> Target Intron 1 >>>> CysLysLysValGlyGlu : 338 ||||||||||| 74 bp |||! |||||||||||| euThrGluGln++ ++CysThrLysValGlyGlu 234904 : TTACAGAGCAGgt.........................agTGTACCAAAGTCGGAGAA : 235004 339 : ValValTyrMetThrAsnTrpTyrPheLeuProArgArgCysIleLeuAspLeuArgM : 358 !||||||||||||.!.|||||| ||||||!.!!:! ! !|||! !||| !| LysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValM 235005 : AAAGTGTACATGACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAA : 235064 359 : etIleIleValArgSerSerValMetIleLysIleThrAlaSerLysMetPheHisMe : 377 |||||||| !|||||||||:!!:!!|||||||||||||||.!!|||.!..!.!!.|| etIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheLeuGlnMe 235065 : TGATCATCTCCAGGTCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAAT : 235121 378 : tSerValTyrThrPheGlyGlnValSerMetSer : 388 ||||||| |||||||||.!.||||||!!:!:! tSerValAlaThrPheGlyAspValSerIleAsn 235122 : GTCTGTCGCAACATTTGGCGATGTGAGTATTAAT : 235156 vulgar: Lalb_14617 309 388 . KQ414889.1 234845 235156 + 240 M 23 69 5 0 2 I 0 70 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234846 235156 240 + . gene_id 19 ; sequence Lalb_14617 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234846 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234846 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235156 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235156 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234846 235156 240 + . alignment_id 19 ; Query Lalb_14617 ; Align 234846 310 69 ; Align 234989 333 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 221 Query range: 11 -> 231 Target range: 204236 -> 204890 12 : TyrSerLeuGlnValAsnArgTrpTyrLeuLysSerIleGlyAlaTrpProSerSerS : 31 |||:!! !!:: !! !:! ! !||| !! !:!!||||||||||||! ! !! TyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaTrpProIleProV 204237 : TACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGTGGCCGATTCCAG : 204294 32 : erPheAlaProArgPheGluArgIleValSerValValLeuIleIleIleCysTyrCy : 50 ! !:!! !!! !||| !|||:!!||| !! !:!! ! !:!!:!! !||| alAsnSerSerProPheThrArgLeuValArgArgIleGluHisValValThrTyrPh 204295 : TGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGTAGTCACCtattt : 204351 51 : sSerMetLeuPheThrGlyIleProCysIleLeuHisIleLeuLeuGluAspGluAsp : 69 ......... ! !:!!||| !!:!!|||:!!:!:!!!|||:!!!!::!!:!! eLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheLeuLysGluLysAsn 204352 : cctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAGAAC : 204408 70 : LeuArgLysLysLeuArgAlaThrGlyProLeuIleAsnMetPheMetGlySerIleL : 89 !!:!! :::|||!:! ! !||||||:!!:!:||| !!!: !! !.!!| GlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSerIleGlnPhePheL 204409 : GGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCATACAGTTCTTCA : 204468 90 : ysTyrSerThrLeuLeuPheArgGlyAsnGluIleArgAspCysValGluHisIleGl : 108 ||||||||..!:!!|||!:!||| !:!!:!!|||!:! ! !!:!!.!. !|||:: ysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSerLeuAsnThrIleAr 204469 : AGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGTTTGAACACCATCAG : 204525 109 : nValAspTrpGlnIleValSerArgValArgHisArgLeuValMetThrSerTyrAla : 127 ! !|||||| |||! !:!!! !! !..!:!!||||||:!!.!. !||| ! ||| gArgAspTrp---IleGluAlaThrAspGluAsnArgLeuIlePheArgSerLysAla 204526 : ACGCGACTGG---ATAGAGGCTACGGATGAAAATCGGTTGATTTTCCGCTCGAAAGCG : 204579 128 : LysPheGlyArgTyrValSerValPheCysAlaAlaPheThrGlnLeuGlyValAlaS : 147 |||.!!|||||| |||! !:!!.!!...|||||| !! ! ! !|||! ! !! LysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetTyrGlyGlyGlyLeuC 204580 : AAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGTACGGCGGTGGTTTGT : 204639 148 : erTyrCysPheValAsnAlaLeuSerThrArgSerValGlnIleGlyAsnGluThrAr : 166 !!||| ! :!! ! !!||| !|||.!!..! :!! ! !!!:!.! ysTyrArgThrIleLeuProLeu---LeuArgGlyThrIleValThrProAspAsnVa 204640 : GTTACAGGACGATTCTTCCTTTG---TTGAGAGGAACGATCGTAACACCTGATAACGT : 204693 167 : gIleValHisValLeuProLeuGluPheTyrLysLysLeuLeuAsnIleAspGluSer : 185 !! !:!!... !||||||! ! ! !!||| ......||| .!....||| lThrIleArgProLeuProCysProValTyrPheValPhePheAsnGluGlnArgSer 204694 : TACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaacGAGCAACGTTCG : 204750 186 : ProThrTyrGluIleValPheValSerGlnPheIleSerThrSerIleValAsnPheS : 205 |||!.!|||||||||||||||:!! !|||.!!!!::!! !! !:!!..! !! ! ProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheValThrTyrAlaV 204751 : CCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTGTTACTTACGCTG : 204810 206 : erSerValGlyAlaPheSerLeuAlaValThrLeuAlaAlaHisAlaCysGlyGlnLe : 224 !! ! !|||.!!! !.!!:!!..!!.! !!!!!.! !|||||||||.!!..!|| alIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAlaCysSerMetLe 204811 : TTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGCGTGCAGCATGCT : 204867 225 : uAsnIleLeuMetSerArgIle : 231 |!..||||||:!!!:!!:!!!: uArgIleLeuValAsnLysMet 204868 : GAGGATTTTGGTGAACAAGATG : 204890 vulgar: Lalb_14617 11 231 . KQ414889.1 204236 204890 + 221 M 100 300 G 1 0 M 42 126 G 1 0 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204237 204890 221 + . gene_id 20 ; sequence Lalb_14617 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204237 204890 . + . KQ414889.1 exonerate:protein2genome:local exon 204237 204890 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 204237 204890 221 + . alignment_id 20 ; Query Lalb_14617 ; Align 204237 12 300 ; Align 204537 113 126 ; Align 204663 156 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 214 Query range: 12 -> 207 Target range: 294690 -> 295275 13 : SerLeuGlnValAsnArgTrpTyrLeuLysSerIleGlyAlaTrpPro<->SerSerS : 31 ||||||:!! ! !||| !! |||||| !!|||||| !|||||| ! !! !| SerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrS 294691 : AGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACA : 294748 32 : erPheAlaProArgPheGluArgIleValSerValValLeuIleIleIleCysTyrCy : 50 || !.!! !!:!.!..!.!:!:!!:!!|||:!!:!!|||||| ||| ! erHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLe 294749 : GTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTT : 294805 51 : sSerMetLeuPheThrGlyIleProCysIleLeuHisIleLeuLeuGluAspGluAsp : 69 !!!:!:||||||..! !:!:|||||| !! ! ! !:!!!!!.!.! :::::: uThrValLeuPheValLeuValProCysGlyTyrPheCysValPheHisValLysAsn 294806 : GACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaac : 294862 70 : LeuArgLysLysLeuArgAlaThrGlyProLeuIleAsnMetPheMetGlySerIleL : 89 :::::: |||:!!!:! ! !||||||:!!:!! !! .!.:!:..!! !:!!! ValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuA 294863 : gtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCA : 294922 90 : ysTyrSerThrLeuLeuPheArgGlyAsnGluIleArgAspCysValGluHisIleGl : 108 :!|||||| !|||:!!!!.!:! ! !! !.!!!:! !!|||:!!||| !!|||:! rgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCysIleGluAspIleGl 294923 : GGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGA : 294979 109 : nValAspTrpGlnIleValSerArgValArgHisArgLeuValMetThrSerTyrAla : 127 ! !||||||:!!:!::!!..!!.! !..!|||||| !:!!|||! !!.! !!||| uAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIleMetIleLysAsnAla 294980 : GAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCG : 295036 128 : LysPheGlyArgTyrValSerValPheCysAlaAlaPheThrGlnLeuGlyValAlaS : 147 ! ! !! !!:! :!!!!!||| !! !.!! !.!.! ! ! !..!!.!!.!| MetValThrGlnArgMetThrValAlaPheThrIleIleIleTyrSerSerAlaValS 295037 : ATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGT : 295096 148 : erTyrCysPheValAsnAlaLeuSerThrArgSerValGlnIleGlyAsnGluThrAr : 166 ||||| ! !:!! ... :::...::::!!:!! ..!!!.:!!!.!!. erTyrHisAlaIleValProPhePheSerAsnAlaLeuGlu---AsnLysLysAsnAs 295097 : CGTATCACGCCATTGtgccatttttttcaaacgctTTGGAG---AACAAGAAGAATAA : 295150 167 : gIleValHisValLeuProLeuGluPheTyrLysLysLeuLeuAsnIleAspGluSer : 185 !! :!!!.!!.!||||||:!! !|||:!! !!!!:!!:!! ! !!...||| nThrIleArgAlaLeuProIleProGlyTyrGluLeuPheValAspAlaTyrSerSer 295151 : TACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGT : 295207 186 : ProThrTyrGluIleValPheValSerGlnPheIleSerThrSerIleValAsnPheS : 205 |||||||||||||||:!! ..! !! |||:!!! !:!!! !.!!|||||| ! ProThrTyrGluIleIleArgThrHisLeuPheValTyrSerPhePheValAsnLysT 295208 : CCTACCTACGAGATCATAAGAACTCATCTCTTTGTTTACTCGTTCTTCGTCAACAAAA : 295267 206 : erSerVal : 207 !!.!!||| hrGlyVal 295268 : CTGGTGTC : 295275 vulgar: Lalb_14617 12 207 . KQ414889.1 294690 295275 + 214 M 16 48 G 0 3 M 132 396 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294691 295275 214 + . gene_id 21 ; sequence Lalb_14617 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294691 295275 . + . KQ414889.1 exonerate:protein2genome:local exon 294691 295275 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294691 295275 214 + . alignment_id 21 ; Query Lalb_14617 ; Align 294691 13 48 ; Align 294742 29 396 ; Align 295138 162 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 209 Query range: 325 -> 386 Target range: 258444 -> 258627 326 : GlyGlnThrLeuThrGluGlnCysLysLysValGlyGluValValTyrMetThrAsnT : 345 ..!|||||| ! ! !!||||||||||||||||||!!:|||||||||||||||:!!| AsnGlnThrAsnCys***GlnCysLysLysValGlyAspValValTyrMetThrAspT 258445 : AATCAAACGAATTGTTAACAGTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACT : 258502 346 : rpTyrPheLeuProArgArgCysIleLeuAspLeuArgMetIleIleValArgSerSe : 364 |||||!:!|||||| !!:! ! ||||||||||||! !:!!:!!|||!.!|||||||| rpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLeuValIleAlaArgSerSe 258503 : GGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAG : 258559 365 : rValMetIleLysIleThrAlaSerLysMetPheHisMetSerValTyrThrPheGly : 383 ||||:!::!!:!!|||||||||...|||...||||||||||||:!!|||||||||.!! rValValValGlnIleThrAlaGlyLysPhePheHisMetSerIleTyrThrPheSer 258560 : CGTGGTCGTTCAAATCACCGCGggaaaattctttcacatGTCCATTTACACATTCAGC : 258616 384 : GlnValSer : 386 .!.|||||| AspValSer 258617 : GATGTGAGT : 258627 vulgar: Lalb_14617 325 386 . KQ414889.1 258444 258627 + 209 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258445 258627 209 + . gene_id 22 ; sequence Lalb_14617 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 258445 258627 . + . KQ414889.1 exonerate:protein2genome:local exon 258445 258627 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258445 258627 209 + . alignment_id 22 ; Query Lalb_14617 ; Align 258445 326 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 208 Query range: 331 -> 396 Target range: 264723 -> 264918 332 : GlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrPheLeuProArgA : 351 |||||||||||||||||||||||||||||||||:!!|||||||||!:!|||||| !! GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 352 : rgCysIleLeuAspLeuArgMetIleIleValArgSerSerValMetIleLysIleTh : 370 :! !||||||||||||! !:!:||||||:!!||||||||||||:!!.!!|||.!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 371 : rAlaSerLysMetPheHisMetSerValTyrThrPheGlyGlnValSerMetSerTyr : 389 ||||.!!|||!!:.!!|||||||||:!!|||||||||.!!.!.||| !! :!!||| rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspValArgSerAlaTyr 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTACGTTCCGCTTAT : 264895 390 : HisTrpAsnLysProAsnTyr : 396 !..||| ! !!||| SerProThrLysAsnTyrTyr 264896 : TCGCCCACAAAAAACTATTAC : 264918 vulgar: Lalb_14617 331 396 . KQ414889.1 264723 264918 + 208 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264918 208 + . gene_id 23 ; sequence Lalb_14617 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264918 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264918 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264918 208 + . alignment_id 23 ; Query Lalb_14617 ; Align 264724 332 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 203 Query range: 8 -> 244 Target range: 194162 -> 194858 9 : SerSerAspTyrSerLeuGlnValAsnArgTrpTyrLeuLysSerIleGlyAlaTrpP : 28 ..!!!!!!:|||:!!:!!!:!||| !:! ! !|||! ! !!|||||| !|||| AspThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpP 194163 : GACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGC : 194220 29 : roSerSerSerPheAlaProArgPheGluArgIleValSerValValLeuIleIleIl : 47 ||!!!..!..!! ! !! ! ! ! |||:!: !!:!! !..! !:!::!! roArgGluAspSerLeuArgAspArgValArgLeuPheAlaGlnThrGlyValVal-- 194221 : CAAGGGAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTC-- : 194277 48 : eCysTyrCysSerMetLeuPheThrGlyIleProCysIleLeuHisIleLeuLeuGlu : 66 !:!..!! !|||! !||| ! !:!!||| !:!::!!:!!! !! !!!!!!: ----PheAlaLeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAsp 194278 : ----TTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGAC : 194328 67 : AspGluAspLeuArgLysLysLeuArgAlaThrGlyProLeuIleAsnMetPheMetG : 86 !|||||||||! !!:! ! :!!!:!!.!! !!.! !!! !:!: !! .!.:!!! CysGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuA 194329 : TGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGG : 194388 87 : lySerIleLysTyrSerThrLeuLeuPheArgGlyAsnGluIleArgAspCysValGl : 105 .!! !||||||!:!!!!|||:!!:!! ! !.! !!!!.||||||||| !|||:!! laIleIleLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLe 194389 : CGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCT : 194445 106 : uHisIleGlnValAspTrpGlnIleValSerArgValArgHisArgLeuValMetThr : 124 !.!.!!::!!..!.!.!::::! !|||..! !!! !..! !!|||! !||||||||| uGluMetGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThr 194446 : GGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACG : 194502 125 : SerTyrAlaLysPheGlyArgTyrValSerValPheCysAlaAlaPheThrGlnLeuG : 144 !:!! !||||||.!!||||||!:! !!!!!..!.!.! ! !!.!.!!:!! ! !| AsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyG 194503 : AATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTG : 194562 145 : lyValAlaSerTyrCysPheValAsnAlaLeuSerThrArgSerValGlnIleGlyAs : 163 ||!.! ! !!||| !.!!:!! !!|||! !:!!..!!!!:!! :!! !.! lyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluArgIle---ValLysGl 194563 : GCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATT---GTCAAGGA : 194616 164 : nGluThrArgIleValHisValLeuProLeuGluPheTyrLysLysLeuLeuAsnIle : 182 .!!:!.!!!!! ! ! !||||||! ! ! ! !! ! !!!!!! ||| uAspAsnSerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIle 194617 : GGATAACAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATC : 194673 183 : AspGluSerProThrTyrGluIleValPheValSerGlnPheIleSerThrSerIleV : 202 !!:!!:||||||! !|||||||||..!||||||||||||.!.:!:! !!:!||||||: GluAspSerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleI 194674 : GAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCA : 194733 203 : alAsnPheSerSerValGlyAlaPheSerLeuAlaValThrLeuAlaAlaHisAlaCy : 221 !! ! !!!!:! !||| !!:!||||||!.!!.!|||:!! ! !|||..!|| leLeuSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCy 194734 : TATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTG : 194790 222 : sGlyGlnLeuAsnIleLeuMetSerArgIleIleGluThrValAsnGlyGluArgAsp : 240 |||| !!!!.!.:!: ! ||||||! !!:||||||:!!::!! ! ! !! sGlyLeuPheGluVal---ThrSerArgArgMetGluThrIleSerValProThrGly 194791 : TGGCTTGTTCGAAGTG---ACCAGCAGAAGGATGGAGACTATTTCTGTGCCCACTGGG : 194844 241 : ArgAspAlaLys : 244 !:!||| !::! LysAspIleArg 194845 : AAGGATATTCGG : 194858 vulgar: Lalb_14617 8 244 . KQ414889.1 194162 194858 + 203 M 38 114 G 2 0 M 111 333 G 1 0 M 66 198 G 1 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194163 194858 203 + . gene_id 24 ; sequence Lalb_14617 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194163 194858 . + . KQ414889.1 exonerate:protein2genome:local exon 194163 194858 . + . insertions 0 ; deletions 4 KQ414889.1 exonerate:protein2genome:local similarity 194163 194858 203 + . alignment_id 24 ; Query Lalb_14617 ; Align 194163 9 114 ; Align 194277 49 333 ; Align 194610 161 198 ; Align 194808 228 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 203 Query range: 330 -> 385 Target range: 277548 -> 277713 331 : GluGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrPheLeuProA : 350 ..!|||||||||||||||||||||||||||||||||||||||||||||!:!|||||| ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 351 : rgArgCysIleLeuAspLeuArgMetIleIleValArgSerSerValMetIleLysIl : 369 !!:! !||||||:!!|||! !:!:|||||| !|||||||||::::::|||||||| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 370 : eThrAlaSerLysMetPheHisMetSerValTyrThrPheGlyGlnVal : 385 |||||||...|||:::......|||||||||||||||||||||.!.||| eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspVal 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTA : 277713 vulgar: Lalb_14617 330 385 . KQ414889.1 277548 277713 + 203 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277713 203 + . gene_id 25 ; sequence Lalb_14617 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277549 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277713 203 + . alignment_id 25 ; Query Lalb_14617 ; Align 277549 331 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 201 Query range: 331 -> 386 Target range: 244655 -> 244820 332 : GlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrPheLeuProArgA : 351 |||||| !|||||||||||||||||||||||||||:!!||||||!:!||||||!:!| GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 352 : rgCysIleLeuAspLeuArgMetIleIleValArgSerSerValMetIleLysIleTh : 370 || ! ||||||||||||! !:!!|||||| !||||||!:!:!!:!::!!:!!||||| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 371 : rAlaSerLysMetPheHisMetSerValTyrThrPheGlyGlnValSer : 386 ||||.!!|||:!:!!.|||||||||:!!||||||||||||.!.|||||| rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSer 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGT : 244820 vulgar: Lalb_14617 331 386 . KQ414889.1 244655 244820 + 201 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244820 201 + . gene_id 26 ; sequence Lalb_14617 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244820 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244820 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244820 201 + . alignment_id 26 ; Query Lalb_14617 ; Align 244656 332 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 330 -> 385 Target range: 283273 -> 283438 331 : GluGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrPheLeuProA : 350 ..!|||||||||||||||||||||||||||||||||||||||! !!:!!:!|||||| ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 351 : rgArgCysIleLeuAspLeuArgMetIleIleValArgSerSerValMetIleLysIl : 369 !!:! !||||||:!!|||! !:!:|||||| !|||||||||::::::|||||||| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 370 : eThrAlaSerLysMetPheHisMetSerValTyrThrPheGlyGlnVal : 385 |||||||||||||:::......||||||!.!|||||||||! !.!.||| eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspVal 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTA : 283438 vulgar: Lalb_14617 330 385 . KQ414889.1 283273 283438 + 177 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283438 177 + . gene_id 27 ; sequence Lalb_14617 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283438 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283438 177 + . alignment_id 27 ; Query Lalb_14617 ; Align 283274 331 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 295 -> 387 Target range: 206050 -> 206407 296 : GluTrpAspAspArgAspTyrGlnAsnLeuSerCysTyrPheMetIleLeuPheSerM : 315 ||||||!!::!!!.!:!! ! :!!! ! |||.!!! !:!:! !.!.||| GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 316 : etThrPheAsnValPheLeuLeuCysTyrIleGlyGlnThrLeuThrGluGln >>> : 333 |||||| !||||||:!!|||||||||||||||||| !|||! !!!:||| ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 334 : > Target Intron 1 >>>> CysLysLysValGlyGluValValTyrMetThrA : 344 81 bp ! ! |||||| !..! !! !! !..!| ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 345 : snTrpTyrPheLeuProArgArgCysIleLeuAspLeuArgMetIleIleValArgSe : 363 |||||||| !||||||!.!||| ! ! !..!:!!! !:!!||||||!.!! !|| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 364 : rSerValMetIleLysIleThrAlaSerLysMetPheHisMetSerValTyrThrPhe : 382 |!:! ! ||||||:!!||||||.!!|||||||||.!.||||||:!! !!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 383 : GlyGlnValSerMet : 387 !.!.||||||||| ThrAspValSerMet 206391 : ACCGATGTAAGTATG : 206407 vulgar: Lalb_14617 295 387 . KQ414889.1 206050 206407 + 170 M 37 111 5 0 2 I 0 77 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206407 170 + . gene_id 28 ; sequence Lalb_14617 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206407 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206407 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206407 170 + . alignment_id 28 ; Query Lalb_14617 ; Align 206051 296 111 ; Align 206243 333 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 261 -> 335 Target range: 263671 -> 264657 262 : SerPheIleSerGlnIleGluGluValMetAsnLysIleCysPheThrGluMetPheH : 281 |||||||||..!!::|||:!!.!.||||||!:!! !|||||||||..!|||:!:||| SerPheIleAspArgIleLysAsnValMetSerThrIleCysPheValGluLeuPheL 263672 : AGTTTCATAGATCGTATTAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCA : 263729 282 : isThrSerLeuCysThrCys{Me} >>>> Target Intron 1 >>>> {t}Le : 289 ! .!!!!!||| !! !|||{!!} 764 bp {:}:! ysAlaThrLeuAspIleCys{Il}+- +-{e}Il 263730 : AGGCTACGCTGGATATATGC{AT}gc.........................aa{T}AT : 264517 290 : uGlyTyrTyrIleLeuThrGluTrpAspAspArgAspTyrGlnAsnLeuSerCysTyr : 308 ! ! ! !!:!!!!! !||||||!!:..!!..||| |||||||||::! ||| eThrIleAspValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyr 264518 : AACAATTGACGTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATAT : 264574 309 : PheMetIleLeuPheSerMetThrPheAsnValPheLeuLeuCysTyrIleGlyGlnT : 328 ||||||||||||.!.|||||| ! !|||:!!||||||:!!||||||||||||:!!! PheMetIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluI 264575 : TTCATGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGA : 264634 329 : hrLeuThrGluGlnCysLysLys : 335 !|||||||||||| ||| leLeuThrGluGlnValIleLys 264635 : TATTGACTGAGcaggtaattaaa : 264657 vulgar: Lalb_14617 261 335 . KQ414889.1 263671 264657 + 160 M 26 78 S 0 2 5 0 2 I 0 760 3 0 2 S 1 1 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 263672 264657 160 + . gene_id 29 ; sequence Lalb_14617 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 263672 263751 . + . KQ414889.1 exonerate:protein2genome:local exon 263672 263751 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263752 263753 . + . intron_id 1 ; splice_site "GC" KQ414889.1 exonerate:protein2genome:local intron 263752 264515 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264514 264515 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 264516 264657 . + . KQ414889.1 exonerate:protein2genome:local exon 264516 264657 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 263672 264657 160 + . alignment_id 29 ; Query Lalb_14617 ; Align 263672 262 78 ; Align 264517 289 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 262 -> 347 Target range: 224140 -> 224479 263 : PheIleSerGlnIleGluGluValMetAsnLysIleCysPheThrGluMetPheHisT : 282 |||:!!!!!!!.! !|||:!!!.!:!!.!.:!!:!!! |||..!|||.!..!. ! PheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValGluPheLeuGlyC 224141 : TTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGGAATTTCTAGGCT : 224198 283 : hrSerLeuCysThrCysMetLeuGlyTyrTyrIleLeuThr >>>> Target Int : 296 !! !||| !! !|||:!:||||||||||||:!!:!!..! 84 bp ysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleVal++ 224199 : GCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTGgt............... : 224242 297 : ron 1 >>>> GluTrpAspAspArgAspTyrGlnAsnLeuSerCysTyrPheMetI : 311 ||||||...... !!! !:! ! ! !||||||!!:: ++GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleL 224243 : ..........aggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATAC : 224369 312 : leLeuPheSerMetThrPheAsnValPheLeuLeuCysTyrIleGlyGlnThrLeuTh : 330 !!|||.!.|||:::|||||||||:::|||:::...||||||||||||:!! !:!!.! euLeuMetSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAl 224370 : TACTCATGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGC : 224426 331 : rGluGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrPhe : 347 !|||||| |||... :::::: ::: |||!.! !||| aGluGlnValLysAsnPheLeuLysLeuPhePheThrThrThrThrIlePhe 224427 : TGAAcaggtgaaaaattttttaaaattattcttcacCACTACCACTATTTTT : 224479 vulgar: Lalb_14617 262 347 . KQ414889.1 224140 224479 + 155 M 33 99 5 0 2 I 0 80 3 0 2 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224141 224479 155 + . gene_id 30 ; sequence Lalb_14617 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224141 224239 . + . KQ414889.1 exonerate:protein2genome:local exon 224141 224239 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224240 224241 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224240 224323 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224322 224323 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224324 224479 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224141 224479 155 + . alignment_id 30 ; Query Lalb_14617 ; Align 224141 263 99 ; Align 224324 296 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 291 -> 332 Target range: 210651 -> 210774 292 : TyrIleLeuThrGluTrpAspAspArgAspTyrGlnAsnLeuSerCysTyrPheMetI : 311 !:!:!!||| !|||||||||..!!:!||| ! !:! ! ! |||.!.:!:: PheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValL 210652 : TTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTAC : 210709 312 : leLeuPheSerMetThrPheAsnValPheLeuLeuCysTyrIleGlyGlnThrLeuTh : 330 !!||| !|||:!:|||||||||:!!|||:!!!!!||||||||||||:!!..!|||.! euLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAl 210710 : TCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGC : 210766 331 : rGluGln : 332 !|||||| aGluGln 210767 : TGAACAg : 210774 vulgar: Lalb_14617 291 332 . KQ414889.1 210651 210774 + 112 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210652 210774 112 + . gene_id 31 ; sequence Lalb_14617 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 210652 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210652 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210652 210774 112 + . alignment_id 31 ; Query Lalb_14617 ; Align 210652 292 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 331 -> 389 Target range: 230244 -> 230418 332 : GlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrPheLeuProArgA : 351 ||||||!:!|||||||||||| ! !||||||! !.!.|||||| ||| !! !!! GlnCysArgLysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyA 230245 : CAGTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAA : 230302 352 : rgCysIleLeuAspLeuArgMetIleIleValArgSerSerValMetIleLysIleTh : 370 .! ! ||| !! !! !:!!||||||!.!! !|||!:! ! !! |||.!!|| snLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheTh 230303 : ACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTAC : 230359 371 : rAlaSerLysMetPheHisMetSerValTyrThrPheGlyGlnValSerMetSerTyr : 389 ||||.!!!!.||| !!.!.:!:|||||| !!||||||.!!.!.||||||!!:! !!:! rAlaGlyAsnMetValGluLeuSerValAsnThrPheSerAspValSerIleIlePhe 230360 : AGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGACGTAAGTATCATATTC : 230416 vulgar: Lalb_14617 331 389 . KQ414889.1 230244 230418 + 108 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230245 230418 108 + . gene_id 32 ; sequence Lalb_14617 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230245 230418 . + . KQ414889.1 exonerate:protein2genome:local exon 230245 230418 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230245 230418 108 + . alignment_id 32 ; Query Lalb_14617 ; Align 230245 332 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 287 -> 332 Target range: 305076 -> 305211 288 : MetLeuGlyTyrTyrIleLeuThrGluTrpAspAspArgAspTyrGlnAsnLeuSerC : 307 .!.||| |||::: !!!:|||!!:..!!!!:!! ! !:!|||!!! PheLeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrT 305077 : TTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAA : 305134 308 : ysTyrPheMetIleLeuPheSerMetThrPheAsnValPheLeuLeuCysTyrIleGl : 326 ||| :!!:!!|||.!.|||:!:|||||||||:!!|||:!!|||||||||||||| hrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGl 305135 : CATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGG : 305191 327 : yGlnThrLeuThrGluGln : 332 |:!!! !|||! !|||:!! yGluIleLeuMetGluLys 305192 : TGAGATTCTTATGGAAAAG : 305211 vulgar: Lalb_14617 287 332 . KQ414889.1 305076 305211 + 105 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305077 305211 105 + . gene_id 33 ; sequence Lalb_14617 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305077 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305077 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305077 305211 105 + . alignment_id 33 ; Query Lalb_14617 ; Align 305077 288 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 259 -> 295 Target range: 279903 -> 280011 260 : IleLeuSerPheIleSerGlnIleGluGluValMetAsnLysIleCysPheThrGluM : 279 |||!!!|||||||||||||||||||||! !:!!:!!|||:!!|||||||||..!|||: IlePheSerPheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluV 279904 : ATTTTCAGTTTTATATCGCAAATCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGG : 279961 280 : etPheHisThrSerLeuCysThrCysMetLeuGlyTyrTyrIleLeuThr : 295 !!.!! ! !!!!||| !! !|||.!.||| !||||||:!!|||||| alIleGlyCysThrLeuAsnIleCysPheLeuThrTyrTyrLeuLeuThr 279962 : TGATTGGTTGCACGTTGAACATATGCTTTTTGACATATTATTTACTCACG : 280011 vulgar: Lalb_14617 259 295 . KQ414889.1 279903 280011 + 103 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 279904 280011 103 + . gene_id 34 ; sequence Lalb_14617 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 279904 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279904 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 279904 280011 103 + . alignment_id 34 ; Query Lalb_14617 ; Align 279904 260 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 307 -> 341 Target range: 280127 -> 280229 308 : TyrPheMetIleLeuPheSerMetThrPheAsnValPheLeuLeuCysTyrIleGlyG : 327 |||!!.|||.!!|||.!.|||:!:|||||||||||||||:!!|||||||||||||||: TyrLeuMetPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyG 280128 : TATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTG : 280185 328 : lnThrLeuThrGluGlnCysLysLysValGlyGluValValTyr : 341 !!! !|||:!!|||||| :::........!:!!||| luIleLeuSerGluGlnValPhePheIleSerSerThrIleTyr 280186 : AAATTCTCTCCGAACaggtatttttcatttcttcaacGATCTAT : 280229 vulgar: Lalb_14617 307 341 . KQ414889.1 280127 280229 + 103 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280128 280229 103 + . gene_id 35 ; sequence Lalb_14617 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280128 280229 . + . KQ414889.1 exonerate:protein2genome:local exon 280128 280229 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280128 280229 103 + . alignment_id 35 ; Query Lalb_14617 ; Align 280128 308 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 295 -> 332 Target range: 219328 -> 219439 296 : GluTrpAspAspArgAspTyrGlnAsnLeuSerCysTyrPheMetIleLeuPheSerM : 315 |||||| ! ...!.!||| !!:! ! ! |||.!!!!::!!|||.!.|||: GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 316 : etThrPheAsnValPheLeuLeuCysTyrIleGlyGlnThrLeuThrGluGln : 332 !:|||||||||:::|||:::...||||||||||||:!!! !:!!.!!|||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: Lalb_14617 295 332 . KQ414889.1 219328 219439 + 102 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219439 102 + . gene_id 36 ; sequence Lalb_14617 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219439 102 + . alignment_id 36 ; Query Lalb_14617 ; Align 219329 296 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 332 -> 387 Target range: 219512 -> 219677 333 : CysLysLysValGlyGluValValTyrMetThrAsnTrpTyrPheLeuProArgArgC : 352 |||:::|||:::||||||::: !||||||! !.!.|||||| ||| !! !!!:! CysArgLysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysL 219513 : TGtaggaaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGA : 219570 353 : ysIleLeuAspLeuArgMetIleIleValArgSerSerValMetIleLysIleThrAl : 371 ! ||| ! !:!!! !|||!.!! !|||!:! ! !||||||:!:||||| ysLysLeuTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAl 219571 : AAAAGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGC : 219627 372 : aSerLysMetPheHisMetSerValTyrThrPheGlyGlnValSerMet : 387 |.!!!!.||| !!.!.:!!|||:!! !|||||| !.!.||||||::: aGlyAsnMetValGluLeuSerIleSerThrPheThrAspValSerIle 219628 : CGGAAATATGGTCGAATTGTCTATCAGCACTTTTACCGACGTGAGtatc : 219677 vulgar: Lalb_14617 332 387 . KQ414889.1 219512 219677 + 102 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219513 219677 102 + . gene_id 37 ; sequence Lalb_14617 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219513 219677 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219677 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219513 219677 102 + . alignment_id 37 ; Query Lalb_14617 ; Align 219513 333 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752280|ref|XP_012143908.1| PREDICTED: uncharacterized protein LOC100878986 isoform X1 [Megachile rotundata] Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 76 -> 185 Target range: 1578 -> 1902 77 : LeuAsnLysIleThrThrGlnGlyAsnArgIleAlaAsnLeuTyrArgThrThrLeuLeuSe : 97 |||||| ! !|||..! ! !!.. !|||!.!!!.! !! ! !..!!.! !:!! LeuAsnAspGlnThrValTyrPheThrTyrIleValLysTyrSerIleValAsnAlaIleVa 1579 : TTAAACGACCAAACTGTTTATTTTACGTACATTGTCAAATATTCGATAGTGAACGCGATCGT : 1639 98 : rPheLeuMetValPheIleAlaIleProLeuIleProProAlaLeuAspIleIleAlaProL : 118 !! !:!!!!::!!|||:!::!!! |||:!!! !|||! ! !|||||||||:!! !||| lCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProL 1640 : TTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGA : 1702 119 : euAsnValThrArgProArgGlnProMetPheArgAlaAsnTyrValIleIleLysValAsp : 138 !|||! !:!!||| ! ! ! !!!:!:!! !||| !!||| !!! ! !:!! ! ! ysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLys 1703 : AAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAG : 1762 139 : AspHisPhePheValThrTyrValHisMetAlaSerValAlaSerLeuGlyValPheIleIl : 159 !! !! ! !:!:!! !..!||||||||||||||| ! !:!!! ! !!!:!:!: TyrAspValTyrIle---IleThrHisMetAlaSerValIleLeuValValPheTyrValTy 1763 : TACGACGTGTACATA---ATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTA : 1822 160 : eValThrValAspSerLeuTyrMetLeuIleIleHisHisAlaCysGlyLeuPheAspValC : 180 ! !!.!! !|||!!! !|||!!:! !:!!:!:!!.|||!.!|||||||||!!.! !|||! rPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValS 1823 : CTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGT : 1885 181 : ysGlyTyrGlnValGln : 185 !||| ::::::::: erGly***LysIleArg 1886 : CCGGgtaaaaaattcga : 1902 vulgar: gi|805752280|ref|XP_012143908.1| 76 185 . KQ414921.1 1578 1902 + 105 M 67 201 G 1 0 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1579 1902 105 + . gene_id 1 ; sequence gi|805752280|ref|XP_012143908.1| ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1579 1902 . + . KQ414921.1 exonerate:protein2genome:local exon 1579 1902 . + . insertions 0 ; deletions 1 KQ414921.1 exonerate:protein2genome:local similarity 1579 1902 105 + . alignment_id 1 ; Query gi|805752280|ref|XP_012143908.1| ; Align 1579 77 201 ; Align 1780 145 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752301|ref|XP_012144307.1| PREDICTED: uncharacterized protein LOC100878986 isoform X5 [Megachile rotundata] Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 76 -> 185 Target range: 1578 -> 1902 77 : LeuAsnLysIleThrThrGlnGlyAsnArgIleAlaAsnLeuTyrArgThrThrLeuLeuSe : 97 |||||| ! !|||..! ! !!.. !|||!.!!!.! !! ! !..!!.! !:!! LeuAsnAspGlnThrValTyrPheThrTyrIleValLysTyrSerIleValAsnAlaIleVa 1579 : TTAAACGACCAAACTGTTTATTTTACGTACATTGTCAAATATTCGATAGTGAACGCGATCGT : 1639 98 : rPheLeuMetValPheIleAlaIleProLeuIleProProAlaLeuAspIleIleAlaProL : 118 !! !:!!!!::!!|||:!::!!! |||:!!! !|||! ! !|||||||||:!! !||| lCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProL 1640 : TTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGA : 1702 119 : euAsnValThrArgProArgGlnProMetPheArgAlaAsnTyrValIleIleLysValAsp : 138 !|||! !:!!||| ! ! ! !!!:!:!! !||| !!||| !!! ! !:!! ! ! ysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLys 1703 : AAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAG : 1762 139 : AspHisPhePheValThrTyrValHisMetAlaSerValAlaSerLeuGlyValPheIleIl : 159 !! !! ! !:!:!! !..!||||||||||||||| ! !:!!! ! !!!:!:!: TyrAspValTyrIle---IleThrHisMetAlaSerValIleLeuValValPheTyrValTy 1763 : TACGACGTGTACATA---ATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTA : 1822 160 : eValThrValAspSerLeuTyrMetLeuIleIleHisHisAlaCysGlyLeuPheAspValC : 180 ! !!.!! !|||!!! !|||!!:! !:!!:!:!!.|||!.!|||||||||!!.! !|||! rPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValS 1823 : CTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGT : 1885 181 : ysGlyTyrGlnValGln : 185 !||| ::::::::: erGly***LysIleArg 1886 : CCGGgtaaaaaattcga : 1902 vulgar: gi|805752301|ref|XP_012144307.1| 76 185 . KQ414921.1 1578 1902 + 105 M 67 201 G 1 0 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1579 1902 105 + . gene_id 1 ; sequence gi|805752301|ref|XP_012144307.1| ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1579 1902 . + . KQ414921.1 exonerate:protein2genome:local exon 1579 1902 . + . insertions 0 ; deletions 1 KQ414921.1 exonerate:protein2genome:local similarity 1579 1902 105 + . alignment_id 1 ; Query gi|805752301|ref|XP_012144307.1| ; Align 1579 77 201 ; Align 1780 145 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 411 Query range: 0 -> 212 Target range: 367 -> 1890 1 : MetAspAlaValThrLeuGlnGlnArgTyrLeuLysLeuThrLysAlaTyrLeuLeuLeuTh : 21 |||||||||:!!||||||:!!:!!!:!|||:!!|||||||||||| !! ! !! !!!!:! MetAspAlaIleThrLeuGluGluGlnTyrIleLysLeuThrLysIleCysAlaGlnPheSe 368 : ATGGACGCGATCACTCTAGAGGAGCAATACATCAAGTTGACCAAGATATGCGCCCAATTCTC : 428 22 : rGlyMetTrpPro-----AsnGlnAsnAsnGlnIleLeuProAsnAsnCysGlyIleSerTy : 40 !|||.!.||||||#####.!.|||!.! !:!!|||! ! ! ||| !..!:!! !:! rGlyPheTrpPro#####GluGlnThrValGluIleArgIleAlaAsnAsnAsnValHisHi 429 : CGGTTTCTGGCCATGGCAGAGCAAACTGTCGAAATACGTATCGCGAATAATAACGTACACCA : 490 41 : rIleTrpHisLeuGlnGlnValAla{A} >>>> Target Intron 1 >>>> {rg}V : 50 ! !!::||| !...! !|||{.} 727 bp {.!}| sArgPheHisGlySerLeuHisAla{G}++ +-{lu}V 491 : TCGTTTTCACGGTTCTCTTCACGCA{G}gt.........................ac{AA}G : 1247 51 : alValArgPhePheSerLeuThrValLeuIleGlnGlnLeuGlyPheLeuLeuGlyGlyIle : 70 ||||| !!|||||||||||| !|||||||||.!.||||||..!|||!!! !!.!! !! ! alValCysPhePheSerLeuAspValLeuIleAspGlnLeuSerPhePheGlyAlaValSer 1248 : TGGTGTGTTTCTTCAGTTTGGACGTTCTTATAGATCAGCTATCATTTTTTGGCGCGGTAAGC : 1307 71 : LeuLeuLeuAlaLysGlnSerAlaTyrValGlyHisLysAlaLys >>>> Target Int : 86 ! !||| !||||||.!! !|||:!!! ! !|||! !:!! 90 bp GlyThrLeuLeuLysGlnGlyAsnTyrIleValPheLysGluGlu++ 1308 : GGGACACTGTTGAAACAGGGGAACTACATCGTCTTTAAAGAGGAGgt............... : 1357 87 : ron 2 >>>> PheGluThrLeuLeuHisGlyMetPheAsnAspTrpGluAlaValArgPr : 102 !:!|||:!!|||:!! !||| |||||||||..! !! !||||| ++TyrGluSerLeuIleSerGlyAlaArgAsnAspTrpSerIleGluArgPr 1358 : ..........agTACGAGTCGCTTATTAGCGGTGCCAGGAACGACTGGTCGATCGAGAGACC : 1493 103 : oLysGluGluValAlaIleMetThrSerTyrMetAspArgGlyAlaPheIleValLeuIleT : 123 |:!!! !|||:!!! !|||||||||!.!||| !!:||||||||||||:::::: | oGlnGlyGluIleAspIleMetThrLysTyrAlaGluArgGlyAlaPheLeuIleSerThrT 1494 : ACAAGGGGAGATCGACATTATGACTAAATACGCCGAGAGGGGtgcttttttaatttcgacaT : 1556 124 : yrAla{V} >>>> Target Intron 3 >>>> {al}AsnValPheGlyCysThrLeu : 132 || !{|} 65 bp {||}|||!.!.!!! !|||..!:!! yrLeu{V}++ ++{al}AsnAlaIleValCysValIle 1557 : ACCTT{G}gt.........................ag{TG}AACGCGATCGTTTGTGTCATC : 1648 133 : LeuPheIleAsnMetProTrpLeuProArgIleAlaAspIleLeuMetProLeuAsnThrSe : 153 ||||||:!::::! !||| ! !|||!.!||| !|||||||||:!:||| !||| !|| LeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSe 1649 : CTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAAAACGAGTC : 1711 154 : rArgAspArgLeuPheIleIleProAlaCysTyrPheValAspGluAsnLysTyrTyrTyrT : 174 ||||||| ! !!:!||| !||||||! !||||||..!||||||:!!|||||| !! ! rArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValT 1712 : ACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGT : 1774 175 : rpIleIleAlaHisMetThrIleIleIleIleThrAlaGlySerValTyrIleAlaCysAsp : 194 ::||||||.!!||||||.!! !:!:|||:!:..!!.! !! !||||||.!!||||||||| yrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrPheAlaCysAsp 1775 : ACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGAC : 1834 195 : ThrCysPheIleTyrIleValGlnHisAlaCysGlyLeuLeuGlyValAlaGly : 212 ||| !!!:!||||||:!!|||||||||!.!||||||||||||!.!|||:!!||| ThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly 1835 : ACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGg : 1890 vulgar: gi|383857245|ref|XP_003704115.1| 0 212 . KQ414921.1 367 1890 + 411 M 25 75 F 0 5 M 23 69 S 0 1 5 0 2 I 0 723 3 0 2 S 1 2 M 36 108 5 0 2 I 0 86 3 0 2 M 39 117 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 368 1890 411 + . gene_id 1 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation + KQ414921.1 exonerate:protein2genome:local cds 368 517 . + . KQ414921.1 exonerate:protein2genome:local exon 368 517 . + . insertions 0 ; deletions 0 ; frameshifts 5 KQ414921.1 exonerate:protein2genome:local splice5 518 519 . + . intron_id 1 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 518 1244 . + . intron_id 1 KQ414921.1 exonerate:protein2genome:local splice3 1243 1244 . + . intron_id 0 ; splice_site "AC" KQ414921.1 exonerate:protein2genome:local cds 1245 1354 . + . KQ414921.1 exonerate:protein2genome:local exon 1245 1354 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 1355 1356 . + . intron_id 2 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 1355 1444 . + . intron_id 2 KQ414921.1 exonerate:protein2genome:local splice3 1443 1444 . + . intron_id 1 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 1445 1562 . + . KQ414921.1 exonerate:protein2genome:local exon 1445 1562 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 1563 1564 . + . intron_id 3 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 1563 1627 . + . intron_id 3 KQ414921.1 exonerate:protein2genome:local splice3 1626 1627 . + . intron_id 2 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 1628 1890 . + . KQ414921.1 exonerate:protein2genome:local exon 1628 1890 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 368 1890 411 + . alignment_id 1 ; Query gi|383857245|ref|XP_003704115.1| ; Align 368 1 75 ; Align 448 26 69 ; Align 1247 50 108 ; Align 1445 86 117 ; Align 1630 126 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 266 Query range: 281 -> 384 Target range: 2976 -> 3425 282 : LeuSerGluLeuAspIleCysLeuGluPheTyrGlnGlyLeuGlyPheLeuValValGlnLe : 302 :!!|||.!.! !!!:||| ! !|||||| !:!!! !! ! !|||:!!|||:!!||||| ValSerAsnSerGluIleAsnAlaGluPheAlaLysAspCysThrPheIleValIleGlnLe 2977 : GTGTCGAACTCGGAGATTAACGCGGAGTTTGCCAAGGATTGCACATTTATCGTGATTCAATT : 3037 303 : uMetHisLeuPhePheLeuThrLeuHisGlyGluPheValIleGluSerAsnAspLysAlaT : 323 |:!:|||:!!.!!!:!|||||||||!!.|||:!!|||||||||!!::!!|||!!::!! !! uValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAspAlaAsnGluGluIleP 3038 : GGTACACATACTTTACCTAACTCTTCAAGGACAATTCGTGATCGACGCGAACGAGGAAATCT : 3100 324 : yrAsnGln{Il} >>>> Target Intron 1 >>>> {e}TyrGluGlyLeuTrpTyr : 332 :!.!...!{||} 62 bp {|}|||...!.!||||||||| heGluSer{Il}++ ++{e}TyrSerAlaLeuTrpTyr 3101 : TCGAATCG{AT}gt.........................ag{A}TACAGCGCTTTGTGGTAT : 3189 333 : AsnAlaAlaProLysAlaGlnAlaLeuTyrValLeuAlaLeuArgAlaSerAlaAlaAlaPr : 353 |||::!! ! !!:!.!!|||:!!|||!:!||||||||||||||| !!!! !:!!||||| AsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeuArgAsnCysLeuSerAlaPr 3190 : AACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGTTAAGAAATTGTCTATCTGCTCC : 3252 354 : oGlnIleThrAlaGlyGlyGlnIleProMetAsnLeuGluThrPheAlaVal >>>> Tar : 371 |||||||||||||||||||! !||| !!|||||||||:!!!:!|||:!!! ! oGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGlnSerPheSerGlu++ 3253 : TCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAAAGTTTCTCAGAGgt........ : 3308 372 : get Intron 2 >>>> IleIleLysAlaSerValSerTyrPheThrMetLeuLysSer : 384 78 bp |||:!!|||.!!||||||||||||!:!! !:!:||||||||| ++IleValLysThrSerValSerTyrTyrMetValLeuLysSer 3309 : .................agATTGTAAAGACGTCTGTCTCGTACTACATGGTACTGAAATCC : 3425 vulgar: gi|383857245|ref|XP_003704115.1| 281 384 . KQ414921.1 2976 3425 + 266 M 44 132 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 44 132 5 0 2 I 0 74 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 2977 3425 266 + . gene_id 2 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation + KQ414921.1 exonerate:protein2genome:local cds 2977 3110 . + . KQ414921.1 exonerate:protein2genome:local exon 2977 3110 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 3111 3112 . + . intron_id 1 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 3111 3172 . + . intron_id 1 KQ414921.1 exonerate:protein2genome:local splice3 3171 3172 . + . intron_id 0 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 3173 3305 . + . KQ414921.1 exonerate:protein2genome:local exon 3173 3305 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 3306 3307 . + . intron_id 2 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 3306 3383 . + . intron_id 2 KQ414921.1 exonerate:protein2genome:local splice3 3382 3383 . + . intron_id 1 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 3384 3425 . + . KQ414921.1 exonerate:protein2genome:local exon 3384 3425 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 2977 3425 266 + . alignment_id 2 ; Query gi|383857245|ref|XP_003704115.1| ; Align 2977 282 132 ; Align 3174 327 132 ; Align 3384 371 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 337 -> 403 Target range: 117797 -> 117995 338 : IleGlyProAlaAlaTyrGluIleAspTrpTyrAsnLeuProTyrLysLysAlaHisA : 357 ||||||! !||||||||| !:!: !|||:!! ! !||| ! ! ! ! IleGlyArgAlaAlaTyrThrValProTrpHisTrpTyrProArgCysLeuArgLysP 117798 : ATCGGTCGTGCAGCCTATACGGTGCCTTGGCATTGGTACCCTCGTTGCTTGCGAAAAC : 117855 358 : spLeuIleLeuLeuSerValValSerAsnTyrProProLysLeuThrAlaGlyLysIl : 376 !! !:!!|||! !:!! !.!!.!. ! ||| !:::||||||||||||||||| roThrAsnMetLeuMetIleArgGlyGlnLysProValArgLeuThrAlaGlyLysIl 117856 : CAACCAACATGCTGATGATCAGAGGTCAGAAACCGGTTCGTCTGACCGCCGGAAAAAT : 117912 377 : ePheThrLeuSerLeuAsnThrPheSerSerValGlyAspAlaValIleGlyTyrLeu : 395 | !! !|||||||||.!.||||||:!!||||||..!! !!.!:!! ! ! !||| eValGlyLeuSerLeuGluThrPheAlaSerValSerValValIleSerIleLeuLeu 117913 : CGTCGGACTCTCTCTGGAAACGTTTGCCTCTGTATCCGTCGTTATCTCTATTCTCCTC : 117969 396 : PheLysSerAlaThrHisSerTyr : 403 ! ! ||| !!:!!|||:::::: CysValSerProSerHisAlaHis 117970 : TGTGTCTCGCCTTCCCACgctcat : 117995 vulgar: Lalb_14618 337 403 . KQ414940.1 117797 117995 + 100 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 117798 117995 100 + . gene_id 1 ; sequence Lalb_14618 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 117798 117995 . + . KQ414940.1 exonerate:protein2genome:local exon 117798 117995 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 117798 117995 100 + . alignment_id 1 ; Query Lalb_14618 ; Align 117798 338 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_09696 [mRNA] [translate_table: standard] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 944 Query range: 0 -> 327 Target range: 805862 -> 807428 1 : MetArgLeuLeuGlyIleTrpProLeuAsnSerAspAspIleLeuArgSerSerLeuG : 20 :!!|||:!!:!!|||||||||||| !!:! !:!!:!!.!! :!!|||:!!| LeuArgIleIleGlyIleTrpProSerSerValAsnAsnPhe------AlaSerIleG 805863 : TTGAGAATAATCGGGATTTGGCCGAGCAGCGTTAACAATTTC------GCGTCCATCG : 805914 21 : lyArgTrpCysPheAlaMetLeuThrGln >>>> Target Intron 1 >>>> : 30 |||||||| ||||||!!:||||||!!. 72 bp lyArgTrpThrPheAlaIleLeuThrHis++ ++ 805915 : GTCGATGGACGTTCGCCATCTTGACGCATgt.........................ag : 806014 31 : ValSerAlaIleCysSerLeuThrThrAlaValTyrArgHisCysLeuAspIleAspA : 49 :!!|||.!!|||! !||||||:!! !! !|||||||||||||||||||||:!!|||| IleSerThrIleTyrSerLeuSerLeuGluValTyrArgHisCysLeuAspLeuAspA 806015 : ATCAGTACTATCTACAGCCTGTCTCTCGAAGTCTATCGTCATTGTCTGGACCTCGACG : 806073 50 : spThrMetAspAlaPheLeuMetAspLeuSerAlaMetValSerLeuSerLysValPh : 68 |||||||||||||||||:!!||||||||||||:!!:!!:!!||||||||||||:!!.! spThrMetAspAlaPheValMetAspLeuSerSerValIleSerLeuSerLysLeuLe 806074 : ACACGATGGACGCGTTCGTCATGGATCTGTCGTCGGTGATCAGTCTGTCCAAGCTGCT : 806130 69 : eIleLeuArgPheAsnTrpLysHisThrTyrAlaLeuValAsnSerIleValGluAsp : 87 !:!!||||||.!.!!.! !|||||||||||||||||||||:!!|||||||||:!!||| uValLeuArgMetLysSerLysHisThrTyrAlaLeuValAspSerIleValLysAsp 806131 : CGTTTTACGGATGAAATCGAAACACACTTACGCTCTCGTCGATTCGATCGTCAAAGAC : 806187 88 : TrpSerAsnValLysAspLeuGlyHisArgAsnIleMetAlaLysTyrGluGluLysG : 107 |||!!!|||||| ! !!! ! !!|||..!..!||||||.!!:!!||| .!.|||| TrpThrAsnValAspHisSerArgHisGluArgIleMetThrGluTyrPheAsnLysG 806188 : TGGACGAACGTCGATCATTCCCGCCACGAACGCATCATGACGGAGTACTTCAACAAAG : 806247 108 : lyGlnLeuValSerMetLeuLeuLeuTyrMetGlyTyrAlaSerGlyLeuSerPheAl : 126 ||::!:!!||||||:!! !:!!||||||:!:||||||||||||||||||||||||!. lyArgIleValSerLeuThrIleLeuTyrLeuGlyTyrAlaSerGlyLeuSerPheVa 806248 : GAAGAATCGTTTCGTTGACGATACTCTACCTTGGATACGCCTCTGGACTGTCTTTCGT : 806304 127 : aValLysThrLeuProPheHisLeuLeuProPheGln >>>> Target Intron : 139 !:!!|||.!!||||||!!.|||||||||||||||||| 82 bp lLeuLysAlaLeuProLeuHisLeuLeuProPheGln++ 806305 : TCTCAAAGCCCTGCCTTTGCACCTTCTACCCTTCCAGgt................... : 806345 140 : 2 >>>> ValPheGlnPheProSerAsnSerThrSerThrValAspProThrLeuLy : 155 !.!!!!. ! !:!!||||||||| !!.!..!:!! !||| !:: ++LysLeuHisSerTrpAlaAsnSerThrValAsnThrAsnAspThrAlaAr 806346 : ......agAAGCTCCACAGTTGGGCGAATTCAACGGTGAACACGAACGATACAGCGag : 806473 156 : sAsnLysTyrPheLeuSerThrTyrCysAlaPheGlyProLeuProTrpSerLeuArg : 174 : ...|||||||||:!!|||:!!|||!.!|||||||||||||||! !..!! !!.! gLeuAsnTyrPheLeuAlaThrHisCysValPheGlyProLeuProLeuGlnHisHis 806474 : attgaattatttcttgGCCACGCACTGCGTGTTCGGCCCTTTACCGTTGCAGCATCAC : 806530 175 : SerCysValLeuAlaValGlnGlyValThrValPheValAsnValValGlyHisCysG : 194 !||||||||| !:!!||||||:!! !:!!||| !!|||!.!|||!.!||||||| ValCysValLeuLeuLeuGlnGlyMetHisIlePhePheAsnAlaValAlaHisCysG 806531 : GTCTGCGTGTTACTGCTGCAAGGGATGCACATTTTCTTCAACGCCGTGGCTCACTGCG : 806590 195 : lyAsnAspValPhePhePheSerLeuThrMetHisLeuCysGlyGlnPheGluValLe : 213 ||||||||! !.!!|||||||||||||||||||||||||||||||||||||||:!!|| lyAsnAspGlyLeuPhePheSerLeuThrMetHisLeuCysGlyGlnPheGluIleLe 806591 : GCAACGACGGCCTCTTCTTCAGCCTGACGATGCATCTGTGCGGTCAGTTTGAAATTCT : 806647 214 : uLysThrLysLeuSerGluIleGluIleGluLysProAspTyrArgLysLysIleGly : 232 ||||! !!!.|||:!!|||||||||.!!||| ! !! !! !||||||::!|||||| uLysMetAsnLeuAlaGluIleGluPheGluAlaIleAlaCysArgLysArgIleGly 806648 : GAAGATGAATCTGGCGGAGATCGAGTTCGAGGCGATCGCTTGTCGGAAGCGAATCGGC : 806704 233 : SerLeuValGlnArgHisCysArgLeuValLeuLeuAlaAspAspLeuGluArgSerP : 252 !||||||:!!|||||||||!:!|||!.!:!!|||.!!:!!|||||||||!:!|||| ValLeuValLysArgHisCysLysLeuAlaValLeuThrAsnAspLeuGluGlnSerP 806705 : GTTCTCGTGAAACGACACTGCAAACTGGCGGTGTTGACCAACGATCTCGAGCAGAGCT : 806764 253 : heAsnValValIleLeuValGlnLeuLeuMetSerIleLeuLeuLeuCysIleGlu{G : 271 ||!:!:!!:!!|||||||||||||||:!!|||||| ||||||:!!|||:!!|||{| heSerMetIleIleLeuValGlnLeuMetMetSerAlaLeuLeuIleCysValGlu{G 806765 : TCAGTATGATTATTCTGGTGCAACTCATGATGAGTGCGTTGCTAATTTGCGTAGAA{G : 806821 272 : } >>>> Target Intron 3 >>>> {ly}PheLeuMetLeuValPheLeuLys : 279 } 437 bp {||}|||:!!.!.|||||| !|||!.. }++ ++{ly}PheValPheLeuValAlaLeuSer 806822 : }gt.........................ag{GT}TTCGTCTTCCTGGTCGCTCTGAGC : 807282 280 : AlaAsnAspArgAlaGlyGluLeuLysCysLeuLeuIleAlaThrThrLeuLeuIleG : 299 .!!!!.|||!.!!.!!.!! !|||!:! !!!!!:!!:!: !..!||||||||||||| ThrLysAspAsnValAlaAlaLeuArgSerPheValLeuMetValThrLeuLeuIleG 807283 : ACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGATTC : 807342 300 : lnLeuTyrAlaTyrThrTyrAlaGlyAspAlaLeuGluSerGlnSerAlaGlyIleSe : 318 |||||||| !|||.!!|||||||||:!!.!!|||||||||!:!!!!! !! !|||:! lnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluIleAl 807343 : AGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGC : 807399 319 : rPheAlaAlaTyrAspSerThrTrpTyr : 327 ! ||||||||||||||| !|||||| aGlnAlaAlaTyrAspSerLeuTrpTyr 807400 : ACAAGCCGCCTATGACTCTCTTTGGTAC : 807428 vulgar: Lalb_09696 0 327 . KQ414940.1 805862 807428 + 944 M 14 42 G 2 0 M 13 39 5 0 2 I 0 68 3 0 2 M 109 327 5 0 2 I 0 78 3 0 2 M 132 396 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 805863 807428 944 + . gene_id 1 ; sequence Lalb_09696 ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 805863 805943 . + . KQ414940.1 exonerate:protein2genome:local exon 805863 805943 . + . insertions 0 ; deletions 2 KQ414940.1 exonerate:protein2genome:local splice5 805944 805945 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 805944 806015 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 806014 806015 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 806016 806342 . + . KQ414940.1 exonerate:protein2genome:local exon 806016 806342 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 806343 806344 . + . intron_id 2 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806343 806424 . + . intron_id 2 KQ414940.1 exonerate:protein2genome:local splice3 806423 806424 . + . intron_id 1 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 806425 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806425 806821 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 3 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807258 . + . intron_id 3 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 2 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807428 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807428 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 805863 807428 944 + . alignment_id 1 ; Query Lalb_09696 ; Align 805863 1 42 ; Align 805905 17 39 ; Align 806016 30 327 ; Align 806425 139 396 ; Align 807261 272 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_09696 [mRNA] [translate_table: standard] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 268 Query range: 328 -> 390 Target range: 807410 -> 807596 329 : TyrAspSerThrTrpTyrArgSerArgGlyHisArgAlaArgAspLeuAlaLeuIleI : 348 ||||||||| !|||||||||!!!!.!|||||| !|||||||||||| !||||||| TyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleI 807411 : TATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCA : 807468 349 : leHisArgGlyAsnSerProTyrCysIleThrAlaGlyLysPheMetProMetAsnLe : 367 ||||||||||||||||||||||| !!||||||||||||||||||:!:||||||||||| leHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheValProMetAsnLe 807469 : TCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCT : 807525 368 : uLeuThrPheLysGluIleLeuLysAlaSerAlaSerTyrMetSerValLeuLysVal : 386 |!!!|||||||||||||||||||||||||||!.!||||||:!!||||||:!!|||||| uPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSerValMetLysVal 807526 : TTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTA : 807582 387 : MetMetAspAla : 390 |||||||||||| MetMetAspAla 807583 : ATGATGGACGCA : 807596 vulgar: Lalb_09696 328 390 . KQ414940.1 807410 807596 + 268 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807411 807596 268 + . gene_id 2 ; sequence Lalb_09696 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807411 807596 . + . KQ414940.1 exonerate:protein2genome:local exon 807411 807596 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807411 807596 268 + . alignment_id 2 ; Query Lalb_09696 ; Align 807411 329 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752280|ref|XP_012143908.1| PREDICTED: uncharacterized protein LOC100878986 isoform X1 [Megachile rotundata] Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 98 -> 181 Target range: 32503 -> 32749 99 : LeuMetValPheIleAlaIleProLeuIleProProAlaLeuAspIleIleAlaProLeu : 118 :!!.!. !!:! ! !:!:! !!!!:!:||| ! !:!!|||:!:|||||||||||| IlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeu 32504 : ATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTA : 32561 119 : AsnValThrArgProArgGlnProMetPheArgAlaAsnTyrValIleIleLysValAsp : 138 |||! !:!!|||! !!.! !! ! !!:! !!.!.!.||| .!!:!! ! ... AsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyr---PheValAspGlnGln 32562 : AACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATAT---TTCGTCGACcagcaa : 32618 139 : AspHisPhePheValThrTyrValHisMetAlaSerValAlaSerLeuGlyValPheIle : 158 :::|||... !! ! :!!|||||| !.!!..!!.!!!!||||||:!! :!! LysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrVal 32619 : aaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTC : 32678 159 : IleValThrValAspSerLeuTyrMetLeuIleIleHisHisAlaCysGlyLeuPheAsp : 178 !..!.!!|||||||||:::::::::......::: !|||!.!|||!.! !|||:!! AlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsn 32679 : GCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAAT : 32738 179 : ValCysGly : 181 :!! !||| IleLeuGly 32739 : ATTCTCGGG : 32749 vulgar: gi|805752280|ref|XP_012143908.1| 98 181 . KQ415081.1 32503 32749 + 107 M 34 102 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32504 32749 107 + . gene_id 1 ; sequence gi|805752280|ref|XP_012143908.1| ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32504 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32504 32749 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32504 32749 107 + . alignment_id 1 ; Query gi|805752280|ref|XP_012143908.1| ; Align 32504 99 102 ; Align 32606 134 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752301|ref|XP_012144307.1| PREDICTED: uncharacterized protein LOC100878986 isoform X5 [Megachile rotundata] Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 98 -> 181 Target range: 32503 -> 32749 99 : LeuMetValPheIleAlaIleProLeuIleProProAlaLeuAspIleIleAlaProLeu : 118 :!!.!. !!:! ! !:!:! !!!!:!:||| ! !:!!|||:!:|||||||||||| IlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeu 32504 : ATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTA : 32561 119 : AsnValThrArgProArgGlnProMetPheArgAlaAsnTyrValIleIleLysValAsp : 138 |||! !:!!|||! !!.! !! ! !!:! !!.!.!.||| .!!:!! ! ... AsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyr---PheValAspGlnGln 32562 : AACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATAT---TTCGTCGACcagcaa : 32618 139 : AspHisPhePheValThrTyrValHisMetAlaSerValAlaSerLeuGlyValPheIle : 158 :::|||... !! ! :!!|||||| !.!!..!!.!!!!||||||:!! :!! LysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrVal 32619 : aaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTC : 32678 159 : IleValThrValAspSerLeuTyrMetLeuIleIleHisHisAlaCysGlyLeuPheAsp : 178 !..!.!!|||||||||:::::::::......::: !|||!.!|||!.! !|||:!! AlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsn 32679 : GCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAAT : 32738 179 : ValCysGly : 181 :!! !||| IleLeuGly 32739 : ATTCTCGGG : 32749 vulgar: gi|805752301|ref|XP_012144307.1| 98 181 . KQ415081.1 32503 32749 + 107 M 34 102 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32504 32749 107 + . gene_id 1 ; sequence gi|805752301|ref|XP_012144307.1| ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32504 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32504 32749 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32504 32749 107 + . alignment_id 1 ; Query gi|805752301|ref|XP_012144307.1| ; Align 32504 99 102 ; Align 32606 134 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752280|ref|XP_012143908.1| PREDICTED: uncharacterized protein LOC100878986 isoform X1 [Megachile rotundata] Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 76 -> 185 Target range: 154 -> 478 77 : LeuAsnLysIleThrThrGlnGlyAsnArgIleAlaAsnLeuTyrArgThrThrLeuLeuSerP : 98 |||||| ! !|||..! ! !!.. !|||!.!!!.! !! ! !..!!.! !:!! !! LeuAsnAspGlnThrValTyrPheThrTyrIleValLysTyrSerIleValAsnAlaIleValC 155 : TTAAACGACCAAACTGTTTATTTTACGTACATTGTCAAATATTCGATAGTGAACGCGATCGTTT : 218 99 : heLeuMetValPheIleAlaIleProLeuIleProProAlaLeuAspIleIleAlaProLeuAs : 119 !:!!!!::!!|||:!::!!! |||:!!! !|||! ! !|||||||||:!! !||| !|| ysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProLysAs 219 : GTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAAAA : 281 120 : nValThrArgProArgGlnProMetPheArgAlaAsnTyrValIleIleLysValAspAspHis : 140 |! !:!!||| ! ! ! !!!:!:!! !||| !!||| !!! ! !:!! ! ! !! !! nGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAsp 282 : CGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGAC : 344 141 : PhePheValThrTyrValHisMetAlaSerValAlaSerLeuGlyValPheIleIleValThrV : 162 ! !:!:!! !..!||||||||||||||| ! !:!!! ! !!!:!:!: ! !!.!! ValTyrIle---IleThrHisMetAlaSerValIleLeuValValPheTyrValTyrPheAlaC 345 : GTGTACATA---ATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTT : 407 163 : alAspSerLeuTyrMetLeuIleIleHisHisAlaCysGlyLeuPheAspValCysGlyTyrGl : 183 !|||!!! !|||!!:! !:!!:!:!!.|||!.!|||||||||!!.! !|||! !||| :: ysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly***Ly 408 : GTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaa : 470 184 : nValGln : 185 ::::::: sIleArg 471 : aattcga : 478 vulgar: gi|805752280|ref|XP_012143908.1| 76 185 . LHQN01023902.1 154 478 + 105 M 67 201 G 1 0 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 155 478 105 + . gene_id 1 ; sequence gi|805752280|ref|XP_012143908.1| ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 155 478 . + . LHQN01023902.1 exonerate:protein2genome:local exon 155 478 . + . insertions 0 ; deletions 1 LHQN01023902.1 exonerate:protein2genome:local similarity 155 478 105 + . alignment_id 1 ; Query gi|805752280|ref|XP_012143908.1| ; Align 155 77 201 ; Align 356 145 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752301|ref|XP_012144307.1| PREDICTED: uncharacterized protein LOC100878986 isoform X5 [Megachile rotundata] Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 76 -> 185 Target range: 154 -> 478 77 : LeuAsnLysIleThrThrGlnGlyAsnArgIleAlaAsnLeuTyrArgThrThrLeuLeuSerP : 98 |||||| ! !|||..! ! !!.. !|||!.!!!.! !! ! !..!!.! !:!! !! LeuAsnAspGlnThrValTyrPheThrTyrIleValLysTyrSerIleValAsnAlaIleValC 155 : TTAAACGACCAAACTGTTTATTTTACGTACATTGTCAAATATTCGATAGTGAACGCGATCGTTT : 218 99 : heLeuMetValPheIleAlaIleProLeuIleProProAlaLeuAspIleIleAlaProLeuAs : 119 !:!!!!::!!|||:!::!!! |||:!!! !|||! ! !|||||||||:!! !||| !|| ysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProLysAs 219 : GTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAAAA : 281 120 : nValThrArgProArgGlnProMetPheArgAlaAsnTyrValIleIleLysValAspAspHis : 140 |! !:!!||| ! ! ! !!!:!:!! !||| !!||| !!! ! !:!! ! ! !! !! nGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAsp 282 : CGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGAC : 344 141 : PhePheValThrTyrValHisMetAlaSerValAlaSerLeuGlyValPheIleIleValThrV : 162 ! !:!:!! !..!||||||||||||||| ! !:!!! ! !!!:!:!: ! !!.!! ValTyrIle---IleThrHisMetAlaSerValIleLeuValValPheTyrValTyrPheAlaC 345 : GTGTACATA---ATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTT : 407 163 : alAspSerLeuTyrMetLeuIleIleHisHisAlaCysGlyLeuPheAspValCysGlyTyrGl : 183 !|||!!! !|||!!:! !:!!:!:!!.|||!.!|||||||||!!.! !|||! !||| :: ysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly***Ly 408 : GTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaa : 470 184 : nValGln : 185 ::::::: sIleArg 471 : aattcga : 478 vulgar: gi|805752301|ref|XP_012144307.1| 76 185 . LHQN01023902.1 154 478 + 105 M 67 201 G 1 0 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 155 478 105 + . gene_id 1 ; sequence gi|805752301|ref|XP_012144307.1| ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 155 478 . + . LHQN01023902.1 exonerate:protein2genome:local exon 155 478 . + . insertions 0 ; deletions 1 LHQN01023902.1 exonerate:protein2genome:local similarity 155 478 105 + . alignment_id 1 ; Query gi|805752301|ref|XP_012144307.1| ; Align 155 77 201 ; Align 356 145 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 341 Query range: 82 -> 212 Target range: 11 -> 466 83 : LysAlaLysPheGluThrLeuLeuHisGlyMetPheAsnAspTrpGluAlaValArgProLysG : 104 ||| !:!!!:!|||:!!|||:!! !||| |||||||||..! !! !||||||:!!! LysLeuGlnTyrGluSerLeuIleSerGlyAlaArgAsnAspTrpSerIleGlyArgProGlnG 12 : AAATTGCAGTACGAGTCGCTTATTAGCGGTGCCAGGAACGACTGGTCGATCGGGAGACCACAAG : 75 105 : luGluValAlaIleMetThrSerTyrMetAspArgGlyAlaPheIleValLeuIleTyrAla{V : 125 !|||:!!! !|||||||||!.!||| !!:||||||||||||:::::: ||| !{| lyGluIleAspIleMetThrLysTyrAlaGluArgGlyAlaPheLeuIleSerThrTyrLeu{V 76 : GGGAGATCGACATTATGACTAAATACGCCGAGAGGGGtgcttttttaatttcgacaTACCTT{G : 138 126 : } >>>> Target Intron 1 >>>> {al}AsnValPheGlyCysThrLeuLeuPheIle : 135 } 65 bp {||}|||!.!.!!! !|||..!:!!||||||:!: }++ ++{al}AsnAlaIleValCysValIleLeuPheVal 139 : }gt.........................ag{TG}AACGCGATCGTTTGTGTCATCCTGTTCGTG : 233 136 : AsnMetProTrpLeuProArgIleAlaAspIleLeuMetProLeuAsnThrSerArgAspArgL : 157 :::! !||| ! !|||!.!||| !|||||||||:!:||| !||| !||||||||| ! SerThrProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValA 234 : TCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAAAACGAGTCACGAGACGTAG : 299 158 : euPheIleIleProAlaCysTyrPheValAspGluAsnLysTyrTyrTyrTrpIleIleAlaHi : 178 !!:!||| !||||||! !||||||..!||||||:!!|||||| !! !::||||||.!!|| laTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHi 300 : CGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCA : 362 179 : sMetThrIleIleIleIleThrAlaGlySerValTyrIleAlaCysAspThrCysPheIleTyr : 199 ||||.!! !:!:|||:!:..!!.! !! !||||||.!!|||||||||||| !!!:!|||||| sMetAlaSerValIleLeuValValPheTyrValTyrPheAlaCysAspThrSerTyrIleTyr 363 : CATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACATATAC : 425 200 : IleValGlnHisAlaCysGlyLeuLeuGlyValAlaGly : 212 :!!|||||||||!.!||||||||||||!.!|||:!!||| ValValGlnHisGlyCysGlyLeuLeuAlaValSerGly 426 : GTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGg : 466 vulgar: gi|383857245|ref|XP_003704115.1| 82 212 . LHQN01023902.1 11 466 + 341 M 42 126 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 12 466 341 + . gene_id 1 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation + LHQN01023902.1 exonerate:protein2genome:local cds 12 138 . + . LHQN01023902.1 exonerate:protein2genome:local exon 12 138 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local splice5 139 140 . + . intron_id 1 ; splice_site "GT" LHQN01023902.1 exonerate:protein2genome:local intron 139 203 . + . intron_id 1 LHQN01023902.1 exonerate:protein2genome:local splice3 202 203 . + . intron_id 0 ; splice_site "AG" LHQN01023902.1 exonerate:protein2genome:local cds 204 466 . + . LHQN01023902.1 exonerate:protein2genome:local exon 204 466 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 12 466 341 + . alignment_id 1 ; Query gi|383857245|ref|XP_003704115.1| ; Align 12 83 126 ; Align 206 126 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754618|ref|XP_012138745.1| PREDICTED: uncharacterized protein LOC100875437 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 144 -> 230 Target range: 4999 -> 5254 145 : GlyIlePheLeuMetIleProLeuIleAlaProLeuLeuAspValValLeuProLeuAsnGl : 165 !.!:!!|||:!! :!:|||!!!:!::!!|||:!!||||||:!!:!!:!!||||||||||| AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGl 5000 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGA : 5060 166 : uThrArgProArgGlnGlnLeuPheLysValAsnTyrValValPheAspGluArgAspTyrP : 186 ||||||| !!||| ! :!!!:! !!.! !!||| !!||| |||||| ! ! ||| uThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal---AspGluAspLysTyrH 5061 : GACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC---GACGAGGACAAATATC : 5120 187 : hePheProValTyrPheGlnLeuAlaIleGlyAlaPheIleIleValThrGlyIleIleThr : 206 !!:! !:!! !!.:!! !:!!! !!.! ! !!::!!:!!:!!! !.!! !.!! isTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 5121 : ATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 5180 207 : IleAspSerLeuTyrMetValIleIleHisTyrAsnSerGlyMetPheAlaValCysGlyTy : 227 !|||:!! !|||:!! ! !:!:!!.:!! !!!!|||:!!!!.|||:!!...|||!! CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly** 5181 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTA : 5243 228 : rGlnValGln : 230 !|||||| *LeuValGln 5244 : ATTAGTTCAA : 5254 vulgar: gi|805754618|ref|XP_012138745.1| 144 230 . LHQN01025741.1 4999 5254 + 120 M 35 105 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5000 5254 120 + . gene_id 1 ; sequence gi|805754618|ref|XP_012138745.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5000 5254 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5000 5254 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 5000 5254 120 + . alignment_id 1 ; Query gi|805754618|ref|XP_012138745.1| ; Align 5000 145 105 ; Align 5105 181 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 343 Query range: 250 -> 385 Target range: 2119 -> 2973 251 : ArgTyrLeuArgAspIleAspAspValHisAlaSerTyrLeuLeuAlaCysLeuGlyIleVa : 271 ||||||:!!! !.!.|||!!:|||||||||!.!|||||||||!!! ! :!!!.!:!!|| ArgTyrIleMetGlnIleGluAspValHisValSerTyrLeuPheIleMetValAlaValVa 2120 : AGATATATTATGCAGATCGAAGACGTTCACGTCTCGTACCTGTTCATAATGGTCGCTGTAGT : 2180 272 : lThrAlaAlaPheSerAlaThrLeuAlaLeu >>>> Target Intron 1 >>>> Le : 282 |..! !:!!|||||| !:!!|||!.! ! 77 bp lValLeuSerPheSerIleSerLeuValArg++ ++Th 2181 : CGTGCTGTCGTTCAGTATCTCTCTAGTCAGGgt.........................agAC : 2290 283 : uSerGluLeuAspIleCysLeuGluPheTyrGlnGlyLeuGlyPheLeuValValGlnLeuM : 303 !||| !:!!||| !|||:!!|||||||||:!! !! !|||||||||||||||||||||: rSerMetMetAspProCysMetGluPheTyrLysTyrCysGlyPheLeuValValGlnLeuV 2291 : GTCCATGATGGACCCTTGCATGGAGTTCTACAAGTATTGCGGTTTCTTGGTGGTGCAACTGG : 2353 304 : etHisLeuPhePheLeuThrLeuHisGlyGluPheValIleGluSerAsnAspLysAlaTyr : 323 !:||||||.!!||||||:!!:!!!!.|||.!.|||:!!||| |||:!!|||! !.!!||| alHisLeuLeuPheLeuSerIleGlnGlyHisPheIleIleLeuSerHisAspMetThrTyr 2354 : TTCATTTGCTTTTCCTTTCTATCCAGGGACACTTTATTATACTCTCGCATGACATGACTTAC : 2413 324 : AsnGln{Il} >>>> Target Intron 2 >>>> {e}TyrGluGlyLeuTrpTyrAs : 333 :!!.!.{||} 133 bp {|}|||...!.! !|||||||| AspAsn{Il}++ ++{e}TyrSerAlaLysTrpTyrAs 2414 : GACAAC{AT}gt.........................ag{A}TATAGCGCAAAATGGTACAA : 2576 334 : nAlaAlaProLysAlaGlnAlaLeuTyrValLeuAlaLeuArgAlaSerAlaAlaAlaProG : 354 |::!:!!|||!:!.!!|||.!!||||||||||||||||||||| !||| !.!! !!||| nSerSerProArgThrGlnThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProL 2577 : CAGTTCGCCGAGAACGCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCAT : 2639 355 : lnIleThrAlaGlyGlyGlnIleProMetAsnLeuGluThrPheAlaVal >>>> Targe : 371 !:!!||||||||||||! !||| !!:!!||||||||||||||||||! ! euLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGlu++ 2640 : TGCTCACTGCGGGAGGACTGATTTCCTTGAATTTGGAGACTTTTGCCGAGgt.......... : 2692 372 : t Intron 3 >>>> IleIleLysAlaSerValSerTyrPheThrMetLeuLysSerThr : 385 239 bp |||:!!|||||||||||||||:::||||||:!::!!||||||||| ++IleLeuLysAlaSerValSerPhePheThrValMetLysSerThr 2693 : ...............agaTCTTAAAAGCAtccgtttcctttttcacgGTAATGAAATCGACA : 2971 vulgar: gi|383857245|ref|XP_003704115.1| 250 385 . LHQN01025741.1 2119 2973 + 343 M 31 93 5 0 2 I 0 73 3 0 2 M 44 132 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 44 132 5 0 2 I 0 235 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 2120 2973 343 + . gene_id 1 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 2120 2212 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2120 2212 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 2213 2214 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 2213 2289 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 2288 2289 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 2290 2423 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2290 2423 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 2424 2425 . + . intron_id 2 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 2424 2556 . + . intron_id 2 LHQN01025741.1 exonerate:protein2genome:local splice3 2555 2556 . + . intron_id 1 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 2557 2689 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2557 2689 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 2690 2691 . + . intron_id 3 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 2690 2928 . + . intron_id 3 LHQN01025741.1 exonerate:protein2genome:local splice3 2927 2928 . + . intron_id 2 ; splice_site "ag" LHQN01025741.1 exonerate:protein2genome:local cds 2929 2973 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2929 2973 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 2120 2973 343 + . alignment_id 1 ; Query gi|383857245|ref|XP_003704115.1| ; Align 2120 251 93 ; Align 2290 282 132 ; Align 2558 327 132 ; Align 2929 371 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 262 Query range: 116 -> 212 Target range: 4954 -> 5242 117 : AlaPheIleValLeuIleTyrAlaValAsnValPheGlyCysThrLeuLeuPheIleAsnMe : 137 :!!||| ! !! !.!! ! .!!|||:!!:!!! !|||.!! !||||||!!: !:! SerPheTyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLe 4955 : TCATTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTT : 5015 138 : tProTrpLeuProArgIleAlaAspIleLeuMetProLeuAsnThrSerArgAspArgLeuP : 158 !|||!:::!! !!! !||| !||||||||||||||||||||| !!!!|||! ||||||| uProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuP 5016 : GCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGT : 5078 159 : heIleIleProAlaCysTyrPheValAspGluAsnLysTyrTyrTyrTrpIleIleAlaHis : 178 ||:!! !||||||! !|||||||||||||||:!!||||||:!!|||! !|||:!!!.!||| heValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHis 5079 : TCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCAT : 5138 179 : MetThrIleIleIleIleThrAlaGlySerValTyrIleAlaCysAspThrCysPheIleTy : 199 ||| !:!!:!!:!::!!! ! ! !||||||!:! !|||||||||.!! !!:!:!:|| MetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTy 5139 : ATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTA : 5201 200 : rIleValGlnHisAlaCysGlyLeuLeuGlyValAlaGly : 212 | !||||||||||||||||||||||||!.!:!!|||||| rAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5202 : CGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5242 vulgar: gi|383857245|ref|XP_003704115.1| 116 212 . LHQN01025741.1 4954 5242 + 262 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4955 5242 262 + . gene_id 2 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4955 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4955 5242 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4955 5242 262 + . alignment_id 2 ; Query gi|383857245|ref|XP_003704115.1| ; Align 4955 117 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 231 Query range: 269 -> 385 Target range: 12161 -> 13062 270 : IleValThrAlaAlaPheSerAlaThrLeuAlaLeuLeuSerGluLeuAspIleCysLeu : 289 :!!::: ... |||||| !! !|||||| ! !|||:!! !:!! LeuIleCysGlyAsnPheSerLeuPheSerAsnGlnLeuSerThrAlaAspLeuAspIle 12162 : TTAAtctgtggaaatttttcactgttttcaaATCAGCTGAGTACGGCGGATTTAGATATA : 12219 290 : GluPheTyrGlnGlyLeuGlyPheLeuValValGlnLeuMetHisLeuPhePheLeuThr : 309 .!.||||||::!..!! !.!!|||:!!:!! !|||||||||||||||||| !!:!!! ! AsnPheTyrArgAsnCysSerPheMetLeuCysGlnLeuMetHisLeuPheValIleMet 12220 : AACTTCTACAGAAACTGCAGTTTCATGTTGTGTCAACTGATGCATCTATTTGTCATCATG : 12279 310 : LeuHisGlyGluPheValIleGluSerAsnAspLysAlaTyrAsnGln{Il} >>>> T : 326 |||!!.|||:!!||||||:!:!!:||| !|||!:! !:!! !{||} LeuGlnGlyGlnPheValLeuAspSerCysAspArgIleHisAlaAla{Il}++ 12280 : CTTCAGGGACAGTTCGTGCTGGATTCGTGCGACAGAATTCACGCGGCG{AT}gt...... : 12334 327 : arget Intron 1 >>>> {e}TyrGluGlyLeuTrpTyrAsnAlaAlaProLysAla : 338 470 bp {|}||||||..!|||||||||!..::!:!! !!|||.!! ++{e}TyrGluSerLeuTrpTyrThrSerSerSerLysThr 12335 : ...................ag{A}TACGAATCATTATGGTACACAAGTTCTTCGAAAACA : 12836 339 : GlnAlaLeuTyrValLeuAlaLeuArgAlaSerAlaAlaAlaProGlnIleThrAlaGly : 358 |||||||||||||||:!!||||||||| !!:! !.!! !! !! :!!||||||||| GlnAlaLeuTyrValValAlaLeuArgArgAsnLeuThrProThrCysLeuThrAlaGly 12837 : CAAGCATTATACGTGGTAGCGTTACGAAGAAACCTAACACCTACCTGTTTAACGGCTGGC : 12896 359 : GlyGlnIleProMetAsnLeuGluThrPheAlaVal >>>> Target Intron 2 > : 371 ||| !:!:! !:!!|||:!!! !!:!||| !! ! 83 bp GlyLeuValGlnLeuAsnMetAlaSerPheLeuGlu++ 12897 : GGTTTAGTGCAACTGAACATGGCAAGTTTCTTGGAGgt...................... : 12937 372 : >>> IleIleLysAlaSerValSerTyrPheThrMetLeuLysSerThr : 385 :!::!!||| !||||||||||||!:!|||:!!||||||!!!||| ++ValValLysMetSerValSerTyrTyrThrValLeuLysThrThr 12938 : ...agGTGGTAAAAATGTCCGTATCCTATTATACGGTGTTGAAGACAACG : 13062 vulgar: gi|383857245|ref|XP_003704115.1| 269 385 . LHQN01025741.1 12161 13062 + 231 M 56 168 S 0 2 5 0 2 I 0 466 3 0 2 S 1 1 M 44 132 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 12162 13062 231 + . gene_id 3 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 12162 12331 . + . LHQN01025741.1 exonerate:protein2genome:local exon 12162 12331 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 12332 12333 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 12332 12801 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 12800 12801 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 12802 12934 . + . LHQN01025741.1 exonerate:protein2genome:local exon 12802 12934 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 12935 12936 . + . intron_id 2 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 12935 13017 . + . intron_id 2 LHQN01025741.1 exonerate:protein2genome:local splice3 13016 13017 . + . intron_id 1 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 13018 13062 . + . LHQN01025741.1 exonerate:protein2genome:local exon 13018 13062 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 12162 13062 231 + . alignment_id 3 ; Query gi|383857245|ref|XP_003704115.1| ; Align 12162 270 168 ; Align 12803 327 132 ; Align 13018 371 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 222 Query range: 122 -> 212 Target range: 11465 -> 11735 123 : TyrAlaValAsnValPheGlyCysThrLeuLeuPheIleAsnMetProTrpLeuProArg : 142 !:! !!||||||!.!!:! !|||:!!!!!|||||||||.!.:!!|||||| ! !!||| PheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArg 11466 : TTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGA : 11523 143 : IleAlaAspIleLeuMetProLeuAsnThrSerArgAspArgLeuPheIleIleProAla : 162 :!:!.!:!! ! !! ! !!! !|||! !!!!! !..! !! !|||:!!||||||!.! LeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuGlnPheValIleProGly 11524 : TTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGA : 11583 163 : CysTyrPheValAspGluAsnLysTyrTyrTyrTrpIleIleAlaHisMetThrIleIle : 182 ! !||||||||||||||| :!!|||||||||!::|||||| !||| ||| !! ! TyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThr 11584 : TATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACA : 11643 183 : IleIleThrAlaGlySerValTyrIleAlaCysAspThrCysPheIleTyrIleValGln : 202 :!!:!:! !!.!! ! !|||||| !|||||||||||| !!!:!!!: :!:|||||| ValLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGln 11644 : GTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAA : 11703 203 : HisAlaCysGlyLeuLeuGlyValAlaGly : 212 |||.!!|||||||||!!!!.!||||||||| HisThrCysGlyLeuPheAlaValAlaGly 11704 : CACACTTGCGGACTGTTCGCCGTGGCCGGG : 11735 vulgar: gi|383857245|ref|XP_003704115.1| 122 212 . LHQN01025741.1 11465 11735 + 222 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11466 11735 222 + . gene_id 4 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11466 11735 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11466 11735 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11466 11735 222 + . alignment_id 4 ; Query gi|383857245|ref|XP_003704115.1| ; Align 11466 123 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 215 Query range: 120 -> 212 Target range: 1555 -> 1831 121 : LeuIleTyrAlaValAsnValPheGlyCysThrLeuLeuPheIleAsnMetProTrpLeuPr : 141 ||| !!:!.!!||||||! !.!. !||| !:!!:!!|||! !::::!! !! !|| LeuTyrPheThrValAsnGlyLeuPheCysTyrValIlePheThrSerValAlaIleThrPr 1556 : CTGTATTTCACAGTAAACGGACTGTTTTGCTACGTTATATTCACCTCAGTGGCGATTACGCC : 1616 142 : oArgIleAlaAspIleLeuMetProLeuAsnThrSerArgAspArgLeuPheIleIleProA : 162 ||||:!! !|||:!!:!! ||| !||| !||||||! ! !|||||| !|||| oArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValAspPheIleTyrProA 1617 : TCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTCATTTATCCTG : 1679 163 : laCysTyrPheValAspGluAsnLysTyrTyrTyrTrpIleIleAlaHisMetThrIleIle : 182 ||! !||| !:!!||||||.!.:!!:!!|||||| :!:!!:!.!|||||| ! !:!: laTyrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHisMetLeuCysVal 1680 : CATACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCACATGCTCTGCGTG : 1739 183 : IleIleThrAlaGlySerValTyrIleAlaCysAspThrCysPheIleTyrIleValGlnHi : 203 |||! !..!!.! !! !|||||||||:!!||||||||| !!:!!!: !!||||||||||| IleThrValValPhePheValTyrIleSerCysAspThrIleTyrMetAsnIleValGlnHi 1740 : ATAACTGTAGTGTTTTTCGTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCAACA : 1802 204 : sAlaCysGlyLeuLeuGlyValAlaGly : 212 ||||||||||||||||..!|||:!!||| sAlaCysGlyLeuLeuAsnValSerGly 1803 : CGCGTGCGGATTACTGAACGTCTCTGGG : 1831 vulgar: gi|383857245|ref|XP_003704115.1| 120 212 . LHQN01025741.1 1555 1831 + 215 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1556 1831 215 + . gene_id 5 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1556 1831 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1556 1831 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1556 1831 215 + . alignment_id 5 ; Query gi|383857245|ref|XP_003704115.1| ; Align 1556 121 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 326 -> 384 Target range: 9281 -> 9540 327 : TyrGluGlyLeuTrpTyrAsnAlaAlaProLysAlaGlnAlaLeuTyrValLeuAlaLeuAr : 347 ||||||..!! !||||||||| !.!!|||!:!.!!|||||||||||||||||||||||||| TyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeuAr 9282 : TACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTGAG : 9342 348 : gAlaSerAlaAlaAlaProGlnIleThrAlaGlyGlyGlnIleProMetAsnLeuGluThrP : 368 |::!!!! ! ! !!|||! !:!!||||||||||||..!! !!:!!||||||..!:!!| gSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSerP 9343 : AAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATCGT : 9405 369 : heAlaVal >>>> Target Intron 1 >>>> IleIleLysAlaSerValSerTyrP : 379 |||||! ! 85 bp ||||||||||||||||||||||||! heAlaGlu++ ++IleIleLysAlaSerValSerTyrT 9406 : TCGCAGAGgt.........................agATCATCAAAGCATCTGTTTCCTACT : 9523 380 : heThrMetLeuLysSer : 384 :!|||:!!:!!:!!!!! yrThrValMetGlnThr 9524 : ACACGGTGATGCAGACC : 9540 vulgar: gi|383857245|ref|XP_003704115.1| 326 384 . LHQN01025741.1 9281 9540 + 167 M 44 132 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 9282 9540 167 + . gene_id 6 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 9282 9413 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9282 9413 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 9414 9415 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 9414 9498 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 9497 9498 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 9499 9540 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9499 9540 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 9282 9540 167 + . alignment_id 6 ; Query gi|383857245|ref|XP_003704115.1| ; Align 9282 327 132 ; Align 9499 371 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 326 -> 384 Target range: 6187 -> 6438 327 : TyrGluGlyLeuTrpTyrAsnAlaAlaProLysAlaGlnAlaLeuTyrValLeuAlaLeuAr : 347 ||||||..! !|||||||||:!!:!! !|||.!!||||||||||||:!!||||||||||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeuAr 6188 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTACG : 6248 348 : gAlaSerAlaAlaAlaProGlnIleThrAlaGlyGlyGlnIleProMetAsnLeuGluThrP : 368 |::!||| ! ! !!||| !:!!|||||||||||| ||| !!:!!||||||:!!|||| gSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLysThrP 6249 : GAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAGACCT : 6311 369 : heAlaValIle{Il} >>>> Target Intron 1 >>>> {e}LysAlaSerValSer : 377 ||:!!! !:!!{! } 77 bp {!}|||:!!||||||||| heSerGluVal{Th}++ +-{r}LysSerSerValSer 6312 : TCTCAGAGGTA{AC}gt.........................at{A}AAATCATCCGTGTCT : 6415 378 : TyrPheThrMetLeuLysSer : 384 |||!:!|||:!!:!!:!!||| TyrTyrThrValMetGlnSer 6416 : TACTATACGGTGATGCAATCG : 6438 vulgar: gi|383857245|ref|XP_003704115.1| 326 384 . LHQN01025741.1 6187 6438 + 140 M 45 135 S 0 2 5 0 2 I 0 73 3 0 2 S 1 1 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 6188 6438 140 + . gene_id 7 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 6188 6324 . + . LHQN01025741.1 exonerate:protein2genome:local exon 6188 6324 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 6325 6326 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 6325 6401 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 6400 6401 . + . intron_id 0 ; splice_site "AT" LHQN01025741.1 exonerate:protein2genome:local cds 6402 6438 . + . LHQN01025741.1 exonerate:protein2genome:local exon 6402 6438 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 6188 6438 140 + . alignment_id 7 ; Query gi|383857245|ref|XP_003704115.1| ; Align 6188 327 135 ; Align 6403 373 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752313|ref|XP_012144604.1| PREDICTED: uncharacterized protein LOC100878875 isoform X2 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 95 -> 175 Target range: 5005 -> 5242 96 : PheIleTyrIleProLeuIleAsnProThrLeuAspLeuIleIleProLeuAsnGluThrAr : 116 |||!!:! !:!:|||!!!:!::::|||! !||||||:!!:!!!!:||||||||||||||||| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5006 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5066 117 : gProLysGluGlnLeuPheGlyValCysTyrValPheIleAsnProAspAspTyrPheThrA : 137 | !!::! ! :!!!:! !..!||| !|||:!!:!! !||| ! ||| ! ! gAlaArgLeuPheValTyr---ProAlaTyrTyrPheValAspGluAspLysTyrHisTyrL 5067 : AGCACGGTTGTTCGTCTAT---CCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACT : 5126 138 : laValPheLeuHisMetGlyTrpThrThrTrpValThrValTyrAsnIleIleThrValAsp : 157 !:!! ! !|||||| ! ..!..! :!! !:!!! ! !.!! !.!! !||| euIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAsp 5127 : TGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGAT : 5186 158 : SerLeuTyrIleLeuIleIleHisHisValCysGlyLeuPheAspValCysGly : 175 :!! !|||:!:! ! !:!:!!.|||!.!|||||||||!!.! !:!!...||| AlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5187 : GCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5242 vulgar: gi|805752313|ref|XP_012144604.1| 95 175 . LHQN01025741.1 5005 5242 + 121 M 27 81 G 1 0 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5006 5242 121 + . gene_id 1 ; sequence gi|805752313|ref|XP_012144604.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5006 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5006 5242 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 5006 5242 121 + . alignment_id 1 ; Query gi|805752313|ref|XP_012144604.1| ; Align 5006 96 81 ; Align 5087 124 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754729|ref|XP_012138996.1| PREDICTED: uncharacterized protein LOC100875216 [Megachile rotundata] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 132 -> 253 Target range: 4969 -> 5329 133 : PheTyrArgValThrLeuIleLeuAlaAlaLeuValPheIleTyrIleProLeuIleAsnPr : 153 ||| ! ! !||| !:!! |||..!||| !:!!|||!!:! !:!:|||!!!:!::::|| PheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerPr 4970 : TTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCC : 5030 154 : oThrLeuAspLeuIleMetProIleAsnGlyThrArgProLysGlnGlnLeuPheGlyAlaC : 174 |! !||||||:!!:!!||||||:!:|||! !|||||| !!::! ! :!!!:! !||| oIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAla- 5031 : GATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCT- : 5093 175 : ysTyrValPheValGluAlaAspAspHisPheAlaAlaValPheLeuHisLeuGlyTrpThr : 194 ||| !||||||!!:! !||| ! :!! ! ! !:!! ! !|||:!! ! ..! --TyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuVal 5094 : --TACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTA : 5150 195 : ThrPheValThrValTyrAsnValSerIleValAspSerLeuTyrIleLeuIleIleHisHi : 215 ..! ! :!! !:!!! ! ! !!!!! ! !|||:!! !|||:!:! ! !:!:!!.|| ValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHi 5151 : GTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACA : 5213 216 : sValCysGlyLeuPheAspValCysGlyTyrGlnIleGluThrAlaThrGlnAspProGluM : 236 |!.!|||||||||!!.! !:!!...|||!! !:!!:!! ! ! !..!!!: !! . sAlaCysGlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGluAsnGlyP 5214 : CGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAATGGTT : 5276 237 : etArgTyrAspGlnPheLysGlnCysValMetThrHisHisLysAlaLeuLeu : 253 !.! !||| .!.||| ! ! !:!:.!!.!.:!!!!...!|||||| heLeuTyrArgAsnPheValGlyPheCysLeuAlaGluAsnAsnCysLeuLeu 5277 : TTCTTTATAGAAATTTCGTTGGCTTTTGTTTAGCTGAAAACAATTGTCTGTTG : 5329 vulgar: gi|805754729|ref|XP_012138996.1| 132 253 . LHQN01025741.1 4969 5329 + 134 M 41 123 G 1 0 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4970 5329 134 + . gene_id 1 ; sequence gi|805754729|ref|XP_012138996.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4970 5329 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4970 5329 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 4970 5329 134 + . alignment_id 1 ; Query gi|805754729|ref|XP_012138996.1| ; Align 4970 133 123 ; Align 5093 175 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 251 Query range: 122 -> 323 Target range: 1257 -> 375 123 : TyrAlaValAsnValPheGlyCysThrLeuLeuPheIleAsnMetProTrpLeuProArgIl : 143 !:! !!||||||!.!!:! !|||:!!!!!|||||||||.!.:!!|||||| ! !!|||!! PheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArgMe 1257 : TTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGAAT : 1197 144 : eAlaAspIleLeuMetProLeuAsnThrSerArgAspArgLeuPheIleIleProAlaCysT : 164 :!.!:!! ! !! ! !!! !|||! !!!!! !..! !! ! !!:!!:!!|||!.!! !| tValAsnSerTyrLysThrGlnAsnIleThrProSerLeuProValValValProGlyTyrT 1196 : GGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGATATT : 1134 165 : yrPheValAspGluAsnLysTyrTyrTyrTrpIleIleAlaHisMetThrIleIleIleIle : 184 |||||||||||||| :!!|||||||||!::|||||| !||| ||| !! !:!!:!: yrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeu 1133 : ACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTG : 1074 185 : ThrAlaGlySerValTyrIleAlaCysAspThrCysPheIleTyrIleValGlnHisAlaCy : 205 ! !!.!! ! !|||||| !|||||||||||| !!!:!!!: :!:|||||||||.!!|| IleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCy 1073 : ATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTG : 1011 206 : sGlyLeuLeuGlyValAla{Gl} >>>> Target Intron 1 >>>> {y}TyrArgP : 215 |||||||!!!!.!||||||{||} 279 bp {|} !|||| sGlyLeuPheAlaValAla{Gl}++ --{y}ArgArgP 1010 : CGGACTGTTCGCCGTGGCC{GG}gt.........................ta{C}CGCCGTT : 702 216 : heLysGluAlaValAspGluMetSerLysGluArgLysIleAlaAspLeuSerAsnGluThr : 235 ||... ! ! !..! ...! !!.. !||| ! !!!:! !.!!:!!!!:||| heSerLeuIleArgSerLeuGlnPheSerPheValLysGluIleGluArgGlyHisAspThr 701 : TCTCTTTGATTCGTTCTCTTCAATTCAGCTTTGTAAAGGAAATTGAACGCGGCCATGACACG : 642 236 : TyrMetLysValArgArgSerValGlnGlyHisValArgAlaLeuArgTyrLeuArgAspIl : 256 |||:!: ..! !! !:!!:!! ! !! ! !::!:!!! ! :!!!:!! TyrLeuPheThrCysLeuAlaLeuValIleLeuCysPheSerIleThrLeuIleLysValSe 641 : TACCTTTTCACCTGCTTAGCCTTGGTGATTCTATGCTTCAGTATTACTCTGATCAAGGTGag : 579 257 : eAspAspValHisAlaSerTyrLeuLeuAlaCysLeuGlyIleValThrAlaAlaPheSerA : 277 |||||| !! ! !! ! ! !!:!!::: ... |||||| rPheLeuPheProLeuSerTyrAspTyrIleSerArgCysLeuIleCysGlyAsnPheSerL 578 : cttcctttttcctctttcctaCGACTACATTTCGCGTTGTTTAAtctgtggaaatttttcac : 516 278 : laThrLeuAlaLeuLeuSerGluLeuAspIleCysLeuGluPheTyrGlnGlyLeuGlyPhe : 297 !! !|||||| !! !|||.!! !:!!!!:||||||::! !! !.!!||| euPheSerAsnGlnLeuSerThrSerAspPheAspIleAspPheTyrArgTyrCysSerPhe 515 : tgttttcaaATCAGCTGAGTACGTCGGATTTCGACATAGACTTCTACAGATATTGCAGTTTT : 456 298 : LeuValValGlnLeuMetHisLeuPhePheLeuThrLeuHisGlyGluPheValIleGluSe : 318 !:!! !|||||||||||||||||| !!:!!! !|||!!.|||:!!||||||:!:!!:|| ThrLeuCysGlnLeuMetHisLeuPheValIleMetLeuGlnGlyGlnPheValLeuAspSe 455 : ACGTTGTGTCAACTGATGCACCTGTTCGTTATCATGCTTCAGGGACAGTTCGTGCTGGATTC : 393 319 : rAsnAspLysAlaTyr : 323 | !!!:!:! !:!! rCysGluArgIleHis 392 : GTGCGAGAGAATTCAC : 376 vulgar: gi|383857245|ref|XP_003704115.1| 122 323 . LHQN01027734.1 1257 375 - 251 M 89 267 S 0 2 5 0 2 I 0 275 3 0 2 S 1 1 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 376 1257 251 - . gene_id 1 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation + LHQN01027734.1 exonerate:protein2genome:local cds 989 1257 . - . LHQN01027734.1 exonerate:protein2genome:local exon 989 1257 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 987 988 . - . intron_id 1 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 710 988 . - . intron_id 1 LHQN01027734.1 exonerate:protein2genome:local splice3 710 711 . - . intron_id 0 ; splice_site "TA" LHQN01027734.1 exonerate:protein2genome:local cds 376 709 . - . LHQN01027734.1 exonerate:protein2genome:local exon 376 709 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 376 1257 251 - . alignment_id 1 ; Query gi|383857245|ref|XP_003704115.1| ; Align 1258 123 267 ; Align 709 213 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 167 Query range: 326 -> 384 Target range: 2814 -> 2555 327 : TyrGluGlyLeuTrpTyrAsnAlaAlaProLysAlaGlnAlaLeuTyrValLeuAlaLeuAr : 347 ||||||..!! !||||||||| !.!!|||!:!.!!|||||||||||||||||||||||||| TyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeuAr 2814 : TACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTGAG : 2754 348 : gAlaSerAlaAlaAlaProGlnIleThrAlaGlyGlyGlnIleProMetAsnLeuGluThrP : 368 |::!!!! ! ! !!|||! !:!!||||||||||||..!! !!:!!||||||..!:!!| gSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSerP 2753 : AAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATCGT : 2691 369 : heAlaVal >>>> Target Intron 1 >>>> IleIleLysAlaSerValSerTyrP : 379 |||||! ! 85 bp ||||||||||||||||||||||||! heAlaGlu++ ++IleIleLysAlaSerValSerTyrT 2690 : TCGCAGAGgt.........................agATCATCAAAGCATCTGTTTCCTACT : 2573 380 : heThrMetLeuLysSer : 384 :!|||:!!:!!:!!!!! yrThrValMetGlnThr 2572 : ACACGGTGATGCAGACC : 2556 vulgar: gi|383857245|ref|XP_003704115.1| 326 384 . LHQN01027734.1 2814 2555 - 167 M 44 132 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 2556 2814 167 - . gene_id 2 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation + LHQN01027734.1 exonerate:protein2genome:local cds 2683 2814 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2683 2814 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 2681 2682 . - . intron_id 1 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 2598 2682 . - . intron_id 1 LHQN01027734.1 exonerate:protein2genome:local splice3 2598 2599 . - . intron_id 0 ; splice_site "AG" LHQN01027734.1 exonerate:protein2genome:local cds 2556 2597 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2556 2597 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 2556 2814 167 - . alignment_id 2 ; Query gi|383857245|ref|XP_003704115.1| ; Align 2815 327 132 ; Align 2598 371 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 325 Query range: 0 -> 159 Target range: 474 -> 3 1 : MetIleGluArgGluLeuAspSerSerSerAspTyrSerLeuGlnValAsnArgTrpTyrLeuL : 22 :!:! !|||! !.!.:!! !:!!||||||||||||||||||||| !||||||||| :!!| ValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetL 474 : GTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGA : 411 23 : ysSerIleGlyAlaTrpProSerSerSerPheAlaProArgPheGluArgIleValSerValVa : 43 |||||||||||.!!|||||| ..!|||:!! !!!.!.!!||||||! !:!!||| !:! ysSerIleGlyThrTrpPro------GlnPheSerSerAsnLeuGluArgAsnIleSerArgIl 410 : AAAGCATAGGCACATGGCCA------CAGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAAT : 354 44 : lLeuIleIleIleCysTyrCysSerMetLeuPheThrGlyIleProCysIleLeuHisIleLeu : 64 !|||! !:!:||||||||| !:!!!!:||||||:!! !||||||||| ||||||:!!:!! eLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMet 353 : ATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATG : 291 65 : LeuGluAspGluAspLeuArgLysLysLeuArgAlaThrGlyProLeuIleAsnMetPheMetG : 86 |||||| ! ! ! !!!! !! !|||:!!!:! ! !|||||||||! !:!! ! ! .!. LeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyProLeuSerHisTrpValPheC 290 : CTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCT : 225 87 : lySerIleLysTyrSerThrLeuLeuPheArgGlyAsnGluIleArgAspCysValGluHisIl : 107 !!! !|||!..|||!!!! !||||||.!.||| !!!!. |||!.! !!! !|||.!.|||!! ysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPheValAsnHisMe 224 : GTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTTTGTCAATCATAT : 162 108 : eGlnValAspTrpGlnIleValSerArgValArgHisArgLeuValMetThrSerTyrAlaLys : 128 ::!!..!||||||::!! ..!:::||| ... ::: |||||| !!.!||||||||| tGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLys 161 : GGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGCTGAAGTACGCAAAA : 99 129 : PheGlyArgTyrValSerValPheCysAlaAlaPheThrGlnLeuGlyValAlaSerTyrCysP : 150 |||.!!||||||!.!:!!:!!||||||||| !|||! !!!. !|||:!! !.!!|||||| PheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleLeuGlyTyrCysV 98 : TTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTATACTTGGATATTGTG : 33 151 : heValAsnAlaLeuSerThrArgSerVal : 159 !!:!!!..|||! !!!!|||! ! !||| alMetThrAlaSerThrThrMetValVal 32 : TTATGACAGCGTCCACCACGATGGTTGTC : 4 vulgar: Lalb_14617 0 159 . LHQN01027980.1 474 3 - 325 M 28 84 G 2 0 M 129 387 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4 474 325 - . gene_id 1 ; sequence Lalb_14617 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4 474 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4 474 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 4 474 325 - . alignment_id 1 ; Query Lalb_14617 ; Align 475 1 84 ; Align 391 31 387 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 270 Query range: 295 -> 386 Target range: 4581 -> 4216 296 : GluTrpAspAspArgAspTyrGlnAsnLeuSerCysTyrPheMetIleLeuPheSerMetTh : 316 |||||| !!:!!!||| !|||! |||! ! |||.!!:!:! !||| !!:!!:!:.. GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValVa 4581 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTGT : 4521 317 : rPheAsnValPheLeuLeuCysTyrIleGlyGlnThrLeuThrGluGln >>>> Target : 333 ! |||...||||||:::|||||||||.!!.!.! !|||||||||||| 9 lSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4520 : TtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt........... : 4468 334 : Intron 1 >>>> CysLysLysValGlyGluValValTyrMetThrAsnTrpTyrPheL : 348 2 bp ||| !|||||||||||||||||||||||||||:!!||||||!:!| ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrL 4467 : ..............agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATC : 4333 349 : euProArgArgCysIleLeuAspLeuArgMetIleIleValArgSerSerValMetIleLys : 368 |||||!:!||| ! ||||||||||||! !:!!||||||..!||||||!:!|||:!::!!:!! euProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGlu 4332 : TGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAA : 4273 369 : IleThrAlaSerLysMetPheHisMetSerValTyrThrPheGlyGlnValSer : 386 |||||||||...|||:::||||||||||||:!!||||||||||||.!.|||||| IleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSer 4272 : ATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGT : 4217 vulgar: Lalb_14617 295 386 . LHQN01027980.1 4581 4216 - 270 M 37 111 5 0 2 I 0 88 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4217 4581 270 - . gene_id 2 ; sequence Lalb_14617 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4581 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4581 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4217 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4217 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4217 4581 270 - . alignment_id 2 ; Query Lalb_14617 ; Align 4582 296 111 ; Align 4379 333 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 334 -> 388 Target range: 1981 -> 1813 335 : LysValGlyGluValValTyrMetThrAsnTrpTyrPheLeuProArgArgCysIleLeuAs : 355 |||||||||! ! !||||||||||||.!.|||||| ||| !!!:!!:! ! !|||! LysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGl 1981 : AAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGG : 1921 356 : pLeuArgMetIleIleValArgSerSerValMetIleLysIleThrAlaSerLysMetPheH : 376 !!!! !||||||||| !|||||||||:!!:!!|||||||||||||||.!!|||.!. ! : yPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheValT 1920 : TTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTAT : 1858 377 : is<-><->MetSerValTyrThrPheGlyGlnValSerMetSer : 388 !! !|||||| |||||||||.!.||||||:::::: yr***ThrSerSerValAlaThrPheGlyAspValSerIleAsn 1857 : ACTGAACATCGTCTGTCGCAACATTTGGCGATGTGagtattaat : 1814 vulgar: Lalb_14617 334 388 . LHQN01027980.1 1981 1813 - 111 M 42 126 G 0 6 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1814 1981 111 - . gene_id 3 ; sequence Lalb_14617 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1814 1981 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1814 1981 . - . insertions 6 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1814 1981 111 - . alignment_id 3 ; Query Lalb_14617 ; Align 1982 335 126 ; Align 1850 377 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14618 [mRNA] [translate_table: standard] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 334 -> 389 Target range: 4378 -> 4213 335 : CysSerLysIleGlyProAlaAlaTyrGluIleAspTrpTyrAsnLeuProTyrLysLysAl : 355 |||! !|||:!!||| !!.!!.!||| !! !||||||||| !!|||||| ! !:!!:! CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIl 4378 : TGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAAT : 4318 356 : aHisAspLeuIleLeuLeuSerValValSerAsnTyrProProLysLeuThrAlaGlyLysI : 376 !! !||||||||||||:!!! !..! !|||||| ! !:!!:!!||||||||||||| eLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLysI 4317 : CCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaaaa : 4255 377 : lePheThrLeuSerLeuAsnThrPheSerSerValGlyAsp : 389 ||||| :::|||||| !!||||||.!!..!|||.!!!!: lePheHisMetSerLeuTyrThrPheGlyAspValSerGlu 4254 : tattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAA : 4214 vulgar: Lalb_14618 334 389 . LHQN01027980.1 4378 4213 - 132 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4214 4378 132 - . gene_id 1 ; sequence Lalb_14618 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4214 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4214 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4214 4378 132 - . alignment_id 1 ; Query Lalb_14618 ; Align 4379 335 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 184 Query range: 43 -> 159 Target range: 384 -> 36 44 : GlySerArgLeuGluArgValLeuSerIleProLeuMetLeuIleCysPheSerSerLeuPheP : 65 ..!|||!.!||||||||| !:!!||| ! !|||! :!!||||||!:!!!!:!!:!!.!.| SerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuP 384 : TCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTAT : 321 66 : heIleIleLeuProSerValTyrAsnMetLeuPheMetGluGluAspLeuGlnAsnIleValLy : 86 || |||:!!|||!!! !! :!!:!::!!.!. :!!! ! !!!! ! !..! !||||| heSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLy 320 : TCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAA : 258 87 : sLeuLeuGlyProIleSerPheCysMetPheSerThrIleLysTyrCysLeuLeuGlyMetLys : 107 |:!!|||||||||:!:||| !!! :!!|||!!!! !|||!..||| !:!!||| !:!!::! sIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArg 257 : AATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGA : 195 108 : GlyAsnThrLeuGlyGlnCysIleLeuHisLeuGluArgAspTrpLysMetValGlnAspProA : 129 !!!!.|||:!! !!!.! !:!! !|||:!!|||! !||||||!:!! !..! : ArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysG 194 : CGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaagg : 129 130 : spHisArgAlaIleMetLeuLysGlnAlaSerThrSerArgPheLeuIleThrIleCysValGl : 150 :: ::: :::||||||||| ! |||!.! !||||||!:! ! ! !.!!|||!.! luLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIl 128 : agaagaaagaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGAT : 66 151 : yPheLeuTyrSerGlyGlyMetSerTyr : 159 !|||:!!:!!.!!||| !:!:.!!||| ePheIleHisGlyGlyIleLeuGlyTyr 65 : CTTCATACACGGTGGTATACTTGGATAT : 37 vulgar: Lalb_14616 43 159 . LHQN01027980.1 384 36 - 184 M 116 348 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 37 384 184 - . gene_id 1 ; sequence Lalb_14616 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 37 384 . - . LHQN01027980.1 exonerate:protein2genome:local exon 37 384 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 37 384 184 - . alignment_id 1 ; Query Lalb_14616 ; Align 385 44 348 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 617 Query range: 0 -> 293 Target range: 1103 -> 162 1 : MetIleGluArgGluLeuAspSerSerSerAspTyrSerLeuGlnValAsnArgTrpTyrLe : 21 :!:! !|||! !.!.:!! !:!!||||||||||||||||||||| !||||||||| :! ValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMe 1103 : GTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGAT : 1043 22 : uLysSerIleGlyAlaTrpProSerSerSerPheAlaProArgPheGluArgIleValSerV : 42 !|||||||||||||||||||||..!|||||| !!!.!.!!|||||||||:!!||| tLysSerIleGlyAlaTrpProGlnSerSer------SerAsnLeuGluArgIleIleSerA 1042 : GAAAAGCATAGGCGCATGGCCACAGTCCTCG------TCGAATCTCGAGAGAATCATCTCTC : 986 43 : alValLeuIleIleIleCysTyrCysSerMetLeuPheThrGlyIleProCysIleLeuHis : 62 !:!!|||! !:!:||||||||| !:!!:!:||||||||| !||||||||| |||||| rgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIleProCysSerLeuHis 985 : GAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATCCCTTGTTCGCTGCAC : 926 63 : IleLeuLeuGluAspGluAspLeuArgLysLysLeuArgAlaThrGlyProLeuIleAsnMe : 83 :!!:!!|||||| ! ||| !!!! !! !|||:!!!:! ! !|||||||||! !:!! ValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGlyProLeuSerHisTr 925 : GTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTG : 863 84 : tPheMetGlySerIleLysTyrSerThrLeuLeuPheArgGlyAsnGluIleArgAspCysV : 104 ! ! .!. !!! !|||!..|||!!!! !||||||.!.||| !!!!. |||||| !!! ! pValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPheP 862 : GGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTT : 800 105 : alGluHisIleGlnValAspTrpGlnIleValSerArgValArgHisArgLeuValMetThr : 124 !!.!.|||!!::!!..!||||||::!! ..!! ||| ... ::: :::||| ! heAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLysLysGluIleMetLeu 799 : TCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaagaaagaaataatgcTG : 740 125 : SerTyrAlaLysPheGlyArgTyrValSerValPheCysAlaAlaPheThrGlnLeuGlyVa : 145 !.!||||||||||||.!!||||||!.!:!!:!!! !|||.!! !|||! !!!. !|||:! LysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIl 739 : AAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTAT : 677 146 : lAlaSerTyrCysPheValAsnAlaLeuSerThrArgSerValGlnIleGlyAsnGluThrA : 166 ! !.!!|||||| !!:!!!..|||!!!!!!|||! ! !||| !:!!||||||||||||! eLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValValGlyAsnGluThrM 676 : ACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTGGAAACGAGACTA : 614 167 : rgIleValHisValLeuProLeuGluPheTyrLysLysLeuLeuAsnIleAspGluSerPro : 186 !|||:!!!.!|||||||||||| !.!.|||||| !|||||| :!!||| !!:! !! etIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThr 613 : TGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACT : 554 187 : ThrTyrGluIleValPheValSerGlnPheIleSerThrSerIleValAsnPheSerSerVa : 207 ! ! !!|||||||||.!!:!!|||||||||:!!||| !! !|||!.!||| !|||:!!:! MetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAsnThrSerAlaIl 553 : ATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAACACCAGTGCGAT : 491 208 : lGlyAlaPheSerLeuAlaValThrLeuAlaAlaHisAlaCysGlyGlnLeuAsnIleLeuM : 228 !.!!!.!.!.||||||.!! !.!!|||.!!:!!||||||! !|||||||||..!:!::!!| eSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuGlyValValM 490 : CAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGGGCGTGGTTA : 428 229 : etSerArgIleIleGluThrValAsnGlyGluArgAspArgAspAlaLysIleLeuLeuAsn : 248 ||! ! !||| !!!: !|||!:!! !! !||| !|||! ! ! !! !!!!:!! etLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLysAspAspHisPheAsp 427 : TGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAGGACGATCATTTCGAC : 368 249 : GluThrGlyValValValGluAsnHisLeuArgIleLeu{Se} >>>> Target Intro : 262 |||! ! !..!:!!||||||!!.|||||||||:!:|||{!:} 68 bp GluIleProThrIleValGluLysHisLeuArgValLeu{As}++ 367 : GAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG{AA}gt................. : 322 263 : n 1 >>>> {r}PheIleSerGlnIleGluGluValMetAsnLysIleCysPheThrGluM : 279 {!}|||||||||!::||||||! !:!!!!:|||||| |||||| !|||: ++{n}PheIleSerArgIleGluAlaMetIleAsnLysAlaCysPheLeuGluL 321 : ........ag{C}TTCATATCGCGCATAGAGGCAATGATAAACAAAGCGTGTTTCCTGGAGT : 207 280 : etPheHisThrSerLeuCysThrCysMetLeuGlyTyrTyrIle : 293 !: ... !!!!:!!..!! !|||:!:||||||||||||||| euThrArgCysThrIleAlaIleCysValLeuGlyTyrTyrIle 206 : TAACGAGGTGCACGATAGCTATATGCGTACTTGGATATTATATA : 163 vulgar: Lalb_14617 0 293 . LHQN01028641.1 1103 162 - 617 M 31 93 G 2 0 M 228 684 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 163 1103 617 - . gene_id 1 ; sequence Lalb_14617 ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1103 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1103 . - . insertions 0 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 163 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 163 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 163 1103 617 - . alignment_id 1 ; Query Lalb_14617 ; Align 1104 1 93 ; Align 1011 34 684 ; Align 256 263 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14616 [mRNA] [translate_table: standard] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 222 Query range: 43 -> 268 Target range: 1013 -> 323 44 : GlySerArgLeuGluArgValLeuSerIleProLeuMetLeuIleCysPheSerSerLeuPh : 64 ..!|||!.!|||||||||:!!:!!||| ! !|||! :!!||||||!:!!!!:!!:!!.! SerSerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLe 1013 : TCGTCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACT : 953 65 : ePheIleIleLeuProSerValTyrAsnMetLeuPheMetGluGluAspLeuGlnAsnIleV : 85 .|||! |||:!!|||!!! ! :!!:!::!!.!. :!!||| !!!! ! !..! !| uPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysV 952 : ATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAG : 890 86 : alLysLeuLeuGlyProIleSerPheCysMetPheSerThrIleLysTyrCysLeuLeuGly : 105 |||||:!!|||||||||:!:||| !!! :!!|||!!!! !|||!..||| !:!!||| ! alLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeu 889 : TGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTG : 830 106 : MetLysGlyAsnThrLeuGlyGlnCysIleLeuHisLeuGluArgAspTrpLysMetValGl : 126 :!!::! !!!!.|||:!! !!!!.! !.!! !|||:!!|||! !||||||!:!! !..!.. LeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMe 829 : CTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAt : 767 127 : nAspProAspHisArgAlaIleMetLeuLysGlnAlaSerThrSerArgPheLeuIleThrI : 147 . ::: ::: |||||||||||| ! |||!.! !||||||!:! ! ! ! tArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleS 766 : gagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTT : 704 148 : leCysValGlyPheLeuTyrSerGlyGlyMetSerTyrHisThrValMetGlnPheLeuSer : 167 !|||..! !|||:!!:!!.!!||| !:!:.!!||| !..!:!!! !||| !!!! erCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThr 703 : CTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACG : 644 168 : LysAspArgThr<-><->AsnThrAsnValThrLeuArgProIleThrTyrProCysPhe<- : 186 ! !! ! !..! ||| !!.!:!!! !|||||| !:!: !!! ||| !:! MetValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLy 643 : ATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAA : 581 187 : >AsnPheLeuAspThrGlnSerSerProThrTyrGluLeuValPhePheThrHisCysValT : 206 ....!!||| ..!.!.!!!!:! !!! ! !!|||:!!|||.!!!!.:!!!!.! !:!!: sGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuS 580 : AGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCT : 518 207 : hrAlaMetValMetGlnThrIleThrThrAlaGlyTyrSerLeuAlaAlaThrPheValThr : 226 !!!.!.!.:!! !.!.|||! !.!!! !::!! ! ||||||.!!::!.!!.!...!:!! erGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSer 517 : CCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCA : 458 227 : HisMetCysGlyGlnIleGlnIleGlnIleSerArgLeuAspAsnLeuIleGlyGlu<-><- : 246 ||| !! !||||||:!: :!: !!:! ! !:!!!!::!!!!!:!:.!!!!: HisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaAr 457 : CACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAG : 395 247 : >HisArgGluLysAsnThrPheGlnGluArgIleAlaValIleValArgAspHisAlaGluV : 266 !.!|||! !|||:!! ! ! !!:..!||| !!..!||||||..! ! ||| !..!| gArgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgV 394 : ACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAG : 332 267 : alLeuArg : 268 |||||!:! alLeuLys 331 : TGTTGAAG : 324 vulgar: Lalb_14616 43 268 . LHQN01028641.1 1013 323 - 222 M 128 384 G 0 6 M 14 42 G 0 3 M 60 180 G 0 6 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 324 1013 222 - . gene_id 1 ; sequence Lalb_14616 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 324 1013 . - . LHQN01028641.1 exonerate:protein2genome:local exon 324 1013 . - . insertions 15 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 324 1013 222 - . alignment_id 1 ; Query Lalb_14616 ; Align 1014 44 384 ; Align 624 172 42 ; Align 579 186 180 ; Align 393 246 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 297 Query range: 281 -> 385 Target range: 7969 -> 7508 282 : LeuSerGluLeuAspIleCysLeuGluPheTyrGlnGlyLeuGlyPheLeuValValGlnLe : 302 :!!||| !:!!:!! !|||:!!|||||||||:!! !! !|||||||||||||||||||| ValSerThrMetAsnProCysValGluPheTyrLysTyrCysGlyPheLeuValValGlnLe 7969 : GTATCCACGATGAACCCTTGCGTGGAGTTCTACAAGTATTGCGGTTTCTTGGTGGTGCAACT : 7909 303 : uMetHisLeuPhePheLeuThrLeuHisGlyGluPheValIleGluSerAsnAspLysAlaT : 323 |:!:||||||.!!||||||:!!:!!!!.|||.!.|||||||||! |||:!!|||! !.!!| uValHisLeuLeuPheLeuSerIleGlnGlyHisPheValIleValSerHisAspThrThrT 7908 : GGTACATTTGCTTTTCCTTTCTATCCAGGGACACTTCGTTATAGTCTCGCATGACACGACTT : 7846 324 : yrAsnGln{Il} >>>> Target Intron 1 >>>> {e}TyrGluGlyLeuTrpTyr : 332 ||:!!.!.{||} 70 bp {|}|||...!.! !|||||| yrAspAsn{Il}++ ++{e}TyrSerAlaThrTrpTyr 7845 : ACGATAAT{AT}gt.........................ag{A}TACAGCGCTACATGGTAC : 7749 333 : AsnAlaAlaProLysAlaGlnAlaLeuTyrValLeuAlaLeuArgAlaSerAlaAlaAlaPr : 353 |||!.!.!!||||||!.!||||||||||||||||||||||||||| !!:! !.!! !!|| AsnGlyThrProLysValGlnAlaLeuTyrValLeuAlaLeuArgArgAsnLeuThrProPr 7748 : AACGGTACACCGAAAGTGCAAGCTTTATACGTGCTAGCTTTGAGAAGGAACTTGACTCCACC : 7686 354 : oGlnIleThrAlaGlyGlyGlnIleProMetAsnLeuGluThrPheAlaVal >>>> Tar : 371 |! !|||||||||||||||! !||| !!:!!||||||||||||||||||! ! oLeuIleThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGlu++ 7685 : GCTGATTACTGCCGGAGGACTGATCTCCTTGAATTTGGAGACTTTCGCGGAGgt........ : 7630 372 : get Intron 2 >>>> IleIleLysAlaSerValSerTyrPheThrMetLeuLysSerT : 385 79 bp |||:!!|||!.!|||||||||:::||||||:!::!!||||||| ++IleLeuLysGlySerValSerPhePheThrValMetLysSerT 7629 : .................agATATTAAAAGGGtccgtttcctttttcacgGTCATGAAATCGA : 7511 386 : hr : 385 || hr 7510 : CA : 7509 vulgar: gi|383857245|ref|XP_003704115.1| 281 385 . LHQN01028732.1 7969 7508 - 297 M 44 132 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 44 132 5 0 2 I 0 75 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 7509 7969 297 - . gene_id 1 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 7836 7969 . - . LHQN01028732.1 exonerate:protein2genome:local exon 7836 7969 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 7834 7835 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 7766 7835 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 7766 7767 . - . intron_id 0 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 7633 7765 . - . LHQN01028732.1 exonerate:protein2genome:local exon 7633 7765 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 7631 7632 . - . intron_id 2 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 7554 7632 . - . intron_id 2 LHQN01028732.1 exonerate:protein2genome:local splice3 7554 7555 . - . intron_id 1 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 7509 7553 . - . LHQN01028732.1 exonerate:protein2genome:local exon 7509 7553 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 7509 7969 297 - . alignment_id 1 ; Query gi|383857245|ref|XP_003704115.1| ; Align 7970 282 132 ; Align 7765 327 132 ; Align 7554 371 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 257 Query range: 116 -> 212 Target range: 5708 -> 5420 117 : AlaPheIleValLeuIleTyrAlaValAsnValPheGlyCysThrLeuLeuPheIleAsnMe : 137 :!!||| ! !! !.!! ! !|||:!!:!!! !|||.!! !||||||!!: !:! SerPheCysPheThrPheGluLysValHisIleSerLeuCysAlaAlaLeuPheMetCysLe 5708 : TCATTCTGTTTCACGTTTGAAAAAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTT : 5648 138 : tProTrpLeuProArgIleAlaAspIleLeuMetProLeuAsnThrSerArgAspArgLeuP : 158 !|||!:::!! !!! !||| !||||||||||||||||||||| !!!!|||! ||||||| uProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuP 5647 : GCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGT : 5585 159 : heIleIleProAlaCysTyrPheValAspGluAsnLysTyrTyrTyrTrpIleIleAlaHis : 178 ||:!! !||||||! !|||||||||||||||:!!|||||| !|||! !|||:!!!.!||| heValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuIleValGlyHis 5584 : TCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCAT : 5525 179 : MetThrIleIleIleIleThrAlaGlySerValTyrIleAlaCysAspThrCysPheIleTy : 199 ||| !:!!:!!:!::!!! ! ! !||||||!:! !|||||||||.!! !!:!:!:|| MetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTy 5524 : ATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTA : 5462 200 : rIleValGlnHisAlaCysGlyLeuLeuGlyValAlaGly : 212 | !||||||||||||||||||||||||!.!:!!|||||| rAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5461 : CGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5421 vulgar: gi|383857245|ref|XP_003704115.1| 116 212 . LHQN01028732.1 5708 5420 - 257 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5708 257 - . gene_id 2 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5708 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5708 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5708 257 - . alignment_id 2 ; Query gi|383857245|ref|XP_003704115.1| ; Align 5709 117 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 167 Query range: 326 -> 384 Target range: 1492 -> 1233 327 : TyrGluGlyLeuTrpTyrAsnAlaAlaProLysAlaGlnAlaLeuTyrValLeuAlaLeuAr : 347 ||||||..!! !||||||||| !.!!|||!:!.!!|||||||||||||||||||||||||| TyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTyrValLeuAlaLeuAr 1492 : TACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTATGTATTGGCATTGAG : 1432 348 : gAlaSerAlaAlaAlaProGlnIleThrAlaGlyGlyGlnIleProMetAsnLeuGluThrP : 368 |::!!!! ! ! !!|||! !:!!||||||||||||..!! !!:!!||||||..!:!!| gSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrLeuAsnLeuArgSerP 1431 : AAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGTTGAATCTACGATCGT : 1369 369 : heAlaVal >>>> Target Intron 1 >>>> IleIleLysAlaSerValSerTyrP : 379 |||||! ! 85 bp ||||||||||||||||||||||||! heAlaGlu++ ++IleIleLysAlaSerValSerTyrT 1368 : TCGCAGAGgt.........................agATCATCAAAGCATCTGTTTCCTACT : 1251 380 : heThrMetLeuLysSer : 384 :!|||:!!:!!:!!!!! yrThrValMetGlnThr 1250 : ACACGGTGATGCAGACC : 1234 vulgar: gi|383857245|ref|XP_003704115.1| 326 384 . LHQN01028732.1 1492 1233 - 167 M 44 132 5 0 2 I 0 81 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1234 1492 167 - . gene_id 3 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 1361 1492 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1361 1492 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 1359 1360 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 1276 1360 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 1276 1277 . - . intron_id 0 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 1234 1275 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1234 1275 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1234 1492 167 - . alignment_id 3 ; Query gi|383857245|ref|XP_003704115.1| ; Align 1493 327 132 ; Align 1276 371 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|383857245|ref|XP_003704115.1| PREDICTED: uncharacterized protein LOC100880718 [Megachile rotundata] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 134 Query range: 326 -> 371 Target range: 4475 -> 4340 327 : TyrGluGlyLeuTrpTyrAsnAlaAlaProLysAlaGlnAlaLeuTyrValLeuAlaLeuAr : 347 ||||||..! !|||||||||:!!:!! !|||.!!||||||||||||:!!||||||||||| TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeuAr 4475 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTACG : 4415 348 : gAlaSerAlaAlaAlaProGlnIleThrAlaGlyGlyGlnIleProMetAsnLeuGluThrP : 368 |::!||| ! ! !!||| !:!!|||||||||||| ||| !!:!!||||||:!!|||| gSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLysThrP 4414 : GAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAGACCT : 4352 369 : heAlaValIle : 371 ||:!!! !:!! heSerGluVal 4351 : TCTCAGAGGTA : 4341 vulgar: gi|383857245|ref|XP_003704115.1| 326 371 . LHQN01028732.1 4475 4340 - 134 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 4341 4475 134 - . gene_id 4 ; sequence gi|383857245|ref|XP_003704115.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 4341 4475 . - . LHQN01028732.1 exonerate:protein2genome:local exon 4341 4475 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 4341 4475 134 - . alignment_id 4 ; Query gi|383857245|ref|XP_003704115.1| ; Align 4476 327 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754729|ref|XP_012138996.1| PREDICTED: uncharacterized protein LOC100875216 [Megachile rotundata] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 132 -> 253 Target range: 5693 -> 5333 133 : PheTyrArgValThrLeuIleLeuAlaAlaLeuValPheIleTyrIleProLeuIleAsnPr : 153 ||| ! !:!||| !:!! |||..!||| !:!!|||!!:! !:!:|||!!!:!::::|| PheGluLysValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerPr 5693 : TTTGAAAAAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCC : 5633 154 : oThrLeuAspLeuIleMetProIleAsnGlyThrArgProLysGlnGlnLeuPheGlyAlaC : 174 |! !||||||:!!:!!||||||:!:|||! !|||||| !!::! ! :!!!:! !||| oIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAla- 5632 : GATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCT- : 5570 175 : ysTyrValPheValGluAlaAspAspHisPheAlaAlaValPheLeuHisLeuGlyTrpThr : 194 ||| !||||||!!:! !||| ! :!! ! ! !:!! ! !|||:!! ! ..! --TyrTyrPheValAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuVal 5569 : --TACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTA : 5513 195 : ThrPheValThrValTyrAsnValSerIleValAspSerLeuTyrIleLeuIleIleHisHi : 215 ..! ! :!! !:!!! ! ! !!!!! ! !|||:!! !|||:!:! ! !:!:!!.|| ValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHi 5512 : GTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACA : 5450 216 : sValCysGlyLeuPheAspValCysGlyTyrGlnIleGluThrAlaThrGlnAspProGluM : 236 |!.!|||||||||!!.! !:!!...|||!! !:!!:!! ! ! !..!!!: !! . sAlaCysGlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGluAsnGlyP 5449 : CGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAATGGTT : 5387 237 : etArgTyrAspGlnPheLysGlnCysValMetThrHisHisLysAlaLeuLeu : 253 !.! !||| .!.||| ! ! !:!:.!!.!.:!!!!...!|||||| heLeuTyrArgAsnPheValGlyPheCysLeuAlaGluAsnAsnCysLeuLeu 5386 : TTCTTTATAGAAATTTCGTTGGCTTTTGTTTAGCTGAAAACAATTGTCTTTTG : 5334 vulgar: gi|805754729|ref|XP_012138996.1| 132 253 . LHQN01028732.1 5693 5333 - 135 M 41 123 G 1 0 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5334 5693 135 - . gene_id 1 ; sequence gi|805754729|ref|XP_012138996.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5334 5693 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5334 5693 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5334 5693 135 - . alignment_id 1 ; Query gi|805754729|ref|XP_012138996.1| ; Align 5694 133 123 ; Align 5571 175 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805754618|ref|XP_012138745.1| PREDICTED: uncharacterized protein LOC100875437 [Megachile rotundata] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 144 -> 230 Target range: 5663 -> 5408 145 : GlyIlePheLeuMetIleProLeuIleAlaProLeuLeuAspValValLeuProLeuAsnGl : 165 !.!:!!|||:!! :!:|||!!!:!::!!|||:!!||||||:!!:!!:!!||||||||||| AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGl 5663 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGA : 5603 166 : uThrArgProArgGlnGlnLeuPheLysValAsnTyrValValPheAspGluArgAspTyrP : 186 ||||||| !!||| ! :!!!:! !!.! !!||| !!||| |||||| ! ! ||| uThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal---AspGluAspLysTyrA 5602 : GACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC---GACGAGGACAAATATC : 5543 187 : hePheProValTyrPheGlnLeuAlaIleGlyAlaPheIleIleValThrGlyIleIleThr : 206 !!:! !:!! !!.:!! !:!!! !!.! ! !!::!!:!!:!!! !.!! !.!! rgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 5542 : GTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 5483 207 : IleAspSerLeuTyrMetValIleIleHisTyrAsnSerGlyMetPheAlaValCysGlyTy : 227 !|||:!! !|||:!! ! !:!:!!.:!! !!!!|||:!!!!.|||:!!...|||!! CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly** 5482 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTA : 5420 228 : rGlnValGln : 230 !|||||| *LeuValGln 5419 : ATTAGTTCAA : 5409 vulgar: gi|805754618|ref|XP_012138745.1| 144 230 . LHQN01028732.1 5663 5408 - 118 M 35 105 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5409 5663 118 - . gene_id 1 ; sequence gi|805754618|ref|XP_012138745.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5409 5663 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5409 5663 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5409 5663 118 - . alignment_id 1 ; Query gi|805754618|ref|XP_012138745.1| ; Align 5664 145 105 ; Align 5559 181 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|805752313|ref|XP_012144604.1| PREDICTED: uncharacterized protein LOC100878875 isoform X2 [Megachile rotundata] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 95 -> 175 Target range: 5657 -> 5420 96 : PheIleTyrIleProLeuIleAsnProThrLeuAspLeuIleIleProLeuAsnGluThrAr : 116 |||!!:! !:!:|||!!!:!::::|||! !||||||:!!:!!!!:||||||||||||||||| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5657 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5597 117 : gProLysGluGlnLeuPheGlyValCysTyrValPheIleAsnProAspAspTyrPheThrA : 137 | !!::! ! :!!!:! !..!||| !|||:!!:!! !||| ! ||| ! ! gAlaArgLeuPheValTyr---ProAlaTyrTyrPheValAspGluAspLysTyrArgTyrL 5596 : AGCACGGTTGTTCGTCTAT---CCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACT : 5537 138 : laValPheLeuHisMetGlyTrpThrThrTrpValThrValTyrAsnIleIleThrValAsp : 157 !:!! ! !|||||| ! ..!..! :!! !:!!! ! !.!! !.!! !||| euIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAsp 5536 : TGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGAT : 5477 158 : SerLeuTyrIleLeuIleIleHisHisValCysGlyLeuPheAspValCysGly : 175 :!! !|||:!:! ! !:!:!!.|||!.!|||||||||!!.! !:!!...||| AlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5476 : GCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5421 vulgar: gi|805752313|ref|XP_012144604.1| 95 175 . LHQN01028732.1 5657 5420 - 119 M 27 81 G 1 0 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5657 119 - . gene_id 1 ; sequence gi|805752313|ref|XP_012144604.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5657 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5657 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5657 119 - . alignment_id 1 ; Query gi|805752313|ref|XP_012144604.1| ; Align 5658 96 81 ; Align 5577 124 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 317 Query range: 0 -> 159 Target range: 396 -> 867 1 : MetIleGluArgGluLeuAspSerSerSerAspTyrSerLeuGlnValAsnArgTrpTyrLeuL : 22 :!:! !|||! !.!.:!! !:!!||||||||||||||||||||| !||||||||| :!!| ValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetL 397 : GTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGA : 460 23 : ysSerIleGlyAlaTrpProSerSerSerPheAlaProArgPheGluArgIleValSerValVa : 43 |||||||||||.!!|||||| ..!|||:!! !!!.!.!!||||||! !:!!||| !:! ysSerIleGlyThrTrpPro------GlnPheSerSerAsnLeuGluArgAsnIleSerArgIl 461 : AAAGCATAGGCACATGGCCA------CAGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAAT : 517 44 : lLeuIleIleIleCysTyrCysSerMetLeuPheThrGlyIleProCysIleLeuHisIleLeu : 64 !|||! !:!:||||||||| !:!!!!:||||||:!! !||||||||| ||||||:!!:!! eLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMet 518 : ATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATG : 580 65 : LeuGluAspGluAspLeuArgLysLysLeuArgAlaThrGlyProLeuIleAsnMetPheMetG : 86 |||||| ! ! ! !!!! !! !|||:!!!:! ! !||| !!|||! !:!! ! ! .!. LeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheC 581 : CTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCT : 646 87 : lySerIleLysTyrSerThrLeuLeuPheArgGlyAsnGluIleArgAspCysValGluHisIl : 107 !!! !|||!..|||!!!! !||||||.!.||| !!!!. |||!.! !!! !|||.!.|||!! ysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPheValAsnHisMe 647 : GTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTTTGTCAATCATAT : 709 108 : eGlnValAspTrpGlnIleValSerArgValArgHisArgLeuValMetThrSerTyrAlaLys : 128 ::!!..!||||||::!! ..!:::||| ... ::: |||||| !!.!||||||||| tGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLys 710 : GGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAA : 772 129 : PheGlyArgTyrValSerValPheCysAlaAlaPheThrGlnLeuGlyValAlaSerTyrCysP : 150 |||.!!||||||!.!:!!:!!||||||||| !|||! !!!. !|||:!! !.!!|||||| PheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleLeuGlyTyrCysV 773 : TTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACACGGTGGTATACTTGGATATTGTG : 838 151 : heValAsnAlaLeuSerThrArgSerVal : 159 !!:!!!..|||! !!!!|||! ! !||| alMetThrAlaSerThrThrMetValVal 839 : TTATGACAGCGTCCACCACGATGGTTGTC : 867 vulgar: Lalb_14617 0 159 . LHQN01028951.1 396 867 + 317 M 28 84 G 2 0 M 129 387 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 397 867 317 + . gene_id 1 ; sequence Lalb_14617 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 397 867 . + . LHQN01028951.1 exonerate:protein2genome:local exon 397 867 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 397 867 317 + . alignment_id 1 ; Query Lalb_14617 ; Align 397 1 84 ; Align 481 31 387 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 330 -> 376 Target range: 212 -> 74 331 : GluGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrPheLeuProArgArgC : 352 |||:!! !! |||||||||! ! !||||||||||||.!.|||||| ||| !!!:!!:! GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 353 : ysIleLeuAspLeuArgMetIleIleValArgSerSerValMetIleLysIleThrAlaSerLy : 373 ! !|||! !!!! !||||||||| !|||||||||:!!:!!|||||||||||||||.!!|| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 374 : sMetPheHis : 376 |.!. ! :!! sPheValTyr 85 : ATTCGTATAC : 75 vulgar: Lalb_14617 330 376 . LHQN01029187.1 212 74 - 110 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 75 212 110 - . gene_id 1 ; sequence Lalb_14617 ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 75 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 75 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 75 212 110 - . alignment_id 1 ; Query Lalb_14617 ; Align 213 331 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14617 [mRNA] [translate_table: standard] Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 334 -> 388 Target range: 121 -> 289 335 : LysValGlyGluValValTyrMetThrAsnTrpTyrPheLeuProArgArgCysIleLeuAspL : 356 |||||||||! ! !||||||||||||.!.|||||| ||| !!!:!!:! ! !|||! !| LysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGlyL 122 : AAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGGTT : 185 357 : euArgMetIleIleValArgSerSerValMetIleLysIleThrAlaSerLysMetPheHis<- : 377 || !||||||||| !|||||||||:!!:!!|||||||||||||||.!!|||.!. ! :!! euValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheValTyr** 186 : TGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTATACTG : 248 378 : ><->MetSerValTyrThrPheGlyGlnValSerMetSer : 388 !|||||| |||||||||.!.||||||:::::: *ThrSerSerValAlaThrPheGlyAspValSerIleAsn 249 : AACATCGTCTGTCGCAACATTTGGCGATGTGagtattaat : 289 vulgar: Lalb_14617 334 388 . LHQN01048470.1 121 289 + 115 M 42 126 G 0 6 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 122 289 115 + . gene_id 1 ; sequence Lalb_14617 ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 122 289 . + . LHQN01048470.1 exonerate:protein2genome:local exon 122 289 . + . insertions 6 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 122 289 115 + . alignment_id 1 ; Query Lalb_14617 ; Align 122 335 126 ; Align 254 377 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14638 [mRNA] [translate_table: standard] Target: KQ414583.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold34, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 289 -> 357 Target range: 620416 -> 620688 290 : LeuCysLeuGluIlePheIleTyrCysPheAlaGlyGluTyrLeuAsnValLys >> : 308 :!! ! !:!!|||||||||||||||!:: !|||.!. ! ||| !!:!! ! MetThrTyrGlnIlePheIleTyrCysTrpHisGlyAsnGluLeuTyrLeuHis++ 620417 : ATGACATATCAAATCTTTATATATTGCTGGCACGGGAACGAACTGTATCTTCATgt.. : 620473 309 : >> Target Intron 1 >>>> AsnGlnMetIleIleAspAlaAlaTyrGlnMet : 318 68 bp !:!..!! ||| ! !|||||||||..!! ++SerMetAsnIleCysPheAlaAlaTyrMetAsn 620474 : .......................agAGCATGAATATATGTTTTGCCGCTTATATGAAT : 620569 319 : ThrTrpTyrAspLeuGlnProAspIleSerArgGlnIleValPheIleMetLeuLysS : 338 !.!|||!:: !! ! !|||.!!!.!||| :!::!! !!:!!|||! !|||: AsnTrpTrpHisAsnThrLysAspPheLysArgAlaLeuLeuValValMetSerLysA 620570 : AATTGGTGGCATAATACCAAGGATTTTAAACGAGCCTTGCTCGTTGTAATGTCAAAAG : 620629 339 : erGlnLysGlyLeuProLeuThrPheGlyLysPheSerThrLeuSerLeuGluSerPh : 357 !!|||::! !:!! !|||||| !!|||!!..!!! ! !||||||||||||!:!|| laGlnArgProIleIleLeuThrValGlyAsnIleMetGluLeuSerLeuGluAsnPh 620630 : CTCAACGACCTATTATTTTAACTGTTGGAAATATTATGGAATTATCTTTAGAGAATTT : 620686 358 : e : 357 | e 620687 : C : 620688 vulgar: Lalb_14638 289 357 . KQ414583.1 620416 620688 + 104 M 18 54 5 0 2 I 0 64 3 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414583.1 exonerate:protein2genome:local gene 620417 620688 104 + . gene_id 1 ; sequence Lalb_14638 ; gene_orientation + KQ414583.1 exonerate:protein2genome:local cds 620417 620470 . + . KQ414583.1 exonerate:protein2genome:local exon 620417 620470 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local splice5 620471 620472 . + . intron_id 1 ; splice_site "GT" KQ414583.1 exonerate:protein2genome:local intron 620471 620538 . + . intron_id 1 KQ414583.1 exonerate:protein2genome:local splice3 620537 620538 . + . intron_id 0 ; splice_site "AG" KQ414583.1 exonerate:protein2genome:local cds 620539 620688 . + . KQ414583.1 exonerate:protein2genome:local exon 620539 620688 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local similarity 620417 620688 104 + . alignment_id 1 ; Query Lalb_14638 ; Align 620417 290 54 ; Align 620539 308 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 292 -> 376 Target range: 1306802 -> 1306547 293 : LeuLeuThrTyrPheThrLeuLeuValSerPheThrPheAsnIleMetIlePheCy : 311 :!!|||! !||| ! :!!! !||| !|||.!! !!!..!.:!!:!!:!!!::|| IleLeuLysTyrValSerTyrLeuSerSerIleTrpLeuGlnLeuLeuLeuTrpCy 1306802 : ATTCTGAAATACGTATCTTATTTGTCCTCGATTTGGTTGCAACTTTTGTTATGGTG : 1306748 312 : sTyrValGlyGluLeuLeuSerGluGlnCysSerArgMetGlyProAlaSerTyr< : 330 |! !||||||:!!||| !:!!:!! !!! !..!!!:|||! !!.! !||| sLeuProGlyGluIleLeuValGlnGluSerLeuGluIleGlyHisValValTyrL 1306747 : TTTGCCCGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGACACGTAGTCTACT : 1306691 331 : ->AspIleGlnTrpTyrAsnLeuProProArgArgAlaTyrAsnLeuIleLeuLeu : 347 :!!:!!! !||||||||||||||||||! ! ! ! !!.||| !:!!:!! euAsnValProTrpTyrAsnLeuProProIleTyrGlnArgLysLeuCysMetMet 1306690 : TAAATGTACCATGGTACAATTTGCCGCCAATTTACCAGAGAAAACTTTGCATGATG : 1306637 348 : SerAlaIleSerLeuGluProProLysLeuThrAlaGlyAsnIleIleAspLeuSe : 366 ! ! !! :!!! !:!! ! !!..:!!|||||| !!...!! ! ||||| IleLeuArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPheArgThrLeuSe 1306636 : ATCCTTAGGGCACAACAATATTGCAGCATCACGGCATTAACGTTTCGAACGTTGTC : 1306580 367 : rIleAsnThrPheGlyAlaValSerAspPhe : 376 ||||:!!|||!!. !::!|||||||||||| rIleHisThrLeuThrSerValSerAspPhe 1306579 : TATTCACACGTTAACGAGCGTGAGTGatttt : 1306548 vulgar: Lalb_14625 292 376 . KQ414608.1 1306802 1306547 - 109 M 37 111 G 0 3 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1306548 1306802 109 - . gene_id 1 ; sequence Lalb_14625 ; gene_orientation . KQ414608.1 exonerate:protein2genome:local cds 1306548 1306802 . - . KQ414608.1 exonerate:protein2genome:local exon 1306548 1306802 . - . insertions 3 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1306548 1306802 109 - . alignment_id 1 ; Query Lalb_14625 ; Align 1306803 293 111 ; Align 1306689 330 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14620 [mRNA] [translate_table: standard] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 276 -> 392 Target range: 1306895 -> 1306553 277 : PheSerGluIleIlePheMetGluIleMetAlaSerThrPheLeuIleCysLeuVa : 295 |||::: |||:!!|||:!::!!:!!:!:.!!||| !.!.:!!||||||||| PheThrProIleValPheValGlnLeuLeuThrSerGlyIleValIleCysLeuSe 1306895 : tttactccCATCGTTTTCGTACAACTTCTTACAAGCGGAATAGTAATTTGTTTAAG : 1306841 296 : lGluTyrCysLeuLeuThrGluTrpIleAspSerAsnAlaIleAlaIleThrThrT : 314 !! !!:!...:!!!!! ! :!!..! ! !! !! !||| !! !| rGlyPheAlaValPheAsp---------AsnAspAlaArgThrAspIleLeuLysT 1306840 : TGGATTCGCGGTTTTCGAT---------AACGACGCCCGTACCGATATTCTGAAAT : 1306793 315 : yrAlaValTyrMetIleSerLeuThrPheAsnAlaMetIlePheCysTyrIleGly : 332 ||!.! !|||:!! !|||:!! !!!..!. !:!!:!!!::|||! !||| yrValSerTyrLeuSerSerIleTrpLeuGlnLeuLeuLeuTrpCysLeuProGly 1306792 : ACGTATCTTATTTGTCCTCGATTTGGTTGCAACTTTTGTTATGGTGTTTGCCCGGT : 1306739 333 : GlnIleLeuThrAspGlnCysSerGlnIleGlyPheAlaSerTyr<->GlnValAs : 350 :!!||||||..!.!.:!! !!! !:!!|||||| !!.! !||| .!.||| GluIleLeuValGlnGluSerLeuGluIleGlyHisValValTyrLeuAsnValPr 1306738 : GAAATTCTCGTTCAAGAGAGTTTAGAAATAGGACACGTAGTCTACTTAAATGTACC : 1306682 351 : nTrpTyrAsnLeuProProThrGlnAlaArgAsnPheValLeuLeuGlyThrIleS : 369 ||||||||||||||||||! ! ! !|||!!..!! !:!!:!! ! !! : oTrpTyrAsnLeuProProIleTyrGlnArgLysLeuCysMetMetIleLeuArgA 1306681 : ATGGTACAATTTGCCGCCAATTTACCAGAGAAAACTTTGCATGATGATCCTTAGGG : 1306625 370 : erLeuTyrProProLysLeuSerGlyGlyLysValThrGluLeuSerLeuAsnThr : 387 !!! ! ! ! !!..:!!!!!!.! !! ! !! ! !||||||:!!:!!||| laGlnGlnTyrCysSerIleThrAlaLeuThrPheArgThrLeuSerIleHisThr 1306624 : CACAACAATATTGCAGCATCACGGCATTAACGTTTCGAACGTTGTCTATTCACACG : 1306571 388 : PheThrSerValAsn : 392 !!.|||||||||!:! LeuThrSerValSer 1306570 : TTAACGAGCGTGAGT : 1306554 vulgar: Lalb_14620 276 392 . KQ414608.1 1306895 1306553 - 104 M 25 75 G 3 0 M 43 129 G 0 3 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1306554 1306895 104 - . gene_id 1 ; sequence Lalb_14620 ; gene_orientation . KQ414608.1 exonerate:protein2genome:local cds 1306554 1306895 . - . KQ414608.1 exonerate:protein2genome:local exon 1306554 1306895 . - . insertions 3 ; deletions 3 KQ414608.1 exonerate:protein2genome:local similarity 1306554 1306895 104 - . alignment_id 1 ; Query Lalb_14620 ; Align 1306896 277 75 ; Align 1306821 305 129 ; Align 1306689 348 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 114 -> 247 Target range: 203828 -> 204227 115 : IleGluTyrValGlnHisAspTrpArgGluValGluGlnArgGluAspArgGluValM : 134 :!!.!. :!! !.!.|||||| !:!!:!!:!! ! ! !!:|||!!:|||| ValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspPheGluArgAspValM 203829 : GTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATTTCGAAAGAGACGTGA : 203886 135 : etLeuLysTyrGlyAsnValGlyArgAsnLeuThrLeuLeuCysValValPheMetSe : 153 ||:!!:!! !...:!! !||| !!:!:!!||| !! !!.!!!.!!:! etIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSerTyrAlaLeuIlePh 203887 : TGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAGTTATGCGTTAATATT : 203943 154 : rSerGlyGlyPheMetTyrHisThrIleAlaGlnTyrAlaIleGlySerHisValAsn : 172 !!!!!.!! !.!..!. ..!:!! !!::! !!.!||| !!!!... ! eThrAlaValMetPheMetIleValLeuProArgThrGlyIleThrThrArgTyrVal 203944 : TACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATTACCACTAGATACGTA : 204000 173 : GluGlnAsnArgThrIleLysProLeuValTyrProThrTyrSerArgLeuPheAspP : 192 !.!..!.! !!.!|||||| !||| !! ! ! ::::::||| ThrAsnGluThrAsnIleLysLysLeuPheProValProThrTyrTyrIleTyrAspI 204001 : ACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttattatatttacgata : 204060 193 : roGlnProArgProPheTyrGluLeuValTyrValIleHisSerLeuAsnGlyTyrIl : 211 ... !! !|||!:!!:!|||:!!:!!!:!:!!:!!!!.! ! !!.! ! :! leSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAlaThrLeuValLe 204061 : taTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTT : 204117 212 : eLeuSerAlaIleThrMetGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisIle : 230 !:!!:!! ! ! !!!:|||!.! !..!!!! !!.!:!!!!. ! !|||||| uMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeuIleLeuHisIle 204118 : AATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATATT : 204174 231 : CysGlyGlnIleAspIleMetIleLeuArgLeuGlnAsnLeuThrGlnLeu : 247 |||||||||:!:!!:! !:!: ! !|||||| !|||:!!! !!!.||| CysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysHisLeu 204175 : TGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAACATTTG : 204227 vulgar: Lalb_14622 114 247 . KQ414617.1 203828 204227 + 110 M 133 399 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203829 204227 110 + . gene_id 1 ; sequence Lalb_14622 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203829 204227 . + . KQ414617.1 exonerate:protein2genome:local exon 203829 204227 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203829 204227 110 + . alignment_id 1 ; Query Lalb_14622 ; Align 203829 115 399 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 334 -> 381 Target range: 204793 -> 204934 335 : AlaValTyrGluIleAspTrpTyrAsnLeuProTyrLysLysAlaHisAspLeuIleL : 354 |||!.!|||||| !!!:|||! |||||| !! !!.|||||| ! ..!||||||| AlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsnLysAlaLysSerLeuIleL 204794 : GCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAACAAGGCGAAAAGTTTGATTT : 204851 355 : euLeuSerValValSerAsnHisProProLysLeuThrAlaGlyLysMetPheThrLe : 373 ||:!!! !!.! !:!!.!....|||! ! |||||||||||||||:::||| :: euIleMetAlaArgAlaGlnArgProLeuCysLeuThrAlaGlyLysLeuPheProMe 204852 : TAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGcaggaaaattatttcctat : 204908 374 : uSerLeuAsnThrPheSerSerVal : 381 !!!!:!! ||||||!!!!:!||| tThrMetLeuThrPheCysAsnVal 204909 : GACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: Lalb_14621 334 381 . KQ414617.1 204793 204934 + 102 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204794 204934 102 + . gene_id 1 ; sequence Lalb_14621 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204794 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204794 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204794 204934 102 + . alignment_id 1 ; Query Lalb_14621 ; Align 204794 335 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 99 -> 258 Target range: 203828 -> 204296 100 : IleGluPheIleGlnHisAspTrpArgGluValGluHisSerGluAspArgGluLeuM : 119 :!!.!..!.||| !.!.|||||| !:!!:!!:!! ..! !!:|||!!::!!| ValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspPheGluArgAspValM 203829 : GTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATTTCGAAAGAGACGTGA : 203886 120 : etLeuLysTyrGlyAsnValGlyArgAsnLeuThrIleLeuCysLeuValPheMetTy : 138 ||:!!:!! !...:!! !||| !!:!|||||| !!! !!.!!!.!!:!: etIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSerTyrAlaLeuIlePh 203887 : TGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAGTTATGCGTTAATATT : 203943 139 : rSerGlyGlyPheMetTyrHisThrIleMetGlnTyrAlaIleGlyThrPheValAsp : 157 !!!!!.!! !.!..!. ..!:!! ::! !!.!||| !||| !! eThrAlaValMetPheMetIleValLeuProArgThrGlyIleThrThrArgTyrVal 203944 : TACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATTACCACTAGATACGTA : 204000 158 : GluHisAsnArgThrIleLysProLeuValTyrProThrTyrSerGlyLeuPheAspS : 177 !:!!.!.! !!.!|||||| !||| !! ! ! ::::::||| ThrAsnGluThrAsnIleLysLysLeuPheProValProThrTyrTyrIleTyrAspI 204001 : ACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttattatatttacgata : 204060 178 : erGlnAlaSerProPheTyrGluLeuValTyrAlaValHisSerValThrGlyTyrVa : 196 ...! !!!!|||!:!!:!|||:!!:!!!:! !:!!!!.! !!.!||| ! :! leSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAlaThrLeuValLe 204061 : taTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTT : 204117 197 : lIleTyrSerIleThrValGlyAlaCysGlyLeuAlaAlaMetPheAlaThrHisIle : 215 !!!: ! ! !:!!|||!.! !..!!!! !!.!!!:!!. ! !|||||| uMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeuIleLeuHisIle 204118 : AATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATATT : 204174 216 : CysGlyGlnIleAspIleMetIleLeuArgLeuGlnAsnLeuAlaGlnLeuGluGluA : 235 |||||||||:!:!!:! !:!: ! !|||||| !|||:!! !!!.|||||| CysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysHisLeuGluThrP 204175 : TGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAACATTTGGAAACTT : 204234 236 : snThrAspLeuHisProArgLeuValArgIleValGlnHisHisIleArgMetLeuAr : 254 ! ! !:!! ||||||! !! |||:!! !!|||:!:|||:!::!!|| heAspArgIle---------LeuValThrThrValGluAspHisValArgLeuIleAr 204235 : TTGATCGTATT---------TTAGTGACCACGGTAGAAGATCATGTGCGACTTATTAG : 204282 255 : gPheSerThrVal : 258 ||||!:!..!:!! gPheAsnValIle 204283 : GTTTAACGTTATC : 204296 vulgar: Lalb_14619 99 258 . KQ414617.1 203828 204296 + 130 M 139 417 G 3 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203829 204296 130 + . gene_id 1 ; sequence Lalb_14619 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203829 204296 . + . KQ414617.1 exonerate:protein2genome:local exon 203829 204296 . + . insertions 0 ; deletions 3 KQ414617.1 exonerate:protein2genome:local similarity 203829 204296 130 + . alignment_id 1 ; Query Lalb_14619 ; Align 203829 100 417 ; Align 204246 242 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 325 -> 381 Target range: 3178737 -> 3178905 326 : AsnGluAsnCysSerLysIleGlyProAlaValTyrGluIleAspTrpTyrAsnLe : 344 :!!....!. !!..!|||:!!||| !|||:!!||||||!!:|||||| || HisSerGlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLe 3178738 : CATTCCCAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACT : 3178792 345 : uProTyrLysLysAlaHisAspLeuIleLeuLeuSerValValSerAsnHisProP : 363 |||| ! ! ! ! ! ! ||||||:!:|||:!!! !!.! !|||!!.!..||| uProThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProV 3178793 : TCCCACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTG : 3178849 364 : roLysLeuThrAlaGlyLysMetPheThrLeuSerLeuAsnThrPheSerSerVal : 381 !|||:!!|||::!||| ! :!: !!..!|||||| !.!.:!!|||! !|||||| alLysMetThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerVal 3178850 : TTAAAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTT : 3178903 vulgar: Lalb_14621 325 381 . KQ414646.1 3178737 3178905 + 111 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178738 3178905 111 + . gene_id 1 ; sequence Lalb_14621 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178738 3178905 . + . KQ414646.1 exonerate:protein2genome:local exon 3178738 3178905 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178738 3178905 111 + . alignment_id 1 ; Query Lalb_14621 ; Align 3178738 326 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 292 -> 351 Target range: 3178740 -> 3178917 293 : GluLysThrGlyAsnValGlySerLeuCysPheMetIleAspTrpTyrLysPhePr : 311 ...:!!!:!! !!!.||||||..! ! !!:! !!!:|||||| !.!!|| SerGlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuPr 3178741 : TCCCAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCC : 3178795 312 : oValGluThrMetArgSerLeuIleLeuIleIleAlaIleSerAsnAsnProAlaL : 330 |..!!!:! !! !!:!..!|||:!:||||||!!:|||! !|||!!....|||!.!| oThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValL 3178796 : CACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTA : 3178852 331 : ysIleThrAlaGlyHisIleValAspLeuAsnLeuAlaThrPheGlyGlyIleLeu : 348 ||!!:|||::!||||||:!!|||! !|||::! !! !:!!||| !..!:!! ! ysMetThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerValSer 3178853 : AAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTTAGT : 3178906 349 : LysThrSer : 351 !:!! !||| ArgIleSer 3178907 : AGAATTTCC : 3178917 vulgar: Lalb_14622 292 351 . KQ414646.1 3178740 3178917 + 103 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178741 3178917 103 + . gene_id 1 ; sequence Lalb_14622 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178741 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178741 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178741 3178917 103 + . alignment_id 1 ; Query Lalb_14622 ; Align 3178741 293 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14640 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 492 Query range: 2 -> 197 Target range: 1405086 -> 1406100 3 : SerThrValSerGlnProValLysTyrGlyLeuTyrPheValGlyIleTrpProGl : 21 !:!|||:!!|||||| !!||||||:!!|||||| !!:!!.!!.! !|||||||| AsnThrIleSerGlnThrValLysHisGlyLeuArgTyrAlaAlaSerTrpProGl 1405087 : AATACGATAAGTCAAACTGTAAAACATGGCCTCCGTTATGCTGCCTCTTGGCCAGG : 1405141 22 : yThrProPheProGlyLeuHisLysPhePheTrpValLeuSerThrThrLeuCysG : 40 |||||||! ||||||||||||||||||..!:!! !! ! ! ! !| yThrProSerLeuIleLeuHisLysPhePheTrpThrIleValMetCysGlyLeuG 1405142 : AACACCATCGTtgattttacataaatttttttggaCAATTGTCATGTGTGGACTTC : 1405198 41 : lnIleTyrGlnTyrLysTyrValIleAlaHisPheAsnThrAspGlyLeuAlaAsp : 58 |||||||||||||| ||||||||| !|||!:!!!. !:!! !|||!.!||| lnIleTyrGlnTyrGlyTyrValIleArgHisTyrLysTyrAsnThrLeuValAsp 1405199 : AAATTTATCAGTACGGCTACGTGATCAGGCATTATAAATATAACACTCTTGTGGAT : 1405252 59 : MetValAsnCysLeuCysPheAlaLeuProTyrThrMetThrMetValLysLeuIl : 77 ! |||:!! !||| !!.!!..!:!!|||!:!|||:!:..! :!!||||||.! ThrValAspAsnLeuSerIleCysMetProPheThrLeuValCysIleLysLeuPh 1405253 : ACAGTAGATAATTTGAGCATTTGCATGCCATTCACTTTAGTGTGCATCAAATTATT : 1405309 78 : eIleValTrpThrTyrHis{Ar} >>>> Target Intron 1 >>>> {g}V : 85 !:!!!.!||||||:!!!.!{ !} 429 bp {!}: eValAlaTrpThrHisArg{Gl}++ ++{y}L 1405310 : TGTTGCTTGGACACATCGC{GG}gt.........................ag{t}C : 1405762 86 : alLeuCysAspIleLeuSerThrMetGluGluAspCysValLysTyrAlaValVal : 103 !!|||! !||||||:!!||||||||||||||||||||| !||||||||||||::: euLeuTyrAspIleIleSerThrMetGluGluAspCysLysLysTyrAlaValLeu 1405763 : TACTTTACGACATTATCTCGACCATGGAAGAAGACTGTAAAAAGTACGCTGTTCtt : 1405816 104 : AspAlaAsnAsnLeuIleSerLysThrAlaAspLeuSerTyrArgLeuThrSerTh : 122 |||......||||||||||||||||||||| !!||||||!:!|||||||||!:!! AspThrLysAsnLeuIleSerLysThrAlaHisLeuSerPheArgLeuThrAsnIl 1405817 : gatacaaaaaatttaatatcaaaaaCAGCACATCTATCTTTTCGATTAACCAATAT : 1405873 123 : rLeuGlyPhePheTyrLeuAlaAlaValSerCysHisSerAlaThrIleLeuAlaI : 141 !:!! !! !.!!! !:!!:!!:!!..!:!!|||:!!:!! ! !:!!|||||| eValIleCysIleCysValSerSerThrAlaCysTyrAlaIleGlyValLeuAlaP 1405874 : AGTGATATGTATCTGTGTATCATCCACGGCATGTTATGCAATTGGAGTTTTGGCGC : 1405930 142 : leProArgSerAsnAsnThrMetAspGluLysLeuValMetAlaMetAspLeuPro : 159 !! !|||!!!|||! ||| !..!:!!|||:!!!!: !|||||||||||| roGlnArgThrAsnIleThrAlaProArgGluLeuLeuIleLysMetAspLeuPro 1405931 : CACAAAGGACTAATATAACAGCACCTCGAGAACTTTTGATAAAAATGGACTTGCCA : 1405984 160 : PheAspIleSerGluSerProThrTyrGluIleValIleAlaAlaGlnValIleHi : 178 |||:!!! !:!.!.||||||! !||||||:!:||||||!.! !||| !:!! PheAsnThrAsnAsnSerProIleTyrGluLeuValIleValLeuGlnTyrLeuCy 1405985 : TTTAATACGAACAATTCGCCTATTTACGAGCTGGTAATAGTTTTACAATACCTATG : 1406041 179 : sLeuThrSerThrAlaTyrThrPheGlyLeuPheSerAlaLeuLeuLeuMetMetI : 197 ! !..!|||||||||!:!|||||||||:!!||||||::!|||||||||||||||: sLysValSerThrAlaPheThrPheGlyValPheSerSerLeuLeuLeuMetMetV 1406042 : CAAAGTATCGACAGCTTTTACGTTTGGTGTATTCAGCAGTCTGCTTTTGATGATGG : 1406098 198 : le : 197 !! al 1406099 : TA : 1406100 vulgar: Lalb_14640 2 197 . KQ414716.1 1405086 1406100 + 492 M 81 243 S 0 2 5 0 2 I 0 425 3 0 2 S 1 1 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1405087 1406100 492 + . gene_id 1 ; sequence Lalb_14640 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1405087 1405331 . + . KQ414716.1 exonerate:protein2genome:local exon 1405087 1405331 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1405332 1405333 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1405332 1405760 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1405759 1405760 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1405761 1406100 . + . KQ414716.1 exonerate:protein2genome:local exon 1405761 1406100 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1405087 1406100 492 + . alignment_id 1 ; Query Lalb_14640 ; Align 1405087 3 243 ; Align 1405762 85 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14640 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 438 Query range: 196 -> 358 Target range: 1408216 -> 1409208 197 : IleLeuHisValGlyCysValValAspIleLeuCysAspValLeuAlaHisValSe : 215 :!:||||||:!!|||||| !:!!||||||:!!|||.!...!||| !.!.||| ! ValLeuHisLeuGlyCysGlnIleAspIleMetCysGlnThrLeuLysGluValPr 1408217 : GTGCTTCATCTAGGTTGTCAAATCGATATTATGTGCCAGACATTAAAGGAGGTTCC : 1408271 216 : rAlaGluGlyThrGlyGlnLeuArgPheValAlaAlaGluHisGlnGlnValIleL : 234 ! !:!!..!! ! !|||||||||||| !! !::!..!|||||||||:!!|||: oTyrLysAsnLysThrGlnLeuArgPhePheIleSerArgHisGlnGlnIleIleI 1408272 : TTATAAGAATAAAACTCAACTGAGATTCTTCATCAGCAGACATCAACAGATCATCA : 1408328 235 : euPheThrGluLysIleGluGlnLeuPheThrTyrIleSerPheCysGlnLeuLeu : 252 !!|||.!!|||!:!||||||:!!||||||||||||:!!:!!.!! !!||||||||| lePheAlaGluArgIleGluLysLeuPheThrTyrLeuAlaLeuSerGlnLeuLeu 1408329 : TATTTGCAGAGAGAATAGAAAAACTGTTTACGTATCTAGCACTTAGTCAACTTCTC : 1408382 253 : SerAsnThrLeuValThrCysCysLeuGlyPheLeuAlaIleSer >>>> Targ : 268 ||||||||||||:!!|||||||||:!!|||!:!:!! ! !! ! SerAsnThrLeuIleThrCysCysValGlyTyrIleIleAlaPhe++ 1408383 : TCGAATACCCTAATTACTTGCTGCGTGGGTTATATTATCGCATTTgt......... : 1408432 269 : et Intron 1 >>>> AlaLeuGluThrGluAsnAlaLeuProLeuLeuPheLy : 280 92 bp ||||||:!!!.!.!.|||!.!!!! !:!!|||.!!|| ++AlaLeuGlnAsnAsnAsnGlyPheLysMetLeuIleLy 1408433 : ................agGCACTACAAAATAATAATGGATTTAAAATGTTGATCAA : 1408558 281 : sPhePheSerAlaTyrAlaAlaIleCysValGluIlePheIleTyrCysPheAlaG : 299 |||| !! ! !||| !|||:!:||| !||| ||||||||||||||||||| sPheValValTyrTyrMetAlaValCysSerGluAlaPheIleTyrCysPheAlaG 1408559 : ATTTGTTGTATATTACATGGCTGTGTGCTCAGAAGCGTTCATATACTGCTTTGCTG : 1408615 300 : lyGluTyrLeuAsnIleLys >>>> Target Intron 2 >>>> SerGlnM : 308 |||||||||||||||||||| 414 bp |||:::: lyGluTyrLeuAsnIleLys++ ++SerLysL 1408616 : GAGAGTACCTTAATATCAAGgt.........................agagtaaac : 1409056 309 : etIleValAspAlaAlaTyrGlnIleAlaTrpTyrGluLeuGlnProAsnIleSer : 326 ::||| |||.!!||||||:!!.!! !||||||.!.:!!!!. !!!!. !||| euIleGlyAspThrAlaTyrGluPheLeuTrpTyrAsnMetHisSerLysGluSer 1409057 : tgattggagACACGGCGTATGAATTTCTTTGGTATAATATGCATTCGAAGGAAAGC : 1409110 327 : ArgGlnLeuValLeuLeuIleLeuLysCysGlnArgGlyLeuProLeuThrPheGl : 345 |||! :!!:!!|||:!!||||||::!! |||!:!|||!!! ! ...|||||||| ArgLeuMetLeuLeuValIleLeuArgSerGlnLysGlyPheThrPheThrPheGl 1409111 : CGACTTATGTTGCTTGTAATACTACGATCACAGAAAGGATTTACtttcacttttgg : 1409167 346 : yLysPheSerThrLeuSerLeuAspSerPheThrSerIle : 358 |||||||::::::||||||:!!!!:||||||.!!.!!:!! yLysPheAlaSerLeuSerMetGluSerPheAlaGlyVal 1409168 : aaaatttgcaagtCTTTCCATGGAAAGTTTTGCAGGCGTA : 1409208 vulgar: Lalb_14640 196 358 . KQ414716.1 1408216 1409208 + 438 M 71 213 5 0 2 I 0 88 3 0 2 M 38 114 5 0 2 I 0 410 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408217 1409208 438 + . gene_id 2 ; sequence Lalb_14640 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408217 1408429 . + . KQ414716.1 exonerate:protein2genome:local exon 1408217 1408429 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408430 1408431 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408430 1408521 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1408520 1408521 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1408522 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408522 1408635 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408636 1408637 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408636 1409049 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1409048 1409049 . + . intron_id 1 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409050 1409208 . + . KQ414716.1 exonerate:protein2genome:local exon 1409050 1409208 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408217 1409208 438 + . alignment_id 2 ; Query Lalb_14640 ; Align 1408217 197 213 ; Align 1408522 268 114 ; Align 1409050 306 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14640 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 418 Query range: 196 -> 361 Target range: 1401021 -> 1402603 197 : IleLeuHisValGlyCysValValAspIleLeuCysAspValLeuAlaHisValSe : 215 :!!||||||:!!|||||| !:!!||||||:!!||| !||| ! !!||||| ValLeuHisLeuGlyCysGlnIleAspIleMetCysArgAsnLeuLeuAspValSe 1401022 : GTACTTCATCTAGGATGTCAAATCGACATCATGTGCCGAAATTTGCTAGACGTTTC : 1401076 216 : rAlaGluGlyThrGlyGlnLeuArgPheValAlaAlaGluHisGlnGlnValIleL : 234 | !:!!! ! |||::::::||| !..!||||||:!!:!!|||: rPheLysAspGlyLysGlnIleLysPhePheIleAsnArgHisGlnGluIleIleV 1401077 : CTTCAAAGACggaaaacaaataaaattcttcattaACAGACATCAGGAAATTATTG : 1401133 235 : euPheThrGluLysIleGluGlnLeuPheThrTyrIleSerPheCysGlnLeuLeu : 252 !!|||.!!|||!:!||||||:!!||||||||||||!!::!!.!! !!||||||:!! alPheAlaGluArgIleGluLysLeuPheThrTyrMetAlaLeuSerGlnLeuVal 1401134 : TTTTTGCAGAAAGAATTGAGAAACTTTTTACATACATGGCTCTCAGTCAACTTGTG : 1401187 253 : SerAsnThrLeuValThrCysCysLeuGlyPheLeuAlaIleSer >>>> Targ : 268 |||||||||:!!:!!! !||||||:!!|||||||||!.!:!!! ! SerAsnThrIleIleIleCysCysValGlyPheLeuValValIle++ 1401188 : TCCAATACGATAATTATATGTTGCGTAGGATTTCTCGTTGTAATTgt......... : 1401237 269 : et Intron 1 >>>> AlaLeuGluThrGluAsnAlaLeuProLeuLeuPheLy : 280 83 bp |||:!!.!.! !!!:|||!.!:!!|||||||||.!!|| ++AlaValHisIleAspAsnGlyValProLeuLeuLeuLy 1401238 : ................aggCAGTACATATCGACAATGGAGTTCCTCTGTTACTCAa : 1401354 281 : sPhePheSerAlaTyrAlaAlaIleCysValGluIlePheIleTyrCysPheAlaG : 299 | ... |||...!.!||||||:!!||| |||||||||||||||!.!| sSerLeuLeuPheTyrValValIleCysLeuGluAlaPheIleTyrCysPheValG 1401355 : atctcttttattttatgtgGTTATTTGTTTAGAAGCGTTTATATACTGCTTTGTCG : 1401411 300 : lyGluTyrLeuAsnIleLys >>>> Target Intron 2 >>>> SerGlnM : 308 |||||||||||!:!|||||| 1004 bp ||||||: lyGluTyrLeuSerIleLys++ ++SerGlnL 1401412 : GAGAATATCTCAGTATCAAGgt.........................agAGCCAAC : 1402442 309 : etIleValAspAlaAlaTyrGlnIleAlaTrpTyrGluLeuGlnProAsnIleSer : 326 !:|||! !:!!.!!||||||:!!.!! !||||||!!:|||!:: !!!.! !||| euIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSer 1402443 : TAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAGC : 1402496 327 : ArgGlnLeuValLeuLeuIleLeuLysCysGlnArgGlyLeuProLeuThrPheGl : 345 !:!! |||:!!! !:!!||||||!:!! !|||!:!|||!!! !!!..|||||||| GlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGl 1402497 : CAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACGTttacttttgg : 1402553 346 : yLysPheSerThrLeuSerLeuAspSerPheThrSerIleLeuHisMet : 361 ||||||||||:::|||||||||!!:|||||||||:!!:!! :::::: yLysPheSerSerLeuSerLeuGluSerPheThrAlaValSerTyrLeu 1402554 : aaaattttcaagtctCTCCTTGGAAAGCTTTACGGCCGTAAGctactta : 1402603 vulgar: Lalb_14640 196 361 . KQ414716.1 1401021 1402603 + 418 M 71 213 5 0 2 I 0 79 3 0 2 M 38 114 5 0 2 I 0 1000 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401022 1402603 418 + . gene_id 3 ; sequence Lalb_14640 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401022 1401234 . + . KQ414716.1 exonerate:protein2genome:local exon 1401022 1401234 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401235 1401236 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401235 1401317 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1401316 1401317 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1401318 1401431 . + . KQ414716.1 exonerate:protein2genome:local exon 1401318 1401431 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401432 1401433 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401432 1402435 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1402434 1402435 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402436 1402603 . + . KQ414716.1 exonerate:protein2genome:local exon 1402436 1402603 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401022 1402603 418 + . alignment_id 3 ; Query Lalb_14640 ; Align 1401022 197 213 ; Align 1401318 268 114 ; Align 1402436 306 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14640 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 284 Query range: 357 -> 467 Target range: 1401021 -> 1401431 358 : IleLeuHisMetGlyCysHisIleAspIleLeuCysHisValIleThrLysIleTh : 376 :!!||||||:!:||||||!!.|||||||||:!!|||!.. !:!: ! ! :!! ValLeuHisLeuGlyCysGlnIleAspIleMetCysArgAsnLeuLeuAspVal-- 1401022 : GTACTTCATCTAGGATGTCAAATCGACATCATGTGCCGAAATTTGCTAGACGTT-- : 1401076 377 : rSerSerLysAspLysLysTyrPheArgPheValAlaValArgHisGlnGluLeuI : 395 |||! !|||||| ||| ...:::||| !||||||||||||:!!| -SerPheLysAspGlyLysGlnIleLysPhePheIleAsnArgHisGlnGluIleI 1401077 : -TCCTTCAAAGACggaaaacaaataaaattcttcattaACAGACATCAGGAAATTA : 1401130 396 : leLeuPheSerGluArgIleGluGlnLeuPheThrPheIleSerLeuAlaGlnLeu : 413 ||:!!|||:!!||||||||||||:!!|||||||||!:!!!::!!|||::!|||||| leValPheAlaGluArgIleGluLysLeuPheThrTyrMetAlaLeuSerGlnLeu 1401131 : TTGTTTTTGCAGAAAGAATTGAGAAACTTTTTACATACATGGCTCTCAGTCAACTT : 1401184 414 : MetSerAsnThrIleValSerCysCysLeuGlyTyrLeuValIleIle >>>> T : 430 :!!||||||||||||:!!! !||||||:!!|||!:!||||||:!!||| ValSerAsnThrIleIleIleCysCysValGlyPheLeuValValIle++ 1401185 : GTGTCCAATACGATAATTATATGTTGCGTAGGATTTCTCGTTGTAATTgt...... : 1401237 431 : arget Intron 1 >>>> GlyLeuGlnGlnGlySerAspLeuProGluLeuLe : 441 83 bp ..!:!!!!. ! !!:!! :!!||| !||||| ++AlaValHisIleAspAsnGlyValProLeuLeuLe 1401238 : ...................aggCAGTACATATCGACAATGGAGTTCCTCTGTTACT : 1401351 442 : uLysPheGlyValCysTyrValAlaIleCysIleGluIlePheIleCysCysPheA : 460 |||| ::: ||||||!.!||||||:!!||| ||||||! !||||||! uLysSerLeuLeuPheTyrValValIleCysLeuGluAlaPheIleTyrCysPheV 1401352 : CAaatctcttttattttatgtgGTTATTTGTTTAGAAGCGTTTATATACTGCTTTG : 1401408 461 : laGlyGluTyrLeuAsnValLys : 467 .!||||||||||||!:!:!!||| alGlyGluTyrLeuSerIleLys 1401409 : TCGGAGAATATCTCAGTATCAAG : 1401431 vulgar: Lalb_14640 357 467 . KQ414716.1 1401021 1401431 + 284 M 18 54 G 1 0 M 53 159 5 0 2 I 0 79 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401022 1401431 284 + . gene_id 4 ; sequence Lalb_14640 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401022 1401234 . + . KQ414716.1 exonerate:protein2genome:local exon 1401022 1401234 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local splice5 1401235 1401236 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401235 1401317 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1401316 1401317 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1401318 1401431 . + . KQ414716.1 exonerate:protein2genome:local exon 1401318 1401431 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401022 1401431 284 + . alignment_id 4 ; Query Lalb_14640 ; Align 1401022 358 54 ; Align 1401076 377 159 ; Align 1401318 430 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14640 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 279 Query range: 78 -> 197 Target range: 1398601 -> 1398958 79 : ValTrpThrTyrHisArgValLeuCysAspIleLeuSerThrMetGluGluAspCy : 97 :!! !! !!:!|||!!!|||!!! !!||||||||||||||||||||||||||||| IleThrIlePheHisSerValPheSerAspIleLeuSerThrMetGluGluAspCy 1398602 : ATAACGATATTTCACAGCGTATTTAGTGACATTTTATCAACCATGGAAGAGGATTG : 1398656 98 : sValLysTyrAlaValValAspAlaAsnAsnLeuIleSerLysThrAlaAspLeuS : 116 | !|||||||||!.!:!!||| !|||!!.|||!!:|||||||||!.!.!.|||| sGlnLysTyrAlaAlaIleAspIleAsnLysLeuMetSerLysThrGlyGlnLeuS 1398657 : TCAGAAATATGCTGCTATAGATATAAATAAGTTGATGTCAAAAACCGGACAgctat : 1398713 117 : erTyrArgLeuThrSerThrLeuGlyPhePheTyrLeuAlaAlaValSerCysHis : 134 ||::: |||||||||! !:!! !! !!!.|||:!!|||:!!!.!:!!! !:!! erPheTyrLeuThrSerIleValMetSerLeuTyrMetAlaSerAlaAlaPheTyr 1398714 : ctttttatttaacaagcATTGTTATGTCTTTGTATATGGCATCTGCAGCATTTTAC : 1398767 135 : SerAlaThrIleLeuAlaIleProArgSerAsnAsnThrMetAspGluLysLeuVa : 153 ! !.!!!.!! !:!!!.!.!!! ! !!!:!||| !:!!:!:..!..!:!!|||:! IleThrAsnThrIleGlyPheGlnGlyAsnAsnAlaSerValSerArgGluLeuLe 1398768 : ATAACTAATACTATTGGATTTCAAGGAAATAATGCTTCAGTATCTCGGGAGCTCCT : 1398824 154 : lMetAlaMetAspLeuProPheAspIleSerGluSerProThrTyrGluIleValI : 172 !||| !|||||||||||||||!!:! !||||||||||||!.!||||||:!!|||: uMetLysMetAspLeuProPheGluThrSerGluSerProAsnTyrGluLeuValV 1398825 : TATGAAAATGGATTTGCCTTTCGAGACCAGCGAATCGCCGAATTACGAACTTGTAG : 1398881 173 : leAlaAlaGlnValIleHisLeuThrSerThrAlaTyrThrPheGlyLeuPheSer : 190 !!.!!.!!||||||:!! !! ! !|||..!||| .!!!:!||| !|||!:! alThrThrGlnValLeuIleHisLeuSerValAlaValAlaTyrGlyAlaPheAsn 1398882 : TAACTACACAGGTCCTTATTCACTTATCAGTGGCCGTAGCATACGGTGCATTCAAT : 1398935 191 : AlaLeuLeuLeuMetMetIle : 197 |||||||||||||||:!!:!! AlaLeuLeuLeuMetValVal 1398936 : GCTCTTCTCTTAATGGTGGTA : 1398958 vulgar: Lalb_14640 78 197 . KQ414716.1 1398601 1398958 + 279 M 119 357 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1398602 1398958 279 + . gene_id 5 ; sequence Lalb_14640 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1398602 1398958 . + . KQ414716.1 exonerate:protein2genome:local exon 1398602 1398958 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1398602 1398958 279 + . alignment_id 5 ; Query Lalb_14640 ; Align 1398602 79 357 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14640 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 256 Query range: 357 -> 467 Target range: 1408216 -> 1408635 358 : IleLeuHisMetGlyCysHisIleAspIleLeuCysHisValIleThrLysIleTh : 376 :!:||||||:!:||||||!!.|||||||||:!!|||!!...!:!!! !:!!:!! ValLeuHisLeuGlyCysGlnIleAspIleMetCysGlnThrLeuLysGluVal-- 1408217 : GTGCTTCATCTAGGTTGTCAAATCGATATTATGTGCCAGACATTAAAGGAGGTT-- : 1408271 377 : rSerSerLysAspLysLysTyrPheArgPheValAlaValArgHisGlnGluLeuI : 395 !!! !|||:!!|||! ! .!.|||||| !! ! !|||||||||:!!:!!| -ProTyrLysAsnLysThrGlnLeuArgPhePheIleSerArgHisGlnGlnIleI 1408272 : -CCTTATAAGAATAAAACTCAACTGAGATTCTTCATCAGCAGACATCAACAGATCA : 1408325 396 : leLeuPheSerGluArgIleGluGlnLeuPheThrPheIleSerLeuAlaGlnLeu : 413 ||:!!|||:!!||||||||||||:!!|||||||||!:!:!!:!!|||::!|||||| leIlePheAlaGluArgIleGluLysLeuPheThrTyrLeuAlaLeuSerGlnLeu 1408326 : TCATATTTGCAGAGAGAATAGAAAAACTGTTTACGTATCTAGCACTTAGTCAACTT : 1408379 414 : MetSerAsnThrIleValSerCysCys >>>> Target Intron 1 >>>> : 423 :!:|||||||||:!!:!!!!!|||||| 91 bp LeuSerAsnThrLeuIleThrCysCys++ ++ 1408380 : CTCTCGAATACCCTAATTACTTGCTGCgt.........................ag : 1408498 424 : Leu-GlyTyrLeuValIleIleGlyLeuGlnGlnGlySerAspLeuProGluLeuL : 441 :!!#..! !!|||..!:!! !.!||||||.!...!!:!! !!! ! !|||: Met#SerAsnLeuThrLeuGlnAlaLeuGlnAsnAsnAsnGlyPheLysMetLeuI 1408499 : ATGATCGAATTTAACGTTACAGGCACTACAAAATAATAATGGATTTAAAATGTTGA : 1408555 442 : euLysPheGlyValCysTyrValAlaIleCysIleGluIlePheIleCysCysPhe : 459 !!||||||! !|||! !|||:!!|||:!:||| !||| ||||||! !|||||| leLysPheValValTyrTyrMetAlaValCysSerGluAlaPheIleTyrCysPhe 1408556 : TCAAATTTGTTGTATATTACATGGCTGTGTGCTCAGAAGCGTTCATATACTGCTTT : 1408609 460 : AlaGlyGluTyrLeuAsnValLys : 467 ||||||||||||||||||:!!||| AlaGlyGluTyrLeuAsnIleLys 1408610 : GCTGGAGAGTACCTTAATATCAAG : 1408635 vulgar: Lalb_14640 357 467 . KQ414716.1 1408216 1408635 + 256 M 18 54 G 1 0 M 46 138 5 0 2 I 0 87 3 0 2 M 1 3 F 0 1 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408217 1408635 256 + . gene_id 6 ; sequence Lalb_14640 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408217 1408408 . + . KQ414716.1 exonerate:protein2genome:local exon 1408217 1408408 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local splice5 1408409 1408410 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408409 1408499 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1408498 1408499 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1408500 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408500 1408635 . + . insertions 0 ; deletions 0 ; frameshifts 1 KQ414716.1 exonerate:protein2genome:local similarity 1408217 1408635 256 + . alignment_id 6 ; Query Lalb_14640 ; Align 1408217 358 54 ; Align 1408271 377 138 ; Align 1408500 423 3 ; Align 1408504 424 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14640 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 187 Query range: 1 -> 81 Target range: 1390532 -> 1390772 2 : ArgSerThrValSerGlnProValLysTyrGlyLeuTyrPheValGlyIleTrpPr : 20 !.!!.!!:!:!!|||!::||||||:!! !|||||| !!...!||||||||||| AsnLysSerIleSerArgProValGluIleGlyLeuArgLeuThrGlyIleTrpPr 1390533 : AACAAAAGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGGAATTTGGCC : 1390587 21 : oGlyThrProPheProGlyLeuHisLysPhePheTrpValLeuSerThrThrLeuC : 39 ||||:!! !!!:! ! !:!! !::! ! !|||:!!:!! !! !|||:!! oGlySerSerTyrGluIleIleValArgValThrTrpIleIleLeuMetThrValV 1390588 : AGGTTCATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTATGACAGTTG : 1390644 40 : ysGlnIleTyrGlnTyrLysTyrValIleAlaHisPheAsnThrAspGlyLeuAla : 57 ||||||!:!||||||::!|||:!!||| !|||.!!:!! !..!..!|||||| alGlnIlePheGlnTyrArgTyrIleIleLysHisLeuAspGlySerAsnLeuAla 1390645 : TACAAATATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGTAATCTGGCG : 1390698 58 : AspMetValAsnCysLeuCysPheAlaLeuProTyrThrMetThrMetValLysLe : 76 :!!:!::!!:!! !!:!! !! !.!!|||||||||!:!:!! ! |||||||| AsnLeuIleAspSerValGlyThrThrLeuProTyrSerLeuLeuTyrValLysLe 1390699 : AACTTAATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTATgtcaaatt : 1390755 77 : uIleIleValTrpThr : 81 ||||||| |||||| uIleIlePheTrpThr 1390756 : aattattttctggaCT : 1390772 vulgar: Lalb_14640 1 81 . KQ414716.1 1390532 1390772 + 187 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390533 1390772 187 + . gene_id 7 ; sequence Lalb_14640 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1390533 1390772 . + . KQ414716.1 exonerate:protein2genome:local exon 1390533 1390772 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390533 1390772 187 + . alignment_id 7 ; Query Lalb_14640 ; Align 1390533 2 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14640 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 227 -> 308 Target range: 1394272 -> 1394979 228 : GluHisGlnGlnValIleLeuPheThrGluLysIleGluGlnLeuPheThrTyrIl : 246 ..!|||!!.!:!:!!|||:!! !:!!!!:...||||||...||||||:!!||||| ArgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIl 1394273 : AGACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACAT : 1394327 247 : eSerPheCysGlnLeuLeuSerAsnThrLeuValThrCysCysLeuGlyPheLeu< : 265 |:!!!!. |||! !|||!!!||||||||||||! !||||||:!!||||||||| eAlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGlyPheLeuI 1394328 : TGCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGATTCTTAA : 1394384 266 : ->AlaIle >>>> Target Intron 1 >>>> SerAlaLeuGluThrGluA : 273 !.!||| 464 bp |||!!!.!.|||!::. leValIle++ ++---AlaPheAsnThrAspG 1394385 : TAGTAATTgt.........................ag---GCATTTAATACAGatg : 1394872 274 : snAlaLeuProLeuLeuPheLysPhePheSerAlaTyrAlaAlaIleCysValGlu : 291 .. ::: ......||| ... ! !||| !|||||| !:!!||| lyAsnIleLysThrPheIleLysThrLeuLeuPheTyrIleAlaIleThrMetGlu 1394873 : gaaatataaaaacatttataaaaacattACTCTTTTACATCGCTATCACTATGGAA : 1394926 292 : IlePheIleTyrCysPheAlaGlyGluTyrLeuAsnIleLysSerGlnMet : 308 !||||||!:!! !||||||||||||||||||!:!! !||| !...||| AlaPheIlePheSerPheAlaGlyGluTyrLeuSerAsnLysValSerMet 1394927 : GCATTCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAAGTTAGTATG : 1394979 vulgar: Lalb_14640 227 308 . KQ414716.1 1394272 1394979 + 143 M 37 111 G 0 3 M 2 6 5 0 2 I 0 460 3 0 2 G 1 0 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394273 1394979 143 + . gene_id 8 ; sequence Lalb_14640 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394273 1394392 . + . KQ414716.1 exonerate:protein2genome:local exon 1394273 1394392 . + . insertions 3 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394393 1394394 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394393 1394856 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394855 1394856 . + . intron_id 0 ; splice_site "aG" KQ414716.1 exonerate:protein2genome:local cds 1394857 1394979 . + . KQ414716.1 exonerate:protein2genome:local exon 1394857 1394979 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394273 1394979 143 + . alignment_id 8 ; Query Lalb_14640 ; Align 1394273 228 111 ; Align 1394387 265 6 ; Align 1394857 268 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14640 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 2 -> 84 Target range: 1385631 -> 1385874 3 : SerThrValSerGlnProValLysTyrGlyLeuTyrPheValGlyIleTrpProGl : 21 !!!! !:!!!:!!::|||:!!:!!|||.!!||| !.!. !!||| !||||||! ThrIleIleAsnArgProLeuGluTyrSerLeuArgLeuPheGlyAlaTrpProAs 1385632 : ACTATAATTAATCGTCCATTGGAATATAGCCTCCGTCTATTTGGCGCCTGGCCAGA : 1385686 22 : yThrProPheProGlyLeuHisLysPhePheTrpValLeuSerThrThrLeuCysG : 40 !:!! !!!:! !! !||| ! !...!!.!!||| ! !! !! !.!! pSerSerTyrSerPheLeuLysSerIleIleTrpSerThrIleMetAlaThrPheL 1385687 : TTCTTCCTATTCATTTCTGAAAAGTATTATTTGGTCGACGATAATGGCAAcgtttt : 1385743 41 : lnIleTyrGlnTyrLysTyrValIleAlaHisPheAsnThrAspGlyLeuAlaAsp : 58 ::::::|||||| !||| !|||.!!|||.!!!..:!! |||||| ||| euMetPheGlnTyrTrpTyrCysIleThrHisIleArgSer---GlyLeuIleAsp 1385744 : taatgtttcaataTTGGTATTGTATTACTCATATTAGATCA---ggtttaattgat : 1385794 59 : MetValAsnCysLeuCysPheAlaLeuProTyrThrMetThrMetValLysLeuIl : 77 :::::::!! ! ||| !!.!!.!!||| !! !!:!!:!:..!.!.:!!|||||||| LeuLeuAspGlyLeuSerIleThrLeuSerAsnSerLeuValPheLeuLysLeuIl 1385795 : ttattgGACGGATTGAGTATTACTTTATCAAATTCACTCGTCTTTCTCAAATTGAT : 1385851 78 : eIleValTrpThrTyrHisArg : 84 ||||:!!||| !:!! !||| eIleIleTrpLeuHisSerArg 1385852 : TATTATTTGGCTTCATAGTCGG : 1385874 vulgar: Lalb_14640 2 84 . KQ414716.1 1385631 1385874 + 120 M 51 153 G 1 0 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1385632 1385874 120 + . gene_id 9 ; sequence Lalb_14640 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1385632 1385874 . + . KQ414716.1 exonerate:protein2genome:local exon 1385632 1385874 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local similarity 1385632 1385874 120 + . alignment_id 9 ; Query Lalb_14640 ; Align 1385632 3 153 ; Align 1385785 55 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14640 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 221 -> 267 Target range: 1387203 -> 1387341 222 : LeuArgPheValAlaAlaGluHisGlnGlnValIleLeuPheThrGluLysIleGl : 240 :!!!:! !|||!.!!.!..!||||||!:!:!!|||! !.!.:!!:!!!!.||||| IleLysAspValValValArgHisGlnArgIleIleArgLeuSerLysAsnIleGl 1387204 : ATAAAGGATGTCGTTGTTAGGCATCAACGAATTATACGACTGTCTAAAAATATCGA : 1387258 241 : uGlnLeuPheThrTyrIleSerPheCysGlnLeuLeuSerAsnThrLeuValThrC : 259 | !:!!|||||||||||||||!!.||||||...||||||||| ||||||! !| uThrValPheThrTyrIleSerLeuCysGlnPheLeuSerAsnMetLeuValIleC 1387259 : GACAGTTTTTACTTATATATCATTATgccaatttttatcgaatatgcTGGTTATCT : 1387315 260 : ysCysLeuGlyPheLeuAlaIleSer : 267 ||! !:!!.!!|||:!! !:!!!!! ysPheIleSerPheValLeuValThr 1387316 : GTTTCATAAGCTTCGTTTTGGTAACC : 1387341 vulgar: Lalb_14640 221 267 . KQ414716.1 1387203 1387341 + 114 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387204 1387341 114 + . gene_id 10 ; sequence Lalb_14640 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387204 1387341 . + . KQ414716.1 exonerate:protein2genome:local exon 1387204 1387341 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387204 1387341 114 + . alignment_id 10 ; Query Lalb_14640 ; Align 1387204 222 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14640 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 386 -> 428 Target range: 1387212 -> 1387338 387 : ValAlaValArgHisGlnGluLeuIleLeuPheSerGluArgIleGluGlnLeuPh : 405 |||!.!||||||||||||..!:!!|||! !.!.|||:!!!.!|||||| !:!!|| ValValValArgHisGlnArgIleIleArgLeuSerLysAsnIleGluThrValPh 1387213 : GTCGTTGTTAGGCATCAACGAATTATACGACTGTCTAAAAATATCGAGACAGTTTT : 1387267 406 : eThrPheIleSerLeuAlaGlnLeuMetSerAsnThrIleValSerCysCysLeuG : 424 ||||!:!|||||||||...|||...:::|||||| :!:|||! !|||! !:!!. eThrTyrIleSerLeuCysGlnPheLeuSerAsnMetLeuValIleCysPheIleS 1387268 : TACTTATATATCATTATgccaatttttatcgaatatgcTGGTTATCTGTTTCATAA : 1387324 425 : lyTyrLeuValIle : 428 !!!:!:!!:!!:!! erPheValLeuVal 1387325 : GCTTCGTTTTGGTA : 1387338 vulgar: Lalb_14640 386 428 . KQ414716.1 1387212 1387338 + 107 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387213 1387338 107 + . gene_id 11 ; sequence Lalb_14640 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387213 1387338 . + . KQ414716.1 exonerate:protein2genome:local exon 1387213 1387338 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387213 1387338 107 + . alignment_id 11 ; Query Lalb_14640 ; Align 1387213 387 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14641 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 305 Query range: 207 -> 320 Target range: 1405758 -> 1406097 208 : SerValLeuArgGlnIleLeuSerThrMetGluAspAspCysAlaArgTyrAlaAl : 226 |||:!!||| !.!.|||:!!||||||||||||!!:|||||| !!:!||||||!. SerLeuLeuTyrAspIleIleSerThrMetGluGluAspCysLysLysTyrAlaVa 1405759 : agtCTACTTTACGACATTATCTCGACCATGGAAGAAGACTGTAAAAAGTACGCTGT : 1405813 227 : aLeuAspLysAsnAsnValIleSerLysThrAlaAspLeuSerPheArgIleThrS : 245 !|||||| ...|||:::||||||||||||||| !!||||||||||||:!!|||! lLeuAspThrLysAsnLeuIleSerLysThrAlaHisLeuSerPheArgLeuThrA 1405814 : TCttgatacaaaaaatttaatatcaaaaaCAGCACATCTATCTTTTCGATTAACCA : 1405870 246 : erThrIleProAlaLeuPheMetIleSerValCysCysAsnAlaValGlySerLeu : 263 :!! !:!: !..!:!!! !:!: !|||..!...||| !!|||:!!||| !||| snIleValIleCysIleCysValSerSerThrAlaCysTyrAlaIleGlyValLeu 1405871 : ATATAGTGATATGTATCTGTGTATCATCCACGGCATGTTATGCAATTGGAGTTTTG : 1405924 264 : AlaIleProGlnSerAsnAspSerSerValArgGlnLeuLeuIleAsnMetAspLe : 282 ||| !! !::!!!!||| !!!:!! !|||:!!|||||||||!!.|||||||| AlaProGlnArgThrAsnIleThrAlaProArgGluLeuLeuIleLysMetAspLe 1405925 : GCGCCACAAAGGACTAATATAACAGCACCTCGAGAACTTTTGATAAAAATGGACTT : 1405981 283 : uProPheAspThrAsnGlnSerProThrTyrGluLeuValValAlaAlaGlnIleI : 301 |||||||:!!||||||.!.||||||! !||||||||||||:!!!.! !||| !: uProPheAsnThrAsnAsnSerProIleTyrGluLeuValIleValLeuGlnTyrL 1405982 : GCCATTTAATACGAACAATTCGCCTATTTACGAGCTGGTAATAGTTTTACAATACC : 1406038 302 : leTyrGlnValMetSerAlaTyrThrPheSerIlePheAsnAlaLeuLeuLeuMet : 319 !!! !:!!||| !!!!|||!:!||||||.!!:!!|||!:!::!|||||||||||| euCysLysValSerThrAlaPheThrPheGlyValPheSerSerLeuLeuLeuMet 1406039 : TATGCAAAGTATCGACAGCTTTTACGTTTGGTGTATTCAGCAGTCTGCTTTTGATG : 1406092 320 : Met : 320 ||| Met 1406093 : ATG : 1406097 vulgar: Lalb_14641 207 320 . KQ414716.1 1405758 1406097 + 305 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1405759 1406097 305 + . gene_id 1 ; sequence Lalb_14641 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1405759 1406097 . + . KQ414716.1 exonerate:protein2genome:local exon 1405759 1406097 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1405759 1406097 305 + . alignment_id 1 ; Query Lalb_14641 ; Align 1405759 208 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14641 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 302 Query range: 359 -> 474 Target range: 1405755 -> 1406100 360 : HisGlyValLeuArgGluIleIleSerThrMetGluGluAspCysAlaArgTyrAl : 378 |||...:!!||| !!!:||||||||||||||||||||||||||| !!:!||||| HisSerLeuLeuTyrAspIleIleSerThrMetGluGluAspCysLysLysTyrAl 1405756 : cacagtCTACTTTACGACATTATCTCGACCATGGAAGAAGACTGTAAAAAGTACGC : 1405810 379 : aAlaLeuAspLysAsnAsnValIleSerLysThrAlaAspLeuSerPheArgLeuT : 397 |!.!|||||| ...|||:::||||||||||||||| !!|||||||||||||||| aValLeuAspThrLysAsnLeuIleSerLysThrAlaHisLeuSerPheArgLeuT 1405811 : TGTTCttgatacaaaaaatttaatatcaaaaaCAGCACATCTATCTTTTCGATTAA : 1405867 398 : hrSerThrIleProAlaLeuPheMetValSerValSerCysAsnAlaValGlyAla : 415 ||!:!! !:!: !..!:!!! !:!: !|||..!:!!||| !!|||:!!|||!.! hrAsnIleValIleCysIleCysValSerSerThrAlaCysTyrAlaIleGlyVal 1405868 : CCAATATAGTGATATGTATCTGTGTATCATCCACGGCATGTTATGCAATTGGAGTT : 1405921 416 : LeuAlaIleSerGlnSerAsnAspSerSerAlaArgGlnPheLeuMetAsnMetAs : 434 |||||| !..!::!!!!||| !!!:!! !!|||:!!.!!|||!!:!!.||||| LeuAlaProGlnArgThrAsnIleThrAlaProArgGluLeuLeuIleLysMetAs 1405922 : TTGGCGCCACAAAGGACTAATATAACAGCACCTCGAGAACTTTTGATAAAAATGGA : 1405978 435 : pLeuProPheAspThrAsnGlnSerProThrTyrGluLeuValValAlaAlaGlnI : 453 ||||||||||:!!||||||.!.||||||! !||||||||||||:!!!.! !||| pLeuProPheAsnThrAsnAsnSerProIleTyrGluLeuValIleValLeuGlnT 1405979 : CTTGCCATTTAATACGAACAATTCGCCTATTTACGAGCTGGTAATAGTTTTACAAT : 1406035 454 : leIlePheGlnValMetSerGlyPheThrPheSerMetIleSerSerCysLeuVal : 471 !:!!! !:!!||| !!!!!.!|||||||||.!!:!:.!!|||||| |||:!! yrLeuCysLysValSerThrAlaPheThrPheGlyValPheSerSerLeuLeuLeu 1406036 : ACCTATGCAAAGTATCGACAGCTTTTACGTTTGGTGTATTCAGCAGTCTGCTTTTG : 1406089 472 : MetThrIle : 474 |||! !:!! MetMetVal 1406090 : ATGATGGTA : 1406100 vulgar: Lalb_14641 359 474 . KQ414716.1 1405755 1406100 + 302 M 115 345 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1405756 1406100 302 + . gene_id 2 ; sequence Lalb_14641 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1405756 1406100 . + . KQ414716.1 exonerate:protein2genome:local exon 1405756 1406100 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1405756 1406100 302 + . alignment_id 2 ; Query Lalb_14641 ; Align 1405756 360 345 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14641 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 289 Query range: 2 -> 116 Target range: 1405755 -> 1406097 3 : ArgSerValLeuArgAspIleIleThrSerMetGluGluAspCysValLysTyrSe : 21 ...|||:!!||| !|||||||||:!!!!!||||||||||||||| !||||||:! HisSerLeuLeuTyrAspIleIleSerThrMetGluGluAspCysLysLysTyrAl 1405756 : cacagtCTACTTTACGACATTATCTCGACCATGGAAGAAGACTGTAAAAAGTACGC : 1405810 22 : rValAspAspSerLysAsnLeuIleSerAsnAlaAlaAspLeuSerGlnSerValS : 40 !||| |||:::|||||||||||||||....!!||| !!|||||| !!:!!! aValLeuAspThrLysAsnLeuIleSerLysThrAlaHisLeuSerPheArgLeuT 1405811 : TGTTCttgatacaaaaaatttaatatcaaaaaCAGCACATCTATCTTTTCGATTAA : 1405867 41 : erArgThrValIleIleIleTyrValAlaSerAlaGlyPheTyrAlaValThrThr : 58 !!!.!! !|||||| !|||! !|||:!!|||.!!!.!! !||||||:!! !..! hrAsnIleValIleCysIleCysValSerSerThrAlaCysTyrAlaIleGlyVal 1405868 : CCAATATAGTGATATGTATCTGTGTATCATCCACGGCATGTTATGCAATTGGAGTT : 1405921 59 : LeuAlaAlaProHisSerAsnAspThrIleProArgArgLeuLeuLeuAsnMetAs : 77 |||||| !!! !...!!!||| ||| !||||||..!||||||:!!!!.||||| LeuAlaProGlnArgThrAsnIleThrAlaProArgGluLeuLeuIleLysMetAs 1405922 : TTGGCGCCACAAAGGACTAATATAACAGCACCTCGAGAACTTTTGATAAAAATGGA : 1405978 78 : pLeuProPheAsnThrValGluSerProAsnTyrGluLeuValValMetLeuGlnV : 96 |||||||||||||||| !.!.||||||! !||||||||||||:!!:!:|||||| pLeuProPheAsnThrAsnAsnSerProIleTyrGluLeuValIleValLeuGlnT 1405979 : CTTGCCATTTAATACGAACAATTCGCCTATTTACGAGCTGGTAATAGTTTTACAAT : 1406035 97 : alIleSerIleLeuMetThrSerTyrAlaTyrSerValPheSerAlaLeuLeuLeu : 114 !:!!!!!! !:!! !|||:!!!:!.!!!:!.!!|||||||||::!||||||||| yrLeuCysLysValSerThrAlaPheThrPheGlyValPheSerSerLeuLeuLeu 1406036 : ACCTATGCAAAGTATCGACAGCTTTTACGTTTGGTGTATTCAGCAGTCTGCTTTTG : 1406089 115 : MetMet : 116 |||||| MetMet 1406090 : ATGATG : 1406097 vulgar: Lalb_14641 2 116 . KQ414716.1 1405755 1406097 + 289 M 114 342 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1405756 1406097 289 + . gene_id 3 ; sequence Lalb_14641 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1405756 1406097 . + . KQ414716.1 exonerate:protein2genome:local exon 1405756 1406097 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1405756 1406097 289 + . alignment_id 3 ; Query Lalb_14641 ; Align 1405756 3 342 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14641 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 268 Query range: 207 -> 320 Target range: 1398616 -> 1398955 208 : SerValLeuArgGlnIleLeuSerThrMetGluAspAspCysAlaArgTyrAlaAl : 226 ||||||!!!!!!.!.||||||||||||||||||!!:|||||| !!:!|||||||| SerValPheSerAspIleLeuSerThrMetGluGluAspCysGlnLysTyrAlaAl 1398617 : AGCGTATTTAGTGACATTTTATCAACCATGGAAGAGGATTGTCAGAAATATGCTGC : 1398671 227 : aLeuAspLysAsnAsnValIleSerLysThrAlaAspLeuSerPheArgIleThrS : 245 |:!!|||! !|||!!.:!!!!:|||||||||!.!.!.||||||||| :::|||| aIleAspIleAsnLysLeuMetSerLysThrGlyGlnLeuSerPheTyrLeuThrS 1398672 : TATAGATATAAATAAGTTGATGTCAAAAACCGGACAgctatctttttatttaacaa : 1398728 246 : erThrIleProAlaLeuPheMetIleSerValCysCysAsnAlaValGlySerLeu : 263 ||! !:!! !:!!|||!:!||| !|||!.!...! ! !! !..!..!!!!:!! erIleValMetSerLeuTyrMetAlaSerAlaAlaPheTyrIleThrAsnThrIle 1398729 : gcATTGTTATGTCTTTGTATATGGCATCTGCAGCATTTTACATAACTAATACTATT : 1398782 264 : AlaIleProGlnSerAsnAspSerSerValArgGlnLeuLeuIleAsnMetAspLe : 282 !.!.!!! ! !!:!|||! !||| ! !|||:!!||||||!!:!!.|||||||| GlyPheGlnGlyAsnAsnAlaSerValSerArgGluLeuLeuMetLysMetAspLe 1398783 : GGATTTCAAGGAAATAATGCTTCAGTATCTCGGGAGCTCCTTATGAAAATGGATTT : 1398839 283 : uProPheAspThrAsnGlnSerProThrTyrGluLeuValValAlaAlaGlnIleI : 301 |||||||!!:|||!:!:!!||||||!.!|||||||||||||||.!!.!!|||:!!: uProPheGluThrSerGluSerProAsnTyrGluLeuValValThrThrGlnValL 1398840 : GCCTTTCGAGACCAGCGAATCGCCGAATTACGAACTTGTAGTAACTACACAGGTCC : 1398896 302 : leTyrGlnValMetSerAlaTyrThrPheSerIlePheAsnAlaLeuLeuLeuMet : 319 !! !!!.:!! !||| .!!!:!.!! !||||||||||||||||||||| euIleHisLeuSerValAlaValAlaTyrGlyAlaPheAsnAlaLeuLeuLeuMet 1398897 : TTATTCACTTATCAGTGGCCGTAGCATACGGTGCATTCAATGCTCTTCTCTTAATG : 1398950 320 : Met : 320 :!! Val 1398951 : GTG : 1398955 vulgar: Lalb_14641 207 320 . KQ414716.1 1398616 1398955 + 268 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1398617 1398955 268 + . gene_id 4 ; sequence Lalb_14641 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1398617 1398955 . + . KQ414716.1 exonerate:protein2genome:local exon 1398617 1398955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1398617 1398955 268 + . alignment_id 4 ; Query Lalb_14641 ; Align 1398617 208 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14641 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 261 Query range: 2 -> 116 Target range: 1398613 -> 1398955 3 : ArgSerValLeuArgAspIleIleThrSerMetGluGluAspCysValLysTyrSe : 21 !.!||||||!!!!!!||||||:!!:!!!!!||||||||||||||| !||||||:! HisSerValPheSerAspIleLeuSerThrMetGluGluAspCysGlnLysTyrAl 1398614 : CACAGCGTATTTAGTGACATTTTATCAACCATGGAAGAGGATTGTCAGAAATATGC : 1398668 22 : rValAspAspSerLysAsnLeuIleSerAsnAlaAlaAspLeuSerGlnSerValS : 40 !!.! |||! !!!.!!.|||!!:|||!!..!!!.!.!.|||||| :::: aAlaIleAspIleAsnLysLeuMetSerLysThrGlyGlnLeuSerPheTyrLeuT 1398669 : TGCTATAGATATAAATAAGTTGATGTCAAAAACCGGACAgctatctttttatttaa : 1398725 41 : erArgThrValIleIleIleTyrValAlaSerAlaGlyPheTyrAlaValThrThr : 58 :: ! !|||!!: !:!:|||:!!|||||||||!.!|||||| !..!!.!||| hrSerIleValMetSerLeuTyrMetAlaSerAlaAlaPheTyrIleThrAsnThr 1398726 : caagcATTGTTATGTCTTTGTATATGGCATCTGCAGCATTTTACATAACTAATACT : 1398779 59 : LeuAlaAlaProHisSerAsnAspThrIleProArgArgLeuLeuLeuAsnMetAs : 77 :!!!.! !! ! !:!|||! !:!!:!! !!|||..!||||||:!!!!.||||| IleGlyPheGlnGlyAsnAsnAlaSerValSerArgGluLeuLeuMetLysMetAs 1398780 : ATTGGATTTCAAGGAAATAATGCTTCAGTATCTCGGGAGCTCCTTATGAAAATGGA : 1398836 78 : pLeuProPheAsnThrValGluSerProAsnTyrGluLeuValValMetLeuGlnV : 96 ||||||||||.!.||| !|||||||||||||||||||||||||||! !|||| pLeuProPheGluThrSerGluSerProAsnTyrGluLeuValValThrThrGlnV 1398837 : TTTGCCTTTCGAGACCAGCGAATCGCCGAATTACGAACTTGTAGTAACTACACAGG : 1398893 97 : alIleSerIleLeuMetThrSerTyrAlaTyrSerValPheSerAlaLeuLeuLeu : 114 ||:!!! ! !||| ..!:!! ||||||.!!!.!|||!:!|||||||||||| alLeuIleHisLeuSerValAlaValAlaTyrGlyAlaPheAsnAlaLeuLeuLeu 1398894 : TCCTTATTCACTTATCAGTGGCCGTAGCATACGGTGCATTCAATGCTCTTCTCTTA : 1398947 115 : MetMet : 116 |||:!! MetVal 1398948 : ATGGTG : 1398955 vulgar: Lalb_14641 2 116 . KQ414716.1 1398613 1398955 + 261 M 114 342 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1398614 1398955 261 + . gene_id 5 ; sequence Lalb_14641 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1398614 1398955 . + . KQ414716.1 exonerate:protein2genome:local exon 1398614 1398955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1398614 1398955 261 + . alignment_id 5 ; Query Lalb_14641 ; Align 1398614 3 342 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14641 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 259 Query range: 359 -> 474 Target range: 1398613 -> 1398958 360 : HisGlyValLeuArgGluIleIleSerThrMetGluGluAspCysAlaArgTyrAl : 378 |||.!!|||!!!!!!!!:|||:!!||||||||||||||||||||| !!:!||||| HisSerValPheSerAspIleLeuSerThrMetGluGluAspCysGlnLysTyrAl 1398614 : CACAGCGTATTTAGTGACATTTTATCAACCATGGAAGAGGATTGTCAGAAATATGC : 1398668 379 : aAlaLeuAspLysAsnAsnValIleSerLysThrAlaAspLeuSerPheArgLeuT : 397 ||||:!!|||! !|||!!.:!!!!:|||||||||!.!.!.||||||||| |||| aAlaIleAspIleAsnLysLeuMetSerLysThrGlyGlnLeuSerPheTyrLeuT 1398669 : TGCTATAGATATAAATAAGTTGATGTCAAAAACCGGACAgctatctttttatttaa : 1398725 398 : hrSerThrIleProAlaLeuPheMetValSerValSerCysAsnAlaValGlyAla : 415 |||||! !:!! !:!!|||!:!|||!.!|||!.!:!!! ! !! !..!..!.!! hrSerIleValMetSerLeuTyrMetAlaSerAlaAlaPheTyrIleThrAsnThr 1398726 : caagcATTGTTATGTCTTTGTATATGGCATCTGCAGCATTTTACATAACTAATACT : 1398779 416 : LeuAlaIleSerGlnSerAsnAspSerSerAlaArgGlnPheLeuMetAsnMetAs : 434 :!!!.!.!!..! !!:!|||! !||| !:!!|||:!!.!!||||||!!.||||| IleGlyPheGlnGlyAsnAsnAlaSerValSerArgGluLeuLeuMetLysMetAs 1398780 : ATTGGATTTCAAGGAAATAATGCTTCAGTATCTCGGGAGCTCCTTATGAAAATGGA : 1398836 435 : pLeuProPheAspThrAsnGlnSerProThrTyrGluLeuValValAlaAlaGlnI : 453 ||||||||||!!:|||!:!:!!||||||!.!|||||||||||||||.!!.!!|||: pLeuProPheGluThrSerGluSerProAsnTyrGluLeuValValThrThrGlnV 1398837 : TTTGCCTTTCGAGACCAGCGAATCGCCGAATTACGAACTTGTAGTAACTACACAGG : 1398893 454 : leIlePheGlnValMetSerGlyPheThrPheSerMetIleSerSerCysLeuVal : 471 !!:!!.!!!!.:!! !!.! ! .!!!:!.!! .!!!:!:!! !|||:!! alLeuIleHisLeuSerValAlaValAlaTyrGlyAlaPheAsnAlaLeuLeuLeu 1398894 : TCCTTATTCACTTATCAGTGGCCGTAGCATACGGTGCATTCAATGCTCTTCTCTTA : 1398947 472 : MetThrIle : 474 |||..!:!! MetValVal 1398948 : ATGGTGGTA : 1398958 vulgar: Lalb_14641 359 474 . KQ414716.1 1398613 1398958 + 259 M 115 345 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1398614 1398958 259 + . gene_id 6 ; sequence Lalb_14641 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1398614 1398958 . + . KQ414716.1 exonerate:protein2genome:local exon 1398614 1398958 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1398614 1398958 259 + . alignment_id 6 ; Query Lalb_14641 ; Align 1398614 360 345 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14641 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 240 Query range: 112 -> 208 Target range: 1408509 -> 1409211 113 : LeuLeuMetMetThrIleGlnGluGlyGlyLysPheSerGlnGlnIleLysPheIl : 131 ||| !:!:..!.!!:!!|||.!...!..! !|||!.!..! !|||||||||:! LeuThrLeuGlnAlaLeuGlnAsnAsnAsnGlyPheLysMetLeuIleLysPheVa 1408510 : TTAACGTTACAGGCACTACAAAATAATAATGGATTTAAAATGTTGATCAAATTTGT : 1408564 132 : eValCysTyrLeuAlaIleCysIleGluIlePheThrCysCysPheAlaGlyGluT : 150 !|||! !|||:!!|||:!:||| !||| |||! !! !|||||||||||||||| lValTyrTyrMetAlaValCysSerGluAlaPheIleTyrCysPheAlaGlyGluT 1408565 : TGTATATTACATGGCTGTGTGCTCAGAAGCGTTCATATACTGCTTTGCTGGAGAGT : 1408621 151 : yrLeuAsnMetLys >>>> Target Intron 1 >>>> AsnAspMetIleV : 159 ||||||||!!:||| 414 bp ::: :::||| yrLeuAsnIleLys++ ++SerLysLeuIleG 1408622 : ACCTTAATATCAAGgt.........................agagtaaactgattg : 1409062 160 : alGluAlaAlaTyrGluIleSerTrpTyrAsnMetArgProSerMetSerArgGln : 177 :!:.!!|||||||||.!! !||||||||||||!.! !!!.! ||||||! lyAspThrAlaTyrGluPheLeuTrpTyrAsnMetHisSerLysGluSerArgLeu 1409063 : gagACACGGCGTATGAATTTCTTTGGTATAATATGCATTCGAAGGAAAGCCGACTT : 1409116 178 : ValIleLeuLeuLeuSerArgSerGlnLysGlyLeuCysLeuThrPheGlyLysPh : 196 :!!:!:|||:!!:!! !|||||||||||||||!!! ...|||||||||||||| MetLeuLeuValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysPh 1409117 : ATGTTGCTTGTAATACTACGATCACAGAAAGGATTTACtttcacttttggaaaatt : 1409173 197 : eSerAlaLeuSerLeuGluThrPheThrTrpValSer : 208 |::::::||||||:!!|||!:!|||.!! ! |||||| eAlaSerLeuSerMetGluSerPheAlaGlyValSer 1409174 : tgcaagtCTTTCCATGGAAAGTTTTGCAGGCGTAAGT : 1409211 vulgar: Lalb_14641 112 208 . KQ414716.1 1408509 1409211 + 240 M 42 126 5 0 2 I 0 410 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408510 1409211 240 + . gene_id 7 ; sequence Lalb_14641 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408510 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408510 1408635 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408636 1408637 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408636 1409049 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1409048 1409049 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409050 1409211 . + . KQ414716.1 exonerate:protein2genome:local exon 1409050 1409211 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408510 1409211 240 + . alignment_id 7 ; Query Lalb_14641 ; Align 1408510 113 126 ; Align 1409050 155 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14641 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 221 Query range: 473 -> 545 Target range: 1401021 -> 1401237 474 : IleLeuHisAlaGlyCysValIleAspIleLeuCysTyrIleIleThrHisIleSe : 492 :!!|||||| !|||||| !|||||||||:!!||| ! !:!: ! !!:!!|| ValLeuHisLeuGlyCysGlnIleAspIleMetCysArgAsnLeuLeuAspValSe 1401022 : GTACTTCATCTAGGATGTCAAATCGACATCATGTGCCGAAATTTGCTAGACGTTTC : 1401076 493 : rCysLeuAspGluArgGlnPheArgPheValAlaMetArgHisGlnGluIleIleG : 511 |! ! !||| :::|||...:::||| |||||||||||||||||| rPheLysAspGlyLysGlnIleLysPhePheIleAsnArgHisGlnGluIleIleV 1401077 : CTTCAAAGACggaaaacaaataaaattcttcattaACAGACATCAGGAAATTATTG : 1401133 512 : lnPheThrGlnArgIleGluArgMetPheThrTyrIleAlaLeuGlyGlnLeuLeu : 529 |||.!!:!!|||||||||!:!:!:|||||||||!!:||||||.!!||||||:!! alPheAlaGluArgIleGluLysLeuPheThrTyrMetAlaLeuSerGlnLeuVal 1401134 : TTTTTGCAGAAAGAATTGAGAAACTTTTTACATACATGGCTCTCAGTCAACTTGTG : 1401187 530 : ThrAsnThrLeuIleIleCysCysLeuGlyPheLeuMetIleThrVal : 545 :!!||||||:!!||||||||||||:!!|||||||||:!::!!! !||| SerAsnThrIleIleIleCysCysValGlyPheLeuValValIleVal 1401188 : TCCAATACGATAATTATATGTTGCGTAGGATTTCTCGTTGTAATTGTA : 1401237 vulgar: Lalb_14641 473 545 . KQ414716.1 1401021 1401237 + 221 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401022 1401237 221 + . gene_id 8 ; sequence Lalb_14641 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1401022 1401237 . + . KQ414716.1 exonerate:protein2genome:local exon 1401022 1401237 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401022 1401237 221 + . alignment_id 8 ; Query Lalb_14641 ; Align 1401022 474 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14641 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 206 Query range: 473 -> 545 Target range: 1408216 -> 1408432 474 : IleLeuHisAlaGlyCysValIleAspIleLeuCysTyrIleIleThrHisIleSe : 492 :!:|||||| !|||||| !|||||||||:!!||| ! ! !:!!! !.!.:!! ! ValLeuHisLeuGlyCysGlnIleAspIleMetCysGlnThrLeuLysGluValPr 1408217 : GTGCTTCATCTAGGTTGTCAAATCGATATTATGTGCCAGACATTAAAGGAGGTTCC : 1408271 493 : rCysLeuAspGluArgGlnPheArgPheValAlaMetArgHisGlnGluIleIleG : 511 !! ! !:!!:!!! !|||.!.|||||| !! !! |||||||||:!!|||||| oTyrLysAsnLysThrGlnLeuArgPhePheIleSerArgHisGlnGlnIleIleI 1408272 : TTATAAGAATAAAACTCAACTGAGATTCTTCATCAGCAGACATCAACAGATCATCA : 1408328 512 : lnPheThrGlnArgIleGluArgMetPheThrTyrIleAlaLeuGlyGlnLeuLeu : 529 !|||.!!:!!|||||||||!:!:!!|||||||||:!!||||||.!!||||||||| lePheAlaGluArgIleGluLysLeuPheThrTyrLeuAlaLeuSerGlnLeuLeu 1408329 : TATTTGCAGAGAGAATAGAAAAACTGTTTACGTATCTAGCACTTAGTCAACTTCTC : 1408382 530 : ThrAsnThrLeuIleIleCysCysLeuGlyPheLeuMetIleThrVal : 545 :!!||||||||||||! !||||||:!!|||!:!:!!!!: ! !||| SerAsnThrLeuIleThrCysCysValGlyTyrIleIleAlaPheVal 1408383 : TCGAATACCCTAATTACTTGCTGCGTGGGTTATATTATCGCATTTGTA : 1408432 vulgar: Lalb_14641 473 545 . KQ414716.1 1408216 1408432 + 206 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408217 1408432 206 + . gene_id 9 ; sequence Lalb_14641 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1408217 1408432 . + . KQ414716.1 exonerate:protein2genome:local exon 1408217 1408432 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408217 1408432 206 + . alignment_id 9 ; Query Lalb_14641 ; Align 1408217 474 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14641 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 127 -> 210 Target range: 1401350 -> 1402603 128 : IleLysPheIleValCysTyrLeuAlaIleCysIleGluIlePheThrCysCysPh : 146 :!!||| :::::: |||:::!.!||||||:!!||| |||! !! !||||| LeuLysSerLeuLeuPheTyrValValIleCysLeuGluAlaPheIleTyrCysPh 1401351 : CTCAaatctcttttattttatgtgGTTATTTGTTTAGAAGCGTTTATATACTGCTT : 1401405 147 : eAlaGlyGluTyrLeuAsnMetLys >>>> Target Intron 1 >>>> As : 155 |!.!||||||||||||!:!!!:||| 1004 bp !: eValGlyGluTyrLeuSerIleLys++ ++Se 1401406 : TGTCGGAGAATATCTCAGTATCAAGgt.........................agAG : 1402436 156 : nAspMetIleValGluAlaAlaTyrGluIleSerTrpTyrAsnMetArgProSerM : 174 !.!.:!:|||! !.!..!!|||||||||.!! !||||||:!!:!:||| !!!!! rGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrG 1402437 : CCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTG : 1402493 175 : etSerArgGlnValIleLeuLeuLeuSerArgSerGlnLysGlyLeuCysLeuThr : 192 |||!:!! :!!|||! !:!!:!!! !|||||||||||||||!!! !..||| luSerGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThr 1402494 : AAAGCCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACGTttact : 1402547 193 : PheGlyLysPheSerAlaLeuSerLeuGluThrPheThrTrpValSerValLeu : 210 |||||||||||||||:::||||||||||||!:!|||||| |||||| ||| PheGlyLysPheSerSerLeuSerLeuGluSerPheThrAlaValSerTyrLeu 1402548 : tttggaaaattttcaagtctCTCCTTGGAAAGCTTTACGGCCGTAAGctactta : 1402603 vulgar: Lalb_14641 127 210 . KQ414716.1 1401350 1402603 + 204 M 27 81 5 0 2 I 0 1000 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401351 1402603 204 + . gene_id 10 ; sequence Lalb_14641 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401351 1401431 . + . KQ414716.1 exonerate:protein2genome:local exon 1401351 1401431 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401432 1401433 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401432 1402435 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1402434 1402435 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402436 1402603 . + . KQ414716.1 exonerate:protein2genome:local exon 1402436 1402603 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401351 1402603 204 + . alignment_id 10 ; Query Lalb_14641 ; Align 1401351 128 81 ; Align 1402436 155 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14641 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 501 -> 545 Target range: 1387212 -> 1387344 502 : ValAlaMetArgHisGlnGluIleIleGlnPheThrGlnArgIleGluArgMetPh : 520 |||!.!:!:|||||||||..!||||||!:!.!.:!!:!!!.!||||||! !:!:|| ValValValArgHisGlnArgIleIleArgLeuSerLysAsnIleGluThrValPh 1387213 : GTCGTTGTTAGGCATCAACGAATTATACGACTGTCTAAAAATATCGAGACAGTTTT : 1387267 521 : eThrTyrIleAlaLeuGlyGlnLeuLeuThrAsnThrLeuIleIleCysCysLeuG : 539 ||||||||||:!!||| |||...|||:::||| |||:!!||||||! !:!!. eThrTyrIleSerLeuCysGlnPheLeuSerAsnMetLeuValIleCysPheIleS 1387268 : TACTTATATATCATTATgccaatttttatcgaatatgcTGGTTATCTGTTTCATAA : 1387324 540 : lyPheLeuMetIleThrVal : 545 !!|||:!!:!!:!!|||||| erPheValLeuValThrVal 1387325 : GCTTCGTTTTGGTAACCGta : 1387344 vulgar: Lalb_14641 501 545 . KQ414716.1 1387212 1387344 + 123 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387213 1387344 123 + . gene_id 11 ; sequence Lalb_14641 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387213 1387344 . + . KQ414716.1 exonerate:protein2genome:local exon 1387213 1387344 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387213 1387344 123 + . alignment_id 11 ; Query Lalb_14641 ; Align 1387213 502 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14641 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 504 -> 547 Target range: 1394272 -> 1394401 505 : ArgHisGlnGluIleIleGlnPheThrGlnArgIleGluArgMetPheThrTyrIl : 523 ||||||!!...!|||||| !:!!.!. !||||||!!!:!:|||:!!||||| ArgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIl 1394273 : AGACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACAT : 1394327 524 : eAlaLeuGlyGlnLeuLeuThrAsnThrLeuIleIleCysCysLeuGlyPheLeuM : 542 ||||||| !|||! !||| !|||||||||:!!|||||||||:!!|||||||||! eAlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGlyPheLeuI 1394328 : TGCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGATTCTTAA : 1394384 543 : etIleThrValIleAsn : 547 !::!!! !|||! ||| leValIleValSerAsn 1394385 : TAGTAATTGTAAGtaat : 1394401 vulgar: Lalb_14641 504 547 . KQ414716.1 1394272 1394401 + 123 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394273 1394401 123 + . gene_id 12 ; sequence Lalb_14641 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1394273 1394401 . + . KQ414716.1 exonerate:protein2genome:local exon 1394273 1394401 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394273 1394401 123 + . alignment_id 12 ; Query Lalb_14641 ; Align 1394273 505 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14638 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 469 Query range: 0 -> 199 Target range: 1405074 -> 1406100 1 : MetThrIleArgSerThrValSerLysSerValArgTyrGlyLeuHisPheIleGl : 19 |||||| ! !!:!|||:!!|||:!!!!!|||!:!:!!||||||!.!!:! !!. MetThrSerIleAsnThrIleSerGlnThrValLysHisGlyLeuArgTyrAlaAl 1405075 : atgaCATCGATTAATACGATAAGTCAAACTGTAAAACATGGCCTCCGTTATGCTGC : 1405129 20 : yIleTrpProAspThrProPheProGlyLeuHisLysPheTyrTrpIleSerThrT : 38 ! !||||||! ||||||! ||||||||||||:::||| !! !..!! aSerTrpProGlyThrProSerLeuIleLeuHisLysPhePheTrpThrIleValM 1405130 : CTCTTGGCCAGGAACACCATCGTtgattttacataaatttttttggaCAATTGTCA : 1405186 39 : hrIleIleTrpGlnPheTyrGlnCysLysTyrMetIleThrHisPheLysThrAsp : 56 ! ! ! |||.!!||||||! ! |||:!!|||! !|||!:!||| !:!! etCysGlyLeuGlnIleTyrGlnTyrGlyTyrValIleArgHisTyrLysTyrAsn 1405187 : TGTGTGGACTTCAAATTTATCAGTACGGCTACGTGATCAGGCATTATAAATATAAC : 1405240 57 : AspLeuThrLysThrIleAspCysLeuSerMetThrLeuProTyrThrLeuLeuIl : 75 !|||..! ! |||:!!||| !||||||!!: !:!!|||!:!||||||:!! ThrLeuValAspThrValAspAsnLeuSerIleCysMetProPheThrLeuValCy 1405241 : ACTCTTGTGGATACAGTAGATAATTTGAGCATTTGCATGCCATTCACTTTAGTGTG : 1405297 76 : eAlaLysLeuSerValValTrpIleAsnHis{As} >>>> Target Intron : 86 ! !||||||! !|||!.!|||! !:!!!.!{..} 429 bp sIleLysLeuPheValAlaTrpThrHisArg{Gl}++ 1405298 : CATCAAATTATTTGTTGCTTGGACACATCGC{GG}gt................... : 1405334 87 : 1 >>>> {n}ValLeuSerGluMetLeuSerThrMetGluGluAspCysValLys : 101 {!}:!!|||! !!!:!!::!!||||||||||||||||||||| !||| ++{y}LeuLeuTyrAspIleIleSerThrMetGluGluAspCysLysLys 1405335 : ......ag{t}CTACTTTACGACATTATCTCGACCATGGAAGAAGACTGTAAAAAG : 1405804 102 : TyrGlyMetIleAspAlaAsnAsnValIleSerLysThrAlaGluPheSerTyrAr : 120 |||!.!:!::::|||......|||:::|||||||||||||||.!..!.|||!:!|| TyrAlaValLeuAspThrLysAsnLeuIleSerLysThrAlaHisLeuSerPheAr 1405805 : TACGCTGTTCttgatacaaaaaatttaatatcaaaaaCAGCACATCTATCTTTTCG : 1405861 121 : gIleThrSerLeuValThrValLeuTyrLeuSerSerAlaSerGlyValAlaAlaG : 139 |:!!|||!:!:!!|||! ! !:!!! !:!!||||||.!!:!! !! !||| !| gLeuThrAsnIleValIleCysIleCysValSerSerThrAlaCysTyrAlaIleG 1405862 : ATTAACCAATATAGTGATATGTATCTGTGTATCATCCACGGCATGTTATGCAATTG : 1405918 140 : lyAsnLeuAlaPheProArgTyrAsnGluThrValAspArgGlnLeuLeuSerAsn : 157 || !|||||| ! !||| !||| !|||!.! !|||:!!||||||! !!!. lyValLeuAlaProGlnArgThrAsnIleThrAlaProArgGluLeuLeuIleLys 1405919 : GAGTTTTGGCGCCACAAAGGACTAATATAACAGCACCTCGAGAACTTTTGATAAAA : 1405972 158 : MetAspLeuProPheAsnThrAsnGluSerProThrTyrGluLeuValValThrAl : 176 ||||||||||||||||||||||||.!.||||||! !||||||||||||:!!..! MetAspLeuProPheAsnThrAsnAsnSerProIleTyrGluLeuValIleValLe 1405973 : ATGGACTTGCCATTTAATACGAACAATTCGCCTATTTACGAGCTGGTAATAGTTTT : 1406029 177 : aGlnValLeuHisGlnMetAlaSerAlaTyrValPheGlyValPheSerAlaLeuL : 195 !||| !||| !:!!:!::!!!!!|||!:!..!|||||||||||||||::!|||| uGlnTyrLeuCysLysValSerThrAlaPheThrPheGlyValPheSerSerLeuL 1406030 : ACAATACCTATGCAAAGTATCGACAGCTTTTACGTTTGGTGTATTCAGCAGTCTGC : 1406086 196 : euValMetLeuIle : 199 ||:!!|||:!!:!! euLeuMetMetVal 1406087 : TTTTGATGATGGTA : 1406100 vulgar: Lalb_14638 0 199 . KQ414716.1 1405074 1406100 + 469 M 85 255 S 0 2 5 0 2 I 0 425 3 0 2 S 1 1 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1405075 1406100 469 + . gene_id 1 ; sequence Lalb_14638 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1405075 1405331 . + . KQ414716.1 exonerate:protein2genome:local exon 1405075 1405331 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1405332 1405333 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1405332 1405760 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1405759 1405760 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1405761 1406100 . + . KQ414716.1 exonerate:protein2genome:local exon 1405761 1406100 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1405075 1406100 469 + . alignment_id 1 ; Query Lalb_14638 ; Align 1405075 1 255 ; Align 1405762 87 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14638 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 460 Query range: 198 -> 363 Target range: 1401021 -> 1402603 199 : IleLeuHisValGlyCysIleIleAspIleLeuCysAspThrIleValArgIleSe : 217 :!!||||||:!!|||||| !|||||||||:!!||| !.!:!::!! !:!!|| ValLeuHisLeuGlyCysGlnIleAspIleMetCysArgAsnLeuLeuAspValSe 1401022 : GTACTTCATCTAGGATGTCAAATCGACATCATGTGCCGAAATTTGCTAGACGTTTC : 1401076 218 : rSerLysGluIleGluLysLeuArgLeuValAlaLeuArgHisGlnGluIleIleV : 236 |! !|||!!: ::::::::::::... !||||||||||||||||||| rPheLysAspGlyLysGlnIleLysPhePheIleAsnArgHisGlnGluIleIleV 1401077 : CTTCAAAGACggaaaacaaataaaattcttcattaACAGACATCAGGAAATTATTG : 1401133 237 : alPheAlaAspArgIleGluGlnLeuPheThrTyrIleAlaLeuCysGlnLeuLeu : 254 ||||||||!!:|||||||||:!!||||||||||||!!:|||||| !!||||||:!! alPheAlaGluArgIleGluLysLeuPheThrTyrMetAlaLeuSerGlnLeuVal 1401134 : TTTTTGCAGAAAGAATTGAGAAACTTTTTACATACATGGCTCTCAGTCAACTTGTG : 1401187 255 : LeuAsnThrLeuValThrCysCysLeuGlyPheLeuAlaIleThr >>>> Targ : 270 ! !||||||:!!:!!! !||||||:!!|||||||||!.!:!!! ! SerAsnThrIleIleIleCysCysValGlyPheLeuValValIle++ 1401188 : TCCAATACGATAATTATATGTTGCGTAGGATTTCTCGTTGTAATTgt......... : 1401237 271 : et Intron 1 >>>> AlaIleLysThrGluHisGlyLeuProLeuLeuLeuLy : 282 83 bp |||:!! ! ! !!!::!!|||:!!|||||||||||||| ++AlaValHisIleAspAsnGlyValProLeuLeuLeuLy 1401238 : ................aggCAGTACATATCGACAATGGAGTTCCTCTGTTACTCAa : 1401354 283 : sSerSerSerPheTyrAlaValLeuCysLeuGluIlePheIleTyrCysPheAlaG : 301 |||| ||||||...|||:!!||||||||| |||||||||||||||!.!| sSerLeuLeuPheTyrValValIleCysLeuGluAlaPheIleTyrCysPheValG 1401355 : atctcttttattttatgtgGTTATTTGTTTAGAAGCGTTTATATACTGCTTTGTCG : 1401411 302 : lyGluTyrLeuAsnValLys >>>> Target Intron 2 >>>> AsnGlnM : 310 |||||||||||!:!:!!||| 1004 bp !:!|||: lyGluTyrLeuSerIleLys++ ++SerGlnL 1401412 : GAGAATATCTCAGTATCAAGgt.........................agAGCCAAC : 1402442 311 : etIleIleAspAlaAlaTyrGlnMetThrTrpTyrAspLeuGlnProAspIleSer : 328 !:||| !:!!.!!||||||:!!.!. !||||||||||||!:: !! ! !||| euIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSer 1402443 : TAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAGC : 1402496 329 : ArgGlnIleValPheIleMetLeuLysSerGlnLysGlyLeuProLeuThrPheGl : 347 !:!! :!!:!! !:!!!!:|||!:!||||||||||||!!! !!!..|||||||| GlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGl 1402497 : CAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACGTttacttttgg : 1402553 348 : yLysPheSerThrLeuSerLeuGluSerPheThrGlyIleLeuHisVal : 363 ||||||||||:::|||||||||||||||||||||!.!:!! :::::: yLysPheSerSerLeuSerLeuGluSerPheThrAlaValSerTyrLeu 1402554 : aaaattttcaagtctCTCCTTGGAAAGCTTTACGGCCGTAAGctactta : 1402603 vulgar: Lalb_14638 198 363 . KQ414716.1 1401021 1402603 + 460 M 71 213 5 0 2 I 0 79 3 0 2 M 38 114 5 0 2 I 0 1000 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401022 1402603 460 + . gene_id 2 ; sequence Lalb_14638 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401022 1401234 . + . KQ414716.1 exonerate:protein2genome:local exon 1401022 1401234 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401235 1401236 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401235 1401317 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1401316 1401317 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1401318 1401431 . + . KQ414716.1 exonerate:protein2genome:local exon 1401318 1401431 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401432 1401433 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401432 1402435 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1402434 1402435 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402436 1402603 . + . KQ414716.1 exonerate:protein2genome:local exon 1402436 1402603 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401022 1402603 460 + . alignment_id 2 ; Query Lalb_14638 ; Align 1401022 199 213 ; Align 1401318 270 114 ; Align 1402436 308 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14638 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 328 Query range: 359 -> 473 Target range: 1401021 -> 1401446 360 : IleLeuHisValGlyCysLeuIleAspIleLeuCysAspIleLeuAlaGlnIleSe : 378 :!!||||||:!!||||||! !|||||||||:!!||| ! !||| !.!.:!!|| ValLeuHisLeuGlyCysGlnIleAspIleMetCysArgAsnLeuLeuAspValSe 1401022 : GTACTTCATCTAGGATGTCAAATCGACATCATGTGCCGAAATTTGCTAGACGTTTC : 1401076 379 : rAlaGlnGluGluAspLysLeuArgPheValAlaIleArgHisGlnGluIleValA : 397 | !:!!!!: :::::::::||| !|||||||||||||||:!!! rPheLysAspGlyLysGlnIleLysPhePheIleAsnArgHisGlnGluIleIleV 1401077 : CTTCAAAGACggaaaacaaataaaattcttcattaACAGACATCAGGAAATTATTG : 1401133 398 : spPheAlaGluArgIleGluLysLeuPheThrHisIleSerLeuCysGlnLeuMet : 415 !||||||||||||||||||||||||||||||:!!!!::!!||| !!||||||:!! alPheAlaGluArgIleGluLysLeuPheThrTyrMetAlaLeuSerGlnLeuVal 1401134 : TTTTTGCAGAAAGAATTGAGAAACTTTTTACATACATGGCTCTCAGTCAACTTGTG : 1401187 416 : SerAsnThrLeuValThrCysCysLeuGlyTyrLeuValIleThr >>>> Targ : 431 |||||||||:!!:!!! !||||||:!!|||!:!||||||:!!! ! SerAsnThrIleIleIleCysCysValGlyPheLeuValValIle++ 1401188 : TCCAATACGATAATTATATGTTGCGTAGGATTTCTCGTTGTAATTgt......... : 1401237 432 : et Intron 1 >>>> AlaValLysSerAspAsnGlyLeuProLeuLeuLeuAr : 443 83 bp |||||| ! ! !|||||||||:!!||||||||||||!: ++AlaValHisIleAspAsnGlyValProLeuLeuLeuLy 1401238 : ................aggCAGTACATATCGACAATGGAGTTCCTCTGTTACTCAa : 1401354 444 : gSerPheSerAlaTyrThrValIleCysLeuGluIlePheIleTyrCysCysAlaG : 462 :|||... |||...||||||||||||||| ||||||||||||! !!.!| sSerLeuLeuPheTyrValValIleCysLeuGluAlaPheIleTyrCysPheValG 1401355 : atctcttttattttatgtgGTTATTTGTTTAGAAGCGTTTATATACTGCTTTGTCG : 1401411 463 : lyGluTyrLeuAsnAsnLysValAsnLysPheTyr : 473 |||||||||||!:!! !||||||! !|||! ||| lyGluTyrLeuSerIleLysValIleLys***Tyr 1401412 : GAGAATATCTCAGTATCAAGGTCATTAAATAATAT : 1401446 vulgar: Lalb_14638 359 473 . KQ414716.1 1401021 1401446 + 328 M 71 213 5 0 2 I 0 79 3 0 2 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401022 1401446 328 + . gene_id 3 ; sequence Lalb_14638 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401022 1401234 . + . KQ414716.1 exonerate:protein2genome:local exon 1401022 1401234 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401235 1401236 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401235 1401317 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1401316 1401317 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1401318 1401446 . + . KQ414716.1 exonerate:protein2genome:local exon 1401318 1401446 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401022 1401446 328 + . alignment_id 3 ; Query Lalb_14638 ; Align 1401022 360 213 ; Align 1401318 431 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14638 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 316 Query range: 359 -> 471 Target range: 1408216 -> 1408644 360 : IleLeuHisValGlyCysLeuIleAspIleLeuCysAspIleLeuAlaGlnIleSe : 378 :!:||||||:!!||||||! !|||||||||:!!|||.!.! !||| !:!!:!! ! ValLeuHisLeuGlyCysGlnIleAspIleMetCysGlnThrLeuLysGluValPr 1408217 : GTGCTTCATCTAGGTTGTCAAATCGATATTATGTGCCAGACATTAAAGGAGGTTCC : 1408271 379 : rAlaGlnGluGluAspLysLeuArgPheValAlaIleArgHisGlnGluIleValA : 397 ! !:!!.!.:!! !:!!||||||||| !! !! !|||||||||:!!|||:!! oTyrLysAsnLysThrGlnLeuArgPhePheIleSerArgHisGlnGlnIleIleI 1408272 : TTATAAGAATAAAACTCAACTGAGATTCTTCATCAGCAGACATCAACAGATCATCA : 1408328 398 : spPheAlaGluArgIleGluLysLeuPheThrHisIleSerLeuCysGlnLeuMet : 415 ||||||||||||||||||||||||||||||:!!:!!:!!||| !!||||||:!: lePheAlaGluArgIleGluLysLeuPheThrTyrLeuAlaLeuSerGlnLeuLeu 1408329 : TATTTGCAGAGAGAATAGAAAAACTGTTTACGTATCTAGCACTTAGTCAACTTCTC : 1408382 416 : SerAsnThrLeuValThrCysCysLeuGlyTyrLeuValIleThr >>>> Targ : 431 ||||||||||||:!!|||||||||:!!||||||:!!:!! ! ! SerAsnThrLeuIleThrCysCysValGlyTyrIleIleAlaPhe++ 1408383 : TCGAATACCCTAATTACTTGCTGCGTGGGTTATATTATCGCATTTgt......... : 1408432 432 : et Intron 1 >>>> AlaValLysSerAspAsnGlyLeuProLeuLeuLeuAr : 443 92 bp |||:!!:!!!:!:!!||||||!!! !:!!|||:!!!: ++AlaLeuGlnAsnAsnAsnGlyPheLysMetLeuIleLy 1408433 : ................agGCACTACAAAATAATAATGGATTTAAAATGTTGATCAA : 1408558 444 : gSerPheSerAlaTyrThrValIleCysLeuGluIlePheIleTyrCysCysAlaG : 462 !! ! !! ! !|||! !!.!:!:|||! !||| ||||||||||||! !|||| sPheValValTyrTyrMetAlaValCysSerGluAlaPheIleTyrCysPheAlaG 1408559 : ATTTGTTGTATATTACATGGCTGTGTGCTCAGAAGCGTTCATATACTGCTTTGCTG : 1408615 463 : lyGluTyrLeuAsnAsnLysValAsnLys : 471 ||||||||||||||! !|||||| !||| lyGluTyrLeuAsnIleLysValValLys 1408616 : GAGAGTACCTTAATATCAAGGTCGTTAAA : 1408644 vulgar: Lalb_14638 359 471 . KQ414716.1 1408216 1408644 + 316 M 71 213 5 0 2 I 0 88 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408217 1408644 316 + . gene_id 4 ; sequence Lalb_14638 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408217 1408429 . + . KQ414716.1 exonerate:protein2genome:local exon 1408217 1408429 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408430 1408431 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408430 1408521 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1408520 1408521 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1408522 1408644 . + . KQ414716.1 exonerate:protein2genome:local exon 1408522 1408644 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408217 1408644 316 + . alignment_id 4 ; Query Lalb_14638 ; Align 1408217 360 213 ; Align 1408522 431 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14638 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 313 Query range: 198 -> 307 Target range: 1408216 -> 1408635 199 : IleLeuHisValGlyCysIleIleAspIleLeuCysAspThrIleValArgIleSe : 217 :!:||||||:!!|||||| !|||||||||:!!|||.!.|||:!! !..!:!! ! ValLeuHisLeuGlyCysGlnIleAspIleMetCysGlnThrLeuLysGluValPr 1408217 : GTGCTTCATCTAGGTTGTCAAATCGATATTATGTGCCAGACATTAAAGGAGGTTCC : 1408271 218 : rSerLysGluIleGluLysLeuArgLeuValAlaLeuArgHisGlnGluIleIleV : 236 !! !|||.!.! ! :!!||||||!!! !! ! !|||||||||:!!||||||: oTyrLysAsnLysThrGlnLeuArgPhePheIleSerArgHisGlnGlnIleIleI 1408272 : TTATAAGAATAAAACTCAACTGAGATTCTTCATCAGCAGACATCAACAGATCATCA : 1408328 237 : alPheAlaAspArgIleGluGlnLeuPheThrTyrIleAlaLeuCysGlnLeuLeu : 254 !!||||||!!:|||||||||:!!||||||||||||:!!|||||| !!||||||||| lePheAlaGluArgIleGluLysLeuPheThrTyrLeuAlaLeuSerGlnLeuLeu 1408329 : TATTTGCAGAGAGAATAGAAAAACTGTTTACGTATCTAGCACTTAGTCAACTTCTC : 1408382 255 : LeuAsnThrLeuValThrCysCysLeuGlyPheLeuAlaIleThr >>>> Targ : 270 ! !|||||||||:!!|||||||||:!!|||!:!:!! ! ! ! SerAsnThrLeuIleThrCysCysValGlyTyrIleIleAlaPhe++ 1408383 : TCGAATACCCTAATTACTTGCTGCGTGGGTTATATTATCGCATTTgt......... : 1408432 271 : et Intron 1 >>>> AlaIleLysThrGluHisGlyLeuProLeuLeuLeuLy : 282 92 bp |||:!!:!!!.!.!.:!!|||!!! !:!!|||:!!|| ++AlaLeuGlnAsnAsnAsnGlyPheLysMetLeuIleLy 1408433 : ................agGCACTACAAAATAATAATGGATTTAAAATGTTGATCAA : 1408558 283 : sSerSerSerPheTyrAlaValLeuCysLeuGluIlePheIleTyrCysPheAlaG : 301 |! ! ! !!:!||| !!.!:!!|||! !||| ||||||||||||||||||| sPheValValTyrTyrMetAlaValCysSerGluAlaPheIleTyrCysPheAlaG 1408559 : ATTTGTTGTATATTACATGGCTGTGTGCTCAGAAGCGTTCATATACTGCTTTGCTG : 1408615 302 : lyGluTyrLeuAsnValLys : 307 ||||||||||||||:!!||| lyGluTyrLeuAsnIleLys 1408616 : GAGAGTACCTTAATATCAAG : 1408635 vulgar: Lalb_14638 198 307 . KQ414716.1 1408216 1408635 + 313 M 71 213 5 0 2 I 0 88 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408217 1408635 313 + . gene_id 5 ; sequence Lalb_14638 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408217 1408429 . + . KQ414716.1 exonerate:protein2genome:local exon 1408217 1408429 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408430 1408431 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408430 1408521 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1408520 1408521 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1408522 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408522 1408635 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408217 1408635 313 + . alignment_id 5 ; Query Lalb_14638 ; Align 1408217 199 213 ; Align 1408522 270 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14638 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 308 Query range: 77 -> 199 Target range: 1398592 -> 1398958 78 : LeuSerValValTrpIleAsnHisAsnValLeuSerGluMetLeuSerThrMetGl : 96 |||||| !:!! !||| !|||!:!|||!!!|||!!:!!:|||||||||||||| LeuSerLysIleThrIlePheHisSerValPheSerAspIleLeuSerThrMetGl 1398593 : ttgtCTAAAATAACGATATTTCACAGCGTATTTAGTGACATTTTATCAACCATGGA : 1398647 97 : uGluAspCysValLysTyrGlyMetIleAspAlaAsnAsnValIleSerLysThrA : 115 |||||||||| !||||||!.! |||||| !|||!!.:!!!!:|||||||||! uGluAspCysGlnLysTyrAlaAlaIleAspIleAsnLysLeuMetSerLysThrG 1398648 : AGAGGATTGTCAGAAATATGCTGCTATAGATATAAATAAGTTGATGTCAAAAACCG : 1398704 116 : laGluPheSerTyrArgIleThrSerLeuValThrValLeuTyrLeuSerSerAla : 133 .!:!:...|||::: :::||||||:!!|||! ! !||||||:!!:!!|||||| lyGlnLeuSerPheTyrLeuThrSerIleValMetSerLeuTyrMetAlaSerAla 1398705 : GACAgctatctttttatttaacaagcATTGTTATGTCTTTGTATATGGCATCTGCA : 1398758 134 : SerGlyValAlaAlaGlyAsnLeuAlaPheProArgTyrAsnGluThrValAspAr : 152 :!! ! ! !.!!..!!.!:!!!.!|||! ! !! !!|||! :!!|||..!|| AlaPheTyrIleThrAsnThrIleGlyPheGlnGlyAsnAsnAlaSerValSerAr 1398759 : GCATTTTACATAACTAATACTATTGGATTTCAAGGAAATAATGCTTCAGTATCTCG : 1398815 153 : gGlnLeuLeuSerAsnMetAspLeuProPheAsnThrAsnGluSerProThrTyrG : 171 |:!!||||||! !!!.|||||||||||||||.!.|||!:!|||||||||!.!|||| gGluLeuLeuMetLysMetAspLeuProPheGluThrSerGluSerProAsnTyrG 1398816 : GGAGCTCCTTATGAAAATGGATTTGCCTTTCGAGACCAGCGAATCGCCGAATTACG : 1398872 172 : luLeuValValThrAlaGlnValLeuHisGlnMetAlaSerAlaTyrValPheGly : 189 ||||||||||||||.!!||||||||| !!!.:!::!! !||| !.!!:!||| luLeuValValThrThrGlnValLeuIleHisLeuSerValAlaValAlaTyrGly 1398873 : AACTTGTAGTAACTACACAGGTCCTTATTCACTTATCAGTGGCCGTAGCATACGGT : 1398926 190 : ValPheSerAlaLeuLeuValMetLeuIle : 199 !.!|||!:!|||||||||:!!|||:!!:!! AlaPheAsnAlaLeuLeuLeuMetValVal 1398927 : GCATTCAATGCTCTTCTCTTAATGGTGGTA : 1398958 vulgar: Lalb_14638 77 199 . KQ414716.1 1398592 1398958 + 308 M 122 366 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1398593 1398958 308 + . gene_id 6 ; sequence Lalb_14638 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1398593 1398958 . + . KQ414716.1 exonerate:protein2genome:local exon 1398593 1398958 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1398593 1398958 308 + . alignment_id 6 ; Query Lalb_14638 ; Align 1398593 78 366 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14638 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 285 Query range: 229 -> 360 Target range: 1394272 -> 1395482 230 : ArgHisGlnGluIleIleValPheAlaAspArgIleGluGlnLeuPheThrTyrIl : 248 ||||||!!...!||||||:!! !:!!||| !||||||...||||||:!!||||| ArgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIl 1394273 : AGACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACAT : 1394327 249 : eAlaLeuCysGlnLeuLeuLeuAsnThrLeuValThrCysCysLeuGlyPheLeuA : 267 ||||||| |||! !|||! !||||||||||||! !||||||:!!||||||||| eAlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGlyPheLeuI 1394328 : TGCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGATTCTTAA : 1394384 268 : laIleThr >>>> Target Intron 1 >>>> AlaIleLysThrGluHisG : 276 !:!!! ! 464 bp |||.!!!!.|||!:: . leValIle++ ++AlaPheAsnThrAspGlyA 1394385 : TAGTAATTgt.........................agGCATTTAATACAGatggaa : 1394875 277 : lyLeuProLeuLeuLeuLysSerSerSerPheTyrAlaValLeuCysLeuGluIle : 294 ..::: ...:::|||::: ! !|||||| !!.!:!! !:!!||| ! snIleLysThrPheIleLysThrLeuLeuPheTyrIleAlaIleThrMetGluAla 1394876 : atataaaaacatttataaaaacattACTCTTTTACATCGCTATCACTATGGAAGCA : 1394929 295 : PheIleTyrCysPheAlaGlyGluTyrLeuAsnValLys >>>> Target Int : 308 ||||||!:!! !||||||||||||||||||!:! !||| 353 b PheIlePheSerPheAlaGlyGluTyrLeuSerAsnLys++ 1394930 : TTCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAAgt............... : 1394973 309 : ron 2 >>>> AsnGlnMetIleIleAspAlaAlaTyrGlnMetThrTrpTyrAs : 322 p !:!! ! |||! !:!!|||||||||... !!|||||| ++SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLe 1394974 : ..........agAGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCT : 1395366 323 : pLeuGlnProAspIleSerArgGlnIleValPheIleMetLeuLysSerGlnLysG : 341 !|||.!.|||.!. !!!!!.! |||:!!.!!:!!|||:!!!:!||||||!:! uLeuAspProGlnAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgA 1395367 : TCTGGATCCTCAAGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGAC : 1395423 342 : lyLeuProLeuThrPheGlyLysPheSerThrLeuSerLeuGluSerPheThrGly : 359 !!||| !!:!!||| !|||||||||! ! !||||||||||||.!!|||.!!..! rgLeuThrIleThrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsn 1395424 : GATTAACAATCACCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAAT : 1395477 360 : Ile : 360 :!! Val 1395478 : GTA : 1395482 vulgar: Lalb_14638 229 360 . KQ414716.1 1394272 1395482 + 285 M 40 120 5 0 2 I 0 460 3 0 2 M 38 114 5 0 2 I 0 349 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394273 1395482 285 + . gene_id 7 ; sequence Lalb_14638 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394273 1394392 . + . KQ414716.1 exonerate:protein2genome:local exon 1394273 1394392 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394393 1394394 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394393 1394856 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394855 1394856 . + . intron_id 0 ; splice_site "aG" KQ414716.1 exonerate:protein2genome:local cds 1394857 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394857 1394970 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394971 1394972 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394971 1395323 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1395322 1395323 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394273 1395482 285 + . alignment_id 7 ; Query Lalb_14638 ; Align 1394273 230 120 ; Align 1394857 270 114 ; Align 1395324 308 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14638 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 0 -> 82 Target range: 1390523 -> 1390769 1 : MetThrIleArgSerThrValSerLysSerValArgTyrGlyLeuHisPheIleGl : 19 |||:!! !!.!!.!!:!:!!|||::: !!|||..! !||||||...!!.! !|| MetSerHisAsnLysSerIleSerArgProValGluIleGlyLeuArgLeuThrGl 1390524 : ATGTCGCATAACAAAAGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGG : 1390578 20 : yIleTrpProAspThrProPheProGlyLeuHisLysPheTyrTrpIleSerThrT : 38 ||||||||||! !:!! !!!:! ! !:!! !::! ! !||||||! ! !! yIleTrpProGlySerSerTyrGluIleIleValArgValThrTrpIleIleLeuM 1390579 : AATTTGGCCAGGTTCATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTA : 1390635 39 : hrIleIleTrpGlnPheTyrGlnCysLysTyrMetIleThrHisPheLysThrAsp : 56 !! !:!! |||.!.!:!|||! !::!|||!!:|||! !|||.!! ! !..! etThrValValGlnIlePheGlnTyrArgTyrIleIleLysHisLeuAspGlySer 1390636 : TGACAGTTGTACAAATATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGT : 1390689 57 : AspLeuThrLysThrIleAspCysLeuSerMetThrLeuProTyrThrLeuLeuIl : 75 :!!|||.!!!!. !|||||| !!:!!.!!! ||||||||||||!:!|||||| AsnLeuAlaAsnLeuIleAspSerValGlyThrThrLeuProTyrSerLeuLeuTy 1390690 : AATCTGGCGAACTTAATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTA : 1390746 76 : eAlaLysLeuSerValValTrp : 82 !...|||||| ::: ||| rValLysLeuIleIlePheTrp 1390747 : Tgtcaaattaattattttctgg : 1390769 vulgar: Lalb_14638 0 82 . KQ414716.1 1390523 1390769 + 150 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390524 1390769 150 + . gene_id 8 ; sequence Lalb_14638 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1390524 1390769 . + . KQ414716.1 exonerate:protein2genome:local exon 1390524 1390769 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390524 1390769 150 + . alignment_id 8 ; Query Lalb_14638 ; Align 1390524 1 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14638 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 303 -> 360 Target range: 1409037 -> 1409208 304 : LeuAsnValLysAsnGlnMetIleIleAspAlaAlaTyrGlnMetThrTrpTyrAs : 322 :!!:!! !!::::::::::::||| |||.!!||||||:!!.!. !||||||:! IleAspPheGlnSerLysLeuIleGlyAspThrAlaTyrGluPheLeuTrpTyrAs 1409038 : ATTGATTTTcagagtaaactgattggagACACGGCGTATGAATTTCTTTGGTATAA : 1409092 323 : pLeuGlnProAspIleSerArgGlnIleValPheIleMetLeuLysSerGlnLysG : 341 !:!!!!. !! ! !||||||! !!::!!.!!:!!!!:|||::!|||||||||| nMetHisSerLysGluSerArgLeuMetLeuLeuValIleLeuArgSerGlnLysG 1409093 : TATGCATTCGAAGGAAAGCCGACTTATGTTGCTTGTAATACTACGATCACAGAAAG : 1409149 342 : lyLeuProLeuThrPheGlyLysPheSerThrLeuSerLeuGluSerPheThrGly : 359 ||!!! ! ...|||||||||||||||::::::||||||:!!|||||||||.!!||| lyPheThrPheThrPheGlyLysPheAlaSerLeuSerMetGluSerPheAlaGly 1409150 : GATTTACtttcacttttggaaaatttgcaagtCTTTCCATGGAAAGTTTTGCAGGC : 1409203 360 : Ile : 360 :!! Val 1409204 : GTA : 1409208 vulgar: Lalb_14638 303 360 . KQ414716.1 1409037 1409208 + 143 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1409038 1409208 143 + . gene_id 9 ; sequence Lalb_14638 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1409038 1409208 . + . KQ414716.1 exonerate:protein2genome:local exon 1409038 1409208 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1409038 1409208 143 + . alignment_id 9 ; Query Lalb_14638 ; Align 1409038 304 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14638 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 384 -> 433 Target range: 1387203 -> 1387350 385 : LeuArgPheValAlaIleArgHisGlnGluIleValAspPheAlaGluArgIleGl : 403 :!!!:! !|||!.!:!!|||||||||..!|||:!! .!.:!!:!!!.!||||| IleLysAspValValValArgHisGlnArgIleIleArgLeuSerLysAsnIleGl 1387204 : ATAAAGGATGTCGTTGTTAGGCATCAACGAATTATACGACTGTCTAAAAATATCGA : 1387258 404 : uLysLeuPheThrHisIleSerLeuCysGlnLeuMetSerAsnThrLeuValThrC : 422 |! !:!!||||||:!!|||||||||||||||...:::|||||| ||||||! !| uThrValPheThrTyrIleSerLeuCysGlnPheLeuSerAsnMetLeuValIleC 1387259 : GACAGTTTTTACTTATATATCATTATgccaatttttatcgaatatgcTGGTTATCT : 1387315 423 : ysCysLeuGlyTyrLeuValIleThrAlaValLys : 433 ||! !:!!.!!!:!:!!:!!:!!|||!.. ||| ysPheIleSerPheValLeuValThrValSerLys 1387316 : GTTTCATAAGCTTCGTTTTGGTAACCGtaagtaaa : 1387350 vulgar: Lalb_14638 384 433 . KQ414716.1 1387203 1387350 + 124 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387204 1387350 124 + . gene_id 10 ; sequence Lalb_14638 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387204 1387350 . + . KQ414716.1 exonerate:protein2genome:local exon 1387204 1387350 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387204 1387350 124 + . alignment_id 10 ; Query Lalb_14638 ; Align 1387204 385 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14638 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 223 -> 272 Target range: 1387203 -> 1387350 224 : LeuArgLeuValAlaLeuArgHisGlnGluIleIleValPheAlaAspArgIleGl : 242 :!!!:! !|||!.!:!!|||||||||..!|||||| !.!.:!! ! !.!||||| IleLysAspValValValArgHisGlnArgIleIleArgLeuSerLysAsnIleGl 1387204 : ATAAAGGATGTCGTTGTTAGGCATCAACGAATTATACGACTGTCTAAAAATATCGA : 1387258 243 : uGlnLeuPheThrTyrIleAlaLeuCysGlnLeuLeuLeuAsnThrLeuValThrC : 261 | !:!!||||||||||||:!!|||||||||...||| ||| ||||||! !| uThrValPheThrTyrIleSerLeuCysGlnPheLeuSerAsnMetLeuValIleC 1387259 : GACAGTTTTTACTTATATATCATTATgccaatttttatcgaatatgcTGGTTATCT : 1387315 262 : ysCysLeuGlyPheLeuAlaIleThrAlaIleLys : 272 ||! !:!!.!!|||:!! !:!!|||!.. ||| ysPheIleSerPheValLeuValThrValSerLys 1387316 : GTTTCATAAGCTTCGTTTTGGTAACCGtaagtaaa : 1387350 vulgar: Lalb_14638 223 272 . KQ414716.1 1387203 1387350 + 118 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387204 1387350 118 + . gene_id 11 ; sequence Lalb_14638 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387204 1387350 . + . KQ414716.1 exonerate:protein2genome:local exon 1387204 1387350 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387204 1387350 118 + . alignment_id 11 ; Query Lalb_14638 ; Align 1387204 224 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14638 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 307 -> 360 Target range: 1387619 -> 1387778 308 : AsnGlnMetIleIleAspAlaAlaTyrGlnMetThrTrpTyrAspLeuGlnProAs : 326 ::::!! |||! !.!.:!:...|||...... ||||||||||||:!!||| SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 327 : pIleSerArgGlnIleValPheIleMetLeuLysSerGlnLysGlyLeuProLeuT : 345 !:!!||| ::::::...|||:::|||:::|||||||||! !||| !|||| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 346 : hrPheGlyLysPheSerThrLeuSerLeuGluSerPheThrGlyIle : 360 || ||||||||| !!.!|||||||||! :!!|||.!!...::: hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: Lalb_14638 307 360 . KQ414716.1 1387619 1387778 + 117 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387778 117 + . gene_id 12 ; sequence Lalb_14638 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387778 117 + . alignment_id 12 ; Query Lalb_14638 ; Align 1387620 308 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14641 [mRNA] [translate_table: standard] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 159 -> 209 Target range: 1345579 -> 1345729 160 : GluAlaAlaTyrGluIleSerTrpTyrAsnMetArgProSerMetSerArgGlnVa : 178 :!!|||..!||| ! !!:!||||||:!!:!:! ! !!.! !!!|||..!:! GlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLysTyrThrArgSerLe 1345580 : CAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAAATACACGCGATCGTT : 1345634 179 : lIleLeuLeuLeuSerArgSerGlnLysGlyLeuCysLeuThrPheGlyLysPheS : 197 !|||!!!! !:!!:!!|||||||||||| !! !! !|||||| !|||||||||! uIlePheCysIleAlaArgSerGlnLysProSerTyrLeuThrAlaGlyLysPheT 1345635 : AATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAGCTGGCAAGTTCT : 1345691 198 : erAlaLeuSerLeuGluThrPheThrTrpValSerVal : 209 !!.!!!!||||||||||||||| ! ||||||:!! yrValPheSerLeuGluThrPheGlyIleValSerLeu 1345692 : ACGTGTTCTCGTTAGAAACATTCGGCATCGTGAGTTTA : 1345729 vulgar: Lalb_14641 159 209 . KQ414782.1 1345579 1345729 + 102 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345580 1345729 102 + . gene_id 1 ; sequence Lalb_14641 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345580 1345729 . + . KQ414782.1 exonerate:protein2genome:local exon 1345580 1345729 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345580 1345729 102 + . alignment_id 1 ; Query Lalb_14641 ; Align 1345580 160 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 292 -> 374 Target range: 4395115 -> 4395364 293 : LeuLeuThrTyrPheThrLeuLeuValSerPheThrPheAsnIleMetIlePheCy : 311 ||||||! !!:! ! :!!! !|||..!|||.!. ! ! .!.:!!:!!:!!!::|| LeuLeuLysPheValSerTyrLeuThrSerMetGlyValGlnLeuLeuLeuTrpCy 4395116 : CTTCTCAAATTTGTGTCTTATTTAACCTCGATGGGGGTGCAACTTTTGCTATGGTG : 4395170 312 : sTyrValGlyGluLeuLeuSerGluGlnCysSerArgMetGlyProAlaSerTyr< : 330 |!:: !||||||:!!||| !:!!:!! !!! !..!!!:|||! !!.! !||| sTrpProGlyGluIleLeuValGlnGluSerLeuGluIleGlyHisValValTyrL 4395171 : TTGGCCTGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGTCATGTAGTCTATC : 4395227 331 : ->AspIleGlnTrpTyrAsnLeuProProArgArgAlaTyrAsnLeuIleLeuLeu : 347 :!!|||! !||||||||||||||||||! ! ! ! ! .!.||| !|||:!! euAsnIleProTrpTyrAsnLeuProProIleTyrGlnLysGlnLeuCysLeuMet 4395228 : TAAATATACCATGGTACAATTTACCACCGATTTATCAGAAACAACTTTGCCTGATG : 4395281 348 : SerAlaIleSerLeuGluProProLysLeuThrAlaGlyAsnIleIleAspLeuSe : 366 ! ! !! :!!! !:!! ! !!..:!!|||||| !!...!! ! ||||| IleIleArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPheGlnThrLeuSe 4395282 : ATCATTAGGGCCCAACAGTATTGCAGCATTACGGCATTAACGTTTCAAACGTTGTC : 4395338 367 : rIleAsnThrPheGlyAlaValSer : 374 ||||:!!|||!!. !||||||||| rIleHisThrLeuThrAlaValSer 4395339 : TATTCACACGTTAACAGCCGTAAGT : 4395364 vulgar: Lalb_14625 292 374 . KQ414784.1 4395115 4395364 + 105 M 37 111 G 0 3 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4395116 4395364 105 + . gene_id 1 ; sequence Lalb_14625 ; gene_orientation . KQ414784.1 exonerate:protein2genome:local cds 4395116 4395364 . + . KQ414784.1 exonerate:protein2genome:local exon 4395116 4395364 . + . insertions 3 ; deletions 0 KQ414784.1 exonerate:protein2genome:local similarity 4395116 4395364 105 + . alignment_id 1 ; Query Lalb_14625 ; Align 4395116 293 111 ; Align 4395230 330 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 81 -> 250 Target range: 36527 -> 37037 82 : LysTyrMetTyrLeuIleLeuLysGlyLysSerLeuGlyArgCysValGlnHisLeuGlu : 101 ||| :::::: ||| ! !..! !:!!|||! ! !! :!!...!!.:!! LysLeuIlePheThrIleHisThrSerLeuAlaLeuValPheLeuMetSerGlnIlePhe 36528 : AAACtgattttcacaattcacACGTCTCTAGCGCTAGTATTCTTAATGAGCCAAATATTC : 36585 102 : ArgAspTrpGluMetValThrHisProGlyHisArgSerIleMetLeuLysTyrSerSer : 121 !||||||! ! !! !! !! ! !!||| !! ||||||||| !:!!!.! AspAspTrpAlaGluProIleProGluValAspArgHisThrMetLeuLysThrAlaLys 36586 : GACGACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACGATGCTGAAGACCGCGAAA : 36645 122 : IleSerArgLysLeuIleValLeuCysValValPheLeuTyrSerGlyGlyLeuSerTyr : 141 |||||||||! !:!! !:!!:!!||| !:!!.!. !||| ! !! !|||:!!!:! IleSerArgMetIleSerIleValCysSerIleLeuThrTyrValMetValLeuAlaPhe 36646 : ATTAGTCGAATGATATCCATAGTCTGTTCTATCCTGACGTATGTCATGGTTTTGGCCTTC : 36705 142 : HisThrValLysGlnLeuIleThrLysAspGluSerThrLeuAsnSerThrGluArgPro : 161 :!!:!! |||:!! !:!!.. :!!!:!|||! !.!.! !!.!! ! !! ! LeuSerLeu---GlnIleTrpSerSerMetGlnAsnThrSerGluPheAsnValGlyGly 36706 : TTGTCACTT---CAAATTTGGAGCAGCATGCAAAACACCTCGGAGTTCAACGTAGGAGGA : 36762 162 : PheValTyrProCysPheGluPheIleAsnProGlnAlaSerProAsnTyrGluIleIle : 181 .!.:!! !|||..! !:!! !!.!. !||||||||||||||||||! ! LeuLeuIleProAlaThrPheProTyrAspThrAsnLysSerProAsnTyrGluIleThr 36763 : CTACTTATCCCGGCCACATTTCCATACGACACGAATAAAAGTCCTAATTACGAAATTACT : 36822 182 : PhePheValHisCysLeuSerGlyLeuIleGlnTyrThrIleThrSerAlaMetTyrSer : 201 !::.!!! !!!.! !:!!.!! !:!!:!:... ! ! ! !|||..!.!. !!!!! TrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSerCysPheAspThr 36823 : TGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGATACG : 36882 202 : LeuAlaAlaIlePheValThrHisIleCysGlyArgIleGluIleGlnIleSerArgLeu : 221 !!!!.!|||:!!.!!||| !||||||||||||!:!:!! :!!! !! ! !||| PheValAlaValLeuValLeuHisIleCysGlyGlnLeuThrValLeuArgIleAlaLeu 36883 : TTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTC : 36942 222 : AspGluLeuIleGluGlySer<-><->GluGluLysProIlePheTyrAspArgLeuGly : 239 !!:.!.||| !.!. !!!! !!:.!. ! !! ||| ! !!:||||||||| GluAsnLeuAlaAsnThrThrIleLysAspAsnTyrSerLysPheGlnGluArgLeuGly 36943 : GAGAATCTTGCTAACACGACAATAAAAGACAACTACAGCAAGTTCCAAGAACGATTAGGA : 37002 240 : IleIleIleGlnGluHisAlaGluValLeuArg : 250 !|||:!:!!...!!!. !:!!:!!!!!||| TyrIleValHisArgGlnAsnGlnLeuPheArg 37003 : TACATTGTGCACAGGCAGAATCAATTGTTCAGG : 37037 vulgar: Lalb_14625 81 250 . KQ414804.1 36527 37037 + 102 M 63 189 G 1 0 M 83 249 G 0 6 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36528 37037 102 + . gene_id 1 ; sequence Lalb_14625 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36528 37037 . + . KQ414804.1 exonerate:protein2genome:local exon 36528 37037 . + . insertions 6 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 36528 37037 102 + . alignment_id 1 ; Query Lalb_14625 ; Align 36528 82 189 ; Align 36717 146 249 ; Align 36972 229 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14640 [mRNA] [translate_table: standard] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 303 -> 386 Target range: 34378 -> 34627 304 : IleLysSerGlnMetIleValAspAlaAlaTyrGlnIleAlaTrpTyrGluLeuGlnPro : 323 .!!:!!|||::! !!: !:!!:!!||||||:!! ! !||||||.!.:!!..!||| PheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerPro 34379 : TTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCT : 34436 324 : AsnIleSerArgGlnLeuValLeuLeuIleLeuLysCysGlnArgGlyLeuProLeuThr : 343 !:!!!:! |||:!!!!!:!!!!:! !!:! ! ||| !||| !|||||| ProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThr 34437 : CCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACT : 34496 344 : PheGlyLysPheSerThrLeuSerLeuAspSerPheThrSerIleLeuHisMetGlyCys : 363 |||||||||||||||!!!|||:!!!!:! !|||!:!!!!:!! ! :::... AlaGlyLysPheSerThrPheSerMetGluMetPheSerThrValSerProIleAsnIle 34497 : GCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTGTAAGCccgataaatatt : 34556 364 : HisIleAspIleLeuCysHisValIleThrLysIleThrSerSerLysAspLysLysTyr : 383 |||... ! ! ! ||| |||||| ... ...::: ||| HisPheProLys***MetLysValAspThrLysLysLysLysTyrIleSerGlnPheTyr 34557 : cattttccaaaGTAGATGAAAGTagatacaaaaaagaaaaaatatatttcacaattttat : 34616 384 : PheArgPhe : 386 ||||||||| PheArgPhe 34617 : ttcagattc : 34627 vulgar: Lalb_14640 303 386 . KQ414804.1 34378 34627 + 113 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34379 34627 113 + . gene_id 1 ; sequence Lalb_14640 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 34379 34627 . + . KQ414804.1 exonerate:protein2genome:local exon 34379 34627 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34379 34627 113 + . alignment_id 1 ; Query Lalb_14640 ; Align 34379 304 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14638 [mRNA] [translate_table: standard] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 306 -> 360 Target range: 34381 -> 34543 307 : LysAsnGlnMetIleIleAspAlaAlaTyrGlnMetThrTrpTyrAspLeuGlnProAsp : 326 :!!!:!::! !!:! !:!!:!!||||||:!! !.!||||||:!!:!!..!||| GlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProPro 34382 : CAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCA : 34439 327 : IleSerArgGlnIleValPheIleMetLeuLysSerGlnLysGlyLeuProLeuThrPhe : 346 !:!!!:! :!!:!!|||||||||! !!:!!!! ::: !||| !|||||| GluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAla 34440 : GAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCA : 34499 347 : GlyLysPheSerThrLeuSerLeuGluSerPheThrGlyIle : 360 |||||||||||||||!!!|||:!!|||! !|||!:! !:!! GlyLysPheSerThrPheSerMetGluMetPheSerThrVal 34500 : GGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTGTA : 34543 vulgar: Lalb_14638 306 360 . KQ414804.1 34381 34543 + 106 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34382 34543 106 + . gene_id 1 ; sequence Lalb_14638 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 34382 34543 . + . KQ414804.1 exonerate:protein2genome:local exon 34382 34543 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34382 34543 106 + . alignment_id 1 ; Query Lalb_14638 ; Align 34382 307 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 320 -> 371 Target range: 39974 -> 40127 321 : ValGlyGluLysAlaTyrMetThrGlnTrpTyrArgLeuProHisLysThrAlaThrGly : 340 :!!|||:!!...|||||| !.!.|||||| !||||||! ||| !|||..!..! IleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHisAlaValSer 39975 : ATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCATGCTGTTTCG : 40032 341 : LeuIleLeuLeuIleSerArgSerArgMetValThrArgIleThrAlaGlyLysLeuLeu : 360 |||:!!:!!:!!|||!!!|||:!!!:!:!! ! !!:!|||||||||||||||!!! ! LeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGlyLysPheSer 40033 : TTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGT : 40092 361 : ProIleSerIleSerThrPheGlyAspValSer : 371 |||.!!|||:!!..! !|||..!! !|||||| ProPheSerLeuGluLeuPheAsnAlaValSer 40093 : CCCTTTTCTCTCGAGCTGTTTAACGCTGTGAGT : 40127 vulgar: Lalb_14627 320 371 . KQ414804.1 39974 40127 + 114 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39975 40127 114 + . gene_id 1 ; sequence Lalb_14627 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39975 40127 . + . KQ414804.1 exonerate:protein2genome:local exon 39975 40127 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39975 40127 114 + . alignment_id 1 ; Query Lalb_14627 ; Align 39975 321 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 698 Query range: 4 -> 277 Target range: 299620 -> 300486 5 : MetArgAspArgSerAlaAspArgAlaAspAspCysPheAlaAsnSerAsnTyrLysS : 24 ||| !|||||||||..!..!!!!!.!|||! ! !!. !|||! !:!!|||:!!! MetTyrAspArgSerCysSerSerValAspGlyGlnLeuArgAsnTyrHisTyrGlnA 299621 : ATGTACGATCGATCCTGTAGCAGTGTTGACGGCCAATTGAGGAATTACCATTACCAAA : 299678 25 : erAspValAsnTyrThrLeuGluMetCysArgTrpValThrLysProIleGlyValTr : 43 :!|||:!!:!!|||||||||:!!||||||!:!|||:!! !||||||||||||||||| snAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTr 299679 : ATGACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATG : 299735 44 : pProPheValTyrSerArgThrSerLysLeuGluLysLeuMetSerIleValLeuLeu : 62 |! !!!.:!! !!..!|||:!!|||||||||||| ! |||:!:||||||||||||:!! pArgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMet 299736 : GCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATG : 299792 63 : ThrValCysPheSerAspLeuLeuPheSerIleIleProProGlyHisTyrValIleP : 82 |||:!!|||||||||..!|||!!!|||! !:!!:!:||| !!|||||||||:!!.!!| ThrIleCysPheSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePheP 299793 : ACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCT : 299852 83 : heValGluLysAsnValTyrValIleValLysLeuLeuCysProIleAlaPheGlySe : 101 ||!.!||||||!:!:!!:!!|||! ||||||:!!!!! !!|||:!!!.!||| !! heAlaGluLysSerIleHisValLysValLysValPheGlyProValGlyPheCysLe 299853 : TCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCT : 299909 102 : rSerSerAlaIleLysTyrLeuTyrLeuValPheLysGlyAsnValPheLysArgCys : 120 !|||||| !:!!||||||! !|||||| !.!.!!.|||..!!.!|||:!!|||||| uSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCys 299910 : CTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGC : 299966 121 : LeuValHisValGluArgAspTrpLysThrValValAspGlnArg--TyrArgArgIl : 139 :!! !||||||||||||||| ... |||##:!!|||! !|| IleGlnHisValGluArgAsp---UnkUnkUnkUnkUnkUnkArg##HisArgThrIl 299967 : ATCCAACACGTCGAGAGAGAC---NNNNNNNNNNNNNNNNTTCGAATCATCGTACGAT : 300022 140 : eMetValArgGlnSerSerValSerArgGlnLeuIleValLeuCysValIlePheLeu : 158 ||||:!!||| ! !!!!:!!||||||.!.|||! ..!:!!|||!.!:!:|||||| eMetLeuArgTyrValThrMetSerArgAsnLeuThrThrValCysAlaValPheLeu 300023 : CATGTTGAGATACGTGACTATGAGCAGAAATCTGACGACCGTGTGCGCCGTGTTTCTT : 300079 159 : TyrSerAlaGlyMetSerTyrGlnThrIleMetProPheValSerLysProLysMet{ : 178 |||:!!!.!||||||||||||!!.|||:!:|||! !|||:!!|||||| !!:!! { TyrAlaGlyGlyMetSerTyrHisThrValMetGlnPheLeuSerLysAspArgSer{ 300080 : TACGCAGGTGGTATGTCGTATCACACGGTGATGCAGTTCTTATCGAAGGACAGAAGC{ : 300139 179 : A} >>>> Target Intron 1 >>>> {rg}GlyAsnGlnThrLeuArgProLe : 186 |} 45 bp {||}! !||| ! |||! !!:!||||| A}+- +-{rg}GluAsnTyrThrTyrLysProLe 300140 : A}gc.........................aa{GG}GAGAATTACACTTACAAACCGTT : 300208 187 : uIleTyrProGlyTyrAspAlaPhePheAspSerGlnAlaSerProThrTyrGluIle : 205 | !||||||||||||||| !|||.!!|||!!!|||.!!|||||||||||||||||| uAlaTyrProGlyTyrAspTrpPheIleAspThrGlnThrSerProThrTyrGluIle 300209 : AGCCTATCCTGGCTACGATTGGTTTATCGATACACAAACCAGTCCTACCTACGAgatc : 300265 206 : IlePheSerMetLeuCysPheSerGlyPheIleArgTyrSerIleThrThrSerAlaT : 225 :::||| ... ||||||:!!!.!.!.|||! !|||!:!:!:||||||:!!|||| ValPhePhePheHisCysPheAlaAlaMetIleMetTyrAsnValThrThrAlaAlaT 300266 : gtatttttctttcactgttTCGCAGCGATGATCATGTACAACGTGACAACGGCAGCGT : 300325 226 : yrSerLeuAlaAlaThrPheValThrHisIleCysGlyGlnValGlnIleGlnIleAl : 244 ||||||||||||||! !||||||||||||||||||||||||:!!|||||||||!!:|| yrSerLeuAlaAlaIlePheValThrHisIleCysGlyGlnIleGlnIleGlnMetAl 300326 : ACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGACAGATTCAGATACAGATGGC : 300382 245 : aArgLeuGluAsnLeuAla<->AlaSerSerGlnArgAsnThrGlyArgAsnProVal : 262 ||||||||||:!!|||!.! !!!!.!!:!!!:!:!! !|||! !:!!|||:!! aArgLeuGluAspLeuValGluArgThrGlyGluLysAspAspGlyProAspProLeu 300383 : GAGATTGGAGGATCTGGTGGAGAGGACGGGAGAGAAGGACGACGGTCCTGATCCTTTG : 300439 263 : AlaIleIleValArgGluHisValGluIleLeuArgTyrAspArg : 277 !.!:!!|||||||||!!:||||||:!!:!!||||||!! !!:||| ValValIleValArgAspHisValLysValLeuArg***GluArg 300440 : GTCGTTATCGTTCGAGATCACGTGAAGGTTTTAAGGTAAGAGAGA : 300486 vulgar: Lalb_14621 4 277 . KQ414889.1 299620 300486 + 698 M 123 369 G 1 0 M 7 21 F 0 2 M 42 126 S 0 1 5 0 2 I 0 41 3 0 2 S 1 2 M 72 216 G 0 3 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299621 300486 698 + . gene_id 1 ; sequence Lalb_14621 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 299621 300139 . + . KQ414889.1 exonerate:protein2genome:local exon 299621 300139 . + . insertions 0 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local splice5 300140 300141 . + . intron_id 1 ; splice_site "GC" KQ414889.1 exonerate:protein2genome:local intron 300140 300184 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300183 300184 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 300185 300486 . + . KQ414889.1 exonerate:protein2genome:local exon 300185 300486 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299621 300486 698 + . alignment_id 1 ; Query Lalb_14621 ; Align 299621 5 369 ; Align 299990 129 21 ; Align 300013 136 126 ; Align 300187 179 216 ; Align 300406 251 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 626 Query range: 12 -> 276 Target range: 289690 -> 290488 13 : AlaAspAspCysPheAlaAsnSerAsnTyrLysSerAspValAsnTyrThrLeuGluM : 32 ::!..!||| !! :!!|||..!..!|||:!!!!!|||:!!..!||||||!!!|||: SerSerAspArgProSerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluL 289691 : AGCAGCGATCGTCCGTCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAAT : 289748 33 : etCysArgTrpValThrLysProIleGlyValTrpProPheValTyrSerArgThrSe : 51 !:|||!.!|||:!! !||||||||||||:!!!::|||||||||!:!||||||.!!|| euCysHisTrpIleLeuLysProIleGlyMetTyrProPheValPheSerArgAlaSe 289749 : TATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAG : 289805 52 : rLysLeuGluLysLeuMetSerIleValLeuLeuThrValCysPheSerAspLeuLeu : 70 |!:!! !|||::! ! !|||:!::!!|||:!! !||||||! !||| !|||! ! rArgArgGluArgThrAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGln 289806 : CAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAG : 289862 71 : PheSerIleIleProProGlyHisTyrValIlePheValGluLysAsnValTyrValI : 90 |||! !|||:!!||| !.!!|||:!!|||:!!||| !!!:!!.:!!:!! !!..!. PheIleIleValProPheSerHisHisValLeuPheSerAspAsnAspMetAsnThrP 289863 : TTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGT : 289922 91 : leValLysLeuLeuCysProIleAlaPheGlySerSerSerAlaIleLysTyrLeuTy : 109 !!|||||| !||| ! |||:!:.!!||| !!! !!!!!!! !.!!||||||! !|| heValLysAsnLeuGlyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTy 289923 : TCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTA : 289979 110 : rLeuValPheLysGlyAsnValPheLysArgCysLeuValHisValGluArgAspTrp : 128 |!!! !.!.||||||:::!.!.!! ||||||:!! !|||:!!|||||||||||| rPheSerMetLysGlySerAlaIleGlyArgCysValLysHisIleGluArgAspTrp 289980 : CTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGG : 290036 129 : LysThrValValAspGlnArgTyrArgArgIleMetValArgGlnSerSerValSerA : 148 |||! !:!! !|||:!! !:!!||| !||||||:!!||| ! !!!!:!!|||| LysMetLeuArgAspGluAspHisArgValIleMetLeuArgTyrValThrMetSerA 290037 : AAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCC : 290096 149 : rgGlnLeuIleValLeuCysValIlePheLeuTyrSerAlaGlyMetSerTyrGlnTh : 167 ||.!.|||||| !||||||!.!||||||||||||! !!.!|||:!!||||||.!.|| rgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnTh 290097 : GGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACAC : 290153 168 : rIleMetProPheValSerLysProLysMetArgGlyAsnGlnThrLeuArgProLeu : 186 |:!!!!:|||!!. !!|||||| !!..:!!!.!|||||| !|||:!!||||||||| rValIleProLeuPheSerLysLysSerValAsnGlyAsnValThrIleArgProLeu 290154 : TGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGGTAACGTGACTATCAGACCTCTA : 290210 187 : IleTyrProGlyTyrAspAlaPhePheAspSerGlnAlaSerProThrTyrGluIleI : 206 ! !||||||||||||!!:! !||||||||| !||| !||||||.!!|||||||||: ThrTyrProGlyTyrGluGluPhePheAspValGlnLysSerProAlaTyrGluIleV 290211 : ACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCG : 290270 207 : lePheSerMetLeuCysPheSerGlyPheIleArgTyrSerIleThrThrSerAlaTy : 225 !!|||!!!|||! !||| !!! !! !.!.|||! ! !:!||||||! !:!!||||| alPheCysMetHisCysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTy 290271 : TCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTA : 290327 226 : rSerLeuAlaAlaThrPheValThrHisIleCysGlyGlnValGlnIleGlnIleAla : 244 |||||||.!!.!!! !|||!.!||||||! !|||||||||:!!:!!||||||! .!! rSerLeuThrThrIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThr 290328 : CAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACG : 290384 245 : ArgLeuGluAsnLeuAlaAlaSerSerGln<-><->ArgAsnThrGlyArgAsnProV : 262 |||||||||:!!|||.!! !!!!.!!..! ..!!!. !! !!!!:!!! !: ArgLeuGluAspLeuThrLysArgGlyMetLeuLeuGluLysGlyValSerAspArgL 290385 : CGGCTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTT : 290444 263 : alAlaIleIleValArgGluHisValGluIleLeuArgTyrAsp : 276 !!|||:!!:!!|||!!!! |||||||||||||||!:!!! ||| euAlaValValValSerGlyHisValGluIleLeuLys***Asp 290445 : TGGCGGTTGTTGTGAGCGGTCACGTGGAGATCTTGAAGTAAGAT : 290488 vulgar: Lalb_14621 12 276 . KQ414889.1 289690 290488 + 626 M 242 726 G 0 6 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289691 290488 626 + . gene_id 2 ; sequence Lalb_14621 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289691 290488 . + . KQ414889.1 exonerate:protein2genome:local exon 289691 290488 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289691 290488 626 + . alignment_id 2 ; Query Lalb_14621 ; Align 289691 13 726 ; Align 290423 255 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 401 Query range: 22 -> 215 Target range: 294672 -> 295254 23 : LysSerAspValAsnTyrThrLeuGluMetCysArgTrpValThrLysProIleGlyV : 42 !:!!:!|||||| !!!:!|||:!! |||||| !!:!! !||||||||||||: ArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyL 294673 : AGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTC : 294730 43 : alTrpProPheValTyrSerArgThrSerLysLeuGluLysLeuMetSerIleValLe : 61 !!||||||.!!:!!||||||!.!||||||||||||.!.|||:!!:!:||||||:!!|| euTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLe 294731 : TTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCT : 294787 62 : uLeuThrValCysPheSerAspLeuLeuPheSerIleIleProProGlyHisTyrVal : 80 |:!!.!! !||| ! ! !:!!|||||| !:!!:!:||| !|||:!!!:! ! uIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCys 294788 : GATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGT : 294844 81 : IlePheValGluLysAsnValTyrValIleValLysLeuLeuCysProIleAlaPheG : 100 :!!||| !! ||||||||| ::: :!!||||||||| !!|||:!! !!:!. ValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrS 294845 : GTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACT : 294904 101 : lySerSerSerAlaIleLysTyrLeuTyrLeuValPheLysGlyAsnValPheLysAr : 119 .!! ! !||| !:!!!:!||| !! !||||||!!.||| ! !!.!||||||!. erMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHi 294905 : CTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCA : 294961 120 : gCysLeuValHisValGluArgAspTrpLysThrValValAspGlnArgTyrArgArg : 138 !|||:!!! ! !!:!!|||!.!||||||||| !:!!! !:!!! !..!:!!||| ! sCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAla 294962 : TTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCG : 295018 139 : IleMetValArgGlnSerSerValSerArgGlnLeuIleValLeuCysValIlePheL : 158 ||||||:!!!:!.!.:!!! !|||!!!!:!::!:!!! !||| !! !..!|||.!.: IleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleI 295019 : ATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAA : 295078 159 : euTyrSerAlaGlyMetSerTyrGlnThrIleMetProPheValSerLysPro<->Ly : 176 !!||||||:!!!.!:!!||||||!!..!!|||:::|||||| |||... :! leTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGl 295079 : TCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGA : 295135 177 : sMetArgGlyAsnGlnThrLeuArgProLeuIleTyrProGlyTyrAspAlaPhePhe : 195 !! !:! !|||.!.|||:!!||| !!||| ! !|||||||||!!: !||| ! uAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheVal 295136 : GAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTA : 295192 196 : AspSerGlnAlaSerProThrTyrGluIleIlePheSerMetLeuCysPheSerGlyP : 215 |||:!! ! :!!||||||||||||||||||||| !!! |||! ! !!! !..!| AspAlaTyrSerSerProThrTyrGluIleIleArgThrHisLeuPheValTyrSerP 295193 : GACGCTTATTCCAGTCCTACCTACGAGATCATAAGAACTCATCTCTTTGTTTACTCGT : 295252 216 : he : 215 || he 295253 : TC : 295254 vulgar: Lalb_14621 22 215 . KQ414889.1 294672 295254 + 401 M 153 459 G 0 3 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294673 295254 401 + . gene_id 3 ; sequence Lalb_14621 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294673 295254 . + . KQ414889.1 exonerate:protein2genome:local exon 294673 295254 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294673 295254 401 + . alignment_id 3 ; Query Lalb_14621 ; Align 294673 23 459 ; Align 295135 176 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 396 Query range: 20 -> 287 Target range: 221357 -> 222167 21 : AsnTyrLysSerAspValAsnTyrThrLeuGluMetCysArgTrpValThrLysProI : 40 :!!||||||!!!:!!|||!!.! !:!:!!:!!:!! !!||||||:!! !||||||| AspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProI 221358 : GATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGA : 221415 41 : leGlyValTrpProPheValTyrSerArgThrSerLysLeuGluLysLeuMetSerIl : 59 |||||||||||||| !! :!!!.!! !|||! !:!!|||!:!! !:!:! ! leGlyValTrpPro---AsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTr 221416 : TCGGTGTTTGGCCA---AATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTG : 221469 60 : eValLeuLeuThrValCysPheSerAspLeuLeuPheSerIleIleProProGlyHis : 78 :!!:!! !..!||||||!:!||| :!! !||| !:!::!!||| !.!!! ! pLeuIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeu 221470 : GCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTT : 221526 79 : TyrValIlePheValGluLysAsnValTyrValIleValLysLeuLeuCysProIleA : 98 |||||||||.!!! !! !:!!:!!|||||| !! !:!!||||||||| !!|||:!:: TyrValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuS 221527 : TACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGA : 221586 99 : laPheGlySerSerSerAlaIleLysTyrLeuTyrLeuValPheLysGlyAsnValPh : 117 :!||| !! !! !:!! !:!!||||||! ! |||:!!.!! ! ! !|||! !.! erPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIl 221587 : GTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACAT : 221643 118 : eLysArgCysLeuValHisValGluArgAspTrpLysThrValValAspGlnArgTyr : 136 !:::..!|||:!!! !!.!:!!||| !!|||||||||!.!:!!..! !!...!:! !! eArgGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAsp 221644 : CCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGAT : 221700 137 : ArgArgIleMetValArgGlnSerSerValSerArgGlnLeuIleValLeuCysValI : 156 !:! !||||||:!!..!.!.:!!! ! !!.!!|||!:!||||||:!!:!!|||..!. LysAspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrP 221701 : AAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACAT : 221760 157 : lePheLeuTyrSerAlaGlyMetSerTyrGlnThrIleMetProPhe<->ValSerLy : 174 !!|||:!!||||||... ::: ||| ! !!!:|||||| |||.!!|| hePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLy 221761 : TTTTCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAA : 221817 175 : s<->ProLysMetArgGlyAsnGlnThrLeuArgProLeuIleTyrProGlyTyrAsp : 192 | ||| !..! ! ||| |||... |||:!!:!:!:!||| !! sIleProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArg 221818 : AATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGA : 221874 193 : AlaPhePheAspSerGlnAlaSerProThrTyrGluIleIlePheSerMetLeuCysP : 212 !.!! !!|||!!!!:! !||||||..! !!||||||:!:||||||:!:! ! !. PheIleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleM 221875 : TTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTA : 221934 213 : heSerGlyPheIleArgTyrSerIleThrThrSerAlaTyrSerLeuAlaAlaThrPh : 231 !.:!!||| !:!:! !:!!|||||||||:!!:!!|||! !||||||!.!|||! !|| etAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPh 221935 : TGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTT : 221991 232 : eValThrHisIleCysGlyGlnValGlnIleGlnIleAlaArgLeuGluAsnLeu<-> : 250 |!.!..!||| !|||||||||:!!|||:!: !!!:::! !!|||:!!:!!||| eAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIle 221992 : TGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATC : 222048 251 : <->AlaAlaSerSerGlnArgAsnThrGlyArgAsnProValAlaIleIleValArgG : 268 !.! !:!!..!..! !!|||!.!! ! !!.. !:!!|||! ||||||!.!: AsnGlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnG 222049 : AACGGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATC : 222108 269 : luHisValGluIleLeuArgTyrAspArgGluAlaTrpLysLysLysPhePheLeuGl : 287 !!||||||..!||||||!:!|||! ||| ! ! ::: ...||||||:::|| lnHisValArgIleLeuGlnTyrValArgCysIleGlyArgGlyAsnPhePheValGl 222109 : AACACGTTCGAATATTGCAGTATGTACGTTGTATCGGCCGtgggaattttttcgttgG : 222165 288 : y : 287 | y 222166 : A : 222167 vulgar: Lalb_14621 20 287 . KQ414889.1 221357 222167 + 396 M 24 72 G 1 0 M 126 378 G 0 3 M 3 9 G 0 3 M 75 225 G 0 6 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221358 222167 396 + . gene_id 4 ; sequence Lalb_14621 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221358 222167 . + . KQ414889.1 exonerate:protein2genome:local exon 221358 222167 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221358 222167 396 + . alignment_id 4 ; Query Lalb_14621 ; Align 221358 21 72 ; Align 221430 46 378 ; Align 221811 172 9 ; Align 221823 175 225 ; Align 222054 250 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 364 Query range: 18 -> 274 Target range: 303169 -> 304869 19 : AsnSerAsnTyrLysSerAspValAsnTyrThrLeuGluMetCysArgTrpValThrL : 38 |||! !|||||||||!.!|||:!! !|||..! !:!! !!!:!|||:!! !| AsnLeuAsnTyrLysLysAspIleValTyrValThrLysHisSerLysTrpIleLeuL 303170 : AATTTGAATTACAAGAAAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCCTGA : 303227 39 : ysProIleGlyValTrpProPheValTyrSerArgThrSerLysLeuGluLysLeuMe : 57 || !!:!!|||:!!|||||| !|||! ..!..!|||:!! !!!! ! ! !!! ysSerLeuGlyIleTrpProAlaValLeuAspGluThrAlaGlyPheLeuProLysIl 303228 : AGTCCCTTGGTATTTGGCCAGCCGTGTTGGACGAAACCGCAGGATTCCTACCAAAAAT : 303284 58 : tSerIleValLeuLeuThrValCysPheSerAspLeuLeuPheSerIleIleProPro : 76 :!!!|||! !||| !!.!:!! ! |||||||||!!!:!:|||||| ! eThrIleGlyLeuSerAsnLeuVal---------LeuLeuPheThrValIleProCys 303285 : CACCATTGGACTCAGTAATTTGGTT---------CTATTATTCACCGTGATACCGTGT : 303332 77 : GlyHisTyrValIlePheValGluLysAsnValTyrValIleValLysLeuLeuCysP : 96 !! :!!:!!||||||! !:!!|||:!!..! :!!! !:!!||||||!!! !!! IleLeuHisIleIlePheGluGlnLysAspThrIleIleArgLeuLysLeuPheGlyL 303333 : ATTCTACACATAATATTCGAACAAAAGGATACGATAATAAGATTGAAACTATTCGGTC : 303392 97 : roIleAlaPheGlySerSerSerAlaIleLysTyrLeuTyrLeuValPheLysGlyAs : 115 !:!:::!||| !!! !! !||| !!!:||||||! ! !|||!.! ::! ! euLeuSerPheCysLeuIleSerLeuMetLysTyrTrpAlaLeuAlaThrArgLysPr 303393 : TGCTGAGTTTCTGTTTGATCTCGTTGATGAAGTATTGGGCCCTCGCCACGCGGAAACC : 303449 116 : nValPheLysArgCysLeu{V} >>>> Target Intron 1 >>>> {al}His : 123 !.!!|||..!|||:!!{!} 938 bp { !} !! oArgIleLysGluCysIle{G}-- ++{ly}Asp 303450 : AAGGATCAAAGAATGTATA{G}aa.........................ag{GG}GAT : 304411 124 : ValGluArgAspTrpLysThrValValAspGlnArgTyrArgArgIleMetValArgG : 143 :!!...! !! !:::!! !|||! !..!! ||| !!|||..!!!:|||:!!!:! LeuSerThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysT 304412 : CTCTCTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAAT : 304471 144 : lnSerSerValSerArgGlnLeuIleValLeuCysValIlePheLeuTyrSerAlaGl : 162 ! .!!..!:!!.!!|||.!.|||! :!!:!!|||!.!||||||:!!|||!!!!.!|| yrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGl 304472 : ACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGG : 304528 163 : yMetSerTyrGlnThrIleMetProPheValSerLysProLysMet<->ArgGlyAsn : 180 |! ! !|||!!.|||:!!|||! !|||!.!!!! ! !! ! :!! ..! !||| yThrIleTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsn 304529 : CACCATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAAT : 304585 181 : GlnThrLeuArgProLeuIleTyrProGlyTyrAspAlaPhePheAspSerGlnAlaS : 200 !::|||:!!!:!||||||:!!|||||| !|||..!|||!!.|||||| !|||.!!| ArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrS 304586 : CGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAA : 304645 201 : erProThrTyrGluIleIlePheSerMetLeuCysPheSerGlyPheIleArgTyrSe : 219 |||||! !||||||:!::!!!:!! !:!:! !|||.!.!!!|||!:!:!!! !||||| erProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSe 304646 : GCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTC : 304702 220 : rIleThrThrSerAlaTyrSerLeuAlaAlaThrPheValThrHisIleCysGlyGln : 238 |||||||.!!.!!|||! !.!!||||||||| !|||!.!|||||| !||||||||| rIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGln 304703 : TATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAA : 304759 239 : ValGlnIleGlnIleAlaArgLeuGluAsnLeuAlaAlaSerSerGlnArgAsnThrG : 258 :!!.!.||| !!::!!||||||! :!!|||!.! !|||!.!:!! !::! ! IleAspIleValMetSerArgLeuGlyAspLeuValAsnSerLysGluSerSerAspL 304760 : ATTGATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCATCTGATT : 304819 259 : lyArgAsnProValAlaIleIleValArgGluHisValGluIleLeuArg : 274 ! !!!.! !:!! ! !||||||..!.!.|||:!!..!||||||||| euAspLysArgLeuIleGluIleValGluHisHisLeuArgIleLeuArg 304820 : TAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTAAGG : 304869 vulgar: Lalb_14621 18 274 . KQ414889.1 303169 304869 + 364 M 47 141 G 3 0 M 53 159 S 0 1 5 0 2 I 0 934 3 0 2 S 1 2 M 55 165 G 0 3 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303170 304869 364 + . gene_id 5 ; sequence Lalb_14621 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303170 303470 . + . KQ414889.1 exonerate:protein2genome:local exon 303170 303470 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 303471 303472 . + . intron_id 1 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local intron 303471 304408 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304407 304408 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304409 304869 . + . KQ414889.1 exonerate:protein2genome:local exon 304409 304869 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303170 304869 364 + . alignment_id 5 ; Query Lalb_14621 ; Align 303170 19 141 ; Align 303311 69 159 ; Align 304411 123 165 ; Align 304579 178 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 332 Query range: 17 -> 249 Target range: 284493 -> 285201 18 : AlaAsnSerAsnTyrLysSerAspValAsnTyrThrLeuGluMetCysArgTrpValT : 37 .!!:!!|||!..!:: ! !!!||| !! |||!:!:!!:!!||| !|||||| !! ThrAspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheL 284494 : ACCGATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTC : 284551 38 : hrLysProIleGlyValTrpProPheValTyrSerArgThrSerLysLeuGluLysLe : 56 !|||||||||||||||||||||.!! ! !!!! !|||!!! |||||||||:! euLysProIleGlyValTrpProLeuSerLeuCysValThrThr---LeuGluLysIl 284552 : TCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACC---TTGGAAAAGAT : 284605 57 : uMetSerIleValLeuLeuThrValCysPheSerAspLeuLeuPheSerIleIlePro : 75 !! |||:!:|||||| ! !:!! !!! !! ! :!! !||| !:!::!!||| eSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValPro 284606 : CAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCG : 284662 76 : ProGlyHisTyrValIlePheValGluLys<->AsnValTyrValIleValLysLeuL : 94 !!.!! ! !..!:!:.!!! !:!!! :!!:!! !!..!! :!!|||:!!: CysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetI 284663 : TGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGA : 284722 95 : euCysProIleAlaPheGlySerSerSerAlaIleLysTyrLeuTyrLeuValPheLy : 113 !! !!|||:!:::!||| !!! !! !:!!||||||||||||! ! !|||:!!! :: leGlyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerAr 284723 : TCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCG : 284779 114 : sGlyAsnValPheLysArgCysLeuValHisValGluArgAspTrpLysThrValVal : 132 :|||..! !.!! !:!|||:!! ! !!:!!... !||||||... !..!:!! gGlyGlyLysIleGlyGlnCysValLysAspIleArgAlaAspTrpSerLeuThrLeu 284780 : CGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTT : 284836 133 : <-><-><->AspGlnArgTyrArgArgIleMetValArgGlnSerSerValSerArgG : 149 ...:::... |||...|||||| ! !...:!!!!!:!!.!!|||. SerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgS 284837 : TCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGAT : 284896 150 : lnLeuIleValLeuCysValIlePheLeuTyrSerAlaGlyMetSerTyrGlnThrIl : 168 ..||| :!!!!!|||!.! !|||:!!||||||!.!|||.!.! !||| |||:! erLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrVa 284897 : CTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGT : 284953 169 : eMetProPheValSer<->LysProLysMetArgGlyAsnGlnThrLeuArgProLeu : 186 :||||||!!. !!!! ::: !!:!!!!:! !! !|||:!!|||:!!||| !!! ! lMetProLeuCysThrValArgThrGluIleIleAspAsnGluThrValArgSerGln 284954 : GATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAA : 285010 187 : IleTyrProGlyTyrAspAlaPhePheAspSerGlnAlaSerProThrTyrGluIleI : 206 !:!||| !||| !!.!.!!.!!||| !!!::.!!||||||:!!!:!||||||: AlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleV 285011 : GCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCG : 285070 207 : lePheSerMetLeuCysPheSerGlyPheIleArgTyrSerIleThrThrSerAlaTy : 225 !: ! !|||! !|||!!.:!!!.!|||:!!! !||||||:!!|||..!.!!|||! alGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCy 285071 : TGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTG : 285127 226 : rSerLeuAlaAlaThrPheValThrHisIleCysGlyGlnValGlnIleGlnIleAla : 244 !||||||||||||..!||||||! !|||:!!||||||||| !!::!|||! :!:.!! sSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThr 285128 : CAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACA : 285184 245 : ArgLeuGluAsnLeu : 249 !:!|||!!:!!.||| LysLeuAspLysLeu 285185 : AAGCTGGATAAGCTC : 285201 vulgar: Lalb_14621 17 249 . KQ414889.1 284493 285201 + 332 M 34 102 G 1 0 M 33 99 G 0 3 M 47 141 G 0 9 M 41 123 G 0 3 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284494 285201 332 + . gene_id 6 ; sequence Lalb_14621 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284494 285201 . + . KQ414889.1 exonerate:protein2genome:local exon 284494 285201 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284494 285201 332 + . alignment_id 6 ; Query Lalb_14621 ; Align 284494 18 102 ; Align 284596 53 99 ; Align 284698 86 141 ; Align 284848 133 123 ; Align 284974 174 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 331 Query range: 16 -> 249 Target range: 208179 -> 208881 17 : PheAlaAsnSerAsnTyrLysSerAspValAsnTyrThrLeuGluMetCysArgTrpV : 36 ||| !|||!!!|||||||||!:!|||:!!!:!!:!!.!:!!...:!! ! !|||. PheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpT 208180 : TTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGA : 208237 37 : alThrLysProIleGlyValTrpProPheValTyrSerArgThrSerLysLeuGluLy : 55 .! !||| !|||||| !|||||| ! ..!||| ||| !||||||!! hrLeuLysIleIleGlySerTrpProArgSerIleAspArg---SerTrpLeuGluAs 208238 : CGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGT---TCCTGGTTAGAGAA : 208291 56 : sLeuMetSerIleValLeuLeuThrValCysPheSerAspLeuLeuPheSerIleIle : 74 . !..! !|||:!!||| !..!:!! !! !!!! ||| !|||! !:!:||| nSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIle 208292 : CAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATA : 208348 75 : ProProGlyHisTyrValIlePheValGluLysAsnValTyrValIleValLysLeuL : 94 ||| !!||| !:!!.!|||.!!|||! :!!:!! !!|||! ! !:!!|||:!!! ProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleC 208349 : CCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCT : 208408 95 : euCysProIleAlaPheGlySerSerSerAlaIleLysTyrLeuTyrLeuValPheLy : 113 ! !! !!:!:::!||| !! !! !:!! !! ||||||:!! !:!!..! !!:: ysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValAr 208409 : GTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCG : 208465 114 : sGlyAsnValPheLysArgCysLeuValHisValGluArgAspTrpLysThrValVal : 132 :! !..!! !.!.::!!:!|||:!!! !:!!|||||| !||||||!:!!.!|||! ! gGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGlu 208466 : CGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAG : 208522 133 : AspGlnArgTyrArgArgIleMetValArgGlnSerSerValSerArgGlnLeuIleV : 152 !!:!!..! !!|||!:!||||||:!! !.!.:!!||| !!:!!|||:!!||||||| HisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleV 208523 : CACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCG : 208582 153 : alLeuCysValIlePheLeuTyrSerAlaGlyMetSerTyrGlnThrIleMetProPh : 171 ||:!!|||! ! !|||:!!|||.!!!.. ::: ||| ! !:!!|||.! alIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLe 208583 : TGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCT : 208639 172 : eValSerLysProLysMetArg<-><->GlyAsnGlnThrLeuArgProLeuIleTyr : 188 !..! !! ! ! :!:..! |||||| !|||! !||| !|||:!!||| uThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyr 208640 : CACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTAT : 208696 189 : ProGlyTyrAspAlaPhePheAspSerGlnAlaSerProThrTyrGluIleIlePheS : 208 |||! ! ! ! !.!!.!.||| !!:! !||||||..! !!||||||.!!!:!! ProValProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrT 208697 : CCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATA : 208756 209 : erMetLeuCysPheSerGlyPheIleArgTyrSerIleThrThrSerAlaTyrSerLe : 227 !!:!:! !! !!.|||||||||:!! !:!!!:!||||||..!.!!|||! !.!!|| hrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLe 208757 : CGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTT : 208813 228 : uAlaAlaThrPheValThrHisIleCysGlyGlnValGlnIleGlnIleAlaArgLeu : 246 ||||||| !.!!!.!! !||| |||||||||:!!|||||| !!!::!! !!:!! uAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMet 208814 : GGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATG : 208870 247 : GluAsnLeu : 249 |||!!.||| GluLysLeu 208871 : GAGAAGTTG : 208881 vulgar: Lalb_14621 16 249 . KQ414889.1 208179 208881 + 331 M 33 99 G 1 0 M 128 384 G 0 6 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208180 208881 331 + . gene_id 7 ; sequence Lalb_14621 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208180 208881 . + . KQ414889.1 exonerate:protein2genome:local exon 208180 208881 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208180 208881 331 + . alignment_id 7 ; Query Lalb_14621 ; Align 208180 17 99 ; Align 208279 51 384 ; Align 208669 179 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 331 Query range: 20 -> 274 Target range: 217153 -> 217924 21 : AsnTyrLysSerAspValAsnTyrThrLeuGluMetCysArgTrpValThrLysProI : 40 .!.|||:::...::::::||| ::!:!!:!! ! !||||||:!! !||||||! GluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProM 217154 : GAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGA : 217211 41 : leGlyValTrpProPheValTyrSerArgThrSerLysLeuGluLysLeuMetSerIl : 59 !:|||:!!|||||| ! ! !!!! |||!!!!:!! !..!|||:!!:!:! !! etGlyLeuTrpProAsnSerArgThr---ThrThrArgSerArgLysIleLeuTyrLy 217212 : TGGGTCTTTGGCCAAACTCACGTACC---ACCACCAGATCCCGAAAAATCCTCTACAA : 217265 60 : eValLeuLeuThrValCysPheSerAspLeuLeuPheSerIleIleProProGlyHis : 78 !:!!:!! !.!!:!!|||!:!.!! :!! !||| !.!!:!!||| !..! sLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMet 217266 : ACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATG : 217322 79 : TyrValIlePheValGluLysAsnValTyrValIleValLysLeuLeuCysProIleA : 98 ||||||.!!.!!! !! :!!:!!:!!|||! !! :!!||||||!!! !!|||:!: TyrValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuI 217323 : TACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGA : 217382 99 : laPheGlySerSerSerAlaIleLysTyrLeuTyrLeuValPheLysGlyAsnValPh : 117 !||| !! !! !:!! !:!!||||||! !! !|||:!! !! ! ! ! !.! lePheCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIl 217383 : TCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACAT : 217439 118 : eLysArgCysLeuValHisValGluArgAspTrpLysThrValValAspGlnArgTyr : 136 !:::..!|||:!! !...:!!||||||||||||!:!!.!||| ! !:!!!:! !! eArgGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAsp 217440 : TCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGAC : 217496 137 : ArgArgIleMetValArgGlnSerSerValSerArgGlnLeuIleValLeuCysValI : 156 |||..! |||:!! !.!.:!!!:! !!.!!|||:!!|||:!!:!!||||||..!. ArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrP 217497 : AGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCT : 217556 157 : lePheLeuTyrSerAlaGlyMetSerTyrGlnThrIleMetProPhe<->ValSerLy : 174 !!|||:!!||||||... ::: ||| ! !!!:|||.!! |||.!!!: hePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyAr 217557 : TCTTCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAG : 217613 175 : s<->ProLysMetArgGlyAsnGlnThrLeuArgProLeuIleTyrProGlyTyrAsp : 192 ! ! !..! !!.!||||||! |||!!!! !||||||:!:!:!||| ! ! gIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLys 217614 : AATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAG : 217670 193 : AlaPhePheAspSerGlnAlaSerProThrTyrGluIleIlePheSerMetLeuCysP : 212 !.!!.!!|||!!!!:: !!!!|||||| !!||||||:!:|||! !:!:! !! . TyrIleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuI 217671 : TATATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGA : 217730 213 : heSerGlyPheIleArgTyrSerIleThrThrSerAlaTyrSerLeuAlaAlaThrPh : 231 !!:!!||| !:!:! !:!!.!!||||||:!!:!!|||! !||||||||||||.!!|| leAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPh 217731 : TCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTT : 217787 232 : eValThrHisIleCysGlyGlnValGlnIleGlnIleAlaArgLeuGluAsnLeu<-> : 250 |!.!..!||| !|||||||||:!!:!!:!: !!!: ! !!|||:!!:!!||| eAlaValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIle 217788 : CGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATC : 217844 251 : <->AlaAlaSerSerGlnArgAsnThrGlyArgAsnProValAlaIleIleValArgG : 268 !.! !:!!..!..!!!!:!!|||! ! !..! !:!!|||! !||||||!!!: AspGlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerG 217845 : GACGGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTC : 217904 269 : luHisValGluIleLeuArg : 274 !!||||||..!||||||!:! lnHisValArgIleLeuLys 217905 : AACACGTTCGGATATTAAAG : 217924 vulgar: Lalb_14621 20 274 . KQ414889.1 217153 217924 + 331 M 28 84 G 1 0 M 122 366 G 0 3 M 3 9 G 0 3 M 75 225 G 0 6 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217154 217924 331 + . gene_id 8 ; sequence Lalb_14621 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217154 217924 . + . KQ414889.1 exonerate:protein2genome:local exon 217154 217924 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217154 217924 331 + . alignment_id 8 ; Query Lalb_14621 ; Align 217154 21 84 ; Align 217238 50 366 ; Align 217607 172 9 ; Align 217619 175 225 ; Align 217850 250 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 321 Query range: 18 -> 274 Target range: 266610 -> 267390 19 : AsnSerAsnTyrLysSerAspValAsnTyrThrLeuGluMetCysArgTrpValThrL : 38 .!.:!!||| !!.||| !:!!|||!:!|||:!!:!! !|||||| !! !| GluAlaAsnLeuAsnSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuL 266611 : GAAGCGAATCTAAACAGTCTGAGCGATTACAGCCTGCAATTGAATCGATGGTTCCTGA : 266668 39 : ysProIleGlyValTrpProPheValTyrSerArgThrSerLysLeuGluLysLeuMe : 57 |||||||||||!.!|||||| !! |||! !|||||||||||||||::!:!!:! ysProIleGlyAlaTrpPro---ProLeuSerLeuThrSerLysLeuGluArgIleVa 266669 : AACCTATAGGCGCTTGGCCG---CCGTTGTCACTCACATCTAAACTCGAACGAATCGT : 266722 58 : tSerIleValLeuLeuThrValCysPheSerAspLeuLeuPheSerIleIleProPro : 76 :||| !!.!|||:!!..!:!!|||!:!!!!..!:!!||||||!!!:!!|||||| ! lSerTyrAlaLeuIleValIleCysTyrCysSerIleLeuPheThrValIleProCys 266723 : TTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATACTGTTCACCGTAATCCCTTGC : 266779 77 : GlyHisTyrValIlePheValGluLysAsnValTyrValIleValLysLeuLeuCysP : 96 ! !:!!:!!:!!.!.! !!!::!!!:!:!! !..!! !||||||:!!!!! !!| LeuPheHisLeuValLeuGluAspGluSerIleArgThrLysValLysValPheGlyP 266780 : TTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTACGAAAGTGAAGGTGTTCGGTC : 266839 97 : roIleAlaPheGlySerSerSerAlaIleLysTyrLeuTyrLeuValPheLysGlyAs : 115 ||:!:::! ! !!! ! !.!!!.!|||!!.||| ! |||:!!.!.:::.!!!! roLeuSerHisTrpPheValGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLy 266840 : CTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACACCACACTGTTGCTACGCAGCAA : 266896 116 : nValPheLysArgCysLeuValHisValGluArgAspTrpLysThrValValAspGln : 134 .! !.!.::: !!|||:!!! !|||:!!:!!! !||||||!:!! !|||..! ! ! sGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgPro 266897 : AGAGATACGCGGTTGCGTAGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCG : 266953 135 : ArgTyrArgArgIleMetValArgGlnSerSerValSerArgGlnLeuIleValLeuC : 154 ..! !!!:!!:!:!:|||:!!!:!.!.:!!!!!:!!.!!||| ! :!! !:!!!!!| GluAspLysGlnValMetLeuLysAsnAlaArgIleGlyArgTyrIleAlaIlePheC 266954 : GAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCGGTCGTTACATTGCTATATTCT : 267013 155 : ysValIlePheLeuTyrSerAlaGlyMetSerTyrGlnThrIleMetProPheValSe : 173 ||!.! |||:!! ! !!!!.!! !:!:.!!||| ..!|||! ! !!|||..!! ysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCysValIleThrAlaPheThrMe 267014 : GCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGTGATAACGGCGTTCACTAT : 267070 174 : rLysProLysMetArgGlyAsnGlnThrLeuArgProLeuIleTyrPro<-><->Gly : 190 !:!! !! ! !||||||:!!||| !! ! !! !:!:! ||| ! ! tGlnThrValGluValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaVal 267071 : GCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTACATCTGTTGCCCTGTGCAGTT : 267127 191 : TyrAspAlaPhePheAspSerGlnAlaSerProThrTyrGluIleIlePheSerMetL : 210 ||| ! !.!..!!! !.!..!!||||||||| !!||||||:!!.!! ! ! TyrLysLysMetIleAlaValAspThrSerProThrAsnGluIleValLeuValSerG 267128 : TACAAGAAGATGATCGCAGTTGATACCAGCCCGACGAACGAGATTGTCCTTGTTTCAC : 267187 211 : euCysPheSerGlyPheIleArgTyrSerIleThrThrSerAlaTyrSerLeuAlaAl : 229 !! ! ! |||||||||||| ! !!|||! !..!..!.!!|||!:!||||||||||| lnPheValSerGlyPheIleValAsnSerSerValValGlyAlaPheSerLeuAlaAl 267188 : AGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGC : 267244 230 : aThrPheValThrHisIleCysGlyGlnValGlnIle<-><-><->GlnIleAlaArg : 245 |..!|||!.!.!!||| |||||||||:!!...:!: !||| !..! aValPheAlaAlaHisAlaCysGlyGlnLeuSerValLeuMetMetTrpIleLysGlu 267245 : CGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTGATGATGTGGATCAAGGAG : 267301 246 : LeuGluAsnLeuAlaAlaSerSerGlnArgAsnThrGlyArgAsnProValAlaIleI : 265 !!!! !|||! !:!! !..!|||.!.!:!|||..! !! !:!! !:!!!.!:!:: PheValAsnArgSerArgAspSerAsnLysAsnValCysPheAspLysIleGlyValV 267302 : TTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTTGCTTCGATAAGATTGGCGTGG : 267361 266 : leValArgGluHisValGluIleLeuArg : 274 !!|||..!.!.|||:!!..!:!!|||||| alValGluHisHisLeuArgValLeuArg 267362 : TCGTTGAACATCATCTGAGAGTTTTGAGG : 267390 vulgar: Lalb_14621 18 274 . KQ414889.1 266610 267390 + 321 M 26 78 G 1 0 M 144 432 G 0 6 M 52 156 G 0 9 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266611 267390 321 + . gene_id 9 ; sequence Lalb_14621 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266611 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266611 267390 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 266611 267390 321 + . alignment_id 9 ; Query Lalb_14621 ; Align 266611 19 78 ; Align 266689 46 432 ; Align 267127 190 156 ; Align 267292 242 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 318 Query range: 17 -> 249 Target range: 278546 -> 279254 18 : AlaAsnSerAsnTyrLysSerAspValAsnTyrThrLeuGluMetCysArgTrpValT : 37 .!!:!!|||!..!::!!.!!!||| !! |||!:!:!!:!!||| !|||||| !! ThrAspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheL 278547 : ACCGATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTC : 278604 38 : hrLysProIleGlyValTrpProPheValTyrSerArgThrSerLysLeuGluLysLe : 56 !|||||||||||||||||||||.!! ! !!!! !|||!!! |||||||||:! euLysProIleGlyValTrpProLeuSerLeuCysValThrThr---LeuGluLysIl 278605 : TCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACC---TTGGAAAAGAT : 278658 57 : uMetSerIleValLeuLeuThrValCysPheSerAspLeuLeuPheSerIleIlePro : 75 !! |||:!:|||||| ! !:!! !!! !! ! :!! !||| !:!::!!||| eSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValPro 278659 : CAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCG : 278715 76 : ProGlyHisTyrValIlePheValGluLys<->AsnValTyrValIleValLysLeuL : 94 !!.!! ! !..!:!:.!!! !:!!! :!!:!! !!..!! :!!|||:!!: CysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetI 278716 : TGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGA : 278775 95 : euCysProIleAlaPheGlySerSerSerAlaIleLysTyrLeuTyrLeuValPheLy : 113 !! !!|||:!!::!||| !!!!!! !:!!.!!|||||||||! ! !|||:!!! :: leGlyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerAr 278776 : TCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCG : 278832 114 : sGlyAsnValPheLysArgCysLeuValHisValGluArgAspTrpLysThrValVal : 132 :|||..! !.!! !:!|||:!! ! !!:!!...! !||||||... !..!:!! gGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeu 278833 : CGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTT : 278889 133 : AspGlnArgTyr<-><-><->ArgArgIleMetValArgGlnSerSerValSerArgG : 149 ... ! ||| |||...|||||| ! !...:!!!!!:!!.!!|||. SerTyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgS 278890 : TCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGAT : 278949 150 : lnLeuIleValLeuCysValIlePheLeuTyrSerAlaGlyMetSerTyrGlnThrIl : 168 ..||| :!!!!! !!!.! !|||:!!||||||!.!|||:!:! !||| .!!:! erLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaVa 278950 : CTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGT : 279006 169 : eMetPro<->PheValSerLysProLysMetArgGlyAsnGlnThrLeuArgProLeu : 186 :|||||| |||!.! !::: !!:!!!!:! !! !|||:!!|||:!!||| !!! ! lMetProLeuPheAlaValArgThrGluIleIleAspAsnGluThrValArgSerGln 279007 : GATGCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAA : 279063 187 : IleTyrProGlyTyrAspAlaPhePheAspSerGlnAlaSerProThrTyrGluIleI : 206 !:!||| !||| !!.!.!!.!!||| !!!::.!!||||||:!!!:!||||||: AlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleV 279064 : GCGTTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCG : 279123 207 : lePheSerMetLeuCysPheSerGlyPheIleArgTyrSerIleThrThrSerAlaTy : 225 !: ! !|||! !|||!!.:!!!.!|||:!! !||||||:!!|||..!.!!|||! alGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCy 279124 : TGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTG : 279180 226 : rSerLeuAlaAlaThrPheValThrHisIleCysGlyGlnValGlnIleGlnIleAla : 244 !|||||| !|||..!||||||! !|||:!!||||||||| !!::!|||! :!:.!! sSerLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThr 279181 : CAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACA : 279237 245 : ArgLeuGluAsnLeu : 249 !:!|||!!:!!.||| LysLeuAspLysLeu 279238 : AAGCTGGATAAGCTC : 279254 vulgar: Lalb_14621 17 249 . KQ414889.1 278546 279254 + 318 M 34 102 G 1 0 M 33 99 G 0 3 M 51 153 G 0 9 M 34 102 G 0 3 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278547 279254 318 + . gene_id 10 ; sequence Lalb_14621 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278547 279254 . + . KQ414889.1 exonerate:protein2genome:local exon 278547 279254 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278547 279254 318 + . alignment_id 10 ; Query Lalb_14621 ; Align 278547 18 102 ; Align 278649 53 99 ; Align 278751 86 153 ; Align 278913 137 102 ; Align 279018 171 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 314 Query range: 17 -> 274 Target range: 274353 -> 275136 18 : AlaAsnSerAsnTyrLysSerAspValAsnTyrThrLeuGluMetCysArgTrpValT : 37 !.!!.!:!!|||!:! ! ||| ! !:!!|||!:!|||:!!:!! !|||||| !! ValThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheL 274354 : GTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCT : 274411 38 : hrLysProIleGlyValTrpProPheValTyrSerArgThrSerLysLeuGluLysLe : 56 !||||||||||||!.!||||||!!.!.! |||! !|||!!!|||!!!|||::!:! euLysProIleGlyAlaTrpProLeuAla---SerProThrThrLysPheGluArgIl 274412 : TGAAGCCTATAGGCGCGTGGCCGTTAGCC---TCGCCCACCACGAAATTCGAACGAAT : 274465 57 : uMetSerIleValLeuLeuThrValCysPheSerAspLeuLeuPheSerIleIlePro : 75 !:!:||| !:::|||::: :::|||::!!!! !:!!|||! !!!!:!!|||||| eLeuSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIlePro 274466 : CCTTTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCA : 274522 76 : ProGlyHisTyrValIlePheValGluLysAsnValTyrValIleValLysLeuLeuC : 95 ! ! !:!!:!!|||.!.|||!!::!!!:!:!!:!!:!!! :!!||||||||| SerIlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuG 274523 : AGCATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCG : 274582 96 : ysProIleAlaPheGlySerSerSerAlaIleLysTyrLeuTyrLeuValPheLysGl : 114 !!|||:!!!.! ! !!! !! !.!!!.!|||!!.||| ! |||:!!.!.:::.! lyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSe 274583 : GTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAG : 274639 115 : yAsnValPheLysArgCysLeuValHisValGluArgAspTrpLysThrValValAsp : 133 !!!.! !.!.::: !!|||:!!! !|||:!!:!!! !||||||!:!! !|||..! rLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArg 274640 : CAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGA : 274696 134 : GlnArgTyrArgArgIleMetValArgGlnSerSerValSerArgGlnLeuIleValL : 153 ! !..! !!!:!!:!:!:|||:!!!:!.!.:!!!.!:!!.!!||| ! :!! :!!! ProGluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIleP 274697 : CCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCT : 274756 154 : euCysValIlePheLeuTyrSerAlaGlyMetSerTyrGlnThrIleMetProPheVa : 172 !!|||!.! |||:!! ! !!!!.!! !:!:!!!||| ..!|||! !!|||.. heCysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheTh 274757 : TCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCAC : 274813 173 : lSerLysProLysMetArgGlyAsnGlnThrLeuArgProLeuIleTyrPro<-><-> : 190 !! !:!! !! ... !||||||:!!||| !! ! !! !!!:! ||| rMetGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLys 274814 : TATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAA : 274870 191 : GlyTyrAspAlaPhePheAspSerGlnAlaSerProThrTyrGluIleIlePheSerM : 209 !.!||| ! !.!! !!! !.!..!!||||||||| !!||||||:!!.!!:!! AlaTyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValLeuAlaS 274871 : GCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCT : 274930 210 : etLeuCysPheSerGlyPheIleArgTyrSerIleThrThrSerAlaTyrSerLeuAl : 228 !! !! ! ! |||||||||||| ! !!|||! !.!!..!.!!|||!:!|||||||| erGlnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAl 274931 : CGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGC : 274987 229 : aAlaThrPheValThrHisIleCysGlyGln<-><-><->ValGlnIleGlnIleAla : 244 ||||..!|||!.!.!!||| !! !|||||| :!!..!||| !|||.!! aAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThr 274988 : CGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACC : 275044 245 : ArgLeuGluAsnLeuAlaAlaSerSerGlnArgAsnThrGlyArgAsnProValAlaI : 264 ..!!!!! !|||! !:!! !.........:::|||... ::! !:!!!.!: GluPheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyV 275045 : GAGTTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCG : 275104 265 : leIleValArgGluHisValGluIleLeuArg : 274 !::!!|||..!.!.|||:!!..!:!!|||||| alValValGluHisHisLeuArgValLeuArg 275105 : TGGTTGTCGAACATCATCTGAGGGTACTCAGG : 275136 vulgar: Lalb_14621 17 274 . KQ414889.1 274353 275136 + 314 M 29 87 G 1 0 M 142 426 G 0 6 M 49 147 G 0 9 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274354 275136 314 + . gene_id 11 ; sequence Lalb_14621 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274354 275136 . + . KQ414889.1 exonerate:protein2genome:local exon 274354 275136 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 274354 275136 314 + . alignment_id 11 ; Query Lalb_14621 ; Align 274354 18 87 ; Align 274441 48 426 ; Align 274873 190 147 ; Align 275029 239 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 303 Query range: 16 -> 261 Target range: 259739 -> 260477 17 : PheAlaAsnSerAsnTyrLysSerAspValAsnTyrThrLeuGluMetCysArgTrpV : 36 |||!.!.!.!!!!:!!:!! ||| !! !:!!|||!:!|||:!!.!. !|||||| PheValGluThrSerPheThrSerHisSerAspTyrSerLeuGlnPheAsnArgTrpP 259740 : TTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCCAATTTAATCGATGGT : 259797 37 : alThrLysProIleGlyValTrpProPheValTyrSerArgThrSerLysLeuGluLy : 55 !! !||||||||||||!.!|||||| !! ||| !|||!!!!:!|||||||| heLeuLysProIleGlyAlaTrpPro---ProSerSerSerThrThrArgLeuGluLy 259798 : TCCTGAAACCGATAGGCGCTTGGCCA---CCTTCATCCTCCACGACCAGACTCGAGAA : 259851 56 : sLeuMetSerIleValLeuLeuThrValCysPheSerAspLeuLeuPheSerIleIle : 74 |:!!!!:|||:!!:!!|||:!! !:!!|||!:!||| !:!!||| !!!!!:!:||| sIleIleSerValIleLeuIlePheIleCysTyrSerThrIleLeuValThrLeuIle 259852 : GATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATACTGGTCACCCTGATC : 259908 75 : ProProGlyHisTyrValIlePheValGluLysAsnValTyrValIleValLysLeuL : 94 ||| !! !! !:!!:!!:!!.!!! !:!!:!!!:!:!!|||:!!! !..!|||:!!| ProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrMetLysThrLysValL 259909 : CCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGAAGGTGC : 259968 95 : euCysProIleAlaPheGlySerSerSerAlaIleLysTyrLeuTyrLeuValPheLy : 113 || !!|||:!!.!! ! !!! ! !.!!..!|||!!.||| ! |||:!!!!.!: euGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrThrThrLeuLeuLeuAr 259969 : TCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTGTTGAG : 260025 114 : sGlyAsnValPheLysArgCysLeuValHisValGluArgAspTrpLysThrValVal : 132 !|||!..! !.!. !!!|||:!!! !|||||||||!.!||||||!:!! !:!!..! gGlyArgAspIleLeuSerCysValGluHisValGluAsnAspTrpArgIleIleThr 260026 : AGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGAATTATAACG : 260082 133 : AspGlnArgTyrArgArgIleMetValArgGlnSerSerValSerArgGlnLeuIleV : 152 :!!!:! !!!:!!.!:!:|||:!!||| ! :!!!.! !!.!!||| ! :!! !! ArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgTyrValAlaA 260083 : AGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGATACGTCGCTG : 260142 153 : alLeuCysValIlePheLeuTyrSerAlaGlyMetSerTyrGlnThrIleMetProPh : 171 .!! !|||!.! !|||:!! ! .!!!.!! !:!!!!!!:! !:!!! ! !!! laSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCysLeuValThrValLe 260143 : CCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTCACGGTGTT : 260199 172 : eValSerLysProLysMetArgGlyAsnGlnThrLeuArgProLeuIleTyrPro<-> : 190 . !!!!:!! !! !... !||||||:!!||| !! ! !! !:!:! ||| uSerThrGluValIleGlnValGlyAsnGluThrArgIleValHisLeuLeuProCys 260200 : GAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTGCCGTGC : 260256 191 : <->GlyTyrAspAlaPhePheAspSerGlnAlaSerProThrTyrGluIleIlePheS : 208 ! !||| ! ! !.!..!.:!! !.!.! !||||||! ! !!||||||:!!.!! AlaValTyrLysGluLeuIleAsnValAsnAspSerProMetAsnGluIleValLeuV 260257 : GCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGATTGTTCTCG : 260316 209 : erMetLeuCysPheSerGlyPheIleArgTyrSerIleThrThrSerAlaTyrSerLe : 227 !:!!! !! ! !!|||||||||||| ! !!|||! !|||..!.!! !!:!||||| alValGlnPheValSerGlyPheIleValAsnSerSerThrValGlyIlePheSerLe 260317 : TCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTTCAGTCT : 260373 228 : uAlaAlaThrPheValThrHisIleCysGlyGlnValGlnIleGlnIleAlaArgLeu : 246 |||||||..!.!...!.!!||| |||||||||:!!.!.:!:! !!:! ! !!:!! uAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMetGluTrpIle 260374 : CGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAATGGATC : 260430 247 : GluAsnLeuAlaAlaSerSerGlnArgAsnThrGlyArgAsnPro : 261 !.!.!!!!.!! !..!|||::!!.!!..! ! !!:! !||| ThrGluPheValAspGluSerArgAsnArgLysLysLysAlaPro 260431 : ACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTCCT : 260477 vulgar: Lalb_14621 16 261 . KQ414889.1 259739 260477 + 303 M 28 84 G 1 0 M 144 432 G 0 6 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259740 260477 303 + . gene_id 12 ; sequence Lalb_14621 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259740 260477 . + . KQ414889.1 exonerate:protein2genome:local exon 259740 260477 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 259740 260477 303 + . alignment_id 12 ; Query Lalb_14621 ; Align 259740 17 84 ; Align 259824 46 432 ; Align 260262 190 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 297 Query range: 17 -> 274 Target range: 226900 -> 227680 18 : AlaAsnSerAsnTyrLysSerAspValAsnTyrThrLeuGluMetCysArgTrpValT : 37 .!!.!.!:!:!!|||:!!..! !!:!!||| !:!:!!:!!:!! !||||||:!! ThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuL 226901 : ACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGT : 226958 38 : hrLysProIleGlyValTrpProPheValTyrSerArgThrSerLysLeuGluLysLe : 56 !||||||:!!|||:!!|||||| !! !!!:!!:!|||::!:!!! !!:!! euLysProLeuGlyIleTrpPro---SerSerArgLysSerSerArgIleGlyArgCy 226959 : TGAAACCACTCGGTATCTGGCCG---TCGTCGCGCAAAAGCTCTCGAATAGGAAGATG : 227012 57 : uMetSerIleValLeuLeuThrValCysPheSerAspLeuLeuPheSerIleIlePro : 75 !.!.||| :!!:!! ! !:!!|||!:!:!! :!! !|||..!:!::!! !! sPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSer 227013 : TTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCG : 227069 76 : ProGlyHisTyrValIlePheValGluLysAsnValTyrValIleValLysLeuLeuC : 95 !||| ||||||:!!.!.! !! !|||..!!.!||| !! :!!|||:!!:!! SerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleG 227070 : AGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCG : 227129 96 : ysProIleAlaPheGlySerSerSerAlaIleLysTyrLeuTyrLeuValPheLysGl : 114 !!|||!!::!!||| !:!!! !||| !:!!||||||! ! |||..!||| ! ! lyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGl 227130 : GTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGA : 227186 115 : yAsnValPheLysArgCysLeuValHisValGluArgAspTrpLysThrValValAsp : 133 !:!!! !.!! ..!|||:!!! !!..:!!:!! !!|||||||||!.!:!! ! !! uAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyr 227187 : GGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATAC : 227243 134 : GlnArgTyrArgArgIleMetValArgGlnSerSerValSerArgGlnLeuIleValL : 153 ! !..! !!|||!.!:!:||||||! ! ! :!!! ! !.!!|||:!!||||||..!: LeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrI 227244 : CTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTA : 227303 154 : euCysValIlePheLeuTyrSerAlaGlyMetSerTyrGlnThrIleMetProPhe<- : 172 !!|||..!.!!|||:!!!:!|||::: ::: ::: ! !:!!:!:|||.!! leCysThrPhePheValPheSerSerPheValPhePheTyrIleValValProIleAs 227304 : TTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAA : 227360 173 : ><->ValSerLysProLysMetArgGlyAsnGlnThrLeuArgProLeuIleTyrPro : 189 ! !||| !!! ! ! !||||||!!.!:!! !! !! !:!! !:!||| nAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPhePro 227361 : CGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCG : 227417 190 : GlyTyrAspAlaPhePheAspSerGlnAlaSerProThrTyrGluIleIlePheSerM : 209 ! ! !.!! !||| !!:: !|||||| ! !!||||||.!!||||||: PheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerV 227418 : TTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGG : 227477 210 : etLeuCysPheSerGlyPheIleArgTyrSerIleThrThrSerAlaTyrSerLeuAl : 228 !:! !! ! ! !!!|||.!!:!: !:!!.!!:!!|||:!!:!!|||! !|||:!!|| alGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAl 227478 : TACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGC : 227534 229 : aAlaThrPheValThrHisIleCysGlyGlnValGlnIleGlnIleAlaArgLeuGlu : 247 |||| !.!!!.!..!||| !|||||||||:!!:!!:!: !:!::!! !!|||! ! aAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGly 227535 : AGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGA : 227591 248 : AsnLeu<-><->AlaAlaSerSerGlnArgAsnThrGlyArgAsnProValAlaIleI : 265 :!!||| !.! !:!!..!..!!!!!!.||| ! !:!! !:!!|||! !| HisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerI 227592 : CATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCA : 227651 266 : leValArgGluHisValGluIleLeuArg : 274 |||||! !.!.||||||..!||||||!:! leValThrHisHisValArgIleLeuLys 227652 : TCGTCACTCACCACGTTCGAATATTGAAG : 227680 vulgar: Lalb_14621 17 274 . KQ414889.1 226900 227680 + 297 M 27 81 G 1 0 M 126 378 G 0 6 M 78 234 G 0 6 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226901 227680 297 + . gene_id 13 ; sequence Lalb_14621 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226901 227680 . + . KQ414889.1 exonerate:protein2genome:local exon 226901 227680 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226901 227680 297 + . alignment_id 13 ; Query Lalb_14621 ; Align 226901 18 81 ; Align 226982 46 378 ; Align 227366 172 234 ; Align 227606 250 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 289 Query range: 4 -> 276 Target range: 256583 -> 257411 5 : MetArgAspArgSerAlaAspArgAlaAspAspCysPheAlaAsnSerAsnTyrLysS : 24 :!:||| !! !|||.!! ! ! !!!: !..! ! !.!!!.!!!|||!:!|||| LeuArgArgMetSerThrMetThrAsnGluPheAlaValValLysThrAsnPheLysS 256584 : CTTCGTCGCATGAGCACGATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAA : 256641 25 : erAspValAsnTyrThrLeuGluMetCysArgTrpValThrLysProIleGlyValTr : 43 || !! !:!!|||!:!|||:!!:!! !|||||| !! !||||||||||||!.!|| erTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTr 256642 : GTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATG : 256698 44 : pProPheValTyrSerArgThrSerLysLeuGluLysLeuMetSerIleValLeuLeu : 62 |||| !! ||| !|||!!!! ||||||::! !:!:|||||||||||| ! pPro---ProSerSerSerThrThrThrLeuGluArgAsnValSerIleValLeuAsn 256699 : GCCA---CCCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAAC : 256752 63 : ThrValCysPheSerAspLeuLeuPheSerIleIleProProGlyHisTyrValIleP : 82 ! !||||||!:!.!!..!:!!||||||!!!:!:|||||| ! !! !:!!|||.!!. IleValCysTyrGlySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheL 256753 : ATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTC : 256812 83 : heValGluLysAsnValTyrValIleValLysLeuLeuCysProIleAlaPheGlySe : 101 !!! !!!: ! !:! !!|||::: |||||| ... |||!!:::! ! !!! euAspAspAspSerPheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIl 256813 : TTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGAT : 256869 102 : rSerSerAlaIleLysTyrLeuTyrLeuValPheLysGlyAsnValPheLysArgCys : 120 !! !|||..! !!!.||| !! |||:!!!!.:!!|||!!.! !.!.::: !||| eIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCys 256870 : CATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGC : 256926 121 : LeuValHisValGluArgAspTrpLysThrValValAspGlnArgTyrArgArgIleM : 140 :!!! !|||:!!|||! !||||||!:!! !||| ! :!!!:! !!!:!!:!:!:| ValGluHisIleGluThrAspTrpArgMetValArgArgGluLysAspGlnGlnValM 256927 : GTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGA : 256986 141 : etValArgGlnSerSerValSerArgGlnLeuIleValLeuCysValIlePheLeuTy : 159 ||:!!!:!.!.:!!!!! !!.!!||| ! :!! !..!!!!|||!.! !.!!:!! ! etMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGl 256987 : TGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCA : 257043 160 : rSerAlaGlyMetSerTyrGlnThrIleMetProPheValSerLysProLysMetArg : 178 |||!.! ... ::: ..! ! !!.!. !!!!:!! !! ! nSerGlyValPheCysPhePheValSerSerAlaLeuAsnThrGluIleIleHisVal 257044 : AAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTG : 257100 179 : GlyAsnGlnThr<-><->LeuArgProLeuIleTyrProGlyTyrAspAlaPhePheA : 196 ||||||:!!||| :!!||| !||| ! ! !!! !||| ! !.!.!!.: GlyAsnGluThrThrIleValArgValLeuProValThrValTyrLysLysLeuLeuA 257101 : GGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGA : 257160 197 : spSerGlnAlaSerProThrTyrGluIleIlePheSerMetLeuCysPheSerGlyPh : 215 !! !.!. !||||||||| !!||||||:!: !!! !|||! ! !!::|||..!.! snValAspGlnSerProThrAsnGluIleValValPheMetGlnThrTrpSerSerIl 257161 : ACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGAT : 257217 216 : eIleArgTyrSerIleThrThrSerAlaTyrSerLeuAlaAlaThrPheValThrHis : 234 !||| ! !!!!! !|||..!||| !!:!||||||||||||..!|||!.!|||||| eIleAlaThrThrSerThrValSerIlePheSerLeuAlaAlaValPheAlaThrHis 257218 : TATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCAT : 257274 235 : IleCysGlyGlnValGlnIleGlnIleAlaArgLeuGluAsnLeuAlaAlaSerSerG : 254 ! !||||||:!! :!:! !!::!! !!:!! !.!.!!!!.! !..!|||: AlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGluPheValAsnGluSerA 257275 : GCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGA : 257334 255 : lnArgAsnThrGlyArgAsnPro<-><-><->ValAlaIleIleValArgGluHisVa : 270 :!!.!... ||| :!!!.!:!:||||||..!.!.|||:! rgAsnArgGluLysThrPheProPheLysGlnIleGlyValIleValGluHisHisLe 257335 : GGAATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTT : 257391 271 : lGluIleLeuArgTyrAsp : 276 !..!:!:||||||!! ||| uArgValLeuArg***Asp 257392 : AAGAGTGCTGAGGTAAGAT : 257411 vulgar: Lalb_14621 4 276 . KQ414889.1 256583 257411 + 289 M 40 120 G 1 0 M 137 411 G 0 6 M 79 237 G 0 9 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256584 257411 289 + . gene_id 14 ; sequence Lalb_14621 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256584 257411 . + . KQ414889.1 exonerate:protein2genome:local exon 256584 257411 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 256584 257411 289 + . alignment_id 14 ; Query Lalb_14621 ; Align 256584 5 120 ; Align 256704 46 411 ; Align 257121 183 237 ; Align 257367 262 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 284 Query range: 19 -> 276 Target range: 262825 -> 263608 20 : SerAsnTyrLysSerAspValAsnTyrThrLeuGluMetCysArgTrpValThrLysP : 39 ..!!:!!:! ||| ! !:!!|||!:!|||:!!!!: !||||||:!! !|||| GluSerPheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysP 262826 : GAAAGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAAC : 262883 40 : roIleGlyValTrpProPheValTyrSerArgThrSerLysLeuGluLysLeuMetSe : 58 ||||||||!.!||||||.!. ! !||| ! !|||!:!:!!|||::!:!!!!:!! roIleGlyAlaTrpProLeuSerAlaSer---IleSerArgMetGluArgIleIleTr 262884 : CGATCGGTGCATGGCCACTGTCCGCCTCG---ATCTCAAGAATGGAACGAATTATCTG : 262937 59 : rIleValLeuLeuThrValCysPheSerAspLeuLeuPheSerIleIleProProGly : 77 !.!!:!!|||:!!..!||||||!:!!!! !:!!|||! !!!!:!!|||||| !! ! pPheLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIle 262938 : GTTTCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATA : 262994 78 : HisTyrValIlePheValGluLysAsnValTyrValIleValLysLeuLeuCysProI : 97 ! !:!!:!!:!!.!.! !! :!!||| !!:!!:!!! :!!:!!:!!||| !!|||: LeuHisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProL 262995 : CTTCATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGC : 263054 98 : leAlaPheGlySerSerSerAlaIleLysTyrLeuTyrLeuValPheLysGlyAsnVa : 116 !!!.! !!! ! !.!! !|||!!.||| !!::|||:!!.!! ! .!!!!.! euGlyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAs 263055 : TCGGTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGA : 263111 117 : lPheLysArgCysLeuValHisValGluArgAspTrpLysThrValValAspGlnArg : 135 !.!.:!! !!|||:!! !||||||:!!..!|||||| ! !|||..! !..! pIleGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGlu 263112 : TATACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAG : 263168 136 : TyrArgArgIleMetValArgGlnSerSerValSerArgGlnLeuIleValLeuCysV : 155 !!!:!|||||||||:!!!:!.!.:!!!.! !.!!||| ! :!! !!.!! !|||! AspGlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysA 263169 : GATCAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCG : 263228 156 : alIlePheLeuTyrSerAlaGlyMetSerTyrGlnThrIleMetProPheValSerLy : 174 .!||||||:!! ! !!!::! !|||!!! ! !:!!! !!|||..!!!!:! laIlePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGl 263229 : CGATCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACA : 263285 175 : sProLysMetArgGlyAsnGlnThr<-><->LeuArgProLeuIleTyrProGlyTyr : 191 ! !! ! !||||||:!!||| |||||| !||| ! !|||! !||| nValIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyr 263286 : GGTGATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTAC : 263342 192 : AspAlaPhePheAspSerGlnAlaSerProThrTyrGluIleIlePheSerMetLeuC : 211 ! ! !.!!.!! !.!..!!!:!|||||| !!||||||.!!.!!:!!! !! !! LysGluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnP 263343 : AAAGAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAAT : 263402 212 : ysPheSerGlyPheIleArgTyrSerIleThrThrSerAlaTyrSerLeuAlaAlaTh : 230 !.!.|||||||||||| ! !:!!! !|||..!.!!|||!:!.!!:!!.!!|||.. heLeuSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaVa 263403 : TTCTGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGT : 263459 231 : rPheValThrHisIleCysGlyGlnValGlnIle<-><-><->GlnIleAlaArgLeu : 246 !|||!.! !||| !|||||||||:!!.!.:!: !|||.!!..!!!! lPheAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPhe 263460 : GTTCGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTC : 263516 247 : GluAsnLeuAlaAlaSerSerGlnArgAsnThrGlyArgAsnProValAlaIleIleV : 266 ! !|||! !:!! !..!..!.!.!:!||| ! ! !!.! !:!!!.!:!:|||| ValAsnGlnSerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleV 263517 : GTGAACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCG : 263576 267 : alArgGluHisValGluIleLeuArgTyrAsp : 276 ||..!.!.|||:!!..!:!!||||||!! ||| alGluHisHisLeuArgValLeuArg***Asp 263577 : TTGAACATCATCTGAGAGTTCTGAGGTAAGAT : 263608 vulgar: Lalb_14621 19 276 . KQ414889.1 262825 263608 + 284 M 29 87 G 1 0 M 133 399 G 0 6 M 59 177 G 0 9 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262826 263608 284 + . gene_id 15 ; sequence Lalb_14621 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262826 263608 . + . KQ414889.1 exonerate:protein2genome:local exon 262826 263608 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 262826 263608 284 + . alignment_id 15 ; Query Lalb_14621 ; Align 262826 20 87 ; Align 262913 50 399 ; Align 263318 183 177 ; Align 263504 242 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 237 Query range: 20 -> 255 Target range: 236831 -> 237533 21 : AsnTyrLysSerAspValAsnTyrThrLeuGluMetCysArgTrpValThrLysProI : 40 ||| ! :!!..! !:!!|||!:!|||:!! ! !||||||!.!! !||| !| AsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerI 236832 : AATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCA : 236889 41 : leGlyValTrpProPheValTyrSerArgThrSerLysLeuGluLysLeuMetSerIl : 59 |||||..!|||||| ..! !:!!|||!!.||||||!:! !!!:||| leGlyThrTrpPro---------GlnPheSerSerAsnLeuGluArgAsnIleSerAr 236890 : TAGGCACATGGCCA---------CAGTTCTCGTCGAACCTCGAGAGAAACATCTCTCG : 236937 60 : eValLeuLeuThrValCysPheSerAspLeuLeuPheSerIleIleProProGlyHis : 78 !:!!||| !..!:!!|||!:!!!!! :!!|||||||||||||||||| !..! gIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeu 236938 : AATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTG : 236994 79 : TyrValIlePheValGluLysAsnValTyrValIleValLysLeuLeuCysProIleA : 98 :!!:!!!!:.!.! !:!! !!.! !!|||..!! !||||||:!!||| !! !!:!:: HisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuS 236995 : CACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGA : 237054 99 : laPheGlySerSerSerAlaIleLysTyrLeuTyrLeuValPheLysGlyAsnValPh : 117 :! ! !! !! !!!! !|||!..||| ! |||:!!.!.::! !!!!...!.! erHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIl 237055 : GCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCAT : 237111 118 : eLysArgCysLeuValHisValGluArgAspTrpLysThrValValAspGlnArgTyr : 136 .:::!.!! !!!! !|||:!!|||! !||||||!:!|||..!... :::... eArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLys 237112 : ACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaag : 237168 137 : ArgArgIleMetValArgGlnSerSerValSerArgGlnLeuIleValLeuCysValI : 156 :::...:::|||:!!!:! ! :!!!.! !!|||||| ! ! :!!! !|||..!| LysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrI 237169 : aaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGA : 237228 157 : lePheLeuTyrSerAlaGlyMetSerTyrGlnThrIleMetProPheValSerLysPr : 175 |||||:!!:!!.!!!.! !:!:.!!||| ..!!!:! !!! !..!!!!! ! lePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaSerThrThrMetVa 237229 : TCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGT : 237285 176 : oLysMetArgGlyAsnGlnThr<-><->LeuArgProLeuIleTyrProGlyTyrAsp : 192 ! :!! !||||||:!!||| |||||| !||| !! ||| !||| ! lValValValGlyAsnLysThrThrIleLeuArgValLeuProLeuProMetTyrLys 237286 : TGTCGTGGTTGGAAACAAGACTACGATCTTGCGCGTGCTGCCCTTACCAATGTACAAA : 237342 193 : AlaPhePheAspSerGlnAlaSerProThrTyrGluIleIlePheSerMetLeuCysP : 212 !.!.!!.!! !.!..!!!:! !!! ! !!!!:|||:!! !!! ! ! !! !. GlyLeuLeuProValAspThrAsnThrMetAsnAspIleValValLeuSerGlnPheL 237343 : GGGCTCCTTCCAGTCGATACGAATACTATGAACGACATCGTTGTTTTGTCACAATTTC : 237402 213 : heSerGlyPheIleArgTyrSerIleThrThrSerAlaTyrSerLeuAlaAlaThrPh : 231 !!|||||||||||| ! !!!:!! !.!!! !|||!.! ||||||.!!::!.!!.! euSerGlyPheIleAlaAsnAsnSerAlaIleSerValIleSerLeuThrSerAlaLe 237403 : TCTCCGGATTTATAGCGAACAACAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCT : 237459 232 : eValThrHisIleCysGlyGlnValGlnIleGlnIleAlaArgLeuGluAsnLeuAla : 250 ...!:!!||| ! !||||||:!!...:!: !!: ! !:!!|||:!!!!!!.! uThrSerHisAlaSerGlyGlnLeuSerValValMetLeuSerIleGluAspPheVal 237460 : AACATCACACGCGTCTGGCCAGTTGAGCGTGGTTATGTTGTCGATCGAAGATTTTGTG : 237516 251 : AlaSerSerGlnArg : 255 ::!..!:!!::!||| SerGluAlaArgArg 237517 : AGTGAAGCGAGACGC : 237533 vulgar: Lalb_14621 20 255 . KQ414889.1 236831 237533 + 237 M 24 72 G 3 0 M 135 405 G 0 6 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236832 237533 237 + . gene_id 16 ; sequence Lalb_14621 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236832 237533 . + . KQ414889.1 exonerate:protein2genome:local exon 236832 237533 . + . insertions 6 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 236832 237533 237 + . alignment_id 16 ; Query Lalb_14621 ; Align 236832 21 72 ; Align 236904 48 405 ; Align 237315 183 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 216 Query range: 16 -> 276 Target range: 194138 -> 194909 17 : PheAlaAsnSerAsnTyrLysSerAspValAsnTyrThrLeuGluMetCysArgTrpV : 36 !:! !||| !|||||||||! !|||..!.!.|||.!!:!!..!:!:...!:! !: TyrArgAsnValAsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaL 194139 : TACCGCAACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGC : 194196 37 : alThrLysProIleGlyValTrpProPheValTyrSerArgThrSerLysLeuGluLy : 55 !! !! !|||||||||:!!|||||| !!!..! !||| ! !!!:!: euLeuThrProIleGlyIleTrpPro---------ArgGluAspSerLeuArgAspAr 194197 : TTCTAACACCGATCGGTATCTGGCCA---------AGGGAGGATTCTCTTCGCGACAG : 194244 56 : sLeuMetSerIleValLeuLeuThrValCysPheSerAspLeuLeuPheSerIleIle : 74 !:!! !.!!!.!! ! ! !||| !|||:!! :!!! !||| !:!::!! gValArgLeuPheAlaGlnThrGlyValValPheAlaLeuMetCysPheLeuLeuVal 194245 : AGTCCGACTGTTCGCTCAAACTGGCGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTA : 194301 75 : ProProGlyHisTyrValIlePheValGluLysAsnValTyrValIleValLysLeuL : 94 |||! !! ! !|||..! !|||! ! :!!:!!:!! ! !:!!|||:!!: ProHisValIleTyrThrTyrPheAspCysGluAspLeuThrArgTyrMetLysValI 194302 : CCTCACGTGATCTACACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAA : 194361 95 : euCysProIleAlaPheGlySerSerSerAlaIleLysTyrLeuTyrLeuValPheLy : 113 !!... !! !!.!|||.!! !! !:!! !||||||!:!! ! :!!:!! ! !! leAlaAlaGlnValPheSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAs 194362 : TCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAA : 194418 114 : sGlyAsnValPheLysArgCysLeuValHisValGluArgAspTrpLysThrValVal : 132 . !!!!.! !.!!!:! !||||||:!!.!.:!!|||! !.!.!::!:! !|||! ! nArgLysGluIleArgPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGlu 194419 : CAGGAAAGAGATCAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAG : 194475 133 : AspGlnArgTyrArgArgIleMetValArgGlnSerSerValSerArgGlnLeuIleV : 152 !:!!..! !!|||!:!:!:|||..!!.! :!!!.!:!!.!!||| !!!! !. CysGluGluAspArgGlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrT 194476 : TGCGAGGAGGATCGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTA : 194535 153 : alLeuCysValIlePheLeuTyrSerAlaGlyMetSerTyrGlnThrIleMetProPh : 171 .!|||! !:!! !.!!! !|||.!!!.!!.!:!! !!|||!!.! !|||:!:|||.! hrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLe 194536 : CCCTGTACTTGGGACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCT : 194592 172 : eValSerLysProLysMetArg<->GlyAsnGlnThrLeuArgProLeuIleTyrPro : 189 .:!!|||:!! !! :!:!:! ! !|||...|||! !! !|||||| !||| ! uMetSerGluArgIleValLysGluAspAsnSerThrGlnIleProLeuProTyrLeu 194593 : GATGTCGGAGAGGATTGTCAAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTG : 194649 190 : GlyTyrAspAlaPhePheAspSerGlnAlaSerProThrTyrGluIleIlePheSerM : 209 .!! !! !!!.!||||||! ! !:!!! !||||||! !|||||||||! !||| ! SerAsnTyrValPhePheAlaIleGluAspSerProIleTyrGluIleThrPheValS 194650 : AGCAACTATGTTTTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCT : 194709 210 : etLeuCysPheSerGlyPheIleArgTyrSerIleThrThrSerAlaTyrSerLeuAl : 228 !! ! .!.! !.!! !|||! !! |||! !.! !.!! !|||||||||!. erGlnIleLeuIleSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuVa 194710 : CGCAGATACTGATTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGT : 194766 229 : aAlaThrPheValThrHisIleCysGlyGlnValGlnIleGlnIleAlaArgLeuGlu : 247 !||||||.!!:!!! !||| !|||||| ! !!:!!:!: ! ! !|||:!!||| lAlaThrIleIleMetHisCysCysGlyLeuPheGluValThrSerArgArgMetGlu 194767 : CGCTACTATTATTATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGATGGAG : 194823 248 : AsnLeuAlaAlaSerSerGlnArgAsnThrGlyArgAsnProValAlaIleIleValA : 267 !.!:!!:!!!.! !!!!! !!:!:!!! ! |||..! !:!! ! !:!!|||! ThrIleSerValProThrGlyLysAspIle---ArgGlyArgLeuArgAspValValG 194824 : ACTATTTCTGTGCCCACTGGGAAGGATATT---CGGGGTAGACTTAGGGACGTCGTTC : 194880 268 : rgGluHisValGluIleLeuArgTyrAsp : 276 :! |||:!!:!! !:!!!:!!! ||| lnPheHisLeuLysAlaIleLys***Asp 194881 : AGTTTCATCTGAAAGCAATTAAGTAAGAT : 194909 vulgar: Lalb_14621 16 276 . KQ414889.1 194138 194909 + 216 M 28 84 G 3 0 M 131 393 G 0 3 M 79 237 G 1 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194139 194909 216 + . gene_id 17 ; sequence Lalb_14621 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194139 194909 . + . KQ414889.1 exonerate:protein2genome:local exon 194139 194909 . + . insertions 3 ; deletions 4 KQ414889.1 exonerate:protein2genome:local similarity 194139 194909 216 + . alignment_id 17 ; Query Lalb_14621 ; Align 194139 17 84 ; Align 194223 48 393 ; Align 194619 179 237 ; Align 194856 259 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 216 Query range: 328 -> 381 Target range: 301877 -> 302036 329 : CysSerLysIleGlyProAlaValTyrGluIleAspTrpTyrAsnLeuProTyrLysL : 348 ||||||:!!|||||| !!||| !||||||||||||||||||||||||||| |||! CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysA 301878 : TGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGA : 301935 349 : ysAlaHisAspLeuIleLeuLeuSerValValSerAsnHisProProLysLeuThrAl : 367 :!|||:!!|||||||||||||||||||||:!!|||.!.:!!||||||||||||||||| rgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAl 301936 : GAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGC : 301992 368 : aGlyLysMetPheThrLeuSerLeuAsnThrPheSerSerVal : 381 |||||||!!:.!! !||||||||||||||||||||||||||| aGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301993 : AGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: Lalb_14621 328 381 . KQ414889.1 301877 302036 + 216 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301878 302036 216 + . gene_id 18 ; sequence Lalb_14621 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301878 302036 216 + . alignment_id 18 ; Query Lalb_14621 ; Align 301878 329 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 329 -> 384 Target range: 292395 -> 292560 330 : SerLysIleGlyProAlaValTyrGluIleAspTrpTyrAsnLeuProTyrLysLysA : 349 |||:!!|||!.!! !||| !|||!!:! !!!:||||||||||||||| ::!|||| SerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgArgLysA 292396 : AGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGG : 292453 350 : laHisAspLeuIleLeuLeuSerValValSerAsnHisProProLysLeuThrAlaGl : 368 ||!.!|||:!!:!!|||:!! !!.!:!!!!!!!.|||||| !|||||||||||||| laArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuThrAlaGl 292454 : CTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGG : 292510 369 : yLysMetPheThrLeuSerLeuAsnThrPheSerSerValGlyAspAla : 384 ||||!!:|||..!||||||||||||||||||.!!:!!||| !!!!::!! yLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSer 292511 : CAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCA : 292560 vulgar: Lalb_14621 329 384 . KQ414889.1 292395 292560 + 164 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292396 292560 164 + . gene_id 19 ; sequence Lalb_14621 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292396 292560 . + . KQ414889.1 exonerate:protein2genome:local exon 292396 292560 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292396 292560 164 + . alignment_id 19 ; Query Lalb_14621 ; Align 292396 330 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 327 -> 381 Target range: 297641 -> 297803 328 : AsnCysSerLysIleGlyProAlaValTyrGluIleAspTrpTyrAsnLeuProTyrL : 347 .!...!..!|||.!!||| !|||!.!|||.!.|||!!:||||||||||||||| ! GlnAlaGluLysPheGlyAsnAlaAlaTyrAsnIleGluTrpTyrAsnLeuProProA 297642 : CAGGCTGAAAAATTCGGCAATGCAGCTTATAACATCGAATGGTACAACTTACCGCCAA : 297699 348 : ysLysAlaHisAspLeuIleLeuLeuSerValValSerAsnHisProProLysLeuTh : 366 !.!:!|||! !||||||:!:|||:!!! !! !:!!:!!!!. !||||||!:!||||| snArgAlaLeuAspLeuValLeuMetIleGlyIleAlaLysPheProProArgLeuTh 297700 : ACAGGGCTCTCGATCTGGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCAC : 297756 367 : rAlaGlyLysMetPheThrLeuSerLeuAsnThrPheSerSerVal : 381 |...||||||:::||| :::|||:!!||||||||||||:!!||| rGlyGlyLysIlePheAspIleSerIleAsnThrPheSerAlaVal 297757 : AggtggaaaaatattcgatatatCGATAAACACGTTCAGTGCCGTA : 297803 vulgar: Lalb_14621 327 381 . KQ414889.1 297641 297803 + 154 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297642 297803 154 + . gene_id 20 ; sequence Lalb_14621 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297642 297803 . + . KQ414889.1 exonerate:protein2genome:local exon 297642 297803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297642 297803 154 + . alignment_id 20 ; Query Lalb_14621 ; Align 297642 328 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 318 -> 381 Target range: 280246 -> 280435 319 : SerProThrCysArgAlaTyrAsnGluAsnCysSerLysIleGlyProAlaValTyrG : 338 ||| !|||! !! !::!!:! !..! ! |||! !|||:!!||| !:!!..!||| SerGluThrPheIleSerPheValSer***CysLeuLysValGlyValSerThrTyrM 280247 : TCAGAGACATTTATAAGCTTCGTTTCATAGTGCTTAAAAGTCGGCGTGTCAACTTACA : 280304 339 : luIleAspTrpTyrAsnLeuProTyrLysLysAlaHisAspLeuIleLeuLeuSerVa : 357 !||||||||||||..!|||||| |||||||||!!.! !|||||||||:!!! !!. etIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAl 280305 : TGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGC : 280361 358 : lValSerAsnHisProProLysLeuThrAlaGlyLysMetPheThrLeuSerLeuAsn : 376 !||||||||| ! !! !||||||||||||||||||!!:.!! !|||||||||!:! aValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSer 280362 : CGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGC : 280418 377 : ThrPheSerSerVal : 381 !:!|||!!!|||||| SerPheCysSerVal 280419 : AGCTTCTGCAGCGTG : 280435 vulgar: Lalb_14621 318 381 . KQ414889.1 280246 280435 + 151 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280247 280435 151 + . gene_id 21 ; sequence Lalb_14621 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280247 280435 . + . KQ414889.1 exonerate:protein2genome:local exon 280247 280435 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280247 280435 151 + . alignment_id 21 ; Query Lalb_14621 ; Align 280247 319 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 328 -> 381 Target range: 287063 -> 287222 329 : CysSerLysIleGlyProAlaValTyrGluIleAspTrpTyrAsnLeuProTyrLysL : 348 |||! !|||:!!||| !:!!..!||| !||||||||||||..!|||||| |||! CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysT 287064 : tGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAA : 287121 349 : ysAlaHisAspLeuIleLeuLeuSerValValSerAsnHisProProLysLeuThrAl : 367 !|||!!.! !|||||||||:!!! !!.!||||||||| ! !! !||||||||||| hrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 287122 : CAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 287178 368 : aGlyLysMetPheThrLeuSerLeuAsnThrPheSerSerVal : 381 |||||||!!:.!! !|||||||||!:!!:!|||!!!|||||| aGlyLysIleIleAspLeuSerLeuSerSerPheCysSerVal 287179 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTG : 287222 vulgar: Lalb_14621 328 381 . KQ414889.1 287063 287222 + 144 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287064 287222 144 + . gene_id 22 ; sequence Lalb_14621 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287064 287222 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287222 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287064 287222 144 + . alignment_id 22 ; Query Lalb_14621 ; Align 287064 329 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 327 -> 383 Target range: 254271 -> 254439 328 : AsnCysSerLysIleGlyProAlaValTyrGluIleAspTrpTyrAsnLeuProTyrL : 347 .!.|||! !|||:!!||| !!.!|||||| !! !||||||||| !!|||||| ! ! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 348 : ysLysAlaHisAspLeuIleLeuLeuSerValValSerAsnHisProProLysLeuTh : 366 :!!:! !! !||||||||||||:!!! !..! !|||||| ! !:!!:!!|| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 367 : rAlaGlyLysMetPheThrLeuSerLeuAsnThrPheSerSerValGlyAsp : 383 ||||||||||:::||| :::|||||| !!||||||.!!..!|||.!!!!: rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGlu 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAA : 254439 vulgar: Lalb_14621 327 383 . KQ414889.1 254271 254439 + 131 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254439 131 + . gene_id 23 ; sequence Lalb_14621 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254439 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254439 131 + . alignment_id 23 ; Query Lalb_14621 ; Align 254272 328 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 327 -> 384 Target range: 264723 -> 264894 328 : AsnCysSerLysIleGlyProAlaValTyrGluIleAspTrpTyrAsnLeuProTyrL : 347 .!.|||!.!|||:!!||| !!.!|||||| ! :!!|||||| !!|||||||||| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 348 : ysLysAlaHisAspLeuIleLeuLeuSerValValSerAsnHisProProLysLeuTh : 366 || ! !! !||||||||||||:!!! !:!! !|||!:! ! !|||!!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 367 : rAlaGlyLysMetPheThrLeuSerLeuAsnThrPheSerSerValGlyAspAla : 384 ||||||||||!!:.!! !:!!|||:!! !!|||||||||..!||| !!..!||| rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspValArgSerAla 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTACGTTCCGCT : 264894 vulgar: Lalb_14621 327 384 . KQ414889.1 264723 264894 + 127 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264894 127 + . gene_id 24 ; sequence Lalb_14621 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264894 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264894 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264894 127 + . alignment_id 24 ; Query Lalb_14621 ; Align 264724 328 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 327 -> 383 Target range: 238625 -> 238793 328 : AsnCysSerLysIleGlyProAlaValTyrGluIleAspTrpTyrAsnLeuProTyrL : 347 .!.|||! !|||:!!||| !!.!|||||| !! !||||||||| !!|||||| ! ! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 348 : ysLysAlaHisAspLeuIleLeuLeuSerValValSerAsnHisProProLysLeuTh : 366 :!!:! !! !||||||||||||:!!! ! ! !|||||| ! !|||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 367 : rAlaGlyLysMetPheThrLeuSerLeuAsnThrPheSerSerValGlyAsp : 383 ||||||||||:!:!!. !:!!|||||| !!||||||.!!..!|||.!!!!: rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGlu 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAA : 238793 vulgar: Lalb_14621 327 383 . KQ414889.1 238625 238793 + 126 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238793 126 + . gene_id 25 ; sequence Lalb_14621 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238793 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238793 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238793 126 + . alignment_id 25 ; Query Lalb_14621 ; Align 238626 328 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 331 -> 381 Target range: 206251 -> 206401 332 : IleGlyProAlaValTyrGluIleAspTrpTyrAsnLeuProTyrLysLysAlaHisA : 351 :!:||| !.!! !! ! !:!::!!||||||..!|||||| !!!:! ! |||!.!. ValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgS 206252 : GTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCT : 206309 352 : spLeuIleLeuLeuSerValValSerAsnHisProProLysLeuThrAlaGlyLysMe : 370 .!:!!||||||:!!! !!.!:!!||||||:!!||| !|||||||||||||||||||| erMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMe 206310 : CTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAAT : 206366 371 : tPheThrLeuSerLeuAsnThrPheSerSerVal : 381 |||| !:!!|||||| !!:!|||!!!..!||| tPheGluMetSerLeuAlaSerPheThrAspVal 206367 : GTTCGAAATGTCTTTAGCTAGTTTCACCGATGTA : 206401 vulgar: Lalb_14621 331 381 . KQ414889.1 206251 206401 + 123 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206252 206401 123 + . gene_id 26 ; sequence Lalb_14621 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206252 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206252 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206252 206401 123 + . alignment_id 26 ; Query Lalb_14621 ; Align 206252 332 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 325 -> 381 Target range: 234979 -> 235147 326 : AsnGluAsnCysSerLysIleGlyProAlaValTyrGluIleAspTrpTyrAsnLeuP : 345 !.!:!!.!.|||!!!|||:!!||| ! !|||||| !! !!!:||||||...|||| ThrGlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuP 234980 : ACTCAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTAC : 235037 346 : roTyrLysLysAlaHisAspLeuIleLeuLeuSerValValSerAsnHisProProLy : 364 ||:!!|||! |||! !! !|||:!!:!!:!!! ! ! !|||!:! ! !|| roHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLy 235038 : CTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAA : 235094 365 : sLeuThrAlaGlyLysMetPheThrLeuSerLeuAsnThrPheSerSerVal : 381 |:!!||||||||||||.!..!. !:!!|||:!! ||||||.!!..!||| sIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235095 : AATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: Lalb_14621 325 381 . KQ414889.1 234979 235147 + 117 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234980 235147 117 + . gene_id 27 ; sequence Lalb_14621 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234980 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234980 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234980 235147 117 + . alignment_id 27 ; Query Lalb_14621 ; Align 234980 326 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 327 -> 381 Target range: 230244 -> 230406 328 : AsnCysSerLysIleGlyProAlaValTyrGluIleAspTrpTyrAsnLeuProTyrL : 347 .!.|||!!!|||:!!||| ! ! !||| !|||!!:||||||...||| !! ! GlnCysArgLysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyA 230245 : CAGTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAA : 230302 348 : ysLysAlaHisAspLeuIleLeuLeuSerValValSerAsnHisProProLysLeuTh : 366 !.||| !! ! !! !||||||:!!! !!.!:!!|||||| ! !! !!|||!!!|| snLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheTh 230303 : ACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTAC : 230359 367 : rAlaGlyLysMetPheThrLeuSerLeuAsnThrPheSerSerVal : 381 |||||||!!.||| !! !||||||:!!||||||||||||..!||| rAlaGlyAsnMetValGluLeuSerValAsnThrPheSerAspVal 230360 : AGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGACGTA : 230406 vulgar: Lalb_14621 327 381 . KQ414889.1 230244 230406 + 115 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230245 230406 115 + . gene_id 28 ; sequence Lalb_14621 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230245 230406 . + . KQ414889.1 exonerate:protein2genome:local exon 230245 230406 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230245 230406 115 + . alignment_id 28 ; Query Lalb_14621 ; Align 230245 328 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 326 -> 381 Target range: 277548 -> 277713 327 : GluAsnCysSerLysIleGlyProAlaValTyrGluIleAspTrpTyrAsnLeuProT : 346 ..!.!.|||!.!|||:!!||| !!.!|||||| !! :!!|||||| !!|||||| ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 347 : yrLysLysAlaHisAspLeuIleLeuLeuSerValValSerAsnHisProProLysLe : 365 !!||| ! !! !:!!|||:!!|||:!!! ! ! !|||!:! |||:: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 366 : uThrAlaGlyLysMetPheThrLeuSerLeuAsnThrPheSerSerVal : 381 :||||||||||||:::... :::|||:!! !!||||||.!!..!||| eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspVal 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTA : 277713 vulgar: Lalb_14621 326 381 . KQ414889.1 277548 277713 + 106 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277713 106 + . gene_id 29 ; sequence Lalb_14621 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277549 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277713 106 + . alignment_id 29 ; Query Lalb_14621 ; Align 277549 327 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14628 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1136 Query range: 0 -> 375 Target range: 217105 -> 219809 1 : MetThrLysGlnGluIleIleSerSerAsnSerLeuThrArgAspAsnAspTyrLysL : 20 ||| !|||! ! !! !! !!.!..!.!.|||! !! !! !||| !!!!:|||:::| MetGlnLysLeuAlaThrAsnLysGluGlnSerProArgThrAspTyrGluTyrGluL 217106 : ATGCAAAAACTTGCAACAAACAAGGAACAATCCCCCAGAACCGACTACGAgtacgaga : 217163 21 : ysAspValAspLeuSerIleGluTrpAsnArgTrpIleLeuLysProMetGlyValTr : 39 ||:::::::::|||||||||:!!||||||||||||:!:|||||||||||||||:!!|| ysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTr 217164 : aaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTG : 217220 40 : pProArgSerArgHisValSerGlnLeuGluValCysPheAsnTrpLeuIleAsnAla : 58 ||||!.!|||||| !..!!!!::!! !..! ! !.!! !! |||||||||||| pProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAla 217221 : GCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCC : 217277 59 : ValCysTyrSerLeuIleSerPheValPheAlaProCysTyrLeuTyrValSerLeuG : 78 :!!||||||.!!||||||||||||:!!|||!.!||||||! !:!!||||||! !|||| LeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeuG 217278 : TTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCG : 217337 79 : luValGluGluValTyrGluLysLeuLysLeuSerAlaProLeuIlePheCysValMe : 97 ||||||||!!::!!|||!!:||||||||||||! !!.!|||||||||||||||||||| luValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValMe 217338 : AAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGAT : 217394 98 : tAlaTyrIleLysTyrTyrSerLeuMetAlaHisThrAsnAspIleArgGluCysIle : 116 ||||!:!:!!|||||||||||||||!!:!.!|||! ! |||||||||||||||:!: tAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCysVal 217395 : GGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTG : 217451 117 : LysCysIleGluTrpAspTrpArgAsnValSerHisSerGluAspArgGluIleMetV : 136 !:! ! |||||| !!|||||||||||||||!!! !..!:!!||||||||| |||: ArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArgGluAlaMetI 217452 : AGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGA : 217511 137 : alAlaAsnAlaIlePheGlyArgArgLeuValLysIleCysThrPhePheMetPheSe : 155 !!!.!||||||! !|||||||||!:!|||||| !:!!|||||||||||||||!:!|| leValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrSe 217512 : TAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAG : 217568 156 : rGlyPheValPhePheTyrIleAlaValProMetSerValGlyLysIleAlaIleGlu : 174 |||||||||||||:::|||||||||:!!|||!!:|||||||||!:!||| ! ||| rGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGlu 217569 : CggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAG : 217625 175 : GlyAlaAsnArgThrPheIleProLeuMetTyrProValSerLysLeuIleValAspT : 194 ..!!.!|||! !|||||||||||||||:!!!:!||| !!!!!|||! !|||:!!|||| AsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyrIleIleAspT 217626 : AATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATA : 217685 195 : hrGlnArgAsnProSerAsnGlnIlePhePheSerIleGlnPheValGlyGlyIleLe : 213 ||!:: !!.!|||!!!|||:!!||| ! |||! !:!!|||!!.:!!!.!||| !|| hrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLe 217686 : CTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTT : 217742 214 : uMetAsnAlaAsnAlaAlaGlyAlaCysCysLeuAlaValAlaPheAlaValHisAla : 232 ||||:!!!.!! !.!!:!!!.!|||||| !!||||||!.!|||||||||||||||||| uMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAla 217743 : GATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCC : 217799 233 : CysGlyGlnMetGlnValLeuMetCysTrpMetSerHisLeuValAspGlyArgValA : 252 |||||||||!!::!!||||||||| !|||:!!..!||||||:!!|||||||||!.!| CysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgAlaA 217800 : TGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGAGCGG : 217859 253 : spMetSerAsnThrThrAsnGlyArgIleAlaLysIleValSerGlnHis >>>> T : 269 ||||||||:!!|||..!:!!||||||||||||!..||||||||||||||| spMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnHis++ 217860 : ATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACgt...... : 217912 270 : arget Intron 1 >>>> GluSerArgAlaLysAspMetThrAlaValAlaThrT : 281 1419 bp |||!!!!:!:!!!!.|||:!:|||::!!.!!.!|||| ++GluTrpLysSerAsnAspValThrSerAlaValThrT 217913 : ...................agGAATGGAAATCGAATGATGTAACGAGTGCAGTGACAT : 219365 282 : yrAlaIleIleLeuValSerLeuIlePheAsnIlePheIlePheCysTyrIleGlyGl : 300 || !|||:!!|||:!!|||||| |||||||||||||||||||||||||||||||| yrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGl 219366 : ACATCATTCTACTTATATCCCTcactttcaacattttcatattttgctaCATAGGAGA : 219422 301 : uLeuValAlaGluGln >>>> Target Intron 2 >>>> TyrArgLysValG : 310 |:!!|||||||||||| 73 bp ! ||||||:::| uIleValAlaGluGln++ ++CysArgLysIleG 219423 : GATCGTTGCTGAACAggt.........................agTGtaggaaaattg : 219525 311 : lyGlnMetSerTyrMetIleAspTrpTyrArgLeuProGluAsnThrLysLeuSerVa : 329 ||:::|||||||||||||||!!:|||||||||||| !!! !!!.! !||||||!!! lyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysLysLeuTrpSe 219526 : gagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAG : 219582 330 : lValLeuIleMetAlaMetSerSerSerProThrAsnLeuThrAlaGlyArgLeuVal : 348 !||||||! !!!:|||||||||!:!||| !!! !!!.||||||||||||!.!:!!||| rValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetVal 219583 : CGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGGAAATATGGTC : 219639 349 : LysLeuSerLeuValSerPheSerAsp >>>> Target Intron 3 >>>> Va : 358 :!!||||||:!! !!!!|||!!!||| 87 bp || GluLeuSerIleSerThrPheThrAsp++ ++Va 219640 : GAATTGTCTATCAGCACTTTTACCGACgt.........................agGT : 219756 359 : lMetLysThrSerValAlaPheLeuAsnMetLeuArgThrLeuThrAspThr : 375 |:!:||||||:!!|||.!!|||||||||:!:||||||||||||||| ||| lValLysThrAlaValThrPheLeuAsnValLeuArgThrLeuThr***Thr 219757 : CGTTAAGACTGCAGTCACGTTTCTGAATGTACTACGAACATTGACTTGAACG : 219809 vulgar: Lalb_14628 0 375 . KQ414889.1 217105 219809 + 1136 M 268 804 5 0 2 I 0 1415 3 0 2 M 37 111 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 83 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217106 219809 1136 + . gene_id 1 ; sequence Lalb_14628 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217106 217909 . + . KQ414889.1 exonerate:protein2genome:local exon 217106 217909 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217910 217911 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217910 219328 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219668 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219668 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219669 219670 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219669 219755 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219754 219755 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219756 219809 . + . KQ414889.1 exonerate:protein2genome:local exon 219756 219809 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217106 219809 1136 + . alignment_id 1 ; Query Lalb_14628 ; Align 217106 1 804 ; Align 219329 269 111 ; Align 219513 306 156 ; Align 219756 358 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14628 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1014 Query range: 0 -> 375 Target range: 226861 -> 230524 1 : MetThrLysGlnGluIleIleSerSerAsnSerLeuThrArgAspAsnAspTyrLysL : 20 |||! !||||||..! !:! ! ||||||.!!! !!!:|||||||||:!!: MetLysLysGlnArgSerAlaAsnLeuAlaSerLeuAlaThrGluAsnAspTyrGlnG 226862 : ATGAAAAAACAGCGATCGGCGAACCTCGCGTCTCTCGCGACAGAGAACGACTATCAGG : 226919 21 : ysAspValAspLeuSerIleGluTrpAsnArgTrpIleLeuLysProMetGlyValTr : 39 !! !!:!!:!!|||||||||:!!! !|||||||||:!:|||||||||:!:|||:!!|| luTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTr 226920 : AATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTG : 226976 40 : pProArgSerArgHisValSerGlnLeuGluValCysPheAsnTrpLeuIleAsnAla : 58 |||| !|||||| ! !|||!:!:!!! ! !||||||::!||||||!!:..! ! pProSerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPhe 226977 : GCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTC : 227033 59 : ValCysTyrSerLeuIleSerPheValPheAlaProCysTyrLeuTyrValSerLeuG : 78 :!!||||||:!!|||!!:||||||! !!!.!.! !! !! !||||||||| !|||| LeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuG 227034 : CTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAG : 227093 79 : luValGluGluValTyrGluLysLeuLysLeuSerAlaProLeuIlePheCysValMe : 97 |||||:!!! !.!|||.!.! !||||||:!!! !!.!|||:!! !|||! !!.!|| luValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMe 227094 : AGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGAT : 227150 98 : tAlaTyrIleLysTyrTyrSerLeuMetAlaHisThrAsnAspIleArgGluCysIle : 116 |:!! !:!!||||||! !! !|||! ! !||| !:!!||||||! !||||||:!! tSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysVal 227151 : GTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTC : 227207 117 : LysCysIleGluTrpAspTrpArgAsnValSerHisSerGluAspArgGluIleMetV : 136 :!! ! |||:!!|||||||||!:!|||:!!!!!:!! !|||||||||.!.:!:|||| GluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetV 227208 : GAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGG : 227267 137 : alAlaAsnAlaIlePheGlyArgArgLeuValLysIleCysThrPhePheMetPheSe : 155 ||.!! !!||| !!:!||||||!:!|||:!!! |||||||||||||||:!:||||| alThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSe 227268 : TGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAg : 227324 156 : rGlyPheValPhePheTyrIleAlaValProMetSerValGlyLysIleAlaIleGlu : 174 |...||||||||||||||||||!.!||||||!!:!:!!.!|||!..:!!|||! ||| rSerPheValPhePheTyrIleValValProIleAsnAlaGlySerValAlaThrGlu 227325 : tagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAG : 227381 175 : GlyAlaAsnArgThrPheIleProLeuMetTyrProValSerLysLeuIleValAspT : 194 ! !!.!|||!.!!:!!:!|||! !:!! !!:!||| !! !!|||:!!|||!.!|||. AspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIleIleAlaAspV 227382 : GACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACG : 227441 195 : hrGlnArgAsnProSerAsnGlnIlePhePheSerIleGlnPheValGlyGlyIleLe : 213 .!!:: !!:!|||! !|||:!!||||||||||||:!!||||||||| !||||||:! alArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValThrGlyIleVa 227442 : TTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGT : 227498 214 : uMetAsnAlaAsnAlaAlaGlyAlaCysCysLeuAlaValAlaPheAlaValHisAla : 232 !:!!:!!!.! !.!!:!!!.!|||||| !!:!!|||!.! !.!!|||||||||||| lLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAla 227499 : GTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCT : 227555 233 : CysGlyGlnMetGlnValLeuMetCysTrpMetSerHisLeuValAspGlyArgValA : 252 ||||||||||||:!!||||||:!!! !|||:!!.!!||||||:!!|||||||||!.!| CysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGlyArgAlaA 227556 : TGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGCAGAGCGG : 227615 253 : spMetSerAsnThrThrAsnGlyArgIleAlaLysIleValSerGlnHis >>>> T : 269 ||||||||!!.||| !:!!! !|||||||||!..||||||!!!!!.||| spMetSerLysThrLeuAspAspArgIleAlaSerIleValThrHisHis++ 227616 : ATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACCACgt...... : 227668 270 : arget Intron 1 >>>> GluSerArgAlaLysAspMetThrAlaValAlaThrT : 281 582 bp |||!!!!.! !!|||!!::!:||| !!.!!.!|||| ++GluTrpAsnProLysGluLeuThrPheAlaValThrT 227669 : ...................agGAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTT : 228284 282 : yrAlaIleIleLeuValSerLeuIlePheAsnIlePheIlePheCysTyrIleGlyGl : 300 ||:!! :!!|||:!!|||!!!! |||||||||||||||||||||||||||||||| yrSerAlaLeuLeuLeuSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGl 228285 : ACTCAGCGTTACTTTTATCCTTTAccttcaatattttcatattttgttaTATAGGAGA : 228341 301 : uLeuValAlaGluGln >>>> Target Intron 2 >>>> TyrArgLysValG : 310 |:!!|||||||||!!. 1889 bp ! !|||||||||| uIleValAlaGluHis++ ++CysArgLysValG 228342 : AATTGTTGCCGAACACgt.........................agTGCAGAAAAGTCG : 230260 311 : lyGlnMetSerTyrMetIleAspTrpTyrArgLeuProGluAsnThrLysLeuSerVa : 329 ||:!!! !||||||||||||!!:|||||||||||| !!! !|||! !||||||!!! lyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyAsnLysLysLeuCysCy 230261 : GCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTG : 230317 330 : lValLeuIleMetAlaMetSerSerSerProThrAsnLeuThrAlaGlyArgLeuVal : 348 !:!!||||||!!:|||||||||!:!!!! !!|||!!.!!!|||||||||!.!:!!||| sIleLeuIleIleAlaMetSerAsnCysSerThrLysPheThrAlaGlyAsnMetVal 230318 : CATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTACAGCAGGAAACATGGTT : 230374 349 : LysLeuSerLeuValSerPheSerAsp >>>> Target Intron 3 >>>> Va : 358 :!!||||||:!! !!!!||||||||| 67 bp || GluLeuSerValAsnThrPheSerAsp++ ++Va 230375 : GAATTATCCGTAAACACTTTCAGCGACgt.........................agGT : 230471 359 : lMetLysThrSerValAlaPheLeuAsnMetLeuArgThrLeuThrAspThr : 375 |:!:|||||||||:!!!.!||||||||||||||||||||||||||| ||| lValLysThrSerMetGlyPheLeuAsnMetLeuArgThrLeuThr***Thr 230472 : CGTTAAAACGTCCATGGGTTTCTTAAACATGCTACGAACACTGACGTGAACA : 230524 vulgar: Lalb_14628 0 375 . KQ414889.1 226861 230524 + 1014 M 268 804 5 0 2 I 0 578 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226862 230524 1014 + . gene_id 2 ; sequence Lalb_14628 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226862 227665 . + . KQ414889.1 exonerate:protein2genome:local exon 226862 227665 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 227666 227667 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227666 228247 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230403 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230403 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 230404 230405 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 230404 230470 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230469 230470 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230471 230524 . + . KQ414889.1 exonerate:protein2genome:local exon 230471 230524 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226862 230524 1014 + . alignment_id 2 ; Query Lalb_14628 ; Align 226862 1 804 ; Align 228248 269 111 ; Align 230248 306 156 ; Align 230471 358 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14628 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1006 Query range: 12 -> 373 Target range: 212839 -> 215136 13 : ThrArgAspAsnAspTyrLysLysAspValAspLeuSerIleGluTrpAsnArgTrpI : 32 ..!..!||| ! !|||:!!||| |||:::||||||||| !||||||||||||: ValGluAspCysThrTyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpL 212840 : GTCGAAGACTGTACCTACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGC : 212897 33 : leLeuLysProMetGlyValTrpProArgSerArgHisValSerGlnLeuGluValCy : 51 !!|||||||||! !|||:!!|||||| !!.! !:!!||||||! !:!!||| ! euLeuLysProThrGlyLeuTrpProAspLysSerTyrValSerProIleGluLysAs 212898 : TTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAA : 212954 52 : sPheAsnTrpLeuIleAsnAlaValCysTyrSerLeuIleSerPheValPheAlaPro : 70 !.!! ! ! |||:!!|||.!!|||||||||.!!||||||.!!!:!:!! ! !||| nIleAlaArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIlePro 212955 : CATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCG : 213011 71 : CysTyrLeuTyrValSerLeuGluValGluGluValTyrGluLysLeuLysLeuSerA : 90 ||| !|||||||||! !|||!!:||||||...:::::::::::::!!:!!|||! !! CysSerLeuTyrValPheLeuAspValGluAsnIlePheLysGluIleGluLeuPheG 213012 : TGCAGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCG : 213071 91 : laProLeuIlePheCysValMetAlaTyrIleLysTyrTyrSerLeuMetAlaHisTh : 109 .! !!!! !||||||||| ||| ||||||:!!||||||!!: !||| lyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGl 213072 : GCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGG : 213128 110 : rAsnAspIleArgGluCysIleLysCysIleGluTrpAspTrpArgAsnValSerHis : 128 !:!!||||||||| !|||:!!:!! !!!::!!!::||||||!:!|||:!!!!!||| yAspAspIleArgThrCysValGluHisMetLysTyrAspTrpLysAsnIleThrHis 213129 : TGACGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCAC : 213185 129 : SerGluAspArgGluIleMetValAlaAsnAlaIlePheGlyArgArgLeuValLysI : 148 ..!||||||!:!|||||||||!.! !||||||! !||||||!:!|||:!!|||! !| GluGluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrI 213186 : GAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAA : 213245 149 : leCysThrPhePheMetPheSerGlyPheValPhePheTyrIleAlaValProMetSe : 167 |||||.!!|||||||||!:!!!!||||||..!|||!:!!:!:!!!.!||||||!!:|| leCysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuValValProIleSe 213246 : TTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAG : 213302 168 : rValGlyLysIleAlaIleGluGlyAlaAsnArgThrPheIleProLeuMetTyrPro : 186 |!.!! !|||!!:!.! |||! ! !||| !||||||! !! !:!!:!! !||| rAlaAspLysMetValAlaGluAspLeuAsnValThrPheArgGlnMetValValPro 213303 : CGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCT : 213359 187 : ValSerLysLeuIleValAspThrGlnArgAsnProSerAsnGlnIlePhePheSerI : 206 ||||||!:!!!!|||||||||..!!:! !!:!||| !|||:!!|||||||||! !| ValSerArgPheIleValAspValArgTyrSerProValAsnGluIlePhePheLeuI 213360 : GTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGA : 213419 207 : leGlnPheValGlyGlyIleLeuMetAsnAlaAsnAlaAlaGlyAlaCysCysLeuAl : 225 |||||.!!:!!!.!|||:!!|||!!::!!|||! !|||!.!! !|||||| !!||||| leGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAl 213420 : TTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGC : 213476 226 : aValAlaPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetCysTrpMetSer : 244 |!.!!.!||||||||||||||||||||||||||| :!!|||||| !!|||:!!..! aAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGlu 213477 : AGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAA : 213533 245 : HisLeuValAspGlyArgValAspMetSerAsnThrThrAsnGlyArgIleAlaLysI : 264 ||||||:!!|||||||||! !|||||||||!!.!.!..!:!!! !||||||||| | HisLeuIleAspGlyArgGluAspMetSerLysAsnValAspAspArgIleAlaValI 213534 : CATTTGATAGACGGTAGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCA : 213593 265 : leValSerGlnHis >>>> Target Intron 1 >>>> GluSerArgAlaLys : 273 |||||!:!|||||| 1022 bp |||!!!!.!:!!!!. leValAsnGlnHis++ ++GluTrpAsnSerAsn 213594 : TCGTGAACCAGCATgt.........................aggAATGGAATTCGAAC : 214642 274 : AspMetThrAlaValAlaThrTyrAlaIleIleLeuValSerLeuIlePheAsnIleP : 293 :!!:!:|||.!!..!!.!||||||!.!:!::!:! !:!!|||||| |||||||||| AsnLeuThrThrThrValThrTyrValValLeuTyrIleSerLeuThrPheAsnIleP 214643 : AATTTAACAACTACAGTAACTTACGTGGTGTTGTATATCTCTCtcactttcaatattt : 214702 294 : heIlePheCysTyrIleGlyGluLeuValAlaGluGln >>>> Target Intron : 306 |||||||||||||||||||||||||||||:!!|||||| 123 bp heIlePheCysTyrIleGlyGluLeuValSerGluGln++ 214703 : tcatattttgttaCATAGGCGAGCTTGTGTCTGAACAGgt.................. : 214743 307 : 2 >>>> TyrArgLysValGlyGlnMetSerTyrMetIleAspTrpTyrArgLeuP : 322 ! !!:!|||||||||:!!:!:||||||||||||!!:||||||||||||| ++CysLysLysValGlyGluValSerTyrMetIleGluTrpTyrArgLeuP 214744 : .......agTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACCGATTGC : 214912 323 : roGluAsnThrLysLeuSerValValLeuIleMetAlaMetSerSerSerProThrAs : 341 ||! |||! !||||||!!! !:!!||||||||||||||||||!:!||| !!..!!! roGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSerValLy 214913 : CAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATCCGTCAA : 214969 342 : nLeuThrAlaGlyArgLeuValLysLeuSerLeuValSerPheSerAsp >>>> Ta : 358 .!!!|||||||||!.!:!!|||:!!||||||:!! !!!!||||||..! sPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSer++ 214970 : ATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTgt....... : 215022 359 : rget Intron 3 >>>> ValMetLysThrSerValAlaPheLeuAsnMetLeuAr : 370 69 bp |||:!:::!||||||||||||||||||||| !||||| ++ValValArgThrSerValAlaPheLeuAsnAlaLeuAr 215023 : ..................agGTTGTTCGAACATCGGTTGCCTTCTTAAACGCGTTACg : 215125 371 : gThrLeuThr : 373 ||||...::: gThrPheSer 215126 : aacattttca : 215136 vulgar: Lalb_14628 12 373 . KQ414889.1 212839 215136 + 1006 M 256 768 5 0 2 I 0 1018 3 0 2 M 37 111 5 0 2 I 0 119 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212840 215136 1006 + . gene_id 3 ; sequence Lalb_14628 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212840 213607 . + . KQ414889.1 exonerate:protein2genome:local exon 212840 213607 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 213608 213609 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213608 214629 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215019 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215019 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 215020 215021 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 215020 215088 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 215087 215088 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 215089 215136 . + . KQ414889.1 exonerate:protein2genome:local exon 215089 215136 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212840 215136 1006 + . alignment_id 3 ; Query Lalb_14628 ; Align 212840 13 768 ; Align 214630 269 111 ; Align 214864 306 156 ; Align 215089 358 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14628 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 863 Query range: 0 -> 268 Target range: 221309 -> 222113 1 : MetThrLysGlnGluIleIleSerSerAsnSerLeuThrArgAspAsnAspTyrLysL : 20 ||| !|||! !! !! ! !||| !::!||| ! ! !!!: !!|||||||||! MetGlnLysProValThrAspSerLeuSerSerThrArgValGluTyrAspTyrLysT 221310 : ATGCAGAAACCAGTAACAGACAGTCTGTCTTCGACTCGTGTTGAATACGATTACAAGA : 221367 21 : ysAspValAspLeuSerIleGluTrpAsnArgTrpIleLeuLysProMetGlyValTr : 39 !:!!||| ! ||||||:!::!!! !!:!||||||||||||||||||!!:|||||||| hrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleGlyValTr 221368 : CGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTG : 221424 40 : pProArgSerArgHisValSerGlnLeuGluValCysPheAsnTrpLeuIleAsnAla : 58 ||||!.!||| !:!!:!!||| !:!!||| !! !.!! !!||||||||||||!.! pProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLeuIleAsnVal 221425 : GCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAACGTC : 221481 59 : ValCysTyrSerLeuIleSerPheValPheAlaProCysTyrLeuTyrValSerLeuG : 78 ||||||||||||||||||!!!|||:!!!!.!.!|||||| !|||||||||! !|||| ValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyrValIleLeuG 221482 : GTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTCG : 221541 79 : luValGluGluValTyrGluLysLeuLysLeuSerAlaProLeuIlePheCysValMe : 97 ||||||||!!:||||||.!.!:!:!!||||||! !!.!||||||! !||||||||||| luValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysValMe 221542 : AAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGAT : 221598 98 : tAlaTyrIleLysTyrTyrSerLeuMetAlaHisThrAsnAspIleArgGluCysIle : 116 ||||!:!:!!||||||:!! !|||!!: !:!! !||||||||||||||||||||| tAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCysIle 221599 : GGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTGCATC : 221655 117 : LysCysIleGluTrpAspTrpArgAsnValSerHisSerGluAspArgGluIleMetV : 136 :!! !!|||||||||||||||!:!|||:!!!!!:!!|||:!!|||!:!!!:||||||: GluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLysAspIleMetI 221656 : GAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAGGATATAATGA : 221715 137 : alAlaAsnAlaIlePheGlyArgArgLeuValLysIleCysThrPhePheMetPheSe : 155 !!! !||||||||||||||||||||||||:!!! !||||||||||||||||||!:!|| leGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheMetTyrSe 221716 : TAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGTACAG : 221772 156 : rGlyPheValPhePheTyrIleAlaValProMetSerValGlyLysIleAlaIleGlu : 174 |||||||||||||:::|||||||||:!!|||.!.||||||||||||||| !! :!! rGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIleProAlaGln 221773 : TggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGCGCAG : 221829 175 : GlyAlaAsnArgThrPheIleProLeuMetTyrProValSerLysLeuIleValAspT : 194 ! !...||| ||||||||||||:!!:!!!:!||| !!|||!:!!!!|||||||||| AspValAsnValThrPheIleProMetValPheProPheSerArgPheIleValAspT 221830 : GATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTCGATA : 221889 195 : hrGlnArgAsnProSerAsnGlnIlePhePheSerIleGlnPheValGlyGlyIleLe : 213 ||!:! !!:!||| !|||:!!|||.!.||||||:!!|||.!!:!!!.!||| !|| hrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyAlaLe 221890 : CTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTT : 221946 214 : uMetAsnAlaAsnAlaAlaGlyAlaCysCysLeuAlaValAlaPheAlaValHisAla : 232 ||||:!!::!! !.!!:!!!.!|||||| !!|||!.!!.! !||||||||||||||| uMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaValHisAla 221947 : GATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCT : 222003 233 : CysGlyGlnMetGlnValLeuMetCysTrpMetSerHisLeuValAspGlyArgValA : 252 |||||||||||||||||||||||| !!|||:!!!.!||||||:!!:!!||||||!.!| CysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsnGlyArgAlaA 222004 : TGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGCCGGGCGG : 222063 253 : spMetSerAsnThrThrAsnGlyArgIleAlaLysIleValSerGlnHis : 268 |||||!!!|||!.!..!:!! !!||||||||||||||||||!:!|||||| spMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnHis 222064 : ATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAACAC : 222113 vulgar: Lalb_14628 0 268 . KQ414889.1 221309 222113 + 863 M 268 804 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221310 222113 863 + . gene_id 4 ; sequence Lalb_14628 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221310 222113 . + . KQ414889.1 exonerate:protein2genome:local exon 221310 222113 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221310 222113 863 + . alignment_id 4 ; Query Lalb_14628 ; Align 221310 1 804 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14628 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 852 Query range: 14 -> 373 Target range: 208185 -> 212081 15 : AspAsnAspTyrLysLysAspValAspLeuSerIleGluTrpAsnArgTrpIleLeuL : 34 :!!!..:!!||||||!!.|||:!!..!!!!!:!:!!... !||| !|||! |||| AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 35 : ysProMetGlyValTrpProArgSerArgHisValSerGlnLeuGluValCysPheAs : 53 || !!!:||| !||||||||||||! ! !! !||| !|||||| ! !! :! ysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHi 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCA : 208300 54 : nTrpLeuIleAsnAlaValCysTyrSerLeuIleSerPheValPheAlaProCysTyr : 72 ! |||:!!|||!.!:!! !!:!!!!!|||:!!.!!|||:!! ! !||| ! ! sIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGly 208301 : TATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGC : 208357 73 : LeuTyrValSerLeuGluValGluGluValTyrGluLysLeuLysLeuSerAlaProL : 92 :!!!:!!.!! !|||! !||||||!!: !!|||!!::!!||||||:!!!!!::! !!| MetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaL 208358 : ATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTC : 208417 93 : euIlePheCysValMetAlaTyrIleLysTyrTyrSerLeuMetAlaHisThrAsnAs : 111 ||! !|||! !:!!||||||!:!! |||||| ! !:!!! !.!!.! !..!|| euSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAs 208418 : TGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGA : 208474 112 : pIleArgGluCysIleLysCysIleGluTrpAspTrpArgAsnValSerHisSerGlu : 130 |||||||:!!|||:!!:!!! !:!!||| |||||||||||||||..!|||..!||| pIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGlu 208475 : CATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAG : 208531 131 : AspArgGluIleMetValAlaAsnAlaIlePheGlyArgArgLeuValLysIleCysT : 150 ||||||:!!||||||:!!! !||||||! !|||!.!|||!:!|||:!! !|||||| AspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysG 208532 : GACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCG : 208591 151 : hrPhePheMetPheSerGlyPheValPhePheTyrIleAlaValProMetSerValGl : 169 ! !||||||!:!.!!||| :::|||:::|||||||||:!!|||:!:!!! !! lyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAs 208592 : GAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGA : 208648 170 : yLysIleAlaIleGluGlyAlaAsnArgThrPheIleProLeuMetTyrProValSer : 188 !|||:!!!.! ||||||!.!||| !|||!:!! ! !|||:!:||||||||| !! pLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValPro 208649 : CAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCT : 208705 189 : LysLeuIleValAspThrGlnArgAsnProSerAsnGlnIlePhePheSerIleGlnP : 208 |||!!!|||:!!|||..!!:! !!:!||| !|||:!!||||||!:!!!!:!!|||! LysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnL 208706 : AAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAAT : 208765 209 : heValGlyGlyIleLeuMetAsnAlaAsnAlaAlaGlyAlaCysCysLeuAlaValAl : 227 !.:!!..!|||.!!:!! :!! !! !.!!!.!||||||||| !!||||||!.! euLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLe 208766 : TGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCT : 208822 228 : aPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetCysTrpMetSerHisLeu : 246 !.!!|||:!!|||||||||||||||:!!|||:!!||||||! !||||||..! ! ||| uLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeu 208823 : GCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTG : 208879 247 : ValAspGlyArgValAspMetSerAsnThrThrAsnGlyArgIleAlaLysIleValS : 266 ||||||||||||! !||| !..!!!.!.! !:!! !|||:!:|||!!.||||||. ValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleValG 208880 : GTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCGTGG : 208939 267 : erGlnHis >>>> Target Intron 1 >>>> GluSerArgAlaLysAspMet : 275 .!|||||| 1716 bp |||!!! !:!!|||||| luGlnHis++ ++GluTrpAspSerLysAspPro 208940 : AGCAGCATgt.........................agGAATGGGACTCTAAAGACCCT : 210682 276 : ThrAlaValAlaThrTyrAlaIleIleLeuValSerLeuIlePheAsnIlePheIleP : 295 ! !::! ! !|||||| !:!!:!!|||..!|||:!!! |||||||||||||||| IleSerSerLeuThrTyrIleValLeuLeuThrSerValThrPheAsnIlePheIleP 210683 : ATCAGCAGTCTGACGTACATAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATAT : 210742 296 : heCysTyrIleGlyGluLeuValAlaGluGln >>>> Target Intron 2 >>> : 306 |||||||||||||||||:!!:!!||||||||| 999 bp heCysTyrIleGlyGluValLeuAlaGluGln++ 210743 : TCTGTTACATCGGTGAAGTGTTGGCTGAACAggt........................ : 210777 307 : > TyrArgLysValGlyGlnMetSerTyrMetIleAspTrpTyrArgLeuProGluA : 324 !|||||||||:!!! !||||||||||||||||||||||||:!!|||! !! ++ThrValLysValGlyGluLysSerTyrMetIleAspTrpTyrArgMetProGlyL 210778 : .agACAGTAAAAGTTGGAGAAAAGTCTTACATGATCGACTGGTATCGAATGCCAGGAA : 211828 325 : snThrLysLeuSerValValLeuIleMetAlaMetSerSerSerProThrAsnLeuTh : 343 !.! ! ||| !||| !|||!!:!!::!!|||||| !||| !!|||!!.:!!|| ysLysGlyLeuValValProLeuMetIleSerMetSerHisSerThrThrLysIleTh 211829 : AGAAAGGTTTGGTCGTACCCTTGATGATCTCCATGTCACATTCGACCACCAAAATCAC : 211885 344 : rAlaGlyArgLeuValLysLeuSerLeuValSerPheSerAsp >>>> Target I : 358 |||||||!.!|||:!! ||||||:!! !||||||.!!||| 104 rAlaGlyAsnLeuIleValLeuSerIleSerSerPheGlyAsp++ 211886 : CGCTGGCAATCTCATCGTTCTTTCAATCAGTAGTTTCGGTGACgt............. : 211932 359 : ntron 3 >>>> ValMetLysThrSerValAlaPheLeuAsnMetLeuArgThrLe : 372 bp |||!!:||||||||||||.!!!:!||||||||||||||||||!! ++ValIleLysThrSerValThrTyrLeuAsnMetLeuArgThrPh 211933 : ............agGTTATCAAGACTTCGGTAACATACTTGAACATGCTACGAACATT : 212076 373 : uThr : 373 !||| eThr 212077 : CACA : 212081 vulgar: Lalb_14628 14 373 . KQ414889.1 208185 212081 + 852 M 254 762 5 0 2 I 0 1712 3 0 2 M 37 111 5 0 2 I 0 995 3 0 2 M 52 156 5 0 2 I 0 100 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 212081 852 + . gene_id 5 ; sequence Lalb_14628 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208186 208947 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208948 208949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208948 210663 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211929 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 211930 211931 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 211930 212033 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 212032 212033 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 212034 212081 . + . KQ414889.1 exonerate:protein2genome:local exon 212034 212081 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208186 212081 852 + . alignment_id 5 ; Query Lalb_14628 ; Align 208186 15 762 ; Align 210664 269 111 ; Align 211774 306 156 ; Align 212034 358 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14628 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 557 Query range: 12 -> 373 Target range: 284490 -> 287338 13 : ThrArgAspAsnAspTyrLysLysAspValAspLeuSerIleGluTrpAsnArgTrpI : 32 :!!! !|||::: !:: ! ! !||| ! ! !|||:!!:!! !|||||||||. SerThrAspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpP 284491 : TCAACCGATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGT : 284548 33 : leLeuLysProMetGlyValTrpProArgSerArgHisValSerGlnLeuGluValCy : 51 !!|||||||||!!:||||||||||||! !|||! ! !|||!!! |||||| ! heLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIl 284549 : TTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGAT : 284605 52 : sPheAsnTrpLeuIleAsnAlaValCysTyrSerLeuIleSerPheValPheAlaPro : 70 ! !::! !:!!:!! !:!! !!! !! !||||||.!!|||:!!!!.!.!||| eSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValPro 284606 : CAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCG : 284662 71 : CysTyrLeuTyrValSerLeuGlu<->ValGluGluValTyrGluLysLeuLysLeuS : 89 ||| !|||! !..! !|||!!: ..!! !!::!! !! !|||:!!|||:!!! CysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetI 284663 : TGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGA : 284722 90 : erAlaProLeuIlePheCysValMetAlaTyrIleLysTyrTyrSerLeuMetAlaHi : 108 !!.!||||||! !||||||:!!|||||| ||||||||||||! !|||!!::!!!. leGlyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerAr 284723 : TCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCG : 284779 109 : sThrAsnAspIleArgGluCysIleLysCysIleGluTrpAspTrpArg<->AsnVal : 126 ! !..! ! ||| !!:!!|||:!:||| !|||... !|||||| ! !..:!! gGlyGlyLysIleGlyGlnCysValLysAspIleArgAlaAspTrpSerLeuThrLeu 284780 : CGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTT : 284836 127 : SerHisSer<-><->GluAspArgGluIleMetValAlaAsnAlaIlePheGlyArgA : 144 ||||||||| |||:::|||||||||||| !! !!:!|||! !.!!|||||| SerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgS 284837 : TCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGAT : 284896 145 : rgLeuValLysIleCysThrPhePheMetPheSerGlyPheValPhePheTyrIleAl : 163 !|||!.!! .!!|||.!! !||||||!:!|||||| !!|||!:! !! !. erLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrVa 284897 : CTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGT : 284953 164 : aValProMetSerValGlyLysIleAlaIleGluGlyAlaAsnArgThrPheIlePro : 182 !:!!|||:!!!!!..!! !:::! ! !||| ! ! |||..!||| ! ! ! !! lMetProLeuCysThrValArgThrGluIleIleAsp---AsnGluThrValArgSer 284954 : GATGCCGTTGTGCACAGTACGCACGGAGATCATCGAC---AACGAGACCGTGAGATCT : 285007 183 : LeuMetTyrProValSerLysLeuIleValAspThrGlnArgAsnProSerAsnGlnI : 202 ! ! !!:!|||:!!! !::: !:!!:!!||| !!!::! !!:!|||||| !:!!| GlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluI 285008 : CAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGA : 285067 203 : lePhePheSerIleGlnPheValGlyGlyIleLeuMetAsnAlaAsnAlaAlaGlyAl : 221 || ! ! !!!:|||! !:!!!.!!.!.!!:!!!!: !!:!! !.!!!.!||||| leValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAl 285068 : TCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGC : 285124 222 : aCysCysLeuAlaValAlaPheAlaValHisAlaCysGlyGlnMetGlnValLeuMet : 240 |||| !!||||||!.!!.!|||!.!:!!|||!.!|||||||||.!.::!:!!|||:!! aCysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuVal 285125 : TTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTG : 285181 241 : CysTrpMetSerHisLeuValAspGlyArgValAspMetSer<-><->AsnThrThrA : 258 !:!!..! ! |||||||||||| ! !! ! !!.! !:!||| !. ThrLysLeuAspLysLeuValAspGlyValLysGlyArgLysGlyLeuSerThrHisG 285182 : ACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATG : 285241 259 : snGlyArgIleAlaLysIleValSerGlnHis >>>> Target Intron 1 >>> : 269 !. !|||:!:!.! ! |||:!!..!!!.||| 1605 bp luGlnArgLeuGlyAspIleIleGluHisHis-+ 285242 : AACAACGACTGGGAGATATCATCGAGCATCATct........................ : 285276 270 : > GluSerArgAlaLysAspMetThrAlaValAlaThrTyrAlaIleIleLeuValS : 287 |||!!!..! !!..!!:! ! !!.!..! !||||||..!! :!:||||||| ++GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValS 285277 : .agGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTAT : 286933 288 : erLeuIlePheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln : 306 ||!!!! ||||||:!!||||||.!!|||||||||||||||:!!:!!:!!|||||| erPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286934 : CTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt : 286990 307 : >>>> Target Intron 2 >>>> TyrArgLysValGlyGlnMetSerTyrMetI : 316 74 bp ! !||||||||| ! !!!||||||| ++CysLeuLysValGlyLeuSerThrTyrMetI 286991 : .........................agtGCTTAAAAGTCGGCTTGTCAACTTACATGA : 287094 317 : leAspTrpTyrArgLeuProGluAsnThrLysLeuSerValValLeuIleMetAlaMe : 335 ||||||||||||||||||||! !!!.||| ! !.!!:!!:!!||||||.!.|||:! leAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaVa 287095 : TCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGT : 287151 336 : tSerSerSerProThrAsnLeuThrAlaGlyArgLeuValLysLeuSerLeuValSer : 354 !|||!:!||| !!! !!!.||||||||||||!:!:!!:!! ! ||||||||| !||| lSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSer 287152 : GTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGC : 287208 355 : PheSerAsp >>>> Target Intron 3 >>>> ValMetLysThrSerValAl : 364 |||!!!..! 71 bp |||:!!|||:!!:!! !!|| PheCysSer++ ++ValLeuLysSerAlaPheAl 287209 : TTCTGCAGCgt.........................agGTGTTGAAATCGGCATTCGC : 287309 365 : aPheLeuAsnMetLeuArgThrLeuThr : 373 |!:!|||!:!:!:||||||||||||||| aTyrLeuSerLeuLeuArgThrLeuThr 287310 : ATATCTGAGCTTATTACGTACGCTAACC : 287338 vulgar: Lalb_14628 12 373 . KQ414889.1 284490 287338 + 557 M 66 198 G 0 3 M 46 138 G 0 3 M 5 15 G 0 6 M 46 138 G 1 0 M 78 234 G 0 6 M 14 42 5 0 2 I 0 1601 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284491 287338 557 + . gene_id 6 ; sequence Lalb_14628 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284491 285273 . + . KQ414889.1 exonerate:protein2genome:local exon 284491 285273 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 285274 285275 . + . intron_id 1 ; splice_site "CT" KQ414889.1 exonerate:protein2genome:local intron 285274 286878 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287220 287221 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 287220 287290 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287289 287290 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 287291 287338 . + . KQ414889.1 exonerate:protein2genome:local exon 287291 287338 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284491 287338 557 + . alignment_id 6 ; Query Lalb_14628 ; Align 284491 13 198 ; Align 284692 79 138 ; Align 284833 125 15 ; Align 284854 130 138 ; Align 284992 177 234 ; Align 285232 255 42 ; Align 286879 269 111 ; Align 287064 306 156 ; Align 287291 358 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14628 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 545 Query range: 12 -> 373 Target range: 278543 -> 280551 13 : ThrArgAspAsnAspTyrLysLysAspValAspLeuSerIleGluTrpAsnArgTrpI : 32 :!!! !|||::: !::!!.! !||| ! ! !|||:!!:!! !|||||||||. SerThrAspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpP 278544 : TCAACCGATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGT : 278601 33 : leLeuLysProMetGlyValTrpProArgSerArgHisValSerGlnLeuGluValCy : 51 !!|||||||||!!:||||||||||||! !|||! ! !|||!!! |||||| ! heLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIl 278602 : TTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGAT : 278658 52 : sPheAsnTrpLeuIleAsnAlaValCysTyrSerLeuIleSerPheValPheAlaPro : 70 ! !::! !:!!:!! !:!! !!! !! !||||||.!!|||:!!!!.!.!||| eSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValPro 278659 : CAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCG : 278715 71 : CysTyrLeuTyrValSerLeuGlu<->ValGluGluValTyrGluLysLeuLysLeuS : 89 ||| !|||! !..! !|||!!: ..!! !!::!! !! !|||:!!|||:!!! CysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetI 278716 : TGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGA : 278775 90 : erAlaProLeuIlePheCysValMetAlaTyrIleLysTyrTyrSerLeuMetAlaHi : 108 !!.!||||||! !||||||..!|||||| ||||||||||||! !||||||:!!!. leGlyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerAr 278776 : TCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCG : 278832 109 : sThrAsnAspIleArgGluCysIleLysCysIleGluTrpAspTrpArg<-><-><-> : 125 ! !..! ! ||| !!:!!|||:!:!!. !|||... !|||||| ! gGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeu 278833 : CGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTT : 278889 126 : AsnValSerHisSerGluAspArgGluIleMetValAlaAsnAlaIlePheGlyArgA : 144 ::: ! ! ......|||:::|||||||||||| !! !!:!|||! !.!!|||||| SerTyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgS 278890 : TCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGAT : 278949 145 : rgLeuValLysIleCysThrPhePheMetPheSerGlyPheValPhePheTyrIleAl : 163 !|||!.!! .!! !!.!! !||||||!:!|||||| ||||||!:! ! !!. erLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaVa 278950 : CTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGT : 279006 164 : aValProMetSerValGlyLysIleAlaIleGluGlyAlaAsnArgThrPheIlePro : 182 !:!!|||:!!! !!.!! !:::! ! !||| ! ! |||..!||| ! ! ! !! lMetProLeuPheAlaValArgThrGluIleIleAsp---AsnGluThrValArgSer 279007 : GATGCCGTTGTTCGCAGTACGCACGGAGATCATCGAC---AATGAAACGGTGAGATCT : 279060 183 : LeuMetTyrProValSerLysLeuIleValAspThrGlnArgAsnProSerAsnGlnI : 202 ! ! !!:!|||:!!! !::: !:!!:!!||| !!!::! !!:!|||||| !:!!| GlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluI 279061 : CAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGA : 279120 203 : lePhePheSerIleGlnPheValGlyGlyIleLeuMetAsnAlaAsnAlaAlaGlyAl : 221 || ! ! !!!:|||! !:!!!.!!.!.!!:!!:!: !!:!! !.!!!.!||||| leValGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAl 279121 : TCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGC : 279177 222 : aCysCysLeuAlaValAlaPheAlaValHisAlaCysGlyGlnMetGlnValLeuMet : 240 |||| !!||| !!.!!.!|||!.!:!!|||!.!|||||||||.!.::!:!!|||:!! aCysSerLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuVal 279178 : TTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTG : 279234 241 : CysTrpMetSerHisLeuValAspGlyArgValAspMetSer<-><->AsnThrThrA : 258 !:!!..! ! |||:!!|||||| ! !! ! !!.! !:!||| !. ThrLysLeuAspLysLeuIleAspGlyValLysGlyArgLysSerLeuSerThrHisG 279235 : ACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATG : 279294 259 : snGlyArgIleAlaLysIleValSerGlnHis >>>> Target Intron 1 >>> : 269 !. !|||:!:!.! ! |||:!!..!!!.||| 765 bp luGlnArgLeuGlyAspIleIleGluHisHis-+ 279295 : AACAACGACTGGGAGATATCATCGAGCATCATct........................ : 279329 270 : > GluSerArgAlaLysAspMetThrAlaValAlaThrTyrAlaIleIleLeuValS : 287 |||!!!..! !!!.||| ! !!.!..! !|||||| !!!:.!!|||:!!| ++GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleS 279330 : .agGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATAT : 280146 288 : erLeuIlePheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln : 306 |||||! ||||||:!!||||||.!!|||||||||||||||:!!:!!:!!|||||| erLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 280147 : CTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt : 280203 307 : >>>> Target Intron 2 >>>> TyrArgLysValGlyGlnMetSerTyrMetI : 316 74 bp ! ! !||||||||| ! !!!||||||| ++CysLeuLysValGlyValSerThrTyrMetI 280204 : .........................agTGCTTAAAAGTCGGCGTGTCAACTTACATGA : 280307 317 : leAspTrpTyrArgLeuProGluAsnThrLysLeuSerValValLeuIleMetAlaMe : 335 ||||||||||||||||||||! !!!.! ! !! !.!!:!!:!!||||||.!.|||:! leAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaVa 280308 : TCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCGT : 280364 336 : tSerSerSerProThrAsnLeuThrAlaGlyArgLeuValLysLeuSerLeuValSer : 354 !|||!:!||| !!! !!!.||||||||||||!:!:!!:!! ! ||||||||| !||| lSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSer 280365 : GTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGC : 280421 355 : PheSerAsp >>>> Target Intron 3 >>>> ValMetLysThrSerValAl : 364 |||!!!..! 71 bp |||:!:||||||:!! !!|| PheCysSer++ ++ValLeuLysThrAlaPheAl 280422 : TTCTGCAGCgt.........................agGTGTTAAAAACGGCATTCGC : 280522 365 : aPheLeuAsnMetLeuArgThrLeuThr : 373 |!:!|||!:!:!:||||||||||||||| aTyrLeuSerLeuLeuArgThrLeuThr 280523 : ATATCTGAGCTTATTACGTACGCTTACC : 280551 vulgar: Lalb_14628 12 373 . KQ414889.1 278543 280551 + 545 M 66 198 G 0 3 M 46 138 G 0 9 M 51 153 G 1 0 M 78 234 G 0 6 M 14 42 5 0 2 I 0 761 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278544 280551 545 + . gene_id 7 ; sequence Lalb_14628 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278544 279326 . + . KQ414889.1 exonerate:protein2genome:local exon 278544 279326 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 279327 279328 . + . intron_id 1 ; splice_site "CT" KQ414889.1 exonerate:protein2genome:local intron 279327 280091 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280551 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278544 280551 545 + . alignment_id 7 ; Query Lalb_14628 ; Align 278544 13 198 ; Align 278745 79 138 ; Align 278892 125 153 ; Align 279045 177 234 ; Align 279285 255 42 ; Align 280092 269 111 ; Align 280277 306 156 ; Align 280504 358 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14628 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 481 Query range: 6 -> 305 Target range: 259721 -> 261844 7 : IleSerSerAsnSerLeuThrArgAspAsnAspTyrLysLysAspValAspLeuSerI : 26 !!:!!!!:!!!.|||:!! ! !!!:!....!!:!! !.. !! !|||! !|||: MetThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerL 259722 : ATGACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCC : 259779 27 : leGluTrpAsnArgTrpIleLeuLysProMetGlyValTrpProArgSerArgHisVa : 45 !!:!!!::|||||||||.!!|||||||||!!:|||!.!||||||! !||| ! !.. euGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 259780 : TCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCAC : 259836 46 : lSerGlnLeuGluValCysPheAsnTrpLeuIleAsnAlaValCysTyrSerLeuIle : 64 !!!!::!|||||| ! !.!!::! :!!:!:! ! !:!!||||||||| !||| rThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIle 259837 : GACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATA : 259893 65 : SerPheValPheAlaProCysTyrLeuTyrValSerLeuGluValGluGluValTyrG : 84 ! !!..!.!. !|||||| |||:!!:!! !|||||| !|||...:!!||| LeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrM 259894 : CTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACA : 259953 85 : luLysLeuLysLeuSerAlaProLeuIlePheCysValMetAlaTyrIleLysTyrTy : 103 !||| !|||:!! !!.!||||||! ! !!! !!:!:!.!! !|||!!.||| etLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrTh 259954 : TGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACAC : 260010 104 : rSerLeuMetAlaHisThrAsnAspIleArgGluCysIleLysCysIleGluTrpAsp : 122 !!!|||:!! !... !!..||||||! !...|||:!::!! !:!:||| ||| rThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAsp 260011 : AACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGAT : 260067 123 : TrpArgAsnValSerHisSerGluAspArgGluIleMetValAlaAsnAlaIlePheG : 142 ||||||! !:!!!!!.....!:!!|||!:!.!.:!:|||:!! ! !!|||! !|||| TrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheG 260068 : TGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCG : 260127 143 : lyArgArgLeuValLysIleCysThrPhePheMetPheSerGlyPheValPhePheTy : 161 ||||| !:!!!.! !|||.!! !|||:!! .!!||| !!:!!! !|||! lyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCy 260128 : GCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTG : 260184 162 : rIleAlaValProMetSerValGlyLysIleAlaIleGluGlyAlaAsnArgThrPhe : 180 !:!:!.!..! !:!!|||..!! ! !||| !:!:! !..!! !!..|||! ! !! sLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal 260185 : TTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTT : 260241 181 : IleProLeuMetTyrProValSerLysLeuIleValAspThrGlnArgAsnProSerA : 200 !! !||| !! ! !!|||! !||| !:!::!!:!!..!.!. !!:!|||! !| HisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetA 260242 : CATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGA : 260301 201 : snGlnIlePhePheSerIleGlnPheValGlyGlyIleLeuMetAsnAlaAsnAlaAl : 219 ||:!!||| !!.!! !:!:|||||||||..!|||.!!:!!:!!|||:!!!:!.!!!. snGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrVa 260302 : ACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGT : 260358 220 : aGlyAlaCysCysLeuAlaValAlaPheAlaValHisAlaCysGlyGlnMetGlnVal : 238 !||| !! ! !!||||||!.!!.!.!..!!!.!|||||||||||||||:!!.!.||| lGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnVal 260359 : TGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTG : 260415 239 : LeuMetCysTrpMetSerHisLeuValAsp<->GlyArgValAspMetSerAsnThrT : 257 |||||| |||!!:!!!.!.!!!|||||| ..!||| ! ! !!.!!!..!! LeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaP 260416 : CTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTC : 260475 258 : hrAsnGlyArgIleAlaLysIleValSerGlnHis >>>> Target Intron 1 : 269 !! ! !..!|||!.! !||||||..!!!.||| 1223 bp roPheLysGluIleGlyValIleValGluHisHis-+ 260476 : CTTTCAAGGAGATCGGAGTGATTGTCGAACATCATtt..................... : 260513 270 : >>>> GluSerArgAlaLysAspMetThrAlaValAlaThrTyrAlaIleIleLeuV : 286 |||!!! !! !:!!|||!!: ! !:!!:!!|||||| !!!:!!:|||: ++GluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheMetMetLeuI 260514 : ....agGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCATGATGCTGA : 261785 287 : alSerLeuIlePheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl : 305 !!:!!:!! !||||||:!!||||||.!!|||||||||||||||:!!:!!.!!||||| leAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLeuThrGluGl 261786 : TAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACTAACGGAACA : 261842 306 : n : 305 | n 261843 : G : 261844 vulgar: Lalb_14628 6 305 . KQ414889.1 259721 261844 + 481 M 242 726 G 0 3 M 20 60 5 0 2 I 0 1219 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259722 261844 481 + . gene_id 8 ; sequence Lalb_14628 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259722 260510 . + . KQ414889.1 exonerate:protein2genome:local exon 259722 260510 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260511 260512 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 260511 261733 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259722 261844 481 + . alignment_id 8 ; Query Lalb_14628 ; Align 259722 7 726 ; Align 260451 249 60 ; Align 261734 269 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14628 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 478 Query range: 4 -> 358 Target range: 232402 -> 235147 5 : GluIleIleSerSerAsnSerLeuThrArgAspAsnAspTyrLysLysAspValAspL : 24 |||:!!|||! ! !:!!|||! ! ! ! :!! !! !::!||| !!!:! GluValIleMetLeuAspSerSerArgAspThrLeuAsnAlaThrArgAspTyrGluT 232403 : GAGGTAATCATGCTGGACTCGTCCCGCGACACGTTGAACGCTACGCGAGACTACGAGT : 232460 25 : euSerIleGluTrpAsnArgTrpIleLeuLysProMetGlyValTrpProArgSerAr : 43 !||||||:!! !|||||||||.!!|||! !|||||||||!.!||||||||| !! yrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgValTh 232461 : ACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTGTTAC : 232517 44 : gHisValSerGlnLeuGluValCysPheAsnTrpLeuIleAsnAlaValCysTyrSer : 62 !.!...!|||::! !:!! ! .!! |||:!:!.. !..!|||:!!||| rGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHisSer 232518 : AGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCATTCT : 232574 63 : LeuIleSerPheValPheAlaProCysTyrLeuTyrValSerLeuGluValGluGluV : 82 |||!!:! !! ! !.!!!.!|||||| !|||!:!:!! !!!!|||! ! !...: LeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThrSerL 232575 : CTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACGAGCC : 232634 83 : alTyrGluLysLeuLysLeuSerAlaProLeuIlePheCysValMetAlaTyrIleLy : 101 !! ! |||!:!:!!|||! !! !!.!|||:!!! ! !! !:!!|||!.! ! :!:!! euGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluLeuAs 232635 : TAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAATTGAA : 232691 102 : sTyrTyrSerLeuMetAlaHisThrAsnAspIleArgGluCysIleLysCysIleGlu : 120 .|||! !!!!|||:!!||| ! .!!|||||||||! ! ! |||:!::!! :!::!! nTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnValLys 232692 : TTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGTGAAA : 232748 121 : TrpAspTrpArgAsnValSerHisSerGluAspArgGluIleMetValAlaAsnAlaI : 140 !|||||||||||||||!.! ! !!! !!|||!!::!:|||:!! !||||||! GlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsnAlaL 232749 : CAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAACGCGA : 232808 141 : lePheGlyArgArgLeuValLysIleCysThrPhePheMetPheSerGlyPheValPh : 159 !.!!|||||| !:!!!.! |||..!.!!|||! !||| !!!!||| !!! !! ysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValGlySe 232809 : AACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCGGCTC : 232865 160 : ePheTyrIleAlaValProMetSerValGlyLysIleAlaIleGluGlyAlaAsnArg : 178 ! ! ! |||!.!..! !:!: !!:!!.!!! !.!! !:!:! !..!! !!:! ! rAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSerTyr 232866 : CGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAGTTAC : 232922 179 : ThrPheIleProLeuMetTyrProValSerLysLeuIleValAspThrGlnArgAsnP : 198 :!!.!. !|||||| ! ! !! !!! !! ! !:!::!!||||||::! !!:!| SerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPheSerP 232923 : TCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTCAGTC : 232982 199 : roSerAsnGlnIlePhePheSerIleGlnPheValGlyGlyIleLeuMetAsnAlaAs : 217 ||!!!|||:!!|||.!.||| !:!!|||! !:!!..!|||.!!:!!:!!|||:!! roThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnSerVa 232983 : CGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACTCCGT : 233039 218 : nAlaAlaGlyAlaCysCysLeuAlaValAlaPheAlaValHisAlaCysGlyGlnMet : 236 !.!!!.!||||||||| !!|||!.!!.!!.!.!.|||:!!|||||||||||||||:!! lThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGlnLeu 233040 : TACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACAGCTG : 233096 237 : GlnValLeuMetCysTrpMetSerHisLeuValAspGlyArgValAspMetSerAsnT : 256 .!.|||:!!|||! :!!..! !!|||||||||!.!!:!! !.!. !..!!... AsnValValMetSerLysLeuAspAspLeuValAspAlaLysGlyGlnGluGluArgV 233097 : AACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAGGAGGAGAGAG : 233156 257 : hrThrAsnGlyArgIleAlaLysIleValSerGlnHisGluSerArgAlaLysAsp{M : 275 .!.!!.!. !!!:!:!!!.! ||||||..!!!.||| ! !!! ! !!:! !!{: alAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeuArgTyr{L 233157 : TCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTAAGGTAT{T : 233213 276 : e} >>>> Target Intron 1 >>>> {t}ThrAlaValAlaThrTyrAlaIle : 283 !} 1683 bp {:} !||| ! !.!! ! !||| e}++ ++{u}AspAlaTyrArgAlaGlyArgIle 233214 : T}gt.........................ag{A}GACGCTTACAGAGCAGGTAGGATC : 234920 284 : IleLeuValSerLeuIlePheAsnIlePheIlePheCysTyrIleGlyGluLeuValA : 303 !!: !|||!!! !:!: ... ... :!: !! !! ! !. MetLysValThrLysValGlnLeuTyrIleHisIleLeuIleVal***AlaSerAsnT 234921 : ATGAAAGTGACCAAAGTacaattatacatacatatattaattGTGTAAGCATCGAACA : 234980 304 : laGluGlnTyrArgLysValGlyGlnMetSerTyrMetIleAspTrpTyrArgLeuPr : 322 !!:!!|||! !! !|||||||||:!!! !||||||! !!!:|||||||||||||| hrGlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuPr 234981 : CTCAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACC : 235037 323 : oGluAsnThrLysLeuSerValValLeuIleMetAlaMetSerSerSerProThrAsn : 341 |.!.!!.||| |||.!!:!!|||:!!|||!!::!!! !||||||! ! !! !!!. oHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLys 235038 : TCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAA : 235094 342 : LeuThrAlaGlyArgLeuValLysLeuSerLeuValSerPheSerAspVal : 358 :!!|||||||||!:!!!!:!!:!!:!!|||:!!!.!!!!|||.!!|||||| IleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235095 : ATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: Lalb_14628 4 358 . KQ414889.1 232402 235147 + 478 M 270 810 S 0 2 5 0 2 I 0 1679 3 0 2 S 1 1 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232403 235147 478 + . gene_id 9 ; sequence Lalb_14628 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232403 233214 . + . KQ414889.1 exonerate:protein2genome:local exon 232403 233214 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 233215 233216 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233215 234897 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234896 234897 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234898 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234898 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232403 235147 478 + . alignment_id 9 ; Query Lalb_14628 ; Align 232403 5 810 ; Align 234899 276 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14628 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 439 Query range: 15 -> 309 Target range: 256628 -> 258387 16 : AsnAspTyrLysLysAspValAspLeuSerIleGluTrpAsnArgTrpIleLeuLysP : 35 !..:!!!:!|||!.. !! !|||! !|||:!!:!!! !|||||||||.!!||||||| ThrAsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysP 256629 : ACGAATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAAC : 256686 36 : roMetGlyValTrpProArgSerArgHisValSerGlnLeuGluValCysPheAsnTr : 54 ||!!:|||!.!||||||! !||| ! !..!!!! |||||| ! ! !!::: roIleGlyAlaTrpProProSerSerSerThrThrThrLeuGluArgAsnValSerIl 256687 : CTATAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGAT : 256743 55 : pLeuIleAsnAlaValCysTyrSerLeuIleSerPheValPheAlaProCysTyrLeu : 73 :!!:!:||| !|||||||||.!!! !|||! !|||..!!!. !||||||! ||| eValLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIleProCysLeuLeu 256744 : CGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTC : 256800 74 : TyrValSerLeuGluValGluGluValTyrGluLysLeuLysLeuSerAlaProLeuI : 93 :!!|||! !|||!!:! !!!:... !!||| |||:::||| ...|||:!!! HisValPheLeuAspAspAspSerPheTyrMetLysValLysAsnPheGlyProMetS 256801 : CATGTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGA : 256860 94 : lePheCysValMetAlaTyrIleLysTyrTyrSerLeuMetAlaHisThrAsnAspIl : 112 ! !!! :!!!!:::!! ! !!!.||| ! !|||:!! !!!. !!!.||||| erHisTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIl 256861 : GCCATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACAT : 256917 113 : eArgGluCysIleLysCysIleGluTrpAspTrpArgAsnValSerHisSerGluAsp : 131 |||| ! |||:!!:!! !|||||| !|||||||||! |||!!!.....!:!!||| eArgTyrCysValGluHisIleGluThrAspTrpArgMetValArgArgGluLysAsp 256918 : ACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGAT : 256974 132 : ArgGluIleMetValAlaAsnAlaIlePheGlyArgArgLeuValLysIleCysThrP : 151 !:!:!!:!:|||:!! !||||||! !||||||||| !:!!!.!! !.!!|||.!! GlnGlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaA 256975 : CAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAG : 257034 152 : hePheMetPheSerGlyPheValPhePheTyrIleAlaValProMetSerValGlyLy : 170 !.!!||| |||||| |||:::::::!! ! !!:!!!:!..!! !! laIleMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAsnThrGluIl 257035 : CTATCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGAT : 257091 171 : sIleAlaIleGluGlyAlaAsnArgThrPheIleProLeuMetTyrProValSerLys : 189 !||| !:!:! !..!! !!..! !! ! ! ! !||| ! !!|||! !||| eIleHisValGlyAsnGluThrThrIleValArgValLeuProValThrValTyrLys 257092 : AATTCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAG : 257148 190 : LeuIleValAspThrGlnArgAsnProSerAsnGlnIlePhePheSerIleGlnPheV : 209 !:!::!!:!!..!.!.!:!!:!|||!!!|||:!!||| ! !!! !!!:||| ! LysLeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheMetGlnThrT 257149 : AAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTT : 257208 210 : alGlyGlyIleLeuMetAsnAlaAsnAlaAlaGlyAlaCysCysLeuAlaValAlaPh : 228 !..!..!|||:!! !!.!.!!!:!.!!!.!.!! !! ! !!||||||!.!!.!|| rpSerSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAlaAlaValPh 257209 : GGTCGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTT : 257265 229 : eAlaValHisAlaCysGlyGlnMetGlnValLeuMetCysTrpMetSerHisLeuVal : 247 ||||..!||||||! !||||||:!! |||||||||! |||!!:!!!.!.!!!||| eAlaThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGluPheVal 257266 : TGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTG : 257322 248 : AspGlyArgValAspMetSerAsnThrThrAsnGlyArgIleAlaLysIleValSerG : 267 :!!! ! ! !:!! ......||| !!:! ! ! :!::!! !: AsnGluSerArgAsnArgGluLysThrPheProPheLysGlnIleGlyValIleValG 257323 : AATGAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGG : 257382 268 : lnHisGlu >>>> Target Intron 1 >>>> Ser<->ArgAlaLysAspMet : 275 !!|||.!. 874 bp ..! !.!!:::|||::: luHisHis-+ ++GluTrpSerThrGlnAspIle 257383 : AGCATCATtt.........................aggaATGGTCTACGCaagatatt : 258283 276 : ThrAlaValAlaThrTyrAlaIleIleLeuValSerLeuIlePheAsnIlePheIleP : 295 :::::::::||| !!!:||||||:!!|||||| ||||||||||||:::. GlnAsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValI 258284 : caaaatttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaa : 258343 296 : heCysTyrIleGlyGluLeuValAlaGluGlnTyrArgLysVal : 309 ..|||||||||||||||:!!:!!.!!|||||| ! :::::: leCysTyrIleGlyGluIleLeuThrGluGlnValProGluIle 258344 : tatgttACATAGGTGAAATATTAACAGAACAGGTACCagagatt : 258387 vulgar: Lalb_14628 15 309 . KQ414889.1 256628 258387 + 439 M 254 762 5 0 2 I 0 870 3 0 2 M 1 3 G 0 3 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256629 258387 439 + . gene_id 10 ; sequence Lalb_14628 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256629 257390 . + . KQ414889.1 exonerate:protein2genome:local exon 256629 257390 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257391 257392 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 257391 258264 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258387 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258387 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256629 258387 439 + . alignment_id 10 ; Query Lalb_14628 ; Align 256629 16 762 ; Align 258265 270 3 ; Align 258271 271 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14628 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 399 Query range: 6 -> 271 Target range: 266586 -> 267381 7 : IleSerSerAsnSerLeuThrArgAspAsnAspTyrLysLysAspValAspLeuSerI : 26 !!::!!!:!.!.||||||..!! !!!: :!! !!.!.. !|||! !|||: MetAlaAsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerL 266587 : ATGGCTAACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCC : 266644 27 : leGluTrpAsnArgTrpIleLeuLysProMetGlyValTrpProArgSerArgHisVa : 45 !::!!! !|||||||||.!!|||||||||!!:|||!.!||||||! !! ! !! !.. euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuTh 266645 : TGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCAC : 266701 46 : lSerGlnLeuGluValCysPheAsnTrpLeuIleAsnAlaValCysTyrSerLeuIle : 64 !|||:!!|||||| ! ! !!::!!:: !:!:! !!.!:!!||||||!!!! !||| rSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIle 266702 : ATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATA : 266758 65 : SerPheValPheAlaProCysTyrLeuTyrValSerLeuGluValGluGluValTyrG : 84 !|||..! ! !||||||! !!!:!!:!! !||||||! !|||...:!! ! LeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgT 266759 : CTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTA : 266818 85 : luLysLeuLysLeuSerAlaProLeuIlePheCysValMetAlaTyrIleLysTyrTy : 103 !|||:!!|||:!!! !!.!||||||! ! !!! !!:!:!.! |||!!.||| hrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrTh 266819 : CGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACAC : 266875 104 : rSerLeuMetAlaHisThrAsnAspIleArgGluCysIleLysCysIleGluTrpAsp : 122 !!!!|||:!! !!.!!:!!!.!!:||||||! |||:!!:!! !!!::!! ||| rThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAsp 266876 : CACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGAT : 266932 123 : TrpArgAsnValSerHisSerGluAspArgGluIleMetValAlaAsnAlaIlePheG : 142 ||||||! !|||!!!... !!||||||!:!:!!:!:|||:!! !||||||! .!!| TrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleG 266933 : TGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCG : 266992 143 : lyArgArgLeuValLysIleCysThrPhePheMetPheSerGlyPheValPhePheTy : 161 ||||| !:!!!.!! !.!!|||.!! |||||| !!!||| !!:!! !!:!! lyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCy 266993 : GTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTG : 267049 162 : rIleAlaValProMetSerValGlyLysIleAlaIleGluGlyAlaAsnArgThrPhe : 180 !:!: !..! !!.!.!!!:!! !! :!:! !:!!! ..!! !!.!|||! ! ! sValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleVal 267050 : TGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTA : 267106 181 : IleProLeuMetTyrProValSerLysLeuIleValAspThrGlnArgAsnProSerA : 200 !! !||| ! ! !!|||! !||| !!!::!!! ..!.!.! !!:!|||!!!| HisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrA 267107 : CATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGA : 267166 201 : snGlnIlePhePheSerIleGlnPheValGlyGlyIleLeuMetAsnAlaAsnAlaAl : 219 ||:!!||| !!.!! ! !|||||||||..!|||.!!:!!:!!|||:!!!:!!.!!. snGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValVa 267167 : ACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGT : 267223 220 : aGlyAlaCysCysLeuAlaValAlaPheAlaValHisAlaCysGlyGlnMetGlnVal : 238 !||||||! ! !!||||||!.!!.!||||||!.!|||||||||||||||:!!...||| lGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerVal 267224 : CGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTG : 267280 239 : LeuMetCysTrpMetSerHisLeuValAspGlyArgValAspMetSerAsnThrThrA : 258 |||||| |||!!:!.!.!.!!!|||:!! !! ! !|||! !:!!!.!.!..! LeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValC 267281 : CTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTT : 267340 259 : snGlyArgIleAlaLysIleValSerGlnHisGluSerArg : 271 ! ! !! ! :!:||| !:!!|||.!. !||| ysPheAspLysIleGlyValValValGluHisHisLeuArg 267341 : GCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGA : 267381 vulgar: Lalb_14628 6 271 . KQ414889.1 266586 267381 + 399 M 265 795 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266587 267381 399 + . gene_id 11 ; sequence Lalb_14628 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266587 267381 . + . KQ414889.1 exonerate:protein2genome:local exon 266587 267381 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266587 267381 399 + . alignment_id 11 ; Query Lalb_14628 ; Align 266587 7 795 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14628 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 395 Query range: 22 -> 271 Target range: 262846 -> 263593 23 : AspLeuSerIleGluTrpAsnArgTrpIleLeuLysProMetGlyValTrpProArgS : 42 |||! !|||:!::!! |||||||||:!:|||||||||!!:|||!.!||||||! !| AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 43 : erArgHisValSerGlnLeuGluValCysPheAsnTrpLeuIleAsnAlaValCysTy : 61 || ! :!!|||::!:!!||| ! !.!! !::|||:!!! !!.!|||||||| erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 62 : rSerLeuIleSerPheValPheAlaProCysTyrLeuTyrValSerLeuGluValGlu : 80 |!!!|||||| !! !..! !! !|||! ! |||:!!:!! !||||||!.!||| rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 81 : GluValTyrGluLysLeuLysLeuSerAlaProLeuIlePheCysValMetAlaTyrI : 100 .!. !!:!! !||||||:!!:!! !!.!|||||| ! !! !!:!:!.! | AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 101 : leLysTyrTyrSerLeuMetAlaHisThrAsnAspIleArgGluCysIleLysCysIl : 119 ||!!.||| !!!!|||:!! !|||!:!!!.||||||!:!! |||:!::!! !:! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 120 : eGluTrpAspTrpArgAsnValSerHisSerGluAspArgGluIleMetValAlaAsn : 138 ::!! |||||| !!! !|||!!!...! !||||||!:!...||||||:!! !||| lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 139 : AlaIlePheGlyArgArgLeuValLysIleCysThrPhePheMetPheSerGlyPheV : 158 |||! !!:!|||||| !:!!!.! !|||.!!.!!|||||| !!!.!!.!!: AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 159 : alPhePheTyrIleAlaValProMetSerValGlyLysIleAlaIleGluGlyAlaAs : 177 !!! ! ! !:!!!.!..! !!.!.!!!..! ! !|||! ! !! ..!! !!. etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 178 : nArgThrPheIleProLeuMetTyrProValSerLysLeuIleValAspThrGlnArg : 196 !|||! !.!. ! !||| !! !||||||! !||| !|||:!! ..!.!.! ! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 197 : AsnProSerAsnGlnIlePhePheSerIleGlnPheValGlyGlyIleLeuMetAsnA : 216 ||||||!!!|||:!!||||||.!!:!!! ||||||:!!..!|||.!!:!!:!:!.!| AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 217 : laAsnAlaAlaGlyAlaCysCysLeuAlaValAlaPheAlaValHisAlaCysGlyGl : 235 ||!...!!!.!||||||! ! !!:!!.!!!.!!.!||||||! !|||||||||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 236 : nMetGlnValLeuMetCysTrpMetSerHisLeuValAspGlyArgValAspMetSer : 254 |:!!.!.|||||||||! !|||!!:!!!.!.!!!|||:!! ! ! !||| !!:! nLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsn 263484 : GTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAAT : 263540 255 : AsnThrThrAsnGlyArgIleAlaLysIleValSerGlnHisGluSerArg : 271 !!.!.! ! !! !! ! ! :!::!! !:!!|||.!. !||| LysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArg 263541 : AAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGA : 263593 vulgar: Lalb_14628 22 271 . KQ414889.1 262846 263593 + 395 M 249 747 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 263593 395 + . gene_id 12 ; sequence Lalb_14628 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262847 263593 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263593 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262847 263593 395 + . alignment_id 12 ; Query Lalb_14628 ; Align 262847 23 747 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14628 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 381 Query range: 22 -> 271 Target range: 274380 -> 275127 23 : AspLeuSerIleGluTrpAsnArgTrpIleLeuLysProMetGlyValTrpProArgS : 42 |||! !|||:!::!!! !|||||||||.!!|||||||||!!:|||!.!|||||| !: AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuA 274381 : GACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAG : 274438 43 : erArgHisValSerGlnLeuGluValCysPheAsnTrpLeuIleAsnAlaValCysTy : 61 !! !! !..!!!!:!!!!!||| ! !.!!::: |||::: :::||||| laSerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTy 274439 : CCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctA : 274495 62 : rSerLeuIleSerPheValPheAlaProCysTyrLeuTyrValSerLeuGluValGlu : 80 |!!!!!!||| !! !..! !! !||| !! !!!:!!:!!! !|||! !! !||| rCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGlu 274496 : CTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAA : 274552 81 : GluValTyrGluLysLeuLysLeuSerAlaProLeuIlePheCysValMetAlaTyrI : 100 ...:!!:!! !|||||||||||| !!.!|||||| ! !!! !!!!:!.! | SerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyI 274553 : AGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAA : 274612 101 : leLysTyrTyrSerLeuMetAlaHisThrAsnAspIleArgGluCysIleLysCysIl : 119 ||!!.||| !!!!|||:!! !!.!!:!!!.!!:||||||! |||:!::!! !!! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 274613 : TTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACAT : 274669 120 : eGluTrpAspTrpArgAsnValSerHisSerGluAspArgGluIleMetValAlaAsn : 138 ::!! |||||||||! !|||!!!... !!||||||!:!:!!:!:|||:!! !||| tGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsn 274670 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAAC : 274726 139 : AlaIlePheGlyArgArgLeuValLysIleCysThrPhePheMetPheSerGlyPheV : 158 |||! .!!|||||| !:!!!.!! .!!|||.!! |||||| !!!||| !!: AlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 274727 : GCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTC : 274786 159 : alPhePheTyrIleAlaValProMetSerValGlyLysIleAlaIleGluGlyAlaAs : 177 !!! !!:!! !:!: !..! !!.!.!!!:!! !! :!! !:!!! !..!! !!. euCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluTh 274787 : TCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGAC : 274843 178 : nArgThrPheIleProLeuMetTyrProValSerLysLeuIleValAspThrGlnArg : 196 !|||||| ! ! !||| !! ! !!.!! !||| !||||||! ..!.!.! ! rArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThr 274844 : CAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACG : 274900 197 : AsnProSerAsnGlnIlePhePheSerIleGlnPheValGlyGlyIleLeuMetAsnA : 216 !:!|||!!!|||:!!||| !!.!!:!! |||||||||..!|||.!!:!!:!!|||: SerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnS 274901 : AGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATT : 274960 217 : laAsnAlaAlaGlyAlaCysCysLeuAlaValAlaPheAlaValHisAlaCysGlyGl : 235 !!!:!|||!.!||||||! ! !!||||||!.!!.!||||||!.!||||||! !||||| erSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGl 274961 : CGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCA : 275017 236 : nMetGlnValLeuMetCysTrpMetSerHisLeuValAspGlyArgValAspMetSer : 254 |:!!...||||||||| |||!!:!!!.!.!!!|||:!! ! ! !|||...::: nLeuSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsn 275018 : GTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaat : 275074 255 : AsnThrThrAsnGlyArgIleAlaLysIleValSerGlnHisGluSerArg : 271 ......... ! ! :!:||| !:!!|||.!. !||| LysAsnValTyrPheSerGluIleGlyValValValGluHisHisLeuArg 275075 : aaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGG : 275127 vulgar: Lalb_14628 22 271 . KQ414889.1 274380 275127 + 381 M 249 747 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274381 275127 381 + . gene_id 13 ; sequence Lalb_14628 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274381 275127 . + . KQ414889.1 exonerate:protein2genome:local exon 274381 275127 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274381 275127 381 + . alignment_id 13 ; Query Lalb_14628 ; Align 274381 23 747 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14628 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 377 Query range: 122 -> 358 Target range: 304425 -> 305783 123 : TrpArgAsnValSerHisSerGluAspArgGluIleMetValAlaAsnAlaIlePheG : 142 !::..!.!.|||..! ! !..!|||||||||!!:|||:!! ! !!!.! !.!.| TyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetG 304426 : TATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGG : 304483 143 : lyArgArgLeuValLysIleCysThrPhePheMetPheSerGlyPheValPhePheTy : 161 |||||!.!|||..!! !||||||.!!.!.||||||!:!!!!||| !..!.!!!:!:! lyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHi 304484 : GTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCA : 304540 162 : rIleAlaValProMetSerValGlyLysIleAlaIleGluGlyAlaAsnArgThrPhe : 180 !! !.!:!!! !.!.:!!..!|||! ! ! :!:!!:! ! !|||||||||.!! sThrValMetGlnPheAlaThrGlyThrTyr---ValAspGluTyrAsnArgThrIle 304541 : CACGGTCATGCAGTTCGCGACCGGAACGTAT---GTGGATGAGTATAATCGTACGATT : 304594 181 : IleProLeuMetTyrProValSerLysLeuIleValAspThrGlnArgAsnProSerA : 200 ! !||||||:!:||||||..!! !!.. !:!! !!|||..!|||! !!:!|||! ! LysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIleT 304595 : AAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTT : 304654 201 : snGlnIlePhePheSerIleGlnPheValGlyGlyIleLeuMetAsnAlaAsnAlaAl : 219 !!:!!:!: !!!:!! !:!!!!.! !:!! !!||| !:!!!!: !!:!!! .!!|| yrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThrAl 304655 : ACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGC : 304711 220 : aGlyAlaCysCysLeuAlaValAlaPheAlaValHisAlaCysGlyGlnMetGlnVal : 238 |||||||||| ! ||||||!.! !||||||..!|||||||||||||||!!:.!.:!! aGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIle 304712 : TGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATC : 304768 239 : LeuMetCysTrpMetSerHisLeuValAspGlyArgValAspMetSerAsnThrThrA : 258 :!!|||! ! ! :!!.!! !!||||||:!!.!!!:! |||::! ! !: ValMetSerArgLeuGlyAspLeuValAsnSerLys------GluSerSerAspLeuA 304769 : GTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAA------GAATCATCTGATTTAG : 304822 259 : snGlyArgIleAlaLysIleValSerGlnHis >>>> Target Intron 1 >>> : 269 !! !|||:!! !:!!||||||..!!!.||| 246 bp spLysArgLeuIleGluIleValGluHisHis-+ 304823 : ATAAACGATTAATAGAAATTGTTGAGCATCATtt........................ : 304857 270 : > GluSerArgAlaLysAspMetThrAlaValAlaThrTyrAlaIleIleLeuValS : 287 !!:!!!..!::!!..:!!! ..!::!:!!.!!||||||.!!:!::!!|||:!!| ++AspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValLeuLeuIleS 304858 : .agGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGTTACTGATAT : 305155 288 : erLeuIlePheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln : 306 ||:!!! !|||||||||||||||!!.|||||||||||||||:!!:!! !|||:!! erValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMetGluLys++ 305156 : CTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTATGGAAAAGgt : 305212 307 : >>>> Target Intron 2 >>>> TyrArgLysValGlyGlnMetSerTyrMetI : 316 413 bp !!!!!..|||||| ! !!!!:!|||| ++SerSerSerValGlyLeuSerCysPheMetI 305213 : .........................agAGCAGTAGCGTTGGATTATCCTGTTTTATGA : 305655 317 : leAspTrpTyrArgLeuProGluAsnThrLysLeuSerValValLeuIleMetAlaMe : 335 ||..!||||||!.!|||||| !!.|||! !! !.!!:!!:!!||||||!!:||||| leSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleLeuIleIleAlaMe 305656 : TCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTTTAATCATTGCCAT : 305712 336 : tSerSerSerProThrAsnLeuThrAlaGlyArgLeuValLysLeuSerLeuValSer : 354 |||||||!:!|||.!!!!.:!!!:!||||||!:!:!!||| ! ||||||||| !!!! tSerSerAsnProAlaLysIleSerAlaGlyLysValValAspLeuSerLeuSerThr 305713 : GTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTATCTTTATCCACA : 305769 355 : PheSerAspVal : 358 |||.!!:!!||| PheGlyAsnVal 305770 : TTTGGAAACGTG : 305783 vulgar: Lalb_14628 122 358 . KQ414889.1 304425 305783 + 377 M 49 147 G 1 0 M 78 234 G 2 0 M 16 48 5 0 2 I 0 242 3 0 2 M 37 111 5 0 2 I 0 409 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304426 305783 377 + . gene_id 14 ; sequence Lalb_14628 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 304426 304854 . + . KQ414889.1 exonerate:protein2genome:local exon 304426 304854 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 304855 304856 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 304855 305100 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 0 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304426 305783 377 + . alignment_id 14 ; Query Lalb_14628 ; Align 304426 123 147 ; Align 304573 173 234 ; Align 304807 253 48 ; Align 305101 269 111 ; Align 305625 306 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14628 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 326 Query range: 8 -> 305 Target range: 289690 -> 291479 9 : SerAsnSerLeuThrArgAspAsnAspTyrLysLysAspValAspLeuSerIleGluT : 28 |||!:!..!! ! !! !:!!:!! !|||:!!! !|||:!! !! !!!!.!!|||! SerSerAspArgProSerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluL 289691 : AGCAGCGATCGTCCGTCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAAT : 289748 29 : rpAsnArgTrpIleLeuLysProMetGlyValTrpPro<->ArgSerArgHisValSe : 46 !!.!|||||||||||||||!!:|||:!!!::||| !! !!!!!.!!.!|| euCysHisTrpIleLeuLysProIleGlyMetTyrProPheValPheSerArgAlaSe 289749 : TATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAG : 289805 47 : rGlnLeuGluValCysPheAsnTrpLeuIleAsnAlaValCysTyrSerLeuIleSer : 65 |::!! !||| ! ::: !|||:!:! ! !||||||! !|||:!!:!!..! rArgArgGluArgThrAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGln 289806 : CAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAG : 289862 66 : PheValPheAlaProCysTyrLeuTyrValSerLeuGluValGluGluValTyrGluL : 85 |||:!!.!.!.!|||! ! !! !:!!||| !!!!...! !.!.!!::!! !! ! PheIleIleValProPheSerHisHisValLeuPheSerAspAsnAspMetAsnThrP 289863 : TTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGT : 289922 86 : ysLeuLysLeuSerAlaProLeuIlePheCysValMetAlaTyrIleLysTyrTyrSe : 104 :!!||| ! !!.!||||||! ||||||:!!! .!!!:!.!!||||||! !! heValLysAsnLeuGlyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTy 289923 : TCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTA : 289979 105 : rLeuMetAlaHisThrAsnAspIleArgGluCysIleLysCysIleGluTrpAspTrp : 123 !!!!! ! ! !:::! ||| !!...|||:!:||| !|||||| ! |||||| rPheSerMetLysGlySerAlaIleGlyArgCysValLysHisIleGluArgAspTrp 289980 : CTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGG : 290036 124 : ArgAsnValSerHisSerGluAspArgGluIleMetValAlaAsnAlaIlePheGlyA : 143 !:!! :!! !! !!..!!!: !!|||! ||||||:!! ! !!!.!! .!..!!| LysMetLeuArgAspGluAspHisArgValIleMetLeuArgTyrValThrMetSerA 290037 : AAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCC : 290096 144 : rgArgLeuValLysIleCysThrPhePheMetPheSerGlyPheValPhePheTyrIl : 162 ||!.!|||:!!|||:!:|||.!!.!!|||:!!!:!! !||| !:!!! !!:! !!! rgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnTh 290097 : GGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACAC : 290153 163 : eAlaValProMetSerValGlyLysIleAlaIleGluGlyAlaAsnArgThrPheIle : 181 !!.!:!!|||:!! !!..!|||! ::!:!:.!.||| ||| !|||.!!! ! rValIleProLeu---PheSerLysLysSerValAsnGly---AsnValThrIleArg 290154 : TGTCATACCGTTG---TTCTCGAAGAAGAGCGTGAACGGT---AACGTGACTATCAGA : 290204 182 : ProLeuMetTyrProValSerLysLeuIleValAspThrGlnArgAsnProSerAsnG : 201 ||||||! ||||||! !! !:!! !.!! !!|||..!|||!:!!:!|||:!! !!: ProLeuThrTyrProGlyTyrGluGluPhePheAspValGlnLysSerProAlaTyrG 290205 : CCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACG : 290264 202 : lnIlePhePheSerIleGlnPheValGlyGlyIleLeuMetAsnAlaAsnAlaAlaGl : 220 !!||| !!|||!!!!!:!!.! !||| !! !!!::!!! ! !! !.!! !!. luIleValPheCysMetHisCysValTyrValMetIleThrAlaAsnIleThrMetAl 290265 : AGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGC : 290321 221 : yAlaCysCysLeuAlaValAlaPheAlaValHisAlaCysGlyGlnMetGlnValLeu : 239 !|||! ! !!|||.!!..! !||||||..!|||.!!|||||||||!!::!!:!!! ! aAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGlnIleLysIleGln 290322 : GGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAA : 290378 240 : MetCysTrpMetSerHisLeuValAspGlyArgValAspMetSerAsnThrThrAsnG : 259 ! ! !!:!!..! !!|||..! ! !! !!:!! :!!..!!!. !..!!:!! ThrThrArgLeuGluAspLeuThrLysArgGlyMetLeuLeuGluLysGlyValSerA 290379 : ACGACGCGGCTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTG : 290438 260 : lyArgIleAlaLysIleValSerGlnHis{G} >>>> Target Intron 1 >>> : 269 !|||:!:||| :!!|||||| |||{|} 901 bp spArgLeuAlaValValValSerGlyHis{G}-- 290439 : ATCGTTTGGCGGTTGTTGTGAGCGGTCAC{G}tg........................ : 290471 270 : > {lu}SerArgAlaLysAspMetThrAlaValAlaThrTyrAlaIleIleLeuVal : 286 {||}!!!..!::!!..||| !! !!.!:!! !||||||!.!! !:!!|||..! -+{lu}TrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThr 290472 : .gg{AA}TGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACT : 291420 287 : SerLeuIlePheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln : 305 |||!!!! !|||||||||.!.||||||||||||:!!|||||||||:!! !! !||| SerPheThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln 291421 : TCTTTCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAG : 291479 vulgar: Lalb_14628 8 305 . KQ414889.1 289690 291479 + 326 M 32 96 G 0 3 M 126 378 G 1 0 M 8 24 G 1 0 M 92 276 S 0 1 5 0 2 I 0 897 3 0 2 S 1 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289691 291479 326 + . gene_id 15 ; sequence Lalb_14628 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 289691 290468 . + . KQ414889.1 exonerate:protein2genome:local exon 289691 290468 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 290469 290470 . + . intron_id 1 ; splice_site "TG" KQ414889.1 exonerate:protein2genome:local intron 290469 291369 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 291368 291369 . + . intron_id 0 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 291370 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291370 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289691 291479 326 + . alignment_id 15 ; Query Lalb_14628 ; Align 289691 9 96 ; Align 289790 41 378 ; Align 290168 168 24 ; Align 290192 177 276 ; Align 291372 270 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14628 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 234 Query range: 267 -> 361 Target range: 224320 -> 224667 268 : HisGluSerArgAlaLysAspMetThrAlaValAlaThrTyrAlaIleIleLeuValS : 287 !..||| :::... !!:!:|||::!!.!!.!|||||| !|||:!!|||:!!| GlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetS 224321 : CaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGT : 224378 288 : erLeuIlePheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlnTy : 306 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| erLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlnVa 224379 : CtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggt : 224435 307 : rArg{L} >>>> Target Intron 1 >>>> {ys}ValGlyGlnMetSerTyr : 314 :::{|} 65 bp {||}:::||||||:!!|||||| lLys{L}-+ +-{ys}IleGlyGlnValSerTyr 224436 : gaaa{a}at.........................aa{aa}attggacaAGTGTCGTAC : 224524 315 : MetIleAspTrpTyrArgLeuProGluAsnThrLysLeuSerValValLeuIleMetA : 334 ||||||||||||||||||||| !!! !|||! !||||||!!! !:!!||||||!!:| MetIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleA 224525 : ATGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCG : 224584 335 : laMetSerSerSerProThrAsnLeuThrAlaGlyArgLeuValLysLeuSerLeuVa : 353 ||||||||!:!||| !!! !!!.||||||||||||!.!:!!|||:!!|||!!!|||.. laMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuTh 224585 : CGATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAAC : 224641 354 : lSerPheSerAspValMetLysThr : 361 !!!!|||.!!||||||! ! ||| rThrPheGlyAspValSerIleThr 224642 : CACTTTCGGTGACGTAAGTATCACA : 224667 vulgar: Lalb_14628 267 361 . KQ414889.1 224320 224667 + 234 M 40 120 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224321 224667 234 + . gene_id 16 ; sequence Lalb_14628 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224321 224441 . + . KQ414889.1 exonerate:protein2genome:local exon 224321 224441 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224442 224443 . + . intron_id 1 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local intron 224442 224506 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224505 224506 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 224507 224667 . + . KQ414889.1 exonerate:protein2genome:local exon 224507 224667 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224321 224667 234 + . alignment_id 16 ; Query Lalb_14628 ; Align 224321 268 120 ; Align 224509 309 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14628 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 223 Query range: 4 -> 238 Target range: 194114 -> 194807 5 : GluIleIleSerSerAsnSerLeuThrArgAspAsnAspTyrLysLysAspValAspL : 24 ||| |||:::......||| ! !|||:!! !:!!|||||| !|||..!!!:! GluGluIleAlaLysLysSerAsnTyrArgAsnValAsnTyrLysLeuAspThrGluT 194115 : gaagaaatcgcgaagaaatcgAATTACCGCAACGTCAATTACAAATTGGACACCGAGT : 194172 25 : euSerIleGluTrpAsnArgTrpIleLeuLysProMetGlyValTrpProArgSerAr : 43 !:!!:!!..! !:! !:!!|||! !|||!!:|||:!!|||||||||..! yrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProArgGluAs 194173 : ACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAAGGGAGGA : 194229 44 : gHisValSerGlnLeuGluValCysPheAsnTrpLeuIleAsnAlaValCysTyrSer : 62 ! !:!! !!.!. !! ! ||| ! !!.!!.!||| !!:!:!! pSerLeuArgAspArgValArgLeuPhe------AlaGlnThrGlyValValPheAla 194230 : TTCTCTTCGCGACAGAGTCCGACTGTTC------GCTCAAACTGGCGTGGTCTTCGCT : 194280 63 : LeuIleSerPheValPheAlaProCysTyrLeuTyrValSerLeuGluValGluGluV : 82 |||!!:!!!|||:!!.!.!.!||| ! :!!|||..!! !!!!!!: !|||!!:: LeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCysGluAspL 194281 : TTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAGGATC : 194340 83 : alTyrGluLysLeuLysLeuSerAlaProLeuIlePheCysValMetAlaTyrIleLy : 101 !! ..! ! :!!|||:!!! !||| !!! !:!:||| !!:!!:!!||| !||||| euThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleIleLy 194341 : TGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCATCAA : 194397 102 : sTyrTyrSerLeuMetAlaHisThrAsnAspIleArgGluCysIleLysCysIleGlu : 120 |!:!!::!!!:!!!!:!.!:!!! !!!.!!:|||||| |||:!: ! !!:||| sPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGluMetGlu 194398 : GTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGATGGAG : 194454 121 : TrpAspTrpArgAsnValSerHisSerGluAspArgGluIleMetValAlaAsnAlaI : 140 !.!.!::|||:!!|||..! !..!|||||||||:!!:!:|||..! ! !|||! ThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsnCysAlaL 194455 : ACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGCGCGA : 194514 141 : lePheGlyArgArgLeuValLysIleCysThrPhePheMetPheSerGlyPheValPh : 159 !.!!|||||| !!!!..!! :!:! ! ! .!! !:!.!!||| !:!! ysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaLeuPr 194515 : AAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTTTGCC : 194571 160 : ePheTyrIleAlaValProMetSerValGlyLysIleAlaIleGluGlyAlaAsnArg : 178 !:!:!!||| !:!!|||:!!! ! !! !!:!|||!.!! |||! ! |||!!! oTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGluAsp---AsnSer 194572 : GTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGAT---AACAGT : 194625 179 : ThrPheIleProLeuMetTyrProValSerLysLeuIleValAspThrGlnArgAsnP : 198 ||| ||||||||| ||| ! !!:! ! :!!.!! !!! ! !:!! !:::| ThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAspSerP 194626 : ACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGACTCGC : 194685 199 : roSerAsnGlnIlePhePheSerIleGlnPheValGlyGlyIleLeuMetAsnAlaAs : 217 ||! ! !!:!!||| ||| ! |||.!.:!! !.!!! !:!!!!: :!!!. roIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuSerTh 194686 : CGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGTCGAC : 194742 218 : nAlaAlaGlyAlaCysCysLeuAlaValAlaPheAlaValHisAlaCysGlyGlnMet : 236 . !..!||| !! ! !!|||!.!!.!.!!.!! !:!!|||..!|||||| !.!. rAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGlyLeuPhe 194743 : GAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTTGTTC : 194799 237 : GlnVal : 238 :!!||| GluVal 194800 : GAAGTG : 194807 vulgar: Lalb_14628 4 238 . KQ414889.1 194114 194807 + 223 M 48 144 G 2 0 M 121 363 G 1 0 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194115 194807 223 + . gene_id 17 ; sequence Lalb_14628 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194115 194807 . + . KQ414889.1 exonerate:protein2genome:local exon 194115 194807 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 194115 194807 223 + . alignment_id 17 ; Query Lalb_14628 ; Align 194115 5 144 ; Align 194259 55 363 ; Align 194622 177 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14628 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 210 Query range: 180 -> 268 Target range: 202682 -> 202945 181 : IleProLeuMetTyrProValSerLysLeuIleValAspThrGlnArgAsnProSerA : 200 :!! !:!!! !!:! !! !!||| !!!!|||:!!|||..!::! !!:!||| !| LeuSerValThrPheSerPheSerGlyPheIleIleAspValArgTyrSerProValA 202683 : CTTAGTGTGACGTTCTCCTTCTCAGGATTTATCATTGATGTTAGATACAGTCCTGTGA : 202740 201 : snGlnIlePhePheSerIleGlnPheValGlyGlyIleLeuMetAsnAlaAsnAlaAl : 219 ||:!!|||||||||||||||!:!.!!|||!.!! !||||||!!::!!!.! !.!!!. snGluIlePhePheSerIleArgIleValAlaValIleLeuIleHisGlyValThrVa 202741 : ACGAGATCTTCTTCTCGATTCGAATCGTAGCTGTCATCCTAATTCACGGTGTCACTGT : 202797 220 : aGlyAlaCysCysLeuAlaValAlaPheAlaValHisAlaCysGlyGlnMetGlnVal : 238 !|||||||||||||||.!!!.! !||||||||||||! !||||||||||||.!.||| lGlyAlaCysCysLeuThrAlaLeuPheAlaValHisAspCysGlyGlnMetAspVal 202798 : AGGAGCTTGTTGCTTGACAGCGTTGTTTGCGGTTCACGATTGCGGCCAGATGGACGTT : 202854 239 : LeuMetCysTrpMetSerHisLeuValAspGlyArgValAspMetSer--AsnThrTh : 257 ||||||..!|||:!!..!||||||:!!||||||||| !|||||||||##||| .. LeuMetAlaTrpLeuGluHisLeuMetAspGlyArgSerAspMetSer##Asn---Va 202855 : TTGATGGCCTGGCTGGAACATTTGATGGATGGTCGTTCGGATATGAGTAAAAT---GT : 202910 258 : rAsnGlyArgIleAlaLysIleValSerGlnHis : 268 !|||||||||!!:!.!! ||||||||||||||| lAsnGlyArgMetValThrIleValSerGlnHis 202911 : GAATGGCAGAATGGTGACCATCGTGAGCCAACAC : 202945 vulgar: Lalb_14628 180 268 . KQ414889.1 202682 202945 + 210 M 74 222 F 0 2 M 1 3 G 1 0 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202683 202945 210 + . gene_id 18 ; sequence Lalb_14628 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202683 202945 . + . KQ414889.1 exonerate:protein2genome:local exon 202683 202945 . + . insertions 0 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local similarity 202683 202945 210 + . alignment_id 18 ; Query Lalb_14628 ; Align 202683 181 222 ; Align 202907 255 3 ; Align 202910 257 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14628 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 197 Query range: 272 -> 358 Target range: 277383 -> 277713 273 : LysAspMetThrAlaValAlaThrTyrAlaIleIleLeuValSerLeuIlePheAsnI : 292 !..|||:!: !.!!:!!.!!|||:!! !!!:||||||:!!|||:!: ||||||| SerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerMetCysPheAsnI 277384 : AGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCATgtgtttcaaca : 277441 293 : lePheIlePheCysTyrIleGlyGluLeuValAlaGluGln >>>> Target Int : 306 ||||| ! ! |||||||||||||||:!!:!!.!!|||||| 72 bp lePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277442 : tttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt............... : 277485 307 : ron 1 >>>> TyrArgLysValGlyGlnMetSerTyrMetIleAspTrpTyrArgL : 321 ! !!:!|||||||||:!!:!! !||||||! :!!|||||| !| ++CysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrL 277486 : ..........agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATT : 277600 322 : euProGluAsnThrLysLeuSerValValLeuIleMetAlaMetSerSerSerProTh : 340 |||||!!:!!. !! |||!:!:!!:!!||||||!!::!!! |||||| euProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIl 277601 : TACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaat : 277657 341 : rAsnLeuThrAlaGlyArgLeuValLysLeuSerLeuValSerPheSerAspVal : 358 ...:::|||||||||:::|||:::::::::|||:!! !!!!|||.!!|||||| eLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspVal 277658 : taaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTA : 277713 vulgar: Lalb_14628 272 358 . KQ414889.1 277383 277713 + 197 M 33 99 5 0 2 I 0 68 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277384 277713 197 + . gene_id 19 ; sequence Lalb_14628 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277384 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277384 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277384 277713 197 + . alignment_id 19 ; Query Lalb_14628 ; Align 277384 273 99 ; Align 277555 306 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14628 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 188 Query range: 268 -> 358 Target range: 206050 -> 206401 269 : GluSerArgAlaLysAspMetThrAlaValAlaThrTyrAlaIleIleLeuValSerL : 288 |||!!!..! !!!.:!!! ||||||||| !..!||| !! :!:! !:!!|||! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 289 : euIlePheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln >>> : 306 !! !||| !:!!||||||.!.||||||||||||:!!|||:!! !!!:||| ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 307 : > Target Intron 1 >>>> TyrArgLysValGlyGlnMetSerTyrMetIleA : 317 81 bp !!!.! |||||| !! |||! !! !:!:: ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 318 : spTrpTyrArgLeuProGluAsnThrLysLeuSerValValLeuIleMetAlaMetSe : 336 !!|||||||||||||||.!.!.. ! !! !|||:!!:!!||||||!!:|||||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 337 : rSerSerProThrAsnLeuThrAlaGlyArgLeuValLysLeuSerLeuValSerPhe : 355 |!:!! !|||! !!!.||||||||||||!:!:!! !!:!!:!!||||||!.!|||||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 356 : SerAspVal : 358 !!!|||||| ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: Lalb_14628 268 358 . KQ414889.1 206050 206401 + 188 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 188 + . gene_id 20 ; sequence Lalb_14628 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 188 + . alignment_id 20 ; Query Lalb_14628 ; Align 206051 269 111 ; Align 206243 306 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14628 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 23 -> 134 Target range: 200538 -> 200878 24 : LeuSerIleGluTrpAsnArgTrpIleLeuLysProMetGlyValTrpProArgSerA : 43 :!!!!!|||:!!||||||||||||||||||||| !!|||!.!:!!||| ! !!.! ValCysIleGlnTrpAsnArgTrpIleLeuLysSerMetAlaLeuTrpPheAspLysS 200539 : GTTTGCATACAGTGGAATCGTTGGATCTTGAAATCAATGGCTTTGTGGTTTGACAAAT : 200596 44 : rgHisValSerGlnLeuGluVal-CysPheAsnTrpLeuIleAsnAlaValCysTyrS : 62 !:!!:!!|||! !:!!||| !# !!:!!.! !!||||||!:!|||||||||!! . erAsnIleSerProValGluLys#AsnTyrThrArgLeuIleSerAlaValCys***G 200597 : CCAACATTTCACCGGTCGAGAAATAACTACACTCGGCTAATCAGTGCCGTTTGTTAAG : 200654 63 : erLeuIleSerPheValPheAlaProCysTyrLeuTyrValSerLeuGluValGluGl : 81 !!|||!!:...::: ... ||| !|||:!!|||! !|||!!:||||||.! lyLeuMetGlyTyrPheLeuIleLeuCysSerLeuHisValPheLeuAspValGluAs 200655 : GATTGATGggttactttttaatattatgcAGTTTACACGTGTTTCTTGACGTAGAAAA : 200711 82 : uValTyrGluLysLeuLysLeuSerAlaProLeuIle<->PheCysValMetAlaTyr : 99 .:!! !:!!|||:!!||||||! !!.!||||||:!! .!!|||:!! .!! ! nIleLeuLysLysIleLysLeuPheValProLeuValLeuLeuCysLeuAlaThrIle 200712 : TATACTTAAAAAGATTAAATTGTTTGTTCCCCTAGTACTACTTTGCTTGGCTACGATT : 200768 100 : IleLysTyrTyrSerLeuMetAlaHisThrAsnAspIleArgGluCysIleLysCysI : 119 :!:|||! !:!!! !! !:!: !||| !:!!|||! ! ! !||| !:!! !| LeuLysCysHisLeuSerValLeuHisAspAspAspThrTyrThrCysGlyGluHisI 200769 : TTGAAGTGTCATTTGTCGGTACTTCATGATGACGATACTTACACGTGTGGCGAGCATA : 200828 120 : leGluTrpAspTrpArgAsn<->ValSerHisSerGluAspArgGluIle : 134 ||:!!|||!!:|||||| !! |||!!!|||..!||||||::::::||| leLysTrpGluTrpArgTyrCysValThrHisAspGluAspLysLysIle 200829 : TAAAATGGGAGTGGAGGTATTGTGTCACGCACGACgaggataaaaaaatt : 200878 vulgar: Lalb_14628 23 134 . KQ414889.1 200538 200878 + 178 M 27 81 F 0 1 M 43 129 G 0 3 M 32 96 G 0 3 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 200539 200878 178 + . gene_id 21 ; sequence Lalb_14628 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 200539 200878 . + . KQ414889.1 exonerate:protein2genome:local exon 200539 200878 . + . insertions 6 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local similarity 200539 200878 178 + . alignment_id 21 ; Query Lalb_14628 ; Align 200539 24 81 ; Align 200621 51 129 ; Align 200753 94 96 ; Align 200852 126 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14628 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 0 -> 161 Target range: 299620 -> 300105 1 : MetThrLysGlnGluIleIleSerSerAsnSerLeuThrArgAspAsnAspTyrLysL : 20 ||| ! ! !:!... !! !||| !:!!.!!! ! !|||:!! !! !!|||:!!! MetTyrAspArgSerCysSerSerValAspGlyGlnLeuArgAsnTyrHisTyrGlnA 299621 : ATGTACGATCGATCCTGTAGCAGTGTTGACGGCCAATTGAGGAATTACCATTACCAAA : 299678 21 : ysAspValAspLeuSerIleGluTrpAsnArgTrpIleLeuLysProMetGlyValTr : 39 !.|||:!! !!! !!!!:!::!! ! !!:!|||:!:|||||||||!!:|||||||| snAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTr 299679 : ATGACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATG : 299735 40 : pPro<->ArgSerArgHisValSerGlnLeuGluValCysPheAsnTrpLeuIleAsn : 57 |! ! ! !..!!:!!.! !|||:!!|||||| ! ! !!::: :!!:!!! pArgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMet 299736 : GCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATG : 299792 58 : AlaValCysTyrSerLeuIleSerPheValPheAlaProCysTyrLeuTyrValSerL : 77 .!!:!!|||!:!||| !:!:! !|||:!! !! !|||! ! !! !|||:!!! !! ThrIleCysPheSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePheP 299793 : ACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCT : 299852 78 : euGluValGluGluValTyrGluLysLeuLysLeuSerAlaProLeuIlePheCysVa : 96 !!! !! !:!!...:!!:!!! |||:!!|||:!!! !!.!|||:!! !||||||:! heAlaGluLysSerIleHisValLysValLysValPheGlyProValGlyPheCysLe 299853 : TCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCT : 299909 97 : lMetAlaTyrIleLysTyrTyrSerLeuMetAlaHisThrAsnAspIleArgGluCys : 115 ! :!! !:!!||||||! !! !||| !:!! !..!! .!!..!..!||| uSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCys 299910 : CTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGC : 299966 116 : IleLysCysIleGluTrpAsp--TrpArgAsnValSerHisSerGluAspArgGluIl : 134 |||:!! !:!!||| ! |||## ... !|||.!. !!||| !|| IleGlnHisValGluArgAsp##---UnkUnkUnkUnkUnkSerAsnHisArgThrIl 299967 : ATCCAACACGTCGAGAGAGACNN---NNNNNNNNNNNNNNTTCGAATCATCGTACGAT : 300022 135 : eMetValAlaAsnAlaIlePheGlyArgArgLeuValLysIleCysThrPhePheMet : 153 ||||:!! ! !!!.!! !.!..!!|||!.!|||..!! :!:|||.!! ! |||:!: eMetLeuArgTyrValThrMetSerArgAsnLeuThrThrValCysAlaValPheLeu 300023 : CATGTTGAGATACGTGACTATGAGCAGAAATCTGACGACCGTGTGCGCCGTGTTTCTT : 300079 154 : PheSerGlyPheValPhePheTyr : 161 !:!:!!||| !:!!! !:!:!! TyrAlaGlyGlyMetSerTyrHis 300080 : TACGCAGGTGGTATGTCGTATCAC : 300105 vulgar: Lalb_14628 0 161 . KQ414889.1 299620 300105 + 151 M 40 120 G 0 3 M 82 246 F 0 2 G 1 0 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299621 300105 151 + . gene_id 22 ; sequence Lalb_14628 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299621 300105 . + . KQ414889.1 exonerate:protein2genome:local exon 299621 300105 . + . insertions 3 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local similarity 299621 300105 151 + . alignment_id 22 ; Query Lalb_14628 ; Align 299621 1 120 ; Align 299744 41 246 ; Align 299992 124 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14628 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 288 -> 373 Target range: 272966 -> 273302 289 : IlePheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlnTyrArgL : 308 |||:::||| ! ! !! |||::: ::: ::: ||| :::| IleTyrAsnArgArgArgAspLeuTyrLeuProLysLysAsnSer***GlnCysLysL 272967 : atatacaaTCGAAGACGTGATTTATACttaccgaagaaaaattcttaacagtgtaaaa : 273024 309 : ysValGlyGlnMetSerTyrMetIleAspTrpTyrArgLeuProGluAsnThrLysLe : 327 ||:::|||:!!:!: !||||||! :!!|||||| !||||||! !!. !! || ysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProGlyLysAspIleLe 273025 : aaattggcGAGGTAGTTTACATGACGAACTGGTACTATTTACCCGGCAAAGATATCCT : 273081 328 : uSerValValLeuIleMetAlaMetSerSerSerProThrAsnLeuThrAlaGlyArg : 346 |..!:!!:!!||||||!!::!!! !!!||| ! !! !!!.:!!|||||||||||| uAspLeuIleLeuIleIleSerArgCysSerValValIleLysIleThrAlaGlyArg 273082 : CGATCTGATTTTGATCATCTCAAGATGCAGTGTTGTGATTAAAATCACCGCTGGCAGG : 273138 347 : LeuValLysLeuSerLeuValSerPheSerAsp >>>> Target Intron 1 >> : 358 :!!||| :!!|||:!! !!!!|||.!!||| 81 bp IleValProMetSerValTyrThrPheGlyAsp++ 273139 : ATAGTTCCCATGTCTGTGTACACGTTCGGCGATgt....................... : 273176 359 : >> ValMetLysThrSerValAlaPheLeuAsnMetLeuArgThrLeuThr : 373 |||||||||!:!:!! !!|||!:!||||||||||||||| ! !||| ++ValMetLysSerAlaPheAlaTyrLeuAsnMetLeuArgGlnThrThr 273177 : ..aggtGATGAAAAGTGCGTTCGCGTACTTAAATATGCTACGACAAACGACA : 273302 vulgar: Lalb_14628 288 373 . KQ414889.1 272966 273302 + 145 M 69 207 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272967 273302 145 + . gene_id 23 ; sequence Lalb_14628 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272967 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 272967 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272967 273302 145 + . alignment_id 23 ; Query Lalb_14628 ; Align 272967 289 207 ; Align 273255 358 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14628 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 250 -> 319 Target range: 301632 -> 301839 251 : ValAspMetSerAsnThrThrAsnGlyArgIleAlaLysIleValSerGlnHisGluS : 270 ::: ......:::||| !|||!.!!:!.!! !::!:!!:!!!!! ! |||! IleLysPheGluSerThrLeuAsnAlaLysPheLeuArgValIle***Phe***GluT 301633 : attaaatttgaatctACTTTAAATGCAAAGTTTTTACGAGTAATTTGATTTTAGGAAT : 301690 271 : erArgAlaLysAspMetThrAlaValAlaThrTyrAlaIleIleLeuValSerLeuIl : 289 !!!:! !!..|||! !! !|||:!! !|||!:! !! !:!:|||..!|||!!!! rpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheTh 301691 : GGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCAC : 301747 290 : ePheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlnTyrArgLys : 308 !|||||||||||||||||||||||||||||||||:!!:!!:!!|||||| ! !! rPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGlnValLeuThr 301748 : TTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGGTACTTACT : 301804 309 : ValGlyGlnMetSerTyrMetIleAspTrpTyr : 319 !.!!::! :::......... !||| TyrSerArgSerPheHisPhePheSerMetTyr 301805 : TACAGTAGAagtttccatttcttttcaatGTAT : 301839 vulgar: Lalb_14628 250 319 . KQ414889.1 301632 301839 + 112 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301633 301839 112 + . gene_id 24 ; sequence Lalb_14628 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301633 301839 . + . KQ414889.1 exonerate:protein2genome:local exon 301633 301839 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301633 301839 112 + . alignment_id 24 ; Query Lalb_14628 ; Align 301633 251 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14624 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 529 Query range: 159 -> 381 Target range: 300183 -> 302039 160 : LysGlyAsnTyrThrMetArgLysLeuAlaHisProGlyTyrAspArgPhePheAspV : 179 !:!! !||||||||| !:! !||||||:!!|||||||||||| !!|||.!!|||. ArgGluAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspT 300184 : AGGGAGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATA : 300241 180 : alLysSerSerProThrPheGluLeuIleTyrSerAlaHisLeuLeuSerGlyPhePh : 198 .!:!!!!!|||||||||!:!|||::::::::: ||| .!!:!!!.!.!..! hrGlnThrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIl 300242 : CACAAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGAT : 300298 199 : eArgTyrAsnValThrAlaAlaSerPheSerLeuThrValIlePheValThrHisVal : 217 !! !||||||||||||.!!|||:!!!:!||||||.!!!.!|||||||||||||||:!! eMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIle 300299 : CATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATC : 300355 218 : CysGlyGlnIleGlnIleGlnLeuLeuArgLeuLysGluLeuTyrGlnGluAsnMetG : 237 |||||||||||||||||||||:!! !||||||:!!!!:||| :!!..!!.. | CysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrGlyG 300356 : TGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGGGAG : 300415 238 : luLysAsnAspGlyProAspProLeuAlaIleIleIleHisAspHisGlySerThrLe : 256 |||||:!!||||||||||||||||||!.!:!!|||:!!!..||||||! !!.!..!|| luLysAspAspGlyProAspProLeuValValIleValArgAspHisValLysValLe 300416 : AGAAGGACGACGGTCCTGATCCTTTGGTCGTTATCGTTCGAGATCACGTGAAGGTTTT : 300472 257 : u{Ly} >>>> Target Intron 1 >>>> {s}LeuAlaSerAspPheArgGlu : 264 |{!:} 1110 bp {!} ! !!!!!..!|||||| !! u{Ar}++ ++{g}AspProCysSerPheArg*** 300473 : A{AG}gt.........................ag{A}GACCCGTGTTCCTTCCGTTAG : 301606 265 : SerLeuAsnGluLeuLeuLeuThrGluIlePheGlyCysThrPheSerMetCysLeuA : 284 !! ! !.!.|||! ! ... ||| |||!!.!:! !!! ProThrPheHisLeuCysAlaValIleLysPheGluSerThrLeuAsnAlaLysPheL 301607 : CCAACTTTTCATCTCTGCgctgtaattaaatttgaatctACTTTAAATGCAAAGTTTT : 301666 285 : laGluTyrCysCysLeuMetGluTrpAsnAspMetAsnProValAlaIleThrThrTy : 303 !..! !!! !!! !||||||.!.:!!! :!! !!:!!|||!!: !|||!: euArgValIle***Phe***GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPh 301667 : TACGAGTAATTTGATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTTGACATT : 301723 304 : rLeuIleTyrCysThrSerPheSerPheAsnAlaMetIlePheCysTyrIleGlyGlu : 322 !!!!! ! ! |||||||||!!!|||||| !.!.||||||||||||||||||||| ePheThrLeuLeuThrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGlu 301724 : TTTCACTCTGTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAG : 301780 323 : LeuLeuThrGluGlu >>>> Target Intron 2 >>>> CysSerGlnValGl : 332 :!!|||:!!|||:!! 80 bp |||||||||:!!|| IleLeuSerGluGln++ ++CysSerGlnIleGl 301781 : ATTCTTTCCGAACAGgt.........................agTGTAGCCAAATTGG : 301890 333 : yPheAlaSerTyrAspValSerTrpTyrAsnLeuProProSerLysAlaSerGlyPhe : 351 |! |||||||||!!::!!..!||||||||||||||| !!!.!!:!|||! !! !.!! ySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeu 301891 : TTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTT : 301947 352 : ValLeuLeuAsnLeuThrSerLeuPheProProArgLeuValAlaGlyLysValIleL : 371 :!!||||||!:!:!!! !|||! !!:!||||||!:!|||..!|||||||||:!!||| IleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleA 301948 : ATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCG : 302007 372 : ysLeuSerLeuAsnThrPheSerValValSer : 381 ! ||||||||||||||||||||| !|||!:! spLeuSerLeuAsnThrPheSerSerValAsn 302008 : ACTTATCCTTGAATACATTCAGCTCTGTAAAT : 302039 vulgar: Lalb_14624 159 381 . KQ414889.1 300183 302039 + 529 M 97 291 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 70 210 5 0 2 I 0 76 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300184 302039 529 + . gene_id 1 ; sequence Lalb_14624 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300184 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300184 300476 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302039 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302039 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300184 302039 529 + . alignment_id 1 ; Query Lalb_14624 ; Align 300184 160 291 ; Align 301588 258 210 ; Align 301878 328 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14624 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 516 Query range: 0 -> 257 Target range: 289708 -> 290482 1 : AsnProAsnTyrGluAsnAspIleAsnHisValPheGlyLeuSerArgCysIleLeuL : 20 ||| !..!||||||!..||||||..!:!!..!|||! !|||!!!!.!!! ||||||| AsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleLeuL 289709 : AACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCTTGA : 289766 21 : ysLeuIleGlyValTrpSerLeuPheGluLysGlnSerAsnThrValGluHisValVa : 39 ||! !||||||:!!!:: !!!!! !! !..!:::!!!:!! ! !|||!....!!. ysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgThrAl 289767 : AACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGC : 289823 40 : lSerPheLeuValArgIleThrLeuLeuCysIleGlnAlaPhePheValIleProIle : 58 !||| ! |||:!!! !:!:..!! !! !! |||! !|||.!!:!!:!!|||.!! aSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValProPhe 289824 : GTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCGTTC : 289880 59 : CysLeuHisIlePhePheValGluGlnAsnProIleMetLysIleLysLeuPheGlyP : 78 !!! !|||:!!.!.||| !!!:.!.:!! !! !! ! :!!||| !.!!|||| SerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuGlyP 289881 : AGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCGGAC : 289940 79 : roProSerAsnCysValPheThrValIleLysPhePheCysMetValPheAsnGlyTh : 97 || !!!! !|||:!! !||| !!.!!|||!:!! !! !.!. !.!.!!.|||:! roLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGlySe 289941 : CGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGGTTC : 289997 98 : rThrIleGlyArgCysIleGluHisIleLysAsnAspTrpLysLysValArgAsnPro : 116 !.!!||||||||||||:!::!!||||||:!!!..|||||||||! !:!!|||:!! ! rAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAspGlu 289998 : AGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGACGAG : 290054 117 : GlnHisArgAspIleMetLeuLysGlnIleSerIleSerLysAsnLeuThrIleLeuC : 136 .!.||||||! !|||||||||!:! ! :!:!!!!!:|||::!||||||! !! !|||| AspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysLeuC 290055 : GATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAACTGT : 290114 137 : ysPheIlePheIleTyrThrAlaGlyIleSerTyrTyrThrIleIleProTyrMetAs : 155 || ||||||:!:|||! !!.!|||:!:|||||| !!|||:!!||||||! .!.:: ysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPheSe 290115 : GCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTTCTC : 290171 156 : nLysHisArgLeuLysGlyAsnTyrThrMetArgLysLeuAlaHisProGlyTyrAsp : 174 :||| ! !!!:!!!!.|||||| |||!!:||| |||.!!:!!|||||||||!!: rLysLysSerValAsnGlyAsnValThrIleArgProLeuThrTyrProGlyTyrGlu 290172 : GAAGAAGAGCGTGAACGGTAACGTGACTATCAGACCTCTAACTTATCCCGGTTACGAG : 290228 175 : ArgPhePheAspValLysSerSerProThrPheGluLeuIleTyrSerAlaHisLeuL : 194 ..!||||||||||||:!!!.!||||||.!!!:!|||:!!:!!!:!!!! !|||! !: GluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetHisCysV 290229 : GAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTG : 290288 195 : euSerGlyPhePheArgTyrAsnValThrAlaAlaSerPheSerLeuThrValIlePh : 213 !!! !! !.!..!!! ! |||:!!||| !|||:!!!:!|||||||||..!||||| alTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePh 290289 : TCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGATCTT : 290345 214 : eValThrHisValCysGlyGlnIleGlnIleGlnLeuLeuArgLeuLysGluLeuTyr : 232 |!.!||||||..!||||||||||||:!!|||||| ! !||||||:!!!!:||| eAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAspLeuThr 290346 : CGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTGACA : 290402 233 : GlnGluAsnMetGluLysAsnAspGly<->ProAspProLeuAlaIleIleIleHisA : 251 :!!..!...||| ! !.!. ! ||| !|||! !||||||:!!:!!:!: !! LysArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValValValSerG 290403 : AAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTGTGAGCG : 290462 252 : spHisGlySerThrLeuLys : 257 !|||! !..!! !|||||| lyHisValGluIleLeuLys 290463 : GTCACGTGGAGATCTTGAAG : 290482 vulgar: Lalb_14624 0 257 . KQ414889.1 289708 290482 + 516 M 241 723 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289709 290482 516 + . gene_id 2 ; sequence Lalb_14624 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289709 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289709 290482 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289709 290482 516 + . alignment_id 2 ; Query Lalb_14624 ; Align 289709 1 723 ; Align 290435 242 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14624 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 308 Query range: 4 -> 198 Target range: 294672 -> 295257 5 : GluAsnAspIleAsnHisValPheGlyLeuSerArgCysIleLeuLysLeuIleGlyV : 24 ..!||||||:!: :!! !.!! !! !!!!||| ! :!:||||||! !||||||: ArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyL 294673 : AGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTC : 294730 25 : alTrpSerLeuPheGluLysGlnSerAsnThrValGluHisValValSerPheLeuVa : 43 !!||| !!|||.!! ! !..!!.!!!!:!! !:!!.!. ! |||:!!|||.!.:!!:! euTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLe 294731 : TTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCT : 294787 44 : lArgIleThrLeuLeuCysIleGlnAlaPhePheValIleProIleCysLeuHisIle : 62 !! ! !! ! !! ! ! ! !||| !!:!!:!:||| ! ! ! ! ! ! uIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCys 294788 : GATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGT : 294844 63 : PhePheValGluGlnAsnProIleMetLysIleLysLeuPheGlyProProSerAsnC : 82 ! ||| !! :::||| :::|||!!:||||||.!.|||||| ! ! !!! ValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrS 294845 : GTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACT : 294904 83 : ysValPheThrValIleLysPhePheCysMetValPheAsnGlyThrThrIleGlyAr : 101 !:!!.!!:!!:!!:!!!:!!:! !|||:!:|||!!.!!. ! !!.!!.!! !!. erMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHi 294905 : CTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCA : 294961 102 : gCysIleGluHisIleLysAsnAspTrpLysLysValArgAsnProGlnHisArgAsp : 120 !||||||||| !!|||:!!|||||||||||| !:!! !||||||:!!||||||! sCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAla 294962 : TTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCG : 295018 121 : IleMetLeuLysGlnIleSerIleSerLysAsnLeuThrIleLeuCysPheIlePheI : 140 ||||||:!!|||.!. ! !:!!!!!:!!!..:!!|||:!! !! ! !|||.!.| IleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleI 295019 : ATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAA : 295078 141 : leTyrThrAlaGlyIleSerTyrTyrThrIleIleProTyrMet<->AsnLysHisAr : 158 |||||!:!:!!!.!:!:||||||:!!.!!|||:::|||:::... ||| .. leTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGl 295079 : TCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGA : 295135 159 : gLeuLysGlyAsnTyrThrMetArgLysLeuAlaHisProGlyTyrAspArgPhePhe : 177 ! !||| !||| !!|||!!:||| !||| !! !|||||||||!!: !||| ! uAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheVal 295136 : GAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTA : 295192 178 : AspValLysSerSerProThrPheGluLeuIleTyrSerAlaHisLeuLeuSerGlyP : 197 |||!.! ! ||||||||||||!:!|||:!!||| !!! !! !!!!:!!! !..!| AspAlaTyrSerSerProThrTyrGluIleIleArgThrHisLeuPheValTyrSerP 295193 : GACGCTTATTCCAGTCCTACCTACGAGATCATAAGAACTCATCTCTTTGTTTACTCGT : 295252 198 : hePhe : 198 ||||| hePhe 295253 : TCTTC : 295257 vulgar: Lalb_14624 4 198 . KQ414889.1 294672 295257 + 308 M 150 450 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294673 295257 308 + . gene_id 3 ; sequence Lalb_14624 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294673 295257 . + . KQ414889.1 exonerate:protein2genome:local exon 294673 295257 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294673 295257 308 + . alignment_id 3 ; Query Lalb_14624 ; Align 294673 5 450 ; Align 295126 155 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14624 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 302 Query range: 2 -> 231 Target range: 221357 -> 222047 3 : AsnTyrGluAsnAspIleAsnHisValPheGlyLeuSerArgCysIleLeuLysLeuI : 22 :!!|||:!!!..:!!:!:!!. ! ! !|||||||||!! |||||||||! !| AspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProI 221358 : GATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGA : 221415 23 : leGlyValTrpSerLeuPheGluLysGlnSerAsnThrValGluHisValValSerPh : 41 ||||||||||| !! !..! .!.! !::!|||||||||... !:!!! !!: leGlyValTrpPro---AsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTr 221416 : TCGGTGTTTGGCCA---AATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTG : 221469 42 : eLeuValArgIleThrLeuLeuCysIleGlnAlaPhePheValIleProIleCysLeu : 60 :|||:!!!.!:!!..!! !! ! !!:!: .!!|||.!!:!!:!!||| ! !!||| pLeuIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeu 221470 : GCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTT : 221526 61 : HisIlePhePheValGluGlnAsnProIleMetLysIleLysLeuPheGlyProProS : 80 :!!:!:.!!.!!! !! !:!!:!! ! !! !:!|||||||||!!.|||||| !| TyrValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuS 221527 : TACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGA : 221586 81 : erAsnCysValPheThrValIleLysPhePheCysMetValPheAsnGlyThrThrIl : 99 || !||||||.!..!! !!:!!|||!:! ! :!!:!!.!! !!! !!.! !|| erPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIl 221587 : GTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACAT : 221643 100 : eGlyArgCysIleGluHisIleLysAsnAspTrpLysLysValArgAsnProGlnHis : 118 | !!..!|||||||||!.!|||:!! |||||||||!!.:!!! ! !! !!:!! !! eArgGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAsp 221644 : CCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGAT : 221700 119 : ArgAspIleMetLeuLysGlnIleSerIleSerLysAsnLeuThrIleLeuCysPheI : 138 !:!|||||||||:!!:!!.!. ! !.!!.!!!:!...|||! !!!::!!||| . LysAspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrP 221701 : AAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACAT : 221760 139 : lePheIleTyrThrAlaGlyIleSerTyrTyrThrIleIleProTyr<->MetAsnLy : 156 !!|||!!:|||!:!... ::: |||||| ! !||||||!:! :!!..!|| hePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLy 221761 : TTTTCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAA : 221817 157 : sHisArgLeuLysGly<->AsnTyrThrMetArgLysLeuAlaHisProGlyTyrAsp : 174 | !! ! !:!!! ! ||| |||... !:!!!.! !||| !! sIleProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArg 221818 : AATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGA : 221874 175 : ArgPhePheAspValLysSerSerProThrPheGluLeuIleTyrSerAlaHisLeuL : 194 !.!! !!|||..!::!! !||||||..! !|||:!!:!:!:!||| !!!.:!!: PheIleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleM 221875 : TTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTA : 221934 195 : euSerGlyPhePheArgTyrAsnValThrAlaAlaSerPheSerLeuThrValIlePh : 213 !!:!!||| !!!.! !:!!!:!:!!|||:!!|||:!!! !||||||..!!.!!!:|| etAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPh 221935 : TGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTT : 221991 214 : eValThrHisValCysGlyGlnIleGlnIleGlnLeuLeuArgLeuLysGluLeu : 231 |!.!..!|||!.!|||||||||!!:|||:!: !:!! ! !!||||||.!.||| eAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeu 221992 : TGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTG : 222047 vulgar: Lalb_14624 2 231 . KQ414889.1 221357 222047 + 302 M 24 72 G 1 0 M 126 378 G 0 3 M 8 24 G 0 3 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221358 222047 302 + . gene_id 4 ; sequence Lalb_14624 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221358 222047 . + . KQ414889.1 exonerate:protein2genome:local exon 221358 222047 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221358 222047 302 + . alignment_id 4 ; Query Lalb_14624 ; Align 221358 3 72 ; Align 221430 28 378 ; Align 221811 154 24 ; Align 221838 162 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14624 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 296 Query range: 0 -> 257 Target range: 208185 -> 208962 1 : AsnProAsnTyrGluAsnAspIleAsnHisValPheGlyLeuSerArgCysIleLeuL : 20 ||| !||||||:!!||||||:!:!:! ! ! !! !!|||!:! !!! ! |||| AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 21 : ysLeuIleGlyValTrpSerLeuPheGluLysGlnSerAsnThrValGluHisValVa : 39 ||:!!|||||| !||| !! !! ! ! ! !::||| !:!!|||:!! ! ysIleIleGlySerTrpProArgSerIleAspArgSer---TrpLeuGluAsnSerGl 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCC---TGGTTAGAGAACAGCCA : 208297 40 : lSerPheLeuValArgIleThrLeuLeuCysIleGlnAlaPhePheValIleProIle : 58 ! !.!!|||:!!!.!:!! ! !! !|||:!:! !.!|||.!!|||||||||! ! nHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThr 208298 : GCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACC : 208354 59 : CysLeuHisIlePhePheValGluGlnAsnProIleMetLysIleLysLeuPheGlyP : 78 !!:!! ! .!!.!!|||! :!!:!! ! ! :!!:!!|||:!!! !.!! GlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerA 208355 : GGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCG : 208414 79 : roProSerAsnCysValPheThrValIleLysPhePheCysMetValPheAsnGlyTh : 97 !!! !||| !! !:!!.!..!! !!! |||!:! ! !|||..! !!..!! ! laLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGl 208415 : CTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGG : 208471 98 : rThrIleGlyArgCysIleGluHisIleLysAsnAspTrpLysLysValArgAsnPro : 116 ! !||| !!!:!|||:!!|||:!!:!!:!! !||||||!:!!!.|||..!:!! ! yAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGlu 208472 : TGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAG : 208528 117 : GlnHisArgAspIleMetLeuLysGlnIleSerIleSerLysAsnLeuThrIleLeuC : 136 :!! !!||| ! ||||||||| ! .!. |||.!!:!!!:!!!.|||! !:!::!!| GluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleC 208529 : GAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATAT : 208588 137 : ysPheIlePheIleTyrThrAlaGlyIleSerTyrTyrThrIleIleProTyrMetAs : 155 || !|||!!:||| !!.. ||| |||||| ! !:!:||| !! .. ysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrAr 208589 : GCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCG : 208645 156 : nLysHisArgLeuLys<-><->GlyAsnTyrThrMetArgLysLeuAlaHisProGly : 172 . ! ! !:!!:!! ||||||! ||| |||!:!|||!.!:!!|||! ! gAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProVal 208646 : AGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTT : 208702 173 : TyrAspArgPhePheAspValLysSerSerProThrPheGluLeuIleTyrSerAlaH : 192 ! ! !.!!.!.||||||::!! !||||||..! !|||:!!.!!|||!!!!.!! ProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValG 208703 : CCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTAC : 208762 193 : isLeuLeuSerGlyPhePheArgTyrAsnValThrAlaAlaSerPheSerLeuThrVa : 211 !.||||||||||||||| !! !:!!|||:!!|||!.!!.!:!!! !.!!|||.!!!. lnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAl 208763 : AATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGC : 208819 212 : lIlePheValThrHisValCysGlyGlnIleGlnIleGlnLeuLeuArgLeuLysGlu : 230 !:!:.!!!.!! !|||!.!|||||||||:!:|||||| !:!!! ! !!:!!:!!:!! aLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLys 208820 : GCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAG : 208876 231 : LeuTyrGlnGluAsnMetGluLysAsnAspGlyProAspPro<->LeuAlaIleIleI : 249 ||| !.!.! !... !!!::!!.!. ! ..! !|||! ! ||||||! !|||: LeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleV 208877 : TTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCG : 208936 250 : leHisAspHisGlySerThrLeuLys : 257 !:.!..!.|||! ! !!..!:!!||| alGluGlnHisValArgValIleLys 208937 : TGGAGCAGCATGTTCGAGTGATCAAG : 208962 vulgar: Lalb_14624 0 257 . KQ414889.1 208185 208962 + 296 M 32 96 G 1 0 M 127 381 G 0 6 M 84 252 G 0 3 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 208962 296 + . gene_id 5 ; sequence Lalb_14624 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208186 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208962 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208186 208962 296 + . alignment_id 5 ; Query Lalb_14624 ; Align 208186 1 96 ; Align 208282 34 381 ; Align 208669 161 252 ; Align 208924 245 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14624 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 294 Query range: 2 -> 257 Target range: 217153 -> 217924 3 : AsnTyrGluAsnAspIleAsnHisValPheGlyLeuSerArgCysIleLeuLysLeuI : 22 .!.||||||...:::|||||| !.!! !! !!:!|||!! :!:||||||! !! GluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProM 217154 : GAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGA : 217211 23 : leGlyValTrpSerLeuPheGluLysGlnSerAsnThrValGluHisValValSerPh : 41 !:|||:!!||| !! !..!::: !!!!.!! ! !..! ! :!!:!!! ! etGlyLeuTrpPro---AsnSerArgThrThrThrArgSerArgLysIleLeuTyrLy 217212 : TGGGTCTTTGGCCA---AACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAA : 217265 42 : eLeuValArgIleThrLeuLeuCysIleGlnAlaPhePheValIleProIleCysLeu : 60 |||:!!!.! ! !! !! ! !!:!: !::!|||.!. !!:!!||| !! !:!! sLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMet 217266 : ACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATG : 217322 61 : HisIlePhePheValGluGlnAsnProIleMetLysIleLysLeuPheGlyProProS : 80 :!!:!:|||.!!! !! :!!:!!! ! ! |||:!:||||||||||||||| !! TyrValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuI 217323 : TACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGA : 217382 81 : erAsnCysValPheThrValIleLysPhePheCysMetValPheAsnGlyThrThrIl : 99 ! !||||||.!..!! !!:!!|||!:!!:!! !:!!:!! !!:!! !.!! !|| lePheCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIl 217383 : TCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACAT : 217439 100 : eGlyArgCysIleGluHisIleLysAsnAspTrpLysLysValArgAsnProGlnHis : 118 | !!..!|||:!:..!...|||:!!...||||||!:!!!.|||||| ! !:!! !! eArgGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAsp 217440 : TCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGAC : 217496 119 : ArgAspIleMetLeuLysGlnIleSerIleSerLysAsnLeuThrIleLeuCysPheI : 138 |||!!: |||:!! !.!. !:!.!!.!!:::!!.|||..!:!!|||||| !. ArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrP 217497 : AGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCT : 217556 139 : lePheIleTyrThrAlaGlyIleSerTyrTyrThrIleIleProTyrMetAsnLysHi : 157 !!|||!!:|||!:!... ::: |||||| ! !|||||| !! !.. hePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyAr 217557 : TCTTCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAG : 217613 158 : sArgLeu<-><->LysGlyAsnTyrThrMetArgLysLeuAlaHisProGlyTyrAsp : 174 .! !||| !!.|||||| !|||.!.! ! !|||!.! !||| ! ! gIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLys 217614 : AATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAG : 217670 175 : ArgPhePheAspValLysSerSerProThrPheGluLeuIleTyrSerAlaHisLeuL : 194 !.!!.!!|||..!:::! !!!!|||||| !|||:!!:!:!:!! ! !!!.|||: TyrIleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuI 217671 : TATATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGA : 217730 195 : euSerGlyPhePheArgTyrAsnValThrAlaAlaSerPheSerLeuThrValIlePh : 213 !!:!!||| !!!.! !:!!...:!!|||:!!|||:!!! !||||||.!!!.! !|| leAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPh 217731 : TCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTT : 217787 214 : eValThrHisValCysGlyGlnIleGlnIleGlnLeuLeuArgLeuLysGluLeuTyr : 232 |!.!..!|||!.!||||||||||||:!!:!: !:!! ! !!|||:!!.!.||| ! eAlaValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIle 217788 : CGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATC : 217844 233 : GlnGluAsnMetGluLysAsnAspGlyProAsp<->ProLeuAlaIleIleIleHisA : 251 .!.! !.. !!!:! !!:!||| ! !||| !:!!|||! !|||:!! !. AspGlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerG 217845 : GACGGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTC : 217904 252 : spHisGlySerThrLeuLys : 257 !.|||! ! !!! !|||||| lnHisValArgIleLeuLys 217905 : AACACGTTCGGATATTAAAG : 217924 vulgar: Lalb_14624 2 257 . KQ414889.1 217153 217924 + 294 M 24 72 G 1 0 M 132 396 G 0 6 M 84 252 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217154 217924 294 + . gene_id 6 ; sequence Lalb_14624 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217154 217924 . + . KQ414889.1 exonerate:protein2genome:local exon 217154 217924 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217154 217924 294 + . alignment_id 6 ; Query Lalb_14624 ; Align 217154 3 72 ; Align 217226 28 396 ; Align 217628 160 252 ; Align 217883 244 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14624 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 279 Query range: 2 -> 257 Target range: 212851 -> 213622 3 : AsnTyrGluAsnAspIleAsnHisValPheGlyLeuSerArgCysIleLeuLysLeuI : 22 !.!||||||!!. :::||| ... !! !!:!|||!! :!!||||||! !! ThrTyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProT 212852 : ACCTACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAA : 212909 23 : leGlyValTrpSerLeuPheGluLysGlnSerAsnThrValGluHisValValSerPh : 41 |||:!!||| !! !:!!... ! !::: !!:!!||| ! !:!!:!! hrGlyLeuTrpPro---AspLysSerTyrValSerProIleGluLysAsnIleAlaAr 212910 : CGGGTTTGTGGCCC---GACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCG : 212963 42 : eLeuValArgIleThrLeuLeuCysIleGlnAlaPhePheValIleProIleCysLeu : 60 ||||||!.!! !..!! !! ! !!:!: !.!!:!.!!||||||||| ! !!||| gLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeu 212964 : ATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTG : 213020 61 : HisIlePhePheValGluGlnAsnProIleMetLysIleLysLeuPheGlyProProS : 80 :!!:!:|||.!!! !! !:::||| ... :::|||:!!||||||||| ! !: TyrValPheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheA 213021 : TACGTGTTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTG : 213080 81 : erAsnCysValPheThrValIleLysPhePheCysMetValPheAsnGlyThrThrIl : 99 !! !|||||| !.!!:!! |||!:! !! :!!:!!.!!:!!||| ! !|| laPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIl 213081 : CATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATAT : 213137 100 : eGlyArgCysIleGluHisIleLysAsnAspTrpLysLysValArgAsnProGlnHis : 118 | !!! !|||:!!||||||!!:||| !!|||||||||!!.:!!! !:!! !:!! !! eArgThrCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAsp 213138 : TCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGAC : 213194 119 : ArgAspIleMetLeuLysGlnIleSerIleSerLysAsnLeuThrIleLeuCysPheI : 138 !:!!!:|||||| ! !.!. |||.!!.!!|||!..:!!..!! !:!!||| !. LysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaP 213195 : AAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTT : 213254 139 : lePheIleTyrThrAlaGlyIleSerTyrTyrThrIleIleProTyrMetAsnLysHi : 157 !!|||!!:||||||!.! !! ! !|||!:! !:!!:!!||| !! ! ! hePheMetTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLy 213255 : TCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAA : 213311 158 : sArgLeuLysGly<-><->AsnTyrThrMetArgLysLeuAlaHisProGlyTyrAsp : 174 ! !:!! !! ! ||| |||.!.|||:!!:!!!.! !|||! !! sMetValAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSerArg 213312 : AATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGA : 213368 175 : ArgPhePheAspValLysSerSerProThrPheGluLeuIleTyrSerAlaHisLeuL : 194 !.!! !!||||||::!! !||||||..! !|||:!!.!!!:!! ! !!!.:!!: PheIleValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleI 213369 : TTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTA : 213428 195 : euSerGlyPhePheArgTyrAsnValThrAlaAlaSerPheSerLeuThrValIlePh : 213 !!:!!||| ! .!.! !:!! !:!!.!!!.!!.!:!!! !||||||.!!!.!:!:|| leAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPh 213429 : TAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTT : 213485 214 : eValThrHisValCysGlyGlnIleGlnIleGlnLeuLeuArgLeuLysGluLeuTyr : 232 |!.!..!|||!.!|||||||||!!: ||| !:!! ! !!|||:!!.!.||| eAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIle 213486 : TGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATA : 213542 233 : GlnGluAsnMetGluLysAsnAspGly<->ProAspProLeuAlaIleIleIleHisA : 251 .!.! !.. !!!:! !!:! ! ..! !||| !:!!|||:!!|||:!::!!. AspGlyArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleValAsnG 213543 : GACGGTAGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACC : 213602 252 : spHisGlySerThrLeuLys : 257 !.|||! ! !!! !|||||| lnHisValArgIleLeuLys 213603 : AGCATGTGCGGATACTGAAG : 213622 vulgar: Lalb_14624 2 257 . KQ414889.1 212851 213622 + 279 M 24 72 G 1 0 M 134 402 G 0 6 M 80 240 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212852 213622 279 + . gene_id 7 ; sequence Lalb_14624 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212852 213622 . + . KQ414889.1 exonerate:protein2genome:local exon 212852 213622 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212852 213622 279 + . alignment_id 7 ; Query Lalb_14624 ; Align 212852 3 72 ; Align 212924 28 402 ; Align 213332 162 240 ; Align 213575 242 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14624 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 277 Query range: 13 -> 239 Target range: 266649 -> 267330 14 : LeuSerArgCysIleLeuLysLeuIleGlyValTrpSerLeuPheGluLysGlnSerA : 33 |||!:!|||!! .!!||||||! !||||||!.!||| !!! !!!...! !|||! LeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuThrSerL 266650 : TTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCACATCTA : 266707 34 : snThrValGluHisValValSerPheLeuValArgIleThrLeuLeuCysIleGlnAl : 52 !. :!!|||!..:!!||||||!:! !:!!! !:!!! !! !! !||| ! ! ys---LeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIleLe 266708 : AA---CTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATACT : 266761 53 : aPhePheValIleProIleCysLeuHisIlePhePheValGluGlnAsnProIleMet : 71 !||| !||||||||| !! !!!|||:!! !!.!.! !!!::!!!:! ! !! ! uPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgThr 266762 : GTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTACG : 266818 72 : LysIleLysLeuPheGlyProProSerAsnCysValPheThrValIleLysPhePheC : 91 |||:!:|||:!!|||||||||! !|||:!!!! !! !! !! !|||!!.!:! ! LysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrThrT 266819 : AAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACACCA : 266878 92 : ysMetValPheAsnGlyThrThrIleGlyArgCysIleGluHisIleLysAsnAspTr : 110 :!!:!!.!...!.!!! ! !||| !! !!|||:!!||||||!!::!!!..||||| hrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTr 266879 : CACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGATTG : 266935 111 : pLysLysValArgAsnProGlnHisArgAspIleMetLeuLysGlnIleSerIleSer : 129 |!:!! |||! !!..|||:!! !!!:!.!.:!:|||||||||.!. !!!|||.!! pArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleGly 266936 : GAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCGGT : 266992 130 : LysAsnLeuThrIleLeuCysPheIlePheIleTyrThrAlaGlyIleSerTyrTyrT : 149 ::: !!:!!.!!|||!!!||| |||!!: ! !!.!! !:!!.!!|||! !. ArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCysV 266993 : CGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTG : 267052 150 : hrIleIleProTyrMetAsnLysHisArgLeuLysGlyAsnTyrThr<-><->MetAr : 166 .!|||! !!!:!! ! :!! ! ! ! |||||| ! ||| :!:!. alIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleValHi 267053 : TGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTACA : 267109 167 : gLysLeuAlaHisProGlyTyrAspArgPhePheAspValLysSerSerProThrPhe : 185 ! !||| !! ! !!! !||| ! !:!.!..!!! ||| ! !!!||||||||| ! sLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrAsn 267110 : TCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGAAC : 267166 186 : GluLeuIleTyrSerAlaHisLeuLeuSerGlyPhePheArgTyrAsnValThrAlaA : 205 |||:!!:!! ! !:!!!!.!!!:!!|||||||||.!! ! !!::: !..!!.!! GluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValValG 267167 : GAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCG : 267226 206 : laSerPheSerLeuThrValIlePheValThrHisValCysGlyGlnIleGlnIleGl : 224 .!:!!|||||||||.!!!.!:!:|||!.!.!!|||!.!|||||||||:!:...:!:! lyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerValLe 267227 : GTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCT : 267283 225 : nLeuLeuArgLeuLysGluLeuTyrGlnGluAsnMetGluLysAsn : 239 !:!!:!! !!:!!||||||!!! .!...!::!! !!:!..||| uMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsn 267284 : GATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAAT : 267330 vulgar: Lalb_14624 13 239 . KQ414889.1 266649 267330 + 277 M 20 60 G 1 0 M 130 390 G 0 6 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266650 267330 277 + . gene_id 8 ; sequence Lalb_14624 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266650 267330 . + . KQ414889.1 exonerate:protein2genome:local exon 266650 267330 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 266650 267330 277 + . alignment_id 8 ; Query Lalb_14624 ; Align 266650 14 60 ; Align 266710 35 390 ; Align 267106 165 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14624 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 273 Query range: 0 -> 231 Target range: 284496 -> 285201 1 : AsnProAsnTyrGluAsnAspIleAsnHisValPheGlyLeuSerArgCysIleLeuL : 20 :!! !!!..!::!!:!..||| ! :!! ! ! !:!!!:!|||!! .!!|||| AspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuL 284497 : GATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCA : 284554 21 : ysLeuIleGlyValTrpSerLeuPheGluLysGlnSerAsnThrValGluHisValVa : 39 ||! !|||||||||||| !!||| ... !!.!|||:!!||| ! :!! ysProIleGlyValTrpProLeu---SerLeuCysValThrThrLeuGluLysIleSe 284555 : AACCGATTGGCGTATGGCCTCTC---AGTCTCTGCGTGACCACCTTGGAAAAGATCAG : 284608 40 : lSerPheLeuValArgIleThrLeuLeuCysIleGlnAlaPhePheValIleProIle : 58 !||| ! :!!:!! !:!!! ! !! !! !:!: !!.!|||.!!:!!:!!||| ! rSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCys 284609 : TTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGC : 284665 59 : CysLeuHisIlePhePheValGluGlnAsnProIle<->MetLysIleLysLeuPheG : 77 ..!||| !! ! ! .!!! !:!! ..! !:!! ! !|||||||||:!!.!!| AlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleG 284666 : GCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCG : 284725 78 : lyProProSerAsnCysValPheThrValIleLysPhePheCysMetValPheAsnGl : 96 |||||! !||| !|||:!!.!..!!!.!||||||!:!!:! !:!::!!! ..!|| lyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGl 284726 : GTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGG : 284782 97 : yThrThrIleGlyArgCysIleGluHisIleLysAsnAspTrpLysLysVal<-><-> : 114 | !! !||||||!:!|||:!::!! !!|||::: ||||||... ..! yGlyLysIleGlyGlnCysValLysAspIleArgAlaAspTrpSerLeuThrLeuSer 284783 : CGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCG : 284839 115 : <->ArgAsnProGlnHisArgAspIleMetLeuLysGlnIleSerIleSerLysAsnL : 132 !! ... :::...|||:::|||||| ! ! ... !!!!|||.!!::!::!| HisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerL 284840 : CATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTT : 284899 133 : euThrIleLeuCysPheIlePheIleTyrThrAlaGlyIleSerTyrTyrThrIleIl : 151 ||.!!|||!!!||| ! !|||!!:|||:!!!.!|||.!!! !||| !|||:!:!! euAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMe 284900 : TGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGAT : 284956 152 : eProTyrMetAsn<->LysHisArgLeuLysGlyAsnTyrThrMetArgLysLeuAla : 169 :|||! !.. ::: ..!:!!! ! !||| ! |||:!!|||...! !||| tProLeuCysThrValArgThrGluIleIleAspAsnGluThrValArgSerGlnAla 284957 : GCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCG : 285013 170 : HisProGlyTyrAspArgPhePheAspValLysSerSerProThrPheGluLeuIleT : 189 !||| !||| ! !!.!!.!!||| !:::!!!||||||:!!||||||:!!:!: PheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValG 285014 : TTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGC : 285073 190 : yrSerAlaHisLeuLeuSerGlyPhePheArgTyrAsnValThrAlaAlaSerPheSe : 208 ! ! ! !!!.! !|||:!!!.!||| !!! !|||:::||||||!.!!.!:!!! !|| lnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSe 285074 : AATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAG : 285130 209 : rLeuThrValIlePheValThrHisValCysGlyGlnIleGlnIleGlnLeuLeuArg : 227 ||||.!!!.!:!:||||||! !|||||||||||||||.!!::!|||! :!! !!:! rLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLys 285131 : CTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAG : 285187 228 : LeuLysGluLeu : 231 ||| ! :!!||| LeuAspLysLeu 285188 : CTGGATAAGCTC : 285201 vulgar: Lalb_14624 0 231 . KQ414889.1 284496 285201 + 273 M 27 81 G 1 0 M 42 126 G 0 3 M 43 129 G 0 9 M 42 126 G 0 3 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284497 285201 273 + . gene_id 9 ; sequence Lalb_14624 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284497 285201 . + . KQ414889.1 exonerate:protein2genome:local exon 284497 285201 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284497 285201 273 + . alignment_id 9 ; Query Lalb_14624 ; Align 284497 1 81 ; Align 284578 29 126 ; Align 284707 71 129 ; Align 284845 114 126 ; Align 284974 156 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14624 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 266 Query range: 0 -> 231 Target range: 278549 -> 279254 1 : AsnProAsnTyrGluAsnAspIleAsnHisValPheGlyLeuSerArgCysIleLeuL : 20 :!! !!!..!::.!.!..||| ! :!! ! ! !:!!!:!|||!! .!!|||| AspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuL 278550 : GATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCA : 278607 21 : ysLeuIleGlyValTrpSerLeuPheGluLysGlnSerAsnThrValGluHisValVa : 39 ||! !|||||||||||| !!||| ... !!.!|||:!!||| ! :!! ysProIleGlyValTrpProLeu---SerLeuCysValThrThrLeuGluLysIleSe 278608 : AACCGATTGGCGTATGGCCTCTC---AGTCTCTGCGTGACCACCTTGGAAAAGATCAG : 278661 40 : lSerPheLeuValArgIleThrLeuLeuCysIleGlnAlaPhePheValIleProIle : 58 !||| ! :!!:!! !:!!! ! !! !! !:!: !!.!|||.!!:!!:!!||| ! rSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCys 278662 : TTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGC : 278718 59 : CysLeuHisIlePhePheValGluGlnAsnProIle<->MetLysIleLysLeuPheG : 77 ..!||| !! ! ! .!!! !:!! ..! !:!! ! !|||||||||:!!.!!| AlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleG 278719 : GCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCG : 278778 78 : lyProProSerAsnCysValPheThrValIleLysPhePheCysMetValPheAsnGl : 96 |||||! !||| !|||..!.!..!!..!||||||!:!!:! !:!::!!! ..!|| lyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGl 278779 : GTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGG : 278835 97 : yThrThrIleGlyArgCysIleGluHisIleLysAsnAspTrpLys<-><-><->Lys : 112 | !! !||||||!:!|||:!:.!. !!|||:::!..||||||... ..! yGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSer 278836 : CGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCG : 278892 113 : ValArgAsnProGlnHisArgAspIleMetLeuLysGlnIleSerIleSerLysAsnL : 132 !|||... :::...|||:::|||||| ! ! ... !!!!|||.!!::!::!| TyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerL 278893 : TATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTT : 278952 133 : euThrIleLeuCysPheIlePheIleTyrThrAlaGlyIleSerTyrTyrThrIleIl : 151 ||.!!|||!!! !! ! !|||!!:|||:!!!.!|||:!!! !||| !.!!:!:!! euAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMe 278953 : TGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGAT : 279009 152 : ePro<->TyrMetAsnLysHisArgLeuLysGlyAsnTyrThrMetArgLysLeuAla : 169 :||| !:! ::: ..!:!!! ! !||| ! |||:!!|||...! !||| tProLeuPheAlaValArgThrGluIleIleAspAsnGluThrValArgSerGlnAla 279010 : GCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCG : 279066 170 : HisProGlyTyrAspArgPhePheAspValLysSerSerProThrPheGluLeuIleT : 189 !||| !||| ! !!.!!.!!||| !:::!!!||||||:!!||||||:!!:!: PheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValG 279067 : TTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGC : 279126 190 : yrSerAlaHisLeuLeuSerGlyPhePheArgTyrAsnValThrAlaAlaSerPheSe : 208 ! ! ! !!!.! !|||:!!!.!||| !! !|||:::||||||!.!!.!:!!! !|| lnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSe 279127 : AATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAG : 279183 209 : rLeuThrValIlePheValThrHisValCysGlyGlnIleGlnIleGlnLeuLeuArg : 227 ||||! !!.!:!:||||||! !|||||||||||||||.!!::!|||! :!! !!:! rLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLys 279184 : CTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAG : 279240 228 : LeuLysGluLeu : 231 ||| ! :!!||| LeuAspLysLeu 279241 : CTGGATAAGCTC : 279254 vulgar: Lalb_14624 0 231 . KQ414889.1 278549 279254 + 266 M 27 81 G 1 0 M 42 126 G 0 3 M 41 123 G 0 9 M 41 123 G 0 3 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278550 279254 266 + . gene_id 10 ; sequence Lalb_14624 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278550 279254 . + . KQ414889.1 exonerate:protein2genome:local exon 278550 279254 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278550 279254 266 + . alignment_id 10 ; Query Lalb_14624 ; Align 278550 1 81 ; Align 278631 29 126 ; Align 278760 71 123 ; Align 278892 112 123 ; Align 279018 153 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14624 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 247 Query range: 2 -> 260 Target range: 232438 -> 233218 3 : AsnTyrGluAsnAspIleAsnHisValPheGlyLeuSerArgCysIleLeuLysLeuI : 22 ||| ! !...||| !.!.:!! !.!! !:!!!:!|||!! .!!|||! !! !! AsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProM 232439 : AACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGA : 232496 23 : leGlyValTrpSerLeuPheGluLysGlnSerAsnThrValGluHisValValSerPh : 41 !:|||!.!||| !!! ! !! !:!! |||!.. !.!:!!!!.:!!:!!:!! etGlyAlaTrpProArgValThrGluThrSerArg---AlaGlnGlnLeuLeuAlaLy 232497 : TGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGA---GCCCAGCAACTACTCGCGAA : 232550 42 : eLeuValArgIleThrLeuLeuCysIleGlnAlaPhePheValIleProIleCysLeu : 60 |||:!!|||:!!|||! !! !! !:!:..! !! !! :!!:!!||| ! !||| sLeuLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValProCysIleLeu 232551 : ACTGTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTG : 232607 61 : HisIlePhePheValGluGlnAsnProIleMetLysIleLysLeuPheGlyProProS : 80 !|||.!.|||! !!!: !!:!! ! !:!!!:|||! !.!!|||||| !| PheIleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetS 232608 : TTCATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGA : 232667 81 : erAsnCysValPheThrValIleLysPhePheCysMetValPheAsnGlyThrThrIl : 99 ||:!!! !:!!.!. !! !:!:!!.!:!! !|||:!!:!! !!.!.!!.! !|| erHisPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIl 232668 : GTCACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACAT : 232724 100 : eGlyArgCysIleGluHisIleLysAsnAspTrpLysLysValArgAsnProGlnHis : 118 | ! !|||:!:|||!!.:!:|||.!.||||||::!!!.|||!:!!!.||| ||| eLeuTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLysProValHis 232725 : CCTCTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCAT : 232781 119 : ArgAspIleMetLeuLysGlnIleSerIleSerLysAsnLeuThrIleLeuCysPheI : 138 ||||||:!:|||||||||.!. !.!:!!.!!:::::::!!.!! !:!!..! . ArgAspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaP 232782 : CGTGATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGT : 232841 139 : lePheIleTyrThrAlaGlyIleSerTyrTyrThrIleIleProTyrMetAsnLysHi : 157 !!! !!!::!!|||!.!! ! !||| !! ! ! !:!!! ! ! ! ! !.. heCysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerTh 232842 : TTTGCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCAC : 232898 158 : sArgLeuLysGlyAsn<-><->TyrThrMetArgLysLeuAlaHisProGlyTyrAsp : 174 !! ! !|||||| |||:!!||| ! !||| !! ! !! !||| rPheTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThr 232899 : GTTCTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACG : 232955 175 : ArgPhePheAspValLysSerSerProThrPheGluLeuIleTyrSerAlaHisLeuL : 194 !:!.!..!.|||..!!:!! !||||||||| !|||:!!!!:!:! ! !!!.! !| LysLeuMetAspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysL 232956 : AAGCTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTC : 233015 195 : euSerGlyPhePheArgTyrAsnValThrAlaAlaSerPheSerLeuThrValIlePh : 213 |||||||||||.!! ! !!::!||||||!.!!.!:!!! !.!!||| !!.!:!!.! euSerGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLe 233016 : TCTCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCT : 233072 214 : eValThrHisValCysGlyGlnIleGlnIleGlnLeuLeuArgLeuLysGluLeuTyr : 232 .!.!! !|||!.!|||||||||:!:.!.:!: !:!!! !!:!||| ! !!:||| uAlaMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuVal 233073 : AGCGATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTG : 233129 233 : Gln<->GluAsnMetGluLysAsnAspGlyProAspProLeuAlaIleIleIleHisA : 251 .!. :!!.....!|||:!!!..! !!.!! ! !|||!.!.!!|||:!:.!. AspAlaLysGlyGlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluH 233130 : GACGCGAAAGGGCAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGC : 233189 252 : spHisGlySerThrLeuLysLeuAlaSer : 260 !!||| ! !!||||||!:!! ! !||| isHisLeuArgThrLeuArgTyrLeuSer 233190 : ATCATTTGCGTACATTAAGGTATTTGTCT : 233218 vulgar: Lalb_14624 2 260 . KQ414889.1 232438 233218 + 247 M 31 93 G 1 0 M 128 384 G 0 6 M 71 213 G 0 3 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232439 233218 247 + . gene_id 11 ; sequence Lalb_14624 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232439 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232439 233218 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 232439 233218 247 + . alignment_id 11 ; Query Lalb_14624 ; Align 232439 3 93 ; Align 232532 35 384 ; Align 232922 163 213 ; Align 233138 234 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14624 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 247 Query range: 105 -> 231 Target range: 304413 -> 304794 106 : IleLysAsnAspTrpLysLysValArgAsnProGlnHisArgAspIleMetLeuLysG : 125 :!!...!.!! !:::!!:!!|||..!::!! !::! !!|||!!:!!:||||||||| LeuSerThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysT 304414 : CTCTCTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAAT : 304471 126 : lnIleSerIleSerLysAsnLeuThrIleLeuCysPheIlePheIleTyrThrAlaGl : 144 ! ..!!!:.!!::!||||||||||||:!!||| !||||||!!:||||||!.!|| yrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGl 304472 : ACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGG : 304528 145 : yIleSerTyrTyrThrIleIleProTyrMetAsnLysHisArgLeu<->LysGlyAsn : 162 |! !! !|||:!!|||:!!!!:! !!:! !!.! ! !:!! :!! !||| yThrIleTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsn 304529 : CACCATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAAT : 304585 163 : TyrThrMetArgLysLeuAlaHisProGlyTyrAspArgPhePheAspValLysSerS : 182 !|||!!:!:! !|||!.!:!!||| !|||..! !!!.|||||||||:!!!!!| ArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrS 304586 : CGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAA : 304645 183 : erProThrPheGluLeuIleTyrSerAlaHisLeuLeuSerGlyPhePheArgTyrAs : 201 |||||! !!:!||||||:!!|||! !!.!|||! !:!!!!!|||!:! ! ! !|||:: erProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSe 304646 : GCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTC : 304702 202 : nValThrAlaAlaSerPheSerLeuThrValIlePheValThrHisValCysGlyGln : 220 !:!!||||||!.!:!!! !.!!|||.!!!.!:!!|||!.!||||||!.!||||||||| rIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGln 304703 : TATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAA : 304759 221 : IleGlnIleGlnLeuLeuArgLeuLysGluLeu : 231 |||.!.||| :!!! !|||||| !!:||| IleAspIleValMetSerArgLeuGlyAspLeu 304760 : ATTGATATCGTTATGTCTCGATTGGGTGATCTT : 304794 vulgar: Lalb_14624 105 231 . KQ414889.1 304413 304794 + 247 M 54 162 G 0 3 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304414 304794 247 + . gene_id 12 ; sequence Lalb_14624 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304414 304794 . + . KQ414889.1 exonerate:protein2genome:local exon 304414 304794 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304414 304794 247 + . alignment_id 12 ; Query Lalb_14624 ; Align 304414 106 162 ; Align 304579 160 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14624 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 223 Query range: 290 -> 382 Target range: 291368 -> 292557 291 : GluTrpAsnAspMetAsnProValAlaIleThrThrTyrLeuIleTyrCysThrSerP : 310 ||||||.!...!! :!! !!:!!!.!||| !||||||:!!! ! ! !||||||| GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 311 : heSerPheAsnAlaMetIlePheCysTyrIleGlyGluLeuLeuThrGluGlu >>> : 328 ||!!!|||||| !:!!||||||||||||:!!|||||||||||| !! !:!! heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln++ 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAGgt... : 291482 329 : > Target Intron 1 >>>> CysSerGlnValGlyPheAlaSerTyrAspValS : 339 913 bp !!|||:!!:!!!.! !||||||||||||..!. ++GlySerGluIleAlaHisAlaSerTyrAspThrG 291483 : ......................agGGTAGTGAAATCGCGCACGCTTCCTACGATACAG : 292426 340 : erTrpTyrAsnLeuProProSerLysAlaSerGlyPheValLeuLeuAsnLeuThrSe : 358 .!||||||||||||||| ! !!|||||| !!! !.!!||||||:!! ! !! !!! luTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIleTh 292427 : AATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAAC : 292483 359 : rLeuPheProProArgLeuValAlaGlyLysValIleLysLeuSerLeuAsnThrPhe : 377 ! ! !||| !!:!|||..!|||||||||:!!.!! |||||||||||||||||| rLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPhe 292484 : GAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTT : 292540 378 : SerValValSerAsp : 382 .!!!.!||| !!!!: GlyAlaValArgGlu 292541 : GGCGCTGTACGTGAA : 292557 vulgar: Lalb_14624 290 382 . KQ414889.1 291368 292557 + 223 M 37 111 5 0 2 I 0 909 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 292557 223 + . gene_id 13 ; sequence Lalb_14624 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292557 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292557 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 292557 223 + . alignment_id 13 ; Query Lalb_14624 ; Align 291369 291 111 ; Align 292393 328 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14624 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 213 Query range: 0 -> 109 Target range: 299662 -> 299989 1 : AsnProAsnTyrGluAsnAspIleAsnHisValPheGlyLeuSerArgCysIleLeuL : 20 ||| !:!!|||:!!|||||||||:!!:!!..!.!. !:!!!!!!:!!! :!:|||| AsnTyrHisTyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuL 299663 : AATTACCATTACCAAAATGACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGA : 299720 21 : ysLeuIleGlyValTrpSerLeuPheGluLysGlnSerAsnThrValGluHisValVa : 39 ||! !|||||||||||| !!|||.!.!!::!!!::|||!:!! !:!!||||||:!!|| ysProIleGlyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuVa 299721 : AACCTATCGGAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGT : 299777 40 : lSerPheLeuValArgIleThrLeuLeuCysIleGlnAlaPhePheValIleProIle : 58 ||||.!!:!!:!!! !! !! !! !!!!! !! !! ! !|||.!!|||:!:||| ! lSerIleValLeuMetThrIleCysPheSerSerLeuPhePheIleValLeuProSer 299778 : CTCGATCGTTCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCC : 299834 59 : CysLeuHisIlePhePheValGluGlnAsnProIleMetLysIleLysLeuPheGlyP : 78 !!! !:!!|||||||||!.!|||:!!!:! ! !:!:|||:!:|||:!!||||||| GlyHisTyrIlePhePheAlaGluLysSerIleHisValLysValLysValPheGlyP 299835 : GGTCATTACATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTC : 299894 79 : roProSerAsnCysValPheThrValIleLysPhePheCysMetValPheAsnGlyTh : 97 || !.!! !|||:!!! !:!!:!!:!!|||!:!! !! !:!: !.!.|||||| roValGlyPheCysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGl 299895 : CGGTTGGTTTTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGG : 299951 98 : rThrIleGlyArgCysIleGluHisIleLysAsnAsp : 109 !.!!.!!! !|||||||||:!!|||:!!:!!!..||| yAlaPheGluArgCysIleGlnHisValGluArgAsp 299952 : CGCGTTCGAACGATGCATCCAACACGTCGAGAGAGAC : 299989 vulgar: Lalb_14624 0 109 . KQ414889.1 299662 299989 + 213 M 109 327 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299663 299989 213 + . gene_id 14 ; sequence Lalb_14624 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299663 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299663 299989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299663 299989 213 + . alignment_id 14 ; Query Lalb_14624 ; Align 299663 1 327 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14624 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 326 -> 380 Target range: 297641 -> 297803 327 : GluCysSerGlnValGlyPheAlaSerTyrAspValSerTrpTyrAsnLeuProProS : 346 :!!..!..!:!! !!||| !|||:!!|||:!!:!!..!||||||||||||||||||! GlnAlaGluLysPheGlyAsnAlaAlaTyrAsnIleGluTrpTyrAsnLeuProProA 297642 : CAGGCTGAAAAATTCGGCAATGCAGCTTATAACATCGAATGGTACAACTTACCGCCAA : 297699 347 : erLysAlaSerGlyPheValLeuLeuAsnLeuThrSerLeuPheProProArgLeuVa : 365 :!!:!||| !! !.!.||||||:!!! ! !! !:!! !|||||||||||||||.. snArgAlaLeuAspLeuValLeuMetIleGlyIleAlaLysPheProProArgLeuTh 297700 : ACAGGGCTCTCGATCTGGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCAC : 297756 366 : lAlaGlyLysValIleLysLeuSerLeuAsnThrPheSerValVal : 380 !...||||||:::... :::|||:!!||||||||||||!.!||| rGlyGlyLysIlePheAspIleSerIleAsnThrPheSerAlaVal 297757 : AggtggaaaaatattcgatatatCGATAAACACGTTCAGTGCCGTA : 297803 vulgar: Lalb_14624 326 380 . KQ414889.1 297641 297803 + 143 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297642 297803 143 + . gene_id 15 ; sequence Lalb_14624 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297642 297803 . + . KQ414889.1 exonerate:protein2genome:local exon 297642 297803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297642 297803 143 + . alignment_id 15 ; Query Lalb_14624 ; Align 297642 327 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14624 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 288 -> 327 Target range: 210657 -> 210774 289 : LeuMetGluTrpAsnAspMetAsnProValAlaIleThrThrTyrLeuIleTyrCysT : 308 ||| !||||||:!!..!! :!!|||:!!::!! ! !||||||:!!:!! ! !| Leu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValLeuLeuT 210658 : CTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTACTCCTCA : 210715 309 : hrSerPheSerPheAsnAlaMetIlePheCysTyrIleGlyGluLeuLeuThrGluGl : 327 ||||| !!!!!|||||| !.!.|||||||||||||||||||||:!!|||.!!|||:! hrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAlaGluGl 210716 : CTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGCTGAACA : 210772 328 : u : 327 : n 210773 : g : 210774 vulgar: Lalb_14624 288 327 . KQ414889.1 210657 210774 + 113 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210658 210774 113 + . gene_id 16 ; sequence Lalb_14624 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 210658 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210658 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210658 210774 113 + . alignment_id 16 ; Query Lalb_14624 ; Align 210658 289 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14624 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 282 -> 327 Target range: 214605 -> 214740 283 : LeuAlaGluTyrCysCysLeuMetGluTrpAsnAspMetAsnProValAlaIleThrT : 302 :::...:::::: ||| |||||||||...! ||| !..!.!!! !..!| IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 303 : hrTyrLeuIleTyrCysThrSerPheSerPheAsnAlaMetIlePheCysTyrIleGl : 321 |||||:!!:!:! ! !! !|||...:::|||||| ...||||||||||||||||| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 322 : yGluLeuLeuThrGluGlu : 327 |||||||:!!:!!|||:!! yGluLeuValSerGluGln 214721 : CGAGCTTGTGTCTGAACAG : 214740 vulgar: Lalb_14624 282 327 . KQ414889.1 214605 214740 + 108 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 214740 108 + . gene_id 17 ; sequence Lalb_14624 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 214740 108 + . alignment_id 17 ; Query Lalb_14624 ; Align 214606 283 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14624 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 289 -> 329 Target range: 305097 -> 305217 290 : MetGluTrpAsnAspMetAsnProValAlaIleThrThrTyrLeuIleTyrCysThrS : 309 ..!!!:|||.!...!! ||| !!|||::!:!!||||||||| !:!:! ! !| GlnAspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValLeuLeuIleS 305098 : caGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGTTACTGATAT : 305155 310 : erPheSerPheAsnAlaMetIlePheCysTyrIleGlyGluLeuLeuThrGluGluCy : 328 || ! !!!|||||| !.!.|||!!.|||||||||||||||:!!|||! !|||:!! erValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMetGluLysVa 305156 : CTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTATGGAAAAGGT : 305212 329 : sSer : 329 ||| lSer 305213 : Gagt : 305217 vulgar: Lalb_14624 289 329 . KQ414889.1 305097 305217 + 104 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305098 305217 104 + . gene_id 18 ; sequence Lalb_14624 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305098 305217 . + . KQ414889.1 exonerate:protein2genome:local exon 305098 305217 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305098 305217 104 + . alignment_id 18 ; Query Lalb_14624 ; Align 305098 290 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14624 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 290 -> 330 Target range: 272836 -> 272956 291 : GluTrpAsnAspMetAsnProValAlaIleThrThrTyrLeuIleTyrCysThrSerP : 310 ||||||!.!||| :!! ! !::!:!!|||||||||!!!!!: !! !|||. GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 311 : heSerPheAsnAlaMetIlePheCysTyrIleGlyGluLeuLeuThrGluGluCysSe : 329 !.:::|||||| ...||| |||||||||||||||:!!|||||||||..! ! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArgValMe 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGGTAAT : 272951 330 : rGln : 330 ||| tGln 272952 : gcaa : 272956 vulgar: Lalb_14624 290 330 . KQ414889.1 272836 272956 + 102 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 272956 102 + . gene_id 19 ; sequence Lalb_14624 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272837 272956 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272956 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 272956 102 + . alignment_id 19 ; Query Lalb_14624 ; Align 272837 291 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 562 Query range: 0 -> 250 Target range: 289726 -> 290482 1 : AspValAsnTyrThrLeuGluMetCysArgTrpLeuLeuLysIleLeuGlyValTrpT : 20 |||:!!..!||||||!!!|||:!:|||!.!|||:!!|||||| :!!|||:!!!:: AspIleArgTyrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrP 289727 : GACATACGTTACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATC : 289784 21 : hrLeuValTyrHisArgIleSerLysSerAspArgAlaLeuCysThrAlaThrLeuAl : 39 !!!!!|||!:! !||| |||!:! !!!!:|||.!! !! ..! ! !:!! roPheValPheSerArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLe 289785 : CTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCT : 289841 40 : aThrCysIleGlyIleLeuSerPheThrIleLeuProSerLeuTyrSerValIlePhe : 58 !..!||| !..!||||||..!|||! !|||:!!|||! ! !:!! !|||:!!||| uValCysCysSerIleLeuGlnPheIleIleValProPheSerHisHisValLeuPhe 289842 : GGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTC : 289898 59 : ThrLysAsnSerThrAspThrIleIleLysLeuLeuGlyProValGlyLeuCysSerP : 78 !:! ! |||..!! !:!!|||.!!:!!||| !|||||||||:!! !!!!|||! ! SerAspAsnAspMetAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuT 289899 : AGCGACAACGACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGA : 289958 79 : heCysThrValLysTyrMetTyrLeuIleLeuLysGlyLysSerLeuGlyArgCysVa : 97 ! ! !!|||||| |||!!!! !:!!||||||..!:!!:!!||||||||||| hrThrPhePheLysTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysVa 289959 : CCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGT : 290015 98 : lGlnHisLeuGluArgAspTrpGluMetValThrHisProGlyHisArgSerIleMet : 116 |:!!|||:!!||||||||||||:!!|||:!! ! !! !! !|||||| !|||||| lLysHisIleGluArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMet 290016 : GAAACACATCGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATG : 290072 117 : LeuLysTyrSerSerIleSerArgLysLeuIleValLeuCysValValPheLeuTyrS : 136 |||!:!||| !!!!!!:||||||!!.|||||| !||||||!.!:!!|||||||||! LeuArgTyrValThrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrI 290073 : CTCAGATACGTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACA : 290132 137 : erGlyGlyLeuSerTyrHisThrValLysGlnLeuIleThrLysAspGluSerThrLe : 155 !|||||||||||||||:!!||||||! !! !|||.!!:!!||| ! ... !!.! leGlyGlyLeuSerTyrAsnThrValIleProLeuPheSerLysLysSerValAsnGl 290133 : TAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGG : 290189 156 : uAsnSerThrGluArgProPheValTyrProCysPhe<->GluPheIleAsnProGln : 173 !||| !||| ||||||.!...!|||||| !!!:! ||||||.!!:!! !||| yAsnValThrIleArgProLeuThrTyrProGlyTyrGluGluPhePheAspValGln 290190 : TAACGTGACTATCAGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAG : 290246 174 : AlaSerProAsnTyrGluIleIlePhePheValHisCysLeuSerGlyLeuIleGlnT : 193 !|||||| |||||||||:!!|||! !:!!||||||:!!! !! !:!!||| ! LysSerProAlaTyrGluIleValPheCysMetHisCysValTyrValMetIleThrA 290247 : AAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGG : 290306 194 : yrThrIleThrSerAlaMetTyrSerLeuAlaAlaIlePheValThrHisIleCysGl : 212 !.!||||||! !||| !|||||||||.!!.!!||||||!.!||||||! !||||| laAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGl 290307 : CGAACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGG : 290363 213 : yArgIleGluIleGlnIleSerArgLeuAspGluLeuIleGlu<->GlySerGluGlu : 230 |!:!|||:!!||||||! !!!||||||!!:!!:|||! !:!! |||! ! ! ! yGlnIleLysIleGlnThrThrArgLeuGluAspLeuThrLysArgGlyMetLeuLeu 290364 : TCAGATTAAGATACAAACGACGCGGCTGGAGGATCTGACAAAGAGAGGGATGCTGTTG : 290420 231 : LysProIlePheTyrAspArgLeuGlyIleIleIleGlnGluHisAlaGluValLeuA : 250 :!! ! ! ! !|||||||||!.!:!!:!!:!:...! |||!.!|||:!!|||! GluLysGlyValSerAspArgLeuAlaValValValSerGlyHisValGluIleLeuL 290421 : GAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTGTGAGCGGTCACGTGGAGATCTTGA : 290480 251 : rg : 250 :! ys 290481 : AG : 290482 vulgar: Lalb_14625 0 250 . KQ414889.1 289726 290482 + 562 M 167 501 G 0 3 M 59 177 G 0 3 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289727 290482 562 + . gene_id 1 ; sequence Lalb_14625 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289727 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289727 290482 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289727 290482 562 + . alignment_id 1 ; Query Lalb_14625 ; Align 289727 1 501 ; Align 290231 168 177 ; Align 290411 227 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 421 Query range: 155 -> 374 Target range: 300189 -> 302039 156 : AsnSerThrGluArgProPheValTyrProCysPheGlu<->PheIleAsnProGlnA : 174 |||! !||| ! !:!|||!!.!.!|||||| !!!:!!!: ||||||:!! !!|||. AsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnT 300190 : AATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAA : 300247 175 : laSerProAsnTyrGluIleIlePhePheValHisCysLeuSerGlyLeuIleGlnTy : 193 !!||||||!.!|||||||||:::|||||| ||||||.!!:!!!.!:!!|||..!|| hrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTy 300248 : CCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTA : 300304 194 : rThrIleThrSerAlaMetTyrSerLeuAlaAlaIlePheValThrHisIleCysGly : 212 |!.!:!:|||!!!||| !||||||||||||||||||||||||||||||||||||||| rAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGly 300305 : CAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGA : 300361 213 : ArgIleGluIleGlnIleSerArgLeuAspGluLeuIleGluGlySerGluGluLysP : 232 !:!|||:!!||||||!!::!!||||||!!:!!:|||:!:||| !!!!!! !|||||| GlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrGlyGluLysA 300362 : CAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGGGAGAGAAGG : 300421 233 : roIlePheTyrAspArgLeuGlyIleIleIleGlnGluHisAlaGluValLeuArgPh : 251 ! ! ! !|||! !|||! !:!!|||:!!!:!!!:|||!.!:!!|||||||||! spAspGlyProAspProLeuValValIleValArgAspHisValLysValLeuArg** 300422 : ACGACGGTCCTGATCCTTTGGTCGTTATCGTTCGAGATCACGTGAAGGTTTTAAGGTA : 300478 252 : eSerLysAspValGluAlaAlaLeuArgGluLeuAsnLeuThrGluValAlaGluSer : 270 ..!!:! ! ! !.! !:!! !!..! ! |||..!..! !.!!:!!..! *GluArgArg***PheGlyArgIle***ArgGly***LeuValArg***ThrLysGlu 300479 : AGAGAGACGTTGATTCGGGAGAATTTGACGAGGTTGATTGGTTAGGTGAACGAAAGAG : 300535 271 : >>>> Target Intron 1 >>>> AlaValIleMetCysValLeuGluPheTy : 280 1193 bp :!!|||! !:!: ! !!!!:!!!:! ++ +-SerValAsnValValHisPheGlnTyrIl 300536 : gt.........................acTCTGTTAACGTCGTTCACTTTCAATATAT : 301758 281 : rCysMetIleGluTrpArgArgSerAspAlaIleAlaLeuLeuThrTyrPheThrLeu : 299 ! !!!::!: ! |||||| |||:!!.!! ! ! !||||||!!. !! ! eHisIleLeuLeuHisArgArg---AspSerPheArgThrGlyThrTyrLeuGln*** 301759 : TCATATTCTGCTACATCGGCGA---GATTCTTTCCGAACAGGTACTTACTTACAGTAG : 301812 300 : LeuValSerPheThrPheAsnIleMetIlePheCysTyrValGlyGluLeuLeuSerG : 319 ||| ||||||:!!.!. ! ! !! !.!! :!! ! !!! LysPheProPheLeuPheAsnValPheProArgTyrLeuSerSerPheIleGlyArgA 301813 : AagtttccatttcttttcaatGTATTTCCACGGTATTTAAGCAGCTTTATTGGTCGTG : 301872 320 : luGlnCysSerArgMetGlyProAlaSerTyrAspIleGlnTrpTyrAsnLeuProPr : 338 !: !!||||||!:!!!:||| !!|||||||||!!:|||.!.||||||||||||||| ! sp***CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAl 301873 : ATTAGTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGC : 301929 339 : oArgArgAlaTyrAsnLeuIleLeuLeuSerAlaIleSerLeuGluProProLysLeu : 357 !!:!|||||||||:!!|||||||||||||||!.!||||||! ! ! |||||||||||| aLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeu 301930 : GAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTT : 301986 358 : ThrAlaGlyAsnIleIleAspLeuSerIleAsnThrPheGlyAlaValSer : 374 |||||||||!!.|||||||||||||||:!:|||||||||.!!:!!|||!:! ThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerValAsn 301987 : ACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTAAAT : 302039 vulgar: Lalb_14625 155 374 . KQ414889.1 300189 302039 + 421 M 13 39 G 0 3 M 102 306 5 0 2 I 0 1189 3 0 2 M 17 51 G 1 0 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300190 302039 421 + . gene_id 2 ; sequence Lalb_14625 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300190 300537 . + . KQ414889.1 exonerate:protein2genome:local exon 300190 300537 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300538 300539 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300538 301730 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301729 301730 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 301731 302039 . + . KQ414889.1 exonerate:protein2genome:local exon 301731 302039 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 300190 302039 421 + . alignment_id 2 ; Query Lalb_14625 ; Align 300190 156 39 ; Align 300232 169 306 ; Align 301731 271 51 ; Align 301782 289 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 345 Query range: 0 -> 227 Target range: 284514 -> 285210 1 : AspValAsnTyrThrLeuGluMetCysArgTrpLeuLeuLysIleLeuGlyValTrpT : 20 ||| !! |||!:!:!!:!!||| !||||||!!!|||||| :!!||||||||| AspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpP 284515 : GATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGC : 284572 21 : hrLeuValTyrHisArgIleSerLysSerAspArgAlaLeuCysThrAlaThrLeuAl : 39 !!||| ! ! ! !! !!!! !..! ! ! !::!! ! ..! !.!!||| roLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIl 284573 : CTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAAT : 284629 40 : aThrCysIleGlyIleLeuSerPheThrIleLeuProSerLeuTyrSerValIlePhe : 58 !!:!|||.!! !||| !! !.!! !:!!! ! !:!!|||! !!!!|||:!! ! eSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAsp 284630 : CAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGAC : 284686 59 : ThrLysAsnSerThrAspThrIleIleLysLeuLeuGlyProValGlyLeuCysSerP : 78 ! !! ..!..! !||||||! ||||||:!!:!!||||||:!!.!!!!!|||! !. LysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetM 284687 : AAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGA : 284746 79 : heCysThrValLysTyrMetTyrLeuIleLeuLysGlyLysSerLeuGlyArgCysVa : 97 !.....!!:!!|||||| !||||||! !:::||| !.!:!!|||!:!||||| etAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysVa 284747 : TGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGT : 284803 98 : lGlnHisLeuGluArgAspTrpGluMetVal<-><-><->ThrHisProGlyHisArg : 113 |:!! !!:!!... !||||||...:!:..! !::... ...||| lLysAspIleArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArg 284804 : GAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagaga : 284860 114 : SerIleMetLeuLysTyrSerSerIleSerArgLysLeuIleValLeuCysValValP : 133 ...|||||| ! ! !:!!!!!|||.!!|||...||| :!!!!!|||!.!! !| GluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyP 284861 : gagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTT : 284920 134 : heLeuTyrSerGlyGlyLeuSerTyrHisThrValLysGlnLeuIleThr<->LysAs : 151 ||:!!||||||||||||!!!! !||| !||||||! !! !||| !||| ::: heMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgTh 284921 : TCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCAC : 284977 152 : pGluSerThrLeuAsnSerThrGluArgProPheValTyrProCysPheGlu<->Phe : 169 |||! !! ! !|||..!|||! !||| !! !.!!:!||| !!:!... .!! rGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeu 284978 : GGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTT : 285034 170 : IleAsnProGlnAlaSerProAsnTyrGluIleIlePhePheValHisCysLeuSerG : 189 :!!:!!|||!::.!!||||||:::!:!||||||:!: |||:!!!!.||||||:!!! LeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaA 285035 : CTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCG : 285094 190 : lyLeuIleGlnTyrThrIleThrSerAlaMetTyrSerLeuAlaAlaIlePheValTh : 208 .!!!!:!! !|||:!!:!!||| !!.! ! !||||||||||||:!:||||||! laPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMe 285095 : CGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCAT : 285151 209 : rHisIleCysGlyArgIleGluIleGlnIleSerArgLeuAspGluLeuIleGluGly : 227 !|||:!!||||||!:!.!!..!|||! :!:!!!!:!||||||:!!|||:!!!!:||| tHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGly 285152 : GCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGA : 285208 vulgar: Lalb_14625 0 227 . KQ414889.1 284514 285210 + 345 M 107 321 G 0 9 M 42 126 G 0 3 M 19 57 G 0 3 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284515 285210 345 + . gene_id 3 ; sequence Lalb_14625 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284515 285210 . + . KQ414889.1 exonerate:protein2genome:local exon 284515 285210 . + . insertions 15 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284515 285210 345 + . alignment_id 3 ; Query Lalb_14625 ; Align 284515 1 321 ; Align 284845 108 126 ; Align 284974 150 57 ; Align 285034 169 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 326 Query range: 0 -> 227 Target range: 278567 -> 279263 1 : AspValAsnTyrThrLeuGluMetCysArgTrpLeuLeuLysIleLeuGlyValTrpT : 20 ||| !! |||!:!:!!:!!||| !||||||!!!|||||| :!!||||||||| AspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpP 278568 : GATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGC : 278625 21 : hrLeuValTyrHisArgIleSerLysSerAspArgAlaLeuCysThrAlaThrLeuAl : 39 !!||| ! ! ! !! !!!! !..! ! ! !::!! ! ..! !.!!||| roLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIl 278626 : CTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAAT : 278682 40 : aThrCysIleGlyIleLeuSerPheThrIleLeuProSerLeuTyrSerValIlePhe : 58 !!:!|||.!! !||| !! !.!! !:!!! ! !:!!|||! !!!!|||:!! ! eSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAsp 278683 : CAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGAC : 278739 59 : ThrLysAsnSerThrAspThrIleIleLysLeuLeuGlyProValGlyLeuCysSerP : 78 ! !! ..!..! !||||||! ||||||:!!:!!||||||:!!.!!!!!|||!!!. LysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrM 278740 : AAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGA : 278799 79 : heCysThrValLysTyrMetTyrLeuIleLeuLysGlyLysSerLeuGlyArgCysVa : 97 !....|||:!!|||||| !|||!!:! !:::||| !.!:!!|||!:!||||| etAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysVa 278800 : TGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGT : 278856 98 : lGlnHisLeuGluArgAspTrpGluMetVal<-><-><->ThrHisProGlyHisArg : 113 |.!. !!:!!...! !||||||...:!:..! ... ...||| lAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArg 278857 : GAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagaga : 278913 114 : SerIleMetLeuLysTyrSerSerIleSerArgLysLeuIleValLeuCysValValP : 133 ...|||||| ! ! !:!!!!!|||.!!|||...||| :!!!!! !!!.!! !| GluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyP 278914 : gagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTT : 278973 134 : heLeuTyrSerGlyGlyLeuSerTyrHisThrValLysGlnLeuIle<->ThrLysAs : 151 ||:!!||||||||||||:!!! !||| !.!!|||! !! !|||.!! ..!::: heMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgTh 278974 : TCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCAC : 279030 152 : pGluSerThrLeuAsnSerThrGluArgProPheValTyrProCysPheGlu<->Phe : 169 |||! !! ! !|||..!|||! !||| !! !.!!:!||| !!:!... .!! rGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeu 279031 : GGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTC : 279087 170 : IleAsnProGlnAlaSerProAsnTyrGluIleIlePhePheValHisCysLeuSerG : 189 :!!:!!|||!::.!!||||||:::!:!||||||:!: |||:!!!!.||||||:!!! LeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaA 279088 : CTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCG : 279147 190 : lyLeuIleGlnTyrThrIleThrSerAlaMetTyrSerLeuAlaAlaIlePheValTh : 208 .!!!!:!! !|||:!!:!!||| !!.! ! !|||||| !|||:!:||||||! laPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMe 279148 : CGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCAT : 279204 209 : rHisIleCysGlyArgIleGluIleGlnIleSerArgLeuAspGluLeuIleGluGly : 227 !|||:!!||||||!:!.!!..!|||! :!:!!!!:!||||||:!!||||||!!:||| tHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGly 279205 : GCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGA : 279261 vulgar: Lalb_14625 0 227 . KQ414889.1 278567 279263 + 326 M 107 321 G 0 9 M 41 123 G 0 3 M 20 60 G 0 3 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278568 279263 326 + . gene_id 4 ; sequence Lalb_14625 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278568 279263 . + . KQ414889.1 exonerate:protein2genome:local exon 278568 279263 . + . insertions 15 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278568 279263 326 + . alignment_id 4 ; Query Lalb_14625 ; Align 278568 1 321 ; Align 278898 108 123 ; Align 279024 149 60 ; Align 279087 169 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 318 Query range: 2 -> 250 Target range: 266634 -> 267390 3 : AsnTyrThrLeuGluMetCysArgTrpLeuLeuLysIleLeuGlyValTrpThrLeuV : 22 :!!|||!:!|||:!!:!! !||||||!!!|||||| !:!!|||!.!||| !!! !: AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProL 266635 : GATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGT : 266692 23 : alTyrHisArgIleSerLysSerAspArgAlaLeuCysThrAlaThrLeuAlaThrCy : 41 !! ! !! !|||||| !!!:||| !:!!! ! !||| !:!!!.!! !|| eu---SerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCy 266693 : TG---TCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTG : 266746 42 : sIleGlyIleLeuSerPheThrIleLeuProSerLeuTyrSerValIlePheThrLys : 60 | ! !! !:!! !||||||:!!:!!|||!!!|||!:! !:!!:!!.!. ! ! sTyrCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAsp 266747 : CTACTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGAC : 266803 61 : AsnSerThrAspThrIleIleLysLeuLeuGlyProValGlyLeuCysSerPheCysT : 80 .!.|||! ! !|||! !:!:|||:!!!!!||||||:!!.!!! !!! ! ! !! ! GluSerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyG 266804 : GAGAGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAG : 266863 81 : hrValLysTyrMetTyrLeuIleLeuLysGlyLysSerLeuGlyArgCysValGlnHi : 99 !:!!!!.|||! |||:!:|||:::.!!|||..!:!! !! !!||||||:!!|| lyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHi 266864 : GAATTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCA : 266920 100 : sLeuGluArgAspTrpGluMetValThrHisProGlyHisArgSerIleMetLeuLys : 118 |:!!:!!! !||||||..!!!:||||||...|||! ! !!!:!..!:!:||||||||| sMetGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLys 266921 : CATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAG : 266977 119 : TyrSerSerIleSerArgLysLeuIleValLeuCysValValPheLeuTyrSerGlyG : 138 !!:!!!!!|||.!!||| ! :!! !:!!!!!|||!.!!.!|||:!! ! !!!|||! AsnAlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyV 266978 : AACGCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTG : 267037 139 : lyLeuSerTyrHisThrValLysGlnLeuIleThrLysAspGluSerThrLeuAsnSe : 157 !|||.!!||| !..!:!!! ! !!!!! !! !:!! !! !..!..! !|||.. alLeuGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGl 267038 : TTCTCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGA : 267094 158 : rThrGluArgProPheValTyrProCysPhe<-><-><->GluPheIleAsnProGln : 173 !|||..!! ! ! !:!!! |||||| :!!.!.||| !.!. uThrArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAsp 267095 : GACTAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGAT : 267151 174 : AlaSerProAsnTyrGluIleIlePhePheValHisCysLeuSerGlyLeuIleGlnT : 193 .!!||||||!.. !!||||||:!!.!! !! !!!.! !:!!||||||!!!||| ! ThrSerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValA 267152 : ACCAGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGA : 267211 194 : yrThrIleThrSerAlaMetTyrSerLeuAlaAlaIlePheValThrHisIleCysGl : 212 !!:!!! !..! !!.! !:!||||||||||||:!:|||!.!.!!||| ||||| snSerSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGl 267212 : ATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGG : 267268 213 : yArgIleGluIleGlnIleSerArgLeuAspGluLeuIleGluGlySerGluGlu<-> : 231 |!:!:!:...:!:! !!!:! ! !!:!! ! |||!!!:!:.!. !!|||..!!!: yGlnLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSer 267269 : ACAGCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGC : 267325 232 : <->LysProIlePheTyrAspArgLeuGlyIleIleIleGlnGluHisAlaGluValL : 249 ||| !:!!! !!:!|||!:!:!!|||:!::!!:!!:!!.!.||| !..!|||| AsnLysAsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValL 267326 : AATAAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTT : 267385 250 : euArg : 250 ||||| euArg 267386 : TGAGG : 267390 vulgar: Lalb_14625 2 250 . KQ414889.1 266634 267390 + 318 M 20 60 G 1 0 M 144 432 G 0 9 M 63 189 G 0 6 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266635 267390 318 + . gene_id 5 ; sequence Lalb_14625 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266635 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266635 267390 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 266635 267390 318 + . alignment_id 5 ; Query Lalb_14625 ; Align 266635 3 60 ; Align 266695 24 432 ; Align 267136 168 189 ; Align 267331 231 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 316 Query range: 0 -> 251 Target range: 221369 -> 222131 1 : AspValAsnTyrThrLeuGluMetCysArgTrpLeuLeuLysIleLeuGlyValTrpT : 20 :!!|||!!.! !:!:!!:!!:!! !!||||||:!!|||||| :!!||||||||| AsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleGlyValTrpP 221370 : AACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTGGC : 221427 21 : hrLeuValTyrHisArgIleSerLysSerAspArgAlaLeuCysThrAlaThrLeuAl : 39 !! ! ! !:!! ||||||! ! !!!:||| !|||! ! ! !! ! !!. roAsnSerAlaAsn---IleSerThrValGluArgTyrLeuTyrTrpLeuIleAsnVa 221428 : CAAATTCAGCCAAC---ATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAACGT : 221481 40 : aThrCysIleGlyIleLeuSerPheThrIleLeuProSerLeuTyrSerValIlePhe : 58 !..!||| !.!!:!::!!!!!||| !:!::!!|||!!! ! !! !||||||.!! lValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyrValIleLeu 221482 : CGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTC : 221538 59 : ThrLysAsnSerThrAspThrIleIleLysLeuLeuGlyProValGlyLeuCysSerP : 78 ! !.!...!..! !!!.!! !||||||||||||||||||:!!.!!!!!||| !. GluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysValM 221539 : GAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGA : 221598 79 : heCysThrValLysTyrMetTyrLeuIleLeuLysGlyLysSerLeuGlyArgCysVa : 97 !.... !:!!|||||| ||||||||| ! ! !!!...!:!! !!..!|||:! etAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCysIl 221599 : TGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTGCAT : 221655 98 : lGlnHisLeuGluArgAspTrpGluMetValThrHisProGlyHisArgSerIleMet : 116 !:!!!.!:!!||| !!||||||:!!! :!!|||:!! !! ! !!!:!..!|||||| eGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLysAspIleMet 221656 : CGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAGGATATAATG : 221712 117 : LeuLysTyrSerSerIleSerArgLysLeuIleValLeuCysValValPheLeuTyrS : 136 :!!:!! !!:!!! !.!!.!!|||::!||||||:!!:!!|||..! !!|||:!!|||| IleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheMetTyrS 221713 : ATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGTACA : 221772 137 : erGlyGlyLeuSerTyrHis<->ThrValLysGlnLeuIleThrLys<->AspGluSe : 153 ||||| ::: |||::: .!!:!! ! !:!: !||| !! !.. erGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIleProAlaGl 221773 : GTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGCGCA : 221829 154 : rThrLeuAsnSerThrGluArgProPheValTyrProCysPheGluPheIle<->Asn : 171 ! !:::||| ||| |||.!.|||!:!|||! !! ..!|||||| :!! nAspValAsnValThrPheIleProMetValPheProPheSerArgPheIleValAsp 221830 : GGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTCGAT : 221886 172 : ProGlnAlaSerProAsnTyrGluIleIlePhePheValHisCysLeuSerGlyLeuI : 191 !!!:! !|||||| !!||||||:!:|||! :!!!!. !:!!:!!||| !: ThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyAlaL 221887 : ACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTGCTT : 221946 192 : leGlnTyrThrIleThrSerAlaMetTyrSerLeuAlaAlaIlePheValThrHisIl : 210 !:..!:!!!:!|||||||||||| ! !||||||!.!|||!!:|||!.!..!||| euMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaValHisAl 221947 : TGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCACGC : 222003 211 : eCysGlyArgIleGluIleGlnIleSerArgLeuAspGluLeuIleGluGlySerGlu : 229 !||||||!:!!!::!!:!: !!!:||| !!||| ! .!.||||||.!.||| !!! ! aCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsnGlyArgAla 222004 : TTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGCCGGGCG : 222060 230 : GluLysProIlePheTyrAsp<->ArgLeuGlyIleIleIleGlnGluHisAlaGluV : 248 !!:! ! !! ! ! ||| |||:!!!.!! |||:!:.!.:!!|||!.!..!: AspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnHisValArgI 222061 : GATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAACACGTTCGAA : 222120 249 : alLeuArgPhe : 251 !!|||!:!!:! leLeuGlnTyr 222121 : TATTGCAGTAT : 222131 vulgar: Lalb_14625 0 251 . KQ414889.1 221369 222131 + 316 M 24 72 G 1 0 M 117 351 G 0 3 M 8 24 G 0 3 M 20 60 G 0 3 M 66 198 G 0 3 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221370 222131 316 + . gene_id 6 ; sequence Lalb_14625 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221370 222131 . + . KQ414889.1 exonerate:protein2genome:local exon 221370 222131 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221370 222131 316 + . alignment_id 6 ; Query Lalb_14625 ; Align 221370 1 72 ; Align 221442 26 351 ; Align 221796 143 24 ; Align 221823 151 60 ; Align 221886 171 198 ; Align 222087 237 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 315 Query range: 0 -> 250 Target range: 217165 -> 217924 1 : AspValAsnTyrThrLeuGluMetCysArgTrpLeuLeuLysIleLeuGlyValTrpT : 20 ::::::||| ::!:!!:!! ! !||||||||||||||| :!!|||:!!||| AsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpP 217166 : aatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGC : 217223 21 : hrLeuValTyrHisArgIleSerLysSerAspArgAlaLeuCysThrAlaThrLeuAl : 39 !! !! !.!! !! !!!!!:!||| !:! !|||! !! ! !! ! !|| ro---AsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAl 217224 : CA---AACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGC : 217277 40 : aThrCysIleGlyIleLeuSerPheThrIleLeuProSerLeuTyrSerValIlePhe : 58 | !||| !|||:!::!!|||||| !.!!:!!|||!!!! ! ! !|||.!!.!! aLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeu 217278 : CTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTC : 217334 59 : ThrLysAsnSerThrAspThrIleIleLysLeuLeuGlyProValGlyLeuCysSerP : 78 ! .!...! ! !! !! :!:||||||!!!||||||:!! !!!!||| !. GluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValM 217335 : GAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGA : 217394 79 : heCysThrValLysTyrMetTyrLeuIleLeuLysGlyLysSerLeuGlyArgCysVa : 97 !.... !||||||||| ! !||||||:!! ! ! !..!:!! !!..!||||| etAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCysVa 217395 : TGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGT : 217451 98 : lGlnHisLeuGluArgAspTrpGluMetValThrHisProGlyHisArgSerIleMet : 116 |::!...:!!||||||||||||..!! |||! ! ! ! ! !!|||..! ||| lArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArgGluAlaMet 217452 : GAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATG : 217508 117 : LeuLysTyrSerSerIleSerArgLysLeuIleValLeuCysValValPheLeuTyrS : 136 :!! ! !!:!!!:!.!!.!!|||||||||:!!:!!||||||..! !!|||:!!|||| IleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrS 217509 : ATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACA : 217568 137 : erGlyGlyLeuSerTyrHisThrValLysGlnLeuIleThrLysAsp<-><->GluSe : 153 ||||| ::: |||::: !!.!! !! !:!!! !..! ! ..!.. erGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGl 217569 : GCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGA : 217625 154 : rThrLeuAsnSerThrGluArgProPheValTyrProCysPheGluPhe<->IleAsn : 171 !!.! !||| !||| ! !|||!!.|||!:!|||! ! :!!!:! |||:!! uAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyrIleIleAsp 217626 : GAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGAT : 217682 172 : ProGlnAlaSerProAsnTyrGluIleIlePhePheValHisCysLeuSerGlyLeuI : 191 !!!:: !!!!|||!.. !!||||||:!:||||||:!!!!.! :!!:!!||| !: ThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaL 217683 : ACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTT : 217742 192 : leGlnTyrThrIleThrSerAlaMetTyrSerLeuAlaAlaIlePheValThrHisIl : 210 !:..!:!! !|||||||||||| ! !|||||||||||| !|||!.!..!||| euMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAl 217743 : TGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGC : 217799 211 : eCysGlyArgIleGluIleGlnIleSerArgLeuAspGluLeuIleGluGlySerGlu : 229 !||||||!:!||||||:!: !!!:!:! !!|||.!..!.||||||!!:|||!!!! ! aCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgAla 217800 : CTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGAGCG : 217856 230 : GluLysProIlePheTyrAsp<->ArgLeuGlyIleIleIleGlnGluHisAlaGluV : 248 !!:! ! ! ! ! ||| |||:!!!.!! !|||:!!...:!!|||!.!..!: AspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnHisValArgI 217857 : GATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGA : 217916 249 : alLeuArg : 250 !!|||!:! leLeuLys 217917 : TATTAAAG : 217924 vulgar: Lalb_14625 0 250 . KQ414889.1 217165 217924 + 315 M 20 60 G 1 0 M 130 390 G 0 6 M 18 54 G 0 3 M 67 201 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217166 217924 315 + . gene_id 7 ; sequence Lalb_14625 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217166 217924 . + . KQ414889.1 exonerate:protein2genome:local exon 217166 217924 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217166 217924 315 + . alignment_id 7 ; Query Lalb_14625 ; Align 217166 1 60 ; Align 217226 22 390 ; Align 217622 152 54 ; Align 217679 170 201 ; Align 217883 237 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 309 Query range: 2 -> 250 Target range: 274380 -> 275136 3 : AsnTyrThrLeuGluMetCysArgTrpLeuLeuLysIleLeuGlyValTrpThrLeuV : 22 :!!|||!:!|||:!!:!! !||||||!!!|||||| !:!!|||!.!||| !!|||! AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuA 274381 : GACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAG : 274438 23 : alTyrHisArgIleSerLysSerAspArgAlaLeuCysThrAlaThrLeuAlaThrCy : 41 .! ! !! !!!!|||! !!!:||| !|||! ! ::: || la---SerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCy 274439 : CC---TCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttg : 274492 42 : sIleGlyIleLeuSerPheThrIleLeuProSerLeuTyrSerValIlePheThrLys : 60 | ! !!.!!:!! !! !|||:!!:!!||||||:!!!:! !:!!|||.!...! ! sTyrCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAsp 274493 : ctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGAT : 274549 61 : AsnSerThrAspThrIleIleLysLeuLeuGlyProValGlyLeuCysSerPheCysT : 80 .!.||| ! !! !! :!:|||||||||||||||:!!|||! !!! ! !.!! ! GluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyG 274550 : GAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAG : 274609 81 : hrValLysTyrMetTyrLeuIleLeuLysGlyLysSerLeuGlyArgCysValGlnHi : 99 !:!!!!.|||! |||:!:|||:::.!!|||..!:!! !! !!||||||:!!|| lyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHi 274610 : GAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCA : 274666 100 : sLeuGluArgAspTrpGluMetValThrHisProGlyHisArgSerIleMetLeuLys : 118 |:!!:!!! !||||||..!!!:||||||...|||! ! !!!:!..!:!:||||||||| sMetGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLys 274667 : CATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAG : 274723 119 : TyrSerSerIleSerArgLysLeuIleValLeuCysValValPheLeuTyrSerGlyG : 138 !!:!!!.!|||.!!||| ! :!! :!!!!!|||!.!!.!|||:!! ! !!!|||! AsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyV 274724 : AACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTG : 274783 139 : lyLeuSerTyrHisThrValLysGlnLeuIleThrLysAspGluSerThrLeuAsnSe : 157 !|||!!!||| !..!:!!! ! !!!!! !! !:!! !! ..!..! !|||.. alLeuCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGl 274784 : TTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGA : 274840 158 : rThrGluArgProPheValTyrProCysPheGluPhe<-><-><->IleAsnProGln : 173 !|||..!! ! ! !:!!! |||||| ! !:! :!! !.!. uThrArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAsp 274841 : GACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGAC : 274897 174 : AlaSerProAsnTyrGluIleIlePhePheValHisCysLeuSerGlyLeuIleGlnT : 193 .!!||||||!.. !!||||||:!!.!! ! !!!.! !:!!||||||!!!||| ! ThrSerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValA 274898 : ACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGA : 274957 194 : yrThrIleThrSerAlaMetTyrSerLeuAlaAlaIlePheValThrHisIleCysGl : 212 !!:!!! !.!! !!.! !:!||||||||||||:!:|||!.!.!!||| !! !|| snSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGl 274958 : ATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGG : 275014 213 : yArgIleGluIleGlnIleSerArgLeuAspGluLeuIleGluGlySer<-><->Glu : 229 |!:!:!:...:!:! !!!:! ! !!:!! !|||!!!:!:.!. !||| ::: yGlnLeuSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGln 275015 : CCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcag : 275071 230 : GluLysProIlePheTyrAspArgLeuGlyIleIleIleGlnGluHisAlaGluValL : 249 ...||| :::::::::..!..!:!!|||:!::!!:!!:!!.!.||| !..!|||| AsnLysAsnValTyrPheSerGluIleGlyValValValGluHisHisLeuArgValL 275072 : aataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTAC : 275131 250 : euArg : 250 ||||| euArg 275132 : TCAGG : 275136 vulgar: Lalb_14625 2 250 . KQ414889.1 274380 275136 + 309 M 20 60 G 1 0 M 146 438 G 0 9 M 59 177 G 0 6 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274381 275136 309 + . gene_id 8 ; sequence Lalb_14625 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274381 275136 . + . KQ414889.1 exonerate:protein2genome:local exon 274381 275136 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 274381 275136 309 + . alignment_id 8 ; Query Lalb_14625 ; Align 274381 3 60 ; Align 274441 24 438 ; Align 274888 170 177 ; Align 275071 229 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 297 Query range: 1 -> 251 Target range: 212866 -> 213625 2 : ValAsnTyrThrLeuGluMetCysArgTrpLeuLeuLysIleLeuGlyValTrpThrL : 21 |||||| :::::: ! ! !||||||||||||||| ! !|||:!!||| !! ValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProA 212867 : gtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCG : 212924 22 : euValTyrHisArgIleSerLysSerAspArgAlaLeuCysThrAlaThrLeuAlaTh : 40 ! !! !:!! :!!||| !! !!!:!:! !:!!..! ! !..! !.!!.. spLysSerTyr---ValSerProIleGluLysAsnIleAlaArgLeuValAsnThrVa 212925 : ACAAGTCCTAC---GTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGT : 212978 41 : rCysIleGlyIleLeuSerPheThrIleLeuProSerLeuTyrSerValIlePheThr : 59 !||| !|||:!::!!.!!!:! !:!!:!!|||!!! !! ! !|||.!!.!! ! lCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuAsp 212979 : TTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGAC : 213035 60 : LysAsnSerThrAspThrIleIleLysLeuLeuGlyProValGlyLeuCysSerPheC : 79 !...::: |||:!!|||!!!||| ! !!!.!!!!||| ! !. ValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaA 213036 : GTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTG : 213095 80 : ysThrValLysTyrMetTyrLeuIleLeuLysGlyLysSerLeuGlyArgCysValGl : 98 .. ! !|||||| ! ||||||||| ! ||| ! ..!:!! !!! !||||||:! laLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysValGl 213096 : CGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGA : 213152 99 : nHisLeuGluArgAspTrpGluMetValThrHisProGlyHisArgSerIleMetLeu : 117 !|||:!!:!! !||||||:!!! :!!|||||| !! ! !!!:!..!|||||| ! uHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetAla 213153 : GCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCG : 213209 118 : LysTyrSerSerIleSerArgLysLeuIleValLeuCysValValPheLeuTyrSerG : 137 ! !!:!!|||.!!.!!!:!!:!:!!:!:..!:!!|||!.! !!|||:!!|||!!!| LeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPhePheMetTyrThrG 213210 : TTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAG : 213269 138 : lyGlyLeuSerTyrHisThrValLysGlnLeuIleThrLysAsp<-><->GluSerTh : 154 || ! !! !||| ! !||| !! !:!!! !.!! ! ! ! !..! lyPheThrPheTyrPheLeuValValProIleSerAlaAspLysMetValAlaGluAs 213270 : GTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGA : 213326 155 : rLeuAsnSerThrGluArgProPheValTyrProCysPheGluPheIle<->AsnPro : 172 !|||||| !||| |||! !.!.||| !||| !! ..!|||||| :!! ! pLeuAsnValThrPheArgGlnMetValValProValSerArgPheIleValAspVal 213327 : TCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTT : 213383 173 : GlnAlaSerProAsnTyrGluIleIlePhePheValHisCysLeuSerGlyLeuIleG : 192 !:! !|||||| !!||||||.!!|||!!.:!!!!. !:!!:!!|||:!!:!: ArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuI 213384 : CGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGA : 213443 193 : lnTyrThrIleThrSerAlaMetTyrSerLeuAlaAlaIlePheValThrHisIleCy : 211 :!!.!!|||.!! !!.! ! !||||||||||||:!:|||!.!..!||| !|| leHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCy 213444 : TTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTG : 213500 212 : sGlyArgIleGluIleGlnIleSerArgLeuAspGluLeuIleGluGlySerGluGlu : 230 ||||!:!!!:! ||| !!!:||| !!|||!!:.!.||||||!!:|||!!!|||!!: sGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGlyArgGluAsp 213501 : CGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGTAGAGAGGAT : 213557 231 : <->LysProIlePheTyrAspArgLeuGlyIleIleIleGlnGluHisAlaGluValL : 249 !.. !! ! ! !!||||||:!!!.!:!!|||:!:.!.:!!|||!.!..!:!!| MetSerLysAsnValAspAspArgIleAlaValIleValAsnGlnHisValArgIleL 213558 : ATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATAC : 213617 250 : euArgPhe : 251 ||!:!!:: euLysTrp 213618 : TGAAGTGG : 213625 vulgar: Lalb_14625 1 251 . KQ414889.1 212866 213625 + 297 M 23 69 G 1 0 M 126 378 G 0 6 M 19 57 G 0 3 M 60 180 G 0 3 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212867 213625 297 + . gene_id 9 ; sequence Lalb_14625 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212867 213625 . + . KQ414889.1 exonerate:protein2genome:local exon 212867 213625 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212867 213625 297 + . alignment_id 9 ; Query Lalb_14625 ; Align 212867 2 69 ; Align 212936 26 378 ; Align 213320 152 57 ; Align 213380 171 180 ; Align 213563 231 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 285 Query range: 0 -> 181 Target range: 294678 -> 295227 1 : AspValAsnTyrThrLeuGluMetCysArgTrpLeuLeuLysIleLeuGlyValTrpT : 20 |||||| !!!:!|||:!! |||||| !!||||||||| :!!|||:!!||| AspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpP 294679 : GACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGC : 294736 21 : hrLeuValTyrHisArgIleSerLysSerAspArgAlaLeuCysThrAlaThrLeuAl : 39 !!|||:!!||| !!.!! !|||||| !:!!!:!!.!|||! ! ! ! !:!!|| roLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAl 294737 : CACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGC : 294793 40 : aThrCysIleGlyIleLeuSerPheThrIleLeuProSerLeuTyrSerValIlePhe : 58 | !|||! !! !:!! !|||..!:!!:!!|||!!! !|||! ! !:!!||| aTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCysValPhe 294794 : GTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTC : 294850 59 : ThrLysAsnSerThrAspThrIleIleLysLeuLeuGlyProValGlyLeuCysSerP : 78 ! ...:::... !!:|||||||||||||||||| !! !! !! !. HisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetL 294851 : CACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGC : 294910 79 : heCysThrValLysTyrMetTyrLeuIleLeuLysGlyLysSerLeuGlyArgCysVa : 97 !!! !! !:!!!:!|||! ! !|||:!!|||||| ! :!!!!! !!.!|||:! euSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCysIl 294911 : TCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCAT : 294967 98 : lGlnHisLeuGluArgAspTrpGluMetValThrHisProGlyHisArgSerIleMet : 116 !:!! !!:!!|||!.!||||||:!!:!!:!! !:!!|||! !||||||:!!|||||| eGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIleMet 294968 : CGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATG : 295024 117 : LeuLysTyrSerSerIleSerArgLysLeuIleValLeuCysValValPheLeuTyrS : 136 :!!||| !!:!!! !:!!!!!!:!!:!:!!! !||| !! !..!:!!.!.:!!|||| IleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleIleTyrS 295025 : ATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACA : 295084 137 : erGlyGlyLeuSerTyrHisThrValLysGlnLeuIleThrLysAsp<->GluSerTh : 154 ||..!!.!:!!|||||||||.!!:!! ......:::... |||!:!! erSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGluAsnLy 295085 : GTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGAGAACAA : 295141 155 : rLeuAsnSerThrGluArgProPheValTyrProCysPheGlu<->PheIleAsnPro : 172 ! !|||!:!||| ||| !!!!. ! !||| !!!:!||| |||:!!:!! !! sLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheValAspAla 295142 : GAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCT : 295198 173 : GlnAlaSerProAsnTyrGluIleIle : 181 ! :!!||||||!.!|||||||||||| TyrSerSerProThrTyrGluIleIle 295199 : TATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: Lalb_14625 0 181 . KQ414889.1 294678 295227 + 285 M 151 453 G 0 3 M 17 51 G 0 3 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294679 295227 285 + . gene_id 10 ; sequence Lalb_14625 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294679 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294679 295227 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294679 295227 285 + . alignment_id 10 ; Query Lalb_14625 ; Align 294679 1 453 ; Align 295135 152 51 ; Align 295189 169 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 283 Query range: 283 -> 375 Target range: 291368 -> 292557 284 : GluTrpArgArgSerAspAlaIleAlaLeuLeuThrTyrPheThrLeuLeuValSerP : 303 ||||||..!!!!||||||:!!|||!.!:!!||||||||| !!|||||||||..!|||| GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 304 : heThrPheAsnIleMetIlePheCysTyrValGlyGluLeuLeuSerGluGln >>> : 321 ||||||||||||||:!!||||||||||||||||||||||||||| !! !||| heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln++ 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAGgt... : 291482 322 : > Target Intron 1 >>>> CysSerArgMetGlyProAlaSerTyrAspIleG : 332 913 bp !!|||..!!!:!.!! !||||||||||||! !: ++GlySerGluIleAlaHisAlaSerTyrAspThrG 291483 : ......................agGGTAGTGAAATCGCGCACGCTTCCTACGATACAG : 292426 333 : lnTrpTyrAsnLeuProProArgArgAlaTyrAsnLeuIleLeuLeuSerAlaIleSe : 351 !!||||||||||||||| !|||!:!||| !:!!:!!:!!|||:!! !||||||!! luTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIleTh 292427 : AATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAAC : 292483 352 : rLeuGluProProLysLeuThrAlaGlyAsnIleIleAspLeuSerIleAsnThrPhe : 370 ! !.!.||| !|||||||||||||||!!.|||.!!! !||||||:!:||||||||| rLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPhe 292484 : GAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTT : 292540 371 : GlyAlaValSerAsp : 375 ||||||||| !!!!: GlyAlaValArgGlu 292541 : GGCGCTGTACGTGAA : 292557 vulgar: Lalb_14625 283 375 . KQ414889.1 291368 292557 + 283 M 37 111 5 0 2 I 0 909 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 292557 283 + . gene_id 11 ; sequence Lalb_14625 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292557 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292557 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 292557 283 + . alignment_id 11 ; Query Lalb_14625 ; Align 291369 284 111 ; Align 292393 321 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 280 Query range: 0 -> 251 Target range: 232450 -> 233212 1 : AspValAsnTyrThrLeuGluMetCysArgTrpLeuLeuLysIleLeuGlyValTrpT : 20 ||| !.!.|||!:!:!!:!!:!! !||||||!!!|||! ! :!!|||!.!||| AspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpP 232451 : GACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGC : 232508 21 : hrLeuValTyrHisArgIleSerLysSerAspArgAlaLeuCysThrAlaThrLeuAl : 39 !!! !||| ..!! !|||!:!:!!.!.!:! !|||...! ! ! ! ! roArgVal---ThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLe 232509 : CGCGTGTT---ACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACT : 232562 40 : aThrCysIleGlyIleLeuSerPheThrIleLeuProSerLeuTyrSerValIlePhe : 58 !|||||| !..!:!::!!! !! !:!!|||:!!|||!!!:!! ! !:!!:!:||| uThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPhe 232563 : CACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTC : 232619 59 : ThrLysAsnSerThrAspThrIleIleLysLeuLeuGlyProValGlyLeuCysSerP : 78 ! ! !..||| !!!: !! !!:|||! !:!!||||||:!!.!!! !! ! !. GluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuM 232620 : GAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGA : 232679 79 : heCysThrValLysTyrMetTyrLeuIleLeuLysGlyLysSerLeuGlyArgCysVa : 97 !. !! !:!!!!.||| ! !|||:!: !|||!.!!!...!:!! ! !||||| etGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysVa 232680 : TGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGT : 232736 98 : lGlnHisLeuGluArgAspTrpGluMetValThrHisProGlyHisArgSerIleMet : 116 |:!!!!.:!!:!!!:!||||||..!! |||! ! ! |||! !||||||..!:!:||| lGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMet 232737 : GGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATG : 232793 117 : LeuLysTyrSerSerIleSerArgLysLeuIleValLeuCysValValPheLeuTyrS : 136 |||||| !!:!!!.!:!!.!!|||..!:!! ! !:!!..!!.! !!! !:!!:!!! LeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisT 232794 : TTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACA : 232853 137 : erGlyGlyLeuSerTyrHisThrValLysGlnLeuIleThrLysAspGluSerThrLe : 155 !!|||! ! !||| !!.!.! !|||! ! !||| !! !!.. ! !..! hrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGl 232854 : CCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGG : 232910 156 : uAsnSerThrGluArgProPheValTyrProCys<-><-><->PheGluPheIleAsn : 171 !|||..!!:! ! ! !!:! !! |||||| :!!.!.!!::!! yAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAsp 232911 : GAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGAC : 232967 172 : ProGlnAlaSerProAsnTyrGluIleIlePhePheValHisCysLeuSerGlyLeuI : 191 !!::! !||||||!.. !!||||||!!:||| !!:!!!!.||||||||||||!!!| ThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheI 232968 : ACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCA : 233027 192 : leGlnTyrThrIleThrSerAlaMetTyrSerLeuAlaAlaIlePheValThrHisIl : 210 || ! !!:!!:!!||| !!.! ! !.!!|||!.!|||:!!.!.!.!! !||| leValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAl 233028 : TCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGC : 233084 211 : eCysGlyArgIleGluIleGlnIleSerArgLeuAspGluLeuIleGluGly<->Ser : 228 ||||||!:!:!:.!.:!: !!!:|||!:!||||||!!:|||:!:!!:!.! .!! aCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGly 233085 : GTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGG : 233141 229 : GluGluLysProIlePheTyrAspArgLeuGlyIleIleIleGlnGluHisAlaGluV : 248 :!!|||:!! !:!! ! !:!||||||.!!|||:!::!!.!.||| !.... GlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgT 233142 : CAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTA : 233201 249 : alLeuArgPhe : 251 .!||||||!:! hrLeuArgTyr 233202 : CATTAAGGTAT : 233212 vulgar: Lalb_14625 0 251 . KQ414889.1 232450 233212 + 280 M 22 66 G 1 0 M 143 429 G 0 9 M 61 183 G 0 3 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232451 233212 280 + . gene_id 12 ; sequence Lalb_14625 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232451 233212 . + . KQ414889.1 exonerate:protein2genome:local exon 232451 233212 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 232451 233212 280 + . alignment_id 12 ; Query Lalb_14625 ; Align 232451 1 66 ; Align 232517 24 429 ; Align 232955 167 183 ; Align 233141 228 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 280 Query range: 99 -> 250 Target range: 304413 -> 304869 100 : LeuGluArgAspTrpGluMetValThrHisProGlyHisArgSerIleMetLeuLysT : 119 |||...! !! !::|||..!||| ! !! ! !! !!|||..!!!:|||||||||| LeuSerThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysT 304414 : CTCTCTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAAT : 304471 120 : yrSerSerIleSerArgLysLeuIleValLeuCysValValPheLeuTyrSerGlyGl : 138 ||.!!..!!!:.!!|||!!.|||! :!!:!!|||!.!:!!|||:!!|||!!!||||| yrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGl 304472 : ACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGG : 304528 139 : yLeuSerTyrHisThrValLysGlnLeuIleThrLysAsp<->GluSerThrLeuAsn : 156 | !! !||||||||||||! !|||!!! ||| ! ! !..! !! !||| yThrIleTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsn 304529 : CACCATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAAT : 304585 157 : SerThrGluArgProPheValTyrProCysPheGlu<->PheIleAsnProGlnAlaS : 175 !!||| !:!|||.!!||||||||| !!:!... !!..!!:!! !|||.!!| ArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrS 304586 : CGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAA : 304645 176 : erProAsnTyrGluIleIlePhePheValHisCysLeuSerGlyLeuIleGlnTyrTh : 194 |||||! !||||||:!::!!!:!||||||||||||:!!!!!|||! !:!! |||:! erProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSe 304646 : GCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTC : 304702 195 : rIleThrSerAlaMetTyrSerLeuAlaAlaIlePheValThrHisIleCysGlyArg : 213 !||||||:!!!.! ! !.!!|||||||||:!!|||!.!|||||| !||||||!:! rIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGln 304703 : TATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAA : 304759 214 : IleGluIleGlnIleSerArgLeuAspGluLeuIleGluGlySerGluGluLysProI : 233 |||!!:||| !!:|||||||||! !!!:|||:!! ..!|||:!!|||..! !! IleAspIleValMetSerArgLeuGlyAspLeuVal---AsnSerLysGluSerSerA 304760 : ATTGATATCGTTATGTCTCGATTGGGTGATCTTGTC---AACAGCAAAGAATCATCTG : 304816 234 : lePheTyrAspArgLeuGlyIleIleIleGlnGluHisAlaGluValLeuArg : 250 !!!. !! ! |||||| ! !|||:!!:!!.!.||| !..!:!!|||||| spLeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIleLeuArg 304817 : ATTTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTAAGG : 304869 vulgar: Lalb_14625 99 250 . KQ414889.1 304413 304869 + 280 M 52 156 G 0 3 M 17 51 G 0 3 M 57 171 G 1 0 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304414 304869 280 + . gene_id 13 ; sequence Lalb_14625 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304414 304869 . + . KQ414889.1 exonerate:protein2genome:local exon 304414 304869 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 304414 304869 280 + . alignment_id 13 ; Query Lalb_14625 ; Align 304414 100 156 ; Align 304573 152 51 ; Align 304627 169 171 ; Align 304798 227 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 274 Query range: 2 -> 250 Target range: 256649 -> 257405 3 : AsnTyrThrLeuGluMetCysArgTrpLeuLeuLysIleLeuGlyValTrpThrLeuV : 22 :!!|||!:!|||:!!:!! !||||||!!!|||||| !:!!|||!.!||| !! AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpPro---P 256650 : GATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCA---C : 256704 23 : alTyrHisArgIleSerLysSerAspArgAlaLeuCysThrAlaThrLeuAlaThrCy : 41 !! !! !!!!! !!!:||| !:!!! ! !!.! ! ! !..!|| roSerSerSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCy 256705 : CCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTG : 256761 42 : sIleGlyIleLeuSerPheThrIleLeuProSerLeuTyrSerValIlePheThrLys : 60 | !||| !:!!! !||||||:!::!!|||!!!||| ! !|||.!!.!! ! ! sTyrGlySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAsp 256762 : CTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGAC : 256818 61 : AsnSerThrAspThrIleIleLysLeuLeuGlyProValGlyLeuCysSerPheCysT : 80 :!!||| ! ! :::||| ...||||||:!!.!!! !!! ! !.!! !! AspSerPheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerC 256819 : GACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCT : 256878 81 : hrValLysTyrMetTyrLeuIleLeuLysGlyLysSerLeuGlyArgCysValGlnHi : 99 !!.!!!.|||! !! |||:!:|||:!!||||||..!:!! !! !||||||:!!|| ysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHi 256879 : GTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCA : 256935 100 : sLeuGluArgAspTrpGluMetValThrHisProGlyHisArgSerIleMetLeuLys : 118 |:!!|||! !||||||..!||||||! !... ! ! !!!:!..!:!:|||:!!||| sIleGluThrAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLys 256936 : TATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAG : 256992 119 : TyrSerSerIleSerArgLysLeuIleValLeuCysValValPheLeuTyrSerGlyG : 138 !!:!!!!!.!!.!!||| ! :!! !..!!!!|||!.!!.!.!!:!! ! |||||| AsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyV 256993 : AACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCg : 257052 139 : lyLeuSerTyrHisThrValLysGlnLeuIleThrLysAspGluSerThrLeuAsnSe : 157 ... ::: ..! !..! !|||! !|||:!! !..! !|||.. alPheCysPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGl 257053 : ttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGA : 257109 158 : rThrGluArgProPheValTyrProCysPhe<-><-><->GluPheIleAsnProGln : 173 !||| !! ! ! ||| ||| ! ! :!!.!.:!:||| !.!. uThrThrIleValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAsp 257110 : AACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGAT : 257166 174 : AlaSerProAsnTyrGluIleIlePhePheValHisCysLeuSerGlyLeuIleGlnT : 193 !||||||!.. !!||||||:!: !!|||:!!!!. !! !|||..!:!!||| ! GlnSerProThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaT 257167 : CAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGA : 257226 194 : yrThrIleThrSerAlaMetTyrSerLeuAlaAlaIlePheValThrHisIleCysGl : 212 !|||! !||| !::!!!:!:!||||||||||||:!!|||!.!|||||| ! !|| hrThrSerThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGl 257227 : CTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGG : 257283 213 : yArgIleGluIleGlnIleSerArgLeuAspGluLeuIleGluGlySer<-><->Glu : 229 |!:!:!: :!:! !!:||| !!:!! |||!!!:!:.!.! !||| ... yGlnLeuThrValLeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArg 257284 : TCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGg : 257340 230 : GluLysProIlePheTyrAspArgLeuGlyIleIleIleGlnGluHisAlaGluValL : 249 |||||| ... ::! ! !:!:!!|||:!:|||:!::!!.!.||| !..!|||| GluLysThrPheProPheLysGlnIleGlyValIleValGluHisHisLeuArgValL 257341 : gagaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGC : 257400 250 : euArg : 250 ||||| euArg 257401 : TGAGG : 257405 vulgar: Lalb_14625 2 250 . KQ414889.1 256649 257405 + 274 M 18 54 G 1 0 M 146 438 G 0 9 M 61 183 G 0 6 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256650 257405 274 + . gene_id 14 ; sequence Lalb_14625 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256650 257405 . + . KQ414889.1 exonerate:protein2genome:local exon 256650 257405 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 256650 257405 274 + . alignment_id 14 ; Query Lalb_14625 ; Align 256650 3 54 ; Align 256704 22 438 ; Align 257151 168 183 ; Align 257340 229 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 268 Query range: 0 -> 250 Target range: 208203 -> 208962 1 : AspValAsnTyrThrLeuGluMetCysArgTrpLeuLeuLysIleLeuGlyValTrpT : 20 |||:!!!:!!:!!.!:!!...:!! ! !||| !|||||||||:!!||| !||| AspLeuSerPheAsnValArgLeuAsnValTrpThrLeuLysIleIleGlySerTrpP 208204 : GATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGAAGATAATCGGCTCCTGGC : 208261 21 : hrLeuValTyrHisArgIleSerLysSerAspArgAlaLeuCysThrAlaThrLeuAl : 39 !! ! ! !!||| ||| !! !!!:!.!::!! ! !! ! ! ! !!. roArgSerIleAspArg---SerTrpLeuGluAsnSerGlnHisIleLeuLeuAsnVa 208262 : CGAGATCTATAGATCGT---TCCTGGTTAGAGAACAGCCAGCATATTCTCTTAAACGT : 208315 40 : aThrCysIleGlyIleLeuSerPheThrIleLeuProSerLeuTyrSerValIlePhe : 58 ! ! !! ! !!:!:|||.!!|||! !:!::!!|||!!! ! ! !!.!|||.!! lLeuSerHisCysLeuLeuGlyPheIleValIleProThrGlyMetPheAlaIleLeu 208316 : ACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATGTTCGCGATCCTC : 208372 59 : ThrLysAsnSerThrAspThrIleIleLysLeuLeuGlyProValGlyLeuCysSerP : 78 ..! .!...! ! !! ! !:!!|||:!!! !.!! !!:!!.!!!!!! !! !. ValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaLeuSerPhePheMetM 208373 : GTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGA : 208432 79 : heCysThrValLysTyrMetTyrLeuIleLeuLysGlyLysSerLeuGlyArgCysVa : 97 !.... !..!||||||:!! !:!!! !:!!:::! ! ..!:!! !!!:!||||| etAlaPheThrLysTyrValIleMetThrValArgGluGlyAspIleArgLysCysVa 208433 : TGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGACATACGGAAGTGTGT : 208489 98 : lGlnHisLeuGluArgAspTrpGluMetValThrHisProGlyHisArgSerIleMet : 116 |:!!:!!:!!||| !||||||..!! ||| !||| !! ! !!|||!.!|||||| lGluTyrValGluAlaAspTrpArgAsnValGluHisGluGluAspArgLysIleMet 208490 : CGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAGGACAGGAAGATCATG : 208546 117 : LeuLysTyrSerSerIleSerArgLysLeuIleValLeuCysValValPheLeuTyrS : 136 ||| ! !!:!!|||.!!:!!|||||||||||||||:!!|||! !!.!|||:!!|||. LeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysGlyAlaPheMetTyrG 208547 : TTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCGGAGCTTTCATGTACG : 208606 137 : erGlyGlyLeuSerTyrHisThrValLysGlnLeuIleThrLysAsp<-><->GluSe : 153 !!||| ::: |||::: !!.! !! !|||! ! ! ! ! |||.. lyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAspLysValValGluGl 208607 : GAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGACAAGGTCGTCGAGGA : 208663 154 : rThrLeuAsnSerThrGluArgProPheValTyrProCysPheGluPheIle<->Asn : 171 ! ! !|||! !||| ! ||| !.!.||||||||| ! !:!!|||||| :!! uGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValProLysPheIleLeuAsp 208664 : GGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCTAAGTTCATTCTGGAC : 208720 172 : ProGlnAlaSerProAsnTyrGluIleIlePhePheValHisCysLeuSerGlyLeuI : 191 !!:! !|||||| !!||||||.!!!:! |||!!.! |||||||||!!!: ValArgTyrSerProValAsnGluIlePheTyrThrValGlnLeuLeuSerGlyPheV 208721 : GTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAATTGTTGTCGGGTTTCG : 208780 192 : leGlnTyrThrIleThrSerAlaMetTyrSerLeuAlaAlaIlePheValThrHisIl : 210 !! :!!!.!|||||| !!.! ! !.!!|||||||||:!:.!!!.!! !||| alAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAl 208781 : TTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCACGC : 208837 211 : eCysGlyArgIleGluIleGlnIleSerArgLeuAspGluLeuIleGluGlySerGlu : 229 ||||||!:!:!::!!||| !!!:||| !!:!!!!::!!|||:!!!!:||| !!||| aCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeuValAspGlyArgGlu 208838 : GTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTGGTCGATGGACGGGAG : 208894 230 : GluLysProIlePheTyrAsp<->ArgLeuGlyIleIleIleGlnGluHisAlaGluV : 248 !!::!! !! !! ||| ||||||!.!! !|||:!::!!:!!|||!.!..!| AspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleValGluGlnHisValArgV 208895 : GACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCGTGGAGCAGCATGTTCGAG : 208954 249 : alLeuArg : 250 ||:!!!:! alIleLys 208955 : TGATCAAG : 208962 vulgar: Lalb_14625 0 250 . KQ414889.1 208203 208962 + 268 M 25 75 G 1 0 M 125 375 G 0 6 M 19 57 G 0 3 M 66 198 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208204 208962 268 + . gene_id 15 ; sequence Lalb_14625 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208204 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208204 208962 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208204 208962 268 + . alignment_id 15 ; Query Lalb_14625 ; Align 208204 1 75 ; Align 208279 27 375 ; Align 208660 152 57 ; Align 208720 171 198 ; Align 208921 237 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 254 Query range: 283 -> 374 Target range: 286878 -> 287225 284 : GluTrpArgArgSerAspAlaIleAlaLeuLeuThrTyrPheThrLeuLeuValSerP : 303 ||||||..!!:!|||!!:.!!|||!.! !:!!||||||! !|||||||||||||||| GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerP 286879 : GAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTT : 286936 304 : heThrPheAsnIleMetIlePheCysTyrValGlyGluLeuLeuSerGluGln >>> : 321 |||||||||||:!!.!.|||.!!||||||:!!||||||:!!|||||||||||| heThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286937 : TCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt... : 286992 322 : > Target Intron 1 >>>> CysSerArgMetGlyProAlaSerTyrAspIleG : 332 74 bp |||! !!:!:!:||| !:!!!!!||| |||. ++CysLeuLysValGlyLeuSerThrTyrMetIleA 286993 : ......................agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCG : 287097 333 : lnTrpTyrAsnLeuProProArgArgAlaTyrAsnLeuIleLeuLeuSerAlaIleSe : 351 !.||||||..!|||||| !!:!! !||| ! ..!|||||||||:!!! !|||:!:|| spTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSe 287098 : ACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTC : 287154 352 : rLeuGluProProLysLeuThrAlaGlyAsnIleIleAspLeuSerIleAsnThrPhe : 370 | !... !! !|||||||||||||||!!.|||||||||||||||:!!!:!!:!||| rAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPhe 287155 : GAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTC : 287211 371 : GlyAlaValSer : 374 !!::!|||||| CysSerValSer 287212 : TGCAGCGTGAGT : 287225 vulgar: Lalb_14625 283 374 . KQ414889.1 286878 287225 + 254 M 37 111 5 0 2 I 0 70 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286879 287225 254 + . gene_id 16 ; sequence Lalb_14625 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287225 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287225 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286879 287225 254 + . alignment_id 16 ; Query Lalb_14625 ; Align 286879 284 111 ; Align 287064 321 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 249 Query range: 283 -> 374 Target range: 280091 -> 280438 284 : GluTrpArgArgSerAspAlaIleAlaLeuLeuThrTyrPheThrLeuLeuValSerP : 303 ||||||..!!:!!:!|||||||||!.! !!!!||||||!!.! !!!!|||:!!|||! GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerL 280092 : GAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTT : 280149 304 : heThrPheAsnIleMetIlePheCysTyrValGlyGluLeuLeuSerGluGln >>> : 321 !.|||||||||:!!.!.|||.!!||||||:!!||||||:!!|||||||||||| euThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 280150 : TAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt... : 280205 322 : > Target Intron 1 >>>> CysSerArgMetGlyProAlaSerTyrAspIleG : 332 74 bp |||! !!:!:!:||| !:!!!!!||| |||. ++CysLeuLysValGlyValSerThrTyrMetIleA 280206 : ......................agTGCTTAAAAGTCGGCGTGTCAACTTACATGATCG : 280310 333 : lnTrpTyrAsnLeuProProArgArgAlaTyrAsnLeuIleLeuLeuSerAlaIleSe : 351 !.||||||..!|||||| !!:!!:!||| ! ..!|||||||||:!!! !|||:!:|| spTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaValSe 280311 : ACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCGTGTC : 280367 352 : rLeuGluProProLysLeuThrAlaGlyAsnIleIleAspLeuSerIleAsnThrPhe : 370 | !... !! !|||||||||||||||!!.|||||||||||||||:!!!:!!:!||| rAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPhe 280368 : GAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTC : 280424 371 : GlyAlaValSer : 374 !!::!|||||| CysSerValSer 280425 : TGCAGCGTGAGT : 280438 vulgar: Lalb_14625 283 374 . KQ414889.1 280091 280438 + 249 M 37 111 5 0 2 I 0 70 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280092 280438 249 + . gene_id 17 ; sequence Lalb_14625 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280438 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280092 280438 249 + . alignment_id 17 ; Query Lalb_14625 ; Align 280092 284 111 ; Align 280277 321 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 249 Query range: 0 -> 103 Target range: 299680 -> 299989 1 : AspValAsnTyrThrLeuGluMetCysArgTrpLeuLeuLysIleLeuGlyValTrpT : 20 |||:!!:!!|||||||||:!!||||||!:!|||||||||||| !:!!||||||||| AspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpA 299681 : GACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGC : 299738 21 : hrLeuValTyrHisArgIleSerLysSerAspArgAlaLeuCysThrAlaThrLeuAl : 39 !|||:!! !!!!.||| !|||||| !!!:!.! !:!!! ! !!.! !:!!.! rgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMetTh 299739 : GATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATGAC : 299795 40 : aThrCysIleGlyIleLeuSerPheThrIleLeuProSerLeuTyrSerValIlePhe : 58 !! !|||.!!..!! !|||! !|||! !:!!||||||||| !:!!! !:!!.!!||| rIleCysPheSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePhePhe 299796 : AATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCTTC : 299852 59 : ThrLysAsnSerThrAspThrIleIleLysLeuLeuGlyProValGlyLeuCysSerP : 78 .!!:!!!!.|||! ! !!..!! :!:|||:!!!!!||||||||||||!!!||| !! AlaGluLysSerIleHisValLysValLysValPheGlyProValGlyPheCysLeuS 299853 : GCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCT : 299912 79 : heCysThrValLysTyrMetTyrLeuIleLeuLysGlyLysSerLeuGlyArgCysVa : 97 !! !! !||||||||| |||||| !|||!!.||| :!!!!!! !||||||:! erSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCysIl 299913 : CCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGCAT : 299969 98 : lGlnHisLeuGluArgAsp : 103 !||||||:!!||||||||| eGlnHisValGluArgAsp 299970 : CCAACACGTCGAGAGAGAC : 299989 vulgar: Lalb_14625 0 103 . KQ414889.1 299680 299989 + 249 M 103 309 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299681 299989 249 + . gene_id 18 ; sequence Lalb_14625 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299681 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299681 299989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299681 299989 249 + . alignment_id 18 ; Query Lalb_14625 ; Align 299681 1 309 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 237 Query range: 283 -> 383 Target range: 224323 -> 224688 284 : GluTrpArgArgSerAspAlaIleAlaLeuLeuThrTyrPheThrLeuLeuValSerP : 303 |||||| ||| !! !! !::! !:!!|||||||||! !||||||:!!|||. GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 304 : heThrPheAsnIleMetIlePheCysTyrValGlyGluLeuLeuSerGluGln >>> : 321 ..||||||||||||...||||||||||||::!|||||||||:!!:!!|||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln++ 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggt... : 224437 322 : > Target Intron 1 >>>> CysSerArgMetGlyProAlaSerTyrAspIleG : 332 65 bp |||...::::::||| !!.!|||||| |||. ++CysGluLysIleGlyGlnValSerTyrMetIleA 224438 : ......................agtgtgaaaaaattggacaAGTGTCGTACATGATCG : 224533 333 : lnTrpTyrAsnLeuProProArgArgAlaTyrAsnLeuIleLeuLeuSerAlaIleSe : 351 !.||||||...||| !! !!.!!:! ! !! !||||||:!!! !|||!!:|| spTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 224534 : ACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGATGTC : 224590 352 : rLeuGluProProLysLeuThrAlaGlyAsnIleIleAspLeuSerIleAsnThrPhe : 370 | !... !! !||||||||||||||||||!!::!!!!:|||!!!:!!!.!|||||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThrPhe 224591 : CAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACTTTC : 224647 371 : GlyAlaValSerAspPheIleMetThrAsnValPheArg : 383 |||! !|||||| ! |||! ..!!.!:!! !!!:! GlyAspValSerIleThrIleThrValThrIleValLys 224648 : GGTGACGTAAGTATCACAATCACCGTCACTATAGTCAAA : 224688 vulgar: Lalb_14625 283 383 . KQ414889.1 224323 224688 + 237 M 37 111 5 0 2 I 0 61 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224688 237 + . gene_id 19 ; sequence Lalb_14625 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224688 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224688 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224688 237 + . alignment_id 19 ; Query Lalb_14625 ; Align 224324 284 111 ; Align 224500 321 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 236 Query range: 0 -> 229 Target range: 204227 -> 204914 1 : AspValAsnTyrThrLeuGluMetCysArgTrpLeuLeuLysIleLeuGlyValTrpT : 20 |||:!!!..|||.!! !....!. !:! !:!!||| !|||:!!|||!.!||| AspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaTrpP 204228 : GACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGTGGC : 204285 21 : hrLeuValTyrHisArgIleSerLysSerAspArgAlaLeuCysThrAlaThrLeuAl : 39 !!:!! ! :!! ! ||| !! ! ||| !:!! ! ! ! !! !!. roIleProValAsnSer---SerProPheThrArgLeuValArgArgIleGluHisVa 204286 : CGATTCCAGTGAACTCC---TCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGT : 204339 40 : aThrCysIleGlyIleLeuSerPheThrIleLeuProSerLeuTyrSerValIlePhe : 58 !..! ! :::... ... !|||:!!|||.!!|||! ! !|||.!!.!. lValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheLeu 204340 : AGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTG : 204396 59 : ThrLysAsnSerThrAspThrIleIleLysLeuLeuGlyProValGlyLeuCysSerP : 78 ! !:!!!!.!:! ! ! ! ! !:!:|||:!!|||||||||:!!! ! !||||||. LysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSerI 204397 : AAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCA : 204456 79 : heCysThrValLysTyrMetTyrLeuIleLeuLysGlyLysSerLeuGlyArgCysVa : 97 !. ! !!|||||| !:!!:!!! !::! ! ! !.!:!! !!:! !!:! leGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSerLe 204457 : TACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGTTT : 204513 98 : lGlnHisLeuGluArgAspTrpGluMetValThrHisProGlyHisArgSerIleMet : 116 !.!. !:!!..!||||||||| ! !!.!||| !! ! :!!|||! !|||.!. uAsnThrIleArgArgAspTrpIleGluAlaThrAspGlu---AsnArgLeuIlePhe 204514 : GAACACCATCAGACGCGACTGGATAGAGGCTACGGATGAA---AATCGGTTGATTTTC : 204567 117 : LeuLysTyrSerSerIleSerArgLysLeuIleValLeuCysValValPheLeuTyrS : 136 ! !..! ! :!!!.!|||.!!|||!:!:!!:!::!!:!!...!.!!.! !:!!|||. ArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetTyrG 204568 : CGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGTACG : 204627 137 : erGlyGlyLeuSerTyrHisThrValLysGlnLeuIleThrLysAspGluSerThrLe : 155 !!|||||||||!!!|||...|||:!! ! |||:!:! ! ! !|||! lyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleValThrPr 204628 : GCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTAACACC : 204684 156 : u<->AsnSerThrGluArgProPheValTyrProCys<->PheGluPheIleAsnPro : 172 ! ||| !||| !||||||!!. !! !||| ! ||| |||...||| ! oAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePheAsnGlu 204685 : TGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaacGAG : 204741 173 : GlnAlaSerProAsnTyrGluIleIlePhePheValHisCysLeuSerGlyLeuIleG : 192 ||| !||||||||||||||||||:!!|||.!.:!!!!. !:!!:!!|||!!!:!! GlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheValT 204742 : CAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTGTTA : 204801 193 : lnTyrThrIleThrSerAlaMetTyrSerLeuAlaAlaIlePheValThrHisIleCy : 211 |||.!!:!!! !|||!.!! ! !.!!:!!..!|||:!:|||||| !||| || hrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAlaCy 204802 : CTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGCGTG : 204858 212 : sGlyArgIleGluIleGlnIleSerArgLeuAspGluLeuIleGluGlySerGlu : 229 |.!!! !:!:..!||| !:!:!:!!:!:!!:!!! !|||:!:!!: !:!!!!: sSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAlaAsp 204859 : CAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCGGAC : 204914 vulgar: Lalb_14625 0 229 . KQ414889.1 204227 204914 + 236 M 25 75 G 1 0 M 84 252 G 1 0 M 44 132 G 0 3 M 11 33 G 0 3 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204228 204914 236 + . gene_id 20 ; sequence Lalb_14625 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204228 204914 . + . KQ414889.1 exonerate:protein2genome:local exon 204228 204914 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 204228 204914 236 + . alignment_id 20 ; Query Lalb_14625 ; Align 204228 1 75 ; Align 204303 27 252 ; Align 204555 112 132 ; Align 204690 156 33 ; Align 204726 167 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 218 Query range: 279 -> 374 Target range: 210651 -> 211935 280 : TyrCysMetIleGluTrpArgArgSerAspAlaIleAlaLeuLeuThrTyrPheThrL : 299 !:! !:!: |||||| ! !!.!||| !!|||::! !|||||||||.!...!| PheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValL 210652 : TTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTAC : 210709 300 : euLeuValSerPheThrPheAsnIleMetIlePheCysTyrValGlyGluLeuLeuSe : 318 |||||..!||| !!||||||||||||.!.||||||||||||:!!||||||:!!|||:! euLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAl 210710 : TCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGC : 210766 319 : rGluGln >>>> Target Intron 1 >>>> CysSerArgMetGlyProAlaS : 328 !|||||| 999 bp !!:!:!:||| ! !| aGluGln++ ++ThrValLysValGlyGluLysS 210767 : TGAACAggt.........................agACAGTAAAAGTTGGAGAAAAGT : 211795 329 : erTyrAspIleGlnTrpTyrAsnLeuProProArgArgAlaTyrAsnLeuIleLeuLe : 347 ||||| |||.!.||||||...:!!||| !!:!!:!!.!! !:!! !|||:! erTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValValProLeuMe 211796 : CTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGAT : 211852 348 : uSerAlaIleSerLeuGluProProLysLeuThrAlaGlyAsnIleIleAspLeuSer : 366 !! !:!!!!:|||! !..! !! !!|||:!!||||||||||||:!!|||! !|||||| tIleSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleValLeuSer 211853 : GATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTTCTTTCA : 211909 367 : IleAsnThrPheGlyAlaValSer : 374 |||!:!!:!||||||! !|||||| IleSerSerPheGlyAspValSer 211910 : ATCAGTAGTTTCGGTGACGTAAGt : 211935 vulgar: Lalb_14625 279 374 . KQ414889.1 210651 211935 + 218 M 41 123 5 0 2 I 0 995 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210652 211935 218 + . gene_id 21 ; sequence Lalb_14625 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 210652 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210652 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211935 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211935 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210652 211935 218 + . alignment_id 21 ; Query Lalb_14625 ; Align 210652 280 123 ; Align 211774 321 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 215 Query range: 283 -> 382 Target range: 219328 -> 219698 284 : GluTrpArgArgSerAspAlaIleAlaLeuLeuThrTyrPheThrLeuLeuValSerP : 303 ||||||!:! !!:!|||!.!! ::! !:!!||||||.!!! !||||||:!!|||. GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 304 : heThrPheAsnIleMetIlePheCysTyrValGlyGluLeuLeuSerGluGln >>> : 321 !.||||||||||||...||||||||||||:!!||||||:!!:!!:!!|||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln++ 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAggt... : 219442 322 : > Target Intron 1 >>>> CysSerArgMetGlyProAlaSerTyrAspIleG : 332 73 bp ||| ::::::||| |||||| |||: ++CysArgLysIleGlyGluMetSerTyrMetIleG 219443 : ......................agTGtaggaaaattggagaaatgtCGTACATGATCG : 219546 333 : lnTrpTyrAsnLeuProProArgArgAlaTyrAsnLeuIleLeuLeuSerAlaIleSe : 351 !!||||||...||| !! !!:!!:! ! ! !:!!||| !! !|||!!:|| luTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaMetSe 219547 : AATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTATGTC : 219603 352 : rLeuGluProProLysLeuThrAlaGlyAsnIleIleAspLeuSerIleAsnThrPhe : 370 | !... !! !||||||||||||||||||!!::!!!!:|||||||||!:!|||||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPhe 219604 : GAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCACTTTT : 219660 371 : GlyAlaValSerAspPheIleMetThrAsnValPhe : 382 !! !|||||| :::... :::..!||| ThrAspValSerIleLysLeuPheLysSerThrPhe 219661 : ACCGACGTGAGtatcaaattattcaaatctaCATTT : 219698 vulgar: Lalb_14625 283 382 . KQ414889.1 219328 219698 + 215 M 37 111 5 0 2 I 0 69 3 0 2 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219698 215 + . gene_id 22 ; sequence Lalb_14625 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219698 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219698 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219698 215 + . alignment_id 22 ; Query Lalb_14625 ; Align 219329 284 111 ; Align 219513 321 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 207 Query range: 276 -> 381 Target range: 305079 -> 305807 277 : LeuGluPheTyrCysMetIleGluTrpArgArgSerAspAlaIleAlaLeuLeuThrT : 296 ||| ...||| !!:|||..!!!!|||:!!.!!:!!::!||| !|||| LeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrThrT 305080 : TTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACAT : 305137 297 : yrPheThrLeuLeuValSerPheThrPheAsnIleMetIlePheCysTyrValGlyGl : 315 || ..!||||||:!!||| ! ||||||||||||.!.|||!!.||||||:!!||||| yrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGl 305138 : ATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGA : 305194 316 : uLeuLeuSerGluGlnCys{Se} >>>> Target Intron 1 >>>> {r}Arg : 323 |:!!|||! !|||:!! {||} 413 bp {|}!!! uIleLeuMetGluLysVal{Se}-+ ++{r}Ser 305195 : GATTCTTATGGAAAAGGTG{ag}tt.........................ag{T}AGC : 305631 324 : MetGlyProAlaSerTyrAspIleGlnTrpTyrAsnLeuProProArgArgAlaTyrA : 343 :!:||| !:!!!!!!:! |||...||||||:!!|||||| !!!:!! ! !:!!. ValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisG 305632 : GTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATG : 305691 344 : snLeuIleLeuLeuSerAlaIleSerLeuGluProProLysLeuThrAlaGlyAsnIl : 362 .!|||||||||:!!! !|||!!:||| !.!.||| !!|||:!!!:!||||||!!.:! lyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysVa 305692 : GTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGT : 305748 363 : eIleAspLeuSerIleAsnThrPheGlyAlaValSerAspPheIleMetThrAsnVal : 381 !:!!|||||||||:!!::!||||||||| !|||||| !!!:! :::|||::: lValAspLeuSerLeuSerThrPheGlyAsnValSerTyrTyrGlnTyrSerAsnIle 305749 : AGTTGATTTATCTTTATCCACATTTGGAAACGTGAGTTACTATcaatattccaatatt : 305805 vulgar: Lalb_14625 276 381 . KQ414889.1 305079 305807 + 207 M 45 135 S 0 2 5 0 2 I 0 409 3 0 2 S 1 1 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305080 305807 207 + . gene_id 23 ; sequence Lalb_14625 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305080 305216 . + . KQ414889.1 exonerate:protein2genome:local exon 305080 305216 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305217 305218 . + . intron_id 1 ; splice_site "tt" KQ414889.1 exonerate:protein2genome:local intron 305217 305629 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305628 305629 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305630 305807 . + . KQ414889.1 exonerate:protein2genome:local exon 305630 305807 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305080 305807 207 + . alignment_id 23 ; Query Lalb_14625 ; Align 305080 277 135 ; Align 305631 323 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 272 -> 374 Target range: 214596 -> 215025 273 : IleMetCysValLeuGluPheTyrCysMetIleGluTrpArgArgSerAspAlaIleA : 292 ||| :::::::::||| ::: ||||||!.! !!:!:!! !! !. IleSerAsnIleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrT 214597 : atatcaaacatcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAA : 214654 293 : laLeuLeuThrTyrPheThrLeuLeuValSerPheThrPheAsnIleMetIlePheCy : 311 !! !:!!|||||| ! ..!|||! !:!!|||...||||||||||||...|||||||| hrThrValThrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCy 214655 : CTACAGTAACTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttg : 214711 312 : sTyrValGlyGluLeu{Le} >>>> Target Intron 1 >>>> {u}SerGlu : 319 ||||:!!|||||||||{:!} 123 bp {!}! !:!! sTyrIleGlyGluLeu{Va}++ +-{l}LeuGln 214712 : ttaCATAGGCGAGCTT{GT}gt.........................at{G}TTACAA : 214858 320 : GlnCysSerArgMetGlyProAlaSerTyrAspIleGlnTrpTyrAsnLeuProProA : 339 ||||||!.!!:!:!:||| !!.!|||||| |||:!!||||||...|||||| !! GlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrArgLeuProGlyA 214859 : CAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACCGATTGCCAGGTA : 214918 340 : rgArgAlaTyrAsnLeuIleLeuLeuSerAlaIleSerLeuGluProProLysLeuTh : 358 .!!:! ! ! !! !||||||:!!! !|||!!:||| !..! !! !|||!!!|| snLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSerValLysPheTh 214919 : ACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATCCGTCAAATTCAC : 214975 359 : rAlaGlyAsnIleIleAspLeuSerIleAsnThrPheGlyAlaValSer : 374 ||||||||||!!::!!!!:|||||||||!:!||||||.!!::!|||||| rAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerValSer 214976 : AGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTAAGT : 215025 vulgar: Lalb_14625 272 374 . KQ414889.1 214596 215025 + 205 M 44 132 S 0 2 5 0 2 I 0 119 3 0 2 S 1 1 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214597 215025 205 + . gene_id 24 ; sequence Lalb_14625 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214597 214730 . + . KQ414889.1 exonerate:protein2genome:local exon 214597 214730 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214731 214732 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214731 214853 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214852 214853 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 214854 215025 . + . KQ414889.1 exonerate:protein2genome:local exon 214854 215025 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214597 215025 205 + . alignment_id 24 ; Query Lalb_14625 ; Align 214597 273 132 ; Align 214855 318 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 203 Query range: 2 -> 250 Target range: 236849 -> 237599 3 : AsnTyrThrLeuGluMetCysArgTrpLeuLeuLysIleLeuGlyValTrpThrLeuV : 22 :!!|||!:!|||:!! ! !|||||| !:!!|||! !:!!|||..!||| !! AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpPro---- 236850 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCA---- : 236904 23 : alTyrHisArgIleSerLysSerAspArgAlaLeuCysThrAlaThrLeuAlaThrCy : 41 !!. ! |||!!. !!!:||| !:!!! ! ! ! ! !!.!! !|| -----GlnPheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCy 236905 : -----CAGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTG : 236955 42 : sIleGlyIleLeuSerPheThrIleLeuProSerLeuTyrSerValIlePheThrLys : 60 | ! ! !:!! !|||:!!|||:!!|||!!!! !! !:!!!!:.!. !||| sTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLys 236956 : CTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAA : 237012 61 : AsnSerThrAspThrIleIleLysLeuLeuGlyProValGlyLeuCysSerPheCysT : 80 ...!!! ! !!|||! !:!:|||:!!|||||| !!:!!.!!! !!! !||||||! GlyThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysI 237013 : GGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTA : 237072 81 : hrValLysTyrMetTyrLeuIleLeuLysGlyLysSerLeuGlyArgCysValGlnHi : 99 !:!!!..|||! |||:!:|||::! !!|||!!!:!! !!!.!! ! !!.!.|| leIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHi 237073 : TCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCA : 237129 100 : sLeuGluArgAspTrpGluMetValThrHisProGlyHisArgSerIleMetLeuLys : 118 |:!!|||! !||||||..!! !..!|||... :::...:::||||||||| sMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLys 237130 : TATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAG : 237186 119 : TyrSerSerIleSerArgLysLeuIleValLeuCysValValPheLeuTyrSerGlyG : 138 |||:!!!.!.!!|||||| ! ! :!!! !|||..!:!!|||:!!:!!.!!||| TyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyI 237187 : TACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTA : 237246 139 : lyLeuSerTyrHisThrValLysGlnLeuIleThrLysAspGluSerThrLeuAsnSe : 157 !|||.!!||| !..!:!!! ! !! !! !|||! !! !! !..! !|||!. leLeuGlyTyrCysValMetThrAlaSerThrThrMetValValValValGlyAsnLy 237247 : TACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAA : 237303 158 : rThrGlu<-><->ArgProPheValTyrProCysPheGluPheIleAsnPro<->Gln : 173 !||| ! ||| !.!. !! ||| !:!:!! :!! !||| .!. sThrThrIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAsp 237304 : GACTACGATCTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGAT : 237360 174 : AlaSerProAsnTyrGluIleIlePhePheValHisCysLeuSerGlyLeuIleGlnT : 193 .!!!:! !!! !!!!:|||:!! !!!!. !!!.! !|||||||||!!!||| ! ThrAsnThrMetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaA 237361 : ACGAATACTATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGA : 237420 194 : yrThrIleThrSerAlaMetTyrSerLeuAlaAlaIlePheValThrHisIleCysGl : 212 !!!.!! !.!!! !::!:!: ||||||.!!::! !.!...!:!!||| ! !|| snAsnSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGl 237421 : ACAACAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGG : 237477 213 : yArgIleGluIleGlnIleSerArgLeuAspGluLeuIleGluGlySerGluGlu<-> : 231 |!:!:!:...:!: !!:! ! !:!!!!:!!:!!!:!:...! !:!!..!... yGlnLeuSerValValMetLeuSerIleGluAspPheValSerGluAlaArgArgArg 237478 : CCAGTTGAGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGA : 237534 232 : <->LysProIlePheTyrAspArgLeuGlyIleIleIleGlnGluHisAlaGluValL : 249 ||| ! ! !!:!|||..!:!! !! !|||:!::!!|||||| !..!|||| GlyLysAspAspHisPheAspGluIleProThrIleValGluGluHisLeuArgValL 237535 : GGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGT : 237594 250 : euArg : 250 ||!:! euLys 237595 : TGAAG : 237599 vulgar: Lalb_14625 2 250 . KQ414889.1 236849 237599 + 203 M 18 54 G 3 0 M 136 408 G 0 6 M 13 39 G 0 3 M 58 174 G 0 6 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236850 237599 203 + . gene_id 25 ; sequence Lalb_14625 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236850 237599 . + . KQ414889.1 exonerate:protein2genome:local exon 236850 237599 . + . insertions 15 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 236850 237599 203 + . alignment_id 25 ; Query Lalb_14625 ; Align 236850 3 54 ; Align 236904 24 408 ; Align 237318 160 39 ; Align 237360 173 174 ; Align 237540 231 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 169 Query range: 316 -> 373 Target range: 297632 -> 297803 317 : LeuSerGluGlnCysSerArgMetGlyProAlaSerTyrAspIleGlnTrpTyrAsnL : 336 :!!||| |||..!..!!:!.!.||| !|||:!!|||:!!|||:!!|||||||||| ValSerCysGlnAlaGluLysPheGlyAsnAlaAlaTyrAsnIleGluTrpTyrAsnL 297633 : GTTTCTTGTCAGGCTGAAAAATTCGGCAATGCAGCTTATAACATCGAATGGTACAACT : 297690 337 : euProProArgArgAlaTyrAsnLeuIleLeuLeuSerAlaIleSerLeuGluProPr : 355 ||||||||!.!|||||| !:!!|||:!:|||:!!! !!.!|||:!! ! ||||| euProProAsnArgAlaLeuAspLeuValLeuMetIleGlyIleAlaLysPheProPr 297691 : TACCGCCAAACAGGGCTCTCGATCTGGTGTTAATGATCGGTATAGCAAAATTTCCACC : 297747 356 : oLysLeuThrAlaGlyAsnIleIleAspLeuSerIleAsnThrPheGlyAlaVal : 373 |!:!||||||...|||...|||...|||:::|||||||||||||||.!!|||||| oArgLeuThrGlyGlyLysIlePheAspIleSerIleAsnThrPheSerAlaVal 297748 : GAGGCTCACAggtggaaaaatattcgatatatCGATAAACACGTTCAGTGCCGTA : 297803 vulgar: Lalb_14625 316 373 . KQ414889.1 297632 297803 + 169 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297633 297803 169 + . gene_id 26 ; sequence Lalb_14625 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297633 297803 . + . KQ414889.1 exonerate:protein2genome:local exon 297633 297803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297633 297803 169 + . alignment_id 26 ; Query Lalb_14625 ; Align 297633 317 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 283 -> 320 Target range: 301686 -> 301797 284 : GluTrpArgArgSerAspAlaIleAlaLeuLeuThrTyrPheThrLeuLeuValSerP : 303 ||||||!:!!.!||||||.!!||||||:!!||||||!:!||||||||||||..!|||| GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerP 301687 : GAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGT : 301744 304 : heThrPheAsnIleMetIlePheCysTyrValGlyGluLeuLeuSerGluGln : 320 ||||||||||||||.!.||||||||||||:!!||||||:!!|||||||||||| heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln 301745 : TCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAG : 301797 vulgar: Lalb_14625 283 320 . KQ414889.1 301686 301797 + 159 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301687 301797 159 + . gene_id 27 ; sequence Lalb_14625 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301687 301797 159 + . alignment_id 27 ; Query Lalb_14625 ; Align 301687 284 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 317 -> 374 Target range: 230238 -> 230409 318 : SerGluGlnCysSerArgMetGlyProAlaSerTyrAspIleGlnTrpTyrAsnLeuP : 337 ||| !||||||!!!!:!:!:||| ! !|||||| |||:!!||||||...||| SerLeuGlnCysArgLysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuT 230239 : tcCTTACAGTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAA : 230296 338 : roProArgArgAlaTyrAsnLeuIleLeuLeuSerAlaIleSerLeuGluProProLy : 356 !! !!.!!:! ! ! !! !||||||:!!! !|||!!:||| ! !! !!|| hrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLy 230297 : CCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAA : 230353 357 : sLeuThrAlaGlyAsnIleIleAspLeuSerIleAsnThrPheGlyAlaValSer : 374 |!!!||||||||||||!!::!!!!:||||||:!!|||||||||.!!! !|||||| sPheThrAlaGlyAsnMetValGluLeuSerValAsnThrPheSerAspValSer 230354 : ATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGACGTAAGT : 230409 vulgar: Lalb_14625 317 374 . KQ414889.1 230238 230409 + 124 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230239 230409 124 + . gene_id 28 ; sequence Lalb_14625 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230239 230409 . + . KQ414889.1 exonerate:protein2genome:local exon 230239 230409 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230239 230409 124 + . alignment_id 28 ; Query Lalb_14625 ; Align 230239 318 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 269 -> 324 Target range: 261691 -> 261856 270 : SerAlaValIleMetCysValLeuGluPheTyrCysMetIleGluTrpArgArgSerA : 289 !:!..!||||||!!:! ! ! |||::: ::: |||||| !..!..!| AsnCysValIleIlePhePhe***TyrPhePheLeuLeuGlnGluTrpAlaGluGlnA 261692 : AATTGTGTAATAATCTTTTTctgatatttctttcttttgcagGAATGGGCTGAGCAAG : 261749 290 : spAlaIleAlaLeuLeuThrTyrPheThrLeuLeuValSerPheThrPheAsnIleMe : 308 || ! ! !|||! !|||||||||! !:!!|||:!!:!!.!! !||||||:!!.! spIleGlnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPh 261750 : ATATACAAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATT : 261806 309 : tIlePheCysTyrValGlyGluLeuLeuSerGluGlnCysSerArgMet : 324 .|||.!!||||||:!!||||||:!!|||!!!|||||| ..!!.!:!! eIleIleCysTyrIleGlyGluIleLeuThrGluGlnValGlnHisLeu 261807 : TATAATCTGTTACATCGGTGAAATACTAACGGAACAGGTACAACATTTG : 261856 vulgar: Lalb_14625 269 324 . KQ414889.1 261691 261856 + 118 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261692 261856 118 + . gene_id 29 ; sequence Lalb_14625 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 261692 261856 . + . KQ414889.1 exonerate:protein2genome:local exon 261692 261856 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 261692 261856 118 + . alignment_id 29 ; Query Lalb_14625 ; Align 261692 270 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 278 -> 320 Target range: 258249 -> 258375 279 : PheTyrCysMetIleGluTrpArgArgSerAspAlaIleAlaLeuLeuThrTyrPheT : 298 |||||| ... |||||| !! !...||| ||| :::||||||! PheTyrTyrPheGlnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheM 258250 : ttttattattttcaggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTA : 258307 299 : hrLeuLeuValSerPheThrPheAsnIleMetIlePheCysTyrValGlyGluLeuLe : 317 !:!!|||:!!|||...:::|||||||||...:::...||||||:!!||||||:!!|| etIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLe 258308 : TGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATT : 258364 318 : uSerGluGln : 320 |!!!|||||| uThrGluGln 258365 : AACAGAACAG : 258375 vulgar: Lalb_14625 278 320 . KQ414889.1 258249 258375 + 117 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258250 258375 117 + . gene_id 30 ; sequence Lalb_14625 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 258250 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258250 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258250 258375 117 + . alignment_id 30 ; Query Lalb_14625 ; Align 258250 279 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 283 -> 320 Target range: 272836 -> 272947 284 : GluTrpArgArgSerAspAlaIleAlaLeuLeuThrTyrPheThrLeuLeuValSerP : 303 ||||||! ! ! !||| ! ::!||| !|||||||||! !:!!|||:!!|||. GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 304 : heThrPheAsnIleMetIlePheCysTyrValGlyGluLeuLeuSerGluGln : 320 !.||||||||||||...||| ||||||:!!||||||:!!|||!!!|||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGG : 272947 vulgar: Lalb_14625 283 320 . KQ414889.1 272836 272947 + 114 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 272947 114 + . gene_id 31 ; sequence Lalb_14625 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 272947 114 + . alignment_id 31 ; Query Lalb_14625 ; Align 272837 284 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 283 -> 319 Target range: 228247 -> 228355 284 : GluTrpArgArgSerAspAlaIleAlaLeuLeuThrTyrPheThrLeuLeuValSerP : 303 ||||||!.!! !!.!!!: !! ! ! !:!!||||||! .!!||||||:!!|||| GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerP 228248 : GAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCT : 228305 304 : heThrPheAsnIleMetIlePheCysTyrValGlyGluLeuLeuSerGlu : 319 ||||||||||||||...||||||||||||:!!||||||:!!:!!:!!||| heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGlu 228306 : TTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAA : 228355 vulgar: Lalb_14625 283 319 . KQ414889.1 228247 228355 + 111 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228248 228355 111 + . gene_id 32 ; sequence Lalb_14625 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 228248 228355 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228355 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228248 228355 111 + . alignment_id 32 ; Query Lalb_14625 ; Align 228248 284 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 283 -> 320 Target range: 277371 -> 277482 284 : GluTrpArgArgSerAspAlaIleAlaLeuLeuThrTyrPheThrLeuLeuValSerP : 303 |||||| ! !||||||!.! .!!:!! !|||:!!|||! !:!!|||:!!|||. GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 304 : heThrPheAsnIleMetIlePheCysTyrValGlyGluLeuLeuSerGluGln : 320 !. |||||||||... ! ! ||||||:!!||||||:!!|||!!!|||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAG : 277482 vulgar: Lalb_14625 283 320 . KQ414889.1 277371 277482 + 106 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277482 106 + . gene_id 33 ; sequence Lalb_14625 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277482 106 + . alignment_id 33 ; Query Lalb_14625 ; Align 277372 284 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 283 -> 320 Target range: 264537 -> 264648 284 : GluTrpArgArgSerAspAlaIleAlaLeuLeuThrTyrPheThrLeuLeuValSerP : 303 ||||||..!!!! ||| ||| !|||||||||! !:!!|||:!!|||. GluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerM 264538 : GAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATACTGATATCAA : 264595 304 : heThrPheAsnIleMetIlePheCysTyrValGlyGluLeuLeuSerGluGln : 320 !. ! !||||||.!.:!!.!.||||||:!!||||||:!!|||!!!|||||| etCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGln 264596 : TGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcag : 264648 vulgar: Lalb_14625 283 320 . KQ414889.1 264537 264648 + 102 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264538 264648 102 + . gene_id 34 ; sequence Lalb_14625 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264538 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264538 264648 102 + . alignment_id 34 ; Query Lalb_14625 ; Align 264538 284 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1284 Query range: 0 -> 379 Target range: 217156 -> 219671 1 : HisArgThrAsnValAsnLeuSerIleGlnTrpAsnArgTrpIleLeuArgProMetG : 20 :::... |||:::|||||||||||||||||||||||||||:!:|||!:!||||||| TyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetG 217157 : tacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGG : 217214 21 : lyValTrpProSerSerGlyThrAspSerGlyPheGluLysCysSerAsnArgLeuMe : 39 ||:!!||||||!:!||| !!||| !!!! !!! !..!||| ! ! !!!:!|||!! lyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIl 217215 : GTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGAT : 217271 40 : tAsnLeuValCysTyrSerLeuIleSerPheLeuPheValProCysTrpLeuPheMet : 58 :||| !:!!||||||.!!|||||||||||||||||||||||||||! :!!!:!:!! eAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyrVal 217272 : AAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTG : 217328 59 : MetLeuGluValGluAsnLeuTyrAspLysLeuLysLeuPheGlyProLeuSerPheC : 78 .!.||||||||||||:!!|||||||||||||||||||||||||||||||||! !|||| PheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheC 217329 : TTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCT : 217388 79 : ysValMetAlaTyrMetLysTyrTyrSerLeuMetThrHisAlaAsnAspIleArgGl : 97 |||||||||||!:!:!:|||||||||||||||!!:..!||| ! ||||||||||| ysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGl 217389 : GCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGA : 217445 98 : uCysIleLysTyrIleGluTrpAspTrpArgAsnValLysTyrSerLysAspArgGlu : 116 ||||:!:!:! |||||| !!|||||||||||||||!:!! !..!|||||||||||| uCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArgGlu 217446 : GTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAG : 217502 117 : IleMetValAlaAsnAlaLysPheGlyArgArgLeuValLysIleCysMetPhePheM : 136 |||:!!!.!||||||!!.|||||||||!:!|||||| !:!!|||! ||||||| AlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheM 217503 : GCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCA : 217562 137 : etTyrSerGlyPheValPheTyrTyrIleAlaLeuProIleArgValGlyArgIleTh : 155 ||||||||||||||||||||||||||||||||:!!||||||!!!|||||||||||| etTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIleLe 217563 : TGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCT : 217619 156 : rValGluGluGlnAsnValThrPheIleProMetValPheProMetThrLysPheMet : 174 ! !|||.!. !|||:!!||||||||||||:!!|||||||||.!.||||||!:!!!: uSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyrIle 217620 : ATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATC : 217676 175 : ProAspThrArgHisArgProLeuAsnGluIlePhePheSerIleGlnPhePheGlyG : 194 !|||||||||:!!! !||| !||||||||| ! |||! !:!!|||!!..!!!.!| IleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaG 217677 : ATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTG : 217736 195 : lyIleValIleHisGlyValAlaAlaAlaThrCysSerLeuValAlaAlaLeuAlaVa : 213 || !:!!!!:||||||:!!.!!:!!|||.!!|||||||||!.!||||||!!!||||| lyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaVa 217737 : GAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGT : 217793 214 : lHisAlaCysGlyGlnValLysIleLeuLeuArgTrpLeuGluHisLeuIleGluGly : 232 ||||||||||||||||:!!:!!:!:|||:!!!.!||||||:!!|||||||||!!:||| lHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGly 217794 : TCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGT : 217850 233 : ArgProAspMetSerLysSerValAspLysArgIleAlaGlyIleValSerGlnHisV : 252 ||| !!||||||||| ! !!!|||||| |||||||||.!!|||||||||||||||| ArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnHisV 217851 : AGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACG : 217910 253 : alArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheLeuSerIl : 260 |||||||||||{||} 1229 bp {|}||||||:!!:! alArgIleLeu{Ly}++ ++{s}PheLeuThrLe 217911 : TTCGGATATTA{AA}gt.........................ag{a}tttttgaCGCT : 219163 261 : eThrGluMetAlaMetArgGlnIleSerPheValGluPheThrGlyCysThrLeuAsn : 279 !||||||! .!!:!:!:!||||||||||||!.!|||||| !|||||||||:!!:!! uThrGluArgThrLeuGlnGlnIleSerPheAlaGluPheLeuGlyCysThrMetAsp 219164 : CACAGAGAGAACCCTCCAGCAAATCTCTTTCGCTGAATTTCTAGGATGCACCATGGAC : 219220 280 : LeuCysLeuLeuGlyTyrTyrAlaIleMet >>>> Target Intron 2 >>>> : 290 :!!||||||:!!||||||||| !|||:!! 76 bp IleCysLeuValGlyTyrTyrIleIleVal++ + 219221 : ATATGTCTCGTTGGATATTACATTATCGTGgt.........................a : 219327 291 : GluTrpAspProAsnAspLeuThrAlaThrValThrTyrIleThrIleLeuValSer : 308 |||||| ! !!||||||:!!|||::!.!!||||||||||||! !:!!|||:!!||| +GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSer 219328 : gGAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCC : 219383 309 : LeuGlyPheAsnIlePheIlePheCysTyrIleGlyAspLeuValAlaGluHis >> : 327 ||| ||||||||||||||||||||||||||||||!!::!!|||||||||!!. LeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln++ 219384 : CTcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAggt.. : 219442 328 : >> Target Intron 3 >>>> CysAsnArgValGlyGluValAlaTyrMetIle : 337 73 bp |||...::::::||||||::::!!||||||||| ++CysArgLysIleGlyGluMetSerTyrMetIle 219443 : .......................agTGtaggaaaattggagaaatgtCGTACATGATC : 219543 338 : AspTrpTyrGlnLeuTrpGlyAsnArgLysArgCysLeuIleLeuIleIleAlaMetS : 357 !!:||||||!:!||| |||!!.!:!|||! !!! !:!!|||! !|||||||||| GluTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaMetS 219544 : GAATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTATGT : 219603 358 : erAsnCysSerThrLysLeuThrAlaGlyLysMetValGluLeuSerLeuSerThrPh : 376 |||||! !|||! !|||||||||||||||!!.|||||||||||||||:!!|||||||| erAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPh 219604 : CGAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCACTTT : 219660 377 : eGlyAspVal : 379 | !|||||| eThrAspVal 219661 : TACCGACGTG : 219671 vulgar: Lalb_14632 0 379 . KQ414889.1 217156 219671 + 1284 M 255 765 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 37 111 5 0 2 I 0 69 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217157 219671 1284 + . gene_id 1 ; sequence Lalb_14632 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217157 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217157 217923 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217157 219671 1284 + . alignment_id 1 ; Query Lalb_14632 ; Align 217157 1 765 ; Align 219154 257 99 ; Align 219329 290 111 ; Align 219513 327 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1180 Query range: 0 -> 379 Target range: 212854 -> 215022 1 : HisArgThrAsnValAsnLeuSerIleGlnTrpAsnArgTrpIleLeuArgProMetG : 20 :!!..!! !...||||||||||||||| !||||||||||||:!!|||!:!|||! !| TyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrG 212855 : TACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGG : 212912 21 : lyValTrpProSerSerGlyThrAspSerGlyPheGluLysCysSerAsnArgLeuMe : 39 ||:!!||||||..!!.!..! !! !||| !.!!|||||| !! ! !||||||:! lyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIleAlaArgLeuVa 212913 : GTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGT : 212969 40 : tAsnLeuValCysTyrSerLeuIleSerPheLeuPheValProCysTrpLeuPheMet : 58 :||| !|||||||||.!!||||||.!!!:!||| ! :!!|||||| ! |||!:!:!! lAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrVal 212970 : CAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTG : 213026 59 : MetLeuGluValGluAsnLeuTyrAspLysLeuLysLeuPheGlyProLeuSerPheC : 78 .!.|||!!:|||||||||:::::: ::::!!:!!||||||||| !!!!:!!|||| PheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheC 213027 : TTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTT : 213086 79 : ysValMetAlaTyrMetLysTyrTyrSerLeuMetThrHisAlaAsnAspIleArgGl : 97 ||||| ||| !||||||:!!||||||!!: !|||!.!:!!||||||||| ysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgTh 213087 : GCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTAC : 213143 98 : uCysIleLysTyrIleGluTrpAspTrpArgAsnValLysTyrSerLysAspArgGlu : 116 !|||:!!:!!:!!!!::!!!::||||||!:!|||:!!! !:!!..!:!!|||!:!||| rCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGlu 213144 : GTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAA : 213200 117 : IleMetValAlaAsnAlaLysPheGlyArgArgLeuValLysIleCysMetPhePheM : 136 ||||||!.! !||||||!..||||||!:!|||:!!|||! !|||||| ||||||| IleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPhePheM 213201 : ATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCA : 213260 137 : etTyrSerGlyPheValPheTyrTyrIleAlaLeuProIleArgValGlyArgIleTh : 155 |||||!!!||||||..!||||||!:!:!!!.!:!!||||||!!!!.!! !!:!!!:.. etTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLysMetVa 213261 : TGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGT : 213317 156 : rValGluGluGlnAsnValThrPheIleProMetValPheProMetThrLysPheMet : 174 !!.!|||!!:! ||||||||||||! !! !|||||| !!|||:!::!!!:!|||!!: lAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSerArgPheIle 213318 : AGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATC : 213374 175 : ProAspThrArgHisArgProLeuAsnGluIlePhePheSerIleGlnPhePheGlyG : 194 !|||..!|||:!!!!!|||:!!|||||||||||||||! !||||||.!!.!.!.!| ValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleIleAlaG 213375 : GTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTG : 213434 195 : lyIleValIleHisGlyValAlaAlaAlaThrCysSerLeuValAlaAlaLeuAlaVa : 213 ||:!!:!!||||||!.!:!!|||!.!!.!.!!|||||||||!.!|||!.!!!!||||| lyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPheAlaVa 213435 : GAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGT : 213491 214 : lHisAlaCysGlyGlnValLysIleLeuLeuArgTrpLeuGluHisLeuIleGluGly : 232 ||||||||||||||||:!! ||||||:!!!!!||||||||||||||||||!!:||| lHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGly 213492 : TCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGT : 213548 233 : ArgProAspMetSerLysSerValAspLysArgIleAlaGlyIleValSerGlnHisV : 252 ||| !||||||||||||!:!|||||| ! |||||||||! !||||||!:!||||||| ArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleValAsnGlnHisV 213549 : AGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATG : 213608 253 : alArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheLeuSerIl : 260 |||||||||||{||} 840 bp {|}||||||..!:! alArgIleLeu{Ly}++ ++{s}PheLeuGluLe 213609 : TGCGGATACTG{AA}gt.........................ag{A}TTCTTAGAGCT : 214472 261 : eThrGluMetAlaMetArgGlnIleSerPheValGluPheThrGlyCysThrLeuAsn : 279 !..!|||! |||:!:||||||:!!||||||!.!|||!!. !! !||||||:!!||| uValGluLysAlaLeuArgGlnValSerPheAlaGluLeuLeuValCysThrValAsn 214473 : CGTGGAGAAAGCACTTCGGCAAGTATCTTTCGCTGAATTATTAGTATGCACGGTGAAT : 214529 280 : LeuCysLeuLeuGlyTyrTyrAlaIleMet >>>> Target Intron 2 >>>> : 290 |||||||||:!!||||||||| !|||! ! 68 bp LeuCysLeuValGlyTyrTyrIleIleThr++ + 214530 : CTCTGTCTCGTTGGATATTACATAATAACGgt.........................a : 214628 291 : GluTrpAspProAsnAspLeuThrAlaThrValThrTyrIleThrIleLeuValSer : 308 ||||||:!! !!|||:!!||||||.!!||||||||||||:!:..!:!:! !:!!||| +GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValValLeuTyrIleSer 214629 : ggAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGGTGTTGTATATCTCT : 214684 309 : LeuGlyPheAsnIlePheIlePheCysTyrIleGlyAspLeuValAlaGluHis >> : 327 ||| ||||||||||||||||||||||||||||||!!:||||||:!!|||!!. LeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValSerGluGln++ 214685 : CtcactttcaatattttcatattttgttaCATAGGCGAGCTTGTGTCTGAACAGgt.. : 214743 328 : >> Target Intron 3 >>>> CysAsnArgValGlyGluValAlaTyrMetIle : 337 123 bp |||!!.!:!||||||||||||:!!||||||||| ++CysLysLysValGlyGluValSerTyrMetIle 214744 : .......................agTGCAAAAAGGTCGGAGAAGTATCGTACATGATC : 214894 338 : AspTrpTyrGlnLeuTrpGlyAsnArgLysArgCysLeuIleLeuIleIleAlaMetS : 357 !!:||||||!:!||| ||||||!:!|||! !|||! !|||||||||!!:||||||| GluTrpTyrArgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetS 214895 : GAATGGTACCGATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGT : 214954 358 : erAsnCysSerThrLysLeuThrAlaGlyLysMetValGluLeuSerLeuSerThrPh : 376 |||||! |||..!|||!!!|||||||||!!.|||||||||||||||:!!|||||||| erAsnSerSerValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPh 214955 : CCAATTCATCCGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTT : 215011 377 : eGlyAspVal : 379 |.!!..!||| eSerSerVal 215012 : CAGCAGTGTA : 215022 vulgar: Lalb_14632 0 379 . KQ414889.1 212854 215022 + 1180 M 255 765 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 M 33 99 5 0 2 I 0 64 3 0 2 M 37 111 5 0 2 I 0 119 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212855 215022 1180 + . gene_id 2 ; sequence Lalb_14632 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212855 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 212855 213621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212855 215022 1180 + . alignment_id 2 ; Query Lalb_14632 ; Align 212855 1 765 ; Align 214463 257 99 ; Align 214630 290 111 ; Align 214864 327 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1158 Query range: 0 -> 379 Target range: 226912 -> 230406 1 : HisArgThrAsnValAsnLeuSerIleGlnTrpAsnArgTrpIleLeuArgProMetG : 20 :!!!:! ! !!:!!|||||||||||||||! !|||||||||:!:|||!:!|||:!:| TyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuG 226913 : TATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCG : 226970 21 : lyValTrpProSerSerGlyThrAspSerGlyPheGluLysCysSerAsnArgLeuMe : 39 ||:!!|||||||||||| !!! !..!||| !!.!.! !!:!|||! !::! !!||||| lyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMe 226971 : GTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGAT : 227027 40 : tAsnLeuValCysTyrSerLeuIleSerPheLeuPheValProCysTrpLeuPheMet : 58 |..!!!!:!!||||||:!!|||!!:|||||| !!!.||| !! !! ! |||!:!:!! tGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrVal 227028 : GGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTG : 227084 59 : MetLeuGluValGluAsnLeuTyrAspLysLeuLysLeuPheGlyProLeuSerPheC : 78 :!:|||||||||:!!..! !|||:!!! !||||||:!!.!!||||||:!!||||||! ValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPheP 227085 : GTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCT : 227144 79 : ysValMetAlaTyrMetLysTyrTyrSerLeuMetThrHisAlaAsnAspIleArgGl : 97 !!.!|||:!! !:!:||||||! !! !|||! ! !|||! !:!!||||||! !|| heAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGl 227145 : TCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGA : 227201 98 : uCysIleLysTyrIleGluTrpAspTrpArgAsnValLysTyrSerLysAspArgGlu : 116 ||||:!!:!! |||:!!|||||||||!:!|||:!!!:!||| !:!!||||||.!. uCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsn 227202 : GTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAAC : 227258 117 : IleMetValAlaAsnAlaLysPheGlyArgArgLeuValLysIleCysMetPhePheM : 136 :!:||||||.!! !!||| ! !:!||||||!:!|||:!!! ||||||! !||||||: ValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheV 227259 : GTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCG : 227318 137 : etTyrSerGlyPheValPheTyrTyrIleAlaLeuProIleArgValGlyArgIleTh : 155 !:!:!|||...|||||||||:::||||||!.!:!!||||||!.!!.!|||!!!:!!.! alPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerValAl 227319 : TCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGC : 227375 156 : rValGluGluGlnAsnValThrPheIleProMetValPheProMetThrLysPheMet : 174 !..!|||!!: !||| !!:!!:!|||! !||| !||||||.!. !!|||.!!!!: aThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIleIle 227376 : AACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATC : 227432 175 : ProAspThrArgHisArgProLeuAsnGluIlePhePheSerIleGlnPhePheGlyG : 194 !!|||..!|||:!!!!!|||!!!||||||||||||||||||:!!|||||| ! !| AlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValThrG 227433 : GCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAG : 227492 195 : lyIleValIleHisGlyValAlaAlaAlaThrCysSerLeuValAlaAlaLeuAlaVa : 213 ||||||||:!:|||||||||.!!:!!|||.!!||||||:!!!.!||| !|||||||| lyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaVa 227493 : GTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGT : 227549 214 : lHisAlaCysGlyGlnValLysIleLeuLeuArgTrpLeuGluHisLeuIleGluGly : 232 ||||||||||||||||:!!:!!:!:|||:!! !||||||! !|||||||||!!:||| lHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGly 227550 : TCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGC : 227606 233 : ArgProAspMetSerLysSerValAspLysArgIleAlaGlyIleValSerGlnHisV : 252 ||| !!||||||||||||!!!:!!||| ! |||||||||.!!||||||!!!!!.|||| ArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValThrHisHisV 227607 : AGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACCACG : 227666 253 : alArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheLeuSerIl : 260 |||||||||||{!!} 396 bp {.}||||||:!!:! alArgIleLeu{As}++ ++{n}PheLeuAlaLe 227667 : TTCGAATATTG{AA}gt.........................ag{C}TTTCTGGCCCT : 228086 261 : eThrGluMetAlaMetArgGlnIleSerPheValGluPheThrGlyCysThrLeuAsn : 279 !! !|||! .!!|||!:!||||||:!!|||||||||||| !|||||||||:!!! ! uIleGluLysThrMetGlnGlnIleAlaPheValGluPheLeuGlyCysThrIleIle 228087 : CATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGTACAATAATT : 228143 280 : LeuCysLeuLeuGlyTyrTyrAlaIleMet >>>> Target Intron 2 >>>> : 290 |||||||||:!!! !|||||| !|||! ! 72 bp LeuCysLeuIleGluTyrTyrIleIleThr++ + 228144 : CTGTGCCTCATCGAGTATTACATCATAACGgt.........................a : 228246 291 : GluTrpAspProAsnAspLeuThrAlaThrValThrTyrIleThrIleLeuValSer : 308 ||||||:!!|||!!.!!:|||||| !.!!||||||||| !.!!:!!|||:!!||| +GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSer 228247 : gGAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCC : 228302 309 : LeuGlyPheAsnIlePheIlePheCysTyrIleGlyAspLeuValAlaGluHis >> : 327 !!! ||||||||||||||||||||||||||||||!!::!!|||||||||||| PheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluHis++ 228303 : TTTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACgt.. : 228361 328 : >> Target Intron 3 >>>> CysAsnArgValGlyGluValAlaTyrMetIle : 337 1889 bp |||!..!:!||||||||| !:!!||||||||| ++CysArgLysValGlyGluLysSerTyrMetIle 228362 : .......................agTGCAGAAAAGTCGGCGAAAAGTCGTACATGATC : 230278 338 : AspTrpTyrGlnLeuTrpGlyAsnArgLysArgCysLeuIleLeuIleIleAlaMetS : 357 !!:||||||!:!||| ||||||!:!|||! !|||! !||||||||||||||||||| GluTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetS 230279 : GAATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGT : 230338 358 : erAsnCysSerThrLysLeuThrAlaGlyLysMetValGluLeuSerLeuSerThrPh : 376 |||||||||||||||||!!!|||||||||!!.|||||||||||||||:!!!:!||||| erAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnThrPh 230339 : CCAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACACTTT : 230395 377 : eGlyAspVal : 379 |.!!|||||| eSerAspVal 230396 : CAGCGACGTA : 230406 vulgar: Lalb_14632 0 379 . KQ414889.1 226912 230406 + 1158 M 255 765 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226913 230406 1158 + . gene_id 3 ; sequence Lalb_14632 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226913 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226913 227679 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230406 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230406 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226913 230406 1158 + . alignment_id 3 ; Query Lalb_14632 ; Align 226913 1 765 ; Align 228077 257 99 ; Align 228248 290 111 ; Align 230248 327 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 958 Query range: 0 -> 379 Target range: 208194 -> 211932 1 : HisArgThrAsnValAsnLeuSerIleGlnTrpAsnArgTrpIleLeuArgProMetG : 20 :!!!:!!.!:!!:!!!:!!!!!:!:!!!:: !||| !|||! |||!:! !!!:| TyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuLysIleIleG 208195 : TACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGAAGATAATCG : 208252 21 : lyValTrpProSerSerGlyThrAspSerGlyPheGluLysCysSerAsnArgLeuMe : 39 || !||||||!!!||| ! ! !||| !!!!.|||!!. !!..!:!!! !|||:! lySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHisIleLeuLe 208253 : GCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCATATTCTCTT : 208309 40 : tAsnLeuValCysTyrSerLeuIleSerPheLeuPheValProCysTrpLeuPheMet : 58 :|||:!!:!! !!:!!!!!|||:!!.!!|||:!! ! :!!||| ! ! :!!||| ! uAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGlyMetPheAla 208310 : AAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATGTTCGCG : 208366 59 : MetLeuGluValGluAsnLeuTyrAspLysLeuLysLeuPheGlyProLeuSerPheC : 78 !!:|||! !||||||:!!!!!||||||:!!||||||:!!! !.!! !!|||||||||! IleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaLeuSerPheP 208367 : ATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTCTGAGCTTCT : 208426 79 : ysValMetAlaTyrMetLysTyrTyrSerLeuMetThrHisAlaAsnAspIleArgGl : 97 !:!!||||||!:!! !|||||| ! !:!!! ..!!.!! !..!|||||||||:! heMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAspIleArgLy 208427 : TCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGACATACGGAA : 208483 98 : uCysIleLysTyrIleGluTrpAspTrpArgAsnValLysTyrSerLysAspArgGlu : 116 !|||:!!:!!|||:!!||| |||||||||||||||:!!:!!..!:!!||||||:!! sCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGluAspArgLys 208484 : GTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAGGACAGGAAG : 208540 117 : IleMetValAlaAsnAlaLysPheGlyArgArgLeuValLysIleCysMetPhePheM : 136 ||||||:!!! !||||||!..|||!.!|||!:!|||:!! !|||||| !|||| IleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysGlyAlaPheM 208541 : ATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCGGAGCTTTCA : 208600 137 : etTyrSerGlyPheValPheTyrTyrIleAlaLeuProIleArgValGlyArgIleTh : 155 |||||.!!||| :::|||||||||||||||||||||:!!! ! !! !!:!:!!.. etTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAspLysValVa 208601 : TGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGACAAGGTCGT : 208657 156 : rValGluGluGlnAsnValThrPheIleProMetValPheProMetThrLysPheMet : 174 !! !|||! |||:!!|||!:!! ! !:!!|||!:!|||:!: !!||||||!!: lGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValProLysPheIle 208658 : CGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCTAAGTTCATT : 208714 175 : ProAspThrArgHisArgProLeuAsnGluIlePhePheSerIleGlnPhePheGlyG : 194 ! !|||..!|||:!!!!!|||:!!||||||||||||!:!!!!:!!|||!!.!!...!| LeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnLeuLeuSerG 208715 : CTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAATTGTTGTCGG : 208774 195 : lyIleValIleHisGlyValAlaAlaAlaThrCysSerLeuValAlaAlaLeuAlaVa : 213 ||.!!||| !|||..!:!!.!!!.!!.!.!!|||.!!|||!.!||| !||||||:! lyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLeuLeuAlaMe 208775 : GTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCTGCTCGCGAT : 208831 214 : lHisAlaCysGlyGlnValLysIleLeuLeuArgTrpLeuGluHisLeuIleGluGly : 232 !|||||||||||||||:!!:!!||||||:!! !|||:!!||| ! |||:!!!!:||| tHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeuValAspGly 208832 : GCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTGGTCGATGGA : 208888 233 : ArgProAspMetSerLysSerValAspLysArgIleAlaGlyIleValSerGlnHisV : 252 ||| !||| !..!|||!:!:!!|||:!!|||:!:|||..!||||||..!||||||| ArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleValGluGlnHisV 208889 : CGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCGTGGAGCAGCATG : 208948 253 : alArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheLeuSerIl : 260 |||||:!::!!{!!} 1536 bp {.}|||:!!:!!:! alArgValIle{As}++ ++{n}PheIleAlaLe 208949 : TTCGAGTGATC{AA}gt.........................ag{T}TTTATAGCTCT : 210508 261 : eThrGluMetAlaMetArgGlnIleSerPheValGluPheThrGlyCysThrLeuAsn : 279 :||||||! !:!!!.!:!!||||||!!.:!!|||.!...!||||||||||||||| uThrGluAsnLeuLeuHisGluIleSerLeuIleGluMetValGlyCysThrLeuAsn 210509 : GACAGAGAACCTCCTGCACGAGATATCATTGATAGAAATGGTGGGGTGCACTCTGAAC : 210565 280 : LeuCysLeuLeuGlyTyrTyrAlaIleMet >>>> Target Intron 2 >>>> : 290 :!!|||!!!||||||||||||.!!!!:!!: 66 bp MetCysPheLeuGlyTyrTyrThrMetIle++ + 210566 : ATGTGTTTCCTTGGCTATTACACGATGATTgt.........................a : 210662 291 : GluTrpAspProAsnAspLeuThrAlaThrValThrTyrIleThrIleLeuValSer : 308 ||||||||| !!!!.|||! !! !::!!:!:!!|||||||||..!:!!|||..!||| +GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValLeuLeuThrSer 210663 : gGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTACTCCTCACTTCT : 210718 309 : LeuGlyPheAsnIlePheIlePheCysTyrIleGlyAspLeuValAlaGluHis >> : 327 :!! !||||||||||||||||||||||||||||||!!::!!:!!||||||!!. ValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAlaGluGln++ 210719 : GTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGCTGAACAggt.. : 210777 328 : >> Target Intron 3 >>>> CysAsnArgValGlyGluValAlaTyrMetIle : 337 999 bp !:!||||||||| !:!!||||||||| ++ThrValLysValGlyGluLysSerTyrMetIle 210778 : .......................agACAGTAAAAGTTGGAGAAAAGTCTTACATGATC : 211804 338 : AspTrpTyrGlnLeuTrpGlyAsnArgLysArgCysLeuIleLeuIleIleAlaMetS : 357 |||||||||!:!:!! |||!!.!:! ! !:!! !|||!!:|||:!!|||| AspTrpTyrArgMetProGlyLysLysGlyLeuValValProLeuMetIleSerMetS 211805 : GACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGATGATCTCCATGT : 211864 358 : erAsnCysSerThrLysLeuThrAlaGlyLysMetValGluLeuSerLeuSerThrPh : 376 ||:!!! !!!||||||:!!|||||||||!!.:!::!!! ||||||:!!|||!:!|| erHisSerThrThrLysIleThrAlaGlyAsnLeuIleValLeuSerIleSerSerPh 211865 : CACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTTCTTTCAATCAGTAGTTT : 211921 377 : eGlyAspVal : 379 |||||||||| eGlyAspVal 211922 : CGGTGACGTA : 211932 vulgar: Lalb_14632 0 379 . KQ414889.1 208194 211932 + 958 M 255 765 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 995 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208195 211932 958 + . gene_id 4 ; sequence Lalb_14632 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208195 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208195 208961 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211932 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211932 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208195 211932 958 + . alignment_id 4 ; Query Lalb_14632 ; Align 208195 1 765 ; Align 210499 257 99 ; Align 210664 290 111 ; Align 211774 327 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 892 Query range: 0 -> 258 Target range: 221360 -> 222134 1 : HisArgThrAsnValAsnLeuSerIleGlnTrpAsnArgTrpIleLeuArgProMetG : 20 :!!!:!|||||||||!!.||||||:!:|||! !!:!||||||||||||!:!|||!!:| TyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleG 221361 : TACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCG : 221418 21 : lyValTrpProSerSerGlyThrAspSerGlyPheGluLysCysSerAsnArgLeuMe : 39 |||||||||||!:!|||!.!!.! !||| ! ! |||!:!! ! ! !! !!|||!! lyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLeuIl 221419 : GTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCTGAT : 221475 40 : tAsnLeuValCysTyrSerLeuIleSerPheLeuPheValProCysTrpLeuPheMet : 58 :|||:!!||||||||||||||||||!!!||||||!!.||||||||| ! |||!:!:!! eAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyrVal 221476 : AAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTG : 221532 59 : MetLeuGluValGluAsnLeuTyrAspLysLeuLysLeuPheGlyProLeuSerPheC : 78 !!:||||||||||||:!!:!!|||:!!!:!:!!||||||!!.|||||||||||||||| IleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheC 221533 : ATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCT : 221592 79 : ysValMetAlaTyrMetLysTyrTyrSerLeuMetThrHisAlaAsnAspIleArgGl : 97 |||||||||||!:!:!:||||||:!! !|||!!: !:!!! !|||||||||||||| ysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGl 221593 : GCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGA : 221649 98 : uCysIleLysTyrIleGluTrpAspTrpArgAsnValLysTyrSerLysAspArgGlu : 116 |||||||:!! !|||||||||||||||!:!|||:!!! ||||||||||||!:!!!: uCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLysAsp 221650 : GTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAGGAT : 221706 117 : IleMetValAlaAsnAlaLysPheGlyArgArgLeuValLysIleCysMetPhePheM : 136 ||||||:!!! !||||||! |||||||||||||||:!!! !||||||! ||||||| IleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheM 221707 : ATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCA : 221766 137 : etTyrSerGlyPheValPheTyrTyrIleAlaLeuProIleArgValGlyArgIleTh : 155 ||||||||||||||||||||||||||||||||:!!|||.!!!!!||||||!:!||| ! etTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIlePr 221767 : TGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCC : 221823 156 : rValGluGluGlnAsnValThrPheIleProMetValPheProMetThrLysPheMet : 174 !!.!:!!!!: ||||||||||||||||||||||||||||||.!.:!!!:!|||!!: oAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPheIle 221824 : TGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATC : 221880 175 : ProAspThrArgHisArgProLeuAsnGluIlePhePheSerIleGlnPhePheGlyG : 194 !|||||||||:!!!!!|||:!!|||||||||.!.||||||:!!|||.!!.!.!.!| ValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaG 221881 : GTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGG : 221940 195 : lyIleValIleHisGlyValAlaAlaAlaThrCysSerLeuValAlaAlaLeuAlaVa : 213 || !:!!!!:|||.!!:!!.!!:!!|||.!!||||||||||||||| !!!!||||| lyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaVa 221941 : GTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGT : 221997 214 : lHisAlaCysGlyGlnValLysIleLeuLeuArgTrpLeuGluHisLeuIleGluGly : 232 ||||||||||||||||:!!:!!:!:|||:!!!!!||||||:!!|||||||||.!.||| lHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsnGly 221998 : GCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGC : 222054 233 : ArgProAspMetSerLysSerValAspLysArgIleAlaGlyIleValSerGlnHisV : 252 ||| !!||||||!!!!!.!:!||||||!:!||||||||| !||||||!:!||||||| ArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnHisV 222055 : CGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAACACG : 222114 253 : alArgIleLeuLysPheLeu : 258 |||||||||||:!!!:!:!! alArgIleLeuGlnTyrVal 222115 : TTCGAATATTGCAGTATGTA : 222134 vulgar: Lalb_14632 0 258 . KQ414889.1 221360 222134 + 892 M 258 774 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221361 222134 892 + . gene_id 5 ; sequence Lalb_14632 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221361 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221361 222134 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221361 222134 892 + . alignment_id 5 ; Query Lalb_14632 ; Align 221361 1 774 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 484 Query range: 2 -> 289 Target range: 259760 -> 260881 3 : ThrAsnValAsnLeuSerIleGlnTrpAsnArgTrpIleLeuArgProMetGlyValT : 22 !:!:!! !:!!! !|||:!!|||!::|||||||||.!!|||!:!|||!!:|||!.!| SerHisSerAspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaT 259761 : AGCCACAGTGACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTT : 259818 23 : rpProSerSerGlyThrAspSerGlyPheGluLysCysSerAsnArgLeuMetAsnLe : 41 ||||| !!|||..!:!! !!! !!.!!|||||| !! !::! !:!!:!!! !!! rpProProSerSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePh 259819 : GGCCACCTTCATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTT : 259875 42 : uValCysTyrSerLeuIleSerPheLeuPheValProCysTrpLeuPheMetMetLeu : 60 !:!!||||||||| !||| ! !! !.!.:!!|||||| ||| !|||:!:||| eIleCysTyrSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeu 259876 : TATCTGCTACAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTC : 259932 61 : GluValGluAsnLeuTyrAspLysLeuLysLeuPheGlyProLeuSerPheCysValM : 80 ||| !|||!:!|||||| ||| !|||:!!.!!|||||||||!!! !!! !!: GluLysGluSerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheV 259933 : GAGAAGGAGAGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCG : 259992 81 : etAlaTyrMetLysTyrTyrSerLeuMetThrHisAlaAsnAspIleArgGluCysIl : 99 !:!.!! !!!:!!.||| !!!|||:!! !...!.!!..||||||! !...|||:! alGlyCysIleAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysVa 259993 : TCGGCTGTATTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGT : 260049 100 : eLysTyrIleGluTrpAspTrpArgAsnValLysTyrSerLysAspArgGluIleMet : 118 ::!!:!!:!:||| |||||||||! !:!!! ! ..!||||||!:!.!.:!:||| lGluHisValGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMet 260050 : GGAACACGTGGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATG : 260106 119 : ValAlaAsnAlaLysPheGlyArgArgLeuValLysIleCysMetPhePheMetTyrS : 138 :!! ! !!||||||||||||||| !:!!!.! !||| ! !|||:!! ! . LeuArgTyrAlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnG 260107 : TTGAGATACGCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGG : 260166 139 : erGlyPheValPheTyrTyrIleAlaLeuProIleArgValGlyArgIleThrValGl : 157 !!||| !!:!!! !!:!! !:!:!.! ! !:!:!!!..!! ! !||| !|||! lyGlyValLeuCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGl 260167 : GCGGAGTTCTGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGG : 260223 158 : uGluGlnAsnValThrPheIleProMetValPheProMetThrLysPheMetProAsp : 176 !.!.:!!!.. !! ! !! !! !:!! !! ! !!:!! !||| :!! !:!! yAsnGluThrArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsn 260224 : AAACGAGACGAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAAC : 260280 177 : ThrArgHisArgProLeuAsnGluIlePhePheSerIleGlnPhePheGlyGlyIleV : 196 ..!!.! !!!!!|||:!!||||||||| !!.!! !:!:|||||| !!..!|||.!!: ValAsnAspSerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheI 260281 : GTGAACGACAGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCA : 260340 197 : alIleHisGlyValAlaAlaAlaThrCysSerLeuValAlaAlaLeuAlaValHisAl : 215 !!:!::!!..! !.!!!.!!.!! !! !||||||!.!|||!.!|||.!!!.!||||| leValAsnSerSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAl 260341 : TAGTGAATTCGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGC : 260397 216 : aCysGlyGlnValLysIleLeuLeuArgTrpLeu<->GluHisLeuIleGluGlyArg : 233 ||||||||||:!!!!.:!:|||:!!..!|||:!! ||| !:!! !|||..!||| aCysGlyGlnLeuAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArg 260398 : GTGCGGCCAGTTGAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGG : 260454 234 : ProAspMetSerLysSerValAspLysArgIleAlaGlyIleValSerGlnHisValA : 253 ! ! !!.!|||:!! ! !|||..!|||!.!! !||||||..!!!.|||:!!| AsnArgLysLysLysAlaProPheLysGluIleGlyValIleValGluHisHisLeuA 260455 : AACAGGAAGAAAAAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGA : 260514 254 : rgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheLeuSerIleTh : 261 || !|||{! } 257 bp { }|||:!!||| !! rgAlaLeu{Th}++ ++{r}PheIleSerArgIl 260515 : GAGCACTC{AC}gt.........................ag{C}TTCATATCGCGTAT : 260795 262 : rGluMetAlaMetArgGlnIleSerPheValGluPheThrGlyCysThrLeuAsnLeu : 280 !||| !.!|||!.!!:!|||!!!|||:!!|||!!. ! !!|||||||||:!!:!! eGluAspValMetAsnArgIleCysPheLeuGluLeuPheArgCysThrLeuAspIle 260796 : CGAGGATGTGATGAACCGGATATGCTTCCTGGAGTTGTTCAGGTGCACTCTGGATATA : 260852 281 : CysLeuLeuGlyTyrTyrAlaIleMet : 289 |||||||||||||||||| !:!!||| CysLeuLeuGlyTyrTyrIleLeuMet 260853 : TGTCTACTTGGCTACTATATTCTTATG : 260881 vulgar: Lalb_14632 2 289 . KQ414889.1 259760 260881 + 484 M 224 672 G 0 3 M 29 87 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259761 260881 484 + . gene_id 6 ; sequence Lalb_14632 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259761 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259761 260524 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259761 260881 484 + . alignment_id 6 ; Query Lalb_14632 ; Align 259761 3 672 ; Align 260436 227 87 ; Align 260783 257 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 471 Query range: 5 -> 288 Target range: 256649 -> 257577 6 : AsnLeuSerIleGlnTrpAsnArgTrpIleLeuArgProMetGlyValTrpProSerS : 25 :!!! !|||:!!|||! !|||||||||.!!|||!:!|||!!:|||!.!|||||| !!| AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS 256650 : GATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCT : 256707 26 : erGlyThrAspSerGlyPheGluLysCysSerAsnArgLeuMetAsnLeuValCysTy : 44 ||..!:!! !!!! !.!!|||::! ! !:::! !:!!:!!|||:!!|||||||| erSerSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTy 256708 : CGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTA : 256764 45 : rSerLeuIleSerPheLeuPheValProCysTrpLeuPheMetMetLeuGluValGlu : 63 |.!!! !|||! !||| !!!.:!!||||||! !||| !:!:.!.|||!!:! !!!: rGlySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAsp 256765 : TGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGAC : 256821 64 : AsnLeuTyrAspLysLeuLysLeuPheGlyProLeuSerPheCysValMetAlaTyrM : 83 !:!!!!||| |||:::||| |||||||||:!!||| !!! :!!!!:::!! ! SerPheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysA 256822 : AGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTG : 256881 84 : etLysTyrTyrSerLeuMetThrHisAlaAsnAspIleArgGluCysIleLysTyrIl : 102 !!.||| ! !|||:!! !!!.!.!!!.||||||||| ! |||:!!:!!:!!|| laAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIl 256882 : CCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATAT : 256938 103 : eGluTrpAspTrpArgAsnValLysTyrSerLysAspArgGluIleMetValAlaAsn : 121 |||| !|||||||||! |||!:! ..!||||||!:!:!!:!:|||:!! !||| eGluThrAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsn 256939 : AGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAAC : 256995 122 : AlaLysPheGlyArgArgLeuValLysIleCysMetPhePheMetTyrSerGlyPheV : 141 |||!:!||||||||| !:!!!.!! !.!!||| !.!!||| ! |||||| AlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValP 256996 : GCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttt : 257055 142 : alPheTyrTyrIleAlaLeuProIleArgValGlyArgIleThrValGluGluGlnAs : 160 ::::::::::!!! ! !!:!:!.!..!! !! !||| !|||! !.!.:!!!. heCysPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluTh 257056 : tctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAAC : 257112 161 : nValThrPheIleProMetValPheProMetThrLysPheMetProAspThrArgHis : 179 ...!! ! ! ! !:!: ! !! !!:!! !||| :!! !:!!..! !!!. rThrIleValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGln 257113 : AACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAG : 257169 180 : ArgProLeuAsnGluIlePhePheSerIleGlnPhePheGlyGlyIleValIleHisG : 199 !!!||| !||||||||| ! !!! !!!:||| !!::..!..!|||:!! ! SerProThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrT 257170 : AGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTA : 257229 200 : lyValAlaAlaAlaThrCysSerLeuValAlaAlaLeuAlaValHisAlaCysGlyGl : 218 ! !.!!!.!::!! !! !||||||!.!|||!.!!!!|||..!||||||! !||||| hrSerThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGl 257230 : CTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCA : 257286 219 : nValLysIleLeuLeuArgTrpLeuGluHisLeuIleGluGlyArgProAspMetSer : 237 |:!!! :!:|||:!! !|||:!! !.!.!!!:!:.!.! ! ! !:!! ... nLeuThrValLeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGlu 257287 : GTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggag : 257343 238 : LysSerValAsp<->LysArgIleAlaGlyIleValSerGlnHisValArgIleLeu{ : 256 |||::: |||!:!|||!.!! !||||||..!!!.|||:!!|||:!:|||{ LysThrPheProPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{ 257344 : aaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{ : 257403 257 : Ly} >>>> Target Intron 1 >>>> {s}PheLeuSerIleThrGluMetAl : 264 !.} 76 bp {.}|||:!!||| !! !||| !. Se}++ ++{r}PheIleSerTyrIleGluGluVa 257404 : AG}gt.........................ag{T}TTCATATCATATATCGAGGAAGT : 257503 265 : aMetArgGlnIleSerPheValGluPheThrGlyCysThrLeuAsnLeuCysLeuLeu : 283 !|||!.!!:!|||!!!|||:!!|||!!. ! !!||||||||| !:!!|||:!!||| lMetAsnArgIleCysPheLeuGluLeuPheArgCysThrLeuAlaIleCysMetLeu 257504 : GATGAACCGAATATGTTTTTTAGAGTTGTTTAGATGCACGCTGGCTATATGCATGCTG : 257560 284 : GlyTyrTyrAlaIle : 288 ||||||||| !:!! GlyTyrTyrIleLeu 257561 : GGATACTACATTCTT : 257577 vulgar: Lalb_14632 5 288 . KQ414889.1 256649 257577 + 471 M 236 708 G 0 3 M 14 42 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256650 257577 471 + . gene_id 7 ; sequence Lalb_14632 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256650 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256650 257404 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257577 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257577 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256650 257577 471 + . alignment_id 7 ; Query Lalb_14632 ; Align 256650 6 708 ; Align 257361 242 42 ; Align 257482 257 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 454 Query range: 7 -> 260 Target range: 232462 -> 233221 8 : SerIleGlnTrpAsnArgTrpIleLeuArgProMetGlyValTrpProSerSerGlyT : 27 ||||||||| !|||||||||.!!|||! !|||||||||!.!|||||| !! ! ! SerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgValThrG 232463 : AGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTGTTACAG : 232520 28 : hrAspSerGlyPheGluLysCysSerAsnArgLeuMetAsnLeuValCysTyrSerLe : 46 ! !||| !! !:!!:!! ! !:!|||:!!!..|||..!|||:!!||||| luThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHisSerLe 232521 : AGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCATTCTCT : 232577 47 : uIleSerPheLeuPheValProCysTrpLeuPheMetMetLeuGluValGluAsnLeu : 65 |!!:! !! !! !.!!||||||||| ||||||!!::!!!!!|||! ! !!:!||| uMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThrSerLeu 232578 : GATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACGAGCCTA : 232634 66 : TyrAspLysLeuLysLeuPheGlyProLeuSerPheCysValMetAlaTyrMetLysT : 85 ! !!:!:!:!!|||! !.!!||||||:!!||| !! !:!!|||!.! ! :!!!!.| GluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluLeuAsnT 232635 : GAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAATTGAATT : 232694 86 : yrTyrSerLeuMetThrHisAlaAsnAspIleArgGluCysIleLysTyrIleGluTr : 104 ||! !!!!|||:!!.!! ! ||||||||||||! ! ! |||:!::!! ! :!::!! yrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnValLysGl 232695 : ATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGTGAAACA : 232751 105 : pAspTrpArgAsnValLysTyrSerLysAspArgGluIleMetValAlaAsnAlaLys : 123 !|||||||||||||||||| ! !! !!|||!!::!:|||:!! !||||||||| nAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsnAlaLys 232752 : GGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAACGCGAAA : 232808 124 : PheGlyArgArgLeuValLysIleCysMetPhePheMetTyrSerGlyPheValPheT : 143 .!!|||||| !:!!!.! |||..! !|||! !|||:!!!!!||| !!! !! ! LeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValGlySerA 232809 : CTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCGGCTCCG : 232868 144 : yrTyrIleAlaLeuProIleArgValGlyArgIleThrValGluGluGlnAsnValTh : 162 !! ! |||!.! ! !:!!|||:!!.!!! !.!! !|||! !.!.:!!!:! !:! spGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSerTyrSe 232869 : ACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAGTTACTC : 232925 163 : rPheIleProMetValPheProMetThrLysPheMetProAspThrArgHisArgPro : 181 !.!. !|||:!: !! ! !!.!. !! ! :!! !||||||||| !!!!||| rMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPheSerPro 232926 : GATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTCAGTCCG : 232982 182 : LeuAsnGluIlePhePheSerIleGlnPhePheGlyGlyIleValIleHisGlyValA : 201 !|||||||||.!.||| !:!!|||! !.!!..!|||.!!:!!:!::!!..!|||. ThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnSerValT 232983 : ACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACTCCGTTA : 233042 202 : laAlaAlaThrCysSerLeuValAlaAlaLeuAlaValHisAlaCysGlyGlnValLy : 220 !!!.!!.!.!!|||.!!|||! !|||!.!||||||:!!|||||||||||||||:!!!! hrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGlnLeuAs 233043 : CTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACAGCTGAA : 233099 221 : sIleLeuLeuArgTrpLeuGluHisLeuIleGluGlyArgProAspMetSerLysSer : 239 .:!::!!:!! ! |||!!: !!|||:!:!!:!.!!:! !.!. !..!!:! ! nValValMetSerLysLeuAspAspLeuValAspAlaLysGlyGlnGluGluArgVal 233100 : CGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAGGAGGAGAGAGTC : 233156 240 : ValAspLysArgIleAlaGlyIleValSerGlnHisValArgIleLeuLysPheLeuS : 259 !.!.!.!:!!:!:!!!.! !||||||..!!!.|||:!!|||! !|||!:!!:!|||| AlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeuArgTyrLeuS 233157 : GCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTAAGGTATTTGT : 233216 260 : erIle : 260 ||:!: erVal 233217 : CTGTG : 233221 vulgar: Lalb_14632 7 260 . KQ414889.1 232462 233221 + 454 M 253 759 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232463 233221 454 + . gene_id 8 ; sequence Lalb_14632 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232463 233221 . + . KQ414889.1 exonerate:protein2genome:local exon 232463 233221 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232463 233221 454 + . alignment_id 8 ; Query Lalb_14632 ; Align 232463 8 759 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 441 Query range: 2 -> 288 Target range: 284511 -> 286795 3 : ThrAsnValAsnLeuSerIleGlnTrpAsnArgTrpIleLeuArgProMetGlyValT : 22 |||:!! !! ! !|||:!!||| !|||||||||.!!|||!:!|||!!:||||||| ThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValT 284512 : ACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTAT : 284569 23 : rpProSerSerGlyThrAspSerGlyPheGluLysCysSerAsnArgLeuMetAsnLe : 41 ||||| !||| ! !! !!! !!!.|||||| !|||::! !:!!:!: || rpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLe 284570 : GGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTT : 284626 42 : uValCysTyrSerLeuIleSerPheLeuPheValProCysTrpLeuPheMetMetLeu : 60 |:!! !!! !! !||||||.!!||||||!!.||||||||| |||! !! :!!||| uIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeu 284627 : AATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTC : 284683 61 : Glu<->ValGluAsnLeuTyrAspLysLeuLysLeuPheGlyProLeuSerPheCysV : 79 !!: ..!! :!!||| !! |||:!!|||:!!.!!||||||||||||||||||: AspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysM 284684 : GACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCA : 284743 80 : alMetAlaTyrMetLysTyrTyrSerLeuMetThrHisAlaAsnAspIleArgGluCy : 98 !!|||||| !!:|||||||||! !|||!!::!!!.!!.!..! ! ||| !!:!!|| etMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCy 284744 : TGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATG : 284800 99 : sIleLysTyrIleGluTrpAspTrpArg<-><-><->AsnValLysTyrSerLysAsp : 114 |:!:||| !!|||... !|||||| ! ::: !!.. ...:::::: sValLysAspIleArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGlu 284801 : CGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggag : 284857 115 : ArgGluIleMetValAlaAsnAlaLysPheGlyArgArgLeuValLysIleCysMetP : 134 |||||||||||| !! !!:!|||!:!.!!|||||| !|||!.!! .!!||| ArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaG 284858 : agagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCG : 284917 135 : hePheMetTyrSerGlyPheValPheTyrTyrIleAlaLeuProIleArgValGlyAr : 153 !||||||||||||||| !!|||||| !! !.!:!!|||:!: !!..!! !|| lyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysThrValAr 284918 : GTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACG : 284974 154 : gIleThrValGluGluGlnAsnValThrPheIleProMetValPheProMetThrLys : 172 |! !:!! !!: |||! !||| ! ! ! !!...!.!||||||!!: !::: gThrGluIleIleAsp---AsnGluThrValArgSerGlnAlaPheProIleTyrArg 284975 : CACGGAGATCATCGAC---AACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGC : 285028 173 : PheMetProAspThrArgHisArgProLeuAsnGluIlePhePheSerIleGlnPheP : 192 !:!:! !||| !!||| !!!!|||! ! !|||||| ! ! !!!:|||! !! GlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysL 285029 : GGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCT : 285088 193 : heGlyGlyIleValIleHisGlyValAlaAlaAlaThrCysSerLeuValAlaAlaLe : 211 !.!.!!.!.!!||||||:!!..!|||.!!!.!!.!.!!|||||||||!.!|||!.!!! euAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPh 285089 : TGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTT : 285145 212 : uAlaValHisAlaCysGlyGlnValLysIleLeuLeuArgTrpLeuGluHisLeuIle : 230 !!.!:!!|||!.!||||||||| !!!:!||||||:!!! ! !|||!!: ! |||:!! eValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuVal 285146 : CGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTC : 285202 231 : GluGlyArgProAspMetSer<-><->LysSerValAspLysArgIleAlaGlyIleV : 248 !!:||| ! !! ! !!.! !..!!! !!!::!!|||:!:!.!! !|||: AspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleI 285203 : GACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCA : 285262 249 : alSerGlnHisValArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s : 256 !!..!!!.|||:!!!:!||||||{ } 1411 bp { leGluHisHisLeuLysIleLeu{Gl}++ ++{y 285263 : TCGAGCATCATCTGAAGATACTG{GG}gt.........................ag{T : 286699 257 : }PheLeuSerIleThrGluMetAlaMetArgGlnIleSerPheValGluPheThrGly : 275 }|||:!!||| !! !||| ! !:!:!.!:!!|||!!!||||||||| ! ! !||| }PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValIleGly 286700 : }TTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGT : 286754 276 : CysThrLeuAsnLeuCysLeuLeuGlyTyrTyrAlaIle : 288 ||||||||||||:!!|||!!!|||||||||||| !:!: CysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeu 286755 : TGCACGTTGAACATATGCTTTTTGGGATATTATTTACTG : 286795 vulgar: Lalb_14632 2 288 . KQ414889.1 284511 286795 + 441 M 59 177 G 0 3 M 46 138 G 0 9 M 51 153 G 1 0 M 78 234 G 0 6 M 18 54 S 0 2 5 0 2 I 0 1407 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284512 286795 441 + . gene_id 9 ; sequence Lalb_14632 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284512 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284512 285287 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286698 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286795 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286795 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284512 286795 441 + . alignment_id 9 ; Query Lalb_14632 ; Align 284512 3 177 ; Align 284692 62 138 ; Align 284839 108 153 ; Align 284992 160 234 ; Align 285232 238 54 ; Align 286700 257 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 433 Query range: 1 -> 288 Target range: 278561 -> 280008 2 : ArgThrAsnValAsnLeuSerIleGlnTrpAsnArgTrpIleLeuArgProMetGlyV : 21 !.!|||:!! !! ! !|||:!!||| !|||||||||.!!|||!:!|||!!:|||| AsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyV 278562 : AACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCG : 278619 22 : alTrpProSerSerGlyThrAspSerGlyPheGluLysCysSerAsnArgLeuMetAs : 40 |||||||| !||| ! !! !!! !!!.|||||| !|||::! !:!!:!: alTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAl 278620 : TATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGC : 278676 41 : nLeuValCysTyrSerLeuIleSerPheLeuPheValProCysTrpLeuPheMetMet : 59 |||:!! !!! !! !||||||.!!||||||!!.||||||||| |||! !! :!! aLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrVal 278677 : GTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTG : 278733 60 : LeuGlu<->ValGluAsnLeuTyrAspLysLeuLysLeuPheGlyProLeuSerPheC : 78 |||!!: ..!! :!!||| !! |||:!!|||:!!.!!|||||||||||||||| LeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheC 278734 : CTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCT : 278793 79 : ysValMetAlaTyrMetLysTyrTyrSerLeuMetThrHisAlaAsnAspIleArgGl : 97 ||..!|||||| !!:|||||||||! !||||||:!!!.!!.!..! ! ||| !!:! ysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLy 278794 : GCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAA : 278850 98 : uCysIleLysTyrIleGluTrpAspTrpArg<-><-><->AsnValLysTyrSerLys : 113 !|||:!:!!. !!|||... !|||||| ! ::: !::: ...::: sCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGlu 278851 : ATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagag : 278907 114 : AspArgGluIleMetValAlaAsnAlaLysPheGlyArgArgLeuValLysIleCysM : 133 :::|||||||||||| !! !!:!|||!:!.!!|||||| !|||!.!! .!! !! GluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerA 278908 : gagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCG : 278967 134 : etPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaLeuProIleArgValGl : 152 !||||||||||||||| ||||||||| ! !!.!:!!|||:!: !!.!! laGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaVa 278968 : CCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGT : 279024 153 : yArgIleThrValGluGluGlnAsnValThrPheIleProMetValPheProMetThr : 171 !|||! !:!! !!: |||! !||| ! ! ! !!...!.!||||||!!: ! lArgThrGluIleIleAsp---AsnGluThrValArgSerGlnAlaPheProIleTyr 279025 : ACGCACGGAGATCATCGAC---AATGAAACGGTGAGATCTCAAGCGTTCCCGATCTAT : 279078 172 : LysPheMetProAspThrArgHisArgProLeuAsnGluIlePhePheSerIleGlnP : 191 ::: !:!:! !||| !!||| !!!!|||! ! !|||||| ! ! !!!:|||! ArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnC 279079 : CGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAAT : 279138 192 : hePheGlyGlyIleValIleHisGlyValAlaAlaAlaThrCysSerLeuValAlaAl : 210 !!!.!.!!.!.!!|||:!!:!!..!|||.!!!.!!.!.!!|||||||||:!!|||!. ysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaVa 279139 : GCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGT : 279195 211 : aLeuAlaValHisAlaCysGlyGlnValLysIleLeuLeuArgTrpLeuGluHisLeu : 229 !!!!!.!:!!|||!.!||||||||| !!!:!||||||:!!! ! !|||!!: ! ||| lPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeu 279196 : GTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTC : 279252 230 : IleGluGly<->ArgProAspMetSerLysSerVal<->AspLysArgIleAlaGlyI : 247 |||!!:||| !:! ! ! !||| !|||..! !!::!!|||:!:!.!! !| IleAspGlyValLysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspI 279253 : ATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATA : 279312 248 : leValSerGlnHisValArgIleLeu{Ly} >>>> Target Intron 1 >>>> : 256 ||:!!..!!!.|||:!!!:!||||||{ } 571 bp leIleGluHisHisLeuLysIleLeu{Gl}++ + 279313 : TCATCGAGCATCATCTGAAGATACTG{GG}gt.........................a : 279910 257 : {s}PheLeuSerIleThrGluMetAlaMetArgGlnIleSerPheValGluPheThr : 274 { }|||:!!||| !! !||| ! !:!!!.!:!!|||!!!||||||||| ! ! ! +{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValIle 279911 : g{T}TTTATATCGCAAATCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTGATT : 279964 275 : GlyCysThrLeuAsnLeuCysLeuLeuGlyTyrTyrAlaIle : 288 |||||||||||||||:!!|||!!!||| !|||||| !:!! GlyCysThrLeuAsnIleCysPheLeuThrTyrTyrLeuLeu 279965 : GGTTGCACGTTGAACATATGCTTTTTGACATATTATTTACTC : 280008 vulgar: Lalb_14632 1 288 . KQ414889.1 278561 280008 + 433 M 60 180 G 0 3 M 46 138 G 0 9 M 51 153 G 1 0 M 73 219 G 0 3 M 8 24 G 0 3 M 15 45 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278562 280008 433 + . gene_id 10 ; sequence Lalb_14632 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278562 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278562 279340 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280008 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280008 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278562 280008 433 + . alignment_id 10 ; Query Lalb_14632 ; Align 278562 2 180 ; Align 278745 62 138 ; Align 278892 108 153 ; Align 279045 160 219 ; Align 279267 233 24 ; Align 279294 241 45 ; Align 279913 257 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 388 Query range: 5 -> 256 Target range: 266634 -> 267390 6 : AsnLeuSerIleGlnTrpAsnArgTrpIleLeuArgProMetGlyValTrpProSerS : 25 :!!! !|||:!:|||! !|||||||||.!!|||!:!|||!!:|||!.!|||||| !!! AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProL 266635 : GATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGT : 266692 26 : erGlyThrAspSerGlyPheGluLysCysSerAsnArgLeuMetAsnLeuValCysTy : 44 !..! ! ||| !.!!|||::! ! !::! ! !:!!! !:!!:!!||||| euSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266693 : TGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 45 : rSerLeuIleSerPheLeuPheValProCysTrpLeuPheMetMetLeuGluValGlu : 63 |!!!! !||| !||| ! ! :!!||||||! !!!! !:!::!:||||||! !||| rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 64 : AsnLeuTyrAspLysLeuLysLeuPheGlyProLeuSerPheCysValMetAlaTyrM : 83 !:!:!! ! |||:!!|||:!!||||||||||||||| !!! !!:!:!.! ! SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 84 : etLysTyrTyrSerLeuMetThrHisAlaAsnAspIleArgGluCysIleLysTyrIl : 102 !:!!.||| !!!!|||:!! !!.!::!!!.!!:||||||! |||:!!:!!:!!!! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 103 : eGluTrpAspTrpArgAsnValLysTyrSerLysAspArgGluIleMetValAlaAsn : 121 ::!! |||||||||! !|||! !!:!!|||!:!:!!:!:|||:!! !||| tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 122 : AlaLysPheGlyArgArgLeuValLysIleCysMetPhePheMetTyrSerGlyPheV : 141 |||!:!.!!|||||| !:!!!.!! !.!!||| ! |||||| ! !!!||| !!: AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 142 : alPheTyrTyrIleAlaLeuProIleArgValGlyArgIleThrValGluGluGlnAs : 160 !! !|||! !:!: ! ! !!.!!! !:!! !! !:!: !|||! .!.:!!!. euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 161 : nValThrPheIleProMetValPheProMetThrLysPheMetProAspThrArgHis : 179 ! !! ! ! !! !:!! !! ! !!:!: !||| ||| !! ..! ! ! rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 180 : ArgProLeuAsnGluIlePhePheSerIleGlnPhePheGlyGlyIleValIleHisG : 199 !!!||| !||||||||| !!.!! ! !|||||| ! ..!|||.!!:!!:!::!!. SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 200 : lyValAlaAlaAlaThrCysSerLeuValAlaAlaLeuAlaValHisAlaCysGlyGl : 218 .! !!.!!.!!.!.!!! !||||||!.!|||!.!!!!|||!.!|||||||||||||| erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 219 : nValLysIleLeuLeuArgTrpLeuGluHisLeuIleGluGlyArgProAspMetSer : 237 |:!!!..:!:|||:!!! !|||:!!:!!.!.!!!:!:.!. !! ! !|||! !:! nLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsn 267272 : GCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAAT : 267328 238 : LysSerVal<->AspLysArgIleAlaGlyIleValSerGlnHisValArgIleLeuL : 256 |||!:!||| ! ! !:!|||!.!! !:!!|||..!!!.|||:!!|||:!!|||! LysAsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeuA 267329 : AAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGA : 267388 257 : ys : 256 :! rg 267389 : GG : 267390 vulgar: Lalb_14632 5 256 . KQ414889.1 266634 267390 + 388 M 235 705 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266635 267390 388 + . gene_id 11 ; sequence Lalb_14632 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266635 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266635 267390 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266635 267390 388 + . alignment_id 11 ; Query Lalb_14632 ; Align 266635 6 705 ; Align 267343 241 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 380 Query range: 5 -> 288 Target range: 262846 -> 263770 6 : AsnLeuSerIleGlnTrpAsnArgTrpIleLeuArgProMetGlyValTrpProSerS : 25 :!!! !|||:!:||| |||||||||:!:|||!:!|||!!:|||!.!|||||| !| AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 26 : erGlyThrAspSerGlyPheGluLysCysSerAsnArgLeuMetAsnLeuValCysTy : 44 ||!.!:!! !||| !!.!.|||::! !! ! !|||:!:! !:!!|||||||| erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 45 : rSerLeuIleSerPheLeuPheValProCysTrpLeuPheMetMetLeuGluValGlu : 63 |!!!|||||| !! ! ! !!:!!|||! ! ||| !!!::!:||||||!.!||| rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 64 : AsnLeuTyrAspLysLeuLysLeuPheGlyProLeuSerPheCysValMetAlaTyrM : 83 |||!!!:!! ||||||:!!:!!.!!|||||||||.!! !! !!:!:!.! ! AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 84 : etLysTyrTyrSerLeuMetThrHisAlaAsnAspIleArgGluCysIleLysTyrIl : 102 !:!!.||| !!!!|||:!! !|||::!!!.||||||!:!! |||:!::!!:!!:! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 103 : eGluTrpAspTrpArgAsnValLysTyrSerLysAspArgGluIleMetValAlaAsn : 121 ::!! |||||| !!! !|||! ! !:!!|||!:!...||||||:!! !||| lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 122 : AlaLysPheGlyArgArgLeuValLysIleCysMetPhePheMetTyrSerGlyPheV : 141 ||||||!:!|||||| !:!!!.! !||| !.!!|||||| ! !!!.!!.!!: AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 142 : alPheTyrTyrIleAlaLeuProIleArgValGlyArgIleThrValGluGluGlnAs : 160 !!! ! ! ! !:!!!.! ! !!.!!! !..! ! !||| !! !! .!.:!!!. etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 161 : nValThrPheIleProMetValPheProMetThrLysPheMetProAspThrArgHis : 179 ! !! !.!. ! !:!: !! !|||:!! !||| !!: ! ..! ! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 180 : ArgProLeuAsnGluIlePhePheSerIleGlnPhePheGlyGlyIleValIleHisG : 199 !.!||| !||||||||||||.!!:!!! ||||||.!...!|||.!!:!!:!! !! AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 200 : lyValAlaAlaAlaThrCysSerLeuValAlaAlaLeuAlaValHisAlaCysGlyGl : 218 .!..!.!!!.!!.!.!!! !.!!:!!..!|||!.!!!!|||! !|||||||||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 219 : nValLysIleLeuLeuArgTrpLeuGluHisLeuIleGluGlyArgProAspMetSer : 237 |:!!!!.:!:|||:!! !|||:!! !.!.!!!:!:.!. ! ! !||| !!:! nLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsn 263484 : GTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAAT : 263540 238 : LysSerVal<->AspLysArgIleAlaGlyIleValSerGlnHisValArgIle >> : 255 |||!:!:!! !! ..!|||!.!! !||||||..!!!.|||:!!|||:!! LysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgVal-+ 263541 : AAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTct.. : 263599 256 : >> Target Intron 1 >>>> LeuLysPheLeuSerIleThrGluMetAlaMet : 265 72 bp ! !!..|||:!!..! !! !:!!! !.!||| +-CysSerPheIleAspArgIleLysAsnValMet 263600 : .......................atTGTAGTTTCATAGATCGTATTAAGAATGTGATG : 263699 266 : ArgGlnIleSerPheValGluPheThrGlyCysThrLeuAsnLeuCysLeuLeuGlyT : 285 !!! !|||!!!|||||||||!!. ! !..!||||||:!!:!!|||:!!||||||| SerThrIleCysPheValGluLeuPheLysAlaThrLeuAspIleCysMetLeuGlyT 263700 : AGTACGATATGTTTCGTGGAGTTATTCAAGGCTACGCTGGATATATGCATGCTAGGTT : 263759 286 : yrTyrAlaIle : 288 ||||| !:!! yrTyrIleLeu 263760 : ACTACATACTT : 263770 vulgar: Lalb_14632 5 288 . KQ414889.1 262846 263770 + 380 M 235 705 G 0 3 M 14 42 5 0 2 I 0 68 3 0 2 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 263770 380 + . gene_id 12 ; sequence Lalb_14632 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262847 263596 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263596 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263597 263598 . + . intron_id 1 ; splice_site "CT" KQ414889.1 exonerate:protein2genome:local intron 263597 263668 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263667 263668 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 263669 263770 . + . KQ414889.1 exonerate:protein2genome:local exon 263669 263770 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262847 263770 380 + . alignment_id 12 ; Query Lalb_14632 ; Align 262847 6 705 ; Align 263555 241 42 ; Align 263669 255 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 358 Query range: 11 -> 256 Target range: 303211 -> 304869 12 : AsnArgTrpIleLeuArgProMetGlyValTrpProSerSerGlyThrAspSerGlyP : 31 !:!!:!|||||||||!:! !!:!:|||:!!||||||:!! ! ! !!!:!!!!.! SerLysTrpIleLeuLysSerLeuGlyIleTrpProAlaValLeuAspGluThrAla- 303212 : AGCAAATGGATCCTGAAGTCCCTTGGTATTTGGCCAGCCGTGTTGGACGAAACCGCA- : 303269 32 : heGluLysCysSerAsnArgLeuMetAsnLeuValCysTyrSerLeuIleSerPheLe : 50 !! ! ! !:!:!!! ! ! !:!! !! !!! !:!!:!!! !||| -----GlyPheLeuProLysIleThrIleGlyLeuSerAsnLeuValLeuLeuPheTh 303270 : -----GGATTCCTACCAAAAATCACCATTGGACTCAGTAATTTGGTTCTATTATTCAC : 303320 51 : uPheValProCysTrpLeuPheMetMetLeuGluValGluAsnLeuTyrAspLysLeu : 69 ! ! :!!|||||| ||| !!!:!!:!!!||| !:!!:!! ! !:!||| rValIleProCysIleLeuHisIleIlePheGluGlnLysAspThrIleIleArgLeu 303321 : CGTGATACCGTGTATTCTACACATAATATTCGAACAAAAGGATACGATAATAAGATTG : 303377 70 : LysLeuPheGlyProLeuSerPheCysValMetAlaTyrMetLysTyrTyrSerLeuM : 89 ||||||||||||! !||||||||||||:!!!!::!!! |||||||||!:::!!||| LysLeuPheGlyLeuLeuSerPheCysLeuIleSerLeuMetLysTyrTrpAlaLeuA 303378 : AAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTTGATGAAGTATTGGGCCCTCG : 303437 90 : etThrHisAlaAsnAspIleArgGluCysIleLysTyrIleGluTrpAspTrpArgAs : 108 |||!.. ! |||!:!|||||||||:!! ! :!::!! ! ||||||!:!.! laThrArgLysProArgIleLysGluCysIleGluGluValGlnSerAspTrpLysGl 303438 : CCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAGGTGCAAAGTGATTGGAAAGA : 303494 109 : n >>>> Target Intron 1 >>>> ValLysTyrSerLysAspArgGluIleM : 118 . 938 bp |||:!!! ! !!:!|||||||||!!:| u++ ++ValGluSerLeuArgAspArgGluMetM 303495 : Ggt.........................agGTGGAATCTCTCAGAGATCGTGAAATGA : 304462 119 : etValAlaAsnAlaLysPheGlyArgArgLeuValLysIleCysMetPhePheMetTy : 137 ||:!! ! !!!.!:!!.!.||||||!.!|||..!! !|||||| .!.|||||||| etLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTy 304463 : TGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTA : 304519 138 : rSerGlyPheValPheTyrTyrIleAlaLeuProIleArgValGlyArgIleThrVal : 156 |!!!||| !..!.!!|||:!!! !.!:!!! !.!! !..!|||! ! ! ||| rThrGlyGlyThrIleTyrHisThrValMetGlnPheAlaThrGlyThrTyr---Val 304520 : TACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTAT---GTG : 304573 157 : GluGluGlnAsnValThrPheIleProMetValPheProMetThrLysPheMetProA : 176 !!:||| ! ||| !|||.!!! !|||:!:|||!:!|||! !!.. !:!: !| AspGluTyrAsnArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheA 304574 : GATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTG : 304633 177 : spThrArgHisArgProLeuAsnGluIlePhePheSerIleGlnPhePheGlyGlyIl : 195 ||..!!:! !!!|||:!! !!|||:!: !!!:!! !:!!!!.! !.!. !!||| spValGlnThrSerProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTy 304634 : ACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATA : 304690 196 : eValIleHisGlyValAlaAlaAlaThrCysSerLeuValAlaAlaLeuAlaValHis : 214 !||||||:!!..!:!!.!!|||!.!.!!|||.!!|||!.!||| !!!!|||..!||| rValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHis 304691 : CGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACAC : 304747 215 : AlaCysGlyGlnValLysIleLeuLeuArgTrpLeuGluHisLeuIleGluGlyArgP : 234 ||||||||||||:!! ! |||:!!:!! ! ! |||! !!|||:!!.!..!!!:! AlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAspLeuValAsnSerLysG 304748 : GCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAG : 304807 235 : roAspMetSerLysSerValAspLysArgIleAlaGlyIleValSerGlnHisValAr : 253 ! |||.....!:!!|||||||||:!! !! !||||||..!!!.|||:!!|| lu------SerSerAspLeuAspLysArgLeuIleGluIleValGluHisHisLeuAr 304808 : AA------TCATCTGATTTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCG : 304858 254 : gIleLeuLys : 256 |||||||!:! gIleLeuArg 304859 : AATTTTAAGG : 304869 vulgar: Lalb_14632 11 256 . KQ414889.1 303211 304869 + 358 M 19 57 G 2 0 M 76 228 5 0 2 I 0 934 3 0 2 M 46 138 G 1 0 M 79 237 G 2 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303212 304869 358 + . gene_id 13 ; sequence Lalb_14632 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303212 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303212 303496 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304869 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304869 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 303212 304869 358 + . alignment_id 13 ; Query Lalb_14632 ; Align 303212 12 57 ; Align 303269 33 228 ; Align 304435 109 138 ; Align 304573 156 237 ; Align 304810 237 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 334 Query range: 5 -> 265 Target range: 236849 -> 237626 6 : AsnLeuSerIleGlnTrpAsnArgTrpIleLeuArgProMetGlyValTrpProSerS : 25 :!!! !|||:!!||||||||||||||| :!!!:! !!!:|||..!||||||..! AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGln- 236850 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAG- : 236907 26 : erGlyThrAspSerGlyPheGluLysCysSerAsnArgLeuMetAsnLeuValCysTy : 44 !...|||..!.!!|||!:! !! !::!|||:!!:!:|||:!!:!!||||| -----PheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTy 236908 : -----TTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTA : 236958 45 : rSerLeuIleSerPheLeuPheValProCysTrpLeuPheMetMetLeuGluValGlu : 63 |!!! !||| !|||! !.!.:!!||||||! !||| !:!:||||||||| !! ! rThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGly 236959 : CACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGG : 237015 64 : AsnLeuTyrAspLysLeuLysLeuPheGlyProLeuSerPheCysValMetAlaTyrM : 83 !.!!!!||| |||:!!|||:!!.!!||| !!|||||| !!! |||.!...! !! ThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleI 237016 : ACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCA : 237075 84 : etLysTyrTyrSerLeuMetThrHisAlaAsnAspIleArgGluCysIleLysTyrIl : 102 !:!..||| !! !|||:!! !!.. !!!. !||||||.!.! !.!!!!.:!!!! leSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMe 237076 : TCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATAT : 237132 103 : eGluTrpAspTrpArgAsnValLysTyrSerLysAspArgGluIleMetValAlaAsn : 121 :||| |||||||||!....! ...::: :::|||:::|||:!! ! !! tGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyr 237133 : GGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTAC : 237189 122 : AlaLysPheGlyArgArgLeuValLysIleCysMetPhePheMetTyrSerGlyPheV : 141 |||||||||.!!||| ! !!.!! !|||! !.!!|||!!::!!.!!|||.!.: AlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleL 237190 : GCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATAC : 237249 142 : alPheTyrTyrIleAlaLeuProIleArgValGlyArgIleThrValGluGluGlnAs : 160 !! |||! !:!! ! ! !! !! !..! ! !:!!..!|||! !.!.:!!!. euGlyTyrCysValMetThrAlaSerThrThrMetValValValValGlyAsnLysTh 237250 : TTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGAC : 237306 161 : nValThrPheIleProMetValPheProMetThrLysPheMetProAspThrArgHis : 179 !..!! !!!. ! !:!! !!!.|||||| !||| :!:! ! ..! ! rThrIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThr 237307 : TACGATCTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACG : 237363 180 : ArgProLeuAsnGluIlePhePheSerIleGlnPhePheGlyGlyIleValIleHisG : 199 !.! !!:!!|||!!:||| !! !!! ! !||||||.!!..!|||.!!:!! :!!. AsnThrMetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnA 237364 : AATACTATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACA : 237423 200 : lyValAlaAlaAlaThrCysSerLeuValAlaAlaLeuAlaValHisAlaCysGlyGl : 218 .! !||| !::!..! ||||||..!::!||||||.!! !||||||! !||||| snSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGl 237424 : ACAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCA : 237480 219 : nValLysIleLeuLeuArgTrpLeuGluHisLeuIle<->GluGlyArgProAspMet : 236 |:!!!..:!::!!:!! !! !:!!||| !!!!!:!: |||!.!|||! ! ! nLeuSerValValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgGly 237481 : GTTGAGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGG : 237537 237 : SerLysSerValAspLysArgIleAlaGlyIleValSerGlnHisValArgIleLeuL : 256 !.! ! ..! ! ! ! ..!||| !! !||||||..!:!!|||:!!|||:!:|||| LysAspAspHisPheAspGluIleProThrIleValGluGluHisLeuArgValLeuL 237538 : AAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGA : 237597 257 : ysPheLeuSerIleThrGluMetAlaMet : 265 ||! :!!!!!:!: !!!::!! !:!! ys***ValCysLeuLeuAspLeuIleLeu 237598 : AGTAAGTATGTTTGTTGGATTTGATTTTG : 237626 vulgar: Lalb_14632 5 265 . KQ414889.1 236849 237626 + 334 M 19 57 G 2 0 M 204 612 G 0 3 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236850 237626 334 + . gene_id 14 ; sequence Lalb_14632 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236850 237626 . + . KQ414889.1 exonerate:protein2genome:local exon 236850 237626 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236850 237626 334 + . alignment_id 14 ; Query Lalb_14632 ; Align 236850 6 57 ; Align 236907 27 612 ; Align 237522 231 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 318 Query range: 0 -> 256 Target range: 289717 -> 290482 1 : HisArgThrAsnValAsnLeuSerIleGlnTrpAsnArgTrpIleLeuArgProMetG : 20 :!!..!|||:!!:!!..!! !!!!.!!:!!! !!.!|||||||||!:!|||!!:| TyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleLeuLysProIleG 289718 : TACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAG : 289775 21 : lyValTrpPro<->SerSerGlyThrAspSerGlyPheGluLysCysSerAsnArgLe : 38 ||:!!!::||| !! !.!! !! ||| !! !|||::! :!!::: !|| lyMetTyrProPheValPheSerArgAlaSerArgArgGluArgThrAlaSerValLe 289776 : GCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTT : 289832 39 : uMetAsnLeuValCysTyrSerLeuIleSerPheLeuPheValProCysTrpLeuPhe : 57 |:!!! !|||||||||! !|||:!!:!!..!|||:!!.!.||||||! ! ! ! ! ! uLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValProPheSerHisHis 289833 : GCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCAC : 289889 58 : MetMetLeuGluValGluAsnLeuTyrAspLysLeuLysLeuPheGlyProLeuSerP : 77 :!::!:!!!...! !.!.:!!:!! !! :!!||| !.!!|||||||||!!!| ValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuGlyProLeuThrP 289890 : GTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGT : 289949 78 : heCysValMetAlaTyrMetLysTyrTyrSerLeuMetThrHisAlaAsnAspIleAr : 96 |||||:!!! .!!!:!.!.||||||! !! !!!!! ! ! ! !.!:::! ||| ! heCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGlySerAlaIleGl 289950 : TCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGG : 290006 97 : gGluCysIleLysTyrIleGluTrpAspTrpArgAsnValLysTyrSerLysAspArg : 115 !...|||:!:|||:!!|||||| ! ||||||!:!! :!!::: !!..! ! !!||| yArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAspGluAspHisArg 290007 : TCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGT : 290063 116 : GluIleMetValAlaAsnAlaLysPheGlyArgArgLeuValLysIleCysMetPheP : 135 ! ||||||:!! ! !!!.!! !.!..!!|||!.!|||:!!|||:!:||| !.!!| ValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysLeuCysAlaIleP 290064 : GTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCT : 290123 136 : heMetTyrSerGlyPheValPheTyrTyrIleAlaLeuProIleArgValGlyArgIl : 154 ||:!!|||! !||| !:!!! !||| !!! !!.!:!!|||:!: !!..!!:!! heLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeu---PheSerLysLy 290124 : TCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTG---TTCTCGAAGAA : 290177 155 : eThrValGluGluGlnAsnValThrPheIleProMetValPheProMetThrLysPhe : 173 !:!||| .!. |||||||||.!!! !|||:!:..!!:!||| !:!! sSerVal---AsnGlyAsnValThrIleArgProLeuThrTyrProGlyTyrGluGlu 290178 : GAGCGTG---AACGGTAACGTGACTATCAGACCTCTAACTTATCCCGGTTACGAGGAG : 290231 174 : MetProAspThrArgHisArgProLeuAsnGluIlePhePheSerIleGlnPhePheG : 193 .!. !|||..!!:! ! !!!||| ! !!|||||| !!|||!!!!!:!!.! ! !! PhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetHisCysValT 290232 : TTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCT : 290291 194 : lyGlyIleValIleHisGlyValAlaAlaAlaThrCysSerLeuValAlaAlaLeuAl : 212 !! !!!::!!! ..!:!!.!! !|||.!!! !||||||..!.!! !!!!|| yrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePheAl 290292 : ACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGC : 290348 213 : aValHisAlaCysGlyGlnValLysIleLeuLeuArgTrpLeuGluHisLeuIleGlu : 231 |..!|||.!!|||||||||:!!||||||! ! !! ! !!|||||| !!|||! !:!! aThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAspLeuThrLys 290349 : CACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTGACAAAG : 290405 232 : GlyArgProAspMetSerLysSerValAspLysArgIleAlaGlyIleValSerGlnH : 251 !! !! ! :!!..!|||.!!|||..! ! |||:!:|||! !:!!|||||| | ArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValValValSerGlyH 290406 : AGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTGTGAGCGGTC : 290465 252 : isValArgIleLeuLys : 256 |||||..!||||||||| isValGluIleLeuLys 290466 : ACGTGGAGATCTTGAAG : 290482 vulgar: Lalb_14632 0 256 . KQ414889.1 289717 290482 + 318 M 23 69 G 0 3 M 126 378 G 1 0 M 6 18 G 1 0 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289718 290482 318 + . gene_id 15 ; sequence Lalb_14632 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289718 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289718 290482 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289718 290482 318 + . alignment_id 15 ; Query Lalb_14632 ; Align 289718 1 69 ; Align 289790 24 378 ; Align 290168 151 18 ; Align 290186 158 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 221 Query range: 150 -> 256 Target range: 202643 -> 203155 151 : ValGlyArgIleThrValGluGluGlnAsnValThrPheIleProMetValPheProM : 170 ||| !:!! !:!!|||:!!..! !.! ! !:!! !:!!..!||| !!. ValValSerLeuGlyLeuGluLysMetValAlaGluAspLeuSerValThrPheSerP 202644 : gttgtaTCGCTTGGCTTGGAGAAAATGGTAGCAGAGGATCTTAGTGTGACGTTCTCCT : 202701 171 : etThrLysPheMetProAspThrArgHisArgProLeuAsnGluIlePhePheSerIl : 189 !.:!! !|||!!: !|||..!|||:!!!!!|||:!!|||||||||||||||||||| heSerGlyPheIleIleAspValArgTyrSerProValAsnGluIlePhePheSerIl 202702 : TCTCAGGATTTATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGAT : 202758 190 : eGlnPhePheGlyGlyIleValIleHisGlyValAlaAlaAlaThrCysSerLeuVal : 208 |!:!.!! ! !.!! !|||:!!||||||||||||.!!!.!!.!.!!|||!!!|||..! eArgIleValAlaValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThr 202759 : TCGAATCGTAGCTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACA : 202815 209 : AlaAlaLeuAlaValHisAlaCysGlyGlnValLysIleLeuLeuArgTrpLeuGluH : 228 ||| !!!!|||||||||! !|||||||||:!! ! :!!|||:!! !|||||||||| AlaLeuPheAlaValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluH 202816 : GCGTTGTTTGCGGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAAC : 202875 229 : isLeuIleGluGlyArgProAspMetSerLys >>>> Target Intron 1 >>> : 239 |||||!!:!!:|||||| !!|||||||||||| 194 bp isLeuMetAspGlyArgSerAspMetSerLys-+ 202876 : ATTTGATGGATGGTCGTTCGGATATGAGTAAAat........................ : 202910 240 : > SerValAspLysArgIleAlaGlyIleValSerGlnHisValArgIleLeuLys : 256 !:!|||:!! |||!!:!.! !|||||||||||||||:!!|||||||||||| +-AsnValAsnGlyArgMetValThrIleValSerGlnHisIleArgIleLeuLys 202911 : .aaAATGTGAATGGCAGAATGGTGACCATCGTGAGCCAACACATACGGATACTGAAA : 203155 vulgar: Lalb_14632 150 256 . KQ414889.1 202643 203155 + 221 M 88 264 5 0 2 I 0 190 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202644 203155 221 + . gene_id 16 ; sequence Lalb_14632 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 202644 202907 . + . KQ414889.1 exonerate:protein2genome:local exon 202644 202907 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 202908 202909 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 202908 203101 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 203100 203101 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 203102 203155 . + . KQ414889.1 exonerate:protein2genome:local exon 203102 203155 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202644 203155 221 + . alignment_id 16 ; Query Lalb_14632 ; Align 202644 151 264 ; Align 203102 239 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 220 Query range: 276 -> 379 Target range: 301647 -> 302036 277 : ThrLeuAsnLeuCysLeuLeuGlyTyrTyrAlaIleMetGluTrpAspProAsnAspL : 296 ||||||||| ! !!!||| !! ! !.!! !||||||.!. !!:!||| ThrLeuAsnAlaLysPheLeuArgValIle***Phe***GluTrpGlnAsnSerAspT 301648 : ACTTTAAATGCAAAGTTTTTACGAGTAATTTGATTTTAGGAATGGCAAAATAGCGACA : 301705 297 : euThrAlaThrValThrTyrIleThrIleLeuValSerLeuGlyPheAsnIlePheIl : 315 !! !|||! !:!!|||!:!.!!|||:!:|||..!|||!!! !|||||||||||||| hrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAsnIlePheIl 301706 : CGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATATTCAT : 301762 316 : ePheCysTyrIleGlyAspLeuValAlaGluHis >>>> Target Intron 1 > : 327 ||||||||||||||||!!::!!:!!:!!|||!!. 80 bp ePheCysTyrIleGlyGluIleLeuSerGluGln++ 301763 : ATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt...................... : 301800 328 : >>> CysAsnArgValGlyGluValAlaTyrMetIleAspTrpTyrGlnLeuTrpGl : 344 |||!:!!:!:!!|||..!!.!:!!||| !||||||||||||.!.||| !. ++CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAl 301801 : ...agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGC : 301929 345 : yAsnArgLysArgCysLeuIleLeuIleIleAlaMetSerAsnCysSerThrLysLeu : 363 !!!.||| ! ! !|||||||||:!!! !!.!!!:|||.!.! ! !! !!|||||| aLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeu 301930 : GAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTT : 301986 364 : ThrAlaGlyLysMetValGluLeuSerLeuSerThrPheGlyAspVal : 379 ||||||||||||!!::!!!!:|||||||||!:!||||||.!!..!||| ThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301987 : ACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: Lalb_14632 276 379 . KQ414889.1 301647 302036 + 220 M 50 150 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301648 302036 220 + . gene_id 17 ; sequence Lalb_14632 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301648 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301648 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301648 302036 220 + . alignment_id 17 ; Query Lalb_14632 ; Align 301648 277 150 ; Align 301878 327 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 208 Query range: 315 -> 379 Target range: 224466 -> 224658 316 : PheCysTyrIleGlyAspLeuValAlaGluHisCysAsnArgValGlyGluValAlaT : 335 !:! !|||.!! !...||| !! ! ...|||...::::::|||::!|||:!!| TyrHisTyrPheLeuSerLeuPhePheProGlnCysGluLysIleGlyGlnValSerT 224467 : TACCACTATTTTTTATCGCTATTTTTTCCtcagtgtgaaaaaattggacaAGTGTCGT : 224524 336 : yrMetIleAspTrpTyrGlnLeuTrpGlyAsnArgLysArgCysLeuIleLeuIleIl : 354 |||||||||||||||||!:!||| ||||||!:!|||! !|||! !||||||||||| yrMetIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIl 224525 : ACATGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAAT : 224581 355 : eAlaMetSerAsnCysSerThrLysLeuThrAlaGlyLysMetValGluLeuSerLeu : 373 |||||||||||||! !|||! !|||||||||||||||!!.||||||||||||!!!||| eAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeu 224582 : CGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTA : 224638 374 : SerThrPheGlyAspVal : 379 !!!||||||||||||||| ThrThrPheGlyAspVal 224639 : ACCACTTTCGGTGACGTA : 224658 vulgar: Lalb_14632 315 379 . KQ414889.1 224466 224658 + 208 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224467 224658 208 + . gene_id 18 ; sequence Lalb_14632 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224467 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224467 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224467 224658 208 + . alignment_id 18 ; Query Lalb_14632 ; Align 224467 316 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 193 Query range: 289 -> 379 Target range: 291368 -> 292551 290 : GluTrpAspProAsnAspLeuThrAlaThrValThrTyrIleThrIleLeuValSerL : 309 ||||||!!: !!:!|||! !! !!.!! !:!!||||||:!!|||:!!|||..!|||! GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 310 : euGlyPheAsnIlePheIlePheCysTyrIleGlyAspLeuValAlaGluHis >>> : 327 !! !|||||||||.!.||||||||||||:!!|||!!:|||:!! !! !!!. heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln++ 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAGgt... : 291482 328 : > Target Intron 1 >>>> CysAsnArgValGlyGluValAlaTyrMetIleA : 338 913 bp !!!:!..!:!!!.!.!.!.!:!!||| ! !! ++GlySerGluIleAlaHisAlaSerTyrAspThrG 291483 : ......................agGGTAGTGAAATCGCGCACGCTTCCTACGATACAG : 292426 339 : spTrpTyrGlnLeuTrpGlyAsnArgLysArgCysLeuIleLeuIleIleAlaMetSe : 357 !:||||||.!.||| ! !!...!:! ||| !:!!:!!|||:!::!!|||!!:!! luTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIleTh 292427 : AATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAAC : 292483 358 : rAsnCysSerThrLysLeuThrAlaGlyLysMetValGluLeuSerLeuSerThrPhe : 376 !!!. ! !!! !||||||||||||||||||!!: !!! |||||||||!:!|||||| rLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPhe 292484 : GAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTT : 292540 377 : GlyAspVal : 379 |||! !||| GlyAlaVal 292541 : GGCGCTGTA : 292551 vulgar: Lalb_14632 289 379 . KQ414889.1 291368 292551 + 193 M 37 111 5 0 2 I 0 909 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 292551 193 + . gene_id 19 ; sequence Lalb_14632 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292551 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 292551 193 + . alignment_id 19 ; Query Lalb_14632 ; Align 291369 290 111 ; Align 292393 327 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 169 Query range: 6 -> 107 Target range: 200538 -> 200845 7 : LeuSerIleGlnTrpAsnArgTrpIleLeuArgProMetGlyValTrpProSerSerG : 26 :!!!!!||||||||||||||||||||||||!:! !!|||!.!:!!||| !..!!.!. ValCysIleGlnTrpAsnArgTrpIleLeuLysSerMetAlaLeuTrpPheAspLysS 200539 : GTTTGCATACAGTGGAATCGTTGGATCTTGAAATCAATGGCTTTGTGGTTTGACAAAT : 200596 27 : lyThrAspSerGlyPheGluLys-CysSerAsnArgLeuMetAsnLeuValCysTyrS : 45 .!!.! !||| ! !!||||||# !! !!.!||||||!!:!:! !||||||!! . erAsnIleSerProValGluLys#AsnTyrThrArgLeuIleSerAlaValCys***G 200597 : CCAACATTTCACCGGTCGAGAAATAACTACACTCGGCTAATCAGTGCCGTTTGTTAAG : 200654 46 : erLeuIleSerPheLeuPheValProCysTrpLeuPheMetMetLeuGluValGluAs : 64 !!|||!!:...:::......::: ||| ! ||| !:!!.!.|||!!:|||||||| lyLeuMetGlyTyrPheLeuIleLeuCysSerLeuHisValPheLeuAspValGluAs 200655 : GATTGATGggttactttttaatattatgcAGTTTACACGTGTTTCTTGACGTAGAAAA : 200711 65 : nLeuTyrAspLysLeuLysLeuPheGlyProLeu<->SerPheCysValMetAlaTyr : 82 |:!! ! ! |||:!!|||||||||! !|||||| !.!!|||:!! .!! ! nIleLeuLysLysIleLysLeuPheValProLeuValLeuLeuCysLeuAlaThrIle 200712 : TATACTTAAAAAGATTAAATTGTTTGTTCCCCTAGTACTACTTTGCTTGGCTACGATT : 200768 83 : MetLysTyrTyrSerLeuMetThrHisAlaAsnAspIleArgGluCysIleLysTyrI : 102 :!!|||! !:!!! !! !:!: !|||! !:!!|||! ! ! !||| !:!!:!!| LeuLysCysHisLeuSerValLeuHisAspAspAspThrTyrThrCysGlyGluHisI 200769 : TTGAAGTGTCATTTGTCGGTACTTCATGATGACGATACTTACACGTGTGGCGAGCATA : 200828 103 : leGluTrpAspTrpArg : 107 ||:!!|||!!:|||||| leLysTrpGluTrpArg 200829 : TAAAATGGGAGTGGAGG : 200845 vulgar: Lalb_14632 6 107 . KQ414889.1 200538 200845 + 169 M 27 81 F 0 1 M 42 126 G 0 3 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 200539 200845 169 + . gene_id 20 ; sequence Lalb_14632 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 200539 200845 . + . KQ414889.1 exonerate:protein2genome:local exon 200539 200845 . + . insertions 3 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local similarity 200539 200845 169 + . alignment_id 20 ; Query Lalb_14632 ; Align 200539 7 81 ; Align 200621 34 126 ; Align 200750 76 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 326 -> 379 Target range: 280276 -> 280435 327 : CysAsnArgValGlyGluValAlaTyrMetIleAspTrpTyrGlnLeuTrpGlyAsnA : 346 ||| !:!||||||! ! !.!!||||||||||||||||||!::||| |||!!.! CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysL 280277 : TGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGA : 280334 347 : rgLysArgCysLeuIleLeuIleIleAlaMetSerAsnCysSerThrLysLeuThrAl : 365 :! !!:! !!||||||||||||.!!|||:!!||||||! !|||! !||||||||||| ysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 280335 : AAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 280391 366 : aGlyLysMetValGluLeuSerLeuSerThrPheGlyAspVal : 379 |||||||!!::!!!!:||||||||||||!:!||| !!..!||| aGlyLysIleIleAspLeuSerLeuSerSerPheCysSerVal 280392 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTG : 280435 vulgar: Lalb_14632 326 379 . KQ414889.1 280276 280435 + 152 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280277 280435 152 + . gene_id 21 ; sequence Lalb_14632 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280277 280435 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280435 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280277 280435 152 + . alignment_id 21 ; Query Lalb_14632 ; Align 280277 327 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 326 -> 379 Target range: 287063 -> 287222 327 : CysAsnArgValGlyGluValAlaTyrMetIleAspTrpTyrGlnLeuTrpGlyAsnA : 346 ||| !:!|||||| ! !.!!||||||||||||||||||!::||| |||!!.! CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysT 287064 : tGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAA : 287121 347 : rgLysArgCysLeuIleLeuIleIleAlaMetSerAsnCysSerThrLysLeuThrAl : 365 ! !:! !!||||||||||||.!!|||:!!||||||! !|||! !||||||||||| hrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 287122 : CAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 287178 366 : aGlyLysMetValGluLeuSerLeuSerThrPheGlyAspVal : 379 |||||||!!::!!!!:||||||||||||!:!||| !!..!||| aGlyLysIleIleAspLeuSerLeuSerSerPheCysSerVal 287179 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTG : 287222 vulgar: Lalb_14632 326 379 . KQ414889.1 287063 287222 + 148 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287064 287222 148 + . gene_id 22 ; sequence Lalb_14632 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287064 287222 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287222 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287064 287222 148 + . alignment_id 22 ; Query Lalb_14632 ; Align 287064 327 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 325 -> 379 Target range: 238625 -> 238787 326 : HisCysAsnArgValGlyGluValAlaTyrMetIleAspTrpTyrGlnLeuTrpGlyA : 345 !!.||| !:!||||||||||||!.!||||||! !||||||||| ! ||| !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 346 : snArgLysArgCysLeuIleLeuIleIleAlaMetSerAsnCysSerThrLysLeuTh : 364 ..|||! ! ! !||||||||||||||| ! |||||| !..!|||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 365 : rAlaGlyLysMetValGluLeuSerLeuSerThrPheGlyAspVal : 379 ||||||||||:!::!!.!.:!!||||||! !||||||||||||||| rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspVal 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTA : 238787 vulgar: Lalb_14632 325 379 . KQ414889.1 238625 238787 + 144 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238787 144 + . gene_id 23 ; sequence Lalb_14632 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238787 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238787 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238787 144 + . alignment_id 23 ; Query Lalb_14632 ; Align 238626 326 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 325 -> 379 Target range: 244655 -> 244817 326 : HisCysAsnArgValGlyGluValAlaTyrMetIleAspTrpTyrGlnLeuTrpGlyA : 345 !!.||| !:!||||||||||||!.!||||||! !||||||||| ! ||| !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 346 : snArgLysArgCysLeuIleLeuIleIleAlaMetSerAsnCysSerThrLysLeuTh : 364 ..|||! ! ! !||||||||||||||| ! |||||| !..!:!!:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 365 : rAlaGlyLysMetValGluLeuSerLeuSerThrPheGlyAspVal : 379 ||||||||||:!::!!.!.:!!||||||! !||||||||||||||| rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspVal 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTA : 244817 vulgar: Lalb_14632 325 379 . KQ414889.1 244655 244817 + 141 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244817 141 + . gene_id 24 ; sequence Lalb_14632 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244817 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244817 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244817 141 + . alignment_id 24 ; Query Lalb_14632 ; Align 244656 326 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 325 -> 379 Target range: 254271 -> 254433 326 : HisCysAsnArgValGlyGluValAlaTyrMetIleAspTrpTyrGlnLeuTrpGlyA : 345 !!.||| !:!||||||||||||!.!||||||! !||||||||| ! ||| !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 346 : snArgLysArgCysLeuIleLeuIleIleAlaMetSerAsnCysSerThrLysLeuTh : 364 ..|||! ! ! !|||||||||||||||.!! |||||| !..!:!!:!!|| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 365 : rAlaGlyLysMetValGluLeuSerLeuSerThrPheGlyAspVal : 379 ||||||||||::: ...:::||||||! !||||||||||||||| rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspVal 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTA : 254433 vulgar: Lalb_14632 325 379 . KQ414889.1 254271 254433 + 140 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254433 140 + . gene_id 25 ; sequence Lalb_14632 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254433 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254433 140 + . alignment_id 25 ; Query Lalb_14632 ; Align 254272 326 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 324 -> 379 Target range: 277548 -> 277713 325 : GluHisCysAsnArgValGlyGluValAlaTyrMetIleAspTrpTyrGlnLeuTrpG : 344 ..!!!.|||!!.!:!||||||||||||!.!||||||! :!!|||||| ! ||| ! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 345 : lyAsnArgLysArgCysLeuIleLeuIleIleAlaMetSerAsnCysSerThrLysLe : 363 !!!. !! ! ! !|||:!!|||||||||:!!! |||!:! |||:: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 364 : uThrAlaGlyLysMetValGluLeuSerLeuSerThrPheGlyAspVal : 379 :||||||||||||::::::::::::|||:!!! !||||||||||||||| eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspVal 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTA : 277713 vulgar: Lalb_14632 324 379 . KQ414889.1 277548 277713 + 133 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277713 133 + . gene_id 26 ; sequence Lalb_14632 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277549 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277713 133 + . alignment_id 26 ; Query Lalb_14632 ; Align 277549 325 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 323 -> 379 Target range: 234979 -> 235147 324 : AlaGluHisCysAsnArgValGlyGluValAlaTyrMetIleAspTrpTyrGlnLeuT : 343 .!!:!!!!.|||!.!!:!||||||||| !!.!||||||! !!!:||||||!:!||| ThrGlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuP 234980 : ACTCAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTAC : 235037 344 : rpGlyAsnArgLysArgCysLeuIleLeuIleIleAlaMetSerAsnCysSerThrLy : 362 !!!.! ! ! ! !!|||:!!:!!||||||:!!! !|||!:! !! !|| roHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLy 235038 : CTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAA : 235094 363 : sLeuThrAlaGlyLysMetValGluLeuSerLeuSerThrPheGlyAspVal : 379 |:!!||||||||||||.!.:!!:!!:!!|||:!!:!!||||||||||||||| sIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235095 : AATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: Lalb_14632 323 379 . KQ414889.1 234979 235147 + 132 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234980 235147 132 + . gene_id 27 ; sequence Lalb_14632 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234980 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234980 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234980 235147 132 + . alignment_id 27 ; Query Lalb_14632 ; Align 234980 324 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 287 -> 325 Target range: 224317 -> 224431 288 : IleMetGluTrpAspProAsnAspLeuThrAlaThrValThrTyrIleThrIleLeuV : 307 .!!...||||||... ::: !!||||||::!.!!|||||||||.!!! !:!!|||: PheGlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuM 224318 : TTTCaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCA : 224375 308 : alSerLeuGlyPheAsnIlePheIlePheCysTyrIleGlyAspLeuValAlaGlu : 325 !!|||||| ||||||||||||||||||||||||||||||!!:|||||||||||| etSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGlu 224376 : TGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAA : 224431 vulgar: Lalb_14632 287 325 . KQ414889.1 224317 224431 + 130 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224318 224431 130 + . gene_id 28 ; sequence Lalb_14632 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224318 224431 . + . KQ414889.1 exonerate:protein2genome:local exon 224318 224431 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224318 224431 130 + . alignment_id 28 ; Query Lalb_14632 ; Align 224318 288 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 325 -> 379 Target range: 258462 -> 258624 326 : HisCysAsnArgValGlyGluValAlaTyrMetIleAspTrpTyrGlnLeuTrpGlyA : 345 !!.|||!!.!:!||||||!!:|||!.!||||||! !||||||||| ! ||| ! !! GlnCysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspL 258463 : CAGTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACA : 258520 346 : snArgLysArgCysLeuIleLeuIleIleAlaMetSerAsnCysSerThrLysLeuTh : 364 !.|||! !! ! !|||||||||:!!|||||| |||!:! !..!:!!:!!|| ysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleTh 258521 : AAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCAC : 258577 365 : rAlaGlyLysMetValGluLeuSerLeuSerThrPheGlyAspVal : 379 ||||||||||... ...::!|||:!!! !||||||.!!|||||| rAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAspVal 258578 : CGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATGTG : 258624 vulgar: Lalb_14632 325 379 . KQ414889.1 258462 258624 + 130 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258463 258624 130 + . gene_id 29 ; sequence Lalb_14632 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 258463 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258463 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258463 258624 130 + . alignment_id 29 ; Query Lalb_14632 ; Align 258463 326 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 325 -> 379 Target range: 273014 -> 273176 326 : HisCysAsnArgValGlyGluValAlaTyrMetIleAspTrpTyrGlnLeuTrpGlyA : 345 ...|||...::::::|||||||||!.!||||||! :!!|||||| ! ||| |||! GlnCysLysLysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProGlyL 273015 : cagtgtaaaaaaattggcGAGGTAGTTTACATGACGAACTGGTACTATTTACCCGGCA : 273072 346 : snArgLysArgCysLeuIleLeuIleIleAlaMetSerAsnCysSerThrLysLeuTh : 364 !. !! ! ! !|||||||||||||||:!!! !!!!:! ! !! !|||:!!|| ysAspIleLeuAspLeuIleLeuIleIleSerArgCysSerValValIleLysIleTh 273073 : AAGATATCCTCGATCTGATTTTGATCATCTCAAGATGCAGTGTTGTGATTAAAATCAC : 273129 365 : rAlaGlyLysMetValGluLeuSerLeuSerThrPheGlyAspVal : 379 |||||||!:!!!:||| :!!|||:!!! !||||||||||||||| rAlaGlyArgIleValProMetSerValTyrThrPheGlyAspVal 273130 : CGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTCGGCGATGTA : 273176 vulgar: Lalb_14632 325 379 . KQ414889.1 273014 273176 + 130 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 273015 273176 130 + . gene_id 30 ; sequence Lalb_14632 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 273015 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 273015 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 273015 273176 130 + . alignment_id 30 ; Query Lalb_14632 ; Align 273015 326 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 329 -> 379 Target range: 206251 -> 206401 330 : ValGlyGluValAlaTyrMetIleAspTrpTyrGlnLeuTrpGlyAsnArgLysArgC : 349 |||||| !..!:!!! !! !:!::!!||||||!::||| ..!!..!.! !|||! ValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgS 206252 : GTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCT : 206309 350 : ysLeuIleLeuIleIleAlaMetSerAsnCysSerThrLysLeuThrAlaGlyLysMe : 368 !:!!||||||||||||||||||||||||! ! !!! !|||||||||||||||||||| erMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMe 206310 : CTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAAT : 206366 369 : tValGluLeuSerLeuSerThrPheGlyAspVal : 379 | !!|||:!!||||||:!!!:!||| !|||||| tPheGluMetSerLeuAlaSerPheThrAspVal 206367 : GTTCGAAATGTCTTTAGCTAGTTTCACCGATGTA : 206401 vulgar: Lalb_14632 329 379 . KQ414889.1 206251 206401 + 128 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206252 206401 128 + . gene_id 31 ; sequence Lalb_14632 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206252 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206252 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206252 206401 128 + . alignment_id 31 ; Query Lalb_14632 ; Align 206252 330 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 252 -> 289 Target range: 224128 -> 224239 253 : ArgIleLeuLysPheLeuSerIleThrGluMetAlaMetArgGlnIleSerPheValG : 272 !:! !! !!:!||||||!!! !||||||! |||:!!!:!|||:!!|||||||||| LysCysCysArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValG 224129 : AAATGTTGCAGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGG : 224186 273 : luPheThrGlyCysThrLeuAsnLeuCysLeuLeuGlyTyrTyrAlaIleMet : 289 ||||| !||||||! !||||||:!!||||||||||||||||||!.!|||:!! luPheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleVal 224187 : AATTTCTAGGCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTG : 224239 vulgar: Lalb_14632 252 289 . KQ414889.1 224128 224239 + 126 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224129 224239 126 + . gene_id 32 ; sequence Lalb_14632 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224129 224239 . + . KQ414889.1 exonerate:protein2genome:local exon 224129 224239 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224129 224239 126 + . alignment_id 32 ; Query Lalb_14632 ; Align 224129 253 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 327 -> 379 Target range: 305627 -> 305783 328 : AsnArgValGlyGluValAlaTyrMetIleAspTrpTyrGlnLeuTrpGlyAsnArgL : 347 !:!!!!|||||| ! !..!!:!||||||..!||||||!!.||| ! !!!.! !! SerSerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrI 305628 : AGTAGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGA : 305685 348 : ysArgCysLeuIleLeuIleIleAlaMetSerAsnCysSerThrLysLeuThrAlaGl : 366 !!.! !!||||||||||||||||||||||||!:! ! !!.!!|||:!!!:!||||| leHisGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGl 305686 : TACATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGG : 305742 367 : yLysMetValGluLeuSerLeuSerThrPheGlyAspVal : 379 ||||:!:|||!!:|||||||||||||||||||||:!!||| yLysValValAspLeuSerLeuSerThrPheGlyAsnVal 305743 : TAAAGTAGTTGATTTATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: Lalb_14632 327 379 . KQ414889.1 305627 305783 + 124 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305628 305783 124 + . gene_id 33 ; sequence Lalb_14632 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305628 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305628 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305628 305783 124 + . alignment_id 33 ; Query Lalb_14632 ; Align 305628 328 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 325 -> 379 Target range: 264723 -> 264885 326 : HisCysAsnArgValGlyGluValAlaTyrMetIleAspTrpTyrGlnLeuTrpGlyA : 345 !!.|||!!.!:!||||||||||||!.!|||||| :!!|||||| ! ||| !! GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 346 : snArgLysArgCysLeuIleLeuIleIleAlaMetSerAsnCysSerThrLysLeuTh : 364 !. !! ! ! !||||||||||||||| !! |||!:! ! !|||!!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 365 : rAlaGlyLysMetValGluLeuSerLeuSerThrPheGlyAspVal : 379 ||||||||||!!::!!.!.:!!|||:!!! !||||||.!!|||||| rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: Lalb_14632 325 379 . KQ414889.1 264723 264885 + 117 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264885 117 + . gene_id 34 ; sequence Lalb_14632 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264885 117 + . alignment_id 34 ; Query Lalb_14632 ; Align 264724 326 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1207 Query range: 0 -> 372 Target range: 232456 -> 235153 1 : AsnTyrSerValGlnValAsnArgTrpPheLeuLysProIleGlyIleTrpProIleG : 20 .!.||||||:!!|||||||||||||||||||||! !|||!!:||| !|||||| !! GluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgV 232457 : GAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTG : 232514 21 : lyProAspAlaThrArgSerGluArgIlePheSerSerLeuLeuAsnIleAlaCysHi : 39 ! !!!!:.!!:!!|||:!!:!!!:!:!!.!!:!!!.!||||||!..:!!.!!||||| alThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHi 232515 : TTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCA : 232571 40 : sSerLeuValValPheThrPheAlaProCysValMetPheIleLeuPheGluGluThr : 58 |||||||:!!:!!! !:!!.!!!.!||||||:!!:!!|||||||||||||||!!:||| sSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThr 232572 : TTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACG : 232628 59 : SerLeuAspAlaArgIleGlnAlaIleGlyProMetSerHisTrpLeuMetGlyGluL : 78 ||||||!!:! !|||!!::!!:!!||||||||||||||||||!::||||||||||||| SerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluL 232629 : AGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAAT : 232688 79 : euAsnTyrCysCysLeuSerPheArgThrAsnAspIlePheArgCysIleArgHisMe : 97 |||||||||||||||||! ! !:!.!!|||||||||.!! !|||:!:..!!!.:! euAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnVa 232689 : TGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGT : 232745 98 : tLysThrAspTrpLysThrIleGluLysSerSerAspArgGluLeuMetLeuLysAsp : 116 !||| !||||||::!!.!:!!:!!||| !! ! !!|||!!:||||||||||||:!! lLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsn 232746 : GAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAAC : 232802 117 : AlaLysValGlyArgSerIleAlaThrIleAlaAlaValCysMetAsnLeuGlyValP : 136 ||||||:!!||||||||||||||| !||||||||| !!||||||:!! !|||||| AlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValG 232803 : GCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCG : 232862 137 : heSerTyrAsnPheValThrGlyPheGlnLysLeuGluPheHisValGlyAsnAspTh : 155 !||| !!.!..!.|||||||||.!!!::! ! ! !|||:!!|||||||||!!:!: lySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSe 232863 : GCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAG : 232919 156 : rTyrSerMetLeuArgLeuProCysProPheTyrSerAsnLeuMetAspValArgHis : 174 !|||||||||! !! !||||||||| !!||||||!!!!!.|||||||||..!||| ! rTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPhe 232920 : TTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTC : 232976 175 : SerProAlaAsnGluIleValTyrPheLeuGlnLeuLeuSerGlyLeuIleValAsnS : 194 ||||||.!!|||||||||:!!!:! !!||||||! !|||||||||!!!|||||||||| SerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnS 232977 : AGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACT : 233036 195 : erValThrValGlyAlaCysGlyMetAlaGlyValPheAlaMetHisAlaCysGlyGl : 213 |||||||||||||||||||||||:!:!.!!.!|||.!.|||||||||||||||||||| erValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGl 233037 : CCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACA : 233093 214 : nLeuAsnValIleThrSerGlnLeuAsnAsnLeuVal<->ThrProAsnGluGluGln : 231 ||||||||||:!:! !|||:!!|||:!!:!!|||||| .!! !...:!!|||:!! nLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGlyGlnGluGlu 233094 : GCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAGGAGGAG : 233150 232 : ThrPheAlaLysLysLysLeuThrSerIleValGluArgHisLeuArgThrLeu{As} : 250 ! ! !!|||:!!!:!|||||| !! !|||||||||!.!|||||||||||||||{!:} ArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeu{Se} 233151 : AGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTA{AG} : 233207 251 : >>>> Target Intron 1 >>>> {n}PheValTrpTyrIleGluLysIleMe : 259 1315 bp {!}|||:!! !! !!||||||!!.:!!|| ++ ++{r}PheIleArgAsnIleGluAsnValMe 233208 : gt.........................ag{T}TTTATACGGAATATAGAGAACGTTAT : 234549 260 : tHisMetIleCysLeuValGluLeuMetGlyCysThrLeuAsnIleCysMetLeuGlu : 278 |:!!:!:||||||||||||||||||:!:|||||||||||||||!!:|||||||||||| tAsnLeuIleCysLeuValGluLeuValGlyCysThrLeuAsnMetCysMetLeuGlu 234550 : GAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACGTTGAACATGTGCATGCTCGAG : 234606 279 : TyrTyrMetLeuThr >>>> Target Intron 2 >>>> GluAspSerThrGl : 288 ||||||:!:|||||| 189 bp ||| ! ||| || TyrTyrLeuLeuThr++ ++GluLysSerLysGl 234607 : TATTATTTACTCACGgt.........................agGAAAAgtcgaagga : 234825 289 : uArgMetAlaThrTyrAlaIleLeuTyrValSerMetIlePheAsnIlePheIlePhe : 307 |::::::|||:!!|||!.!|||:!!||||||||||||! !|||||||||||||||||| uLysLeuAlaSerTyrValIleValTyrValSerMetThrPheAsnIlePheIlePhe 234826 : aaaattagCTTCATACGTCATCGTGTACGTGTCCATGACATTtaatatattcatattt : 234882 308 : CysTyrIleGlyGluLysLeuThrThrGln >>>> Target Intron 3 >>>> : 318 |||||||||||||||! !|||||| !||| 74 bp CysTyrIleGlyGluThrLeuThrGluGln++ + 234883 : tgttACATCGGAGAGACGCTTACAGAGCAGgt.........................a : 234987 319 : CysLeuGlnValGlyGluLysAlaTyrMetThrGlnTrpTyrArgLeuProHisLys : 336 ||| !:!!||||||||||||!.!|||||||||:!!||||||||||||||||||||| +CysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProHisLys 234988 : gTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATAAA : 235043 337 : ThrAlaThrGlyLeuIleLeuLeuIleSerArgSerArgMetValThrArgIleThrA : 356 |||||| !||||||:!!:!!:!!||||||||||||!!!||||||! !!:!||||||| ThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrA 235044 : ACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCACCG : 235103 357 : laGlyLysLeuLeuProIleSerIleSerThrPheGlyAspValSerIle : 372 ||||||||!!!|||! !!!:|||:!!:!!||||||||||||||||||||| laGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspValSerIle 235104 : CTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTGAGTATT : 235153 vulgar: Lalb_14627 0 372 . KQ414889.1 232456 235153 + 1207 M 225 675 G 0 3 M 24 72 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 33 99 5 0 2 I 0 185 3 0 2 M 34 102 5 0 2 I 0 70 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232457 235153 1207 + . gene_id 1 ; sequence Lalb_14627 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232457 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232457 233208 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235153 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235153 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232457 235153 1207 + . alignment_id 1 ; Query Lalb_14627 ; Align 232457 1 675 ; Align 233135 226 72 ; Align 234525 251 99 ; Align 234813 284 102 ; Align 234989 318 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 664 Query range: 0 -> 372 Target range: 208209 -> 211938 1 : AsnTyrSerValGlnValAsnArgTrpPheLeuLysProIleGlyIleTrpProIleG : 20 !:!!:!!:!|||!:::!!||| !||| |||||| !|||||| !||||||! !. SerPheAsnValArgLeuAsnValTrpThrLeuLysIleIleGlySerTrpProArgS 208210 : AGCTTCAACGTTCGTCTGAACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGAT : 208267 21 : lyProAspAlaThrArgSerGluArgIlePheSerSerLeuLeuAsnIleAlaCysHi : 39 .! !||| !:!! !!! !|||!.!! ! !! !|||||||||:!! ! !!|| erIleAspArgSerTrpLeuGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHi 208268 : CTATAGATCGTTCCTGGTTAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCA : 208324 40 : sSerLeuValValPheThrPheAlaProCysValMetPheIleLeuPheGluGluThr : 58 |!!!|||:!!! !|||! ! ! !||| !! !|||||| :!!.!!! !! ! sCysLeuLeuGlyPheIleValIleProThrGlyMetPheAlaIleLeuValValGlu 208325 : CTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAG : 208381 59 : SerLeuAspAlaArgIleGlnAlaIleGlyProMetSerHisTrpLeuMetGlyGluL : 78 ..!!!! !!! !!:!:!!:!! ! !.!! !!:!!||| !!:::!!|||!.! AspPheTyrAspGlnLeuLysIleCysSerAlaLeuSerPhePheMetMetAlaPheT 208382 : GATTTTTACGACCAATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCA : 208441 79 : euAsnTyrCysCysLeuSerPheArgThrAsnAspIlePheArgCysIleArgHisMe : 97 !!!.||| !:!!!!! !!||| !..!|||||| !:!|||:!!..!:!!:! hrLysTyrValIleMetThrValArgGluGlyAspIleArgLysCysValGluTyrVa 208442 : CGAAGTACGTGATCATGACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGT : 208498 98 : tLysThrAspTrpLysThrIleGluLysSerSerAspArgGluLeuMetLeuLysAsp : 116 ::!!.!!||||||!:!!.!:!:||| ! ..!..!||||||:!!:!!|||||| ! :!! lGluAlaAspTrpArgAsnValGluHisGluGluAspArgLysIleMetLeuAspAsn 208499 : CGAGGCTGATTGGAGAAACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAAC : 208555 117 : AlaLysValGlyArgSerIleAlaThrIleAlaAlaValCysMetAsnLeuGlyValP : 136 |||!.. !!!.!|||!.!:!: !..!|||..!!.!!.!! !||| !! !||||||. AlaSerPheAlaArgLysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyValI 208556 : GCGAGTTTCGCCAGGAAACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaa : 208615 137 : heSerTyrAsnPheValThrGlyPheGlnLysLeuGluPheHisValGlyAsnAspTh : 155 .. ||| .!!!.! ! !.!! ::! !:!! !! !! !! !..!! !!. lePheTyrTyrIleAlaLeuProLeuThrArgAspLysValValGluGluGlyGlyAs 208616 : ttttctattacaTCGCTTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAA : 208672 156 : rTyrSerMetLeuArgLeuProCysProPheTyrSerAsnLeuMetAspValArgHis : 174 !! !!! !|||||| !! !||| !! !!.! !:!!:!!|||||||||:!! nLeuThrTyrArgArgLeuValTyrProValProLysPheIleLeuAspValArgTyr 208673 : TTTGACGTACAGAAGGCTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATAC : 208729 175 : SerProAlaAsnGluIleValTyrPheLeuGlnLeuLeuSerGlyLeuIleValAsnS : 194 ||||||!.!||||||||| !!||| :!!|||||||||||||||!!!:!!!.!:!!! SerProValAsnGluIlePheTyrThrValGlnLeuLeuSerGlyPheValAlaHisA 208730 : AGTCCTGTGAATGAGATTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATA : 208789 195 : erValThrValGlyAlaCysGlyMetAlaGlyValPheAlaMetHisAlaCysGlyGl : 213 :!:!!||||||||||||||||||:!!|||!.!:!!.!!|||||||||||||||||||| snIleThrValGlyAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGl 208790 : ATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACA : 208846 214 : nLeuAsnValIleThrSerGlnLeuAsnAsnLeuValThrProAsnGlu<->GluGln : 231 ||||.!.:!!:!:! !||| !:!!.!.!!.|||||| ! !...||| |||:!! nLeuGlnIleLeuMetSerTrpMetGluLysLeuValAspGlyArgGluAspGluGlu 208847 : GCTGCAGATTTTGATGTCCTGGATGGAGAAGTTGGTCGATGGACGGGAGGACGAGGAG : 208903 232 : ThrPheAlaLysLysLysLeuThrSerIleValGluArgHisLeuArgThrLeu{As} : 250 ! ! ! ! ! :!!!:!|||.!!!:!|||||||||!:!|||:!!|||..!:!!{||} LysAsnLeuAspGlnArgLeuAlaAsnIleValGluGlnHisValArgValIle{As} 208904 : AAGAATTTGGATCAGAGGTTGGCTAATATCGTGGAGCAGCATGTTCGAGTGATC{AA} : 208960 251 : >>>> Target Intron 1 >>>> {n}PheValTrpTyrIleGluLysIleMe : 259 1536 bp {|}|||:!! ! !|||!!.:!!:! ++ ++{n}PheIleAlaLeuThrGluAsnLeuLe 208961 : gt.........................ag{T}TTTATAGCTCTGACAGAGAACCTCCT : 210523 260 : tHisMetIleCysLeuValGluLeuMetGlyCysThrLeuAsnIleCysMetLeuGlu : 278 !||| !|||! |||:!!|||:!!:!!|||||||||||||||!!:|||.!.|||! uHisGluIleSerLeuIleGluMetValGlyCysThrLeuAsnMetCysPheLeuGly 210524 : GCACGAGATATCATTGATAGAAATGGTGGGGTGCACTCTGAACATGTGTTTCCTTGGC : 210580 279 : TyrTyrMetLeuThr >>>> Target Intron 2 >>>> Glu<->AspSerTh : 287 ||||||! !:!!! ! 66 bp ||| ||||||! TyrTyrThrMetIle++ ++GluTrpAspSerLy 210581 : TATTACACGATGATTgt.........................agGAATGGGACTCTAA : 210676 288 : rGluArgMetAla<-><->ThrTyrAlaIleLeuTyrValSerMetIlePheAsnIle : 304 !!!:! !!!:::! |||||| !:!!||| !..!|||:!:! ||||||||| sAspProIleSerSerLeuThrTyrIleValLeuLeuThrSerValThrPheAsnIle 210677 : AGACCCTATCAGCAGTCTGACGTACATAGTACTCCTCACTTCTGTCACGTTTAACATC : 210733 305 : PheIlePheCysTyrIleGlyGluLysLeuThrThrGln >>>> Target Intro : 318 |||||||||||||||||||||||| !|||.!! !||| 999 bp PheIlePheCysTyrIleGlyGluValLeuAlaGluGln++ 210734 : TTCATATTCTGTTACATCGGTGAAGTGTTGGCTGAACAggt................. : 210777 319 : n 3 >>>> CysLeuGlnValGlyGluLysAlaTyrMetThrGlnTrpTyrArgLeu : 333 :!!:!!||||||||||||:!!||||||! !.!.|||||||||:!! ++ThrValLysValGlyGluLysSerTyrMetIleAspTrpTyrArgMet 210778 : ........agACAGTAAAAGTTGGAGAAAAGTCTTACATGATCGACTGGTATCGAATG : 211819 334 : ProHisLysThrAlaThrGlyLeuIleLeuLeuIleSerArgSerArgMetValThrA : 353 ||| |||! !!.! !! !:!! !|||:!!||||||! !|||!.! !..!|||! ProGlyLysLysGlyLeuValValProLeuMetIleSerMetSerHisSerThrThrL 211820 : CCAGGAAAGAAAGGTTTGGTCGTACCCTTGATGATCTCCATGTCACATTCGACCACCA : 211879 354 : rgIleThrAlaGlyLysLeuLeuProIleSerIleSerThrPheGlyAspValSerIl : 372 :!||||||||||||!!.|||:!! !:!!|||||||||!:!|||||||||||||||:: ysIleThrAlaGlyAsnLeuIleValLeuSerIleSerSerPheGlyAspValSerVa 211880 : AAATCACCGCTGGCAATCTCATCGTTCTTTCAATCAGTAGTTTCGGTGACGTAAGtgt : 211936 373 : e : 372 : l 211937 : t : 211938 vulgar: Lalb_14627 0 372 . KQ414889.1 208209 211938 + 664 M 229 687 G 0 3 M 20 60 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 1 3 G 0 3 M 7 21 G 0 6 M 26 78 5 0 2 I 0 995 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208210 211938 664 + . gene_id 2 ; sequence Lalb_14627 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208210 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208210 208961 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211938 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211938 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208210 211938 664 + . alignment_id 2 ; Query Lalb_14627 ; Align 208210 1 687 ; Align 208900 230 60 ; Align 210499 251 99 ; Align 210664 284 3 ; Align 210670 285 21 ; Align 210697 292 78 ; Align 211774 318 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 534 Query range: 0 -> 283 Target range: 262846 -> 263773 1 : AsnTyrSerValGlnValAsnArgTrpPheLeuLysProIleGlyIleTrpProIleG : 20 :!!||||||:!!|||:!!|||||||||.!.||||||||||||||| !||||||:!:. AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 21 : lyProAspAlaThrArgSerGluArgIlePheSerSerLeuLeuAsnIleAlaCysHi : 39 .! !!... !:!!|||! !|||||||||.!!!!!! !||||||! !:!!!.!|||:! erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 40 : sSerLeuValValPheThrPheAlaProCysValMetPheIleLeuPheGluGluThr : 58 !!!!|||:!!:!!! !||| !! !|||! !:!!:!: !|||:!!.!.|||! ! rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 59 : SerLeuAspAlaArgIleGlnAlaIleGlyProMetSerHisTrpLeuMetGlyGluL : 78 !:!!!! !! !!:!:!:|||!.!:!!||||||:!:.!!!!.|||!!!:!:||| !: AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 79 : euAsnTyrCysCysLeuSerPheArgThrAsnAspIlePheArgCysIleArgHisMe : 97 !!|||||| !!! |||! !.!!!.!!:!!!.|||||| !!|||:!:!:!|||:! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 98 : tLysThrAspTrpLysThrIleGluLysSerSerAspArgGluLeuMetLeuLysAsp : 116 !:!! !|||||| ! !:!: !:!! !..!|||!:!...:!!|||||||||:!! lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 117 : AlaLysValGlyArgSerIleAlaThrIleAlaAlaValCysMetAsnLeuGlyValP : 136 |||||| !||||||! !:!:|||.!! !..!|||:!!! !|||.!. !.!!:!!. AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 137 : heSerTyrAsnPheValThrGlyPheGlnLysLeuGluPheHisValGlyAsnAspTh : 155 !.!!! ! !.!.||||||!.!||| ! !! !! !.!!.!.! !||||||!!:|| etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 156 : rTyrSerMetLeuArgLeuProCysProPheTyrSerAsnLeuMetAspValArgHis : 174 | ! !:!:! !! !|||||||||||| ! |||!.!.!.:!!!!: ||| ! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 175 : SerProAlaAsnGluIleValTyrPheLeuGlnLeuLeuSerGlyLeuIleValAsnS : 194 !:!|||.!!||||||||| !! ! ! !|||!!!|||||||||!!!||||||!.!: AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 195 : erValThrValGlyAlaCysGlyMetAlaGlyValPheAlaMetHisAlaCysGlyGl : 213 !!..!||||||||||||! !||||||.!!!.!||||||||| |||||||||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 214 : nLeuAsnValIleThrSerGlnLeuAsnAsnLeuVal<-><->ThrProAsnGluGlu : 230 ||||||||||:!:! !||| !:!!!...!.!!!||| :!! !:!!|||.!. nLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsn 263484 : GTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAAT : 263540 231 : GlnThrPheAlaLysLysLysLeuThrSerIleValGluArgHisLeuArgThrLeu- : 250 :!!!.!.!! ! ! :!!:!! ! !|||||||||!.!|||||||||..!|||# LysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeu# 263541 : AAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTGA : 263600 251 : ----AsnPheValTrpTyr{Il} >>>> Target Intron 1 >>>> {e}Glu : 256 ####!..||||||||||||{! } 67 bp {!}:!! ####ArgPheValTrpTyr{Th}-+ +-{r}Lys 263601 : GGTAAGATTTGTTTGGTAC{AC}tt.........................at{T}AAG : 263690 257 : LysIleMetHisMetIleCysLeuValGluLeuMetGlyCysThrLeuAsnIleCysM : 276 !!.:!:||| !! !||||||!!!|||||||||.!. !..!||||||:!!||||||| AsnValMetSerThrIleCysPheValGluLeuPheLysAlaThrLeuAspIleCysM 263691 : AATGTGATGAGTACGATATGTTTCGTGGAGTTATTCAAGGCTACGCTGGATATATGCA : 263750 277 : etLeuGluTyrTyrMetLeuThr : 283 |||||! ||||||!!:|||||| etLeuGlyTyrTyrIleLeuThr 263751 : TGCTAGGTTACTACATACTTACG : 263773 vulgar: Lalb_14627 0 283 . KQ414889.1 262846 263773 + 534 M 225 675 G 0 6 M 24 72 F 0 5 M 5 15 S 0 2 5 0 2 I 0 63 3 0 2 S 1 1 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 263773 534 + . gene_id 3 ; sequence Lalb_14627 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262847 263621 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263621 . + . insertions 6 ; deletions 0 ; frameshifts 5 KQ414889.1 exonerate:protein2genome:local splice5 263622 263623 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 263622 263688 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263687 263688 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 263689 263773 . + . KQ414889.1 exonerate:protein2genome:local exon 263689 263773 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262847 263773 534 + . alignment_id 3 ; Query Lalb_14627 ; Align 262847 1 675 ; Align 263528 226 72 ; Align 263605 250 15 ; Align 263690 256 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 529 Query range: 0 -> 249 Target range: 266634 -> 267387 1 : AsnTyrSerValGlnValAsnArgTrpPheLeuLysProIleGlyIleTrpProIleG : 20 :!!||||||:!!|||:!!||||||||||||||||||||||||||| !|||||| AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProL 266635 : GATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGT : 266692 21 : lyProAspAlaThrArgSerGluArgIlePheSerSerLeuLeuAsnIleAlaCysHi : 39 ! !! !.!!:!!!:! !||||||||| !!|||! ! !|||! !:!! !|||:! euSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266693 : TGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 40 : sSerLeuValValPheThrPheAlaProCysValMetPheIleLeuPheGluGluThr : 58 !!!!! !:!!:!!|||||| ! !||||||:!!.!. !:!!:!!.!.|||!!: ! rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 59 : SerLeuAspAlaArgIleGlnAlaIleGlyProMetSerHisTrpLeuMetGlyGluL : 78 |||:!! !.!!!:!:!::!!!.!.!!||||||:!!|||||||||!!!:!:|||! !: SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 79 : euAsnTyrCysCysLeuSerPheArgThrAsnAspIlePheArgCysIleArgHisMe : 97 !!|||||| ! |||! !.!.|||!:!!!.!!:||| ! !!|||:!!..!||||| leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 98 : tLysThrAspTrpLysThrIleGluLysSerSerAspArgGluLeuMetLeuLysAsp : 116 |:!!|||||||||!:!! !:!: !:! !!..!|||!:!:!!:!!|||||||||:!! tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 117 : AlaLysValGlyArgSerIleAlaThrIleAlaAlaValCysMetAsnLeuGlyValP : 136 |||!:!:!!||||||! !||||||! !.!!..!|||!.!! !|||.!.! !||||||. AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 137 : heSerTyrAsnPheValThrGlyPheGlnLysLeuGluPheHisValGlyAsnAspTh : 155 !!.!!||| ! ! :!!|||!.!||| ! !! ! ! .!.|||||||||!!:|| euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 156 : rTyrSerMetLeuArgLeuProCysProPheTyrSerAsnLeuMetAspValArgHis : 174 | ! !:!:! !! !||||||||| !! !!|||!.!!!.:!!!!:! ||| ! ! rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 175 : SerProAlaAsnGluIleValTyrPheLeuGlnLeuLeuSerGlyLeuIleValAsnS : 194 ||||||.!!|||||||||||| ! !!! !|||!!!:!!||||||!!!|||||||||| SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 195 : erValThrValGlyAlaCysGlyMetAlaGlyValPheAlaMetHisAlaCysGlyGl : 213 || !..!|||||||||! !.!!:!:|||!.!||||||||| |||||||||||||| erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 214 : nLeuAsnValIleThrSerGlnLeuAsnAsnLeuValThrProAsnGluGlu<-><-> : 231 ||||!:!|||:!:! !! ! !:!!!!..!.!!!|||!.!! !::!..!!!: nLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsn 267272 : GCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAAT : 267328 232 : GlnThrPheAlaLysLysLysLeuThrSerIleValGluArgHisLeuArgThrLeu : 249 :!!!.! !!..! ! |||:!! ! !:!!||||||!.!|||||||||..!||| LysAsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu 267329 : AAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG : 267387 vulgar: Lalb_14627 0 249 . KQ414889.1 266634 267387 + 529 M 230 690 G 0 6 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266635 267387 529 + . gene_id 4 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266635 267387 . + . KQ414889.1 exonerate:protein2genome:local exon 266635 267387 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266635 267387 529 + . alignment_id 4 ; Query Lalb_14627 ; Align 266635 1 690 ; Align 267331 231 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 518 Query range: 0 -> 231 Target range: 274380 -> 275073 1 : AsnTyrSerValGlnValAsnArgTrpPheLeuLysProIleGlyIleTrpProIleG : 20 :!!||||||:!!|||:!!||||||||||||||||||||||||||| ||||||:!!! AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuA 274381 : GACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAG : 274438 21 : lyProAspAlaThrArgSerGluArgIlePheSerSerLeuLeuAsnIleAlaCysHi : 39 .! !! !.!!|||!:!! !|||||||||.!!||| !|||||| ... |||:! laSerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTy 274439 : CCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctA : 274495 40 : sSerLeuValValPheThrPheAlaProCysValMetPheIleLeuPheGluGluThr : 58 !!!!!!!:!!:!!! !||| !! !||| !!:!!.!. !|||:!!.!.! !!!: ! rCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGlu 274496 : CTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAA : 274552 59 : SerLeuAspAlaArgIleGlnAlaIleGlyProMetSerHisTrpLeuMetGlyGluL : 78 |||||| !! !!:!:!::!! !:!!||||||:!:.!!||||||!!!!!:|||! !: SerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyI 274553 : AGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAA : 274612 79 : euAsnTyrCysCysLeuSerPheArgThrAsnAspIlePheArgCysIleArgHisMe : 97 !!|||||| ! |||! !.!.|||!:!!!.!!:||| ! !!|||:!:..!||||| leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 274613 : TTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACAT : 274669 98 : tLysThrAspTrpLysThrIleGluLysSerSerAspArgGluLeuMetLeuLysAsp : 116 |:!!|||||||||!:!! !:!: !:! !!..!|||!:!:!!:!!|||||||||:!! tGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsn 274670 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAAC : 274726 117 : AlaLysValGlyArgSerIleAlaThrIleAlaAlaValCysMetAsnLeuGlyValP : 136 ||||||:!!||||||! !:!!|||! !.!!..!|||!.!! !|||.!.! !||||||. AlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 274727 : GCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTC : 274786 137 : heSerTyrAsnPheValThrGlyPheGlnLysLeuGluPheHisValGlyAsnAspTh : 155 !!!!!||| ! ! :!!|||!.!||| ! !! ! !!!!.|||||||||!!:|| euCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluTh 274787 : TCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGAC : 274843 156 : rTyrSerMetLeuArgLeuProCysProPheTyrSerAsnLeuMetAspValArgHis : 174 | !!!:!!! !! !||||||||| ! !|||!.!!!.:!!:!:! ||| ! rArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThr 274844 : CAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACG : 274900 175 : SerProAlaAsnGluIleValTyrPheLeuGlnLeuLeuSerGlyLeuIleValAsnS : 194 ||||||.!!|||||||||||| ! !! !|||!!!:!!||||||!!!|||||||||| SerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnS 274901 : AGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATT : 274960 195 : erValThrValGlyAlaCysGlyMetAlaGlyValPheAlaMetHisAlaCysGlyGl : 213 || !.!!|||||||||! !.!!:!:|||!.!||||||||| ||||||! !||||| erSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGl 274961 : CGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCA : 275017 214 : nLeuAsnValIleThrSerGlnLeuAsnAsnLeuValThrProAsnGluGluGln : 231 ||||!:!|||:!:! !! ! !:!!!.!.!.!!!|||!.!! !::!..!!!:||| nLeuSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGln 275018 : GTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcag : 275073 vulgar: Lalb_14627 0 231 . KQ414889.1 274380 275073 + 518 M 231 693 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274381 275073 518 + . gene_id 5 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274381 275073 . + . KQ414889.1 exonerate:protein2genome:local exon 274381 275073 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274381 275073 518 + . alignment_id 5 ; Query Lalb_14627 ; Align 274381 1 693 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 517 Query range: 0 -> 249 Target range: 256649 -> 257402 1 : AsnTyrSerValGlnValAsnArgTrpPheLeuLysProIleGlyIleTrpProIleG : 20 :!!||||||:!!|||:!!||||||||||||||||||||||||||| !|||||| !. AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS 256650 : GATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCT : 256707 21 : lyProAspAlaThrArgSerGluArgIlePheSerSerLeuLeuAsnIleAlaCysHi : 39 .! !!..!.!!|||! ! !||||||! ! !!|||! !:!!|||||||||!.!|||:! erSerSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTy 256708 : CGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTA : 256764 40 : sSerLeuValValPheThrPheAlaProCysValMetPheIleLeuPheGluGluThr : 58 !.!!! !:!!:!!||||||!!. !||||||:!!:!: !:!!!!!.!!!!:!!: ! rGlySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAsp 256765 : TGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGAC : 256821 59 : SerLeuAspAlaArgIleGlnAlaIleGlyProMetSerHisTrpLeuMetGlyGluL : 78 |||!!! ! ::::::::: ...||||||||||||||||||:!!!!:.!! SerPheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysA 256822 : AGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTG : 256881 79 : euAsnTyrCysCysLeuSerPheArgThrAsnAspIlePheArgCysIleArgHisMe : 97 !|||||| ! |||! !!!.!:! !!!.|||||| ! !|||:!!..!|||!! laAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIl 256882 : CCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATAT : 256938 98 : tLysThrAspTrpLysThrIleGluLysSerSerAspArgGluLeuMetLeuLysAsp : 116 ::!!|||||||||!:!! !:!:..!!:!..!!.!|||!:!:!!:!!|||:!!|||:!! eGluThrAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsn 256939 : AGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAAC : 256995 117 : AlaLysValGlyArgSerIleAlaThrIleAlaAlaValCysMetAsnLeuGlyValP : 136 |||!:! !!||||||! !:!:||||||.!!..!|||!.! !|||.!. !||||||| AlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValP 256996 : GCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttt : 257055 137 : heSerTyrAsnPheValThrGlyPheGlnLysLeuGluPheHisValGlyAsnAspTh : 155 || ::: !:!!!.!.!..!.! ! ! !.!!||||||||||||!!:|| heCysPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluTh 257056 : tctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAAC : 257112 156 : rTyrSerMetLeuArgLeuProCysProPheTyrSerAsnLeuMetAspValArgHis : 174 | ! !:!!! ! !|||||| ! !! ! |||!.!!!.|||:!!:!!||| !!!. rThrIleValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGln 257113 : AACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAG : 257169 175 : SerProAlaAsnGluIleValTyrPheLeuGlnLeuLeuSerGlyLeuIleValAsnS : 194 ||||||.!!|||||||||||| !|||:!!||| !! !|||..!:!!|||!.!!.!! SerProThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrT 257170 : AGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTA : 257229 195 : erValThrValGlyAlaCysGlyMetAlaGlyValPheAlaMetHisAlaCysGlyGl : 213 !! !||||||.!! !! !.!!:!:|||!.!|||||||||! ||||||! !||||| hrSerThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGl 257230 : CTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCA : 257286 214 : nLeuAsnValIleThrSerGlnLeuAsnAsnLeuVal<-><->ThrProAsnGluGlu : 230 ||||!.!|||:!!! !||| !:!!!...!.!!!||| :!! !|||...||| nLeuThrValLeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGlu 257287 : GTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggag : 257343 231 : GlnThrPheAlaLysLysLysLeuThrSerIleValGluArgHisLeuArgThrLeu : 249 :::|||||| |||:!!:!! ! !|||||||||!.!|||||||||..!||| LysThrPheProPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu 257344 : aaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG : 257402 vulgar: Lalb_14627 0 249 . KQ414889.1 256649 257402 + 517 M 225 675 G 0 6 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256650 257402 517 + . gene_id 6 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256650 257402 . + . KQ414889.1 exonerate:protein2genome:local exon 256650 257402 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256650 257402 517 + . alignment_id 6 ; Query Lalb_14627 ; Align 256650 1 675 ; Align 257331 226 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 516 Query range: 0 -> 249 Target range: 259769 -> 260522 1 : AsnTyrSerValGlnValAsnArgTrpPheLeuLysProIleGlyIleTrpProIleG : 20 :!!||||||:!!||| !!||||||||||||||||||||||||||| !|||||| !. AspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS 259770 : GACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTT : 259827 21 : lyProAspAlaThrArgSerGluArgIlePheSerSerLeuLeuAsnIleAlaCysHi : 39 .! !!..!.!!|||||| !|||!:!|||.!!||| !:!!|||! !.!! !|||:! erSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTy 259828 : CATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTA : 259884 40 : sSerLeuValValPheThrPheAlaProCysValMetPheIleLeuPheGluGluThr : 58 !||| !:!!:!! !!|||.!. !|||||||||:!: !!!:|||.!!|||:!! ! rSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGlu 259885 : CAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAG : 259941 59 : SerLeuAspAlaArgIleGlnAlaIleGlyProMetSerHisTrpLeuMetGlyGluL : 78 |||||| !! !!:!! :!!!.!:!!||||||:!:!!!||||||!!!:!:||| : SerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysI 259942 : AGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTA : 260001 79 : euAsnTyrCysCysLeuSerPheArgThrAsnAspIlePheArgCysIleArgHisMe : 97 !!|||||| |||! !!!.||| !!..||||||.!!!!!|||:!:..!|||:! leAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisVa 260002 : TTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGT : 260058 98 : tLysThrAspTrpLysThrIleGluLysSerSerAspArgGluLeuMetLeuLysAsp : 116 !:!!!.!||||||!:!! !||| !!:!..!!.!|||!:!.!.:!!||||||!:! !! lGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyr 260059 : GGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATAC : 260115 117 : AlaLysValGlyArgSerIleAlaThrIleAlaAlaValCysMetAsnLeuGlyValP : 136 |||||| !!||||||! !:!!|||.!! !..!|||!.!! !:!!.!. !||||||. AlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValL 260116 : GCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTC : 260175 137 : heSerTyrAsnPheValThrGlyPheGlnLysLeuGluPheHisValGlyAsnAspTh : 155 !.!!!!:! !!!.||||||! !!!....! ! !! !.!.!!.|||||||||!!:|| euCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluTh 260176 : TGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGAC : 260232 156 : rTyrSerMetLeuArgLeuProCysProPheTyrSerAsnLeuMetAspValArgHis : 174 | ! !:!:! !! !||||||||| !! ! |||!.!.!.|||!!::!!|||!.! !! rArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAsp 260233 : GAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGAC : 260289 175 : SerProAlaAsnGluIleValTyrPheLeuGlnLeuLeuSerGlyLeuIleValAsnS : 194 |||||| !|||||||||||| ! !!:!!|||!!!:!!||||||!!!|||||||||| SerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnS 260290 : AGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATT : 260349 195 : erValThrValGlyAlaCysGlyMetAlaGlyValPheAlaMetHisAlaCysGlyGl : 213 || !||||||||| !! !.!!:!:|||!.!|||.!..!! |||||||||||||| erSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGl 260350 : CGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCA : 260406 214 : nLeuAsnValIleThrSerGlnLeuAsnAsnLeuVal<-><->ThrProAsnGluGlu : 230 ||||||||||:!!! !..! !:!!!...!.!!!||| :!! !|||..!:!! nLeuAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLys 260407 : GTTGAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAG : 260463 231 : GlnThrPheAlaLysLysLysLeuThrSerIleValGluArgHisLeuArgThrLeu : 249 :!!! ! ! !! |||:!!:!! ! !|||||||||!.!|||||||||.!!||| LysLysAlaProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeu 260464 : AAAAAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC : 260522 vulgar: Lalb_14627 0 249 . KQ414889.1 259769 260522 + 516 M 225 675 G 0 6 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259770 260522 516 + . gene_id 7 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259770 260522 . + . KQ414889.1 exonerate:protein2genome:local exon 259770 260522 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259770 260522 516 + . alignment_id 7 ; Query Lalb_14627 ; Align 259770 1 675 ; Align 260451 226 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 455 Query range: 1 -> 292 Target range: 284523 -> 286825 2 : TyrSerValGlnValAsnArgTrpPheLeuLysProIleGlyIleTrpProIleGlyP : 21 ||||||||||||:!!|||||||||||||||||||||||||||:!!||||||:!!.!!! TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 22 : roAspAlaThrArgSerGluArgIlePheSerSerLeuLeuAsnIleAlaCysHisSe : 40 ! !!.!|||! !! !|||!:!||| !||| !:!!||| :!! ! !! !! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 41 : rLeuValValPheThrPheAlaProCysValMetPheIleLeuPheGluGluThr<-> : 59 !|||:!!! !||| !!!.!.!||||||!.!:!!! !! !:!!.!!!!::!!||| eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 60 : SerLeuAspAlaArgIleGlnAlaIleGlyProMetSerHisTrpLeuMetGlyGluL : 78 ..!||||||.!!!:!|||:!! !|||||||||:!!||| !!! :!!|||!.!! !: AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 79 : euAsnTyrCysCysLeuSerPheArgThrAsnAspIlePheArgCysIleArgHisMe : 97 !!!!.|||! ! !|||! !! ||| !..! ! ||| !!:!|||:!:!:! !!!! leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 98 : tLysThrAsp{Tr} >>>> Target Intron 1 >>>> {p}LysThrIleGlu : 105 ::::.!!|||{||} 1012 bp {|} :!! !... eArgAlaAsp{Tr}++ +-{p}LeuSerHisSer 284813 : TCGTGCGGAC{TG}gt.........................ac{G}CTTTCGCATAGt : 285848 106 : LysSerSerAspArgGluLeuMetLeuLysAspAlaLysValGlyArgSerIleAlaT : 125 :::......:::||||||:::||| ! ! ..!|||!:!:!!|||||||||:!:|||! GlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaI 285849 : caagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGA : 285908 126 : hrIleAlaAlaValCysMetAsnLeuGlyValPheSerTyrAsnPheValThrGlyPh : 144 !.!!..!|||! !! !||| !!! !|||! !|||! !|||!.! |||! ! !!! lePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLe 285909 : TCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTT : 285965 145 : eGlnLysLeuGluPheHisValGlyAsnAspThrTyrSerMetLeuArgLeuProCys : 163 . ! !:!!... .!.:!! ! !|||!.! ! !!!:!! ! !! ! !!! ! uCysThrValArgThrGluIle---IleAspAsnGluThrValArgSerGlnAlaPhe 285966 : GTGCACAGTACGCACGGAGATC---ATCGACAACGAGACCGTGAGATCTCAAGCGTTC : 286019 164 : ProPheTyrSerAsnLeuMetAspValArgHisSerProAlaAsnGluIleValTyrP : 183 |||.!!||| !!..!|||:!:||| !||| !||||||:!! !||||||||| ! | ProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnP 286020 : CCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAAT : 286079 184 : heLeuGlnLeuLeuSerGlyLeuIleValAsnSerValThrValGlyAlaCysGlyMe : 202 ||:!!|||! !|||:!!!.!!!!:!!:!! !!|||||||||||||||||||||.!!:! heMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLe 286080 : TCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTT : 286136 203 : tAlaGlyValPheAlaMetHisAlaCysGlyGlnLeuAsnValIleThrSerGlnLeu : 221 !|||!.!||||||!.!||||||!.!|||||||||!!!!..:!!:!!..!!!!:!!||| uAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeu 286137 : GGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTG : 286193 222 : AsnAsnLeu<-><-><->ValThrProAsnGluGluGlnThrPheAlaLysLysLysL : 238 :!!!!.||| |||! ! !!..:!!! ! !!:! !:!!:!!::!| AspLysLeuValAspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgL 286194 : GATAAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGAC : 286253 239 : euThrSerIleValGluArgHisLeuArgThrLeu{As} >>>> Target Intro : 250 || !..!|||:!!|||!.!||||||!:!! !|||{..} 408 bp euGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 286254 : TGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt................. : 286293 251 : n 2 >>>> {n}PheValTrpTyrIleGluLysIleMetHisMetIleCysLeuVal : 265 {!}|||:!!! ! ! |||||| !:!!:!::!! ||||||!!!||| ++{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheVal 286294 : ........ag{T}TTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTC : 286742 266 : GluLeuMetGlyCysThrLeuAsnIleCysMetLeuGluTyrTyrMetLeuThrGluA : 285 |||:!!!!:|||||||||||||||||||||.!.|||! !||||||:!:||||||! ! GluValIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeuThrValT 286743 : GAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTACTGACGGTAA : 286802 286 : spSerThrGluArgMetAlaThr : 292 ..!||| !!:!: !||| hrGluThrThrCysValIleThr 286803 : CAGAGACGACTTGTGTTATTACC : 286825 vulgar: Lalb_14627 1 292 . KQ414889.1 284523 286825 + 455 M 57 171 G 0 3 M 42 126 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 50 150 G 1 0 M 72 216 G 0 9 M 25 75 S 0 2 5 0 2 I 0 404 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 286825 455 + . gene_id 8 ; sequence Lalb_14627 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284524 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286698 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286825 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286825 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284524 286825 455 + . alignment_id 8 ; Query Lalb_14627 ; Align 284524 2 171 ; Align 284698 59 126 ; Align 285839 102 150 ; Align 285989 153 216 ; Align 286214 225 75 ; Align 286700 251 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 439 Query range: 2 -> 252 Target range: 221381 -> 222134 3 : SerValGlnValAsnArgTrpPheLeuLysProIleGlyIleTrpProIleGlyProA : 22 |||||||||:!!!:!||||||.!!|||||||||||||||:!!||||||! !..! !!: SerValGlnLeuSerArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaA 221382 : AGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCA : 221439 23 : spAlaThrArgSerGluArgIlePheSerSerLeuLeuAsnIleAlaCysHisSerLe : 41 !! !:!!! ! !|||||| !.!!! !!!!|||:!!|||:!!!.!|||:!!||||| snIleSerThrValGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLe 221440 : ACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCT : 221496 42 : uValValPheThrPheAlaProCysValMetPheIleLeuPheGluGluThrSerLeu : 60 |:!!..!||| !!!.!.!|||||| !:!:!:!:!::!!.!!|||! ! !..!:!! uIleThrPheLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspVal 221497 : GATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTC : 221553 61 : AspAlaArgIleGlnAlaIleGlyProMetSerHisTrpLeuMetGlyGluLeuAsnT : 80 !! !||||||:!! !:!:||||||:!!||| !!! :!!|||!.! |||!!.| TyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysT 221554 : TACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGT : 221613 81 : yrCysCysLeuSerPheArgThrAsnAspIlePheArgCysIleArgHisMetLysTh : 99 || ! |||! !.!! ! !||||||||| !..!||||||..!!.!!!::!! yrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTr 221614 : ATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATG : 221670 100 : rAspTrpLysThrIleGluLysSerSerAspArgGluLeuMetLeuLysAspAlaLys : 118 !|||||||||!.!||| ! |||!.!|||!:!!!::!!|||:!!:!!:!!|||! pAspTrpLysAsnIleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIle 221671 : GGATTGGAAGAATATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATT : 221727 119 : ValGlyArgSerIleAlaThrIleAlaAlaValCysMetAsnLeuGlyValPheSerT : 138 !!|||||| !!:!: !! !|||..!.!! !!! !||| !! !||| | PheGlyArgArgLeuIleMetIleCysThrPhePheMetTyrSerGlyPheValPheT 221728 : TTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGTACAGTggtttcgtttttt : 221787 139 : yrAsnPheValThrGlyPheGlnLysLeuGluPheHisValGlyAsnAspThrTyrSe : 157 || ...!.!! ! !|||... ! !:!!.!!! !!.! !:!! ... :: yrTyrIleAlaIleProPheSerValGlyLysIleProAlaGlnAspValAsnValTh 221788 : attacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaac : 221844 158 : rMetLeuArgLeuProCysProPheTyrSerAsnLeuMetAspValArgHisSerPro : 176 :...:::! !:!! !! !||||||! !!! !:!!:!:|||..!|||:!!|||||| rPheIleProMetValPheProPheSerArgPheIleValAspThrArgTyrSerPro 221845 : ttttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCT : 221901 177 : AlaAsnGluIleValTyrPheLeuGlnLeuLeuSerGlyLeuIleValAsnSerValT : 196 !.!|||||||||:!!!:!! ||||||:!!:!!:!!||| !:!::!!:!!|||:!!| ValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleT 221902 : GTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTA : 221961 197 : hrValGlyAlaCysGlyMetAlaGlyValPheAlaMetHisAlaCysGlyGlnLeuAs : 215 || !!.!||||||.!!:!!!.!!.!:!!||||||:!!|||||||||||||||:!!.! hrSerAlaAlaCysSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMetGl 221962 : CATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCA : 222018 216 : nValIleThrSerGlnLeuAsnAsnLeuValThrProAsnGluGluGln<->ThrPhe : 233 .|||:!:! !||| !|||!!.:!!|||:!!!.! !...! !!!:..! !.! ! nValLeuMetSerTrpLeuLysHisLeuIleAsnGlyArgAlaAspMetCysAsnAsn 222019 : AGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGCCGGGCGGATATGTGTAACAAC : 222075 234 : AlaLysLysLysLeuThrSerIleValGluArgHisLeuArgThrLeuAsnPheVal : 252 !.! ! !:!!:!:!!.!!!.!||||||.!.!:!|||:!!|||! !|||.!.!:!||| ValAspArgArgIleAlaLysIleValAsnGlnHisValArgIleLeuGlnTyrVal 222076 : GTGGATAGGAGAATAGCGAAGATTGTGAATCAACACGTTCGAATATTGCAGTATGTA : 222134 vulgar: Lalb_14627 2 252 . KQ414889.1 221381 222134 + 439 M 229 687 G 0 3 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221382 222134 439 + . gene_id 9 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221382 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221382 222134 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221382 222134 439 + . alignment_id 9 ; Query Lalb_14627 ; Align 221382 3 687 ; Align 222072 232 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 434 Query range: 0 -> 252 Target range: 217171 -> 217930 1 : AsnTyrSerValGlnValAsnArgTrpPheLeuLysProIleGlyIleTrpProIleG : 20 ||| |||:!!||| !|||||||||!!.|||||||||!!:|||:!!||||||! !. AsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnS 217172 : aatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACT : 217229 21 : lyProAspAlaThrArgSerGluArgIlePheSerSerLeuLeuAsnIleAlaCysHi : 39 .!! ! !.!!|||||||||..!!:!|||.!!! !!.!|||:!!||| ! !|||:! erArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTy 217230 : CACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTA : 217286 40 : sSerLeuValValPheThrPheAlaProCysValMetPheIleLeuPheGluGluThr : 58 !.!!|||:!! !||| !|||!.!|||||| !|||!:!:!:!!!.!!|||! ! rGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeuGluValGlu 217287 : CGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAA : 217343 59 : SerLeuAspAlaArgIleGlnAlaIleGlyProMetSerHisTrpLeuMetGlyGluL : 78 ..!||| !!! !!:!:!::!! !.!!||||||:!!! ! !!! :!!|||!.! : AspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValMetAlaPheV 217344 : GATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCG : 217403 79 : euAsnTyrCysCysLeuSerPheArgThrAsnAspIlePheArgCysIleArgHisMe : 97 !!!!.|||! !! !|||! ! !!!.!! ! |||||| !..!|||:!:|||...!! alLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCysValArgArgIl 217404 : TCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAAT : 217460 98 : tLysThrAspTrpLysThrIleGluLysSerSerAspArgGluLeuMetLeuLysAsp : 116 ::!! !||||||!:!!.!:!!..! ..!!.!||||||||| !|||:!! !:!! eGluArgAspTrpArgAsnValArgCysGluLysAspArgGluAlaMetIleValAsn 217461 : CGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAAC : 217517 117 : AlaLysValGlyArgSerIleAlaThrIleAlaAlaValCysMetAsnLeuGlyValP : 136 |||!!. !!||||||!.!:!:!.! !:!!..!.!! !!! !||| !! !||| AlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheV 217518 : GCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcg : 217577 137 : heSerTyrAsnPheValThrGlyPheGlnLysLeuGluPheHisValGlyAsnAspTh : 155 ||| ..!!.!! ! !.!!... ! !..!.!!! !! !|||! !. alPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGluAsnGlyAs 217578 : ttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAA : 217634 156 : rTyrSerMetLeuArgLeuProCysProPheTyrSerAsnLeuMetAspValArgHis : 174 ! !!!!.!.:!!! !||| !! !|||||| !.! !!:!!!!:|||..!|||:!! nLeuThrPheIleProLeuValPheProPheThrLysTyrIleIleAspThrArgTyr 217635 : CCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTAC : 217691 175 : SerProAlaAsnGluIleValTyrPheLeuGlnLeuLeuSerGlyLeuIleValAsnS : 194 !!!|||.!!||||||||||||!:!||||||||||||:!!:!!||| !:!::!!:!!. ThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisG 217692 : ACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACG : 217751 195 : erValThrValGlyAlaCysGlyMetAlaGlyValPheAlaMetHisAlaCysGlyGl : 213 !!:!!||| !!.!||||||.!!:!!|||!.!!.!||||||:!:|||||||||||||| lyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGl 217752 : GAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCA : 217808 214 : nLeuAsnValIleThrSerGlnLeuAsnAsnLeuValThrProAsnGluGluGlnThr : 232 |:!!.!.|||:!:! !!:! !|||.!.:!!|||:!! ! !!..! !!!:..!!:! nIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgAlaAspMetSer 217809 : GATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGAGCGGATATGAGC : 217865 233 : <->PheAlaLysLysLysLeuThrSerIleValGluArgHisLeuArgThrLeuAsnP : 251 !!.! ! !:!:!!.!!|||||||||...!:!|||:!!|||! !|||!!.! AspThrValAspGlyArgIleAlaSerIleValSerGlnHisValArgIleLeuLysC 217866 : GATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTAAAGT : 217925 252 : heVal : 252 !||| ysVal 217926 : GTGTA : 217930 vulgar: Lalb_14627 0 252 . KQ414889.1 217171 217930 + 434 M 232 696 G 0 3 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217172 217930 434 + . gene_id 10 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217172 217930 . + . KQ414889.1 exonerate:protein2genome:local exon 217172 217930 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217172 217930 434 + . alignment_id 10 ; Query Lalb_14627 ; Align 217172 1 696 ; Align 217871 233 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 418 Query range: 0 -> 252 Target range: 226927 -> 227686 1 : AsnTyrSerValGlnValAsnArgTrpPheLeuLysProIleGlyIleTrpProIleG : 20 ||| |||:!!|||:!!|||||||||.!.|||||||||:!!|||||||||||| . AsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerS 226928 : AACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGT : 226985 21 : lyProAspAlaThrArgSerGluArgIlePheSerSerLeuLeuAsnIleAlaCysHi : 39 .!! ! ! ::!:!!|||! !! !||| !||||||!!!|||:!!..!.!! !|||:! erArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTy 226986 : CGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTA : 227042 40 : sSerLeuValValPheThrPheAlaProCysValMetPheIleLeuPheGluGluThr : 58 !:!!|||:!! !||| !!!.!.! !! !!! !:!!!:!:!::!!.!.|||! !! ! rAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLys 227043 : CGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAA : 227099 59 : SerLeuAspAlaArgIleGlnAlaIleGlyProMetSerHisTrpLeuMetGlyGluL : 78 .!! ! !! !! !:!::!! !||||||||||||||| !!:: !|||..! | GlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuL 227100 : GGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCC : 227159 79 : euAsnTyrCysCysLeuSerPheArgThrAsnAspIlePheArgCysIleArgHisMe : 97 ||!!.|||! ! |||!!!|||!.! !:!!||||||.!!..!|||:!!..!!..!! euLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIl 227160 : TCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGAT : 227216 98 : tLysThrAspTrpLysThrIleGluLysSerSerAspArgGluLeuMetLeuLysAsp : 116 :||| !|||||||||!.!|||..! ! !..!||||||.!.:!!|||:!!! ! !! eLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyr 227217 : CAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTAC : 227273 117 : AlaLysValGlyArgSerIleAlaThrIleAlaAlaValCysMetAsnLeuGlyValP : 136 ||| ! !||||||!.!:!: !||||||..!.!! !!! !:!: ! ... AlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheV 227274 : GCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcg : 227333 137 : heSerTyrAsnPheValThrGlyPheGlnLysLeuGluPheHisValGlyAsnAspTh : 155 ::: .!!|||..! !.!!.!. !... !! ..!! !:!!! !. alPhePheTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGlyAs 227334 : tatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAA : 227390 156 : rTyrSerMetLeuArgLeuProCysProPheTyrSerAsnLeuMetAspValArgHis : 174 !:!!||| :!!!:!:!!|||! !|||||| !.!! !:!! |||||||||:!! nHisSerTyrIleGlnMetProPheProPheProLysIleIleAlaAspValArgTyr 227391 : CCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTAC : 227447 175 : SerProAlaAsnGluIleValTyrPheLeuGlnLeuLeuSerGlyLeuIleValAsnS : 194 |||||| !||||||||| !!!:!! :!!|||!!!:!!!!!|||:!!:!::!!:!!. SerProPheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuHisG 227448 : AGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACG : 227507 195 : erValThrValGlyAlaCysGlyMetAlaGlyValPheAlaMetHisAlaCysGlyGl : 213 !!|||||| !!.!||||||.!!||||||!.!:!!.!!|||:!:|||||||||||||| lyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGl 227508 : GTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCA : 227564 214 : nLeuAsnValIleThrSerGlnLeuAsnAsnLeuValThrProAsnGluGluGlnThr : 232 |:!!.!.|||:!:..!||| !|||...:!!|||:!! ! !!..! !!!:..!!:! nMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGlyArgAlaAspMetSer 227565 : GATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGCAGAGCGGATATGAGC : 227621 233 : <->PheAlaLysLysLysLeuThrSerIleValGluArgHisLeuArgThrLeuAsnP : 251 ! ! ! !:!:!!.!!||||||||| !.!|||:!!|||! !|||!!.! LysThrLeuAspAspArgIleAlaSerIleValThrHisHisValArgIleLeuLysC 227622 : AAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACCACGTTCGAATATTGAAGT : 227681 252 : heVal : 252 !||| ysVal 227682 : GTGTA : 227686 vulgar: Lalb_14627 0 252 . KQ414889.1 226927 227686 + 418 M 232 696 G 0 3 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226928 227686 418 + . gene_id 11 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226928 227686 . + . KQ414889.1 exonerate:protein2genome:local exon 226928 227686 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226928 227686 418 + . alignment_id 11 ; Query Lalb_14627 ; Align 226928 1 696 ; Align 227627 233 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 387 Query range: 0 -> 252 Target range: 212869 -> 213628 1 : AsnTyrSerValGlnValAsnArgTrpPheLeuLysProIleGlyIleTrpProIleG : 20 ||| |||::: ! !|||||||||.!!|||||||||! |||:!:|||||| ! AsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspL 212870 : aatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACA : 212927 21 : lyProAspAlaThrArgSerGluArgIlePheSerSerLeuLeuAsnIleAlaCysHi : 39 ! !! !!!.!:!!! !! !|||!:!! !.!!:!! !!|||:!!|||! !!.!|||:! ysSerTyrValSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTy 212928 : AGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTA : 212984 40 : sSerLeuValValPheThrPheAlaProCysValMetPheIleLeuPheGluGluThr : 58 !.!!|||:!!! !!:! ! ! !|||||| !:!!!:!:!:!!!.!!!!:! ! rGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGlu 212985 : CGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgag : 213041 59 : SerLeuAspAlaArgIleGlnAlaIleGlyProMetSerHisTrpLeuMetGlyGluL : 78 :::::: ...|||:!! !.!!||| !.!.:!! !!! :!! !.! !! AsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuT 213042 : aatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGT : 213101 79 : euAsnTyrCysCysLeuSerPheArgThrAsnAspIlePheArgCysIleArgHisMe : 97 !!!.||| !! |||! !.!!!.! !:!!|||||| !! !|||:!!..!||||| rpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMe 213102 : GGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATAT : 213158 98 : tLysThrAspTrpLysThrIleGluLysSerSerAspArgGluLeuMetLeuLysAsp : 116 |||| !|||||||||!.!||| ! ! ..!..!|||!:!|||:!!||| ! !:!! tLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsn 213159 : GAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAAC : 213215 117 : AlaLysValGlyArgSerIleAlaThrIleAlaAlaValCysMetAsnLeuGlyValP : 136 |||!.. !!|||!:!!!!|||!.!||||||..!||| !!! !||| !! !||| !! AlaSerPheGlyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheT 213216 : GCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCA : 213275 137 : heSerTyrAsnPheValThrGlyPheGlnLysLeuGluPheHisValGlyAsnAspTh : 155 ! !||| !.!!|||..! !.!!... ! !:!!.!. !.!! !:!! !!. hrPheTyrPheLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAs 213276 : CGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAA : 213332 156 : rTyrSerMetLeuArgLeuProCysProPheTyrSerAsnLeuMetAspValArgHis : 174 ! !!!.!. !!:!:!! ! !||| !!! !!! !:!!:!:|||||||||:!! nValThrPheArgGlnMetValValProValSerArgPheIleValAspValArgTyr 213333 : CGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATAC : 213389 175 : SerProAlaAsnGluIleValTyrPheLeuGlnLeuLeuSerGlyLeuIleValAsnS : 194 ||||||!.!||||||||| !!!:!!!.:!!|||:!!:!!:!!|||:!!:!::!!:!!: SerProValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisA 213390 : AGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATG : 213449 195 : erValThrValGlyAlaCysGlyMetAlaGlyValPheAlaMetHisAlaCysGlyGl : 213 !!:!!.!!|||! !||||||.!!:!!|||!.!|||||||||:!:|||||||||||||| laIleAlaValValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGl 213450 : CTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACA : 213506 214 : nLeuAsnValIleThrSerGlnLeuAsnAsnLeuValThrProAsnGluGluGlnThr : 232 |:!!..!:!!:!:! !||| !|||.!.:!!|||:!! ! !!..|||!!:..!!:! nMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGlyArgGluAspMetSer 213507 : GATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGC : 213563 233 : <->PheAlaLysLysLysLeuThrSerIleValGluArgHisLeuArgThrLeuAsnP : 251 !!.! ! ! !:!:!!.!! !||||||.!.!:!|||:!!|||! !|||!!.! LysAsnValAspAspArgIleAlaValIleValAsnGlnHisValArgIleLeuLysT 213564 : AAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTGAAGT : 213623 252 : heVal : 252 ::||| rpVal 213624 : GGGTG : 213628 vulgar: Lalb_14627 0 252 . KQ414889.1 212869 213628 + 387 M 232 696 G 0 3 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212870 213628 387 + . gene_id 12 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212870 213628 . + . KQ414889.1 exonerate:protein2genome:local exon 212870 213628 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212870 213628 387 + . alignment_id 12 ; Query Lalb_14627 ; Align 212870 1 696 ; Align 213569 233 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 364 Query range: 1 -> 225 Target range: 278576 -> 279257 2 : TyrSerValGlnValAsnArgTrpPheLeuLysProIleGlyIleTrpProIleGlyP : 21 ||||||||||||:!!|||||||||||||||||||||||||||:!!||||||:!!.!!! TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 22 : roAspAlaThrArgSerGluArgIlePheSerSerLeuLeuAsnIleAlaCysHisSe : 40 ! !!.!|||! !! !|||!:!||| !||| !:!!||| :!! ! !! !! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 41 : rLeuValValPheThrPheAlaProCysValMetPheIleLeuPheGluGluThr<-> : 59 !|||:!!! !||| !!!.!.!||||||!.!:!!! !! !:!!.!!!!::!!||| eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 60 : SerLeuAspAlaArgIleGlnAlaIleGlyProMetSerHisTrpLeuMetGlyGluL : 78 ..!||||||.!!!:!|||:!! !|||||||||:!:||| !!! !|||!.! !: AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 79 : euAsnTyrCysCysLeuSerPheArgThrAsnAspIlePheArgCysIleArgHisMe : 97 !!!!.|||! ! !|||! !! ||| !..! ! ||| !!:!|||:!:!.! !!!! leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 98 : tLysThrAspTrpLys<-><-><->ThrIleGluLysSerSerAspArgGluLeuMet : 113 ::::|||||||||... :!! !...:::......:::||||||:::||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 114 : LeuLysAspAlaLysValGlyArgSerIleAlaThrIleAlaAlaValCysMetAsnL : 133 ! ! ..!|||!:!:!!|||||||||:!:|||! !.!!::!|||! !! !||| !!! ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 134 : euGlyValPheSerTyrAsnPheValThrGlyPheGlnLysLeuGluPheHisValGl : 152 !|||! ! !!! !|||!.! !|||! ! !!!. !:!!... .!.:!! erGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIle-- 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATC-- : 279039 153 : yAsnAspThrTyrSerMetLeuArgLeuProCysProPheTyrSerAsnLeuMetAsp : 171 ! !|||!.! ! !!!:!! ! !! ! !!! !|||.!!||| !!..!|||:!:||| -IleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAsp 279040 : -ATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGAT : 279093 172 : ValArgHisSerProAlaAsnGluIleValTyrPheLeuGlnLeuLeuSerGlyLeuI : 191 !||| !||||||:!! !||||||||| ! |||:!!|||! !|||:!!!.!!!!: ProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheV 279094 : CCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCG : 279153 192 : leValAsnSerValThrValGlyAlaCysGlyMetAlaGlyValPheAlaMetHisAl : 210 !!:!! !!|||||||||||||||||||||.!!:!! !!.!||||||!.!||||||!. alLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisVa 279154 : TTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGT : 279210 211 : aCysGlyGlnLeuAsnValIleThrSerGlnLeuAsnAsnLeuVal : 225 !|||||||||!!!!..:!!:!!..!!!!:!!|||:!!!!.|||:!! lCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIle 279211 : CTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATC : 279257 vulgar: Lalb_14627 1 225 . KQ414889.1 278576 279257 + 364 M 57 171 G 0 3 M 44 132 G 0 9 M 49 147 G 1 0 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 279257 364 + . gene_id 13 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278577 279257 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279257 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278577 279257 364 + . alignment_id 13 ; Query Lalb_14627 ; Align 278577 2 171 ; Align 278751 59 132 ; Align 278892 103 147 ; Align 279039 153 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 360 Query range: 0 -> 261 Target range: 236849 -> 237632 1 : AsnTyrSerValGlnValAsnArgTrpPheLeuLysProIleGlyIleTrpProIleG : 20 :!!||||||:!!||| !||||||||| :!!||| !||||||! !|||||| AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpPro---- 236850 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCA---- : 236904 21 : lyProAspAlaThrArgSerGluArgIlePheSerSerLeuLeuAsnIleAlaCysHi : 39 ! ! !:!!:!!!.! !||||||! !.!!||| !!:!!||||||:!: !|||:! --GlnPheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTy 236905 : --CAGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTA : 236958 40 : sSerLeuValValPheThrPheAlaProCysValMetPheIleLeuPheGluGluThr : 58 !!!! !:!!:!!|||:!!.!. !|||||| !:!! !:!!:!!.!.|||:!! ! rThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGly 236959 : CACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGG : 237015 59 : SerLeuAspAlaArgIleGlnAlaIleGlyProMetSerHisTrpLeuMetGlyGluL : 78 !!!!!! !!.!!!:!:!::!! !:!!||| !!:!!|||||||||:!!.!. !! : ThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleI 237016 : ACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCA : 237075 79 : euAsnTyrCysCysLeuSerPheArgThrAsnAspIlePheArgCysIleArgHisMe : 97 !!!:!||| ! |||! !.!.||| !!!. !||| !!.!! !.!!!.!||||| leSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMe 237076 : TCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATAT : 237132 98 : tLysThrAspTrpLysThrIleGluLysSerSerAspArgGluLeuMetLeuLysAsp : 116 |:!!|||||||||!:!|||! :::...... :::|||:::||||||||| !! tGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyr 237133 : GGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTAC : 237189 117 : AlaLysValGlyArgSerIleAlaThrIleAlaAlaValCysMetAsnLeuGlyValP : 136 |||||| !!.!!|||! ! |||! ! !..!.!!:!!! !!!::!! !|||:!!. AlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleL 237190 : GCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATAC : 237249 137 : heSerTyrAsnPheValThrGlyPheGlnLysLeuGluPheHisValGlyAsnAspTh : 155 !!.!!||| ! !!:!!|||!.!! ! ! !:!!! !! ||||||||| ! || euGlyTyrCysValMetThrAlaSerThrThrMetValValValValGlyAsnLysTh 237250 : TTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGAC : 237306 156 : rTyrSerMetLeuArgLeuProCysProPheTyrSerAsnLeuMetAspValArgHis : 174 | ! !:!!! ! !||||||! |||.!.|||!.!...|||:!: ||| ! rThrIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThr 237307 : TACGATCTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACG : 237363 175 : SerProAlaAsnGluIleValTyrPheLeuGlnLeuLeuSerGlyLeuIleValAsnS : 194 !:! !! !|||!!:|||||| !!!.! !|||!!!|||||||||!!!|||!.!|||! AsnThrMetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnA 237364 : AATACTATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACA : 237423 195 : erValThrValGlyAlaCysGlyMetAlaGlyValPheAlaMetHisAlaCysGlyGl : 213 :! !.!!:!!.!!!.! .!!:!:.!!.!!!.!.!..!! ||||||! !||||| snSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGl 237424 : ACAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCA : 237480 214 : nLeuAsnValIleThrSerGlnLeuAsnAsnLeuValThrProAsnGluGluGlnThr : 232 ||||!:!|||:!!! !! !..!:!!.!.:!!!!!|||!:! ! ..!...::! ! nLeuSerValValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgGly 237481 : GTTGAGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGG : 237537 233 : PheAlaLys<-><->LysLysLeuThrSerIleValGluArgHisLeuArgThrLeuA : 250 ! ! ! ! :!!:!! !!!!!|||||||||..!|||||||||..!|||! LysAspAspHisPheAspGluIleProThrIleValGluGluHisLeuArgValLeuL 237538 : AAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGA : 237597 251 : snPheValTrpTyrIleGluLysIleMetHisMet : 261 !.! |||!! ! :!:!!: !|||:!!! ||| ys***ValCysLeuLeuAspLeuIleLeuLeuMet 237598 : AGTAAGTATGTTTGTTGGATTTGATTTTGCTGATG : 237632 vulgar: Lalb_14627 0 261 . KQ414889.1 236849 237632 + 360 M 18 54 G 2 0 M 215 645 G 0 6 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236850 237632 360 + . gene_id 14 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236850 237632 . + . KQ414889.1 exonerate:protein2genome:local exon 236850 237632 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236850 237632 360 + . alignment_id 14 ; Query Lalb_14627 ; Align 236850 1 54 ; Align 236904 21 645 ; Align 237555 236 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 322 Query range: 96 -> 283 Target range: 304413 -> 305038 97 : MetLysThrAspTrpLysThrIleGluLysSerSerAspArgGluLeuMetLeuLysA : 116 :!:...|||! !:::!! !:!:|||... !!!!|||||||||:!!||||||||| LeuSerThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysT 304414 : CTCTCTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAAT : 304471 117 : spAlaLysValGlyArgSerIleAlaThrIleAlaAlaValCysMetAsnLeuGlyVa : 135 !!!.!:!!:!!||||||!:!:!:.!!! !|||..!|||:!!! !||| !! !|||! yrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGl 304472 : ACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGG : 304528 136 : lPheSerTyrAsnPheValThrGlyPheGlnLysLeuGluPheHisValGlyAsnAsp : 154 ! !! !|||:!! |||! ! !||| ! !! ! :!!|||! !.!. !! yThrIleTyrHisThrValMetGlnPhe---AlaThrGlyThrTyrValAspGluTyr 304529 : CACCATTTATCACACGGTCATGCAGTTC---GCGACCGGAACGTATGTGGATGAGTAT : 304582 155 : ThrTyrSerMetLeuArgLeuProCysProPheTyrSerAsnLeuMetAspValArgH : 174 !.! !!!!!!: !! !||| !! !||| !|||||| !|||.!.||||||!:! AsnArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnT 304583 : AATCGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAA : 304642 175 : isSerProAlaAsnGluIleValTyrPheLeuGlnLeuLeuSerGlyLeuIleValAs : 193 |||||| ! !!|||:!:|||||||||:!!!!.! !:!!!!!|||! !:!!:!! ! hrSerProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTy 304643 : CAAGCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTA : 304699 194 : nSerValThrValGlyAlaCysGlyMetAlaGlyValPheAlaMetHisAlaCysGly : 212 !|||:!!|||!.!||||||||||||:!:|||!.!:!!||||||! |||||||||||| rSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGly 304700 : TTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGA : 304756 213 : GlnLeuAsnValIleThrSerGlnLeuAsnAsnLeuValThrProAsnGluGluGlnT : 232 |||:!!:!!:!!:!!! !|||!:!|||..!:!!||||||!.! !:!:!!|||..!: GlnIleAspIleValMetSerArgLeuGlyAspLeuValAsn---SerLysGluSerS 304757 : CAAATTGATATCGTTATGTCTCGATTGGGTGATCTTGTCAAC---AGCAAAGAATCAT : 304813 233 : hrPheAlaLysLysLysLeuThrSerIleValGluArgHisLeuArgThrLeu{As} : 250 !! ! ! ! |||::!|||! !..!|||||||||!.!|||||||||! !|||{!.} erAspLeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIleLeu{Ar}+ 304814 : CTGATTTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTA{AG}g : 304869 251 : >>>> Target Intron 1 >>>> {n}PheValTrpTyrIleGluLysIleMet : 259 70 bp {.}||| ! :!::!!! !:!::!! + ++{g}PheSerAlaIleValGlnThrValLeu 304870 : t.........................ag{A}TTCTCGGCAATAGTGCAAACAGTGTTG : 304964 260 : HisMetIleCysLeuValGluLeuMetGlyCysThrLeuAsnIleCysMetLeuGluT : 279 !!. :!!|||!!!:!!|||!!!!!:|||! !|||||| ||||||:!:||||||| GlnGluValCysPheLeuGluPheIleGlySerThrLeuLeuIleCysLeuLeuGluT 304965 : CAAGAAGTATGCTTCTTGGAATTCATTGGTTCTACCTTACTGATATGTCTACTTGAAT : 305024 280 : yrTyrMetLeuThr : 283 ||||| :!!||| yrTyrCysIleThr 305025 : ACTACTGTATAACG : 305038 vulgar: Lalb_14627 96 283 . KQ414889.1 304413 305038 + 322 M 48 144 G 1 0 M 81 243 G 1 0 M 22 66 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304414 305038 322 + . gene_id 15 ; sequence Lalb_14627 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 304414 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304414 304868 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304414 305038 322 + . alignment_id 15 ; Query Lalb_14627 ; Align 304414 97 144 ; Align 304558 146 243 ; Align 304801 228 66 ; Align 304940 251 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 311 Query range: 0 -> 224 Target range: 289732 -> 290401 1 : AsnTyrSerValGlnValAsnArgTrpPheLeuLysProIleGlyIleTrpPro<->I : 19 ..!|||!!! !!:!!:!! !!.!|||.!!|||||||||||||||!!:!::||| : ArgTyrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrProPheV 289733 : CGTTACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCG : 289790 20 : leGlyProAspAlaThrArgSerGluArgIlePheSerSerLeuLeuAsnIleAlaCy : 38 !! ! ! !|||!:!||| !!||||||! ||| !||||||! !:!:!.!|| alPheSerArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLeuValCy 289791 : TCTTTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATG : 289847 39 : sHisSerLeuValValPheThrPheAlaProCysValMetPheIleLeuPheGluGlu : 57 | !|||:!!:!! !|||! !.!.!.!|||! ! ! !:!!||||||...!!: sCysSerIleLeuGlnPheIleIleValProPheSerHisHisValLeuPheSerAsp 289848 : TTGCTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGAC : 289904 58 : ThrSerLeuAspAlaArgIleGlnAlaIleGlyProMetSerHisTrpLeuMetGlyG : 77 !.!..!:!!:!!.!! !:!!:!! !:!!||||||:!!!!! !!! |||! ! AsnAspMetAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuThrThrP 289905 : AACGACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGT : 289964 78 : luLeuAsnTyrCysCysLeuSerPheArgThrAsnAspIlePheArgCysIleArgHi : 96 !!!!!.||||||! !!!!|||.!.!:! !:::! ||| !||||||:!:!:!|| hePheLysTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysValLysHi 289965 : TCTTCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACA : 290021 97 : sMetLysThrAspTrpLysThrIleGluLysSerSerAspArgGluLeuMetLeuLys : 115 |!!::!!! !|||||||||! !:!:... ! ..!..! !!|||! :!!||||||!:! sIleGluArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMetLeuArg 290022 : CATCGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGA : 290078 116 : AspAlaLysValGlyArgSerIleAlaThrIleAlaAlaValCysMetAsnLeuGlyV : 135 !!!.!! !:!!.!!|||!:!:!! !! !:!:..!|||:!!! !:!! !!:!!|||! TyrValThrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyG 290079 : TACGTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTG : 290138 136 : alPheSerTyrAsnPheValThrGlyPheGlnLysLeuGluPheHisValGlyAsnAs : 154 !.!.||||||||| !|||! ! !!!. ..! !:!! ! !||||||! lyLeuSerTyrAsnThrValIleProLeuPheSerLysLysSerValAsnGlyAsnVa 290139 : GTCTGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGGTAACGT : 290195 155 : pThrTyrSerMetLeuArgLeuProCysProPheTyrSerAsnLeuMetAspValArg : 173 ||| !!: !! !||| !!! !||| !|||..!.!.!!!.!.||||||!:! lThr------IleArgProLeuThrTyrProGlyTyrGluGluPhePheAspValGln 290196 : GACT------ATCAGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAG : 290246 174 : HisSerProAlaAsnGluIleValTyrPheLeuGlnLeuLeuSerGlyLeuIleValA : 193 ! ||||||||| !!|||||||||!:!! !:!!!!.! !:!!! !! !:!!|||..! LysSerProAlaTyrGluIleValPheCysMetHisCysValTyrValMetIleThrA 290247 : AAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGG : 290306 194 : snSerValThrValGlyAlaCysGlyMetAlaGlyValPheAlaMetHisAlaCysGl : 212 !:!:!!|||:!!!.!|||! !.!!:!!.!! !:!!||||||! |||.!!||||| laAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGl 290307 : CGAACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGG : 290363 213 : yGlnLeuAsnValIleThrSerGlnLeuAsnAsnLeu : 224 ||||:!!!!.:!! !|||!!!!:!|||.!.:!!||| yGlnIleLysIleGlnThrThrArgLeuGluAspLeu 290364 : TCAGATTAAGATACAAACGACGCGGCTGGAGGATCTG : 290401 vulgar: Lalb_14627 0 224 . KQ414889.1 289732 290401 + 311 M 18 54 G 0 3 M 137 411 G 2 0 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289733 290401 311 + . gene_id 16 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289733 290401 . + . KQ414889.1 exonerate:protein2genome:local exon 289733 290401 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289733 290401 311 + . alignment_id 16 ; Query Lalb_14627 ; Align 289733 1 54 ; Align 289790 19 411 ; Align 290201 158 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 250 Query range: 246 -> 372 Target range: 224128 -> 224664 247 : ArgThrLeuAsnPheValTrpTyrIleGluLysIleMetHisMetIleCysLeuValG : 266 !:! !! !!..|||:!! !:!!! !|||||| !:!!!!....:!!! !!!|||| LysCysCysArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValG 224129 : AAATGTTGCAGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGG : 224186 267 : luLeuMetGlyCysThrLeuAsnIleCysMetLeuGluTyrTyrMetLeuThrGluAs : 285 ||!!!:!:||||||! !||||||||||||:!:|||! !||||||:!::!!..!! ! luPheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleValValAr 224187 : AATTTCTAGGCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTGGTACG : 224243 286 : pSerThrGlu{Ar} >>>> Target Intron 1 >>>> {g}MetAlaThrTyr : 293 !.!! ! {! } 93 bp {!} !!.!|||||| gLysLysIle{Th}++ ++{r}AlaValThrTyr 224244 : AAAGAAAATC{AC}gt.........................ag{C}GCGGTGACTTAC : 224360 294 : AlaIleLeuTyrValSerMetIlePheAsnIlePheIlePheCysTyrIleGlyGluL : 313 !|||||| !:!!|||::: ||||||||||||||||||||||||||||||||| PheIleLeuLeuMetSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluL 224361 : TTCATACTACTCATGTCtcttactttcaatatttttatattttgttacatAGGAGAGC : 224420 314 : ysLeuThrThrGln >>>> Target Intron 2 >>>> CysLeuGlnValGly : 322 !:!!.!! !||| 65 bp ||| ::::::||| euValAlaGluGln++ ++CysGluLysIleGly 224421 : TGGTAGCTGAAcaggt.........................agtgtgaaaaaattgga : 224512 323 : GluLysAlaTyrMetThrGlnTrpTyrArgLeuProHisLysThrAlaThrGlyLeuI : 342 ::! !:!!||||||! !.!.|||||||||||| !! !!.! ! ! ! !!! !| GlnValSerTyrMetIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysI 224513 : caAGTGTCGTACATGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCA : 224572 343 : leLeuLeuIleSerArgSerArgMetValThrArgIleThrAlaGlyLysLeuLeuPr : 361 |||||:!!|||:!!! !|||!.! !! !!:!:!:|||||||||!!.:!!:!! leLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGl 224573 : TTCTGATAATCGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGA : 224629 362 : oIleSerIleSerThrPheGlyAspValSerIle : 372 !:!:!!!:!!!!!||||||||||||||||||||| uLeuCysLeuThrThrPheGlyAspValSerIle 224630 : ACTGTGTCTAACCACTTTCGGTGACGTAAGTATC : 224664 vulgar: Lalb_14627 246 372 . KQ414889.1 224128 224664 + 250 M 42 126 S 0 2 5 0 2 I 0 89 3 0 2 S 1 1 M 28 84 5 0 2 I 0 61 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224129 224664 250 + . gene_id 17 ; sequence Lalb_14627 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224129 224256 . + . KQ414889.1 exonerate:protein2genome:local exon 224129 224256 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224257 224258 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224257 224349 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224348 224349 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 224350 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224350 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224664 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224664 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224129 224664 250 + . alignment_id 17 ; Query Lalb_14627 ; Align 224129 247 126 ; Align 224351 290 84 ; Align 224500 318 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 222 Query range: 249 -> 372 Target range: 300614 -> 302042 250 : AsnPheValTrpTyrIleGluLysIleMetHisMetIleCysLeuValGluLeuMetG : 269 !..|||!.! ! !!:!!|||:!!! !:!!!.! .!!||||||||||||:!!.!.! ArgPheAlaLysAsnValGluGluThrLeuArgAspPheCysLeuValGluIlePheG 300615 : AGATTTGCAAAGAACGTTGAGGAAACTTTGCGTGACTTCTGCTTAGTGGAAATCTTCG : 300672 270 : lyCysThrLeuAsnIleCysMetLeuGluTyrTyrMetLeuThr >>>> Target : 284 !! !||||||! !:!:|||:!!|||||||||||| |||..! 97 luSerThrLeuIleLeuCysLeuLeuGluTyrTyrCysLeuVal++ 300673 : AGTCCACGCTGATTTTGTGTTTGCTCGAATACTACTGTTTGGTGgt............ : 300719 285 : Intron 1 >>>> GluAspSerThrGluArgMetAlaThrTyrAlaIleLeuTyrV : 298 9 bp .!...!..!||| !||| !|||!:! !! !|||! . +-AsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuT 300720 : .............aaAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAA : 301738 299 : alSerMetIlePheAsnIlePheIlePheCysTyrIleGlyGluLysLeuThrThrGl : 317 .!|||.!.! !|||||||||||||||||||||||||||||||||! |||:!! !|| hrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGl 301739 : CGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACA : 301795 318 : n >>>> Target Intron 2 >>>> CysLeuGlnValGlyGluLysAlaTyrM : 327 | 80 bp ||| !|||:!!|||..! !:!!||| n++ ++CysSerGlnIleGlySerAlaSerTyrG 301796 : Ggt.........................agTGTAGCCAAATTGGTTCAGCATCGTACG : 301905 328 : etThrGlnTrpTyrArgLeuProHisLysThrAlaThrGlyLeuIleLeuLeuIleSe : 346 !! !.!.||||||!.!|||||| |||! !||| !! !||||||||||||! ! luIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerVa 301906 : AGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGT : 301962 347 : rArgSerArgMetValThrArgIleThrAlaGlyLysLeuLeuProIleSerIleSer : 365 !! !|||!:! ! !!!:!:!!||||||||||||:!!:!! !:!!|||:!:!:! lIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsn 301963 : GATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAAT : 302019 366 : ThrPheGlyAspValSerIle : 372 ||||||.!!..!|||!:!:!! ThrPheSerSerValAsnVal 302020 : ACATTCAGCTCTGTAAATGTC : 302042 vulgar: Lalb_14627 249 372 . KQ414889.1 300614 302042 + 222 M 34 102 5 0 2 I 0 975 3 0 2 M 34 102 5 0 2 I 0 76 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300615 302042 222 + . gene_id 18 ; sequence Lalb_14627 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300615 300716 . + . KQ414889.1 exonerate:protein2genome:local exon 300615 300716 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300717 300718 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300717 301695 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301694 301695 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 301696 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301696 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302042 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302042 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300615 302042 222 + . alignment_id 18 ; Query Lalb_14627 ; Align 300615 250 102 ; Align 301696 284 102 ; Align 301878 318 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 2 -> 197 Target range: 294690 -> 295275 3 : SerValGlnValAsnArgTrpPheLeuLysProIleGlyIleTrpPro<->IleGlyP : 21 |||:!!:!! ! !||| !!.!.|||||||||||||||:!!|||||| ||| ! SerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrS 294691 : AGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACA : 294748 22 : roAspAlaThrArgSerGluArgIlePheSerSerLeuLeuAsnIleAlaCysHisSe : 40 ! !!.!!!:!!:! !.!.!:!:!!.!!|||! !:!!|||! ! !||| ! erHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLe 294749 : GTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTT : 294805 41 : rLeuValValPheThrPheAlaProCysValMetPheIleLeuPheGluGluThrSer : 59 ! !|||:!!|||..!!!.!.!||||||! ! ||| !:!!|||.!.! ::: uThrValLeuPheValLeuValProCysGlyTyrPheCysValPheHisValLysAsn 294806 : GACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaac : 294862 60 : LeuAspAlaArgIleGlnAlaIleGlyProMetSerHisTrpLeuMetGlyGluLeuA : 79 ::: ::!!!::!! !:!:||||||:!: !:!!! :!!:!:..! !|||! ValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuA 294863 : gtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCA : 294922 80 : snTyrCysCysLeuSerPheArgThrAsnAspIlePheArgCysIleArgHisMetLy : 98 ..||| !!|||||| !!!.!:!||| !! .!! !.!||||||..! !!!!::! rgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCysIleGluAspIleGl 294923 : GGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGA : 294979 99 : sThrAspTrpLysThrIleGluLysSerSerAspArgGluLeuMetLeuLysAspAla : 117 !!.!||||||||| !|||!!:!!. !!..! !!|||! !:!!|||:!!|||:!!||| uAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIleMetIleLysAsnAla 294980 : GAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCG : 295036 118 : LysValGlyArgSerIleAlaThrIleAlaAlaValCysMetAsnLeuGlyValPheS : 137 ! !||| !!:!!!!!!:.!!..! ! !.!!:!! !!: !! !..!!.! ! | MetValThrGlnArgMetThrValAlaPheThrIleIleIleTyrSerSerAlaValS 295037 : ATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGT : 295096 138 : erTyrAsnPheValThrGlyPheGlnLysLeuGluPheHisValGlyAsnAspThrTy : 156 |||||:!! !:!!... ||| ... !!..!. ..!!!. ! !.! ! erTyrHisAlaIleValProPhePheSerAsnAlaLeuGlu---AsnLysLysAsnAs 295097 : CGTATCACGCCATTGtgccatttttttcaaacgctTTGGAG---AACAAGAAGAATAA : 295150 157 : rSerMetLeuArgLeuProCysProPheTyrSerAsnLeuMetAspValArgHisSer : 175 !!!!!!:! ! !|||||| !||| !|||..! !!!:!:|||!.! ! !||| nThrIleArgAlaLeuProIleProGlyTyrGluLeuPheValAspAlaTyrSerSer 295151 : TACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGT : 295207 176 : ProAlaAsnGluIleValTyrPheLeuGlnLeuLeuSerGlyLeuIleValAsnSerV : 195 |||.!! !!||||||:!! !! !! !!!:!!! !..!!!!.!!||||||!.!. ProThrTyrGluIleIleArgThrHisLeuPheValTyrSerPhePheValAsnLysT 295208 : CCTACCTACGAGATCATAAGAACTCATCTCTTTGTTTACTCGTTCTTCGTCAACAAAA : 295267 196 : alThrVal : 197 .! !||| hrGlyVal 295268 : CTGGTGTC : 295275 vulgar: Lalb_14627 2 197 . KQ414889.1 294690 295275 + 205 M 16 48 G 0 3 M 132 396 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294691 295275 205 + . gene_id 19 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294691 295275 . + . KQ414889.1 exonerate:protein2genome:local exon 294691 295275 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294691 295275 205 + . alignment_id 19 ; Query Lalb_14627 ; Align 294691 3 48 ; Align 294742 19 396 ; Align 295138 152 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 194 Query range: 290 -> 372 Target range: 219358 -> 219677 291 : AlaThrTyrAlaIleLeuTyrValSerMetIlePheAsnIlePheIlePheCysTyrI : 310 !.!|||||| !|||||| !:!!|||:!: ||||||||||||||||||||||||| ValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrI 219359 : GTGACATACATCATTCTACTTATATCCCTcactttcaacattttcatattttgctaCA : 219416 311 : leGlyGluLysLeuThrThrGln >>>> Target Intron 1 >>>> CysLeu : 319 ||||||||! :!!.!! !||| 73 bp ||| leGlyGluIleValAlaGluGln++ ++CysArg 219417 : TAGGAGAGATCGTTGCTGAACAggt.........................agTGtagg : 219516 320 : GlnValGlyGluLysAlaTyrMetThrGlnTrpTyrArgLeuProHisLysThrAlaT : 339 ::::::|||||| :!!||||||! !:!!|||||||||||| !! |||! ! ! LysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysLysL 219517 : aaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAAAGC : 219576 340 : hrGlyLeuIleLeuLeuIleSerArgSerArgMetValThrArgIleThrAlaGlyLy : 358 ! !! !:!!||| !|||:!!! !|||!.! !! !!:!:!:|||||||||!! euTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAs 219577 : TCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGGAAA : 219633 359 : sLeuLeuProIleSerIleSerThrPheGlyAspValSerIle : 372 .:!!:!! !:!:||||||||||||||| !|||||||||||| nMetValGluLeuSerIleSerThrPheThrAspValSerIle 219634 : TATGGTCGAATTGTCTATCAGCACTTTTACCGACGTGAGtatc : 219677 vulgar: Lalb_14627 290 372 . KQ414889.1 219358 219677 + 194 M 27 81 5 0 2 I 0 69 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219359 219677 194 + . gene_id 20 ; sequence Lalb_14627 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 219359 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219359 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219677 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219677 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219359 219677 194 + . alignment_id 20 ; Query Lalb_14627 ; Align 219359 291 81 ; Align 219513 318 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 179 Query range: 0 -> 227 Target range: 194168 -> 194840 1 : AsnTyrSerValGlnValAsnArgTrpPheLeuLysProIleGlyIleTrpProIleG : 20 .!.|||:!!|||!:!||| !:! !.!!|||! !||||||||||||||||||! ! GluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProArgG 194169 : GAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAAGGG : 194226 21 : lyProAspAlaThrArgSerGluArgIlePheSerSerLeuLeuAsnIleAlaCysHi : 39 ! !..! ! ! !!!!! |||:!:|||:!!..! !.! !!.! ! luAspSerLeuArgAspArgValArgLeuPheAlaGln------ThrGlyValValPh 194227 : AGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAA------ACTGGCGTGGTCTT : 194277 40 : sSerLeuValValPheThrPheAlaProCysValMetPheIleLeuPheGluGluThr : 58 !:!!|||:!! !||| !.!.!.!||| !|||!!:!:!! !! !|||!!: ! eAlaLeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCysGlu 194278 : CGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAG : 194334 59 : SerLeuAspAlaArgIleGlnAlaIleGlyProMetSerHisTrpLeuMetGlyGluL : 78 ..!||| ! !!!::!!!.!|||!.! !!... ! ! ! |||:!!!.! : AspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleI 194335 : GATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCA : 194394 79 : euAsnTyrCysCysLeuSerPheArgThrAsnAspIlePheArgCysIleArgHisMe : 97 !!!!.!:!!! :!!! ! ! !.!! !!!.!!:||| !|||:!:! !.!.|| leLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGluMe 194395 : TCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGAT : 194451 98 : tLysThrAspTrpLysThrIleGluLysSerSerAspArgGluLeuMetLeuLysAsp : 116 |:!!|||.!.!::!:! !:!:||| ..!..!||||||:!!:!!||| !!!. ! tGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsnCys 194452 : GGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGC : 194508 117 : AlaLysValGlyArgSerIleAlaThrIleAlaAlaValCysMetAsnLeuGlyValP : 136 ||||||:!!||||||! !.!!.!!|||:!: ! !! ! ! !! !|||!.!! AlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaL 194509 : GCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTT : 194568 137 : heSerTyrAsnPheValThrGlyPheGlnLysLeuGluPheHisValGlyAsnAspTh : 155 !. !!|||:!!.!!:!! ! !.!...!..! ||| !||| !.!.|||!. euProTyrHisIleIleLeuProLeuMetSer---GluArgIleValLysGluAspAs 194569 : TGCCGTACCACATTATTCTACCTCTGATGTCG---GAGAGGATTGTCAAGGAGGATAA : 194622 156 : rTyrSerMetLeuArgLeuProCysProPheTyrSerAsnLeuMetAspValArgHis : 174 ! !!!!..!:!!! !||||||! ! ! ! !!! ! !!!!.!.! :!!..! !! nSerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAsp 194623 : CAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGAC : 194679 175 : SerProAlaAsnGluIleValTyrPheLeuGlnLeuLeuSerGlyLeuIleValAsnS : 194 |||||| ! !!||||||..!!:! !!! !|||:!!|||! !.!! !|||:!! | SerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuS 194680 : TCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGT : 194739 195 : erValThrValGlyAlaCysGlyMetAlaGlyValPheAlaMetHisAlaCysGlyGl : 213 ||..!!.! !||| !! !.!!:!!!.!!.!..!.!! !||||||..!|||||| erThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGlyLe 194740 : CGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTT : 194796 214 : nLeuAsnValIleThrSerGlnLeuAsnAsnLeuValThrPro : 227 !!!!.!.|||! !!:!!!!::!:!!.!.!.!:!! !..!||| uPheGluValThrSerArgArgMetGluThrIleSerValPro 194797 : GTTCGAAGTGACCAGCAGAAGGATGGAGACTATTTCTGTGCCC : 194840 vulgar: Lalb_14627 0 227 . KQ414889.1 194168 194840 + 179 M 32 96 G 2 0 M 112 336 G 1 0 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194169 194840 179 + . gene_id 21 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194169 194840 . + . KQ414889.1 exonerate:protein2genome:local exon 194169 194840 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 194169 194840 179 + . alignment_id 21 ; Query Lalb_14627 ; Align 194169 1 96 ; Align 194265 35 336 ; Align 194601 148 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 173 Query range: 316 -> 371 Target range: 244655 -> 244820 317 : GlnCysLeuGlnValGlyGluLysAlaTyrMetThrGlnTrpTyrArgLeuProHisL : 336 |||||||||:!!||||||||| !!.!|||||||||.!.|||||| !||||||!!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 337 : ysThrAlaThrGlyLeuIleLeuLeuIleSerArgSerArgMetValThrArgIleTh : 355 :!! ! ! !! !|||||||||:!!|||!.!||||||!.!||||||..!..!||||| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 356 : rAlaGlyLysLeuLeuProIleSerIleSerThrPheGlyAspValSer : 371 ||||||||||:!!|||! !!!:|||:!!! !|||||||||||||||||| rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSer 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGT : 244820 vulgar: Lalb_14627 316 371 . KQ414889.1 244655 244820 + 173 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244820 173 + . gene_id 22 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244820 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244820 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244820 173 + . alignment_id 22 ; Query Lalb_14627 ; Align 244656 317 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 316 -> 371 Target range: 238625 -> 238790 317 : GlnCysLeuGlnValGlyGluLysAlaTyrMetThrGlnTrpTyrArgLeuProHisL : 336 |||||||||:!!||||||||| !!.!|||||||||.!.|||||| !||||||!!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 337 : ysThrAlaThrGlyLeuIleLeuLeuIleSerArgSerArgMetValThrArgIleTh : 355 :!! ! ! !! !|||||||||:!!|||!.!||||||!.!:!!|||..!!:!:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 356 : rAlaGlyLysLeuLeuProIleSerIleSerThrPheGlyAspValSer : 371 ||||||||||:!!|||! !!!:|||:!!! !|||||||||||||||||| rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSer 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGT : 238790 vulgar: Lalb_14627 316 371 . KQ414889.1 238625 238790 + 170 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238790 170 + . gene_id 23 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238790 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238790 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238790 170 + . alignment_id 23 ; Query Lalb_14627 ; Align 238626 317 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 300 -> 370 Target range: 272966 -> 273176 301 : IlePheAsnIlePheIlePheCysTyrIleGlyGluLysLeuThrThrGlnCysLeuG : 320 |||:::||| ! ! !! |||::: :::||| ::: |||||| : IleTyrAsnArgArgArgAspLeuTyrLeuProLysLysAsnSer***GlnCysLysL 272967 : atatacaaTCGAAGACGTGATTTATACttaccgaagaaaaattcttaacagtgtaaaa : 273024 321 : lnValGlyGluLysAlaTyrMetThrGlnTrpTyrArgLeuProHisLysThrAlaTh : 339 :::::|||||| !!.!|||||||||.!.|||||| !|||||| !||| ! ! ysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProGlyLysAspIleLe 273025 : aaattggcGAGGTAGTTTACATGACGAACTGGTACTATTTACCCGGCAAAGATATCCT : 273081 340 : rGlyLeuIleLeuLeuIleSerArgSerArgMetValThrArgIleThrAlaGlyLys : 358 !! !|||||||||:!!|||||||||!!!!!!:!:|||! !!:!||||||||||||!:! uAspLeuIleLeuIleIleSerArgCysSerValValIleLysIleThrAlaGlyArg 273082 : CGATCTGATTTTGATCATCTCAAGATGCAGTGTTGTGATTAAAATCACCGCTGGCAGG : 273138 359 : LeuLeuProIleSerIleSerThrPheGlyAspVal : 370 :!!:!!|||!!:|||:!:! !||||||||||||||| IleValProMetSerValTyrThrPheGlyAspVal 273139 : ATAGTTCCCATGTCTGTGTACACGTTCGGCGATGTA : 273176 vulgar: Lalb_14627 300 370 . KQ414889.1 272966 273176 + 170 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272967 273176 170 + . gene_id 24 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272967 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 272967 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272967 273176 170 + . alignment_id 24 ; Query Lalb_14627 ; Align 272967 301 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 169 Query range: 289 -> 370 Target range: 291395 -> 292551 290 : MetAlaThrTyrAlaIleLeuTyrValSerMetIlePheAsnIlePheIlePheCysT : 309 !!: !||||||!.!! !||| !..!|||.!.! !|||||||||.!.|||||||||| IleLeuThrTyrValThrLeuLeuThrSerPheThrPheAsnIleLeuIlePheCysT 291396 : ATATTAACATACGTCACTCTCCTCACTTCTTTCACTTTCAACATACTGATATTCTGTT : 291453 310 : yrIleGlyGluLysLeuThrThrGln >>>> Target Intron 1 >>>> Cys : 318 ||:!!|||||| ||| ! !||| 913 bp !! yrValGlyGluLeuLeuLeuGlyGln++ ++Gly 291454 : ACGTTGGCGAACTTCTTCTTGGACAGgt.........................agGGT : 292393 319 : LeuGlnValGlyGluLysAlaTyrMetThrGlnTrpTyrArgLeuProHisLysThrA : 338 !:!!:!!!.!.!. :!!||| |||:!!||||||!.!||||||...::!! !| SerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgArgLysA 292394 : AGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGG : 292453 339 : laThrGlyLeuIleLeuLeuIleSerArgSerArgMetValThrArgIleThrAlaGl : 357 || !! !:!!:!!|||:!!:!!:!!! !!!!!:! !! !!:!:!!|||||||| laArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuThrAlaGl 292454 : CTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGG : 292510 358 : yLysLeuLeuProIleSerIleSerThrPheGlyAspVal : 370 ||||:!!!!! !:!!|||:!:!:!|||||||||! !||| yLysIlePheValLeuSerLeuAsnThrPheGlyAlaVal 292511 : CAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTA : 292551 vulgar: Lalb_14627 289 370 . KQ414889.1 291395 292551 + 169 M 28 84 5 0 2 I 0 909 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291396 292551 169 + . gene_id 25 ; sequence Lalb_14627 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291396 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291396 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292551 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291396 292551 169 + . alignment_id 25 ; Query Lalb_14627 ; Align 291396 290 84 ; Align 292393 318 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 168 Query range: 316 -> 370 Target range: 277551 -> 277713 317 : GlnCysLeuGlnValGlyGluLysAlaTyrMetThrGlnTrpTyrArgLeuProHisL : 336 |||||| !:!!||||||||| !!.!|||||||||.!.|||||| !|||||| !!| GlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAspL 277552 : CAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCGACA : 277609 337 : ysThrAlaThrGlyLeuIleLeuLeuIleSerArgSerArgMetValThrArgIleTh : 355 || ! ! !..!|||:!!|||:!!||||||||||||!!!:::||| :::||||| ysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIleTh 277610 : AAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaattac : 277666 356 : rAlaGlyLysLeuLeuProIleSerIleSerThrPheGlyAspVal : 370 |||||||||||||::: :::|||:!:! !||||||||||||||| rAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspVal 277667 : cgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTA : 277713 vulgar: Lalb_14627 316 370 . KQ414889.1 277551 277713 + 168 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277552 277713 168 + . gene_id 26 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277552 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277552 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277552 277713 168 + . alignment_id 26 ; Query Lalb_14627 ; Align 277552 317 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 316 -> 371 Target range: 254271 -> 254436 317 : GlnCysLeuGlnValGlyGluLysAlaTyrMetThrGlnTrpTyrArgLeuProHisL : 336 |||||||||:!!||||||||| !!.!|||||||||.!.|||||| !||||||!!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 337 : ysThrAlaThrGlyLeuIleLeuLeuIleSerArgSerArgMetValThrArgIleTh : 355 :!! ! ! !! !|||||||||:!!|||!!!||||||!.!:!!|||..!..!||||| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 356 : rAlaGlyLysLeuLeuProIleSerIleSerThrPheGlyAspValSer : 371 ||||||||||:::... :::|||:!!! !|||||||||||||||||| rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSer 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGT : 254436 vulgar: Lalb_14627 316 371 . KQ414889.1 254271 254436 + 167 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254436 167 + . gene_id 27 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254436 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254436 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254436 167 + . alignment_id 27 ; Query Lalb_14627 ; Align 254272 317 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 0 -> 144 Target range: 299686 -> 300120 1 : AsnTyrSerValGlnValAsnArgTrpPheLeuLysProIleGlyIleTrpPro<->I : 19 :!!|||!!!:!!|||:!! !!:!|||!!.|||||||||||||||:!!|||! ! : HisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpArgLeuL 299687 : CATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGCGATTGC : 299744 20 : leGlyProAspAlaThrArgSerGluArgIlePheSerSerLeuLeuAsnIleAlaCy : 38 !!! !! ! !:!!!:!!:! !|||!.!:!! !!|||! !:!!|||! ! ! !|| euAspGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMetThrIleCy 299745 : TAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATGACAATATG : 299801 39 : sHisSerLeuValValPheThrPheAlaProCysValMetPheIleLeuPheGluGlu : 57 | !||| !:!! !!|||! ! !! !|||! !! ! !:!|||!!!|||! !||| sPheSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePhePheAlaGlu 299802 : CTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCTTCGCGGAG : 299858 58 : ThrSerLeuAspAlaArgIleGlnAlaIleGlyProMetSerHisTrpLeuMetGlyG : 77 ! !|||:!! !!!.!!:!:!::!!!.!.!!||||||:!:.!! !!! ||| ..! LysSerIleHisValLysValLysValPheGlyProValGlyPheCysLeuSerSerI 299859 : AAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCA : 299918 78 : luLeuAsnTyrCysCysLeuSerPheArgThrAsnAspIlePheArgCysIleArgHi : 96 :!!!!.||||||! !|||!!!.!.!.! !..!! .!! |||||||||!:!|| leValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCysIleGlnHi 299919 : TCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGCATCCAACA : 299975 97 : sMetLysThrAsp--TrpLysThrIleGluLysSerSerAspArgGluLeuMetLeuL : 115 |:!::!!! !|||## ... |||!:! !!||| !:!!||||||! sValGluArgAsp##---UnkUnkUnkUnkUnkSerAsnHisArgThrIleMetLeuA 299976 : CGTCGAGAGAGACNN---NNNNNNNNNNNNNNTTCGAATCATCGTACGATCATGTTGA : 300031 116 : ysAspAlaLysValGlyArgSerIleAlaThrIleAlaAlaValCysMetAsnLeuGl : 134 :! !!!.!! :!!.!!|||!:!:!:.!!|||:!:..!||||||! !:!: !! !|| rgTyrValThrMetSerArgAsnLeuThrThrValCysAlaValPheLeuTyrAlaGl 300032 : GATACGTGACTATGAGCAGAAATCTGACGACCGTGTGCGCCGTGTTTCTTTACGCAGG : 300088 135 : yValPheSerTyrAsnPheValThrGlyPhe : 144 |! !.!.||||||:!! |||! ! !||| yGlyMetSerTyrHisThrValMetGlnPhe 300089 : TGGTATGTCGTATCACACGGTGATGCAGTTC : 300120 vulgar: Lalb_14627 0 144 . KQ414889.1 299686 300120 + 160 M 18 54 G 0 3 M 82 246 F 0 2 G 1 0 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299687 300120 160 + . gene_id 28 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299687 300120 . + . KQ414889.1 exonerate:protein2genome:local exon 299687 300120 . + . insertions 3 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local similarity 299687 300120 160 + . alignment_id 28 ; Query Lalb_14627 ; Align 299687 1 54 ; Align 299744 19 246 ; Align 299992 102 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 316 -> 371 Target range: 258462 -> 258627 317 : GlnCysLeuGlnValGlyGluLysAlaTyrMetThrGlnTrpTyrArgLeuProHisL : 336 |||||| !:!!||||||!!: !!.!|||||||||.!.|||||| !|||||| !!| GlnCysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspL 258463 : CAGTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACA : 258520 337 : ysThrAlaThrGlyLeuIleLeuLeuIleSerArgSerArgMetValThrArgIleTh : 355 ||! ! ! !! !|||||||||:!!|||:!!||||||!!!:!!|||..!!:!||||| ysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleTh 258521 : AAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCAC : 258577 356 : rAlaGlyLysLeuLeuProIleSerIleSerThrPheGlyAspValSer : 371 ||||||||||...... :::||||||! !||||||.!!||||||||| rAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAspValSer 258578 : CGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATGTGAGT : 258627 vulgar: Lalb_14627 316 371 . KQ414889.1 258462 258627 + 153 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258463 258627 153 + . gene_id 29 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 258463 258627 . + . KQ414889.1 exonerate:protein2genome:local exon 258463 258627 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258463 258627 153 + . alignment_id 29 ; Query Lalb_14627 ; Align 258463 317 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 317 -> 372 Target range: 287063 -> 287228 318 : CysLeuGlnValGlyGluLysAlaTyrMetThrGlnTrpTyrArgLeuProHisLysT : 337 ||||||:!!|||||| !..!.!!||||||! !.!.||||||||||||||| |||| CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysT 287064 : tGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAA : 287121 338 : hrAlaThrGlyLeuIleLeuLeuIleSerArgSerArgMetValThrArgIleThrAl : 356 ||||| !||||||||||||:!!.!!:!! !|||!.! !! !!:!:!!||||| hrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 287122 : CAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 287178 357 : aGlyLysLeuLeuProIleSerIleSerThrPheGlyAspValSerIle : 372 |||||||:!!:!! !:!!|||:!!|||!:!||| !!..!||||||||| aGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIle 287179 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATC : 287228 vulgar: Lalb_14627 317 372 . KQ414889.1 287063 287228 + 150 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287064 287228 150 + . gene_id 30 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287064 287228 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287228 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287064 287228 150 + . alignment_id 30 ; Query Lalb_14627 ; Align 287064 318 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 316 -> 370 Target range: 264723 -> 264885 317 : GlnCysLeuGlnValGlyGluLysAlaTyrMetThrGlnTrpTyrArgLeuProHisL : 336 |||||| !:!!||||||||| !!.!||||||:!!.!.|||||| !||||||:!!| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 337 : ysThrAlaThrGlyLeuIleLeuLeuIleSerArgSerArgMetValThrArgIleTh : 355 || ! ! !! !|||||||||:!!|||! !||||||!!!:!!||| !!:!.!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 356 : rAlaGlyLysLeuLeuProIleSerIleSerThrPheGlyAspVal : 370 ||||||||||:!!|||! !!!:|||!!:! !||||||.!!|||||| rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: Lalb_14627 316 370 . KQ414889.1 264723 264885 + 147 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264885 147 + . gene_id 31 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264885 147 + . alignment_id 31 ; Query Lalb_14627 ; Align 264724 317 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 158 -> 252 Target range: 202682 -> 202966 159 : LeuArgLeuProCysProPheTyrSerAsnLeuMetAspValArgHisSerProAlaA : 178 |||!!!:!! !!! ! !!|||! .!! !:!!!!:|||||||||:!!||||||!.!| LeuSerValThrPheSerPheSerGlyPheIleIleAspValArgTyrSerProValA 202683 : CTTAGTGTGACGTTCTCCTTCTCAGGATTTATCATTGATGTTAGATACAGTCCTGTGA : 202740 179 : snGluIleValTyrPheLeuGlnLeuLeuSerGlyLeuIleValAsnSerValThrVa : 197 |||||||| !!!:!! :!!!:!:!!:!!:!!! !:!!:!!:!!:!!.!!|||||||| snGluIlePhePheSerIleArgIleValAlaValIleLeuIleHisGlyValThrVa 202741 : ACGAGATCTTCTTCTCGATTCGAATCGTAGCTGTCATCCTAATTCACGGTGTCACTGT : 202797 198 : lGlyAlaCysGlyMetAlaGlyValPheAlaMetHisAlaCysGlyGlnLeuAsnVal : 216 |||||||||| !!:!!.!!!.!:!!||||||:!:|||! !|||||||||:!!:!!||| lGlyAlaCysCysLeuThrAlaLeuPheAlaValHisAspCysGlyGlnMetAspVal 202798 : AGGAGCTTGTTGCTTGACAGCGTTGTTTGCGGTTCACGATTGCGGCCAGATGGACGTT : 202854 217 : IleThrSerGlnLeuAsnAsnLeuValThrProAsnGluGluGlnThr--PheAlaLy : 235 :!:! !:!! !|||.!.:!!|||:!! ! !..!..!!!:..!!:!## !!.!!! LeuMetAlaTrpLeuGluHisLeuMetAspGlyArgSerAspMetSer##AsnValAs 202855 : TTGATGGCCTGGCTGGAACATTTGATGGATGGTCGTTCGGATATGAGTAAAATGTGAA : 202913 236 : sLysLysLeuThrSerIleValGluArgHisLeuArgThrLeuAsnPheVal : 252 . !:!:!!..!!!!||||||...!:!|||:!!|||! !|||!!.! !||| nGlyArgMetValThrIleValSerGlnHisIleArgIleLeuLysCysVal 202914 : TGGCAGAATGGTGACCATCGTGAGCCAACACATACGGATACTGAAATGTGTG : 202966 vulgar: Lalb_14627 158 252 . KQ414889.1 202682 202966 + 146 M 74 222 F 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202683 202966 146 + . gene_id 32 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202683 202966 . + . KQ414889.1 exonerate:protein2genome:local exon 202683 202966 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local similarity 202683 202966 146 + . alignment_id 32 ; Query Lalb_14627 ; Align 202683 159 222 ; Align 202907 233 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 317 -> 372 Target range: 280276 -> 280441 318 : CysLeuGlnValGlyGluLysAlaTyrMetThrGlnTrpTyrArgLeuProHisLysT : 337 ||||||:!!||||||! !..!.!!||||||! !.!.||||||||||||||| |||! CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysL 280277 : TGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGA : 280334 338 : hrAlaThrGlyLeuIleLeuLeuIleSerArgSerArgMetValThrArgIleThrAl : 356 !||| !||||||||||||:!!.!!:!! !|||!.! !! !!:!:!!||||| ysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 280335 : AAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 280391 357 : aGlyLysLeuLeuProIleSerIleSerThrPheGlyAspValSerIle : 372 |||||||:!!:!! !:!!|||:!!|||!:!||| !!..!||||||||| aGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIle 280392 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATC : 280441 vulgar: Lalb_14627 317 372 . KQ414889.1 280276 280441 + 145 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280277 280441 145 + . gene_id 33 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280277 280441 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280441 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280277 280441 145 + . alignment_id 33 ; Query Lalb_14627 ; Align 280277 318 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 309 -> 372 Target range: 230223 -> 230412 310 : IleGlyGluLysLeuThrThrGlnCysLeuGlnValGlyGluLysAlaTyrMetThrG : 329 ||| :::... ::! !|||||| !:!!||||||||||||:!!||||||! !: Ile***LysAsnAlaSerLeuGlnCysArgLysValGlyGluLysSerTyrMetIleG 230224 : atttaaaaaaatgcttcCTTACAGTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCG : 230281 330 : lnTrpTyrArgLeuProHisLysThrAlaThrGlyLeuIleLeuLeuIleSerArgSe : 348 !!|||||||||||| !! !!.! ! ! ! !!! !||||||:!!|||:!!! !|| luTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 230282 : AATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTC : 230338 349 : rArgMetValThrArgIleThrAlaGlyLysLeuLeuProIleSerIleSerThrPhe : 367 |!.! !|||!:!.!!|||||||||!!.:!!:!! !:!!|||:!!!:!|||||| rAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnThrPhe 230339 : CAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACACTTTC : 230395 368 : GlyAspValSerIle : 372 .!!|||||||||||| SerAspValSerIle 230396 : AGCGACGTAAGTATC : 230412 vulgar: Lalb_14627 309 372 . KQ414889.1 230223 230412 + 142 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230224 230412 142 + . gene_id 34 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230224 230412 . + . KQ414889.1 exonerate:protein2genome:local exon 230224 230412 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230224 230412 142 + . alignment_id 34 ; Query Lalb_14627 ; Align 230224 310 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 313 -> 372 Target range: 214851 -> 215028 314 : LeuThrThrGlnCysLeuGlnValGlyGluLysAlaTyrMetThrGlnTrpTyrArgL : 333 :!! ! !|||||| !:!!||||||||| !:!!||||||! !:!!|||||||||| MetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrArgL 214852 : ATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACCGAT : 214909 334 : euProHisLysThrAlaThrGlyLeuIleLeuLeuIleSerArgSerArgMetValTh : 352 ||||| !!!.! ! ! ! !!! !||||||:!!!!::!!! !|||!.! !.. euProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSerVa 214910 : TGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATCCGT : 214966 353 : rArgIleThrAlaGlyLysLeuLeuProIleSerIleSerThrPheGlyAspValSer : 371 !!:!.!!|||||||||!!.:!!:!! !:!:|||||||||||||||.!!..!|||||| lLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerValSer 214967 : CAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTAAGT : 215023 372 : Ile : 372 ||| Ile 215024 : ATC : 215028 vulgar: Lalb_14627 313 372 . KQ414889.1 214851 215028 + 133 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214852 215028 133 + . gene_id 35 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214852 215028 . + . KQ414889.1 exonerate:protein2genome:local exon 214852 215028 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214852 215028 133 + . alignment_id 35 ; Query Lalb_14627 ; Align 214852 314 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 316 -> 370 Target range: 283276 -> 283438 317 : GlnCysLeuGlnValGlyGluLysAlaTyrMetThrGlnTrpTyrArgLeuProHisL : 336 |||||| !:!!||||||||| !!.!|||||||||.!.! !!:! !|||||| !!| GlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProAspL 283277 : CAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCGACA : 283334 337 : ysThrAlaThrGlyLeuIleLeuLeuIleSerArgSerArgMetValThrArgIleTh : 355 || ! ! !..!|||:!!|||:!!||||||||||||!!!:::||| :::||||| ysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIleTh 283335 : AAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaattac : 283391 356 : rAlaGlyLysLeuLeuProIleSerIleSerThrPheGlyAspVal : 370 ||||...||||||::: :::||| ! !||||||! !|||||| rAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspVal 283392 : cgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTA : 283438 vulgar: Lalb_14627 316 370 . KQ414889.1 283276 283438 + 132 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283277 283438 132 + . gene_id 36 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283277 283438 . + . KQ414889.1 exonerate:protein2genome:local exon 283277 283438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283277 283438 132 + . alignment_id 36 ; Query Lalb_14627 ; Align 283277 317 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 319 -> 371 Target range: 305630 -> 305786 320 : GlnValGlyGluLysAlaTyrMetThrGlnTrpTyrArgLeuProHisLysThrAlaT : 339 ...|||||| !.....!!:!|||! !...||||||!.!|||||| !|||||| ! SerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleH 305631 : AGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATAC : 305688 340 : hrGlyLeuIleLeuLeuIleSerArgSerArgMetValThrArgIleThrAlaGlyLy : 358 !||||||||||||:!!|||:!!! !|||!!!! !.!!!:!|||!:!|||||||| isGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLy 305689 : ATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAA : 305745 359 : sLeuLeuProIleSerIleSerThrPheGlyAspValSer : 371 |:!!:!! !:!!|||:!!||||||||||||:!!|||||| sValValAspLeuSerLeuSerThrPheGlyAsnValSer 305746 : AGTAGTTGATTTATCTTTATCCACATTTGGAAACGTGAGT : 305786 vulgar: Lalb_14627 319 371 . KQ414889.1 305630 305786 + 132 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305631 305786 132 + . gene_id 37 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305631 305786 . + . KQ414889.1 exonerate:protein2genome:local exon 305631 305786 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305631 305786 132 + . alignment_id 37 ; Query Lalb_14627 ; Align 305631 320 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 248 -> 287 Target range: 279906 -> 280023 249 : LeuAsnPheValTrpTyrIleGluLysIleMetHisMetIleCysLeuValGluLeuM : 268 !!!!:!|||:!!! ! ! |||||| !:!!:!!:!! ||||||!!!||||||:!!! PheSerPheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValI 279907 : TTCAGTTTTATATCGCAAATCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTGA : 279964 269 : etGlyCysThrLeuAsnIleCysMetLeuGluTyrTyrMetLeuThrGluAspSerTh : 287 !:|||||||||||||||||||||.!.||| !||||||:!:||||||! ! ..!|| leGlyCysThrLeuAsnIleCysPheLeuThrTyrTyrLeuLeuThrValThrGluTh 279965 : TTGGTTGCACGTTGAACATATGCTTTTTGACATATTATTTACTCACGGTAACAGAGAC : 280021 288 : r : 287 | r 280022 : G : 280023 vulgar: Lalb_14627 248 287 . KQ414889.1 279906 280023 + 113 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 279907 280023 113 + . gene_id 38 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 279907 280023 . + . KQ414889.1 exonerate:protein2genome:local exon 279907 280023 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 279907 280023 113 + . alignment_id 38 ; Query Lalb_14627 ; Align 279907 249 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 320 -> 372 Target range: 206251 -> 206407 321 : ValGlyGluLysAlaTyrMetThrGlnTrpTyrArgLeuProHisLysThrAlaThrG : 340 |||||| !! !:!!! !! !..!.!.|||||||||||||||:!!!:! !||| !. ValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgS 206252 : GTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCT : 206309 341 : lyLeuIleLeuLeuIleSerArgSerArgMetValThrArgIleThrAlaGlyLysLe : 359 .!:!!||||||:!!|||:!!! !|||!.! !! !!:!:!!||||||||||||:! erMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMe 206310 : CTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAAT : 206366 360 : uLeuProIleSerIleSerThrPheGlyAspValSerIle : 372 !!!! !!!:|||:!!:!!!:!||| !|||||||||!!: tPheGluMetSerLeuAlaSerPheThrAspValSerMet 206367 : GTTCGAAATGTCTTTAGCTAGTTTCACCGATGTAAGTATG : 206407 vulgar: Lalb_14627 320 372 . KQ414889.1 206251 206407 + 111 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206252 206407 111 + . gene_id 39 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206252 206407 . + . KQ414889.1 exonerate:protein2genome:local exon 206252 206407 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206252 206407 111 + . alignment_id 39 ; Query Lalb_14627 ; Align 206252 321 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 313 -> 370 Target range: 297632 -> 297803 314 : LeuThrThrGlnCysLeuGlnValGlyGluLysAlaTyrMetThrGlnTrpTyrArgL : 333 :!!:!! !|||..! !:!! !!|||.!. !||||||! ! !:!!||||||!.!| ValSerCysGlnAlaGluLysPheGlyAsnAlaAlaTyrAsnIleGluTrpTyrAsnL 297633 : GTTTCTTGTCAGGCTGAAAAATTCGGCAATGCAGCTTATAACATCGAATGGTACAACT : 297690 334 : euProHisLysThrAlaThrGlyLeuIleLeuLeuIleSerArgSerArgMetValTh : 352 |||||! !!.! !||| !! !|||:!:|||:!!|||.!!! !:!!!:!.!. ! ! euProProAsnArgAlaLeuAspLeuValLeuMetIleGlyIleAlaLysPheProPr 297691 : TACCGCCAAACAGGGCTCTCGATCTGGTGTTAATGATCGGTATAGCAAAATTTCCACC : 297747 353 : rArgIleThrAlaGlyLysLeuLeuProIleSerIleSerThrPheGlyAspVal : 370 !|||:!!|||...||||||:::... |||||||||!:!||||||.!!! !||| oArgLeuThrGlyGlyLysIlePheAspIleSerIleAsnThrPheSerAlaVal 297748 : GAGGCTCACAggtggaaaaatattcgatatatCGATAAACACGTTCAGTGCCGTA : 297803 vulgar: Lalb_14627 313 370 . KQ414889.1 297632 297803 + 110 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297633 297803 110 + . gene_id 40 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297633 297803 . + . KQ414889.1 exonerate:protein2genome:local exon 297633 297803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297633 297803 110 + . alignment_id 40 ; Query Lalb_14627 ; Align 297633 314 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 290 -> 317 Target range: 214659 -> 214740 291 : AlaThrTyrAlaIleLeuTyrValSerMetIlePheAsnIlePheIlePheCysTyrI : 310 !.!||||||!.!:!:||||||:!!|||::: ||||||||||||||||||||||||| ValThrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrI 214660 : GTAACTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCA : 214717 311 : leGlyGluLysLeuThrThrGln : 317 |||||||| :!!:!! !||| leGlyGluLeuValSerGluGln 214718 : TAGGCGAGCTTGTGTCTGAACAG : 214740 vulgar: Lalb_14627 290 317 . KQ414889.1 214659 214740 + 101 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214660 214740 101 + . gene_id 41 ; sequence Lalb_14627 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214660 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214660 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214660 214740 101 + . alignment_id 41 ; Query Lalb_14627 ; Align 214660 291 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1166 Query range: 0 -> 382 Target range: 217153 -> 219677 1 : AsnTyrLysLysAspValAspLeuSerIleLysTrpAsnArgTrpIleLeuLysProM : 20 .!.|||:::|||:::::::::|||||||||:!!||||||||||||:!:|||||||||| GluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProM 217154 : GAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGA : 217211 21 : etGlyValTrpProArgSerArgHisValSerGlnArgGluValCysLeuAsnTrpLe : 39 |||||:!!||||||!.!|||||| !..!!!!::! !..! ! !||| !! || etGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLe 217212 : TGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACT : 217268 40 : uIleAsnAlaValCysTyrSerLeuIleSerPheLeuPheAlaProGlyTyrLeuTyr : 58 ||||||||||:!!||||||.!!||||||||||||||||||!.!||| !!! !:!!||| uIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyr 217269 : GATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTAC : 217325 59 : ValSerLeuGluValGluGluValTyrAspLysLeuLysLeuTyrGlyProLeuMetP : 78 |||! !||||||||||||!!::!!||||||||||||||||||!:!|||||||||!!:| ValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIleP 217326 : GTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCT : 217385 79 : heTyrValMetAlaTyrIleLysTyrTyrSerLeuMetAlaHisThrAsnAspIleAr : 97 ||! !|||||||||!:!:!!|||||||||||||||!!:!.!|||! ! |||||||| heCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleAr 217386 : TCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCG : 217442 98 : gGluCysIleLysCysIleAspCysAspTrpArgAsnValIleHisSerGluAspArg : 116 |||||||:!:!:! ! |||!!: ! |||||||||||||||! ! !..!:!!|||||| gGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArg 217443 : CGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGG : 217499 117 : GluIleMetValAlaAsnAlaIlePheGlyArgArgLeuValLysIleCysThrPheP : 136 ||| |||:!!!.!||||||! !|||||||||!:!|||||| !:!!|||||||||| GluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPheP 217500 : GAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCT : 217559 137 : heMetPheSerGlyPheValPhePheTyrIleAlaValProMetSerAlaGlyLysIl : 155 |||||!:!|||||||||||||||:::|||||||||:!!|||!!:|||!.!|||!:!|| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIl 217560 : TCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAAT : 217616 156 : eAlaIleGluGlyThrAsnArgThrPheIleProLeuAlaPheProValSerLysLeu : 174 | ! |||..! !|||! !|||||||||||||||!.!|||||| !!!!!|||! ! eLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyr 217617 : TCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTAT : 217673 175 : IleValAspThrGlnArgAsnProSerAsnGlnIlePhePheSerIleGlnLeuPheG : 194 |||:!!||||||!:: !!.!|||!!!|||:!!||| ! |||! !:!!||||||.!!! IleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleA 217674 : ATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCG : 217733 195 : lyGlyMetLeuIleHisSerIleAlaAlaGlyValCysCysLeuAlaValAlaPheAl : 213 .!||| |||!!:|||.!!|||.!!:!!!.!!.!||| !!||||||!.!|||||||| laGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAl 217734 : CTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGC : 217790 214 : aValHisAlaCysGlyGlnMetGlnValLeuMetCysTrpMetSerHisLeuValAsp : 232 |||||||||||||||||||!!::!!||||||||| !|||:!!..!||||||:!!||| aValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAsp 217791 : GGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGAC : 217847 233 : GlyArgValAspMetSerAsnThrThrAsnGlyArgIleAlaLysIleValAsnGlnH : 252 ||||||!.!|||||||||:!!|||..!:!!||||||||||||!..||||||!:!|||| GlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnH 217848 : GGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAAC : 217907 253 : isValArgIleGln{Ly} >>>> Target Intron 1 >>>> {s}PheLeuTh : 260 ||||||||||| !{||} 1229 bp {|}|||||||| isValArgIleLeu{Ly}++ ++{s}PheLeuTh 217908 : ACGTTCGGATATTA{AA}gt.........................ag{a}tttttgaC : 219160 261 : rValMetGluLysAlaLeuThrGlnAlaSerLeuValGluLeuLeuGlyCysThrVal : 279 |:!!! |||!:!.!!||| !||| !|||!!!!.!|||!!!||||||||||||:!! rLeuThrGluArgThrLeuGlnGlnIleSerPheAlaGluPheLeuGlyCysThrMet 219161 : GCTCACAGAGAGAACCCTCCAGCAAATCTCTTTCGCTGAATTTCTAGGATGCACCATG : 219217 280 : GlyIleCysLeuLeuGlyTyrTyrIleIleVal >>>> Target Intron 2 >> : 291 ! !|||||||||:!!|||||||||||||||||| 76 bp AspIleCysLeuValGlyTyrTyrIleIleVal++ 219218 : GACATATGTCTCGTTGGATATTACATTATCGTGgt....................... : 219255 292 : >> GluSerArgAlaMetAsnMetThrAlaIleAlaThrTyrAlaMetIleLeuGly : 308 |||!!!!:!:!!! :!!:!:|||::! !!.!|||||| !!!::!!||| ! ++GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIle 219256 : ..agGAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATA : 219380 309 : SerLeuIlePheAsnIlePheIlePheCysTyrIleGlyGluLeuValAspAspGln : 328 |||||| |||||||||||||||||||||||||||||||||:!!|||! !!!:||| SerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln+ 219381 : TCCCTcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAgg : 219440 329 : >>>> Target Intron 3 >>>> TyrArgLysValGlyGlnMetSerTyrMet : 337 73 bp ! ||||||:::|||:::|||||||||||| + ++CysArgLysIleGlyGluMetSerTyrMet 219441 : t.........................agTGtaggaaaattggagaaatgtCGTACATG : 219540 338 : IleAspTrpTyrArgLeuProLysAsnThrLysLeuSerValValLeuIleMetAlaM : 357 |||!!:|||||||||||| !! !!!.! !||||||!!! !||||||! !!!:|||| IleGluTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaM 219541 : ATCGAATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTA : 219600 358 : etSerSerLeuProThrLysLeuThrAlaGlyArgLeuValLysLeuSerLeuAlaSe : 376 |||||!:!! ! !!! !|||||||||||||||!.!:!!|||:!!||||||:!!::!!! etSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerTh 219601 : TGTCGAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCAC : 219657 377 : rPheSerAsnValSerIle : 382 !|||!!!:!!||||||||| rPheThrAspValSerIle 219658 : TTTTACCGACGTGAGtatc : 219677 vulgar: Lalb_14629 0 382 . KQ414889.1 217153 219677 + 1166 M 256 768 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 37 111 5 0 2 I 0 69 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217154 219677 1166 + . gene_id 1 ; sequence Lalb_14629 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217154 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217154 217923 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219677 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219677 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217154 219677 1166 + . alignment_id 1 ; Query Lalb_14629 ; Align 217154 1 768 ; Align 219154 258 99 ; Align 219329 291 111 ; Align 219513 328 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1074 Query range: 0 -> 382 Target range: 212851 -> 215028 1 : AsnTyrLysLysAspValAspLeuSerIleLysTrpAsnArgTrpIleLeuLysProM : 20 !.!|||:!!||| |||:::||||||||| !||||||||||||:!!|||||||||! ThrTyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProT 212852 : ACCTACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAA : 212909 21 : etGlyValTrpProArgSerArgHisValSerGlnArgGluValCysLeuAsnTrpLe : 39 !|||:!!|||||| !!.! !:!!||||||! !! !||| ! !:!! ! ! || hrGlyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIleAlaArgLe 212910 : CGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATT : 212966 40 : uIleAsnAlaValCysTyrSerLeuIleSerPheLeuPheAlaProGlyTyrLeuTyr : 58 |:!!|||.!!|||||||||.!!||||||.!!!:!||| ! !||| !! !|||||| uValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyr 212967 : GGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTAC : 213023 59 : ValSerLeuGluValGluGluValTyrAspLysLeuLysLeuTyrGlyProLeuMetP : 78 |||! !|||!!:||||||...:::::: ::::!!:!!|||!:!||| !!!! | ValPheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheAlaP 213024 : GTGTTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTGCAT : 213083 79 : heTyrValMetAlaTyrIleLysTyrTyrSerLeuMetAlaHisThrAsnAspIleAr : 97 ||! !||| ||| ||||||:!!||||||!!: !||| !:!!|||||||| heCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleAr 213084 : TTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCG : 213140 98 : gGluCysIleLysCysIleAspCysAspTrpArgAsnValIleHisSerGluAspArg : 116 | !|||:!!:!! !!!: ! ! !||||||!:!|||:!!! |||..!||||||!:! gThrCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLys 213141 : TACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAA : 213197 117 : GluIleMetValAlaAsnAlaIlePheGlyArgArgLeuValLysIleCysThrPheP : 136 |||||||||!.! !||||||! !||||||!:!|||:!!|||! !||||||.!!|||| GluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPheP 213198 : GAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCT : 213257 137 : heMetPheSerGlyPheValPhePheTyrIleAlaValProMetSerAlaGlyLysIl : 155 |||||!:!!!!||||||..!|||!:!!:!:!!!.!||||||!!:||||||! !|||!! heMetTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLysMe 213258 : TCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAAT : 213314 156 : eAlaIleGluGlyThrAsnArgThrPheIleProLeuAlaPheProValSerLysLeu : 174 :!.! |||! ! !||| !||||||! !! !:!!!.! !!|||||||||!:!!!! tValAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSerArgPhe 213315 : GGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTT : 213371 175 : IleValAspThrGlnArgAsnProSerAsnGlnIlePhePheSerIleGlnLeuPheG : 194 |||||||||..!!:! !!:!||| !|||:!!|||||||||! !||||||:!!.!.! IleValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleIleA 213372 : ATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAG : 213431 195 : lyGlyMetLeuIleHisSerIleAlaAlaGlyValCysCysLeuAlaValAlaPheAl : 213 .!|||:!:|||||||||:!!||||||!.!! !!.!||| !!||||||!.!!.!||||| laGlyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPheAl 213432 : CTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGC : 213488 214 : aValHisAlaCysGlyGlnMetGlnValLeuMetCysTrpMetSerHisLeuValAsp : 232 |||||||||||||||||||||| :!!|||||| !!|||:!!..!||||||:!!||| aValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAsp 213489 : GGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGAC : 213545 233 : GlyArgValAspMetSerAsnThrThrAsnGlyArgIleAlaLysIleValAsnGlnH : 252 ||||||! !|||||||||!!.!.!..!:!!! !||||||||| ||||||||||||| GlyArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleValAsnGlnH 213546 : GGTAGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGC : 213605 253 : isValArgIleGln{Ly} >>>> Target Intron 1 >>>> {s}PheLeuTh : 260 |||||||||||! !{||} 840 bp {|}|||||| isValArgIleLeu{Ly}++ ++{s}PheLeuGl 213606 : ATGTGCGGATACTG{AA}gt.........................ag{A}TTCTTAGA : 214469 261 : rValMetGluLysAlaLeuThrGlnAlaSerLeuValGluLeuLeuGlyCysThrVal : 279 !:!!:!!|||||||||||| !|||!.!|||!!!!.!|||||||||! !||||||||| uLeuValGluLysAlaLeuArgGlnValSerPheAlaGluLeuLeuValCysThrVal 214470 : GCTCGTGGAGAAAGCACTTCGGCAAGTATCTTTCGCTGAATTATTAGTATGCACGGTG : 214526 280 : GlyIleCysLeuLeuGlyTyrTyrIleIleVal >>>> Target Intron 2 >> : 291 ..!:!!||||||:!!|||||||||||||||..! 68 bp AsnLeuCysLeuValGlyTyrTyrIleIleThr++ 214527 : AATCTCTGTCTCGTTGGATATTACATAATAACGgt....................... : 214564 292 : >> GluSerArgAlaMetAsnMetThrAlaIleAlaThrTyrAlaMetIleLeuGly : 308 |||!!!!.!:!!! |||:!:|||.!!! !!.!||||||!.!:!!:!:! ! ! ++GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValValLeuTyrIle 214565 : ..aggAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGGTGTTGTATATC : 214681 309 : SerLeuIlePheAsnIlePheIlePheCysTyrIleGlyGluLeuValAspAspGln : 328 |||||| |||||||||||||||||||||||||||||||||||||||..!!!:||| SerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValSerGluGln+ 214682 : TCTCtcactttcaatattttcatattttgttaCATAGGCGAGCTTGTGTCTGAACAGg : 214741 329 : >>>> Target Intron 3 >>>> TyrArgLysValGlyGlnMetSerTyrMet : 337 123 bp ! !!:!|||||||||:!!:!:||||||||| + ++CysLysLysValGlyGluValSerTyrMet 214742 : t.........................agTGCAAAAAGGTCGGAGAAGTATCGTACATG : 214891 338 : IleAspTrpTyrArgLeuProLysAsnThrLysLeuSerValValLeuIleMetAlaM : 357 |||!!:||||||||||||||| |||! !||||||!!! !:!!||||||||||||| IleGluTrpTyrArgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaM 214892 : ATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAA : 214951 358 : etSerSerLeuProThrLysLeuThrAlaGlyArgLeuValLysLeuSerLeuAlaSe : 376 |||||!:!! ! !!..!|||!!!|||||||||!.!:!!|||:!!||||||:!!::!!! etSerAsnSerSerValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerTh 214952 : TGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCAC : 215008 377 : rPheSerAsnValSerIle : 382 !||||||!:!||||||||| rPheSerSerValSerIle 215009 : TTTCAGCAGTGTAAGTATC : 215028 vulgar: Lalb_14629 0 382 . KQ414889.1 212851 215028 + 1074 M 256 768 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 M 33 99 5 0 2 I 0 64 3 0 2 M 37 111 5 0 2 I 0 119 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212852 215028 1074 + . gene_id 2 ; sequence Lalb_14629 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212852 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 212852 213621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215028 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215028 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212852 215028 1074 + . alignment_id 2 ; Query Lalb_14629 ; Align 212852 1 768 ; Align 214463 258 99 ; Align 214630 291 111 ; Align 214864 328 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1027 Query range: 0 -> 387 Target range: 226909 -> 230427 1 : AsnTyrLysLysAspValAspLeuSerIleLysTrpAsnArgTrpIleLeuLysProM : 20 :!!|||:!!:!! !!:!!:!!|||||||||:!!! !|||||||||:!:|||||||||: AspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProL 226910 : GACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCAC : 226967 21 : etGlyValTrpProArgSerArgHisValSerGlnArgGluValCysLeuAsnTrpLe : 39 !:|||:!!|||||| !|||||| ! !|||!:!! !! ! !|||!!!::!||||| euGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLe 226968 : TCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTT : 227024 40 : uIleAsnAlaValCysTyrSerLeuIleSerPheLeuPheAlaProGlyTyrLeuTyr : 58 |!!:..! !:!!||||||:!!|||!!:|||||| !!!.!.! !!.!! !|||||| uMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyr 227025 : GATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTAC : 227081 59 : ValSerLeuGluValGluGluValTyrAspLysLeuLysLeuTyrGlyProLeuMetP : 78 ||| !|||||||||:!!! !.!|||:!!! !||||||:!! !||||||:!! | ValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerP 227082 : GTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCT : 227141 79 : heTyrValMetAlaTyrIleLysTyrTyrSerLeuMetAlaHisThrAsnAspIleAr : 97 ||!:!!.!|||:!! !:!!||||||! !! !|||! ! !||| !:!!||||||! hePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLe 227142 : TCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCT : 227198 98 : gGluCysIleLysCysIleAspCysAspTrpArgAsnValIleHisSerGluAspArg : 116 !||||||:!!:!! ! ||| ! !! ||||||!:!|||:!!! !:!! !||||||||| uGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArg 227199 : CGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGA : 227255 117 : GluIleMetValAlaAsnAlaIlePheGlyArgArgLeuValLysIleCysThrPheP : 136 .!.:!:||||||.!! !!||| !!:!||||||!:!|||:!!! ||||||||||||| AsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPheP 227256 : AACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTT : 227315 137 : heMetPheSerGlyPheValPhePheTyrIleAlaValProMetSerAlaGlyLysIl : 155 ||:!:||||||...||||||||||||||||||!.!||||||!!:!:!||||||!..:! heValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerVa 227316 : TCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGT : 227372 156 : eAlaIleGluGlyThrAsnArgThrPheIleProLeuAlaPheProValSerLysLeu : 174 !|||! |||! ! !|||!.!!:!!:!|||! !:!! !!|||||| !! !!|||:!! lAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIle 227373 : TGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATC : 227429 175 : IleValAspThrGlnArgAsnProSerAsnGlnIlePhePheSerIleGlnLeuPheG : 194 |||!.!|||..!!:: !!:!|||! !|||:!!||||||||||||:!!|||!!! ! IleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValT 227430 : ATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAA : 227489 195 : lyGlyMetLeuIleHisSerIleAlaAlaGlyValCysCysLeuAlaValAlaPheAl : 213 !|||!!::!!:!:|||.!!:!!.!!:!!!.!!.!||| !!:!!|||!.! !.!!|| hrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAl 227490 : CAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGC : 227546 214 : aValHisAlaCysGlyGlnMetGlnValLeuMetCysTrpMetSerHisLeuValAsp : 232 ||||||||||||||||||||||:!!||||||:!!! !|||:!!.!!||||||:!!||| aValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAsp 227547 : GGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGAC : 227603 233 : GlyArgValAspMetSerAsnThrThrAsnGlyArgIleAlaLysIleValAsnGlnH : 252 ||||||!.!|||||||||!!.||| !:!!! !|||||||||!..||||||!.!!!.| GlyArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValThrHisH 227604 : GGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACC : 227663 253 : isValArgIleGln{Ly} >>>> Target Intron 1 >>>> {s}PheLeuTh : 260 ||||||||||| !{!!} 396 bp {.}||||||.! isValArgIleLeu{As}++ ++{n}PheLeuAl 227664 : ACGTTCGAATATTG{AA}gt.........................ag{C}TTTCTGGC : 228083 261 : rValMetGluLysAlaLeuThrGlnAlaSerLeuValGluLeuLeuGlyCysThrVal : 279 !:!!!!:||||||.!!:!! !||| !:!!!!!||||||!!!||||||||||||:!! aLeuIleGluLysThrMetGlnGlnIleAlaPheValGluPheLeuGlyCysThrIle 228084 : CCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGTACAATA : 228140 280 : GlyIleCysLeuLeuGlyTyrTyrIleIleVal >>>> Target Intron 2 >> : 291 !:!:||||||:!!! !||||||||||||..! 72 bp IleLeuCysLeuIleGluTyrTyrIleIleThr++ 228141 : ATTCTGTGCCTCATCGAGTATTACATCATAACGgt....................... : 228178 292 : >> GluSerArgAlaMetAsnMetThrAlaIleAlaThrTyrAlaMetIleLeuGly : 308 |||!!!!.! !!! .!.:!:||| ! !!.!||||||:!! !:!!||| ! ++GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeu 228179 : ..agGAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTA : 228299 309 : SerLeuIlePheAsnIlePheIlePheCysTyrIleGlyGluLeuValAspAspGln : 328 |||!!!! |||||||||||||||||||||||||||||||||:!!|||! !!!:!!. SerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluHis+ 228300 : TCCTTTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACg : 228359 329 : >>>> Target Intron 3 >>>> TyrArgLysValGlyGlnMetSerTyrMet : 337 1889 bp ! !||||||||||||:!!! !||||||||| + ++CysArgLysValGlyGluLysSerTyrMet 228360 : t.........................agTGCAGAAAAGTCGGCGAAAAGTCGTACATG : 230275 338 : IleAspTrpTyrArgLeuProLysAsnThrLysLeuSerValValLeuIleMetAlaM : 357 |||!!:|||||||||||| !! !|||! !||||||!!! !:!!||||||!!:|||| IleGluTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaM 230276 : ATCGAATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCA : 230335 358 : etSerSerLeuProThrLysLeuThrAlaGlyArgLeuValLysLeuSerLeuAlaSe : 376 |||||!:!! ! !!||||||!!!|||||||||!.!:!!|||:!!||||||:!! !!! etSerAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnTh 230336 : TGTCCAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACAC : 230392 377 : rPheSerAsnValSerIleValIleLeuLeuTyr : 387 !||||||:!!|||||||||:!!.!!! !:!!||| rPheSerAspValSerIleIlePheSerValTyr 230393 : TTTCAGCGACGTAAGTATCATATTCTCTGTTTAC : 230427 vulgar: Lalb_14629 0 387 . KQ414889.1 226909 230427 + 1027 M 256 768 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226910 230427 1027 + . gene_id 3 ; sequence Lalb_14629 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226910 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226910 227679 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230427 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230427 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226910 230427 1027 + . alignment_id 3 ; Query Lalb_14629 ; Align 226910 1 768 ; Align 228077 258 99 ; Align 228248 291 111 ; Align 230248 328 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 900 Query range: 0 -> 382 Target range: 208191 -> 211938 1 : AsnTyrLysLysAspValAspLeuSerIleLysTrpAsnArgTrpIleLeuLysProM : 20 |||||||||!!.|||:!!..!!!!!:!:!!::: !||| !|||! |||||| !! AsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuLysIleI 208192 : AACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGAAGATAA : 208249 21 : etGlyValTrpProArgSerArgHisValSerGlnArgGluValCysLeuAsnTrpLe : 39 !:||| !||||||||||||! ! !! !||| ! !||| ! !!! !:!! || leGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHisIleLe 208250 : TCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCATATTCT : 208306 40 : uIleAsnAlaValCysTyrSerLeuIleSerPheLeuPheAlaProGlyTyrLeuTyr : 58 |:!!|||!.!:!! !!:!!!!!|||:!!.!!|||:!! ! !||| ! !:!!!:! uLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGlyMetPhe 208307 : CTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATGTTC : 208363 59 : ValSerLeuGluValGluGluValTyrAspLysLeuLysLeuTyrGlyProLeuMetP : 78 !.!! !|||! !||||||!!: !!||||||:!!||||||:!!! !.!! !!|||! | AlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaLeuSerP 208364 : GCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTCTGAGCT : 208423 79 : heTyrValMetAlaTyrIleLysTyrTyrSerLeuMetAlaHisThrAsnAspIleAr : 97 ||!:!:!!||||||!:!! |||||| ! !:!!! !.!!.! !..!|||||||| hePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAspIleAr 208424 : TCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGACATACG : 208480 98 : gGluCysIleLysCysIleAspCysAspTrpArgAsnValIleHisSerGluAspArg : 116 |:!!|||:!!:!!! !:!!!!:..!||||||||||||||| |||..!||||||||| gLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGluAspArg 208481 : GAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAGGACAGG : 208537 117 : GluIleMetValAlaAsnAlaIlePheGlyArgArgLeuValLysIleCysThrPheP : 136 :!!||||||:!!! !||||||! !|||!.!|||!:!|||:!! !|||||| ! !| LysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysGlyAlaP 208538 : AAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCGGAGCTT : 208597 137 : heMetPheSerGlyPheValPhePheTyrIleAlaValProMetSerAlaGlyLysIl : 155 |||||!:!.!!||| :::|||:::|||||||||:!!|||:!:!!! !! !|||:! heMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAspLysVa 208598 : TCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGACAAGGT : 208654 156 : eAlaIleGluGlyThrAsnArgThrPheIleProLeuAlaPheProValSerLysLeu : 174 !!.! |||||| !||| !|||!:!! ! !|||!.!!:!|||||| !!|||!!! lValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValProLysPhe 208655 : CGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCTAAGTTC : 208711 175 : IleValAspThrGlnArgAsnProSerAsnGlnIlePhePheSerIleGlnLeuPheG : 194 |||:!!|||..!!:! !!:!||| !|||:!!||||||!:!!!!:!!||||||!!.. IleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnLeuLeuS 208712 : ATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAATTGTTGT : 208771 195 : lyGlyMetLeuIleHisSerIleAlaAlaGlyValCysCysLeuAlaValAlaPheAl : 213 .!|||.!.:!! !|||!:!|||.!!!.!|||!.!||| !!||||||!.! !.!!|| erGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLeuLeuAl 208772 : CGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCTGCTCGC : 208828 214 : aValHisAlaCysGlyGlnMetGlnValLeuMetCysTrpMetSerHisLeuValAsp : 232 |:!!|||||||||||||||:!!|||:!!||||||! !||||||..! ! ||||||||| aMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeuValAsp 208829 : GATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTGGTCGAT : 208885 233 : GlyArgValAspMetSerAsnThrThrAsnGlyArgIleAlaLysIleValAsnGlnH : 252 ||||||! !||| !..!!!.!.! !:!! !|||:!:|||!!.||||||.!.|||| GlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleValGluGlnH 208886 : GGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCGTGGAGCAGC : 208945 253 : isValArgIleGln{Ly} >>>> Target Intron 1 >>>> {s}PheLeuTh : 260 ||||||||:!: {!!} 1536 bp {.}|||:!!.! isValArgValIle{As}++ ++{n}PheIleAl 208946 : ATGTTCGAGTGATC{AA}gt.........................ag{T}TTTATAGC : 210505 261 : rValMetGluLysAlaLeuThrGlnAlaSerLeuValGluLeuLeuGlyCysThrVal : 279 !:!!! |||!!. !||| !:!! !||||||:!!|||:!!:!!|||||||||:!! aLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGluMetValGlyCysThrLeu 210506 : TCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAATGGTGGGGTGCACTCTG : 210562 280 : GlyIleCysLeuLeuGlyTyrTyrIleIleVal >>>> Target Intron 2 >> : 291 ..!!!:|||!!!||||||||||||! !!::!! 66 bp AsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210563 : AACATGTGTTTCCTTGGCTATTACACGATGATTgt....................... : 210600 292 : >> GluSerArgAlaMetAsnMetThrAlaIleAlaThrTyrAlaMetIleLeuGly : 308 |||!!! !:!!! :!! ! !::!! ! !|||||| !:!::!!||| ! ++GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValLeuLeuThr 210601 : ..agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTACTCCTCACT : 210715 309 : SerLeuIlePheAsnIlePheIlePheCysTyrIleGlyGluLeuValAspAspGln : 328 |||:!!! |||||||||||||||||||||||||||||||||:!!:!!! !!!:||| SerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAlaGluGln+ 210716 : TCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGCTGAACAgg : 210775 329 : >>>> Target Intron 3 >>>> TyrArgLysValGlyGlnMetSerTyrMet : 337 999 bp !|||||||||:!!! !||||||||| + ++ThrValLysValGlyGluLysSerTyrMet 210776 : t.........................agACAGTAAAAGTTGGAGAAAAGTCTTACATG : 211801 338 : IleAspTrpTyrArgLeuProLysAsnThrLysLeuSerValValLeuIleMetAlaM : 357 |||||||||||||||:!!||| !!!.! ! ||| !||| !|||!!:!!::!!| IleAspTrpTyrArgMetProGlyLysLysGlyLeuValValProLeuMetIleSerM 211802 : ATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGATGATCTCCA : 211861 358 : etSerSerLeuProThrLysLeuThrAlaGlyArgLeuValLysLeuSerLeuAlaSe : 376 ||||| !! ! !!||||||:!!|||||||||!.!|||:!! ||||||:!!::!|| etSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleValLeuSerIleSerSe 211862 : TGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTTCTTTCAATCAGTAG : 211918 377 : rPheSerAsnValSerIle : 382 ||||.!!:!!||||||::: rPheGlyAspValSerVal 211919 : TTTCGGTGACGTAAGtgtt : 211938 vulgar: Lalb_14629 0 382 . KQ414889.1 208191 211938 + 900 M 256 768 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 995 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208192 211938 900 + . gene_id 4 ; sequence Lalb_14629 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208192 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208192 208961 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211938 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211938 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208192 211938 900 + . alignment_id 4 ; Query Lalb_14629 ; Align 208192 1 768 ; Align 210499 258 99 ; Align 210664 291 111 ; Align 211774 328 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 853 Query range: 0 -> 259 Target range: 221357 -> 222134 1 : AsnTyrLysLysAspValAspLeuSerIleLysTrpAsnArgTrpIleLeuLysProM : 20 :!!||||||! !:!!||| ! ||||||:!::!!! !!:!||||||||||||||||||! AspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProI 221358 : GATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGA : 221415 21 : etGlyValTrpProArgSerArgHisValSerGlnArgGluValCysLeuAsnTrpLe : 39 !:||||||||||||!.!||| !:!!:!!||| ! !||| !! !||| !!||||| leGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLe 221416 : TCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 40 : uIleAsnAlaValCysTyrSerLeuIleSerPheLeuPheAlaProGlyTyrLeuTyr : 58 |||||||!.!||||||||||||||||||!!!||||||!!.!.!||| !! !|||||| uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 59 : ValSerLeuGluValGluGluValTyrAspLysLeuLysLeuTyrGlyProLeuMetP : 78 |||! !||||||||||||!!:||||||:!!!:!:!!||||||! |||||||||! | ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 79 : heTyrValMetAlaTyrIleLysTyrTyrSerLeuMetAlaHisThrAsnAspIleAr : 97 ||! !|||||||||!:!:!!||||||:!! !|||!!: !:!! !||||||||||| heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 98 : gGluCysIleLysCysIleAspCysAspTrpArgAsnValIleHisSerGluAspArg : 116 ||||||||||:!! !!|||!!:!! ||||||!:!|||:!!! !:!!|||:!!|||!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 117 : GluIleMetValAlaAsnAlaIlePheGlyArgArgLeuValLysIleCysThrPheP : 136 !!:||||||:!!! !||||||||||||||||||||||||:!!! !||||||||||||| AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 137 : heMetPheSerGlyPheValPhePheTyrIleAlaValProMetSerAlaGlyLysIl : 155 |||||!:!|||||||||||||||:::|||||||||:!!|||.!.|||!.!|||||||| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 156 : eAlaIleGluGlyThrAsnArgThrPheIleProLeuAlaPheProValSerLysLeu : 174 | !! :!!! !...||| ||||||||||||:!!!.!|||||| !!|||!:!!!! eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 175 : IleValAspThrGlnArgAsnProSerAsnGlnIlePhePheSerIleGlnLeuPheG : 194 ||||||||||||!:! !!:!||| !|||:!!|||.!.||||||:!!|||:!!.!.! IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 195 : lyGlyMetLeuIleHisSerIleAlaAlaGlyValCysCysLeuAlaValAlaPheAl : 213 .!||| |||!!:|||||||||.!!:!!!.!!.!||| !!|||!.!!.! !||||| laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 214 : aValHisAlaCysGlyGlnMetGlnValLeuMetCysTrpMetSerHisLeuValAsp : 232 |||||||||||||||||||||||||||||||||| !!|||:!!!.!||||||:!!:!! aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 233 : GlyArgValAspMetSerAsnThrThrAsnGlyArgIleAlaLysIleValAsnGlnH : 252 ||||||!.!||||||!!!|||!.!..!:!! !!||||||||||||||||||||||||| GlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnH 222052 : GGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAAC : 222111 253 : isValArgIleGlnLysPheLeu : 259 ||||||||||| !:!!!:!:!! isValArgIleLeuGlnTyrVal 222112 : ACGTTCGAATATTGCAGTATGTA : 222134 vulgar: Lalb_14629 0 259 . KQ414889.1 221357 222134 + 853 M 259 777 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221358 222134 853 + . gene_id 5 ; sequence Lalb_14629 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221358 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221358 222134 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221358 222134 853 + . alignment_id 5 ; Query Lalb_14629 ; Align 221358 1 777 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 597 Query range: 8 -> 387 Target range: 284526 -> 287243 9 : SerIleLysTrpAsnArgTrpIleLeuLysProMetGlyValTrpProArgSerArgH : 28 |||:!!:!! !|||||||||.!!|||||||||!!:||||||||||||! !|||! ! SerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuC 284527 : AGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCT : 284584 29 : isValSerGlnArgGluValCysLeuAsnTrpLeuIleAsnAlaValCysTyrSerLe : 47 !|||!!! !||| ! ! !::! !:!!:!! !:!! !!! !! !|| ysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLe 284585 : GCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCT : 284641 48 : uIleSerPheLeuPheAlaProGlyTyrLeuTyrValSerLeuGlu<->ValGluGlu : 65 ||||.!!||||||!!.!.!||| !! !|||! !..! !|||!!: ..!! !!: uIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAsp 284642 : GATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGAT : 284698 66 : ValTyrAspLysLeuLysLeuTyrGlyProLeuMetPheTyrValMetAlaTyrIleL : 85 :!! !! |||:!!|||:!! !|||||||||! |||! !:!!|||||| |||| LeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleL 284699 : CTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCA : 284758 86 : ysTyrTyrSerLeuMetAlaHisThrAsnAspIleArgGluCysIleLysCysIleAs : 104 ||||||||! !|||!!::!!!.! !..! ! ||| !!:!!|||:!:||| !||| ysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIleAr 284759 : AGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCG : 284815 105 : pCysAspTrpArg<->AsnValIleHisSer<-><->GluAspArgGluIleMetVal : 120 !...|||||| ! !..:!! |||||| |||:::|||||||||||| ! gAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMetArg 284816 : TGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTGAGG : 284872 121 : AlaAsnAlaIlePheGlyArgArgLeuValLysIleCysThrPhePheMetPheSerG : 140 ! !!:!|||! !.!!|||||| !|||!.!! .!!|||.!! !||||||!:!|||| AspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerG 284873 : GACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCG : 284932 141 : lyPheValPhePheTyrIleAlaValProMetSerAlaGlyLysIleAlaIleGluGl : 159 || !!|||!:! !! !.!:!!|||:!!!!!.!!! !:::! ! !||| lyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIle-- 284933 : GAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCATC-- : 284989 160 : yThrAsnArgThrPheIleProLeuAlaPheProValSerLysLeuIleValAspThr : 178 !|||..!||| ! ! ! !!! !|||||||||:!!! !::: !:!!:!!||| !! -AspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 284990 : -GACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCG : 285043 179 : GlnArgAsnProSerAsnGlnIlePhePheSerIleGlnLeuPheGlyGlyMetLeuI : 198 !::! !!:!|||||| !:!!||| ! ! !!!:|||! !!!.!.!!.!.!.:!!| ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValI 285044 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTA : 285103 199 : leHisSerIleAlaAlaGlyValCysCysLeuAlaValAlaPheAlaValHisAlaCy : 217 ||:!!|||:!!.!!!.!|||!.!||| !!||||||!.!!.!|||!.!:!!|||!.!|| leTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCy 285104 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTG : 285160 218 : sGlyGlnMetGlnValLeuMetCysTrpMetSerHisLeuValAspGlyArgValAsp : 236 |||||||.!.::!:!!|||:!! !:!!..! ! |||||||||||| ! !! sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLysGly 285161 : TGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGG : 285217 237 : MetSer<-><->AsnThrThrAsnGlyArgIleAlaLysIleValAsnGlnHisValA : 254 ! !!.! !:!||| !.!. !|||:!:!.! ! |||:!!.!.!!.|||:!!! ArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuL 285218 : AGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGA : 285277 255 : rgIleGln{Ly} >>>> Target Intron 1 >>>> {s}PheLeuThrValMe : 262 :!|||! !{ } 1411 bp { }|||:!!:!! !!! ysIleLeu{Gl}++ ++{y}PheIleSerGlnIl 285278 : AGATACTG{GG}gt.........................ag{T}TTTATATCGCAAAT : 286712 263 : tGluLysAlaLeuThrGlnAlaSerLeuValGluLeuLeuGlyCysThrValGlyIle : 281 :||| ! !|||!.!:!! !!!!!!!||||||:!!:!!|||||||||:!!..!||| eGluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsnIle 286713 : CGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATA : 286769 282 : CysLeuLeuGlyTyrTyrIleIleVal >>>> Target Intron 2 >>>> Gl : 291 |||!!!||||||||||||:!!:!:..! 80 bp || CysPheLeuGlyTyrTyrLeuLeuThr++ ++Gl 286770 : TGCTTTTTGGGATATTATTTACTGACGgt.........................agGA : 286879 292 : uSerArgAlaMetAsnMetThrAlaIleAlaThrTyrAlaMetIleLeuGlySerLeu : 310 |!!!..! !! .!.! ! !!.!! !||||||..!! !:!:|||! !|||!!! uTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerPhe 286880 : ATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTC : 286936 311 : IlePheAsnIlePheIlePheCysTyrIleGlyGluLeuValAspAspGln >>>> : 328 ! ||||||:!!||||||.!!|||||||||||||||:!!:!!..!!!:||| ThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286937 : ACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt..... : 286992 329 : Target Intron 3 >>>> TyrArgLysValGlyGlnMetSerTyrMetIleAsp : 339 74 bp ! !||||||||| ! !!!|||||||||||| ++CysLeuLysValGlyLeuSerThrTyrMetIleAsp 286993 : ....................agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGAC : 287097 340 : TrpTyrArgLeuProLysAsnThrLysLeuSerValValLeuIleMetAlaMetSerS : 359 ||||||||||||||| !!!.||| ! !.!!:!!:!!||||||.!.|||:!!|||! TrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerA 287098 : TGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGA : 287157 360 : erLeuProThrLysLeuThrAlaGlyArgLeuValLysLeuSerLeuAlaSerPheSe : 378 :!! ! !!! !|||||||||||||||!:!:!!:!! ! |||||||||::!||||||!! snSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCy 287158 : ATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTG : 287214 379 : rAsnValSerIleValIleLeuLeuTyr : 387 !!:!|||||||||:!!! !|||! !||| sSerValSerIleIleAsnLeuSerTyr 287215 : CAGCGTGAGTATCATAAATTTATCCTAT : 287243 vulgar: Lalb_14629 8 387 . KQ414889.1 284526 287243 + 597 M 54 162 G 0 3 M 46 138 G 0 3 M 5 15 G 0 6 M 45 135 G 1 0 M 79 237 G 0 6 M 18 54 S 0 2 5 0 2 I 0 1407 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284527 287243 597 + . gene_id 6 ; sequence Lalb_14629 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284527 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284527 285287 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286698 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287243 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287243 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284527 287243 597 + . alignment_id 6 ; Query Lalb_14629 ; Align 284527 9 162 ; Align 284692 63 138 ; Align 284833 109 15 ; Align 284854 114 135 ; Align 284989 160 237 ; Align 285232 239 54 ; Align 286700 258 99 ; Align 286879 291 111 ; Align 287064 328 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 528 Query range: 0 -> 331 Target range: 256631 -> 258387 1 : AsnTyrLysLysAspValAspLeuSerIleLysTrpAsnArgTrpIleLeuLysProM : 20 |||!:!|||!.. !! !|||! !|||:!!:!!! !|||||||||.!!|||||||||! AsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 256632 : AATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTA : 256689 21 : etGlyValTrpProArgSerArgHisValSerGlnArgGluValCysLeuAsnTrpLe : 39 !:|||!.!||||||! !||| ! !..!!!! ! !||| ! !:!!::: :! leGlyAlaTrpProProSerSerSerThrThrThrLeuGluArgAsnValSerIleVa 256690 : TAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGT : 256746 40 : uIleAsnAlaValCysTyrSerLeuIleSerPheLeuPheAlaProGlyTyrLeuTyr : 58 !:!:||| !|||||||||.!!! !|||! !||| !!!. !||| !!! |||:!! lLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIleProCysLeuLeuHis 256747 : TTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCAT : 256803 59 : ValSerLeuGluValGluGluValTyrAspLysLeuLysLeuTyrGlyProLeuMetP : 78 |||! !|||!!:! !!!:... !!||| |||:::||| :::||||||:!!! ValPheLeuAspAspAspSerPheTyrMetLysValLysAsnPheGlyProMetSerH 256804 : GTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCC : 256863 79 : heTyrValMetAlaTyrIleLysTyrTyrSerLeuMetAlaHisThrAsnAspIleAr : 97 !!:::!!!!:::!! ! !!!.||| ! !|||:!! !!!. !!!.|||||||| isTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleAr 256864 : ATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACG : 256920 98 : gGluCysIleLysCysIleAspCysAspTrpArgAsnValIleHisSerGluAspArg : 116 | ! |||:!!:!! !|||!!: |||||||||! |||! .....!:!!|||!:! gTyrCysValGluHisIleGluThrAspTrpArgMetValArgArgGluLysAspGln 256921 : CTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAA : 256977 117 : GluIleMetValAlaAsnAlaIlePheGlyArgArgLeuValLysIleCysThrPheP : 136 :!!:!:|||:!! !||||||! !||||||||| !:!!!.!! !.!!|||.!! !. GlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaI 256978 : CAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTA : 257037 137 : heMetPheSerGlyPheValPhePheTyrIleAlaValProMetSerAlaGlyLysIl : 155 !!||| |||||| |||:::::::!! ! !!:!!!:!.!!! !! !|| leMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAsnThrGluIleIl 257038 : TCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAAT : 257094 156 : eAlaIleGluGlyThrAsnArgThrPheIleProLeuAlaPheProValSerLysLeu : 174 | !:!:! !..! !!..! !! ! ! ! !||| !! !! !!|||! !||| ! eHisValGlyAsnGluThrThrIleValArgValLeuProValThrValTyrLysLys 257095 : TCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAG : 257151 175 : IleValAspThrGlnArgAsnProSerAsnGlnIlePhePheSerIleGlnLeuPheG : 194 :!::!!:!!..!.!.!:!!:!|||!!!|||:!!||| ! !!! !!!:||| !!::. LeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheMetGlnThrTrpS 257152 : CTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGT : 257211 195 : lyGlyMetLeuIleHisSerIleAlaAlaGlyValCysCysLeuAlaValAlaPheAl : 213 .!..!!!::!! !!!!! !.!!!.!.!!:!!! ! !!||||||!.!!.!||||| erSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAlaAlaValPheAl 257212 : CGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGC : 257268 214 : aValHisAlaCysGlyGlnMetGlnValLeuMetCysTrpMetSerHisLeuValAsp : 232 |..!||||||! !||||||:!! |||||||||! |||!!:!!!.!.!!!|||:!! aThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGluPheValAsn 257269 : CACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAAT : 257325 233 : GlyArgValAspMetSerAsnThr<->ThrAsnGlyArgIleAlaLysIleValAsnG : 251 ! ! ! !:!! ......||| ! !!:!|||!.! !||||||.!.! GluSerArgAsnArgGluLysThrPheProPheLysGlnIleGlyValIleValGluH 257326 : GAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGC : 257385 252 : lnHisValArgIleGln{Ly} >>>> Target Intron 1 >>>> {s}PheLe : 259 !.|||:!!|||:!:! !{!.} 76 bp {.}|||:! isHisLeuArgValLeu{Se}++ ++{r}PheIl 257386 : ATCATTTAAGAGTGCTG{AG}gt.........................ag{T}TTCAT : 257485 260 : uThrValMetGluLysAlaLeuThrGlnAlaSerLeuValGluLeuLeuGlyCysThr : 278 !:!! !!!:|||:!!!.!:!!!.!!:! !!!!!!!:!!||||||!!! !!|||||| eSerTyrIleGluGluValMetAsnArgIleCysPheLeuGluLeuPheArgCysThr 257486 : ATCATATATCGAGGAAGTGATGAACCGAATATGTTTTTTAGAGTTGTTTAGATGCACG : 257542 279 : ValGlyIleCysLeuLeuGlyTyrTyrIleIleVal >>>> Target Intron 2 : 291 :!!!.!||||||:!!|||||||||||||||:!!!.! 684 bp LeuAlaIleCysMetLeuGlyTyrTyrIleLeuAla++ 257543 : CTGGCTATATGCATGCTGGGATACTACATTCTTGCGgt.................... : 257583 292 : >>>> GluSerArgAlaMetAsnMetThrAlaIleAlaThrTyrAlaMetIleLeu : 307 |||!!! !.!!...:::::: :::::::::||| !||||||||| ++GluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheMetIleLeu 257584 : .....aggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTATGATACTC : 258313 308 : GlySerLeuIlePheAsnIlePheIlePheCysTyrIleGlyGluLeuValAspAspG : 327 !|||||| ||||||||||||:::...|||||||||||||||:!!:!! !!:| IleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluG 258314 : ATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATTAACAGAAC : 258373 328 : lnTyrArgLysVal : 331 || ! :::::: lnValProGluIle 258374 : AGGTACCagagatt : 258387 vulgar: Lalb_14629 0 331 . KQ414889.1 256631 258387 + 528 M 240 720 G 0 3 M 16 48 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256632 258387 528 + . gene_id 7 ; sequence Lalb_14629 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256632 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256632 257404 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258387 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258387 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256632 258387 528 + . alignment_id 7 ; Query Lalb_14629 ; Align 256632 1 720 ; Align 257355 241 48 ; Align 257482 258 99 ; Align 258265 291 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 511 Query range: 6 -> 330 Target range: 262846 -> 264657 7 : AspLeuSerIleLysTrpAsnArgTrpIleLeuLysProMetGlyValTrpProArgS : 26 |||! !|||:!::!! |||||||||:!:|||||||||!!:|||!.!||||||! !| AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 27 : erArgHisValSerGlnArgGluValCysLeuAsnTrpLeuIleAsnAlaValCysTy : 45 || ! :!!|||::!! !||| ! !:!! !::|||:!!! !!.!|||||||| erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 46 : rSerLeuIleSerPheLeuPheAlaProGlyTyrLeuTyrValSerLeuGluValGlu : 64 |!!!|||||| !! ! ! !! !|||..! |||:!!:!! !||||||!.!||| rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 65 : GluValTyrAspLysLeuLysLeuTyrGlyProLeuMetPheTyrValMetAlaTyrI : 84 .!. !!:!! ||||||:!!:!! !||||||||| !:: !!:!:!.! | AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 85 : leLysTyrTyrSerLeuMetAlaHisThrAsnAspIleArgGluCysIleLysCysIl : 103 ||!!.||| !!!!|||:!! !|||!:!!!.||||||!:!! |||:!::!! !:! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 104 : eAspCysAspTrpArgAsnValIleHisSerGluAspArgGluIleMetValAlaAsn : 122 :.!. |||||| !!! !|||! !...! !||||||!:!...||||||:!! !||| lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 123 : AlaIlePheGlyArgArgLeuValLysIleCysThrPhePheMetPheSerGlyPheV : 142 |||! !!:!|||||| !:!!!.! !|||.!!.!!|||||| !!!.!!.!!: AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 143 : alPhePheTyrIleAlaValProMetSerAlaGlyLysIleAlaIleGluGlyThrAs : 161 !!! ! ! !:!!!.!..! !!.!.!!!.!! ! !|||! ! !! ..! !!. etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 162 : nArgThrPheIleProLeuAlaPheProValSerLysLeuIleValAspThrGlnArg : 180 !|||! !.!. ! !||| !!! !||||||! !||| !|||:!! ..!.!.! ! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 181 : AsnProSerAsnGlnIlePhePheSerIleGlnLeuPheGlyGlyMetLeuIleHisS : 200 ||||||!!!|||:!!||||||.!!:!!! |||!!!.!...!|||.!.:!!:!! !: AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 201 : erIleAlaAlaGlyValCysCysLeuAlaValAlaPheAlaValHisAlaCysGlyGl : 219 !!! !.!!!.!|||!.!! ! !!:!!.!!!.!!.!||||||! !|||||||||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 220 : nMetGlnValLeuMetCysTrpMetSerHisLeuValAsp<->GlyArgValAspMet : 237 |:!!.!.|||||||||! !|||!!:!!!.!.!!!|||:!! ..!|||! !!!:! nLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsn 263484 : GTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAAT : 263540 238 : SerAsnThrThrAsnGlyArgIleAlaLysIleValAsnGlnHisValArgIleGln{ : 257 !.!||| ! ! ! !..!|||!.! !||||||.!.!!.|||:!!|||:!!! !{ LysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeu{ 263541 : AAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTG{ : 263600 258 : Ly} >>>> Target Intron 1 >>>> {s}PheLeuThrValMetGluLysAl : 265 !.} 72 bp {.}|||:!! ! !!!::!!!!.!. Se}++ ++{r}PheIleAspArgIleLysAsnVa 263601 : AG}gt.........................ag{T}TTCATAGATCGTATTAAGAATGT : 263696 266 : aLeuThrGlnAlaSerLeuValGluLeuLeuGlyCysThrValGlyIleCysLeuLeu : 284 !:!!!:! ! !!!!!!!|||||||||!!! !..!|||:!!! !||||||:!!||| lMetSerThrIleCysPheValGluLeuPheLysAlaThrLeuAspIleCysMetLeu 263697 : GATGAGTACGATATGTTTCGTGGAGTTATTCAAGGCTACGCTGGATATATGCATGCTA : 263753 285 : GlyTyrTyrIleIleVal >>>> Target Intron 2 >>>> GluSerArgAl : 294 ||||||||||||:!!..! 764 bp |||!!!..!:: GlyTyrTyrIleLeuThr++ ++GluTrpGluSe 263754 : GGTTACTACATACTTACGgt.........................agGAATGGGAAAG : 264547 295 : aMetAsnMetThrAlaIleAlaThrTyrAlaMetIleLeuGlySerLeuIlePheAsn : 313 ! :::::: :::..!|||||| !||||||||| !|||:!! ! !||| rHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerMetCysGlyAsn 264548 : TCAtgatattcaaaatttgacTACATATTTCATGATACTGATATCAATGTGCGGCAAC : 264604 314 : IlePheIlePheCysTyrIleGlyGluLeuValAspAspGlnTyrArgLys : 330 ||||||:!!.!.|||||||||||||||:!!:!! !!!:||| ||| IlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGlnValIleLys 264605 : ATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcaggtaattaaa : 264657 vulgar: Lalb_14629 6 330 . KQ414889.1 262846 264657 + 511 M 226 678 G 0 3 M 24 72 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 33 99 5 0 2 I 0 760 3 0 2 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 264657 511 + . gene_id 8 ; sequence Lalb_14629 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262847 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263601 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 263673 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263672 263673 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 263674 263773 . + . KQ414889.1 exonerate:protein2genome:local exon 263674 263773 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263774 263775 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263774 264537 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264536 264537 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264538 264657 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264657 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262847 264657 511 + . alignment_id 8 ; Query Lalb_14629 ; Align 262847 7 678 ; Align 263528 233 72 ; Align 263675 258 99 ; Align 264538 291 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 436 Query range: 0 -> 289 Target range: 274362 -> 275306 1 : AsnTyrLysLysAspValAspLeuSerIleLysTrpAsnArgTrpIleLeuLysProM : 20 |||!:! ! !.. ! !|||! !|||:!::!!! !|||||||||.!!|||||||||! AsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 274363 : AATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTA : 274420 21 : etGlyValTrpProArgSerArgHisValSerGlnArgGluValCysLeuAsnTrpLe : 39 !:|||!.!|||||| !:!! !! !..!!!!:!! !||| ! !|||::: || leGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLeuSerHisLe 274421 : TAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCt : 274477 40 : uIleAsnAlaValCysTyrSerLeuIleSerPheLeuPheAlaProGlyTyrLeuTyr : 58 |::: :::||||||!!!!!!||| !! ! ! !! !|||.!! !!!:!! uLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIlePheHis 274478 : tttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCAC : 274534 59 : ValSerLeuGluValGluGluValTyrAspLysLeuLysLeuTyrGlyProLeuMetP : 78 :!!! !|||! !! !|||...:!!:!! |||||||||||| !||||||||| IleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyH 274535 : ATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTC : 274594 79 : heTyrValMetAlaTyrIleLysTyrTyrSerLeuMetAlaHisThrAsnAspIleAr : 97 !!:: !!!!:!.! |||!!.||| !!!!|||:!! !!.!!:!!!.!!:||||| isTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleAr 274595 : ACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACG : 274651 98 : gGluCysIleLysCysIleAspCysAspTrpArgAsnValIleHisSerGluAspArg : 116 |! |||:!::!! !!!:.!. |||||||||! !|||! !... !!||||||!:! gGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAspGln 274652 : CGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAA : 274708 117 : GluIleMetValAlaAsnAlaIlePheGlyArgArgLeuValLysIleCysThrPheP : 136 :!!:!:|||:!! !||||||! .!!|||||| !:!!!.!! .!!|||.!! | GlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaP 274709 : CAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGT : 274768 137 : heMetPheSerGlyPheValPhePheTyrIleAlaValProMetSerAlaGlyLysIl : 155 ||||| !!!||| !!:!!! !!:!! !:!: !..! !!.!.!!! ! !! :! heMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGlnThrVa 274769 : TCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGT : 274825 156 : eAlaIleGluGlyThrAsnArgThrPheIleProLeuAlaPheProValSerLysLeu : 174 ! !:!!! !..! !!.!|||||| ! ! !||| !!! ! !!.!! !||| ! lGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLysLys 274826 : TCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAG : 274882 175 : IleValAspThrGlnArgAsnProSerAsnGlnIlePhePheSerIleGlnLeuPheG : 194 ||||||! ..!.!.! !!:!|||!!!|||:!!||| !!.!!:!! |||!!! ! . IleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnPheValS 274883 : ATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGT : 274942 195 : lyGlyMetLeuIleHisSerIleAlaAlaGlyValCysCysLeuAlaValAlaPheAl : 213 .!|||.!.:!!:!::!!|||! !|||!.!|||!.!! ! !!||||||!.!!.!||||| erGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAl 274943 : CGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGC : 274999 214 : aValHisAlaCysGlyGlnMetGlnValLeuMetCysTrpMetSerHisLeuValAsp : 232 |!.!||||||! !||||||:!!...||||||||| |||!!:!!!.!.!!!|||:!! aAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheValAsn 275000 : GGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAAT : 275056 233 : GlyArgValAspMetSer<->AsnThrThrAsnGlyArgIleAlaLysIleValAsnG : 251 ! ! !|||...::: |||... ..!..!|||!.! !:!!|||.!.! HisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValValValGluH 275057 : CATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAAC : 275116 252 : lnHisValArgIleGln{Ly} >>>> Target Intron 1 >>>> {s}PheLe : 259 !.|||:!!|||:!!! {!.} 74 bp {.}|||:! isHisLeuArgValLeu{Se}++ ++{r}PheIl 275117 : ATCATCTGAGGGTACTC{AG}gt.........................ag{T}TTCAT : 275214 260 : uThrValMetGluLysAlaLeuThrGlnAlaSerLeuValGluLeuLeuGlyCysThr : 278 !.!! !!!:||| ! !.!:!!!.!!:! !!!!!!!:!!||||||!!! !|||||| eAlaArgIleGluAspValMetAsnArgIleCysPheMetGluLeuPheLysCysThr 275215 : AGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAATTGTTCAAGTGTACT : 275271 279 : ValGlyIleCysLeuLeuGlyTyrTyrIleIle : 289 :!!! !!!:|||:!!|||||||||||||||:!! LeuAspMetCysMetLeuGlyTyrTyrIleLeu 275272 : CTGGATATGTGCATGCTTGGCTATTACATTCTC : 275306 vulgar: Lalb_14629 0 289 . KQ414889.1 274362 275306 + 436 M 238 714 G 0 3 M 18 54 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274363 275306 436 + . gene_id 9 ; sequence Lalb_14629 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274363 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274363 275135 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274363 275306 436 + . alignment_id 9 ; Query Lalb_14629 ; Align 274363 1 714 ; Align 275080 239 54 ; Align 275211 258 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 410 Query range: 0 -> 290 Target range: 259751 -> 260881 1 : AsnTyrLysLysAspValAspLeuSerIleLysTrpAsnArgTrpIleLeuLysProM : 20 !:!!:!! !.. !! !|||! !|||:!!:!!!::|||||||||.!!|||||||||! SerPheThrSerHisSerAspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProI 259752 : AGTTTCACTAGCCACAGTGACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGA : 259809 21 : etGlyValTrpProArgSerArgHisValSerGlnArgGluValCysLeuAsnTrpLe : 39 !:|||!.!||||||! !||| ! !..!!!!::!! !||| ! !:!!::! :! leGlyAlaTrpProProSerSerSerThrThrArgLeuGluLysIleIleSerValIl 259810 : TAGGCGCTTGGCCACCTTCATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTAT : 259866 40 : uIleAsnAlaValCysTyrSerLeuIleSerPheLeuPheAlaProGlyTyrLeuTyr : 58 !:!:! ! !:!!||||||||| !||| ! !! !.!. !||| !! |||:!! eLeuIlePheIleCysTyrSerThrIleLeuValThrLeuIleProCysValLeuHis 259867 : CCTGATCTTTATCTGCTACAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCAC : 259923 59 : ValSerLeuGluValGluGluValTyrAspLysLeuLysLeuTyrGlyProLeuMetP : 78 :!! !|||||| !|||...:!!||| ||| !|||:!! !|||||||||! MetLeuLeuGluLysGluSerLeuTyrMetLysThrLysValLeuGlyProLeuThrH 259924 : ATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCC : 259983 79 : heTyrValMetAlaTyrIleLysTyrTyrSerLeuMetAlaHisThrAsnAspIleAr : 97 !!:: !!:!:!.!! !|||!!.||| !!!|||:!! !... !!..||||||! isTrpPheValGlyCysIleAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLe 259984 : ACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACT : 260040 98 : gGluCysIleLysCysIleAspCysAspTrpArgAsnValIleHisSerGluAspArg : 116 !...|||:!::!! !:!:!!: !|||||||||! !:!!! .....!:!!|||!:! uSerCysValGluHisValGluAsnAspTrpArgIleIleThrArgGluLysAspGln 260041 : TAGCTGCGTGGAACACGTGGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAG : 260097 117 : GluIleMetValAlaAsnAlaIlePheGlyArgArgLeuValLysIleCysThrPheP : 136 .!.:!:|||:!! ! !!|||! !||||||||| !:!!!.! !|||.!! !| AsnValMetLeuArgTyrAlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaP 260098 : AACGTGATGTTGAGATACGCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTT : 260157 137 : heMetPheSerGlyPheValPhePheTyrIleAlaValProMetSerAlaGlyLysIl : 155 ||:!! .!!||| !!:!!! !|||! !:!:!.!..! !:!!|||.!!! ! !|| heValGlnGlyGlyValLeuCysPheCysLeuValThrValLeuSerThrGluValIl 260158 : TCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGAT : 260214 156 : eAlaIleGluGlyThrAsnArgThrPheIleProLeuAlaPheProValSerLysLeu : 174 | !:!:! !..! !!..|||! ! !! !! !||| !!! ! !!|||! !||| ! eGlnValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaValTyrLysGlu 260215 : ACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAG : 260271 175 : IleValAspThrGlnArgAsnProSerAsnGlnIlePhePheSerIleGlnLeuPheG : 194 :!::!!:!!..!.!. !!:!|||! !|||:!!||| !!.!! !:!:|||!!! !!. LeuIleAsnValAsnAspSerProMetAsnGluIleValLeuValValGlnPheValS 260272 : CTGATAAACGTGAACGACAGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCT : 260331 195 : lyGlyMetLeuIleHisSerIleAlaAlaGlyValCysCysLeuAlaValAlaPheAl : 213 .!|||.!.:!!:!::!!|||! !.!!!.!|||:!!! ! !!||||||!.!!.!.!..! erGlyPheIleValAsnSerSerThrValGlyIlePheSerLeuAlaAlaValLeuTh 260332 : CGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGAC : 260388 214 : aValHisAlaCysGlyGlnMetGlnValLeuMetCysTrpMetSerHisLeuValAsp : 232 !!.!|||||||||||||||:!!.!.||||||||| |||!!:!!!.!.!!!|||||| rAlaHisAlaCysGlyGlnLeuAsnValLeuMetGluTrpIleThrGluPheValAsp 260389 : CGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAATGGATCACGGAGTTTGTGGAC : 260445 233 : GlyArgValAspMetSerAsnThrThrAsnGlyArgIleAlaLysIleValAsnGlnH : 252 ! ! ! !:!!! !!.!!!.! !.!! ! !!:! ! !:!::!! !:!!| GluSerArgAsnArgLysLysLysAlaProPheLysGluIleGlyValIleValGluH 260446 : GAGTCGAGGAACAGGAAGAAAAAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAAC : 260505 253 : isVal{Ar} >>>> Target Intron 1 >>>> {g}IleGlnLysPheLeuTh : 260 || !{ } 260 bp {!}:!: !..|||:!!:! isHis{Le}+- -+{u}LeuCysSerPheIleSe 260506 : ATCAT{TT}ga.........................tg{A}TTGTGCAGCTTCATATC : 260789 261 : rValMetGluLysAlaLeuThrGlnAlaSerLeuValGluLeuLeuGlyCysThrVal : 279 ! !!!:||| ! !.!:!!!.!!:! !!!!!!!:!!||||||!!! !!||||||:!! rArgIleGluAspValMetAsnArgIleCysPheLeuGluLeuPheArgCysThrLeu 260790 : GCGTATCGAGGATGTGATGAACCGGATATGCTTCCTGGAGTTGTTCAGGTGCACTCTG : 260846 280 : GlyIleCysLeuLeuGlyTyrTyrIleIleVal : 290 ! !||||||||||||||||||||||||:!!:!! AspIleCysLeuLeuGlyTyrTyrIleLeuMet 260847 : GATATATGTCTACTTGGCTACTATATTCTTATG : 260881 vulgar: Lalb_14629 0 290 . KQ414889.1 259751 260881 + 410 M 253 759 S 0 2 5 0 2 I 0 256 3 0 2 S 1 1 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259752 260881 410 + . gene_id 10 ; sequence Lalb_14629 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259752 260512 . + . KQ414889.1 exonerate:protein2genome:local exon 259752 260512 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260513 260514 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 260513 260772 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260771 260772 . + . intron_id 0 ; splice_site "TG" KQ414889.1 exonerate:protein2genome:local cds 260773 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260773 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259752 260881 410 + . alignment_id 10 ; Query Lalb_14629 ; Align 259752 1 759 ; Align 260774 255 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 404 Query range: 0 -> 261 Target range: 232438 -> 233221 1 : AsnTyrLysLysAspValAspLeuSerIleLysTrpAsnArgTrpIleLeuLysProM : 20 ||| !! !::!||| !!!:! !||||||:!! !|||||||||.!!|||! !|||| AsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProM 232439 : AACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGA : 232496 21 : etGlyValTrpProArgSerArgHisValSerGlnArgGluValCysLeuAsnTrpLe : 39 |||||!.!||||||||| !! !.!...!|||::! !:!! ! ||| || etGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLe 232497 : TGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACT : 232553 40 : uIleAsnAlaValCysTyrSerLeuIleSerPheLeuPheAlaProGlyTyrLeuTyr : 58 |:!:!.. !..!|||:!!||||||!!:! !! !! !.!!!.!||| !! !|||!:! uLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPhe 232554 : GTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTC : 232610 59 : ValSerLeuGluValGluGluValTyrAspLysLeuLysLeuTyrGlyProLeuMetP : 78 :!! !!!!|||! ! !...:!! ! !!:!:!:!!|||! ! !||||||:!!! IleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerH 232611 : ATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTC : 232670 79 : heTyrValMetAlaTyrIleLysTyrTyrSerLeuMetAlaHisThrAsnAspIleAr : 97 !!:!:!!|||!.! ! :!:!!.|||! !!!!|||:!!||| ! .!!|||||||||! isPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLe 232671 : ACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCT : 232727 98 : gGluCysIleLysCysIleAspCysAspTrpArgAsnValIleHisSerGluAspArg : 116 ! ! |||:!::!! :!: ! |||||||||||||||! ! !!! !!||| uTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArg 232728 : CTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGT : 232784 117 : GluIleMetValAlaAsnAlaIlePheGlyArgArgLeuValLysIleCysThrPheP : 136 !!::!:|||:!! !||||||! !.!!|||||| !:!!!.! |||..!.!!|||! AspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheC 232785 : GATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTT : 232844 137 : heMetPheSerGlyPheValPhePheTyrIleAlaValProMetSerAlaGlyLysIl : 155 !||| !!!!||| !!! !! ! ! ! |||!.!..! !:!: !! !.!!! !.! ysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPh 232845 : GCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTT : 232901 156 : eAlaIleGluGlyThrAsnArgThrPheIleProLeuAlaPheProValSerLysLeu : 174 ! !:!:! !..! !!:! !:!!.!. !|||||| !!! ! !! !!! !! ! ! eTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLys 232902 : CTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAG : 232958 175 : IleValAspThrGlnArgAsnProSerAsnGlnIlePhePheSerIleGlnLeuPheG : 194 :!::!!||||||::! !!:!|||!!!|||:!!|||.!.||| !:!!|||! !.!!. LeuMetAspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuS 232959 : CTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCT : 233018 195 : lyGlyMetLeuIleHisSerIleAlaAlaGlyValCysCysLeuAlaValAlaPheAl : 213 .!|||.!.:!!:!::!!|||:!!.!!!.!|||!.!||| !!|||!.!!.!!.!.!.|| erGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAl 233019 : CCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGC : 233075 214 : aValHisAlaCysGlyGlnMetGlnValLeuMetCysTrpMetSerHisLeuValAsp : 232 |:!!|||||||||||||||:!!.!.|||:!!|||! :!!..! !!||||||||| aMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAsp 233076 : GATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGAC : 233132 233 : GlyArgValAspMetSerAsnThrThrAsnGlyArgIleAlaLysIleValAsnGlnH : 252 !.!!:!! !.!. !..!!....!.!!.!. !!!:!:!!!.! ||||||.!.!!.| AlaLysGlyGlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisH 233133 : GCGAAAGGGCAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATC : 233192 253 : isValArgIleGlnLysPheLeuThrVal : 261 ||:!!|||! ! !!:!!:!|||:!!||| isLeuArgThrLeuArgTyrLeuSerVal 233193 : ATTTGCGTACATTAAGGTATTTGTCTGTG : 233221 vulgar: Lalb_14629 0 261 . KQ414889.1 232438 233221 + 404 M 261 783 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232439 233221 404 + . gene_id 11 ; sequence Lalb_14629 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232439 233221 . + . KQ414889.1 exonerate:protein2genome:local exon 232439 233221 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232439 233221 404 + . alignment_id 11 ; Query Lalb_14629 ; Align 232439 1 783 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 380 Query range: 6 -> 255 Target range: 266634 -> 267384 7 : AspLeuSerIleLysTrpAsnArgTrpIleLeuLysProMetGlyValTrpProArgS : 26 |||! !|||:!::!!! !|||||||||.!!|||||||||!!:|||!.!||||||! !! AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProL 266635 : GATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGT : 266692 27 : erArgHisValSerGlnArgGluValCysLeuAsnTrpLeuIleAsnAlaValCysTy : 45 ! !! !..!|||:!!! !||| ! !:!!::!!:: !:!:! !!.!:!!||||| euSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266693 : TGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 46 : rSerLeuIleSerPheLeuPheAlaProGlyTyrLeuTyrValSerLeuGluValGlu : 64 |!!!! !||| !||| ! ! !||| !!! !!!:!!:!! !||||||! !||| rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 65 : GluValTyrAspLysLeuLysLeuTyrGlyProLeuMetPheTyrValMetAlaTyrI : 84 ...:!! ! |||:!!|||:!!!:!|||||||||! !!:: !!:!:!.! | SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 85 : leLysTyrTyrSerLeuMetAlaHisThrAsnAspIleArgGluCysIleLysCysIl : 103 ||!!.||| !!!!|||:!! !!.!!:!!!.!!:||||||! |||:!!:!! !!! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 104 : eAspCysAspTrpArgAsnValIleHisSerGluAspArgGluIleMetValAlaAsn : 122 :.!. |||||||||! !|||! !... !!||||||!:!:!!:!:|||:!! !||| tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 123 : AlaIlePheGlyArgArgLeuValLysIleCysThrPhePheMetPheSerGlyPheV : 142 |||! .!!|||||| !:!!!.!! !.!!|||.!! |||||| !!!||| !!: AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 143 : alPhePheTyrIleAlaValProMetSerAlaGlyLysIleAlaIleGluGlyThrAs : 161 !! !!:!! !:!: !..! !!.!.!!! ! !! :!:! !:!!! ..! !!. euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 162 : nArgThrPheIleProLeuAlaPheProValSerLysLeuIleValAspThrGlnArg : 180 !|||! ! ! !! !||| !!! ! !!|||! !||| !!!::!!! ..!.!.! ! rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 181 : AsnProSerAsnGlnIlePhePheSerIleGlnLeuPheGlyGlyMetLeuIleHisS : 200 !:!|||!!!|||:!!||| !!.!! ! !|||!!! ! ..!|||.!.:!!:!::!!| SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 201 : erIleAlaAlaGlyValCysCysLeuAlaValAlaPheAlaValHisAlaCysGlyGl : 219 ||! !!.!!.!|||!.!! ! !!||||||!.!!.!||||||!.!|||||||||||||| erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 220 : nMetGlnValLeuMetCysTrpMetSerHisLeuValAsp<->GlyArgValAspMet : 237 |:!!...||||||||| |||!!:!.!.!.!!!|||:!! ..!|||! !..!! nLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsn 267272 : GCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAAT : 267328 238 : SerAsnThrThrAsnGlyArgIleAlaLysIleValAsnGlnHisValArgIle : 255 !.!|||..! ! !! !!:!|||!.! !:!!|||.!.!!.|||:!!|||:!! LysAsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgVal 267329 : AAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTT : 267384 vulgar: Lalb_14629 6 255 . KQ414889.1 266634 267384 + 380 M 226 678 G 0 3 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266635 267384 380 + . gene_id 12 ; sequence Lalb_14629 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266635 267384 . + . KQ414889.1 exonerate:protein2genome:local exon 266635 267384 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266635 267384 380 + . alignment_id 12 ; Query Lalb_14629 ; Align 266635 7 678 ; Align 267316 233 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 338 Query range: 0 -> 255 Target range: 303175 -> 304863 1 : AsnTyrLysLysAspValAspLeuSerIleLysTrpAsnArgTrpIleLeuLysProM : 20 |||||||||||||||:!!! !! ! !! !||| !:!!:!|||||||||||| !!: AsnTyrLysLysAspIleValTyrValThrLysHisSerLysTrpIleLeuLysSerL 303176 : AATTACAAGAAAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCC : 303233 21 : etGlyValTrpProArgSerArgHisValSerGlnArgGluValCysLeuAsnTrpLe : 39 !:|||:!!|||||| ! ! :!!..!:!!! !! !! !! !||| :! euGlyIleTrpProAlaVal------LeuAspGluThrAlaGlyPheLeuProLysIl 303234 : TTGGTATTTGGCCAGCCGTG------TTGGACGAAACCGCAGGATTCCTACCAAAAAT : 303284 40 : uIleAsnAlaValCysTyrSerLeuIleSerPheLeuPheAlaProGlyTyrLeuTyr : 58 !! !! !!.!:!! !! !!! !:!!:!!! !||| ! ! !||| !! !|||:!! eThrIleGlyLeuSerAsnLeuValLeuLeuPheThrValIleProCysIleLeuHis 303285 : CACCATTGGACTCAGTAATTTGGTTCTATTATTCACCGTGATACCGTGTATTCTACAC : 303341 59 : ValSerLeuGluValGluGluValTyrAspLysLeuLysLeuTyrGlyProLeuMetP : 78 :!!! !!!!||| !:!!!!:..! !:!|||||||||!:!|||! !|||! | IleIlePheGluGlnLysAspThrIleIleArgLeuLysLeuPheGlyLeuLeuSerP 303342 : ATAATATTCGAACAAAAGGATACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTT : 303401 79 : heTyrValMetAlaTyrIleLysTyrTyrSerLeuMetAlaHisThrAsnAspIleAr : 97 ||! !:!!!!::!!! !!:||||||!:::!!||| .!!!..! ! |||!: heCysLeuIleSerLeuMetLysTyrTrpAlaLeuAlaThrArgLysProArgIleLy 303402 : TCTGTTTGATCTCGTTGATGAAGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAA : 303458 98 : gGluCysIleLysCysIleAspCysAspTrpArgAsn >>>> Target Intron : 110 !|||||||||:!! :!:.!. !!||||||!:!.!. 938 bp sGluCysIleGluGluValGlnSerAspTrpLysGlu++ 303459 : AGAATGTATAGAAGAGGTGCAAAGTGATTGGAAAGAGgt................... : 303499 111 : 1 >>>> ValIleHisSerGluAspArgGluIleMetValAlaAsnAlaIlePheGl : 126 ||| ! ! !..!|||||||||!!:|||:!! ! !!!.! !.!.|| ++ValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetGl 303500 : ......agGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGGG : 304483 127 : yArgArgLeuValLysIleCysThrPhePheMetPheSerGlyPheValPhePheTyr : 145 ||||!.!|||..!! !||||||.!!.!.||||||!:!!!!||| !..!.!!!:!:!! yArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHis 304484 : TCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCAC : 304540 146 : IleAlaValProMetSerAlaGlyLysIleAlaIleGluGlyThrAsnArgThrPheI : 165 ! !.!:!!! !.!.:!!.!!|||! ! ! :!:!!:! ! !|||||||||.!!! ThrValMetGlnPheAlaThrGlyThrTyr---ValAspGluTyrAsnArgThrIleL 304541 : ACGGTCATGCAGTTCGCGACCGGAACGTAT---GTGGATGAGTATAATCGTACGATTA : 304597 166 : leProLeuAlaPheProValSerLysLeuIleValAspThrGlnArgAsnProSerAs : 184 !||||||!.!!:!|||..!! !!.. !:!! !!|||..!|||! !!:!|||! ! ! ysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIleTy 304598 : AACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTA : 304654 185 : nGlnIlePhePheSerIleGlnLeuPheGlyGlyMetLeuIleHisSerIleAlaAla : 203 !:!!:!: !!!:!! !:!!!!.! !.!. !!||| :!!|||:!!||||||.!!||| rGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThrAla 304655 : CGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGCT : 304711 204 : GlyValCysCysLeuAlaValAlaPheAlaValHisAlaCysGlyGlnMetGlnValL : 223 |||!.!||| ! ||||||!.! !||||||..!|||||||||||||||!!:.!.:!!: GlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleV 304712 : GGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCG : 304771 224 : euMetCysTrpMetSerHisLeuValAspGlyArgValAspMetSerAsnThrThrAs : 242 !!|||! ! ! :!!.!! !!||||||:!!.!!!:! |||::! ! !:! alMetSerArgLeuGlyAspLeuValAsnSerLys------GluSerSerAspLeuAs 304772 : TTATGTCTCGATTGGGTGATCTTGTCAACAGCAAA------GAATCATCTGATTTAGA : 304822 243 : nGlyArgIleAlaLysIleValAsnGlnHisValArgIle : 255 ! !|||:!! !:!!||||||.!.!!.|||:!!|||||| pLysArgLeuIleGluIleValGluHisHisLeuArgIle 304823 : TAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATT : 304863 vulgar: Lalb_14629 0 255 . KQ414889.1 303175 304863 + 338 M 26 78 G 2 0 M 81 243 5 0 2 I 0 934 3 0 2 M 46 138 G 1 0 M 78 234 G 2 0 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303176 304863 338 + . gene_id 13 ; sequence Lalb_14629 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303176 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303176 303496 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304863 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304863 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 303176 304863 338 + . alignment_id 13 ; Query Lalb_14629 ; Align 303176 1 78 ; Align 303254 29 243 ; Align 304435 110 138 ; Align 304573 157 234 ; Align 304807 237 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 319 Query range: 0 -> 233 Target range: 278555 -> 279263 1 : AsnTyrLysLysAspValAspLeuSerIleLysTrpAsnArgTrpIleLeuLysProM : 20 !..!::!!.! !||| ! ! !|||:!!:!! !|||||||||.!!|||||||||! ThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProI 278556 : ACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGA : 278613 21 : etGlyValTrpProArgSerArgHisValSerGlnArgGluValCysLeuAsnTrpLe : 39 !:||||||||||||! !|||! ! !|||!!! !||| ! ! !::! !:! leGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValVa 278614 : TTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGT : 278670 40 : uIleAsnAlaValCysTyrSerLeuIleSerPheLeuPheAlaProGlyTyrLeuTyr : 58 !:!! !:!! !!! !! !||||||.!!||||||!!.!.!||| !! !|||! ! lLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCys 278671 : CCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGC : 278727 59 : ValSerLeuGlu<->ValGluGluValTyrAspLysLeuLysLeuTyrGlyProLeuM : 77 ..! !|||!!: ..!! !!::!! !! |||:!!|||:!! !|||||||||! ThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuS 278728 : ACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAA : 278787 78 : etPheTyrValMetAlaTyrIleLysTyrTyrSerLeuMetAlaHisThrAsnAspIl : 96 |||! !..!|||||| ||||||||||||! !||||||:!!!.! !..! ! || erPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIl 278788 : GTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGAT : 278844 97 : eArgGluCysIleLysCysIleAspCysAspTrpArgAsnValIle<-><-><->His : 112 | !!:!!|||:!:!!. !||| ! |||||| ! !..!:!! ... eGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGln 278845 : CGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaa : 278901 113 : SerGluAspArgGluIleMetValAlaAsnAlaIlePheGlyArgArgLeuValLysI : 132 ...|||:::|||||||||||| !! !!:!|||! !.!!|||||| !|||!.!! . GluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIleP 278902 : gaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCT : 278961 133 : leCysThrPhePheMetPheSerGlyPheValPhePheTyrIleAlaValProMetSe : 151 !! !!.!! !||||||!:!|||||| ||||||!:! ! !!.!:!!|||:!!! heSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPh 278962 : TCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTT : 279018 152 : rAlaGlyLysIleAlaIleGluGlyThrAsnArgThrPheIleProLeuAlaPhePro : 170 !|||! !:::! ! !||| !|||..!||| ! ! ! !!! !||||||||| eAlaValArgThrGluIleIle---AspAsnGluThrValArgSerGlnAlaPhePro 279019 : CGCAGTACGCACGGAGATCATC---GACAATGAAACGGTGAGATCTCAAGCGTTCCCG : 279072 171 : ValSerLysLeuIleValAspThrGlnArgAsnProSerAsnGlnIlePhePheSerI : 190 :!!! !::: !:!!:!!||| !!!::! !!:!|||||| !:!!||| ! ! !! IleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheM 279073 : ATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCA : 279132 191 : leGlnLeuPheGlyGlyMetLeuIleHisSerIleAlaAlaGlyValCysCysLeuAl : 209 !:|||! !!!.!.!!.!.!.:!!:!!:!!|||:!!.!!!.!|||!.!||| !!||| etGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIl 279133 : TGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGAT : 279189 210 : aValAlaPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetCysTrpMetSer : 228 !!.!!.!|||!.!:!!|||!.!|||||||||.!.::!:!!|||:!! !:!!..! eAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAsp 279190 : TGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGAT : 279246 229 : HisLeuValAspGly : 233 ! |||:!!|||||| LysLeuIleAspGly 279247 : AAGCTCATCGACGGA : 279263 vulgar: Lalb_14629 0 233 . KQ414889.1 278555 279263 + 319 M 62 186 G 0 3 M 49 147 G 0 9 M 47 141 G 1 0 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278556 279263 319 + . gene_id 14 ; sequence Lalb_14629 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278556 279263 . + . KQ414889.1 exonerate:protein2genome:local exon 278556 279263 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278556 279263 319 + . alignment_id 14 ; Query Lalb_14629 ; Align 278556 1 186 ; Align 278745 63 147 ; Align 278901 112 141 ; Align 279042 160 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 288 Query range: 256 -> 388 Target range: 224137 -> 224682 257 : LysPheLeuThrValMetGluLysAlaLeuThrGlnAlaSerLeuValGluLeuLeuG : 276 !:!||||||||| !! |||||||||||| !|||!.!|||!!!||||||!!!|||| ArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValGluPheLeuG 224138 : AGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGGAATTTCTAG : 224195 277 : lyCysThrValGlyIleCysLeuLeuGlyTyrTyrIleIleValGluSerArgAlaMe : 295 |||||! !:!!..!|||||||||||||||||||||:!!||||||! ! !!!:! !!! lyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleValValArgLysLysIl 224196 : GCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTGGTACGAAAGAAAAT : 224252 296 : tAsnMetThr{Al} >>>> Target Intron 1 >>>> {a}IleAlaThrTyr : 303 :!.. :::{ } 84 bp {!} !.!|||||| eThrTyrSer{As}-+ ++{n}AlaValThrTyr 224253 : CACGTATTcg{aa}at.........................ag{C}GCGGTGACTTAC : 224360 304 : AlaMetIleLeuGlySerLeuIlePheAsnIlePheIlePheCysTyrIleGlyGluL : 323 !!!::!!||| !|||||| |||||||||||||||||||||||||||||||||| PheIleLeuLeuMetSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluL 224361 : TTCATACTACTCATGTCtcttactttcaatatttttatattttgttacatAGGAGAGC : 224420 324 : euValAspAspGlnTyrArg{L} >>>> Target Intron 2 >>>> {ys}Va : 331 |||||! !!!:||| :::{|} 65 bp {||}:: euValAlaGluGlnValLys{L}-+ +-{ys}Il 224421 : TGGTAGCTGAAcaggtgaaa{a}at.........................aa{aa}at : 224509 332 : lGlyGlnMetSerTyrMetIleAspTrpTyrArgLeuProLysAsnThrLysLeuSer : 350 :||||||:!!||||||||||||||||||||||||||| !! !|||! !||||||!!! eGlyGlnValSerTyrMetIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCys 224510 : tggacaAGTGTCGTACATGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGC : 224566 351 : ValValLeuIleMetAlaMetSerSerLeuProThrLysLeuThrAlaGlyArgLeuV : 370 !:!!||||||!!:|||||||||!:!! ! !!! !|||||||||||||||!.!:!!| CysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetV 224567 : TGCATTCTGATAATCGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGG : 224626 371 : alLysLeuSerLeuAlaSerPheSerAsnValSerIleValIleLeuLeuTyrVal : 388 ||:!!|||!!!|||.!!!!!|||.!!:!!|||||||||..!||| !:!! !:!! alGluLeuCysLeuThrThrPheGlyAspValSerIleThrIleThrValThrIle 224627 : TCGAACTGTGTCTAACCACTTTCGGTGACGTAAGTATCACAATCACCGTCACTATA : 224682 vulgar: Lalb_14629 256 388 . KQ414889.1 224137 224682 + 288 M 42 126 S 0 2 5 0 2 I 0 80 3 0 2 S 1 1 M 30 90 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224138 224682 288 + . gene_id 15 ; sequence Lalb_14629 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224138 224265 . + . KQ414889.1 exonerate:protein2genome:local exon 224138 224265 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224266 224267 . + . intron_id 1 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local intron 224266 224349 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224348 224349 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 224350 224441 . + . KQ414889.1 exonerate:protein2genome:local exon 224350 224441 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224442 224443 . + . intron_id 2 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local intron 224442 224506 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 224505 224506 . + . intron_id 1 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 224507 224682 . + . KQ414889.1 exonerate:protein2genome:local exon 224507 224682 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224138 224682 288 + . alignment_id 15 ; Query Lalb_14629 ; Align 224138 257 126 ; Align 224351 300 90 ; Align 224509 331 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 281 Query range: 0 -> 257 Target range: 289714 -> 290482 1 : AsnTyrLysLysAspValAspLeuSerIleLysTrpAsnArgTrpIleLeuLysProM : 20 ..!|||:!!! !|||:!! !! !!!!.!!:!!! !!.!|||||||||||||||! ArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleLeuLysProI 289715 : CGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCTTGAAACCGA : 289772 21 : etGlyValTrpPro<->ArgSerArgHisValSerGlnArgGluValCysLeuAsnTr : 38 !:|||:!!!::||| !! !!!!!.!!.!|||::!|||||| ! !::: leGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgThrAlaSerVa 289773 : TAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGT : 289829 39 : pLeuIleAsnAlaValCysTyrSerLeuIleSerPheLeuPheAlaProGlyTyrLeu : 57 !|||:!:! ! !||||||! !|||:!!:!!..!|||:!!.!.!.!||| ! !! ! lLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValProPheSerHis 289830 : GTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCAT : 289886 58 : TyrValSerLeuGluValGluGluValTyrAspLysLeuLysLeuTyrGlyProLeuM : 77 :!!||| !!!!...! !.!.!!::!! !! :!!||| ! !|||||||||! HisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuGlyProLeuT 289887 : CACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCGGACCGTTGA : 289946 78 : etPheTyrValMetAlaTyrIleLysTyrTyrSerLeuMetAlaHisThrAsnAspIl : 96 !|||! !:!!! .!!!:!.!!||||||! !! !!!!! ! ! !:::! || hrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGlySerAlaIl 289947 : CGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGAT : 290003 97 : eArgGluCysIleLysCysIleAspCysAspTrpArgAsnValIleHisSerGluAsp : 115 | !!...|||:!:||| !|||!!: ! ||||||!:!! :!! ! !!..!!!: !! eGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAspGluAspHis 290004 : CGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCAT : 290060 116 : ArgGluIleMetValAlaAsnAlaIlePheGlyArgArgLeuValLysIleCysThrP : 135 |||! ||||||:!! ! !!!.!! .!..!!|||!.!|||:!!|||:!:|||.!!. ArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysLeuCysAlaI 290061 : CGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGA : 290120 136 : hePheMetPheSerGlyPheValPhePheTyrIleAlaValProMetSerAlaGlyLy : 154 !!|||:!!!:!! !||| !:!!! !!:! !!! !!.!:!!|||:!!! !:!! !|| lePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPheSerLysLy 290121 : TCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAA : 290177 155 : sIleAlaIleGluGlyThrAsnArgThrPheIleProLeuAlaPheProValSerLys : 173 | ::!:!:.!.||| ||| !|||.!!! !||||||.!!!:!|||! !! !:!! s---SerValAsnGly---AsnValThrIleArgProLeuThrTyrProGlyTyrGlu 290178 : G---AGCGTGAACGGT---AACGTGACTATCAGACCTCTAACTTATCCCGGTTACGAG : 290228 174 : LeuIleValAspThrGlnArgAsnProSerAsnGlnIlePhePheSerIleGlnLeuP : 193 !.!! !!|||..!|||!:!!:!|||:!! !!:!!||| !!|||!!!!!:!!.! ! GluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetHisCysV 290229 : GAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTG : 290288 194 : heGlyGlyMetLeuIleHisSerIleAlaAlaGlyValCysCysLeuAlaValAlaPh : 212 !! !! !|||:!!! !:!|||.!! !!.!!.!! ! !!|||.!!..! !|| alTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePh 290289 : TCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGATCTT : 290345 213 : eAlaValHisAlaCysGlyGlnMetGlnValLeuMetCysTrpMetSerHisLeuVal : 231 ||||..!|||.!!|||||||||!!::!!:!!! !! ! !!:!!..! !!|||..! eAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAspLeuThr 290346 : CGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTGACA : 290402 232 : AspGlyArgValAspMetSerAsnThrThrAsnGlyArgIleAlaLysIleValAsnG : 251 ! !! !!:!! :!!..!!!. !..!!:!! !|||:!:||| :!!|||!:! LysArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValValValSerG 290403 : AAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTGTGAGCG : 290462 252 : lnHisValArgIleGlnLys : 257 ||||||..!||| !||| lyHisValGluIleLeuLys 290463 : GTCACGTGGAGATCTTGAAG : 290482 vulgar: Lalb_14629 0 257 . KQ414889.1 289714 290482 + 281 M 24 72 G 0 3 M 130 390 G 1 0 M 4 12 G 1 0 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289715 290482 281 + . gene_id 16 ; sequence Lalb_14629 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289715 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289715 290482 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289715 290482 281 + . alignment_id 16 ; Query Lalb_14629 ; Align 289715 1 72 ; Align 289790 25 390 ; Align 290180 156 12 ; Align 290192 161 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 272 Query range: 0 -> 290 Target range: 194150 -> 196393 1 : AsnTyrLysLysAspValAspLeuSerIleLysTrpAsnArgTrpIleLeuLysProM : 20 ||||||||| !|||..!!!:! !:!!:!!::! !:! !:!!|||! !|||! AsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProI 194151 : AATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGA : 194208 21 : etGlyValTrpProArgSerArgHisValSerGlnArgGluValCysLeuAsnTrpLe : 39 !:|||:!!|||||||||..! ! |||! |||!!: ! !! ! !:: leGlyIleTrpProArgGluAsp------SerLeuArgAspArgValArgLeuPheAl 194209 : TCGGTATCTGGCCAAGGGAGGAT------TCTCTTCGCGACAGAGTCCGACTGTTCGC : 194259 40 : uIleAsnAlaValCysTyrSerLeuIleSerPheLeuPheAlaProGlyTyrLeuTyr : 58 ! !!.!!.!||| !!:!:!!|||!!:!!!||||||.!.!.!||| ! :!!||| aGlnThrGlyValValPheAlaLeuMetCysPheLeuLeuValProHisValIleTyr 194260 : TCAAACTGGCGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTAC : 194316 59 : ValSerLeuGluValGluGluValTyrAspLysLeuLysLeuTyrGlyProLeuMetP : 78 ..!! !!!!!!: !|||!!::!! ! :!!|||:!! !!.! !!! !:!!| ThrTyrPheAspCysGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValP 194317 : ACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGT : 194376 79 : heTyrValMetAlaTyrIleLysTyrTyrSerLeuMetAlaHisThrAsnAspIleAr : 97 || !:!!:!!||| !||||||!:!!::!!!:!!!!:!.!:!!! !!!.!!:||||| heSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnArgLysGluIleAr 194377 : TCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAG : 194433 98 : gGluCysIleLysCysIleAspCysAspTrpArgAsnValIleHisSerGluAspArg : 116 | |||:!: ! !!:!!: .!.!::|||:!!||| !..!||||||||| gPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCysGluGluAspArg 194434 : ATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGA : 194490 117 : GluIleMetValAlaAsnAlaIlePheGlyArgArgLeuValLysIleCysThrPheP : 136 :!!:!:|||..! ! !|||! !.!!|||||| !!!!..!! :!:! ! ! . GlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyL 194491 : CAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGAC : 194550 137 : heMetPheSerGlyPheValPhePheTyrIleAlaValProMetSerAlaGlyLysIl : 155 !! !:!.!!||| !:!! !:!:!!||| !:!!|||:!!! !:!!! !!:!|| euSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluArgIl 194551 : TTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGAT : 194607 156 : eAlaIleGluGlyThrAsnArgThrPheIleProLeuAlaPheProValSerLysLeu : 174 | :!!:!!! ! !|||!!!||| ||||||||| !!!:! ! !!:! ! :!! e---ValLysGluAspAsnSerThrGlnIleProLeuProTyrLeuSerAsnTyrVal 194608 : T---GTCAAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTT : 194661 175 : IleValAspThrGlnArgAsnProSerAsnGlnIlePhePheSerIleGlnLeuPheG : 194 .!! !!! ! !:!! !:::|||! ! !!:!!||| ||| ! |||:!!.!. PhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerGlnIleLeuI 194662 : TTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGA : 194721 195 : lyGlyMetLeuIleHisSerIleAlaAlaGlyValCysCysLeuAlaValAlaPheAl : 213 !.!!! :!!||| |||! !..!|||:!!! ! !!|||!.!!.!.!!.!! leSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIl 194722 : TTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTAT : 194778 214 : aValHisAlaCysGlyGlnMetGlnValLeuMetCysTrpMetSerHisLeuValAsp : 232 !:!!|||..!|||||| !.!.:!!||| !! ! !!|||..! !:!! eMetHisCysCysGlyLeuPheGluValThrSerArgArgMetGluThrIle------ 194779 : TATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGATGGAGACTATT------ : 194832 233 : GlyArgValAspMetSerAsnThrThrAsnGlyArgIleAlaLysIleValAsnGlnH : 252 !||| !! .!!!!. !! !...||||||:!! ! ! :!!|||.!. | ---SerValProThrGlyLysAspIleArgGlyArgLeuArgAspValValGlnPheH 194833 : ---TCTGTGCCCACTGGGAAGGATATTCGGGGTAGACTTAGGGACGTCGTTCAGTTTC : 194886 253 : isValArgIleGln{Ly} >>>> Target Intron 1 >>>> {s}PheLeuTh : 260 ||:!!!:! ! {||} 1391 bp {|}||| ! isLeuLysAlaIle{Ly}++ ++{s}PheAlaGl 194887 : ATCTGAAAGCAATT{AA}gt.........................ag{a}tTCGCTGA : 196301 261 : rValMetGluLysAlaLeuThrGlnAlaSerLeuValGluLeuLeuGlyCysThrVal : 279 !:!!!!:||||||||||||!.! !.!! !||| !|||:!!||||||||||||:!! uMetIleGluLysAlaLeuAsnIleValPheLeuSerGluMetLeuGlyCysThrIle 196302 : AATGATCGAGAAAGCACTGAACATCGTGTTTCTATCAGAGATGCTTGGCTGCACTATC : 196358 280 : GlyIleCysLeuLeuGlyTyrTyrIleIleVal : 290 !||||||!!!|||! !||| !:!!|||||| IleIleCysPheLeuGluTyrGlyValIleVal 196359 : ATCATATGTTTCCTGGAATACGGTGTAATCGTG : 196393 vulgar: Lalb_14629 0 290 . KQ414889.1 194150 196393 + 272 M 27 81 G 2 0 M 126 378 G 1 0 M 74 222 G 3 0 M 23 69 S 0 2 5 0 2 I 0 1387 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194151 196393 272 + . gene_id 17 ; sequence Lalb_14629 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 194151 194902 . + . KQ414889.1 exonerate:protein2genome:local exon 194151 194902 . + . insertions 0 ; deletions 6 KQ414889.1 exonerate:protein2genome:local splice5 194903 194904 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 194903 196293 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 196292 196293 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 196294 196393 . + . KQ414889.1 exonerate:protein2genome:local exon 196294 196393 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194151 196393 272 + . alignment_id 17 ; Query Lalb_14629 ; Align 194151 1 81 ; Align 194232 30 378 ; Align 194610 157 222 ; Align 194832 234 69 ; Align 196295 258 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 232 Query range: 164 -> 257 Target range: 202682 -> 202960 165 : IleProLeuAlaPheProValSerLysLeuIleValAspThrGlnArgAsnProSerA : 184 :!! !:!!.!!||| !! !!||| !!!!|||:!!|||..!::! !!:!||| !| LeuSerValThrPheSerPheSerGlyPheIleIleAspValArgTyrSerProValA 202683 : CTTAGTGTGACGTTCTCCTTCTCAGGATTTATCATTGATGTTAGATACAGTCCTGTGA : 202740 185 : snGlnIlePhePheSerIleGlnLeuPheGlyGlyMetLeuIleHisSerIleAlaAl : 203 ||:!!|||||||||||||||!:!:!! ! !.!! !!!:|||||||||.!!:!!.!!!. snGluIlePhePheSerIleArgIleValAlaValIleLeuIleHisGlyValThrVa 202741 : ACGAGATCTTCTTCTCGATTCGAATCGTAGCTGTCATCCTAATTCACGGTGTCACTGT : 202797 204 : aGlyValCysCysLeuAlaValAlaPheAlaValHisAlaCysGlyGlnMetGlnVal : 222 !|||!.!|||||||||.!!!.! !||||||||||||! !||||||||||||.!.||| lGlyAlaCysCysLeuThrAlaLeuPheAlaValHisAspCysGlyGlnMetAspVal 202798 : AGGAGCTTGTTGCTTGACAGCGTTGTTTGCGGTTCACGATTGCGGCCAGATGGACGTT : 202854 223 : LeuMetCysTrpMetSerHisLeuValAspGlyArgValAspMetSer--AsnThrTh : 241 ||||||..!|||:!!..!||||||:!!||||||||| !|||||||||##||| .. LeuMetAlaTrpLeuGluHisLeuMetAspGlyArgSerAspMetSer##Asn---Va 202855 : TTGATGGCCTGGCTGGAACATTTGATGGATGGTCGTTCGGATATGAGTAAAAT---GT : 202910 242 : rAsnGlyArgIleAlaLysIleValAsnGlnHisValArgIleGlnLys : 257 !|||||||||!!:!.!! ||||||!:!||||||:!!||||||! !||| lAsnGlyArgMetValThrIleValSerGlnHisIleArgIleLeuLys 202911 : GAATGGCAGAATGGTGACCATCGTGAGCCAACACATACGGATACTGAAA : 202960 vulgar: Lalb_14629 164 257 . KQ414889.1 202682 202960 + 232 M 74 222 F 0 2 M 1 3 G 1 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202683 202960 232 + . gene_id 18 ; sequence Lalb_14629 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202683 202960 . + . KQ414889.1 exonerate:protein2genome:local exon 202683 202960 . + . insertions 0 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local similarity 202683 202960 232 + . alignment_id 18 ; Query Lalb_14629 ; Align 202683 165 222 ; Align 202907 239 3 ; Align 202910 241 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 226 Query range: 301 -> 387 Target range: 280124 -> 280456 302 : ThrTyrAlaMetIleLeuGlySerLeuIlePheAsnIlePheIlePheCysTyrIleG : 321 |||||| !|||.!!||| !||||||! ||||||:!!||||||.!!|||||||||| ThrTyrLeuMetPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleG 280125 : ACGTATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCG : 280182 322 : lyGluLeuValAspAspGln >>>> Target Intron 1 >>>> TyrArgLys : 330 |||||:!!:!!..!!!:||| 74 bp ! ! !||| lyGluIleLeuSerGluGln++ ++CysLeuLys 280183 : GTGAAATTCTCTCCGAACaggt.........................agTGCTTAAAA : 280283 331 : ValGlyGlnMetSerTyrMetIleAspTrpTyrArgLeuProLysAsnThrLysLeuS : 350 |||||| ! !!!||||||||||||||||||||||||||| !!!.! ! !! !. ValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnG 280284 : GTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAG : 280343 351 : erValValLeuIleMetAlaMetSerSerLeuProThrLysLeuThrAlaGlyArgLe : 369 !!:!!:!!||||||.!.|||:!!|||!:!! ! !!! !|||||||||||||||!:!:! lyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIl 280344 : GTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGAT : 280400 370 : uValLysLeuSerLeuAlaSerPheSerAsnValSerIleValIleLeuLeuTyr : 387 !:!! ! |||||||||::!||||||!!!!:!|||||||||:!!! !|||! !||| eIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 280401 : CATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 280456 vulgar: Lalb_14629 301 387 . KQ414889.1 280124 280456 + 226 M 26 78 5 0 2 I 0 70 3 0 2 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280125 280456 226 + . gene_id 19 ; sequence Lalb_14629 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280125 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280125 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280456 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280125 280456 226 + . alignment_id 19 ; Query Lalb_14629 ; Align 280125 302 78 ; Align 280277 328 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 215 Query range: 282 -> 381 Target range: 305076 -> 305786 283 : LeuLeuGlyTyrTyrIleIleValGluSerArgAlaMetAsnMetThrAlaIleAlaT : 302 !!!||| |||::: !!!:!!!..!::!! |||! ..!::!:!!.!!| PheLeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrT 305077 : TTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAA : 305134 303 : hrTyrAlaMetIleLeuGlySerLeuIlePheAsnIlePheIlePheCysTyrIleGl : 321 |||||.!!:!!:!!||| !|||:!!! !|||||||||||||||!!.||||||||||| hrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGl 305135 : CATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGG : 305191 322 : yGluLeuValAspAspGln >>>> Target Intron 1 >>>> TyrArgLysV : 331 ||||:!!:!! !!::!! 413 bp !!!!!..| yGluIleLeuMetGluLys++ ++SerSerSerV 305192 : TGAGATTCTTATGGAAAAGgt.........................agAGCAGTAGCG : 305634 332 : alGlyGlnMetSerTyrMetIleAspTrpTyrArgLeuProLysAsnThrLysLeuSe : 350 ||||| ! !!!!:!||||||..!||||||!.!||||||! !!.|||! !! !.! alGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGl 305635 : TTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGG : 305691 351 : rValValLeuIleMetAlaMetSerSerLeuProThrLysLeuThrAlaGlyArgLeu : 369 !:!!:!!||||||!!:|||||||||||| !|||.!!|||:!!!:!||||||!:!:!! yLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysVal 305692 : TCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTA : 305748 370 : ValLysLeuSerLeuAlaSerPheSerAsnValSer : 381 ||| ! |||||||||:!!!!!|||.!!||||||||| ValAspLeuSerLeuSerThrPheGlyAsnValSer 305749 : GTTGATTTATCTTTATCCACATTTGGAAACGTGAGT : 305786 vulgar: Lalb_14629 282 381 . KQ414889.1 305076 305786 + 215 M 45 135 5 0 2 I 0 409 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305077 305786 215 + . gene_id 20 ; sequence Lalb_14629 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305077 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305077 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305786 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305786 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305077 305786 215 + . alignment_id 20 ; Query Lalb_14629 ; Align 305077 283 135 ; Align 305625 328 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 197 Query range: 295 -> 382 Target range: 206065 -> 206407 296 : AsnMetThrAlaIleAlaThrTyrAlaMetIleLeuGlySerLeuIlePheAsnIleP : 315 |||! ||||||:!! !..!||| !! !:!:! ! !|||! !! !||| !:!!| AsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerCysThrPheCysValP 206066 : AATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTTGTACATTCTGCGTTT : 206123 316 : heIlePheCysTyrIleGlyGluLeuValAspAspGln >>>> Target Intron : 328 |||||.!.||||||||||||:!!|||:!! !|||||| 81 bp heIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206124 : TTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt.................. : 206164 329 : 1 >>>> TyrArgLysValGlyGlnMetSerTyrMetIleAspTrpTyrArgLeuP : 344 !!!.! |||||| !! |||! !! !:!::!!||||||||||||| ++AsnHisValValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuP 206165 : .......agAACCACGTCGTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTC : 206291 345 : roLysAsnThrLysLeuSerValValLeuIleMetAlaMetSerSerLeuProThrLy : 363 ||!!.!.. ! !! !|||:!!:!!||||||!!:|||||||||!:!! !|||! !|| roAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSerAsnTyrProIleLy 206292 : CAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTCTAATTACCCAATAAA : 206348 364 : sLeuThrAlaGlyArgLeuValLysLeuSerLeuAlaSerPheSerAsnValSerIle : 382 |||||||||||||!:!:!! !!:!!:!!|||||||||||||||!!!:!!||||||!!: sLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPheThrAspValSerMet 206349 : ATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTCACCGATGTAAGTATG : 206405 vulgar: Lalb_14629 295 382 . KQ414889.1 206065 206407 + 197 M 32 96 5 0 2 I 0 77 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206066 206407 197 + . gene_id 21 ; sequence Lalb_14629 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206066 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206066 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206407 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206407 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206066 206407 197 + . alignment_id 21 ; Query Lalb_14629 ; Align 206066 296 96 ; Align 206243 328 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 193 Query range: 298 -> 382 Target range: 301710 -> 302042 299 : AlaIleAlaThrTyrAlaMetIleLeuGlySerLeuIlePheAsnIlePheIlePheC : 318 |||!!: !|||!:! !! :!:||| !|||!!!! !||||||||||||||||||| AlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAsnIlePheIlePheC 301711 : GCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATATTCATATTCT : 301768 319 : ysTyrIleGlyGluLeuValAspAspGln >>>> Target Intron 1 >>>> : 328 ||||||||||||||:!!:!!..!!!:||| 80 bp ysTyrIleGlyGluIleLeuSerGluGln++ ++ 301769 : GCTACATCGGCGAGATTCTTTCCGAACAGgt.........................ag : 301876 329 : TyrArgLysValGlyGlnMetSerTyrMetIleAspTrpTyrArgLeuProLysAsnT : 347 ! !!!!:!!:!!|||..! |||||| !||||||||||||!.!|||||| !!!.! CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysA 301877 : TGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGA : 301935 348 : hrLysLeuSerValValLeuIleMetAlaMetSerSerLeuProThrLysLeuThrAl : 366 ! !! !..!:!!:!!|||:!!! !.!!!:|||..!! !||| !!||||||||||| rgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAl 301936 : GAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGC : 301992 367 : aGlyArgLeuValLysLeuSerLeuAlaSerPheSerAsnValSerIle : 382 ||||!:!:!!:!! ! ||||||||| !!!!||||||::!|||!:!:!! aGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerValAsnVal 301993 : AGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTAAATGTC : 302042 vulgar: Lalb_14629 298 382 . KQ414889.1 301710 302042 + 193 M 29 87 5 0 2 I 0 76 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301711 302042 193 + . gene_id 22 ; sequence Lalb_14629 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301711 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301711 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302042 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302042 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301711 302042 193 + . alignment_id 22 ; Query Lalb_14629 ; Align 301711 299 87 ; Align 301878 328 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 187 Query range: 295 -> 380 Target range: 277386 -> 277713 296 : AsnMetThrAlaIleAlaThrTyrAlaMetIleLeuGlySerLeuIlePheAsnIleP : 315 :!!:!: !.!!!!:.!!|||:!! !||||||||| !|||:!: |||||||||| AspValGlnThrMetThrThrHisPheMetIleLeuIleSerMetCysPheAsnIleP 277387 : GATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCATgtgtttcaacattt : 277444 316 : heIlePheCysTyrIleGlyGluLeuValAspAspGln >>>> Target Intron : 328 || ! ! |||||||||||||||:!!:!! !!!:||| 72 bp heThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277445 : ttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt.................. : 277485 329 : 1 >>>> TyrArgLysValGlyGlnMetSerTyrMetIleAspTrpTyrArgLeuP : 344 ! !!:!|||||||||:!!:!! !||||||! :!!|||||| !|||| ++CysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuP 277486 : .......agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTAC : 277603 345 : roLysAsnThrLysLeuSerValValLeuIleMetAlaMetSerSerLeuProThrLy : 363 || ! !!. !! |||!:!:!!:!!||||||!!::!!! ||||||||| || roAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLy 277604 : CCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaa : 277660 364 : sLeuThrAlaGlyArgLeuValLysLeuSerLeuAlaSerPheSerAsnVal : 380 |:::|||||||||:::|||:::::::::|||:!! !!!!|||.!!:!!||| sIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspVal 277661 : aattaccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTA : 277713 vulgar: Lalb_14629 295 380 . KQ414889.1 277386 277713 + 187 M 32 96 5 0 2 I 0 68 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277387 277713 187 + . gene_id 23 ; sequence Lalb_14629 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277387 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277387 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277387 277713 187 + . alignment_id 23 ; Query Lalb_14629 ; Align 277387 296 96 ; Align 277555 328 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 325 -> 382 Target range: 234982 -> 235153 326 : AspGlnTyrArgLysValGlyGlnMetSerTyrMetIleAspTrpTyrArgLeuProL : 345 .!.|||! !! !|||||||||:!!! !||||||! !!!:||||||||||||||| GlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProH 234983 : CAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTC : 235040 346 : ysAsnThrLysLeuSerValValLeuIleMetAlaMetSerSerLeuProThrLysLe : 364 ! !!.||| |||.!!:!!|||:!!|||!!::!!! !||||||:!! !! !|||:! isLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIl 235041 : ATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAAT : 235097 365 : uThrAlaGlyArgLeuValLysLeuSerLeuAlaSerPheSerAsnValSerIle : 382 !|||||||||!:!!!!:!!:!!:!!|||:!!|||!!!|||.!!:!!||||||||| eThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspValSerIle 235098 : CACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTGAGTATT : 235153 vulgar: Lalb_14629 325 382 . KQ414889.1 234982 235153 + 146 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234983 235153 146 + . gene_id 24 ; sequence Lalb_14629 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234983 235153 . + . KQ414889.1 exonerate:protein2genome:local exon 234983 235153 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234983 235153 146 + . alignment_id 24 ; Query Lalb_14629 ; Align 234983 326 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 7 -> 118 Target range: 200538 -> 200878 8 : LeuSerIleLysTrpAsnArgTrpIleLeuLysProMetGlyValTrpProArgSerA : 27 :!!!!!|||:!!||||||||||||||||||||| !!|||!.!:!!||| ! !!.! ValCysIleGlnTrpAsnArgTrpIleLeuLysSerMetAlaLeuTrpPheAspLysS 200539 : GTTTGCATACAGTGGAATCGTTGGATCTTGAAATCAATGGCTTTGTGGTTTGACAAAT : 200596 28 : rgHisValSerGlnArgGluValCysLeuAsn-TrpLeuIleAsnAlaValCysTyrS : 46 !:!!:!!|||! ! !||| !! |||:!!# !!||||||!:!|||||||||!! . erAsnIleSerProValGluLys***LeuHis#ArgLeuIleSerAlaValCys***G 200597 : CCAACATTTCACCGGTCGAGAAATAACTACACTCGGCTAATCAGTGCCGTTTGTTAAG : 200654 47 : erLeuIleSerPheLeuPheAlaProGlyTyrLeuTyrValSerLeuGluValGluGl : 65 !!|||!!:...:::...... !|||:!!|||! !|||!!:||||||.! lyLeuMetGlyTyrPheLeuIleLeuCysSerLeuHisValPheLeuAspValGluAs 200655 : GATTGATGggttactttttaatattatgcAGTTTACACGTGTTTCTTGACGTAGAAAA : 200711 66 : uValTyrAspLysLeuLysLeuTyrGlyProLeuMetPheTyrValMetAlaTyrIle : 84 .:!! ! ! |||:!!||||||!:!! !||||||:!:.!. ! !:!!||| ||| nIleLeuLysLysIleLysLeuPheValProLeuValLeuLeuCysLeuAlaThrIle 200712 : TATACTTAAAAAGATTAAATTGTTTGTTCCCCTAGTACTACTTTGCTTGGCTACGATT : 200768 85 : <->LysTyrTyrSerLeuMetAlaHisThrAsnAspIleArgGluCysIleLysCysI : 103 |||! !:!!! !! !:!: !||| !:!!|||! ! ! !||| !:!! !| LeuLysCysHisLeuSerValLeuHisAspAspAspThrTyrThrCysGlyGluHisI 200769 : TTGAAGTGTCATTTGTCGGTACTTCATGATGACGATACTTACACGTGTGGCGAGCATA : 200828 104 : leAspCysAspTrpArgAsn<->ValIleHisSerGluAspArgGluIle : 118 || ! !! !!:|||||| !! |||! |||..!||||||::::::||| leLysTrpGluTrpArgTyrCysValThrHisAspGluAspLysLysIle 200829 : TAAAATGGGAGTGGAGGTATTGTGTCACGCACGACgaggataaaaaaatt : 200878 vulgar: Lalb_14629 7 118 . KQ414889.1 200538 200878 + 140 M 30 90 F 0 1 M 47 141 G 0 3 M 25 75 G 0 3 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 200539 200878 140 + . gene_id 25 ; sequence Lalb_14629 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 200539 200878 . + . KQ414889.1 exonerate:protein2genome:local exon 200539 200878 . + . insertions 6 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local similarity 200539 200878 140 + . alignment_id 25 ; Query Lalb_14629 ; Align 200539 8 90 ; Align 200630 38 141 ; Align 200774 85 75 ; Align 200852 110 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 0 -> 106 Target range: 299668 -> 299989 1 : AsnTyrLysLysAspValAspLeuSerIleLysTrpAsnArgTrpIleLeuLysProM : 20 :!!|||:!!!!.|||:!! !!! !!!!:!::!! ! !!:!|||:!:|||||||||! HisTyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProI 299669 : CATTACCAAAATGACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTA : 299726 21 : etGlyValTrpPro<->ArgSerArgHisValSerGlnArgGluValCysLeuAsnTr : 38 !:|||||||||! ! ! !..!!:!!.! !|||:!!! !||| ! !:!!::: leGlyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuValSerIl 299727 : TCGGAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGAT : 299783 39 : pLeuIleAsnAlaValCysTyrSerLeuIleSerPheLeuPheAlaProGlyTyrLeu : 57 :!!:!!! .!!:!!|||!:!||| !:!:! !|||:!! !! !|||..! !! ! eValLeuMetThrIleCysPheSerSerLeuPhePheIleValLeuProSerGlyHis 299784 : CGTTCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCAT : 299840 58 : TyrValSerLeuGluValGluGluValTyrAspLysLeuLysLeuTyrGlyProLeuM : 77 |||:!!! !!!!! !! !:!!...:!!:!!! !|||:!!|||:!!!:!||||||:!! TyrIlePhePheAlaGluLysSerIleHisValLysValLysValPheGlyProValG 299841 : TACATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTG : 299900 78 : etPheTyrValMetAlaTyrIleLysTyrTyrSerLeuMetAlaHisThrAsnAspIl : 96 |||! !:!! :!! !:!!||||||! !! !||| !:!! !..!! .! lyPheCysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPh 299901 : GTTTTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTT : 299957 97 : eArgGluCysIleLysCysIleAspCysAsp : 106 !..!..!||||||:!! !:!!!!: ! ||| eGluArgCysIleGlnHisValGluArgAsp 299958 : CGAACGATGCATCCAACACGTCGAGAGAGAC : 299989 vulgar: Lalb_14629 0 106 . KQ414889.1 299668 299989 + 140 M 24 72 G 0 3 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299669 299989 140 + . gene_id 26 ; sequence Lalb_14629 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299669 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299669 299989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299669 299989 140 + . alignment_id 26 ; Query Lalb_14629 ; Align 299669 1 72 ; Align 299744 25 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 326 -> 380 Target range: 273014 -> 273176 327 : GlnTyrArgLysValGlyGlnMetSerTyrMetIleAspTrpTyrArgLeuProLysA : 346 ||| :::|||:::|||:!!:!: !||||||! :!!|||||| !|||||| ! GlnCysLysLysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProGlyL 273015 : cagtgtaaaaaaattggcGAGGTAGTTTACATGACGAACTGGTACTATTTACCCGGCA : 273072 347 : snThrLysLeuSerValValLeuIleMetAlaMetSerSerLeuProThrLysLeuTh : 365 !. !! |||..!:!!:!!||||||!!::!!! !!!|||:!! !! !|||:!!|| ysAspIleLeuAspLeuIleLeuIleIleSerArgCysSerValValIleLysIleTh 273073 : AAGATATCCTCGATCTGATTTTGATCATCTCAAGATGCAGTGTTGTGATTAAAATCAC : 273129 366 : rAlaGlyArgLeuValLysLeuSerLeuAlaSerPheSerAsnVal : 380 ||||||||||:!!||| :!!|||:!! !!!!|||.!!:!!||| rAlaGlyArgIleValProMetSerValTyrThrPheGlyAspVal 273130 : CGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTCGGCGATGTA : 273176 vulgar: Lalb_14629 326 380 . KQ414889.1 273014 273176 + 120 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 273015 273176 120 + . gene_id 27 ; sequence Lalb_14629 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 273015 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 273015 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 273015 273176 120 + . alignment_id 27 ; Query Lalb_14629 ; Align 273015 327 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 256 -> 327 Target range: 234521 -> 234914 257 : LysPheLeuThrValMetGluLysAlaLeuThrGlnAlaSerLeuValGluLeuLeuG : 276 !..|||:!! ! !!!:|||!!.!.!:!!!.!! ! !!!!||||||||||||:!!| SerPheIleArgAsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuValG 234522 : AGTTTTATACGGAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAG : 234579 277 : lyCysThrValGlyIleCysLeuLeuGlyTyr{Ty} >>>> Target Intron 1 : 287 ||||||||:!!..!!!:|||:!!|||! !|||{!!} 180 bp lyCysThrLeuAsnMetCysMetLeuGluTyr{**}-+ 234580 : GATGCACGTTGAACATGTGCATGCTCGAGTAT{TA}tt.................... : 234616 288 : >>>> {r}IleIleValGluSerArgAlaMetAsnMetThrAlaIleAlaThrTyr : 303 { } !|||:!! |||!:!! !! ::: :::|||:!!||| +-{*}CysIleLeuThrSerGlnGluLysSerLysGluLysLeuAlaSerTyr 234617 : .....aa{A}TGTATTTTAACTTCTCAGGAAAAgtcgaaggaaaaattagCTTCATAC : 234840 304 : AlaMetIleLeuGlySerLeuIlePheAsnIlePheIlePheCysTyrIleGlyGluL : 323 !.!!!::!:! !! !|||:!!! !||||||||||||||||||||||||||||||||| ValIleValTyrValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluT 234841 : GTCATCGTGTACGTGTCCATGACATTtaatatattcatattttgttACATCGGAGAGA : 234900 324 : euValAspAspGln : 327 !:!! !!:||| hrLeuThrGluGln 234901 : CGCTTACAGAGCAG : 234914 vulgar: Lalb_14629 256 327 . KQ414889.1 234521 234914 + 113 M 30 90 S 0 2 5 0 2 I 0 176 3 0 2 S 1 1 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234522 234914 113 + . gene_id 28 ; sequence Lalb_14629 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234522 234613 . + . KQ414889.1 exonerate:protein2genome:local exon 234522 234613 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234614 234615 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 234614 234793 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234792 234793 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 234794 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234794 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234522 234914 113 + . alignment_id 28 ; Query Lalb_14629 ; Align 234522 257 90 ; Align 234795 288 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14629 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 326 -> 380 Target range: 292389 -> 292551 327 : GlnTyrArgLysValGlyGlnMetSerTyrMetIleAspTrpTyrArgLeuProLysA : 346 ||| !!!!:!!:!!!.!!!. |||||| ! !!!:||||||!.!||||||!:!. GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 347 : snThrLysLeuSerValValLeuIleMetAlaMetSerSerLeuProThrLysLeuTh : 365 ..! ! ! !..!:!!||||||:!::!:|||!!:!!!!.!! !|||! !|||||||| rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 366 : rAlaGlyArgLeuValLysLeuSerLeuAlaSerPheSerAsnVal : 380 |||||||!:!:!! !! ||||||||| !!!!|||.!! !||| rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaVal 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTA : 292551 vulgar: Lalb_14629 326 380 . KQ414889.1 292389 292551 + 109 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 292551 109 + . gene_id 29 ; sequence Lalb_14629 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292390 292551 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 292551 109 + . alignment_id 29 ; Query Lalb_14629 ; Align 292390 327 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1264 Query range: 0 -> 378 Target range: 303169 -> 305786 1 : AsnProTyrTyrGluLysAspIleValTyrIlePheLysIleIleArgTrpIleLeuA : 20 ||| ! !!|||:!!|||||||||||||||:!! ||| !! !!:!|||||||||! AsnLeuAsnTyrLysLysAspIleValTyrValThrLysHisSerLysTrpIleLeuL 303170 : AATTTGAATTACAAGAAAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCCTGA : 303227 21 : snSerLeuGlyIleTrpProSerLeuPheGluAsnSerAsnGlnPheGlnGlnAsnVa : 39 !.||||||||||||||||||:!!:!!!!.!!:.!.!!! !|||! !! !!!.:! ysSerLeuGlyIleTrpProAlaValLeuAspGluThrAlaGlyPheLeuProLysIl 303228 : AGTCCCTTGGTATTTGGCCAGCCGTGTTGGACGAAACCGCAGGATTCCTACCAAAAAT : 303284 40 : lSerIleGlyLeuCysAsnValValLeuLeuPheAlaIleValProPheThrLeuHis : 58 !!!!||||||||| !!|||:!!||||||||||||.!!:!::!!|||! !! !|||||| eThrIleGlyLeuSerAsnLeuValLeuLeuPheThrValIleProCysIleLeuHis 303285 : CACCATTGGACTCAGTAATTTGGTTCTATTATTCACCGTGATACCGTGTATTCTACAC : 303341 59 : LeuThrValGluGluLysSerTrpLysAlaArgValLysLeuIleGlyLeuLeuThrP : 78 :!!! ! !!|||:!!|||..! !! ! !|||:!!||||||.!!|||||||||!:!| IleIlePheGluGlnLysAspThrIleIleArgLeuLysLeuPheGlyLeuLeuSerP 303342 : ATAATATTCGAACAAAAGGATACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTT : 303401 79 : heCysTrpIleSerLeuPheLysTyrTrpSerLeuValSerCysLysProAsnLeuLy : 97 |||||! !|||||||||.!.|||||||||:!!|||!.!!!! ! ||||||!..:!!|| heCysLeuIleSerLeuMetLysTyrTrpAlaLeuAlaThrArgLysProArgIleLy 303402 : TCTGTTTGATCTCGTTGATGAAGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAA : 303458 98 : sTyrCysIleGluPheIleGlnHisAspTrpArgGlu >>>> Target Intron : 110 | ! ||||||||| :!:||| !||||||!:!||| 938 bp sGluCysIleGluGluValGlnSerAspTrpLysGlu++ 303459 : AGAATGTATAGAAGAGGTGCAAAGTGATTGGAAAGAGgt................... : 303499 111 : 1 >>>> ValGluHisSerGluAspArgGluLeuMetLeuLysTyrGlyAsnValGl : 126 |||||| ! !..!|||||||||:!!|||||||||||||||.!.:!!|| ++ValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetGl 303500 : ......agGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGGG : 304483 127 : yArgAsnLeuThrIleLeuCysLeuValPheMetTyrSerGlyGlyPheMetTyrHis : 145 ||||||||||||||||:!!||| !:!!|||||||||!!!|||||| !!!:|||||| yArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHis 304484 : TCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCAC : 304540 146 : ThrIleMetGlnTyrAlaIleGlyThrPheValAspGluHisAsnArgThrIleLysP : 165 |||:!!||||||!:!|||! !||||||!:!|||||||||:!!|||||||||||||||| ThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgThrIleLysP 304541 : ACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAAC : 304600 166 : roLeuValTyrProThrTyrSerGlyLeuPheAspSerGlnAlaSerProPheTyrGl : 184 |||||||||||||||||||||||!.!||||||||| !|||.!!||||||.!!||||| roLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIleTyrGl 304601 : CGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGA : 304657 185 : uLeuValTyrAlaValHisSerValThrGlyTyrValIleTyrSerIleThrValGly : 203 |||||||||| !||||||!!!:!! !||||||||||||||||||||||||!.!||| uLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThrAlaGly 304658 : ATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGT : 304714 204 : AlaCysGlyLeuAlaAlaMetPheAlaThrHisIleCysGlyGlnIleAspIleMetI : 223 ||||||||||||||||||:!:|||||||||||| !||||||||||||||||||:!:! AlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValM 304715 : GCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTA : 304774 224 : leLeuArgLeuGlnAsnLeuAlaGlnLeuGluGluAsnThrAspLeuHisProArgLe : 242 !:! !|||||| :!!|||!.!.!. !:!!|||::::!!|||||| !! !||||| etSerArgLeuGlyAspLeuValAsnSerLysGluSerSerAspLeuAspLysArgLe 304775 : TGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCATCTGATTTAGATAAACGATT : 304831 243 : uValArgIleValGlnHisHisIleArgMetLeu{Ar} >>>> Target Intron : 254 |:!!..!||||||:!!||||||:!:|||!!:|||{||} 70 bp uIleGluIleValGluHisHisLeuArgIleLeu{Ar}++ 304832 : AATAGAAATTGTTGAGCATCATTTGCGAATTTTA{AG}gt.................. : 304871 255 : 2 >>>> {g}PheSerThrValValGlyThrLeuLeuGlnGluValCysPheLeuG : 270 {|}||||||.!!:!!||| !|||:!!|||||||||||||||||||||| ++{g}PheSerAlaIleValGlnThrValLeuGlnGluValCysPheLeuG 304872 : .......ag{A}TTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTTCTTGG : 304985 271 : luPheIleGlySerThrPheMetIleCysLeuLeuGluTyrTyrThrIleThr >>> : 288 |||||||||||||||||!!.:!!||||||||||||||||||||| !|||||| luPheIleGlySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysIleThr++ 304986 : AATTCATTGGTTCTACCTTACTGATATGTCTACTTGAATACTACTGTATAACGgt... : 305041 289 : > Target Intron 3 >>>> AspTrpGluValAsnAsnThrLeuSerLeuIleT : 299 62 bp ||||||||| !!:!||||||:!!||||||! !| ++AspTrpGluSerSerAsnThrValSerLeuThrT 305042 : ......................agGATTGGGAGAGCAGTAATACCGTTAGTCTTACAA : 305134 300 : hrTyrThrMetLeuLeuLeuSerLeuMetPheAsnIlePheIleLeuCysTyrIleGl : 318 ||||||||:!!||||||:!!|||:!!! ||||||||||||||||||||||||||||| hrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGl 305135 : CATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGG : 305191 319 : yAspLeuLeuValGluLys >>>> Target Intron 4 >>>> ThrGlyAsnV : 328 |!!::!!|||:!!|||||| 413 bp !:!.!!!:!| yGluIleLeuMetGluLys++ ++SerSerSerV 305192 : TGAGATTCTTATGGAAAAGgt.........................agAGCAGTAGCG : 305634 329 : alGlySerLeuCysPheMetIleAspTrpTyrLysPheProValGluThrMetArgSe : 347 |||||! !! !||||||||||||..!|||||| ! !!.|||..!:!!|||!!:!.!.! alGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGl 305635 : TTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGG : 305691 348 : rLeuIleLeuIleIleAlaMetSerAsnAsnProAlaLysIleThrAlaGlyHisIle : 366 !||||||||||||||||||||||||!:!|||||||||||||||!:!|||||| ! :!! yLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysVal 305692 : TCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTA : 305748 367 : AlaAspLeuAsnLeuSerThrPheGlyGlyValSer : 378 !.!||||||::!|||||||||||||||..!|||||| ValAspLeuSerLeuSerThrPheGlyAsnValSer 305749 : GTTGATTTATCTTTATCCACATTTGGAAACGTGAGT : 305786 vulgar: Lalb_14619 0 378 . KQ414889.1 303169 305786 + 1264 M 109 327 5 0 2 I 0 934 3 0 2 M 144 432 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 37 111 5 0 2 I 0 409 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303170 305786 1264 + . gene_id 1 ; sequence Lalb_14619 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303170 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303170 303496 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304868 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 2 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305786 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305786 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303170 305786 1264 + . alignment_id 1 ; Query Lalb_14619 ; Align 303170 1 327 ; Align 304435 110 432 ; Align 304940 255 99 ; Align 305101 288 111 ; Align 305625 325 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 618 Query range: 3 -> 378 Target range: 284505 -> 287225 4 : TyrGluLysAspIleValTyrIlePheLysIleIleArgTrpIleLeuAsnSerLeuG : 23 !::!!:! !||| :!!|||! ! ! :!!!!:! !||||||.!!|||!!. !!:!!| TrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleG 284506 : TGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTG : 284563 24 : lyIleTrpPro<->SerLeuPheGluAsnSerAsnGlnPheGlnGlnAsnValSerIl : 41 ||:!!|||||| ||||||! !! !!.!!!! :!! ...::!||| !:! lyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLe 284564 : GCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCT : 284620 42 : eGlyLeuCysAsnValValLeuLeu<->PheAlaIleValProPheThrLeuHisLeu : 59 !!.!||| !!:! ! !!|||:!! ||| !:!:||||||! !.!!||| ! ! uAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThr 284621 : CGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACA : 284677 60 : ThrValGluGluLys<->SerTrpLysAlaArgValLysLeuIleGlyLeuLeuThrP : 78 ..!:!!!!::!!! ..! ! .!!!:!:!!|||:!!||||||! !|||!:!| ValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerP 284678 : GTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTT : 284737 79 : heCysTrpIleSerLeuPheLysTyrTrpSerLeuValSerCysLysProAsnLeuLy : 97 ||||| !!!::!! !.!!||||||!::! !|||:!!||| !! !!!.:!! heCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGl 284738 : TCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGG : 284794 98 : sTyrCysIleGluPheIleGlnHisAspTrpArg<->GluValGluHisSer<-><-> : 114 ! |||:!::!! !|||!:: |||||| ! !:!!..!|||||| yGlnCysValLysAspIleArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGlu 284795 : CCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaa : 284851 115 : GluAspArgGluLeuMetLeuLysTyrGlyAsnValGlyArgAsnLeuThrIleLeuC : 133 |||:::||||||:::||| ! ! !!.!!..:!!||||||::!|||.!!|||!!!| GluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheC 284852 : gaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCT : 284911 134 : ysLeuValPheMetTyrSerGlyGlyPheMetTyrHisThrIleMetGlnTyrAlaIl : 152 || !! !|||||||||||||||||||||.!.||| !|||:!:|||! !! ..!! ysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysTh 284912 : GCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCAC : 284968 153 : eGlyThrPheValAspGluHisAsnArgThrIleLysProLeuValTyrProThrTyr : 171 !! ! ! ! ! ! !!|||..!|||:!:!:! !!! !!.!!:!|||! !||| rValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyr 284969 : AGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTAT : 285025 172 : SerGlyLeuPheAspSerGlnAlaSerProPheTyrGluLeuValTyrAlaValHisS : 191 !!||||||.!!||| !!!::.!!||||||! !:!|||:!!||| ! !:!!!!.! ArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnC 285026 : CGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAAT : 285085 192 : erValThrGlyTyrValIleTyrSerIleThrValGlyAlaCysGlyLeuAlaAlaMe : 210 !!:!!.!!!.!!:!||||||||||||:!!|||||||||||||||.!!|||||||||:! ysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaVa 285086 : GCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGT : 285142 211 : tPheAlaThrHisIleCysGlyGlnIleAspIleMetIleLeuArgLeuGlnAsnLeu : 229 !|||!.!! !|||:!!|||||||||.!! |||:!::!: !!:!|||.!.!!.||| lPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeu 285143 : GTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTC : 285199 230 : <-><-><->AlaGlnLeuGluGluAsnThrAspLeuHis<->ProArgLeuValArgI : 245 !.!:!! !..!:!!... !..! !||| ! !||||||! ! !| ValAspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspI 285200 : GTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATA : 285259 246 : leValGlnHisHisIleArgMetLeu{Ar} >>>> Target Intron 1 >>>> : 254 ||:!!:!!||||||:!:!:!!!:|||{ !} 1411 bp leIleGluHisHisLeuLysIleLeu{Gl}++ + 285260 : TCATCGAGCATCATCTGAAGATACTG{GG}gt.........................a : 286697 255 : {g}PheSerThrValValGlyThrLeuLeuGlnGluValCysPheLeuGluPheIle : 272 {!}|||! !:!! !:!!! ! !||||||.!.|||:!!||||||:!!||| ! ||| +{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValIle 286698 : g{T}TTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATT : 286751 273 : GlySerThrPheMetIleCysLeuLeuGluTyrTyrThrIleThr >>>> Target : 288 |||!!!|||!!.! ||||||!!!|||! !|||||| !:!:||| 8 GlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeuThr++ 286752 : GGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTACTGACGgt........... : 286801 289 : Intron 2 >>>> AspTrpGluValAsnAsnThrLeuSerLeuIleThrTyrThr : 301 0 bp !!:|||||| !!:!.!.|||:!!.!! !||||||||| ! ++GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCys 286802 : ..............agGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGC : 286918 302 : MetLeuLeuLeuSerLeuMetPheAsnIlePheIleLeuCysTyrIleGlyAspLeuL : 321 ! !||||||:!!|||!!!! !||||||:!!|||||||||||||||||||||!!::!!| ThrLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleL 286919 : ACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTC : 286978 322 : euValGluLys >>>> Target Intron 3 >>>> ThrGlyAsnValGlySer : 330 || !|||::: 74 bp ! !!!.||||||! ! euSerGluGln++ ++CysLeuLysValGlyLeu 286979 : TCTCCGAACaggt.........................agtGCTTAAAAGTCGGCTTG : 287079 331 : LeuCysPheMetIleAspTrpTyrLysPheProValGluThrMetArgSerLeuIleL : 350 ! ! !!:!|||||||||||||||:::!!.|||! !:!!||| !:!.!!||||||| SerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleL 287080 : TCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATAC : 287139 351 : euIleIleAlaMetSerAsnAsnProAlaLysIleThrAlaGlyHisIleAlaAspLe : 369 |||||.!!|||:!!||||||::! !! !|||:!!||||||||| ! ||| !||||| euIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLe 287140 : TGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCT : 287196 370 : uAsnLeuSerThrPheGlyGlyValSer : 378 |::!||||||!:!||| !!.!!|||||| uSerLeuSerSerPheCysSerValSer 287197 : CTCTTTAAGCAGCTTCTGCAGCGTGAGT : 287225 vulgar: Lalb_14619 3 378 . KQ414889.1 284505 287225 + 618 M 23 69 G 0 3 M 23 69 G 0 3 M 15 45 G 0 3 M 44 132 G 0 3 M 5 15 G 0 6 M 116 348 G 0 9 M 10 30 G 0 3 M 14 42 S 0 2 5 0 2 I 0 1407 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284506 287225 618 + . gene_id 2 ; sequence Lalb_14619 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284506 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284506 285287 . + . insertions 30 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286698 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287225 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287225 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284506 287225 618 + . alignment_id 2 ; Query Lalb_14619 ; Align 284506 4 69 ; Align 284578 27 69 ; Align 284650 50 45 ; Align 284698 65 132 ; Align 284833 109 15 ; Align 284854 114 348 ; Align 285211 230 30 ; Align 285244 240 42 ; Align 286700 255 99 ; Align 286879 288 111 ; Align 287064 325 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 571 Query range: 3 -> 378 Target range: 226912 -> 230409 4 : TyrGluLysAspIleValTyrIlePheLysIleIleArgTrpIleLeuAsnSerLeuG : 23 |||:!!:!! !!:!: ! ! !.!.:!!:!:! !||||||:!:|||!!. !!|||| TyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuG 226913 : TATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCG : 226970 24 : lyIleTrpProSerLeuPheGluAsnSer<-><->AsnGlnPheGlnGlnAsnValSe : 40 ||||||||||||||! ! !:!!!:!||| ...::!! ! ... :!!! lyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMe 226971 : GTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGAT : 227027 41 : rIleGlyLeuCysAsnValValLeuLeuPheAlaIleValProPheThrLeuHisLeu : 59 ! ! !|||||| !!!.!:!!:!! !|||! !:!:||| !! ! !|||:!!:!! tGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrVal 227028 : GGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTG : 227084 60 : ThrValGluGluLysSerTrpLysAlaArgValLysLeuIleGlyLeuLeuThrPheC : 79 ..!:!!|||! !|||.!! ! !! !:!!|||:!!||||||! !:!!:!!|||! ValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPheP 227085 : GTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCT : 227144 80 : ysTrpIleSerLeuPheLysTyrTrpSerLeuValSerCysLysProAsnLeuLysTy : 98 ! !!!:||||||.!!||||||! ! !|||..!! ! !:!! !:!!:!! ! heAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGl 227145 : TCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGA : 227201 99 : rCysIleGluPheIleGlnHisAspTrpArgGluValGluHisSerGluAspArgGlu : 117 |||:!!||| |||:!! ||||||!:!.!.:!!..!:!! !|||||||||.!. uCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsn 227202 : GTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAAC : 227258 118 : LeuMetLeuLysTyrGlyAsnValGlyArgAsnLeuThrIleLeuCysLeuValPheM : 137 :!!|||:!!! !|||!.! !! !||||||!!.|||! !! !:!!||| ! !!|||: ValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheV 227259 : GTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCG : 227318 138 : etTyrSerGlyGlyPheMetTyrHisThrIleMetGlnTyrAlaIleGlyThrPheVa : 156 !:!:!|||... ...::::::! !:!!:!:! ! ! !|||!:! !!!. alPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerValAl 227319 : TCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGC : 227375 157 : lAspGluHis<->AsnArgThrIleLysProLeuValTyrProThrTyrSerGlyLeu : 174 ! ||| !! |||!.!!:! !! ! !:!! !!:!||| ! !.! !:!! aThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIleIle 227376 : AACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATC : 227432 175 : PheAspSerGlnAlaSerProPheTyrGluLeuValTyrAlaValHisSerValThrG : 194 !||| !!:: !||||||||| !!|||:!! !!!:!:!!|||!!.! !||||||| AlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValThrG 227433 : GCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAG : 227492 195 : lyTyrValIleTyrSerIleThrValGlyAlaCysGlyLeuAlaAlaMetPheAlaTh : 213 || !|||:!::!!.!!:!!||| !!.!||||||.!!:!!||||||:!!.!!|||.. lyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaVa 227493 : GTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGT : 227549 214 : rHisIleCysGlyGlnIleAspIleMetIleLeuArgLeuGlnAsnLeu<-><->Ala : 230 !||| !|||||||||!!:!!::!::!!:!:! ! !!||| !:!!||| !.! lHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGly 227550 : TCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGC : 227606 231 : GlnLeuGluGluAsnThrAspLeuHisProArgLeuValArgIleValGlnHisHisI : 250 ::! !!!: !!:!! ! ||| !! !|||:!!!.!!!!|||||| ||||||: ArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValThrHisHisV 227607 : AGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACCACG : 227666 251 : leArgMetLeu{Ar} >>>> Target Intron 1 >>>> {g}PheSerThrVa : 258 !!|||!!:|||{!.} 396 bp {!}||| !.!!:! alArgIleLeu{As}++ ++{n}PheLeuAlaLe 227667 : TTCGAATATTG{AA}gt.........................ag{C}TTTCTGGCCCT : 228086 259 : lValGlyThrLeuLeuGlnGluValCysPheLeuGluPheIleGlySerThrPheMet : 277 !:!!! !! ! !:!!|||:!!:!!..!|||:!!||||||:!!|||!!!|||.!.!!: uIleGluLysThrMetGlnGlnIleAlaPheValGluPheLeuGlyCysThrIleIle 228087 : CATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGTACAATAATT : 228143 278 : IleCysLeuLeuGluTyrTyrThrIleThr >>>> Target Intron 2 >>>> : 288 :!:||||||:!!|||||||||! !|||||| 72 bp LeuCysLeuIleGluTyrTyrIleIleThr++ + 228144 : CTGTGCCTCATCGAGTATTACATCATAACGgt.........................a : 228246 289 : AspTrpGluValAsnAsnThrLeuSerLeuIleThrTyrThrMetLeuLeuLeuSer : 306 !!:|||.!. !!!..!. ! !! ! !:!!||||||:!! !|||||||||||| +GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSer 228247 : gGAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCC : 228302 307 : LeuMetPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuValGluLys >> : 325 !!!! |||||||||||||||...||||||||||||!!::!!:!!!.!||| ! PheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluHis++ 228303 : TTTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACgt.. : 228361 326 : >> Target Intron 3 >>>> ThrGlyAsnValGlySerLeuCysPheMetIle : 335 1889 bp ! !!!!.||||||..! !! !:!|||||| ++CysArgLysValGlyGluLysSerTyrMetIle 228362 : .......................agTGCAGAAAAGTCGGCGAAAAGTCGTACATGATC : 230278 336 : AspTrpTyrLysPheProValGluThrMetArgSerLeuIleLeuIleIleAlaMetS : 355 !!:||||||::!!!. !!! !.!.! !! !! !!!!! !||||||||||||||||||| GluTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetS 230279 : GAATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGT : 230338 356 : erAsnAsnProAlaLysIleThrAlaGlyHisIleAlaAspLeuAsnLeuSerThrPh : 374 ||||| ! !!.!!|||.!!|||||||||:!!!!:!.!!!:|||::!:!!!:!||||| erAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnThrPh 230339 : CCAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACACTTT : 230395 375 : eGlyGlyValSer : 378 |.!!! !|||||| eSerAspValSer 230396 : CAGCGACGTAAGT : 230409 vulgar: Lalb_14619 3 378 . KQ414889.1 226912 230409 + 571 M 29 87 G 0 6 M 127 381 G 0 3 M 70 210 G 0 6 M 24 72 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226913 230409 571 + . gene_id 3 ; sequence Lalb_14619 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226913 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226913 227679 . + . insertions 15 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230409 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230409 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226913 230409 571 + . alignment_id 3 ; Query Lalb_14619 ; Align 226913 4 87 ; Align 227006 33 381 ; Align 227390 160 210 ; Align 227606 230 72 ; Align 228077 255 99 ; Align 228248 288 111 ; Align 230248 325 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 423 Query range: 112 -> 324 Target range: 300006 -> 301797 113 : SerGluAspArgGluLeuMetLeuLysTyrGlyAsnValGlyArgAsnLeuThrIleL : 132 |||.!. !!||| !:!!||||||!:!|||! !!.!:!!.!!||||||||||||! !: SerAsnHisArgThrIleMetLeuArgTyrValThrMetSerArgAsnLeuThrThrV 300007 : TCGAATCATCGTACGATCATGTTGAGATACGTGACTATGAGCAGAAATCTGACGACCG : 300064 133 : euCysLeuValPheMetTyrSerGlyGlyPheMetTyrHisThrIleMetGlnTyrAl : 151 !!||| !||||||:!:|||:!!||||||.!. !|||||||||:!:||||||!:! alCysAlaValPheLeuTyrAlaGlyGlyMetSerTyrHisThrValMetGlnPheLe 300065 : TGTGCGCCGTGTTTCTTTACGCAGGTGGTATGTCGTATCACACGGTGATGCAGTTCTT : 300121 152 : aIleGlyThrPheValAsp{Gl} >>>> Target Intron 1 >>>> {u}His : 159 ! ! ! !..!{||} 42 bp {|}.!. uSerLysAspArgSerSer{Gl}++ ++{u}Glu 300122 : ATCGAAGGACAGAAGCAGC{GA}gt.........................ag{G}GAG : 300187 160 : AsnArgThrIleLysProLeuValTyrProThrTyrSerGlyLeuPheAspSerGlnA : 179 ||| !||| !|||||||||!.!|||||| !|||..! !!!!!.!!|||!!!|||. AsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnT 300188 : AATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAA : 300247 180 : laSerProPheTyrGluLeuValTyrAlaValHisSerValThrGlyTyrValIleTy : 198 !!|||||| !||||||:::|||::: ||| !!.!!!.! :!!!!:|| hrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTy 300248 : CCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTA : 300304 199 : rSerIleThrValGlyAlaCysGlyLeuAlaAlaMetPheAlaThrHisIleCysGly : 217 |!:!:!:|||..!!.!|||! !.!!|||||||||!!:|||!.!||||||||||||||| rAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGly 300305 : CAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGA : 300361 218 : GlnIleAspIleMetIleLeuArgLeuGlnAsnLeuAlaGlnLeuGluGluAsnThrA : 237 ||||||.!.|||..!!!: !||||||:!!:!!|||!.!:!! ! !! !.!.! !| GlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrGlyGluLysA 300362 : CAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGGGAGAGAAGG : 300421 238 : spLeuHisPro<->ArgLeuValArgIleValGlnHisHisIleArgMetLeu{Ar} : 254 || ! !||| ! !|||||| !||||||!:! !!|||:!:!:!:!:|||{||} spAspGlyProAspProLeuValValIleValArgAspHisValLysValLeu{Ar}+ 300422 : ACGACGGTCCTGATCCTTTGGTCGTTATCGTTCGAGATCACGTGAAGGTTTTA{AG}g : 300477 255 : >>>> Target Intron 2 >>>> {g}PheSerThrValValGlyThrLeuLeu : 263 140 bp {|}|||:!!! ! !|||! ! ! !||| + ++{g}PheAlaLysAsnValGluGluThrLeu 300478 : t.........................ag{A}TTTGCAAAGAACGTTGAGGAAACTTTG : 300642 264 : GlnGluValCysPheLeuGluPheIleGlySerThrPheMetIleCysLeuLeuGluT : 283 !::!!: !!|||!!.:!!|||.!!.!!! !||||||.!.!!::!:||||||||||||| ArgAspPheCysLeuValGluIlePheGluSerThrLeuIleLeuCysLeuLeuGluT 300643 : CGTGACTTCTGCTTAGTGGAAATCTTCGAGTCCACGCTGATTTTGTGTTTGCTCGAAT : 300702 284 : yrTyrThrIleThr >>>> Target Intron 3 >>>> AspTrpGluValAsn : 292 ||||| !:!:..! 970 bp !!:|||:!! !!:! yrTyrCysLeuVal++ ++GluTrpGlnAsnSer 300703 : ACTACTGTTTGGTGgt.........................agGAATGGCAAAATAGC : 301699 293 : AsnThrLeuSerLeuIleThrTyrThrMetLeuLeuLeuSerLeuMetPheAsnIleP : 312 :!!|||:!!:!!:!!:!:|||!:! !! |||||| !|||!!!! |||||||||| AspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAsnIleP 301700 : GACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATAT : 301759 313 : heIleLeuCysTyrIleGlyAspLeuLeuValGluLys : 324 |||||!!!||||||||||||!!::!!||| !|||:!! heIlePheCysTyrIleGlyGluIleLeuSerGluGln 301760 : TCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAG : 301797 vulgar: Lalb_14619 112 324 . KQ414889.1 300006 301797 + 423 M 45 135 S 0 2 5 0 2 I 0 38 3 0 2 S 1 1 M 82 246 G 0 3 M 13 39 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 33 99 5 0 2 I 0 966 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300007 301797 423 + . gene_id 4 ; sequence Lalb_14619 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300007 300143 . + . KQ414889.1 exonerate:protein2genome:local exon 300007 300143 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300144 300145 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300144 300185 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300184 300185 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300186 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300186 300476 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 300616 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 300615 300616 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300617 300716 . + . KQ414889.1 exonerate:protein2genome:local exon 300617 300716 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300717 300718 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300717 301686 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 301685 301686 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300007 301797 423 + . alignment_id 4 ; Query Lalb_14619 ; Align 300007 113 135 ; Align 300187 159 246 ; Align 300436 241 39 ; Align 300618 255 99 ; Align 301687 288 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 396 Query range: 5 -> 327 Target range: 232447 -> 234923 6 : LysAspIleValTyrIlePheLysIleIleArgTrpIleLeuAsnSerLeuGlyIleT : 25 ::!||| !! !|||! !.!!:!!:!:! !||||||.!!|||!.. !!:!!||| !| ArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaT 232448 : CGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCAT : 232505 26 : rpProSerLeuPheGluAsnSer<-><->AsnGlnPheGlnGlnAsnValSerIleGl : 42 ||||| !!:!! |||!.!||| .!.|||.!.! !!!.:!!! !! ! rpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLe 232506 : GGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACT : 232562 43 : yLeuCysAsnValValLeuLeuPheAlaIleValProPheThrLeuHisLeuThrVal : 61 ! !|||:!! !:!!:!!:!!! !:!!|||||||||! !! !||| !:!! ! !! uThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPhe 232563 : CACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTC : 232619 62 : GluGluLysSerTrpLysAlaArgValLysLeuIleGlyLeuLeuThrPheCysTrpI : 81 |||!!:! !||| :!!! !|||:!!|||! !||||||! !:!!!:! !! ! !! GluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuM 232620 : GAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGA : 232679 82 : leSerLeuPheLysTyrTrpSerLeuValSerCysLysProAsnLeuLysTyrCysIl : 100 !:.!! !!!.!!.|||!! !!!|||:!!:!! ! !:!!:!! ||||||:! etGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysVa 232680 : TGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGT : 232736 101 : eGluPheIleGlnHisAspTrpArgGluValGluHisSerGluAspArgGluLeuMet : 119 :||| :!::!!!!.|||||||||.!.|||:!! ! !!! !!|||!!:|||||| lGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMet 232737 : GGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATG : 232793 120 : LeuLysTyrGlyAsnValGlyArgAsnLeuThrIleLeuCysLeuValPheMetTyrS : 139 |||||| !!!.!!!.:!!||||||::::!!.!! !:!!..! ! !!! !|||:!!! LeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisT 232794 : TTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACA : 232853 140 : erGlyGlyPheMetTyrHisThrIleMetGlnTyrAlaIleGlyThrPhe<->ValAs : 157 !!|||! ! ! !!.!.! !:!!! ! ! !!!:.!!|||||| |||! hrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGl 232854 : CCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGG : 232910 158 : pGluHisAsnArgThrIleLysProLeuValTyrProThrTyrSerGlyLeuPheAsp : 176 .!..!.!:! !:!!!!: ! |||||| !! ! !! !|||!!! !|||.!.||| yAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAsp 232911 : GAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGAC : 232967 177 : SerGlnAlaSerProPheTyrGluLeuValTyrAlaValHisSerValThrGlyTyrV : 196 !!!::! !|||||| !!|||:!!:!!!:!!.!:!!!!.!!!:!!:!!|||!:!: ThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheI 232968 : ACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCA : 233027 197 : alIleTyrSerIleThrValGlyAlaCysGlyLeuAlaAlaMetPheAlaThrHisIl : 215 !!:!: !!|||:!!|||||||||||||||||||||!.!|||:!:.!.|||! !||| leValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAl 233028 : TCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGC : 233084 216 : eCysGlyGlnIleAspIleMetIleLeuArgLeuGlnAsnLeu<-><->AlaGlnLeu : 232 |||||||||:!::!!:!::!!!!:! !!:!|||.!.:!!||| |||:!! ! aCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGly 233085 : GTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGG : 233141 233 : GluGluAsnThrAspLeuHisProArgLeuValArgIleValGlnHisHisIleArgM : 252 :!!|||.!.! !! ! !!!. !!:!|||! ! !||||||:!!||||||:!:|||! GlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgT 233142 : CAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTA : 233201 253 : etLeu{Ar} >>>> Target Intron 1 >>>> {g}PheSerThrValValGl : 260 |||{!!} 1315 bp {!}|||! ! ! !:!!! hrLeu{Se}++ ++{r}PheIleArgAsnIleGl 233202 : CATTA{AG}gt.........................ag{T}TTTATACGGAATATAGA : 234540 261 : yThrLeuLeuGlnGluValCysPheLeuGluPheIleGlySerThrPheMetIleCys : 279 !!.!:!!:!!.!. !:!!|||.!.:!!|||!!.:!!|||!!!|||!!.! !!:||| uAsnValMetAsnLeuIleCysLeuValGluLeuValGlyCysThrLeuAsnMetCys 234541 : GAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACGTTGAACATGTGC : 234597 280 : LeuLeuGluTyrTyrThrIleThrAspTrpGluValAsnAsnThrLeuSerLeuIleT : 299 :!!|||||||||||| !:!!|||! ! ...|||... ||| ::: : MetLeuGluTyrTyrLeuLeuThrValArgPheThrAsnLysIleLeuArgIle***S 234598 : ATGCTCGAGTATTATTTACTCACGGTACGTTTTactaataaaattcttcgaatttaat : 234657 300 : hrTyrThrMetLeuLeuLeuSer{Le} >>>> Target Intron 2 >>>> {u : 307 :: ... ... !!{ } 180 bp {! erAsn***PheLysTyrPheArg{Ly}++ +-{s 234658 : caaactaatttaaatactttaGA{AA}gt.........................at{G : 234863 308 : }MetPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuValGluLysThrGly : 326 }! |||||||||||||||...||||||||||||!!: !|||..!|||:!!..!||| }ThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGlnValGly 234864 : }ACATTtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGCAGGTAGGA : 234918 327 : Asn : 327 ::: Ser 234919 : TCA : 234923 vulgar: Lalb_14619 5 327 . KQ414889.1 232447 234923 + 396 M 27 81 G 0 6 M 123 369 G 0 3 M 74 222 G 0 6 M 24 72 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 52 156 S 0 2 5 0 2 I 0 176 3 0 2 S 1 1 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232448 234923 396 + . gene_id 5 ; sequence Lalb_14619 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232448 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232448 233208 . + . insertions 15 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234682 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234682 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234683 234684 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234683 234862 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234861 234862 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 234863 234923 . + . KQ414889.1 exonerate:protein2genome:local exon 234863 234923 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232448 234923 396 + . alignment_id 5 ; Query Lalb_14619 ; Align 232448 6 81 ; Align 232535 33 369 ; Align 232907 156 222 ; Align 233135 230 72 ; Align 234525 255 156 ; Align 234864 308 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 385 Query range: 9 -> 378 Target range: 256652 -> 258627 10 : TyrIlePheLysIleIleArgTrpIleLeuAsnSerLeuGlyIleTrpProSerLeuP : 29 |||! !.!!:!!:!:! !||||||.!!|||!!. !!:!!||| !|||||| !! ! TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProPro---S 256653 : TACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCC---T : 256707 30 : heGluAsnSerAsnGlnPheGlnGlnAsnValSerIleGlyLeu<-><-><->CysAs : 45 ..!::!!!!!.. .!!:!!!:!||||||||||||! !||| ||| ! erSerSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTy 256708 : CGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTA : 256764 46 : nValValLeuLeuPheAlaIleValProPheThrLeuHisLeuThrValGluGluLys : 64 !! ! !:!!||||||.!!:!::!!|||! ! !||||||:!! !:!!!!:!!: ! rGlySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAsp 256765 : TGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGAC : 256821 65 : SerTrpLysAlaArgValLysLeuIleGlyLeuLeuThrPheCysTrpIleSerLeuP : 84 |||!:: ! :::|||||| ...|||! !:!!!:! !!! ||||||! ! SerPheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysA 256822 : AGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTG : 256881 85 : heLysTyrTrpSerLeuValSerCysLysProAsnLeuLysTyrCysIleGluPheIl : 103 !!!.||| !! !|||:!!! ! ! !:!!:!!:::||||||:!!||| !|| laAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIl 256882 : CCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATAT : 256938 104 : eGlnHisAspTrpArgGluValGluHisSerGluAspArgGluLeuMetLeuLysTyr : 122 |:!! ||||||||| !|||..!.....!:!!|||!:!:!!:!!|||:!!||| !! eGluThrAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsn 256939 : AGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAAC : 256995 123 : GlyAsnValGlyArgAsnLeuThrIleLeuCysLeuValPheMetTyrSerGlyGlyP : 142 !.!!.. !!|||||| !!:!!.!!! !!!!||| !!.!.!!||| ! |||||| | AlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValP 256996 : GCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttt : 257055 143 : heMetTyrHisThrIleMetGlnTyrAlaIleGlyThrPhe<->ValAspGluHisAs : 160 || ::: ..! ! ! !! ! !! !.!! |||! .!..!.!. heCysPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluTh 257056 : tctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAAC : 257112 161 : nArgThrIleLysProLeuValTyrProThrTyrSerGlyLeuPheAspSerGlnAla : 179 .! !! !:!:::! !||| ! ! !!..!|||!.! !|||!!.:!! !.!. ! rThrIleValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGln 257113 : AACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAG : 257169 180 : SerProPheTyrGluLeuValTyrAlaValHisSerValThrGlyTyrValIleTyrS : 199 |||||| !!|||:!!||| ! !:!!!!.!!! !:!!..! !:!! !! SerProThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrT 257170 : AGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTA : 257229 200 : erIleThrValGlyAlaCysGlyLeuAlaAlaMetPheAlaThrHisIleCysGlyGl : 218 !!! !||||||.!! !! !.!!|||||||||:!:|||||||||||| ! !||||| hrSerThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGl 257230 : CTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCA : 257286 219 : nIleAspIleMet<-><-><->IleLeuArgLeuGlnAsnLeuAlaGlnLeuGluGlu : 234 |:!: !:!::!: ||| !..!!!! !||| !:!!::! !...||| nLeuThrValLeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGlu 257287 : GTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggag : 257343 235 : AsnThrAspLeuHisProArgLeuValArgIleValGlnHisHisIleArgMetLeu{ : 254 ...||| ! !!:!:!!! ! !||||||:!!||||||:!!|||:!!|||{ LysThrPheProPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{ 257344 : aaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{ : 257403 255 : Ar} >>>> Target Intron 1 >>>> {g}PheSerThrValValGlyThrLe : 262 ||} 760 bp {|}! ! !! ! ! !..! !|| Ar}++ +-{g}CysValMetTyrArgAsnLeuLe 257404 : AG}gt.........................ac{G}TGCGTTATGTACCGAAACCTGTT : 258187 263 : uLeuGlnGluValCysPheLeuGluPheIleGlySerThrPheMetIleCysLeuLeu : 281 |! !|||.!.! !! !! ! !:!! !..!! ! !!.!. ! ::: uGlnGlnAsnGly***AsnArgThrTyrAsnAsnPheProIleHisSerTyrSerVal 258188 : GCAACAAAATGGTTAAAATCGTACCTACAATAATTTTCCTATACACAGctattctgtt : 258244 282 : GluTyrTyrThrIleThrAspTrpGluValAsnAsnThrLeuSerLeuIleThrTyrT : 301 :::||| ... :::|||.....!...::: :::||| :::||| IlePheTyrTyrPheGlnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrP 258245 : attttttattattttcaggaATGGTCTACGCaagatattcaaaatttgagttcgtaCT : 258304 302 : hrMetLeuLeuLeuSerLeuMetPheAsnIlePheIleLeuCysTyrIleGlyAspLe : 320 !|||:!!|||:!!|||||| ||||||||||||::::::||||||||||||!!::! heMetIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIl 258305 : TTATGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAAT : 258361 321 : uLeuValGluLys >>>> Target Intron 2 >>>> ThrGlyAsnValGlyS : 330 !|||..!|||:!! 90 bp ! !!!.||||||. eLeuThrGluGln++ ++CysLysLysValGlyA 258362 : ATTAACAGAACAGgt.........................agTGCAAGAAAGTTGGCG : 258481 331 : erLeuCysPheMetIleAspTrpTyrLysPheProValGluThrMetArgSerLeuIl : 349 .!:!! !!:!|||! !||||||||| ! .!.|||! !:!!! !!!:! !..!||||| spValValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIl 258482 : ACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAAT : 258538 350 : eLeuIleIleAlaMetSerAsnAsnProAlaLysIleThrAlaGlyHisIleAlaAsp : 368 ||||:!!|||||| |||!:! !!.!:!!|||||||||||| ... eLeuValIleAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePheHis 258539 : TTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcac : 258595 369 : LeuAsnLeuSerThrPheGlyGlyValSer : 378 ::!::!:!!! !||||||.!!! !|||||| MetSerIleTyrThrPheSerAspValSer 258596 : atGTCCATTTACACATTCAGCGATGTGAGT : 258627 vulgar: Lalb_14619 9 378 . KQ414889.1 256652 258627 + 385 M 18 54 G 1 0 M 15 45 G 0 9 M 112 336 G 0 3 M 67 201 G 0 9 M 31 93 S 0 2 5 0 2 I 0 756 3 0 2 S 1 1 M 70 210 5 0 2 I 0 86 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256653 258627 385 + . gene_id 6 ; sequence Lalb_14619 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256653 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256653 257404 . + . insertions 21 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 258164 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258163 258164 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 258165 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258165 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258627 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258627 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256653 258627 385 + . alignment_id 6 ; Query Lalb_14619 ; Align 256653 10 54 ; Align 256707 29 45 ; Align 256761 44 336 ; Align 257100 156 201 ; Align 257310 223 93 ; Align 258166 255 210 ; Align 258466 325 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 370 Query range: 3 -> 260 Target range: 221360 -> 222146 4 : TyrGluLysAspIleValTyrIlePheLysIleIleArgTrpIleLeuAsnSerLeuG : 23 |||:!!! !:!!:!: !! ! ! ! :!!:!:! !||||||||||||!!. !!:!!| TyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleG 221361 : TACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCG : 221418 24 : lyIleTrpProSerLeuPheGluAsnSer<-><->AsnGlnPheGlnGlnAsnValSe : 40 ||:!!||||||!:!! ! !.!.! !||| .!.::!!:!! ! :!!! lyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLeuIl 221419 : GTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCTGAT : 221475 41 : rIleGlyLeuCysAsnValValLeuLeuPheAlaIleValProPheThrLeuHisLeu : 59 !! !! !:!!||| !! !:!!:!! !||| !:!:||||||! !!:!|||:!!:!! eAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyrVal 221476 : AAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTG : 221532 60 : ThrValGluGluLysSerTrpLysAlaArgValLysLeuIleGlyLeuLeuThrPheC : 79 ! !:!!|||! !:!!..! ! !|||:!!||||||:!:|||! !|||!:!|||| IleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheC 221533 : ATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCT : 221592 80 : ysTrpIleSerLeuPheLysTyrTrpSerLeuValSerCysLysProAsnLeuLysTy : 98 || !!!::!!!!!.!.|||||| !|||:!! !! !:!! !:!!:!!::: ! ysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGl 221593 : GCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGA : 221649 99 : rCysIleGluPheIleGlnHisAspTrpArgGluValGluHisSerGluAspArgGlu : 117 ||||||||| !|||:!! ||||||!:!.!.:!! :!!|||:!!|||!:!!!: uCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLysAsp 221650 : GTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAGGAT : 221706 118 : LeuMetLeuLysTyrGlyAsnValGlyArgAsnLeuThrIleLeuCysLeuValPheM : 137 :!!|||:!!:!! !!!.!! ! !!||||||...|||! !!!::!!||| ! !!|||| IleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheM 221707 : ATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCA : 221766 138 : etTyrSerGlyGlyPheMetTyrHisThrIleMetGlnTyrAlaIleGlyThrPhe<- : 156 ||||||||||| ...|||::: ! !!!:! !!:!::!:!:|||! !.!! etTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIlePr 221767 : TGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCC : 221823 157 : >ValAspGluHisAsnArgThrIleLysProLeuValTyrProThrTyrSerGlyLeu : 174 !.!.!.!!: ||| |||... |||:!!|||!:!||| !! !!! !:!! oAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPheIle 221824 : TGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATC : 221880 175 : PheAspSerGlnAlaSerProPheTyrGluLeuValTyrAlaValHisSerValThrG : 194 !!|||!!!!:! !|||||| ! !!|||:!!:!!!:!:!!:!!!!.! !:!!.!!| ValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaG 221881 : GTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGG : 221940 195 : lyTyrValIleTyrSerIleThrValGlyAlaCysGlyLeuAlaAlaMetPheAlaTh : 213 || !:!!!!::!!||||||||| !!.!||||||.!!|||!.!||||||||||||.. lyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaVa 221941 : GTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGT : 221997 214 : rHisIleCysGlyGlnIleAspIleMetIleLeuArgLeuGlnAsnLeu<-><->Ala : 230 !||| !|||||||||!!:.!.:!::!!!!: ! !!|||:!!:!!||| !.! lHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsnGly 221998 : GCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGC : 222054 231 : GlnLeuGluGluAsnThrAspLeuHisProArgLeuValArgIleValGlnHisHisI : 250 !:! !!!: ! !!.!:!!:!! !! !|||:!!!.!!:!||||||.!.!!.|||: ArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnHisV 222055 : CGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAACACG : 222114 251 : leArgMetLeuArgPheSerThrValValGly : 260 !!|||!!:|||!:!!:! ! ! !:!!||| alArgIleLeuGlnTyrValArgCysIleGly 222115 : TTCGAATATTGCAGTATGTACGTTGTATCGGC : 222146 vulgar: Lalb_14619 3 260 . KQ414889.1 221360 222146 + 370 M 29 87 G 0 6 M 123 369 G 0 3 M 74 222 G 0 6 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221361 222146 370 + . gene_id 7 ; sequence Lalb_14619 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221361 222146 . + . KQ414889.1 exonerate:protein2genome:local exon 221361 222146 . + . insertions 15 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221361 222146 370 + . alignment_id 7 ; Query Lalb_14619 ; Align 221361 4 87 ; Align 221454 33 369 ; Align 221826 156 222 ; Align 222054 230 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 370 Query range: 9 -> 287 Target range: 266637 -> 267558 10 : TyrIlePheLysIleIleArgTrpIleLeuAsnSerLeuGlyIleTrpPro<-><->S : 27 |||! !.!.:!!:!:! !||||||.!!|||!!. !!:!!||| !|||||| | TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuS 266638 : TACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGT : 266695 28 : erLeuPheGluAsnSerAsnGlnPheGlnGlnAsnValSerIleGlyLeuCysAsnVa : 46 ||||| ...!!. !.!.!:!.!! ... !!!.!! !|||! !:!!||| !! erLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCy 266696 : CACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTG : 266752 47 : lValLeuLeuPheAlaIleValProPheThrLeuHisLeuThrValGluGluLysSer : 65 ! !:!!||||||.!!:!!:!!|||! ! !!!!||||||..!:!!|||!!::!!||| sSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSer 266753 : CTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGT : 266809 66 : TrpLysAlaArgValLysLeuIleGlyLeuLeuThrPheCysTrpIleSerLeuPheL : 85 :::.!!!:!||||||:!!.!!|||! !|||!:! !!! !:::!!.!! !.!!! IleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleA 266810 : ATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTA : 266869 86 : ysTyrTrpSerLeuValSerCysLysProAsnLeuLysTyrCysIleGluPheIleGl : 104 !.||| !!!|||:!! ! !!!.. !.!.:!!::: !|||:!!||| !!!:|| snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 266870 : ACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCA : 266926 105 : nHisAspTrpArgGluValGluHisSerGluAspArgGluLeuMetLeuLysTyrGly : 123 | ||||||||| ||| ... !!||||||!:!:!!:!!||||||||| !!!.! nThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAla 266927 : AACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCG : 266983 124 : AsnValGlyArgAsnLeuThrIleLeuCysLeuValPheMetTyrSerGlyGlyPheM : 143 !..:!!|||||| !!:!!.!!|||!!!||| !!.!|||||| ! !!!|||! !.!! ArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuG 266984 : AGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCG : 267043 144 : etTyrHisThrIleMetGlnTyrAlaIleGlyThrPhe<->ValAspGluHisAsnAr : 161 ||| !..!|||! ! !!:!.!!!!: !||| ! |||! !.!..!.!.!|| lyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrAr 267044 : GCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAG : 267100 162 : gThrIleLysProLeuValTyrProThrTyrSerGlyLeuPheAspSerGlnAlaSer : 180 |! !:!! ! ! !||| !! ! !!..!|||!.! !:!!.!!! !.!..!!||| gIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSer 267101 : GATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGC : 267157 181 : ProPheTyrGluLeuValTyrAlaValHisSerValThrGlyTyrValIleTyrSerI : 200 ||| !!|||:!!||| !!.! !!!.! !|||:!!|||!:!:!!:!: !!|||! ProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerS 267158 : CCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGA : 267217 201 : leThrValGlyAlaCysGlyLeuAlaAlaMetPheAlaThrHisIleCysGlyGlnIl : 219 !..!|||||||||! !.!!|||||||||:!!||||||.!!||| |||||||||:! erValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLe 267218 : GCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCT : 267274 220 : eAspIleMetIleLeuArgLeuGlnAsnLeuAlaGlnLeuGluGluAsnThrAspLeu : 238 :..!:!::!!!!::!! !!:!!:!!.!.!!!!.!.!.! !.....!:!!!:!:!! ! uSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLys 267275 : GAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAG : 267331 239 : His<-><-><->ProArgLeuValArgIleValGlnHisHisIleArgMetLeu{Ar} : 254 :!! !!:!:!!! ! !:!!|||:!!||||||:!:|||:!:|||{!!} AsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{Se} 267332 : AACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG} : 267388 255 : >>>> Target Intron 1 >>>> {g}PheSerThrValValGlyThrLeuLe : 263 69 bp {!}|||! !.!! !:!!! !!:!:!!:! ++ ++{r}PheIleAlaArgIleGluSerValMe 267389 : gt.........................ag{C}TTCATAGCACGTATCGAAAGTGTAAT : 267484 264 : uGlnGluValCysPheLeuGluPheIleGlySerThrPheMetIleCysLeuLeuGlu : 282 !...|||:!!||||||:!!|||!!..!! !!!!|||.!. ||||||:!!|||... tSerGluIleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSer 267485 : GAGCGAAATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAGC : 267541 283 : TyrTyrThrIleThr : 287 ||||||! !:!!||| TyrTyrIleLeuThr 267542 : TATTATATCCTTACG : 267558 vulgar: Lalb_14619 9 287 . KQ414889.1 266637 267558 + 370 M 17 51 G 0 6 M 129 387 G 0 3 M 84 252 G 0 9 M 14 42 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266638 267558 370 + . gene_id 8 ; sequence Lalb_14619 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266638 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266638 267389 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267558 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267558 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266638 267558 370 + . alignment_id 8 ; Query Lalb_14619 ; Align 266638 10 51 ; Align 266695 27 387 ; Align 267085 156 252 ; Align 267346 240 42 ; Align 267460 255 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 357 Query range: 0 -> 254 Target range: 208185 -> 208962 1 : AsnProTyrTyrGluLysAspIleValTyrIlePheLysIleIleArgTrpIleLeuA : 20 ||| ! !!|||:!!!!.|||:!: !!:!! ! !!::::!:! ! !|||! |||! AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 21 : snSerLeuGlyIleTrpProSerLeuPheGluAsnSer<->AsnGlnPheGlnGlnAs : 38 !.! !:!!||| !||||||!!!! !.!.!!:..!||| :!! !...|||:! ysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHi 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCA : 208300 39 : nValSerIleGlyLeuCysAsnValValLeuLeu<->PheAlaIleValProPheThr : 56 !:!! !:!!..!:!! !!:! ! !|||||| ||| !:!::!!||| ! ! sIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGly 208301 : TATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGC : 208357 57 : LeuHisLeuThrValGluGluLysSerTrpLysAlaArgValLysLeuIleGlyLeuL : 76 :!! ! !! !:!!! !! :!!..!!:: ! ! !!:!:!!|||:!! !.!! !| MetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaL 208358 : ATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTC : 208417 77 : euThrPheCysTrpIleSerLeuPheLysTyrTrpSerLeuValSerCysLysProAs : 95 ||!:!|||! ! !!!::!!!!! |||||| !! !:!!..! ! !!:!! !:! euSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAs 208418 : TGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGA : 208474 96 : nLeuLysTyrCysIleGluPheIleGlnHisAspTrpArgGluValGluHisSerGlu : 114 !:!!::! ! |||:!!|||!:!:!!:!! !|||||||||.!.|||||||||..!||| pIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGlu 208475 : CATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAG : 208531 115 : AspArgGluLeuMetLeuLysTyrGlyAsnValGlyArgAsnLeuThrIleLeuCysL : 134 ||||||:!!:!!|||||| ! !!!.!!:! !!!.!|||!!.|||! !:!::!!||| AspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysG 208532 : GACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCG : 208591 135 : euValPheMetTyrSerGlyGlyPheMetTyrHisThrIleMetGlnTyrAlaIleGl : 153 !!.!|||||||||.!!||| ......|||::: ! !:!!! ! !.!! !! lyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAs 208592 : GAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGA : 208648 154 : yThrPheValAspGlu<->HisAsnArgThrIleLysProLeuValTyrProThrTyr : 171 !! ! !!|||!!:||| !||| !||| !!:! !||||||||||||..! ! pLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValPro 208649 : CAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCT : 208705 172 : SerGlyLeuPheAspSerGlnAlaSerProPheTyrGluLeuValTyrAlaValHisS : 191 !.! !:!!.!.||| !!:! !|||||| ! !!|||:!! !!|||.!!|||!!.! LysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnL 208706 : AAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAAT : 208765 192 : erValThrGlyTyrValIleTyrSerIleThrValGlyAlaCysGlyLeuAlaAlaMe : 210 !:!!:!!|||!:!||| !:!!!:!||||||||||||||||||||||||||||||:! euLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLe 208766 : TGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCT : 208822 211 : tPheAlaThrHisIleCysGlyGlnIleAspIleMetIleLeuArgLeuGlnAsnLeu : 229 !.!!|||! !||| |||||||||:!:.!.|||:!!!!:! ! !!:!!:!!!!.||| uLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeu 208823 : GCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTG : 208879 230 : <-><->AlaGlnLeuGluGluAsnThrAspLeuHisProArgLeuValArgIleValG : 247 !.!!:! !!!:|||.!.! !:!!||| !!! !||||||!.!!.!||||||: ValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleValG 208880 : GTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCGTGG : 208939 248 : lnHisHisIleArgMetLeuArg : 254 !!!!.|||:!!|||:!!:!!!:! luGlnHisValArgValIleLys 208940 : AGCAGCATGTTCGAGTGATCAAG : 208962 vulgar: Lalb_14619 0 254 . KQ414889.1 208185 208962 + 357 M 32 96 G 0 3 M 17 51 G 0 3 M 109 327 G 0 3 M 71 213 G 0 6 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 208962 357 + . gene_id 9 ; sequence Lalb_14619 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208186 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208962 . + . insertions 15 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208186 208962 357 + . alignment_id 9 ; Query Lalb_14619 ; Align 208186 1 96 ; Align 208285 33 51 ; Align 208339 50 327 ; Align 208669 159 213 ; Align 208888 230 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 322 Query range: 3 -> 255 Target range: 212854 -> 213625 4 : TyrGluLysAspIleValTyrIlePheLysIleIleArgTrpIleLeuAsnSerLeuG : 23 ||||||||| ::: ... ! ! !||||||:!!|||!!. !! !| TyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrG 212855 : TACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGG : 212912 24 : lyIleTrpPro<-><->SerLeuPheGluAsnSerAsnGlnPheGlnGlnAsnValSe : 40 ||:!:|||||| |||! ! !!..! ! !.!.:!! ! ...:!! lyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIleAlaArgLeuVa 212913 : GTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGT : 212969 41 : rIleGlyLeuCysAsnValValLeuLeuPheAlaIleValProPheThrLeuHisLeu : 59 !! ! !:!!||| !!! !:!!:!! !!:! !:!!:!!|||! !!:!|||:!!:!! lAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrVal 212970 : CAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTG : 213026 60 : ThrValGluGluLysSerTrpLysAlaArgValLysLeuIleGlyLeuLeuThrPheC : 79 !:!!!!:! !:::::: ...:!!:!!|||.!!|||:!!!!!.!!|||| PheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheC 213027 : TTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTT : 213086 80 : ysTrpIleSerLeuPheLysTyrTrpSerLeuValSerCysLysProAsnLeuLysTy : 98 || ! !:!!|||!::|||||| ||||||:!! ! ! !:!!:!!::: ysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgTh 213087 : GCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTAC : 213143 99 : rCysIleGluPheIleGlnHisAspTrpArgGluValGluHisSerGluAspArgGlu : 117 |||:!!||| !!!::!!:!!||||||!:!.!.:!! !|||..!||||||!:!||| rCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGlu 213144 : GTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAA : 213200 118 : LeuMetLeuLysTyrGlyAsnValGlyArgAsnLeuThrIleLeuCysLeuValPheM : 137 :!!||| ! ! !!!.!!:! !!|||!:!!..:!!..!! !:!!||| ! !!|||| IleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPhePheM 213201 : ATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCA : 213260 138 : etTyrSerGlyGlyPheMetTyrHisThrIleMetGlnTyrAlaIleGlyThrPheVa : 156 |||||!!!||| ! .!.||| ! !:!!:!:! ! !::! ! !! !.!.|| etTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLysMetVa 213261 : TGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGT : 213317 157 : lAspGluHis<->AsnArgThrIleLysProLeuValTyrProThrTyrSerGlyLeu : 174 |! ||| !! ||| !|||.!!!:!! !:!!||| !|||..!! !!! !:!! lAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSerArgPheIle 213318 : AGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATC : 213374 175 : PheAspSerGlnAlaSerProPheTyrGluLeuValTyrAlaValHisSerValThrG : 194 !!||| !!:! !|||||| ! !!|||:!! !!!:! !:!!!!.! !:!!.!!| ValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleIleAlaG 213375 : GTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTG : 213434 195 : lyTyrValIleTyrSerIleThrValGlyAlaCysGlyLeuAlaAlaMetPheAlaTh : 213 || :!!|||:!!:!!|||.!!|||! !||||||.!!|||||||||:!!||||||.. lyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPheAlaVa 213435 : GAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGT : 213491 214 : rHisIleCysGlyGlnIleAspIleMetIleLeuArgLeuGlnAsnLeuAlaGlnLeu : 232 !||| !|||||||||!!:! !|||:!!!!: ! !!|||:!!:!!||| !.!. ! lHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGly 213492 : TCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGT : 213548 233 : GluGlu<-><->AsnThrAspLeuHisProArgLeuValArgIleValGlnHisHisI : 250 ..!||| !:!! !:!!:!! !! !|||:!!!.! !||||||.!.!!.|||: ArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleValAsnGlnHisV 213549 : AGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATG : 213608 251 : leArgMetLeuArgPhe : 255 !:|||!!:|||!:!!:: alArgIleLeuLysTrp 213609 : TGCGGATACTGAAGTGG : 213625 vulgar: Lalb_14619 3 255 . KQ414889.1 212854 213625 + 322 M 23 69 G 0 6 M 133 399 G 0 3 M 75 225 G 0 6 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212855 213625 322 + . gene_id 10 ; sequence Lalb_14619 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212855 213625 . + . KQ414889.1 exonerate:protein2genome:local exon 212855 213625 . + . insertions 15 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212855 213625 322 + . alignment_id 10 ; Query Lalb_14619 ; Align 212855 4 69 ; Align 212930 27 399 ; Align 213332 160 225 ; Align 213563 235 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 311 Query range: 3 -> 229 Target range: 278558 -> 279254 4 : TyrGluLysAspIleValTyrIlePheLysIleIleArgTrpIleLeuAsnSerLeuG : 23 !::.!.! !||| :!!|||! ! ! :!!!!:! !||||||.!!|||!!. !!:!!| TrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleG 278559 : TGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTG : 278616 24 : lyIleTrpPro<->SerLeuPheGluAsnSerAsnGlnPheGlnGlnAsnValSerIl : 41 ||:!!|||||| ||||||! !! !!.!!!! :!! ...::!||| !:! lyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLe 278617 : GCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCT : 278673 42 : eGlyLeuCysAsnValValLeuLeu<->PheAlaIleValProPheThrLeuHisLeu : 59 !!.!||| !!:! ! !!|||:!! ||| !:!:||||||! !.!!||| ! ! uAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThr 278674 : CGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACA : 278730 60 : ThrValGluGluLys<->SerTrpLysAlaArgValLysLeuIleGlyLeuLeuThrP : 78 ..!:!!!!::!!! ..! ! .!!!:!:!!|||:!!||||||! !|||!:!| ValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerP 278731 : GTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTT : 278790 79 : heCysTrpIleSerLeuPheLysTyrTrpSerLeuValSerCysLysProAsnLeuLy : 97 ||||| !!!::!! !.!!||||||!::! !|||:!!||| !! !!!.:!! heCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGl 278791 : TCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGG : 278847 98 : sTyrCysIleGluPheIleGlnHisAspTrpArg<-><-><->GluValGluHisSer : 113 ! |||:!:.!. !|||!:: |||||| ! ..! !......... yLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGlu 278848 : CAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaa : 278904 114 : GluAspArgGluLeuMetLeuLysTyrGlyAsnValGlyArgAsnLeuThrIleLeuC : 133 |||:::||||||:::||| ! ! !!.!!..:!!||||||::!|||.!!|||!!! GluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheS 278905 : gaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCA : 278964 134 : ysLeuValPheMetTyrSerGlyGlyPheMetTyrHisThrIleMetGlnTyrAlaIl : 152 !! !! !|||||||||||||||||| !!.!.||| !.!!:!:|||! !! ! erAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAl 278965 : GCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGC : 279021 153 : eGlyThrPheValAspGluHisAsnArgThrIleLysProLeuValTyrProThrTyr : 171 !! ! ! ! ! ! !!|||..!|||:!:!:! !!! !!.!!:!|||! !||| aValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyr 279022 : AGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTAT : 279078 172 : SerGlyLeuPheAspSerGlnAlaSerProPheTyrGluLeuValTyrAlaValHisS : 191 !!||||||.!!||| !!!::.!!||||||! !:!|||:!!||| ! !:!!!!.! ArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnC 279079 : CGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAAT : 279138 192 : erValThrGlyTyrValIleTyrSerIleThrValGlyAlaCysGlyLeuAlaAlaMe : 210 !!:!!.!!!.!!:!|||:!!||||||:!!|||||||||||||||.!!||| !|||:! ysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaVa 279139 : GCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGT : 279195 211 : tPheAlaThrHisIleCysGlyGlnIleAspIleMetIleLeuArgLeuGlnAsnLeu : 229 !|||!.!! !|||:!!|||||||||.!! |||:!::!: !!:!|||.!.!!.||| lPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeu 279196 : GTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTC : 279252 vulgar: Lalb_14619 3 229 . KQ414889.1 278558 279254 + 311 M 23 69 G 0 3 M 23 69 G 0 3 M 15 45 G 0 3 M 44 132 G 0 9 M 121 363 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278559 279254 311 + . gene_id 11 ; sequence Lalb_14619 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278559 279254 . + . KQ414889.1 exonerate:protein2genome:local exon 278559 279254 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278559 279254 311 + . alignment_id 11 ; Query Lalb_14619 ; Align 278559 4 69 ; Align 278631 27 69 ; Align 278703 50 45 ; Align 278751 65 132 ; Align 278892 109 363 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 305 Query range: 251 -> 378 Target range: 279903 -> 280438 252 : MetLeuArgPheSerThrValValGlyThrLeuLeuGlnGluValCysPheLeuGluP : 271 !!:!!!!!!|||! !:!! !:!!! ! !||||||.!.|||:!!||||||:!!||| IlePheSerPheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluV 279904 : ATTTTCAGTTTTATATCGCAAATCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGG : 279961 272 : heIleGlySerThrPheMetIleCysLeuLeuGluTyrTyrThrIleThr >>>> T : 288 ! ||||||!!!|||!!.! ||||||!!!||| !|||||| !:!!||| alIleGlyCysThrLeuAsnIleCysPheLeuThrTyrTyrLeuLeuThr++ 279962 : TGATTGGTTGCACGTTGAACATATGCTTTTTGACATATTATTTACTCACGgt...... : 280014 289 : arget Intron 1 >>>> AspTrpGluValAsnAsnThrLeuSerLeuIleThrT : 300 80 bp !!:|||||| !|||:!!.!!:!!.!! !.!!|||| ++GluTrpGluGlnAsnAspAlaIleGlyThrPheThrT 280015 : ...................agGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGT : 280128 301 : yrThrMetLeuLeuLeuSerLeuMetPheAsnIlePheIleLeuCysTyrIleGlyAs : 319 || !|||!!!|||:!!||||||! !||||||:!!|||||||||||||||||||||!! yrLeuMetPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGl 280129 : ATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGA : 280185 320 : pLeuLeuValGluLys >>>> Target Intron 2 >>>> ThrGlyAsnValG : 329 ::!!||| !|||::: 74 bp ! !!!.|||| uIleLeuSerGluGln++ ++CysLeuLysValG 280186 : AATTCTCTCCGAACaggt.........................agTGCTTAAAAGTCG : 280289 330 : lySerLeuCysPheMetIleAspTrpTyrLysPheProValGluThrMetArgSerLe : 348 || !! ! !!:!|||||||||||||||:::!!.|||! !:!!! ! !:!.!!|| lyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLe 280290 : GCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTT : 280346 349 : uIleLeuIleIleAlaMetSerAsnAsnProAlaLysIleThrAlaGlyHisIleAla : 367 ||||||||||.!!|||:!!||||||::! !! !|||:!!||||||||| ! ||| ! uIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIle 280347 : GATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATC : 280403 368 : AspLeuAsnLeuSerThrPheGlyGlyValSer : 378 ||||||::!||||||!:!||| !!.!!|||||| AspLeuSerLeuSerSerPheCysSerValSer 280404 : GATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGT : 280438 vulgar: Lalb_14619 251 378 . KQ414889.1 279903 280438 + 305 M 36 108 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 279904 280438 305 + . gene_id 12 ; sequence Lalb_14619 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 279904 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279904 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280438 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 279904 280438 305 + . alignment_id 12 ; Query Lalb_14619 ; Align 279904 252 108 ; Align 280092 288 111 ; Align 280277 325 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 289 Query range: 9 -> 257 Target range: 274383 -> 275145 10 : TyrIlePheLysIleIleArgTrpIleLeuAsnSerLeuGlyIleTrpPro<-><->S : 27 |||! !!!.:!!:!:! !||||||.!!|||!!. !!:!!||| |||||| | TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaS 274384 : TACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCT : 274441 28 : erLeuPheGluAsnSerAsnGlnPheGlnGlnAsnValSerIleGlyLeuCysAsnVa : 46 ||! ! ! !!!.! !.!.!:!.!!! ..!:!!::: ||| |||||| !! erProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCy 274442 : CGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTG : 274498 47 : lValLeuLeuPheAlaIleValProPheThrLeuHisLeuThrValGluGluLysSer : 65 ! !!:!!|||! !.!!:!!:!!||| !! !!!!|||:!!! !:!!! !!!::!!||| sPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGluSer 274499 : CTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGT : 274555 66 : TrpLysAlaArgValLysLeuIleGlyLeuLeuThrPheCysTrpIleSerLeuPheL : 85 ! !!:!:!!||||||:!!|||! !||| ! !!! !::|||.!! !.!!! LeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleA 274556 : CTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTA : 274615 86 : ysTyrTrpSerLeuValSerCysLysProAsnLeuLysTyrCysIleGluPheIleGl : 104 !.||| !!!|||:!! ! !!!.. !.!.:!!::: !|||:!:||| !!!:|| snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 274616 : ATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCA : 274672 105 : nHisAspTrpArgGluValGluHisSerGluAspArgGluLeuMetLeuLysTyrGly : 123 | ||||||||| ||| ... !!||||||!:!:!!:!!||||||||| !!!.! nThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsnAla 274673 : AACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCG : 274729 124 : AsnValGlyArgAsnLeuThrIleLeuCysLeuValPheMetTyrSerGlyGlyPheM : 143 !!.:!!|||||| !!:!!.!!|||!!!||| !!.!|||||| ! !!!|||! !.!! LysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuC 274730 : AAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCT : 274789 144 : etTyrHisThrIleMetGlnTyrAlaIleGlyThrPhe<->ValAspGluHisAsnAr : 161 ||| !..!|||! !!:!.!!!!: !||| !! |||! .!..!.!.!|| ysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrAr 274790 : GTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAG : 274846 162 : gThrIleLysProLeuValTyrProThrTyrSerGlyLeuPheAspSerGlnAlaSer : 180 ||||:!: ! !||| !! ! !.!!|||!.! !:!! !!! !.!..!!||| gThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThrSer 274847 : AACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGT : 274903 181 : ProPheTyrGluLeuValTyrAlaValHisSerValThrGlyTyrValIleTyrSerI : 200 ||| !!|||:!!||| !||| !!!.! !|||:!!|||!:!:!!:!: !!|||! ProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerS 274904 : CCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGA : 274963 201 : leThrValGlyAlaCysGlyLeuAlaAlaMetPheAlaThrHisIleCysGlyGlnIl : 219 !.!!|||||||||! !.!!|||||||||:!!||||||.!!||| !! !||||||:! erAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLe 274964 : GCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTT : 275020 220 : eAspIleMetIleLeuArgLeuGlnAsnLeuAla<-><->GlnLeuGluGluAsnThr : 236 :..!:!::!!!!::!! !!:!! .!.!!!!.! ... !!!::::||| uSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsnLys 275021 : GAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaa : 275077 237 : AspLeuHis<->ProArgLeuValArgIleValGlnHisHisIleArgMetLeuArgP : 255 ::::::::: !..!:!!! ! !:!!|||:!!||||||:!:|||:!:||||||! AsnValTyrPheSerGluIleGlyValValValGluHisHisLeuArgValLeuArg* 275078 : aatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTCAGGT : 275137 256 : heSerThr : 257 .!!||| **GlyThr 275138 : AAGGTACA : 275145 vulgar: Lalb_14619 9 257 . KQ414889.1 274383 275145 + 289 M 17 51 G 0 6 M 129 387 G 0 3 M 75 225 G 0 6 M 9 27 G 0 3 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274384 275145 289 + . gene_id 13 ; sequence Lalb_14619 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274384 275145 . + . KQ414889.1 exonerate:protein2genome:local exon 274384 275145 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274384 275145 289 + . alignment_id 13 ; Query Lalb_14619 ; Align 274384 10 51 ; Align 274441 27 387 ; Align 274831 156 225 ; Align 275062 231 27 ; Align 275092 240 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 252 Query range: 9 -> 228 Target range: 236852 -> 237512 10 : TyrIlePheLysIleIleArgTrpIleLeuAsnSerLeuGlyIleTrpProSerLeuP : 29 |||! !.!!:!! ! !|||||| :!!!!.|||:!!|||! !||||||..!!!!! TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheS 236853 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCT : 236910 30 : heGluAsnSerAsnGlnPheGlnGlnAsnValSerIleGlyLeuCysAsnValValLe : 48 ..!||| !.!.::! ! ......:!!! !! !! !:!!||| !!..!!.!:! erSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIl 236911 : CGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAAT : 236967 49 : uLeuPheAlaIleValProPheThrLeuHisLeuThrValGluGluLysSerTrpLys : 67 !||||||:!!|||:!!|||! !:!!|||||||||! !:!!|||:!! !!!!!:: ! eLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyr 236968 : ACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTAC : 237024 68 : AlaArgValLysLeuIleGlyLeuLeuThrPheCysTrpIleSerLeuPheLysTyrT : 87 .!!!:!||||||:!!:!!|||! !|||!:! !!! !.!!!!!:!!.!!!..||| ThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrT 237025 : ACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACA : 237084 88 : rpSerLeuValSerCysLysProAsnLeuLysTyrCysIleGluPheIleGlnHisAs : 106 ! !|||:!! ! ! ::: !!.!:!!::::!!! !.!!.!. !!!::!! !|| hrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAs 237085 : CCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGA : 237141 107 : pTrpArgGluValGluHisSerGluAspArgGluLeuMetLeuLysTyrGlyAsnVal : 125 ||||||| !..! ......||| :::|||:::||||||||||||!.!!!. !! pTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPhe 237142 : TTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTT : 237198 126 : GlyArgAsnLeuThrIleLeuCysLeuValPheMetTyrSerGlyGlyPheMetTyrH : 145 .!!||| !! !.!!|||! !||| !:!!|||!!::!!.!!||| !.!! ||| SerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrC 237199 : AGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATT : 237258 146 : isThrIleMetGlnTyrAlaIleGlyThrPheValAspGluHisAsnArgThrIle<- : 164 !..!!!:! !! !.!!! !..! !!|||! !! !:!!!!.! !|||||| ysValMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLe 237259 : GTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTT : 237315 165 : >LysProLeuValTyrProThrTyrSerGlyLeuPheAspSerGlnAlaSerProPhe : 182 ::: !||| !! |||! !|||!.!||||||.!! !.!..!!!:! !!.!. uArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMet 237316 : GCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATG : 237372 183 : TyrGluLeuValTyrAlaValHisSerValThrGlyTyrValIleTyrSerIleThrV : 202 !!!!::!!||| ! ! !!!.! !:!!:!!|||!:!:!! !!!:!! !.!!: AsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaI 237373 : AACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGA : 237432 203 : alGlyAlaCysGlyLeuAlaAlaMetPheAlaThrHisIleCysGlyGlnIleAspIl : 221 !!.!!!.! .!!|||.!!::! .!..!!:!!||| ! !||||||:!:..!:! leSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerVa 237433 : TCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGT : 237489 222 : eMetIleLeuArgLeuGlnAsn : 228 ::!:!!:||| !:!!:!!:!! lValMetLeuSerIleGluAsp 237490 : GGTTATGTTGTCGATCGAAGAT : 237512 vulgar: Lalb_14619 9 228 . KQ414889.1 236852 237512 + 252 M 154 462 G 0 3 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236853 237512 252 + . gene_id 14 ; sequence Lalb_14619 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236853 237512 . + . KQ414889.1 exonerate:protein2genome:local exon 236853 237512 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 236853 237512 252 + . alignment_id 14 ; Query Lalb_14619 ; Align 236853 10 462 ; Align 237318 164 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 220 Query range: 279 -> 378 Target range: 214605 -> 215025 280 : LeuLeuGluTyrTyrThrIleThrAspTrpGluValAsnAsnThrLeuSerLeuIleT : 299 :::::::::::: ::: :!:|||.!. !|||||| ! !!!! !:!!| IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 300 : hrTyrThrMetLeuLeuLeuSerLeuMetPheAsnIlePheIleLeuCysTyrIleGl : 318 |||||..!:!!|||! !:!!|||||| |||||||||||||||...||||||||||| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 319 : yAspLeuLeuValGluLys >>>> Target Intron 1 >>>> ThrGlyAsnV : 328 |!!:|||:!! !|||:!! 123 bp ! !!!.| yGluLeuValSerGluGln++ ++CysLysLysV 214721 : CGAGCTTGTGTCTGAACAGgt.........................agTGCAAAAAGG : 214873 329 : alGlySerLeuCysPheMetIleAspTrpTyrLysPheProValGluThrMetArgSe : 347 |||||..!:!!! !:!||||||!!:||||||::!!!.|||! !.!.! !! !! !!! alGlyGluValSerTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCy 214874 : TCGGAGAAGTATCGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTG : 214930 348 : rLeuIleLeuIleIleAlaMetSerAsnAsnProAlaLysIleThrAlaGlyHisIle : 366 !! !|||||||||!!:||||||||||||::: !!!.!|||.!!|||||||||:!!!!: sCysIleLeuIleMetAlaMetSerAsnSerSerValLysPheThrAlaGlyAsnMet 214931 : TTGCATTTTGATCATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATG : 214987 367 : AlaAspLeuAsnLeuSerThrPheGlyGlyValSer : 378 !.!!!:|||::!:!!|||||||||.!!.!!|||||| ValGluLeuSerIleSerThrPheSerSerValSer 214988 : GTAGAACTGTCTATCAGCACTTTCAGCAGTGTAAGT : 215025 vulgar: Lalb_14619 279 378 . KQ414889.1 214605 215025 + 220 M 45 135 5 0 2 I 0 119 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 215025 220 + . gene_id 15 ; sequence Lalb_14619 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215025 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215025 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 215025 220 + . alignment_id 15 ; Query Lalb_14619 ; Align 214606 280 135 ; Align 214864 325 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 208 Query range: 287 -> 378 Target range: 206050 -> 206404 288 : AspTrpGluValAsnAsnThrLeuSerLeuIleThrTyrThrMetLeuLeuLeuSerL : 307 !!:|||||| !||||||||| !:!!:!!|||..!|||! !! !|||! !:!!|||! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 308 : euMetPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuValGluLys >>> : 325 !! ||| !:!!|||||||||||||||||||||.!.||||||:!!!!::!! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 326 : > Target Intron 1 >>>> ThrGlyAsnValGlySerLeuCysPheMetIleA : 336 81 bp !.! ! !||||||! ! !! !! !! !:!:: ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 337 : spTrpTyrLysPheProValGluThrMetArgSerLeuIleLeuIleIleAlaMetSe : 355 !!||||||:::.!!||| !..! ! !||||||:!!|||||||||||||||||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 356 : rAsnAsnProAlaLysIleThrAlaGlyHisIleAlaAspLeuAsnLeuSerThrPhe : 374 |||| !!||| !|||:!!||||||||| ! !!: !!!::!!::!|||:!!!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 375 : GlyGlyValSer : 378 !! !|||||| ThrAspValSer 206391 : ACCGATGTAAGT : 206404 vulgar: Lalb_14619 287 378 . KQ414889.1 206050 206404 + 208 M 37 111 5 0 2 I 0 77 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206404 208 + . gene_id 16 ; sequence Lalb_14619 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206404 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206404 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206404 208 + . alignment_id 16 ; Query Lalb_14619 ; Align 206051 288 111 ; Align 206243 325 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 287 -> 377 Target range: 272836 -> 273176 288 : AspTrpGluValAsnAsnThrLeuSerLeuIleThrTyrThrMetLeuLeuLeuSerL : 307 :!:||| ! !:!!:!! !! !||||||! !|||||| !|||:!!|||:!!|||: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 308 : euMetPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuValGluLys >>> : 325 !: |||||||||||||||::!||||||||||||!!::!!|||..!|||!:! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 326 : > Target Intron 1 >>>> ThrGlyAsnValGlySerLeuCysPheMetIleA : 336 70 bp ...:::|||..!:!! !!:!|||! : ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 337 : spTrpTyrLysPheProValGluThrMetArgSerLeuIleLeuIleIleAlaMetSe : 355 !!|||||| ! !!.|||! !:!! !!!:! !..!|||||||||||||||:!!! !! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 356 : rAsnAsnProAlaLysIleThrAlaGlyHisIleAlaAspLeuAsnLeuSerThrPhe : 374 !!:! ! ! !|||||||||||||||...|||!.! !:!!::!:!!! !|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 375 : GlyGlyVal : 377 |||! !||| GlyAspVal 273166 : GGCGATGTA : 273176 vulgar: Lalb_14619 287 377 . KQ414889.1 272836 273176 + 183 M 37 111 5 0 2 I 0 66 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273176 183 + . gene_id 17 ; sequence Lalb_14619 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273176 183 + . alignment_id 17 ; Query Lalb_14619 ; Align 272837 288 111 ; Align 273018 325 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 182 Query range: 287 -> 377 Target range: 264537 -> 264885 288 : AspTrpGluValAsnAsnThrLeuSerLeuIleThrTyrThrMetLeuLeuLeuSerL : 307 !!:|||||| !:!:::: :::||| !|||||| !|||:!!|||:!!|||: GluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerM 264538 : GAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATACTGATATCAA : 264595 308 : euMetPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuValGluLys >>> : 325 !! !|||||||||:!!:!!||||||||||||!!::!!|||..!|||::: etCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGln++ 264596 : TGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcaggt... : 264651 326 : > Target Intron 1 >>>> ThrGlyAsnValGlySerLeuCysPheMetIleA : 336 78 bp ! !!!.||||||..!:!! !!:!||| : ++CysLysLysValGlyGluValValTyrMetSerA 264652 : ......................agTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGA : 264760 337 : spTrpTyrLysPheProValGluThrMetArgSerLeuIleLeuIleIleAlaMetSe : 355 !!|||||| ! !!.||| !:!! !!!:! !..!||||||||||||||| !! || snTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLeuIleIleLeuArgSe 264761 : ATTGGTATTACTTACCCTACAAAGATATCCTTGATCTGATTCTCATCATTTTAAGATC : 264817 356 : rAsnAsnProAlaLysIleThrAlaGlyHisIleAlaAspLeuAsnLeuSerThrPhe : 374 |!:! ! !|||.!!||||||||| ! ||| ! !!:!!::!:!!! !|||||| rSerValValPheLysPheThrAlaGlyLysIleLeuHisMetSerMetTyrThrPhe 264818 : CAGCGTGGTGTTTAAATTCACCGCTGGAAAGATACTTCACATGTCCATGTACACATTC : 264874 375 : GlyGlyVal : 377 .!!! !||| SerAspVal 264875 : AGTGACGTA : 264885 vulgar: Lalb_14619 287 377 . KQ414889.1 264537 264885 + 182 M 37 111 5 0 2 I 0 74 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264538 264885 182 + . gene_id 18 ; sequence Lalb_14619 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264538 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264726 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264538 264885 182 + . alignment_id 18 ; Query Lalb_14619 ; Align 264538 288 111 ; Align 264727 325 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 283 -> 378 Target range: 210651 -> 211935 284 : TyrThrIleThrAspTrpGluValAsnAsnThrLeuSerLeuIleThrTyrThrMetL : 303 !:! !:!! !!!:|||!!: !!!.:!! !!:!!||| !:!:||||||! !:!:| PheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValL 210652 : TTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTAC : 210709 304 : euLeuLeuSerLeuMetPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeu{V : 322 ||||| !|||:!!! !|||||||||||||||!!!||||||||||||!!::!!|||{| euLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeu{V 210710 : TCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTG{G : 210766 323 : } >>>> Target Intron 1 >>>> {al}GluLysThrGlyAsnValGlySer : 330 } 999 bp {||} !:!!|||! !!!.||||||..! }-+ +-{al}***GlnThrValLysValGlyGlu 210767 : }ct.........................at{TT}TGACAGACAGTAAAAGTTGGAGAA : 211789 331 : LeuCysPheMetIleAspTrpTyrLysPheProValGluThrMetArgSerLeuIleL : 350 !! !!:!|||||||||||||||::!.!.|||! !:!!! ! ! !:!! !| LysSerTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValValProL 211790 : AAGTCTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACCCT : 211849 351 : euIleIleAlaMetSerAsnAsnProAlaLysIleThrAlaGlyHisIleAlaAspLe : 369 ||!!:|||:!!||||||:!!::: !!.!!|||||||||||||||:!!:!! !! !|| euMetIleSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleValLe 211850 : TGATGATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTTCT : 211906 370 : uAsnLeuSerThrPheGlyGlyValSer : 378 |::::!!|||!:!||||||! !|||||| uSerIleSerSerPheGlyAspValSer 211907 : TTCAATCAGTAGTTTCGGTGACGTAAGt : 211935 vulgar: Lalb_14619 283 378 . KQ414889.1 210651 211935 + 178 M 38 114 S 0 1 5 0 2 I 0 995 3 0 2 S 1 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210652 211935 178 + . gene_id 19 ; sequence Lalb_14619 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 210652 210766 . + . KQ414889.1 exonerate:protein2genome:local exon 210652 210766 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210767 210768 . + . intron_id 1 ; splice_site "CT" KQ414889.1 exonerate:protein2genome:local intron 210767 211765 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 211764 211765 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 211766 211935 . + . KQ414889.1 exonerate:protein2genome:local exon 211766 211935 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210652 211935 178 + . alignment_id 19 ; Query Lalb_14619 ; Align 210652 284 114 ; Align 211768 323 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 287 -> 379 Target range: 244441 -> 244823 288 : AspTrpGluValAsnAsnThrLeuSerLeuIleThrTyrThrMetLeuLeuLeuSerL : 307 !!:|||! !! !!:!:!!.!! !! !|||||||||||| !!!: !|||:!!:!!: GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheIleAlaLeuValAlaI 244442 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTATAGCACTCGTTGCTA : 244499 308 : euMetPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuValGluLys >>> : 325 !!:!:! !|||! !||||||||||||||||||.!!||| !|||..!|||:!! leValSerAsnThrPheIleLeuCysTyrIleSerAspArgLeuThrGluGln++ 244500 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGACAGGCTGACAGAACAGgt... : 244555 326 : > Target Intron 1 >>>> ThrGlyAsnValGlySerLeuCysPheMetIleA : 336 106 bp ! !!!.||||||..!:!! !!:!|||! !| ++CysLeuLysValGlyGluValValTyrMetThrA 244556 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 244692 337 : spTrpTyrLysPheProValGluThrMetArgSerLeuIleLeuIleIleAlaMetSe : 355 |||||||| ! .!.||| !..!! !!!:! !..!||||||||||||||| ! || spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSe 244693 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATC : 244749 356 : rAsnAsnProAlaLysIleThrAlaGlyHisIleAlaAspLeuAsnLeuSerThrPhe : 374 ||||! !!.!:!!|||||||||||| ! :!! ! !!:!!:::|||! !|||||| rAsnMetValValGluIleThrAlaGlyLysValLeuHisMetSerLeuTyrThrPhe 244750 : GAACATGGTCGTTGAAATCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTC : 244806 375 : GlyGlyValSerAsp : 379 |||! !||||||!!: GlyAspValSerGlu 244807 : GGCGATGTAAGTGAA : 244823 vulgar: Lalb_14619 287 379 . KQ414889.1 244441 244823 + 171 M 37 111 5 0 2 I 0 102 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244442 244823 171 + . gene_id 20 ; sequence Lalb_14619 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244442 244552 . + . KQ414889.1 exonerate:protein2genome:local exon 244442 244552 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244553 244554 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244553 244658 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244657 244658 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244659 244823 . + . KQ414889.1 exonerate:protein2genome:local exon 244659 244823 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244442 244823 171 + . alignment_id 20 ; Query Lalb_14619 ; Align 244442 288 111 ; Align 244659 325 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 287 -> 379 Target range: 254071 -> 254439 288 : AspTrpGluValAsnAsnThrLeuSerLeuIleThrTyrThrMetLeuLeuLeuSerL : 307 !!:||| !! !!:!:!!.!!! !! !|||.!!||||||! !:!: !|||:!!:!!: GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaV 254072 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTG : 254129 308 : euMetPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuValGluLysThrGl : 326 !!:!: ||| |||::::::|||||||||.!!||| !|||..!|||:!!..! alValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGlnValGl 254130 : TTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGGTACA : 254186 327 : yAsn{V} >>>> Target Intron 1 >>>> {al}GlySerLeuCysPheMet : 334 !.!.{:} 92 bp {!!}|||..!:!! !!:!||| nGlu{I}-+ ++{le}GlyGluValValTyrMet 254187 : AGAG{A}ct.........................ag{TT}GGTGAAGTGGTTTACATG : 254302 335 : IleAspTrpTyrLysPheProValGluThrMetArgSerLeuIleLeuIleIleAlaM : 354 ! !||||||||| ! .!.||| !..!! !!!:! !..!|||||||||||||||.!! ThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrA 254303 : ACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACAC : 254362 355 : etSerAsnAsnProAlaLysIleThrAlaGlyHisIleAlaAspLeuAsnLeuSerTh : 373 |||||| !!.!:!!|||||||||||| ||| ::::::|||! !|| rgSerAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrTh 254363 : GATCGAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACAC : 254419 374 : rPheGlyGlyValSerAsp : 379 |||||||! !||||||!!: rPheGlyAspValSerGlu 254420 : GTTCGGCGATGTAAGTGAA : 254439 vulgar: Lalb_14619 287 379 . KQ414889.1 254071 254439 + 152 M 40 120 S 0 1 5 0 2 I 0 88 3 0 2 S 1 2 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254072 254439 152 + . gene_id 21 ; sequence Lalb_14619 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254072 254192 . + . KQ414889.1 exonerate:protein2genome:local exon 254072 254192 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254193 254194 . + . intron_id 1 ; splice_site "CT" KQ414889.1 exonerate:protein2genome:local intron 254193 254284 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254283 254284 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254285 254439 . + . KQ414889.1 exonerate:protein2genome:local exon 254285 254439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254072 254439 152 + . alignment_id 21 ; Query Lalb_14619 ; Align 254072 288 120 ; Align 254287 329 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 173 -> 254 Target range: 202712 -> 202960 174 : LeuPheAspSerGlnAlaSerProPheTyrGluLeuValTyrAlaValHisSerValT : 193 :!!.!!||| !::! !|||||| ! !!|||:!! !!!:!:!!:!!!..! !|||. IleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleValA 202713 : ATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAG : 202770 194 : hrGlyTyrValIleTyrSerIleThrValGlyAlaCysGlyLeuAlaAlaMetPheAl : 212 !!! ! !:!!|||:!!.!!:!!||||||||||||||| !!|||.!!|||:!!||||| laValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAl 202771 : CTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGC : 202827 213 : aThrHisIleCysGlyGlnIleAspIleMetIleLeuArgLeuGlnAsnLeuAlaGln : 231 |..!||| !|||||||||!!:|||:!!:!!!!: ! !!|||:!!:!!||| !.!. aValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMetAsp 202828 : GGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGAT : 202884 232 : LeuGluGluAsnThr-----AspLeuHisProArgLeuValArgIleValGlnHisHi : 249 !.....!:!!! !#####:!!:!!:!! !|||:!!|||! !||||||...!!.|| GlyArgSerAspMet#####AsnValAsnGlyArgMetValThrIleValSerGlnHi 202885 : GGTCGTTCGGATATGAGTAAAATGTGAATGGCAGAATGGTGACCATCGTGAGCCAACA : 202943 250 : sIleArgMetLeuArg : 254 |||||||!!:|||!:! sIleArgIleLeuLys 202944 : CATACGGATACTGAAA : 202960 vulgar: Lalb_14619 173 254 . KQ414889.1 202712 202960 + 134 M 63 189 F 0 5 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202713 202960 134 + . gene_id 22 ; sequence Lalb_14619 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202713 202960 . + . KQ414889.1 exonerate:protein2genome:local exon 202713 202960 . + . insertions 0 ; deletions 0 ; frameshifts 5 KQ414889.1 exonerate:protein2genome:local similarity 202713 202960 134 + . alignment_id 22 ; Query Lalb_14619 ; Align 202713 174 189 ; Align 202907 237 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 315 -> 378 Target range: 224472 -> 224661 316 : TyrIleGlyAspLeuLeuValGluLysThrGlyAsnValGlySerLeuCysPheMetI : 335 |||.!! !...|||!!! !! ::: ...:::|||..!:!!! !:!|||| TyrPheLeuSerLeuPhePheProGlnCysGluLysIleGlyGlnValSerTyrMetI 224473 : TATTTTTTATCGCTATTTTTTCCtcagtgtgaaaaaattggacaAGTGTCGTACATGA : 224530 336 : leAspTrpTyrLysPheProValGluThrMetArgSerLeuIleLeuIleIleAlaMe : 354 |||||||||||::!!!. !!! !.!.! !! ! !!!!! !||||||||||||||||| leAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMe 224531 : TCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGAT : 224587 355 : tSerAsnAsnProAlaLysIleThrAlaGlyHisIleAlaAspLeuAsnLeuSerThr : 373 |||||||::! !! !|||:!:|||||||||:!!!!:!.!!!:||| !|||!!!||| tSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThr 224588 : GTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACT : 224644 374 : PheGlyGlyValSer : 378 ||||||! !|||||| PheGlyAspValSer 224645 : TTCGGTGACGTAAGT : 224661 vulgar: Lalb_14619 315 378 . KQ414889.1 224472 224661 + 130 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224473 224661 130 + . gene_id 23 ; sequence Lalb_14619 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224473 224661 . + . KQ414889.1 exonerate:protein2genome:local exon 224473 224661 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224473 224661 130 + . alignment_id 23 ; Query Lalb_14619 ; Align 224473 316 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 326 -> 379 Target range: 238634 -> 238793 327 : AsnValGlySerLeuCysPheMetIleAspTrpTyrLysPheProValGluThrMetA : 346 !!.||||||..!:!! !!:!|||! !||||||||| ! .!.||| !..!! !!!:! LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 238635 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 238692 347 : rgSerLeuIleLeuIleIleAlaMetSerAsnAsnProAlaLysIleThrAlaGlyHi : 365 !..!||||||||||||||| ! |||||| !!.!|||:!!||||||||| ! euAspLeuIleLeuIleIleLysArgSerAsnValValValLysValThrAlaGlyLy 238693 : TCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCACCGCTGGAAA : 238749 366 : sIleAlaAspLeuAsnLeuSerThrPheGlyGlyValSerAsp : 379 :!! ! !!:!!:::|||! !|||||||||! !||||||!!: sValLeuHisMetSerLeuTyrThrPheGlyAspValSerGlu 238750 : AGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAA : 238793 vulgar: Lalb_14619 326 379 . KQ414889.1 238634 238793 + 119 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238635 238793 119 + . gene_id 24 ; sequence Lalb_14619 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238635 238793 . + . KQ414889.1 exonerate:protein2genome:local exon 238635 238793 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238635 238793 119 + . alignment_id 24 ; Query Lalb_14619 ; Align 238635 327 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 287 -> 333 Target range: 224323 -> 224461 288 : AspTrpGluValAsnAsnThrLeuSerLeuIleThrTyrThrMetLeuLeuLeuSerL : 307 :::|||... ::::!! ! !||| !:!:|||||| !!!:||||||:!!|||| GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 308 : euMetPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuValGluLysThrGl : 326 || |||||||||||||||...||||||||||||!!:|||:!!!.!|||:::... euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlnValLy 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggtgaa : 224438 327 : yAsnValGlySerLeuCysPhe : 333 ||| ...||| ||| sAsnPheLeuLysLeuPhePhe 224439 : aaattttttaaaattattcttc : 224461 vulgar: Lalb_14619 287 333 . KQ414889.1 224323 224461 + 117 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224461 117 + . gene_id 25 ; sequence Lalb_14619 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224324 224461 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224461 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224461 117 + . alignment_id 25 ; Query Lalb_14619 ; Align 224324 288 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 287 -> 324 Target range: 219328 -> 219439 288 : AspTrpGluValAsnAsnThrLeuSerLeuIleThrTyrThrMetLeuLeuLeuSerL : 307 !!:|||:!! !|||:!!..! !||| !:!:||||||! !!!:||||||:!!|||| GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 308 : euMetPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuValGluLys : 324 || |||||||||||||||...||||||||||||!!::!!:!!!.!|||:!: euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: Lalb_14619 287 324 . KQ414889.1 219328 219439 + 116 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219439 116 + . gene_id 26 ; sequence Lalb_14619 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219439 116 + . alignment_id 26 ; Query Lalb_14619 ; Align 219329 288 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 185 -> 254 Target range: 202943 -> 203155 186 : ValTyrAlaValHisSerValThrGlyTyrValIleTyrSerIleThrValGlyAlaC : 205 ..!|||!.! ! !:!||| !..! !:!!|||:!!.!!:!!||||||||||||| ThrTyrGlyTyr***AsnValTrpAsnIleLeuIleHisGlyValThrValGlyAlaC 202944 : ACATACGGATACTGAAATGTGTGGAACATCCTAATTCACGGTGTCACTGTAGGAGCTT : 203001 206 : ysGlyLeuAlaAlaMetPheAlaThrHisIleCysGlyGlnIleAspIleMetIleLe : 224 || !!|||.!!|||:!:||||||..!||| !|||||||||!!:|||:!!:!!!!: ysCysLeuThrAlaLeuPheAlaValHisAspCysGlyGlnMetAspValLeuMetAl 203002 : GTTGCTTGACAGCGTTATTTGCGGTTCACGATTGCGGCCAGATGGACGTTTTGATGGC : 203058 225 : uArgLeuGlnAsnLeuAlaGlnLeuGluGluAsn-----ThrAspLeuHisProArgL : 242 ! !!|||:!!:!!||| !.!. !.....!:!!##### !:!!:!!:!! !|||: aTrpLeuGluHisLeuMetAspGlyArgSerAsp#####GlnAsnValAsnGlyArgM 203059 : CTGGCTGGAACATTTGATGGATGGTCGTTCGGATATGAGCAAAATGTGAATGGCAGAA : 203117 243 : euValArgIleValGlnHisHisIleArgMetLeuArg : 254 !!|||! !||||||...!!.|||||||||!!:|||!:! etValThrIleValSerGlnHisIleArgIleLeuLys 203118 : TGGTGACCATCGTGAGCCAACACATACGGATACTGAAA : 203155 vulgar: Lalb_14619 185 254 . KQ414889.1 202943 203155 + 114 M 50 150 F 0 5 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202944 203155 114 + . gene_id 27 ; sequence Lalb_14619 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202944 203155 . + . KQ414889.1 exonerate:protein2genome:local exon 202944 203155 . + . insertions 0 ; deletions 0 ; frameshifts 5 KQ414889.1 exonerate:protein2genome:local similarity 202944 203155 114 + . alignment_id 27 ; Query Lalb_14619 ; Align 202944 186 150 ; Align 203099 236 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 282 -> 324 Target range: 261718 -> 261844 283 : TyrTyrThrIleThrAspTrpGluValAsnAsnThrLeuSerLeuIleThrTyrThrM : 302 :::::: ::: !!:|||! ! !.!.:!!! !! !!:!||| !|||||| !| PhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheM 261719 : ttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCA : 261776 303 : etLeuLeuLeuSerLeuMetPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLe : 321 ||:!!|||:!!:!!:!! ||||||:!!||||||:!!||||||||||||!!::!!|| etMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLe 261777 : TGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACT : 261833 322 : uValGluLys : 324 |..!|||:!! uThrGluGln 261834 : AACGGAACAG : 261844 vulgar: Lalb_14619 282 324 . KQ414889.1 261718 261844 + 109 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261719 261844 109 + . gene_id 28 ; sequence Lalb_14619 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 261719 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261719 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 261719 261844 109 + . alignment_id 28 ; Query Lalb_14619 ; Align 261719 283 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 318 -> 378 Target range: 196633 -> 196813 319 : AspLeuLeuValGluLysThrGlyAsnValGlySerLeuCysPheMetIleAspTrpT : 338 ||||||!!!|||||||||!:!! !!..||||||..! !! !:!.!.!!: |||| AspLeuPheValGluLysSerGluArgValGlyGluThrSerTyrPheMetProTrpT 196634 : gaTTTATTCGTTGAAAAGAGCGAAAGAGTAGGCGAAACGTCGTACTTCATGCCGTGGT : 196691 339 : yrLysPheProValGluThrMetArgSerLeuIleLeuIleIleAlaMetSerAsnAs : 357 || ! .!!|||! !!!: ! !:!!:!:!!! ! !|||||| !! :!!!:!:! yrAspLeuProAspAspLeuAlaLysAsnIleArgThrIleIleLeuArgAlaSerHi 196692 : ACGATCTTCCGGACGATTTAGCCAAGAATATAAGAACGATCATACTAAGAGCCAGTCA : 196748 358 : nProAlaLysIleThrAlaGlyHisIleAlaAspLeuAsnLeuSerThrPheGlyGly : 376 !|||:!!!..:!::!!!.!!.! ! :!: !||||||:::|||..!.!!||| !!! ! sProSerSerLeuSerGlyAlaLysLeuPheAspLeuSerLeuGlnAlaPheCysAsp 196749 : TCCGTCAAGTTTGTCTGGCGCCAAGTTGTTCGATCTTTCGCTTCAAGCATTTTGCGAC : 196805 377 : ValSer : 378 |||||| ValSer 196806 : GTGAGT : 196813 vulgar: Lalb_14619 318 378 . KQ414889.1 196633 196813 + 100 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 196634 196813 100 + . gene_id 29 ; sequence Lalb_14619 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 196634 196813 . + . KQ414889.1 exonerate:protein2genome:local exon 196634 196813 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 196634 196813 100 + . alignment_id 29 ; Query Lalb_14619 ; Align 196634 319 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14635 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1216 Query range: 0 -> 324 Target range: 194150 -> 196572 1 : HisTyrGluSerAspIleAlaPheThrValArgValAlaLysThrLeuLeuThrProI : 20 :!!|||:!!! !|||! !! !!:!.!!|||||||||||||||.!!||||||||||||| AsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProI 194151 : AATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGA : 194208 21 : leGlyIleTrpProLeuArgLysSerAspThrPheLeuAspArgLeuLysLeuTyrAl : 39 |||||||||||||| !:!..!|||:!!.!!! !||||||:!!::!|||!:!|| leGlyIleTrpPro------ArgGluAspSerLeuArgAspArgValArgLeuPheAl 194209 : TCGGTATCTGGCCA------AGGGAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGC : 194259 40 : aHisIleGlyValThrPheThrLeuMetCysTyrLeuLeuValProHisValIleTyr : 58 |!!.! !||||||..!|||.!!|||||||||!:!|||||||||||||||||||||||| aGlnThrGlyValValPheAlaLeuMetCysPheLeuLeuValProHisValIleTyr 194260 : TCAAACTGGCGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTAC : 194316 59 : ThrPheHisAspAlaGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValP : 78 |||!:! !|||..!||||||||||||||||||||||||||||||||||||||||||| ThrTyrPheAspCysGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValP 194317 : ACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGT : 194376 79 : heSerLeuLeuAlaIleMetLysPheTrpThrIleIleIleAsnArgLysAspIleAr : 97 |||||||||||||||||!!:||||||||||||!!:|||:!:|||||||||!!:||||| heSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnArgLysGluIleAr 194377 : TCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAG : 194433 98 : gTyrCysLeuGlnGlnMetGluIleGlnTyrArgAspIleGlnCysGluGluAspArg : 116 |!:!||||||! !:!!||||||! ||||||||||||:!::!!||||||||||||||| gPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCysGluGluAspArg 194434 : ATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGA : 194490 117 : IleValMetLysAsnSerAlaHisValGlyArgPhePheThrThrLeuTyrLeuGlyL : 136 ||||||! !|||!!!||| ! :!!||||||||||||||||||||||||||||||| GlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyL 194491 : CAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGAC : 194550 137 : euSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluArgVa : 155 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||:! euSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluArgIl 194551 : TTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGAT : 194607 156 : lValLysArgAspAsnThrThrGlnIleProLeuProTyrLeuSerAsnTyrValPhe : 174 !||||||..!||||||!:!||||||||||||||||||||||||||||||||||||||| eValLysGluAspAsnSerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhe 194608 : TGTCAAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTC : 194664 175 : TyrValIleGlnAspSerProPheTyrGluIleThrPheValSerGlnIleLeuIleS : 194 !:!!.!|||:!!|||||||||.!!|||||||||||||||||||||||||||||||||| PheAlaIleGluAspSerProIleTyrGluIleThrPheValSerGlnIleLeuIleS 194665 : TTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTA : 194724 195 : erSerIleIleLeuSerThrAsnCysGlyIleTyrSerMetIleAlaThrIleAlaTh : 213 ||||||||||||||||||||||||||||||||||||||:!!:!!||||||||| !! erSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMe 194725 : GCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTAT : 194781 214 : rHisCysCysGlyLeuPheGluValValSerArgGlnIleGluThrMetLeuGluTyr : 232 !||||||||||||||||||||||||..!||||||::!!!:||||||!!:! !! ! ! tHisCysCysGlyLeuPheGluValThrSerArgArgMetGluThrIleSerValPro 194782 : GCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGATGGAGACTATTTCTGTGCCC : 194838 233 : LysGluAlaGluProTyrGluArgLeuLysGluIleIleArgTyrHisLeuLysAlaI : 252 ! ! ! !!!: ! ! ||||||!:!!!::!!:!!!:!!:!||||||||||||| ThrGlyLysAspIleArgGlyArgLeuArgAspValValGlnPheHisLeuLysAlaI 194839 : ACTGGGAAGGATATTCGGGGTAGACTTAGGGACGTCGTTCAGTTTCATCTGAAAGCAA : 194898 253 : le{Gl} >>>> Target Intron 1 >>>> {u}PheAlaGluMetIleGluAs : 260 ||{:!} 1391 bp {!}||||||||||||||||||!! le{Ly}++ ++{s}PheAlaGluMetIleGluLy 194899 : TT{AA}gt.........................ag{a}tTCGCTGAAATGATCGAGAA : 196313 261 : nAlaLeuAsnThrValPheLeuSerGluMetLeuGlyCysThrValIleIleCysPhe : 279 .|||||||||! !||||||||||||||||||||||||||||||:!!|||||||||||| sAlaLeuAsnIleValPheLeuSerGluMetLeuGlyCysThrIleIleIleCysPhe 196314 : AGCACTGAACATCGTGTTTCTATCAGAGATGCTTGGCTGCACTATCATCATATGTTTC : 196370 280 : LeuGluTyrGlyValIleThr >>>> Target Intron 2 >>>> GluTrpSe : 289 ||||||||||||||||||..! 65 bp !!:|||:! LeuGluTyrGlyValIleVal++ ++AspTrpAl 196371 : CTGGAATACGGTGTAATCGTGgt.........................agGATTGGGC : 196465 290 : rAspHisLysIleLeuSerThrMetThrTyrValValLeuMetThrSerIlePheVal : 308 !|||||||||! !||||||! !||||||||| !!|||||||||||||||||||||||| aAspHisLysThrLeuSerMetMetThrTyrPheValLeuMetThrSerIlePheVal 196466 : CGATCACAAGACACTCAGCATGATGACGTACTTCGTTCTGATGACATCGATATTCGTG : 196522 309 : AsnValPheIleIleSerPheIleGlyAspArgLeuLysGlnGlnVal : 324 |||||||||||||||||||||||||||||||||||||||||| ||| AsnValPheIleIleSerPheIleGlyAspArgLeuLysGlnValVal 196523 : AACGTGTTCATAATCTCGTTCATCGGTGATCGTCTTAAACAAGTggta : 196572 vulgar: Lalb_14635 0 324 . KQ414889.1 194150 196572 + 1216 M 24 72 G 2 0 M 226 678 S 0 2 5 0 2 I 0 1387 3 0 2 S 1 1 M 33 99 5 0 2 I 0 61 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194151 196572 1216 + . gene_id 1 ; sequence Lalb_14635 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 194151 194902 . + . KQ414889.1 exonerate:protein2genome:local exon 194151 194902 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 194903 194904 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 194903 196293 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 196292 196293 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 196294 196393 . + . KQ414889.1 exonerate:protein2genome:local exon 196294 196393 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 196394 196395 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 196394 196458 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 196457 196458 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 196459 196572 . + . KQ414889.1 exonerate:protein2genome:local exon 196459 196572 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194151 196572 1216 + . alignment_id 1 ; Query Lalb_14635 ; Align 194151 1 72 ; Align 194223 27 678 ; Align 196295 254 99 ; Align 196459 287 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14635 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 269 Query range: 1 -> 230 Target range: 221360 -> 222050 2 : TyrGluSerAspIleAlaPheThrValArgValAlaLysThrLeuLeuThrProIleG : 21 |||:!!!!!:!!:!: !!!.!:!|||!:!:!!::!::: !:!!|||! !||||||| TyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleG 221361 : TACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCG : 221418 22 : lyIleTrpProLeuArgLysSerAspThrPheLeuAspArgLeuLysLeuTyrAlaHi : 40 ||:!!|||||| ! ! !:! !:!! :!!!!:|||! ! ! !!:: ! lyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLeuIl 221419 : GTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCTGAT : 221475 41 : sIleGlyValThrPheThrLeuMetCysTyrLeuLeuValProHisValIleTyrThr : 59 ! !! !||| !!:!!:!|||!!: !:!|||||||||||| ! !:!!|||..! eAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyrVal 221476 : AAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTG : 221532 60 : PheHisAspAlaGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheS : 79 .!!! !!!:!.!||||||:!! !!.! !!:|||:!!:!:!.! !! ! !|||! IleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheC 221533 : ATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCT : 221592 80 : erLeuLeuAlaIleMetLysPheTrpThrIleIleIleAsnArgLysAspIleArgTy : 98 !!:!!:!!|||.!!:!:|||!:! !:!:|||:!! !!..!!!.||||||||| ! ysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGl 221593 : GCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGA : 221649 99 : rCysLeuGlnGlnMetGluIleGlnTyrArgAspIleGlnCysGluGluAspArgIle : 117 |||:!!:!!!::!!:||| .!.!::!:!:!!||| ! !...:!!|||!:! ! uCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLysAsp 221650 : GTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAGGAT : 221706 118 : ValMetLysAsnSerAlaHisValGlyArgPhePheThrThrLeuTyrLeuGlyLeuS : 137 :!!|||! !.!.!:!||| ! !!|||||| !!.! !! !:!!! ! ! !!!!! IleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheM 221707 : ATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCA : 221766 138 : erTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluArgValVa : 156 !|||.!!||| ::: |||:::||| !:!!|||!!!! !! !:!:!! etTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIlePr 221767 : TGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCC : 221823 157 : lLysArgAsp<->AsnThrThrGlnIleProLeuProTyrLeuSerAsnTyrValPhe : 174 ! !!:!||| |||...||| ||||||:!! !!:!! !! !::: !!.!! oAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPheIle 221824 : TGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATC : 221880 175 : TyrValIleGlnAspSerProPheTyrGluIleThrPheValSerGlnIleLeuIleS : 194 !! !! !!:! !!|||||| ! !!|||||| !||| ! !||||||:!! . ValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaG 221881 : GTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGG : 221940 195 : erSerIleIleLeuSerThrAsnCysGlyIleTyrSerMetIleAlaThrIleAlaTh : 213 !!:!!:!:!!:! !|||! !!..! !.! !! !|||:!!:!!|||! !.!!|||.. lyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaVa 221941 : GTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGT : 221997 214 : rHisCysCysGlyLeuPheGluValValSerArgGlnIleGluThrMetLeu : 230 !|||..!||||||! !.!.:!!|||:!!! !!!! !:!::!! !:!!:!! lHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIle 221998 : GCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATC : 222050 vulgar: Lalb_14635 1 230 . KQ414889.1 221360 222050 + 269 M 158 474 G 0 3 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221361 222050 269 + . gene_id 2 ; sequence Lalb_14635 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221361 222050 . + . KQ414889.1 exonerate:protein2genome:local exon 221361 222050 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221361 222050 269 + . alignment_id 2 ; Query Lalb_14635 ; Align 221361 2 474 ; Align 221838 160 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14635 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 224 Query range: 1 -> 222 Target range: 226912 -> 227578 2 : TyrGluSerAspIleAlaPheThrValArgValAlaLysThrLeuLeuThrProIleG : 21 |||:!!..! !!:!: !.!.!:!:!!!:!:!! !::: !||||||! !|||:!!| TyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuG 226913 : TATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCG : 226970 22 : lyIleTrpProLeuArgLysSerAspThrPheLeuAspArgLeuLysLeuTyrAlaHi : 40 |||||||||||! ! !:::!.!..!:!! :!!! |||! ! ! !!:: ! lyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMe 226971 : GTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGAT : 227027 41 : sIleGlyValThrPheThrLeuMetCysTyrLeuLeuValProHisValIleTyrThr : 59 ! !:!! !!:!.!!|||||| !!!:! !|||||| !! !! !:!:|||..! tGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrVal 227028 : GGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTG : 227084 60 : PheHisAspAlaGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheS : 79 !!! !!:!.!:!!! ! ! !!.! :!!|||:!!|||!.! !!..! !|||! ValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPheP 227085 : GTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCT : 227144 80 : erLeuLeuAlaIleMetLysPheTrpThrIleIleIleAsnArgLysAspIleArgTy : 98 ! !:!!:!!:!!:!:|||!:!! ! !:!:! .!!:!!..! ! ||||||! ! ! heAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGl 227145 : TCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGA : 227201 99 : rCysLeuGlnGlnMetGluIleGlnTyrArgAspIleGlnCysGluGluAspArgIle : 117 |||:!!:!!!:!!!::!! .!.!::!:!:!!|||::!! ! !|||||||||! ! uCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsn 227202 : GTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAAC : 227258 118 : ValMetLysAsnSerAlaHisValGlyArgPhePheThrThrLeuTyrLeuGlyLeuS : 137 |||||| !!..! !|||:!! !|||||| !!.! !|||:!!! ! ! !!!! ValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheV 227259 : GTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCG : 227318 138 : erTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluArgValVa : 156 !!:!...... ::: ::::::|||:!!:!!|||:!!! :!!! !!!!|||!. alPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerValAl 227319 : TCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGC : 227375 157 : lLysArgAsp<->AsnThrThrGlnIleProLeuProTyrLeuSerAsnTyrValPhe : 174 !! !..!||| ||| !!:! ! |||! !:!!|||!:!! !! ! ! :!!.!! aThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIleIle 227376 : AACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATC : 227432 175 : TyrValIleGlnAspSerProPheTyrGluIleThrPheValSerGlnIleLeuIleS : 194 !! !:!!!:: !!||||||||| !!|||||| !||| ! !|||.!!:!!! !. AlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValThrG 227433 : GCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAG : 227492 195 : erSerIleIleLeuSerThrAsnCysGlyIleTyrSerMetIleAlaThrIleAlaTh : 213 !!! !:!::!:! !.!!..!!..! !.! !! !|||||| !||| !:!!|||.. lyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaVa 227493 : GTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGT : 227549 214 : rHisCysCysGlyLeuPheGluValVal : 222 !|||..!||||||! !.!.||||||:!! lHisAlaCysGlyGlnMetGluValLeu 227550 : TCATGCTTGCGGTCAGATGGAGGTGTTG : 227578 vulgar: Lalb_14635 1 222 . KQ414889.1 226912 227578 + 224 M 158 474 G 0 3 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226913 227578 224 + . gene_id 3 ; sequence Lalb_14635 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226913 227578 . + . KQ414889.1 exonerate:protein2genome:local exon 226913 227578 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226913 227578 224 + . alignment_id 3 ; Query Lalb_14635 ; Align 226913 2 474 ; Align 227390 160 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14635 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 208 Query range: 1 -> 231 Target range: 284505 -> 285207 2 : TyrGluSerAspIleAlaPheThrValArgValAlaLysThrLeuLeuThrProIleG : 21 !::!!:!!!||| !!:!!:!|||!:!:!! !::: !!!!|||! !||||||| TrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleG 284506 : TGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTG : 284563 22 : lyIleTrpProLeuArgLysSerAspThrPheLeuAspArgLeuLysLeuTyrAlaHi : 40 ||:!!|||||||||!!! !!!! ||| !|||!!:!:!:!!!..! ! !.!! lyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLe 284564 : GCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCT : 284620 41 : sIleGlyValThrPheThrLeuMetCysTyrLeuLeuValProHisValIleTyrThr : 59 ! !:!!!:!! ! !|||!!: !!!:!|||||||||||| !!.!:!:! !||| uAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThr 284621 : CGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACA : 284677 60 : PheHisAsp<->AlaGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValP : 78 ! ! !||| .!!! |||||| !! ! ! !!:|||:!!|||!.! !!! ! !| ValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerP 284678 : GTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTT : 284737 79 : heSerLeuLeuAlaIleMetLysPheTrpThrIleIleIleAsnArgLysAspIleAr : 97 ||!!!:!!:!!||| !!:|||!:!!::! !:!!||| ..! !! ! ||| ! heCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGl 284738 : TCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGG : 284794 98 : gTyrCysLeuGlnGlnMetGluIleGlnTyrArg<-><-><->AspIleGlnCysGlu : 113 ! ! |||:!!:!!.!.!!:... .!.!:: ! ... !... ||| yGlnCysValLysAspIleArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGlu 284795 : CCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaa : 284851 114 : GluAspArgIleValMetLysAsnSerAlaHisValGlyArgPhePheThrThrLeuT : 133 |||:::||| :::|||!:!:!!||||||...:!!||||||! !!!..!!! !!!!! GluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheC 284852 : gaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCT : 284911 134 : yrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSe : 152 ! !|||!!!! !|||..!|||!.!!!! !||| !! :!::!!|||||| !! ysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysTh 284912 : GCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCAC : 284968 153 : rGluArgValValLysArgAspAsnThrThrGlnIleProLeuProTyrLeuSerAsn : 171 !! !|||..!! !! ! !|||||| !||| !! ! !!! ! !!!:!! !! ! !! rValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyr 284969 : AGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTAT : 285025 172 : TyrValPheTyrValIleGlnAspSerProPheTyrGluIleThrPheValSerGlnI : 191 !! !.!! !! ! !:: !||||||! !:!||||||..! !!! !||| ArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnC 285026 : CGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAAT : 285085 192 : leLeuIleSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerMetIleAlaTh : 210 !||| !:!!! !:!!|||! !|||..!!.! !||| !! !|||:!! !|||.. ysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaVa 285086 : GCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGT : 285142 211 : rIleAlaThrHisCysCysGlyLeuPheGluValValSerArgGlnIleGluThrMet : 229 !.!!!.!! !||| !||||||! !|||..!:!!:!! !! !:!!:!:!!:! !:!: lPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeu 285143 : GTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTC : 285199 230 : LeuGlu : 231 :!!!!: ValAsp 285200 : GTCGAC : 285207 vulgar: Lalb_14635 1 231 . KQ414889.1 284505 285207 + 208 M 61 183 G 0 3 M 46 138 G 0 9 M 123 369 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284506 285207 208 + . gene_id 4 ; sequence Lalb_14635 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284506 285207 . + . KQ414889.1 exonerate:protein2genome:local exon 284506 285207 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284506 285207 208 + . alignment_id 4 ; Query Lalb_14635 ; Align 284506 2 183 ; Align 284692 63 138 ; Align 284839 109 369 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14635 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 207 Query range: 1 -> 231 Target range: 278558 -> 279260 2 : TyrGluSerAspIleAlaPheThrValArgValAlaLysThrLeuLeuThrProIleG : 21 !::.!.!!!||| !!:!!:!|||!:!:!! !::: !!!!|||! !||||||| TrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleG 278559 : TGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTG : 278616 22 : lyIleTrpProLeuArgLysSerAspThrPheLeuAspArgLeuLysLeuTyrAlaHi : 40 ||:!!|||||||||!!! !!!! ||| !|||!!:!:!:!!!..! ! !.!! lyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLe 278617 : GCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCT : 278673 41 : sIleGlyValThrPheThrLeuMetCysTyrLeuLeuValProHisValIleTyrThr : 59 ! !:!!!:!! ! !|||!!: !!!:!|||||||||||| !!.!:!:! !||| uAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThr 278674 : CGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACA : 278730 60 : PheHisAsp<->AlaGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValP : 78 ! ! !||| .!!! |||||| !! ! ! !!:|||:!!|||!.! !!! ! !| ValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerP 278731 : GTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTT : 278790 79 : heSerLeuLeuAlaIleMetLysPheTrpThrIleIleIleAsnArgLysAspIleAr : 97 ||!!! !:!!|||! !!:|||!:!!::! !:!!!!: ..! !! ! ||| ! heCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGl 278791 : TCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGG : 278847 98 : gTyrCysLeuGlnGlnMetGluIleGlnTyrArg<-><-><->AspIleGlnCysGlu : 113 ! ! |||:!!.!..!.!!:...! .!.!:: ! ... !!:: ||| yLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGlu 278848 : CAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaa : 278904 114 : GluAspArgIleValMetLysAsnSerAlaHisValGlyArgPhePheThrThrLeuT : 133 |||:::||| :::|||!:!:!!||||||...:!!||||||! !!!..!!! !!!! GluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheS 278905 : gaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCA : 278964 134 : yrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSe : 152 ! !|||!!!! !|||..!|||!.!:!! !||| ! !:!::!!||||||.!.:! erAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAl 278965 : GCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGC : 279021 153 : rGluArgValValLysArgAspAsnThrThrGlnIleProLeuProTyrLeuSerAsn : 171 !! !|||..!! !! ! !|||||| !||| !! ! !!! ! !!!:!! !! ! !! aValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyr 279022 : AGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTAT : 279078 172 : TyrValPheTyrValIleGlnAspSerProPheTyrGluIleThrPheValSerGlnI : 191 !! !.!! !! ! !:: !||||||! !:!||||||..! !!! !||| ArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnC 279079 : CGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAAT : 279138 192 : leLeuIleSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerMetIleAlaTh : 210 !||| !:!!! !:!!:!!! !|||..!!.! !||| !! !|||:!!||||||.. ysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaVa 279139 : GCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGT : 279195 211 : rIleAlaThrHisCysCysGlyLeuPheGluValValSerArgGlnIleGluThrMet : 229 !.!!!.!! !||| !||||||! !|||..!:!!:!! !! !:!!:!:!!:! !:!: lPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeu 279196 : GTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTC : 279252 230 : LeuGlu : 231 :!!!!: IleAsp 279253 : ATCGAC : 279260 vulgar: Lalb_14635 1 231 . KQ414889.1 278558 279260 + 207 M 61 183 G 0 3 M 46 138 G 0 9 M 123 369 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278559 279260 207 + . gene_id 5 ; sequence Lalb_14635 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278559 279260 . + . KQ414889.1 exonerate:protein2genome:local exon 278559 279260 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278559 279260 207 + . alignment_id 5 ; Query Lalb_14635 ; Align 278559 2 183 ; Align 278745 63 138 ; Align 278892 109 369 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14635 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 0 -> 222 Target range: 256631 -> 257300 1 : HisTyrGluSerAspIleAlaPheThrValArgValAlaLysThrLeuLeuThrProI : 20 :!!!:!:!!||| !!! !! !!:!!:!:!!!:!:!! !::! !!!!|||! !|||| AsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 256632 : AATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTA : 256689 21 : leGlyIleTrpProLeuArgLysSerAspThrPheLeuAspArgLeuLysLeuTyrAl : 39 ||||| !||||||! ! !..!||| !||| !|||!!:||| ! ! ! !!. leGlyAlaTrpProProSerSerSerThrThrThrLeuGluArgAsnValSerIleVa 256690 : TAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGT : 256746 40 : aHisIleGlyValThrPheThrLeuMetCysTyrLeuLeuValProHisValIleTyr : 58 ! ! ! !||| !!:! !! !!!:! !:! !|||:!!||| !:!!:!!:!! lLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIleProCysLeuLeuHis 256747 : TTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCAT : 256803 59 : ThrPheHisAspAlaGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValP : 78 ..!|||! !|||! !!!:..!!!! :::||| ...... !!..! ! ValPheLeuAspAspAspSerPheTyrMetLysValLysAsnPheGlyProMetSerH 256804 : GTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCC : 256863 79 : heSerLeuLeuAlaIleMetLysPheTrpThrIleIleIleAsnArgLysAspIleAr : 97 !!!!:!!:!!::! ! !!.!:! ! !:!::!::!!.!. !!||||||||||| isTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleAr 256864 : ATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACG : 256920 98 : gTyrCysLeuGlnGlnMetGluIleGlnTyrArgAspIleGlnCysGluGluAspArg : 116 |||||||:!!:!!!!.!!:|||! .!.!::||| :!:::! ! |||:!!|||!:! gTyrCysValGluHisIleGluThrAspTrpArgMetValArgArgGluLysAspGln 256921 : CTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAA : 256977 117 : IleValMetLysAsnSerAlaHisValGlyArgPhePheThrThrLeuTyrLeuGlyL : 136 !||||||! !!!.!:!|||... !!||||||!:! ! .!!|||!!!! ! !!.!: GlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaI 256978 : CAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTA : 257037 137 : euSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluArgVa : 155 !!! ! ! .!!|||...... ::: ::: ! ! !!|||! !!!|||! !:! leMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAsnThrGluIleIl 257038 : TCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAAT : 257094 156 : lValLysArgAspAsnThrThrGlnIle<->ProLeuProTyrLeuSerAsnTyrVal : 173 ! ! ! !!:!!.!.|||||| :!: !|||||| ! ! ! !! ! ! eHisValGlyAsnGluThrThrIleValArgValLeuProValThrValTyrLysLys 257095 : TCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAG : 257151 174 : PheTyrValIleGlnAspSerProPheTyrGluIleThrPheValSerGlnIleLeuI : 193 .!.! !:!!.!..!.|||||| !!||||||..! !! !!! !|||! !! ! LeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheMetGlnThrTrpS 257152 : CTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGT : 257211 194 : leSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerMetIleAlaThrIleAl : 212 |||! !||| !!!!!:!!.. !.!!|||!:!|||:!: |||..!.!!|| erSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAlaAlaValPheAl 257212 : CGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGC : 257268 213 : aThrHisCysCysGlyLeuPheGluValVal : 222 |||||||...! !|||! !!!. |||:!! aThrHisAlaTyrGlyGlnLeuThrValLeu 257269 : CACTCATGCGTACGGTCAGTTGACTGTGCTT : 257300 vulgar: Lalb_14635 0 222 . KQ414889.1 256631 257300 + 204 M 164 492 G 0 3 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256632 257300 204 + . gene_id 6 ; sequence Lalb_14635 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256632 257300 . + . KQ414889.1 exonerate:protein2genome:local exon 256632 257300 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256632 257300 204 + . alignment_id 6 ; Query Lalb_14635 ; Align 256632 1 492 ; Align 257127 165 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14635 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 193 Query range: 2 -> 185 Target range: 294672 -> 295224 3 : GluSerAspIleAlaPheThrValArgValAlaLysThrLeuLeuThrProIleGlyI : 22 ..!!:!|||:!:||| !!:!:!!!:! !..!::!! !||||||! !|||||||||: ArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyL 294673 : AGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTC : 294730 23 : leTrpProLeuArgLysSerAspThrPhe<->LeuAspArgLeuLysLeuTyrAlaHi : 40 !!|||||||||! ! ! ||| !!||| ! |||:!!!:!:!! ! ! !! euTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLe 294731 : TTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCT : 294787 41 : sIleGlyValThrPheThrLeuMetCysTyrLeuLeuValProHisValIleTyrThr : 59 |||!.! ! ! ! !:!: !:!:!!||||||||| !! ! !!:! ! uIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCys 294788 : GATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGT : 294844 60 : PheHisAspAlaGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheS : 79 ! ! !!!..::::::::: ||||||:!!:!:!.! !! !:!!!:!| ValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrS 294845 : GTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACT : 294904 80 : erLeuLeuAlaIleMetLysPheTrpThrIleIleIleAsnArgLysAspIleArgTy : 98 ||:!!|||:!!!!::!:!:!!:! ! !:!!:!!:!:!!.! ! ! .!!!:!:! erMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHi 294905 : CTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCA : 294961 99 : rCysLeuGlnGlnMetGluIleGlnTyrArgAspIleGlnCysGluGluAspArgIle : 117 !|||:!!:!!.!.!!:|||! !.!.!::!:! |||.!. ! !||| !!||| sCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAla 294962 : TTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCG : 295018 118 : ValMetLysAsnSerAlaHisValGlyArgPhePheThrThrLeuTyrLeuGlyLeuS : 137 :!!|||! !!.!:!||| ||| !!:! .!.|||..! !!:! ! !:!!! IleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleI 295019 : ATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAA : 295078 138 : erTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluArgValVa : 156 !|||.!!..!|||:!! !!|||||| !|||:::|||......|||... :!!! leTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGl 295079 : TCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGA : 295135 157 : lLysArgAspAsnThrThrGlnIleProLeuProTyrLeuSerAsnTyrValPheTyr : 175 !!!.!:! ! |||!.!||| ! !!|||||| !! !.!! !! ! :!!||| uAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheVal 295136 : GAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTA : 295192 176 : ValIleGlnAspSerProPheTyrGluIle : 185 ! ! ! ! ..!|||||| !||||||||| AspAlaTyrSerSerProThrTyrGluIle 295193 : GACGCTTATTCCAGTCCTACCTACGAGATC : 295224 vulgar: Lalb_14635 2 185 . KQ414889.1 294672 295224 + 193 M 29 87 G 0 3 M 154 462 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294673 295224 193 + . gene_id 7 ; sequence Lalb_14635 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294673 295224 . + . KQ414889.1 exonerate:protein2genome:local exon 294673 295224 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294673 295224 193 + . alignment_id 7 ; Query Lalb_14635 ; Align 294673 3 87 ; Align 294763 32 462 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14635 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 250 -> 324 Target range: 210489 -> 210777 251 : AlaIleGluPheAlaGluMetIleGluAsnAlaLeuAsnThrValPheLeuSerGluM : 270 ..!.!!...||| !! :!!! !|||||| !|||:!! !:!!! |||! !|||| CysPheSerPheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGluM 210490 : TGTTTCAGTTTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAA : 210547 271 : etLeuGlyCysThrValIleIleCysPheLeuGluTyrGlyValIleThr >>>> T : 287 ||:!!|||||||||:!!! !!!:|||||||||! ||| !..!!!:! ! etValGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210548 : TGGTGGGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt...... : 210600 288 : arget Intron 1 >>>> GluTrpSerAspHisLysIleLeuSerThrMetThrT : 299 66 bp ||||||..!..! ! ! !:!!|||!:!:!!|||| ++GluTrpAspSerLysAspProIleSerSerLeuThrT 210601 : ...................agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGT : 210700 300 : yrValValLeuMetThrSerIlePheValAsnValPheIleIleSerPheIleGlyAs : 318 ||:!!||||||:!:||||||:!! !!|||:!!||||||.!!!!!!:!||||||!! yrIleValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGl 210701 : ACATAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGA : 210757 319 : pArgLeuLysGlnGlnVal : 324 : !||| :!!|||||| uValLeuAlaGluGlnVal 210758 : AGTGTTGGCTGAACAggta : 210777 vulgar: Lalb_14635 250 324 . KQ414889.1 210489 210777 + 155 M 36 108 5 0 2 I 0 62 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210490 210777 155 + . gene_id 8 ; sequence Lalb_14635 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 210490 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210490 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210777 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210777 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210490 210777 155 + . alignment_id 8 ; Query Lalb_14635 ; Align 210490 251 108 ; Align 210664 287 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 970 Query range: 35 -> 380 Target range: 217303 -> 219803 36 : IlePheIleProPheGlyLeuPheGlyIlePheGluValGluGlyAlaTyrAsnLysL : 55 :!!|||:!!|||! !..!:!!!:!! !.!!.!!|||||||||! ! !|||:!!|||| LeuPheValProCysSerMetTyrValPheLeuGluValGluAspLeuTyrAspLysL 217304 : CTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGT : 217361 56 : euLysLeuPheGlyProThrSerTyrPheLeuMetValTyrMetLysTyrPheAsnLe : 74 ||||||||||||||||| !! !!:!! !:!!|||!.!!:!:!:||||||!:!::!|| euLysLeuPheGlyProLeuIlePheCysValMetAlaPheValLysTyrTyrSerLe 217362 : TGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCT : 217418 75 : uIleAsnLysIleSerHisPheArgThrCysValGluGlnIleGluSerAspTrpLys : 93 |||| ! ! ! :!! !!.!!||| !||||||..!::!|||||| !!||||||!:! uIleValHisLysAlaAspIleArgGluCysValArgArgIleGluArgAspTrpArg 217419 : GATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGG : 217475 94 : AsnMetSerTyrSerGluAspArgAspIleMetValGluSerAlaIleSerGlyArgA : 113 |||:!:!!!! !..!:!!||||||!!: |||:!!! !!:!|||! !! !||||||! AsnValArgCysGluLysAspArgGluAlaMetIleValAsnAlaAsnPheGlyArgL 217476 : AATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTA : 217535 114 : rgLeuValLysIleCysCysPheLeuSerTyrIleGlyPheValPheTyrTyrValAl : 132 :!|||||| !:!!||| !|||!!!! !|||! !||||||||||||||||||::!|| ysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAl 217536 : AATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcgttttttattacatCGC : 217592 133 : aIleProIleThrThrGlyArgValThrAspProIleHisAsnLeuSerPheValPro : 151 ||||||||||!:!..!||||||:!! !... !! ! ||||||!!!|||:!!||| aIleProIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuThrPheIlePro 217593 : TATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCG : 217649 152 : ThrSerPheProValAlaGlnIleValAlaAspIleArgTyrSerProValAsnGluI : 171 ! !|||||| !!.!!:!! !:!! !|||! !||||||!!!|||..!||||||| LeuValPheProPheThrLysTyrIleIleAspThrArgTyrThrProThrAsnGluI 217650 : TTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCTACGAACGAAA : 217709 172 : lePheLeuAlaGlyGlnValLeuGlyGlyPheValValHisGlyIleAlaValGlyAl : 190 || ! !!! ! !|||:!!:!!!.!||| !:!!:!!|||||||||.!! !!.!|| leValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAl 217710 : TTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGC : 217766 191 : aCysThrTyrAlaAlaValPheAlaValHisAlaCysGlyGlnValLysIleLeuLeu : 209 ||||!:!! ||||||!.!||||||||||||||||||||||||:!!:!!:!:|||:!! aCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGluValLeuMet 217767 : TTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATG : 217823 210 : SerTrpLeuGluHisLeuThrGlyGlyArgThrAspMetSerGluSerValAspAspA : 229 !:!||||||:!!||||||! !! !||||||.!!|||||||||!!:!!!||||||! !| AsnTrpLeuGlnHisLeuIleAspGlyArgAlaAspMetSerAspThrValAspGlyA 217824 : AACTGGCTGCAACATTTAATCGACGGTAGAGCGGATATGAGCGATACTGTGGATGGTA : 217883 230 : rgIleAlaSerIleValSerGlnHisValArgIleLeu{Ly} >>>> Target In : 242 ||||||||||||||||||||||||||||||||||||||{||} 1229 rgIleAlaSerIleValSerGlnHisValArgIleLeu{Ly}++ 217884 : GAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTA{AA}gt.............. : 217926 243 : tron 1 >>>> {s}PheLeuSerAlaAlaGluGluAlaLeuGlnGlnValSerPhe : 256 bp {|}||||||:!! !.!!|||..!.!!|||||||||:!!|||||| ++{s}PheLeuThrLeuThrGluArgThrLeuGlnGlnIleSerPhe 217927 : ...........ag{a}tttttgaCGCTCACAGAGAGAACCCTCCAGCAAATCTCTTTC : 219193 257 : ValGluPheIleGlyCysThrLeuAsnLeuCysPheLeuGlyTyrTyrIleLeuMet : 276 !.!||||||:!!|||||||||:!!:!!:!!|||.!!:!!||||||||||||:!!:!! AlaGluPheLeuGlyCysThrMetAspIleCysLeuValGlyTyrTyrIleIleVal+ 219194 : GCTGAATTTCTAGGATGCACCATGGACATATGTCTCGTTGGATATTACATTATCGTGg : 219253 277 : >>>> Target Intron 2 >>>> GluTrpAspIleHisAspIleThrThrVal : 285 76 bp |||||| ! :!!|||:!!|||!:!!.! + ++GluTrpLysSerAsnAspValThrSerAla 219254 : t.........................agGAATGGAAATCGAATGATGTAACGAGTGCA : 219356 286 : ValSerTyrGlyValIleLeuIleSerIleGlyPheAsnLeuPheIlePheCysTyrI : 305 |||!!!||| !:!!:!!|||||||||:!: ||||||:::|||||||||||||||| ValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrI 219357 : GTGACATACATCATTCTACTTATATCCCTcactttcaacattttcatattttgctaCA : 219416 306 : leGlyGluLeuIleAlaGluGln >>>> Target Intron 3 >>>> CysSer : 314 ||||||||:!!:!!||||||||| 73 bp ||| leGlyGluIleValAlaGluGln++ ++CysArg 219417 : TAGGAGAGATCGTTGCTGAACAggt.........................agTGtagg : 219516 315 : ArgValGlyGluValAlaTyrMetIleAspTrpTyrAsnLeuGlnGlyLysLysLysG : 334 ::::::||||||::::!!|||||||||!!:||||||...||| !||||||||||||! LysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysLysL 219517 : aaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAAAGC : 219576 335 : lnCysLeuIleMetIleIleAlaMetSerAsnSerSerSerLysPheThrAlaGlyGl : 353 !! !:!!:!!! !|||||||||||||||||||||! !|||!!.|||||||||.. euTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAs 219577 : TCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGGAAA : 219633 354 : yMetValGluLeuSerLeuSerThrPheGlyAsp >>>> Target Intron 4 > : 365 !|||||||||||||||:!!||||||||| !||| 87 bp nMetValGluLeuSerIleSerThrPheThrAsp++ 219634 : TATGGTCGAATTGTCTATCAGCACTTTTACCGACgt...................... : 219671 366 : >>> ValValLysThrAlaIleAlaTyrMetAsnMetLeuLeuAlaLeuThr : 380 |||||||||||||||:!!.!!!:!:!!|||:!:|||! !.!!|||||| ++ValValLysThrAlaValThrPheLeuAsnValLeuArgThrLeuThr 219672 : ...agGTCGTTAAGACTGCAGTCACGTTTCTGAATGTACTACGAACATTGACT : 219803 vulgar: Lalb_14633 35 380 . KQ414889.1 217303 219803 + 970 M 206 618 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 37 111 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 83 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217304 219803 970 + . gene_id 1 ; sequence Lalb_14633 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217304 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217304 217923 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219668 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219668 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219669 219670 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219669 219755 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 219754 219755 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219756 219803 . + . KQ414889.1 exonerate:protein2genome:local exon 219756 219803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217304 219803 970 + . alignment_id 1 ; Query Lalb_14633 ; Align 217304 36 618 ; Align 219154 243 99 ; Align 219329 276 111 ; Align 219513 313 156 ; Align 219756 365 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 923 Query range: 35 -> 365 Target range: 213001 -> 215022 36 : IlePheIleProPheGlyLeuPheGlyIlePheGluValGluGlyAlaTyrAsnLysL : 55 :!! ! ||||||! !.!!|||!:!! !.!!.!!!!:||||||... :::...:::: LeuValIleProCysSerLeuTyrValPheLeuAspValGluAsnIlePheLysGluI 213002 : CTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaagaga : 213059 56 : euLysLeuPheGlyProThrSerTyrPheLeuMetValTyrMetLysTyrPheAsnLe : 74 !!:!!||||||||| ! !:!!!:!! !:!! !.! !|||||| !:::|| leGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLe 213060 : TCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTT : 213116 75 : uIleAsnLysIleSerHisPheArgThrCysValGluGlnIleGluSerAspTrpLys : 93 |||| ! ! !..! !!.!!|||||||||||||||!!.!!::!!! !||||||||| uIleLeuHisGlyAspAspIleArgThrCysValGluHisMetLysTyrAspTrpLys 213117 : GATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAG : 213173 94 : AsnMetSerTyrSerGluAspArgAspIleMetValGluSerAlaIleSerGlyArgA : 113 |||!!:!!!:!!..!||||||!:!!!:||||||!.! !!:!|||! !! !|||!:!| AsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysA 213174 : AATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGA : 213233 114 : rgLeuValLysIleCysCysPheLeuSerTyrIleGlyPheValPheTyrTyrValAl : 132 ||:!!|||! !||||||..!|||!!!! !|||! !||||||..!||||||!:!:!!!. rgIleValThrIleCysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuVa 213234 : GGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGT : 213290 133 : aIleProIleThrThrGlyArgValThrAspProIleHisAsnLeuSerPheValPro : 151 !:!!||||||!:!.!!! !!:!:!!..!! ! !! !|||:!!!!!||| !! ! lValProIleSerAlaAspLysMetValAlaGluAspLeuAsnValThrPheArgGln 213291 : CGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAA : 213347 152 : ThrSerPheProValAlaGlnIleValAlaAspIleArgTyrSerProValAsnGluI : 171 ! ! ! !!||||||:!!::!.!!:!!!.!|||:!!|||||||||||||||||||||| MetValValProValSerArgPheIleValAspValArgTyrSerProValAsnGluI 213348 : ATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGA : 213407 172 : lePheLeuAlaGlyGlnValLeuGlyGlyPheValValHisGlyIleAlaValGlyAl : 190 |||||!!! ! !|||:!!:!!!.!||| ! :!!:!!|||!.!|||||||||! !|| lePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAl 213408 : TATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGC : 213464 191 : aCysThrTyrAlaAlaValPheAlaValHisAlaCysGlyGlnValLysIleLeuLeu : 209 ||||!:!! |||||||||||||||||||||||||||||||||:!! ||||||:!! aCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMet 213465 : TTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATG : 213521 210 : SerTrpLeuGluHisLeuThrGlyGlyArgThrAspMetSerGluSerValAspAspA : 229 ||||||||||||||||||! !! !|||||| !|||||||||:!!!:!|||||||||| SerTrpLeuGluHisLeuIleAspGlyArgGluAspMetSerLysAsnValAspAspA 213522 : AGCTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGCAAGAATGTGGACGACA : 213581 230 : rgIleAlaSerIleValSerGlnHisValArgIleLeu{Ly} >>>> Target In : 242 |||||||| !||||||!:!||||||||||||||||||{||} 840 rgIleAlaValIleValAsnGlnHisValArgIleLeu{Ly}++ 213582 : GAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTG{AA}gt.............. : 213624 243 : tron 1 >>>> {s}PheLeuSerAlaAlaGluGluAlaLeuGlnGlnValSerPhe : 256 bp {|}||||||..! !!.!|||:!!||||||!:!|||||||||||| ++{s}PheLeuGluLeuValGluLysAlaLeuArgGlnValSerPhe 213625 : ...........ag{A}TTCTTAGAGCTCGTGGAGAAAGCACTTCGGCAAGTATCTTTC : 214502 257 : ValGluPheIleGlyCysThrLeuAsnLeuCysPheLeuGlyTyrTyrIleLeuMet : 276 !.!|||!!.:!!! !||||||:!!|||||||||.!!:!!||||||||||||:!!! ! AlaGluLeuLeuValCysThrValAsnLeuCysLeuValGlyTyrTyrIleIleThr+ 214503 : GCTGAATTATTAGTATGCACGGTGAATCTCTGTCTCGTTGGATATTACATAATAACGg : 214562 277 : >>>> Target Intron 2 >>>> GluTrpAspIleHisAspIleThrThrVal : 285 68 bp ||||||:!! :!!:!!:!!||||||..! + ++GluTrpAsnSerAsnAsnLeuThrThrThr 214563 : t.........................aggAATGGAATTCGAACAATTTAACAACTACA : 214657 286 : ValSerTyrGlyValIleLeuIleSerIleGlyPheAsnLeuPheIlePheCysTyrI : 305 |||!!!|||! !|||:!:! !||||||::: ||||||:::|||||||||||||||| ValThrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrI 214658 : GTAACTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCA : 214717 306 : leGlyGluLeuIleAlaGluGln >>>> Target Intron 3 >>>> CysSer : 314 |||||||||||:!::!!|||||| 123 bp |||!.! leGlyGluLeuValSerGluGln++ ++CysLys 214718 : TAGGCGAGCTTGTGTCTGAACAGgt.........................agTGCAAA : 214867 315 : ArgValGlyGluValAlaTyrMetIleAspTrpTyrAsnLeuGlnGlyLysLysLysG : 334 !:!||||||||||||:!!|||||||||!!:||||||...|||! !|||!!.||||||! LysValGlyGluValSerTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysL 214868 : AAGGTCGGAGAAGTATCGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGC : 214927 335 : lnCysLeuIleMetIleIleAlaMetSerAsnSerSerSerLysPheThrAlaGlyGl : 353 |||! !|||:!!|||!!:|||||||||||||||||| !|||||||||||||||.. euCysCysIleLeuIleMetAlaMetSerAsnSerSerValLysPheThrAlaGlyAs 214928 : TCTGTTGCATTTTGATCATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAA : 214984 354 : yMetValGluLeuSerLeuSerThrPheGlyAspVal : 365 !|||||||||||||||:!!|||||||||.!!..!||| nMetValGluLeuSerIleSerThrPheSerSerVal 214985 : CATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215022 vulgar: Lalb_14633 35 365 . KQ414889.1 213001 215022 + 923 M 206 618 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 M 33 99 5 0 2 I 0 64 3 0 2 M 37 111 5 0 2 I 0 119 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 213002 215022 923 + . gene_id 2 ; sequence Lalb_14633 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 213002 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 213002 213621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 213002 215022 923 + . alignment_id 2 ; Query Lalb_14633 ; Align 213002 36 618 ; Align 214463 243 99 ; Align 214630 276 111 ; Align 214864 313 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 923 Query range: 36 -> 374 Target range: 227062 -> 230433 37 : PheIleProPheGlyLeuPheGlyIlePheGluValGluGlyAlaTyrAsnLysLeuL : 56 !!.:!! !! !||||||!:!! !:!!.!.||||||:!!||||||||||||! !|||| LeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuL 227063 : TTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGA : 227120 57 : ysLeuPheGlyProThrSerTyrPheLeuMetValTyrMetLysTyrPheAsnLeuIl : 75 ||:!!.!!||||||! !|||!:!||| !||| ! !:!:||||||! !! |||! ysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuTh 227121 : AAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGAC : 227177 76 : eAsnLysIleSerHisPheArgThrCysValGluGlnIleGluSerAspTrpLysAsn : 94 ! ! ..! !!.!!! ! !|||||||||!:!|||:!!!!!|||||||||||| rPheHisGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsn 227178 : GTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAAT : 227234 95 : MetSerTyrSerGluAspArgAspIleMetValGluSerAlaIleSerGlyArgArgL : 114 !!:!!!||| !|||||||||:!!:!:|||||| !! !||| !! !||||||!:!| IleArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysL 227235 : ATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAAT : 227294 115 : euValLysIleCysCysPheLeuSerTyrIleGlyPheValPheTyrTyrValAlaIl : 133 ||:!!! |||||| |||!!! !!:!! ...|||||||||:::|||:!!!.!:! euIleThrIleCysThrPhePheValPheSerSerPheValPhePheTyrIleValVa 227295 : TGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGT : 227351 134 : eProIleThrThrGlyArgValThrAspProIleHisAsnLeuSerPheValProThr : 152 !||||||!.!.!!|||!!!|||.!! ! ! |||! !|||!:!:!!! !! ! lProIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMet 227352 : ACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATG : 227408 153 : SerPheProValAlaGlnIleValAlaAspIleArgTyrSerProValAsnGluIleP : 172 !!|||||| !! !!:!!|||:!!||||||:!!|||||||||||| !!|||||||||| ProPheProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIleP 227409 : CCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCT : 227468 173 : heLeuAlaGlyGlnValLeuGlyGlyPheValValHisGlyIleAlaValGlyAlaCy : 191 ||!!!:!!! !||| !!:!! !|||.!!|||:!!||||||:!!.!! !!.!||||| hePheSerValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCy 227469 : TCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTG : 227525 192 : sThrTyrAlaAlaValPheAlaValHisAlaCysGlyGlnValLysIleLeuLeuSer : 210 |!:! ||||||:!!.!!|||||||||||||||||||||:!!:!!:!:|||:!!||| sSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSer 227526 : CAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCC : 227582 211 : TrpLeuGluHisLeuThrGlyGlyArgThrAspMetSerGluSerValAspAspArgI : 230 ||||||! !||||||! !! !||||||.!!|||||||||:!!!!!:!!|||||||||| TrpLeuGlyHisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAspAspArgI 227583 : TGGCTGGGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGATGATAGAA : 227642 231 : leAlaSerIleValSerGlnHisValArgIleLeu{Ly} >>>> Target Intro : 242 ||||||||||||||!!!!!.|||||||||||||||{!!} 396 bp leAlaSerIleValThrHisHisValArgIleLeu{As}++ 227643 : TCGCTAGCATCGTCACTCACCACGTTCGAATATTG{AA}gt................. : 227682 243 : n 1 >>>> {s}PheLeuSerAlaAlaGluGluAlaLeuGlnGlnValSerPheVal : 257 {.}||||||:!! ! !|||:!!.!!:!!||||||:!!:!!|||||| ++{n}PheLeuAlaLeuIleGluLysThrMetGlnGlnIleAlaPheVal 227683 : ........ag{C}TTTCTGGCCCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTA : 228119 258 : GluPheIleGlyCysThrLeuAsnLeuCysPheLeuGlyTyrTyrIleLeuMet >> : 276 ||||||:!!|||||||||:!!! !||||||.!!:!!! !|||||||||:!!! ! GluPheLeuGlyCysThrIleIleLeuCysLeuIleGluTyrTyrIleIleThr++ 228120 : GAATTTTTAGGGTGTACAATAATTCTGTGCCTCATCGAGTATTACATCATAACGgt.. : 228178 277 : >> Target Intron 2 >>>> GluTrpAspIleHisAspIleThrThrValVal : 286 72 bp ||||||:!! ! !!::!!||| !!.!||| ++GluTrpAsnProLysGluLeuThrPheAlaVal 228179 : .......................agGAATGGAATCCGAAAGAGTTAACATTTGCTGTA : 228278 287 : SerTyrGlyValIleLeuIleSerIleGlyPheAsnLeuPheIlePheCysTyrIleG : 306 !!!|||..!!.!:!!|||:!!|||.!! ||||||:::||||||||||||||||||| ThrTyrSerAlaLeuLeuLeuSerPheThrPheAsnIlePheIlePheCysTyrIleG 228279 : ACTTACTCAGCGTTACTTTTATCCTTTAccttcaatattttcatattttgttaTATAG : 228338 307 : lyGluLeuIleAlaGluGln >>>> Target Intron 3 >>>> CysSerArg : 315 |||||:!!:!!||||||!!. 1889 bp |||!!!!:! lyGluIleValAlaGluHis++ ++CysArgLys 228339 : GAGAAATTGTTGCCGAACACgt.........................agTGCAGAAAA : 230254 316 : ValGlyGluValAlaTyrMetIleAspTrpTyrAsnLeuGlnGlyLysLysLysGlnC : 335 ||||||||| !:!!|||||||||!!:||||||...||| |||!!.||||||! | ValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyAsnLysLysLeuC 230255 : GTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAAACAAGAAGCTCT : 230314 336 : ysLeuIleMetIleIleAlaMetSerAsnSerSerSerLysPheThrAlaGlyGlyMe : 354 ||! !|||:!!||||||||||||||||||!!!|||!!!|||||||||||||||..!|| ysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheThrAlaGlyAsnMe 230315 : GTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTACAGCAGGAAACAT : 230371 355 : tValGluLeuSerLeuSerThrPheGlyAspValValLysThrAlaIleAlaTyrMet : 373 |||||||||||||:!!!:!||||||.!!|||||| !! ! ! ! !!.!|||! ! tValGluLeuSerValAsnThrPheSerAspValSerIleIlePheSerValTyrThr 230372 : GGTTGAATTATCCGTAAACACTTTCAGCGACGTAAGTATCATATTCTCTGTTTACACG : 230428 374 : Asn : 374 ||| Asn 230429 : AAT : 230433 vulgar: Lalb_14633 36 374 . KQ414889.1 227062 230433 + 923 M 205 615 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 227063 230433 923 + . gene_id 3 ; sequence Lalb_14633 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 227063 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 227063 227679 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 227063 230433 923 + . alignment_id 3 ; Query Lalb_14633 ; Align 227063 37 615 ; Align 228077 243 99 ; Align 228248 276 111 ; Align 230248 313 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 852 Query range: 35 -> 368 Target range: 208341 -> 211941 36 : IlePheIleProPheGlyLeuPheGlyIlePheGluValGluGlyAlaTyrAsnLysL : 55 ||| ! |||||| !|||:!!|||!.!|||.!!! !||||||! ! !|||:!!:!!| IleValIleProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnL 208342 : ATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAAT : 208399 56 : euLysLeuPheGlyProThrSerTyrPheLeuMetValTyrMetLysTyrPheAsnLe : 74 |||||:!!! !.!! !! !|||!:!|||:!!|||!.!!:!! !|||||| ! ! !:! euLysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMe 208400 : TAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCAT : 208456 75 : uIleAsnLysIleSerHisPheArgThrCysValGluGlnIleGluSerAspTrpLys : 93 !! ! !::: .!! !!.!.|||! !||||||||| ! :!!|||:!!||||||!:! tThrValArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArg 208457 : GACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGA : 208513 94 : AsnMetSerTyrSerGluAspArgAspIleMetValGluSerAlaIleSerGlyArgA : 113 |||:!!..!:!!..!||||||||| ! ||||||:!!!!:!:!|||! !! !!.!|||! AsnValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgL 208514 : AACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGA : 208573 114 : rgLeuValLysIleCysCysPheLeuSerTyrIleGlyPheValPheTyrTyrValAl : 132 :!|||:!! !|||||| ! !!!!! !||| !||| :::|||||||||:!!|| ysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAl 208574 : AACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGC : 208630 133 : aIleProIleThrThrGlyArgValThrAspProIleHisAsnLeuSerPheValPro : 151 |:!:|||:!!||| !! !!:!|||..!!!: ! ! !||||||!!!!:! ! ! aLeuProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArg 208631 : TTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGG : 208687 152 : ThrSerPheProValAlaGlnIleValAlaAspIleArgTyrSerProValAsnGluI : 171 ! !!:!|||||| !!:!!.!!:!! !|||:!!|||||||||||||||||||||| LeuValTyrProValProLysPheIleLeuAspValArgTyrSerProValAsnGluI 208688 : CTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGA : 208747 172 : lePheLeuAlaGlyGlnValLeuGlyGlyPheValValHisGlyIleAlaValGlyAl : 190 |||||! !.!!! !|||:!!|||..!|||||||||!.!|||..!|||.!!|||||||| lePheTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAl 208748 : TTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGC : 208804 191 : aCysThrTyrAlaAlaValPheAlaValHisAlaCysGlyGlnValLysIleLeuLeu : 209 |||| !! ||||||:!!.!!|||:!!|||||||||||||||:!!:!!||||||:!! aCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMet 208805 : TTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATG : 208861 210 : SerTrpLeuGluHisLeuThrGlyGlyArgThrAspMetSerGluSerValAspAspA : 229 ||||||:!!||| ! |||..!! !|||||| !||| !..!:!!!:!:!!|||.!.| SerTrpMetGluLysLeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnA 208862 : TCCTGGATGGAGAAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGA : 208921 230 : rgIleAlaSerIleValSerGlnHisValArgIleLeu{Ly} >>>> Target In : 242 ||:!:|||!:!||||||..!||||||||||||:!::!!{!!} 1536 rgLeuAlaAsnIleValGluGlnHisValArgValIle{As}++ 208922 : GGTTGGCTAATATCGTGGAGCAGCATGTTCGAGTGATC{AA}gt.............. : 208964 243 : tron 1 >>>> {s}PheLeuSerAlaAlaGluGluAlaLeuGlnGlnValSerPhe : 256 bp {.}|||:!!:!! !.!!|||.!. !|||!!.:!!:!!|||!!. ++{n}PheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeu 208965 : ...........ag{T}TTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTG : 210538 257 : ValGluPheIleGlyCysThrLeuAsnLeuCysPheLeuGlyTyrTyrIleLeuMet : 276 :!!|||.!.:!:|||||||||||||||:!!||||||||||||||||||! :!!!!: IleGluMetValGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle+ 210539 : ATAGAAATGGTGGGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTg : 210598 277 : >>>> Target Intron 2 >>>> GluTrpAspIleHisAspIleThrThrVal : 285 66 bp ||||||||| ! ! ||| !! !!:! ! + ++GluTrpAspSerLysAspProIleSerSer 210599 : t.........................agGAATGGGACTCTAAAGACCCTATCAGCAGT : 210691 286 : ValSerTyrGlyValIleLeuIleSerIleGlyPheAsnLeuPheIlePheCysTyrI : 305 :!!!!!||| !|||:!!|||! !|||:!! !||||||:!!|||||||||||||||| LeuThrTyrIleValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrI 210692 : CTGACGTACATAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACA : 210751 306 : leGlyGluLeuIleAlaGluGln >>>> Target Intron 3 >>>> CysSer : 314 ||||||||:!!:!:||||||||| 999 bp ! leGlyGluValLeuAlaGluGln++ ++ThrVal 210752 : TCGGTGAAGTGTTGGCTGAACAggt.........................agACAGTA : 211777 315 : ArgValGlyGluValAlaTyrMetIleAspTrpTyrAsnLeuGlnGlyLysLysLysG : 334 !:!||||||||| !:!!||||||||||||||||||...:!!! !||||||||| LysValGlyGluLysSerTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyL 211778 : AAAGTTGGAGAAAAGTCTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTT : 211837 335 : lnCysLeuIleMetIleIleAlaMetSerAsnSerSerSerLysPheThrAlaGlyGl : 353 ! !:!! !:!!!!:|||:!!||||||:!!|||!!!!!!|||.!!|||||||||.. euValValProLeuMetIleSerMetSerHisSerThrThrLysIleThrAlaGlyAs 211838 : TGGTCGTACCCTTGATGATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAA : 211894 354 : yMetValGluLeuSerLeuSerThrPheGlyAspValValLysThr : 368 !:!::!!! ||||||:!!|||!:!|||||||||||| ||| nLeuIleValLeuSerIleSerSerPheGlyAspValSerValThr 211895 : TCTCATCGTTCTTTCAATCAGTAGTTTCGGTGACGTAAGtgttaca : 211941 vulgar: Lalb_14633 35 368 . KQ414889.1 208341 211941 + 852 M 206 618 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 995 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208342 211941 852 + . gene_id 4 ; sequence Lalb_14633 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208342 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208342 208961 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211941 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211941 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208342 211941 852 + . alignment_id 4 ; Query Lalb_14633 ; Align 208342 36 618 ; Align 210499 243 99 ; Align 210664 276 111 ; Align 211774 313 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 602 Query range: 35 -> 244 Target range: 221507 -> 222134 36 : IlePheIleProPheGlyLeuPheGlyIlePheGluValGluGlyAlaTyrAsnLysL : 55 :!!!!.:!!|||! !.!!|||!:!! !|||.!!|||||||||! !!.!||||||!:!: LeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspValTyrAsnArgI 221508 : CTCTTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAA : 221565 56 : euLysLeuPheGlyProThrSerTyrPheLeuMetValTyrMetLysTyrPheAsnLe : 74 !!||||||!!.|||||| !|||!:!! !:!!|||!.!!:!:!:|||||| ! || leLysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLe 221566 : TCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTT : 221622 75 : uIleAsnLysIleSerHisPheArgThrCysValGluGlnIleGluSerAspTrpLys : 93 |||| ! ! !:! !!.!!||| !|||:!!|||!::||||||!!!||||||||| uIleLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTrpAspTrpLys 221623 : GATACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAG : 221679 94 : AsnMetSerTyrSerGluAspArgAspIleMetValGluSerAlaIleSerGlyArgA : 113 |||!!:!!!||||||:!!|||!:!|||||||||:!!|||!:!||||||! !||||||| AsnIleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIlePheGlyArgA 221680 : AATATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGC : 221739 114 : rgLeuValLysIleCysCysPheLeuSerTyrIleGlyPheValPheTyrTyrValAl : 132 |||||:!!! !|||||| |||!!!! !|||! !||||||||||||||||||::!|| rgLeuIleMetIleCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAl 221740 : GATTGATCATGATCTGCACATTTTTCATGTACAGTggtttcgttttttattacatAGC : 221796 133 : aIleProIleThrThrGlyArgValThrAspProIleHisAsnLeuSerPheValPro : 151 |||||||.!!!:!..!|||!:!:!! !!! ! ! ! |||::::::|||:::||| aIleProPheSerValGlyLysIleProAlaGlnAspValAsnValThrPheIlePro 221797 : CATACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCA : 221853 152 : ThrSerPheProValAlaGlnIleValAlaAspIleArgTyrSerProValAsnGluI : 171 ! ! !|||||| !!:!!::!.!!:!!!.!|||! !|||||||||||||||||||||| MetValPheProPheSerArgPheIleValAspThrArgTyrSerProValAsnGluI 221854 : ATGGTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGA : 221913 172 : lePheLeuAlaGlyGlnValLeuGlyGlyPheValValHisGlyIleAlaValGlyAl : 190 ||.!.!!!:!! !|||:!!:!!!.!||| !:!!:!!|||.!!|||.!! !!.!|| leLeuPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAl 221914 : TTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGC : 221970 191 : aCysThrTyrAlaAlaValPheAlaValHisAlaCysGlyGlnValLysIleLeuLeu : 209 ||||!:!! !.!|||:!!||||||||||||||||||||||||:!!:!!:!:|||:!! aCysSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMet 221971 : TTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATG : 222027 210 : SerTrpLeuGluHisLeuThrGlyGlyArgThrAspMetSerGluSerValAspAspA : 229 |||||||||:!!||||||! !..!||||||.!!||||||!!!.!.!:!|||||| | SerTrpLeuLysHisLeuIleAsnGlyArgAlaAspMetCysAsnAsnValAspArgA 222028 : AGCTGGCTGAAACATTTGATCAACGGCCGGGCGGATATGTGTAACAACGTGGATAGGA : 222087 230 : rgIleAlaSerIleValSerGlnHisValArgIleLeuLysPheLeu : 244 ||||||||!.!||||||!:!||||||||||||||||||:!!!:!:!! rgIleAlaLysIleValAsnGlnHisValArgIleLeuGlnTyrVal 222088 : GAATAGCGAAGATTGTGAATCAACACGTTCGAATATTGCAGTATGTA : 222134 vulgar: Lalb_14633 35 244 . KQ414889.1 221507 222134 + 602 M 209 627 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221508 222134 602 + . gene_id 5 ; sequence Lalb_14633 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221508 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221508 222134 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221508 222134 602 + . alignment_id 5 ; Query Lalb_14633 ; Align 221508 36 627 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 574 Query range: 30 -> 365 Target range: 303304 -> 305783 31 : LeuGluThrLeuValIlePheIleProPheGlyLeuPheGlyIlePheGluValGluG : 50 |||! !||| !!! ! ! ||||||! ! !||| ! !||||||||| !:!!! LeuValLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnLysA 303305 : TTGGTTCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAAAGG : 303362 51 : lyAlaTyrAsnLysLeuLysLeuPheGlyProThrSerTyrPheLeuMetValTyrMe : 69 !.!! ! !:!|||||||||||||||! ! !|||!:!! !|||!!: !! || spThrIleIleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLeuMe 303363 : ATACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTTGAT : 303419 70 : tLysTyrPheAsnLeuIleAsnLysIleSerHisPheArgThrCysValGluGlnIle : 88 |||||||!:: !||| !!..::!! ! !!....!!!:! !|||:!!|||:!!:!: tLysTyrTrpAlaLeuAlaThrArgLysProArgIleLysGluCysIleGluGluVal 303420 : GAAGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAGGTG : 303476 89 : GluSerAspTrpLysAsn >>>> Target Intron 1 >>>> MetSerTyrSe : 98 :!!||||||||||||.!. 938 bp :!!..!! ! GlnSerAspTrpLysGlu++ ++ValGluSerLe 303477 : CAAAGTGATTGGAAAGAGgt.........................agGTGGAATCTCT : 304444 99 : rGluAspArgAspIleMetValGluSerAlaIleSerGlyArgArgLeuValLysIle : 117 !..!||||||!!:!!:|||:!!:!!! !!.! !! !||||||!.!|||..!! !||| uArgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIle 304445 : CAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAATC : 304501 118 : CysCysPheLeuSerTyrIleGlyPheValPheTyrTyrValAlaIleProIleThrT : 137 |||..!.!.!!!! !|||! !||| !..!.!!|||:!!..!!.!!!:! !.!!.!!| CysAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheAlaT 304502 : TGCGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCGA : 304561 138 : hrGlyArgValThrAspProIleHisAsnLeuSerPheValProThrSerPheProVa : 156 |||||! ! !..!||| ! :!!|||! !!!!.!! !||| ! !!:!|||.. hrGlyThrTyrValAspGlu---TyrAsnArgThrIleLysProLeuValTyrProTh 304562 : CCGGAACGTATGTGGATGAG---TATAATCGTACGATTAAACCGCTCGTCTATCCCAC : 304615 157 : lAlaGlnIleValAlaAspIleArgTyrSerProValAsnGluIlePheLeuAlaGly : 175 ! !... !:!! !|||:!!!:! ||||||:!! !!|||:!: !!! ! !! ! rTyrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheVal 304616 : CTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTT : 304672 176 : GlnValLeuGlyGlyPheValValHisGlyIleAlaValGlyAlaCysThrTyrAlaA : 195 !!. !:!! !!|||!:!|||:!!:!!..!|||.!!!.!||||||||| !! |||| HisCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaA 304673 : CATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCG : 304732 196 : laValPheAlaValHisAlaCysGlyGlnValLysIleLeuLeuSerTrpLeuGluHi : 214 ||:!!||||||..!|||||||||||||||:!! ! |||:!!:!!||| ! |||! ! laLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAs 304733 : CTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGA : 304789 215 : sLeuThrGlyGlyArgThrAspMetSerGluSerValAspAspArgIleAlaSerIle : 233 !|||..!..!.!!!:! ! |||.....!:!!||| ! |||:!! !..!||| pLeuValAsnSerLysGlu------SerSerAspLeuAspLysArgLeuIleGluIle 304790 : TCTTGTCAACAGCAAAGAA------TCATCTGATTTAGATAAACGATTAATAGAAATT : 304840 234 : ValSerGlnHisValArgIleLeu{Ly} >>>> Target Intron 2 >>>> { : 242 |||..!!!.|||:!!|||||||||{!:} 70 bp { ValGluHisHisLeuArgIleLeu{Ar}++ ++{ 304841 : GTTGAGCATCATTTGCGAATTTTA{AG}gt.........................ag{ : 304939 243 : s}PheLeuSerAlaAlaGluGluAlaLeuGlnGlnValSerPheValGluPheIleGl : 261 !}|||! !:!! !!.!:!! !!.!||||||:!!|||!!!|||:!!||||||||||| g}PheSerAlaIleValGlnThrValLeuGlnGluValCysPheLeuGluPheIleGl 304940 : A}TTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTTCTTGGAATTCATTGG : 304994 262 : yCysThrLeuAsnLeuCysPheLeuGlyTyrTyrIleLeuMet >>>> Target I : 276 |! !|||||| :!!|||.!.|||! !|||||| !:!!! ! 62 ySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysIleThr++ 304995 : TTCTACCTTACTGATATGTCTACTTGAATACTACTGTATAACGgt............. : 305041 277 : ntron 3 >>>> GluTrpAspIleHisAspIleThrThrValValSerTyrGlyVa : 290 bp !!:|||!!:! ! !:!!! !..!!:!:!!..!!!!||| !|| ++AspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrVa 305042 : ............agGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGT : 305143 291 : lIleLeuIleSerIleGlyPheAsnLeuPheIlePheCysTyrIleGlyGluLeuIle : 309 |:!!|||||||||:!! !||||||:!!||||||!!.|||||||||||||||:!!:!! lLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeu 305144 : GTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTT : 305200 310 : AlaGluGln >>>> Target Intron 4 >>>> CysSerArgValGlyGluVa : 319 !|||:!! 413 bp !!|||!!!|||||| ! MetGluLys++ ++SerSerSerValGlyLeuSe 305201 : ATGGAAAAGgt.........................agAGCAGTAGCGTTGGATTATC : 305643 320 : lAlaTyrMetIleAspTrpTyrAsnLeuGlnGlyLysLysLysGlnCysLeuIleMet : 338 !..!!:!||||||..!||||||:!!|||! ! !|||! !! !!!. !!||||||:!: rCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleLeu 305644 : CTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTTTA : 305700 339 : IleIleAlaMetSerAsnSerSerSerLysPheThrAlaGlyGlyMetValGluLeuS : 358 |||||||||||||||!:!!:! !!:!!|||.!!!:!|||||| !:!:|||!!:|||| IleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysValValAspLeuS 305701 : ATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTAT : 305760 359 : erLeuSerThrPheGlyAspVal : 365 |||||||||||||||||:!!||| erLeuSerThrPheGlyAsnVal 305761 : CTTTATCCACATTTGGAAACGTG : 305783 vulgar: Lalb_14633 30 365 . KQ414889.1 303304 305783 + 574 M 64 192 5 0 2 I 0 934 3 0 2 M 49 147 G 1 0 M 76 228 G 2 0 M 19 57 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 37 111 5 0 2 I 0 409 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303305 305783 574 + . gene_id 6 ; sequence Lalb_14633 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303305 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303305 303496 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304868 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 2 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303305 305783 574 + . alignment_id 6 ; Query Lalb_14633 ; Align 303305 31 192 ; Align 304435 95 147 ; Align 304582 145 228 ; Align 304810 223 57 ; Align 304940 243 99 ; Align 305101 276 111 ; Align 305625 313 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 501 Query range: 33 -> 365 Target range: 256775 -> 258624 34 : LeuValIlePheIleProPheGlyLeuPheGlyIlePheGluValGluGlyAlaTyrA : 53 ||| !!! !!!.||||||! ! !||| !! !.!!.!!!!:! !!!:.!! !||| LeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrM 256776 : TTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAca : 256833 54 : snLysLeuLysLeuPheGlyProThrSerTyrPheLeuMetValTyrMetLysTyrPh : 72 |||:::||| |||||||||! !|||:!!!:::!!!!: !! ! !!.||| etLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrTh 256834 : tgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACAC : 256890 73 : eAsnLeuIleAsnLysIleSerHisPheArgThrCysValGluGlnIleGluSerAsp : 91 |||:!: :!! !!.! !!.!.||| !|||||||||!!.||||||!!!||| rLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAsp 256891 : GTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGAT : 256947 92 : TrpLysAsnMetSerTyrSerGluAspArgAspIleMetValGluSerAlaIleSerG : 111 |||!:!! :!!!!! ..!:!!|||!:!.!.:!:|||:!!:!!!:!|||! !! !| TrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheG 256948 : TGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCG : 257007 112 : lyArgArgLeuValLysIleCysCysPheLeuSerTyrIleGlyPheValPheTyrTy : 130 ||||| !:!!!.!! !.!!|||... !:!!! ! ! ! !||| ::::: lyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePh 257008 : GTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttctt : 257064 131 : rValAlaIleProIleThrThrGlyArgValThrAspProIleHisAsnLeuSerPhe : 149 :|||:!! !!:!:!.!|||! !! !:!! !! !! !.!.!.. !! ! ! eValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleVal 257065 : cgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTG : 257121 150 : ValProThrSerPheProValAlaGlnIleValAlaAspIleArgTyrSerProValA : 169 ! ! ! !! !! !!||| !:!!! :!! !:!!:!! ! ! ||||||..!| ArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrA 257122 : CGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGA : 257181 170 : snGluIlePheLeuAlaGlyGlnValLeuGlyGlyPheValValHisGlyIleAlaVa : 188 |||||||| ! :!! ! !|||..!! !..!..!.!!:!!!.! ! !! !.!!|| snGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrVa 257182 : ACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGT : 257238 189 : lGlyAlaCysThrTyrAlaAlaValPheAlaValHisAlaCysGlyGlnValLysIle : 207 |.!! !! !!:! !|||||||||||||||..!||||||! !||||||:!!! :!: lSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrVal 257239 : TAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTG : 257295 208 : LeuLeuSerTrpLeu<->GluHisLeuThrGlyGlyArgThrAspMetSerGluSerV : 226 |||:!!||||||:!! ||| !:!!!.!! !..!|||!.! ... LeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrPheP 257296 : CTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttc : 257355 227 : alAspAspArgIleAlaSerIleValSerGlnHisValArgIleLeu{Ly} >>>> : 242 ! ! !:!|||!.! !||||||..!!!.|||:!!|||:!:|||{!.} roPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Se}++ 257356 : ctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt..... : 257407 243 : Target Intron 1 >>>> {s}PheLeuSerAlaAlaGluGluAlaLeuGlnGln : 253 76 bp {.}|||:!!||| ! !||||||!.!:!!.!.!:! ++{r}PheIleSerTyrIleGluGluValMetAsnArg 257408 : ....................ag{T}TTCATATCATATATCGAGGAAGTGATGAACCGA : 257512 254 : ValSerPheValGluPheIleGlyCysThrLeuAsnLeuCysPheLeuGlyTyrTyrI : 273 :!!!!!|||:!!|||!!..!! !!||||||||| !:!!|||.!.||||||||||||| IleCysPheLeuGluLeuPheArgCysThrLeuAlaIleCysMetLeuGlyTyrTyrI 257513 : ATATGTTTTTTAGAGTTGTTTAGATGCACGCTGGCTATATGCATGCTGGGATACTACA : 257572 274 : leLeuMet >>>> Target Intron 2 >>>> GluTrpAspIleHisAspIle : 282 ||||| ! 684 bp ||||||..!! !..|||||| leLeuAla++ ++GluTrpSerThrGlnAspIle 257573 : TTCTTGCGgt.........................aggaATGGTCTACGCaagatatt : 258283 283 : ThrThrValValSerTyrGlyValIleLeuIleSerIleGlyPheAsnLeuPheIleP : 302 ...::: |||||| !:!!||||||||||||:::...||||||:::|||:::. GlnAsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValI 258284 : caaaatttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaa : 258343 303 : heCysTyrIleGlyGluLeuIleAlaGluGln >>>> Target Intron 3 >>> : 313 ..|||||||||||||||:!!:!!.!!|||||| 90 bp leCysTyrIleGlyGluIleLeuThrGluGln++ 258344 : tatgttACATAGGTGAAATATTAACAGAACAGgt........................ : 258378 314 : > CysSerArgValGlyGluValAlaTyrMetIleAspTrpTyrAsnLeuGlnGlyL : 331 |||!.!!:!||||||!!:|||!.!||||||! !||||||||| !!|||! ! !| ++CysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspL 258379 : .agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACA : 258520 332 : ysLysLysGlnCysLeuIleMetIleIleAlaMetSerAsnSerSerSerLysPheTh : 350 ||!:!! !! !||||||:!!:!!|||||| |||!:! ! ! !:!!.!!|| ysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleTh 258521 : AAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCAC : 258577 351 : rAlaGlyGlyMetValGluLeuSerLeuSerThrPheGlyAspVal : 365 ||||||| ... ...::!|||:!!! !||||||.!!|||||| rAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAspVal 258578 : CGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATGTG : 258624 vulgar: Lalb_14633 33 365 . KQ414889.1 256775 258624 + 501 M 179 537 G 0 3 M 29 87 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256776 258624 501 + . gene_id 7 ; sequence Lalb_14633 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256776 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256776 257404 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256776 258624 501 + . alignment_id 7 ; Query Lalb_14633 ; Align 256776 34 537 ; Align 257316 213 87 ; Align 257482 243 99 ; Align 258265 276 111 ; Align 258466 313 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 485 Query range: 33 -> 380 Target range: 259895 -> 262201 34 : LeuValIlePheIleProPheGlyLeuPheGlyIlePheGluValGluGlyAlaTyrA : 53 ||||||! !.!.||||||! !! !||| ! !:!!.!!||| !|||.!! !|||! LeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrM 259896 : CTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACA : 259953 54 : snLysLeuLysLeuPheGlyProThrSerTyrPheLeuMetValTyrMetLysTyrPh : 72 ||| !|||:!!.!!|||||| !!!!:!!!::!!!:!:! !! !!!:!!.||| etLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrTh 259954 : TGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACAC : 260010 73 : eAsnLeuIleAsnLysIleSerHisPheArgThrCysValGluGlnIleGluSerAsp : 91 !..|||:!: !:! !!!! !!.!.! !!:!|||||||||!!.:!:|||!:!||| rThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAsp 260011 : AACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGAT : 260067 92 : TrpLysAsnMetSerTyrSerGluAspArgAspIleMetValGluSerAlaIleSerG : 111 |||!:!! !!!:!!! ..!:!!|||!:!:!!:!:|||:!!..!! !|||! !! !| TrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheG 260068 : TGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCG : 260127 112 : lyArgArgLeuValLysIleCysCysPheLeuSerTyrIleGlyPheValPheTyrTy : 130 ||||| !:!!!.! !|||... !!!! ! ! !||| !!:!!! !!:!! lyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCy 260128 : GCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTG : 260184 131 : rValAlaIleProIleThrThrGlyArgValThrAspProIleHisAsnLeuSerPhe : 149 !:!!!.!! !:!:!:!|||! ! !:!! !! !! !.!.!.. !! ! !! sLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal 260185 : TTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTT : 260241 150 : ValProThrSerPheProValAlaGlnIleValAlaAspIleArgTyrSerProValA : 169 !! ! ! !!! ! !!||| !:!! :!! !:!!:!:!.! !!||||||:!!| HisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetA 260242 : CATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGA : 260301 170 : snGluIlePheLeuAlaGlyGlnValLeuGlyGlyPheValValHisGlyIleAlaVa : 188 |||||||| !!|||!.!! !||| !!:!!..!||||||:!!|||:!!..!! !.!!|| snGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrVa 260302 : ACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGT : 260358 189 : lGlyAlaCysThrTyrAlaAlaValPheAlaValHisAlaCysGlyGlnValLysIle : 207 |||| !! !!:! !|||||||||.!..!!!.!|||||||||||||||:!!!!.:!: lGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnVal 260359 : TGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTG : 260415 208 : LeuLeuSerTrpLeu<->GluHisLeuThrGlyGlyArgThrAspMetSerGluSerV : 226 |||:!!..!|||:!! ||| !:!! !! !..!|||!.! ! !!.!:!!:!! LeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaP 260416 : CTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTC : 260475 227 : alAspAspArgIleAlaSerIleValSerGlnHisValArgIleLeu{Ly} >>>> : 242 ! ! ! ..!|||!.! !||||||..!!!.|||:!!||| !|||{! } roPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeu{Th}++ 260476 : CTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC{AC}gt..... : 260527 243 : Target Intron 1 >>>> {s}PheLeuSerAlaAlaGluGluAlaLeuGlnGln : 253 257 bp { }|||:!!||| ! !|||!!:!.!:!!.!.!:! ++{r}PheIleSerArgIleGluAspValMetAsnArg 260528 : ....................ag{C}TTCATATCGCGTATCGAGGATGTGATGAACCGG : 260813 254 : ValSerPheValGluPheIleGlyCysThrLeuAsnLeuCysPheLeuGlyTyrTyrI : 273 :!!!!!|||:!!|||!!..!! !!|||||||||:!!:!!|||.!.||||||||||||| IleCysPheLeuGluLeuPheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrI 260814 : ATATGCTTCCTGGAGTTGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATA : 260873 274 : leLeuMet >>>> Target Intron 2 >>>> GluTrpAspIleHisAspIle : 282 |||||||| 852 bp ||||||! ! !!.|||||| leLeuMet++ ++GluTrpAlaGluGlnAspIle 260874 : TTCTTATGgt.........................agGAATGGGCTGAGCAAGATATA : 261752 283 : ThrThrValValSerTyrGlyValIleLeuIleSerIleGlyPheAsnLeuPheIleP : 302 !!.!:!! !!!!||| !:!!!!:||||||:!!||| !!||||||:!!||||||. GlnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheIleI 261753 : CAAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAA : 261812 303 : heCysTyrIleGlyGluLeuIleAlaGluGln >>>> Target Intron 3 >>> : 313 !!|||||||||||||||:!!:!!.!!|||||| 81 bp leCysTyrIleGlyGluIleLeuThrGluGln++ 261813 : TCTGTTACATCGGTGAAATACTAACGGAACAGgt........................ : 261847 314 : > CysSerArgValGlyGluValAlaTyrMetIleAspTrpTyrAsnLeuGlnGlyL : 331 ||||||!:!||||||!!:|||!.!||||||! !:!!|||||| !!|||! ! !| ++CysSerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuProAspL 261848 : .agTGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACCTGATA : 261980 332 : ysLysLysGlnCysLeuIleMetIleIleAlaMetSerAsnSerSerSerLysPhe-T : 350 ||!..! ! !||||||:!!||||||||| !.! !!.!!!:! !!|||#! ysSerIleLeuAspLeuIleLeuIleIleAlaArgLysProProGlyAsn***Phe#A 261981 : AAAGTATCCTTGATTTGATTTTGATCATTGCACGAAAACCGCCGGGAAATTAGTTCAA : 262038 351 : hrAlaGlyGlyMetValGluLeu{S} >>>> Target Intron 4 >>>> {er : 358 .!!.!||| ! |||..!! !{|} 71 bp {|| snValGlyLeuHisValArgArg{S}++ +-{er 262039 : ATGTCGGTTTACACGTTCGGCGA{T}gt.........................ac{CA : 262134 359 : }LeuSerThrPheGlyAspValValLysThrAlaIleAlaTyrMetAsnMetLeuLeu : 377 } ! !! !.!. !.!.|||||||||||||||.!!||||||:!!|||:!!|||! ! }SerProLeuIlePheGlnValValLysThrAlaPheAlaTyrLeuAsnLeuLeuArg 262135 : }AGTCCGTTGATATTCCAGGTGGTTAAAACTGCTTTCGCGTATCTGAATCTGTTGCGT : 262190 378 : AlaLeuThr : 380 !:!!||| GlnMetThr 262191 : CAAATGACG : 262201 vulgar: Lalb_14633 33 380 . KQ414889.1 259895 262201 + 485 M 179 537 G 0 3 M 29 87 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 37 111 F 0 1 M 8 24 S 0 1 5 0 2 I 0 67 3 0 2 S 1 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259896 262201 485 + . gene_id 8 ; sequence Lalb_14633 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259896 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259896 260524 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262062 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262062 . + . insertions 0 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local splice5 262063 262064 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 262063 262133 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 262132 262133 . + . intron_id 3 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 262134 262201 . + . KQ414889.1 exonerate:protein2genome:local exon 262134 262201 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259896 262201 485 + . alignment_id 8 ; Query Lalb_14633 ; Align 259896 34 537 ; Align 260436 213 87 ; Align 260783 243 99 ; Align 261734 276 111 ; Align 261926 313 111 ; Align 262038 350 24 ; Align 262136 359 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 376 Query range: 239 -> 380 Target range: 279903 -> 280551 240 : IleLeuLysPheLeuSerAlaAlaGluGluAlaLeuGlnGlnValSerPheValGluP : 259 |||!!!!..|||:!!||| ! !|||! ! !|||.!.:!!:!!!!!||||||||| IlePheSerPheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluV 279904 : ATTTTCAGTTTTATATCGCAAATCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGG : 279961 260 : heIleGlyCysThrLeuAsnLeuCysPheLeuGlyTyrTyrIleLeuMet >>>> T : 276 ! ||||||||||||||||||:!!||||||||| !||||||:!!|||! ! alIleGlyCysThrLeuAsnIleCysPheLeuThrTyrTyrLeuLeuThr++ 279962 : TGATTGGTTGCACGTTGAACATATGCTTTTTGACATATTATTTACTCACGgt...... : 280014 277 : arget Intron 1 >>>> GluTrpAspIleHisAspIleThrThrValValSerT : 288 80 bp ||||||!!: !:!!||| !! ! !..! !!!!!| ++GluTrpGluGlnAsnAspAlaIleGlyThrPheThrT 280015 : ...................agGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGT : 280128 289 : yrGlyValIleLeuIleSerIleGlyPheAsnLeuPheIlePheCysTyrIleGlyGl : 307 || !:!!.!!|||||||||:!! !||||||:!!||||||.!!|||||||||||||| yrLeuMetPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGl 280129 : ATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGA : 280185 308 : uLeuIleAlaGluGln >>>> Target Intron 2 >>>> CysSerArgValG : 317 |:!!:!!:!!|||||| 74 bp |||! !!:!|||| uIleLeuSerGluGln++ ++CysLeuLysValG 280186 : AATTCTCTCCGAACaggt.........................agTGCTTAAAAGTCG : 280289 318 : lyGluValAlaTyrMetIleAspTrpTyrAsnLeuGlnGlyLysLysLysGlnCysLe : 336 ||! ! !.!!||||||||||||||||||..!|||! !||||||||| !||| !!|| lyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLe 280290 : GCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTT : 280346 337 : uIleMetIleIleAlaMetSerAsnSerSerSerLysPheThrAlaGlyGlyMetVal : 355 ||||:!!|||.!!|||:!!||||||||||||! !|||!!.||||||||| !!!::!! uIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIle 280347 : GATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATC : 280403 356 : GluLeuSerLeuSerThrPheGlyAsp >>>> Target Intron 3 >>>> Va : 365 !!:||||||||||||!:!||| !!..! 71 bp || AspLeuSerLeuSerSerPheCysSer++ ++Va 280404 : GATCTCTCTTTAAGCAGCTTCTGCAGCgt.........................agGT : 280504 366 : lValLysThrAlaIleAlaTyrMetAsnMetLeuLeuAlaLeuThr : 380 |:!!|||||||||.!!||||||:!!!:!:!:|||! !.!!|||||| lLeuLysThrAlaPheAlaTyrLeuSerLeuLeuArgThrLeuThr 280505 : GTTAAAAACGGCATTCGCATATCTGAGCTTATTACGTACGCTTACC : 280551 vulgar: Lalb_14633 239 380 . KQ414889.1 279903 280551 + 376 M 36 108 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 279904 280551 376 + . gene_id 9 ; sequence Lalb_14633 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 279904 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279904 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280551 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 279904 280551 376 + . alignment_id 9 ; Query Lalb_14633 ; Align 279904 240 108 ; Align 280092 276 111 ; Align 280277 313 156 ; Align 280504 365 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 355 Query range: 33 -> 312 Target range: 262972 -> 264648 34 : LeuValIlePheIleProPheGlyLeuPheGlyIlePheGluValGluGlyAlaTyrA : 53 ||| !! ! !!||||||! ! !||| ! !:!!.!.|||!.!|||..! !:!!! LeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsnPheHisM 262973 : CTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAATTTCCATA : 263030 54 : snLysLeuLysLeuPheGlyProThrSerTyrPheLeuMetValTyrMetLysTyrPh : 72 ||||||:!!:!!.!!|||||| !.!! ! !::!!!:!:! ! !!:!!.||| etLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleAsnTyrTh 263031 : TGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCAATTACAC : 263087 73 : eAsnLeuIleAsnLysIleSerHisPheArgThrCysValGluGlnIleGluSerAsp : 91 ! |||:!: ! ! ! !!.! !!.!.!:! !||||||:!!!!.:!::!!..!||| rTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGlnGluAsp 263088 : CTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCAGGAAGAC : 263144 92 : TrpLysAsnMetSerTyrSerGluAspArgAspIleMetValGluSerAlaIleSerG : 111 ||| ! !:!!!!! ! !||||||!:! !||||||:!!:!!!:!|||! !! !| TrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAlaLysTyrG 263145 : TGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCGAAATACG : 263204 112 : lyArgArgLeuValLysIleCysCysPheLeuSerTyrIleGlyPheValPheTyrTy : 130 ||||| !:!!!.! !|||....!!!!!! ! ! ! .!!.!!:!!! ! ! ! lyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetCysLysCy 263205 : GCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGTGCAAGTG : 263261 131 : rValAlaIleProIleThrThrGlyArgValThrAspProIleHisAsnLeuSerPhe : 149 !:!!!.!! ! !!.!!|||||| ! !:!! !||| !! !.!.!.! !! !.!. sLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrArgIleLeu 263262 : CCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAGAATTCTA : 263318 150 : ValProThrSerPheProValAlaGlnIleValAlaAspIleArgTyrSerProValA : 169 ! ! ! !!! !|||||| !:!! :!! ! :!! ! !:!|||..!| ArgMetLeuProCysProValTyrLysGluIleIleProValAspThrAsnProThrA 263319 : CGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAATCCGACGA : 263378 170 : snGluIlePheLeuAlaGlyGlnValLeuGlyGlyPheValValHisGlyIleAlaVa : 188 ||||||||||||||||| !||| !!|||..!||||||:!!||| !!.!! !.!!|| snGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaThrThrVa 263379 : ACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGACAACTGT : 263435 189 : lGlyAlaCysThrTyrAlaAlaValPheAlaValHisAlaCysGlyGlnValLysIle : 207 |||||||! ! ! .!!||||||||||||! !|||||||||||||||:!!!!.:!: lGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLeuAsnVal 263436 : CGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTTGAACGTG : 263492 208 : LeuLeuSerTrpLeu<->GluHisLeuThrGlyGlyArgThrAspMetSerGluSerV : 226 |||:!!||||||:!! ||| !:!!!.! !..!||| !!!:! !.!.!. ! LeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLysAsnLeuT 263493 : TTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAGAATCTTT : 263552 227 : alAspAspArgIleAlaSerIleValSerGlnHisValArgIleLeu{Ly} >>>> : 242 ! ! !..!|||!.! !||||||..!!!.|||:!!|||:!!|||{!.} yrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeu{Se}++ 263553 : ATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTG{AG}gt..... : 263604 243 : Target Intron 1 >>>> {s}PheLeuSerAlaAlaGluGluAlaLeuGlnGln : 253 72 bp {.}|||:!!..! ! !:!!.!.!.!:!!... ! ++{r}PheIleAspArgIleLysAsnValMetSerThr 263605 : ....................ag{T}TTCATAGATCGTATTAAGAATGTGATGAGTACG : 263705 254 : ValSerPheValGluPheIleGlyCysThrLeuAsnLeuCysPheLeu{G} >>>> : 270 :!!!!!|||||||||!!..!! !..!||||||:!!:!!|||.!.|||{!} IleCysPheValGluLeuPheLysAlaThrLeuAspIleCysMetLeu{A}++ 263706 : ATATGTTTCGTGGAGTTATTCAAGGCTACGCTGGATATATGCATGCTA{G}gt..... : 263759 271 : Target Intron 2 >>>> {ly}TyrTyrIleLeuMetGluTrpAspIleHisAs : 281 764 bp {.!} ! !!:!!!!!..!||||||!!:! !||||| +-{la}IleAspValPheGlnGluTrpGluSerHisAs 263760 : ....................aa{CA}ATTGACGTTTTTCAGGAATGGGAAAGTCAtga : 264553 282 : pIleThrThrValValSerTyrGlyValIleLeuIleSerIleGlyPheAsnLeuPhe : 300 |||| ...:::..!!!!||| !:!!||||||||||||!!: !! !|||:!!||| pIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerMetCysGlyAsnIlePhe 264554 : tattcaaaatttgacTACATATTTCATGATACTGATATCAATGTGCGGCAACATTTTT : 264610 301 : IlePheCysTyrIleGlyGluLeuIleAlaGluGln : 312 :!!.!.|||||||||||||||:!!:!:.!!|||||| LeuMetCysTyrIleGlyGluIleLeuThrGluGln 264611 : CTAATGTGTTATATCGGCGAGATATTGACTGAGcag : 264648 vulgar: Lalb_14633 33 312 . KQ414889.1 262972 264648 + 355 M 179 537 G 0 3 M 29 87 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 27 81 S 0 1 5 0 2 I 0 760 3 0 2 S 1 2 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262973 264648 355 + . gene_id 10 ; sequence Lalb_14633 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262973 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262973 263601 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 263673 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263672 263673 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 263674 263756 . + . KQ414889.1 exonerate:protein2genome:local exon 263674 263756 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263757 263758 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263757 264520 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264519 264520 . + . intron_id 1 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 264521 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264521 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262973 264648 355 + . alignment_id 10 ; Query Lalb_14633 ; Align 262973 34 537 ; Align 263513 213 87 ; Align 263675 243 81 ; Align 264523 271 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 342 Query range: 239 -> 375 Target range: 286690 -> 287252 240 : IleLeuLysPheLeuSerAlaAlaGluGluAlaLeuGlnGlnValSerPheValGluP : 259 |||!!!!..|||:!!||| ! !|||! ! !|||.!.:!!:!!!!!||||||||| IlePheSerPheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluV 286691 : ATTTTCAGTTTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGG : 286748 260 : heIleGlyCysThrLeuAsnLeuCysPheLeuGlyTyrTyrIleLeuMet >>>> T : 276 ! ||||||||||||||||||:!!||||||||||||||||||:!!|||! ! alIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeuThr++ 286749 : TGATTGGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTACTGACGgt...... : 286801 277 : arget Intron 1 >>>> GluTrpAspIleHisAspIleThrThrValValSerT : 288 80 bp ||||||!!: ! !!!:! !! ! !..!:!!!!!| ++GluTrpGluGlnSerGluThrIleGlyThrIleThrT 286802 : ...................agGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGT : 286915 289 : yrGlyValIleLeuIleSerIleGlyPheAsnLeuPheIlePheCysTyrIleGlyGl : 307 || !!..!:!:|||:!!|||.!! !||||||:!!||||||.!!|||||||||||||| yrCysThrLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGl 286916 : ATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGA : 286972 308 : uLeuIleAlaGluGln >>>> Target Intron 2 >>>> CysSerArgValG : 317 |:!!:!!:!!|||||| 74 bp |||! !!:!|||| uIleLeuSerGluGln++ ++CysLeuLysValG 286973 : AATTCTCTCCGAACaggt.........................agtGCTTAAAAGTCG : 287076 318 : lyGluValAlaTyrMetIleAspTrpTyrAsnLeuGlnGlyLysLysLysGlnCysLe : 336 || ! !.!!||||||||||||||||||..!|||! !||||||! ! ||| !!|| lyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLe 287077 : GCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTT : 287133 337 : uIleMetIleIleAlaMetSerAsnSerSerSerLysPheThrAlaGlyGlyMetVal : 355 ||||:!!|||.!!|||:!!||||||||||||! !|||!!.||||||||| !!!::!! uIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIle 287134 : GATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATC : 287190 356 : GluLeuSerLeuSerThrPheGlyAspValValLysThrAlaIleAlaTyrMetAsnM : 375 !!:||||||||||||!:!||| !!..!||| !! ! ! !:!!:!!||| :!!: AspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisL 287191 : GATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATT : 287250 376 : et : 375 !! eu 287251 : TG : 287252 vulgar: Lalb_14633 239 375 . KQ414889.1 286690 287252 + 342 M 36 108 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286691 287252 342 + . gene_id 11 ; sequence Lalb_14633 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286691 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286691 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286691 287252 342 + . alignment_id 11 ; Query Lalb_14633 ; Align 286691 240 108 ; Align 286879 276 111 ; Align 287064 313 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 335 Query range: 48 -> 274 Target range: 274551 -> 275306 49 : GluGlyAlaTyrAsnLysLeuLysLeuPheGlyProThrSerTyrPheLeuMetValT : 68 |||.!! !:!! ||||||||||||.!!|||||| !.!!:!!!::!!!!!:! ! GluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyG 274552 : GAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAG : 274609 69 : yrMetLysTyrPheAsnLeuIleAsnLysIleSerHisPheArgThrCysValGluGl : 87 !!:!!.||| !!..|||:!: :::! !!.!.!..!.||| !|||||||||!! lyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHi 274610 : GAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCA : 274666 88 : nIleGluSerAspTrpLysAsnMetSerTyrSerGluAspArgAspIleMetValGlu : 106 .!!::!!!!!||||||!:!! !:!!!!! !!||||||!:!.!.:!:|||:!!:!! sMetGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLys 274667 : CATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAG : 274723 107 : SerAlaIleSerGlyArgArgLeuValLysIleCysCysPheLeuSerTyrIleGlyP : 126 !:!|||! ! !|||||| !:!!!.!! .!!|||... !!!! ! ! !||| AsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyV 274724 : AACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTG : 274783 127 : heValPheTyrTyrValAlaIleProIleThrThrGlyArgValThrAspProIleHi : 145 !!:!!! !|||! !||| !! ! !!.!!|||! ! !! !||| !! !! !.! alLeuCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGl 274784 : TTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGA : 274840 146 : sAsnLeuSerPheValProThrSerPheProValAlaGlnIleValAlaAspIleArg : 164 .!.! !!!! ! ! ! ! !!! ! !!.! !:!!! :!!!.!! :!: ! uThrArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAsp 274841 : GACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGAC : 274897 165 : TyrSerProValAsnGluIlePheLeuAlaGlyGlnValLeuGlyGlyPheValValH : 184 ||||||..!||||||||| !!||||||..!||| !!:!!..!||||||:!!|||: ThrSerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValA 274898 : ACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGA : 274957 185 : isGlyIleAlaValGlyAlaCysThrTyrAlaAlaValPheAlaValHisAlaCysGl : 203 !!..!! !||||||||||||! !!:! !|||||||||||||||!.!||||||! !|| snSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGl 274958 : ATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGG : 275014 204 : yGlnValLysIleLeuLeuSerTrpLeuGluHisLeuThrGlyGlyArgThrAspMet : 222 ||||:!!!..:!:|||:!!! !|||:!! .!.!!!..!..! ! !! !|||... yGlnLeuSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGln 275015 : CCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcag : 275071 223 : SerGluSerVal<->AspAspArgIleAlaSerIleValSerGlnHisValArgIleL : 241 :::::::::||| ..!..!|||!.! !:!!|||..!!!.|||:!!|||:!!| AsnLysAsnValTyrPheSerGluIleGlyValValValGluHisHisLeuArgValL 275072 : aataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTAC : 275131 242 : eu{Ly} >>>> Target Intron 1 >>>> {s}PheLeuSerAlaAlaGluGl : 249 ||{!.} 74 bp {.}|||:!!:!! ! !|||!! eu{Se}++ ++{r}PheIleAlaArgIleGluAs 275132 : TC{AG}gt.........................ag{T}TTCATAGCACGTATCGAGGA : 275229 250 : uAlaLeuGlnGlnValSerPheValGluPheIleGlyCysThrLeuAsnLeuCysPhe : 268 :!.!:!!.!.!:!:!!!!!|||:!!|||!!..!! !|||||||||:!!:!!|||.!. pValMetAsnArgIleCysPheMetGluLeuPheLysCysThrLeuAspMetCysMet 275230 : TGTGATGAATCGAATATGCTTCATGGAATTGTTCAAGTGTACTCTGGATATGTGCATG : 275286 269 : LeuGlyTyrTyrIleLeu : 274 |||||||||||||||||| LeuGlyTyrTyrIleLeu 275287 : CTTGGCTATTACATTCTC : 275306 vulgar: Lalb_14633 48 274 . KQ414889.1 274551 275306 + 335 M 178 534 G 0 3 M 15 45 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274552 275306 335 + . gene_id 12 ; sequence Lalb_14633 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274552 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274552 275135 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274552 275306 335 + . alignment_id 12 ; Query Lalb_14633 ; Align 274552 49 534 ; Align 275089 227 45 ; Align 275211 243 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 306 Query range: 36 -> 245 Target range: 232591 -> 233218 37 : PheIleProPheGlyLeuPheGlyIlePheGluValGluGlyAlaTyrAsnLysLeuL : 56 .!!:!!|||! ! !|||||| !:!:||||||! ! !.!! ! ! .!.!:!:!!| IleValProCysIleLeuPheIleLeuPheGluAspThrSerLeuGluGluArgMetL 232592 : ATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGA : 232649 57 : ysLeuPheGlyProThrSerTyrPheLeuMetValTyrMetLysTyrPheAsnLeuIl : 75 ||! !.!!||||||! !|||:!!|||||||||! ! ! :!!!!.|||! ! !|||:! ysSerIleGlyProMetSerHisPheLeuMetGlyGluLeuAsnTyrCysCysLeuLe 232650 : AGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTT : 232706 76 : eAsnLysIleSerHisPheArgThrCysValGluGlnIleGluSerAspTrpLysAsn : 94 : ||| !:! !!.!!! ! !||||||||||||:!::!!..!||||||::!||| uAlaLysAlaAsnAspIleLeuTyrCysValGluGlnValLysGlnAspTrpArgAsn 232707 : GGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAAC : 232763 95 : MetSerTyrSerGluAspArgAspIleMetValGluSerAlaIleSerGlyArgArgL : 114 :!:!.! ! !!! !!||||||:!:|||:!!:!!!:!|||! ! !|||||| !: ValLysLysProValHisArgAspLeuMetLeuLysAsnAlaLysLeuGlyArgSerI 232764 : GTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGA : 232823 115 : euValLysIleCysCysPheLeuSerTyrIleGlyPheValPheTyrTyrValAlaIl : 133 !!!.! |||..!...|||! !! !:!!! !||| !!! !! ! !! ! :!!!.!! leAlaCysIleAlaAlaPheCysMetHisThrGlyValGlySerAspGluIleValTh 232824 : TAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCGGCTCCGACGAAATAGTCAC : 232880 134 : eProIleThrThrGlyArgValThrAspProIleHisAsnLeuSerPheValProThr : 152 ! !:!! !! !.!!! ! !! !! !! !.!.!:!! !|||.!. !||| ! rGlyLeuArgMetSerThrPheTyrValGlyAsnGluSerTyrSerMetTyrProLeu 232881 : AGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTA : 232937 153 : SerPheProValAlaGlnIleValAlaAspIleArgTyrSerProValAsnGluIleP : 172 !!! ! !! !! ! !! :!! !|||! !|||!:!||||||..!|||||||||. ProCysThrPheTyrThrLysLeuMetAspThrArgPheSerProThrAsnGluIleM 232938 : CCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTCAGTCCGACGAACGAGATAA : 232997 173 : heLeuAlaGlyGlnValLeuGlyGlyPheValValHisGlyIleAlaValGlyAlaCy : 191 !.!!!!.! !||| !|||..!||||||:!!|||:!!..!:!!.!!||||||||||| etPheValLeuGlnCysLeuSerGlyPheIleValAsnSerValThrValGlyAlaCy 232998 : TGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTG : 233054 192 : sThrTyrAlaAlaValPheAlaValHisAlaCysGlyGlnValLysIleLeuLeuSer : 210 | !! !.!||||||.!.|||:!!|||||||||||||||:!!!!.:!::!!:!!||| sGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGlnLeuAsnValValMetSer 233055 : CGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCG : 233111 211 : TrpLeuGluHisLeuThrGlyGlyArgThrAspMetSerGluSerValAspAspArgI : 230 |||!!: !!|||..!! !!.!!:! !.!. !..!..! !!.!.!. !:!: LysLeuAspAspLeuValAspAlaLysGlyGlnGluGluArgValAlaGlnArgLysL 233112 : AAATTGGACGATTTGGTGGACGCGAAAGGGCAGGAGGAGAGAGTCGCGCAGAGGAAGT : 233171 231 : leAlaSerIleValSerGlnHisValArgIleLeuLysPheLeuSer : 245 !!!.!! !||||||..!!!.|||:!!|||! !|||!:!!:!|||||| euGlyPheIleValGluHisHisLeuArgThrLeuArgTyrLeuSer 233172 : TAGGTTTCATCGTGGAGCATCATTTGCGTACATTAAGGTATTTGTCT : 233218 vulgar: Lalb_14633 36 245 . KQ414889.1 232591 233218 + 306 M 209 627 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232592 233218 306 + . gene_id 13 ; sequence Lalb_14633 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232592 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232592 233218 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232592 233218 306 + . alignment_id 13 ; Query Lalb_14633 ; Align 232592 37 627 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 278 Query range: 33 -> 242 Target range: 266760 -> 267390 34 : LeuValIlePheIleProPheGlyLeuPheGlyIlePheGluValGluGlyAlaTyrA : 53 ||| !!! ! ! ||||||! ! !!!! ! !:!!.!.|||! !|||.!! ! !! LeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgT 266761 : CTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTA : 266818 54 : snLysLeuLysLeuPheGlyProThrSerTyrPheLeuMetValTyrMetLysTyrPh : 72 ..|||:!!|||:!!||||||||| !|||:!!!::!!!:!:! ! !!:!!.||| hrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrTh 266819 : CGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACAC : 266875 73 : eAsnLeuIleAsnLysIleSerHisPheArgThrCysValGluGlnIleGluSerAsp : 91 !!..|||:!: :::! !!.!.!..!.||| !|||||||||!!.!!::!!!!!||| rThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAsp 266876 : CACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGAT : 266932 92 : TrpLysAsnMetSerTyrSerGluAspArgAspIleMetValGluSerAlaIleSerG : 111 |||!:!! !:!!!!! !!||||||!:!.!.:!:|||:!!:!!!:!|||! ! !| TrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleG 266933 : TGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCG : 266992 112 : lyArgArgLeuValLysIleCysCysPheLeuSerTyrIleGlyPheValPheTyrTy : 130 ||||| !:!!!.!! !.!!|||... !!!! ! ! !||| !!:!! !|||! lyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCy 266993 : GTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTG : 267049 131 : rValAlaIleProIleThrThrGlyArgValThrAspProIleHisAsnLeuSerPhe : 149 !||| !! !!.!!|||! ! !! !||| !! ! !! !.!.!.! !! ! ! sValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleVal 267050 : TGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTA : 267106 150 : ValProThrSerPheProValAlaGlnIleValAlaAspIleArgTyrSerProValA : 169 !! ! ! !!! ! !!||| !:!!! :!! !! :!! ! !||||||..!| HisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrA 267107 : CATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGA : 267166 170 : snGluIlePheLeuAlaGlyGlnValLeuGlyGlyPheValValHisGlyIleAlaVa : 188 |||||||| !!|||!.!..!||| !!:!!..!||||||:!!|||:!!..!! !!.!|| snGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValVa 267167 : ACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGT : 267223 189 : lGlyAlaCysThrTyrAlaAlaValPheAlaValHisAlaCysGlyGlnValLysIle : 207 |||||||! !!:! !|||||||||||||||!.!|||||||||||||||:!!!..:!: lGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerVal 267224 : CGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTG : 267280 208 : LeuLeuSerTrpLeuGluHisLeuThrGlyGlyArgThrAspMetSerGluSerVal< : 227 |||:!!! !|||:!!:!!.!.!!!..!..! !! !! !|||! !:!:!!!:!||| LeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValC 267281 : CTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTT : 267340 228 : ->AspAspArgIleAlaSerIleValSerGlnHisValArgIleLeuLys : 242 !|||!:!|||!.! !:!!|||..!!!.|||:!!|||:!!|||!:! ysPheAspLysIleGlyValValValGluHisHisLeuArgValLeuArg 267341 : GCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGAGG : 267390 vulgar: Lalb_14633 33 242 . KQ414889.1 266760 267390 + 278 M 193 579 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266761 267390 278 + . gene_id 14 ; sequence Lalb_14633 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266761 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266761 267390 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266761 267390 278 + . alignment_id 14 ; Query Lalb_14633 ; Align 266761 34 579 ; Align 267343 227 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 261 Query range: 35 -> 242 Target range: 289867 -> 290482 36 : IlePheIleProPheGlyLeuPheGlyIlePheGluValGluGlyAlaTyrAsnLysL : 55 |||.!.:!!||||||.!!! ! !! !:!!|||...! !.!.! ! ! !!!.. : IleIleValProPheSerHisHisValLeuPheSerAspAsnAspMetAsnThrPheV 289868 : ATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCG : 289925 56 : euLysLeuPheGlyProThrSerTyrPheLeuMetValTyrMetLysTyrPheAsnLe : 74 !!||| !.!!|||||| !!!!!:!! !|||! ..!!:!.!.||||||! ! !!!! alLysAsnLeuGlyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPh 289926 : TTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTT : 289982 75 : uIleAsnLysIleSerHisPheArgThrCysValGluGlnIleGluSerAspTrpLys : 93 !! !! ||| !||| .!! !! !||||||:!!!!.||||||!!!||||||||| eSerMetLysGlySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLys 289983 : CAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAG : 290039 94 : AsnMetSerTyrSerGluAspArgAspIleMetValGluSerAlaIleSerGlyArgA : 113 ! :!! !! !!..!!!: !!|||! !||||||:!!..!! !!.!! ! !.!!|||! MetLeuArgAspGluAspHisArgValIleMetLeuArgTyrValThrMetSerArgA 290040 : ATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGA : 290099 114 : rgLeuValLysIleCysCysPheLeuSerTyrIleGlyPheValPheTyrTyrValAl : 132 .!|||:!!|||:!:|||....!!!!!! !||||||||| !:!!! !||| !!..!!. snLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrVa 290100 : ATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGT : 290156 133 : aIleProIleThrThrGlyArgValThrAspProIleHisAsnLeuSerPheValPro : 151 !||||||:!: !:!! !!:! !..!:!! !|||:!!!!!.!! !||| lIleProLeuPheSerLysLysSerValAsn------GlyAsnValThrIleArgPro 290157 : CATACCGTTGTTCTCGAAGAAGAGCGTGAAC------GGTAACGTGACTATCAGACCT : 290207 152 : ThrSerPheProValAlaGlnIleValAlaAspIleArgTyrSerProValAsnGluI : 171 !!!!!:!|||! ! !:!! !! !|||:!!!:! ! ||||||!.! !!|||| LeuThrTyrProGlyTyrGluGluPhePheAspValGlnLysSerProAlaTyrGluI 290208 : CTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGA : 290267 172 : lePheLeuAlaGlyGlnValLeuGlyGlyPheValValHisGlyIleAlaValGlyAl : 190 || !!!!!..! !!!. !:!! !! !.!.:!!..! ..!|||.!!:!!!.!|| leValPheCysMetHisCysValTyrValMetIleThrAlaAsnIleThrMetAlaAl 290268 : TCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGC : 290324 191 : aCysThrTyrAlaAlaValPheAlaValHisAlaCysGlyGlnValLysIleLeuLeu : 209 |! !!:!! .!!.!!:!!||||||..!|||.!!|||||||||:!!||||||! ! ! aTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThr 290325 : GTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACG : 290381 210 : SerTrpLeuGluHisLeuThrGlyGlyArgThrAspMetSerGluSerValAspAspA : 229 !!! !!|||||| !!|||||| ! !! !!! ! :!!..!:!!.!!|||..!|||| ThrArgLeuGluAspLeuThrLysArgGlyMetLeuLeuGluLysGlyValSerAspA 290382 : ACGCGGCTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATC : 290441 230 : rgIleAlaSerIleValSerGlnHisValArgIleLeuLys : 242 ||:!:||| !:!!|||||| ||||||..!||||||||| rgLeuAlaValValValSerGlyHisValGluIleLeuLys 290442 : GTTTGGCGGTTGTTGTGAGCGGTCACGTGGAGATCTTGAAG : 290482 vulgar: Lalb_14633 35 242 . KQ414889.1 289867 290482 + 261 M 107 321 G 2 0 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289868 290482 261 + . gene_id 15 ; sequence Lalb_14633 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289868 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289868 290482 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289868 290482 261 + . alignment_id 15 ; Query Lalb_14633 ; Align 289868 36 321 ; Align 290189 145 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 239 Query range: 275 -> 380 Target range: 272836 -> 273302 276 : GluTrpAspIleHisAspIleThrThrValValSerTyrGlyValIleLeuIleSerI : 295 |||||| ! !||||||.!! !!:!:!!..!!!!||| !:!!||||||||||||! GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 296 : leGlyPheAsnLeuPheIlePheCysTyrIleGlyGluLeuIleAlaGluGln >>> : 313 !: ||||||:::|||||| |||||||||||||||:!!:!!.!!|||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 314 : > Target Intron 1 >>>> CysSerArgValGlyGluValAlaTyrMetIleA : 324 70 bp |||...::::::|||||||||!.!||||||! : ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 325 : spTrpTyrAsnLeuGlnGlyLysLysLysGlnCysLeuIleMetIleIleAlaMetSe : 343 !!|||||| !!|||! |||||| ! ! ! !||||||:!!||||||:!!! !! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 344 : rAsnSerSerSerLysPheThrAlaGlyGlyMetValGluLeuSerLeuSerThrPhe : 362 !!:! ! !! !|||.!!||||||||| !!!!:||| :!!|||:!!! !|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 363 : GlyAsp >>>> Target Intron 2 >>>> ValValLysThrAlaIleAlaTy : 372 |||||| 81 bp |||:!!|||!:!|||.!!||||| GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 373 : rMetAsnMetLeuLeuAlaLeuThr : 380 |:!:|||||||||! ! ! !||| rLeuAsnMetLeuArgGlnThrThr 273277 : CTTAAATATGCTACGACAAACGACA : 273302 vulgar: Lalb_14633 275 380 . KQ414889.1 272836 273302 + 239 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273302 239 + . gene_id 16 ; sequence Lalb_14633 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273302 239 + . alignment_id 16 ; Query Lalb_14633 ; Align 272837 276 111 ; Align 273018 313 156 ; Align 273255 365 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 234 Query range: 262 -> 380 Target range: 301647 -> 302163 263 : ThrLeuAsnLeuCysPheLeuGlyTyrTyrIleLeuMetGluTrpAspIleHisAspI : 282 ||||||||| ! |||||| !! ! !!!! !||||||.!.! ! !|||! ThrLeuAsnAlaLysPheLeuArgValIle***Phe***GluTrpGlnAsnSerAspT 301648 : ACTTTAAATGCAAAGTTTTTACGAGTAATTTGATTTTAGGAATGGCAAAATAGCGACA : 301705 283 : leThrThrValValSerTyrGlyValIleLeuIleSerIleGlyPheAsnLeuPheIl : 301 ! !.!!:!!:!!!!!!:! !..!:!:|||! |||.!! !||||||:!!||||| hrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAsnIlePheIl 301706 : CGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATATTCAT : 301762 302 : ePheCysTyrIleGlyGluLeuIleAlaGluGln >>>> Target Intron 1 > : 313 |||||||||||||||||||:!!:!!:!!|||||| 80 bp ePheCysTyrIleGlyGluIleLeuSerGluGln++ 301763 : ATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt...................... : 301800 314 : >>> CysSerArgValGlyGluValAlaTyrMetIleAspTrpTyrAsnLeuGlnGl : 330 ||||||!:!:!!|||..!!.!:!!||| !||||||||||||||||||! !!. ++CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAl 301801 : ...agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGC : 301929 331 : yLysLysLysGlnCysLeuIleMetIleIleAlaMetSerAsnSerSerSerLysPhe : 349 !|||!:! ! ! !||||||:!::!!! !!.!!!:|||.!.! ! !! !!|||.!! aLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeu 301930 : GAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTT : 301986 350 : ThrAlaGlyGlyMetValGluLeuSerLeuSerThrPheGlyAsp >>>> Target : 365 ||||||||| !!!::!!!!:|||||||||!:!||||||.!!..! 8 ThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSer++ 301987 : ACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTgt........... : 302036 366 : Intron 2 >>>> ValValLysThrAlaIleAlaTyrMetAsnMetLeuLeuAla : 378 2 bp ||||||||||||:!!:!:!.!|||:!!|||:!:|||! !.!! ++ValValLysThrSerValValTyrLeuAsnLeuLeuArgThr 302037 : ..............agGTGGTGAAAACATCGGTGGTGTACTTGAATTTACTGCGAACA : 302155 379 : LeuThr : 380 :!!||| ValThr 302156 : GTTACA : 302163 vulgar: Lalb_14633 262 380 . KQ414889.1 301647 302163 + 234 M 50 150 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301648 302163 234 + . gene_id 17 ; sequence Lalb_14633 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301648 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301648 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302163 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302163 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301648 302163 234 + . alignment_id 17 ; Query Lalb_14633 ; Align 301648 263 150 ; Align 301878 313 156 ; Align 302116 365 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 231 Query range: 149 -> 242 Target range: 202682 -> 203155 150 : ValProThrSerPheProValAlaGlnIleValAlaAspIleArgTyrSerProValA : 169 :!! !..!!!!||| !! !!:!! !.!!:!! !|||:!!|||||||||||||||| LeuSerValThrPheSerPheSerGlyPheIleIleAspValArgTyrSerProValA 202683 : CTTAGTGTGACGTTCTCCTTCTCAGGATTTATCATTGATGTTAGATACAGTCCTGTGA : 202740 170 : snGluIlePheLeuAlaGlyGlnValLeuGlyGlyPheValValHisGlyIleAlaVa : 188 |||||||||||!!!:!! !!:!:!!:!!!.!! !.!!:!!:!!||||||:!!.!!|| snGluIlePhePheSerIleArgIleValAlaValIleLeuIleHisGlyValThrVa 202741 : ACGAGATCTTCTTCTCGATTCGAATCGTAGCTGTCATCCTAATTCACGGTGTCACTGT : 202797 189 : lGlyAlaCysThrTyrAlaAlaValPheAlaValHisAlaCysGlyGlnValLysIle : 207 |||||||||| !! .!!|||:!!||||||||||||! !|||||||||:!! ! :!! lGlyAlaCysCysLeuThrAlaLeuPheAlaValHisAspCysGlyGlnMetAspVal 202798 : AGGAGCTTGTTGCTTGACAGCGTTGTTTGCGGTTCACGATTGCGGCCAGATGGACGTT : 202854 208 : LeuLeuSerTrpLeuGluHisLeuThrGlyGlyArgThrAspMetSerGlu >>>> : 225 |||:!!:!!|||||||||||||||! !! !||||||:!!|||||||||:!! LeuMetAlaTrpLeuGluHisLeuMetAspGlyArgSerAspMetSerLys-+ 202855 : TTGATGGCCTGGCTGGAACATTTGATGGATGGTCGTTCGGATATGAGTAAAat..... : 202910 226 : Target Intron 1 >>>> SerValAspAspArgIleAlaSerIleValSerGln : 236 194 bp !:!|||:!!! !|||!!:!.!!!!|||||||||||| +-AsnValAsnGlyArgMetValThrIleValSerGln 202911 : ....................aaAATGTGAATGGCAGAATGGTGACCATCGTGAGCCAA : 203135 237 : HisValArgIleLeuLys : 242 |||:!!|||||||||||| HisIleArgIleLeuLys 203136 : CACATACGGATACTGAAA : 203155 vulgar: Lalb_14633 149 242 . KQ414889.1 202682 203155 + 231 M 75 225 5 0 2 I 0 190 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202683 203155 231 + . gene_id 18 ; sequence Lalb_14633 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 202683 202907 . + . KQ414889.1 exonerate:protein2genome:local exon 202683 202907 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 202908 202909 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 202908 203101 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 203100 203101 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 203102 203155 . + . KQ414889.1 exonerate:protein2genome:local exon 203102 203155 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202683 203155 231 + . alignment_id 18 ; Query Lalb_14633 ; Align 202683 150 225 ; Align 203102 225 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 231 Query range: 33 -> 275 Target range: 236969 -> 237766 34 : LeuValIlePheIleProPheGlyLeuPheGlyIlePheGluValGluGlyAlaTyrA : 53 ||| !! .!.||||||! !..!||| ! !!!:.!.||| !! ! ! !|||! LeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrT 236970 : CTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACA : 237027 54 : snLysLeuLysLeuPheGlyProThrSerTyrPheLeuMetValTyrMetLysTyrPh : 72 ..|||:!!|||:!!.!!||| !! !|||:!!!:::!!.!. ! !!!:!..||| hrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrTh 237028 : CGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACAC : 237084 73 : eAsnLeuIleAsnLysIleSerHisPheArgThrCysValGluGlnIleGluSerAsp : 91 !! |||:!: ::! !!.! !.!.||| !! ! !!.!.!!.!!:|||!!!||| rMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAsp 237085 : CATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGAT : 237141 92 : TrpLysAsnMetSerTyrSerGluAspArgAspIleMetValGluSerAlaIleSerG : 111 |||!:!!..! !::: ...||| :::::::::|||:!!:!!! !|||! !! !. TrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheS 237142 : TGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTA : 237201 112 : lyArgArgLeuValLysIleCysCysPheLeuSerTyrIleGlyPheValPheTyrTy : 130 !!||| ! !!.!! !||| .!!!!!! !:!! !|||.!.:!! |||! erArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCy 237202 : GTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTG : 237258 131 : rValAlaIleProIleThrThrGlyArgValThrAspProIleHisAsnLeuSerPhe : 149 !||| !! ! !! !|||||| ! !|||..!! ! !! ! ! !.! !! !!!. sValMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLeu 237259 : TGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTG : 237315 150 : ValProThrSerPheProValAlaGlnIleValAlaAspIleArgTyrSerProValA : 169 ! ! ! !!!!.|||:!! !:!! :!! ! :!! ! !:! !!:!!| ArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetA 237316 : CGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGA : 237375 170 : snGluIlePheLeuAlaGlyGlnValLeuGlyGlyPheValValHisGlyIleAlaVa : 188 ||!!:||| !!:!! !..!||| !!|||..!||||||:!!!.!:!!..!! !|||:! snAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIl 237376 : ACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGAT : 237432 189 : lGlyAlaCysThrTyrAlaAlaValPheAlaValHisAlaCysGlyGlnValLys<-> : 207 !.!!!.! !:! !.!!::!!.!.!..!! !||||||! !||||||:!!!.. eSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerVal 237433 : CAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTG : 237489 208 : IleLeuLeuSerTrpLeuGluHisLeuThrGlyGlyArgThrAspMetSerGluSerV : 226 :!!:!!|||||| !!!: !:!!!:!! !!.!||| ! !!.!!!:..! ValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAspH 237490 : GTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATC : 237549 227 : alAspAspArgIleAlaSerIleValSerGlnHisValArgIleLeu{Ly} >>>> : 242 ! !|||..!||| !!!!!||||||..!:!!|||:!!|||:!:|||{!!} isPheAspGluIleProThrIleValGluGluHisLeuArgValLeu{As}++ 237550 : ATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTG{AA}gt..... : 237601 243 : Target Intron 1 >>>> {s}PheLeuSerAlaAlaGluGluAlaLeuGlnGln : 253 68 bp {.}|||:!!||| ! !|||! ! !:!!.!.:!! ++{n}PheIleSerArgIleGluAlaMetMetAsnLys 237602 : ....................ag{C}TTCATATCGCGCATAGAGGCAATGATGAACAAA : 237698 254 : ValSerPheValGluPheIleGlyCysThrLeuAsnLeuCysPheLeuGlyTyrTyrI : 273 !.!!!!|||:!!|||!!.!!: !!|||! !:!! !:!!||| ||||||||||||| AlaCysPheLeuGluLeuMetArgCysMetIleAlaValCysAlaLeuGlyTyrTyrI 237699 : GCGTGTTTCCTGGAGTTAATGAGGTGCATGATAGCTGTATGCGCACTTGGATATTATA : 237758 274 : leLeuMet : 275 ||!!!||| lePheMet 237759 : TATTCATG : 237766 vulgar: Lalb_14633 33 275 . KQ414889.1 236969 237766 + 231 M 173 519 G 0 3 M 35 105 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236970 237766 231 + . gene_id 19 ; sequence Lalb_14633 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 236970 237598 . + . KQ414889.1 exonerate:protein2genome:local exon 236970 237598 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 237599 237600 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 237599 237666 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 237665 237666 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 237667 237766 . + . KQ414889.1 exonerate:protein2genome:local exon 237667 237766 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 236970 237766 231 + . alignment_id 19 ; Query Lalb_14633 ; Align 236970 34 519 ; Align 237492 207 105 ; Align 237668 243 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 209 Query range: 298 -> 365 Target range: 224457 -> 224658 299 : LeuPheIlePheCysTyrIleGlyGluLeuIleAlaGluGlnCysSerArgValGlyG : 318 ||| !!:! !|||.!! !..!|||.!! ! ||||||...::::::|||: LeuHisHisTyrHisTyrPheLeuSerLeuPhePheProGlnCysGluLysIleGlyG 224458 : cttcacCACTACCACTATTTTTTATCGCTATTTTTTCCtcagtgtgaaaaaattggac : 224515 319 : luValAlaTyrMetIleAspTrpTyrAsnLeuGlnGlyLysLysLysGlnCysLeuIl : 337 :!|||:!!||||||||||||||||||...||| |||!!.||||||! !|||! !|| lnValSerTyrMetIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIl 224516 : aAGTGTCGTACATGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCAT : 224572 338 : eMetIleIleAlaMetSerAsnSerSerSerLysPheThrAlaGlyGlyMetValGlu : 356 |:!!||||||||||||||||||||||||! !|||!!.|||||||||..!||||||||| eLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGlu 224573 : TCTGATAATCGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAA : 224629 357 : LeuSerLeuSerThrPheGlyAspVal : 365 |||!!!|||!!!||||||||||||||| LeuCysLeuThrThrPheGlyAspVal 224630 : CTGTGTCTAACCACTTTCGGTGACGTA : 224658 vulgar: Lalb_14633 298 365 . KQ414889.1 224457 224658 + 209 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224458 224658 209 + . gene_id 20 ; sequence Lalb_14633 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224458 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224458 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224458 224658 209 + . alignment_id 20 ; Query Lalb_14633 ; Align 224458 299 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 30 -> 188 Target range: 294804 -> 295275 31 : LeuGluThrLeuValIlePheIleProPheGlyLeuPheGlyIlePheGluValGluG : 50 ||| ..!||| !!:!!!!.:!:|||! !|||! !||| !!:!!|||.!.|||:::. LeuThrValLeuPheValLeuValProCysGlyTyrPheCysValPheHisValLysA 294805 : TTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaa : 294862 51 : lyAlaTyrAsnLysLeuLysLeuPheGlyProThrSerTyrPheLeuMetValTyrMe : 69 ..... |||:!!||||||.!.||||||..! !|||! !:!!:!: ! :! snValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLe 294863 : acgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCT : 294919 70 : tLysTyrPheAsnLeuIleAsnLysIleSerHisPheArgThrCysValGluGlnIle : 88 :!:!||| ! !|||:!! |||! !! |||!:! !|||:!!|||.!.||| uArgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCysIleGluAspIle 294920 : CAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATA : 294976 89 : GluSerAspTrpLysAsnMetSerTyrSerGluAspArgAspIleMetValGluSerA : 108 |||!:!||||||||| !!:..! !! !!||| !!|||! ||||||:!!:!!!:!| GluAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIleMetIleLysAsnA 294977 : GAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACG : 295036 109 : laIleSerGlyArgArgLeuValLysIleCysCysPheLeuSerTyrIleGlyPheVa : 127 ||!!: ! !!:!|||:!!..! !! ! !.!!:!!! !|||! !..! || laMetValThrGlnArgMetThrValAlaPheThrIleIleIleTyrSerSerAlaVa 295037 : CGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGT : 295093 128 : lPheTyrTyrValAlaIleProIleThrThrGlyArgValThrAspProIleHisAsn : 146 |! |||:!!!.! !:::|||... :::... :!! !:!! !! :!!||| lSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGluAsnLysLysAsnAsn 295094 : GTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGAGAACAAGAAGAATAAT : 295150 147 : LeuSerPheValProThrSerPheProValAlaGlnIleValAlaAspIleArgTyrS : 166 !!!.!! ! !! ! !!.!!|||! ! !:!!:!! !!!.!||| ! !! !| ---ThrIleArgAlaLeuProIleProGlyTyrGluLeuPheValAspAlaTyrSerS 295151 : ---ACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCTTATTCCA : 295207 167 : erProValAsnGluIlePheLeuAlaGlyGlnValLeuGlyGlyPheValValHisGl : 185 |||||..! !!||||||.!. !.!! !! !!:!! !..!||| !!|||:!! erProThrTyrGluIleIleArgThrHisLeuPheValTyrSerPhePheValAsnLy 295208 : GTCCTACCTACGAGATCATAAGAACTCATCTCTTTGTTTACTCGTTCTTCGTCAACAA : 295264 186 : yIleAlaVal : 188 !! !!.!||| sThrGlyVal 295265 : AACTGGTGTC : 295275 vulgar: Lalb_14633 30 188 . KQ414889.1 294804 295275 + 180 M 116 348 G 1 0 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294805 295275 180 + . gene_id 21 ; sequence Lalb_14633 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294805 295275 . + . KQ414889.1 exonerate:protein2genome:local exon 294805 295275 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294805 295275 180 + . alignment_id 21 ; Query Lalb_14633 ; Align 294805 31 348 ; Align 295153 148 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 179 Query range: 275 -> 365 Target range: 206050 -> 206401 276 : GluTrpAspIleHisAspIleThrThrValValSerTyrGlyValIleLeuIleSerI : 295 ||||||!!:! !:!!:!!! !|||.!!|||:!! !||| !..!:!:! !|||||| GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 296 : leGlyPheAsnLeuPheIlePheCysTyrIleGlyGluLeuIleAlaGluGln >>> : 313 ! !||| !:!!||||||.!.||||||||||||:!!|||:!! !!!:||| ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 314 : > Target Intron 1 >>>> CysSerArgValGlyGluValAlaTyrMetIleA : 324 81 bp ! ! !|||||| !..!:!!! !! !:!:: ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 325 : spTrpTyrAsnLeuGlnGlyLysLysLysGlnCysLeuIleMetIleIleAlaMetSe : 343 !!||||||..!|||! !..!!:! ! !!::! !:!!|||:!!|||||||||||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 344 : rAsnSerSerSerLysPheThrAlaGlyGlyMetValGluLeuSerLeuSerThrPhe : 362 ||||! ! !!! !|||!!.||||||||| !||| !!|||:!!||||||:!!!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 363 : GlyAspVal : 365 !|||||| ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: Lalb_14633 275 365 . KQ414889.1 206050 206401 + 179 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 179 + . gene_id 22 ; sequence Lalb_14633 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 179 + . alignment_id 22 ; Query Lalb_14633 ; Align 206051 276 111 ; Align 206243 313 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 173 Query range: 311 -> 380 Target range: 244655 -> 244951 312 : GlnCysSerArgValGlyGluValAlaTyrMetIleAspTrpTyrAsnLeuGlnGlyL : 331 ||||||! !!:!||||||||||||!.!||||||! !||||||||| !!|||! ! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 332 : ysLysLysGlnCysLeuIleMetIleIleAlaMetSerAsnSerSerSerLysPheTh : 350 :!!:!! ! !||||||:!!|||||| ! ||||||! ! ! !:!!.!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 351 : rAlaGlyGlyMetValGluLeuSerLeuSerThrPheGlyAsp >>>> Target I : 365 ||||||| !:!::!!.!.:!!||||||! !|||||||||||| 89 rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAsp++ 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATgt............. : 244817 366 : ntron 1 >>>> ValValLysThrAlaIleAlaTyrMetAsnMetLeuLeuAlaLe : 379 bp ||||||||||||!.!.!!||||||:!!|||||||||! ! !:! ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMe 244818 : ............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAAAT : 244946 380 : uThr : 380 !:!! tSer 244947 : GTCC : 244951 vulgar: Lalb_14633 311 380 . KQ414889.1 244655 244951 + 173 M 53 159 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244951 173 + . gene_id 23 ; sequence Lalb_14633 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244656 244814 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244814 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244815 244816 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244815 244903 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244902 244903 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244904 244951 . + . KQ414889.1 exonerate:protein2genome:local exon 244904 244951 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244951 173 + . alignment_id 23 ; Query Lalb_14633 ; Align 244656 312 159 ; Align 244904 365 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 311 -> 371 Target range: 238625 -> 238805 312 : GlnCysSerArgValGlyGluValAlaTyrMetIleAspTrpTyrAsnLeuGlnGlyL : 331 ||||||! !!:!||||||||||||!.!||||||! !||||||||| !!|||! ! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 332 : ysLysLysGlnCysLeuIleMetIleIleAlaMetSerAsnSerSerSerLysPheTh : 350 :!!:!! ! !||||||:!!|||||| ! |||||| ! ! !||| !!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 351 : rAlaGlyGlyMetValGluLeuSerLeuSerThrPheGlyAspValValLysThrAla : 369 ||||||| !:!::!!.!.:!!||||||! !||||||||||||||| !:!!||| ! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 370 : IleAla : 371 :!!||| LeuAla 238798 : CTTGCT : 238805 vulgar: Lalb_14633 311 371 . KQ414889.1 238625 238805 + 145 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238805 145 + . gene_id 24 ; sequence Lalb_14633 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238805 145 + . alignment_id 24 ; Query Lalb_14633 ; Align 238626 312 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 309 -> 365 Target range: 234979 -> 235147 310 : AlaGluGlnCysSerArgValGlyGluValAlaTyrMetIleAspTrpTyrAsnLeuG : 329 .!!:!!||||||!!!!:!||||||||| !!.!||||||! !!!:||||||...|||! ThrGlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuP 234980 : ACTCAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTAC : 235037 330 : lnGlyLysLysLysGlnCysLeuIleMetIleIleAlaMetSerAsnSerSerSerLy : 348 !|||! ! !!|||:!!|||||||||:!!! !|||!:!! ! !! !|| roHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLy 235038 : CTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAA : 235094 349 : sPheThrAlaGlyGlyMetValGluLeuSerLeuSerThrPheGlyAspVal : 365 |.!!||||||||| !.!.:!!:!!:!!|||:!!:!!||||||||||||||| sIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235095 : AATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: Lalb_14633 309 365 . KQ414889.1 234979 235147 + 138 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234980 235147 138 + . gene_id 25 ; sequence Lalb_14633 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234980 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234980 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234980 235147 138 + . alignment_id 25 ; Query Lalb_14633 ; Align 234980 310 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 311 -> 368 Target range: 254271 -> 254442 312 : GlnCysSerArgValGlyGluValAlaTyrMetIleAspTrpTyrAsnLeuGlnGlyL : 331 ||||||! !!:!||||||||||||!.!||||||! !||||||||| !!|||! ! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 332 : ysLysLysGlnCysLeuIleMetIleIleAlaMetSerAsnSerSerSerLysPheTh : 350 :!!:!! ! !||||||:!!||||||.!! |||||| ! ! !:!!.!!|| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 351 : rAlaGlyGlyMetValGluLeuSerLeuSerThrPheGlyAspValValLysThr : 368 ||||||| ::: ...:::||||||! !||||||||||||||| !:!!||| rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThr 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 254442 vulgar: Lalb_14633 311 368 . KQ414889.1 254271 254442 + 137 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254442 137 + . gene_id 26 ; sequence Lalb_14633 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254442 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254442 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254442 137 + . alignment_id 26 ; Query Lalb_14633 ; Align 254272 312 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 310 -> 365 Target range: 277548 -> 277713 311 : GluGlnCysSerArgValGlyGluValAlaTyrMetIleAspTrpTyrAsnLeuGlnG : 330 ..!||||||!.!!:!||||||||||||!.!||||||! :!!|||||| !!|||! ! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 331 : lyLysLysLysGlnCysLeuIleMetIleIleAlaMetSerAsnSerSerSerLysPh : 349 !||| ! ! ! !|||:!!:!:||||||:!!! |||!:! |||.. spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 350 : eThrAlaGlyGlyMetValGluLeuSerLeuSerThrPheGlyAspVal : 365 .||||||||| ::::::::::::|||:!!! !||||||||||||||| eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspVal 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTA : 277713 vulgar: Lalb_14633 310 365 . KQ414889.1 277548 277713 + 133 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277713 133 + . gene_id 27 ; sequence Lalb_14633 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277549 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277713 133 + . alignment_id 27 ; Query Lalb_14633 ; Align 277549 311 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 238 -> 275 Target range: 224128 -> 224239 239 : ArgIleLeuLysPheLeuSerAlaAlaGluGluAlaLeuGlnGlnValSerPheValG : 258 !:! !! !!:!||||||!!! !.!!|||:!!||||||||||||||||||||||||| LysCysCysArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValG 224129 : AAATGTTGCAGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGG : 224186 259 : luPheIleGlyCysThrLeuAsnLeuCysPheLeuGlyTyrTyrIleLeuMet : 275 |||||:!!||||||! !||||||:!!|||.!!||||||||||||:!!:!!:!! luPheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleVal 224187 : AATTTCTAGGCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTG : 224239 vulgar: Lalb_14633 238 275 . KQ414889.1 224128 224239 + 131 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224129 224239 131 + . gene_id 28 ; sequence Lalb_14633 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224129 224239 . + . KQ414889.1 exonerate:protein2genome:local exon 224129 224239 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224129 224239 131 + . alignment_id 28 ; Query Lalb_14633 ; Align 224129 239 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 311 -> 365 Target range: 264723 -> 264885 312 : GlnCysSerArgValGlyGluValAlaTyrMetIleAspTrpTyrAsnLeuGlnGlyL : 331 ||||||!.!!:!||||||||||||!.!|||||| :!!|||||| !!|||! !| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 332 : ysLysLysGlnCysLeuIleMetIleIleAlaMetSerAsnSerSerSerLysPheTh : 350 || ! ! ! !||||||:!:|||||| !! |||!:! ! !! !|||||||| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 351 : rAlaGlyGlyMetValGluLeuSerLeuSerThrPheGlyAspVal : 365 ||||||| !!!::!!.!.:!!|||:!!! !||||||.!!|||||| rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: Lalb_14633 311 365 . KQ414889.1 264723 264885 + 126 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264885 126 + . gene_id 29 ; sequence Lalb_14633 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264885 126 + . alignment_id 29 ; Query Lalb_14633 ; Align 264724 312 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 273 -> 312 Target range: 224317 -> 224434 274 : LeuMetGluTrpAspIleHisAspIleThrThrValValSerTyrGlyValIleLeuI : 293 !!!...||||||... !!:!!|||!:!!.!|||!!!||| !:!!:!!|||! PheGlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuM 224318 : TTTCaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCA : 224375 294 : leSerIleGlyPheAsnLeuPheIlePheCysTyrIleGlyGluLeuIleAlaGluGl : 312 !:|||::: ||||||:::|||||||||||||||||||||||||||:!!|||||||| etSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl 224376 : TGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAca : 224432 313 : n : 312 | n 224433 : g : 224434 vulgar: Lalb_14633 273 312 . KQ414889.1 224317 224434 + 125 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224318 224434 125 + . gene_id 30 ; sequence Lalb_14633 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224318 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224318 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224318 224434 125 + . alignment_id 30 ; Query Lalb_14633 ; Align 224318 274 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 308 -> 374 Target range: 292380 -> 292578 309 : IleAlaGluGlnCysSerArgValGlyGluValAlaTyrMetIleAspTrpTyrAsnL : 328 :!: ! ! ||| !!|||..!:!!!.!.!.!.!:!!||| ! !!!:|||||||||| ValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnL 292381 : GTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATC : 292438 329 : euGlnGlyLysLysLysGlnCysLeuIleMetIleIleAlaMetSerAsnSerSerSe : 347 ||! ! !!::!||| !:: !:!!:!!:!!:!::!!|||!!:!!!!!. ! !!! euProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIl 292439 : TGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGAT : 292495 348 : rLysPheThrAlaGlyGlyMetValGluLeuSerLeuSerThrPheGlyAspValVal : 366 !|||.!!||||||||| !!!: !!! |||||||||!:!|||||||||! !||| ! eLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArg 292496 : CAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGT : 292552 367 : LysThrAlaIleAlaTyrMetAsn : 374 :!!:!! !:!!!.!! !!::!! GluSerLysLeuValLeuIleHis 292553 : GAATCAAAACTAGTCTTGATACAC : 292578 vulgar: Lalb_14633 308 374 . KQ414889.1 292380 292578 + 107 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292381 292578 107 + . gene_id 31 ; sequence Lalb_14633 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292381 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292381 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292381 292578 107 + . alignment_id 31 ; Query Lalb_14633 ; Align 292381 309 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 275 -> 312 Target range: 277371 -> 277482 276 : GluTrpAspIleHisAspIleThrThrValValSerTyrGlyValIleLeuIleSerI : 295 ||||||..! ! !|||:!! !|||:!!..!!!!:!! !:!!||||||||||||! GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 296 : leGlyPheAsnLeuPheIlePheCysTyrIleGlyGluLeuIleAlaGluGln : 312 !: ||||||:::||| ! ! |||||||||||||||:!!:!!.!!|||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAG : 277482 vulgar: Lalb_14633 275 312 . KQ414889.1 277371 277482 + 104 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277482 104 + . gene_id 32 ; sequence Lalb_14633 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277482 104 + . alignment_id 32 ; Query Lalb_14633 ; Align 277372 276 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14634 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 689 Query range: 0 -> 217 Target range: 194141 -> 194786 1 : GlnAsnIleHisHisLysSerAspPheValPheThrIleArgValProArgIleLeuL : 20 !::|||:!!:!!:!!|||! !||| !! !!:!.!!:!!|||||| !!!:! |||| ArgAsnValAsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuL 194142 : CGCAACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTC : 194199 21 : euMetLeuProGlyIleTrpProLeuHisArgGlyAspSerIleLeuGlyAspValLy : 39 ||! ! ! !|||||||||||| |||! !||||||:!!! !! ! |||:: euThrProIleGlyIleTrpPro------ArgGluAspSerLeuArgAspArgValAr 194200 : TAACACCGATCGGTATCTGGCCA------AGGGAGGATTCTCTTCGCGACAGAGTCCG : 194250 40 : sSerValIleGlnValGlyValMetPheLeuLeuMetCysTyrLeuLeuValProHis : 58 ! ! !! !|||..!||||||:!:||| !|||||||||!:!||||||||||||||| gLeuPheAlaGlnThrGlyValValPheAlaLeuMetCysPheLeuLeuValProHis 194251 : ACTGTTCGCTCAAACTGGCGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCTCAC : 194307 59 : ValIleTyrThrPheHisAspSerGluAspLeuThrArgTyrMetLysValIleAlaA : 78 ||||||||||||!:! !|||!!!|||||||||||||||||||||||||||||||||| ValIleTyrThrTyrPheAspCysGluAspLeuThrArgTyrMetLysValIleAlaA 194308 : GTGATCTACACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGG : 194367 79 : laGlnValPheSerLeuLeuGlyIleIleLysPheTrpValMetIlePheLysLysLy : 97 ||||||||||||||||||||!.!|||||||||||||||..!|||||| ! !!.!:!|| laGlnValPheSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnArgLy 194368 : CGCAAGTGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAA : 194424 98 : sArgPheArgAlaCysIleThrGluMetAspLeuGlnTyrAlaAsnValGluSerGlu : 116 |..!.!!||| !|||:!: !||||||!!: !|||||| !:!!||||||!!!||| sGluIleArgPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCysGlu 194425 : AGAGATCAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAG : 194481 117 : GluAspArgLeuValMetLysAsnSerAlaLysValAlaArgLeuPheThrThrIleT : 136 |||||||||! !||||||! !|||!!!||||||:!!!.!|||!!!|||||||||:!:| GluAspArgGlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuT 194482 : GAGGATCGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGT : 194541 137 : yrLeuGlyLeuCysPheGlyGlyAlaPheProTyrHisMetIleMetProPheLeuSe : 155 |||||||||||! !!:!|||||||||!!.|||||||||!!:|||:!:|||.!.:!!|| yrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSe 194542 : ACTTGGGACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTC : 194598 156 : rGluLysValPheLysThrAspAsnThrThrGlnIleProLeuProTyrLeuSerAsn : 174 ||||!:!:!! !!||| !||||||!:!|||||||||||||||||||||||||||||| rGluArgIleValLysGluAspAsnSerThrGlnIleProLeuProTyrLeuSerAsn 194599 : GGAGAGGATTGTCAAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGCAAC : 194655 175 : TyrIlePhePheValIleGluAspSerProMetTyrGluIleThrPheAlaValGlnI : 194 |||:!!||||||!.!|||||||||||||||!!:|||||||||||||||!.! !|||| TyrValPhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerGlnI 194656 : TATGTTTTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGA : 194715 195 : leAlaIleSerAsnMetIleLeuPheIleAsnCysGlyThrAsnSerLeuIleAlaSe : 213 || !||||||!:!!!:||||||! ! |||||||||! ! !!||||||:!!|||!! leLeuIleSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAlaTh 194716 : TACTGATTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTAC : 194772 214 : rMetThrMetHis : 217 !!!:! !|||||| rIleIleMetHis 194773 : TATTATTATGCAT : 194786 vulgar: Lalb_14634 0 217 . KQ414889.1 194141 194786 + 689 M 27 81 G 2 0 M 188 564 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194142 194786 689 + . gene_id 1 ; sequence Lalb_14634 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194142 194786 . + . KQ414889.1 exonerate:protein2genome:local exon 194142 194786 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 194142 194786 689 + . alignment_id 1 ; Query Lalb_14634 ; Align 194142 1 81 ; Align 194223 30 564 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14620 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 795 Query range: 18 -> 391 Target range: 289720 -> 292551 19 : GluAspAspIleAspTyrAlaLeuGluMetCysArgTrpValLeuLysProLeuGlyM : 38 ||| |||||| !|||.!!!!!|||:!:|||!.!|||:!!|||||||||:!!|||| GluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyM 289721 : GAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCA : 289778 39 : etTrpSerLeuValTyrAsnArgThrSerArgTrpGluArgThrValSerIleIleLe : 57 ||!:: !!!!!|||!:!!:!|||.!!|||||| ! |||||||||!.!|||:!::!:|| etTyrProPheValPheSerArgAlaSerArgArgGluArgThrAlaSerValLeuLe 289779 : TGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCT : 289835 58 : uLeuValThrCysPheLeuSerValIleLeuLeuIleValProLeuTyrTrpGluIle : 76 |:!!:!!..!|||! !! !! !:!! !!!:!!|||||||||!!! ! .!.:!! uIleLeuValCysCysSerIleLeuGlnPheIleIleValProPheSerHisHisVal 289836 : GATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTT : 289892 77 : IleLeuGlyAspIleGlyGlyLysAlaArgIleLysArgLeuGlyAlaThrCysAsnC : 96 :!!!!!.!!|||! !! ! !!!..!! !:!!|||!.!|||||| !! ! !| LeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuGlyProLeuThrPheC 289893 : CTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCT : 289952 97 : ysThrLeuSerAlaValLysTyrMetTyrLeuValLeuArgArgAlaThrPheAlaSe : 115 || ! !!!! ! !!|||||| |||!!! !:!!!:! !!:!!.!!.!!!.! ! ysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGlySerAlaIleGlyAr 289953 : GTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCG : 290009 116 : rCysIleGluTyrLeuGluAsnAspTrpArgThrValLysAsnGlnHisHisArgAla : 134 !|||:!::!!:!!:!!|||!..||||||!:!! !:!!::::!!:!! !!||||||!.! gCysValLysHisIleGluArgAspTrpLysMetLeuArgAspGluAspHisArgVal 290010 : TTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTT : 290066 135 : IleMetMetLysGlnAlaThrPheSerArgSerLeuValMetLeuCysIleIlePheI : 154 ||||||:!:!:! ! !.!|||.!.||||||!:!|||:!!! |||||| ||||||: IleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysLeuCysAlaIlePheL 290067 : ATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCT : 290126 155 : lePheCysGlyGlyIleSerPheHisValMetLeuProLeu<->SerArgArgArgVa : 172 !:!:! ||||||:!:|||!:!:!!..!:!::!!|||||| |||!:!!:!!!!|| euTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPheSerLysLysSerVa 290127 : TGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAAGAGCGT : 290183 173 : lValGlyAsnTyrThrLeuLysAlaLeuAlaTyrProGlyTyrAspArgPhePheAsp : 191 | !|||||| |||:!!!:! !!|||.!!||||||||||||!!:..!||||||||| lAsnGlyAsnValThrIleArgProLeuThrTyrProGlyTyrGluGluPhePheAsp 290184 : GAACGGTAACGTGACTATCAGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGAC : 290240 192 : IleGlnSerSerProThrTyrGluIleLeuTyrCysIleGlnCysPheGlyGlyPheV : 211 :!!|||!.!||||||.!!|||||||||:!!!:!|||!!:!!.||| !! !! !.!.: ValGlnLysSerProAlaTyrGluIleValPheCysMetHisCysValTyrValMetI 290241 : GTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGA : 290300 212 : alArgHisAsnValThrThrAlaThrPheAlaLeuAlaValPhePheValThrHisIl : 230 !!! ! |||:!!|||! !|||.!!!:!::!|||.!!..!.!!|||!.!||||||! leThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePheAlaThrHisTh 290301 : TCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATAC : 290357 231 : eCysGlyGlnValGlnIleGlnIleLeuLysLeuGluGluLeu<-><-><->AsnIle : 246 !|||||||||:!!:!!||||||! !::!||||||!!:||| ...!!: rCysGlyGlnIleLysIleGlnThrThrArgLeuGluAspLeuThrLysArgGlyMet 290358 : TTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTGACAAAGAGAGGGATG : 290414 247 : AspSerGluGluLysAsnCysAspMetValGlyGluIleIleGlnSerHisThrGluI : 266 ! !|||:!! ! !!||| :!!!.!! :!!:!:....!!|||..!|||| LeuLeuGluLysGlyValSerAspArgLeuAlaValValValSerGlyHisValGluI 290415 : CTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTGTGAGCGGTCACGTGGAGA : 290474 267 : leLeu{Ar} >>>> Target Intron 1 >>>> {g}TyrAlaLysIleIleAl : 274 |||||{!:} 655 bp {!}!:!.!!!:!!!:|||! leLeu{Ly}++ ++{s}PheThrArgMetIleGl 290475 : TCTTG{AA}gt.........................ag{A}TTCACGAGGATGATCGA : 291153 275 : aGluSerPheSerGluIleIlePheMetGluIleMetAlaSerThrPheLeuIleCys : 293 !...:!!!!. !||||||.!!!!.!!:|||:!!!!:!.!|||||| ! |||:!!||| uSerAlaLeuHisGluIlePheLeuIleGluValIleValSerThrValLeuLeuCys 291154 : AAGCGCGTTGCATGAAATATTCTTGATAGAAGTAATAGTATCCACTGTGTTACTATGC : 291210 294 : LeuValGluTyrCysLeuLeuThr >>>> Target Intron 2 >>>> GluTr : 303 |||:!!|||||| !|||:!!! ! 132 bp ||||| LeuIleGluTyrLeuLeuMetMet++ ++GluTr 291211 : TTGATCGAATATCTCTTAATGATGgt.........................agGAATG : 291372 304 : pIleAspSerAsnAlaIleAlaIleThrThrTyrAlaValTyrMetIleSerLeuThr : 322 | ..!|||:!!:!!|||!.!||| !||||||!.!..! !:!:! !|||!!!||| pGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerPheThr 291373 : GGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTTTCACT : 291429 323 : PheAsnAlaMetIlePheCysTyrIleGlyGlnIleLeuThrAspGln >>>> Tar : 339 |||||| !:!!||||||||||||:!!|||:!!:!!||| !! ||| PheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln++ 291430 : TTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAGgt........ : 291482 340 : get Intron 3 >>>> CysSerGlnIleGlyPheAlaSerTyrGlnValAsnTrp : 351 913 bp !!|||:!!|||!.! !|||||||||.!...!.!.||| ++GlySerGluIleAlaHisAlaSerTyrAspThrGluTrp 291483 : .................agGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGG : 292429 352 : TyrAsnLeuProProThrGlnAlaArgAsnPheValLeuLeuGlyThrIleSerLeuT : 371 |||||||||||| ! !:!!||||||:!!.!!||||||:!! !.!!|||!!! !: TyrAsnLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysH 292430 : TACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAAC : 292489 372 : yrProProLysLeuSerGlyGlyLysValThrGluLeuSerLeuAsnThrPheThrSe : 390 !!||| !||||||!!!!.!||||||:!! !! |||||||||||||||||| !:! isProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAl 292490 : ATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGC : 292546 391 : rVal : 391 !||| aVal 292547 : TGTA : 292551 vulgar: Lalb_14620 18 391 . KQ414889.1 289720 292551 + 795 M 149 447 G 0 3 M 77 231 G 0 9 M 23 69 S 0 2 5 0 2 I 0 651 3 0 2 S 1 1 M 33 99 5 0 2 I 0 128 3 0 2 M 37 111 5 0 2 I 0 909 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289721 292551 795 + . gene_id 1 ; sequence Lalb_14620 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 289721 290481 . + . KQ414889.1 exonerate:protein2genome:local exon 289721 290481 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 290482 290483 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 290482 291136 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 291135 291136 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 291137 291236 . + . KQ414889.1 exonerate:protein2genome:local exon 291137 291236 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291237 291238 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291237 291368 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 291367 291368 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292551 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289721 292551 795 + . alignment_id 1 ; Query Lalb_14620 ; Align 289721 19 447 ; Align 290171 168 231 ; Align 290411 245 69 ; Align 291138 269 99 ; Align 291369 302 111 ; Align 292393 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14620 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 728 Query range: 0 -> 392 Target range: 299620 -> 302039 1 : MetHisAspArgSerArgAspThrValValArgThrLeuLysLysTyrHisGluGluA : 20 |||:!!||||||||| !!..!!:!|||! ! !! !|||!:!!!.|||||| ! :!!: MetTyrAspArgSerCysSerSerValAspGlyGlnLeuArgAsnTyrHisTyrGlnA 299621 : ATGTACGATCGATCCTGTAGCAGTGTTGACGGCCAATTGAGGAATTACCATTACCAAA : 299678 21 : spAspIleAspTyrAlaLeuGluMetCysArgTrpValLeuLysProLeuGlyMetTr : 39 !!|||||| !!|||.!!|||:!!||||||!:!|||:!!|||||||||:!!|||:!:|| snAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTr 299679 : ATGACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATG : 299735 40 : pSerLeuValTyrAsnArgThrSerArgTrpGluArgThrValSerIleIleLeuLeu : 58 | !!|||:!! !!.!.|||:!!|||!:! !|||!.! !|||||||||:!!|||:!! pArgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMet 299736 : GCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATG : 299792 59 : ValThrCysPheLeuSerValIleLeuLeuIleValProLeuTyrTrpGluIleIleL : 78 ..!! !||||||! !|||:!!.!!!!!:!!:!!:!!|||! ! ! ! |||.!!! ThrIleCysPheSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePheP 299793 : ACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCT : 299852 79 : euGlyAspIleGlyGlyLysAlaArgIleLysArgLeuGlyAlaThrCysAsnCysTh : 97 !!!.!!!:! !.!! ! ! !.!!:!:!:||| !!!!||| !!..! !! !||| heAlaGluLysSerIleHisValLysValLysValPheGlyProValGlyPheCysLe 299853 : TCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCT : 299909 98 : rLeuSerAlaValLysTyrMetTyrLeuValLeuArgArgAlaThrPheAlaSerCys : 116 !! !||| !||||||||| |||||| !|||!.! !!!.!.!!|||! ! !!||| uSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCys 299910 : CTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGC : 299966 117 : IleGluTyrLeuGluAsnAsp--TrpArgThrValLysAsnGlnHisHisArgAlaIl : 135 |||:!!:!!:!!|||!..|||## ... !..!:!!||||||.!!|| IleGlnHisValGluArgAsp##---UnkUnkUnkUnkUnkSerAsnHisArgThrIl 299967 : ATCCAACACGTCGAGAGAGACNN---NNNNNNNNNNNNNNTTCGAATCATCGTACGAT : 300022 136 : eMetMetLysGlnAlaThrPheSerArgSerLeuValMetLeuCysIleIlePheIle : 154 ||||:!!!:! ! !.!|||.!.||||||!:!|||..!! :!!||| !:!:|||:!! eMetLeuArgTyrValThrMetSerArgAsnLeuThrThrValCysAlaValPheLeu 300023 : CATGTTGAGATACGTGACTATGAGCAGAAATCTGACGACCGTGTGCGCCGTGTTTCTT : 300079 155 : PheCysGlyGlyIleSerPheHisVal >>>> Target Intron 1 >>>> Me : 164 !:!...||||||!!:|||!:!|||..! 48 bp TyrAlaGlyGlyMetSerTyrHisThr++ -+Gl 300080 : TACGCAGGTGGTATGTCGTATCACACGgt.........................ggGA : 300157 165 : tLeuProLeuSerArgArgArgValValGlyAsnTyrThrLeuLysAlaLeuAlaTyr : 183 ! ! ! !!:! !! ! ! ! !! !|||||||||! !||| !!||||||||| uLysSerLysAsnTyrThrTyrLysArgGluAsnTyrThrTyrLysProLeuAlaTyr 300158 : GAAAAGCAAGAATTACACTTACAAAAGGGAGAATTACACTTACAAACCGTTAGCCTAT : 300214 184 : ProGlyTyrAspArgPhePheAspIleGlnSerSerProThrTyrGluIleLeuTyrC : 203 |||||||||||| !!|||.!!|||! !|||!!!||||||||||||||||||:::::: ProGlyTyrAspTrpPheIleAspThrGlnThrSerProThrTyrGluIleValPheP 300215 : CCTGGCTACGATTGGTTTATCGATACACAAACCAGTCCTACCTACGAgatcgtatttt : 300274 204 : ysIleGlnCysPheGlyGlyPheValArgHisAsnValThrThrAlaThrPheAlaLe : 222 ......||||||!.!!.!.!.:!!! !:!!|||||||||||||||.!!!:!::!|| hePheHisCysPheAlaAlaMetIleMetTyrAsnValThrThrAlaAlaTyrSerLe 300275 : tctttcactgttTCGCAGCGATGATCATGTACAACGTGACAACGGCAGCGTACAGTTT : 300331 223 : uAlaValPhePheValThrHisIleCysGlyGlnValGlnIleGlnIleLeuLysLeu : 241 ||||!.!.!.||||||||||||||||||||||||:!!|||||||||!!: !!:!||| uAlaAlaIlePheValThrHisIleCysGlyGlnIleGlnIleGlnMetAlaArgLeu 300332 : GGCGGCGATATTCGTCACTCATATCTGTGGACAGATTCAGATACAGATGGCGAGATTG : 300388 242 : GluGluLeuAsnIleAspSerGluGluLysAsn<-><->CysAspMetValGlyGluI : 259 |||!!:||| !!!! !||||||:!! !||| :!!! !! | GluAspLeuValGluArgThrGlyGluLysAspAspGlyProAspProLeuValValI 300389 : GAGGATCTGGTGGAGAGGACGGGAGAGAAGGACGACGGTCCTGATCCTTTGGTCGTTA : 300448 260 : leIleGlnSerHisThrGluIleLeu{Ar} >>>> Target Intron 2 >>>> : 268 ||:!!!:!..!|||..!:!!:!!|||{||} 1110 bp leValArgAspHisValLysValLeu{Ar}++ + 300449 : TCGTTCGAGATCACGTGAAGGTTTTA{AG}gt.........................a : 301585 269 : {g}TyrAlaLysIleIleAlaGluSerPheSerGluIleIlePheMetGluIleMet : 286 {|} !! !! !.!! ! !! !! !! !.!.:!! ! ::: ... +{g}AspProCysSerPheArg***ProThrPheHisLeuCysAlaValIleLysPhe 301586 : g{A}GACCCGTGTTCCTTCCGTTAGCCAACTTTTCATCTCTGCgctgtaattaaattt : 301639 287 : AlaSerThrPheLeuIleCysLeuValGluTyrCysLeuLeuThrGluTrpIleAspS : 306 ||||||!!. ! ! !!!:!!..! !! !!!! !|||||| !:!!| GluSerThrLeuAsnAlaLysPheLeuArgValIle***Phe***GluTrpGlnAsnS 301640 : gaatctACTTTAAATGCAAAGTTTTTACGAGTAATTTGATTTTAGGAATGGCAAAATA : 301699 307 : erAsnAlaIleAlaIleThrThrTyrAlaValTyrMetIleSerLeuThrPheAsnAl : 325 ||:!!.!!||||||!!: !|||!:! !..! :!:! |||!!!||||||||| erAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAsnIl 301700 : GCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATAT : 301756 326 : aMetIlePheCysTyrIleGlyGlnIleLeuThrAspGln >>>> Target Intr : 339 !.!.||||||||||||||||||:!!||||||:!!!!:||| 80 bp ePheIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301757 : ATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt................ : 301800 340 : on 3 >>>> CysSerGlnIleGlyPheAlaSerTyrGlnValAsnTrpTyrAsnLe : 354 |||||||||||||||! |||||||||:!!:!!:!!||||||||||| ++CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLe 301801 : .........agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTT : 301923 355 : uProProThrGlnAlaArgAsnPheValLeuLeuGlyThrIleSerLeuTyrProPro : 373 |||| !!! !::!||| !:!!.!!:!!||||||.!!..!||||||! !||||||||| uProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProPro 301924 : ACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCG : 301980 374 : LysLeuSerGlyGlyLysValThrGluLeuSerLeuAsnThrPheThrSerValAsn : 392 ||||||!!!!.!||||||:!!! !!!:||||||||||||||||||!:!||||||||| LysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerValAsn 301981 : AAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTAAAT : 302039 vulgar: Lalb_14620 0 392 . KQ414889.1 299620 302039 + 728 M 123 369 F 0 2 G 1 0 M 39 117 5 0 2 I 0 44 3 0 2 M 89 267 G 0 6 M 15 45 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 70 210 5 0 2 I 0 76 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299621 302039 728 + . gene_id 2 ; sequence Lalb_14620 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 299621 300108 . + . KQ414889.1 exonerate:protein2genome:local exon 299621 300108 . + . insertions 0 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local splice5 300109 300110 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300109 300156 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300155 300156 . + . intron_id 0 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 300157 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300157 300476 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302039 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302039 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299621 302039 728 + . alignment_id 2 ; Query Lalb_14620 ; Align 299621 1 369 ; Align 299992 125 117 ; Align 300157 164 267 ; Align 300430 253 45 ; Align 301588 269 210 ; Align 301878 339 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14620 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 412 Query range: 18 -> 392 Target range: 226915 -> 230409 19 : GluAspAspIleAspTyrAlaLeuGluMetCysArgTrpValLeuLysProLeuGlyM : 38 :!!!!: !!:!::!! ::!:!!:!!:!! !||||||:!!|||||||||||||||! GlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyI 226916 : CAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTA : 226973 39 : etTrpSerLeuValTyrAsnArgThrSerArgTrpGluArgThrValSerIleIleLe : 57 !:||| !! !! ..!!:!!:!|||||| ! !||| ! !!||| :!::! leTrpPro---SerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMe 226974 : TCTGGCCG---TCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGAT : 227027 58 : uLeuValThrCysPheLeuSerValIleLeuLeuIleValProLeuTyrTrpGluIle : 76 ! ! !! !|||!:! ! !:!!! !!!! !:!:||| !! ! !! ! ! :!: tGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrVal 227028 : GGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTG : 227084 77 : IleLeuGlyAspIleGlyGlyLysAlaArgIleLysArgLeuGlyAlaThrCysAsnC : 96 :!!|||! !! ! !|||!.! ! !! !:!:|||! !:!!||| !!! !! ! !! ValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPheP 227085 : GTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCT : 227144 97 : ysThrLeuSerAlaValLysTyrMetTyrLeuValLeuArgArgAlaThrPheAlaSe : 115 !.!!:!!||| !:!!|||||| |||..!!!!!.!..!! ! !.!! !.. heAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGl 227145 : TCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGA : 227201 116 : rCysIleGluTyrLeuGluAsnAspTrpArgThrValLysAsnGlnHisHisArgAla : 134 !|||:!!||| :!!:!! ||||||!:!!.!:!!!:! !!! !.!. !!||| ! uCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsn 227202 : GTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAAC : 227258 135 : IleMetMetLysGlnAlaThrPheSerArgSerLeuValMetLeuCysIleIlePheI : 154 :!:|||:!!! ! ! ||| !!:!.!!|||!.!|||:!!! :!!|||! .!!|||: ValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheV 227259 : GTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCG : 227318 155 : lePheCysGlyGlyIleSerPheHisValMetLeuProLeuSerArgArgArgValVa : 173 !!||| ... ::: |||::::!!:!::!!|||:!!!:! ! !!!!!|||!. alPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerValAl 227319 : TCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGC : 227375 174 : l<-><-><->GlyAsnTyrThrLeuLysAlaLeuAlaTyrProGlyTyrAspArgPhe : 189 ! ||||||:!!!:!! !! !:!! !!!:!||| ! ! ! !.!! aThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIleIle 227376 : AACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATC : 227432 190 : PheAspIleGlnSerSerProThrTyrGluIleLeuTyrCysIleGlnCysPheGlyG : 209 !|||:!!!::! !|||||| ! !!||||||!!!!:!! :!!|||! ! ! !| AlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValThrG 227433 : GCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAG : 227492 210 : lyPheValArgHisAsnValThrThrAlaThrPheAlaLeuAlaValPhePheValTh : 228 ||.!!||| !|||..!||||||:!!|||.!!! !::!:!!|||!.!.!..!!!.!.. lyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaVa 227493 : GTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGT : 227549 229 : rHisIleCysGlyGlnValGlnIleGlnIleLeuLysLeuGluGluLeu<-><-><-> : 245 !||| !|||||||||:!!:!!:!: !:!:! ! !|||! !.!.||| lHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGly 227550 : TCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGC : 227606 246 : AsnIleAspSerGluGluLysAsnCysAspMetValGlyGluIleIleGlnSerHisT : 264 !.. |||! !...:!!! ! !|||! :!!!.!...|||:!! !|||. ArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValThrHisHisV 227607 : AGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACCACG : 227666 265 : hrGluIleLeu{Ar} >>>> Target Intron 1 >>>> {g}TyrAlaLysIl : 272 .!..!||||||{!.} 396 bp {!}!:! ! :! alArgIleLeu{As}++ ++{n}PheLeuAlaLe 227667 : TTCGAATATTG{AA}gt.........................ag{C}TTTCTGGCCCT : 228086 273 : eIleAlaGluSerPheSerGluIleIlePheMetGluIleMetAlaSerThrPheLeu : 291 !|||! !:!!!!!.!...!:!!||| !|||:!:|||.!!:!:!.!!!!|||.!.:!! uIleGluLysThrMetGlnGlnIleAlaPheValGluPheLeuGlyCysThrIleIle 228087 : CATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGTACAATAATT : 228143 292 : IleCysLeuValGluTyrCysLeuLeuThr >>>> Target Intron 2 >>>> : 302 :!:||||||:!!||||||! !:!!:!!||| 72 bp LeuCysLeuIleGluTyrTyrIleIleThr++ + 228144 : CTGTGCCTCATCGAGTATTACATCATAACGgt.........................a : 228246 303 : GluTrpIleAspSerAsnAlaIleAlaIleThrThrTyrAlaValTyrMetIleSer : 320 ||||||! ! !.!.!. !! ! ! !..!||||||:!!!.!! :!::!!||| +GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSer 228247 : gGAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCC : 228302 321 : LeuThrPheAsnAlaMetIlePheCysTyrIleGlyGlnIleLeuThrAspGlnCys{ : 340 !!!||||||||| ...||||||||||||||||||:!!|||:!!.!!!!:!!. { PheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluHisVal{ 228303 : TTTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACGTA{ : 228362 341 : Se} >>>> Target Intron 3 >>>> {r}GlnIleGlyPheAlaSerTyrGl : 348 !!} 1889 bp {!}:!!:!!||| !||||||.. Ar}-- ++{g}LysValGlyGluLysSerTyrMe 228363 : AG}aa.........................ag{A}AAAGTCGGCGAAAAGTCGTACAT : 230275 349 : nValAsnTrpTyrAsnLeuProProThrGlnAlaArgAsnPheValLeuLeuGlyThr : 367 !:!!.!.||||||...||| !! !!.!:!! !! ! !! !:!!|||:!! !.!! tIleGluTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAla 230276 : GATCGAATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCC : 230332 368 : IleSerLeuTyrProProLysLeuSerGlyGlyLysValThrGluLeuSerLeuAsnT : 387 !!:||| !! ! !! !!|||!!!!!!!.!|||!!.:!!..!|||||||||:!!|||| MetSerAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnT 230333 : ATGTCCAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACA : 230392 388 : hrPheThrSerValAsn : 392 |||||!:!..!|||!:! hrPheSerAspValSer 230393 : CTTTCAGCGACGTAAGT : 230409 vulgar: Lalb_14620 18 392 . KQ414889.1 226915 230409 + 412 M 22 66 G 1 0 M 132 396 G 0 9 M 71 213 G 0 9 M 23 69 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 38 114 S 0 2 5 0 2 I 0 1885 3 0 2 S 1 1 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226916 230409 412 + . gene_id 3 ; sequence Lalb_14620 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226916 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226916 227679 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228363 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228363 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228364 228365 . + . intron_id 3 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local intron 228364 230252 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230251 230252 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230253 230409 . + . KQ414889.1 exonerate:protein2genome:local exon 230253 230409 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226916 230409 412 + . alignment_id 3 ; Query Lalb_14620 ; Align 226916 19 66 ; Align 226982 42 396 ; Align 227387 174 213 ; Align 227609 245 69 ; Align 228077 269 99 ; Align 228248 302 114 ; Align 230254 341 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14620 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 381 Query range: 15 -> 338 Target range: 217150 -> 219439 16 : TyrHisGluGluAspAspIleAspTyrAlaLeuGluMetCysArgTrpValLeuLysP : 35 |||.!. ||| :::|||::: ::!:!!:!! ! !||||||:!!||||||| TyrGluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysP 217151 : TACGAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAAC : 217208 36 : roLeuGlyMetTrpSerLeuValTyrAsnArgThrSerArgTrpGluArgThrValSe : 54 ||:!!|||:!:||| !! !! ..!! !|||!!!|||! ..!!:!! !:!!! roMetGlyLeuTrpPro---AsnSerArgThrThrThrArgSerArgLysIleLeuTy 217209 : CGATGGGTCTTTGGCCA---AACTCACGTACCACCACCAGATCCCGAAAAATCCTCTA : 217262 55 : rIleIleLeuLeuValThrCysPheLeuSerValIleLeuLeuIleValProLeuTyr : 73 !! !:!::!! !!.! !|||!:! !! !:!!! !!!!|||.!!||||||! !! ! rLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSer 217263 : CAAACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCC : 217319 74 : TrpGluIleIleLeuGlyAspIleGlyGlyLysAlaArgIleLysArgLeuGlyAlaT : 93 ! ! :!:.!!|||! !! ! !! ! ! ! ! !!:!:!:|||! !!!!||| !! MetTyrValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProL 217320 : ATGTACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGT : 217379 94 : hrCysAsnCysThrLeuSerAlaValLysTyrMetTyrLeuValLeuArgArgAlaTh : 112 ! ! !|||..!:!!:!! !||||||||| ! !|||:!!:!!!.!!:!||| euIlePheCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAs 217380 : TGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGA : 217436 113 : rPheAlaSerCysIleGluTyrLeuGluAsnAspTrpArgThrValLysAsnGlnHis : 131 !.!! !..!|||:!:..! :!!|||...|||||||||!.!|||!:! !:!! ! pIleArgGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLys 217437 : CATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAA : 217493 132 : HisArgAlaIleMetMetLysGlnAlaThrPheSerArgSerLeuValMetLeuCysI : 151 !!|||! ! |||!!: !.!.|||!.!|||.!!|||!.!||||||:!:||||||! AspArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysT 217494 : GACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTA : 217553 152 : leIlePheIlePheCysGlyGlyIleSerPheHisValMetLeuProLeuSerArgAr : 170 !.!!|||!!:!:! !!||| ::: ::::::::! :!!|||:!!||| ! ! hrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGl 217554 : CCTTCTTCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGG : 217610 171 : gArgValVal<-><-><->GlyAsnTyrThrLeuLysAlaLeuAlaTyrProGlyTyr : 186 !|||:!!:!! |||||| !|||!!!! !!|||!.!!:!||| ! yArgIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThr 217611 : GAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACG : 217667 187 : AspArgPhePheAspIleGlnSerSerProThrTyrGluIleLeuTyrCysIleGlnC : 206 ! !.!!.!!|||! !!::! !!!!|||||| !!||||||:!!!:!! !:!!|||! LysTyrIleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnL 217668 : AAGTATATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAAT : 217727 207 : ysPheGlyGlyPheValArgHisAsnValThrThrAlaThrPheAlaLeuAlaValPh : 225 .!!!.!||| !:!!! !|||...:!!|||:!!|||.!!! !::!||||||!.! euIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAl 217728 : TGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGC : 217784 226 : ePheValThrHisIleCysGlyGlnValGlnIleGlnIleLeuLysLeuGluGluLeu : 244 !|||!.!..!||| !|||||||||:!!:!!:!: !!!: ! !|||:!!.!.||| aPheAlaValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeu 217785 : TTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTA : 217841 245 : <-><-><->AsnIleAspSerGluGluLysAsnCysAspMetValGlyGluIleIleG : 261 !.. |||! !...!!:! !! !! :!!!.!...|||:!!. IleAspGlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValS 217842 : ATCGACGGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCA : 217901 262 : lnSerHisThrGluIleLeuArgTyrAlaLysIleIleAlaGluSerPheSerGluIl : 280 ....!|||..!..!||||||!:!! !!.!!:! |||!.!! ..!! !||| erGlnHisValArgIleLeuLysCysValArg***IleValGlyGluCysSerLeuCy 217902 : GTCAACACGTTCGGATATTAAAGTGTGTAAGATAGATCGTTGGTGAATGCTCGCTTTG : 217958 281 : eIlePheMetGluIleMet{Al} >>>> Target Intron 1 >>>> {a}Ser : 288 !.!!!::.!.:!! |||{ } 1305 bp {!}... sPheTrpPheGlnGlyMet{Ly}-+ ++{s}Lys 217959 : TTTTTGGTTTCAGGGGATG{AA}tt.........................ag{a}aaa : 219287 289 : ThrPheLeuIleCysLeuValGluTyrCysLeuLeuThrGluTrpIleAspSerAsnA : 308 ... ::: ||| :::::: !||||||! !...!:!:!!! TyrIleTyrValAsnLeuTyrLysPheGluTyrGln***GluTrpLysSerAsnAspV 219288 : tatatttacgttaatttgtataaatttgaatatcaatAGGAATGGAAATCGAATGATG : 219347 309 : laIleAlaIleThrThrTyrAlaValTyrMetIleSerLeuThrPheAsnAlaMetIl : 327 .!! ::! !..!|||||| !:!! :!:|||||||||||||||||| ...|| alThrSerAlaValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIl 219348 : TAACGAGTGCAGTGACATACATCATTCTACTTATATCCCTcactttcaacattttcat : 219404 328 : ePheCysTyrIleGlyGlnIleLeuThrAspGln : 338 ||||||||||||||||:!!|||:!!.!!!!:||| ePheCysTyrIleGlyGluIleValAlaGluGln 219405 : attttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: Lalb_14620 15 338 . KQ414889.1 217150 219439 + 381 M 25 75 G 1 0 M 132 396 G 0 9 M 71 213 G 0 9 M 42 126 S 0 2 5 0 2 I 0 1301 3 0 2 S 1 1 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217151 219439 381 + . gene_id 4 ; sequence Lalb_14620 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217151 217980 . + . KQ414889.1 exonerate:protein2genome:local exon 217151 217980 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 217981 217982 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 217981 219285 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219284 219285 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219286 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219286 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217151 219439 381 + . alignment_id 4 ; Query Lalb_14620 ; Align 217151 16 75 ; Align 217226 42 396 ; Align 217631 174 213 ; Align 217853 245 126 ; Align 219287 288 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14620 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 375 Query range: 119 -> 340 Target range: 304413 -> 305217 120 : LeuGluAsnAspTrpArgThrValLysAsnGlnHisHisArgAlaIleMetMetLysG : 139 |||...!.!! !::..! !|||:!!::!! ... !!|||! !!!:|||:!:||| LeuSerThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysT 304414 : CTCTCTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAAT : 304471 140 : lnAlaThrPheSerArgSerLeuValMetLeuCysIleIlePheIlePheCysGlyGl : 158 ! !.! !.!..!!|||!:!|||..!!!::!!||| !||||||!!:!:! !||||| yrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGl 304472 : ACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGG : 304528 159 : yIleSerPheHisValMetLeuProLeuSerArgArgArgValValGlyAsnTyr<-> : 177 |! !! !!:!|||..!:!::!!! !!!!:!!! ! !!! ! !|||! !.!.||| yThrIleTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsn 304529 : CACCATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAAT : 304585 178 : <->ThrLeuLysAlaLeuAlaTyrProGlyTyrAspArgPhePheAspIleGlnSerS : 195 |||:!!||| !!|||!.!|||||| !|||..! !!!.||||||:!!|||!!!| ArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrS 304586 : CGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAA : 304645 196 : erProThrTyrGluIleLeuTyrCysIleGlnCysPheGlyGlyPheValArgHisAs : 214 |||||! !||||||:!::!!|||! !:!!!!.|||.!. !!|||!:!|||! !:!!:: erProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSe 304646 : GCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTC : 304702 215 : nValThrThrAlaThrPheAlaLeuAlaValPhePheValThrHisIleCysGlyGln : 233 !:!!|||.!!!.!.!!! !!.!||||||!.!.!!|||!.!|||||| !||||||||| rIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGln 304703 : TATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAA : 304759 234 : ValGlnIleGlnIleLeuLysLeuGluGluLeuAsnIleAspSerGluGluLysAsnC : 253 :!!.!.||| !!:! !::!|||! !!:||| !! !..!!.!|||..!...:!!! IleAspIleValMetSerArgLeuGlyAspLeuValAsnSerLysGluSerSerAspL 304760 : ATTGATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCATCTGATT : 304819 254 : ysAspMetValGlyGluIleIleGlnSerHisThr{Gl} >>>> Target Intro : 265 |||! ! ! ! !||| ..!||| !{ } 73 bp euAspLysArgLeuIleGluIleValGluHisHis{Le}+- 304820 : TAGATAAACGATTAATAGAAATTGTTGAGCATCAT{TT}gc................. : 304859 266 : n 1 >>>> {u}IleLeuArgTyrAlaLysIleIleAlaGluSerPheSerGluIle : 280 {!}|||! !|||!:!:!! !|||:!: ! ! !!!...!|||:!! -+{u}IleTyrArgPheSerAlaIleValGlnThrValLeuGlnGluVal 304860 : ........tg{A}ATTTATAGATTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTA : 304973 281 : IlePheMetGluIleMetAlaSerThrPheLeuIleCysLeuValGluTyrCysLeuL : 300 !|||:!!|||.!!!!:!.!||||||!!.||||||||||||:!!||||||! !! !: CysPheLeuGluPheIleGlySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysI 304974 : TGCTTCTTGGAATTCATTGGTTCTACCTTACTGATATGTCTACTTGAATACTACTGTA : 305033 301 : euThr >>>> Target Intron 2 >>>> GluTrpIleAspSerAsnAlaIle : 309 !!||| 62 bp !!:||| ..!||||||.!!:!! leThr++ ++AspTrpGluSerSerAsnThrVal 305034 : TAACGgt.........................agGATTGGGAGAGCAGTAATACCGTT : 305122 310 : AlaIleThrThrTyrAlaValTyrMetIleSerLeuThrPheAsnAlaMetIlePheC : 329 ::!:!!|||||||||.!!|||! :!!||||||:!!||||||||| !.!.|||!!.| SerLeuThrThrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuC 305123 : AGTCTTACAACATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTAT : 305182 330 : ysTyrIleGlyGlnIleLeuThrAspGlnCysSer : 340 |||||||||||:!!||||||! !!!::!! ||| ysTyrIleGlyGluIleLeuMetGluLysValSer 305183 : GCTACATTGGTGAGATTCTTATGGAAAAGGTGagt : 305217 vulgar: Lalb_14620 119 340 . KQ414889.1 304413 305217 + 375 M 57 171 G 0 6 M 88 264 S 0 2 5 0 2 I 0 69 3 0 2 S 1 1 M 36 108 5 0 2 I 0 58 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304414 305217 375 + . gene_id 5 ; sequence Lalb_14620 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 304414 304856 . + . KQ414889.1 exonerate:protein2genome:local exon 304414 304856 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 304857 304858 . + . intron_id 1 ; splice_site "GC" KQ414889.1 exonerate:protein2genome:local intron 304857 304929 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304928 304929 . + . intron_id 0 ; splice_site "TG" KQ414889.1 exonerate:protein2genome:local cds 304930 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304930 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 1 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305217 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305217 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304414 305217 375 + . alignment_id 5 ; Query Lalb_14620 ; Align 304414 120 171 ; Align 304591 177 264 ; Align 304931 266 108 ; Align 305101 302 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14620 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 343 Query range: 17 -> 201 Target range: 294669 -> 295227 18 : GluGluAspAspIleAspTyrAlaLeuGluMetCysArgTrpValLeuLysProLeuG : 37 .!...!:!!|||:!:! !!::!|||:!! |||||| !!:!!|||||||||:!!| AsnArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleG 294670 : AACAGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCG : 294727 38 : lyMetTrpSerLeuValTyrAsnArgThrSerArgTrpGluArgThrValSerIleIl : 56 ||:!:||| !!|||:!!|||!:!!.!||||||!:! !.!.!:!..!:!!|||||||| lyLeuTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIl 294728 : GTCTTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAAT : 294784 57 : eLeuLeuValThrCysPheLeuSerValIleLeuLeuIleValProLeuTyrTrpGlu : 75 ||||:!!!.! !||| |||!!!|||:!:!!!:!!:!!||||||! ! !:: eLeuIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPhe 294785 : TCTGATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTC : 294841 76 : IleIleLeuGlyAspIleGlyGlyLysAlaArgIleLysArgLeuGlyAlaThrCysA : 95 !:!!!!! !! ... ||| ::!!!:|||! !|||||| !!..! CysValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuT 294842 : TGTGTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTAT : 294901 96 : snCysThrLeuSerAlaValLysTyrMetTyrLeuValLeuArgArgAlaThrPheAl : 114 !!! !! !|||||| !:!!!:!|||! ! !|||||||||!:!! ! !!.!!||| yrSerMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLy 294902 : ACTCTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAA : 294958 115 : aSerCysIleGluTyrLeuGluAsnAspTrpArgThrValLysAsnGlnHisHisArg : 133 ! !||||||||| !!:!!||||||||||||!:! !:!! ! |||! !.!.|||||| sHisCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArg 294959 : GCATTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGA : 295015 134 : AlaIleMetMetLysGlnAlaThrPheSerArgSerLeuValMetLeuCysIleIleP : 153 |||||||||!!:|||.!.|||! ! !!!!!!:!!!!:!!..!:!: !! !! !|||. AlaIleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleI 295016 : GCGATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTA : 295075 154 : heIlePheCysGlyGlyIleSerPheHisValMetLeuProLeuSerArgArgArgVa : 172 !.|||!:! !!..!!.!:!:|||!:!|||!.!!!::::|||... ... :! leIleTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLe 295076 : TAATCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTT : 295132 173 : lValGly<-><->AsnTyrThrLeuLysAlaLeuAlaTyrProGlyTyrAspArgPhe : 189 !! !..! ||| !!|||:!!:::|||||| !! !|||||||||!!: !||| uGluAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPhe 295133 : GGAGAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTC : 295189 190 : PheAspIleGlnSerSerProThrTyrGluIleLeu : 201 ! ||| ! ! |||||||||||||||||||||:!! ValAspAlaTyrSerSerProThrTyrGluIleIle 295190 : GTAGACGCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: Lalb_14620 17 201 . KQ414889.1 294669 295227 + 343 M 157 471 G 0 6 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294670 295227 343 + . gene_id 6 ; sequence Lalb_14620 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294670 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294670 295227 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294670 295227 343 + . alignment_id 6 ; Query Lalb_14620 ; Align 294670 18 471 ; Align 295147 175 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14620 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 315 Query range: 18 -> 268 Target range: 208197 -> 208962 19 : GluAspAspIleAspTyrAlaLeuGluMetCysArgTrpValLeuLysProLeuGlyM : 38 :!!:!!|||:!:..!!:! !:!!...:!! ! !|||..!|||||| !:!!||| LysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuLysIleIleGlyS 208198 : AAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGAAGATAATCGGCT : 208255 39 : etTrpSerLeuValTyrAsnArgThrSerArgTrpGluArgThrValSerIleIleLe : 57 ||| !! ! ! :!!||| ||| !!! |||!.!!:! ! !|||:!!|| erTrpProArgSerIleAspArg---SerTrpLeuGluAsnSerGlnHisIleLeuLe 208256 : CCTGGCCGAGATCTATAGATCGT---TCCTGGTTAGAGAACAGCCAGCATATTCTCTT : 208309 58 : uLeuValThrCysPheLeuSerValIleLeuLeuIleValProLeuTyrTrpGluIle : 76 | !||| ! !! !! !! !:!! !!!!:!!:!::!!||| ! ! ! uAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGlyMetPheAla 208310 : AAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATGTTCGCG : 208366 77 : IleLeuGlyAspIleGlyGlyLysAlaArgIleLysArgLeuGlyAlaThrCysAsnC : 96 ||||||! !! ! ! ! ! ! ! !!:!:!!|||! !! !.!!||| ! !! !! IleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaLeuSerPheP 208367 : ATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTCTGAGCTTCT : 208426 97 : ysThrLeuSerAlaValLysTyrMetTyrLeuValLeuArgArgAlaThrPheAlaSe : 115 !! !:!!:!! !..!||||||:!! !:!!..!:!!|||..!!.! !.!. !!. heMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAspIleArgLy 208427 : TCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGACATACGGAA : 208483 116 : rCysIleGluTyrLeuGluAsnAspTrpArgThrValLysAsnGlnHisHisArgAla : 134 !|||:!!||||||:!!||| !|||||||||!.!|||:!!:!!:!!.!. !!||| ! sCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGluAspArgLys 208484 : GTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAGGACAGGAAG : 208540 135 : IleMetMetLysGlnAlaThrPheSerArgSerLeuValMetLeuCysIleIlePheI : 154 ||||||:!! ! .!.|||!:!|||:!!|||!.!|||:!!:!!:!!||| ! !|||! IleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysGlyAlaPheM 208541 : ATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCGGAGCTTTCA : 208600 155 : lePheCysGlyGlyIleSerPheHisValMetLeuProLeuSerArgArgArgValVa : 173 !:!:! ! ||| ||| :::::::!! |||||||||!!!||| !!:!||||| etTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAspLysValVa 208601 : TGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGACAAGGTCGT : 208657 174 : l<-><-><->GlyAsnTyrThrLeuLysAlaLeuAlaTyrProGlyTyrAspArgPhe : 189 | ||||||! |||! !!:! !|||!.!||||||! ! ! ! !.!! lGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValProLysPheIle 208658 : CGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCTAAGTTCATT : 208714 190 : PheAspIleGlnSerSerProThrTyrGluIleLeuTyrCysIleGlnCysPheGlyG : 209 .!.|||:!!!:!! !||||||..! !!||||||!!!||| :!!|||! !!...!| LeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnLeuLeuSerG 208715 : CTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAATTGTTGTCGG : 208774 210 : lyPheValArgHisAsnValThrThrAlaThrPheAlaLeuAlaValPhePheValTh : 228 |||||||| !||||||:!!|||..!!.!.!!! !!.!||||||!.!.!..!!!.!! lyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLeuLeuAlaMe 208775 : GTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCTGCTCGCGAT : 208831 229 : rHisIleCysGlyGlnValGlnIleGlnIleLeuLysLeuGluGluLeu<-><->Asn : 245 !||| |||||||||:!!|||||| !!!:! ! !:!!|||:!!||| ... tHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeuValAspGly 208832 : GCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTGGTCGATGGA : 208888 246 : IleAspSerGluGluLysAsnCysAspMet<->ValGlyGluIleIleGlnSerHisT : 264 !!:..!||||||||||||! |||..! :!!!.!.!.|||:!::!!..!|||. ArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleValGluGlnHisV 208889 : CGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCGTGGAGCAGCATG : 208948 265 : hrGluIleLeuArg : 268 .!..!:!::!!!:! alArgValIleLys 208949 : TTCGAGTGATCAAG : 208962 vulgar: Lalb_14620 18 268 . KQ414889.1 208197 208962 + 315 M 27 81 G 1 0 M 127 381 G 0 9 M 71 213 G 0 6 M 11 33 G 0 3 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208198 208962 315 + . gene_id 7 ; sequence Lalb_14620 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208198 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208198 208962 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208198 208962 315 + . alignment_id 7 ; Query Lalb_14620 ; Align 208198 19 81 ; Align 208279 47 381 ; Align 208669 174 213 ; Align 208888 245 33 ; Align 208924 256 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14620 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 311 Query range: 6 -> 244 Target range: 221327 -> 222047 7 : AspThrValValArgThrLeuLysLysTyrHisGluGluAspAspIleAspTyrAlaL : 26 |||!:!:!! ! !|||! ! :!!||| !! ! :!! :!!:!: ! ! ::!: AspSerLeuSerSerThrArgValGluTyrAspTyrLysThrAsnValLysLeuSerV 221328 : GACAGTCTGTCTTCGACTCGTGTTGAATACGATTACAAGACGAACGTGAAATTGAGCG : 221385 27 : euGluMetCysArgTrpValLeuLysProLeuGlyMetTrpSerLeuValTyrAsnAr : 45 !!:!!:!! !!||||||:!!|||||||||:!!|||:!:||| !! ! ! !||| alGlnLeuSerArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaAsn-- 221386 : TGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAAC-- : 221442 46 : gThrSerArgTrpGluArgThrValSerIleIleLeuLeuValThrCysPheLeuSer : 64 ! !|||! ! |||||| !:!!! ! :!::!! !|||..!|||!:! ! ! -IleSerThrValGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLeu 221443 : -ATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCTG : 221496 65 : ValIleLeuLeuIleValProLeuTyrTrpGluIleIleLeuGlyAspIleGlyGlyL : 84 :!!! !!!|||:!:||||||! ! ! ! :!:||||||! !! !! !! ! IleThrPheLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspValT 221497 : ATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTCT : 221556 85 : ysAlaArgIleLysArgLeuGlyAlaThrCysAsnCysThrLeuSerAlaValLysTy : 103 ! !||||||||| !|||||| !! ! !! !|||..!:!!:!! !:!!||||| yrAsnArgIleLysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysTy 221557 : ACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTA : 221613 104 : rMetTyrLeuValLeuArgArgAlaThrPheAlaSerCysIleGluTyrLeuGluAsn : 122 | |||:!!||| !..! ! !.!! !..!||||||||| !:!!||| rHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTrp 221614 : TCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATGG : 221670 123 : AspTrpArgThrValLysAsnGlnHisHisArgAlaIleMetMetLysGlnAlaThrP : 142 ||||||!:!!.!:!!! !!... ! !!!:!! !||||||!!::!!.!.|||! !| AspTrpLysAsnIleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIleP 221671 : GATTGGAAGAATATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATTT : 221730 143 : heSerArgSerLeuValMetLeuCysIleIlePheIlePheCysGlyGlyIleSerPh : 161 ||.!!||| !!|||:!!|||:!!|||! !.!!|||!!:!:! !!||| ::: :: heGlyArgArgLeuIleMetIleCysThrPhePheMetTyrSerGlyPheValPheTy 221731 : TTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGTACAGTggtttcgtttttta : 221787 162 : eHisValMetLeuProLeuSerArgArgArgValValGly<-><-><->AsnTyrThr : 177 ::::::! :!!|||!!!||| ! !!!:!:!! !!.! ||| ||| rTyrIleAlaIleProPheSerValGlyLysIleProAlaGlnAspValAsnValThr 221788 : ttacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaact : 221844 178 : LeuLysAlaLeuAlaTyrProGlyTyrAspArgPhePheAspIleGlnSerSerProT : 197 ... !!:!!!.!!:!||| !! !.!! !!|||! !!:!! !||||||. PheIleProMetValPheProPheSerArgPheIleValAspThrArgTyrSerProV 221845 : tttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCTG : 221904 198 : hrTyrGluIleLeuTyrCysIleGlnCysPheGlyGlyPheValArgHisAsnValTh : 216 .! !!|||||||||!:!! :!!||| !.!.!.!||| !:!!! !|||!:!:!!|| alAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleTh 221905 : TAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTAC : 221961 217 : rThrAlaThrPheAlaLeuAlaValPhePheValThrHisIleCysGlyGlnValGln : 235 |:!!|||.!!! !::!|||!.!!.!.!.|||!.!..!||| !|||||||||:!!||| rSerAlaAlaCysSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMetGln 221962 : ATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCAA : 222018 236 : IleGlnIleLeuLysLeuGluGluLeu : 244 :!: !!!: ! !|||:!!.!.||| ValLeuMetSerTrpLeuLysHisLeu 222019 : GTGTTGATGAGCTGGCTGAAACATTTG : 222047 vulgar: Lalb_14620 6 244 . KQ414889.1 221327 222047 + 311 M 38 114 G 1 0 M 129 387 G 0 9 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221328 222047 311 + . gene_id 8 ; sequence Lalb_14620 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221328 222047 . + . KQ414889.1 exonerate:protein2genome:local exon 221328 222047 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221328 222047 311 + . alignment_id 8 ; Query Lalb_14620 ; Align 221328 7 114 ; Align 221442 46 387 ; Align 221838 175 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14620 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 283 Query range: 22 -> 251 Target range: 259769 -> 260462 23 : AspTyrAlaLeuGluMetCysArgTrpValLeuLysProLeuGlyMetTrpSerLeuV : 42 ||||||::!|||:!!.!. !|||||| !!|||||||||:!!||| ||| !! AspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpPro---P 259770 : GACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCA---C : 259824 43 : alTyrAsnArgThrSerArgTrpGluArgThrValSerIleIleLeuLeuValThrCy : 61 !! ::! !|||!!!||| |||!:!! !:!!|||:!!||||||:!! !!! !|| roSerSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCy 259825 : CTTCATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTG : 259881 62 : sPheLeuSerValIleLeuLeuIleValProLeuTyrTrpGluIleIleLeuGlyAsp : 80 |!:! !!!!:!!:!::!! !:!::!!|||! ! .!.!!::!!|||! ! ! sTyrSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLys 259882 : CTACAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAG : 259938 81 : IleGlyGlyLysAlaArgIleLysArgLeuGlyAlaThrCysAsnCysThrLeuSerA : 100 .!! ! ! !!:!! ||| !|||||| !! ! !:!!!! !:!!.!!. GluSerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyC 259939 : GAGAGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCT : 259998 101 : laValLysTyrMetTyrLeuValLeuArgArgAlaThrPheAlaSerCysIleGluTy : 119 .!:!!!!.|||! |||:!!|||||| !! ! !.!. !||||||:!:|||:! ysIleAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHi 259999 : GTATTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACA : 260055 120 : rLeuGluAsnAspTrpArgThrValLysAsnGlnHisHisArgAlaIleMetMetLys : 138 !:!!|||||||||||||||! !:!!! !!..:!! ! !!!:! !:!:|||:!!!:! sValGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArg 260056 : CGTGGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGA : 260112 139 : GlnAlaThrPheSerArgSerLeuValMetLeuCysIleIlePheIlePheCysGlyG : 158 ! |||! !|||.!!|||! !:!!!.! ! !||| !|||:!: !!|||! TyrAlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyV 260113 : TACGCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAG : 260172 159 : lyIleSerPheHisValMetLeuProLeuSerArgArgArgVal<->ValGlyAsnTy : 176 !:!:!!!||| !:!!:!: ! !||||||! !..! !:!! ||||||||| ! alLeuCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGl 260173 : TTCTGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGA : 260229 177 : rThr<-><->LeuLysAlaLeuAlaTyrProGlyTyrAspArgPhePheAspIleGln : 193 ||| :!! ! !||| !!! ! !!! !||| ! ..!.!..!.:!!:!:.!. uThrArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsn 260230 : GACGAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAAC : 260286 194 : SerSerProThrTyrGluIleLeuTyrCysIleGlnCysPheGlyGlyPheValArgH : 213 ..!||||||! ! !!||||||:!! ! !:!:|||! ! !!..!||||||:!! !: AspSerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValA 260287 : GACAGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGA : 260346 214 : isAsnValThrThrAlaThrPheAlaLeuAlaValPhePheValThrHisIleCysGl : 232 !!::: !|||..!!.!! !|||::!||||||!.! !!.!...!.!!||| ||||| snSerSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGl 260347 : ATTCGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGG : 260403 233 : yGlnValGlnIleGlnIleLeuLysLeuGluGluLeuAsnIleAspSerGluGluLys : 251 ||||:!!.!.:!:! !!: ! !:!! !|||!!! !!!:|||..!.!.!:! yGlnLeuAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArg 260404 : CCAGTTGAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGG : 260460 vulgar: Lalb_14620 22 251 . KQ414889.1 259769 260462 + 283 M 18 54 G 1 0 M 131 393 G 0 3 M 5 15 G 0 6 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259770 260462 283 + . gene_id 9 ; sequence Lalb_14620 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259770 260462 . + . KQ414889.1 exonerate:protein2genome:local exon 259770 260462 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 259770 260462 283 + . alignment_id 9 ; Query Lalb_14620 ; Align 259770 23 54 ; Align 259824 42 393 ; Align 260220 173 15 ; Align 260241 178 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14620 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 248 Query range: 22 -> 252 Target range: 262846 -> 263542 23 : AspTyrAlaLeuGluMetCysArgTrpValLeuLysProLeuGlyMetTrpSerLeuV : 42 ||||||::!|||:!!!!: !||||||:!!|||||||||:!!||| ||| !!||| AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 43 : alTyrAsnArgThrSerArgTrpGluArgThrValSerIleIleLeuLeuValThrCy : 61 ! !::: ! !|||||| !||||||! !:!!!!!.!!:!!|||:!!|||..!|| erAlaSer---IleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCy 262905 : CCGCCTCG---ATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTG : 262958 62 : sPheLeuSerValIleLeuLeuIleValProLeuTyrTrpGluIleIleLeuGlyAsp : 80 |!:!! ! !:!!:!!! ! !:!!:!!|||! ! .!.|||:!!|||! !! ! sTyrCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAla 262959 : TTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCC : 263015 81 : IleGlyGlyLysAlaArgIleLysArgLeuGlyAlaThrCysAsnCysThrLeuSerA : 100 ..! ! ! !!:!:!::!! !|||||| !! ! !!.!.!! !:!!.!! GluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyM 263016 : GAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTA : 263075 101 : laValLysTyrMetTyrLeuValLeuArgArgAlaThrPheAlaSerCysIleGluTy : 119 !:!!!!.|||! !::|||:!!|||!.!!!! ! !.!. !.!!|||:!::!!:! etIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHi 263076 : TGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACA : 263132 120 : rLeuGluAsnAspTrpArgThrValLysAsnGlnHisHisArgAlaIleMetMetLys : 138 !:!!:!!.!.|||||| !!! !|||! !.. !.!. !!!:! !||||||:!!||| sValGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLys 263133 : CGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAG : 263189 139 : GlnAlaThrPheSerArgSerLeuValMetLeuCysIleIlePheIlePheCysGlyG : 158 .!.|||! !!:!.!!|||! !:!!!.! ! !||| ||||||!!: .!! AsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerI 263190 : AACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCA : 263249 159 : lyIleSerPheHisValMetLeuProLeuSerArgArgArgValVal<->GlyAsnTy : 176 !!!:!!! !:!!:!: ! !!!!!!!!! !!:! !:!!! ! |||||| ! leMetCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGl 263250 : TCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGA : 263306 177 : rThr<-><->LeuLysAlaLeuAlaTyrProGlyTyrAspArgPhePheAspIleGln : 193 ||| |||::: !||| !!! !|||! !||| ! ..!.!!.!! :!!.!. uThrArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAsp 263307 : GACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGAC : 263363 194 : SerSerProThrTyrGluIleLeuTyrCysIleGlnCysPheGlyGlyPheValArgH : 213 !!!!:!|||||| !!||||||!!! !..!! |||! !.!...!||||||:!! ! ThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValT 263364 : ACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCA : 263423 214 : isAsnValThrThrAlaThrPheAlaLeuAlaValPhePheValThrHisIleCysGl : 232 ! ..!|||..!!.!.!!|||!.!:!!.!!!.! ! |||!.! !||| !||||| hrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGl 263424 : CCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGG : 263480 233 : yGlnValGlnIleGlnIleLeuLysLeuGluGluLeuAsnIleAspSerGluGluLys : 251 ||||:!!.!.:!: !!!:! ! !:!! !|||!!! ! !.!.|||..!!!::!! yGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGlu 263481 : ACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAG : 263537 252 : Asn : 252 ||| Asn 263538 : AAT : 263542 vulgar: Lalb_14620 22 252 . KQ414889.1 262846 263542 + 248 M 22 66 G 1 0 M 128 384 G 0 3 M 4 12 G 0 6 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 263542 248 + . gene_id 10 ; sequence Lalb_14620 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262847 263542 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263542 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 262847 263542 248 + . alignment_id 10 ; Query Lalb_14620 ; Align 262847 23 66 ; Align 262913 46 384 ; Align 263300 174 12 ; Align 263318 178 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14620 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 244 Query range: 18 -> 272 Target range: 212857 -> 213634 19 : GluAspAspIleAspTyrAlaLeuGluMetCysArgTrpValLeuLysProLeuGlyM : 38 ||| ! :::::: :::::: ! ! !||||||:!!||||||||| !|||: GluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrGlyL 212858 : GAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTT : 212915 39 : etTrpSerLeuValTyrAsnArgThrSerArgTrpGluArgThrValSerIleIleLe : 57 !!||| !! ! ! ! ::! !..!|||! ! |||!:!!.!:!!:!! !:!::! euTrpPro---AspLysSerTyrValSerProIleGluLysAsnIleAlaArgLeuVa 212916 : TGTGGCCC---GACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGT : 212969 58 : uLeuValThrCysPheLeuSerValIleLeuLeuIleValProLeuTyrTrpGluIle : 76 ! !..!..!|||!:! !! !:!! !! !|||:!!:!!|||! ! !! ! ! :!: lAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrVal 212970 : CAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTG : 213026 77 : IleLeuGlyAspIleGlyGlyLysAlaArgIleLysArgLeuGlyAlaThrCysAsnC : 96 .!!|||! !! ... ...|||:!! !!!!||| ! !... !| PheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheC 213027 : TTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTT : 213086 97 : ysThrLeuSerAlaValLysTyrMetTyrLeuValLeuArgArgAlaThrPheAlaSe : 115 ||..! !:!! ! !|||||| ! |||:!!|||!.! !!! ! !.!! !!! ysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgTh 213087 : GCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTAC : 213143 116 : rCysIleGluTyrLeuGluAsnAspTrpArgThrValLysAsnGlnHisHisArgAla : 134 !|||:!!|||:!!:!!:!! !!||||||!:!!.!:!!! !:!!:!!.!. !!!:!! ! rCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGlu 213144 : GTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAA : 213200 135 : IleMetMetLysGlnAlaThrPheSerArgSerLeuValMetLeuCysIleIlePheI : 154 |||||| ! !.!.|||!:!|||.!!!:!!!!:!!|||! :!!||| !.!!|||! IleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPhePheM 213201 : ATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCA : 213260 155 : lePheCysGlyGlyIleSerPheHisValMetLeuProLeuSerArgArgArgValVa : 173 !:!:! ||| !! ! !!:! !:!!:!::!!|||:!!||| ! !!:!:!!|| etTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLysMetVa 213261 : TGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGT : 213317 174 : lGly<-><-><->AsnTyrThrLeuLysAlaLeuAlaTyrProGlyTyrAspArgPhe : 189 |!.! ||| |||!!!!:! !:!!!.! !|||! !! !.!! lAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSerArgPheIle 213318 : AGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATC : 213374 190 : PheAspIleGlnSerSerProThrTyrGluIleLeuTyrCysIleGlnCysPheGlyG : 209 !!|||:!!!:!! !||||||..! !!||||||!!!!:!! |||||| !.!.!.!| ValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleIleAlaG 213375 : GTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTG : 213434 210 : lyPheValArgHisAsnValThrThrAlaThrPheAlaLeuAlaValPhePheValTh : 228 || ! :!!! !||| !:!!.!!..!!.!.!!! !::!||||||!.! ! |||!.!.. lyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPheAlaVa 213435 : GAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGT : 213491 229 : rHisIleCysGlyGlnValGlnIleGlnIleLeuLysLeuGluGluLeuAsnIleAsp : 247 !||| !|||||||||:!! ||| !!!: ! !||||||.!.|||! !! ! lHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGly 213492 : TCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGT : 213548 248 : SerGluGlu<-><->LysAsnCys<->AspMetValGlyGluIleIleGlnSerHisT : 264 !!!|||!!: |||||| |||! :!!!.!! |||:!:.!...!|||. ArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleValAsnGlnHisV 213549 : AGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATG : 213608 265 : hrGluIleLeuArgTyrAlaLysIle : 272 .!..!||||||!:!!::!.!:!!:!: alArgIleLeuLysTrpValGluLeu 213609 : TGCGGATACTGAAGTGGGTGGAATTG : 213634 vulgar: Lalb_14620 18 272 . KQ414889.1 212857 213634 + 244 M 22 66 G 1 0 M 133 399 G 0 9 M 76 228 G 0 6 M 3 9 G 0 3 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212858 213634 244 + . gene_id 11 ; sequence Lalb_14620 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212858 213634 . + . KQ414889.1 exonerate:protein2genome:local exon 212858 213634 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212858 213634 244 + . alignment_id 11 ; Query Lalb_14620 ; Align 212858 19 66 ; Align 212924 42 399 ; Align 213332 175 228 ; Align 213566 251 9 ; Align 213578 254 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14620 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 173 Query range: 294 -> 391 Target range: 297439 -> 297803 295 : ValGluTyrCysLeuLeuThrGluTrpIleAspSerAsnAlaIleAlaIleThrThrT : 314 ::::::||| ...... !|||! ! ! !:!! !||| ! ..!||| LeuLysTyrHisPhePheGlnGlyTrpLysThrHisAspMetIlePheGlyValThrI 297440 : ttaaaatatcatttttttcaggGATGGAAAACTCACGATATGATTTTTGGGGTAACGA : 297497 315 : yrAlaValTyrMetIleSerLeuThrPheAsnAlaMetIlePheCysTyrIleGlyGl : 333 !!.!! !!:!|||:!!|||:!!||||||||| !.!.:!!!!.|||:!! !|||:! leGlyGlyPheMetLeuSerIleThrPheAsnIlePheValLeuCysHisAlaGlyGl 297498 : TCGGCGGTTTCATGCTTTCGATCACTTTTAATATATTCGTATTATGTCATGCAGGTGA : 297554 334 : nIleLeuThrAspGlnCysSerGlnIleGlyPheAla{S} >>>> Target Intr : 346 !:!!|||..!!!::!! !!:!!:!: ||| !{|} 76 bp uLeuLeuValGluGluValProLysVal---PheLeu{S}++ 297555 : ACTTCTTGTCGAGGAGGTACCGAAAGTG---TTTCTA{T}gt................ : 297593 347 : on 1 >>>> {er}TyrGlnValAsnTrpTyrAsnLeuProProThrGlnAlaArgA : 361 {||}|||.!.:!!.!.||||||||||||||||||!.!::!|||! !: ++{er}TyrAsnIleGluTrpTyrAsnLeuProProAsnArgAlaLeuA 297594 : .........ag{CT}TATAACATCGAATGGTACAACTTACCGCCAAACAGGGCTCTCG : 297711 362 : snPheValLeuLeuGlyThrIleSerLeuTyrProProLysLeuSerGlyGlyLysVa : 380 !!.!.||||||:!! ! !|||:!! !!:!||||||!:!|||!!!|||||||||:: spLeuValLeuMetIleGlyIleAlaLysPheProProArgLeuThrGlyGlyLysIl 297712 : ATCTGGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCACAggtggaaaaat : 297768 381 : lThrGluLeuSerLeuAsnThrPheThrSerVal : 391 : ::::::|||:!!|||||||||!:!:!!||| ePheAspIleSerIleAsnThrPheSerAlaVal 297769 : attcgatatatCGATAAACACGTTCAGTGCCGTA : 297803 vulgar: Lalb_14620 294 391 . KQ414889.1 297439 297803 + 173 M 48 144 G 1 0 M 2 6 S 0 1 5 0 2 I 0 72 3 0 2 S 1 2 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297440 297803 173 + . gene_id 12 ; sequence Lalb_14620 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 297440 297590 . + . KQ414889.1 exonerate:protein2genome:local exon 297440 297590 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 297591 297592 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 297591 297666 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 297665 297666 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 297667 297803 . + . KQ414889.1 exonerate:protein2genome:local exon 297667 297803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297440 297803 173 + . alignment_id 12 ; Query Lalb_14620 ; Align 297440 295 144 ; Align 297584 344 6 ; Align 297669 347 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14620 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 293 -> 338 Target range: 214605 -> 214740 294 : LeuValGluTyrCysLeuLeuThrGluTrpIleAspSerAsnAlaIleAlaIleThrT : 313 :::|||:::::: :::||| ||||||! !...!:!||| !! !.!!! !..!| IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 314 : hrTyrAlaValTyrMetIleSerLeuThrPheAsnAlaMetIlePheCysTyrIleGl : 332 |||||!.!|||! |||||||||||||||||| ...||||||||||||||||| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 333 : yGlnIleLeuThrAspGln : 338 |:!!:!!:!!:!!!!:||| yGluLeuValSerGluGln 214721 : CGAGCTTGTGTCTGAACAG : 214740 vulgar: Lalb_14620 293 338 . KQ414889.1 214605 214740 + 119 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 214740 119 + . gene_id 13 ; sequence Lalb_14620 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 214740 119 + . alignment_id 13 ; Query Lalb_14620 ; Align 214606 294 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14620 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 277 -> 347 Target range: 280019 -> 280229 278 : SerGluIleIlePheMetGluIleMetAlaSerThrPheLeuIleCysLeuValGluT : 297 ..!!!::!! !!:!.!..!.|||:!: !:!!! !.!! !.!! !:!! !..!! AspAspLeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerL 280020 : GACGACTTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGT : 280077 298 : yrCysLeuLeuThrGluTrpIleAspSerAsnAlaIleAlaIleThrThrTyrAlaVa : 316 ! :!!!!! !|||||| .!.!:!:!!||||||!.!! !|||||| !:! euSerValPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMe 280078 : TGTCAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAAT : 280134 317 : lTyrMetIleSerLeuThrPheAsnAlaMetIlePheCysTyrIleGlyGlnIleLeu : 335 !!:!:!:||||||||||||||||||!.!.!.|||.!!||||||||||||:!!|||||| tPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeu 280135 : GTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTC : 280191 336 : ThrAspGlnCysSerGlnIleGlyPheAlaSerTyr : 347 :!!!!:||| |||... ..!! !||| SerGluGlnValPhePheIleSerSerThrIleTyr 280192 : TCCGAACaggtatttttcatttcttcaacGATCTAT : 280229 vulgar: Lalb_14620 277 347 . KQ414889.1 280019 280229 + 119 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280020 280229 119 + . gene_id 14 ; sequence Lalb_14620 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280020 280229 . + . KQ414889.1 exonerate:protein2genome:local exon 280020 280229 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280020 280229 119 + . alignment_id 14 ; Query Lalb_14620 ; Align 280020 278 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14620 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 301 -> 341 Target range: 272836 -> 272956 302 : GluTrpIleAspSerAsnAlaIleAlaIleThrThrTyrAlaValTyrMetIleSerL : 321 ||||||! !||| !:!! ! ::!:!!||||||||| !:!! :!:||||||: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 322 : euThrPheAsnAlaMetIlePheCysTyrIleGlyGlnIleLeuThrAspGlnCysSe : 340 !:||||||||| ...||| ||||||||||||:!!|||||||||!!:::! ! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArgValMe 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGGTAAT : 272951 341 : rGln : 341 ||| tGln 272952 : gcaa : 272956 vulgar: Lalb_14620 301 341 . KQ414889.1 272836 272956 + 112 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 272956 112 + . gene_id 15 ; sequence Lalb_14620 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272837 272956 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272956 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 272956 112 + . alignment_id 15 ; Query Lalb_14620 ; Align 272837 302 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14620 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 298 -> 338 Target range: 210654 -> 210774 299 : LeuLeuThrGluTrpIleAspSerAsnAlaIleAlaIleThrThrTyrAlaValTyrM : 318 |||||| !|||||| !..!!.!:!! !!|||::!! ! !|||||| !||| !: LeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValLeuL 210655 : CTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTACTCC : 210712 319 : etIleSerLeuThrPheAsnAlaMetIlePheCysTyrIleGlyGlnIleLeuThrAs : 337 !:! !|||:!!||||||||| !.!.||||||||||||||||||:!!:!:|||.!!!! euThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAlaGl 210713 : TCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGCTGA : 210769 338 : pGln : 338 :||| uGln 210770 : ACAg : 210774 vulgar: Lalb_14620 298 338 . KQ414889.1 210654 210774 + 107 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210655 210774 107 + . gene_id 16 ; sequence Lalb_14620 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 210655 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210655 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210655 210774 107 + . alignment_id 16 ; Query Lalb_14620 ; Align 210655 299 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14620 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 296 -> 342 Target range: 261718 -> 261856 297 : TyrCysLeuLeuThrGluTrpIleAspSerAsnAlaIleAlaIleThrThrTyrAlaV : 316 ::: |||||| |||||| !!!:..!:!! ! ! !:!::!!|||||| !: PhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheM 261719 : ttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCA : 261776 317 : alTyrMetIleSerLeuThrPheAsnAlaMetIlePheCysTyrIleGlyGlnIleLe : 335 !! :!!|||:!!:!! !||||||!.!.!.|||.!!||||||||||||:!!||||| etMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLe 261777 : TGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACT : 261833 336 : uThrAspGlnCysSerGlnIle : 342 ||||!!:||| ..!!!.:!: uThrGluGlnValGlnHisLeu 261834 : AACGGAACAGGTACAACATTTG : 261856 vulgar: Lalb_14620 296 342 . KQ414889.1 261718 261856 + 106 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261719 261856 106 + . gene_id 17 ; sequence Lalb_14620 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 261719 261856 . + . KQ414889.1 exonerate:protein2genome:local exon 261719 261856 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 261719 261856 106 + . alignment_id 17 ; Query Lalb_14620 ; Align 261719 297 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14620 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 301 -> 338 Target range: 224323 -> 224434 302 : GluTrpIleAspSerAsnAlaIleAlaIleThrThrTyrAlaValTyrMetIleSerL : 321 |||||| ...|||:!! !! !::! ..!|||||| !:!! :!:!!:|||| GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 322 : euThrPheAsnAlaMetIlePheCysTyrIleGlyGlnIleLeuThrAspGln : 338 ||||||||||| ...||||||||||||||||||:!!:!::!!.!!!!:||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcag : 224434 vulgar: Lalb_14620 301 338 . KQ414889.1 224323 224434 + 104 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224434 104 + . gene_id 18 ; sequence Lalb_14620 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224434 104 + . alignment_id 18 ; Query Lalb_14620 ; Align 224324 302 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14620 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 301 -> 338 Target range: 286878 -> 286989 302 : GluTrpIleAspSerAsnAlaIleAlaIleThrThrTyrAlaValTyrMetIleSerL : 321 |||||| .!.|||.!..!!|||!.!! ! !||||||..!..!! :!!:!!|||! GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerP 286879 : GAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTT : 286936 322 : euThrPheAsnAlaMetIlePheCysTyrIleGlyGlnIleLeuThrAspGln : 338 !!|||||||||!.!.!.|||.!!||||||||||||:!!||||||:!!!!:||| heThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln 286937 : TCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACag : 286989 vulgar: Lalb_14620 301 338 . KQ414889.1 286878 286989 + 104 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286879 286989 104 + . gene_id 19 ; sequence Lalb_14620 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286879 286989 104 + . alignment_id 19 ; Query Lalb_14620 ; Align 286879 302 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14620 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 294 -> 354 Target range: 258243 -> 258423 295 : ValGluTyrCysLeuLeuThrGluTrpIleAspSerAsnAlaIleAlaIleThrThrT : 314 ||| ::: ... |||||| ! ...::: :::::::::| ValIlePheTyrTyrPheGlnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerT 258244 : gttattttttattattttcaggaATGGTCTACGCaagatattcaaaatttgagttcgt : 258301 315 : yrAlaValTyrMetIleSerLeuThrPheAsnAlaMetIlePheCysTyrIleGlyGl : 333 || !:!! :!:|||||||||:::|||||| ...:::...||||||||||||:! yrPheMetIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGl 258302 : aCTTTATGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGA : 258358 334 : nIleLeuThrAspGlnCysSerGlnIleGlyPheAlaSerTyrGlnValAsnTrpTyr : 352 !|||||||||!!:||| ! :::||| ... ! |||:!! !:: uIleLeuThrGluGlnValProGluIle***LeuIleValThrTyrValHisLysTrp 258359 : AATATTAACAGAACAGGTACCagagatttaattaattgtcaCATATGTACACAAATGG : 258415 353 : AsnLeu : 354 |||||| AsnLeu 258416 : aacttg : 258423 vulgar: Lalb_14620 294 354 . KQ414889.1 258243 258423 + 102 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258244 258423 102 + . gene_id 20 ; sequence Lalb_14620 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 258244 258423 . + . KQ414889.1 exonerate:protein2genome:local exon 258244 258423 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258244 258423 102 + . alignment_id 20 ; Query Lalb_14620 ; Align 258244 295 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14620 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 301 -> 338 Target range: 277371 -> 277482 302 : GluTrpIleAspSerAsnAlaIleAlaIleThrThrTyrAlaValTyrMetIleSerL : 321 |||||| !||||||:!!!.! .!!!!:||||||:!! !:!! !:!:||||||: GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 322 : euThrPheAsnAlaMetIlePheCysTyrIleGlyGlnIleLeuThrAspGln : 338 !: |||||| ... ! ! ||||||||||||:!!|||||||||!!:||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAG : 277482 vulgar: Lalb_14620 301 338 . KQ414889.1 277371 277482 + 101 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277482 101 + . gene_id 21 ; sequence Lalb_14620 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277482 101 + . alignment_id 21 ; Query Lalb_14620 ; Align 277372 302 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1109 Query range: 3 -> 363 Target range: 303133 -> 305937 4 : ValThrValGlnGluGlnAspIleGlyLysProArgAsnProTyrTyrGluLysAspI : 23 :!!:!!:!!!:!|||||| ! ! !!|||||||||||| ! !!|||:!!||||||| LeuSerMetArgGluGlnIleAspArgLysProArgAsnLeuAsnTyrLysLysAspI 303134 : CTCTCTATGCGAGAGCAGATCGATCGGAAACCGCGGAATTTGAATTACAAGAAAGATA : 303191 24 : leValTyrIlePheLysHisSerArgTrpIleLeuAsnSerIleGlyIleTrpProSe : 42 ||||||||:!! |||||||||!:!|||||||||!!.|||:!!||||||||||||:! leValTyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTrpProAl 303192 : TCGTTTACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTGGCCAGC : 303248 43 : rPheLeuLysAsnAsnAsnGlnPheGlnGlnAsnPheSerValGlyLeuCysAsnIle : 61 ! ! ||| ! .!.!.! !|||! !! !!!..!!!!!:!!|||||| !!|||:!: aValLeuAspGluThrAlaGlyPheLeuProLysIleThrIleGlyLeuSerAsnLeu 303249 : CGTGTTGGACGAAACCGCAGGATTCCTACCAAAAATCACCATTGGACTCAGTAATTTG : 303305 62 : ValLeuLeuPheAlaIleLeuProPheThrLeuTyrLeuAlaValGluGluLysAsnL : 81 ||||||||||||.!!:!::!!|||! !! !|||:!!:!! ! !!|||:!!|||:!! ValLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnLysAspT 303306 : GTTCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAAAGGATA : 303365 82 : euMetIleArgValLysLeuPheGlyPheLeuSerPheCysTrpIleCysLeuLeuLy : 100 !!!:||||||:!!||||||||||||.!.||||||||||||! !|||! |||:!!|| hrIleIleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLeuMetLy 303366 : CGATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTTGATGAA : 303422 101 : sTyrTrpValLeuIleAlaCysLysProAsnLeuLysAsnCysIleGluTyrValGln : 119 |||||||!.!||| !.!! ! ||||||!..:!!|||.!.||||||||| ! |||||| sTyrTrpAlaLeuAlaThrArgLysProArgIleLysGluCysIleGluGluValGln 303423 : GTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAGGTGCAA : 303479 120 : HisAspTrpArgGlu >>>> Target Intron 1 >>>> ValGluGlnArgGl : 129 !||||||!:!||| 938 bp ||||||...! !.. SerAspTrpLysGlu++ ++ValGluSerLeuAr 303480 : AGTGATTGGAAAGAGgt.........................agGTGGAATCTCTCAG : 304447 130 : uAspArgGluValMetLeuLysTyrGlyAsnValGlyArgAsnLeuThrLeuLeuCys : 148 !|||||||||:!!|||||||||||||||.!.:!!|||||||||||||||:!!:!!||| gAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIleCys 304448 : AGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAATCTGC : 304504 149 : ValValPheMetSerSerGlyGlyPheMetTyrHisThrIleAlaGlnTyrAlaIleG : 168 !.!:!!||||||! !!!!|||||| !!!:|||||||||:!! !|||!:!|||! !| AlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheAlaThrG 304505 : GCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCGACCG : 304564 169 : lySerHisValAsnGluGlnAsnArgThrIleLysProLeuValTyrProThrTyrSe : 187 ||!!!:!!|||:!!||| ! |||||||||||||||||||||||||||||||||||||| lyThrTyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProThrTyrSe 304565 : GAACGTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACCTACAG : 304621 188 : rArgLeuPheAspProGlnProArgProPheTyrGluLeuValTyrValIleHisSer : 206 | !||||||||| !||| !!!!!|||.!!||||||||||||||| !!:!!|||!!! rAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheValHisCys 304622 : TGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCATTGC : 304678 207 : LeuAsnGlyTyrIleLeuSerAlaIleThrMetGlyAlaCysGlyLeuAlaAlaLeuP : 226 :!! !||||||:!!:!!! !:!!|||||| ||||||||||||||||||||||||| MetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuP 304679 : ATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTT : 304738 227 : heAlaThrHisIleCysGlyGlnIleAspIleMetIleLeuArgLeuGlnAsnLeuTh : 245 ||||||||||| !||||||||||||||||||:!:!!:! !|||||| :!!|||.. heAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAspLeuVa 304739 : TCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGATCTTGT : 304795 246 : rGlnLeuGlyAlaAsnThrAsnLeuHisProLysLeu >>>> Target Intron : 258 !.!. ! !! !::::!!:!!||| !! !::!||| 267 bp lAsnSerLysGluSerSerAspLeuAspLysArgLeu-+ 304796 : CAACAGCAAAGAATCATCTGATTTAGATAAACGATTAat................... : 304836 259 : 2 >>>> AspTrpGluValAsnAsnThrIleSerLeuIleThrTyrThrThrLeuLe : 274 ||||||||| !!:!||||||:!!||||||! !|||||||||..!||||| ++AspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValLeuLe 304837 : ......agGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGTTACT : 305149 275 : uLeuSerLeuMetPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuValGlu : 293 |:!!|||:!!! ||||||||||||||||||||||||||||||!!::!!|||:!!||| uIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMetGlu 305150 : GATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTATGGAA : 305206 294 : Lys >>>> Target Intron 3 >>>> ThrGlyAsnValGlySerLeuCysPh : 303 ||| 413 bp !:!.!!!:!||||||! !! !||||| Lys++ ++SerSerSerValGlyLeuSerCysPh 305207 : AAGgt.........................agAGCAGTAGCGTTGGATTATCCTGTTT : 305649 304 : eMetIleAspTrpTyrLysPheProValGluThrMetArgSerLeuIleLeuIleIle : 322 |||||||..!|||||| ! !!.|||..!:!!|||!!:!.!.!!||||||||||||||| eMetIleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleLeuIleIle 305650 : TATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTTTAATCATT : 305706 323 : AlaIleSerAsnAsnProAlaLysIleThrAlaGlyHisIleValAspLeuAsnLeuA : 342 |||!!:|||!:!|||||||||||||||!:!|||||| ! :!!|||||||||::!|||: AlaMetSerSerAsnProAlaLysIleSerAlaGlyLysValValAspLeuSerLeuS 305707 : GCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTATCTTTAT : 305766 343 : laThrPheGlyGly >>>> Target Intron 4 >>>> IleLeuLysThrSer : 351 !!|||||||||..! 106 bp :!!|||||||||||| erThrPheGlyAsn++ ++ValLeuLysThrSer 305767 : CCACATTTGGAAACgt.........................agGTTCTGAAAACGTCA : 305899 352 : LeuAlaTyrLeuSerPheLeuArgThrSerValMet : 363 |||||||||||||||||||||||||||!!!|||!!: LeuAlaTyrLeuSerPheLeuArgThrThrValIle 305900 : TTAGCGTATTTAAGTTTCCTTCGGACTACCGTTATA : 305937 vulgar: Lalb_14622 3 363 . KQ414889.1 303133 305937 + 1109 M 121 363 5 0 2 I 0 934 3 0 2 M 133 399 5 0 2 I 0 263 3 0 2 M 37 111 5 0 2 I 0 409 3 0 2 M 52 156 5 0 2 I 0 102 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303134 305937 1109 + . gene_id 1 ; sequence Lalb_14622 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303134 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303134 303496 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304833 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304833 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 304834 304835 . + . intron_id 2 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 304834 305100 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 1 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305780 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305780 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305781 305782 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305781 305886 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 305885 305886 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305887 305937 . + . KQ414889.1 exonerate:protein2genome:local exon 305887 305937 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303134 305937 1109 + . alignment_id 1 ; Query Lalb_14622 ; Align 303134 4 363 ; Align 304435 125 399 ; Align 305101 258 111 ; Align 305625 295 156 ; Align 305887 347 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 464 Query range: 15 -> 350 Target range: 208185 -> 211941 16 : AsnProTyrTyrGluLysAspIleValTyrIlePheLysHisSerArgTrpIleLeuA : 35 ||| ! !!|||:!!!!.|||:!: !!:!! ! !!:::! !:! !|||! |||! AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 36 : snSerIleGlyIleTrpProSerPheLeuLysAsnAsn<-><->AsnGlnPheGlnGl : 52 !.! !|||||| !||||||!!!! !:!! ! ..!::! .!..!. !|||!! ysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHi 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCA : 208300 53 : nAsnPheSerValGlyLeuCysAsnIleValLeuLeuPheAlaIleLeuProPheThr : 71 .! !.!!! ! !! !||| !!:!! !:!!||| !||| !:!::!!||| ! ! sIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGly 208301 : TATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGC : 208357 72 : LeuTyrLeuAlaValGluGluLysAsnLeuMetIleArgValLysLeuPheGlyPheL : 91 :!!!:! ! !:!!! !! :!!:!!!!! !!:!:!!|||:!!! !.!! !| MetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaL 208358 : ATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTC : 208417 92 : euSerPheCysTrpIleCysLeuLeuLysTyrTrpValLeuIleAlaCysLysProAs : 110 ||||||||! ! !!!:...!!! !|||||| !:!!:!!! !!.! !!:!! !:! euSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAs 208418 : TGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGA : 208474 111 : nLeuLysAsnCysIleGluTyrValGlnHisAspTrpArgGluValGluGlnArgGlu : 129 !:!!::!!!.|||:!!|||||||||:!! !|||||||||.!.||||||!!...!||| pIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGlu 208475 : CATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAG : 208531 130 : AspArgGluValMetLeuLysTyrGlyAsnValGlyArgAsnLeuThrLeuLeuCysV : 149 ||||||:!!:!!|||||| ! !!!.!!:! !!!.!|||!!.|||! !:!!:!!|||! AspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysG 208532 : GACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCG : 208591 150 : alValPheMetSerSerGlyGlyPheMetTyrHisThrIleAlaGlnTyrAlaIleGl : 168 !!.!||||||! !.!!||| ......|||::: ! ! !! ! !.!! !! lyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAs 208592 : GAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGA : 208648 169 : ySerHisValAsnGlu<->GlnAsnArgThrIleLysProLeuValTyrProThrTyr : 186 !!.! !|||.!.||| ||| !||| !!:! !||||||||||||..! ! pLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValPro 208649 : CAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCT : 208705 187 : SerArgLeuPheAspProGlnProArgProPheTyrGluLeuValTyrValIleHisS : 206 !.! !:!!.!.||| !!:! !!!!||| ! !!|||:!! !!|||..!:!!!!.! LysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnL 208706 : AAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAAT : 208765 207 : erLeuAsnGlyTyrIleLeuSerAlaIleThrMetGlyAlaCysGlyLeuAlaAlaLe : 225 !|||:::|||!:!:!! ! ! !||||||:!:||||||||||||||||||||||| euLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLe 208766 : TGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCT : 208822 226 : uPheAlaThrHisIleCysGlyGlnIleAspIleMetIleLeuArgLeuGlnAsnLeu : 244 |.!!|||! !||| |||||||||:!:.!.|||:!!!!:! ! !!:!!:!!!!.||| uLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeu 208823 : GCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTG : 208879 245 : ThrGlnLeuGlyAlaAsnThrAsnLeuHisProLysLeu{As} >>>> Target I : 258 ..!.!. ! !!! !:!! !.!. !:!! ! ! ! !{ } 1743 ValAspGlyArgGluAspGluGluLysAsnLeuAspGln{Ar}++ 208880 : GTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAG{AG}gt............. : 208925 259 : ntron 1 >>>> {p}TrpGluValAsnAsnThrIleSerLeuIleThrTyrThrTh : 272 bp { }|||!!: !!!.:!! !!|||||| !:!:||||||! !.. --{g}TrpAspSerLysAspProIleSerSerLeuThrTyrIleVa 208926 : ............ga{A}TGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGT : 210706 273 : rLeuLeuLeuSerLeuMetPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeu : 291 !|||||| !|||:!!! !|||||||||||||||!!!||||||||||||!!::!!||| lLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeu 210707 : ACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTG : 210763 292 : ValGluLys >>>> Target Intron 2 >>>> ThrGlyAsnValGlySerLe : 301 !.!|||:!: 999 bp |||! !!!.||||||..! AlaGluGln++ ++ThrValLysValGlyGluLy 210764 : GCTGAACAggt.........................agACAGTAAAAGTTGGAGAAAA : 211792 302 : uCysPheMetIleAspTrpTyrLysPheProValGluThrMetArgSerLeuIleLeu : 320 !! !!:!|||||||||||||||::!.!.|||! !:!!! ! ! !:!! !||| sSerTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValValProLeu 211793 : GTCTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTG : 211849 321 : IleIleAlaIleSerAsnAsnProAlaLysIleThrAlaGlyHisIleValAspLeuA : 340 !!:|||:!!!!:|||:!!::: !!.!!|||||||||||||||:!!:!!:!!! !|||: MetIleSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleValLeuS 211850 : ATGATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTTCTTT : 211909 341 : snLeuAlaThrPheGlyGlyIleLeuLysThr : 350 :::!!::!!:!||||||! !:!! ||| erIleSerSerPheGlyAspValSerValThr 211910 : CAATCAGTAGTTTCGGTGACGTAAGtgttaca : 211941 vulgar: Lalb_14622 15 350 . KQ414889.1 208185 211941 + 464 M 32 96 G 0 6 M 126 378 G 0 3 M 84 252 S 0 2 5 0 2 I 0 1739 3 0 2 S 1 1 M 36 108 5 0 2 I 0 995 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 211941 464 + . gene_id 2 ; sequence Lalb_14622 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208186 208922 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208922 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208923 208924 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208923 210665 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210664 210665 . + . intron_id 0 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local cds 210666 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210666 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211941 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211941 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208186 211941 464 + . alignment_id 2 ; Query Lalb_14622 ; Align 208186 16 96 ; Align 208288 48 378 ; Align 208669 174 252 ; Align 210667 259 108 ; Align 211774 295 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 385 Query range: 18 -> 347 Target range: 226912 -> 230406 19 : TyrGluLysAspIleValTyrIlePheLysHisSerArgTrpIleLeuAsnSerIleG : 38 |||:!!:!! !!:!: ! ! !.!.:!! !:!||||||:!:|||!!. !!:!!| TyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuG 226913 : TATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCG : 226970 39 : lyIleTrpProSerPheLeuLysAsnAsnAsnGlnPheGln<->GlnAsnPheSerVa : 56 ||||||||||||||! ! !|||!:!::!... ! ::! ::!!::! !:! lyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMe 226971 : GTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGAT : 227027 57 : lGly<->LeuCysAsnIleValLeuLeuPheAlaIleLeuProPheThrLeuTyrLeu : 74 !||| |||||| !! :!!:!! !|||! !:!::!! !! ! !||||||:!! tGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrVal 227028 : GGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTG : 227084 75 : AlaValGluGluLysAsnLeuMetIleArgValLysLeuPheGlyPheLeuSerPheC : 94 !.!:!!|||! !|||..! ! ! !! !:!!|||:!!.!!||| :!!||||||! ValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPheP 227085 : GTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCT : 227144 95 : ysTrpIleCysLeuLeuLysTyrTrpValLeuIleAlaCysLysProAsnLeuLysAs : 113 ! !!!:! !||||||||||||! :!!|||! ! !:!! !:!!:!! .! heAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGl 227145 : TCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGA : 227201 114 : nCysIleGluTyrValGlnHisAspTrpArgGluValGluGlnArgGluAspArgGlu : 132 .|||:!!||| :!!:!! ||||||!:!.!.:!!..! ! ! !|||||||||.!. uCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsn 227202 : GTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAAC : 227258 133 : ValMetLeuLysTyrGlyAsnValGlyArgAsnLeuThrLeuLeuCysValValPheM : 152 ||||||:!!! !|||!.! !! !||||||!!.|||! ! !:!!|||..! !!|||: ValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheV 227259 : GTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCG : 227318 153 : etSerSerGlyGlyPheMetTyrHisThrIleAlaGlnTyrAlaIleGlySerHisVa : 171 !:! !|||... ...::::::! !:!!!.!! ! ! !|||||| !!. alPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerValAl 227319 : TCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGC : 227375 172 : lAsnGluGln<->AsnArgThrIleLysProLeuValTyrProThrTyrSerArgLeu : 189 !!..|||.!. |||!.!!:! !! ! !:!! !!:!||| ! !.!! !:!! aThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIleIle 227376 : AACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATC : 227432 190 : PheAspProGlnProArgProPheTyrGluLeuValTyrValIleHisSerLeuAsnG : 209 !||| !!:: !!!!|||||| !!|||:!! !!!:! !:!!!!.! !:!!!..| AlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValThrG 227433 : GCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAG : 227492 210 : lyTyrIleLeuSerAlaIleThrMetGlyAlaCysGlyLeuAlaAlaLeuPheAlaTh : 228 || !:!:||| !!.!:!!||| !.!||||||.!!:!!|||||||||.!!|||.. lyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaVa 227493 : GTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGT : 227549 229 : rHisIleCysGlyGlnIleAspIleMetIleLeuArgLeuGlnAsnLeuThrGlnLeu : 247 !||| !|||||||||!!:!!::!::!!:!:! ! !!||| !:!!|||! !.!. ! lHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGly 227550 : TCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGC : 227606 248 : GlyAlaAsnThrAsn<-><->LeuHisProLysLeuAspTrpGluValAsnAsnThrI : 265 !!|||:!!! !!:! ||| !! !!:!:!!! ! ! |||!.!:!! !: ArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValThrHisHisV 227607 : AGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACCACG : 227666 266 : leSerLeuIleThrTyrThrThrLeuLeuLeuSerLeuMet{P} >>>> Target : 279 !! !!:!!:!:! !! !..!|||! !:!!! !! !||| {.} 60 alArgIleLeuLysCysValThrCysIleTyrLeuLeuTyr{L}++ 227667 : TTCGAATATTGAAGTGTGTAACGTGTATCTATTTGTTGTAT{C}gt............ : 227711 280 : Intron 1 >>>> {he}AsnIlePheIleLeuCysTyrIleGlyAspLeuLeuVal : 292 3 bp {!!}||||||||||||...||||||||||||!!::!!:!!!.! --{eu}AsnIlePheIlePheCysTyrIleGlyGluIleValAla 227712 : .............ct{tc}aatattttcatattttgttaTATAGGAGAAATTGTTGCC : 228350 293 : GluLys >>>> Target Intron 2 >>>> ThrGlyAsnValGlySerLeuCy : 302 ||| ! 1889 bp ! !!!!.||||||..! !! GluHis++ ++CysArgLysValGlyGluLysSe 228351 : GAACACgt.........................agTGCAGAAAAGTCGGCGAAAAGTC : 230269 303 : sPheMetIleAspTrpTyrLysPheProValGluThrMetArgSerLeuIleLeuIle : 321 !:!||||||!!:||||||::!!!. !!! !.!.! !! !! !!!!! !||||||||| rTyrMetIleGluTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIle 230270 : GTACATGATCGAATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATC : 230326 322 : IleAlaIleSerAsnAsnProAlaLysIleThrAlaGlyHisIleValAspLeuAsnL : 341 ||||||!!:|||||| ! !!.!!|||.!!|||||||||:!!!!:|||!!:|||::!: IleAlaMetSerAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerV 230327 : ATCGCCATGTCCAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCG : 230386 342 : euAlaThrPheGlyGlyIle : 347 !! !||||||.!!! !:!! alAsnThrPheSerAspVal 230387 : TAAACACTTTCAGCGACGTA : 230406 vulgar: Lalb_14622 18 347 . KQ414889.1 226912 230406 + 385 M 33 99 G 0 3 M 6 18 G 0 3 M 117 351 G 0 3 M 78 234 G 0 6 M 26 78 S 0 1 5 0 2 I 0 599 3 0 2 S 1 2 M 15 45 5 0 2 I 0 1885 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226913 230406 385 + . gene_id 3 ; sequence Lalb_14622 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226913 227708 . + . KQ414889.1 exonerate:protein2genome:local exon 226913 227708 . + . insertions 15 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 227709 227710 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227709 228311 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228310 228311 . + . intron_id 0 ; splice_site "ct" KQ414889.1 exonerate:protein2genome:local cds 228312 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228312 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230406 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230406 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226913 230406 385 + . alignment_id 3 ; Query Lalb_14622 ; Align 226913 19 99 ; Align 227015 52 18 ; Align 227036 58 351 ; Align 227390 175 234 ; Align 227630 253 78 ; Align 228314 280 45 ; Align 230248 295 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 358 Query range: 24 -> 347 Target range: 256652 -> 258624 25 : TyrIlePheLysHisSerArgTrpIleLeuAsnSerIleGlyIleTrpProSerPheL : 44 |||! !.!!:!! !:!||||||.!!|||!!. !!|||||| !|||||| !! ! TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProPro---S 256653 : TACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCC---T : 256707 45 : euLysAsnAsnAsnGlnPheGlnGlnAsnPheSerValGlyLeu<-><-><->CysAs : 60 !..!::!!.!!.. .!!:!!!:!||| !!|||:!!! !||| ||| ! erSerSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTy 256708 : CGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTA : 256764 61 : nIleValLeuLeuPheAlaIleLeuProPheThrLeuTyrLeuAlaValGluGluLys : 79 ! ! !:!!||||||.!!:!::!!|||! ! !|||:!!:!! !:!!!!:!!: ! rGlySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAsp 256765 : TGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGAC : 256821 80 : AsnLeuMetIleArgValLysLeuPheGlyPheLeuSerPheCysTrpIleCysLeuL : 99 !:!!!! ::::::|||||| |||||| !:!!||| !!! ||| !!! ! SerPheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysA 256822 : AGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTG : 256881 100 : euLysTyrTrpValLeuIleAlaCysLysProAsnLeuLysAsnCysIleGluTyrVa : 118 !!!.||| !:!!|||:!: ! ! !:!!:!!::: !!|||:!!|||:!!:! laAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIl 256882 : CCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATAT : 256938 119 : lGlnHisAspTrpArgGluValGluGlnArgGluAspArgGluValMetLeuLysTyr : 137 !:!! ||||||||| !|||..!::!..!:!!|||!:!:!!||||||:!!||| !! eGluThrAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsn 256939 : AGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAAC : 256995 138 : GlyAsnValGlyArgAsnLeuThrLeuLeuCysValValPheMetSerSerGlyGlyP : 157 !.!!.. !!|||||| !!:!!.!! !!!!|||!.!!.!.!!|||..!|||||| | AlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValP 256996 : GCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttt : 257055 158 : heMetTyrHis<->ThrIleAlaGlnTyrAlaIleGlySerHisValAsnGluGlnAs : 175 || ::: :!! |||! ! !!.!! !! !||||||....!.:!!!. heCysPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluTh 257056 : tctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAAC : 257112 176 : nArgThrIleLysProLeuValTyrProThrTyrSerArgLeuPheAspProGlnPro : 194 .! !! !:!:::! !||| ! ! !!..!|||!.!!:!|||!!.:!! !.!.! ! rThrIleValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGln 257113 : AACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAG : 257169 195 : ArgProPheTyrGluLeuValTyrValIleHisSerLeuAsnGlyTyrIleLeuSerA : 214 !!!||| !!|||:!!||| ! !!!!:!!.!!!! !:::..! !||| !!!!. SerProThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrT 257170 : AGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTA : 257229 215 : laIleThrMetGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisIleCysGlyGl : 233 !!! !|||:!:.!! !! !.!!|||||||||:!!|||||||||||| ! !||||| hrSerThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGl 257230 : CTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCA : 257286 234 : nIleAspIleMetIleLeuArgLeuGlnAsnLeuThrGlnLeu >>>> Target I : 248 |:!: !:!::!:!!:! ! !!:!! !.!.!!!..!.!. ! 904 nLeuThrValLeuMetSerTrpIleThrGluPheValAsnGlu-- 257287 : GTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGtc............. : 257333 249 : ntron 1 >>>> GlyAlaAsnThrAsnLeuHisProLysLeuAspTrpGluValAs : 262 bp .!. :::... ...::: :::|||.....!.. +-SerTyrSerValIlePheTyrTyrPheGlnGluTrpSerThrGl 257334 : ............acAGctattctgttattttttattattttcaggaATGGTCTACGCa : 258277 263 : nAsnThrIleSerLeuIleThrTyrThrThrLeuLeuLeuSerLeuMetPheAsnIle : 281 .::: :::||| :::||| !! !:!!|||:!!|||||| ||||||||| nAspIleGlnAsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIle 258278 : agatattcaaaatttgagttcgtaCTTTATGATACTCATATcactttctttcaatatt : 258334 282 : PheIleLeuCysTyrIleGlyAspLeuLeuValGluLys >>>> Target Intro : 295 |||::::::||||||||||||!!::!!|||..!|||:!! 90 bp PheValIleCysTyrIleGlyGluIleLeuThrGluGln++ 258335 : tttgtaatatgttACATAGGTGAAATATTAACAGAACAGgt................. : 258378 296 : n 2 >>>> ThrGlyAsnValGlySerLeuCysPheMetIleAspTrpTyrLysPhe : 310 ! !!!.||||||..!:!! !!:!|||! !||||||||| ! .!. ++CysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeu 258379 : ........agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTA : 258511 311 : ProValGluThrMetArgSerLeuIleLeuIleIleAlaIleSerAsnAsnProAlaL : 330 |||! !:!!! !!!:! !..!|||||||||:!!|||||| !|||!:! !!.!: ProAspLysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValG 258512 : CCTGACAAAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTC : 258571 331 : ysIleThrAlaGlyHisIleValAspLeuAsnLeuAlaThrPheGlyGlyIle : 347 !!|||||||||||| ... ::!::!:!! !||||||.!!! !:!: lnIleThrAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAspVal 258572 : AAATCACCGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATGTG : 258624 vulgar: Lalb_14622 24 347 . KQ414889.1 256652 258624 + 358 M 18 54 G 1 0 M 15 45 G 0 9 M 102 306 G 0 3 M 87 261 5 0 2 I 0 900 3 0 2 M 47 141 5 0 2 I 0 86 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256653 258624 358 + . gene_id 4 ; sequence Lalb_14622 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256653 257330 . + . KQ414889.1 exonerate:protein2genome:local exon 256653 257330 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 257331 257332 . + . intron_id 1 ; splice_site "TC" KQ414889.1 exonerate:protein2genome:local intron 257331 258234 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258233 258234 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 258235 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258235 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256653 258624 358 + . alignment_id 4 ; Query Lalb_14622 ; Align 256653 25 54 ; Align 256707 44 45 ; Align 256761 59 306 ; Align 257070 161 261 ; Align 258235 248 141 ; Align 258466 295 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 339 Query range: 18 -> 244 Target range: 221360 -> 222047 19 : TyrGluLysAspIleValTyrIlePheLysHisSerArgTrpIleLeuAsnSerIleG : 38 |||:!!! !:!!:!: !! ! ! ! :!! |||||||||||||||!!. !!|||| TyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleG 221361 : TACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCG : 221418 39 : lyIleTrpProSerPhe<-><->LeuLysAsnAsnAsnGlnPheGlnGlnAsnPheSe : 55 ||:!!||||||!:!! :!!...!.. .!.::!!:!! ! .!.! lyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLeuIl 221419 : GTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCTGAT : 221475 56 : rValGlyLeuCysAsnIleValLeuLeuPheAlaIleLeuProPheThrLeuTyrLeu : 74 ! !! !:!!||| !!! !:!!:!! !||| !:!::!!|||! !!:!||||||:!! eAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyrVal 221476 : AAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTG : 221532 75 : AlaValGluGluLysAsnLeuMetIleArgValLysLeuPheGlyPheLeuSerPheC : 94 !:!!|||! !:!!:!!:!! ! !|||:!!||||||!!.||| |||||||||| IleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheC 221533 : ATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCT : 221592 95 : ysTrpIleCysLeuLeuLysTyrTrpValLeuIleAlaCysLysProAsnLeuLysAs : 113 || !!!:...!!!||||||||| :!!|||||| !! !:!! !:!!:!!:::.! ysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGl 221593 : GCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGA : 221649 114 : nCysIleGluTyrValGlnHisAspTrpArgGluValGluGlnArgGluAspArgGlu : 132 .||||||||| !:!!:!! ||||||!:!.!.:!! ! !:!!|||!:!!!: uCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLysAsp 221650 : GTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAGGAT : 221706 133 : ValMetLeuLysTyrGlyAsnValGlyArgAsnLeuThrLeuLeuCysValValPheM : 152 :!!|||:!!:!! !!!.!! ! !!||||||...|||! !:!!:!!|||..! !!|||| IleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheM 221707 : ATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCA : 221766 153 : etSerSerGlyGlyPheMetTyrHisThrIleAlaGlnTyrAlaIleGlySer<->Hi : 170 ||! !|||||| ...|||::: ! ! !! !!:!::!:!:|||!.! ! etTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIlePr 221767 : TGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCC : 221823 171 : sValAsnGluGlnAsnArgThrIleLysProLeuValTyrProThrTyrSerArgLeu : 189 !!.!.!.!!: ||| |||... |||:!!|||!:!||| !! !!! !:!! oAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPheIle 221824 : TGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATC : 221880 190 : PheAspProGlnProArgProPheTyrGluLeuValTyrValIleHisSerLeuAsnG : 209 !!||| !!!:! !!!!||| ! !!|||:!!:!!!:! !:!!!!.! !:!! | ValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaG 221881 : GTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGG : 221940 210 : lyTyrIleLeuSerAlaIleThrMetGlyAlaCysGlyLeuAlaAlaLeuPheAlaTh : 228 || !:!::!! !::!|||||| !!.!||||||.!!|||!.!|||:!!||||||.. lyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaVa 221941 : GTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGT : 221997 229 : rHisIleCysGlyGlnIleAspIleMetIleLeuArgLeuGlnAsnLeu : 244 !||| !|||||||||!!:.!.:!::!!!!: ! !!|||:!!:!!||| lHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeu 221998 : GCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTG : 222047 vulgar: Lalb_14622 18 244 . KQ414889.1 221360 222047 + 339 M 25 75 G 0 6 M 126 378 G 0 3 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221361 222047 339 + . gene_id 5 ; sequence Lalb_14622 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221361 222047 . + . KQ414889.1 exonerate:protein2genome:local exon 221361 222047 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221361 222047 339 + . alignment_id 5 ; Query Lalb_14622 ; Align 221361 19 75 ; Align 221442 44 378 ; Align 221823 170 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 338 Query range: 18 -> 294 Target range: 212854 -> 214740 19 : TyrGluLysAspIleValTyrIlePheLysHisSerArgTrpIleLeuAsnSerIleG : 38 ||||||||| ::: ... ! !:!||||||:!!|||!!. !!! | TyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrG 212855 : TACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGG : 212912 39 : lyIleTrpPro<-><->SerPheLeuLysAsnAsnAsnGlnPheGlnGlnAsnPheSe : 55 ||:!:|||||| |||!:!:!!..! ! !.!.:!! ! ...!!. lyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIleAlaArgLeuVa 212913 : GTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGT : 212969 56 : rValGlyLeuCysAsnIleValLeuLeuPheAlaIleLeuProPheThrLeuTyrLeu : 74 ! ! !:!!||| !! !:!!:!! !!:! !:!!:!!|||! !!:!||||||:!! lAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrVal 212970 : CAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTG : 213026 75 : AlaValGluGluLysAsnLeuMetIleArgValLysLeuPheGlyPheLeuSerPheC : 94 !:!!!!:! !:::|||:::... ...:!!:!!|||||||||.!!!!!:!!|||| PheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheC 213027 : TTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTT : 213086 95 : ysTrpIleCysLeuLeuLysTyrTrpValLeuIleAlaCysLysProAsnLeuLysAs : 113 || ! !...|||! !|||||| !|||||| ! ! !:!!:!!:::!. ysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgTh 213087 : GCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTAC : 213143 114 : nCysIleGluTyrValGlnHisAspTrpArgGluValGluGlnArgGluAspArgGlu : 132 .|||:!!|||:!!:!!:!!:!!||||||!:!.!.:!! !!!...!||||||!:!||| rCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGlu 213144 : GTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAA : 213200 133 : ValMetLeuLysTyrGlyAsnValGlyArgAsnLeuThrLeuLeuCysValValPheM : 152 :!!||| ! ! !!!.!!:! !!|||!:!!..:!!..! !:!!|||!.! !!|||| IleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPhePheM 213201 : ATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCA : 213260 153 : etSerSerGlyGlyPheMetTyrHisThrIleAlaGlnTyrAlaIleGlySerHisVa : 171 ||! !!!!||| ! .!.||| ! !:!!!.!! ! !::! ! !!.! || etTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLysMetVa 213261 : TGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGT : 213317 172 : lAsnGluGln<->AsnArgThrIleLysProLeuValTyrProThrTyrSerArgLeu : 189 | |||.!. ||| !|||.!!!:!! !:!!||| !|||..!! !!! !:!! lAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSerArgPheIle 213318 : AGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATC : 213374 190 : PheAspProGlnProArgProPheTyrGluLeuValTyrValIleHisSerLeuAsnG : 209 !!||| !!:! !!!!||| ! !!|||:!! !!!:!:!!|||!!.! !:!! !| ValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleIleAlaG 213375 : GTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTG : 213434 210 : lyTyrIleLeuSerAlaIleThrMetGlyAlaCysGlyLeuAlaAlaLeuPheAlaTh : 228 || :!::!! !||||||.!!:!!! !||||||.!!|||||||||:!!||||||.. lyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPheAlaVa 213435 : GAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGT : 213491 229 : rHisIleCysGlyGlnIleAspIleMetIleLeuArgLeuGlnAsnLeuThr<-><-> : 246 !||| !|||||||||!!:! !|||:!!!!: ! !!|||:!!:!!|||! ! lHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGly 213492 : TCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGT : 213548 247 : GlnLeuGlyAlaAsnThrAsnLeuHisProLysLeuAspTrpGluValAsnAsnThrI : 265 ::! !! ! !!:!! !|||:!! !! !!:!:!!! ||||||.!. !: ArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleValAsnGlnHisV 213549 : AGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATG : 213608 266 : leSerLeuIleThrTyrThrThrLeuLeu >>>> Target Intron 1 >>>> : 275 !: !!:!!:!:! !!::..! !|||! ! 1043 bp alArgIleLeuLysTrpValGluLeuTrp++ +- 213609 : TGCGGATACTGAAGTGGGTGGAATTGTGGgt.........................at : 214679 276 : LeuSerLeuMetPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuValGluL : 294 :!!|||||| |||||||||||||||...||||||||||||!!:|||:!! !|||: IleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValSerGluG 214680 : ATCTCTCtcactttcaatattttcatattttgttaCATAGGCGAGCTTGTGTCTGAAC : 214738 295 : ys : 294 !! ln 214739 : AG : 214740 vulgar: Lalb_14622 18 294 . KQ414889.1 212854 214740 + 338 M 23 69 G 0 6 M 133 399 G 0 3 M 71 213 G 0 6 M 29 87 5 0 2 I 0 1039 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212855 214740 338 + . gene_id 6 ; sequence Lalb_14622 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212855 213637 . + . KQ414889.1 exonerate:protein2genome:local exon 212855 213637 . + . insertions 15 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 213638 213639 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213638 214680 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214679 214680 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 214681 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214681 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212855 214740 338 + . alignment_id 6 ; Query Lalb_14622 ; Align 212855 19 69 ; Align 212930 42 399 ; Align 213332 175 213 ; Align 213551 246 87 ; Align 214681 275 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 321 Query range: 20 -> 297 Target range: 232447 -> 234923 21 : LysAspIleValTyrIlePheLysHisSerArgTrpIleLeuAsnSerIleGlyIleT : 40 ::!||| !! !|||! !.!!:!! !:!||||||.!!|||!.. !!!!:||| !| ArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaT 232448 : CGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCAT : 232505 41 : rpProSerPheLeuLysAsnAsn<-><->AsnGlnPheGlnGlnAsnPheSerValGl : 57 ||||| !! !! !:!!!.!::: .!.|||.!.! !!!..!.! ! ! rpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLe 232506 : GGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACT : 232562 58 : yLeuCysAsnIleValLeuLeuPheAlaIleLeuProPheThrLeuTyrLeuAlaVal : 76 ! !|||:!! !:!!:!!:!!! !:!!|||:!!|||! !! !|||!:!:!! ! !! uThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPhe 232563 : CACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTC : 232619 77 : GluGluLysAsnLeuMetIleArgValLysLeuPheGlyPheLeuSerPheCysTrpI : 96 |||!!:! !!:!||| ! !|||:!!|||! !.!!||| !:!!||| !! ! !! GluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuM 232620 : GAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGA : 232679 97 : leCysLeuLeuLysTyrTrpValLeuIleAlaCysLysProAsnLeuLysAsnCysIl : 115 !: !! !|||!!.|||!! !|||:!:||| ! !:!!:!! !!|||:! etGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysVa 232680 : TGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGT : 232736 116 : eGluTyrValGlnHisAspTrpArgGluValGluGlnArgGluAspArgGluValMet : 134 :||| ! |||:!!!!.|||||||||.!.|||:!!:!!! !! !!|||!!::!!||| lGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMet 232737 : GGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATG : 232793 135 : LeuLysTyrGlyAsnValGlyArgAsnLeuThrLeuLeuCysValValPheMetSerS : 154 |||||| !!!.!!!.:!!||||||::::!!.!!! !:!!..!!.! !!! !||| !! LeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisT 232794 : TTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACA : 232853 155 : erGlyGlyPheMetTyrHisThrIleAlaGlnTyrAlaIleGlySer<->HisValAs : 172 !!|||! ! ! !!.!.! !:!!.!! ! ! !!!:.!!!!! :!!|||.. hrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGl 232854 : CCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGG : 232910 173 : nGluGlnAsnArgThrIleLysProLeuValTyrProThrTyrSerArgLeuPheAsp : 191 ..!.:!!!:! !:!!!!: ! |||||| !! ! !! !|||!!!!:!|||.!.||| yAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAsp 232911 : GAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGAC : 232967 192 : ProGlnProArgProPheTyrGluLeuValTyrValIleHisSerLeuAsnGlyTyrI : 211 !!::! !!!!||| !!|||:!!:!!!:!|||:!!!!.!!!|||::!|||!:!| ThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheI 232968 : ACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCA : 233027 212 : leLeuSerAlaIleThrMetGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisIl : 230 ||:!!!:!:!!:!!|||:!!|||||||||||||||!.!|||:!!.!.|||! !||| leValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAl 233028 : TCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGC : 233084 231 : eCysGlyGlnIleAspIleMetIleLeuArgLeuGlnAsnLeu{Th} >>>> Targ : 245 |||||||||:!::!!:!::!!!!:! !!:!|||.!.:!!|||{..} aCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeu{Va}+- 233085 : GTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTG{GT}gg......... : 233133 246 : et Intron 1 >>>> {r}GlnLeuGlyAlaAsnThrAsnLeuHisProLysLeuA : 258 1636 bp {!}:::...... !|||:!! ! ! ! !! ||| +-{l}GluPheSerArgAsnSerLeuCysLysCysIleLeuT 233134 : ................at{c}gaattttcgCGTAACTCTTTATGCAAATGTATTTTAA : 234804 259 : spTrpGluValAsnAsnThrIleSerLeuIleThrTyrThrThrLeuLeuLeuSerLe : 277 !! :!!! !!!.::: ...||| !:!!|||..!! !:!!! !:!!|||:! hrSerGlnGluLysSerLysGluLysLeuAlaSerTyrValIleValTyrValSerMe 234805 : CTTCTCAGGAAAAgtcgaaggaaaaattagCTTCATACGTCATCGTGTACGTGTCCAT : 234861 278 : uMetPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuValGluLysThrGly : 296 !! |||||||||||||||...||||||||||||!!: !|||..!|||:!!..!||| tThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGlnValGly 234862 : GACATTtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGCAGGTAGGA : 234918 297 : Asn : 297 ::: Ser 234919 : TCA : 234923 vulgar: Lalb_14622 20 297 . KQ414889.1 232447 234923 + 321 M 27 81 G 0 6 M 122 366 G 0 3 M 75 225 S 0 2 5 0 2 I 0 1632 3 0 2 S 1 1 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232448 234923 321 + . gene_id 7 ; sequence Lalb_14622 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232448 233130 . + . KQ414889.1 exonerate:protein2genome:local exon 232448 233130 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 233131 233132 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local intron 233131 234766 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234765 234766 . + . intron_id 0 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local cds 234767 234923 . + . KQ414889.1 exonerate:protein2genome:local exon 234767 234923 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232448 234923 321 + . alignment_id 7 ; Query Lalb_14622 ; Align 232448 21 81 ; Align 232535 48 366 ; Align 232904 170 225 ; Align 234768 246 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 312 Query range: 24 -> 252 Target range: 266637 -> 267330 25 : TyrIlePheLysHisSerArgTrpIleLeuAsnSerIleGlyIleTrpPro<-><->S : 42 |||! !.!.:!! !:!||||||.!!|||!!. !!|||||| !|||||| | TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuS 266638 : TACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGT : 266695 43 : erPheLeuLysAsnAsnAsnGlnPheGlnGlnAsnPheSerValGlyLeuCysAsnIl : 61 ||.!! !...!!. !.!.!:!.!! ... !! !! !:!!! !:!!||| !! erLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCy 266696 : CACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTG : 266752 62 : eValLeuLeuPheAlaIleLeuProPheThrLeuTyrLeuAlaValGluGluLysAsn : 80 ! !:!!||||||.!!:!!:!!|||! ! !!!!:!!|||!.!:!!|||!!::!!!:! sSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSer 266753 : CTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGT : 266809 81 : LeuMetIleArgValLysLeuPheGlyPheLeuSerPheCysTrpIleCysLeuLeuL : 100 :!! ! !:!||||||:!!|||||| !|||||| !!! !:::!! ! !:!!! IleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleA 266810 : ATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTA : 266869 101 : ysTyrTrpValLeuIleAlaCysLysProAsnLeuLysAsnCysIleGluTyrValGl : 119 !.||| ..!|||:!: ! !!!.. !.!.:!!:::..!|||:!!|||:!!:!!|| snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 266870 : ACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCA : 266926 120 : nHisAspTrpArgGluValGluGlnArgGluAspArgGluValMetLeuLysTyrGly : 138 | ||||||||| ||| ::!! !||||||!:!:!!|||||||||||| !!!.! nThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAla 266927 : AACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCG : 266983 139 : AsnValGlyArgAsnLeuThrLeuLeuCysValValPheMetSerSerGlyGlyPheM : 158 !..:!!|||||| !!:!!.!!:!!!!!|||!.!!.!||||||..!!!!|||! !.!! ArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuG 266984 : AGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCG : 267043 159 : etTyrHisThrIleAlaGlnTyrAlaIleGlySer<->HisValAsnGluGlnAsnAr : 176 ||| !..!|||.!! !!:!.!!!!: !!!! .!.|||..!.!.:!!!.!|| lyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrAr 267044 : GCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAG : 267100 177 : gThrIleLysProLeuValTyrProThrTyrSerArgLeuPheAspProGlnProArg : 195 |! !:!! ! ! !||| !! ! !!..!|||!.!!:!:!!.!!! !.!. !!!!! gIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSer 267101 : GATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGC : 267157 196 : ProPheTyrGluLeuValTyrValIleHisSerLeuAsnGlyTyrIleLeuSerAlaI : 215 ||| !!|||:!!||| !||| !!!.! !:!!:::|||!:!|||:!!!:!:!!! ProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerS 267158 : CCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGA : 267217 216 : leThrMetGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisIleCysGlyGlnIl : 234 !..!:!:||||||! !.!!|||||||||:!!||||||.!!||| |||||||||:! erValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLe 267218 : GCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCT : 267274 235 : eAspIleMetIleLeuArgLeuGlnAsnLeuThrGlnLeuGlyAlaAsnThrAsn : 252 :..!:!::!!!!::!! !!:!!:!!.!.!!!..!.!.! !..! !:!!!:!||| uSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsn 267275 : GAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAAT : 267330 vulgar: Lalb_14622 24 252 . KQ414889.1 266637 267330 + 312 M 17 51 G 0 6 M 128 384 G 0 3 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266638 267330 312 + . gene_id 8 ; sequence Lalb_14622 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266638 267330 . + . KQ414889.1 exonerate:protein2genome:local exon 266638 267330 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266638 267330 312 + . alignment_id 8 ; Query Lalb_14622 ; Align 266638 25 51 ; Align 266695 42 384 ; Align 267082 170 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 278 Query range: 24 -> 239 Target range: 274383 -> 275037 25 : TyrIlePheLysHisSerArgTrpIleLeuAsnSerIleGlyIleTrpPro<-><->S : 42 |||! !!!.:!! !:!||||||.!!|||!!. !!|||||| |||||| | TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaS 274384 : TACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCT : 274441 43 : erPheLeuLysAsnAsnAsnGlnPheGlnGlnAsnPheSerValGlyLeuCysAsnIl : 61 || ! !! !!!. !.!.!:!.!!! ..!:!!... ::: |||||| !! erProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCy 274442 : CGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTG : 274498 62 : eValLeuLeuPheAlaIleLeuProPheThrLeuTyrLeuAlaValGluGluLysAsn : 80 ! !!:!!|||! !.!!:!!:!!||| !! !!!!:!!:!! !:!!! !!!::!!!:! sPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGluSer 274499 : CTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGT : 274555 81 : LeuMetIleArgValLysLeuPheGlyPheLeuSerPheCysTrpIleCysLeuLeuL : 100 ||| :!:!:!:!!||||||.!!||| !|||.!! !!! !::||| ! !:!!! LeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleA 274556 : CTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTA : 274615 101 : ysTyrTrpValLeuIleAlaCysLysProAsnLeuLysAsnCysIleGluTyrValGl : 119 !.||| ..!|||:!: ! !!!.. !.!.:!!:::..!|||:!:|||:!!:!!|| snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 274616 : ATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCA : 274672 120 : nHisAspTrpArgGluValGluGlnArgGluAspArgGluValMetLeuLysTyrGly : 138 | ||||||||| ||| ::!! !||||||!:!:!!|||||||||||| !!!.! nThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsnAla 274673 : AACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCG : 274729 139 : AsnValGlyArgAsnLeuThrLeuLeuCysValValPheMetSerSerGlyGlyPheM : 158 !!.:!!|||||| !!:!!.!!:!!!!!|||!.!!.!||||||..!!!!|||! !.!! LysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuC 274730 : AAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCT : 274789 159 : etTyrHisThrIleAlaGlnTyrAlaIleGlySer<->HisValAsnGluGlnAsnAr : 176 ||| !..!|||.!! !!:!.!!!!: !!!! !!.|||....!.:!!!.!|| ysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrAr 274790 : GTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAG : 274846 177 : gThrIleLysProLeuValTyrProThrTyrSerArgLeuPheAspProGlnProArg : 195 ||||:!: ! !||| !! ! !.!!|||!.!!:!:!! !!! !.!. !!!!! gThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThrSer 274847 : AACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGT : 274903 196 : ProPheTyrGluLeuValTyrValIleHisSerLeuAsnGlyTyrIleLeuSerAlaI : 215 ||| !!|||:!!||| !!.! !!.! !:!!:::|||!:!|||:!!!:!:!!! ProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerS 274904 : CCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGA : 274963 216 : leThrMetGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisIleCysGlyGlnIl : 234 !.!!:!:||||||! !.!!|||||||||:!!||||||.!!||| !! !||||||:! erAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLe 274964 : GCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTT : 275020 235 : eAspIleMetIleLeu : 239 :..!:!::!!!!::!! uSerValLeuMetIle 275021 : GAGCGTGCTGATGATA : 275037 vulgar: Lalb_14622 24 239 . KQ414889.1 274383 275037 + 278 M 17 51 G 0 6 M 128 384 G 0 3 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274384 275037 278 + . gene_id 9 ; sequence Lalb_14622 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274384 275037 . + . KQ414889.1 exonerate:protein2genome:local exon 274384 275037 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274384 275037 278 + . alignment_id 9 ; Query Lalb_14622 ; Align 274384 25 51 ; Align 274441 42 384 ; Align 274828 170 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 267 Query range: 24 -> 243 Target range: 236852 -> 237512 25 : TyrIlePheLysHisSerArgTrpIleLeuAsnSerIleGlyIleTrpProSerPheL : 44 |||! !.!!:!! !:!|||||| :!!!!.|||||||||! !||||||..!|||! TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheS 236853 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCT : 236910 45 : euLysAsnAsnAsnGlnPheGlnGlnAsnPheSerValGlyLeuCysAsnIleValLe : 63 !..!||| !.!.::! ! .......!.! ! !! !:!!||| !!! !!.!:! erSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIl 236911 : CGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAAT : 236967 64 : uLeuPheAlaIleLeuProPheThrLeuTyrLeuAlaValGluGluLysAsnLeuMet : 82 !||||||:!!|||:!!|||! !:!!|||:!!||| !:!!|||:!! !!.!!!! eLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyr 236968 : ACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTAC : 237024 83 : IleArgValLysLeuPheGlyPheLeuSerPheCysTrpIleCysLeuLeuLysTyrT : 102 ! !:!||||||:!!.!!|||! |||||| !!! !.!!|||:!!:!!!..||| ThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrT 237025 : ACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACA : 237084 103 : rpValLeuIleAlaCysLysProAsnLeuLysAsnCysIleGluTyrValGlnHisAs : 121 :!!|||:!: ! ! ::: !!.!:!!::::!!! !.!!.!.:!!:!!:!! !|| hrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAs 237085 : CCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGA : 237141 122 : pTrpArgGluValGluGlnArgGluAspArgGluValMetLeuLysTyrGlyAsnVal : 140 ||||||| !..! ::::::||| :::||||||||||||||||||!.!!!. !! pTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPhe 237142 : TTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTT : 237198 141 : GlyArgAsnLeuThrLeuLeuCysValValPheMetSerSerGlyGlyPheMetTyrH : 160 .!!||| !! !.!!:!!! !|||..!:!!|||!!: !.!!||| !.!! ||| SerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrC 237199 : AGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATT : 237258 161 : isThrIle<->AlaGlnTyrAlaIleGlySerHisValAsnGluGlnAsnArgThrIl : 178 !..!!!: |||... !.!!!!:! ! ! |||....!.:!!!.!! !! !:! ysValMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLe 237259 : GTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTT : 237315 179 : eLysProLeuValTyrProThrTyrSerArgLeuPheAspProGlnProArgProPhe : 197 :::: !||| !! |||! !|||!.! !!|||.!! !.!. !!!.! !!.!. uArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMet 237316 : GCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATG : 237372 198 : TyrGluLeuValTyrValIleHisSerLeuAsnGlyTyrIleLeuSerAlaIleThrM : 217 !!!!::!!||| !:!! !!!.! !|||::!|||!:!||| !!:! !! !.!!! AsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaI 237373 : AACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGA : 237432 218 : etGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisIleCysGlyGlnIleAspIl : 236 !:.!!!.! .!!|||.!!::! !.!..!!:!!||| ! !||||||:!:..!:! leSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerVa 237433 : TCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGT : 237489 237 : eMetIleLeuArgLeuGlnAsn : 243 ::!:!!:||| !:!!:!!:!! lValMetLeuSerIleGluAsp 237490 : GGTTATGTTGTCGATCGAAGAT : 237512 vulgar: Lalb_14622 24 243 . KQ414889.1 236852 237512 + 267 M 138 414 G 0 3 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236853 237512 267 + . gene_id 10 ; sequence Lalb_14622 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236853 237512 . + . KQ414889.1 exonerate:protein2genome:local exon 236853 237512 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 236853 237512 267 + . alignment_id 10 ; Query Lalb_14622 ; Align 236853 25 414 ; Align 237270 163 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 251 Query range: 14 -> 245 Target range: 194141 -> 194834 15 : ArgAsnProTyrTyrGluLysAspIleValTyrIlePheLysHisSerArgTrpIleL : 34 |||||| ! !!|||:!! !|||! !! !||| ! !!::! :!!!:! !:!!| ArgAsnValAsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuL 194142 : CGCAACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTC : 194199 35 : euAsnSerIleGlyIleTrpProSerPheLeuLysAsnAsnAsnGlnPheGlnGlnAs : 53 ||!.. !!|||||||||||||||!!! !... !..!:!!::! !!!:!! ! euThrProIleGlyIleTrpProArgGluAspSerLeuArgAspArgValArgLeuPh 194200 : TAACACCGATCGGTATCTGGCCAAGGGAGGATTCTCTTCGCGACAGAGTCCGACTGTT : 194256 54 : nPheSerValGlyLeuCysAsnIleValLeuLeuPheAlaIleLeuProPheThrLeu : 72 ! !..!..!|||:!! ! ! !:!!:!!! !||| !:!::!!||| !..!:!! eAlaGlnThrGlyValValPheAlaLeuMetCysPheLeuLeuValProHisValIle 194257 : CGCTCAAACTGGCGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATC : 194313 73 : TyrLeuAlaValGluGluLysAsnLeuMetIleArgValLysLeuPheGlyPheLeuS : 92 ||| ! ! !!!!: :!!:!!|||! !! !:!!|||:!!.!!!.! ! ! TyrThrTyrPheAspCysGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnV 194314 : TACACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAG : 194373 93 : erPheCysTrpIleCysLeuLeuLysTyrTrpValLeuIleAlaCysLysProAsnLe : 111 !||| !! !:!:...:!!:!!|||!:!|||..!:!!|||!.! !!:! !.!.:! alPheSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnArgLysGluIl 194374 : TGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGAT : 194430 112 : uLysAsnCysIleGluTyrValGlnHisAspTrpArgGluValGluGlnArgGluAsp : 130 !!:! !|||:!: ! ! :!!:!! .!.!::|||!!:|||||| ..!|||||| eArgPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCysGluGluAsp 194431 : CAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGAT : 194487 131 : ArgGluValMetLeuLysTyrGlyAsnValGlyArgAsnLeuThrLeuLeuCysValV : 150 |||:!!|||||| !!!.! !!.!!!.:!!|||||| !!!!||| !|||! !:!!! ArgGlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuG 194488 : CGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGG : 194547 151 : alPheMetSerSerGlyGlyPheMetTyrHisThrIleAlaGlnTyrAlaIleGlySe : 169 !.!! ! !.!!|||!.!!!. !||||||! !||| !! ! ! !!! lyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluAr 194548 : GACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAG : 194604 170 : rHisValAsnGluGlnAsnArgThrIleLysProLeuValTyrProThrTyrSerArg : 188 ! !|||!!.|||.!.|||!!!||| ! !|||||| !||| !!:! !!! ! ! gIleValLysGluAspAsnSerThrGlnIleProLeuProTyrLeuSerAsnTyrVal 194605 : GATTGTCAAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTT : 194661 189 : LeuPheAspProGlnProArgProPheTyrGluLeuValTyrValIleHisSerLeuA : 208 !!!|||! !:!! ! !|||.!!||||||:!!..!!:!||| !!.! !|||! PhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerGlnIleLeuI 194662 : TTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGA : 194721 209 : snGlyTyrIleLeuSerAlaIleThrMetGlyAlaCysGlyLeuAlaAlaLeuPheAl : 227 !.!! !|||:!!! !:!!! !.! ||| !! !.!!|||!.!||| !.!! leSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIl 194722 : TTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTAT : 194778 228 : aThrHisIleCysGlyGlnIleAspIleMetIleLeuArgLeuGlnAsnLeuThr : 245 !! !||| !|||||| !.!!!!::!:! ! ! !|||:!!:!!!.!:!!:!! eMetHisCysCysGlyLeuPheGluValThrSerArgArgMetGluThrIleSer 194779 : TATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGATGGAGACTATTTCT : 194834 vulgar: Lalb_14622 14 245 . KQ414889.1 194141 194834 + 251 M 231 693 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194142 194834 251 + . gene_id 11 ; sequence Lalb_14622 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194142 194834 . + . KQ414889.1 exonerate:protein2genome:local exon 194142 194834 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194142 194834 251 + . alignment_id 11 ; Query Lalb_14622 ; Align 194142 15 693 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 245 Query range: 257 -> 354 Target range: 286878 -> 287243 258 : AspTrpGluValAsnAsnThrIleSerLeuIleThrTyrThrThrLeuLeuLeuSerL : 277 !!:|||||| !!:!.!.||||||.!! !||||||||| !|||||||||:!!|||! GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerP 286879 : GAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTT : 286936 278 : euMetPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuValGluLys >>> : 295 !!! !||||||:!!|||||||||||||||||||||!!::!!||| !|||::: heThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286937 : TCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt... : 286992 296 : > Target Intron 1 >>>> ThrGlyAsnValGlySerLeuCysPheMetIleA : 306 74 bp ! !!!.||||||! !! ! !!:!||||||| ++CysLeuLysValGlyLeuSerThrTyrMetIleA 286993 : ......................agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCG : 287097 307 : spTrpTyrLysPheProValGluThrMetArgSerLeuIleLeuIleIleAlaIleSe : 325 ||||||||:::!!.|||! !:!!||| !:!.!!||||||||||||.!!|||:!:|| spTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSe 287098 : ACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTC : 287154 326 : rAsnAsnProAlaLysIleThrAlaGlyHisIleValAspLeuAsnLeuAlaThrPhe : 344 ||||::! !! !|||:!!||||||||| ! |||:!!||||||::!|||::!!:!||| rAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPhe 287155 : GAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTC : 287211 345 : GlyGlyIleLeuLysThrSerLeuAlaTyr : 354 !!.!!:!: !! ! !!:!|||:!!||| CysSerValSerIleIleAsnLeuSerTyr 287212 : TGCAGCGTGAGTATCATAAATTTATCCTAT : 287243 vulgar: Lalb_14622 257 354 . KQ414889.1 286878 287243 + 245 M 37 111 5 0 2 I 0 70 3 0 2 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286879 287243 245 + . gene_id 12 ; sequence Lalb_14622 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287243 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287243 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286879 287243 245 + . alignment_id 12 ; Query Lalb_14622 ; Align 286879 258 111 ; Align 287064 295 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 242 Query range: 171 -> 294 Target range: 300180 -> 301797 172 : AsnGluGlnAsnArgThrIleLysProLeuValTyrProThrTyrSerArgLeuPheA : 191 !!...!:!!||| !||| !|||||||||!.!|||||| !|||..! !!!!!.!!| LysArgGluAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleA 300181 : AAAAGGGAGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCG : 300238 192 : spProGlnProArgProPheTyrGluLeuValTyrValIleHisSerLeuAsnGlyTy : 210 || !!||| !!!!!||| !||||||:::|||::: ...||| .!! !.! spThrGlnThrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMe 300239 : ATACACAAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGAT : 300295 211 : rIleLeuSerAlaIleThrMetGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHis : 229 |||:!!! ! !:!:|||! !!.!|||! !.!!|||||||||:!!|||!.!|||||| tIleMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHis 300296 : GATCATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCAT : 300352 230 : IleCysGlyGlnIleAspIleMetIleLeuArgLeuGlnAsnLeuThrGlnLeuGlyA : 249 |||||||||||||||.!.|||..!!!: !||||||:!!:!!|||..!:!! ! !! IleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrG 300353 : ATCTGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGG : 300412 250 : laAsnThrAsnLeuHisProLysLeu >>>> Target Intron 1 >>>> Asp : 258 .!.!.! !:!! ! !||| ! ! ! 1248 bp !!: lyGluLysAspAspGlyProAspPro-+ ++Glu 300413 : GAGAGAAGGACGACGGTCCTGATCCTtt.........................agGAA : 301687 259 : TrpGluValAsnAsnThrIleSerLeuIleThrTyrThrThrLeuLeuLeuSerLeuM : 278 |||:!! !!:!:!!||||||:!!:!!:!:|||!:! !||||||||| !|||!!!! TrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheT 301688 : TGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCA : 301747 279 : etPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuValGluLys : 294 |||||||||||||||!!!||||||||||||!!::!!||| !|||:!! hrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln 301748 : CTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAG : 301797 vulgar: Lalb_14622 171 294 . KQ414889.1 300180 301797 + 242 M 86 258 5 0 2 I 0 1244 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300181 301797 242 + . gene_id 13 ; sequence Lalb_14622 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300181 300438 . + . KQ414889.1 exonerate:protein2genome:local exon 300181 300438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300439 300440 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 300439 301686 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301685 301686 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300181 301797 242 + . alignment_id 13 ; Query Lalb_14622 ; Align 300181 172 258 ; Align 301687 258 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 234 Query range: 257 -> 354 Target range: 280091 -> 280456 258 : AspTrpGluValAsnAsnThrIleSerLeuIleThrTyrThrThrLeuLeuLeuSerL : 277 !!:|||||| !|||:!!.!!|||.!! !.!!|||||| !! !!!!|||:!!|||| GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerL 280092 : GAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTT : 280149 278 : euMetPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuValGluLys >>> : 295 ||! !||||||:!!|||||||||||||||||||||!!::!!||| !|||::: euThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 280150 : TAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt... : 280205 296 : > Target Intron 1 >>>> ThrGlyAsnValGlySerLeuCysPheMetIleA : 306 74 bp ! !!!.|||||| !! ! !!:!||||||| ++CysLeuLysValGlyValSerThrTyrMetIleA 280206 : ......................agTGCTTAAAAGTCGGCGTGTCAACTTACATGATCG : 280310 307 : spTrpTyrLysPheProValGluThrMetArgSerLeuIleLeuIleIleAlaIleSe : 325 ||||||||:::!!.|||! !:!!! ! !:!.!!||||||||||||.!!|||:!:|| spTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaValSe 280311 : ACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCGTGTC : 280367 326 : rAsnAsnProAlaLysIleThrAlaGlyHisIleValAspLeuAsnLeuAlaThrPhe : 344 ||||::! !! !|||:!!||||||||| ! |||:!!||||||::!|||::!!:!||| rAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPhe 280368 : GAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTC : 280424 345 : GlyGlyIleLeuLysThrSerLeuAlaTyr : 354 !!.!!:!: !! ! !!:!|||:!!||| CysSerValSerIleIleAsnLeuSerTyr 280425 : TGCAGCGTGAGTATCATAAATTTATCCTAT : 280456 vulgar: Lalb_14622 257 354 . KQ414889.1 280091 280456 + 234 M 37 111 5 0 2 I 0 70 3 0 2 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280092 280456 234 + . gene_id 14 ; sequence Lalb_14622 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280456 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280092 280456 234 + . alignment_id 14 ; Query Lalb_14622 ; Align 280092 258 111 ; Align 280277 295 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 209 Query range: 257 -> 344 Target range: 206050 -> 206392 258 : AspTrpGluValAsnAsnThrIleSerLeuIleThrTyrThrThrLeuLeuLeuSerL : 277 !!:|||||| !|||||||||! !:!!:!!|||..!|||! !||||||! !:!!|||! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 278 : euMetPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuValGluLys >>> : 295 !! ||| !:!!|||||||||||||||||||||.!.||||||:!!!!::!! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 296 : > Target Intron 1 >>>> ThrGlyAsnValGlySerLeuCysPheMetIleA : 306 81 bp !.! ! !||||||! ! !! !! !! !:!:: ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 307 : spTrpTyrLysPheProValGluThrMetArgSerLeuIleLeuIleIleAlaIleSe : 325 !!||||||:::.!!||| !..! ! !||||||:!!|||||||||||||||!!:|| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 326 : rAsnAsnProAlaLysIleThrAlaGlyHisIleValAspLeuAsnLeuAlaThrPhe : 344 |||| !!||| !|||:!!||||||||| ! !!: !!!!::!!::!||||||!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 vulgar: Lalb_14622 257 344 . KQ414889.1 206050 206392 + 209 M 37 111 5 0 2 I 0 77 3 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206392 209 + . gene_id 15 ; sequence Lalb_14622 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206392 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206392 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206392 209 + . alignment_id 15 ; Query Lalb_14622 ; Align 206051 258 111 ; Align 206243 295 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 257 -> 347 Target range: 272836 -> 273176 258 : AspTrpGluValAsnAsnThrIleSerLeuIleThrTyrThrThrLeuLeuLeuSerL : 277 :!:||| ! !:!!:!! ! ||||||! !|||||| !! !:!!|||:!!|||: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 278 : euMetPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuValGluLys >>> : 295 !: |||||||||||||||::!||||||||||||!!::!!|||..!|||!:! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 296 : > Target Intron 1 >>>> ThrGlyAsnValGlySerLeuCysPheMetIleA : 306 70 bp ...:::|||..!:!! !!:!|||! : ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 307 : spTrpTyrLysPheProValGluThrMetArgSerLeuIleLeuIleIleAlaIleSe : 325 !!|||||| ! !!.|||! !:!! !!!:! !..!|||||||||||||||:!!! !!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 326 : rAsnAsnProAlaLysIleThrAlaGlyHisIleValAspLeuAsnLeuAlaThrPhe : 344 !!:! ! ! !|||||||||||||||...|||||| !:!!::!:!! !|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 345 : GlyGlyIle : 347 |||! !:!! GlyAspVal 273166 : GGCGATGTA : 273176 vulgar: Lalb_14622 257 347 . KQ414889.1 272836 273176 + 177 M 37 111 5 0 2 I 0 66 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273176 177 + . gene_id 16 ; sequence Lalb_14622 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273176 177 + . alignment_id 16 ; Query Lalb_14622 ; Align 272837 258 111 ; Align 273018 295 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 257 -> 347 Target range: 264537 -> 264885 258 : AspTrpGluValAsnAsnThrIleSerLeuIleThrTyrThrThrLeuLeuLeuSerL : 277 !!:|||||| !:!:::: :::||| !|||||| !! !:!!|||:!!|||: GluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerM 264538 : GAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATACTGATATCAA : 264595 278 : euMetPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuValGluLys >>> : 295 !! !|||||||||:!!:!!||||||||||||!!::!!|||..!|||::: etCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGln++ 264596 : TGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcaggt... : 264651 296 : > Target Intron 1 >>>> ThrGlyAsnValGlySerLeuCysPheMetIleA : 306 78 bp ! !!!.||||||..!:!! !!:!||| : ++CysLysLysValGlyGluValValTyrMetSerA 264652 : ......................agTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGA : 264760 307 : spTrpTyrLysPheProValGluThrMetArgSerLeuIleLeuIleIleAlaIleSe : 325 !!|||||| ! !!.||| !:!! !!!:! !..!||||||||||||||| !! !|| snTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLeuIleIleLeuArgSe 264761 : ATTGGTATTACTTACCCTACAAAGATATCCTTGATCTGATTCTCATCATTTTAAGATC : 264817 326 : rAsnAsnProAlaLysIleThrAlaGlyHisIleValAspLeuAsnLeuAlaThrPhe : 344 |!:! ! !|||.!!||||||||| ! |||:!! !!:!!::!:!! !|||||| rSerValValPheLysPheThrAlaGlyLysIleLeuHisMetSerMetTyrThrPhe 264818 : CAGCGTGGTGTTTAAATTCACCGCTGGAAAGATACTTCACATGTCCATGTACACATTC : 264874 345 : GlyGlyIle : 347 .!!! !:!! SerAspVal 264875 : AGTGACGTA : 264885 vulgar: Lalb_14622 257 347 . KQ414889.1 264537 264885 + 174 M 37 111 5 0 2 I 0 74 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264538 264885 174 + . gene_id 17 ; sequence Lalb_14622 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264538 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264726 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264538 264885 174 + . alignment_id 17 ; Query Lalb_14622 ; Align 264538 258 111 ; Align 264727 295 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 169 Query range: 257 -> 352 Target range: 244441 -> 244832 258 : AspTrpGluValAsnAsnThrIleSerLeuIleThrTyrThrThrLeuLeuLeuSerL : 277 !!:|||! !! !!:!:!!.!!! !! !|||||||||||| !! ! !|||:!!:!!: GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheIleAlaLeuValAlaI 244442 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTATAGCACTCGTTGCTA : 244499 278 : euMetPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuValGluLys >>> : 295 !!:!:! !|||! !||||||||||||||||||.!!||| !|||..!|||:!! leValSerAsnThrPheIleLeuCysTyrIleSerAspArgLeuThrGluGln++ 244500 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGACAGGCTGACAGAACAGgt... : 244555 296 : > Target Intron 1 >>>> ThrGlyAsnValGlySerLeuCysPheMetIleA : 306 106 bp ! !!!.||||||..!:!! !!:!|||! !| ++CysLeuLysValGlyGluValValTyrMetThrA 244556 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 244692 307 : spTrpTyrLysPheProValGluThrMetArgSerLeuIleLeuIleIleAlaIleSe : 325 |||||||| ! .!.||| !..!! !!!:! !..!||||||||||||||| ! !|| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSe 244693 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATC : 244749 326 : rAsnAsnProAlaLysIleThrAlaGlyHisIleValAspLeuAsnLeuAlaThrPhe : 344 ||||! !!.!:!!|||||||||||| ! :!!:!! !!:!!:::||| !|||||| rAsnMetValValGluIleThrAlaGlyLysValLeuHisMetSerLeuTyrThrPhe 244750 : GAACATGGTCGTTGAAATCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTC : 244806 345 : GlyGlyIleLeuLysThrSerLeu : 352 |||! !:!! !:!!|||!.!||| GlyAspValSerGluThrLysLeu 244807 : GGCGATGTAAGTGAAACTAAACTT : 244832 vulgar: Lalb_14622 257 352 . KQ414889.1 244441 244832 + 169 M 37 111 5 0 2 I 0 102 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244442 244832 169 + . gene_id 18 ; sequence Lalb_14622 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244442 244552 . + . KQ414889.1 exonerate:protein2genome:local exon 244442 244552 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244553 244554 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244553 244658 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244657 244658 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244659 244832 . + . KQ414889.1 exonerate:protein2genome:local exon 244659 244832 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244442 244832 169 + . alignment_id 18 ; Query Lalb_14622 ; Align 244442 258 111 ; Align 244659 295 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 257 -> 352 Target range: 254071 -> 254448 258 : AspTrpGluValAsnAsnThrIleSerLeuIleThrTyrThrThrLeuLeuLeuSerL : 277 !!:||| !! !!:!:!!.!! !! !|||.!!||||||! !..! !|||:!!:!!: GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaV 254072 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTG : 254129 278 : euMetPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuValGluLysThrGl : 296 !!:!: ||| |||::::::|||||||||.!!||| !|||..!|||:!!..! alValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGlnValGl 254130 : TTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGGTACA : 254186 297 : yAsn{V} >>>> Target Intron 1 >>>> {al}GlySerLeuCysPheMet : 304 !.!.{:} 92 bp {!!}|||..!:!! !!:!||| nGlu{I}-+ ++{le}GlyGluValValTyrMet 254187 : AGAG{A}ct.........................ag{TT}GGTGAAGTGGTTTACATG : 254302 305 : IleAspTrpTyrLysPheProValGluThrMetArgSerLeuIleLeuIleIleAlaI : 324 ! !||||||||| ! .!.||| !..!! !!!:! !..!|||||||||||||||.!! ThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrA 254303 : ACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACAC : 254362 325 : leSerAsnAsnProAlaLysIleThrAlaGlyHisIleValAspLeuAsnLeuAlaTh : 343 !|||||| !!.!:!!|||||||||||| ||| ::::::||| !|| rgSerAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrTh 254363 : GATCGAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACAC : 254419 344 : rPheGlyGlyIleLeuLysThrSerLeu : 352 |||||||! !:!! !:!!|||!:!||| rPheGlyAspValSerGluThrAsnLeu 254420 : GTTCGGCGATGTAAGTGAAACTAATCTT : 254448 vulgar: Lalb_14622 257 352 . KQ414889.1 254071 254448 + 151 M 40 120 S 0 1 5 0 2 I 0 88 3 0 2 S 1 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254072 254448 151 + . gene_id 19 ; sequence Lalb_14622 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254072 254192 . + . KQ414889.1 exonerate:protein2genome:local exon 254072 254192 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254193 254194 . + . intron_id 1 ; splice_site "CT" KQ414889.1 exonerate:protein2genome:local intron 254193 254284 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254283 254284 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254285 254448 . + . KQ414889.1 exonerate:protein2genome:local exon 254285 254448 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254072 254448 151 + . alignment_id 19 ; Query Lalb_14622 ; Align 254072 258 120 ; Align 254287 299 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 296 -> 353 Target range: 238634 -> 238805 297 : AsnValGlySerLeuCysPheMetIleAspTrpTyrLysPheProValGluThrMetA : 316 !!.||||||..!:!! !!:!|||! !||||||||| ! .!.||| !..!! !!!:! LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 238635 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 238692 317 : rgSerLeuIleLeuIleIleAlaIleSerAsnAsnProAlaLysIleThrAlaGlyHi : 335 !..!||||||||||||||| ! !|||||| !!.!|||:!!||||||||| ! euAspLeuIleLeuIleIleLysArgSerAsnValValValLysValThrAlaGlyLy 238693 : TCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCACCGCTGGAAA : 238749 336 : sIleValAspLeuAsnLeuAlaThrPheGlyGlyIleLeuLysThrSerLeuAla : 353 :!!:!! !!:!!:::||| !|||||||||! !:!! !:!!|||!:!|||||| sValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeuAla 238750 : AGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTTGCT : 238805 vulgar: Lalb_14622 296 353 . KQ414889.1 238634 238805 + 125 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238635 238805 125 + . gene_id 20 ; sequence Lalb_14622 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238635 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238635 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238635 238805 125 + . alignment_id 20 ; Query Lalb_14622 ; Align 238635 297 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 285 -> 347 Target range: 224472 -> 224658 286 : TyrIleGlyAspLeuLeuValGluLysThrGlyAsnValGlySerLeuCysPheMetI : 305 |||.!! !...|||!!! !! ::: ...:::|||..!:!!! !:!|||| TyrPheLeuSerLeuPhePheProGlnCysGluLysIleGlyGlnValSerTyrMetI 224473 : TATTTTTTATCGCTATTTTTTCCtcagtgtgaaaaaattggacaAGTGTCGTACATGA : 224530 306 : leAspTrpTyrLysPheProValGluThrMetArgSerLeuIleLeuIleIleAlaIl : 324 |||||||||||::!!!. !!! !.!.! !! ! !!!!! !|||||||||||||||!! leAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMe 224531 : TCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGAT : 224587 325 : eSerAsnAsnProAlaLysIleThrAlaGlyHisIleValAspLeuAsnLeuAlaThr : 343 :||||||::! !! !|||:!:|||||||||:!!!!:|||!!:||| !|||.!!||| tSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThr 224588 : GTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACT : 224644 344 : PheGlyGlyIle : 347 ||||||! !:!! PheGlyAspVal 224645 : TTCGGTGACGTA : 224658 vulgar: Lalb_14622 285 347 . KQ414889.1 224472 224658 + 124 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224473 224658 124 + . gene_id 21 ; sequence Lalb_14622 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224473 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224473 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224473 224658 124 + . alignment_id 21 ; Query Lalb_14622 ; Align 224473 286 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 257 -> 303 Target range: 224323 -> 224461 258 : AspTrpGluValAsnAsnThrIleSerLeuIleThrTyrThrThrLeuLeuLeuSerL : 277 :::|||... ::::!! !! !||| !:!:|||||| !! !||||||:!!|||| GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 278 : euMetPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuValGluLysThrGl : 296 || |||||||||||||||...||||||||||||!!:|||:!!!.!|||:::... euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlnValLy 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggtgaa : 224438 297 : yAsnValGlySerLeuCysPhe : 303 ||| ...||| ||| sAsnPheLeuLysLeuPhePhe 224439 : aaattttttaaaattattcttc : 224461 vulgar: Lalb_14622 257 303 . KQ414889.1 224323 224461 + 115 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224461 115 + . gene_id 22 ; sequence Lalb_14622 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224324 224461 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224461 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224461 115 + . alignment_id 22 ; Query Lalb_14622 ; Align 224324 258 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 257 -> 294 Target range: 219328 -> 219439 258 : AspTrpGluValAsnAsnThrIleSerLeuIleThrTyrThrThrLeuLeuLeuSerL : 277 !!:|||:!! !|||:!!..!! ||| !:!:||||||! !! !||||||:!!|||| GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 278 : euMetPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuValGluLys : 294 || |||||||||||||||...||||||||||||!!::!!:!!!.!|||:!: euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: Lalb_14622 257 294 . KQ414889.1 219328 219439 + 114 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219439 114 + . gene_id 23 ; sequence Lalb_14622 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219439 114 + . alignment_id 23 ; Query Lalb_14622 ; Align 219329 258 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 305 -> 355 Target range: 292425 -> 292575 306 : AspTrpTyrLysPheProValGluThrMetArgSerLeuIleLeuIleIleAlaIleS : 325 !!:||||||!!..!.||| !..!! ! |||..!:!!:!!|||:!::!!||||||! GluTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIleT 292426 : GAATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAA : 292483 326 : erAsnAsnProAlaLysIleThrAlaGlyHisIleValAspLeuAsnLeuAlaThrPh : 344 !!!!.:!!||| !|||:!!||||||||| ! ||| !!! !|||:::||| !||||| hrLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPh 292484 : CGAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTT : 292540 345 : eGlyGlyIleLeuLysThrSerLeuAlaTyrLeu : 355 ||||!.!:!!! !:!!:!!!.!|||!.!! :!! eGlyAlaValArgGluSerLysLeuValLeuIle 292541 : TGGCGCTGTACGTGAATCAAAACTAGTCTTGATA : 292575 vulgar: Lalb_14622 305 355 . KQ414889.1 292425 292575 + 110 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292426 292575 110 + . gene_id 24 ; sequence Lalb_14622 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292426 292575 . + . KQ414889.1 exonerate:protein2genome:local exon 292426 292575 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292426 292575 110 + . alignment_id 24 ; Query Lalb_14622 ; Align 292426 306 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 188 -> 244 Target range: 202712 -> 202880 189 : LeuPheAspProGlnProArgProPheTyrGluLeuValTyrValIleHisSerLeuA : 208 :!!.!!||| !::! !!!!||| ! !!|||:!! !!!:! !|||!..! !:!! IleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleValA 202713 : ATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAG : 202770 209 : snGlyTyrIleLeuSerAlaIleThrMetGlyAlaCysGlyLeuAlaAlaLeuPheAl : 227 !! ! !:!!:!! !!.!:!!|||:!:||||||||| !!|||.!!||||||||||| laValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAl 202771 : CTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGC : 202827 228 : aThrHisIleCysGlyGlnIleAspIleMetIleLeuArgLeuGlnAsnLeu : 244 |..!||| !|||||||||!!:|||:!!:!!!!: ! !!|||:!!:!!||| aValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeu 202828 : GGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTG : 202880 vulgar: Lalb_14622 188 244 . KQ414889.1 202712 202880 + 106 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202713 202880 106 + . gene_id 25 ; sequence Lalb_14622 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202713 202880 . + . KQ414889.1 exonerate:protein2genome:local exon 202713 202880 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202713 202880 106 + . alignment_id 25 ; Query Lalb_14622 ; Align 202713 189 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 294 -> 370 Target range: 807317 -> 807545 295 : IleLeuTyrValSerMetIlePheAsnIlePheIlePheCysTyrIleGlyGluLysL : 314 :!!||| |||!!!:!!:!:.!!.!.:!:!:!:!!!:!..!||| |||.!.! !| ValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrL 807318 : GTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACAC : 807375 315 : euThrThrGlnCysLeuGlnValGlyGluLysAlaTyrMetThrGlnTrpTyrArgLe : 333 || !:!!!:! ! !:!!:!!!.!:!! |||||| :!!! |||||||||! euGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCy 807376 : TCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTG : 807432 334 : uProHisLysThrAlaThrGlyLeuIleLeuLeuIleSerArgSerArgMetValThr : 352 !! ! ! .!!|||! !! !|||:!!|||:!!||| !|||.!!!.! ! ! ! sHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyr 807433 : CCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTAT : 807489 353 : ArgIleThrAlaGlyLysLeuLeuProIleSerIleSerThrPheGlyAspVal : 370 ||||||||||||||||||!!!:!!|||!!:!:!:!!! !|||||| !!!::!! ArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIle 807490 : CGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATA : 807545 vulgar: Lalb_14627 294 370 . KQ414940.1 807317 807545 + 137 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807318 807545 137 + . gene_id 1 ; sequence Lalb_14627 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807318 807545 . + . KQ414940.1 exonerate:protein2genome:local exon 807318 807545 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807318 807545 137 + . alignment_id 1 ; Query Lalb_14627 ; Align 807318 295 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14641 [mRNA] [translate_table: standard] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 152 -> 224 Target range: 117782 -> 117998 153 : MetLysAsnAspMetIleValGluAlaAlaTyrGluIleSerTrpTyrAsnMetArgP : 172 :!::!!!:!!!: !|||! !...||||||||| !:!: !!|||:!! ! !! ValGlnSerGluAlaIleGlyArgAlaAlaTyrThrValProTrpHisTrpTyrProA 117783 : GTTCAGAGCGAAGCGATCGGTCGTGCAGCCTATACGGTGCCTTGGCATTGGTACCCTC : 117840 173 : roSerMetSerArgGlnValIleLeuLeuLeuSerArgSerGlnLysGlyLeuCysLe : 191 !!!!:!! !!!:!! !..!! !:!!|||:!!! !|||.!!|||||| !:!! !!|| rgCysLeuArgLysProThrAsnMetLeuMetIleArgGlyGlnLysProValArgLe 117841 : GTTGCTTGCGAAAACCAACCAACATGCTGATGATCAGAGGTCAGAAACCGGTTCGTCT : 117897 192 : uThrPheGlyLysPheSerAlaLeuSerLeuGluThrPheThrTrpValSerValLeu : 210 |||| !||||||.!! !!.!||||||||||||||||||.!!! |||||||||:!! uThrAlaGlyLysIleValGlyLeuSerLeuGluThrPheAlaSerValSerValVal 117898 : GACCGCCGGAAAAATCGTCGGACTCTCTCTGGAAACGTTTGCCTCTGTATCCGTCGTT : 117954 211 : ArgGlnIleLeuSerThrMetGluAspAspCysAlaArgTyr : 224 ! !...|||||| ! !:!:..! !..! !|||...::: IleSerIleLeuLeuCysValSerProSerHisAlaHisPhe 117955 : ATCTCTATTCTCCTCTGTGTCTCGCCTTCCCACgctcatttc : 117998 vulgar: Lalb_14641 152 224 . KQ414940.1 117782 117998 + 100 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 117783 117998 100 + . gene_id 1 ; sequence Lalb_14641 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 117783 117998 . + . KQ414940.1 exonerate:protein2genome:local exon 117783 117998 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 117783 117998 100 + . alignment_id 1 ; Query Lalb_14641 ; Align 117783 153 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 172 Query range: 311 -> 380 Target range: 4381 -> 4085 312 : GlnCysSerArgValGlyGluValAlaTyrMetIleAspTrpTyrAsnLeuGlnGlyLysLy : 332 ||||||! !!:!||||||||||||!.!||||||! !||||||||| !!|||! ! !!:!!: GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 333 : sLysGlnCysLeuIleMetIleIleAlaMetSerAsnSerSerSerLysPheThrAlaGlyG : 353 !! ! !||||||:!!||||||.!! |||||| ! ! !:!!.!!||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 354 : lyMetValGluLeuSerLeuSerThrPheGlyAsp >>>> Target Intron 1 >>>> : 365 ::: ...:::||||||! !|||||||||||| 89 bp ysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATgt......................... : 4220 366 : ValValLysThrAlaIleAlaTyrMetAsnMetLeuLeuAlaLeuThr : 380 ||||||||||||!.!.!!||||||:!!|||||||||! ! !:!!:!! ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMetSer 4219 : agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAAATGTCC : 4086 vulgar: Lalb_14633 311 380 . LHQN01027980.1 4381 4085 - 172 M 53 159 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4086 4381 172 - . gene_id 1 ; sequence Lalb_14633 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4223 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4086 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4086 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4086 4381 172 - . alignment_id 1 ; Query Lalb_14633 ; Align 4382 312 159 ; Align 4134 365 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 204 Query range: 9 -> 140 Target range: 441 -> 48 10 : TyrIlePheLysIleIleArgTrpIleLeuAsnSerLeuGlyIleTrpProSerLeuPheGluA : 31 |||! !.!!:!! ! !|||||| :!!!!.|||:!!|||! !||||||..!!!!! ..!| TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerA 441 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGA : 378 32 : snSerAsnGlnPheGlnGlnAsnValSerIleGlyLeuCysAsnValValLeuLeuPheAlaIl : 52 || !.!.::! ! ......:!!! !! !! !:!!||| !!..!!.!:!!||||||:!!|| snLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIl 377 : ACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGAT : 315 53 : eValProPheThrLeuHisLeuThrValGluGluLysSerTrpLysAlaArgValLysLeuIle : 73 |:!!|||! !:!!|||||||||! !:!!|||:!! !!!!!:: ! .!!!:!||||||:!!:!! eIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeu 314 : AATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTC : 252 74 : GlyLeuLeuThrPheCysTrpIleSerLeuPheLysTyrTrpSerLeuValSerCysLysProA : 95 |||! !|||!:! !!! !.!!!!!:!!.!!!..||| ! !|||:!! ! ! ::: !! GlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysT 251 : GGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAA : 186 96 : snLeuLysTyrCysIleGluPheIleGlnHisAspTrpArgGluValGluHisSerGluAspAr : 116 .!:!! ! :!!! !:!!.!. !!!::!! !||||||||| !..! ......||| :: hrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLy 185 : CCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaa : 123 117 : gGluLeuMetLeuLysTyrGlyAsnValGlyArgAsnLeuThrIleLeuCysLeuValPheMet : 137 :|||:::||||||||||||!.!!!. !!.!!||| !! !.!!|||!!!||| !:!!|||!!: sGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIle 122 : agaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATA : 60 138 : TyrSerGly : 140 :!!.!!||| HisGlyGly 59 : CACGGTGGT : 49 vulgar: Lalb_14619 9 140 . LHQN01027980.1 441 48 - 204 M 131 393 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 49 441 204 - . gene_id 1 ; sequence Lalb_14619 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 49 441 . - . LHQN01027980.1 exonerate:protein2genome:local exon 49 441 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 49 441 204 - . alignment_id 1 ; Query Lalb_14619 ; Align 442 10 393 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 164 Query range: 287 -> 379 Target range: 4581 -> 4213 288 : AspTrpGluValAsnAsnThrLeuSerLeuIleThrTyrThrMetLeuLeuLeuSerLeuMe : 308 !!:||| !! !!:!:!!.!!! !! !|||.!!||||||! !:!: !|||:!!:!!:!!:! GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValVa 4581 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTGT : 4521 309 : tPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuValGluLys >>>> Target : 325 : ||| |||::::::|||||||||.!!||| !|||..!|||:!! 9 lSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4520 : TtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt........... : 4468 326 : Intron 1 >>>> ThrGlyAsnValGlySerLeuCysPheMetIleAspTrpTyrLysP : 340 2 bp ! !!!.||||||..!:!! !!:!|||! !||||||||| ! . ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrL 4467 : ..............agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATC : 4333 341 : heProValGluThrMetArgSerLeuIleLeuIleIleAlaMetSerAsnAsnProAlaLys : 360 !.||| !..!! !!!:! !..!|||||||||||||||.!! |||||| !!.!:!! euProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGlu 4332 : TGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAA : 4273 361 : IleThrAlaGlyHisIleAlaAspLeuAsnLeuSerThrPheGlyGlyValSerAsp : 379 |||||||||||| ||| ::::::|||! !|||||||||! !||||||!!: IleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGlu 4272 : ATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAA : 4214 vulgar: Lalb_14619 287 379 . LHQN01027980.1 4581 4213 - 164 M 37 111 5 0 2 I 0 88 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4214 4581 164 - . gene_id 2 ; sequence Lalb_14619 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4581 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4581 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4214 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4214 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4214 4581 164 - . alignment_id 2 ; Query Lalb_14619 ; Align 4582 288 111 ; Align 4379 325 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 256 Query range: 0 -> 142 Target range: 444 -> 24 1 : AsnTyrSerValGlnValAsnArgTrpPheLeuLysProIleGlyIleTrpProIleGlyProA : 22 :!!||||||:!!||| !||||||||| :!!||| !||||||! !|||||| ! ! AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpPro------GlnP 444 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCA------CAGT : 387 23 : spAlaThrArgSerGluArgIlePheSerSerLeuLeuAsnIleAlaCysHisSerLeuValVa : 43 !:!!:!!!.! !||||||! !.!!||| !!:!!||||||:!: !|||:!!!!! !:!!:! heSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLe 386 : TCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACT : 324 44 : lPheThrPheAlaProCysValMetPheIleLeuPheGluGluThrSerLeuAspAlaArgIle : 64 !|||:!!.!. !|||||| !:!! !:!!:!!.!.|||:!! !!!!!!! !!.!!!:!:!: uPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysVal 323 : ATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTG : 261 65 : GlnAlaIleGlyProMetSerHisTrpLeuMetGlyGluLeuAsnTyrCysCysLeuSerPheA : 86 :!! !:!!||||||:!!|||||||||:!!.!. !! :!!!:!||| ! |||! !.!.| LysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuA 260 : AAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGC : 195 87 : rgThrAsnAspIlePheArgCysIleArgHisMetLysThrAspTrpLysThrIleGluLysSe : 107 || !!!. !||| !!.!! !:!!!.!||||||:!!|||||||||!:!|||! :::.. rgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLy 194 : GACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaa : 132 108 : rSerAspArgGluLeuMetLeuLysAspAlaLysValGlyArgSerIleAlaThrIleAlaAla : 128 .... :::|||:::||||||||| !!|||||| !!.!!|||! ! |||! !.!!..!||| sGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAla 131 : ggagaagaaagaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCG : 69 129 : ValCysMetAsnLeuGlyValPheSerTyrAsnPheValThr : 142 :!!! !!!::!! !|||:!!.!!.!!||| ! !!:!!||| IlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThr 68 : ATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACA : 25 vulgar: Lalb_14627 0 142 . LHQN01027980.1 444 24 - 256 M 18 54 G 2 0 M 122 366 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 25 444 256 - . gene_id 1 ; sequence Lalb_14627 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 25 444 . - . LHQN01027980.1 exonerate:protein2genome:local exon 25 444 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 25 444 256 - . alignment_id 1 ; Query Lalb_14627 ; Align 445 1 54 ; Align 391 21 366 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 167 Query range: 316 -> 371 Target range: 4381 -> 4216 317 : GlnCysLeuGlnValGlyGluLysAlaTyrMetThrGlnTrpTyrArgLeuProHisLysTh : 337 |||||||||:!!||||||||| !!.!|||||||||.!.|||||| !||||||!!.!:!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 338 : rAlaThrGlyLeuIleLeuLeuIleSerArgSerArgMetValThrArgIleThrAlaGlyL : 358 ! ! !! !|||||||||:!!|||!!!||||||!.!:!!|||..!..!||||||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 359 : ysLeuLeuProIleSerIleSerThrPheGlyAspValSer : 371 ||:::... :::|||:!!! !|||||||||||||||||| ysIlePheHisMetSerLeuTyrThrPheGlyAspValSer 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGT : 4217 vulgar: Lalb_14627 316 371 . LHQN01027980.1 4381 4216 - 167 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4217 4381 167 - . gene_id 2 ; sequence Lalb_14627 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4217 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4217 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4217 4381 167 - . alignment_id 2 ; Query Lalb_14627 ; Align 4382 317 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 153 Query range: 300 -> 372 Target range: 2023 -> 1816 301 : IlePheAsnIlePheIlePheCysTyrIleGlyGluLysLeuThrThrGlnCysLeuGlnVa : 321 ||| !||||||||||||.!!||||||||||||||| |||||| :!!|| IleAlaAsnIlePheIleLeuCysTyrIleGlyGlu------ThrThr---------LysVa 2023 : ATTGCTAATATATTCATACTTTGTTACATCGGAGAG------ACTACC---------AAAGT : 1978 322 : lGlyGluLysAlaTyrMetThrGlnTrpTyrArgLeuProHisLysThrAlaThrGlyLeuI : 342 ||||! !|||!.!|||||||||:!!|||||||||||| !!!!.||||||||| !|||!!!: lGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGlyPheV 1977 : CGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGGTTTTG : 1915 343 : leLeuLeuIleSerArgSerArgMetValThrArgIleThrAlaGlyLysLeuLeu<-><-> : 361 !!:!!:!!||||||||||||!!!||||||! !!:!|||||||||||||||!!!:!! alMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheValTyr*** 1914 : TAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTATACTGA : 1855 362 : ProIleSerIleSerThrPheGlyAspValSerIle : 372 !! |||:!!:!!||||||||||||||||||||| ThrSerSerValAlaThrPheGlyAspValSerIle 1854 : ACATCGTCTGTCGCAACATTTGGCGATGTGagtatt : 1817 vulgar: Lalb_14627 300 372 . LHQN01027980.1 2023 1816 - 153 M 12 36 G 2 0 M 2 6 G 3 0 M 41 123 G 0 6 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1817 2023 153 - . gene_id 3 ; sequence Lalb_14627 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1817 2023 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1817 2023 . - . insertions 6 ; deletions 5 LHQN01027980.1 exonerate:protein2genome:local similarity 1817 2023 153 - . alignment_id 3 ; Query Lalb_14627 ; Align 2024 301 36 ; Align 1988 315 6 ; Align 1982 320 123 ; Align 1853 361 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 256 Query range: 5 -> 145 Target range: 444 -> 30 6 : AsnLeuSerIleGlnTrpAsnArgTrpIleLeuArgProMetGlyValTrpProSerSerGlyT : 27 :!!! !|||:!!||||||||||||||| :!!!:! !!!:|||..!||||||..! AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGln------P 444 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAG------T : 387 28 : hrAspSerGlyPheGluLysCysSerAsnArgLeuMetAsnLeuValCysTyrSerLeuIleSe : 48 !...|||..!.!!|||!:! !! !::!|||:!!:!:|||:!!:!!||||||!!! !||| heSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLe 386 : TCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACT : 324 49 : rPheLeuPheValProCysTrpLeuPheMetMetLeuGluValGluAsnLeuTyrAspLysLeu : 69 !|||! !.!.:!!||||||! !||| !:!:||||||||| !! !!.!!!!||| |||:!! uPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysVal 323 : ATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTG : 261 70 : LysLeuPheGlyProLeuSerPheCysValMetAlaTyrMetLysTyrTyrSerLeuMetThrH : 91 |||:!!.!!|||||||||||| !!! |||.!...! !!!:!..||| !! !|||:!! !! LysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuA 260 : AAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGC : 195 92 : isAlaAsnAspIleArgGluCysIleLysTyrIleGluTrpAspTrpArgAsnValLysTyrSe : 112 .. !!!. !|||!.!.!.! !:!!!!.:!!!!:||| |||||||||!....! .. rgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLy 194 : GACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaa : 132 113 : rLysAspArgGluIleMetValAlaAsnAlaLysPheGlyArgArgLeuValLysIleCysMet : 133 .::: :::|||:::|||:!! ! !!|||||||||.!!||| ! !!.!! .!!||| ! sGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAla 131 : ggagaagaaagaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCG : 69 134 : PhePheMetTyrSerGlyPheValPheTyrTyrIle : 145 .!!|||!!::!!.!!|||.!.:!! |||! !:!! IlePheIleHisGlyGlyIleLeuGlyTyrCysVal 68 : ATCTTCATACACGGTGGTATACTTGGATATTGTGTT : 31 vulgar: Lalb_14632 5 145 . LHQN01027980.1 444 30 - 256 M 19 57 G 2 0 M 119 357 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 31 444 256 - . gene_id 1 ; sequence Lalb_14632 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 31 444 . - . LHQN01027980.1 exonerate:protein2genome:local exon 31 444 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 31 444 256 - . alignment_id 1 ; Query Lalb_14632 ; Align 445 6 57 ; Align 388 27 357 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 140 Query range: 325 -> 379 Target range: 4381 -> 4219 326 : HisCysAsnArgValGlyGluValAlaTyrMetIleAspTrpTyrGlnLeuTrpGlyAsnAr : 346 !!.||| !:!||||||||||||!.!||||||! !||||||||| ! ||| !!..|| GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 347 : gLysArgCysLeuIleLeuIleIleAlaMetSerAsnCysSerThrLysLeuThrAlaGlyL : 367 |! ! ! !|||||||||||||||.!! |||||| !..!:!!:!!|||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 368 : ysMetValGluLeuSerLeuSerThrPheGlyAspVal : 379 ||::: ...:::||||||! !||||||||||||||| ysIlePheHisMetSerLeuTyrThrPheGlyAspVal 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATGTA : 4220 vulgar: Lalb_14632 325 379 . LHQN01027980.1 4381 4219 - 140 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4220 4381 140 - . gene_id 2 ; sequence Lalb_14632 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4220 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4220 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4220 4381 140 - . alignment_id 2 ; Query Lalb_14632 ; Align 4382 326 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 223 Query range: 24 -> 155 Target range: 441 -> 48 25 : TyrIlePheLysHisSerArgTrpIleLeuAsnSerIleGlyIleTrpProSerPheLeuLysA : 46 |||! !.!!:!! !:!|||||| :!!!!.|||||||||! !||||||..!|||! !..!| TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerA 441 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGA : 378 47 : snAsnAsnGlnPheGlnGlnAsnPheSerValGlyLeuCysAsnIleValLeuLeuPheAlaIl : 67 || !.!.::! ! .......!.! ! !! !:!!||| !!! !!.!:!!||||||:!!|| snLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIl 377 : ACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGAT : 315 68 : eLeuProPheThrLeuTyrLeuAlaValGluGluLysAsnLeuMetIleArgValLysLeuPhe : 88 |:!!|||! !:!!|||:!!||| !:!!|||:!! !!.!!!! ! !:!||||||:!!.!! eIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeu 314 : AATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTC : 252 89 : GlyPheLeuSerPheCysTrpIleCysLeuLeuLysTyrTrpValLeuIleAlaCysLysProA : 110 ||| |||||| !!! !.!!|||:!!:!!!..||| :!!|||:!: ! ! ::: !! GlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysT 251 : GGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAA : 186 111 : snLeuLysAsnCysIleGluTyrValGlnHisAspTrpArgGluValGluGlnArgGluAspAr : 131 .!:!! ! :!!! !:!!.!.:!!:!!:!! !||||||||| !..! ::::::||| :: hrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLy 185 : CCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaa : 123 132 : gGluValMetLeuLysTyrGlyAsnValGlyArgAsnLeuThrLeuLeuCysValValPheMet : 152 :||||||||||||||||||!.!!!. !!.!!||| !! !.!!:!!!!!|||!.!:!!|||!!: sGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIle 122 : agaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATA : 60 153 : SerSerGly : 155 !.!!||| HisGlyGly 59 : CACGGTGGT : 49 vulgar: Lalb_14622 24 155 . LHQN01027980.1 441 48 - 223 M 131 393 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 49 441 223 - . gene_id 1 ; sequence Lalb_14622 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 49 441 . - . LHQN01027980.1 exonerate:protein2genome:local exon 49 441 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 49 441 223 - . alignment_id 1 ; Query Lalb_14622 ; Align 442 25 393 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 163 Query range: 257 -> 352 Target range: 4581 -> 4204 258 : AspTrpGluValAsnAsnThrIleSerLeuIleThrTyrThrThrLeuLeuLeuSerLeuMe : 278 !!:||| !! !!:!:!!.!! !! !|||.!!||||||! !..! !|||:!!:!!:!!:! GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValVa 4581 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTGT : 4521 279 : tPheAsnIlePheIleLeuCysTyrIleGlyAspLeuLeuValGluLys >>>> Target : 295 : ||| |||::::::|||||||||.!!||| !|||..!|||:!! 9 lSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4520 : TtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt........... : 4468 296 : Intron 1 >>>> ThrGlyAsnValGlySerLeuCysPheMetIleAspTrpTyrLysP : 310 2 bp ! !!!.||||||..!:!! !!:!|||! !||||||||| ! . ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrL 4467 : ..............agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATC : 4333 311 : heProValGluThrMetArgSerLeuIleLeuIleIleAlaIleSerAsnAsnProAlaLys : 330 !.||| !..!! !!!:! !..!|||||||||||||||.!! !|||||| !!.!:!! euProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGlu 4332 : TGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAA : 4273 331 : IleThrAlaGlyHisIleValAspLeuAsnLeuAlaThrPheGlyGlyIleLeuLysThrSe : 351 |||||||||||| ||| ::::::||| !|||||||||! !:!! !:!!|||!: IleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAs 4272 : ATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAA : 4210 352 : rLeu : 352 !||| nLeu 4209 : TCTT : 4205 vulgar: Lalb_14622 257 352 . LHQN01027980.1 4581 4204 - 163 M 37 111 5 0 2 I 0 88 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4205 4581 163 - . gene_id 2 ; sequence Lalb_14622 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4581 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4581 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4205 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4205 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4205 4581 163 - . alignment_id 2 ; Query Lalb_14622 ; Align 4582 258 111 ; Align 4379 295 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 191 Query range: 20 -> 165 Target range: 462 -> 36 21 : AsnTyrLysSerAspValAsnTyrThrLeuGluMetCysArgTrpValThrLysProIleGlyV : 42 ||| ! :!!..! !:!!|||!:!|||:!! ! !||||||!.!! !||| !||||||. AsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyT 462 : AATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCA : 399 43 : alTrpProPheValTyrSerArgThrSerLysLeuGluLysLeuMetSerIleValLeuLeuTh : 63 .!|||||| ..! !:!!|||!!.||||||!:! !!!:||| !:!!||| !.. hrTrpPro---------GlnPheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnVa 398 : CATGGCCA---------CAGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGT : 345 64 : rValCysPheSerAspLeuLeuPheSerIleIleProProGlyHisTyrValIlePheValGlu : 84 !:!!|||!:!!!!! :!!|||||||||||||||||| !..! :!!:!!!!:.!.! !:!! lIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLys 344 : GATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAA : 282 85 : LysAsnValTyrValIleValLysLeuLeuCysProIleAlaPheGlySerSerSerAlaIleL : 106 !!.! !!|||..!! !||||||:!!||| !!|||:!:::! ! !! !! !!!! !|||! GlyThrPheTyrThrLysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleS 281 : GGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCA : 216 107 : ysTyrLeuTyrLeuValPheLysGlyAsnValPheLysArgCysLeuValHisValGluArgAs : 127 ..||| ! |||:!!.!.::! !!!!...!.!. ! !.!! !:!! !|||:!!|||! !|| erTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPheValAsnHisMetGluThrAs 215 : GTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGA : 153 128 : pTrpLysThrValValAspGlnArgTyrArgArgIleMetValArgGlnSerSerValSerArg : 148 ||||!:!|||..!... :::... :::...:::|||:!!!:! ! :!!!.! !!|||||| pTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArg 152 : TTGGAGAACGACGacgagaaaggagaagaaagaagtcATGCTGAAGTACGCAAAATTTAGTCGA : 90 149 : GlnLeuIleValLeuCysValIlePheLeuTyrSerAlaGlyMetSerTyr : 165 ! ! :!!!!!|||!.!||||||:!!:!!.!!!.! !:!:.!!||| TyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleLeuGlyTyr 89 : TACGCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTATACTTGGATAT : 37 vulgar: Lalb_14621 20 165 . LHQN01027980.1 462 36 - 191 M 24 72 G 3 0 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 37 462 191 - . gene_id 1 ; sequence Lalb_14621 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 37 462 . - . LHQN01027980.1 exonerate:protein2genome:local exon 37 462 . - . insertions 0 ; deletions 3 LHQN01027980.1 exonerate:protein2genome:local similarity 37 462 191 - . alignment_id 1 ; Query Lalb_14621 ; Align 463 21 72 ; Align 391 48 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 327 -> 383 Target range: 4381 -> 4213 328 : AsnCysSerLysIleGlyProAlaValTyrGluIleAspTrpTyrAsnLeuProTyrLysLy : 348 .!.|||! !|||:!!||| !!.!|||||| !! !||||||||| !!|||||| ! !:!!: GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 349 : sAlaHisAspLeuIleLeuLeuSerValValSerAsnHisProProLysLeuThrAlaGlyL : 369 ! !! !||||||||||||:!!! !..! !|||||| ! !:!!:!!|||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 370 : ysMetPheThrLeuSerLeuAsnThrPheSerSerValGlyAsp : 383 ||:::||| :::|||||| !!||||||.!!..!|||.!!!!: ysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGlu 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAA : 4214 vulgar: Lalb_14621 327 383 . LHQN01027980.1 4381 4213 - 131 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4214 4381 131 - . gene_id 2 ; sequence Lalb_14621 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4214 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4214 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4214 4381 131 - . alignment_id 2 ; Query Lalb_14621 ; Align 4382 328 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 197 Query range: 2 -> 141 Target range: 444 -> 36 3 : AsnTyrThrLeuGluMetCysArgTrpLeuLeuLysIleLeuGlyValTrpThrLeuValTyrH : 24 :!!|||!:!|||:!! ! !|||||| !:!!|||! !:!!|||..!||| !! ! AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpPro---------G 444 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCA---------C : 390 25 : isArgIleSerLysSerAspArgAlaLeuCysThrAlaThrLeuAlaThrCysIleGlyIleLe : 45 !. ! |||!!. !!!:||| !:!!! ! ! ! ! !!.!! !||| ! ! !:! lnPheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIl 389 : AGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAAT : 327 46 : uSerPheThrIleLeuProSerLeuTyrSerValIlePheThrLysAsnSerThrAspThrIle : 66 ! !|||:!!|||:!!|||!!!! !! !:!!!!:.!. !|||...!!! ! !!|||! ! eLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLys 326 : ACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAA : 264 67 : IleLysLeuLeuGlyProValGlyLeuCysSerPheCysThrValLysTyrMetTyrLeuIleL : 88 :!:|||:!!|||||||||:!!.!!! !!! !||||||! !:!!!..|||! |||:!:| ValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuL 263 : GTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGC : 198 89 : euLysGlyLysSerLeuGlyArgCysValGlnHisLeuGluArgAspTrpGluMetValThrHi : 109 ||::! !!|||!!!:!! !!.!! !|||.!.|||:!!|||! !||||||..!! !..!|||.. euArgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrAr 197 : TGCGACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgag : 135 110 : sProGlyHisArgSerIleMetLeuLysTyrSerSerIleSerArgLysLeuIleValLeuCys : 130 . :::...:::||||||||||||:!!!.!.!!|||||| ! ! :!!!!!||| gLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCys 134 : aaaggagaagaaagaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGT : 72 131 : ValValPheLeuTyrSerGlyGlyLeuSerTyr : 141 !.!:!!|||:!!:!!.!!||| !|||.!!||| AlaIlePheIleHisGlyGlyIleLeuGlyTyr 71 : GCGATCTTCATACACGGTGGTATACTTGGATAT : 37 vulgar: Lalb_14625 2 141 . LHQN01027980.1 444 36 - 197 M 18 54 G 3 0 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 37 444 197 - . gene_id 1 ; sequence Lalb_14625 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 37 444 . - . LHQN01027980.1 exonerate:protein2genome:local exon 37 444 . - . insertions 0 ; deletions 3 LHQN01027980.1 exonerate:protein2genome:local similarity 37 444 197 - . alignment_id 1 ; Query Lalb_14625 ; Align 445 3 54 ; Align 391 24 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 254 Query range: 9 -> 228 Target range: 1070 -> 410 10 : TyrIlePheLysIleIleArgTrpIleLeuAsnSerLeuGlyIleTrpProSerLeuPheGl : 30 |||! !.!!:!! ! !|||||| :!!!!.|||:!!||| !||||||..!! !! .. TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSerSe 1070 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCGTC : 1010 31 : uAsnSerAsnGlnPheGlnGlnAsnValSerIleGlyLeuCysAsnValValLeuLeuPheA : 51 !||| !.!.::!.!! ......:!!! !! !! !:!!||| !!..!!.!:!!||||||. rAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheT 1009 : GAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCA : 947 52 : laIleValProPheThrLeuHisLeuThrValGluGluLysSerTrpLysAlaArgValLys : 71 !!|||:!!|||! !:!!||||||:!!! !:!!|||:!!:!!!!!!:: ! .!!!:!|||||| hrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLys 946 : CGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAA : 887 72 : LeuIleGlyLeuLeuThrPheCysTrpIleSerLeuPheLysTyrTrpSerLeuValSerCy : 92 :!!:!!|||! !|||!:! !!! !.!!!!!:!!.!!!..||| ! !|||:!! ! ! IleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuAr 886 : ATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCG : 824 93 : sLysProAsnLeuLysTyrCysIleGluPheIleGlnHisAspTrpArgGluValGluHisS : 113 ::: !!.!:!!::::!!! !.!!.!. !!!::!! !||||||||| !..! .... gArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgL 823 : ACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaa : 761 114 : erGluAspArgGluLeuMetLeuLysTyrGlyAsnValGlyArgAsnLeuThrIleLeuCys : 133 ..||| :::|||:::||||||||||||!.!!!. !!.!!||| !! !.!!|||! !||| ysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCys 760 : aggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGT : 701 134 : LeuValPheMetTyrSerGlyGlyPheMetTyrHisThrIleMetGlnTyr<->AlaIleGl : 153 !:!!|||!!::!!.!!||| !.!! ||| !..!!!:! !!:! .!!!!:! ThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetVa 700 : ACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGT : 638 154 : yThrPheValAspGluHisAsnArgThrIleLysProLeuValTyrProThrTyrSerGlyL : 174 !..! ! |||! .!..!.!.!! !! !:!:::: !||| !! |||! !|||!.!|||| lValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyL 637 : TGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGC : 575 175 : euPheAspSerGlnAlaSerProPheTyrGluLeuValTyrAlaValHisSerValThrGly : 194 ||.!! !.!..!!!:! !!.!. !!|||:!!||| ! ! !!!.! !:!!:!!||| euLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGly 574 : TCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGA : 515 195 : TyrValIleTyrSerIleThrValGlyAlaCysGlyLeuAlaAlaMetPheAlaThrHisIl : 215 !:!:!! !!!!!! !.!!:!!.!!!.! .!!|||.!!::! .!..!!:!!||| PheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAl 514 : TTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGC : 452 216 : eCysGlyGlnIleAspIleMetIleLeuArgLeuGlnAsn : 228 ! !||||||:!:! !:!::!:!!:||| !:!!:!!:!! aSerGlyGlnLeuGlyValValMetLeuSerIleGluAsp 451 : GTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGAT : 411 vulgar: Lalb_14619 9 228 . LHQN01028641.1 1070 410 - 254 M 141 423 G 0 3 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 411 1070 254 - . gene_id 1 ; sequence Lalb_14619 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 411 1070 . - . LHQN01028641.1 exonerate:protein2genome:local exon 411 1070 . - . insertions 3 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 411 1070 254 - . alignment_id 1 ; Query Lalb_14619 ; Align 1071 10 423 ; Align 645 151 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 420 Query range: 5 -> 289 Target range: 1073 -> 156 6 : AsnLeuSerIleGlnTrpAsnArgTrpIleLeuArgProMetGlyValTrpProSerSerGl : 26 :!!! !|||:!!||||||||||||||| :!!!:! !!!:|||!.!||||||..!||| AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSer-- 1073 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCC-- : 1013 27 : yThrAspSerGlyPheGluLysCysSerAsnArgLeuMetAsnLeuValCysTyrSerLeuI : 47 ...|||..!.!!|||!:! !! !::!|||:!!:!!|||:!!:!!||||||!!! !: ----SerSerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaV 1012 : ----TCGTCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAG : 956 48 : leSerPheLeuPheValProCysTrpLeuPheMetMetLeuGluValGluAsnLeuTyrAsp : 67 !! !||| !.!.:!!||||||! !||| !:!:||||||||| !|||!.!!!!||| alLeuPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThr 955 : TACTATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACG : 896 68 : LysLeuLysLeuPheGlyProLeuSerPheCysValMetAlaTyrMetLysTyrTyrSerLe : 88 |||:!!|||:!!.!!|||||||||||| !!! |||.!...! !!!:!..||| !! !|| LysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLe 895 : AAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCT : 833 89 : uMetThrHisAlaAsnAspIleArgGluCysIleLysTyrIleGluTrpAspTrpArgAsnV : 109 |:!! !!.. !!!. !||||||.!.! !.!!!!.:!!!!:||| |||||||||!... uLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrT 832 : GTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGA : 770 110 : alLysTyrSerLysAspArgGluIleMetValAlaAsnAlaLysPheGlyArgArgLeuVal : 129 .!! ...::: :::|||||||||:!! ! !!|||||||||.!!||| ! !!.! hrMetArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAla 769 : CGAtgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCG : 710 130 : LysIleCysMetPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaLeuProIleAr : 150 ! !|||! !.!!|||!!::!!.!!|||.!.:!! |||! !:!! ! ! !!.!!! IleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheTh 709 : ATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCAC : 647 151 : gValGlyArgIleThrValGluGluGlnAsnValThrPheIleProMetValPheProMetT : 171 !..! ! !:!!..!|||! !.!.:!!!.!:!!! !!!. ! !:!! !!!.|||||| rThrMetValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetT 646 : CACGATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGT : 584 172 : hrLysPheMetProAspThrArgHisArgProLeuAsnGluIlePhePheSerIleGlnPhe : 191 !||| :!:! ! ..! ! !.! !!:!!||||||||| !!.!!! ! !|||||| yrLysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPhe 583 : ACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTT : 524 192 : PheGlyGlyIleValIleHisGlyValAlaAlaAlaThrCysSerLeuValAlaAlaLeuAl : 212 .!!..!|||.!!:!! :!! ! !||| !::!..! ||||||..!::!||||||.! LeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuTh 523 : CTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAAC : 461 213 : aValHisAlaCysGlyGlnValLysIleLeuLeuArgTrpLeuGluHisLeuIleGluGlyA : 233 ! !||||||! !||||||:!! :!::!!:!! !! !:!!||| !!!!!:!:...! ! rSerHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspA 460 : ATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATG : 398 234 : rgProAspMetSerLysSerValAsp<->LysArgIleAlaGlyIleValSerGlnHisVal : 252 ! ! !! .!!|||..!! ! !! ! ..!||| !! !||||||..!:!!|||:!! laArgArgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHisLeu 397 : CGAGACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTG : 338 253 : ArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheLeuSerIleThrGl : 262 |||:!:|||{!!} 68 bp {.}|||:!!||| !! !|| ArgValLeu{As}++ ++{n}PheIleSerArgIleGl 337 : AGAGTGTTG{AA}gt.........................ag{C}TTCATATCGCGCATAGA : 240 263 : uMetAlaMetArgGlnIleSerPheValGluPheThrGlyCysThrLeuAsnLeuCysLeuL : 283 | !!!:!.!:!! !!!|||:!!|||!!.||| !!||||||:!! !:!!|||:!!| uAlaMetIleAsnLysAlaCysPheLeuGluLeuThrArgCysThrIleAlaIleCysValL 239 : GGCAATGATAAACAAAGCGTGTTTCCTGGAGTTAACGAGGTGCACGATAGCTATATGCGTAC : 177 284 : euGlyTyrTyrAlaIleMet : 289 ||||||||||| !.!!||| euGlyTyrTyrIlePheMet 176 : TTGGATATTATATATTCATG : 157 vulgar: Lalb_14632 5 289 . LHQN01028641.1 1073 156 - 420 M 20 60 G 2 0 M 214 642 G 0 3 M 14 42 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 157 1073 420 - . gene_id 1 ; sequence Lalb_14632 ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1073 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1073 . - . insertions 3 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 157 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 157 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 157 1073 420 - . alignment_id 1 ; Query Lalb_14632 ; Align 1074 6 60 ; Align 1014 28 642 ; Align 369 242 42 ; Align 256 257 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14633 [mRNA] [translate_table: standard] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 261 Query range: 32 -> 275 Target range: 956 -> 156 33 : ThrLeuValIlePheIleProPheGlyLeuPheGlyIlePheGluValGluGlyAlaTyrAsnL : 54 ..!||| !!! .!.||||||! !..!||| !! !!!:.!.||| !||| ! !|||!..| ValLeuPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrL 956 : GTACTATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGA : 893 55 : ysLeuLysLeuPheGlyProThrSerTyrPheLeuMetValTyrMetLysTyrPheAsnLeuIl : 75 ||:!!|||:!!.!!|||||| !|||:!!!:::!!.!. ! !!!:!..||| !! |||:! ysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLe 892 : AAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTT : 830 76 : eAsnLysIleSerHisPheArgThrCysValGluGlnIleGluSerAspTrpLysAsnMetSer : 96 : ::! !!.! !.!.||| !! ! !!.!.!!.!!:|||!!!||||||!:!!..! !! uLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMet 829 : GCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtg : 767 97 : TyrSerGluAspArgAspIleMetValGluSerAlaIleSerGlyArgArgLeuValLysIleC : 118 ...||| ::::::||||||:!!:!!! !|||! !! !.!!||| ! !!.!! !| ArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerC 766 : agaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTT : 701 119 : ysCysPheLeuSerTyrIleGlyPheValPheTyrTyrValAlaIleProIleThrThrGlyAr : 139 || .!!!!!! !:!! !|||.!.:!! |||! !||| !! ! !!.!!|||||| ! ysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetVa 700 : GTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGT : 638 140 : gValThrAspProIleHisAsnLeuSerPheValProThrSerPheProValAlaGlnIleVal : 160 !|||..!! ! !! !.!.!.!:!!! !!!. ! ! ! !!!!.|||:!! !:!! :!! lValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeu 637 : TGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTC : 575 161 : AlaAspIleArgTyrSerProValAsnGluIlePheLeuAlaGlyGlnValLeuGlyGlyPheV : 182 ! :!! ! !:! !!:!!||||||||| !!||| !..!||| !!|||..!||||||: LeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheI 574 : CTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTA : 509 183 : alValHisGlyIleAlaValGlyAlaCysThrTyrAlaAlaValPheAlaValHisAlaCysGl : 203 !!!.!:!! !! !|||:!!.!!!.! !:! !.!!::!!.!.!..!! !||||||! !|| leAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGl 508 : TAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGG : 446 204 : yGlnVal<->LysIleLeuLeuSerTrpLeuGluHisLeuThrGlyGlyArgThrAspMetSer : 223 ||||:!! !:!!:!!|||||| !!!: !:!!!:!! !!.!||| ! !!.! yGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLys 445 : CCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAG : 383 224 : GluSerValAspAspArgIleAlaSerIleValSerGlnHisValArgIleLeu{Ly} >>>> : 242 !!:..! ! !|||..!||| !!!!!||||||..!:!!|||:!!|||:!:|||{!!} AspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeu{As}++ 382 : GACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG{AA}gt.... : 322 243 : Target Intron 1 >>>> {s}PheLeuSerAlaAlaGluGluAlaLeuGlnGlnValSe : 255 68 bp {.}|||:!!||| ! !|||! ! !:!!.!.:!!!.!!! ++{n}PheIleSerArgIleGluAlaMetIleAsnLysAlaCy 321 : .....................ag{C}TTCATATCGCGCATAGAGGCAATGATAAACAAAGCGTG : 219 256 : rPheValGluPheIleGlyCysThrLeuAsnLeuCysPheLeuGlyTyrTyrIleLeuMet : 275 !|||:!!|||!!.! !!||||||:!! !:!!||| ! |||||||||||||||!!!||| sPheLeuGluLeuThrArgCysThrIleAlaIleCysValLeuGlyTyrTyrIlePheMet 218 : TTTCCTGGAGTTAACGAGGTGCACGATAGCTATATGCGTACTTGGATATTATATATTCATG : 157 vulgar: Lalb_14633 32 275 . LHQN01028641.1 956 156 - 261 M 173 519 G 0 3 M 36 108 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 157 956 261 - . gene_id 1 ; sequence Lalb_14633 ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 956 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 956 . - . insertions 3 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 157 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 157 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 157 956 261 - . alignment_id 1 ; Query Lalb_14633 ; Align 957 33 519 ; Align 435 206 108 ; Align 256 243 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 267 Query range: 20 -> 255 Target range: 1091 -> 389 21 : AsnTyrLysSerAspValAsnTyrThrLeuGluMetCysArgTrpValThrLysProIleGl : 41 ||| ! :!!..! !:!!|||!:!|||:!! ! !||||||!.!! !||| !||||| AsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGl 1091 : AATATAACTGCTAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGG : 1031 42 : yValTrpProPheValTyrSerArgThrSerLysLeuGluLysLeuMetSerIleValLeuL : 62 |!.!|||||| ..! !:!!|||!!.||||||!:!:!!!!:||| !:!!||| yAlaTrpPro---------GlnSerSerSerAsnLeuGluArgIleIleSerArgIleLeuA 1030 : CGCATGGCCA---------CAGTCCTCGTCGAATCTCGAGAGAATCATCTCTCGAATATTGA : 977 63 : euThrValCysPheSerAspLeuLeuPheSerIleIleProProGlyHisTyrValIlePhe : 82 !..!:!!|||!:!!!!! :!!||||||!!!||||||||| !..!! :!!|||!!:.!. snValIleCysTyrThrAlaValLeuPheThrIleIleProCysSerLeuHisValMetLeu 976 : ACGTGATCTGCTACACCGCAGTACTATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTG : 917 83 : ValGluLysAsnValTyrValIleValLysLeuLeuCysProIleAlaPheGlySerSerSe : 103 ! !:!!:!!!.! !!|||..!! !||||||:!!||| !!|||:!:::! ! !! !! !!! GluLysGluThrPheTyrThrLysValLysIleLeuGlyProLeuSerHisTrpValPheCy 916 : GAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTG : 854 104 : rAlaIleLysTyrLeuTyrLeuValPheLysGlyAsnValPheLysArgCysLeuValHisV : 124 ! !|||!..||| ! |||:!!.!.::! !!!!...!.!.:::!.!! !!!! !|||: sIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisM 853 : TATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATA : 791 125 : alGluArgAspTrpLysThrValValAspGlnArgTyrArgArgIleMetValArgGlnSer : 144 !!|||! !||||||!:!|||..!::: :::... :::...||||||:!!!:! ! :!! etGluThrAspTrpArgThrThrMetArgLysGluLysLysGluIleMetLeuLysTyrAla 790 : TGGAGACCGATTGGAGAACGACGAtgagaaaggagaagaaagaaataatgcTGAAGTACGCG : 731 145 : SerValSerArgGlnLeuIleValLeuCysValIlePheLeuTyrSerAlaGlyMetSerTy : 165 !.! !!|||||| ! ! :!!! !|||..!||||||:!!:!!.!!!.! !:!:.!!|| LysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTy 730 : AAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATA : 668 166 : rGlnThrIleMetProPheValSerLysProLysMetArgGlyAsnGlnThr<-><->LeuA : 184 | ..!!!:! !!|||..!!!!! ! ! :!! !||||||:!!||| |||| rCysValMetThrAlaPheThrThrMetValValValValGlyAsnGluThrMetIleLeuA 667 : TTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGC : 605 185 : rgProLeuIleTyrProGlyTyrAspAlaPhePheAspSerGlnAlaSerProThrTyrGlu : 204 || !||| ! ||| !||| ! !.!.!!.!! !.!..!!!:! !!! ! !!||| rgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnGlu 604 : GCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAG : 545 205 : IleIlePheSerMetLeuCysPheSerGlyPheIleArgTyrSerIleThrThrSerAlaTy : 225 |||:!!.!!! ! ! !! !.!!|||||||||||| ! !!!!!! !.!!! !|||!.! IleValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIl 544 : ATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTAT : 482 226 : rSerLeuAlaAlaThrPheValThrHisIleCysGlyGlnValGlnIleGlnIleAlaArgL : 246 ||||||.!!::!.!!.!...!:!!||| ! !||||||:!! :!: !!: ! !: eSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuGlyValValMetLeuSerI 481 : AAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGA : 419 247 : euGluAsnLeuAlaAlaSerSerGlnArg : 255 !!|||:!!!!!!.!::!..!:!!::!||| leGluAspPheValSerAspAlaArgArg 418 : TCGAAGATTTTGTGAGTGATGCGAGACGC : 390 vulgar: Lalb_14621 20 255 . LHQN01028641.1 1091 389 - 267 M 24 72 G 3 0 M 135 405 G 0 6 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 390 1091 267 - . gene_id 1 ; sequence Lalb_14621 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 390 1091 . - . LHQN01028641.1 exonerate:protein2genome:local exon 390 1091 . - . insertions 6 ; deletions 3 LHQN01028641.1 exonerate:protein2genome:local similarity 390 1091 267 - . alignment_id 1 ; Query Lalb_14621 ; Align 1092 21 72 ; Align 1020 48 405 ; Align 609 183 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 220 Query range: 2 -> 250 Target range: 1073 -> 323 3 : AsnTyrThrLeuGluMetCysArgTrpLeuLeuLysIleLeuGlyValTrpThrLeuValTy : 23 :!!|||!:!|||:!! ! !|||||| !:!!|||! !:!!|||!.!||| !! AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpPro-------- 1073 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCA-------- : 1019 24 : rHisArgIleSerLysSerAspArgAlaLeuCysThrAlaThrLeuAlaThrCysIleGlyI : 44 !!. ! |||!!. !!!:||| !:!!! ! ! ! ! !!.!! !||| ! ! -GlnSerSerSerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrA 1018 : -CAGTCCTCGTCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCG : 959 45 : leLeuSerPheThrIleLeuProSerLeuTyrSerValIlePheThrLysAsnSerThrAsp : 64 !:!! !|||||||||:!!|||!!!! ! !|||!!:.!. !|||.!.!!! ! !! laValLeuPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyr 958 : CAGTACTATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTAC : 899 65 : ThrIleIleLysLeuLeuGlyProValGlyLeuCysSerPheCysThrValLysTyrMetTy : 85 |||! !:!:|||:!!|||||||||:!!.!!! !!! !||||||! !:!!!..|||! ThrLysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMe 898 : ACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCAT : 836 86 : rLeuIleLeuLysGlyLysSerLeuGlyArgCysValGlnHisLeuGluArgAspTrpGluM : 106 |||:!:|||::! !!|||!!!:!! !!!.!! ! !!.!.|||:!!|||! !||||||..!! tLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgT 835 : GCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAA : 773 107 : etValThrHisProGlyHisArgSerIleMetLeuLysTyrSerSerIleSerArgLysLeu : 126 !..!! ... :::...|||||||||||||||:!!!.!.!!|||||| ! ! hrThrMetArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAla 772 : CGACGAtgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCG : 713 127 : IleValLeuCysValValPheLeuTyrSerGlyGlyLeuSerTyrHisThrValLysGlnLe : 147 :!!! !|||..!:!!|||:!!:!!.!!||| !|||.!!||| !..!:!!! ! !!! AlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPh 712 : GCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTT : 650 148 : uIleThrLysAspGluSerThrLeuAsnSerThrGlu<-><->ArgProPheValTyrProC : 166 !! !|||! !! !! !..! !|||..!||| ! ||| !.!. !! ||| eThrThrMetValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProM 649 : CACCACGATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAA : 587 167 : ysPheGluPheIleAsnPro<->GlnAlaSerProAsnTyrGluIleIlePhePheValHis : 185 !:!:!! :!! !||| .!..!!!:! !!! !!||||||:!!.!!!!. !!!. etTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGln 586 : TGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAG : 527 186 : CysLeuSerGlyLeuIleGlnTyrThrIleThrSerAlaMetTyrSerLeuAlaAlaIlePh : 206 ! !|||||||||!!!||| ! !!|||! !.!!! !::!:!: ||||||.!!::! !.! PheLeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLe 526 : TTTCTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCT : 464 207 : eValThrHisIleCysGlyArgIleGluIleGlnIleSerArgLeuAspGluLeuIleGluG : 227 ...!:!!||| ! !|||!:!:!:! :!: !!:! ! !:!!!!:!!:!!!:!:...! uThrSerHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerA 463 : AACATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTG : 401 228 : lySerGluGlu<-><->LysProIlePheTyrAspArgLeuGlyIleIleIleGlnGluHis : 245 !:!!..!... ||| ! ! !!:!|||..!:!! !! !|||:!::!!:!!||| spAlaArgArgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHis 400 : ATGCGAGACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACAT : 341 246 : AlaGluValLeuArg : 250 !..!||||||!:! LeuArgValLeuLys 340 : TTGAGAGTGTTGAAG : 324 vulgar: Lalb_14625 2 250 . LHQN01028641.1 1073 323 - 220 M 18 54 G 3 0 M 136 408 G 0 6 M 13 39 G 0 3 M 58 174 G 0 6 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 324 1073 220 - . gene_id 1 ; sequence Lalb_14625 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 324 1073 . - . LHQN01028641.1 exonerate:protein2genome:local exon 324 1073 . - . insertions 15 ; deletions 3 LHQN01028641.1 exonerate:protein2genome:local similarity 324 1073 220 - . alignment_id 1 ; Query Lalb_14625 ; Align 1074 3 54 ; Align 1020 24 408 ; Align 606 160 39 ; Align 564 173 174 ; Align 384 231 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 402 Query range: 0 -> 261 Target range: 1073 -> 290 1 : AsnTyrSerValGlnValAsnArgTrpPheLeuLysProIleGlyIleTrpProIleGlyPr : 21 :!!||||||:!!||| !||||||||| :!!||| !|||||| !|||||| ! AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpPro------Gl 1073 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCA------CA : 1019 22 : oAspAlaThrArgSerGluArgIlePheSerSerLeuLeuAsnIleAlaCysHisSerLeuV : 42 !..!:!!:!!!.! !|||||||||.!!||| !!:!!||||||:!: !|||:!!!!! !| nSerSerSerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaV 1018 : GTCCTCGTCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAG : 956 43 : alValPheThrPheAlaProCysValMetPheIleLeuPheGluGluThrSerLeuAspAla : 62 ||:!!||||||.!. !|||||| !:!! !:!!:!!.!.|||:!! !!!!!!! !!.!! alLeuPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThr 955 : TACTATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACG : 896 63 : ArgIleGlnAlaIleGlyProMetSerHisTrpLeuMetGlyGluLeuAsnTyrCysCysLe : 83 !:!:!::!! !:!!||||||:!!|||||||||:!!.!. !! :!!!:!||| ! || LysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLe 895 : AAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCT : 833 84 : uSerPheArgThrAsnAspIlePheArgCysIleArgHisMetLysThrAspTrpLysThrI : 104 |! !.!.||| !!!. !||| !!.!! !.!!!.!||||||:!!|||||||||!:!|||! uLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrT 832 : GTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGA : 770 105 : leGluLysSerSerAspArgGluLeuMetLeuLysAspAlaLysValGlyArgSerIleAla : 124 :::...... :::|||:::||||||||| !!|||||| !!.!!|||! ! ||| hrMetArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAla 769 : CGAtgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCG : 710 125 : ThrIleAlaAlaValCysMetAsnLeuGlyValPheSerTyrAsnPheValThrGlyPheGl : 145 ! ! !..!.!!:!!! !!!::!! !|||:!!.!!.!!||| ! !!:!!|||!.!||| IleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheTh 709 : ATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCAC : 647 146 : nLysLeuGluPheHisValGlyAsnAspThrTyrSerMetLeuArgLeuProCysProPheT : 166 ! !:!!! !! |||||||||!!:||| ! !:!!! ! !||||||! |||.!.| rThrMetValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetT 646 : CACGATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGT : 584 167 : yrSerAsnLeuMetAspValArgHisSerProAlaAsnGluIleValTyrPheLeuGlnLeu : 186 ||!.!...|||:!: ||| ! !:! !! !|||||||||||| !!!.! !|||!!! yrLysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPhe 583 : ACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTT : 524 187 : LeuSerGlyLeuIleValAsnSerValThrValGlyAlaCysGlyMetAlaGlyValPheAl : 207 |||||||||!!!|||!.!|||!!! !.!!:!!.!!!.! .!!:!:.!!.!!!.!.!..! LeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuTh 523 : CTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAAC : 461 208 : aMetHisAlaCysGlyGlnLeuAsnValIleThrSerGlnLeuAsnAsnLeuValThrProA : 228 ! ||||||! !|||||||||..!|||:!!! !! !..!:!!.!.:!!!!!|||!:! ! rSerHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspA 460 : ATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATG : 398 229 : snGluGluGlnThrPheAlaLys<-><->LysLysLeuThrSerIleValGluArgHisLeu : 246 ..!...::! ! ! ! ! ! :!!:!! !!!!!|||||||||!:!|||||| laArgArgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHisLeu 397 : CGAGACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTG : 338 247 : ArgThrLeuAsnPheValTrpTyrIleGluLysIleMetHisMet : 261 |||..!|||!!.! |||!! ! :!:!!: !|||:!!! ||| ArgValLeuLys***ValCysLeuLeuAspLeuIleLeuProMet 337 : AGAGTGTTGAAGTAAGTATGTTTGTTGGATTTGATTTTGCCGATG : 291 vulgar: Lalb_14627 0 261 . LHQN01028641.1 1073 290 - 402 M 18 54 G 2 0 M 215 645 G 0 6 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 291 1073 402 - . gene_id 1 ; sequence Lalb_14627 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 291 1073 . - . LHQN01028641.1 exonerate:protein2genome:local exon 291 1073 . - . insertions 6 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local similarity 291 1073 402 - . alignment_id 1 ; Query Lalb_14627 ; Align 1074 1 54 ; Align 1020 21 645 ; Align 369 236 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 261 Query range: 24 -> 243 Target range: 1070 -> 410 25 : TyrIlePheLysHisSerArgTrpIleLeuAsnSerIleGlyIleTrpProSerPheLeuLy : 45 |||! !.!!:!! !:!|||||| :!!!!.||||||||| !||||||..!! !! !.. TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSerSe 1070 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCGTC : 1010 46 : sAsnAsnAsnGlnPheGlnGlnAsnPheSerValGlyLeuCysAsnIleValLeuLeuPheA : 66 !||| !.!.::!.!! .......!.! ! !! !:!!||| !!! !!.!:!!||||||. rAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheT 1009 : GAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCA : 947 67 : laIleLeuProPheThrLeuTyrLeuAlaValGluGluLysAsnLeuMetIleArgValLys : 86 !!|||:!!|||! !:!!|||:!!:!! !:!!|||:!!:!!!.!!!! ! !:!|||||| hrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLys 946 : CGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAA : 887 87 : LeuPheGlyPheLeuSerPheCysTrpIleCysLeuLeuLysTyrTrpValLeuIleAlaCy : 107 :!!.!!||| |||||| !!! !.!!|||:!!:!!!..||| :!!|||:!: ! ! IleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuAr 886 : ATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCG : 824 108 : sLysProAsnLeuLysAsnCysIleGluTyrValGlnHisAspTrpArgGluValGluGlnA : 128 ::: !!.!:!!::::!!! !.!!.!.:!!:!!:!! !||||||||| !..! :::: gArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgL 823 : ACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaa : 761 129 : rgGluAspArgGluValMetLeuLysTyrGlyAsnValGlyArgAsnLeuThrLeuLeuCys : 148 ::||| :::|||:::||||||||||||!.!!!. !!.!!||| !! !.!!:!!! !||| ysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCys 760 : aggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGT : 701 149 : ValValPheMetSerSerGlyGlyPheMetTyrHisThrIleAlaGlnTyr<->AlaIleGl : 168 ..!:!!|||!!: !.!!||| !.!! ||| !..!!!:.!! !!:! .!!!!:! ThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetVa 700 : ACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGT : 638 169 : ySerHisValAsnGluGlnAsnArgThrIleLysProLeuValTyrProThrTyrSerArgL : 189 ! ! |||....!.:!!!.!! !! !:!:::: !||| !! |||! !|||!.! !!| lValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyL 637 : TGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGC : 575 190 : euPheAspProGlnProArgProPheTyrGluLeuValTyrValIleHisSerLeuAsnGly : 209 ||.!! !.!. !!!.! !!.!. !!|||:!!||| !:!! !!!.! !|||::!||| euLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGly 574 : TCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGA : 515 210 : TyrIleLeuSerAlaIleThrMetGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisIl : 230 !:!||| !!:!.!!! !.!!!!:.!!!.! .!!|||.!!::! !.!..!!:!!||| PheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAl 514 : TTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGC : 452 231 : eCysGlyGlnIleAspIleMetIleLeuArgLeuGlnAsn : 243 ! !||||||:!:! !:!::!:!!:||| !:!!:!!:!! aSerGlyGlnLeuGlyValValMetLeuSerIleGluAsp 451 : GTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGAT : 411 vulgar: Lalb_14622 24 243 . LHQN01028641.1 1070 410 - 261 M 141 423 G 0 3 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 411 1070 261 - . gene_id 1 ; sequence Lalb_14622 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 411 1070 . - . LHQN01028641.1 exonerate:protein2genome:local exon 411 1070 . - . insertions 3 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 411 1070 261 - . alignment_id 1 ; Query Lalb_14622 ; Align 1071 25 423 ; Align 645 166 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14632 [mRNA] [translate_table: standard] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 248 Query range: 5 -> 145 Target range: 426 -> 840 6 : AsnLeuSerIleGlnTrpAsnArgTrpIleLeuArgProMetGlyValTrpProSerSerGlyT : 27 :!!! !|||:!!||||||||||||||| :!!!:! !!!:|||..!||||||..! AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGln------P 427 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAG------T : 484 28 : hrAspSerGlyPheGluLysCysSerAsnArgLeuMetAsnLeuValCysTyrSerLeuIleSe : 48 !...|||..!.!!|||!:! !! !::!|||:!!:!:|||:!!:!!||||||!!! !||| heSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLe 485 : TCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACT : 547 49 : rPheLeuPheValProCysTrpLeuPheMetMetLeuGluValGluAsnLeuTyrAspLysLeu : 69 !|||! !.!.:!!||||||! !||| !:!:||||||||| !! !!.!!!!||| |||:!! uPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysVal 548 : ATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTG : 610 70 : LysLeuPheGlyProLeuSerPheCysValMetAlaTyrMetLysTyrTyrSerLeuMetThrH : 91 |||:!!.!!||| !!|||||| !!! |||.!...! !!!:!..||| !! !|||:!! !! LysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuA 611 : AAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGC : 676 92 : isAlaAsnAspIleArgGluCysIleLysTyrIleGluTrpAspTrpArgAsnValLysTyrSe : 112 .. !!!. !|||!.!.!.! !:!!!!.:!!!!:||| |||||||||!....! .. rgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLy 677 : GACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaa : 739 113 : rLysAspArgGluIleMetValAlaAsnAlaLysPheGlyArgArgLeuValLysIleCysMet : 133 .::: :::|||:::|||:!! ! !!|||||||||.!!||| ! !!.!! .!!||| ! sGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAla 740 : ggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCG : 802 134 : PhePheMetTyrSerGlyPheValPheTyrTyrIle : 145 .!!|||!!::!!.!!|||.!.:!! |||! !:!! IlePheIleHisGlyGlyIleLeuGlyTyrCysVal 803 : ATTTTCATACACGGTGGTATACTTGGATATTGTGTT : 840 vulgar: Lalb_14632 5 145 . LHQN01028951.1 426 840 + 248 M 19 57 G 2 0 M 119 357 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 427 840 248 + . gene_id 1 ; sequence Lalb_14632 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 427 840 . + . LHQN01028951.1 exonerate:protein2genome:local exon 427 840 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 427 840 248 + . alignment_id 1 ; Query Lalb_14632 ; Align 427 6 57 ; Align 484 27 357 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14621 [mRNA] [translate_table: standard] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 20 -> 165 Target range: 408 -> 834 21 : AsnTyrLysSerAspValAsnTyrThrLeuGluMetCysArgTrpValThrLysProIleGlyV : 42 ||| ! :!!..! !:!!|||!:!|||:!! ! !||||||!.!! !||| !||||||. AsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyT 409 : AATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCA : 472 43 : alTrpProPheValTyrSerArgThrSerLysLeuGluLysLeuMetSerIleValLeuLeuTh : 63 .!|||||| ..! !:!!|||!!.||||||!:! !!!:||| !:!!||| !.. hrTrpPro---------GlnPheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnVa 473 : CATGGCCA---------CAGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGT : 526 64 : rValCysPheSerAspLeuLeuPheSerIleIleProProGlyHisTyrValIlePheValGlu : 84 !:!!|||!:!!!!! :!!|||||||||||||||||| !..! :!!:!!!!:.!.! !:!! lIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLys 527 : GATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAA : 589 85 : LysAsnValTyrValIleValLysLeuLeuCysProIleAlaPheGlySerSerSerAlaIleL : 106 !!.! !!|||..!! !||||||:!!||| !! !!:!:::! ! !! !! !!!! !|||! GlyThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleS 590 : GGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCA : 655 107 : ysTyrLeuTyrLeuValPheLysGlyAsnValPheLysArgCysLeuValHisValGluArgAs : 127 ..||| ! |||:!!.!.::! !!!!...!.!. ! !.!! !:!! !|||:!!|||! !|| erTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPheValAsnHisMetGluThrAs 656 : GTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGA : 718 128 : pTrpLysThrValValAspGlnArgTyrArgArgIleMetValArgGlnSerSerValSerArg : 148 ||||!:!|||..!... :::... :::...:::|||:!!!:! ! :!!!.! !!|||||| pTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArg 719 : TTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGA : 781 149 : GlnLeuIleValLeuCysValIlePheLeuTyrSerAlaGlyMetSerTyr : 165 ! ! :!!!!!|||!.!||||||:!!:!!.!!!.! !:!:.!!||| TyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleLeuGlyTyr 782 : TACGCGGCGATTTTTTGTGCGATTTTCATACACGGTGGTATACTTGGATAT : 834 vulgar: Lalb_14621 20 165 . LHQN01028951.1 408 834 + 183 M 24 72 G 3 0 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 409 834 183 + . gene_id 1 ; sequence Lalb_14621 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 409 834 . + . LHQN01028951.1 exonerate:protein2genome:local exon 409 834 . + . insertions 0 ; deletions 3 LHQN01028951.1 exonerate:protein2genome:local similarity 409 834 183 + . alignment_id 1 ; Query Lalb_14621 ; Align 409 21 72 ; Align 481 48 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14619 [mRNA] [translate_table: standard] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 9 -> 140 Target range: 429 -> 822 10 : TyrIlePheLysIleIleArgTrpIleLeuAsnSerLeuGlyIleTrpProSerLeuPheGluA : 31 |||! !.!!:!! ! !|||||| :!!!!.|||:!!|||! !||||||..!!!!! ..!| TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerA 430 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGA : 493 32 : snSerAsnGlnPheGlnGlnAsnValSerIleGlyLeuCysAsnValValLeuLeuPheAlaIl : 52 || !.!.::! ! ......:!!! !! !! !:!!||| !!..!!.!:!!||||||:!!|| snLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIl 494 : ACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGAT : 556 53 : eValProPheThrLeuHisLeuThrValGluGluLysSerTrpLysAlaArgValLysLeuIle : 73 |:!!|||! !:!!|||||||||! !:!!|||:!! !!!!!:: ! .!!!:!||||||:!!:!! eIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeu 557 : AATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTC : 619 74 : GlyLeuLeuThrPheCysTrpIleSerLeuPheLysTyrTrpSerLeuValSerCysLysProA : 95 |||! !|||!:! !!! !.!!!!!:!!.!!!..||| ! !|||:!! ! ! ::: !! GlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysT 620 : GGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAA : 685 96 : snLeuLysTyrCysIleGluPheIleGlnHisAspTrpArgGluValGluHisSerGluAspAr : 116 .!:!! ! :!!! !:!!.!. !!!::!! !||||||||| !..! ......||| :: hrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLy 686 : CCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaa : 748 117 : gGluLeuMetLeuLysTyrGlyAsnValGlyArgAsnLeuThrIleLeuCysLeuValPheMet : 137 :|||:::||||||||||||!.!!!. !!.!!||| !! !.!!|||!!!||| !:!!|||!!: sGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIle 749 : agaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATA : 811 138 : TyrSerGly : 140 :!!.!!||| HisGlyGly 812 : CACGGTGGT : 822 vulgar: Lalb_14619 9 140 . LHQN01028951.1 429 822 + 205 M 131 393 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 430 822 205 + . gene_id 1 ; sequence Lalb_14619 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 430 822 . + . LHQN01028951.1 exonerate:protein2genome:local exon 430 822 . + . insertions 0 ; deletions 0 LHQN01028951.1 exonerate:protein2genome:local similarity 430 822 205 + . alignment_id 1 ; Query Lalb_14619 ; Align 430 10 393 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 248 Query range: 0 -> 142 Target range: 426 -> 846 1 : AsnTyrSerValGlnValAsnArgTrpPheLeuLysProIleGlyIleTrpProIleGlyProA : 22 :!!||||||:!!||| !||||||||| :!!||| !||||||! !|||||| ! ! AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpPro------GlnP 427 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCA------CAGT : 484 23 : spAlaThrArgSerGluArgIlePheSerSerLeuLeuAsnIleAlaCysHisSerLeuValVa : 43 !:!!:!!!.! !||||||! !.!!||| !!:!!||||||:!: !|||:!!!!! !:!!:! heSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLe 485 : TCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACT : 547 44 : lPheThrPheAlaProCysValMetPheIleLeuPheGluGluThrSerLeuAspAlaArgIle : 64 !|||:!!.!. !|||||| !:!! !:!!:!!.!.|||:!! !!!!!!! !!.!!!:!:!: uPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysVal 548 : ATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTG : 610 65 : GlnAlaIleGlyProMetSerHisTrpLeuMetGlyGluLeuAsnTyrCysCysLeuSerPheA : 86 :!! !:!!||| !!:!!|||||||||:!!.!. !! :!!!:!||| ! |||! !.!.| LysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuA 611 : AAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGC : 676 87 : rgThrAsnAspIlePheArgCysIleArgHisMetLysThrAspTrpLysThrIleGluLysSe : 107 || !!!. !||| !!.!! !:!!!.!||||||:!!|||||||||!:!|||! :::.. rgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLy 677 : GACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaa : 739 108 : rSerAspArgGluLeuMetLeuLysAspAlaLysValGlyArgSerIleAlaThrIleAlaAla : 128 .... :::|||:::||||||||| !!|||||| !!.!!|||! ! |||! !.!!..!||| sGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAla 740 : ggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCG : 802 129 : ValCysMetAsnLeuGlyValPheSerTyrAsnPheValThr : 142 :!!! !!!::!! !|||:!!.!!.!!||| ! !!:!!||| IlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThr 803 : ATTTTCATACACGGTGGTATACTTGGATATTGTGTTATGACA : 846 vulgar: Lalb_14627 0 142 . LHQN01028951.1 426 846 + 248 M 18 54 G 2 0 M 122 366 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 427 846 248 + . gene_id 1 ; sequence Lalb_14627 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 427 846 . + . LHQN01028951.1 exonerate:protein2genome:local exon 427 846 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 427 846 248 + . alignment_id 1 ; Query Lalb_14627 ; Align 427 1 54 ; Align 481 21 366 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14622 [mRNA] [translate_table: standard] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 225 Query range: 24 -> 155 Target range: 429 -> 822 25 : TyrIlePheLysHisSerArgTrpIleLeuAsnSerIleGlyIleTrpProSerPheLeuLysA : 46 |||! !.!!:!! !:!|||||| :!!!!.|||||||||! !||||||..!|||! !..!| TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerA 430 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGA : 493 47 : snAsnAsnGlnPheGlnGlnAsnPheSerValGlyLeuCysAsnIleValLeuLeuPheAlaIl : 67 || !.!.::! ! .......!.! ! !! !:!!||| !!! !!.!:!!||||||:!!|| snLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIl 494 : ACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGAT : 556 68 : eLeuProPheThrLeuTyrLeuAlaValGluGluLysAsnLeuMetIleArgValLysLeuPhe : 88 |:!!|||! !:!!|||:!!||| !:!!|||:!! !!.!!!! ! !:!||||||:!!.!! eIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeu 557 : AATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTC : 619 89 : GlyPheLeuSerPheCysTrpIleCysLeuLeuLysTyrTrpValLeuIleAlaCysLysProA : 110 |||! |||||| !!! !.!!|||:!!:!!!..||| :!!|||:!: ! ! ::: !! GlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysT 620 : GGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAA : 685 111 : snLeuLysAsnCysIleGluTyrValGlnHisAspTrpArgGluValGluGlnArgGluAspAr : 131 .!:!! ! :!!! !:!!.!.:!!:!!:!! !||||||||| !..! ::::::||| :: hrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLy 686 : CCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaa : 748 132 : gGluValMetLeuLysTyrGlyAsnValGlyArgAsnLeuThrLeuLeuCysValValPheMet : 152 :||||||||||||||||||!.!!!. !!.!!||| !! !.!!:!!!!!|||!.!:!!|||!!: sGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIle 749 : agaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATA : 811 153 : SerSerGly : 155 !.!!||| HisGlyGly 812 : CACGGTGGT : 822 vulgar: Lalb_14622 24 155 . LHQN01028951.1 429 822 + 225 M 131 393 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 430 822 225 + . gene_id 1 ; sequence Lalb_14622 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 430 822 . + . LHQN01028951.1 exonerate:protein2genome:local exon 430 822 . + . insertions 0 ; deletions 0 LHQN01028951.1 exonerate:protein2genome:local similarity 430 822 225 + . alignment_id 1 ; Query Lalb_14622 ; Align 430 25 393 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14625 [mRNA] [translate_table: standard] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 189 Query range: 2 -> 141 Target range: 426 -> 834 3 : AsnTyrThrLeuGluMetCysArgTrpLeuLeuLysIleLeuGlyValTrpThrLeuValTyrH : 24 :!!|||!:!|||:!! ! !|||||| !:!!|||! !:!!|||..!||| !! ! AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpPro---------G 427 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCA---------C : 481 25 : isArgIleSerLysSerAspArgAlaLeuCysThrAlaThrLeuAlaThrCysIleGlyIleLe : 45 !. ! |||!!. !!!:||| !:!!! ! ! ! ! !!.!! !||| ! ! !:! lnPheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIl 482 : AGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAAT : 544 46 : uSerPheThrIleLeuProSerLeuTyrSerValIlePheThrLysAsnSerThrAspThrIle : 66 ! !|||:!!|||:!!|||!!!! !! !:!!!!:.!. !|||...!!! ! !!|||! ! eLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLys 545 : ACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAA : 607 67 : IleLysLeuLeuGlyProValGlyLeuCysSerPheCysThrValLysTyrMetTyrLeuIleL : 88 :!:|||:!!|||||| !!:!!.!!! !!! !||||||! !:!!!..|||! |||:!:| ValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuL 608 : GTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGC : 673 89 : euLysGlyLysSerLeuGlyArgCysValGlnHisLeuGluArgAspTrpGluMetValThrHi : 109 ||::! !!|||!!!:!! !!.!! !|||.!.|||:!!|||! !||||||..!! !..!|||.. euArgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrAr 674 : TGCGACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgag : 736 110 : sProGlyHisArgSerIleMetLeuLysTyrSerSerIleSerArgLysLeuIleValLeuCys : 130 . :::...:::||||||||||||:!!!.!.!!|||||| ! ! :!!!!!||| gLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCys 737 : aaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGT : 799 131 : ValValPheLeuTyrSerGlyGlyLeuSerTyr : 141 !.!:!!|||:!!:!!.!!||| !|||.!!||| AlaIlePheIleHisGlyGlyIleLeuGlyTyr 800 : GCGATTTTCATACACGGTGGTATACTTGGATAT : 834 vulgar: Lalb_14625 2 141 . LHQN01028951.1 426 834 + 189 M 18 54 G 3 0 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 427 834 189 + . gene_id 1 ; sequence Lalb_14625 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 427 834 . + . LHQN01028951.1 exonerate:protein2genome:local exon 427 834 . + . insertions 0 ; deletions 3 LHQN01028951.1 exonerate:protein2genome:local similarity 427 834 189 + . alignment_id 1 ; Query Lalb_14625 ; Align 427 3 54 ; Align 481 24 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 144 Query range: 316 -> 372 Target range: 209 -> 35 317 : GlnCysLeuGlnValGlyGluLysAlaTyrMetThrGlnTrpTyrArgLeuProHisLysThrA : 338 :!! ! !:!!||||||! !|||!.!|||||||||:!!|||||||||||| !!!!.||||||| GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrA 209 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTG : 146 339 : laThrGlyLeuIleLeuLeuIleSerArgSerArgMetValThrArgIleThrAlaGlyLysLe : 359 || !|||!!!:!!:!!:!!||||||||||||!!!||||||! !!:!|||||||||||||||!! laLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPh 145 : CTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATT : 83 360 : uLeu<-><->ProIleSerIleSerThrPheGlyAspValSerIle : 372 !:!! !! ! !:!!:!!||||||||||||||||||||| eValTyr***ThrSerPheValAlaThrPheGlyAspValSerIle 82 : CGTATACTGAACATCGTTTGTCGCAACATTTGGCGATGTGagtatt : 36 vulgar: Lalb_14627 316 372 . LHQN01029187.1 209 35 - 144 M 44 132 G 0 6 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 36 209 144 - . gene_id 1 ; sequence Lalb_14627 ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 36 209 . - . LHQN01029187.1 exonerate:protein2genome:local exon 36 209 . - . insertions 6 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 36 209 144 - . alignment_id 1 ; Query Lalb_14627 ; Align 210 317 132 ; Align 72 361 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14627 [mRNA] [translate_table: standard] Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 300 -> 372 Target range: 79 -> 286 301 : IlePheAsnIlePheIlePheCysTyrIleGlyGluLysLeuThrThrGlnCysLeuGlnValG : 322 ||| !||||||||||||.!!||||||||||||||| |||||| :!!|||| IleAlaAsnIlePheIleLeuCysTyrIleGlyGlu------ThrThr---------LysValG 80 : ATTGCTAATATATTCATACTTTGTTACATCGGAGAG------ACTACC---------AAAGTCG : 128 323 : lyGluLysAlaTyrMetThrGlnTrpTyrArgLeuProHisLysThrAlaThrGlyLeuIleLe : 343 ||! !|||!.!|||||||||:!!|||||||||||| !!!!.||||||||| !||||||:!!:! lyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGlyLeuValMe 129 : GAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGGTTTGGTAAT : 191 344 : uLeuIleSerArgSerArgMetValThrArgIleThrAlaGlyLysLeuLeu<-><->ProIle : 362 !:!!||||||||||||!!!||||||! !!:!|||||||||||||||!!!:!! !! tIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheValTyr***ThrSer 192 : GATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTATACTGAACATCG : 254 363 : SerIleSerThrPheGlyAspValSerIle : 372 |||:!!:!!||||||||||||||||||||| SerValAlaThrPheGlyAspValSerIle 255 : TCTGTCGCAACATTTGGCGATGTGagtatt : 286 vulgar: Lalb_14627 300 372 . LHQN01048470.1 79 286 + 157 M 12 36 G 2 0 M 2 6 G 3 0 M 41 123 G 0 6 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 80 286 157 + . gene_id 1 ; sequence Lalb_14627 ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 80 286 . + . LHQN01048470.1 exonerate:protein2genome:local exon 80 286 . + . insertions 6 ; deletions 5 LHQN01048470.1 exonerate:protein2genome:local similarity 80 286 157 + . alignment_id 1 ; Query Lalb_14627 ; Align 80 301 36 ; Align 116 315 6 ; Align 122 320 123 ; Align 251 361 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14638 [mRNA] [translate_table: standard] Target: LHQN01049708.1 Habropoda laboriosa contig49708, whole genome shotgun sequence Model: protein2genome:local Raw score: 273 Query range: 0 -> 85 Target range: 57 -> 312 1 : MetThrIleArgSerThrValSerLysSerValArgTyrGlyLeuHisPheIleGlyIleTrpP : 22 |||! !:!!|||!:!|||:!!|||:!!||||||!:!!:!||||||||||||:!!|||||||||| MetIleLeuArgAsnThrMetSerGlnSerValLysPheGlyLeuHisPheValGlyIleTrpP 58 : ATGATATTACGAAATACAATGAGCCAATCTGTTAAGTTTGGTCTACATTTTGTCGGTATTTGGC : 121 23 : roAspThrProPheProGlyLeuHisLysPheTyrTrpIleSerThrThrIleIleTrpGlnPh : 43 ||! ||||||||||||.!!|||||||||.!! !|||:!!! !.!!! ! !:!! ||| roGlyThrProPheProSerLeuHisLysIleGlyTrpValIleAlaMetAlaValLeuGlnTh 122 : CAGGAACACCATTCCCAAGTTTACATAAAATTGGTTGGGTCATAGCGATGGCTGTACTTCAAAC : 184 44 : eTyrGlnCysLysTyrMetIleThrHisPheLysThrAspAspLeuThrLysThrIleAspCys : 64 !||||||! !!:!|||!!:|||||||||!:!|||:!!|||..!|||! ! ||||||||| ! rTyrGlnTyrArgTyrIleIleThrHisTyrLysSerAspSerLeuMetValThrIleAspAsn 185 : TTATCAGTACAGATACATCATTACGCATTATAAATCTGATAGTCTTATGGTCACAATAGATAAT : 247 65 : LeuSerMetThrLeuProTyrThrLeuLeuIleAlaLysLeuSerValValTrpIleAsnHis : 85 ||||||!!:|||:!!|||!:!||||||:::::: |||||| :::...||| !|||:!! LeuSerIleThrMetProPheThrLeuValLeuIleLysLeuIleIleThrTrpAlaAsnTyr 248 : TTGAGCATCACCATGCCATTCACTCTagtgttaattaaattaattattacttgGGCAAATTAT : 312 vulgar: Lalb_14638 0 85 . LHQN01049708.1 57 312 + 273 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049708.1 exonerate:protein2genome:local gene 58 312 273 + . gene_id 1 ; sequence Lalb_14638 ; gene_orientation . LHQN01049708.1 exonerate:protein2genome:local cds 58 312 . + . LHQN01049708.1 exonerate:protein2genome:local exon 58 312 . + . insertions 0 ; deletions 0 LHQN01049708.1 exonerate:protein2genome:local similarity 58 312 273 + . alignment_id 1 ; Query Lalb_14638 ; Align 58 1 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14640 [mRNA] [translate_table: standard] Target: LHQN01049708.1 Habropoda laboriosa contig49708, whole genome shotgun sequence Model: protein2genome:local Raw score: 256 Query range: 0 -> 80 Target range: 63 -> 303 1 : PheArgSerThrValSerGlnProValLysTyrGlyLeuTyrPheValGlyIleTrpProGlyT : 22 !!.|||!:!|||:!!|||||| !!||||||!:!||||||:!!|||||||||||||||||||||| LeuArgAsnThrMetSerGlnSerValLysPheGlyLeuHisPheValGlyIleTrpProGlyT 64 : TTACGAAATACAATGAGCCAATCTGTTAAGTTTGGTCTACATTTTGTCGGTATTTGGCCAGGAA : 127 23 : hrProPheProGlyLeuHisLysPhePheTrpValLeuSerThrThrLeuCysGlnIleTyrGl : 43 |||||||||||.!!|||||||||.!! !||||||:!!:!!! !.!!:!! !|||! !||||| hrProPheProSerLeuHisLysIleGlyTrpValIleAlaMetAlaValLeuGlnThrTyrGl 128 : CACCATTCCCAAGTTTACATAAAATTGGTTGGGTCATAGCGATGGCTGTACTTCAAACTTATCA : 190 44 : nTyrLysTyrValIleAlaHisPheAsnThrAspGlyLeuAlaAspMetValAsnCysLeuCys : 64 ||||!:!|||:!!|||.!!|||!:!!!.:!!|||.!!||| !! !! :!!:!! !||| !! nTyrArgTyrIleIleThrHisTyrLysSerAspSerLeuMetValThrIleAspAsnLeuSer 191 : GTACAGATACATCATTACGCATTATAAATCTGATAGTCTTATGGTCACAATAGATAATTTGAGC : 253 65 : PheAlaLeuProTyrThrMetThrMetValLysLeuIleIleValTrp : 80 .!!.!!:!!|||!:!|||:!:...::::::||||||||||||...||| IleThrMetProPheThrLeuValLeuIleLysLeuIleIleThrTrp 254 : ATCACCATGCCATTCACTCTagtgttaattaaattaattattacttgG : 303 vulgar: Lalb_14640 0 80 . LHQN01049708.1 63 303 + 256 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049708.1 exonerate:protein2genome:local gene 64 303 256 + . gene_id 1 ; sequence Lalb_14640 ; gene_orientation . LHQN01049708.1 exonerate:protein2genome:local cds 64 303 . + . LHQN01049708.1 exonerate:protein2genome:local exon 64 303 . + . insertions 0 ; deletions 0 LHQN01049708.1 exonerate:protein2genome:local similarity 64 303 256 + . alignment_id 1 ; Query Lalb_14640 ; Align 64 1 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14640 [mRNA] [translate_table: standard] Target: LHQN01049752.1 Habropoda laboriosa contig49752, whole genome shotgun sequence Model: protein2genome:local Raw score: 287 Query range: 78 -> 197 Target range: 42 -> 399 79 : ValTrpThrTyrHisArgValLeuCysAspIleLeuSerThrMetGluGluAspCysValLysT : 100 :!! !! !!:!|||!!!|||||| !!|||||||||||||||||||||||||||||| !|||| IleThrIlePheHisSerValLeuSerAspIleLeuSerThrMetGluGluAspCysGlnLysT 43 : ATAACGATATTTCACAGCGTACTTAGTGACATTTTATCAACCATGGAAGAGGATTGTCAGAAAT : 106 101 : yrAlaValValAspAlaAsnAsnLeuIleSerLysThrAlaAspLeuSerTyrArgLeuThrSe : 121 |||||!.!|||||| !|||!!.|||!!:|||||||||!.!.!.||||||::: |||||||| yrAlaAlaValAspIleAsnLysLeuMetSerLysThrGlyGlnLeuSerPheTyrLeuThrSe 107 : ATGCTGCTGTAGATATAAATAAGTTGATGTCAAAAACCGGACAgctatctttttatttaacaag : 169 122 : rThrLeuGlyPhePheTyrLeuAlaAlaValSerCysHisSerAlaThrIleLeuAlaIlePro : 142 |! !:!! !! !! |||:!!!.!:!!!.!:!!! !:!!! !.!! !! !:!!!..... rIleIleMetSerSerTyrMetValSerAlaAlaPheTyrIleThrGlyThrIleGlyPheGln 170 : cATTATTATGTCTTCGTATATGGTATCTGCAGCATTTTACATAACTGGTACTATTGgatttcaa : 232 143 : ArgSerAsnAsnThrMetAspGluLysLeuValMetAlaMetAspLeuProPheAspIleSerG : 164 ...:::||| !:!!:!:..!..!:!!|||:!!:!! !|||||||||||||||! ! !|||| GluAsnAsnAlaSerValSerArgGluLeuLeuLeuLysMetAspLeuProPheGlyThrSerG 233 : gaaaataatgCTTCAGTATCTAGGGAGCTCCTTCTGAAAATGGATTTGCCTTTTGGGACCAGCG : 298 165 : luSerProThrTyrGluIleValIleAlaAlaGlnValIleHisLeuThrSerThrAlaTyrTh : 185 ||||||||!.!||||||:!!|||:!!.!!.!!||||||:!! !! !..!|||.!!|||! || luSerProAsnTyrGluLeuValValThrThrGlnValLeuIleHisValSerAlaAlaLeuTh 299 : AATCGCCGAATTACGAACTTGTAGTAACTACACAAGTCCTTATTCACGTATCAGCGGCCTTAAC : 361 186 : rPheGlyLeuPheSerAlaLeuLeuLeuMetMetIle : 197 |||||||:!!|||||||||||||||||||||:!!:!! rPheGlyValPheSerAlaLeuLeuLeuMetValVal 362 : ATTCGGTGTATTCAGTGCTCTTCTCTTAATGGTGGTA : 399 vulgar: Lalb_14640 78 197 . LHQN01049752.1 42 399 + 287 M 119 357 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049752.1 exonerate:protein2genome:local gene 43 399 287 + . gene_id 1 ; sequence Lalb_14640 ; gene_orientation . LHQN01049752.1 exonerate:protein2genome:local cds 43 399 . + . LHQN01049752.1 exonerate:protein2genome:local exon 43 399 . + . insertions 0 ; deletions 0 LHQN01049752.1 exonerate:protein2genome:local similarity 43 399 287 + . alignment_id 1 ; Query Lalb_14640 ; Align 43 79 357 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14641 [mRNA] [translate_table: standard] Target: LHQN01049752.1 Habropoda laboriosa contig49752, whole genome shotgun sequence Model: protein2genome:local Raw score: 291 Query range: 207 -> 320 Target range: 57 -> 396 208 : SerValLeuArgGlnIleLeuSerThrMetGluAspAspCysAlaArgTyrAlaAlaLeuAspL : 229 |||||||||!!!.!.||||||||||||||||||!!:|||||| !!:!|||||||||:!!|||! SerValLeuSerAspIleLeuSerThrMetGluGluAspCysGlnLysTyrAlaAlaValAspI 58 : AGCGTACTTAGTGACATTTTATCAACCATGGAAGAGGATTGTCAGAAATATGCTGCTGTAGATA : 121 230 : ysAsnAsnValIleSerLysThrAlaAspLeuSerPheArgIleThrSerThrIleProAlaLe : 250 !|||!!.:!!!!:|||||||||!.!.!.||||||||| :::||||||! !||| !:!!! leAsnLysLeuMetSerLysThrGlyGlnLeuSerPheTyrLeuThrSerIleIleMetSerSe 122 : TAAATAAGTTGATGTCAAAAACCGGACAgctatctttttatttaacaagcATTATTATGTCTTC : 184 251 : uPheMetIleSerValCysCysAsnAlaValGlySerLeuAlaIleProGlnSerAsnAspSer : 271 !!:!|||:!!|||!.!...! ! !! !..!|||!!!:!!!..... ::::::||| !||| rTyrMetValSerAlaAlaPheTyrIleThrGlyThrIleGlyPheGlnGluAsnAsnAlaSer 185 : GTATATGGTATCTGCAGCATTTTACATAACTGGTACTATTGgatttcaagaaaataatgCTTCA : 247 272 : SerValArgGlnLeuLeuIleAsnMetAspLeuProPheAspThrAsnGlnSerProThrTyrG : 293 ! !|||:!!||||||:!:!!.|||||||||||||||! |||!:!:!!||||||!.!|||| ValSerArgGluLeuLeuLeuLysMetAspLeuProPheGlyThrSerGluSerProAsnTyrG 248 : GTATCTAGGGAGCTCCTTCTGAAAATGGATTTGCCTTTTGGGACCAGCGAATCGCCGAATTACG : 313 294 : luLeuValValAlaAlaGlnIleIleTyrGlnValMetSerAlaTyrThrPheSerIlePheAs : 314 |||||||||||.!!.!!|||:!!:!! !!!.||| :!!|||! ||||||.!!:!!|||!: luLeuValValThrThrGlnValLeuIleHisValSerAlaAlaLeuThrPheGlyValPheSe 314 : AACTTGTAGTAACTACACAAGTCCTTATTCACGTATCAGCGGCCTTAACATTCGGTGTATTCAG : 376 315 : nAlaLeuLeuLeuMetMet : 320 !|||||||||||||||:!! rAlaLeuLeuLeuMetVal 377 : TGCTCTTCTCTTAATGGTG : 396 vulgar: Lalb_14641 207 320 . LHQN01049752.1 57 396 + 291 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049752.1 exonerate:protein2genome:local gene 58 396 291 + . gene_id 1 ; sequence Lalb_14641 ; gene_orientation . LHQN01049752.1 exonerate:protein2genome:local cds 58 396 . + . LHQN01049752.1 exonerate:protein2genome:local exon 58 396 . + . insertions 0 ; deletions 0 LHQN01049752.1 exonerate:protein2genome:local similarity 58 396 291 + . alignment_id 1 ; Query Lalb_14641 ; Align 58 208 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14641 [mRNA] [translate_table: standard] Target: LHQN01049752.1 Habropoda laboriosa contig49752, whole genome shotgun sequence Model: protein2genome:local Raw score: 285 Query range: 359 -> 474 Target range: 54 -> 399 360 : HisGlyValLeuArgGluIleIleSerThrMetGluGluAspCysAlaArgTyrAlaAlaLeuA : 381 |||.!!||||||!!!!!:|||:!!||||||||||||||||||||| !!:!|||||||||:!!| HisSerValLeuSerAspIleLeuSerThrMetGluGluAspCysGlnLysTyrAlaAlaValA 55 : CACAGCGTACTTAGTGACATTTTATCAACCATGGAAGAGGATTGTCAGAAATATGCTGCTGTAG : 118 382 : spLysAsnAsnValIleSerLysThrAlaAspLeuSerPheArgLeuThrSerThrIleProAl : 402 ||! !|||!!.:!!!!:|||||||||!.!.!.||||||||| |||||||||! !||| !:! spIleAsnLysLeuMetSerLysThrGlyGlnLeuSerPheTyrLeuThrSerIleIleMetSe 119 : ATATAAATAAGTTGATGTCAAAAACCGGACAgctatctttttatttaacaagcATTATTATGTC : 181 403 : aLeuPheMetValSerValSerCysAsnAlaValGlyAlaLeuAlaIleSerGlnSerAsnAsp : 423 !! !!:!|||||||||!.!:!!! ! !! !..!|||.!!:!!!........::::::||| ! rSerTyrMetValSerAlaAlaPheTyrIleThrGlyThrIleGlyPheGlnGluAsnAsnAla 182 : TTCGTATATGGTATCTGCAGCATTTTACATAACTGGTACTATTGgatttcaagaaaataatgCT : 244 424 : SerSerAlaArgGlnPheLeuMetAsnMetAspLeuProPheAspThrAsnGlnSerProThrT : 445 ||| !:!!|||:!!.!!|||:!!!!.|||||||||||||||! |||!:!:!!||||||!.!| SerValSerArgGluLeuLeuLeuLysMetAspLeuProPheGlyThrSerGluSerProAsnT 245 : TCAGTATCTAGGGAGCTCCTTCTGAAAATGGATTTGCCTTTTGGGACCAGCGAATCGCCGAATT : 310 446 : yrGluLeuValValAlaAlaGlnIleIlePheGlnValMetSerGlyPheThrPheSerMetIl : 466 ||||||||||||||.!!.!!|||:!!:!!.!!!!.||| :!!!.!!!.||||||.!!:!:.! yrGluLeuValValThrThrGlnValLeuIleHisValSerAlaAlaLeuThrPheGlyValPh 311 : ACGAACTTGTAGTAACTACACAAGTCCTTATTCACGTATCAGCGGCCTTAACATTCGGTGTATT : 373 467 : eSerSerCysLeuValMetThrIle : 474 !|||:!! !|||:!!|||..!:!! eSerAlaLeuLeuLeuMetValVal 374 : CAGTGCTCTTCTCTTAATGGTGGTA : 399 vulgar: Lalb_14641 359 474 . LHQN01049752.1 54 399 + 285 M 115 345 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049752.1 exonerate:protein2genome:local gene 55 399 285 + . gene_id 2 ; sequence Lalb_14641 ; gene_orientation . LHQN01049752.1 exonerate:protein2genome:local cds 55 399 . + . LHQN01049752.1 exonerate:protein2genome:local exon 55 399 . + . insertions 0 ; deletions 0 LHQN01049752.1 exonerate:protein2genome:local similarity 55 399 285 + . alignment_id 2 ; Query Lalb_14641 ; Align 55 360 345 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14641 [mRNA] [translate_table: standard] Target: LHQN01049752.1 Habropoda laboriosa contig49752, whole genome shotgun sequence Model: protein2genome:local Raw score: 254 Query range: 2 -> 116 Target range: 54 -> 396 3 : ArgSerValLeuArgAspIleIleThrSerMetGluGluAspCysValLysTyrSerValAspA : 24 !.!|||||||||!!!||||||:!!:!!!!!||||||||||||||| !||||||:!!!.!! | HisSerValLeuSerAspIleLeuSerThrMetGluGluAspCysGlnLysTyrAlaAlaValA 55 : CACAGCGTACTTAGTGACATTTTATCAACCATGGAAGAGGATTGTCAGAAATATGCTGCTGTAG : 118 25 : spSerLysAsnLeuIleSerAsnAlaAlaAspLeuSerGlnSerValSerArgThrValIleIl : 45 ||! !!!.!!.|||!!:|||!!..!!!.!.!.|||||| :::::: ! !:!!!!: spIleAsnLysLeuMetSerLysThrGlyGlnLeuSerPheTyrLeuThrSerIleIleMetSe 119 : ATATAAATAAGTTGATGTCAAAAACCGGACAgctatctttttatttaacaagcATTATTATGTC : 181 46 : eIleTyrValAlaSerAlaGlyPheTyrAlaValThrThrLeuAlaAlaProHisSerAsnAsp : 66 ! |||:!!!.!||||||!.!|||||| !..! !|||:!!!.. ...:::||| ! rSerTyrMetValSerAlaAlaPheTyrIleThrGlyThrIleGlyPheGlnGluAsnAsnAla 182 : TTCGTATATGGTATCTGCAGCATTTTACATAACTGGTACTATTGgatttcaagaaaataatgCT : 244 67 : ThrIleProArgArgLeuLeuLeuAsnMetAspLeuProPheAsnThrValGluSerProAsnT : 88 :!!:!! !!|||..!|||||||||!!.|||||||||||||||...||| !||||||||||||| SerValSerArgGluLeuLeuLeuLysMetAspLeuProPheGlyThrSerGluSerProAsnT 245 : TCAGTATCTAGGGAGCTCCTTCTGAAAATGGATTTGCCTTTTGGGACCAGCGAATCGCCGAATT : 310 89 : yrGluLeuValValMetLeuGlnValIleSerIleLeuMetThrSerTyrAlaTyrSerValPh : 109 ||||||||||||||! !||||||:!!! ! !:!! .!!:!!! .!!!:!.!!||||| yrGluLeuValValThrThrGlnValLeuIleHisValSerAlaAlaLeuThrPheGlyValPh 311 : ACGAACTTGTAGTAACTACACAAGTCCTTATTCACGTATCAGCGGCCTTAACATTCGGTGTATT : 373 110 : eSerAlaLeuLeuLeuMetMet : 116 |||||||||||||||||||:!! eSerAlaLeuLeuLeuMetVal 374 : CAGTGCTCTTCTCTTAATGGTG : 396 vulgar: Lalb_14641 2 116 . LHQN01049752.1 54 396 + 254 M 114 342 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049752.1 exonerate:protein2genome:local gene 55 396 254 + . gene_id 3 ; sequence Lalb_14641 ; gene_orientation . LHQN01049752.1 exonerate:protein2genome:local cds 55 396 . + . LHQN01049752.1 exonerate:protein2genome:local exon 55 396 . + . insertions 0 ; deletions 0 LHQN01049752.1 exonerate:protein2genome:local similarity 55 396 254 + . alignment_id 3 ; Query Lalb_14641 ; Align 55 3 342 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14638 [mRNA] [translate_table: standard] Target: LHQN01049752.1 Habropoda laboriosa contig49752, whole genome shotgun sequence Model: protein2genome:local Raw score: 320 Query range: 77 -> 199 Target range: 33 -> 399 78 : LeuSerValValTrpIleAsnHisAsnValLeuSerGluMetLeuSerThrMetGluGluAspC : 99 |||||| !:!! !||| !|||!:!|||||||||!!:!!:|||||||||||||||||||||| LeuSerLysIleThrIlePheHisSerValLeuSerAspIleLeuSerThrMetGluGluAspC 34 : ttgtCTAAAATAACGATATTTCACAGCGTACTTAGTGACATTTTATCAACCATGGAAGAGGATT : 97 100 : ysValLysTyrGlyMetIleAspAlaAsnAsnValIleSerLysThrAlaGluPheSerTyrAr : 120 || !||||||!.! :!!||| !|||!!.:!!!!:|||||||||!.!:!:...|||::: ysGlnLysTyrAlaAlaValAspIleAsnLysLeuMetSerLysThrGlyGlnLeuSerPheTy 98 : GTCAGAAATATGCTGCTGTAGATATAAATAAGTTGATGTCAAAAACCGGACAgctatcttttta : 160 121 : gIleThrSerLeuValThrValLeuTyrLeuSerSerAlaSerGlyValAlaAlaGlyAsnLeu : 141 :::||||||:!!:!!! ! !! !|||:!! !||||||:!! ! ! !.!!|||!.!:!! rLeuThrSerIleIleMetSerSerTyrMetValSerAlaAlaPheTyrIleThrGlyThrIle 161 : tttaacaagcATTATTATGTCTTCGTATATGGTATCTGCAGCATTTTACATAACTGGTACTATT : 223 142 : AlaPheProArgTyrAsnGluThrValAspArgGlnLeuLeuSerAsnMetAspLeuProPheA : 163 !..||| ... ||| :!!|||..!|||:!!|||||| !!!.|||||||||||||||. GlyPheGlnGluAsnAsnAlaSerValSerArgGluLeuLeuLeuLysMetAspLeuProPheG 224 : GgatttcaagaaaataatgCTTCAGTATCTAGGGAGCTCCTTCTGAAAATGGATTTGCCTTTTG : 289 164 : snThrAsnGluSerProThrTyrGluLeuValValThrAlaGlnValLeuHisGlnMetAlaSe : 184 ..|||!:!|||||||||!.!||||||||||||||||||.!!||||||||| !!!.:!::!!:! lyThrSerGluSerProAsnTyrGluLeuValValThrThrGlnValLeuIleHisValSerAl 290 : GGACCAGCGAATCGCCGAATTACGAACTTGTAGTAACTACACAAGTCCTTATTCACGTATCAGC : 352 185 : rAlaTyrValPheGlyValPheSerAlaLeuLeuValMetLeuIle : 199 !|||! ..!||||||||||||||||||||||||:!!|||:!!:!! aAlaLeuThrPheGlyValPheSerAlaLeuLeuLeuMetValVal 353 : GGCCTTAACATTCGGTGTATTCAGTGCTCTTCTCTTAATGGTGGTA : 399 vulgar: Lalb_14638 77 199 . LHQN01049752.1 33 399 + 320 M 122 366 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049752.1 exonerate:protein2genome:local gene 34 399 320 + . gene_id 1 ; sequence Lalb_14638 ; gene_orientation . LHQN01049752.1 exonerate:protein2genome:local cds 34 399 . + . LHQN01049752.1 exonerate:protein2genome:local exon 34 399 . + . insertions 0 ; deletions 0 LHQN01049752.1 exonerate:protein2genome:local similarity 34 399 320 + . alignment_id 1 ; Query Lalb_14638 ; Align 34 78 366 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14640 [mRNA] [translate_table: standard] Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 305 -> 361 Target range: 824 -> 992 306 : SerGlnMetIleValAspAlaAlaTyrGlnIleAlaTrpTyrGluLeuGlnProAsnIleSerA : 327 ||||||:!:|||! !:!!.!!||||||:!!.!! !||||||!!:|||!:: !!!.! !|||! SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSerG 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAGCC : 888 328 : rgGlnLeuValLeuLeuIleLeuLysCysGlnArgGlyLeuProLeuThrPheGlyLysPheSe : 348 :!! |||:!!! !:!!||||||!:!! !|||!:!|||!!! !!!..||||||||||||||||| lnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysPheSe 889 : AACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaattttc : 951 349 : rThrLeuSerLeuAspSerPheThrSerIleLeuHisMet : 361 |:::|||||||||!!:|||||||||:!!:!! :::::: rSerLeuSerLeuGluSerPheThrAlaValSerTyrLeu 952 : aagtctCTCCTTGGAAAGCTTTACGGCCGTAAGctactta : 992 vulgar: Lalb_14640 305 361 . LHQN01050112.1 824 992 + 143 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 992 143 + . gene_id 1 ; sequence Lalb_14640 ; gene_orientation . LHQN01050112.1 exonerate:protein2genome:local cds 825 992 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 992 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 992 143 + . alignment_id 1 ; Query Lalb_14640 ; Align 825 306 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14638 [mRNA] [translate_table: standard] Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 307 -> 363 Target range: 824 -> 992 308 : AsnGlnMetIleIleAspAlaAlaTyrGlnMetThrTrpTyrAspLeuGlnProAspIleSerA : 329 !:!|||:!:||| !:!!.!!||||||:!!.!. !||||||||||||!:: !! ! !|||! SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSerG 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAGCC : 888 330 : rgGlnIleValPheIleMetLeuLysSerGlnLysGlyLeuProLeuThrPheGlyLysPheSe : 350 :!! :!!:!! !:!!!!:|||!:!||||||||||||!!! !!!..||||||||||||||||| lnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysPheSe 889 : AACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaattttc : 951 351 : rThrLeuSerLeuGluSerPheThrGlyIleLeuHisVal : 363 |:::|||||||||||||||||||||!.!:!! :::::: rSerLeuSerLeuGluSerPheThrAlaValSerTyrLeu 952 : aagtctCTCCTTGGAAAGCTTTACGGCCGTAAGctactta : 992 vulgar: Lalb_14638 307 363 . LHQN01050112.1 824 992 + 147 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 992 147 + . gene_id 1 ; sequence Lalb_14638 ; gene_orientation . LHQN01050112.1 exonerate:protein2genome:local cds 825 992 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 992 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 992 147 + . alignment_id 1 ; Query Lalb_14638 ; Align 825 308 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14641 [mRNA] [translate_table: standard] Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 154 -> 210 Target range: 824 -> 992 155 : AsnAspMetIleValGluAlaAlaTyrGluIleSerTrpTyrAsnMetArgProSerMetSerA : 176 !:!.!.:!:|||! !.!..!!|||||||||.!! !||||||:!!:!:||| !!!!! |||! SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSerG 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAGCC : 888 177 : rgGlnValIleLeuLeuLeuSerArgSerGlnLysGlyLeuCysLeuThrPheGlyLysPheSe : 197 :!! :!!|||! !:!!:!!! !|||||||||||||||!!! !..||||||||||||||||| lnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysPheSe 889 : AACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaattttc : 951 198 : rAlaLeuSerLeuGluThrPheThrTrpValSerValLeu : 210 |:::||||||||||||!:!|||||| |||||| ||| rSerLeuSerLeuGluSerPheThrAlaValSerTyrLeu 952 : aagtctCTCCTTGGAAAGCTTTACGGCCGTAAGctactta : 992 vulgar: Lalb_14641 154 210 . LHQN01050112.1 824 992 + 142 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 992 142 + . gene_id 1 ; sequence Lalb_14641 ; gene_orientation . LHQN01050112.1 exonerate:protein2genome:local cds 825 992 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 992 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 992 142 + . alignment_id 1 ; Query Lalb_14641 ; Align 825 155 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14660 [mRNA] [translate_table: standard] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 105 -> 172 Target range: 204023 -> 204224 106 : ArgValLeuProPheAsnLeuTrpValAspLeuProValSerMetThrProTyrTyrG : 125 !:!:!!!!!||| ! ::: :::||| |||||||||!:!| LysLeuPheProValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheG 204024 : AAGCTTTTTCCGGTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTG : 204081 126 : luIleIlePheIleIleGluValLeuSerLeuTyrGlnIleCysValAlaTyrPheCy : 144 |||||!!:|||:!!:!!:!!:!! !!!!||| !!!:...:!!..!|||.!! ! luIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGl 204082 : AGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGG : 204138 145 : sPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaSerGlnPheArgValLeu : 163 ! !!|||||||||!!! ! |||:!!! !||||||:!!..!.!!|||!!...! !||| yValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeu 204139 : TGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTT : 204195 164 : GlnTyrArgLeuThrAsnLeuArgTyr : 172 !:: ||||||.!!|||:!!!:!:!! ArgThrArgLeuAlaAsnIleLysHis 204196 : CGTACACGACTTGCAAACATAAAACAT : 204224 vulgar: Lalb_14660 105 172 . KQ414617.1 204023 204224 + 117 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204024 204224 117 + . gene_id 1 ; sequence Lalb_14660 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204024 204224 . + . KQ414617.1 exonerate:protein2genome:local exon 204024 204224 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204024 204224 117 + . alignment_id 1 ; Query Lalb_14660 ; Align 204024 106 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14657 [mRNA] [translate_table: standard] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 89 -> 140 Target range: 204068 -> 204221 90 : ThrProTyrTyrGluIleAlaPhePheValGlnValLeuValValTyrGluValGlyI : 109 |||||||||!:!|||||| !|||.!!:!!|||:!! !..!:!! !:!!!.!: ThrProTyrPheGluIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaL 204069 : ACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCAC : 204126 110 : leCysHisPheCysValAspAsnIleLeuCysIleMetAsnLeuHisValAlaThrGl : 128 !!|||:!!.!! !!|||||||||.!!!!! ! |||:!!! !||||||:!!..! !|| euCysTyrIleGlyValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGl 204127 : TTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCA : 204183 129 : nPheArgIleLeuGlnTyrArgLeuSerAsnLeuLys : 140 |!!...!! !|||!:: ||||||:!!|||:!!||| nLeuGluAsnLeuArgThrArgLeuAlaAsnIleLys 204184 : ATTGGAAAATCTTCGTACACGACTTGCAAACATAAAA : 204221 vulgar: Lalb_14657 89 140 . KQ414617.1 204068 204221 + 107 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204069 204221 107 + . gene_id 1 ; sequence Lalb_14657 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204069 204221 . + . KQ414617.1 exonerate:protein2genome:local exon 204069 204221 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204069 204221 107 + . alignment_id 1 ; Query Lalb_14657 ; Align 204069 90 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14673 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 640 Query range: 0 -> 304 Target range: 1030017 -> 1028277 1 : MetPheGluAsnValThrProGluLysAlaMetValPheValArgLeuSerIleAl : 19 |||!!.:!! !! !!:!||||||!:!|||!!: !.!!|||!:!:!!! !! !|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1030017 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1029963 20 : aLeuIleCysGlyTrpProLeuProSerThrAlaThrLysAlaGlnValLeuCysT : 38 |!!!! !||| !!|||||||||||||||||||||||||||:!!! !|||||| ! aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1029962 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1029906 39 : yrArgIleLeuLysValLeuCysGlyIleSerAlaIleGlyLeuPheLeuProVal : 56 :!!:!||||||!:! !!!! !:!!!:!|||:!!! !||||||||||||:!! heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1029905 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1029852 57 : LeuAsnAlaAlaIlePheTyrTyrGlyAspAlaThrHisPheSerLeuAlaSerIl : 75 ||| !!||| ! ! ! :!! ..!|||||| !:!! !!:!! !|||:!! LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1029851 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1029795 76 : eMetIleIleAlaSerAlaHisLeuLeuThrGlnValLeuIleAsnSerPheGlnH : 94 !:!!! :!!||| ......:::... |||..!!!!:!! !! ! !|||: sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1029794 : CCTGACGCTTGCCctcgtgcaaatatttttccagacTTTCGTTTGCATCGGCCAAT : 1029738 95 : isAspGlnTrpGln >>>> Target Intron 1 >>>> ArgLeuIleGluH : 103 !!|||!!.!::||| 550 bp !:!|||||||||. yrAspHisPheGln++ ++LysLeuIleGluG 1029737 : ACGATCATTTTCAGgt.........................agAAACTAATCGAAG : 1029161 104 : isMetThrAlaSerLeuLysAsnAlaLysSerTyrGluArgAsnValTyrGlnArg : 121 !.|||! ! !!!!! !:!!!..|||||| !!|||||||||:!!|||!:!|||||| luMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheGlnArg 1029160 : AAATGAAGATTTGCTGTGAAACAGCGAAACCATACGAAAGAGACGTCTTTCAACGA : 1029107 122 : TyrValAsnThrTyrCysArgPheTyrGlyLeuThrValIleTrpTyrTyrValCy : 140 ||||||:!!! !|||! ! !||||||! ! ! ! ! |||!:!|||:!! TyrValAspLysTyrSerLeuPheTyrValThrCysSerSerTrpPheTyrLeuTh 1029106 : TACGTCGATAAATACTCTTTATTTTACGTAACATGTTCGTCGTGGTTTTACTTAAC : 1029050 141 : sAlaLeuValIleIleValAlaSerIlePheLeuProGlnProPheProThrIleS : 159 |||:!!:!!!!::!!:!!!.!||| .!!:!! !!.!.||||||||||||! !: rAlaValIleMetValLeuGlySerArgIleIleSerAspProPheProThrAsnA 1029049 : AGCAGTTATTATGGTTCTGGGAAGTCGGATTATATCTGATCCTTTTCCAACCAACG : 1028993 160 : erGluTyrProPheAspValTyrTyrGluProValArgThrIleIlePheLeuHis : 177 !!! !||||||||| !||| !!!:!||||||:!!|||!:!|||||||||:!!||| laValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHis 1028992 : CCGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGTATCATTTTTATGCAC : 1028939 178 : GlnAlaPheValGlyPheGlnCysSerAlaSerValSerLeuAsnMetPheAlaAl : 196 |||:!!|||||||||.!.||||||:!!||| !..!|||:!!|||:!!.!..!!|| GlnSerPheValGlyIleGlnCysAlaAlaHisThrSerMetAsnValLeuThrAl 1028938 : CAATCGTTCGTTGGCATACAGTGTGCTGCACACACTAGTATGAATGTGCTAACTGC : 1028882 197 : aLeuLeuLeuLeuPheAlaAlaAlaArgTyrGluIleLeuMetIleAspLeuArgG : 215 ||||||||||||||||||||||||||||!:!||||||||||||!!:!!:||||||. aLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuMetMetGluLeuArgA 1028881 : ATTGTTATTACTATTTGCTGCAGCTCGTTTCGAGATACTGATGATGGAGCTGAGGA : 1028825 216 : luSerThrSerIleAspAlaLeuThrMetCysValLysLysTyrTyrAlaValThr : 233 !. !!:!..!|||!!:.!!|||! !! |||:!!|||||||||! !||| ! snValSerAspIleGluThrLeuIleLysCysMetLysLysTyrSerIleValArg 1028824 : ATGTCAGTGACATTGAAACACTGATTAAATGTATGAAAAAGTATTCGATCGTACGG : 1028771 234 : {Ar} >>>> Target Intron 2 >>>> {g}PheAlaLysAspIleIleAs : 241 {||} 205 bp {|}!:!|||! !|||:!::!! {Ar}++ ++{g}TyrAlaThrAspValValTh 1028770 : {AG}gt.........................ag{G}TACGCAACGGACGTGGTTAC : 1028542 242 : pAlaThrGlnTyrIleValTrpPheThrIleLeuTyrSerSerLeuAspLeuValL : 260 !.!!! !!:! !:!:||| !.!!|||:!!:!! !!!!!!:!!! ! !|||! rThrIleArgLeuLeuValLeuIleThrValIleThrCysThrValAlaCysValP 1028541 : CACAATTCGACTTCTGGTTCTGATTACGGTAATCACATGCACTGTGGCGTGTGTAT : 1028485 261 : euCysGlyLeuAsnIleIleGly >>>> Target Intron 3 >>>> ArgG : 269 !!..!|||:!!|||:!:|||||| 73 bp !:!| heAlaGlyIleAsnLeuIleGly++ ++LysG 1028484 : TTGCTGGAATTAACTTGATCGGAgt.........................agAAAC : 1028385 270 : lnProPheAlaIleLysLeuGlnPheIlePheMetAlaGlyThrIleLeuMetGln : 287 |||||||||||:!:||| !||||||:!! !:!!::!|||||| !|||:!!:!! lnProPheAlaValLysAlaGlnPheLeuThrValSerGlyThrAlaLeuLeuGlu 1028384 : AACCGTTCGCTGTGAAAGCTCAGTTTCTTACTGTGAGTGGAACCGCTTTGCTGGAA : 1028331 288 : ValLeuMetCysAlaLeuProAlaAspValLeuMetAsnMetSerThrAsp : 304 ||||||||||||:!!|||||||||||| !|||!!::!!||| !!:!||| ValLeuMetCysSerLeuProAlaAspHisLeuIleAspMetValSerAsp 1028330 : GTGCTTATGTGTTCACTACCAGCTGACCATTTGATAGATATGGTAAGTGAT : 1028278 vulgar: Lalb_14673 0 304 . KQ414618.1 1030017 1028277 - 640 M 98 294 5 0 2 I 0 546 3 0 2 M 135 405 S 0 2 5 0 2 I 0 201 3 0 2 S 1 1 M 33 99 5 0 2 I 0 69 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028278 1030017 640 - . gene_id 1 ; sequence Lalb_14673 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1029724 1030017 . - . KQ414618.1 exonerate:protein2genome:local exon 1029724 1030017 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1029722 1029723 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1029174 1029723 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1029174 1029175 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028767 1029173 . - . KQ414618.1 exonerate:protein2genome:local exon 1028767 1029173 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1028765 1028766 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1028562 1028766 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1028562 1028563 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028462 1028561 . - . KQ414618.1 exonerate:protein2genome:local exon 1028462 1028561 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1028460 1028461 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1028389 1028461 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1028389 1028390 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028278 1028388 . - . KQ414618.1 exonerate:protein2genome:local exon 1028278 1028388 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028278 1030017 640 - . alignment_id 1 ; Query Lalb_14673 ; Align 1030018 1 294 ; Align 1029174 99 405 ; Align 1028561 235 99 ; Align 1028389 268 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14673 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 624 Query range: 0 -> 304 Target range: 1039184 -> 1035916 1 : MetPheGluAsnValThrProGluLysAlaMetValPheValArgLeuSerIleAl : 19 |||!!.:!! !! !!:!||||||!:!|||!!: !.!!|||!:!:!!! !! !|| MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1039184 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1039130 20 : aLeuIleCysGlyTrpProLeuProSerThrAlaThrLysAlaGlnValLeuCysT : 38 |!!!! !||| !!|||||||||||||||||||||||||||:!!! !|||||| ! aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1039129 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1039073 39 : yrArgIleLeuLysValLeuCysGlyIleSerAlaIleGlyLeuPheLeuProVal : 56 :!!:!||||||!:! !!!! !:!!!:!|||:!!! !||||||||||||:!! heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1039072 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1039019 57 : LeuAsnAlaAlaIlePheTyrTyrGlyAspAlaThrHisPheSerLeuAlaSerIl : 75 ||| !!||| ! ! ! :!! ..!|||||| !:!! !!:!! !|||:!! LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1039018 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1038962 76 : eMetIleIleAlaSerAlaHisLeuLeuThrGlnValLeuIleAsnSerPheGlnH : 94 !:!!! :!!||| ......:::... |||......::: !! ! !|||: sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1038961 : CCTGACGCTTGCTctcgtgcaaatatttttccaaactttcgttTGCATCGGTCAAT : 1038905 95 : isAspGlnTrpGln >>>> Target Intron 1 >>>> ArgLeuIleGluH : 103 !!|||!!.!::||| 550 bp !:!|||||||||. yrAspHisPheGln++ ++LysLeuIleGluG 1038904 : ACGATCATTTTCAGgt.........................agAAACTAATCGAAG : 1038328 104 : isMetThrAlaSerLeuLysAsnAlaLysSerTyrGluArgAsnValTyrGlnArg : 121 !.|||! ! !!!!! !:!!!..|||||| !!|||||||||:!!|||!:!|||||| luMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheGlnArg 1038327 : AAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGACGTCTTCCAACGA : 1038274 122 : TyrValAsnThrTyrCysArgPheTyrGlyLeuThrValIleTrpTyrTyrValCy : 140 |||||||||! !:!: |||||| ! ! !|||!:!|||:!! TyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheTyrLeuTh 1038273 : TACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTTACTTAAC : 1038217 141 : sAlaLeuValIleIleValAlaSerIlePheLeuProGlnProPheProThrIleS : 159 |||:!!:!!!!::!!:!!!.!|||:!:.!!:!! !!.!.||||||||||||! !: rAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPheProThrAsnA 1038216 : AGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACCAACG : 1038160 160 : erGluTyrProPheAspValTyrTyrGluProValArgThrIleIlePheLeuHis : 177 !!! !||||||||| !||| !!!:!||||||:!!|||!:!|||||||||:!!||| laValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHis 1038159 : CAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCAC : 1038106 178 : GlnAlaPheValGlyPheGlnCysSerAlaSerValSerLeuAsnMetPheAlaAl : 196 |||:!!|||||||||.!.||||||:!!||| !!.!|||:!!|||:!!.!!:!!|| GlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAl 1038105 : CAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGC : 1038049 197 : aLeuLeuLeuLeuPheAlaAlaAlaArgTyrGluIleLeuMetIleAspLeuArgG : 215 ||||||||||||||||.!!.!!||||||:::||||||||||||! !!:||||||. aLeuLeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgA 1038048 : ACTGTTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGA : 1037992 216 : luSerThrSerIleAspAlaLeuThrMetCysValLysLysTyrTyrAlaValThr : 233 !. !!.!..!|||!!:.!!|||! !! ! !!:!!|||||||||! .!!||| ! snValAsnAspIleGluThrLeuIleLysSerMetLysLysTyrSerThrValArg 1037991 : ATGTCAATGATATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGG : 1037938 234 : {Ar} >>>> Target Intron 2 >>>> {g}PheAlaLysAspIleIleAs : 241 {||} 1733 bp {|}!:!|||! !|||:!::!! {Ar}++ ++{g}TyrAlaThrAspValValTh 1037937 : {AG}gt.........................ag{G}TACGCAACGGACGTGGTTAC : 1036181 242 : pAlaThrGlnTyrIleValTrpPheThrIleLeuTyrSerSerLeuAspLeuValL : 260 !.!!! !!:!!:!:!:||| ! !|||:!!:!! !!!!!!:!!! ! !|||! rThrIleArgPheLeuValLeuSerThrValIleThrCysThrValAlaCysValP 1036180 : CACAATTCGATTTCTGGTTCTGAGTACGGTAATCACATGCACTGTGGCGTGTGTAT : 1036124 261 : euCysGlyLeuAsnIleIleGly >>>> Target Intron 3 >>>> ArgG : 269 !!..!|||:!!|||:!:|||||| 73 bp !:!| heAlaGlyIleAsnLeuIleGly++ ++LysG 1036123 : TTGCTGGAATTAATTTGATCGGAgt.........................agAAAC : 1036024 270 : lnProPheAlaIleLysLeuGlnPheIlePheMetAlaGlyThrIleLeuMetGln : 287 |||||!!.|||:!!|||:!!||||||:!! !|||::!|||||| |||:!!:!! lnProLeuAlaValLysValGlnPheLeuThrMetSerGlyThrAlaLeuLeuGlu 1036023 : AACCGTTGGCTGTTAAAGTTCAATTTCTTACTATGAGTGGAACCGCGTTGCTGGAA : 1035970 288 : ValLeuMetCysAlaLeuProAlaAspValLeuMetAsnMetSerThrAsp : 304 |||!!!||||||:!!|||||||||||| !|||!!::!!||| !!:!||| ValPheMetCysSerLeuProAlaAspHisLeuIleAspMetValSerAsp 1035969 : GTGTTTATGTGTTCACTACCAGCTGACCATTTGATAGATATGGTAAGTGAT : 1035917 vulgar: Lalb_14673 0 304 . KQ414618.1 1039184 1035916 - 624 M 98 294 5 0 2 I 0 546 3 0 2 M 135 405 S 0 2 5 0 2 I 0 1729 3 0 2 S 1 1 M 33 99 5 0 2 I 0 69 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1035917 1039184 624 - . gene_id 2 ; sequence Lalb_14673 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1038891 1039184 . - . KQ414618.1 exonerate:protein2genome:local exon 1038891 1039184 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1038889 1038890 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1038341 1038890 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1038341 1038342 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1037934 1038340 . - . KQ414618.1 exonerate:protein2genome:local exon 1037934 1038340 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1037932 1037933 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1036201 1037933 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1036201 1036202 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1036101 1036200 . - . KQ414618.1 exonerate:protein2genome:local exon 1036101 1036200 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1036099 1036100 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1036028 1036100 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1036028 1036029 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1035917 1036027 . - . KQ414618.1 exonerate:protein2genome:local exon 1035917 1036027 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1035917 1039184 624 - . alignment_id 2 ; Query Lalb_14673 ; Align 1039185 1 294 ; Align 1038341 99 405 ; Align 1036200 235 99 ; Align 1036028 268 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14673 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 445 Query range: 0 -> 247 Target range: 1053857 -> 1052503 1 : MetPheGluAsnValThrProGluLysAlaMetValPheValArgLeuSerIleAl : 19 |||!!.:!!.!.:!!||||||||||||!.!!!:! !.!!:!! !!!!!|||:!:|| MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : aLeuIleCysGlyTrpProLeuProSerThrAlaThrLysAlaGlnValLeuCysT : 38 |||| ! ! !!||||||||| !!|||:!!|||!:!||||||||||||:::...: aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 39 : yrArgIleLeuLysValLeuCysGlyIleSerAlaIleGlyLeuPheLeuProVal : 56 :::::||||||:::::: !!!.!|||||||||:!! !|||.!!||||||:!! heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 57 : LeuAsnAlaAlaIlePheTyrTyrGlyAspAlaThrHisPheSerLeuAlaSerIl : 75 ||| !!:!!.!! !!!.:!!!:!! !|||!.!! ! !.!!|||! !::!! ! LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 76 : eMetIleIleAlaSerAlaHisLeuLeuThrGlnValLeuIleAsnSerPheGlnH : 94 !:!! !!:!.! ! !!!.:!!:!!! !|||..!:!!||| !! ! !.!.: sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCysPheThrAsnT 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGTTTCACCAACT : 1053578 95 : isAspGlnTrpGln >>>> Target Intron 1 >>>> ArgLeuIleGluH : 103 !!|||! !||| 613 bp |||:!!||| !. yrAspLeuLeuGln++ ++ArgIleIleThrG 1053577 : ACGACCTTCTGCAGgt.........................agCGAATAATTACAG : 1052938 104 : isMetThrAlaSerLeuLysAsnAlaLysSerTyrGluArgAsnValTyrGlnArg : 121 !.|||! !.!!! !:!!|||.!.|||:!!..!!:!||||||.!.:!! !!!.!.! luMetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLeuHisAsn 1052937 : AAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCACAAC : 1052884 122 : TyrValAsnThrTyrCysArgPheTyrGlyLeuThrValIleTrpTyrTyrValCy : 140 |||:!!.!.! !! ! ! !||||||||| !:!!:!!|||||| |||:!!|| TyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrTyrLeuCy 1052883 : TATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACATACCTCTG : 1052827 141 : sAlaLeuValIleIleValAlaSerIlePheLeuProGlnProPheProThrIleS : 159 |||| ! !.!!:!!:!!!.! !!:!! !!||||||.!.|||||||||!:!! !: sAlaThrCysPheValLeuGlyProValValLeuProAsnProPheProSerSerA 1052826 : TGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGCAGTG : 1052770 160 : erGluTyrProPheAspValTyrTyrGluProValArgThrIleIlePheLeuHis : 177 !!|||||||||||| !||| !! ! !|||:!!!.!.!!|||:!!!:!|||||| laGluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyrLeuHis 1052769 : CAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTACCTGCAC : 1052716 178 : GlnAlaPheValGlyPheGlnCysSerAlaSerValSerLeuAsnMetPheAlaAl : 196 |||:!!|||:!!.!!||||||! !|||||| !:!!!!!:!!!:!!!:|||!.!|| GlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePheGlyAl 1052715 : CAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTTCGGAGC : 1052659 197 : aLeuLeuLeuLeuPheAlaAlaAlaArgTyrGluIleLeuMetIleAspLeuArgG : 215 ||||||||||! !.!!.!!|||||||||!:!.!. !|||! :!:!!::!!!:!: aLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluValGlnG 1052658 : TCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTTCAAC : 1052602 216 : luSerThrSerIleAspAlaLeuThrMetCysValLysLysTyrTyrAlaValThr : 233 !!|||:!!|||||| !! !|||! !!!:|||||||||||| ! !:!!! ! lnSerSerSerIleHisMetLeuIleIleCysValLysLysGlnLeuLeuLeuArg 1052601 : AAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCTACTACTGAGG : 1052548 234 : ArgPheAlaLysAspIleIleAspAlaThrGlnTyrIleVal : 247 |||! !:::|||... ! !:!|||||| Arg******GluAspPheAlaIleTyrAspTyrPheIleVal 1052547 : AGGTGATAAGaagattttgcaatttatgatTACTTTATCGTA : 1052504 vulgar: Lalb_14673 0 247 . KQ414618.1 1053857 1052503 - 445 M 98 294 5 0 2 I 0 609 3 0 2 M 149 447 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1052504 1053857 445 - . gene_id 3 ; sequence Lalb_14673 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1053564 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053564 1053857 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1053562 1053563 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052951 1053563 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052951 1052952 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052504 1052950 . - . KQ414618.1 exonerate:protein2genome:local exon 1052504 1052950 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1052504 1053857 445 - . alignment_id 3 ; Query Lalb_14673 ; Align 1053858 1 294 ; Align 1052951 99 447 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14673 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 239 Query range: 72 -> 234 Target range: 1058218 -> 1057732 73 : AlaSerIleMetIleIleAlaSerAlaHisLeuLeuThrGlnValLeuIleAsnSe : 91 :!!!!!:!:!!: |||! !!!! !! ||| ::: :!:::: ! SerThrValIleSerIleGluThrPheLeuLeuAsnIleLeuIleGluLeuSerPr 1058218 : TCGACCGTGATTTCGATAGAAACATTTCtgttaaacattttaattgaacTGTCACC : 1058164 92 : rPheGlnHisAspGlnTrpGlnArgLeuIleGluHisMetThrAlaSerLeuLysA : 110 ! ! :!!:!!:!! ! !||| !||| ! !!||| ! !! !! !!:! oValLysAsnAsnAlaSerGlnValLeuTyrPheAspMetGluAsnPheCysArgT 1058163 : GGTGAAAAACAATGCTTCGCAGGTATTGTACTTCGACATGGAGAATTTCTGCAGAT : 1058107 111 : snAlaLysSerTyrGluArgAsnValTyrGlnArgTyrValAsnThrTyrCysArg : 128 !!|||! ||| |||::: ||| ||||||||||||:!!! !||| ! yrAlaThrSerLysGluLysValValLeuGlnArgTyrValAspArgTyrLysTyr 1058106 : ACGCCACCtcgaaggaaaaagttgtcCTGCAACGATACGTGGACAGATACAAATAC : 1058053 129 : PheTyrGlyLeuThrValIleTrpTyrTyrValCysAlaLeuValIleIleValAl : 147 |||:!!|||:!! !:!!:!!|||! !!:!:!! .!!:!! !!:!!||| !!. PheHisGlyIleTyrIleLeuTrpCysPheLeuThrThrIlePheValIleSerGl 1058052 : TTTCATGGGATTTATATATTATGGTGCTTCCTCACGACCATCTTCGTCATAAGTGG : 1057996 148 : aSerIlePheLeuProGlnProPheProThrIleSerGluTyrProPheAspValT : 166 ! !!:!:!:!! !|||||| !!||||||||| !:!! !|||||||||.!.||| yProLeuTyrSerProGlnThrPheProThrHisAlaIleTyrProPheGlnValG 1057995 : TCCATTGTACTCACCACAGACGTTCCCCACTCATGCGATATATCCTTTCCAAGTGG : 1057939 167 : yrTyrGluProValArgThrIleIlePheLeuHisGlnAlaPheValGlyPheGln : 184 ! :!! !! ! !!!:: :::|||:::...||||||:!!!!.|||||||||||| luHisThrLeuPheLysIleValIleTyrPheHisGlnSerLeuValGlyPheGln 1057938 : AACATACACTGTTCAagattgttatttatttccatCAGTCGTTAGTTGGTTTTCAG : 1057885 185 : CysSerAlaSerValSerLeuAsnMetPheAlaAlaLeuLeuLeuLeuPheAlaAl : 203 ...||||||.!!:!!:!!:!!:!!! !||||||||||||! !!:!||||| AlaSerAlaGlyMetAlaIleAspThrGlnIleAlaLeuLeuLeuArgTyrAlaAl 1057884 : GCGTCCGCTGGTATGGCCATCGACACTCAAATTGCTCTTCTTCTGCGATACGCGGC : 1057828 204 : aAlaArgTyrGluIleLeuMetIleAspLeuArgGluSerThrSerIleAspAlaL : 222 |||||||!:!|||:!!||| ! !!!::!!|||.!.:!!!.!!!! ! !! !! aAlaArgPheGluLeuLeuGlyAsnGluMetArgAsnAlaAsnThrHisCysGluP 1057827 : TGCCAGGTTCGAGCTATTGGGAAACGAGATGCGAAATGCAAATACTCACTGTGAAT : 1057771 223 : euThrMetCysValLysLysTyrTyrAlaValThrArg : 234 !!!.! |||:!!:!!|||:!! !! !:!! !||| heAsnAlaCysIleGluLysHisSerGluLeuLeuArg 1057770 : TCAATGCCTGCATAGAGAAGCACAGTGAACTTCTCAGg : 1057733 vulgar: Lalb_14673 72 234 . KQ414618.1 1058218 1057732 - 239 M 162 486 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057733 1058218 239 - . gene_id 4 ; sequence Lalb_14673 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1057733 1058218 . - . KQ414618.1 exonerate:protein2genome:local exon 1057733 1058218 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057733 1058218 239 - . alignment_id 4 ; Query Lalb_14673 ; Align 1058219 73 486 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14672 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 475 Query range: 206 -> 410 Target range: 1029176 -> 1028286 207 : MetArgLeuIleGluHisMetThrAlaSerLeuLysAsnAlaLysSerTyrGluAr : 225 ..!!:!|||||||||.!.|||! ! !!!!! !:!!!..|||||| !!|||||||| GlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGluAr 1029176 : CAGAAACTAATCGAAGAAATGAAGATTTGCTGTGAAACAGCGAAACCATACGAAAG : 1029122 226 : gAsnValTyrGlnArgTyrValAsnThrTyrTyrArgTyrTyrGlyLeuThrValM : 244 |:!!|||!:!||||||||||||:!!! !|||! ! !!:!|||! ! ! ! ! gAspValPheGlnArgTyrValAspLysTyrSerLeuPheTyrValThrCysSerS 1029121 : AGACGTCTTTCAACGATACGTCGATAAATACTCTTTATTTTACGTAACATGTTCGT : 1029065 245 : etTrpAsnTyrMetCysThrMetValValIleValAlaSerIlePheLeuProGln : 262 !||| !|||:!: .!!:!::!!:!!:!!:!!!.!||| .!!:!! !!.!. erTrpPheTyrLeuThrAlaValIleMetValLeuGlySerArgIleIleSerAsp 1029064 : CGTGGTTTTACTTAACAGCAGTTATTATGGTTCTGGGAAGTCGGATTATATCTGAT : 1029011 263 : ProPheProThrIleSerGluTyrProPheAspValTyrTyrGluProValArgTh : 281 ||||||||||||! !:!!! !||||||||| !||| !!!:!||||||:!!|||!: ProPheProThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSe 1029010 : CCTTTTCCAACCAACGCCGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAG : 1028954 282 : rIleIlePheLeuHisGlnAlaPheValGlyPheGlnCysSerAlaSerValSerL : 300 !|||||||||:!!||||||:!!|||||||||.!.||||||:!!||| !..!|||: rIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisThrSerM 1028953 : TATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACACTAGTA : 1028897 301 : euAsnMetPheAlaAlaLeuLeuLeuLeuPheAlaAlaAlaArgTyrGluIleLeu : 318 !!|||:!!.!..!!||||||||||||||||||||||||||||||!:!||||||||| etAsnValLeuThrAlaLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIleLeu 1028896 : TGAATGTGCTAACTGCATTGTTATTACTATTTGCTGCAGCTCGTTTCGAGATACTG : 1028843 319 : MetIleAspLeuArgGluSerThrSerIleAspAlaLeuThrMetCysValLysLy : 337 |||!!:!!:||||||.!. !!:!..!|||!!:.!!|||! !! |||:!!||||| MetMetGluLeuArgAsnValSerAspIleGluThrLeuIleLysCysMetLysLy 1028842 : ATGATGGAGCTGAGGAATGTCAGTGACATTGAAACACTGATTAAATGTATGAAAAA : 1028786 338 : sTyrTyrAlaValThr{Ar} >>>> Target Intron 1 >>>> {g}LeuA : 345 ||||! !||| !{||} 205 bp {|}! !| sTyrSerIleValArg{Ar}++ ++{g}TyrA 1028785 : GTATTCGATCGTACGG{AG}gt.........................ag{G}TACG : 1028557 346 : laMetAspValIleAspAlaThrGlnTyrIleValTrpPheThrIleLeuTyrSer : 363 ||! !||||||:!! !.!!! !!:! !:!:||| !.!!|||:!!:!! !!! laThrAspValValThrThrIleArgLeuLeuValLeuIleThrValIleThrCys 1028556 : CAACGGACGTGGTTACCACAATTCGACTTCTGGTTCTGATTACGGTAATCACATGC : 1028503 364 : SerIleAspLeuValLeuCysGlyLeuAsnIleIleGly >>>> Target Int : 377 !!!:!:! ! !|||!!!..!|||:!!|||:!:|||||| 73 bp ThrValAlaCysValPheAlaGlyIleAsnLeuIleGly++ 1028502 : ACTGTGGCGTGTGTATTTGCTGGAATTAACTTGATCGGAgt............... : 1028459 378 : ron 2 >>>> ArgGlnProPheAlaIleLysLeuGlnPheIlePheMetAlaGl : 391 !:!||||||||||||:!:||| !||||||:!! !:!!::!|| ++LysGlnProPheAlaValLysAlaGlnPheLeuThrValSerGl 1028458 : ..........agAAACAACCGTTCGCTGTGAAAGCTCAGTTTCTTACTGTGAGTGG : 1028346 392 : yThrIleLeuMetGlnValLeuMetCysAlaLeuProAlaAspValLeuIleAsnM : 410 |||| !|||:!!:!!||||||||||||:!!|||||||||||| !||||||:!!| yThrAlaLeuLeuGluValLeuMetCysSerLeuProAlaAspHisLeuIleAspM 1028345 : AACCGCTTTGCTGGAAGTGCTTATGTGTTCACTACCAGCTGACCATTTGATAGATA : 1028289 411 : et : 410 || et 1028288 : TG : 1028287 vulgar: Lalb_14672 206 410 . KQ414618.1 1029176 1028286 - 475 M 136 408 S 0 2 5 0 2 I 0 201 3 0 2 S 1 1 M 33 99 5 0 2 I 0 69 3 0 2 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028287 1029176 475 - . gene_id 1 ; sequence Lalb_14672 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1028767 1029176 . - . KQ414618.1 exonerate:protein2genome:local exon 1028767 1029176 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1028765 1028766 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1028562 1028766 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1028562 1028563 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028462 1028561 . - . KQ414618.1 exonerate:protein2genome:local exon 1028462 1028561 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1028460 1028461 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1028389 1028461 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1028389 1028390 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028287 1028388 . - . KQ414618.1 exonerate:protein2genome:local exon 1028287 1028388 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028287 1029176 475 - . alignment_id 1 ; Query Lalb_14672 ; Align 1029177 207 408 ; Align 1028561 344 99 ; Align 1028389 377 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14672 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 458 Query range: 206 -> 410 Target range: 1038343 -> 1035925 207 : MetArgLeuIleGluHisMetThrAlaSerLeuLysAsnAlaLysSerTyrGluAr : 225 ..!!:!|||||||||.!.|||! ! !!!!! !:!!!..|||||| !!|||||||| GlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGluAr 1038343 : CAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAG : 1038289 226 : gAsnValTyrGlnArgTyrValAsnThrTyrTyrArgTyrTyrGlyLeuThrValM : 244 |:!!|||!:!|||||||||||||||! !:!: :::||| ! ! gAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerS 1038288 : AGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGT : 1038232 245 : etTrpAsnTyrMetCysThrMetValValIleValAlaSerIlePheLeuProGln : 262 ||| !|||:!: .!!!!::!!:!!:!!:!!!.!|||:!:.!!:!! !!.!. erTrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAsp 1038231 : CATGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGAT : 1038178 263 : ProPheProThrIleSerGluTyrProPheAspValTyrTyrGluProValArgTh : 281 ||||||||||||! !:!!! !||||||||| !||| !!!:!||||||:!!|||!: ProPheProThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSe 1038177 : CCTTTTCCAACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAG : 1038121 282 : rIleIlePheLeuHisGlnAlaPheValGlyPheGlnCysSerAlaSerValSerL : 300 !|||||||||:!!||||||:!!|||||||||.!.||||||:!!||| !!.!|||: rIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerM 1038120 : CATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTA : 1038064 301 : euAsnMetPheAlaAlaLeuLeuLeuLeuPheAlaAlaAlaArgTyrGluIleLeu : 318 !!|||:!!.!!:!!||||||||||||||||||.!!.!!||||||:::||||||||| etAsnValLeuSerAlaLeuLeuLeuLeuPheThrThrAlaArgPheGluIleLeu 1038063 : TGAATGTGCTTTCTGCACTGTTATTGCTATTCACTACAGCtcgtttcgaaatattg : 1038010 319 : MetIleAspLeuArgGluSerThrSerIleAspAlaLeuThrMetCysValLysLy : 337 |||! !!:||||||.!. !!.!..!|||!!:.!!|||! !! ! !!:!!||||| MetThrGluLeuArgAsnValAsnAspIleGluThrLeuIleLysSerMetLysLy 1038009 : aTGACGGAGTTGAGGAATGTCAATGATATCGAAACACTGATTAAGAGTATGAAAAA : 1037953 338 : sTyrTyrAlaValThr{Ar} >>>> Target Intron 1 >>>> {g}LeuA : 345 ||||! .!!||| !{||} 1733 bp {|}! !| sTyrSerThrValArg{Ar}++ ++{g}TyrA 1037952 : GTATTCGACTGTGCGG{AG}gt.........................ag{G}TACG : 1036196 346 : laMetAspValIleAspAlaThrGlnTyrIleValTrpPheThrIleLeuTyrSer : 363 ||! !||||||:!! !.!!! !!:!!:!:!:||| ! !|||:!!:!! !!! laThrAspValValThrThrIleArgPheLeuValLeuSerThrValIleThrCys 1036195 : CAACGGACGTGGTTACCACAATTCGATTTCTGGTTCTGAGTACGGTAATCACATGC : 1036142 364 : SerIleAspLeuValLeuCysGlyLeuAsnIleIleGly >>>> Target Int : 377 !!!:!:! ! !|||!!!..!|||:!!|||:!:|||||| 73 bp ThrValAlaCysValPheAlaGlyIleAsnLeuIleGly++ 1036141 : ACTGTGGCGTGTGTATTTGCTGGAATTAATTTGATCGGAgt............... : 1036098 378 : ron 2 >>>> ArgGlnProPheAlaIleLysLeuGlnPheIlePheMetAlaGl : 391 !:!||||||!!.|||:!!|||:!!||||||:!! !|||::!|| ++LysGlnProLeuAlaValLysValGlnPheLeuThrMetSerGl 1036097 : ..........agAAACAACCGTTGGCTGTTAAAGTTCAATTTCTTACTATGAGTGG : 1035985 392 : yThrIleLeuMetGlnValLeuMetCysAlaLeuProAlaAspValLeuIleAsnM : 410 |||| |||:!!:!!|||!!!||||||:!!|||||||||||| !||||||:!!| yThrAlaLeuLeuGluValPheMetCysSerLeuProAlaAspHisLeuIleAspM 1035984 : AACCGCGTTGCTGGAAGTGTTTATGTGTTCACTACCAGCTGACCATTTGATAGATA : 1035928 411 : et : 410 || et 1035927 : TG : 1035926 vulgar: Lalb_14672 206 410 . KQ414618.1 1038343 1035925 - 458 M 136 408 S 0 2 5 0 2 I 0 1729 3 0 2 S 1 1 M 33 99 5 0 2 I 0 69 3 0 2 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1035926 1038343 458 - . gene_id 2 ; sequence Lalb_14672 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1037934 1038343 . - . KQ414618.1 exonerate:protein2genome:local exon 1037934 1038343 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1037932 1037933 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1036201 1037933 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1036201 1036202 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1036101 1036200 . - . KQ414618.1 exonerate:protein2genome:local exon 1036101 1036200 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1036099 1036100 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1036028 1036100 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1036028 1036029 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1035926 1036027 . - . KQ414618.1 exonerate:protein2genome:local exon 1035926 1036027 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1035926 1038343 458 - . alignment_id 2 ; Query Lalb_14672 ; Align 1038344 207 408 ; Align 1036200 344 99 ; Align 1036028 377 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14672 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 409 Query range: 206 -> 463 Target range: 1052953 -> 1051975 207 : MetArgLeuIleGluHisMetThrAlaSerLeuLysAsnAlaLysSerTyrGluAr : 225 ..!|||:!!||| !.!.|||! !.!!! !:!!|||.!.|||:!!..!!:!||||| GlnArgIleIleThrGluMetIleThrTyrValLysGluAlaGlnGlnPheGluAr 1052953 : CAGCGAATAATTACAGAAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAG : 1052899 226 : gAsnValTyrGlnArgTyrValAsnThrTyrTyrArgTyrTyrGlyLeuThrValM : 244 |.!.:!! !!!.!.!|||:!!.!.! !! ! ! ! !!:!|||||| !:!!:!!! gGluIleLeuHisAsnTyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuI 1052898 : GGAAATTCTCCACAACTATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAA : 1052842 245 : etTrpAsnTyrMetCysThrMetValValIleValAlaSerIlePheLeuProGln : 262 !:|||!..|||:!:|||.!!! ! !!:!!:!!!.! !!:!! !!||||||.!. leTrpThrTyrLeuCysAlaThrCysPheValLeuGlyProValValLeuProAsn 1052841 : TTTGGACATACCTCTGTGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAAT : 1052788 263 : ProPheProThrIleSerGluTyrProPheAspValTyrTyrGluProValArgTh : 281 |||||||||!:!! !:!!|||||||||||| !||| !! ! !|||:!!!.!.! ProPheProSerSerAlaGluTyrProPheArgValAsnArgThrProMetAsnAl 1052787 : CCTTTTCCCAGCAGTGCAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGC : 1052731 282 : rIleIlePheLeuHisGlnAlaPheValGlyPheGlnCysSerAlaSerValSerL : 300 !|||:!!!:!|||||||||:!!|||:!!.!!||||||! !|||||| !:!!!!!: aIleValTyrLeuHisGlnSerPheIleSerPheGlnTyrSerAlaHisIleCysV 1052730 : TATTGTCTACCTGCACCAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTG : 1052674 301 : euAsnMetPheAlaAlaLeuLeuLeuLeuPheAlaAlaAlaArgTyrGluIleLeu : 318 !!!:!!!:|||!.!||||||||||||! !.!!.!!|||||||||!:!.!. !||| alSerIlePheGlyAlaLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeu 1052673 : TAAGCATTTTCGGAGCTCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTA : 1052620 319 : MetIleAspLeuArgGluSerThrSerIleAspAlaLeuThrMetCysValLysLy : 337 ! :!:!!::!!!:!:!!|||:!!|||||| !! !|||! !!!:||||||||||| ThrLeuGluValGlnGlnSerSerSerIleHisMetLeuIleIleCysValLysLy 1052619 : ACTCTGGAGGTTCAACAAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAA : 1052563 338 : sTyrTyrAlaValThrArgLeuAlaMetAspValIleAspAlaThrGlnTyrIleV : 356 | ! !:!!! !|||! ! ! ||| ! !:!|||| sGlnLeuLeuLeuArgArg******GluAspPheAlaIleTyrAspTyrPheIleV 1052562 : ACAGCTACTACTGAGGAGGTGATAAGaagattttgcaatttatgatTACTTTATCG : 1052506 357 : al-----TrpPheThrIleLeuTyrSerSerIleAspLeuValLeuCysGlyLeuA : 373 ||#####! !|||.!!|||:!!!:!!!!! ! ! ! !|||:!! !|||!!!. al#####LeuPheAlaIleIlePheArgTyrAlaLysGluValValAspGlyPheA 1052505 : TAACTGATTGTTTGCCATAATTTTTAGGTACGCCAAAGAAGTGGTTGACGGTTTTC : 1052450 374 : snIleIleGlyArgGlnProPheAlaIleLysLeuGlnPheIlePheMetAlaGly : 391 ..:!!|||! !! !.!. !!.!.|||!!:!..:!! ! !:!! !:!:::!.!! rgLeuIleValLeuAsnAlaIleAlaMetSerIleLeuAlaLeuThrLeuSerSer 1052449 : GGCTTATAGTACTCAACGCTATAGCAATGAGCATTTTGGCTCTTACTCTAAGTAGT : 1052396 392 : ThrIleLeuMetGln >>>> Target Intron 1 >>>> ValLeuMetCys : 400 ! !! !|||!!:..! 202 bp |||...||| IleThrLeuIleMet++ +-TyrLeuPheCys 1052395 : ATTACATTAATAATGgt.........................attatttattttgt : 1052167 401 : AlaLeuProAlaAspValLeuIleAsnMetSerThrAsnAlaValArgSerAlaTy : 419 :!! ! ! ! !!! ! ! !! !|||.!!!!.!.! !!:!|||!.!|| ***Ile***LeuIlePheArgAspTyr***SerAlaLysValSerGlnSerValTy 1052166 : tgaaTATAATTGATCTTCCGTGATTATTAGAGTGCAAAGGTTTCACAAAGTGTGTA : 1052110 420 : rGluSerThrTrpTyrAspGlnValLeuGlyValGlnLysThrValLeuArgIleL : 438 |!!:! !|||||||||! |||..!||| :::||||||...|||||| |||| rAspLeuThrTrpTyrGlyGlnThrLeuGluMetGlnLysAsnValLeuTyrIleL 1052109 : TGATTTAACGTGGTACGGACAAACATtggaaatgcagaaaaatgtattatacatat : 1052053 439 : euValProGlnAlaProIleIleIleSerIleLysCysPheMetProArgLeuSer : 456 |||||! !|||! !|||:!!|||:!:|||:!!!..|||.!!:!!|||..!|||||| euValHisGlnGluProValIleLeuSerValSerCysIleValProGluLeuSer 1052052 : tgGTACACCAAGAACCGGTAATTCTGTCAGTTAGTTGCATCGTGCCGGAGCTTTCT : 1051999 457 : LeuGluTyrTyrCysSerVal : 463 |||...||||||||||||||| LeuArgTyrTyrCysSerVal 1051998 : CTTCGTTATTATTGCTCGGTA : 1051976 vulgar: Lalb_14672 206 463 . KQ414618.1 1052953 1051975 - 409 M 150 450 F 0 5 M 40 120 5 0 2 I 0 198 3 0 2 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1051976 1052953 409 - . gene_id 3 ; sequence Lalb_14672 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1052379 1052953 . - . KQ414618.1 exonerate:protein2genome:local exon 1052379 1052953 . - . insertions 0 ; deletions 0 ; frameshifts 5 KQ414618.1 exonerate:protein2genome:local splice5 1052377 1052378 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052177 1052378 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052177 1052178 . - . intron_id 0 ; splice_site "at" KQ414618.1 exonerate:protein2genome:local cds 1051976 1052176 . - . KQ414618.1 exonerate:protein2genome:local exon 1051976 1052176 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1051976 1052953 409 - . alignment_id 3 ; Query Lalb_14672 ; Align 1052954 207 450 ; Align 1052499 357 120 ; Align 1052177 397 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14672 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 379 Query range: 0 -> 140 Target range: 1029185 -> 1028765 1 : AspValLeuGlnArgLeuIleGluGluMetLysAlaSerLeuLysAsnAlaGlnSe : 19 |||..!||||||!:!|||||||||||||||||| !!!!! !:!!!..|||:!! ! AspThrLeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysPr 1029185 : GACACGTTGCAGAAACTAATCGAAGAAATGAAGATTTGCTGTGAAACAGCGAAACC : 1029131 20 : rTyrGluArgAsnIleTyrGlnArgTyrValAspThrTyrTyrLysPheTyrGlyL : 38 !|||||||||:!!:!!!:!|||||||||||||||! !|||! ! !||||||! ! oTyrGluArgAspValPheGlnArgTyrValAspLysTyrSerLeuPheTyrValT 1029130 : ATACGAAAGAGACGTCTTTCAACGATACGTCGATAAATACTCTTTATTTTACGTAA : 1029074 39 : euThrValMetTrpSerTyrValSerProValValValValValGlySerIlePhe : 56 ! ! ! !|||! !|||:!!!!! !!|||:!!:!!|||:!!|||||| .!! hrCysSerSerTrpPheTyrLeuThrAlaValIleMetValLeuGlySerArgIle 1029073 : CATGTTCGTCGTGGTTTTACTTAACAGCAGTTATTATGGTTCTGGGAAGTCGGATT : 1029020 57 : LeuProGlnProPheProThrValSerGluTyrProPheArgValAspTyrGluPr : 75 :!! !!.!.|||||||||||| !:!!! !|||||||||! !|||:!!!:!||||| IleSerAspProPheProThrAsnAlaValTyrProPheProValAsnPheGluPr 1029019 : ATATCTGATCCTTTTCCAACCAACGCCGTATATCCATTCCCTGTTAACTTTGAACC : 1028963 76 : oValArgIleIleIlePheValHisGlnAlaIleAlaGlyPheGlnCysSerAlaA : 94 |:!!|||! !|||||||||:!!||||||:!!.!!!.!|||.!.||||||:!!||| oLeuArgSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaH 1028962 : CTTGAGAAGTATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCAC : 1028906 95 : laValSerLeuAsnMetPheAlaAlaLeuLeuLeuLeuTyrThrAlaAlaLysTyr : 112 !..!|||:!!|||:!!.!..!!|||||||||||||||!:!.!!||||||:::!:! isThrSerMetAsnValLeuThrAlaLeuLeuLeuLeuPheAlaAlaAlaArgPhe 1028905 : ACACTAGTATGAATGTGCTAACTGCATTGTTATTACTATTTGCTGCAGCTCGTTTC : 1028852 113 : GluIleLeuMetIleAspMetArgArgAlaThrSerValAspAlaLeuIleAlaCy : 131 ||||||||||||!!:!!::!!|||!.!!.!!:!..!:!!!!:.!!|||||| !|| GluIleLeuMetMetGluLeuArgAsnValSerAspIleGluThrLeuIleLysCy 1028851 : GAGATACTGATGATGGAGCTGAGGAATGTCAGTGACATTGAAACACTGATTAAATG : 1028795 132 : sValGluLysTyrGlnAlaValAsnArg : 140 |:!!:!!||||||..! !|||...||| sMetLysLysTyrSerIleValArgArg 1028794 : TATGAAAAAGTATTCGATCGTACGGAGG : 1028766 vulgar: Lalb_14672 0 140 . KQ414618.1 1029185 1028765 - 379 M 140 420 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028766 1029185 379 - . gene_id 4 ; sequence Lalb_14672 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028766 1029185 . - . KQ414618.1 exonerate:protein2genome:local exon 1028766 1029185 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028766 1029185 379 - . alignment_id 4 ; Query Lalb_14672 ; Align 1029186 1 420 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14672 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 362 Query range: 0 -> 140 Target range: 1038352 -> 1037932 1 : AspValLeuGlnArgLeuIleGluGluMetLysAlaSerLeuLysAsnAlaGlnSe : 19 |||..!||||||!:!|||||||||||||||||| !!!!! !:!!!..|||:!! ! AspThrLeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysPr 1038352 : GACACGTTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACC : 1038298 20 : rTyrGluArgAsnIleTyrGlnArgTyrValAspThrTyrTyrLysPheTyrGlyL : 38 !|||||||||:!!:!!!:!||||||||||||:!!! !:!: |||||| oTyrGluArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleT 1038297 : ATACGAAAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataa : 1038241 39 : euThrValMetTrpSerTyrValSerProValValValValValGlySerIlePhe : 56 ! ! |||! !|||:!!!!! !!:!!:!!:!!|||:!!||||||:!:.!! hrCysSerSerTrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeu 1038240 : catGTTCGTCATGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTT : 1038187 57 : LeuProGlnProPheProThrValSerGluTyrProPheArgValAspTyrGluPr : 75 :!! !!.!.|||||||||||| !:!!! !|||||||||! !|||:!!!:!||||| IleSerAspProPheProThrAsnAlaValTyrProPheProValAsnPheGluPr 1038186 : ATATCCGATCCTTTTCCAACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACC : 1038130 76 : oValArgIleIleIlePheValHisGlnAlaIleAlaGlyPheGlnCysSerAlaA : 94 |:!!|||! !|||||||||:!!||||||:!!.!!!.!|||.!.||||||:!!||| oLeuArgSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaH 1038129 : CTTGAGAAGCATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCAC : 1038073 95 : laValSerLeuAsnMetPheAlaAlaLeuLeuLeuLeuTyrThrAlaAlaLysTyr : 112 !!.!|||:!!|||:!!.!!:!!|||||||||||||||!:!|||.!!|||:::::: isAlaSerMetAsnValLeuSerAlaLeuLeuLeuLeuPheThrThrAlaArgPhe 1038072 : ACGCTAGTATGAATGTGCTTTCTGCACTGTTATTGCTATTCACTACAGCtcgtttc : 1038019 113 : GluIleLeuMetIleAspMetArgArgAlaThrSerValAspAlaLeuIleAlaCy : 131 ||||||||||||! !!::!!|||!.!!.!!.!..!:!!!!:.!!|||||| ! ! GluIleLeuMetThrGluLeuArgAsnValAsnAspIleGluThrLeuIleLysSe 1038018 : gaaatattgaTGACGGAGTTGAGGAATGTCAATGATATCGAAACACTGATTAAGAG : 1037962 132 : sValGluLysTyrGlnAlaValAsnArg : 140 !:!!:!!||||||..!.!!|||...||| rMetLysLysTyrSerThrValArgArg 1037961 : TATGAAAAAGTATTCGACTGTGCGGAGG : 1037933 vulgar: Lalb_14672 0 140 . KQ414618.1 1038352 1037932 - 362 M 140 420 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037933 1038352 362 - . gene_id 5 ; sequence Lalb_14672 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1037933 1038352 . - . KQ414618.1 exonerate:protein2genome:local exon 1037933 1038352 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037933 1038352 362 - . alignment_id 5 ; Query Lalb_14672 ; Align 1038353 1 420 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14672 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 303 Query range: 2 -> 153 Target range: 1052956 -> 1052503 3 : LeuGlnArgLeuIleGluGluMetLysAlaSerLeuLysAsnAlaGlnSerTyrGl : 21 |||||||||:!!||| !||||||! .!!! !:!!|||.!.||||||..!!:!|| LeuGlnArgIleIleThrGluMetIleThrTyrValLysGluAlaGlnGlnPheGl 1052956 : TTACAGCGAATAATTACAGAAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGA : 1052902 22 : uArgAsnIleTyrGlnArgTyrValAspThrTyrTyrLysPheTyrGlyLeuThrV : 40 ||||.!.||| !!!.!.!|||:!!.!.! !! ! ! ||||||||| !:!!: uArgGluIleLeuHisAsnTyrIleGlnLysCysLysLeuPheTyrGlyGlySerL 1052901 : AAGGGAAATTCTCCACAACTATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGT : 1052845 41 : alMetTrpSerTyrValSerProValValValValValGlySerIlePheLeuPro : 58 !!!!:|||!!!|||:!!!!! !!..! ! !!|||:!!||| !!:!! !!|||||| euIleTrpThrTyrLeuCysAlaThrCysPheValLeuGlyProValValLeuPro 1052844 : TAATTTGGACATACCTCTGTGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCA : 1052791 59 : GlnProPheProThrValSerGluTyrProPheArgValAspTyrGluProValAr : 77 .!.|||||||||!:! !:!!||||||||||||||||||:!! ! !|||:!!!. AsnProPheProSerSerAlaGluTyrProPheArgValAsnArgThrProMetAs 1052790 : AATCCTTTTCCCAGCAGTGCAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAA : 1052734 78 : gIleIleIlePheValHisGlnAlaIleAlaGlyPheGlnCysSerAlaAlaValS : 96 ! !|||:!!!:!:!!||||||:!!.!! !.!!||||||! !|||||| !:!!! nAlaIleValTyrLeuHisGlnSerPheIleSerPheGlnTyrSerAlaHisIleC 1052733 : TGCTATTGTCTACCTGCACCAATCTTTCATAAGCTTTCAGTACAGTGCACACATAT : 1052677 97 : erLeuAsnMetPheAlaAlaLeuLeuLeuLeuTyrThrAlaAlaLysTyrGluIle : 114 !!:!!!:!!!:|||!.!||||||||||||! ! !|||||||||!:!!:!.!. ! ysValSerIlePheGlyAlaLeuLeuLeuTrpIleThrAlaAlaArgPheHisCys 1052676 : GTGTAAGCATTTTCGGAGCTCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGC : 1052623 115 : LeuMetIleAspMetArgArgAlaThrSerValAspAlaLeuIleAlaCysValGl : 133 |||! :!:!!::!:!:!!:!::!:!!|||:!! !! !|||||| !||||||:! LeuThrLeuGluValGlnGlnSerSerSerIleHisMetLeuIleIleCysValLy 1052622 : TTAACTCTGGAGGTTCAACAAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAA : 1052566 134 : uLysTyrGlnAlaValAsnArgPheAlaLysAspValValThrValThrArgTyrI : 152 !||| ! ! ! !:!!!..|||! !:::||| ... !!:!| sLysGlnLeuLeuLeuArgArg******GluAspPheAlaIleTyrAspTyrPheI 1052565 : GAAACAGCTACTACTGAGGAGGTGATAAGaagattttgcaatttatgatTACTTTA : 1052509 153 : leVal : 153 ||||| leVal 1052508 : TCGTA : 1052504 vulgar: Lalb_14672 2 153 . KQ414618.1 1052956 1052503 - 303 M 151 453 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1052504 1052956 303 - . gene_id 6 ; sequence Lalb_14672 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1052504 1052956 . - . KQ414618.1 exonerate:protein2genome:local exon 1052504 1052956 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1052504 1052956 303 - . alignment_id 6 ; Query Lalb_14672 ; Align 1052957 3 453 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14672 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 248 Query range: 183 -> 344 Target range: 1058212 -> 1057729 184 : ValValLeuSerTrpThrGlyLeuMetGluValPheMetCysAlaLeuProAlaAs : 202 |||:!!! !! ! ||| !|||:::...:::...::: !! !|||!.! ! ValIleSerIleGluThrPheLeuLeuAsnIleLeuIleGluLeuSerProValLy 1058212 : GTGATTTCGATAGAAACATTTCtgttaaacattttaattgaacTGTCACCGGTGAA : 1058158 203 : pArgLeuIleAsnMetArgLeuIleGluHisMetThrAlaSerLeuLysAsnAlaL : 221 !.! ! !:::..! !||| ! !!||| ! !! !! !!:! !!|||! sAsnAsnAlaSerGlnValLeuTyrPheAspMetGluAsnPheCysArgTyrAlaT 1058157 : AAACAATGCTTCGCAGGTATTGTACTTCGACATGGAGAATTTCTGCAGATACGCCA : 1058101 222 : ysSerTyrGluArgAsnValTyrGlnArgTyrValAsnThrTyrTyrArgTyrTyr : 239 ||| |||::: ||| ||||||||||||:!!! !||| ! !!:!:!! hrSerLysGluLysValValLeuGlnArgTyrValAspArgTyrLysTyrPheHis 1058100 : CCtcgaaggaaaaagttgtcCTGCAACGATACGTGGACAGATACAAATACTTTCAT : 1058047 240 : GlyLeuThrValMetTrpAsnTyrMetCysThrMetValValIleValAlaSerIl : 258 |||:!! !:!!:!:||| !!:!:!: |||!!: !!|||||| !!.! !!:! GlyIleTyrIleLeuTrpCysPheLeuThrThrIlePheValIleSerGlyProLe 1058046 : GGGATTTATATATTATGGTGCTTCCTCACGACCATCTTCGTCATAAGTGGTCCATT : 1057990 259 : ePheLeuProGlnProPheProThrIleSerGluTyrProPheAspValTyrTyrG : 277 :!:!! !|||||| !!||||||||| !:!! !|||||||||.!.||| ! :!! uTyrSerProGlnThrPheProThrHisAlaIleTyrProPheGlnValGluHisT 1057989 : GTACTCACCACAGACGTTCCCCACTCATGCGATATATCCTTTCCAAGTGGAACATA : 1057933 278 : luProValArgThrIleIlePheLeuHisGlnAlaPheValGlyPheGlnCysSer : 295 !! ! !!!:: :::|||:::...||||||:!!!!.||||||||||||...||| hrLeuPheLysIleValIleTyrPheHisGlnSerLeuValGlyPheGlnAlaSer 1057932 : CACTGTTCAagattgttatttatttccatCAGTCGTTAGTTGGTTTTCAGGCGTCC : 1057879 296 : AlaSerValSerLeuAsnMetPheAlaAlaLeuLeuLeuLeuPheAlaAlaAlaAr : 314 |||.!!:!!:!!:!!:!!! !||||||||||||! !!:!||||||||||| AlaGlyMetAlaIleAspThrGlnIleAlaLeuLeuLeuArgTyrAlaAlaAlaAr 1057878 : GCTGGTATGGCCATCGACACTCAAATTGCTCTTCTTCTGCGATACGCGGCTGCCAG : 1057822 315 : gTyrGluIleLeuMetIleAspLeuArgGluSerThrSerIleAspAlaLeuThrM : 333 |!:!|||:!!||| ! !!!::!!|||.!.:!!!.!!!! ! !! !!!!!.! gPheGluLeuLeuGlyAsnGluMetArgAsnAlaAsnThrHisCysGluPheAsnA 1057821 : GTTCGAGCTATTGGGAAACGAGATGCGAAATGCAAATACTCACTGTGAATTCAATG : 1057765 334 : etCysValLysLysTyrTyrAlaValThrArgLeu : 344 |||:!!:!!|||:!! !! !:!! !|||||| laCysIleGluLysHisSerGluLeuLeuArgLeu 1057764 : CCTGCATAGAGAAGCACAGTGAACTTCTCAGgtta : 1057730 vulgar: Lalb_14672 183 344 . KQ414618.1 1058212 1057729 - 248 M 161 483 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057730 1058212 248 - . gene_id 7 ; sequence Lalb_14672 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1057730 1058212 . - . KQ414618.1 exonerate:protein2genome:local exon 1057730 1058212 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057730 1058212 248 - . alignment_id 7 ; Query Lalb_14672 ; Align 1058213 184 483 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14672 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 173 -> 207 Target range: 1036027 -> 1035925 174 : ArgGlnProPheIleValLysLeuGlnPheValValLeuSerTrpThrGlyLeuMe : 192 !:!||||||!!. !||||||:!!||||||:!!..!:!!||| ! |||!.!|||:! LysGlnProLeuAlaValLysValGlnPheLeuThrMetSerGlyThrAlaLeuLe 1036027 : AAACAACCGTTGGCTGTTAAAGTTCAATTTCTTACTATGAGTGGAACCGCGTTGCT : 1035973 193 : tGluValPheMetCysAlaLeuProAlaAspArgLeuIleAsnMet : 207 !|||||||||||||||:!!||||||||||||!.!||||||:!!||| uGluValPheMetCysSerLeuProAlaAspHisLeuIleAspMet 1035972 : GGAAGTGTTTATGTGTTCACTACCAGCTGACCATTTGATAGATATG : 1035926 vulgar: Lalb_14672 173 207 . KQ414618.1 1036027 1035925 - 115 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1035926 1036027 115 - . gene_id 8 ; sequence Lalb_14672 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1035926 1036027 . - . KQ414618.1 exonerate:protein2genome:local exon 1035926 1036027 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1035926 1036027 115 - . alignment_id 8 ; Query Lalb_14672 ; Align 1036028 174 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14672 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 173 -> 207 Target range: 1028388 -> 1028286 174 : ArgGlnProPheIleValLysLeuGlnPheValValLeuSerTrpThrGlyLeuMe : 192 !:!||||||||| !|||||| !||||||:!!..!:!!||| ! |||!.!|||:! LysGlnProPheAlaValLysAlaGlnPheLeuThrValSerGlyThrAlaLeuLe 1028388 : AAACAACCGTTCGCTGTGAAAGCTCAGTTTCTTACTGTGAGTGGAACCGCTTTGCT : 1028334 193 : tGluValPheMetCysAlaLeuProAlaAspArgLeuIleAsnMet : 207 !||||||.!!||||||:!!||||||||||||!.!||||||:!!||| uGluValLeuMetCysSerLeuProAlaAspHisLeuIleAspMet 1028333 : GGAAGTGCTTATGTGTTCACTACCAGCTGACCATTTGATAGATATG : 1028287 vulgar: Lalb_14672 173 207 . KQ414618.1 1028388 1028286 - 112 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028287 1028388 112 - . gene_id 9 ; sequence Lalb_14672 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028287 1028388 . - . KQ414618.1 exonerate:protein2genome:local exon 1028287 1028388 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028287 1028388 112 - . alignment_id 9 ; Query Lalb_14672 ; Align 1028389 174 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14671 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 633 Query range: 0 -> 301 Target range: 1030017 -> 1028286 1 : MetPheGluAsnValMetProGluLysAlaMetValPheIleArgHisSerValVa : 19 |||!!.:!! !! !! ||||||!:!|||!!: !.!!:!!!:! !! !..!!. MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1030017 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1029963 20 : lLeuIleCysGlyTrpProLeuProSerMetAlaThrLysAlaGlnValLeuCysT : 38 !!!!! !||| !!|||||||||||||||! !|||||||||:!!! !|||||| ! aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1029962 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1029906 39 : yrArgIleLeuLysValLeuSerAlaIleSerAlaLeuAlaLeuPheLeuProVal : 56 :!!:!||||||!:! !!!! ! !:!!!:!||||||!.!||||||||||||:!! heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1029905 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1029852 57 : LeuAsnAlaAlaIleLeuHisPheGlyAspProThrAsnPheSerLysAlaValIl : 75 ||| !!||| ! !:!!||| ..!||| !! !||| !!:!!||||||!.! LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1029851 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1029795 76 : eMetAlaIleAlaCysAlaHisValLeuThrGlnIleValValSerSerIleGlnH : 94 !:!!.!!:!!||| ......:::... ||| ! !!|||!!!! ! !|||: sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1029794 : CCTGACGCTTGCCctcgtgcaaatatttttccagacTTTCGTTTGCATCGGCCAAT : 1029738 95 : isAspArgTrpGln >>>> Target Intron 1 >>>> ArgLeuIleGluH : 103 !!|||!.!!::||| 550 bp !:!|||||||||. yrAspHisPheGln++ ++LysLeuIleGluG 1029737 : ACGATCATTTTCAGgt.........................agAAACTAATCGAAG : 1029161 104 : isMetThrAlaSerLeuLysAsnAlaLysSerTyrGluArgAsnValTyrGlnArg : 121 !.|||! ! !!!!! !:!!!..|||||| !!|||||||||:!!|||!:!|||||| luMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheGlnArg 1029160 : AAATGAAGATTTGCTGTGAAACAGCGAAACCATACGAAAGAGACGTCTTTCAACGA : 1029107 122 : TyrValAspSerTyrCysArgPheTyrAlaLeuThrValMetTrpPheTyrMetSe : 140 |||||||||!.!|||! ! !||||||!.! ! ! ! !|||||||||:!:!! TyrValAspLysTyrSerLeuPheTyrValThrCysSerSerTrpPheTyrLeuTh 1029106 : TACGTCGATAAATACTCTTTATTTTACGTAACATGTTCGTCGTGGTTTTACTTAAC : 1029050 141 : rProIleValPheValValGlyThrIlePheLeuProGlnProPheProAlaIleS : 159 ! !!:!!:!!.!.|||:!!|||!:! .!!:!! !!.!.|||||||||.!!! !: rAlaValIleMetValLeuGlySerArgIleIleSerAspProPheProThrAsnA 1029049 : AGCAGTTATTATGGTTCTGGGAAGTCGGATTATATCTGATCCTTTTCCAACCAACG : 1028993 160 : erGluTyrProPheArgValAsnTyrGluProValLysThrIleIleIleLeuHis : 177 !!! !|||||||||! !||||||!:!||||||:!!!:!!:!||||||.!!:!!||| laValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHis 1028992 : CCGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGTATCATTTTTATGCAC : 1028939 178 : GlnAlaLeuValGlyPheGlnCysSerAlaSerValSerMetAsnMetPheAlaAl : 196 |||:!!!!!||||||.!.||||||:!!||| !..!|||||||||:!!.!..!!|| GlnSerPheValGlyIleGlnCysAlaAlaHisThrSerMetAsnValLeuThrAl 1028938 : CAATCGTTCGTTGGCATACAGTGTGCTGCACACACTAGTATGAATGTGCTAACTGC : 1028882 197 : aLeuLeuLeuLeuTyrValAlaAlaArgTyrGluIleLeuMetIleAspLeuArgG : 215 |||||||||||||!:!!.!|||||||||!:!||||||||||||!!:!!:||||||. aLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuMetMetGluLeuArgA 1028881 : ATTGTTATTACTATTTGCTGCAGCTCGTTTCGAGATACTGATGATGGAGCTGAGGA : 1028825 216 : luSerThrSerIleAspAlaLeuThrMetCysValLysGluTyrTyrSerValThr : 233 !. !!:!..!|||!!:.!!|||! !! |||:!!|||:!!|||! ! !||| ! snValSerAspIleGluThrLeuIleLysCysMetLysLysTyrSerIleValArg 1028824 : ATGTCAGTGACATTGAAACACTGATTAAATGTATGAAAAAGTATTCGATCGTACGG : 1028771 234 : {Ar} >>>> Target Intron 2 >>>> {g}PheAlaLysAspValThrAs : 241 {||} 205 bp {|}!:!|||! !||||||..! {Ar}++ ++{g}TyrAlaThrAspValValTh 1028770 : {AG}gt.........................ag{G}TACGCAACGGACGTGGTTAC : 1028542 242 : pAlaThrGlnTyrValValTrpPheThrIleLeuTyrSerSerIleAspLeuValL : 260 !.!!! !!:! !:!!||| !.!!|||:!!:!! !!!!!!:!:! ! !|||! rThrIleArgLeuLeuValLeuIleThrValIleThrCysThrValAlaCysValP 1028541 : CACAATTCGACTTCTGGTTCTGATTACGGTAATCACATGCACTGTGGCGTGTGTAT : 1028485 261 : euCysGlyLeuAsnIleIleGly >>>> Target Intron 3 >>>> ArgG : 269 !!..!|||:!!|||:!:|||||| 73 bp !:!| heAlaGlyIleAsnLeuIleGly++ ++LysG 1028484 : TTGCTGGAATTAACTTGATCGGAgt.........................agAAAC : 1028385 270 : lnProValValValLysLeuGlnPheIleThrLeuSerTrpThrAlaMetMetGlu : 287 ||||| !!!.!|||||| !||||||:!!|||:!!||| ! ||||||:!!:!!||| lnProPheAlaValLysAlaGlnPheLeuThrValSerGlyThrAlaLeuLeuGlu 1028384 : AACCGTTCGCTGTGAAAGCTCAGTTTCTTACTGTGAGTGGAACCGCTTTGCTGGAA : 1028331 288 : ValPheMetCysAlaLeuProAlaAspThrLeuIleAsnMet : 301 |||.!!||||||:!!|||||||||||| !||||||:!!||| ValLeuMetCysSerLeuProAlaAspHisLeuIleAspMet 1028330 : GTGCTTATGTGTTCACTACCAGCTGACCATTTGATAGATATG : 1028287 vulgar: Lalb_14671 0 301 . KQ414618.1 1030017 1028286 - 633 M 98 294 5 0 2 I 0 546 3 0 2 M 135 405 S 0 2 5 0 2 I 0 201 3 0 2 S 1 1 M 33 99 5 0 2 I 0 69 3 0 2 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028287 1030017 633 - . gene_id 1 ; sequence Lalb_14671 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1029724 1030017 . - . KQ414618.1 exonerate:protein2genome:local exon 1029724 1030017 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1029722 1029723 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1029174 1029723 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1029174 1029175 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028767 1029173 . - . KQ414618.1 exonerate:protein2genome:local exon 1028767 1029173 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1028765 1028766 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1028562 1028766 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1028562 1028563 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028462 1028561 . - . KQ414618.1 exonerate:protein2genome:local exon 1028462 1028561 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1028460 1028461 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1028389 1028461 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1028389 1028390 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028287 1028388 . - . KQ414618.1 exonerate:protein2genome:local exon 1028287 1028388 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028287 1030017 633 - . alignment_id 1 ; Query Lalb_14671 ; Align 1030018 1 294 ; Align 1029174 99 405 ; Align 1028561 235 99 ; Align 1028389 268 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14671 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 593 Query range: 0 -> 355 Target range: 1053857 -> 1051972 1 : MetPheGluAsnValMetProGluLysAlaMetValPheIleArgHisSerValVa : 19 |||!!.:!!.!.:!!! |||||||||!.!!!:! !.!!||| !! !||||||!. MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : lLeuIleCysGlyTrpProLeuProSerMetAlaThrLysAlaGlnValLeuCysT : 38 !||| ! ! !!||||||||| !!||| |||!:!||||||||||||:::...: aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 39 : yrArgIleLeuLysValLeuSerAlaIleSerAlaLeuAlaLeuPheLeuProVal : 56 :::::||||||:::::: |||||||||||||||||| !|||.!!||||||:!! heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 57 : LeuAsnAlaAlaIleLeuHisPheGlyAspProThrAsnPheSerLysAlaValIl : 75 ||| !!:!!.!! !|||||||||! !||| !! ! !.!!|||:!!::!:!! LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 76 : eMetAlaIleAlaCysAlaHisValLeuThrGlnIleValValSerSerIleGlnH : 94 !:!!:!!!!:!.! ! !!!.:!!:!!! !|||! !|||:!!!!!! !! !.!.: sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCysPheThrAsnT 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGTTTCACCAACT : 1053578 95 : isAspArgTrpGln >>>> Target Intron 1 >>>> ArgLeuIleGluH : 103 !!|||! ! !||| 613 bp |||:!!||| !. yrAspLeuLeuGln++ ++ArgIleIleThrG 1053577 : ACGACCTTCTGCAGgt.........................agCGAATAATTACAG : 1052938 104 : isMetThrAlaSerLeuLysAsnAlaLysSerTyrGluArgAsnValTyrGlnArg : 121 !.|||! !.!!! !:!!|||.!.|||:!!..!!:!||||||.!.:!! !!!.!.! luMetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLeuHisAsn 1052937 : AAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCACAAC : 1052884 122 : TyrValAspSerTyrCysArgPheTyrAlaLeuThrValMetTrpPheTyrMetSe : 140 |||:!!.!.!.!! ! ! !||||||!.! !:!!:!!!!:||| |||:!:!! TyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrTyrLeuCy 1052883 : TATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACATACCTCTG : 1052827 141 : rProIleValPheValValGlyThrIlePheLeuProGlnProPheProAlaIleS : 159 ! !!! ! !||||||:!!||| !!:!! !!||||||.!.|||||||||::!! !: sAlaThrCysPheValLeuGlyProValValLeuProAsnProPheProSerSerA 1052826 : TGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGCAGTG : 1052770 160 : erGluTyrProPheArgValAsnTyrGluProValLysThrIleIleIleLeuHis : 177 !!||||||||||||||||||||| ! !|||:!!!!..!!|||:!! !|||||| laGluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyrLeuHis 1052769 : CAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTACCTGCAC : 1052716 178 : GlnAlaLeuValGlyPheGlnCysSerAlaSerValSerMetAsnMetPheAlaAl : 196 |||:!!!!!:!!.!!||||||! !|||||| !:!!!!!:!:!:!!!:|||!.!|| GlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePheGlyAl 1052715 : CAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTTCGGAGC : 1052659 197 : aLeuLeuLeuLeuTyrValAlaAlaArgTyrGluIleLeuMetIleAspLeuArgG : 215 ||||||||||! ! !..!|||||||||!:!.!. !|||! :!:!!::!!!:!: aLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluValGlnG 1052658 : TCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTTCAAC : 1052602 216 : luSerThrSerIleAspAlaLeuThrMetCysValLysGluTyrTyrSerValThr : 233 !!|||:!!|||||| !! !|||! !!!:|||||||||:!! ! !:!!! ! lnSerSerSerIleHisMetLeuIleIleCysValLysLysGlnLeuLeuLeuArg 1052601 : AAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCTACTACTGAGG : 1052548 234 : ArgPheAlaLysAspValThrAspAlaThrGlnTyrValVal-----TrpPheThr : 250 |||! !:::||| ... ! !:!:!!|||#####! !|||.!! Arg******GluAspPheAlaIleTyrAspTyrPheIleVal#####LeuPheAla 1052547 : AGGTGATAAGaagattttgcaatttatgatTACTTTATCGTAACTGATTGTTTGCC : 1052492 251 : IleLeuTyrSerSerIleAspLeuValLeuCysGlyLeuAsnIleIleGlyArgGl : 269 |||:!!!:!!!!! ! ! ! !|||:!! !|||!!!...:!!|||! !! !.! IleIlePheArgTyrAlaLysGluValValAspGlyPheArgLeuIleValLeuAs 1052491 : ATAATTTTTAGGTACGCCAAAGAAGTGGTTGACGGTTTTCGGCTTATAGTACTCAA : 1052435 270 : nProValValValLysLeuGlnPheIleThrLeuSerTrpThrAlaMetMetGlu : 288 . !!:!!!.!:!!!..:!! ! !:!!||||||||| ! ! !.!!:!:!!: ! nAlaIleAlaMetSerIleLeuAlaLeuThrLeuSerSerIleThrLeuIleMet+ 1052434 : CGCTATAGCAATGAGCATTTTGGCTCTTACTCTAAGTAGTATTACATTAATAATGg : 1052378 289 : >>>> Target Intron 2 >>>> ValPheMetCysAlaLeuProAlaAspT : 297 202 bp ......||| :!! ! ! ! + +-TyrLeuPheCys***Ile***LeuIleP 1052377 : t.........................attatttattttgttgaaTATAATTGATCT : 1052149 298 : hrLeuIleAsnMetSerThrAsnAlaValArgSerValTyrGluSerThrTrpTyr : 315 !! ! ! !! !|||.!!!!.!.! !!:!|||||||||!!:! !||||||||| heArgAspTyr***SerAlaLysValSerGlnSerValTyrAspLeuThrTrpTyr 1052148 : TCCGTGATTATTAGAGTGCAAAGGTTTCACAAAGTGTGTATGATTTAACGTGGTAC : 1052095 316 : AsnGlnValLeuGlyValGlnLysThrValLeuArgIleLeuValProGlnAlaPr : 334 ...|||..!||| :::||||||...|||||| |||||||||! !|||! !|| GlyGlnThrLeuGluMetGlnLysAsnValLeuTyrIleLeuValHisGlnGluPr 1052094 : GGACAAACATtggaaatgcagaaaaatgtattatacatattgGTACACCAAGAACC : 1052038 335 : oIleIleIleSerLeuLysCysValMetProArgLeuSerLeuGluTyrTyrCysS : 353 |:!!|||:!:|||:!!!..|||:!!:!!|||..!|||||||||...|||||||||| oValIleLeuSerValSerCysIleValProGluLeuSerLeuArgTyrTyrCysS 1052037 : GGTAATTCTGTCAGTTAGTTGCATCGTGCCGGAGCTTTCTCTTCGTTATTATTGCT : 1051981 354 : erValArg : 355 |||||||| erValArg 1051980 : CGGTAAGA : 1051973 vulgar: Lalb_14671 0 355 . KQ414618.1 1053857 1051972 - 593 M 98 294 5 0 2 I 0 609 3 0 2 M 149 447 F 0 5 M 40 120 5 0 2 I 0 198 3 0 2 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1051973 1053857 593 - . gene_id 2 ; sequence Lalb_14671 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1053564 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053564 1053857 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1053562 1053563 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052951 1053563 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052951 1052952 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052379 1052950 . - . KQ414618.1 exonerate:protein2genome:local exon 1052379 1052950 . - . insertions 0 ; deletions 0 ; frameshifts 5 KQ414618.1 exonerate:protein2genome:local splice5 1052377 1052378 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052177 1052378 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1052177 1052178 . - . intron_id 1 ; splice_site "at" KQ414618.1 exonerate:protein2genome:local cds 1051973 1052176 . - . KQ414618.1 exonerate:protein2genome:local exon 1051973 1052176 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1051973 1053857 593 - . alignment_id 2 ; Query Lalb_14671 ; Align 1053858 1 294 ; Align 1052951 99 447 ; Align 1052499 248 120 ; Align 1052177 288 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14671 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 564 Query range: 0 -> 301 Target range: 1039184 -> 1035925 1 : MetPheGluAsnValMetProGluLysAlaMetValPheIleArgHisSerValVa : 19 |||!!.:!! !! !! ||||||!:!|||!!: !.!!:!!!:! !! !..!!. MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1039184 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1039130 20 : lLeuIleCysGlyTrpProLeuProSerMetAlaThrLysAlaGlnValLeuCysT : 38 !!!!! !||| !!|||||||||||||||! !|||||||||:!!! !|||||| ! aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1039129 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1039073 39 : yrArgIleLeuLysValLeuSerAlaIleSerAlaLeuAlaLeuPheLeuProVal : 56 :!!:!||||||!:! !!!! ! !:!!!:!||||||!.!||||||||||||:!! heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1039072 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1039019 57 : LeuAsnAlaAlaIleLeuHisPheGlyAspProThrAsnPheSerLysAlaValIl : 75 ||| !!||| ! !:!!||| ..!||| !! !||| !!:!!||||||!.! LeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCy 1039018 : TTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTG : 1038962 76 : eMetAlaIleAlaCysAlaHisValLeuThrGlnIleValValSerSerIleGlnH : 94 !:!!.!!:!!||| ......:::... ||| |||!!!! ! !|||: sLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleGlyGlnT 1038961 : CCTGACGCTTGCTctcgtgcaaatatttttccaaactttcgttTGCATCGGTCAAT : 1038905 95 : is{A} >>>> Target Intron 1 >>>> {sp}ArgTrpGlnArgLeuIle : 101 !!{|} 550 bp {||}! !! !|||!:!|||||| yr{A}-+ -+{sp}ThrLeuGlnLysLeuIle 1038904 : AC{G}at.........................tg{AC}ACGTTGCAGAAACTAATC : 1038334 102 : GluHisMetThrAlaSerLeuLysAsnAlaLysSerTyrGluArgAsnValTyrGl : 120 |||.!.|||! ! !!!!! !:!!!..|||||| !!|||||||||:!!|||!:!|| GluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheGl 1038333 : GAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGACGTCTTCCA : 1038277 121 : nArgTyrValAspSerTyrCysArgPheTyrAlaLeuThrValMetTrpPheTyrM : 139 ||||||||||:!!!.!:!: |||||| ! ! |||||||||: nArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheTyrL 1038276 : ACGATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTTACT : 1038220 140 : etSerProIleValPheValValGlyThrIlePheLeuProGlnProPheProAla : 157 !:!!! !!|||:!!.!.|||:!!|||!:!:!:.!!:!! !!.!.|||||||||.!! euThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPheProThr 1038219 : TAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACC : 1038166 158 : IleSerGluTyrProPheArgValAsnTyrGluProValLysThrIleIleIleLe : 176 ! !:!!! !|||||||||! !||||||!:!||||||:!!!:!!:!||||||.!!:! AsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMe 1038165 : AACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTAT : 1038109 177 : uHisGlnAlaLeuValGlyPheGlnCysSerAlaSerValSerMetAsnMetPheA : 195 !||||||:!!!!!||||||.!.||||||:!!||| !!.!|||||||||:!!.!!: tHisGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuS 1038108 : GCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTT : 1038052 196 : laAlaLeuLeuLeuLeuTyrValAlaAlaArgTyrGluIleLeuMetIleAspLeu : 213 !!|||||||||||||||!:!..!.!!||||||:::||||||||||||! !!:||| erAlaLeuLeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeu 1038051 : CTGCACTGTTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTG : 1037998 214 : ArgGluSerThrSerIleAspAlaLeuThrMetCysValLys{Gl} >>>> Tar : 228 |||.!. !!.!..!|||!!:.!!|||! !! ! !!:!!|||{.!} ArgAsnValAsnAspIleGluThrLeuIleLysSerMetLys{As}++ 1037997 : AGGAATGTCAATGATATCGAAACACTGATTAAGAGTATGAAA{AA}gt........ : 1037949 229 : get Intron 2 >>>> {u}TyrTyrSerValThrArgPheAlaLysAspValT : 240 1733 bp {.} ! ! !|||!:!|||! !||||||. ++{n}LysIleTrpSerPheArgTyrAlaThrAspValV 1037948 : .................ag{t}aaaatatgGAGTTTTAGGTACGCAACGGACGTGG : 1036184 241 : hrAspAlaThrGlnTyrValValTrpPheThrIleLeuTyrSerSerIleAspLeu : 258 .! !.!!! !!:!!:!:!!||| ! !|||:!!:!! !!!!!!:!:! ! ! alThrThrIleArgPheLeuValLeuSerThrValIleThrCysThrValAlaCys 1036183 : TTACCACAATTCGATTTCTGGTTCTGAGTACGGTAATCACATGCACTGTGGCGTGT : 1036130 259 : ValLeuCysGlyLeuAsnIleIleGly >>>> Target Intron 3 >>>> : 268 |||!!!..!|||:!!|||:!:|||||| 73 bp ValPheAlaGlyIleAsnLeuIleGly++ ++ 1036129 : GTATTTGCTGGAATTAATTTGATCGGAgt.........................ag : 1036029 269 : ArgGlnProValValValLysLeuGlnPheIleThrLeuSerTrpThrAlaMetMe : 286 !:!||||||:!!!.!||||||:!!||||||:!!|||:!!||| ! ||||||:!!:! LysGlnProLeuAlaValLysValGlnPheLeuThrMetSerGlyThrAlaLeuLe 1036028 : AAACAACCGTTGGCTGTTAAAGTTCAATTTCTTACTATGAGTGGAACCGCGTTGCT : 1035973 287 : tGluValPheMetCysAlaLeuProAlaAspThrLeuIleAsnMet : 301 !|||||||||||||||:!!|||||||||||| !||||||:!!||| uGluValPheMetCysSerLeuProAlaAspHisLeuIleAspMet 1035972 : GGAAGTGTTTATGTGTTCACTACCAGCTGACCATTTGATAGATATG : 1035926 vulgar: Lalb_14671 0 301 . KQ414618.1 1039184 1035925 - 564 M 94 282 S 0 1 5 0 2 I 0 546 3 0 2 S 1 2 M 132 396 S 0 2 5 0 2 I 0 1729 3 0 2 S 1 1 M 39 117 5 0 2 I 0 69 3 0 2 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1035926 1039184 564 - . gene_id 3 ; sequence Lalb_14671 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1038902 1039184 . - . KQ414618.1 exonerate:protein2genome:local exon 1038902 1039184 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1038900 1038901 . - . intron_id 1 ; splice_site "AT" KQ414618.1 exonerate:protein2genome:local intron 1038352 1038901 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1038352 1038353 . - . intron_id 0 ; splice_site "TG" KQ414618.1 exonerate:protein2genome:local cds 1037952 1038351 . - . KQ414618.1 exonerate:protein2genome:local exon 1037952 1038351 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1037950 1037951 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1036219 1037951 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1036219 1036220 . - . intron_id 1 ; splice_site "ag" KQ414618.1 exonerate:protein2genome:local cds 1036101 1036218 . - . KQ414618.1 exonerate:protein2genome:local exon 1036101 1036218 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1036099 1036100 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1036028 1036100 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1036028 1036029 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1035926 1036027 . - . KQ414618.1 exonerate:protein2genome:local exon 1035926 1036027 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1035926 1039184 564 - . alignment_id 3 ; Query Lalb_14671 ; Align 1039185 1 282 ; Align 1038350 96 396 ; Align 1036218 229 117 ; Align 1036028 268 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14671 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 250 Query range: 70 -> 234 Target range: 1058224 -> 1057732 71 : SerLysAlaValIleMetAlaIleAlaCysAlaHisValLeuThrGlnIleValVa : 89 .!!|||:!!..!:!:!!::!!|||! ! !! ::: ||| :! GlyLysSerThrValIleSerIleGluThrPheLeuLeuAsnIleLeuIleGluLe 1058224 : GGTAAGTCGACCGTGATTTCGATAGAAACATTTCtgttaaacattttaattgaacT : 1058170 90 : lSerSerIleGlnHisAspArgTrpGlnArgLeuIleGluHisMetThrAlaSerL : 108 !||| !!:!::!!:!!:!! !! !||| !||| ! !!||| ! !! !! uSerProValLysAsnAsnAlaSerGlnValLeuTyrPheAspMetGluAsnPheC 1058169 : GTCACCGGTGAAAAACAATGCTTCGCAGGTATTGTACTTCGACATGGAGAATTTCT : 1058113 109 : euLysAsnAlaLysSerTyrGluArgAsnValTyrGlnArgTyrValAspSerTyr : 126 !!:! !!|||! ||| |||::: ||| |||||||||||||||!!!||| ysArgTyrAlaThrSerLysGluLysValValLeuGlnArgTyrValAspArgTyr 1058112 : GCAGATACGCCACCtcgaaggaaaaagttgtcCTGCAACGATACGTGGACAGATAC : 1058059 127 : CysArgPheTyrAlaLeuThrValMetTrpPheTyrMetSerProIleValPheVa : 145 !|||:!!!.!:!! !:!!:!:|||! !!:!:!:!!! !!||| !! !!:! LysTyrPheHisGlyIleTyrIleLeuTrpCysPheLeuThrThrIlePheValIl 1058058 : AAATACTTTCATGGGATTTATATATTATGGTGCTTCCTCACGACCATCTTCGTCAT : 1058002 146 : lValGlyThrIlePheLeuProGlnProPheProAlaIleSerGluTyrProPheA : 164 ! !||| !!:!:!:!! !|||||| !!||||||.!! !:!! !|||||||||! eSerGlyProLeuTyrSerProGlnThrPheProThrHisAlaIleTyrProPheG 1058001 : AAGTGGTCCATTGTACTCACCACAGACGTTCCCCACTCATGCGATATATCCTTTCC : 1057945 165 : rgValAsnTyrGluProValLysThrIleIleIleLeuHisGlnAlaLeuValGly : 182 :!|||.!.:!! !! ! !!||| :::||| ...||||||:!!||||||||| lnValGluHisThrLeuPheLysIleValIleTyrPheHisGlnSerLeuValGly 1057944 : AAGTGGAACATACACTGTTCAagattgttatttatttccatCAGTCGTTAGTTGGT : 1057891 183 : PheGlnCysSerAlaSerValSerMetAsnMetPheAlaAlaLeuLeuLeuLeuTy : 201 ||||||...||||||.!!:!!:!!!!::!!! !||||||||||||! !|| PheGlnAlaSerAlaGlyMetAlaIleAspThrGlnIleAlaLeuLeuLeuArgTy 1057890 : TTTCAGGCGTCCGCTGGTATGGCCATCGACACTCAAATTGCTCTTCTTCTGCGATA : 1057834 202 : rValAlaAlaArgTyrGluIleLeuMetIleAspLeuArgGluSerThrSerIleA : 220 |!.!|||||||||!:!|||:!!||| ! !!!::!!|||.!.:!!!.!!!! ! rAlaAlaAlaArgPheGluLeuLeuGlyAsnGluMetArgAsnAlaAsnThrHisC 1057833 : CGCGGCTGCCAGGTTCGAGCTATTGGGAAACGAGATGCGAAATGCAAATACTCACT : 1057777 221 : spAlaLeuThrMetCysValLysGluTyrTyrSerValThrArg : 234 !! !!!!!.! |||:!!:!!:!!:!! !..!:!! !||| ysGluPheAsnAlaCysIleGluLysHisSerGluLeuLeuArg 1057776 : GTGAATTCAATGCCTGCATAGAGAAGCACAGTGAACTTCTCAGg : 1057733 vulgar: Lalb_14671 70 234 . KQ414618.1 1058224 1057732 - 250 M 164 492 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057733 1058224 250 - . gene_id 4 ; sequence Lalb_14671 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1057733 1058224 . - . KQ414618.1 exonerate:protein2genome:local exon 1057733 1058224 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057733 1058224 250 - . alignment_id 4 ; Query Lalb_14671 ; Align 1058225 71 492 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14669 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 753 Query range: 5 -> 354 Target range: 1039169 -> 1035607 6 : ThrProGluLysAlaIleThrPheValArgLeuSerIleAlaLeuIleCysGlyTr : 24 !:!||||||!:!||||||:!!.!!|||!:!:!!! !! !|||!!!! !||| !!|| SerProGluArgAlaIleSerLeuValGlnValIleThrAlaPheThrCysCysTr 1039169 : AGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGCTTTTACCTGCTGTTG : 1039115 25 : pProGlnProSerValSerThrLysAlaGlnValLeuCysSerArgIleSerLysV : 43 ||||! ||||||..!:!!||||||:!!! !|||||| ! !!:!||| !!:! pProLeuProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuArgS 1039114 : GCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGAGAT : 1039058 44 : alLeuAlaIleIleSerAlaLeuAlaLeuPheLeuProValLeuSerAlaThrIle : 61 !!!! !:!!:!!!:!||||||!.!||||||||||||:!!|||! !||| ! ! erPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHis 1039057 : CTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCAC : 1039004 62 : LeuHisSerGlyAspAlaAsnValPheSerLysAlaAlaPheMetAlaIleAlaTh : 80 :!!||| !!..!||||||.!. ! !!:!!|||||||||! !:!!.!!:!!||| ValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLe 1039003 : GTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCTct : 1038947 81 : rGlyGlnValPheIleTyrAlaLeuLeuThrAlaIleGlnHisAspArgPheGln : 99 |||:::|||... ......::: ! ! !|||:!!|||!.!|||||| uValGlnIlePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGln+ 1038946 : cgtgcaaatatttttccaaactttcgttTGCATCGGTCAATACGATCATTTTCAGg : 1038890 100 : >>>> Target Intron 1 >>>> ArgLeuValGluAsnIleThrValSerI : 108 550 bp !:!|||:!!|||.!.!!:! !:!!!!! + ++LysLeuIleGluGluMetLysIleCysC 1038889 : t.........................agAAACTAATCGAAGAAATGAAGATTTGTT : 1038313 109 : leLysAspAlaLysSerTyrGluArgAsnValTyrGlnArgTyrValAspThrTyr : 126 !:!! |||||| !!|||||||||:!!|||!:!||||||||||||:!!! !:!: ysGluThrAlaLysProTyrGluArgAspValPheGlnArgTyrValAsnLysHis 1038312 : GTGAAACAGCAAAACCATACGAAAGAGACGTCTTCCAACGATACGTCAATAAGCAc : 1038259 127 : TyrLysPheTyrGlyLeuThrValMetTrpTyrTyrMetSerAlaMetIleValIl : 145 |||||| ! ! |||!:!|||:!:!!!|||!!:|||:!!:! SerLeuPheTyrIleThrCysSerSerTrpPheTyrLeuThrAlaIleIleMetVa 1038258 : tctttattttatataacatGTTCGTCATGGTTTTACTTAACAGCAATAATTATGGT : 1038202 146 : eValGlyThrIlePheLeuProGlnProPheProThrIleSerGluTyrProPheA : 164 !:!!|||!:!:!:.!!:!! !!.!.||||||||||||! !:!!! !||||||||| lLeuGlySerLeuLeuIleSerAspProPheProThrAsnAlaValTyrProPheP 1038201 : TCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACCAACGCAGTATATCCATTCC : 1038145 165 : spValAspTyrGluProValArgIleMetIlePheIleHisGlnAlaIleValGly : 182 !|||:!!!:!||||||:!!|||! !!!:||||||!!:||||||:!!.!!|||||| roValAsnPheGluProLeuArgSerIleIlePheMetHisGlnSerPheValGly 1038144 : CTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCACCAATCGTTCGTTGGC : 1038091 183 : PheGlnCysSerAlaSerValSerLeuAsnMetPheAlaAlaLeuLeuIleLeuAs : 201 .!.||||||:!!||| !!.!|||:!!|||:!!.!!:!!|||||||||:!:||| IleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeuLeuLeuLeuPh 1038090 : ATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTGTTATTGCTATT : 1038034 202 : nAlaAlaAlaArgTyrGluMetLeuMetIleAspLeuLysGluAlaAsnSerValA : 220 !.!!.!!||||||:::|||:::||||||! !!:|||!:!.!.!.!|||..!:!!! eThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAspIleG 1038033 : CACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGATATCG : 1037977 221 : spAlaLeuIleValCysValLysLysTyrHisAlaValThr{Ar} >>>> Targ : 234 !:.!!|||||| ! !!:!!||||||||| .!!||| !{||} luThrLeuIleLysSerMetLysLysTyrSerThrValArg{Ar}++ 1037976 : AAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGG{AG}gt......... : 1037931 235 : et Intron 2 >>>> {g}PheAlaLysAspValIleAsnGlyAlaGlnTyrIl : 246 1733 bp {|}!:!|||! !||||||:!!!.! ! !!:!!:!:! ++{g}TyrAlaThrAspValValThrThrIleArgPheLe 1037930 : ................ag{G}TACGCAACGGACGTGGTTACCACAATTCGATTTCT : 1036166 247 : eAlaValGlyThrValLeuLeuSerSerMetLysIleValLeuCysGlyLeuAsnI : 265 :!.!:!!.!!||||||:!! !!!!!!!:!! ! !|||!!!..!|||:!!|||: uValLeuSerThrValIleThrCysThrValAlaCysValPheAlaGlyIleAsnL 1036165 : GGTTCTGAGTACGGTAATCACATGCACTGTGGCGTGTGTATTTGCTGGAATTAATT : 1036109 266 : leIleGly >>>> Target Intron 3 >>>> ArgThrSerIleValIleL : 274 !:|||||| 73 bp !:! ! !!:!:!.!:!!| euIleGly++ ++LysGlnProLeuAlaValL 1036108 : TGATCGGAgt.........................agAAACAACCGTTGGCTGTTA : 1036009 275 : ysLeuGlnPheMetAlaLeuSerTrpThrAlaLeuMetGluValPheMetCysAla : 292 ||:!!||||||:!:.!!:!!||| ! |||||||||:!!|||||||||||||||:!! ysValGlnPheLeuThrMetSerGlyThrAlaLeuLeuGluValPheMetCysSer 1036008 : AAGTTCAATTTCTTACTATGAGTGGAACCGCGTTGCTGGAAGTGTTTATGTGTTCA : 1035955 293 : LeuProAlaAspAlaLeuIleAsnVal >>>> Target Intron 4 >>>> : 302 |||||||||||| !||||||:!!:!! 159 bp LeuProAlaAspHisLeuIleAspMet++ ++ 1035954 : CTACCAGCTGACCATTTGATAGATATGgt.........................ag : 1035768 303 : SerThrAsnAlaValArgSerValTyrGluSerThrTrpTyrAspGlnValLeuSe : 320 ||| !||| !:!!!:!.!!:!!|||||||||! !||||||!!:!:! |||.. SerGluAsnIleMetGlnGlyIleTyrGluSerLysTrpTyrGluArgSerLeuLy 1035767 : AGCGAGAACATAATGCAAGGAATATATGAATCGAAATGGTACGAACGAtctctaaa : 1035712 321 : rValGlnLysThrValLeuHisIleLeuValProGlnGluProMetAlaIleSerV : 339 .:::||||||::!..!:!!! !!!:|||..!||||||...|||:!!.!!:!!!.!: sIleGlnLysSerThrValLeuMetLeuThrProGlnSerProValThrValLysI 1035711 : aattcaaaagtcTACAGTCCTCATGTTGACTCCTCAATCTCCGGTGACAGTAAAAA : 1035655 340 : alLysValPheIleProAlaLeuSerLeuGluTyrTyrCysSerVal : 354 !!||| !.!!||||||!..|||||||||...:::|||||||||||| leLysCysLeuIleProValLeuSerLeuAsnPheTyrCysSerVal 1035654 : TCAAGTGCCTCATTCCAGttctttctttgaatttttactgCTCGGTA : 1035608 vulgar: Lalb_14669 5 354 . KQ414618.1 1039169 1035607 - 753 M 93 279 5 0 2 I 0 546 3 0 2 M 135 405 S 0 2 5 0 2 I 0 1729 3 0 2 S 1 1 M 33 99 5 0 2 I 0 69 3 0 2 M 34 102 5 0 2 I 0 155 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1035608 1039169 753 - . gene_id 1 ; sequence Lalb_14669 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1038891 1039169 . - . KQ414618.1 exonerate:protein2genome:local exon 1038891 1039169 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1038889 1038890 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1038341 1038890 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1038341 1038342 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1037934 1038340 . - . KQ414618.1 exonerate:protein2genome:local exon 1037934 1038340 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1037932 1037933 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1036201 1037933 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1036201 1036202 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1036101 1036200 . - . KQ414618.1 exonerate:protein2genome:local exon 1036101 1036200 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1036099 1036100 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1036028 1036100 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1036028 1036029 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1035926 1036027 . - . KQ414618.1 exonerate:protein2genome:local exon 1035926 1036027 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1035924 1035925 . - . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1035767 1035925 . - . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 1035767 1035768 . - . intron_id 3 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1035608 1035766 . - . KQ414618.1 exonerate:protein2genome:local exon 1035608 1035766 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1035608 1039169 753 - . alignment_id 1 ; Query Lalb_14669 ; Align 1039170 6 279 ; Align 1038341 99 405 ; Align 1036200 235 99 ; Align 1036028 268 102 ; Align 1035767 302 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14669 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 753 Query range: 5 -> 354 Target range: 1030002 -> 1028045 6 : ThrProGluLysAlaIleThrPheValArgLeuSerIleAlaLeuIleCysGlyTr : 24 !:!||||||!:!||||||:!!.!!|||!:!:!!! !! !|||!!!! !||| !!|| SerProGluArgAlaIleSerLeuValGlnValIleThrAlaPheThrCysCysTr 1030002 : AGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGCTTTTACCTGCTGTTG : 1029948 25 : pProGlnProSerValSerThrLysAlaGlnValLeuCysSerArgIleSerLysV : 43 ||||! ||||||..!:!!||||||:!!! !|||||| ! !!:!||| !!:! pProLeuProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuArgS 1029947 : GCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGAGAT : 1029891 44 : alLeuAlaIleIleSerAlaLeuAlaLeuPheLeuProValLeuSerAlaThrIle : 61 !!!! !:!!:!!!:!||||||!.!||||||||||||:!!|||! !||| ! ! erPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHis 1029890 : CTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCAC : 1029837 62 : LeuHisSerGlyAspAlaAsnValPheSerLysAlaAlaPheMetAlaIleAlaTh : 80 :!!||| !!..!||||||.!. ! !!:!!|||||||||! !:!!.!!:!!||| ValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLe 1029836 : GTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCct : 1029780 81 : rGlyGlnValPheIleTyrAlaLeuLeuThrAlaIleGlnHisAspArgPheGln : 99 |||:::|||... ..!!!!:!! ! ! !|||:!!|||!.!|||||| uValGlnIlePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGln+ 1029779 : cgtgcaaatatttttccagacTTTCGTTTGCATCGGCCAATACGATCATTTTCAGg : 1029723 100 : >>>> Target Intron 1 >>>> ArgLeuValGluAsnIleThrValSerI : 108 550 bp !:!|||:!!|||.!.!!:! !:!!!!! + ++LysLeuIleGluGluMetLysIleCysC 1029722 : t.........................agAAACTAATCGAAGAAATGAAGATTTGCT : 1029146 109 : leLysAspAlaLysSerTyrGluArgAsnValTyrGlnArgTyrValAspThrTyr : 126 !:!! |||||| !!|||||||||:!!|||!:!|||||||||||||||! !||| ysGluThrAlaLysProTyrGluArgAspValPheGlnArgTyrValAspLysTyr 1029145 : GTGAAACAGCGAAACCATACGAAAGAGACGTCTTTCAACGATACGTCGATAAATAC : 1029092 127 : TyrLysPheTyrGlyLeuThrValMetTrpTyrTyrMetSerAlaMetIleValIl : 145 ! ! !||||||! ! ! ! ! !|||!:!|||:!:!!!|||:!:|||:!!:! SerLeuPheTyrValThrCysSerSerTrpPheTyrLeuThrAlaValIleMetVa 1029091 : TCTTTATTTTACGTAACATGTTCGTCGTGGTTTTACTTAACAGCAGTTATTATGGT : 1029035 146 : eValGlyThrIlePheLeuProGlnProPheProThrIleSerGluTyrProPheA : 164 !:!!|||!:! .!!:!! !!.!.||||||||||||! !:!!! !||||||||| lLeuGlySerArgIleIleSerAspProPheProThrAsnAlaValTyrProPheP 1029034 : TCTGGGAAGTCGGATTATATCTGATCCTTTTCCAACCAACGCCGTATATCCATTCC : 1028978 165 : spValAspTyrGluProValArgIleMetIlePheIleHisGlnAlaIleValGly : 182 !|||:!!!:!||||||:!!|||! !!!:||||||!!:||||||:!!.!!|||||| roValAsnPheGluProLeuArgSerIleIlePheMetHisGlnSerPheValGly 1028977 : CTGTTAACTTTGAACCCTTGAGAAGTATCATTTTTATGCACCAATCGTTCGTTGGC : 1028924 183 : PheGlnCysSerAlaSerValSerLeuAsnMetPheAlaAlaLeuLeuIleLeuAs : 201 .!.||||||:!!||| !..!|||:!!|||:!!.!..!!|||||||||:!!||| IleGlnCysAlaAlaHisThrSerMetAsnValLeuThrAlaLeuLeuLeuLeuPh 1028923 : ATACAGTGTGCTGCACACACTAGTATGAATGTGCTAACTGCATTGTTATTACTATT : 1028867 202 : nAlaAlaAlaArgTyrGluMetLeuMetIleAspLeuLysGluAlaAsnSerValA : 220 !||||||||||||!:!|||!!:||||||!!:!!:|||!:!.!.!.!!:!..!:!!! eAlaAlaAlaArgPheGluIleLeuMetMetGluLeuArgAsnValSerAspIleG 1028866 : TGCTGCAGCTCGTTTCGAGATACTGATGATGGAGCTGAGGAATGTCAGTGACATTG : 1028810 221 : spAlaLeuIleValCysValLysLysTyrHisAlaValThr{Ar} >>>> Targ : 234 !:.!!|||||| !|||:!!||||||||| !||| !{||} luThrLeuIleLysCysMetLysLysTyrSerIleValArg{Ar}++ 1028809 : AAACACTGATTAAATGTATGAAAAAGTATTCGATCGTACGG{AG}gt......... : 1028764 235 : et Intron 2 >>>> {g}PheAlaLysAspValIleAsnGlyAlaGlnTyrIl : 246 205 bp {|}!:!|||! !||||||:!!!.! ! !!:! !:! ++{g}TyrAlaThrAspValValThrThrIleArgLeuLe 1028763 : ................ag{G}TACGCAACGGACGTGGTTACCACAATTCGACTTCT : 1028527 247 : eAlaValGlyThrValLeuLeuSerSerMetLysIleValLeuCysGlyLeuAsnI : 265 :!.!:!! !||||||:!! !!!!!!!:!! ! !|||!!!..!|||:!!|||: uValLeuIleThrValIleThrCysThrValAlaCysValPheAlaGlyIleAsnL 1028526 : GGTTCTGATTACGGTAATCACATGCACTGTGGCGTGTGTATTTGCTGGAATTAACT : 1028470 266 : leIleGly >>>> Target Intron 3 >>>> ArgThrSerIleValIleL : 274 !:|||||| 73 bp !:! ! !!.!!!.!:!:| euIleGly++ ++LysGlnProPheAlaValL 1028469 : TGATCGGAgt.........................agAAACAACCGTTCGCTGTGA : 1028370 275 : ysLeuGlnPheMetAlaLeuSerTrpThrAlaLeuMetGluValPheMetCysAla : 292 || !||||||:!:.!!:!!||| ! |||||||||:!!||||||.!!||||||:!! ysAlaGlnPheLeuThrValSerGlyThrAlaLeuLeuGluValLeuMetCysSer 1028369 : AAGCTCAGTTTCTTACTGTGAGTGGAACCGCTTTGCTGGAAGTGCTTATGTGTTCA : 1028316 293 : LeuProAlaAspAlaLeuIleAsnVal >>>> Target Intron 4 >>>> : 302 |||||||||||| !||||||:!!:!! 82 bp LeuProAlaAspHisLeuIleAspMet++ ++ 1028315 : CTACCAGCTGACCATTTGATAGATATGgt.........................ag : 1028206 303 : SerThrAsnAlaValArgSerValTyrGluSerThrTrpTyrAspGlnValLeuSe : 320 ||| !||| !:!!!:!.!!:!!|||||||||! !||||||!!:!:! |||.. SerGluAsnIleMetGlnGlyIleTyrGluSerLysTrpTyrGluArgSerLeuLy 1028205 : AGCGAGAACATAATGCAAGGAATATATGAATCAAAATGGTACGAACGAtctctaaa : 1028150 321 : rValGlnLysThrValLeuHisIleLeuValProGlnGluProMetAlaIleSerV : 339 .:::||||||::!..!:!!! !!!:|||..!||||||...|||:!!.!!:!!!.!: sIleGlnLysSerThrValLeuMetLeuThrProGlnSerProValThrValLysI 1028149 : aattcaaaagtcTACAGTCCTCATGTTGACTCCTCAATCTCCGGTGACAGTAAAAA : 1028093 340 : alLysValPheIleProAlaLeuSerLeuGluTyrTyrCysSerVal : 354 !!||| !.!!||||||!..|||||||||...:::|||||||||||| leLysCysLeuIleProValLeuSerLeuAsnPheTyrCysSerVal 1028092 : TCAAGTGCCTCATTCCAGttctttctttgaatttttactgCTCGGTA : 1028046 vulgar: Lalb_14669 5 354 . KQ414618.1 1030002 1028045 - 753 M 93 279 5 0 2 I 0 546 3 0 2 M 135 405 S 0 2 5 0 2 I 0 201 3 0 2 S 1 1 M 33 99 5 0 2 I 0 69 3 0 2 M 34 102 5 0 2 I 0 78 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028046 1030002 753 - . gene_id 2 ; sequence Lalb_14669 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1029724 1030002 . - . KQ414618.1 exonerate:protein2genome:local exon 1029724 1030002 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1029722 1029723 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1029174 1029723 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1029174 1029175 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028767 1029173 . - . KQ414618.1 exonerate:protein2genome:local exon 1028767 1029173 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1028765 1028766 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1028562 1028766 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1028562 1028563 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028462 1028561 . - . KQ414618.1 exonerate:protein2genome:local exon 1028462 1028561 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1028460 1028461 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1028389 1028461 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1028389 1028390 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028287 1028388 . - . KQ414618.1 exonerate:protein2genome:local exon 1028287 1028388 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1028285 1028286 . - . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1028205 1028286 . - . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 1028205 1028206 . - . intron_id 3 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028046 1028204 . - . KQ414618.1 exonerate:protein2genome:local exon 1028046 1028204 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028046 1030002 753 - . alignment_id 2 ; Query Lalb_14669 ; Align 1030003 6 279 ; Align 1029174 99 405 ; Align 1028561 235 99 ; Align 1028389 268 102 ; Align 1028205 302 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14669 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 410 Query range: 0 -> 234 Target range: 1058517 -> 1057732 1 : MetPheGlyThrValThrProGluLysAlaIleThrPheValArgLeuSerIleAl : 19 ||| !!:!:!!|||||||||:!!||||||:!!|||..!!:!||||||:!!|| MetArgLysSerIleThrProGluGlnAlaIleSerPheThrLysLeuSerValAl 1058517 : ATGAGGAAAAGTATAACGCCGGAACAAGCGATCTCGTTCACGAAACTGAGCGTCGC : 1058463 20 : aLeuIleCysGlyTrpProGlnProSerValSerThrLysAlaGlnValLeuCysS : 38 |:!!! !|||..!||||||! ! !! !!:!!:!!|||!:!.!!||||||||| !! aValThrCysSerTrpProProSerProLeuAlaThrArgThrGlnValLeuLeuP 1058462 : TGTAACTTGTTCGTGGCCACCGTCACCTCTGGCGACCAGAACTCAAGTTTTGCTCT : 1058406 39 : erArgIleSerLysValLeuAlaIleIleSerAlaLeuAlaLeuPheLeuProVal : 56 !!.!! ! ! ! ! !|||.!!:!!|||.!!:!!||||||.!!||||||:!! heAsnThrLeuTrpSerThrAlaPheValSerThrIleAlaLeuLeuLeuProLeu 1058405 : TTAATACGTTGTGGAGCACAGCATTCGTTAGCACCATCGCGCTGCTTTTGCCGCTA : 1058352 57 : LeuSerAlaThrIleLeuHisSerGlyAspAlaAsnValPheSerLysAlaAlaPh : 75 ||||||!.!! ! ! !:!! !! !||| !!! !:!!.!!.!!|||.!!!.! LeuSerGlyIleTyrGluTyrArgLysAspProIleIleLeuGlyLysThrValSe 1058351 : TTGAGCGGAATTTACGAGTACCGTAAAGACCCCATCATTCTTGGGAAAACAGTCAG : 1058295 76 : eMetAlaIleAlaThrGlyGlnValPheIleTyrAlaLeuLeuThrAlaIleGlnH : 94 !:!:||| |||..!!.!|||||| ||| ! !:!!:!! ! !.!!|||! rLeuAlaSerAlaValAlaGlnValAlaIleLysMetIleMetCysArgPheGlnG 1058294 : CCTCGCCTCGGCTGTCGCCCAGGTGGCAATCAAAATGATAATGTGCCGTTTCCAGC : 1058238 95 : isAspArgPheGln >>>> Target Intron 1 >>>> ArgLeuValGluA : 103 !. ! !:!|||||| 83 bp !||| ! : lnLysGlnPheGln++ ++ValLeuTyrPheA 1058237 : AGAAGCAATTCCAGgt.........................agGTATTGTACTTCG : 1058128 104 : snIleThrValSerIleLysAspAlaLysSerTyrGluArgAsnValTyrGlnArg : 121 !!!!: ! !! ! !!:! !!|||! ||| |||::: ||| |||||| spMetGluAsnPheCysArgTyrAlaThrSerLysGluLysValValLeuGlnArg 1058127 : ACATGGAGAATTTCTGCAGATACGCCACCtcgaaggaaaaagttgtcCTGCAACGA : 1058074 122 : TyrValAspThrTyrTyrLysPheTyrGlyLeuThrValMetTrpTyrTyrMetSe : 140 |||||||||! !||| ! ! |||:!!|||:!! !:!!:!:|||! !!:!:!:!! TyrValAspArgTyrLysTyrPheHisGlyIleTyrIleLeuTrpCysPheLeuTh 1058073 : TACGTGGACAGATACAAATACTTTCATGGGATTTATATATTATGGTGCTTCCTCAC : 1058017 141 : rAlaMetIleValIleValGlyThrIlePheLeuProGlnProPheProThrIleS : 159 !.!!!!:.!!|||||| !||| !!:!:!:!! !|||||| !!||||||||| !: rThrIlePheValIleSerGlyProLeuTyrSerProGlnThrPheProThrHisA 1058016 : GACCATCTTCGTCATAAGTGGTCCATTGTACTCACCACAGACGTTCCCCACTCATG : 1057960 160 : erGluTyrProPheAspValAspTyrGluProValArgIleMetIlePheIleHis : 177 !! !|||||||||.!.|||!!::!! !! ! !!!::|||:::|||:::...||| laIleTyrProPheGlnValGluHisThrLeuPheLysIleValIleTyrPheHis 1057959 : CGATATATCCTTTCCAAGTGGAACATACACTGTTCAagattgttatttatttccat : 1057906 178 : GlnAlaIleValGlyPheGlnCysSerAlaSerValSerLeuAsnMetPheAlaAl : 196 |||:!!:!!||||||||||||...||||||.!!:!!:!!:!!:!!! !|| GlnSerLeuValGlyPheGlnAlaSerAlaGlyMetAlaIleAspThrGlnIleAl 1057905 : CAGTCGTTAGTTGGTTTTCAGGCGTCCGCTGGTATGGCCATCGACACTCAAATTGC : 1057849 197 : aLeuLeuIleLeuAsnAlaAlaAlaArgTyrGluMetLeuMetIleAspLeuLysG : 215 |||||||:!:! ! !!||||||||||||!:!|||:!:||| ! !!!::!!::!. aLeuLeuLeuArgTyrAlaAlaAlaArgPheGluLeuLeuGlyAsnGluMetArgA 1057848 : TCTTCTTCTGCGATACGCGGCTGCCAGGTTCGAGCTATTGGGAAACGAGATGCGAA : 1057792 216 : luAlaAsnSerValAspAlaLeuIleValCysValLysLysTyrHisAlaValThr : 233 !.||||||!!! ! !! !!!!! !!.!|||:!!:!!|||:!! !! !:!! ! snAlaAsnThrHisCysGluPheAsnAlaCysIleGluLysHisSerGluLeuLeu 1057791 : ATGCAAATACTCACTGTGAATTCAATGCCTGCATAGAGAAGCACAGTGAACTTCTC : 1057738 234 : Arg : 234 ||| Arg 1057737 : AGg : 1057733 vulgar: Lalb_14669 0 234 . KQ414618.1 1058517 1057732 - 410 M 98 294 5 0 2 I 0 79 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057733 1058517 410 - . gene_id 3 ; sequence Lalb_14669 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1058224 1058517 . - . KQ414618.1 exonerate:protein2genome:local exon 1058224 1058517 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1058222 1058223 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1058141 1058223 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1058141 1058142 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1057733 1058140 . - . KQ414618.1 exonerate:protein2genome:local exon 1057733 1058140 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057733 1058517 410 - . alignment_id 3 ; Query Lalb_14669 ; Align 1058518 1 294 ; Align 1058141 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14669 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 388 Query range: 0 -> 228 Target range: 1053857 -> 1052560 1 : MetPheGlyThrValThrProGluLysAlaIleThrPheValArgLeuSerIleAl : 19 |||!!. ! !:!!||||||||||||!.!||| !.!!:!! !!!!!|||:!:|| MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : aLeuIleCysGlyTrpProGlnProSerValSerThrLysAlaGlnValLeuCysS : 38 |||| ! ! !!||||||! !!||| !:!!!:!||||||||||||:::... aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 39 : erArgIleSerLysValLeuAlaIleIleSerAlaLeuAlaLeuPheLeuProVal : 56 :::||| :::::: ::! |||||||||||| !|||.!!||||||:!! heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 57 : LeuSerAlaThrIleLeuHisSerGlyAspAlaAsnValPheSerLysAlaAlaPh : 75 |||! !:!!||| !||||||! !! !|||!.!! !|||.!!|||:!!::! !! LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 76 : eMetAlaIleAlaThrGlyGlnValPheIleTyrAlaLeuLeuThrAlaIle{Gl} : 93 !:!!:!!!!:!.!..! !|||:!!.!!!!: ! .!!:!!:!! ! !! !{.!} sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCysPheThr{As} 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGTTTCACC{AA} : 1053581 94 : >>>> Target Intron 1 >>>> {n}HisAspArgPheGlnArgLeuVal : 101 613 bp {.}:!!! ! !!!.||||||:!!:!! -+ +-{n}TyrGlySerLeuGlnArgIleIle 1053580 : ct.........................ac{T}TATGGTTCTTTACAGCGAATAATT : 1052944 102 : GluAsnIleThrValSerIleLysAspAlaLysSerTyrGluArgAsnValTyrGl : 120 !.!.!!:! !..!! !:!!|||!!:|||:!!..!!:!||||||.!.:!! !!! ThrGluMetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLeuHi 1052943 : ACAGAAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCTCCA : 1052887 121 : nArgTyrValAspThrTyrTyrLysPheTyrGlyLeuThrValMetTrpTyrTyrM : 139 .!.!|||:!!.!.! !! ! ! ||||||||| !:!!:!!!!:||| |||: sAsnTyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrTyrL 1052886 : CAACTATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACATACC : 1052830 140 : etSerAlaMetIleValIleValGlyThrIlePheLeuProGlnProPheProThr : 157 !:!!!|||! ! !!:!!:!!||| !!:!! !!||||||.!.|||||||||!:! euCysAlaThrCysPheValLeuGlyProValValLeuProAsnProPheProSer 1052829 : TCTGTGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCAGC : 1052776 158 : IleSerGluTyrProPheAspValAspTyrGluProValArgIleMetIlePheIl : 176 ! !:!!|||||||||||| !|||:!! ! !|||:!!!.! !!!::!!!:!:! SerAlaGluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyrLe 1052775 : AGTGCAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTACCT : 1052719 177 : eHisGlnAlaIleValGlyPheGlnCysSerAlaSerValSerLeuAsnMetPheA : 195 :||||||:!!.!!:!!.!!||||||! !|||||| !:!!!!!:!!!:!!!:|||! uHisGlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePheG 1052718 : GCACCAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTTCG : 1052662 196 : laAlaLeuLeuIleLeuAsnAlaAlaAlaArgTyrGluMetLeuMetIleAspLeu : 213 .!|||||||||:!!! !! !.!!|||||||||!:!.!. |||! :!:!!::!! lyAlaLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluVal 1052661 : GAGCTCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGGTT : 1052608 214 : LysGluAlaAsnSerValAspAlaLeuIleValCysValLysLys : 228 :!!:!!::!:::|||:!! !! !||||||:!!|||||||||||| GlnGlnSerSerSerIleHisMetLeuIleIleCysValLysLys 1052607 : CAACAAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAA : 1052561 vulgar: Lalb_14669 0 228 . KQ414618.1 1053857 1052560 - 388 M 92 276 S 0 2 5 0 2 I 0 609 3 0 2 S 1 1 M 135 405 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1052561 1053857 388 - . gene_id 4 ; sequence Lalb_14669 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1053580 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053580 1053857 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1053578 1053579 . - . intron_id 1 ; splice_site "CT" KQ414618.1 exonerate:protein2genome:local intron 1052967 1053579 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052967 1052968 . - . intron_id 0 ; splice_site "AC" KQ414618.1 exonerate:protein2genome:local cds 1052561 1052966 . - . KQ414618.1 exonerate:protein2genome:local exon 1052561 1052966 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1052561 1053857 388 - . alignment_id 4 ; Query Lalb_14669 ; Align 1053858 1 276 ; Align 1052966 94 405 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14664 [mRNA] [translate_table: standard] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 554 Query range: 0 -> 287 Target range: 3157375 -> 3158668 1 : ProAspSerTrpThrSerProSerLysArgIleLeuTyrSerThrTyrSerAlaPh : 19 ||| !!|||||||||!!!|||! !:!!||| !||||||!:!! !|||.!!!..|| ProHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPh 3157376 : CCCCATTCGTGGACAACACCGTTCGAAAGGTCTTTGTACAATATCTACGGGGtgtt : 3157430 20 : eIleTrpPheValMetTyrTrpTrpThrValSerGlnIleLeuAspLeuIleIleG : 38 | :::...:::::: ! ! ..!:!!|||||||||||||||:!! |||. eSerPheLeuLeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIleA 3157431 : ctcctttcttcttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCA : 3157487 39 : lnValLysThrGlnAspGluPheThrAspIlePheTyrAlaThrMetAlaAsnCys : 56 !.|||:!!!:!||||||!!:|||!::||| ||| ...||| !.! ! ! snValGluSerGlnAspAspPheSerAspAsnPheSerValThrAlaValValPhe 3157488 : ACGTGGAGAGCCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTT : 3157541 57 : CysIleCysAlaLysPheThrAsnValLeuLeuThrArgThrTyrIleAlaAsnMe : 75 !! !! !|||.!!:!!! !:!!|||:!! !||| ! !!.!! ! !:! LeuThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLe 3157542 : CTCACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCT : 3157598 76 : tIleAspArgIleGluLysGluProPheAlaSerLeuAsnValGluGluGluGluI : 94 !||||||! !:!!:!!!!.:!!||||||:!! !!:!!:!!..!||||||.!.|||| uIleAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluI 3157599 : GATCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGA : 3157655 95 : leArgThrArgPheAspLysLeuAla{Ar} >>>> Target Intron 1 >>> : 103 |||||.!!!:!|||!!:|||:!!.!!{..} 107 bp leArgAlaLysPheGluLysIleThr{Gl}++ 3157656 : TTAGAGCGAAATTCGAGAAGATCACC{GA}gt........................ : 3157686 104 : > {g}ArgAsnAlaValThrTyrThrIleIleIleSerCysTyrIleLeuProTh : 120 {!} !!|||.!!:!! !||| !! :::::: !!! !! ++{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIl 3157687 : .ag{A}TGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTAT : 3157840 121 : rCysAlaMetGlyLeuPheValGlyPheArgAspHisLysLeuLeuSerArgAlaT : 139 !! !!.!! ..!|||!!.:!!! !|||!!!:!!...||||||:!!! !||||||| eTyrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaT 3157841 : ATACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCAT : 3157897 140 : rpLeuProTyrAspTyrSerSerAsnValSerPheSerThrThrLeuIleHisGln : 157 ||:!!||||||||||||||| !! !! !|||! ! !|||! !:!!|||||| rpIleProTyrAspTyrSerProAlaProIlePheIleLeuThrSerValHisGln 3157898 : GGATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTCCGTCCATCAA : 3157951 158 : ValGlyAlaGlnValTyrAlaGlyCysIleThrThrGlySerAspCysLeuPheAs : 176 !.! !|||..!..! ..! !! ! |||..! ! !||| !|||!:!!. AlaIleAlaSerThrIleCysCysThrSerThrValThrValAspThrLeuTyrTh 3157952 : GCTATAGCCTCGACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTATACAC : 3158008 177 : nGlyPheLeuMetHisThrTyrCysHisPheGluIleLeuAsnHisArgLeuLysM : 195 !|||!!.|||!!::!!! !||||||!!.||||||||||||.!.|||||||||!:!! rGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgA 3158009 : TGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGA : 3158065 196 : etIleGluAlaAspLysLysTyrThrLeuLysArgCysThrTyrLeuHisAspTyr : 213 :!!:!!.!!!!::!! ! !!:!!:!!|||!:!|||.!! ! ! !|||||| ! snValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArg 3158066 : ACGTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGT : 3158119 214 : IleTyr{Th} >>>> Target Intron 2 >>>> {r}TyrAlaThrThrVa : 221 ||||||{ } 325 bp {!}!:!:!!! !! !|| IleTyr{Gl}++ ++{n}PheSerLysLysVa 3158120 : ATATAC{CA}gt.........................ag{A}TTTTCGAAAAAGGT : 3158468 222 : lAsnArgArgPheLysIleIleIleMetIleGlnSerLeuValSerIleValThrV : 240 ||||..!..!||||||:!:|||:!:!!: !|||! !! !:!!|||!!: !..!: lAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValI 3158469 : GAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGA : 3158525 241 : alCysCysThrLeuTyrGlnLeuThrGlnValHisLeuGlySerArgPheIleGlu : 258 !!|||! !!.!||||||!:!:!!||||||:!! ! :!!! ::::::|||:::||| leCysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGlu 3158526 : TCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaa : 3158579 259 : ValAlaLeuTyrLeuThrAsnThrLeuIleGlnIlePheTyrTyrCysTrpTyrGl : 277 ::: !||||||! ! ! !|||:!!! |||||||||||||||||||||||||| IleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGl 3158580 : atcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGTTGGTACGG : 3158636 278 : yAsnGluIleLysLeuLysValGlnSerCys : 287 |||||||:!:||| !||||||.!. !||| yAsnGluValLysAspLysValAspHisCys 3158637 : CAACGAAGTGAAAGATAAGGTTGATCATTGT : 3158668 vulgar: Lalb_14664 0 287 . KQ414646.1 3157375 3158668 + 554 M 102 306 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 112 336 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157376 3158668 554 + . gene_id 1 ; sequence Lalb_14664 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3157376 3157683 . + . KQ414646.1 exonerate:protein2genome:local exon 3157376 3157683 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3157684 3157685 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3157684 3157790 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3157789 3157790 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3157791 3158129 . + . KQ414646.1 exonerate:protein2genome:local exon 3157791 3158129 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158130 3158131 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158130 3158454 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3158453 3158454 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158455 3158668 . + . KQ414646.1 exonerate:protein2genome:local exon 3158455 3158668 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157376 3158668 554 + . alignment_id 1 ; Query Lalb_14664 ; Align 3157376 1 306 ; Align 3157792 104 336 ; Align 3158456 217 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14664 [mRNA] [translate_table: standard] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 547 Query range: 0 -> 287 Target range: 3163903 -> 3165196 1 : ProAspSerTrpThrSerProSerLysArgIleLeuTyrSerThrTyrSerAlaPh : 19 ||| !!|||||||||!!!|||! !:!!||| !||||||!:!! !|||.!!!.!|| ProHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPh 3163904 : CCCCATTCGTGGACAACGCCGTTCGAAAGGTCTTTGTACAATATCTACGGGGTGTT : 3163958 20 : eIleTrpPheValMetTyrTrpTrpThrValSerGlnIleLeuAspLeuIleIleG : 38 | !! !.!!:!!:!: ! ! .!!:!!|||||||||||||||:!! |||. eTyrLeuLeuLeuLeuSerSerLeuAlaLeuSerGlnIleLeuAspValAlaIleA 3163959 : CTACTTGCTTCTTCTAAGCAGCCTCGCCCTCTCGCAAATATTAGACGTAGCGATCA : 3164015 39 : lnValLysThrGlnAspGluPheThrAspIlePheTyrAlaThrMetAlaAsnCys : 56 !.|||:!!!:!||||||!!:|||:::||| ||| ||| !.! ! ! snValGluSerGlnAspAspPheSerAspAsnPheSerIleThrAlaValValPhe 3164016 : ACGTGGAGAGCCAGGATGACTTCagtgacaatttttctatcaccGCTGTGGTGTTT : 3164069 57 : CysIleCysAlaLysPheThrAsnValLeuLeuThrArgThrTyrIleAlaAsnMe : 75 !! !! !|||.!!:!!! !:!!|||:!! !||| ! !!.!! ! !:! LeuThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLe 3164070 : CTCACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCT : 3164126 76 : tIleAspArgIleGluLysGluProPheAlaSerLeuAsnValGluGluGluGluI : 94 !||||||! !:!!:!!!!.:!!||||||:!! !!:!!:!!..!||||||.!.|||| uIleAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluI 3164127 : GATCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGA : 3164183 95 : leArgThrArgPheAspLysLeuAla{Ar} >>>> Target Intron 1 >>> : 103 |||||.!!!:!|||!!:|||:!!.!!{..} 107 bp leArgAlaLysPheGluLysIleThr{Gl}++ 3164184 : TTAGAGCGAAATTCGAGAAGATCACC{GA}gt........................ : 3164214 104 : > {g}ArgAsnAlaValThrTyrThrIleIleIleSerCysTyrIleLeuProTh : 120 {!} !!|||.!!:!! !||| !! !:!!:!!! ! !! ! !!! !! ++{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleCysAlaPheTrpIl 3164215 : .ag{A}TGGAACACGATTGGCTACTGGAGTTTACTATTAATTTGTGCGTTCTGGAT : 3164368 121 : rCysAlaMetGlyLeuPheValGlyPheArgAspHisLysLeuLeuSerArgAlaT : 139 !! !!.!! ..!|||!!...!! !|||!!!..!...||||||:!!! !||||||| eTyrValArgSerLeuLeuThrAspPheSerSerArgLysLeuMetPheArgAlaT 3164369 : ATACGTGAGATCGCTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGCAT : 3164425 140 : rpLeuProTyrAspTyrSerSerAsnValSerPheSerThrThrLeuIleHisGln : 157 |||||||||||||||||||| !! !! !|||! ! !|||!!!:!!|||||| rpLeuProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGln 3164426 : GGTTACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAA : 3164479 158 : ValGlyAlaGlnValTyrAlaGlyCysIleThrThrGlySerAspCysLeuPheAs : 176 !.! !||| !..! ..! !! ! !:!..! ! !|||! !|||!:!!. AlaIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrTh 3164480 : GCTATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACAC : 3164536 177 : nGlyPheLeuMetHisThrTyrCysHisPheGluIleLeuAsnHisArgLeuLysM : 195 !|||!!.|||!!::!!! !||||||!!.||||||||||||.!.|||||||||!:!! rGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgA 3164537 : TGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGA : 3164593 196 : etIleGluAlaAspLysLysTyrThrLeuLysArgCysThrTyrLeuHisAspTyr : 213 :!!:!!.!!!!::!! ! !!:!!:!!|||!:!|||.!! ! ! !|||||| ! snValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArg 3164594 : ACGTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGT : 3164647 214 : IleTyr{Th} >>>> Target Intron 2 >>>> {r}TyrAlaThrThrVa : 221 ||||||{ } 325 bp {!}!:!:!!! !! !|| IleTyr{Gl}++ ++{n}PheSerLysLysVa 3164648 : ATATAC{CA}gt.........................ag{A}TTTTCGAAAAAGGT : 3164996 222 : lAsnArgArgPheLysIleIleIleMetIleGlnSerLeuValSerIleValThrV : 240 ||||..!..!||||||:!:|||:!:!!: !|||! !! !:!!|||!!: !..!: lAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValI 3164997 : GAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGA : 3165053 241 : alCysCysThrLeuTyrGlnLeuThrGlnValHisLeuGlySerArgPheIleGlu : 258 !!|||! !!.!||||||!:!:!!||||||:!! ! :!!! ::::::|||:::||| leCysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGlu 3165054 : TCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaa : 3165107 259 : ValAlaLeuTyrLeuThrAsnThrLeuIleGlnIlePheTyrTyrCysTrpTyrGl : 277 ::: !||||||! ! ! !|||:!!! |||||||||||||||||||||||||| IleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGl 3165108 : atcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGG : 3165164 278 : yAsnGluIleLysLeuLysValGlnSerCys : 287 |||||||:!:|||! !||||||.!. !||| yAsnGluValLysHisLysValAspHisCys 3165165 : CAACGAAGTGAAACATAAGGTTGATCATTGT : 3165196 vulgar: Lalb_14664 0 287 . KQ414646.1 3163903 3165196 + 547 M 102 306 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 112 336 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3163904 3165196 547 + . gene_id 2 ; sequence Lalb_14664 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3163904 3164211 . + . KQ414646.1 exonerate:protein2genome:local exon 3163904 3164211 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164212 3164213 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164212 3164318 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3164317 3164318 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164319 3164657 . + . KQ414646.1 exonerate:protein2genome:local exon 3164319 3164657 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164658 3164659 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164658 3164982 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3164981 3164982 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164983 3165196 . + . KQ414646.1 exonerate:protein2genome:local exon 3164983 3165196 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3163904 3165196 547 + . alignment_id 2 ; Query Lalb_14664 ; Align 3163904 1 306 ; Align 3164320 104 336 ; Align 3164984 217 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14664 [mRNA] [translate_table: standard] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 295 Query range: 100 -> 284 Target range: 3150026 -> 3150811 101 : LeuAlaArgArgAsnAlaValThrTyrThrIleIleIleSerCysTyrIleLeuPr : 119 ||| !||| ! .!!:!! !|||||||||:!::!:..! ! :!!||| LeuTyrArgSerValThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCy 3150027 : CTTTACAGGTCGGTGACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTG : 3150081 120 : oThrCysAlaMetGlyLeuPheValGlyPheArgAspHisLysLeuLeuSerArgA : 138 !! ! ! ! ..!|||.!!! !! !|||!.!!!:!..:!!||| !! !|||| sMetIleLeuSerSerLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgA 3150082 : TATGATCCTCTCTTCGTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAG : 3150138 139 : laTrpLeuProTyrAspTyrSerSerAsnValSerPheSerThrThrLeuIleHis : 156 |||||||||||!:!||||||||| ! ..!! !!:!! !! !.!!! !:!!||| laTrpLeuProPheAspTyrSerLeuProThrTyrTyrTyrIleAlaTyrValHis 3150139 : CCTGGCTGCCCTTCGATTACTCTCTGCCAACTTACTATTACATCGCGTACGTTCAT : 3150192 157 : GlnValGlyAlaGlnValTyrAlaGlyCysIleThrThrGlySerAspCysLeuPh : 175 |||:!!! !|||! !:!! !.!!..! ! !.!..!!.!!!!||| :!!.! GlnIleValAlaLeuIleGlyThrSerLeuSerAsnValAlaCysAspValIleIl 3150193 : CAGATCGTCGCGCTGATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCAT : 3150249 176 : eAsnGlyPheLeuMetHisThrTyrCysHisPheGluIleLeuAsnHisArgLeuL : 194 ! !|||!!.|||:!:|||.!!! ! !!!!. |||||||||!!.||||||:!!| eCysGlyLeuLeuValHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMetL 3150250 : CTGCGGGTTGCTCGTTCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATGA : 3150306 195 : ysMetIleGluAlaAspLysLysTyrThrLeuLysArgCysThrTyrLeuHisAsp : 212 || !!!: ! !!!::!!!:! !.!:!! !!:! !..! !!!!|||||| ysGluMetThrGlnGluGlnArgProAsnIleGlyLysIleValArgPheHisAsp 3150307 : AGGAGATGACGCAGGAACAGAGGCCGAATATCGGGAAAATCGTTCGTTTCCACGAT : 3150360 213 : TyrIleTyr{Th} >>>> Target Intron 1 >>>> {r}TyrAlaThrTh : 220 |||:!!|||{ } 230 bp {!}|||!.! !|| TyrLeuTyr{Gl}++ ++{y}TyrValPheTh 3150361 : TATCTTTAC{GG}gt.........................ag{G}TACGTTTTCAC : 3150614 221 : rValAsnArgArgPheLysIleIleIleMetIleGlnSerLeuValSerIleValT : 239 |:!!.!...!!:!|||!:! |||||| :!:||| !||| !|||! :!!. rMetGlnGluLysPheArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuV 3150615 : GATGCAAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGG : 3150671 240 : hrValCysCysThrLeuTyrGlnLeuThrGlnVal<->HisLeuGlySerArgPhe : 256 .!||||||! !! !||||||:!!|||.!!.!...! ! :!!.!!|||!:!!:! alValCysPheIleLeuTyrGluLeuAlaAsnThrProProIleSerSerLysTyr 3150672 : TAGTGTGTTTCATCCTGTACGAATTGGCGAACACGCCTCCAATCAGCTCCAAGTAC : 3150725 257 : IleGluValAlaLeuTyrLeuThrAsnThrLeuIleGlnIlePheTyrTyrCysTr : 275 :!::!! !!!.!|||||||||.!! !! !:!!! |||||||||!:!|||||||| LeuGlnPheValLeuTyrLeuAlaCysMetMetThrGlnIlePhePheTyrCysTr 3150726 : CTGCAATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATCTTCTTTTACTGCTG : 3150782 276 : pTyrGlyAsnGluIleLysLeuLysVal : 284 |||||||.!.:!!:!:|||||||||||| pTyrGlyGluGlnLeuLysLeuLysVal 3150783 : GTACGGCGAGCAGTTGAAACTGAAGGTA : 3150811 vulgar: Lalb_14664 100 284 . KQ414646.1 3150026 3150811 + 295 M 115 345 S 0 2 5 0 2 I 0 226 3 0 2 S 1 1 M 34 102 G 0 3 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150027 3150811 295 + . gene_id 3 ; sequence Lalb_14664 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3150027 3150373 . + . KQ414646.1 exonerate:protein2genome:local exon 3150027 3150373 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150374 3150375 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150374 3150603 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150602 3150603 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150604 3150811 . + . KQ414646.1 exonerate:protein2genome:local exon 3150604 3150811 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150027 3150811 295 + . alignment_id 3 ; Query Lalb_14664 ; Align 3150027 101 345 ; Align 3150605 217 102 ; Align 3150710 251 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14664 [mRNA] [translate_table: standard] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 294 Query range: 100 -> 288 Target range: 3180041 -> 3180682 101 : LeuAlaArgArgAsnAlaValThrTyrThrIleIleIleSerCysTyrIleLeuPr : 119 |||! !|||!:!|||||||||! !||||||!!::!!:!!..! ! :!! ! ! LeuAspArgLysAsnAlaValArgTyrThrMetValValGluMetSerValAlaSe 3180042 : CTCGACAGGAAAAACGCTGTCAGATACACAATGGTAGTCGAGATGTCGGTCGCCTC : 3180096 120 : oThrCysAlaMetGlyLeuPheValGlyPheArgAspHisLysLeuLeuSerArgA : 138 !||| ! !! ..!||| ! ..!..!|||!:! !! !!:!||| !! !|||! rThrIleLeuAsnSerLeuValThrAsnPheGlnHisGlyArgLeuThrTyrArgG 3180097 : GACTATTTTAAACTCGTTAGTGACCAACTTTCAACACGGCAGACTAACCTACAGAG : 3180153 139 : laTrpLeuProTyrAspTyrSerSerAsnValSerPheSerThrThrLeuIleHis : 156 .!|||!!!||||||||||||!!!!!! !||| !||| !! !|||! ! !! lyTrpPheProTyrAspTyrThrThrAlaValLeuPheProLeuThrTyrAlaLeu 3180154 : GCTGGTTCCCTTACGATTACACGACCGCCGTACTTTTTCCATTGACATACGCTCTG : 3180207 157 : GlnValGlyAlaGlnValTyrAlaGlyCysIleThrThrGlySerAspCysLeuPh : 175 |||:!! !..! !:!! !..!!! ||| !..!..! !||| !||||| GlnLeuLeuCysValLeuValTyrSerTrpIleHisValSerValAspIleLeuPh 3180208 : CAGCTATTATGCGTGCTCGTATATTCCTGGATCCACGTTTCAGTGGATATTCTCTT : 3180264 176 : eAsnGlyPheLeuMetHisThrTyrCysHisPheGluIleLeuAsnHisArgLeuL : 194 | !|||.!.||||||!!. !! !|||!!.|||!!:|||||| |||...! ePheGlyLeuLeuMetGlnLeuCysCysGlnPheAspIleLeuPheSerArgPheS 3180265 : CTTCGGACTGTTGATGCAACTGTGCTGTCAATTCGAcattctcttctctcgtttcA : 3180321 195 : ysMetIleGluAlaAspLysLysTyrThrLeuLysArgCysThrTyrLeuHisAsp : 212 ..! ||| !:!!!!:!!.||| !..!|||::!||||||! ! !! !|||||| erSerIleThrSerGluAsnLysGlyValLeuArgArgCysIleArgHisHisAsp 3180322 : GTAGCATAACGTCGGAGAACAAGGGTGTTTTACGAAGATGCATTCGTCATCACGAC : 3180375 213 : TyrIleTyr{Th} >>>> Target Intron 1 >>>> {r}TyrAlaThrTh : 220 ||||||{ } 74 bp {!}! ||| !! ArgIleTyr{Ar}++ ++{g}LeuAlaGluIl 3180376 : AGAATTTAC{CG}gt.........................ag{T}TTAGCTGAAAT : 3180473 221 : rValAsnArgArgPheLysIleIleIleMetIleGlnSerLeuValSerIleValT : 239 !:!!||| !!!!.!.:!!:!:! !!:.!. !|||! !!!!! !|||.!!:!!. eMetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePheGlySerPheMetV 3180474 : AATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTTCGGAAGCTTTATGG : 3180530 240 : hrValCysCysThrLeuTyrGlnLeuThrGlnValHis<->LeuGlySerArgPhe : 256 .!:!!||| !:!||| !|||||| !.!.!.! !! |||.!!!!!..!||| alIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleLeuSerThrGluPhe 3180531 : TGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTCTCAGCACCGAATTC : 3180584 257 : IleGluValAlaLeuTyrLeuThrAsnThrLeuIleGlnIlePheTyrTyrCysTr : 275 :!!! !..! ...||||||:::::: !|||:!:|||! !||| !|||||||| LeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPheLeuTyrCysTr 3180585 : TTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGCTTTCTTTACTGTTG : 3180641 276 : pTyrGlyAsnGluIleLysLeuLysValGlnSerCysArg : 288 |||||||||||||:!:!:! !||||||!::! !! ||| pTyrGlyAsnGluValArgThrLysValArgTyrSerArg 3180642 : GTACGGAAACGAAGTGAGAACGAAGGTTCGCTATTCGAGG : 3180682 vulgar: Lalb_14664 100 288 . KQ414646.1 3180041 3180682 + 294 M 115 345 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 35 105 G 0 3 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180042 3180682 294 + . gene_id 4 ; sequence Lalb_14664 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3180042 3180388 . + . KQ414646.1 exonerate:protein2genome:local exon 3180042 3180388 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3180389 3180390 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3180389 3180462 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3180461 3180462 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3180463 3180682 . + . KQ414646.1 exonerate:protein2genome:local exon 3180463 3180682 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180042 3180682 294 + . alignment_id 4 ; Query Lalb_14664 ; Align 3180042 101 345 ; Align 3180464 217 105 ; Align 3180572 252 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14664 [mRNA] [translate_table: standard] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 200 Query range: 101 -> 217 Target range: 3160050 -> 3160401 102 : AlaArgArgAsnAlaValThrTyrThrIleIleIleSerCysTyrIleLeuProTh : 120 ..!|||!:! !:!!:!!.!!||||||:!! !! ! ! ! ! !.. CysArgLysLeuSerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyVa 3160051 : TGTAGAAAGCTCTCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGT : 3160105 121 : rCysAlaMetGlyLeuPheValGlyPheArgAspHisLysLeuLeuSerArgAlaT : 139 !!! !:!!..! !.!...!!.!|||||| !...:!!|||! ! !|||!.!| lTrpMetLeuSerAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValT 3160106 : ATGGATGTTGTCGGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTAT : 3160162 140 : rpLeuProTyrAspTyrSerSerAsnValSer<->PheSerThrThrLeuIleHis : 156 ||||||||!:!||||||!!!:!!!..:!!.!! |||||| !|||! ! !:!! rpLeuProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyr 3160163 : GGTTACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTAT : 3160216 157 : GlnValGlyAlaGlnValTyrAlaGlyCysIleThrThrGlySerAspCysLeuPh : 175 ||| !!! !.!!! !:!!!:! ! ! ! ! !! !|||!!!||| !||||| GlnPheValThrLeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPh 3160217 : CAGTTTGTAACTCTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATT : 3160273 176 : eAsnGlyPheLeuMetHisThrTyrCysHisPheGluIleLeuAsnHisArgLeuL : 194 |!:!|||.!.|||!!:|||! !||||||!!.||||||||||||.!.|||||||||| eSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuL 3160274 : CAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGA : 3160330 195 : ysMetIleGluAlaAspLysLysTyrThrLeuLysArgCysThrTyrLeuHisAsp : 212 ||! |||:!! !!|||!:!:!!|||:!! !|||!:!|||.!!!:!! !||| !! ysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyr 3160331 : AGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTAT : 3160384 213 : TyrIleTyrThrTyr : 217 !||||||! !!:! ArgIleTyrLysPhe 3160385 : CGCATATACAAGTTT : 3160401 vulgar: Lalb_14664 101 217 . KQ414646.1 3160050 3160401 + 200 M 48 144 G 0 3 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160051 3160401 200 + . gene_id 5 ; sequence Lalb_14664 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160051 3160401 . + . KQ414646.1 exonerate:protein2genome:local exon 3160051 3160401 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160051 3160401 200 + . alignment_id 5 ; Query Lalb_14664 ; Align 3160051 102 144 ; Align 3160198 150 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14664 [mRNA] [translate_table: standard] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 189 Query range: 104 -> 279 Target range: 3153117 -> 3153645 105 : AsnAlaValThrTyrThrIleIleIleSerCysTyrIleLeuProThrCysAlaMe : 123 |||||| !.!!|||||| !.!!:!:..! !! :!!:!! ! !!! !! AsnAlaLysAlaTyrThrTyrPheLeuAspIleLeuValValValLeuTrpIleTh 3153118 : AACGCTAAGGCTTACACATATTTCCTGGACATCTTGGTAGTCGTTTTATGGATAAC : 3153172 124 : tGlyLeuPheValGlyPheArgAspHisLysLeuLeuSerArgAlaTrpLeuProT : 142 ..!! !|||..!! !!:!||| ...|||... |||..!|||||||||| rSerTyrPheThrAspTyrArgArgArgLysPheLysPheArgValTrpLeuProT 3153173 : ATCGTACTTCACGGACTACAGGcgcagaaaattcaaatttcgcgtCTGGTTACCTT : 3153229 143 : yrAspTyrSerSerAsnValSerPheSerThrThrLeuIleHisGlnValGlyAla : 160 ||||| !!!!!!!.!. ! !|||!!! !! !! ! !!!.|||:!!! !..! yrAspThrThrThrGlnProValPheThrLeuIleTyrCysGlnGlnIleValCys 3153230 : ACGACACTACTACACAACCTGTCTTCACTCTGATCTACTGTCAACAGATCGTCTGC : 3153283 161 : GlnValTyrAlaGlyCysIleThrThrGlySerAspCysLeuPheAsnGlyPheLe : 179 ! !|||::!! ! !|||!.!..! !!!!||||||||||||!:!|||.!.:! ThrTrpTyrSerValAsnIleAsnValIleCysAspCysLeuPheSerGlyLeuMe 3153284 : ACGTGGTACAGCGTGAATATTAACGTCATTTGCGACTGCCTGTTCAGCGGCCTGAT : 3153340 180 : uMetHisThrTyrCysHisPheGluIleLeu<-><->AsnHisArgLeuLysMetI : 196 !!!:!!.! !! !! !!!...!! :!! !.!!..||| ! :!!: tIleGlnIleCysSerIleLeuArgLysMetLysProThrArgArgAsnCysValL 3153341 : GATACAGATTTGCTCAATCTTACGGAAGATGAAACCTACTCGGCGAAACTGTGTGC : 3153397 197 : leGluAlaAspLysLysTyrThrLeuLysArgCysThrTyrLeuHisAspTyrIle : 214 !!! .!! ! !:!|||||| !:!! ! ! ::: |||:!! euValThrIleIleArgTyrThrSerGlnSerArgGlnGluIleLysArgTyrVal 3153398 : TCGTCACCATAATCAGATATACAAGCCAGTCTCGacaagaaattaaacgatacgTT : 3153451 215 : TyrThrTyrAlaThrThrValAsnArgArgPheLysIleIleIleMetIleGlnSe : 233 !! ||| !! !||||||..!!:!.!! !! !:!! ! ||||||! ---***LeuAlaGlnIleValAsnGluLysLeuGlyAsnValSerSerIleGlnPh 3153452 : ---TGATTGGCGCAAATAGTGAACGAGAAGCTTGGAAATGTCTCGAGTATACAGTT : 3153505 234 : rLeuValSerIleValThrValCysCysThrLeuTyrGlnLeuThrGlnValHisL : 252 ! !:!!|||! !! !.!!:!!|||! !!.!||||||!:!:!!:!! !:!!.!.| eAlaIleSerThrGlyAlaIleCysPheAsnLeuTyrArgMetSerValIleGluL 3153506 : CGCGATAAGCACAGGAGCGATATGCTTCAATCTCTATCGAATGTCGGTGATAGAAC : 3153562 253 : euGlySerArgPheIleGluValAlaLeuTyrLeuThrAsnThrLeuIleGlnIle : 270 ||||| !!!:!|||:!:|||!.! ! ! ! !..! ! !||| |||||| euGlyProLysPheValGluAlaLeuThrIleThrValCysLeuLeuAlaGlnIle 3153563 : TCGGTCCAAAGTTTGTGGAAGCGTTAACTATCACAGTATGCTTACTCGCGCAGATA : 3153616 271 : PheTyrTyrCysTrpTyrGlyAsnGlu : 279 ||||||||||||||||||||||||::: PheTyrTyrCysTrpTyrGlyAsnAsp 3153617 : TTTTACTATTGTTGGTAcggtaacgat : 3153645 vulgar: Lalb_14664 104 279 . KQ414646.1 3153117 3153645 + 189 M 85 255 G 0 6 M 25 75 G 1 0 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153118 3153645 189 + . gene_id 6 ; sequence Lalb_14664 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153118 3153645 . + . KQ414646.1 exonerate:protein2genome:local exon 3153118 3153645 . + . insertions 6 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3153118 3153645 189 + . alignment_id 6 ; Query Lalb_14664 ; Align 3153118 105 255 ; Align 3153379 190 75 ; Align 3153454 216 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14664 [mRNA] [translate_table: standard] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 181 Query range: 0 -> 120 Target range: 3154975 -> 3155335 1 : ProAspSerTrpThrSerProSerLysArgIleLeuTyrSerThrTyrSerAlaPh : 19 ||| |||! .!! !!! !! !||||||.!! !||||||..!!:!||| !!: ProProSerSerAlaProLeuPheLysArgPheAlaTyrSerValPheSerTrpTy 3154976 : CCGCCATCATCAGCTCCGCTGTTTAAAAGATTCGCCTACTCTGTATTCTCGTGGTA : 3155030 20 : eIleTrpPheValMetTyrTrpTrpThrValSerGlnIleLeuAspLeuIleIleG : 38 !! ! .!.:!!:!!||| !..! !!|||||||||:!!|||||||||:!:. rThrLeuIleLeuValTyrIleThrValPheSerGlnIleMetAspLeuIleValA 3155031 : CACGTTAATACTGGTGTACATCACGGTTTTCAGCCAAATCATGGACCTAATCGTGA : 3155087 39 : lnValLysThrGlnAspGluPheThrAspIlePheTyrAlaThrMetAlaAsnCys : 56 !.|||! !|||||||||||||||!:!|||! !|||||| ! !:!!||| !... snValThrThrGlnAspGluPheSerAspAsnPheTyrIleLeuLeuAlaCysAla 3155088 : ACGTGACGACTCAAGACGAGTTTAGCGACAATTTTTACATACTTCTGGCGTGTGCG : 3155141 57 : CysIleCysAlaLysPheThrAsnValLeuLeuThrArgThrTyrIleAlaAsnMe : 75 !! !||| !!:!|||||| !!:!|||! ! !!:!! !..!|| IleSerLeuGlnLysAlaGlnSerValLeuAsnSerArgLysAsnValHisArgMe 3155142 : ATATCCTTGCAGAAAGCACAGAGTGTGTTAAACAGTCGTAAGAATGTCCACCGTAT : 3155198 76 : tIleAspArgIleGluLysGluProPheAlaSerLeuAsnValGluGluGluGluI : 94 |||||||! !:!:.!.!..||||||||| ! !! ! ! !|||||| |||| tIleAspLeuLeuAsnSerGluProPheHisProGluCysLysGluGluIleGluI 3155199 : GATCGATCTTTTGAACAGCGAACCTTTTCATCCAGAATGTAAGGAGGAAATCGAGA : 3155255 95 : leArgThrArgPheAspLysLeuAlaArgArgAsnAlaValThrTyrThrIleIle : 112 |||||!:!|||.!!..!:!!! !|||||| |||||| !:!! leArgSerArgIleSerGluHisAlaArg***ValLeuHisPheTyrThrGlyLeu 3155256 : TAAGAAGTAGGATCTCCGAGCACGCCAGGTaagttcttcatttttatacagGCTTA : 3155309 113 : IleSerCysTyrIleLeuProThr : 120 |||||| ::::::... ||| IleSerProPheValPheLeuThr 3155310 : ATCtctccttttgtttttttaacg : 3155335 vulgar: Lalb_14664 0 120 . KQ414646.1 3154975 3155335 + 181 M 120 360 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3154976 3155335 181 + . gene_id 7 ; sequence Lalb_14664 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3154976 3155335 . + . KQ414646.1 exonerate:protein2genome:local exon 3154976 3155335 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3154976 3155335 181 + . alignment_id 7 ; Query Lalb_14664 ; Align 3154976 1 360 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14664 [mRNA] [translate_table: standard] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 0 -> 100 Target range: 3159674 -> 3159974 1 : ProAspSerTrpThrSerProSerLysArgIleLeuTyrSerThrTyrSerAlaPh : 19 ||| ||||||! !||||||.!! !!:!:!!||||||!:!..!:!!!!!!.! ProThrSerTrpLysSerProGlyLeuLysLeuLeuTyrAsnValHisThrValTh 3159675 : CCAACATCGTGGAAGTCACCGGGGCTAAAGCTTCTCTATAACGTACACACGGTTAC : 3159729 20 : eIleTrpPheValMetTyrTrpTrpThrValSerGlnIleLeuAspLeuIleIleG : 38 !:!! ! ! |||:!: ! !!:: !|||:!!||||||||||||:::|||.... rValValValValLeuSerThrPhePheValAlaGlnIleLeuAspIleIlePheA 3159730 : TGTAGTGGTAGTTCTTAGCACGTTTTTCGTCGCCCAGATATTggacattattttca : 3159786 39 : lnValLysThrGlnAspGluPheThrAspIlePheTyrAlaThrMetAlaAsnCys : 56 ..|||:!!!.!||||||||||||!:!|||! !|||! ! !||| ..! snValGluAsnGlnAspGluPheSerAspAsnPheCysIleThrCysCysValMet 3159787 : acgtgGAGAATCAAGACGAGTTTAGCGACAATTTCTGCATAACGTGCTGCGTGATG : 3159840 57 : CysIleCysAlaLysPheThrAsnValLeuLeuThrArgThrTyrIleAlaAsnMe : 75 !! ! !!.!|||!!. !!:!:!!|||:!! !||| ! ||| !|||:! AsnSerLeuGlyLysLeuTyrSerLeuLeuIleGlyArgGluMetIleGlnAsnLe 3159841 : AACAGCCTTGGAAAGTTGTACAGCTTGCTGATAGGACGAGAAATGATCCAAAATTT : 3159897 76 : tIleAspArgIleGluLysGluProPheAlaSerLeuAsnValGluGluGluGluI : 94 :|||||| !:!!:!!!..!!:|||.!! ! !!|||:!!! !! !|||.!.|||| uIleAspSerLeuGlnSerAspProLeuArgProLeuAspGluValGluAsnGluI 3159898 : AATAGACTCGCTACAAAGTGACCCTCTTAGGCCGTTGGACGAAGTGGAGAATGAAA : 3159954 95 : leArgThrArgPheAspLys : 100 ||||| !||| !!!:||| leArgLeuArgHisGluLys 3159955 : TTCGATTGAGACACGAGAAG : 3159974 vulgar: Lalb_14664 0 100 . KQ414646.1 3159674 3159974 + 177 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3159675 3159974 177 + . gene_id 8 ; sequence Lalb_14664 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3159675 3159974 . + . KQ414646.1 exonerate:protein2genome:local exon 3159675 3159974 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3159675 3159974 177 + . alignment_id 8 ; Query Lalb_14664 ; Align 3159675 1 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14664 [mRNA] [translate_table: standard] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 214 -> 285 Target range: 3160720 -> 3160933 215 : TyrThrTyrAlaThrThrValAsnArgArgPheLysIleIleIleMetIleGlnSe : 233 !:!! !!:!||| !! !:!!||| !!:!|||!..|||! !!: ! |||! PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3160721 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3160775 234 : rLeuValSerIleValThrValCysCysThrLeuTyrGlnLeuThrGlnValHisL : 252 !||||||!!!! !:!!|||:!!|||! !!.!|||!:!!:!|||||||||..! ! : eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3160776 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3160832 253 : euGlySerArgPheIleGluValAlaLeuTyrLeuThrAsnThrLeuIleGlnIle : 270 !! !|||!:! !!:!!! !:!! !! !!:!:!!..!!:!..!!!! !|||||| alTyrSerGlnValLeuAlaLeuIleProPheMetValSerValPheAlaGlnIle 3160833 : TGTATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATA : 3160886 271 : PheTyrTyrCysTrpTyrGlyAsnGluIleLysLeuLysValGln : 285 ||||||! !||||||||||||||||||! !|||:!!||||||!:: PheTyrCysCysTrpTyrGlyAsnGluThrLysValLysValArg 3160887 : TTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGGTACGT : 3160933 vulgar: Lalb_14664 214 285 . KQ414646.1 3160720 3160933 + 155 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160721 3160933 155 + . gene_id 9 ; sequence Lalb_14664 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160721 3160933 . + . KQ414646.1 exonerate:protein2genome:local exon 3160721 3160933 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160721 3160933 155 + . alignment_id 9 ; Query Lalb_14664 ; Align 3160721 215 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14664 [mRNA] [translate_table: standard] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 214 -> 285 Target range: 3174931 -> 3175144 215 : TyrThrTyrAlaThrThrValAsnArgArgPheLysIleIleIleMetIleGlnSe : 233 !:!! !!:!||| !! !:!!||| !!:!|||!..|||! !!: ! |||! PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3174932 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3174986 234 : rLeuValSerIleValThrValCysCysThrLeuTyrGlnLeuThrGlnValHisL : 252 !||||||!!!! !:!!|||:!!|||! !!.!|||!:!!:!|||||||||..! ! : eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3174987 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3175043 253 : euGlySerArgPheIleGluValAlaLeuTyrLeuThrAsnThrLeuIleGlnIle : 270 !! !|||!:! !!:!!! !:!! !! !!:!:!!..!!:!..!!!! !|||||| alTyrSerGlnValLeuAlaLeuIleProPheMetValSerValPheAlaGlnIle 3175044 : TGTATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATA : 3175097 271 : PheTyrTyrCysTrpTyrGlyAsnGluIleLysLeuLysValGln : 285 ||||||! !||||||||||||||||||! !|||:!!||||||!:: PheTyrCysCysTrpTyrGlyAsnGluThrLysValLysValArg 3175098 : TTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGGTACGT : 3175144 vulgar: Lalb_14664 214 285 . KQ414646.1 3174931 3175144 + 155 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174932 3175144 155 + . gene_id 10 ; sequence Lalb_14664 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174932 3175144 . + . KQ414646.1 exonerate:protein2genome:local exon 3174932 3175144 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3174932 3175144 155 + . alignment_id 10 ; Query Lalb_14664 ; Align 3174932 215 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14664 [mRNA] [translate_table: standard] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 202 -> 291 Target range: 3155769 -> 3156036 203 : ThrLeuLysArgCysThrTyrLeuHisAspTyrIleTyrThrTyrAlaThrThrVa : 221 ||||||::: ...:::||||||||| !! ! ! !!:!.!!.!!! !:! ThrLeuGlnVal***AsnPheLeuHisAspAsnCys---ArgPheThrAlaMetIl 3155770 : ACTTTGcaagtgtgaaattttctgcACGATAATTGC---AGATTCACCGCTATGAT : 3155821 222 : lAsnArgArgPheLysIleIleIleMetIleGlnSerLeuValSerIleValThrV : 240 !|||..!!:!|||:!!!!: |||.!.! !|||! ! !||||||! :!!.!!: eAsnGluGlnPheGluMetAlaIlePheThrGlnPheAlaValSerThrLeuAlaI 3155822 : AAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGTGAGTACGCTGGCGA : 3155878 241 : alCysCysThrLeuTyrGlnLeuThrGlnValHisLeuGlySer<->ArgPheIle : 257 !!|||! !!.!||||||! !|||||| ! ! !!:!! ! !! |||!:!:!: leCysPheAsnLeuTyrLeuLeuThrGlySerAspValThrProIleArgTyrVal 3155879 : TATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGACGCCGATTAGGTATGTG : 3155932 258 : GluValAlaLeuTyrLeuThrAsnThrLeuIleGlnIlePheTyrTyrCysTrpTy : 276 |||:!! !:!!||| !!:! !! !|||! ||||||||| !||||||||||| GluIleIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysTrpTy 3155933 : GAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTGGTA : 3155989 277 : rGlyAsnGluIleLysLeuLysValGlnSerCysArgArgGlnSer : 291 ||||||||||:!!||||||||||||...! !! !|||!.! ||| rGlyAsnGluValLysLeuLysValSerTyrPheArgHisCysSer 3155990 : CGGGAACGAAGTTAAGCTGAAGGTTTCTTATTTTCGACATTGTTCA : 3156036 vulgar: Lalb_14664 202 291 . KQ414646.1 3155769 3156036 + 150 M 12 36 G 1 0 M 39 117 G 0 3 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155770 3156036 150 + . gene_id 11 ; sequence Lalb_14664 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155770 3156036 . + . KQ414646.1 exonerate:protein2genome:local exon 3155770 3156036 . + . insertions 3 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3155770 3156036 150 + . alignment_id 11 ; Query Lalb_14664 ; Align 3155770 203 36 ; Align 3155806 216 117 ; Align 3155926 255 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14664 [mRNA] [translate_table: standard] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 211 -> 284 Target range: 3178372 -> 3178594 212 : AspTyrIleTyrThrTyrAlaThrThrValAsnArgArgPheLysIleIleIleMe : 230 ::::::||| !:!.!! !|||||||||! ! !|||:!! !!!:|||.! AsnPheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePh 3178373 : aatttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTT : 3178427 231 : tIleGlnSerLeuValSerIleValThrValCysCysThrLeuTyrGlnLeuThrG : 249 .:!:|||! !! !:!!||| ..!..!:!!|||! !:!:!!|||:!!:!!:!! eLeuGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerT 3178428 : CCTGCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGA : 3178484 250 : lnValHis<->LeuGlySerArgPheIleGluValAlaLeuTyrLeuThrAsnThr : 266 !:!!:!! !!!.!!! !!.!|||:!! ! !|||! !|||||| ! !! ! hrIleAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMet 3178485 : CGATTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATG : 3178538 267 : LeuIleGlnIlePheTyrTyrCysTrpTyrGlyAsnGluIleLysLeuLysVal : 284 |||! |||:!:!:!! |||||||||!:!|||||||||:!:! !||||||||| LeuThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLysVal 3178539 : CTCACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAGGTT : 3178594 vulgar: Lalb_14664 211 284 . KQ414646.1 3178372 3178594 + 132 M 40 120 G 0 3 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178373 3178594 132 + . gene_id 12 ; sequence Lalb_14664 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178373 3178594 . + . KQ414646.1 exonerate:protein2genome:local exon 3178373 3178594 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178373 3178594 132 + . alignment_id 12 ; Query Lalb_14664 ; Align 3178373 212 120 ; Align 3178496 252 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14666 [mRNA] [translate_table: standard] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 352 Query range: 0 -> 233 Target range: 3159620 -> 3160395 1 : MetProThrLeuGlnCysAlaSerThrIleLeuThrValIleGlyCysHisArgPr : 19 |||! !|||||||||! :!!! !! !! !||||||:!! !|||! ! ||||| MetHisThrLeuGlnLeuSerLeuLysThrLeuThrIleCysGlyTyrIleArgPr 3159621 : ATGCACACGTTGCAATTGTCGTTGAAAACTTTGACGATTTGCGGCTACATAAGGCC : 3159675 20 : oProSerTrpThrSerGluProMetLysPheLeuTyrLysValTyrArgIleIleI : 38 | !!||||||! !||| ! !:!:|||.!!||||||!!.|||:!!! !:!!! !: oThrSerTrpLysSerProGlyLeuLysLeuLeuTyrAsnValHisThrValThrV 3159676 : AACATCGTGGAAGTCACCGGGGCTAAAGCTTCTCTATAACGTACACACGGTTACTG : 3159732 39 : leLeuValLeuValGlnValLeuThrLeuIleThrIleLeuAspIleValPheAsn : 56 !!:!!|||:!!:!!.....!!!! !:!! ! !||||||||||||:::|||||| alValValValLeuSerThrPhePheValAlaGlnIleLeuAspIleIlePheAsn 3159733 : TAGTGGTAGTTCTTAGCACGTTTTTCGTCGCCCAGATATTggacattattttcaac : 3159786 57 : ValLysAsnGlnAspGluIleSerAspAsnLeuValLeuThrIleProMetLeuIl : 75 |||:!!||||||||||||.!!|||||||||!!! !:!!||| ! !:!!:!!! ValGluAsnGlnAspGluPheSerAspAsnPheCysIleThrCysCysValMetAs 3159787 : gtgGAGAATCAAGACGAGTTTAGCGACAATTTCTGCATAACGTGCTGCGTGATGAA : 3159843 76 : eThrCysCysLysPheCysSerPheLeuAlaArgGlyAspAsnIleMetValLeuI : 94 !!:! ! ! |||!!.! !|||!!.||| ! !! !!!!:! |||... !|||| nSerLeuGlyLysLeuTyrSerLeuLeuIleGlyArgGluMetIleGlnAsnLeuI 3159844 : CAGCCTTGGAAAGTTGTACAGCTTGCTGATAGGACGAGAAATGATCCAAAATTTAA : 3159900 95 : leAsnThrLeuGlnGlnLysProTyrSerProGluAsnIleLeuGluLysAspVal : 112 ||:!!:!!||||||... ! ||| !!!!||| !:!! !:!!|||!!.!!::!! leAspSerLeuGlnSerAspProLeuArgProLeuAspGluValGluAsnGluIle 3159901 : TAGACTCGCTACAAAGTGACCCTCTTAGGCCGTTGGACGAAGTGGAGAATGAAATT : 3159954 113 : GluThrLysPheAspLysHisAsn{Gl} >>>> Target Intron 1 >>>> : 121 ..! !!:! !!!:||| ! !{||} 73 bp ArgLeuArgHisGluLysThrIle{Gl}++ + 3159955 : CGATTGAGACACGAGAAGACAATC{GA}gt.........................a : 3160054 122 : {u}ArgValThrAlaLeuTyrThrPheSerThrGluAlaCysIleValMetIleL : 139 {|}!:!:!!:!! ! !|||||| !!!!!|||! ! ! !! ..! :!!! +{u}LysLeuSerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValT 3160055 : g{A}AAGCTCTCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTAT : 3160108 140 : euLeuThrThrLeuIleThrAsnGlyLysAsnLysMetLeuAlaTyrArgLeuTrp : 157 !:!! !:!! !!!:||| !!:!! !!:! !||| !! !|||:!!||| rpMetLeuSerAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrp 3160109 : GGATGTTGTCGGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGG : 3160162 158 : IleProPheAspTyrSerAlaProVal<->ValTyrAlaIleIlePheAlaLeuGl : 175 :!!||||||||||||!!!||| !!:!! :!!!:!::!:!!! !!:!|||! !|| LeuProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGl 3160163 : TTACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCA : 3160219 176 : nAlaValSerValIleIleSerSerLeuMetAsnValThrTyrAspAlaLeuPheS : 194 | !|||!!!:!!|||.!!! !!!! ! !! !:!! ! !||| !||||||| nPheValThrLeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheS 3160220 : GTTTGTAACTCTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCA : 3160276 195 : erGlyLeuMetPheCysIleTyrSerGlnLeuGluIleLeuGlyLeuArgLeuGln : 212 ||||||||:!!.!! !||||||!!!|||!!!||||||||| !! !||||||:!! erGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLys 3160277 : GCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAG : 3160330 213 : AsnValValLysAsnGlyLysAspThrAlaArgGluCysAlaArgHisHisAsnPh : 231 !:!:!! ! :!! !!:!! !!:!!|||!:!:!!|||||| !|||||| !! SerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrAr 3160331 : AGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCG : 3160387 232 : eLeuTyr : 233 !:!!||| gIleTyr 3160388 : CATATAC : 3160395 vulgar: Lalb_14666 0 233 . KQ414646.1 3159620 3160395 + 352 M 120 360 S 0 2 5 0 2 I 0 69 3 0 2 S 1 1 M 45 135 G 0 3 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3159621 3160395 352 + . gene_id 1 ; sequence Lalb_14666 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3159621 3159982 . + . KQ414646.1 exonerate:protein2genome:local exon 3159621 3159982 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3159983 3159984 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3159983 3160055 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3160054 3160055 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3160056 3160395 . + . KQ414646.1 exonerate:protein2genome:local exon 3160056 3160395 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3159621 3160395 352 + . alignment_id 1 ; Query Lalb_14666 ; Align 3159621 1 360 ; Align 3160057 122 135 ; Align 3160195 167 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14666 [mRNA] [translate_table: standard] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 323 Query range: 0 -> 233 Target range: 3154921 -> 3155736 1 : MetProThrLeuGlnCysAlaSerThrIleLeuThrValIleGlyCysHisArgPr : 19 |||! ! !|||||| ! ! !.!!! !.!!:!! !||| ! ! !|| MetHisLeuLeuGlnLysGlnLeuGlnPheCysAlaMetCysGlyLeuTrpProPr 3154922 : ATGCATCTACTGCAAAAACAACTGCAATTTTGCGCAATGTGCGGTCTCTGGCCACC : 3154976 20 : oProSerTrpThrSerGluProMetLysPheLeuTyrLysValTyrArgIleIleI : 38 |||||||! .!! !! ! !! !:!||| !|||...|||!:! ! !! oProSerSerAlaProLeuPheLysArgPheAlaTyrSerValPheSerTrpTyrT 3154977 : GCCATCATCAGCTCCGCTGTTTAAAAGATTCGCCTACTCTGTATTCTCGTGGTACA : 3155033 39 : leLeuValLeuValGlnValLeuThrLeuIleThrIleLeuAspIleValPheAsn : 56 |||:!!|||||| ! :!! !..!!!!! ! !|||:!!|||:!!:!! ! ||| hrLeuIleLeuValTyrIleThrValPheSerGlnIleMetAspLeuIleValAsn 3155034 : CGTTAATACTGGTGTACATCACGGTTTTCAGCCAAATCATGGACCTAATCGTGAAC : 3155087 57 : ValLysAsnGlnAspGluIleSerAspAsnLeuValLeuThrIleProMetLeuIl : 75 |||! !!.!|||||||||.!!|||||||||!!! !:!! !:!: !! !|| ValThrThrGlnAspGluPheSerAspAsnPheTyrIleLeuLeuAlaCysAlaIl 3155088 : GTGACGACTCAAGACGAGTTTAGCGACAATTTTTACATACTTCTGGCGTGTGCGAT : 3155144 76 : eThrCysCysLysPheCysSerPheLeuAlaArgGlyAspAsnIleMetValLeuI : 94 |:!!! ||| ||| ! ||| !!!! !! ! |||:!! !:!!| eSerLeuGlnLysAlaGlnSerValLeuAsnSerArgLysAsnValHisArgMetI 3155145 : ATCCTTGCAGAAAGCACAGAGTGTGTTAAACAGTCGTAAGAATGTCCACCGTATGA : 3155201 95 : leAsnThrLeuGlnGlnLysProTyrSerProGluAsnIleLeuGluLysAspVal : 112 ||:!! !|||.!....:!!|||!:! !|||||| !! !|||! !!::!! leAspLeuLeuAsnSerGluProPheHisProGluCysLysGluGluIleGluIle 3155202 : TCGATCTTTTGAACAGCGAACCTTTTCATCCAGAATGTAAGGAGGAAATCGAGATA : 3155255 113 : GluThrLysPheAspLysHisAsn{Gl} >>>> Target Intron 1 >>>> : 121 ..!!:!!:!.!!..!:!!||| !{..} 119 bp ArgSerArgIleSerGluHisAla{Ar}++ + 3155256 : AGAAGTAGGATCTCCGAGCACGCC{AG}gt.........................a : 3155401 122 : {u}ArgValThrAlaLeuTyrThrPheSerThrGluAlaCysIleValMetIleL : 139 {!}||| !:!!.!!! !|||.!!.!! !..!|||:!! :!::!!! :!:! +{g}ArgSerSerThrTyrTyrAlaIleLeuValGluSerThrValMetThrLeuS 3155402 : g{A}AGAAGCTCAACCTATTACGCGATTCTGGTCGAATCGACGGTGATGACTTTGT : 3155455 140 : euLeuThrThrLeuIleThrAsnGlyLysAsnLysMetLeuAlaTyrArgLeuTrp : 157 !!!! !.!!|||:!: !!. !:!!:::::: ||| !!||||||:!!||| erPheGlyAlaLeuLeu---LysProGluSerArgProLeuProTyrArgIleTrp 3155456 : CTTTCGGTGCACTGTTG---AAACCAGAATCACGTCCTTTACCGTATCGAATTTGG : 3155506 158 : IleProPheAspTyrSerAlaProValValTyrAlaIleIlePheAlaLeuGlnAl : 176 :!!|||! !:!!|||!!! !! !:!!..!|||..! |||!:!.!!||||||.. LeuProCysAsnTyrThrProLeuIleThrTyrCysSerIleTyrThrLeuGlnCy 3155507 : CTACCTTGCAATTACACCCCGTTAATTACTTACTGTTCGATTTACACTCTCCAATG : 3155563 177 : aValSerValIleIleSerSerLeuMetAsnValThrTyrAspAlaLeuPheSerG : 195 !|||:!!:!! !:!!|||:!!:!!|||:!!|||.!!! !|||::!|||.!!!!!| sValAlaLeuAlaLeuSerAlaMetMetHisValAlaCysAspSerLeuIleCysG 3155564 : TGTGGCACTCGCTCTAAGCGCTATGATGCACGTCGCCTGCGACAGTTTGATCTGCG : 3155620 196 : lyLeuMetPheCysIleTyrSerGlnLeuGluIleLeuGlyLeuArgLeuGlnAsn : 213 |||||:!!!!. !! !|||.!!|||:!!||||||||||||! !||||||:::... lyLeuLeuLeuHisThrTyrGlyGlnIleGluIleLeuGlyCysArgLeuLysThr 3155621 : GCCTGCTGTTACACACTTACGGCCAGATCGAGATCCTCGGTTGTCGTCTGAaaacg : 3155674 214 : ValValLysAsnGlyLysAspThrAlaArgGluCysAlaArgHisHisAsnPheLe : 232 ::: :::||| ... ! |||:!!!:! !|||!.!|||:!!:!!|||.!!:! IleLysGluAsnGluSerLysThrSerLysLeuCysValArgTyrAsnAsnLeuIl 3155675 : ataaaagaaaacgagagtAAGACGTCCAAGTTGTGCGTTCGTTACAACAACCTTAT : 3155731 233 : uTyr : 233 !||| eTyr 3155732 : CTAT : 3155736 vulgar: Lalb_14666 0 233 . KQ414646.1 3154921 3155736 + 323 M 120 360 S 0 2 5 0 2 I 0 115 3 0 2 S 1 1 M 23 69 G 1 0 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3154922 3155736 323 + . gene_id 2 ; sequence Lalb_14666 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3154922 3155283 . + . KQ414646.1 exonerate:protein2genome:local exon 3154922 3155283 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3155284 3155285 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3155284 3155402 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3155401 3155402 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3155403 3155736 . + . KQ414646.1 exonerate:protein2genome:local exon 3155403 3155736 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3154922 3155736 323 + . alignment_id 2 ; Query Lalb_14666 ; Align 3154922 1 360 ; Align 3155404 122 69 ; Align 3155473 146 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14666 [mRNA] [translate_table: standard] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 191 Query range: 122 -> 233 Target range: 3150038 -> 3150371 123 : ValThrAlaLeuTyrThrPheSerThrGluAlaCysIleValMetIleLeuLeuTh : 141 |||||| !! !||||||.!! !..!||| ! :!!:!! !!::!!|||:! ValThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCysMetIleLeuSe 3150039 : GTGACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTGTATGATCCTCTC : 3150093 142 : rThrLeuIleThrAsnGlyLysAsnLysMetLeuAlaTyrArgLeuTrpIleProP : 160 !:!!|||:!! !:!! !!!..!.::! |||||||||||| !|||:!:|||| rSerLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgAlaTrpLeuProP 3150094 : TTCGTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAGCCTGGCTGCCCT : 3150150 161 : heAspTyrSerAlaProValValTyrAlaIleIlePheAlaLeuGlnAlaValSer : 178 ||||||||||| !|||..! !||| !||| !:!!.!! !||| !|||:!! heAspTyrSerLeuProThrTyrTyrTyrIleAlaTyrValHisGlnIleValAla 3150151 : TCGATTACTCTCTGCCAACTTACTATTACATCGCGTACGTTCATCAGATCGTCGCG : 3150204 179 : ValIleIleSerSerLeuMetAsnValThrTyrAspAlaLeuPheSerGlyLeuMe : 197 :!!||| !!!!|||||| !||||||.!!! !|||!.!:!!.!!!!!||||||:! LeuIleGlyThrSerLeuSerAsnValAlaCysAspValIleIleCysGlyLeuLe 3150205 : CTGATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCATCTGCGGGTTGCT : 3150261 198 : tPheCysIleTyrSerGlnLeuGluIleLeuGlyLeuArgLeuGlnAsnValValL : 216 : !! ! !! !.!!|||! !||||||||| !! !|||:!!:!!.!.:!!..!: uValHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMetLysGluMetThrG 3150262 : CGTTCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATGAAGGAGATGACGC : 3150318 217 : ysAsnGlyLysAspThrAlaArgGluCysAlaArgHisHisAsnPheLeuTyr : 233 !!.!. !!:! !.! ! !!:!! !!.!||| !|||:!!!:!|||||| lnGluGlnArgProAsnIleGlyLysIleValArgPheHisAspTyrLeuTyr 3150319 : AGGAACAGAGGCCGAATATCGGGAAAATCGTTCGTTTCCACGATTATCTTTAC : 3150371 vulgar: Lalb_14666 122 233 . KQ414646.1 3150038 3150371 + 191 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150039 3150371 191 + . gene_id 3 ; sequence Lalb_14666 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150039 3150371 . + . KQ414646.1 exonerate:protein2genome:local exon 3150039 3150371 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150039 3150371 191 + . alignment_id 3 ; Query Lalb_14666 ; Align 3150039 123 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14666 [mRNA] [translate_table: standard] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 189 Query range: 136 -> 233 Target range: 3157836 -> 3158127 137 : MetIleLeuLeuThrThrLeuIleThrAsnGlyLysAsnLysMetLeuAlaTyrAr : 155 .!.|||! !:!!! !:!!|||:!:! !:!! !!..|||!:!! ||| !!:!|| PheIleTyrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheAr 3157837 : TTTATATACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCG : 3157891 156 : gLeuTrpIleProPheAspTyrSerAlaProValValTyrAlaIleIlePheAlaL : 174 | !|||||||||!:!||||||||| !! !! !:!!!:! !:!!! !! !!.!! gAlaTrpIleProTyrAspTyrSerProAlaProIlePheIleLeuThrSerValH 3157892 : AGCATGGATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTCCGTCC : 3157948 175 : euGlnAlaValSerValIleIleSerSerLeuMetAsnValThrTyrAspAlaLeu : 192 !||||||:!!:!! !! |||!!!!!! ! !!.!|||||| |||.!!||| isGlnAlaIleAlaSerThrIleCysCysThrSerThrValThrValAspThrLeu 3157949 : ATCAAGCTATAGCCTCGACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTA : 3158002 193 : PheSerGlyLeuMetPheCysIleTyrSerGlnLeuGluIleLeuGlyLeuArgLe : 211 !:!!!!||||||:!!.!! !||||||!!!|||!!!|||||||||! !! !||||| TyrThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLe 3158003 : TACACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCT : 3158059 212 : uGlnAsnValValLysAsnGlyLysAspThrAlaArgGluCysAlaArgHisHisA : 230 |::!|||||| !! .!. ! ! |||:!!!.!!:!:!!||||||!:!||||||: uArgAsnValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisA 3158060 : AAGGAACGTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACG : 3158116 231 : snPheLeuTyr : 233 !! !:!!||| spArgIleTyr 3158117 : ATCGTATATAC : 3158127 vulgar: Lalb_14666 136 233 . KQ414646.1 3157836 3158127 + 189 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157837 3158127 189 + . gene_id 4 ; sequence Lalb_14666 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3157837 3158127 . + . KQ414646.1 exonerate:protein2genome:local exon 3157837 3158127 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157837 3158127 189 + . alignment_id 4 ; Query Lalb_14666 ; Align 3157837 137 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14666 [mRNA] [translate_table: standard] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 126 -> 215 Target range: 3153129 -> 3153396 127 : TyrThrPheSerThrGluAlaCysIleValMetIleLeuLeuThrThrLeuIleTh : 145 ||||||!:!! ! !!!: !! :!!|||:!::!!! !:!!|||:!!! !.!!|| TyrThrTyrPheLeuAspIleLeuValValValLeuTrpIleThrSerTyrPheTh 3153130 : TACACATATTTCCTGGACATCTTGGTAGTCGTTTTATGGATAACATCGTACTTCAC : 3153184 146 : rAsnGlyLysAsnLysMetLeuAlaTyrArgLeuTrpIleProPheAspTyrSerA : 164 |:!! !!:!...::: ... :::|||::!|||:!!|||!:!||| !!!!. rAspTyrArgArgArgLysPheLysPheArgValTrpLeuProTyrAspThrThrT 3153185 : GGACTACAGGcgcagaaaattcaaatttcgcgtCTGGTTACCTTACGACACTACTA : 3153241 165 : laProValValTyrAlaIleIlePheAlaLeuGlnAlaValSerValIleIleSer : 182 !!! ! !|||!:!.!!:!:|||!:!..!! !||| !|||!!!..! !||| hrGlnProValPheThrLeuIleTyrCysGlnGlnIleValCysThrTrpTyrSer 3153242 : CACAACCTGTCTTCACTCTGATCTACTGTCAACAGATCGTCTGCACGTGGTACAGC : 3153295 183 : SerLeuMetAsnValThrTyrAspAlaLeuPheSerGlyLeuMetPheCysIleTy : 201 ! !!!:||||||! !! !|||..!||||||||||||||||||.!. |||! ValAsnIleAsnValIleCysAspCysLeuPheSerGlyLeuMetIleGlnIleCy 3153296 : GTGAATATTAACGTCATTTGCGACTGCCTGTTCAGCGGCCTGATGATACAGATTTG : 3153352 202 : rSerGlnLeuGluIleLeuGlyLeuArgLeuGlnAsnValVal : 215 !||| |||..!! :!! !! !! !! !!:!||| !||| sSerIleLeuArgLysMetLysProThrArgArgAsnCysVal 3153353 : CTCAATCTTACGGAAGATGAAACCTACTCGGCGAAACTGTGTG : 3153396 vulgar: Lalb_14666 126 215 . KQ414646.1 3153129 3153396 + 130 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153130 3153396 130 + . gene_id 5 ; sequence Lalb_14666 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153130 3153396 . + . KQ414646.1 exonerate:protein2genome:local exon 3153130 3153396 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153130 3153396 130 + . alignment_id 5 ; Query Lalb_14666 ; Align 3153130 127 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14666 [mRNA] [translate_table: standard] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 158 -> 233 Target range: 3174378 -> 3174606 159 : ProPheAspTyrSerAlaProVal<->ValTyrAlaIleIlePheAlaLeuGlnAl : 176 ||||||||||||!!!||| !!:!! :!!!:!::!:!!! !!:!|||! !||| ProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGlnPh 3174379 : CCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAGTT : 3174433 177 : aValSerValIleIleSerSerLeuMetAsnValThrTyrAspAlaLeuPheSerG : 195 !|||!!!:!!|||.!! !!!!! ! ! !:!! !! !||| !|||||||||| eValThrLeuIlePheLeuThrSerAlaIleIleGlySerAspAsnLeuPheSerG 3174434 : TGTAACTCTGATATTCCTTACTTCTGCTATTATCGGTTCTGACAATCTATTCAGCG : 3174490 196 : lyLeuMetPheCysIleTyrSerGlnLeuGluIleLeuGlyLeuArgLeuGlnAsn : 213 |||||:!!.!! !||||||!!!|||!!!||||||||| !! !||||||:!!!:! lyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysSer 3174491 : GACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGAGC : 3174544 214 : ValValLysAsnGlyLysAspThrAlaArgGluCysAlaArgHisHisAsnPheLe : 232 :!! ! :!! !!:!! !!:!!|||!:!:!!|||||| !|||||| !! !:! IleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrArgIl 3174545 : ATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGCAT : 3174601 233 : uTyr : 233 !||| eTyr 3174602 : ATAC : 3174606 vulgar: Lalb_14666 158 233 . KQ414646.1 3174378 3174606 + 127 M 8 24 G 0 3 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174379 3174606 127 + . gene_id 6 ; sequence Lalb_14666 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174379 3174606 . + . KQ414646.1 exonerate:protein2genome:local exon 3174379 3174606 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3174379 3174606 127 + . alignment_id 6 ; Query Lalb_14666 ; Align 3174379 159 24 ; Align 3174406 167 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14666 [mRNA] [translate_table: standard] Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 201 Query range: 136 -> 233 Target range: 1946867 -> 1946576 137 : MetIleLeuLeuThrThrLeuIleThrAsnGlyLysAsnLysMetLeuAlaTyrAr : 155 .!.|||! !:!!! !:!!|||:!:! !:!! !!..|||!:!! ||| !!:!|| PheIleTyrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheAr 1946867 : TTTATATACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCG : 1946813 156 : gLeuTrpIleProPheAspTyrSerAlaProValValTyrAlaIleIlePheAlaL : 174 | !|||||||||!:!||||||||| !! !! !:!!!:! !:!!! !|||!.!! gAlaTrpIleProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValH 1946812 : AGCATGGATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCC : 1946756 175 : euGlnAlaValSerValIleIleSerSerLeuMetAsnValThrTyrAspAlaLeu : 192 !||||||:!!:!!!.!! |||!!!!!! ! !!:!|||||| |||:!!||| isGlnAlaIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeu 1946755 : ATCAAGCTATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTA : 1946702 193 : PheSerGlyLeuMetPheCysIleTyrSerGlnLeuGluIleLeuGlyLeuArgLe : 211 !:!!!!||||||:!!.!! !||||||!!!|||!!!|||||||||! !! !||||| TyrThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLe 1946701 : TACACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCT : 1946645 212 : uGlnAsnValValLysAsnGlyLysAspThrAlaArgGluCysAlaArgHisHisA : 230 |::!|||||| !! .!. ! ! |||:!!!.!!:!:!!||||||!:!||||||: uArgAsnValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisA 1946644 : AAGGAACGTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACG : 1946588 231 : snPheLeuTyr : 233 !! !:!!||| spArgIleTyr 1946587 : ATCGTATATAC : 1946577 vulgar: Lalb_14666 136 233 . KQ414661.1 1946867 1946576 - 201 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946577 1946867 201 - . gene_id 1 ; sequence Lalb_14666 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946577 1946867 . - . KQ414661.1 exonerate:protein2genome:local exon 1946577 1946867 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1946577 1946867 201 - . alignment_id 1 ; Query Lalb_14666 ; Align 1946868 137 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14664 [mRNA] [translate_table: standard] Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 551 Query range: 0 -> 287 Target range: 1947328 -> 1946035 1 : ProAspSerTrpThrSerProSerLysArgIleLeuTyrSerThrTyrSerAlaPh : 19 ||| !!|||||||||!!!|||! !:!!||| !||||||!:!! !|||.!!!..|| ProHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPh 1947328 : CCCCATTCGTGGACAACACCGTTCGAAAGGTCTTTGTACAATATCTACGGGGtgtt : 1947274 20 : eIleTrpPheValMetTyrTrpTrpThrValSerGlnIleLeuAspLeuIleIleG : 38 | :::...:::::: ! ! ..!:!!|||||||||||||||:!! |||. eSerPheLeuLeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIleA 1947273 : ctcctttcttcttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCA : 1947217 39 : lnValLysThrGlnAspGluPheThrAspIlePheTyrAlaThrMetAlaAsnCys : 56 !.|||:!!!:!||||||!!:|||!::||| ||| ...||| !.! ! ! snValGluSerGlnAspAspPheSerAspAsnPheSerValThrAlaValValPhe 1947216 : ACGTGGAGAGCCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTT : 1947163 57 : CysIleCysAlaLysPheThrAsnValLeuLeuThrArgThrTyrIleAlaAsnMe : 75 !! !! !|||.!!:!!! !:!!|||:!! !||| ! !!.!! ! !:! LeuThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLe 1947162 : CTCACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCT : 1947106 76 : tIleAspArgIleGluLysGluProPheAlaSerLeuAsnValGluGluGluGluI : 94 !||||||! !:!!:!!!!.:!!||||||:!! !!:!!:!!..!||||||.!.|||| uIleAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluI 1947105 : GATCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGA : 1947049 95 : leArgThrArgPheAspLysLeuAla{Ar} >>>> Target Intron 1 >>> : 103 |||||.!!!:!|||!!:|||:!!.!!{..} 107 bp leArgAlaLysPheGluLysIleThr{Gl}++ 1947048 : TTAGAGCGAAATTCGAGAAGATCACC{GA}gt........................ : 1947018 104 : > {g}ArgAsnAlaValThrTyrThrIleIleIleSerCysTyrIleLeuProTh : 120 {!} !!|||.!!:!! !||| !! :::::: !!! !! ++{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIl 1947017 : .ag{A}TGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTAT : 1946864 121 : rCysAlaMetGlyLeuPheValGlyPheArgAspHisLysLeuLeuSerArgAlaT : 139 !! !!.!! ..!|||!!.:!!! !|||!!!:!!...||||||:!!! !||||||| eTyrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaT 1946863 : ATACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCAT : 1946807 140 : rpLeuProTyrAspTyrSerSerAsnValSerPheSerThrThrLeuIleHisGln : 157 ||:!!||||||||||||||| !! !! !|||! ! !|||!!!:!!|||||| rpIleProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGln 1946806 : GGATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAA : 1946753 158 : ValGlyAlaGlnValTyrAlaGlyCysIleThrThrGlySerAspCysLeuPheAs : 176 !.! !||| !..! ..! !! ! !:!..! ! !|||! !|||!:!!. AlaIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrTh 1946752 : GCTATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACAC : 1946696 177 : nGlyPheLeuMetHisThrTyrCysHisPheGluIleLeuAsnHisArgLeuLysM : 195 !|||!!.|||!!::!!! !||||||!!.||||||||||||.!.|||||||||!:!! rGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgA 1946695 : TGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGA : 1946639 196 : etIleGluAlaAspLysLysTyrThrLeuLysArgCysThrTyrLeuHisAspTyr : 213 :!!:!!.!!!!::!! ! !!:!!:!!|||!:!|||.!! ! ! !|||||| ! snValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArg 1946638 : ACGTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGT : 1946585 214 : IleTyr{Th} >>>> Target Intron 2 >>>> {r}TyrAlaThrThrVa : 221 ||||||{ } 325 bp {!}!:!:!!! !! !|| IleTyr{Gl}++ ++{n}PheSerLysLysVa 1946584 : ATATAC{CA}gt.........................ag{A}TTTTCGAAAAAGGT : 1946236 222 : lAsnArgArgPheLysIleIleIleMetIleGlnSerLeuValSerIleValThrV : 240 ||||..!..!||||||:!:|||:!:!!: !|||! !! !:!!|||!!: !..!: lAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValI 1946235 : GAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGA : 1946179 241 : alCysCysThrLeuTyrGlnLeuThrGlnValHisLeuGlySerArgPheIleGlu : 258 !!|||! !!.!||||||!:!:!!||||||:!! ! :!!! ::::::|||:::||| leCysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGlu 1946178 : TCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaa : 1946125 259 : ValAlaLeuTyrLeuThrAsnThrLeuIleGlnIlePheTyrTyrCysTrpTyrGl : 277 ::: !||||||! ! ! !|||:!!! |||||||||||||||||||||||||| IleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGl 1946124 : atcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGG : 1946068 278 : yAsnGluIleLysLeuLysValGlnSerCys : 287 |||||||:!:||| !||||||.!. !||| yAsnGluValLysAspLysValAspHisCys 1946067 : CAACGAAGTGAAAGATAAGGTTGATCATTGT : 1946036 vulgar: Lalb_14664 0 287 . KQ414661.1 1947328 1946035 - 551 M 102 306 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 112 336 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946036 1947328 551 - . gene_id 1 ; sequence Lalb_14664 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1947021 1947328 . - . KQ414661.1 exonerate:protein2genome:local exon 1947021 1947328 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1947019 1947020 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946914 1947020 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1946914 1946915 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946575 1946913 . - . KQ414661.1 exonerate:protein2genome:local exon 1946575 1946913 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946573 1946574 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946250 1946574 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1946250 1946251 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946036 1946249 . - . KQ414661.1 exonerate:protein2genome:local exon 1946036 1946249 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1946036 1947328 551 - . alignment_id 1 ; Query Lalb_14664 ; Align 1947329 1 306 ; Align 1946913 104 336 ; Align 1946249 217 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14662 [mRNA] [translate_table: standard] Target: KQ414667.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold102, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 133 Query range: 286 -> 334 Target range: 801758 -> 801463 287 : GlyLysMetPheArgThrAspLeuGlnValValMetIleArgSerArgValProCysC : 306 |||!.. ||| ! !..!||||||:!!:!!|||!!:|||||||||:!!|||||| GlySerArgPheSerGlnSerLeuGlnIleMetMetMetArgSerArgIleProCysL 801758 : GGTAGTCGTTTCTCTCAGAGTCTTCAGATCATGATGATGCGCTCGAGGATACCATGCA : 801701 307 : ysLeuThrAlaSerGlyPhePheIleValSerLeuGluThrTyrThrLys >>>> T : 323 :!!||||||:!! !|||!:!! !:!!|||||||||!:!!:!:!!||| ysIleThrAlaAlaLysPheTyrSerMetSerLeuGluSerPheSerLys++ 801700 : AGATAACCGCCGCTAAATTCTACAGCATGTCCTTGGAGAGCTTCTCGAAGgt...... : 801648 324 : arget Intron 1 >>>> ValLeuSerThrAlaAlaSerTyrPheThrLeuLeu : 334 151 bp ||||||||||||:!! !||||||||||||:!!||| ++ValLeuSerThrSerPheSerTyrPheThrValLeu 801647 : ...................agGTACTCAGCACGTCTTTCTCCTACTTCACGGTCCTC : 801464 vulgar: Lalb_14662 286 334 . KQ414667.1 801758 801463 - 133 M 36 108 5 0 2 I 0 147 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414667.1 exonerate:protein2genome:local gene 801464 801758 133 - . gene_id 1 ; sequence Lalb_14662 ; gene_orientation + KQ414667.1 exonerate:protein2genome:local cds 801651 801758 . - . KQ414667.1 exonerate:protein2genome:local exon 801651 801758 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 801649 801650 . - . intron_id 1 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801500 801650 . - . intron_id 1 KQ414667.1 exonerate:protein2genome:local splice3 801500 801501 . - . intron_id 0 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801464 801499 . - . KQ414667.1 exonerate:protein2genome:local exon 801464 801499 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local similarity 801464 801758 133 - . alignment_id 1 ; Query Lalb_14662 ; Align 801759 287 108 ; Align 801500 323 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14643 [mRNA] [translate_table: standard] Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 318 -> 363 Target range: 358648 -> 358783 319 : TyrAsnSerAlaTrpTyrArgIleProProSerSerGlnLysMetLeuLeuLeuValL : 338 |||!:!|||!.!||||||! ! ! !! ! !!:!!||||||! ||||||! !:!!: TyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuLeuTyrIleM 358649 : TACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGTTATACATCA : 358706 339 : euLeuAsnSerLeuAsnGlyValGlnIleSerPheAlaGlyLeuPheIleProSerTy : 357 !!! !:!!|||:!!.!.! ! !.!..!!|||.!!!.!|||||||||:!:|||||||| etGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheValProSerTy 358707 : TGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGTGCCGAGTTA : 358763 358 : rGluGlyLeuSerThrVal : 363 |:!!|||!!!||||||||| rGlnGlyPheSerThrVal 358764 : CCAAGGATTTTCTACGGTA : 358783 vulgar: Lalb_14643 318 363 . KQ414693.1 358648 358783 + 111 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358649 358783 111 + . gene_id 1 ; sequence Lalb_14643 ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 358649 358783 . + . KQ414693.1 exonerate:protein2genome:local exon 358649 358783 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358649 358783 111 + . alignment_id 1 ; Query Lalb_14643 ; Align 358649 319 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14643 [mRNA] [translate_table: standard] Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 46 -> 101 Target range: 358636 -> 358801 47 : SerThrGluSerTyrAsnSerValTrpTyrLeuIleProProGluSerGlnLysMetL : 66 ||| ! ! !!!|||!:!|||! !|||||| ! ! !! ! :!!||||||! | SerLeuTyrArgTyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrL 358637 : TCACTTTATAGGTACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACAC : 358694 67 : euLeuLeuValLeuValLysSerLeuAsnGlyThrLysIleAsnIleAlaGlyLeuPh : 85 |||||! !:!!:!! ! ! |||:!!.!.! ! !!!..!!:::|||!.!|||||||| euLeuTyrIleMetGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPh 358695 : TGTTATACATCATGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTT : 358751 86 : eValProCysTyrGluGlyPheSerThrValLysSerPheMetArgSer : 101 ||||||| !!|||:!!|||||||||||||||! !..!! !!!:!.!||| eValProSerTyrGlnGlyPheSerThrValThrAspSerIleAsnSer 358752 : TGTGCCGAGTTACCAAGGATTTTCTACGGTAACAGATTCTATCAATagt : 358801 vulgar: Lalb_14643 46 101 . KQ414693.1 358636 358801 + 110 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358637 358801 110 + . gene_id 2 ; sequence Lalb_14643 ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 358637 358801 . + . KQ414693.1 exonerate:protein2genome:local exon 358637 358801 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358637 358801 110 + . alignment_id 2 ; Query Lalb_14643 ; Align 358637 47 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14674 [mRNA] [translate_table: standard] Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 142 -> 223 Target range: 358236 -> 358783 143 : IleValValProIleLeuValThrLeuIleHisLeuLeuIleMetPheLeuAsnAsnT : 162 :!::!!:!! !:!:! !:!!! !||| !!!! ! !:!!||||||!.!|||: LeuIleLeuGluValSerMetIleLeuAlaCysPheAlaTyrLeuPheLeuThrAsnH 358237 : CTGATCCTAGAAGTGTCTATGATTCTCGCGTGCTTCGCGTACTTGTTTCTGACCAATC : 358294 163 : yrSerGlyGlnSerValIleAspSerSerSerGlnIlePheIleGlu{Se} >>>> : 178 !!! !||||||!!!:!!!!:||||||||||||:!!:!!.!! !|||{:!} isMetGlyGlnThrIleMetAspSerSerSerLysLeuLeuGlyGlu{Al}++ 358295 : ACATGGGACAAACGATCATGGACAGTAGCTCGAAACTTCTTGGCGAA{GC}gt..... : 358346 179 : Target Intron 1 >>>> {r}TyrAsnSerValTrpTyrLeuIleProProGlu : 189 304 bp {!}|||!:!|||! !|||||| ! ! !! ! ++{a}TyrSerSerGlyTrpTyrThrAlaSerValPro 358347 : ....................ag{G}TACAGCTCTGGATGGTATACTGCATCAGTGCCT : 358679 190 : SerGlnLysMetLeuLeuLeuValLeuValAsnSerAlaLysAlaValLysIleAsnL : 209 :!!||||||! ||||||! !:!!:!! !:!!||| !:!!! ! !!!..!!:::: AlaGlnLysThrLeuLeuTyrIleMetGlnHisSerIleGlnAspTyrAsnPheSerI 358680 : GCACAAAAAACACTGTTATACATCATGCAACACTCCATACAAGATTACAACTTCTCGA : 358739 210 : euAlaGlyLeuPheIleProSerTyrGluGlyPheSerMetVal : 223 !!!.!|||||||||:!:|||||||||:!!|||||||||! !||| leGlyGlyLeuPheValProSerTyrGlnGlyPheSerThrVal 358740 : TCGGAGGTCTGTTTGTGCCGAGTTACCAAGGATTTTCTACGGTA : 358783 vulgar: Lalb_14674 142 223 . KQ414693.1 358236 358783 + 155 M 35 105 S 0 2 5 0 2 I 0 300 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358237 358783 155 + . gene_id 1 ; sequence Lalb_14674 ; gene_orientation + KQ414693.1 exonerate:protein2genome:local cds 358237 358343 . + . KQ414693.1 exonerate:protein2genome:local exon 358237 358343 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local splice5 358344 358345 . + . intron_id 1 ; splice_site "GT" KQ414693.1 exonerate:protein2genome:local intron 358344 358647 . + . intron_id 1 KQ414693.1 exonerate:protein2genome:local splice3 358646 358647 . + . intron_id 0 ; splice_site "AG" KQ414693.1 exonerate:protein2genome:local cds 358648 358783 . + . KQ414693.1 exonerate:protein2genome:local exon 358648 358783 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358237 358783 155 + . alignment_id 1 ; Query Lalb_14674 ; Align 358237 143 105 ; Align 358649 179 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14645 [mRNA] [translate_table: standard] Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 321 -> 366 Target range: 358648 -> 358783 322 : TyrAsnSerMetTrpTyrThrMetProProLysSerGlnLysLeuLeuLeuLeuValL : 341 |||!:!||| ||||||||| !! ! :!!|||||| !||||||! !:!!: TyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuLeuTyrIleM 358649 : TACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGTTATACATCA : 358706 342 : euMetLysSerAlaThrGluValGlnPheAsnLeuAlaGlyLeuPheThrProCysTy : 360 !!... ! ||| ! !!!: !.!.|||::::!!!.!|||||||||..!||| !!|| etGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheValProSerTy 358707 : TGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGTGCCGAGTTA : 358763 361 : rGlnGlyPheThrThrVal : 366 ||||||||||:!!|||||| rGlnGlyPheSerThrVal 358764 : CCAAGGATTTTCTACGGTA : 358783 vulgar: Lalb_14645 321 366 . KQ414693.1 358648 358783 + 116 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358649 358783 116 + . gene_id 1 ; sequence Lalb_14645 ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 358649 358783 . + . KQ414693.1 exonerate:protein2genome:local exon 358649 358783 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358649 358783 116 + . alignment_id 1 ; Query Lalb_14645 ; Align 358649 322 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14655 [mRNA] [translate_table: standard] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 377 -> 434 Target range: 34405 -> 34659 378 : AlaTyrSerSerAsnTrpTyrAsnAlaProCysCysIleSerLysAsnIleLeuPheVal : 397 ||||||..!|||||||||||||||!.! !! ! !:!!||| !:!!||||||:!! AlaTyrGluSerAsnTrpTyrAsnValSerProProGluAlaLysCysLeuLeuPheIle 34406 : GCTTACGAGTCAAACTGGTACAACGTCTCACCTCCAGAAGCCAAGTGCCTTTTATTTATC : 34463 398 : LeuMetLysSerGlnCysProValHisLeuArgAlaGlyArgPhePheValValAsnLeu : 417 :!! !:!!!! !!|||:!! !|||! !||||||!:!||| !..! !!::!:!! MetHisArgThrAlaArgProLeuCysLeuThrAlaGlyLysPheSerThrPheSerMet 34464 : ATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCAGGAAAATTCAGTACCTTCTCCATG : 34523 418 : GluThrTyrMetSer >>>> Target Intron 1 >>>> IleLeuLysThrSerM : 428 |||! !!:!! !!! 83 bp ||||||||||||:!!| GluMetPheSerThr++ ++IleLeuLysThrAlaM 34524 : GAAATGTTCAGTACTgt.........................agattcTGAAAACAGCAA : 34639 429 : etSerTyrLeuSerValLeu : 434 ||.!!||||||||||||||| etGlyTyrLeuSerValLeu 34640 : TGGGATATCTTTCAGTTCTC : 34659 vulgar: Lalb_14655 377 434 . KQ414804.1 34405 34659 + 117 M 45 135 5 0 2 I 0 79 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34406 34659 117 + . gene_id 1 ; sequence Lalb_14655 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34406 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34406 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34659 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34659 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34406 34659 117 + . alignment_id 1 ; Query Lalb_14655 ; Align 34406 378 135 ; Align 34624 423 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14645 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 220 Query range: 5 -> 95 Target range: 445576 -> 445952 6 : MetLeuGluMetGluGlnLeuAspGluAlaValMetSerPheLeuValValMetThrH : 25 !!::!! !|||.!..!.! ! ||| !:!!:!:|||.!!:!!:!!|||! !.!| IleValThrMetAsnAspGlnLeuGluIleLeuLeuSerIleMetIleValSerAsnH 445577 : ATAGTGACAATGAATGATCAATTGGAGATACTGTTAAGTATCATGATCGTCAGTAATC : 445634 26 : isLeuValValMetPheLeuAsnAsnTyrSerGlyGlnGlnLeuAlaAsnIleSerVa : 44 ||:!!||| !!:!!|||!!!|||||||||:!!|||||| !||| !||| !|||! isIleValPheLeuPhePheAsnAsnTyrAlaGlyGlnLeuLeuIleAsnHisSerGl 445635 : ACATAGTGTTCCTGTTCTTTAACAACTACGCAGGACAGTTACTGATAAACCATAGCGA : 445691 45 : lAsnValPheAsnGlu{Th} >>>> Target Intron 1 >>>> {r}TyrAsn : 52 !.!.|||||| !|||{:!} 106 bp {!}|||||| uGluValPheValGlu{Se}++ ++{r}TyrAsn 445692 : AGAAGTCTTCGTTGAA{TC}gt.........................ag{A}TACAAT : 445821 53 : SerLysTrpTyrCysIleProProLysSerGlnLysLeuLeuLeuLeuValLeuMetL : 72 |||! |||||||||:!!||| !!..:!!|||||||||||||||!!!:!!:!!|||| SerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleMetMetL 445822 : TCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCATGATGA : 445881 73 : ysThrAlaAsnGluLeuLysPheAsnLeuAlaGlyLeuPheSerProCysTyrGluGl : 91 ||!:!.!!! ! !! !|||.!!||||||:!!|||:!!|||:!!|||||||||:!!|| ysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTyrLysGl 445882 : AAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTACAAAGG : 445938 92 : yPheThrMetVal : 95 ||||:!! !||| yPheSerSerVal 445939 : TTTTTCCTCGGTA : 445952 vulgar: Lalb_14645 5 95 . KQ414815.1 445576 445952 + 220 M 44 132 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445577 445952 220 + . gene_id 1 ; sequence Lalb_14645 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 445577 445710 . + . KQ414815.1 exonerate:protein2genome:local exon 445577 445710 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445711 445712 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445711 445816 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 445815 445816 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 445817 445952 . + . KQ414815.1 exonerate:protein2genome:local exon 445817 445952 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445577 445952 220 + . alignment_id 1 ; Query Lalb_14645 ; Align 445577 6 132 ; Align 445818 51 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14645 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 219 Query range: 5 -> 95 Target range: 441464 -> 441840 6 : MetLeuGluMetGluGlnLeuAspGluAlaValMetSerPheLeuValValMetThrH : 25 !!::!! !|||.!..!.! ! ||| !:!!:!:|||.!!:!!:!!|||! !.!| IleValThrMetAsnAspGlnLeuGluIleLeuLeuSerIleMetIleValSerAsnH 441465 : ATAGTGACAATGAATGATCAATTGGAGATACTGTTAAGTATCATGATCGTCAGTAATC : 441522 26 : isLeuValValMetPheLeuAsnAsnTyrSerGlyGlnGlnLeuAlaAsnIleSerVa : 44 ||:!!||| !!:!!|||!!!|||||||||:!!|||||| !||| !||| !|||! isIleValPheLeuPhePheAsnAsnTyrAlaGlyGlnLeuLeuIleAsnHisSerGl 441523 : ACATAGTGTTCCTGTTCTTTAACAACTACGCAGGACAGTTACTGATAAACCATAGCGA : 441579 45 : lAsnValPheAsnGlu{Th} >>>> Target Intron 1 >>>> {r}TyrAsn : 52 !.!.|||||| !|||{:!} 106 bp {!}|||||| uGluValPheValGlu{Se}++ ++{r}TyrAsn 441580 : AGAAGTCTTCGTTGAA{TC}gt.........................ag{A}TACAAT : 441709 53 : SerLysTrpTyrCysIleProProLysSerGlnLysLeuLeuLeuLeuValLeuMetL : 72 |||! |||||||||:!!||| !!..:!!|||||||||||||||!!!:!!:!!|||| SerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleMetMetL 441710 : TCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCATGATGA : 441769 73 : ysThrAlaAsnGluLeuLysPheAsnLeuAlaGlyLeuPheSerProCysTyrGluGl : 91 ||!:!.!!! ! !! !|||.!.||||||:!!|||:!!|||:!!|||||||||:!!|| ysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTyrLysGl 441770 : AAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTACAAAGG : 441826 92 : yPheThrMetVal : 95 ||||:!! !||| yPheSerSerVal 441827 : TTTTTCCTCGGTA : 441840 vulgar: Lalb_14645 5 95 . KQ414815.1 441464 441840 + 219 M 44 132 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441465 441840 219 + . gene_id 2 ; sequence Lalb_14645 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 441465 441598 . + . KQ414815.1 exonerate:protein2genome:local exon 441465 441598 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 441599 441600 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 441599 441704 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 441703 441704 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 441705 441840 . + . KQ414815.1 exonerate:protein2genome:local exon 441705 441840 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441465 441840 219 + . alignment_id 2 ; Query Lalb_14645 ; Align 441465 6 132 ; Align 441706 51 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14645 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 215 Query range: 284 -> 367 Target range: 445600 -> 445955 285 : GluThrLeuPheAlaIleLeuValValLeuThrHisLeuValValMetPheLeuAsnA : 304 |||! !|||!!.::!|||:!!:!!||| !!.!|||:!!||| !!:!!|||!!!|||| GluIleLeuLeuSerIleMetIleValSerAsnHisIleValPheLeuPhePheAsnA 445601 : GAGATACTGTTAAGTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACA : 445658 305 : snTyrSerGlyGlnGlnLeuAlaAsnIleSerValAsnValPheAsnGlu{Th} >> : 321 |||||:!!|||||| !||| !||| !|||! !.!.|||||| !|||{:!} snTyrAlaGlyGlnLeuLeuIleAsnHisSerGluGluValPheValGlu{Se}++ 445659 : ACTACGCAGGACAGTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA{TC}gt.. : 445713 322 : >> Target Intron 1 >>>> {r}TyrAsnSerMetTrpTyrThrMetProPro : 331 106 bp {!}|||||||||! |||||| !:!:||| ! ++{r}TyrAsnSerThrTrpTyrCysValProLeu 445714 : .......................ag{A}TACAATTCTACTTGGTATTGCGTTCCGTTA : 445845 332 : LysSerGlnLysLeuLeuLeuLeuValLeuMetLysSerAlaThrGluValGlnPheA : 351 !..:!!|||||||||||||||!!!:!!:!!|||||||||.!!! ! ! !:!!.!!| SerAlaGlnLysLeuLeuLeuPheIleMetMetLysSerThrIleProCysLysIleA 445846 : AGCGCGCAAAAGTTGTTATTGTTCATCATGATGAAAAGTACGATCCCATGTAAGATTA : 445905 352 : snLeuAlaGlyLeuPheThrProCysTyrGlnGlyPheThrThrValIle : 367 |||||:!!|||:!!|||.!!|||||||||:!!||||||:!!:!!|||||| snLeuSerGlyIlePheAlaProCysTyrLysGlyPheSerSerValIle 445906 : ATCTCTCCGGTATATTTGCTCCGTGTTACAAAGGTTTTTCCTCGGTAATT : 445955 vulgar: Lalb_14645 284 367 . KQ414815.1 445600 445955 + 215 M 36 108 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445601 445955 215 + . gene_id 3 ; sequence Lalb_14645 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 445601 445710 . + . KQ414815.1 exonerate:protein2genome:local exon 445601 445710 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445711 445712 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445711 445816 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 445815 445816 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 445817 445955 . + . KQ414815.1 exonerate:protein2genome:local exon 445817 445955 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445601 445955 215 + . alignment_id 3 ; Query Lalb_14645 ; Align 445601 285 108 ; Align 445818 322 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14645 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 214 Query range: 284 -> 367 Target range: 441488 -> 441843 285 : GluThrLeuPheAlaIleLeuValValLeuThrHisLeuValValMetPheLeuAsnA : 304 |||! !|||!!.::!|||:!!:!!||| !!.!|||:!!||| !!:!!|||!!!|||| GluIleLeuLeuSerIleMetIleValSerAsnHisIleValPheLeuPhePheAsnA 441489 : GAGATACTGTTAAGTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACA : 441546 305 : snTyrSerGlyGlnGlnLeuAlaAsnIleSerValAsnValPheAsnGlu{Th} >> : 321 |||||:!!|||||| !||| !||| !|||! !.!.|||||| !|||{:!} snTyrAlaGlyGlnLeuLeuIleAsnHisSerGluGluValPheValGlu{Se}++ 441547 : ACTACGCAGGACAGTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA{TC}gt.. : 441601 322 : >> Target Intron 1 >>>> {r}TyrAsnSerMetTrpTyrThrMetProPro : 331 106 bp {!}|||||||||! |||||| !:!:||| ! ++{r}TyrAsnSerThrTrpTyrCysValProLeu 441602 : .......................ag{A}TACAATTCTACTTGGTATTGCGTTCCGTTA : 441733 332 : LysSerGlnLysLeuLeuLeuLeuValLeuMetLysSerAlaThrGluValGlnPheA : 351 !..:!!|||||||||||||||!!!:!!:!!|||||||||.!!! ! ! !:!!.!.| SerAlaGlnLysLeuLeuLeuPheIleMetMetLysSerThrIleProCysLysMetA 441734 : AGCGCGCAGAAGTTGTTATTGTTCATCATGATGAAAAGTACGATCCCATGTAAGATGA : 441793 352 : snLeuAlaGlyLeuPheThrProCysTyrGlnGlyPheThrThrValIle : 367 |||||:!!|||:!!|||.!!|||||||||:!!||||||:!!:!!|||||| snLeuSerGlyIlePheAlaProCysTyrLysGlyPheSerSerValIle 441794 : ATCTCTCCGGTATATTTGCTCCGTGTTACAAAGGTTTTTCCTCGGTAATT : 441843 vulgar: Lalb_14645 284 367 . KQ414815.1 441488 441843 + 214 M 36 108 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441489 441843 214 + . gene_id 4 ; sequence Lalb_14645 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 441489 441598 . + . KQ414815.1 exonerate:protein2genome:local exon 441489 441598 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 441599 441600 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 441599 441704 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 441703 441704 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 441705 441843 . + . KQ414815.1 exonerate:protein2genome:local exon 441705 441843 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441489 441843 214 + . alignment_id 4 ; Query Lalb_14645 ; Align 441489 285 108 ; Align 441706 322 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14645 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 93 -> 216 Target range: 444107 -> 444820 94 : MetValLysAsnPheValGlnTyrLeuGlnAsnAspCysThrThrIleGlnSerProV : 113 ..!||||||::!.!! !!:!!! !:!!|||!..||| !|||:!!|||..! !! GlnValLysSerIlePheGluCysIleGlnThrAspValTyrThrLeuGlnAspSerA 444108 : CAGGTCAAGTCTATCTTTGAGTGTATACAGACAGATGTATATACGCTACAAGATTCGA : 444165 114 : alGluArgLysIleLeuAlaLysTyrMetGluLysThrArgHisIlePheLeuCysPh : 132 !|||! !|||||||||.!!||||||!!:!!: ! :!!!!!!..|||... || snGluMetLysIleLeuThrLysTyrIleAspAspSerSerArgIleIleThrIlePh 444166 : ACGAGATGAAGATACTAACGAAATATATCGATGATTCAAGTCGAATaatcacaatttt : 444222 133 : eLeu{G} >>>> Target Intron 1 >>>> {ly}ValSerIleValGlyIle : 140 ||||{ } 344 bp {!!}:!!!!!|||:!!! !! eLeu{T}++ -+{rp}IleThrIleIleValThr 444223 : ccta{t}gt.........................tg{GG}ATCACAATTATCGTGACG : 444590 141 : ThrPheValSerValArgIleIleIleProThrIleLeuArgSerLysTyrGlnLeuT : 160 |||!!.:!!! ! ! ! !!!: !! ! !:!!! ! !!:!!!.! !::!! ! ThrLeuLeuTyrProValSerMetAspLeuLeuValProLeuAsnAsnSerArgProA 444591 : ACATTATTATACCCAGTATCAATGGATCTGTTAGTACCTTTGAACAATTCCAGACCTC : 444650 161 : yrSerLeuGlnSerPheGlyPhePheTyrSerLysGlnThrArgGluSerAspTrpAl : 179 !! !||| ! !|||! !.!!.!! !|||!!.|||! !!:! ! ! !|||!:: rgTyrLeuGlyTyrPheValIleLeuProSerAsnGlnIleGlnTyrIleAspPheMe 444651 : GTTATCTTGGCTACTTTGTTATTCTTCCCTCTAATCAAATACAGTATATTGATTTTAT : 444707 180 : aSerIleHisLeuThrValThrSerAlaIleGlyLeuLeuThrIleAlaCysThrGlu : 198 !!!!.!!:!! !|||:!!..! !! !:!:||||||||||||:!!|||||||||||| tThrPheTyrGlyThrLeuValProPheValGlyLeuLeuThrValAlaCysThrGlu 444708 : GACATTTTATGGGACATTAGTTCCCTTTGTGGGATTATTAACTGTAGCATGCACGGAA : 444764 199 : GlySerLeuAlaValPheSerLeuTyrLeuCysGlyLeuPheGluIleValGly : 216 ..! !|||::!:!! !:!!:!!|||||||||.!!|||!:!:!!|||..!||| SerLeuLeuSerIleSerAlaMetTyrLeuCysSerLeuTyrLysIleThrGly 444765 : TCGCTTCTTAGTATTAGCGCAATGTATCTGTGCAGTTTATATAAGATTACTGGG : 444820 vulgar: Lalb_14645 93 216 . KQ414815.1 444107 444820 + 138 M 40 120 S 0 1 5 0 2 I 0 340 3 0 2 S 1 2 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 444108 444820 138 + . gene_id 5 ; sequence Lalb_14645 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 444108 444228 . + . KQ414815.1 exonerate:protein2genome:local exon 444108 444228 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 444229 444230 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 444229 444572 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 444571 444572 . + . intron_id 0 ; splice_site "TG" KQ414815.1 exonerate:protein2genome:local cds 444573 444820 . + . KQ414815.1 exonerate:protein2genome:local exon 444573 444820 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 444108 444820 138 + . alignment_id 5 ; Query Lalb_14645 ; Align 444108 94 120 ; Align 444575 135 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14645 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 93 -> 216 Target range: 439997 -> 440708 94 : MetValLysAsnPheValGlnTyrLeuGlnAsnAspCysThrThrIleGlnSerProV : 113 ..!|||||| !.!! !!:!!! !:!!|||!..||| !|||:!!|||..! !! GlnValLysPheIlePheGluCysIleGlnThrAspValTyrThrLeuGlnAspSerA 439998 : CAGGTCAAGTTTATCTTTGAGTGTATACAGACAGATGTATATACGCTACAAGATTCGA : 440055 114 : alGluArgLysIleLeuAlaLysTyrMetGluLysThrArgHisIlePheLeuCysPh : 132 !|||! !|||||||||.!!||||||!!:!!: ! :!!!!!!..|||... || snGluMetLysIleLeuThrLysTyrIleAspAspSerSerArgIleIleThrIlePh 440056 : ACGAGATGAAGATACTAACGAAATATATCGATGATTCAAGTCGAATaatcacaatttt : 440112 133 : eLeu{G} >>>> Target Intron 1 >>>> {ly}ValSerIleValGlyIle : 140 ||||{ } 342 bp {!!}:!!!!!|||..!! !! eLeu{T}++ -+{rp}IleThrIleThrValThr 440113 : ccta{t}gt.........................tg{GG}ATCACAATTACCGTGACG : 440478 141 : ThrPheValSerValArgIleIleIleProThrIleLeuArgSerLysTyrGlnLeuT : 160 |||!!.:!!! ! ! ! !!!: !! ! !:!!! ! !!:!|||! !::!! ! ThrLeuLeuTyrProValSerMetAspLeuLeuValProLeuAsnLysSerArgProA 440479 : ACATTATTATACCCAGTATCAATGGATCTGTTAGTACCATTGAACAAATCCAGACCTC : 440538 161 : yrSerLeuGlnSerPheGlyPhePheTyrSerLysGlnThrArgGluSerAspTrpAl : 179 !! !||| ||| ...... |||!!.|||! !!:! ! ! !|||!:: rgTyrLeuGlyTyrPhePheIleLeuProSerAsnGlnIleGlnTyrIleAspPheMe 440539 : GTTATCTTGGctacttttttattcttccctCTAATCAAATACAGTATATTGATTTTAT : 440595 180 : aSerIleHisLeuThrValThrSerAlaIleGlyLeuLeuThrIleAlaCysThrGlu : 198 !!!!.!!:!! !|||:!!..! !! !:!:||||||||||||:!!.!!||||||||| tThrPheTyrGlyThrLeuValProPheValGlyLeuLeuThrValThrCysThrGlu 440596 : GACATTTTATGGGACATTAGTTCCCTTTGTGGGATTATTAACTGTAACATGCACGGAA : 440652 199 : GlySerLeuAlaValPheSerLeuTyrLeuCysGlyLeuPheGluIleValGly : 216 ..! !|||::!:!!.!!:!!:!!|||:!! !!.!!|||!:!:!!|||..!||| SerLeuLeuSerIleIleAlaMetTyrValSerSerLeuTyrLysIleThrGly 440653 : TCGCTTCTTAGTATTATCGCAATGTATGTGAGCAGTTTATATAAGATTACTGGG : 440708 vulgar: Lalb_14645 93 216 . KQ414815.1 439997 440708 + 121 M 40 120 S 0 1 5 0 2 I 0 338 3 0 2 S 1 2 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439998 440708 121 + . gene_id 6 ; sequence Lalb_14645 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 439998 440118 . + . KQ414815.1 exonerate:protein2genome:local exon 439998 440118 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 440119 440120 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 440119 440460 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 440459 440460 . + . intron_id 0 ; splice_site "TG" KQ414815.1 exonerate:protein2genome:local cds 440461 440708 . + . KQ414815.1 exonerate:protein2genome:local exon 440461 440708 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 439998 440708 121 + . alignment_id 6 ; Query Lalb_14645 ; Align 439998 94 120 ; Align 440463 135 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14645 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 42 -> 97 Target range: 472680 -> 472845 43 : SerValAsnValPheAsnGluThrTyrAsnSerLysTrpTyrCysIleProProLysS : 62 ..!:!!...:!!.!!::! ! !|||||||||:!!||||||||| ||| ! !! AspLeuGlyIleLeuSerLeuArgTyrAsnSerGluTrpTyrCysSerProLeuProI 472681 : GATCTAGGAATCCTTTCTCTCAGGTATAATTCTGAATGGTATTGCTCGCCGTTGCCAA : 472738 63 : erGlnLysLeuLeuLeuLeuValLeuMetLysThrAlaAsnGluLeuLysPheAsnLe : 81 !||||||||||||! !!!!:!!:!!..! !! ! !||| ||| :: leGlnLysLeuLeuHisPheIleMetGlnGlyArgIleAsnLeuAsnIlePhePheMe 472739 : TACAAAAATTGCTACATTTTATCATGCAGGGAAGGATAAATctgaacatattttttat : 472795 82 : uAlaGlyLeuPheSerProCysTyrGluGlyPheThrMetValLysAsn : 97 : ||| !||| !|||! ||||||||| ! !|||!:!||| tTyrGlyThrPheValProSerMetGluGlyPheGlyAlaValArgAsn 472796 : gtacGGTACATTCGTACCTTCGATGGAAGGTTTTGGCGCGGTAAGGAAT : 472845 vulgar: Lalb_14645 42 97 . KQ414815.1 472680 472845 + 101 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 472681 472845 101 + . gene_id 7 ; sequence Lalb_14645 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 472681 472845 . + . KQ414815.1 exonerate:protein2genome:local exon 472681 472845 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 472681 472845 101 + . alignment_id 7 ; Query Lalb_14645 ; Align 472681 43 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14645 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 43 -> 99 Target range: 490179 -> 490347 44 : ValAsnValPheAsnGluThrTyrAsnSerLysTrpTyrCysIleProProLysSerG : 63 :!!|||:!!.!!|||..! ! !!!:! !!!.|||||| !||| ! ! !| LeuAsnIleLeuAsnArgCysAsnSerValAsnTrpTyrThrAlaProIleAlaIleG 490180 : CTTAACATACTTAATAGATGCAACAGCGTGAATTGGTACACGGCTCCAATTGCCATAC : 490237 64 : lnLysLeuLeuLeuLeuValLeuMetLysThrAlaAsnGluLeuLysPheAsnLeuAl : 82 ||||||||||||||:!!:!!:!!...!!.||| !....!.! !..!.!.!..||| lnLysLeuLeuLeuIleIleMetGlnAsnThrIleArgAsnSerSerIleThrLeuPh 490238 : AAAAATTGCTGTTGATCATTATGCAAAATACTATACGAAATTCTTCAATAACACTCTT : 490294 83 : aGlyLeuPheSerProCysTyrGluGlyPheThrMetValLysAsnPheVal : 99 !|||:!!!:!! ! !!! !!:!!!:|||||| !||||||!!.||| ::: eGlyMetTyrIleSerSerPheAspGlyPhePheMetValAsnAsnThrIle 490295 : CGGAATGTATATATCGTCTTTCGATGGTTTCTTCATGGTAAATAACAcgatt : 490347 vulgar: Lalb_14645 43 99 . KQ414815.1 490179 490347 + 100 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 490180 490347 100 + . gene_id 8 ; sequence Lalb_14645 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 490180 490347 . + . KQ414815.1 exonerate:protein2genome:local exon 490180 490347 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 490180 490347 100 + . alignment_id 8 ; Query Lalb_14645 ; Align 490180 44 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14643 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 187 Query range: 281 -> 364 Target range: 445600 -> 445955 282 : GluIlePheValCysMetLeuValThrSerValHisValLeuIleIlePheLeuAsnA : 301 ||||||.!.:!! !!!!::!!:!!..!||| !|||:!!:!!.!!:!:|||!!!|||| GluIleLeuLeuSerIleMetIleValSerAsnHisIleValPheLeuPhePheAsnA 445601 : GAGATACTGTTAAGTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACA : 445658 302 : snTyrSerGlyGlnAlaValValAsnThrSerSerGlnIlePheTyrAsp{Th} >> : 318 |||||:!!|||||| !:!!:!!||| !|||..!:!!:!!||| !!!:{:!} snTyrAlaGlyGlnLeuLeuIleAsnHisSerGluGluValPheValGlu{Se}++ 445659 : ACTACGCAGGACAGTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA{TC}gt.. : 445713 319 : >> Target Intron 1 >>>> {r}TyrAsnSerAlaTrpTyrArgIleProPro : 328 106 bp {!}|||||||||.!!|||||| !!:!!||| ! ++{r}TyrAsnSerThrTrpTyrCysValProLeu 445714 : .......................ag{A}TACAATTCTACTTGGTATTGCGTTCCGTTA : 445845 329 : SerSerGlnLysMetLeuLeuLeuValLeuLeuAsnSerLeuAsnGlyValGlnIleS : 348 |||:!!||||||:!!||||||!!!:!!:!!:!!!!.||| !! ! ! !:!!|||! SerAlaGlnLysLeuLeuLeuPheIleMetMetLysSerThrIleProCysLysIleA 445846 : AGCGCGCAAAAGTTGTTATTGTTCATCATGATGAAAAGTACGATCCCATGTAAGATTA : 445905 349 : erPheAlaGlyLeuPheIleProSerTyrGluGlyLeuSerThrValIle : 364 :!.!!:!!|||:!!||| !|||!!!|||:!!|||!!!|||:!!|||||| snLeuSerGlyIlePheAlaProCysTyrLysGlyPheSerSerValIle 445906 : ATCTCTCCGGTATATTTGCTCCGTGTTACAAAGGTTTTTCCTCGGTAATT : 445955 vulgar: Lalb_14643 281 364 . KQ414815.1 445600 445955 + 187 M 36 108 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445601 445955 187 + . gene_id 1 ; sequence Lalb_14643 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 445601 445710 . + . KQ414815.1 exonerate:protein2genome:local exon 445601 445710 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445711 445712 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445711 445816 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 445815 445816 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 445817 445955 . + . KQ414815.1 exonerate:protein2genome:local exon 445817 445955 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445601 445955 187 + . alignment_id 1 ; Query Lalb_14643 ; Align 445601 282 108 ; Align 445818 319 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14643 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 281 -> 364 Target range: 441488 -> 441843 282 : GluIlePheValCysMetLeuValThrSerValHisValLeuIleIlePheLeuAsnA : 301 ||||||.!.:!! !!!!::!!:!!..!||| !|||:!!:!!.!!:!:|||!!!|||| GluIleLeuLeuSerIleMetIleValSerAsnHisIleValPheLeuPhePheAsnA 441489 : GAGATACTGTTAAGTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACA : 441546 302 : snTyrSerGlyGlnAlaValValAsnThrSerSerGlnIlePheTyrAsp{Th} >> : 318 |||||:!!|||||| !:!!:!!||| !|||..!:!!:!!||| !!!:{:!} snTyrAlaGlyGlnLeuLeuIleAsnHisSerGluGluValPheValGlu{Se}++ 441547 : ACTACGCAGGACAGTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA{TC}gt.. : 441601 319 : >> Target Intron 1 >>>> {r}TyrAsnSerAlaTrpTyrArgIleProPro : 328 106 bp {!}|||||||||.!!|||||| !!:!!||| ! ++{r}TyrAsnSerThrTrpTyrCysValProLeu 441602 : .......................ag{A}TACAATTCTACTTGGTATTGCGTTCCGTTA : 441733 329 : SerSerGlnLysMetLeuLeuLeuValLeuLeuAsnSerLeuAsnGlyValGlnIleS : 348 |||:!!||||||:!!||||||!!!:!!:!!:!!!!.||| !! ! ! !:!!!!:! SerAlaGlnLysLeuLeuLeuPheIleMetMetLysSerThrIleProCysLysMetA 441734 : AGCGCGCAGAAGTTGTTATTGTTCATCATGATGAAAAGTACGATCCCATGTAAGATGA : 441793 349 : erPheAlaGlyLeuPheIleProSerTyrGluGlyLeuSerThrValIle : 364 :!.!!:!!|||:!!||| !|||!!!|||:!!|||!!!|||:!!|||||| snLeuSerGlyIlePheAlaProCysTyrLysGlyPheSerSerValIle 441794 : ATCTCTCCGGTATATTTGCTCCGTGTTACAAAGGTTTTTCCTCGGTAATT : 441843 vulgar: Lalb_14643 281 364 . KQ414815.1 441488 441843 + 183 M 36 108 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441489 441843 183 + . gene_id 2 ; sequence Lalb_14643 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 441489 441598 . + . KQ414815.1 exonerate:protein2genome:local exon 441489 441598 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 441599 441600 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 441599 441704 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 441703 441704 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 441705 441843 . + . KQ414815.1 exonerate:protein2genome:local exon 441705 441843 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441489 441843 183 + . alignment_id 2 ; Query Lalb_14643 ; Align 441489 282 108 ; Align 441706 319 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14643 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 50 -> 95 Target range: 445817 -> 445952 51 : TyrAsnSerValTrpTyrLeuIleProProGluSerGlnLysMetLeuLeuLeuValL : 70 |||||||||..!||||||! !:!!||| !...:!!||||||:!!||||||!!!:!!: TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 71 : euValLysSerLeuAsnGlyThrLysIleAsnIleAlaGlyLeuPheValProCysTy : 89 !!:!!|||||| !! ! ! !|||||||||:!!:!!|||:!!|||!.!|||||||| etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 90 : rGluGlyPheSerThrVal : 95 |:!!|||||||||:!!||| rLysGlyPheSerSerVal 445933 : CAAAGGTTTTTCCTCGGTA : 445952 vulgar: Lalb_14643 50 95 . KQ414815.1 445817 445952 + 147 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 445952 147 + . gene_id 3 ; sequence Lalb_14643 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445818 445952 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445952 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 445952 147 + . alignment_id 3 ; Query Lalb_14643 ; Align 445818 51 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14643 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 50 -> 95 Target range: 441705 -> 441840 51 : TyrAsnSerValTrpTyrLeuIleProProGluSerGlnLysMetLeuLeuLeuValL : 70 |||||||||..!||||||! !:!!||| !...:!!||||||:!!||||||!!!:!!: TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 71 : euValLysSerLeuAsnGlyThrLysIleAsnIleAlaGlyLeuPheValProCysTy : 89 !!:!!|||||| !! ! ! !|||!!:|||:!!:!!|||:!!|||!.!|||||||| etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 90 : rGluGlyPheSerThrVal : 95 |:!!|||||||||:!!||| rLysGlyPheSerSerVal 441821 : CAAAGGTTTTTCCTCGGTA : 441840 vulgar: Lalb_14643 50 95 . KQ414815.1 441705 441840 + 144 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441840 144 + . gene_id 4 ; sequence Lalb_14643 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441706 441840 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441840 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441840 144 + . alignment_id 4 ; Query Lalb_14643 ; Align 441706 51 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14643 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 318 -> 363 Target range: 487029 -> 487164 319 : TyrAsnSerAlaTrpTyrArgIleProProSerSerGlnLysMetLeuLeuLeuValL : 338 |||||||||! !||||||||||||||| !:!!...||||||:::|||||||||:!!: TyrAsnSerGluTrpTyrArgIleProValAlaGluGlnLysValLeuLeuLeuLeuM 487030 : TACAATTCAGAATGGTACAGAATCCCTGTAGCGGAacaaaaagtattattacTCCTGA : 487087 339 : euLeuAsnSerLeuAsnGlyValGlnIleSerPheAlaGlyLeuPheIleProSerTy : 357 !!! !|||||||||!!.! !! !..!||| !.!!!.!|||:!!.!! ! !!|||!: etGlnAsnSerLeuLysAspAspMetIleLeuLeuGlyGlyIleIleProAlaSerPh 487088 : TGCAAAATAGTTTAAAAGATGATATGATCCTACTTGGCGGAATTATTCCTGCATCTTT : 487144 358 : rGluGlyLeuSerThrVal : 363 !:!!|||!!!||| !||| eGlnGlyPheSerLeuVal 487145 : CCAGGGATTTTCACTGGTA : 487164 vulgar: Lalb_14643 318 363 . KQ414815.1 487029 487164 + 111 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 487030 487164 111 + . gene_id 5 ; sequence Lalb_14643 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 487030 487164 . + . KQ414815.1 exonerate:protein2genome:local exon 487030 487164 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 487030 487164 111 + . alignment_id 5 ; Query Lalb_14643 ; Align 487030 319 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14674 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 214 Query range: 141 -> 234 Target range: 445600 -> 445985 142 : GluIleValValProIleLeuValThrLeuIleHisLeuLeuIleMetPheLeuAsnA : 161 ||||||:!!:!! !|||:!!:!!..! !! !|||:!!:!!.!!:!!|||!!!|||| GluIleLeuLeuSerIleMetIleValSerAsnHisIleValPheLeuPhePheAsnA 445601 : GAGATACTGTTAAGTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACA : 445658 162 : snTyrSerGlyGlnSerValIleAspSerSerSerGlnIlePheIleGlu{Se} >> : 178 |||||:!!||||||! !:!!|||:!! !|||..!:!!:!!|||:!!|||{||} snTyrAlaGlyGlnLeuLeuIleAsnHisSerGluGluValPheValGlu{Se}++ 445659 : ACTACGCAGGACAGTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA{TC}gt.. : 445713 179 : >> Target Intron 1 >>>> {r}TyrAsnSerValTrpTyrLeuIleProPro : 188 106 bp {|}|||||||||..!||||||! !:!!||| ! ++{r}TyrAsnSerThrTrpTyrCysValProLeu 445714 : .......................ag{A}TACAATTCTACTTGGTATTGCGTTCCGTTA : 445845 189 : GluSerGlnLysMetLeuLeuLeuValLeuValAsnSerAlaLysAlaValLysIleA : 208 ...:!!||||||:!!||||||!!!:!!:!!:!!!!.|||.!!! !! !||||||| SerAlaGlnLysLeuLeuLeuPheIleMetMetLysSerThrIleProCysLysIleA 445846 : AGCGCGCAAAAGTTGTTATTGTTCATCATGATGAAAAGTACGATCCCATGTAAGATTA : 445905 209 : snLeuAlaGlyLeuPheIleProSerTyrGluGlyPheSerMetValIleLeuLeuIl : 227 |||||:!!|||:!!||| !|||!!!|||:!!||||||||| !||||||! !|||:! snLeuSerGlyIlePheAlaProCysTyrLysGlyPheSerSerValIleCysLeuLe 445906 : ATCTCTCCGGTATATTTGCTCCGTGTTACAAAGGTTTTTCCTCGGTAATTTGTCTTTT : 445962 228 : eCysLeuCysSerValPheAsn : 234 : !!! !...:::...||| uLeuPheHisGlnLeuIleAsn 445963 : GCTATTTCATCagttaattaac : 445985 vulgar: Lalb_14674 141 234 . KQ414815.1 445600 445985 + 214 M 36 108 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445601 445985 214 + . gene_id 1 ; sequence Lalb_14674 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 445601 445710 . + . KQ414815.1 exonerate:protein2genome:local exon 445601 445710 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445711 445712 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445711 445816 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 445815 445816 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 445817 445985 . + . KQ414815.1 exonerate:protein2genome:local exon 445817 445985 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445601 445985 214 + . alignment_id 1 ; Query Lalb_14674 ; Align 445601 142 108 ; Align 445818 179 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14674 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 210 Query range: 141 -> 234 Target range: 441488 -> 441873 142 : GluIleValValProIleLeuValThrLeuIleHisLeuLeuIleMetPheLeuAsnA : 161 ||||||:!!:!! !|||:!!:!!..! !! !|||:!!:!!.!!:!!|||!!!|||| GluIleLeuLeuSerIleMetIleValSerAsnHisIleValPheLeuPhePheAsnA 441489 : GAGATACTGTTAAGTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACA : 441546 162 : snTyrSerGlyGlnSerValIleAspSerSerSerGlnIlePheIleGlu{Se} >> : 178 |||||:!!||||||! !:!!|||:!! !|||..!:!!:!!|||:!!|||{||} snTyrAlaGlyGlnLeuLeuIleAsnHisSerGluGluValPheValGlu{Se}++ 441547 : ACTACGCAGGACAGTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA{TC}gt.. : 441601 179 : >> Target Intron 1 >>>> {r}TyrAsnSerValTrpTyrLeuIleProPro : 188 106 bp {|}|||||||||..!||||||! !:!!||| ! ++{r}TyrAsnSerThrTrpTyrCysValProLeu 441602 : .......................ag{A}TACAATTCTACTTGGTATTGCGTTCCGTTA : 441733 189 : GluSerGlnLysMetLeuLeuLeuValLeuValAsnSerAlaLysAlaValLysIleA : 208 ...:!!||||||:!!||||||!!!:!!:!!:!!!!.|||.!!! !! !|||!!:| SerAlaGlnLysLeuLeuLeuPheIleMetMetLysSerThrIleProCysLysMetA 441734 : AGCGCGCAGAAGTTGTTATTGTTCATCATGATGAAAAGTACGATCCCATGTAAGATGA : 441793 209 : snLeuAlaGlyLeuPheIleProSerTyrGluGlyPheSerMetValIleLeuLeuIl : 227 |||||:!!|||:!!||| !|||!!!|||:!!||||||||| !||||||! !|||:! snLeuSerGlyIlePheAlaProCysTyrLysGlyPheSerSerValIleCysLeuLe 441794 : ATCTCTCCGGTATATTTGCTCCGTGTTACAAAGGTTTTTCCTCGGTAATTTGTCTTTT : 441850 228 : eCysLeuCysSerValPheAsn : 234 : !!! !...:::...||| uLeuPheHisGlnLeuIleAsn 441851 : GCTATTTCATCagttaattaac : 441873 vulgar: Lalb_14674 141 234 . KQ414815.1 441488 441873 + 210 M 36 108 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441489 441873 210 + . gene_id 2 ; sequence Lalb_14674 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 441489 441598 . + . KQ414815.1 exonerate:protein2genome:local exon 441489 441598 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 441599 441600 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 441599 441704 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 441703 441704 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 441705 441873 . + . KQ414815.1 exonerate:protein2genome:local exon 441705 441873 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441489 441873 210 + . alignment_id 2 ; Query Lalb_14674 ; Align 441489 142 108 ; Align 441706 179 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14674 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 175 -> 223 Target range: 487020 -> 487164 176 : IleGluSerTyrAsnSerValTrpTyrLeuIleProProGluSerGlnLysMetLeuL : 195 |||.!.!!!|||||||||! !|||||| !|||||| !! !...||||||:::|||| IleHisArgTyrAsnSerGluTrpTyrArgIleProValAlaGluGlnLysValLeuL 487021 : ATTCACAGGTACAATTCAGAATGGTACAGAATCCCTGTAGCGGAacaaaaagtattat : 487078 196 : euLeuValLeuValAsnSerAlaLysAlaValLysIleAsnLeuAlaGlyLeuPheIl : 214 |||||:!!:!! !|||||| !|||! !! !! !||| |||!.!|||:!!.!! euLeuLeuMetGlnAsnSerLeuLysAspAspMetIleLeuLeuGlyGlyIleIlePr 487079 : tacTCCTGATGCAAAATAGTTTAAAAGATGATATGATCCTACTTGGCGGAATTATTCC : 487135 215 : eProSerTyrGluGlyPheSerMetVal : 223 ! !!|||!:!:!!|||||||||:!!||| oAlaSerPheGlnGlyPheSerLeuVal 487136 : TGCATCTTTCCAGGGATTTTCACTGGTA : 487164 vulgar: Lalb_14674 175 223 . KQ414815.1 487020 487164 + 114 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 487021 487164 114 + . gene_id 3 ; sequence Lalb_14674 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 487021 487164 . + . KQ414815.1 exonerate:protein2genome:local exon 487021 487164 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 487021 487164 114 + . alignment_id 3 ; Query Lalb_14674 ; Align 487021 176 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14674 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 175 -> 226 Target range: 469208 -> 469364 176 : IleGluSerTyrAsnSerValTrpTyrLeuIleProProGluSerGlnLysMetLeuL : 195 :!:.!.!!!|||||||||:!!||||||:!! !||| !! !::!|||:!:|||| LeuAsnArgTyrAsnSerLeuTrpTyrIleAlaProThrProValArgLysLeuLeuL 469209 : TTGAACAGATACAATAGTCTATGGTATATAGCACCAACGCCTGTAAGGAAATTACTAT : 469266 196 : eu<->LeuValLeuValAsnSerAlaLysAlaValLysIleAsnLeuAlaGlyLeuPh : 213 || :!!:!!||| !||| ! !:!! !||| ! :!!!.!||||||!: euThrMetMetLeuGlnAsnValArgGlnArgValPheLysLeuMetGlyGlyLeuTy 469267 : TAACCATGATGCTGCAAAATGTAAGACAGCGCGTTTTCAAGTTAATGGGAGGATTGTA : 469323 214 : eIleProSerTyrGluGlyPheSerMetValIleLeuLeu : 226 !||| !!!:! !|||||||||||||||||||||:!!||| rIleThrAsnIleGluGlyPheSerMetValIleMetLeu 469324 : TATAACTAATATCGAAGGTTTTTCCATGGTAATCATGTTA : 469364 vulgar: Lalb_14674 175 226 . KQ414815.1 469208 469364 + 100 M 20 60 G 0 3 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 469209 469364 100 + . gene_id 4 ; sequence Lalb_14674 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 469209 469364 . + . KQ414815.1 exonerate:protein2genome:local exon 469209 469364 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 469209 469364 100 + . alignment_id 4 ; Query Lalb_14674 ; Align 469209 176 60 ; Align 469272 196 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14649 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 176 Query range: 149 -> 234 Target range: 482773 -> 483138 150 : HisThrGluAlaLysThrPheLeuArgSerLeuLysAsnThrPheSerPheSerTyrS : 169 |||..!.!. !! !!! !|||:!! ! !||||||:!! !!:! !|||||||||: HisValHisPro***ArgPheValAspHisLeuLysAspArgTyrValPheSerTyrA 482774 : CATGTTCATCCTTAAAGGTTTGTAGACCATTTAAAAGACCGATACGTATTCTCTTATG : 482831 170 : erValLeuLeuValPheAlaValGlySerLeuAlaIleAsnLeuPheArg >>>> T : 186 !!:!!:!!|||:!!|||!.!|||! !||||||::!|||||||||||| ! laIleValLeuLeuPheGlyValValSerLeuSerIleAsnLeuPheAla++ 482832 : CTATTGTTCTTTTGTTCGGTGTTGTCTCTCTCAGCATTAACCTGTTCGCCgt...... : 482884 187 : arget Intron 1 >>>> LeuSerThrAlaIleCysGluThrHisAspIleGluG : 198 110 bp |||! ! !:!!|||! ! !:!! ! ! |||:!!! ++LeuLeuGlnSerIlePheLeuSerLysLysIleGlnA 482885 : ...................agCTGTTGCAATCGATTTTTCTATCGAAGAAAATCCAAG : 483028 199 : luMetIleLeuSerPheLeuPheSerValSerGluLeuValTyrMetPheTyrLeuAs : 217 !:! !:!!:!!!!! !!||||||! !||||||||||||!.!||||||||||||:!!|| spThrLeuIleCysValLeuPheIleValSerGluLeuAlaTyrMetPheTyrMetAs 483029 : ACACGCTAATCTGTGTTCTGTTCATCGTTTCCGAGCTGGCGTACATGTTTTACATGAA : 483085 218 : nTyrValValGlnGlnSerLeuAspTyrAlaAspValLeuProThrIleMet : 234 ||||:!!||||||!::!!!:!!||| !|||||| !:!! !|||.!!||| nTyrMetValGlnArgThrValAspThrAlaAspAsnIleIleThrPheMet 483086 : CTACATGGTGCAACGCACCGTAGACACTGCGGACAACATTATTACATTCATG : 483138 vulgar: Lalb_14649 149 234 . KQ414815.1 482773 483138 + 176 M 36 108 5 0 2 I 0 106 3 0 2 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482774 483138 176 + . gene_id 1 ; sequence Lalb_14649 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 482774 482881 . + . KQ414815.1 exonerate:protein2genome:local exon 482774 482881 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 482882 482883 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 482882 482991 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 482990 482991 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 482992 483138 . + . KQ414815.1 exonerate:protein2genome:local exon 482992 483138 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482774 483138 176 + . alignment_id 1 ; Query Lalb_14649 ; Align 482774 150 108 ; Align 482992 186 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14649 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 33 -> 115 Target range: 481992 -> 482238 34 : AlaThrLeuLeuLeuValValPheArgThrSerSerTyrValLeuLeuValThrAlaS : 53 :!!..!|||:!!|||:!!:!!! !!.!! !||||||!:!|||||| !|||! !!.! SerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValP 481993 : TCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTC : 482050 54 : erProAspSerAsnValThrAspProPheProValValThrAspTyrMetIleAspGl : 72 !!! !:!!..!!.! !||| !!! !||||||||| !! !!!:|||.!.|||||||| roLeuAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGl 482051 : CTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCA : 482107 73 : nGluLysTyrPhePhePheIleIleMetHisGlnAsnValThrPhePhePheValAla : 91 |:!!||||||! .!!||||||! .!.|||||| !!:!!|||.!! ! |||||| nGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAla 482108 : GCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCA : 482164 92 : ThrIleTyrValAlaSerGluThrLeuPheIleMetTrpLeuGlnTyrGlyIleGlyL : 111 |||||| !|||!.!! !|||||||||.!!:!!|||||||||:!!:!!!.! !.!!| ThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerL 482165 : ACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCT : 482224 112 : euPheGluLeuMet : 115 ||||| |||:!: euPheThrLeuVal 482225 : TGTTCACCCTTGTA : 482238 vulgar: Lalb_14649 33 115 . KQ414815.1 481992 482238 + 172 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481993 482238 172 + . gene_id 2 ; sequence Lalb_14649 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481993 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 481993 482238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481993 482238 172 + . alignment_id 2 ; Query Lalb_14649 ; Align 481993 34 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14649 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 64 -> 121 Target range: 478635 -> 478806 65 : ValThrAspTyrMetIleAspGlnGluLysTyrPhePhePheIleIleMetHisGlnA : 84 ..!|||!!:|||.!.||||||::::::|||||||||...||||||||| ||| ! ThrThrGluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValT 478636 : ACCACGGAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGT : 478693 85 : snValThrPhePhePheValAlaThrIleTyrValAlaSerGluThrLeuPheIleMe : 103 !!:!!:!!!!..!..!. !||||||:!!|||||||||!!!|||:!!! ! ! ||||| yrLeuSerLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMe 478694 : ACCTGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTAT : 478750 104 : tTrpLeuGlnTyrGlyIleGlyLeuPheGluLeuMetSerTyrHisIleGluLys : 121 ||||:!! !:!! !|||||||||!:!.!.:!!!!:!!!|||:!! :!!!:! tTrpMetValHisThrIleGlyLeuTyrAsnIleIleArgTyrAsnGlnGlnArg 478751 : GTGGATGGTGCATACTATCGGCTTGTATAATATCATAAGGTATAATCAGCAAAGA : 478806 vulgar: Lalb_14649 64 121 . KQ414815.1 478635 478806 + 138 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478636 478806 138 + . gene_id 3 ; sequence Lalb_14649 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478636 478806 . + . KQ414815.1 exonerate:protein2genome:local exon 478636 478806 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478636 478806 138 + . alignment_id 3 ; Query Lalb_14649 ; Align 478636 65 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14647 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 53 -> 99 Target range: 465779 -> 465917 54 : TyrAspThrGluTrpTyrSerIleProValProValGlnLysPheIleIleLeuIleM : 73 |||||||||:!!||||||!!!:!!|||:!!|||!.!||||||!!.:!:|||!!!|||| TyrAspThrGlnTrpTyrArgLeuProLeuProAlaGlnLysLeuValIlePheIleM 465780 : TACGATACGCAATGGTATAGACTTCCTTTACCTGCACAAAAATTAGTGATTTTCATTA : 465837 74 : etLysArgSerLeuGlnProCysIleLeuThrLeuGlyLysMetTyrProProSerCy : 92 ||:!!||||||:!!:!! ! !:!:!!!|||:!! !!|||:!:||| !|||||| ! etGlnArgSerMetLysSerAsnValPheThrValCysLysLeuTyrValProSerAr 465838 : TGCAAAGAAGCATGAAAAGTAATGTGTTCACAGTGTGCAAACTCTACGTTCCCTCGCG : 465894 93 : sGluGlyPheAlaMetValLys : 99 :!!||| !!|||! !|||||| gGlnGlyValAlaLysValLys 465895 : ACAAGGTGTCGCAAAGGTAAAA : 465917 vulgar: Lalb_14647 53 99 . KQ414815.1 465779 465917 + 134 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 465780 465917 134 + . gene_id 1 ; sequence Lalb_14647 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 465780 465917 . + . KQ414815.1 exonerate:protein2genome:local exon 465780 465917 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 465780 465917 134 + . alignment_id 1 ; Query Lalb_14647 ; Align 465780 54 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14662 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 592 Query range: 117 -> 336 Target range: 3387 -> 6459 118 : GlnTyrPheValLeuValAlaCysGlyIleGlyTyrIleCysValAspAsnPheIleCysIl : 138 ||| !|||:!!:!!:!! ! ! !!|||.!!|||:!!|||:!!|||||||||:!:|||!! GlnIlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheLeuCysMe 3388 : CAGATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTCTGTGCAT : 3448 139 : eSerAsnPheHisValAlaThrGlnPheArgIleLeuGlnTyrArgIleLeuAsnValHisL : 159 :! !|||.!.|||..!||||||||||||||||||||||||||||||:!:! !|||||| ! tIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnValCysG 3449 : GATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAATGTGTGCG : 3511 160 : ysArgThrGlnThrGluIleGlyIleGlyThrProSerLysLeuSerAlaAspArgAlaAsp : 179 !!.!:!! !... ||| |||||| ::: !!..!!.!:!!||| lyAlaAsnGluArgSerAspLysIle---------SerLysLysThrProSerAsnSerAsp 3512 : GTGCAAACGAACGTAgcgataaaatt---------tcgaaaaaaacaCCGTCCAATTCGGAC : 3562 180 : TyrCysTyrThrValPheLysAspCysIleArgGlnHisGlnAlaLeuIleArgTyrTyrGl : 200 ! ||||||.!! !||||||:!!||||||!:!||||||||||||||||||..!|||! !.! GluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAs 3563 : GAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAA : 3625 201 : uAspMetGluGluValPheThrIleAlaAlaLeuAlaGlnIleLeuLeuPheSerValLeuI : 221 . ! :!::!!||||||||| !||| !!.!|||||||||:!:||||||||||||:!!|||! nLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeuLeuM 3626 : CAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAA : 3688 222 : leCysLeuAspGlyTyrLeuMetLeuLeu >>>> Target Intron 1 >>>> GlyG : 232 !:|||||||||||||||||| :!!:!! 457 bp ! !! etCysLeuAspGlyTyrLeu---ValMet++ ++GluA 3689 : TGTGCCTCGATGGATATTTG---GTGATGgt.........................agGAAG : 4175 233 : luSerSerProTyrArgArgLeuSerPheThrPheHisLeuIleGlyThrMetCysGlnLeu : 252 !:!!! !! ! !:!||||||!!!||| !|||||||||! ||| !:!!||||||||| spThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeu 4176 : ATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTG : 4235 253 : TrpMetPheThrTyrSerCysAspCysValLeuGlnGluSerMetArgIleAlaAspThrVa : 273 ! !||||||||||||||||||||||||:!!:!!!:!||||||:!!!.!:!:|||:!!.!!:! LeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIl 4236 : TTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTAT : 4298 274 : lTyrGluThrIleTrpLysAsnLeuProMetAsnThrSerGlyLysMetPheArgThrAspL : 294 !|||!!: ! |||! :!!|||||||||:!!! !||||||::!|||.!.|||! !|||| eTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAspL 4299 : ATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATT : 4361 295 : euGlnValValMetIleArgSerArgValProCysCysLeuThrAlaSerGlyPhePheIle : 314 || ! !!|||!!: !||||||||||||||||||||||||||||||!!!||||||||| ! euThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePhePro 4362 : TGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCT : 4421 315 : ValSerLeuGluThrTyrThrLys >>>> Target Intron 2 >>>> ValLeuSer : 325 |||||||||||||||||||||..! 1970 bp |||:!!||| ValSerLeuGluThrTyrThrSer++ ++ValIleSer 4422 : GTGTCACTGGAAACGTACACTTCGgt.........................agGTTATAAGT : 6424 326 : ThrAlaAlaSerTyrPheThrLeuLeuArgGln : 336 ||||||!.!|||||||||||||||||||||||| ThrAlaValSerTyrPheThrLeuLeuArgGln 6425 : ACAGCAGTGTCGTACTTCACACTGTTAAGGCAA : 6459 vulgar: Lalb_14662 117 336 . KQ414828.1 3387 6459 + 592 M 50 150 G 3 0 M 57 171 G 1 0 M 2 6 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 3388 6459 592 + . gene_id 1 ; sequence Lalb_14662 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 3388 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3388 3714 . + . insertions 0 ; deletions 4 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6459 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6459 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 3388 6459 592 + . alignment_id 1 ; Query Lalb_14662 ; Align 3388 118 150 ; Align 3538 171 171 ; Align 3709 229 6 ; Align 4172 231 276 ; Align 6418 323 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14662 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 559 Query range: 121 -> 336 Target range: 18048 -> 19897 122 : LeuValAlaCysGlyIleGlyTyrIleCysValAspAsnPheIleCysIleSerAsnPhe : 141 ||| ! ! !|||:!:.!!|||.!!||| |||||||||:::||||||! !|||!!. LeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeu 18049 : CTGTACCATATTGGCGTGAGTTATTTCTgcttcgacaattttttatgcatCATGAACTTG : 18106 142 : HisValAlaThrGlnPheArgIleLeuGlnTyrArgIleLeuAsnValHis<-><->Lys : 159 |||!.!|||||||||||||||:!!||||||||||||!!: !|||:!! ! ||| HisAlaAlaThrGlnPheArgValLeuGlnTyrArgMetAlaAsnMetThrAspLeuLys 18107 : CACGCGGCTACTCAGTTTCGAGTATTGCAATACCGAATGGCGAATATGACCGATTTAAAG : 18166 160 : ArgThrGlnThrGluIleGlyIleGlyThrProSerLysLeuSerAlaAspArgAlaAsp : 179 ::: ::: ! !!||| ! !|||||| ! !||| AspLysGluArgLysGluArgAsnMetLysThrSerValSerSerAlaCysPheAlaThr 18167 : GacaaagagaggaaagagagaaatatgaAGACAAGTGTGAGTTCGGCGTGCTTTGCAACA : 18226 180 : TyrCysTyrThrValPheLysAspCysIleArgGlnHisGlnAlaLeuIleArgTyrTyr : 199 ! ||||||!.!|||.!!||||||! !||||||||||||||| !|||||| !|||! ! GluCysTyrAsnValLeuLysAspTyrIleArgGlnHisGlnAsnLeuIleAlaTyrCys 18227 : GAATGTTACAACGTTCTCAAAGATTATATCAGACAGCATCAGAACCTGATTGCTTATTGC : 18286 200 : GluAspMetGluGluValPheThrIleAlaAlaLeuAlaGlnIleLeuLeuPheSerVal : 219 .!. ! :!:|||:!!||||||!.!||| !!.!|||!.!|||:!:|||:!!||||||:!! AsnLysLeuGluLysValPheAsnIleIleValLeuGlyGlnLeuLeuMetPheSerMet 18287 : AACAAACTCGAGAAAGTGTTCAATATCATTGTTCTGGGGCAATTGTTAATGTTCAGCATG : 18346 220 : LeuIleCysLeuAspGlyTyrLeuMetLeuLeu >>>> Target Intron 1 >>>> : 231 ||||||||||||||||||!:!! !!!:|||:!! 975 bp LeuIleCysLeuAspGlyPheGlnIleLeuMet++ 18347 : TTGATCTGTCTCGATGGATTTCAGATACTTATGgt......................... : 18384 232 : GlyGluSerSerProTyrArgArgLeuSerPheThrPheHisLeuIleGlyThrMetC : 250 !.!.!.!!! !! !! ! !||||||! !|||! !||||||:!! !!.! !|||| ++AlaAsnThrProThrArgThrArgLeuIlePheIlePheHisIleGlyAlaCysMetC 18385 : agGCAAATACACCTACCAGAACCCGACTGATTTTCATCTTTCACATAGGAGCATGCATGT : 19414 251 : ysGlnLeuTrpMetPheThrTyrSerCysAspCysValLeuGlnGluSerMetArgIleA : 270 |||||||| !||||||||||||||||||||||||:!!:!!::!||||||! !!!!! !| ysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSerThrSerThrA 19415 : GTCAATTGCTGATGTTTACCTACAGCTGCGACTGCATCATAAGAGAAAGCACGAGCACCG : 19474 271 : laAspThrValTyrGluThrIleTrpLysAsnLeuProMetAsnThrSerGlyLysMetP : 290 ||!!:.!!||||||... ! !|||! ! !|||||||||!:!.!!..!|||||||||. laGluAlaValTyrSerGlyProTrpThrLeuLeuProMetSerAlaAspGlyLysMetI 19475 : CCGAGGCGGTGTACAGCGGTCCCTGGACACTTTTACCAATGAGCGCAGACGGAAAAATGA : 19534 291 : heArgThrAspLeuGlnValValMetIleArgSerArgValProCysCysLeuThrAlaS : 310 !.|||! !||||||..!:!!|||!!:!!:||||||!!!|||||||||||||||||||||! leArgLysAspLeuMetLeuValIleMetArgSerSerValProCysCysLeuThrAlaA 19535 : TAAGGAAAGATTTGATGCTCGTTATCATGAGATCGAGCGTACCTTGTTGCTTGACAGCCA : 19594 311 : erGlyPhePheIleValSerLeuGluThrTyrThrLys >>>> Target Intron 2 : 323 !!|||||||||:!!||||||||||||||||||||| ! 223 bp rgGlyPhePheValValSerLeuGluThrTyrThrGly++ 19595 : GAGGATTCTTCGTCGTGTCTTTAGAAACGTACACAGGGgt.................... : 19635 324 : >>>> ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgGln : 336 ||||||||||||||||||||||||||||||||||||!:!||| ++ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuLysGln 19636 : .....agGTTTTAAGCACCGCAGCCTCATACTTTACGTTGCTGAAGCAA : 19897 vulgar: Lalb_14662 121 336 . KQ414828.1 18048 19897 + 559 M 37 111 G 0 6 M 72 216 5 0 2 I 0 971 3 0 2 M 92 276 5 0 2 I 0 219 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 18049 19897 559 + . gene_id 2 ; sequence Lalb_14662 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 18049 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18049 18381 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19897 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19897 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 18049 19897 559 + . alignment_id 2 ; Query Lalb_14662 ; Align 18049 122 111 ; Align 18166 159 216 ; Align 19357 231 276 ; Align 19856 323 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14662 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 501 Query range: 115 -> 336 Target range: 32795 -> 34301 116 : LeuThrGlnTyrPheValLeuValAlaCysGlyIleGlyTyrIleCysValAspAsnPhe : 135 ||||||||| !!!. !:!! ! ! !|||:!: !!|||:!!||| ||||||... LeuThrGlnAlaLeuSerValTyrGlnValGlyValCysTyrLeuCysPheAspAsnIle 32796 : ctCACGCAGGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCTttgataacatt : 32853 136 : IleCysIleSerAsnPheHisValAlaThrGlnPheArgIleLeuGlnTyrArgIleLeu : 155 ... ||| !.!.||||||||| !||||||||||||||||||||||||||| ! PhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAla 32854 : tttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCC : 32913 156 : AsnValHisLysArgThrGlnThrGluIleGlyIleGlyThrProSerLysLeuSerAla : 175 |||||| ! !!:!:!!! ! :!: !! !..! ! !!!!!.. !:!!! ! AsnValSerGlyLeuSerGluIle---ValLysSerAsnAspAsnThrSerThrAlaGlu 32914 : AATGTGTCAGGTCTAAGCGAGATA---GTGAAGAGCAATGATAATACAAGCACGGCTGAA : 32970 176 : AspArgAlaAspTyrCysTyrThrValPheLysAspCysIleArgGlnHisGlnAlaLeu : 195 !:!!!!: ! ||||||! ! !||||||:!!||||||!:!||||||||||||||| LeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeu 32971 : TTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTa : 33030 196 : IleArgTyrTyrGluAspMetGluGluValPheThrIleAlaAlaLeuAlaGlnIleLeu : 215 |||...::: ||| :::|||||||||||||||:!! !!.!|||!.!|||:!!||| IleGluPheCysGluIleLeuGluGluValPheThrValIleValLeuGlyGlnValLeu 33031 : attgaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTA : 33090 216 : LeuPheSerValLeuIleCysLeuAspGlyTyrLeuMetLeuLeu >>>> Target I : 231 :!!||||||:!!:!!||||||!!!! !|||||| !:!:|||||| 406 MetPheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeu++ 33091 : ATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGgt............. : 33140 232 : ntron 1 >>>> GlyGluSerSerProTyrArgArgLeuSerPheThrPheHisLeuI : 246 bp ! !! ! !! ! ! !|||:!!:!!||||||! ! !|||| ++IleThrLeuProPheGluSerArgValAlaPheThrCysPheLeuI 33141 : ............agATAACGTTACCATTTGAATCGCGCGTTGCTTTCACGTGCTTCTTGA : 33589 247 : leGlyThrMetCysGlnLeuTrpMetPheThrTyrSerCysAspCysValLeuGlnGluS : 266 || ! !:!! !!|||||||||||||||||||||||||||:!!|||:!! ! !|||| leThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAsnCysIleThrThrGluS 33590 : TTACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCAATTGCATAACAACAGAAA : 33649 267 : erMetArgIleAlaAspThrValTyrGluThrIleTrpLysAsnLeuProMetAsnThrS : 286 ||:!!!.!||||||!!::!!||||||! ! !|||! !||||||||||||::: erLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysP 33650 : GCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATggataaat : 33709 287 : erGlyLysMetPheArgThrAspLeuGlnValValMetIleArgSerArgValProCysC : 306 ||||||:::.!.|||! !||||||||||||:!!!!::!:|||:!!||| !|||! !. heGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerA 33710 : ttggaaaactgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCG : 33769 307 : ysLeuThrAlaSerGlyPhePheIleValSerLeuGluThrTyrThrLys >>>> Tar : 323 .!|||||||||!!!||||||||| !:!!!!!|||||||||!:!|||||| laLeuThrAlaCysGlyPhePheSerIleThrLeuGluThrPheThrLys++ 33770 : CTTTGACTGCCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTACTAAGgt........ : 33822 324 : get Intron 2 >>>> ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgGl : 336 440 bp :!!:!!||||||:!! !||||||||||||||||||!:!|| ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGl 33823 : .................agATCATGAGTACATCAATGTCGTATTTCACCCTACTAAAACA : 34299 337 : n : 336 | n 34300 : A : 34301 vulgar: Lalb_14662 115 336 . KQ414828.1 32795 34301 + 501 M 48 144 G 1 0 M 66 198 5 0 2 I 0 402 3 0 2 M 92 276 5 0 2 I 0 436 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32796 34301 501 + . gene_id 3 ; sequence Lalb_14662 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32796 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32796 33137 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 2 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34301 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34301 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32796 34301 501 + . alignment_id 3 ; Query Lalb_14662 ; Align 32796 116 144 ; Align 32940 165 198 ; Align 33544 231 276 ; Align 34260 323 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14662 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 459 Query range: 121 -> 335 Target range: 10840 -> 13143 122 : LeuValAlaCysGlyIleGlyTyrIleCysValAspAsnPheIleCysIleSerAsnPhe : 141 ||| ! ! |||||| !!|||.!!||| !!||||||.!!.!!||||||! !!:! ! LeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerVal 10841 : CTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTG : 10898 142 : HisValAlaThrGlnPheArgIleLeuGlnTyrArgIleLeuAsnValHisLysArgThr : 161 |||:!!::! !||||||||||||||||||||||||:!: !!!.:!! ... !..! HisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeu---SerAspVal 10899 : CATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTG---TCCGACGTA : 10955 162 : GlnThrGluIleGlyIleGlyThrProSerLysLeuSerAlaAspArgAlaAspTyrCys : 181 ||| !:!!|||... ... ......:!!! !! !||| !!.!! ! ! ! GlnTyrGlnIleSerGluLysAsnMetGluSerValLeuGluAspCysThrArgArgSer 10956 : CAATATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGTAGATCT : 11015 182 : TyrThrValPheLysAspCysIleArgGlnHisGlnAlaLeuIleArgTyrTyrGluAsp : 201 ||| ! !||||||..!! !:!!||||||||||||.!!|||||| !||||||||| ! TyrGluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLys 11016 : TACGAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAG : 11075 202 : MetGluGluValPheThrIleAlaAlaLeuAlaGlnIleLeuLeuPheSerValLeuIle : 221 :!:|||.!.|||!:!|||! ! ! !|||!.!|||:!:||||||||||||||||||||| LeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIle 11076 : CTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATT : 11135 222 : CysLeuAspGlyTyrLeuMetLeuLeu >>>> Target Intron 1 >>>> GlyG : 232 |||||| !||||||! !!!:|||||| 1305 bp !.!. CysLeuPheGlyTyrGlnIleLeuLeu++ ++AlaA 11136 : TGCCTCTTTGGTTATCAGATATTATTGgt.........................agGCTA : 12473 233 : luSerSerProTyrArgArgLeuSerPheThrPheHisLeuIleGlyThrMetCysGlnL : 252 !.!!!|||! ! |||||| !! !|||! !|||! !:!! !|||.!!||| ! !| snThrSerLeuAlaArgArgSerIlePheMetPheLeuIleCysGlyAlaMetValLeuL 12474 : ATACTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTTTTAT : 12533 253 : euTrpMetPheThrTyrSerCysAspCysValLeuGlnGluSerMetArgIleAlaAspT : 272 ||!::||||||||||||||||||:!! |||:!!:!!:!!||| !.!|||||| !. euPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAlaPheA 12534 : TGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCTTTTG : 12593 273 : hrValTyrGluThrIleTrpLysAsnLeuProMetAsnThrSerGlyLysMetPheArgT : 292 !!!.!|||..!.!!:!!|||! !..!:!!|||||||||! !!!!||||||! !.!.||| laAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeuArgH 12594 : CGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTACGGC : 12653 293 : hrAspLeuGlnValValMetIleArgSerArgValProCysCysLeuThrAlaSerGlyP : 312 !|||||| !:!!|||!!: ||||||||| ! !|||||||||||||||!:!|||| isAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsnGlyP 12654 : ATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATGGAT : 12713 313 : hePheIleValSerLeuGluThrTyrThr--{L} >>>> Target Intron 2 >>> : 322 ||||| !|||||||||||||||||||||##{:} 357 bp hePheProValSerLeuGluThrTyrThr##{G}++ 12714 : TTTTCCCTGTGTCCTTAGAAACTTATACTAC{G}gt........................ : 12748 323 : > {ys}ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuArg : 335 {!!}:::|||||||||||||||||||||||||||||||||||| +-{lu}IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArg 12749 : .ac{ag}attttgAGTACCGCGGCGTCGTACTTCACATTATTGAGA : 13143 vulgar: Lalb_14662 121 335 . KQ414828.1 10840 13143 + 459 M 36 108 G 1 0 M 72 216 5 0 2 I 0 1301 3 0 2 M 91 273 F 0 2 S 0 1 5 0 2 I 0 353 3 0 2 S 1 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10841 13143 459 + . gene_id 4 ; sequence Lalb_14662 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 10841 11164 . + . KQ414828.1 exonerate:protein2genome:local exon 10841 11164 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 11165 11166 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 11165 12469 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12468 12469 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 12470 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12470 12745 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13102 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13101 13102 . + . intron_id 1 ; splice_site "ac" KQ414828.1 exonerate:protein2genome:local cds 13103 13143 . + . KQ414828.1 exonerate:protein2genome:local exon 13103 13143 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10841 13143 459 + . alignment_id 4 ; Query Lalb_14662 ; Align 10841 122 108 ; Align 10949 159 216 ; Align 12470 231 273 ; Align 13105 323 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14662 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 432 Query range: 115 -> 323 Target range: 22716 -> 23829 116 : LeuThrGlnTyrPheValLeuValAlaCysGlyIleGlyTyrIleCysValAspAsnPhe : 135 ||||||||| !!!. !:!! ! ! !.!! !!|||:!!||| ||| ... LeuThrGlnAlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIle 22717 : ctCACGCAGGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatt : 22774 136 : IleCysIleSerAsnPheHisValAlaThrGlnPheArgIleLeuGlnTyrArgIleLeu : 155 ... ||| .!.||||||||| !||||||||||||||||||||||||||| ! PhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAla 22775 : tttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCC : 22834 156 : AsnValHisLysArgThrGlnThrGluIleGlyIleGlyThrProSerLysLeuSerAla : 175 |||||| ! !!:!:!!! !! !! !.!!! !! !!.!|||||| !..!! ! AsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSer---ThrAspGlu 22835 : AATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGC---ACAGATGAA : 22891 176 : AspArgAlaAspTyrCysTyrThrValPheLysAspCysIleArgGlnHisGlnAlaLeu : 195 !:!!!!: ! ||||||! ! !||||||:!!||||||!:!||||||||||||||| LeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeu 22892 : TTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTA : 22951 196 : IleArgTyrTyrGluAspMetGluGluValPheThrIleAlaAlaLeuAlaGlnIleLeu : 215 |||..!!:!! !! ! :!:|||||||||||||||:!! !!.!|||!.!|||:!!||| IleGluPheCysAlaThrLeuGluGluValPheThrValIleValLeuGlyGlnValLeu 22952 : ATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCTA : 23011 216 : LeuPheSerValLeuIleCysLeuAspGlyTyrLeuMetLeuLeuGlyGluSerSerPro : 235 :!!! !|||:!!|||||||||!!! !||||||! !:!:||||||! !...! !..! ! MetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeuValSerIleGluSer 23012 : ATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGGTGAGTATCGAAAGC : 23071 236 : TyrArgArgLeu{S} >>>> Target Intron 1 >>>> {er}PheThrPheHis : 244 |||!.!!:!! !{|} 492 bp {||}|||.!!! ! ! TyrAsnLysTyr{S}++ -+{er}PheAlaCysPhe 23072 : TATAATAAATAC{T}gt.........................tg{CT}TTCGCGTGCTTC : 23590 245 : LeuIleGlyThrMetCysGlnLeuTrpMetPheThrTyrSerCysAspCysValLeuGln : 264 |||!!: ! !||| !!|||||||||||||||||||||||||||||||||:!! ! ! LeuMetMetGlyMetSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThr 23591 : TTGATGATGGGCATGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCATAACAACA : 23650 265 : GluSerMetArgIleAlaAspThrValTyrGluThrIleTrpLysAsnLeuProMetAsn : 284 ||||||:!!!.!||||||!!::!!||||||! ! !|||! !||||||||||||:!! GluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAsp 23651 : GAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATGGAC : 23710 285 : ThrSerGlyLysMetPheArgThrAspLeuGlnValValMetIleArgSerArgValPro : 304 ! !! !||||||:!!.!.|||! !!!:||||||:!!:!!!!::!:|||:!!||| !||| LysPheGlyLysLeuLeuArgLysGluLeuGlnMetLeuIleLeuArgAlaArgArgPro 23711 : AAATTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGGGCGAGACGACCT : 23770 305 : CysCysLeuThrAlaSerGlyPhePheIleValSerLeuGluThrTyrThrLysVal : 323 ! !..!|||||||||!!!||||||||| !:!!||||||||||||!:!||||||||| SerAlaLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 23771 : TCCGCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 23829 vulgar: Lalb_14662 115 323 . KQ414828.1 22716 23829 + 432 M 56 168 G 1 0 M 67 201 S 0 1 5 0 2 I 0 488 3 0 2 S 1 2 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22717 23829 432 + . gene_id 5 ; sequence Lalb_14662 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22717 23086 . + . KQ414828.1 exonerate:protein2genome:local exon 22717 23086 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 23087 23088 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23087 23578 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 23577 23578 . + . intron_id 0 ; splice_site "TG" KQ414828.1 exonerate:protein2genome:local cds 23579 23829 . + . KQ414828.1 exonerate:protein2genome:local exon 23579 23829 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22717 23829 432 + . alignment_id 5 ; Query Lalb_14662 ; Align 22717 116 168 ; Align 22885 173 201 ; Align 23581 241 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14662 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 417 Query range: 115 -> 323 Target range: 37859 -> 38760 116 : LeuThrGlnTyrPheValLeuValAlaCysGlyIleGlyTyrIleCysValAspAsnPhe : 135 ||||||||| !!!. !:!! ! ! !.!! !!|||:!!||| ||| ... LeuThrGlnAlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIle 37860 : ctCACGCAGGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatt : 37917 136 : IleCysIleSerAsnPheHisValAlaThrGlnPheArgIleLeuGlnTyrArgIleLeu : 155 ... ||| .!.||||||||| !||||||||||||||||||||||||||| ! PhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAla 37918 : tttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCC : 37977 156 : AsnValHisLysArgThrGlnThrGluIleGlyIleGlyThrProSerLysLeuSerAla : 175 |||||| ! !!:!:!!! !! !! !.!!! !! !!.!|||||| !..!! ! AsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSer---ThrAspGlu 37978 : AATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGC---ACAGATGAA : 38034 176 : AspArgAlaAspTyrCysTyrThrValPheLysAspCysIleArgGlnHisGlnAlaLeu : 195 !:!!!!: ! ||||||! ! !||||||:!!||||||!:!||||||||||||||| LeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeu 38035 : TTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTA : 38094 196 : IleArgTyrTyrGluAspMetGluGluValPheThrIleAlaAlaLeuAlaGlnIleLeu : 215 |||..!!:!! !! ! :!:|||||||||||||||:!! !||||||!.!|||:!!||| IleGluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnValLeu 38095 : ATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCTA : 38154 216 : LeuPheSerValLeuIleCysLeuAspGlyTyrLeuMetLeuLeuGlyGluSerSerPro : 235 :!!||||||:!!|||||||||!!!! !! !|||! ! ||||||! !...! ! !! ! MetPheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeuValSerIleValArg 38155 : ATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGGTGAGTATCGTTCGC : 38214 236 : TyrArgArgLeuSerPhe >>>> Target Intron 1 >>>> ThrPheHisLeuI : 246 |||!.!!:!! !|||... 280 bp ! !||| !! TyrAsnLysTyrSerMet-+ +-MetPheAlaThrM 38215 : TATAATAAATACTCTatgat.........................aaATGTTCGCAACGA : 38527 247 : leGlyThrMetCysGlnLeuTrpMetPheThrTyrSerCysAspCysValLeuGlnGluS : 266 !: ! !:!! !!|||||||||||||||||||||||||||||||||:!! ! !|||| etThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluS 38528 : TGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAA : 38587 267 : erMetArgIleAlaAspThrValTyrGluThrIleTrpLysAsnLeuProMetAsnThrS : 286 ||:!!!.!||||||!!::!!||||||! ! !|||! !||||||||||||::: erLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysP 38588 : GCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaat : 38647 287 : erGlyLysMetPheArgThrAspLeuGlnValValMetIleArgSerArgValProCysC : 306 ||||||:::.!.|||! !||||||||||||:!!!!::!:|||:!!||| !|||! !! heGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerS 38648 : ttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCT : 38707 307 : ysLeuThrAlaSerGlyPhePheIleValSerLeuGluThrTyrThrLysVal : 323 !|||||||||!!!||||||||| !:!!||||||||||||!:!||||||||| erLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 38708 : CTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 38760 vulgar: Lalb_14662 115 323 . KQ414828.1 37859 38760 + 417 M 56 168 G 1 0 M 69 207 5 0 2 I 0 276 3 0 2 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37860 38760 417 + . gene_id 6 ; sequence Lalb_14662 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37860 38234 . + . KQ414828.1 exonerate:protein2genome:local exon 37860 38234 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 38235 38236 . + . intron_id 1 ; splice_site "at" KQ414828.1 exonerate:protein2genome:local intron 38235 38514 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 38513 38514 . + . intron_id 0 ; splice_site "AA" KQ414828.1 exonerate:protein2genome:local cds 38515 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38515 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37860 38760 417 + . alignment_id 6 ; Query Lalb_14662 ; Align 37860 116 168 ; Align 38028 173 207 ; Align 38515 242 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14662 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 282 Query range: 248 -> 336 Target range: 28559 -> 29233 249 : MetCysGlnLeuTrpMetPheThrTyrSerCysAspCysValLeuGlnGluSerMetArg : 268 :!! !!|||||||||||||||||||||||||||||||||:!! ! !||||||:!!!.! ValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsn 28560 : GTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAAC : 28617 269 : IleAlaAspThrValTyrGluThrIleTrpLysAsnLeuProMetAsnThrSerGlyLys : 288 ||||||!!::!!||||||! ! !|||! !||||||||||||::: |||||| IleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLys 28618 : ATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaa : 28677 289 : MetPheArgThrAspLeuGlnValValMetIleArgSerArgValProCysCysLeuThr : 308 :::.!.|||! !||||||||||||:!!!!::!:|||:!!||| !|||! !! !|||||| LeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThr 28678 : ctgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACT : 28737 309 : AlaSerGlyPhePheIleValSerLeuGluThrTyrThrLys >>>> Target Intr : 323 |||!!!||||||||| !:!!||||||||||||!:!|||||| 410 bp AlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 28738 : GCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt................ : 28784 324 : on 1 >>>> ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgGln : 336 :!!:!!||||||:!! !||||||||||||||||||!:!||| ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGln 28785 : .........agATCATGAGTACATCAATGTCGTATTTCACATTATTAAAACAA : 29233 vulgar: Lalb_14662 248 336 . KQ414828.1 28559 29233 + 282 M 74 222 5 0 2 I 0 406 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28560 29233 282 + . gene_id 7 ; sequence Lalb_14662 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 28560 28781 . + . KQ414828.1 exonerate:protein2genome:local exon 28560 28781 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 28782 28783 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 28782 29191 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 29190 29191 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 29192 29233 . + . KQ414828.1 exonerate:protein2genome:local exon 29192 29233 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28560 29233 282 + . alignment_id 7 ; Query Lalb_14662 ; Align 28560 249 222 ; Align 29192 323 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14662 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 6 -> 83 Target range: 26945 -> 27176 7 : AsnIleValThrAlaThrLeuValPheSerLysLeuIleThrValPheLeuArgLysPro : 26 ||| !:!!.!! !..!|||! !.!.! !|||:!!.!!|||:!! !!:!!!.!||| ! AsnGlyLeuAlaMetValLeuAspIleIleLysIlePheThrLeuValValHisLysLys 26946 : AACGGTTTAGCCATGGTTTTGGATATAATCAAGATTTTCACCCTAGTCGTACACAAGAAA : 27003 27 : GlnPhePheLysLeuIleAlaTyrMetGluLysArgPheTrpHisThrAsnTyrAspSer : 46 :!!|||.!! ||||||! !||||||:!!|||!.!||||||||| !|||||||||..! LysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheTrpHisLeuAsnTyrAspGln 27004 : AAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTTTGGCATTTGAACTACGATCAG : 27063 47 : TyrGluGlnAlaLeuLeuAspLysCysLysGlnLeuSerValValPheIleCysSerPhe : 66 ||||||.!.:!!:!!|||! :!!...|||!:!:!!!!!:!! !|||:!:||| ... TyrGluAsnSerValLeuAlaGlnAlaLysArgMetCysIleTyrPheValCysValLeu 27064 : TACGAGAATTCTGTTTTGGCACAGGCGAAACGAATGTGCATTTACTTCGTGTGcgttttg : 27123 67 : AsnPhePheAlaGlnGlyThrAlaPheSerTyrSerLeuGluSerSerVal : 83 :::||||||:::|||...:!!!.!.!!||||||! !:!!..! !! !||| SerPhePheSerGlnSerSerValLeuSerTyrIleIleArgProLeuVal 27124 : tcatttttttctcaatctTCAGTTCTTTCCTATATCATAAGGCCACTTGTA : 27176 vulgar: Lalb_14662 6 83 . KQ414828.1 26945 27176 + 166 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 26946 27176 166 + . gene_id 8 ; sequence Lalb_14662 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 26946 27176 . + . KQ414828.1 exonerate:protein2genome:local exon 26946 27176 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 26946 27176 166 + . alignment_id 8 ; Query Lalb_14662 ; Align 26946 7 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14662 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 6 -> 77 Target range: 37056 -> 37269 7 : AsnIleValThrAlaThrLeuValPheSerLysLeuIleThrValPheLeuArgLysPro : 26 ||| !:!!.!! !..!|||! !.!.! !|||:!!.!!:!!:!! !!:!!!.!||| ! AsnGlyLeuAlaMetValLeuAspIleIleLysIlePheSerLeuValValHisLysLys 37057 : AACGGTTTAGCCATGGTTTTGGATATAATCAAGATTTTCTCCCTAGTCGTACACAAGAAA : 37114 27 : GlnPhePheLysLeuIleAlaTyrMetGluLysArgPheTrpHisThrAsnTyrAspSer : 46 :!!|||.!! ||||||! !||||||:!!|||!.!|||! !||| !|||||||||..! LysPheLeuGlyLeuIleGluTyrMetGlnLysAsnPheLeuHisLeuAsnTyrAspGln 37115 : AAGTTTCTCGGTCTGATTGAGTACATGCAGAAGAATTTCTTGCATTTGAACTACGATCAG : 37174 47 : TyrGluGlnAlaLeuLeuAspLysCysLysGlnLeuSerValValPheIleCysSerPhe : 66 ||||||.!.:!!:!!:!!! :!!...|||!:!:!!!!!:!! !|||:!:||| ... TyrGluAsnSerValIleAlaGlnAlaLysArgMetCysIleTyrPheValCysValLeu 37175 : TACGAGAATTCTGTTATCGCACAGGCGAAACGAATGTGCATTTACTTCGTGTGcgttttg : 37234 67 : AsnPhePheAlaGlnGlyThrAlaPheSerTyr : 77 :::||||||:::|||...:!!!.!.!!|||||| SerPhePheSerGlnSerSerValLeuSerTyr 37235 : tcatttttttctcaatctTCAGTTCTTTCCTAT : 37269 vulgar: Lalb_14662 6 77 . KQ414828.1 37056 37269 + 146 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37057 37269 146 + . gene_id 9 ; sequence Lalb_14662 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37057 37269 . + . KQ414828.1 exonerate:protein2genome:local exon 37057 37269 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37057 37269 146 + . alignment_id 9 ; Query Lalb_14662 ; Align 37057 7 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14660 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 693 Query range: 0 -> 334 Target range: 2273 -> 4450 1 : AspValTyrAsnIleTyrPheValAspTyrGlnGlnAlaTyrLeuPheIleSerValAsnIl : 21 |||!.! ! !:!!!:!.!.:!!! !!! !||| ! !:!!!:!|||! ! !||||| AspAlaAlaPheLeuPheMetIleVal***LeuGlnIleValValTyrIleMetCysAsnIl 2274 : GATGCGGCTTTCCTTTTTATGATTGTTTAATTACAGATCGTTGTATACATAATGTGCAACAT : 2334 22 : eLeuThrValPheGlyGlyLeuPheLysIlePheValLeuLeuProHisArgArgAspPheP : 42 |||||||:!! ! !.!!|||||||||||||||:!!! !:!! ! !!:!!:! ! .... eLeuThrLeuGlyIleSerLeuPheLysIlePheLeuSerMetTrpSerLysLysLysLeuL 2335 : TCTAACACTGGGCATAAGTTTGTTCAAGATCTTTCTCTCGATGTGGAGTAAGAAAAAACttt : 2397 43 : heSerLeuValHisHisLeuGlnHisAsnPheLeuAsnSerAspTyrAspHisHisGluLys : 62 .....|||::: ::! ||||||! !:!!|||||||||||| !!.|||:!! euGluLeuIleLysPheAlaArgThrAsnPheTrpHisSerAspTyrAspSerGlnGluGln 2398 : tggaattaattaaattcgccAGAACGAATTTCTGGCATTCGGATTATGACTCGCAGGAGCAA : 2457 63 : AspIleValAsnArgCysSerSerLeuCysThrIlePheIleGlyLeuLeuThrLeuSerAl : 83 !|||||||||..!|||!.! !! !||||||.!!.!!||| !!:!!!!!!.!!!!! !|| IleIleValAsnGluCysLysArgThrCysThrPheLeuIleCysValPheAsnPhePheAl 2458 : ATTATTGTGAACGAGTGTAAACGCACTTGTACATTCCTTATATGCGTGTTTAATTTCTTCGC : 2520 84 : aHisLeuThrAlaPheCysTyrAlaAlaSerProLeuIle{A} >>>> Target Intro : 97 |:!! !|||!.!! ! ! ||| ! !!!!|||:!!:!!{|} 318 bp aAsnGlyThrValSerGlyTyrIleIleArgProIleVal{A}++ 2521 : TAATGGGACAGTGTCTGGATACATAATCAGGCCAATTGTA{G}gt................. : 2565 98 : n 1 >>>> {la}AsnIleGlyArgAsnGluSerAspArgValLeuProPheAsnLeuTrp : 113 {||}!::||||||:::|||||||||||||||:!!||| ! !!|||!!!||| ++{la}SerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrp 2566 : ........ag{CA}AgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGG : 2928 114 : ValAspLeuProValSerMetThrProTyrTyrGluIleIlePheIleIleGlu >>>> T : 132 :!!|||||||||:!!!!!!!:||||||||||||||||||:::||| |||:!! IleAspLeuProIleThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2929 : ATTGACCTGCCGATAACCATCACACCATactatgaaatattatttacgaTACAGgt...... : 2987 133 : arget Intron 2 >>>> ValLeuSerLeuTyrGlnIleCysValAlaTyrPheCysPh : 145 406 bp :!!!!!! !:!! ! :!!|||:!!::!|||.!!|||.! ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIl 2988 : ...................agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTAT : 3430 146 : eAspAsnPheLeuCysIleMetAsnLeuHisValAlaSerGlnPheArgValLeuGlnTyrA : 166 !|||||||||||||||!!:!!:|||||||||..!|||!!!|||||||||:!!|||||||||| eAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrA 3431 : CGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACA : 3493 167 : rgLeuThrAsnLeuArgTyrLysGlnAspGluLeuAsnArgLeuGlyAspValLysIleCys : 186 |||||:!!|||:!! !! ! !.!.!!:... :::::::::... rgLeuSerAsnValCysGlyAlaAsnGluArgSerAspLysIleSerLysLys--------- 3494 : GACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaa--------- : 3547 187 : MetLeuHisSerThrLysAspValTyrIleThrPheLysSerTyrValArgGlnHisGlnVa : 207 ! ! !!:!:!! ! !!: !||| !! !||||||!:!! !:!!!:!|||||||||!. ThrProSerAsnSerAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAl 3548 : acaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGC : 3607 208 : lLeuIleAlaTyrCysLysLysLeuGluAlaIlePheAsnLeuIleValLeuGlyAspIleL : 228 !||||||! !||||||!!.||||||:!!! !:!:|||..!:!!.!!||||||!.!.!.:!:| aLeuIleGluTyrCysAsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValL 3608 : ACTCATAGAATACTGTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGT : 3670 229 : euThrPheSerValValIleCysLeuAsnGlyCysGlnAlaLeuValValAspSerAlaArg : 248 || !||||||:!!:!!!!:||||||:!!|||! ! !!.!:!!||| ! ! ! !!:! euLeuPheSerLeuLeuMetCysLeuAspGlyTyrLeuValMetValSerArgTyrTyrLys 3671 : TGCTCTTCAGTTTGTTAATGTGCCTCGATGGATATTTGGTGATGGTTAGTAGGTATTACAAA : 3730 249 : >>>> Target Intron 3 >>>> ArgPheIlePheLeuPhePheLeuLeuThrSer : 259 460 bp |||.!!! !||||||||| !||| ! !!!! -+ ++ArgLeuThrPheLeuPheHisLeuThrGlyCys 3731 : at.........................agCGCCTTACTTTCTTGTTTCACCTAACGGGATGC : 4223 260 : PheValHisLeuLeuMetLeuThrTyrSerCysAspGlyValMetArgGluSerValLysVa : 280 .!. !!!.|||||||||!!!||||||||||||||| !!:!!!!:|||||||||:!!!!.|| LeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnVa 4224 : CTGTGCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGT : 4286 281 : lAlaAlaGlyIleTyrAsnSerProTrpCysTyrLeuArgPheAsnLysTyrGlyArgMetL : 301 |||| !!.!||||||:!!!!! !!||| !:!!|||! !.!.:!!!:!! !|||||||||| lAlaAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetL 4287 : GGCCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGC : 4349 302 : euArgLysAspAlaIleLeuIleIleMetArgAlaArgValProCysTyrIleThrAlaArg : 321 ||||||||||| !! !!!!:!!||| |||:!!||||||||||||! !:!!|||||| !! euArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCys 4350 : TGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGT : 4409 322 : GlyPhePheProIleThrLeuGluThrTyrThrLysVal : 334 ||||||||||||:!::!!|||||||||||||||..!||| GlyPhePheProValSerLeuGluThrTyrThrSerVal 4410 : GGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGGTA : 4450 vulgar: Lalb_14660 0 334 . KQ414828.1 2273 4450 + 693 M 96 288 S 0 1 5 0 2 I 0 314 3 0 2 S 1 2 M 34 102 5 0 2 I 0 402 3 0 2 M 52 156 G 3 0 M 62 186 5 0 2 I 0 456 3 0 2 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2274 4450 693 + . gene_id 1 ; sequence Lalb_14660 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2274 2562 . + . KQ414828.1 exonerate:protein2genome:local exon 2274 2562 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2563 2564 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 2563 2880 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 2879 2880 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 2881 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2881 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 2 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3732 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3732 . + . insertions 0 ; deletions 3 KQ414828.1 exonerate:protein2genome:local splice5 3733 3734 . + . intron_id 3 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 3733 4192 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 4191 4192 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4193 4450 . + . KQ414828.1 exonerate:protein2genome:local exon 4193 4450 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2274 4450 693 + . alignment_id 1 ; Query Lalb_14660 ; Align 2274 1 288 ; Align 2883 98 102 ; Align 3391 132 156 ; Align 3547 187 186 ; Align 4193 249 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14660 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 643 Query range: 90 -> 334 Target range: 17806 -> 19635 91 : AlaAlaSerProLeuIleAlaAsnIleGlyArgAsnGluSerAspArgValLeuProPhe : 110 ||| !:!! !:!!:!:||||||||||||:::|||||||||!!:|||:!!||||||||| AlaArgAlaPheIleLeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPhe 17807 : GCTCGCGCTTTCATTTTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTT : 17864 111 : AsnLeuTrpValAspLeuProValSerMetThrProTyrTyrGluIleIlePheIleIle : 130 |||:!!||||||:!!||||||:!!|||||||||||||||||||||||| ||| ::: AsnMetTrpValAsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeu 17865 : AATATGTGGGTCAACTTGCCATTATCAATGACGCCATATTACgaaataactttttcatta : 17924 131 : Glu >>>> Target Intron 1 >>>> ValLeuSerLeuTyrGlnIleCysValA : 141 :!! 110 bp |||||||||||||||!!.||| !!|||: Gln++ ++ValLeuSerLeuTyrHisIleGlyValS 17925 : CAGgt.........................aggtTCTGTCTCTGTACCATATTGGCGTGA : 18067 142 : laTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaSerGlnPheA : 161 :!||||||||||||||||||||||||||||||||||||||||||!.!|||!!!||||||| erTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheA 18068 : GTTATTTCTgcttcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTC : 18127 162 : rgValLeuGlnTyrArgLeuThrAsnLeuArgTyrLysGlnAspGluLeuAsnArgLeuG : 181 |||||||||||||||||:!!.!!|||:!!! ! !! !:!!|||::: ...::: rgValLeuGlnTyrArgMetAlaAsnMetThrAspLeuLysAspLysGluArgLysGluA 18128 : GAGTATTGCAATACCGAATGGCGAATATGACCGATTTAAAGGacaaagagaggaaagaga : 18187 182 : lyAspValLysIleCysMetLeuHisSer<-><->ThrLysAspValTyrIleThrPheL : 199 ::::::|||! ! !!:!! ! :!! .!!! !!!: !|||! !..!.!!| rgAsnMetLysThrSerValSerSerAlaCysPheAlaThrGluCysTyrAsnValLeuL 18188 : gaaatatgaAGACAAGTGTGAGTTCGGCGTGCTTTGCAACAGAATGTTACAACGTTCTCA : 18247 200 : ysSerTyrValArgGlnHisGlnValLeuIleAlaTyrCysLysLysLeuGluAlaIleP : 219 ||..!|||:!!|||||||||||| !|||||||||||||||!!.||||||||| !:!:| ysAspTyrIleArgGlnHisGlnAsnLeuIleAlaTyrCysAsnLysLeuGluLysValP 18248 : AAGATTATATCAGACAGCATCAGAACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGT : 18307 220 : heAsnLeuIleValLeuGlyAspIleLeuThrPheSerValValIleCysLeuAsnGlyC : 239 |||||:!!||||||||||||.!.:!:|||! !||||||:!!:!!|||||||||:!!|||! heAsnIleIleValLeuGlyGlnLeuLeuMetPheSerMetLeuIleCysLeuAspGlyP 18308 : TCAATATCATTGTTCTGGGGCAATTGTTAATGTTCAGCATGTTGATCTGTCTCGATGGAT : 18367 240 : ysGlnAlaLeuVal >>>> Target Intron 2 >>>> ValAspSerAlaArgAr : 249 !||| !|||:!! 981 bp ..! !!!! !! !|| heGlnIleLeuMet++ +-ThrProThrArgThrAr 18368 : TTCAGATACTTATGgt.........................atACACCTACCAGAACCCG : 19378 250 : gPheIlePheLeuPhePheLeuLeuThrSerPheValHisLeuLeuMetLeuThrTyrSe : 269 |.!.||||||:!!||| !:!! !.!!!!!.!. !!!.|||||||||!!!|||||||| gLeuIlePheIlePheHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSe 19379 : ACTGATTTTCATCTTTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAG : 19438 270 : rCysAspGlyValMetArgGluSerValLysValAlaAlaGlyIleTyrAsnSerProTr : 289 ||||||| !!:!!!!:|||||||||..!!....!|||! !!.!:!:|||!:!.!!||||| rCysAspCysIleIleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyProTr 19439 : CTGCGACTGCATCATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTG : 19498 290 : pCysTyrLeuArgPheAsnLysTyrGlyArgMetLeuArgLysAspAlaIleLeuIleIl : 309 | !|||! !.!.!:! ! !!|||!:!|||:!!||||||||| !!!:|||:!!|| pThrLeuLeuProMetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuValIl 19499 : GACACTTTTACCAATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTAT : 19558 310 : eMetArgAlaArgValProCysTyrIleThrAlaArgGlyPhePheProIleThrLeuGl : 329 |||||||:!!!!!|||||||||! !:!:|||||||||||||||||| !:!::!!||||| eMetArgSerSerValProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGl 19559 : CATGAGATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGA : 19618 330 : uThrTyrThrLysVal : 334 |||||||||| !||| uThrTyrThrGlyVal 19619 : AACGTACACAGGGGTA : 19635 vulgar: Lalb_14660 90 334 . KQ414828.1 17806 19635 + 643 M 41 123 5 0 2 I 0 106 3 0 2 M 59 177 G 0 6 M 53 159 5 0 2 I 0 977 3 0 2 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17807 19635 643 + . gene_id 2 ; sequence Lalb_14660 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17807 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17807 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18381 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19362 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 19361 19362 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local cds 19363 19635 . + . KQ414828.1 exonerate:protein2genome:local exon 19363 19635 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17807 19635 643 + . alignment_id 2 ; Query Lalb_14660 ; Align 17807 91 123 ; Align 18040 132 177 ; Align 18223 191 159 ; Align 19363 244 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14660 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 635 Query range: 4 -> 334 Target range: 21867 -> 23829 5 : IleTyrPheValAspTyrGlnGlnAlaTyrLeuPheIleSerValAsnIleLeuThrVal : 24 ||| ...::: ::: |||..!! !:!!!:!!!::!! !|||! !|||.!!:!! IleArgIleIleLeuPhePheGlnValCysMetTyrMetAlaCysAsnSerLeuAlaLeu 21868 : ATAcgtataattttgttttttcaggTTTGCATGTACATGGCATGCAACAGTTTAGCCCTG : 21925 25 : PheGlyGlyLeuPheLysIlePheValLeuLeuProHisArgArgAspPhePheSerLeu : 44 !! !! !:!!.!!|||||||||||||||||| !!..!:!!:! ! |||.!!.!!||| ValLeuAspIleIleLysIlePheValLeuLeuValArgLysLysLysPheLeuGlyLeu 21926 : GTTTTGGATATAATCAAGATTTTCGTCCTACTCGTACGGAAGAAAAAGTTTCTCGGTCTG : 21985 45 : ValHisHisLeuGlnHisAsnPheLeuAsnSerAspTyrAspHisHisGluLysAspIle : 64 :!!.!.:!!:!!||| ! ||||||! !:!!! !:!!||||||!!. !!|||!!...!||| IleGluTyrMetGlnLysAsnPheTrpHisLeuAsnTyrAspGlnAspGluAsnSerIle 21986 : ATTGAGTACATGCAGAAGAATTTTTGGCATTTGAACTACGACCAGGACGAGAATTCTATT : 22045 65 : ValAsnArgCysSerSerLeuCysThrIlePheIleGlyLeuLeuThrLeuSerAlaHis : 84 :!! !.!...!.! !! !|||! ! !|||:!! !!:!!!!!:!!!!!!!!:!!!!. IleAlaHisAlaLysArgThrCysIleTyrPheValCysValPheSerPheCysSerGln 22046 : ATCGCACACGCGAAACGAACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTTCTCAA : 22105 85 : LeuThrAlaPheCysTyrAlaAlaSerProLeuIle{A} >>>> Target Intron : 97 ! !|||!.!|||! !||| ! !!!!|||!!!:!!{:} 170 bp SerThrValPheSerTyrIleIleArgProPheVal{S}++ 22106 : TCTACAGTTTTTTCCTATATAATAAGGCCATTTGTA{T}gt................... : 22147 98 : 1 >>>> {la}AsnIleGlyArgAsnGluSerAspArgValLeuProPheAsnLeuTrp : 113 {!!}|||:!!|||!:!|||||||||||||||! !! ! !!:!:!!:!!||| ++{er}AsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrp 22148 : ......ag{ca}AATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGG : 22362 114 : ValAspLeuProValSerMetThrProTyrTyrGluIleIlePheIleIleGlu >>>> : 132 :!!|||||||||:!!|||:!:|||||||||||||||||| ::!||||||:!! LeuAspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGln++ 22363 : CTCGATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGgt.... : 22421 133 : Target Intron 2 >>>> ValLeuSerLeuTyrGlnIleCysValAlaTyrPheC : 144 307 bp !.!||||||:!!||||||:!! !!!.!..!|||.!!| ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuC 22422 : .....................agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTT : 22762 145 : ysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaSerGlnPheArgValLeuG : 164 |||||||| ...... |||::: ||||||||||||.!!|||||||||:!!|||| ysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuG 22763 : GCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTAC : 22822 165 : lnTyrArgLeuThrAsnLeuArgTyrLysGlnAspGluLeuAsnArgLeuGlyAspValL : 184 ||||||||:!!.!!|||:!! ! ! !...!!: !:!!!!.!!! !! !:!! !! lnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProS 22823 : AATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAA : 22882 185 : ysIleCysMetLeuHisSerThrLysAspValTyrIleThrPheLysSerTyrValArgG : 204 ..! ! ! |||:!!||| !||| !||||||! !||||||!:!! !:!!!:!| erThrAspGluLeuTyrSerGluLys---CysTyrIleLysPheLysAsnCysIleGlnG 22883 : GCACAGATGAATTATACTCAGAGAAA---TGTTACATCAAGTTTAAGAATTGCATTCAAC : 22939 205 : lnHisGlnValLeuIleAlaTyrCysLysLysLeuGluAlaIlePheAsnLeuIleValL : 224 ||||||||!.!||||||! !!:!||| !! !||||||! !:!!|||!..:!!||||||| lnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleValL 22940 : AGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTAC : 22999 225 : euGlyAspIleLeuThrPheSerValValIleCysLeuAsnGlyCysGlnAlaLeuVal : 244 |||||.!.:!!|||! !! !|||:!!:!!||||||!!!! !|||! !|||!.!|||:!! euGlyGlnValLeuMetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeu+ 23000 : TCGGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGg : 23059 245 : >>>> Target Intron 3 >>>> ValAspSerAlaArgArgPheIlePheLeuPh : 254 498 bp :!!...! !! ! !||| !! !||| !! + ++LeuSerPheGluSerArgValAlaPheAlaCy 23060 : t.........................agTTATCATTTGAATCGCGCGTTGCTTTCGCGTG : 23587 255 : ePheLeuLeuThrSerPheValHisLeuLeuMetLeuThrTyrSerCysAspGlyValMe : 274 !||||||:!!! !.!!.!. !!!.|||! !|||!!!||||||||||||||| !!:!!! sPheLeuMetMetGlyMetSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleTh 23588 : CTTCTTGATGATGGGCATGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCATAAC : 23647 275 : tArgGluSerValLysValAlaAlaGlyIleTyrAsnSerProTrpCysTyrLeuArgPh : 294 ! !||||||:!!!!.:!!|||! !..!:!:||| !.!!|||||| !!|||! !.! rThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMe 23648 : AACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAAT : 23707 295 : eAsnLysTyrGlyArgMetLeuArgLysAspAlaIleLeuIleIleMetArgAlaArgVa : 314 .:!!|||!:!|||!:!:!!|||||||||!!: ! !:!!:!!|||:!!||||||||| tAspLysPheGlyLysLeuLeuArgLysGluLeuGlnMetLeuIleLeuArgAlaArgAr 23708 : GGACAAATTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGGGCGAGACG : 23767 315 : lProCysTyrIleThrAlaArgGlyPhePheProIleThrLeuGluThrTyrThrLysVa : 334 !|||! ! !:!:|||||| !!||||||||| !!|||:!!|||||||||!:!|||||||| gProSerAlaLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVa 23768 : ACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGT : 23827 335 : l : 334 | l 23828 : A : 23829 vulgar: Lalb_14660 4 334 . KQ414828.1 21867 23829 + 635 M 92 276 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 34 102 5 0 2 I 0 303 3 0 2 M 61 183 G 1 0 M 50 150 5 0 2 I 0 494 3 0 2 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 21868 23829 635 + . gene_id 3 ; sequence Lalb_14660 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 21868 22144 . + . KQ414828.1 exonerate:protein2genome:local exon 21868 22144 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22145 22146 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22145 22314 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22313 22314 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 22315 22418 . + . KQ414828.1 exonerate:protein2genome:local exon 22315 22418 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22419 22420 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 22419 22725 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 23058 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 23059 23060 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23059 23556 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 23555 23556 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 23557 23829 . + . KQ414828.1 exonerate:protein2genome:local exon 23557 23829 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 21868 23829 635 + . alignment_id 3 ; Query Lalb_14660 ; Align 21868 5 276 ; Align 22317 98 102 ; Align 22726 132 183 ; Align 22909 194 150 ; Align 23557 244 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14660 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 439 Query range: 118 -> 334 Target range: 32765 -> 33822 119 : SerMetThrProTyrTyrGluIleIlePheIleIleGluValLeuSerLeuTyrGlnIle : 138 ..!|||! !||| ::: ||| ::!! :!!!.!||||||:!!||||||:!! GlnMetIleProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnVal 32766 : CAAATGATTCCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTT : 32823 139 : CysValAlaTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaSer : 158 ! |||..!|||.!!||||||||||||...... |||||| !||||||||||||.!! GlyValCysTyrLeuCysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGly 32824 : GGAGTGTGTTACCTTTGCTttgataacatttttttcattatgtgTCTACACGTGGCTGGT : 32883 159 : GlnPheArgValLeuGlnTyrArgLeuThrAsnLeuArgTyrLysGlnAspGluLeuAsn : 178 |||||||||:!!||||||||||||:!!.!!|||:!! ! ! !...!!: !:!!!!. GlnPheArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLys 32884 : CAGTTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAG : 32943 179 : ArgLeuGlyAspValLysIleCysMetLeuHisSerThrLysAspValTyrIleThrPhe : 198 !!! !! !:!!..!!..! ..! |||:!!||| !||| !||||||! !||| SerAsnAspAsnThrSerThrAlaGluLeuTyrSerGluLys---CysTyrIleLysPhe 32944 : AGCAATGATAATACAAGCACGGCTGAATTATACTCAGAGAAA---TGTTACATCAAGTTT : 33000 199 : LysSerTyrValArgGlnHisGlnValLeuIleAlaTyrCysLysLysLeuGluAlaIle : 218 |||!:!! !:!!!:!|||||||||!.!|||||| :::|||::: ||||||! !:!! LysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysGluIleLeuGluGluVal 33001 : AAGAATTGCATTCAACAACATCAGGCACTaattgaattttgtgaaatactCGAAGAGGTA : 33060 219 : PheAsnLeuIleValLeuGlyAspIleLeuThrPheSerValValIleCysLeuAsnGly : 238 |||!..:!!||||||||||||.!.:!!|||! !||||||:!!:!!||||||!!! !||| PheThrValIleValLeuGlyGlnValLeuMetPheSerIleIleIleCysPheAlaGly 33061 : TTCACGGTAATCGTACTCGGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGG : 33120 239 : CysGlnAlaLeuVal >>>> Target Intron 1 >>>> ValAspSerAlaArgA : 249 ! !:!!!.!|||:!! 412 bp :!! ! !! ! !| TyrGluValLeuLeu++ -+LeuProPheGluSerA 33121 : TATGAAGTACTCCTGgt.........................cgTTACCATTTGAATCGC : 33565 250 : rgPheIlePheLeuPhePheLeuLeuThrSerPheValHisLeuLeuMetLeuThrTyrS : 269 || !! !||| !! !||||||:!!|||.!! ! !!!.|||! !|||!!!||||||| rgValAlaPheThrCysPheLeuIleThrGlyValSerGlnLeuTrpMetPheThrTyrS 33566 : GCGTTGCTTTCACGTGCTTCTTGATTACGGGCGTGAGTCAACTATGGATGTTCACGTACA : 33625 270 : erCysAspGlyValMetArgGluSerValLysValAlaAlaGlyIleTyrAsnSerProT : 289 |||||:!! !!:!!! ! !||||||:!!!!.:!!|||! !..!:!:||| !.!!|||| erCysAsnCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProT 33626 : GTTGCAATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCAT : 33685 290 : rpCysTyrLeuArgPheAsnLysTyrGlyArgMetLeuArgLysAspAlaIleLeuIleI : 309 || !!|||! !.!.:::|||:::|||::::::|||||||||||| ! !:!!:!!| rpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuI 33686 : GGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAGGATTTACAAGTGCTCA : 33745 310 : leMetArgAlaArgValProCysTyrIleThrAlaArgGlyPhePheProIleThrLeuG : 329 ||:!!||||||||| !|||! ! !:!:|||||| !!||||||||| !!|||||||||| leLeuArgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleThrLeuG 33746 : TCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATAACTCTCG : 33805 330 : luThrTyrThrLysVal : 334 |||||!:!||||||||| luThrPheThrLysVal 33806 : AAACCTTTACTAAGGta : 33822 vulgar: Lalb_14660 118 334 . KQ414828.1 32765 33822 + 439 M 74 222 G 1 0 M 50 150 5 0 2 I 0 408 3 0 2 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32766 33822 439 + . gene_id 4 ; sequence Lalb_14660 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32766 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32766 33137 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33549 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 33548 33549 . + . intron_id 0 ; splice_site "CG" KQ414828.1 exonerate:protein2genome:local cds 33550 33822 . + . KQ414828.1 exonerate:protein2genome:local exon 33550 33822 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32766 33822 439 + . alignment_id 4 ; Query Lalb_14660 ; Align 32766 119 222 ; Align 32988 194 150 ; Align 33550 244 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14660 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 431 Query range: 131 -> 334 Target range: 10831 -> 12748 132 : ValLeuSerLeuTyrGlnIleCysValAlaTyrPheCysPheAspAsnPheLeuCysIle : 151 :!!! !.!!|||||| ! ! ! :!!..!||||||||||||||||||.!!!!!|||||| IleSerGlyLeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIle 10832 : ATTTCAGGACTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATC : 10889 152 : MetAsnLeuHisValAlaSerGlnPheArgValLeuGlnTyrArgLeuThrAsnLeuArg : 171 |||!:!:!!|||:!!::!.!!|||||||||:!!||||||||||||||||||!!.||| ! MetSerValHisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSer 10890 : ATGAGCGTGCATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCC : 10949 172 : TyrLysGlnAspGluLeuAsnArgLeuGlyAspValLysIleCysMetLeuHisSerThr : 191 !! !||| !!:!!:!!!::... ::::::::: ! :!! ! !!!!!||| AspValGlnTyrGlnIleSerGlu---LysAsnMetGluSerValLeuGluAspCysThr 10950 : GACGTACAATATCAGATAAgcgag---aaaaatatggaatcTGTATTGGAAGACTGTACA : 11006 192 : LysAspValTyrIleThrPheLysSerTyrValArgGlnHisGlnValLeuIleAlaTyr : 211 ::: !||| ! !|||||||||||||||||||||||||||..!||||||! !||| ArgArgSerTyrGluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyr 11007 : CGTAGATCTTACGAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTAT : 11066 212 : CysLysLysLeuGluAlaIlePheAsnLeuIleValLeuGlyAspIleLeuThrPheSer : 231 ! !:!!||||||||| !:!!!:!!.. !|||:!!||||||.!.:!:||| !|||||| TyrGluLysLeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSer 11067 : TACGAGAAGCTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGT : 11126 232 : ValValIleCysLeuAsnGlyCysGlnAlaLeuVal >>>> Target Intron 1 > : 244 |||:!!||||||||| !|||! !||| !|||:!! 1311 bp ValLeuIleCysLeuPheGlyTyrGlnIleLeuLeu++ 11127 : GTGTTAATTTGCCTCTTTGGTTATCAGATATTATTGgt...................... : 11167 245 : >>> ValAspSerAlaArgArgPheIlePheLeuPhePheLeuLeuThrSerPheValH : 262 ..!..! !||||||||| !||||||:!!|||.!!:!!! ! !:!!.!.||| +-ThrSerLeuAlaArgArgSerIlePheMetPheLeuIleCysGlyAlaMetValL 11168 : ...atACTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTTT : 12530 263 : isLeuLeuMetLeuThrTyrSerCysAspGlyValMetArgGluSerValLysValAlaA : 282 |||!!!|||!!!||||||||||||:!! !|||!!:..!:!!|||! !!!.:!!||| euLeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAlaP 12531 : TATTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCTT : 12590 283 : laGlyIleTyrAsnSerProTrpCysTyrLeuArgPheAsnLysTyrGlyArgMetLeuA : 302 !!.! |||::::!!! !||| !:!!! !.!.|||||| !|||!:!! !|||| heAlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeuA 12591 : TTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTAC : 12650 303 : rgLysAspAlaIleLeuIleIleMetArgAlaArgValProCysTyrIleThrAlaArgG : 322 || ! ||| !|||:!!:!!||| !|||:!!||| ! !|||! !:!:||||||!.!| rgHisAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsnG 12651 : GGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATG : 12710 323 : lyPhePheProIleThrLeuGluThrTyrThrLysVal : 334 |||||||||||:!::!!|||||||||||||||! !||| lyPhePheProValSerLeuGluThrTyrThrThrVal 12711 : GATTTTTCCCTGTGTCCTTAGAAACTTATACTACGGTG : 12748 vulgar: Lalb_14660 131 334 . KQ414828.1 10831 12748 + 431 M 48 144 G 1 0 M 63 189 5 0 2 I 0 1307 3 0 2 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10832 12748 431 + . gene_id 5 ; sequence Lalb_14660 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 10832 11164 . + . KQ414828.1 exonerate:protein2genome:local exon 10832 11164 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 11165 11166 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 11165 12475 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12474 12475 . + . intron_id 0 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local cds 12476 12748 . + . KQ414828.1 exonerate:protein2genome:local exon 12476 12748 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10832 12748 431 + . alignment_id 5 ; Query Lalb_14660 ; Align 10832 132 144 ; Align 10976 181 189 ; Align 12476 244 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14660 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 349 Query range: 94 -> 248 Target range: 37450 -> 38216 95 : LeuIleAlaAsnIleGlyArgAsnGluSerAspArgValLeuProPheAsnLeuTrpVal : 114 ::: ||||||:!!|||!:!|||||||||||||||! !! ! !!:!:!!:!!|||:!! IleSerAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 37451 : atttcagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 37508 115 : AspLeuProValSerMetThrProTyrTyrGluIleIlePheIleIleGlu >>>> Ta : 132 |||||||||:!!|||!!:|||||||||||||||||| ::!||||||:!! AspLeuProLeuSerIleThrProTyrTyrGluIleThrTyrIleIleGln++ 37509 : GATCTACCATTATCCATAACAccatattatgaaattacttACATAATACAGgt....... : 37564 133 : rget Intron 1 >>>> ValLeuSerLeuTyrGlnIleCysValAlaTyrPheCysP : 145 307 bp !.!||||||:!!||||||:!! !!!.!..!|||.!!|||| ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysP 37565 : ..................agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCt : 37908 146 : heAspAsnPheLeuCysIleMetAsnLeuHisValAlaSerGlnPheArgValLeuGlnT : 165 ||||| ...... |||::: ||||||||||||.!!|||||||||:!!||||||| heAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnT 37909 : ttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAAT : 37968 166 : yrArgLeuThrAsnLeuArgTyrLysGlnAspGluLeuAsnArgLeuGlyAspValLysI : 185 |||||:!!.!!|||:!! ! ! !...!!: !:!!!!.!!! !! !:!! !!..! yrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSerT 37969 : ACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCA : 38028 186 : leCysMetLeuHisSerThrLysAspValTyrIleThrPheLysSerTyrValArgGlnH : 205 ! ! |||:!!||| !||| !||||||! !||||||!:!! !:!!!:!|||| hrAspGluLeuTyrSerGluLys---CysTyrIleLysPheLysAsnCysIleGlnGlnH 38029 : CAGATGAATTATACTCAGAGAAA---TGTTACATCAAGTTTAAGAATTGCATTCAACAGC : 38085 206 : isGlnValLeuIleAlaTyrCysLysLysLeuGluAlaIlePheAsnLeuIleValLeuG : 225 |||||!.!||||||! !!:!||| !! !||||||! !:!!|||!..:!!|||!.!|||| isGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuG 38086 : ATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCG : 38145 226 : lyAspIleLeuThrPheSerValValIleCysLeuAsnGlyCysGlnAlaLeuValValA : 245 ||.!.:!!|||! !||||||:!!:!!||||||!!! !! !! !|||||||||:!!|||. lyGlnValLeuMetPheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeuValS 38146 : GACAAGTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGGTGA : 38205 246 : spSerAlaArg : 248 .!! !!.!||| erIleValArg 38206 : GTATCGTTCGC : 38216 vulgar: Lalb_14660 94 248 . KQ414828.1 37450 38216 + 349 M 37 111 5 0 2 I 0 303 3 0 2 M 61 183 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37451 38216 349 + . gene_id 6 ; sequence Lalb_14660 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37451 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37451 37561 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 38216 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 38216 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 37451 38216 349 + . alignment_id 6 ; Query Lalb_14660 ; Align 37451 95 111 ; Align 37869 132 183 ; Align 38052 194 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14660 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 247 Query range: 9 -> 136 Target range: 31961 -> 32512 10 : TyrGlnGlnAlaTyrLeuPheIleSerValAsnIleLeuThrValPheGlyGlyLeuPhe : 29 ::: |||!.!! !:!!!:!!!::!! !|||! !:!!.!!:!! !! !! !:!!.!! PheLeuGlnValCysMetTyrMetAlaCysAsnSerIleAlaLeuValLeuAspIleIle 31962 : tttcttcagGTTTGCATGTACATGGCATGCAACAGTATAGCCCTGGTTTTGGATATAATC : 32019 30 : LysIlePheValLeuLeuProHisArgArgAspPhePheSerLeuValHisHisLeuGln : 49 |||||||||||||||:!! !!..!:!!:! ! |||.!!.!!|||:!!.!.:!!:!:||| LysIlePheValLeuValValArgLysLysLysPheLeuGlyLeuIleGluTyrMetGln 32020 : AAGATTTTCGTCCTAGTCGTACGGAAGAAAAAGTTTCTCGGTCTGATTGAGTACATgcag : 32079 50 : HisAsnPheLeuAsnSerAspTyrAspHisHisGluLysAspIleValAsnArgCysSer : 69 ||||||...::: ::!||||||!!. !!|||!!...!|||:!! !.!...!.! LysAsnPhePheHisLeuAsnTyrAspGlnAspGluAsnSerIleIleAlaHisAlaLys 32080 : aagaatttctttcatttgaaCTACGATCAGGACGAGAATTCTATTATCGCACACGCGAAA : 32139 70 : SerLeuCysThrIlePheIleGlyLeuLeuThrLeuSerAlaHisLeuThrAlaPheCys : 89 !! !|||! ! !|||:!! !!:!!!!!:!!!!!!!!:!!!!.! !|||!.!|||! ! ArgThrCysIleTyrPheValCysValPheSerPheCysSerGlnSerThrValPheSer 32140 : CGAACGTGCATCTACTTCGTCTGCGTCTTTTCATTTTGTTCTCAATCTACAGTTTTTTCC : 32199 90 : TyrAlaAlaSerProLeuIle{A} >>>> Target Intron 1 >>>> {la}Asn : 98 ||| ! !!!!|||!!!:!!{:} 170 bp {!!}||| TyrIleIleArgProPheVal{S}++ ++{er}Asn 32200 : TATATAATAAGGCCATTTGTA{T}gt.........................ag{ca}AAT : 32396 99 : IleGlyArgAsnGluSerAspArgValLeuProPheAsnLeuTrpValAspLeuProVal : 118 :!!|||!:!|||||||||||||||! !! ! !!:!:!!:!!|||:!!|||||||||:!! LeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuProLeu 32397 : CTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCATTA : 32456 119 : SerMetThrProTyrTyrGluIleIlePheIleIleGluValLeuSerLeuTyr : 136 |||:!:|||||||||||||||||| ::!||||||:!!|||||| !!:!!!:! SerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuProIlePhe 32457 : TCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCAATTTTC : 32512 vulgar: Lalb_14660 9 136 . KQ414828.1 31961 32512 + 247 M 87 261 S 0 1 5 0 2 I 0 166 3 0 2 S 1 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 31962 32512 247 + . gene_id 7 ; sequence Lalb_14660 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 31962 32223 . + . KQ414828.1 exonerate:protein2genome:local exon 31962 32223 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32224 32225 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32224 32393 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32392 32393 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 32394 32512 . + . KQ414828.1 exonerate:protein2genome:local exon 32394 32512 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 31962 32512 247 + . alignment_id 7 ; Query Lalb_14660 ; Align 31962 10 261 ; Align 32396 98 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14660 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 206 Query range: 252 -> 334 Target range: 38514 -> 38760 253 : LeuPhePheLeuLeuThrSerPheValHisLeuLeuMetLeuThrTyrSerCysAspGly : 272 :!!||| !:!!|||.!! ! !!!.|||! !|||!!!||||||||||||||| !! MetPheAlaThrMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCys 38515 : ATGTTCGCAACGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGC : 38572 273 : ValMetArgGluSerValLysValAlaAlaGlyIleTyrAsnSerProTrpCysTyrLeu : 292 :!!! ! !||||||:!!!!.:!!|||! !..!:!!||| !.!!|||||| !!||| IleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeu 38573 : ATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTA : 38632 293 : ArgPheAsnLysTyrGlyArgMetLeuArgLysAspAlaIleLeuIleIleMetArgAla : 312 ! !.!.:::|||:::|||::::::|||||||||||| ! !:!!:!!|||:!!|||||| ProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAla 38633 : CCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCG : 38692 313 : ArgValProCysTyrIleThrAlaArgGlyPhePheProIleThrLeuGluThrTyrThr : 332 ||| !|||! !! !:!:|||||| !!||||||||| !!|||:!!|||||||||!:!||| ArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThr 38693 : AGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACT : 38752 333 : LysVal : 334 |||||| LysVal 38753 : AAGGTA : 38760 vulgar: Lalb_14660 252 334 . KQ414828.1 38514 38760 + 206 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38515 38760 206 + . gene_id 8 ; sequence Lalb_14660 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38515 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38515 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38515 38760 206 + . alignment_id 8 ; Query Lalb_14660 ; Align 38515 253 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14660 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 248 -> 334 Target range: 28526 -> 28784 249 : ArgPheIlePheLeuPhePheLeuLeuThrSerPheValHisLeuLeuMetLeuThrTyr : 268 ||| !! !!!. !! !|||! !:!!|||.!! ! !!!.|||! !|||!!!|||||| ArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuTrpMetPheThrTyr 28527 : CGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTATGGATGTTCACGTAC : 28584 269 : SerCysAspGlyValMetArgGluSerValLysValAlaAlaGlyIleTyrAsnSerPro : 288 ||||||||| !!:!!! ! !||||||:!!!!.:!!|||! !..!:!!||| !.!!||| SerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyPro 28585 : AGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCA : 28644 289 : TrpCysTyrLeuArgPheAsnLysTyrGlyArgMetLeuArgLysAspAlaIleLeuIle : 308 ||| !!|||! !.!.:::|||:::|||::::::|||||||||||| ! !:!!:!! TrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeu 28645 : TGGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTC : 28704 309 : IleMetArgAlaArgValProCysTyrIleThrAlaArgGlyPhePheProIleThrLeu : 328 |||:!!||||||||| !|||! !! !:!:|||||| !!||||||||| !!|||:!!||| IleLeuArgAlaArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeu 28705 : ATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTC : 28764 329 : GluThrTyrThrLysVal : 334 ||||||!:!||||||||| GluThrPheThrLysVal 28765 : GAAACCTTTACTAAGGTA : 28784 vulgar: Lalb_14660 248 334 . KQ414828.1 28526 28784 + 205 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28527 28784 205 + . gene_id 9 ; sequence Lalb_14660 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28527 28784 . + . KQ414828.1 exonerate:protein2genome:local exon 28527 28784 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28527 28784 205 + . alignment_id 9 ; Query Lalb_14660 ; Align 28527 249 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14660 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 94 -> 136 Target range: 27339 -> 27465 95 : LeuIleAlaAsnIleGlyArgAsnGluSerAspArgValLeuProPheAsnLeuTrpVal : 114 ::::::||||||:!!|||!:!|||||||||||||||! !! ! !|||:!!:!!||| !! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPhe 27340 : attttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTC : 27397 115 : AspLeuProValSerMetThrProTyrTyrGluIleIlePheIleIleGluValLeuSer : 134 |||||||||:!!|||:!:|||||||||||||||||| ::!||||||:!!|||||| !! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 27398 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 27457 135 : LeuTyr : 136 :!!!:! IlePhe 27458 : ATTTTC : 27465 vulgar: Lalb_14660 94 136 . KQ414828.1 27339 27465 + 143 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27340 27465 143 + . gene_id 10 ; sequence Lalb_14660 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27340 27465 . + . KQ414828.1 exonerate:protein2genome:local exon 27340 27465 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27340 27465 143 + . alignment_id 10 ; Query Lalb_14660 ; Align 27340 95 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14657 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 486 Query range: 7 -> 208 Target range: 2384 -> 3717 8 : LysLysAspPheLeuAspLeuLeuValHisLeuArgGlnHisPheLeuGluSerGlnTyrAs : 28 |||||| ! ...|||:::|||::: ||| !:!!|||! !.!.|||.!.||||| LysLysLysLeuLeuGluLeuIleLysPheAlaArgThrAsnPheTrpHisSerAspTyrAs 2385 : AAGAAAAAACttttggaattaattaaattcgccAGAACGAATTTCTGGCATTCGGATTATGA : 2445 29 : pThrAsnGluLysThrIleLeuAspAlaCysLysArgThrCysAlaIlePheIleGlySerP : 49 |:!!.!.|||:!!! !|||:!!:!!! !|||||||||||||||.!!.!!.!!||| !! !| pSerGlnGluGlnIleIleValAsnGluCysLysArgThrCysThrPheLeuIleCysValP 2446 : CTCGCAGGAGCAAATTATTGTGAACGAGTGTAAACGCACTTGTACATTCCTTATATGCGTGT : 2508 50 : heThrPhePheSerHisMetThrLeuLeuGlyTyrValLeuValProLeuIle{V} >>>> : 67 ||!.!||||||:!!:!! !|||:!!! !||||||:!!:!! !|||:!!:!!{!} heAsnPhePheAlaAsnGlyThrValSerGlyTyrIleIleArgProIleVal{A}++ 2509 : TTAATTTCTTCGCTAATGGGACAGTGTCTGGATACATAATCAGGCCAATTGTA{G}gt.... : 2565 68 : Target Intron 1 >>>> {al}SerIleGlyLysAsnGluSerGluArgLeuPhePr : 79 318 bp {.!}|||||||||||||||||||||!!:||||||.!! ++{la}SerIleGlyLysAsnGluSerAspArgLeuLeuIl 2566 : .....................ag{CA}AgtattggaaaaaatgaatccGACAGGTTACTTAT : 2916 80 : oPheAlaVal<->ProGlySerProLeuTyrValThrProTyrTyrGluIleAlaPhePheV : 99 ! !! ! !! !! ! !|||:!! !:!!|||||||||||||||||| ||| : eValAsnPheTrpIleAspLeuProIleThrIleThrProTyrTyrGluIleLeuPheThrI 2917 : AGTCAACTTCTGGATTGACCTGCCGATAACCATCACACCATactatgaaatattatttacga : 2979 100 : alGln >>>> Target Intron 2 >>>> ValLeuValValTyrGluValGlyIleC : 110 !!||| 406 bp :!!!!!:!!:!! ! ||| !!||| leGln++ ++IlePheIleIleMetTyrValCysIleS 2980 : TACAGgt.........................agATTTTTATCATAATGTACGTTTGCATAA : 3418 111 : ysHisPheCysValAspAsnIleLeuCysIleMetAsnLeuHisValAlaThrGlnPheArg : 130 !!:!!.!!|||:!!||||||.!!||||||!!:!!:|||||||||..!||||||||||||||| erTyrLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArg 3419 : GCTACCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGA : 3478 131 : IleLeuGlnTyrArgLeuSerAsnLeuLysCysGluAsnIleGlyAspAspProLeu<->Me : 150 ||||||||||||||||||||||||:!! !!! !||| ! !!...||| ::: IleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAspLysIleSerLy 3479 : ATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttcgaa : 3541 151 : tArgValProSerAlaThrGluAsnSerTyrMetThrPheLysArgCysValGlnHisHisL : 171 :::...|||||| !:!!!!:.!.!!!||| ! !||||||!.!|||:!!|||!!.|||: sLysThrProSerAsnSerAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisG 3542 : aaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATC : 3604 172 : ysThrLeuIleAlaTyrCysAsnLysLeuGluGluValPheAsnLeuIleValPheAlaGln : 191 !!.!!||||||! !|||||||||||||||:!!|||||||||..!:!!.!!|||.!!|||||| lnAlaLeuIleGluTyrCysAsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGln 3605 : AAGCACTCATAGAATACTGTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAA : 3664 192 : IlePheIlePheSerMetLeuIleCysLeuAsnGlyLeuGlnIleLeuVal : 208 :!:!!.:!!||||||:!!|||!!:||||||:!!|||! ! !:!::!!||| ValLeuLeuPheSerLeuLeuMetCysLeuAspGlyTyrLeuValMetVal 3665 : GTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGGATATTTGGTGATGGTT : 3717 vulgar: Lalb_14657 7 208 . KQ414828.1 2384 3717 + 486 M 59 177 S 0 1 5 0 2 I 0 314 3 0 2 S 1 2 M 15 45 G 0 3 M 18 54 5 0 2 I 0 402 3 0 2 M 49 147 G 0 3 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2385 3717 486 + . gene_id 1 ; sequence Lalb_14657 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2385 2562 . + . KQ414828.1 exonerate:protein2genome:local exon 2385 2562 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2563 2564 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 2563 2880 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 2879 2880 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 2881 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2881 2984 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 2 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3717 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3717 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2385 3717 486 + . alignment_id 1 ; Query Lalb_14657 ; Align 2385 8 177 ; Align 2883 68 45 ; Align 2931 83 54 ; Align 3391 101 147 ; Align 3541 150 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14657 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 255 Query range: 64 -> 210 Target range: 32386 -> 33143 65 : LeuIleValSerIleGlyLysAsnGluSerGluArgLeuPheProPheAlaVal<->Pro : 83 ::::::...!:!:!!|||||||||||||||!!:||| ! ! !!:!! !:!! ! ! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 32387 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 32444 84 : GlySerProLeuTyrValThrProTyrTyrGluIleAlaPhePheValGlnValLeuVal : 103 ! ! !||||||! !|||||||||||||||||||||...::!.!.:!!||||||||| ! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 32445 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 32504 104 : ValTyrGluValGly{I} >>>> Target Intron 1 >>>> {le}CysHisPhe : 112 :!!!:!..! ! {!} 307 bp {!:}|||:!!.!! IlePheSerArgGln{M}-+ ++{et}CysTyrLeu 32505 : ATTTTCTCAAGGCaa{a}ct.........................ag{TG}TGTTACCTT : 32838 113 : CysValAspAsnIleLeuCysIleMetAsnLeuHisValAlaThrGlnPheArgIleLeu : 132 ||| |||||||||... |||||| !|||||||||||| !||||||||||||||| CysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeu 32839 : TGCTttgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTA : 32898 133 : GlnTyrArgLeuSerAsnLeuLys<-><->CysGluAsnIle<->GlyAspAspProLeu : 149 |||||||||:!!:!!|||:!!..! !!|||! :!: .!!:!!||| ! ! GlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerAsnAspAsnThr 32899 : CAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACA : 32958 150 : MetArgValProSerAlaThrGluAsnSerTyrMetThrPheLysArgCysValGlnHis : 169 ! ! !!.! !! ! !:!!|||!!.!!!|||!!:! !||||||!.!|||:!!|||!!. SerThrAlaGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGln 32959 : AGCACGGCTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAA : 33018 170 : HisLysThrLeuIleAlaTyrCysAsnLysLeuGluGluValPheAsnLeuIleValPhe : 189 |||:!!.!!|||||| :::|||... |||||||||||||||!..:!!||||||.!! HisGlnAlaLeuIleGluPheCysGluIleLeuGluGluValPheThrValIleValLeu 33019 : CATCAGGCACTaattgaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTC : 33078 190 : AlaGlnIlePheIlePheSerMetLeuIleCysLeuAsnGlyLeuGlnIleLeuValVal : 209 !.!|||:!!.!.!!:||||||!!::!!||||||!!! !|||! !:!!:!!|||:!!||| GlyGlnValLeuMetPheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeuVal 33079 : GGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGGTG : 33138 210 : Ser : 210 ||| Ser 33139 : AGT : 33143 vulgar: Lalb_14657 64 210 . KQ414828.1 32386 33143 + 255 M 18 54 G 0 3 M 26 78 S 0 1 5 0 2 I 0 303 3 0 2 S 1 2 M 31 93 G 0 6 M 4 12 G 0 3 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32387 33143 255 + . gene_id 2 ; sequence Lalb_14657 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32387 32522 . + . KQ414828.1 exonerate:protein2genome:local exon 32387 32522 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32523 32524 . + . intron_id 1 ; splice_site "ct" KQ414828.1 exonerate:protein2genome:local intron 32523 32829 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32828 32829 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32830 33143 . + . KQ414828.1 exonerate:protein2genome:local exon 32830 33143 . + . insertions 9 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32387 33143 255 + . alignment_id 2 ; Query Lalb_14657 ; Align 32387 65 54 ; Align 32444 83 78 ; Align 32832 110 93 ; Align 32931 141 12 ; Align 32946 145 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14657 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 233 Query range: 103 -> 210 Target range: 10840 -> 11170 104 : ValTyrGluValGlyIleCysHisPheCysValAspAsnIleLeuCysIleMetAsnLeu : 123 :!!||| ..!|||||||||:!!|||||| !!|||||||||!!!|||||||||!:!:!! LeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerVal 10841 : CTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTG : 10898 124 : HisValAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnLeuLys<-><->Cys : 141 |||:!!::! !|||||||||||||||||||||||||||!!!!!.|||... HisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGln 10899 : CATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAA : 10958 142 : GluAsnIleGlyAspAspProLeuMetArgVal<->ProSerAlaThrGluAsnSerTyr : 160 ! .!.|||...::: ::: !||| !..!..!|||...!..|||||| TyrGlnIleSerGluLysAsnMetGluSerValLeuGluAspCysThrArgArgSerTyr 10959 : TATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGTAGATCTTAC : 11018 161 : MetThrPheLysArgCysValGlnHisHisLysThrLeuIleAlaTyrCysAsnLysLeu : 180 !! !||||||!!!! !|||!:!!!.|||:!!|||||||||! !|||! !.!.|||||| GluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLysLeu 11019 : GAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAGCTT : 11078 181 : GluGluValPheAsnLeuIleValPheAlaGlnIlePheIlePheSerMetLeuIleCys : 200 |||.!.|||!:!!.. !|||:!!.!!!.!|||:!:!!.:!:||||||:!!||||||||| GluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIleCys 11079 : GAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATTTGC : 11138 201 : LeuAsnGlyLeuGlnIleLeuValValSer : 210 ||| !|||! !|||||||||:!!|||||| LeuPheGlyTyrGlnIleLeuLeuValSer 11139 : CTCTTTGGTTATCAGATATTATTGGTTAGT : 11170 vulgar: Lalb_14657 103 210 . KQ414828.1 10840 11170 + 233 M 37 111 G 0 6 M 12 36 G 0 3 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10841 11170 233 + . gene_id 3 ; sequence Lalb_14657 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 10841 11170 . + . KQ414828.1 exonerate:protein2genome:local exon 10841 11170 . + . insertions 9 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10841 11170 233 + . alignment_id 3 ; Query Lalb_14657 ; Align 10841 104 111 ; Align 10958 141 36 ; Align 10997 153 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14657 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 222 Query range: 64 -> 139 Target range: 17818 -> 18156 65 : LeuIleValSerIleGlyLysAsnGluSerGluArgLeuPheProPheAlaVal<->Pro : 83 :!!:!:...:::||||||||||||||||||||||||:!!.!!|||||| !:!! ! IleLeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpVal 17819 : ATTTTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTC : 17876 84 : GlySerProLeuTyrValThrProTyrTyrGluIleAlaPhePheValGln >>>> Ta : 101 ..!! !||||||! :!!||||||||||||||||||...||| :::||| AsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln++ 17877 : AACTTGCCATTATCAATGACGCCATATTACgaaataactttttcattaCAGgt....... : 17932 102 : rget Intron 1 >>>> ValLeuValValTyrGluValGlyIleCysHisPheCysV : 114 110 bp |||||| !:!!|||.!.:!!|||:!: !!:!!|||||| ++ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysP 17933 : ..................aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgct : 18079 115 : alAspAsnIleLeuCysIleMetAsnLeuHisValAlaThrGlnPheArgIleLeuGlnT : 134 ||||||...|||||||||||||||||||||!.!|||||||||||||||:!!||||||| heAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnT 18080 : tcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAAT : 18139 135 : yrArgLeuSerAsnLeu : 139 |||||:!!:!!|||:!! yrArgMetAlaAsnMet 18140 : ACCGAATGGCGAATATG : 18156 vulgar: Lalb_14657 64 139 . KQ414828.1 17818 18156 + 222 M 18 54 G 0 3 M 18 54 5 0 2 I 0 106 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17819 18156 222 + . gene_id 4 ; sequence Lalb_14657 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17819 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17819 17929 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18156 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18156 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17819 18156 222 + . alignment_id 4 ; Query Lalb_14657 ; Align 17819 65 54 ; Align 17876 83 54 ; Align 18040 101 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14657 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 64 -> 139 Target range: 37450 -> 37985 65 : LeuIleValSerIleGlyLysAsnGluSerGluArgLeuPheProPheAlaVal<->Pro : 83 ::: ...!:!:!!|||||||||||||||!!:||| ! ! !!:!! !:!! ! ! IleSerAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 37451 : atttcagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 37508 84 : GlySerProLeuTyrValThrProTyrTyrGluIleAlaPhePheValGln >>>> Ta : 101 ! ! !||||||! !:!!||||||||||||||||||...::!.!.:!!||| AspLeuProLeuSerIleThrProTyrTyrGluIleThrTyrIleIleGln++ 37509 : GATCTACCATTATCCATAACAccatattatgaaattacttACATAATACAGgt....... : 37564 102 : rget Intron 1 >>>> ValLeuValValTyrGluValGlyIleCysHisPheCysV : 114 307 bp !.!||| !||||||:!!|||.!! |||:!!.!!||| ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysP 37565 : ..................agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCt : 37908 115 : alAspAsnIleLeuCysIleMetAsnLeuHisValAlaThrGlnPheArgIleLeuGlnT : 134 ||| |||... |||::: |||||||||||| !||||||||||||||||||| heAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnT 37909 : ttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAAT : 37968 135 : yrArgLeuSerAsnLeu : 139 |||||:!!:!!|||:!! yrArgIleAlaAsnVal 37969 : ACAGAATTGCCAATGTG : 37985 vulgar: Lalb_14657 64 139 . KQ414828.1 37450 37985 + 170 M 18 54 G 0 3 M 18 54 5 0 2 I 0 303 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37451 37985 170 + . gene_id 5 ; sequence Lalb_14657 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37451 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37451 37561 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 37985 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 37985 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37451 37985 170 + . alignment_id 5 ; Query Lalb_14657 ; Align 37451 65 54 ; Align 37508 83 54 ; Align 37869 101 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14657 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 155 -> 210 Target range: 22899 -> 23064 156 : ThrGluAsnSerTyrMetThrPheLysArgCysValGlnHisHisLysThrLeuIleAla : 175 :!!|||!!.!!!|||!!:! !||||||!.!|||:!!|||!!.|||:!!.!!||||||! ! SerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGlu 22900 : TCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAA : 22957 176 : TyrCysAsnLysLeuGluGluValPheAsnLeuIleValPheAlaGlnIlePheIlePhe : 195 !:!||| ! !|||||||||||||||!..:!!||||||.!!!.!|||:!!.!.!!:! ! PheCysAlaThrLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMetSer 22958 : TTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCTAATGTCT : 23017 196 : SerMetLeuIleCysLeuAsnGlyLeuGlnIleLeuValValSer : 210 |||!!:|||||||||!!!! !|||! !|||:!!|||:!!|||||| SerIleLeuIleCysPheIleGlyTyrGlnValLeuLeuValSer 23018 : AGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGGTGAGT : 23064 vulgar: Lalb_14657 155 210 . KQ414828.1 22899 23064 + 150 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22900 23064 150 + . gene_id 6 ; sequence Lalb_14657 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 22900 23064 . + . KQ414828.1 exonerate:protein2genome:local exon 22900 23064 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22900 23064 150 + . alignment_id 6 ; Query Lalb_14657 ; Align 22900 156 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14657 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 155 -> 210 Target range: 38042 -> 38207 156 : ThrGluAsnSerTyrMetThrPheLysArgCysValGlnHisHisLysThrLeuIleAla : 175 :!!|||!!.!!!|||!!:! !||||||!.!|||:!!|||!!.|||:!!.!!||||||! ! SerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGlu 38043 : TCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAA : 38100 176 : TyrCysAsnLysLeuGluGluValPheAsnLeuIleValPheAlaGlnIlePheIlePhe : 195 !:!||| ! !|||||||||||||||!..:!!|||!.!.!!!.!|||:!!.!.!!:||| PheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnValLeuMetPhe 38101 : TTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCTAATGTTT : 38160 196 : SerMetLeuIleCysLeuAsnGlyLeuGlnIleLeuValValSer : 210 |||!!:|||||||||!!! !! !! !||| !|||:!!|||||| SerIleLeuIleCysPheValValTyrGlnAlaLeuLeuValSer 38161 : AGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGGTGAGT : 38207 vulgar: Lalb_14657 155 210 . KQ414828.1 38042 38207 + 141 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38043 38207 141 + . gene_id 7 ; sequence Lalb_14657 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38043 38207 . + . KQ414828.1 exonerate:protein2genome:local exon 38043 38207 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38043 38207 141 + . alignment_id 7 ; Query Lalb_14657 ; Align 38043 156 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14657 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 64 -> 139 Target range: 22307 -> 22842 65 : LeuIleValSerIleGlyLysAsnGluSerGluArgLeuPheProPheAlaVal<->Pro : 83 ::::::...!:!:!!|||||||||||||||!!:||| ! ! !!:!! !:!! ! ! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 22308 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 22365 84 : GlySerProLeuTyrValThrProTyrTyrGluIleAlaPhePheValGlnValLeuVal : 103 ! ! !||||||! !|||||||||||||||||||||...::!.!.:!!||||||||| ! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 22366 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 22425 104 : ValTyrGlu{V} >>>> Target Intron 1 >>>> {al}GlyIleCysHisPhe : 112 :!!!:!..!{:} 307 bp {!!}.!! |||:!!.!! IlePheSer{I}+- ++{le}SerAlaCysTyrLeu 22426 : ATTTTCTCA{A}gg.........................ag{TT}AGCGCGTGTTACCTT : 22759 113 : CysValAspAsnIleLeuCysIleMetAsnLeuHisValAlaThrGlnPheArgIleLeu : 132 ||| ||| |||... |||::: |||||||||||| !||||||||||||||| CysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeu 22760 : TGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTA : 22819 133 : GlnTyrArgLeuSerAsnLeu : 139 |||||||||:!!:!!|||:!! GlnTyrArgIleAlaAsnVal 22820 : CAATACAGAATTGCCAATGTG : 22842 vulgar: Lalb_14657 64 139 . KQ414828.1 22307 22842 + 139 M 18 54 G 0 3 M 24 72 S 0 1 5 0 2 I 0 303 3 0 2 S 1 2 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22308 22842 139 + . gene_id 8 ; sequence Lalb_14657 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22308 22437 . + . KQ414828.1 exonerate:protein2genome:local exon 22308 22437 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22438 22439 . + . intron_id 1 ; splice_site "GG" KQ414828.1 exonerate:protein2genome:local intron 22438 22744 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22743 22744 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22745 22842 . + . KQ414828.1 exonerate:protein2genome:local exon 22745 22842 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22308 22842 139 + . alignment_id 8 ; Query Lalb_14657 ; Align 22308 65 54 ; Align 22365 83 72 ; Align 22747 108 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14647 [mRNA] [translate_table: standard] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 53 -> 103 Target range: 1222505 -> 1222355 54 : TyrAspThrGluTrpTyrSerIleProValProValGlnLysPheIleIleLeuIl : 72 |||! !:!!:!!||||||..!:!!|||||| !! !||||||!!.||| ! !!! TyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTyrThrMe 1222505 : TACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTACACGAT : 1222451 73 : eMetLysArgSerLeuGlnProCysIleLeuThrLeuGlyLysMetTyrProProS : 91 :...! !||||||:!!!:!||||||||||||||| !||| !:!!:!! ! !! tGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisGluMetA 1222450 : GCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATGAGATGA : 1222394 92 : erCysGluGlyPheAlaMetValLysLeuAsnAsnVal : 103 :! !|||.!!|||!.!!!:||| !|||! :!! snIleGluSerPheGlyIleValCysAsnAsnMetIle 1222393 : ACATCGAGAGTTTCGGAATAGTATGTAATAATATGATA : 1222356 vulgar: Lalb_14647 53 103 . KQ414851.1 1222505 1222355 - 107 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222356 1222505 107 - . gene_id 1 ; sequence Lalb_14647 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1222356 1222505 . - . KQ414851.1 exonerate:protein2genome:local exon 1222356 1222505 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222356 1222505 107 - . alignment_id 1 ; Query Lalb_14647 ; Align 1222506 54 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14647 [mRNA] [translate_table: standard] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 53 -> 130 Target range: 1228545 -> 1228309 54 : TyrAspThrGluTrpTyrSerIleProValProValGlnLysPheIleIleLeuIl : 72 |||..!:!! !||||||!.!:!! !!!.! ! !!|||::! ! ||| !:!!!! TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 73 : eMetLysArgSerLeuGlnProCysIleLeuThrLeuGlyLysMetTyrProProS : 91 :...! !|||:!!|||:!!||||||||||||||| !||| !:!!||| ! !! tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 92 : erCysGluGlyPheAlaMetValLys-----LeuAsnAsnValLeuHisGlyGlnT : 108 :! |||..!||||||! |||:::#####! !!..:!!:!!||| ! !... snMetGluAsnPheAlaAsnValArg#####CysThrAspIleLeuSerThrSerV 1228433 : ACATGGAGAACTTTGCAAACGTTCGTAACATTGTACAGATATCCTGTCTACATCTG : 1228378 109 : yrArgLeuPheLeuGluIleAsnPheSerPhePheLeuAspMetGlnHisValAsp : 126 ! ||| ... :!! !! !! |||! !|||!!:|||:!!||| !! alGlyLeuThrPheIleAsnAspAsnIleSerPheSerAspIleGlnAsnValHis 1228377 : TCGgattaacttttattaacgATAACATTTCATTTTCAGACATTCAAAACGTGCAT : 1228324 127 : ValValLeuHis : 130 |||||||||||| ValValLeuHis 1228323 : GTCGTACTTCAC : 1228310 vulgar: Lalb_14647 53 130 . KQ414851.1 1228545 1228309 - 105 M 46 138 F 0 5 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228310 1228545 105 - . gene_id 2 ; sequence Lalb_14647 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228310 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228310 1228545 . - . insertions 0 ; deletions 0 ; frameshifts 5 KQ414851.1 exonerate:protein2genome:local similarity 1228310 1228545 105 - . alignment_id 2 ; Query Lalb_14647 ; Align 1228546 54 138 ; Align 1228403 100 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14672 [mRNA] [translate_table: standard] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 362 Query range: 0 -> 140 Target range: 4462 -> 4042 1 : AspValLeuGlnArgLeuIleGluGluMetLysAlaSerLeuLysAsnAlaGlnSerTyrGl : 21 |||..!||||||!:!|||||||||||||||||| !!!!! !:!!!..|||:!! !!||||| AspThrLeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGl 4462 : GACACGTTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGA : 4402 22 : uArgAsnIleTyrGlnArgTyrValAspThrTyrTyrLysPheTyrGlyLeuThrValMetT : 42 ||||:!!:!!!:!||||||||||||:!!! !:!: |||||| ! ! | uArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerT 4401 : AAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCAT : 4339 43 : rpSerTyrValSerProValValValValValGlySerIlePheLeuProGlnProPhePro : 62 ||! !|||:!!!!! !!:!!:!!:!!|||:!!||||||:!:.!!:!! !!.!.||||||||| rpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPhePro 4338 : GGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCA : 4279 63 : ThrValSerGluTyrProPheArgValAspTyrGluProValArgIleIleIlePheValHi : 83 ||| !:!!! !|||||||||! !|||:!!!:!||||||:!!|||! !|||||||||:!!|| ThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHi 4278 : ACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCA : 4216 84 : sGlnAlaIleAlaGlyPheGlnCysSerAlaAlaValSerLeuAsnMetPheAlaAlaLeuL : 104 ||||:!!.!!!.!|||.!.||||||:!!||| !!.!|||:!!|||:!!.!!:!!||||||| sGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeuL 4215 : CCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTGT : 4153 105 : euLeuLeuTyrThrAlaAlaLysTyrGluIleLeuMetIleAspMetArgArgAlaThrSer : 124 ||||||||!:!|||.!!|||::::::||||||||||||! !!::!!|||!.!!.!!.!..! euLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAsp 4152 : TATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGAT : 4093 125 : ValAspAlaLeuIleAlaCysValGluLysTyrGlnAlaValAsnArg : 140 :!!!!:.!!|||||| ! !!:!!:!!||||||..!.!!|||...||| IleGluThrLeuIleLysSerMetLysLysTyrSerThrValArgArg 4092 : ATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: Lalb_14672 0 140 . LHQN01020543.1 4462 4042 - 362 M 140 420 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 4462 362 - . gene_id 1 ; sequence Lalb_14672 ; gene_orientation . LHQN01020543.1 exonerate:protein2genome:local cds 4043 4462 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4462 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 4462 362 - . alignment_id 1 ; Query Lalb_14672 ; Align 4463 1 420 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14672 [mRNA] [translate_table: standard] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 344 Query range: 206 -> 343 Target range: 4453 -> 4042 207 : MetArgLeuIleGluHisMetThrAlaSerLeuLysAsnAlaLysSerTyrGluArgAsnVa : 227 ..!!:!|||||||||.!.|||! ! !!!!! !:!!!..|||||| !!|||||||||:!!|| GlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAspVa 4453 : CAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGACGT : 4393 228 : lTyrGlnArgTyrValAsnThrTyrTyrArgTyrTyrGlyLeuThrValMetTrpAsnTyrM : 248 |!:!|||||||||||||||! !:!: :::||| ! ! ||| !|||: lPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheTyrL 4392 : CTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTTACT : 4330 249 : etCysThrMetValValIleValAlaSerIlePheLeuProGlnProPheProThrIleSer : 268 !: .!!!!::!!:!!:!!:!!!.!|||:!:.!!:!! !!.!.||||||||||||! !:!! euThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPheProThrAsnAla 4329 : TAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACCAACGCA : 4270 269 : GluTyrProPheAspValTyrTyrGluProValArgThrIleIlePheLeuHisGlnAlaPh : 289 ! !||||||||| !||| !!!:!||||||:!!|||!:!|||||||||:!!||||||:!!|| ValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHisGlnSerPh 4269 : GTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCACCAATCGTT : 4207 290 : eValGlyPheGlnCysSerAlaSerValSerLeuAsnMetPheAlaAlaLeuLeuLeuLeuP : 310 |||||||.!.||||||:!!||| !!.!|||:!!|||:!!.!!:!!|||||||||||||||| eValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeuLeuLeuLeuP 4206 : CGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTGTTATTGCTAT : 4144 311 : heAlaAlaAlaArgTyrGluIleLeuMetIleAspLeuArgGluSerThrSerIleAspAla : 330 ||.!!.!!||||||:::||||||||||||! !!:||||||.!. !!.!..!|||!!:.!! heThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAspIleGluThr 4143 : TCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGATATCGAAACA : 4084 331 : LeuThrMetCysValLysLysTyrTyrAlaValThrArg : 343 |||! !! ! !!:!!|||||||||! .!!||| !||| LeuIleLysSerMetLysLysTyrSerThrValArgArg 4083 : CTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: Lalb_14672 206 343 . LHQN01020543.1 4453 4042 - 344 M 137 411 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 4453 344 - . gene_id 2 ; sequence Lalb_14672 ; gene_orientation . LHQN01020543.1 exonerate:protein2genome:local cds 4043 4453 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4453 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 4453 344 - . alignment_id 2 ; Query Lalb_14672 ; Align 4454 207 411 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14672 [mRNA] [translate_table: standard] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 358 -> 410 Target range: 2022 -> 1793 359 : ThrIleLeuTyrSerSerIleAspLeuValLeuCysGlyLeuAsnIleIleGly >>>> T : 377 |||:!!:!! !!!!!!:!:! ! !|||!!!..!|||:!!|||:!:|||||| ThrValIleThrCysThrValAlaCysValPheAlaGlyIleAsnLeuIleGly++ 2022 : ACGGTAATCACATGCACTGTGGCGTGTGTATTTGCTGGAATTAATTTGATCGGAgt...... : 1966 378 : arget Intron 1 >>>> ArgGlnProPheAlaIleLysLeuGlnPheIlePheMetAl : 390 73 bp !:!||||||||||||:!:||| !||||||:!! !:!!:: ++LysGlnProPheAlaValLysAlaGlnPheLeuThrValSe 1965 : ...................agAAACAACCGTTCGCTGTGAAAGCTCAGTTTCTTACTGTGAG : 1856 391 : aGlyThrIleLeuMetGlnValLeuMetCysAlaLeuProAlaAspValLeuIleAsnMet : 410 !|||||| !|||:!!:!!||||||||||||:!!|||||||||||| !||||||:!!||| rGlyThrAlaLeuLeuGluValLeuMetCysSerLeuProAlaAspHisLeuIleAspMet 1855 : TGGAACCGCTTTGCTGGAAGTGCTTATGTGTTCACTACCAGCTGACCATTTGATAGATATG : 1794 vulgar: Lalb_14672 358 410 . LHQN01020543.1 2022 1793 - 125 M 18 54 5 0 2 I 0 69 3 0 2 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 1794 2022 125 - . gene_id 3 ; sequence Lalb_14672 ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 1969 2022 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1969 2022 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 1967 1968 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 1896 1968 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 1896 1897 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 1794 1895 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1794 1895 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 1794 2022 125 - . alignment_id 3 ; Query Lalb_14672 ; Align 2023 359 54 ; Align 1896 377 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14672 [mRNA] [translate_table: standard] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 173 -> 207 Target range: 1895 -> 1793 174 : ArgGlnProPheIleValLysLeuGlnPheValValLeuSerTrpThrGlyLeuMetGluVa : 194 !:!||||||||| !|||||| !||||||:!!..!:!!||| ! |||!.!|||:!!||||| LysGlnProPheAlaValLysAlaGlnPheLeuThrValSerGlyThrAlaLeuLeuGluVa 1895 : AAACAACCGTTCGCTGTGAAAGCTCAGTTTCTTACTGTGAGTGGAACCGCTTTGCTGGAAGT : 1835 195 : lPheMetCysAlaLeuProAlaAspArgLeuIleAsnMet : 207 |.!!||||||:!!||||||||||||!.!||||||:!!||| lLeuMetCysSerLeuProAlaAspHisLeuIleAspMet 1834 : GCTTATGTGTTCACTACCAGCTGACCATTTGATAGATATG : 1794 vulgar: Lalb_14672 173 207 . LHQN01020543.1 1895 1793 - 112 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 1794 1895 112 - . gene_id 4 ; sequence Lalb_14672 ; gene_orientation . LHQN01020543.1 exonerate:protein2genome:local cds 1794 1895 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1794 1895 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 1794 1895 112 - . alignment_id 4 ; Query Lalb_14672 ; Align 1896 174 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14673 [mRNA] [translate_table: standard] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 506 Query range: 0 -> 234 Target range: 5294 -> 4042 1 : MetPheGluAsnValThrProGluLysAlaMetValPheValArgLeuSerIleAlaLeuIl : 21 |||!!.:!! !! !!:!||||||!:!|||!!: !.!!|||!.!:!!! !! |||!!!! MetLeuLysTyrProSerProGluArgAlaIleSerLeuValHisValIleThrAlaPheTh 5294 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCACGTTATCACGGCTTTTAC : 5234 22 : eCysGlyTrpProLeuProSerThrAlaThrLysAlaGlnValLeuCysTyrArgIleLeuL : 42 !||| !!|||||||||||||||||||||||||||:!!! !|||||| !:!!:!||||||! rCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuA 5233 : CTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGA : 5171 43 : ysValLeuCysGlyIleSerAlaIleGlyLeuPheLeuProValLeuAsnAlaAlaIlePhe : 62 :! !!!! !:!!!:!|||:!!! !||||||||||||:!!||| !!||| ! ! ! rgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHisVal 5170 : GATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTG : 5111 63 : TyrTyrGlyAspAlaThrHisPheSerLeuAlaSerIleMetIleIleAlaSerAlaHisLe : 83 :!! ..!|||||| !:!! !!:!! !|||:!! !:!!! :!!||| ......:: HisArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGlnIl 5110 : CATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCctcgtgcaaat : 5048 84 : uLeuThrGlnValLeuIleAsnSerPheGlnHisAspGlnTrpGln >>>> Target In : 99 :... |||..!!!!:!! !! ! !|||:!!|||!!.!::||| 550 ePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGln++ 5047 : atttttccagacTTTCGTTTGCATCGGCCAATACGATCATTTTCAGgt.............. : 4998 100 : tron 1 >>>> ArgLeuIleGluHisMetThrAlaSerLeuLysAsnAlaLysSerTyrG : 115 bp !:!|||||||||.!.|||! ! !!!!! !:!!!..|||||| !!|||| ++LysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrG 4997 : ...........agAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACG : 4402 116 : luArgAsnValTyrGlnArgTyrValAsnThrTyrCysArgPheTyrGlyLeuThrValIle : 135 |||||:!!|||!:!|||||||||||||||! !:!: |||||| ! ! ! luArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSer 4401 : AAAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCA : 4342 136 : TrpTyrTyrValCysAlaLeuValIleIleValAlaSerIlePheLeuProGlnProPhePr : 156 |||!:!|||:!! |||:!!:!!!!::!!:!!!.!|||:!:.!!:!! !!.!.|||||||| TrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPhePr 4341 : TGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCC : 4279 157 : oThrIleSerGluTyrProPheAspValTyrTyrGluProValArgThrIleIlePheLeuH : 177 ||||! !:!!! !||||||||| !||| !!!:!||||||:!!|||!:!|||||||||:!!| oThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetH 4278 : AACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGC : 4216 178 : isGlnAlaPheValGlyPheGlnCysSerAlaSerValSerLeuAsnMetPheAlaAlaLeu : 197 |||||:!!|||||||||.!.||||||:!!||| !!.!|||:!!|||:!!.!!:!!|||||| isGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeu 4215 : ACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTG : 4156 198 : LeuLeuLeuPheAlaAlaAlaArgTyrGluIleLeuMetIleAspLeuArgGluSerThrSe : 218 ||||||||||||.!!.!!||||||:::||||||||||||! !!:||||||.!. !!.!.. LeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAs 4155 : TTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGA : 4093 219 : rIleAspAlaLeuThrMetCysValLysLysTyrTyrAlaValThrArg : 234 !|||!!:.!!|||! !! ! !!:!!|||||||||! .!!||| !||| pIleGluThrLeuIleLysSerMetLysLysTyrSerThrValArgArg 4092 : TATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: Lalb_14673 0 234 . LHQN01020543.1 5294 4042 - 506 M 98 294 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 5294 506 - . gene_id 1 ; sequence Lalb_14673 ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 5001 5294 . - . LHQN01020543.1 exonerate:protein2genome:local exon 5001 5294 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 4999 5000 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 4451 5000 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 4451 4452 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 4043 4450 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4450 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 5294 506 - . alignment_id 1 ; Query Lalb_14673 ; Align 5295 1 294 ; Align 4451 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14673 [mRNA] [translate_table: standard] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 249 -> 304 Target range: 2022 -> 1784 250 : ThrIleLeuTyrSerSerLeuAspLeuValLeuCysGlyLeuAsnIleIleGly >>>> T : 268 |||:!!:!! !!!!!!:!!! ! !|||!!!..!|||:!!|||:!:|||||| ThrValIleThrCysThrValAlaCysValPheAlaGlyIleAsnLeuIleGly++ 2022 : ACGGTAATCACATGCACTGTGGCGTGTGTATTTGCTGGAATTAATTTGATCGGAgt...... : 1966 269 : arget Intron 1 >>>> ArgGlnProPheAlaIleLysLeuGlnPheIlePheMetAl : 281 73 bp !:!||||||||||||:!:||| !||||||:!! !:!!:: ++LysGlnProPheAlaValLysAlaGlnPheLeuThrValSe 1965 : ...................agAAACAACCGTTCGCTGTGAAAGCTCAGTTTCTTACTGTGAG : 1856 282 : aGlyThrIleLeuMetGlnValLeuMetCysAlaLeuProAlaAspValLeuMetAsnMetS : 302 !|||||| !|||:!!:!!||||||||||||:!!|||||||||||| !|||!!::!!||| rGlyThrAlaLeuLeuGluValLeuMetCysSerLeuProAlaAspHisLeuIleAspMetV 1855 : TGGAACCGCTTTGCTGGAAGTGCTTATGTGTTCACTACCAGCTGACCATTTGATAGATATGG : 1793 303 : erThrAsp : 304 !!:!||| alSerAsp 1792 : TAAGTGAT : 1785 vulgar: Lalb_14673 249 304 . LHQN01020543.1 2022 1784 - 125 M 18 54 5 0 2 I 0 69 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 1785 2022 125 - . gene_id 2 ; sequence Lalb_14673 ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 1969 2022 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1969 2022 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 1967 1968 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 1896 1968 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 1896 1897 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 1785 1895 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1785 1895 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 1785 2022 125 - . alignment_id 2 ; Query Lalb_14673 ; Align 2023 250 54 ; Align 1896 268 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14671 [mRNA] [translate_table: standard] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 503 Query range: 0 -> 234 Target range: 5294 -> 4042 1 : MetPheGluAsnValMetProGluLysAlaMetValPheIleArgHisSerValValLeuIl : 21 |||!!.:!! !! !! ||||||!:!|||!!: !.!!:!!!.! !! !..!!.!!!!! MetLeuLysTyrProSerProGluArgAlaIleSerLeuValHisValIleThrAlaPheTh 5294 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCACGTTATCACGGCTTTTAC : 5234 22 : eCysGlyTrpProLeuProSerMetAlaThrLysAlaGlnValLeuCysTyrArgIleLeuL : 42 !||| !!|||||||||||||||! !|||||||||:!!! !|||||| !:!!:!||||||! rCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuA 5233 : CTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGA : 5171 43 : ysValLeuSerAlaIleSerAlaLeuAlaLeuPheLeuProValLeuAsnAlaAlaIleLeu : 62 :! !!!! ! !:!!!:!||||||!.!||||||||||||:!!||| !!||| ! !:!! rgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHisVal 5170 : GATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTG : 5111 63 : HisPheGlyAspProThrAsnPheSerLysAlaValIleMetAlaIleAlaCysAlaHisVa : 83 ||| ..!||| !! !||| !!:!!||||||!.! !:!!.!!:!!||| ......:: HisArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGlnIl 5110 : CATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCctcgtgcaaat : 5048 84 : lLeuThrGlnIleValValSerSerIleGlnHisAspArgTrpGln >>>> Target In : 99 :... ||| ! !!|||!!!! ! !|||:!!|||!.!!::||| 550 ePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGln++ 5047 : atttttccagacTTTCGTTTGCATCGGCCAATACGATCATTTTCAGgt.............. : 4998 100 : tron 1 >>>> ArgLeuIleGluHisMetThrAlaSerLeuLysAsnAlaLysSerTyrG : 115 bp !:!|||||||||.!.|||! ! !!!!! !:!!!..|||||| !!|||| ++LysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrG 4997 : ...........agAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACG : 4402 116 : luArgAsnValTyrGlnArgTyrValAspSerTyrCysArgPheTyrAlaLeuThrValMet : 135 |||||:!!|||!:!||||||||||||:!!!.!:!: |||||| ! ! luArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSer 4401 : AAAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCA : 4342 136 : TrpPheTyrMetSerProIleValPheValValGlyThrIlePheLeuProGlnProPhePr : 156 |||||||||:!:!!! !!|||:!!.!.|||:!!|||!:!:!:.!!:!! !!.!.|||||||| TrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPhePr 4341 : TGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCC : 4279 157 : oAlaIleSerGluTyrProPheArgValAsnTyrGluProValLysThrIleIleIleLeuH : 177 |.!!! !:!!! !|||||||||! !||||||!:!||||||:!!!:!!:!||||||.!!:!!| oThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetH 4278 : AACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGC : 4216 178 : isGlnAlaLeuValGlyPheGlnCysSerAlaSerValSerMetAsnMetPheAlaAlaLeu : 197 |||||:!!!!!||||||.!.||||||:!!||| !!.!|||||||||:!!.!!:!!|||||| isGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeu 4215 : ACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTG : 4156 198 : LeuLeuLeuTyrValAlaAlaArgTyrGluIleLeuMetIleAspLeuArgGluSerThrSe : 218 |||||||||!:!..!.!!||||||:::||||||||||||! !!:||||||.!. !!.!.. LeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAs 4155 : TTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGA : 4093 219 : rIleAspAlaLeuThrMetCysValLysGluTyrTyrSerValThrArg : 234 !|||!!:.!!|||! !! ! !!:!!|||:!!|||! !!!||| !||| pIleGluThrLeuIleLysSerMetLysLysTyrSerThrValArgArg 4092 : TATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: Lalb_14671 0 234 . LHQN01020543.1 5294 4042 - 503 M 98 294 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 5294 503 - . gene_id 1 ; sequence Lalb_14671 ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 5001 5294 . - . LHQN01020543.1 exonerate:protein2genome:local exon 5001 5294 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 4999 5000 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 4451 5000 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 4451 4452 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 4043 4450 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4450 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 5294 503 - . alignment_id 1 ; Query Lalb_14671 ; Align 5295 1 294 ; Align 4451 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14671 [mRNA] [translate_table: standard] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 249 -> 301 Target range: 2022 -> 1793 250 : ThrIleLeuTyrSerSerIleAspLeuValLeuCysGlyLeuAsnIleIleGly >>>> T : 268 |||:!!:!! !!!!!!:!:! ! !|||!!!..!|||:!!|||:!:|||||| ThrValIleThrCysThrValAlaCysValPheAlaGlyIleAsnLeuIleGly++ 2022 : ACGGTAATCACATGCACTGTGGCGTGTGTATTTGCTGGAATTAATTTGATCGGAgt...... : 1966 269 : arget Intron 1 >>>> ArgGlnProValValValLysLeuGlnPheIleThrLeuSe : 281 73 bp !:!|||||| !!!.!|||||| !||||||:!!|||:!!|| ++LysGlnProPheAlaValLysAlaGlnPheLeuThrValSe 1965 : ...................agAAACAACCGTTCGCTGTGAAAGCTCAGTTTCTTACTGTGAG : 1856 282 : rTrpThrAlaMetMetGluValPheMetCysAlaLeuProAlaAspThrLeuIleAsnMet : 301 | ! ||||||:!!:!!||||||.!!||||||:!!|||||||||||| !||||||:!!||| rGlyThrAlaLeuLeuGluValLeuMetCysSerLeuProAlaAspHisLeuIleAspMet 1855 : TGGAACCGCTTTGCTGGAAGTGCTTATGTGTTCACTACCAGCTGACCATTTGATAGATATG : 1794 vulgar: Lalb_14671 249 301 . LHQN01020543.1 2022 1793 - 120 M 18 54 5 0 2 I 0 69 3 0 2 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 1794 2022 120 - . gene_id 2 ; sequence Lalb_14671 ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 1969 2022 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1969 2022 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 1967 1968 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 1896 1968 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 1896 1897 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 1794 1895 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1794 1895 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 1794 2022 120 - . alignment_id 2 ; Query Lalb_14671 ; Align 2023 250 54 ; Align 1896 268 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14669 [mRNA] [translate_table: standard] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 507 Query range: 5 -> 234 Target range: 5279 -> 4042 6 : ThrProGluLysAlaIleThrPheValArgLeuSerIleAlaLeuIleCysGlyTrpProGl : 26 !:!||||||!:!||||||:!!.!!|||!.!:!!! !! |||!!!! !||| !!||||||! SerProGluArgAlaIleSerLeuValHisValIleThrAlaPheThrCysCysTrpProLe 5279 : AGTCCAGAAAGAGCCATCTCCCTTGTCCACGTTATCACGGCTTTTACCTGCTGTTGGCCTCT : 5219 27 : nProSerValSerThrLysAlaGlnValLeuCysSerArgIleSerLysValLeuAlaIleI : 47 ||||||..!:!!||||||:!!! !|||||| ! !!:!||| !!:! !!!! !:!!: uProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuArgSerPheLeuLeuL 5218 : TCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGAGATCTTTCCTGCTTT : 5156 48 : leSerAlaLeuAlaLeuPheLeuProValLeuSerAlaThrIleLeuHisSerGlyAspAla : 67 !!!:!||||||!.!||||||||||||:!!|||! !||| ! !:!!||| !!..!|||||| euAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHisValHisArgAsnAspAla 5155 : TAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTGCATCGAAACGACGCC : 5096 68 : AsnValPheSerLysAlaAlaPheMetAlaIleAlaThrGlyGlnValPheIleTyrAlaLe : 88 .!. ! !!:!!|||||||||! !:!!.!!:!!||| |||:::|||... ..!!! GluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPh 5095 : GAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCctcgtgcaaatatttttccagacTTT : 5033 89 : uLeuThrAlaIleGlnHisAspArgPheGln >>>> Target Intron 1 >>>> Ar : 99 !:!! ! ! !|||:!!|||!.!|||||| 550 bp !: eValCysIleGlyGlnTyrAspHisPheGln++ ++Ly 5032 : CGTTTGCATCGGCCAATACGATCATTTTCAGgt.........................agAA : 4450 100 : gLeuValGluAsnIleThrValSerIleLysAspAlaLysSerTyrGluArgAsnValTyrG : 120 !|||:!!|||.!.!!:! !:!!!!! !:!! |||||| !!|||||||||:!!|||!:!| sLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPheG 4449 : ACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGACGTCTTCC : 4387 121 : lnArgTyrValAspThrTyrTyrLysPheTyrGlyLeuThrValMetTrpTyrTyrMetSer : 140 |||||||||||:!!! !:!: |||||| ! ! |||!:!|||:!:!!! lnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheTyrLeuThr 4386 : AACGATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTTACTTAACA : 4327 141 : AlaMetIleValIleValGlyThrIlePheLeuProGlnProPheProThrIleSerGluTy : 161 |||!!:|||:!!:!!:!!|||!:!:!:.!!:!! !!.!.||||||||||||! !:!!! !|| AlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPheProThrAsnAlaValTy 4326 : GCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACCAACGCAGTATA : 4264 162 : rProPheAspValAspTyrGluProValArgIleMetIlePheIleHisGlnAlaIleValG : 182 ||||||| !|||:!!!:!||||||:!!|||! !!!:||||||!!:||||||:!!.!!|||| rProPheProValAsnPheGluProLeuArgSerIleIlePheMetHisGlnSerPheValG 4263 : TCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCACCAATCGTTCGTTG : 4201 183 : lyPheGlnCysSerAlaSerValSerLeuAsnMetPheAlaAlaLeuLeuIleLeuAsnAla : 202 ||.!.||||||:!!||| !!.!|||:!!|||:!!.!!:!!|||||||||:!:||| !.!! lyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeuLeuLeuLeuPheThr 4200 : GCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTGTTATTGCTATTCACT : 4141 203 : AlaAlaArgTyrGluMetLeuMetIleAspLeuLysGluAlaAsnSerValAspAlaLeuIl : 223 .!!||||||:::|||:::||||||! !!:|||!:!.!.!.!|||..!:!!!!:.!!||||| ThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAspIleGluThrLeuIl 4140 : ACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGATATCGAAACACTGAT : 4078 224 : eValCysValLysLysTyrHisAlaValThrArg : 234 | ! !!:!!||||||||| .!!||| !||| eLysSerMetLysLysTyrSerThrValArgArg 4077 : TAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: Lalb_14669 5 234 . LHQN01020543.1 5279 4042 - 507 M 93 279 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 5279 507 - . gene_id 1 ; sequence Lalb_14669 ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 5001 5279 . - . LHQN01020543.1 exonerate:protein2genome:local exon 5001 5279 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 4999 5000 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 4451 5000 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 4451 4452 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 4043 4450 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4450 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 5279 507 - . alignment_id 1 ; Query Lalb_14669 ; Align 5280 6 279 ; Align 4451 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14669 [mRNA] [translate_table: standard] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 247 Query range: 245 -> 354 Target range: 2034 -> 1552 246 : IleAlaValGlyThrValLeuLeuSerSerMetLysIleValLeuCysGlyLeuAsnIleIl : 266 ::: ||||||||||||:!! !!!!!!!:!! ! !|||!!!..!|||:!!|||:!:|| LeuHisValGlyThrValIleThrCysThrValAlaCysValPheAlaGlyIleAsnLeuIl 2034 : ttgcacgTTGGTACGGTAATCACATGCACTGTGGCGTGTGTATTTGCTGGAATTAATTTGAT : 1974 267 : eGly >>>> Target Intron 1 >>>> ArgThrSerIleValIleLysLeuGlnPh : 277 |||| 73 bp !:! ! !!.!!!.!:!:||| !||||| eGly++ ++LysGlnProPheAlaValLysAlaGlnPh 1973 : CGGAgt.........................agAAACAACCGTTCGCTGTGAAAGCTCAGTT : 1868 278 : eMetAlaLeuSerTrpThrAlaLeuMetGluValPheMetCysAlaLeuProAlaAspAlaL : 298 |:!:.!!:!!||| ! |||||||||:!!||||||.!!||||||:!!|||||||||||| !| eLeuThrValSerGlyThrAlaLeuLeuGluValLeuMetCysSerLeuProAlaAspHisL 1867 : TCTTACTGTGAGTGGAACCGCTTTGCTGGAAGTGCTTATGTGTTCACTACCAGCTGACCATT : 1805 299 : euIleAsnVal >>>> Target Intron 2 >>>> SerThrAsnAlaValArgSerV : 309 |||||:!!:!! 82 bp ||| !||| !:!!!:!.!!: euIleAspMet++ ++SerGluAsnIleMetGlnGlyI 1804 : TGATAGATATGgt.........................agAGCGAGAACATAATGCAAGGAA : 1690 310 : alTyrGluSerThrTrpTyrAspGlnValLeuSerValGlnLysThrValLeuHisIleLeu : 329 !!|||||||||! !||||||!!:!:! |||...:::||||||::!..!:!!! !!!:||| leTyrGluSerLysTrpTyrGluArgSerLeuLysIleGlnLysSerThrValLeuMetLeu 1689 : TATATGAATCAAAATGGTACGAACGAtctctaaaaattcaaaagtcTACAGTCCTCATGTTG : 1630 330 : ValProGlnGluProMetAlaIleSerValLysValPheIleProAlaLeuSerLeuGluTy : 350 ..!||||||...|||:!!.!!:!!!.!:!!||| !.!!||||||!..|||||||||...:: ThrProGlnSerProValThrValLysIleLysCysLeuIleProValLeuSerLeuAsnPh 1629 : ACTCCTCAATCTCCGGTGACAGTAAAAATCAAGTGCCTCATTCCAGttctttctttgaattt : 1567 351 : rTyrCysSerVal : 354 :|||||||||||| eTyrCysSerVal 1566 : ttactgCTCGGTA : 1553 vulgar: Lalb_14669 245 354 . LHQN01020543.1 2034 1552 - 247 M 22 66 5 0 2 I 0 69 3 0 2 M 34 102 5 0 2 I 0 78 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 1553 2034 247 - . gene_id 2 ; sequence Lalb_14669 ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 1969 2034 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1969 2034 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 1967 1968 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 1896 1968 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 1896 1897 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 1794 1895 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1794 1895 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 1792 1793 . - . intron_id 2 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 1712 1793 . - . intron_id 2 LHQN01020543.1 exonerate:protein2genome:local splice3 1712 1713 . - . intron_id 1 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 1553 1711 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1553 1711 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 1553 2034 247 - . alignment_id 2 ; Query Lalb_14669 ; Align 2035 246 66 ; Align 1896 268 102 ; Align 1712 302 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14650 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 263 -> 322 Target range: 292389 -> 292566 264 : GlnPheGluAspValGlyTyrTyrAlaTyrCysSerThrTrpTyrAsnLeuProGlnL : 283 ||| !...!!::!!!.!:!! !:!!||| !!!! !|||||||||||||||::!: GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 284 : ysLeuSerPheAspLeuValPheValValMetArgSerGluTyrProValHisLeuLy : 302 :! !:!! !|||:!!|||.!.|||:!! ! !!!!:!!:!!|||:!! ! |||! rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 303 : sAlaGlySerPhePheValIleAsnMetGluThrTyrMetSerIleValLysThrSer : 321 !||||||!.!.!.||||||:!!::::!!.!.|||!:! :!!:!! !:!!:!!!.! rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSerLys 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCAAAA : 292561 322 : Ile : 322 :!! Leu 292562 : CTA : 292566 vulgar: Lalb_14650 263 322 . KQ414889.1 292389 292566 + 110 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 292566 110 + . gene_id 1 ; sequence Lalb_14650 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292390 292566 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292566 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 292566 110 + . alignment_id 1 ; Query Lalb_14650 ; Align 292390 264 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14651 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 369 -> 428 Target range: 292389 -> 292566 370 : GlnPheGluAspValGlyTyrTyrAlaTyrCysSerThrTrpTyrAsnLeuProGlnL : 389 ||| !...!!::!!!.!:!! !:!!||| !!!! !|||||||||||||||::!: GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 390 : ysLeuSerPheAspLeuValPheValValMetArgSerGluTyrProValHisLeuLy : 408 :! !:!! !|||:!!|||.!.|||:!! ! !!!!:!!:!!|||:!! ! |||! rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 409 : sAlaGlySerPhePheValIleAsnMetGluThrTyrMetSerIleValLysThrSer : 427 !||||||!.!.!.||||||:!!::::!!.!.|||!:! :!!:!! !:!!:!!!.! rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSerLys 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCAAAA : 292561 428 : Ile : 428 :!! Leu 292562 : CTA : 292566 vulgar: Lalb_14651 369 428 . KQ414889.1 292389 292566 + 110 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 292566 110 + . gene_id 1 ; sequence Lalb_14651 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292390 292566 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292566 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 292566 110 + . alignment_id 1 ; Query Lalb_14651 ; Align 292390 370 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14657 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 339 Query range: 67 -> 208 Target range: 1707001 -> 1707706 68 : SerIleGlyLysAsnGluSerGluArgLeuPheProPheAlaVal<->ProGlySe : 85 |||||||||||||||||||||:!:|||:!!.!! ! !! ! !! !! !! SerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAspPh 1707002 : AgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGACTT : 1707056 86 : rProLeuTyrValThrProTyrTyrGluIleAlaPhePheValGln >>>> Tar : 101 !||| ! !:!!|||||||||||||||||| !||| !||| eProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707057 : TCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt........ : 1707106 102 : get Intron 1 >>>> ValLeuValValTyrGluValGlyIleCysHisPheC : 113 276 bp |||!!!:!!||| ! ||| !!||| !!:!!.!!| ++ValPheIleValMetTyrValCysIleSerTyrLeuC 1707107 : .................agGTTTTTATCGTAATGTACGTTTGCATAAGCTACCTTT : 1707416 114 : ysValAspAsnIleLeuCysIleMetAsnLeuHisValAlaThrGlnPheArgIle : 131 ||:!!||||||.!!||||||!!:!!:|||||||||..!|||||||||||||||||| ysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIle 1707417 : GTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATA : 1707470 132 : LeuGlnTyrArgLeuSerAsnLeuLysCysGluAsnIleGlyAspAspProLeu<- : 150 |||||||||||||||||||||:!! !!! !||| ! !!...||| ::: LeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAspLysIleSe 1707471 : TTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttc : 1707527 151 : >MetArgValProSerAlaThrGluAsnSerTyrMetThrPheLysArgCysValG : 168 :::...|||||| !:!!!!:.!.!!!||| ! !||||||!.!|||:!!| rLysLysThrProSerAsnSerAspGluCysTyrAlaLysPheLysAsnCysIleG 1707528 : gaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTC : 1707584 169 : lnHisHisLysThrLeuIleAlaTyrCysAsnLysLeuGluGluValPheAsnLeu : 186 ||!!.|||:!!.!!||||||! !|||||||||:!!|||:!!|||||||||..!||| lnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluValPheGlyLeu 1707585 : AACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGGTGTTCGGTTTA : 1707638 187 : IleValPheAlaGlnIlePheIlePheSerMetLeuIleCysLeuAsnGlyLeuGl : 205 .!!|||.!!||||||:!:!!.:!!||||||:!!|||!!:||||||:!!|||! ! PheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAspGlyTyrLe 1707639 : TTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGGATATTT : 1707695 206 : nIleLeuVal : 208 !:!::!!||| uValMetVal 1707696 : GGTGATGGTT : 1707706 vulgar: Lalb_14657 67 208 . KQ414915.1 1707001 1707706 + 339 M 15 45 G 0 3 M 18 54 5 0 2 I 0 272 3 0 2 M 49 147 G 0 3 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707002 1707706 339 + . gene_id 1 ; sequence Lalb_14657 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1707002 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707002 1707103 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707706 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707706 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1707002 1707706 339 + . alignment_id 1 ; Query Lalb_14657 ; Align 1707002 68 45 ; Align 1707050 83 54 ; Align 1707380 101 147 ; Align 1707530 150 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14657 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 327 Query range: 64 -> 210 Target range: 1694346 -> 1695208 65 : LeuIleValSerIleGlyLysAsnGluSerGluArgLeuPheProPheAlaVal<- : 83 !!!:!!!.!!:!:!!|||||||||:!!|||||||||:!!!!.|||||| !:!! PheLeuAlaAsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTr 1694347 : TTTTTAGCAAATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTG : 1694401 84 : >ProGlySerProLeuTyrValThrProTyrTyrGluIleAlaPhePheValGln : 101 !! !! !||| ! :!!:!!||||||||||||:!! !|||.!!:!!||| pValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGln+ 1694402 : GGTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGg : 1694458 102 : >>>> Target Intron 1 >>>> ValLeuValValTyrGluValGlyIleC : 110 409 bp ..!||| !||||||.!.|||||||||| + ++ThrLeuCysValTyrHisValGlyIleC 1694459 : t.........................agACACTTTGCGTGTACCATGTCGGTATAT : 1694894 111 : ysHisPheCysValAspAsnIleLeuCysIleMetAsnLeuHisValAlaThrGln : 128 ||:!!.!.||| !!|||||||||||| !!:!!:!!||||||||||||||||||||| ysTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGln 1694895 : GTTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAA : 1694948 129 : PheArgIleLeuGlnTyrArgLeuSerAsnLeu<-><-><-><->LysCysGluAs : 143 |||||||||||||||||||||!!!! !|||||| :!! :!!!. PheArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLysGlnTh 1694949 : TTTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAAC : 1695005 144 : nIleGlyAspAspProLeuMetArgValProSerAlaThrGluAsnSerTyrMetT : 162 . !||| ::: ::: ! !!!:! !|||! :!!||||||:!: rAspGlyArgGluLeuGluIleGlyTyrThrAsnPheThrValAspSerTyrLeuG 1695006 : AGACGGTcgagaattggaaattggtTACACAAATTTCACAGTCGATAGTTACTTAC : 1695062 163 : hrPheLysArgCysValGlnHisHisLysThrLeuIleAlaTyrCysAsnLysLeu : 180 !!!.|||!!!|||||||||:!!|||:!!.!!|||! !!.!||||||!!.|||||| lnLeuLysSerCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeu 1695063 : AATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTG : 1695116 181 : GluGluValPheAsnLeuIleValPheAlaGlnIlePheIlePheSerMetLeuIl : 199 |||.!.:!!|||:::|||:!!|||.!!!.!|||:!:.!!.!!.!.:!!|||:!!:! GluAsnIlePheSerLeuLeuValLeuGlyGlnValLeuPheLeuAlaMetValLe 1695117 : GAGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTACT : 1695173 200 : eCysLeuAsnGlyLeuGlnIleLeuValValSer : 210 !|||||| |||! !|||:!!!!!:!!|||||| uCysLeuValGlyTyrGlnLeuPheLeuValSer 1695174 : TTGCCTCGTGGGATATCAGCTATTTCTGGTAAGT : 1695208 vulgar: Lalb_14657 64 210 . KQ414915.1 1694346 1695208 + 327 M 18 54 G 0 3 M 18 54 5 0 2 I 0 405 3 0 2 M 39 117 G 0 12 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694347 1695208 327 + . gene_id 2 ; sequence Lalb_14657 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694347 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694347 1694457 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695208 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695208 . + . insertions 12 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694347 1695208 327 + . alignment_id 2 ; Query Lalb_14657 ; Align 1694347 65 54 ; Align 1694404 83 54 ; Align 1694867 101 117 ; Align 1694996 140 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14657 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 289 Query range: 97 -> 209 Target range: 1702007 -> 1702355 98 : PheValGlnValLeuValValTyrGluValGlyIleCysHisPheCysValAspAs : 116 |||!.!||||||||| !:!!|||.!.||||||:!!|||:!!.!!||| !!||||| PheAlaGlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAs 1702008 : TTTGCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAA : 1702062 117 : nIleLeuCysIleMetAsnLeuHisValAlaThrGlnPheArgIleLeuGlnTyrA : 135 |:!!||||||:!:||||||||||||!.!|||||||||||||||||||||||||||| nLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrA 1702063 : CCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACA : 1702119 136 : rgLeuSerAsnLeuLysCysGluAsn<-><-><->IleGlyAspAspProLeuMet : 150 |||||||||||||| ! !||| :!!! !|||:!! !! !! rgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSer 1702120 : GGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGC : 1702173 151 : ArgValProSerAla<->ThrGluAsnSerTyrMetThrPheLysArgCysValGl : 168 !!.!! !||| ! .!!||||||!!!|||! !.!!||||||!.!||||||!: AlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValAr 1702174 : GCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACG : 1702230 169 : nHisHisLysThrLeuIleAlaTyrCysAsnLysLeuGluGluValPheAsnLeuI : 187 !!!.|||:!!!.!! !|||.!!||||||:!!!:!|||.!.|||:!!|||!..:!!| gGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValI 1702231 : ACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCA : 1702287 188 : leValPheAlaGlnIlePheIlePheSerMetLeuIleCysLeuAsnGlyLeuGln : 205 |||||.!!!.!!!.|||.!!:!!||||||:!:|||||||||||| !|||!!!||| leValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGln 1702288 : TTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAA : 1702341 206 : IleLeuValVal : 209 :!:||||||||| ValLeuValVal 1702342 : GTGCTCGTGGTA : 1702355 vulgar: Lalb_14657 97 209 . KQ414915.1 1702007 1702355 + 289 M 46 138 G 0 9 M 12 36 G 0 3 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702008 1702355 289 + . gene_id 3 ; sequence Lalb_14657 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702008 1702355 . + . KQ414915.1 exonerate:protein2genome:local exon 1702008 1702355 . + . insertions 12 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702008 1702355 289 + . alignment_id 3 ; Query Lalb_14657 ; Align 1702008 98 138 ; Align 1702155 144 36 ; Align 1702194 156 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14657 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 285 Query range: 97 -> 208 Target range: 1699626 -> 1699971 98 : PheValGlnValLeuValValTyrGluValGlyIleCysHisPheCysValAspAs : 116 |||!.!||||||||| !:!!|||.!.||||||:!!|||:!!.!!||| !!||||| PheAlaGlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAs 1699627 : TTTGCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAA : 1699681 117 : nIleLeuCysIleMetAsnLeuHisValAlaThrGlnPheArgIleLeuGlnTyrA : 135 |:!!||||||:!:||||||||||||!.!|||||||||||||||||||||||||||| nLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrA 1699682 : CCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACA : 1699738 136 : rgLeuSerAsnLeuLysCysGluAsn<-><-><->IleGlyAspAspProLeuMet : 150 |||||||||||||| ! !||| :!!! !|||:!! !! !! rgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSer 1699739 : GGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGC : 1699792 151 : ArgValProSerAla<->ThrGluAsnSerTyrMetThrPheLysArgCysValGl : 168 !!.!! !||| ! .!!||||||!!!|||! !.!!||||||!.!||||||!: AlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValAr 1699793 : GCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACG : 1699849 169 : nHisHisLysThrLeuIleAlaTyrCysAsnLysLeuGluGluValPheAsnLeuI : 187 !!!.|||:!!!.!! !|||.!!||||||:!!!:!|||.!.|||:!!|||!..:!!| gGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValI 1699850 : ACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCA : 1699906 188 : leValPheAlaGlnIlePheIlePheSerMetLeuIleCysLeuAsnGlyLeuGln : 205 |||||.!!!.!!!.|||.!!:!!||||||:!:|||||||||||| !|||!!!||| leValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGln 1699907 : TTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAA : 1699960 206 : IleLeuVal : 208 :!:|||||| ValLeuVal 1699961 : GTGCTCGTA : 1699971 vulgar: Lalb_14657 97 208 . KQ414915.1 1699626 1699971 + 285 M 46 138 G 0 9 M 12 36 G 0 3 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699627 1699971 285 + . gene_id 4 ; sequence Lalb_14657 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1699627 1699971 . + . KQ414915.1 exonerate:protein2genome:local exon 1699627 1699971 . + . insertions 12 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699627 1699971 285 + . alignment_id 4 ; Query Lalb_14657 ; Align 1699627 98 138 ; Align 1699774 144 36 ; Align 1699813 156 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14657 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 208 Query range: 66 -> 210 Target range: 1711234 -> 1712233 67 : ValSerIleGlyLysAsnGluSerGluArgLeuPheProPheAlaVal<->ProGl : 84 |||!:!||||||!:!|||||||||!!:|||:!!.!.|||||| !:!! !! ValAsnIleGlyArgAsnGluSerAspArgIleLeuProPheLysMetTrpIleAs 1711235 : GTGAATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTGGATTGA : 1711289 85 : ySerProLeuTyrValThrProTyrTyrGluIleAlaPhePheValGln >>>> : 101 !! !||| !! :!!|||||||||:::|||||| ||| :!!||| pIleProThrSerMetThrProTyrPheGluIlePhePheThrLeuGln++ 1711290 : TATACCGACATCGATGACACcgtattttgaaatattcttcaccTTACAGgt..... : 1711342 102 : Target Intron 1 >>>> ValLeuValValTyrGluValGlyIleCysHisP : 112 564 bp :!! !||| !|||! ! ! ! ! !. +-IleGlyValSerTyrGlyCysPheAspAsnValL 1711343 : ....................aaATTGGCGTGAGTTACGGTTGCTTCGACAACGTTC : 1711937 113 : heCysValAspAsnIleLeuCysIleMetAsnLeuHisValAlaThrGlnPheArg : 130 !.|||:!! |||:!!! !! !! .!.!!!!..:!! ! !!!. ! ! euCysIleMetAsnLeuHisLeuAlaThrGlnPheArgIleLeuGlnHisArgLeu 1711938 : TATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAATACTGCAACATAGACTG : 1711991 131 : IleLeuGlnTyrArgLeuSerAsnLeuLysCysGluAsnIleGlyAspAspProLe : 149 :!: ! ! !! !!|||!.!!:! !:!! !.!.! !|||!!: !!:! ValAsnIleAsnGlyLeuLysSerLysGlnThrProGluLysGlyGluThrSerIl 1711992 : GTGAATATAAACGGTCTGAAGAGCAAACAGACACCGGAGAAAGGTGAAACGTCGAT : 1712048 150 : uMetArgValProSerAlaThrGluAsnSerTyrMetThrPheLysArgCysValG : 168 !!!: ! ! !!..! !.!!!!:||||||||| ..!|||||||||||||||! eIleAspSerThrGluPheAlaAspAsnSerTyrAspValPheLysArgCysValA 1712049 : TATAGATTCGACAGAATTTGCGGATAACTCTTACGACGTTTTCAAAAGATGCGTTC : 1712105 169 : lnHisHisLysThrLeuIleAlaTyrCysAsnLysLeuGluGluValPheAsnLeu : 186 ::!!.|||:!!:!!|||!!:|||!:!|||...||||||||||||:::|||!:!:!! rgGlnHisGlnSerLeuMetAlaPheCysGluLysLeuGluGluMetPheSerMet 1712106 : GTCAACATCAATCTCTGATGGCTTTCTgcgagaaactcgaagaaatgTTCAGTATG : 1712159 187 : IleValPheAlaGlnIlePheIlePheSerMetLeuIleCysLeuAsnGlyLeuGl : 205 |||:!!.!.!.!|||:!:!!.:!:||||||!!:!!!!!:||||||:!!! !! !|| IleIleLeuGlyGlnLeuLeuValPheSerIlePheMetCysLeuAspValCysGl 1712160 : ATTATACTGGGGCAATTGTTAGTGTTCAGTATTTTTATGTGTCTCGACGTGTGCCA : 1712216 206 : nIleLeuValValSer : 210 |:!!|||:!!|||||| nValLeuLeuValSer 1712217 : AGTACTTCTGGTTAGT : 1712233 vulgar: Lalb_14657 66 210 . KQ414915.1 1711234 1712233 + 208 M 16 48 G 0 3 M 18 54 5 0 2 I 0 560 3 0 2 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711235 1712233 208 + . gene_id 5 ; sequence Lalb_14657 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1711235 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711235 1711339 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711903 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711902 1711903 . + . intron_id 0 ; splice_site "AA" KQ414915.1 exonerate:protein2genome:local cds 1711904 1712233 . + . KQ414915.1 exonerate:protein2genome:local exon 1711904 1712233 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711235 1712233 208 + . alignment_id 5 ; Query Lalb_14657 ; Align 1711235 67 48 ; Align 1711286 83 54 ; Align 1711904 101 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14657 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 67 -> 142 Target range: 1681725 -> 1682076 68 : SerIleGlyLysAsnGluSerGluArgLeu<-><->PheProPheAlaValProGl : 84 !:!|||||||||!:!!!:..!||||||:!! ||||||||| !||| !.. AsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAs 1681726 : AACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAA : 1681780 85 : ySerProLeuTyrValThrProTyrTyrGluIleAlaPhePheValGln >>>> : 101 !! !||| !! !:!!|||||||||||||||||| ||| ! :!!:!! nLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681781 : CTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt..... : 1681833 102 : Target Intron 1 >>>> ValLeuValValTyrGluValGlyIleCysHisP : 112 120 bp ..!||| !||| .!. !||||||||| !! ++ThrLeuSerValValHisSerGlyIleCysPheC 1681834 : ....................agACATTATCTGTGGTGCATTCGGGAATTTGTTTCT : 1681984 113 : heCysValAspAsnIleLeuCysIleMetAsnLeuHisValAlaThrGlnPheArg : 130 !||| !!||||||.!!|||||||||:!!!:!:!!||||||!.! !||||||!:! ysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLys 1681985 : GTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAG : 1682038 131 : IleLeuGlnTyrArgLeuSerAsnLeuLysCysGlu : 142 ||||||||| !!!:!|||..!!..:!! ! !!||| IleLeuGlnAsnLysLeuGlnThrValLeuSerGlu 1682039 : ATTTTACAAAACAAACTCCAAACAGTATTGAGTGAG : 1682076 vulgar: Lalb_14657 67 142 . KQ414915.1 1681725 1682076 + 170 M 10 30 G 0 6 M 23 69 5 0 2 I 0 116 3 0 2 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681726 1682076 170 + . gene_id 6 ; sequence Lalb_14657 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681726 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681726 1681830 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682076 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682076 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681726 1682076 170 + . alignment_id 6 ; Query Lalb_14657 ; Align 1681726 68 30 ; Align 1681762 78 69 ; Align 1681951 101 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14660 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 693 Query range: 11 -> 334 Target range: 1693997 -> 1695896 12 : GlnAlaTyrLeuPheIleSerValAsnIleLeuThrValPheGlyGlyLeuPheLy : 30 |||! !! !:!!!:!:!!.!! !||||||||| !:!! !! !!!!||||| GlnAspCysIleTyrValGlyCysAsnIleLeuTyrLeuAlaIleValPhePheLy 1693998 : CAGGACTGCATTTACGTCGGGTGCAACATTTTATACCTAGCGATCGTTTTCTTCAA : 1694052 31 : sIlePheValLeuLeuProHisArgArgAspPhePheSerLeuValHisHisLeuG : 49 ||||.!!||||||! ! !||||||! !!!:|||!:!.!!|||:!!... ! !| sIleLeuValLeuTyrLysHisArgIleGluPheTyrGlyLeuIleArgPheThrG 1694053 : GATCCTCGTTTTGTACAAGCACAGAATAGAATTCTACGGGTTAATCAGGTTCACGC : 1694109 50 : lnHisAsnPheLeuAsnSerAspTyrAspHisHisGluLysAspIleValAsnArg : 67 ||.!.!!.|||! !:!!! !||||||:!! !..|||||| |||:!!::!..! lnGluLysPheTrpHisPheAspTyrAsnSerArgGluLysLeuIleLeuSerGlu 1694110 : AAGAGAAATTCTGGCATTTCGACTATAATTCACGGGAGAAGTTAATTTTATCCGAG : 1694163 68 : CysSerSerLeuCysThrIlePheIleGlyLeuLeuThrLeuSerAlaHisLeuTh : 86 |||!.!!.!:!!||||||:!!||||||! ! !!!!!:!!!!!!!.!!!!. !|| CysLysLysIleCysThrValPheIleValAlaPheSerPheCysThrGlnGlyTh 1694164 : TGCAAGAAGATATGTACCGTTTTCATCGTTGCCTTCAGCTTCTGTACTCAGGGCAC : 1694220 87 : rAlaPheCysTyrAlaAlaSerProLeuIle{A} >>>> Target Intron 1 : 97 |..! ! !!|||!.!!.!!!!|||:!!:!!{|} 100 bp rCysAlaGlyTyrValValThrProIleLeu{A}++ 1694221 : GTGTGCTGGTTACGTAGTGACACCTATTTTA{g}gt.................... : 1694256 98 : >>>> {la}AsnIleGlyArgAsnGluSerAspArgValLeuProPheAsnLeu : 112 {||}|||:!!|||!:!|||:!!|||!!:|||:!!||||||||||||:!! ++{la}AsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMet 1694257 : .....ag{CA}AATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATG : 1694398 113 : TrpValAspLeuProValSerMetThrProTyrTyrGluIleIlePheIleIleGl : 131 |||||||||!!!|||..!.!!:!!:!!||||||||||||:!!:!!|||||||||:! TrpValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGl 1694399 : TGGGTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACA : 1694455 132 : u >>>> Target Intron 2 >>>> ValLeuSerLeuTyrGlnIleCysVa : 140 ! 409 bp ..!|||!!!:!!|||!!.:!! !!:! n++ ++ThrLeuCysValTyrHisValGlyIl 1694456 : Ggt.........................agACACTTTGCGTGTACCATGTCGGTAT : 1694891 141 : lAlaTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaSerG : 159 !..!|||.!.||||||||||||.!!||| !!:!!:!!|||||||||||||||!!!| eCysTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrG 1694892 : ATGTTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTC : 1694948 160 : lnPheArgValLeuGlnTyrArgLeuThrAsnLeuArgTyrLysGlnAspGluLeu : 177 ||||||||:!!||||||||||||!!!! !||||||!!! !! ! !!::!!! ! lnPheArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLysGln 1694949 : AATTTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAA : 1695002 178 : AsnArgLeuGlyAspValLysIleCysMetLeuHisSerThrLysAspValTyrIl : 196 !.. ! ! :::::::::||| !:!!! !||| ||| !|||:! ThrAspGlyArgGluLeuGluIleGlyTyrThrAsnPheThrValAspSerTyrLe 1695003 : ACAGACGGTcgagaattggaaattggtTACACAAATTTCACAGTCGATAGTTACTT : 1695059 197 : eThrPheLysSerTyrValArgGlnHisGlnValLeuIleAlaTyrCysLysLysL : 215 ! !!!.||||||! !|||!:! ! ||||||!.!|||! !!.!||||||||||||| uGlnLeuLysSerCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysL 1695060 : ACAATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGT : 1695116 216 : euGluAlaIlePheAsnLeuIleValLeuGlyAspIleLeuThrPheSerValVal : 233 ||||| !||||||:::|||:!!|||||||||.!.:!:||| !.!.:!!:!!||| euGluAsnIlePheSerLeuLeuValLeuGlyGlnValLeuPheLeuAlaMetVal 1695117 : TGGAGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTA : 1695170 234 : IleCysLeuAsnGlyCysGlnAlaLeuVal >>>> Target Intron 3 >>> : 244 :!!|||||| |||! !||| !!!!:!! 415 bp LeuCysLeuValGlyTyrGlnLeuPheLeu++ 1695171 : CTTTGCCTCGTGGGATATCAGCTATTTCTGgt........................ : 1695205 245 : > ValAspSer<-><->AlaArgArgPheIlePheLeuPhePheLeuLeuThrSe : 259 ..!|||||| :!!|||!.! !! !!!.:!!.!! !||| ! !!! ++ThrAspSerProProSerArgAsnValGlyLeuValLeuAsnLeuAlaGlyTh 1695206 : .agACAGACTCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCAC : 1695669 260 : rPheValHisLeuLeuMetLeuThrTyrSerCysAspGlyValMetArgGluSerV : 278 !!!. !!!.|||!!!|||!!!||||||||||||||||||:!!! |||||||||: rLeuCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGluSerM 1695670 : TTTGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCA : 1695726 279 : alLysValAlaAlaGlyIleTyrAsnSerProTrpCysTyrLeuArgPheAsnLys : 296 !! ! |||::! !!.!:!!!:! !!!||||||... !!|||! !.!.:!!!:! etAspValSerArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAspArg 1695727 : TGGACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGA : 1695780 297 : TyrGlyArgMetLeuArgLysAspAlaIleLeuIleIleMetArgAlaArgValPr : 315 !!|||!:!! :!!|||:!!..! !:!!:!!:!:|||||||||:!!!.! ! AsnGlyLysSerValArgGlnSerMetLeuMetValIleMetArgSerAsnArgCy 1695781 : AATGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTG : 1695837 316 : oCysTyrIleThrAlaArgGlyPhePheProIleThrLeuGluThrTyrThrLysV : 334 !|||! !:!!||||||!!!||||||||||||:!!:!!||||||||||||||| !| sCysCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrGlyV 1695838 : TTGCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGG : 1695894 335 : al : 334 || al 1695895 : TA : 1695896 vulgar: Lalb_14660 11 334 . KQ414915.1 1693997 1695896 + 693 M 85 255 S 0 1 5 0 2 I 0 96 3 0 2 S 1 2 M 34 102 5 0 2 I 0 405 3 0 2 M 112 336 5 0 2 I 0 411 3 0 2 M 3 9 G 0 6 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1693998 1695896 693 + . gene_id 1 ; sequence Lalb_14660 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1693998 1694253 . + . KQ414915.1 exonerate:protein2genome:local exon 1693998 1694253 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694254 1694255 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1694254 1694353 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694352 1694353 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694354 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694354 1694457 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695896 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695896 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1693998 1695896 693 + . alignment_id 1 ; Query Lalb_14660 ; Align 1693998 12 255 ; Align 1694356 98 102 ; Align 1694867 132 336 ; Align 1695618 244 9 ; Align 1695633 247 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14660 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 615 Query range: 96 -> 334 Target range: 1711234 -> 1712648 97 : AlaAsnIleGlyArgAsnGluSerAspArgValLeuProPheAsnLeuTrpValAs : 115 !.!|||||||||||||||||||||||||||:!!|||||||||!!.:!!|||:!!|| ValAsnIleGlyArgAsnGluSerAspArgIleLeuProPheLysMetTrpIleAs 1711235 : GTGAATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTGGATTGA : 1711289 116 : pLeuProValSerMetThrProTyrTyrGluIleIlePheIleIleGlu >>>> : 132 |:!!|||..!|||||||||||||||:::||||||...||| :!!:!! pIleProThrSerMetThrProTyrPheGluIlePhePheThrLeuGln++ 1711290 : TATACCGACATCGATGACACcgtattttgaaatattcttcaccTTACAGgt..... : 1711342 133 : Target Intron 1 >>>> ValLeuSerLeuTyrGlnIleCysValAlaTyrP : 143 546 bp ||||||||| !||||||||| !!|||::!||| ++ValLeuSerAlaTyrGlnIleGlyValSerTyrG 1711343 : ....................agGTTTTATCCGCGTATCAAATTGGCGTGAGTTACG : 1711919 144 : heCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaSerGlnPheArg : 161 !|||||||||||| !!|||||||||||||||||||||:!!|||!!!||||||||| lyCysPheAspAsnValLeuCysIleMetAsnLeuHisLeuAlaThrGlnPheArg 1711920 : GTTGCTTCGACAACGTTCTATGCATCATGAACCTACACTTGGCCACTCAGTTTCGA : 1711973 162 : ValLeuGlnTyrArgLeuThrAsnLeuArg<->TyrLysGlnAspGluLeuAsnAr : 179 :!!||||||:!!||||||..!|||:!!!.! |||... ! :!! ! .. IleLeuGlnHisArgLeuValAsnIleAsnGlyLeuLysSerLysGlnThrProGl 1711974 : ATACTGCAACATAGACTGGTGAATATAAACGGTCTGAAGAGCAAACAGACACCGGA : 1712030 180 : gLeuGlyAspValLysIleCys<->MetLeuHisSerThrLysAspValTyrIleT : 197 ! !|||!!:..!..!||| ! !.!.! !.!! ! :!! !||| !. uLysGlyGluThrSerIleIleAspSerThrGluPheAlaAspAsnSerTyrAspV 1712031 : GAAAGGTGAAACGTCGATTATAGATTCGACAGAATTTGCGGATAACTCTTACGACG : 1712087 198 : hrPheLysSerTyrValArgGlnHisGlnValLeuIleAlaTyrCysLysLysLeu : 215 .!||||||!!!! !||||||||||||||| !|||!!:|||!:!|||:::|||||| alPheLysArgCysValArgGlnHisGlnSerLeuMetAlaPheCysGluLysLeu 1712088 : TTTTCAAAAGATGCGTTCGTCAACATCAATCTCTGATGGCTTTCTgcgagaaactc : 1712141 216 : GluAlaIlePheAsnLeuIleValLeuGlyAspIleLeuThrPheSerValValIl : 234 ||| :::|||!:!:!!|||:!!||||||.!.:!:|||..!||||||:!! !!!! GluGluMetPheSerMetIleIleLeuGlyGlnLeuLeuValPheSerIlePheMe 1712142 : gaagaaatgTTCAGTATGATTATACTGGGGCAATTGTTAGTGTTCAGTATTTTTAT : 1712198 235 : eCysLeuAsnGlyCysGlnAlaLeuValValAspSerAlaArgArg >>>> Tar : 250 :||||||:!!! !||||||!.!|||:!!|||..!||| !!!!!:! tCysLeuAspValCysGlnValLeuLeuValSerSerIleSerLys-+ 1712199 : GTGTCTCGACGTGTGCCAAGTACTTCTGGTTAGTTCAATTAGCAAAat........ : 1712248 251 : get Intron 2 >>>> PheIlePheLeuPhePheLeuLeuThrSerPheValH : 262 148 bp ...|||||| ||| ||| ! !!!!.!. !! ++MetIlePheThrPheHisLeuAlaGlyCysMetCysG 1712249 : .................agAtgattttcacgtttcacctAGCGGGATGTATGTGTC : 1712430 263 : isLeuLeuMetLeuThrTyrSerCysAspGlyValMetArgGluSerValLysVal : 280 !.|||||||||!!!||||||||||||||| !!:!!!!:! !||||||:!!!!.||| lnLeuLeuMetPheThrTyrSerCysAspCysIleIleThrGluSerLeuAsnVal 1712431 : AATTGCTGATGTTTACGTACAGCTGCGATTGTATAATAACGGAAAGTTTGAACGTG : 1712484 281 : AlaAlaGlyIleTyrAsnSerProTrpCysTyrLeuArgPheAsnLysTyrGlyAr : 299 .!!! !!.!:!:|||:!!.!!|||||| !|||! !.!.!:!! ! ||||| ThrGluAlaValTyrAspGlyProTrpProArgLeuProMetSerThrArgGlyAr 1712485 : ACGGAAGCGGTGTACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGAAG : 1712541 300 : gMetLeuArgLysAspAlaIleLeuIleIleMetArgAlaArgValProCysTyrI : 318 ||||:!!||||||||| !||||||:!!|||!!:|||:!!||||||||||||! !: gMetIleArgLysAspLeuIleLeuValIleIleArgSerArgValProCysCysL 1712542 : AATGATAAGGAAGGATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTGCT : 1712598 319 : leThrAlaArgGlyPhePheProIleThrLeuGluThrTyrThrLysVal : 334 !:|||||||||||||||||| !|||:!!||||||||||||||||||||| euThrAlaArgGlyPhePheValIleSerLeuGluThrTyrThrLysVal 1712599 : TGACCGCCAGAGGATTCTTCGTAATATCTTTGGAAACGTATACGAAGGTA : 1712648 vulgar: Lalb_14660 96 334 . KQ414915.1 1711234 1712648 + 615 M 35 105 5 0 2 I 0 542 3 0 2 M 40 120 G 0 3 M 15 45 G 0 3 M 63 189 5 0 2 I 0 144 3 0 2 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711235 1712648 615 + . gene_id 2 ; sequence Lalb_14660 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1711235 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711235 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712245 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712245 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712246 1712247 . + . intron_id 2 ; splice_site "AT" KQ414915.1 exonerate:protein2genome:local intron 1712246 1712393 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1712392 1712393 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1712394 1712648 . + . KQ414915.1 exonerate:protein2genome:local exon 1712394 1712648 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711235 1712648 615 + . alignment_id 2 ; Query Lalb_14660 ; Align 1711235 97 105 ; Align 1711886 132 120 ; Align 1712009 172 45 ; Align 1712057 187 189 ; Align 1712394 250 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14660 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 542 Query range: 97 -> 334 Target range: 1707001 -> 1708439 98 : AsnIleGlyArgAsnGluSerAspArgValLeuProPheAsnLeuTrpValAspLe : 116 !::||||||:::|||||||||||||||:!!||| ! !!|||!!!|||:!!|||!! SerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAspPh 1707002 : AgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGACTT : 1707056 117 : uProValSerMetThrProTyrTyrGluIleIlePheIleIleGlu >>>> Tar : 132 !|||..!!!!|||||||||||||||||||||:!!|||! :!! eProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707057 : TCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt........ : 1707106 133 : get Intron 1 >>>> ValLeuSerLeuTyrGlnIleCysValAlaTyrPheC : 144 276 bp |||!!!! !:!! ! :!!|||:!!::!|||.!!| ++ValPheIleValMetTyrValCysIleSerTyrLeuC 1707107 : .................agGTTTTTATCGTAATGTACGTTTGCATAAGCTACCTTT : 1707416 145 : ysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaSerGlnPheArgVal : 162 ||.!!|||||||||||||||!!:!!:|||||||||..!|||!!!|||||||||:!! ysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIle 1707417 : GTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATA : 1707470 163 : LeuGlnTyrArgLeuThrAsnLeuArgTyrLysGlnAspGluLeuAsnArgLeuGl : 181 |||||||||||||||:!!|||:!! !! ! !.!.!!:... :::::::::.. LeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAspLysIleSe 1707471 : TTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttc : 1707527 182 : yAspValLysIleCysMetLeuHisSerThrLysAspValTyrIleThrPheLysS : 200 . ! ! !!:!:!! ! !!: !||| !! !||||||! rLysLys---------ThrProSerAsnSerAspGluCysTyrAlaLysPheLysA 1707528 : gaaaaaa---------acaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAA : 1707575 201 : erTyrValArgGlnHisGlnValLeuIleAlaTyrCysLysLysLeuGluAlaIle : 218 :!! !:!!!:!|||||||||!.!||||||! !||||||!!.:!!|||:!!! !:!: snCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluVal 1707576 : ATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGGTG : 1707629 219 : PheAsnLeuIleValLeuGlyAspIleLeuThrPheSerValValIleCysLeuAs : 237 |||..!|||.!!||||||!.!.!.:!:||| !||||||:!!:!!!!:||||||:! PheGlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAs 1707630 : TTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGA : 1707686 238 : nGlyCysGlnAlaLeuValValAspSerAlaArg >>>> Target Intron 2 : 249 !|||! ! !!.!:!!||| ! ! ! !!:! 460 bp pGlyTyrLeuValMetValSerArgTyrTyrLys-+ 1707687 : TGGATATTTGGTGATGGTTAGTAGGTATTACAAAat.................... : 1707724 250 : >>>> ArgPheIlePheLeuPhePheLeuLeuThrSerPheValHisLeuLeuM : 265 |||.!!! !||||||||| !||| ! !!!!.!. !!!.||||||| ++ArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuM 1707725 : .....agCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGA : 1708230 266 : etLeuThrTyrSerCysAspGlyValMetArgGluSerValLysValAlaAlaGly : 283 ||!!!||||||||||||||| !!:!!!!:|||||||||:!!!!.|||||| !!.! etPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAla 1708231 : TGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCT : 1708284 284 : IleTyrAsnSerProTrpCysTyrLeuArgPheAsnLysTyrGlyArgMetLeuAr : 302 ||||||:!!!!! !!||| !:!!|||! !.!.:!!!:!! !|||||||||||||| IleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuAr 1708285 : ATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCG : 1708341 303 : gLysAspAlaIleLeuIleIleMetArgAlaArgValProCysTyrIleThrAlaA : 321 ||||||| !! !!!!:!!||| |||:!!||||||||||||! !:!!|||||| gLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaC 1708342 : AAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTT : 1708398 322 : rgGlyPhePheProIleThrLeuGluThrTyrThrLysVal : 334 !!||||||||||||:!::!!|||||||||||||||..!||| ysGlyPhePheProValSerLeuGluThrTyrThrSerVal 1708399 : GTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGGTA : 1708439 vulgar: Lalb_14660 97 334 . KQ414915.1 1707001 1708439 + 542 M 34 102 5 0 2 I 0 272 3 0 2 M 52 156 G 3 0 M 62 186 5 0 2 I 0 456 3 0 2 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707002 1708439 542 + . gene_id 3 ; sequence Lalb_14660 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1707002 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707002 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707721 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707721 . + . insertions 0 ; deletions 3 KQ414915.1 exonerate:protein2genome:local splice5 1707722 1707723 . + . intron_id 2 ; splice_site "AT" KQ414915.1 exonerate:protein2genome:local intron 1707722 1708181 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708180 1708181 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708182 1708439 . + . KQ414915.1 exonerate:protein2genome:local exon 1708182 1708439 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1707002 1708439 542 + . alignment_id 3 ; Query Lalb_14660 ; Align 1707002 98 102 ; Align 1707380 132 156 ; Align 1707536 187 186 ; Align 1708182 249 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14660 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 439 Query range: 130 -> 334 Target range: 1702013 -> 1703238 131 : GluValLeuSerLeuTyrGlnIleCysValAlaTyrPheCysPheAspAsnPheLe : 149 :!!|||||||||||||||!!.:!! !!|||..!|||.!!||||||||||||.!!|| GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 150 : uCysIleMetAsnLeuHisValAlaSerGlnPheArgValLeuGlnTyrArgLeuT : 168 ||||:!:||||||||||||!.!|||!!!|||||||||:!!|||||||||||||||: uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 169 : hrAsnLeuArgTyrLysGlnAspGluLeuAsnArgLeuGlyAspValLysIleCys : 186 !!|||||| !! !!! !.!. :!!! ! ! !..!!!: !!.. !..! erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1702179 187 : MetLeuHisSerThrLysAspValTyrIleThrPheLysSerTyrValArgGlnHi : 205 :!!! !!.!! !.!!:!!:!! !|||! .!!||||||!:!! !||||||||||| LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHi 1702180 : CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACA : 1702236 206 : sGlnValLeuIleAlaTyrCysLysLysLeuGluAlaIlePheAsnLeuIleValL : 224 |||| !! !|||.!!|||||| ! !:!|||.!.! !||||||!..:!!||||||| sGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValL 1702237 : TCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTAC : 1702293 225 : euGlyAspIleLeuThrPheSerValValIleCysLeuAsnGlyCysGlnAlaLeu : 242 ||||| !!||||||..!||||||:!!:!!||||||||| !|||! !|||!.!||| euGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeu 1702294 : TCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTC : 1702347 243 : ValValAspSerAlaArgArgPheIlePheLeu{P} >>>> Target Intron : 254 |||||| !! !!.!..!! !...|||... {|} 613 bp ValValArgPheValGluProLeuIleIleLys{P}-+ 1702348 : GTGGTACGTTTCGTTGAACCTttgattattaaa{t}tt.................. : 1702386 255 : 1 >>>> {he}PheLeuLeuThrSerPheValHisLeuLeuMetLeuThrTyrS : 269 {||} !:!!:!! !|||.!. !!!.||||||:!:!!!||||||| +-{he}HisIleValGlySerLeuCysGlnLeuLeuLeuPheThrTyrS 1702387 : .......at{TT}CACATAGTCGGTAGTCTATGCCAACTATTGCTATTTACCTATA : 1703041 270 : erCysAspGlyValMetArgGluSerValLysValAlaAlaGlyIleTyrAsnSer : 287 |||||||||||:!!!!:..!||||||..!!!.:!!!.!.!!!.!|||||| !.!! erCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaIleTyrLeuGly 1703042 : GCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGATATACCTCGGG : 1703095 288 : ProTrpCysTyrLeuArgPheAsnLysTyrGlyArgMetLeuArgLysAspAlaIl : 306 |||||| :!!|||! !.!.:!!||| !||||||! !||||||!:!||| !! ProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArgArgAspLeuTh 1703096 : CCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGAAGAGACTTGAC : 1703152 307 : eLeuIleIleMetArgAlaArgValProCysTyrIleThrAlaArgGlyPhePheP : 325 !:!!:!!|||:!:|||:!!||| ! !! !!! !:!!||||||!!!|||||||||| rMetValIleValArgSerArgLysSerSerCysLeuThrAlaSerGlyPhePheP 1703153 : AATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAGCGGATTCTTTC : 1703209 326 : roIleThrLeuGluThrTyrThrLysVal : 334 ||:!!:!!|||||||||! !|||! !||| roValSerLeuGluThrCysThrThrVal 1703210 : CTGTTTCGCTGGAAACTTGTACCACGGTA : 1703238 vulgar: Lalb_14660 130 334 . KQ414915.1 1702013 1703238 + 439 M 123 369 S 0 1 5 0 2 I 0 609 3 0 2 S 1 2 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1703238 439 + . gene_id 4 ; sequence Lalb_14660 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702014 1702383 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702383 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1702384 1702385 . + . intron_id 1 ; splice_site "tt" KQ414915.1 exonerate:protein2genome:local intron 1702384 1702996 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702995 1702996 . + . intron_id 0 ; splice_site "AT" KQ414915.1 exonerate:protein2genome:local cds 1702997 1703238 . + . KQ414915.1 exonerate:protein2genome:local exon 1702997 1703238 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1703238 439 + . alignment_id 4 ; Query Lalb_14660 ; Align 1702014 131 369 ; Align 1702999 255 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14660 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 369 Query range: 94 -> 243 Target range: 1699025 -> 1699971 95 : LeuIleAlaAsnIleGlyArgAsnGluSerAspArgValLeuProPheAsnLeuTr : 113 :!!:!!||||||||||||||||||...||||||||||||||||||||||||:!!|| IleLeuAlaAsnIleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTr 1699026 : ATTTTAgcaaatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTG : 1699080 114 : pValAspLeuProValSerMetThrProTyrTyr{Gl} >>>> Target Intr : 125 |||||||||||||:!!|||:!!:!!||| |||{||} 499 bp pValAspLeuProLeuSerValSerProThrTyr{Gl}-- 1699081 : GGTTGATTTGCCGCTGTCTGTGTCACCAACGTAC{GA}aa................ : 1699120 126 : on 1 >>>> {u}IleIlePheIleIleGluValLeuSerLeuTyrGlnIleCys : 139 {|} !.!! ! .!! !:!!|||||||||||||||!!.:!! !! ++{u}AspPheValPheAlaGlnValLeuSerLeuTyrHisValGly 1699121 : .........ag{A}GATTTTGTGTTTGCACAGGTTCTGTCTTTGTACCACGTTGGT : 1699657 140 : ValAlaTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaSe : 158 |||..!|||.!!||||||||||||.!!||||||:!:||||||||||||!.!|||!! ValCysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaTh 1699658 : GTATGTTACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTAC : 1699714 159 : rGlnPheArgValLeuGlnTyrArgLeuThrAsnLeuArgTyrLysGlnAspGluL : 177 !|||||||||:!!|||||||||||||||:!!|||||| !! !!! !.!. :!!! rGlnPheArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysG 1699715 : TCAATTTCGTATACTGCAATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGC : 1699771 178 : euAsnArgLeuGlyAspValLysIleCysMetLeuHisSerThrLysAspValTyr : 195 ! ! !..!!!: !!.. !..!:!!! !!.!! !.!!:!!:!! !||| lnValAspAspAsnGluSerSerAlaAlaLeuSerArgPheAlaGluAsnCysTyr 1699772 : AAGTAGATGACAATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTAT : 1699825 196 : IleThrPheLysSerTyrValArgGlnHisGlnValLeuIleAlaTyrCysLysLy : 214 ! .!!||||||!:!! !||||||||||||||| !! !|||.!!|||||| ! !: LysAlaPheLysAsnCysValArgGlnHisGlnAsnHisIleThrTyrCysHisAr 1699826 : AAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCATATCACGTACTGTCACAG : 1699882 215 : sLeuGluAlaIlePheAsnLeuIleValLeuGlyAspIleLeuThrPheSerValV : 233 !|||.!.! !||||||!..:!!|||||||||||| !!||||||..!||||||:!!: gLeuAsnGluIlePheThrValIleValLeuGlyHisIleLeuValPheSerLeuL 1699883 : ATTGAACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGCCTTC : 1699939 234 : alIleCysLeuAsnGlyCysGlnAlaLeuVal : 243 !!||||||||| !|||! !|||!.!|||||| euIleCysLeuValGlyPheGlnValLeuVal 1699940 : TGATATGTCTGGTTGGATTCCAAGTGCTCGTA : 1699971 vulgar: Lalb_14660 94 243 . KQ414915.1 1699025 1699971 + 369 M 30 90 S 0 2 5 0 2 I 0 495 3 0 2 S 1 1 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699026 1699971 369 + . gene_id 5 ; sequence Lalb_14660 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1699026 1699117 . + . KQ414915.1 exonerate:protein2genome:local exon 1699026 1699117 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699118 1699119 . + . intron_id 1 ; splice_site "AA" KQ414915.1 exonerate:protein2genome:local intron 1699118 1699616 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699615 1699616 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699617 1699971 . + . KQ414915.1 exonerate:protein2genome:local exon 1699617 1699971 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699026 1699971 369 + . alignment_id 5 ; Query Lalb_14660 ; Align 1699026 95 90 ; Align 1699618 126 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14660 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 251 Query range: 9 -> 158 Target range: 1687368 -> 1690006 10 : TyrGlnGlnAlaTyrLeuPheIleSerValAsnIleLeuThrValPheGlyGlyLe : 28 ::: ||| !! !:!!|||:!:!!! !|||! !||| !:!!.!! !!.!:! PhePheGlnHisCysIlePheLeuThrCysAsnThrLeuCysIleLeuLeuAlaIl 1687369 : ttctttcagcATTGCATCTTTCTGACTTGCAACACACTGTGCATTCTTCTGGCGAT : 1687423 29 : uPheLysIlePheValLeuLeuProHisArgArgAspPhePheSerLeuValHisH : 47 !||||||||||||:!!||| ! !||||||! !!!:||| ..!:!!||| : ePheLysIlePheIleLeuSerAsnHisArgThrGluPheLysGluIleValLeuT 1687424 : ATTTAAGATTTTCATACTAAGCAATCACAGAACGGAATTCAAGGAGATAGTCTTGT : 1687480 48 : isLeuGlnHisAsnPheLeuAsnSerAspTyrAspHisHisGluLysAspIleVal : 65 !! !||| ! :!!|||! !:!!..!:!!|||..! ! .!.|||!:!! :!! ! yrAlaGlnLysHisPheTrpHisAspAsnTyrSerLysGluGluArgValLeuTyr 1687481 : ACGCGCAGAAGCATTTTTGGCATGATAATTACAGCAAAGAGGAGAGGGTGCTTTAT : 1687534 66 : AsnArgCysSerSerLeuCysThrIlePheIleGlyLeuLeuThrLeuSerAlaHi : 84 ... !|||..!!!!!!!|||! !:!!!:::!! !|||:!! !!!! !.!!!! GlyAspCysGlnArgPheCysLysLeuTrpValIleLeuIleCysPheLeuThrGl 1687535 : GGAGATTGCCAGAGGTTCTGCAAACTATGGGTCATACTAATATGTTTCCTTACGCA : 1687591 85 : sLeuThrAlaPheCysTyrAlaAlaSerProLeuIle{A} >>>> Target In : 97 . !:!! ! ! ! !||| !!.!!!!||||||! !{|} 424 nAlaSerLeuValPheTyrPheValThrProLeuThr{A}++ 1687592 : AGCCTCTTTAGTGTTCTACTTTGTCACACCACTCACT{G}gt.............. : 1687633 98 : tron 1 >>>> {la}AsnIleGlyArgAsnGluSerAspArgValLeuProPhe : 110 bp {||}|||!!:.!!||||||:!!||||||||||||||||||||| ++{la}AsnMetSerArgAsnLysSerAspArgValLeuProPhe 1687634 : ...........ag{CA}AATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTC : 1688093 111 : AsnLeuTrpValAspLeuProValSerMetThrProTyrTyrGluIleIlePheIl : 129 !!.:!!|||||||||! !|||:!!||| |||||||||||||||:!:!!:|||! LysMetTrpValAspTrpProLeuSerAspThrProTyrTyrGluLeuMetPheTh 1688094 : AAAATGTGGGTCGATTGGCCGCTATCCGACACACCGTATTACGAGTTGATGTTCAC : 1688150 130 : eIleGluVal{Le} >>>> Target Intron 2 >>>> {u}SerLeuTyrG : 137 !.!!:!!|||{! } 1767 bp {!} ...::: rPheGlnVal{Se}++ ++{r}PhePhePheA 1688151 : TTTTCAGGTA{TC}gt.........................ag{t}ttttttttcg : 1689941 138 : lnIleCysValAlaTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHis : 155 |||||| ... !..!||||||||||||:!:|||:!!... laGluLeuArgLysTyrPhe***MetIleArgPheLeuCysIleLeuAsnValArg 1689942 : cggagctacgcaaatatttttgaatgatTCGCTTTTTGTGCATCCTTAACGTAAGA : 1689995 156 : ValAlaSer : 158 !!:!!!!! PheSerThr 1689996 : TTTTCTACC : 1690006 vulgar: Lalb_14660 9 158 . KQ414915.1 1687368 1690006 + 251 M 87 261 S 0 1 5 0 2 I 0 420 3 0 2 S 1 2 M 35 105 S 0 2 5 0 2 I 0 1763 3 0 2 S 1 1 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1687369 1690006 251 + . gene_id 6 ; sequence Lalb_14660 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1687369 1687630 . + . KQ414915.1 exonerate:protein2genome:local exon 1687369 1687630 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1687631 1687632 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1687631 1688054 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1688053 1688054 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1688055 1688163 . + . KQ414915.1 exonerate:protein2genome:local exon 1688055 1688163 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1688164 1688165 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1688164 1689930 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1689929 1689930 . + . intron_id 1 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1689931 1690006 . + . KQ414915.1 exonerate:protein2genome:local exon 1689931 1690006 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1687369 1690006 251 + . alignment_id 6 ; Query Lalb_14660 ; Align 1687369 10 261 ; Align 1688057 98 105 ; Align 1689932 134 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14660 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 201 Query range: 97 -> 167 Target range: 1681725 -> 1682058 98 : AsnIleGlyArgAsnGluSerAspArgValLeuProPheAsnLeuTrpVal<->As : 115 |||||||||!:!!:!!!:..!!!:|||:!!||||||||| !!! ! ||| :! AsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAs 1681726 : AACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAA : 1681780 116 : pLeuProValSerMetThrProTyrTyrGluIleIlePheIleIleGlu >>>> : 132 !||||||..!|||:!!||||||||||||||||||:::|||:!:|||||| nLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681781 : CTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt..... : 1681833 133 : Target Intron 1 >>>> ValLeuSerLeuTyrGlnIleCysValAlaTyrP : 143 120 bp ..!||||||:!! !!. ! :!!..!!:!! ++ThrLeuSerValValHisSerGlyIleCysPheC 1681834 : ....................agACATTATCTGTGGTGCATTCGGGAATTTGTTTCT : 1681984 144 : heCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaSerGlnPheArg : 161 !||||||||||||||||||||||||:!!!:!:!!||||||!.!.!!||||||!:! ysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLys 1681985 : GTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAG : 1682038 162 : ValLeuGlnTyrArgLeu : 167 :!!|||||| !!!:!||| IleLeuGlnAsnLysLeu 1682039 : ATTTTACAAAACAAACTC : 1682058 vulgar: Lalb_14660 97 167 . KQ414915.1 1681725 1682058 + 201 M 17 51 G 0 3 M 17 51 5 0 2 I 0 116 3 0 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681726 1682058 201 + . gene_id 7 ; sequence Lalb_14660 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681726 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681726 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682058 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682058 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681726 1682058 201 + . alignment_id 7 ; Query Lalb_14660 ; Align 1681726 98 51 ; Align 1681780 115 51 ; Align 1681951 132 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14660 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 247 -> 334 Target range: 1682556 -> 1682814 248 : ArgArgPheIlePheLeuPhePheLeuLeuThrSerPheValHisLeuLeuMetLe : 266 !:!|||!!.:!:|||||| !!:!!!!||| !.!! ! :!:...:::...::::: LysArgLeuLeuPheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePheLeuIl 1682557 : AAACGATTGTTGTTCCTAAATTACTTTCTCGGTGGAGTGATacagatatttttaat : 1682611 267 : uThrTyrSerCysAspGlyValMetArgGluSerValLysValAlaAlaGlyIleT : 285 :||| !:!|||:!!! !:!!|||..!:!!|||! ! :!!!.!.!!!.!|||| eThrLeuAsnCysAsnAspIleMetGluGlnSerGlyAlaIleGlyThrAlaIleT 1682612 : aacccTAAATTGCAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAGCGATCT : 1682668 286 : yrAsnSerProTrpCysTyrLeuArgPheAsnLysTyrGlyArgMetLeuArgLys : 303 ||!:!!!! !||| :::||| ::: ..!!!!|||||| yrSerCysAsnTrpGluArgAsnValTyrAsnHisPhe---TyrGlnPheArgLys 1682669 : ACAGTTGTAATTGGGAGAGGAAtgtttataatcatttt---taccAGTTCAGAAAG : 1682719 304 : AspAlaIleLeuIleIleMetArgAlaArgValProCysTyrIleThrAlaArgGl : 322 ||| !!!::!!:!!!!::!:||||||!:! !||||||||||||:!!||| ! AspMetMetIleValMetValArgAlaLysArgProCysTyrIleSerAlaAlaLy 1682720 : GATATGATGATTGTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGCAGCGAA : 1682776 323 : yPhePheProIleThrLeuGluThrTyrThrLysVal : 334 !||||||||||||:!!||||||:!!!:!||||||||| sPhePheProIleSerLeuGluSerPheThrLysVal 1682777 : ATTCTTTCCAATCTCCCTTGAATCGTTCACGAaggta : 1682814 vulgar: Lalb_14660 247 334 . KQ414915.1 1682556 1682814 + 166 M 50 150 G 1 0 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682557 1682814 166 + . gene_id 8 ; sequence Lalb_14660 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1682557 1682814 . + . KQ414915.1 exonerate:protein2genome:local exon 1682557 1682814 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1682557 1682814 166 + . alignment_id 8 ; Query Lalb_14660 ; Align 1682557 248 150 ; Align 1682707 299 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14656 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 253 -> 315 Target range: 1677710 -> 1677896 254 : PheSerArgPheLeuAspGluArgLysAsnSerValArgArgPheAsnGluLeuVa : 272 !:!..!!:! :!!..! !!:!|||.!.! ! !::::::|||...::: :! TyrAspLysGluIleSerIleGlnLysGlnMetSerGlnLysPheGluLysCysLe 1677711 : TACGATAAAGAGATTAGCATACAGAAGCAAATGTCGcagaaattcgagaaatgcTT : 1677765 273 : lArgArgHisArgHisLeuLeuLeuLeuAlaAspHisLeuAsnAspThrIleGlyT : 291 !||||||||| ! |||:!! !! !!.!!!:...||||||::: ..! !| uArgArgHisTyrLeuLeuIleAspTyrValGluGluLeuAsnAsnLeuPheLysT 1677766 : GCGTCGACACTATTTGCTCATTGACTACGTAGAGgaattgaataatttgttCAAAT : 1677822 292 : yrValLeuIleLeuGlnLeuLeuThrSerCysIleLeuIleCysValThrGlyAsp : 309 ||..!|||:!:||||||:!!:!!|||||| !!:!:|||||||||:!!:!!||| !! yrThrLeuLeuLeuGlnMetMetThrSerSerLeuLeuIleCysMetSerGlyTyr 1677823 : ACACCCTTCTGTTACAGATGATGACCTCGAGTTTGTTAATCTGTATGTCTGGTTAC : 1677876 310 : GlnSerLeuValLysSer : 315 :!!!!!|||||| !||| GluCysLeuValValSer 1677877 : GAATGTTTAGTGGTGAGT : 1677896 vulgar: Lalb_14656 253 315 . KQ414915.1 1677710 1677896 + 107 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1677711 1677896 107 + . gene_id 1 ; sequence Lalb_14656 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1677711 1677896 . + . KQ414915.1 exonerate:protein2genome:local exon 1677711 1677896 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1677711 1677896 107 + . alignment_id 1 ; Query Lalb_14656 ; Align 1677711 254 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14662 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 590 Query range: 114 -> 336 Target range: 1707367 -> 1709237 115 : LeuLeuThrGlnTyrPheValLeuValAlaCysGlyIleGlyTyrIleCysValAs : 133 |||! ! !||| !|||:!!:!!:!! ! ! !!|||.!!|||:!!|||:!!|| LeuSerLeuGlnValPheIleValMetTyrValCysIleSerTyrLeuCysIleAs 1707368 : TTATCGCTACAGGTTTTTATCGTAATGTACGTTTGCATAAGCTACCTTTGTATCGA : 1707422 134 : pAsnPheIleCysIleSerAsnPheHisValAlaThrGlnPheArgIleLeuGlnT : 152 |||||||:!:|||!!:! !|||.!.|||..!||||||||||||||||||||||||| pAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnT 1707423 : CAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAAT : 1707479 153 : yrArgIleLeuAsnValHisLysArgThrGlnThrGluIleGlyIleGlyThrPro : 170 |||||:!:! !|||||| ! !!.!:!! !... ||| yrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAspLysIle--------- 1707480 : ACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaatt--------- : 1707527 171 : SerLysLeuSerAlaAspArgAlaAspTyrCysTyrThrValPheLysAspCysIl : 189 |||||| ::: !!..!!.!:!!||| ! ||||||.!! !||||||:!!||||| SerLysLysThrProSerAsnSerAspGluCysTyrAlaLysPheLysAsnCysIl 1707528 : tcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCAT : 1707581 190 : eArgGlnHisGlnAlaLeuIleArgTyrTyrGluAspMetGluGluValPheThrI : 208 |!:!||||||||||||||||||..!|||! !.!.!!::!::!!||||||||| !: eGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluValPheGlyL 1707582 : TCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGGTGTTCGGTT : 1707638 209 : leAlaAlaLeuAlaGlnIleLeuLeuPheSerValLeuIleCysLeuAspGlyTyr : 226 !! !!.!|||||||||:!:||||||||||||:!!|||!!:||||||||||||||| euPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAspGlyTyr 1707639 : TATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGGATAT : 1707692 227 : LeuMetLeuLeu >>>> Target Intron 1 >>>> GlyGluSerSerPro : 235 ||| :!!:!! 457 bp ! !!!:!!! !! ! Leu---ValMet++ ++GluAspThrProIle 1707693 : TTG---GTGATGgt.........................agGAAGATACTCCCATT : 1708173 236 : TyrArgArgLeuSerPheThrPheHisLeuIleGlyThrMetCysGlnLeuTrpMe : 254 !:!||||||!!!||| !|||||||||! ||| !:!!|||||||||! !|| MetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuMe 1708174 : ATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGAT : 1708230 255 : tPheThrTyrSerCysAspCysValLeuGlnGluSerMetArgIleAlaAspThrV : 273 ||||||||||||||||||||||:!!:!!!:!||||||:!!!.!:!:|||:!!.!!: tPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaI 1708231 : GTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTA : 1708287 274 : alTyrGluThrIleTrpLysAsnLeuProMetAsnThrSerGlyLysMetPheArg : 291 !!|||!!: ! |||! :!!|||||||||:!!! !||||||::!|||.!.||| leTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArg 1708288 : TATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGA : 1708341 292 : ThrAspLeuGlnValValMetIleArgSerArgValProCysCysLeuThrAlaSe : 310 ! !|||||| ! !!|||!!: !||||||||||||||||||||||||||||||!! LysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCy 1708342 : AAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTG : 1708398 311 : rGlyPhePheIleValSerLeuGluThrTyrThrLys >>>> Target Intro : 323 !||||||||| !|||||||||||||||||||||..! 759 bp sGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708399 : TGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt................. : 1708439 324 : n 2 >>>> ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgGln : 336 :!!||||||||||||||||||||||||||||||||||||:!! ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgLys 1708440 : ........agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTACGAAAA : 1709237 vulgar: Lalb_14662 114 336 . KQ414915.1 1707367 1709237 + 590 M 53 159 G 3 0 M 57 171 G 1 0 M 2 6 5 0 2 I 0 453 3 0 2 M 92 276 5 0 2 I 0 755 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707368 1709237 590 + . gene_id 1 ; sequence Lalb_14662 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1707368 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707368 1707703 . + . insertions 0 ; deletions 4 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708160 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1708159 1708160 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1708161 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708161 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709237 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709237 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1707368 1709237 590 + . alignment_id 1 ; Query Lalb_14662 ; Align 1707368 115 159 ; Align 1707527 171 171 ; Align 1707698 229 6 ; Align 1708161 231 276 ; Align 1709196 323 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14662 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 515 Query range: 114 -> 335 Target range: 1702004 -> 1703647 115 : LeuLeuThrGlnTyrPheValLeuValAlaCysGlyIleGlyTyrIleCysValAs : 133 :!!!!!.!!||| !.!. !||| ! ! !|||:!! !!||||||||| !!|| ValPheAlaGlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAs 1702005 : GTGTTTGCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGA : 1702059 134 : pAsnPheIleCysIleSerAsnPheHisValAlaThrGlnPheArgIleLeuGlnT : 152 ||||.!!:!:|||:!:! !|||.!.|||!.!||||||||||||||||||||||||| pAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnT 1702060 : CAACCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAAT : 1702116 153 : yrArgIleLeuAsnValHisLysArgThrGlnThrGluIleGlyIleGlyThrPro : 170 |||||:!!! !|||:!! ! ! ! !!.!::!! !:!!:!!! ! !..! ! !! yrArgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSer 1702117 : ACAGGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCC : 1702170 171 : SerLysLeuSerAlaAspArgAlaAspTyrCysTyrThrValPheLysAspCysIl : 189 ||| ! ! !:!! ! !|||!!: !!||||||! !!.!||||||:!!|||:! SerAlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysVa 1702171 : AGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGT : 1702227 190 : eArgGlnHisGlnAlaLeuIleArgTyrTyrGluAspMetGluGluValPheThrI : 208 !|||||||||||| !! !|||! !|||! !.!. :!!.!.|||:!!||||||: lArgGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrV 1702228 : ACGACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGG : 1702284 209 : leAlaAlaLeuAlaGlnIleLeuLeuPheSerValLeuIleCysLeuAspGlyTyr : 226 !! !!.!|||!.!!!.||||||:!!||||||:!!||||||||||||! !|||!:! alIleValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPhe 1702285 : TCATTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTC : 1702338 227 : LeuMetLeuLeu >>>> Target Intron 1 >>>> GlyGluSerSerPro : 235 ! !:!!|||:!! 607 bp ! !!!!||| GlnValLeuVal++ -+ThrProValThrPro 1702339 : CAAGTGCTCGTGgt.........................ggACACCTGTGACTCCA : 1702972 236 : TyrArgArgLeuSerPheThrPheHisLeuIleGlyThrMetCysGlnLeuTrpMe : 254 |||||||||!!!|||..!||||||:!!:!!|||!:!:!:|||||||||! !:! AlaArgArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLeuLe 1702973 : GCGAGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATTGCT : 1703029 255 : tPheThrTyrSerCysAspCysValLeuGlnGluSerMetArgIleAlaAspThrV : 273 :|||||||||||||||||| !!:!!:!!:!!||||||! !!.!|||!.! !.!!: uPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaI 1703030 : ATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGA : 1703086 274 : alTyrGluThrIleTrpLysAsnLeuProMetAsnThrSerGlyLysMetPheArg : 291 !!||| ! !|||! !:!!|||||||||:!!! !:!!|||!:!! !!!.||| leTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArg 1703087 : TATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGA : 1703140 292 : ThrAspLeuGlnValValMetIleArgSerArgValProCysCysLeuThrAlaSe : 310 ! !|||||| !:!!|||!!::!!||||||||| ! !! !!|||||||||||||| ArgAspLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSe 1703141 : AGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAG : 1703197 311 : rGlyPhePheIleValSerLeuGluThrTyrThrLys >>>> Target Intro : 323 |||||||||| !|||||||||||||||! !|||! ! 373 bp rGlyPhePheProValSerLeuGluThrCysThrThr++ 1703198 : CGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGgt................. : 1703238 324 : n 2 >>>> ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuArg : 335 ||||||||||||||| !||||||||||||||||||||| ++ValLeuSerThrAlaMetSerTyrPheThrLeuLeuArg 1703239 : ........agGTGCTCAGTACAGCGATGTCATACTTCACTTTATTAAGG : 1703647 vulgar: Lalb_14662 114 335 . KQ414915.1 1702004 1703647 + 515 M 116 348 5 0 2 I 0 603 3 0 2 M 92 276 5 0 2 I 0 369 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702005 1703647 515 + . gene_id 2 ; sequence Lalb_14662 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702005 1702352 . + . KQ414915.1 exonerate:protein2genome:local exon 1702005 1702352 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1702353 1702354 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1702353 1702959 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702958 1702959 . + . intron_id 0 ; splice_site "GG" KQ414915.1 exonerate:protein2genome:local cds 1702960 1703235 . + . KQ414915.1 exonerate:protein2genome:local exon 1702960 1703235 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1703236 1703237 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1703236 1703608 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1703607 1703608 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1703609 1703647 . + . KQ414915.1 exonerate:protein2genome:local exon 1703609 1703647 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702005 1703647 515 + . alignment_id 2 ; Query Lalb_14662 ; Align 1702005 115 348 ; Align 1702960 231 276 ; Align 1703609 323 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14662 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 477 Query range: 114 -> 336 Target range: 1694854 -> 1696254 115 : LeuLeuThrGlnTyrPheValLeuValAlaCysGlyIleGlyTyrIleCysValAs : 133 |||!!! !||| .!! !:!! ! ! !|||||| !!|||!!:||| !!|| LeuPheLeuGlnThrLeuCysValTyrHisValGlyIleCysTyrMetCysPheAs 1694855 : CTATTTCTGCAGACACTTTGCGTGTACCATGTCGGTATATGTTACATGTGCTTCGA : 1694909 134 : pAsnPheIleCysIleSerAsnPheHisValAlaThrGlnPheArgIleLeuGlnT : 152 ||||.!!:!! !!:!! !|||.!!||||||||||||||||||||||||||||||| pAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGlnPheArgIleLeuGlnT 1694910 : CAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAATTTCGTATCCTTCAAT : 1694966 153 : yrArgIleLeuAsnValHisLysArgThrGlnThrGluIleGlyIleGlyThrPro : 170 |||||.!!:!!|||:!! !!!. !! !:!!! !:!!! !! ! ! yrArgPheMetAsnLeuSerAsnValIleGluLysGlnThrAspGlyArgGluLeu 1694967 : ACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAACAGACGGTcgagaattg : 1695020 171 : SerLysLeuSerAlaAspArgAlaAspTyrCysTyrThrValPheLysAspCysIl : 189 ... ! !.!!:!! !.!!! ! !! !!||| ! !!!.|||..!|||:! GluIleGlyTyrThrAsnPheThrValAspSerTyrLeuGlnLeuLysSerCysVa 1695021 : gaaattggtTACACAAATTTCACAGTCGATAGTTACTTACAATTGAAGAGTTGCGT : 1695077 190 : eArgGlnHisGlnAlaLeuIleArgTyrTyrGluAspMetGluGluValPheThrI : 208 :!:! ! ||||||||||||! ! !!|||! !:!! ! :!!|||.!.:!!|||:!!: lGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeuGluAsnIlePheSerL 1695078 : GCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTGGAGAACATATTTTCGT : 1695134 209 : leAlaAlaLeuAlaGlnIleLeuLeuPheSerValLeuIleCysLeuAspGlyTyr : 226 !: !!.!|||!.!|||:!:|||!!!.!.:!!:!!:!!:!!||||||! |||||| euLeuValLeuGlyGlnValLeuPheLeuAlaMetValLeuCysLeuValGlyTyr 1695135 : TGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTACTTTGCCTCGTGGGATAT : 1695188 227 : LeuMetLeuLeu >>>> Target Intron 1 >>>> GlyGluSerSerPro : 235 ! !:!:!!!||| 415 bp !!!:||| !!||| GlnLeuPheLeu++ ++ThrAspSerProPro 1695189 : CAGCTATTTCTGgt.........................agACAGACTCACCACCT : 1695630 236 : TyrArgArgLeuSerPheThrPheHisLeuIleGlyThrMetCysGlnLeuTrpMe : 254 ! |||!.!:!!.!!!!...!.!!:!!||| !||||||:!!|||||||||!::|| SerArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrLeuCysGlnLeuPheMe 1695631 : TCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTTTGTGTCAACTTTTTAT : 1695687 255 : tPheThrTyrSerCysAspCysValLeuGlnGluSerMetArgIleAlaAspThrV : 273 ||||||||||||||||||| !!:!! !::!||||||||| !:!!::! .!!| tPheThrTyrSerCysAspGlyLeuThrArgGluSerMetAspValSerArgAlaV 1695688 : GTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATGGACGTTAGCAGAGCTG : 1695744 274 : alTyrGluThrIleTrpLysAsnLeuProMetAsnThrSerGlyLysMetPheArg : 291 ||!:!! !! ! ||| !||||||||||||:!!! !!:!||||||! ! ||| alPheAlaArgProTrpAlaAsnLeuProMetAspArgAsnGlyLysSerValArg 1695745 : TATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAATGGGAAAAGTGTGCGA : 1695798 292 : ThrAspLeuGlnValValMetIleArgSerArgValProCysCysLeuThrAlaSe : 310 !..!:!!! !:!!|||!!:!!:||||||!.! ! !||||||||||||||||| GlnSerMetLeuMetValIleMetArgSerAsnArgCysCysCysLeuThrAlaSe 1695799 : CAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTTGCTGCTTAACAGCCAG : 1695855 311 : rGlyPhePheIleValSerLeuGluThrTyrThrLys >>>> Target Intro : 323 |||||||||| !||||||||||||||||||||| ! 319 bp rGlyPhePheProValSerLeuGluThrTyrThrGly++ 1695856 : CGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGgt................. : 1695896 324 : n 2 >>>> ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgGln : 336 ||||||||||||||| !|||||||||||||||||||||||| ++ValLeuSerThrAlaMetSerTyrPheThrLeuLeuArgGln 1695897 : ........agGTCCTCAGCACTGCAATGTCATACTTTACACTACTGAGACAA : 1696254 vulgar: Lalb_14662 114 336 . KQ414915.1 1694854 1696254 + 477 M 116 348 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694855 1696254 477 + . gene_id 3 ; sequence Lalb_14662 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694855 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694855 1695202 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 1 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696254 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696254 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694855 1696254 477 + . alignment_id 3 ; Query Lalb_14662 ; Align 1694855 115 348 ; Align 1695618 231 276 ; Align 1696213 323 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14662 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 323 Query range: 232 -> 329 Target range: 1712375 -> 1712666 233 : SerSerProTyrArgArgLeuSerPheThrPheHisLeuIleGlyThrMetCysGl : 251 :!!||| ! !!:!!:!::: ||||||||||||||| ||| !|||||||| AlaSerValGlyLysGlnMetIlePheThrPheHisLeuAlaGlyCysMetCysGl 1712376 : GCATCTGTGGGTAAACAGAtgattttcacgtttcacctAGCGGGATGTATGTGTCA : 1712430 252 : nLeuTrpMetPheThrTyrSerCysAspCysValLeuGlnGluSerMetArgIleA : 270 |||| !||||||||||||||||||||||||:!!:!! !||||||:!!!.!:!:. nLeuLeuMetPheThrTyrSerCysAspCysIleIleThrGluSerLeuAsnValT 1712431 : ATTGCTGATGTTTACGTACAGCTGCGATTGTATAATAACGGAAAGTTTGAACGTGA : 1712487 271 : laAspThrValTyrGluThrIleTrpLysAsnLeuProMetAsnThrSerGlyLys : 288 !!!!:.!!||||||!!: ! !||| !..!|||||||||!:!|||!!!|||!:! hrGluAlaValTyrAspGlyProTrpProArgLeuProMetSerThrArgGlyArg 1712488 : CGGAAGCGGTGTACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGAAGA : 1712541 289 : MetPheArgThrAspLeuGlnValValMetIleArgSerArgValProCysCysLe : 307 |||.!.|||! !|||||| !:!!|||!!:|||||||||||||||||||||||||| MetIleArgLysAspLeuIleLeuValIleIleArgSerArgValProCysCysLe 1712542 : ATGATAAGGAAGGATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTGCTT : 1712598 308 : uThrAlaSerGlyPhePheIleValSerLeuGluThrTyrThrLysValLeuSerT : 326 |||||||!!!|||||||||:!!:!!||||||||||||||||||||||||:!!..!: uThrAlaArgGlyPhePheValIleSerLeuGluThrTyrThrLysValIleAspS 1712599 : GACCGCCAGAGGATTCTTCGTAATATCTTTGGAAACGTATACGAAGGTAATTGACT : 1712655 327 : hrAlaAlaSer : 329 !! !:!!:!! erLeuSerAla 1712656 : CTCTGTCTGCG : 1712666 vulgar: Lalb_14662 232 329 . KQ414915.1 1712375 1712666 + 323 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712376 1712666 323 + . gene_id 4 ; sequence Lalb_14662 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1712376 1712666 . + . KQ414915.1 exonerate:protein2genome:local exon 1712376 1712666 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712376 1712666 323 + . alignment_id 4 ; Query Lalb_14662 ; Align 1712376 233 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14662 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 259 Query range: 114 -> 230 Target range: 1699623 -> 1699971 115 : LeuLeuThrGlnTyrPheValLeuValAlaCysGlyIleGlyTyrIleCysValAs : 133 :!!!!!.!!||| !.!. !||| ! ! !|||:!! !!||||||||| !!|| ValPheAlaGlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAs 1699624 : GTGTTTGCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGA : 1699678 134 : pAsnPheIleCysIleSerAsnPheHisValAlaThrGlnPheArgIleLeuGlnT : 152 ||||.!!:!:|||:!:! !|||.!.|||!.!||||||||||||||||||||||||| pAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnT 1699679 : CAACCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAAT : 1699735 153 : yrArgIleLeuAsnValHisLysArgThrGlnThrGluIleGlyIleGlyThrPro : 170 |||||:!!! !|||:!! ! ! ! !!.!::!! !:!!:!!! ! !..! ! !! yrArgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSer 1699736 : ACAGGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCC : 1699789 171 : SerLysLeuSerAlaAspArgAlaAspTyrCysTyrThrValPheLysAspCysIl : 189 ||| ! ! !:!! ! !|||!!: !!||||||! !!.!||||||:!!|||:! SerAlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysVa 1699790 : AGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGT : 1699846 190 : eArgGlnHisGlnAlaLeuIleArgTyrTyrGluAspMetGluGluValPheThrI : 208 !|||||||||||| !! !|||! !|||! !.!. :!!.!.|||:!!||||||: lArgGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrV 1699847 : ACGACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGG : 1699903 209 : leAlaAlaLeuAlaGlnIleLeuLeuPheSerValLeuIleCysLeuAspGlyTyr : 226 !! !!.!|||!.!!!.||||||:!!||||||:!!||||||||||||! !|||!:! alIleValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPhe 1699904 : TCATTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTC : 1699957 227 : LeuMetLeuLeu : 230 ! !:!!|||:!! GlnValLeuVal 1699958 : CAAGTGCTCGTA : 1699971 vulgar: Lalb_14662 114 230 . KQ414915.1 1699623 1699971 + 259 M 116 348 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699624 1699971 259 + . gene_id 5 ; sequence Lalb_14662 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1699624 1699971 . + . KQ414915.1 exonerate:protein2genome:local exon 1699624 1699971 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699624 1699971 259 + . alignment_id 5 ; Query Lalb_14662 ; Align 1699624 115 348 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14662 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 249 Query range: 237 -> 336 Target range: 1689489 -> 1690079 238 : ArgLeuSerPheThrPheHisLeuIleGlyThrMetCysGlnLeuTrpMetPheTh : 256 ||||||! !||| !||||||:!!||||||!:!.!. !!..::: ...||||| ArgLeuIlePheLeuPheHisMetIleGlySerPheIleHisIleIlePhePheTh 1689490 : CGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCacataattttcttcac : 1689544 257 : rTyrSerCysAspCysValLeuGlnGluSerMetArgIleAlaAspThrValTyrG : 275 ||||||||||! ! !!:!!:!!:!!||||||||| !|||||| .!!..!|||! rTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleAlaThrAlaThrTyrA 1689545 : gtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCAACAGCAACGTATG : 1689601 276 : luThrIleTrpLysAsnLeuProMetAsnThrSerGlyLysMetPheArgThrAsp : 293 ! !!!:|||! ! !||||||||||||! ! !|||||||||.!.||| !:!! laGlyMetTrpThrValLeuProMetAsnLysValGlyLysMetIleArgGlyAsn 1689602 : CAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAATGATACGAGGAAAT : 1689655 294 : LeuGlnValValMetIleArgSerArgValProCysCysLeuThrAlaSerGlyPh : 312 :!!:!!:!!:!!! :!!|||||| ! !|||||||||:!!||||||.!!||||| MetLysLeuMetThrValArgSerLeuGlnProCysCysIleThrAlaGlyGlyPh 1689656 : ATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAACTGCTGGTGGATT : 1689712 313 : ePheIleValSerLeuGluThrTyrThrLys >>>> Target Intron 1 >> : 323 |||| !|||||||||:!!||| !||| ! 293 bp ePheProValSerLeuLysThrAlaThrAla++ 1689713 : CTTTCCTGTCTCCTTGAAAACTGCTACCGCGgt....................... : 1689747 324 : >> ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgGln : 336 :!!:!!|||:!!.!! !|||||||||||||||:!!|||:!! ++LeuMetSerSerThrMetSerTyrPheThrLeuMetArgGlu 1689748 : ..agCTAATGAGTTCCACAATGTCGTATTTCACGCTCATGAGAGAG : 1690079 vulgar: Lalb_14662 237 336 . KQ414915.1 1689489 1690079 + 249 M 85 255 5 0 2 I 0 289 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1689490 1690079 249 + . gene_id 6 ; sequence Lalb_14662 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1689490 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689490 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690079 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690079 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1689490 1690079 249 + . alignment_id 6 ; Query Lalb_14662 ; Align 1689490 238 255 ; Align 1690038 323 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14662 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 240 Query range: 78 -> 233 Target range: 1711763 -> 1712236 79 : LeuGluSerSerValGluTyrPheSerAlaThrAsnValThrThrArgSerLeuVa : 97 |||::::::|||:::... |||! ! ! !::: !!.!..!||||||::::: LeuLysAsnSerLeuSerThrPheTyrGlnHisSerSerAsnValArgSerIleIl 1711764 : ttaaaaaattctctttctaCGTTTTACCAACATTCAAGCAACGTTCGATcaattat : 1711818 98 : lPheAsnLeuTyrThrAspValValMetLysProPheIlePheGluMet--ThrLe : 115 : ||||||||| ::: ||| ...:!:##||| eCysAsnLeuTyrGluIleAsnSerCysGluLysPheSerHisArgLeu##ThrTh 1711819 : ttgcaatttgtatgaaattaactcatgtgaaaaattttctcatcgCTTAATACAAC : 1711874 116 : uLeuThrGlnTyrPheValLeuValAlaCysGlyIleGlyTyrIleCysValAspA : 134 !!!!.!!||| !!!. ! ! ! ! !|||:!:.!!||| !||| !!|||| rPheAlaGlnValLeuSerAlaTyrGlnIleGlyValSerTyrGlyCysPheAspA 1711875 : ATTTGCACAGGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGGTTGCTTCGACA : 1711931 135 : snPheIleCysIleSerAsnPheHisValAlaThrGlnPheArgIleLeuGlnTyr : 152 || !!:!!||||||! !|||.!.|||:!!||||||||||||||||||||||||:!! snValLeuCysIleMetAsnLeuHisLeuAlaThrGlnPheArgIleLeuGlnHis 1711932 : ACGTTCTATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAATACTGCAACAT : 1711985 153 : ArgIleLeuAsnValHis<-><->LysArgThrGlnThrGluIleGlyIleGlyTh : 169 |||:!::!!|||:!!:!! |||!!!! !|||||| ! ! !! !|| ArgLeuValAsnIleAsnGlyLeuLysSerLysGlnThrProGluLysGlyGluTh 1711986 : AGACTGGTGAATATAAACGGTCTGAAGAGCAAACAGACACCGGAGAAAGGTGAAAC : 1712042 170 : rProSerLysLeuSerAlaAspArgAlaAspTyrCysTyrThrValPheLysAspC : 188 | !!! !! ! !|||.!!!!: !|||||| !!! !||| !||||||||| | rSerIleIleAspSerThrGluPheAlaAspAsnSerTyrAspValPheLysArgC 1712043 : GTCGATTATAGATTCGACAGAATTTGCGGATAACTCTTACGACGTTTTCAAAAGAT : 1712099 189 : ysIleArgGlnHisGlnAlaLeuIleArgTyrTyrGluAspMetGluGluValPhe : 206 ||:!!||||||||||||:!!|||!!: !!:!! ||| :::||||||:::||| ysValArgGlnHisGlnSerLeuMetAlaPheCysGluLysLeuGluGluMetPhe 1712100 : GCGTTCGTCAACATCAATCTCTGATGGCTTTCTgcgagaaactcgaagaaatgTTC : 1712153 207 : ThrIleAlaAlaLeuAlaGlnIleLeuLeuPheSerValLeuIleCysLeuAspGl : 225 !:!!!: ! !|||!.!|||:!:|||:!!||||||:!!!!!!!:|||||||||! SerMetIleIleLeuGlyGlnLeuLeuValPheSerIlePheMetCysLeuAspVa 1712154 : AGTATGATTATACTGGGGCAATTGTTAGTGTTCAGTATTTTTATGTGTCTCGACGT : 1712210 226 : yTyrLeuMetLeuLeuGlyGluSer : 233 !! !! !:!:||||||! !...||| lCysGlnValLeuLeuValSerSer 1712211 : GTGCCAAGTACTTCTGGTTAGTTCA : 1712236 vulgar: Lalb_14662 78 233 . KQ414915.1 1711763 1712236 + 240 M 35 105 F 0 2 M 45 135 G 0 6 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711764 1712236 240 + . gene_id 7 ; sequence Lalb_14662 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1711764 1712236 . + . KQ414915.1 exonerate:protein2genome:local exon 1711764 1712236 . + . insertions 6 ; deletions 0 ; frameshifts 2 KQ414915.1 exonerate:protein2genome:local similarity 1711764 1712236 240 + . alignment_id 7 ; Query Lalb_14662 ; Align 1711764 79 105 ; Align 1711871 114 135 ; Align 1712012 159 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14651 [mRNA] [translate_table: standard] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 207 Query range: 325 -> 438 Target range: 807251 -> 807590 326 : AspThrArgPheGlnPheIleArgSerLeuSerThrAsnAsnValValMetMetValL : 345 !!:||| !!||| |||:!: !:!!|||||||||!!.:!! !||| :!!! GluThrGlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuA 807252 : GAGACAGGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGA : 807309 346 : ysThrLeuValLeuValGlyThrMetLeuAlaGlnLeuPheAlaTyrSerTyrIleGl : 364 :!!:!!!!||||||:!!! !|||:!!||| !||||||!:! !|||:!!||| || rgSerPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGl 807310 : GGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGG : 807366 365 : yGluTyrLeuLysAsnGlnPheGluAspValGlyTyrTyrAlaTyrCysSerThrTrp : 383 |.!. |||:!!:::!:! !|||!!::!!!.! ! !|||||| !||| !||| yAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrp 807367 : CAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGG : 807423 384 : TyrAsnLeuProGlnLysLeuSerPheAspLeuValPheValValMetArgSerGluT : 403 |||..!! !! ! ! ! !:!! ||||||:!!!!.:!!:!! |||.!!.!.! TyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnS 807424 : TACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATT : 807483 404 : yrProValHisLeuLysAlaGlySerPhePheValIleAsnMetGluThrTyrMetSe : 422 ||| !!.!:!!! !||||||!.!||| !! !!!:|||:!: |||!:!! !.. erProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGl 807484 : CGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGA : 807540 423 : rIleValLysThrSerIleSerTyrLeuSerValLeuArgValMetIle : 438 !|||:!!|||.!!||| !|||||||||||||||:!!!:!||||||!!: uIleLeuLysAlaSerGlySerTyrLeuSerValMetLysValMetMet 807541 : GATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATG : 807590 vulgar: Lalb_14651 325 438 . KQ414940.1 807251 807590 + 207 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807252 807590 207 + . gene_id 1 ; sequence Lalb_14651 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807252 807590 . + . KQ414940.1 exonerate:protein2genome:local exon 807252 807590 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807252 807590 207 + . alignment_id 1 ; Query Lalb_14651 ; Align 807252 326 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14650 [mRNA] [translate_table: standard] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 210 Query range: 204 -> 332 Target range: 807206 -> 807590 205 : ValAlaAlaAlaThrIleLeuIleAspPheValTrpLysThrMetValLeuGlyPheG : 224 ::: ..!|||:!!! !! ! !|||||| ! !! !! ! !|||||| IleIleIleGlyThrLeuProThrArgPheValHisTyrProProGluThrGlyPheV 807207 : ataataattgGAACATTACCCACACGCTTCGTGCATTATCCTCCGGAGACAGGTTTCG : 807264 225 : lnPheIleArgSerLeuSerThrAsnAsnValValMetMetValLysThrLeuValLe : 243 |||:!: !:!!|||||||||!!.:!! !||| :!!!:!!:!!!!||||| alPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValLe 807265 : TCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCT : 807321 244 : uValGlyThrMetLeuAlaGlnLeuPheAlaTyrSerTyrIleGlyGluTyrLeuLys : 262 |:!!! !|||:!!||| !||||||!:! !|||:!!||| |||.!. |||:!! uMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGlu 807322 : GATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAG : 807378 263 : AsnGlnPheGluAspValGlyTyrTyrAlaTyrCysSerThrTrpTyrAsnLeuProG : 282 :::!:! !|||!!::!!!.! ! !|||||| !||| !||||||..!! !! ! SerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisG 807379 : TCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACG : 807438 283 : lnLysLeuSerPheAspLeuValPheValValMetArgSerGluTyrProValHisLe : 301 ! ! !:!! ||||||:!!!!.:!!:!! |||.!!.!.! ||| !!.!:! lyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIl 807439 : GGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTAT : 807495 302 : uLysAlaGlySerPhePheValIleAsnMetGluThrTyrMetSerIleValLysThr : 320 !! !||||||!.!||| !! !!!:|||:!: |||!:!! !..!|||:!!|||.!! eThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAla 807496 : AACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCT : 807552 321 : SerIleSerTyrLeuSerValLeuArgValMetVal : 332 ||| !|||||||||||||||:!!!:!||||||:!! SerGlySerTyrLeuSerValMetLysValMetMet 807553 : TCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATG : 807590 vulgar: Lalb_14650 204 332 . KQ414940.1 807206 807590 + 210 M 128 384 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807207 807590 210 + . gene_id 1 ; sequence Lalb_14650 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807207 807590 . + . KQ414940.1 exonerate:protein2genome:local exon 807207 807590 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807207 807590 210 + . alignment_id 1 ; Query Lalb_14650 ; Align 807207 205 384 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14656 [mRNA] [translate_table: standard] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 319 -> 437 Target range: 807236 -> 807590 320 : IleAspValProLeuPheProGlyLeuGlnPheIleLeuSerValGlnValHisAsnV : 339 :!: !! !|||! ! !!|||!!! |||:!::!!:!!:!!.....! ! :!! ValHisTyrProProGluThrGlyPheValPheLeuValAlaLeuSerThrLysAspA 807237 : GTGCATTATCCTCCGGAGACAGGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACA : 807294 340 : alValMetValIleLysThrPheIleAlaMetGlyThrLeuLeuThrGlnThrPheAl : 358 !||| !.!:!:!:!!:!|||:!! !|||! !|||||||||! !||| !!:! snValAlaAlaLeuArgSerPheValLeuMetValThrLeuLeuIleGlnLeuTyrLe 807295 : ACGTTGCAGCATTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCT : 807351 359 : aTyrSerTyrValGlyGluTyrSerLysAsnGlnPheGlyGlyValGlyTyrLeuAla : 377 !|||:!!|||!.!|||.!. !:!!:::!:! !! !! !:!!!.! ! !||| uTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAla 807352 : TTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCC : 807408 378 : TyrSerSerAspTrpTyrAsnAlaProCysIleLeuThrArgAsnIleIlePheValI : 397 |||..!||| !||||||..!..!! ! ! ! !.!!|||:!!:!!:!!!!.:!!| TyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleI 807409 : TATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCA : 807468 398 : leMetGluThrArgThrProValGlnLeuLysAlaGlyHisPhePheValValAsnLe : 416 || ..! !!.!:!!||| !!:::!!! !|||||| ! ||| !! !:!!||||| leHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheValProMetAsnLe 807469 : TCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCT : 807525 417 : uGluThrTyrMetSerIleLeuLysThrSerIleSerTyrLeuSerValLeuArgLeu : 435 | |||!:!! !..!|||||||||.!!||| !|||||||||||||||:!!!:!:!! uPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSerValMetLysVal 807526 : TTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTA : 807582 436 : MetVal : 437 |||:!! MetMet 807583 : ATGATG : 807590 vulgar: Lalb_14656 319 437 . KQ414940.1 807236 807590 + 180 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807237 807590 180 + . gene_id 1 ; sequence Lalb_14656 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807237 807590 . + . KQ414940.1 exonerate:protein2genome:local exon 807237 807590 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807237 807590 180 + . alignment_id 1 ; Query Lalb_14656 ; Align 807237 320 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14655 [mRNA] [translate_table: standard] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 185 Query range: 327 -> 438 Target range: 807257 -> 807590 328 : GlyPheGlnPheIleMetSerLeuHisValHisAsnValValMetValIleLysThrL : 347 |||||| |||:!::!::!!||| !..! ! :!! !||| !.!:!:!:!!:!! GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 348 : euIleValValGlyThrLeuLeuThrGlnThrPheAlaTyrSerTyrValGlyGluTy : 366 !!:!!:!!:!!! !|||||||||! !||| !!:! !|||:!!|||!.!|||.!. heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 367 : rSerLysAsnGlnPheGlyGlyValGlyTyrPheAlaTyrSerSerAsnTrpTyrAsn : 385 !:!!:::!:! !! !! !:!!!.! ! !||||||..!||| !||||||..! rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 386 : AlaProCysCysIleSerLysAsnIleLeuPheValLeuMetLysSerGlnCysProV : 405 ..!! ! ! ! !:!!!:!:!!:!!|||!!.:!!:!! ::!.!!.!.! ||| CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 406 : alHisLeuArgAlaGlyArgPhePheValValAsnLeuGluThrTyrMetSerIleLe : 424 !!.!:!!! !||||||!:!||| !! !:!!|||||| |||!:!! !..!||||| yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 425 : uLysThrSerMetSerTyrLeuSerValLeuArgValMetIle : 438 ||||.!!||| |||||||||||||||:!!!:!||||||!!: uLysAlaSerGlySerTyrLeuSerValMetLysValMetMet 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATG : 807590 vulgar: Lalb_14655 327 438 . KQ414940.1 807257 807590 + 185 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807590 185 + . gene_id 1 ; sequence Lalb_14655 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807590 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807590 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807590 185 + . alignment_id 1 ; Query Lalb_14655 ; Align 807258 328 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14654 [mRNA] [translate_table: standard] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 197 Query range: 329 -> 441 Target range: 807254 -> 807590 330 : ThrGlyPheGlnPheIleLeuSerLeuHisValHisAsnPheValMetValIleLysT : 349 ||||||||| |||:!::!!:!!||| !..! ! :!! !||| !.!:!:!:!! ThrGlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgS 807255 : ACAGGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGA : 807312 350 : hrPheIleValMetSerThrLeuLeuIleGlnThrPheAlaTyrSerTyrValGlyGl : 368 :!|||:!!:!!||| !||||||||||||||| !!:! !|||:!!|||!.!|||.! erPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807313 : GCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 369 : uTyrSerLysAsnGlnPheGlyGlyValGlyTyrPheAlaTyrSerSerAspTrpTyr : 387 . !:!!:::!:! !! !! !:!!!.! ! !||||||..!||| !|||||| nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 388 : AsnAlaProCysCysIleSerLysAsnIleLeuPheValLeuValLysThrGlnCysP : 407 ..!..!! ! ! ! !:!!!:!:!!:!!|||!!.:!!:!! !::! !.!.! | ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 408 : roValTyrLeuArgAlaGlyArgPhePheValValAsnLeuGluThrTyrMetSerIl : 426 || ! !:!!! !||||||!:!||| !! !:!!|||||| |||!:!! !..!|| roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 427 : eLeuArgThrSerMetSerTyrLeuSerValLeuArgValMetIle : 441 ||||!:!.!!||| |||||||||||||||:!!!:!||||||!!: eLeuLysAlaSerGlySerTyrLeuSerValMetLysValMetMet 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATG : 807590 vulgar: Lalb_14654 329 441 . KQ414940.1 807254 807590 + 197 M 112 336 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807255 807590 197 + . gene_id 1 ; sequence Lalb_14654 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807255 807590 . + . KQ414940.1 exonerate:protein2genome:local exon 807255 807590 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807255 807590 197 + . alignment_id 1 ; Query Lalb_14654 ; Align 807255 330 336 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14674 [mRNA] [translate_table: standard] Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 140 -> 227 Target range: 25005 -> 26893 141 : GluGluIleValValProIleLeuValThrLeuIleHisLeuLeuIleMetPheLeuAsn : 160 .!.|||:!!|||:!!|||:!:!!! !..!! ! !|||:!!:!!:!!||||||||| AsnGluValValIleProLeuPheHisValTrpAlaPheLeuValValValPheLeuAsn 25006 : AACGAGGTTGTCATTCCGCTGTTTCACGTCTGGGCGTTTCTGGTGGTAGTGTTTTTGAAC : 25063 161 : AsnTyrSerGlyGlnSerValIleAspSerSerSerGlnIlePheIleGlu{Se} >>> : 178 ! ||| !!!.!|||! !|||!!:|||!!!|||..! |||||| !:!!{:!} IleTyrProAlaGlnMetValMetAspThrSerGluValIlePheTyrGln{Al}++ 25064 : ATATATCCGGCACAGATGGTGATGGACACAAGCGAGGTCATATTCTATCAA{GC}gt... : 25121 179 : > Target Intron 1 >>>> {r}TyrAsnSerValTrpTyrLeuIleProProGlu : 189 1627 bp {!}||| !!.!! !|||||| ! ||| !!..! ++{a}TyrTyrGlySerTrpTyrAlaAlaProThrArg 25122 : ......................ag{G}TATTACGGAAGCTGGTACGCGGCGCCAACGCGG : 26777 190 : SerGlnLysMetLeuLeuLeuValLeuValAsnSerAlaLysAlaValLysIleAsnLeu : 209 :!!||||||:!!||||||||||||||| !!!.!!! ! ! !! !!..:!!::: ! AlaGlnLysLeuLeuLeuLeuValLeuGlnLysCysMetValProCysSerLeuSerAla 26778 : GCACAAAAATTGCTGCTGCTGGTGTTGCAGAAATGCATGGTGCCTTGTAGTTTATCGGCC : 26837 210 : AlaGlyLeuPheIleProSerTyrGluGlyPheSerMetValIleLeuLeuIle : 227 ||| !:!! !!! ! !!||| :!! !!:!:!!! !|||! !!!!:!!||| AlaLysIleValThrAlaSerLeuGlnIleTyrAlaThrValLysPheValIle 26838 : GCTAAAATTGTCACCGCATCGCTGCAAATCTATGCTACGGTAAAATTCGTTATC : 26893 vulgar: Lalb_14674 140 227 . KQ415081.1 25005 26893 + 126 M 37 111 S 0 2 5 0 2 I 0 1623 3 0 2 S 1 1 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 25006 26893 126 + . gene_id 1 ; sequence Lalb_14674 ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 25006 25118 . + . KQ415081.1 exonerate:protein2genome:local exon 25006 25118 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 25119 25120 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 25119 26745 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 26744 26745 . + . intron_id 0 ; splice_site "AG" KQ415081.1 exonerate:protein2genome:local cds 26746 26893 . + . KQ415081.1 exonerate:protein2genome:local exon 26746 26893 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 25006 26893 126 + . alignment_id 1 ; Query Lalb_14674 ; Align 25006 141 111 ; Align 26747 179 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14645 [mRNA] [translate_table: standard] Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 280 -> 366 Target range: 24996 -> 26881 281 : GlnGlnLeuAspGluThrLeuPheAlaIleLeuValValLeuThrHisLeuValValMet : 300 :!!...:!!:!!|||..!:!!.!! !!:!:!!! !|||! !.!! !|||||||||:!! LysSerValAsnGluValValIleProLeuPheHisValTrpAlaPheLeuValValVal 24997 : AAAAGTGTGAACGAGGTTGTCATTCCGCTGTTTCACGTCTGGGCGTTTCTGGTGGTAGTG : 25054 301 : PheLeuAsnAsnTyrSerGlyGlnGlnLeuAlaAsnIleSerValAsnValPheAsnGlu : 320 |||||||||! ||| !!!.!|||..!:!! !:!!! !|||! ! !:!!||| !!:!! PheLeuAsnIleTyrProAlaGlnMetValMetAspThrSerGluValIlePheTyrGln 25055 : TTTTTGAACATATATCCGGCACAGATGGTGATGGACACAAGCGAGGTCATATTCTATCAA : 25114 321 : {Th} >>>> Target Intron 1 >>>> {r}TyrAsnSerMetTrpTyrThrMet : 329 {.!} 1627 bp {!}||| !!.!!! ||||||.!! ! {Al}++ ++{a}TyrTyrGlySerTrpTyrAlaAla 25115 : {GC}gt.........................ag{G}TATTACGGAAGCTGGTACGCGGCG : 26768 330 : ProProLysSerGlnLysLeuLeuLeuLeuValLeuMetLysSerAlaThrGluValGln : 349 ||| !!::!:!!||||||||||||||||||||||||..!|||!!! !..! !... ProThrArgAlaGlnLysLeuLeuLeuLeuValLeuGlnLysCysMetValProCysSer 26769 : CCAACGCGGGCACAAAAATTGCTGCTGCTGGTGTTGCAGAAATGCATGGTGCCTTGTAGT : 26828 350 : PheAsnLeuAlaGlyLeuPheThrProCysTyrGlnGlyPheThrThrVal : 366 !!.::: !||| !:!! !!||| !!! ||| !!:!.!!|||||| LeuSerAlaAlaLysIleValThrAlaSerLeuGlnIleTyrAlaThrVal 26829 : TTATCGGCCGCTAAAATTGTCACCGCATCGCTGCAAATCTATGCTACGGTA : 26881 vulgar: Lalb_14645 280 366 . KQ415081.1 24996 26881 + 124 M 40 120 S 0 2 5 0 2 I 0 1623 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 24997 26881 124 + . gene_id 1 ; sequence Lalb_14645 ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 24997 25118 . + . KQ415081.1 exonerate:protein2genome:local exon 24997 25118 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 25119 25120 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 25119 26745 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 26744 26745 . + . intron_id 0 ; splice_site "AG" KQ415081.1 exonerate:protein2genome:local cds 26746 26881 . + . KQ415081.1 exonerate:protein2genome:local exon 26746 26881 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 24997 26881 124 + . alignment_id 1 ; Query Lalb_14645 ; Align 24997 281 120 ; Align 26747 322 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14645 [mRNA] [translate_table: standard] Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 5 -> 96 Target range: 24984 -> 26884 6 : MetLeuGluMetGluGlnLeuAspGluAlaValMetSerPheLeuValValMetThrHis : 25 :!::!! !:!!:!!...:!!:!!|||!.!|||!!: !!.!.!!! !||| !.!! ! LeuMetProLeuLysSerValAsnGluValValIleProLeuPheHisValTrpAlaPhe 24985 : TTAATGCCATTGAAAAGTGTGAACGAGGTTGTCATTCCGCTGTTTCACGTCTGGGCGTTT : 25042 26 : LeuValValMetPheLeuAsnAsnTyrSerGlyGlnGlnLeuAlaAsnIleSerValAsn : 45 |||||||||:!!|||||||||! ||| !!!.!|||..!:!! !:!!! !|||! ! ! LeuValValValPheLeuAsnIleTyrProAlaGlnMetValMetAspThrSerGluVal 25043 : CTGGTGGTAGTGTTTTTGAACATATATCCGGCACAGATGGTGATGGACACAAGCGAGGTC : 25102 46 : ValPheAsnGlu{Th} >>>> Target Intron 1 >>>> {r}TyrAsnSerLys : 54 :!!||| !!:!!{.!} 1627 bp {!}||| !!.!!!.. IlePheTyrGln{Al}++ ++{a}TyrTyrGlySer 25103 : ATATTCTATCAA{GC}gt.........................ag{G}TATTACGGAAGC : 26756 55 : TrpTyrCysIleProProLysSerGlnLysLeuLeuLeuLeuValLeuMetLysThrAla : 74 ||||||... ||| !!::!:!!||||||||||||||||||||||||..!||| ! ! TrpTyrAlaAlaProThrArgAlaGlnLysLeuLeuLeuLeuValLeuGlnLysCysMet 26757 : TGGTACGCGGCGCCAACGCGGGCACAAAAATTGCTGCTGCTGGTGTTGCAGAAATGCATG : 26816 75 : AsnGluLeuLysPheAsnLeuAlaGlyLeuPheSerProCysTyrGluGlyPheThrMet : 94 ! !!..!!.::: !||| !:!! !!!!! !!! :!! !!:!.!!! ! ValProCysSerLeuSerAlaAlaLysIleValThrAlaSerLeuGlnIleTyrAlaThr 26817 : GTGCCTTGTAGTTTATCGGCCGCTAAAATTGTCACCGCATCGCTGCAAATCTATGCTACG : 26876 95 : ValLys : 96 |||||| ValLys 26877 : GTAAAA : 26884 vulgar: Lalb_14645 5 96 . KQ415081.1 24984 26884 + 122 M 44 132 S 0 2 5 0 2 I 0 1623 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 24985 26884 122 + . gene_id 2 ; sequence Lalb_14645 ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 24985 25118 . + . KQ415081.1 exonerate:protein2genome:local exon 24985 25118 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 25119 25120 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 25119 26745 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 26744 26745 . + . intron_id 0 ; splice_site "AG" KQ415081.1 exonerate:protein2genome:local cds 26746 26884 . + . KQ415081.1 exonerate:protein2genome:local exon 26746 26884 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 24985 26884 122 + . alignment_id 2 ; Query Lalb_14645 ; Align 24985 6 132 ; Align 26747 51 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14660 [mRNA] [translate_table: standard] Target: LHQN01036086.1 Habropoda laboriosa contig36086, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 36 -> 98 Target range: 6 -> 192 37 : HisArgArgAspPhePheSerLeuValHisHisLeuGlnHisAsnPheLeuAsnSerAspTyrA : 58 ||||||! !!!:|||!:!.!!|||:!!... ! !|||.!.!!.|||! !:!!! !:!!|||: HisArgIleGluPheTyrGlyLeuIleArgPheThrGlnGluLysPheTrpHisPheAsnTyrA 7 : CACAGAATAGAATTCTACGGGTTAATCAGGTTCACGCAAGAGAAATTCTGGCATTTCAACTATA : 70 59 : spHisHisGluLysAspIleValAsnArgCysSerSerLeuCysThrIlePheIleGlyLeuLe : 79 !! !..|||||| |||:!!::!..!|||!.!!.!:!!||||||:!!||||||! ! !!! snSerArgGluLysLeuIleLeuSerGluCysLysLysIleCysThrValPheIleValAlaPh 71 : ATTCACGGGAGAAGTTAATTTTATCCGAGTGCAAGAAGATATGTACCGTTTTCATCGTTGCCTT : 133 80 : uThrLeuSerAlaHisLeuThrAlaPheCysTyrAlaAlaSerProLeuIleAlaAsn : 98 !!:!!!!!!!.!!!!. !|||..! ! !!|||!.!!.!!!!|||:!!:!!...||| eSerPheCysThrGlnGlyThrCysAlaGlyTyrValValThrProIleLeuGlyAsn 134 : CAGCTTCTGTACACAGGGCACGTGTGCTGGTTACGTAGTGACACCTATTTTAggtaat : 192 vulgar: Lalb_14660 36 98 . LHQN01036086.1 6 192 + 109 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01036086.1 exonerate:protein2genome:local gene 7 192 109 + . gene_id 1 ; sequence Lalb_14660 ; gene_orientation . LHQN01036086.1 exonerate:protein2genome:local cds 7 192 . + . LHQN01036086.1 exonerate:protein2genome:local exon 7 192 . + . insertions 0 ; deletions 0 LHQN01036086.1 exonerate:protein2genome:local similarity 7 192 109 + . alignment_id 1 ; Query Lalb_14660 ; Align 7 37 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14662 [mRNA] [translate_table: standard] Target: LHQN01040768.1 Habropoda laboriosa contig40768, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 248 -> 282 Target range: 126 -> 228 249 : MetCysGlnLeuTrpMetPheThrTyrSerCysAspCysValLeuGlnGluSerMetArgIleA : 270 :!! !!|||||||||||||||||||||||||||||||||:!! ! !||||||:!!!.!|||| ValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleA 127 : GTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCG : 190 271 : laAspThrValTyrGluThrIleTrpLysAsnLeuPro : 282 ||!!::!!||||||! ! !|||! !||||||||| laGluSerValTyrAlaGlyProTrpIleAsnLeuPro 191 : CTGAATCTGTATACGCTGGACCATGGATAAATTTACCA : 228 vulgar: Lalb_14662 248 282 . LHQN01040768.1 126 228 + 124 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01040768.1 exonerate:protein2genome:local gene 127 228 124 + . gene_id 1 ; sequence Lalb_14662 ; gene_orientation . LHQN01040768.1 exonerate:protein2genome:local cds 127 228 . + . LHQN01040768.1 exonerate:protein2genome:local exon 127 228 . + . insertions 0 ; deletions 0 LHQN01040768.1 exonerate:protein2genome:local similarity 127 228 124 + . alignment_id 1 ; Query Lalb_14662 ; Align 127 249 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14662 [mRNA] [translate_table: standard] Target: LHQN01044749.1 Habropoda laboriosa contig44749, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 237 -> 282 Target range: 136 -> 1 238 : ArgLeuSerPheThrPheHisLeuIleGlyThrMetCysGlnLeuTrpMetPheThrTyrSerC : 259 |||:!!:!!!!..!!! ! !|||!!: ! !:!! !!||||||||||||||||||||||||| ArgValAlaLeuAlaCysPheLeuMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerC 136 : CGCGTTGCTTTGGCGTGCTTCTTGATGACGGGCGTGAGTCAACTATGGATGTTCACGTATAGTT : 73 260 : ysAspCysValLeuGlnGluSerMetArgIleAlaAspThrValTyrGluThrIleTrpLysAs : 280 ||||||||:!! ! !||||||:!!!.!||||||!!::!!||||||! ! !|||! !|| ysAspCysLeuThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAs 72 : GCGATTGCCTAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAA : 10 281 : nLeuPro : 282 ||||||| nLeuPro 9 : TTTACCA : 2 vulgar: Lalb_14662 237 282 . LHQN01044749.1 136 1 - 127 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01044749.1 exonerate:protein2genome:local gene 2 136 127 - . gene_id 1 ; sequence Lalb_14662 ; gene_orientation . LHQN01044749.1 exonerate:protein2genome:local cds 2 136 . - . LHQN01044749.1 exonerate:protein2genome:local exon 2 136 . - . insertions 0 ; deletions 0 LHQN01044749.1 exonerate:protein2genome:local similarity 2 136 127 - . alignment_id 1 ; Query Lalb_14662 ; Align 137 238 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14660 [mRNA] [translate_table: standard] Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 118 -> 166 Target range: 276 -> 420 119 : SerMetThrProTyrTyrGluIleIlePheIleIleGluValLeuSerLeuTyrGlnIleCysV : 140 ...|||! !||| ::: ||| ::!! :!!!.!||||||:!!||||||:!! !| GlnMetIleProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValAsnV 277 : caaATGATTCCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTAACG : 340 141 : alAlaTyrPheCysPheAspAsnPheLeuCysIleMetAsnLeuHisValAlaSerGlnPheAr : 161 ||..!|||.!!||||||||||||...... |||||| !||||||||||||.!!|||||||| alCysTyrLeuCysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheAr 341 : TGTGTTACCTTTGCTtcgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCG : 403 162 : gValLeuGlnTyrArg : 166 |:!!|||||||||||| gIleLeuGlnTyrArg 404 : TATACTACAATACAGA : 420 vulgar: Lalb_14660 118 166 . LHQN01049471.1 276 420 + 132 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 277 420 132 + . gene_id 1 ; sequence Lalb_14660 ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 277 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 277 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 277 420 132 + . alignment_id 1 ; Query Lalb_14660 ; Align 277 119 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14657 [mRNA] [translate_table: standard] Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 97 -> 135 Target range: 306 -> 420 98 : PheValGlnValLeuValValTyrGluValGlyIleCysHisPheCysValAspAsnIleLeuC : 119 ..!..!|||!.!||| !||||||:!!|||..!:!:|||:!!.!!||| |||||||||... LeuThrGlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePheP 307 : ctCACGCAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttt : 370 120 : ysIleMetAsnLeuHisValAlaThrGlnPheArgIleLeuGlnTyrArg : 135 |||||| !|||||||||||| !|||||||||||||||||||||||| heIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 371 : tcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: Lalb_14657 97 135 . LHQN01049471.1 306 420 + 125 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 307 420 125 + . gene_id 1 ; sequence Lalb_14657 ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 307 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 307 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 307 420 125 + . alignment_id 1 ; Query Lalb_14657 ; Align 307 98 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14664 [mRNA] [translate_table: standard] Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 155 Query range: 214 -> 285 Target range: 888 -> 675 215 : TyrThrTyrAlaThrThrValAsnArgArgPheLysIleIleIleMetIleGlnSerLeuValS : 236 !:!! !!:!||| !! !:!!||| !!:!|||!..|||! !!: ! |||! !||||||! PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValT 888 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGA : 825 237 : erIleValThrValCysCysThrLeuTyrGlnLeuThrGlnValHisLeuGlySerArgPheIl : 257 !!! !:!!|||:!!|||! !!.!|||!:!!:!|||||||||..! ! :!! !|||!:! !!:! hrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysValTyrSerGlnValLe 824 : CCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGGTGTATTCGCAAGTTTT : 762 258 : eGluValAlaLeuTyrLeuThrAsnThrLeuIleGlnIlePheTyrTyrCysTrpTyrGlyAsn : 278 !! !:!! !! !!:!:!!..!!:!..!!!! !||||||||||||! !||||||||||||||| uAlaLeuIleProPheMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsn 761 : AGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAAC : 699 279 : GluIleLysLeuLysValGln : 285 |||! !|||:!!||||||!:: GluThrLysValLysValArg 698 : GAGACCAAAGTGAAGGTACGT : 676 vulgar: Lalb_14664 214 285 . LHQN01050085.1 888 675 - 155 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 676 888 155 - . gene_id 1 ; sequence Lalb_14664 ; gene_orientation . LHQN01050085.1 exonerate:protein2genome:local cds 676 888 . - . LHQN01050085.1 exonerate:protein2genome:local exon 676 888 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 676 888 155 - . alignment_id 1 ; Query Lalb_14664 ; Align 889 215 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14687 [mRNA] [translate_table: standard] Target: KQ414601.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold45, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 300 Query range: 0 -> 221 Target range: 1071683 -> 1070740 1 : ProGlnArgProAsnProValLeuPheAlaGlyThrLeuCysTyrGlnSerLeuVa : 19 ||| !||| ... ||| ||| ! ! ! ! !||| !! !:!!:! ProLeuArgLysArgTyrValLysPheIleLeuTyrAlaIleTyrLeuIleIleIl 1071683 : CCTTTAAGAaaacgttacgtgaaattcaTCCTGTACGCGATCTACTTGATCATTAT : 1071629 20 : lIleValLeuCysAlaTrpAlaAlaTyrAspValArgAsnAsnPheGlnMetLeuL : 38 !|||:!!||| ! !! ! !!:!!!:||| !...|||.!. !:!!:!!: eIleIleLeuMetTyrMetAspLeuPheGluValLeuGlyAsnLeuValLeuMetV 1071628 : TATAATTCTCATGTACATGGATCTGTTCGAAGTGTTAGGAAATCTAGTGTTGATGG : 1071572 39 : euLeuAspMetMetGluTrpIleIleLeuValSerSerThrLeuAlaLeuIleLeu : 56 !! !:!!!!:!!:.!. ! !|||:!!|||!!!!!! !!!! !|||.!!||| alGluAsnIleIleHisAsnThrIleIleValThrThrPhePheMetLeuPheLeu 1071571 : TGGAGAATATAATTCACAACACTATCATCGTTACTACTTTTTTCATGTTGTTTCTC : 1071518 57 : ValTrpLeuSerAspSerSerLysValValIleAspGluThrLysArgGluIleAr : 75 :!! ! ! !!:! ! ! !! ! ! !|||||| ! ..!|||!:!|||||| LeuArgCysAsnLysLeuIleAlaHisValIleIleThrValLysGlnGluIleAl 1071517 : CTTCGATGCAATAAATTGATCGCGCATGTGATCATCACCGTGAAACAAGAGATAGC : 1071461 76 : gAspGlyMetPheLeuArgAsnAspGluGluArgArgLeuTyrHisArgTyrAsnS : 94 !!!: !! !||| |||||| ! !!:|||! ! !|||||| !|||:!!| aGluIleLysPhe---ArgAsnLysAspGluMetAspLeuTyrLeuSerTyrHisS 1071460 : TGAGATCAAGTTT---AGGAATAAAGACGAAATGGATTTGTATTTGTCGTATCACA : 1071407 95 : erIleSerTrpLysPheGlyLysTyrAlaThrValPheGlnSerAlaLeuValLeu : 112 |||||:!! |||||||||!:!||||||..! ! :!!!.!:!!!.!:!! erIleAlaAspLysPheGlyArgTyrAlaValSerThrThrAlaValValAlaIle 1071406 : GTATTGCTGACAAATTCGGCAGGTACGCCGTGTCGACAACCGCGGTTGTAGCGATT : 1071353 113 : LeuMetPheLeuArgProAlaIleProLeuLeuLeu<->HisAla{G} >>>> T : 127 |||:!!!:!|||! !||| !:!:! !:!!|||:!! :!!:!:{|} LeuLeuTyrLeuThrProMetLeuHisMetLeuIleThrTyrSer{G}++ 1071352 : CTTCTGTATTTGACGCCTATGTTGCATATGTTGATAACCTATTCa{g}gt...... : 1071302 128 : arget Intron 1 >>>> {ly}GluSerAsnAlaThrLeuSerTyrLysLeuP : 138 280 bp {||}:!!||||||! !||| ! !|||:!!|||| ++{ly}GlnSerAsnGluThrArgValTyrGluLeuP 1071301 : ...................ag{GG}CAGAGTAACGAAACGAGAGTCTACGAATTGC : 1070992 139 : roPheGlnAlaHisIlePhePheAspTyrGlnAsnHisThrMetArgTyrPheLeu : 156 |||||! ::!:!! ! !!.!! |||:!!:!! !! ! !!!|||.!!:!! roPheProSerTyrHisValLeuProTyrLysHisAspPheArgSerTyrIleIle 1070991 : CCTTCCCTAGTTACCATGTTCTCCCGTACAAGCATGACTTTCGCAGTTACATTATC : 1070938 157 : LeuTyrValTyrGlnIleProMetIleTyrSerGlyMetPheHisLeuAlaGluVa : 175 :!!|||!.!!:!||| !|||:!:!!:! !|||:!! !|||:!!.!! :! MetTyrAlaPheGlnGlyProLeuMetLeuValGlyLeuAsnHisIleThrThrLe 1070937 : ATGTACGCGTTCCAGGGTCCGCTTATGTTGGTGGGGTTGAACCACATAACCACCCT : 1070881 176 : lSerTyrValValThrLeuValLeuHisValCysGlyLysPheSerIleLeuCysV : 194 !|||! :!!|||!:!||||||||||||||||||||||||||||||||||||! uSerLeuIleValSerLeuValLeuHisValCysGlyLysPheSerIleLeuSerT 1070880 : CAGTTTAATAGTTAGCCTGGTGCTGCATGTTTGCGGTAAATTCTCGATCTTGTCGT : 1070824 195 : alArgIleArgAsnValProThrLysProGlnSerLeuPheArgHisHisIleLys : 212 !||||||:::|||::: ::! !!:!!..! !!!.!.!... ! |||:!! yrArgIleGlnAsnIleGlnIleGlnSerLysAspAsnLeuAsnArgLysIleGlu 1070823 : ATCgtatacaaaatattcaaatccaGTCGAAAGATAATTTAAACAGGAAAATCGAG : 1070770 213 : SerValValAsnGlnHisLeuGluLeu : 221 ..! !!|||!.!.!.|||:!!:!!||| AspPheValThrAspHisIleLysLeu 1070769 : GATTTCGTGACCGATCACATCAAATTG : 1070741 vulgar: Lalb_14687 0 221 . KQ414601.1 1071683 1070740 - 300 M 79 237 G 1 0 M 44 132 G 0 3 M 2 6 S 0 1 5 0 2 I 0 276 3 0 2 S 1 2 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414601.1 exonerate:protein2genome:local gene 1070741 1071683 300 - . gene_id 1 ; sequence Lalb_14687 ; gene_orientation + KQ414601.1 exonerate:protein2genome:local cds 1071305 1071683 . - . KQ414601.1 exonerate:protein2genome:local exon 1071305 1071683 . - . insertions 3 ; deletions 1 KQ414601.1 exonerate:protein2genome:local splice5 1071303 1071304 . - . intron_id 1 ; splice_site "gt" KQ414601.1 exonerate:protein2genome:local intron 1071025 1071304 . - . intron_id 1 KQ414601.1 exonerate:protein2genome:local splice3 1071025 1071026 . - . intron_id 0 ; splice_site "AG" KQ414601.1 exonerate:protein2genome:local cds 1070741 1071024 . - . KQ414601.1 exonerate:protein2genome:local exon 1070741 1071024 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local similarity 1070741 1071683 300 - . alignment_id 1 ; Query Lalb_14687 ; Align 1071684 1 237 ; Align 1071447 81 132 ; Align 1071312 125 6 ; Align 1071023 128 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14694 [mRNA] [translate_table: standard] Target: KQ414601.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold45, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 276 Query range: 3 -> 197 Target range: 1071602 -> 1070740 4 : TyrAspAlaArgAsnAsnSerGluLeuLeuLeuLeuAspIleSerGluTrpAlaIl : 22 !:!!!:!.! !...||| !! !|||:!!:!! !:!!|||! !.!. .!!|| PheGluValLeuGlyAsnLeuValLeuMetValGluAsnIleIleHisAsnThrIl 1071602 : TTCGAAGTGTTAGGAAATCTAGTGTTGATGGTGGAGAATATAATTCACAACACTAT : 1071548 23 : eIleLeuThrThrAlaValAlaLeuValIleValTrpLeuSerAspSerTrpLysP : 41 ||||:!!|||||| ! !! !||| !!:!!:!! ! ! !!:! ! ! ! !! eIleValThrThrPhePheMetLeuPheLeuLeuArgCysAsnLysLeuIleAlaH 1071547 : CATCGTTACTACTTTTTTCATGTTGTTTCTCCTTCGATGCAATAAATTGATCGCGC : 1071491 42 : roIleIleAspGluIleArgArgAspIleArgGluGlyValPheLeuArgAsnAsp : 59 !:!:||| ! :!:!:!!:!!!:||| !||| :!! !!!|||||| ! isValIleIleThrValLysGlnGluIleAlaGlu---IleLysPheArgAsnLys 1071490 : ATGTGATCATCACCGTGAAACAAGAGATAGCTGAG---ATCAAGTTTAGGAATAAA : 1071440 60 : GluGluArgArgLeuTyrHisArgTyrAsnAsnIleSerCysLysPheGlyLysTy : 78 !!:|||! ! !|||||| !|||:!!!:!|||:!! !|||||||||!:!|| AspGluMetAspLeuTyrLeuSerTyrHisSerIleAlaAspLysPheGlyArgTy 1071439 : GACGAAATGGATTTGTATTTGTCGTATCACAGTATTGCTGACAAATTCGGCAGGTA : 1071383 79 : rAlaThrAlaPheGlnCysAlaLeuLeuLeuLeuMetPheLeuArgProAlaLeuA : 97 ||||..!:!! ...!.!:!! !:!!|||:!!!:!|||! !||| !||| rAlaValSerThrThrAlaValValAlaIleLeuLeuTyrLeuThrProMetLeuH 1071382 : CGCCGTGTCGACAACCGCGGTTGTAGCGATTCTTCTGTATTTGACGCCTATGTTGC : 1071326 98 : spLeuLeuLeu<->HisAla{G} >>>> Target Intron 1 >>>> {ly} : 103 !!:!!|||:!! :!!:!:{|} 280 bp {||} isMetLeuIleThrTyrSer{G}++ ++{ly} 1071325 : ATATGTTGATAACCTATTCa{g}gt.........................ag{GG} : 1071024 104 : GluAsnSerAlaThrArgSerTyrLysLeuProPheGlnGlyHisIlePhePheAs : 122 :!!!:!!:!! !|||||| !|||:!!|||||||||! .!!:!! ! !!.!! GlnSerAsnGluThrArgValTyrGluLeuProPheProSerTyrHisValLeuPr 1071023 : CAGAGTAACGAAACGAGAGTCTACGAATTGCCCTTCCCTAGTTACCATGTTCTCCC : 1070968 123 : pTyrGluAsnHisThrIleArgTyrPheLeuLeuTyrValTyrGlnIleProMetL : 141 |||:!!:!! !! ! !!!!|||.!!:!!:!!|||!.!!:!||| !|||:!:: oTyrLysHisAspPheArgSerTyrIleIleMetTyrAlaPheGlnGlyProLeuM 1070967 : GTACAAGCATGACTTTCGCAGTTACATTATCATGTACGCGTTCCAGGGTCCGCTTA : 1070911 142 : euTyrThrGlyMetPheHisIleAlaGluValSerTyrValIleThrMetValLeu : 159 !!! ..!|||:!! !||||||.!! :!!|||! :!!:!!!:!:!!|||||| etLeuValGlyLeuAsnHisIleThrThrLeuSerLeuIleValSerLeuValLeu 1070910 : TGTTGGTGGGGTTGAACCACATAACCACCCTCAGTTTAATAGTTAGCCTGGTGCTG : 1070857 160 : HisValCysGlyLysPheSerValLeuArgSerArgIleArgAsnMetProThrLy : 178 |||||||||||||||||||||:!!||| !! !||||||:::|||::: :: HisValCysGlyLysPheSerIleLeuSerTyrArgIleGlnAsnIleGlnIleGl 1070856 : CATGTTTGCGGTAAATTCTCGATCTTGTCGTATCgtatacaaaatattcaaatcca : 1070800 179 : sProSerSerLeuPheArgAspHisIleLysSerValValAsnGlnHisIleGluL : 197 ! !!!.!..! !!!.!.! ! |||:!!..! !!|||!.!.!.||||||:!!| nSerLysAspAsnLeuAsnArgLysIleGluAspPheValThrAspHisIleLysL 1070799 : GTCGAAAGATAATTTAAACAGGAAAATCGAGGATTTCGTGACCGATCACATCAAAT : 1070743 198 : eu : 197 || eu 1070742 : TG : 1070741 vulgar: Lalb_14694 3 197 . KQ414601.1 1071602 1070740 - 276 M 49 147 G 1 0 M 47 141 G 0 3 M 2 6 S 0 1 5 0 2 I 0 276 3 0 2 S 1 2 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414601.1 exonerate:protein2genome:local gene 1070741 1071602 276 - . gene_id 1 ; sequence Lalb_14694 ; gene_orientation + KQ414601.1 exonerate:protein2genome:local cds 1071305 1071602 . - . KQ414601.1 exonerate:protein2genome:local exon 1071305 1071602 . - . insertions 3 ; deletions 1 KQ414601.1 exonerate:protein2genome:local splice5 1071303 1071304 . - . intron_id 1 ; splice_site "gt" KQ414601.1 exonerate:protein2genome:local intron 1071025 1071304 . - . intron_id 1 KQ414601.1 exonerate:protein2genome:local splice3 1071025 1071026 . - . intron_id 0 ; splice_site "AG" KQ414601.1 exonerate:protein2genome:local cds 1070741 1071024 . - . KQ414601.1 exonerate:protein2genome:local exon 1070741 1071024 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local similarity 1070741 1071602 276 - . alignment_id 1 ; Query Lalb_14694 ; Align 1071603 4 147 ; Align 1071456 54 141 ; Align 1071312 101 6 ; Align 1071023 104 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14703 [mRNA] [translate_table: standard] Target: KQ414601.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold45, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 290 Query range: 0 -> 221 Target range: 1071683 -> 1070740 1 : ProGlnArgProAsnProValValPheValTrpThrValCysPheGluSerPheVa : 19 ||| !||| ... ||| |||:!! ! !!.! !!:! !! !.!!:! ProLeuArgLysArgTyrValLysPheIleLeuTyrAlaIleTyrLeuIleIleIl 1071683 : CCTTTAAGAaaacgttacgtgaaattcaTCCTGTACGCGATCTACTTGATCATTAT : 1071629 20 : lAlaValLeuMetAlaTrpAlaAlaTyrAspLeuArgAsnAsnIleArgIleLeuL : 38 ! !:!!|||||| ! !! ! !!:!!!::!! !...|||:!! !:!::!!: eIleIleLeuMetTyrMetAspLeuPheGluValLeuGlyAsnLeuValLeuMetV 1071628 : TATAATTCTCATGTACATGGATCTGTTCGAAGTGTTAGGAAATCTAGTGTTGATGG : 1071572 39 : euGlnAsnLeuMetGluTrpValValThrValSerPheIleIleThrLeuIleLeu : 56 !!:!!|||:!!!!:.!. ..!:!!! !|||!!! !.!!.!!! !|||.!!||| alGluAsnIleIleHisAsnThrIleIleValThrThrPhePheMetLeuPheLeu 1071571 : TGGAGAATATAATTCACAACACTATCATCGTTACTACTTTTTTCATGTTGTTTCTC : 1071518 57 : ValTrpLeuSerAspSerSerLysLeuIleIleGluGluIleLysArgGluIleAr : 75 :!! ! ! !!:! ! ! !! ! !! !:!:||| :!:|||!:!|||||| LeuArgCysAsnLysLeuIleAlaHisValIleIleThrValLysGlnGluIleAl 1071517 : CTTCGATGCAATAAATTGATCGCGCATGTGATCATCACCGTGAAACAAGAGATAGC : 1071461 76 : gAspGlyLeuPheLeuArgAsnAspGluGluArgArgLeuTyrHisGlyTyrAsnA : 94 !!!: ! !||| |||||| ! !!:|||! ! !|||||| ..!|||:!!! aGluIleLysPhe---ArgAsnLysAspGluMetAspLeuTyrLeuSerTyrHisS 1071460 : TGAGATCAAGTTT---AGGAATAAAGACGAAATGGATTTGTATTTGTCGTATCACA : 1071407 95 : snIleSerCysLysPheGlyLysTyrAlaThrValPheGlnPheAlaLeuLeuLeu : 112 :!|||:!! !|||||||||!:!||||||..! ! !.!:!! !:!! erIleAlaAspLysPheGlyArgTyrAlaValSerThrThrAlaValValAlaIle 1071406 : GTATTGCTGACAAATTCGGCAGGTACGCCGTGTCGACAACCGCGGTTGTAGCGATT : 1071353 113 : LeuMetPheLeuArgProAlaIleAlaLeuLeuLeu<->HisAla{G} >>>> T : 127 |||:!!!:!|||! !||| !:!: !:!!|||:!! :!!:!:{|} LeuLeuTyrLeuThrProMetLeuHisMetLeuIleThrTyrSer{G}++ 1071352 : CTTCTGTATTTGACGCCTATGTTGCATATGTTGATAACCTATTCa{g}gt...... : 1071302 128 : arget Intron 1 >>>> {ly}GluSerAsnSerThrLeuSerTyrHisLeuP : 138 280 bp {||}:!!||||||..!||| ! !|||.!.|||| ++{ly}GlnSerAsnGluThrArgValTyrGluLeuP 1071301 : ...................ag{GG}CAGAGTAACGAAACGAGAGTCTACGAATTGC : 1070992 139 : roPheGlnThrHisIlePhePheAspTyrGlnAsnHisThrMetValTyrPheLeu : 156 |||||! !:!:!! ! !!.!! |||:!!:!! !! ! !|||.!!:!! roPheProSerTyrHisValLeuProTyrLysHisAspPheArgSerTyrIleIle 1070991 : CCTTCCCTAGTTACCATGTTCTCCCGTACAAGCATGACTTTCGCAGTTACATTATC : 1070938 157 : LeuTyrValCysGlnIleProValAlaTyrSerGlyMetPheHisIleAlaGluVa : 175 :!!|||!.!! !||| !|||:!! !! !|||:!! !||||||.!! :! MetTyrAlaPheGlnGlyProLeuMetLeuValGlyLeuAsnHisIleThrThrLe 1070937 : ATGTACGCGTTCCAGGGTCCGCTTATGTTGGTGGGGTTGAACCACATAACCACCCT : 1070881 176 : lSerTyrValValThrMetValLeuHisValCysGlyLysPheSerIleLeuCysV : 194 !|||! :!!|||!:!:!!|||||||||||||||||||||||||||||||||! uSerLeuIleValSerLeuValLeuHisValCysGlyLysPheSerIleLeuSerT 1070880 : CAGTTTAATAGTTAGCCTGGTGCTGCATGTTTGCGGTAAATTCTCGATCTTGTCGT : 1070824 195 : alArgIleArgAsnValProThrLysProProSerLeuPheArgHisHisIleLys : 212 !||||||:::|||::: ::! !! !..! !!!.!.!... ! |||:!! yrArgIleGlnAsnIleGlnIleGlnSerLysAspAsnLeuAsnArgLysIleGlu 1070823 : ATCgtatacaaaatattcaaatccaGTCGAAAGATAATTTAAACAGGAAAATCGAG : 1070770 213 : SerMetValAspHisHisLeuGluLeu : 221 ..!.!.||| ! !!|||:!!:!!||| AspPheValThrAspHisIleLysLeu 1070769 : GATTTCGTGACCGATCACATCAAATTG : 1070741 vulgar: Lalb_14703 0 221 . KQ414601.1 1071683 1070740 - 290 M 79 237 G 1 0 M 44 132 G 0 3 M 2 6 S 0 1 5 0 2 I 0 276 3 0 2 S 1 2 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414601.1 exonerate:protein2genome:local gene 1070741 1071683 290 - . gene_id 1 ; sequence Lalb_14703 ; gene_orientation + KQ414601.1 exonerate:protein2genome:local cds 1071305 1071683 . - . KQ414601.1 exonerate:protein2genome:local exon 1071305 1071683 . - . insertions 3 ; deletions 1 KQ414601.1 exonerate:protein2genome:local splice5 1071303 1071304 . - . intron_id 1 ; splice_site "gt" KQ414601.1 exonerate:protein2genome:local intron 1071025 1071304 . - . intron_id 1 KQ414601.1 exonerate:protein2genome:local splice3 1071025 1071026 . - . intron_id 0 ; splice_site "AG" KQ414601.1 exonerate:protein2genome:local cds 1070741 1071024 . - . KQ414601.1 exonerate:protein2genome:local exon 1070741 1071024 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local similarity 1070741 1071683 290 - . alignment_id 1 ; Query Lalb_14703 ; Align 1071684 1 237 ; Align 1071447 81 132 ; Align 1071312 125 6 ; Align 1071023 128 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14701 [mRNA] [translate_table: standard] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 226 -> 268 Target range: 1306958 -> 1306832 227 : TyrLysThrCysLeuArgPheHisGlnGlnLeuMetSerThrThrAsnAspTyrAs : 245 |||..!||| !|||! !.!.! ! !! ||| |||..!..!|||||| || TyrSerThrHisLeuMetIleLeuLeuLeuLeuTyrSerValValAsnAspValAs 1306958 : TATTCGACACATTTAATGATACTGCTACTTTTATACAGCGTGGTGAATGatgtgaa : 1306904 246 : nAsnIlePheSerProSerValPheValGlnMetLeuSerSerThrSerIleIleC : 264 ||||:::|||:::|||! !||||||||||||:!:|||!!!||| !! !:!!|||| nAsnLeuPheThrProIleValPheValGlnLeuLeuThrSerGlyIleValIleC 1306903 : taatttatttactccCATCGTTTTCGTACAACTTCTTACAAGCGGAATAGTAATTT : 1306847 265 : ysLeuThrGlyPhe : 268 |||||!:!|||||| ysLeuSerGlyPhe 1306846 : GTTTAAGTGGATTC : 1306833 vulgar: Lalb_14701 226 268 . KQ414608.1 1306958 1306832 - 108 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1306833 1306958 108 - . gene_id 1 ; sequence Lalb_14701 ; gene_orientation . KQ414608.1 exonerate:protein2genome:local cds 1306833 1306958 . - . KQ414608.1 exonerate:protein2genome:local exon 1306833 1306958 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1306833 1306958 108 - . alignment_id 1 ; Query Lalb_14701 ; Align 1306959 227 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14699 [mRNA] [translate_table: standard] Target: KQ414615.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold33, whole genome shotgun sequence Model: protein2genome:local Raw score: 1085 Query range: 0 -> 370 Target range: 2575368 -> 2577180 1 : MetAsnValGluAsnTyrIleSerIleAsnLeuPheValLeuLysPheValGlyLe : 19 ||||||::::::||||||::!! !||||||! !.!.!.!||||||||||||||||| MetAsnIleLysAsnTyrValPheIleAsnGlnLeuAlaLeuLysPheValGlyLe 2575369 : AtgaacattaaaaattacgtCTTTATAAATCAACTGGCCCTAAAGTTTGTTGGACT : 2575423 20 : uTyrProIleAsnIleIleArgTyrIleIleSerValCysCysIleIleLeuIleV : 38 ||||||||||!:!||||||||||||:!!|||!!!:!! !!||||||!!:||||||: uTyrProIleSerIleIleArgTyrLeuIleCysIleSerCysIleMetLeuIleI 2575424 : TTATCCAATAAGTATTATCAGATATCTTATATGCATTAGTTGTATTATGCTTATAA : 2575480 39 : alIleProLeuAlaAlaHisIleTyrLysAsnLeuAspSerLeuAsnIleLeuLeu : 56 !!||||||! ! !.!! ||||||! !|||! !|||..!|||||||||:!!||| leIleProGlnIleThrMetIleTyrThrAsnTrpAspAspLeuAsnIleValLeu 2575481 : TCATACCACAAATAACAATGATTTATACAAATTGGGATGATCTAAATATCGTCTTG : 2575534 57 : GluThr{Se} >>>> Target Intron 1 >>>> {r}SerValLeuLeuTh : 64 ||||||{||} 78 bp {|}||| !|||||||| GluThr{Se}++ ++{r}SerSerLeuLeuTh 2575535 : GAAACA{AG}gt.........................ag{c}tCAAGTCTACTTAC : 2575636 65 : rIleSerLeuAlaIleLeuLysSerLeuIleTrpPheSerLysArgLysLysLeuG : 83 |||||||||||||! !|||||||||:!!||||||.!. ...|||||||||||| rIleSerLeuAlaThrLeuLysSerIleIleTrpMetPheAsnArgLysLysLeuA 2575637 : AATTTCCCTTGCTACATTAAAATCAATAATTTGGATgtttaacagaaaaaaattgg : 2575693 84 : luLeuPheIleAspPheMetLeuThrAspTyrTrpArgLeuGlyGluThrThrVal : 101 !:!!||||||!!:|||||||||||||||||||||..!:!!! !:!!|||!.!||| laValPheIleGluPheMetLeuThrAspTyrTrpGluIleValLysThrAsnVal 2575694 : cGGTTTTCATTGAGTTCATGTTAACAGACTATTGGGAAATAGTTAAAACTAACGTT : 2575747 102 : PheGluHisLeuGlnGluTyrAla{Il} >>>> Target Intron 2 >>>> : 110 ! !|||:!!|||||||||||||||{||} 84 bp SerGluTyrLeuGlnGluTyrAla{Il}++ + 2575748 : TCTGAATACCTACAAGAATATGCA{AT}gt.........................a : 2575858 111 : {e}HisAlaLysLysValThrArgSerTyrLeuPheLeuIleValAsnAlaLeuL : 128 {|}:::||||||...:::|||:::...|||...... ::: |||||||||| +{e}TyrAlaLysAsnIleThrLysGlyTyrPheIleSerMetCysAsnAlaLeuL 2575859 : g{a}tatgctaaaaatattacaaagggttattttatttcaatgtgtAATGCATTAC : 2575912 129 : euPhePhePheSerValProIleIleGluIlePheIleAsnAlaAlaTyrValSer : 146 ||||||||! !|||:!!||||||||||||||||||:!!!.!! ! ! ..! euPhePheCysSerLeuProIleIleGluIlePheValThrGluHis------Gln 2575913 : TATTCTTCTGTAGCTTGCCTATTATCGAAATATTTGTTACTGAACAT------CAA : 2575960 147 : AsnAsnAsnSerThrValLeuArgAspPheProPheValAlaSerTyrProLeuAl : 165 |||::!:!!!:! !..!|||!:!:!!|||||||||!.!|||!!!|||||| .. AsnSerAspAsnLeuThrLeuLysAsnPheProPheAlaAlaThrTyrProThrVa 2575961 : AACTCTGATAATCTTACTCTGAAGAACTTTCCATTTGCTGCAACATATCCTACagt : 2576017 166 : aPheTyrSerPheProPheTyrGlu >>>> Target Intron 3 >>>> Th : 174 .||||||:::||||||||||||||| 68 bp ! lPheTyrAsnPheProPheTyrGlu++ ++Il 2576018 : tttttataactttcctttttacgaggt.........................agAT : 2576112 175 : rValTyrValSerGlnMetValAlaThrSerValCysGlyLeuMetIleLeuAlaT : 193 !!.!|||||||||||| !:!!|||||||||:!!||| !!|||||||||||||||| eAlaTyrValSerGlnAlaLeuAlaThrSerIleCysCysLeuMetIleLeuAlaT 2576113 : TGCATATGTGTCTCAAGCGCTAGCAACCAGTATTTGTTGTCTAATGATACTTGCAA : 2576169 194 : hrAspThrLeuIleAlaSerAlaLeuLeuHisThrCysGlyHisPheGlnIleLeu : 211 ||||| !|||||||||!!!|||:!!||||||||||||||||||||| !:::||| hrAspGlyLeuIleAlaThrAlaValLeuHisThrCysGlyHisPheAlaValLeu 2576170 : CTGATGGTCTAATTGCAACTGCTGTGCTCCATACATGTGGGCATTTTGCAGtactt : 2576223 212 : LysGluAsnLeuLysGlnValAspSerGluIleTyrCysValArgIleLys >>> : 229 ||||||||||||:::::!:!!|||! ! |||||| !!||| !!|||! LysGluAsnLeuArgArgLeuAspLeuCysIleTyrArgValCysIleThr-+ 2576224 : aaagaaaatttaaggcgACTTGATTTATGCATTTATCGCGTATGTATAACTct... : 2576279 230 : > Target Intron 4 >>>> SerLeuSerPheCysAspAsnMetGluLysAs : 239 213 bp !.!!!!!!!||||||||||||||||||||||| -+LysPheArgPheCysAspAsnMetGluLysAs 2576280 : ......................tgAAATTTAGGTTTTGTGATAAtatggaaaagaa : 2576520 240 : nPheHisLeuMetLeuLeuMetGlnThrValAlaSerSerLeuIleLeuCysPheV : 258 |||||||||||||||||||:!:||||||:!!.!!|||||||||!!::!!||||||| nPheHisLeuMetLeuLeuLeuGlnThrMetThrSerSerLeuMetIleCysPheV 2576521 : ttttcaccTAATGCTCCTTTTACAAACTATGACCAGTAGTCTTATGATTTGTTTCG : 2576577 259 : alAlaLeuGlnValThrThr >>>> Target Intron 5 >>>> ThrLeuM : 267 ||!.!!!!||||||:!!||| 86 bp ||||||! alGlyPheGlnValSerThr++ ++ThrLeuT 2576578 : TCGGATTTCAAGTTTCGACCgt.........................agACACTAA : 2576690 268 : etAspHisSerLysValMetLysTyrAlaSerHisLeuMetMetAlaLeuPheGln : 285 !!:!!.|||||||||:::|||:::||||||||||||!!::!!...||||||||| hrGluGlnSerLysValIleLysPheAlaSerHisLeuIleValThrLeuPheGln 2576691 : CAGAACAATctaaagtaattaaatttgcttcTCACTTAATCGTGAcgctttttcaa : 2576744 286 : LeuLeuLeuPheCysPheProGlyAspLeuLeuIleSerGln >>>> Target : 300 |||||||||||||||||||||||||||:!!|||||| !!||| 69 LeuLeuLeuPheCysPheProGlyAspMetLeuIleArgGln++ 2576745 : ttattactcTTTTGTTTCCCTGGGGATATGCTAATCCGACAGgt............ : 2576791 301 : Intron 6 >>>> SerSerGlyIleSerGlnAlaIleTyrSerIleGlnTrpTy : 313 bp |||! !.!!|||||| !||| !|||||||||||||||! ++SerPheSerIleSerThrAlaAlaTyrSerIleGlnTrpCy 2576792 : .............agAGTTTCAGTATAAGTACAGCTGCATATTCAATACAGTGGTG : 2576897 314 : rArgValSerAlaPheLeuArgCysGluAlaSerMetValMetLeuArgSerGlnL : 332 !!:!:!! !!.!!||||||!:! !|||!.!!!!|||:!!!!:||||||||||||! sGlnLeuProThrPheLeuLysAspGluValCysMetIleIleLeuArgSerGlnA 2576898 : TCAACTGCCAACTTTTCTTAAAGACGAAGTATGCATGATTATACTACGTTCTCAAA : 2576954 333 : ysProSerTyrIleThrAlaGlyLysLeuTyrIleMetHisLeuGluAsnPheSer : 350 :! !!|||||||||||||||||||||:!!|||:!:||||||||||||||||||::: rgSerSerTyrIleThrAlaGlyLysIleTyrValMetHisLeuGluAsnPheThr 2576955 : GATCTAGCTACATTACTGCGGGAAAGATATATGTGAtgcatttggaaaatttcacc : 2577008 351 : Ala >>>> Target Intron 7 >>>> ThrLeuSerThrAlaLeuSerTyr : 359 ||| 110 bp ! !||||||||||||! !|||||| Ala++ ++IleLeuSerThrAlaCysSerTyr 2577009 : gcggt.........................agATACTCAGTACTGCATGTTCATAC : 2577145 360 : PheMetMetPheArgSerPheAsnAlaGluAla : 370 |||||||||.!!!:!|||||||||:!!|||||| PheMetMetLeuGlnSerPheAsnSerGluAla 2577146 : TTTATGATGCTTCAAAGCTTCAATTCAGAAGCT : 2577180 vulgar: Lalb_14699 0 370 . KQ414615.1 2575368 2577180 + 1085 M 58 174 S 0 2 5 0 2 I 0 74 3 0 2 S 1 1 M 50 150 S 0 2 5 0 2 I 0 80 3 0 2 S 1 1 M 33 99 G 2 0 M 28 84 5 0 2 I 0 64 3 0 2 M 55 165 5 0 2 I 0 209 3 0 2 M 36 108 5 0 2 I 0 82 3 0 2 M 35 105 5 0 2 I 0 65 3 0 2 M 52 156 5 0 2 I 0 106 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414615.1 exonerate:protein2genome:local gene 2575369 2577180 1085 + . gene_id 1 ; sequence Lalb_14699 ; gene_orientation + KQ414615.1 exonerate:protein2genome:local cds 2575369 2575544 . + . KQ414615.1 exonerate:protein2genome:local exon 2575369 2575544 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2575545 2575546 . + . intron_id 1 ; splice_site "GT" KQ414615.1 exonerate:protein2genome:local intron 2575545 2575622 . + . intron_id 1 KQ414615.1 exonerate:protein2genome:local splice3 2575621 2575622 . + . intron_id 0 ; splice_site "ag" KQ414615.1 exonerate:protein2genome:local cds 2575623 2575775 . + . KQ414615.1 exonerate:protein2genome:local exon 2575623 2575775 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2575776 2575777 . + . intron_id 2 ; splice_site "GT" KQ414615.1 exonerate:protein2genome:local intron 2575776 2575859 . + . intron_id 2 KQ414615.1 exonerate:protein2genome:local splice3 2575858 2575859 . + . intron_id 1 ; splice_site "ag" KQ414615.1 exonerate:protein2genome:local cds 2575860 2576043 . + . KQ414615.1 exonerate:protein2genome:local exon 2575860 2576043 . + . insertions 0 ; deletions 2 KQ414615.1 exonerate:protein2genome:local splice5 2576044 2576045 . + . intron_id 3 ; splice_site "gt" KQ414615.1 exonerate:protein2genome:local intron 2576044 2576111 . + . intron_id 3 KQ414615.1 exonerate:protein2genome:local splice3 2576110 2576111 . + . intron_id 2 ; splice_site "AG" KQ414615.1 exonerate:protein2genome:local cds 2576112 2576276 . + . KQ414615.1 exonerate:protein2genome:local exon 2576112 2576276 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2576277 2576278 . + . intron_id 4 ; splice_site "CT" KQ414615.1 exonerate:protein2genome:local intron 2576277 2576489 . + . intron_id 4 KQ414615.1 exonerate:protein2genome:local splice3 2576488 2576489 . + . intron_id 3 ; splice_site "TG" KQ414615.1 exonerate:protein2genome:local cds 2576490 2576597 . + . KQ414615.1 exonerate:protein2genome:local exon 2576490 2576597 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2576598 2576599 . + . intron_id 5 ; splice_site "GT" KQ414615.1 exonerate:protein2genome:local intron 2576598 2576683 . + . intron_id 5 KQ414615.1 exonerate:protein2genome:local splice3 2576682 2576683 . + . intron_id 4 ; splice_site "AG" KQ414615.1 exonerate:protein2genome:local cds 2576684 2576788 . + . KQ414615.1 exonerate:protein2genome:local exon 2576684 2576788 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2576789 2576790 . + . intron_id 6 ; splice_site "GT" KQ414615.1 exonerate:protein2genome:local intron 2576789 2576857 . + . intron_id 6 KQ414615.1 exonerate:protein2genome:local splice3 2576856 2576857 . + . intron_id 5 ; splice_site "AG" KQ414615.1 exonerate:protein2genome:local cds 2576858 2577013 . + . KQ414615.1 exonerate:protein2genome:local exon 2576858 2577013 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2577014 2577015 . + . intron_id 7 ; splice_site "gt" KQ414615.1 exonerate:protein2genome:local intron 2577014 2577123 . + . intron_id 7 KQ414615.1 exonerate:protein2genome:local splice3 2577122 2577123 . + . intron_id 6 ; splice_site "AG" KQ414615.1 exonerate:protein2genome:local cds 2577124 2577180 . + . KQ414615.1 exonerate:protein2genome:local exon 2577124 2577180 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local similarity 2575369 2577180 1085 + . alignment_id 1 ; Query Lalb_14699 ; Align 2575369 1 174 ; Align 2575624 60 150 ; Align 2575861 111 99 ; Align 2575960 146 84 ; Align 2576112 174 165 ; Align 2576490 229 108 ; Align 2576684 265 105 ; Align 2576858 300 156 ; Align 2577124 352 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14700 [mRNA] [translate_table: standard] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 335 Query range: 15 -> 169 Target range: 203813 -> 204284 16 : ValMetLeuLysIleLeuAsnValMetAlaAspAspTrpGluLysProLysThrAspG : 35 |||:!:||| !:!!:!!|||:!!!!:|||!!:||||||! !||| !||||||||| ValLeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspP 203814 : GTTCTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATT : 203871 36 : luGluLysAsnIleMetTyrArgTyrAlaLysMetAlaArgIleValAlaValLeuGl : 54 |||!:!:!!:!:||| !:! .!!::!!!:.!!||| !..!::!:!!|||.! heGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSe 203872 : TCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAG : 203928 55 : yPheIlePheAlaGlyIleAlaIleLeuMetValIleValLeuProLysPheGlyIle : 73 !!:! !!. ! !! !|||:!!:!!.!.:!!||||||||||||!:! !|||||| rTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIle 203929 : TTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATT : 203985 74 : TyrIleArgHisThrThrAspGlyIleAspVal<-><-><->PheProPheProThrT : 90 !! !|||:!!..!|||:!!! !! !:!!:!! |||||| ! ||||||| ThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrT 203986 : ACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaactt : 204045 91 : yrTyrValTyrAspValThrArgSerProTyrTyrGluIleIleTyrPheGlyGlnIl : 109 |||||:::||||||::::!!..!!!!||||||!:!||||||!!:!:!.!! !|||!! yrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMe 204046 : attatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAAT : 204102 110 : ePheMetLeuValIleThrLeuLeuAlaTyrAsnGlyIleAsnIleLeuPheGlyThr : 128 : !! ||||||:!!! ! !|||..!|||! !|||:!!:!!! !!!!||||||! ! tAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIle 204103 : GGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATA : 204159 129 : IlePheLeuHisIleCysGlyGlnAlaGluAsnLeuArgSerArgIleAlaSerGlnA : 148 :!:.!!|||||||||||||||||| !||||||||||||!!!|||:!!|||!:! !! LeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleL 204160 : TTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAA : 204219 149 : rgLysPheGlyAspPheGlyGlnAlaLeuAlaSerIleValSerAspHisValArgLe : 167 :! ! !!.! ! !|||! !!:: !|||!.!!!!! |||..!|||||||||||||| ysHisLeuGluThrPheAspArgIleLeuValThrThrValGluAspHisValArgLe 204220 : AACATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCGACT : 204276 168 : uIleArg : 169 ||||||| uIleArg 204277 : TATTAGG : 204284 vulgar: Lalb_14700 15 169 . KQ414617.1 203813 204284 + 335 M 69 207 G 0 9 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203814 204284 335 + . gene_id 1 ; sequence Lalb_14700 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203814 204284 . + . KQ414617.1 exonerate:protein2genome:local exon 203814 204284 . + . insertions 9 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203814 204284 335 + . alignment_id 1 ; Query Lalb_14700 ; Align 203814 16 207 ; Align 204030 85 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14700 [mRNA] [translate_table: standard] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 200 Query range: 225 -> 298 Target range: 204724 -> 204943 226 : PheIleGlnMetPhePheTyrPheIleThrGlyGlnThrLeuLeuAsnGluSerGluG : 245 |||... :::::!!:!! ... :::||| !! :!!||||||! PhePheProLeuTyrTyrLeuSerSerPheSerIleSerLeuSerIleLysSerGluG 204725 : ttctttcctctatACTACTTgtcttcattttcaatttctttgtCGATAAAGTCCGAAG : 204782 246 : lyIleTyrAspAlaThrTyrGluCysGlyTrpLeuAsnLeuLysSerAsnGluAlaLy : 264 !:!!|||! !|||.!!|||||||||! !|||||||||||||||||||||:!!||||| luValTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsnLysAlaLy 204783 : AAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAACAAGGCGAA : 204839 265 : sSerLeuIleLeuValMetAlaArgSerLysLysProLeuPheValSerAlaGlyLys : 283 |||||||||||||:!!|||||||||:!!:!!!:!||||||! !:!!!!!||||||||| sSerLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuThrAlaGlyLys 204840 : AAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGcaggaaaa : 204896 284 : LeuPheProMetSerTyrLeuThrPheGlyAsnValIleLysIle : 298 ||||||||||||!!! ||||||||| !!||||||! !:!!:!! LeuPheProMetThrMetLeuThrPheCysAsnValThrGlnLeu 204897 : ttatttcctatGACGATGCTAACGTTTTGCAACGTCACTCAGCTA : 204943 vulgar: Lalb_14700 225 298 . KQ414617.1 204724 204943 + 200 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204725 204943 200 + . gene_id 2 ; sequence Lalb_14700 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204725 204943 . + . KQ414617.1 exonerate:protein2genome:local exon 204725 204943 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204725 204943 200 + . alignment_id 2 ; Query Lalb_14700 ; Align 204725 226 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14701 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence Model: protein2genome:local Raw score: 771 Query range: 0 -> 275 Target range: 454103 -> 457679 1 : ArgTyrCysGlyLeuTrpValLeuAsnProAsnThrGluSerValLeuArgCysGlyT : 20 |||||| !!||||||||| :::... ... !..!||| !!:!!! ! !!.!| ArgTyrSerGlyLeuTrpLysIleGluSerLysHisSerSerPheMetThrIleAlaT 454104 : AGATACAGTGGCCTctggaaaattgaatcgaaacACTCGTCGTTTATGACAATCGCTT : 454161 21 : yrPheAlaTrpLysValPheIleIleAlaThrMetTyrIlePheThrIleThrLeuLe : 39 ||||||||!::|||:!!!::|||:!! !! !||| !!:!!|||.!!:!!|||:!!!! yrPheAlaTyrLysLeuTrpIleLeuIleMetMetAsnValPheAlaValThrIlePh 454162 : ACTTCGCGTACAAACTATGGATACTCATAATGATGAACGTATTCGCCGTCACTATATT : 454218 40 : uAlaAspIleTyrThrSerIleAspAspIleSerValAlaThrAspSerGlyCysIle : 58 !|||||||||||| !!:!!!:|||:!!:!!|||:!! !!:!|||..!||||||.!! eAlaAspIleTyrGluAsnMetAspAsnLeuSerIleIleSerAspAspGlyCysPhe 454219 : CGCAGACATCTACGAGAACATGGACAACCTATCGATCATTAGCGACGACGGTTGTTTC : 454275 59 : CysAlaGlyMetIleValValValPheLysThrMetAsnTyrGlnLeuAsnGlnLysA : 78 !||||||!!::!!||||||:!!||||||.!!||||||||||||:!!:!!||||||: LeuAlaGlyIleLeuValValIlePheLysAlaMetAsnTyrGlnIleHisGlnLysS 454276 : CTCGCTGGAATACTCGTCGTGATTTTTAAGGCTATGAATTACCAAATTCATCagaaaa : 454335 79 : snIleGluArgLeuIleSerLysIleLeuLysCysAlaAspAspIleValGluPheSe : 97 ::||| :::|||:!!..! ! ||||||!!.||||||||||||:!! !..!||||| erIleIleLysLeuLeuAspAspIleLeuAsnCysAlaAspAspLeuCysArgPheSe 454336 : gtataattaaattgCTCGACGACATATTGAACTGTGCTGATGATCTCTGCAGATTTTC : 454392 98 : r{V} >>>> Target Intron 1 >>>> {al}AspSerAspSerValThrAsp : 105 |{:} 1902 bp {!!}|||!!!!!:!!! !! ! !! r{I}++ --{le}AspThrGluThrAsnLysTyr 454393 : C{A}gt.........................ta{TA}GATACCGAAACGAATAAATAC : 456318 106 : IleIleLysArgHisTyrThrPheAsnLysIleIlePheHisGlyPheArgAlaIleG : 125 ||||||!!.|||:::||| |||||||||::::!!|||:!!||||||!!! !:!!| IleIleAsnArgTyrTyrLysPheAsnLysValValPheTyrGlyPheSerMetLeuG 456319 : ATCATCAACCGATactataaatttaacaaagtaGTTTTCTACGGGTTCAGCATGTTAG : 456378 126 : lyCysPheLeuValIleAlaLeuLeuLeuPheSerProValLysAspGlyLeuProIl : 144 ||||| !!|||! !||||||||||||!!!|||||||||:!!:!!:!!||||||||||| lyCysValLeuGlyIleAlaLeuLeuPhePheSerProLeuGlnAsnGlyLeuProIl 456379 : GATGCGTTTTAGGAATAGCTCTGCTATTTTTCTCGCCTCTGCAGAACGGTTTGCCCAT : 456435 145 : eArgAlaLysTyrProPheAsnThrThrIlePheProTyrArgGluIleAlaLeuAla : 163 |||||||||||||||||||||||||||||||! !|||!:!|||||||||!.!|||||| eArgAlaLysTyrProPheAsnThrThrIleSerProPheArgGluIleGlyLeuAla 456436 : CAGAGCAAAGTATCCTTTTAACACCACTATATCTCCTTTCCGAGAGATTGGTTTGGCT : 456492 164 : ValGluSerValAlaValSerSerGlyValLeuAlaIleLeuSerMetAspGlyLeuT : 183 ||||||!!! !!|||||||||.!!|||:!!|||::!|||:!!:!!||||||..!:!!| ValGluThrPheAlaValSerGlyGlyLeuLeuSerIleValAlaMetAspAsnIleT 456493 : GTCGAAACTTTTGCTGTTTCTGGTGGTTTATTGAGCATAGTTGCCATGGACAATATCA : 456552 184 : hrLeuLeuMetCysAsnTyrThrThrMetGlnPheAspIleLeuAsnValAsnPheGl : 202 || !:!!||||||!:! ! ! !||| |||||||||!!:||||||||| !||||| hrAlaMetMetCysSerGlnIleThrAlaGlnPheAspMetLeuAsnValLeuPheGl 456553 : CTGCAATGATGTGCAGCCAGATCACTGCTCAGTTCGATATGTTGAACGTACTTTTTGA : 456609 203 : uAsnCysAsnArgArgThrAlaAsn{A} >>>> Target Intron 2 >>>> { : 211 |!!.|||!.!!!!!:!..!! !|||{!} 849 bp { uLysCysThrSerGlnValGluAsn{L}-- ++{ 456610 : GAAGTGTACTAGTCAAGTGGAGAAT{A}aa.........................ag{ : 457486 212 : sn}ThrGlySerValTyrArgArgProAsnAspThrPheMetThrArgTyrLysThrC : 230 !.}|||..! !!:!! !!!:!! !! !:!!:!!||||||:!: !||||||||||||| ys}ThrAsnArgIleAsnLysThrHisAspAsnThrPheLeuArgArgTyrLysThrC 457487 : AA}ACCAATCGAATTAACAAGACGCACGACAACACGTTTCTTCGTCGTTACAAGACCT : 457542 231 : ysLeuArgPheHisGlnGlnLeuMetSerThrThrAsnAspTyrAsnAsnIlePheSe : 249 |||||!:!|||||||||::!|||!!:|||! !|||!!.|||||||||!..|||!:!|| ysLeuGlnPheHisGlnArgLeuIleSerIleThrLysAspTyrAsnArgIleTyrSe 457543 : GTCTGCAATTTCATCAGAGATTGATCTCCATAACCAAAGATTACAACAGAATCTACAG : 457599 250 : rProSerValPheValGlnMetLeuSerSerThrSerIleIleCysLeuThrGlyPhe : 268 | !!|||:!!||||||||||||:!!||||||||||||||||||||||||||||||||| rSerSerMetPheValGlnMetIleSerSerThrSerIleIleCysLeuThrGlyPhe 457600 : CTCGAGCATGTTCGTCCAGATGATCTCCAGCACTTCGATTATTTGCTTAACTGGTTTC : 457656 269 : GlnAlaValValValArgHis : 275 ||||||||||||||||||:!! GlnAlaValValValArgTyr 457657 : CAAGCTGTCGTGGTAAGATAT : 457679 vulgar: Lalb_14701 0 275 . KQ414618.1 454103 457679 + 771 M 97 291 S 0 1 5 0 2 I 0 1898 3 0 2 S 1 2 M 112 336 S 0 1 5 0 2 I 0 845 3 0 2 S 1 2 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 454104 457679 771 + . gene_id 1 ; sequence Lalb_14701 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 454104 454395 . + . KQ414618.1 exonerate:protein2genome:local exon 454104 454395 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 454396 454397 . + . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 454396 456297 . + . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 456296 456297 . + . intron_id 0 ; splice_site "TA" KQ414618.1 exonerate:protein2genome:local cds 456298 456636 . + . KQ414618.1 exonerate:protein2genome:local exon 456298 456636 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 456637 456638 . + . intron_id 2 ; splice_site "AA" KQ414618.1 exonerate:protein2genome:local intron 456637 457485 . + . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 457484 457485 . + . intron_id 1 ; splice_site "ag" KQ414618.1 exonerate:protein2genome:local cds 457486 457679 . + . KQ414618.1 exonerate:protein2genome:local exon 457486 457679 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 454104 457679 771 + . alignment_id 1 ; Query Lalb_14701 ; Align 454104 1 291 ; Align 456300 99 336 ; Align 457488 212 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14700 [mRNA] [translate_table: standard] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 240 -> 299 Target range: 3178740 -> 3178917 241 : AsnGluSerGluGlyIleTyrAspAlaThrTyrGluCysGlyTrpLeuAsnLeuLy : 259 ::!:!!|||||| !:!! !!!:|||! !|||||| ! !||| ! ||| SerGlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuPr 3178741 : TCCCAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCC : 3178795 260 : sSerAsnGluAlaLysSerLeuIleLeuValMetAlaArgSerLysLysProLeuP : 278 !!!:!! ! !|||..!|||:!:|||:!!|||||||||||||||::!|||:!! oThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValL 3178796 : CACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTA : 3178852 279 : heValSerAlaGlyLysLeuPheProMetSerTyrLeuThrPheGlyAsnValIle : 296 :!!!!!::!||| ! :!! !! !:!:||| !:!!||| !::!|||! ! ysMetThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerValSer 3178853 : AAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTTAGT : 3178906 297 : LysIleSer : 299 !:!|||||| ArgIleSer 3178907 : AGAATTTCC : 3178917 vulgar: Lalb_14700 240 299 . KQ414646.1 3178740 3178917 + 106 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178741 3178917 106 + . gene_id 1 ; sequence Lalb_14700 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178741 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178741 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178741 3178917 106 + . alignment_id 1 ; Query Lalb_14700 ; Align 3178741 241 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14680 [mRNA] [translate_table: standard] Target: KQ414667.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold102, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 269 -> 323 Target range: 801758 -> 801445 270 : GlyLysMetLeuArgLysAspLeuValLeuValIleLeuArgSerArgIleProCysC : 289 |||!.. !!! !:!!..!||| !:!!:!!!!::!!|||||||||||||||||| GlySerArgPheSerGlnSerLeuGlnIleMetMetMetArgSerArgIleProCysL 801758 : GGTAGTCGTTTCTCTCAGAGTCTTCAGATCATGATGATGCGCTCGAGGATACCATGCA : 801701 290 : ysLeuThrAlaLysGlyPhePheProIleSerLeuGluThrTyrThrLys >>>> T : 306 :!!|||||| !|||!:! !!!:|||||||||!:!!:!:!!||| ysIleThrAlaAlaLysPheTyrSerMetSerLeuGluSerPheSerLys++ 801700 : AGATAACCGCCGCTAAATTCTACAGCATGTCCTTGGAGAGCTTCTCGAAGgt...... : 801648 307 : arget Intron 1 >>>> ValTrpThrThrAlaMetSerTyrPheThrLeuLeuA : 318 151 bp ||| !:!|||:!!.!.||||||||||||:!!|||! ++ValLeuSerThrSerPheSerTyrPheThrValLeuT 801647 : ...................agGTACTCAGCACGTCTTTCTCCTACTTCACGGTCCTCA : 801463 319 : rgGlnThrMetAspAsp : 323 ! |||! |||||| hrAlaThrLysAspAsp 801462 : CAGCCACCAAAGACGAC : 801446 vulgar: Lalb_14680 269 323 . KQ414667.1 801758 801445 - 125 M 36 108 5 0 2 I 0 147 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414667.1 exonerate:protein2genome:local gene 801446 801758 125 - . gene_id 1 ; sequence Lalb_14680 ; gene_orientation + KQ414667.1 exonerate:protein2genome:local cds 801651 801758 . - . KQ414667.1 exonerate:protein2genome:local exon 801651 801758 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 801649 801650 . - . intron_id 1 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801500 801650 . - . intron_id 1 KQ414667.1 exonerate:protein2genome:local splice3 801500 801501 . - . intron_id 0 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801446 801499 . - . KQ414667.1 exonerate:protein2genome:local exon 801446 801499 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local similarity 801446 801758 125 - . alignment_id 1 ; Query Lalb_14680 ; Align 801759 270 108 ; Align 801500 306 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14677 [mRNA] [translate_table: standard] Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 339 -> 386 Target range: 358648 -> 358789 340 : TyrAsnSerMetTrpTyrArgIleProProLysSerGlnLysLeuLeuLeuPheIleL : 359 |||!:!||| ||||||! ! ! !! ! :!!|||||| !||||||!:!|||: TyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuLeuTyrIleM 358649 : TACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGTTATACATCA : 358706 360 : euMetLysSerAlaProGluValGlnPheAsnLeuSerGlyLeuPheValProCysTy : 378 !!... ! ||| !! !!!: !.!.|||::::!!.!!||||||||||||||| !!|| etGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheValProSerTy 358707 : TGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGTGCCGAGTTA : 358763 379 : rGlnGlyPheThrAlaValIleAsp : 386 ||||||||||:!!.!!|||! !||| rGlnGlyPheSerThrValThrAsp 358764 : CCAAGGATTTTCTACGGTAACAGAT : 358789 vulgar: Lalb_14677 339 386 . KQ414693.1 358648 358789 + 119 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358649 358789 119 + . gene_id 1 ; sequence Lalb_14677 ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 358649 358789 . + . KQ414693.1 exonerate:protein2genome:local exon 358649 358789 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358649 358789 119 + . alignment_id 1 ; Query Lalb_14677 ; Align 358649 340 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14677 [mRNA] [translate_table: standard] Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 66 -> 111 Target range: 358648 -> 358783 67 : TyrAsnSerLeuTrpTyrCysLeuProProLysSerGlnLysIleLeuLeuPheIleL : 86 |||!:!||| !|||||| ! ! !! ! :!!||||||! !||||||!:!|||: TyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuLeuTyrIleM 358649 : TACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGTTATACATCA : 358706 87 : euMetLysThrAlaThrGluValGlnPheAsnLeuAlaGlyLeuPheValProCysTy : 105 !!... ! :!! ! !!!: !.!.|||::::!!!.!||||||||||||||| !!|| etGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheValProSerTy 358707 : TGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGTGCCGAGTTA : 358763 106 : rGlnGlyPheThrThrIle : 111 ||||||||||:!!|||:!! rGlnGlyPheSerThrVal 358764 : CCAAGGATTTTCTACGGTA : 358783 vulgar: Lalb_14677 66 111 . KQ414693.1 358648 358783 + 114 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358649 358783 114 + . gene_id 2 ; sequence Lalb_14677 ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 358649 358783 . + . KQ414693.1 exonerate:protein2genome:local exon 358649 358783 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358649 358783 114 + . alignment_id 2 ; Query Lalb_14677 ; Align 358649 67 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14707 [mRNA] [translate_table: standard] Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 163 -> 212 Target range: 358648 -> 358795 164 : TyrAsnSerLeuTrpTyrArgIleProProArgMetGlnLysMetValLeuPheThrM : 183 |||!:!||| !||||||! ! ! !! !! ! ||||||! :!!|||!:!! !| TyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuLeuTyrIleM 358649 : TACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGTTATACATCA : 358706 184 : etMetLysThrGlnAlaAlaValGluLeuAsnCysAlaGlyLeuPheThrProCysTy : 202 ||... ! :!! ! !! ! !.!.!!!::: !!.!|||||||||..!||| !!|| etGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheValProSerTy 358707 : TGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGTGCCGAGTTA : 358763 203 : rGluGlyPheAlaThrValThrAspThrIle : 212 |:!!||||||:!!||||||||||||:!!||| rGlnGlyPheSerThrValThrAspSerIle 358764 : CCAAGGATTTTCTACGGTAACAGATTCTATC : 358795 vulgar: Lalb_14707 163 212 . KQ414693.1 358648 358795 + 101 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358649 358795 101 + . gene_id 1 ; sequence Lalb_14707 ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 358649 358795 . + . KQ414693.1 exonerate:protein2genome:local exon 358649 358795 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358649 358795 101 + . alignment_id 1 ; Query Lalb_14707 ; Align 358649 164 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14685 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 801 Query range: 3 -> 386 Target range: 1385622 -> 1387955 4 : AsnSerLysThrValIleThrSerProIleValPheSerLeuArgMetIleGlyAl : 22 !.!|||! !|||:!!|||!.! !!|||:!:! !!:!|||||||||:!:.!!||||| ThrSerThrThrIleIleAsnArgProLeuGluTyrSerLeuArgLeuPheGlyAl 1385623 : ACTTCGACGACTATAATTAATCGTCCATTGGAATATAGCCTCCGTCTATTTGGCGC : 1385677 23 : aGluProArgSerSerArgArgIleLeuGlnArgIleThrCysSerIleLeuMetM : 41 | !||| !|||||| ! !.!!|||:!!!!!|||! !!! |||! :!!||| aTrpProAspSerSerTyrSerPheLeuLysSerIleIleTrpSerThrIleMetA 1385678 : CTGGCCAGATTCTTCCTATTCATTTCTGAAAAGTATTATTTGGTCGACGATAATGG : 1385734 42 : etSerSerLeuSerMetGlnPheTrpTyrValAlaSerTyrSerLysAsnGluGlu : 59 !:: ||| ...|||::!|||||| ! !!!!:!!! !!:!::: laThrPheLeuMetPheGlnTyrTrpTyrCysIleThrHisIleArgSer---Gly 1385735 : CAAcgtttttaatgtttcaataTTGGTATTGTATTACTCATATTAGATCA---ggt : 1385785 60 : LeuThrAspLeuLeuAspGlyLeuSerValIleLeuSerAsnGlyGlyThrPheVa : 78 ||| |||||||||||||||||||||:!!! !|||||||||..! !..!|||:! LeuIleAspLeuLeuAspGlyLeuSerIleThrLeuSerAsnSerLeuValPheLe 1385786 : ttaattgatttattgGACGGATTGAGTATTACTTTATCAAATTCACTCGTCTTTCT : 1385842 79 : lLysMetValIleIleTrpTrpAsnHis{Ar} >>>> Target Intron 1 > : 88 !|||:!!:!!||||||||| :!! !{||} 486 bp uLysLeuIleIleIleTrpLeuHisSer{Ar}++ 1385843 : CAAATTGATTATTATTTGGCTTCATAGT{CG}gt...................... : 1385876 89 : >>> {g}MetPhePheAsnAlaLeuThrIleIlePheGluAspTrpLysAsnLeu : 104 {|}! |||!:!..! !||||||! !:!!|||||||||!! !!.|||! ! ++{g}ThrPheTyrGlyIleLeuThrThrValPheGluAspCysAsnAsnTyr 1385877 : ...ag{A}ACATTTTATGGCATTCTGACAACCGTATTCGAGGACTGCAATAATTAT : 1386406 105 : AspSerIleGlyArgAsnLysArgPheMetValAspLysAlaLeuMetSerLeuAr : 123 ! !|||! ...|||||||||...|||..!|||||||||:!!:!!|||! !|| AlaSerThrValGluAsnLysArgIleMetThrAspLysAlaMetLeuSerSerAr 1386407 : GCTTCTAccgttgaaaataaacgaataatgACAGATAAAGCTATGTTGTCTTCTCG : 1386463 124 : gIleSerAsnLeuLeuIleValAlaTyrSerMetSerValIleCysTyrThrIleS : 142 ||||||||||...|||||| !!:!|||!!:!!! !!:!! |||:!! ! gIleSerAsnPheLeuIleGlyTyrPheSerIleThrPheLeuValTyrSerGlyL 1386464 : tatctcaaattttttaattggctATTTTTCGATCACGTTCCTTGTATATTCAGGAC : 1386520 143 : erSerLeuPheIleSerGlyAspSerGlyGluGluGluLeuLeuProSerLysArg : 160 !:!!||| ! :!!! ! |||..!! !:!!.!.! !! !:!! !!!..:::||| euAlaLeuValLeuPhe---AspGluAspGlnAsnGlyProValSerLysGlnArg 1386521 : TTGCTCTAGTATTATTT---GATGAAGATCAGAATGGACCGGTTTCCAaacaaagg : 1386571 161 : LysLeuLeuLeuLysMetArgPheProPheGluValMetPheSerProValTyrGl : 179 |||...|||::::::|||..!||||||||||||!.!! !!|||||| ||||| LysPheLeuIleArgMetGluPheProPheGluAlaThrValSerProArgTyrGl 1386572 : aaatttttaattagaatggAATTTCCTTTCGAAGCTACAGTCTCTCCACgttatga : 1386628 180 : uIleValIleValAlaGlnPheLeuLeuGluTyrPheIleAlaPheValAlaGlyM : 198 ||||::::::|||...||||||:::...||| ||||||!.!!:!! !|||!.!! uIleIleLeuValValGlnPheIlePheGluAlaPheIleValTyrGlyAlaAlaT 1386629 : aattattctagttgtacaatttatattcgaagcATTTATAGTTTATGGAGCAGCTA : 1386685 199 : etPheMetAlaLeuLeuAlaAlaLeu >>>> Target Intron 2 >>>> V : 207 ! !!:||||||:!!|||!.!||| 399 bp : hrSerIleAlaLeuIleAlaValLeu++ ++I 1386686 : CATCGATAGCCCTAATTGCAGTACTAgt.........................agA : 1387111 208 : alLeuHisValGlySerGlnIleAspIleMetCysGlnGluLeuIleAspLeuPro : 225 !!||||||||||||.!!|||||||||:!!:!!||||||.!.:!!! !|||:!! !! leLeuHisValGlyGlyGlnIleAspLeuLeuCysGlnAsnMetArgAspIleSer 1387112 : TATTACATGTTGGTGGTCAGATCGATTTATTGTGTCAAAACATGAGAGACATTTCT : 1387165 226 : <->AsnHisGlnGlnGluGluArgLeuSerMet<->PheLysSerLeuValValGl : 242 ||||||:!!:!!:!!! !! !! !!.!:!! .!.|||..!:!!||||||:: ArgAsnHisGluLysLysValProGlnLysLeuThrIleLysAspValValValAr 1387166 : CGTAATCATGAGAAGAAAGTACCGCAAAAACTGACAATAAAGGATGTCGTTGTTAG : 1387222 243 : nHisGlnLysIleIleHisLeuGlyGluCysIleArgAspLeuPheIleAsnIleA : 261 !||||||::!||||||!..|||..!:!! !|||..! :!!|||! ! !!|||: gHisGlnArgIleIleArgLeuSerLysAsnIleGluThrValPheThrTyrIleS 1387223 : GCATCAACGAATTATACGACTGTCTAAAAATATCGAGACAGTTTTTACTTATATAT : 1387279 262 : laLeuValGlnPheLeuSerAsnIleLeuValIleCysCysLeuGlyPheLeuLeu : 279 !!||| |||||||||||||||:::||||||||||||! !:!!.!!|||:!!||| erLeuCysGlnPheLeuSerAsnMetLeuValIleCysPheIleSerPheValLeu 1387280 : CATTATgccaatttttatcgaatatgcTGGTTATCTGTTTCATAAGCTTCGTTTTG : 1387333 280 : ValAsn >>>> Target Intron 3 >>>> SerLeuGlyThrGluGlyGly : 288 |||!.! 85 bp ||||||..!|||||| ! ! ValThr++ ++SerLeuAsnThrGluGlnThr 1387334 : GTAACCgt.........................agTCCTTGAACACGGAACAGACA : 1387445 289 : ProSerIleIleLeuLysPheLeuProPheTyrValAlaAlaAsnSerGluAlaPh : 307 !!.!!:!!|||||||||! !!!!|||!:!|||||||||!.!|||!!!|||||||| ThrGlyLeuIleLeuLysCysPheProTyrTyrValAlaValAsnCysGluAlaPh 1387446 : ACTGGATTAATACTGAAATGTTTTCCCTATTACGTTGCTGTTAATTGTGAAGCATT : 1387502 308 : eValLeuCysTyrThrGlyGluTyrLeuIleSerLys >>>> Target Intro : 320 |:!!||||||||||||||||||||||||! !|||||| 79 bp eIleLeuCysTyrThrGlyGluTyrLeuThrSerLys++ 1387503 : CATTTTATGTTATACCGGAGAATATCTAACCTCTAAGgt................. : 1387543 321 : n 4 >>>> SerAspAspValArgArgAlaValCysAspMetAspTrpTyrLysL : 335 |||:!: !:!!! !!:!:!:||| :::... |||||| ! | ++SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspL 1387544 : ........agagtgAACGTATTACACAATCtgtgtacaattttctttggTACGATC : 1387665 336 : euAsnAsnArgAspMetGlnLeuLeuLeuLeuIleLeuLeuArgSerGlnLysGlu : 353 ||!!. !|||!!: !::::::::|||||||||:::|||||||||||||||||| euLysProArgGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGlu 1387666 : TAAAACCTCGAGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAG : 1387719 354 : LeuThrLeuSerAlaGlyLysPheValValLeuSerValGluAlaPheAlaThr : 372 |||! !|||!!!||||||||||||||| !||||||:!!! |||||||||!.. LeuIleLeuThrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387720 : TTAATACTCACTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt : 1387776 373 : >>>> Target Intron 5 >>>> MetLeuLysAlaSerAlaSerTyrIleSe : 381 135 bp ||||||||||||||||||||||||:!!|| ++MetLeuLysAlaSerAlaSerTyrValSe 1387777 : .........................agatgCTAAAAGCTTCAGCCTCGTACGTATC : 1387938 382 : rIleLeuLeuAlaMet : 386 |:!!|||! !|||||| rValLeuHisAlaMet 1387939 : TGTTTTGCATGCAATG : 1387955 vulgar: Lalb_14685 3 386 . KQ414716.1 1385622 1387955 + 801 M 54 162 G 1 0 M 29 87 S 0 2 5 0 2 I 0 482 3 0 2 S 1 1 M 59 177 G 1 0 M 58 174 5 0 2 I 0 395 3 0 2 M 19 57 G 0 3 M 10 30 G 0 3 M 46 138 5 0 2 I 0 81 3 0 2 M 38 114 5 0 2 I 0 75 3 0 2 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1385623 1387955 801 + . gene_id 1 ; sequence Lalb_14685 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1385623 1385873 . + . KQ414716.1 exonerate:protein2genome:local exon 1385623 1385873 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local splice5 1385874 1385875 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1385874 1386359 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1386358 1386359 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1386360 1386711 . + . KQ414716.1 exonerate:protein2genome:local exon 1386360 1386711 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local splice5 1386712 1386713 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1386712 1387110 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1387109 1387110 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387111 1387341 . + . KQ414716.1 exonerate:protein2genome:local exon 1387111 1387341 . + . insertions 6 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387342 1387343 . + . intron_id 3 ; splice_site "Gt" KQ414716.1 exonerate:protein2genome:local intron 1387342 1387426 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1387425 1387426 . + . intron_id 2 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387427 1387540 . + . KQ414716.1 exonerate:protein2genome:local exon 1387427 1387540 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387541 1387542 . + . intron_id 4 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387541 1387619 . + . intron_id 4 KQ414716.1 exonerate:protein2genome:local splice3 1387618 1387619 . + . intron_id 3 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 5 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 5 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 4 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1385623 1387955 801 + . alignment_id 1 ; Query Lalb_14685 ; Align 1385623 4 162 ; Align 1385785 59 87 ; Align 1386361 89 177 ; Align 1386538 149 174 ; Align 1387111 207 57 ; Align 1387171 226 30 ; Align 1387204 236 138 ; Align 1387427 282 114 ; Align 1387620 320 156 ; Align 1387911 372 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14685 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 331 -> 386 Target range: 1409085 -> 1409528 332 : TrpTyrLysLeuAsnAsnArgAspMetGlnLeuLeuLeuLeuIleLeuLeuArgSe : 350 ||||||!!.:!!:!!:::!:!!!:! !:!|||:!!||||||:!!:!!|||||||| TrpTyrAsnMetHisSerLysGluSerArgLeuMetLeuLeuValIleLeuArgSe 1409086 : TGGTATAATATGCATTCGAAGGAAAGCCGACTTATGTTGCTTGTAATACTACGATC : 1409140 351 : rGlnLysGluLeuThrLeuSerAlaGlyLysPheValValLeuSerValGluAlaP : 369 |||||||! !!!!|||...::: |||||||||... ||||||:!!|||::!| rGlnLysGlyPheThrPheThrPheGlyLysPheAlaSerLeuSerMetGluSerP 1409141 : ACAGAAAGGATTTACtttcacttttggaaaatttgcaagtCTTTCCATGGAAAGTT : 1409197 370 : heAlaThr >>>> Target Intron 1 >>>> MetLeuLysAlaSerAlaS : 378 ||||| ! 278 bp ::::!!||||||||||||| heAlaGly++ ++IleMetLysAlaSerAlaS 1409198 : TTGCAGGCgt.........................agattATGAAAGCTTCTGCAT : 1409502 379 : erTyrIleSerIleLeuLeuAlaMet : 386 |||||||||||:!!|||||||||||| erTyrIleSerValLeuLeuAlaMet 1409503 : CGTATATATCCGTATTGCTCGCAATG : 1409528 vulgar: Lalb_14685 331 386 . KQ414716.1 1409085 1409528 + 151 M 40 120 5 0 2 I 0 274 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1409086 1409528 151 + . gene_id 2 ; sequence Lalb_14685 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1409086 1409205 . + . KQ414716.1 exonerate:protein2genome:local exon 1409086 1409205 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1409206 1409207 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1409206 1409483 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1409482 1409483 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409484 1409528 . + . KQ414716.1 exonerate:protein2genome:local exon 1409484 1409528 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1409086 1409528 151 + . alignment_id 2 ; Query Lalb_14685 ; Align 1409086 332 120 ; Align 1409484 372 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14685 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 206 -> 280 Target range: 1394161 -> 1394389 207 : ValLeuHisValGlySerGlnIleAspIleMetCysGlnGluLeuIleAspLeuPr : 225 :!!!!!|||:!!|||.!!||||||!!:!!::!! :!!! ||| :::::: IlePheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAsnIleSe 1394162 : ATATTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaatatttc : 1394216 226 : oAsnHisGlnGlnGluGluArgLeuSer<-><->MetPheLysSerLeuValValG : 242 .!.:!!:!!.!.||||||||| ! !|||||||||:!! !: rIleLysAspGluLysHisArgLeuSerArgAsnThrThrLysSerLeuIleHisA 1394217 : tattaaagATGAGAAACACAGATTATCGAGAAACACCACCAAATCATTAATTCACA : 1394273 243 : lnHisGlnLysIleIleHisLeuGlyGluCysIleArgAspLeuPheIleAsnIle : 260 :!|||!!.::!|||||| ! !..!!!:! !|||..!..!|||||| ! !!||| rgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIle 1394274 : GACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACATT : 1394327 261 : AlaLeuValGlnPheLeuSerAsnIleLeuValIleCysCysLeuGlyPheLeuLe : 279 ||||||:!!|||!::|||!!!|||! |||||||||||||||:!!|||||||||:! AlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGlyPheLeuIl 1394328 : GCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGATTCTTAAT : 1394384 280 : uVal : 280 !||| eVal 1394385 : AGTA : 1394389 vulgar: Lalb_14685 206 280 . KQ414716.1 1394161 1394389 + 137 M 28 84 G 0 6 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394162 1394389 137 + . gene_id 3 ; sequence Lalb_14685 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1394162 1394389 . + . KQ414716.1 exonerate:protein2genome:local exon 1394162 1394389 . + . insertions 6 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394162 1394389 137 + . alignment_id 3 ; Query Lalb_14685 ; Align 1394162 207 84 ; Align 1394252 235 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14685 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 331 -> 386 Target range: 1402471 -> 1402805 332 : TrpTyrLysLeuAsnAsnArgAspMetGlnLeuLeuLeuLeuIleLeuLeuArgSe : 350 |||||| ! |||..!:::! !!!:! |||||||||:!!! !:!!:!!|||||||| TrpTyrAspLeuArgSerThrGluSerGlnLeuLeuIleProValIleLeuArgSe 1402472 : TGGTACGATTTACGTTCAACTGAAAGCCAACTTCTAATACCTGTAATATTGAGGTC : 1402526 351 : rGlnLysGluLeuThrLeuSerAlaGlyLysPheValValLeuSerValGluAlaP : 369 |||||||! !!!|||!..::: ||||||||| ||||||:!!|||::!| rGlnLysGlyPheThrPheThrPheGlyLysPheSerSerLeuSerLeuGluSerP 1402527 : TCAAAAGGGTTTCACGTttacttttggaaaattttcaagtctCTCCTTGGAAAGCT : 1402583 370 : heAlaThr >>>> Target Intron 1 >>>> MetLeuLysAlaSerAlaS : 378 ||.!!.!! 169 bp !!::!!|||!.!||||||| heThrAla++ ++IleMetLysValSerAlaS 1402584 : TTACGGCCgt.........................agATCATGAAAGTCTCAGCAT : 1402779 379 : erTyrIleSerIleLeuLeuAlaMet : 386 |||||||||||:!!|||||||||:!! erTyrIleSerValLeuLeuAlaVal 1402780 : CATATATATCAGTACTTCTTGCAGTG : 1402805 vulgar: Lalb_14685 331 386 . KQ414716.1 1402471 1402805 + 134 M 40 120 5 0 2 I 0 165 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1402472 1402805 134 + . gene_id 4 ; sequence Lalb_14685 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1402472 1402591 . + . KQ414716.1 exonerate:protein2genome:local exon 1402472 1402591 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1402592 1402593 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1402592 1402760 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1402759 1402760 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402761 1402805 . + . KQ414716.1 exonerate:protein2genome:local exon 1402761 1402805 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1402472 1402805 134 + . alignment_id 4 ; Query Lalb_14685 ; Align 1402472 332 120 ; Align 1402761 372 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14685 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 206 -> 280 Target range: 1401021 -> 1401231 207 : ValLeuHisValGlySerGlnIleAspIleMetCysGlnGluLeuIleAspLeuPr : 225 |||||||||:!!|||!!!||||||||||||||||||!:!.!.|||:!!|||:!! ! ValLeuHisLeuGlyCysGlnIleAspIleMetCysArgAsnLeuLeuAspValSe 1401022 : GTACTTCATCTAGGATGTCAAATCGACATCATGTGCCGAAATTTGCTAGACGTTTC : 1401076 226 : oAsnHisGlnGlnGluGluArgLeuSerMetPheLysSerLeuValValGlnHisG : 244 ! ! ! .!. :::::: ...||| ...::: !::!|||| rPheLysAspGlyLysGln------------IleLysPhePheIleAsnArgHisG 1401077 : CTTCAAAGACggaaaacaa------------ataaaattcttcattaACAGACATC : 1401121 245 : lnLysIleIleHisLeuGlyGluCysIleArgAspLeuPheIleAsnIleAlaLeu : 262 ||:!!|||||| !!!!!.!||| ! |||..! ! ||||||! ! !!!!:|||||| lnGluIleIleValPheAlaGluArgIleGluLysLeuPheThrTyrMetAlaLeu 1401122 : AGGAAATTATTGTTTTTGCAGAAAGAATTGAGAAACTTTTTACATACATGGCTCTC : 1401175 263 : ValGlnPheLeuSerAsnIleLeuValIleCysCysLeuGlyPheLeuLeuVal : 280 !|||.!!:!!||||||! :!!:!!|||||||||:!!|||||||||:!!||| SerGlnLeuValSerAsnThrIleIleIleCysCysValGlyPheLeuValVal 1401176 : AGTCAACTTGTGTCCAATACGATAATTATATGTTGCGTAGGATTTCTCGTTGTA : 1401231 vulgar: Lalb_14685 206 280 . KQ414716.1 1401021 1401231 + 129 M 25 75 G 4 0 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401022 1401231 129 + . gene_id 5 ; sequence Lalb_14685 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1401022 1401231 . + . KQ414716.1 exonerate:protein2genome:local exon 1401022 1401231 . + . insertions 0 ; deletions 4 KQ414716.1 exonerate:protein2genome:local similarity 1401022 1401231 129 + . alignment_id 5 ; Query Lalb_14685 ; Align 1401022 207 75 ; Align 1401097 236 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14685 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 206 -> 279 Target range: 1408216 -> 1408423 207 : ValLeuHisValGlySerGlnIleAspIleMetCysGlnGluLeuIleAspLeuPr : 225 |||||||||:!!|||!!!||||||||||||||||||||| !|||! !!::!!|| ValLeuHisLeuGlyCysGlnIleAspIleMetCysGlnThrLeuLysGluValPr 1408217 : GTGCTTCATCTAGGTTGTCAAATCGATATTATGTGCCAGACATTAAAGGAGGTTCC : 1408271 226 : oAsnHisGlnGlnGluGluArgLeuSerMetPheLysSerLeuValValGlnHisG : 244 | :!!:!!.!.:!! !:!|||!!!.!.||| :!! !::!|||| o---TyrLysAsnLysThrGlnLeuArgPhePhe---------IleSerArgHisG 1408272 : T---TATAAGAATAAAACTCAACTGAGATTCTTC---------ATCAGCAGACATC : 1408316 245 : lnLysIleIleHisLeuGlyGluCysIleArgAspLeuPheIleAsnIleAlaLeu : 262 ||:!!|||||| !!!!.!||| ! |||..! ! ||||||! !!:!!|||||| lnGlnIleIleIlePheAlaGluArgIleGluLysLeuPheThrTyrLeuAlaLeu 1408317 : AACAGATCATCATATTTGCAGAGAGAATAGAAAAACTGTTTACGTATCTAGCACTT : 1408370 263 : ValGlnPheLeuSerAsnIleLeuValIleCysCysLeuGlyPheLeuLeu : 279 !|||.!!|||||||||! !|||:!!! !||||||:!!|||!:!:!!:!! SerGlnLeuLeuSerAsnThrLeuIleThrCysCysValGlyTyrIleIle 1408371 : AGTCAACTTCTCTCGAATACCCTAATTACTTGCTGCGTGGGTTATATTATC : 1408423 vulgar: Lalb_14685 206 279 . KQ414716.1 1408216 1408423 + 128 M 19 57 G 1 0 M 10 30 G 3 0 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408217 1408423 128 + . gene_id 6 ; sequence Lalb_14685 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1408217 1408423 . + . KQ414716.1 exonerate:protein2genome:local exon 1408217 1408423 . + . insertions 0 ; deletions 4 KQ414716.1 exonerate:protein2genome:local similarity 1408217 1408423 128 + . alignment_id 6 ; Query Lalb_14685 ; Align 1408217 207 57 ; Align 1408274 227 30 ; Align 1408304 240 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14685 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 155 -> 207 Target range: 1405944 -> 1406100 156 : LeuProSerLysArgLysLeuLeuLeuLysMetArgPheProPheGluValMetPh : 174 :!! !!:!! |||:!!||||||:!!|||||| !!!.||||||.!...!! IleThrAlaProArgGluLeuLeuIleLysMetAspLeuProPheAsnThrAsnAs 1405945 : ATAACAGCACCTCGAGAACTTTTGATAAAAATGGACTTGCCATTTAATACGAACAA : 1405999 175 : eSerProValTyrGluIleValIleValAlaGlnPheLeuLeuGluTyrPheIleA : 193 !||||||:!!||||||:!:||||||||| !|||!:!|||! !:!! ! ! !| nSerProIleTyrGluLeuValIleValLeuGlnTyrLeuCysLysValSerThrA 1406000 : TTCGCCTATTTACGAGCTGGTAATAGTTTTACAATACCTATGCAAAGTATCGACAG : 1406056 194 : laPheValAlaGlyMetPheMetAlaLeuLeuAlaAlaLeuVal : 207 |||||..! !|||:!:|||! ::!|||||| ! !:!!||| laPheThrPheGlyValPheSerSerLeuLeuLeuMetMetVal 1406057 : CTTTTACGTTTGGTGTATTCAGCAGTCTGCTTTTGATGATGGTA : 1406100 vulgar: Lalb_14685 155 207 . KQ414716.1 1405944 1406100 + 113 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1405945 1406100 113 + . gene_id 7 ; sequence Lalb_14685 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1405945 1406100 . + . KQ414716.1 exonerate:protein2genome:local exon 1405945 1406100 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1405945 1406100 113 + . alignment_id 7 ; Query Lalb_14685 ; Align 1405945 156 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14695 [mRNA] [translate_table: standard] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 191 -> 284 Target range: 42754 -> 42472 192 : ValLeuSerLeuPheSerValThrValCysMetTyrMetSerGlyIleLeuSerCysGln : 211 ||| :::|||:::||||||! ! ! !.!.!!! !.!!:!!|||...! ValSerPheIlePheThrValThrGlyIleCysCysPheThrMetPheIleSerAlaPro 42754 : gtttctttcattttcacagTAACTGGAATATGTTGCTTCACAATGTTTATCTCTGCGCCT : 42697 212 : IleIleProGluIleLeuAsnMetSerIleSerAsnAsnIleThrArgPheIleGlnHis : 231 !||||||.!.:!!! !:!!:!:! !:!!|||!!.||| :!!||| :!: ! TyrIleProHisValTyrAspValMetLeuSerLysAsnGluSerArgLysLeuGlyPhe 42696 : TATATACCGCATGTATATGATGTTATGTTATCGAAAAACGAGTCACGAAAGTTGGGTTTC : 42637 232 : ValArgGlyGluPhePhe<->LeuAspGlnAspLysTyrTyrAlaLeuIleLeuSerTyr : 250 :!! ! !! !:!!:! :!!|||||||||||||||||| !! !|||:!!:!!:!! IleTyrProAlaTyrTyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAlaHis 42636 : ATTTACCCTGCCTATTATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCTCAC : 42577 251 : LeuIleMetSerLeuIleCysThrAlaValThrSerThrAlaMetAlaLeuGlnTrpIle : 270 :!!! ! .!! !:!! ..! ! !!|||! !! !:!! ! ! ! !::!!: MetThrSerGlyGlyLeuValValPhePheThrPheIleSerCysAspThrIleTyrMet 42576 : ATGACATCTGGGGGCTTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTACATG : 42517 271 : MetIleIleAsnHisAlaCysGlyMetPheAlaIlePheGly : 284 ! |||:!:.!.||||||||||||:!!!!. !|||! !||| AsnIleValGlnHisAlaCysGlyLeuLeuLeuIleSerGly 42516 : AATATCGTGCAACACGCGTGCGGATTGTTGTTGATTTCTGGG : 42473 vulgar: Lalb_14695 191 284 . KQ414772.1 42754 42472 - 101 M 46 138 G 0 3 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42473 42754 101 - . gene_id 1 ; sequence Lalb_14695 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42473 42754 . - . KQ414772.1 exonerate:protein2genome:local exon 42473 42754 . - . insertions 3 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42473 42754 101 - . alignment_id 1 ; Query Lalb_14695 ; Align 42755 192 138 ; Align 42614 238 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14702 [mRNA] [translate_table: standard] Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 201 Query range: 64 -> 138 Target range: 62088 -> 63134 65 : LeuLeuAspGluSerThrThrMetMetAspSerValPheHisGlnLysTrpTyrAspHis : 84 !!!|||:!! !!||||||:!!:!: !|||..!||| ! |||:!!::!|||||| ! ! PheLeuAsn***SerThrSerValAlaAspAspValValHisGluArgTrpTyrPheCys 62089 : TTCTTGAATTAGAGCACATCTGTAGCGGACGATGTAGTACATGAACGATGGTATTTCTGT : 62146 85 : AspIleSerLeuGlnArgSerValMetLeuMetIleMetAlaThrLysLeuLysCysGlu : 104 |||:!! !:!!|||||| !:!! :!!!!:|||:!:||| !|||:!!:!!|||..! AspValLeuValGlnArgValIleAlaMetIleIleLeuAlaAspLysMetGluCysArg 62147 : GATGTACTAGTACAACGAGTAATTGCTATGATTATTTTAGCTGATAAAATGGAATGTAGA : 62206 105 : IleSerArgIleGlnAsnValAsnLeuThrLeuProSerPheMetSer >>>> Targe : 121 :!:|||!!!.!!!:!|||:!!:!!|||||||||||||||||||||||| LeuSerSerPheArgAsnIleAspLeuThrLeuProSerPheMetSer++ 62207 : CTGTCCAGTTTTCGGAACATAGATTTAACTTTACCATCTTTTATGTCGgt.......... : 62259 122 : t Intron 1 >>>> IleLeuAsnLysAlaTyrSerValSerLeuLeuPheLeuLysS : 135 824 bp |||||||||:!!|||||||||..!||||||||||||||||||: ++IleLeuAsnGlnAlaTyrSerThrSerLeuLeuPheLeuLysA 62260 : ...............agATTCTAAACCAAGCATACTCGACTAGTTTGCTGTTTTTGAAAG : 63123 136 : erArgArgAsp : 138 !!!:! !!||| laLys***Asp 63124 : CAAAATGAGAT : 63134 vulgar: Lalb_14702 64 138 . KQ414777.1 62088 63134 + 201 M 56 168 5 0 2 I 0 820 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 62089 63134 201 + . gene_id 1 ; sequence Lalb_14702 ; gene_orientation + KQ414777.1 exonerate:protein2genome:local cds 62089 62256 . + . KQ414777.1 exonerate:protein2genome:local exon 62089 62256 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local splice5 62257 62258 . + . intron_id 1 ; splice_site "GT" KQ414777.1 exonerate:protein2genome:local intron 62257 63080 . + . intron_id 1 KQ414777.1 exonerate:protein2genome:local splice3 63079 63080 . + . intron_id 0 ; splice_site "AG" KQ414777.1 exonerate:protein2genome:local cds 63081 63134 . + . KQ414777.1 exonerate:protein2genome:local exon 63081 63134 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 62089 63134 201 + . alignment_id 1 ; Query Lalb_14702 ; Align 62089 65 168 ; Align 63081 121 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14702 [mRNA] [translate_table: standard] Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 0 -> 33 Target range: 61693 -> 61792 1 : ArgMetAlaValGlnLeuLysArgIlePheSerProAsnValThrValLeuTyrLeuSer : 20 ||||||.!!:!!..!||||||!:!:!!.!.|||||||||:!! !:!!||||||:!!!:! ArgMetThrIleMetLeuLysLysLeuLeuSerProAsnIleGlyIleLeuTyrValAsn 61694 : aggaTGACTATTATGTTGAAGAAATTACTATCTCCAAACATTGGAATACTTTACGTAAAC : 61751 21 : AsnValPheArgIleSerPheIleSerIleMetIleIle : 33 ||||||||||||.!!!!!|||:!!|||:!!||||||||| AsnValPheArgPheCysPheLeuSerLeuMetIleIle 61752 : AACGTTTTCCGGTTCTGCTTTCTAAGTTTAATGATTATA : 61792 vulgar: Lalb_14702 0 33 . KQ414777.1 61693 61792 + 107 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 61694 61792 107 + . gene_id 2 ; sequence Lalb_14702 ; gene_orientation . KQ414777.1 exonerate:protein2genome:local cds 61694 61792 . + . KQ414777.1 exonerate:protein2genome:local exon 61694 61792 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 61694 61792 107 + . alignment_id 2 ; Query Lalb_14702 ; Align 61694 1 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14706 [mRNA] [translate_table: standard] Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 382 Query range: 52 -> 190 Target range: 61693 -> 63134 53 : ArgMetAlaAlaValLeuLysGlnIlePheSerProAsnIleAlaAlaLeuTyrIleAsn : 72 ||||||.!! !:!!||||||:!!:!!.!.||||||||||||!.! !||||||:!!||| ArgMetThrIleMetLeuLysLysLeuLeuSerProAsnIleGlyIleLeuTyrValAsn 61694 : aggaTGACTATTATGTTGAAGAAATTACTATCTCCAAACATTGGAATACTTTACGTAAAC : 61751 73 : AsnValPheArgPheCysPheLeuSerIleMetValIleThr >>>> Target Intr : 87 |||||||||||||||||||||||||||:!!|||:!!|||||| 83 bp AsnValPheArgPheCysPheLeuSerLeuMetIleIleThr++ 61752 : AACGTTTTCCGGTTCTGCTTTCTAAGTTTAATGATTATAACGgt................ : 61798 88 : on 1 >>>> SerAlaAspAlaValLeuArgGlyPheIleLeuLeuTyrThrCysGlyA : 103 |||...||| ::: ...|||::::!!|||||| !|||| +-SerGlyAspAsnPheGluLysLeuIleIleValMetTyrThrIleGlyA 61799 : .........attccggagataattttgaaaaattgataattgtaATGTATACAATTGGTG : 61927 104 : laLeuMetGlnLeuTyrMetMetCysPheCysIleGlnHisLeuLeuGluAla >>>> : 121 |||||! !|||!!!|||:!::!!|||||||||||||||.!.|||:!!|||||| laLeuThrGlnPheTyrValLeuCysPheCysIleGlnGluLeuValGluAla++ 61928 : CTCTAACGCAATTTTATGTATTGTGCTTCTGTATTCAAGAGTTAGTCGAAGCGgt..... : 61983 122 : Target Intron 2 >>>> SerThrThrMetMetAspSerValPheHisLysLysTr : 133 120 bp ||||||:!!:!: !|||..!||| ! |||:!!::!|| ++SerThrSerValAlaAspAspValValHisGluArgTr 61984 : ....................agAGCACATCTGTAGCGGACGATGTAGTACATGAACGATG : 62137 134 : pTyrAspHisAspIleSerLeuGlnArgSerValMetSerMetThrLeuAlaThrLysLe : 153 |||| ! !|||:!! !:!!|||||| !:!! ! !!!:! !|||||| !|||:! pTyrPheCysAspValLeuValGlnArgValIleAlaMetIleIleLeuAlaAspLysMe 62138 : GTATTTCTGTGATGTACTAGTACAACGAGTAATTGCTATGATTATTTTAGCTGATAAAAT : 62197 154 : uLysCysGlnLeuSerArgIleArgSerIleAspLeuThrLeuProSerPheMetSer : 173 !:!!|||::!||||||!!!.!!|||!:!|||||||||||||||||||||||||||||| tGluCysArgLeuSerSerPheArgAsnIleAspLeuThrLeuProSerPheMetSer++ 62198 : GGAATGTAGACTGTCCAGTTTTCGGAACATAGATTTAACTTTACCATCTTTTATGTCGgt : 62257 174 : >>>> Target Intron 3 >>>> IleLeuAsnGlnAlaTyrSerValCysLeuLeu : 183 824 bp |||||||||||||||||||||..! !!|||||| ++IleLeuAsnGlnAlaTyrSerThrSerLeuLeu 62258 : .........................agATTCTAAACCAAGCATACTCGACTAGTTTGCTG : 63111 184 : PheLeuLysSerArgArgAsp : 190 |||||||||:!!!:! !!||| PheLeuLysAlaLys***Asp 63112 : TTTTTGAAAGCAAAATGAGAT : 63134 vulgar: Lalb_14706 52 190 . KQ414777.1 61693 63134 + 382 M 34 102 5 0 2 I 0 79 3 0 2 M 34 102 5 0 2 I 0 116 3 0 2 M 52 156 5 0 2 I 0 820 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 61694 63134 382 + . gene_id 1 ; sequence Lalb_14706 ; gene_orientation + KQ414777.1 exonerate:protein2genome:local cds 61694 61795 . + . KQ414777.1 exonerate:protein2genome:local exon 61694 61795 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local splice5 61796 61797 . + . intron_id 1 ; splice_site "GT" KQ414777.1 exonerate:protein2genome:local intron 61796 61878 . + . intron_id 1 KQ414777.1 exonerate:protein2genome:local splice3 61877 61878 . + . intron_id 0 ; splice_site "at" KQ414777.1 exonerate:protein2genome:local cds 61879 61980 . + . KQ414777.1 exonerate:protein2genome:local exon 61879 61980 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local splice5 61981 61982 . + . intron_id 2 ; splice_site "GT" KQ414777.1 exonerate:protein2genome:local intron 61981 62100 . + . intron_id 2 KQ414777.1 exonerate:protein2genome:local splice3 62099 62100 . + . intron_id 1 ; splice_site "AG" KQ414777.1 exonerate:protein2genome:local cds 62101 62256 . + . KQ414777.1 exonerate:protein2genome:local exon 62101 62256 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local splice5 62257 62258 . + . intron_id 3 ; splice_site "GT" KQ414777.1 exonerate:protein2genome:local intron 62257 63080 . + . intron_id 3 KQ414777.1 exonerate:protein2genome:local splice3 63079 63080 . + . intron_id 2 ; splice_site "AG" KQ414777.1 exonerate:protein2genome:local cds 63081 63134 . + . KQ414777.1 exonerate:protein2genome:local exon 63081 63134 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 61694 63134 382 + . alignment_id 1 ; Query Lalb_14706 ; Align 61694 53 102 ; Align 61879 87 102 ; Align 62101 121 156 ; Align 63081 173 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14699 [mRNA] [translate_table: standard] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 299 -> 349 Target range: 1345564 -> 1345714 300 : SerSerGlyIleSerGlnAlaIleTyrSerIleGlnTrpTyrArgValSerAlaPh : 318 ||||||! !!!:..!|||||| !|||! !! !.!.|||||| !:!! !!! ! SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 319 : eLeuArgCysGluAlaSerMetValMetLeuArgSerGlnLysProSerTyrIleT : 337 ! !! ! ! ..! !! !.!. !!!: !|||||||||||||||||||||:!!| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 338 : hrAlaGlyLysLeuTyrIleMetHisLeuGluAsnPhe : 349 |||||||||||!!!|||:!:.!. ||||||!..||| hrAlaGlyLysPheTyrValPheSerLeuGluThrPhe 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTC : 1345714 vulgar: Lalb_14699 299 349 . KQ414782.1 1345564 1345714 + 103 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345714 103 + . gene_id 1 ; sequence Lalb_14699 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345714 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345714 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345714 103 + . alignment_id 1 ; Query Lalb_14699 ; Align 1345565 300 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14697 [mRNA] [translate_table: standard] Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 10 -> 105 Target range: 4395124 -> 4395868 11 : PheThrPheHisLeuIleGlyThrIleThrGlnLeuLeuMetPheThrTyrSerCy : 29 |||..!! !:!!|||! !..!! ! ..!|||||||||:!:!:: !!:: !! ! PheValSerTyrLeuThrSerMetGlyValGlnLeuLeuLeuTrpCysTrpProGl 4395125 : TTTGTGTCTTATTTAACCTCGATGGGGGTGCAACTTTTGCTATGGTGTTGGCCTGG : 4395179 30 : sAspCysLeuLeuHisGluSerLeuGluIleAlaGluSerValTyrThrAlaGlnT : 48 !!!: !|||:!!!!.|||||||||||||||!.!.!. !|||||| ! ! yGluIleLeuValGlnGluSerLeuGluIleGlyHisValValTyrLeuAsn---- 4395180 : TGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGTCATGTAGTCTATCTAAAT---- : 4395233 49 : rpProLeuLeuProMetAsnAsnSerGlyLysMetLeuArgSerAspMetGlnLeu : 66 :!!||| ! !!|||! ! ! !!!:! !!:!!.!.!.:!: ||| --------IleProTrpTyrAsnLeuProProIleTyrGlnLysGlnLeuCysLeu 4395234 : --------ATACCATGGTACAATTTACCACCGATTTATCAGAAACAACTTTGCCTG : 4395278 67 : ValIleMetArgSerArgGluProCysSerMetSerAlaGlyGlyPhePheThrVa : 85 :!!|||!!:|||:!!!:!:!! !||||||!!:!!!||| ! !||| |||:! MetIleIleArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPheGlnThrLe 4395279 : ATGATCATTAGGGCCCAACAGTATTGCAGCATTACGGCATTAACGTTTCAAACGTT : 4395335 86 : lSerLeuGluThrTyrThrLys >>>> Target Intron 1 >>>> ValLe : 94 !|||:!!.!.|||! ||| 471 bp |||!! uSerIleHisThrLeuThrAla++ ++ValPh 4395336 : GTCTATTCACACGTTAACAGCCgt.........................agGTATT : 4395833 95 : uSerThrAlaAlaSerTyrPheThrLeuLeuArg : 105 !!:!|||||||||||||||||||||||||||||| eAsnThrAlaAlaSerTyrPheThrLeuLeuArg 4395834 : CAATACAGCTGCTTCGTATTTTACTTTGCTGCGA : 4395868 vulgar: Lalb_14697 10 105 . KQ414784.1 4395124 4395868 + 107 M 36 108 G 4 0 M 42 126 5 0 2 I 0 467 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4395125 4395868 107 + . gene_id 1 ; sequence Lalb_14697 ; gene_orientation + KQ414784.1 exonerate:protein2genome:local cds 4395125 4395358 . + . KQ414784.1 exonerate:protein2genome:local exon 4395125 4395358 . + . insertions 0 ; deletions 4 KQ414784.1 exonerate:protein2genome:local splice5 4395359 4395360 . + . intron_id 1 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4395359 4395829 . + . intron_id 1 KQ414784.1 exonerate:protein2genome:local splice3 4395828 4395829 . + . intron_id 0 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4395830 4395868 . + . KQ414784.1 exonerate:protein2genome:local exon 4395830 4395868 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local similarity 4395125 4395868 107 + . alignment_id 1 ; Query Lalb_14697 ; Align 4395125 11 108 ; Align 4395233 51 126 ; Align 4395830 93 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14700 [mRNA] [translate_table: standard] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 10 -> 141 Target range: 36542 -> 36935 11 : ValPheValSerLysValMetLeuLysIleLeuAsnValMetAlaAspAspTrpGluLys : 30 ::: ..!||| !!.!:!::!! :!!:!!!:! !!!: !|||||||||! !:!! IleHisThrSerLeuAlaLeuValPheLeuMetSerGlnIlePheAspAspTrpAlaGlu 36543 : attcacACGTCTCTAGCGCTAGTATTCTTAATGAGCCAAATATTCGACGACTGGGCGGAA : 36600 31 : ProLysThrAspGluGluLysAsnIleMetTyrArgTyrAlaLysMetAlaArgIleVal : 50 |||! !!!!:! !!!:::::!!! ||| !:! !||||||!!:::!|||!!::!! ProIleProGluValAspArgHisThrMetLeuLysThrAlaLysIleSerArgMetIle 36601 : CCAATCCCGGAGGTGGATCGCCACACGATGCTGAAGACCGCGAAAATTAGTCGAATGATA : 36660 51 : AlaValLeuGlyPheIlePheAlaGlyIleAlaIleLeuMetValIleValLeuProLys : 70 :!!:!!:!! !!! !|||.!..!! !:!! !:!!||| !!:!: !|||! !! SerIleValCysSerIleLeuThrTyrValMetValLeuAlaPheLeuSerLeuGlnIle 36661 : TCCATAGTCTGTTCTATCCTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATT : 36720 71 : PheGlyIleTyrIleArgHisThrThrAspGlyIleAspValPheProPheProThrTyr : 90 !::.!!! ! !!.! !:!! ! !..!:!!! ! !.!.! !.!!|||.!! TrpSerSerMetGlnAsnThrSerGluPheAsnValGlyGlyLeuLeuIleProAlaThr 36721 : TGGAGCAGCATGCAAAACACCTCGGAGTTCAACGTAGGAGGACTACTTATCCCGGCCACA : 36780 91 : TyrValTyrAspValThrArgSerProTyrTyrGluIleIleTyrPheGlyGlnIlePhe : 110 !:! !||||||..!!.!!:!|||||| !!|||||||||! !!::.!!||||||.!! ! PheProTyrAspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheVal 36781 : TTTCCATACGACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTG : 36840 111 : MetLeuValIleThrLeuLeuAlaTyrAsnGlyIleAsnIleLeuPheGlyThrIlePhe : 130 ! !|||:!:!:! !:!!..!|||::! !!.!!:!!! !!! !!!.!..!:!! ! GlyThrValLeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuVal 36841 : GGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTG : 36900 131 : LeuHisIleCysGlyGlnAlaGluAsnLeuArg : 141 |||||||||||||||||| ! !|||||| LeuHisIleCysGlyGlnLeuThrValLeuArg 36901 : TTACACATATGCGGCCAATTAACTGTTCTCCGC : 36935 vulgar: Lalb_14700 10 141 . KQ414804.1 36542 36935 + 160 M 131 393 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36543 36935 160 + . gene_id 1 ; sequence Lalb_14700 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36543 36935 . + . KQ414804.1 exonerate:protein2genome:local exon 36543 36935 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36543 36935 160 + . alignment_id 1 ; Query Lalb_14700 ; Align 36543 11 393 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14700 [mRNA] [translate_table: standard] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 13 -> 144 Target range: 31113 -> 31512 14 : SerLysValMetLeuLysIleLeuAsnValMetAlaAspAspTrpGluLysProLysThr : 33 :::|||....!. ! :!!:!!!!. !.!. !|||||||||:!!! !!!:!||| AsnLysAlaPheLysProValIleLysSerPheTyrAspAspTrpLysThrSerArgThr 31114 : aacaaagcttTCAAGCCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACc : 31171 34 : AspGluGluLysAsnIleMetTyrArgTyrAlaLysMetAlaArgIleValAlaValLeu : 53 |||||||||... !|||! !:! ||||||.!.|||!:! !:!!:!!:!!! ! LysGluGluLysGluThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIleTrp 31172 : aaggaggagaaggagacCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGG : 31231 54 : GlyPheIlePheAlaGlyIleAlaIleLeuMetValIleValLeuProLysPheGlyIle : 73 !!! :!!!!..!! !! ! !:!! !:!: !:!! !|||! ! !!:: !||| CysSerValLeuThrLeuThrMetValThrValTyrLeuSerLeuArgAlaTrpIleIle 31232 : TGCTCAGTATTAACCTTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATC : 31291 74 : Tyr<-><->IleArgHisThrThrAspGlyIleAspValPheProPheProThrTyrTyr : 91 ||| !||| !.! ! ! ! ! !:!!.!!! !!:!||| !|||!:! TyrGlnLeuAspArgAlaAsnGlnLysGlnAspArgLeuLeuLeuTyrProGlyTyrPhe 31292 : TACCAGCTTGATAGGGCAAACCAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTATTTT : 31351 92 : ValTyrAspValThrArgSerProTyrTyrGluIleIleTyrPheGlyGlnIlePheMet : 111 !!:!|||:!! !! !! ! ! ! ! ! !!|||||||||:!:.!! ProPheAspIleArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeuAla 31352 : CCCTTCGATATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCA : 31411 112 : LeuValIleThrLeuLeuAlaTyrAsnGlyIleAsnIleLeuPheGlyThrIlePheLeu : 131 ! ! !.!!:!!:!!::!|||!.! !:!::!!! !!!!.!!!.!! !:!:.!.:!! AlaTyrSerAlaValIleSerTyrThrThrValAspThrPheIleAlaMetLeuIleMet 31412 : GCGTATTCCGCTGTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATAATG : 31471 132 : HisIleCysGlyGlnAlaGluAsnLeuArgSerArgIle : 144 ||||||||||||||| !|||! ||||||..!!:!:!! HisIleCysGlyGlnPheGluIleLeuArgGlnLysLeu 31472 : CACATATGCGGACAATTTGAGATACTGAGACAGAAATTA : 31512 vulgar: Lalb_14700 13 144 . KQ414804.1 31113 31512 + 119 M 61 183 G 0 6 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31114 31512 119 + . gene_id 2 ; sequence Lalb_14700 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31114 31512 . + . KQ414804.1 exonerate:protein2genome:local exon 31114 31512 . + . insertions 6 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 31114 31512 119 + . alignment_id 2 ; Query Lalb_14700 ; Align 31114 14 183 ; Align 31303 75 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14685 [mRNA] [translate_table: standard] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 316 -> 386 Target range: 34375 -> 34668 317 : IleSerLysSerAspAspValArgArgAlaValCysAspMetAspTrpTyrLysLeuAsn : 336 |||! !:!!||| !!::!!!!!!.!:!!!.!! !!!: :!!||||||!!.:!!::: IlePheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSer 34376 : ATATTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCA : 34433 337 : AsnArgAspMetGlnLeuLeuLeuLeuIleLeuLeuArgSerGlnLysGluLeuThrLeu : 356 !! !!!: :!!! !||||||!!!|||:!!! !|||!!! ::: !||| !||| ProProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeu 34434 : CCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTG : 34493 357 : SerAlaGlyLysPheValValLeuSerValGluAlaPheAlaThr >>>> Target I : 372 !!!|||||||||||| !..!!!!|||:!!||| !|||::!||| 83 ThrAlaGlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34494 : ACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt............. : 34543 373 : ntron 1 >>>> MetLeuLysAlaSerAlaSerTyrIleSerIleLeuLeuAlaMet : 386 bp :::||||||.!!:!! !.!!|||:!!|||:!!||||||.!!:!: ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeuThrVal 34544 : ............agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTCACAGTT : 34668 vulgar: Lalb_14685 316 386 . KQ414804.1 34375 34668 + 110 M 55 165 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34376 34668 110 + . gene_id 1 ; sequence Lalb_14685 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34376 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34376 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34668 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34668 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34376 34668 110 + . alignment_id 1 ; Query Lalb_14685 ; Align 34376 317 165 ; Align 34624 372 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14677 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 224 Query range: 16 -> 114 Target range: 445561 -> 445961 17 : GlnLeuLeuLeuAlaMetSerGluLeuSerLysProGlyAsnLeuValIleThrLeuM : 36 |||:!!:!! !|||!!: ! !:!!!:! ! ! ! !.!.:!!:!!:!!!:!:!!| GlnIleValLysAlaIleValThrMetAsnAspGlnLeuGluIleLeuLeuSerIleM 445562 : CAGATAGTAAAAGCAATAGTGACAATGAATGATCAATTGGAGATACTGTTAAGTATCA : 445619 37 : etIleValLeuValHisValIleIleMetLeuLeuAsnAsnTyrSerGlyGlnLysLe : 55 |||||||| ! !|||:!!:!:.!!:!!!!!!!!|||||||||:!!|||||| !|| etIleValSerAsnHisIleValPheLeuPhePheAsnAsnTyrAlaGlyGlnLeuLe 445620 : TGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGGACAGTTACT : 445676 56 : uMetThrIleSerValGluValPheHisAsn{Th} >>>> Target Intron 1 : 66 |!!:!.! !|||! !||||||||| !.!.{:!} 106 bp uIleAsnHisSerGluGluValPheValGlu{Se}++ 445677 : GATAAACCATAGCGAAGAAGTCTTCGTTGAA{TC}gt..................... : 445713 67 : >>>> {r}TyrAsnSerLeuTrpTyrCysLeuProProLysSerGlnLysIleLeuL : 83 {!}||||||||| !|||||||||:!!||| !!..:!!||||||:!:|||| ++{r}TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuL 445714 : ....ag{A}TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTAT : 445866 84 : euPheIleLeuMetLysThrAlaThrGluValGlnPheAsnLeuAlaGlyLeuPheVa : 102 ||||||||:!!||||||!:!.!!! ! ! !:!!.!!||||||:!!|||:!!|||!. euPheIleMetMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAl 445867 : TGTTCATCATGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGC : 445923 103 : lProCysTyrGlnGlyPheThrThrIleArgCysLeu : 114 !|||||||||:!!||||||:!!:!!:!!! !|||||| aProCysTyrLysGlyPheSerSerValIleCysLeu 445924 : TCCGTGTTACAAAGGTTTTTCCTCGGTAATTTGTCTT : 445961 vulgar: Lalb_14677 16 114 . KQ414815.1 445561 445961 + 224 M 49 147 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445562 445961 224 + . gene_id 1 ; sequence Lalb_14677 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 445562 445710 . + . KQ414815.1 exonerate:protein2genome:local exon 445562 445710 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445711 445712 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445711 445816 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 445815 445816 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 445817 445961 . + . KQ414815.1 exonerate:protein2genome:local exon 445817 445961 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445562 445961 224 + . alignment_id 1 ; Query Lalb_14677 ; Align 445562 17 147 ; Align 445818 67 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14677 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 223 Query range: 16 -> 114 Target range: 441449 -> 441849 17 : GlnLeuLeuLeuAlaMetSerGluLeuSerLysProGlyAsnLeuValIleThrLeuM : 36 |||:!!:!! !|||!!: ! !:!!!:! ! ! ! !.!.:!!:!!:!!!:!:!!| GlnIleValLysAlaIleValThrMetAsnAspGlnLeuGluIleLeuLeuSerIleM 441450 : CAGATAGTAAAAGCAATAGTGACAATGAATGATCAATTGGAGATACTGTTAAGTATCA : 441507 37 : etIleValLeuValHisValIleIleMetLeuLeuAsnAsnTyrSerGlyGlnLysLe : 55 |||||||| ! !|||:!!:!:.!!:!!!!!!!!|||||||||:!!|||||| !|| etIleValSerAsnHisIleValPheLeuPhePheAsnAsnTyrAlaGlyGlnLeuLe 441508 : TGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGGACAGTTACT : 441564 56 : uMetThrIleSerValGluValPheHisAsn{Th} >>>> Target Intron 1 : 66 |!!:!.! !|||! !||||||||| !.!.{:!} 106 bp uIleAsnHisSerGluGluValPheValGlu{Se}++ 441565 : GATAAACCATAGCGAAGAAGTCTTCGTTGAA{TC}gt..................... : 441601 67 : >>>> {r}TyrAsnSerLeuTrpTyrCysLeuProProLysSerGlnLysIleLeuL : 83 {!}||||||||| !|||||||||:!!||| !!..:!!||||||:!:|||| ++{r}TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuL 441602 : ....ag{A}TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTAT : 441754 84 : euPheIleLeuMetLysThrAlaThrGluValGlnPheAsnLeuAlaGlyLeuPheVa : 102 ||||||||:!!||||||!:!.!!! ! ! !:!!.!.||||||:!!|||:!!|||!. euPheIleMetMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAl 441755 : TGTTCATCATGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGC : 441811 103 : lProCysTyrGlnGlyPheThrThrIleArgCysLeu : 114 !|||||||||:!!||||||:!!:!!:!!! !|||||| aProCysTyrLysGlyPheSerSerValIleCysLeu 441812 : TCCGTGTTACAAAGGTTTTTCCTCGGTAATTTGTCTT : 441849 vulgar: Lalb_14677 16 114 . KQ414815.1 441449 441849 + 223 M 49 147 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441450 441849 223 + . gene_id 2 ; sequence Lalb_14677 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 441450 441598 . + . KQ414815.1 exonerate:protein2genome:local exon 441450 441598 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 441599 441600 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 441599 441704 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 441703 441704 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 441705 441849 . + . KQ414815.1 exonerate:protein2genome:local exon 441705 441849 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441450 441849 223 + . alignment_id 2 ; Query Lalb_14677 ; Align 441450 17 147 ; Align 441706 67 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14677 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 213 Query range: 293 -> 385 Target range: 445573 -> 445955 294 : AlaValMetGlnLeuAspGluLeuAspAsnValLeuIleSerPheGlnPheValLeuV : 313 |||:!!:!! !:!!:!!!!:! ! .!.:!!|||:!!|||.!!..!.!!||| ! AlaIleValThrMetAsnAspGlnLeuGluIleLeuLeuSerIleMetIleValSerA 445574 : GCAATAGTGACAATGAATGATCAATTGGAGATACTGTTAAGTATCATGATCGTCAGTA : 445631 314 : alHisValIleIleMetPheSerAsnAsnTyrSerGlyGlnLysLeuMetSerThrSe : 332 !|||:!!:!:.!!:!!|||! !|||||||||:!!|||||| !|||!!:!:! !|| snHisIleValPheLeuPhePheAsnAsnTyrAlaGlyGlnLeuLeuIleAsnHisSe 445632 : ATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGGACAGTTACTGATAAACCATAG : 445688 333 : rGlyGlnValPheHisGly{Th} >>>> Target Intron 1 >>>> {r}Tyr : 340 |! !:!!|||||| !! !{:!} 106 bp {!}||| rGluGluValPheValGlu{Se}++ ++{r}Tyr 445689 : CGAAGAAGTCTTCGTTGAA{TC}gt.........................ag{A}TAC : 445818 341 : AsnSerMetTrpTyrArgIleProProLysSerGlnLysLeuLeuLeuPheIleLeuM : 360 ||||||! |||||| !!:!!||| !!..:!!|||||||||||||||||||||:!!| AsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleMetM 445819 : AATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCATGA : 445878 361 : etLysSerAlaProGluValGlnPheAsnLeuSerGlyLeuPheValProCysTyrGl : 379 ||||||||.!! ! ! !:!!.!!||||||||||||:!!|||!.!|||||||||:! etLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTyrLy 445879 : TGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTACAA : 445935 380 : nGlyPheThrAlaValIle : 385 !||||||:!!:!!|||||| sGlyPheSerSerValIle 445936 : AGGTTTTTCCTCGGTAATT : 445955 vulgar: Lalb_14677 293 385 . KQ414815.1 445573 445955 + 213 M 45 135 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445574 445955 213 + . gene_id 3 ; sequence Lalb_14677 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 445574 445710 . + . KQ414815.1 exonerate:protein2genome:local exon 445574 445710 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445711 445712 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445711 445816 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 445815 445816 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 445817 445955 . + . KQ414815.1 exonerate:protein2genome:local exon 445817 445955 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445574 445955 213 + . alignment_id 3 ; Query Lalb_14677 ; Align 445574 294 135 ; Align 445818 340 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14677 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 212 Query range: 293 -> 385 Target range: 441461 -> 441843 294 : AlaValMetGlnLeuAspGluLeuAspAsnValLeuIleSerPheGlnPheValLeuV : 313 |||:!!:!! !:!!:!!!!:! ! .!.:!!|||:!!|||.!!..!.!!||| ! AlaIleValThrMetAsnAspGlnLeuGluIleLeuLeuSerIleMetIleValSerA 441462 : GCAATAGTGACAATGAATGATCAATTGGAGATACTGTTAAGTATCATGATCGTCAGTA : 441519 314 : alHisValIleIleMetPheSerAsnAsnTyrSerGlyGlnLysLeuMetSerThrSe : 332 !|||:!!:!:.!!:!!|||! !|||||||||:!!|||||| !|||!!:!:! !|| snHisIleValPheLeuPhePheAsnAsnTyrAlaGlyGlnLeuLeuIleAsnHisSe 441520 : ATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGGACAGTTACTGATAAACCATAG : 441576 333 : rGlyGlnValPheHisGly{Th} >>>> Target Intron 1 >>>> {r}Tyr : 340 |! !:!!|||||| !! !{:!} 106 bp {!}||| rGluGluValPheValGlu{Se}++ ++{r}Tyr 441577 : CGAAGAAGTCTTCGTTGAA{TC}gt.........................ag{A}TAC : 441706 341 : AsnSerMetTrpTyrArgIleProProLysSerGlnLysLeuLeuLeuPheIleLeuM : 360 ||||||! |||||| !!:!!||| !!..:!!|||||||||||||||||||||:!!| AsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleMetM 441707 : AATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCATGA : 441766 361 : etLysSerAlaProGluValGlnPheAsnLeuSerGlyLeuPheValProCysTyrGl : 379 ||||||||.!! ! ! !:!!.!.||||||||||||:!!|||!.!|||||||||:! etLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTyrLy 441767 : TGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTACAA : 441823 380 : nGlyPheThrAlaValIle : 385 !||||||:!!:!!|||||| sGlyPheSerSerValIle 441824 : AGGTTTTTCCTCGGTAATT : 441843 vulgar: Lalb_14677 293 385 . KQ414815.1 441461 441843 + 212 M 45 135 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441462 441843 212 + . gene_id 4 ; sequence Lalb_14677 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 441462 441598 . + . KQ414815.1 exonerate:protein2genome:local exon 441462 441598 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 441599 441600 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 441599 441704 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 441703 441704 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 441705 441843 . + . KQ414815.1 exonerate:protein2genome:local exon 441705 441843 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441462 441843 212 + . alignment_id 4 ; Query Lalb_14677 ; Align 441462 294 135 ; Align 441706 340 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14678 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 184 Query range: 151 -> 249 Target range: 445555 -> 445955 152 : ValGlnSerPheTyrLeuAlaValLeuGluLeuGluLysValAspAsnPheIleValS : 171 |||..!..!.!. !|||:!!:!! !:!!.!. ! ! .!..!.:!::!!| ValSerGlnIleValLysAlaIleValThrMetAsnAspGlnLeuGluIleLeuLeuS 445556 : GTTTCACAGATAGTAAAAGCAATAGTGACAATGAATGATCAATTGGAGATACTGTTAA : 445613 172 : erLeuGlnIlePheLeuValHisValLeuIleMetPheLeuAsnAsnTyrSerGlyGl : 190 ||:!!..!||| !! ! !|||:!!:!!.!!:!!|||!!!|||||||||:!!||||| erIleMetIleValSerAsnHisIleValPheLeuPhePheAsnAsnTyrAlaGlyGl 445614 : GTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGGACA : 445670 191 : nArgLeuIleSerThrSerValGluValPheHisLys{Th} >>>> Target Int : 203 | !||||||!:! !|||! !||||||||| !:!!{:!} 106 b nLeuLeuIleAsnHisSerGluGluValPheValGlu{Se}++ 445671 : GTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA{TC}gt............... : 445713 204 : ron 1 >>>> {r}TyrAsnSerProTrpTyrArgValSerProLysSerGlnLysM : 218 p {!}||||||||| !!|||||| !!||| !! !!..:!!||||||: ++{r}TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysL 445714 : ..........ag{A}TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGT : 445860 219 : etLeuLeuPheValLeuMetLysSerIleThrGluValGlnPheAsnMetAlaGlyLe : 237 !!|||||||||:!!:!!|||||||||! ! ! ! !:!!.!!|||:!::!!|||:! euLeuLeuPheIleMetMetLysSerThrIleProCysLysIleAsnLeuSerGlyIl 445861 : TGTTATTGTTCATCATGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTAT : 445917 238 : uPheThrProSerPheGluGlyPheThrMetValIle : 249 !|||.!!|||!!!!:!:!!||||||:!! !|||||| ePheAlaProCysTyrLysGlyPheSerSerValIle 445918 : ATTTGCTCCGTGTTACAAAGGTTTTTCCTCGGTAATT : 445955 vulgar: Lalb_14678 151 249 . KQ414815.1 445555 445955 + 184 M 51 153 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445556 445955 184 + . gene_id 1 ; sequence Lalb_14678 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 445556 445710 . + . KQ414815.1 exonerate:protein2genome:local exon 445556 445710 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445711 445712 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445711 445816 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 445815 445816 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 445817 445955 . + . KQ414815.1 exonerate:protein2genome:local exon 445817 445955 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445556 445955 184 + . alignment_id 1 ; Query Lalb_14678 ; Align 445556 152 153 ; Align 445818 204 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14678 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 151 -> 249 Target range: 441443 -> 441843 152 : ValGlnSerPheTyrLeuAlaValLeuGluLeuGluLysValAspAsnPheIleValS : 171 |||..!..!.!. !|||:!!:!! !:!!.!. ! ! .!..!.:!::!!| ValSerGlnIleValLysAlaIleValThrMetAsnAspGlnLeuGluIleLeuLeuS 441444 : GTTTCACAGATAGTAAAAGCAATAGTGACAATGAATGATCAATTGGAGATACTGTTAA : 441501 172 : erLeuGlnIlePheLeuValHisValLeuIleMetPheLeuAsnAsnTyrSerGlyGl : 190 ||:!!..!||| !! ! !|||:!!:!!.!!:!!|||!!!|||||||||:!!||||| erIleMetIleValSerAsnHisIleValPheLeuPhePheAsnAsnTyrAlaGlyGl 441502 : GTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGGACA : 441558 191 : nArgLeuIleSerThrSerValGluValPheHisLys{Th} >>>> Target Int : 203 | !||||||!:! !|||! !||||||||| !:!!{:!} 106 b nLeuLeuIleAsnHisSerGluGluValPheValGlu{Se}++ 441559 : GTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA{TC}gt............... : 441601 204 : ron 1 >>>> {r}TyrAsnSerProTrpTyrArgValSerProLysSerGlnLysM : 218 p {!}||||||||| !!|||||| !!||| !! !!..:!!||||||: ++{r}TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysL 441602 : ..........ag{A}TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGT : 441748 219 : etLeuLeuPheValLeuMetLysSerIleThrGluValGlnPheAsnMetAlaGlyLe : 237 !!|||||||||:!!:!!|||||||||! ! ! ! !:!!.!.|||:!::!!|||:! euLeuLeuPheIleMetMetLysSerThrIleProCysLysMetAsnLeuSerGlyIl 441749 : TGTTATTGTTCATCATGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTAT : 441805 238 : uPheThrProSerPheGluGlyPheThrMetValIle : 249 !|||.!!|||!!!!:!:!!||||||:!! !|||||| ePheAlaProCysTyrLysGlyPheSerSerValIle 441806 : ATTTGCTCCGTGTTACAAAGGTTTTTCCTCGGTAATT : 441843 vulgar: Lalb_14678 151 249 . KQ414815.1 441443 441843 + 183 M 51 153 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441444 441843 183 + . gene_id 2 ; sequence Lalb_14678 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 441444 441598 . + . KQ414815.1 exonerate:protein2genome:local exon 441444 441598 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 441599 441600 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 441599 441704 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 441703 441704 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 441705 441843 . + . KQ414815.1 exonerate:protein2genome:local exon 441705 441843 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441444 441843 183 + . alignment_id 2 ; Query Lalb_14678 ; Align 441444 152 153 ; Align 441706 204 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14698 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 214 Query range: 152 -> 250 Target range: 445555 -> 445955 153 : LeuGluSerLeuTyrLeuAlaPheLeuMetLeuGluAspValGluAsnPheLeuIleS : 172 :!!..!..!:!! !|||.!.:!!! :!!.!.||| ! !.!..!.|||:!!| ValSerGlnIleValLysAlaIleValThrMetAsnAspGlnLeuGluIleLeuLeuS 445556 : GTTTCACAGATAGTAAAAGCAATAGTGACAATGAATGATCAATTGGAGATACTGTTAA : 445613 173 : erLeuGlnIlePheMetIleHisValLeuIleMetPheValAsnAsnTyrSerGlyGl : 191 ||:!!..!||| !!! ! !|||:!!:!!.!!:!!||| !!|||||||||:!!||||| erIleMetIleValSerAsnHisIleValPheLeuPhePheAsnAsnTyrAlaGlyGl 445614 : GTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGGACA : 445670 192 : nLysLeuMetAsnSerSerIleGluIlePheThrLys{Th} >>>> Target Int : 204 | !|||!!:||| !||| !|||:!!|||..!:!!{:!} 106 b nLeuLeuIleAsnHisSerGluGluValPheValGlu{Se}++ 445671 : GTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA{TC}gt............... : 445713 205 : ron 1 >>>> {r}TyrAsnSerLeuTrpTyrSerIleProProGlnSerGlnLysL : 219 p {!}||||||||| !||||||!!!:!!||| !...:!!||||||| ++{r}TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysL 445714 : ..........ag{A}TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGT : 445860 220 : euMetLeuPheValLeuMetLysSerIleThrAlaValGlnPheAsnLeuAlaGlyLe : 238 ||:!:||||||:!!:!!|||||||||! ! ! !! !:!!.!!||||||:!!|||:! euLeuLeuPheIleMetMetLysSerThrIleProCysLysIleAsnLeuSerGlyIl 445861 : TGTTATTGTTCATCATGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTAT : 445917 239 : uPheAsnProCysPheGluGlyPheAsnMetValIle : 250 !||| !||||||!:!:!!||||||::! !|||||| ePheAlaProCysTyrLysGlyPheSerSerValIle 445918 : ATTTGCTCCGTGTTACAAAGGTTTTTCCTCGGTAATT : 445955 vulgar: Lalb_14698 152 250 . KQ414815.1 445555 445955 + 214 M 51 153 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445556 445955 214 + . gene_id 1 ; sequence Lalb_14698 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 445556 445710 . + . KQ414815.1 exonerate:protein2genome:local exon 445556 445710 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445711 445712 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445711 445816 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 445815 445816 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 445817 445955 . + . KQ414815.1 exonerate:protein2genome:local exon 445817 445955 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445556 445955 214 + . alignment_id 1 ; Query Lalb_14698 ; Align 445556 153 153 ; Align 445818 205 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14698 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 213 Query range: 152 -> 250 Target range: 441443 -> 441843 153 : LeuGluSerLeuTyrLeuAlaPheLeuMetLeuGluAspValGluAsnPheLeuIleS : 172 :!!..!..!:!! !|||.!.:!!! :!!.!.||| ! !.!..!.|||:!!| ValSerGlnIleValLysAlaIleValThrMetAsnAspGlnLeuGluIleLeuLeuS 441444 : GTTTCACAGATAGTAAAAGCAATAGTGACAATGAATGATCAATTGGAGATACTGTTAA : 441501 173 : erLeuGlnIlePheMetIleHisValLeuIleMetPheValAsnAsnTyrSerGlyGl : 191 ||:!!..!||| !!! ! !|||:!!:!!.!!:!!||| !!|||||||||:!!||||| erIleMetIleValSerAsnHisIleValPheLeuPhePheAsnAsnTyrAlaGlyGl 441502 : GTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACAACTACGCAGGACA : 441558 192 : nLysLeuMetAsnSerSerIleGluIlePheThrLys{Th} >>>> Target Int : 204 | !|||!!:||| !||| !|||:!!|||..!:!!{:!} 106 b nLeuLeuIleAsnHisSerGluGluValPheValGlu{Se}++ 441559 : GTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA{TC}gt............... : 441601 205 : ron 1 >>>> {r}TyrAsnSerLeuTrpTyrSerIleProProGlnSerGlnLysL : 219 p {!}||||||||| !||||||!!!:!!||| !...:!!||||||| ++{r}TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysL 441602 : ..........ag{A}TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGT : 441748 220 : euMetLeuPheValLeuMetLysSerIleThrAlaValGlnPheAsnLeuAlaGlyLe : 238 ||:!:||||||:!!:!!|||||||||! ! ! !! !:!!.!.||||||:!!|||:! euLeuLeuPheIleMetMetLysSerThrIleProCysLysMetAsnLeuSerGlyIl 441749 : TGTTATTGTTCATCATGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTAT : 441805 239 : uPheAsnProCysPheGluGlyPheAsnMetValIle : 250 !||| !||||||!:!:!!||||||::! !|||||| ePheAlaProCysTyrLysGlyPheSerSerValIle 441806 : ATTTGCTCCGTGTTACAAAGGTTTTTCCTCGGTAATT : 441843 vulgar: Lalb_14698 152 250 . KQ414815.1 441443 441843 + 213 M 51 153 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441444 441843 213 + . gene_id 2 ; sequence Lalb_14698 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 441444 441598 . + . KQ414815.1 exonerate:protein2genome:local exon 441444 441598 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 441599 441600 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 441599 441704 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 441703 441704 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 441705 441843 . + . KQ414815.1 exonerate:protein2genome:local exon 441705 441843 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441444 441843 213 + . alignment_id 2 ; Query Lalb_14698 ; Align 441444 153 153 ; Align 441706 205 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14707 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 196 Query range: 101 -> 208 Target range: 445525 -> 445952 102 : TyrPheGlnAsnSerLysIleLeuPheArgIleSerGlnPhePheIleSerIleThrG : 121 ||| !!. ||| ... ..!:!!||||||.!. ! ! !:!!|||..! TyrProThrLysArgLys***PheHisHisValSerGlnIleValLysAlaIleValT 445526 : TATCCAACTAAAcgtaaataatttcatcaTGTTTCACAGATAGTAAAAGCAATAGTGA : 445583 122 : luPheSerAspLysAspAlaValLeuLeuSerIleHisPheValValThrTyrThrTh : 140 !.!.!:!|||:!! ! !:!!|||||||||||| .!!||| !!.!:!!! !.. hrMetAsnAspGlnLeuGluIleLeuLeuSerIleMetIleValSerAsnHisIleVa 445584 : CAATGAATGATCAATTGGAGATACTGTTAAGTATCATGATCGTCAGTAATCACATAGT : 445640 141 : rPheIleCysGlyAsnAsnTyrSerGlyGlnIleLeuLeuAspThrSerAlaAlaLeu : 159 !|||:!:! ! !|||||||||:!!||||||:!!|||:!!:!! !|||! !! !:!! lPheLeuPhePheAsnAsnTyrAlaGlyGlnLeuLeuIleAsnHisSerGluGluVal 445641 : GTTCCTGTTCTTTAACAACTACGCAGGACAGTTACTGATAAACCATAGCGAAGAAGTC : 445697 160 : PheHisAsp{Th} >>>> Target Intron 1 >>>> {r}TyrAsnSerLeuT : 168 ||| !!!:{:!} 106 bp {!}||||||||| !| PheValGlu{Se}++ ++{r}TyrAsnSerThrT 445698 : TTCGTTGAA{TC}gt.........................ag{A}TACAATTCTACTT : 445830 169 : rpTyrArgIleProProArgMetGlnLysMetValLeuPheThrMetMetLysThrGl : 187 ||||| !!:!!||| !!!! !||||||:!!:!!||||||! !|||||||||!:! rpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleMetMetLysSerTh 445831 : GGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCATGATGAAAAGTAC : 445887 188 : nAlaAlaValGluLeuAsnCysAlaGlyLeuPheThrProCysTyrGluGlyPheAla : 206 ! ! !! !:!!:!!||| !:!!|||:!!|||.!!|||||||||:!!||||||:!! rIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTyrLysGlyPheSer 445888 : GATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTACAAAGGTTTTTCC : 445944 207 : ThrVal : 208 :!!||| SerVal 445945 : TCGGTA : 445952 vulgar: Lalb_14707 101 208 . KQ414815.1 445525 445952 + 196 M 61 183 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445526 445952 196 + . gene_id 1 ; sequence Lalb_14707 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 445526 445710 . + . KQ414815.1 exonerate:protein2genome:local exon 445526 445710 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445711 445712 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445711 445816 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 445815 445816 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 445817 445952 . + . KQ414815.1 exonerate:protein2genome:local exon 445817 445952 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445526 445952 196 + . alignment_id 1 ; Query Lalb_14707 ; Align 445526 102 183 ; Align 445818 164 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14707 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 195 Query range: 101 -> 208 Target range: 441413 -> 441840 102 : TyrPheGlnAsnSerLysIleLeuPheArgIleSerGlnPhePheIleSerIleThrG : 121 ||| !!. ||| ... ..!:!!||||||.!. ! ! !:!!|||..! TyrProThrLysArgLys***PheHisHisValSerGlnIleValLysAlaIleValT 441414 : TATCCAACTAAAcgtaaataatttcatcaTGTTTCACAGATAGTAAAAGCAATAGTGA : 441471 122 : luPheSerAspLysAspAlaValLeuLeuSerIleHisPheValValThrTyrThrTh : 140 !.!.!:!|||:!! ! !:!!|||||||||||| .!!||| !!.!:!!! !.. hrMetAsnAspGlnLeuGluIleLeuLeuSerIleMetIleValSerAsnHisIleVa 441472 : CAATGAATGATCAATTGGAGATACTGTTAAGTATCATGATCGTCAGTAATCACATAGT : 441528 141 : rPheIleCysGlyAsnAsnTyrSerGlyGlnIleLeuLeuAspThrSerAlaAlaLeu : 159 !|||:!:! ! !|||||||||:!!||||||:!!|||:!!:!! !|||! !! !:!! lPheLeuPhePheAsnAsnTyrAlaGlyGlnLeuLeuIleAsnHisSerGluGluVal 441529 : GTTCCTGTTCTTTAACAACTACGCAGGACAGTTACTGATAAACCATAGCGAAGAAGTC : 441585 160 : PheHisAsp{Th} >>>> Target Intron 1 >>>> {r}TyrAsnSerLeuT : 168 ||| !!!:{:!} 106 bp {!}||||||||| !| PheValGlu{Se}++ ++{r}TyrAsnSerThrT 441586 : TTCGTTGAA{TC}gt.........................ag{A}TACAATTCTACTT : 441718 169 : rpTyrArgIleProProArgMetGlnLysMetValLeuPheThrMetMetLysThrGl : 187 ||||| !!:!!||| !!!! !||||||:!!:!!||||||! !|||||||||!:! rpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleMetMetLysSerTh 441719 : GGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCATGATGAAAAGTAC : 441775 188 : nAlaAlaValGluLeuAsnCysAlaGlyLeuPheThrProCysTyrGluGlyPheAla : 206 ! ! !! !:!!:!!||| !:!!|||:!!|||.!!|||||||||:!!||||||:!! rIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTyrLysGlyPheSer 441776 : GATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTACAAAGGTTTTTCC : 441832 207 : ThrVal : 208 :!!||| SerVal 441833 : TCGGTA : 441840 vulgar: Lalb_14707 101 208 . KQ414815.1 441413 441840 + 195 M 61 183 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441414 441840 195 + . gene_id 2 ; sequence Lalb_14707 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 441414 441598 . + . KQ414815.1 exonerate:protein2genome:local exon 441414 441598 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 441599 441600 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 441599 441704 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 441703 441704 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 441705 441840 . + . KQ414815.1 exonerate:protein2genome:local exon 441705 441840 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441414 441840 195 + . alignment_id 2 ; Query Lalb_14707 ; Align 441414 102 183 ; Align 441706 164 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14689 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 677 Query range: 0 -> 323 Target range: 16192 -> 19635 1 : LeuTyrTyrMetIleAsnAlaValThrIlePheAsnSerLeuPheLysLeuIleAlaIle : 20 |||||| ! !||| !:!!:!!:!! ! !!!!!.!!|||:!!:!!!.!:!: LeuTyrThrAlaCysAsnIleLeuSerLeuThrIleProPheLeuLysIleLeuValLeu 16193 : TTATATACTGCATGCAACATTTTATCGTTAACAATACCGTTTCTCAAGATACTCGTCTTG : 16250 21 : HisProTyrLysArgLysPhePheAsnLeuIleLeuHisLeuGlnHisGluPheIleAsp : 40 ! ! !!:::|||... ||||||:::||||||||||||||||||!..||||||:!: !! LeuAlaHisLysAsnAspPhePheHisLeuIleLeuHisLeuGlnArgGluPheLeuHis 16251 : CTTGCAcacaaaaatgatttttttcatttgattcTGCACCTACAACGAGAATTCTTGCAT : 16310 41 : SerGluTyrThrGluHisGluArgArgMetLeuLeuValCysGlnArgThrAlaLysIle : 60 :!!!!:||| !!!::!!|||!:!!:!!!:||||||! !||||||||| !..!! .!! AlaAspTyrAspAspTyrGluLysLysIleLeuLeuGlyCysGlnArgGlnCysThrPhe 16311 : GCAGATTACGACGACTACGAGAAAAAGATTTTGCTCGGTTGCCAACGTCAATGTACCTTC : 16370 61 : PheIleTrpSerPheThrIleLeuValHisValThrValLeuGlyTyrSerAlaIlePro : 80 |||:!!!! ! !||||||:!!!!!..! ! ! !||||||:!!..!|||! !!.!! !||| PheValCysPhePheThrLeuPheThrLysGlyThrValIleSerTyrIleValAsnPro 16371 : TTCGTTTGTTTCTTCACACTTTTCACTAAAGGAACTGTTATCTCGTACATCGTTAATCCG : 16430 81 : PhePhe{G} >>>> Target Intron 1 >>>> {ly}Arg<-><->SerAsnGlu : 87 .!!.!!{!} 1386 bp {.!}... ...|||||| LeuIle{A}++ ++{la}AsnIleGlyLysAsnGlu 16431 : CTTATT{G}gt.........................ag{ca}aatattggaaaaaatgag : 17843 88 : SerAspArgValLeuIleGlyAsnMetTrpMetSerVal<->IleAlaPheSerProTyr : 106 |||!!:|||:!!||| ! !|||||||||:!:!:!:!! :!!:!!.!.!!!|||||| SerGluArgIleLeuProPheAsnMetTrpValAsnLeuProLeuSerMetThrProTyr 17844 : TCAGAGAGGATACTTCCATTTAATATGTGGGTCAACTTGCCATTATCAATGACGCCATAT : 17903 107 : TyrGluIleValTyrIleIleGln >>>> Target Intron 2 >>>> IlePheC : 117 |||||||||...::: :::||| 110 bp ::!.!.! TyrGluIleThrPheSerLeuGln++ ++ValLeuS 17904 : TACgaaataactttttcattaCAGgt.........................aggtTCTGT : 18046 118 : ysValIleLysIleGlyValValTyrHisSerTyrAspAsnPheGlnCysLeuMetAsnL : 137 !:!! ! ! ||||||||| !||| !! :::||||||||| |||::!||||||| erLeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIleMetAsnL 18047 : CTCTGTACCATATTGGCGTGAGTTATTTCTgcttcgacaattttttatgcatCATGAACT : 18106 138 : euHisValAlaThrGlnPheArgIleLeuHisHisArgLeuGluSerLeuGluSerThrT : 157 |||||!.!|||||||||||||||:!!|||!!.:!!|||:!!! !!:!:!! ..! ! euHisAlaAlaThrGlnPheArgValLeuGlnTyrArgMetAlaAsnMetThrAspLeuL 18107 : TGCACGCGGCTACTCAGTTTCGAGTATTGCAATACCGAATGGCGAATATGACCGATTTAA : 18166 158 : yrCysSerGlyArgArgLeuValGlnMetSerSerAsnSerLeuSerAsnAspSerAspT : 177 ! ... |||::: ...|||..!!!!!:! ! !||| :!! !! ysAspLysGluArgLysGluArgAsnMetLysThrSerValSerSer------AlaCysP 18167 : AGGacaaagagaggaaagagagaaatatgaAGACAAGTGTGAGTTCG------GCGTGCT : 18220 178 : yrGlyAlaAspCysTyrAlaMetPheLysThrTyrIleGlnGlnHisLysAlaLeuLeuA : 197 :!!.!.!!!!:|||||| !:!:.!!||| !||||||::!||||||:!! !|||:!!| heAlaThrGluCysTyrAsnValLeuLysAspTyrIleArgGlnHisGlnAsnLeuIleA 18221 : TTGCAACAGAATGTTACAACGTTCTCAAAGATTATATCAGACAGCATCAGAACCTGATTG : 18280 198 : laTyrCysLysLysLeuAsnGluValPheAsnIleTyrAlaLeuGlyGlnValIleLeuP : 217 ||||||||!!.||||||.!.:!!|||||||||||| !!.!|||||||||:!!:!!:!!| laTyrCysAsnLysLeuGluLysValPheAsnIleIleValLeuGlyGlnLeuLeuMetP 18281 : CTTATTGCAACAAACTCGAGAAAGTGTTCAATATCATTGTTCTGGGGCAATTGTTAATGT : 18340 218 : heThrLeuIleLeuCysLeuAspAlaTyrGlnLeuLeuMet >>>> Target Intro : 231 ||!:!:!!:!::!!|||||||||!.!!:!|||:!!|||||| 975 bp heSerMetLeuIleCysLeuAspGlyPheGlnIleLeuMet++ 18341 : TCAGCATGTTGATCTGTCTCGATGGATTTCAGATACTTATGgt................. : 18384 232 : n 3 >>>> ValAsnAlaLeuProSerArgLysMetThrPheAlaPheHisMetLeuGl : 247 !.!|||.!!! ! !!!!!! !::!:!!! !||| !||||||!!: !!. ++AlaAsnThrProThrArgThrArgLeuIlePheIlePheHisIleGlyAl 18385 : ........agGCAAATACACCTACCAGAACCCGACTGATTTTCATCTTTCACATAGGAGC : 19405 248 : yCysPheAlaGlnLeuLeuMetPheThrTyrSerCysAspLeuLeuIleAlaGluSerLe : 267 !|||.!...!||||||||||||||||||||||||||||||! !:!!||| !|||||| aCysMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSerTh 19406 : ATGCATGTGTCAATTGCTGATGTTTACCTACAGCTGCGACTGCATCATAAGAGAAAGCAC : 19465 268 : uLysValAlaGluTrpAlaTyrGlyIleProTrpThrTyrPheProMetAsnLysHisGl : 287 !!....!|||||| !!.!|||.!! !||||||||| !!!.||||||!:! ! !!|| rSerThrAlaGluAlaValTyrSerGlyProTrpThrLeuLeuProMetSerAlaAspGl 19466 : GAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGACACTTTTACCAATGAGCGCAGACGG : 19525 288 : yLysMetMetArgAsnAspLeuIlePheLeuLeuValArgSerSerGluProCysCysIl : 307 |||||||!!:|||!!.||||||!!:.!!:!!:!!:!!|||||||||! !|||||||||:! yLysMetIleArgLysAspLeuMetLeuValIleMetArgSerSerValProCysCysLe 19526 : AAAAATGATAAGGAAAGATTTGATGCTCGTTATCATGAGATCGAGCGTACCTTGTTGCTT : 19585 308 : eThrAlaPheLysPhePheProValSerLeuGluThrTyrThrThrVal : 323 :|||||| !|||||| !||||||||||||||||||||| !||| uThrAlaArgGlyPhePheValValSerLeuGluThrTyrThrGlyVal 19586 : GACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAACGTACACAGGGGTA : 19635 vulgar: Lalb_14689 0 323 . KQ414828.1 16192 19635 + 677 M 82 246 S 0 1 5 0 2 I 0 1382 3 0 2 S 1 2 M 1 3 G 0 6 M 16 48 G 0 3 M 14 42 5 0 2 I 0 106 3 0 2 M 58 174 G 2 0 M 56 168 5 0 2 I 0 971 3 0 2 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 16193 19635 677 + . gene_id 1 ; sequence Lalb_14689 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 16193 16439 . + . KQ414828.1 exonerate:protein2genome:local exon 16193 16439 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 16440 16441 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 16440 17825 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 17824 17825 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 17826 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17826 17929 . + . insertions 9 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18381 . + . insertions 0 ; deletions 2 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19635 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19635 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 16193 19635 677 + . alignment_id 1 ; Query Lalb_14689 ; Align 16193 1 246 ; Align 17828 84 3 ; Align 17837 85 48 ; Align 17888 101 42 ; Align 18040 115 174 ; Align 18214 175 168 ; Align 19357 231 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14689 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 431 Query range: 84 -> 323 Target range: 32404 -> 33822 85 : SerAsnGluSerAspArgValLeuIleGlyAsnMetTrpMetSerVal<->IleAlaPhe : 103 !.!|||||||||||||||! !! !||| !:!!||||||:!:..!:!! :!!:!! ! LysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuProLeuSerVal 32405 : AAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCATTATCCGTA : 32462 104 : SerProTyrTyrGluIleValTyrIleIleGln >>>> Target Intron 1 >>>> : 115 !!!|||||||||||||||...|||||||||||| 307 bp ThrProTyrTyrGluIleThrTyrIleIleGln++ 32463 : ACAccatattatgaaattacttACATAATACAGgt......................... : 32500 116 : IlePheCysValIleLysIleGlyValValTyrHisSerTyrAspAsnPheGlnCysL : 134 !!!.! !||| !:!!:!!|||||| !|||! !!!!!::||||||... : ++AlaLeuSerValTyrGlnValGlyValCysTyrLeuCysPheAspAsnIlePhePheI 32501 : agGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCTttgataacatttttttca : 32862 135 : euMetAsnLeuHisValAlaThrGlnPheArgIleLeuHisHisArgLeuGluSerLeuG : 154 ::||| !|||||||||||| !|||||||||||||||!!.:!!|||:!!! !:!:!! leMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnVal- 32863 : ttatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTG- : 32922 155 : luSerThrTyrCysSerGlyArgArgLeuValGlnMetSerSerAsnSerLeuSerAsnA : 174 ||||||! !!!! !:!! !! !|||!:!:!!!:! !|||!..! --------------SerGlyLeuSerGluIleValLysSerAsnAspAsnThrSerThrA 32923 : --------------TCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACAAGCACGG : 32967 175 : spSerAspTyrGlyAlaAspCysTyrAlaMetPheLysThrTyrIleGlnGlnHisLysA : 194 !..! |||..!! ! ! |||||| !! !||||||!.!! !||||||||||||:!!| laGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnA 32968 : CTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGG : 33027 195 : laLeuLeuAlaTyrCysLysLysLeuAsnGluValPheAsnIleTyrAlaLeuGlyGlnV : 214 |||||::: :::|||::: |||.!.|||||||||!..:!! !!.!|||||||||| laLeuIleGluPheCysGluIleLeuGluGluValPheThrValIleValLeuGlyGlnV 33028 : CACTaattgaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAG : 33087 215 : alIleLeuPheThrLeuIleLeuCysLeuAspAlaTyrGlnLeuLeuMet >>>> Tar : 231 ||:!!:!!|||!:!:!!|||:!!|||!!!! !!.!|||:!!:!!|||:!! alLeuMetPheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeu++ 33088 : TACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGgt........ : 33140 232 : get Intron 2 >>>> ValAsnAlaLeuProSerArgLysMetThrPheAlaPheHi : 244 406 bp :!!!.. !! ! !..! !::::!:.!!|||.!!! ! ++IleThrLeuProPheGluSerArgValAlaPheThrCysPh 33141 : .................agATAACGTTACCATTTGAATCGCGCGTTGCTTTCACGTGCTT : 33583 245 : sMetLeuGlyCysPheAlaGlnLeuLeuMetPheThrTyrSerCysAspLeuLeuIleAl : 264 !:!!:!! ! !! ! ::!||||||! !||||||||||||||||||:!!! !:!!! !.! eLeuIleThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAsnCysIleThrTh 33584 : CTTGATTACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCAATTGCATAACAAC : 33643 265 : aGluSerLeuLysValAlaGluTrpAlaTyrGlyIleProTrpThrTyrPheProMetAs : 284 !|||||||||!!.:!!||||||! !.!|||!.! !||||||! ! !!!!.||||||:: rGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAs 33644 : AGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATgga : 33703 285 : nLysHisGlyLysMetMetArgAsnAspLeuIlePheLeuLeuValArgSerSerGluPr : 304 :||| ||||||::::!:|||!!.|||||| ! ! |||:!!:!!|||:!!!!!..!|| pLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgPr 33704 : taaatttggaaaactgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGAGACGACC : 33763 305 : oCysCysIleThrAlaPheLysPhePheProValSerLeuGluThrTyrThrThrVal : 323 |! !..!:!:||||||! ! !|||||| !!:!!!!!|||||||||!:!|||! !||| oSerAlaLeuThrAlaCysGlyPhePheSerIleThrLeuGluThrPheThrLysVal 33764 : TTCCGCTTTGACTGCCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTACTAAGGta : 33822 vulgar: Lalb_14689 84 323 . KQ414828.1 32404 33822 + 431 M 16 48 G 0 3 M 14 42 5 0 2 I 0 303 3 0 2 M 39 117 G 5 0 M 72 216 5 0 2 I 0 402 3 0 2 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32405 33822 431 + . gene_id 2 ; sequence Lalb_14689 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32405 32497 . + . KQ414828.1 exonerate:protein2genome:local exon 32405 32497 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32498 32499 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32498 32804 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32803 32804 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32805 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32805 33137 . + . insertions 0 ; deletions 5 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33822 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33822 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32405 33822 431 + . alignment_id 2 ; Query Lalb_14689 ; Align 32405 85 48 ; Align 32456 101 42 ; Align 32805 115 117 ; Align 32922 159 216 ; Align 33544 231 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14689 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 422 Query range: 179 -> 323 Target range: 3564 -> 4450 180 : AspCysTyrAlaMetPheLysThrTyrIleGlnGlnHisLysAlaLeuLeuAlaTyrCysLy : 200 !!:|||||||||! !||||||!.!! !||||||||||||:!!||||||:!!! !||||||!! GluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAs 3565 : GAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAA : 3625 201 : sLysLeuAsnGluValPheAsnIleTyrAlaLeuGlyGlnValIleLeuPheThrLeuIleL : 221 .||||||.!.|||||||||..!|||!:!!.!|||!.!||||||:!:||||||!:!|||:!!: nLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeuLeuM 3626 : CAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAA : 3688 222 : euCysLeuAspAlaTyrGlnLeuLeuMet >>>> Target Intron 1 >>>> ValA : 232 !!|||||||||!.!||| |||:!!||| 457 bp ! !: etCysLeuAspGlyTyr---LeuValMet++ ++GluA 3689 : TGTGCCTCGATGGATAT---TTGGTGATGgt.........................agGAAG : 4175 233 : snAlaLeuProSerArgLysMetThrPheAlaPheHisMetLeuGlyCysPheAlaGlnLeu : 252 !!.!!! ! !! !!:!::::!:|||||| !||||||:!: !||||||.!...!|||||| spThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeu 4176 : ATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTG : 4235 253 : LeuMetPheThrTyrSerCysAspLeuLeuIleAlaGluSerLeuLysValAlaGluTrpAl : 273 ||||||||||||||||||||||||! !|||||| !|||||||||!!.||||||.!. LeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIl 4236 : TTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTAT : 4298 274 : aTyrGlyIleProTrpThrTyrPheProMetAsnLysHisGlyLysMetMetArgAsnAspL : 294 !|||! ! ! !!|||! !:!!!!.||||||:!!!:! !|||::!|||:!!|||!!.|||| eTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAspL 4299 : ATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATT : 4361 295 : euIlePheLeuLeuValArgSerSerGluProCysCysIleThrAlaPheLysPhePhePro : 314 ||! !|||:!!:!!! !||||||!!!! !|||||||||:!!||||||! ! !||||||||| euThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePhePro 4362 : TGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCT : 4421 315 : ValSerLeuGluThrTyrThrThrVal : 323 |||||||||||||||||||||:!!||| ValSerLeuGluThrTyrThrSerVal 4422 : GTGTCACTGGAAACGTACACTTCGGTA : 4450 vulgar: Lalb_14689 179 323 . KQ414828.1 3564 4450 + 422 M 47 141 G 1 0 M 3 9 5 0 2 I 0 453 3 0 2 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 3565 4450 422 + . gene_id 3 ; sequence Lalb_14689 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 3565 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3565 3714 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4171 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 4170 4171 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 4172 4450 . + . KQ414828.1 exonerate:protein2genome:local exon 4172 4450 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 3565 4450 422 + . alignment_id 3 ; Query Lalb_14689 ; Align 3565 180 141 ; Align 3706 228 9 ; Align 4172 231 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14689 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 370 Query range: 84 -> 323 Target range: 22325 -> 23829 85 : SerAsnGluSerAspArgValLeuIleGlyAsnMetTrpMetSerVal<->IleAlaPhe : 103 !.!|||||||||||||||! !! !||| !:!!||||||:!:..!:!! :!!:!! ! LysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuProLeuSerVal 22326 : AAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCATTATCCGTA : 22383 104 : SerProTyrTyrGluIleValTyrIleIleGlnIlePheCysValIleLys{I} >>>> : 121 !!!|||||||||||||||...||||||||||||:!!!!. :!!.!!..!{|} ThrProTyrTyrGluIleThrTyrIleIleGlnValLeuProIlePheSer{I}+- 22384 : ACAccatattatgaaattacttACATAATACAGGTATTACCAATTTTCTCA{A}gg.... : 22440 122 : Target Intron 1 >>>> {le}GlyValValTyrHisSerTyrAspAsnPheGln : 132 307 bp {||}.!!!.! !|||! !!!!:::||| ... ++{le}SerAlaCysTyrLeuCysPheAspIleIlePhe 22441 : .....................ag{TT}AGCGCGTGTTACCTTTGCtttgatatcattttt : 22777 133 : CysLeuMetAsnLeuHisValAlaThrGlnPheArgIleLeuHisHisArgLeuGluSer : 152 :::::: |||||||||||| !|||||||||||||||!!.:!!|||:!!! !:! PheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsn 22778 : ttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAAT : 22837 153 : LeuGluSerThrTyrCysSerGlyArgArgLeuValGlnMetSerSerAsnSerLeuSer : 172 :!! ||||||! !!!! !:!! !! ||||||.!.!:!! !||| Val---------------SerGlyLeuSerGluIleValLysSerSerGluAsnProSer 22838 : GTG---------------TCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGC : 22882 173 : AsnAspSerAspTyrGlyAlaAspCysTyrAlaMetPheLysThrTyrIleGlnGlnHis : 192 !..|||..! |||..!! ! ! |||||| !! !||||||!.!! !|||||||||||| ThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHis 22883 : ACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCAT : 22942 193 : LysAlaLeuLeuAlaTyrCysLysLysLeuAsnGluValPheAsnIleTyrAlaLeuGly : 212 :!!||||||:!!! !!:!||| !! !|||.!.|||||||||!..:!! !!.!|||||| GlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleValLeuGly 22943 : CAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGA : 23002 213 : GlnValIleLeuPheThrLeuIleLeuCysLeuAspAlaTyrGlnLeuLeuMetValAsn : 232 ||||||:!!:!!! !!:!:!!:!!:!!|||!!! !!.!||||||:!!|||:!!|||!:! GlnValLeuMetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeuValSer 23003 : CAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGGTGAGT : 23062 233 : AlaLeuProSer{A} >>>> Target Intron 2 >>>> {rg}LysMetThrPhe : 241 ! ! !! !{!} 492 bp { !}::::!:.!!||| IleGluSerTyr{T}-+ +-{hr}ArgValAlaPhe 23063 : ATCGAAAGCTAT{A}at.........................at{CG}CGCGTTGCTTTC : 23581 242 : AlaPheHisMetLeuGlyCysPheAlaGlnLeuLeuMetPheThrTyrSerCysAspLeu : 261 |||! ! !:!!:!! ! !!.!.::!||||||! !|||||||||||||||||||||! ! AlaCysPheLeuMetMetGlyMetSerGlnLeuTrpMetPheThrTyrSerCysAspCys 23582 : GCGTGCTTCTTGATGATGGGCATGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGC : 23641 262 : LeuIleAlaGluSerLeuLysValAlaGluTrpAlaTyrGlyIleProTrpThrTyrPhe : 281 :!!! !.!!|||||||||!!.:!!||||||! !.!|||!.! !||||||! ! !!!!. IleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeu 23642 : ATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTA : 23701 282 : ProMetAsnLysHisGlyLysMetMetArgAsnAspLeuIlePheLeuLeuValArgSer : 301 ||||||:!!||| !||||||:!!:!:|||!!.!!:||| !.!.|||:!!:!!|||:!! ProMetAspLysPheGlyLysLeuLeuArgLysGluLeuGlnMetLeuIleLeuArgAla 23702 : CCAATGGACAAATTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGGGCG : 23761 302 : SerGluProCysCysIleThrAlaPheLysPhePheProValSerLeuGluThrTyrThr : 321 !!!..!|||! !..!:!:||||||! ! !|||||| !!:!!||||||||||||!:!||| ArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThr 23762 : AGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACT : 23821 322 : ThrVal : 323 ! !||| LysVal 23822 : AAGGTA : 23829 vulgar: Lalb_14689 84 323 . KQ414828.1 22325 23829 + 370 M 16 48 G 0 3 M 20 60 S 0 1 5 0 2 I 0 303 3 0 2 S 1 2 M 32 96 G 5 0 M 78 234 S 0 1 5 0 2 I 0 488 3 0 2 S 1 2 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22326 23829 370 + . gene_id 4 ; sequence Lalb_14689 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22326 22437 . + . KQ414828.1 exonerate:protein2genome:local exon 22326 22437 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22438 22439 . + . intron_id 1 ; splice_site "GG" KQ414828.1 exonerate:protein2genome:local intron 22438 22744 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22743 22744 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22745 23077 . + . KQ414828.1 exonerate:protein2genome:local exon 22745 23077 . + . insertions 0 ; deletions 5 KQ414828.1 exonerate:protein2genome:local splice5 23078 23079 . + . intron_id 2 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 23078 23569 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 23568 23569 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local cds 23570 23829 . + . KQ414828.1 exonerate:protein2genome:local exon 23570 23829 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22326 23829 370 + . alignment_id 4 ; Query Lalb_14689 ; Align 22326 85 48 ; Align 22377 101 60 ; Align 22747 122 96 ; Align 22843 159 234 ; Align 23572 238 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14689 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 318 Query range: 181 -> 323 Target range: 11017 -> 12748 182 : TyrAlaMetPheLysThrTyrIleGlnGlnHisLysAlaLeuLeuAlaTyrCysLysLys : 201 |||! !! ||||||!:!|||:!!!:!||||||:!!.!!|||:!!! !|||! !:!!||| TyrGluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLys 11018 : TACGAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAG : 11075 202 : LeuAsnGluValPheAsnIleTyrAlaLeuGlyGlnValIleLeuPheThrLeuIleLeu : 221 |||.!..!.|||!:!!..! ! ! !||||||||||||:!!||||||!:!:!!:!!:!! LeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIle 11076 : CTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATT : 11135 222 : CysLeuAspAlaTyrGlnLeuLeuMetValAsn<->AlaLeuProSer{Ar} >>>> T : 237 |||||| !!.!||||||:!!|||:!!|||!:! :!!|||||| !!{! } CysLeuPheGlyTyrGlnIleLeuLeuValSerIleSerLeuProPro{Th}-- 11136 : TGCCTCTTTGGTTATCAGATATTATTGGTTAGTATTTCACTTCCTCCA{AC}tg...... : 11190 238 : arget Intron 1 >>>> {g}LysMetThrPheAlaPheHisMetLeuGlyCysPhe : 249 1302 bp {!}:::! ! !||| !|||! !!!:! !|||..!.!. ++{r}ArgSerIlePheMetPheLeuIleCysGlyAlaMet 11191 : ...................ag{G}CGCAGTATTTTCATGTTCCTCATATGTGGCGCCATG : 12524 250 : AlaGlnLeuLeuMetPheThrTyrSerCysAspLeuLeuIleAlaGluSerLeuLysVal : 269 !.! !|||!!!||||||||||||||||||:!!:!!:!!|||! !:!!||| !!!.:!! ValLeuLeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIle 12525 : GTTTTATTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATT : 12584 270 : AlaGluTrpAlaTyrGlyIleProTrpThrTyrPheProMetAsnLysHisGlyLysMet : 289 ||| !||||||..! !! !|||||| !.!.|||||||||||| !||||||! ! AlaPheAlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLys 12585 : GCTTTTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAG : 12644 290 : MetArgAsnAspLeuIlePheLeuLeuValArgSerSerGluProCysCysIleThrAla : 309 :!:|||:!!|||||||||.!.:!!:!!! !||||||!!!..! !||||||:!:|||||| LeuArgHisAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAla 12645 : CTACGGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCG : 12704 310 : PheLysPhePheProValSerLeuGluThrTyrThrThrVal : 323 ! !|||||||||||||||||||||||||||||||||||| AsnGlyPhePheProValSerLeuGluThrTyrThrThrVal 12705 : AATGGATTTTTCCCTGTGTCCTTAGAAACTTATACTACGGTG : 12748 vulgar: Lalb_14689 181 323 . KQ414828.1 11017 12748 + 318 M 51 153 G 0 3 M 4 12 S 0 2 5 0 2 I 0 1298 3 0 2 S 1 1 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 11018 12748 318 + . gene_id 5 ; sequence Lalb_14689 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 11018 11187 . + . KQ414828.1 exonerate:protein2genome:local exon 11018 11187 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 11188 11189 . + . intron_id 1 ; splice_site "TG" KQ414828.1 exonerate:protein2genome:local intron 11188 12489 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12488 12489 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 12490 12748 . + . KQ414828.1 exonerate:protein2genome:local exon 12490 12748 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 11018 12748 318 + . alignment_id 5 ; Query Lalb_14689 ; Align 11018 182 153 ; Align 11174 233 12 ; Align 12491 238 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14689 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 256 Query range: 84 -> 238 Target range: 37468 -> 38225 85 : SerAsnGluSerAspArgValLeuIleGlyAsnMetTrpMetSerVal<->IleAlaPhe : 103 !.!|||||||||||||||! !! !||| !:!!||||||:!:..!:!! :!!:!!.!. LysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuProLeuSerIle 37469 : AAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCATTATCCATA : 37526 104 : SerProTyrTyrGluIleValTyrIleIleGln >>>> Target Intron 1 >>>> : 115 !!!|||||||||||||||...|||||||||||| 307 bp ThrProTyrTyrGluIleThrTyrIleIleGln++ 37527 : ACAccatattatgaaattacttACATAATACAGgt......................... : 37564 116 : IlePheCysValIleLysIleGlyValValTyrHisSerTyrAspAsnPheGlnCysL : 134 !!!.! !||| !:!!:!!.!!!.! !|||! !!!!:::||| ... : ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIlePhePheI 37565 : agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatttttttca : 37926 135 : euMetAsnLeuHisValAlaThrGlnPheArgIleLeuHisHisArgLeuGluSerLeuG : 154 ::::: |||||||||||| !|||||||||||||||!!.:!!|||:!!! !:!:!! leLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnVal- 37927 : ttttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTG- : 37986 155 : luSerThrTyrCysSerGlyArgArgLeuValGlnMetSerSerAsnSerLeuSerAsnA : 174 ||||||! !!!! !:!! !! ||||||.!.!:!! !|||!..| --------------SerGlyLeuSerGluIleValLysSerSerGluAsnProSerThrA 37987 : --------------TCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAG : 38031 175 : spSerAspTyrGlyAlaAspCysTyrAlaMetPheLysThrTyrIleGlnGlnHisLysA : 194 ||..! |||..!! ! ! |||||| !! !||||||!.!! !||||||||||||:!!| spGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnA 38032 : ATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGG : 38091 195 : laLeuLeuAlaTyrCysLysLysLeuAsnGluValPheAsnIleTyrAlaLeuGlyGlnV : 214 |||||:!!! !!:!||| !! !|||.!.|||||||||!..:!! !||||||||||||| laLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnV 38092 : CACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAG : 38151 215 : alIleLeuPheThrLeuIleLeuCysLeuAspAlaTyrGlnLeuLeuMetValAsnAlaL : 234 ||:!!:!!|||!:!:!!:!!:!!|||!!!! !!.!|||||| !|||:!!|||!:! !: alLeuMetPheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeuValSerIleV 38152 : TCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGGTGAGTATCG : 38211 235 : euProSerArgLys : 238 !!! !! !!.!||| alArgTyrAsnLys 38212 : TTCGCTATAATAAA : 38225 vulgar: Lalb_14689 84 238 . KQ414828.1 37468 38225 + 256 M 16 48 G 0 3 M 14 42 5 0 2 I 0 303 3 0 2 M 39 117 G 5 0 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37469 38225 256 + . gene_id 6 ; sequence Lalb_14689 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37469 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37469 37561 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 38225 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 38225 . + . insertions 0 ; deletions 5 KQ414828.1 exonerate:protein2genome:local similarity 37469 38225 256 + . alignment_id 6 ; Query Lalb_14689 ; Align 37469 85 48 ; Align 37520 101 42 ; Align 37869 115 117 ; Align 37986 159 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14689 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 200 Query range: 249 -> 323 Target range: 28562 -> 28784 250 : AlaGlnLeuLeuMetPheThrTyrSerCysAspLeuLeuIleAlaGluSerLeuLysVal : 269 ::!||||||! !|||||||||||||||||||||! !:!!! !.!!|||||||||!!.:!! SerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIle 28563 : AGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATC : 28620 270 : AlaGluTrpAlaTyrGlyIleProTrpThrTyrPheProMetAsnLysHisGlyLysMet : 289 ||||||! !.!|||!.! !||||||! ! !!!!.||||||:::||| ||||||::: AlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeu 28621 : GCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaactg : 28680 290 : MetArgAsnAspLeuIlePheLeuLeuValArgSerSerGluProCysCysIleThrAla : 309 :!:|||!!.|||||| ! ! |||:!!:!!|||:!!!!!..!|||! !! !:!:|||||| LeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThrAla 28681 : CTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCC : 28740 310 : PheLysPhePheProValSerLeuGluThrTyrThrThrVal : 323 ! ! !|||||| !!:!!||||||||||||!:!|||! !||| CysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 28741 : TGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 28784 vulgar: Lalb_14689 249 323 . KQ414828.1 28562 28784 + 200 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28563 28784 200 + . gene_id 7 ; sequence Lalb_14689 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28563 28784 . + . KQ414828.1 exonerate:protein2genome:local exon 28563 28784 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28563 28784 200 + . alignment_id 7 ; Query Lalb_14689 ; Align 28563 250 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14689 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 200 Query range: 249 -> 323 Target range: 38538 -> 38760 250 : AlaGlnLeuLeuMetPheThrTyrSerCysAspLeuLeuIleAlaGluSerLeuLysVal : 269 ::!||||||! !|||||||||||||||||||||! !:!!! !.!!|||||||||!!.:!! SerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIle 38539 : AGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATC : 38596 270 : AlaGluTrpAlaTyrGlyIleProTrpThrTyrPheProMetAsnLysHisGlyLysMet : 289 ||||||! !.!|||!.! !||||||! ! !!!!.||||||:::||| ||||||::: AlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeu 38597 : GCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaactg : 38656 290 : MetArgAsnAspLeuIlePheLeuLeuValArgSerSerGluProCysCysIleThrAla : 309 :!:|||!!.|||||| ! ! |||:!!:!!|||:!!!!!..!|||! !! !:!:|||||| LeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThrAla 38657 : CTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCC : 38716 310 : PheLysPhePheProValSerLeuGluThrTyrThrThrVal : 323 ! ! !|||||| !!:!!||||||||||||!:!|||! !||| CysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 38717 : TGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 38760 vulgar: Lalb_14689 249 323 . KQ414828.1 38538 38760 + 200 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38539 38760 200 + . gene_id 8 ; sequence Lalb_14689 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38539 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38539 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38539 38760 200 + . alignment_id 8 ; Query Lalb_14689 ; Align 38539 250 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14689 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 84 -> 153 Target range: 2891 -> 3507 85 : SerAsnGluSerAspArgValLeuIleGlyAsnMetTrpMetSerVal<->IleAlaPheSe : 104 ...|||||||||||||||:!!||||||! !|||.!.|||!!:..!:!! |||.!!.!!!! LysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuProIleThrIleTh 2892 : aaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCCGATAACCATCAC : 2952 105 : rProTyrTyrGluIleValTyrIleIleGln >>>> Target Intron 1 >>>> Il : 115 !|||||||||||||||:::::: |||||| 406 bp || rProTyrTyrGluIleLeuPheThrIleGln++ ++Il 2953 : ACCATactatgaaatattatttacgaTACAGgt.........................agAT : 3391 116 : ePheCysValIleLysIleGlyValValTyrHisSerTyrAspAsnPheGlnCysLeuMetA : 136 |||| !:!!!!: ! :!! !!:!! !|||! !!!! !|||||||||! !|||:!!!!:| ePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheLeuCysMetIleA 3392 : TTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTCTGTGCATGATCA : 3454 137 : snLeuHisValAlaThrGlnPheArgIleLeuHisHisArgLeuGluSerLeu : 153 ||||||||..!|||||||||||||||||||||!!.:!!||||||..!!:!:!! snLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnVal 3455 : ATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAATGTG : 3507 vulgar: Lalb_14689 84 153 . KQ414828.1 2891 3507 + 183 M 16 48 G 0 3 M 14 42 5 0 2 I 0 402 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2892 3507 183 + . gene_id 9 ; sequence Lalb_14689 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2892 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2892 2984 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3507 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3507 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2892 3507 183 + . alignment_id 9 ; Query Lalb_14689 ; Align 2892 85 48 ; Align 2943 101 42 ; Align 3391 115 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14680 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 760 Query range: 0 -> 323 Target range: 2312 -> 6471 1 : LeuLeuTyrAlaLeuAlaThrMetLeuCysThrThrAsnAspLeuPheLysValCysValLe : 21 :!!:!!||| !:!!..!!.!!!:||| ! !! ..!|||||||||:!!! !:!!! ValValTyrIleMetCysAsnIleLeuThrLeuGlyIleSerLeuPheLysIlePheLeuSe 2313 : GTTGTATACATAATGTGCAACATTCTAACACTGGGCATAAGTTTGTTCAAGATCTTTCTCTC : 2373 22 : uValAlaTyrLysLysAspPheLeuAspLeuLeuValHisLeuArgGlnHisPheLeuGluS : 42 !:!! ! !|||||| ! ...|||:::|||::: ||| !:!!|||! !.!.| rMetTrpSerLysLysLysLeuLeuGluLeuIleLysPheAlaArgThrAsnPheTrpHisS 2374 : GATGTGGAGTAAGAAAAAACttttggaattaattaaattcgccAGAACGAATTTCTGGCATT : 2436 43 : erGluTyrAspThrAsnGluLysThrIleLeuAspAlaCysLysArgThrCysAlaIlePhe : 62 ||!!:||||||:!!.!.|||:!!! !|||:!!:!!! !|||||||||||||||.!!.!!.!! erAspTyrAspSerGlnGluGlnIleIleValAsnGluCysLysArgThrCysThrPheLeu 2437 : CGGATTATGACTCGCAGGAGCAAATTATTGTGAACGAGTGTAAACGCACTTGTACATTCCTT : 2496 63 : ValGlySerPheThrLeuPheThrAsnValThrLeuIleGlyTyrIleLeuValProLeuPh : 83 :!! !! !|||!.!!!!|||.!!|||! !|||:!! !|||||||||:!! !|||:!! ! IleCysValPheAsnPhePheAlaAsnGlyThrValSerGlyTyrIleIleArgProIleVa 2497 : ATATGCGTGTTTAATTTCTTCGCTAATGGGACAGTGTCTGGATACATAATCAGGCCAATTGT : 2559 84 : e{L} >>>> Target Intron 1 >>>> {eu}SerIleGlyLysHisGlySerAspA : 93 { } 318 bp { !}||||||||||||::: ||||||| l{A}++ ++{la}SerIleGlyLysAsnGluSerAspA 2560 : A{G}gt.........................ag{CA}AgtattggaaaaaatgaatccGACA : 2907 94 : rgPhePheProPheAlaLeu<->ProGluSerProLeuTyrIleSerProTyrTyrGluIle : 112 ||!!..!! ! !! !!!! !!!: !|||:!! !|||!!!||||||||||||||| rgLeuLeuIleValAsnPheTrpIleAspLeuProIleThrIleThrProTyrTyrGluIle 2908 : GGTTACTTATAGTCAACTTCTGGATTGACCTGCCGATAACCATCACACCATactatgaaata : 2967 113 : AlaPhePheValGln >>>> Target Intron 2 >>>> AlaLeuIleIleTyrAla : 123 ||| :!!||| 406 bp !!!!|||||| ! LeuPheThrIleGln++ ++IlePheIleIleMetTyr 2968 : ttatttacgaTACAGgt.........................agATTTTTATCATAATGTAC : 3406 124 : IleAspLeuCysHisHisSerValAspAsnIleLeuCysIleMetAsnPheHisValAlaTh : 144 :!! !:!! !!:!!! !!!!:!!||||||.!!||||||!!:!!:|||.!.|||..!||||| ValCysIleSerTyrLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaTh 3407 : GTTTGCATAAGCTACCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTAC : 3469 145 : rGlnPheArgIleLeuGlnTyrArgLeuSerAsnLeuLysSerGluAsnVal<->CysAspG : 164 ||||||||||||||||||||||||||||||||||:!! .!!! !|||! ! ||| rGlnPheArgIleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAspL 3470 : TCAATTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcgata : 3532 165 : lyProLeuLysArgValProSerAlaAlaGluAsnSerTyrAlaThrPheLysArgCysVal : 184 |||:::...|||||| !:!!!!:.!.!!!||||||! !||||||!.!|||:!! ysIleSerLysLysThrProSerAsnSerAspGluCysTyrAlaLysPheLysAsnCysIle 3533 : aaatttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCATT : 3592 185 : GlnGlnHisLysMetLeuIleAlaTyrCysAsnLysLeuGluGluValPheGlyLeuValGl : 205 |||||||||:!! ||||||! !|||||||||||||||:!!||||||||||||:!! !!! GlnGlnHisGlnAlaLeuIleGluTyrCysAsnLysLeuGlnGluValPheGlyIlePheVa 3593 : CAACAGCATCAAGCACTCATAGAATACTGTAACAAACTTCAAGAGGTGTTCGGTATATTTGT : 3655 206 : yPheSerGlnIleIleIlePheSerMetLeuIleCysLeuAsnGlyArgTyrThrAlaLeu : 226 !.!!:!!|||:!::!::!!||||||:!!|||!!:||||||:!!||| ||| !!.!:!! lLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAspGly---TyrLeuValMet+ 3656 : GCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGGA---TATTTGGTGATGg : 3715 227 : >>>> Target Intron 3 >>>> PhePheLeuMetThrSerThrMetGlnLeuLeuM : 237 493 bp ||| !|||! ! !!!! ! |||||||||| + -+PheHisLeuThrGlyCysLeuCysGlnLeuLeuM 3716 : t.........................tgTTTCACCTAACGGGATGCCTGTGCCAACTGTTGA : 4241 238 : etPheThrTyrSerCysAspGlyValIleGlnGluSerLeuLysValAlaProAlaValTyr : 257 |||||||||||||||||||| !!:!!|||!:!|||||||||!!.|||||| !|||:!!||| etPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIleTyr 4242 : TGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATATAC : 4301 258 : SerSerProTrpAlaTyrLeuProMetThrIleSerGlyLysMetLeuArgLysAspLeuVa : 278 ..!!!! !!||| !:!!||||||||| !! !||||||::!||||||||||||||||||.. AspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAspLeuTh 4302 : GACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGAC : 4364 279 : lLeuValIleLeuArgSerArgIleProCysCysLeuThrAlaLysGlyPhePheProIleS : 299 !!!!|||||| !|||||||||:!!|||||||||||||||||| ||||||||||||:!:| rPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePheProValS 4365 : ATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGT : 4427 300 : erLeuGluThrTyrThrLys >>>> Target Intron 4 >>>> ValTrpThrThrA : 310 |||||||||||||||||..! 1970 bp ||| !:!|||| erLeuGluThrTyrThrSer++ ++ValIleSerThrA 4428 : CACTGGAAACGTACACTTCGgt.........................agGTTATAAGTACAG : 6430 311 : laMetSerTyrPheThrLeuLeuArgGlnThrMetAspAsp : 323 ||:!!|||||||||||||||||||||||| !!!:!!:||| laValSerTyrPheThrLeuLeuArgGlnArgIleGluAsp 6431 : CAGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAGGAC : 6471 vulgar: Lalb_14680 0 323 . KQ414828.1 2312 6471 + 760 M 83 249 S 0 1 5 0 2 I 0 314 3 0 2 S 1 2 M 15 45 G 0 3 M 18 54 5 0 2 I 0 402 3 0 2 M 44 132 G 0 3 M 59 177 G 1 0 M 4 12 5 0 2 I 0 489 3 0 2 M 80 240 5 0 2 I 0 1966 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2313 6471 760 + . gene_id 1 ; sequence Lalb_14680 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2313 2562 . + . KQ414828.1 exonerate:protein2genome:local exon 2313 2562 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2563 2564 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 2563 2880 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 2879 2880 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 2881 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2881 2984 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 2 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3714 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3714 . + . insertions 3 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 3715 3716 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3715 4207 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 4206 4207 . + . intron_id 2 ; splice_site "TG" KQ414828.1 exonerate:protein2genome:local cds 4208 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4208 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 4 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 4 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 3 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6471 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6471 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2313 6471 760 + . alignment_id 1 ; Query Lalb_14680 ; Align 2313 1 249 ; Align 2883 85 45 ; Align 2931 100 54 ; Align 3391 118 132 ; Align 3526 162 177 ; Align 3703 222 12 ; Align 4208 226 240 ; Align 6418 306 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14680 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 483 Query range: 84 -> 323 Target range: 37459 -> 39217 85 : SerIleGlyLysHisGlySerAspArgPhePheProPheAlaLeu<->ProGluSerPro : 103 !:!:!!||||||:!!! !||||||||| ! !!:!! !:!! ! !!!: !||| AsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuPro 37460 : AATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCA : 37517 104 : LeuTyrIleSerProTyrTyrGluIleAlaPhePheValGln >>>> Target Intr : 118 |||! !|||!!!|||||||||||||||...::!.!.:!!||| 307 bp LeuSerIleThrProTyrTyrGluIleThrTyrIleIleGln++ 37518 : TTATCCATAACAccatattatgaaattacttACATAATACAGgt................ : 37564 119 : on 1 >>>> AlaLeuIleIleTyrAlaIleAspLeuCysHisHisSerValAspAsnI : 134 |||||| !:!:||| !:!!..! !|||:!!! !!!! ||| | ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleI 37565 : .........agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatca : 37917 135 : leLeuCysIleMetAsnPheHisValAlaThrGlnPheArgIleLeuGlnTyrArgLeuS : 154 ||... |||::: .!.||||||||| !||||||||||||||||||||||||:!!: lePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleA 37918 : tttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTG : 37977 155 : erAsnLeuLys<-><->SerGluAsnValCysAspGlyProLeuLysArgValProSerA : 172 !!|||:!!..! ||||||! ||| ..!.!! ! ! !!!!..! !..! laAsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProSerThrAspGluL 37978 : CCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAAT : 38037 173 : la<->AlaGluAsnSerTyrAlaThrPheLysArgCysValGlnGlnHisLysMetLeuI : 191 ! :!!|||!!.!!!||| !! !||||||!.!|||:!!|||||||||:!! |||| euTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuI 38038 : TATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAA : 38097 192 : leAlaTyrCysAsnLysLeuGluGluValPheGlyLeuValGlyPheSerGlnIleIleI : 211 ||! !!:!||| ! !||||||||||||||| !:!!:!!!.!.!!.!!|||:!!:!!! leGluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnValLeuM 38098 : TTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCTAA : 38157 212 : lePheSerMetLeuIleCysLeuAsnGlyArgTyrThrAlaLeu >>>> Target In : 226 !:||||||!!:|||||||||!!! !! ! ! ! .!! !||| 316 etPheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeu++ 38158 : TGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGgt.............. : 38204 227 : tron 2 >>>> PhePheLeuMetThrSerThrMetGlnLeuLeuMetPheThrTyrSe : 241 bp ||| !||||||.!!..!! ||||||! !|||||||||||||| -+PheAlaThrMetThrGlyValSerGlnLeuTrpMetPheThrTyrSe 38205 : ...........tgTTCGCAACGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAG : 38563 242 : rCysAspGlyValIleGlnGluSerLeuLysValAlaProAlaValTyrSerSerProTr : 261 ||||||| !!:!!! ! !|||||||||!!.:!!||| !:!!||||||:!!.!!||||| rCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTr 38564 : TTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATG : 38623 262 : pAlaTyrLeuProMetThrIleSerGlyLysMetLeuArgLysAspLeuValLeuValIl : 281 | ! !!||||||||| ||||||:::||||||||||||||| !:!!:!!|| pIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIl 38624 : GATAAATTTACCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCAT : 38683 282 : eLeuArgSerArgIleProCysCysLeuThrAlaLysGlyPhePheProIleSerLeuGl : 301 |||||||:!!||| !|||! !! !||||||||| ||||||||| !!||||||||||| eLeuArgAlaArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGl 38684 : CTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGA : 38743 302 : uThrTyrThrLys >>>> Target Intron 3 >>>> ValTrpThrThrAlaMet : 311 ||||!:!|||||| 406 bp :!! !!:!|||:!!||| uThrPheThrLys++ ++IleMetSerThrSerMet 38744 : AACCTTTACTAAGgt.........................agATCATGAGTACATCAATG : 39179 312 : SerTyrPheThrLeuLeuArgGlnThrMetAspAsp : 323 ||||||||||||||||||!:!|||!:!!!:|||||| SerTyrPheThrLeuLeuLysGlnSerIleAspAsp 39180 : TCGTATTTCACATTATTAAAACAAAGTATCGACGAC : 39217 vulgar: Lalb_14680 84 323 . KQ414828.1 37459 39217 + 483 M 15 45 G 0 3 M 18 54 5 0 2 I 0 303 3 0 2 M 40 120 G 0 6 M 15 45 G 0 3 M 53 159 5 0 2 I 0 312 3 0 2 M 80 240 5 0 2 I 0 402 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37460 39217 483 + . gene_id 2 ; sequence Lalb_14680 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37460 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37460 37561 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 38201 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 38201 . + . insertions 9 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 38202 38203 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 38202 38517 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 38516 38517 . + . intron_id 1 ; splice_site "TG" KQ414828.1 exonerate:protein2genome:local cds 38518 38757 . + . KQ414828.1 exonerate:protein2genome:local exon 38518 38757 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 38758 38759 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 38758 39163 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 39162 39163 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 39164 39217 . + . KQ414828.1 exonerate:protein2genome:local exon 39164 39217 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37460 39217 483 + . alignment_id 2 ; Query Lalb_14680 ; Align 37460 85 45 ; Align 37508 100 54 ; Align 37869 118 120 ; Align 37995 158 45 ; Align 38043 173 159 ; Align 38518 226 240 ; Align 39164 306 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14680 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 457 Query range: 81 -> 323 Target range: 32386 -> 34313 82 : LeuPheLeuSerIleGlyLysHisGlySerAspArgPhePheProPheAlaLeu<->Pro : 100 :::... !:!:!!||||||:!!! !||||||||| ! !!:!! !:!! ! ! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 32387 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 32444 101 : GluSerProLeuTyrIleSerProTyrTyrGluIleAlaPhePheValGlnAlaLeuIle : 120 !!: !||||||! !:!!!!!|||||||||||||||...::!.!.:!!|||!.!||| ! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 32445 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 32504 121 : IleTyrAlaIleAsp{L} >>>> Target Intron 1 >>>> {eu}CysHisHis : 129 |||!:!:!!! ...{:} 307 bp {!!}|||:!!! ! IlePheSerArgGln{M}-+ ++{et}CysTyrLeu 32505 : ATTTTCTCAAGGCaa{a}ct.........................ag{TG}TGTTACCTT : 32838 130 : SerValAspAsnIleLeuCysIleMetAsnPheHisValAlaThrGlnPheArgIleLeu : 149 !!! |||||||||... |||||| !.!.||||||||| !||||||||||||||| CysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeu 32839 : TGCTttgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTA : 32898 150 : GlnTyrArgLeuSerAsnLeuLys<-><->SerGluAsnVal<->CysAspGlyProLeu : 166 |||||||||:!!:!!|||:!!..! ||||||! ||| !!:!!! ! ! ! GlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerAsnAspAsnThr 32899 : CAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACA : 32958 167 : LysArgValProSerAlaAlaGluAsnSerTyrAlaThrPheLysArgCysValGlnGln : 186 !..! !!.! !! ! !:!!|||!!.!!!||| !! !||||||!.!|||:!!|||||| SerThrAlaGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGln 32959 : AGCACGGCTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAA : 33018 187 : HisLysMetLeuIleAlaTyrCysAsnLysLeuGluGluValPheGlyLeuValGlyPhe : 206 |||:!! |||||| :::|||... ||||||||||||||| !:!!:!!! !.!! HisGlnAlaLeuIleGluPheCysGluIleLeuGluGluValPheThrValIleValLeu 33019 : CATCAGGCACTaattgaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTC : 33078 207 : SerGlnIleIleIlePheSerMetLeuIleCysLeuAsnGlyArgTyrThrAlaLeu > : 226 .!!|||:!!:!!!!:||||||!!::!!||||||!!! !||| ! ! ..! !||| GlyGlnValLeuMetPheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeu++ 33079 : GGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGgt. : 33140 227 : >>> Target Intron 2 >>>> PhePheLeuMetThrSerThrMetGlnLeuLeuM : 237 442 bp ! !||||||!!:|||.!!..!! ||||||! !| -+CysPheLeuIleThrGlyValSerGlnLeuTrpM 33141 : ........................cgTGCTTCTTGATTACGGGCGTGAGTCAACTATGGA : 33613 238 : etPheThrTyrSerCysAspGlyValIleGlnGluSerLeuLysValAlaProAlaValT : 257 |||||||||||||||||:!! !!:!!! ! !|||||||||!!.:!!||| !:!!|||| etPheThrTyrSerCysAsnCysIleThrThrGluSerLeuAsnIleAlaGluSerValT 33614 : TGTTCACGTACAGTTGCAATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGT : 33673 258 : yrSerSerProTrpAlaTyrLeuProMetThrIleSerGlyLysMetLeuArgLysAspL : 277 ||:!!.!!|||||| ! !!||||||||| ||||||:::||||||||||||| yrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspL 33674 : ACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAGGATT : 33733 278 : euValLeuValIleLeuArgSerArgIleProCysCysLeuThrAlaLysGlyPhePheP : 297 || !:!!:!!|||||||||:!!||| !|||! !..!||||||||| ||||||||| euGlnValLeuIleLeuArgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheS 33734 : TACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTT : 33793 298 : roIleSerLeuGluThrTyrThrLys >>>> Target Intron 3 >>>> ValTr : 307 !!|||!!!|||||||||!:!|||||| 440 bp :!! erIleThrLeuGluThrPheThrLys++ ++IleMe 33794 : CTATAACTCTCGAAACCTTTACTAAGgt.........................agATCAT : 34263 308 : pThrThrAlaMetSerTyrPheThrLeuLeuArgGlnThrMetAspAsp : 323 !!:!|||:!!|||||||||||||||||||||!:!|||!:! !!:||| tSerThrSerMetSerTyrPheThrLeuLeuLysGlnSerAlaGluAsp 34264 : GAGTACATCAATGTCGTATTTCACCCTACTAAAACAAAGTGCCGAGGAC : 34313 vulgar: Lalb_14680 81 323 . KQ414828.1 32386 34313 + 457 M 18 54 G 0 3 M 26 78 S 0 1 5 0 2 I 0 303 3 0 2 S 1 2 M 31 93 G 0 6 M 4 12 G 0 3 M 64 192 5 0 2 I 0 438 3 0 2 M 80 240 5 0 2 I 0 436 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32387 34313 457 + . gene_id 3 ; sequence Lalb_14680 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32387 32522 . + . KQ414828.1 exonerate:protein2genome:local exon 32387 32522 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32523 32524 . + . intron_id 1 ; splice_site "ct" KQ414828.1 exonerate:protein2genome:local intron 32523 32829 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32828 32829 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32830 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32830 33137 . + . insertions 9 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33579 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 33578 33579 . + . intron_id 1 ; splice_site "CG" KQ414828.1 exonerate:protein2genome:local cds 33580 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33580 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 3 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34313 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34313 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32387 34313 457 + . alignment_id 3 ; Query Lalb_14680 ; Align 32387 82 54 ; Align 32444 100 78 ; Align 32832 127 93 ; Align 32931 158 12 ; Align 32946 162 192 ; Align 33580 226 240 ; Align 34260 306 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14680 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 443 Query range: 81 -> 323 Target range: 22307 -> 24193 82 : LeuPheLeuSerIleGlyLysHisGlySerAspArgPhePheProPheAlaLeu<->Pro : 100 :::... !:!:!!||||||:!!! !||||||||| ! !!:!! !:!! ! ! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 22308 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 22365 101 : GluSerProLeuTyrIleSerProTyrTyrGluIleAlaPhePheValGlnAlaLeuIle : 120 !!: !||||||! !:!!!!!|||||||||||||||...::!.!.:!!|||!.!||| ! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 22366 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 22425 121 : IleTyrAla{I} >>>> Target Intron 1 >>>> {le}AspLeuCysHisHis : 129 |||!:!:!!{|} 307 bp {||}..! !|||:!!! ! IlePheSer{I}+- ++{le}SerAlaCysTyrLeu 22426 : ATTTTCTCA{A}gg.........................ag{TT}AGCGCGTGTTACCTT : 22759 130 : SerValAspAsnIleLeuCysIleMetAsnPheHisValAlaThrGlnPheArgIleLeu : 149 !!! ||| |||... |||::: .!.||||||||| !||||||||||||||| CysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeu 22760 : TGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTA : 22819 150 : GlnTyrArgLeuSerAsnLeuLys<-><->SerGluAsnValCysAspGlyProLeuLys : 167 |||||||||:!!:!!|||:!!..! ||||||! ||| ..!.!! ! ! ! GlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluAsnPro 22820 : CAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCA : 22879 168 : ArgValProSerAla<->AlaGluAsnSerTyrAlaThrPheLysArgCysValGlnGln : 186 !!!..! !..! ! :!!|||!!.!!!||| !! !||||||!.!|||:!!|||||| SerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGln 22880 : AGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAG : 22939 187 : HisLysMetLeuIleAlaTyrCysAsnLysLeuGluGluValPheGlyLeuValGlyPhe : 206 |||:!! ||||||! !!:!||| ! !||||||||||||||| !:!!:!!! !.!! HisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleValLeu 22940 : CATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTC : 22999 207 : SerGlnIleIleIlePheSerMetLeuIleCysLeuAsnGlyArgTyrThrAlaLeu > : 226 .!!|||:!!:!!!!:! !|||!!:|||||||||!!!! !||| ! ! ..! !||| GlyGlnValLeuMetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeu++ 23000 : GGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTGgt. : 23061 227 : >>> Target Intron 2 >>>> PhePheLeuMetThrSerThrMetGlnLeuLeuM : 237 528 bp ! !|||||||||! !.!!! !! ||||||! !| -+CysPheLeuMetMetGlyMetSerGlnLeuTrpM 23062 : ........................cgTGCTTCTTGATGATGGGCATGAGTCAACTATGGA : 23620 238 : etPheThrTyrSerCysAspGlyValIleGlnGluSerLeuLysValAlaProAlaValT : 257 |||||||||||||||||||| !!:!!! ! !|||||||||!!.:!!||| !:!!|||| etPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValT 23621 : TGTTCACGTATAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGT : 23680 258 : yrSerSerProTrpAlaTyrLeuProMetThrIleSerGlyLysMetLeuArgLysAspL : 277 ||:!!.!!|||||| ! !!||||||||| !! !! !||||||:!!|||||||||!!:| yrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysGluL 23681 : ACGCTGGACCATGGATAAATTTACCAATGGACAAATTTGGAAAACTGCTAAGAAAAGAAT : 23740 278 : euValLeuValIleLeuArgSerArgIleProCysCysLeuThrAlaLysGlyPhePheP : 297 || !:!!:!!|||||||||:!!||| !|||! !..!||||||||| ||||||||| euGlnMetLeuIleLeuArgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheS 23741 : TGCAAATGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTT : 23800 298 : roIleSerLeuGluThrTyrThrLys >>>> Target Intron 3 >>>> ValTr : 307 !!|||||||||||||||!:!|||||| 313 bp :!! erIleSerLeuGluThrPheThrLys++ ++IleMe 23801 : CTATATCTCTCGAAACCTTTACTAAGgt.........................agATCAT : 24143 308 : pThrThrAlaMetSerTyrPheThrLeuLeuArgGlnThrMetAspAsp : 323 !!:!|||:!!|||||||||||||||||||||!:!||| !!!:!!:||| tSerThrSerMetSerTyrPheThrLeuLeuLysGlnCysIleGluAsp 24144 : GAGTACATCAATGTCGTATTTCACATTATTAAAACAATGTATCGAGGAC : 24193 vulgar: Lalb_14680 81 323 . KQ414828.1 22307 24193 + 443 M 18 54 G 0 3 M 24 72 S 0 1 5 0 2 I 0 303 3 0 2 S 1 2 M 33 99 G 0 6 M 15 45 G 0 3 M 53 159 5 0 2 I 0 524 3 0 2 M 80 240 5 0 2 I 0 309 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22308 24193 443 + . gene_id 4 ; sequence Lalb_14680 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22308 22437 . + . KQ414828.1 exonerate:protein2genome:local exon 22308 22437 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22438 22439 . + . intron_id 1 ; splice_site "GG" KQ414828.1 exonerate:protein2genome:local intron 22438 22744 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22743 22744 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22745 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22745 23058 . + . insertions 9 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23059 23060 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23059 23586 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 23585 23586 . + . intron_id 1 ; splice_site "CG" KQ414828.1 exonerate:protein2genome:local cds 23587 23826 . + . KQ414828.1 exonerate:protein2genome:local exon 23587 23826 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23827 23828 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23827 24139 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 24138 24139 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 24140 24193 . + . KQ414828.1 exonerate:protein2genome:local exon 24140 24193 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22308 24193 443 + . alignment_id 4 ; Query Lalb_14680 ; Align 22308 82 54 ; Align 22365 100 72 ; Align 22747 125 99 ; Align 22852 158 45 ; Align 22900 173 159 ; Align 23587 226 240 ; Align 24140 306 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14680 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 400 Query range: 172 -> 323 Target range: 18222 -> 19909 173 : AlaGluAsnSerTyrAlaThrPheLysArgCysValGlnGlnHisLysMetLeuIleAla : 192 ||| !.!.!!!||| !..!.!!||| !! !:!!::!||||||:!!! ||||||||| AlaThrGluCysTyrAsnValLeuLysAspTyrIleArgGlnHisGlnAsnLeuIleAla 18223 : GCAACAGAATGTTACAACGTTCTCAAAGATTATATCAGACAGCATCAGAACCTGATTGCT : 18280 193 : TyrCysAsnLysLeuGluGluValPheGlyLeuValGlyPheSerGlnIleIleIlePhe : 212 ||||||||||||||||||:!!||||||..!:!!:!!! !.!..!!|||:!::!!!!:||| TyrCysAsnLysLeuGluLysValPheAsnIleIleValLeuGlyGlnLeuLeuMetPhe 18281 : TATTGCAACAAACTCGAGAAAGTGTTCAATATCATTGTTCTGGGGCAATTGTTAATGTTC : 18340 213 : SerMetLeuIleCysLeuAsnGlyArgTyrThrAlaLeuPhePheLeu >>>> Targe : 229 ||||||||||||||||||:!!||| ! ! ! ! !:!! !! !:!! 1 SerMetLeuIleCysLeuAspGlyPheGlnIleLeuMetValGlyMet-- 18341 : AGCATGTTGATCTGTCTCGATGGATTTCAGATACTTATGGTTGGTATGag.......... : 18393 230 : t Intron 1 >>>> MetThrSerThrMet<->GlnLeuLeuMetPheThrTyrSerC : 242 008 bp !!: !:!! !||| ||||||||||||||||||||||||| +-IleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSerC 18394 : ...............acATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGCT : 19441 243 : ysAspGlyValIleGlnGluSerLeuLysValAlaProAlaValTyrSerSerProTrpA : 262 ||||| !!:!!|||::!|||||| !!....!||| !||||||||||||.!!||||||. ysAspCysIleIleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyProTrpT 19442 : GCGACTGCATCATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGA : 19501 263 : laTyrLeuProMetThrIleSerGlyLysMetLeuArgLysAspLeuValLeuValIleL : 282 !! !|||||||||!:! !..!|||||||||:!!||||||||||||:!!|||||||||: hrLeuLeuProMetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuValIleM 19502 : CACTTTTACCAATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCA : 19561 283 : euArgSerArgIleProCysCysLeuThrAlaLysGlyPhePheProIleSerLeuGluT : 302 !!||||||!!!:!!||||||||||||||||||!:!||||||||| !:!:|||||||||| etArgSerSerValProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGluT 19562 : TGAGATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAA : 19621 303 : hrTyrThrLys >>>> Target Intron 2 >>>> ValTrpThrThrAlaMetSe : 312 |||||||| ! 223 bp |||! !:!|||||| || hrTyrThrGly++ ++ValLeuSerThrAlaAlaSe 19622 : CGTACACAGGGgt.........................agGTTTTAAGCACCGCAGCCTC : 19874 313 : rTyrPheThrLeuLeuArgGlnThrMetAspAsp : 323 ||||||||||||||||!:!|||! ! !!::!! rTyrPheThrLeuLeuLysGlnArgSerGluAsn 19875 : ATACTTTACGTTGCTGAAGCAAAGATCAGAGAAT : 19909 vulgar: Lalb_14680 172 323 . KQ414828.1 18222 19909 + 400 M 56 168 5 0 2 I 0 1004 3 0 2 M 5 15 G 0 3 M 72 216 5 0 2 I 0 219 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 18223 19909 400 + . gene_id 5 ; sequence Lalb_14680 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 18223 18390 . + . KQ414828.1 exonerate:protein2genome:local exon 18223 18390 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18391 18392 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local intron 18391 19398 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 19397 19398 . + . intron_id 0 ; splice_site "AC" KQ414828.1 exonerate:protein2genome:local cds 19399 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19399 19632 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19909 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19909 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 18223 19909 400 + . alignment_id 5 ; Query Lalb_14680 ; Align 18223 173 168 ; Align 19399 229 15 ; Align 19417 234 216 ; Align 19856 306 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14680 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 394 Query range: 120 -> 324 Target range: 10840 -> 13161 121 : IleTyrAlaIleAspLeuCysHisHisSerValAspAsnIleLeuCysIleMetAsnPhe : 140 :!:||| !! !! :!!|||:!! !!!! !!|||||||||!!!|||||||||!:! ! LeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerVal 10841 : CTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTG : 10898 141 : HisValAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnLeuLys<-><->Ser : 158 |||:!!::! !|||||||||||||||||||||||||||!!!!!.|||... ..! HisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGln 10899 : CATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAA : 10958 159 : GluAsnValCysAspGlyProLeuLysArgVal<->ProSerAlaAlaGluAsnSerTyr : 177 ! .!.:!! ::: :::::: !||| !..!..!.!!...!..|||||| TyrGlnIleSerGluLysAsnMetGluSerValLeuGluAspCysThrArgArgSerTyr 10959 : TATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGTAGATCTTAC : 11018 178 : AlaThrPheLysArgCysValGlnGlnHisLysMetLeuIleAlaTyrCysAsnLysLeu : 197 ! !! !||||||!!!! !|||!:!||||||:!!! !||||||! !|||! !.!.|||||| GluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLysLeu 11019 : GAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAGCTT : 11078 198 : GluGluValPheGlyLeuValGlyPheSerGlnIleIleIlePheSerMetLeuIleCys : 217 |||.!.|||!:! ! !:!! !.!!.!!|||:!::!!:!:||||||:!!||||||||| GluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIleCys 11079 : GAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATTTGC : 11138 218 : LeuAsn{G} >>>> Target Intron 1 >>>> {ly}ArgTyrThrAlaLeuPhe : 226 ||| !{|} 1341 bp {||}||| !! ! !:!!||| LeuPhe{G}++ +-{ly}ArgSerIlePheMetPhe 11139 : CTCTTT{G}gt.........................aa{GG}CGCAGTATTTTCATGTTC : 12506 227 : PheLeuMetThrSerThrMetGlnLeuLeuMetPheThrTyrSerCysAspGlyValIle : 246 .!!:!! !:!!! !:!: !|||!!!||||||||||||||||||:!! !|||||| LeuIleCysGlyAlaMetValLeuLeuPheMetPheThrTyrSerCysAsnMetValIle 12507 : CTCATATGTGGCGCCATGGTTTTATTGTTTATGTTCACCTACAGCTGCAATATGGTGATA : 12566 247 : GlnGluSerLeuLysValAlaProAlaValTyrSerSerProTrpAlaTyrLeuProMet : 266 :!!:!!||| !!!.:!!||| !|||!.!||||||:!!! !|||.!! !:!!|||||| GluGlnSerAspAsnIleAlaPheAlaAlaTyrSerAlaLeuTrpThrGlyMetProMet 12567 : GAACAAAGCGATAATATTGCTTTTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATG : 12626 267 : ThrIleSerGlyLysMetLeuArgLysAspLeuValLeuValIleLeuArgSerArgIle : 286 !.!! !!!!||||||! !|||||| ! ||||||:!!:!!|||||| !||||||||| ! AsnLysThrGlyLysLysLeuArgHisAspLeuIleMetValIleGlyArgSerArgArg 12627 : AACAAAACTGGCAAAAAGCTACGGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGA : 12686 287 : ProCysCysLeuThrAlaLysGlyPhePheProIleSerLeuGluThrTyrThr--{L} : 305 !|||||||||||||||!!.||||||||||||:!:||||||||||||||||||##{:} ValCysCysLeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThr##{G}+ 12687 : GTTTGTTGTCTGACTGCGAATGGATTTTTCCCTGTGTCCTTAGAAACTTATACTAC{G}g : 12746 306 : >>>> Target Intron 2 >>>> {ys}ValTrpThrThrAlaMetSerTyrPheT : 315 357 bp {!!}::: !:!|||||| !|||||||||| + +-{lu}IleLeuSerThrAlaAlaSerTyrPheT 12747 : t.........................ac{ag}attttgAGTACCGCGGCGTCGTACTTCA : 13132 316 : hrLeuLeuArgGlnThrMetAspAspLeu : 324 |||||||||||.!.!.!:!:!!:|||:!! hrLeuLeuArgAsnAsnValGluAspVal 13133 : CATTATTGAGAAATAACGTAGAAGATGTA : 13161 vulgar: Lalb_14680 120 324 . KQ414828.1 10840 13161 + 394 M 37 111 G 0 6 M 12 36 G 0 3 M 50 150 S 0 1 5 0 2 I 0 1337 3 0 2 S 1 2 M 84 252 F 0 2 S 0 1 5 0 2 I 0 353 3 0 2 S 1 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10841 13161 394 + . gene_id 6 ; sequence Lalb_14680 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 10841 11147 . + . KQ414828.1 exonerate:protein2genome:local exon 10841 11147 . + . insertions 9 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 11148 11149 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 11148 12488 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12487 12488 . + . intron_id 0 ; splice_site "AA" KQ414828.1 exonerate:protein2genome:local cds 12489 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12489 12745 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13102 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13101 13102 . + . intron_id 1 ; splice_site "ac" KQ414828.1 exonerate:protein2genome:local cds 13103 13161 . + . KQ414828.1 exonerate:protein2genome:local exon 13103 13161 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10841 13161 394 + . alignment_id 6 ; Query Lalb_14680 ; Align 10841 121 111 ; Align 10958 158 36 ; Align 10997 170 150 ; Align 12491 221 252 ; Align 13105 306 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14680 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 242 Query range: 220 -> 307 Target range: 28526 -> 28787 221 : ArgTyrThrAlaLeuPhePheLeuMetThrSerThrMetGlnLeuLeuMetPheThrTyr : 240 ||| !.!! ! !! !|||! !||||||.!!..!! ||||||! !|||||||||||| ArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuTrpMetPheThrTyr 28527 : CGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTATGGATGTTCACGTAC : 28584 241 : SerCysAspGlyValIleGlnGluSerLeuLysValAlaProAlaValTyrSerSerPro : 260 ||||||||| !!:!!! ! !|||||||||!!.:!!||| !:!!||||||:!!.!!||| SerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyPro 28585 : AGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCA : 28644 261 : TrpAlaTyrLeuProMetThrIleSerGlyLysMetLeuArgLysAspLeuValLeuVal : 280 ||| ! !!||||||||| ||||||:::||||||||||||||| !:!!:!! TrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeu 28645 : TGGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTC : 28704 281 : IleLeuArgSerArgIleProCysCysLeuThrAlaLysGlyPhePheProIleSerLeu : 300 |||||||||:!!||| !|||! !! !||||||||| ||||||||| !!||||||||| IleLeuArgAlaArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeu 28705 : ATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTC : 28764 301 : GluThrTyrThrLysValTrp : 307 ||||||!:!|||||||||!:: GluThrPheThrLysValPhe 28765 : GAAACCTTTACTAAGGTATTT : 28787 vulgar: Lalb_14680 220 307 . KQ414828.1 28526 28787 + 242 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28527 28787 242 + . gene_id 7 ; sequence Lalb_14680 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28527 28787 . + . KQ414828.1 exonerate:protein2genome:local exon 28527 28787 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28527 28787 242 + . alignment_id 7 ; Query Lalb_14680 ; Align 28527 221 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14680 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 81 -> 156 Target range: 17818 -> 18156 82 : LeuPheLeuSerIleGlyLysHisGlySerAspArgPhePheProPheAlaLeu<->Pro : 100 :!!!!. :::|||||||||::: |||!!:|||.!..!!|||||| !:!! ! IleLeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpVal 17819 : ATTTTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTC : 17876 101 : GluSerProLeuTyrIleSerProTyrTyrGluIleAlaPhePheValGln >>>> Ta : 118 .!.! !||||||! !!:!!!|||||||||||||||...||| :::||| AsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln++ 17877 : AACTTGCCATTATCAATGACGCCATATTACgaaataactttttcattaCAGgt....... : 17932 119 : rget Intron 1 >>>> AlaLeuIleIleTyrAlaIleAspLeuCysHisHisSerV : 131 110 bp ..!||| !:!:||| !|||! !:!! !!:!! !! ++ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysP 17933 : ..................aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgct : 18079 132 : alAspAsnIleLeuCysIleMetAsnPheHisValAlaThrGlnPheArgIleLeuGlnT : 151 ||||||...|||||||||||||||!!.|||!.!|||||||||||||||:!!||||||| heAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnT 18080 : tcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAAT : 18139 152 : yrArgLeuSerAsnLeu : 156 |||||:!!:!!|||:!! yrArgMetAlaAsnMet 18140 : ACCGAATGGCGAATATG : 18156 vulgar: Lalb_14680 81 156 . KQ414828.1 17818 18156 + 165 M 18 54 G 0 3 M 18 54 5 0 2 I 0 106 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17819 18156 165 + . gene_id 8 ; sequence Lalb_14680 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17819 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17819 17929 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18156 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18156 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17819 18156 165 + . alignment_id 8 ; Query Lalb_14680 ; Align 17819 82 54 ; Align 17876 100 54 ; Align 18040 118 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14697 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 329 Query range: 6 -> 106 Target range: 4189 -> 5250 7 : ArgArgValValPheThrPheHisLeuIleGlyThrIleThrGlnLeuLeuMetPheThrTy : 27 !:!|||:!!..!||| !|||||||||! ||| !:!: !|||||||||||||||||||| GlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuMetPheThrTy 4190 : CAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGATGTTCACCTA : 4250 28 : rSerCysAspCysLeuLeuHisGluSerLeuGluIleAlaGluSerValTyrThrAlaGlnT : 48 ||||||||||||||||:!!!..|||||||||.!.:!:|||.!.:!!:!!||| !..!..!| rSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIleTyrAspCysSerT 4251 : CAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATATACGACTGCTCGT : 4313 49 : rpProLeuLeuProMetAsnAsnSerGlyLysMetLeuArgSerAspMetGlnLeuValIle : 68 || !! !|||||||||:!!!..||||||::!|||||||||!.!|||:!! !!!!|||||| rpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAspLeuThrPheValIle 4314 : GGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGACATTCGTCATT : 4373 69 : MetArgSerArgGluProCysSerMetSerAlaGlyGlyPhePheThrValSerLeuGluTh : 89 |||||||||! !||||||!!!:!:!!!||| !!||||||||| !!|||||||||||||| GlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePheProValSerLeuGluTh 4374 : GGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAAC : 4436 90 : rTyrThrLys >>>> Target Intron 1 >>>> ValLeuSerThrAlaAlaSerTy : 100 |||||||..! 761 bp :!!|||||||||||||||||||| rTyrThrSer++ ++IleLeuSerThrAlaAlaSerTy 4437 : GTACACTTCGgt.........................agATTTTAAGTACCGCAGCGTCATA : 5230 101 : rPheThrLeuLeuArgAsn : 106 ||||||||||||||||||| rPheThrLeuLeuArgAsn 5231 : CTTCACACTGCTACGAAAC : 5250 vulgar: Lalb_14697 6 106 . KQ414828.1 4189 5250 + 329 M 86 258 5 0 2 I 0 757 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 4190 5250 329 + . gene_id 1 ; sequence Lalb_14697 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 4190 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4190 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 5208 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 5207 5208 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 5209 5250 . + . KQ414828.1 exonerate:protein2genome:local exon 5209 5250 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 4190 5250 329 + . alignment_id 1 ; Query Lalb_14697 ; Align 4190 7 258 ; Align 5209 93 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14697 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 318 Query range: 7 -> 105 Target range: 19377 -> 19894 8 : ArgValValPheThrPheHisLeuIleGlyThrIleThrGlnLeuLeuMetPheThrTyr : 27 |||:!!:!!|||! !||||||:!! !!.! !!!: !||||||||||||||||||||| ArgLeuIlePheIlePheHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyr 19378 : CGACTGATTTTCATCTTTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTAC : 19435 28 : SerCysAspCysLeuLeuHisGluSerLeuGluIleAlaGluSerValTyrThrAlaGln : 47 ||||||||||||:!!:!!...|||||| !...! !||||||:!!||||||!:!!.!! SerCysAspCysIleIleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyPro 19436 : AGCTGCGACTGCATCATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCC : 19495 48 : TrpProLeuLeuProMetAsnAsnSerGlyLysMetLeuArgSerAspMetGlnLeuVal : 67 ||| !!||||||||||||!:! ..!|||||||||:!!|||!.!|||:!!..!|||||| TrpThrLeuLeuProMetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuVal 19496 : TGGACACTTTTACCAATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTT : 19555 68 : IleMetArgSerArgGluProCysSerMetSerAlaGlyGlyPhePheThrValSerLeu : 87 ||||||||||||!!!! !||||||!!!:!!!!!||| !!|||||||||..!||||||||| IleMetArgSerSerValProCysCysLeuThrAlaArgGlyPhePheValValSerLeu 19556 : ATCATGAGATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTA : 19615 88 : GluThrTyrThrLys >>>> Target Intron 1 >>>> ValLeuSerThrAlaA : 98 |||||||||||| ! 223 bp |||||||||||||||| GluThrTyrThrGly++ ++ValLeuSerThrAlaA 19616 : GAAACGTACACAGGGgt.........................agGTTTTAAGCACCGCAG : 19871 99 : laSerTyrPheThrLeuLeuArg : 105 ||||||||||||||||||||!:! laSerTyrPheThrLeuLeuLys 19872 : CCTCATACTTTACGTTGCTGAAG : 19894 vulgar: Lalb_14697 7 105 . KQ414828.1 19377 19894 + 318 M 85 255 5 0 2 I 0 219 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 19378 19894 318 + . gene_id 2 ; sequence Lalb_14697 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 19378 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19378 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19894 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19894 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 19378 19894 318 + . alignment_id 2 ; Query Lalb_14697 ; Align 19378 8 255 ; Align 19856 93 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14697 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 287 Query range: 7 -> 105 Target range: 33564 -> 34298 8 : ArgValValPheThrPheHisLeuIleGlyThrIleThrGlnLeuLeuMetPheThrTyr : 27 ||||||!.!||||||! ! !|||||| ! !:!:!:!||||||! !|||||||||||| ArgValAlaPheThrCysPheLeuIleThrGlyValSerGlnLeuTrpMetPheThrTyr 33565 : CGCGTTGCTTTCACGTGCTTCTTGATTACGGGCGTGAGTCAACTATGGATGTTCACGTAC : 33622 28 : SerCysAspCysLeuLeuHisGluSerLeuGluIleAlaGluSerValTyrThrAlaGln : 47 ||||||:!!|||:!! ! |||||||||.!.||||||||||||||||||.!!!.!! ! SerCysAsnCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyPro 33623 : AGTTGCAATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCA : 33682 48 : TrpProLeuLeuProMetAsnAsnSerGlyLysMetLeuArgSerAspMetGlnLeuVal : 67 ||| ! !|||||||||:::... ||||||:::||||||!.!|||:!:|||:!!:!! TrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeu 33683 : TGGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAGGATTTACAAGTGCTC : 33742 68 : IleMetArgSerArgGluProCysSerMetSerAlaGlyGlyPhePheThrValSerLeu : 87 |||:!!|||:!!|||..!|||! !:!!:!!!!!||| !!|||||||||:!!:!!!!!||| IleLeuArgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleThrLeu 33743 : ATCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATAACTCTC : 33802 88 : GluThrTyrThrLys >>>> Target Intron 1 >>>> ValLeuSerThrAlaA : 98 ||||||!:!|||||| 440 bp :!!:!!||||||:!! GluThrPheThrLys++ ++IleMetSerThrSerM 33803 : GAAACCTTTACTAAGgt.........................agATCATGAGTACATCAA : 34275 99 : laSerTyrPheThrLeuLeuArg : 105 !||||||||||||||||||!:! etSerTyrPheThrLeuLeuLys 34276 : TGTCGTATTTCACCCTACTAAAA : 34298 vulgar: Lalb_14697 7 105 . KQ414828.1 33564 34298 + 287 M 85 255 5 0 2 I 0 436 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 33565 34298 287 + . gene_id 3 ; sequence Lalb_14697 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 33565 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33565 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 1 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34298 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34298 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 33565 34298 287 + . alignment_id 3 ; Query Lalb_14697 ; Align 33565 8 255 ; Align 34260 93 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14697 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 278 Query range: 7 -> 105 Target range: 28526 -> 29230 8 : ArgValValPheThrPheHisLeuIleGlyThrIleThrGlnLeuLeuMetPheThrTyr : 27 ||||||!.!!!..!!! ! !! !!!: ! !:!:!:!||||||! !|||||||||||| ArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuTrpMetPheThrTyr 28527 : CGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTATGGATGTTCACGTAC : 28584 28 : SerCysAspCysLeuLeuHisGluSerLeuGluIleAlaGluSerValTyrThrAlaGln : 47 ||||||||||||:!! ! |||||||||.!.||||||||||||||||||.!!!.!! ! SerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyPro 28585 : AGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCA : 28644 48 : TrpProLeuLeuProMetAsnAsnSerGlyLysMetLeuArgSerAspMetGlnLeuVal : 67 ||| ! !|||||||||:::... ||||||:::||||||!.!|||:!:|||:!!:!! TrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeu 28645 : TGGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTC : 28704 68 : IleMetArgSerArgGluProCysSerMetSerAlaGlyGlyPhePheThrValSerLeu : 87 |||:!!|||:!!|||..!|||! !|||:!!!!!||| !!|||||||||:!!:!!|||||| IleLeuArgAlaArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeu 28705 : ATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTC : 28764 88 : GluThrTyrThrLys >>>> Target Intron 1 >>>> ValLeuSerThrAlaA : 98 ||||||!:!|||||| 410 bp :!!:!!||||||:!! GluThrPheThrLys++ ++IleMetSerThrSerM 28765 : GAAACCTTTACTAAGgt.........................agATCATGAGTACATCAA : 29207 99 : laSerTyrPheThrLeuLeuArg : 105 !||||||||||||||||||!:! etSerTyrPheThrLeuLeuLys 29208 : TGTCGTATTTCACATTATTAAAA : 29230 vulgar: Lalb_14697 7 105 . KQ414828.1 28526 29230 + 278 M 85 255 5 0 2 I 0 406 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28527 29230 278 + . gene_id 4 ; sequence Lalb_14697 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 28527 28781 . + . KQ414828.1 exonerate:protein2genome:local exon 28527 28781 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 28782 28783 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 28782 29191 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 29190 29191 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 29192 29230 . + . KQ414828.1 exonerate:protein2genome:local exon 29192 29230 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28527 29230 278 + . alignment_id 4 ; Query Lalb_14697 ; Align 28527 8 255 ; Align 29192 93 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14697 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 250 Query range: 7 -> 93 Target range: 23571 -> 23829 8 : ArgValValPheThrPheHisLeuIleGlyThrIleThrGlnLeuLeuMetPheThrTyr : 27 ||||||!.!|||.!!! ! !|||!!: ! !!!:!:!||||||! !|||||||||||| ArgValAlaPheAlaCysPheLeuMetMetGlyMetSerGlnLeuTrpMetPheThrTyr 23572 : CGCGTTGCTTTCGCGTGCTTCTTGATGATGGGCATGAGTCAACTATGGATGTTCACGTAT : 23629 28 : SerCysAspCysLeuLeuHisGluSerLeuGluIleAlaGluSerValTyrThrAlaGln : 47 ||||||||||||:!! ! |||||||||.!.||||||||||||||||||.!!!.!! ! SerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyPro 23630 : AGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCA : 23689 48 : TrpProLeuLeuProMetAsnAsnSerGlyLysMetLeuArgSerAspMetGlnLeuVal : 67 ||| ! !|||||||||:!!!!.! !||||||:!!||||||!.!!!::!!|||:!!:!! TrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysGluLeuGlnMetLeu 23690 : TGGATAAATTTACCAATGGACAAATTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTC : 23749 68 : IleMetArgSerArgGluProCysSerMetSerAlaGlyGlyPhePheThrValSerLeu : 87 |||:!!|||:!!|||..!|||! !:!!:!!!!!||| !!|||||||||:!!:!!|||||| IleLeuArgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleSerLeu 23750 : ATCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTC : 23809 88 : GluThrTyrThrLysVal : 93 ||||||!:!||||||||| GluThrPheThrLysVal 23810 : GAAACCTTTACTAAGGTA : 23829 vulgar: Lalb_14697 7 93 . KQ414828.1 23571 23829 + 250 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 23572 23829 250 + . gene_id 5 ; sequence Lalb_14697 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 23572 23829 . + . KQ414828.1 exonerate:protein2genome:local exon 23572 23829 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 23572 23829 250 + . alignment_id 5 ; Query Lalb_14697 ; Align 23572 8 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14697 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 247 Query range: 6 -> 106 Target range: 12487 -> 13146 7 : ArgArgValValPheThrPheHisLeuIleGlyThrIleThrGlnLeuLeuMetPheThr : 26 |||||| !:!!|||! !|||! !:!! !|||.!!!!:..! !|||!!!||||||||| ArgArgSerIlePheMetPheLeuIleCysGlyAlaMetValLeuLeuPheMetPheThr 12488 : AGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTTTTATTGTTTATGTTCACC : 12545 27 : TyrSerCysAspCysLeuLeuHisGluSerLeuGluIleAlaGluSerValTyrThrAla : 46 |||||||||:!! :!!:!!.!.:!!||| !.!.|||||| :!!!.!|||:!!||| TyrSerCysAsnMetValIleGluGlnSerAspAsnIleAlaPheAlaAlaTyrSerAla 12546 : TACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCTTTTGCGGCGTATTCGGCA : 12605 47 : GlnTrpProLeuLeuProMetAsnAsnSerGlyLysMetLeuArgSerAspMetGlnLeu : 66 ! !||| !! !:!!|||||||||!!.!!!||||||! !|||||| !|||:!! !:!! LeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeuArgHisAspLeuIleMet 12606 : CTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTACGGCATGATTTGATAATG : 12665 67 : ValIleMetArgSerArgGluProCysSerMetSerAlaGlyGlyPhePheThrValSer : 86 |||||| !|||||||||..! !|||!!!:!!!!!|||..!||||||||| !!|||||| ValIleGlyArgSerArgArgValCysCysLeuThrAlaAsnGlyPhePheProValSer 12666 : GTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATGGATTTTTCCCTGTGTCC : 12725 87 : LeuGluThrTyrThr--{L} >>>> Target Intron 1 >>>> {ys}ValLeuS : 95 |||||||||||||||##{:} 357 bp {!!}:::|||| LeuGluThrTyrThr##{G}++ +-{lu}IleLeuS 12726 : TTAGAAACTTATACTAC{G}gt.........................ac{ag}attttgA : 13111 96 : erThrAlaAlaSerTyrPheThrLeuLeuArgAsn : 106 ||||||||||||||||||||||||||||||||||| erThrAlaAlaSerTyrPheThrLeuLeuArgAsn 13112 : GTACCGCGGCGTCGTACTTCACATTATTGAGAAAT : 13146 vulgar: Lalb_14697 6 106 . KQ414828.1 12487 13146 + 247 M 85 255 F 0 2 S 0 1 5 0 2 I 0 353 3 0 2 S 1 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 12488 13146 247 + . gene_id 6 ; sequence Lalb_14697 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 12488 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12488 12745 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13102 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 13101 13102 . + . intron_id 0 ; splice_site "ac" KQ414828.1 exonerate:protein2genome:local cds 13103 13146 . + . KQ414828.1 exonerate:protein2genome:local exon 13103 13146 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 12488 13146 247 + . alignment_id 6 ; Query Lalb_14697 ; Align 12488 7 255 ; Align 13105 93 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14697 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 246 Query range: 12 -> 93 Target range: 38517 -> 38760 13 : PheHisLeuIleGlyThrIleThrGlnLeuLeuMetPheThrTyrSerCysAspCysLeu : 32 ||| !!!: ! !:!:!:!||||||! !||||||||||||||||||||||||:!! PheAlaThrMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIle 38518 : TTCGCAACGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATA : 38575 33 : LeuHisGluSerLeuGluIleAlaGluSerValTyrThrAlaGlnTrpProLeuLeuPro : 52 ! |||||||||.!.||||||||||||||||||.!!!.!! !||| ! !|||||| ThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuPro 38576 : ACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCA : 38635 53 : MetAsnAsnSerGlyLysMetLeuArgSerAspMetGlnLeuValIleMetArgSerArg : 72 |||:::... ||||||:::||||||!.!|||:!:|||:!!:!!|||:!!|||:!!||| MetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArg 38636 : ATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGA : 38695 73 : GluProCysSerMetSerAlaGlyGlyPhePheThrValSerLeuGluThrTyrThrLys : 92 ..!|||! !|||:!!!!!||| !!|||||||||:!!:!!||||||||||||!:!|||||| ArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys 38696 : CGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAG : 38755 93 : Val : 93 ||| Val 38756 : GTA : 38760 vulgar: Lalb_14697 12 93 . KQ414828.1 38517 38760 + 246 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38518 38760 246 + . gene_id 7 ; sequence Lalb_14697 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38518 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38518 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38518 38760 246 + . alignment_id 7 ; Query Lalb_14697 ; Align 38518 13 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14696 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 250 Query range: 4 -> 97 Target range: 19356 -> 19635 5 : ValGlnThrAspSerAlaArgArgPheIlePheLeuPhePheLeuLeuThrSerPheVal : 24 !.!.!.||| !!!! !! !|||.!.||||||:!!||| !:!! !.!!!!!.!. ! AlaAsnThrProThrArgThrArgLeuIlePheIlePheHisIleGlyAlaCysMetCys 19357 : GCAAATACACCTACCAGAACCCGACTGATTTTCATCTTTCACATAGGAGCATGCATGTGT : 19414 25 : HisLeuLeuMetPheThrTyrSerCysAspGlyValMetArgGluSerValLysValAla : 44 !!.||||||||||||||||||||||||||| !!:!!!!:|||||||||..!!....!||| GlnLeuLeuMetPheThrTyrSerCysAspCysIleIleArgGluSerThrSerThrAla 19415 : CAATTGCTGATGTTTACCTACAGCTGCGACTGCATCATAAGAGAAAGCACGAGCACCGCC : 19474 45 : AlaGlyIleTyrAsnSerProTrpCysTyrLeuArgPheAsnLysTyrGlyArgMetLeu : 64 ! !!.!:!:|||!:!.!!|||||| !|||! !.!.!:! ! !!|||!:!|||:!! GluAlaValTyrSerGlyProTrpThrLeuLeuProMetSerAlaAspGlyLysMetIle 19475 : GAGGCGGTGTACAGCGGTCCCTGGACACTTTTACCAATGAGCGCAGACGGAAAAATGATA : 19534 65 : ArgLysAspAlaIleLeuIleIleMetArgAlaLysValProCysTyrIleThrAlaArg : 84 ||||||||| !!!:|||:!!|||||||||:!!!..|||||||||! !:!:||||||||| ArgLysAspLeuMetLeuValIleMetArgSerSerValProCysCysLeuThrAlaArg 19535 : AGGAAAGATTTGATGCTCGTTATCATGAGATCGAGCGTACCTTGTTGCTTGACAGCCAGA : 19594 85 : GlyPhePheProIleThrLeuGluThrTyrThrLysVal : 97 ||||||||| !:!::!!||||||||||||||| !||| GlyPhePheValValSerLeuGluThrTyrThrGlyVal 19595 : GGATTCTTCGTCGTGTCTTTAGAAACGTACACAGGGGTA : 19635 vulgar: Lalb_14696 4 97 . KQ414828.1 19356 19635 + 250 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 19357 19635 250 + . gene_id 1 ; sequence Lalb_14696 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 19357 19635 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19635 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 19357 19635 250 + . alignment_id 1 ; Query Lalb_14696 ; Align 19357 5 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14696 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 249 Query range: 5 -> 105 Target range: 4174 -> 4474 6 : GlnThrAspSerAlaArgArgPheIlePheLeuPhePheLeuLeuThrSerPheValHisLe : 26 .!.||| !! ! !!:!|||.!!! !||||||||| !||| ! !!!!.!. !!!.|| AspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLe 4175 : GATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACT : 4235 27 : uLeuMetPheThrTyrSerCysAspGlyValMetArgGluSerValLysValAlaAlaGlyI : 47 ||||||||||||||||||||||||| !!:!!!!:|||||||||:!!!!.|||||| !!.!| uLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaI 4236 : GTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTA : 4298 48 : leTyrAsnSerProTrpCysTyrLeuArgPheAsnLysTyrGlyArgMetLeuArgLysAsp : 67 |||||:!!!!! !!||| !:!!|||! !.!.:!!!:!! !||||||||||||||||||||| leTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAsp 4299 : TATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGAT : 4358 68 : AlaIleLeuIleIleMetArgAlaLysValProCysTyrIleThrAlaArgGlyPhePhePr : 88 !! !!!!:!!||| |||:!!!:!|||||||||! !:!!|||||| !!||||||||||| LeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePhePr 4359 : TTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCC : 4421 89 : oIleThrLeuGluThrTyrThrLysValSerLysGluAspIleLysThrVal : 105 |:!::!!|||||||||||||||..!|||! ! ! ..! .!! ! |||:!! oValSerLeuGluThrTyrThrSerValIleHisSerThrPheHisThrIle 4422 : TGTGTCACTGGAAACGTACACTTCGGTAATTCATTCAACATTTCACACGATA : 4474 vulgar: Lalb_14696 5 105 . KQ414828.1 4174 4474 + 249 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 4175 4474 249 + . gene_id 2 ; sequence Lalb_14696 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 4175 4474 . + . KQ414828.1 exonerate:protein2genome:local exon 4175 4474 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 4175 4474 249 + . alignment_id 2 ; Query Lalb_14696 ; Align 4175 6 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14696 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 225 Query range: 0 -> 98 Target range: 12457 -> 12751 1 : LeuArgPheValValGlnThrAspSerAlaArgArgPheIlePheLeuPhePheLeuLeu : 20 |||...||| !.!.!.|||..! !||||||||| !||||||:!!|||.!!:!!! ! LeuAsnPhe***AlaAsnThrSerLeuAlaArgArgSerIlePheMetPheLeuIleCys 12458 : cttaatttttagGCTAATACTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGT : 12515 21 : ThrSerPheValHisLeuLeuMetPheThrTyrSerCysAspGlyValMetArgGluSer : 40 !:!!.!.||| |||!!!||||||||||||||||||:!! !|||!!:..!:!!||| GlyAlaMetValLeuLeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSer 12516 : GGCGCCATGGTTTTATTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGC : 12575 41 : ValLysValAlaAlaGlyIleTyrAsnSerProTrpCysTyrLeuArgPheAsnLysTyr : 60 ! !!!.:!!||| !!.! |||::::!!! !||| !:!!! !.!.|||||| ! AspAsnIleAlaPheAlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThr 12576 : GATAATATTGCTTTTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACT : 12635 61 : GlyArgMetLeuArgLysAspAlaIleLeuIleIleMetArgAlaLysValProCysTyr : 80 |||!:!! !|||||| ! ||| !|||:!!:!!||| !|||:!!!:! ! !|||! ! GlyLysLysLeuArgHisAspLeuIleMetValIleGlyArgSerArgArgValCysCys 12636 : GGCAAAAAGCTACGGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGT : 12695 81 : IleThrAlaArgGlyPhePheProIleThrLeuGluThrTyrThrLysValSer : 98 :!:||||||!.!||||||||||||:!::!!|||||||||||||||! !|||||| LeuThrAlaAsnGlyPhePheProValSerLeuGluThrTyrThrThrValSer 12696 : CTGACTGCGAATGGATTTTTCCCTGTGTCCTTAGAAACTTATACTACGGTGAGT : 12751 vulgar: Lalb_14696 0 98 . KQ414828.1 12457 12751 + 225 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 12458 12751 225 + . gene_id 3 ; sequence Lalb_14696 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 12458 12751 . + . KQ414828.1 exonerate:protein2genome:local exon 12458 12751 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 12458 12751 225 + . alignment_id 3 ; Query Lalb_14696 ; Align 12458 1 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14696 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 219 Query range: 11 -> 97 Target range: 33564 -> 33822 12 : ArgPheIlePheLeuPhePheLeuLeuThrSerPheValHisLeuLeuMetPheThrTyr : 31 ||| !! !||| !! !||||||:!!|||.!! ! !!!.|||! !|||||||||||| ArgValAlaPheThrCysPheLeuIleThrGlyValSerGlnLeuTrpMetPheThrTyr 33565 : CGCGTTGCTTTCACGTGCTTCTTGATTACGGGCGTGAGTCAACTATGGATGTTCACGTAC : 33622 32 : SerCysAspGlyValMetArgGluSerValLysValAlaAlaGlyIleTyrAsnSerPro : 51 ||||||:!! !!:!!! ! !||||||:!!!!.:!!|||! !..!:!:||| !.!!||| SerCysAsnCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyPro 33623 : AGTTGCAATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCA : 33682 52 : TrpCysTyrLeuArgPheAsnLysTyrGlyArgMetLeuArgLysAspAlaIleLeuIle : 71 ||| !!|||! !.!.:::|||:::|||::::::|||||||||||| ! !:!!:!! TrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeu 33683 : TGGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAGGATTTACAAGTGCTC : 33742 72 : IleMetArgAlaLysValProCysTyrIleThrAlaArgGlyPhePheProIleThrLeu : 91 |||:!!||||||!:! !|||! ! !:!:|||||| !!||||||||| !!||||||||| IleLeuArgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleThrLeu 33743 : ATCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATAACTCTC : 33802 92 : GluThrTyrThrLysVal : 97 ||||||!:!||||||||| GluThrPheThrLysVal 33803 : GAAACCTTTACTAAGGta : 33822 vulgar: Lalb_14696 11 97 . KQ414828.1 33564 33822 + 219 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 33565 33822 219 + . gene_id 4 ; sequence Lalb_14696 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 33565 33822 . + . KQ414828.1 exonerate:protein2genome:local exon 33565 33822 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 33565 33822 219 + . alignment_id 4 ; Query Lalb_14696 ; Align 33565 12 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14696 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 215 Query range: 11 -> 99 Target range: 23571 -> 23835 12 : ArgPheIlePheLeuPhePheLeuLeuThrSerPheValHisLeuLeuMetPheThrTyr : 31 ||| !! !||| !! !||||||:!!! !.!!.!. !!!.|||! !|||||||||||| ArgValAlaPheAlaCysPheLeuMetMetGlyMetSerGlnLeuTrpMetPheThrTyr 23572 : CGCGTTGCTTTCGCGTGCTTCTTGATGATGGGCATGAGTCAACTATGGATGTTCACGTAT : 23629 32 : SerCysAspGlyValMetArgGluSerValLysValAlaAlaGlyIleTyrAsnSerPro : 51 ||||||||| !!:!!! ! !||||||:!!!!.:!!|||! !..!:!:||| !.!!||| SerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyPro 23630 : AGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCTGGACCA : 23689 52 : TrpCysTyrLeuArgPheAsnLysTyrGlyArgMetLeuArgLysAspAlaIleLeuIle : 71 ||| !!|||! !.!.:!!|||!:!|||!:!:!!|||||||||!!: ! !:!!:!! TrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysGluLeuGlnMetLeu 23690 : TGGATAAATTTACCAATGGACAAATTTGGAAAACTGCTAAGAAAAGAATTGCAAATGCTC : 23749 72 : IleMetArgAlaLysValProCysTyrIleThrAlaArgGlyPhePheProIleThrLeu : 91 |||:!!||||||!:! !|||! ! !:!:|||||| !!||||||||| !!|||:!!||| IleLeuArgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIleSerLeu 23750 : ATCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTC : 23809 92 : GluThrTyrThrLysValSerLys : 99 ||||||!:!|||||||||! !||| GluThrPheThrLysValPheLys 23810 : GAAACCTTTACTAAGGTATTTAAA : 23835 vulgar: Lalb_14696 11 99 . KQ414828.1 23571 23835 + 215 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 23572 23835 215 + . gene_id 5 ; sequence Lalb_14696 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 23572 23835 . + . KQ414828.1 exonerate:protein2genome:local exon 23572 23835 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 23572 23835 215 + . alignment_id 5 ; Query Lalb_14696 ; Align 23572 12 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14696 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 212 Query range: 15 -> 99 Target range: 38514 -> 38766 16 : LeuPhePheLeuLeuThrSerPheValHisLeuLeuMetPheThrTyrSerCysAspGly : 35 :!!||| !:!!|||.!! ! !!!.|||! !||||||||||||||||||||| !! MetPheAlaThrMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCys 38515 : ATGTTCGCAACGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGC : 38572 36 : ValMetArgGluSerValLysValAlaAlaGlyIleTyrAsnSerProTrpCysTyrLeu : 55 :!!! ! !||||||:!!!!.:!!|||! !..!:!!||| !.!!|||||| !!||| IleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeu 38573 : ATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTA : 38632 56 : ArgPheAsnLysTyrGlyArgMetLeuArgLysAspAlaIleLeuIleIleMetArgAla : 75 ! !.!.:::|||:::|||::::::|||||||||||| ! !:!!:!!|||:!!|||||| ProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAla 38633 : CCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCG : 38692 76 : LysValProCysTyrIleThrAlaArgGlyPhePheProIleThrLeuGluThrTyrThr : 95 !:! !|||! !! !:!:|||||| !!||||||||| !!|||:!!|||||||||!:!||| ArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThr 38693 : AGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACT : 38752 96 : LysValSerLys : 99 ||||||! !||| LysValPheLys 38753 : AAGGTATTTAAA : 38766 vulgar: Lalb_14696 15 99 . KQ414828.1 38514 38766 + 212 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38515 38766 212 + . gene_id 6 ; sequence Lalb_14696 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38515 38766 . + . KQ414828.1 exonerate:protein2genome:local exon 38515 38766 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38515 38766 212 + . alignment_id 6 ; Query Lalb_14696 ; Align 38515 16 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14696 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 211 Query range: 11 -> 99 Target range: 28526 -> 28790 12 : ArgPheIlePheLeuPhePheLeuLeuThrSerPheValHisLeuLeuMetPheThrTyr : 31 ||| !! !!!. !! !|||! !:!!|||.!! ! !!!.|||! !|||||||||||| ArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuTrpMetPheThrTyr 28527 : CGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTATGGATGTTCACGTAC : 28584 32 : SerCysAspGlyValMetArgGluSerValLysValAlaAlaGlyIleTyrAsnSerPro : 51 ||||||||| !!:!!! ! !||||||:!!!!.:!!|||! !..!:!!||| !.!!||| SerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyPro 28585 : AGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCA : 28644 52 : TrpCysTyrLeuArgPheAsnLysTyrGlyArgMetLeuArgLysAspAlaIleLeuIle : 71 ||| !!|||! !.!.:::|||:::|||::::::|||||||||||| ! !:!!:!! TrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeu 28645 : TGGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTC : 28704 72 : IleMetArgAlaLysValProCysTyrIleThrAlaArgGlyPhePheProIleThrLeu : 91 |||:!!||||||!:! !|||! !! !:!:|||||| !!||||||||| !!|||:!!||| IleLeuArgAlaArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeu 28705 : ATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTC : 28764 92 : GluThrTyrThrLysValSerLys : 99 ||||||!:!|||||||||! !||| GluThrPheThrLysValPheLys 28765 : GAAACCTTTACTAAGGTATTTAAA : 28790 vulgar: Lalb_14696 11 99 . KQ414828.1 28526 28790 + 211 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28527 28790 211 + . gene_id 7 ; sequence Lalb_14696 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28527 28790 . + . KQ414828.1 exonerate:protein2genome:local exon 28527 28790 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28527 28790 211 + . alignment_id 7 ; Query Lalb_14696 ; Align 28527 12 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14699 [mRNA] [translate_table: standard] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 307 -> 350 Target range: 1228545 -> 1228416 308 : TyrSerIleGlnTrpTyrArgValSerAlaPheLeuArgCysGluAlaSerMetVa : 326 |||||| ! !||||||!:!||||||||| !!!!:! ! ! ! !! !|||:! TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 327 : lMetLeuArgSerGlnLysProSerTyrIleThrAlaGlyLysLeuTyrIleMetH : 345 !...:!!|||:!!! !||||||!!! !:!:||||||||| !|||||| !|||: tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 346 : isLeuGluAsnPheSer : 350 !!:!!|||||||||:!! snMetGluAsnPheAla 1228433 : ACATGGAGAACTTTGCA : 1228417 vulgar: Lalb_14699 307 350 . KQ414851.1 1228545 1228416 - 101 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228417 1228545 101 - . gene_id 1 ; sequence Lalb_14699 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228417 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228417 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228417 1228545 101 - . alignment_id 1 ; Query Lalb_14699 ; Align 1228546 308 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14680 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 580 Query range: 84 -> 319 Target range: 1707001 -> 1709237 85 : SerIleGlyLysHisGlySerAspArgPhePheProPheAlaLeu<->ProGluSe : 102 ||||||||||||::: |||||||||.!..!! ! !! !!!! !!!:! SerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAspPh 1707002 : AgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGACTT : 1707056 103 : rProLeuTyrIleSerProTyrTyrGluIleAlaPhePheValGln >>>> Tar : 118 !||| ! !!!:!!!||||||||||||||| !||| !||| eProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707057 : TCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt........ : 1707106 119 : get Intron 1 >>>> AlaLeuIleIleTyrAlaIleAspLeuCysHisHisS : 130 276 bp !.!!!!|||:!! !:!! !:!! !!:!!! !! ++ValPheIleValMetTyrValCysIleSerTyrLeuC 1707107 : .................agGTTTTTATCGTAATGTACGTTTGCATAAGCTACCTTT : 1707416 131 : erValAspAsnIleLeuCysIleMetAsnPheHisValAlaThrGlnPheArgIle : 148 !!:!!||||||.!!||||||!!:!!:|||.!.|||..!|||||||||||||||||| ysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIle 1707417 : GTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATA : 1707470 149 : LeuGlnTyrArgLeuSerAsnLeuLysSerGluAsnVal<->CysAspGlyProLe : 166 |||||||||||||||||||||:!! .!!! !|||! ! ||| LeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAspLysIleSe 1707471 : TTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttc : 1707527 167 : uLysArgValProSerAlaAlaGluAsnSerTyrAlaThrPheLysArgCysValG : 185 |||:::...|||||| !:!!!!:.!.!!!||||||! !||||||!.!|||:!!| rLysLysThrProSerAsnSerAspGluCysTyrAlaLysPheLysAsnCysIleG 1707528 : gaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTC : 1707584 186 : lnGlnHisLysMetLeuIleAlaTyrCysAsnLysLeuGluGluValPheGlyLeu : 203 ||||||||:!! ||||||! !|||||||||:!!|||:!!||||||||||||||| lnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluValPheGlyLeu 1707585 : AACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGGTGTTCGGTTTA : 1707638 204 : ValGlyPheSerGlnIleIleIlePheSerMetLeuIleCysLeuAsnGlyArgTy : 222 !!! !.!!:!!|||:!::!::!!||||||:!!|||!!:||||||:!!||| || PheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAspGly---Ty 1707639 : TTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGGA---TA : 1707692 223 : rThrAlaLeu >>>> Target Intron 2 >>>> PhePheLeuMetThrSe : 231 | !!.!:!! 493 bp ||| !|||! ! !!! rLeuValMet++ -+PheHisLeuThrGlyCy 1707693 : TTTGGTGATGgt.........................tgTTTCACCTAACGGGATG : 1708212 232 : rThrMetGlnLeuLeuMetPheThrTyrSerCysAspGlyValIleGlnGluSerL : 250 ! ! |||||||||||||||||||||||||||||| !!:!!|||!:!||||||| sLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerL 1708213 : CCTGTGCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCT : 1708269 251 : euLysValAlaProAlaValTyrSerSerProTrpAlaTyrLeuProMetThrIle : 268 ||!!.|||||| !|||:!!|||..!!!! !!||| !:!!||||||||| !! ! euAsnValAlaAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArg 1708270 : TGAACGTGGCCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGA : 1708323 269 : SerGlyLysMetLeuArgLysAspLeuValLeuValIleLeuArgSerArgIlePr : 287 ||||||::!||||||||||||||||||..!!!!|||||| !|||||||||:!!|| SerGlyArgMetLeuArgLysAspLeuThrPheValIleGlyArgSerArgValPr 1708324 : TCTGGGCGAATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACC : 1708380 288 : oCysCysLeuThrAlaLysGlyPhePheProIleSerLeuGluThrTyrThrLys : 306 |||||||||||||||| ||||||||||||:!:||||||||||||||||||..! oCysCysLeuThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSer+ 1708381 : TTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGg : 1708437 307 : >>>> Target Intron 3 >>>> ValTrpThrThrAlaMetSerTyrPheT : 315 759 bp :!!! !:!|||||| !|||||||||| + ++IleLeuSerThrAlaAlaSerTyrPheT 1708438 : t.........................agATTTTAAGTACCGCAGCGTCATACTTCA : 1709223 316 : hrLeuLeuArgGln : 319 |||||||||||:!! hrLeuLeuArgLys 1709224 : CACTGCTACGAAAA : 1709237 vulgar: Lalb_14680 84 319 . KQ414915.1 1707001 1709237 + 580 M 15 45 G 0 3 M 18 54 5 0 2 I 0 272 3 0 2 M 44 132 G 0 3 M 59 177 G 1 0 M 4 12 5 0 2 I 0 489 3 0 2 M 80 240 5 0 2 I 0 755 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707002 1709237 580 + . gene_id 1 ; sequence Lalb_14680 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1707002 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707002 1707103 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707703 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707703 . + . insertions 3 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1707704 1707705 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707704 1708196 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708195 1708196 . + . intron_id 1 ; splice_site "TG" KQ414915.1 exonerate:protein2genome:local cds 1708197 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708197 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709237 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709237 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1707002 1709237 580 + . alignment_id 1 ; Query Lalb_14680 ; Align 1707002 85 45 ; Align 1707050 100 54 ; Align 1707380 118 132 ; Align 1707515 162 177 ; Align 1707692 222 12 ; Align 1708197 226 240 ; Align 1709196 306 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14680 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 517 Query range: 84 -> 320 Target range: 1694355 -> 1696257 85 : SerIleGlyLysHisGlySerAspArgPhePheProPheAlaLeu<->ProGluSe : 102 !:!:!!||||||:!! !|||!!:|||.!.!!.|||||| !:!! !!!:! AsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTrpValAspPh 1694356 : AATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTGGGTTGACTT : 1694410 103 : rProLeuTyrIleSerProTyrTyrGluIleAlaPhePheValGln >>>> Tar : 118 !||| ! :!:|||||||||||||||:!! !|||.!!:!!||| eProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGln++ 1694411 : TCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGgt........ : 1694460 119 : get Intron 1 >>>> AlaLeuIleIleTyrAlaIleAspLeuCysHisHisS : 130 409 bp .!!||| !:!:||| !:!!! !:!!|||:!! ! ++ThrLeuCysValTyrHisValGlyIleCysTyrMetC 1694461 : .................agACACTTTGCGTGTACCATGTCGGTATATGTTACATGT : 1694903 131 : erValAspAsnIleLeuCysIleMetAsnPheHisValAlaThrGlnPheArgIle : 148 !! !!|||||||||||| !!:!!:!!|||.!!|||||||||||||||||||||||| ysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGlnPheArgIle 1694904 : GCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAATTTCGTATC : 1694957 149 : LeuGlnTyrArgLeuSerAsnLeuLysSer<-><->GluAsnValCysAspGlyPr : 165 ||||||||||||!!!! !||||||!..!:! |||!!. ! |||||| LeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLysGlnThrAspGlyAr 1694958 : CTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAACAGACGGTcg : 1695014 166 : oLeuLysArgVal<-><->ProSerAlaAlaGluAsnSerTyrAlaThrPheLysA : 182 ...::: !!!:! !.!!! :!!|||||| ! !!!.|||! gGluLeuGluIleGlyTyrThrAsnPheThrValAspSerTyrLeuGlnLeuLysS 1695015 : agaattggaaattggtTACACAAATTTCACAGTCGATAGTTACTTACAATTGAAGA : 1695071 183 : rgCysValGlnGlnHisLysMetLeuIleAlaTyrCysAsnLysLeuGluGluVal : 200 !!||||||||| ! |||:!! |||! !!.!||||||!!.|||||||||.!.:!! erCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeuGluAsnIle 1695072 : GTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTGGAGAACATA : 1695125 201 : PheGlyLeuValGlyPheSerGlnIleIleIlePheSerMetLeuIleCysLeuAs : 219 |||..!|||:!!! !.!!.!!|||:!::!!.!!.!.:!!|||:!!:!!|||||| PheSerLeuLeuValLeuGlyGlnValLeuPheLeuAlaMetValLeuCysLeuVa 1695126 : TTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTACTTTGCCTCGT : 1695182 220 : nGlyArgTyrThrAlaLeuPhePheLeuMet{T} >>>> Target Intron 2 : 230 ||| ! ! ! !||| ! !||| { } 451 bp lGlyTyrGlnLeuPheLeuValSerLeuGlu{A}++ 1695183 : GGGATATCAGCTATTTCTGGTAAGTTTGGAA{C}gt.................... : 1695218 231 : >>>> {hr}SerThrMetGlnLeuLeuMetPheThrTyrSerCysAspGlyVal : 245 { !}!!! ! ||||||!!!||||||||||||||||||||||||:!! ++{rg}ThrLeuCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeu 1695219 : .....ag{GC}ACTTTGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTG : 1695711 246 : IleGlnGluSerLeuLysValAlaProAlaValTyrSerSerProTrpAlaTyrLe : 264 ! !::!||||||:!! ! |||::! !||||||!:!:!!!!!||||||||| !!|| ThrArgGluSerMetAspValSerArgAlaValPheAlaArgProTrpAlaAsnLe 1695712 : ACAAGAGAGAGCATGGACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCT : 1695768 265 : uProMetThrIleSerGlyLysMetLeuArgLysAspLeuValLeuValIleLeuA : 283 ||||||| !! !!:!||||||! :!!|||:!!..!:!!:!!:!!||||||:!!| uProMetAspArgAsnGlyLysSerValArgGlnSerMetLeuMetValIleMetA 1695769 : GCCAATGGATAGAAATGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGA : 1695825 284 : rgSerArgIleProCysCysLeuThrAlaLysGlyPhePheProIleSerLeuGlu : 301 |||||!.!! !|||||||||||||||!..||||||||||||:!!||||||||| rgSerAsnArgCysCysCysLeuThrAlaSerGlyPhePheProValSerLeuGlu 1695826 : GGTCGAACAGGTGTTGCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAG : 1695879 302 : ThrTyrThrLys >>>> Target Intron 3 >>>> ValTrpThrThrAla : 310 ||||||||| ! 319 bp ||| !:!|||||| ThrTyrThrGly++ ++ValLeuSerThrAla 1695880 : ACTTACACTGGGgt.........................agGTCCTCAGCACTGCA : 1696225 311 : MetSerTyrPheThrLeuLeuArgGlnThr : 320 |||||||||||||||||||||||||||:!! MetSerTyrPheThrLeuLeuArgGlnSer 1696226 : ATGTCATACTTTACACTACTGAGACAATCG : 1696257 vulgar: Lalb_14680 84 320 . KQ414915.1 1694355 1696257 + 517 M 15 45 G 0 3 M 18 54 5 0 2 I 0 405 3 0 2 M 41 123 G 0 6 M 11 33 G 0 6 M 60 180 S 0 1 5 0 2 I 0 447 3 0 2 S 1 2 M 75 225 5 0 2 I 0 315 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694356 1696257 517 + . gene_id 2 ; sequence Lalb_14680 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694356 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694356 1694457 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695215 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695215 . + . insertions 12 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695216 1695217 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695216 1695666 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1695665 1695666 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695667 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695667 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 2 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696257 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696257 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694356 1696257 517 + . alignment_id 2 ; Query Lalb_14680 ; Align 1694356 85 45 ; Align 1694404 100 54 ; Align 1694867 118 123 ; Align 1694996 159 33 ; Align 1695035 170 180 ; Align 1695669 231 225 ; Align 1696213 306 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14680 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 389 Query range: 172 -> 306 Target range: 1712068 -> 1712648 173 : AlaGluAsnSerTyrAlaThrPheLysArgCysValGlnGlnHisLysMetLeuIl : 191 |||!!:|||||||||! !..!|||||||||||||||!::||||||:!! |||!! AlaAspAsnSerTyrAspValPheLysArgCysValArgGlnHisGlnSerLeuMe 1712069 : GCGGATAACTCTTACGACGTTTTCAAAAGATGCGTTCGTCAACATCAATCTCTGAT : 1712123 192 : eAlaTyrCysAsnLysLeuGluGluValPheGlyLeuValGlyPheSerGlnIleI : 210 :|||!:!|||...||||||||||||:::|||.!!:!!:!! !.!..!!|||:!:: tAlaPheCysGluLysLeuGluGluMetPheSerMetIleIleLeuGlyGlnLeuL 1712124 : GGCTTTCTgcgagaaactcgaagaaatgTTCAGTATGATTATACTGGGGCAATTGT : 1712180 211 : leIlePheSerMetLeuIleCysLeuAsnGlyArgTyrThrAlaLeuPhePheLeu : 228 !!:!:||||||!!:!!!!!:||||||:!!! ! !! ! ..! !||| !! !! ! euValPheSerIlePheMetCysLeuAspValCysGlnValLeuLeuValSerSer 1712181 : TAGTGTTCAGTATTTTTATGTGTCTCGACGTGTGCCAAGTACTTCTGGTTAGTTCA : 1712234 229 : Met{T} >>>> Target Intron 1 >>>> {hr}SerThrMetGlnLeuLe : 236 !!:{!} 178 bp { !}!!!! ! |||||||| Ile{A}+- -+{rg}CysMetCysGlnLeuLe 1712235 : ATT{A}gc.........................gg{GA}TGTATGTGTCAATTGCT : 1712436 237 : uMetPheThrTyrSerCysAspGlyValIleGlnGluSerLeuLysValAlaProA : 255 |||||||||||||||||||||| !!:!!||| !|||||||||!!.|||.!! !| uMetPheThrTyrSerCysAspCysIleIleThrGluSerLeuAsnValThrGluA 1712437 : GATGTTTACGTACAGCTGCGATTGTATAATAACGGAAAGTTTGAACGTGACGGAAG : 1712493 256 : laValTyrSerSerProTrpAlaTyrLeuProMetThrIleSerGlyLysMetLeu : 273 ||||||||..!.!!|||||| !! !|||||||||!:!! !!!|||!:!|||:!! laValTyrAspGlyProTrpProArgLeuProMetSerThrArgGlyArgMetIle 1712494 : CGGTGTACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGAAGAATGATA : 1712547 274 : ArgLysAspLeuValLeuValIleLeuArgSerArgIleProCysCysLeuThrAl : 292 ||||||||||||:!!|||||||||:!!|||||||||:!!||||||||||||||||| ArgLysAspLeuIleLeuValIleIleArgSerArgValProCysCysLeuThrAl 1712548 : AGGAAGGATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTGCTTGACCGC : 1712604 293 : aLysGlyPhePheProIleSerLeuGluThrTyrThrLysVal : 306 |!:!||||||||| !||||||||||||||||||||||||||| aArgGlyPhePheValIleSerLeuGluThrTyrThrLysVal 1712605 : CAGAGGATTCTTCGTAATATCTTTGGAAACGTATACGAAGGTA : 1712648 vulgar: Lalb_14680 172 306 . KQ414915.1 1712068 1712648 + 389 M 57 171 S 0 1 5 0 2 I 0 174 3 0 2 S 1 2 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712069 1712648 389 + . gene_id 3 ; sequence Lalb_14680 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1712069 1712240 . + . KQ414915.1 exonerate:protein2genome:local exon 1712069 1712240 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712241 1712242 . + . intron_id 1 ; splice_site "GC" KQ414915.1 exonerate:protein2genome:local intron 1712241 1712418 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1712417 1712418 . + . intron_id 0 ; splice_site "GG" KQ414915.1 exonerate:protein2genome:local cds 1712419 1712648 . + . KQ414915.1 exonerate:protein2genome:local exon 1712419 1712648 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712069 1712648 389 + . alignment_id 3 ; Query Lalb_14680 ; Align 1712069 173 171 ; Align 1712421 231 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14680 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 261 Query range: 220 -> 312 Target range: 1702980 -> 1703256 221 : ArgTyrThrAlaLeuPhePheLeuMetThrSerThrMetGlnLeuLeuMetPheTh : 239 ||| !||| !:!!||| !:!!:!: !||| ! |||||||||:!:||||| ArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLeuLeuPheTh 1702981 : CGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATTGCTATTTAC : 1703035 240 : rTyrSerCysAspGlyValIleGlnGluSerLeuLysValAlaProAlaValTyrS : 258 ||||||||||||||||:!!|||:!!|||||| !!!.:!!!.! !!|||:!!||| rTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaIleTyrL 1703036 : CTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGATATACC : 1703092 259 : erSerProTrpAlaTyrLeuProMetThrIleSerGlyLysMetLeuArgLysAsp : 276 !.!!|||||| !:!!||||||||| !! !:!!|||!:!! !||||||!:!||| euGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArgArgAsp 1703093 : TCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGAAGAGAC : 1703146 277 : LeuValLeuValIleLeuArgSerArgIleProCysCysLeuThrAlaLysGlyPh : 295 |||..!:!!||||||:!!|||||||||! ! !! !!||||||||||||!..||||| LeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSerGlyPh 1703147 : TTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAGCGGATT : 1703203 296 : ePheProIleSerLeuGluThrTyrThrLysValTrpThrThrAlaMetSer : 312 |||||||:!!||||||||||||! !|||! !|||!::!.! !:!!.!.||| ePheProValSerLeuGluThrCysThrThrValPheAsnPheSerPheSer 1703204 : CTTTCCTGTTTCGCTGGAAACTTGTACCACGGTATTCAATTTCTCATTCTCT : 1703256 vulgar: Lalb_14680 220 312 . KQ414915.1 1702980 1703256 + 261 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702981 1703256 261 + . gene_id 4 ; sequence Lalb_14680 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702981 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1702981 1703256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702981 1703256 261 + . alignment_id 4 ; Query Lalb_14680 ; Align 1702981 221 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14680 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 244 Query range: 220 -> 319 Target range: 1689489 -> 1690079 221 : ArgTyrThrAlaLeuPhePheLeuMetThrSerThrMetGlnLeuLeuMetPheTh : 239 ||| !! ! !|||||| !:!!!!: !||| !!!:!..::::::...||||| ArgLeuIlePheLeuPheHisMetIleGlySerPheIleHisIleIlePhePheTh 1689490 : CGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCacataattttcttcac : 1689544 240 : rTyrSerCysAspGlyValIleGlnGluSerLeuLysValAlaProAlaValTyrS : 258 ||||||||||! !|||:!!|||:!!||||||:!! ! :!!||| !!|||..!|||: rTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleAlaThrAlaThrTyrA 1689545 : gtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCAACAGCAACGTATG : 1689601 259 : erSerProTrpAlaTyrLeuProMetThrIleSerGlyLysMetLeuArgLysAsp : 276 !!.!! !|||.!! !|||||||||!.!! ! !|||||||||:!!||| !:!! laGlyMetTrpThrValLeuProMetAsnLysValGlyLysMetIleArgGlyAsn 1689602 : CAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAATGATACGAGGAAAT : 1689655 277 : LeuValLeuValIleLeuArgSerArgIleProCysCysLeuThrAlaLysGlyPh : 295 :!! !|||:!!! !:!!|||||| ! !|||||||||:!!|||||| ||||| MetLysLeuMetThrValArgSerLeuGlnProCysCysIleThrAlaGlyGlyPh 1689656 : ATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAACTGCTGGTGGATT : 1689712 296 : ePheProIleSerLeuGluThrTyrThrLys >>>> Target Intron 1 >> : 306 |||||||:!!||||||:!!||| !||| ! 293 bp ePheProValSerLeuLysThrAlaThrAla++ 1689713 : CTTTCCTGTCTCCTTGAAAACTGCTACCGCGgt....................... : 1689747 307 : >> ValTrpThrThrAlaMetSerTyrPheThrLeuLeuArgGln : 319 :!! !!:!:!!.!!||||||||||||||||||:!!|||:!! ++LeuMetSerSerThrMetSerTyrPheThrLeuMetArgGlu 1689748 : ..agCTAATGAGTTCCACAATGTCGTATTTCACGCTCATGAGAGAG : 1690079 vulgar: Lalb_14680 220 319 . KQ414915.1 1689489 1690079 + 244 M 85 255 5 0 2 I 0 289 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1689490 1690079 244 + . gene_id 5 ; sequence Lalb_14680 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1689490 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689490 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690079 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690079 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1689490 1690079 244 + . alignment_id 5 ; Query Lalb_14680 ; Align 1689490 221 255 ; Align 1690038 306 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14680 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 238 Query range: 114 -> 220 Target range: 1699626 -> 1699956 115 : PheValGlnAlaLeuIleIleTyrAlaIleAspLeuCysHisHisSerValAspAs : 133 |||!.!|||!.!||| !:!:||| !:!!! !:!!|||:!! !!!! !!||||| PheAlaGlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAs 1699627 : TTTGCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAA : 1699681 134 : nIleLeuCysIleMetAsnPheHisValAlaThrGlnPheArgIleLeuGlnTyrA : 152 |:!!||||||:!:||||||.!.|||!.!|||||||||||||||||||||||||||| nLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrA 1699682 : CCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACA : 1699738 153 : rgLeuSerAsnLeuLysSerGluAsn<-><-><->ValCysAspGlyProLeuLys : 167 |||||||||||||| ..! !||| ||| !|||..! !! !!.. rgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSer 1699739 : GGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGC : 1699792 168 : ArgValProSerAla<->AlaGluAsnSerTyrAlaThrPheLysArgCysValGl : 185 !!.!! !||| ! |||||||||!!!||| !.!!||||||!.!||||||!: AlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValAr 1699793 : GCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACG : 1699849 186 : nGlnHisLysMetLeuIleAlaTyrCysAsnLysLeuGluGluValPheGlyLeuV : 204 !||||||:!!! ! !|||.!!||||||:!!!:!|||.!.|||:!!||| !:!!: gGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValI 1699850 : ACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCA : 1699906 205 : alGlyPheSerGlnIleIleIlePheSerMetLeuIleCysLeuAsnGly : 220 !!! !.!!.!!!!.|||:!!:!!||||||:!:|||||||||||| !||| leValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGly 1699907 : TTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGA : 1699956 vulgar: Lalb_14680 114 220 . KQ414915.1 1699626 1699956 + 238 M 46 138 G 0 9 M 12 36 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699627 1699956 238 + . gene_id 6 ; sequence Lalb_14680 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1699627 1699956 . + . KQ414915.1 exonerate:protein2genome:local exon 1699627 1699956 . + . insertions 12 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699627 1699956 238 + . alignment_id 6 ; Query Lalb_14680 ; Align 1699627 115 138 ; Align 1699774 161 36 ; Align 1699813 173 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14680 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 238 Query range: 114 -> 220 Target range: 1702007 -> 1702337 115 : PheValGlnAlaLeuIleIleTyrAlaIleAspLeuCysHisHisSerValAspAs : 133 |||!.!|||!.!||| !:!:||| !:!!! !:!!|||:!! !!!! !!||||| PheAlaGlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAs 1702008 : TTTGCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAA : 1702062 134 : nIleLeuCysIleMetAsnPheHisValAlaThrGlnPheArgIleLeuGlnTyrA : 152 |:!!||||||:!:||||||.!.|||!.!|||||||||||||||||||||||||||| nLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrA 1702063 : CCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACA : 1702119 153 : rgLeuSerAsnLeuLysSerGluAsn<-><-><->ValCysAspGlyProLeuLys : 167 |||||||||||||| ..! !||| ||| !|||..! !! !!.. rgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSer 1702120 : GGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGC : 1702173 168 : ArgValProSerAla<->AlaGluAsnSerTyrAlaThrPheLysArgCysValGl : 185 !!.!! !||| ! |||||||||!!!||| !.!!||||||!.!||||||!: AlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValAr 1702174 : GCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACG : 1702230 186 : nGlnHisLysMetLeuIleAlaTyrCysAsnLysLeuGluGluValPheGlyLeuV : 204 !||||||:!!! ! !|||.!!||||||:!!!:!|||.!.|||:!!||| !:!!: gGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValI 1702231 : ACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCA : 1702287 205 : alGlyPheSerGlnIleIleIlePheSerMetLeuIleCysLeuAsnGly : 220 !!! !.!!.!!!!.|||:!!:!!||||||:!:|||||||||||| !||| leValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGly 1702288 : TTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGA : 1702337 vulgar: Lalb_14680 114 220 . KQ414915.1 1702007 1702337 + 238 M 46 138 G 0 9 M 12 36 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702008 1702337 238 + . gene_id 7 ; sequence Lalb_14680 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702008 1702337 . + . KQ414915.1 exonerate:protein2genome:local exon 1702008 1702337 . + . insertions 12 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702008 1702337 238 + . alignment_id 7 ; Query Lalb_14680 ; Align 1702008 115 138 ; Align 1702155 161 36 ; Align 1702194 173 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14680 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 217 -> 318 Target range: 1682550 -> 1683051 218 : LeuAsnGlyArgTyrThrAlaLeuPhePheLeuMetThrSerThrMetGlnLeuLe : 236 |||! !|||! ! !||| !!:!!!!:!: !.!!..!!!:|||:::.. LeuMetLysArgLeuLeuPheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePh 1682551 : TTGATGAAACGATTGTTGTTCCTAAATTACTTTCTCGGTGGAGTGATacagatatt : 1682605 237 : uMetPheThrTyrSerCysAspGlyValIleGlnGluSerLeuLysValAlaProA : 255 .:::...||| !:!|||:!!! !:!!!!::!!:!!||| ! :!!!.! !!| eLeuIleThrLeuAsnCysAsnAspIleMetGluGlnSerGlyAlaIleGlyThrA 1682606 : tttaataacccTAAATTGCAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAG : 1682662 256 : laValTyrSerSerProTrpAlaTyrLeuProMetThrIleSerGlyLysMetLeu : 273 ||:!!||||||!!! !|||! ! ! ::: ..!!!! laIleTyrSerCysAsnTrpGlu---ArgAsnValTyrAsnHisPheTyrGlnPhe 1682663 : CGATCTACAGTTGTAATTGGGAG---AGGAAtgtttataatcatttttaccAGTTC : 1682713 274 : ArgLysAspLeuValLeuValIleLeuArgSerArgIleProCysCysLeuThrAl : 292 |||||||||:!!:!!:!!|||!!::!!|||:!!!:! !||||||! !:!!:!!|| ArgLysAspMetMetIleValMetValArgAlaLysArgProCysTyrIleSerAl 1682714 : AGAAAGGATATGATGATTGTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGC : 1682770 293 : aLysGlyPhePheProIleSerLeuGluThrTyrThrLys >>>> Target In : 306 | ! !|||||||||||||||||||||:!!!:!|||||| 201 aAlaLysPhePheProIleSerLeuGluSerPheThrLys++ 1682771 : AGCGAAATTCTTTCCAATCTCCCTTGAATCGTTCACGAaggt.............. : 1682814 307 : tron 1 >>>> ValTrpThrThrAlaMetSerTyrPheThrLeuLeuArg : 318 bp |||! !:!.!!.!! ||||||!:!|||||||||||| ++ValLeuSerAlaThrAlaSerTyrTyrThrLeuLeuArg 1682815 : ...........agGTGTTAAGTGCAACAGCATCTTATTATACACTGCTGCGT : 1683051 vulgar: Lalb_14680 217 318 . KQ414915.1 1682550 1683051 + 154 M 45 135 G 1 0 M 42 126 5 0 2 I 0 197 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682551 1683051 154 + . gene_id 8 ; sequence Lalb_14680 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1682551 1682811 . + . KQ414915.1 exonerate:protein2genome:local exon 1682551 1682811 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1682812 1682813 . + . intron_id 1 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1682812 1683012 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1683011 1683012 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1683013 1683051 . + . KQ414915.1 exonerate:protein2genome:local exon 1683013 1683051 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1682551 1683051 154 + . alignment_id 8 ; Query Lalb_14680 ; Align 1682551 218 135 ; Align 1682686 264 126 ; Align 1683013 306 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14680 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 94 -> 159 Target range: 1681761 -> 1682076 95 : PheProPheAlaLeuProGluSerProLeuTyrIleSerProTyrTyrGluIleAl : 113 ||||||||| !:!! !.!.! !||| !! !:!:!!!||||||||||||||| PheProPheArgValPheAsnLeuProThrSerLeuThrProTyrTyrGluIleLe 1681762 : TTTCCATTCAGAGTGTTTAACTTGCCTACGTCTTTGACGCCgtattatgaaatatt : 1681816 114 : aPhePheValGln >>>> Target Intron 1 >>>> AlaLeuIleIleTy : 122 ||| ! :!!:!! 120 bp .!!||| !:!: uPheValIleGlu++ ++ThrLeuSerValVa 1681817 : gttcGTGATAGAGgt.........................agACATTATCTGTGGT : 1681963 123 : rAlaIleAspLeuCysHisHisSerValAspAsnIleLeuCysIleMetAsnPheH : 141 ! ! :!!||| ! !!!! !!||||||.!!|||||||||:!!!:!.!.| lHisSerGlyIleCysPheCysCysPheAspAsnPheLeuCysIleLeuSerMetH 1681964 : GCATTCGGGAATTTGTTTCTGTTGTTTCGACAATTTCCTGTGTATACTGAGCATGC : 1682020 142 : isValAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnLeuLysSerGlu : 159 |||||!.! !||||||!:!||||||||| !!!:!|||..!!..:!! !|||||| isValGlyGlyGlnPheLysIleLeuGlnAsnLysLeuGlnThrValLeuSerGlu 1682021 : ACGTCGGTGGACAGTTTAAGATTTTACAAAACAAACTCCAAACAGTATTGAGTGAG : 1682074 vulgar: Lalb_14680 94 159 . KQ414915.1 1681761 1682076 + 139 M 23 69 5 0 2 I 0 116 3 0 2 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681762 1682076 139 + . gene_id 9 ; sequence Lalb_14680 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681762 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681762 1681830 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682076 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682076 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681762 1682076 139 + . alignment_id 9 ; Query Lalb_14680 ; Align 1681762 95 69 ; Align 1681951 118 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14680 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 114 -> 156 Target range: 1711876 -> 1712002 115 : PheValGlnAlaLeuIleIleTyrAlaIleAspLeuCysHisHisSerValAspAs : 133 |||!.!|||!.!||| ! ||| !|||! !:!! !!:!! !!!! !!||||| PheAlaGlnValLeuSerAlaTyrGlnIleGlyValSerTyrGlyCysPheAspAs 1711877 : TTTGCACAGGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGGTTGCTTCGACAA : 1711931 134 : nIleLeuCysIleMetAsnPheHisValAlaThrGlnPheArgIleLeuGlnTyrA : 152 |:!!|||||||||||||||.!.|||:!!||||||||||||||||||||||||:!!| nValLeuCysIleMetAsnLeuHisLeuAlaThrGlnPheArgIleLeuGlnHisA 1711932 : CGTTCTATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAATACTGCAACATA : 1711988 153 : rgLeuSerAsnLeu : 156 ||||| !|||:!! rgLeuValAsnIle 1711989 : GACTGGTGAATATA : 1712002 vulgar: Lalb_14680 114 156 . KQ414915.1 1711876 1712002 + 126 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711877 1712002 126 + . gene_id 10 ; sequence Lalb_14680 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1711877 1712002 . + . KQ414915.1 exonerate:protein2genome:local exon 1711877 1712002 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711877 1712002 126 + . alignment_id 10 ; Query Lalb_14680 ; Align 1711877 115 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14697 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 353 Query range: 1 -> 105 Target range: 1712372 -> 1713318 2 : GlyAlaSerProTyrArgArgValValPheThrPheHisLeuIleGlyThrIleTh : 20 ||||||||| ! !!:!!:!::::::||||||||||||||| ||| !!!: GlyAlaSerValGlyLysGlnMetIlePheThrPheHisLeuAlaGlyCysMetCy 1712373 : GGTGCATCTGTGGGTAAACAGAtgattttcacgtttcacctAGCGGGATGTATGTG : 1712427 21 : rGlnLeuLeuMetPheThrTyrSerCysAspCysLeuLeuHisGluSerLeuGluI : 39 !|||||||||||||||||||||||||||||||||:!!:!! |||||||||.!.: sGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleThrGluSerLeuAsnV 1712428 : TCAATTGCTGATGTTTACGTACAGCTGCGATTGTATAATAACGGAAAGTTTGAACG : 1712484 40 : leAlaGluSerValTyrThrAlaGlnTrpProLeuLeuProMetAsnAsnSerGly : 57 !:.!!|||:!!|||||| !!.!! !||||||! !|||||||||!:!!..!!!||| alThrGluAlaValTyrAspGlyProTrpProArgLeuProMetSerThrArgGly 1712485 : TGACGGAAGCGGTGTACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGA : 1712538 58 : LysMetLeuArgSerAspMetGlnLeuValIleMetArgSerArgGluProCysSe : 76 !:!|||:!!|||!.!|||:!! !|||||||||!!:|||||||||! !||||||!! ArgMetIleArgLysAspLeuIleLeuValIleIleArgSerArgValProCysCy 1712539 : AGAATGATAAGGAAGGATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTG : 1712595 77 : rMetSerAlaGlyGlyPhePheThrValSerLeuGluThrTyrThrLys >>>> : 93 !:!!!!!||| !!|||||||||..!:!!||||||||||||||||||||| sLeuThrAlaArgGlyPhePheValIleSerLeuGluThrTyrThrLys++ 1712596 : CTTGACCGCCAGAGGATTCTTCGTAATATCTTTGGAAACGTATACGAAGgt..... : 1712648 94 : Target Intron 1 >>>> ValLeuSerThrAlaAlaSerTyrPheThrLeuL : 104 634 bp |||:!!|||||||||!.!|||||||||||||||| ++ValIleSerThrAlaValSerTyrPheThrLeuL 1712649 : ....................agGTTATAAGTACAGCAGTGTCGTACTTCACACTGT : 1713313 105 : euArg : 105 ||||| euArg 1713314 : TAAGG : 1713318 vulgar: Lalb_14697 1 105 . KQ414915.1 1712372 1713318 + 353 M 91 273 5 0 2 I 0 630 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712373 1713318 353 + . gene_id 1 ; sequence Lalb_14697 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1712373 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712373 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713318 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713318 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712373 1713318 353 + . alignment_id 1 ; Query Lalb_14697 ; Align 1712373 2 273 ; Align 1713280 93 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14697 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 323 Query range: 6 -> 105 Target range: 1708178 -> 1709234 7 : ArgArgValValPheThrPheHisLeuIleGlyThrIleThrGlnLeuLeuMetPh : 25 !:!|||:!!..!||| !|||||||||! ||| !:!: !|||||||||||||| GlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuMetPh 1708179 : CAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGATGTT : 1708233 26 : eThrTyrSerCysAspCysLeuLeuHisGluSerLeuGluIleAlaGluSerValT : 44 ||||||||||||||||||||||:!!!..|||||||||.!.:!:|||.!.:!!:!!| eThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIleT 1708234 : CACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATAT : 1708290 45 : yrThrAlaGlnTrpProLeuLeuProMetAsnAsnSerGlyLysMetLeuArgSer : 62 || !..!..!||| !! !|||||||||:!!!..||||||::!|||||||||!.! yrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLys 1708291 : ACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAA : 1708344 63 : AspMetGlnLeuValIleMetArgSerArgGluProCysSerMetSerAlaGlyGl : 81 |||:!! !!!!|||||| |||||||||! !||||||!!!:!:!!!||| !!|| AspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGl 1708345 : GATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGG : 1708401 82 : yPhePheThrValSerLeuGluThrTyrThrLys >>>> Target Intron 1 : 93 ||||||| !!|||||||||||||||||||||..! 759 bp yPhePheProValSerLeuGluThrTyrThrSer++ 1708402 : ATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt.................... : 1708439 94 : >>>> ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuArg : 105 :!!|||||||||||||||||||||||||||||||||||| ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArg 1708440 : .....agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTACGA : 1709234 vulgar: Lalb_14697 6 105 . KQ414915.1 1708178 1709234 + 323 M 86 258 5 0 2 I 0 755 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1708179 1709234 323 + . gene_id 2 ; sequence Lalb_14697 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1708179 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708179 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709234 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709234 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1708179 1709234 323 + . alignment_id 2 ; Query Lalb_14697 ; Align 1708179 7 258 ; Align 1709196 93 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14697 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 281 Query range: 2 -> 106 Target range: 1702965 -> 1703650 3 : AlaSerProTyrArgArgValValPheThrPheHisLeuIleGlyThrIleThrGl : 21 !.!!!!||| ||||||:!!..!|||..!||||||:!!:!!|||!:!:!! !|| ValThrProAlaArgArgLeuThrPheValPheHisIleValGlySerLeuCysGl 1702966 : GTGACTCCAGCGAGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCA : 1703020 22 : nLeuLeuMetPheThrTyrSerCysAspCysLeuLeuHisGluSerLeuGluIleA : 40 |||||||:!:|||||||||||||||||| !!|||:!!.!.|||||| !.!.|||! nLeuLeuLeuPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleG 1703021 : ACTATTGCTATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCG : 1703077 41 : laGluSerValTyrThrAlaGlnTrpProLeuLeuProMetAsnAsnSerGlyLys : 58 .! :!!:!!||| !!.!! ||| !! !|||||||||:!!!!.:!!|||!:! lyThrAlaIleTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArg 1703078 : GGACTGCGATATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGA : 1703131 59 : MetLeuArgSerAspMetGlnLeuValIleMetArgSerArgGluProCysSerMe : 77 ! !||||||!!!|||:!! !:!!||||||:!:|||||||||:!! !! !!!!!:! ArgLeuArgArgAspLeuThrMetValIleValArgSerArgLysSerSerCysLe 1703132 : AGGTTGAGAAGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTT : 1703188 78 : tSerAlaGlyGlyPhePheThrValSerLeuGluThrTyrThrLys >>>> Tar : 93 :!!!|||.!!||||||||| !!|||||||||||||||! !|||! ! uThrAlaSerGlyPhePheProValSerLeuGluThrCysThrThr++ 1703189 : AACTGCCAGCGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGgt........ : 1703238 94 : get Intron 1 >>>> ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuA : 105 373 bp ||||||||||||||| !||||||||||||||||||| ++ValLeuSerThrAlaMetSerTyrPheThrLeuLeuA 1703239 : .................agGTGCTCAGTACAGCGATGTCATACTTCACTTTATTAA : 1703645 106 : rgAsn : 106 ||:!! rgHis 1703646 : GGCAC : 1703650 vulgar: Lalb_14697 2 106 . KQ414915.1 1702965 1703650 + 281 M 90 270 5 0 2 I 0 369 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702966 1703650 281 + . gene_id 3 ; sequence Lalb_14697 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702966 1703235 . + . KQ414915.1 exonerate:protein2genome:local exon 1702966 1703235 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1703236 1703237 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1703236 1703608 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1703607 1703608 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1703609 1703650 . + . KQ414915.1 exonerate:protein2genome:local exon 1703609 1703650 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702966 1703650 281 + . alignment_id 3 ; Query Lalb_14697 ; Align 1702966 3 270 ; Align 1703609 93 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14697 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 269 Query range: 7 -> 105 Target range: 1689489 -> 1690076 8 : ArgValValPheThrPheHisLeuIleGlyThrIleThrGlnLeuLeuMetPheTh : 26 |||:!!:!!||| !||||||:!!||||||!:!.!!! !!..::::::...||||| ArgLeuIlePheLeuPheHisMetIleGlySerPheIleHisIleIlePhePheTh 1689490 : CGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCacataattttcttcac : 1689544 27 : rTyrSerCysAspCysLeuLeuHisGluSerLeuGluIleAlaGluSerValTyrT : 45 ||||||||||! ! !!|||:!!.!.||||||:!!!!:|||||| !:!!..!|||. rTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleAlaThrAlaThrTyrA 1689545 : gtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCAACAGCAACGTATG : 1689601 46 : hrAlaGlnTrpProLeuLeuProMetAsnAsnSerGlyLysMetLeuArgSerAsp : 63 !!!.!..!||| !!:!!||||||||||||!!. !|||||||||:!!|||.!!:!! laGlyMetTrpThrValLeuProMetAsnLysValGlyLysMetIleArgGlyAsn 1689602 : CAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAATGATACGAGGAAAT : 1689655 64 : MetGlnLeuValIleMetArgSerArgGluProCysSerMetSerAlaGlyGlyPh : 82 |||:!!|||:!!! !:!:|||||| !:!!||||||!!!!!:!!!||||||||||| MetLysLeuMetThrValArgSerLeuGlnProCysCysIleThrAlaGlyGlyPh 1689656 : ATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAACTGCTGGTGGATT : 1689712 83 : ePheThrValSerLeuGluThrTyrThrLys >>>> Target Intron 1 >> : 93 |||| !!|||||||||:!!||| !||| ! 293 bp ePheProValSerLeuLysThrAlaThrAla++ 1689713 : CTTTCCTGTCTCCTTGAAAACTGCTACCGCGgt....................... : 1689747 94 : >> ValLeuSerThrAlaAlaSerTyrPheThrLeuLeuArg : 105 :!!:!!|||:!!.!! !|||||||||||||||:!!||| ++LeuMetSerSerThrMetSerTyrPheThrLeuMetArg 1689748 : ..agCTAATGAGTTCCACAATGTCGTATTTCACGCTCATGAGA : 1690076 vulgar: Lalb_14697 7 105 . KQ414915.1 1689489 1690076 + 269 M 85 255 5 0 2 I 0 289 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1689490 1690076 269 + . gene_id 4 ; sequence Lalb_14697 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1689490 1689744 . + . KQ414915.1 exonerate:protein2genome:local exon 1689490 1689744 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1689745 1689746 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1689745 1690037 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1690036 1690037 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1690038 1690076 . + . KQ414915.1 exonerate:protein2genome:local exon 1690038 1690076 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1689490 1690076 269 + . alignment_id 4 ; Query Lalb_14697 ; Align 1689490 8 255 ; Align 1690038 93 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14697 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 255 Query range: 2 -> 105 Target range: 1695623 -> 1696251 3 : AlaSerProTyrArgArgValValPheThrPheHisLeuIleGlyThrIleThrGl : 21 :!! !!|||! |||!.!|||! !!!...!.!!:!!||| !||||||:!: !|| SerProProSerArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrLeuCysGl 1695624 : TCACCACCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTTTGTGTCA : 1695678 22 : nLeuLeuMetPheThrTyrSerCysAspCysLeuLeuHisGluSerLeuGluIleA : 40 ||||!!!||||||||||||||||||||| !!||| !...||||||:!!!!::!!: nLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGluSerMetAspValS 1695679 : ACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATGGACGTTA : 1695735 41 : laGluSerValTyrThrAlaGlnTrpProLeuLeuProMetAsnAsnSerGlyLys : 58 :!..!:!!|||!:!.!! !! !||| !! !|||||||||:!!!..!:!|||||| erArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAspArgAsnGlyLys 1695736 : GCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAATGGGAAA : 1695789 59 : MetLeuArgSerAspMetGlnLeuValIleMetArgSerArgGluProCysSerMe : 77 ! :!!|||..!..!|||! !:!!|||||||||||||||!.!..! !|||!!!:! SerValArgGlnSerMetLeuMetValIleMetArgSerAsnArgCysCysCysLe 1695790 : AGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTTGCTGCTT : 1695846 78 : tSerAlaGlyGlyPhePheThrValSerLeuGluThrTyrThrLysValLeu{Se} : 95 :!!!|||.!!||||||||| !!||||||||||||||||||||| !|||:!!{!:} uThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrGlyValIle{As} 1695847 : AACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGGTAATT{AA} : 1695900 96 : >>>> Target Intron 1 >>>> {r}ThrAlaAlaSerTyrPheThrLeu : 103 319 bp {!}|||||| !||||||||||||||| -+ ++{n}ThrAlaMetSerTyrPheThrLeu 1695901 : tt.........................ag{C}ACTGCAATGTCATACTTTACACTA : 1696243 104 : LeuArg : 105 |||||| LeuArg 1696244 : CTGAGA : 1696251 vulgar: Lalb_14697 2 105 . KQ414915.1 1695623 1696251 + 255 M 92 276 S 0 2 5 0 2 I 0 315 3 0 2 S 1 1 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1695624 1696251 255 + . gene_id 5 ; sequence Lalb_14697 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1695624 1695901 . + . KQ414915.1 exonerate:protein2genome:local exon 1695624 1695901 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695902 1695903 . + . intron_id 1 ; splice_site "TT" KQ414915.1 exonerate:protein2genome:local intron 1695902 1696220 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1696219 1696220 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1696221 1696251 . + . KQ414915.1 exonerate:protein2genome:local exon 1696221 1696251 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1695624 1696251 255 + . alignment_id 5 ; Query Lalb_14697 ; Align 1695624 3 276 ; Align 1696222 96 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14697 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 2 -> 94 Target range: 1678476 -> 1678746 3 : AlaSerProTyrArgArgValValPheThrPheHisLeuIleGlyThrIleThrGl : 21 |||||| ! !:!|||:!!|||!:!! !.!.:!!:!!:!!!.!:!!:!::!!:! AlaSerLeuLeuLysArgMetValTyrIleMetTyrMetValAlaSerValSerGl 1678477 : GCATCCTTGCTAAAACGCATGGTCTACATCATGTACATGGTTGCCTCAGTGTCAGA : 1678531 22 : nLeuLeuMetPheThrTyrSerCysAspCysLeuLeuHisGluSerLeuGluIleA : 40 !|||! !:!!.!...! !!! ||| ||| ! !.!.||| !! !|||! uLeuTrpLeuIleValArgThrValAspGluLeuThrThrHisSerLysAlaIleG 1678532 : ATTATGGTTGATAGTCCGAACCGTAGACGAACTGACCACTCATAGCAAAGCGATCG : 1678588 41 : laGluSerValTyrThrAlaGlnTrpProLeuLeuProMetAsnAsnSerGlyLys : 58 .!!!::!!:!!|||:!!:!!.!.||| !:!:::: ......... ||| lyAspAlaMetTyrSerSerAspTrpGlyValIle---PheGlyLysLeuGluLys 1678589 : GCGATGCGATGTATTCCTCGGATTGGGGAGTgatc---tttggaaaattggagaag : 1678639 59 : MetLeuArgSerAspMetGlnLeuValIleMetArgSerArgGluProCysSerMe : 77 |||::: :!! ! !:!!:!!!!:||||||! !||| !!|||||||| LysLeuLysPheAlaLeuThrThrMetValIleArgSerIleGluThrCysSerMe 1678640 : aaattaaaatttgcctTGACGACGATGGTTATCAGATCGATCGAGACGTGTTCTAT : 1678696 78 : tSerAlaGlyGlyPhePheThrValSerLeuGluThrTyrThrLysValLeu : 94 |!.!||| |||||||||.!!|||||| !||||||!:!|||..!|||:!! tLysAla---GlyPhePheAlaValSerSerGluThrPheThrSerValIle 1678697 : GAAAGCT---GGCTTCTTTGCGGTCTCCAGTGAGACGTTTACATCGGTAATT : 1678746 vulgar: Lalb_14697 2 94 . KQ414915.1 1678476 1678746 + 118 M 49 147 G 1 0 M 27 81 G 1 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1678477 1678746 118 + . gene_id 6 ; sequence Lalb_14697 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1678477 1678746 . + . KQ414915.1 exonerate:protein2genome:local exon 1678477 1678746 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local similarity 1678477 1678746 118 + . alignment_id 6 ; Query Lalb_14697 ; Align 1678477 3 147 ; Align 1678624 53 81 ; Align 1678705 81 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14689 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 496 Query range: 113 -> 323 Target range: 1711882 -> 1712648 114 : GlnIlePheCysValIleLysIleGlyValValTyrHisSerTyrAspAsnPheGl : 132 |||:!!!!.! !!.! !:!!||||||||| !||| !!!!!:!|||||| !!! GlnValLeuSerAlaTyrGlnIleGlyValSerTyrGlyCysPheAspAsnValLe 1711883 : CAGGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGGTTGCTTCGACAACGTTCT : 1711937 133 : nCysLeuMetAsnLeuHisValAlaThrGlnPheArgIleLeuHisHisArgLeuG : 151 !|||:!!||||||||||||:!!|||||||||||||||||||||!!.|||||||||! uCysIleMetAsnLeuHisLeuAlaThrGlnPheArgIleLeuGlnHisArgLeuV 1711938 : ATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAATACTGCAACATAGACTGG : 1711994 152 : luSerLeuGluSerThrTyrCysSerGlyArgArgLeuValGlnMetSerSerAsn : 169 !!:!:!!.!..!! !.!.!!!:!!:! ! !:!!! .!!..!!.. alAsnIleAsnGly------LeuLysSerLysGlnThrProGluLysGlyGluThr 1711995 : TGAATATAAACGGT------CTGAAGAGCAAACAGACACCGGAGAAAGGTGAAACG : 1712042 170 : SerLeuSerAsnAspSerAspTyrGlyAlaAspCysTyrAlaMetPheLysThrTy : 188 |||:!!! !:!!...!!!!!:!:!!.!! !:!!! !|||! !:!:||||||! !! SerIleIleAspSerThrGluPheAlaAspAsnSerTyrAspValPheLysArgCy 1712043 : TCGATTATAGATTCGACAGAATTTGCGGATAACTCTTACGACGTTTTCAAAAGATG : 1712099 189 : rIleGlnGlnHisLysAlaLeuLeuAlaTyrCysLysLysLeuAsnGluValPheA : 207 !:!!!::||||||:!!:!!|||:!!|||!:!|||:::||||||...|||:::|||! sValArgGlnHisGlnSerLeuMetAlaPheCysGluLysLeuGluGluMetPheS 1712100 : CGTTCGTCAACATCAATCTCTGATGGCTTTCTgcgagaaactcgaagaaatgTTCA : 1712156 208 : snIleTyrAlaLeuGlyGlnValIleLeuPheThrLeuIleLeuCysLeuAspAla : 225 :!!!: ! !|||||||||:!!:!!:!!|||!:!:!!.!!:!!|||||||||!.! erMetIleIleLeuGlyGlnLeuLeuValPheSerIlePheMetCysLeuAspVal 1712157 : GTATGATTATACTGGGGCAATTGTTAGTGTTCAGTATTTTTATGTGTCTCGACGTG : 1712210 226 : TyrGlnLeuLeuMet >>>> Target Intron 1 >>>> ValAsnAlaLeu : 234 ! !|||:!!|||:!! 142 bp !..!|||! ! CysGlnValLeuLeu++ ++ProGlyAlaSer 1712211 : TGCCAAGTACTTCTGgt.........................agCCAGGTGCATCT : 1712379 235 : ProSerArgLysMetThrPheAlaPheHisMetLeuGlyCysPheAlaGlnLeuLe : 253 !.!!!:!:!!||| |||...||||||::: !||||||.!...!|||||||| ValGlyLysGlnMetIlePheThrPheHisLeuAlaGlyCysMetCysGlnLeuLe 1712380 : GTGGGTAAACAGAtgattttcacgtttcacctAGCGGGATGTATGTGTCAATTGCT : 1712436 254 : uMetPheThrTyrSerCysAspLeuLeuIleAlaGluSerLeuLysValAlaGluT : 272 ||||||||||||||||||||||! !:!!|||.!!|||||||||!!.|||.!!||| uMetPheThrTyrSerCysAspCysIleIleThrGluSerLeuAsnValThrGluA 1712437 : GATGTTTACGTACAGCTGCGATTGTATAATAACGGAAAGTTTGAACGTGACGGAAG : 1712493 273 : rpAlaTyrGlyIleProTrpThrTyrPheProMetAsnLysHisGlyLysMetMet : 290 !!.!|||! ! !|||||| !! !!!.||||||!:!! !...|||!:!|||!!: laValTyrAspGlyProTrpProArgLeuProMetSerThrArgGlyArgMetIle 1712494 : CGGTGTACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGAAGAATGATA : 1712547 291 : ArgAsnAspLeuIlePheLeuLeuValArgSerSerGluProCysCysIleThrAl : 309 |||!!.|||||||||.!!:!!:!!:!!||||||!!!! !|||||||||:!:||||| ArgLysAspLeuIleLeuValIleIleArgSerArgValProCysCysLeuThrAl 1712548 : AGGAAGGATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTGCTTGACCGC : 1712604 310 : aPheLysPhePheProValSerLeuGluThrTyrThrThrVal : 323 | !|||||| !:!!||||||||||||||||||! !||| aArgGlyPhePheValIleSerLeuGluThrTyrThrLysVal 1712605 : CAGAGGATTCTTCGTAATATCTTTGGAAACGTATACGAAGGTA : 1712648 vulgar: Lalb_14689 113 323 . KQ414915.1 1711882 1712648 + 496 M 42 126 G 2 0 M 73 219 5 0 2 I 0 138 3 0 2 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711883 1712648 496 + . gene_id 1 ; sequence Lalb_14689 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1711883 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1711883 1712227 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local splice5 1712228 1712229 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712228 1712369 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1712368 1712369 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1712370 1712648 . + . KQ414915.1 exonerate:protein2genome:local exon 1712370 1712648 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711883 1712648 496 + . alignment_id 1 ; Query Lalb_14689 ; Align 1711883 114 126 ; Align 1712009 158 219 ; Align 1712370 231 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14689 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 434 Query range: 113 -> 323 Target range: 1702013 -> 1703238 114 : GlnIlePheCysValIleLysIleGlyValValTyrHisSerTyrAspAsnPheGl : 132 |||:!!.!.! !:!! ! ! :!!|||||| !||| !!!!!:!||||||.!! GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 133 : nCysLeuMetAsnLeuHisValAlaThrGlnPheArgIleLeuHisHisArgLeuG : 151 !||||||||||||||||||!.!|||||||||||||||||||||!!.:!!||||||. uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 152 : luSerLeuGluSerThrTyrCysSerGlyArgArgLeuValGlnMetSerSerAsn : 169 .!!:!|||! ..!||| ..!|||!:!! !|||.!. !:!..!::! erAsnLeuGlyAspThr---------AsnArgLysGlnValAspAspAsnGluSer 1702126 : CGAACTTGGGTGATACG---------AACAGGAAGCAAGTAGATGACAATGAATCC : 1702170 170 : SerLeuSerAsnAspSerAspTyrGlyAlaAspCysTyrAlaMetPheLysThrTy : 188 ||| !:!! ||| !!:!!.!! !:!!|||||| ! !||||||!.!! SerAlaAlaLeu---SerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCy 1702171 : AGCGCAGCTCTG---TCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTG : 1702224 189 : rIleGlnGlnHisLysAlaLeuLeuAlaTyrCysLysLysLeuAsnGluValPheA : 207 !:!!!:!||||||:!! !! !:!!.!!|||||| ! !:!|||||||||:!!|||! sValArgGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheT 1702225 : CGTACGACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCA : 1702281 208 : snIleTyrAlaLeuGlyGlnValIleLeuPheThrLeuIleLeuCysLeuAspAla : 225 ..:!! !!.!||||||!!.:!!:!!:!!|||!:!|||:!::!!||||||! !!.! hrValIleValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGly 1702282 : CGGTCATTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGA : 1702335 226 : TyrGlnLeuLeuMet >>>> Target Intron 1 >>>> ValAsnAlaLeu : 234 !:!|||:!!|||:!! 607 bp ..! !!.! ! PheGlnValLeuVal++ -+ThrProValThr 1702336 : TTCCAAGTGCTCGTGgt.........................ggACACCTGTGACT : 1702969 235 : ProSerArgLysMetThrPheAlaPheHisMetLeuGlyCysPheAlaGlnLeuLe : 253 |||:!!|||::!:!:||||||!.!||||||!!::!!||| !!.!...!|||||||| ProAlaArgArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLe 1702970 : CCAGCGAGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATT : 1703026 254 : uMetPheThrTyrSerCysAspLeuLeuIleAlaGluSerLeuLysValAlaGluT : 272 |:!:|||||||||||||||||| !||||||! !|||||| !!!.:!!!.! uLeuPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrA 1703027 : GCTATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTG : 1703083 273 : rpAlaTyrGlyIleProTrpThrTyrPheProMetAsnLysHisGlyLysMetMet : 290 ! !||| ! ||||||! !:!!.!.||||||:!!||| !|||!:!! !:!! laIleTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeu 1703084 : CGATATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTG : 1703137 291 : ArgAsnAspLeuIlePheLeuLeuValArgSerSerGluProCysCysIleThrAl : 309 |||!..||||||! !.!.:!!:!!|||||||||!!!:!! !! !!|||:!!||||| ArgArgAspLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAl 1703138 : AGAAGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGC : 1703194 310 : aPheLysPhePheProValSerLeuGluThrTyrThrThrVal : 323 | ! !||||||||||||||||||||||||! !||||||||| aSerGlyPhePheProValSerLeuGluThrCysThrThrVal 1703195 : CAGCGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGGTA : 1703238 vulgar: Lalb_14689 113 323 . KQ414915.1 1702013 1703238 + 434 M 43 129 G 3 0 M 14 42 G 1 0 M 56 168 5 0 2 I 0 603 3 0 2 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1703238 434 + . gene_id 2 ; sequence Lalb_14689 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702014 1702352 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702352 . + . insertions 0 ; deletions 4 KQ414915.1 exonerate:protein2genome:local splice5 1702353 1702354 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1702353 1702959 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702958 1702959 . + . intron_id 0 ; splice_site "GG" KQ414915.1 exonerate:protein2genome:local cds 1702960 1703238 . + . KQ414915.1 exonerate:protein2genome:local exon 1702960 1703238 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1703238 434 + . alignment_id 2 ; Query Lalb_14689 ; Align 1702014 114 129 ; Align 1702143 160 42 ; Align 1702185 175 168 ; Align 1702960 231 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14689 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 402 Query range: 179 -> 323 Target range: 1707553 -> 1708439 180 : AspCysTyrAlaMetPheLysThrTyrIleGlnGlnHisLysAlaLeuLeuAlaTy : 198 !!:|||||||||! !||||||!.!! !||||||||||||:!!||||||:!!! !|| GluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTy 1707554 : GAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATA : 1707608 199 : rCysLysLysLeuAsnGluValPheAsnIleTyrAlaLeuGlyGlnValIleLeuP : 217 ||||!!.:!!|||.!.|||||||||..!:!!!:!!.!|||!.!||||||:!:|||| rCysAsnGluLeuGlnGluValPheGlyLeuPheValLeuAlaGlnValLeuLeuP 1707609 : CTGTAACGAACTTCAAGAGGTGTTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCT : 1707665 218 : heThrLeuIleLeuCysLeuAspAlaTyrGlnLeuLeuMet{V} >>>> Targe : 231 ||!:!|||:!!:!!|||||||||!.!||| !:!!:!!:!:{ } heSerLeuLeuMetCysLeuAspGlyTyrLeuValMetVal{L}++ 1707666 : TCAGTTTGTTAATGTGCCTCGATGGATATTTGGTGATGGTT{A}gt.......... : 1707710 232 : t Intron 1 >>>> {al}AsnAlaLeuProSerArgLysMetThrPheAlaPh : 243 454 bp { !}:!!.!!! ! !! !!:!::::!:|||||| !|| -+{ys}AspThrProIleMetGlnArgLeuThrPheLeuPh 1707711 : ...............gg{AA}GATACTCCCATTATGCAGCGCCTTACTTTCTTGTT : 1708197 244 : eHisMetLeuGlyCysPheAlaGlnLeuLeuMetPheThrTyrSerCysAspLeuL : 262 ||||:!: !||||||.!...!||||||||||||||||||||||||||||||! !| eHisLeuThrGlyCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysL 1708198 : TCACCTAACGGGATGCCTGTGCCAACTGTTGATGTTCACCTACAGCTGCGATTGCC : 1708254 263 : euIleAlaGluSerLeuLysValAlaGluTrpAlaTyrGlyIleProTrpThrTyr : 280 ||||| !|||||||||!!.||||||.!. !|||! ! ! !!|||! !:!! euIleArgGluSerLeuAsnValAlaAsnAlaIleTyrAspCysSerTrpIleHis 1708255 : TGATACGAGAAAGCTTGAACGTGGCCAATGCTATATACGACTGCTCGTGGATTCAC : 1708308 281 : PheProMetAsnLysHisGlyLysMetMetArgAsnAspLeuIlePheLeuLeuVa : 299 !!.||||||:!!!:! !|||::!|||:!!|||!!.||||||! !|||:!!:!!! LeuProMetAspArgSerGlyArgMetLeuArgLysAspLeuThrPheValIleGl 1708309 : TTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGACATTCGTCATTGG : 1708365 300 : lArgSerSerGluProCysCysIleThrAlaPheLysPhePheProValSerLeuG : 318 !||||||!!!! !|||||||||:!!||||||! ! !||||||||||||||||||| yArgSerArgValProCysCysLeuThrAlaCysGlyPhePheProValSerLeuG 1708366 : AAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGG : 1708422 319 : luThrTyrThrThrVal : 323 |||||||||||:!!||| luThrTyrThrSerVal 1708423 : AAACGTACACTTCGGTA : 1708439 vulgar: Lalb_14689 179 323 . KQ414915.1 1707553 1708439 + 402 M 51 153 S 0 1 5 0 2 I 0 450 3 0 2 S 1 2 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707554 1708439 402 + . gene_id 3 ; sequence Lalb_14689 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1707554 1707707 . + . KQ414915.1 exonerate:protein2genome:local exon 1707554 1707707 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707708 1707709 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707708 1708161 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1708160 1708161 . + . intron_id 0 ; splice_site "GG" KQ414915.1 exonerate:protein2genome:local cds 1708162 1708439 . + . KQ414915.1 exonerate:protein2genome:local exon 1708162 1708439 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1707554 1708439 402 + . alignment_id 3 ; Query Lalb_14689 ; Align 1707554 180 153 ; Align 1708164 232 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14689 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 357 Query range: 174 -> 323 Target range: 1695034 -> 1695896 175 : SerAspTyrGlyAlaAspCysTyrAlaMetPheLysThrTyrIleGlnGlnHisLy : 193 !!!:!!!:! !!.!||| !!||| !...!!.|||!:!! !:!:||| ! |||:! ThrAsnPheThrValAspSerTyrLeuGlnLeuLysSerCysValGlnTyrHisGl 1695035 : ACAAATTTCACAGTCGATAGTTACTTACAATTGAAGAGTTGCGTGCAATACCATCA : 1695089 194 : sAlaLeuLeuAlaTyrCysLysLysLeuAsnGluValPheAsnIleTyrAlaLeuG : 212 !|||||| !!.!|||||||||||||||.!..!.:!!|||::::!: !!.!|||| nAlaLeuThrGlyTyrCysLysLysLeuGluAsnIlePheSerLeuLeuValLeuG 1695090 : GGCACTTACAGGCTATTGCAAAAAGTTGGAGAACATATTTTCGTTGCTTGTGCTTG : 1695146 213 : lyGlnValIleLeuPheThrLeuIleLeuCysLeuAspAlaTyrGlnLeuLeuMet : 230 ||||||||:!!!!!.!..!!:!!:!!|||||||||! !.!|||||||||!!!:!! lyGlnValLeuPheLeuAlaMetValLeuCysLeuValGlyTyrGlnLeuPheLeu 1695147 : GACAAGTGCTTTTCCTAGCCATGGTACTTTGCCTCGTGGGATATCAGCTATTTCTG : 1695200 231 : >>>> Target Intron 1 >>>> ValAsnAlaLeuProSerArgLysMet : 239 415 bp ..!:!!:!!! !|||||||||!!.:!: ++ ++ThrAspSerProProSerArgAsnVal 1695201 : gt.........................agACAGACTCACCACCTTCGAGAAACGTC : 1695642 240 : ThrPheAlaPheHisMetLeuGlyCysPheAlaGlnLeuLeuMetPheThrTyrSe : 258 !!!.!.!.!!:!!:!! !||| !!!...!||||||!!!|||||||||||||| GlyLeuValLeuAsnLeuAlaGlyThrLeuCysGlnLeuPheMetPheThrTyrSe 1695643 : GGATTGGTACTCAACCTGGCAGGCACTTTGTGTCAACTTTTTATGTTCACGTACAG : 1695699 259 : rCysAspLeuLeuIleAlaGluSerLeuLysValAlaGluTrpAlaTyrGlyIleP : 277 ||||||| !|||! ! !||||||:!! ! |||::!..! !.!!:!!.!! !| rCysAspGlyLeuThrArgGluSerMetAspValSerArgAlaValPheAlaArgP 1695700 : TTGCGATGGTTTGACAAGAGAGAGCATGGACGTTAGCAGAGCTGTATTTGCAAGAC : 1695756 278 : roTrpThrTyrPheProMetAsnLysHisGlyLysMetMetArgAsnAspLeuIle : 295 |||||.!! !!.!.||||||:!!!:!:!!||||||! :!!|||.!...!:!!:!! roTrpAlaAsnLeuProMetAspArgAsnGlyLysSerValArgGlnSerMetLeu 1695757 : CGTGGGCAAATCTGCCAATGGATAGAAATGGGAAAAGTGTGCGACAAAGCATGCTA : 1695810 296 : PheLeuLeuValArgSerSerGluProCysCysIleThrAlaPheLysPhePhePr : 314 .!.:!!:!!:!!||||||!:!..! !||||||:!!|||||| ! !|||||||| MetValIleMetArgSerAsnArgCysCysCysLeuThrAlaSerGlyPhePhePr 1695811 : ATGGTGATCATGAGGTCGAACAGGTGTTGCTGCTTAACAGCCAGCGGGTTCTTTCC : 1695867 315 : oValSerLeuGluThrTyrThrThrVal : 323 |||||||||||||||||||||| !||| oValSerLeuGluThrTyrThrGlyVal 1695868 : AGTTTCTCTCGAGACTTACACTGGGGTA : 1695896 vulgar: Lalb_14689 174 323 . KQ414915.1 1695034 1695896 + 357 M 56 168 5 0 2 I 0 411 3 0 2 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1695035 1695896 357 + . gene_id 4 ; sequence Lalb_14689 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1695035 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1695035 1695202 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695896 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695896 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1695035 1695896 357 + . alignment_id 4 ; Query Lalb_14689 ; Align 1695035 175 168 ; Align 1695618 231 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14689 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 248 Query range: 0 -> 153 Target range: 1706486 -> 1707496 1 : LeuTyrTyrMetIleAsnAlaValThrIlePheAsnSerLeuPheLysLeuIleAl : 19 :!!||| ||| !||| !:!!|||:!: !! ||||||||||||:!!:!:!. ValTyrValMetCysAsnIleLeuThrValGlyIleSerLeuPheLysIleLeuVa 1706487 : GTTTACGTAATGTGCAACATTCTAACAGTGGGCATAAGTTTGTTCAAGATCTTGGT : 1706541 20 : aIleHisProTyrLysArgLysPhePheAsnLeuIleLeuHisLeuGlnHisGluP : 38 ! ! |||...||||||......|||||| ::: !::! .!.| lSerMetArgSerLysGluLysPheLeuGluLeuIleLysTyrAlaArgThrAsnP 1706542 : CTCGATGAGGagtaaggaaaaatttttggaattaattaaatacgcCAGAACGAATT : 1706598 39 : heIleAspSerGluTyrThrGluHisGluArgArgMetLeuLeuValCysGlnArg : 56 || !!|||!!:||| !..!!!.|||!:!! !!!::!! !! !|||:!!||| heTrpHisSerAspTyrAspSerGlnGluGlnMetIleValAsnGluCysLysArg 1706599 : TCTGGCACTCGGATTATGACTCGCAGGAGCAAATGATTGTGAACGAGTGTAAACGT : 1706652 57 : ThrAlaLysIlePheIleTrpSerPheThrIleLeuValHisValThrValLeuGl : 75 :!!..!! !.!!.!!|||!! !|||!.!.!!!!!!.!:!!! !||||||! !|| SerCysThrPheLeuIleCysValPheAsnPhePheAlaAsnGlyThrValSerGl 1706653 : TCTTGTACATTCCTCATATGCGTGTTTAATTTCTTCGCTAATGGGACAGTGTCTGG : 1706709 76 : yTyrSerAlaIleProPhePhe{G} >>>> Target Intron 1 >>>> {l : 83 ||||! ! !! |||.!! ! {|} 269 bp {| yTyrIleIleArgProIleVal{G}++ +-{l 1706710 : ATACATAATCAGGCCAATTGTA{G}gt.........................aa{g : 1707003 84 : y}<->ArgSerAsnGluSerAspArgValLeuIleGlyAsnMetTrpMetSerVal : 100 |} ...|||||||||||||||:!!||||||! !|||.!.|||!!:..! !! y}IleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAspPhe 1707004 : t}attggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGACTTT : 1707056 101 : <->IleAlaPheSerProTyrTyrGluIleValTyrIleIleGln >>>> Targ : 115 ! !.!!.!.!!!|||||||||||||||:!!!:!! ||| ProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707057 : CCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt......... : 1707106 116 : et Intron 2 >>>> IlePheCysValIleLysIleGlyValValTyrHisSe : 127 276 bp :!!||| !|||!!: ! :!! !!:!! !|||! !!! ++ValPheIleValMetTyrValCysIleSerTyrLeuCy 1707107 : ................agGTTTTTATCGTAATGTACGTTTGCATAAGCTACCTTTG : 1707416 128 : rTyrAspAsnPheGlnCysLeuMetAsnLeuHisValAlaThrGlnPheArgIleL : 146 ! !|||||||||! !|||:!!!!:|||||||||..!||||||||||||||||||| sIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleL 1707417 : TATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATAT : 1707473 147 : euHisHisArgLeuGluSerLeu : 153 ||!!.:!!||||||..!!:!:!! euGlnTyrArgLeuSerAsnVal 1707474 : TGCAATACAGACTGTCGAATGTG : 1707496 vulgar: Lalb_14689 0 153 . KQ414915.1 1706486 1707496 + 248 M 82 246 S 0 1 5 0 2 I 0 265 3 0 2 S 1 2 G 0 3 M 17 51 G 0 3 M 14 42 5 0 2 I 0 272 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1706487 1707496 248 + . gene_id 5 ; sequence Lalb_14689 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1706487 1706733 . + . KQ414915.1 exonerate:protein2genome:local exon 1706487 1706733 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1706734 1706735 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1706734 1707002 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707001 1707002 . + . intron_id 0 ; splice_site "AA" KQ414915.1 exonerate:protein2genome:local cds 1707003 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707003 1707103 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707496 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707496 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1706487 1707496 248 + . alignment_id 5 ; Query Lalb_14689 ; Align 1706487 1 246 ; Align 1707008 84 51 ; Align 1707062 101 42 ; Align 1707380 115 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14689 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 238 Query range: 235 -> 323 Target range: 1689483 -> 1689747 236 : SerArgLysMetThrPheAlaPheHisMetLeuGlyCysPheAlaGlnLeuLeuMe : 254 !!!! !::::!:! !||| !|||||||||:!!||| !!||| !!..::::::.. ThrThrArgLeuIlePheLeuPheHisMetIleGlySerPheIleHisIleIlePh 1689484 : ACGACGCGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCacataatttt : 1689538 255 : tPheThrTyrSerCysAspLeuLeuIleAlaGluSerLeuLysValAlaGluTrpA : 273 .|||||||||||||||! ! !||||||! !||||||:!! ! :!!||| ! . ePheThrTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleAlaThrAlaT 1689539 : cttcacgtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCAACAGCAA : 1689595 274 : laTyrGlyIleProTrpThrTyrPheProMetAsnLysHisGlyLysMetMetArg : 291 !!|||!.! ! !|||||| !!!.|||||||||||| !|||||||||!!:||| hrTyrAlaGlyMetTrpThrValLeuProMetAsnLysValGlyLysMetIleArg 1689596 : CGTATGCAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAATGATACGA : 1689649 292 : AsnAspLeuIlePheLeuLeuValArgSerSerGluProCysCysIleThrAlaPh : 310 ...:!!:!!! !!.:!! !|||||||||! !:!!|||||||||||||||||| GlyAsnMetLysLeuMetThrValArgSerLeuGlnProCysCysIleThrAlaGl 1689650 : GGAAATATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAACTGCTGG : 1689706 311 : eLysPhePheProValSerLeuGluThrTyrThrThrVal : 323 ! !||||||||||||||||||:!!||| !|||.!!||| yGlyPhePheProValSerLeuLysThrAlaThrAlaVal 1689707 : TGGATTCTTTCCTGTCTCCTTGAAAACTGCTACCGCGGTA : 1689747 vulgar: Lalb_14689 235 323 . KQ414915.1 1689483 1689747 + 238 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1689484 1689747 238 + . gene_id 6 ; sequence Lalb_14689 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1689484 1689747 . + . KQ414915.1 exonerate:protein2genome:local exon 1689484 1689747 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1689484 1689747 238 + . alignment_id 6 ; Query Lalb_14689 ; Align 1689484 236 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14689 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 225 Query range: 113 -> 234 Target range: 1699632 -> 1699983 114 : GlnIlePheCysValIleLysIleGlyValValTyrHisSerTyrAspAsnPheGl : 132 |||:!!.!.! !:!! ! ! :!!|||||| !||| !!!!!:!||||||.!! GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1699633 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1699687 133 : nCysLeuMetAsnLeuHisValAlaThrGlnPheArgIleLeuHisHisArgLeuG : 151 !||||||||||||||||||!.!|||||||||||||||||||||!!.:!!||||||. uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1699688 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1699744 152 : luSerLeuGluSerThrTyrCysSerGlyArgArgLeuValGlnMetSerSerAsn : 169 .!!:!|||! ..!||| ..!|||!:!! !|||.!. !:!..!::! erAsnLeuGlyAspThr---------AsnArgLysGlnValAspAspAsnGluSer 1699745 : CGAACTTGGGTGATACG---------AACAGGAAGCAAGTAGATGACAATGAATCC : 1699789 170 : SerLeuSerAsnAspSerAspTyrGlyAlaAspCysTyrAlaMetPheLysThrTy : 188 ||| !:!! ||| !!:!!.!! !:!!|||||| ! !||||||!.!! SerAlaAlaLeu---SerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCy 1699790 : AGCGCAGCTCTG---TCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTG : 1699843 189 : rIleGlnGlnHisLysAlaLeuLeuAlaTyrCysLysLysLeuAsnGluValPheA : 207 !:!!!:!||||||:!! !! !:!!.!!|||||| ! !:!|||||||||:!!|||! sValArgGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheT 1699844 : CGTACGACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCA : 1699900 208 : snIleTyrAlaLeuGlyGlnValIleLeuPheThrLeuIleLeuCysLeuAspAla : 225 ..:!! !!.!||||||!!.:!!:!!:!!|||!:!|||:!::!!||||||! !!.! hrValIleValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGly 1699901 : CGGTCATTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGA : 1699954 226 : TyrGlnLeuLeuMetValAsnAlaLeu : 234 !:!|||:!!|||:!:! !||| !:!! PheGlnValLeuValGluAsnIleIle 1699955 : TTCCAAGTGCTCGTAGAAAACATCATC : 1699983 vulgar: Lalb_14689 113 234 . KQ414915.1 1699632 1699983 + 225 M 43 129 G 3 0 M 14 42 G 1 0 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699633 1699983 225 + . gene_id 7 ; sequence Lalb_14689 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1699633 1699983 . + . KQ414915.1 exonerate:protein2genome:local exon 1699633 1699983 . + . insertions 0 ; deletions 4 KQ414915.1 exonerate:protein2genome:local similarity 1699633 1699983 225 + . alignment_id 7 ; Query Lalb_14689 ; Align 1699633 114 129 ; Align 1699762 160 42 ; Align 1699804 175 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14689 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 230 -> 323 Target range: 1682538 -> 1682814 231 : ValAsnAlaLeuProSerArgLysMetThrPheAlaPheHisMetLeuGlyCysPh : 249 ||||||!.!:!! !! !!:!::!:!! !||| ! !:!!.!.|||||| ! ! ValAsnGlyValLeuMetLysArgLeuLeuPheLeuAsnTyrPheLeuGlyGlyVa 1682539 : GTGAACGGTGTATTGATGAAACGATTGTTGTTCCTAAATTACTTTCTCGGTGGAGT : 1682593 250 : eAlaGlnLeuLeuMetPheThrTyrSerCysAspLeuLeuIleAlaGluSerLeuL : 268 |||:::...:::...||| !:!|||:!! !:!!!!:! !:!!||| ! lIleGlnIlePheLeuIleThrLeuAsnCysAsnAspIleMetGluGlnSerGlyA 1682594 : GATacagatatttttaataacccTAAATTGCAACGACATAATGGAGCAAAGTGGCG : 1682650 269 : ysValAlaGluTrpAlaTyrGlyIleProTrpThrTyrPheProMetAsnLysHis : 286 :!!!.! ! ! !|||.!! ! !||| ! ||| ||| laIleGlyThrAlaIleTyrSerCysAsnTrpGluArgAsnValTyrAsn---His 1682651 : CTATAGGAACAGCGATCTACAGTTGTAATTGGGAGAGGAAtgtttataat---cat : 1682701 287 : GlyLysMetMetArgAsnAspLeuIlePheLeuLeuValArgSerSerGluProCy : 305 ..!.!.|||!!.|||:!!!!:.!!:!!:!!||||||:!!!.!...||||| PheTyrGlnPheArgLysAspMetMetIleValMetValArgAlaLysArgProCy 1682702 : ttttaccAGTTCAGAAAGGATATGATGATTGTAATGGTACGAGCGAAACGTCCTTG : 1682758 306 : sCysIleThrAlaPheLysPhePheProValSerLeuGluThrTyrThrThrVal : 323 |! !|||:!!||| ||||||||||||:!!|||||||||:!!!:!|||! ||| sTyrIleSerAlaAlaLysPhePheProIleSerLeuGluSerPheThrLysVal 1682759 : CTACATTTCAGCAGCGAAATTCTTTCCAATCTCCCTTGAATCGTTCACGAaggta : 1682814 vulgar: Lalb_14689 230 323 . KQ414915.1 1682538 1682814 + 139 M 54 162 G 1 0 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682539 1682814 139 + . gene_id 8 ; sequence Lalb_14689 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1682539 1682814 . + . KQ414915.1 exonerate:protein2genome:local exon 1682539 1682814 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1682539 1682814 139 + . alignment_id 8 ; Query Lalb_14689 ; Align 1682539 231 162 ; Align 1682701 286 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14689 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 84 -> 155 Target range: 1694364 -> 1694989 85 : SerAsnGluSerAspArgValLeuIleGlyAsnMetTrpMetSerVal<->IleAl : 102 !.!|||:!!|||!!:|||:!!||| ! !|||||||||:!:..! !! ! !!. LysAsnGlnSerGluArgMetLeuProPheAsnMetTrpValAspPheProThrGl 1694365 : AAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTGGGTTGACTTTCCTACAGG : 1694419 103 : aPheSerProTyrTyrGluIleValTyrIleIleGlnIlePheCys{V} >>>> : 118 !!!.|||||||||||||||:!!:!!!:!|||||||||:!! ! {:} yLeuSerProTyrTyrGluValLeuPheIleIleGlnValSerLys{L}++ 1694420 : ATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGGTAAGCAAA{C}gt..... : 1694470 119 : Target Intron 1 >>>> {al}IleLysIleGlyValValTyrHisSerTyr : 128 409 bp {!!} ! ! :!!|||:!! !||| !!!!:! -+{eu}TyrHisValGlyIleCysTyrMetCysPhe 1694471 : ....................cg{TG}TACCATGTCGGTATATGTTACATGTGCTTC : 1694906 129 : AspAsnPheGlnCysLeuMetAsnLeuHisValAlaThrGlnPheArgIleLeuHi : 147 ||||||.!!! !!|||:!!|||||||||||||||||||||||||||||||||!! AspAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGlnPheArgIleLeuGl 1694907 : GACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAATTTCGTATCCTTCA : 1694963 148 : sHisArgLeuGluSerLeuGluSer : 155 .:!!|||!!! !!:!|||...!:! nTyrArgPheMetAsnLeuSerAsn 1694964 : ATACCGATTCATGAATTTGAGTAAT : 1694989 vulgar: Lalb_14689 84 155 . KQ414915.1 1694364 1694989 + 123 M 16 48 G 0 3 M 17 51 S 0 1 5 0 2 I 0 405 3 0 2 S 1 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694365 1694989 123 + . gene_id 9 ; sequence Lalb_14689 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694365 1694467 . + . KQ414915.1 exonerate:protein2genome:local exon 1694365 1694467 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694468 1694469 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694468 1694876 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1694875 1694876 . + . intron_id 0 ; splice_site "CG" KQ414915.1 exonerate:protein2genome:local cds 1694877 1694989 . + . KQ414915.1 exonerate:protein2genome:local exon 1694877 1694989 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694365 1694989 123 + . alignment_id 9 ; Query Lalb_14689 ; Align 1694365 85 48 ; Align 1694416 101 51 ; Align 1694879 119 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14696 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 250 Query range: 9 -> 97 Target range: 1712384 -> 1712648 10 : AlaArgArgPheIlePheLeuPhePheLeuLeuThrSerPheValHisLeuLeuMe : 28 !.!!:!!:!...|||||| ||| ||| ! !!!!.!. !!!.|||||||| GlyLysGlnMetIlePheThrPheHisLeuAlaGlyCysMetCysGlnLeuLeuMe 1712385 : GGTAAACAGAtgattttcacgtttcacctAGCGGGATGTATGTGTCAATTGCTGAT : 1712439 29 : tPheThrTyrSerCysAspGlyValMetArgGluSerValLysValAlaAlaGlyI : 47 ||||||||||||||||||| !!:!!!!:! !||||||:!!!!.|||.!!! !!.!: tPheThrTyrSerCysAspCysIleIleThrGluSerLeuAsnValThrGluAlaV 1712440 : GTTTACGTACAGCTGCGATTGTATAATAACGGAAAGTTTGAACGTGACGGAAGCGG : 1712496 48 : leTyrAsnSerProTrpCysTyrLeuArgPheAsnLysTyrGlyArgMetLeuArg : 65 !:|||:!!.!!|||||| !|||! !.!.!:!! ! |||||||||:!!||| alTyrAspGlyProTrpProArgLeuProMetSerThrArgGlyArgMetIleArg 1712497 : TGTACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGAAGAATGATAAGG : 1712550 66 : LysAspAlaIleLeuIleIleMetArgAlaLysValProCysTyrIleThrAlaAr : 84 |||||| !||||||:!!|||!!:|||:!!!:!|||||||||! !:!:|||||||| LysAspLeuIleLeuValIleIleArgSerArgValProCysCysLeuThrAlaAr 1712551 : AAGGATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTGCTTGACCGCCAG : 1712607 85 : gGlyPhePheProIleThrLeuGluThrTyrThrLysVal : 97 |||||||||| !|||:!!||||||||||||||||||||| gGlyPhePheValIleSerLeuGluThrTyrThrLysVal 1712608 : AGGATTCTTCGTAATATCTTTGGAAACGTATACGAAGGTA : 1712648 vulgar: Lalb_14696 9 97 . KQ414915.1 1712384 1712648 + 250 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712385 1712648 250 + . gene_id 1 ; sequence Lalb_14696 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1712385 1712648 . + . KQ414915.1 exonerate:protein2genome:local exon 1712385 1712648 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712385 1712648 250 + . alignment_id 1 ; Query Lalb_14696 ; Align 1712385 10 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14696 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 249 Query range: 5 -> 105 Target range: 1708163 -> 1708463 6 : GlnThrAspSerAlaArgArgPheIlePheLeuPhePheLeuLeuThrSerPheVa : 24 .!.||| !! ! !!:!|||.!!! !||||||||| !||| ! !!!!.!. AspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCy 1708164 : GATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTG : 1708218 25 : lHisLeuLeuMetPheThrTyrSerCysAspGlyValMetArgGluSerValLysV : 43 !!!.||||||||||||||||||||||||||| !!:!!!!:|||||||||:!!!!.| sGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnV 1708219 : CCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACG : 1708275 44 : alAlaAlaGlyIleTyrAsnSerProTrpCysTyrLeuArgPheAsnLysTyrGly : 61 ||||| !!.!||||||:!!!!! !!||| !:!!|||! !.!.:!!!:!! !||| alAlaAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGly 1708276 : TGGCCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGG : 1708329 62 : ArgMetLeuArgLysAspAlaIleLeuIleIleMetArgAlaLysValProCysTy : 80 |||||||||||||||||| !! !!!!:!!||| |||:!!!:!|||||||||! ArgMetLeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCy 1708330 : CGAATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTG : 1708386 81 : rIleThrAlaArgGlyPhePheProIleThrLeuGluThrTyrThrLysValSerL : 99 !:!!|||||| !!||||||||||||:!::!!|||||||||||||||..!|||! ! sLeuThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSerValIleH 1708387 : TCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGGTAATTC : 1708443 100 : ysGluAspIleLysThrVal : 105 ! ..! .!! ! |||:!! isSerThrPheHisThrIle 1708444 : ATTCAACATTTCACACGATA : 1708463 vulgar: Lalb_14696 5 105 . KQ414915.1 1708163 1708463 + 249 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1708164 1708463 249 + . gene_id 2 ; sequence Lalb_14696 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1708164 1708463 . + . KQ414915.1 exonerate:protein2genome:local exon 1708164 1708463 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1708164 1708463 249 + . alignment_id 2 ; Query Lalb_14696 ; Align 1708164 6 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14696 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 225 Query range: 9 -> 97 Target range: 1702974 -> 1703238 10 : AlaArgArgPheIlePheLeuPhePheLeuLeuThrSerPheValHisLeuLeuMe : 28 |||||||||.!!! !|||:!!||| !:!!:!! !|||.!. !!!.||||||:! AlaArgArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLeuLe 1702975 : GCGAGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATTGCT : 1703029 29 : tPheThrTyrSerCysAspGlyValMetArgGluSerValLysValAlaAlaGlyI : 47 :|||||||||||||||||||||:!!!!:..!||||||..!!!.:!!!.!.!!!.!| uPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaI 1703030 : ATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGA : 1703086 48 : leTyrAsnSerProTrpCysTyrLeuArgPheAsnLysTyrGlyArgMetLeuArg : 65 ||||| !.!!|||||| :!!|||! !.!.:!!||| !||||||! !|||||| leTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArg 1703087 : TATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGA : 1703140 66 : LysAspAlaIleLeuIleIleMetArgAlaLysValProCysTyrIleThrAlaAr : 84 !:!||| !! !:!!:!!|||:!:|||:!!!:! ! !! !!! !:!!||||||!! ArgAspLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSe 1703141 : AGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAG : 1703197 85 : gGlyPhePheProIleThrLeuGluThrTyrThrLysVal : 97 !||||||||||||:!!:!!|||||||||! !|||! !||| rGlyPhePheProValSerLeuGluThrCysThrThrVal 1703198 : CGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGGTA : 1703238 vulgar: Lalb_14696 9 97 . KQ414915.1 1702974 1703238 + 225 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702975 1703238 225 + . gene_id 3 ; sequence Lalb_14696 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702975 1703238 . + . KQ414915.1 exonerate:protein2genome:local exon 1702975 1703238 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702975 1703238 225 + . alignment_id 3 ; Query Lalb_14696 ; Align 1702975 10 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14696 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 196 Query range: 18 -> 97 Target range: 1695659 -> 1695896 19 : LeuLeuThrSerPheValHisLeuLeuMetPheThrTyrSerCysAspGlyValMe : 37 ||| ! !!!!!!. !!!.|||!!!||||||||||||||||||||||||:!!! LeuAlaGlyThrLeuCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuTh 1695660 : CTGGCAGGCACTTTGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGAC : 1695714 38 : tArgGluSerValLysValAlaAlaGlyIleTyrAsnSerProTrpCysTyrLeuA : 56 |||||||||:!! ! |||::! !!.!:!!!:! !!!||||||... !!|||! rArgGluSerMetAspValSerArgAlaValPheAlaArgProTrpAlaAsnLeuP 1695715 : AAGAGAGAGCATGGACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGC : 1695771 57 : rgPheAsnLysTyrGlyArgMetLeuArgLysAspAlaIleLeuIleIleMetArg : 74 !.!.:!!!:! !!|||!:!! :!!|||:!!..! !:!!:!!:!:||||||||| roMetAspArgAsnGlyLysSerValArgGlnSerMetLeuMetValIleMetArg 1695772 : CAATGGATAGAAATGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGG : 1695825 75 : AlaLysValProCysTyrIleThrAlaArgGlyPhePheProIleThrLeuGluTh : 93 :!!!!. ! !|||! !:!!||||||!!!||||||||||||:!!:!!|||||||| SerAsnArgCysCysCysLeuThrAlaSerGlyPhePheProValSerLeuGluTh 1695826 : TCGAACAGGTGTTGCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGAC : 1695882 94 : rTyrThrLysVal : 97 ||||||| !||| rTyrThrGlyVal 1695883 : TTACACTGGGGTA : 1695896 vulgar: Lalb_14696 18 97 . KQ414915.1 1695659 1695896 + 196 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1695660 1695896 196 + . gene_id 4 ; sequence Lalb_14696 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1695660 1695896 . + . KQ414915.1 exonerate:protein2genome:local exon 1695660 1695896 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1695660 1695896 196 + . alignment_id 4 ; Query Lalb_14696 ; Align 1695660 19 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14696 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 168 Query range: 10 -> 98 Target range: 1682556 -> 1682817 11 : ArgArgPheIlePheLeuPhePheLeuLeuThrSerPheValHisLeuLeuMetPh : 29 !:!|||!!.:!:|||||| !!:!!!!||| !.!! ! :!:...:::...:::.. LysArgLeuLeuPheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePheLeuIl 1682557 : AAACGATTGTTGTTCCTAAATTACTTTCTCGGTGGAGTGATacagatatttttaat : 1682611 30 : eThrTyrSerCysAspGlyValMetArgGluSerValLysValAlaAlaGlyIleT : 48 .||| !:!|||:!!! !:!!|||..!:!!|||! ! :!!!.!.!!!.!|||| eThrLeuAsnCysAsnAspIleMetGluGlnSerGlyAlaIleGlyThrAlaIleT 1682612 : aacccTAAATTGCAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAGCGATCT : 1682668 49 : yrAsnSerProTrpCysTyrLeuArgPheAsnLysTyrGlyArgMetLeuArgLys : 66 ||!:!!!! !||| :::||| ::: ..!!!!|||||| yrSerCysAsnTrpGluArgAsnValTyrAsnHisPhe---TyrGlnPheArgLys 1682669 : ACAGTTGTAATTGGGAGAGGAAtgtttataatcatttt---taccAGTTCAGAAAG : 1682719 67 : AspAlaIleLeuIleIleMetArgAlaLysValProCysTyrIleThrAlaArgGl : 85 ||| !!!::!!:!!!!::!:||||||||| !||||||||||||:!!||| ! AspMetMetIleValMetValArgAlaLysArgProCysTyrIleSerAlaAlaLy 1682720 : GATATGATGATTGTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGCAGCGAA : 1682776 86 : yPhePheProIleThrLeuGluThrTyrThrLysValSer : 98 !||||||||||||:!!||||||:!!!:!|||||||||::: sPhePheProIleSerLeuGluSerPheThrLysValThr 1682777 : ATTCTTTCCAATCTCCCTTGAATCGTTCACGAaggtaaca : 1682817 vulgar: Lalb_14696 10 98 . KQ414915.1 1682556 1682817 + 168 M 50 150 G 1 0 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682557 1682817 168 + . gene_id 5 ; sequence Lalb_14696 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1682557 1682817 . + . KQ414915.1 exonerate:protein2genome:local exon 1682557 1682817 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1682557 1682817 168 + . alignment_id 5 ; Query Lalb_14696 ; Align 1682557 11 150 ; Align 1682707 62 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14685 [mRNA] [translate_table: standard] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 275 -> 386 Target range: 807257 -> 807587 276 : GlyPheLeuLeuValAsnSerLeuGlyThrGluGlyGlyProSerIleIleLeuLysP : 295 ||||||:!!!!!:!! !:!!|||.!!|||:!!! !..! !:!! !:!: !!..| GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 296 : heLeuProPheTyrValAlaAlaAsnSerGluAlaPheValLeuCysTyrThrGlyGl : 314 ||:!! .!. |||.!! ! ! !:!! !!:!:!!! !..!|||.!!|||.! heVal---LeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807316 : TCGTT---CTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 315 : uTyrLeuIleSerLysSerAspAspValArgArgAlaValCysAspMetAspTrpTyr : 333 . ||| |||::!!!!!!:!!::!! !!:!|||!.!! !||| !|||||| nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 334 : LysLeuAsnAsnArgAspMetGlnLeuLeuLeuLeuIleLeuLeuArgSerGlnLysG : 353 :::! !:!!...!.!! ::! !||||||||||||:!!! !|||.!!.!...! ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 354 : luLeuThrLeuSerAlaGlyLysPheValValLeuSerValGluAlaPheAlaThrMe : 372 ! ! !:!!!!!||||||||||||||| !:!!!:!:!! .!!||| ! !!! roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 373 : tLeuLysAlaSerAlaSerTyrIleSerIleLeuLeuAlaMet : 386 :||||||||||||!.!||||||:!:|||:!!:!! !!.!||| eLeuLysAlaSerGlySerTyrLeuSerValMetLysValMet 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: Lalb_14685 275 386 . KQ414940.1 807257 807587 + 143 M 21 63 G 1 0 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807587 143 + . gene_id 1 ; sequence Lalb_14685 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807587 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807258 807587 143 + . alignment_id 1 ; Query Lalb_14685 ; Align 807258 276 63 ; Align 807321 298 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14699 [mRNA] [translate_table: standard] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 261 -> 364 Target range: 807272 -> 807581 262 : ValThrThrThrLeuMetAspHisSerLysValMetLysTyrAlaSerHisLeuMetM : 281 |||.!! !!:! !! !|||:!! ! !!.!:!!!:! ! ! !! :!!:!!! ValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuMetValT 807273 : GTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGATGGTGA : 807330 282 : etAlaLeuPheGlnLeuLeuLeuPheCysPheProGlyAspLeuLeuIleSerGlnSe : 300 !|||.!!||||||! !|||!:!..!!:! !!|||:!! !||| |||!:!!! hrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgTh 807331 : CTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAAC : 807387 301 : rSerGlyIleSerGlnAlaIleTyrSerIleGlnTrpTyrArgValSerAlaPheLeu : 319 !..!! !|||:!!|||||| !|||..! !! ||||||||| ! !!.! ! ! rGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAla 807388 : CGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCA : 807444 320 : ArgCysGluAlaSerMetValMetLeuArgSerGlnLysProSerTyrIleThrAlaG : 339 ! ! !!: ! !:!!:!!!!:! !|||.!!.!...!|||! ! !|||||||||| AlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaG 807445 : GCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCG : 807504 340 : lyLysLeuTyrIleMetHisLeuGluAsnPheSerAlaThrLeuSerThrAlaLeuSe : 358 |||||!!! ! |||:!!||| !.!|||!.!! !! !|||!.!.!!:!! !|| lyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySe 807505 : GAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTC : 807561 359 : rTyrPheMetMetPheArg : 364 ||||.!. :!:.!.!:! rTyrLeuSerValMetLys 807562 : GTATCTGTCTGTAATGAAG : 807581 vulgar: Lalb_14699 261 364 . KQ414940.1 807272 807581 + 120 M 103 309 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807273 807581 120 + . gene_id 1 ; sequence Lalb_14699 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807273 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807273 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807273 807581 120 + . alignment_id 1 ; Query Lalb_14699 ; Align 807273 262 309 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14699 [mRNA] [translate_table: standard] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 298 -> 351 Target range: 117785 -> 117944 299 : GlnSerSerGlyIleSerGlnAlaIleTyrSerIleGlnTrpTyrArgValSerAlaP : 318 ||||||..!!.!|||.!!!::||| !|||!!!:!:! |||:!! !! ! !! !! GlnSerGluAlaIleGlyArgAlaAlaTyrThrValProTrpHisTrpTyrProArgC 117786 : CAGAGCGAAGCGATCGGTCGTGCAGCCTATACGGTGCCTTGGCATTGGTACCCTCGTT : 117843 319 : heLeuArgCysGluAlaSerMetValMetLeuArgSerGlnLysProSerTyrIleTh : 337 !|||||| !.!!!:!|||:!!|||:!!|||.!!||||||||| ! !:!:|| ysLeuArgLysProThrAsnMetLeuMetIleArgGlyGlnLysProValArgLeuTh 117844 : GCTTGCGAAAACCAACCAACATGCTGATGATCAGAGGTCAGAAACCGGTTCGTCTGAC : 117900 338 : rAlaGlyLysLeuTyrIleMetHisLeuGluAsnPheSerAla : 351 ||||||||||:!! ! !:!: !||||||!..|||:!!:!! rAlaGlyLysIleValGlyLeuSerLeuGluThrPheAlaSer 117901 : CGCCGGAAAAATCGTCGGACTCTCTCTGGAAACGTTTGCCTCT : 117944 vulgar: Lalb_14699 298 351 . KQ414940.1 117785 117944 + 106 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 117786 117944 106 + . gene_id 2 ; sequence Lalb_14699 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 117786 117944 . + . KQ414940.1 exonerate:protein2genome:local exon 117786 117944 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 117786 117944 106 + . alignment_id 2 ; Query Lalb_14699 ; Align 117786 299 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14697 [mRNA] [translate_table: standard] Target: LHQN01040768.1 Habropoda laboriosa contig40768, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 7 -> 52 Target range: 93 -> 228 8 : ArgValValPheThrPheHisLeuIleGlyThrIleThrGlnLeuLeuMetPheThrTyrSerC : 29 ||||||!.!!!..!!! ! !! !!!: ! !:!:!:!||||||! !|||||||||||||||| ArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerC 94 : CGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTT : 157 30 : ysAspCysLeuLeuHisGluSerLeuGluIleAlaGluSerValTyrThrAlaGlnTrpProLe : 50 ||||||||:!! ! |||||||||.!.||||||||||||||||||.!!!.!! !||| ! ysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAs 158 : GCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAA : 220 51 : uLeuPro : 52 !|||||| nLeuPro 221 : TTTACCA : 228 vulgar: Lalb_14697 7 52 . LHQN01040768.1 93 228 + 118 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01040768.1 exonerate:protein2genome:local gene 94 228 118 + . gene_id 1 ; sequence Lalb_14697 ; gene_orientation . LHQN01040768.1 exonerate:protein2genome:local cds 94 228 . + . LHQN01040768.1 exonerate:protein2genome:local exon 94 228 . + . insertions 0 ; deletions 0 LHQN01040768.1 exonerate:protein2genome:local similarity 94 228 118 + . alignment_id 1 ; Query Lalb_14697 ; Align 94 8 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14680 [mRNA] [translate_table: standard] Target: LHQN01040768.1 Habropoda laboriosa contig40768, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 220 -> 265 Target range: 93 -> 228 221 : ArgTyrThrAlaLeuPhePheLeuMetThrSerThrMetGlnLeuLeuMetPheThrTyrSerC : 242 ||| !.!! ! !! !|||! !||||||.!!..!! ||||||! !|||||||||||||||| ArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerC 94 : CGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTT : 157 243 : ysAspGlyValIleGlnGluSerLeuLysValAlaProAlaValTyrSerSerProTrpAlaTy : 263 ||||| !!:!!! ! !|||||||||!!.:!!||| !:!!||||||:!!.!!|||||| ! ! ysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAs 158 : GCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAA : 220 264 : rLeuPro : 265 !|||||| nLeuPro 221 : TTTACCA : 228 vulgar: Lalb_14680 220 265 . LHQN01040768.1 93 228 + 118 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01040768.1 exonerate:protein2genome:local gene 94 228 118 + . gene_id 1 ; sequence Lalb_14680 ; gene_orientation . LHQN01040768.1 exonerate:protein2genome:local cds 94 228 . + . LHQN01040768.1 exonerate:protein2genome:local exon 94 228 . + . insertions 0 ; deletions 0 LHQN01040768.1 exonerate:protein2genome:local similarity 94 228 118 + . alignment_id 1 ; Query Lalb_14680 ; Align 94 221 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14697 [mRNA] [translate_table: standard] Target: LHQN01044749.1 Habropoda laboriosa contig44749, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 7 -> 52 Target range: 136 -> 1 8 : ArgValValPheThrPheHisLeuIleGlyThrIleThrGlnLeuLeuMetPheThrTyrSerC : 29 ||||||!.!!!..!!! ! !|||!!: ! !:!:!:!||||||! !|||||||||||||||| ArgValAlaLeuAlaCysPheLeuMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerC 136 : CGCGTTGCTTTGGCGTGCTTCTTGATGACGGGCGTGAGTCAACTATGGATGTTCACGTATAGTT : 73 30 : ysAspCysLeuLeuHisGluSerLeuGluIleAlaGluSerValTyrThrAlaGlnTrpProLe : 50 ||||||||||| ! |||||||||.!.||||||||||||||||||.!!!.!! !||| ! ysAspCysLeuThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAs 72 : GCGATTGCCTAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAA : 10 51 : uLeuPro : 52 !|||||| nLeuPro 9 : TTTACCA : 2 vulgar: Lalb_14697 7 52 . LHQN01044749.1 136 1 - 126 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01044749.1 exonerate:protein2genome:local gene 2 136 126 - . gene_id 1 ; sequence Lalb_14697 ; gene_orientation . LHQN01044749.1 exonerate:protein2genome:local cds 2 136 . - . LHQN01044749.1 exonerate:protein2genome:local exon 2 136 . - . insertions 0 ; deletions 0 LHQN01044749.1 exonerate:protein2genome:local similarity 2 136 126 - . alignment_id 1 ; Query Lalb_14697 ; Align 137 8 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14689 [mRNA] [translate_table: standard] Target: LHQN01044749.1 Habropoda laboriosa contig44749, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 237 -> 282 Target range: 136 -> 1 238 : LysMetThrPheAlaPheHisMetLeuGlyCysPheAlaGlnLeuLeuMetPheThrTyrSerC : 259 ::::!:.!!!!.|||! ! !:!!:!! ! !! ! ::!||||||! !|||||||||||||||| ArgValAlaLeuAlaCysPheLeuMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerC 136 : CGCGTTGCTTTGGCGTGCTTCTTGATGACGGGCGTGAGTCAACTATGGATGTTCACGTATAGTT : 73 260 : ysAspLeuLeuIleAlaGluSerLeuLysValAlaGluTrpAlaTyrGlyIleProTrpThrTy : 280 |||||! !|||! !.!!|||||||||!!.:!!||||||! !.!|||!.! !||||||! ! ! ysAspCysLeuThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAs 72 : GCGATTGCCTAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAA : 10 281 : rPhePro : 282 !!!.||| nLeuPro 9 : TTTACCA : 2 vulgar: Lalb_14689 237 282 . LHQN01044749.1 136 1 - 101 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01044749.1 exonerate:protein2genome:local gene 2 136 101 - . gene_id 1 ; sequence Lalb_14689 ; gene_orientation . LHQN01044749.1 exonerate:protein2genome:local cds 2 136 . - . LHQN01044749.1 exonerate:protein2genome:local exon 2 136 . - . insertions 0 ; deletions 0 LHQN01044749.1 exonerate:protein2genome:local similarity 2 136 101 - . alignment_id 1 ; Query Lalb_14689 ; Align 137 238 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14680 [mRNA] [translate_table: standard] Target: LHQN01044749.1 Habropoda laboriosa contig44749, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 220 -> 265 Target range: 136 -> 1 221 : ArgTyrThrAlaLeuPhePheLeuMetThrSerThrMetGlnLeuLeuMetPheThrTyrSerC : 242 ||| !.!! ! !! !||||||||||||.!!..!! ||||||! !|||||||||||||||| ArgValAlaLeuAlaCysPheLeuMetThrGlyValSerGlnLeuTrpMetPheThrTyrSerC 136 : CGCGTTGCTTTGGCGTGCTTCTTGATGACGGGCGTGAGTCAACTATGGATGTTCACGTATAGTT : 73 243 : ysAspGlyValIleGlnGluSerLeuLysValAlaProAlaValTyrSerSerProTrpAlaTy : 263 ||||| !!:!!! ! !|||||||||!!.:!!||| !:!!||||||:!!.!!|||||| ! ! ysAspCysLeuThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIleAs 72 : GCGATTGCCTAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGATAAA : 10 264 : rLeuPro : 265 !|||||| nLeuPro 9 : TTTACCA : 2 vulgar: Lalb_14680 220 265 . LHQN01044749.1 136 1 - 122 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01044749.1 exonerate:protein2genome:local gene 2 136 122 - . gene_id 1 ; sequence Lalb_14680 ; gene_orientation . LHQN01044749.1 exonerate:protein2genome:local cds 2 136 . - . LHQN01044749.1 exonerate:protein2genome:local exon 2 136 . - . insertions 0 ; deletions 0 LHQN01044749.1 exonerate:protein2genome:local similarity 2 136 122 - . alignment_id 1 ; Query Lalb_14680 ; Align 137 221 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14680 [mRNA] [translate_table: standard] Target: LHQN01049471.1 Habropoda laboriosa contig49471, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 114 -> 152 Target range: 306 -> 420 115 : PheValGlnAlaLeuIleIleTyrAlaIleAspLeuCysHisHisSerValAspAsnIleLeuC : 136 ..!..!||||||||| !:!:||| !:!!:!!:!!|||:!!! !!!! |||||||||... LeuThrGlnAlaLeuSerValTyrGlnValAsnValCysTyrLeuCysPheAspAsnIlePheP 307 : ctCACGCAGGCTTTATCTGTGTACCAAGTTAACGTGTGTTACCTTTGCTtcgataacatttttt : 370 137 : ysIleMetAsnPheHisValAlaThrGlnPheArgIleLeuGlnTyrArg : 152 |||||| !.!.||||||||| !|||||||||||||||||||||||| heIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 371 : tcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 420 vulgar: Lalb_14680 114 152 . LHQN01049471.1 306 420 + 106 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049471.1 exonerate:protein2genome:local gene 307 420 106 + . gene_id 1 ; sequence Lalb_14680 ; gene_orientation . LHQN01049471.1 exonerate:protein2genome:local cds 307 420 . + . LHQN01049471.1 exonerate:protein2genome:local exon 307 420 . + . insertions 0 ; deletions 0 LHQN01049471.1 exonerate:protein2genome:local similarity 307 420 106 + . alignment_id 1 ; Query Lalb_14680 ; Align 307 115 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14685 [mRNA] [translate_table: standard] Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 331 -> 386 Target range: 860 -> 1194 332 : TrpTyrLysLeuAsnAsnArgAspMetGlnLeuLeuLeuLeuIleLeuLeuArgSerGlnLy : 352 |||||| ! |||..!:::! !!!:! |||||||||:!!! !:!!:!!|||||||||||||| TrpTyrAspLeuArgSerThrGluSerGlnLeuLeuIleProValIleLeuArgSerGlnLy 861 : TGGTACGATTTACGTTCAACTGAAAGCCAACTTCTAATACCTGTAATATTGAGGTCTCAAAA : 921 353 : sGluLeuThrLeuSerAlaGlyLysPheValValLeuSerValGluAlaPheAlaThr >> : 372 |! !!!|||!..::: ||||||||| ||||||:!!|||::!|||.!!.!! sGlyPheThrPheThrPheGlyLysPheSerSerLeuSerLeuGluSerPheThrAla++ 922 : GGGTTTCACATttacttttggaaaattttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.. : 983 373 : >> Target Intron 1 >>>> MetLeuLysAlaSerAlaSerTyrIleSerIleLeuL : 384 169 bp !!::!!|||!.!||||||||||||||||||:!!|||| ++IleMetLysValSerAlaSerTyrIleSerValLeuL 984 : .......................agATCATGAAAGTCTCAGCATCATATATATCAGTACTTC : 1186 385 : euAlaMet : 386 |||||:!! euAlaVal 1187 : TTGCAGTG : 1194 vulgar: Lalb_14685 331 386 . LHQN01050112.1 860 1194 + 134 M 40 120 5 0 2 I 0 165 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 861 1194 134 + . gene_id 1 ; sequence Lalb_14685 ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 861 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 861 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1194 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1194 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 861 1194 134 + . alignment_id 1 ; Query Lalb_14685 ; Align 861 332 120 ; Align 1150 372 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14717 [mRNA] [translate_table: standard] Target: KQ414583.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold34, whole genome shotgun sequence Model: protein2genome:local Raw score: 378 Query range: 0 -> 130 Target range: 619597 -> 619987 1 : MetPheSerArgAspAsnValLysTyrGluArgValValThrHisTyrThrTrpGlnG : 20 :!!|||! !|||:!!|||! !||||||||||||:!!||||||:!!||||||||||||| LeuPheIleArgAsnAsnAspLysTyrGluArgIleValThrTyrTyrThrTrpGlnG 619598 : CTGTTTATCCGCAATAACGATAAATACGAACGTATCGTAACGTATTACACTTGGCAAG : 619655 21 : lyIlePheHisHisIleThrTyrGlnPhePheGlyThrMetAlaValValSerTrpGl : 39 |||||||||||||||||||||||||| !||||||! !!!:||||||:!!! !|||.. lyIlePheHisHisIleThrTyrGlnSerPheGlyIleIleAlaValIlePheTrpSe 619656 : GAATTTTCCATCATATCACTTATCAAAGCTTCGGTATCATAGCTGTAATCTTCTGGTC : 619712 40 : yAlaLysProValIleAspLeuLeuSerLysArgSerLysGluLeuProLeuLeuGly : 58 !..!! ! !!|||:!!:!!|||:!!!.!::!! !! !:!! ||| !:!! !!.! rCysThrAlaValValAsnLeuMetLysArgThrTyrGlnLeuLeuLeuIleLysAla 619713 : ATGCACAGCAGTTGTAAATCTGATGAAACGGACGTATCAACTTTTATTGATAAAAGCA : 619769 59 : TrpTyrProTyrAsnThrThrGluSerProAlaPheGluIleThrSerLeuTyrGlnA : 78 |||||||||||||||..!||| |||||||||!::|||...||| |||:::|||! TrpTyrProTyrAsnValThrIleSerProAlaTyrGluPheThrIleLeuHisGlnV 619770 : TGGTATCCTTATAATGTAACAATTTCGCCAGCTTAtgaatttactattttacatCAAG : 619829 79 : laValAlaIleIleLeuCysCysPheAsnAsnIleAlaIleAspThrLeuValThrGl : 97 .!|||!.!:!!! !::: |||...||||||:!!||||||||||||!!!:!!||||| alValGlyValThrValAsnCysIleAsnAsnValAlaIleAspThrPheIleThrGl 619830 : TCGTGGGTGTCACTGtaaattgtattaataatGTAGCAATAGATACTTTTATAACAGG : 619886 98 : yLeuIleThrIleAlaCysCysGlnLeuThrIleLeuAsnArgAsnIleAlaSerLeu : 116 |!!!|||! !! !||||||||||||||||||:!!|||!:! !||||||:!!|||:!! yPheIleIleThrAlaCysCysGlnLeuThrLeuLeuSerTyrAsnIleSerSerIle 619887 : TTTTATAATAACTGCTTGTTGCCAATTGACACTCTTAAGTTATAACATCTCTTCGATA : 619943 117 : AsnSerGluThrArgGlnSerIleAsnValGluLysAspAsn : 130 :!!! !|||.!!..!:!!..!.!! !!.!..!! |||:!! HisTyrGluAlaGluLysGluPheValAlaArgThrAspAsp 619944 : CACTATGAAGCGGAGAAAGAATTTGTTGCTAGGACTGATGAT : 619987 vulgar: Lalb_14717 0 130 . KQ414583.1 619597 619987 + 378 M 130 390 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414583.1 exonerate:protein2genome:local gene 619598 619987 378 + . gene_id 1 ; sequence Lalb_14717 ; gene_orientation . KQ414583.1 exonerate:protein2genome:local cds 619598 619987 . + . KQ414583.1 exonerate:protein2genome:local exon 619598 619987 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local similarity 619598 619987 378 + . alignment_id 1 ; Query Lalb_14717 ; Align 619598 1 390 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14712 [mRNA] [translate_table: standard] Target: KQ414601.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold45, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 164 Query range: 125 -> 221 Target range: 1071028 -> 1070740 126 : AlaGlyGluSerAsnSerThrPheSerTyrLysLeuProSerGlnIleHisIlePh : 144 :!!|||:!!||||||..!||| !|||:!!||||||! !! ! !:!! ! ! SerGlyGlnSerAsnGluThrArgValTyrGluLeuProPheProSerTyrHisVa 1071028 : TCAGGGCAGAGTAACGAAACGAGAGTCTACGAATTGCCCTTCCCTAGTTACCATGT : 1070974 145 : ePheAspTyrGlnAsnAsnThrMetLeuTyrPheLeuLeuTyrValCysGlnIleP : 163 !.!! |||:!!:!!:!! ! !|||.!!:!!:!!|||!.!! !||| !| lLeuProTyrLysHisAspPheArgSerTyrIleIleMetTyrAlaPheGlnGlyP 1070973 : TCTCCCGTACAAGCATGACTTTCGCAGTTACATTATCATGTACGCGTTCCAGGGTC : 1070917 164 : roAlaAlaTyrSerGlyMetPheHisValAlaGlnValSerTyrValValThrMet : 181 || ! !! !|||:!! !|||:!!.!! :!!|||! :!!|||!:!:!! roLeuMetLeuValGlyLeuAsnHisIleThrThrLeuSerLeuIleValSerLeu 1070916 : CGCTTATGTTGGTGGGGTTGAACCACATAACCACCCTCAGTTTAATAGTTAGCCTG : 1070863 182 : GlyLeuHisValCysGlyLysPheSerIleLeuCysValArgIleArgAsnMetPr : 200 ! !||||||||||||||||||||||||||||||! !||||||:::|||::: ValLeuHisValCysGlyLysPheSerIleLeuSerTyrArgIleGlnAsnIleGl 1070862 : GTGCTGCATGTTTGCGGTAAATTCTCGATCTTGTCGTATCgtatacaaaatattca : 1070806 201 : oThrLysProAlaSerLeuPheArgAspHisIleLysSerLeuValAsnGlnHisL : 219 ::! !! !..! !!!.!.! ! |||:!!..!!!!|||!.!.!.|||: nIleGlnSerLysAspAsnLeuAsnArgLysIleGluAspPheValThrAspHisI 1070805 : aatccaGTCGAAAGATAATTTAAACAGGAAAATCGAGGATTTCGTGACCGATCACA : 1070749 220 : euGluLeu : 221 !!:!!||| leLysLeu 1070748 : TCAAATTG : 1070741 vulgar: Lalb_14712 125 221 . KQ414601.1 1071028 1070740 - 164 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414601.1 exonerate:protein2genome:local gene 1070741 1071028 164 - . gene_id 1 ; sequence Lalb_14712 ; gene_orientation . KQ414601.1 exonerate:protein2genome:local cds 1070741 1071028 . - . KQ414601.1 exonerate:protein2genome:local exon 1070741 1071028 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local similarity 1070741 1071028 164 - . alignment_id 1 ; Query Lalb_14712 ; Align 1071029 126 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr3 Target: KQ414615.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold33, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 340 -> 394 Target range: 2576854 -> 2577016 341 : GluSerGluLysIleGlyGluAlaSerTyrPheIleAsnTrpTyrAlaLeuProAl : 359 :!!||| !..|||.!! !|||:!!|||! |||.!.|||! ! !||||||.! LysSerPheSerIleSerThrAlaAlaTyrSerIleGlnTrpCysGlnLeuProTh 2576855 : aAGAGTTTCAGTATAAGTACAGCTGCATATTCAATACAGTGGTGTCAACTGCCAAC : 2576909 360 : aLysAsnMetSerAsnLeuIleMetMetMetValArgSerAsnArgSerSerThrL : 378 ! !! ..!.!.:!! !|||!!:!!::!!||||||.!.||||||||| !: rPheLeuLysAspGluValCysMetIleIleLeuArgSerGlnArgSerSerTyrI 2576910 : TTTTCTTAAAGACGAAGTATGCATGATTATACTACGTTCTCAAAGATCTAGCTACA : 2576966 379 : euThrAlaGlyLysIlePheAspIleSerLeuGlnGlyPheSerAspVal : 394 !!|||||||||||||||!:!! !:: |||:::...|||::: ||| leThrAlaGlyLysIleTyrValMetHisLeuGluAsnPheThrAlaVal 2576967 : TTACTGCGGGAAAGATATATGTGAtgcatttggaaaatttcaccgcggta : 2577016 vulgar: CbirOr3 340 394 . KQ414615.1 2576854 2577016 + 100 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-16 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414615.1 exonerate:protein2genome:local gene 2576855 2577016 100 + . gene_id 1 ; sequence CbirOr3 ; gene_orientation . KQ414615.1 exonerate:protein2genome:local cds 2576855 2577016 . + . KQ414615.1 exonerate:protein2genome:local exon 2576855 2577016 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local similarity 2576855 2577016 100 + . alignment_id 1 ; Query CbirOr3 ; Align 2576855 341 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14719 [mRNA] [translate_table: standard] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 401 Query range: 90 -> 270 Target range: 203816 -> 204463 91 : LeuValProLeuLeuAsnMetMetAlaAsnAspTrpGluAsnLeuLysThrAspIleG : 110 |||:!!||||||:!!||||||!!:|||.!.||||||! !!!.||||||||||||.!!| LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspPheG 203817 : CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATTTCG : 203874 111 : luArgAspValMetIleArgCysIleSerIleSerArgGlyPheMetLysPheCysTy : 129 |||||||||||||||||!:! ! ! ! !!|||!!!|||!.! !! ! !.!. !!|| luArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSerTy 203875 : AAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAGTTA : 203931 130 : rAlaThrPheGlyProIleIlePheThrMetThrValLeuProLysLeuGlyIleSer : 148 |||| !.!. ! !! !:!!.!. !|||! !|||||||||!:! !||||||!!! rAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIleThr 203932 : TGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATTACC : 203988 149 : TyrLeuMetAlaThrAsnGluSer<-><-><->AlaMetPheProLeuProThrTyrT : 165 ! ! !.!|||||||||!!! !:!:||||||:!!|||||||||| ThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrTyrT 203989 : ACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttatt : 204048 166 : yrValValAspValSerHisSerProTyrPheGluIleValTyrAlaThrGlnLeuIl : 184 ||::: |||:::|||.!.!!!|||||||||||||||:!!!:! ! !|||:!! yrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAl 204049 : atatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGC : 204105 185 : eIleIleLeuAlaThrSerPheCysTyrLeuGlyValAspAlaPhePheGlyThrVal : 203 !! !:!!:!! !! !:!!.!!||||||:!!||||||||| !|||||||||! !:!! aThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeu 204106 : CACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTG : 204162 204 : ValLeuHisIleThrAlaGlnLeuGluIleLeuHisAsnArgLeuThrSerIleGlnS : 223 :!!||||||||| !!.!|||||||||! !|||!.!!..||||||.!!!:!|||:!! IleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysH 204163 : ATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAAC : 204222 224 : erSerAspGlnPheAspHisAlaLeuMetAspValValValAspHisIleArgLeuSe : 242 !! !!!: ||||||!.! !|||:!! !..!|||! !||||||:!:||||||! isLeuGluThrPheAspArgIleLeuValThrThrValGluAspHisValArgLeuIl 204223 : ATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCGACTTAT : 204279 243 : r{Se} >>>> Target Intron 1 >>>> {r}AlaIleGluValIleGluAsn : 250 !{!!} 98 bp {!}|||:!!!!:|||||||||!:! e{Ar}++ ++{g}AlaValAspValIleGluSer 204280 : T{AG}gt.........................ag{A}GCGGTCGATGTGATCGAAAGT : 204401 251 : ThrTyrMetLeuLeuLeuLeuValLeuLeuLeuTyrPheGlyIlePheAsnCysValT : 270 ! !!:!! !:!!|||:!!|||!.!||||||!!!|||||||||! !||| !|||:!!| IlePheThrMetLeuValLeuAlaLeuLeuPheTyrPheGlyThrPheAlaCysIleT 204402 : ATATTTACGATGTTAGTCCTCGCGCTGTTATTCTATTTCGGCACATTTGCTTGCATTT : 204461 271 : yr : 270 || yr 204462 : AT : 204463 vulgar: Lalb_14719 90 270 . KQ414617.1 203816 204463 + 401 M 66 198 G 0 9 M 86 258 S 0 2 5 0 2 I 0 94 3 0 2 S 1 1 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203817 204463 401 + . gene_id 1 ; sequence Lalb_14719 ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203817 204283 . + . KQ414617.1 exonerate:protein2genome:local exon 203817 204283 . + . insertions 9 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 204284 204285 . + . intron_id 1 ; splice_site "GT" KQ414617.1 exonerate:protein2genome:local intron 204284 204381 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 204380 204381 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 204382 204463 . + . KQ414617.1 exonerate:protein2genome:local exon 204382 204463 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203817 204463 401 + . alignment_id 1 ; Query Lalb_14719 ; Align 203817 91 198 ; Align 204024 157 258 ; Align 204383 244 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14719 [mRNA] [translate_table: standard] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 207 Query range: 312 -> 383 Target range: 204763 -> 204976 313 : LeuThrThrGlnSerGluGlyIleTyrAsnAlaAlaTyrGluCysAsnTrpThrAspL : 332 |||:!!! !:!!||||||! !:!!||| !|||||||||||||||.!.||| !:!!| LeuSerIleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnL 204764 : ttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATT : 204821 333 : euLysSerAsnGluAlaArgAsnLeuIleLeuIleMetValArgAlaLysLysProPh : 351 |||||||||||:!!|||!:!!:!|||||||||||||||!.!||||||:!!!:!|||.! euLysSerAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLe 204822 : TGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCT : 204878 352 : eTyrLeuThrAlaGlyLysLeuPheProMetAsnMetLeuThrLeuCysAsnIleLeu : 370 !! !|||||||||||||||||||||||||||!..|||||||||!!!||||||:!! ! uCysLeuThrAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsnValThr 204879 : CTGTTTAACCGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTCACT : 204935 371 : LysIleSerLeuSerTyrIleSerPheLeuLeuThrLys : 383 :!!:!!! !:!! ! !:!!..! :!!:!!..!||| GlnLeuTyrIleLeuProValAspGluValIleValLys 204936 : CAGCTATATATCCTTCCTGTTGACGAAGTTATAGTAAAG : 204976 vulgar: Lalb_14719 312 383 . KQ414617.1 204763 204976 + 207 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204764 204976 207 + . gene_id 2 ; sequence Lalb_14719 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204764 204976 . + . KQ414617.1 exonerate:protein2genome:local exon 204764 204976 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204764 204976 207 + . alignment_id 2 ; Query Lalb_14719 ; Align 204764 313 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr3 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 327 -> 394 Target range: 204733 -> 204934 328 : ValPheIleLeuSerSerIleGlyAspArgLeuLysGluGluSerGluLysIleGlyG : 347 :::::! !|||||||||...... |||..! !:!!||||||:!!:!! !! LeuTyrTyrLeuSerSerPheSerIleSerLeuSerIleLysSerGluGluValTyrV 204734 : ctatACTACTTgtcttcattttcaatttctttgtCGATAAAGTCCGAAGAAGTATACG : 204791 348 : luAlaSerTyrPheIleAsnTrpTyrAlaLeuProAlaLysAsnMetSerAsnLeuIl : 366 |||:!!||| !.!.|||! !||| !:!!!!.!!. !!.!!:!||||| alAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsnLysAlaLysSerLeuIl 204792 : TTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAACAAGGCGAAAAGTTTGAT : 204848 367 : eMetMetMetValArgSerAsnArgSerSerThrLeuThrAlaGlyLysIlePheAsp : 385 |:!:!!:|||!.!|||:!!.!.||| !! ! !|||||||||||||||:::||| eLeuIleMetAlaArgAlaGlnArgProLeuCysLeuThrAlaGlyLysLeuPhePro 204849 : TTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGcaggaaaattatttcct : 204905 386 : IleSerLeuGlnGlyPheSerAspVal : 394 :::!!!:!!! ! !|||!!!:!!||| MetThrMetLeuThrPheCysAsnVal 204906 : atGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: CbirOr3 327 394 . KQ414617.1 204733 204934 + 105 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204734 204934 105 + . gene_id 1 ; sequence CbirOr3 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204734 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204734 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204734 204934 105 + . alignment_id 1 ; Query CbirOr3 ; Align 204734 328 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14729 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1139 Query range: 0 -> 371 Target range: 1058517 -> 1054220 1 : MetGlyTyrArgValThrProArgIleAlaIleAlaPheThrArgAlaSerValAl : 19 ||| !! ! !!!:!!||||||..! !||||||:!!||||||!:! !|||||||| MetArgLysSerIleThrProGluGlnAlaIleSerPheThrLysLeuSerValAl 1058517 : ATGAGGAAAAGTATAACGCCGGAACAAGCGATCTCGTTCACGAAACTGAGCGTCGC : 1058463 20 : aLeuThrArgAlaTrpProProProLeuGlnAlaSerArgThrGluLeuPhePheP : 38 |:!!||| !!:!!||||||||| !!! !! !|||!!!||||||:!!:!!!!..!!| aValThrCysSerTrpProProSerProLeuAlaThrArgThrGlnValLeuLeuP 1058462 : TGTAACTTGTTCGTGGCCACCGTCACCTCTGGCGACCAGAACTCAAGTTTTGCTCT : 1058406 39 : heAsnValSerTrpCysAlaSerPheIleSerSerIleGlyLeuLeuLeuProLeu : 56 |||||..!! !||| !!.!!:!!|||:!!|||!!!|||!.!||||||||||||||| heAsnThrLeuTrpSerThrAlaPheValSerThrIleAlaLeuLeuLeuProLeu 1058405 : TTAATACGTTGTGGAGCACAGCATTCGTTAGCACCATCGCGCTGCTTTTGCCGCTA : 1058352 57 : PheAsnAlaIleCysGluTyrTyrAspGluProIleIleLeuGlyLysAsnValSe : 75 !!.!:!!.!|||! !|||||| ! ! !!:||||||||||||||||||!..||||| LeuSerGlyIleTyrGluTyrArgLysAspProIleIleLeuGlyLysThrValSe 1058351 : TTGAGCGGAATTTACGAGTACCGTAAAGACCCCATCATTCTTGGGAAAACAGTCAG : 1058295 76 : rLeuPheAlaAlaValAlaGlnValAlaIleLysMetIleValCysArgLeuMetG : 94 |||| !:!!||||||||||||||||||||||||||||||:!!||||||!!!..!| rLeuAlaSerAlaValAlaGlnValAlaIleLysMetIleMetCysArgPheGlnG 1058294 : CCTCGCCTCGGCTGTCGCCCAGGTGGCAATCAAAATGATAATGTGCCGTTTCCAGC : 1058238 95 : lnGlnGlnPheGln >>>> Target Intron 1 >>>> ArgLeuPhePheG : 103 ||:!!||||||||| 83 bp !|||!:!|||! lnLysGlnPheGln++ ++ValLeuTyrPheA 1058237 : AGAAGCAATTCCAGgt.........................agGTATTGTACTTCG : 1058128 104 : luMetGluGluPheCysLysHisAlaThrGluLysGluAsnAlaValLeuGlnArg : 121 !:||||||.!.||||||!:!:!!||||||...||||||......|||||||||||| spMetGluAsnPheCysArgTyrAlaThrSerLysGluLysValValLeuGlnArg 1058127 : ACATGGAGAATTTCTGCAGATACGCCACCtcgaaggaaaaagttgtcCTGCAACGA : 1058074 122 : HisValAspArgTyrLysTyrValHisGlyValTyrThrLeuTrpCysPheLeuTh : 140 :!!|||||||||||||||||| !!||||||:!!|||! !||||||||||||||||| TyrValAspArgTyrLysTyrPheHisGlyIleTyrIleLeuTrpCysPheLeuTh 1058073 : TACGTGGACAGATACAAATACTTTCATGGGATTTATATATTATGGTGCTTCCTCAC : 1058017 141 : rThrIlePheValIleCysGlyProLeuTyrSerProGlnAlaPheProThrHisA : 159 |||||||||||||||| !!|||||||||||||||||||||.!!||||||||||||| rThrIlePheValIleSerGlyProLeuTyrSerProGlnThrPheProThrHisA 1058016 : GACCATCTTCGTCATAAGTGGTCCATTGTACTCACCACAGACGTTCCCCACTCATG : 1057960 160 : laLysTyrProPheProValGluGluGlnProLeuArgSerIleIlePhePheHis : 177 ||! !|||||||||! !||||||.!. !! !!!!!:: :::|||:::|||||| laIleTyrProPheGlnValGluHisThrLeuPheLysIleValIleTyrPheHis 1057959 : CGATATATCCTTTCCAAGTGGAACATACACTGTTCAagattgttatttatttccat : 1057906 178 : GlnSerLeuValGlyPheGlnAlaSerAlaGlyMetAlaIleAspAlaGlnValAl : 196 |||||||||||||||||||||||||||||||||||||||||||||.!!|||:!!|| GlnSerLeuValGlyPheGlnAlaSerAlaGlyMetAlaIleAspThrGlnIleAl 1057905 : CAGTCGTTAGTTGGTTTTCAGGCGTCCGCTGGTATGGCCATCGACACTCAAATTGC : 1057849 197 : aLeuLeuLeuArgTyrAlaThrAlaArgPheGluIleLeuAlaMetLysLeuGluA : 215 |||||||||||||||||||.!!||||||||||||:!!|||!.!! :!!:!!..!! aLeuLeuLeuArgTyrAlaAlaAlaArgPheGluLeuLeuGlyAsnGluMetArgA 1057848 : TCTTCTTCTGCGATACGCGGCTGCCAGGTTCGAGCTATTGGGAAACGAGATGCGAA : 1057792 216 : rgValGlnSerGluSerGlnLeuAsnAlaCysIleLeuGluHisAlaArgLeuLeu : 233 .!!.!.!.!!!.!.!!!:!!!!!|||||||||||| !:!!|||::!..!|||||| snAlaAsnThrHisCysGluPheAsnAlaCysIleGluLysHisSerGluLeuLeu 1057791 : ATGCAAATACTCACTGTGAATTCAATGCCTGCATAGAGAAGCACAGTGAACTTCTC : 1057738 234 : {Ar} >>>> Target Intron 2 >>>> {g}TyrThrLysSerIleTyrAr : 241 {||} 1480 bp {|}|||||||||!!!||| !: {Ar}++ ++{g}TyrThrLysThrIleArgGl 1057737 : {AG}gt.........................ag{G}TATACGAAAACAATTCGACA : 1056234 242 : gAlaValArgPheIleCysPheAlaThrAlaValThrThrAsnLeuAlaValIleP : 260 !:!!:!!!:!|||:!! !!!..!!||| !!.!||||||!.!:!!|||||||||| nSerIleLysPheLeuIleLeuThrThrIleAlaThrThrThrValAlaValIleP 1056233 : ATCTATCAAGTTCCTAATTTTGACCACTATTGCGACTACTACCGTGGCCGTAATTT : 1056177 261 : heGlySerLeuAsnLeuValThr >>>> Target Intron 3 >>>> LysG : 269 |||||||||||||||||:!!.!! 76 bp !!.| heGlySerLeuAsnLeuIleAla++ ++AsnG 1056176 : TTGGTAGCTTGAATTTAATCGCTgt.........................agAATC : 1056074 270 : lnProLeuProLeuLysIleLeuTyrAlaLeuValValValSerAlaSerGlyGlu : 287 ||||||||! !|||||| !|||||||||:!!|||||| !!|||||||||! !||| lnProLeuLeuLeuLysAlaLeuTyrAlaValValValPheSerAlaSerValGlu 1056073 : AACCATTGCTTTTGAAAGCTTTATACGCGGTCGTAGTATTCAGCGCCAGCGTGGAG : 1056020 288 : LeuPheMetTyrAlaTrpProAlaAspSerLeuIleHisGln >>>> Target : 302 |||||||||||||||||||||||||||!:!|||!!:!.!..! 63 LeuPheMetTyrAlaTrpProAlaAspAsnLeuMetArgMet++ 1056019 : CTCTTCATGTACGCTTGGCCTGCGGATAATTTGATGCGTATGgt............ : 1055973 303 : Intron 4 >>>> SerThrGlyThrAlaMetSerValTyrAsnSerThrTrpPh : 315 bp |||||| ! !||| ..!:!!||||||!!! !||||| ++SerThrLysLeuAlaAlaAspIleTyrAsnThrAspTrpPh 1055972 : .............agAGTACGAAGCTTGCGGCAGATATTTACAACACAGATTGGTT : 1055873 316 : eGluGlnAsnValLysGlnGlnLysLysValTyrPheMetIleSerArgSerGlnL : 334 ||||:!!:!!:!!!:! !|||||||||||||||!:!!!:|||..!|||||||||! eGluLysAspIleArgLeuGlnLysLysValTyrTyrIleIleGlnArgSerGlnA 1055872 : CGAAAAGGATATTAGATTGCAAAAAAAGGTATACTATATTATACAAAGGTCTCAGA : 1055816 335 : ysArgGluAlaIleGlnIleThrGlyPheLeuProGlnIleSerLeuPheTyrTyr : 352 :!! !|||||||||!:!|||!.!|||.!.:!!|||:!!:!!|||||| |||||| rgLeuGluAlaIleArgIleAsnGlyIleValProLysLeuSerLeuProTyrTyr 1055815 : GGCTCGAAGCTATTCGAATTAATGGCATAGTTCCAAAACTATCCCTGCCATACTAT : 1055762 353 : AlaLys >>>> Target Intron 5 >>>> PheLeuTyrThrAlaPheSer : 361 |||! ! 1482 bp !:!||||||! !:!!!!.||| AlaMet++ ++TyrLeuTyrLysSerLeuSer 1055761 : GCAATGgt.........................agTATCTATACAAGTCTTTATCT : 1054253 362 : TyrPheThrAlaLeuArgValIleValGlu : 371 ||||||||||||||||||:!!!!:|||||| TyrPheThrAlaLeuArgIleMetValGlu 1054252 : TACTTCACTGCGTTGCGTATCATGGTCGAA : 1054221 vulgar: Lalb_14729 0 371 . KQ414618.1 1058517 1054220 - 1139 M 98 294 5 0 2 I 0 79 3 0 2 M 135 405 S 0 2 5 0 2 I 0 1476 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 34 102 5 0 2 I 0 59 3 0 2 M 53 159 5 0 2 I 0 1478 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1054221 1058517 1139 - . gene_id 1 ; sequence Lalb_14729 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1058224 1058517 . - . KQ414618.1 exonerate:protein2genome:local exon 1058224 1058517 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1058222 1058223 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1058141 1058223 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1058141 1058142 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1057734 1058140 . - . KQ414618.1 exonerate:protein2genome:local exon 1057734 1058140 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1057732 1057733 . - . intron_id 2 ; splice_site "gt" KQ414618.1 exonerate:protein2genome:local intron 1056254 1057733 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1056254 1056255 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1056154 1056253 . - . KQ414618.1 exonerate:protein2genome:local exon 1056154 1056253 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1056152 1056153 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1056078 1056153 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1056078 1056079 . - . intron_id 2 ; splice_site "ag" KQ414618.1 exonerate:protein2genome:local cds 1055976 1056077 . - . KQ414618.1 exonerate:protein2genome:local exon 1055976 1056077 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1055974 1055975 . - . intron_id 4 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1055913 1055975 . - . intron_id 4 KQ414618.1 exonerate:protein2genome:local splice3 1055913 1055914 . - . intron_id 3 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1055754 1055912 . - . KQ414618.1 exonerate:protein2genome:local exon 1055754 1055912 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1055752 1055753 . - . intron_id 5 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1054272 1055753 . - . intron_id 5 KQ414618.1 exonerate:protein2genome:local splice3 1054272 1054273 . - . intron_id 4 ; splice_site "aG" KQ414618.1 exonerate:protein2genome:local cds 1054221 1054271 . - . KQ414618.1 exonerate:protein2genome:local exon 1054221 1054271 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1054221 1058517 1139 - . alignment_id 1 ; Query Lalb_14729 ; Align 1058518 1 294 ; Align 1058141 99 405 ; Align 1056253 235 99 ; Align 1056078 268 102 ; Align 1055913 302 159 ; Align 1054272 355 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14729 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 270 Query range: 96 -> 234 Target range: 1029179 -> 1028765 97 : PheGlnArgLeuPhePheGluMetGluGluPheCysLysHisAlaThrGluLysGl : 115 !!.|||!:!|||.!! ||||||:!! ! !|||:!! |||! ! ! ! || LeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGl 1029179 : TTGCAGAAACTAATCGAAGAAATGAAGATTTGCTGTGAAACAGCGAAACCATACGA : 1029125 116 : uAsnAlaValLeuGlnArgHisValAspArgTyrLysTyrValHisGlyValTyrT : 134 |!..! !|||!!!||||||:!!||||||!:!|||...! !!:!!! !..!! !: uArgAspValPheGlnArgTyrValAspLysTyrSerLeuPheTyrValThrCysS 1029124 : AAGAGACGTCTTTCAACGATACGTCGATAAATACTCTTTATTTTACGTAACATGTT : 1029068 135 : hrLeuTrpCysPheLeuThrThrIlePheValIleCysGlyProLeuTyrSerPro : 152 !!! !|||! !!:!||||||.!!:!!.!!:!!:!! ||| !! ! !! ! !! erSerTrpPheTyrLeuThrAlaValIleMetValLeuGlySerArgIleIleSer 1029067 : CGTCGTGGTTTTACTTAACAGCAGTTATTATGGTTCTGGGAAGTCGGATTATATCT : 1029014 153 : GlnAlaPheProThrHisAlaLysTyrProPheProValGluGluGlnProLeuAr : 171 .!. !!|||||||||:!!||| !|||||||||||||||.!. :!!|||||||| AspProPheProThrAsnAlaValTyrProPheProValAsnPheGluProLeuAr 1029013 : GATCCTTTTCCAACCAACGCCGTATATCCATTCCCTGTTAACTTTGAACCCTTGAG : 1028957 172 : gSerIleIlePhePheHisGlnSerLeuValGlyPheGlnAlaSerAlaGlyMetA : 190 |||||||||||||.!.|||||||||!!!||||||.!.|||..!:!!||| !! : gSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisThrS 1028956 : AAGTATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACACTA : 1028900 191 : laIleAspAlaGlnValAlaLeuLeuLeuArgTyrAlaThrAlaArgPheGluIle : 208 :!!!::!!!.!! !..!||||||||||||! !!:!|||.!!||||||||||||||| erMetAsnValLeuThrAlaLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIle 1028899 : GTATGAATGTGCTAACTGCATTGTTATTACTATTTGCTGCAGCTCGTTTCGAGATA : 1028846 209 : LeuAlaMetLysLeuGluArgValGlnSerGluSerGlnLeuAsnAlaCysIleLe : 227 ||| !|||:!!|||..!!.!|||.....! ..! !|||! ! !|||!!: LeuMetMetGluLeuArgAsnValSerAspIleGluThrLeuIleLysCysMetLy 1028845 : CTGATGATGGAGCTGAGGAATGTCAGTGACATTGAAACACTGATTAAATGTATGAA : 1028789 228 : uGluHisAlaArgLeuLeuArg : 234 !:!!:!!:!!! !:!!! !||| sLysTyrSerIleValArgArg 1028788 : AAAGTATTCGATCGTACGGAGG : 1028766 vulgar: Lalb_14729 96 234 . KQ414618.1 1029179 1028765 - 270 M 138 414 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028766 1029179 270 - . gene_id 2 ; sequence Lalb_14729 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028766 1029179 . - . KQ414618.1 exonerate:protein2genome:local exon 1028766 1029179 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028766 1029179 270 - . alignment_id 2 ; Query Lalb_14729 ; Align 1029180 97 414 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14729 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 251 Query range: 96 -> 234 Target range: 1038346 -> 1037932 97 : PheGlnArgLeuPhePheGluMetGluGluPheCysLysHisAlaThrGluLysGl : 115 !!.|||!:!|||.!! ||||||:!! ! !|||:!! |||! ! ! ! || LeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGl 1038346 : TTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGA : 1038292 116 : uAsnAlaValLeuGlnArgHisValAspArgTyrLysTyrValHisGlyValTyrT : 134 |!..! !|||!!!||||||:!!|||:!!!:!:!:... ::: ... !: uArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysS 1038291 : AAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTT : 1038235 135 : hrLeuTrpCysPheLeuThrThrIlePheValIleCysGlyProLeuTyrSerPro : 152 !!! !|||! !!:!||||||.!!|||.!!:!!:!! !||| !||| !! ! !! erSerTrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSer 1038234 : CGTCATGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCC : 1038181 153 : GlnAlaPheProThrHisAlaLysTyrProPheProValGluGluGlnProLeuAr : 171 .!. !!|||||||||:!!||| !|||||||||||||||.!. :!!|||||||| AspProPheProThrAsnAlaValTyrProPheProValAsnPheGluProLeuAr 1038180 : GATCCTTTTCCAACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAG : 1038124 172 : gSerIleIlePhePheHisGlnSerLeuValGlyPheGlnAlaSerAlaGlyMetA : 190 |||||||||||||.!.|||||||||!!!||||||.!.|||..!:!!||| ! : gSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisAlaS 1038123 : AAGCATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTA : 1038067 191 : laIleAspAlaGlnValAlaLeuLeuLeuArgTyrAlaThrAlaArgPheGluIle : 208 :!!!::!!!.!! !||||||||||||! !!:!.!!|||||||||||||||||| erMetAsnValLeuSerAlaLeuLeuLeuLeuPheThrThrAlaArgPheGluIle 1038066 : GTATGAATGTGCTTTCTGCACTGTTATTGCTATTCACTACAGCtcgtttcgaaata : 1038013 209 : LeuAlaMetLysLeuGluArgValGlnSerGluSerGlnLeuAsnAlaCysIleLe : 227 ||| !! !:!!|||..!!.!|||.!...! ..! !|||! ! ! !!!!: LeuMetThrGluLeuArgAsnValAsnAspIleGluThrLeuIleLysSerMetLy 1038012 : ttgaTGACGGAGTTGAGGAATGTCAATGATATCGAAACACTGATTAAGAGTATGAA : 1037956 228 : uGluHisAlaArgLeuLeuArg : 234 !:!!:!!:!!! !:!!! !||| sLysTyrSerThrValArgArg 1037955 : AAAGTATTCGACTGTGCGGAGG : 1037933 vulgar: Lalb_14729 96 234 . KQ414618.1 1038346 1037932 - 251 M 138 414 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037933 1038346 251 - . gene_id 3 ; sequence Lalb_14729 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1037933 1038346 . - . KQ414618.1 exonerate:protein2genome:local exon 1037933 1038346 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037933 1038346 251 - . alignment_id 3 ; Query Lalb_14729 ; Align 1038347 97 414 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14729 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 187 Query range: 95 -> 240 Target range: 1062775 -> 1062340 96 : GlnPheGlnArgLeuPhePheGluMetGluGluPheCysLysHisAlaThrGluLy : 114 !::.!!||| !||| ! :!!:!::!!! !||| ||| |||!.!:!!!! ArgIleGlnValLeuValGlyLysValLysAlaPheValLysValAlaAsnLysAs 1062775 : CGTATTCAGGTGTTGGTAGGAAAAGTAAAGGCGTTTGTAAAAGTGGCAAACAAGAA : 1062721 115 : sGluAsnAlaValLeuGlnArgHisValAspArgTyrLysTyrValHisGlyValT : 133 .|||! ! !:!!:!!||| !!:!!||||||||||||||| !! !|||..! nGluIleLysIleIleGlnGlyTyrValAspArgTyrLysArgPhePheGlyThrI 1062720 : CGAGATTAAGATAATACAAGGATACGTGGATCGATATAAACGATTTTTCGGAACAA : 1062664 134 : yrThrLeuTrpCysPheLeuThrThrIlePheValIleCysGlyProLeuTyrSer : 151 .!!:!! ! ! ! ! :!!||| !||| !!! !! !.!||||||!:!||| leAlaMetGlyTyrValMetThrGlyIleThrPheSerLeuAlaProLeuPheSer 1062663 : TAGCAATGGGATACGTAATGACTGGAATCACGTTCAGTTTGGCGCCTCTGTTTTCC : 1062610 152 : ProGlnAlaPheProThrHisAlaLysTyrProPheProValGluGluGlnProLe : 170 !|||! !!!.|||.!! !!!.! ! !|||||| !!:!!:!! !! ! !:! ValGlnGluLeuProAlaAspGlyTrpIleProPheSerIleLysProLeuGlyVa 1062609 : GTACAAGAATTGCCAGCAGACGGATGGATCCCGTTTTCCATTAAACCACTGGGAGT : 1062553 171 : uArgSerIleIlePhePheHisGlnSerLeuValGlyPheGlnAlaSerAlaGlyM : 189 ! !!!!:!!:!!!:!||| ||| !! ! ! !.!!|||.!!:!! ! !!! lTyrCysLeuValTyrPheValGlnValTyrCysIleLeuGlnThrAlaPheCysI 1062552 : ATATTGCCTCGTATACTTTGTGCAGGTTTACTGCATTCTCCAAACAGCGTTCTGCA : 1062496 190 : etAlaIleAspAlaGlnValAlaLeuLeuLeuArgTyrAlaThrAlaArgPheGlu : 207 !:::!:!:||| !..!:!!|||||||||:!!!!!!:!:!!.!!|||!:!!!.!!: leSerValAspPheMetIleAlaLeuLeuIleSerPheSerAlaAlaLysLeuAsp 1062495 : TTAGCGTGGATTTCATGATCGCTCTTCTAATCAGCTTCTCCGCGGCTAAATTAGAC : 1062442 208 : IleLeuAlaMetLysLeuGluArgValGlnSerGluSerGlnLeuAsnAlaCysIl : 226 ||||||!.!|||||||||..!!:!!.!.!..!!.!...! !||| ::!|||:! IleLeuGlyMetLysLeuArgLysAlaAsnGlyHisAspValLeuValSerCysVa 1062441 : ATACTGGGGATGAAACTGCGAAAAGCGAATGGCCACGACGTGCTGGTAAGCTGTGT : 1062385 227 : eLeuGluHisAlaArgLeuLeuArgTyrThrLysSerIleTyr : 240 ! !|||||| !..!:!!:!! !!!! !:!!|||:!!!:! lLysGluHisGlnGluIleIleGly***AspGlnSerValPhe 1062384 : CAAAGAACACCAAGAGATAATAGGGTAAGATCAATCTGTTTTC : 1062341 vulgar: Lalb_14729 95 240 . KQ414618.1 1062775 1062340 - 187 M 145 435 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1062341 1062775 187 - . gene_id 4 ; sequence Lalb_14729 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1062341 1062775 . - . KQ414618.1 exonerate:protein2genome:local exon 1062341 1062775 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1062341 1062775 187 - . alignment_id 4 ; Query Lalb_14729 ; Align 1062776 96 435 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14724 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 445 Query range: 0 -> 236 Target range: 1030017 -> 1028765 1 : MetPheAspLysAlaThrProGluLysAlaValAsnPheAlaArgLeuAlaValCy : 19 |||!!. ! ! !!!:!||||||!:!|||:!!::!.!!!.!!:!:!! !..!.. MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1030017 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1029963 20 : sLeuAsnMetTyrTrpProLeuGluProThrThrAsnLysPheTrpArgValLeuT : 38 !!!!!.! ! !||||||||| !!|||.!!!.!|||! ! ! !:!!! !! aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1029962 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1029906 39 : yrAsnValLeuLysAlaLeuSerLeuIleCysThrIleAlaValPheLeuProLeu : 56 :!!!.:!!|||!:!:!!!!! !|||:!! !.!!:!!!.!:!!|||||||||||| heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1029905 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1029852 57 : LeuTyrSerValTyrLeuAsnLeuLysArgAsnAspTyrThrHisPheSerLysAl : 75 ||||||:!! |||:!!:!! ! ||||||||| ! !:!! !!:!!||||| LeuTyrAla------LeuHisValHisArgAsnAspAlaGluAsnValAlaLysAl 1029851 : TTATATGCT------CTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGC : 1029801 76 : aAlaCysMetThrLeuAlaSerIleHisValMetGlyGlnAlaAlaValSerPheP : 94 |||||||:!!||||||||| :::...:::... |||..! !|||!!!.!! aAlaCysLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleG 1029800 : TGCTTGCCTGACGCTTGCCctcgtgcaaatatttttccagacTTTCGTTTGCATCG : 1029744 95 : heGlnHisAspGlnLeuGln >>>> Target Intron 1 >>>> TyrLeuV : 103 !|||:!!|||!!.!!!||| 550 bp ! |||: lyGlnTyrAspHisPheGln++ ++LysLeuI 1029743 : GCCAATACGATCATTTTCAGgt.........................agAAACTAA : 1029167 104 : alGluGluMetValAspTyrPheArgAsnMetLysProTyrGluArgGluValTyr : 121 !!||||||||| ! !! !! !..!!.. !|||||||||||||||!!:|||!:! leGluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPhe 1029166 : TCGAAGAAATGAAGATTTGCTGTGAAACAGCGAAACCATACGAAAGAGACGTCTTT : 1029113 122 : GlnArgTyrMetArgLysTyrSerProPheTyrGlyValSerThrGlyTrpAsnAl : 140 |||||||||:!: !||||||||| !||||||! !..!!!!:!!..!||| ! GlnArgTyrValAspLysTyrSerLeuPheTyrValThrCysSerSerTrpPheTy 1029112 : CAACGATACGTCGATAAATACTCTTTATTTTACGTAACATGTTCGTCGTGGTTTTA : 1029056 141 : aLeuSerAlaPhePheValMetIleGlyProPheValThrGlyGlnProPheProM : 159 !|||!!!||| !!.!!:!!:!::!:||| ! :!!! !..!.!.|||||||||! rLeuThrAlaValIleMetValLeuGlySerArgIleIleSerAspProPheProT 1029055 : CTTAACAGCAGTTATTATGGTTCTGGGAAGTCGGATTATATCTGATCCTTTTCCAA : 1028999 160 : etAlaAlaGluTyrProPheProValAspHisGluIleValArgSerThrIleTyr : 177 !|||! !|||||||||||||||:!! !||| !:!!||||||! !|||!:! hrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePhe 1028998 : CCAACGCCGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGTATCATTTTT : 1028945 178 : LeuGlnHisSerTyrValCysValGlnCysMetCysThrLeuAsnSerAsnMetMe : 196 :!!!!.!!.|||!:!||| !!:!!|||||| ... ! !!:!! !|||:!!:! MetHisGlnSerPheValGlyIleGlnCysAlaAlaHisThrSerMetAsnValLe 1028944 : ATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACACTAGTATGAATGTGCT : 1028888 197 : tAlaAlaIleLeuIleLeuPheAlaAlaGlyArgPheGluIleLeuMetIleAspL : 215 :.!!|||:!:|||:!!||||||||||||!.!||||||||||||||||||!!:!!:| uThrAlaLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuMetMetGluL 1028887 : AACTGCATTGTTATTACTATTTGCTGCAGCTCGTTTCGAGATACTGATGATGGAGC : 1028831 216 : euArgAlaAlaSerSerIleAspAspLeuArgAsnCysIleGluGlnCysTyrVal : 233 ||||| !!.!|||..!|||!!: |||! !!!.|||!!::!!:!!! !! :!! euArgAsnValSerAspIleGluThrLeuIleLysCysMetLysLysTyrSerIle 1028830 : TGAGGAATGTCAGTGACATTGAAACACTGATTAAATGTATGAAAAAGTATTCGATC : 1028777 234 : IleArgLys : 236 :!!|||!:! ValArgArg 1028776 : GTACGGAGG : 1028766 vulgar: Lalb_14724 0 236 . KQ414618.1 1030017 1028765 - 445 M 59 177 G 2 0 M 39 117 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028766 1030017 445 - . gene_id 1 ; sequence Lalb_14724 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1029724 1030017 . - . KQ414618.1 exonerate:protein2genome:local exon 1029724 1030017 . - . insertions 0 ; deletions 2 KQ414618.1 exonerate:protein2genome:local splice5 1029722 1029723 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1029174 1029723 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1029174 1029175 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028766 1029173 . - . KQ414618.1 exonerate:protein2genome:local exon 1028766 1029173 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028766 1030017 445 - . alignment_id 1 ; Query Lalb_14724 ; Align 1030018 1 177 ; Align 1029841 62 117 ; Align 1029174 101 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14724 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 418 Query range: 0 -> 236 Target range: 1039184 -> 1037932 1 : MetPheAspLysAlaThrProGluLysAlaValAsnPheAlaArgLeuAlaValCy : 19 |||!!. ! ! !!!:!||||||!:!|||:!!::!.!!!.!!:!:!! !..!.. MetLeuLysTyrProSerProGluArgAlaIleSerLeuValGlnValIleThrAl 1039184 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGC : 1039130 20 : sLeuAsnMetTyrTrpProLeuGluProThrThrAsnLysPheTrpArgValLeuT : 38 !!!!!.! ! !||||||||| !!|||.!!!.!|||! ! ! !:!!! !! aPheThrCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnP 1039129 : TTTTACCTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAAT : 1039073 39 : yrAsnValLeuLysAlaLeuSerLeuIleCysThrIleAlaValPheLeuProLeu : 56 :!!!.:!!|||!:!:!!!!! !|||:!! !.!!:!!!.!:!!|||||||||||| heLysIleLeuArgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeu 1039072 : TTAAGATTCTGAGATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTG : 1039019 57 : LeuTyrSerValTyrLeuAsnLeuLysArgAsnAspTyrThrHisPheSerLysAl : 75 ||||||:!! |||:!!:!! ! ||||||||| ! !:!! !!:!!||||| LeuTyrAla------LeuHisValHisArgAsnAspAlaGluAsnValAlaLysAl 1039018 : TTATATGCT------CTGCACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGC : 1038968 76 : aAlaCysMetThrLeuAlaSerIleHisValMetGlyGlnAlaAlaValSerPheP : 94 |||||||:!!||||||||| :::...:::... |||... |||!!!.!! aAlaCysLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCysIleG 1038967 : TGCTTGCCTGACGCTTGCTctcgtgcaaatatttttccaaactttcgttTGCATCG : 1038911 95 : heGlnHisAspGlnLeuGln >>>> Target Intron 1 >>>> TyrLeuV : 103 !|||:!!|||!!.!!!||| 550 bp ! |||: lyGlnTyrAspHisPheGln++ ++LysLeuI 1038910 : GTCAATACGATCATTTTCAGgt.........................agAAACTAA : 1038334 104 : alGluGluMetValAspTyrPheArgAsnMetLysProTyrGluArgGluValTyr : 121 !!||||||||| ! !! !! !..!!.. |||||||||||||||!!:|||!:! leGluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAspValPhe 1038333 : TCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGACGTCTTC : 1038280 122 : GlnArgTyrMetArgLysTyrSerProPheTyrGlyValSerThrGlyTrpAsnAl : 140 |||||||||:!:!.!|||:!:||| |||||| ... !!:!!..!||| ! GlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheTy 1038279 : CAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTTA : 1038223 141 : aLeuSerAlaPhePheValMetIleGlyProPheValThrGlyGlnProPheProM : 159 !|||!!!|||.!..!!:!!:!::!!||| !.!.:!!! !..!.!.|||||||||! rLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPheProT 1038222 : CTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAA : 1038166 160 : etAlaAlaGluTyrProPheProValAspHisGluIleValArgSerThrIleTyr : 177 !|||! !|||||||||||||||:!! !||| !:!!||||||! !|||!:! hrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePhe 1038165 : CCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTT : 1038112 178 : LeuGlnHisSerTyrValCysValGlnCysMetCysThrLeuAsnSerAsnMetMe : 196 :!!!!.!!.|||!:!||| !!:!!|||||| ... ! !!:!! !|||:!!:! MetHisGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLe 1038111 : ATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCT : 1038055 197 : tAlaAlaIleLeuIleLeuPheAlaAlaGlyArgPheGluIleLeuMetIleAspL : 215 ::!!|||:!:|||:!:||||||.!!.!!!..||||||||||||||||||! !!:| uSerAlaLeuLeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluL 1038054 : TTCTGCACTGTTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGT : 1037998 216 : euArgAlaAlaSerSerIleAspAspLeuArgAsnCysIleGluGlnCysTyrVal : 233 ||||| !!.!!:!..!|||!!: |||! !!!. !!!!::!!:!!! !! ..! euArgAsnValAsnAspIleGluThrLeuIleLysSerMetLysLysTyrSerThr 1037997 : TGAGGAATGTCAATGATATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACT : 1037944 234 : IleArgLys : 236 :!:|||!:! ValArgArg 1037943 : GTGCGGAGG : 1037933 vulgar: Lalb_14724 0 236 . KQ414618.1 1039184 1037932 - 418 M 59 177 G 2 0 M 39 117 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037933 1039184 418 - . gene_id 2 ; sequence Lalb_14724 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1038891 1039184 . - . KQ414618.1 exonerate:protein2genome:local exon 1038891 1039184 . - . insertions 0 ; deletions 2 KQ414618.1 exonerate:protein2genome:local splice5 1038889 1038890 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1038341 1038890 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1038341 1038342 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1037933 1038340 . - . KQ414618.1 exonerate:protein2genome:local exon 1037933 1038340 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037933 1039184 418 - . alignment_id 2 ; Query Lalb_14724 ; Align 1039185 1 177 ; Align 1039008 62 117 ; Align 1038341 101 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14724 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 350 Query range: 0 -> 236 Target range: 1053857 -> 1052542 1 : MetPheAspLysAlaThrProGluLysAlaValAsnPheAlaArgLeuAlaValCy : 19 |||!!. ! :!! !||||||||||||!.!:!!:!!.!! ! !!!!!::!|||.. MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : sLeuAsnMetTyrTrpProLeuGluProThrThrAsnLysPheTrpArgValLeuT : 38 !||| :!:! !|||||||||... !:!!.!!!:!||| ! !||| : aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 39 : yrAsnValLeuLysAlaLeuSerLeuIleCysThrIleAlaValPheLeuProLeu : 56 ::...:::|||::: ||| !||| !!.!!:!! !:!!.!!||||||||| heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 57 : LeuTyrSerValTyrLeuAsnLeuLysArgAsnAspTyrThrHisPheSerLysAl : 75 |||||||||..!||||||:!!!!! :!!||| !! ! !.!!|||:!!:: LeuTyrSerThrTyrLeuHisPhe------AspAspValIleValLeuSerGlnSe 1053691 : TTGTACTCAACTTACTTGCACTTC------GACGATGTCATTGTTCTTTCTCAGAG : 1053641 76 : aAlaCysMetThrLeuAlaSerIleHisValMetGlyGlnAlaAlaValSerPheP : 94 ! !|||:!!:!!:!!!.! !.!!!!.:!!!!: !|||.!!!.!:!!!!!||| rIleCysLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCysPheT 1053640 : CATCTGCTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGTTTCA : 1053584 95 : heGlnHisAspGlnLeuGln >>>> Target Intron 1 >>>> TyrLeuV : 103 !.!.:!!|||! |||||| 613 bp :!!: hrAsnTyrAspLeuLeuGln++ ++ArgIleI 1053583 : CCAACTACGACCTTCTGCAGgt.........................agCGAATAA : 1052944 104 : alGluGluMetValAspTyrPheArgAsnMetLysProTyrGluArgGluValTyr : 121 !! !||||||:!! ||| !!!:!.!. !:!!! !!:!|||||||||:!! ! leThrGluMetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLeu 1052943 : TTACAGAAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCTC : 1052890 122 : GlnArgTyrMetArgLysTyrSerProPheTyrGlyValSerThrGlyTrpAsnAl : 140 !!.!.!|||!!:!:!|||! !!.!! !|||||||||! !||| ! !|||!.. HisAsnTyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrTy 1052889 : CACAACTATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACATA : 1052833 141 : aLeuSerAlaPhePheValMetIleGlyProPheValThrGlyGlnProPheProM : 159 !|||!!!||| !! ! !!:!::!!|||||| !!||| ! !.!.|||||||||! rLeuCysAlaThrCysPheValLeuGlyProValValLeuProAsnProPheProS 1052832 : CCTCTGTGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCA : 1052776 160 : etAlaAlaGluTyrProPheProValAspHisGluIleValArgSerThrIleTyr : 177 ::!|||||||||||||||! !|||:!!!.! ! !:!!!.!:!!! !:!!||| erSerAlaGluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyr 1052775 : GCAGTGCAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTAC : 1052722 178 : LeuGlnHisSerTyrValCysValGlnCysMetCysThrLeuAsnSerAsnMetMe : 196 |||!!.!!.|||!:!:!! !! !!|||! !! ... !:!! ! !!:!!!:.! LeuHisGlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePh 1052721 : CTGCACCAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTT : 1052665 197 : tAlaAlaIleLeuIleLeuPheAlaAlaGlyArgPheGluIleLeuMetIleAspL : 215 .!.!|||:!!|||:!!! !.!!.!!|||!.!||||||.!. !|||! :!:!!:: eGlyAlaLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluV 1052664 : CGGAGCTCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGG : 1052608 216 : euArgAlaAlaSerSerIleAspAspLeuArgAsnCysIleGluGlnCysTyrVal : 233 !!!:! !::!||||||||| !! |||! !! !|||:!!:!!:!! :!! alGlnGlnSerSerSerIleHisMetLeuIleIleCysValLysLysGlnLeuLeu 1052607 : TTCAACAAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCTACTA : 1052554 234 : IleArgLys : 236 :!:|||!:! LeuArgArg 1052553 : CTGAGGAGG : 1052543 vulgar: Lalb_14724 0 236 . KQ414618.1 1053857 1052542 - 350 M 64 192 G 2 0 M 34 102 5 0 2 I 0 609 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1052543 1053857 350 - . gene_id 3 ; sequence Lalb_14724 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1053564 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053564 1053857 . - . insertions 0 ; deletions 2 KQ414618.1 exonerate:protein2genome:local splice5 1053562 1053563 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052951 1053563 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052951 1052952 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052543 1052950 . - . KQ414618.1 exonerate:protein2genome:local exon 1052543 1052950 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1052543 1053857 350 - . alignment_id 3 ; Query Lalb_14724 ; Align 1053858 1 192 ; Align 1053666 67 102 ; Align 1052951 101 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14724 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 288 Query range: 270 -> 374 Target range: 1036027 -> 1035480 271 : ArgGlnProIleMetValLysValGlnPheIlePheLeuAlaGlySerAlaLeuIl : 289 !:!||||||:!: |||||||||||||||:!! !:!!::!|||!!!||||||:! LysGlnProLeuAlaValLysValGlnPheLeuThrMetSerGlyThrAlaLeuLe 1036027 : AAACAACCGTTGGCTGTTAAAGTTCAATTTCTTACTATGAGTGGAACCGCGTTGCT : 1035973 290 : eGluValTyrMetCysAlaTrpProValAspAlaLeuMetGluLeu >>>> Tar : 305 :||||||!:!||||||:!! |||!.!||| !|||!!:!!::!! uGluValPheMetCysSerLeuProAlaAspHisLeuIleAspMet++ 1035972 : GGAAGTGTTTATGTGTTCACTACCAGCTGACCATTTGATAGATATGgt........ : 1035923 306 : get Intron 1 >>>> SerGluThrAlaValArgAspValTyrGluAlaLysT : 317 159 bp ||||||!.! !:!!!:!! :!!||||||:!!|||| ++SerGluAsnIleMetGlnGlyIleTyrGluSerLysT 1035922 : .................agAGCGAGAACATAATGCAAGGAATATATGAATCGAAAT : 1035730 318 : rpTyrAspGlnAsnValArgValGlnLysThrValLeuGlnMetLeuIleProGln : 335 |||||!!:!:!::::::::::::||||||::!..!:!!! ||||||! !|||||| rpTyrGluArgSerLeuLysIleGlnLysSerThrValLeuMetLeuThrProGln 1035729 : GGTACGAACGAtctctaaaaattcaaaagtcTACAGTCCTCATGTTGACTCCTCAA : 1035676 336 : LysProIleValIleSerLeuArgPheValMetAlaAlaLeuSerLeuAsnTyrTy : 354 ...|||:!:..!:!!!.!:!!!:!! !:!!!!: !!!..||||||||||||:::|| SerProValThrValLysIleLysCysLeuIleProValLeuSerLeuAsnPheTy 1035675 : TCTCCGGTGACAGTAAAAATCAAGTGCCTCATTCCAGttctttctttgaattttta : 1035619 355 : rCysSer >>>> Target Intron 2 >>>> TyrAlaSerAsnAlaPheSe : 363 ||||||| 76 bp |||!.!||||||!.!||||| rCysSer++ ++TyrValSerAsnValPheSe 1035618 : ctgCTCGgt.........................agTACGTCTCAAATGTGTTCTC : 1035516 364 : rLeuPheThrAlaLeuArgValValMetGluAsn : 374 |||||||||||||||||||:!!!.!||| !||| rLeuPheThrAlaLeuArgIleAlaMetIleAsn 1035515 : TTTATTTACCGCTTTAAGAATAGCCATGATAAAT : 1035481 vulgar: Lalb_14724 270 374 . KQ414618.1 1036027 1035480 - 288 M 34 102 5 0 2 I 0 155 3 0 2 M 52 156 5 0 2 I 0 72 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1035481 1036027 288 - . gene_id 4 ; sequence Lalb_14724 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1035926 1036027 . - . KQ414618.1 exonerate:protein2genome:local exon 1035926 1036027 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1035924 1035925 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1035767 1035925 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1035767 1035768 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1035611 1035766 . - . KQ414618.1 exonerate:protein2genome:local exon 1035611 1035766 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1035609 1035610 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1035535 1035610 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1035535 1035536 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1035481 1035534 . - . KQ414618.1 exonerate:protein2genome:local exon 1035481 1035534 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1035481 1036027 288 - . alignment_id 4 ; Query Lalb_14724 ; Align 1036028 271 102 ; Align 1035767 305 156 ; Align 1035535 357 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14724 [mRNA] [translate_table: standard] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 145 Query range: 304 -> 356 Target range: 1028204 -> 1028048 305 : SerGluThrAlaValArgAspValTyrGluAlaLysTrpTyrAspGlnAsnValAr : 323 ||||||!.! !:!!!:!! :!!||||||:!!|||||||||!!:!:!:::::::: SerGluAsnIleMetGlnGlyIleTyrGluSerLysTrpTyrGluArgSerLeuLy 1028204 : AGCGAGAACATAATGCAAGGAATATATGAATCAAAATGGTACGAACGAtctctaaa : 1028150 324 : gValGlnLysThrValLeuGlnMetLeuIleProGlnLysProIleValIleSerL : 342 ::::||||||::!..!:!!! ||||||! !||||||...|||:!:..!:!!!.!: sIleGlnLysSerThrValLeuMetLeuThrProGlnSerProValThrValLysI 1028149 : aattcaaaagtcTACAGTCCTCATGTTGACTCCTCAATCTCCGGTGACAGTAAAAA : 1028093 343 : euArgPheValMetAlaAlaLeuSerLeuAsnTyrTyrCysSer : 356 !!!:!! !:!!!!: !!!..||||||||||||:::||||||||| leLysCysLeuIleProValLeuSerLeuAsnPheTyrCysSer 1028092 : TCAAGTGCCTCATTCCAGttctttctttgaatttttactgCTCG : 1028049 vulgar: Lalb_14724 304 356 . KQ414618.1 1028204 1028048 - 145 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028049 1028204 145 - . gene_id 5 ; sequence Lalb_14724 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028049 1028204 . - . KQ414618.1 exonerate:protein2genome:local exon 1028049 1028204 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028049 1028204 145 - . alignment_id 5 ; Query Lalb_14724 ; Align 1028205 305 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr3 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 339 -> 398 Target range: 3178740 -> 3178917 340 : GluGluSerGluLysIleGlyGluAlaSerTyrPheIleAsnTrpTyrAlaLeuPr : 358 ...:!!|||||||||:!!|||||||||! !||| !!::!!||| |||||||| SerGlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuPr 3178741 : TCCCAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCC : 3178795 359 : oAlaLysAsnMetSerAsnLeuIleMetMetMetValArgSerAsnArgSerSerT : 377 |.!! ! ! ! !!.!:!!|||:!::!!!!:|||!.!||||||!!.||| !! !! oThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValL 3178796 : CACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTA : 3178852 378 : hrLeuThrAlaGlyLysIlePheAspIleSerLeuGlnGlyPheSerAspValCys : 395 !:!!|||::!||| ! :!! !!! !:!!||| !:!!..!|||! !..!||| !! ysMetThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerValSer 3178853 : AAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTTAGT : 3178906 396 : LysThrSer : 398 !:!! !||| ArgIleSer 3178907 : AGAATTTCC : 3178917 vulgar: CbirOr3 339 398 . KQ414646.1 3178740 3178917 + 114 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178741 3178917 114 + . gene_id 1 ; sequence CbirOr3 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178741 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178741 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178741 3178917 114 + . alignment_id 1 ; Query CbirOr3 ; Align 3178741 340 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr2 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 334 -> 393 Target range: 3178740 -> 3178917 335 : GluGluSerGluLysValGlyGluSerSerTyrPheIleGluTrpTyrAsnLeuPr : 353 ...:!!||||||||||||||||||:!!! !||| !!:!!:||| ||||| SerGlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuPr 3178741 : TCCCAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCC : 3178795 354 : oThrAsnIleValGlyTyrLeuIleLeuMetIleIleArgSerGlyArgProSerT : 372 ||||:!!||| ! ! !!|||:!:|||!!:!!: |||||| !|||||| !! oThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValL 3178796 : CACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTA : 3178852 373 : hrLeuThrAlaAlaLysIlePheAspLeuSerLeuGlnGlyPheCysGluValCys : 390 !:!!|||::!!.! ! :!! !!! !|||||| !:!!..!||| ...||| !! ysMetThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerValSer 3178853 : AAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTTAGT : 3178906 391 : LysThrSer : 393 !:!! !||| ArgIleSer 3178907 : AGAATTTCC : 3178917 vulgar: CbirOr2 334 393 . KQ414646.1 3178740 3178917 + 112 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178741 3178917 112 + . gene_id 1 ; sequence CbirOr2 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178741 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178741 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178741 3178917 112 + . alignment_id 1 ; Query CbirOr2 ; Align 3178741 335 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14720 [mRNA] [translate_table: standard] Target: KQ414667.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold102, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1420 Query range: 0 -> 376 Target range: 806042 -> 801445 1 : MetAsnPheGlnIleTyrGlyGlyGluGlnTyrAspArgLeuIleLysProIleMetT : 20 |||||| !!:! |||..!..!:!!:!!||||||..!||||||!:!||||||||| MetAsnAlaArgProTyrAsnAsnLysGluTyrAspGluLeuIleArgProIleMetL 806042 : ATGAATGCTCGACCGTACAATAACAAGGAATACGATGAACTGATCAGACCCATCATGT : 805985 21 : hrThrGlyArgIleIleSerIleTrpProLeuProAlaAspSerSerArgSerThrIl : 39 !|||!.!!:!||||||||||||||||||||| !!! !:!!|||:!!! !.!!.!!|| euThrAlaLysIleIleSerIleTrpProLeuAlaGluAsnSerAlaThrGlyAlaIl 805984 : TAACCGCAAAGATCATTTCCATCTGGCCGTTGGCAGAGAATAGCGCTACGGGGGCTAT : 805928 40 : eLeuPheArgArgPheHisLeuPheCysMetPhePheLeu >>>> Target Intr : 53 ||||||||||||||||||||||.!!||||||||||||||| 684 bp eLeuPheArgArgPheHisLeuLeuCysMetPhePheLeu++ 805927 : ATTGTTCAGGAGATTCCACTTGCTCTGCATGTTTTTTCTGgt................ : 805884 54 : on 1 >>>> ValValValMetSerIleAlaLeuThrAlaAspValIleTyrAsnLe : 68 |||||||||||||||||||||:!!|||||||||||||||:!!|||:! ++ValValValMetSerIleAlaValThrAlaAspValIleHisAsnIl 805883 : .........agGTGGTGGTGATGTCGATCGCGGTGACGGCCGACGTGATCCACAATAT : 805157 69 : uSerAsnLeuAspGluAlaThrGluCysAlaLeuIleCysThrAlaPheTyrLeuCys : 87 !..!:!!||||||||||||||||||||||||||||||||||||||||||||||||||| eAspAspLeuAspGluAlaThrGluCysAlaLeuIleCysThrAlaPheTyrLeuCys 805156 : CGACGATTTGGACGAAGCGACCGAGTGTGCGTTGATTTGCACAGCATTTTACCTTTGC : 805100 88 : ValValArgLeuLeuValTyrThrAlaHisGlnLysAspMetLeuTyrValValAsnT : 107 |||||||||:!!:!!||||||.!! !||||||||||||||||||||||||||||||| ValValArgMetValValTyrAlaIleHisGlnLysAspMetLeuTyrValValAsnT 805099 : GTTGTTCGCATGGTGGTGTACGCGATTCATCAGAAAGATATGCTTTACGTAGTGAACA : 805040 108 : hrMetArgGluAspTrpThrValSerSerTyrGluAspArgMetIleLeuSerGluLy : 126 |||||||| |||||||||! !|||||| ! |||||||||:!:||||||:!!||||| hrMetArgIleAspTrpThrGluSerSerLysGluAspArgValIleLeuAlaGluLy 805039 : CAATGAGGATCGATTGGACTGAATCTTCAAAAGAGGATCGTGTTATTCTAGCGGAGAA : 804983 127 : sThrMetPheAlaTyrArgLeuAlaLysPhePheIleSerThrValAlaValThrIle : 145 |||||||||||||!:!||||||||||||!:!||||||||||||||||||!.!|||||| sThrMetPheAlaPheArgLeuAlaLysTyrPheIleSerThrValAlaAlaThrIle 804982 : AACGATGTTCGCCTTTCGTCTTGCCAAGTACTTTATCAGTACCGTGGCTGCAACTATC : 804926 146 : ValIlePheMetCysValProLeuLeuGlu >>>> Target Intron 2 >>>> : 156 |||!!:|||||||||:!!|||:!!|||||| 728 bp ValMetPheMetCysIleProIleLeuGlu++ + 804925 : GTGATGTTCATGTGCATTCCGATTCTAGAGgt.........................a : 804167 157 : IleTyrValAlaGlyAsnAspLysIleLeuProPheArgGlyTyrPheTyrValAsn : 174 ||||||||| !|||!!.||||||:!:|||||||||||||||||||||!:!:!!||| +IleTyrValLeuGlyLysAspLysValLeuProPheArgGlyTyrPhePheLeuAsn 804166 : gATTTACGTGCTTGGTAAGGACAAAGTGCTCCCATTCCGAGGTTACTTCTTCCTCAAT : 804111 175 : HisThrValSerProIlePheGluCysPheTyrValPheAsnValThrAlaGlyGlyP : 194 !!.||||||||||||||||||||||||!!.|||:!!|||||||||||||||||||||| GlnThrValSerProIlePheGluCysLeuTyrLeuPheAsnValThrAlaGlyGlyP 804110 : CAAACCGTGTCGCCGATCTTCGAGTGCTTGTACCTGTTCAACGTGACCGCTGGTGGAT : 804051 195 : heGlyGlySerMetIleAlaGlyAlaThrSerPheAsnLeuValValIleMetHisGl : 213 ||||||||!!!|||||||||.!!..!|||||||||||||||||||||||||||||||| heGlyGlyThrMetIleAlaSerCysThrSerPheAsnLeuValValIleMetHisGl 804050 : TCGGCGGTACGATGATCGCCAGTTGCACCAGTTTCAATCTGGTGGTAATAATGCACGG : 803994 214 : ySerAlaLysPheAlaValLeuArgLysArgLeuGluAlaIleSerGlyAspAspPro : 232 |||||||||||||||||||||||||!:!||||||||||||:!!|||||| ! |||||| ySerAlaLysPheAlaValLeuArgArgArgLeuGluAlaLeuSerGlyLysAspPro 803993 : CTCGGCCAAGTTTGCTGTTCTACGGAGAAGATTGGAGGCTCTCAGCGGCAAGGATCCT : 803937 233 : AspSerSerSerGluMetThr{Gl} >>>> Target Intron 3 >>>> {u}P : 241 :!!|||!!!!!!! ||| !{||} 726 bp {|}! AsnSerThrThrValMetGly{Gl}-+ ++{u}T 803936 : AATTCTACTACTGTTATGGGG{GA}tt.........................ag{G}T : 803184 242 : heAlaAspAlaLeuGluArgIleIleAsnValLeuAlaLeuGlyGlnPheValIleSe : 260 :!|||||||||||||||||||||||||||||||||||||||||||||||||||||||| yrAlaAspAlaLeuGluArgIleIleAsnValLeuAlaLeuGlyGlnPheValIleSe 803183 : ACGCAGATGCACTGGAAAGGATCATAAATGTTCTGGCTTTGGGACAATTCGTCATTAG : 803127 261 : rThrGlyLeuIleCysPheAlaGlyPheGlnIleThrSer >>>> Target Intr : 274 |||||||||||||||||||||||||||||||||||||||| 61 bp rThrGlyLeuIleCysPheAlaGlyPheGlnIleThrSer++ 803126 : CACAGGTCTGATCTGCTTCGCGGGATTCCAGATCACCTCGgt................ : 803083 275 : on 4 >>>> MetMetGluAspMetGlyArgLeuMetLysTyrSerThrPheLeuAs : 289 ||||||||||||! |||||||||||||||||||||||||||||||| ++MetMetGluAspLysGlyArgLeuMetLysTyrSerThrPheLeuAs 803082 : .........agATGATGGAGGATAAAGGACGGCTGATGAAATATTCCACCTTCTTGAA : 802979 290 : nSerAlaIleLeuGluLeuPheMetPheSerPheSerGlyAspGlyLeuIleGluGlu : 308 ||||||||||||||||||||||||||||||||||||||||:!!|||||||||!!:||| nSerAlaIleLeuGluLeuPheMetPheSerPheSerGlyAsnGlyLeuIleAspGlu 802978 : CTCCGCCATTCTCGAGCTGTTCATGTTCAGCTTCAGCGGAAACGGCCTGATAGACGAG : 802922 309 : >>>> Target Intron 5 >>>> SerGluAsnValGlyLeuSerAlaTyrSe : 318 1119 bp |||!!: |||||| !|||||||||.! ++ ++SerAspAlaValGlyGluSerAlaTyrGl 802921 : gt.........................agAGCGACGCGGTAGGCGAGTCAGCTTATGG : 801773 319 : rCysGluTrpIleLysSerHisTyrCysProAsnLeuMetIleMetMetMetArgSer : 337 ! !!! !|||||| |||!.!!:!! !! !!:!|||..!|||||||||||||||||| ySerGlyTrpIleGlySerArgPheSerGlnSerLeuGlnIleMetMetMetArgSer 801772 : CAGCGGATGGATCGGTAGTCGTTTCTCTCAGAGTCTTCAGATCATGATGATGCGCTCG : 801716 338 : MetValProSerGlnIleThrAlaAlaLysPheTyrSerMetSerLeuGlnSerPheS : 357 ! !:!!|||!!!:!!|||||||||||||||||||||||||||||||||:!!||||||| ArgIleProCysLysIleThrAlaAlaLysPheTyrSerMetSerLeuGluSerPheS 801715 : AGGATACCATGCAAGATAACCGCCGCTAAATTCTACAGCATGTCCTTGGAGAGCTTCT : 801656 358 : erThr >>>> Target Intron 6 >>>> ValLeuSerThrSerPheSerTyr : 366 ||! ! 151 bp |||||||||||||||||||||||| erLys++ ++ValLeuSerThrSerPheSerTyr 801655 : CGAAGgt.........................agGTACTCAGCACGTCTTTCTCCTAC : 801478 367 : PheThrValLeuThrAlaThrLysGluAsp : 376 ||||||||||||||||||||||||!!:||| PheThrValLeuThrAlaThrLysAspAsp 801477 : TTCACGGTCCTCACAGCCACCAAAGACGAC : 801446 vulgar: Lalb_14720 0 376 . KQ414667.1 806042 801445 - 1420 M 52 156 5 0 2 I 0 680 3 0 2 M 103 309 5 0 2 I 0 724 3 0 2 M 84 252 S 0 2 5 0 2 I 0 722 3 0 2 S 1 1 M 33 99 5 0 2 I 0 57 3 0 2 M 35 105 5 0 2 I 0 1115 3 0 2 M 50 150 5 0 2 I 0 147 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414667.1 exonerate:protein2genome:local gene 801446 806042 1420 - . gene_id 1 ; sequence Lalb_14720 ; gene_orientation + KQ414667.1 exonerate:protein2genome:local cds 805887 806042 . - . KQ414667.1 exonerate:protein2genome:local exon 805887 806042 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 805885 805886 . - . intron_id 1 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 805203 805886 . - . intron_id 1 KQ414667.1 exonerate:protein2genome:local splice3 805203 805204 . - . intron_id 0 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 804894 805202 . - . KQ414667.1 exonerate:protein2genome:local exon 804894 805202 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 804892 804893 . - . intron_id 2 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 804166 804893 . - . intron_id 2 KQ414667.1 exonerate:protein2genome:local splice3 804166 804167 . - . intron_id 1 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 803912 804165 . - . KQ414667.1 exonerate:protein2genome:local exon 803912 804165 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 803910 803911 . - . intron_id 3 ; splice_site "TT" KQ414667.1 exonerate:protein2genome:local intron 803186 803911 . - . intron_id 3 KQ414667.1 exonerate:protein2genome:local splice3 803186 803187 . - . intron_id 2 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 803086 803185 . - . KQ414667.1 exonerate:protein2genome:local exon 803086 803185 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 803084 803085 . - . intron_id 4 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 803025 803085 . - . intron_id 4 KQ414667.1 exonerate:protein2genome:local splice3 803025 803026 . - . intron_id 3 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 802920 803024 . - . KQ414667.1 exonerate:protein2genome:local exon 802920 803024 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 802918 802919 . - . intron_id 5 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801801 802919 . - . intron_id 5 KQ414667.1 exonerate:protein2genome:local splice3 801801 801802 . - . intron_id 4 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801651 801800 . - . KQ414667.1 exonerate:protein2genome:local exon 801651 801800 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 801649 801650 . - . intron_id 6 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801500 801650 . - . intron_id 6 KQ414667.1 exonerate:protein2genome:local splice3 801500 801501 . - . intron_id 5 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801446 801499 . - . KQ414667.1 exonerate:protein2genome:local exon 801446 801499 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local similarity 801446 806042 1420 - . alignment_id 1 ; Query Lalb_14720 ; Align 806043 1 156 ; Align 805203 53 309 ; Align 804166 156 252 ; Align 803185 241 99 ; Align 803025 274 105 ; Align 801801 309 150 ; Align 801500 359 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr3 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 341 -> 394 Target range: 1395323 -> 1395482 342 : SerGluLysIleGlyGluAlaSerTyrPheIleAsnTrpTyrAlaLeuProAlaLy : 360 ||| !..!|||.!!.!.|||:!!||| ! ! !|||||| !||| ! !!:! SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 361 : sAsnMetSerAsnLeuIleMetMetMetValArgSerAsnArgSerSerThrLeuT : 379 !:!!! !! !:!!|||:!::!:|||:!!||||||.!.||| !!! !|||:!!| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 380 : hrAlaGlyLysIlePheAspIleSerLeuGlnGlyPheSerAspVal : 394 |||||||||||.!!.!.|||:!:||||||:!!||||||:!!:!!||| hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnVal 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTA : 1395482 vulgar: CbirOr3 341 394 . KQ414716.1 1395323 1395482 + 119 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395482 119 + . gene_id 1 ; sequence CbirOr3 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395482 119 + . alignment_id 1 ; Query CbirOr3 ; Align 1395324 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14719 [mRNA] [translate_table: standard] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 316 -> 376 Target range: 1387619 -> 1387799 317 : SerGluGlyIleTyrAsnAlaAlaTyrGluCysAsnTrpThrAspLeuLysSerAs : 335 |||||| !!||| .!.:!:...|||... ||| !||||||||| !!.. SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 336 : nGluAlaArgAsnLeuIleLeuIleMetValArgAlaLysLysProPheTyrLeuT : 354 .||||||||| ::::::||||||::::::|||:!!:!!||| !!!. |||| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 355 : hrAlaGlyLysLeuPheProMetAsnMetLeuThrLeuCysAsnIleLeuLysIle : 372 |||||||||||!!! ! !:!:::!:!! !.!!!!!..!|||::: ... hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnValArgAsn*** 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgtaagaaattga : 1387785 373 : SerLeuSerTyr : 376 :::... ||| AsnPheArgTyr 1387786 : aattttcggtaT : 1387799 vulgar: Lalb_14719 316 376 . KQ414716.1 1387619 1387799 + 104 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387799 104 + . gene_id 1 ; sequence Lalb_14719 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387799 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387799 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387799 104 + . alignment_id 1 ; Query Lalb_14719 ; Align 1387620 317 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14728 [mRNA] [translate_table: standard] Target: KQ414731.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold204, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1382 Query range: 0 -> 353 Target range: 591043 -> 587891 1 : MetMetLysPheLysGlnGlnGlyLeuValAlaAspLeuSerProAsnIleMetLeuM : 20 |||||||||||||||||||||||||||||||||||||||! !|||||||||! !|||| MetMetLysPheLysGlnGlnGlyLeuValAlaAspLeuMetProAsnIleLysLeuM 591043 : ATGATGAAGTTCAAGCAACAGGGGCTAGTCGCGGACTTAATGCCCAACATAAAGCTGA : 590986 21 : etLysIleSerGlyHisPheLeuPheAsnTyrTyrLysAspGlySerSerLysPheIl : 39 ||||| !|||||||||||||||||||||||||||! |||..!:!!!!!||| !!! etLysAlaSerGlyHisPheLeuPheAsnTyrTyrThrAspAsnAlaThrLysGlyMe 590985 : TGAAAGCCAGTGGGCATTTTTTGTTCAACTATTACACTGACAATGCTACGAAGGGTAT : 590929 40 : eHisLysValPheCysIle >>>> Target Intron 1 >>>> ValHisLeuS : 49 :||||||:!!!:!|||||| 419 bp ||||||||| tHisLysIleTyrCysIle++ ++ValHisLeuV 590928 : GCACAAAATCTACTGCATCgt.........................agGTGCATCTAG : 590480 50 : erLeuValLeuLeuGlnPheGlyLeuCysGlyIleAsnLeuMetLeuGluSerAspAs : 68 !|||:!!|||:!!|||||||||!!!|||||||||||||||||||||||||||||||| alLeuIleLeuIleGlnPheGlyPheCysGlyIleAsnLeuMetLeuGluSerAspAs 590479 : TACTGATCCTAATACAGTTCGGATTCTGCGGTATAAACCTAATGTTGGAGAGCGACGA : 590423 69 : pValAspValLeuThrAlaAsnThrIleThrMetLeuPhePheThrHisSerValVal : 87 |||||||! !|||||||||||||||||||||||||||||||||||||||||||||||| pValAspGluLeuThrAlaAsnThrIleThrMetLeuPhePheThrHisSerValVal 590422 : CGTTGACGAACTGACGGCGAACACGATCACGATGCTGTTCTTCACGCACAGCGTGGTT : 590366 88 : LysLeuIleTyrPheAlaValArgThrLysLeuPheTyrArgThrPheAlaIleTrpA : 107 |||||| !|||||||||||||||!:!|||||||||||||||||||||!.!||||||| LysLeuGlyTyrPheAlaValArgSerLysLeuPheTyrArgThrPheGlyIleTrpA 590365 : AAGCTCGGTTATTTCGCCGTCAGGAGCAAGTTGTTCTACAGAACCTTCGGTATTTGGA : 590306 108 : snAsnProAsnSerHisProLeuPheAlaGluSerAsnAlaArgTyrHisGlnIleAl : 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| snAsnProAsnSerHisProLeuPheAlaGluSerAsnAlaArgTyrHisGlnIleAl 590305 : ATAATCCGAACAGCCATCCTCTGTTCGCCGAGAGTAACGCGCGTTATCATCAGATTgc : 590249 127 : aIleLysLysMetArgIleLeuLeuMetAlaValMetGlyAlaThrIleValSerThr : 145 |:::||||||||||||||||||||||||||||||||||||.!!!:!:!::!!!!!..! aValLysLysMetArgIleLeuLeuMetAlaValMetGlyThrSerValLeuThrVal 590248 : tgtgaaaaaaatgagaatacTGTTGATGGCCGTCATGGGAACCAGTGTGCTCACCGTC : 590192 146 : IleSerTrpThrThrLeuThrPheIleGlyAspSerValLysLysValValAspProV : 165 |||||||||||||||:!!|||||||||||||||||||||||||||||||||||||||| IleSerTrpThrThrIleThrPheIleGlyAspSerValLysLysValValAspProV 590191 : ATTTCTTGGACCACAATCACGTTCATCGGTGATTCCGTGAAGAAGGTCGTCGATCCTG : 590132 166 : alThrAsnGluThrSerPheValGlu >>>> Target Intron 2 >>>> Val : 174 |||||||||||||||||||||||||| 672 bp ||| alThrAsnGluThrSerPheValGlu++ ++Val 590131 : TTACCAACGAAACCTCTTTTGTCGAggt.........................agGTA : 589433 175 : ProArgLeuMetValTyrSerPheTyrProPheAspAlaArgHisGlyValAlaHisI : 194 ||||||||||||||| !|||!::||||||!:!||| !!!!!||||||:!!||||||| ProArgLeuMetValArgSerTrpTyrProTyrAspProSerHisGlyMetAlaHisI 589432 : CCAAGATTGATGGTGCGTTCTTGGTATCCGTACGACCCCAGCCACGGGATGGCTCACA : 589373 195 : leMetMetLeuIlePheGlnPheTyrPheLeuLeuPheThrMetLeuAspAlaAsnLe : 213 ||:!:! !|||:!!||||||.!!|||!::|||:!!||||||!!: !||||||||||| leLeuThrLeuValPheGlnLeuTyrTrpLeuIlePheThrIleAlaAspAlaAsnLe 589372 : TTCTTACGTTAGTATTCCAACTTTACTGGCTGATATTTACCATAGCAGACGCGAATCT : 589316 214 : uPheAspThrLeuPheCysSerTrpLeuLeuPheAlaCysGluGlnIleGlnHisLeu : 232 |.!.|||..!|||||||||||||||||||||||||||||||||||||||||||||||| uLeuAspValLeuPheCysSerTrpLeuLeuPheAlaCysGluGlnIleGlnHisLeu 589315 : CCTAGACGTGCTGTTCTGTTCGTGGCTCCTCTTCGCTTGTGAACAAATTCAGCATCTA : 589259 233 : LysAsnIleMetLysProLeuMetGluPheSerAlaThrLeuAspThrValValProA : 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| LysAsnIleMetLysProLeuMetGluPheSerAlaThrLeuAspThrValValProA 589258 : AAGAATATCATGAAACCACTGATGGAATTCAGCGCGACCCTGGACACTGTTGTACCAA : 589199 253 : snSerGlyGluLeuPheLys >>>> Target Intron 3 >>>> AlaSerSer : 261 |||||||||||||||||||| 1002 bp |||.!!:!! snSerGlyGluLeuPheLys++ ++AlaGlyAla 589198 : ACAGTGGAGAATTGTTTAAAgt.........................agGCCGGTGCG : 588170 262 : AlaLysProValAlaGluIleAspAlaProProProProProIleThrProThrGlyG : 281 !! ! ! !!.!:!! !.!.! !! !||||||||| !!! !!! ! !! ! AsnMetAspHisGlyLysAspGlnAspLeuProProProAlaThrProHisProGlnT 588169 : AACATGGATCACGGGAAGGATCAAGATCTACCACCGCCAGCCACGCCACATCCTCAAA : 588110 282 : lyAspSerMetLeuAspMetAspLeuArgArgIleTyrAsnAsnArgGlnAspPheTh : 300 !|||!:!||||||||||||||||||||| !!||||||!:!|||||| !|||!:!|| hrAspAsnMetLeuAspMetAspLeuArgGlyIleTyrSerAsnArgThrAspTyrTh 588109 : CCGATAATATGCTGGACATGGATCTTCGAGGAATATACAGCAACAGGACAGATTACAC : 588053 301 : rAlaAsnPheArgProAsnAlaGlyGlyGlnTyrAsnGlyThrIleGlyProAsnGly : 319 |.!!!.!|||||| !!!.!||||||!.! !:!|||||| !:!!|||||||||||| rThrThrPheArgAlaThrAlaGlyAlaThrPheAsnGlyGlyValGlyProAsnGly 588052 : GACTACCTTCCGGGCAACTGCTGGCGCGACCTTTAACGGCGGTGTAGGACCAAATGGA : 587996 320 : LeuThrLysAsnGlnGluMetLeuValArgSerAlaIleLysTyrTrpValGluArgH : 339 ||||||:!!!!.|||||||||||||||||||||||||||||||||||||||||||||| LeuThrGlnLysGlnGluMetLeuValArgSerAlaIleLysTyrTrpValGluArgH 587995 : TTGACACAGAAACAGGAGATGTTGGTCAGAAGTGCCATCAAATATTGGGTAGAGAGGC : 587936 340 : isLysHisIleValArgLeuValThrAlaValGlyAspAlaTyr : 353 |||||||||||||||||! !||| !!.! !! !|||...::: isLysHisIleValArg***ValHisValPhePheAspValPhe 587935 : ACAAACACATTGTCAGGTAAGTACATGTTTTCTTCGAtgttttc : 587892 vulgar: Lalb_14728 0 353 . KQ414731.1 591043 587891 - 1382 M 45 135 5 0 2 I 0 415 3 0 2 M 128 384 5 0 2 I 0 668 3 0 2 M 85 255 5 0 2 I 0 998 3 0 2 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414731.1 exonerate:protein2genome:local gene 587892 591043 1382 - . gene_id 1 ; sequence Lalb_14728 ; gene_orientation + KQ414731.1 exonerate:protein2genome:local cds 590909 591043 . - . KQ414731.1 exonerate:protein2genome:local exon 590909 591043 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 590907 590908 . - . intron_id 1 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 590490 590908 . - . intron_id 1 KQ414731.1 exonerate:protein2genome:local splice3 590490 590491 . - . intron_id 0 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 590106 590489 . - . KQ414731.1 exonerate:protein2genome:local exon 590106 590489 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 590104 590105 . - . intron_id 2 ; splice_site "gt" KQ414731.1 exonerate:protein2genome:local intron 589434 590105 . - . intron_id 2 KQ414731.1 exonerate:protein2genome:local splice3 589434 589435 . - . intron_id 1 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 589179 589433 . - . KQ414731.1 exonerate:protein2genome:local exon 589179 589433 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 589177 589178 . - . intron_id 3 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 588177 589178 . - . intron_id 3 KQ414731.1 exonerate:protein2genome:local splice3 588177 588178 . - . intron_id 2 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 587892 588176 . - . KQ414731.1 exonerate:protein2genome:local exon 587892 588176 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local similarity 587892 591043 1382 - . alignment_id 1 ; Query Lalb_14728 ; Align 591044 1 135 ; Align 590490 46 384 ; Align 589434 174 255 ; Align 588177 259 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14728 [mRNA] [translate_table: standard] Target: KQ414731.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold204, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 401 Query range: 343 -> 451 Target range: 582363 -> 580207 344 : ArgLeuValThrAlaValGlyAspAlaTyrGlyValAlaLeuLeuLeuHisMetLeuA : 363 ||||||||||||:!!||||||||||||||||||||||||||||||||||||||||||| ArgLeuValThrSerValGlyAspAlaTyrGlyValAlaLeuLeuLeuHisMetLeuA 582363 : agATTGGTCACTTCAGTCGGTGATGCTTACGGTGTTGCTCTACTGCTGCACATGTTAG : 582306 364 : laThrThrIleThrLeuThrLeuLeuAlaTyrGlnAlaThrLys >>>> Target : 378 |||||||||||||||||||||||||||||||||||||||||||| 74 laThrThrIleThrLeuThrLeuLeuAlaTyrGlnAlaThrLys++ 582305 : CCACCACCATCACCTTAACTTTGCTTGCTTACCAAGCAACGAAGgt............ : 582259 379 : Intron 1 >>>> IleAsnGlyValAsnValTyrSerAlaSerThrIleGlyTyrL : 392 2 bp |||:!!||||||:!!..!|||:!!||||||..!|||||||||| ++IleHisGlyValAspThrTyrAlaAlaSerValIleGlyTyrL 582258 : .............agATACACGGTGTCGATACATACGCAGCATCGGTAATAGGCTACT : 581477 393 : euLeuTyrSerLeuGlyGlnValPheMetLeuCysIlePheGlyAsnArgLeuIleGl : 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| euLeuTyrSerLeuGlyGlnValPheMetLeuCysIlePheGlyAsnArgLeuIleGl 581476 : TGTTGTACTCCCTGGGACAAGTTTTCATGCTCTGCATATTTGGAAACCGTCTCATTGA : 581420 412 : uGlu >>>> Target Intron 2 >>>> SerSerSerValMetGluAlaAlaT : 421 |||| 533 bp ||||||||||||||||||||||||| uGlu++ ++SerSerSerValMetGluAlaAlaT 581419 : AGAGgt.........................agAGCTCATCTGTGATGGAAGCCGCTT : 580857 422 : yrSerCysHisTrpTyrGlyGlyLeuValIleArgThrAsnCys >>>> Target : 436 |||||||||||||||||! !|||! !! ! !! !!.!! ! 55 yrSerCysHisTrpTyrAspGlySerGluGluAlaLysThrPhe++ 580856 : ACTCTTGTCACTGGTACGACGGGTCAGAGGAGGCTAAGACTTTCgt............ : 580810 437 : Intron 3 >>>> ValLeuGlyAlaMetValThrTyrPheMetValLeuValGlnL : 450 7 bp ||||||||||||||||||||||||||||||||||||||||||| ++ValLeuGlyAlaMetValThrTyrPheMetValLeuValGlnL 580809 : .............agGTGCTGGGAGCTATGGTCACATACTTCATGGTGTTGGTGCAAC : 580213 451 : euLys : 451 ||||| euLys 580212 : TGAAG : 580208 vulgar: Lalb_14728 343 451 . KQ414731.1 582363 580207 - 401 M 34 102 5 0 2 I 0 738 3 0 2 M 35 105 5 0 2 I 0 529 3 0 2 M 23 69 5 0 2 I 0 553 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414731.1 exonerate:protein2genome:local gene 580208 582363 401 - . gene_id 2 ; sequence Lalb_14728 ; gene_orientation + KQ414731.1 exonerate:protein2genome:local cds 582262 582363 . - . KQ414731.1 exonerate:protein2genome:local exon 582262 582363 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 582260 582261 . - . intron_id 1 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 581520 582261 . - . intron_id 1 KQ414731.1 exonerate:protein2genome:local splice3 581520 581521 . - . intron_id 0 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 581415 581519 . - . KQ414731.1 exonerate:protein2genome:local exon 581415 581519 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 581413 581414 . - . intron_id 2 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 580882 581414 . - . intron_id 2 KQ414731.1 exonerate:protein2genome:local splice3 580882 580883 . - . intron_id 1 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 580813 580881 . - . KQ414731.1 exonerate:protein2genome:local exon 580813 580881 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 580811 580812 . - . intron_id 3 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 580256 580812 . - . intron_id 3 KQ414731.1 exonerate:protein2genome:local splice3 580256 580257 . - . intron_id 2 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 580208 580255 . - . KQ414731.1 exonerate:protein2genome:local exon 580208 580255 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local similarity 580208 582363 401 - . alignment_id 2 ; Query Lalb_14728 ; Align 582364 344 102 ; Align 581520 378 105 ; Align 580882 413 69 ; Align 580256 436 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr1 Target: KQ414731.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold204, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1302 Query range: 0 -> 356 Target range: 591043 -> 587876 1 : MetMetLysMetLysGlnGlnGlyLeuValAlaAspLeuLeuProAsnIleArgValM : 20 |||||||||.!.|||||||||||||||||||||||||||:!!|||||||||!:!:!!| MetMetLysPheLysGlnGlnGlyLeuValAlaAspLeuMetProAsnIleLysLeuM 591043 : ATGATGAAGTTCAAGCAACAGGGGCTAGTCGCGGACTTAATGCCCAACATAAAGCTGA : 590986 21 : etLysThrPheGlyHisPheValPheAsnTyrTyrAsnAspAsnSerSerLysTyrLe : 39 |||||.!! !|||||||||:!!||||||||||||!.!||||||:!!!!!||| !:! etLysAlaSerGlyHisPheLeuPheAsnTyrTyrThrAspAsnAlaThrLysGlyMe 590985 : TGAAAGCCAGTGGGCATTTTTTGTTCAACTATTACACTGACAATGCTACGAAGGGTAT : 590929 40 : uHisLysValTyrCysCys >>>> Target Intron 1 >>>> ValAsnLeuP : 49 !||||||:!!|||||| ! 419 bp |||:!!||| tHisLysIleTyrCysIle++ ++ValHisLeuV 590928 : GCACAAAATCTACTGCATCgt.........................agGTGCATCTAG : 590480 50 : heMetLeuLeuLeuGlnPheGlyLeuCysAlaValAsnLeuIleValGluSerAlaAs : 68 ! :!!:!!|||:!!|||||||||!!!|||!.!:!!||||||!!::!!||||||! !|| alLeuIleLeuIleGlnPheGlyPheCysGlyIleAsnLeuMetLeuGluSerAspAs 590479 : TACTGATCCTAATACAGTTCGGATTCTGCGGTATAAACCTAATGTTGGAGAGCGACGA : 590423 69 : pValAspAspLeuThrAlaAsnThrIleThrLeuLeuPhePheThrHisSerIleVal : 87 |||||||!!:|||||||||||||||||||||:!!||||||||||||||||||:!:||| pValAspGluLeuThrAlaAsnThrIleThrMetLeuPhePheThrHisSerValVal 590422 : CGTTGACGAACTGACGGCGAACACGATCACGATGCTGTTCTTCACGCACAGCGTGGTT : 590366 88 : LysIleCysTyrPheAlaIleArgSerLysTyrPheTyrArgThrTrpAlaIleTrpA : 107 |||:!! !!|||||||||:!!|||||||||! ||||||||||||!::!.!||||||| LysLeuGlyTyrPheAlaValArgSerLysLeuPheTyrArgThrPheGlyIleTrpA 590365 : AAGCTCGGTTATTTCGCCGTCAGGAGCAAGTTGTTCTACAGAACCTTCGGTATTTGGA : 590306 108 : snAsnProAsnSerHisProLeuPheAlaGluSerAsnAlaArgTyrHisAlaIleAl : 126 |||||||||||||||||||||||||||||||||||||||||||||||||| !||||| snAsnProAsnSerHisProLeuPheAlaGluSerAsnAlaArgTyrHisGlnIleAl 590305 : ATAATCCGAACAGCCATCCTCTGTTCGCCGAGAGTAACGCGCGTTATCATCAGATTgc : 590249 127 : aLeuLysLysMetArgLeuLeuLeuPheLeuValGlyGlyThrThrMetLeuAlaAla : 145 |:::||||||||||||:::||||||.!. !||| !||||||!:!:!!|||.!!!.! aValLysLysMetArgIleLeuLeuMetAlaValMetGlyThrSerValLeuThrVal 590248 : tgtgaaaaaaatgagaatacTGTTGATGGCCGTCATGGGAACCAGTGTGCTCACCGTC : 590192 146 : ValAlaTrpThrValLeuThrPhePheGluHisProIleArgLysIleValAspProV : 165 :!!:!!||||||..!:!!||||||.!!! !! !!:!:!:!|||:!!|||||||||| IleSerTrpThrThrIleThrPheIleGlyAspSerValLysLysValValAspProV 590191 : ATTTCTTGGACCACAATCACGTTCATCGGTGATTCCGTGAAGAAGGTCGTCGATCCTG : 590132 166 : alThrAsnGluThrGluIleIleGlu >>>> Target Intron 2 >>>> Leu : 174 ||||||||||||||....!!:!!||| 672 bp :!! alThrAsnGluThrSerPheValGlu++ ++Val 590131 : TTACCAACGAAACCTCTTTTGTCGAggt.........................agGTA : 589433 175 : ProGlnLeuLeuIleArgSerPheTyrProPheAspAlaGlyLysGlyIleThrHisV : 194 |||::!|||:!!:!:||||||!::||||||!:!||| !!.!! ! |||!!:.!!|||: ProArgLeuMetValArgSerTrpTyrProTyrAspProSerHisGlyMetAlaHisI 589432 : CCAAGATTGATGGTGCGTTCTTGGTATCCGTACGACCCCAGCCACGGGATGGCTCACA : 589373 195 : alLeuValLeuValTyrGlnPheTyrTrpValLeuPheMetLeuIleAspAlaAsnSe : 213 !!|||..!||||||!:!|||.!!||||||:!!:!!|||! :!! !||||||||| leLeuThrLeuValPheGlnLeuTyrTrpLeuIlePheThrIleAlaAspAlaAsnLe 589372 : TTCTTACGTTAGTATTCCAACTTTACTGGCTGATATTTACCATAGCAGACGCGAATCT : 589316 214 : rLeuAspValLeuPheCysSerTrpLeuLeuPheAlaCysGluGlnLeuGlnHisLeu : 232 !|||||||||||||||||||||||||||||||||||||||||||||:!!||||||||| uLeuAspValLeuPheCysSerTrpLeuLeuPheAlaCysGluGlnIleGlnHisLeu 589315 : CCTAGACGTGCTGTTCTGTTCGTGGCTCCTCTTCGCTTGTGAACAAATTCAGCATCTA : 589259 233 : LysGlnIleMetLysProLeuMetGluLeuSerAlaThrLeuAspThrValValProA : 252 |||.!.|||||||||||||||||||||!!!|||||||||||||||||||||||||||| LysAsnIleMetLysProLeuMetGluPheSerAlaThrLeuAspThrValValProA 589258 : AAGAATATCATGAAACCACTGATGGAATTCAGCGCGACCCTGGACACTGTTGTACCAA : 589199 253 : snSerSerGluLeuPheLys >>>> Target Intron 3 >>>> AlaGly<-> : 261 |||||.!!|||||||||||| 1002 bp |||||| snSerGlyGluLeuPheLys++ ++AlaGlyAla 589198 : ACAGTGGAGAATTGTTTAAAgt.........................agGCCGGTGCG : 588170 262 : SerAlaAspHisLeuArgAspGlyAspAsnProProProProProPro<->ProGlnS : 279 !:! !|||||| !!:!||| !||| ||||||||| !! !!||| ||||||! AsnMetAspHisGlyLysAspGlnAspLeuProProProAlaThrProHisProGlnT 588169 : AACATGGATCACGGGAAGGATCAAGATCTACCACCGCCAGCCACGCCACATCCTCAAA : 588110 280 : erAspAsnMetLeuAspLeuAspLeuArgAsnIleTyrSerAsnArgGlnAspPheTh : 298 !!|||||||||||||||:!!|||||||||...||||||||||||||| !|||!:!|| hrAspAsnMetLeuAspMetAspLeuArgGlyIleTyrSerAsnArgThrAspTyrTh 588109 : CCGATAATATGCTGGACATGGATCTTCGAGGAATATACAGCAACAGGACAGATTACAC : 588053 299 : rAlaThrPheArgProThrAlaGlyMetThrPheAsnGlyGlyValGlyProAsnGly : 317 |.!!||||||||| !!||||||||| !|||||||||||||||||||||||||||||| rThrThrPheArgAlaThrAlaGlyAlaThrPheAsnGlyGlyValGlyProAsnGly 588052 : GACTACCTTCCGGGCAACTGCTGGCGCGACCTTTAACGGCGGTGTAGGACCAAATGGA : 587996 318 : LeuThrLysLysGlnGluAlaLeuValArgSerAlaIleLysTyrTrpValGluArgH : 337 ||||||:!!||||||||| !||||||||||||||||||||||||||||||||||||| LeuThrGlnLysGlnGluMetLeuValArgSerAlaIleLysTyrTrpValGluArgH 587995 : TTGACACAGAAACAGGAGATGTTGGTCAGAAGTGCCATCAAATATTGGGTAGAGAGGC : 587936 338 : isLysHisIleValArgLeuValThrAlaValGlyAspAlaTyrGlyPheAlaLeuLe : 356 |||||||||||||||||! !||| !!.! !! !|||...::: ||| !|| isLysHisIleValArg***ValHisValPhePheAspValPheThrPheLeuGlnLe 587935 : ACAAACACATTGTCAGGTAAGTACATGTTTTCTTCGAtgttttcacatttcttcAACT : 587879 357 : u : 356 | u 587878 : C : 587877 vulgar: CbirOr1 0 356 . KQ414731.1 591043 587876 - 1302 M 45 135 5 0 2 I 0 415 3 0 2 M 128 384 5 0 2 I 0 668 3 0 2 M 85 255 5 0 2 I 0 998 3 0 2 M 2 6 G 0 3 M 16 48 G 0 3 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414731.1 exonerate:protein2genome:local gene 587877 591043 1302 - . gene_id 1 ; sequence CbirOr1 ; gene_orientation + KQ414731.1 exonerate:protein2genome:local cds 590909 591043 . - . KQ414731.1 exonerate:protein2genome:local exon 590909 591043 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 590907 590908 . - . intron_id 1 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 590490 590908 . - . intron_id 1 KQ414731.1 exonerate:protein2genome:local splice3 590490 590491 . - . intron_id 0 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 590106 590489 . - . KQ414731.1 exonerate:protein2genome:local exon 590106 590489 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 590104 590105 . - . intron_id 2 ; splice_site "gt" KQ414731.1 exonerate:protein2genome:local intron 589434 590105 . - . intron_id 2 KQ414731.1 exonerate:protein2genome:local splice3 589434 589435 . - . intron_id 1 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 589179 589433 . - . KQ414731.1 exonerate:protein2genome:local exon 589179 589433 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 589177 589178 . - . intron_id 3 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 588177 589178 . - . intron_id 3 KQ414731.1 exonerate:protein2genome:local splice3 588177 588178 . - . intron_id 2 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 587877 588176 . - . KQ414731.1 exonerate:protein2genome:local exon 587877 588176 . - . insertions 6 ; deletions 0 KQ414731.1 exonerate:protein2genome:local similarity 587877 591043 1302 - . alignment_id 1 ; Query CbirOr1 ; Align 591044 1 135 ; Align 590490 46 384 ; Align 589434 174 255 ; Align 588177 259 6 ; Align 588168 261 48 ; Align 588117 277 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr1 Target: KQ414731.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold204, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 576 Query range: 341 -> 478 Target range: 582363 -> 580207 342 : ArgLeuValThrAlaValGlyAspAlaTyrGlyPheAlaLeuLeuLeuHisMetLeuT : 361 ||||||||||||:!!|||||||||||||||||| !!|||||||||||||||||||||. ArgLeuValThrSerValGlyAspAlaTyrGlyValAlaLeuLeuLeuHisMetLeuA 582363 : agATTGGTCACTTCAGTCGGTGATGCTTACGGTGTTGCTCTACTGCTGCACATGTTAG : 582306 362 : hrThrThrIleThrLeuThrLeuLeuAlaTyrGlnAlaThrLys >>>> Target : 376 !!|||||||||||||||||||||||||||||||||||||||||| 74 laThrThrIleThrLeuThrLeuLeuAlaTyrGlnAlaThrLys++ 582305 : CCACCACCATCACCTTAACTTTGCTTGCTTACCAAGCAACGAAGgt............ : 582259 377 : Intron 1 >>>> ValAsnGlyIleAsnValTyrAlaAlaSerThrIleGlyTyrI : 390 2 bp :!!:!!|||:!!:!!..!||||||||||||..!|||||||||: ++IleHisGlyValAspThrTyrAlaAlaSerValIleGlyTyrL 582258 : .............agATACACGGTGTCGATACATACGCAGCATCGGTAATAGGCTACT : 581477 391 : leLeuTyrThrPheGlyGlnValPheLeuPheCysIlePheGlyAsnArgLeuIleGl : 409 !:||||||:!!.!.||||||||||||:!!.!!|||||||||||||||||||||||||| euLeuTyrSerLeuGlyGlnValPheMetLeuCysIlePheGlyAsnArgLeuIleGl 581476 : TGTTGTACTCCCTGGGACAAGTTTTCATGCTCTGCATATTTGGAAACCGTCTCATTGA : 581420 410 : uGlu >>>> Target Intron 2 >>>> SerThrSerValMetGluAlaAlaT : 419 |||| 533 bp |||:!!||||||||||||||||||| uGlu++ ++SerSerSerValMetGluAlaAlaT 581419 : AGAGgt.........................agAGCTCATCTGTGATGGAAGCCGCTT : 580857 420 : yrSerCysHisTrpTyrAspGlySerGluGluAlaLysThrPheValGlnIleValCy : 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| yrSerCysHisTrpTyrAspGlySerGluGluAlaLysThrPheValGlnIleValCy 580856 : ACTCTTGTCACTGGTACGACGGGTCAGAGGAGGCTAAGACTTTCGTACAAATCGTCTG : 580800 439 : sGlnGlnCysGlnLysAlaMetSerIleSerGlyAlaLysPhePheThrValSerLeu : 457 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| sGlnGlnCysGlnLysAlaMetSerIleSerGlyAlaLysPhePheThrValSerLeu 580799 : TCAACAGTGTCAAAAAGCGATGTCGATTTCAGGCGCGAAATTCTTCACCGTCTCTTTG : 580743 458 : AspLeuPheAlaSer >>>> Target Intron 3 >>>> ValLeuGlyAlaVa : 467 ||||||||||||||| 470 bp ||||||||||||:! AspLeuPheAlaSer++ ++ValLeuGlyAlaMe 580742 : GATCTTTTCGCTTCGgt.........................agGTGCTGGGAGCTAT : 580243 468 : lValThrTyrPheMetValLeuValGlnLeuLys : 478 !||||||||||||||||||||||||||||||||| tValThrTyrPheMetValLeuValGlnLeuLys 580242 : GGTCACATACTTCATGGTGTTGGTGCAACTGAAG : 580208 vulgar: CbirOr1 341 478 . KQ414731.1 582363 580207 - 576 M 34 102 5 0 2 I 0 738 3 0 2 M 35 105 5 0 2 I 0 529 3 0 2 M 52 156 5 0 2 I 0 466 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414731.1 exonerate:protein2genome:local gene 580208 582363 576 - . gene_id 2 ; sequence CbirOr1 ; gene_orientation + KQ414731.1 exonerate:protein2genome:local cds 582262 582363 . - . KQ414731.1 exonerate:protein2genome:local exon 582262 582363 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 582260 582261 . - . intron_id 1 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 581520 582261 . - . intron_id 1 KQ414731.1 exonerate:protein2genome:local splice3 581520 581521 . - . intron_id 0 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 581415 581519 . - . KQ414731.1 exonerate:protein2genome:local exon 581415 581519 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 581413 581414 . - . intron_id 2 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 580882 581414 . - . intron_id 2 KQ414731.1 exonerate:protein2genome:local splice3 580882 580883 . - . intron_id 1 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 580726 580881 . - . KQ414731.1 exonerate:protein2genome:local exon 580726 580881 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 580724 580725 . - . intron_id 3 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 580256 580725 . - . intron_id 3 KQ414731.1 exonerate:protein2genome:local splice3 580256 580257 . - . intron_id 2 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 580208 580255 . - . KQ414731.1 exonerate:protein2genome:local exon 580208 580255 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local similarity 580208 582363 576 - . alignment_id 2 ; Query CbirOr1 ; Align 582364 342 102 ; Align 581520 376 105 ; Align 580882 411 156 ; Align 580256 463 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14718 [mRNA] [translate_table: standard] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 894 Query range: 108 -> 343 Target range: 1344651 -> 1345843 109 : SerAsnTyrAspAsnCysThrLeuProTyrGluLeuProMetLysValAsnProVa : 127 !!!.!.!:!..!|||||||||||||||||||||||||||||||||||||||! !:! ThrGluPheSerAsnCysThrLeuProTyrGluLeuProMetLysValAsnHisLe 1344652 : ACAGAGTTCAGTAACTGTACTCTTCCTTACGAGCTACCAATGAAAGTGAACCACCT : 1344706 128 : lTyrGluValThrGluMetTyrThrTyrAlaPhePheCysValCysLeuValProV : 146 !|||||||||||||||:!! |||||||||!!.|||||||||! !!!!||||||. uTyrGluValThrGluValArgThrTyrAlaLeuPheCysValTyrPheValProT 1344707 : GTACGAAGTGACAGAGGTGCGGACGTACGCTTTGTTCTGCGTTTACTTCGTACCGA : 1344763 147 : alSerMetMetLeuThrIleGlyAlaThrGlyAlaAspSerLeuLeuValThrLeu : 164 .!||||||:!:||||||||||||||||||||||||||||||||||||||||||||| hrSerMetLeuLeuThrIleGlyAlaThrGlyAlaAspSerLeuLeuValThrLeu 1344764 : CGAGCATGTTACTAACAATCGGTGCAACTGGCGCCGACAGTCTTCTAGTCACCTTG : 1344817 165 : AsnPheTyrLeuCysSerGlnLeuSerIleLeuSerGlnArgValArgAsnIleAs : 183 !.!|||:!!||||||||||||!!!||||||||||||...||||||:::|||||||| ThrPheHisLeuCysSerGlnPheSerIleLeuSerSerArgValLysAsnIleAs 1344818 : ACTTTCCATCTTTGCAGTCAATTTTCGATcctgtcgagccgtgtaaaaAATATCGA : 1344874 184 : pSerAspProGlnLysHisValSerAsnMetArgIleLeuValGluArgHisIleG : 202 | !!!:|||||||||:!! !! !!.!.|||!:! !|||||||||||||||! !| pValGluProGlnLysTyrPheProGlnMetLysAlaLeuValGluArgHisThrG 1344875 : CGTCGAGCCGCAAAAGTATTTCCCACAAATGAAAGCACTCGTTGAACGGCACACCG : 1344931 203 : luLeuLeu{Ar} >>>> Target Intron 1 >>>> {g}LeuAlaSerThr : 209 ||||||||{||} 139 bp {|}||||||.!!! ! luLeuLeu{Ar}++ ++{g}LeuAlaGlyIle 1344932 : AACTTCTA{CG}gt.........................ag{A}TTGGCGGGCATT : 1345091 210 : LeuAlaGluThrPheSerSerLeuMetPheValGlnThrValGlyLeuIlePheSe : 228 ||||||||||||||||||!!!|||||||||:!!||||||:!!|||||||||||||| LeuAlaGluThrPheSerThrLeuMetPheIleGlnThrLeuGlyLeuIlePheSe 1345092 : TTGGCAGAGACGTTTAGTACTCTGATGTTTATACAAACTTTAGGgttgatattttc : 1345148 229 : rLeuCysIleValIleTyrGlnLeuLeuMet >>>> Target Intron 2 >> : 239 |||||||||||||:!!!:!|||||||||! ! 133 bp rLeuCysIleValValPheGlnLeuLeuThr++ 1345149 : tttatgCATCGTCGTCTTTCAATTACTCACGgt....................... : 1345183 240 : >> ThrSerGluSerSerGlyGlyAspValAsnThrIleHisPheIleIleTyrS : 256 ! !|||||| ||||||! !|||:!!||||||||||||||||||||||||| ++MetSerGlu---SerGlyGluAspMetAsnThrIleHisPheIleIleTyrS 1345184 : ..agATGAGCGAA---TCGGGCGAAGACATGAACACGATACACTTTATAATTTATT : 1345362 257 : erCysAlaValValLeuLeuAlaPheCysTyrCysPheLeuGlyGluCysLeuIle : 274 |||||||||||:!!|||||||||||||||||||||||||||||||||||||||||| erCysAlaValIleLeuLeuAlaPheCysTyrCysPheLeuGlyGluCysLeuIle 1345363 : CCTGCGCCGTTATATTACTAGCATTCTGCTATTGTTTCTTGGGAGAGTGCCTGATT : 1345416 275 : AlaGlu >>>> Target Intron 3 >>>> SerSerAspMetGlnLeuAla : 283 !||| 140 bp ||||||!!:||||||! !||| AsnGlu++ ++SerSerGluMetGlnGlnAla 1345417 : AACGAGgt.........................agAGTTCTGAAATGCAGCAGGCT : 1345583 284 : CysTyrPheThrAsnTrpTyrGluLeuProAsnGluTyrAlaLysAlaLeuMetPh : 302 |||||||||!:!|||||||||!!:||||||:!!:!!|||.!!::!:!!|||!!:|| CysTyrPheSerAsnTrpTyrAspLeuProAspLysTyrThrArgSerLeuIlePh 1345584 : TGTTACTTCAGTAATTGGTACGATTTACCAGATAAATACACGCGATCGTTAATATT : 1345640 303 : eCysIleAlaArgSerGlnLysProSerHisLeuThrAlaGlyLysPheTyrValP : 321 ||||||||||||||||||||||||||||:!!||||||||||||||||||||||||| eCysIleAlaArgSerGlnLysProSerTyrLeuThrAlaGlyLysPheTyrValP 1345641 : TTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAGCTGGCAAGTTCTACGTGT : 1345697 322 : heSerLeuGluThrPheGlyVal >>>> Target Intron 4 >>>> IleM : 330 ||||||||||||||||||||:!! 78 bp |||: heSerLeuGluThrPheGlyIle++ ++IleV 1345698 : TCTCGTTAGAAACATTCGGCATCgt.........................agATAG : 1345802 331 : etLysAlaSerMetAlaTyrLeuSerValLeuArgAsnIle : 343 !:||||||||||||||||||||||||||||||!:!!:!||| alLysAlaSerMetAlaTyrLeuSerValLeuLysSerIle 1345803 : TAAAAGCGTCGATGGCCTATCTTTCCGTTCTGAAAAGCATT : 1345843 vulgar: Lalb_14718 108 343 . KQ414782.1 1344651 1345843 + 894 M 96 288 S 0 2 5 0 2 I 0 135 3 0 2 S 1 1 M 33 99 5 0 2 I 0 129 3 0 2 M 3 9 G 1 0 M 34 102 5 0 2 I 0 136 3 0 2 M 52 156 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1344652 1345843 894 + . gene_id 1 ; sequence Lalb_14718 ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1344652 1344941 . + . KQ414782.1 exonerate:protein2genome:local exon 1344652 1344941 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1344942 1344943 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1344942 1345080 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345079 1345080 . + . intron_id 0 ; splice_site "AG" KQ414782.1 exonerate:protein2genome:local cds 1345081 1345180 . + . KQ414782.1 exonerate:protein2genome:local exon 1345081 1345180 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345181 1345182 . + . intron_id 2 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345181 1345313 . + . intron_id 2 KQ414782.1 exonerate:protein2genome:local splice3 1345312 1345313 . + . intron_id 1 ; splice_site "AG" KQ414782.1 exonerate:protein2genome:local cds 1345314 1345424 . + . KQ414782.1 exonerate:protein2genome:local exon 1345314 1345424 . + . insertions 0 ; deletions 1 KQ414782.1 exonerate:protein2genome:local splice5 1345425 1345426 . + . intron_id 3 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345425 1345564 . + . intron_id 3 KQ414782.1 exonerate:protein2genome:local splice3 1345563 1345564 . + . intron_id 2 ; splice_site "AG" KQ414782.1 exonerate:protein2genome:local cds 1345565 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 4 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 4 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 3 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345843 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345843 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1344652 1345843 894 + . alignment_id 1 ; Query Lalb_14718 ; Align 1344652 109 288 ; Align 1345082 206 99 ; Align 1345314 239 9 ; Align 1345323 243 102 ; Align 1345565 277 156 ; Align 1345799 329 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14718 [mRNA] [translate_table: standard] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 457 Query range: 0 -> 110 Target range: 1342202 -> 1342532 1 : MetIlePheThrTrpLeuGluIleValAlaLeuLeuGlnSerValHisAspLeuGl : 19 :!!||||||||||||||||||!!:|||.!!|||||||||!:!:!!||||||||||| ValIlePheThrTrpLeuGluMetValThrLeuLeuGlnAsnIleHisAspLeuGl 1342203 : GTGATCTTCACGTGGCTGGAGATGGTGACGCTGCTGCAGAATATACACGACCTTGA : 1342257 20 : uLysThrLeuLysAsnIleThrLeuSerPheProThrIleLeuIleValLeuLysT : 38 ||||:::||||||||||||||||||||||||||||||||||||||||||||||||. uLysSerLeuLysAsnIleThrLeuSerPheProThrIleLeuIleValLeuLysA 1342258 : GaagtcgttgaaaaatatcacgCTATCGTTCCCGACCATCTTGATAGTGCTGAAGG : 1342314 39 : hrValMetPheArgLeuAsnMetHisHisValLeuProLeuLeuAlaValValLys : 56 !!||||||||||||||||||||||||! !|||||||||||||||! !!.!|||!:! laValMetPheArgLeuAsnMetHisLeuValLeuProLeuLeuGluAlaValArg 1342315 : CCGTGATGTTTCGGCTGAACATGCATCTCGTCCTGCCGTTGCTCGAGGCAGTGAGA : 1342368 57 : ArgAspValGluHisGlyLeuTyrGlnSerGlnGluGluGlnArgThrValValTr : 75 !:!||||||:!!!!.|||||||||!:!||||||||||||::!|||||||||||||| LysAspValLysGlnGlyLeuTyrArgSerGlnGluGluArgArgThrValValTr 1342369 : AAGGACGTGAAACAGGGACTGTATCGGTCGCAGGAGGAAAGGCGAACGGTTGTATG : 1342425 76 : pTyrAsnValAlaAlaThrMetPheSerThrSerSerAlaLeuSerLeuPhePheV : 94 ||||!:!||||||||||||:!:||||||||||||||||||:!!||||||||||||| pTyrSerValAlaAlaThrLeuPheSerThrSerSerAlaMetSerLeuPhePheV 1342426 : GTACAGCGTGGCCGCCACCTTATTTTCCACGTCGTCGGCCATGTCTTTGTTCTTCG : 1342482 95 : alProThrLeuPheTyrAlaLysProIleValSerCysPheLeuSerAsn : 110 |||||||||||||||||.!!||||||||||||.!!|||.!.||||||!:! alProThrLeuPheTyrThrLysProIleValGlyCysLeuLeuSerSer 1342483 : TGCCCACGTTATTTTATACGAAGCCGATCGTCGGCTGTCTGTTGTCGAGT : 1342532 vulgar: Lalb_14718 0 110 . KQ414782.1 1342202 1342532 + 457 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1342203 1342532 457 + . gene_id 2 ; sequence Lalb_14718 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1342203 1342532 . + . KQ414782.1 exonerate:protein2genome:local exon 1342203 1342532 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1342203 1342532 457 + . alignment_id 2 ; Query Lalb_14718 ; Align 1342203 1 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr3 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 341 -> 394 Target range: 1345564 -> 1345723 342 : SerGluLysIleGlyGluAlaSerTyrPheIleAsnTrpTyrAlaLeuProAlaLy : 360 |||...:!!!!: !:!!|||!!!||||||! !|||||||||! !||||||! !|| SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 361 : sAsnMetSerAsnLeuIleMetMetMetValArgSerAsnArgSerSerThrLeuT : 379 | !!! ! !!:::||||||.!. !!:!.!||||||.!.!:! !!||| !|||| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 380 : hrAlaGlyLysIlePheAspIleSerLeuGlnGlyPheSerAspVal : 394 |||||||||||.!!!:!! .!!||||||:!! !|||.!! !||| hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIleVal 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCGTG : 1345723 vulgar: CbirOr3 341 394 . KQ414782.1 1345564 1345723 + 112 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345723 112 + . gene_id 1 ; sequence CbirOr3 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345723 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345723 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345723 112 + . alignment_id 1 ; Query CbirOr3 ; Align 1345565 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14718 [mRNA] [translate_table: standard] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 271 -> 343 Target range: 34369 -> 34668 272 : CysLeuIleAlaGluSerSerAspMetGlnLeuAlaCysTyrPheThrAsnTrpTyrGlu : 291 ||| !||| !:!!|||!!!!!:|||... !:!!..!||| :!!|||||||||.!. CysGlyIlePheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsn 34370 : tGTGGTATATTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAAC : 34427 292 : LeuProAsnGluTyrAlaLysAlaLeuMetPheCysIleAlaArgSerGlnLysProSer : 311 :!! !! ! ! ! ||||||..!|||:!:||| !!!: !|||!!! :::||| ! ValSerProProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeu 34428 : GTCTCACCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTT : 34487 312 : HisLeuThrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyVal >>>> Ta : 329 !|||||||||||||||||| !..!||||||:!!|||! !|||.!!..! CysLeuThrAlaGlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34488 : TGCTTGACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt....... : 34543 330 : rget Intron 1 >>>> IleMetLysAlaSerMetAlaTyrLeuSerValLeuArgA : 342 83 bp |||:!!|||.!!:!!|||!.!|||||||||||||||! !! ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeuT 34544 : ..................agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTCA : 34663 343 : snIle : 343 ..:!! hrVal 34664 : CAGTT : 34668 vulgar: Lalb_14718 271 343 . KQ414804.1 34369 34668 + 145 M 57 171 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34370 34668 145 + . gene_id 1 ; sequence Lalb_14718 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34370 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34370 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34668 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34668 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34370 34668 145 + . alignment_id 1 ; Query Lalb_14718 ; Align 34370 272 171 ; Align 34624 329 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14718 [mRNA] [translate_table: standard] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 276 -> 331 Target range: 39965 -> 40130 277 : SerSerAspMetGlnLeuAlaCysTyrPheThrAsnTrpTyrGluLeuProAsnGluTyr : 296 |||!!!! !!: ! !:!!...||| ! !|||||||||!!:|||||| :!!:!! SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 297 : AlaLysAlaLeuMetPheCysIleAlaArgSerGlnLysProSerHisLeuThrAlaGly : 316 ||| :!!|||:!:.!! |||..!|||:!!||| ! !!! !!!.:!!||||||||| AlaValSerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGly 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGA : 40083 317 : LysPheTyrValPheSerLeuGluThrPheGlyValIleMetLys : 331 |||||| ! !|||||||||||| !|||..!!.!:!:! ::! LysPheSerProPheSerLeuGluLeuPheAsnAlaValSerArg 40084 : AAATTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTGTGAGTCGA : 40130 vulgar: Lalb_14718 276 331 . KQ414804.1 39965 40130 + 112 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40130 112 + . gene_id 2 ; sequence Lalb_14718 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39966 40130 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40130 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39966 40130 112 + . alignment_id 2 ; Query Lalb_14718 ; Align 39966 277 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14719 [mRNA] [translate_table: standard] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 316 -> 363 Target range: 39965 -> 40106 317 : SerGluGlyIleTyrAsnAlaAlaTyrGluCysAsnTrpThrAspLeuLysSerAsnGlu : 336 ||| |||||| !.!.:!!||||||!!:||||||||| !|||||| ! !!!!..!. SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 337 : AlaArgAsnLeuIleLeuIleMetValArgAlaLysLysProPheTyrLeuThrAlaGly : 356 ||| !:::|||:!!:!!:!:!!: !||||||:!! ! !!||| ! :!!||||||||| AlaValSerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGly 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGA : 40083 357 : LysLeuPheProMetAsnMet : 363 |||!!! !|||.!.::!:!: LysPheSerProPheSerLeu 40084 : AAATTCAGTCCCTTTTCTCTC : 40106 vulgar: Lalb_14719 316 363 . KQ414804.1 39965 40106 + 112 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40106 112 + . gene_id 1 ; sequence Lalb_14719 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39966 40106 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40106 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39966 40106 112 + . alignment_id 1 ; Query Lalb_14719 ; Align 39966 317 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14719 [mRNA] [translate_table: standard] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 315 -> 376 Target range: 34381 -> 34564 316 : GlnSerGluGlyIleTyrAsnAlaAlaTyrGluCysAsnTrpThrAspLeuLysSerAsn : 335 ||||||..!! !!!: !|||:!!|||||||||! |||||| !:!!:!!..! !! GlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProPro 34382 : CAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCA : 34439 336 : GluAlaArgAsnLeuIleLeuIleMetValArgAlaLysLysProPheTyrLeuThrAla : 355 ||||||!:! !|||:!!!!!|||||| !|||.!! :::|||.!!! !||||||||| GluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAla 34440 : GAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCA : 34499 356 : GlyLysLeuPheProMetAsnMetLeuThrLeuCysAsnIleLeuLysIleSerLeuSer : 375 ||||||!!! ! !!.!.::!||| !! !!!! !!!.!:!! ! |||:::::: GlyLysPheSerThrPheSerMetGluMetPheSerThrValSerProIleAsnIleHis 34500 : GGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTGTAAGCccgataaatattcat : 34559 376 : Tyr : 376 ::: Phe 34560 : ttt : 34564 vulgar: Lalb_14719 315 376 . KQ414804.1 34381 34564 + 104 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34382 34564 104 + . gene_id 2 ; sequence Lalb_14719 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 34382 34564 . + . KQ414804.1 exonerate:protein2genome:local exon 34382 34564 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34382 34564 104 + . alignment_id 2 ; Query Lalb_14719 ; Align 34382 316 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14713 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 205 -> 251 Target range: 441705 -> 441843 206 : TyrAsnAlaLeuTrpTyrArgIleProProLysSerGlnLysMetLeuLeuPheValL : 225 ||||||:!! !|||||| !!:!!||| !!..:!!||||||:!!|||||||||:!!: TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 226 : euMetLysThrValThrGluValGlnPheAsnLeuAlaGlyLeuPheAsnProCysPh : 244 !!||||||!:!..!! ! ! !:!!.!.||||||:!!|||:!!||| !||||||!: etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 245 : eThrGlyPheAlaThrValIle : 251 !! !||||||:!!:!!|||||| rLysGlyPheSerSerValIle 441821 : CAAAGGTTTTTCCTCGGTAATT : 441843 vulgar: Lalb_14713 205 251 . KQ414815.1 441705 441843 + 139 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441843 139 + . gene_id 1 ; sequence Lalb_14713 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441706 441843 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441843 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441843 139 + . alignment_id 1 ; Query Lalb_14713 ; Align 441706 206 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14713 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 205 -> 251 Target range: 445817 -> 445955 206 : TyrAsnAlaLeuTrpTyrArgIleProProLysSerGlnLysMetLeuLeuPheValL : 225 ||||||:!! !|||||| !!:!!||| !!..:!!||||||:!!|||||||||:!!: TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 226 : euMetLysThrValThrGluValGlnPheAsnLeuAlaGlyLeuPheAsnProCysPh : 244 !!||||||!:!..!! ! ! !:!!.!!||||||:!!|||:!!||| !||||||!: etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 245 : eThrGlyPheAlaThrValIle : 251 !! !||||||:!!:!!|||||| rLysGlyPheSerSerValIle 445933 : CAAAGGTTTTTCCTCGGTAATT : 445955 vulgar: Lalb_14713 205 251 . KQ414815.1 445817 445955 + 139 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 445955 139 + . gene_id 2 ; sequence Lalb_14713 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445818 445955 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445955 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 445955 139 + . alignment_id 2 ; Query Lalb_14713 ; Align 445818 206 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14714 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 153 -> 247 Target range: 449196 -> 449743 154 : LeuPheValSerIleThrValValLysGluThrAspAsnThrMetPheAsnIleGlnV : 173 :!!.!! !|||!!:! !:!!:!! ! .!.||| ! !!.:!!:!!.!!! !:!:! | IleLeuGlnSerMetMetIleMetHisAsnThrLysLysSerLeuLeuIleLeuLeuV 449197 : ATTCTCCAGTCAATGATGATCATGCACAATACGAAAAAATCTCTGCTTATCTTGCTCG : 449254 174 : alValLeuAlaHisLeuAlaIleIlePheGlySerAsnTyrSerGlyGlnIleAlaMe : 192 ||:!!:!! !|||!!!|||||||||||| ||||||!!!! !|||! ! !!! alIleIleIleHisPheAlaIleIlePhePheCysAsnTyrThrValGlnAsnIleIl 449255 : TAATTATCATTCATTTTGCtatcatatttttctgtaactaCACCGTACAGAATATCAT : 449311 193 : tAspThrSerValLysIleValHisAla{Th} >>>> Target Intron 1 >>> : 202 :|||!:!|||..!!..||| !!:!!! !{||} 268 bp eAspSerSerThrSerIlePheTyrAsp{Th}++ 449312 : AGACAGTAGTACCAGTATATTCTATGAT{AC}gt........................ : 449345 203 : > {r}TyrAspSerLeuTrpTyrArgLeuProProLysMetGlnLysLeuIleLeuP : 220 {|}||| !!!!! !||||||..! !||| ! :!!||||||:!! !|||| ++{r}TyrTyrThrLysTrpTyrGluAlaProValPheValGlnLysMetTyrLeuP 449346 : .ag{G}TACTACACAAAATGGTACGAAGCTCCAGTGTTCGTGCAAAAGATGTACTTGT : 449663 221 : heMetMetIleLysAlaGlnThrLysLeuGluIleSerPheAlaGlyLeuPheThrPr : 239 ||:!!|||:!!!:!.!! !! ! ! :!!:!!||| !! !|||!!!!:!||||| heLeuMetLeuArgThrThrLysAspValLysIle---ValLeuGlyPheTyrThrPr 449664 : TCTTGATGCTAAGAACCACAAAAGACGTAAAGATA---GTTCTTGGTTTCTATACCCC : 449717 240 : oCysPheGluGlyPheSerThrVal : 247 |! .!.||||||||||||:!!||| oSerIleGluGlyPheSerSerVal 449718 : ATCGATAGAGGGTTTCTCCTCGGTA : 449743 vulgar: Lalb_14714 153 247 . KQ414815.1 449196 449743 + 146 M 48 144 S 0 2 5 0 2 I 0 264 3 0 2 S 1 1 M 29 87 G 1 0 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 449197 449743 146 + . gene_id 1 ; sequence Lalb_14714 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 449197 449342 . + . KQ414815.1 exonerate:protein2genome:local exon 449197 449342 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 449343 449344 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 449343 449610 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 449609 449610 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 449611 449743 . + . KQ414815.1 exonerate:protein2genome:local exon 449611 449743 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 449197 449743 146 + . alignment_id 1 ; Query Lalb_14714 ; Align 449197 154 144 ; Align 449612 203 87 ; Align 449699 233 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14714 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 202 -> 247 Target range: 445817 -> 445952 203 : TyrAspSerLeuTrpTyrArgLeuProProLysMetGlnLysLeuIleLeuPheMetM : 222 |||:!!||| !|||||| !!:!!||| !!.. !|||||||||:!!||||||!!:| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 223 : etIleLysAlaGlnThrLysLeuGluIleSerPheAlaGlyLeuPheThrProCysPh : 241 ||!!:|||::! !! ! !! !:!!|||!:!.!!:!!|||:!!|||.!!||||||!: etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 242 : eGluGlyPheSerThrVal : 247 !:!!|||||||||:!!||| rLysGlyPheSerSerVal 445933 : CAAAGGTTTTTCCTCGGTA : 445952 vulgar: Lalb_14714 202 247 . KQ414815.1 445817 445952 + 127 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 445952 127 + . gene_id 2 ; sequence Lalb_14714 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445818 445952 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445952 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 445952 127 + . alignment_id 2 ; Query Lalb_14714 ; Align 445818 203 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14714 [mRNA] [translate_table: standard] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 202 -> 247 Target range: 441705 -> 441840 203 : TyrAspSerLeuTrpTyrArgLeuProProLysMetGlnLysLeuIleLeuPheMetM : 222 |||:!!||| !|||||| !!:!!||| !!.. !|||||||||:!!||||||!!:| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 223 : etIleLysAlaGlnThrLysLeuGluIleSerPheAlaGlyLeuPheThrProCysPh : 241 ||!!:|||::! !! ! !! !:!!!!:!:!.!!:!!|||:!!|||.!!||||||!: etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 242 : eGluGlyPheSerThrVal : 247 !:!!|||||||||:!!||| rLysGlyPheSerSerVal 441821 : CAAAGGTTTTTCCTCGGTA : 441840 vulgar: Lalb_14714 202 247 . KQ414815.1 441705 441840 + 124 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441840 124 + . gene_id 3 ; sequence Lalb_14714 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441706 441840 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441840 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441840 124 + . alignment_id 3 ; Query Lalb_14714 ; Align 441706 203 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14725 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 313 Query range: 90 -> 212 Target range: 3360 -> 3717 91 : TyrIlePheGluCysThrPheIlePheGlnThrSerCysMetIleMetTyrGlyIleGlyTy : 111 |||! ! ! !||| !||| .!.|||! !! ! !!!:!!: ! !!|||.!!|| TyrThrSerLeuCysLeuPheSerLeuGlnIlePheIleIleMetTyrValCysIleSerTy 3361 : TACACCAGTTTATGTCTTTTTTCGCTACAGATTTTTATCATAATGTACGTTTGCATAAGCTA : 3421 112 : rLeuCysValAspAsnPheLeuCysIleThrAsnLeuGlnAlaAlaThrGlnPheArgIleL : 132 |||||||:!!|||||||||||||||!!:! !||||||!!..!!||||||||||||||||||| rLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleL 3422 : CCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATAT : 3484 133 : euGlnTyrArgIleAlaAsnIleArgLysAspAsnAspThrLysGluHisSerGlyIleSer : 152 |||||||||||:!::!!|||:!: !! ! |||!!: !!..::: |||||| euGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSerAspLys------IleSer 3485 : TGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcgataaa------atttcg : 3538 153 : ArgSerLeuProAlaTyrHisAlaAspHisCysTyrAlaValPheLysAspCysIleLysGl : 173 :::... |||:!! :!!:!!|||.!.||||||||| !||||||:!!||||||:!!|| LysLysThrProSer---AsnSerAspGluCysTyrAlaLysPheLysAsnCysIleGlnGl 3539 : aaaaaaacaCCGTCC---AATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACA : 3598 174 : nHisGlnAlaLeuIleSerTyrCysArgLysValGluGluLeuPheThrLeuIleValLeuG : 194 ||||||||||||||||..!||||||!.!|||:!!:!!|||:!!||| !:!!.!!||||||! nHisGlnAlaLeuIleGluTyrCysAsnLysLeuGlnGluValPheGlyIlePheValLeuA 3599 : GCATCAAGCACTCATAGAATACTGTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTG : 3661 195 : lyGlnValLeuIlePheSerIleLeuIleCysLeuAspGlyTyrLeuMetLeuLeu : 212 .!|||||||||:!!||||||:!:|||!!:||||||||||||||||||:!!:!!:!! laGlnValLeuLeuPheSerLeuLeuMetCysLeuAspGlyTyrLeuValMetVal 3662 : CACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGGATATTTGGTGATGGTT : 3717 vulgar: Lalb_14725 90 212 . KQ414828.1 3360 3717 + 313 M 58 174 G 2 0 M 7 21 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 3361 3717 313 + . gene_id 1 ; sequence Lalb_14725 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 3361 3717 . + . KQ414828.1 exonerate:protein2genome:local exon 3361 3717 . + . insertions 0 ; deletions 3 KQ414828.1 exonerate:protein2genome:local similarity 3361 3717 313 + . alignment_id 1 ; Query Lalb_14725 ; Align 3361 91 174 ; Align 3535 151 21 ; Align 3556 159 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14725 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 309 Query range: 97 -> 216 Target range: 18030 -> 18393 98 : IlePheGlnThrSerCysMetIleMetTyrGlyIleGlyTyrLeuCysValAspAsnPhe : 117 |||||| ..! !! !:!! ! !|||:!:.!!|||!!!||| ||||||||| IlePhe***ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPhe 18031 : attttttaggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgcttcgacaatttt : 18088 118 : LeuCysIleThrAsnLeuGlnAlaAlaThrGlnPheArgIleLeuGlnTyrArgIleAla : 137 |||||||||! !||||||!!.||||||||||||||||||:!!||||||||||||!!:||| LeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnTyrArgMetAla 18089 : ttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAATACCGAATGGCG : 18148 138 : AsnIleArg<-><->LysAspAsnAspThrLysGluHisSerGlyIleSerArgSerLeu : 155 |||!!:! ! ||||||...::: ||||||...::: !!!!!! ! ! AsnMetThrAspLeuLysAspLysGluArgLysGluArgAsnMetLysThrSerValSer 18149 : AATATGACCGATTTAAAGGacaaagagaggaaagagagaaatatgaAGACAAGTGTGAGT : 18208 156 : ProAlaTyrHisAlaAspHisCysTyrAlaValPheLysAspCysIleLysGlnHisGln : 175 !!|||! ! !||| .!.|||||| !|||.!!||||||! !|||!:!||||||||| SerAlaCysPheAlaThrGluCysTyrAsnValLeuLysAspTyrIleArgGlnHisGln 18209 : TCGGCGTGCTTTGCAACAGAATGTTACAACGTTCTCAAAGATTATATCAGACAGCATCAG : 18268 176 : AlaLeuIleSerTyrCysArgLysValGluGluLeuPheThrLeuIleValLeuGlyGln : 195 !||||||:!!||||||!.!|||:!!|||:!!:!!|||!.!:!!||||||||||||||| AsnLeuIleAlaTyrCysAsnLysLeuGluLysValPheAsnIleIleValLeuGlyGln 18269 : AACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGTTCAATATCATTGTTCTGGGGCAA : 18328 196 : ValLeuIlePheSerIleLeuIleCysLeuAspGlyTyrLeuMetLeuLeuValSerVal : 215 :!!|||!!:||||||!!:||||||||||||||||||!:!! !!!:|||:!!|||.!!:!! LeuLeuMetPheSerMetLeuIleCysLeuAspGlyPheGlnIleLeuMetValGlyMet 18329 : TTGTTAATGTTCAGCATGTTGATCTGTCTCGATGGATTTCAGATACTTATGGTTGGTATG : 18388 216 : Arg : 216 ||| Arg 18389 : AGA : 18393 vulgar: Lalb_14725 97 216 . KQ414828.1 18030 18393 + 309 M 43 129 G 0 6 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 18031 18393 309 + . gene_id 2 ; sequence Lalb_14725 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 18031 18393 . + . KQ414828.1 exonerate:protein2genome:local exon 18031 18393 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 18031 18393 309 + . alignment_id 2 ; Query Lalb_14725 ; Align 18031 98 129 ; Align 18166 141 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14725 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 274 Query range: 97 -> 217 Target range: 32795 -> 33152 98 : IlePheGlnThrSerCysMetIleMetTyrGlyIleGlyTyrLeuCysValAspAsnPhe : 117 ::! |||.!!! !! !:!! !... !|||:!: !!||||||||| ||||||... LeuThrGlnAlaLeuSerValTyrGlnValGlyValCysTyrLeuCysPheAspAsnIle 32796 : ctCACGCAGGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCTttgataacatt : 32853 118 : LeuCysIleThrAsnLeuGlnAlaAlaThrGlnPheArgIleLeuGlnTyrArgIleAla : 137 ... ||| !|||!!.!.!||| !|||||||||||||||||||||||||||||| PhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAla 32854 : tttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCC : 32913 138 : AsnIleArgLysAspAsnAspThrLysGluHisSerGlyIleSerArgSerLeuProAla : 157 |||:!: ! !:!!!:! ! !:!! |||..! !!:!! !||| ! !!! ! AsnValSerGlyLeuSerGluIleValLys---SerAsnAspAsnThrSerThrAlaGlu 32914 : AATGTGTCAGGTCTAAGCGAGATAGTGAAG---AGCAATGATAATACAAGCACGGCTGAA : 32970 158 : TyrHisAlaAspHisCysTyrAlaValPheLysAspCysIleLysGlnHisGlnAlaLeu : 177 ! :!!:!!!!: ! |||||| ! !||||||:!!||||||:!!||||||||||||||| LeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeu 32971 : TTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTa : 33030 178 : IleSerTyrCysArgLysValGluGluLeuPheThrLeuIleValLeuGlyGlnValLeu : 197 |||...:::|||... ::!||||||:!!||||||:!!||||||||||||||||||||| IleGluPheCysGluIleLeuGluGluValPheThrValIleValLeuGlyGlnValLeu 33031 : attgaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTA : 33090 198 : IlePheSerIleLeuIleCysLeuAspGlyTyrLeuMetLeuLeuValSerValArgLys : 217 !!:|||||||||:!!||||||!!!! !|||||| !:!:||||||||||||:!!..!::: MetPheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeuValSerIleGluArg 33091 : ATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGGTGAGTATCGAACgc : 33150 vulgar: Lalb_14725 97 217 . KQ414828.1 32795 33152 + 274 M 50 150 G 1 0 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32796 33152 274 + . gene_id 3 ; sequence Lalb_14725 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 32796 33152 . + . KQ414828.1 exonerate:protein2genome:local exon 32796 33152 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 32796 33152 274 + . alignment_id 3 ; Query Lalb_14725 ; Align 32796 98 150 ; Align 32946 149 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14725 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 250 Query range: 110 -> 215 Target range: 22755 -> 23067 111 : TyrLeuCysValAspAsnPheLeuCysIleThrAsnLeuGlnAlaAlaThrGlnPheArg : 130 ||||||||| ||| ...... ||| |||!!.!.!||| !||||||||| TyrLeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArg 22756 : TACCTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGT : 22813 131 : IleLeuGlnTyrArgIleAlaAsnIleArgLysAspAsnAspThrLysGluHisSerGly : 150 ||||||||||||||||||||||||:!: ! !:!!!:! ! !:!! |||.!! IleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLys---SerSer 22814 : ATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAA---AGCAGT : 22870 151 : IleSerArgSerLeuProAlaTyrHisAlaAspHisCysTyrAlaValPheLysAspCys : 170 !!:!! !||| ! !! !! :!!:!!!!: ! |||||| ! !||||||:!!||| GluAsnProSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCys 22871 : GAAAATCCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGC : 22930 171 : IleLysGlnHisGlnAlaLeuIleSerTyrCysArgLysValGluGluLeuPheThrLeu : 190 |||:!!||||||||||||||||||..!!:!||| !! !:!!||||||:!!||||||:!! IleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrVal 22931 : ATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTA : 22990 191 : IleValLeuGlyGlnValLeuIlePheSerIleLeuIleCysLeuAspGlyTyrLeuMet : 210 |||||||||||||||||||||!!:! !|||||||||||||||!!! !||||||! !:!: IleValLeuGlyGlnValLeuMetSerSerIleLeuIleCysPheIleGlyTyrGlnVal 22991 : ATCGTACTCGGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTA : 23050 211 : LeuLeuValSerVal : 215 ||||||||||||:!! LeuLeuValSerIle 23051 : CTCCTGGTGAGTATC : 23067 vulgar: Lalb_14725 110 215 . KQ414828.1 22755 23067 + 250 M 37 111 G 1 0 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22756 23067 250 + . gene_id 4 ; sequence Lalb_14725 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 22756 23067 . + . KQ414828.1 exonerate:protein2genome:local exon 22756 23067 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 22756 23067 250 + . alignment_id 4 ; Query Lalb_14725 ; Align 22756 111 111 ; Align 22867 149 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14725 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 243 Query range: 110 -> 215 Target range: 37898 -> 38210 111 : TyrLeuCysValAspAsnPheLeuCysIleThrAsnLeuGlnAlaAlaThrGlnPheArg : 130 ||||||||| ||| ...... ||| |||!!.!.!||| !||||||||| TyrLeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArg 37899 : TACCTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGT : 37956 131 : IleLeuGlnTyrArgIleAlaAsnIleArgLysAspAsnAspThrLysGluHisSerGly : 150 ||||||||||||||||||||||||:!: ! !:!!!:! ! !:!! |||.!! IleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLys---SerSer 37957 : ATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAA---AGCAGT : 38013 151 : IleSerArgSerLeuProAlaTyrHisAlaAspHisCysTyrAlaValPheLysAspCys : 170 !!:!! !||| ! !! !! :!!:!!!!: ! |||||| ! !||||||:!!||| GluAsnProSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCys 38014 : GAAAATCCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGC : 38073 171 : IleLysGlnHisGlnAlaLeuIleSerTyrCysArgLysValGluGluLeuPheThrLeu : 190 |||:!!||||||||||||||||||..!!:!||| !! !:!!||||||:!!||||||:!! IleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrVal 38074 : ATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTA : 38133 191 : IleValLeuGlyGlnValLeuIlePheSerIleLeuIleCysLeuAspGlyTyrLeuMet : 210 |||!.!|||||||||||||||!!:||||||||||||||||||!!!! !! !|||! ! IleAlaLeuGlyGlnValLeuMetPheSerIleLeuIleCysPheValValTyrGlnAla 38134 : ATTGCACTCGGACAAGTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCA : 38193 211 : LeuLeuValSerVal : 215 ||||||||||||:!! LeuLeuValSerIle 38194 : CTCCTGGTGAGTATC : 38210 vulgar: Lalb_14725 110 215 . KQ414828.1 37898 38210 + 243 M 37 111 G 1 0 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37899 38210 243 + . gene_id 5 ; sequence Lalb_14725 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37899 38210 . + . KQ414828.1 exonerate:protein2genome:local exon 37899 38210 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 37899 38210 243 + . alignment_id 5 ; Query Lalb_14725 ; Align 37899 111 111 ; Align 38010 149 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14725 [mRNA] [translate_table: standard] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 218 Query range: 101 -> 215 Target range: 10834 -> 11173 102 : SerCysMetIleMetTyrGlyIleGlyTyrLeuCysValAspAsnPheLeuCysIleThr : 121 ||| ! :!! !.!. |||||| !!|||!!!||| !!||||||.!!!!!||||||! ! SerGlyLeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMet 10835 : TCAGGACTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATG : 10892 122 : AsnLeuGlnAlaAlaThrGlnPheArgIleLeuGlnTyrArgIleAlaAsnIleArgLys : 141 !:!:!!!!. !::! !||||||||||||||||||||||||:!:.!!!!.:!: ... SerValHisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeu---Ser 10893 : AGCGTGCATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTG---TCC : 10949 142 : AspAsnAspThrLysGluHisSerGlyIleSerArgSerLeuProAlaTyrHisAlaAsp : 161 ||| .!. !:!! ! ... ...|||:!! !! ! !! !.!! ! AspValGlnTyrGlnIleSerGluLysAsnMetGluSerValLeuGluAspCysThrArg 10950 : GACGTACAATATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGT : 11009 162 : HisCysTyrAlaValPheLysAspCysIleLysGlnHisGlnAlaLeuIleSerTyrCys : 181 ...! !|||! ! !||||||..!! !:!!::!|||||||||.!!||||||..!|||! ! ArgSerTyrGluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyr 11010 : AGATCTTACGAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTAC : 11069 182 : ArgLysValGluGluLeuPheThrLeuIleValLeuGlyGlnValLeuIlePheSerIle : 201 ..!|||:!!|||.!.:!!!:!||| !|||:!!|||||||||||||||:!:||||||:!: GluLysLeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerVal 11070 : GAGAAGCTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTG : 11129 202 : LeuIleCysLeuAspGlyTyrLeuMetLeuLeuValSerVal : 215 |||||||||||| !||||||! !!!:||||||||||||:!! LeuIleCysLeuPheGlyTyrGlnIleLeuLeuValSerIle 11130 : TTAATTTGCCTCTTTGGTTATCAGATATTATTGGTTAGTATT : 11173 vulgar: Lalb_14725 101 215 . KQ414828.1 10834 11173 + 218 M 38 114 G 1 0 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10835 11173 218 + . gene_id 6 ; sequence Lalb_14725 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 10835 11173 . + . KQ414828.1 exonerate:protein2genome:local exon 10835 11173 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 10835 11173 218 + . alignment_id 6 ; Query Lalb_14725 ; Align 10835 102 114 ; Align 10949 141 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14729 [mRNA] [translate_table: standard] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 251 Query range: 96 -> 234 Target range: 4456 -> 4042 97 : PheGlnArgLeuPhePheGluMetGluGluPheCysLysHisAlaThrGluLysGluAsnAl : 117 !!.|||!:!|||.!! ||||||:!! ! !|||:!! |||! ! ! ! |||!..! LeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAs 4456 : TTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGA : 4396 118 : aValLeuGlnArgHisValAspArgTyrLysTyrValHisGlyValTyrThrLeuTrpCysP : 138 !|||!!!||||||:!!|||:!!!:!:!:... ::: ... !:!!! !|||! !! pValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheT 4395 : CGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTT : 4333 139 : heLeuThrThrIlePheValIleCysGlyProLeuTyrSerProGlnAlaPheProThrHis : 158 :!||||||.!!|||.!!:!!:!! !||| !||| !! ! !!.!. !!|||||||||:!! yrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPheProThrAsn 4332 : ACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACCAAC : 4273 159 : AlaLysTyrProPheProValGluGluGlnProLeuArgSerIleIlePhePheHisGlnSe : 179 ||| !|||||||||||||||.!. :!!|||||||||||||||||||||.!.|||||||| AlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHisGlnSe 4272 : GCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCACCAATC : 4210 180 : rLeuValGlyPheGlnAlaSerAlaGlyMetAlaIleAspAlaGlnValAlaLeuLeuLeuA : 200 |!!!||||||.!.|||..!:!!||| ! ::!!!::!!!.!! !||||||||||||! rPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeuLeuLeuL 4209 : GTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTGTTATTGC : 4147 201 : rgTyrAlaThrAlaArgPheGluIleLeuAlaMetLysLeuGluArgValGlnSerGluSer : 220 !!:!.!!||||||||||||||||||||| !! !:!!|||..!!.!|||.!...! ..! euPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAspIleGlu 4146 : TATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGATATCGAA : 4087 221 : GlnLeuAsnAlaCysIleLeuGluHisAlaArgLeuLeuArg : 234 !|||! ! ! !!!!: !:!!:!!:!!! !:!!! !||| ThrLeuIleLysSerMetLysLysTyrSerThrValArgArg 4086 : ACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: Lalb_14729 96 234 . LHQN01020543.1 4456 4042 - 251 M 138 414 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 4456 251 - . gene_id 1 ; sequence Lalb_14729 ; gene_orientation . LHQN01020543.1 exonerate:protein2genome:local cds 4043 4456 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4456 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 4456 251 - . alignment_id 1 ; Query Lalb_14729 ; Align 4457 97 414 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14724 [mRNA] [translate_table: standard] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 417 Query range: 0 -> 236 Target range: 5294 -> 4042 1 : MetPheAspLysAlaThrProGluLysAlaValAsnPheAlaArgLeuAlaValCysLeuAs : 21 |||!!. ! ! !!!:!||||||!:!|||:!!::!.!!!.!!.!:!! !..!..!!!!!. MetLeuLysTyrProSerProGluArgAlaIleSerLeuValHisValIleThrAlaPheTh 5294 : ATGTTGAAATATCCGAGTCCAGAAAGAGCCATCTCCCTTGTCCACGTTATCACGGCTTTTAC : 5234 22 : nMetTyrTrpProLeuGluProThrThrAsnLysPheTrpArgValLeuTyrAsnValLeuL : 42 ! ! !||||||||| !!|||.!!!.!|||! ! ! !:!!! !!:!!!.:!!|||! rCysCysTrpProLeuProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuA 5233 : CTGCTGTTGGCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGA : 5171 43 : ysAlaLeuSerLeuIleCysThrIleAlaValPheLeuProLeuLeuTyrSerValTyrLeu : 62 :!:!!!!! !|||:!! !.!!:!!!.!:!!||||||||||||||||||:!! ||| rgSerPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAla------Leu 5170 : GATCTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCT------CTG : 5117 63 : AsnLeuLysArgAsnAspTyrThrHisPheSerLysAlaAlaCysMetThrLeuAlaSerIl : 83 :!!:!! ! ||||||||| ! !:!! !!:!!||||||||||||:!!||||||||| :: HisValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLeuVa 5116 : CACGTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCctcgt : 5054 84 : eHisValMetGlyGlnAlaAlaValSerPhePheGlnHisAspGlnLeuGln >>>> Tar : 101 :...:::... |||..! !|||!!!.!! !|||:!!|||!!.!!!||| lGlnIlePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGln++ 5053 : gcaaatatttttccagacTTTCGTTTGCATCGGCCAATACGATCATTTTCAGgt........ : 4998 102 : get Intron 1 >>>> TyrLeuValGluGluMetValAspTyrPheArgAsnMetLysP : 115 550 bp ! |||:!!||||||||| ! !! !! !..!!.. |||| ++LysLeuIleGluGluMetLysIleCysCysGluThrAlaLysP 4997 : .................agAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAAC : 4408 116 : roTyrGluArgGluValTyrGlnArgTyrMetArgLysTyrSerProPheTyrGlyValSer : 135 |||||||||||!!:|||!:!|||||||||:!:!.!|||:!:||| |||||| ... !! roTyrGluArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCys 4407 : CATACGAAAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGT : 4348 136 : ThrGlyTrpAsnAlaLeuSerAlaPhePheValMetIleGlyProPheValThrGlyGlnPr : 156 :!!..!||| ! !|||!!!|||.!..!!:!!:!::!!||| !.!.:!!! !..!.!.|| SerSerTrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspPr 4347 : TCGTCATGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCC : 4285 157 : oPheProMetAlaAlaGluTyrProPheProValAspHisGluIleValArgSerThrIleT : 177 |||||||! !|||! !|||||||||||||||:!! !||| !:!!||||||! !|||! oPheProThrAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIleP 4284 : TTTTCCAACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTT : 4222 178 : yrLeuGlnHisSerTyrValCysValGlnCysMetCysThrLeuAsnSerAsnMetMetAla : 197 :!:!!!!.!!.|||!:!||| !!:!!|||||| ... ! !!:!! !|||:!!:!::!! heMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSer 4221 : TTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCT : 4162 198 : AlaIleLeuIleLeuPheAlaAlaGlyArgPheGluIleLeuMetIleAspLeuArgAlaAl : 218 |||:!:|||:!:||||||.!!.!!!..||||||||||||||||||! !!:|||||| !!. AlaLeuLeuLeuLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnVa 4161 : GCACTGTTATTGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGT : 4099 219 : aSerSerIleAspAspLeuArgAsnCysIleGluGlnCysTyrValIleArgLys : 236 !!:!..!|||!!: |||! !!!. !!!!::!!:!!! !! ..!:!:|||!:! lAsnAspIleGluThrLeuIleLysSerMetLysLysTyrSerThrValArgArg 4098 : CAATGATATCGAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: Lalb_14724 0 236 . LHQN01020543.1 5294 4042 - 417 M 59 177 G 2 0 M 39 117 5 0 2 I 0 546 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 5294 417 - . gene_id 1 ; sequence Lalb_14724 ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 5001 5294 . - . LHQN01020543.1 exonerate:protein2genome:local exon 5001 5294 . - . insertions 0 ; deletions 2 LHQN01020543.1 exonerate:protein2genome:local splice5 4999 5000 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 4451 5000 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 4451 4452 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 4043 4450 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4450 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 5294 417 - . alignment_id 1 ; Query Lalb_14724 ; Align 5295 1 177 ; Align 5118 62 117 ; Align 4451 101 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14724 [mRNA] [translate_table: standard] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 195 Query range: 304 -> 374 Target range: 1711 -> 1425 305 : SerGluThrAlaValArgAspValTyrGluAlaLysTrpTyrAspGlnAsnValArgValGl : 325 ||||||!.! !:!!!:!! :!!||||||:!!|||||||||!!:!:!::::::::::::|| SerGluAsnIleMetGlnGlyIleTyrGluSerLysTrpTyrGluArgSerLeuLysIleGl 1711 : AGCGAGAACATAATGCAAGGAATATATGAATCAAAATGGTACGAACGAtctctaaaaattca : 1651 326 : nLysThrValLeuGlnMetLeuIleProGlnLysProIleValIleSerLeuArgPheValM : 346 ||||::!..!:!!! ||||||! !||||||...|||:!:..!:!!!.!:!!!:!! !:!!! nLysSerThrValLeuMetLeuThrProGlnSerProValThrValLysIleLysCysLeuI 1650 : aaagtcTACAGTCCTCATGTTGACTCCTCAATCTCCGGTGACAGTAAAAATCAAGTGCCTCA : 1588 347 : etAlaAlaLeuSerLeuAsnTyrTyrCysSer >>>> Target Intron 1 >>>> T : 357 !: !!!..||||||||||||:::||||||||| 76 bp | leProValLeuSerLeuAsnPheTyrCysSer++ ++T 1587 : TTCCAGttctttctttgaatttttactgCTCGgt.........................agT : 1479 358 : yrAlaSerAsnAlaPheSerLeuPheThrAlaLeuArgValValMetGluAsn : 374 ||!.!||||||!.!||||||||||||||||||||||||:!!!.!||| !||| yrValSerAsnValPheSerLeuPheThrAlaLeuArgIleAlaMetIleAsn 1478 : ACGTCTCAAATGTGTTCTCTTTATTTACCGCTTTAAGAATAGCCATGATAAAT : 1426 vulgar: Lalb_14724 304 374 . LHQN01020543.1 1711 1425 - 195 M 52 156 5 0 2 I 0 72 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 1426 1711 195 - . gene_id 2 ; sequence Lalb_14724 ; gene_orientation + LHQN01020543.1 exonerate:protein2genome:local cds 1556 1711 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1556 1711 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local splice5 1554 1555 . - . intron_id 1 ; splice_site "GT" LHQN01020543.1 exonerate:protein2genome:local intron 1480 1555 . - . intron_id 1 LHQN01020543.1 exonerate:protein2genome:local splice3 1480 1481 . - . intron_id 0 ; splice_site "AG" LHQN01020543.1 exonerate:protein2genome:local cds 1426 1479 . - . LHQN01020543.1 exonerate:protein2genome:local exon 1426 1479 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 1426 1711 195 - . alignment_id 2 ; Query Lalb_14724 ; Align 1712 305 156 ; Align 1480 357 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1203 Query range: 8 -> 409 Target range: 194120 -> 198627 9 : ValAspGluArgThrLeuPheGlnAsnPheAsnTyrLysSerAspThrGluTyrValM : 28 ::: ::::::::: !!:!!::||| !!|||||||||! !||||||||||||!.!: IleAlaLysLysSerAsnTyrArgAsnValAsnTyrLysLeuAspThrGluTyrAlaV 194121 : atcgcgaagaaatcgAATTACCGCAACGTCAATTACAAATTGGACACCGAGTACGCTG : 194178 29 : etArgIleAlaLysIleLeuLeuSerProValGlyValTrpProLeuTyrArgAsnAs : 47 !:|||:!!|||||| ||||||!!!|||:!!|||:!!|||||| |||.!.|| alArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpPro------ArgGluAs 194179 : TTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCA------AGGGAGGA : 194229 48 : pThrIleLeuAspLysIleLysTyrPhePheHisThrSerPheValPheSerLeuMet : 66 |:!!:!!! !|||!:!:!!::! ||| !!!.|||.!! ! ||||||:!!|||||| pSerLeuArgAspArgValArgLeuPheAlaGlnThrGlyValValPheAlaLeuMet 194230 : TTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTTCGCTTTGATG : 194286 67 : GlyPheLeuLeuValProHisValIleTyrThrPhePheAspAlaGluAspLeuThrA : 86 !!||||||||||||||||||||||||||||||!:!||||||..!||||||||||||| CysPheLeuLeuValProHisValIleTyrThrTyrPheAspCysGluAspLeuThrA 194287 : TGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAGGATCTGACGA : 194346 87 : rgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuGlyIleIleLysPheTr : 105 |||||||||||||||||||||||||||||||||||||||||!.!|||||||||||||| rgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleIleLysPheTr 194347 : GGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCATCAAGTTCTG : 194403 106 : pThrMetIleIleAsnArgAspGluIleSerCysCysLeuArgGlnIleGluIleGln : 124 ||||||||||:!:|||||| ! ||||||!!!! !||||||! !:!!!!:|||! ||| pThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGluMetGluThrGln 194404 : GACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGATGGAGACGCAG : 194460 125 : TyrArgAspValGluCysGluGluAspArgLeuValMetValArgAsnAlaLysLeuG : 144 ||||||||||||||||||||||||||||||! !||||||..!!.! !||||||:!!| TyrArgAspValGluCysGluGluAspArgGlnValMetThrAsnCysAlaLysIleG 194461 : TACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGCGCGAAAATCG : 194520 145 : lyArgGlnPheThrIleMetTyrLeuGlyLeuLeuTyrGlyGlyAlaLeuProTyrHi : 163 ||||| ||||||! !:!!||||||||||||! !||||||||||||||||||||||| lyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHi 194521 : GCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTTTGCCGTACCA : 194577 164 : sIleIleMetProLeuValAlaGluArgIleIleLysGluAspAsnThrThrGlnLeu : 182 |||||||:!:||||||:!!:!!|||||||||:!!||||||||||||!:!||||||:!! sIleIleLeuProLeuMetSerGluArgIleValLysGluAspAsnSerThrGlnIle 194578 : CATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAACAGTACTCAGATA : 194634 183 : ProLeuProTyrLeuSerAspTyrIlePhePheValValGluAsnSerProValTyrG : 202 ||||||||||||||||||:!!|||:!!||||||!.!:!!|||:!!||||||:!!|||| ProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAspSerProIleTyrG 194635 : CCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGACTCGCCGATTTACG : 194694 203 : luIlePhePheValThrGlnIleLeuPheSerThrLeuIleLeuSerThrAsnCysGl : 221 ||||| ||||||:!!|||||||||.!!|||!:!:!!|||||||||||||||||||| luIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuSerThrAsnCysGl 194695 : AGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGTCGACGAATTGTGG : 194751 222 : yValTyrSerLeuIleAlaThrCysValMetHisAlaCysCysLeuPheGluValAla : 240 |:!!|||||||||:!!|||||| !:!!||||||..!||| !!||||||||||||.!! yIleTyrSerLeuValAlaThrIleIleMetHisCysCysGlyLeuPheGluValThr 194752 : GATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTTGTTCGAAGTGACC : 194808 241 : ArgArgHisIleGluThrValMetValAspGlyThrAspGlyLeuHisGluArgPheG : 260 !!!|||...!!:||||||:!! ||| ! ! ! ! ! !:!!!..! |||.!! SerArgArgMetGluThrIleSerValProThrGlyLysAspIleArgGlyArgLeuA 194809 : AGCAGAAGGATGGAGACTATTTCTGTGCCCACTGGGAAGGATATTCGGGGTAGACTTA : 194868 261 : lyHisIleIleAlaGlnHisThrGlnAlaLeu{Ar} >>>> Target Intron 1 : 271 !! !!:!!:!! ! ||| !:!!|||:!!{!:} 1391 bp rgAspValValGlnPheHisLeuLysAlaIle{Ly}++ 194869 : GGGACGTCGTTCAGTTTCATCTGAAAGCAATT{AA}gt.................... : 194905 272 : >>>> {g}PheSerLysMetIleGluLysSerLeuAsnIleValPheLeuSerGlu : 287 {!}|||:!!:!!||||||||||||:!!|||||||||||||||||||||||| ++{s}PheAlaGluMetIleGluLysAlaLeuAsnIleValPheLeuSerGlu 194906 : .....ag{a}tTCGCTGAAATGATCGAGAAAGCACTGAACATCGTGTTTCTATCAGAG : 196340 288 : MetValGlyAsnThrIleIleIleCysPheLeuGluTyrGlyValLeuArg >>>> : 305 |||:!!||| !|||||||||||||||||||||||||||||||||:!! ! MetLeuGlyCysThrIleIleIleCysPheLeuGluTyrGlyValIleVal++ 196341 : ATGCTTGGCTGCACTATCATCATATGTTTCCTGGAATACGGTGTAATCGTGgt..... : 196396 306 : Target Intron 2 >>>> GluTrpGluAspAsnGlnIlePheGlyThrIleIle : 316 65 bp !!:|||! |||:!!:!!! !.!!.!!! !!!:! ++AspTrpAlaAspHisLysThrLeuSerMetMetThr 196397 : ....................agGATTGGGCCGATCACAAGACACTCAGCATGATGACG : 196492 317 : TyrLeuIleLeuAlaIleSerIleLeuValAsnValPheIleLeuSerSerIleGlyA : 336 |||!!!:!!||| !! !||||||!!!|||||||||||||||:!!|||! !||||||| TyrPheValLeuMetThrSerIlePheValAsnValPheIleIleSerPheIleGlyA 196493 : TACTTCGTTCTGATGACATCGATATTCGTGAACGTGTTCATAATCTCGTTCATCGGTG : 196552 337 : spArgLeuLysGluGlu >>>> Target Intron 3 >>>> SerGluLysIle : 345 |||||||||||:!!! 82 bp ||||||!:!:!! spArgLeuLysGlnVal++ ++SerGluArgVal 196553 : ATCGTCTTAAACAAGTggt.........................agAGCGAAAGAGTA : 196661 346 : GlyGluAlaSerTyrPheIleAsnTrpTyrAlaLeuProAlaLysAsnMetSerAsnL : 365 ||||||.!!|||||||||!!: ||||||! !||||||! ! ! !.!|||: GlyGluThrSerTyrPheMetProTrpTyrAspLeuProAspAspLeuAlaLysAsnI 196662 : GGCGAAACGTCGTACTTCATGCCGTGGTACGATCTTCCGGACGATTTAGCCAAGAATA : 196721 366 : euIleMetMetMetValArgSerAsnArgSerSerThrLeuThrAlaGlyLysIlePh : 384 !!! !! !!!:!!::!!|||:!!!:!!.! !!|||!:!|||:!!!.!!.!|||:!:|| leArgThrIleIleLeuArgAlaSerHisProSerSerLeuSerGlyAlaLysLeuPh 196722 : TAAGAACGATCATACTAAGAGCCAGTCATCCGTCAAGTTTGTCTGGCGCCAAGTTGTT : 196778 385 : eAspIleSerLeuGlnGlyPheSerAsp >>>> Target Intron 4 >>>> V : 394 ||||:!!|||||||||!.!|||!!!||| 1772 bp | eAspLeuSerLeuGlnAlaPheCysAsp++ ++V 196779 : CGATCTTTCGCTTCAAGCATTTTGCGACgt.........................agG : 198580 395 : alCysLysThrSerAlaAlaTyrPheAsnPheIleArgMetIleThr : 409 ||||||||||||||||||||||||||||||||:::::: !!:||| alCysLysThrSerAlaAlaTyrPheAsnPheLeuGlnAlaMetThr 198581 : TTTGCAAAACTTCTGCGGCctacttcaattttctacaagCAATGACA : 198627 vulgar: CbirOr3 8 409 . KQ414889.1 194120 198627 + 1203 M 34 102 G 2 0 M 226 678 S 0 2 5 0 2 I 0 1387 3 0 2 S 1 1 M 33 99 5 0 2 I 0 61 3 0 2 M 37 111 5 0 2 I 0 78 3 0 2 M 52 156 5 0 2 I 0 1768 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194121 198627 1203 + . gene_id 1 ; sequence CbirOr3 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 194121 194902 . + . KQ414889.1 exonerate:protein2genome:local exon 194121 194902 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 194903 194904 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 194903 196293 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 196292 196293 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 196294 196393 . + . KQ414889.1 exonerate:protein2genome:local exon 196294 196393 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 196394 196395 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 196394 196458 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 196457 196458 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 196459 196569 . + . KQ414889.1 exonerate:protein2genome:local exon 196459 196569 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 196570 196571 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 196570 196651 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 196650 196651 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 196652 196807 . + . KQ414889.1 exonerate:protein2genome:local exon 196652 196807 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 196808 196809 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 196808 198579 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 198578 198579 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 198580 198627 . + . KQ414889.1 exonerate:protein2genome:local exon 198580 198627 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194121 198627 1203 + . alignment_id 1 ; Query CbirOr3 ; Align 194121 9 102 ; Align 194223 45 678 ; Align 196295 272 99 ; Align 196459 305 111 ; Align 196652 342 156 ; Align 198580 394 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 294 Query range: 16 -> 276 Target range: 221351 -> 222143 17 : AsnPheAsnTyrLysSerAspThrGluTyrValMetArgIleAlaLysIleLeuLeuS : 36 .!.!:!:!!||||||!!!:!!..!:!!! !:!!!:!:!:::!::: :!!|||! GluTyrAspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuL 221352 : GAATACGATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGA : 221409 37 : erProValGlyValTrpProLeuTyrArgAsnAspThrIleLeuAspLysIleLysTy : 55 .!|||:!!|||||||||||| !! !||| !:!!! :!!!!:!:! ! || ysProIleGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTy 221410 : AGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTA : 221466 56 : rPhePheHisThrSerPheValPheSerLeuMetGlyPheLeuLeuValProHisVal : 74 |!::.!. !.! ! !! !!:!||||||!!: !||||||||||||||| ! ! rTrpLeuIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSer 221467 : CTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGC : 221523 75 : IleTyrThrPhePheAspAlaGluAspLeuThrArgTyrMetLysValIleAlaAlaG : 94 :!!|||..!.!!.!!!!:!.!||||||:!! !!.! !!:|||:!!:!:!.! !! LeuTyrValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProL 221524 : CTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGT : 221583 95 : lnValPheSerLeuLeuGlyIleIleLysPheTrpThrMetIleIleAsnArgAspGl : 113 ! !|||!!!:!!:!!!.!.!!:!!|||!:! !:!!|||:!! !!..!:!!!! euSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAs 221584 : TGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGA : 221640 114 : uIleSerCysCysLeuArgGlnIleGluIleGlnTyrArgAspValGluCysGluGlu : 132 :||| !! |||:!!..!!::|||||| .!.!::!:!:!!:!! ! !...:!! pIleArgGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLys 221641 : CATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAG : 221697 133 : AspArgLeuValMetValArgAsnAlaLysLeuGlyArgGlnPheThrIleMetTyrL : 152 |||!:! !:!!|||:!!..!||||||! !!!||||||!:!!!.! !!!:!!:! ! AspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysT 221698 : GATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCA : 221757 153 : euGlyLeuLeuTyrGlyGlyAlaLeuProTyrHisIleIleMetProLeuValAlaGl : 171 ! !!!!:!!|||.!!||| ::: |||:::||| !!!:|||!!! !!.!! hrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGl 221758 : CATTTTTCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGG : 221814 172 : uArgIleIleLysGluAsp<->AsnThrThrGlnLeuProLeuProTyrLeuSerAsp : 189 !:!||| ! !:!!||| |||...||| :::|||:!! !!:!! !! !... yLysIleProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSer 221815 : TAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCG : 221871 190 : TyrIlePhePheValValGluAsnSerProValTyrGluIlePhePheValThrGlnI : 209 .!!.!! !!! !..!..! !!||||||||| !!||||||.!.||| ! !|||| ArgPheIleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnI 221872 : AGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAA : 221931 210 : leLeuPheSerThrLeuIleLeuSerThrAsnCysGlyValTyrSerLeuIleAlaTh : 228 ||:!! .!!.!!|||!!:! !|||! !!..! !.!!.!! !||||||:!!|||! leMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMe 221932 : TTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTAT : 221988 229 : rCysValMetHisAlaCysCysLeuPheGluValAlaArg<-><-><->ArgHisIle : 244 !! !!.!:!!||||||||| !!! !.!.:!!||| !! ! !:!|||:!: tPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeu 221989 : GTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTG : 222045 245 : GluThrValMetValAspGlyThrAspGlyLeuHisGluArgPheGlyHisIleIleA : 264 !.!! ! !!.!||| ! !:!!..!:!! !!..!|||.!.!.! ! |||:!: IleAsnGlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValA 222046 : ATCAACGGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGA : 222105 265 : laGlnHisThrGlnAlaLeuArgPheSerLysMetIle : 276 !||||||..!!:! !|||!:!!:! !::: ||| snGlnHisValArgIleLeuGlnTyrValArgCysIle 222106 : ATCAACACGTTCGAATATTGCAGTATGTACGTTGTATC : 222143 vulgar: CbirOr3 16 276 . KQ414889.1 221351 222143 + 294 M 161 483 G 0 3 M 64 192 G 0 9 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221352 222143 294 + . gene_id 2 ; sequence CbirOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221352 222143 . + . KQ414889.1 exonerate:protein2genome:local exon 221352 222143 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221352 222143 294 + . alignment_id 2 ; Query CbirOr3 ; Align 221352 17 483 ; Align 221838 178 192 ; Align 222039 242 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 220 Query range: 18 -> 254 Target range: 278555 -> 279272 19 : AsnTyrLysSerAspThrGluTyrValMetArgIleAlaLysIleLeuLeuSerProV : 38 !..!::!!.!!!||| ! !||| !:!:!:!!!: !::: !!!|||!.!|||: ThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProI 278556 : ACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGA : 278613 39 : alGlyValTrpProLeuTyrArgAsnAspThrIleLeuAspLysIleLysTyrPhePh : 57 !!||||||||||||||| !! ! !! |||! !|||!!:||||||!..! ! ! ! leGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValVa 278614 : TTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGT : 278670 58 : eHisThrSerPheValPheSerLeuMetGlyPheLeuLeuValProHisValIleTyr : 76 !! !.!!! !.!! !! !! !|||!!:|||||||||||||||||| !!.!:!:! ! lLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCys 278671 : CCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGC : 278727 77 : ThrPhePheAsp<->AlaGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnV : 95 ||| ! .!!||| .!!! |||||| !! ! ! !!:|||:!!|||!.! !!! ! ThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuS 278728 : ACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAA : 278787 96 : alPheSerLeuLeuGlyIleIleLysPheTrpThrMetIleIleAsnArgAspGluIl : 114 !|||!!! !:!!!.!! ||||||!:!!::! !:!:!!: ..! !!! !:!!|| erPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIl 278788 : GTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGAT : 278844 115 : eSerCysCysLeuArgGlnIleGluIleGlnTyrArg<-><-><->AspValGluCys : 130 |.!! |||:!!!.!.!.|||...! .!.!:: ! ... !... eGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGln 278845 : CGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaa : 278901 131 : GluGluAspArgLeuValMetValArgAsnAlaLysLeuGlyArgGlnPheThrIleM : 150 ||||||:::||| :::||| ! !!:!|||!:!:!!||||||...!!..!!|||. GluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIleP 278902 : gaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCT : 278961 151 : etTyrLeuGlyLeuLeuTyrGlyGlyAlaLeuProTyrHisIleIleMetProLeuVa : 169 !. ! !|||!!!:!!|||..!|||!.!:!! !||| ! !:!:||||||||| ! heSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPh 278962 : TCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTT : 279018 170 : lAlaGluArgIleIleLysGluAspAsnThrThrGlnLeuProLeuProTyrLeuSer : 188 !|||! !|||! ! |||||| !||| ! ! !!! ! !!!:!! !! ! eAlaValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIle 279019 : CGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATC : 279075 189 : AspTyrIlePhePheValValGluAsnSerProValTyrGluIlePhePheValThrG : 208 !! ! !.!!.!!! ! !...!.!|||||| !!:!|||||| ! !!! !| TyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetG 279076 : TATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGC : 279135 209 : lnIleLeuPheSerThrLeuIleLeuSerThrAsnCysGlyValTyrSerLeuIleAl : 227 || !||| !:!! !:!!:!!! !|||..!!.! !|||!.!! !||||||||||| lnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAl 279136 : AATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGC : 279192 228 : aThrCysValMetHisAlaCysCysLeuPheGluValAlaArgArgHisIleGluThr : 246 |..!! !|||||||||!.!||| ! ! !|||..!:!! ! !! ! ! :!:!!:! ! aValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLys 279193 : TGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAG : 279249 247 : ValMetValAspGlyThrAspGly : 254 :!::!!||||||..! ! ||| ---LeuIleAspGlyValLysGly 279250 : ---CTCATCGACGGAGTGAAAGGG : 279272 vulgar: CbirOr3 18 254 . KQ414889.1 278555 279272 + 220 M 62 186 G 0 3 M 46 138 G 0 9 M 120 360 G 1 0 M 7 21 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278556 279272 220 + . gene_id 3 ; sequence CbirOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278556 279272 . + . KQ414889.1 exonerate:protein2genome:local exon 278556 279272 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278556 279272 220 + . alignment_id 3 ; Query CbirOr3 ; Align 278556 19 186 ; Align 278745 81 138 ; Align 278892 127 360 ; Align 279252 248 21 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 219 Query range: 20 -> 218 Target range: 294672 -> 295269 21 : LysSerAspThrGluTyrValMetArgIleAlaLysIleLeuLeuSerProValGlyV : 40 !:!!:!|||..!! ! !! !:!:!:! !..!::!! ||||||!.!|||:!!|||: ArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyL 294673 : AGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTC : 294730 41 : alTrpProLeu<->TyrArgAsnAspThrIleLeuAspLysIleLysTyrPhePheHi : 58 !!||||||||| |||!!!:!! !!:!! !|||:!!|||:!! ! .!..!!! euTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLe 294731 : TTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCT : 294787 59 : sThrSerPheValPheSerLeuMetGlyPheLeuLeuValProHisValIleTyrThr : 77 ! !:!!!:: ! ! ! !:!: !|||:!!||||||||| !! ! !!:! ! uIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCys 294788 : GATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGT : 294844 78 : PhePheAspAlaGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheS : 97 ! ||| !!!..::::::::: ||||||:!!:!:!.! !! !:!!!:!| ValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrS 294845 : GTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACT : 294904 98 : erLeuLeuGlyIleIleLysPheTrpThrMetIleIleAsnArgAspGluIleSerCy : 116 ||:!!|||..!!!::!!!:!!:! ! !:!::!!:!:!!.! ! !! !.!!!.! erMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHi 294905 : CTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCA : 294961 117 : sCysLeuArgGlnIleGluIleGlnTyrArgAspValGluCysGluGluAspArgLeu : 135 !|||:!!..!.!.||||||! !.!.!::!:! :!!!!: ! !||| !!||| ! sCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAla 294962 : TTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCG : 295018 136 : ValMetValArgAsnAlaLysLeuGlyArgGlnPheThrIleMetTyrLeuGlyLeuL : 155 :!!|||:!!!:!||||||! !:!! !!:!::!.!.|||:!! !:! ! !:!!: IleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleI 295019 : ATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAA : 295078 156 : euTyrGlyGlyAlaLeuProTyrHisIleIleMetProLeuValAlaGluArgIleIl : 174 !!|||.!!..!|||:!! !!|||||| !|||:::|||... :::... :!: leTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGl 295079 : TCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGA : 295135 175 : eLysGluAspAsnThrThrGlnLeuProLeuProTyrLeuSerAspTyrIlePhePhe : 193 !!.:!! ! |||!.!||| ! ! !!|||||| !! !.!! !! ! :!!||| ! uAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheVal 295136 : GAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTA : 295192 194 : ValValGluAsnSerProValTyrGluIlePhePheValThrGlnIleLeuPheSerT : 213 ! !!.! ! ::!||||||..!|||||||||.!. ..! !! .!!:!!!:!||| AspAlaTyrSerSerProThrTyrGluIleIleArgThrHisLeuPheValTyrSerP 295193 : GACGCTTATTCCAGTCCTACCTACGAGATCATAAGAACTCATCTCTTTGTTTACTCGT : 295252 214 : hrLeuIleLeuSerThr : 218 !!!!:!! !!.!||| hePheValAsnLysThr 295253 : TCTTCGTCAACAAAACT : 295269 vulgar: CbirOr3 20 218 . KQ414889.1 294672 295269 + 219 M 23 69 G 0 3 M 175 525 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294673 295269 219 + . gene_id 4 ; sequence CbirOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294673 295269 . + . KQ414889.1 exonerate:protein2genome:local exon 294673 295269 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294673 295269 219 + . alignment_id 4 ; Query CbirOr3 ; Align 294673 21 69 ; Align 294745 44 525 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 218 Query range: 18 -> 239 Target range: 226909 -> 227575 19 : AsnTyrLysSerAspThrGluTyrValMetArgIleAlaLysIleLeuLeuSerProV : 38 :!!|||:!!..! !! !.!. !!!:!:!:!: !::: ||||||!.!|||: AspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProL 226910 : GACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCAC : 226967 39 : alGlyValTrpProLeuTyrArgAsnAspThrIleLeuAspLysIleLysTyrPhePh : 57 !!|||:!!||||||! !! |||!!...!:!! !:!!! !:! ! ! !!::!! euGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLe 226968 : TCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTT : 227024 58 : eHisThrSerPheValPheSerLeuMetGlyPheLeuLeuValProHisValIleTyr : 76 . !! !.!! !!:!:!!||||||.!!||| !|||||| !! !! !:!:||| uMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyr 227025 : GATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTAC : 227081 77 : ThrPhePheAspAlaGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValP : 96 ..! !!.!.!!:!.!:!!! ! ! !!.! :!!|||:!!|||!.! !!..! !| ValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerP 227082 : GTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCT : 227141 97 : heSerLeuLeuGlyIleIleLysPheTrpThrMetIleIleAsnArgAspGluIleSe : 115 ||! ! !:!!..!:!!:!!|||!:!! ! !:!!! .!!:!!..!|||!!:||| hePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLe 227142 : TCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCT : 227198 116 : rCysCysLeuArgGlnIleGluIleGlnTyrArgAspValGluCysGluGluAspArg : 134 ! |||:!!..!!:!|||:!! .!.!::!:!:!!:!!..!! ! !||||||||| uGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArg 227199 : CGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGA : 227255 135 : LeuValMetValArgAsnAlaLysLeuGlyArgGlnPheThrIleMetTyrLeuGlyL : 154 !|||||||||! ! !!||| ! ! !||||||:!!!!.! !! !!!:! ! ! !! AsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPheP 227256 : AACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTT : 227315 155 : euLeuTyrGlyGlyAlaLeuProTyrHisIleIleMetProLeuValAlaGluArgIl : 173 !!:!!!:!...... ::: ::::::|||:!!:!:|||:!! !|||! !!!!:! heValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerVa 227316 : TCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGT : 227372 174 : eIleLysGluAsp<->AsnThrThrGlnLeuProLeuProTyrLeuSerAspTyrIle : 191 ! !! !|||||| ||| !!:! ! :!!! !:!!|||!:!! !! ! ! ||| lAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIle 227373 : TGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATC : 227429 192 : PhePheValValGluAsnSerProValTyrGluIlePhePheValThrGlnIleLeuP : 211 .!! !! !|||... !!|||||| !! !!|||||||||||| !..!|||.!!:!! IleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValT 227430 : ATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAA : 227489 212 : heSerThrLeuIleLeuSerThrAsnCysGlyValTyrSerLeuIleAlaThrCysVa : 230 .!!! !:!!:!:! !.!!..!!..! !.!!.!! !|||:!! !||| ! !!. hrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAl 227490 : CAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGC : 227546 231 : lMetHisAlaCysCysLeuPheGluVal : 239 !:!:||||||||| !!! !.!.|||||| aValHisAlaCysGlyGlnMetGluVal 227547 : GGTTCATGCTTGCGGTCAGATGGAGGTG : 227575 vulgar: CbirOr3 18 239 . KQ414889.1 226909 227575 + 218 M 159 477 G 0 3 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226910 227575 218 + . gene_id 5 ; sequence CbirOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226910 227575 . + . KQ414889.1 exonerate:protein2genome:local exon 226910 227575 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226910 227575 218 + . alignment_id 5 ; Query CbirOr3 ; Align 226910 19 477 ; Align 227390 178 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 218 Query range: 18 -> 254 Target range: 284502 -> 285219 19 : AsnTyrLysSerAspThrGluTyrValMetArgIleAlaLysIleLeuLeuSerProV : 38 !..!:: ! !!!||| ! !||| !:!:!:!!!: !::: !!!|||!.!|||: ThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProI 284503 : ACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGA : 284560 39 : alGlyValTrpProLeuTyrArgAsnAspThrIleLeuAspLysIleLysTyrPhePh : 57 !!||||||||||||||| !! ! !! |||! !|||!!:||||||!..! ! ! ! leGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValVa 284561 : TTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGT : 284617 58 : eHisThrSerPheValPheSerLeuMetGlyPheLeuLeuValProHisValIleTyr : 76 !! !.!!! !.!! !! !! !|||!!:|||||||||||||||||| !!.!:!:! ! lLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCys 284618 : CCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGC : 284674 77 : ThrPhePheAsp<->AlaGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnV : 95 ||| ! .!!||| .!!! |||||| !! ! ! !!:|||:!!|||!.! !!! ! ThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuS 284675 : ACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGA : 284734 96 : alPheSerLeuLeuGlyIleIleLysPheTrpThrMetIleIleAsnArgAspGluIl : 114 !|||!!!:!!:!!!.! ||||||!:!!::! !:!:||| ..! !!! !:!!|| erPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIl 284735 : GTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGAT : 284791 115 : eSerCysCysLeuArgGlnIleGluIleGlnTyrArg<-><-><->AspValGluCys : 130 |.!! |||:!!!:!.!.|||... .!.!:: ! ... !... eGlyGlnCysValLysAspIleArgAlaAspTrpSerLeuThrLeuSerHisSerGln 284792 : CGGCCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaa : 284848 131 : GluGluAspArgLeuValMetValArgAsnAlaLysLeuGlyArgGlnPheThrIleM : 150 ||||||:::||| :::||| ! !!:!|||!:!:!!||||||...!!..!!|||. GluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIleP 284849 : gaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCT : 284908 151 : etTyrLeuGlyLeuLeuTyrGlyGlyAlaLeuProTyrHisIleIleMetProLeuVa : 169 !.! ! !|||!!!:!!|||..!|||!.!!!! !||| !! :!:||||||||| heCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCy 284909 : TCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTG : 284965 170 : lAlaGluArgIleIleLysGluAspAsnThrThrGlnLeuProLeuProTyrLeuSer : 188 !.!!! !|||! ! |||||| !||| ! ! !!! ! !!!:!! !! ! sThrValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIle 284966 : CACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATC : 285022 189 : AspTyrIlePhePheValValGluAsnSerProValTyrGluIlePhePheValThrG : 208 !! ! !.!!.!!! ! !...!.!|||||| !!:!|||||| ! !!! !| TyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetG 285023 : TATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGC : 285082 209 : lnIleLeuPheSerThrLeuIleLeuSerThrAsnCysGlyValTyrSerLeuIleAl : 227 || !||| !:!! !:!!|||! !|||..!!.! !|||!.!! !|||||| !|| lnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAl 285083 : AATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGC : 285139 228 : aThrCysValMetHisAlaCysCysLeuPheGluValAlaArgArgHisIleGluThr : 246 |..!! !|||||||||!.!||| ! ! !|||..!:!! ! !! ! ! :!:!!:! ! aValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLys 285140 : TGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAG : 285196 247 : ValMetValAspGlyThrAspGly : 254 :!:|||||||||..! ! ||| ---LeuValAspGlyValLysGly 285197 : ---CTCGTCGACGGAGTGAAAGGG : 285219 vulgar: CbirOr3 18 254 . KQ414889.1 284502 285219 + 218 M 62 186 G 0 3 M 46 138 G 0 9 M 120 360 G 1 0 M 7 21 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284503 285219 218 + . gene_id 6 ; sequence CbirOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284503 285219 . + . KQ414889.1 exonerate:protein2genome:local exon 284503 285219 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284503 285219 218 + . alignment_id 6 ; Query CbirOr3 ; Align 284503 19 186 ; Align 284692 81 138 ; Align 284839 127 360 ; Align 285199 248 21 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 216 Query range: 15 -> 251 Target range: 289705 -> 290413 16 : GlnAsnPheAsnTyrLysSerAspThrGluTyrValMetArgIleAlaLysIleLeuL : 35 ..!||| !..!|||:!!!!!|||! !...|||..!.!...!:!!..! ! :!!| SerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleL 289706 : TCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCT : 289763 36 : euSerProValGlyValTrpPro<->LeuTyrArgAsnAspThrIleLeuAspLysIl : 53 ||!.!|||:!!|||:!!!::||| :!!!:!!!!..!! !:!! !! !!!:::!! euLysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgTh 289764 : TGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAAC : 289820 54 : eLysTyrPhePheHisThrSerPheValPheSerLeuMetGlyPheLeuLeuValPro : 72 !! ! !!.! ! ! ! ! !! !|||:!!:!: !|||:!!:!!|||||| rAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValPro 289821 : GGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCG : 289877 73 : HisValIleTyrThrPhePheAspAlaGluAspLeuThrArgTyrMetLysValIleA : 92 ! ! !:!!..!.!.|||..!! !.!.|||:!!!.!! !!:!:!:||| !:!!! PheSerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuG 289878 : TTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCG : 289937 93 : laAlaGlnValPheSerLeuLeuGlyIleIleLysPheTrpThrMetIleIleAsnAr : 111 .! !! !..!|||!!!||| ! !.!!.!!|||!:!!! !.!.! !!!:!!. ! lyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGl 289938 : GACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGG : 289994 112 : gAspGluIleSerCysCysLeuArgGlnIleGluIleGlnTyrArgAspValGluCys : 130 !...! !|||.!! !!|||:!!!:!!!.||||||! !.!.!::!:! :!!... ! ySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAsp 289995 : TTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGAC : 290051 131 : GluGluAspArgLeuValMetValArgAsnAlaLysLeuGlyArgGlnPheThrIleM : 150 |||!!: !!|||:!!:!!|||:!!||| !!!.!! !:!!.!!|||.!..!!! !! !: GluAspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysL 290052 : GAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAAC : 290111 151 : etTyrLeuGlyLeuLeuTyrGlyGlyAlaLeuProTyrHisIleIleMetProLeuVa : 169 !!! ! ! !!!!|||||| !|||!.!||| !!|||:!!! !:!!!!:|||||| ! euCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPh 290112 : TGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTT : 290168 170 : lAlaGluArgIleIleLysGluAspAsnThrThrGlnLeuProLeuProTyrLeuSer : 188 !:!!:!!!:!! !:!: .!.! !|||..!||| !|||||| !!|||! !.!! eSerLysLysSerVal---AsnGlyAsnValThrIleArgProLeuThrTyrProGly 290169 : CTCGAAGAAGAGCGTG---AACGGTAACGTGACTATCAGACCTCTAACTTATCCCGGT : 290222 189 : AspTyrIlePhePheValValGluAsnSerProValTyrGluIlePhePheValThrG : 208 !! ! ||||||! !|||:!!!!.||||||!.!||||||||| !!||| !! !! TyrGluGluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetH 290223 : TACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGC : 290282 209 : lnIleLeuPheSerThrLeuIleLeuSerThrAsnCysGlyValTyrSerLeuIleAl : 227 !. !:!!!:! !! !:!!! !!:!! !!.. !.!!.!|||||||||! .! isCysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrTh 290283 : ACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGAC : 290339 228 : aThrCysValMetHisAlaCysCysLeuPheGluValAlaArgArgHisIleGluThr : 246 !! !! !!.!! |||.!!||| !!! !.!!:!!:!! !! !! !!..:!:||| ! rIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAsp 290340 : GATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGAT : 290396 247 : ValMetValAspGly : 251 :!!! ! ||| LeuThrLysArgGly 290397 : CTGACAAAGAGAGGG : 290413 vulgar: CbirOr3 15 251 . KQ414889.1 289705 290413 + 216 M 27 81 G 0 3 M 132 396 G 1 0 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289706 290413 216 + . gene_id 7 ; sequence CbirOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289706 290413 . + . KQ414889.1 exonerate:protein2genome:local exon 289706 290413 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 289706 290413 216 + . alignment_id 7 ; Query CbirOr3 ; Align 289706 16 81 ; Align 289790 43 396 ; Align 290186 176 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 18 -> 233 Target range: 274362 -> 275010 19 : AsnTyrLysSerAspThrGluTyrValMetArgIleAlaLysIleLeuLeuSerProV : 38 |||!:! ! ||| !!:!!!:||| !:!!!:!:!: !::! !!!|||!.!|||: AsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 274363 : AATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTA : 274420 39 : alGlyValTrpProLeuTyrArgAsnAspThrIleLeuAspLysIleLysTyrPhePh : 57 !!|||!.!||||||||| ! ! ! !|||! !!!!!!:::!||| ! !.. leGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLeuSerHisLe 274421 : TAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCt : 274477 58 : eHisThrSerPheValPheSerLeuMetGlyPheLeuLeuValProHisValIleTyr : 76 . ... ::!!!!!!!!!: !! ! !:!!:!!||| !:!!.!!:!! uLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIlePheHis 274478 : tttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCAC : 274534 77 : ThrPhePheAspAlaGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValP : 96 ! !.!..!.! ! !|||..!||| !! ! ! :!!|||:!!:!!!.! !!! ! ! IleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyH 274535 : ATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTC : 274594 97 : heSerLeuLeuGlyIleIleLysPheTrpThrMetIleIleAsnArgAspGluIleSe : 115 !!!!!!!:!!||| !|||!!.!:! |||:!!:!::!!..!!!! ! |||||| ! isTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleAr 274595 : ACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACG : 274651 116 : rCysCysLeuArgGlnIleGluIleGlnTyrArgAspValGluCysGluGluAspArg : 134 ! !!|||:!!..!!!.!!::!!! !.!.!::||| !||| ! !||||||!:! gGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAspGln 274652 : CGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAA : 274708 135 : LeuValMetValArgAsnAlaLysLeuGlyArgGlnPheThrIleMetTyrLeuGlyL : 154 ! !||||||:!!!:!|||||||||:!!|||||| ! !!.!!|||.!.! ! !!.!! GlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaP 274709 : CAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGT : 274768 155 : euLeuTyrGlyGlyAlaLeuProTyrHisIleIleMetProLeuValAlaGluArgIl : 173 !!:!! ! !!|||!.!||| !||| !:!:|||! !!!!!..! !:!!! !:! heMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGlnThrVa 274769 : TCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGT : 274825 174 : e<->IleLysGluAspAsnThrThrGlnLeuProLeuProTyrLeuSerAspTyrIle : 191 ! :!! !.!.!!:!.!! !||| !! ! !||||||! ! !:!! !! ! ! lGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLysLys 274826 : TCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAG : 274882 192 : PhePheValValGluAsnSerProValTyrGluIlePhePheValThrGlnIleLeuP : 211 .!! !!!.!|||!!:!..||||||..! !!|||||| !!.!!!.!:!!|||.!!:!!! IleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnPheValS 274883 : ATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGT : 274942 212 : heSerThrLeuIleLeuSerThrAsnCysGlyValTyrSerLeuIleAlaThrCysVa : 230 .!! !:!!:!: !|||!:! !|||!.!!:!|||||| !|||..!! !!. erGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAl 274943 : CGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGC : 274999 231 : lMetHisAla : 233 ! |||||| aAlaHisAla 275000 : GGCACACGCT : 275010 vulgar: CbirOr3 18 233 . KQ414889.1 274362 275010 + 204 M 155 465 G 0 3 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274363 275010 204 + . gene_id 8 ; sequence CbirOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274363 275010 . + . KQ414889.1 exonerate:protein2genome:local exon 274363 275010 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274363 275010 204 + . alignment_id 8 ; Query CbirOr3 ; Align 274363 19 465 ; Align 274831 174 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 196 Query range: 15 -> 248 Target range: 232429 -> 233131 16 : GlnAsnPheAsnTyrLysSerAspThrGluTyrValMetArgIleAlaLysIleLeuL : 35 .!.!..!!.||| !! ! !!||| !|||||| !!!:!:!:!: !::: !!!| AspThrLeuAsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheL 232430 : GACACGTTGAACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTC : 232487 36 : euSerProValGlyValTrpProLeuTyrArgAsnAspThrIleLeuAspLysIleLy : 54 ||!!!|||:!!|||!.!||||||! ! !! !.!. !:!!! ! !.!.:!!:!! euThrProMetGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLeuLe 232488 : TGACACCGATGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACT : 232544 55 : sTyrPhePheHisThrSerPheValPheSerLeuMetGlyPheLeuLeuValProHis : 73 .!. ! ! ! ! ! !||||||||| !! !! !:!!|||||| ! uAlaLysLeuLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValProCys 232545 : CGCGAAACTGTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGC : 232601 74 : ValIleTyrThrPhePheAspAlaGluAspLeuThrArgTyrMetLysValIleAlaA : 93 :!!:!:!:!! !.!.|||!!:! ! !..!||| !..! |||||| !|||!.! IleLeuPheIleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleGlyP 232602 : ATTCTGTTCATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTC : 232661 94 : laGlnValPheSerLeuLeuGlyIleIleLysPheTrpThrMetIleIleAsnArgAs : 112 !!..! ! !! !|||:!!||| !:!:!!.!:!!! !:!!:!: !!!. !:! roMetSerHisPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAs 232662 : CTATGAGTCACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAA : 232718 113 : pGluIleSerCysCysLeuArgGlnIleGluIleGlnTyrArgAspValGluCysGlu : 131 !!!:||| !! !|||:!!..!|||:!::!! .!.!::|||:!!|||:!! nAspIleLeuTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLysPro 232719 : CGACATCCTCTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCC : 232775 132 : GluAspArgLeuValMetValArgAsnAlaLysLeuGlyArgGlnPheThrIleMetT : 151 ! !!||| !:!!|||:!!!:!||||||||||||||||||..!.!..!! !!!: ValHisArgAspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleA 232776 : GTCCATCGTGATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCG : 232835 152 : yrLeuGlyLeuLeuTyrGlyGlyAlaLeuProTyrHisIleIleMetProLeu<->Va : 169 ! ! !! !:!!:!! !|||!.! ! !! !!.!.|||:!!! !||| :! laAlaPheCysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuArgMe 232836 : CTGCGTTTTGCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTAT : 232892 170 : lAlaGluArgIleIleLysGluAspAsnThrThrGlnLeuProLeuProTyrLeuSer : 188 !::! ! ! !:!: !.!.!!:!:! !:!!..!! !|||||||||! ! !! ! tSerThrPheTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPhe 232893 : GAGCACGTTCTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTC : 232949 189 : AspTyrIlePhePheValValGluAsnSerProValTyrGluIlePhePheValThrG : 208 !! ! .!..!.! !..!..! !||||||..! !!||||||.!.|||||| !| TyrThrLysLeuMetAspThrArgPheSerProThrAsnGluIleMetPheValLeuG 232950 : TACACGAAGCTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTAC : 233009 209 : lnIleLeuPheSerThrLeuIleLeuSerThrAsnCysGlyValTyrSerLeuIleAl : 227 || !|||! !.!! !:!!:!: !|||..!!.! |||!.!! !.!!||| !|| lnCysLeuSerGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAl 233010 : AGTGTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGC : 233066 228 : aThrCysValMetHisAlaCysCysLeuPheGluValAlaArgArgHisIleGluThr : 246 |..! !.!|||||||||||| ! ! !.!..!.|||!.!! ! ! ! :!:!!: ! aValLeuAlaMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAsp 233067 : TGTTCTAGCGATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGAT : 233123 247 : ValMet : 248 :!!:!! LeuVal 233124 : TTGGTG : 233131 vulgar: CbirOr3 15 248 . KQ414889.1 232429 233131 + 196 M 153 459 G 0 3 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232430 233131 196 + . gene_id 9 ; sequence CbirOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232430 233131 . + . KQ414889.1 exonerate:protein2genome:local exon 232430 233131 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232430 233131 196 + . alignment_id 9 ; Query CbirOr3 ; Align 232430 16 459 ; Align 232892 169 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 124 -> 271 Target range: 304425 -> 304869 125 : TyrArgAspValGluCysGluGluAspArgLeuValMetValArgAsnAlaLysLeuG : 144 |||..!.!.||||||! ! ..!|||||| !:!!|||:!!!:! !!!.!:!!:!!| TyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetG 304426 : TATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGG : 304483 145 : lyArgGlnPheThrIleMetTyrLeuGlyLeuLeuTyrGlyGlyAlaLeuProTyrHi : 163 |||||.!..!.||||||!!:! ! ! !!!!:!!||| !|||!.! ! !||||| lyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHi 304484 : GTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCA : 304540 164 : sIleIleMetProLeuValAlaGluArgIleIleLysGluAspAsnThrThrGlnLeu : 182 |! :!!|||! !!!!!.!.!!! !! ! !:!: ! ||| !!||| !||| ! sThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgThrIleLys 304541 : CACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAA : 304597 183 : ProLeuProTyrLeuSerAspTyrIlePhePheValValGluAsnSerProValTyrG : 202 |||||| !|||! !!!! !! ! !!!.|||! !|||:!!!..||||||:!!|||| ProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIleTyrG 304598 : CCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACG : 304657 203 : luIlePhePheValThrGlnIleLeuPheSerThrLeuIleLeuSerThrAsnCysGl : 221 ||:!: !!!:! !!..!!!. !:!!! !.!! !:!!|||! !|||! !!.!..!|| luLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThrAlaGl 304658 : AATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGG : 304714 222 : yValTyrSerLeuIleAlaThrCysValMetHisAlaCysCysLeuPheGluValAla : 240 |!.!! !.!!||| !||| !! !!.!! ||||||||| ! ! !.!!!!::!!!.! yAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleVal 304715 : TGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTT : 304771 241 : ArgArgHisIle<->GluThrValMetValAspGlyThrAspGlyLeuHisGluArgP : 259 ! ! !!..:!: !!: !|||! ! ! ! !:!!..!! !||| !!:!!|||! MetSerArgLeuGlyAspLeuValAsnSerLysGluSerSerAspLeuAspLysArgL 304772 : ATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCATCTGATTTAGATAAACGAT : 304831 260 : heGlyHisIleIleAlaGlnHisThrGlnAlaLeuArg : 271 !. !.!.|||:!!! !!!.||| !!:! !|||||| euIleGluIleValGluHisHisLeuArgIleLeuArg 304832 : TAATAGAAATTGTTGAGCATCATTTGCGAATTTTAAGG : 304869 vulgar: CbirOr3 124 271 . KQ414889.1 304425 304869 + 164 M 120 360 G 0 3 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304426 304869 164 + . gene_id 10 ; sequence CbirOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304426 304869 . + . KQ414889.1 exonerate:protein2genome:local exon 304426 304869 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304426 304869 164 + . alignment_id 10 ; Query CbirOr3 ; Align 304426 125 360 ; Align 304789 245 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 343 -> 403 Target range: 280282 -> 280462 344 : LysIleGlyGluAlaSerTyrPheIleAsnTrpTyrAlaLeuProAlaLysAsnMetS : 363 |||:!!|||! !:!!!!!|||.!.|||:!!|||||| !||||||!.!|||!!. . LysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaG 280283 : AAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCAC : 280340 364 : erAsnLeuIleMetMetMetValArgSerAsnArgSerSerThrLeuThrAlaGlyLy : 382 .!..!||||||:!!!!:.!.!.! !|||||| !|||! !! !|||||||||||||| lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 280341 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 280397 383 : sIlePheAspIleSerLeuGlnGlyPheSerAspValCysLysThrSerAlaAlaTyr : 401 ||||.!!|||:!!||||||....!!|||!!!..!||| !!! ! !!:! !:!!||| sIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 280398 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 280454 402 : PheAsn : 403 !:!:!! TyrHis 280455 : TATCAT : 280462 vulgar: CbirOr3 343 403 . KQ414889.1 280282 280462 + 136 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280283 280462 136 + . gene_id 11 ; sequence CbirOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280283 280462 . + . KQ414889.1 exonerate:protein2genome:local exon 280283 280462 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280283 280462 136 + . alignment_id 11 ; Query CbirOr3 ; Align 280283 344 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 343 -> 403 Target range: 287069 -> 287249 344 : LysIleGlyGluAlaSerTyrPheIleAsnTrpTyrAlaLeuProAlaLysAsnMetS : 363 |||:!!||| !:!!!!!|||.!.|||:!!|||||| !||||||!.!|||!.. . LysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaG 287070 : AAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTC : 287127 364 : erAsnLeuIleMetMetMetValArgSerAsnArgSerSerThrLeuThrAlaGlyLy : 382 .!..!||||||:!!!!:.!.!.! !|||||| !|||! !! !|||||||||||||| lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 287128 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 287184 383 : sIlePheAspIleSerLeuGlnGlyPheSerAspValCysLysThrSerAlaAlaTyr : 401 ||||.!!|||:!!||||||....!!|||!!!..!||| !!! ! !!:! !:!!||| sIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 287185 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 287241 402 : PheAsn : 403 !:!:!! TyrHis 287242 : TATCAT : 287249 vulgar: CbirOr3 343 403 . KQ414889.1 287069 287249 + 135 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287070 287249 135 + . gene_id 12 ; sequence CbirOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287070 287249 . + . KQ414889.1 exonerate:protein2genome:local exon 287070 287249 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287070 287249 135 + . alignment_id 12 ; Query CbirOr3 ; Align 287070 344 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 311 -> 394 Target range: 301787 -> 302036 312 : PheGlyThrIleIleTyrLeuIleLeuAlaIleSerIleLeuValAsnValPheIleL : 331 ||| !!||| !! !|||||| ! ! ... ...||| ||||||||| !! PheArgThrGlyThrTyrLeuGln***LysPheProPheLeuPheAsnValPheProA 301788 : TTCCGAACAGGTACTTACTTACAGTAGAagtttccatttcttttcaatGTATTTCCAC : 301845 332 : euSerSerIleGlyAspArgLeuLysGluGluSerGluLysIleGlyGluAlaSerTy : 350 !! !! !! !.!! !! ! !:::!!: !!!!!...:!!||||||..!|||||||| rgTyrLeuSerSerPheIleGlyArgAsp***CysSerGlnIleGlySerAlaSerTy 301846 : GGTATTTAAGCAGCTTTATTGGTCGTGATTAGTGTAGCCAAATTGGTTCAGCATCGTA : 301902 351 : rPheIleAsnTrpTyrAlaLeuProAlaLysAsnMetSerAsnLeuIleMetMetMet : 369 | |||:!!|||||| !||||||||||||!.. ! !:!!||||||:!::!:! rGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSer 301903 : CGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGC : 301959 370 : ValArgSerAsnArgSerSerThrLeuThrAlaGlyLysIlePheAspIleSerLeuG : 389 |||! !|||.!. ! !! !!! !||||||||||||||||||.!!|||:!!||||||. ValIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuA 301960 : GTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGA : 302019 390 : lnGlyPheSerAspVal : 394 !. !||||||..!||| snThrPheSerSerVal 302020 : ATACATTCAGCTCTGTA : 302036 vulgar: CbirOr3 311 394 . KQ414889.1 301787 302036 + 132 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301788 302036 132 + . gene_id 13 ; sequence CbirOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301788 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301788 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301788 302036 132 + . alignment_id 13 ; Query CbirOr3 ; Align 301788 312 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 343 -> 398 Target range: 254280 -> 254445 344 : LysIleGlyGluAlaSerTyrPheIleAsnTrpTyrAlaLeuProAlaLysAsnMetS : 363 |||:!!||||||!.! !|||.!.! !:!!|||||| !|||||| !!:!!..!!: LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 254281 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 254338 364 : erAsnLeuIleMetMetMetValArgSerAsnArgSerSerThrLeuThrAlaGlyLy : 382 !:!!||||||:!!!!:!!:..!||||||||| ! ! ! !:!!||||||||||| euAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLy 254339 : TCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaa : 254395 383 : sIlePheAspIleSerLeuGlnGlyPheSerAspValCysLysThrSer : 398 ||||||| :::|||||| ! !|||.!!|||||| !!:!!|||!:! sIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 254396 : aatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 254445 vulgar: CbirOr3 343 398 . KQ414889.1 254280 254445 + 130 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254281 254445 130 + . gene_id 14 ; sequence CbirOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254281 254445 . + . KQ414889.1 exonerate:protein2genome:local exon 254281 254445 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254281 254445 130 + . alignment_id 14 ; Query CbirOr3 ; Align 254281 344 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 343 -> 400 Target range: 238634 -> 238805 344 : LysIleGlyGluAlaSerTyrPheIleAsnTrpTyrAlaLeuProAlaLysAsnMetS : 363 |||:!!||||||!.! !|||.!.! !:!!|||||| !|||||| !!:!!..!!: LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 238635 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 238692 364 : erAsnLeuIleMetMetMetValArgSerAsnArgSerSerThrLeuThrAlaGlyLy : 382 !:!!||||||:!!!!:!!: !||||||||| ! ! !! !:!!||||||||||| euAspLeuIleLeuIleIleLysArgSerAsnValValValLysValThrAlaGlyLy 238693 : TCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCACCGCTGGAAA : 238749 383 : sIlePheAspIleSerLeuGlnGlyPheSerAspValCysLysThrSerAlaAla : 400 |:!!!!. !!!!:|||||| ! !|||.!!|||||| !!:!!|||!:! !||| sValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeuAla 238750 : AGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTTGCT : 238805 vulgar: CbirOr3 343 400 . KQ414889.1 238634 238805 + 123 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238635 238805 123 + . gene_id 15 ; sequence CbirOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238635 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238635 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238635 238805 123 + . alignment_id 15 ; Query CbirOr3 ; Align 238635 344 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 340 -> 394 Target range: 264723 -> 264885 341 : GluSerGluLysIleGlyGluAlaSerTyrPheIleAsnTrpTyrAlaLeuProAlaL : 360 :!!!!!:!!|||:!!||||||!.! !|||.!. ||||||||| !|||||| !| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 361 : ysAsnMetSerAsnLeuIleMetMetMetValArgSerAsnArgSerSerThrLeuTh : 379 ||:!!!!: !:!!||||||:!:!!:!!::!!||||||!:! ! !! !! !!!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 380 : rAlaGlyLysIlePheAspIleSerLeuGlnGlyPheSerAspVal : 394 |||||||||||||.!! !!!!:|||:!! ! !|||||||||||| rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: CbirOr3 340 394 . KQ414889.1 264723 264885 + 123 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264885 123 + . gene_id 16 ; sequence CbirOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264885 123 + . alignment_id 16 ; Query CbirOr3 ; Align 264724 341 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 343 -> 397 Target range: 244664 -> 244826 344 : LysIleGlyGluAlaSerTyrPheIleAsnTrpTyrAlaLeuProAlaLysAsnMetS : 363 |||:!!||||||!.! !|||.!.! !:!!|||||| !|||||| !!:!!..!!: LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 244665 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 244722 364 : erAsnLeuIleMetMetMetValArgSerAsnArgSerSerThrLeuThrAlaGlyLy : 382 !:!!||||||:!!!!:!!: !|||||||||! ! ! ! !:!!||||||||||| euAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleThrAlaGlyLy 244723 : TCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCACCGCTGGAAA : 244779 383 : sIlePheAspIleSerLeuGlnGlyPheSerAspValCysLysThr : 397 |:!!!!. !!!!:|||||| ! !|||.!!|||||| !!:!!||| sValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThr 244780 : AGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 244826 vulgar: CbirOr3 343 397 . KQ414889.1 244664 244826 + 122 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244665 244826 122 + . gene_id 17 ; sequence CbirOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244665 244826 . + . KQ414889.1 exonerate:protein2genome:local exon 244665 244826 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244665 244826 122 + . alignment_id 17 ; Query CbirOr3 ; Align 244665 344 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 340 -> 405 Target range: 206239 -> 206434 341 : GluSerGluLysIleGlyGluAlaSerTyrPheIleAsnTrpTyrAlaLeuProAlaL : 360 :!!!:!.!. :!:||| !.!!|||! ! :!:||||||||| !|||||| !! GlnAsnHisValValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnA 206240 : CAGAACCACGTCGTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACA : 206297 361 : ysAsnMetSerAsnLeuIleMetMetMetValArgSerAsnArgSerSerThrLeuTh : 379 :!:!! ! !!::!:!!|||:!!!!:!!:!.!! !|||||| ! !!! !! !||||| rgHisAlaArgSerMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuTh 206298 : GACATGCGCGCTCTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAAC : 206354 380 : rAlaGlyLysIlePheAspIleSerLeuGlnGlyPheSerAspValCysLysThrSer : 398 ||||||||||!!:|||!!:!!:|||||| .!!|||!!!|||||| !!! !! !..! rAlaGlyLysMetPheGluMetSerLeuAlaSerPheThrAspValSerMetLysGln 206355 : AGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTCACCGATGTAAGTATGAAACAG : 206411 399 : AlaAlaTyrPheAsnPheIle : 405 ! ! ||| |||||| AsnArgMetPhePhePheIle 206412 : AATCGAATgttttttttcatt : 206434 vulgar: CbirOr3 340 405 . KQ414889.1 206239 206434 + 121 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206240 206434 121 + . gene_id 18 ; sequence CbirOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206240 206434 . + . KQ414889.1 exonerate:protein2genome:local exon 206240 206434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206240 206434 121 + . alignment_id 18 ; Query CbirOr3 ; Align 206240 341 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 339 -> 394 Target range: 277548 -> 277713 340 : GluGluSerGluLysIleGlyGluAlaSerTyrPheIleAsnTrpTyrAlaLeuProA : 359 ..!:!!!!!:!!|||:!!||||||!.! !|||.!.! ||||||||| !||||||! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 360 : laLysAsnMetSerAsnLeuIleMetMetMetValArgSerAsnArgSerSerThrLe : 378 !|||:!!!!: !||||||:!!:!:!!:!!: !||||||!:! :: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 379 : uThrAlaGlyLysIlePheAspIleSerLeuGlnGlyPheSerAspVal : 394 :||||||||||||:::......:::|||:!! ! !|||.!!|||||| eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspVal 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTA : 277713 vulgar: CbirOr3 339 394 . KQ414889.1 277548 277713 + 121 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277713 121 + . gene_id 19 ; sequence CbirOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277549 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277713 121 + . alignment_id 19 ; Query CbirOr3 ; Align 277549 340 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 340 -> 394 Target range: 258462 -> 258624 341 : GluSerGluLysIleGlyGluAlaSerTyrPheIleAsnTrpTyrAlaLeuProAlaL : 360 :!!!!!:!!|||:!!|||!!:!.! !|||.!.! !:!!|||||| !||||||! !| GlnCysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspL 258463 : CAGTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACA : 258520 361 : ysAsnMetSerAsnLeuIleMetMetMetValArgSerAsnArgSerSerThrLeuTh : 379 ||!..!!: !:!!||||||:!!:!:!!:!.!||||||!:! ! ! ! !:!!|| ysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleTh 258521 : AAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCAC : 258577 380 : rAlaGlyLysIlePheAspIleSerLeuGlnGlyPheSerAspVal : 394 ||||||||||...||| :::|||:!! ! !|||||||||||| rAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAspVal 258578 : CGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATGTG : 258624 vulgar: CbirOr3 340 394 . KQ414889.1 258462 258624 + 118 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258463 258624 118 + . gene_id 20 ; sequence CbirOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 258463 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258463 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258463 258624 118 + . alignment_id 20 ; Query CbirOr3 ; Align 258463 341 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 340 -> 398 Target range: 297641 -> 297815 341 : GluSerGluLysIleGlyGluAlaSerTyrPheIleAsnTrpTyrAlaLeuProAlaL : 360 :!!:!!||||||.!!|||.!.|||:!!||| !|||.!.|||||| !|||||| !!! GlnAlaGluLysPheGlyAsnAlaAlaTyrAsnIleGluTrpTyrAsnLeuProProA 297642 : CAGGCTGAAAAATTCGGCAATGCAGCTTATAACATCGAATGGTACAACTTACCGCCAA : 297699 361 : ysAsnMetSerAsnLeuIleMetMetMetValArgSerAsnArgSerSerThrLeuTh : 379 !.!.. !:!!|||:!::!:|||!!:! !! !:!!!!. ! !! !!! !||||| snArgAlaLeuAspLeuValLeuMetIleGlyIleAlaLysPheProProArgLeuTh 297700 : ACAGGGCTCTCGATCTGGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCAC : 297756 380 : rAlaGlyLysIlePheAspIleSerLeuGlnGlyPheSerAspValCysLysThrSer : 398 |...|||||||||||||||||||||:!!.!. !||||||! !||| !!!:: ||| rGlyGlyLysIlePheAspIleSerIleAsnThrPheSerAlaValArgArgGlnSer 297757 : AggtggaaaaatattcgatatatCGATAAACACGTTCAGTGCCGTACGTAgacaaagt : 297813 vulgar: CbirOr3 340 398 . KQ414889.1 297641 297815 + 118 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297642 297815 118 + . gene_id 21 ; sequence CbirOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297642 297815 . + . KQ414889.1 exonerate:protein2genome:local exon 297642 297815 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297642 297815 118 + . alignment_id 21 ; Query CbirOr3 ; Align 297642 341 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14718 [mRNA] [translate_table: standard] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 284 -> 327 Target range: 235012 -> 235141 285 : TyrPheThrAsnTrpTyrGluLeuProAsnGluTyrAlaLysAlaLeuMetPheCysI : 304 |||.!.|||.!.||||||..!||||||:!!:!! !||| !.!|||:!:.!. !| TyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIleI 235013 : TACATGACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCA : 235070 305 : leAlaArgSerGlnLysProSerHisLeuThrAlaGlyLysPheTyrValPheSerLe : 323 ||:!!||||||...! ! !! ! ! :!!||||||||||||||| !.!.|||:! leSerArgSerSerMetValIleLysIleThrAlaGlyLysPheLeuGlnMetSerVa 235071 : TCTCCAGGTCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGT : 235127 324 : uGluThrPheGly : 327 !! !||||||||| lAlaThrPheGly 235128 : CGCAACATTTGGC : 235141 vulgar: Lalb_14718 284 327 . KQ414889.1 235012 235141 + 101 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 235013 235141 101 + . gene_id 1 ; sequence Lalb_14718 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 235013 235141 . + . KQ414889.1 exonerate:protein2genome:local exon 235013 235141 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 235013 235141 101 + . alignment_id 1 ; Query Lalb_14718 ; Align 235013 285 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1362 Query range: 9 -> 404 Target range: 194138 -> 198627 10 : PheArgAsnLeuAspTyrLysSerAspThrAspTyrValIleLysValAlaLysThrL : 29 !:!||||||:!!:!!||||||! !||||||!!:|||!.!:!!::!|||||||||.!!| TyrArgAsnValAsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaL 194139 : TACCGCAACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGC : 194196 30 : euLeuThrProValGlyIleTrpProLeuTyrArgGlyAsnSerThrSerAspLysIl : 48 |||||||||||:!!|||||||||||| |||! !:!!||| ! !!|||!:!:! euLeuThrProIleGlyIleTrpPro------ArgGluAspSerLeuArgAspArgVa 194197 : TTCTAACACCGATCGGTATCTGGCCA------AGGGAGGATTCTCTTCGCGACAGAGT : 194247 49 : eLysAsnPheLeuGlnThrGlyValIlePheCysLeuMetCysPheLeuLeuValPro : 67 !::! ||| !||||||||||||:!!|||..!|||||||||||||||||||||||| lArgLeuPheAlaGlnThrGlyValValPheAlaLeuMetCysPheLeuLeuValPro 194248 : CCGACTGTTCGCTCAAACTGGCGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCT : 194304 68 : HisValIleTyrThrPhePheAspAlaGluAspLeuSerArgTyrMetLysValIleG : 87 |||||||||||||||!:!||||||..!|||||||||!!!||||||||||||||||||! HisValIleTyrThrTyrPheAspCysGluAspLeuThrArgTyrMetLysValIleA 194305 : CACGTGATCTACACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCG : 194364 88 : lyAlaGlnValPheSerLeuLeuAlaIleIleLysPheTrpThrMetIleIleAsnAr : 106 .!||||||||||||||||||||||||||||||||||||||||||||||||:!:||||| laAlaGlnValPheSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnAr 194365 : CGGCGCAAGTGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAG : 194421 107 : gGluGlyIleArgTyrCysLeuGlnGlnMetGluIleGlnTyrArgAspValGluCys : 125 |:!!! !||||||!:!||||||! !:!!||||||! ||||||||||||||||||||| gLysGluIleArgPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCys 194422 : GAAAGAGATCAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGC : 194478 126 : GluGluAspArgLeuValMetThrAsnSerAlaLysIleGlyArgLeuPheThrValA : 145 ||||||||||||! !||||||||||||!!!|||||||||||||||!!!||||||..! GluGluAspArgGlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrL 194479 : GAGGAGGATCGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCC : 194538 146 : laTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleMetProLeuLe : 164 !|||||||||||||||||||||||||||||||||||||||||||||:!:||||||:! euTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMe 194539 : TGTACTTGGGACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGAT : 194595 165 : uAlaAspArgValValLysSerAspAsnThrThrGlnIleProLeuProTyrLeuSer : 183 !:!!!!:|||:!!||||||..!||||||!:!||||||||||||||||||||||||||| tSerGluArgIleValLysGluAspAsnSerThrGlnIleProLeuProTyrLeuSer 194596 : GTCGGAGAGGATTGTCAAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGC : 194652 184 : AsnTyrIlePhePheValValGluAspSerProLeuTyrGluIleValPheValSerG : 203 ||||||:!!||||||!.!:!!||||||||||||:!!|||||||||..!|||||||||| AsnTyrValPhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerG 194653 : AACTATGTTTTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGC : 194712 204 : lnIlePheIleSerSerIleIleLeuSerThrAsnCysGlyValTyrSerLeuIleAl : 222 |||||.!.|||||||||||||||||||||||||||||||||:!!|||||||||:!!|| lnIleLeuIleSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAl 194713 : AGATACTGATTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGC : 194769 223 : aThrCysValMetHisGlyCysCysLeuPheGluValValArgArgLysMetGluThr : 241 |||| !:!!|||||| !!||| !!||||||||||||..!!!!|||!:!||||||||| aThrIleIleMetHisCysCysGlyLeuPheGluValThrSerArgArgMetGluThr 194770 : TACTATTATTATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGATGGAGACT : 194826 242 : IleLeuSerAsnGlyThrAspAspLeuHisArgArgLeuGlyGlnValIleGluHisH : 261 |||! ! ! ! ! ! ! |||:!!!.. !!|||||| !!.!.|||:!!:!! !| IleSerValProThrGlyLysAspIleArgGlyArgLeuArgAspValValGlnPheH 194827 : ATTTCTGTGCCCACTGGGAAGGATATTCGGGGTAGACTTAGGGACGTCGTTCAGTTTC : 194886 262 : isIleGlnAlaIle{Ar} >>>> Target Intron 1 >>>> {g}PheAlaGl : 269 ||:!::!!||||||{!:} 1391 bp {!}|||||||| isLeuLysAlaIle{Ly}++ ++{s}PheAlaGl 194887 : ATCTGAAAGCAATT{AA}gt.........................ag{a}tTCGCTGA : 196301 270 : uMetIleGluLysSerLeuAsnIleValPheLeuCysGluMetValGlyCysThrVal : 288 |||||||||||||:!!||||||||||||||||||! ||||||:!!|||||||||:!! uMetIleGluLysAlaLeuAsnIleValPheLeuSerGluMetLeuGlyCysThrIle 196302 : AATGATCGAGAAAGCACTGAACATCGTGTTTCTATCAGAGATGCTTGGCTGCACTATC : 196358 289 : IleIleCysPheLeuGluPheGlyValLeuLys >>>> Target Intron 2 >> : 300 ||||||||||||||||||!:!||||||:!! ! 65 bp IleIleCysPheLeuGluTyrGlyValIleVal++ 196359 : ATCATATGTTTCCTGGAATACGGTGTAATCGTGgt....................... : 196396 301 : >> GluTrpGluAspGlyLysValLeuProMetGlyThrTyrPheValLeuMetThr : 317 !!:|||! ||| !|||..!||| !||| !||||||||||||||||||||| ++AspTrpAlaAspHisLysThrLeuSerMetMetThrTyrPheValLeuMetThr 196397 : ..agGATTGGGCCGATCACAAGACACTCAGCATGATGACGTACTTCGTTCTGATGACA : 196510 318 : SerMetTyrIleAsnValTyrIleIleSerAlaIleGlyAspArgLeuLysGluGlu : 337 |||!!:!:!:!:||||||!:!||||||||| !||||||||||||||||||:!!! SerIlePheValAsnValPheIleIleSerPheIleGlyAspArgLeuLysGlnVal+ 196511 : TCGATATTCGTGAACGTGTTCATAATCTCGTTCATCGGTGATCGTCTTAAACAAGTgg : 196570 338 : >>>> Target Intron 3 >>>> SerGluLysValGlyGluSerSerTyrPhe : 346 82 bp ||||||!:!|||||||||!!!||||||||| + ++SerGluArgValGlyGluThrSerTyrPhe 196571 : t.........................agAGCGAAAGAGTAGGCGAAACGTCGTACTTC : 196679 347 : IleGluTrpTyrAsnLeuProThrAsnIleValGlyTyrLeuIleLeuMetIleIleA : 366 !!: !||||||:!!|||||| !:!!:!!!.! ! !!:!!! ! !!!:|||:!!| MetProTrpTyrAspLeuProAspAspLeuAlaLysAsnIleArgThrIleIleLeuA 196680 : ATGCCGTGGTACGATCTTCCGGACGATTTAGCCAAGAATATAAGAACGATCATACTAA : 196739 367 : rgSerGlyArgProSerThrLeuThrAlaAlaLysIlePheAspLeuSerLeuGlnGl : 385 ||:!!.!!!.!||||||!:!|||:!!!.!||||||:!:||||||||||||||||||!. rgAlaSerHisProSerSerLeuSerGlyAlaLysLeuPheAspLeuSerLeuGlnAl 196740 : GAGCCAGTCATCCGTCAAGTTTGTCTGGCGCCAAGTTGTTCGATCTTTCGCTTCAAGC : 196796 386 : yPheCysGlu >>>> Target Intron 4 >>>> ValCysLysThrSerAlaA : 395 !||||||!!: 1772 bp ||||||||||||||||||| aPheCysAsp++ ++ValCysLysThrSerAlaA 196797 : ATTTTGCGACgt.........................agGTTTGCAAAACTTCTGCGG : 198598 396 : laTyrPheAsnPheIleArgAlaMetThr : 404 ||||||||||||||::::::||||||||| laTyrPheAsnPheLeuGlnAlaMetThr 198599 : CctacttcaattttctacaagCAATGACA : 198627 vulgar: CbirOr2 9 404 . KQ414889.1 194138 198627 + 1362 M 28 84 G 2 0 M 226 678 S 0 2 5 0 2 I 0 1387 3 0 2 S 1 1 M 33 99 5 0 2 I 0 61 3 0 2 M 37 111 5 0 2 I 0 78 3 0 2 M 52 156 5 0 2 I 0 1768 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194139 198627 1362 + . gene_id 1 ; sequence CbirOr2 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 194139 194902 . + . KQ414889.1 exonerate:protein2genome:local exon 194139 194902 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 194903 194904 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 194903 196293 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 196292 196293 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 196294 196393 . + . KQ414889.1 exonerate:protein2genome:local exon 196294 196393 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 196394 196395 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 196394 196458 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 196457 196458 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 196459 196569 . + . KQ414889.1 exonerate:protein2genome:local exon 196459 196569 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 196570 196571 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 196570 196651 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 196650 196651 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 196652 196807 . + . KQ414889.1 exonerate:protein2genome:local exon 196652 196807 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 196808 196809 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 196808 198579 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 198578 198579 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 198580 198627 . + . KQ414889.1 exonerate:protein2genome:local exon 198580 198627 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194139 198627 1362 + . alignment_id 1 ; Query CbirOr2 ; Align 194139 10 84 ; Align 194223 40 678 ; Align 196295 267 99 ; Align 196459 300 111 ; Align 196652 337 156 ; Align 198580 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 284 Query range: 13 -> 271 Target range: 221357 -> 222143 14 : AspTyrLysSerAspThrAspTyrValIleLysValAlaLysThrLeuLeuThrProV : 33 |||||||||!!!:!!..! ! ! !:!::!!:!!::!::: !:!!|||! !|||: AspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProI 221358 : GATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGA : 221415 34 : alGlyIleTrpProLeuTyrArgGlyAsnSerThrSerAspLysIleLysAsnPheLe : 52 !!|||:!!|||||| !! !..!! !|||||| !!!:!:! ! !!!::|| leGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLe 221416 : TCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 53 : uGlnThrGlyValIlePheCysLeuMetCysPheLeuLeuValProHisValIleTyr : 71 | !!.!! !||| !!:! !!|||!!: ||||||||||||||| ! !:!!||| uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 72 : ThrPhePheAspAlaGluAspLeuSerArgTyrMetLysValIleGlyAlaGlnValP : 91 ..!.!!.!!!!:!.!||||||:!!! !!.! !!:|||:!!:!:||| !! ! !| ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 92 : heSerLeuLeuAlaIleIleLysPheTrpThrMetIleIleAsnArgGluGlyIleAr : 110 ||!!!:!!:!!|||.!!:!!|||!:! !:!!|||:!! !!..!.!.! !||||| heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 111 : gTyrCysLeuGlnGlnMetGluIleGlnTyrArgAspValGluCysGluGluAspArg : 129 | ! |||:!!:!!!::!!:||| .!.!::!:!:!!:!! ! !...:!!|||!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 130 : LeuValMetThrAsnSerAlaLysIleGlyArgLeuPheThrValAlaTyrLeuGlyL : 149 !:!!|||! !.!.!:!|||! .!!||||||! !!!.! !:!! !! ! ! !! AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 150 : euSerTyrGlyGlyAlaLeuProTyrHisIleIleMetProLeuLeuAlaAspArgVa : 168 !!! !|||.!!||| ::: |||:::||| !!!:|||!!! !!.!! !!:!:! heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 169 : lValLysSerAsp<->AsnThrThrGlnIleProLeuProTyrLeuSerAsnTyrIle : 186 ! ! !..!||| |||...||| ||||||:!! !!:!! !! !::: .!! eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 187 : PhePheValValGluAspSerProLeuTyrGluIleValPheValSerGlnIlePheI : 206 .!! !!! !..!..! !!||||||:!! !!||||||:!!||| ! !||||||.!. IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 207 : leSerSerIleIleLeuSerThrAsnCysGlyValTyrSerLeuIleAlaThrCysVa : 225 .!!:!!:!:!!:! !|||! !!..! !.!!.!! !||||||:!!|||! !! !!. laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 226 : lMetHisGlyCysCysLeuPheGluValValArgArgLysMetGluThrIleLeuSer : 244 !:!!|||!.!||| !!! !.!.:!!|||:!!! !!!! !:!!:!! !:!::!!!:! aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 245 : AsnGlyThrAsp<-><-><->AspLeuHisArgArgLeuGlyGlnValIleGluHisH : 261 ..! !!.!!||| :!!:!! !!||||||:!!!.!:!!:!!:!:.!.!!.| GlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnH 222052 : GGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAAC : 222111 262 : isIleGlnAlaIleArgPheAlaGluMetIle : 271 ||:!!!:! !:!:!:!!:!!.!... ||| isValArgIleLeuGlnTyrValArgCysIle 222112 : ACGTTCGAATATTGCAGTATGTACGTTGTATC : 222143 vulgar: CbirOr2 13 271 . KQ414889.1 221357 222143 + 284 M 159 477 G 0 3 M 76 228 G 0 9 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221358 222143 284 + . gene_id 2 ; sequence CbirOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221358 222143 . + . KQ414889.1 exonerate:protein2genome:local exon 221358 222143 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221358 222143 284 + . alignment_id 2 ; Query CbirOr2 ; Align 221358 14 477 ; Align 221838 173 228 ; Align 222075 249 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 279 Query range: 11 -> 349 Target range: 232432 -> 234773 12 : AsnLeuAspTyrLysSerAspThrAspTyrValIleLysValAlaLysThrLeuLeuT : 31 !..|||:!! !! ! !!||| !!!:||| !|||:!!||| !::: !!!!|||| ThrLeuAsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuT 232433 : ACGTTGAACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGA : 232490 32 : hrProValGlyIleTrpProLeuTyrArgGlyAsnSerThrSerAspLysIleLysAs : 50 |||||:!!||| !||||||! ! !! !! !!.!|||! !:!!.!.:!!:!! hrProMetGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAl 232491 : CACCGATGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGC : 232547 51 : nPheLeuGlnThrGlyValIlePheCysLeuMetCysPheLeuLeuValProHisVal : 69 ||| !! ! !..! ! !! !|||||| !! !! !:!!|||||| !:!! aLysLeuLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValProCysIle 232548 : GAAACTGTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATT : 232604 70 : IleTyrThrPhePheAspAlaGluAspLeuSerArgTyrMetLysValIleGlyAlaG : 89 :!:!:!! !.!.|||!!:! ! !..!|||..!..! |||||| !|||||| !!. LeuPheIleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProM 232605 : CTGTTCATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTA : 232664 90 : lnValPheSerLeuLeuAlaIleIleLysPheTrpThrMetIleIleAsnArgGluGl : 108 .! ! !! !|||:!!!.! !:!:!!.!:!!! !:!!:!: !!!. !.!.! etSerHisPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAs 232665 : TGAGTCACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGA : 232721 109 : yIleArgTyrCysLeuGlnGlnMetGluIleGlnTyrArgAspValGluCysGluGlu : 127 !|||! !||||||:!!:!!|||:!!:!! .!.!::|||:!!|||:!! ! pIleLeuTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLysProVal 232722 : CATCCTCTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTC : 232778 128 : AspArgLeuValMetThrAsnSerAlaLysIleGlyArgLeuPheThrValAlaTyrL : 147 !!||| !:!!||| !!!.!:!||||||:!!||||||! !.!..!! ! ! ! HisArgAspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaA 232779 : CATCGTGATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTG : 232838 148 : euGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleMetProLeu<->LeuAl : 165 ! !! !! !:!! !|||!.! ! !! !!.!.|||:!!! !||| :!!:: laPheCysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSe 232839 : CGTTTTGCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAG : 232895 166 : aAspArgValValLysSerAspAsnThrThrGlnIleProLeuProTyrLeuSerAsn : 184 ! ! !||| !!:!!!:!:! !:!!..! !|||||||||! ! !! ! !! rThrPheTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyr 232896 : CACGTTCTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTAC : 232952 185 : TyrIlePhePheValValGluAspSerProLeuTyrGluIleValPheValSerGlnI : 204 ! .!..!.! !..!..! !|||||| ! !!||||||:!!|||||| !||| ThrLysLeuMetAspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnC 232953 : ACGAAGCTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGT : 233012 205 : lePheIleSerSerIleIleLeuSerThrAsnCysGlyValTyrSerLeuIleAlaTh : 223 !.!! !.!!! !|||:!: !|||..!!.! |||!.!! !.!!||| !|||.. ysLeuSerGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaVa 233013 : GTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGT : 233069 224 : rCysValMetHisGlyCysCysLeuPheGluValValArgArgLysMetGluThrIle : 242 ! !.!||||||!.!||| ! ! !.!..!.||||||! ! !|||:!!!!: !:!: lLeuAlaMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeu 233070 : TCTAGCGATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTG : 233126 243 : Leu<->SerAsnGlyThrAspAsp<-><->LeuHisArgArgLeuGlyGlnValIleG : 259 :!! :!!!!.||| !!!:!!: !!!.|||!:!|||||| :!!:!:| ValAspAlaLysGlyGlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValG 233127 : GTGGACGCGAAAGGGCAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGG : 233186 260 : luHisHisIleGlnAlaIle{Ar} >>>> Target Intron 1 >>>> {g}Ph : 267 ||||||||:!:!::.!!:!!{!!} 1315 bp {!}|| luHisHisLeuArgThrLeu{Se}++ ++{r}Ph 233187 : AGCATCATTTGCGTACATTA{AG}gt.........................ag{T}TT : 234525 268 : eAlaGluMetIleGluLysSerLeuAsnIleValPheLeuCysGluMetValGlyCys : 286 | !..!! ||||||!!. !:!!|||:!!:!!! !||| !|||:!!||||||||| eIleArgAsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuValGlyCys 234526 : TATACGGAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGATGC : 234582 287 : ThrValIleIleCysPheLeuGluPheGlyValLeuLysGluTrpGluAspGlyLysV : 306 |||:!!! !!!:|||.!.||||||!:! !:!!|||! !! ! ! ...|||: ThrLeuAsnMetCysMetLeuGluTyrTyrLeuLeuThrValArgPheThrAsnLysI 234583 : ACGTTGAACATGTGCATGCTCGAGTATTATTTACTCACGGTACGTTTTactaataaaa : 234642 307 : alLeuProMetGlyThrTyrPheValLeuMetThrSerMetTyrIleAsnValTyrIl : 325 ::||| ::: ::: !!! !|||.!! !!! :! leLeuArgIle***SerAsn***PheLysTyrPheArgLysTyrPheLeuPheLeuLe 234643 : ttcttcgaatttaatcaaactaatttaaatactttaGAAAGTATTTCTTGTTCTTATT : 234699 326 : eIleSerAlaIleGlyAspArgLeuLysGluGluSerGluLysValGlyGluSerSer : 344 !! ! !|||:!!..! !!.!:!!!!.|||:!!||| ! !! ! !! :::... uSerLeuAlaValAsnIleAsnValAsnGluGlnSerThrTrpAspArgTyrThrGlu 234700 : AAGTCTTGCAGTTAATATCAATGTTAACGAACAAAGTACATGGGATCGGtacactgaa : 234756 345 : TyrPheIleGluTrp : 349 |||||||||::: IlePheIleGluPhe 234757 : attttcatcgaattt : 234773 vulgar: CbirOr2 11 349 . KQ414889.1 232432 234773 + 279 M 152 456 G 0 3 M 80 240 G 0 3 M 6 18 G 0 6 M 16 48 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232433 234773 279 + . gene_id 3 ; sequence CbirOr2 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232433 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232433 233208 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234773 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234773 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232433 234773 279 + . alignment_id 3 ; Query CbirOr2 ; Align 232433 12 456 ; Align 232892 164 240 ; Align 233135 244 18 ; Align 233159 250 48 ; Align 234525 267 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 271 Query range: 13 -> 298 Target range: 226909 -> 228172 14 : AspTyrLysSerAspThrAspTyrValIleLysValAlaLysThrLeuLeuThrProV : 33 ||||||:!!..! !! !:!! !|||:!!:!! !::: !||||||! !|||: AspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProL 226910 : GACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCAC : 226967 34 : alGlyIleTrpProLeuTyrArgGlyAsnSerThrSerAspLysIleLysAsnPheLe : 52 !!||||||||||||! !! ||| !!:!||| !! !! !:! ! ::!!::|| euGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLe 226968 : TCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTT : 227024 53 : uGlnThrGlyValIlePheCysLeuMetCysPheLeuLeuValProHisValIleTyr : 71 |..! ! !:!! !!:!...|||||| !!||| !|||||| !! !! !:!:||| uMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyr 227025 : GATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTAC : 227081 72 : ThrPhePheAspAlaGluAspLeuSerArgTyrMetLysValIleGlyAlaGlnValP : 91 ..! !!.!.!!:!.!:!!! ! !! !!.! :!!|||:!!|||||| !!..! !| ValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerP 227082 : GTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCT : 227141 92 : heSerLeuLeuAlaIleIleLysPheTrpThrMetIleIleAsnArgGluGlyIleAr : 110 ||! ! !:!!:!!:!!:!!|||!:!! ! !:!!! .!!:!!..!!!:! !|||! hePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLe 227142 : TCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCT : 227198 111 : gTyrCysLeuGlnGlnMetGluIleGlnTyrArgAspValGluCysGluGluAspArg : 129 ! ! |||:!!:!!!:!!!::!! .!.!::!:!:!!:!!..!! ! !||||||||| uGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArg 227199 : CGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGA : 227255 130 : LeuValMetThrAsnSerAlaLysIleGlyArgLeuPheThrValAlaTyrLeuGlyL : 149 !||||||..!!..! !||| ! !|||||| !!!.! !..! !! ! ! !! AsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPheP 227256 : AACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTT : 227315 150 : euSerTyrGlyGlyAlaLeuProTyrHisIleIleMetProLeuLeuAlaAspArgVa : 168 !! !!:!...... ::: ::::::|||:!!:!:|||:!! !|||! !!!|| heValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerVa 227316 : TCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGT : 227372 169 : lValLysSerAsp<->AsnThrThrGlnIleProLeuProTyrLeuSerAsnTyrIle : 186 |!.!! !..!||| ||| !!:! ! |||! !:!!|||!:!! !! ! ! ||| lAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIle 227373 : TGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATC : 227429 187 : PhePheValValGluAspSerProLeuTyrGluIleValPheValSerGlnIlePheI : 206 .!! !! !|||... !!||||||!!! !!|||||| !!||| ! !|||.!! ! ! IleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValT 227430 : ATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAA : 227489 207 : leSerSerIleIleLeuSerThrAsnCysGlyValTyrSerLeuIleAlaThrCysVa : 225 !.!!! !:!::!:! !.!!..!!..! !.!!.!! !|||:!! !||| ! !!. hrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAl 227490 : CAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGC : 227546 226 : lMetHisGlyCysCysLeuPheGluValValArgArgLysMetGluThrIleLeuSer : 244 !:!:|||!.!||| !!! !.!.||||||:!! ! ! !:!!! ! !:!::!!..! aValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAsp 227547 : GGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGAC : 227603 245 : AsnGlyThrAsp<-><-><->AspLeuHisArgArgLeuGlyGlnValIleGluHisH : 261 ..! !!.!!||| ||| !! !|||:!!!.!...:!!:!! |||| GlyArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValThrHisH 227604 : GGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACC : 227663 262 : isIleGlnAlaIle{Ar} >>>> Target Intron 1 >>>> {g}PheAlaGl : 269 ||:!!!:! !:!:{!.} 396 bp {!}||| !! isValArgIleLeu{As}++ ++{n}PheLeuAl 227664 : ACGTTCGAATATTG{AA}gt.........................ag{C}TTTCTGGC : 228083 270 : uMetIleGluLysSerLeuAsnIleValPheLeuCysGluMetValGlyCysThrVal : 288 :!:|||||||||!!!:!!.!. !:!! !!!! |||.!.:!!|||||||||:!! aLeuIleGluLysThrMetGlnGlnIleAlaPheValGluPheLeuGlyCysThrIle 228084 : CCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGTACAATA : 228140 289 : IleIleCysPheLeuGluPheGlyValLeu : 298 |||:!:|||.!!:!!|||!:! !:!!:!! IleLeuCysLeuIleGluTyrTyrIleIle 228141 : ATTCTGTGCCTCATCGAGTATTACATCATA : 228172 vulgar: CbirOr2 13 298 . KQ414889.1 226909 228172 + 271 M 159 477 G 0 3 M 76 228 G 0 9 M 17 51 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226910 228172 271 + . gene_id 4 ; sequence CbirOr2 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226910 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226910 227679 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228172 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228172 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226910 228172 271 + . alignment_id 4 ; Query CbirOr2 ; Align 226910 14 477 ; Align 227390 173 228 ; Align 227627 249 51 ; Align 228077 267 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 266 Query range: 15 -> 243 Target range: 204221 -> 204902 16 : LysSerAspThrAspTyrValIleLysValAlaLysThrLeuLeuThrProValGlyI : 35 :!!..!||| ! |||!.!! !::: !!!.!||| !!:!!||| ! !|||||| GluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyA 204222 : GAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTG : 204279 36 : leTrpProLeuTyrArgGlyAsnSerThrSerAspLysIleLysAsnPheLeuGlnTh : 54 ||||||:!! !..!::!||| !!! ! !:!:!! !... :!!:!! laTrpProIleProValAsnSerSerProPheThrArgLeuValArgArgIleGluHi 204280 : CGTGGCCGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACA : 204336 55 : rGlyValIlePheCysLeuMetCysPheLeuLeuValProHisValIleTyrThrPhe : 73 !! !|||! !::: |||... ...:!!:!!|||||| !:!!:!:|||..!||| sValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPhe 204337 : CGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTC : 204393 74 : PheAspAlaGluAspLeuSerArgTyrMetLysValIleGlyAlaGlnValPheSerL : 93 .!. ! ! !:!!:!! !!.!! ! !:!!|||:!!:!!||| !! ||| !!!! LeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysS 204394 : CTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCA : 204453 94 : euLeuAlaIleIleLysPheTrpThrMetIleIleAsnArgGluGlyIleArgTyrCy : 112 !:!! !.!!.!!|||!:!! ..!!!::!! !...! !!!: !|||!:! ! ! erIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSe 204454 : GCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAG : 204510 113 : sLeuGlnGlnMetGluIleGlnTyrArgAspValGluCysGluGluAspArgLeuVal : 131 !|||.!. !!:..! !.!.!::! !!!:!.! !!:|||:!!||||||:!! rLeuAsnThrIleArgArgAspTrpIleGluAla---ThrAspGluAsnArgLeuIle 204511 : TTTGAACACCATCAGACGCGACTGGATAGAGGCT---ACGGATGAAAATCGGTTGATT : 204564 132 : MetThrAsnSerAlaLysIleGlyArgLeuPheThrValAlaTyrLeuGlyLeuSerT : 151 .!. !:::!.!||||||||||||||| ! ! !:!! ! !!.! !! !| PheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetT 204565 : TTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGT : 204624 152 : yrGlyGlyAlaLeuProTyrHisIleIleMetProLeuLeuAlaAspArgValValLy : 170 ||||||||!.!||| !|||...! |||:!:||||||||| !! ! !:!!|||! yrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleValTh 204625 : ACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTAAC : 204681 171 : sSerAspAsnThrThrGlnIleProLeuProTyrLeuSerAsnTyrIlePhePheVal : 189 ! !!||||||..!||| !! |||||||||! !! ! ! ::::::|||||| rProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePheAsn 204682 : ACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaac : 204738 190 : ValGluAspSerProLeuTyrGluIleValPheValSerGlnIlePheIleSerSerI : 209 ! !:!! !|||||| !|||||||||||||||:!! !||||||.!. !.!!! !: GluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheV 204739 : GAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTG : 204798 210 : leIleLeuSerThrAsnCysGlyValTyrSerLeuIleAlaThrCysValMetHisGl : 228 !!! !! !:!!..!! ! !!|||..!! !.!!:!! !||| !! !|||:!:|||!. alThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAl 204799 : TTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGC : 204855 229 : yCysCysLeuPheGluValValArgArgLysMetGluThrIleLeu : 243 !||| !!:!!.!...!:!!:!! !!.!||||||.!..!!:!!:!! aCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuVal 204856 : GTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTG : 204902 vulgar: CbirOr2 15 243 . KQ414889.1 204221 204902 + 266 M 108 324 G 1 0 M 119 357 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204222 204902 266 + . gene_id 5 ; sequence CbirOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204222 204902 . + . KQ414889.1 exonerate:protein2genome:local exon 204222 204902 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 204222 204902 266 + . alignment_id 5 ; Query CbirOr2 ; Align 204222 16 324 ; Align 204546 125 357 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 230 Query range: 14 -> 243 Target range: 278558 -> 279257 15 : TyrLysSerAspThrAspTyrValIleLysValAlaLysThrLeuLeuThrProValG : 34 !::!!.!!!||| ! ||| !:!!:!!:!! !::: !!!!|||! !|||:!!| TrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleG 278559 : TGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTG : 278616 35 : lyIleTrpProLeuTyrArgGlyAsnSerThrSerAspLysIleLysAsnPheLeuGl : 53 ||:!!||||||||| !! ! !! !!!|||! !!!:||||||!..::! ! :!!! lyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLe 278617 : GCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCT : 278673 54 : nThrGlyValIlePheCysLeuMetCysPheLeuLeuValProHisValIleTyrThr : 72 .!! !:!!! !! !! !|||!!: !!||||||||||||||| !!.!:!:! !||| uAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThr 278674 : CGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACA : 278730 73 : PhePheAsp<->AlaGluAspLeuSerArgTyrMetLysValIleGlyAlaGlnValP : 91 ! .!!||| .!!! ||||||..!! ! ! !!:|||:!!|||||| !!! ! !| ValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerP 278731 : GTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTT : 278790 92 : heSerLeuLeuAlaIleIleLysPheTrpThrMetIleIleAsnArgGluGlyIleAr : 110 ||!!! !:!!|||! ||||||!:!!::! !:!:!!: ..! !!! !||| ! heCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGl 278791 : TCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGG : 278847 111 : gTyrCysLeuGlnGlnMetGluIleGlnTyrArg<-><-><->AspValGluCysGlu : 126 ! ! |||:!!.!..!.!!:...! .!.!:: ! ... !... ||| yLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGlu 278848 : CAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaa : 278904 127 : GluAspArgLeuValMetThrAsnSerAlaLysIleGlyArgLeuPheThrValAlaT : 146 |||:::||| :::|||! !:!!||||||!:!|||||||||! !!!..!!:!! ! GluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheS 278905 : gaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCA : 278964 147 : yrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleMetProLeuLeuAl : 165 ! !|||!!!! !|||..!|||!.!:!! !||| ! !:!:|||||||||!!!|| erAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAl 278965 : GCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGC : 279021 166 : aAspArgValValLysSerAspAsnThrThrGlnIleProLeuProTyrLeuSerAsn : 184 |! |||..!! !! ! !|||||| !||| !! ! !!! ! !!!:!! !! ! !! aValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyr 279022 : AGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTAT : 279078 185 : TyrIlePhePheValValGluAspSerProLeuTyrGluIleValPheValSerGlnI : 204 ! !.!!.!!! ! !... !||||||! !!:!||||||||| !!! !||| ArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnC 279079 : CGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAAT : 279138 205 : lePheIleSerSerIleIleLeuSerThrAsnCysGlyValTyrSerLeuIleAlaTh : 223 !!!. !:!!! !:!!:!!! !|||..!!.! !|||!.!! !||||||||||||.. ysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaVa 279139 : GCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGT : 279195 224 : rCysValMetHisGlyCysCysLeuPheGluValValArgArgLysMetGluThrIle : 242 !! !|||||||||! !||| ! ! !|||..!:!!:!! !! !|||:!!!!:! !:!! lPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeu 279196 : GTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTC : 279252 243 : Leu : 243 :!! Ile 279253 : ATC : 279257 vulgar: CbirOr2 14 243 . KQ414889.1 278558 279257 + 230 M 61 183 G 0 3 M 46 138 G 0 9 M 122 366 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278559 279257 230 + . gene_id 6 ; sequence CbirOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278559 279257 . + . KQ414889.1 exonerate:protein2genome:local exon 278559 279257 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278559 279257 230 + . alignment_id 6 ; Query CbirOr2 ; Align 278559 15 183 ; Align 278745 76 138 ; Align 278892 122 366 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 228 Query range: 15 -> 199 Target range: 294672 -> 295227 16 : LysSerAspThrAspTyrValIleLysValAlaLysThrLeuLeuThrProValGlyI : 35 !:!!:!|||..!! !! !:!!||| !..!::!! !||||||! !|||:!!|||: ArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyL 294673 : AGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTC : 294730 36 : leTrpProLeu<->TyrArgGlyAsnSerThrSerAspLysIleLysAsnPheLeuGl : 53 !!||||||||| |||!!! !!.!|||! ! !:!!|||:!! :::.!.:!!! euTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLe 294731 : TTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCT : 294787 54 : nThrGlyValIlePheCysLeuMetCysPheLeuLeuValProHisValIleTyrThr : 72 !! !!.! ! ! ! !:!: |||:!!||||||||| !! ! !!:! ! uIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCys 294788 : GATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGT : 294844 73 : PhePheAspAlaGluAspLeuSerArgTyrMetLysValIleGlyAlaGlnValPheS : 92 ! ||| !!!..:::::::::... ||||||:!!:!:||| !! !:!!!:!| ValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrS 294845 : GTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACT : 294904 93 : erLeuLeuAlaIleIleLysPheTrpThrMetIleIleAsnArgGluGlyIleArgTy : 111 ||:!!|||:!!!!::!!!:!!:! ! !:!::!!:!:!!.! ! !.!.!!!:!:! erMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHi 294905 : CTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCA : 294961 112 : rCysLeuGlnGlnMetGluIleGlnTyrArgAspValGluCysGluGluAspArgLeu : 130 !|||:!!:!!.!.!!:|||! !.!.!::!:! :!!!!: ! !||| !!||| ! sCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAla 294962 : TTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCG : 295018 131 : ValMetThrAsnSerAlaLysIleGlyArgLeuPheThrValAlaTyrLeuGlyLeuS : 150 :!!|||! !!!.!:!|||! !:!! !!:! !.!.|||||||||!:! ! !:!!! IleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleI 295019 : ATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAA : 295078 151 : erTyrGlyGlyAlaLeuProTyrHisIleIleMetProLeuLeuAlaAspArgValVa : 169 !|||.!!..!|||:!! !!|||||| !|||:::|||......:::::: :!!! leTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGl 295079 : TCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGA : 295135 170 : lLysSerAspAsnThrThrGlnIleProLeuProTyrLeuSerAsnTyrIlePhePhe : 188 !!!.!.! ! |||!.!||| ! !!|||||| !! !.!! !! ! :!!||| ! uAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheVal 295136 : GAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTA : 295192 189 : ValValGluAspSerProLeuTyrGluIleVal : 199 ! !!.! ! ..!|||||| !|||||||||:!! AspAlaTyrSerSerProThrTyrGluIleIle 295193 : GACGCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: CbirOr2 15 199 . KQ414889.1 294672 295227 + 228 M 23 69 G 0 3 M 161 483 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294673 295227 228 + . gene_id 7 ; sequence CbirOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294673 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294673 295227 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294673 295227 228 + . alignment_id 7 ; Query CbirOr2 ; Align 294673 16 69 ; Align 294745 39 483 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 227 Query range: 14 -> 243 Target range: 284505 -> 286207 15 : TyrLysSerAspThrAspTyrValIleLysValAlaLysThrLeuLeuThrProValG : 34 !:: ! !!!||| ! ||| !:!!:!!:!! !::: !!!!|||! !|||:!!| TrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleG 284506 : TGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTG : 284563 35 : lyIleTrpProLeuTyrArgGlyAsnSerThrSerAspLysIleLysAsnPheLeuGl : 53 ||:!!||||||||| !! ! !! !!!|||! !!!:||||||!..::! ! :!!! lyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLe 284564 : GCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCT : 284620 54 : nThrGlyValIlePheCysLeuMetCysPheLeuLeuValProHisValIleTyrThr : 72 .!! !:!!! !! !! !|||!!: !!||||||||||||||| !!.!:!:! !||| uAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThr 284621 : CGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACA : 284677 73 : PhePheAsp<->AlaGluAspLeuSerArgTyrMetLysValIleGlyAlaGlnValP : 91 ! .!!||| .!!! ||||||..!! ! ! !!:|||:!!|||||| !!! ! !| ValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerP 284678 : GTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTT : 284737 92 : heSerLeuLeuAlaIleIleLysPheTrpThrMetIleIleAsnArgGluGlyIleAr : 110 ||!!!:!!:!!||| ||||||!:!!::! !:!:||| ..! !!! !||| ! heCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGl 284738 : TCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGG : 284794 111 : gTyrCysLeuGlnGlnMetGluIleGln{Ty} >>>> Target Intron 1 >>> : 120 ! ! |||:!!:!!.!.!!:... .!.{!:} 1012 bp yGlnCysValLysAspIleArgAlaAsp{Tr}++ 284795 : CCAATGCGTGAAGGACATTCGTGCGGAC{TG}gt........................ : 284828 121 : > {r}ArgAspValGluCysGluGluAspArgLeuValMetThrAsnSerAlaLysI : 138 {:}! !... !... ||||||:::||| :::|||! !:!!||||||!:!| +-{p}LeuSerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgI 284829 : .ac{G}CTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAA : 285890 139 : leGlyArgLeuPheThrValAlaTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTy : 157 ||||||||! !!!..!!:!! !! ! !|||!!!! !|||..!|||!.!!!! !|| leGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTy 285891 : TTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTA : 285947 158 : rHisIleIleMetProLeuLeuAlaAspArgValValLysSerAspAsnThrThrGln : 176 | !! :!:|||||||||! !.!!! |||..!! !! ! !|||||| !||| ! rThrThrValMetProLeuCysThrValArgThrGluIleIleAspAsnGluThrVal 285948 : CACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTG : 286004 177 : IleProLeuProTyrLeuSerAsnTyrIlePhePheValValGluAspSerProLeuT : 196 ! ! !!! ! !!!:!! !! ! !! ! !.!!.!!! ! !... !||||||! !! ArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerP 286005 : AGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGT : 286064 197 : yrGluIleValPheValSerGlnIlePheIleSerSerIleIleLeuSerThrAsnCy : 215 :!||||||||| !!! !||| !!!. !:!!! !:!!|||! !|||..!!.! heGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrVa 286065 : TCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGT : 286121 216 : sGlyValTyrSerLeuIleAlaThrCysValMetHisGlyCysCysLeuPheGluVal : 234 !|||!.!! !|||||| !|||..!! !|||||||||! !||| ! ! !|||..!:!! lGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIle 286122 : TGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATA : 286178 235 : ValArgArgLysMetGluThrIleLeu : 243 :!! !! !|||:!!!!:! !:!!:!! LeuValThrLysLeuAspLysLeuVal 286179 : CTTGTGACAAAGCTGGATAAGCTCGTC : 286207 vulgar: CbirOr2 14 243 . KQ414889.1 284505 286207 + 227 M 61 183 G 0 3 M 44 132 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 123 369 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284506 286207 227 + . gene_id 8 ; sequence CbirOr2 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284506 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284506 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286207 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286207 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284506 286207 227 + . alignment_id 8 ; Query CbirOr2 ; Align 284506 15 183 ; Align 284692 76 132 ; Align 285839 121 369 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 217 Query range: 13 -> 227 Target range: 274362 -> 275007 14 : AspTyrLysSerAspThrAspTyrValIleLysValAlaLysThrLeuLeuThrProV : 33 :!!!:! ! ||| !!:!|||||| !:!::!!:!! !::! !!!!|||! !|||: AsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 274363 : AATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTA : 274420 34 : alGlyIleTrpProLeuTyrArgGlyAsnSerThrSerAspLysIleLysAsnPheLe : 52 !!||| ||||||||| ! ! !!.!!!!! !! !!!:::!||| ::: !|| leGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLeuSerHisLe 274421 : TAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCt : 274477 53 : uGlnThrGlyValIlePheCysLeuMetCysPheLeuLeuValProHisValIleTyr : 71 | ::: ::!|||!!!!!: !! ! !:!!:!!||| !:!!.!!:!! uLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIlePheHis 274478 : tttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCAC : 274534 72 : ThrPhePheAspAlaGluAspLeuSerArgTyrMetLysValIleGlyAlaGlnValP : 91 ! !.!..!.! ! !|||..!||| !! ! ! :!!|||:!!:!!||| !!! ! ! IleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyH 274535 : ATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTC : 274594 92 : heSerLeuLeuAlaIleIleLysPheTrpThrMetIleIleAsnArgGluGlyIleAr : 110 !!!!!!!:!!!.! !|||!!.!:! |||:!!:!::!!..!!!!:!!! !||||| isTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleAr 274595 : ACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACG : 274651 111 : gTyrCysLeuGlnGlnMetGluIleGlnTyrArgAspValGluCysGluGluAspArg : 129 | !|||:!!:!!!!.|||:!!! !.!.!::||| !||| ! !||||||!:! gGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAspGln 274652 : CGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAA : 274708 130 : LeuValMetThrAsnSerAlaLysIleGlyArgLeuPheThrValAlaTyrLeuGlyL : 149 ! !|||||| !!!.!:!|||||||||||||||! ! !!.!!:!! !! ! !!.!! GlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaP 274709 : CAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGT : 274768 150 : euSerTyrGlyGlyAlaLeuProTyrHisIleIleMetProLeuLeuAlaAspArgVa : 168 !!! ! ! !!|||!.!||| !||| !:!:|||! !!!!! ! !.!.! !|| heMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGlnThrVa 274769 : TCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGT : 274825 169 : l<->ValLysSerAspAsnThrThrGlnIleProLeuProTyrLeuSerAsnTyrIle : 186 | ||| !!:!!!:!.!! !||| ! ! !||||||! ! !:!! !! ! ! lGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLysLys 274826 : TCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAG : 274882 187 : PhePheValValGluAspSerProLeuTyrGluIleValPheValSerGlnIlePheI : 206 .!! !!!.!|||!!: |||||| ! !!|||||||||.!!!.!||||||.!! ! IleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnPheValS 274883 : ATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGT : 274942 207 : leSerSerIleIleLeuSerThrAsnCysGlyValTyrSerLeuIleAlaThrCysVa : 225 .!!! !|||:!: !|||!:! !|||!.!!:!|||||| !|||..!! !!. erGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAl 274943 : CGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGC : 274999 226 : lMetHis : 227 ! ||| aAlaHis 275000 : GGCACAC : 275007 vulgar: CbirOr2 13 227 . KQ414889.1 274362 275007 + 217 M 155 465 G 0 3 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274363 275007 217 + . gene_id 9 ; sequence CbirOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274363 275007 . + . KQ414889.1 exonerate:protein2genome:local exon 274363 275007 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274363 275007 217 + . alignment_id 9 ; Query CbirOr2 ; Align 274363 14 465 ; Align 274831 169 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 119 -> 266 Target range: 304425 -> 304869 120 : TyrArgAspValGluCysGluGluAspArgLeuValMetThrAsnSerAlaLysIleG : 139 |||..!.!.||||||! ! ..!|||||| !:!!||| !!!.! !!.!:!!!!:| TyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetG 304426 : TATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGG : 304483 140 : lyArgLeuPheThrValAlaTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHi : 158 ||||| !.!.|||:!! !! ! ! !!!!! !||| !|||!.! ! !||||| lyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHi 304484 : GTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCA : 304540 159 : sIleIleMetProLeuLeuAlaAspArgValValLysSerAspAsnThrThrGlnIle : 177 |! :!!|||! !!!! !.!!! ! ! !||| ! ..! !!||| !||| ! ! sThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgThrIleLys 304541 : CACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAA : 304597 178 : ProLeuProTyrLeuSerAsnTyrIlePhePheValValGluAspSerProLeuTyrG : 197 |||||| !|||! !!!! !! ! !!!.|||! !|||:!! ||||||:!!|||| ProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIleTyrG 304598 : CCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACG : 304657 198 : luIleValPheValSerGlnIlePheIleSerSerIleIleLeuSerThrAsnCysGl : 216 ||:!:|||!:! !! !!!. !.!. !.!!! !:!!|||! !|||! !!.!..!|| luLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThrAlaGl 304658 : AATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGG : 304714 217 : yValTyrSerLeuIleAlaThrCysValMetHisGlyCysCysLeuPheGluValVal : 235 |!.!! !.!!||| !||| !! !!.!! |||!.!||| ! ! !.!!!!::!!||| yAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleVal 304715 : TGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTT : 304771 236 : ArgArgLysMet<->GluThrIleLeuSerAsnGlyThrAspAspLeuHisArgArgL : 254 ! ! !::!:!! !!: !:!! !|||!!.! !:!!..!|||||| !!!:!|||| MetSerArgLeuGlyAspLeuValAsnSerLysGluSerSerAspLeuAspLysArgL 304772 : ATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCATCTGATTTAGATAAACGAT : 304831 255 : euGlyGlnValIleGluHisHisIleGlnAlaIleArg : 266 || !:!!:!!:!!|||||||||:!:!:! !:!!||| euIleGluIleValGluHisHisLeuArgIleLeuArg 304832 : TAATAGAAATTGTTGAGCATCATTTGCGAATTTTAAGG : 304869 vulgar: CbirOr2 119 266 . KQ414889.1 304425 304869 + 183 M 120 360 G 0 3 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304426 304869 183 + . gene_id 10 ; sequence CbirOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304426 304869 . + . KQ414889.1 exonerate:protein2genome:local exon 304426 304869 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304426 304869 183 + . alignment_id 10 ; Query CbirOr2 ; Align 304426 120 360 ; Align 304789 240 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 338 -> 398 Target range: 287069 -> 287249 339 : LysValGlyGluSerSerTyrPheIleGluTrpTyrAsnLeuProThrAsnIleValG : 358 ||||||||| !|||!!!|||.!.|||!!:||||||..!|||||| !!!.! !!.! LysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaG 287070 : AAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTC : 287127 359 : lyTyrLeuIleLeuMetIleIleArgSerGlyArgProSerThrLeuThrAlaAlaLy : 377 ! !|||||||||!!:.!! ! !|||..! ! !!! !! !|||||||||!.!|| lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 287128 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 287184 378 : sIlePheAspLeuSerLeuGlnGlyPheCysGluValCysLysThrSerAlaAlaTyr : 396 ||||.!!||||||||||||....!!||||||...||| !!! ! !!:! !:!!||| sIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 287185 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 287241 397 : PheAsn : 398 !:!:!! TyrHis 287242 : TATCAT : 287249 vulgar: CbirOr2 338 398 . KQ414889.1 287069 287249 + 125 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287070 287249 125 + . gene_id 11 ; sequence CbirOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287070 287249 . + . KQ414889.1 exonerate:protein2genome:local exon 287070 287249 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287070 287249 125 + . alignment_id 11 ; Query CbirOr2 ; Align 287070 339 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 338 -> 398 Target range: 280282 -> 280462 339 : LysValGlyGluSerSerTyrPheIleGluTrpTyrAsnLeuProThrAsnIleValG : 358 |||||||||! !|||!!!|||.!.|||!!:||||||..!|||||| !!!.! !!.! LysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaG 280283 : AAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCAC : 280340 359 : lyTyrLeuIleLeuMetIleIleArgSerGlyArgProSerThrLeuThrAlaAlaLy : 377 ! !|||||||||!!:.!! ! !|||..! ! !!! !! !|||||||||!.!|| lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 280341 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 280397 378 : sIlePheAspLeuSerLeuGlnGlyPheCysGluValCysLysThrSerAlaAlaTyr : 396 ||||.!!||||||||||||....!!||||||...||| !!! ! !!:! !:!!||| sIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 280398 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 280454 397 : PheAsn : 398 !:!:!! TyrHis 280455 : TATCAT : 280462 vulgar: CbirOr2 338 398 . KQ414889.1 280282 280462 + 124 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280283 280462 124 + . gene_id 12 ; sequence CbirOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280283 280462 . + . KQ414889.1 exonerate:protein2genome:local exon 280283 280462 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280283 280462 124 + . alignment_id 12 ; Query CbirOr2 ; Align 280283 339 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 335 -> 393 Target range: 297641 -> 297815 336 : GluSerGluLysValGlyGluSerSerTyrPheIleGluTrpTyrAsnLeuProThrA : 355 :!!:!!|||||| !!|||.!.:!!:!!||| !||||||||||||||||||||| !!| GlnAlaGluLysPheGlyAsnAlaAlaTyrAsnIleGluTrpTyrAsnLeuProProA 297642 : CAGGCTGAAAAATTCGGCAATGCAGCTTATAACATCGAATGGTACAACTTACCGCCAA : 297699 356 : snIleValGlyTyrLeuIleLeuMetIleIleArgSerGlyArgProSerThrLeuTh : 374 ||! !.! ! !!|||:!:||||||||| !! !:!! ! !||| !!! !||||| snArgAlaLeuAspLeuValLeuMetIleGlyIleAlaLysPheProProArgLeuTh 297700 : ACAGGGCTCTCGATCTGGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCAC : 297756 375 : rAlaAlaLysIlePheAspLeuSerLeuGlnGlyPheCysGluValCysLysThrSer : 393 |......||||||||||||:::|||:!!.!. !||| !!! ||| !!!:: ||| rGlyGlyLysIlePheAspIleSerIleAsnThrPheSerAlaValArgArgGlnSer 297757 : AggtggaaaaatattcgatatatCGATAAACACGTTCAGTGCCGTACGTAgacaaagt : 297813 vulgar: CbirOr2 335 393 . KQ414889.1 297641 297815 + 123 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297642 297815 123 + . gene_id 13 ; sequence CbirOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297642 297815 . + . KQ414889.1 exonerate:protein2genome:local exon 297642 297815 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297642 297815 123 + . alignment_id 13 ; Query CbirOr2 ; Align 297642 336 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 337 -> 389 Target range: 301880 -> 302036 338 : GluLysValGlyGluSerSerTyrPheIleGluTrpTyrAsnLeuProThrAsnIleV : 357 ...:!!:!!|||..!:!!|||||| |||!!:|||||||||||||||.!!!!.! !! SerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgA 301881 : AGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAG : 301938 358 : alGlyTyrLeuIleLeuMetIleIleArgSerGlyArgProSerThrLeuThrAlaAl : 376 .! ! !!|||||||||:!:! !:!:! !||| ! !||| !!! !|||||||||!. laTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGl 301939 : CATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGG : 301995 377 : aLysIlePheAspLeuSerLeuGlnGlyPheCysGluVal : 389 !||||||.!!||||||||||||.!. !||| !!...||| yLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301996 : GAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: CbirOr2 337 389 . KQ414889.1 301880 302036 + 115 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301881 302036 115 + . gene_id 14 ; sequence CbirOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301881 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301881 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301881 302036 115 + . alignment_id 14 ; Query CbirOr2 ; Align 301881 338 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 338 -> 393 Target range: 254280 -> 254445 339 : LysValGlyGluSerSerTyrPheIleGluTrpTyrAsnLeuProThrAsnIleValG : 358 |||||||||||| ! !|||.!.! !!!:|||||| !!|||||| !!..! !:!! LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 254281 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 254338 359 : lyTyrLeuIleLeuMetIleIleArgSerGlyArgProSerThrLeuThrAlaAlaLy : 377 ! !!|||||||||!!:|||! !||||||..! ! ! ! !:!!||||||...|| euAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLy 254339 : TCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaa : 254395 378 : sIlePheAspLeuSerLeuGlnGlyPheCysGluValCysLysThrSer : 393 ||||||| :::|||||| ! !||| !!!!:||| !!:!!|||!:! sIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 254396 : aatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 254445 vulgar: CbirOr2 338 393 . KQ414889.1 254280 254445 + 107 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254281 254445 107 + . gene_id 15 ; sequence CbirOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254281 254445 . + . KQ414889.1 exonerate:protein2genome:local exon 254281 254445 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254281 254445 107 + . alignment_id 15 ; Query CbirOr2 ; Align 254281 339 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14725 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 306 Query range: 90 -> 212 Target range: 1707349 -> 1707706 91 : TyrIlePheGluCysThrPheIlePheGlnThrSerCysMetIleMetTyrGlyIl : 109 |||! ! ! !||| !!!. .!.|||..!! ! !:!:!!: ! !!|| TyrThrSerLeuCysLeuLeuSerLeuGlnValPheIleValMetTyrValCysIl 1707350 : TACACCAGTTTATGTCTGTTATCGCTACAGGTTTTTATCGTAATGTACGTTTGCAT : 1707404 110 : eGlyTyrLeuCysValAspAsnPheLeuCysIleThrAsnLeuGlnAlaAlaThrG : 128 |.!!|||||||||:!!|||||||||||||||!!:! !||||||!!..!!||||||| eSerTyrLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrG 1707405 : AAGCTACCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTC : 1707461 129 : lnPheArgIleLeuGlnTyrArgIleAlaAsnIleArgLysAspAsnAspThrLys : 146 |||||||||||||||||||||||:!::!!|||:!: !! ! |||!!: !!.. lnPheArgIleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAsnGluArgSer 1707462 : AATTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAACGAACGTAgc : 1707515 147 : GluHisSerGlyIleSerArgSerLeuProAlaTyrHisAlaAspHisCysTyrAl : 165 ::: ||||||:::... |||:!! :!!:!!|||.!.|||||||| AspLys------IleSerLysLysThrProSer---AsnSerAspGluCysTyrAl 1707516 : gataaa------atttcgaaaaaaacaCCGTCC---AATTCGGACGAATGCTACGC : 1707563 166 : aValPheLysAspCysIleLysGlnHisGlnAlaLeuIleSerTyrCysArgLysV : 184 | !||||||:!!||||||:!!||||||||||||||||||..!||||||!.!:!!: aLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluL 1707564 : TAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAAC : 1707620 185 : alGluGluLeuPheThrLeuIleValLeuGlyGlnValLeuIlePheSerIleLeu : 202 !!:!!|||:!!||| !|||.!!||||||!.!|||||||||:!!||||||:!:||| euGlnGluValPheGlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeu 1707621 : TTCAAGAGGTGTTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTA : 1707674 203 : IleCysLeuAspGlyTyrLeuMetLeuLeu : 212 !!:||||||||||||||||||:!!:!!:!! MetCysLeuAspGlyTyrLeuValMetVal 1707675 : ATGTGCCTCGATGGATATTTGGTGATGGTT : 1707706 vulgar: Lalb_14725 90 212 . KQ414915.1 1707349 1707706 + 306 M 58 174 G 2 0 M 7 21 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707350 1707706 306 + . gene_id 1 ; sequence Lalb_14725 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1707350 1707706 . + . KQ414915.1 exonerate:protein2genome:local exon 1707350 1707706 . + . insertions 0 ; deletions 3 KQ414915.1 exonerate:protein2genome:local similarity 1707350 1707706 306 + . alignment_id 1 ; Query Lalb_14725 ; Align 1707350 91 174 ; Align 1707524 151 21 ; Align 1707545 159 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14725 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 295 Query range: 99 -> 213 Target range: 1702013 -> 1702355 100 : GlnThrSerCysMetIleMetTyrGlyIleGlyTyrLeuCysValAspAsnPheLe : 118 |||..! !! !:!! ! !|||:!! !!|||:!!||| !!||||||.!!|| GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 119 : uCysIleThrAsnLeuGlnAlaAlaThrGlnPheArgIleLeuGlnTyrArgIleA : 137 ||||:!:! !||||||!!.|||||||||||||||||||||||||||||||||:!!: uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 138 : laAsnIleArgLysAspAsnAspThrLysGluHisSerGlyIleSerArgSerLeu : 155 !!|||:!: !! ! ||| ! !:!!! ! !!..!..! !|||!!!:!! ! erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1702179 156 : ProAlaTyrHisAlaAspHisCysTyrAlaValPheLysAspCysIleLysGlnHi : 174 ! !:!! ! !|||!!::!!|||||| !!.!||||||:!!|||:!!::!||||| LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHi 1702180 : CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACA : 1702236 175 : sGlnAlaLeuIleSerTyrCysArgLysValGluGluLeuPheThrLeuIleValL : 193 |||| !! !|||!!!||||||!.!!:!:!!.!.|||:!!||||||:!!||||||| sGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValL 1702237 : TCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTAC : 1702293 194 : euGlyGlnValLeuIlePheSerIleLeuIleCysLeuAspGlyTyrLeuMetLeu : 211 |||||!!.:!!|||:!!||||||:!!||||||||||||! !|||!:!! !:!!||| euGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeu 1702294 : TCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTC : 1702347 212 : LeuVal : 213 :!!||| ValVal 1702348 : GTGGTA : 1702355 vulgar: Lalb_14725 99 213 . KQ414915.1 1702013 1702355 + 295 M 114 342 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1702355 295 + . gene_id 2 ; sequence Lalb_14725 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702014 1702355 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702355 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1702355 295 + . alignment_id 2 ; Query Lalb_14725 ; Align 1702014 100 342 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14725 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 293 Query range: 99 -> 215 Target range: 1699632 -> 1699980 100 : GlnThrSerCysMetIleMetTyrGlyIleGlyTyrLeuCysValAspAsnPheLe : 118 |||..! !! !:!! ! !|||:!! !!|||:!!||| !!||||||.!!|| GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1699633 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1699687 119 : uCysIleThrAsnLeuGlnAlaAlaThrGlnPheArgIleLeuGlnTyrArgIleA : 137 ||||:!:! !||||||!!.|||||||||||||||||||||||||||||||||:!!: uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1699688 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1699744 138 : laAsnIleArgLysAspAsnAspThrLysGluHisSerGlyIleSerArgSerLeu : 155 !!|||:!: !! ! ||| ! !:!!! ! !!..!..! !|||!!!:!! ! erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1699745 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1699798 156 : ProAlaTyrHisAlaAspHisCysTyrAlaValPheLysAspCysIleLysGlnHi : 174 ! !:!! ! !|||!!::!!|||||| !!.!||||||:!!|||:!!::!||||| LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHi 1699799 : CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACA : 1699855 175 : sGlnAlaLeuIleSerTyrCysArgLysValGluGluLeuPheThrLeuIleValL : 193 |||| !! !|||!!!||||||!.!!:!:!!.!.|||:!!||||||:!!||||||| sGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValL 1699856 : TCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTAC : 1699912 194 : euGlyGlnValLeuIlePheSerIleLeuIleCysLeuAspGlyTyrLeuMetLeu : 211 |||||!!.:!!|||:!!||||||:!!||||||||||||! !|||!:!! !:!!||| euGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeu 1699913 : TCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTC : 1699966 212 : LeuValSerVal : 215 :!!! !!:!:!! ValGluAsnIle 1699967 : GTAGAAAACATC : 1699980 vulgar: Lalb_14725 99 215 . KQ414915.1 1699632 1699980 + 293 M 116 348 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699633 1699980 293 + . gene_id 3 ; sequence Lalb_14725 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1699633 1699980 . + . KQ414915.1 exonerate:protein2genome:local exon 1699633 1699980 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699633 1699980 293 + . alignment_id 3 ; Query Lalb_14725 ; Align 1699633 100 348 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14725 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 268 Query range: 95 -> 214 Target range: 1711870 -> 1712233 96 : ThrPheIlePheGlnThrSerCysMetIleMetTyrGlyIleGlyTyrLeuCysVa : 114 ||| .!! |||..!! !! ! ! !... !|||:!:.!!||| !||| ! ThrThrPheAlaGlnValLeuSerAlaTyrGlnIleGlyValSerTyrGlyCysPh 1711871 : ACAACATTTGCACAGGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGGTTGCTT : 1711925 115 : lAspAsnPheLeuCysIleThrAsnLeuGlnAlaAlaThrGlnPheArgIleLeuG : 133 !|||||| !!|||||||||! !||||||!!. !|||||||||||||||||||||| eAspAsnValLeuCysIleMetAsnLeuHisLeuAlaThrGlnPheArgIleLeuG 1711926 : CGACAACGTTCTATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAATACTGC : 1711982 134 : lnTyrArgIleAlaAsnIleArg<-><->LysAspAsnAspThrLysGluHisSer : 149 ||:!!|||:!:!.!||||||!.! |||..!!!..!.||| !||| ! .!! lnHisArgLeuValAsnIleAsnGlyLeuLysSerLysGlnThrProGluLysGly 1711983 : AACATAGACTGGTGAATATAAACGGTCTGAAGAGCAAACAGACACCGGAGAAAGGT : 1712036 150 : GlyIleSerArgSerLeuProAlaTyrHisAlaAspHisCysTyrAlaValPheLy : 168 ! !! |||! !! ! ! !!.!! ! !||||||:!!! !|||! !|||||||| GluThrSerIleIleAspSerThrGluPheAlaAspAsnSerTyrAspValPheLy 1712037 : GAAACGTCGATTATAGATTCGACAGAATTTGCGGATAACTCTTACGACGTTTTCAA : 1712093 169 : sAspCysIleLysGlnHisGlnAlaLeuIleSerTyrCysArgLysValGluGluL : 187 | |||:!!:::|||||||||:!!|||!!::!!!:!|||...|||:::||||||: sArgCysValArgGlnHisGlnSerLeuMetAlaPheCysGluLysLeuGluGluM 1712094 : AAGATGCGTTCGTCAACATCAATCTCTGATGGCTTTCTgcgagaaactcgaagaaa : 1712150 188 : euPheThrLeuIleValLeuGlyGlnValLeuIlePheSerIleLeuIleCysLeu : 205 ::|||!:!:!!|||:!!|||||||||:!!|||:!:|||||||||!!!!!:|||||| etPheSerMetIleIleLeuGlyGlnLeuLeuValPheSerIlePheMetCysLeu 1712151 : tgTTCAGTATGATTATACTGGGGCAATTGTTAGTGTTCAGTATTTTTATGTGTCTC : 1712204 206 : AspGlyTyrLeuMetLeuLeuValSer : 214 |||! !! !! !:!:|||||||||||| AspValCysGlnValLeuLeuValSer 1712205 : GACGTGTGCCAAGTACTTCTGGTTAGT : 1712233 vulgar: Lalb_14725 95 214 . KQ414915.1 1711870 1712233 + 268 M 45 135 G 0 6 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711871 1712233 268 + . gene_id 4 ; sequence Lalb_14725 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1711871 1712233 . + . KQ414915.1 exonerate:protein2genome:local exon 1711871 1712233 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711871 1712233 268 + . alignment_id 4 ; Query Lalb_14725 ; Align 1711871 96 135 ; Align 1712012 141 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14725 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 245 Query range: 96 -> 217 Target range: 1694854 -> 1695217 97 : PheIlePheGlnThrSerCysMetIleMetTyrGlyIleGlyTyrLeuCysValAs : 115 .!..!!.!.|||||| !|||:!! ! !|||||| !!|||:!!||| !!|| LeuPheLeuGlnThrLeuCysValTyrHisValGlyIleCysTyrMetCysPheAs 1694855 : CTATTTCTGCAGACACTTTGCGTGTACCATGTCGGTATATGTTACATGTGCTTCGA : 1694909 116 : pAsnPheLeuCysIleThrAsnLeuGlnAlaAlaThrGlnPheArgIleLeuGlnT : 134 ||||.!!||| !!:!! !||||||!!.!.!||||||||||||||||||||||||| pAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGlnPheArgIleLeuGlnT 1694910 : CAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAATTTCGTATCCTTCAAT : 1694966 135 : yrArgIleAlaAsnIleArgLysAspAsnAspThrLysGluHisSerGlyIleSer : 152 |||||.!! !|||:!:!!!!!.! ! !!!:! !:!! ! !!.!! yrArgPheMetAsnLeuSerAsnValIleGluLysGlnThrAspGlyArgGluLeu 1694967 : ACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAACAGACGGTcgagaattg : 1695020 153 : ArgSerLeuProAlaTyrHisAlaAspHisCysTyrAlaValPheLysAspCysIl : 171 ... !.!! !! !.!!! ! !! !!||| ! !!!.|||..!|||:! GluIleGlyTyrThrAsnPheThrValAspSerTyrLeuGlnLeuLysSerCysVa 1695021 : gaaattggtTACACAAATTTCACAGTCGATAGTTACTTACAATTGAAGAGTTGCGT : 1695077 172 : eLysGlnHisGlnAlaLeuIleSerTyrCysArgLysValGluGluLeuPheThrL : 190 ::!! ! ||||||||||||! !.!!||||||!:!|||:!!|||.!.:!!|||:!!| lGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeuGluAsnIlePheSerL 1695078 : GCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTGGAGAACATATTTTCGT : 1695134 191 : euIleValLeuGlyGlnValLeuIlePheSerIleLeuIleCysLeuAspGlyTyr : 208 ||:!!||||||||||||||||||.!!.!.:!!!!::!!:!!||||||! |||||| euLeuValLeuGlyGlnValLeuPheLeuAlaMetValLeuCysLeuValGlyTyr 1695135 : TGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTACTTTGCCTCGTGGGATAT : 1695188 209 : LeuMetLeuLeuValSerValArgLys : 217 ! !:!:!!!|||||||||:!!..!::: GlnLeuPheLeuValSerLeuGluArg 1695189 : CAGCTATTTCTGGTAAGTTTGGAACGT : 1695217 vulgar: Lalb_14725 96 217 . KQ414915.1 1694854 1695217 + 245 M 121 363 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694855 1695217 245 + . gene_id 5 ; sequence Lalb_14725 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1694855 1695217 . + . KQ414915.1 exonerate:protein2genome:local exon 1694855 1695217 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694855 1695217 245 + . alignment_id 5 ; Query Lalb_14725 ; Align 1694855 97 363 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14725 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 96 -> 149 Target range: 1681938 -> 1682097 97 : PheIlePheGlnThrSerCysMetIleMetTyrGlyIleGlyTyrLeuCysValAs : 115 ||| !!!.||||||! !! !:!!:!: ! |||||| !!!:!! !||| !!|| PheThrLeuGlnThrLeuSerValValHisSerGlyIleCysPheCysCysPheAs 1681939 : ttcaCTTTGCAGACATTATCTGTGGTGCATTCGGGAATTTGTTTCTGTTGTTTCGA : 1681993 116 : pAsnPheLeuCysIleThrAsnLeuGlnAlaAlaThrGlnPheArgIleLeuGlnT : 134 |||||||||||||||| !!:!:!!!!.!.!!.! !||||||!:!||||||||| pAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLysIleLeuGlnA 1681994 : CAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAGATTTTACAAA : 1682050 135 : yrArgIleAlaAsnIleArgLysAspAsnAspThrLysGluHisSer : 149 !!!:!:!! !!..:!! !!..!!:!!....:::|||||| ||| snLysLeuGlnThrValLeuSerGluLysSerSerLysGluLysSer 1682051 : ACAAACTCCAAACAGTATTGAGTGAGAAatcttcgaaagaaaaatca : 1682097 vulgar: Lalb_14725 96 149 . KQ414915.1 1681938 1682097 + 108 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681939 1682097 108 + . gene_id 6 ; sequence Lalb_14725 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1681939 1682097 . + . KQ414915.1 exonerate:protein2genome:local exon 1681939 1682097 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681939 1682097 108 + . alignment_id 6 ; Query Lalb_14725 ; Align 1681939 97 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14725 [mRNA] [translate_table: standard] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 166 -> 214 Target range: 1677752 -> 1677896 167 : PheLysAspCysIleLysGlnHisGlnAlaLeuIleSerTyrCysArgLysValGl : 185 |||::: |||:!::::!:!||| ! !||||||..!||| ..!::::::.. PheGluLysCysLeuArgArgHisTyrLeuLeuIleAspTyrValGluGluLeuAs 1677753 : ttcgagaaatgcTTGCGTCGACACTATTTGCTCATTGACTACGTAGAGgaattgaa : 1677807 186 : uGluLeuPheThrLeuIleValLeuGlyGlnValLeuIlePheSerIleLeuIleC : 204 ....||||||! !! !! !:!!||| !|||:!!:!!! !! |||:!:||||||| nAsnLeuPheLysTyrThrLeuLeuLeuGlnMetMetThrSerSerLeuLeuIleC 1677808 : taatttgttCAAATACACCCTTCTGTTACAGATGATGACCTCGAGTTTGTTAATCT : 1677864 205 : ysLeuAspGlyTyrLeuMetLeuLeuValSer : 214 ||:!!..!|||||| ! |||:!!|||||| ysMetSerGlyTyrGluCysLeuValValSer 1677865 : GTATGTCTGGTTACGAATGTTTAGTGGTGAGT : 1677896 vulgar: Lalb_14725 166 214 . KQ414915.1 1677752 1677896 + 102 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1677753 1677896 102 + . gene_id 7 ; sequence Lalb_14725 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1677753 1677896 . + . KQ414915.1 exonerate:protein2genome:local exon 1677753 1677896 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1677753 1677896 102 + . alignment_id 7 ; Query Lalb_14725 ; Align 1677753 167 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14720 [mRNA] [translate_table: standard] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 268 -> 370 Target range: 807266 -> 807578 269 : PheGlnIleThrSerMetMetGluAspMetGlyArgLeuMetLysTyrSerThrPheL : 288 |||! !:!!.!! !! ! !:!!|||! ! ! ! !:!!!:! !! !..!.!.: PheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuM 807267 : TTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGA : 807324 289 : euAsnSerAlaIleLeuGluLeuPheMetPheSerPheSerGlyAspGlyLeuIleGl : 307 !! !!! !:!::!!:!!|||!:!:!:!:!:!!!:!:!!|||:!! !||| .. etValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSe 807325 : TGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTC : 807381 308 : uGluSerGluAsnValGlyLeuSerAlaTyrSerCysGluTrpIleLys<-><->Ser : 324 !..!!!!|||.!.:!!!.!! !:!!||||||..!! ! ||| !::: .!! rArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGly 807382 : GCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGG : 807438 325 : HisTyrCysProAsnLeuMetIleMetMetMetArgSerMetValProSerGlnIleT : 344 ||| ..! !:!!|||:!::!:!!:!!: |||.!!! !|||! !!::|||| HisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleT 807439 : CACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAA : 807498 345 : hrAlaAlaLysPheTyrSerMetSerLeuGlnSerPheSerThrValLeuSerThrSe : 363 |||||!.!|||||| ! !!|||!:!||| !!!|||!.! !:!!|||!.!.!!|| hrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSe 807499 : CAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTC : 807555 364 : rPheSerTyrPheThrValLeu : 370 | !||||||.!.:!!|||:!! rGlySerTyrLeuSerValMet 807556 : TGGCTCGTATCTGTCTGTAATG : 807578 vulgar: Lalb_14720 268 370 . KQ414940.1 807266 807578 + 113 M 55 165 G 0 6 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807267 807578 113 + . gene_id 1 ; sequence Lalb_14720 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807267 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807267 807578 . + . insertions 6 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807267 807578 113 + . alignment_id 1 ; Query Lalb_14720 ; Align 807267 269 165 ; Align 807438 324 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: Lalb_14718 [mRNA] [translate_table: standard] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 235 -> 341 Target range: 807263 -> 807581 236 : LeuLeuMetThrSerGluSerSerGlyGlyAspValAsnThrIleHisPheIleIleT : 255 :!!!!!:!!..!:!! !|||!!! !! !:!!||| .!!:!:... !.!!:!! ValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValL 807264 : GTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTC : 807321 256 : yrSerCysAlaValValLeuLeuAlaPheCysTyrCysPheLeuGlyGluCysLeuIl : 274 ! ! .!!:!!:!!:!!! ! !!:! !|||..!!:! !|||.!. ||| euMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGl 807322 : TGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGA : 807378 275 : eAlaGluSerSerAspMetGlnLeuAlaCysTyrPheThrAsnTrpTyrGluLeuPro : 293 :!!..!!!!..!!!:!!: !! !|||..!||| !:!! !||||||...! !! ! uSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHis 807379 : GTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCAC : 807435 294 : AsnGluTyrAlaLysAlaLeuMetPheCysIleAlaArgSerGlnLysProSerHisL : 313 ....!. |||!:!! !|||:!:!!. !||| !|||.!!.!...!|||! !!.!: GlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgI 807436 : GGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTA : 807495 314 : euThrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyValIleMetLysAl : 332 !!||||||||||||||| ! !.!.!:!||| |||||| !! !|||:!!||||| leThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAl 807496 : TAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGC : 807552 333 : aSerMetAlaTyrLeuSerValLeuArg : 341 |||| :!!||||||||||||:!!!:! aSerGlySerTyrLeuSerValMetLys 807553 : TTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: Lalb_14718 235 341 . KQ414940.1 807263 807581 + 140 M 106 318 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807264 807581 140 + . gene_id 1 ; sequence Lalb_14718 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807264 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807264 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807264 807581 140 + . alignment_id 1 ; Query Lalb_14718 ; Align 807264 236 318 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr3 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 343 -> 398 Target range: 4372 -> 4207 344 : LysIleGlyGluAlaSerTyrPheIleAsnTrpTyrAlaLeuProAlaLysAsnMetSerAs : 364 |||:!!||||||!.! !|||.!.! !:!!|||||| !|||||| !!:!!..!!: !:! LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAs 4372 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGA : 4312 365 : nLeuIleMetMetMetValArgSerAsnArgSerSerThrLeuThrAlaGlyLysIlePheA : 385 !||||||:!!!!:!!:..!||||||||| ! ! ! !:!!|||||||||||||||||| pLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLysIlePheH 4311 : TTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaaaatattcc : 4249 386 : spIleSerLeuGlnGlyPheSerAspValCysLysThrSer : 398 :::|||||| ! !|||.!!|||||| !!:!!|||!:! isMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 4248 : atatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 4208 vulgar: CbirOr3 343 398 . LHQN01027980.1 4372 4207 - 130 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4208 4372 130 - . gene_id 1 ; sequence CbirOr3 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4208 4372 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4208 4372 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4208 4372 130 - . alignment_id 1 ; Query CbirOr3 ; Align 4373 344 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr2 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 338 -> 393 Target range: 4372 -> 4207 339 : LysValGlyGluSerSerTyrPheIleGluTrpTyrAsnLeuProThrAsnIleValGlyTy : 359 |||||||||||| ! !|||.!.! !!!:|||||| !!|||||| !!..! !:!! ! ! LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAs 4372 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGA : 4312 360 : rLeuIleLeuMetIleIleArgSerGlyArgProSerThrLeuThrAlaAlaLysIlePheA : 380 !|||||||||!!:|||! !||||||..! ! ! ! !:!!||||||...||||||||| pLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLysIlePheH 4311 : TTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaaaatattcc : 4249 381 : spLeuSerLeuGlnGlyPheCysGluValCysLysThrSer : 393 :::|||||| ! !||| !!!!:||| !!:!!|||!:! isMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 4248 : atatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 4208 vulgar: CbirOr2 338 393 . LHQN01027980.1 4372 4207 - 107 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4208 4372 107 - . gene_id 1 ; sequence CbirOr2 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4208 4372 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4208 4372 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4208 4372 107 - . alignment_id 1 ; Query CbirOr2 ; Align 4373 339 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 320 -> 394 Target range: 204721 -> 204943 321 : IleThrPheAsnIleTyrIlePheCysTyrIleGlyGluGlnLeuValAspArgAlaG : 340 ::: ||| :::||| !!!. ...... ...||| ! !:!:!!: LeuPhePheProLeuTyrTyrLeuSerSerPheSerIleSerLeuSerIleLysSerG 204722 : cttttctttcctctatACTACTTgtcttcattttcaatttctttgtCGATAAAGTCCG : 204779 341 : lnLysIleGlyThrThrCysTyrMetIleGluTrpTyrGlnLeuProAsnAspLysAl : 359 !!:!!:!! !..!.!!...||| !||||||! .!.||| !::::!!||||| luGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsnLysAl 204780 : AAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAACAAGGC : 204836 360 : aArgSerMetIlePheProIleIleMetSerSerTyrProIleGluLeuThrAlaGly : 378 |!:!|||:!!|||!!. !!!: !! !:!!..! |||:!! |||||||||||| aLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuThrAlaGly 204837 : GAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGcagga : 204893 379 : LysMetLeuLysMetThrMetSerSerPheSerAsnIleLeuLysIle : 394 |||:::... ||||||||| !!!!|||!!!|||:!! !:!!:!! LysLeuPheProMetThrMetLeuThrPheCysAsnValThrGlnLeu 204894 : aaattatttcctatGACGATGCTAACGTTTTGCAACGTCACTCAGCTA : 204943 vulgar: CbirOr4 320 394 . KQ414617.1 204721 204943 + 111 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204722 204943 111 + . gene_id 1 ; sequence CbirOr4 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204722 204943 . + . KQ414617.1 exonerate:protein2genome:local exon 204722 204943 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204722 204943 111 + . alignment_id 1 ; Query CbirOr4 ; Align 204722 321 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 59 -> 242 Target range: 203645 -> 204197 60 : ValSerThrLeuIleAlaThrPheLeuMetLeuPheThrIleValProTrpIleValG : 79 :!!..!!.!||| ! !|||.!!! !:!! !.!.|||:!::!! !!::|||||| IleAspAsnLeuSerTyrThrIleProLeuThrIleThrLeuMetLysTyrIleValI 203646 : ATAGATAATCTTTCATATACTATTCCTTTGACAATAACACTGATGAAGTATATCGTTA : 203703 80 : lnIleIleLysGluLysTrpSerValIleGlnMetLeuArgThrIleCysProLeuLe : 98 !:!:! !|||:::::: ...::: ::: !! !||| !!!:! ! ! !!! leLeuSerLysLysGluGlyLysIleSerArg***SerArgGlyMetTyrSerAsnPh 203704 : TATTGAGTAAAAaggaaggtaagatttcgcgTTAGTCGCGAGGTATGTATAGCAACTT : 203760 99 : uPheThrLeuThrValPheAlaArgTyrIleLeuLeuMetLeuHisGlnAsnGlnLeu : 117 ! ! :!!! !..! !! !! !|||:!!! !:!! ! ! !! ! ||| eValSer***ValHisSerPheIleTyrValHisIleAlaSerPheLeu***ValLeu 203761 : TGTATCATAAGTACATTCATTTATCTATGTACATATCGCTTCTTTCCTTTAAGTTCTC : 203817 118 : LysSerCysMetAspArgValAlaAspAspTrpArgTyrThrIleIleAlaGluAspA : 137 ! !! !:!::!!! !:!!|||!!:|||||| ! ! !! !! ! ! !!:| LeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspPheGluA 203818 : TTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATTTCGAAA : 203877 138 : rgGluThrMetLeuAlaAsnAlaArgMetGlyArgThrPheGlyIleValSerValVa : 156 ||!!:..!|||:!! !....!!|||!!: !|||.!! !.!!|||:!!||| !!. rgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSerTyrAl 203878 : GAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAGTTATGC : 203934 157 : lPheMetPheSerSerGlyAlaLeuPhePheSerLeuProLeu<-><->ValLeuPro : 173 !!!.!!:|||!!!:!!! ! !!!!.!..!. !|||||| ! :!! ! !! aLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIleThrThr 203935 : GTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATTACCACT : 203991 174 : SerLeuIleAsnGluAspAsnValThrValArgLeuHisProSerProCysGluLeuL : 193 !!!! !:!!!...!.!!:!.! !! ! !!:!||| !||| !||| ArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValPro---ThrTyrT 203992 : AGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCa---acttatt : 204048 194 : euValPheAspSerLysIleThrProValTyrGluIleValTyrLeuLeuGlnThrLe : 212 ::::::||| ... !|||||| !!:!||||||:!!!:!|||||||||! ! yrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAl 204049 : atatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGC : 204105 213 : uSerGlyCysThrIleTyrSerAlaPheCysGlyIleCysSerLeuMetAlaAsnPhe : 231 !!!! ! !!!: !..!!:! !|||:!! !!:!!!!.!.!.!! !!. aThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeu 204106 : CACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTG : 204162 232 : ValValHisValCysGlyGlnCysAspValLeu : 242 :!!:!!|||:!!|||||||||! !!: !||| IleLeuHisIleCysGlyGlnLeuGluAsnLeu 204163 : ATCCTTCATATTTGCGGCCAATTGGAAAATCTT : 204197 vulgar: CbirOr5 59 242 . KQ414617.1 203645 204197 + 106 M 111 333 G 0 6 M 19 57 G 1 0 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203646 204197 106 + . gene_id 1 ; sequence CbirOr5 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203646 204197 . + . KQ414617.1 exonerate:protein2genome:local exon 203646 204197 . + . insertions 6 ; deletions 1 KQ414617.1 exonerate:protein2genome:local similarity 203646 204197 106 + . alignment_id 1 ; Query CbirOr5 ; Align 203646 60 333 ; Align 203985 171 57 ; Align 204042 191 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr6 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 107 -> 227 Target range: 203837 -> 204197 108 : IleLysGluAspTrpAlaValMetIleValAspAspAlaArgGluValMetMetIleL : 127 ||| !|||||||||||| !:!!! !..!||| !! !|||!!:||||||!!: !: IleAlaGluAspTrpAlaLysLeuLysThrAspPheGluArgAspValMetIleGlnA 203838 : ATCGCGGAAGATTGGGCAAAGTTGAAAACGGATTTCGAAAGAGACGTGATGATACAAC : 203895 128 : ysAlaThrThrGlyArgArgLeuPheIleLeuCysCysThrPheMetTyrCysAlaGl : 146 :!.!! !! ! !||| ! ! !|||||| !!! !.!!!!.!!:!:! !|||! rgThrArgIleThrArgAlaThrSerIleLeuSerTyrAlaLeuIlePheThrAlaVa 203896 : GAACACGAATTACCCGAGCAACCAGTATACTGAGTTATGCGTTAATATTTACTGCAGT : 203952 147 : yIleSerTyrAsnThrIleValProLeuSerArgGlySerValIleThrAspGluAsn : 165 !!!:! ! ! ..!:!! ! ! !.!!! ! !!!! ! !..! .!..!. lMetPheMetIleValLeuProArgThrGlyIleThrThrArgTyrValThrAsnGlu 203953 : AATGTTCATGATAGTCCTACCAAGAACCGGTATTACCACTAGATACGTAACAAACGAA : 204009 166 : ValThrIleArgProLeuSerCysProGlyTyrTyrValPhePheAspProGlnAsnS : 185 ..!!.!|||!:! !|||! ! ! ||| ...:::||| ....!.! ThrAsnIleLysLysLeuPheProValProThrTyrTyrIleTyrAspIleSerGluT 204010 : ACCAACATAAAAAAGCTTTTTCCGGTGCCaacttattatatttacgatataTCTGAAA : 204069 186 : erProAlaTyrGluIleValPheLeuLeuGlnCysLeuCysGlyValValMetTyrTh : 204 !!||| !!:!||||||:!!|||||||||||| ! ! !|||:!!||| hrProTyrPheGluIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLe 204070 : CTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACT : 204126 205 : rIleThrValThrIleCysGlyLeuAlaAlaLeuPheValMetHisAlaGlyAlaGln : 223 ! ! !:!! !:!! !..!!!! !!.!:!!!!.:!!:!:||| ! !!!.!||| uCysTyrIleGlyValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGln 204127 : TTGTTACATTGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAA : 204183 224 : MetGluIleLeu : 227 :!!|||! !||| LeuGluAsnLeu 204184 : TTGGAAAATCTT : 204197 vulgar: CbirOr6 107 227 . KQ414617.1 203837 204197 + 101 M 120 360 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203838 204197 101 + . gene_id 1 ; sequence CbirOr6 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203838 204197 . + . KQ414617.1 exonerate:protein2genome:local exon 203838 204197 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203838 204197 101 + . alignment_id 1 ; Query CbirOr6 ; Align 203838 108 360 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 332 -> 391 Target range: 3178740 -> 3178917 333 : GluGlnCysLysThrValGlyGluLysAlaTyrMetThrAspTrpTyrLysLeuPr : 351 ...||| !!:!!! !||||||||| !||| !! !|||||| !||||| SerGlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuPr 3178741 : TCCCAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCC : 3178795 352 : oHisLysThrAlaArgGlyLeuLeuLeuIleIleAlaArgSerSerAsnValIleL : 370 | ! ! ! ! !!:!! !||||||||||||!!:|||||||||!.!... !:!!| oThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValL 3178796 : CACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTA : 3178852 371 : ysIleThrAlaGlyLysLeuPheGlnLeuSerIleAlaThrPheGlyAspValIle : 388 ||!!:|||::!||| ! :!! !! |||||| !! !:!!||| !..!|||! ! ysMetThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerValSer 3178853 : AAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTTAGT : 3178906 389 : LysThrSer : 391 !:!! !||| ArgIleSer 3178907 : AGAATTTCC : 3178917 vulgar: CbirOr23 332 391 . KQ414646.1 3178740 3178917 + 105 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178741 3178917 105 + . gene_id 1 ; sequence CbirOr23 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178741 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178741 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178741 3178917 105 + . alignment_id 1 ; Query CbirOr23 ; Align 3178741 333 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr7 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 336 -> 398 Target range: 1395329 -> 1395515 337 : LysValAlaLeuMetSerTyrGluLeuGluTrpTyrArgLeuProAspArgLysAl : 355 ..!:!!::! ! :!!|||...! ! ||||||! !||| ! !!:! ! SerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGlnAspAr 1395330 : TCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCAAGACAG : 1395384 356 : aArgGlnLeuLeuLeuValMetIleMetSerAsnLysProMetThrIleThrAlaG : 374 !!.! :!!:!!|||:!!||||||! |||.!.!:!! !:!:||||||||||||| gHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleThrAlaG 1395385 : ACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCACCGCTG : 1395441 375 : lyAsnPheLeuAspLeuSerLeuLysThrPheCysAspIleMetLysThrSerPhe : 392 ||!!.|||:!!||||||||||||:!! !|||...:!!:!!! ! !! !! ! lyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnValSerLeuLeuPheSer 1395442 : GAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTAAGTCTACTTTTTTCT : 1395495 393 : AlaTyrLeuAsnMetLeu : 398 ! !:!!:!!|||||| TyrValMetHisMetLeu 1395496 : TATGTTATGCATATGCTA : 1395515 vulgar: CbirOr7 336 398 . KQ414716.1 1395329 1395515 + 102 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395330 1395515 102 + . gene_id 1 ; sequence CbirOr7 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395330 1395515 . + . KQ414716.1 exonerate:protein2genome:local exon 1395330 1395515 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395330 1395515 102 + . alignment_id 1 ; Query CbirOr7 ; Align 1395330 337 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 327 -> 395 Target range: 1409031 -> 1409235 328 : GluIleLeuThrGlnGlnCysLysAsnIleGlyGluThrAlaTyrMetThrAspTr : 346 .!.|||:!! ! ||| ||| ||||||:!:||||||||| ! !|| AsnIleIleAspPheGlnSerLysLeuIleGlyAspThrAlaTyrGluPheLeuTr 1409032 : AATATCATTGATTTTcagagtaaactgattggagACACGGCGTATGAATTTCTTTG : 1409086 347 : pTyrTyrLeuProHisLysThrAlaArgAsnLeuIleLeuIleIleSerArgSerA : 365 |||| !!:!!! ! ||| !::!||| !:!!:!:|||:!!||| !||||||. pTyrAsnMetHisSerLysGluSerArgLeuMetLeuLeuValIleLeuArgSerG 1409087 : GTATAATATGCATTCGAAGGAAAGCCGACTTATGTTGCTTGTAATACTACGATCAC : 1409143 366 : snValValIleLysIleThrAlaGlyLysLeuValGlnLeuSerIleAlaThrPhe : 383 !. !! !.!!! ...||| ||||||.........||||||!!:! !!:!||| lnLysGlyPheThrPheThrPheGlyLysPheAlaSerLeuSerMetGluSerPhe 1409144 : AGAAAGGATTTACtttcacttttggaaaatttgcaagtCTTTCCATGGAAAGTTTT : 1409197 384 : SerAspValMetLysThrSerLeuValTyrLeuAsn : 395 :!!! !|||! !! !! !!!!|||!:: ||| AlaGlyValSer***LeuTyrPheValPheAlaAsn 1409198 : GCAGGCGTAAGTTAATTATACTTTGTATTcgctaat : 1409235 vulgar: CbirOr21 327 395 . KQ414716.1 1409031 1409235 + 103 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1409032 1409235 103 + . gene_id 1 ; sequence CbirOr21 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1409032 1409235 . + . KQ414716.1 exonerate:protein2genome:local exon 1409032 1409235 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1409032 1409235 103 + . alignment_id 1 ; Query CbirOr21 ; Align 1409032 328 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 343 -> 400 Target range: 1345597 -> 1345846 344 : GluTrpTyrArgLeuSerAspLeuLysAlaArgGlnMetValLeuLeuMetIleMe : 362 .!.|||||| !||| !!||| ! ! .!!|||..!:!::!!!!!! !!!: ! AsnTrpTyrAspLeuProAspLysTyrThrArgSerLeuIlePheCysIleAlaAr 1345598 : AATTGGTACGATTTACCAGATAAATACACGCGATCGTTAATATTTTGCATCGCTCG : 1345652 363 : tSerAsnLysProIleLysIleThrAlaGlyLysValLeuAspLeuSerLeuLysT : 381 |||.!.|||||| ! :!!|||||||||||| !!! !! !!!||||||:!!| gSerGlnLysProSerTyrLeuThrAlaGlyLysPheTyrValPheSerLeuGluT 1345653 : CTCTCAAAAGCCGTCGTACCTAACAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAA : 1345709 382 : hrPheGlyAsn >>>> Target Intron 1 >>>> IleIleLysAlaSerL : 390 ||||||||! ! 78 bp |||:!!|||||||||: hrPheGlyIle++ ++IleValLysAlaSerM 1345710 : CATTCGGCATCgt.........................agATAGTAAAAGCGTCGA : 1345814 391 : euAlaTyrLeuAsnMetLeuArgAsnValIle : 400 !!|||||||||::!:!:|||!:!!:!:!!||| etAlaTyrLeuSerValLeuLysSerIleIle 1345815 : TGGCCTATCTTTCCGTTCTGAAAAGCATTATC : 1345846 vulgar: CbirOr8 343 400 . KQ414782.1 1345597 1345846 + 124 M 41 123 5 0 2 I 0 74 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345598 1345846 124 + . gene_id 1 ; sequence CbirOr8 ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345598 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345598 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345846 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345846 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345598 1345846 124 + . alignment_id 1 ; Query CbirOr8 ; Align 1345598 344 123 ; Align 1345799 385 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 324 -> 388 Target range: 39938 -> 40130 325 : TyrIleGlyGluIleLeuThrGlnGlnCysLysAsnIleGlyGluThrAlaTyrMetThr : 344 |||||| :::||| ... !! ...||||||:!!:!!|||||| ! TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 345 : AspTrpTyrTyrLeuProHisLysThrAlaArgAsnLeuIleLeuIleIleSerArgSer : 364 :!!|||||| !!||||||! ||| !||| !:::|||:!!:!!:!:|||!!!|||:!! AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 365 : AsnValValIleLysIleThrAlaGlyLysLeuValGlnLeuSerIleAlaThrPheSer : 384 .!.||| !.!!:!!|||||||||||||||!!! !! !!!|||:!!! ! !|||!:! GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsn 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAAC : 40116 385 : AspValMetLys : 388 ! !|||! ::! AlaValSerArg 40117 : GCTGTGAGTCGA : 40130 vulgar: CbirOr21 324 388 . KQ414804.1 39938 40130 + 112 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40130 112 + . gene_id 1 ; sequence CbirOr21 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39939 40130 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40130 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40130 112 + . alignment_id 1 ; Query CbirOr21 ; Align 39939 325 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr10 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 111 -> 237 Target range: 36590 -> 36959 112 : AspTrpArgAsnValValGluSerAsnAspArgThrSerMetIleAsnAsnValLysIle : 131 |||||| !.!. !:!! !..! |||||| !!!!|||:!:!!.!.!!.!|||||| AspTrpAlaGluProIleProGluValAspArgHisThrMetLeuLysThrAlaLysIle 36591 : GACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACGATGCTGAAGACCGCGAAAATT : 36648 132 : SerArgArgLeuLeuAlaMetCysAlaIlePheValTyrLeuThrGlyValGlyTrpArg : 151 ||||||! !:!!! ! !:!:|||:!!|||.!...!|||:!!! !! !:!!!.!!:: ! SerArgMetIleSerIleValCysSerIleLeuThrTyrValMetValLeuAlaPheLeu 36649 : AGTCGAATGATATCCATAGTCTGTTCTATCCTGACGTATGTCATGGTTTTGGCCTTCTTG : 36708 152 : IleIleIleProLeuSerLysGlyLysIleValThrAlaGluAsnValThrIleArgVal : 171 !:!! ! !! !|||!.. !:!!! !..!:!!! ! |||||| ! !! !:!! SerLeuGlnIleTrpSerSerMetGlnAsnThrSerGluPheAsnValGlyGlyLeuLeu 36709 : TCACTTCAAATTTGGAGCAGCATGCAAAACACCTCGGAGTTCAACGTAGGAGGACTACTT : 36768 172 : LeuProCysLeuAlaTyrPheValValPheAspValGlnArgSerProAlaTyrGluIle : 191 :!!|||..! ! !! !!:!|||..!.!.!:!|||||| !||||||||| IleProAlaThr---------PheProTyrAspThrAsnLysSerProAsnTyrGluIle 36769 : ATCCCGGCCACA---------TTTCCATACGACACGAATAAAAGTCCTAATTACGAAATT : 36819 192 : IlePheValValGlnPhePheSerGlyPheMetLysTyrThrIleThrValAlaIlePhe : 211 ! !!:::!!! !|||||| ! .!! ! ! :!!!.. ! ! ! ! !..!.!! ! ThrTrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSerCysPheAsp 36820 : ACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGAT : 36879 212 : GlyPheValThrLeuCysGlyMetHisIleCysAlaGlnLeuAsnIleLeuAlaThrLeu : 231 !||||||.!!:!! !! !:!:|||||||||!.!||||||!.!:!!||| !! ! ! ThrPheValAlaValLeuValLeuHisIleCysGlyGlnLeuThrValLeuArgIleAla 36880 : ACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACTGTTCTCCGCATTGCC : 36939 232 : MetAsnAsnPheValAsn : 237 :!:.!.|||.!!!.!||| LeuGluAsnLeuAlaAsn 36940 : CTCGAGAATCTTGCTAAC : 36959 vulgar: CbirOr10 111 237 . KQ414804.1 36590 36959 + 114 M 64 192 G 3 0 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36591 36959 114 + . gene_id 1 ; sequence CbirOr10 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36591 36959 . + . KQ414804.1 exonerate:protein2genome:local exon 36591 36959 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 36591 36959 114 + . alignment_id 1 ; Query CbirOr10 ; Align 36591 112 192 ; Align 36783 179 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 120 -> 247 Target range: 36572 -> 36947 121 : MetAspArgValAlaAspAspTrpArgTyrThrIleIleAlaGluAspArgGluThrMet : 140 |||..!!:!:!! !||||||||| ! ! !!||| ! !! !||||||.!.|||||| MetSerGlnIlePheAspAspTrpAlaGluProIleProGluValAspArgHisThrMet 36573 : ATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACGATG : 36630 141 : LeuAlaAsnAlaArgMetGlyArgThrPheGlyIleValSerValValPheMetPheSer : 160 ||| !!.!|||!:!!!:.!!|||! !.!...!||||||!!! !:!!.!.! !!:! ! LeuLysThrAlaLysIleSerArgMetIleSerIleValCysSerIleLeuThrTyrVal 36631 : CTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTCTGTTCTATCCTGACGTATGTC : 36690 161 : SerGlyAlaLeuPhePheSerLeuProLeuValLeuProSerLeuIleAsnGluAspAsn : 180 ! !! ! ! !|||!!.||||||! ! :!!! ! !|||:!! !||| ....!. MetValLeuAlaPheLeuSerLeuGln---IleTrpSerSerMetGlnAsnThrSerGlu 36691 : ATGGTTTTGGCCTTCTTGTCACTTCAA---ATTTGGAGCAGCATGCAAAACACCTCGGAG : 36747 181 : ValThrValArgLeuHisProSerProCysGluLeuLeuValPheAspSerLysIleThr : 200 !!!.!||| !! !! ! !! !|||..! !!!! !!:!|||!!!!!.! !!:! PheAsnValGlyGlyLeuLeuIleProAla---ThrPheProTyrAspThrAsnLysSer 36748 : TTCAACGTAGGAGGACTACTTATCCCGGCC---ACATTTCCATACGACACGAATAAAAGT : 36804 201 : ProValTyrGluIleValTyrLeuLeuGlnThrLeuSerGlyCysThrIleTyrSerAla : 220 ||| !|||||||||..!!::||| !||| !:!!.!! ! !! ! ! !..! ProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCys 36805 : CCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGT : 36864 221 : PheCysGlyIleCysSerLeuMetAlaAsnPheValValHisValCysGlyGlnCysAsp : 240 !:!! ! !!.!! !!!!!!!:!:||| !.!!|||:!!|||:!!|||||||||! ! TyrSerCysPheAspThrPheValAlaValLeuValLeuHisIleCysGlyGlnLeuThr 36865 : TATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACT : 36924 241 : ValLeuThrLeuIlePheAsp : 247 |||||| !:!! !.!!!!: ValLeuArgIleAlaLeuGlu 36925 : GTTCTCCGCATTGCCCTCGAG : 36947 vulgar: CbirOr5 120 247 . KQ414804.1 36572 36947 + 106 M 49 147 G 1 0 M 20 60 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36573 36947 106 + . gene_id 1 ; sequence CbirOr5 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36573 36947 . + . KQ414804.1 exonerate:protein2genome:local exon 36573 36947 . + . insertions 0 ; deletions 2 KQ414804.1 exonerate:protein2genome:local similarity 36573 36947 106 + . alignment_id 1 ; Query CbirOr5 ; Align 36573 121 147 ; Align 36720 171 60 ; Align 36780 192 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 572 Query range: 5 -> 399 Target range: 217153 -> 219803 6 : HisHisGluAlaAspValLysTyrValValGluGlnSerHisValValLeuArgValL : 25 .!.:::||| ::::::... !:!!:!! !!:!!.! !:!!|||!:! !: GluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProM 217154 : GAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGA : 217211 26 : euGlyIleTrpProSerAspArgGlnProAsnThrIleGluArgIleAlaAsnIlePh : 44 !!|||:!!||||||!:!...||| !!!.!! ! !..!!:!||| ! !!! !.! etGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLe 217212 : TGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACT : 217268 45 : eLeuValIleValCysTyrPhePheLeuHisCysAspMetValProGlyValLeuTyr : 63 .:!! ! !:!!|||||| !!!.:!! !! ! .!.|||||| !! !:!!||| uIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyr 217269 : GATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTAC : 217325 64 : TyrMetPheValAspAspAspValArgGluLysAlaLysMetMetProProIleMetT : 83 .!..!!! !! !!!:|||:!! !!!:||| !|||:!!.!. !|||:!:!!:! ValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIleP 217326 : GTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCT : 217385 84 : yrSerValMetAlaIleAlaLysTyrGlyAsnLeuIleIleHisGluArgAspIleAr : 102 :!!!!|||||||||.!!!.!|||||| !::!||||||:!!|||:!! !|||||||| heCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleAr 217386 : TCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCG : 217442 103 : gSerCysLeuArgHisIleLysGluAspTrpAlaValMetIleValAspAspAlaArg : 121 |..!|||:!!|||...|||:!!..!|||||| ! !:!:! ! !!!: ! ! !||| gGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArg 217443 : CGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGG : 217499 122 : GluValMetMetIleLysAlaThrThrGlyArgArgLeuPheIleLeuCysCysThrP : 141 |||!.!|||!!::!:!!.|||!.! !||||||!:!||| !!:!!|||||| ! !| GluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPheP 217500 : GAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCT : 217559 142 : heMetTyrCysAlaGlyIleSerTyrAsnThrIleValProLeuSerArgGlySerVa : 160 |||||||| !!... ::: ||| ! !:!!|||:!!||| !|||!!!:! heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIl 217560 : TCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAAT : 217616 161 : lIleThrAspGlu<->AsnValThrIleArgProLeuSerCysProGlyTyrTyrVal : 178 !:!!:!!!!:.!. |||:!!|||.!!! !|||||| !! !||| ! ! ! eLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyr 217617 : TCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTAT : 217673 179 : PhePheAspProGlnAsnSerProAlaTyrGluIleValPheLeuLeuGlnCysLeuC : 198 .!!.!!||| !!!:: !!!!!|||.!! !!||||||||||||!!!||||||! :!!. IleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleA 217674 : ATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCG : 217733 199 : ysGlyValValMetTyrThrIleThrValThrIleCysGlyLeuAlaAlaLeuPheVa : 217 .!|||!.!:!!|||:!! !|||||| !.!! !|||.!!||||||||| !|||!. laGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAl 217734 : CTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGC : 217790 218 : lMetHisAlaGlyAlaGlnMetGluIleLeuMetArgLeuIleGluSerLeuValAsp : 236 !:!:|||||| !!!.!|||!!:|||:!:||||||!.!! !:!::!! !|||:!!||| aValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAsp 217791 : GGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGAC : 217847 237 : AspCysLysPheGluGlnLysAsnIleAspThrLysLeuAlaIleIleValGluHisG : 256 ! ! ! ! ! !... ! !.!:!:||| !!:!:!!|||! !||||||...!!.! GlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnH 217848 : GGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAAC : 217907 257 : lnIleArgIleArg{As} >>>> Target Intron 1 >>>> {n}PheLeuAr : 264 !.:!!|||||| !{!!} 1229 bp {.}|||||| isValArgIleLeu{Ly}++ ++{s}PheLeuTh 217908 : ACGTTCGGATATTA{AA}gt.........................ag{a}tttttgaC : 219160 265 : gLeuValGluAsnThrLeuCysTyrSerSerPheValGluIleValGlyCysThrThr : 283 !|||..!|||!..|||||| ! ! !||||||!.!|||.!!:!!|||||||||! ! rLeuThrGluArgThrLeuGlnGlnIleSerPheAlaGluPheLeuGlyCysThrMet 219161 : GCTCACAGAGAGAACCCTCCAGCAAATCTCTTTCGCTGAATTTCTAGGATGCACCATG : 219217 284 : IleIleCysLeuValGlyTyrCysIleIleVal >>>> Target Intron 2 >> : 295 !||||||||||||||||||! !||||||||| 76 bp AspIleCysLeuValGlyTyrTyrIleIleVal++ 219218 : GACATATGTCTCGTTGGATATTACATTATCGTGgt....................... : 219255 296 : >> GluTrpGluAspArgAsnValThrAlaLeuCysSerTyrValThrSerLeuIle : 312 ||||||:!!...!.!:!!||||||::! ! !!!|||:!!! ! !|||||| ++GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIle 219256 : ..agGAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATA : 219380 313 : SerValIleIleAsnIlePheIleLeuCysPheIleGlyGluTyrIleThrIleGln : 332 |||:!: ...||||||||||||...|||::!||||||||| !:!!.!! !||| SerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln+ 219381 : TCCCTcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAgg : 219440 333 : >>>> Target Intron 3 >>>> AlaAspGluValSerLeuThrLeuCysThr : 341 160 bp !....!. !|||:!!! !||| .!! + --MetSerAsnSerSerIleLysLeuThrAla 219441 : t.........................ctATGTCGAATTCCTCGATAAAATTGACAGCC : 219627 342 : LeuAsnTrpTyrArgLeuProIleSerThrValArgAsnMetValLeuIleThrAlaA : 361 !||| ! !..!||| !!||||||||| !!! !:!!:!! ::: GlyAsnMetValGluLeuSerIleSerThrPheThrAspValSerIleLysLeuPheL 219628 : GGAAATATGGTCGAATTGTCTATCAGCACTTTTACCGACGTGAGtatcaaattattca : 219687 362 : laSerSerValProProGlnIleThrAlaGlyLysPheIleAspLeuSerPheArgTh : 380 |||:!! !!||| !!! ! !.! ! !!::: ...... ||| ysSerThrPheProSerLeuAlaAsn***ArgGlnAsnSerSerPhePhePheProAr 219688 : aatctaCATTTCCATCTCTGGCGAATTAACGACaaaattcctctttcttttttcctcg : 219744 381 : rPheGlyAspValIleLysSerAlaValIleTyrLeuAsnMetLeuArgGlnPheThr : 399 !! !.!.|||:!!|||!!!||||||! !:!||||||:!:|||||| !!!.||| gArgGluGlnValValLysThrAlaValThrPheLeuAsnValLeuArgThrLeuThr 219745 : tcgTGAACAGGTCGTTAAGACTGCAGTCACGTTTCTGAATGTACTACGAACATTGACT : 219801 vulgar: CbirOr6 5 399 . KQ414889.1 217153 219803 + 572 M 159 477 G 0 3 M 96 288 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 37 111 5 0 2 I 0 156 3 0 2 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217154 219803 572 + . gene_id 1 ; sequence CbirOr6 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217154 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217154 217923 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219599 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219598 219599 . + . intron_id 2 ; splice_site "CT" KQ414889.1 exonerate:protein2genome:local cds 219600 219803 . + . KQ414889.1 exonerate:protein2genome:local exon 219600 219803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217154 219803 572 + . alignment_id 1 ; Query CbirOr6 ; Align 217154 6 477 ; Align 217634 165 288 ; Align 219154 262 99 ; Align 219329 295 111 ; Align 219600 332 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 476 Query range: 7 -> 339 Target range: 284508 -> 287013 8 : GluAlaAspValLysTyrValValGluGlnSerHisValValLeuArgValLeuGlyI : 27 !!:.!!||| !! !||| !|||:!!..!!:!!.! ! !!|||!:! !:!!|||: AspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyV 284509 : GACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCG : 284566 28 : leTrpProSerAspArgGlnProAsnThrIleGluArgIleAlaAsnIlePheLeuVa : 46 !!|||||| !..!! ! !!.!|||:!:|||!:!|||::!::!:!: !!|||!. alTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAl 284567 : TATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGC : 284623 47 : lIleValCysTyrPhePheLeuHisCysAspMetValProGlyValLeuTyrTyrMet : 65 !:!!:!! !!! !|||.!.:!! !! ! !:!!|||||| !!!.!|||! ! :!! aLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrVal 284624 : GTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTG : 284680 66 : Phe<->ValAspAspAspValArgGluLysAlaLysMetMetProProIleMetTyrS : 84 .!! ! !! !|||:!! ! !||| !||||||!!: !|||:!:! !:!! LeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheC 284681 : CTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCT : 284740 85 : erValMetAlaIleAlaLysTyrGlyAsnLeuIleIleHisGluArgAspIleArgSe : 103 !!:!!|||||| !|||||| !! !|||||| !.!! !! ! ||| !!.. ysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGl 284741 : GCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCA : 284797 104 : rCysLeuArgHisIleLysGluAspTrpAlaValMetIle<-><-><->ValAspAsp : 119 !|||:!!!:! !!|||:::! !||||||:!!:!!! !:!! :::::: nCysValLysAspIleArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGlu 284798 : ATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagag : 284854 120 : AlaArgGluValMetMetIleLysAlaThrThrGlyArgArgLeuPheIleLeuCysC : 139 ||||||:::|||! ! !!..|||! !! !|||||| !||| |||!!!|||. GluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysA 284855 : gagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCG : 284914 140 : ysThrPheMetTyrCysAlaGlyIleSerTyrAsnThrIleValProLeuSerArgGl : 158 .! !|||||||||! !!.!|||.!!! !|||!.!|||:!::!!||||||!!!! !! laGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysThrVa 284915 : CCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGT : 284971 159 : ySerValIleThrAspGluAsnValThrIleArgProLeuSerCysProGlyTyrTyr : 177 ! !!..! ! ! !!!:|||! !|||:!:||| !!! !:!!! !||| !||| ! lArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArg 284972 : ACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGC : 285028 178 : ValPhePheAspProGlnAsnSerProAlaTyrGluIleValPheLeuLeuGlnCysL : 197 ! !.!!.!!||||||!::!.!||||||:!!!:!||||||||| !!!:!!||||||| GlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysL 285029 : GGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCT : 285088 198 : euCysGlyValValMetTyrThrIleThrValThrIleCysGlyLeuAlaAlaLeuPh : 216 ||..!!.! !!|||!!:|||:!!:!!|||||| ! !|||.!!|||||||||:!!|| euAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPh 285089 : TGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTT : 285145 217 : eValMetHisAlaGlyAlaGlnMetGluIleLeuMetArgLeuIleGluSerLeuVal : 235 ||||||||||!.! !!!.!|||.!...!||||||:!!! ! !:!:!!:!.!|||||| eValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuVal 285146 : CGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTC : 285202 236 : AspAspCysLysPheGluGln<-><->LysAsnIleAspThrLysLeuAlaIleIleV : 253 |||! ||| ..!:!! !..!.. !!!: !::!|||!.! !|||: AspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleI 285203 : GACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCA : 285262 254 : alGluHisGlnIleArgIleArg{As} >>>> Target Intron 1 >>>> {n : 261 !!||||||!!.:!:!:!|||! !{..} 1411 bp {! leGluHisHisLeuLysIleLeu{Gl}++ ++{y 285263 : TCGAGCATCATCTGAAGATACTG{GG}gt.........................ag{T : 286699 262 : }PheLeuArgLeuValGluAsnThrLeuCysTyrSerSerPheValGluIleValGly : 280 }|||:!! !! !:!!|||... !||| ! ! ! !!!!|||||||||:!::!!||| }PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValIleGly 286700 : }TTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGT : 286754 281 : CysThrThrIleIleCysLeuValGlyTyrCysIleIleVal >>>> Target In : 295 |||||| !! !||||||!!!:!!||||||! !:!!:!:..! 80 b CysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeuThr++ 286755 : TGCACGTTGAACATATGCTTTTTGGGATATTATTTACTGACGgt.............. : 286801 296 : tron 2 >>>> GluTrpGluAspArgAsnValThrAlaLeuCysSerTyrValThr : 309 p |||||||||.!.!!!.!...!! !!.! ! !!!!||| !||| ++GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThr 286802 : ...........agGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACG : 286921 310 : SerLeuIleSerValIleIleAsnIlePheIleLeuCysPheIleGlyGluTyrIleT : 329 ! !|||:!!||| !!! .!!|||:!!||||||||||||!:!||||||||| !:!!: LeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuS 286922 : TTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCT : 286981 330 : hrIleGlnAlaAspGluValSerLeuThrLeu : 339 !! !|||... :::::: |||:!! erGluGlnValPhePheIleThrSerThrIle 286982 : CCGAACaggtatttttcattacttcaACGATC : 287013 vulgar: CbirOr6 7 339 . KQ414889.1 284508 287013 + 476 M 59 177 G 0 3 M 50 150 G 0 9 M 126 378 G 0 6 M 18 54 S 0 2 5 0 2 I 0 1407 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284509 287013 476 + . gene_id 2 ; sequence CbirOr6 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284509 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284509 285287 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286698 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 287013 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 287013 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284509 287013 476 + . alignment_id 2 ; Query CbirOr6 ; Align 284509 8 177 ; Align 284689 67 150 ; Align 284848 117 378 ; Align 285232 243 54 ; Align 286700 262 99 ; Align 286879 295 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 442 Query range: 7 -> 260 Target range: 204221 -> 204977 8 : GluAlaAspValLysTyrValValGluGlnSerHisValValLeuArgValLeuGlyI : 27 |||! !|||:!!!:!|||!.!..!... ! ! !:!!||| !!:!!:!!||| GluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyA 204222 : GAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTG : 204279 28 : leTrpProSerAspArgGlnProAsnThrIleGluArgIleAlaAsnIlePheLeuVa : 46 ||||||! ! !.!. !!::! !!.!! !|||:!!!.!... !.!. ! laTrpProIleProValAsnSerSerProPheThrArgLeuValArgArgIleGluHi 204280 : CGTGGCCGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACA : 204336 47 : lIleValCysTyrPhePheLeuHisCysAspMetValProGlyValLeuTyrTyrMet : 65 !:!!||| !||||||...... !!:|||||||||:!!|||||| .!. sValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPhe 204337 : CGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTC : 204393 66 : PheValAspAspAspValArgGluLysAlaLysMetMetProProIleMetTyrSerV : 85 .!. !!!: ! :!!! !!:! ::: !|||!!::!: !||||||:!! !!!!! LeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysS 204394 : CTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCA : 204453 86 : alMetAlaIleAlaLysTyrGlyAsnLeuIleIleHisGluArgAspIleArgSerCy : 104 !!!: !.!! !||||||..! !:!!:!! !!.. ! ! |||!:!!.! ! erIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSe 204454 : GCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAG : 204510 105 : sLeuArgHisIleLysGluAspTrpAlaValMetIleValAspAspAlaArgGluVal : 123 !|||!.! !|||!:!...|||||| :!! ! !..!|||!!: !||| !:!! rLeuAsnThrIleArgArgAspTrp---IleGluAlaThrAspGluAsnArgLeuIle 204511 : TTTGAACACCATCAGACGCGACTGG---ATAGAGGCTACGGATGAAAATCGGTTGATT : 204564 124 : MetMetIleLysAlaThrThrGlyArgArgLeuPheIleLeuCysCysThrPheMetT : 143 .!. ||||||! !! !|||||||||:!!!!.:!::!!.....!.!! !|||| PheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetT 204565 : TTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGT : 204624 144 : yrCysAlaGlyIleSerTyrAsnThrIleValProLeuSerArgGlySerValIleTh : 162 || !!!.!|||:!:!!!|||!..||||||:!!||||||! !||||||!!!:!!:!!|| yrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleValTh 204625 : ACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTAAC : 204681 163 : rAspGluAsnValThrIleArgProLeuSerCysProGlyTyrTyrValPhePheAsp : 181 | !!!:||||||||||||||||||||| !!||||||! !|||:::|||||||||::: rProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePheAsn 204682 : ACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaac : 204738 182 : ProGlnAsnSerProAlaTyrGluIleValPheLeuLeuGlnCysLeuCysGlyValV : 201 !|||..!|||||| !|||||||||||||||:!!|||||| !:!!..!||| !!| GluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheV 204739 : GAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTG : 204798 202 : alMetTyrThrIleThrValThrIleCysGlyLeuAlaAlaLeuPheValMetHisAl : 220 ||! |||.!!:!!! ! ! !! !||||||:!!..!||||||||||||:!:||||| alThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAl 204799 : TTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGC : 204855 221 : aGlyAlaGlnMetGluIleLeuMetArgLeuIleGluSerLeuValAspAspCysLys : 239 | !!::!..!:!!..!||||||:!!!.! !!!:.!.:!!||||||||| ! ... ! aCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAlaAsp 204856 : GTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCGGAC : 204912 240 : PheGluGlnLysAsnIleAspThrLysLeuAlaIleIleValGluHisGlnIleArgI : 259 .!. :!!! ! !:!: !!! !|||:!!||| !|||||||||:!!|||! !:!| MetThrGluThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrLysI 204913 : ATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGAAGA : 204972 260 : leArg : 260 ||!:! leLys 204973 : TAAAG : 204977 vulgar: CbirOr6 7 260 . KQ414889.1 204221 204977 + 442 M 105 315 G 1 0 M 147 441 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204222 204977 442 + . gene_id 3 ; sequence CbirOr6 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204222 204977 . + . KQ414889.1 exonerate:protein2genome:local exon 204222 204977 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 204222 204977 442 + . alignment_id 3 ; Query CbirOr6 ; Align 204222 8 315 ; Align 204537 114 441 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 425 Query range: 6 -> 266 Target range: 221360 -> 222143 7 : HisGluAlaAspValLysTyrValValGluGlnSerHisValValLeuArgValLeuG : 26 :!!:!!.!!:!!||||||! !|||:!! !|||!.! !:!!|||!:! !:!!| TyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleG 221361 : TACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCG : 221418 27 : lyIleTrpProSerAspArgGlnProAsnThrIleGluArgIleAlaAsnIlePheLe : 45 ||:!!||||||!:!... !.!. !::!|||:!!|||||| ! ! !! .!.:! lyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLeuIl 221419 : GTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCTGAT : 221475 46 : uValIleValCysTyrPhePheLeuHisCysAspMetValProGlyValLeuTyrTyr : 64 ! !:!!||||||||| !.!.:!! ! ! !:!!|||||| !! !|||||| eAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyrVal 221476 : AAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTG : 221532 65 : MetPheValAspAspAspValArgGluLysAlaLysMetMetProProIleMetTyrS : 84 !!:.!!! !! !!:|||||| !.!.!:! !|||:!!:!! !|||:!:! !:!! IleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheC 221533 : ATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCT : 221592 85 : erValMetAlaIleAlaLysTyrGlyAsnLeuIleIleHisGluArgAspIleArgSe : 103 !!|||||||||.!! !|||||| ! ||||||:!!:!!|||!.!|||||||||.. ysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGl 221593 : GCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGA : 221649 104 : rCysLeuArgHisIleLysGluAspTrpAlaValMetIleValAspAspAlaArgGlu : 122 !|||:!!..!!.!|||:!! !|||||| ! !!!:! ! !..! ! ! !!:!!!: uCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLysAsp 221650 : GTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAGGAT : 221706 123 : ValMetMetIleLysAlaThrThrGlyArgArgLeuPheIleLeuCysCysThrPheM : 142 :!!|||!!: !!.|||! ! !||||||||||||.!!!!::!!||| !|||| IleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheM 221707 : ATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCA : 221766 143 : etTyrCysAlaGlyIleSerTyrAsnThrIleValProLeuSerArgGlySerVal<- : 161 ||||| !!... ::: ||| ! !:!!|||!!!||| !|||!.!:!! etTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIlePr 221767 : TGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCC : 221823 162 : >IleThrAspGluAsnValThrIleArgProLeuSerCysProGlyTyrTyrValPhe : 179 !||| |||||||||... |||:!! !! !||| !! !!.!! oAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPheIle 221824 : TGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATC : 221880 180 : PheAspProGlnAsnSerProAlaTyrGluIleValPheLeuLeuGlnCysLeuCysG : 199 !!||| !!!:! !!||||||!.! !!||||||:!!|||! !|||||| !:!!...| ValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaG 221881 : GTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGG : 221940 200 : lyValValMetTyrThrIleThrValThrIleCysGlyLeuAlaAlaLeuPheValMe : 218 ||!.!:!!|||:!!!:!|||||| !.!! !|||.!!|||!.!|||:!!|||!.!:! lyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaVa 221941 : GTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGT : 221997 219 : tHisAlaGlyAlaGlnMetGluIleLeuMetArgLeuIleGluSerLeuValAspAsp : 237 !|||||| !!!.!||||||:!!:!:||||||!!!! !:!::!! !|||:!!:!!! ! lHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsnGly 221998 : GCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGC : 222054 238 : CysLysPheGluGlnLysAsnIleAspThrLysLeuAlaIleIleValGluHisGlnI : 257 ! ! ! ! !!.|||:!:|||! !!:!:!!|||! ||||||.!.!!.!!.: ArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnHisV 222055 : CGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAACACG : 222114 258 : leArgIleArgAsnPheLeuArgLeuVal : 266 !!|||||| !.!.!:!:!!|||! !:!! alArgIleLeuGlnTyrValArgCysIle 222115 : TTCGAATATTGCAGTATGTACGTTGTATC : 222143 vulgar: CbirOr6 6 266 . KQ414889.1 221360 222143 + 425 M 154 462 G 0 3 M 106 318 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221361 222143 425 + . gene_id 4 ; sequence CbirOr6 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221361 222143 . + . KQ414889.1 exonerate:protein2genome:local exon 221361 222143 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221361 222143 425 + . alignment_id 4 ; Query CbirOr6 ; Align 221361 7 462 ; Align 221826 161 318 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 398 Query range: 3 -> 259 Target range: 289708 -> 290476 4 : AsnGluHisHisGluAlaAspValLysTyrValValGluGlnSerHisValValLeuA : 23 |||!!:!.!:!!|||.!!|||:!!:::|||..! !!||| !!!!||| !:!!|||! AsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleLeuL 289709 : AACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCTTGA : 289766 24 : rgValLeuGlyIleTrpPro<->SerAspArgGlnProAsnThrIleGluArgIleAl : 41 :! !:!!|||!!:!::||| ! !!!!!:: !!!:!! ! !||||||! || ysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgThrAl 289767 : AACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGC : 289823 42 : aAsnIlePheLeuValIleValCysTyrPhePheLeuHisCysAspMetValProGly : 60 |::::!:!!.|||:!!:!:||||||! !! .!!|||!!.! ! !!!:|||||| ! aSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValProPhe 289824 : GTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCGTTC : 289880 61 : ValLeuTyrTyrMetPheValAspAspAspValArgGluLysAlaLysMetMetProP : 80 !! !:!! !:!:||| !|||:!!|||:!!!.! ! !.!|||! :!: !| SerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuGlyP 289881 : AGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCGGAC : 289940 81 : roIleMetTyrSerValMetAlaIleAlaLysTyrGlyAsnLeuIleIleHisGluAr : 99 ||:!:! !!:!!!!:!!! .!!.!! !|||||| !! !!!!!! !!!: ! ! roLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGlySe 289941 : CGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGGTTC : 289997 100 : gAspIleArgSerCysLeuArgHisIleLysGluAspTrpAlaValMetIleValAsp : 118 !! ||| !! !!|||:!!!:!||||||:!!..!|||||| !:!!:!! !! !!!: rAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAspGlu 289998 : AGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGACGAG : 290054 119 : AspAlaArgGluValMetMetIleLysAlaThrThrGlyArgArgLeuPheIleLeuC : 138 ||| !|||! :!!|||:!:! ! ! !.!|||! !.!!|||!.!|||.!.! !|||| AspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysLeuC 290055 : GATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAACTGT : 290114 139 : ysCysThrPheMetTyrCysAlaGlyIleSerTyrAsnThrIleValProLeuSerAr : 157 ||...! !|||:!!||| !.!|||:!:||||||||||||:!!:!!||||||! ! ysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPheSe 290115 : GCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTTCTC : 290171 158 : gGlySerValIleThrAspGluAsnValThrIleArgProLeuSerCysProGlyTyr : 176 ! !!.! !:!: :!!! |||||||||||||||||||||!!!! !||||||||| rLysLysSerVal---AsnGlyAsnValThrIleArgProLeuThrTyrProGlyTyr 290172 : GAAGAAGAGCGTG---AACGGTAACGTGACTATCAGACCTCTAACTTATCCCGGTTAC : 290225 177 : TyrValPhePheAspProGlnAsnSerProAlaTyrGluIleValPheLeuLeuGlnC : 196 ! ! !||||||||| !|||!!.||||||||||||||||||||||||! !:!!!!.| GluGluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetHisC 290226 : GAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACT : 290285 197 : ysLeuCysGlyValValMetTyrThrIleThrValThrIleCysGlyLeuAlaAlaLe : 215 ||:!!! !! !:!!:!!! ! !.!||||||:!!.!! ! !.!!|||.!!.!!:! ysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIl 290286 : GTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGAT : 290342 216 : uPheValMetHisAlaGlyAlaGlnMetGluIleLeuMetArgLeuIleGluSerLeu : 234 !|||!.!! |||.!! !!!.!|||!!::!!|||! !! !! !! !:!:|||..!||| ePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAspLeu 290343 : CTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTG : 290399 235 : ValAspAspCysLysPheGluGlnLysAsnIleAspThrLysLeuAlaIleIleValG : 254 ..! ! ! ! !.!. !:!!|||...:!:..! !:::||||||:!!:!!|||. ThrLysArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValValValS 290400 : ACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTGTGA : 290459 255 : luHisGlnIleArgIle : 259 .. !!!.:!:..!||| erGlyHisValGluIle 290460 : GCGGTCACGTGGAGATC : 290476 vulgar: CbirOr6 3 259 . KQ414889.1 289708 290476 + 398 M 26 78 G 0 3 M 132 396 G 1 0 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289709 290476 398 + . gene_id 5 ; sequence CbirOr6 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289709 290476 . + . KQ414889.1 exonerate:protein2genome:local exon 289709 290476 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 289709 290476 398 + . alignment_id 5 ; Query CbirOr6 ; Align 289709 4 78 ; Align 289790 30 396 ; Align 290186 163 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 390 Query range: 3 -> 259 Target range: 208185 -> 208956 4 : AsnGluHisHisGluAlaAspValLysTyrValValGluGlnSerHisValValLeuA : 23 |||..!:!!:!!:!! !|||:!!!..!:! !|||...! !!:! !..!|||! AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 24 : rgValLeuGlyIleTrpProSerAspArgGlnProAsnThrIleGluArgIleAlaAs : 42 :!:!!:!!||| !||||||!!!..!! !.!.! !::! !:!!|||!.!! ! !:! ysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHi 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCA : 208300 43 : nIlePheLeuValIleValCysTyrPhePheLeuHisCysAspMetValProGlyVal : 61 !|||.!!||| !:!!:!! !!:!!! !!!.||| !! ! !:!!:!!||| !! ! sIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGly 208301 : TATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGC : 208357 62 : LeuTyrTyrMetPheValAspAspAspValArgGluLysAlaLysMetMetProProI : 81 :!!!:! !!:.!!|||! !!!:||| !! !!!::!! !|||!!: ! !!: MetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaL 208358 : ATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTC : 208417 82 : leMetTyrSerValMetAlaIleAlaLysTyrGlyAsnLeuIleIleHisGluArgAs : 100 !:! !:!! !:!!||||||.!!.!!||||||! !! !:!!! !:!!!.!||| !!|| euSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAs 208418 : TGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGA : 208474 101 : pIleArgSerCysLeuArgHisIleLysGluAspTrpAlaValMetIleValAspAsp : 119 |||||||!.!|||:!!..!:!!:!!:!!! |||||| ! !:!! !!!:!!: pIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGlu 208475 : CATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAG : 208531 120 : AlaArgGluValMetMetIleLysAlaThrThrGlyArgArgLeuPheIleLeuCysC : 139 ! !|||:!!:!!|||:!! !!!.|||!:! !!.!|||!:!|||.!!:!::!!||| AspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysG 208532 : GACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCG : 208591 140 : ysThrPheMetTyrCysAlaGlyIleSerTyrAsnThrIleValProLeuSerArgGl : 158 ! .!!||||||||| ! !.. ||| ||| ! !:!!||||||!!!|||! lyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAs 208592 : GAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGA : 208648 159 : ySerValIleThrAsp<->GluAsnValThrIleArgProLeuSerCysProGlyTyr : 176 !!.!|||:!! !!!: ! |||:!!||| !||| !||| !! !|||! ! ! pLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValPro 208649 : CAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCT : 208705 177 : TyrValPhePheAspProGlnAsnSerProAlaTyrGluIleValPheLeuLeuGlnC : 196 ! !!.!!.!.||| !!:! !!||||||!.! !!|||||| !!!:! !:!!|||! LysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnL 208706 : AAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAAT : 208765 197 : ysLeuCysGlyValValMetTyrThrIleThrValThrIleCysGlyLeuAlaAlaLe : 215 |||! ||| !!||| :!!!.!||||||||| ! !||||||||||||||||| euLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLe 208766 : TGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCT : 208822 216 : uPheValMetHisAlaGlyAlaGlnMetGluIleLeuMetArgLeuIleGluSerLeu : 234 |.!!!.!||||||||| !!!.!|||:!!:!!||||||||| !! !!!:|||!.!||| uLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeu 208823 : GCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTG : 208879 235 : ValAspAspCysLysPheGluGlnLysAsnIleAspThrLysLeuAlaIleIleValG : 254 ||||||! ! :!! !|||:!!||||||:!:||| !!:!||||||! !||||||| ValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleValG 208880 : GTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCGTGG : 208939 255 : luHisGlnIleArgIle : 259 ||!!.!!.:!!|||:!: luGlnHisValArgVal 208940 : AGCAGCATGTTCGAGTG : 208956 vulgar: CbirOr6 3 259 . KQ414889.1 208185 208956 + 390 M 160 480 G 0 3 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 208956 390 + . gene_id 6 ; sequence CbirOr6 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208186 208956 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208956 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208186 208956 390 + . alignment_id 6 ; Query CbirOr6 ; Align 208186 4 480 ; Align 208669 164 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 390 Query range: 9 -> 331 Target range: 232450 -> 234914 10 : AspValLysTyrValValGluGlnSerHisValValLeuArgValLeuGlyIleTrpP : 29 ||| !:!!||| !:!!:!! !!:!!.! ! !!|||! ! !:!!||| !|||| AspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpP 232451 : GACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGC : 232508 30 : roSerAspArgGlnProAsnThrIleGluArgIleAlaAsnIlePheLeuValIleVa : 48 || !!! !! !:!! !!:::! ! !:!!!:!:!! ! ! !.!.||| !:!!.. roArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuTh 232509 : CGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCAC : 232565 49 : lCysTyrPhePheLeuHisCysAspMetValProGlyValLeuTyrTyrMetPheVal : 67 !|||:!!! !.!.:!! !! !...!!:|||||| !!:!!|||!:! !:!!|||! ! rCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGlu 232566 : CTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAA : 232622 68 : AspAspAspValArgGluLysAlaLysMetMetProProIleMetTyrSerValMetA : 87 ||| ..!:!!..!|||!:! !||| !!: !|||!!:! :!!! !:!!|||! AspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetG 232623 : GACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGG : 232682 88 : laIleAlaLysTyrGlyAsnLeuIleIleHisGluArgAspIleArgSerCysLeuAr : 106 .! ! !!!.||| !! !|||:!: ! ! ! !!.!||||||! !! !|||:!!.. lyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGl 232683 : GTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGA : 232739 107 : gHisIleLysGluAspTrpAlaValMetIleValAspAspAlaArgGluValMetMet : 125 !!!.:!:|||:!!|||||| ! !:!:! ! !! ! !|||!!::!!|||:!! uGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeu 232740 : ACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTG : 232796 126 : IleLysAlaThrThrGlyArgArgLeuPheIleLeuCysCysThrPheMetTyrCysA : 145 ! !!.|||! ! !|||||| !:!! ! !:!!..!... !! !|||:!! !! LysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrG 232797 : AAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCG : 232856 146 : laGlyIleSerTyrAsnThrIleValProLeuSerArgGlySer<->ValIleThrAs : 163 .!! ! !||| !!.!.! !:!!..! !||| !!! !.!!!!! !:!: !:! lyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAs 232857 : GTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAA : 232913 164 : pGluAsnValThrIleArgProLeuSerCysProGlyTyrTyrValPhePheAspPro : 182 !|||!:! !:!!!!: !|||||| !!||| !! !||| !.!..!.||| !! nGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThr 232914 : CGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACC : 232970 183 : GlnAsnSerProAlaTyrGluIleValPheLeuLeuGlnCysLeuCysGlyValValM : 202 ::! !||||||.!! !!||||||:!!|||:!!||||||||||||! !||| !!:!!: ArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleV 232971 : AGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCG : 233030 203 : etTyrThrIleThrValThrIleCysGlyLeuAlaAlaLeuPheValMetHisAlaGl : 221 !! !!:!!:!!|||||| ! !|||||||||!.!|||:!!.!.!.!||||||||| ! alAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCy 233031 : TGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTG : 233087 222 : yAlaGlnMetGluIleLeuMetArgLeuIleGluSerLeuValAspAspCysLysPhe : 240 !!.!|||:!!.!.:!::!!||| ! !:!:!!:..!|||||||||! ! sGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGlyGln 233088 : CGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAG : 233144 241 : GluGlnLysAsnIleAspThrLysLeuAlaIleIleValGluHisGlnIleArgIleA : 260 |||:!!!:! ! .!.! !||||||!.!.!!||||||||||||!!.:!:|||! ! GluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrL 233145 : GAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACAT : 233204 261 : rgAsnPheLeuArg >>>> Target Intron 1 >>>> LeuValGluAsnThr : 269 !!..!:!||| ! 1315 bp !:!!||||||..! euArgTyrLeuSer++ -+AsnIleGluAsnVal 233205 : TAAGGTATTTGTCTgt.........................ggAATATAGAGAACGTT : 234546 270 : LeuCysTyrSerSerPheValGluIleValGlyCysThrThrIleIleCysLeuValG : 289 :!! ! ! !!!!.!.||||||:!:|||||||||||| !! !!!:|||:!!:!!! MetAsnLeuIleCysLeuValGluLeuValGlyCysThrLeuAsnMetCysMetLeuG 234547 : ATGAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACGTTGAACATGTGCATGCTCG : 234606 290 : lyTyrCysIleIleVal >>>> Target Intron 2 >>>> GluTrpGluAsp : 298 !|||! !:!!:!!..! 189 bp ||| luTyrTyrLeuLeuThr++ ++Glu--------- 234607 : AGTATTATTTACTCACGgt.........................agGAA--------- : 234816 299 : ArgAsnValThrAlaLeuCysSerTyrValThrSerLeuIleSerValIleIleAsnI : 318 !::::: |||..!|||||||||! ! !! !:!:|||:!!! !.!.|||| LysSerLysGluLysLeuAlaSerTyrValIleValTyrValSerMetThrPheAsnI 234817 : AAgtcgaaggaaaaattagCTTCATACGTCATCGTGTACGTGTCCATGACATTtaata : 234873 319 : lePheIleLeuCysPheIleGlyGluTyrIleThrIleGln : 331 ||||||||...|||::!||||||||| :!!||| ||| lePheIlePheCysTyrIleGlyGluThrLeuThrGluGln 234874 : tattcatattttgttACATCGGAGAGACGCTTACAGAGCAG : 234914 vulgar: CbirOr6 9 331 . KQ414889.1 232450 234914 + 390 M 150 450 G 0 3 M 105 315 5 0 2 I 0 1311 3 0 2 M 30 90 5 0 2 I 0 185 3 0 2 M 1 3 G 3 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232451 234914 390 + . gene_id 7 ; sequence CbirOr6 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232451 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232451 233218 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 233219 233220 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233219 234533 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234532 234533 . + . intron_id 0 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 234534 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234534 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 232451 234914 390 + . alignment_id 7 ; Query CbirOr6 ; Align 232451 10 450 ; Align 232904 160 315 ; Align 234534 265 90 ; Align 234813 295 3 ; Align 234816 299 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 357 Query range: 3 -> 259 Target range: 303169 -> 304863 4 : AsnGluHisHisGluAlaAspValLysTyrValValGluGlnSerHisValValLeuA : 23 ||| !:!!:!!:!! !|||:!! ||||||..!:!!!!.||| ! !:!!|||! AsnLeuAsnTyrLysLysAspIleValTyrValThrLysHisSerLysTrpIleLeuL 303170 : AATTTGAATTACAAGAAAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCCTGA : 303227 24 : rgValLeuGlyIleTrpProSerAspArgGlnProAsnThrIleGluArgIleAlaAs : 42 :! !|||||||||||||||:!!! !.!. .!.||| !! ! !:!! !!!! ysSerLeuGlyIleTrpProAlaValLeuAsp---GluThrAlaGlyPheLeuProLy 303228 : AGTCCCTTGGTATTTGGCCAGCCGTGTTGGAC---GAAACCGCAGGATTCCTACCAAA : 303281 43 : nIlePheLeuValIleValCysTyrPhePheLeuHisCysAspMetValProGlyVal : 61 .||| !:!!! !:!! ! !! !!.!.||| ! !:!!:!!||| !!:!! sIleThrIleGlyLeuSerAsnLeuValLeuLeuPhe---ThrValIleProCysIle 303282 : AATCACCATTGGACTCAGTAATTTGGTTCTATTATTC---ACCGTGATACCGTGTATT : 303335 62 : LeuTyrTyrMetPheValAspAspAspValArgGluLysAlaLysMetMetProProI : 81 |||:!! !!:|||! !.!. ! |||..!! ! !!:! !|||:!:.!. !! !: LeuHisIleIlePheGluGlnLysAspThrIleIleArgLeuLysLeuPheGlyLeuL 303336 : CTACACATAATATTCGAACAAAAGGATACGATAATAAGATTGAAACTATTCGGTCTGC : 303395 82 : leMetTyrSerValMetAlaIleAlaLysTyrGlyAsnLeuIleIleHisGluArgAs : 100 !:! !:!!!!:!!!!::!!:!: !|||||| !! !||| !! !..:!!! ! euSerPheCysLeuIleSerLeuMetLysTyrTrpAlaLeuAlaThrArgLysProAr 303396 : TGAGTTTCTGTTTGATCTCGTTGATGAAGTATTGGGCCCTCGCCACGCGGAAACCAAG : 303452 101 : pIleArgSerCysLeuArgHisIleLysGluAspTrpAlaVal >>>> Target I : 115 |||!:!..!|||:!!..!.!.:!::!!...|||||| !! ! 938 gIleLysGluCysIleGluGluValGlnSerAspTrpLysGlu++ 303453 : GATCAAAGAATGTATAGAAGAGGTGCAAAGTGATTGGAAAGAGgt............. : 303499 116 : ntron 1 >>>> MetIleValAspAspAlaArgGluValMetMetIleLysAlaTh : 129 bp :!! ! ! ! ! !||||||:!!|||:!:! ! ! !.! ++ValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGl 303500 : ............agGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCA : 304477 130 : rThrGlyArgArgLeuPheIleLeuCysCysThrPheMetTyrCysAlaGlyIleSer : 148 !! !||||||!.!||| |||:!!|||..!! !||||||||| !!.!|||! !! ! nMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIle 304478 : AATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATT : 304534 149 : TyrAsnThrIleValProLeuSerArgGlySerValIleThrAspGluAsnValThrI : 168 |||:!!|||:!!:!!! !!!!:!!! !|||!!! !:!: !!!: ! ||| !|||| TyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgThrI 304535 : TATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTACGA : 304594 169 : leArgProLeuSerCysProGlyTyrTyrValPhePheAspProGlnAsnSerProAl : 187 ||!:!|||||| !! !||| !||| !!.!!!.|||||| !|||!..|||||| leLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIl 304595 : TTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTAT : 304651 188 : aTyrGluIleValPheLeuLeuGlnCysLeuCysGlyValValMetTyrThrIleThr : 206 !||||||:!:|||!:!!!!:!!!!.|||:!!|||||| !|||!!:|||:!!|||||| eTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThr 304652 : TTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACC : 304708 207 : ValThrIleCysGlyLeuAlaAlaLeuPheValMetHisAlaGlyAlaGlnMetGluI : 226 !.! ! !|||||||||||||||||||||!.!! |||||| !!!.!|||!!:!!:| AlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspI 304709 : GCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATA : 304768 227 : leLeuMetArgLeuIleGluSerLeuValAspAspCysLysPheGluGlnLysAsnIl : 245 ||:!!||| !! !:!:! ..!||||||:!! !.. |||..!...:!!:! leValMetSerArgLeuGlyAspLeuValAsn------SerLysGluSerSerAspLe 304769 : TCGTTATGTCTCGATTGGGTGATCTTGTCAAC------AGCAAAGAATCATCTGATTT : 304819 246 : eAspThrLysLeuAlaIleIleValGluHisGlnIleArgIle : 259 !|||! !::!||| ! !||||||||||||!!.:!:|||||| uAspLysArgLeuIleGluIleValGluHisHisLeuArgIle 304820 : AGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATT : 304863 vulgar: CbirOr6 3 259 . KQ414889.1 303169 304863 + 357 M 30 90 G 1 0 M 20 60 G 1 0 M 59 177 5 0 2 I 0 934 3 0 2 M 122 366 G 2 0 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303170 304863 357 + . gene_id 8 ; sequence CbirOr6 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303170 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303170 303496 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304863 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304863 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 303170 304863 357 + . alignment_id 8 ; Query CbirOr6 ; Align 303170 4 90 ; Align 303260 35 60 ; Align 303320 56 177 ; Align 304435 115 366 ; Align 304801 239 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 352 Query range: 14 -> 259 Target range: 226936 -> 227674 15 : ValGluGlnSerHisValValLeuArgValLeuGlyIleTrpProSerAspArgGlnP : 34 :!!:!! !!:!!.! !:!!|||!:! !||||||||||||||||||...|||:!! IleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgLysS 226937 : ATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAA : 226994 35 : roAsnThrIleGluArgIleAlaAsnIlePheLeuValIleValCysTyrPhePheLe : 53 !::! !|||! !||| ! !::! !!.:!!! !.!!:!!|||||| .!.:! erSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMe 226995 : GCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGAT : 227051 54 : uHisCysAspMetValProGlyValLeuTyrTyrMetPheValAspAspAspValArg : 72 ! !! !!!::!!||| !!.!!! !|||||| :!:.!.! !! ! ! !!.! ! tSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyr 227052 : GAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTAC : 227108 73 : GluLysAlaLysMetMetProProIleMetTyrSerValMetAlaIleAlaLysTyrG : 92 .!.! ! !||||||!!: !|||!!: !:!! !!.!|||:!!:!! !||||||. AsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrS 227109 : AACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACT : 227168 93 : lyAsnLeuIleIleHisGluArgAspIleArgSerCysLeuArgHisIleLysGluAs : 111 .!! |||! .!!|||||| !||||||! !..!|||:!!..!!..|||||| !|| erMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIleLysTrpAs 227169 : CCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGA : 227225 112 : pTrpAlaValMetIleValAspAspAlaArgGluValMetMetIleLysAlaThrThr : 130 |||| ! !!!:! ! ! !!:! !|||.!.||||||:!!! ! ||| ! ! pTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyr 227226 : CTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTAC : 227282 131 : GlyArgArgLeuPheIleLeuCysCysThrPheMetTyrCysAlaGlyIleSerTyrA : 150 ||||||!:!|||.!!! !:!!||| !|||:!:!:! ::: ::: ::: GlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheValPhePheT 227283 : GGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttct : 227342 151 : snThrIleValProLeuSerArgGlySerValIleThr<->AspGluAsnValThrIl : 168 ! !:!!||||||:!!!:! !||||||||| !||| |||! !||| !!:! yrIleValValProIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTy 227343 : acATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTA : 227399 169 : eArgProLeuSerCysProGlyTyrTyrValPhePheAspProGlnAsnSerProAla : 187 !! !! !:!! !!! !||| ! ! :!!.!! !||| !!:: !!|||||| ! rIleGlnMetProPheProPheProLysIleIleAlaAspValArgTyrSerProPhe 227400 : CATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTC : 227456 188 : TyrGluIleValPheLeuLeuGlnCysLeuCysGlyValValMetTyrThrIleThrV : 207 !!|||||| !!|||! !:!!|||! !:!! |||:!!|||:!!:!! !:!!||| AsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuHisGlyValThrS 227457 : AACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGT : 227516 208 : alThrIleCysGlyLeuAlaAlaLeuPheValMetHisAlaGlyAlaGlnMetGluIl : 226 !.!! !|||.!!:!!|||||||||.!!!.!:!:|||||| !!!.!|||||||||:! erAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluVa 227517 : CAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGT : 227573 227 : eLeuMetArgLeuIleGluSerLeuValAspAspCysLysPheGluGlnLysAsnIle : 245 :|||:!! !! !:!:! ! !|||:!!|||! ! ! ! ! !...|||!..:!: lLeuValSerTrpLeuGlyHisLeuIleAspGlyArgAlaAspMetSerLysThrLeu 227574 : GTTGGTGTCCTGGCTGGGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTG : 227630 246 : AspThrLysLeuAlaIleIleValGluHisGlnIleArgIle : 259 ||| !!:!:!!|||! !|||||| |||!!.:!!|||||| AspAspArgIleAlaSerIleValThrHisHisValArgIle 227631 : GATGATAGAATCGCTAGCATCGTCACTCACCACGTTCGAATA : 227674 vulgar: CbirOr6 14 259 . KQ414889.1 226936 227674 + 352 M 148 444 G 0 3 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226937 227674 352 + . gene_id 9 ; sequence CbirOr6 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226937 227674 . + . KQ414889.1 exonerate:protein2genome:local exon 226937 227674 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226937 227674 352 + . alignment_id 9 ; Query CbirOr6 ; Align 226937 15 444 ; Align 227384 163 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 323 Query range: 7 -> 259 Target range: 278561 -> 279335 8 : GluAlaAspValLysTyrValValGluGlnSerHisValValLeuArgValLeuGlyI : 27 .!..!!||| !! !||| !|||:!!..!!:!!.! ! !!|||!:! !:!!|||: AsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyV 278562 : AACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCG : 278619 28 : leTrpProSerAspArgGlnProAsnThrIleGluArgIleAlaAsnIlePheLeuVa : 46 !!|||||| !..!! ! !!.!|||:!:|||!:!|||::!::!:!: !!|||!. alTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAl 278620 : TATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGC : 278676 47 : lIleValCysTyrPhePheLeuHisCysAspMetValProGlyValLeuTyrTyrMet : 65 !:!!:!! !!! !|||.!.:!! !! ! !:!!|||||| !!!.!|||! ! :!! aLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrVal 278677 : GTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTG : 278733 66 : Phe<->ValAspAspAspValArgGluLysAlaLysMetMetProProIleMetTyrS : 84 .!! ! !! !|||:!! ! !||| !||||||!!: !|||:!!! !:!! LeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheC 278734 : CTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCT : 278793 85 : erValMetAlaIleAlaLysTyrGlyAsnLeuIleIleHisGluArgAspIleArgSe : 103 !!..!||||||! !|||||| !! !|||!!: !.!! !! ! ||| !!!. ysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLy 278794 : GCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAA : 278850 104 : rCysLeuArgHisIleLysGluAspTrpAlaValMetIle<-><-><->ValAspAsp : 119 !|||:!!!.! !!|||::: !||||||:!!:!!! :!! :::::: sCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGlu 278851 : ATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagag : 278907 120 : AlaArgGluValMetMetIleLysAlaThrThrGlyArgArgLeuPheIleLeuCysC : 139 ||||||:::|||! ! !!..|||! !! !|||||| !||| |||!!! !!. GluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerA 278908 : gagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCG : 278967 140 : ysThrPheMetTyrCysAlaGlyIleSerTyrAsnThrIleValProLeuSerArgGl : 158 .! !|||||||||! !!.!|||:!!! !|||!.!.!!:!::!!||||||! ! !! laGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaVa 278968 : CCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGT : 279024 159 : ySerValIleThrAspGluAsnValThrIleArgProLeuSerCysProGlyTyrTyr : 177 ! !!..! ! ! !!!:|||! !|||:!:||| !!! !:!!! !||| !||| ! lArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArg 279025 : ACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGC : 279081 178 : ValPhePheAspProGlnAsnSerProAlaTyrGluIleValPheLeuLeuGlnCysL : 197 ! !.!!.!!||||||!::!.!||||||:!!!:!||||||||| !!!:!!||||||| GlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysL 279082 : GGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCT : 279141 198 : euCysGlyValValMetTyrThrIleThrValThrIleCysGlyLeuAlaAlaLeuPh : 216 ||..!!.! !!|||:!:|||:!!:!!|||||| ! !|||.!!||| !|||:!!|| euAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPh 279142 : TGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTT : 279198 217 : eValMetHisAlaGlyAlaGlnMetGluIleLeuMetArgLeuIleGluSerLeuVal : 235 ||||||||||!.! !!!.!|||.!...!||||||:!!! ! !:!:!!:!.!|||:!! eValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIle 279199 : CGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATC : 279255 236 : AspAspCysLysPheGluGln<-><->LysAsnIleAspThrLysLeuAlaIleIleV : 253 |||! ||| ..!:!! !..!.. !!!: !::!|||!.! !|||: AspGlyValLysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleI 279256 : GACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCA : 279315 254 : alGluHisGlnIleArgIle : 259 !!||||||!!.:!:!:!||| leGluHisHisLeuLysIle 279316 : TCGAGCATCATCTGAAGATA : 279335 vulgar: CbirOr6 7 259 . KQ414889.1 278561 279335 + 323 M 59 177 G 0 3 M 50 150 G 0 9 M 126 378 G 0 6 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278562 279335 323 + . gene_id 10 ; sequence CbirOr6 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278562 279335 . + . KQ414889.1 exonerate:protein2genome:local exon 278562 279335 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278562 279335 323 + . alignment_id 10 ; Query CbirOr6 ; Align 278562 8 177 ; Align 278742 67 150 ; Align 278901 117 378 ; Align 279285 243 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 319 Query range: 12 -> 259 Target range: 266637 -> 267384 13 : TyrValValGluGlnSerHisValValLeuArgValLeuGlyIleTrpProSerAspA : 32 ||| !:!!:!! !!:!!.. ! !!|||!:! !:!!||| !|||||| !! TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuS 266638 : TACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGT : 266695 33 : rgGlnProAsnThrIleGluArgIleAlaAsnIlePheLeuValIleValCysTyrPh : 51 !! !!::!! !:!!|||||||||!.!::! ! !|||:!!:!!:!!||||||! erLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCy 266696 : CACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTG : 266752 52 : ePheLeuHisCysAspMetValProGlyValLeuTyrTyrMetPheValAspAspAsp : 70 !! !:!!! ! ! !:!::!!||| !!:!!!!!:!! !:!:.!.! !|||!!:..! sSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSer 266753 : CTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGT : 266809 71 : ValArgGluLysAlaLysMetMetProProIleMetTyrSerValMetAlaIleAlaL : 90 :!!||| !|||!.!|||:!!.!. !|||:!:! :!!!!! !!:!:!.! ! !! IleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleA 266810 : ATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTA : 266869 91 : ysTyrGlyAsnLeuIleIleHisGluArgAspIleArgSerCysLeuArgHisIleLy : 109 !.||| !!..|||:!::!!!.!...!:!!!:||||||.!!|||:!!..!|||!!::! snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 266870 : ACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCA : 266926 110 : sGluAspTrpAlaValMetIleValAspAspAlaArgGluValMetMetIleLysAla : 128 ! !|||||| !:!!:!!! ! ! !!:! !!:!:!!||||||:!!! !!.||| nThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAla 266927 : AACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCG : 266983 129 : ThrThrGlyArgArgLeuPheIleLeuCysCysThrPheMetTyrCysAlaGlyIleS : 148 ! !! !|||||| !:!! !|||!!!|||....!!|||||| ! |||!.!! !:!!. ArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuG 266984 : AGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCG : 267043 149 : erTyrAsnThrIleValProLeuSerArgGlySerVal<->IleThrAspGluAsnVa : 166 !!||| !..!|||..! !!!!!!!!! ! !!!!||| :!! !:!!|||!.! lyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrAr 267044 : GCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAG : 267100 167 : lThrIleArgProLeuSerCysProGlyTyrTyrValPhePheAspProGlnAsnSer : 185 !! !:!!!.!! !||| !!||| !!! !||| ! !.!..!!! !.!.!.!||| gIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSer 267101 : GATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGC : 267157 186 : ProAlaTyrGluIleValPheLeuLeuGlnCysLeuCysGlyValValMetTyrThrI : 205 |||.!! !!|||||||||.!!:!!! !|||! !:!!! ||| !!:!!:!! !!:!!! ProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerS 267158 : CCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGA : 267217 206 : leThrValThrIleCysGlyLeuAlaAlaLeuPheValMetHisAlaGlyAlaGlnMe : 224 !..!||| ! !! !.!!|||||||||:!!|||!.! |||||| !!!.!|||:! erValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLe 267218 : GCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCT : 267274 225 : tGluIleLeuMetArgLeuIleGluSerLeuValAspAspCysLysPheGluGlnLys : 243 !...:!:||||||! !! !|||:!!..!!!!|||:!! ! !!:! !....!.||| uSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLys 267275 : GAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAG : 267331 244 : AsnIle<->AspThrLysLeuAlaIleIleValGluHisGlnIleArgIle : 259 |||:!! ! !|||:!!!.!:!::!!|||||||||!!.:!:|||:!! AsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgVal 267332 : AACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTT : 267384 vulgar: CbirOr6 12 259 . KQ414889.1 266637 267384 + 319 M 148 444 G 0 3 M 85 255 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266638 267384 319 + . gene_id 11 ; sequence CbirOr6 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266638 267384 . + . KQ414889.1 exonerate:protein2genome:local exon 266638 267384 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266638 267384 319 + . alignment_id 11 ; Query CbirOr6 ; Align 266638 13 444 ; Align 267085 161 255 ; Align 267343 246 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 299 Query range: 12 -> 259 Target range: 262849 -> 263596 13 : TyrValValGluGlnSerHisValValLeuArgValLeuGlyIleTrpProSerAspA : 32 ||| !:!!:!! !!:!!.. !:!!|||!:! !:!!||| !|||||| !..! TyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerA 262850 : TACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCG : 262907 33 : rgGlnProAsnThrIleGluArgIleAlaAsnIlePheLeuValIleValCysTyrPh : 51 !..! !:::! !!!:||||||||| ! .!!.!!|||:!!:!!|||||||||! laSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCy 262908 : CCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTG : 262964 52 : ePheLeuHisCysAspMetValProGlyValLeuTyrTyrMetPheValAspAspAsp : 70 !.!!:!!! ! ! !:!::!!|||..!:!!|||:!! !:!:.!.! !! !!!::!! sLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsn 262965 : TCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAAT : 263021 71 : ValArgGluLysAlaLysMetMetProProIleMetTyrSerValMetAlaIleAlaL : 90 !!!.! !||| !:!!:!::!: !|||:!! ! !!! !!:!:!.!!!: !! PheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleA 263022 : TTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCA : 263081 91 : ysTyrGlyAsnLeuIleIleHisGluArgAspIleArgSerCysLeuArgHisIleLy : 109 !.||| ! |||:!::!!|||...!:!||||||!:!.!!|||:!!!:!|||:!::! snTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGl 263082 : ATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCA : 263138 110 : sGluAspTrpAlaValMetIleValAspAspAlaArgGluValMetMetIleLysAla : 128 !|||||||||..!:!!:!!! ! ! !!:! !!:!...:!!|||:!!! !!.||| nGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAla 263139 : GGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCG : 263195 129 : ThrThrGlyArgArgLeuPheIleLeuCysCysThrPheMetTyrCysAlaGlyIleS : 148 ! ! !|||||| !:!! !! !|||...! !|||||| ! .!!.!!|||! LysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGln---ThrSerIleM 263196 : AAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAA---ACGAGCATCA : 263252 149 : erTyrAsnThrIleValProLeuSerArgGlySerValIleThrAspGluAsnValTh : 167 !! !!!. !:!!||| !! !! !! ! !..!|||||| !|||! |||! !|| etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 168 : r<-><->IleArgProLeuSerCysProGlyTyrTyrValPhePheAspProGlnAsn : 184 | :!!||| !||| !!||||||! !||| ! ! !.!!.!! !.!.!.. rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 185 : SerProAlaTyrGluIleValPheLeuLeuGlnCysLeuCysGlyValValMetTyrT : 204 !:!|||.!! !!|||||| !!.!! ! !|||! !|||! ||| !!:!!:!: !. AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 205 : hrIleThrValThrIleCysGlyLeuAlaAlaLeuPheValMetHisAlaGlyAlaGl : 223 !!! !|||||| ! !! !|||:!!.!!|||:!!|||!.! |||||| !!!.!|| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 224 : nMetGluIleLeuMetArgLeuIleGluSerLeuValAspAspCysLysPheGluGln : 242 |:!!.!.:!:|||||| !! !||| !..!!!!|||:!!.!.! !!:! !|||.!. nLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsn 263484 : GTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAAT : 263540 243 : LysAsnIle<->AspThrLysLeuAlaIleIleValGluHisGlnIleArgIle : 259 ||||||:!! !|||:!!:!!!.!:!:||||||||||||!!.:!:|||:!! LysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgVal 263541 : AAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTT : 263596 vulgar: CbirOr6 12 259 . KQ414889.1 262849 263596 + 299 M 131 393 G 1 0 M 23 69 G 0 6 M 78 234 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262850 263596 299 + . gene_id 12 ; sequence CbirOr6 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262850 263596 . + . KQ414889.1 exonerate:protein2genome:local exon 262850 263596 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 262850 263596 299 + . alignment_id 12 ; Query CbirOr6 ; Align 262850 13 393 ; Align 263243 145 69 ; Align 263318 168 234 ; Align 263555 246 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 233 Query range: 3 -> 191 Target range: 294660 -> 295227 4 : AsnGluHisHisGluAlaAspValLysTyrValValGluGlnSerHisValValLeuA : 23 :!!!!: !:!!..! !|||||| ! !! !:!!:!! ! !!!!.. !:!!|||! AspAspThrAsnArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuL 294661 : GACGATACTAACAGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGA : 294718 24 : rgValLeuGlyIleTrpPro<->SerAspArgGlnProAsnThrIleGluArgIleAl : 41 :! !:!!|||:!!|||||| ! ! !!!!!!!. !!!:!! !:!:.!.!:!:!! ysProIleGlyLeuTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLe 294719 : AACCGATCGGTCTTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCT : 294775 42 : aAsnIlePheLeuValIleValCysTyrPhePheLeuHisCysAspMetValProGly : 60 !:::|||.!!|||:!! !||| !!. !:!!! ! !! !:!:|||||| !! uSerIleIleLeuIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCys 294776 : TTCGATAATTCTGATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGC : 294832 61 : ValLeuTyrTyrMetPheValAspAspAspValArgGluLysAlaLysMetMetProP : 80 ! !! !!:!! !:!:||| !! :::|||::: ||| !|||:!::!! !| GlyTyrPheCysValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyP 294833 : GGATACTTCTGTGTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTC : 294892 81 : roIleMetTyrSerValMetAlaIleAlaLysTyrGlyAsnLeuIleIleHisGluAr : 99 ||:!!:!:||||||:!!:!::!!!!: !!:!|||.!! !|||:!!:!: ! !! roValLeuTyrSerMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrPr 294893 : CGGTACTATACTCTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCC : 294949 100 : gAspIleArgSerCysLeuArgHisIleLysGluAspTrpAlaValMetIleValAsp : 118 !! .!!!:! !|||:!!..! !!|||:!!.!.|||||| !:!!!!: ! ! oAlaPheLysHisCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnPro 294950 : CGCGTTCAAGCATTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCG : 295006 119 : AspAlaArgGluValMetMetIleLysAlaThrThrGlyArgArgLeuPheIleLeuC : 138 !!: !|||! !:!!|||!!:! !!.|||! !..! !!:!|||:!! !:!! !! GluHisArgAlaIleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaP 295007 : GAACACCGAGCGATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTT : 295066 139 : ysCysThrPheMetTyrCysAlaGlyIleSerTyrAsnThrIleValProLeuSerAr : 157 ! !! !.!.!!:||| !!:!!!.!:!:||||||:!!.!!|||||||||... heThrIleIleIleTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSe 295067 : TTACTATTATAATCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttc : 295123 158 : gGlySerValIleThrAspGluAsnValThrIleArgProLeuSerCysProGlyTyr : 176 ...::::!! !.! ! :!!||| !||||||||| !!||| !! !||||||||| rAsnAlaLeuGluAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyr 295124 : aaacgctTTGGAGAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTAC : 295180 177 : TyrValPhePheAspProGlnAsnSerProAlaTyrGluIleVal : 191 ! :!!||| ! ||| !! ! ::!||||||.!!|||||||||:!! GluLeuPheValAspAlaTyrSerSerProThrTyrGluIleIle 295181 : GAGTTATTCGTAGACGCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: CbirOr6 3 191 . KQ414889.1 294660 295227 + 233 M 26 78 G 0 3 M 162 486 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294661 295227 233 + . gene_id 13 ; sequence CbirOr6 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294661 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294661 295227 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294661 295227 233 + . alignment_id 13 ; Query CbirOr6 ; Align 294661 4 78 ; Align 294742 30 486 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 209 Query range: 294 -> 384 Target range: 206050 -> 206401 295 : GluTrpGluAspArgAsnValThrAlaLeuCysSerTyrValThrSerLeuIleSerV : 314 |||||||||:!!!.!|||..!||||||:!! !|||:!!|||! !! !|||||| GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 315 : alIleIleAsnIlePheIleLeuCysPheIleGlyGluTyrIleThrIleGln >>> : 332 !! !.!! !:!!||||||||||||!:!||||||:!! !:!!! ! !||| ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 333 : > Target Intron 1 >>>> AlaAspGluValSerLeuThrLeuCysThrLeuA : 343 81 bp ! !!! |||.!!||||||! !||||||:!!| ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 344 : snTrpTyrArgLeuProIleSerThrValArgAsnMetValLeuIleThrAlaAlaSe : 362 |||||||||||||||||! !!!! !!.!|||::!|||:!!||||||! !||| !|| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 363 : rSerValProProGlnIleThrAlaGlyLysPheIleAspLeuSerPheArgThrPhe : 381 |!:! !||| !:!!:!!||||||||||||.!..!!!!::!!|||!!. !!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 382 : GlyAspVal : 384 !|||||| ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: CbirOr6 294 384 . KQ414889.1 206050 206401 + 209 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 209 + . gene_id 14 ; sequence CbirOr6 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 209 + . alignment_id 14 ; Query CbirOr6 ; Align 206051 295 111 ; Align 206243 332 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 294 -> 397 Target range: 258264 -> 258732 295 : GluTrpGluAspArgAsnValThrAlaLeuCysSerTyrValThrSerLeuIleSerV : 314 ||||||... !:::::::: ||| |||||| !!! !! !|||||||||: GluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheMetIleLeuIleSerL 258265 : gaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTATGATACTCATATcac : 258322 315 : alIleIleAsnIlePheIleLeuCysPheIleGlyGluTyrIleThrIleGln >>> : 332 :: ...|||||||||::::::|||::!||||||||| :!!||| !||| euSerPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluGln++ 258323 : tttctttcaatatttttgtaatatgttACATAGGTGAAATATTAACAGAACAGgt... : 258378 333 : > Target Intron 1 >>>> AlaAspGluValSerLeuThrLeuCysThrLeuA : 343 90 bp ..! ! :!!|||.!! !..!:!!! !! ! !: ++CysLysLysValGlyAspValValTyrMetThrA 258379 : ......................agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAG : 258499 344 : snTrpTyrArgLeuProIleSerThrValArgAsnMetValLeuIleThrAlaAlaSe : 362 !!|||||| !|||||| !!.!! !:!!! !:!!:!::!!|||:!!! !||| !|| spTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLeuValIleAlaArgSe 258500 : ACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTTGGTAATCGCACGATC : 258556 363 : rSerValProProGlnIleThrAlaGlyLysPheIleAspLeuSerPheArgThrPhe : 381 ||||||| ! !|||||||||||||||||||||... ::!|||.!! !|||||| rSerValValValGlnIleThrAlaGlyLysPhePheHisMetSerIleTyrThrPhe 258557 : GAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatGTCCATTTACACATTC : 258613 382 : GlyAsp >>>> Target Intron 2 >>>> ValIleLysSerAlaValIleTy : 391 .!!||| 69 bp |||||||||!!!:!! !! || SerAsp++ ++ValIleLysThrSerPheAlaTy 258614 : AGCGATgt.........................agGTAATAAAAACCTCTTTCGCGTA : 258712 392 : rLeuAsnMetLeuArgGln : 397 |||||||:!:||||||||| rLeuAsnLeuLeuArgGln 258713 : TTTGAATTTACTGCGTCAA : 258732 vulgar: CbirOr6 294 397 . KQ414889.1 258264 258732 + 205 M 37 111 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258265 258732 205 + . gene_id 15 ; sequence CbirOr6 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258732 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258732 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258265 258732 205 + . alignment_id 15 ; Query CbirOr6 ; Align 258265 295 111 ; Align 258466 332 156 ; Align 258691 384 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 192 Query range: 155 -> 269 Target range: 300162 -> 302238 156 : SerArgGlySerValIleThrAspGluAsnValThrIleArgProLeuSerCysProG : 175 |||!:!..!! !..! !! ! |||||| !||| !!:!||||||:!!! !|||| SerLysAsnTyrThrTyrLysArgGluAsnTyrThrTyrLysProLeuAlaTyrProG 300163 : AGCAAGAATTACACTTACAAAAGGGAGAATTACACTTACAAACCGTTAGCCTATCCTG : 300220 176 : lyTyrTyrValPhePheAspProGlnAsnSerProAlaTyrGluIleValPheLeuLe : 194 ||||| !! !|||.!!||| !!|||!.!||||||.!!|||||||||||||||..... lyTyrAspTrpPheIleAspThrGlnThrSerProThrTyrGluIleValPhePhePh 300221 : GCTACGATTGGTTTATCGATACACAAACCAGTCCTACCTACGAgatcgtatttttctt : 300277 195 : uGlnCysLeuCysGlyValValMetTyrThrIleThrValThrIleCysGlyLeuAla : 213 ....|||.!!...!.!:!!:!!||||||!.!:!:|||..!.!! ! !.!!|||||| eHisCysPheAlaAlaMetIleMetTyrAsnValThrThrAlaAlaTyrSerLeuAla 300278 : tcactgttTCGCAGCGATGATCATGTACAACGTGACAACGGCAGCGTACAGTTTGGCG : 300334 214 : AlaLeuPheValMetHisAlaGlyAlaGlnMetGluIleLeuMetArgLeuIleGluS : 233 |||:!!||||||! ||| ! !!!.!|||!!::!!|||! !||| ! !:!:|||. AlaIlePheValThrHisIleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluA 300335 : GCGATATTCGTCACTCATATCTGTGGACAGATTCAGATACAGATGGCGAGATTGGAGG : 300394 234 : erLeuValAspAspCysLysPheGluGlnLysAsnIleAspThrLysLeuAlaIleIl : 252 .!||||||!!: ! :!!.!. ! ..! !||| !! !:!!!.!|||:! spLeuValGluArgThrGlyGluLysAspAspGlyProAspProLeuValValIleVa 300395 : ATCTGGTGGAGAGGACGGGAGAGAAGGACGACGGTCCTGATCCTTTGGTCGTTATCGT : 300451 253 : eValGluHisGlnIleArgIle{Ar} >>>> Target Intron 1 >>>> {g} : 260 ! !!!:||| !! !:!!{||} 1734 bp {|} lArgAspHisValLysValLeu{Ar}++ --{g} 300452 : TCGAGATCACGTGAAGGTTTTA{AG}gt.........................ga{a} : 302211 261 : AsnPheLeuArgLeuValGluAsnThr : 269 |||||| |||::!:!!||||||||| AsnPheHisArgIleIleGluAsnThr 302212 : aattttcatcgcatAATCGAAAATACT : 302238 vulgar: CbirOr6 155 269 . KQ414889.1 300162 302238 + 192 M 104 312 S 0 2 5 0 2 I 0 1730 3 0 2 S 1 1 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300163 302238 192 + . gene_id 16 ; sequence CbirOr6 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300163 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300163 300476 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 302210 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 302209 302210 . + . intron_id 0 ; splice_site "ga" KQ414889.1 exonerate:protein2genome:local cds 302211 302238 . + . KQ414889.1 exonerate:protein2genome:local exon 302211 302238 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300163 302238 192 + . alignment_id 16 ; Query CbirOr6 ; Align 300163 156 312 ; Align 302212 261 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 260 -> 331 Target range: 214459 -> 214740 261 : AsnPheLeuArgLeuValGluAsnThrLeuCysTyrSerSerPheValGluIleValG : 280 !..||||||..!|||||||||!!..!!||| ! ! !||||||!.!|||:!!:!!! ArgPheLeuGluLeuValGluLysAlaLeuArgGlnValSerPheAlaGluLeuLeuV 214460 : AGATTCTTAGAGCTCGTGGAGAAAGCACTTCGGCAAGTATCTTTCGCTGAATTATTAG : 214517 281 : lyCysThrThrIleIleCysLeuValGlyTyrCysIleIleVal >>>> Target : 295 !||||||..!! !:!!|||||||||||||||! !||||||..! 68 alCysThrValAsnLeuCysLeuValGlyTyrTyrIleIleThr++ 214518 : TATGCACGGTGAATCTCTGTCTCGTTGGATATTACATAATAACGgt............ : 214564 296 : Intron 1 >>>> GluTrpGluAspArgAsnValThrAlaLeuCysSerTyrValT : 309 bp ||||||.!....!.!|||:!!|||.!! ! !!!||||||. ++GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValV 214565 : .............aggAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGG : 214672 310 : hrSerLeuIleSerValIleIleAsnIlePheIleLeuCysPheIleGlyGluTyrIl : 328 .!! !! !||||||::: ...||||||||||||...|||::!||||||||| !:! alLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuVa 214673 : TGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGGCGAGCTTGT : 214729 329 : eThrIleGln : 331 ::!! !||| lSerGluGln 214730 : GTCTGAACAG : 214740 vulgar: CbirOr6 260 331 . KQ414889.1 214459 214740 + 166 M 34 102 5 0 2 I 0 64 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214460 214740 166 + . gene_id 17 ; sequence CbirOr6 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214460 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214460 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214460 214740 166 + . alignment_id 17 ; Query CbirOr6 ; Align 214460 261 102 ; Align 214630 295 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 260 -> 336 Target range: 260779 -> 261859 261 : AsnPheLeuArgLeuValGluAsnThrLeuCysTyrSerSerPheValGluIleValG : 280 !:!|||:!! !! !:!!|||:!!..!:!! ! ! !!!!|||:!!|||:!: !! SerPheIleSerArgIleGluAspValMetAsnArgIleCysPheLeuGluLeuPheA 260780 : AGCTTCATATCGCGTATCGAGGATGTGATGAACCGGATATGCTTCCTGGAGTTGTTCA : 260837 281 : lyCysThrThrIleIleCysLeuValGlyTyrCysIleIleVal >>>> Target : 295 !!|||||| ! !|||||||||:!!||||||! !|||:!!:!! 85 rgCysThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeuMet++ 260838 : GGTGCACTCTGGATATATGTCTACTTGGCTACTATATTCTTATGgt............ : 260884 296 : Intron 1 >>>> GluTrpGluAspArgAsnValThrAlaLeuCysSerTyrValT : 309 2 bp ||||||! !!:!:!:!!:!! ! !|||! !!!!||| !!! ++GluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheM 260885 : .............agGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCA : 261776 310 : hrSerLeuIleSerValIleIleAsnIlePheIleLeuCysPheIleGlyGluTyrIl : 328 !! !||||||:!!:!! !.!!|||:!!||||||:!!|||!:!||||||||| :! etMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLe 261777 : TGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACT : 261833 329 : eThrIleGlnAlaAspGluValSer : 336 !||| !|||!.!.!..!.:!!::: uThrGluGlnValGlnHisLeuAla 261834 : AACGGAACAGGTACAACATTTGGca : 261859 vulgar: CbirOr6 260 336 . KQ414889.1 260779 261859 + 161 M 34 102 5 0 2 I 0 848 3 0 2 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 260780 261859 161 + . gene_id 18 ; sequence CbirOr6 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 260780 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260780 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261859 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261859 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 260780 261859 161 + . alignment_id 18 ; Query CbirOr6 ; Align 260780 261 102 ; Align 261734 295 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 260 -> 331 Target range: 210495 -> 210774 261 : AsnPheLeuArgLeuValGluAsnThrLeuCysTyrSerSerPheValGluIleValG : 280 !:!|||:!! !|||..!|||||| !||| ! ! ! !|||!!.:!!|||!!:|||| SerPheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGluMetValG 210496 : AGTTTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAATGGTGG : 210553 281 : lyCysThrThrIleIleCysLeuValGlyTyrCysIleIleVal >>>> Target : 295 |||||||| !! !!!:|||!!!:!!||||||! !! !!::!! 66 lyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210554 : GGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt............ : 210600 296 : Intron 1 >>>> GluTrpGluAspArgAsnValThrAlaLeuCysSerTyrValT : 309 bp ||||||!!:..!!:!:!! !! !::! ! !!!|||:!!. ++GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleV 210601 : .............agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAG : 210706 310 : hrSerLeuIleSerValIleIleAsnIlePheIleLeuCysPheIleGlyGluTyrIl : 328 .! !|||! !||||||! .!!||||||||||||!!!|||!:!||||||||| :! alLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLe 210707 : TACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTT : 210763 329 : eThrIleGln : 331 :.!! !||| uAlaGluGln 210764 : GGCTGAACAg : 210774 vulgar: CbirOr6 260 331 . KQ414889.1 210495 210774 + 146 M 34 102 5 0 2 I 0 62 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210496 210774 146 + . gene_id 19 ; sequence CbirOr6 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 210496 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210496 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210496 210774 146 + . alignment_id 19 ; Query CbirOr6 ; Align 210496 261 102 ; Align 210664 295 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 265 -> 339 Target range: 279924 -> 280226 266 : ValGluAsnThrLeuCysTyrSerSerPheValGluIleValGlyCysThrThrIleI : 285 :!!|||... !||| ! ! ! !!!!|||||||||:!::!!||||||||| !! !| IleGluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsnI 279925 : ATCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACA : 279982 286 : leCysLeuValGlyTyrCysIleIleVal >>>> Target Intron 1 >>>> : 295 |||||!!!:!! !|||! !:!!:!!..! 80 bp leCysPheLeuThrTyrTyrLeuLeuThr++ ++ 279983 : TATGCTTTTTGACATATTATTTACTCACGgt.........................ag : 280090 296 : GluTrpGluAspArgAsnValThrAlaLeuCysSerTyrValThrSerLeuIleSerV : 314 |||||||||.!.!.!:!!!.!! !!.! !! !!!!|||:!!! !! !|||||||||: GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerL 280091 : GAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTT : 280149 315 : alIleIleAsnIlePheIleLeuCysPheIleGlyGluTyrIleThrIleGlnAlaAs : 333 !!! .!!|||:!!||||||||||||!:!||||||||| !:!!:!! !|||... euThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGlnValPh 280150 : TAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggtatt : 280206 334 : pGluValSerLeuThrLeu : 339 :::||| |||:!! ePheIleSerSerThrIle 280207 : tttcatttcttcaacGATC : 280226 vulgar: CbirOr6 265 339 . KQ414889.1 279924 280226 + 143 M 29 87 5 0 2 I 0 76 3 0 2 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 279925 280226 143 + . gene_id 20 ; sequence CbirOr6 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 279925 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279925 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280226 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280226 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 279925 280226 143 + . alignment_id 20 ; Query CbirOr6 ; Align 279925 266 87 ; Align 280092 295 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 330 -> 399 Target range: 277551 -> 277842 331 : GlnAlaAspGluValSerLeuThrLeuCysThrLeuAsnTrpTyrArgLeuProIleS : 350 |||..! ! :!!|||.!! !..!:!!! !! ! !||||||||| !|||||| !! GlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAspL 277552 : CAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCGACA : 277609 351 : erThrValArgAsnMetValLeuIleThrAlaAlaSerSerValProProGlnIleTh : 369 .! !:!!! !|||:!!:!!||||||! !:!! !||||||::: :::||||| ysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIleTh 277610 : AAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaattac : 277666 370 : rAlaGlyLysPheIleAspLeuSerPheArgThrPheGlyAsp >>>> Target I : 384 ||||||||||...|||...:::||| ! !|||||||||||| 84 rAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAsp++ 277667 : cgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATgt............. : 277713 385 : ntron 1 >>>> ValIleLysSerAlaValIleTyrLeuAsnMetLeuArgGlnPh : 398 bp |||||||||!!!.!! !! |||||||||:::||||||||| ++ValIleLysThrThrPheAlaTyrLeuAsnIleLeuArgGlnTh 277714 : ............agGTAATAAAAACCACTTTCgcgtatttaaatattctacgCCAAAC : 277837 399 : eThr : 399 ||| rThr 277838 : GACG : 277842 vulgar: CbirOr6 330 399 . KQ414889.1 277551 277842 + 142 M 53 159 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277552 277842 142 + . gene_id 21 ; sequence CbirOr6 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277552 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277552 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277552 277842 142 + . alignment_id 21 ; Query CbirOr6 ; Align 277552 331 159 ; Align 277795 384 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 342 -> 384 Target range: 235021 -> 235147 343 : AsnTrpTyrArgLeuProIleSerThrValArgAsnMetValLeuIleThrAlaAlaS : 362 .!.||||||||||||||| !!.!|||!.!! !..!:!!|||:!!|||! !:!! !| GluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgS 235022 : GAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGT : 235079 363 : erSerValProProGlnIleThrAlaGlyLysPheIleAspLeuSerPheArgThrPh : 381 |||||:!! ! !:!!||||||||||||||||||:!!.!.:!!||| !! !||||| erSerMetValIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPh 235080 : CGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATT : 235136 382 : eGlyAspVal : 384 |||||||||| eGlyAspVal 235137 : TGGCGATGTG : 235147 vulgar: CbirOr6 342 384 . KQ414889.1 235021 235147 + 113 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 235022 235147 113 + . gene_id 22 ; sequence CbirOr6 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 235022 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 235022 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 235022 235147 113 + . alignment_id 22 ; Query CbirOr6 ; Align 235022 343 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 178 -> 236 Target range: 202712 -> 202886 179 : PhePheAspProGlnAsnSerProAlaTyrGluIleValPheLeuLeuGlnCysLeuC : 198 .!!.!!||| !::! !!||||||!.! !!|||||| !!|||! !:!!!:! !:!!. IleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleValA 202713 : ATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAG : 202770 199 : ysGlyValValMetTyrThrIleThrValThrIleCysGlyLeuAlaAlaLeuPheVa : 217 .!! !:!!:!!!!::!! !:!!|||||| ! !||| !!|||.!!|||||||||!. laValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAl 202771 : CTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGC : 202827 218 : lMetHisAlaGlyAlaGlnMetGluIleLeuMetArgLeuIleGluSerLeuValAsp : 236 !:!:|||! ! !!!.!||||||!!::!!|||||| !! !:!:||| !|||:!!||| aValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMetAsp 202828 : GGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGAT : 202884 vulgar: CbirOr6 178 236 . KQ414889.1 202712 202886 + 104 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202713 202886 104 + . gene_id 23 ; sequence CbirOr6 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202713 202886 . + . KQ414889.1 exonerate:protein2genome:local exon 202713 202886 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202713 202886 104 + . alignment_id 23 ; Query CbirOr6 ; Align 202713 179 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 294 -> 342 Target range: 238411 -> 238555 295 : GluTrpGluAspArgAsnValThrAlaLeuCysSerTyrValThrSerLeuIleSerV : 314 ||||||! !!!:!!!:!!!.!! ! !||| !!!!||| !!..!:!!|||:!!:!!: GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheValAlaLeuValAlaI 238412 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTGTAGCACTCGTTGCTA : 238469 315 : alIleIleAsnIlePheIleLeuCysPheIleGlyGluTyrIleThrIleGlnAlaAs : 333 !!:!! !|||! !||||||||||||!:!|||.!!||| :!:||| !|||!.!.! leValSerAsnThrPheIleLeuCysTyrIleSerGluArgLeuThrGluGlnValGl 238470 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGAAAGGCTGACAGAACAGGTACA : 238526 334 : pGluValSerLeuThrLeuCysThrLeu : 342 .|||:!!!:!! ! !|||...|||||| nGluIleAsn***ArgLeuAlaThrLeu 238527 : AGAGATTAATTAACGATTAGCAACATTG : 238555 vulgar: CbirOr6 294 342 . KQ414889.1 238411 238555 + 102 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238412 238555 102 + . gene_id 24 ; sequence CbirOr6 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238412 238555 . + . KQ414889.1 exonerate:protein2genome:local exon 238412 238555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238412 238555 102 + . alignment_id 24 ; Query CbirOr6 ; Align 238412 295 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 294 -> 328 Target range: 305100 -> 305202 295 : GluTrpGluAspArgAsnValThrAlaLeuCysSerTyrValThrSerLeuIleSerV : 314 !!:||||||..!!!!|||..!..!::!||| !!!|||..!..!! !|||||||||| AspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValLeuLeuIleSerV 305101 : GATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGTTACTGATATCTG : 305158 315 : alIleIleAsnIlePheIleLeuCysPheIleGlyGluTyrIle : 328 ||! !.!!||||||||||||||||||!:!||||||||| !:!! alThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeu 305159 : TAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTT : 305202 vulgar: CbirOr6 294 328 . KQ414889.1 305100 305202 + 100 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305101 305202 100 + . gene_id 25 ; sequence CbirOr6 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305101 305202 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305101 305202 100 + . alignment_id 25 ; Query CbirOr6 ; Align 305101 295 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1150 Query range: 9 -> 412 Target range: 208170 -> 212084 10 : AsnSerValGluLeuValHisAspHisGluGluAspMetArgLeuSerIleGlnLeuA : 29 !....!:!! ||| !...:!!:!!:!!.!.|||:!!!!!!!!!:!:!!!::|||| ArgGlnIlePheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuA 208171 : AGACAAATATTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGA : 208228 30 : snArgTrpLeuLeuGlnProLeuGlyAlaTrpProArgSerAlaGlyIleSerSerMe : 48 || !||| !|||:!! !:!!|||:!!|||||||||||| !! ! !|||!!!:! snValTrpThrLeuLysIleIleGlySerTrpProArgSerIleAspArgSerTrpLe 208229 : ACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTT : 208285 49 : tGluArgTyrThrTyrThrLeuValAsnValIleCysThrGlyLeuIleGlyPheIle : 67 :|||!.! ! !:!!! !|||:!!||||||:!! !! ! !!|||:!!||||||||| uGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIle 208286 : AGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATC : 208342 68 : LeuValProThrValValTyrMetThrLeuGluIleGluAspThrTyrAsnThrLeuL : 87 :!!:!!||||||! !:!!!:! !! !|||! !:!!|||||| !|||:!! !|||| ValIleProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuL 208343 : GTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAA : 208402 88 : ysLeuSerGlyProValSerPhePheValMetAlaIleIleLysTyrSerSerLeuIl : 106 ||:!!!!!.!! !!:!!|||||||||:!!||||||.!!! |||||| !! !:!!! ysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetTh 208403 : AGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGAC : 208459 107 : ePheArgGluAsnAspIleArgLysGlyIleLysTyrIleGluAsnAspTrpMetAsn : 125 ! !!||||||..!|||||||||||| !!:!!:!!|||:!!||| !||||||! ||| rValArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsn 208460 : TGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAAC : 208516 126 : ThrArgTyrGlnAsnAspArgIleIleMetIleLysSerAlaLysPheGlyArgArgL : 145 ..!..!:!!:!!.!.||||||! ||||||:!: ! !:!|||!..|||!.!|||!:!| ValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysL 208517 : GTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAAC : 208576 146 : euValValIleCysAlaPhePheMetTyrGlyGlyAlaValPheTyrTyrLeuAlaLe : 164 ||:!!|||||||||!.! !|||||||||||||||...:::|||||||||:!!||||| euIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLe 208577 : TGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTT : 208633 165 : uProPheSerLysGlyThrIleThrGluAspAspAspAsnLeuThrTyrArgProLeu : 183 ||||.!!!!!::!! !! !:!!..!|||!!:! !! !||||||||||||||| !||| uProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeu 208634 : GCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTG : 208690 184 : ValTyrProValAlaArgValIleValAspAlaArgHisSerProIleSerGluIleP : 203 |||||||||||| !!!:! !!|||:!!|||!.!|||:!!||||||:!:!:!||||||| ValTyrProValProLysPheIleLeuAspValArgTyrSerProValAsnGluIleP 208691 : GTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTT : 208750 204 : hePheTrpValGlnCysLeuSerGlyPheValAlaHisSerIleThrThrGlyAlaCy : 222 ||!:! !||||||! |||||||||||||||||||||!:!||||||..!|||||||| heTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCy 208751 : TTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTG : 208807 223 : sSerLeuAlaAlaValPheAlaMetHisAlaTyrGlyArgMetGluIleLeuIleGln : 241 |.!!|||||||||:!!.!!||||||||||||! !|||!:!:!!:!!||||||!!:... sGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSer 208808 : CGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCC : 208864 242 : TrpIleGluHisLeuValAspGlyArgGluAspLeuCysGlySerValAspAsnArgL : 261 |||!!:||| ! ||||||||||||||||||||| ! !!:!:!!|||.!.|||| TrpMetGluLysLeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgL 208865 : TGGATGGAGAAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGT : 208924 262 : euAlaMetIleValHisGlnHisValAlaIleLeu{Ar} >>>> Target Intro : 273 |||||! ||||||.!.||||||||| !:!::!!{!.} 1536 bp euAlaAsnIleValGluGlnHisValArgValIle{As}++ 208925 : TGGCTAATATCGTGGAGCAGCATGTTCGAGTGATC{AA}gt................. : 208964 274 : n 1 >>>> {g}PheIleAlaLeuIleAspAsnIleLeuArgGluIleSerValVal : 288 {!}||||||||||||! !!!:|||:!!|||!.!|||||||||:!!:!! ++{n}PheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIle 208965 : ........ag{T}TTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATA : 210541 289 : GluIleAlaGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThrIleThr >> : 307 |||!!:!.!|||||||||||||||||||||||||||||||||||||||!!:! ! GluMetValGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210542 : GAAATGGTGGGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt.. : 210600 308 : >> Target Intron 2 >>>> GluTrpGlySerGlnGluProAlaThrTyrVal : 317 66 bp ||||||! !|||:!!!!:||| !!:! !:!! ++GluTrpAspSerLysAspProIleSerSerLeu 210601 : .......................agGAATGGGACTCTAAAGACCCTATCAGCAGTCTG : 210694 318 : ThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleG : 337 |||||||||:!!||||||! !|||:!!||||||||||||||||||||||||||||||| ThrTyrIleValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleG 210695 : ACGTACATAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCG : 210754 338 : lyGluLeuValThrGluGln >>>> Target Intron 3 >>>> CysLysLys : 346 |||||:!!:!!.!!|||||| 999 bp !||| lyGluValLeuAlaGluGln++ ++ThrValLys 210755 : GTGAAGTGTTGGCTGAACAggt.........................agACAGTAAAA : 211780 347 : IleGlyGluValSerHisMetIleAspTrpTyrArgLeuProGluLysLysGlyLeuA : 366 :!!|||||| !|||:!!||||||||||||||||||:!!|||! !||||||||||||! ValGlyGluLysSerTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuV 211781 : GTTGGAGAAAAGTCTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGG : 211840 367 : laLeuIleLeuIleIleAlaMetSerAsnSerSerPheLysLeuThrAlaAlaAsnLe : 385 .!:!! !|||!!:|||:!!||||||:!!|||!!! !|||:!!||||||!.!||||| alValProLeuMetIleSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLe 211841 : TCGTACCCTTGATGATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCT : 211897 386 : uPheGluLeuSerLeuSerThrPheGlyAsp >>>> Target Intron 4 >>>> : 396 |.!!! ||||||:!!|||!:!||||||||| 104 bp uIleValLeuSerIleSerSerPheGlyAsp++ 211898 : CATCGTTCTTTCAATCAGTAGTTTCGGTGACgt......................... : 211932 397 : ValValArgThrSerValAlaTyrLeuAsnMetLeuArgThrLeuThrSer : 412 |||:!!!:!|||||||||.!!|||||||||||||||||||||!!!|||!!! ++ValIleLysThrSerValThrTyrLeuAsnMetLeuArgThrPheThrThr 211933 : agGTTATCAAGACTTCGGTAACATACTTGAACATGCTACGAACATTCACAACC : 212084 vulgar: CbirOr15 9 412 . KQ414889.1 208170 212084 + 1150 M 263 789 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 995 3 0 2 M 52 156 5 0 2 I 0 100 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208171 212084 1150 + . gene_id 1 ; sequence CbirOr15 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208171 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208171 208961 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211929 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 211930 211931 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 211930 212033 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 212032 212033 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 212034 212084 . + . KQ414889.1 exonerate:protein2genome:local exon 212034 212084 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208171 212084 1150 + . alignment_id 1 ; Query CbirOr15 ; Align 208171 10 789 ; Align 210499 274 99 ; Align 210664 307 111 ; Align 211774 344 156 ; Align 212034 396 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 812 Query range: 0 -> 278 Target range: 221309 -> 222143 1 : MetGlnGlyAspProIleGlnLysThrAsnSerValGluLeuValHisAspHisGluG : 20 |||||| ! !! !.!.!.. !::!|||..!...:!!! !:!!|||:!!:!! MetGlnLysProValThrAspSerLeuSerSerThrArgValGluTyrAspTyrLysT 221310 : ATGCAGAAACCAGTAACAGACAGTCTGTCTTCGACTCGTGTTGAATACGATTACAAGA : 221367 21 : luAspMetArgLeuSerIleGlnLeuAsnArgTrpLeuLeuGlnProLeuGlyAlaTr : 39 !:!!:!!!:!||||||:!:||||||!:!||||||:!!|||:!!|||:!!|||!.!|| hrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleGlyValTr 221368 : CGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTG : 221424 40 : pProArgSerAlaGlyIleSerSerMetGluArgTyrThrTyrThrLeuValAsnVal : 58 ||||!.!||||||..!||||||!!!:!:||||||||| !||| !|||:!!|||||| pProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLeuIleAsnVal 221425 : GCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAACGTC : 221481 59 : IleCysThrGlyLeuIleGlyPheIleLeuValProThrValValTyrMetThrLeuG : 78 :!!||| !.!!|||||| !|||:!!||||||||| ! !:!!|||:!!! !|||| ValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyrValIleLeuG 221482 : GTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTCG : 221541 79 : luIleGluAspThrTyrAsnThrLeuLysLeuSerGlyProValSerPhePheValMe : 97 ||:!!||||||..!||||||! !:!!||||||! !||||||:!!||||||! !||||| luValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysValMe 221542 : AAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGAT : 221598 98 : tAlaIleIleLysTyrSerSerLeuIlePheArgGluAsnAspIleArgLysGlyIle : 116 ||||.!!:!!|||||| ! !||||||.!! !|||||||||||||||:!! !!||| tAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCysIle 221599 : GGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTGCATC : 221655 117 : LysTyrIleGluAsnAspTrpMetAsnThrArgTyrGlnAsnAspArgIleIleMetI : 136 :!! !|||||| ||||||! !|||! !! !|||...!!.|||!:! !||||||| GluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLysAspIleMetI 221656 : GAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAGGATATAATGA : 221715 137 : leLysSerAlaLysPheGlyArgArgLeuValValIleCysAlaPhePheMetTyrGl : 155 ||:!!!:!|||! |||||||||||||||:!!:!!||||||.!!||||||||||||.! leGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheMetTyrSe 221716 : TAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGTACAG : 221772 156 : yGlyAlaValPheTyrTyrLeuAlaLeuProPheSerLysGlyThrIleThrGluAsp : 174 !||| ||||||||||||::!|||:!!||||||||| !|||! !||| !!! !.!. rGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIleProAlaGln 221773 : TggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGCGCAG : 221829 175 : AspAspAsnLeuThrTyrArgProLeuValTyrProValAlaArgValIleValAspA : 194 ||| |||:::|||::: |||:!!|||!:!||| !!:!!||| !!|||||||||. AspValAsnValThrPheIleProMetValPheProPheSerArgPheIleValAspT 221830 : GATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTCGATA : 221889 195 : laArgHisSerProIleSerGluIlePhePheTrpValGlnCysLeuSerGlyPheVa : 213 !!|||:!!||||||:!!!:!||||||.!.|||! !:!!||| !:!!:!!||| !:! hrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyAlaLe 221890 : CTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTT : 221946 214 : lAlaHisSerIleThrThrGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAla : 232 ! !||||||||||||:!!!.!||||||||||||!.!|||:!!||||||:!!|||||| uMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaValHisAla 221947 : GATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCT : 222003 233 : TyrGlyArgMetGluIleLeuIleGlnTrpIleGluHisLeuValAspGlyArgGluA : 252 ! !|||!:!|||:!!:!:|||!!:...|||:!::!!||||||:!!:!!||||||! !| CysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsnGlyArgAlaA 222004 : TGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGCCGGGCGG : 222063 253 : spLeuCysGlySerValAspAsnArgLeuAlaMetIleValHisGlnHisValAlaIl : 271 ||:!!|||..!!:!||||||!..|||:!!|||! !||||||:!!||||||||| !|| spMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnHisValArgIl 222064 : ATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAACACGTTCGAAT : 222120 272 : eLeuArgPheIleAlaLeuIle : 278 ||||!:!!:!:!! !! !||| eLeuGlnTyrValArgCysIle 222121 : ATTGCAGTATGTACGTTGTATC : 222143 vulgar: CbirOr15 0 278 . KQ414889.1 221309 222143 + 812 M 278 834 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221310 222143 812 + . gene_id 2 ; sequence CbirOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221310 222143 . + . KQ414889.1 exonerate:protein2genome:local exon 221310 222143 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221310 222143 812 + . alignment_id 2 ; Query CbirOr15 ; Align 221310 1 834 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 781 Query range: 18 -> 412 Target range: 284508 -> 287341 19 : GluGluAspMetArgLeuSerIleGlnLeuAsnArgTrpLeuLeuGlnProLeuGlyA : 38 !!: !||| !! !! !|||:!!|||:!!|||||||||!!!|||:!!|||:!!|||! AspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyV 284509 : GACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCG : 284566 39 : laTrpProArgSerAlaGlyIleSerSerMetGluArgTyrThrTyrThrLeuValAs : 57 .!||||||! !||| ! !!:!:!!!!!!:!!|||!:! !!:!! !..!:!!:!! alTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAl 284567 : TATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGC : 284623 58 : nValIleCysThrGlyLeuIleGlyPheIleLeuValProThrValValTyrMetThr : 76 :!!||| !! ! !||||||||||||:!!||||||||| !!.!:!!! !! ..! aLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrVal 284624 : GTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTG : 284680 77 : LeuGluIleGluAspThrTyrAsnThr<->LeuLysLeuSerGlyProValSerPheP : 95 |||!!:! ! ! ! ! !:!!||| :!!|||:!!! !||||||:!!||||||! LeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheC 284681 : CTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCT : 284740 96 : heValMetAlaIleIleLysTyrSerSerLeuIlePheArgGluAsnAspIleArgLy : 114 !:!!|||||| |||||||||! !! !||||||! |||! ..! ! ||| !!:! ysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGl 284741 : GCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCA : 284797 115 : sGlyIleLysTyrIleGluAsnAsp{Tr} >>>> Target Intron 1 >>>> : 123 ! !!:!:||| !!|||... |||{||} 1012 bp nCysValLysAspIleArgAlaAsp{Tr}++ +- 284798 : ATGCGTGAAGGACATTCGTGCGGAC{TG}gt.........................ac : 285836 124 : {p}MetAsnThrArgTyrGlnAsnAspArgIleIleMetIleLysSerAlaLysPheG : 142 {|}:!:::: !!! :::...:::||| ||||||! ! ||||||!:!.!!| {p}LeuSerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleG 285837 : {G}CTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTG : 285893 143 : lyArgArgLeuValValIleCysAlaPhePheMetTyrGlyGlyAlaValPheTyrTy : 161 ||||| !|||!.!:!!.!!|||||| !|||||||||..!|||!.! !!|||||| lyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrTh 285894 : GACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACAC : 285950 162 : rLeuAlaLeuProPheSerLysGlyThrIleThrGluAspAspAspAsnLeuThrTyr : 180 ! !!.!:!!|||!!.!!!! ! ..! !|||||| ! !|||||| !||| rThrValMetProLeuCysThr---ValArgThrGluIleIleAspAsnGluThrVal 285951 : CACGGTGATGCCGTTGTGCACA---GTACGCACGGAGATCATCGACAACGAGACCGTG : 286004 181 : ArgProLeuValTyrProValAlaArgValIleValAspAlaArgHisSerProIleS : 200 ||| !!! !!.!!:!|||:!! !|||! !:!!:!!||| !!||| !|||||| ! ArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerP 286005 : AGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGT : 286064 201 : erGluIlePhePheTrpValGlnCysLeuSerGlyPheValAlaHisSerIleThrTh : 219 !|||||| ! !:::!!|||||||||:!!!.!|||||| !:!!|||:!!|||.. heGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrVa 286065 : TCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGT : 286121 220 : rGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAlaTyrGlyArgMetGluIle : 238 !|||||||||||||||||||||||||||!.!||||||!.!! !|||!:!.!...!||| lGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIle 286122 : TGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATA : 286178 239 : LeuIleGlnTrpIleGluHisLeuValAspGlyArgGluAspLeuCysGly<-><->S : 256 |||:!: ! !:!:!!: ! |||||||||||| !:!!! ! ||| ! LeuValThrLysLeuAspLysLeuValAspGlyValLysGlyArgLysGlyLeuSerT 286179 : CTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCA : 286238 257 : erValAspAsnArgLeuAlaMetIleValHisGlnHisValAlaIleLeu{Ar} >> : 273 !! !!!:.!.||||||!.! |||:!!.!.!!.|||:!! !||||||{ !} hrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 286239 : CGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt.. : 286293 274 : >> Target Intron 2 >>>> {g}PheIleAlaLeuIleAspAsnIleLeuArg : 283 408 bp {!}||||||:!!! !|||!!:...:!!|||!.! ++{y}PheIleSerGlnIleGluGlyLeuLeuAsn 286294 : .......................ag{T}TTTATATCGCAAATCGAGGGGCTCCTAAAC : 286727 284 : GluIleSerValValGluIleAlaGlyCysThrLeuAsnMetCysPheLeuGlyTyrT : 303 ||||||!!! !!||||||:!: !|||||||||||||||!!:|||||||||||||||| GluIleCysPheValGluValIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrT 286728 : GAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGGGATATT : 286787 304 : yrThrIleThr >>>> Target Intron 3 >>>> GluTrpGlySerGlnGlu : 312 || !:!:||| 80 bp ||||||! !..!...||| yrLeuLeuThr++ ++GluTrpGluGlnSerGlu 286788 : ATTTACTGACGgt.........................agGAATGGGAGCAAAGTGAA : 286894 313 : ProAlaThrTyrValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheI : 332 !! ! ! :!!|||||| !! ||||||:!!|||!!!|||||||||:!!|||| ThrIleGlyThrIleThrTyrCysThrLeuLeuValSerPheThrPheAsnValPheI 286895 : ACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCA : 286954 333 : lePheCysTyrIleGlyGluLeuValThrGluGln >>>> Target Intron 4 : 344 ||.!!|||||||||||||||:!!:!!:!!|||||| 74 bp leLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286955 : TACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt..................... : 286992 345 : >>>> CysLysLysIleGlyGluValSerHisMetIleAspTrpTyrArgLeuProG : 361 ||| !|||:!!||| ! !!!!:!!||||||||||||||||||||||||! ++CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProG 286993 : ....agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAG : 287115 362 : luLysLysGlyLeuAlaLeuIleLeuIleIleAlaMetSerAsnSerSerPheLysLe : 380 !|||! !!.!! !!.!||||||||||||.!!|||:!!||||||||||||.!.||||| lyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLe 287116 : GAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATT : 287172 381 : uThrAlaAlaAsnLeuPheGluLeuSerLeuSerThrPheGlyAsp >>>> Targe : 396 |||||||!.!!!.:!!.!!!!:||||||||||||!:!||| !!..! uThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSer++ 287173 : AACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt.......... : 287222 397 : t Intron 5 >>>> ValValArgThrSerValAlaTyrLeuAsnMetLeuArgTh : 409 71 bp |||:!!!:!:!!:!! !!|||||||||!:!:!:|||||||| ++ValLeuLysSerAlaPheAlaTyrLeuSerLeuLeuArgTh 287223 : ...............agGTGTTGAAATCGGCATTCGCATATCTGAGCTTATTACGTAC : 287330 410 : rLeuThrSer : 412 |||||||!!! rLeuThrThr 287331 : GCTAACCACA : 287341 vulgar: CbirOr15 18 412 . KQ414889.1 284508 287341 + 781 M 67 201 G 0 3 M 37 111 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 45 135 G 1 0 M 86 258 G 0 6 M 17 51 S 0 2 5 0 2 I 0 404 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284509 287341 781 + . gene_id 3 ; sequence CbirOr15 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284509 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284509 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286698 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 4 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 3 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287220 287221 . + . intron_id 5 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 287220 287290 . + . intron_id 5 KQ414889.1 exonerate:protein2genome:local splice3 287289 287290 . + . intron_id 4 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 287291 287341 . + . KQ414889.1 exonerate:protein2genome:local exon 287291 287341 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284509 287341 781 + . alignment_id 3 ; Query CbirOr15 ; Align 284509 19 201 ; Align 284713 86 111 ; Align 285839 124 135 ; Align 285974 170 258 ; Align 286238 256 51 ; Align 286700 274 99 ; Align 286879 307 111 ; Align 287064 344 156 ; Align 287291 396 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 772 Query range: 20 -> 412 Target range: 278567 -> 280554 21 : AspMetArgLeuSerIleGlnLeuAsnArgTrpLeuLeuGlnProLeuGlyAlaTrpP : 40 ||| !! !! !|||:!!|||:!!|||||||||!!!|||:!!|||:!!|||!.!|||| AspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpP 278568 : GATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGC : 278625 41 : roArgSerAlaGlyIleSerSerMetGluArgTyrThrTyrThrLeuValAsnValIl : 59 ||! !||| ! !!:!:!!!!!!:!!|||!:! !!:!! !..!:!!:!! :!!|| roLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIl 278626 : CTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAAT : 278682 60 : eCysThrGlyLeuIleGlyPheIleLeuValProThrValValTyrMetThrLeuGlu : 78 | !! ! !||||||||||||:!!||||||||| !!.!:!!! !! ..!|||!!: eSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAsp 278683 : CAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGAC : 278739 79 : IleGluAspThrTyrAsnThr<->LeuLysLeuSerGlyProValSerPhePheValM : 97 ! ! ! ! ! !:!!||| :!!|||:!!! !||||||:!!||||||! !..!| LysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrM 278740 : AAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGA : 278799 98 : etAlaIleIleLysTyrSerSerLeuIlePheArgGluAsnAspIleArgLysGlyIl : 116 |||||! |||||||||! !! !|||!!:! |||! ..! ! ||| !!||| !!:! etAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysVa 278800 : TGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGT : 278856 117 : eLysTyrIleGluAsnAspTrp<-><-><->MetAsnThrArgTyrGlnAsnAspArg : 132 :!!. !!|||...!..|||||| :!:::: !||| :::...:::||| lAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArg 278857 : GAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagaga : 278913 133 : IleIleMetIleLysSerAlaLysPheGlyArgArgLeuValValIleCysAlaPheP : 152 ||||||! ! ||||||!:!.!!|||||| !|||!.!:!!.!! !!||| !| GluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyP 278914 : gagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTT : 278973 153 : heMetTyrGlyGlyAlaValPheTyrTyrLeuAlaLeuProPheSerLysGlyThrIl : 171 ||||||||..!|||!.!||||||||| ! !!.!:!!|||!!.! ! !.!..! heMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPhe---AlaValAr 278974 : TCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTC---GCAGTACG : 279027 172 : eThrGluAspAspAspAsnLeuThrTyrArgProLeuValTyrProValAlaArgVal : 190 !|||||| ! !|||||| !||| ||| !!! !!.!!:!|||:!! !|||! ! gThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGly 279028 : CACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGC : 279084 191 : IleValAspAlaArgHisSerProIleSerGluIlePhePheTrpValGlnCysLeuS : 210 :!!:!!||| !!||| !|||||| ! !|||||| ! !:::!!|||||||||: LeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuA 279085 : CTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGG : 279144 211 : erGlyPheValAlaHisSerIleThrThrGlyAlaCysSerLeuAlaAlaValPheAl : 229 !!!.!|||||| !:!!|||:!!|||..!||||||||||||||| !|||||||||!. laAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheVa 279145 : CCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGT : 279201 230 : aMetHisAlaTyrGlyArgMetGluIleLeuIleGlnTrpIleGluHisLeuValAsp : 248 !||||||!.!! !|||!:!.!...!||||||:!: ! !:!:!!: ! |||:!!||| lMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAsp 279202 : CATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGAC : 279258 249 : Gly<-><->ArgGluAspLeuCysGlySerValAspAsnArgLeuAlaMetIleValH : 266 ||| !!..! ! !! .!!!!! !!!:.!.||||||!.! |||:!!. GlyValLysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleG 279259 : GGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCG : 279318 267 : isGlnHisValAlaIleLeu{Ar} >>>> Target Intron 1 >>>> {g}Ph : 274 !.!!.|||:!! !||||||{ !} 571 bp {!}|| luHisHisLeuLysIleLeu{Gl}++ ++{y}Ph 279319 : AGCATCATCTGAAGATACTG{GG}gt.........................ag{T}TT : 279913 275 : eIleAlaLeuIleAspAsnIleLeuArgGluIleSerValValGluIleAlaGlyCys : 293 ||||:!!! !|||!!:...:!!|||!.!||||||!!! !!||||||:!: !|||||| eIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCys 279914 : TATATCGCAAATCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTGATTGGTTGC : 279970 294 : ThrLeuAsnMetCysPheLeuGlyTyrTyrThrIleThr >>>> Target Intro : 307 |||||||||!!:||||||||| !|||||| !:!!||| 80 bp ThrLeuAsnIleCysPheLeuThrTyrTyrLeuLeuThr++ 279971 : ACGTTGAACATATGCTTTTTGACATATTATTTACTCACGgt................. : 280014 308 : n 2 >>>> GluTrpGlySerGlnGluProAlaThrTyrValThrTyrIleIleLeu : 322 ||||||! !..!.!.!!: !! ! ! !!||||||:!!!!:!!! ++GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPhe 280015 : ........agGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTT : 280137 323 : LeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValThrG : 342 |||||||||||||||||||||:!!||||||.!!|||||||||||||||:!!:!!:!!| LeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerG 280138 : CTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCG : 280197 343 : luGln >>>> Target Intron 3 >>>> CysLysLysIleGlyGluValSer : 351 ||||| 74 bp ||| !|||:!!|||! ! !!!! luGln++ ++CysLeuLysValGlyValSerThr 280198 : AACaggt.........................agTGCTTAAAAGTCGGCGTGTCAACT : 280298 352 : HisMetIleAspTrpTyrArgLeuProGluLysLysGlyLeuAlaLeuIleLeuIleI : 371 :!!||||||||||||||||||||||||! !||||||!.!! !!.!||||||||||||. TyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIleP 280299 : TACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATAT : 280358 372 : leAlaMetSerAsnSerSerPheLysLeuThrAlaAlaAsnLeuPheGluLeuSerLe : 390 !!|||:!!||||||||||||.!.||||||||||||!.!!!.:!!.!!!!:|||||||| heAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLe 280359 : TCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTT : 280415 391 : uSerThrPheGlyAsp >>>> Target Intron 4 >>>> ValValArgThrS : 400 ||||!:!||| !!..! 71 bp |||:!!!:!|||: uSerSerPheCysSer++ ++ValLeuLysThrA 280416 : AAGCAGCTTCTGCAGCgt.........................agGTGTTAAAAACGG : 280516 401 : erValAlaTyrLeuAsnMetLeuArgThrLeuThrSer : 412 !! !!|||||||||!:!:!:|||||||||||||||!!! laPheAlaTyrLeuSerLeuLeuArgThrLeuThrThr 280517 : CATTCGCATATCTGAGCTTATTACGTACGCTTACCACA : 280554 vulgar: CbirOr15 20 412 . KQ414889.1 278567 280554 + 772 M 65 195 G 0 3 M 38 114 G 0 9 M 44 132 G 1 0 M 81 243 G 0 6 M 23 69 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278568 280554 772 + . gene_id 4 ; sequence CbirOr15 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278568 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278568 279340 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280554 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280554 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278568 280554 772 + . alignment_id 4 ; Query CbirOr15 ; Align 278568 21 195 ; Align 278766 86 114 ; Align 278889 124 132 ; Align 279021 169 243 ; Align 279270 250 69 ; Align 279913 274 99 ; Align 280092 307 111 ; Align 280277 344 156 ; Align 280504 396 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 732 Query range: 0 -> 275 Target range: 217105 -> 217930 1 : MetGlnGlyAspProIleGlnLysThrAsnSerValGluLeuValHisAspHisGluG : 20 |||||| ! ! !!! !.!.||| !.!.||| !..! !! !:!!!!::::|||: MetGlnLysLeuAlaThrAsnLysGluGlnSerProArgThrAspTyrGluTyrGluL 217106 : ATGCAAAAACTTGCAACAAACAAGGAACAATCCCCCAGAACCGACTACGAgtacgaga : 217163 21 : luAspMetArgLeuSerIleGlnLeuAsnArgTrpLeuLeuGlnProLeuGlyAlaTr : 39 ::::::::...||||||||||||! !|||||||||||||||:!!|||:!!||| !|| ysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTr 217164 : aaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTG : 217220 40 : pProArgSerAlaGlyIleSerSerMetGluArgTyrThrTyrThrLeuValAsnVal : 58 ||||!.!||| ! !! !!!!!!! ..!!:! ! !|||! !|||:!!|||!.! pProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAla 217221 : GCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCC : 217277 59 : IleCysThrGlyLeuIleGlyPheIleLeuValProThrValValTyrMetThrLeuG : 78 :!!||| !|||||||||.!!|||:!!!!!|||||| ! !:!!|||:!! !|||| LeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeuG 217278 : TTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCG : 217337 79 : luIleGluAspThrTyrAsnThrLeuLysLeuSerGlyProValSerPhePheValMe : 97 ||:!!|||||| !|||:!!! !|||||||||! !||||||:!!! !|||! !||||| luValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValMe 217338 : AAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGAT : 217394 98 : tAlaIleIleLysTyrSerSerLeuIlePheArgGluAsnAspIleArgLysGlyIle : 116 ||||.!!:!!||||||! !||||||||| !!!.!:!! |||||||||:!! !!:!: tAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCysVal 217395 : GGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTG : 217451 117 : LysTyrIleGluAsnAspTrpMetAsnThrArgTyrGlnAsnAspArgIleIleMetI : 136 !:! ||||||...||||||! !|||..!|||! !:!!!!.|||||| |||| ArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArgGluAlaMetI 217452 : AGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGA : 217511 137 : leLysSerAlaLysPheGlyArgArgLeuValValIleCysAlaPhePheMetTyrGl : 155 || !!:!|||!!.|||||||||!:!||||||:!!:!!|||.!!||||||||||||.! leValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrSe 217512 : TAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAG : 217568 156 : yGlyAlaValPheTyrTyrLeuAlaLeuProPheSerLysGlyThrIleThrGluAsp : 174 !||| ||||||||||||::!|||:!!|||.!!||| !|||! !||| !..!!!: rGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGlu 217569 : CggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAG : 217625 175 : AspAspAsnLeuThrTyrArgProLeuValTyrProValAlaArgValIleValAspA : 194 :!!! |||||||||!:!! !|||||||||!:!||| !!.!!!:! !|||:!!|||. AsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyrIleIleAspT 217626 : AATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATA : 217685 195 : laArgHisSerProIleSerGluIlePhePheTrpValGlnCysLeuSerGlyPheVa : 213 !!|||:!!!!!|||! !:!|||||| ! |||!:::!!|||! :!!:!!||| !:! hrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLe 217686 : CTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTT : 217742 214 : lAlaHisSerIleThrThrGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAla : 232 ! !|||.!!||||||:!!!.!||||||||||||||||||!.!||||||:!:|||||| uMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAla 217743 : GATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCC : 217799 233 : TyrGlyArgMetGluIleLeuIleGlnTrpIleGluHisLeuValAspGlyArgGluA : 252 ! !|||!:!!!:|||:!:|||!!:.!.|||:!::!!||||||:!!|||||||||! !| CysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgAlaA 217800 : TGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGAGCGG : 217859 253 : spLeuCysGlySerValAspAsnArgLeuAlaMetIleValHisGlnHisValAlaIl : 271 ||:!! !!! !!!!||||||..!|||:!!|||! |||||| !||||||||| !|| spMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnHisValArgIl 217860 : ATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGAT : 217916 272 : eLeuArgPheIle : 275 ||||!:!! !:!! eLeuLysCysVal 217917 : ATTAAAGTGTGTA : 217930 vulgar: CbirOr15 0 275 . KQ414889.1 217105 217930 + 732 M 275 825 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217106 217930 732 + . gene_id 5 ; sequence CbirOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217106 217930 . + . KQ414889.1 exonerate:protein2genome:local exon 217106 217930 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217106 217930 732 + . alignment_id 5 ; Query CbirOr15 ; Align 217106 1 825 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 677 Query range: 17 -> 277 Target range: 212854 -> 213634 18 : HisGluGluAspMetArgLeuSerIleGlnLeuAsnArgTrpLeuLeuGlnProLeuG : 37 :!!|||:!! :::...||||||||| !! !|||||||||||||||:!!||| !| TyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrG 212855 : TACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGG : 212912 38 : lyAlaTrpProArgSerAlaGlyIleSerSerMetGluArgTyrThrTyrThrLeuVa : 56 || !|||||| !!.!:!! !:!!||| !!!!:|||!:! !!! ! ! !||||| lyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIleAlaArgLeuVa 212913 : GTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGT : 212969 57 : lAsnValIleCysThrGlyLeuIleGlyPheIleLeuValProThrValValTyrMet : 75 ||||..!:!!||| !||||||||||||!:!:!!:!!:!!||| ! !:!!|||:!! lAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrVal 212970 : CAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTG : 213026 76 : ThrLeuGluIleGluAspThrTyrAsnThrLeuLysLeuSerGlyProValSerPheP : 95 !|||!!::!!|||::: :::... :!!:!!|||! !||| ! !!:!!|||! PheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheC 213027 : TTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTT : 213086 96 : heValMetAlaIleIleLysTyrSerSerLeuIlePheArgGluAsnAspIleArgLy : 114 !||| |||:!: |||||| !|||||||||.!!!.!! :!!|||||||||! ysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgTh 213087 : GCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTAC : 213143 115 : sGlyIleLysTyrIleGluAsnAspTrpMetAsnThrArgTyrGlnAsnAspArgIle : 133 ! !!:!!:!!:!!!!::!! !!||||||! !|||! !! !:!!:!!.!.|||!:! ! rCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGlu 213144 : GTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAA : 213200 134 : IleMetIleLysSerAlaLysPheGlyArgArgLeuValValIleCysAlaPhePheM : 153 |||||| !!:!|||!..||||||!:!|||:!!|||..!|||||||||||||||| IleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPhePheM 213201 : ATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCA : 213260 154 : etTyrGlyGlyAlaValPheTyrTyrLeuAlaLeuProPheSerLysGlyThrIleTh : 172 ||||| !||| !..!||||||!:!|||!.!:!!|||.!!||| !! !! !!!:.. etTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLysMetVa 213261 : TGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGT : 213317 173 : rGluAspAspAspAsnLeuThrTyrArgProLeuValTyrProValAlaArgValIle : 191 !! !!!:||| !|||:!!|||!:!|||! !:!!||| !||||||:!!||| !!||| lAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSerArgPheIle 213318 : AGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATC : 213374 192 : ValAspAlaArgHisSerProIleSerGluIlePhePheTrpValGlnCysLeuSerG : 211 ||||||!.!|||:!!||||||:!:!:!||||||||||||! !:!!||| !:!!:!!| ValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleIleAlaG 213375 : GTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTG : 213434 212 : lyPheValAlaHisSerIleThrThrGlyAlaCysSerLeuAlaAlaValPheAlaMe : 230 || ! :!! !|||:!!|||.!!..!! !|||||||||||||||||||||||||||:! lyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPheAlaVa 213435 : GAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGT : 213491 231 : tHisAlaTyrGlyArgMetGluIleLeuIleGlnTrpIleGluHisLeuValAspGly : 249 :||||||! !|||!:!|||! ||||||!!:...|||:!:|||||||||:!!|||||| lHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGly 213492 : TCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGT : 213548 250 : ArgGluAspLeuCysGlySerValAspAsnArgLeuAlaMetIleValHisGlnHisV : 269 |||||||||:!! !! !!:!||||||:!!|||:!!|||:!:||||||:!!||||||| ArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleValAsnGlnHisV 213549 : AGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATG : 213608 270 : alAlaIleLeuArgPheIleAlaLeu : 277 || !||||||!:!!:::!:! !||| alArgIleLeuLysTrpValGluLeu 213609 : TGCGGATACTGAAGTGGGTGGAATTG : 213634 vulgar: CbirOr15 17 277 . KQ414889.1 212854 213634 + 677 M 260 780 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212855 213634 677 + . gene_id 6 ; sequence CbirOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212855 213634 . + . KQ414889.1 exonerate:protein2genome:local exon 212855 213634 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212855 213634 677 + . alignment_id 6 ; Query CbirOr15 ; Align 212855 18 780 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 668 Query range: 10 -> 284 Target range: 226891 -> 227713 11 : SerValGluLeuValHisAspHisGluGluAspMetArgLeuSerIleGlnLeuAsnA : 30 |||:!!! ! !! !:!!|||:!!:!!||| !!:!!!.!||||||||||||||||||| SerLeuAlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnA 226892 : TCTCTCGCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATC : 226949 31 : rgTrpLeuLeuGlnProLeuGlyAlaTrpProArgSerAlaGlyIleSerSerMetGl : 49 |||||||||||:!!||||||||| !|||||| !||| ! !! !||| !!!!:! rgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGl 226950 : GTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGG : 227006 50 : uArgTyrThrTyrThrLeuValAsnValIleCysThrGlyLeuIleGlyPheIleLeu : 68 !|||! ! !! ! !|||:!!..! !!:!!||| !!.!|||!!:.!!||| ||| yArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeu 227007 : AAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTG : 227063 69 : ValProThrValValTyrMetThrLeuGluIleGluAspThrTyrAsnThrLeuLysL : 88 ||| !!!:!! !:!!|||:!!..!||||||:!::!!! !.!!|||||||||||||||: ValSerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysM 227064 : GTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAA : 227123 89 : euSerGlyProValSerPhePheValMetAlaIleIleLysTyrSerSerLeuIlePh : 107 !!! !||||||:!!|||||||||!.!|||:!!:!!:!!|||||||||! !|||! || etIleGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPh 227124 : TGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTT : 227180 108 : eArgGluAsnAspIleArgLysGlyIleLysTyrIleGluAsnAspTrpMetAsnThr : 126 |!.!|||:!!||||||! !:!! !!:!!:!! |||:!! ||||||! !|||! ! eHisGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIle 227181 : CCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATC : 227237 127 : ArgTyrGlnAsnAspArgIleIleMetIleLysSerAlaLysPheGlyArgArgLeuV : 146 ||||||! !.!.||||||! !:!:|||:!:! !! !||| ! !:!||||||!:!|||: ArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuI 227238 : AGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGA : 227297 147 : alValIleCysAlaPhePheMetTyrGlyGlyAlaValPheTyrTyrLeuAlaLeuPr : 165 !!..!||||||.!!||||||:!:!:!...... ||||||:::|||:!!!.!:!!|| leThrIleCysThrPhePheValPheSerSerPheValPhePheTyrIleValValPr 227298 : TCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACC : 227354 166 : oPheSerLysGlyThrIleThrGluAspAspAspAsnLeuThrTyrArgProLeuVal : 184 |.!!!:! |||!:!:!!.!! !!!:|||! |||! !!:!|||! !! !:!! ! oIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetPro 227355 : TATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCG : 227411 185 : TyrProValAlaArgValIleValAspAlaArgHisSerProIleSerGluIlePheP : 204 !:!||| !! !!!:!:!!|||!.!|||!.!|||:!!||||||.!!!:!|||||||||| PheProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIlePheP 227412 : TTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCT : 227471 205 : heTrpValGlnCysLeuSerGlyPheValAlaHisSerIleThrThrGlyAlaCysSe : 223 ||! !||||||! !:!!!!!|||.!!||| !|||.!!:!!|||:!!!.!|||||||| heSerValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSe 227472 : TTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAG : 227528 224 : rLeuAlaAlaValPheAlaMetHisAlaTyrGlyArgMetGluIleLeuIleGlnTrp : 242 |:!!||||||:!!.!!|||:!:||||||! !|||!:!||||||:!:|||:!:...||| rMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrp 227529 : TATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGG : 227585 243 : IleGluHisLeuValAspGlyArgGluAspLeuCysGlySerValAspAsnArgLeuA : 262 :!:! !||||||:!!|||||||||! !|||:!! !! !!!!:!!|||:!!|||:!!| LeuGlyHisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAspAspArgIleA 227586 : CTGGGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCG : 227645 263 : laMetIleValHisGlnHisValAlaIleLeuArgPheIleAlaLeuIleAspAsnIl : 281 ||! |||||| !!!.|||||| !||||||!:!! !:!!.!!! !||| !! :! laSerIleValThrHisHisValArgIleLeuLysCysValThrCysIleTyrLeuLe 227646 : CTAGCATCGTCACTCACCACGTTCGAATATTGAAGTGTGTAACGTGTATCTATTTGTT : 227702 282 : eLeuArgGlu : 284 :! !|||!!: uTyrArgAsp 227703 : GTATCGTGAT : 227713 vulgar: CbirOr15 10 284 . KQ414889.1 226891 227713 + 668 M 274 822 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226892 227713 668 + . gene_id 7 ; sequence CbirOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226892 227713 . + . KQ414889.1 exonerate:protein2genome:local exon 226892 227713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226892 227713 668 + . alignment_id 7 ; Query CbirOr15 ; Align 226892 11 822 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 639 Query range: 24 -> 411 Target range: 256655 -> 258738 25 : SerIleGlnLeuAsnArgTrpLeuLeuGlnProLeuGlyAlaTrpProArgSerAlaG : 44 |||:!!|||||||||||||||!!!|||:!!|||:!!||||||||||||! !|||:!!. SerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerS 256656 : AGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGT : 256713 45 : lyIleSerSerMetGluArgTyrThrTyrThrLeuValAsnValIleCysThrGlyLe : 63 .!! !!!!!!!:!:|||||| !!..!! ! !:!!:!!|||:!!:!!||| !|||! erThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySe 256714 : CCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTC : 256770 64 : uIleGlyPheIleLeuValProThrValValTyrMetThrLeuGluIleGluAspThr : 82 !||| !|||! !|||:!!||| !:!!:!!:!!:!: !|||!!: !!!:..! ! rIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPhe 256771 : TATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTC : 256827 83 : TyrAsnThrLeuLysLeuSerGlyProValSerPhePheValMetAlaIleIleLysT : 102 ||| :::||| ||||||:!!||| !!:::!!!!:::! ! !!!.| TyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnT 256828 : TAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATT : 256887 103 : yrSerSerLeuIlePheArgGluAsnAspIleArgLysGlyIleLysTyrIleGluAs : 121 ||!!!! !|||:!:!!.!:!! !!!.||||||||| ! !!:!!:!!:!!||||||!. yrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluTh 256888 : ACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAAC : 256944 122 : nAspTrpMetAsnThrArgTyrGlnAsnAspArgIleIleMetIleLysSerAlaLys : 140 .||||||! ! ..!||| :!!!!.|||!:! !:!:|||!!:|||!:!|||!:! rAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArg 256945 : GGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGA : 257001 141 : PheGlyArgArgLeuValValIleCysAlaPhePheMetTyrGlyGlyAlaValPheT : 160 ||||||||| !:!!!.!..!.!!|||||| !.!!||| ! .!!|||... : PheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysP 257002 : TTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtt : 257061 161 : yrTyrLeuAlaLeuProPheSerLysGlyThrIleThrGluAspAspAspAsnLeuTh : 179 :::::::!:!!! ! !!.!.!:!! !! !! !||| !! !! :!!!!:!.. !! hePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIl 257062 : tcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGAT : 257118 180 : rTyrArgProLeuValTyrProValAlaArgValIleValAspAlaArgHisSerPro : 198 ! ||| !||| ! ! !!||| !!:! !:!::!!:!!!.! !!!.|||||| eValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerPro 257119 : CGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCT : 257175 199 : IleSerGluIlePhePheTrpValGlnCysLeuSerGlyPheValAlaHisSerIleT : 218 ! !:!|||||| ! !!!:::!!||| !! !|||..!.!!:!!||| !!!!! !| ThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerT 257176 : ACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTA : 257235 219 : hrThrGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAlaTyrGlyArgMetGl : 237 ||..!.!! !! !|||||||||||||||||||||! ||||||||||||!:!:!! hrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuTh 257236 : CAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGAC : 257292 238 : uIleLeuIleGlnTrpIleGluHisLeuVal<->AspGlyArgGluAspLeuCysGly : 255 :!:|||!!:..!|||||| !.!.!!!||| !!:..!|||.!. rValLeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThr 257293 : TGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacg : 257349 256 : SerValAspAsnArgLeuAlaMetIleValHisGlnHisValAlaIleLeu{Ar} > : 273 !!!.!:!:!!!.!:!!||||||.!.!!.|||:!! !:!:|||{||} PheProPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Ar}++ 257350 : tttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt. : 257407 274 : >>> Target Intron 1 >>>> {g}PheIleAlaLeuIleAspAsnIleLeuAr : 283 760 bp {|}! !:!! !! ! !:!! :!:! !!: +-{g}CysValMetTyrArgAsnLeuLeuGlnGl 257408 : ........................ac{G}TGCGTTATGTACCGAAACCTGTTGCAACA : 258193 284 : gGluIleSerValValGluIleAlaGlyCysThrLeuAsnMetCysPheLeuGlyTyr : 302 !.!. !! ! ! ! ! !..!! ! !!:!!:!!! ::: ::: nAsnGly***AsnArgThrTyrAsnAsnPheProIleHisSerTyrSerValIlePhe 258194 : AAATGGTTAAAATCGTACCTACAATAATTTTCCTATACACAGctattctgttattttt : 258250 303 : TyrThrIleThrGluTrpGlySerGlnGluProAlaThrTyrValThrTyrIleIleL : 322 ||| ... ||||||..!!!!|||::: ... :::|||.!!!!:: TyrTyrPheGlnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheMetI 258251 : tattattttcaggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTATGA : 258310 323 : euLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValTh : 341 !!||||||||||||:::||||||||||||:::...|||||||||||||||:!!:!!|| leLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLeuTh 258311 : TACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATTAAC : 258367 342 : rGluGln >>>> Target Intron 2 >>>> CysLysLysIleGlyGluValS : 351 ||||||| 90 bp |||||||||:!!|||!!:||| rGluGln++ ++CysLysLysValGlyAspValV 258368 : AGAACAGgt.........................agTGCAAGAAAGTTGGCGACGTGG : 258487 352 : erHisMetIleAspTrpTyrArgLeuProGluLysLysGlyLeuAlaLeuIleLeuIl : 370 !:!!|||! !||||||||| !||||||!!:|||!:! !|||! !|||||||||:! alTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLeuVa 258488 : TTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTTGGT : 258544 371 : eIleAlaMetSerAsnSerSerPheLysLeuThrAlaAlaAsnLeuPheGluLeuSer : 389 !|||||| |||!:! ! ! !!:!!:!!||||||.........|||...::!||| lIleAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePheHisMetSer 258545 : AATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatGTCC : 258601 390 : LeuSerThrPheGlyAsp >>>> Target Intron 3 >>>> ValValArgTh : 399 :!!! !||||||.!!||| 69 bp |||:!!!:!|| IleTyrThrPheSerAsp++ ++ValIleLysTh 258602 : ATTTACACATTCAGCGATgt.........................agGTAATAAAAAC : 258700 400 : rSerValAlaTyrLeuAsnMetLeuArgThrLeuThr : 411 |||| !!||||||||||||:!:|||||| !:!!:!! rSerPheAlaTyrLeuAsnLeuLeuArgGlnValSer 258701 : CTCTTTCGCGTATTTGAATTTACTGCGTCAAGTATCG : 258738 vulgar: CbirOr15 24 411 . KQ414889.1 256655 258738 + 639 M 223 669 G 0 3 M 25 75 S 0 2 5 0 2 I 0 756 3 0 2 S 1 1 M 70 210 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256656 258738 639 + . gene_id 8 ; sequence CbirOr15 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256656 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256656 257404 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 258164 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258163 258164 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 258165 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258165 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256656 258738 639 + . alignment_id 8 ; Query CbirOr15 ; Align 256656 25 669 ; Align 257328 248 75 ; Align 258166 274 210 ; Align 258466 344 156 ; Align 258691 396 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 418 Query range: 19 -> 277 Target range: 232447 -> 233221 20 : GluAspMetArgLeuSerIleGlnLeuAsnArgTrpLeuLeuGlnProLeuGlyAlaT : 39 ..!||| ..!! !|||||||||:!!|||||||||!!!||| !|||:!!||||||| ArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaT 232448 : CGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCAT : 232505 40 : rpProArgSerAlaGlyIleSerSerMetGluArgTyrThrTyrThrLeuValAsnVa : 58 |||||||| !.!!! !! !|||!!! :!!!:! ! ! !|||:!!!..:! rpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLe 232506 : GGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACT : 232562 59 : lIleCysThrGlyLeuIleGlyPheIleLeuValProThrValValTyrMetThrLeu : 77 !! !||| !..!|||!!: !! ! :!!|||||| !:!!:!!!:!!!: !!!! uThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPhe 232563 : CACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTC : 232619 78 : GluIleGluAspThrTyrAsnThrLeuLysLeuSerGlyProValSerPhePheValM : 97 ||| ! !..! ! ! .!.! !:!!|||! !! !||||||:!!||| !|||:!!| GluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuM 232620 : GAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGA : 232679 98 : etAlaIleIleLysTyrSerSerLeuIlePheArgGluAsnAspIleArgLysGlyIl : 116 ||!.! !:!:!!.|||!!!!!!|||:!: !:!! !|||||||||! ! ! !!:! etGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysVa 232680 : TGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGT : 232736 117 : eLysTyrIleGluAsnAspTrpMetAsnThrArgTyrGlnAsnAspArgIleIleMet : 135 ::!! ! :!::!!.!.|||||| |||..!!:! ! ! ! !!||| !:!:||| lGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMet 232737 : GGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATG : 232793 136 : IleLysSerAlaLysPheGlyArgArgLeuValValIleCysAlaPhePheMetTyrG : 155 :!:|||!:!||||||.!!|||||| !:!!!.! !|||..!||||||! !|||:!! LeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisT 232794 : TTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACA : 232853 156 : lyGlyAlaValPheTyrTyrLeuAlaLeuProPheSerLysGlyThrIleThrGluAs : 174 !|||!.!! !! ! !! ! :!!!.! ! !.!! !!! !.!!|||.!! !! !! hrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGl 232854 : CCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGG : 232910 175 : pAspAspAsnLeuThrTyrArgProLeuValTyrProValAlaArgValIleValAsp : 193 :!!!!:!:!! !:!! !|||||| !! ! !! !! !! ! !:!::!!||| yAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAsp 232911 : GAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGAC : 232967 194 : AlaArgHisSerProIleSerGluIlePhePheTrpValGlnCysLeuSerGlyPheV : 213 .!!||| !||||||! !:!||||||.!.||| :!!||||||||||||||||||: ThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheI 232968 : ACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCA : 233027 214 : alAlaHisSerIleThrThrGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAl : 232 !!!.!:!!|||:!!|||..!|||||||||.!!|||!.!||||||.!.||||||||||| leValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAl 233028 : TCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGC : 233084 233 : aTyrGlyArgMetGluIleLeuIleGlnTrpIleGluHisLeuValAspGlyArgGlu : 251 |! !|||!:!:!!.!.:!::!!!!:..! :!:!!: !!|||||||||!.!!:!! ! aCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGly 233085 : GTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGG : 233141 252 : AspLeuCysGlySerValAspAsnArgLeuAlaMetIleValHisGlnHisValAlaI : 271 .!. ! !! !!.!.!.!..!:!|||!.!.!.||||||.!.!!.|||:!! !! GlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgT 233142 : CAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTA : 233201 272 : leLeuArgPheIleAlaLeu : 277 !||||||!:!:!::!!:!! hrLeuArgTyrLeuSerVal 233202 : CATTAAGGTATTTGTCTGTG : 233221 vulgar: CbirOr15 19 277 . KQ414889.1 232447 233221 + 418 M 258 774 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232448 233221 418 + . gene_id 9 ; sequence CbirOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232448 233221 . + . KQ414889.1 exonerate:protein2genome:local exon 232448 233221 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232448 233221 418 + . alignment_id 9 ; Query CbirOr15 ; Align 232448 20 774 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 417 Query range: 24 -> 273 Target range: 262852 -> 263602 25 : SerIleGlnLeuAsnArgTrpLeuLeuGlnProLeuGlyAlaTrpProArgSerAlaG : 44 |||:!:|||:!!|||||||||||||||:!!|||:!!||||||||||||! !||||||. SerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerAlaS 262853 : AGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCGCCT : 262910 45 : lyIleSerSerMetGluArgTyrThrTyrThrLeuValAsnValIleCysThrGlyLe : 63 .!||||||!!!||||||||| !! !!:: !|||:!!! !|||:!!||| ! !!|| erIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCysLe 262911 : CGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTGTCT : 262967 64 : uIleGlyPheIleLeuValProThrValValTyrMetThrLeuGluIleGluAspThr : 82 |||| !! !! !:!!:!!|||:!!:!!:!!:!!!!:..!|||||| !|||:!! ! uIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsnPhe 262968 : CATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAATTTC : 263024 83 : TyrAsnThrLeuLysLeuSerGlyProValSerPhePheValMetAlaIleIleLysT : 102 :!!! ! !|||:!!:!! !||||||:!!.!! !:: !!:!:!.!!!:|||!!.| HisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleAsnT 263025 : CATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCAATT : 263084 103 : yrSerSerLeuIlePheArgGluAsnAspIleArgLysGlyIleLysTyrIleGluAs : 121 ||!!!!!!|||:!:.!!!.!...!!.||||||!:! !!:!::!!:!!:!::!!.! yrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGlnGl 263085 : ACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCAGGA : 263141 122 : nAspTrpMetAsnThrArgTyrGlnAsnAspArgIleIleMetIleLysSerAlaLys : 140 .|||||| ! !..!! ! !.!.|||!:! !||||||:!:|||!:!|||||| uAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAlaLys 263142 : AGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCGAAA : 263198 141 : PheGlyArgArgLeuValValIleCysAlaPhePheMetTyrGlyGlyAlaValPheT : 160 !:!|||||| !:!!!.!!.! !||||||.!!|||||| ! !.!! !:!!! ! TyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetCysL 263199 : TACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGTGCA : 263258 161 : yrTyrLeuAlaLeuProPheSerLysGlyThrIleThrGluAspAspAspAsnLeuTh : 179 ! ! !|||!.! ! !!|||!!!! ! !..!||| !!!:! !:!!!!:!.! !! ysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrArgIl 263259 : AGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAGAAT : 263315 180 : rTyrArgProLeuValTyrProValAlaArgValIleValAspAlaArgHisSerPro : 198 ! ||| !||| !! !|||||| !!:!! !|||:!! !.! ! !:!||| eLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThrAsnPro 263316 : TCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAATCCG : 263372 199 : IleSerGluIlePhePheTrpValGlnCysLeuSerGlyPheValAlaHisSerIleT : 218 ! !:!|||||||||.!! ..!|||! !||||||||||||:!!!.! !:!!! !| ThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaThrT 263373 : ACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGACAA : 263432 219 : hrThrGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAlaTyrGlyArgMetGl : 237 ||..!||||||! !.!!:!!.!!|||||||||||| ||||||! !|||!:!:!!.! hrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLeuAs 263433 : CTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTTGAA : 263489 238 : uIleLeuIleGlnTrpIleGluHisLeuValAsp<->GlyArgGluAspLeuCysGly : 255 .:!:|||!!:...|||||| !.!.!!!|||:!! ..!|||!!:!!: ! ..! nValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLysAsn 263490 : CGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAGAAT : 263546 256 : SerValAspAsnArgLeuAlaMetIleValHisGlnHisValAlaIleLeuArg : 273 ! ! !!.!..!:!!!.!:!!||||||.!.!!.|||:!! !:!!|||||| LeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeuArg 263547 : CTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTGAGG : 263602 vulgar: CbirOr15 24 273 . KQ414889.1 262852 263602 + 417 M 224 672 G 0 3 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262853 263602 417 + . gene_id 10 ; sequence CbirOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262853 263602 . + . KQ414889.1 exonerate:protein2genome:local exon 262853 263602 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262853 263602 417 + . alignment_id 10 ; Query CbirOr15 ; Align 262853 25 672 ; Align 263528 249 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 400 Query range: 24 -> 248 Target range: 259775 -> 260447 25 : SerIleGlnLeuAsnArgTrpLeuLeuGlnProLeuGlyAlaTrpProArgSerAlaG : 44 |||:!!|||!!!|||||||||!!!|||:!!|||:!!||||||||||||! !|||:!!. SerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerS 259776 : AGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCT : 259833 45 : lyIleSerSerMetGluArgTyrThrTyrThrLeuValAsnValIleCysThrGlyLe : 63 .!! !!!!!!:!:|||!:! !! !! !..!:!!:!!! ! !!|||||| !.!! erThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerTh 259834 : CCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTAC : 259890 64 : uIleGlyPheIleLeuValProThrValValTyrMetThrLeuGluIleGluAspThr : 82 !||| ! !!! !|||:!!||| !|||:!!:!!||| !||||||! |||..! ! rIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeu 259891 : CATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTG : 259947 83 : TyrAsnThrLeuLysLeuSerGlyProValSerPhePheValMetAlaIleIleLysT : 102 |||! ! ! !|||:!! !||||||:!!!!! !!:: !!:!:!.! !|||!!.| TyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnT 259948 : TACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATT : 260007 103 : yrSerSerLeuIlePheArgGluAsnAspIleArgLysGlyIleLysTyrIleGluAs : 121 ||!!!!!!|||:!:!!.|||! !..||||||! !!.. !!:!::!!:!!:!:||||| yrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAs 260008 : ACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAA : 260064 122 : nAspTrpMetAsnThrArgTyrGlnAsnAspArgIleIleMetIleLysSerAlaLys : 140 |||||||! ! !! !! ! :!!!!.|||!:!! !:!:|||:!:!:!! !|||||| nAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLys 260065 : CGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAA : 260121 141 : PheGlyArgArgLeuValValIleCysAlaPhePheMetTyrGlyGlyAlaValPheT : 160 ||||||||| !:!!!.!!.! !|||||| !|||:!! ! ||||||!.!:!!! !! PheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysP 260122 : TTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCT : 260181 161 : yrTyrLeuAlaLeuProPheSerLysGlyThrIleThrGluAspAspAspAsnLeuTh : 179 :!! !|||!.! ! !!!.|||! !! !..!||| !! !! :!!!!:!.. !! heCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIl 260182 : TCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGAT : 260238 180 : rTyrArgProLeuValTyrProValAlaArgValIleValAspAlaArgHisSerPro : 198 ! !!.!! !||| !! ! !!||| !!:!! !:!::!!:!!!.!!.! !!|||||| eValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerPro 260239 : CGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCT : 260295 199 : IleSerGluIlePhePheTrpValGlnCysLeuSerGlyPheValAlaHisSerIleT : 218 !!:!:!|||||| !!.!! ||||||! !:!!|||||||||:!!!.!:!!|||! !| MetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerT 260296 : ATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCA : 260355 219 : hrThrGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAlaTyrGlyArgMetGl : 237 ||..!||| !! !|||||||||||||||.!..!! ||||||! !|||!:!:!!.! hrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAs 260356 : CCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAA : 260412 238 : uIleLeuIleGlnTrpIleGluHisLeuValAsp : 248 .:!:|||!!::!!|||||| !.!.!!!|||||| nValLeuMetGluTrpIleThrGluPheValAsp 260413 : CGTGCTCATGGAATGGATCACGGAGTTTGTGGAC : 260447 vulgar: CbirOr15 24 248 . KQ414889.1 259775 260447 + 400 M 224 672 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259776 260447 400 + . gene_id 11 ; sequence CbirOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259776 260447 . + . KQ414889.1 exonerate:protein2genome:local exon 259776 260447 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259776 260447 400 + . alignment_id 11 ; Query CbirOr15 ; Align 259776 25 672 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 389 Query range: 24 -> 273 Target range: 266640 -> 267390 25 : SerIleGlnLeuAsnArgTrpLeuLeuGlnProLeuGlyAlaTrpProArgSerAlaG : 44 |||:!:|||||||||||||||!!!|||:!!|||:!!||||||||||||! !! !:!! SerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerL 266641 : AGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCAC : 266698 45 : lyIleSerSerMetGluArgTyrThrTyrThrLeuValAsnValIleCysThrGlyLe : 63 !! !|||!.!:!:|||||| !..!! ! ! !:!!! !||||||||| ! !!! euThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSe 266699 : TCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTC : 266755 64 : uIleGlyPheIleLeuValProThrValValTyrMetThrLeuGluIleGluAspThr : 82 !||| !|||! !:!!:!!||| !:!! !!:!!:!:..!|||||| !|||..!! ! rIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIle 266756 : CATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATC : 266812 83 : TyrAsnThrLeuLysLeuSerGlyProValSerPhePheValMetAlaIleIleLysT : 102 !!..! !:!!|||:!!! !||||||:!!||| !!:: !!:!:!.! !|||!!.| ArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnT 266813 : CGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACT : 266872 103 : yrSerSerLeuIlePheArgGluAsnAspIleArgLysGlyIleLysTyrIleGluAs : 121 ||!!!!!!|||:!:.!.|||...!!.!!:|||||| !!:!!:!!:!!!!::!!!. yrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnTh 266873 : ACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAAC : 266929 122 : nAspTrpMetAsnThrArgTyrGlnAsnAspArgIleIleMetIleLysSerAlaLys : 140 .||||||! !! !..!! ! ! !.!.|||!:! :!:|||:!:|||!:!|||!:! rAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArg 266930 : AGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGG : 266986 141 : PheGlyArgArgLeuValValIleCysAlaPhePheMetTyrGlyGlyAlaValPheT : 160 .!!|||||| !:!!!.!:!!.!!|||||| |||||| ! !!|||!.!:!! !| IleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyT 266987 : ATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCT : 267046 161 : yrTyrLeuAlaLeuProPheSerLysGlyThrIleThrGluAspAspAspAsnLeuTh : 179 ||! !:!! ! ! !!|||!!!! ! !|||:!: !! ! !:!!!!:!.! !! yrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIl 267047 : ACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGAT : 267103 180 : rTyrArgProLeuValTyrProValAlaArgValIleValAspAlaArgHisSerPro : 198 ! !.!! !||| !! ! !!||| !!:! !!!::!!! !.! ! !|||||| eValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerPro 267104 : CGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCG : 267160 199 : IleSerGluIlePhePheTrpValGlnCysLeuSerGlyPheValAlaHisSerIleT : 218 ! !:!|||||| !!.!! !|||! !:!!|||||||||:!!!.!:!!|||! !. ThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerV 267161 : ACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCG : 267220 219 : hrThrGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAlaTyrGlyArgMetGl : 237 .!..!||||||! !||||||||||||||||||||| ||||||! !|||!:!:!!.. alValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSe 267221 : TCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAG : 267277 238 : uIleLeuIleGlnTrpIleGluHisLeuValAspGlyArgGluAspLeuCysGlySer : 256 .:!:|||!!:..!||||||:!!.!.!!!|||:!! !! !..!||| ! ! !!:! rValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsn 267278 : CGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAAC : 267334 257 : Val<->AspAsnArgLeuAlaMetIleValHisGlnHisValAlaIleLeuArg : 273 ||| !:!!!:!:!!!.!:!!:!!|||.!.!!.|||:!! !:!!|||||| ValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeuArg 267335 : GTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGAGG : 267390 vulgar: CbirOr15 24 273 . KQ414889.1 266640 267390 + 389 M 233 699 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266641 267390 389 + . gene_id 12 ; sequence CbirOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266641 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266641 267390 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266641 267390 389 + . alignment_id 12 ; Query CbirOr15 ; Align 266641 25 699 ; Align 267343 258 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 389 Query range: 24 -> 273 Target range: 274386 -> 275136 25 : SerIleGlnLeuAsnArgTrpLeuLeuGlnProLeuGlyAlaTrpProArgSerAlaG : 44 |||:!:|||||||||||||||!!!|||:!!|||:!!|||||||||||| !:!!:!! SerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaSerP 274387 : AGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGC : 274444 45 : lyIleSerSerMetGluArgTyrThrTyrThrLeuValAsnValIleCysThrGlyLe : 63 !! !!!!!.!.!.|||||| ! !! !|||::: :::||| ! !!!! roThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCysPh 274445 : CCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTGCTT : 274501 64 : uIleGlyPheIleLeuValProThrValValTyrMetThrLeuGluIleGluAspThr : 82 !||| !! !! !:!!:!!|||!:!:!! !!:!!!!:! !|||! ! !|||..! ! eIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGluSerLeu 274502 : CATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGTCTC : 274558 83 : TyrAsnThrLeuLysLeuSerGlyProValSerPhePheValMetAlaIleIleLysT : 102 :!! ! !||||||||| !||||||:!!.!! !!:: !!!!:!.! !|||!!.| HisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnT 274559 : CATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATT : 274618 103 : yrSerSerLeuIlePheArgGluAsnAspIleArgLysGlyIleLysTyrIleGluAs : 121 ||!!!!!!|||:!:.!.|||...!!.!!:|||||| !!:!::!!:!!!!::!!!. yrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnTh 274619 : ACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAAC : 274675 122 : nAspTrpMetAsnThrArgTyrGlnAsnAspArgIleIleMetIleLysSerAlaLys : 140 .||||||! !! !..!! ! ! !.!.|||!:! !:!:|||:!:|||!:!|||||| rAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsnAlaLys 274676 : AGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAG : 274732 141 : PheGlyArgArgLeuValValIleCysAlaPhePheMetTyrGlyGlyAlaValPheT : 160 .!!|||||| !:!!!.!:!!.!!|||||| |||||| ! !!|||!.!:!!! !| IleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuCysT 274733 : ATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTT : 274792 161 : yrTyrLeuAlaLeuProPheSerLysGlyThrIleThrGluAspAspAspAsnLeuTh : 179 ||! !:!! ! ! !!|||!!!! ! !|||:!! !! !! :!!!!:!.! !|| yrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrArgTh 274793 : ATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAAC : 274849 180 : rTyrArgProLeuValTyrProValAlaArgValIleValAspAlaArgHisSerPro : 198 | !.! !||| !! ! !!.! !!:! !||||||! !.! ! |||||| rValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThrSerPro 274850 : CGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCG : 274906 199 : IleSerGluIlePhePheTrpValGlnCysLeuSerGlyPheValAlaHisSerIleT : 218 ! !:!|||||| !!.!! !|||! !:!!|||||||||:!!!.!:!!|||! !. ThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerSerA 274907 : ACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCG : 274966 219 : hrThrGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAlaTyrGlyArgMetGl : 237 !!..!||||||! !||||||||||||||||||||| ||||||||||||!:!:!!.. laValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSe 274967 : CGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAG : 275023 238 : uIleLeuIleGlnTrpIleGluHisLeuValAspGlyArgGluAspLeuCysGlySer : 256 .:!:|||!!: !|||||| .!.!!!|||:!! ! !..!||| ::: rValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsnLysAsn 275024 : CGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaaaat : 275080 257 : Val<->AspAsnArgLeuAlaMetIleValHisGlnHisValAlaIleLeuArg : 273 ||| ::!..!:!!!.!:!!:!!|||.!.!!.|||:!! !:!!|||||| ValTyrPheSerGluIleGlyValValValGluHisHisLeuArgValLeuArg 275081 : gtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTCAGG : 275136 vulgar: CbirOr15 24 273 . KQ414889.1 274386 275136 + 389 M 233 699 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274387 275136 389 + . gene_id 13 ; sequence CbirOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274387 275136 . + . KQ414889.1 exonerate:protein2genome:local exon 274387 275136 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274387 275136 389 + . alignment_id 13 ; Query CbirOr15 ; Align 274387 25 699 ; Align 275089 258 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 379 Query range: 171 -> 412 Target range: 300174 -> 302166 172 : ThrGluAspAspAspAsnLeuThrTyrArgProLeuValTyrProValAlaArgValI : 191 ||| ! ! !!:|||! !||||||!:!||||||!.!||||||! ! ! ! !. ThrTyrLysArgGluAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpP 300175 : ACTTACAAAAGGGAGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGT : 300232 192 : leValAspAlaArgHisSerProIleSerGluIlePhePheTrpValGlnCysLeuSe : 210 !!:!!|||.!!!:! !||||||! !! !|||||| |||::: ...|||.!!:! heIleAspThrGlnThrSerProThrTyrGluIleValPhePhePheHisCysPheAl 300233 : TTATCGATACACAAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGC : 300289 211 : rGlyPheValAlaHisSerIleThrThrGlyAlaCysSerLeuAlaAlaValPheAla : 229 !!.!.!.:!! !:!!!:!:!:||||||!.!|||! !||||||||||||:!!|||!.! aAlaMetIleMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheVal 300290 : AGCGATGATCATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTC : 300346 230 : MetHisAlaTyrGlyArgMetGluIleLeuIleGlnTrpIleGluHisLeuValAspG : 249 ! ||| !! !|||!:!!!::!!|||! !!!: ! ! :!:||| !!||||||!!: ThrHisIleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluA 300347 : ACTCATATCTGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGA : 300406 250 : lyArgGluAspLeuCysGlySerValAspAsnArgLeuAlaMetIleValHisGlnHi : 268 !!! !! !!!: ! !! !.!! !||| ! !|||!.!:!:||||||!...!.|| rgThrGlyGluLysAspAspGlyProAsp---ProLeuValValIleValArgAspHi 300407 : GGACGGGAGAGAAGGACGACGGTCCTGAT---CCTTTGGTCGTTATCGTTCGAGATCA : 300460 269 : sValAlaIleLeu{Ar} >>>> Target Intron 1 >>>> {g}PheIleAla : 276 |||| !:!!|||{||} 1110 bp {|} ! ..! sValLysValLeu{Ar}++ ++{g}AspProCys 300461 : CGTGAAGGTTTTA{AG}gt.........................ag{A}GACCCGTGT : 301594 277 : LeuIleAspAsnIleLeuArgGluIleSerValValGluIleAlaGlyCysThrLeuA : 296 ! !.!! ! ! ! ! !.!.:!!!!!...||| ||||||| SerPheArg***ProThrPheHisLeuCysAlaValIleLysPheGluSerThrLeuA 301595 : TCCTTCCGTTAGCCAACTTTTCATCTCTGCgctgtaattaaatttgaatctACTTTAA : 301654 297 : snMetCysPheLeuGlyTyrTyrThrIleThrGluTrpGlySerGlnGluProAlaTh : 315 || |||||| !! ! !.!! !|||||| !!:!...!!: !! !.! snAlaLysPheLeuArgValIle***Phe***GluTrpGlnAsnSerAspThrIleAl 301655 : ATGCAAAGTTTTTACGAGTAATTTGATTTTAGGAATGGCAAAATAGCGACACGATCGC : 301711 316 : rTyrValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCys : 334 ! :!!|||!:!.!!! !||||||! |||!!!|||||||||||||||||||||||| aMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAsnIlePheIlePheCys 301712 : TATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATATTCATATTCTGC : 301768 335 : TyrIleGlyGluLeuValThrGluGln >>>> Target Intron 2 >>>> Cy : 344 ||||||||||||:!!:!!:!!|||||| 80 bp || TyrIleGlyGluIleLeuSerGluGln++ ++Cy 301769 : TACATCGGCGAGATTCTTTCCGAACAGgt.........................agTG : 301878 345 : sLysLysIleGlyGluValSerHisMetIleAspTrpTyrArgLeuProGluLysLys : 363 |!..:!!||||||..!!.!|||:!! !||||||||||||!.!||||||! !|||!:! sSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArg 301879 : TAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGA : 301935 364 : GlyLeuAlaLeuIleLeuIleIleAlaMetSerAsnSerSerPheLysLeuThrAlaA : 383 !.!! !! !|||||||||:!!! !!.!!!:|||.!.! ! !! ||||||||||||! AlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaG 301936 : GCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAG : 301995 384 : laAsnLeuPheGluLeuSerLeuSerThrPheGlyAsp >>>> Target Intron : 396 .!!!.:!!.!!!!:|||||||||!:!||||||.!!..! 82 bp lyLysIleIleAspLeuSerLeuAsnThrPheSerSer++ 301996 : GGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTgt.................. : 302036 397 : 3 >>>> ValValArgThrSerValAlaTyrLeuAsnMetLeuArgThrLeuThrS : 412 ||||||!:!|||||||||!.!|||||||||:!:|||||||||:!!|||! ++ValValLysThrSerValValTyrLeuAsnLeuLeuArgThrValThrA 302037 : .......agGTGGTGAAAACATCGGTGGTGTACTTGAATTTACTGCGAACAGTTACAA : 302164 413 : er : 412 :! sn 302165 : AC : 302166 vulgar: CbirOr15 171 412 . KQ414889.1 300174 302166 + 379 M 87 261 G 1 0 M 13 39 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 70 210 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300175 302166 379 + . gene_id 14 ; sequence CbirOr15 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300175 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300175 300476 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302166 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302166 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300175 302166 379 + . alignment_id 14 ; Query CbirOr15 ; Align 300175 172 261 ; Align 300436 260 39 ; Align 301588 274 210 ; Align 301878 344 156 ; Align 302116 396 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 336 Query range: 306 -> 411 Target range: 219328 -> 219803 307 : GluTrpGlySerGlnGluProAlaThrTyrValThrTyrIleIleLeuLeuIleSerL : 326 |||||| !|||.!.!!: !.!!!:! |||||||||||||||||||||||||||| GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 327 : euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValThrGluGln >>> : 344 ||||||||||||||||||||||||||||||||||||||:!!|||.!!|||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln++ 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAggt... : 219442 345 : > Target Intron 1 >>>> CysLysLysIleGlyGluValSerHisMetIleA : 355 73 bp |||:::||||||||||||:::|||:!!||||||! ++CysArgLysIleGlyGluMetSerTyrMetIleG 219443 : ......................agTGtaggaaaattggagaaatgtCGTACATGATCG : 219546 356 : spTrpTyrArgLeuProGluLysLysGlyLeuAlaLeuIleLeuIleIleAlaMetSe : 374 !:|||||||||||| !!! !|||||| !||| ! !:!!|||! !||||||||||| luTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaMetSe 219547 : AATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTATGTC : 219603 375 : rAsnSerSerPheLysLeuThrAlaAlaAsnLeuPheGluLeuSerLeuSerThrPhe : 393 ||||||||||.!.||||||||||||!.!|||:!! !!|||||||||:!!||||||||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPhe 219604 : GAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCACTTTT : 219660 394 : GlyAsp >>>> Target Intron 2 >>>> ValValArgThrSerValAlaTy : 403 !||| 87 bp ||||||!:!|||:!!|||.!!!: ThrAsp++ ++ValValLysThrAlaValThrPh 219661 : ACCGACgt.........................agGTCGTTAAGACTGCAGTCACGTT : 219777 404 : rLeuAsnMetLeuArgThrLeuThr : 411 !||||||:!:||||||||||||||| eLeuAsnValLeuArgThrLeuThr 219778 : TCTGAATGTACTACGAACATTGACT : 219803 vulgar: CbirOr15 306 411 . KQ414889.1 219328 219803 + 336 M 37 111 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 83 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219803 336 + . gene_id 15 ; sequence CbirOr15 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219668 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219668 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219669 219670 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219669 219755 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219754 219755 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219756 219803 . + . KQ414889.1 exonerate:protein2genome:local exon 219756 219803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219803 336 + . alignment_id 15 ; Query CbirOr15 ; Align 219329 307 111 ; Align 219513 344 156 ; Align 219756 396 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 329 Query range: 17 -> 273 Target range: 289717 -> 290482 18 : HisGluGluAspMetArgLeuSerIleGlnLeuAsnArgTrpLeuLeuGlnProLeuG : 37 :!!||| !|||!!:|||! !!!!.!!:!!||| !!.!|||:!!|||:!!|||:!!| TyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleLeuLysProIleG 289718 : TACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAG : 289775 38 : lyAlaTrpPro<->ArgSerAlaGlyIleSerSerMetGluArgTyrThrTyrThrLe : 55 || !!::||| !! !::! !! |||!!! |||||| .!!! ..!|| lyMetTyrProPheValPheSerArgAlaSerArgArgGluArgThrAlaSerValLe 289776 : GCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTT : 289832 56 : uValAsnValIleCysThrGlyLeuIleGlyPheIleLeuValProThrValValTyr : 74 |:!!! !:!!:!!||| !..!:!!:!! !||||||:!!|||||| ! ! !:!! uLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValProPheSerHisHis 289833 : GCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCAC : 289889 75 : MetThrLeuGluIleGluAspThrTyrAsnThrLeuLysLeuSerGlyProValSerP : 94 :!: !!!!... !.!.|||! ! !!!.. !:!!||| ! !||||||:!!!!!| ValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuGlyProLeuThrP 289890 : GTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGT : 289949 95 : hePheValMetAlaIleIleLysTyrSerSerLeuIlePheArgGluAsnAspIleAr : 113 ||! !:!!! .!!.!!.!!||||||!!!! !!!!! !.!.!:!! :::! ||| ! heCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGlySerAlaIleGl 289950 : TCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGG : 290006 114 : gLysGlyIleLysTyrIleGluAsnAspTrpMetAsnThrArgTyrGlnAsnAspArg : 132 !::: !!:!:|||:!!||||||!..||||||! !! !||| !!:!!:!! !!||| yArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAspGluAspHisArg 290007 : TCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGT : 290063 133 : IleIleMetIleLysSerAlaLysPheGlyArgArgLeuValValIleCysAlaPheP : 152 :!!||||||:!!!:!! !!.!! !.!..!!|||!.!|||:!! !:!:||||||.!!| ValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysLeuCysAlaIleP 290064 : GTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCT : 290123 153 : heMetTyrGlyGlyAlaValPheTyrTyrLeuAlaLeuProPheSerLysGlyThrIl : 171 ||:!!||| !|||!.!:!!! !||| !! !!.!:!!|||!!.! !..! !! !! heLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPheSerLysLysSe 290124 : TCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAAGAG : 290180 172 : eThrGluAspAspAspAsnLeuThrTyrArgProLeuValTyrProValAlaArgVal : 190 !..! :!!! !|||:!!||| !|||||||||..!||||||! ! !..!! ! rVal------AsnGlyAsnValThrIleArgProLeuThrTyrProGlyTyrGluGlu 290181 : CGTG------AACGGTAACGTGACTATCAGACCTCTAACTTATCCCGGTTACGAGGAG : 290231 191 : IleValAspAlaArgHisSerProIleSerGluIlePhePheTrpValGlnCysLeuS : 210 .!! !!|||!.!!:! ! |||||| ! !|||||| !!|||!! :!!!!.|||:!!! PhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetHisCysValT 290232 : TTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCT : 290291 211 : erGlyPheValAlaHisSerIleThrThrGlyAlaCysSerLeuAlaAlaValPheAl : 229 !! !.!.:!!.!! !:!||||||! !!.!|||! !||||||.!!.!!:!!||||| yrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePheAl 290292 : ACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGC : 290348 230 : aMetHisAlaTyrGlyArgMetGluIleLeuIleGlnTrpIleGluHisLeuValAsp : 248 |! |||.!!! !|||!:!!!::!!|||! !! ! !!:!:||| !!|||..! ! aThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAspLeuThrLys 290349 : CACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTGACAAAG : 290405 249 : GlyArgGluAspLeuCysGlySerValAspAsnArgLeuAlaMetIleValHisGlnH : 268 !! !! ! ||| !.!!|||..!:!!|||||||||:!::!!||| ! | ArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValValValSerGlyH 290406 : AGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTGTGAGCGGTC : 290465 269 : isValAlaIleLeuArg : 273 |||||! !||||||!:! isValGluIleLeuLys 290466 : ACGTGGAGATCTTGAAG : 290482 vulgar: CbirOr15 17 273 . KQ414889.1 289717 290482 + 329 M 23 69 G 0 3 M 132 396 G 2 0 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289718 290482 329 + . gene_id 16 ; sequence CbirOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289718 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289718 290482 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289718 290482 329 + . alignment_id 16 ; Query CbirOr15 ; Align 289718 18 69 ; Align 289790 41 396 ; Align 290186 175 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 315 Query range: 306 -> 411 Target range: 228247 -> 230518 307 : GluTrpGlySerGlnGluProAlaThrTyrValThrTyrIleIleLeuLeuIleSerL : 326 ||||||..! !!:!!||| !.!! ! !||||||||| ! ||||||:!!|||! GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerP 228248 : GAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCT : 228305 327 : euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValThrGluGln >>> : 344 !!||||||||||||||||||||||||||||||||||||:!!|||.!!|||!!. heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluHis++ 228306 : TTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACgt... : 228361 345 : > Target Intron 1 >>>> CysLysLysIleGlyGluValSerHisMetIleA : 355 1889 bp |||!:!|||:!!|||||| !|||:!!||||||! ++CysArgLysValGlyGluLysSerTyrMetIleG 228362 : ......................agTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCG : 230281 356 : spTrpTyrArgLeuProGluLysLysGlyLeuAlaLeuIleLeuIleIleAlaMetSe : 374 !:|||||||||||| !!! !!!.||| !|||..!! !|||||||||||||||||||| luTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 230282 : AATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTC : 230338 375 : rAsnSerSerPheLysLeuThrAlaAlaAsnLeuPheGluLeuSerLeuSerThrPhe : 393 ||||!!!||| |||!!!||||||!.!|||:!! !!|||||||||:!!!:!|||||| rAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnThrPhe 230339 : CAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACACTTTC : 230395 394 : GlyAsp >>>> Target Intron 2 >>>> ValValArgThrSerValAlaTy : 403 .!!||| 67 bp ||||||!:!||||||:!!!.!!: SerAsp++ ++ValValLysThrSerMetGlyPh 230396 : AGCGACgt.........................agGTCGTTAAAACGTCCATGGGTTT : 230492 404 : rLeuAsnMetLeuArgThrLeuThr : 411 !|||||||||||||||||||||||| eLeuAsnMetLeuArgThrLeuThr 230493 : CTTAAACATGCTACGAACACTGACG : 230518 vulgar: CbirOr15 306 411 . KQ414889.1 228247 230518 + 315 M 37 111 5 0 2 I 0 1885 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228248 230518 315 + . gene_id 17 ; sequence CbirOr15 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230403 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230403 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 230404 230405 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 230404 230470 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 230469 230470 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230471 230518 . + . KQ414889.1 exonerate:protein2genome:local exon 230471 230518 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228248 230518 315 + . alignment_id 17 ; Query CbirOr15 ; Align 228248 307 111 ; Align 230248 344 156 ; Align 230471 396 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 309 Query range: 24 -> 282 Target range: 236855 -> 237626 25 : SerIleGlnLeuAsnArgTrpLeuLeuGlnProLeuGlyAlaTrpProArgSerAlaG : 44 |||:!!|||! !||||||||| !:!!:!! !:!!|||.!!||||||!:!! !:!! SerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSer- 236856 : AGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCG- : 236913 45 : lyIleSerSerMetGluArgTyrThrTyrThrLeuValAsnValIleCysThrGlyLe : 63 |||!:!:!:|||||| !!! !! ! !:!!:!!|||||||||||| ! ! -----SerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAl 236914 : -----TCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGC : 236964 64 : uIleGlyPheIleLeuValProThrValValTyrMetThrLeuGluIleGluAspThr : 82 !||| !||| :!!:!!||| ! !:!!:!!:!:! !||||||! !! ! ! ! aIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPhe 236965 : AATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTC : 237021 83 : TyrAsnThrLeuLysLeuSerGlyProValSerPhePheValMetAlaIleIleLysT : 102 |||!..! !:!!|||:!! !||| !!:!!||| !!::|||.!...!||||||!..| TyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerT 237022 : TACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTT : 237081 103 : yrSerSerLeuIlePheArgGluAsnAspIleArgLysGlyIleLysTyrIleGluAs : 121 ||!!!! !|||:!:.!.|||...!!. !|||||| ! !.!!!!.:!!!!:|||!. yrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluTh 237082 : ACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGAC : 237138 122 : nAspTrpMetAsnThrArgTyrGlnAsnAspArgIleIleMetIleLysSerAlaLys : 140 !||||||! !..||| :::... ::: :::|||:!:|||! !|||||| rAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLys 237139 : CGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAA : 237195 141 : PheGlyArgArgLeuValValIleCysAlaPhePheMetTyrGlyGlyAlaValPheT : 160 |||.!!||| ! !!.!:!! !|||.!!.!!|||!!::!!|||||| !:!! | PheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyT 237196 : TTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGAT : 237255 161 : yrTyrLeuAlaLeuProPheSerLysGlyThrIleThrGluAspAspAspAsnLeuTh : 179 ||! !:!! ! ! !!! !!!!! ! !..!:!!..!! ! :!! ! !.! !! yrCysValMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIl 237256 : ATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGAT : 237312 180 : rTyrArgProLeuValTyrProValAlaArgValIleValAspAlaArgHisSerPro : 198 !! ||| !||| !! |||:!! !!:!! !:!!:!! !.! ! !:! !! eLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThr 237313 : CTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACT : 237369 199 : IleSerGluIlePhePheTrpValGlnCysLeuSerGlyPheValAlaHisSerIleT : 218 !!:!:!!!:||| !! !!! ! !|||! !||||||||||||:!!|||:!!!:!! !. MetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerA 237370 : ATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTG : 237429 219 : hrThrGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAlaTyrGlyArgMetGl : 237 !!! !.!!!.! ||||||.!!::!!.!.!..!! ||||||! !|||!:!:!!.. laIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSe 237430 : CGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAG : 237486 238 : uIleLeuIleGlnTrpIleGluHisLeuVal<->AspGlyArgGluAspLeuCysGly : 255 .:!::!!!!: !! !|||||| !!!!!||| !!:!.!|||... ! ! ! rValValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAsp 237487 : CGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGAC : 237543 256 : SerValAspAsnArgLeuAlaMetIleValHisGlnHisValAlaIleLeuArgPheI : 275 ..! ! !:!!..!:!! !!! ||||||.!.:!!|||:!! !:!:|||!:!! : AspHisPheAspGluIleProThrIleValGluGluHisLeuArgValLeuLys***V 237544 : GATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAG : 237603 276 : leAlaLeuIleAspAsnIleLeu : 282 !!..!|||:!:||| |||||| alCysLeuLeuAspLeuIleLeu 237604 : TATGTTTGTTGGATTTGATTTTG : 237626 vulgar: CbirOr15 24 282 . KQ414889.1 236855 237626 + 309 M 19 57 G 2 0 M 202 606 G 0 3 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236856 237626 309 + . gene_id 18 ; sequence CbirOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236856 237626 . + . KQ414889.1 exonerate:protein2genome:local exon 236856 237626 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236856 237626 309 + . alignment_id 18 ; Query CbirOr15 ; Align 236856 25 57 ; Align 236913 46 606 ; Align 237522 248 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 301 Query range: 306 -> 411 Target range: 224323 -> 224770 307 : GluTrpGlySerGlnGluProAlaThrTyrValThrTyrIleIleLeuLeuIleSerL : 326 ||||||...|||....!. !.!!!:! |||||||||.!!|||||||||!!:|||| GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 327 : euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeu >>>> Target Int : 340 ||||||||||||||||||||||||||||||||||||||||| 65 bp euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeu++ 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGgt............... : 224425 341 : ron 1 >>>> ValThrGluGlnCysLysLysIleGlyGluValSerHisMetIleA : 355 !! ! ||||||:::|||||||||::!||||||:!!||||||| --PhePheProGlnCysGluLysIleGlyGlnValSerTyrMetIleA 224426 : ..........taTTTTTTCCtcagtgtgaaaaaattggacaAGTGTCGTACATGATCG : 224533 356 : spTrpTyrArgLeuProGluLysLysGlyLeuAlaLeuIleLeuIleIleAlaMetSe : 374 |||||||||||||| !!! !!!.||| !|||..!! !|||||||||||||||||||| spTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 224534 : ACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGATGTC : 224590 375 : rAsnSerSerPheLysLeuThrAlaAlaAsnLeuPheGluLeuSerLeuSerThrPhe : 393 ||||||||||.!.||||||||||||!.!|||:!! !!||||||!!!|||!!!|||||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThrPhe 224591 : CAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACTTTC : 224647 394 : {G} >>>> Target Intron 2 >>>> {ly}AspValValArgThrSerValA : 402 {!} 67 bp { !} ! ||||||!:!|||:!!|||| {A}++ +-{sp}***ValValLysThrAlaValA 224648 : {G}gt.........................aa{AT}TAGGTTGTCAAGACAGCTGTCG : 224741 403 : laTyrLeuAsnMetLeuArgThrLeuThr : 411 ||!:!||||||:!!||||||||||||||| laPheLeuAsnValLeuArgThrLeuThr 224742 : CATTTTTGAACGTGTTACGAACATTGact : 224770 vulgar: CbirOr15 306 411 . KQ414889.1 224323 224770 + 301 M 33 99 5 0 2 I 0 61 3 0 2 M 54 162 S 0 1 5 0 2 I 0 63 3 0 2 S 1 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224770 301 + . gene_id 19 ; sequence CbirOr15 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224324 224422 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224422 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224423 224424 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224423 224487 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224486 224487 . + . intron_id 0 ; splice_site "TA" KQ414889.1 exonerate:protein2genome:local cds 224488 224650 . + . KQ414889.1 exonerate:protein2genome:local exon 224488 224650 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224651 224652 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224651 224717 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 224716 224717 . + . intron_id 1 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 224718 224770 . + . KQ414889.1 exonerate:protein2genome:local exon 224718 224770 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224770 301 + . alignment_id 19 ; Query CbirOr15 ; Align 224324 307 99 ; Align 224488 340 162 ; Align 224720 395 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 301 Query range: 273 -> 396 Target range: 234524 -> 235147 274 : PheIleAlaLeuIleAspAsnIleLeuArgGluIleSerValValGluIleAlaGlyC : 293 |||||| ! !|||!!:|||:!!:!!!.! !|||!!!:!!||||||:!:!.!|||| PheIleArgAsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuValGlyC 234525 : TTTATACGGAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGAT : 234582 294 : ysThrLeuAsnMetCysPheLeuGlyTyrTyrThrIleThr >>>> Target Int : 307 |||||||||||||||||.!.|||! !|||||| !:!!||| 189 b ysThrLeuAsnMetCysMetLeuGluTyrTyrLeuLeuThr++ 234583 : GCACGTTGAACATGTGCATGCTCGAGTATTATTTACTCACGgt............... : 234626 308 : ron 1 >>>> GluTrpGlySerGlnGluProAlaThrTyrValThrTyrIleIleL : 322 p ||| ......:::::: |||:!!|||||| |||: ++GluLysSerLysGluLysLeuAlaSerTyrVal---------IleV 234627 : ..........agGAAAAgtcgaaggaaaaattagCTTCATACGTC---------ATCG : 234849 323 : euLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValTh : 341 !!! !:!:|||:!!|||||||||||||||||||||||||||||||||||| !:!!|| alTyrValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuTh 234850 : TGTACGTGTCCATGACATTtaatatattcatattttgttACATCGGAGAGACGCTTAC : 234906 342 : rGluGln >>>> Target Intron 2 >>>> CysLysLysIleGlyGluValS : 351 ||||||| 74 bp |||! |||:!!|||||| ! rGluGln++ ++CysThrLysValGlyGluLysV 234907 : AGAGCAGgt.........................agTGTACCAAAGTCGGAGAAAAAG : 235010 352 : erHisMetIleAspTrpTyrArgLeuProGluLysLysGlyLeuAlaLeuIleLeuIl : 370 !:!!|||! !!!:|||||||||||||||.!.|||! !.!|||!.!|||:!!:!!|| alTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIl 235011 : TGTACATGACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGAT : 235067 371 : eIleAlaMetSerAsnSerSerPheLysLeuThrAlaAlaAsnLeuPheGluLeuSer : 389 ||||:!!! !|||!:!! ! !.!.|||:!!||||||!.!!!.!!!.!.:!!:!!||| eIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheLeuGlnMetSer 235068 : CATCTCCAGGTCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCT : 235124 390 : LeuSerThrPheGlyAspVal : 396 :!!:!!||||||||||||||| ValAlaThrPheGlyAspVal 235125 : GTCGCAACATTTGGCGATGTG : 235147 vulgar: CbirOr15 273 396 . KQ414889.1 234524 235147 + 301 M 33 99 5 0 2 I 0 185 3 0 2 M 11 33 G 3 0 M 23 69 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234525 235147 301 + . gene_id 20 ; sequence CbirOr15 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234525 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234525 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234525 235147 301 + . alignment_id 20 ; Query CbirOr15 ; Align 234525 274 99 ; Align 234813 307 33 ; Align 234846 321 69 ; Align 234989 344 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 290 Query range: 129 -> 273 Target range: 304446 -> 304869 130 : AsnAspArgIleIleMetIleLysSerAlaLysPheGlyArgArgLeuValValIleC : 149 !..|||||| !!!:|||:!!|||! !!.!:!!.!.||||||!.!|||..!:!!|||| ArgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIleC 304447 : AGAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAATCT : 304504 150 : ysAlaPhePheMetTyrGlyGlyAlaValPheTyrTyrLeuAlaLeuProPheSerLy : 168 |||||.!.||||||||| !|||!.!..!.!!|||:!! !!.!:!!! !|||:!!! ysAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheAlaTh 304505 : GCGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCGAC : 304561 169 : sGlyThrIleThrGluAspAspAspAsnLeuThrTyrArgProLeuValTyrProVal : 187 |||||| !..! |||!!: !!|||! !||| !!:!|||||||||||||||..! rGlyThrTyrVal---AspGluTyrAsnArgThrIleLysProLeuValTyrProThr 304562 : CGGAACGTATGTG---GATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACC : 304615 188 : AlaArgValIleValAspAlaArgHisSerProIleSerGluIlePhePheTrpValG : 207 !!!!!.!:!! !!|||!.!!:! |||||||||! !|||:!: !!!:!!::|||! TyrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheValH 304616 : TACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTC : 304675 208 : lnCysLeuSerGlyPheValAlaHisSerIleThrThrGlyAlaCysSerLeuAlaAl : 226 !.|||:!!!!!|||!:!||| !:!!|||||||||.!!|||||||||.!!|||||||| isCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAl 304676 : ATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGC : 304732 227 : aValPheAlaMetHisAlaTyrGlyArgMetGluIleLeuIleGlnTrpIleGluHis : 245 |:!!||||||! ||||||! !|||!:!!!:!!:|||:!!!!:... ! :!:! !! aLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAsp 304733 : TCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGAT : 304789 246 : LeuValAspGlyArgGluAspLeuCysGlySerValAspAsnArgLeuAlaMetIleV : 265 ||||||:!!.!!!:!|||... ..!..!:!!|||!!.|||||| ! |||| LeuValAsnSerLysGluSer------SerAspLeuAspLysArgLeuIleGluIleV 304790 : CTTGTCAACAGCAAAGAATCA------TCTGATTTAGATAAACGATTAATAGAAATTG : 304843 266 : alHisGlnHisValAlaIleLeuArg : 273 ||.!.!!.|||:!! !||||||||| alGluHisHisLeuArgIleLeuArg 304844 : TTGAGCATCATTTGCGAATTTTAAGG : 304869 vulgar: CbirOr15 129 273 . KQ414889.1 304446 304869 + 290 M 43 129 G 1 0 M 79 237 G 2 0 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304447 304869 290 + . gene_id 21 ; sequence CbirOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304447 304869 . + . KQ414889.1 exonerate:protein2genome:local exon 304447 304869 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 304447 304869 290 + . alignment_id 21 ; Query CbirOr15 ; Align 304447 130 129 ; Align 304576 174 237 ; Align 304813 255 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 270 Query range: 306 -> 411 Target range: 277371 -> 277842 307 : GluTrpGlySerGlnGluProAlaThrTyrValThrTyrIleIleLeuLeuIleSerL : 326 ||||||..!..!...!!: ! !||| ..!|||:!!.!!!!::!!|||||||||: GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 327 : euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValThrGluGln >>> : 344 !: |||||||||||| ! ! |||||||||||||||:!!:!!||||||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 345 : > Target Intron 1 >>>> CysLysLysIleGlyGluValSerHisMetIleA : 355 72 bp |||||||||:!!||||||||| !:!!|||! : ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 356 : spTrpTyrArgLeuProGluLysLysGlyLeuAlaLeuIleLeuIleIleAlaMetSe : 374 !!|||||| !||||||!!:||| ! !||| !|||:!!|||||||||:!!! || snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 375 : rAsnSerSerPheLysLeuThrAlaAlaAsnLeuPheGluLeuSerLeuSerThrPhe : 393 |!:! ...|||:::||||||......|||...::::::|||:!!! !|||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 394 : GlyAsp >>>> Target Intron 2 >>>> ValValArgThrSerValAlaTy : 403 |||||| 84 bp |||:!!!:!|||!!! !!||||| GlyAsp++ ++ValIleLysThrThrPheAlaTy 277703 : GGCGATgt.........................agGTAATAAAAACCACTTTCgcgta : 277816 404 : rLeuAsnMetLeuArgThrLeuThr : 411 |||||||:::|||||| ! !||| rLeuAsnIleLeuArgGlnThrThr 277817 : tttaaatattctacgCCAAACGACG : 277842 vulgar: CbirOr15 306 411 . KQ414889.1 277371 277842 + 270 M 37 111 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277842 270 + . gene_id 22 ; sequence CbirOr15 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277842 270 + . alignment_id 22 ; Query CbirOr15 ; Align 277372 307 111 ; Align 277555 344 156 ; Align 277795 396 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 256 Query range: 306 -> 408 Target range: 264537 -> 265001 307 : GluTrpGlySerGlnGluProAlaThrTyrValThrTyrIleIleLeuLeuIleSerL : 326 ||||||! !|||!!.::: ... ..!||||||.!!!!::!!|||||||||: GluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerM 264538 : GAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATACTGATATCAA : 264595 327 : euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValThrGluGln >>> : 344 !! ! !|||||||||:!!.!.|||||||||||||||:!!:!!||||||||| etCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGln++ 264596 : TGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcaggt... : 264651 345 : > Target Intron 1 >>>> CysLysLysIleGlyGluValSerHisMetIleA : 355 78 bp |||||||||:!!||||||||| !:!!||| : ++CysLysLysValGlyGluValValTyrMetSerA 264652 : ......................agTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGA : 264760 356 : spTrpTyrArgLeuProGluLysLysGlyLeuAlaLeuIleLeuIleIleAlaMetSe : 374 !!|||||| !|||||| ! ||| ! !|||! !||||||||||||||| !! || snTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLeuIleIleLeuArgSe 264761 : ATTGGTATTACTTACCCTACAAAGATATCCTTGATCTGATTCTCATCATTTTAAGATC : 264817 375 : rAsnSerSerPheLysLeuThrAlaAlaAsnLeuPheGluLeuSerLeuSerThrPhe : 393 |!:! ! !||||||!!!||||||!.!!!.:!!.!!.!.:!!|||:!!! !|||||| rSerValValPheLysPheThrAlaGlyLysIleLeuHisMetSerMetTyrThrPhe 264818 : CAGCGTGGTGTTTAAATTCACCGCTGGAAAGATACTTCACATGTCCATGTACACATTC : 264874 394 : GlyAsp >>>> Target Intron 2 >>>> ValValArgThrSerValAlaTy : 403 .!!||| 80 bp |||:!!!:!:!!||| !!.!!|| SerAsp++ ++ValIleLysSerSerPheThrTy 264875 : AGTGACgt.........................aggTAATCAAATCCTCTTTCACGTA : 264984 404 : rLeuAsnMetLeuArg : 408 |||||||:!:|||||| rLeuAsnLeuLeuArg 264985 : CTTAAACTTACTTCGC : 265001 vulgar: CbirOr15 306 408 . KQ414889.1 264537 265001 + 256 M 37 111 5 0 2 I 0 74 3 0 2 M 52 156 5 0 2 I 0 76 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264538 265001 256 + . gene_id 23 ; sequence CbirOr15 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264538 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264726 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265001 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265001 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264538 265001 256 + . alignment_id 23 ; Query CbirOr15 ; Align 264538 307 111 ; Align 264727 344 156 ; Align 264963 396 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 226 Query range: 306 -> 396 Target range: 272836 -> 273176 307 : GluTrpGlySerGlnGluProAlaThrTyrValThrTyrIleIleLeuLeuIleSerL : 326 |||||| !..!!!.!!: ! !!:! ..!||||||.!!!!::!!|||||||||: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 327 : euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValThrGluGln >>> : 344 !:|||||||||||||||||| |||||||||||||||:!!:!!||||||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 345 : > Target Intron 1 >>>> CysLysLysIleGlyGluValSerHisMetIleA : 355 70 bp ||||||||||||||||||||| !:!!|||! : ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 356 : spTrpTyrArgLeuProGluLysLysGlyLeuAlaLeuIleLeuIleIleAlaMetSe : 374 !!|||||| !||||||! ||| ! !|||! !|||||||||||||||:!!! !! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 375 : rAsnSerSerPheLysLeuThrAlaAlaAsnLeuPheGluLeuSerLeuSerThrPhe : 393 !!:! ! !.!!|||:!!||||||!.!!..:!! !! :!!|||:!!! !|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 394 : GlyAspVal : 396 ||||||||| GlyAspVal 273166 : GGCGATGTA : 273176 vulgar: CbirOr15 306 396 . KQ414889.1 272836 273176 + 226 M 37 111 5 0 2 I 0 66 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273176 226 + . gene_id 24 ; sequence CbirOr15 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273176 226 + . alignment_id 24 ; Query CbirOr15 ; Align 272837 307 111 ; Align 273018 344 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 219 Query range: 17 -> 202 Target range: 294669 -> 295224 18 : HisGluGluAspMetArgLeuSerIleGlnLeuAsnArgTrpLeuLeuGlnProLeuG : 37 :!!..!.!.|||:!! ! !|||:!!:!!! ! !||| !!||||||:!!|||:!!| AsnArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleG 294670 : AACAGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCG : 294727 38 : lyAlaTrpProArg<->SerAlaGlyIleSerSerMetGluArgTyrThrTyrThrLe : 55 || !||||||! ! ! !::! !! !|||!.!:!!.!.!:! ! !! ! !:! lyLeuTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIl 294728 : GTCTTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAAT : 294784 56 : uValAsnValIleCysThrGlyLeuIleGlyPheIleLeuValProThrValValTyr : 74 !:!!! !!.! |||||| ! !:!! !|||:!!||||||||| !! ! !!:! eLeuIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPhe 294785 : TCTGATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTC : 294841 75 : MetThrLeuGluIleGluAspThrTyrAsnThrLeuLysLeuSerGlyProValSerP : 94 ..!!!!.!.:!:::::::... !:!!|||||| !||||||||| !! CysValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuT 294842 : TGTGTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTAT : 294901 95 : hePheValMetAlaIleIleLysTyrSerSerLeuIlePheArgGluAsnAspIleAr : 113 :!! !:!!:!::!!!!::!!!:!||||||!!!|||:!!!!.!:! ! !! .!!!: yrSerMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLy 294902 : ACTCTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAA : 294958 114 : gLysGlyIleLysTyrIleGluAsnAspTrpMetAsnThrArgTyrGlnAsnAspArg : 132 ! ! !!|||:!! !!|||||||||||||||! ! ! ! ! !!! !.!. !!||| sHisCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArg 294959 : GCATTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGA : 295015 133 : IleIleMetIleLysSerAlaLysPheGlyArgArgLeuValValIleCysAlaPheP : 152 ||||||||||||!:!|||! ! !! !!:!|||:!!..!||| !! !.!!.!!. AlaIleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleI 295016 : GCGATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTA : 295075 153 : heMetTyrGlyGlyAlaValPheTyrTyrLeuAlaLeuProPheSerLysGlyThrIl : 171 !.!!:|||.!!..!||||||! |||:!! ! !:::|||||| .........:! leIleTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLe 295076 : TAATCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTT : 295132 172 : eThrGluAspAspAspAsnLeuThrTyrArgProLeuValTyrProValAlaArgVal : 190 : |||:!! ! ! ||| !||| !||| !!||| ! !|||! ! !..!:!! u---GluAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeu 295133 : G---GAGAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTA : 295186 191 : IleValAspAlaArgHisSerProIleSerGluIle : 202 .!!||||||||| ! !||||||! !! !|||||| PheValAspAlaTyrSerSerProThrTyrGluIle 295187 : TTCGTAGACGCTTATTCCAGTCCTACCTACGAGATC : 295224 vulgar: CbirOr15 17 202 . KQ414889.1 294669 295224 + 219 M 24 72 G 0 3 M 130 390 G 1 0 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294670 295224 219 + . gene_id 25 ; sequence CbirOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294670 295224 . + . KQ414889.1 exonerate:protein2genome:local exon 294670 295224 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294670 295224 219 + . alignment_id 25 ; Query CbirOr15 ; Align 294670 18 72 ; Align 294745 42 390 ; Align 295135 173 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 209 Query range: 306 -> 396 Target range: 206050 -> 206401 307 : GluTrpGlySerGlnGluProAlaThrTyrValThrTyrIleIleLeuLeuIleSerL : 326 ||||||! !!:!.!..!. !!.!!.!! !:!!..!||||||! |||! !||||||! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 327 : euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValThrGluGln >>> : 344 !|||||| !:!!||||||.!.||||||||||||:!!|||:!!! !!!:||| ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 345 : > Target Intron 1 >>>> CysLysLysIleGlyGluValSerHisMetIleA : 355 81 bp ! ! :!:||| !..!||| !! !:!:: ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 356 : spTrpTyrArgLeuProGluLysLysGlyLeuAlaLeuIleLeuIleIleAlaMetSe : 374 !!|||||||||||||||.!.!:! ! !.!! !:!!:!!|||||||||||||||||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 375 : rAsnSerSerPheLysLeuThrAlaAlaAsnLeuPheGluLeuSerLeuSerThrPhe : 393 ||||! ! !!.!.||||||||||||!.!!!.:!!||||||:!!||||||:!!!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 394 : GlyAspVal : 396 !|||||| ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: CbirOr15 306 396 . KQ414889.1 206050 206401 + 209 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 209 + . gene_id 26 ; sequence CbirOr15 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 209 + . alignment_id 26 ; Query CbirOr15 ; Align 206051 307 111 ; Align 206243 344 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 197 Query range: 298 -> 396 Target range: 305076 -> 305783 299 : PheLeuGlyTyrTyrThrIleThrGluTrpGlySerGlnGluProAlaThrTyrValT : 318 |||||| ||| !!!:|||! !|||....!. !!!.!!:! !..!| PheLeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrT 305077 : TTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAA : 305134 319 : hrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl : 337 |||||! !:!:||||||||||||:!!||||||||||||||||||!!.||||||||||| hrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGl 305135 : CATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGG : 305191 338 : yGluLeuValThrGluGlnCys{Ly} >>>> Target Intron 1 >>>> {s} : 345 ||||:!!:!!! !|||:!! {!.} 413 bp {.} yGluIleLeuMetGluLysVal{Se}-+ ++{r} 305192 : TGAGATTCTTATGGAAAAGGTG{ag}tt.........................ag{T} : 305630 346 : LysIleGlyGluValSerHisMetIleAspTrpTyrArgLeuProGluLysLysGlyL : 365 !..:!!||| ! !!!! !||||||..!||||||!.!|||||| |||! ! !! SerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleH 305631 : AGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATAC : 305688 366 : euAlaLeuIleLeuIleIleAlaMetSerAsnSerSerPheLysLeuThrAlaAlaAs : 384 !!.!||||||||||||||||||||||||!:!!:! !! !|||:!!!:!|||!.!!! isGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLy 305689 : ATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAA : 305745 385 : nLeuPheGluLeuSerLeuSerThrPheGlyAspVal : 396 .:!! !!!!:|||||||||||||||||||||:!!||| sValValAspLeuSerLeuSerThrPheGlyAsnVal 305746 : AGTAGTTGATTTATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: CbirOr15 298 396 . KQ414889.1 305076 305783 + 197 M 46 138 S 0 2 5 0 2 I 0 409 3 0 2 S 1 1 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305077 305783 197 + . gene_id 27 ; sequence CbirOr15 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305077 305216 . + . KQ414889.1 exonerate:protein2genome:local exon 305077 305216 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305217 305218 . + . intron_id 1 ; splice_site "tt" KQ414889.1 exonerate:protein2genome:local intron 305217 305629 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305628 305629 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305630 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305630 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305077 305783 197 + . alignment_id 27 ; Query CbirOr15 ; Align 305077 299 138 ; Align 305631 346 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 195 Query range: 338 -> 396 Target range: 214848 -> 215022 339 : LeuValThrGluGlnCysLysLysIleGlyGluValSerHisMetIleAspTrpTyrA : 358 :!!:!! !:!!||||||||||||:!!||||||||||||:!!||||||!!:||||||| IleMetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrA 214849 : ATTATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACC : 214906 359 : rgLeuProGluLysLysGlyLeuAlaLeuIleLeuIleIleAlaMetSerAsnSerSe : 377 ||||||||! !!.||| !|||..!! !|||||||||!!:||||||||||||||||| rgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSe 214907 : GATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATC : 214963 378 : rPheLysLeuThrAlaAlaAsnLeuPheGluLeuSerLeuSerThrPheGlyAspVal : 396 | !!|||!!!||||||!.!|||:!! ! |||||||||:!!|||||||||.!!..!||| rValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214964 : CGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215020 vulgar: CbirOr15 338 396 . KQ414889.1 214848 215022 + 195 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214849 215022 195 + . gene_id 28 ; sequence CbirOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214849 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214849 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214849 215022 195 + . alignment_id 28 ; Query CbirOr15 ; Align 214849 339 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 191 Query range: 342 -> 407 Target range: 254271 -> 254555 343 : GlnCysLysLysIleGlyGluValSerHisMetIleAspTrpTyrArgLeuProGluL : 362 |||||| !|||:!!||||||||| !:!!|||! !||||||||| !||||||:!!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 363 : ysLysGlyLeuAlaLeuIleLeuIleIleAlaMetSerAsnSerSerPheLysLeuTh : 381 :!!:! !|||! !|||||||||||||||.!! |||||| ! ! !!:!!:!!|| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 382 : rAlaAlaAsnLeuPheGluLeuSerLeuSerThrPheGlyAsp >>>> Target I : 396 ||||......:::|||...:::||||||! !|||||||||||| 89 rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt............. : 254433 397 : ntron 1 >>>> ValValArgThrSerValAlaTyrLeuAsnMetLeu : 407 bp ||||||!:!|||.!! !!|||||||||||||||||| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeu 254434 : ............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTT : 254555 vulgar: CbirOr15 342 407 . KQ414889.1 254271 254555 + 191 M 53 159 5 0 2 I 0 85 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254555 191 + . gene_id 29 ; sequence CbirOr15 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254272 254430 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254430 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254431 254432 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254431 254519 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254518 254519 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254520 254555 . + . KQ414889.1 exonerate:protein2genome:local exon 254520 254555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254555 191 + . alignment_id 29 ; Query CbirOr15 ; Align 254272 343 159 ; Align 254520 396 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 190 Query range: 182 -> 253 Target range: 202688 -> 202901 183 : LeuValTyrProValAlaArgValIleValAspAlaArgHisSerProIleSerGluI : 202 :!!..!!:! !! !!:!! !! !!|||:!!|||!.!|||:!!||||||:!:!:!|||| ValThrPheSerPheSerGlyPheIleIleAspValArgTyrSerProValAsnGluI 202689 : GTGACGTTCTCCTTCTCAGGATTTATCATTGATGTTAGATACAGTCCTGTGAACGAGA : 202746 203 : lePhePheTrpValGlnCysLeuSerGlyPheValAlaHisSerIleThrThrGlyAl : 221 ||||||||! !:!!!:! !:!!:!!! !.!!:!! !|||.!!:!!|||..!||||| lePhePheSerIleArgIleValAlaValIleLeuIleHisGlyValThrValGlyAl 202747 : TCTTCTTCTCGATTCGAATCGTAGCTGTCATCCTAATTCACGGTGTCACTGTAGGAGC : 202803 222 : aCysSerLeuAlaAlaValPheAlaMetHisAlaTyrGlyArgMetGluIleLeuIle : 240 ||||!!!|||.!!|||:!!||||||:!:|||! !! !|||!:!|||!!::!!|||!!: aCysCysLeuThrAlaLeuPheAlaValHisAspCysGlyGlnMetAspValLeuMet 202804 : TTGTTGCTTGACAGCGTTGTTTGCGGTTCACGATTGCGGCCAGATGGACGTTTTGATG : 202860 241 : GlnTrpIleGluHisLeuValAspGlyArgGluAspLeu : 253 |||:!:|||||||||:!!|||||||||..!|||:!! AlaTrpLeuGluHisLeuMetAspGlyArgSerAspMet 202861 : GCCTGGCTGGAACATTTGATGGATGGTCGTTCGGATATG : 202901 vulgar: CbirOr15 182 253 . KQ414889.1 202688 202901 + 190 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202689 202901 190 + . gene_id 30 ; sequence CbirOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202689 202901 . + . KQ414889.1 exonerate:protein2genome:local exon 202689 202901 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202689 202901 190 + . alignment_id 30 ; Query CbirOr15 ; Align 202689 183 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 306 -> 343 Target range: 214629 -> 214740 307 : GluTrpGlySerGlnGluProAlaThrTyrValThrTyrIleIleLeuLeuIleSerL : 326 ||||||..!|||.!..!. !.!!||| |||||||||:!::!:|||! !||||||| GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValValLeuTyrIleSerL 214630 : gAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGGTGTTGTATATCTCTC : 214687 327 : euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValThrGluGln : 343 ||||||||||||||||||||||||||||||||||||||||||||:!!|||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValSerGluGln 214688 : tcactttcaatattttcatattttgttaCATAGGCGAGCTTGTGTCTGAACAG : 214740 vulgar: CbirOr15 306 343 . KQ414889.1 214629 214740 + 144 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214630 214740 144 + . gene_id 31 ; sequence CbirOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214630 214740 144 + . alignment_id 31 ; Query CbirOr15 ; Align 214630 307 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 341 -> 396 Target range: 283273 -> 283438 342 : GluGlnCysLysLysIleGlyGluValSerHisMetIleAspTrpTyrArgLeuProG : 361 ..!||||||||||||:!!||||||||| !:!!|||! :!!! !!:! !||||||! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 362 : luLysLysGlyLeuAlaLeuIleLeuIleIleAlaMetSerAsnSerSerPheLysLe : 380 !:||| ! !||| !|||:!!|||||||||:!!! |||!:! ...|||:: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 381 : uThrAlaAlaAsnLeuPheGluLeuSerLeuSerThrPheGlyAspVal : 396 :||||||:::...|||...:::::!||| !! !||||||! !|||||| eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspVal 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTA : 283438 vulgar: CbirOr15 341 396 . KQ414889.1 283273 283438 + 124 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283438 124 + . gene_id 32 ; sequence CbirOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283438 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283438 124 + . alignment_id 32 ; Query CbirOr15 ; Align 283274 342 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 301 -> 347 Target range: 261718 -> 261856 302 : TyrTyrThrIleThrGluTrpGlySerGlnGluProAlaThrTyrValThrTyrIleI : 321 :::::: ::: ||||||!.!..!|||!!: ! !!.! !||||||.!!! PhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheM 261719 : ttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCA : 261776 322 : leLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuVa : 340 !::!!||||||:!!:!! !||||||:!!||||||.!!|||||||||||||||:!!:! etMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLe 261777 : TGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACT : 261833 341 : lThrGluGlnCysLysLysIle : 347 !||||||||| :!! ! :!: uThrGluGlnValGlnHisLeu 261834 : AACGGAACAGGTACAACATTTG : 261856 vulgar: CbirOr15 301 347 . KQ414889.1 261718 261856 + 122 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261719 261856 122 + . gene_id 33 ; sequence CbirOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 261719 261856 . + . KQ414889.1 exonerate:protein2genome:local exon 261719 261856 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 261719 261856 122 + . alignment_id 33 ; Query CbirOr15 ; Align 261719 302 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 339 -> 405 Target range: 292380 -> 292578 340 : ValThrGluGlnCysLysLysIleGlyGluValSerHisMetIleAspTrpTyrArgL : 359 ||| ! ! ||| !!!..:!!|||!.!.!.!.!|||:!! ! !!!:||||||!.!| ValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnL 292381 : GTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATC : 292438 360 : euProGluLysLysGlyLeuAlaLeuIleLeuIleIleAlaMetSerAsnSerSerPh : 378 |||||..!::!|||!.!! !! !:!!:!!|||:!::!!|||!!:!!!!!. ! !!.! euProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIl 292439 : TGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGAT : 292495 379 : eLysLeuThrAlaAlaAsnLeuPheGluLeuSerLeuSerThrPheGlyAspValVal : 397 !||||||||||||!.!!!.:!!|||! |||||||||!:!|||||||||! !||| ! eLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArg 292496 : CAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGT : 292552 398 : ArgThrSerValAlaTyrLeuAsn : 405 ..!:!!!.!:!!!.!! :!!:!! GluSerLysLeuValLeuIleHis 292553 : GAATCAAAACTAGTCTTGATACAC : 292578 vulgar: CbirOr15 339 405 . KQ414889.1 292380 292578 + 119 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292381 292578 119 + . gene_id 34 ; sequence CbirOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292381 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292381 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292381 292578 119 + . alignment_id 34 ; Query CbirOr15 ; Align 292381 340 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 306 -> 343 Target range: 291368 -> 291479 307 : GluTrpGlySerGlnGluProAlaThrTyrValThrTyrIleIleLeuLeuIleSerL : 326 ||||||! !|||...!!: !! ! ! :!!||||||:!!! !||||||! !|||! GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 327 : euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValThrGluGln : 343 !!||||||||||||.!.||||||||||||:!!|||||||||:!! !! !||| heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAG : 291479 vulgar: CbirOr15 306 343 . KQ414889.1 291368 291479 + 109 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 291479 109 + . gene_id 35 ; sequence CbirOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 291479 109 + . alignment_id 35 ; Query CbirOr15 ; Align 291369 307 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 337 -> 396 Target range: 196633 -> 196810 338 : GluLeuValThrGluGlnCysLysLysIleGlyGluValSerHisMetIleAspTrpT : 357 :::||| !!..!|||:!! !!:!!!:!:!!||||||..!|||:!!.!.!!: |||| AspLeuPheValGluLysSerGluArgValGlyGluThrSerTyrPheMetProTrpT 196634 : gaTTTATTCGTTGAAAAGAGCGAAAGAGTAGGCGAAACGTCGTACTTCATGCCGTGGT : 196691 358 : yrArgLeuProGluLysLysGlyLeuAlaLeuIleLeuIleIleAlaMetSerAsnSe : 376 || !||||||!!: ! !!.! ! !:!!! ! !|||||| !! :!!!:! yrAspLeuProAspAspLeuAlaLysAsnIleArgThrIleIleLeuArgAlaSerHi 196692 : ACGATCTTCCGGACGATTTAGCCAAGAATATAAGAACGATCATACTAAGAGCCAGTCA : 196748 377 : rSerPheLysLeuThrAlaAlaAsnLeuPheGluLeuSerLeuSerThrPheGlyAsp : 395 ! !!! !..|||:!!!.!|||!!.||||||!!:|||||||||..!.!!||| !!||| sProSerSerLeuSerGlyAlaLysLeuPheAspLeuSerLeuGlnAlaPheCysAsp 196749 : TCCGTCAAGTTTGTCTGGCGCCAAGTTGTTCGATCTTTCGCTTCAAGCATTTTGCGAC : 196805 396 : Val : 396 ||| Val 196806 : GTG : 196810 vulgar: CbirOr15 337 396 . KQ414889.1 196633 196810 + 103 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 196634 196810 103 + . gene_id 36 ; sequence CbirOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 196634 196810 . + . KQ414889.1 exonerate:protein2genome:local exon 196634 196810 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 196634 196810 103 + . alignment_id 36 ; Query CbirOr15 ; Align 196634 338 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1425 Query range: 17 -> 414 Target range: 208185 -> 212081 18 : AsnArgAspTyrLysAspAspLeuGlnValSerValGlnLeuAsnValTrpThrLeuL : 37 ||||||:!!||||||:!!||||||... !!!:!|||!::||||||||||||||||||| AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 38 : ysProIleGlyThrTrpProLysSerProAspArgSerTrpIleGluAlaValCysCy : 56 || !||||||:!!||||||!:!||| !||||||||||||:!!||| ! ! ysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHi 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCA : 208300 57 : sArgThrLeuHisAlaSerCysTyrGlyLeuLeuAlaLeuIleLeuIleProCysGly : 75 !! ! !|||:!!!.! ! !!:!! !!||||||!.!!!!|||:!!|||||| !||| sIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGly 208301 : TATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGC : 208357 76 : MetTyrIleValLeuGluMetLysAspPheTyrAsnGlnLeuLysLeuAlaSerAlaL : 95 |||!:! :!!|||! !:!::!!|||||||||:!!|||||||||:!!..!||||||| MetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaL 208358 : ATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTC : 208417 96 : euSerPhePheMetMetSerValMetLysTyrCysAlaLeuIleValHisGlnAlaAs : 114 |||||||||||||||||:!! !!! !|||||| !:!!! !|||!.!:!!!.!|| euSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAs 208418 : TGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGA : 208474 115 : pIleArgLysCysValGluTyrIleGluGlyAspTrpArgAsnValArgTyrThrGlu : 133 ||||||||||||||||||||||:!!|||!.!|||||||||||||||..!:!! !||| pIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGlu 208475 : CATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAG : 208531 134 : AspArgAsnIleMetLeuLysAsnAlaAsnPheGlyArgArgLeuValValIleCysG : 153 ||||||!!.||||||||| ! ||||||!:!|||!.!|||!:!|||:!!|||||||||| AspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysG 208532 : GACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCG : 208591 154 : lyPhePheMetTyrGlyGlyIleLeuPheTyrTyrValAlaLeuProLeuThrArgAl : 172 || !|||||||||||||||::::::|||||||||:!!||||||||||||||||||! lyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAs 208592 : GAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGA : 208648 173 : aLysIleThrAspGluAspGlyAsnMetThrTyrArgArgLeuValTyrProValPro : 191 !|||:!!..!!!:|||! !||||||:!!|||||||||||||||||||||||||||||| pLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValPro 208649 : CAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCT : 208705 192 : LysValIleValAspThrArgArgSerProValAsnGluIlePheTyrPheIleGlnL : 211 ||| !!|||:!!|||..!||| !|||||||||||||||||||||||| :!!|||| LysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnL 208706 : AAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAAT : 208765 212 : euLeuSerGlyPheValAlaHisAsnIleThrValAlaAlaCysGlyLeuAlaAlaLe : 230 |||||||||||||||||||||||||||||||||||!.!|||||||||||||||||||| euLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLe 208766 : TGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCT : 208822 231 : uLeuAlaMetHisAlaCysGlyGlnLeuGlnValLeuIleSerTrpMetAsnHisLeu : 249 |||||||||||||||||||||||||||||||:!!|||!!:|||||||||.!. ! ||| uLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeu 208823 : GCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTG : 208879 250 : ValAspGlyArgGluGluValAsnAspThrValAspGluArgLeuAlaSerMetIleG : 269 |||||||||||||||!!:! !.!. ! !.!:!!|||:!!|||||||||!:!!!::!:: ValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleValG 208880 : GTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCGTGG : 208939 270 : lnLeuHisValArgIleLeu{As} >>>> Target Intron 1 >>>> {n}Ph : 277 !!! !|||||||||:!::!!{||} 1536 bp {|}|| luGlnHisValArgValIle{As}++ ++{n}Ph 208940 : AGCAGCATGTTCGAGTGATC{AA}gt.........................ag{T}TT : 210499 278 : eIleSerLeuThrGluAspLeuLeuHisGluIleSerLeuValGluValValGlyCys : 296 ||||:!!|||||||||:!!|||||||||||||||||||||:!!|||:!!||||||||| eIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGluMetValGlyCys 210500 : TATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAATGGTGGGGTGC : 210556 297 : ThrMetAsnIleCysPheLeuGlyTyrTyrCysMetMet >>>> Target Intro : 310 |||:!!|||!!:|||||||||||||||||| |||!!: 66 bp ThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210557 : ACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt................. : 210600 311 : n 2 >>>> GluTrpAspPheLysGlnProValSerGlyLeuThrTyrLeuIleLeu : 325 |||||||||! !|||.!.|||:!!|||.!!|||||||||:!!:!!||| ++GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValLeu 210601 : ........agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTACTC : 210709 326 : LeuValSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuAlaG : 345 |||..!||||||||||||||||||||||||||||||||||||||||||:!!||||||| LeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAlaG 210710 : CTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGCTG : 210769 346 : luGln >>>> Target Intron 3 >>>> ThrMetLysValCysGluSerSer : 354 ||||| 999 bp |||:!:|||||| ! |||!.!||| luGln++ ++ThrValLysValGlyGluLysSer 210770 : AACAggt.........................agACAGTAAAAGTTGGAGAAAAGTCT : 211795 355 : TyrMetIleAspTrpTyrArgLeuProLysLysLysGlyLeuAlaIleIleLeuIleI : 374 |||||||||||||||||||||:!!||| !||||||||||||!.!:!! !|||!!:| TyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValValProLeuMetI 211796 : TACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGATGA : 211855 375 : leCysMetSerAsnAlaThrThrArgLeuThrAlaGlyAsnIleIleGluLeuSerIl : 393 ||! !||||||:!!:!!||||||!:!:!!||||||||||||:!!|||! |||||||| leSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleValLeuSerIl 211856 : TCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTTCTTTCAAT : 211912 394 : eSerArgPheGlyAsp >>>> Target Intron 4 >>>> ValIleLysSerS : 403 ||||!!!||||||||| 104 bp |||||||||!!!| eSerSerPheGlyAsp++ ++ValIleLysThrS 211913 : CAGTAGTTTCGGTGACgt.........................agGTTATCAAGACTT : 212046 404 : erValValTyrLeuAsnMetLeuArgThrPheThr : 414 |||||..!||||||||||||||||||||||||||| erValThrTyrLeuAsnMetLeuArgThrPheThr 212047 : CGGTAACATACTTGAACATGCTACGAACATTCACA : 212081 vulgar: CbirOr14 17 414 . KQ414889.1 208185 212081 + 1425 M 258 774 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 995 3 0 2 M 52 156 5 0 2 I 0 100 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 212081 1425 + . gene_id 1 ; sequence CbirOr14 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208186 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208961 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211929 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 211930 211931 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 211930 212033 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 212032 212033 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 212034 212081 . + . KQ414889.1 exonerate:protein2genome:local exon 212034 212081 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208186 212081 1425 + . alignment_id 1 ; Query CbirOr14 ; Align 208186 18 774 ; Align 210499 277 99 ; Align 210664 310 111 ; Align 211774 347 156 ; Align 212034 399 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 752 Query range: 19 -> 278 Target range: 217153 -> 217930 20 : AspTyrLysAspAspLeuGlnValSerValGlnLeuAsnValTrpThrLeuLysProI : 39 !!:|||::: ::::::...:::|||:!!|||! !||| !||| !|||||||||! GluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProM 217154 : GAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGA : 217211 40 : leGlyThrTrpProLysSerProAspArgSerTrpIleGluAlaValCysCysArgTh : 58 !:||| !||||||!!.|||! ! !! !!!! ! !..! !:!! !! !!:! etGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLe 217212 : TGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACT : 217268 59 : rLeuHisAlaSerCysTyrGlyLeuLeuAlaLeuIleLeuIleProCysGlyMetTyr : 77 !:!!:!!|||! !||||||||||||:!!::!!!!:!!!!!:!!||||||..!|||||| uIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyr 217269 : GATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTAC : 217325 78 : IleValLeuGluMetLysAspPheTyrAsnGlnLeuLysLeuAlaSerAlaLeuSerP : 97 :!: !!||||||:!::!!|||.!!|||:!!:!!||||||||| !.!! !!|||! !| ValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIleP 217326 : GTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCT : 217385 98 : hePheMetMetSerValMetLysTyrCysAlaLeuIleValHisGlnAlaAspIleAr : 116 ||! !:!!|||:!! !!:!:||||||! !:!!||||||||||||:!!||||||||||| heCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleAr 217386 : TCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCG : 217442 117 : gLysCysValGluTyrIleGluGlyAspTrpArgAsnValArgTyrThrGluAspArg : 135 |:!!||||||..! |||||| !!||||||||||||||||||! ! !:!!|||||| gGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArg 217443 : CGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGG : 217499 136 : AsnIleMetLeuLysAsnAlaAsnPheGlyArgArgLeuValValIleCysGlyPheP : 155 .!. |||:!! !||||||||||||||||||!:!||||||:!!:!!||| !|||| GluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPheP 217500 : GAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCT : 217559 156 : heMetTyrGlyGlyIleLeuPheTyrTyrValAlaLeuProLeuThrArgAlaLysIl : 174 ||||||||.!!|||...:::|||||||||::!|||:!!|||:!!!:! !!.!!:!|| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIl 217560 : TCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAAT : 217616 175 : eThrAspGluAspGlyAsnMetThrTyrArgArgLeuValTyrProValProLysVal : 193 | !...|||:!!||||||:!:|||!:!! !! !||||||!:!||| !! !!||| ! eLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyr 217617 : TCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTAT : 217673 194 : IleValAspThrArgArgSerProValAsnGluIlePheTyrPheIleGlnLeuLeuS : 213 |||:!!||||||||| !!!!|||..!||||||||| ! !:!|||:!!||||||:!!: IleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleA 217674 : ATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCG : 217733 214 : erGlyPheValAlaHisAsnIleThrValAlaAlaCysGlyLeuAlaAlaLeuLeuAl : 232 !!||| !:!! !|||...|||||| !|||||||||.!!||||||||| !!!!|| laGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAl 217734 : CTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGC : 217790 233 : aMetHisAlaCysGlyGlnLeuGlnValLeuIleSerTrpMetAsnHisLeuValAsp : 251 |:!:|||||||||||||||:!!:!!||||||!!:!:!|||:!!.!.||||||:!!||| aValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAsp 217791 : GGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGAC : 217847 252 : GlyArgGluGluValAsnAspThrValAspGluArgLeuAlaSerMetIleGlnLeuH : 271 ||||||! !!!::!!!:!||||||||||||! |||:!!||||||!!::!!...! !| GlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnH 217848 : GGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAAC : 217907 272 : isValArgIleLeuAsnPheIle : 278 ||||||||||||||!!.! !:!! isValArgIleLeuLysCysVal 217908 : ACGTTCGGATATTAAAGTGTGTA : 217930 vulgar: CbirOr14 19 278 . KQ414889.1 217153 217930 + 752 M 259 777 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217154 217930 752 + . gene_id 2 ; sequence CbirOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217154 217930 . + . KQ414889.1 exonerate:protein2genome:local exon 217154 217930 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217154 217930 752 + . alignment_id 2 ; Query CbirOr14 ; Align 217154 20 777 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 740 Query range: 19 -> 278 Target range: 221357 -> 222134 20 : AspTyrLysAspAspLeuGlnValSerValGlnLeuAsnValTrpThrLeuLysProI : 39 ||||||||| :!!:!!:!!:!!||||||||||||!:! !|||! !|||||||||| AspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProI 221358 : GATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGA : 221415 40 : leGlyThrTrpProLysSerProAspArgSerTrpIleGluAlaValCysCysArgTh : 58 |||||..!||||||!!.||| !!:!!! !||| !:!!||| ! ! !! ! !! leGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLe 221416 : TCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 59 : rLeuHisAlaSerCysTyrGlyLeuLeuAlaLeuIleLeuIleProCysGlyMetTyr : 77 !:!!:!!!.! !||||||.!!|||:!!.!!!!!:!!|||:!!||||||.!!:!:||| uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 78 : IleValLeuGluMetLysAspPheTyrAsnGlnLeuLysLeuAlaSerAlaLeuSerP : 97 :!::!!||||||:!::!!||| !!||||||::!:!!|||||| !.!! !!||||||| ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 98 : hePheMetMetSerValMetLysTyrCysAlaLeuIleValHisGlnAlaAspIleAr : 116 ||! !:!!|||:!! !!:!:|||||| ! !||||||:!!:!!:!! !|||||||| heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 117 : gLysCysValGluTyrIleGluGlyAspTrpArgAsnValArgTyrThrGluAspArg : 135 |:!!|||:!!||| !|||||| !!||||||!:!|||:!!! !|||:!!:!!|||!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 136 : AsnIleMetLeuLysAsnAlaAsnPheGlyArgArgLeuValValIleCysGlyPheP : 155 :!!||||||:!!:!!||||||! !|||||||||||||||:!!:!!|||||| !|||| AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 156 : heMetTyrGlyGlyIleLeuPheTyrTyrValAlaLeuProLeuThrArgAlaLysIl : 174 ||||||||.!!|||...:::|||||||||::!|||:!!|||!!!!:! !!.!||||| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 175 : eThrAspGluAspGlyAsnMetThrTyrArgArgLeuValTyrProValProLysVal : 193 | !!! :!!||| |||:::|||::: ! !:!!|||!:!||| !! !!!:! !! eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 194 : IleValAspThrArgArgSerProValAsnGluIlePheTyrPheIleGlnLeuLeuS : 213 ||||||||||||||| !||||||||||||||||||.!.!:!! :!!|||:!!:!!: IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 214 : erGlyPheValAlaHisAsnIleThrValAlaAlaCysGlyLeuAlaAlaLeuLeuAl : 232 !!||| !:!! !|||!:!|||||| !|||||||||.!!|||!.!|||:!!!!!|| laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 233 : aMetHisAlaCysGlyGlnLeuGlnValLeuIleSerTrpMetAsnHisLeuValAsp : 251 |:!!|||||||||||||||:!!|||||||||!!:||||||:!!!!.||||||:!!:!! aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 252 : GlyArgGluGluValAsnAspThrValAspGluArgLeuAlaSerMetIleGlnLeuH : 271 ||||||! !!!::!! !:!!!.!||||||..!|||:!!|||!.!!!::!:.!.! !| GlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnH 222052 : GGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAAC : 222111 272 : isValArgIleLeuAsnPheIle : 278 ||||||||||||||.!.!:!:!! isValArgIleLeuGlnTyrVal 222112 : ACGTTCGAATATTGCAGTATGTA : 222134 vulgar: CbirOr14 19 278 . KQ414889.1 221357 222134 + 740 M 259 777 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221358 222134 740 + . gene_id 3 ; sequence CbirOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221358 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221358 222134 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221358 222134 740 + . alignment_id 3 ; Query CbirOr14 ; Align 221358 20 777 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 711 Query range: 20 -> 413 Target range: 284505 -> 287264 21 : TyrLysAspAspLeuGlnValSerValGlnLeuAsnValTrpThrLeuLysProIleG : 40 !:: ! |||! !..! !|||||||||:!!||| !||| !||||||||||||| TrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleG 284506 : TGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTG : 284563 41 : lyThrTrpProLysSerProAspArgSerTrpIleGluAlaValCysCysArgThrLe : 59 ||..!|||||| |||! ! ! !!!! :!:||| !:!! !!! ! !..!|| lyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLe 284564 : GCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCT : 284620 60 : uHisAlaSerCysTyrGlyLeuLeuAlaLeuIleLeuIleProCysGlyMetTyrIle : 78 | !! ! !!! ! !|||:!!!.!!!!:!!|||:!!||||||!.!:!!! !! ! uAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThr 284621 : CGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACA : 284677 79 : ValLeuGluMetLys<->AspPheTyrAsnGlnLeuLysLeuAlaSerAlaLeuSerP : 97 ||||||!!:! ! |||.!! !!!..:!!:!!|||:!! !.!! !!||||||| ValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerP 284678 : GTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTT : 284737 98 : hePheMetMetSerValMetLysTyrCysAlaLeuIleValHisGlnAlaAspIleAr : 116 ||! !||||||:!!!.!!!:||||||! ! !|||||| !!.! !.! ! ||| ! heCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGl 284738 : TCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGG : 284794 117 : gLysCysValGluTyrIleGluGlyAsp{Tr} >>>> Target Intron 1 >>> : 126 !:!!||||||:!! !!|||...!.!|||{||} 1012 bp yGlnCysValLysAspIleArgAlaAsp{Tr}++ 284795 : CCAATGCGTGAAGGACATTCGTGCGGAC{TG}gt........................ : 284828 127 : > {p}ArgAsnValArgTyrThrGluAspArgAsnIleMetLeuLysAsnAlaAsnP : 144 {|}! !::: !!! |||:::|||...|||||| ! ! !:!|||!... +-{p}LeuSerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgI 284829 : .ac{G}CTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAA : 285890 145 : heGlyArgArgLeuValValIleCysGlyPhePheMetTyrGlyGlyIleLeuPheTy : 163 !!|||||| !|||!.!:!!.!!|||!.! !|||||||||..!||| !!!!||||| leGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTy 285891 : TTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTA : 285947 164 : rTyrValAlaLeuProLeuThrArgAlaLysIleThrAspGluAspGlyAsnMetThr : 182 | !..!!.!:!!|||||| !! !!.!::: |||!!: !! !||| !||| rThrThrValMetProLeuCysThrValArg---ThrGluIleIleAspAsnGluThr 285948 : CACCACGGTGATGCCGTTGTGCACAGTACGC---ACGGAGATCATCGACAACGAGACC : 286001 183 : TyrArgArgLeuValTyrProValProLysValIleValAspThrArgArgSerProV : 202 ||| !! !!.!!:!|||:!! !:::! !:!!:!!||| !!|||! !|||||| ValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProS 286002 : GTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGT : 286061 203 : alAsnGluIlePheTyrPheIleGlnLeuLeuSerGlyPheValAlaHisAsnIleTh : 221 ! !|||||| ! ! |||!!:|||! !|||:!!!.!|||||| !:!!::::!!|| erPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValTh 286062 : CGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCAC : 286118 222 : rValAlaAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGln : 240 ||||!.!||||||.!!|||||||||:!!!!!!.!||||||!.!|||||||||!!!::! rValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArg 286119 : TGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGG : 286175 241 : ValLeuIleSerTrpMetAsnHisLeuValAspGly<-><->ArgGluGluValAsnA : 258 :!!|||:!:!!! !:!!:!! ! |||||||||||| !!..!:!!! ! . IleLeuValThrLysLeuAspLysLeuValAspGlyValLysGlyArgLysGlyLeuS 286176 : ATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGA : 286235 259 : spThrValAspGluArgLeuAlaSerMetIleGlnLeuHisValArgIleLeu{As} : 276 .!||| !!!::!!||||||!.!..!!!:|||:!!! !|||:!!!:!||||||{..} erThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}+ 286236 : GCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}g : 286291 277 : >>>> Target Intron 2 >>>> {n}PheIleSerLeuThrGluAspLeuLeu : 285 408 bp {!}|||||||||! !! !|||! |||||| + ++{y}PheIleSerGlnIleGluGlyLeuLeu 286292 : t.........................ag{T}TTTATATCGCAAATCGAGGGGCTCCTA : 286724 286 : HisGluIleSerLeuValGluValValGlyCysThrMetAsnIleCysPheLeuGlyT : 305 :!!||||||!!!!!!|||||||||:!!|||||||||:!!||||||||||||||||||| AsnGluIleCysPheValGluValIleGlyCysThrLeuAsnIleCysPheLeuGlyT 286725 : AACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGGGAT : 286784 306 : yrTyrCysMetMet >>>> Target Intron 3 >>>> GluTrpAspPheLys : 314 |||||! :!!! ! 80 bp ||||||!!: !.. yrTyrLeuLeuThr++ ++GluTrpGluGlnSer 286785 : ATTATTTACTGACGgt.........................agGAATGGGAGCAAAGT : 286891 315 : GlnProValSerGlyLeuThrTyrLeuIleLeuLeuValSerValThrPheAsnIleP : 334 :!! !!:!!.!! !:!!||||||! !! |||||||||||| !!|||||||||:!!| GluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerPheThrPheAsnValP 286892 : GAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTT : 286951 335 : heIlePheCysTyrIleGlyGluLeuLeuAlaGluGln >>>> Target Intron : 347 |||||.!!|||||||||||||||:!!|||:!!|||||| 74 bp heIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286952 : TCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt.................. : 286992 348 : 4 >>>> ThrMetLysValCysGluSerSerTyrMetIleAspTrpTyrArgLeuP : 363 !:!:|||||| !! !|||!!!||||||||||||||||||||||||| ++CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuP 286993 : .......agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGC : 287112 364 : roLysLysLysGlyLeuAlaIleIleLeuIleIleCysMetSerAsnAlaThrThrAr : 382 || !|||! !!.!! !!.!:!:|||||||||.!!..!:!!||||||:!!:!!! !!: roGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLy 287113 : CAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAA : 287169 383 : gLeuThrAlaGlyAsnIleIleGluLeuSerIleSerArgPheGlyAspValIleLys : 401 !||||||||||||!!.||||||!!:||||||:!!|||!!!||| !!..!|||! !! sLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIle 287170 : ATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATC : 287226 402 : SerSerValValTyrLeuAsnMetLeuArgThrPhe : 413 ! !!:!:!! !|||! !:!!:!!! ...||| IleAsnLeuSerTyrTyrHisLeuTyrAspAsnPhe 287227 : ATAAATTTATCCTATTATCATTTGTacgataatttt : 287264 vulgar: CbirOr14 20 413 . KQ414889.1 284505 287264 + 711 M 63 189 G 0 3 M 42 126 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 47 141 G 1 0 M 78 234 G 0 6 M 23 69 S 0 2 5 0 2 I 0 404 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284506 287264 711 + . gene_id 4 ; sequence CbirOr14 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284506 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284506 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286698 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 4 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 3 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287264 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287264 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284506 287264 711 + . alignment_id 4 ; Query CbirOr14 ; Align 284506 21 189 ; Align 284698 84 126 ; Align 285839 127 141 ; Align 285980 175 234 ; Align 286220 253 69 ; Align 286700 277 99 ; Align 286879 310 111 ; Align 287064 347 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 708 Query range: 17 -> 279 Target range: 226903 -> 227689 18 : AsnArgAspTyrLysAspAspLeuGlnValSerValGlnLeuAsnValTrpThrLeuL : 37 .!.!.!||||||:!!!!: !!|||.!.:!!|||:!!||||||||| !||| !|||| GluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuL 226904 : GAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGA : 226961 38 : ysProIleGlyThrTrpProLysSerProAspArgSerTrpIleGluAlaValCysCy : 56 |||||:!!|||! !||||||..!|||! ! ! !!!||| ! |||! ! ! !! !! ysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSe 226962 : AACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTC : 227018 57 : sArgThrLeuHisAlaSerCysTyrGlyLeuLeuAlaLeuIleLeuIleProCysGly : 75 ! !! !:!! ! ! !||||||!.!|||:!!::!!!! |||:!! !! !!||| rTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGly 227019 : CTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGC : 227075 76 : MetTyrIleValLeuGluMetLysAspPheTyrAsnGlnLeuLysLeuAlaSerAlaL : 95 :!!|||:!:|||||||||:!!|||! ! !|||||| !||||||:!! !.!! !!: LeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProM 227076 : TTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGA : 227135 96 : euSerPhePheMetMetSerValMetLysTyrCysAlaLeuIleValHisGlnAlaAs : 114 !!||||||||| !||||||:!!:!:||||||! ! !|||! !!|||:!!! !|| etSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAs 227136 : TGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGA : 227192 115 : pIleArgLysCysValGluTyrIleGluGlyAspTrpArgAsnValArgTyrThrGlu : 133 ||||! !:!!||||||||| |||:!! !!||||||!:!|||:!!|||||| !||| pIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGlu 227193 : CATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAG : 227249 134 : AspArgAsnIleMetLeuLysAsnAlaAsnPheGlyArgArgLeuValValIleCysG : 153 |||||||||:!:|||:!!! ! !!||| !!!:!||||||!:!|||:!!..!|||||| AspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysT 227250 : GACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCA : 227309 154 : lyPhePheMetTyrGlyGlyIleLeuPheTyrTyrValAlaLeuProLeuThrArgAl : 172 !||||||:!:!:!.........:::|||:::|||:!!!.!:!!|||:!!!.! !!. hrPhePheValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGl 227310 : CGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGG : 227366 173 : aLysIleThrAspGluAspGlyAsnMetThrTyrArgArgLeuValTyrProValPro : 191 !!..:!!.!! |||||||||||| !:!|||! !!:!:!! !!:!||| !!||| ySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPhePro 227367 : AAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCA : 227423 192 : LysValIleValAspThrArgArgSerProValAsnGluIlePheTyrPheIleGlnL : 211 |||:!!|||!.!|||..!||| !|||||| !!||||||||||||!:!! :!!|||! LysIleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnP 227424 : AAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAAT : 227483 212 : euLeuSerGlyPheValAlaHisAsnIleThrValAlaAlaCysGlyLeuAlaAlaLe : 230 !!:!!!!!|||.!!||| !|||..!:!!||| !|||||||||.!!:!!|||||||| heValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLe 227484 : TTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCT : 227540 231 : uLeuAlaMetHisAlaCysGlyGlnLeuGlnValLeuIleSerTrpMetAsnHisLeu : 249 |||||||:!:|||||||||||||||:!!:!!||||||:!:||||||:!!...|||||| uLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeu 227541 : GCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTG : 227597 250 : ValAspGlyArgGluGluValAsnAspThrValAspGluArgLeuAlaSerMetIleG : 269 :!!|||||||||! !!!::!!!:! ! |||:!!|||!!:|||:!!||||||!!::!! IleAspGlyArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValT 227598 : ATCGACGGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCA : 227657 270 : lnLeuHisValArgIleLeuAsnPheIleSer : 279 ! !|||||||||||||||!!.! !:!!!!! hrHisHisValArgIleLeuLysCysValThr 227658 : CTCACCACGTTCGAATATTGAAGTGTGTAACG : 227689 vulgar: CbirOr14 17 279 . KQ414889.1 226903 227689 + 708 M 262 786 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226904 227689 708 + . gene_id 5 ; sequence CbirOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226904 227689 . + . KQ414889.1 exonerate:protein2genome:local exon 226904 227689 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226904 227689 708 + . alignment_id 5 ; Query CbirOr14 ; Align 226904 18 786 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 694 Query range: 20 -> 409 Target range: 278558 -> 280465 21 : TyrLysAspAspLeuGlnValSerValGlnLeuAsnValTrpThrLeuLysProIleG : 40 !::!!. |||! !..! !|||||||||:!!||| !||| !||||||||||||| TrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleG 278559 : TGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTG : 278616 41 : lyThrTrpProLysSerProAspArgSerTrpIleGluAlaValCysCysArgThrLe : 59 ||..!|||||| |||! ! ! !!!! :!:||| !:!! !!! ! !..!|| lyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLe 278617 : GCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCT : 278673 60 : uHisAlaSerCysTyrGlyLeuLeuAlaLeuIleLeuIleProCysGlyMetTyrIle : 78 | !! ! !!! ! !|||:!!!.!!!!:!!|||:!!||||||!.!:!!! !! ! uAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThr 278674 : CGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACA : 278730 79 : ValLeuGluMetLys<->AspPheTyrAsnGlnLeuLysLeuAlaSerAlaLeuSerP : 97 ||||||!!:! ! |||.!! !!!..:!!:!!|||:!! !.!! !!||||||| ValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerP 278731 : GTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTT : 278790 98 : hePheMetMetSerValMetLysTyrCysAlaLeuIleValHisGlnAlaAspIleAr : 116 ||! !! !|||:!!..!!!:||||||! ! !|||!!: !!.! !.! ! ||| ! heCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGl 278791 : TCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGG : 278847 117 : gLysCysValGluTyrIleGluGlyAspTrpArg<-><-><->AsnValArgTyrThr : 132 !|||||||||.!. !!|||... !|||||| ! ::: !||| yLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGlu 278848 : CAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaa : 278904 133 : GluAspArgAsnIleMetLeuLysAsnAlaAsnPheGlyArgArgLeuValValIleC : 152 |||:::|||...|||||| ! ! !:!|||!...!!|||||| !|||!.!:!!.!! GluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheS 278905 : gaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCA : 278964 153 : ysGlyPhePheMetTyrGlyGlyIleLeuPheTyrTyrValAlaLeuProLeuThrAr : 171 !!!.! !|||||||||..!||| !:!!|||||| !!.!!.!:!!|||||| ! erAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAl 278965 : GCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGC : 279021 172 : gAlaLysIleThrAspGluAspGlyAsnMetThrTyrArgArgLeuValTyrProVal : 190 !!.!::: |||!!: !! !||| ||| ||| !! !!.!!:!|||:!! aValArg---ThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIle 279022 : AGTACGC---ACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATC : 279075 191 : ProLysValIleValAspThrArgArgSerProValAsnGluIlePheTyrPheIleG : 210 !:::! !:!!:!!||| !!|||! !|||||| ! !|||||| ! ! |||!!:| TyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetG 279076 : TATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGC : 279135 211 : lnLeuLeuSerGlyPheValAlaHisAsnIleThrValAlaAlaCysGlyLeuAlaAl : 229 ||! !|||:!!!.!|||||| !:!!::::!!||||||!.!||||||.!!||| !|| lnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAl 279136 : AATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGC : 279192 230 : aLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnValLeuIleSerTrpMetAsnHis : 248 |:!!!!!!.!||||||!.!|||||||||!!!::!:!!|||:!:!!! !:!!:!! ! aValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLys 279193 : TGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAG : 279249 249 : LeuValAspGly<-><->ArgGluGluValAsnAspThrValAspGluArgLeuAlaS : 266 |||:!!|||||| !!..!:!! ! ..!||| !!!::!!||||||!.!. LeuIleAspGlyValLysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyA 279250 : CTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAG : 279309 267 : erMetIleGlnLeuHisValArgIleLeu{As} >>>> Target Intron 1 >> : 276 .!!!:|||:!!! !|||:!!!:!||||||{..} 571 bp spIleIleGluHisHisLeuLysIleLeu{Gl}++ 279310 : ATATCATCGAGCATCATCTGAAGATACTG{GG}gt....................... : 279343 277 : >> {n}PheIleSerLeuThrGluAspLeuLeuHisGluIleSerLeuValGluVal : 293 {!}|||||||||! !! !|||! ||||||:!!||||||!!!!!!||||||||| ++{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluVal 279344 : ..ag{T}TTTATATCGCAAATCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTG : 279961 294 : ValGlyCysThrMetAsnIleCysPheLeuGlyTyrTyrCysMetMet >>>> Tar : 310 :!!|||||||||:!!||||||||||||||| !||||||! :!:! ! IleGlyCysThrLeuAsnIleCysPheLeuThrTyrTyrLeuLeuThr++ 279962 : ATTGGTTGCACGTTGAACATATGCTTTTTGACATATTATTTACTCACGgt........ : 280014 311 : get Intron 2 >>>> GluTrpAspPheLysGlnProValSerGlyLeuThrTyr : 322 80 bp ||||||!!: !!..!. !!:!!.!! !!!!|||||| ++GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyr 280015 : .................agGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTAT : 280128 323 : LeuIleLeuLeuValSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluL : 342 |||!!:!!!|||:!!|||:!!|||||||||:!!||||||.!!|||||||||||||||: LeuMetPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluI 280129 : TTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAA : 280188 343 : euLeuAlaGluGln >>>> Target Intron 3 >>>> ThrMetLysValCys : 351 !!|||:!!|||||| 74 bp !:!:|||||| !! leLeuSerGluGln++ ++CysLeuLysValGly 280189 : TTCTCTCCGAACaggt.........................agTGCTTAAAAGTCGGC : 280289 352 : GluSerSerTyrMetIleAspTrpTyrArgLeuProLysLysLysGlyLeuAlaIleI : 371 ! !|||!!!||||||||||||||||||||||||||| !||||||!.!! !!.!:!:| ValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuI 280290 : GTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGA : 280349 372 : leLeuIleIleCysMetSerAsnAlaThrThrArgLeuThrAlaGlyAsnIleIleGl : 390 ||||||||.!!..!:!!||||||:!!:!!! !!:!||||||||||||!!.||||||!! leLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAs 280350 : TACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGA : 280406 391 : uLeuSerIleSerArgPheGlyAspValIleLysSerSerValValTyrLeuAsnMet : 409 :||||||:!!|||!!!||| !!..!|||! !! ! !!:!:!! !|||! !:!!:!! pLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280407 : TCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280463 vulgar: CbirOr14 20 409 . KQ414889.1 278558 280465 + 694 M 63 189 G 0 3 M 44 132 G 0 9 M 46 138 G 1 0 M 78 234 G 0 6 M 23 69 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278559 280465 694 + . gene_id 6 ; sequence CbirOr14 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278559 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278559 279340 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278559 280465 694 + . alignment_id 6 ; Query CbirOr14 ; Align 278559 21 189 ; Align 278751 84 132 ; Align 278892 128 138 ; Align 279030 175 234 ; Align 279270 253 69 ; Align 279913 277 99 ; Align 280092 310 111 ; Align 280277 347 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 672 Query range: 8 -> 280 Target range: 212818 -> 213634 9 : GlyIleArgAspGluProArgIleTyrAsnArgAspTyrLysAspAspLeuGlnValS : 28 |||! ! !!!::!! !!:!:!! ! :!! !! !|||:!! ! :::...:::| GlyLysAspGluLysLeuGlnValGluAspCysThrTyrGluLysArgValAsnLeuS 212819 : GGAAAAGATGAGAAATTGCAGGTCGAAGACTGTACCTACGAGAAACGtgtaaatttaa : 212876 29 : erValGlnLeuAsnValTrpThrLeuLysProIleGlyThrTrpProLysSerProAs : 47 ||::: !! !||| !||| !|||||||||! ||| !|||||| ! !.! !! ! erIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspLysSerTy 212877 : gtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCTA : 212933 48 : pArgSerTrpIleGluAlaValCysCysArgThrLeuHisAlaSerCysTyrGlyLeu : 66 ! !||| !|||||| ! ! !..!||| !:!!:!!.!! !|||||||||||| rValSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLeu 212934 : CGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTG : 212990 67 : LeuAlaLeuIleLeuIleProCysGlyMetTyrIleValLeuGluMetLysAspPheT : 86 :!!!.!! !:!!:!!|||||||||.!!:!!|||:!: !!|||!!::!:::::::...: IleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGluAsnIleP 212991 : ATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatatat : 213050 87 : yrAsnGlnLeuLysLeuAlaSerAlaLeuSerPhePheMetMetSerValMetLysTy : 105 ::...::::!!:!!||| !.!! !!!!:!!|||! !:!! :!!:!! !||||| heLysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTy 213051 : ttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTA : 213107 106 : rCysAlaLeuIleValHisGlnAlaAspIleArgLysCysValGluTyrIleGluGly : 124 | !:!!||||||:!!||| ! !|||||||||! !|||||||||:!!!!::!! ! rHisSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMetLysTyr 213108 : TCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATAT : 213164 125 : AspTrpArgAsnValArgTyrThrGluAspArgAsnIleMetLeuLysAsnAlaAsnP : 144 ||||||!:!|||:!!! !:!! !||||||!:!.!.|||||| ! !||||||!:!| AspTrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSerP 213165 : GACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCT : 213224 145 : heGlyArgArgLeuValValIleCysGlyPhePheMetTyrGlyGlyIleLeuPheTy : 163 |||||!:!|||:!!|||..!||||||!.!|||||||||||| !|||.!! !||||| heGlyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheThrPheTy 213225 : TTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTA : 213281 164 : rTyrValAlaLeuProLeuThrArgAlaLysIleThrAspGluAspGlyAsnMetThr : 182 |!:!:!!!.!:!!|||:!!!:! !! !|||!!:..!! |||||| !|||:!!||| rPheLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAsnValThr 213282 : TTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACA : 213338 183 : TyrArgArgLeuValTyrProValProLysValIleValAspThrArgArgSerProV : 202 !:!|||!:!:!!||| !|||||| !!!:! !!|||||||||..!||| !||||||| PheArgGlnMetValValProValSerArgPheIleValAspValArgTyrSerProV 213339 : TTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTG : 213398 203 : alAsnGluIlePheTyrPheIleGlnLeuLeuSerGlyPheValAlaHisAsnIleTh : 221 ||||||||||||||!:!!!.||||||:!!:!!:!!||| ! :!! !||| !|||.! alAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAl 213399 : TGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGC : 213455 222 : rValAlaAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGln : 240 !|||!.!||||||.!!|||||||||:!!!!!|||:!:|||||||||||||||:!! aValValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGly 213456 : GGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGC : 213512 241 : ValLeuIleSerTrpMetAsnHisLeuValAspGlyArgGluGluValAsnAspThrV : 260 :!!|||!!:||||||:!!.!.||||||:!!||||||||||||!!::!!!:! ! !.!| IleLeuMetSerTrpLeuGluHisLeuIleAspGlyArgGluAspMetSerLysAsnV 213513 : ATTTTGATGAGCTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGCAAGAATG : 213572 261 : alAspGluArgLeuAlaSerMetIleGlnLeuHisValArgIleLeuAsnPheIleSe : 279 |||||!!:|||:!!||| !!!::!:.!.! !|||||||||||||||!!.!:::!:.. alAspAspArgIleAlaValIleValAsnGlnHisValArgIleLeuLysTrpValGl 213573 : TGGACGACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTGAAGTGGGTGGA : 213629 280 : rLeu : 280 !||| uLeu 213630 : ATTG : 213634 vulgar: CbirOr14 8 280 . KQ414889.1 212818 213634 + 672 M 272 816 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212819 213634 672 + . gene_id 7 ; sequence CbirOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212819 213634 . + . KQ414889.1 exonerate:protein2genome:local exon 212819 213634 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212819 213634 672 + . alignment_id 7 ; Query CbirOr14 ; Align 212819 9 816 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 478 Query range: 5 -> 350 Target range: 256589 -> 258387 6 : ArgTyrLeuGlyIleArgAspGluProArgIleTyrAsnArgAspTyrLysAspAspL : 25 ||| ! !!!:! !:!!||| ! !:!: !!.! !:!!!:!|||..! !! ArgMetSerThrMetThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrS 256590 : CGCATGAGCACGATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACA : 256647 26 : euGlnValSerValGlnLeuAsnValTrpThrLeuLysProIleGlyThrTrpProLy : 44 !.!. !|||:!!||||||||| !||| !|||||||||||||||.!!|||||| erAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProPr 256648 : GCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACC : 256704 45 : sSerProAspArgSerTrpIleGluAlaValCysCysArgThrLeuHisAlaSerCys : 63 ||| !!..!! !!!! :!!||| ! ! !! ! !..!|||:!! ! !||| oSerSerSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCys 256705 : CTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGC : 256761 64 : TyrGlyLeuLeuAlaLeuIleLeuIleProCysGlyMetTyrIleValLeuGluMetL : 83 ||||||! !:!! !!!!! !|||||||||||| !:!::!!:!! !!|||!!: TyrGlySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspA 256762 : TATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACG : 256821 84 : ysAspPheTyrAsnGlnLeuLysLeuAlaSerAlaLeuSerPhePheMetMetSerVa : 102 ! ..!|||||| ::::::||| ... !!:!!||| !!::!!:!!:||| spSerPheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCy 256822 : ACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTG : 256878 103 : lMetLysTyrCysAlaLeuIleValHisGlnAlaAspIleArgLysCysValGluTyr : 121 ! !!.||| !|||:!::!!!!. ! !||||||||| ! |||||||||:!! sAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHis 256879 : TGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCAT : 256935 122 : IleGluGlyAspTrpArgAsnValArgTyrThrGluAspArgAsnIleMetLeuLysA : 141 |||||| !|||||||||! |||||| !:!!|||!:!.!.:!:|||:!!|||| IleGluThrAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysA 256936 : ATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGA : 256995 142 : snAlaAsnPheGlyArgArgLeuValValIleCysGlyPhePheMetTyrGlyGlyIl : 160 |||||!..||||||||| !:!!!.!..!.!!|||!.! !.!!||| ! .!!|||:: snAlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyVa 256996 : ACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgt : 257052 161 : eLeuPheTyrTyrValAlaLeuProLeuThrArgAlaLysIleThrAspGluAspGly : 179 :... ::::::|||:!!! ! !!|||!.!! !! !! !||| !! ! !:!!! ! lPheCysPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGlu 257053 : tttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAA : 257109 180 : AsnMetThrTyrArgArgLeuValTyrProValProLysValIleValAspThrArgA : 199 !..! !! ! ||| !||| ! ! !!||| !||| !:!::!!:!!..! !! ThrThrIleValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspG 257110 : ACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATC : 257169 200 : rgSerProValAsnGluIlePheTyrPheIleGlnLeuLeuSerGlyPheValAlaHi : 218 :!||||||..!||||||||| ! !|||!!:||| !! !|||..!.!!:!!||| lnSerProThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaTh 257170 : AGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGAC : 257226 219 : sAsnIleThrValAlaAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGly : 237 !!.!! !||||||::! !! !.!!|||||||||:!!!!!|||! ||||||! !||| rThrSerThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGly 257227 : TACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGT : 257283 238 : GlnLeuGlnValLeuIleSerTrpMetAsnHisLeuVal<->AspGlyArgGluGluV : 256 |||||| ||||||!!:||||||!!:!...!.!!!||| !!:..!|||.!.... GlnLeuThrValLeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgG 257284 : CAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGgg : 257343 257 : alAsnAspThrValAspGluArgLeuAlaSerMetIleGlnLeuHisValArgIleLe : 275 ... !:!!!:!:!!!.! !!!::!::!!! !|||:!!|||:!:|| luLysThrPheProPheLysGlnIleGlyValIleValGluHisHisLeuArgValLe 257344 : agaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCT : 257400 276 : u{As} >>>> Target Intron 1 >>>> {n}PheIleSerLeuThrGluAsp : 283 |{!.} 760 bp {.}! !:!!! !! ! !.!. u{Ar}++ +-{g}CysValMetTyrArgAsnLeu 257401 : G{AG}gt.........................ac{G}TGCGTTATGTACCGAAACCTG : 258184 284 : LeuLeuHisGluIleSerLeuValGluValValGlyCysThrMetAsnIleCysPheL : 303 |||! !!!..!. !! ! ! ! ! !..!! ! !!!!::!!! : LeuGlnGlnAsnGly***AsnArgThrTyrAsnAsnPheProIleHisSerTyrSerV 258185 : TTGCAACAAAATGGTTAAAATCGTACCTACAATAATTTTCCTATACACAGctattctg : 258244 304 : euGlyTyrTyrCysMetMetGluTrpAspPheLysGlnProValSerGlyLeuThrTy : 322 :: :::||| ......||||||..! :::... ::: :::|| alIlePheTyrTyrPheGlnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerTy 258245 : ttattttttattattttcaggaATGGTCTACGCaagatattcaaaatttgagttcgta : 258301 323 : rLeuIleLeuLeuValSerValThrPheAsnIlePheIlePheCysTyrIleGlyGlu : 341 |!!!!!::!!|||:!!|||::::::||||||||||||:::...||||||||||||||| rPheMetIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGlu 258302 : CTTTATGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAA : 258358 342 : LeuLeuAlaGluGlnThrMetLysVal : 350 :!!|||.!!||||||..! :::::: IleLeuThrGluGlnValProGluIle 258359 : ATATTAACAGAACAGGTACCagagatt : 258387 vulgar: CbirOr14 5 350 . KQ414889.1 256589 258387 + 478 M 245 735 G 0 3 M 25 75 S 0 2 5 0 2 I 0 756 3 0 2 S 1 1 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256590 258387 478 + . gene_id 8 ; sequence CbirOr14 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256590 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256590 257404 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 258164 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258163 258164 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 258165 258387 . + . KQ414889.1 exonerate:protein2genome:local exon 258165 258387 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256590 258387 478 + . alignment_id 8 ; Query CbirOr14 ; Align 256590 6 735 ; Align 257328 251 75 ; Align 258166 277 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 468 Query range: 27 -> 346 Target range: 259775 -> 261844 28 : SerValGlnLeuAsnValTrpThrLeuLysProIleGlyThrTrpProLysSerProA : 47 |||:!!|||!!!||| !||| !|||||||||||||||.!!|||||| ||| !!. SerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerS 259776 : AGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCT : 259833 48 : spArgSerTrpIleGluAlaValCysCysArgThrLeuHisAlaSerCysTyrGlyLe : 66 .!! !!!! ! :!!||| !:!! !! ! !! !||| ! !! !||||||.!! erThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerTh 259834 : CCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTAC : 259890 67 : uLeuAlaLeuIleLeuIleProCysGlyMetTyrIleValLeuGluMetLysAspPhe : 85 !:!! !:!!! !||||||||||||! !:!::!!!!::!!||||||! !:!!..!!!. rIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeu 259891 : CATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTG : 259947 86 : TyrAsnGlnLeuLysLeuAlaSerAlaLeuSerPhePheMetMetSerValMetLysT : 105 |||! :!! !|||:!! !.!! !!|||!!! !!::.!.:!:.!! !!!:!!.| TyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnT 259948 : TACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATT : 260007 106 : yrCysAlaLeuIleValHisGlnAlaAspIleArgLysCysValGluTyrIleGluGl : 124 || .!!|||:!::!!... !||||||! !!..|||||||||:!!:!:|||.. yrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAs 260008 : ACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAA : 260064 125 : yAspTrpArgAsnValArgTyrThrGluAspArgAsnIleMetLeuLysAsnAlaAsn : 143 !|||||||||! !:!!! ! !:!!|||!:!|||:!:||||||!:! !!|||!!. nAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLys 260065 : CGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAA : 260121 144 : PheGlyArgArgLeuValValIleCysGlyPhePheMetTyrGlyGlyIleLeuPheT : 163 ||||||||| !:!!!.!!.! !|||!.! !|||:!! ! ||||||:!!|||! !! PheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysP 260122 : TTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCT : 260181 164 : yrTyrValAlaLeuProLeuThrArgAlaLysIleThrAspGluAspGlyAsnMetTh : 182 :!! !:!!!.! ! !|||!:!! !! ! !||| !! ! !:!!! !!..! !! heCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIl 260182 : TCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGAT : 260238 183 : rTyrArgArgLeuValTyrProValProLysValIleValAspThrArgArgSerPro : 201 ! !!.!! !||| !! ! !!||| !|||! !:!::!!:!!..!!.! !|||||| eValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerPro 260239 : CGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCT : 260295 202 : ValAsnGluIlePheTyrPheIleGlnLeuLeuSerGlyPheValAlaHisAsnIleT : 221 :!!||||||||| !! ! !!:!:|||!!!:!!|||||||||:!!!.!:!!:::! !| MetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerT 260296 : ATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCA : 260355 222 : hrValAlaAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGl : 240 |||||!.! !! !.!!|||||||||:!!|||.!! ||||||||||||||||||.! hrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAs 260356 : CCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAA : 260412 241 : nValLeuIleSerTrpMetAsnHisLeuValAsp<->GlyArgGluGluValAsnAsp : 258 .||||||!!:..!|||!!:!...!.!!!|||||| ..!|||.!...! !!!. ! nValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLys 260413 : CGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAG : 260469 259 : ThrValAspGluArgLeuAlaSerMetIleGlnLeuHisValArgIleLeuAsnPheI : 278 .!! ! !:!!..!:!!!.! !!!::!!:!!! !|||:!!||| !|||!..! AlaProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeuThr***A 260470 : GCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTCACGTAAG : 260529 279 : leSerLeuThrGluAspLeuLeuHisGluIleSerLeuValGluValValGlyCysTh : 297 !! !!!! ! !!!!:!!!.. !!! ! !!!!:!! ..!||||||! !|| spLeuPheAspIleThrPheValArg***ArgIlePheIleIleThrValGlySerTh 260530 : ATTTGTTTGATATTACTTTTGTACGATAAAGGATTTTTATAATTACGGTAGGATCTac : 260586 298 : rMetAsnIleCysPhe{Le} >>>> Target Intron 1 >>>> {u}GlyTyr : 305 |::: ...{:!} 1109 bp {!} ::: rIleIle***LysLeu{Il}++ -+{e}TyrPhe 260587 : tataatttgaaaatta{at}gt.........................tg{a}tatttc : 261719 306 : TyrCysMetMetGluTrpAspPheLysGlnProValSerGlyLeuThrTyrLeuIleL : 325 ::: :::...||||||! ! :!!.!. ! !!:! !! !||||||!!!!!:: PheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheMetM 261720 : tttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCATGA : 261779 326 : euLeuValSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuAl : 344 !!|||:!!:!!:!! !||||||:!!||||||.!!|||||||||||||||:!!|||.! etLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLeuTh 261780 : TGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACTAAC : 261836 345 : aGluGln : 346 !|||||| rGluGln 261837 : GGAACAG : 261844 vulgar: CbirOr14 27 346 . KQ414889.1 259775 261844 + 468 M 224 672 G 0 3 M 51 153 S 0 2 5 0 2 I 0 1105 3 0 2 S 1 1 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259776 261844 468 + . gene_id 9 ; sequence CbirOr14 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259776 260605 . + . KQ414889.1 exonerate:protein2genome:local exon 259776 260605 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260606 260607 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 260606 261714 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261713 261714 . + . intron_id 0 ; splice_site "tg" KQ414889.1 exonerate:protein2genome:local cds 261715 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261715 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259776 261844 468 + . alignment_id 9 ; Query CbirOr14 ; Align 259776 28 672 ; Align 260451 252 153 ; Align 261716 304 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 458 Query range: 23 -> 280 Target range: 232450 -> 233221 24 : AspLeuGlnValSerValGlnLeuAsnValTrpThrLeuLysProIleGlyThrTrpP : 43 |||! !:!! !|||:!!|||:!!||| !||| !|||! !|||!!:|||.!!|||| AspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpP 232451 : GACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGC : 232508 44 : roLysSerProAspArgSerTrpIleGluAlaValCysCysArgThrLeuHisAlaSe : 62 ||::: ! !!!!:! !||| ! !:!! !:!! !...!:! !|||... !!! roArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuTh 232509 : CGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCAC : 232565 63 : rCysTyrGlyLeuLeuAlaLeuIleLeuIleProCysGlyMetTyrIleValLeuGlu : 81 !|||:!!..!|||:!! !! ! :!!:!!|||||| !:!!!:!|||:!!!!!||| rCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGlu 232566 : CTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAA : 232622 82 : MetLysAspPheTyrAsnGlnLeuLysLeuAlaSerAlaLeuSerPhePheMetMetS : 101 ! !..!.!. ! .!.::!:!!|||! ! !.!! !!:!!||| !|||:!!|||. AspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetG 232623 : GACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGG : 232682 102 : erValMetLysTyrCysAlaLeuIleValHisGlnAlaAspIleArgLysCysValGl : 120 !!! !:!!!!.||||||..!|||:!:!.! ! ! !||||||! ! ! |||||||| lyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGl 232683 : GTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGA : 232739 121 : uTyrIleGluGlyAspTrpArgAsnValArgTyrThrGluAspArgAsnIleMetLeu : 139 | ! :!::!! !|||||||||||||||!:! ! !!! !!|||:!!:!:|||||| uGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeu 232740 : ACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTG : 232796 140 : LysAsnAlaAsnPheGlyArgArgLeuValValIleCysGlyPhePheMetTyrGlyG : 159 |||||||||!!..!!|||||| !:!!!.! !|||..!!.!|||! !|||:!! !| LysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrG 232797 : AAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCG : 232856 160 : lyIleLeuPheTyrTyrValAlaLeuProLeuThrArgAlaLysIleThrAspGluAs : 178 ||:!! !! ! !! ! :!!!.! ! !||| !! !::!! !.!! !! ! !:! lyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAs 232857 : GTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAA : 232913 179 : pGlyAsnMetThrTyrArgArgLeuValTyrProValProLysValIleValAspThr : 197 !! !!:! :!! !! !||| !! ! !! !! !! ! !:!::!!|||||| nGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThr 232914 : CGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACC : 232970 198 : ArgArgSerProValAsnGluIlePheTyrPheIleGlnLeuLeuSerGlyPheValA : 217 ||| !||||||..!|||||||||.!.!:! !!:!!|||! !||||||||||||:!!! ArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleV 232971 : AGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCG : 233030 218 : laHisAsnIleThrValAlaAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCy : 236 .!:!!::!:!!||||||!.!||||||||||||!.!|||:!!||||||||||||||||| alAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCy 233031 : TGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTG : 233087 237 : sGlyGlnLeuGlnValLeuIleSerTrpMetAsnHisLeuValAspGlyArgGluGlu : 255 ||||||||||.!.|||:!!!!:||| :!!:!! !!|||||||||!.!!:!! !:!! sGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGlyGln 233088 : CGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAG : 233144 256 : ValAsnAspThrValAspGluArgLeuAlaSerMetIleGlnLeuHisValArgIleL : 275 ! !.!. ..!!.!.!...!!:!|||!.!! !!!::!::!!! !|||:!!|||! !| GluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrL 233145 : GAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACAT : 233204 276 : euAsnPheIleSerLeu : 280 ||!..!:!:!:|||:!! euArgTyrLeuSerVal 233205 : TAAGGTATTTGTCTGTG : 233221 vulgar: CbirOr14 23 280 . KQ414889.1 232450 233221 + 458 M 257 771 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232451 233221 458 + . gene_id 10 ; sequence CbirOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232451 233221 . + . KQ414889.1 exonerate:protein2genome:local exon 232451 233221 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232451 233221 458 + . alignment_id 10 ; Query CbirOr14 ; Align 232451 24 771 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 423 Query range: 27 -> 275 Target range: 262852 -> 263599 28 : SerValGlnLeuAsnValTrpThrLeuLysProIleGlyThrTrpProLysSerProA : 47 |||:!!|||:!!||| !||| !|||||||||||||||.!!|||||| !||| !!. SerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerAlaS 262853 : AGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCGCCT : 262910 48 : spArgSerTrpIleGluAlaValCysCysArgThrLeuHisAlaSerCysTyrGlyLe : 66 ..! !||| ! !!:||| !:!! !!! ! !||| !!.! !|||||| !!|| erIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCysLe 262911 : CGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTGTCT : 262967 67 : uLeuAlaLeuIleLeuIleProCysGlyMetTyrIleValLeuGluMetLysAspPhe : 85 |:!! !! !! !:!!||||||! ! !:!::!!|||||||||||| :!!:!!||| uIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsnPhe 262968 : CATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAATTTC : 263024 86 : TyrAsnGlnLeuLysLeuAlaSerAlaLeuSerPhePheMetMetSerValMetLysT : 105 :!!! :!!|||:!!:!! !.!! !!|||.!! !::.!.:!:.!!:!!!!:!!.| HisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleAsnT 263025 : CATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCAATT : 263084 106 : yrCysAlaLeuIleValHisGlnAlaAspIleArgLysCysValGluTyrIleGluGl : 124 || ! !|||:!::!!|||... !||||||!:! ||||||:!!:!!:!::!!! yrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGlnGl 263085 : ACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCAGGA : 263141 125 : yAspTrpArgAsnValArgTyrThrGluAspArgAsnIleMetLeuLysAsnAlaAsn : 143 !|||||| !!! !|||! ! !||||||!:!..!||||||||||||||||||!!. uAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAlaLys 263142 : AGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCGAAA : 263198 144 : PheGlyArgArgLeuValValIleCysGlyPhePheMetTyrGlyGlyIleLeuPheT : 163 !:!|||||| !:!!!.!!.! !|||!.!.!!|||||| ! !.!!|||:!!! ! TyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetCysL 263199 : TACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGTGCA : 263258 164 : yrTyrValAlaLeuProLeuThrArgAlaLysIleThrAspGluAspGlyAsnMetTh : 182 ! ! !:!!!.! ! !!!!!|||! ! ! !||| !|||! :!!! !!.!! ! ysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrArgIl 263259 : AGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAGAAT : 263315 183 : rTyrArgArgLeuValTyrProValProLysValIleValAspThrArgArgSerPro : 201 ! |||! !||| !! !|||||| !|||! !|||:!! ..! !! !!:!||| eLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThrAsnPro 263316 : TCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAATCCG : 263372 202 : ValAsnGluIlePheTyrPheIleGlnLeuLeuSerGlyPheValAlaHisAsnIleT : 221 ..!|||||||||||| ! !! |||!!!||||||||||||:!!!.! ! ! !| ThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaThrT 263373 : ACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGACAA : 263432 222 : hrValAlaAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGl : 240 |||||!.!|||! !|||:!!.!!|||:!!!!!||| ||||||||||||||||||.! hrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLeuAs 263433 : CTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTTGAA : 263489 241 : nValLeuIleSerTrpMetAsnHisLeuValAsp<->GlyArgGluGluValAsnAsp : 258 .||||||!!:||||||!!:!...!.!!!|||:!! ..!|||!!:||| !!!.:!! nValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLysAsn 263490 : CGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAGAAT : 263546 259 : ThrValAspGluArgLeuAlaSerMetIleGlnLeuHisValArgIleLeu : 275 ! ! ! ..!:!!!.! !!!::!!:!!! !|||:!!|||:!!||| LeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeu 263547 : CTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTG : 263599 vulgar: CbirOr14 27 275 . KQ414889.1 262852 263599 + 423 M 224 672 G 0 3 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262853 263599 423 + . gene_id 11 ; sequence CbirOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262853 263599 . + . KQ414889.1 exonerate:protein2genome:local exon 262853 263599 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262853 263599 423 + . alignment_id 11 ; Query CbirOr14 ; Align 262853 28 672 ; Align 263528 252 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 401 Query range: 27 -> 275 Target range: 266640 -> 267387 28 : SerValGlnLeuAsnValTrpThrLeuLysProIleGlyThrTrpProLysSerProA : 47 |||:!!||||||||| !||| !|||||||||||||||.!!|||||| !! ! !! SerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerL 266641 : AGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCAC : 266698 48 : spArgSerTrpIleGluAlaValCysCysArgThrLeuHisAlaSerCysTyrGlyLe : 66 !! !||| :!!||| !:!! !! ! !.!!||| !!.!! !|||||| !!! euThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSe 266699 : TCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTC : 266755 67 : uLeuAlaLeuIleLeuIleProCysGlyMetTyrIleValLeuGluMetLysAspPhe : 85 !:!! !!!!! !:!!||||||||| !.!.:!!:!!||||||||| :!!..!.!! rIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIle 266756 : CATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATC : 266812 86 : TyrAsnGlnLeuLysLeuAlaSerAlaLeuSerPhePheMetMetSerValMetLysT : 105 !!..:!!:!!|||:!! !.!! !!|||||| !!::.!.:!:.!!! !!!:!!.| ArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnT 266813 : CGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACT : 266872 106 : yrCysAlaLeuIleValHisGlnAlaAspIleArgLysCysValGluTyrIleGluGl : 124 || !.!!|||:!::!!!.!... !!!:|||||| |||||||||:!!!!::!! yrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnTh 266873 : ACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAAC : 266929 125 : yAspTrpArgAsnValArgTyrThrGluAspArgAsnIleMetLeuLysAsnAlaAsn : 143 !|||||||||! !|||! ! !!||||||!:!.!.:!:|||||||||||||||!.. rAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArg 266930 : AGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGG : 266986 144 : PheGlyArgArgLeuValValIleCysGlyPhePheMetTyrGlyGlyIleLeuPheT : 163 .!!|||||| !:!!!.!:!!.!!|||!.! |||||| ! !!|||:!!||| !| IleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyT 266987 : ATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCT : 267046 164 : yrTyrValAlaLeuProLeuThrArgAlaLysIleThrAspGluAspGlyAsnMetTh : 182 ||! !||| ! ! !!!!!|||! ! !! :!: !! !! :!!! !!.!! !! yrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIl 267047 : ACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGAT : 267103 183 : rTyrArgArgLeuValTyrProValProLysValIleValAspThrArgArgSerPro : 201 ! !.!! !||| !! ! !!||| !||| !!!::!!! ..! !! !|||||| eValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerPro 267104 : CGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCG : 267160 202 : ValAsnGluIlePheTyrPheIleGlnLeuLeuSerGlyPheValAlaHisAsnIleT : 221 ..!||||||||| !! ! !! !|||!!!:!!|||||||||:!!!.!:!!:::! !. ThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerV 267161 : ACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCG : 267220 222 : hrValAlaAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGl : 240 .!|||!.!|||! !.!!|||||||||:!!!!!||| ||||||||||||||||||.. alValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSe 267221 : TCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAG : 267277 241 : nValLeuIleSerTrpMetAsnHisLeuValAspGlyArgGluGluValAsnAspThr : 259 .||||||!!:! !|||!!:!!..!.!!!|||:!! !! !..!!!: !||| ! !.! rValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsn 267278 : CGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAAC : 267334 260 : Val<->AspGluArgLeuAlaSerMetIleGlnLeuHisValArgIleLeu : 275 ||| !!!:!:!:!!!.! !:!::!!:!!! !|||:!!|||:!!||| ValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu 267335 : GTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG : 267387 vulgar: CbirOr14 27 275 . KQ414889.1 266640 267387 + 401 M 233 699 G 0 3 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266641 267387 401 + . gene_id 12 ; sequence CbirOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266641 267387 . + . KQ414889.1 exonerate:protein2genome:local exon 266641 267387 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266641 267387 401 + . alignment_id 12 ; Query CbirOr14 ; Align 266641 28 699 ; Align 267343 261 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 377 Query range: 27 -> 275 Target range: 274386 -> 275133 28 : SerValGlnLeuAsnValTrpThrLeuLysProIleGlyThrTrpProLysSerProA : 47 |||:!!||||||||| !||| !|||||||||||||||.!!|||||| !:!! !! SerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaSerP 274387 : AGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGC : 274444 48 : spArgSerTrpIleGluAlaValCysCysArgThrLeuHisAlaSerCysTyrGlyLe : 66 !! !!!! .!!||| !:!! !! !.! ||| |||||| !!!! roThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCysPh 274445 : CCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTGCTT : 274501 67 : uLeuAlaLeuIleLeuIleProCysGlyMetTyrIleValLeuGluMetLysAspPhe : 85 !:!! !! !! !:!!|||||| !! !.!.:!!|||:!!|||! ! :!!..!.!! eIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGluSerLeu 274502 : CATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGTCTC : 274558 86 : TyrAsnGlnLeuLysLeuAlaSerAlaLeuSerPhePheMetMetSerValMetLysT : 105 :!! :!!||||||||| !.!! !!|||.!! !!::.!.!!:.!!! !!!:!!.| HisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnT 274559 : CATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATT : 274618 106 : yrCysAlaLeuIleValHisGlnAlaAspIleArgLysCysValGluTyrIleGluGl : 124 || !.!!|||:!::!!!.!... !!!:|||||| |||||||||:!!!!::!! yrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnTh 274619 : ACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAAC : 274675 125 : yAspTrpArgAsnValArgTyrThrGluAspArgAsnIleMetLeuLysAsnAlaAsn : 143 !|||||||||! !|||! ! !!||||||!:!.!.:!:|||||||||||||||!!. rAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsnAlaLys 274676 : AGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAG : 274732 144 : PheGlyArgArgLeuValValIleCysGlyPhePheMetTyrGlyGlyIleLeuPheT : 163 .!!|||||| !:!!!.!:!!.!!|||!.! |||||| ! !!|||:!!|||! !| IleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuCysT 274733 : ATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTT : 274792 164 : yrTyrValAlaLeuProLeuThrArgAlaLysIleThrAspGluAspGlyAsnMetTh : 182 ||! !||| ! ! !!!!!|||! ! !! :!! !! ! !:!!! !!.!! || yrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrArgTh 274793 : ATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAAC : 274849 183 : rTyrArgArgLeuValTyrProValProLysValIleValAspThrArgArgSerPro : 201 | !.!! !||| !! ! !!.! !||| !||||||! ..! !! !|||||| rValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThrSerPro 274850 : CGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCG : 274906 202 : ValAsnGluIlePheTyrPheIleGlnLeuLeuSerGlyPheValAlaHisAsnIleT : 221 ..!||||||||| !! ! ! |||!!!:!!|||||||||:!!!.!:!!:::! !. ThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerSerA 274907 : ACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCG : 274966 222 : hrValAlaAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGl : 240 !!|||!.!|||! !.!!|||||||||:!!!!!||| ||||||! !|||||||||.. laValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSe 274967 : CGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAG : 275023 241 : nValLeuIleSerTrpMetAsnHisLeuValAsp<->GlyArgGluGluValAsnAsp : 258 .||||||!!:! !|||!!:!.!.!.!!!|||:!! ..!|||!!:::: ...::: rValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsnLysAsn 275024 : CGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaaaat : 275080 259 : ThrValAspGluArgLeuAlaSerMetIleGlnLeuHisValArgIleLeu : 275 ... .....!:!!!.! !:!::!!:!!! !|||:!!|||:!!||| ValTyrPheSerGluIleGlyValValValGluHisHisLeuArgValLeu 275081 : gtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTC : 275133 vulgar: CbirOr14 27 275 . KQ414889.1 274386 275133 + 377 M 224 672 G 0 3 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274387 275133 377 + . gene_id 13 ; sequence CbirOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274387 275133 . + . KQ414889.1 exonerate:protein2genome:local exon 274387 275133 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274387 275133 377 + . alignment_id 13 ; Query CbirOr14 ; Align 274387 28 672 ; Align 275062 252 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 342 Query range: 27 -> 285 Target range: 236855 -> 237626 28 : SerValGlnLeuAsnValTrpThrLeuLysProIleGlyThrTrpProLysSerProA : 47 |||:!!|||! !||| !|||.!!:!!||| !|||||||||||||||:!!! ! SerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPhe---- 236856 : AGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTC---- : 236910 48 : spArgSerTrpIleGluAlaValCysCysArgThrLeuHisAlaSerCysTyrGlyLe : 66 !||| :!!||| ! ! !! !|||! !|||:!!!.!! !|||||| ! --SerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAl 236911 : --TCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGC : 236964 67 : uLeuAlaLeuIleLeuIleProCysGlyMetTyrIleValLeuGluMetLysAspPhe : 85 !:!! !!!! :!!|||||||||..!:!!:!!:!!:!!||||||! ! !||| aIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPhe 236965 : AATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTC : 237021 86 : TyrAsnGlnLeuLysLeuAlaSerAlaLeuSerPhePheMetMetSerValMetLysT : 105 |||!..:!!:!!|||:!! !.!!:!!|||||| !!:::!!.!.!!!:!!!!:!..| TyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerT 237022 : TACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTT : 237081 106 : yrCysAlaLeuIleValHisGlnAlaAspIleArgLysCysValGluTyrIleGluGl : 124 || ! !|||:!::!!!..!:: ! !|||||| ! ! ! !!.!.:!!!!:||| yrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluTh 237082 : ACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGAC : 237138 125 : yAspTrpArgAsnValArgTyrThrGluAspArgAsnIleMetLeuLysAsnAlaAsn : 143 !|||||||||!....! ||| :::...:::||||||||| !!|||!!. rAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLys 237139 : CGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAA : 237195 144 : PheGlyArgArgLeuValValIleCysGlyPhePheMetTyrGlyGlyIleLeuPheT : 163 |||.!!||| ! !!.!:!! !||| !.!!|||!!::!!|||||||||||| | PheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyT 237196 : TTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGAT : 237255 164 : yrTyrValAlaLeuProLeuThrArgAlaLysIleThrAspGluAspGlyAsnMetTh : 182 ||! !||| ! ! !!! !|||! ! ! :!!..!! !! !:!! !!.!! !! yrCysValMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIl 237256 : ATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGAT : 237312 183 : rTyrArgArgLeuValTyrProValProLysValIleValAspThrArgArgSerPro : 201 !! ||| !||| !! |||:!! !|||! !:!!:!! ..! !! !!:! !! eLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThr 237313 : CTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACT : 237369 202 : ValAsnGluIlePheTyrPheIleGlnLeuLeuSerGlyPheValAlaHisAsnIleT : 221 :!!|||!!:||| !! !!!. !|||!!!||||||||||||:!!|||:!!|||! !. MetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerA 237370 : ATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTG : 237429 222 : hrValAlaAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGl : 240 !!:!!::!!.! .!!|||.!!::! !|||.!! ||||||! !|||||||||.. laIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSe 237430 : CGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAG : 237486 241 : n<->ValLeuIleSerTrpMetAsnHisLeuValAspGlyArgGluGluValAsnAsp : 258 . |||:!!:!:||| :!! !:!! !!!:!.!|||.....!! !!!.||| rValValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAsp 237487 : CGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGAC : 237543 259 : ThrValAspGluArgLeuAlaSerMetIleGlnLeuHisValArgIleLeuAsnPheI : 278 ! ! !!!:..!:!! !!!!!!!::!::!! !|||:!!|||:!:|||!!.! : AspHisPheAspGluIleProThrIleValGluGluHisLeuArgValLeuLys***V 237544 : GATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAG : 237603 279 : leSerLeuThrGluAspLeuLeu : 285 !!!!!||| !!!: :!!||| alCysLeuLeuAspLeuIleLeu 237604 : TATGTTTGTTGGATTTGATTTTG : 237626 vulgar: CbirOr14 27 285 . KQ414889.1 236855 237626 + 342 M 18 54 G 2 0 M 193 579 G 0 3 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236856 237626 342 + . gene_id 14 ; sequence CbirOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236856 237626 . + . KQ414889.1 exonerate:protein2genome:local exon 236856 237626 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236856 237626 342 + . alignment_id 14 ; Query CbirOr14 ; Align 236856 28 54 ; Align 236910 48 579 ; Align 237492 241 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 321 Query range: 14 -> 275 Target range: 289699 -> 290479 15 : ArgIleTyrAsnArgAspTyrLysAspAspLeuGlnValSerValGlnLeuAsnValT : 34 ||| ! ||| ! !|||:!! |||:!!!:: !!!! !!:!!||| ! !| ArgProSerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisT 289700 : CGTCCGTCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATT : 289757 35 : rpThrLeuLysProIleGlyThrTrpProLysSerProAspArg<->SerTrpIleGl : 52 ||! !|||||||||||||||! !!::||| ! !..!||| ||| ! !|| rpIleLeuLysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGl 289758 : GGATCTTGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGA : 289814 53 : uAlaValCysCysArgThrLeuHisAlaSerCysTyrGlyLeuLeuAlaLeuIleLeu : 71 | !..!...! ! !||| ! ! !|||! !..!:!!||| !!!!|||:!! uArgThrAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIle 289815 : ACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATA : 289871 72 : IleProCysGlyMetTyrIleValLeuGluMetLysAspPheTyrAsnGlnLeuLysL : 91 :!!|||! !.!! :!!:!!:!!!!!... !!.|||.!. !!!.. :!!||| ValProPheSerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysA 289872 : GTACCGTTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGA : 289931 92 : euAlaSerAlaLeuSerPhePheMetMetSerValMetLysTyrCysAlaLeuIleVa : 110 ! !.!! !!|||!!!|||! !:!!! !!! !!.!.||||||||| !!!!! !:! snLeuGlyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMe 289932 : ATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCAT : 289988 111 : lHisGlnAlaAspIleArgLysCysValGluTyrIleGluGlyAspTrpArgAsnVal : 129 ! ! :!!! ||| !!:::||||||:!!:!!|||||| !!||||||!:!! :!! tLysGlySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeu 289989 : GAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTG : 290045 130 : ArgTyrThrGluAspArgAsnIleMetLeuLysAsnAlaAsnPheGlyArgArgLeuV : 149 ||| !! !!!: !!||| !|||||||||!:! !!!.!!...!..!!|||!.!|||: ArgAspGluAspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuI 290046 : CGTGACGAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCA : 290105 150 : alValIleCysGlyPhePheMetTyrGlyGlyIleLeuPheTyrTyrValAlaLeuPr : 168 !! !:!:|||!.!.!!|||:!!||| !||| !|||! !||| !!..!!.!:!!|| leLysLeuCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIlePr 290106 : TAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACC : 290162 169 : oLeuThrArgAlaLysIleThrAspGluAspGlyAsnMetThrTyrArgArgLeuVal : 187 |||| ! ! !||| ..!! !:!!||||||:!!||| !|||! !|||..! oLeuPheSerLysLys------SerValAsnGlyAsnValThrIleArgProLeuThr 290163 : GTTGTTCTCGAAGAAG------AGCGTGAACGGTAACGTGACTATCAGACCTCTAACT : 290213 188 : TyrProValProLysValIleValAspThrArgArgSerProValAsnGluIlePheT : 207 ||||||! ! !:!!! !.!! !!|||..!!:!!:!||||||!.! !!|||||| !!! TyrProGlyTyrGluGluPhePheAspValGlnLysSerProAlaTyrGluIleValP 290214 : TATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCT : 290273 208 : yrPheIleGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValAlaAlaCysGl : 226 :!! !!!:!!.! !:!!! !! !.!.:!!.!! |||||||||:!!||||||! !.! heCysMetHisCysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSe 290274 : TCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAG : 290330 227 : yLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnValLeuIleSerTrp : 245 !|||.!!.!!:!!!!!|||! |||.!!|||||||||:!!:!!:!!! !! !!! !! rLeuThrThrIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArg 290331 : TTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGG : 290387 246 : MetAsnHisLeuValAspGlyArgGluGluValAsnAspThrValAspGluArgLeuA : 265 :!!.!. !!|||..! ! !! !! ! !:!!.!. ! !|||..!!!:||||||| LeuGluAspLeuThrLysArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuA 290388 : CTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGG : 290447 266 : laSerMetIleGlnLeuHisValArgIleLeu : 275 || !:!::!:... !||||||..!|||||| laValValValSerGlyHisValGluIleLeu 290448 : CGGTTGTTGTGAGCGGTCACGTGGAGATCTTG : 290479 vulgar: CbirOr14 14 275 . KQ414889.1 289699 290479 + 321 M 34 102 G 0 3 M 125 375 G 2 0 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289700 290479 321 + . gene_id 15 ; sequence CbirOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289700 290479 . + . KQ414889.1 exonerate:protein2genome:local exon 289700 290479 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289700 290479 321 + . alignment_id 15 ; Query CbirOr14 ; Align 289700 15 102 ; Align 289805 49 375 ; Align 290180 176 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 308 Query range: 307 -> 414 Target range: 224317 -> 224770 308 : MetMetGluTrpAspPheLysGlnProValSerGlyLeuThrTyrLeuIleLeuLeuV : 327 .!....||||||... ....!. !..!|||!.!:!!||||||!!!|||||||||: PheGlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuM 224318 : TTTCaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCA : 224375 328 : alSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuAlaGluGl : 346 !!|||:::|||||||||||||||||||||||||||||||||||||||:!!|||||||| etSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl 224376 : TGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAca : 224432 347 : n >>>> Target Intron 1 >>>> ThrMetLysValCysGluSerSerTyrM : 356 | 65 bp |||::: ::! !||||||| n++ ++CysGluLysIleGlyGlnValSerTyrM 224433 : ggt.........................agtgtgaaaaaattggacaAGTGTCGTACA : 224527 357 : etIleAspTrpTyrArgLeuProLysLysLysGlyLeuAlaIleIleLeuIleIleCy : 375 |||||||||||||||||||| !! !!!.||| !|||..! !||||||||||||.. etIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAl 224528 : TGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGC : 224584 376 : sMetSerAsnAlaThrThrArgLeuThrAlaGlyAsnIleIleGluLeuSerIleSer : 394 .|||||||||:!!:!!! !!:!|||||||||||||||!!::!!||||||!!!:!!!!! aMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThr 224585 : GATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACC : 224641 395 : ArgPheGlyAsp >>>> Target Intron 2 >>>> ValIleLysSerSerVa : 404 ! !||||||||| 67 bp |||:!!|||!!!:!!|| ThrPheGlyAsp++ ++ValValLysThrAlaVa 224642 : ACTTTCGGTGACgt.........................agGTTGTCAAGACAGCTGT : 224738 405 : lValTyrLeuAsnMetLeuArgThrPheThr : 414 |!.!!:!||||||:!!|||||||||!!.||| lAlaPheLeuAsnValLeuArgThrLeuThr 224739 : CGCATTTTTGAACGTGTTACGAACATTGact : 224770 vulgar: CbirOr14 307 414 . KQ414889.1 224317 224770 + 308 M 39 117 5 0 2 I 0 61 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224318 224770 308 + . gene_id 16 ; sequence CbirOr14 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224318 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224318 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224655 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224655 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224656 224657 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224656 224722 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 224721 224722 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 224723 224770 . + . KQ414889.1 exonerate:protein2genome:local exon 224723 224770 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224318 224770 308 + . alignment_id 16 ; Query CbirOr14 ; Align 224318 308 117 ; Align 224500 347 156 ; Align 224723 399 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 275 Query range: 125 -> 275 Target range: 304425 -> 304866 126 : TrpArgAsnValArgTyrThrGluAspArgAsnIleMetLeuLysAsnAlaAsnPheG : 145 !::..!.!.|||..!! ! !..!||||||.!.!!:||||||||| !!!.!.!..!.| TyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetG 304426 : TATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGG : 304483 146 : lyArgArgLeuValValIleCysGlyPhePheMetTyrGlyGlyIleLeuPheTyrTy : 164 |||||!.!|||..!:!!||||||!.!.!.||||||||| !||| ! !.!!|||:! lyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHi 304484 : GTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCA : 304540 165 : rValAlaLeuProLeuThrArgAlaLysIleThrAspGluAspGlyAsnMetThrTyr : 183 !..!!.!:!!! !!!!.!!! !!.!! ! !..!|||||| !||| ||| ! sThrValMetGlnPheAlaThrGlyThrTyrValAspGlu---TyrAsnArgThrIle 304541 : CACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAG---TATAATCGTACGATT : 304594 184 : ArgArgLeuValTyrProValProLysValIleValAspThrArgArgSerProValA : 203 !:!! !||||||||||||..! !!..!.!:!! !!|||..!!:!! !||||||:!! LysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIleT 304595 : AAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTT : 304654 204 : snGluIlePheTyrPheIleGlnLeuLeuSerGlyPheValAlaHisAsnIleThrVa : 222 !!|||:!: !!||||||:!!!!.! !:!!!!!|||!:!||| !:!!::!||||||!. yrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThrAl 304655 : ACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGC : 304711 223 : lAlaAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnVal : 241 !!.!|||||||||||||||||||||!!!|||! |||||||||||||||:!!.!.:!! aGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIle 304712 : TGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATC : 304768 242 : LeuIleSerTrpMetAsnHisLeuValAspGlyArgGluGluValAsnAspThrValA : 261 :!!!!:||| ! :!!..! !!||||||:!!.!!!:!||| :::..! !:!!| ValMetSerArgLeuGlyAspLeuValAsnSerLysGlu------SerSerAspLeuA 304769 : GTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAA------TCATCTGATTTAG : 304822 262 : spGluArgLeuAlaSerMetIleGlnLeuHisValArgIleLeu : 275 ||:!!|||||| !..!!!::!!:!!! !|||:!!||||||||| spLysArgLeuIleGluIleValGluHisHisLeuArgIleLeu 304823 : ATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTA : 304866 vulgar: CbirOr14 125 275 . KQ414889.1 304425 304866 + 275 M 52 156 G 1 0 M 76 228 G 2 0 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304426 304866 275 + . gene_id 17 ; sequence CbirOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304426 304866 . + . KQ414889.1 exonerate:protein2genome:local exon 304426 304866 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 304426 304866 275 + . alignment_id 17 ; Query CbirOr14 ; Align 304426 126 156 ; Align 304582 179 228 ; Align 304810 257 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 265 Query range: 274 -> 399 Target range: 234518 -> 235147 275 : LeuAsnPheIleSerLeuThrGluAspLeuLeuHisGluIleSerLeuValGluValV : 294 !!!!:!|||||| !! !! !|||:!!:!!:!!:!! !|||!!!|||||||||:!!| PheSerPheIleArgAsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuV 234519 : TTCAGTTTTATACGGAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGG : 234576 295 : alGlyCysThrMetAsnIleCysPheLeuGlyTyrTyrCysMetMet >>>> Targ : 310 |||||||||||:!!|||!!:|||.!.|||! !||||||! :!:! ! alGlyCysThrLeuAsnMetCysMetLeuGluTyrTyrLeuLeuThr++ 234577 : TAGGATGCACGTTGAACATGTGCATGCTCGAGTATTATTTACTCACGgt......... : 234626 311 : et Intron 1 >>>> GluTrpAspPheLysGlnProValSerGlyLeuThrTyrL : 323 189 bp ||| |||... ... !:!!|||: ++Glu---------LysSerLysGluLysLeuAlaSerTyrV 234627 : ................agGAA---------AAgtcgaaggaaaaattagCTTCATACG : 234843 324 : euIleLeuLeuValSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluLe : 342 !!|||:!!! !||||||:!!|||||||||||||||||||||||||||||||||||| alIleValTyrValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluTh 234844 : TCATCGTGTACGTGTCCATGACATTtaatatattcatattttgttACATCGGAGAGAC : 234900 343 : uLeuAlaGluGln >>>> Target Intron 2 >>>> ThrMetLysValCysG : 352 !|||.!!|||||| 74 bp !! |||||| ! | rLeuThrGluGln++ ++CysThrLysValGlyG 234901 : GCTTACAGAGCAGgt.........................agTGTACCAAAGTCGGAG : 235004 353 : luSerSerTyrMetIleAspTrpTyrArgLeuProLysLysLysGlyLeuAlaIleIl : 371 ||!.! !||||||! !!!:||||||||||||||| ! |||! !.!|||!.!:!::! luLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuVa 235005 : AAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGT : 235061 372 : eLeuIleIleCysMetSerAsnAlaThrThrArgLeuThrAlaGlyAsnIleIleGlu : 390 !:!!||||||! !! !|||!:! !..!! !!:!:!!|||||||||!!..!!:!!:!! lMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheLeuGln 235062 : AATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAA : 235118 391 : LeuSerIleSerArgPheGlyAspVal : 399 :!!|||:!!:!!! !|||||||||||| MetSerValAlaThrPheGlyAspVal 235119 : ATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: CbirOr14 274 399 . KQ414889.1 234518 235147 + 265 M 35 105 5 0 2 I 0 185 3 0 2 M 1 3 G 3 0 M 33 99 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234519 235147 265 + . gene_id 18 ; sequence CbirOr14 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234519 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234519 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234519 235147 265 + . alignment_id 18 ; Query CbirOr14 ; Align 234519 275 105 ; Align 234813 310 3 ; Align 234816 314 99 ; Align 234989 347 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 260 Query range: 309 -> 399 Target range: 219328 -> 219671 310 : GluTrpAspPheLysGlnProValSerGlyLeuThrTyrLeuIleLeuLeuValSerV : 329 |||||| ! ! !!..!. !..!|||!.!:!!||||||:!!|||||||||:!!|||: GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 330 : alThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuAlaGluGln >>> : 347 !:||||||||||||||||||||||||||||||||||||:!!:!!||||||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln++ 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAggt... : 219442 348 : > Target Intron 1 >>>> ThrMetLysValCysGluSerSerTyrMetIleA : 358 73 bp |||::: ||| ||||||||||||! ++CysArgLysIleGlyGluMetSerTyrMetIleG 219443 : ......................agTGtaggaaaattggagaaatgtCGTACATGATCG : 219546 359 : spTrpTyrArgLeuProLysLysLysGlyLeuAlaIleIleLeuIleIleCysMetSe : 377 !:|||||||||||| !! !|||||| !||| !! !:!!|||! !|||..!||||| luTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaMetSe 219547 : AATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTATGTC : 219603 378 : rAsnAlaThrThrArgLeuThrAlaGlyAsnIleIleGluLeuSerIleSerArgPhe : 396 ||||:!!:!!! !!:!|||||||||||||||!!::!!|||||||||||||||! !||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPhe 219604 : GAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCACTTTT : 219660 397 : GlyAspVal : 399 !|||||| ThrAspVal 219661 : ACCGACGTG : 219671 vulgar: CbirOr14 309 399 . KQ414889.1 219328 219671 + 260 M 37 111 5 0 2 I 0 69 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219671 260 + . gene_id 19 ; sequence CbirOr14 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219671 260 + . alignment_id 19 ; Query CbirOr14 ; Align 219329 310 111 ; Align 219513 347 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 257 Query range: 179 -> 360 Target range: 300189 -> 301839 180 : AsnMetThrTyrArgArgLeuValTyrProValProLysValIleValAspThrArgA : 199 ||| ||||||!:!! !|||!.!||||||! ! ! ! !.!!:!!||||||!:!! AsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnT 300190 : AATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAA : 300247 200 : rgSerProValAsnGluIlePheTyrPheIleGlnLeuLeuSerGlyPheValAlaHi : 218 !||||||..! !!|||||| :::|||...... .!!:!!!.!.!.:!! !:! hrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTy 300248 : CCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTA : 300304 219 : sAsnIleThrValAlaAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGly : 237 !|||:!:|||..!||||||! !.!!|||||||||:!!!!!!.!! ||| !|||||| rAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGly 300305 : CAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGA : 300361 238 : GlnLeuGlnValLeuIleSerTrpMetAsnHisLeuValAspGlyArgGluGluValA : 257 |||:!!|||:!!! !!!::!! ! :!!.!. !!||||||!!: !!! !! !||| !: GlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrGlyGluLysA 300362 : CAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGGGAGAGAAGG : 300421 258 : snAspThrValAspGluArgLeuAlaSerMetIleGlnLeuHisValArgIleLeu{A : 276 !!||| ! !||| |||!.! !!!::!!!:! !||||||!:!:!!|||{! spAspGlyProAspPro---LeuValValIleValArgAspHisValLysValLeu{A 300422 : ACGACGGTCCTGATCCT---TTGGTCGTTATCGTTCGAGATCACGTGAAGGTTTTA{A : 300475 277 : s} >>>> Target Intron 1 >>>> {n}PheIleSerLeuThrGluAspLeu : 284 .} 1110 bp {.} ! !!!! ! !... ! ! ! r}++ ++{g}AspProCysSerPheArg***Pro 300476 : G}gt.........................ag{A}GACCCGTGTTCCTTCCGTTAGCCA : 301609 285 : LeuHisGluIleSerLeuValGluValValGlyCysThrMetAsnIleCysPheLeuG : 304 ! !.!.:!!!!! ||| |||:!:||| ! |||||| ThrPheHisLeuCysAlaValIleLysPheGluSerThrLeuAsnAlaLysPheLeuA 301610 : ACTTTTCATCTCTGCgctgtaattaaatttgaatctACTTTAAATGCAAAGTTTTTAC : 301669 305 : lyTyrTyrCysMetMetGluTrpAspPheLysGlnProValSerGlyLeuThrTyrLe : 323 !! !!! .!. !||||||.!. !!...!. !!:!!:!! !||||||!:!!! rgValIle***Phe***GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePh 301670 : GAGTAATTTGATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTT : 301726 324 : uIleLeuLeuValSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluLeu : 342 !! !||||||..!||| !!||||||||||||||||||||||||||||||||||||:!! eThrLeuLeuThrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIle 301727 : CACTCTGTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATT : 301783 343 : LeuAlaGluGlnThrMetLysValCysGluSerSerTyrMetIleAspTrpTyr : 360 |||:!!||||||..!:!:! ! !!..!||| :::......... !||| LeuSerGluGlnValLeuThrTyrSerArgSerPheHisPhePheSerMetTyr 301784 : CTTTCCGAACAGGTACTTACTTACAGTAGAagtttccatttcttttcaatGTAT : 301839 vulgar: CbirOr14 179 360 . KQ414889.1 300189 301839 + 257 M 83 249 G 1 0 M 12 36 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300190 301839 257 + . gene_id 20 ; sequence CbirOr14 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300190 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300190 300476 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301839 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301839 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300190 301839 257 + . alignment_id 20 ; Query CbirOr14 ; Align 300190 180 249 ; Align 300439 264 36 ; Align 301588 277 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 212 Query range: 21 -> 205 Target range: 294672 -> 295224 22 : LysAspAspLeuGlnValSerValGlnLeuAsnValTrpThrLeuLysProIleGlyT : 41 !:!:!!|||:!! ! !|||:!!:!!! ! ! ! !! !||||||||||||||| ArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyL 294673 : AGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTC : 294730 42 : hrTrpProLys<->SerProAspArgSerTrpIleGluAlaValCysCysArgThrLe : 59 !|||||| ! ! ! !!! !||| :!:.!. !||| !! ! !! !|| euTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLe 294731 : TTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCT : 294787 60 : uHisAlaSerCysTyrGlyLeuLeuAlaLeuIleLeuIleProCysGlyMetTyrIle : 78 | !|||!!!||| ! !:!! !!!!:!!|||:!:||||||||| !:! ! uIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCys 294788 : GATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGT : 294844 79 : ValLeuGluMetLysAspPheTyrAsnGlnLeuLysLeuAlaSerAlaLeuSerPheP : 98 |||!!!.!.:!:|||::: ::!:!!|||||| !.!! !!:!! !!:!! ValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrS 294845 : GTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACT : 294904 99 : heMetMetSerValMetLysTyrCysAlaLeuIleValHisGlnAlaAspIleArgLy : 117 !|||:!:|||:!!:!:!:!||| !!..!|||:!!:!! ! ! !!! .!!!:! ! erMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHi 294905 : CTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCA : 294961 118 : sCysValGluTyrIleGluGlyAspTrpArgAsnValArgTyrThrGluAspArgAsn : 136 |||:!!||| !!||||||..!||||||!:! :!! ! !! !!||| !!||| sCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAla 294962 : TTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCG : 295018 137 : IleMetLeuLysAsnAlaAsnPheGlyArgArgLeuValValIleCysGlyPhePheM : 156 ||||||:!!|||||||||! !! !!:!|||:!!..!||| !! ! !.!!.!.! IleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleI 295019 : ATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAA : 295078 157 : etTyrGlyGlyIleLeuPheTyrTyrValAlaLeuProLeuThrArgAlaLysIleTh : 175 !:|||.!!..! :!!! |||:!!!.! !:::|||... :!: leTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGl 295079 : TCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGA : 295135 176 : rAspGluAspGlyAsnMetThrTyrArgArgLeuValTyrProValProLysValIle : 194 !:!!:!! ! ..!||| ||| !||| !||| ! !|||! ! !:!!:!!.!! uAsnLysLysAsnAsn---ThrIleArgAlaLeuProIleProGlyTyrGluLeuPhe 295136 : GAACAAGAAGAATAAT---ACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTC : 295189 195 : ValAspThrArgArgSerProValAsnGluIle : 205 ||||||.!! ! !||||||..! !!|||||| ValAspAlaTyrSerSerProThrTyrGluIle 295190 : GTAGACGCTTATTCCAGTCCTACCTACGAGATC : 295224 vulgar: CbirOr14 21 205 . KQ414889.1 294672 295224 + 212 M 23 69 G 0 3 M 136 408 G 1 0 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294673 295224 212 + . gene_id 21 ; sequence CbirOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294673 295224 . + . KQ414889.1 exonerate:protein2genome:local exon 294673 295224 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294673 295224 212 + . alignment_id 21 ; Query CbirOr14 ; Align 294673 22 69 ; Align 294745 45 408 ; Align 295153 182 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 191 Query range: 193 -> 257 Target range: 202712 -> 202904 194 : IleValAspThrArgArgSerProValAsnGluIlePheTyrPheIleGlnLeuLeuS : 213 |||:!!|||..!||| !|||||||||||||||||||||!:!! |||!:!:!!:!!: IleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleValA 202713 : ATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAG : 202770 214 : erGlyPheValAlaHisAsnIleThrValAlaAlaCysGlyLeuAlaAlaLeuLeuAl : 232 !!! !.!!:!! !|||..!:!!||||||!.!|||||| !!|||.!!||||||!!!|| laValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAl 202771 : CTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGC : 202827 233 : aMetHisAlaCysGlyGlnLeuGlnValLeuIleSerTrpMetAsnHisLeuValAsp : 251 |:!:|||! !|||||||||:!!.!.||||||!!::!!|||:!!.!.||||||:!!||| aValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMetAsp 202828 : GGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGAT : 202884 252 : GlyArgGluGluValAsn : 257 ||||||..!!!::!!!:! GlyArgSerAspMetSer 202885 : GGTCGTTCGGATATGAGT : 202904 vulgar: CbirOr14 193 257 . KQ414889.1 202712 202904 + 191 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202713 202904 191 + . gene_id 22 ; sequence CbirOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202713 202904 . + . KQ414889.1 exonerate:protein2genome:local exon 202713 202904 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202713 202904 191 + . alignment_id 22 ; Query CbirOr14 ; Align 202713 194 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 345 -> 408 Target range: 230244 -> 230433 346 : GlnThrMetLysValCysGluSerSerTyrMetIleAspTrpTyrArgLeuProLysL : 365 ||| !! |||||| !!|||!.!||||||||||||!!:|||||||||||| !! !! GlnCysArgLysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyA 230245 : CAGTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAA : 230302 366 : ysLysGlyLeuAlaIleIleLeuIleIleCysMetSerAsnAlaThrThrArgLeuTh : 384 !.||| !|||..! !||||||||||||..!|||||||||..!:!!|||!:!!!!|| snLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheTh 230303 : ACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTAC : 230359 385 : rAlaGlyAsnIleIleGluLeuSerIleSerArgPheGlyAspValIleLysSerSer : 403 ||||||||||!!::!!|||||||||:!!!:!! !|||.!!||||||! !! ! !! ! rAlaGlyAsnMetValGluLeuSerValAsnThrPheSerAspValSerIleIlePhe 230360 : AGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGACGTAAGTATCATATTC : 230416 404 : ValValTyrLeuAsn : 408 !|||||| !||| SerValTyrThrAsn 230417 : TCTGTTTACACGAAT : 230433 vulgar: CbirOr14 345 408 . KQ414889.1 230244 230433 + 167 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230245 230433 167 + . gene_id 23 ; sequence CbirOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230245 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230245 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230245 230433 167 + . alignment_id 23 ; Query CbirOr14 ; Align 230245 346 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 341 -> 399 Target range: 214848 -> 215022 342 : LeuLeuAlaGluGlnThrMetLysValCysGluSerSerTyrMetIleAspTrpTyrA : 361 :!!:!! !:!!||| !! |||||| ! ||| !||||||||||||!!:||||||| IleMetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrA 214849 : ATTATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACC : 214906 362 : rgLeuProLysLysLysGlyLeuAlaIleIleLeuIleIleCysMetSerAsnAlaTh : 380 |||||||| !!.||| !|||..! !|||||||||!!:...|||||||||:!!:! rgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSe 214907 : GATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATC : 214963 381 : rThrArgLeuThrAlaGlyAsnIleIleGluLeuSerIleSerArgPheGlyAspVal : 399 !..!!:!!!!||||||||||||!!::!!|||||||||||||||! !|||.!!..!||| rValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214964 : CGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215020 vulgar: CbirOr14 341 399 . KQ414889.1 214848 215022 + 164 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214849 215022 164 + . gene_id 24 ; sequence CbirOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214849 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214849 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214849 215022 164 + . alignment_id 24 ; Query CbirOr14 ; Align 214849 342 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 301 -> 346 Target range: 305076 -> 305211 302 : PheLeuGlyTyrTyrCysMetMetGluTrpAspPheLysGlnProValSerGlyLeuT : 321 |||||| ||| ..!!!:|||!!: !!...!. !!|||||| ! !| PheLeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrT 305077 : TTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAA : 305134 322 : hrTyrLeuIleLeuLeuValSerValThrPheAsnIlePheIlePheCysTyrIleGl : 340 ||||| !:!:||||||:!!||||||||||||||||||||||||!!.||||||||||| hrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGl 305135 : CATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGG : 305191 341 : yGluLeuLeuAlaGluGln : 346 ||||:!!||| !|||:!! yGluIleLeuMetGluLys 305192 : TGAGATTCTTATGGAAAAG : 305211 vulgar: CbirOr14 301 346 . KQ414889.1 305076 305211 + 129 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305077 305211 129 + . gene_id 25 ; sequence CbirOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305077 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305077 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305077 305211 129 + . alignment_id 25 ; Query CbirOr14 ; Align 305077 302 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 309 -> 346 Target range: 214629 -> 214740 310 : GluTrpAspPheLysGlnProValSerGlyLeuThrTyrLeuIleLeuLeuValSerV : 329 ||||||:!!! !!..!. !..!!!! !:!!||||||:!!:!:|||! !:!!|||: GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValValLeuTyrIleSerL 214630 : gAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGGTGTTGTATATCTCTC : 214687 330 : alThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuAlaGluGln : 346 ::|||||||||||||||||||||||||||||||||||||||:!!:!!|||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValSerGluGln 214688 : tcactttcaatattttcatattttgttaCATAGGCGAGCTTGTGTCTGAACAG : 214740 vulgar: CbirOr14 309 346 . KQ414889.1 214629 214740 + 123 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214630 214740 123 + . gene_id 26 ; sequence CbirOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214630 214740 123 + . alignment_id 26 ; Query CbirOr14 ; Align 214630 310 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 309 -> 345 Target range: 228247 -> 228355 310 : GluTrpAspPheLysGlnProValSerGlyLeuThrTyrLeuIleLeuLeuValSerV : 329 ||||||:!! |||:!! !..!! !!.!:!!||||||! ! ||||||:!!||| GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerP 228248 : GAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCT : 228305 330 : alThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuAlaGlu : 345 !!||||||||||||||||||||||||||||||||||||:!!:!!|||||| heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGlu 228306 : TTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAA : 228355 vulgar: CbirOr14 309 345 . KQ414889.1 228247 228355 + 117 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228248 228355 117 + . gene_id 27 ; sequence CbirOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 228248 228355 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228355 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228248 228355 117 + . alignment_id 27 ; Query CbirOr14 ; Align 228248 310 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 309 -> 346 Target range: 291368 -> 291479 310 : GluTrpAspPheLysGlnProValSerGlyLeuThrTyrLeuIleLeuLeuValSerV : 329 ||||||!!: !!...!. !!:!!.!! !|||||||||:!!! !||||||..!||| GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 330 : alThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuAlaGluGln : 346 !!||||||||||||.!.||||||||||||:!!|||||||||||| !! !||| heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAG : 291479 vulgar: CbirOr14 309 346 . KQ414889.1 291368 291479 + 112 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 291479 112 + . gene_id 28 ; sequence CbirOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 291479 112 + . alignment_id 28 ; Query CbirOr14 ; Align 291369 310 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 309 -> 349 Target range: 272836 -> 272956 310 : GluTrpAspPheLysGlnProValSerGlyLeuThrTyrLeuIleLeuLeuValSerV : 329 |||||| ! ! ! .!. ! !||| ! !||||||!!!!!::!!|||:!!|||: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 330 : alThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuAlaGluGlnThrMe : 348 !:|||||||||||||||||| |||||||||||||||:!!|||.!!|||::!..!|| etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArgValMe 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGGTAAT : 272951 349 : tLys : 349 |::: tGln 272952 : gcaa : 272956 vulgar: CbirOr14 309 349 . KQ414889.1 272836 272956 + 110 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 272956 110 + . gene_id 29 ; sequence CbirOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272837 272956 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272956 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 272956 110 + . alignment_id 29 ; Query CbirOr14 ; Align 272837 310 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 307 -> 349 Target range: 264531 -> 264657 308 : MetMetGluTrpAspPheLysGlnProValSerGlyLeuThrTyrLeuIleLeuLeuV : 327 .!...!||||||!!: ! ! ... ::: !||||||!!!!!::!!|||: PheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuI 264532 : TTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATACTGA : 264589 328 : alSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuAlaGluGl : 346 !!|||:!! ! !|||||||||:!!.!.|||||||||||||||:!!|||.!!||||| leSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGl 264590 : TATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGca : 264646 347 : nThrMetLys : 349 |...:::||| nValIleLys 264647 : ggtaattaaa : 264657 vulgar: CbirOr14 307 349 . KQ414889.1 264531 264657 + 100 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264532 264657 100 + . gene_id 30 ; sequence CbirOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264532 264657 . + . KQ414889.1 exonerate:protein2genome:local exon 264532 264657 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264532 264657 100 + . alignment_id 30 ; Query CbirOr14 ; Align 264532 308 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 512 Query range: 15 -> 400 Target range: 217141 -> 219671 16 : LysGluAsnGluGlnHisValSerAspPheArgTyrAlaValGlnIleSerValTyrL : 35 !:! :!! ! :!:::: ...:::...... ::!:!!||| !:! !!::| ArgThrAspTyrGluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpL 217142 : AGAACCGACTACGAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGT : 217199 36 : euLeuLysProIleGlyAlaTrpProLeuAspAspAspGluAlaThrSerTrpLeuLy : 54 |||||||||||!!:||| !|||||| :!!.......!!|||!!! ! ! !:: euLeuLysProMetGlyLeuTrpPro------AsnSerArgThrThrThrArgSerAr 217200 : TGTTGAAACCGATGGGTCTTTGGCCA------AACTCACGTACCACCACCAGATCCCG : 217250 55 : sIleAlaValHisLysValSerThrLeuIleAlaThrPheLeuMetLeuPheThrIle : 73 !! ! !:!!:!!|||:!!! !!.! !:!!..! ! !|||!!: !||| !.!! gLysIleLeuTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPhe 217251 : AAAAATCCTCTACAAACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTC : 217307 74 : ValProTrpIleValGlnIleIleLysGluLysTrpSerValIleGlnMetLeuArgT : 93 ||||||!! !:!! ! :!:.!! ||| ..!:!! !.!.! !|||!:! ValProCysSerMetTyrValPheLeuGluValGluAspLeuTyrAspLysLeuLysL 217308 : GTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAAC : 217367 94 : hrIleCysProLeuLeuPheThrLeuThrValPheAlaArgTyrIleLeuLeuMetLe : 112 !.!! !!||||||:!!||| !:!!! !!.!|||!.!!:!||| !! !|||!!::! euPheGlyProLeuIlePheCysValMetAlaPheValLysTyrTyrSerLeuIleVa 217368 : TGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGT : 217424 113 : uHisGlnAsnGlnLeuLysSerCysMetAspArgValAlaAspAspTrpArgTyrThr : 131 !|||:!! .!.:!!:::..!|||:!! |||:!!! ! ||||||||| !!..! lHisLysAlaAspIleArgGluCysValArgArgIleGluArgAspTrpArgAsnVal 217425 : TCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTC : 217481 132 : IleIleAlaGluAspArgGluThrMetLeuAlaAsnAlaArgMetGlyArgThrPheG : 151 ! ! !! !:!!|||||||||.!!|||:!!!.!||||||!.!.!.||||||! !!!.! ArgCysGluLysAspArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuV 217482 : AGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGG : 217541 152 : lyIleValSerValValPheMetPheSerSerGlyAlaLeuPhePhe<->SerLeuPr : 169 !:!!:!!!!!..! !!||||||!:!|||... ......:::::: :!!:!!|| alLeuLeuCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIlePr 217542 : TCCTACTCTGTACCTTCTTCATGTACAGCggtttcgttttttattacatCGCTATACC : 217598 170 : oLeuValLeuProSerLeuIleAsnGluAsp<->AsnValThrValArgLeuHisPro : 187 |:!! !:!! !!!!:!!:!!:::|||:!! |||:!!||| !!! !! ! ! oIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeuVal 217599 : GATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTG : 217655 188 : SerProCysGluLeuLeuValPheAspSerLysIleThrProValTyrGluIleValT : 207 ! !|||! ! ! !! !:!!.!!|||!!!::: !||||||..! !!|||||||||! PheProPheThrLysTyrIleIleAspThrArgTyrThrProThrAsnGluIleValP 217656 : TTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGT : 217715 208 : yrLeuLeuGlnThrLeuSerGlyCysThrIleTyrSerAlaPheCysGlyIleCysSe : 226 :!!!!|||||| !:!!:!!|||..! !!!::!!.!! ! ! !.! !||||| hePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSe 217716 : TTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAG : 217772 227 : rLeuMetAlaAsnPheValValHisValCysGlyGlnCysAspValLeuThrLeuIle : 245 |||| !||| !|||!.!||||||!.!||||||||| !!!:||||||! ! ! rLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGluValLeuMetAsnTrp 217773 : TTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGG : 217829 246 : PheAspGluThrValAspGlyGlyGluHisAsnArgGlyProIleGluGlyArgIleA : 265 .!..!..!. !:!!|||||| !!! ! !!! !!!! ! !!:!:!!:|||||||||| LeuGlnHisLeuIleAspGlyArgAlaAspMetSerAspThrValAspGlyArgIleA 217830 : CTGCAACATTTAATCGACGGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCG : 217889 266 : laThrAlaValThrArgHisLeuArgMetLeu{Ar} >>>> Target Intron 1 : 276 ||!:! !|||!:!!:!|||:!!|||!!:|||{!:} 1229 bp laSerIleValSerGlnHisValArgIleLeu{Ly}++ 217890 : CGAGCATCGTCAGTCAACACGTTCGGATATTA{AA}gt.................... : 217926 277 : >>>> {g}LeuValSerAspValSerGlyLeuPheThrGluIleCysLeuValGlu : 292 {!}...::::!! !..!..! !! !.!! !:!!|||! !!!!!.!||| ++{s}PheLeuThrLeuThrGluArgThrLeuGlnGlnIleSerPheAlaGlu 217927 : .....ag{a}tttttgaCGCTCACAGAGAGAACCCTCCAGCAAATCTCTTTCGCTGAA : 219199 293 : PheIleGlnAlaSerCysAsnIleCysLeuIleGlyTyrTyrIleIleThr >>>> : 310 |||:!! !..!!!! :!!|||||||||:!!|||||||||||||||..! PheLeuGlyCysThrMetAspIleCysLeuValGlyTyrTyrIleIleVal++ 219200 : TTTCTAGGATGCACCATGGACATATGTCTCGTTGGATATTACATTATCGTGgt..... : 219255 311 : Target Intron 2 >>>> AspLeuAsnAsnAsnGluSerPheValGlnIleSer : 321 76 bp !!:! !!!.:::|||!!: ! ! !:!:!!! ++GluTrpLysSerAsnAspValThrSerAlaValThr 219256 : ....................agGAATGGAAATCGAATGATGTAACGAGTGCAGTGACA : 219362 322 : MetTyrValLeuAlaLeuAlaSerIleValPheAsnValPheMetPheCysTyrIleG : 341 |||:!!:!! !||| !|||:!:...||||||:::|||:::||||||||||||| ---TyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleG 219363 : ---TACATCATTCTACTTATATCCCTcactttcaacattttcatattttgctaCATAG : 219419 342 : lyAspLeuLeuAlaGluArg >>>> Target Intron 3 >>>> CysGlnLys : 350 ||!!::!!:!!||||||!:: 73 bp |||:::||| lyGluIleValAlaGluGln++ ++CysArgLys 219420 : GAGAGATCGTTGCTGAACAggt.........................agTGtaggaaa : 219519 351 : LeuGlyThrThrCysTyrThrValGluTrpTyrArgMetProProArgLysAlaValG : 370 :::||| |||! !:!!||||||||||||:!! !! !!:!||| !:!! IleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysLysLeuT 219520 : attggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAAAGCTCT : 219579 371 : luMetIleMetProIleThrIleSerArgTyrProAlaThrLeuThrAlaGlyLysMe : 389 !! :!!:!! !!|||.!!!!:|||!.!! ! !! !! !||||||||||||!!.|| rpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMe 219580 : GGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGGAAATAT : 219636 390 : tMetThrMetThrLeuThrThrPheSerAspIle : 400 |:!: !:!!:!!:!!!:!||||||!!!|||:!: tValGluLeuSerIleSerThrPheThrAspVal 219637 : GGTCGAATTGTCTATCAGCACTTTTACCGACGTG : 219671 vulgar: CbirOr5 15 400 . KQ414889.1 217141 219671 + 512 M 28 84 G 2 0 M 121 363 G 0 3 M 13 39 G 0 3 M 96 288 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 12 36 G 1 0 M 25 75 5 0 2 I 0 69 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217142 219671 512 + . gene_id 1 ; sequence CbirOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217142 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217142 217923 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217142 219671 512 + . alignment_id 1 ; Query CbirOr5 ; Align 217142 16 84 ; Align 217226 46 363 ; Align 217592 167 39 ; Align 217634 180 288 ; Align 219154 277 99 ; Align 219329 310 36 ; Align 219365 323 75 ; Align 219513 348 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 481 Query range: 33 -> 400 Target range: 212893 -> 215022 34 : TyrLeuLeuLysProIleGlyAlaTrpProLeuAspAspAspGluAlaThrSerTrpL : 53 !::||||||||||||! ||| !|||||| ||| ! ... !..!||| !: TrpLeuLeuLysProThrGlyLeuTrpPro------AspLysSerTyrValSerProI 212894 : TGGCTTTTGAAACCAACGGGTTTGTGGCCC------GACAAGTCCTACGTTTCACCGA : 212945 54 : euLysIleAlaValHisLysValSerThrLeuIleAlaThrPheLeuMetLeuPheTh : 72 !!:!!! ! !:!! !::!:!! !!.! !:!!..! ! !|||!!: !!:! leGluLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLe 212946 : TCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCT : 213002 73 : rIleValProTrpIleValGlnIleIleLysGluLysTrpSerValIleGlnMetLeu : 91 !:!!:!!|||!! ! !:!! ! :!:.!! !!: ! ::::::...::: :!! uValIleProCysSerLeuTyrValPheLeuAspValGluAsnIlePheLysGluIle 213003 : TGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaagagaTC : 213059 92 : ArgThrIleCysProLeuLeuPheThrLeuThrValPheAlaArgTyrIleLeuLeuM : 111 ..! !.!! !! !!!! !||| !:!!.!!!.!.!. !!:!||| !! !|||! GluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuI 213060 : GAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGA : 213119 112 : etLeuHisGlnAsnGlnLeuLysSerCysMetAspArgValAlaAspAspTrpArgTy : 130 !:|||||| :!!.!.:!!:::!!!|||:!:!!:!.!:!! ! !!||||||!:! ! leLeuHisGlyAspAspIleArgThrCysValGluHisMetLysTyrAspTrpLysAs 213120 : TACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAA : 213176 131 : rThrIleIleAlaGluAspArgGluThrMetLeuAlaAsnAlaArgMetGlyArgThr : 149 !! !! !! !||||||!:!|||! !||| ! !||||||!!!.!.|||!:!! ! nIleThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArg 213177 : TATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGG : 213233 150 : PheGlyIleValSerValValPheMetPheSerSerGlyAlaLeuPhePhe<->SerL : 168 .!.! !! !:!!!!!!.! !!||||||!:!!!!.!! !.!!!!!!:!||| !: IleValThrIleCysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuValV 213234 : ATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCG : 213293 169 : euProLeuValLeuProSerLeuIleAsnGluAsp<->AsnValThrValArgLeuHi : 186 !!|||:!! ! ! !!.!:!!:!! |||||| ||||||||| !!|||! ! alProIleSerAlaAspLysMetValAlaGluAspLeuAsnValThrPheArgGlnMe 213294 : TACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAAT : 213350 187 : sProSerProCysGluLeuLeuValPheAspSerLysIleThrProValTyrGluIle : 205 ! !||| !..! !!!!:!! !!||| !::! !!:!|||||| !!|||||| tValValProValSerArgPheIleValAspValArgTyrSerProValAsnGluIle 213351 : GGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATA : 213407 206 : ValTyrLeuLeuGlnThrLeuSerGlyCysThrIleTyrSerAlaPheCysGlyIleC : 225 !!!:!|||:!!|||! !:!!:!!||| !|||:!!:!! ! ! ! !| PhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAlaC 213408 : TTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTT : 213467 226 : ysSerLeuMetAlaAsnPheValValHisValCysGlyGlnCysAspValLeuThrLe : 244 |||||||| ||| |||!.!||||||!.!||||||||| ! !:!!|||! ! ysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSe 213468 : GTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAG : 213524 245 : uIlePheAspGluThrValAspGlyGlyGluHisAsnArgGlyProIleGluGlyArg : 263 ! .!.!!:.!. !:!!|||||| !!||| !!! !!! ! !:!:!!:! !||| rTrpLeuGluHisLeuIleAspGlyArgGluAspMetSerLysAsnValAspAspArg 213525 : CTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGCAAGAATGTGGACGACAGA : 213581 264 : IleAlaThrAlaValThrArgHisLeuArgMetLeu{Ar} >>>> Target Intr : 276 ||||||..! !|||!.!!:!|||:!!|||!!:|||{!:} 840 bp IleAlaValIleValAsnGlnHisValArgIleLeu{Ly}++ 213582 : ATCGCGGTCATCGTGAACCAGCATGTGCGGATACTG{AA}gt................ : 213624 277 : on 1 >>>> {g}LeuValSerAspValSerGlyLeuPheThrGluIleCysLeuVa : 291 {!}!!!:!!..! !|||..! ! !.!! !:!!:!!! !!!!!. ++{s}PheLeuGluLeuValGluLysAlaLeuArgGlnValSerPheAl 213625 : .........ag{A}TTCTTAGAGCTCGTGGAGAAAGCACTTCGGCAAGTATCTTTCGC : 214505 292 : lGluPheIleGlnAlaSerCysAsnIleCysLeuIleGlyTyrTyrIleIleThr > : 310 !|||!!.:!! !..!!!! |||:!!||||||:!!|||||||||||||||||| aGluLeuLeuValCysThrValAsnLeuCysLeuValGlyTyrTyrIleIleThr++ 214506 : TGAATTATTAGTATGCACGGTGAATCTCTGTCTCGTTGGATATTACATAATAACGgt. : 214564 311 : >>> Target Intron 2 >>>> AspLeuAsnAsnAsnGluSerPheValGlnIl : 320 68 bp :!:! !|||:::|||.!.! ! ..! !:! ++GluTrpAsnSerAsnAsnLeuThrThrThrVa 214565 : ........................aggAATGGAATTCGAACAATTTAACAACTACAGT : 214660 321 : eSerMetTyrValLeuAlaLeuAlaSerIleValPheAsnValPheMetPheCysTyr : 339 !!!! ||||||:!! !! ! !|||:::...||||||:::|||:::||||||||| lThr---TyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyr 214661 : AACT---TACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaC : 214714 340 : IleGlyAspLeuLeuAlaGluArg >>>> Target Intron 3 >>>> CysGl : 349 ||||||!!:|||:!!:!!|||!:! 123 bp |||:! IleGlyGluLeuValSerGluGln++ ++CysLy 214715 : ATAGGCGAGCTTGTGTCTGAACAGgt.........................agTGCAA : 214867 350 : nLysLeuGlyThrThrCysTyrThrValGluTrpTyrArgMetProProArgLysAla : 368 !|||:!!||| !..!! |||! !:!!||||||||||||:!!||| !!.!||| ! sLysValGlyGluValSerTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLys 214868 : AAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAG : 214924 369 : ValGluMetIleMetProIleThrIleSerArgTyrProAlaThrLeuThrAlaGlyL : 388 :!! |||:!! !!!:.!!!!:|||!.!! !!!.!! !!!!|||||||||! LeuCysCysIleLeuIleMetAlaMetSerAsnSerSerValLysPheThrAlaGlyA 214925 : CTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAA : 214984 389 : ysMetMetThrMetThrLeuThrThrPheSerAspIle : 400 !.|||:!: !:!!:!!:!!!:!|||||||||..!:!! snMetValGluLeuSerIleSerThrPheSerSerVal 214985 : ACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215022 vulgar: CbirOr5 33 400 . KQ414889.1 212893 215022 + 481 M 10 30 G 2 0 M 121 363 G 0 3 M 13 39 G 0 3 M 96 288 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 M 33 99 5 0 2 I 0 64 3 0 2 M 12 36 G 1 0 M 25 75 5 0 2 I 0 119 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212894 215022 481 + . gene_id 2 ; sequence CbirOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212894 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 212894 213621 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212894 215022 481 + . alignment_id 2 ; Query CbirOr5 ; Align 212894 34 30 ; Align 212924 46 363 ; Align 213290 167 39 ; Align 213332 180 288 ; Align 214463 277 99 ; Align 214630 310 36 ; Align 214666 323 75 ; Align 214864 348 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 423 Query range: 3 -> 409 Target range: 226864 -> 230433 4 : ArgLysArgArgSerAlaSerAlaThrAspValThrLysGluAsnGluGlnHisValS : 23 !:!|||!:!|||||||||!:! !.!!..!:!!.!!! !||||||!!: :!! !. LysLysGlnArgSerAlaAsnLeuAlaSerLeuAlaThrGluAsnAsp---TyrGlnG 226865 : AAAAAACAGCGATCGGCGAACCTCGCGTCTCTCGCGACAGAGAACGAC---TATCAGG : 226919 24 : erAspPheArgTyrAlaValGlnIleSerValTyrLeuLeuLysProIleGlyAlaTr : 42 .! !!!!.!.! ::!:!!|||:!:!:! !!::||||||||||||:!!||| !|| luTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTr 226920 : AATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTG : 226976 43 : pProLeuAspAspAspGluAlaThrSerTrpLeuLysIleAlaValHisLysValSer : 61 |||| ......... !!:!||| ! :!! !! !..! !! ! !:!!! ! pPro------SerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMet 226977 : GCCG------TCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATG : 227027 62 : ThrLeuIleAlaThrPheLeuMetLeuPheThrIleValProTrpIleValGlnIleI : 81 !!!!:!!..! ! |||||| !||| !:!:||| !! ! !:!! ! :!:: GlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrValV 227028 : GGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGG : 227087 82 : leLysGluLysTrpSerValIleGlnMetLeuArgThrIleCysProLeuLeuPheTh : 100 !! !||| ! .!!!.! !.!.! !|||!:!! !||| !!|||:!!! !||| alLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPhePh 227088 : TTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTT : 227144 101 : rLeuThrValPheAlaArgTyrIleLeuLeuMetLeuHisGlnAsnGlnLeuLysSer : 119 ! !! ! !.!! !!:!||| !:!!|||! !!!!|||:!!:!!.!.:!! ..! eAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGlu 227145 : CGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAG : 227201 120 : CysMetAspArgValAlaAspAspTrpArgTyrThrIleIleAlaGluAspArgGluT : 139 |||:!:!!:|||:!! ! ||||||!:! !!! !! ! ! !|||||||||.!.. CysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsnV 227202 : TGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAACG : 227261 140 : hrMetLeuAlaAsnAlaArgMetGlyArgThrPheGlyIleValSerValValPheMe : 158 .!|||:!!.!! !!||| ! ||||||! !!!. !! !:!!!!!..! !!|||:! alMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheVa 227262 : TGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGT : 227318 159 : tPheSerSerGlyAlaLeuPhePhe<->SerLeuProLeuValLeuProSerLeuIle : 176 :||||||||| ......|||::: !:!!|||:!! ! ! !|||:!! ! lPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerValAla 227319 : CTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCA : 227375 177 : AsnGluAsp<->AsnValThrValArgLeuHisProSerProCysGluLeuLeuValP : 195 !..|||||| ||| !!:! !! !! ! |||! !|||! ! ! !:!!:!! ThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIleIleA 227376 : ACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCG : 227435 196 : heAspSerLysIleThrProValTyrGluIleValTyrLeuLeuGlnThrLeuSerGl : 214 !||| !::: !!:!||| !! !!|||||| !!!:!! !:!!||| !:!!!!!|| laAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValThrGl 227436 : CTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGG : 227492 215 : yCysThrIleTyrSerAlaPheCysGlyIleCysSerLeuMetAlaAsnPheValVal : 233 | !..!:!::!!.!!!.! ! !.! !||||||:!! ||| .!!!.!||| yIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaVal 227493 : TATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTT : 227549 234 : HisValCysGlyGlnCysAspValLeuThrLeuIlePheAspGluThrValAspGlyG : 253 |||!.!||||||||| !!:||||||..!! ! .!.! .!. !:!!|||||| HisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGlyA 227550 : CATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGCA : 227609 254 : lyGluHisAsnArgGlyProIleGluGlyArgIleAlaThrAlaValThrArgHisLe : 272 !!! ! !!! !!! ! !!:!:!!:! !|||||||||!:! !||||||!.!|||:! rgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValThrHisHisVa 227610 : GAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACCACGT : 227666 273 : uArgMetLeuArgLeuValSerAspValSerGlyLeuPheThrGluIleCysLeuVal : 291 !|||!!:|||!:!! !|||!!! !:!!! ! !|||!:! !!!: !! !|||::: lArgIleLeuLysCysValThrCysIleTyrLeuLeuTyrArgAsp***PheLeuLeu 227667 : TCGAATATTGAAGTGTGTAACGTGTATCTATTTGTTGTATCGTGATTAATTTCTcttg : 227723 292 : GluPheIleGlnAlaSerCysAsnIleCysLeuIleGlyTyrTyrIleIleThrAsp : 311 ...||| ||| !||| ! !! ! ! !||| ! .!! !!!: AsnPheAsnGlnTyrSerArgLeuAlaTyrAsnAlaLeuTyrGluPheAlaLeuGlu+ 227724 : aattttaatcaatACAGCAGACTAGCTTATAACGCGTTGTATGAATTCGCGTTAGAGg : 227783 312 : >>>> Target Intron 1 >>>> LeuAsnAsnAsnGluSerPheValGlnIle : 320 465 bp ! ||| :!!..!!!...! ! - ++GluTrpAsnProLysGluLeuThrPheAla 227784 : a.........................agGAATGGAATCCGAAAGAGTTAACATTTGCT : 228275 321 : SerMetTyrValLeuAlaLeuAlaSerIleValPheAsnValPheMetPheCysTyrI : 340 !! ||| ! ! !||| !|||.!!...||||||:::|||:::|||||||||| ValThrTyrSerAlaLeuLeuLeuSerPheThrPheAsnIlePheIlePheCysTyrI 228276 : GTAACTTACTCAGCGTTACTTTTATCCTTTAccttcaatattttcatattttgttaTA : 228335 341 : leGlyAspLeuLeuAlaGluArg >>>> Target Intron 2 >>>> CysGln : 349 |||||!!::!!:!!||||||!.! 1889 bp |||::! leGlyGluIleValAlaGluHis++ ++CysArg 228336 : TAGGAGAAATTGTTGCCGAACACgt.........................agTGCAGA : 230251 350 : LysLeuGlyThrThrCysTyrThrValGluTrpTyrArgMetProProArgLysAlaV : 369 |||:!!||| !! !! |||! !:!!||||||||||||:!: !! !!.!||| !: LysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyAsnLysLysL 230252 : AAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAAACAAGAAGC : 230311 370 : alGluMetIleMetProIleThrIleSerArgTyrProAlaThrLeuThrAlaGlyLy : 388 !! |||:!! !|||.!!!!:|||!.!! ! !!.!!! !!!!|||||||||!! euCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheThrAlaGlyAs 230312 : TCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTACAGCAGGAAA : 230368 389 : sMetMetThrMetThrLeuThrThrPheSerAspIleLeuLysThrSerMetAlaTyr : 407 .|||:!: !:!::!!:!!!.!||||||||||||:!! !! ! !! ! !.!||| nMetValGluLeuSerValAsnThrPheSerAspValSerIleIlePheSerValTyr 230369 : CATGGTTGAATTATCCGTAAACACTTTCAGCGACGTAAGTATCATATTCTCTGTTTAC : 230425 408 : PheAsn : 409 ||| ThrAsn 230426 : ACGAAT : 230433 vulgar: CbirOr5 3 409 . KQ414889.1 226864 230433 + 423 M 16 48 G 1 0 M 23 69 G 2 0 M 121 363 G 0 3 M 13 39 G 0 3 M 131 393 5 0 2 I 0 461 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226865 230433 423 + . gene_id 3 ; sequence CbirOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226865 227782 . + . KQ414889.1 exonerate:protein2genome:local exon 226865 227782 . + . insertions 6 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 227783 227784 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 227783 228247 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226865 230433 423 + . alignment_id 3 ; Query CbirOr5 ; Align 226865 4 48 ; Align 226913 21 69 ; Align 226982 46 363 ; Align 227348 167 39 ; Align 227390 180 393 ; Align 228248 311 111 ; Align 230248 348 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 346 Query range: 22 -> 309 Target range: 278564 -> 280011 23 : SerAspPheArgTyrAlaValGlnIleSerValTyrLeuLeuLysProIleGlyAlaT : 42 !!!|||!::! !|||::!||||||!!:!:! !!::!!!|||||||||||||||!.!| ThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValT 278565 : ACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTAT : 278622 43 : rpProLeuAspAspAspGluAlaThrSerTrpLeuLysIleAlaValHisLysValSe : 61 |||||||| ..! ..!..!!!! |||:!!! ! ! ! !||| rpProLeu------SerLeuCysValThrThrLeuGluLysIleSerSerValValLe 278623 : GGCCTCTC------AGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCT : 278673 62 : rThrLeuIleAlaThrPheLeuMetLeuPheThrIleValProTrpIleValGlnIle : 80 !.!!||||||::! !||||||!!: !||| !:!:||||||!! !:!! ! ! uAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThr 278674 : CGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACA : 278730 81 : IleLysGluLysTrpSerValIleGln<->MetLeuArgThrIleCysProLeuLeuP : 99 :!: !!:||| .!!! !:!!.!. ! !:!!!:!! !||| !!|||||| !| ValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerP 278731 : GTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTT : 278790 100 : heThrLeuThrValPheAlaArgTyrIleLeuLeuMetLeuHisGlnAsnGlnLeuLy : 118 || ! !! !!.! !!:!||| !:!!||||||! !!.! ..!:!!:!! heCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGl 278791 : TCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGG : 278847 119 : sSerCysMetAspArgValAlaAspAspTrpArgTyrThrIleIle<-><-><->Ala : 134 !.!|||:!!:!! !:!! ! |||||| ! !|||:!! yLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGlu 278848 : CAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaa : 278904 135 : GluAspArgGluThrMetLeuAlaAsnAlaArgMetGlyArgThrPheGlyIleValS : 154 |||:::|||||| ||| !! !!:!||||||!!:||||||:!!!!.!.!||| !!| GluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheS 278905 : gaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCA : 278964 155 : erValValPheMetPheSerSerGlyAlaLeuPhePheSer<->LeuProLeuValLe : 172 ||!.!! !||||||!:!|||.!!|||!.!!!!!:! !:!! :!!|||||| !! erAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAl 278965 : GCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGC : 279021 173 : uProSerLeuIleAsnGluAspAsnValThrValArgLeuHisProSerProCysGlu : 191 ! ! !! ! ! ! ||||||! !|||||||||! !!!. !!! !||| ! ! aValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyr 279022 : AGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTAT : 279078 192 : LeuLeuValPheAspSerLysIleThrProValTyrGluIleValTyrLeuLeuGlnT : 211 ! ! !:!!.!!||| !!:::! !!:!||| !!:!||||||||| ! !!!:!!||| ArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnC 279079 : CGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAAT : 279138 212 : hrLeuSerGlyCysThrIleTyrSerAlaPheCysGlyIleCysSerLeuMetAlaAs : 230 !|||:!!!.!! !..!:!!||||||!.! ! !||| !|||||||||!!:||| ysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaVa 279139 : GCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGT : 279195 231 : nPheValValHisValCysGlyGlnCysAspValLeuThrLeuIlePheAspGluThr : 249 ||||||:!!|||||||||||||||! ! :!!|||..! !! .!.|||:!! ! lPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeu 279196 : GTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTC : 279252 250 : ValAspGly<-><->GlyGluHisAsnArgGlyProIleGluGlyArgIleAlaThrA : 267 :!!|||||| |||..! ! !:! !.!! !! !||| !|||:!:!.! ! IleAspGlyValLysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspI 279253 : ATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATA : 279312 268 : laValThrArgHisLeuArgMetLeu{Ar} >>>> Target Intron 1 >>>> : 276 !:!! !!.!||||||!:!!!:|||{ !} 571 bp leIleGluHisHisLeuLysIleLeu{Gl}++ + 279313 : TCATCGAGCATCATCTGAAGATACTG{GG}gt.........................a : 279910 277 : {g}LeuValSerAspValSerGlyLeuPheThrGluIleCysLeuValGluPheIle : 294 {!}!!!:!!|||.!.:!!..!||||||.!.!.!|||||||||!!!|||||| ! ||| +{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValIle 279911 : g{T}TTTATATCGCAAATCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTGATT : 279964 295 : GlnAlaSerCysAsnIleCysLeuIleGlyTyrTyrIleIleThr : 309 ..!!!!! |||||||||!!!:!: !||||||:!!:!!||| GlyCysThrLeuAsnIleCysPheLeuThrTyrTyrLeuLeuThr 279965 : GGTTGCACGTTGAACATATGCTTTTTGACATATTATTTACTCACG : 280011 vulgar: CbirOr5 22 309 . KQ414889.1 278564 280011 + 346 M 22 66 G 2 0 M 43 129 G 0 3 M 44 132 G 0 9 M 34 102 G 0 3 M 85 255 G 0 6 M 23 69 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278565 280011 346 + . gene_id 4 ; sequence CbirOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278565 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278565 279340 . + . insertions 21 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278565 280011 346 + . alignment_id 4 ; Query CbirOr5 ; Align 278565 23 66 ; Align 278631 47 129 ; Align 278763 90 132 ; Align 278904 134 102 ; Align 279009 168 255 ; Align 279270 253 69 ; Align 279913 277 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 324 Query range: 14 -> 278 Target range: 221342 -> 222134 15 : ThrLysGluAsnGluGlnHisValSerAspPheArgTyrAlaValGlnIleSerValT : 34 |||:::! .!. ! .!.:!! !!!!:!! ! !:!! ::!||||||:!:||| !! ThrArgValGluTyrAspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgT 221343 : ACTCGTGTTGAATACGATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTT : 221400 35 : yrLeuLeuLysProIleGlyAlaTrpProLeuAspAspAspGluAlaThrSerTrpLe : 53 :::!!|||||||||||||||!.!|||||| :!!...! !! !||| !:! rpIleLeuLysProIleGlyValTrpPro------AsnSerAlaAsnIleSerThrVa 221401 : GGATCTTGAAGCCGATCGGTGTTTGGCCA------AATTCAGCCAACATTTCCACGGT : 221451 54 : uLysIleAlaValHisLysValSerThrLeuIleAlaThrPheLeuMetLeuPheThr : 72 !:!!! ! !:!!:!! !:!!! !!.!:!!:!!..! ! !|||!!: !||| ! lGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLeuIleThrPheLeu 221452 : AGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTC : 221508 73 : IleValProTrpIleValGlnIleIleLysGluLysTrpSerValIleGlnMetLeuA : 92 :!:||||||!! ! !:!! ! :!:||| ||| ! ..!||| !.!.! :!!! LeuValProCysSerLeuTyrValIleLeuGluValGluAspValTyrAsnArgIleL 221509 : TTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCA : 221568 93 : rgThrIleCysProLeuLeuPheThrLeuThrValPheAlaArgTyrIleLeuLeuMe : 111 :! !:!: !!|||||| !||| !:!!! !!.!||| !!:!||| !||||||!! ysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIl 221569 : AATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGAT : 221625 112 : tLeuHisGlnAsnGlnLeuLysSerCysMetAspArgValAlaAspAspTrpArgTyr : 130 :|||:!!:!!|||.!.:!!:::..!|||!!:!!:|||:!!! ! ||||||!:! !! eLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTrpAspTrpLysAsn 221626 : ACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAAT : 221682 131 : ThrIleIleAlaGluAspArgGluThrMetLeuAlaAsnAlaArgMetGlyArgThrP : 150 ! !! ! !:!!:!!|||!:!!!:! !|||:!!! !||||||! !.!.|||||| !! IleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgL 221683 : ATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGAT : 221742 151 : heGlyIleValSerValValPheMetPheSerSerGlyAlaLeuPhePhe<->SerLe : 168 !. !!!::!!!!!..! !!||||||!:!|||... ......:::::: :!!:! euIleMetIleCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIl 221743 : TGATCATGATCTGCACATTTTTCATGTACAGTggtttcgttttttattacatAGCCAT : 221799 169 : uProLeuValLeuProSerLeuIleAsnGluAsp<->AsnValThrValArgLeuHis : 186 !|||!!! !:!! !!.!:!! ! :!!||| ||||||||| ! ! eProPheSerValGlyLysIleProAlaGlnAspValAsnValThrPheIleProMet 221800 : ACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATG : 221856 187 : ProSerProCysGluLeuLeuValPheAspSerLysIleThrProValTyrGluIleV : 206 !! !|||! !..! !!!!:!! !!|||!!!::! !!:!|||||| !!||||||: ValPheProPheSerArgPheIleValAspThrArgTyrSerProValAsnGluIleL 221857 : GTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTC : 221916 207 : alTyrLeuLeuGlnThrLeuSerGlyCysThrIleTyrSerAlaPheCysGlyIleCy : 225 !!!:!! !||||||! !:!!:!!|||..! !!!::!!||| ! ! !.! !|| euPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCy 221917 : TGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTG : 221973 226 : sSerLeuMetAlaAsnPheValValHisValCysGlyGlnCysAspValLeuThrLeu : 244 |||||||:!:|||! |||!.!||||||!.!||||||||| .!.||||||! ! ! sSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSer 221974 : CAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGC : 222030 245 : IlePheAspGluThrValAspGlyGlyGluHisAsnArgGlyProIleGluGlyArgI : 264 .!. ! .!. !:!!:!!||| !!! ! !!! !!..! !:!:!!: !!|||| TrpLeuLysHisLeuIleAsnGlyArgAlaAspMetCysAsnAsnValAspArgArgI 222031 : TGGCTGAAACATTTGATCAACGGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAA : 222090 265 : leAlaThrAlaValThrArgHisLeuArgMetLeuArgLeuVal : 278 |||||! ! !|||!.!!:!|||:!!|||!!:|||!:!! !||| leAlaLysIleValAsnGlnHisValArgIleLeuGlnTyrVal 222091 : TAGCGAAGATTGTGAATCAACACGTTCGAATATTGCAGTATGTA : 222134 vulgar: CbirOr5 14 278 . KQ414889.1 221342 222134 + 324 M 29 87 G 2 0 M 121 363 G 0 3 M 13 39 G 0 3 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221343 222134 324 + . gene_id 5 ; sequence CbirOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221343 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221343 222134 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 221343 222134 324 + . alignment_id 5 ; Query CbirOr5 ; Align 221343 15 87 ; Align 221430 46 363 ; Align 221796 167 39 ; Align 221838 180 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 295 Query range: 26 -> 308 Target range: 259772 -> 260878 27 : TyrAlaValGlnIleSerValTyrLeuLeuLysProIleGlyAlaTrpProLeuAspA : 46 |||::!:!!|||.!!!:! !!::!!!|||||||||||||||||||||||| TyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpPro------P 259773 : TATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCA------C : 259824 47 : spAspGluAlaThrSerTrpLeuLysIleAlaValHisLysValSerThrLeuIleAl : 65 !......:!!|||!!! ! |||:!!! !:!! ! :!! !! !!!!|||.. roSerSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCy 259825 : CTTCATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTG : 259881 66 : aThrPheLeuMetLeuPheThrIleValProTrpIleValGlnIleIleLysGluLys : 84 ! ! ! !!!:||| !!|||:!::!!|||!! :!!:!!!!.!!::!! |||||| sTyrSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLys 259882 : CTACAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAG : 259938 85 : TrpSerValIleGlnMetLeuArgThrIleCysProLeuLeuPheThrLeuThrValP : 104 !|||:!! !..!! !!:!..!:!! !!|||||| ! ! !!!!..!! !! GluSerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyC 259939 : GAGAGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCT : 259998 105 : heAlaArgTyrIleLeuLeuMetLeuHisGlnAsnGlnLeuLysSerCysMetAspAr : 123 ! !!.!|||! ! !|||:!!|||... !...!.:!! ||||||:!!!!:!. ysIleAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHi 259999 : GTATTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACA : 260055 124 : gValAlaAspAspTrpArgTyrThrIleIleAlaGluAspArgGluThrMetLeuAla : 142 !|||! !:!!||||||||| !! !! ! ! !:!!|||!:!.!...!|||||| ! sValGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArg 260056 : CGTGGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGA : 260112 143 : AsnAlaArgMetGlyArgThrPheGlyIleValSerValValPheMetPheSerSerG : 162 !!|||!:!.!.|||||| ! !!!.! ! !!!!!.!!.!|||:!! .!!.!!! TyrAlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyV 260113 : TACGCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAG : 260172 163 : lyAlaLeuPhePheSerLeuProLeuValLeuProSerLeuIleAsnGluAspAsnVa : 181 ! !! !|||! !! !:!! !!:!!:!! ! !!..!:!!|||.!.! !! |||! alLeuCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGl 260173 : TTCTGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGA : 260229 182 : lThrValArgLeuHisProSerProCysGluLeuLeu<-><->ValPheAspSerLys : 198 !||| !! !:!!|||! !! !||||||! !:!!! ! :!!.!.:!! !!!. uThrArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsn 260230 : GACGAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAAC : 260286 199 : IleThrProValTyrGluIleValTyrLeuLeuGlnThrLeuSerGlyCysThrIleT : 218 !!:!|||:!! !!||||||||| !:!!:!!||| !:!!||||||! !! !:!: AspSerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValA 260287 : GACAGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGA : 260346 219 : yrSerAlaPheCysGlyIleCysSerLeuMetAlaAsnPheValValHisValCysGl : 237 !!|||::! ! !||||||! !|||||| !||| !.!...!!.!|||!.!||||| snSerSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGl 260347 : ATTCGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGG : 260403 238 : yGlnCysAspValLeuThrLeuIlePheAspGluThrValAspGlyGlyGluHisAsn : 256 ||||! :!!||||||! ! ! .!! ||| !||||||! !..!..!:!!!.. yGlnLeuAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArg 260404 : CCAGTTGAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGG : 260460 257 : ArgGlyProIleGluGlyArg<->IleAlaThrAlaValThrArgHisLeuArgMetL : 275 !:! ! ! ! !!:! |||!.!..! !||| !!.!||||||||| | LysLysLysAlaProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaL 260461 : AAGAAAAAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCAC : 260520 276 : eu{Ar} >>>> Target Intron 1 >>>> {g}LeuValSerAspValSerGl : 283 ||{! } 257 bp {!}!!!:!!||| !:!!..!! eu{Th}++ ++{r}PheIleSerArgIleGluAs 260521 : TC{AC}gt.........................ag{C}TTCATATCGCGTATCGAGGA : 260801 284 : yLeuPheThrGluIleCysLeuValGluPheIleGlnAlaSerCysAsnIleCysLeu : 302 !:!!.!.!.!..!||||||!!!:!!|||!!..!!::!..!!!! :!!||||||||| pValMetAsnArgIleCysPheLeuGluLeuPheArgCysThrLeuAspIleCysLeu 260802 : TGTGATGAACCGGATATGCTTCCTGGAGTTGTTCAGGTGCACTCTGGATATATGTCTA : 260858 303 : IleGlyTyrTyrIleIle : 308 :!!||||||||||||:!! LeuGlyTyrTyrIleLeu 260859 : CTTGGCTACTATATTCTT : 260878 vulgar: CbirOr5 26 308 . KQ414889.1 259772 260878 + 295 M 17 51 G 2 0 M 148 444 G 0 6 M 70 210 G 0 3 M 12 36 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259773 260878 295 + . gene_id 6 ; sequence CbirOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259773 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259773 260524 . + . insertions 9 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260878 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260878 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259773 260878 295 + . alignment_id 6 ; Query CbirOr5 ; Align 259773 27 51 ; Align 259824 46 444 ; Align 260274 194 210 ; Align 260487 264 36 ; Align 260783 277 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 292 Query range: 12 -> 276 Target range: 303154 -> 304869 13 : AspValThrLysGluAsnGluGlnHisValSerAspPheArgTyrAlaValGlnIleS : 32 ||| !! ! !..!||| !.!.:!! !!.!|||.!! !|||!.!..!:!! !| AspArgLysProArgAsnLeuAsnTyrLysLysAspIleValTyrValThrLysHisS 303155 : GATCGGAAACCGCGGAATTTGAATTACAAGAAAGATATCGTTTACGTTACAAAGCACA : 303212 33 : erValTyrLeuLeuLysProIleGlyAlaTrpProLeuAspAspAspGluAlaThrSe : 51 || !!:::!!|||||| !!:!!||| !|||||| !! ||||||.!!.!!.! erLysTrpIleLeuLysSerLeuGlyIleTrpProAlaValLeuAspGluThrAlaGl 303213 : GCAAATGGATCCTGAAGTCCCTTGGTATTTGGCCAGCCGTGTTGGACGAAACCGCAGG : 303269 52 : rTrpLeuLysIleAlaValHisLysValSerThrLeuIleAlaThrPheLeuMetLeu : 70 !!::||| ! |||:!!!!!! ! !:!!::!!.!!!.:!!:!:||| yPheLeuPro------------LysIleThrIleGlyLeuSerAsnLeuValLeuLeu 303270 : ATTCCTACCA------------AAAATCACCATTGGACTCAGTAATTTGGTTCTATTA : 303314 71 : PheThrIleValProTrpIleValGlnIleIleLysGluLysTrpSerValIleGlnM : 90 ||||||:!::!!|||!! |||:!!!!.|||||| |||:!! !..!..!||| !! PheThrValIleProCysIleLeuHisIleIlePheGluGlnLysAspThrIleIleA 303315 : TTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAAAGGATACGATAATAA : 303374 91 : etLeuArgThrIleCysProLeuLeuPheThrLeuThrValPheAlaArgTyrIleLe : 109 |||!:! !.!! !!! !||| !||| !|||! ! !!!. !!:!||| rgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLeuMetLysTyrTrpAl 303375 : GATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTTGATGAAGTATTGGGC : 303431 110 : uLeuMetLeuHisGlnAsnGlnLeuLysSerCysMetAspArgValAlaAspAspTrp : 128 !||| !!..:!! ::!:!!|||..!|||!!:!!:..!||| !..!|||||| aLeuAlaThrArgLysProArgIleLysGluCysIleGluGluValGlnSerAspTrp 303432 : CCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAGGTGCAAAGTGATTGG : 303488 129 : ArgTyr >>>> Target Intron 1 >>>> ThrIleIleAlaGluAspArgGl : 138 !:! ! 938 bp ..! ! ! !..!|||||||| LysGlu++ ++ValGluSerLeuArgAspArgGl 303489 : AAAGAGgt.........................agGTGGAATCTCTCAGAGATCGTGA : 304456 139 : uThrMetLeuAlaAsnAlaArgMetGlyArgThrPheGlyIleValSerValValPhe : 157 |! !|||||| ! !!!.!!:!|||||||||!.!.!. !|||:!!!!!!.!:!!||| uMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePhe 304457 : AATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTT : 304513 158 : MetPheSerSerGlyAlaLeuPhePheSer<->LeuProLeuValLeuProSerLeuI : 176 |||!:!!!!.!!|||.!!:!!!:! !!!! :!!! !!!!!.! ! !!!!! !: MetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheAlaThrGlyThrTyrV 304514 : ATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATG : 304573 177 : leAsnGluAspAsnValThrValArgLeuHisProSerProCysGluLeuLeuValPh : 195 !::!!||| !!||| !|||:!!!:!! !! ! !! !||| ! ! ! !:!!|| alAspGluTyrAsnArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPh 304574 : TGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATT : 304630 196 : eAspSerLysIleThrProValTyrGluIleValTyrLeuLeuGlnThrLeuSerGly : 214 |||| !:!!! !!:!|||:!!||||||:!:||||||!!!:!!!!. !:!!!!!||| eAspValGlnThrSerProIleTyrGluLeuValTyrPheValHisCysMetCysGly 304631 : TGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGA : 304687 215 : CysThrIleTyrSerAlaPheCysGlyIleCysSerLeuMetAlaAsnPheValValH : 234 ! !..!||||||||| ! !..!||| !|||.!!||| ||| !|||!.!..!| TyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrH 304688 : TACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACAC : 304747 235 : isValCysGlyGlnCysAspValLeuThrLeuIlePheAspGluThrValAspGlyGl : 253 ||!.!||||||||| !|||:!!:!!! !! ! !!!.! !!!: !|||:!!.!! isAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAspLeuValAsnSerLy 304748 : ACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAA : 304804 254 : yGluHisAsnArgGlyProIleGluGlyArgIleAlaThrAlaValThrArgHisLeu : 272 !||| ::! !:!!!!: !|||:!! ! ! !||| !!.!|||||| sGluSerSer------AspLeuAspLysArgLeuIleGluIleValGluHisHisLeu 304805 : AGAATCATCT------GATTTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTG : 304855 273 : ArgMetLeuArg : 276 |||!!:|||||| ArgIleLeuArg 304856 : CGAATTTTAAGG : 304869 vulgar: CbirOr5 12 276 . KQ414889.1 303154 304869 + 292 M 42 126 G 4 0 M 72 216 5 0 2 I 0 934 3 0 2 M 37 111 G 0 3 M 89 267 G 2 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303155 304869 292 + . gene_id 7 ; sequence CbirOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303155 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303155 303496 . + . insertions 0 ; deletions 4 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304869 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304869 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 303155 304869 292 + . alignment_id 7 ; Query CbirOr5 ; Align 303155 13 126 ; Align 303281 59 216 ; Align 304435 131 111 ; Align 304549 168 267 ; Align 304816 259 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 279 Query range: 12 -> 279 Target range: 232417 -> 233218 13 : AspValThrLysGluAsnGluGlnHisValSerAspPheArgTyrAlaValGlnIleS : 32 ||| !:!!:::!!:!.. !.!. !..! !!|||!:!..!|||::!:!!|||:!:! AspSerSerArgAspThrLeuAsnAlaThrArgAspTyrGluTyrSerIleGlnValA 232418 : GACTCGTCCCGCGACACGTTGAACGCTACGCGAGACTACGAGTACAGCATCCAGGTGA : 232475 33 : erValTyrLeuLeuLysProIleGlyAlaTrpProLeuAspAspAspGluAlaThrSe : 51 :! !!::!!!|||! !|||!!:||||||||||||! !! ! !!: ||||| snArgTrpPheLeuThrProMetGlyAlaTrpProArgValThrGlu------ThrSe 232476 : ACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTGTTACAGAG------ACCTC : 232526 52 : rTrpLeuLysIleAlaValHisLysValSerThrLeuIleAlaThrPheLeuMetLeu : 70 | ! !:!! ! !:!! |||:!!! !! !|||! !..! !! !||||||:!! rArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHisSerLeuMetIle 232527 : GAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCATTCTCTGATGATC : 232583 71 : PheThrIleValProTrpIleValGlnIleIleLysGluLysTrpSerValIleGlnM : 90 ! !:!!|||||||||!! |||:!! |||:!: ||| ! !|||:!! :!!! SerSerIleValProCysIleLeuPheIleLeuPheGluAspThrSerLeuGluGluA 232584 : TCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACGAGCCTAGAGGAAA : 232643 91 : etLeuArgThrIleCysProLeuLeuPheThrLeuThrValPheAlaArgTyrIleLe : 109 !:!!!:!:!!||| !!|||:!! ! ! !|||! !! ! !!.!||| !! rgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluLeuAsnTyrCysCy 232644 : GGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAATTGAATTATTGCTG : 232700 110 : uLeuMetLeuHisGlnAsnGlnLeuLysSerCysMetAspArgValAlaAspAspTrp : 128 !|||:!! ! ! !|||.!.:!! ! !|||:!!!!:!:!||| !.!.|||||| sLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnValLysGlnAspTrp 232701 : CTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGTGAAACAGGACTGG : 232757 129 : ArgTyrThrIleIleAlaGluAspArgGluThrMetLeuAlaAsnAlaArgMetGlyA : 148 ||| !!..!! ! ! !!! !!|||!!: !|||||| !||||||!:!:!:|||| ArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsnAlaLysLeuGlyA 232758 : CGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAACGCGAAACTTGGAC : 232817 149 : rgThrPheGlyIleValSerValValPheMetPheSerSerGlyAlaLeuPhePheSe : 167 ||:!!.!.!.! !:!!:!!!.! !!! !||| !!!!.!!! !!.!! ! ! ! rgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValGlySerAspGluIl 232818 : GTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCGGCTCCGACGAAAT : 232874 168 : rLeuProLeuValLeuProSerLeuIleAsnGluAspAsnValThrValArgLeuHis : 186 !:!! !! !:!!! ! !||| !.!! !!! !! |||! !!:! ! !:!!:!! eValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSerTyrSerMetTyr 232875 : AGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAGTTACTCGATGTAC : 232931 187 : ProSerProCysGluLeuLeu<-><->ValPheAspSerLysIleThrProValTyrG : 204 |||! !|||||| !!!!! ! :!!.!.|||!!!!:!.!!!:!|||..! !!| ProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPheSerProThrAsnG 232932 : CCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTCAGTCCGACGAACG : 232991 205 : luIleValTyrLeuLeuGlnThrLeuSerGlyCysThrIleTyrSerAlaPheCysGl : 223 |||||:!!!:!:!!|||||| !|||||||||! !! !:!: !!|||!.! ! || luIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnSerValThrValGl 232992 : AGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGG : 233048 224 : yIleCysSerLeuMetAlaAsnPheValValHisValCysGlyGlnCysAspValLeu : 242 | !|||.!!||| ||| !.!.!.!:!!|||!.!||||||||| :!!|||:!! yAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGlnLeuAsnValVal 233049 : AGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACAGCTGAACGTGGTG : 233105 243 : ThrLeuIlePheAspGluThrValAspGlyGlyGluHisAsnArgGlyProIleGluG : 262 ! !! !! !!!.|||!!: !||||||!.! !! !!!..!...! !! ! :!! MetSerLysLeuAspAspLeuValAspAlaLysGlyGlnGluGluArgValAlaGlnA 233106 : ATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAGGAGGAGAGAGTCGCGCAGA : 233165 263 : lyArgIleAlaThrAlaValThrArgHisLeuArgMetLeuArgLeuValSer : 279 !!!:!:!!!.! ! !||| !!.!|||||||||! ||||||! !:!!||| rgLysLeuGlyPheIleValGluHisHisLeuArgThrLeuArgTyrLeuSer 233166 : GGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTAAGGTATTTGTCT : 233218 vulgar: CbirOr5 12 279 . KQ414889.1 232417 233218 + 279 M 35 105 G 2 0 M 144 432 G 0 6 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232418 233218 279 + . gene_id 8 ; sequence CbirOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232418 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232418 233218 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 232418 233218 279 + . alignment_id 8 ; Query CbirOr5 ; Align 232418 13 105 ; Align 232523 50 432 ; Align 232961 194 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 279 Query range: 26 -> 318 Target range: 256652 -> 257607 27 : TyrAlaValGlnIleSerValTyrLeuLeuLysProIleGlyAlaTrpProLeuAspA : 46 |||::!:!!|||:!:!:! !!::!!!|||||||||||||||||||||||| TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpPro------P 256653 : TACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCA------C : 256704 47 : spAspGluAlaThrSerTrpLeuLysIleAlaValHisLysValSerThrLeuIleAl : 65 !.....!:!!|||!!! |||:!! ! !||| ! |||! !!.!:!!:!!.. roSerSerSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCy 256705 : CCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTG : 256761 66 : aThrPheLeuMetLeuPheThrIleValProTrpIleValGlnIleIleLysGluLys : 84 ! ! !! !!!:|||||||||:!::!!|||!! :!::!!!!.:!!.!! !!: ! sTyrGlySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAsp 256762 : CTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGAC : 256818 85 : TrpSerValIleGlnMetLeuArgThrIleCysProLeuLeuPheThrLeuThrValP : 104 ||| !! ... ::::::...... |||:!! ! ! !:!!! ! !! AspSerPheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerC 256819 : GACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCT : 256878 105 : heAlaArgTyrIleLeuLeuMetLeuHisGlnAsnGlnLeuLysSerCysMetAspAr : 123 !|||!.!|||! ||||||:!!|||!!. !!!..!.:!!:::! !|||:!:!!:!. ysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHi 256879 : GTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCA : 256935 124 : gValAlaAspAspTrpArgTyrThrIleIleAlaGluAspArgGluThrMetLeuAla : 142 !:!!! ! ||||||||| ..!! ! ! !:!!|||!:!:!!..!|||:!! ! sIleGluThrAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLys 256936 : TATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAG : 256992 143 : AsnAlaArgMetGlyArgThrPheGlyIleValSerValValPheMetPheSerSerG : 162 |||||||||.!.|||||| ! ! !.!! ! !!!!!!.!!.!.!!||| |||.!! AsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyV 256993 : AACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCg : 257052 163 : lyAlaLeuPhePheSerLeuProLeuValLeuProSerLeuIleAsnGluAspAsnVa : 181 |||||| !! ! !! !:!! ! !!..!:!!|||:!!! !! |||! alPheCysPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGl 257053 : ttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGA : 257109 182 : lThr<-><->ValArgLeuHisProSerProCysGluLeuLeuValPheAspSerLys : 198 !||| ||||||:!!! ||| ! !! ! ! !:!!!!.:!! ! ! uThrThrIleValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAsp 257110 : AACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGAT : 257166 199 : IleThrProValTyrGluIleValTyrLeuLeuGlnThrLeuSerGlyCysThrIleT : 218 !:!|||..! !!||||||||| !!!!:!!||||||! !|||..! !! ! GlnSerProThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaT 257167 : CAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGA : 257226 219 : yrSerAlaPheCysGlyIleCysSerLeuMetAlaAsnPheValValHisValCysGl : 237 !!!!::! !.!!|||! !|||||| !||| !|||!.!..!|||!.!! !|| hrThrSerThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGl 257227 : CTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGG : 257283 238 : yGlnCysAspValLeuThrLeuIlePheAspGluThrValAspGlyGlyGluHisAsn : 256 ||||! !||||||! !! ! .!. ||| !|||:!!! !..!..!:!!... yGlnLeuThrValLeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArg 257284 : TCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGg : 257340 257 : ArgGlyProIleGlu<->GlyArgIleAlaThrAlaValThrArgHisLeuArgMetL : 275 ... ... !!:!|||!.!..! !||| !!.!|||||||||:!!| GluLysThrPheProPheLysGlnIleGlyValIleValGluHisHisLeuArgValL 257341 : gagaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGC : 257400 276 : eu{Ar} >>>> Target Intron 1 >>>> {g}LeuValSerAspValSerGl : 283 ||{!!} 76 bp {!}!!!:!!||| !!:!!..!! eu{Se}++ ++{r}PheIleSerTyrIleGluGl 257401 : TG{AG}gt.........................ag{T}TTCATATCATATATCGAGGA : 257500 284 : yLeuPheThrGluIleCysLeuValGluPheIleGlnAlaSerCysAsnIleCysLeu : 302 !:!!.!.!.!..!||||||!!!:!!|||!!..!!::!..!!!! !||||||:!! uValMetAsnArgIleCysPheLeuGluLeuPheArgCysThrLeuAlaIleCysMet 257501 : AGTGATGAACCGAATATGTTTTTTAGAGTTGTTTAGATGCACGCTGGCTATATGCATG : 257557 303 : IleGlyTyrTyrIleIleThrAspLeuAsnAsnAsnGluSerPheVal : 318 :!:||||||||||||:!!.!!! ! !|||!!.:!!.....!.!!||| LeuGlyTyrTyrIleLeuAlaValArgAsnLysAspSerAspIleVal 257558 : CTGGGATACTACATTCTTGCGGTACGTAATAAAGATAGCGATATTGTT : 257607 vulgar: CbirOr5 26 318 . KQ414889.1 256652 257607 + 279 M 17 51 G 2 0 M 137 411 G 0 6 M 79 237 G 0 3 M 14 42 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256653 257607 279 + . gene_id 9 ; sequence CbirOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256653 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256653 257404 . + . insertions 9 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257607 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257607 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256653 257607 279 + . alignment_id 9 ; Query CbirOr5 ; Align 256653 27 51 ; Align 256704 46 411 ; Align 257121 183 237 ; Align 257361 262 42 ; Align 257482 277 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 273 Query range: 22 -> 258 Target range: 284511 -> 285228 23 : SerAspPheArgTyrAlaValGlnIleSerValTyrLeuLeuLysProIleGlyAlaT : 42 !!!|||!::! !|||::!||||||!!:!:! !!::!!!|||||||||||||||!.!| ThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValT 284512 : ACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTAT : 284569 43 : rpProLeuAspAspAspGluAlaThrSerTrpLeuLysIleAlaValHisLysValSe : 61 |||||||| ..! ..!..!!!! |||:!!! ! ! ! !||| rpProLeu------SerLeuCysValThrThrLeuGluLysIleSerSerValValLe 284570 : GGCCTCTC------AGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCT : 284620 62 : rThrLeuIleAlaThrPheLeuMetLeuPheThrIleValProTrpIleValGlnIle : 80 !.!!||||||::! !||||||!!: !||| !:!:||||||!! !:!! ! ! uAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThr 284621 : CGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACA : 284677 81 : IleLysGluLysTrpSerValIleGln<->MetLeuArgThrIleCysProLeuLeuP : 99 :!: !!:||| .!!! !:!!.!. ! !:!!!:!! !||| !!|||||| !| ValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerP 284678 : GTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTT : 284737 100 : heThrLeuThrValPheAlaArgTyrIleLeuLeuMetLeuHisGlnAsnGlnLeuLy : 118 || !:!!! !!.! !!:!||| !:!!|||!!:! !!.! ..!:!!:!! heCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGl 284738 : TCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGG : 284794 119 : sSerCysMetAspArgValAlaAspAspTrpArgTyrThrIleIle<-><-><->Ala : 134 ..!|||:!! ! !:!! !! |||||| ! !|||:!! yGlnCysValLysAspIleArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGlu 284795 : CCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaa : 284851 135 : GluAspArgGluThrMetLeuAlaAsnAlaArgMetGlyArgThrPheGlyIleValS : 154 |||:::|||||| ||| !! !!:!||||||!!:||||||:!!!!.!.!||| !!! GluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheC 284852 : gaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCT : 284911 155 : erValValPheMetPheSerSerGlyAlaLeuPhePheSer<->LeuProLeuValLe : 172 !!!.!! !||||||!:!|||.!!||| !!!!!:! !!!! :!!|||||| ! ysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysTh 284912 : GCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCAC : 284968 173 : uProSerLeuIleAsnGluAspAsnValThrValArgLeuHisProSerProCysGlu : 191 ! ! !! ! ! ! ||||||! !|||||||||! !!!. !!! !||| ! ! rValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyr 284969 : AGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTAT : 285025 192 : LeuLeuValPheAspSerLysIleThrProValTyrGluIleValTyrLeuLeuGlnT : 211 ! ! !:!!.!!||| !!:::! !!:!||| !!:!||||||||| ! !!!:!!||| ArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnC 285026 : CGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAAT : 285085 212 : hrLeuSerGlyCysThrIleTyrSerAlaPheCysGlyIleCysSerLeuMetAlaAs : 230 !|||:!!!.!! !..!|||||||||!.! ! !||| !||||||||| ||| ysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaVa 285086 : GCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGT : 285142 231 : nPheValValHisValCysGlyGlnCysAspValLeuThrLeuIlePheAspGluThr : 249 ||||||:!!|||||||||||||||! ! :!!|||..! !! .!.|||:!! ! lPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeu 285143 : GTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTC : 285199 250 : ValAspGlyGlyGluHisAsnArgGly : 258 |||||||||! !:!! !..!:!||| ValAspGlyValLysGlyArgLysGly 285200 : GTCGACGGAGTGAAAGGGAGGAAGGGG : 285228 vulgar: CbirOr5 22 258 . KQ414889.1 284511 285228 + 273 M 22 66 G 2 0 M 43 129 G 0 3 M 44 132 G 0 9 M 34 102 G 0 3 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284512 285228 273 + . gene_id 10 ; sequence CbirOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284512 285228 . + . KQ414889.1 exonerate:protein2genome:local exon 284512 285228 . + . insertions 15 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 284512 285228 273 + . alignment_id 10 ; Query CbirOr5 ; Align 284512 23 66 ; Align 284578 47 129 ; Align 284710 90 132 ; Align 284851 134 102 ; Align 284956 168 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 269 Query range: 26 -> 309 Target range: 274383 -> 275309 27 : TyrAlaValGlnIleSerValTyrLeuLeuLysProIleGlyAlaTrpProLeuAspA : 46 |||::!:!!|||:!:!:! !!::!!!||||||||||||||||||||||||||| ! TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeu---A 274384 : TACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTA---G : 274438 47 : spAspGluAlaThrSerTrpLeuLysIleAlaValHisLysValSerThrLeuIleAl : 65 !... .!!|||!.!!:: !::!||| ! !||| ::: ||| laSerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTy 274439 : CCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctA : 274495 66 : aThrPheLeuMetLeuPheThrIleValProTrpIleValGlnIleIleLysGluLys : 84 ! !|||:!! |||! !|||:!!:!!||| ! ||| !!!!.|||||| !! ! ! rCysPheIle---LeuSerThrValIleProSerIlePheHisIleIleLeuValAsp 274496 : CTGCTTCATA---CTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGAT : 274549 85 : TrpSerValIleGlnMetLeuArgThrIleCysProLeuLeuPheThrLeuThrValP : 104 |||:!! !! !! !|||!:! !:!! !!|||||| ! ! !!!!! !! ! GluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyG 274550 : GAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAG : 274609 105 : heAlaArgTyrIleLeuLeuMetLeuHisGlnAsnGlnLeuLysSerCysMetAspAr : 123 !!.!|||! ! !|||:!!|||!.!...!!.:!!:!!:::.!!|||:!!!!:!. lyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHi 274610 : GAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCA : 274666 124 : gValAlaAspAspTrpArgTyrThrIleIleAlaGluAspArgGluThrMetLeuAla : 142 !:!! ! ||||||||| !..!! !! ! !!||||||!:!:!!..!|||||| ! sMetGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLys 274667 : CATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAG : 274723 143 : AsnAlaArgMetGlyArgThrPheGlyIleValSerValValPheMetPheSerSerG : 162 ||||||!:!!!:|||||| ! !!!.!||| !!!!!!.!!.!|||||| !!!.!!! AsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyV 274724 : AACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTG : 274783 163 : lyAlaLeuPhePheSerLeuProLeuValLeuProSerLeuIleAsnGluAspAsnVa : 181 ! !! !!:!! ! !:!! !! ! !! ! !..! !:!!.!.! !! |||! alLeuCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGl 274784 : TTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGA : 274840 182 : lThrValArgLeuHisProSerProCysGluLeuLeu<-><->ValPheAspSerLys : 198 !||| !! !:!!||| !! !||||||:!! !! ! :!! !!! ! ! uThrArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAsp 274841 : GACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGAC : 274897 199 : IleThrProValTyrGluIleValTyrLeuLeuGlnThrLeuSerGlyCysThrIleT : 218 ! !:!|||..! !!||||||||| ! !! !||| !:!!||||||! !! !:!: ThrSerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValA 274898 : ACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGA : 274957 219 : yrSerAlaPheCysGlyIleCysSerLeuMetAlaAsnPheValValHisValCysGl : 237 !!|||::! !||| !! !|||||| ||| |||!.!!.!|||!.!! !|| snSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGl 274958 : ATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGG : 275014 238 : yGlnCysAspValLeuThrLeuIlePheAspGluThrValAsp<->GlyGlyGluHis : 255 ||||! ..!||||||! !:!! .!! !||| !|||:!! ..! !!!!:... yGlnLeuSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGln 275015 : CCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcag : 275071 256 : AsnArgGlyProIleGluGlyArgIleAlaThrAlaValThrArgHisLeuArgMetL : 275 |||:::... ..!..!|||!.!..!!.!||| !!.!|||||||||:!:| AsnLysAsnValTyrPheSerGluIleGlyValValValGluHisHisLeuArgValL 275072 : aataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTAC : 275131 276 : euArgLeuVal{S} >>>> Target Intron 1 >>>> {er}AspValSerGl : 283 ||||| !{:} 77 bp {!!} !:!!..!! euArg---***{A}++ ++{la}ArgIleGluAs 275132 : TCAGG---TAA{G}gt.........................ag{CA}CGTATCGAGGA : 275229 284 : yLeuPheThrGluIleCysLeuValGluPheIleGlnAlaSerCysAsnIleCysLeu : 302 !:!!.!.!.!..!||||||!!!:!!|||!!..!!:!!..!!!! :!!!!:|||:!! pValMetAsnArgIleCysPheMetGluLeuPheLysCysThrLeuAspMetCysMet 275230 : TGTGATGAATCGAATATGCTTCATGGAATTGTTCAAGTGTACTCTGGATATGTGCATG : 275286 303 : IleGlyTyrTyrIleIleThr : 309 :!!||||||||||||:!!||| LeuGlyTyrTyrIleLeuThr 275287 : CTTGGCTATTACATTCTCACG : 275309 vulgar: CbirOr5 26 309 . KQ414889.1 274383 275309 + 269 M 18 54 G 1 0 M 23 69 G 1 0 M 124 372 G 0 6 M 58 174 G 0 3 M 25 75 G 1 0 M 1 3 S 0 1 5 0 2 I 0 73 3 0 2 S 1 2 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274384 275309 269 + . gene_id 11 ; sequence CbirOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274384 275140 . + . KQ414889.1 exonerate:protein2genome:local exon 274384 275140 . + . insertions 9 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 275141 275142 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275141 275217 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275216 275217 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275218 275309 . + . KQ414889.1 exonerate:protein2genome:local exon 275218 275309 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274384 275309 269 + . alignment_id 11 ; Query CbirOr5 ; Align 274384 27 54 ; Align 274438 46 69 ; Align 274507 70 372 ; Align 274885 194 174 ; Align 275062 252 75 ; Align 275137 278 3 ; Align 275220 280 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 263 Query range: 6 -> 309 Target range: 262789 -> 263773 7 : ArgSerAlaSerAlaThrAspValThrLysGluAsnGluGlnHisValSerAspPheA : 26 ||| ! ! !!!.!..! :!!||| ! !!: |||... !! !||| ! ! ArgHisArgArgValValThrMetThrAspAspLeuGluSerPheGlySerLeuSerA 262790 : CGACATCGACGAGTTGTCACGATGACCGACGACCTGGAAAGTTTCGGCAGTCTCAGCG : 262847 27 : rgTyrAlaValGlnIleSerValTyrLeuLeuLysProIleGlyAlaTrpProLeuAs : 45 !|||::!:!!||||||!:! !!::|||||||||||||||||||||||||||||| spTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeu-- 262848 : ACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTG-- : 262904 46 : pAspAspGluAlaThrSerTrpLeuLysIleAlaValHisLysValSerThrLeuIle : 64 ..!! :!!! !||| ! :!!:!! ! !:!! :!!! !! !:!!:!! ----SerAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValVal 262905 : ----TCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTC : 262955 65 : AlaThrPheLeuMetLeuPheThrIleValProTrpIleValGlnIleIleLysGluL : 84 ..! !! !|||!!:|||! !|||:!!:!!|||! |||:!!!!.|||:!! !||| CysTyrCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluA 262956 : TGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAG : 263015 85 : ysTrpSerValIleGlnMetLeuArgThrIleCysProLeuLeuPheThrLeuThrVa : 103 !!:! !! !..!! !|||!:!..!:!! !!|||||| ! !!!!..!! laGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGl 263016 : CCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGG : 263072 104 : lPheAlaArgTyrIleLeuLeuMetLeuHisGlnAsnGlnLeuLysSerCysMetAsp : 122 !.!. !!.!|||! !! !|||:!!||||||...!!..!.:!!:!!.!!|||:!!.!. yMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGln 263073 : TATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAA : 263129 123 : ArgValAlaAspAspTrpArgTyrThrIleIleAlaGluAspArgGluThrMetLeuA : 142 !.!||| !!!:|||||| !! !..!! !! !||||||!:!...! !|||||| HisValGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuL 263130 : CACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGA : 263189 143 : laAsnAlaArgMetGlyArgThrPheGlyIleValSerValValPheMetPheSerSe : 161 !||||||!:! |||||| ! ! !.! ! !!!!!.!:!!|||||| !!!|| ysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSe 263190 : AGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAG : 263246 162 : rGlyAlaLeuPhePheSerLeuProLeuValLeuProSerLeuIleAsnGluAspAsn : 180 | ! !! ! ! ! !:!! !! ! !! ! !!..!:!!|||.!.!!:! !||| rIleMetCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsn 263247 : CATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAAC : 263303 181 : ValThr<-><->ValArgLeuHisProSerProCysGluLeuLeuValPheAspSerL : 198 ! !||| :!!|||:!!! |||!!!||| ! ! !:!!.!! ! GluThrArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValA 263304 : GAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCG : 263363 199 : ysIleThrProValTyrGluIleValTyrLeuLeuGlnThrLeuSerGlyCysThrIl : 217 ! ! !.!|||..! !!|||||| !! ! ! !||| !|||||||||! !! !:! spThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleVa 263364 : ACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGT : 263420 218 : eTyrSerAlaPheCysGlyIleCysSerLeuMetAlaAsnPheValValHisValCys : 236 ! !:!!.!! ! !||| !! !.!!:!!! ||| |||!.!! !|||!.!||| lThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCys 263421 : CACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGC : 263477 237 : GlyGlnCysAspValLeuThrLeuIlePheAspGluThrValAsp<->GlyGlyGluH : 255 ||||||! :!!||||||! !! ! .!! ||| !|||:!! ..! !!!!:. GlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspG 263478 : GGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATG : 263537 256 : isAsnArgGlyProIleGluGlyArgIleAlaThrAlaValThrArgHisLeuArg{M : 274 !.|||!:!..!! ! ! !..!|||!.!..! !||| !!.!|||||||||{ luAsnLysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArg{A 263538 : AGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGA{G : 263594 275 : } >>>> Target Intron 1 >>>> {et}LeuArgLeuValSerAspValSer : 282 } 72 bp { }! !!!!!!!:!!..! !:!!!.! }-+ -+{sp}CysSerPheIleAspArgIleLys 263595 : }tt.........................cg{AT}TGTAGTTTCATAGATCGTATTAAG : 263690 283 : GlyLeuPheThrGluIleCysLeuValGluPheIleGlnAlaSerCysAsnIleCysL : 302 ..!:!!.!.!:! !||||||!!!||||||!!..!!:!!|||!!! :!!||||||: AsnValMetSerThrIleCysPheValGluLeuPheLysAlaThrLeuAspIleCysM 263691 : AATGTGATGAGTACGATATGTTTCGTGGAGTTATTCAAGGCTACGCTGGATATATGCA : 263750 303 : euIleGlyTyrTyrIleIleThr : 309 !!:!!||||||||||||:!!||| etLeuGlyTyrTyrIleLeuThr 263751 : TGCTAGGTTACTACATACTTACG : 263773 vulgar: CbirOr5 6 309 . KQ414889.1 262789 263773 + 263 M 38 114 G 2 0 M 136 408 G 0 6 M 69 207 G 0 3 M 22 66 S 0 1 5 0 2 I 0 68 3 0 2 S 1 2 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262790 263773 263 + . gene_id 12 ; sequence CbirOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262790 263594 . + . KQ414889.1 exonerate:protein2genome:local exon 262790 263594 . + . insertions 9 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 263595 263596 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 263595 263666 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263665 263666 . + . intron_id 0 ; splice_site "CG" KQ414889.1 exonerate:protein2genome:local cds 263667 263773 . + . KQ414889.1 exonerate:protein2genome:local exon 263667 263773 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262790 263773 263 + . alignment_id 12 ; Query CbirOr5 ; Align 262790 7 114 ; Align 262904 47 408 ; Align 263318 183 207 ; Align 263528 252 66 ; Align 263669 275 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 258 Query range: 26 -> 276 Target range: 266637 -> 267390 27 : TyrAlaValGlnIleSerValTyrLeuLeuLysProIleGlyAlaTrpProLeuAspA : 46 |||::!:!!|||:!:!:! !!::!!!|||||||||||||||||||||||| TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpPro------P 266638 : TACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCG------C : 266689 47 : spAspGluAlaThrSerTrpLeuLysIleAlaValHisLysValSerThrLeuIleAl : 65 ..! !|||||| |||:!! ! !||| ! ! !.!! !! !:!!|||.. roLeuSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCy 266690 : CGTTGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTG : 266746 66 : aThrPheLeuMetLeuPheThrIleValProTrpIleValGlnIleIleLysGluLys : 84 ! !! !! !!!:|||||||||:!!:!!|||!! :!: !!!!.:!!:!! !||| ! sTyrCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAsp 266747 : CTACTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGAC : 266803 85 : TrpSerValIleGlnMetLeuArgThrIleCysProLeuLeuPheThrLeuThrValP : 104 !|||:!! ! !! :!!!:!..!.!! !!|||||| ! ! !!!!..!! ! GluSerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyG 266804 : GAGAGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAG : 266863 105 : heAlaArgTyrIleLeuLeuMetLeuHisGlnAsnGlnLeuLysSerCysMetAspAr : 123 !!.!|||! ! !|||:!!|||!.!...!!.:!!:!!:::.!!|||:!:!!:!. lyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHi 266864 : GAATTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCA : 266920 124 : gValAlaAspAspTrpArgTyrThrIleIleAlaGluAspArgGluThrMetLeuAla : 142 !:!! ! ||||||||| !..!! !! ! !!||||||!:!:!!..!|||||| ! sMetGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLys 266921 : CATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAG : 266977 143 : AsnAlaArgMetGlyArgThrPheGlyIleValSerValValPheMetPheSerSerG : 162 |||||||||!!:|||||| !.!!!.!||| !!!!!!.!!.!|||||| !!!.!!! AsnAlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyV 266978 : AACGCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTG : 267037 163 : lyAlaLeuPhePheSerLeuProLeuValLeuProSerLeuIleAsnGluAspAsnVa : 181 ! ! !!:!! ! !:!! !! ! !! ! !..! !:!:.!.! ! !|||! alLeuGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGl 267038 : TTCTCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGA : 267094 182 : lThrValArgLeuHisProSerProCysGluLeuLeu<-><->ValPheAspSerLys : 198 !||| !! !:!!|||! !! !||||||! !:!!! ! :!!.!!! ! ! uThrArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAsp 267095 : GACTAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGAT : 267151 199 : IleThrProValTyrGluIleValTyrLeuLeuGlnThrLeuSerGlyCysThrIleT : 218 ! !!:!|||..! !!||||||||| !:!!! !||| !:!!||||||! !! !:!: ThrSerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValA 267152 : ACCAGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGA : 267211 219 : yrSerAlaPheCysGlyIleCysSerLeuMetAlaAsnPheValValHisValCysGl : 237 !!|||::! !! !||| !! !|||||| ||| |||!.!!.!|||!.!||||| snSerSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGl 267212 : ATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGG : 267268 238 : yGlnCysAspValLeuThrLeuIlePheAspGluThrValAsp<->GlyGlyGluHis : 255 |||| ..!||||||! !:!! .!! ! ||| !|||:!! ..! !!!!: ! yGlnLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSer 267269 : ACAGCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGC : 267325 256 : AsnArgGlyProIleGluGlyArgIleAlaThrAlaValThrArgHisLeuArgMetL : 275 |||!:!..! ! ! ! !!:!|||!.!..!!.!||| !!.!|||||||||:!:| AsnLysAsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValL 267326 : AATAAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTT : 267385 276 : euArg : 276 ||||| euArg 267386 : TGAGG : 267390 vulgar: CbirOr5 26 276 . KQ414889.1 266637 267390 + 258 M 17 51 G 2 0 M 148 444 G 0 6 M 58 174 G 0 3 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266638 267390 258 + . gene_id 13 ; sequence CbirOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266638 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266638 267390 . + . insertions 9 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 266638 267390 258 + . alignment_id 13 ; Query CbirOr5 ; Align 266638 27 51 ; Align 266689 46 444 ; Align 267139 194 174 ; Align 267316 252 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 239 Query range: 22 -> 276 Target range: 204224 -> 204980 23 : SerAspPheArgTyrAlaValGlnIleSerValTyrLeuLeuLysProIleGlyAlaT : 42 ..!|||.!.|||||||||..!!::.!! ! ! :!!||| ! !:!!||||||| GluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaT 204225 : GAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGT : 204282 43 : rpProLeuAspAspAspGluAlaThrSerTrpLeuLysIleAlaValHisLysValSe : 61 |||||:!! ! :!! :!!||| !!!!! !! !|||!..::!:!!.. rpProIleProValAsn------SerSerProPheThrArgLeuValArgArgIleGl 204283 : GGCCGATTCCAGTGAAC------TCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGA : 204333 62 : rThrLeuIleAlaThrPheLeuMetLeuPheThrIleValProTrpIleValGlnIle : 80 ! !:!!:!!.!! ||||||......... !||||||||| ! :!!:!! ! :!: uHisValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrVal 204334 : ACACGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTG : 204390 81 : IleLysGluLysTrpSerValIleGlnMetLeuArgThrIleCysProLeuLeuPheT : 100 .!! !:!!:!! !!:!! !! ! |||!:!! !:!! ! |||:!!:!! ! PheLeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnC 204391 : TTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACT : 204450 101 : hrLeuThrValPheAlaArgTyrIleLeuLeuMetLeuHisGlnAsnGlnLeuLysSe : 119 ! !! ! !||| !!:!||| !:!!:!!:!:! !!.. :!!:!!:!!:!!!. ysSerIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLy 204451 : GCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAA : 204507 120 : rCysMetAspArgValAlaAspAspTrpArgTyrThrIleIleAlaGluAspArgGlu : 138 ! !!:!!:!!! !:!! ! !|||||| ! !! ! !|||:!!||| ! sSerLeuAsnThrIleArgArgAspTrp---IleGluAlaThrAspGluAsnArgLeu 204508 : GAGTTTGAACACCATCAGACGCGACTGG---ATAGAGGCTACGGATGAAAATCGGTTG : 204561 139 : ThrMetLeuAlaAsnAlaArgMetGlyArgThrPheGlyIleValSerValValPheM : 158 ! !.!.! !:!!!!.|||!:!!!:||||||! ! ! !:!::!!:!!!.!!.! !| IlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrM 204562 : ATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTA : 204621 159 : etPheSerSerGlyAlaLeuPhePheSer<->LeuProLeuValLeuProSerLeuIl : 176 ||!:!.!!.!!||| !! !!:! !!! |||||||||:!! ! !!!!:!!:! etTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleVa 204622 : TGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGT : 204678 177 : eAsnGluAspAsnValThrValArgLeuHisProSerProCysGluLeuLeuValPhe : 195 !!.. ||||||||||||:!!|||! ! |||!!!||| ! ...::: ||| lThrProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePhe 204679 : AACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttcttt : 204735 196 : AspSerLysIleThrProValTyrGluIleValTyrLeuLeuGlnThrLeuSerGlyC : 215 :::..!:!! !:!!||| !||||||||||||!:!:!!||||||! !:!!:!!|||! AsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyP 204736 : aacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTT : 204795 216 : ysThrIleTyrSerAlaPheCysGlyIleCysSerLeuMetAlaAsnPheValValHi : 234 !..!! !|||:!!!.!.!! !!|||! !|||.!!:!! ||| ||||||:!!|| heValThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHi 204796 : TTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCA : 204852 235 : sValCysGlyGlnCysAspValLeuThrLeuIlePheAspGluThrValAspGlyGly : 253 |!.!|||.!!..! :!!|||..! !! .!.:!!! ! !|||||| !!.! sAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAla 204853 : CGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCG : 204909 254 : GluHisAsnArgGlyProIleGluGlyArgIleAlaThrAlaValThrArgHisLeuA : 273 !!: !.!..! !! !:!:.!. !!!:!|||||| ! !||| ! !!!. !! AspMetThrGluThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrL 204910 : GACATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGA : 204969 274 : rgMetLeuArg : 276 :!!!: !||| ysIleLysArg 204970 : AGATAAAGAGG : 204980 vulgar: CbirOr5 22 276 . KQ414889.1 204224 204980 + 239 M 25 75 G 2 0 M 79 237 G 1 0 M 38 114 G 0 3 M 109 327 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204225 204980 239 + . gene_id 14 ; sequence CbirOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204225 204980 . + . KQ414889.1 exonerate:protein2genome:local exon 204225 204980 . + . insertions 3 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 204225 204980 239 + . alignment_id 14 ; Query CbirOr5 ; Align 204225 23 75 ; Align 204300 50 237 ; Align 204537 130 114 ; Align 204654 168 327 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 219 Query range: 16 -> 276 Target range: 289705 -> 290482 17 : GluAsnGluGlnHisValSerAspPheArgTyrAlaValGlnIleSerValTyrLeuL : 36 ..!|||!!:!:::!!! !!!!|||.!.||||||.!! !!:!!:!!!!! !!:::!!| SerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleL 289706 : TCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCT : 289763 37 : euLysProIleGlyAlaTrpProLeuAspAspAspGluAlaThrSerTrpLeuLysIl : 55 |||||||||||||| !!::|||!!!! ! !..!...|||!:!!!! ! !::!! euLysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgTh 289764 : TGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAAC : 289820 56 : eAlaValHisLysValSerThrLeuIleAlaThrPheLeuMetLeuPheThrIleVal : 74 ||| !:!! !! !|||:!!..! !! :!!:!:! !|||! !|||||| rAla---SerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleVal 289821 : GGCG---TCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTA : 289874 75 : ProTrpIleValGlnIleIleLysGluLysTrpSerValIleGlnMetLeuArgThrI : 94 |||!::! ! !!!.:!!:!! ... ! ..!:!!! ! !.!.:!!!:!!.!: ProPheSerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnL 289875 : CCGTTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATC : 289934 95 : leCysProLeuLeuPheThrLeuThrValPheAlaArgTyrIleLeuLeuMetLeuHi : 113 !! ! |||||| !||| !||||||..!||| !!:!||| !! !!!!! :!! ! euGlyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLy 289935 : TCGGACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAA : 289991 114 : sGlnAsnGlnLeuLysSerCysMetAspArgValAlaAspAspTrpArgTyrThrIle : 132 ::: !:!! !!|||:!! ! !.!:!!! ! ||||||!:! ! ! sGlySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArg 289992 : AGGTTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGT : 290048 133 : IleAlaGluAspArgGluThrMetLeuAlaAsnAlaArgMetGlyArgThrPheGlyI : 152 !! !!!: !!|||! ! !|||||| ! !!!.!! !|||.!!|||!.!.!! !! AspGluAspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleL 290049 : GACGAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAA : 290108 153 : leValSerValValPheMetPheSerSerGlyAlaLeuPhePheSerLeuProLeuVa : 171 !:!!!!!!.!:!!|||:!!!:!! !.!!||| !! !!:! !!!!:!! !! !:! ysLeuCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLe 290109 : AACTGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTT : 290165 172 : lLeuProSerLeuIleAsnGluAspAsnValThrValArgLeuHisProSerProCys : 190 !!!! !!!.! !! ! .!.! !|||||||||:!!|||! !! !!! !||| !! uPheSerLysLysSerValAsnGlyAsnValThrIleArgProLeuThrTyrProGly 290166 : GTTCTCGAAGAAGAGCGTGAACGGTAACGTGACTATCAGACCTCTAACTTATCCCGGT : 290222 191 : GluLeuLeuValPheAspSerLysIleThrProValTyrGluIleValTyrLeuLeuG : 210 ! ! ! !!|||||| !:!!! !:!|||!.!||||||||||||!:!! !:!!! TyrGluGluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetH 290223 : TACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGC : 290282 211 : lnThrLeuSerGlyCysThrIleTyrSerAlaPheCysGlyIleCysSerLeuMetAl : 229 !. !:!!! !! ! ! !! !:! ! !.! ! !||||||! !.! isCysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrTh 290283 : ACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGAC : 290339 230 : aAsnPheValValHisValCysGlyGlnCysAspValLeuThrLeuIlePheAspGlu : 248 !! !|||!.!..!|||..!||||||||| ! ! :!!! !||| ! .!.!!:!!: rIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAsp 290340 : GATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGAT : 290396 249 : ThrValAspGlyGlyGluHisAsnArgGlyProIleGluGlyArgIleAlaThrAlaV : 268 !..! ! !!||| !! ..! ! !:!:...! !|||:!:|||..!!.!| LeuThrLysArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValValV 290397 : CTGACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTG : 290456 269 : alThrArgHisLeuArgMetLeuArg : 276 ||!:! !!|||:!!..!!!:|||!:! alSerGlyHisValGluIleLeuLys 290457 : TGAGCGGTCACGTGGAGATCTTGAAG : 290482 vulgar: CbirOr5 16 276 . KQ414889.1 289705 290482 + 219 M 40 120 G 1 0 M 219 657 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289706 290482 219 + . gene_id 15 ; sequence CbirOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289706 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289706 290482 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 289706 290482 219 + . alignment_id 15 ; Query CbirOr5 ; Align 289706 17 120 ; Align 289826 58 657 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 195 Query range: 286 -> 400 Target range: 301617 -> 302036 287 : GluIleCysLeuValGluPheIleGlnAlaSerCysAsnIleCysLeuIleGlyTyrT : 306 .!.:!!||| ||| ...::::::!!!! ||| ! !!!:!! !! HisLeuCysAlaValIleLysPheGluSerThrLeuAsnAlaLysPheLeuArgValI 301618 : CATCTCTGCgctgtaattaaatttgaatctACTTTAAATGCAAAGTTTTTACGAGTAA : 301675 307 : yrIleIleThrAspLeuAsnAsnAsnGluSerPheValGlnIleSerMetTyrValLe : 325 ! !.!! !!!:! !.!.|||!:!!!:!!!.!!!.!..!:!:!!!.!.!:!..!|| le***Phe***GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLe 301676 : TTTGATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCT : 301732 326 : uAlaLeuAlaSerIleValPheAsnValPheMetPheCysTyrIleGlyAspLeuLeu : 344 | |||.!!|||.!!..!||||||:!!|||!!:|||||||||||||||!!::!!||| u---LeuThrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeu 301733 : G---TTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTT : 301786 345 : AlaGluArg >>>> Target Intron 1 >>>> CysGlnLysLeuGlyThrTh : 354 :!!|||!:! 80 bp |||...:!!:!!|||:!!.! SerGluGln++ ++CysSerGlnIleGlySerAl 301787 : TCCGAACAGgt.........................agTGTAGCCAAATTGGTTCAGC : 301896 355 : rCysTyrThrValGluTrpTyrArgMetProProArgLysAlaValGluMetIleMet : 373 !! ||| !:!!!!:||||||!.!:!:||| !!!:!!:!||| !!!::!:|||:!: aSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeu 301897 : ATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTA : 301953 374 : ProIleThrIleSerArgTyrProAlaThrLeuThrAlaGlyLysMetMetThrMetT : 393 ! !! !..!||||||!:!|||||| !!! !|||||||||||||||!!:!!: !:!:: LeuSerValIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuS 301954 : CTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTAT : 302013 394 : hrLeuThrThrPheSerAspIle : 400 !!|||!.!|||||||||..!:!! erLeuAsnThrPheSerSerVal 302014 : CCTTGAATACATTCAGCTCTGTA : 302036 vulgar: CbirOr5 286 400 . KQ414889.1 301617 302036 + 195 M 39 117 G 1 0 M 21 63 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301618 302036 195 + . gene_id 16 ; sequence CbirOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301618 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301618 301797 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301618 302036 195 + . alignment_id 16 ; Query CbirOr5 ; Align 301618 287 117 ; Align 301735 327 63 ; Align 301878 348 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 181 Query range: 322 -> 403 Target range: 210699 -> 211941 323 : TyrValLeuAlaLeuAlaSerIleValPheAsnValPheMetPheCysTyrIleGlyA : 342 |||:!!:!! !|||.!!|||:!!..!||||||:!!|||!!:|||||||||||||||! TyrIleValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyG 210700 : TACATAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTG : 210757 343 : spLeuLeuAlaGluArg >>>> Target Intron 1 >>>> CysGlnLysLeu : 351 !::!!|||||||||!:: 999 bp !|||:!! luValLeuAlaGluGln++ ++ThrValLysVal 210758 : AAGTGTTGGCTGAACAggt.........................agACAGTAAAAGTT : 211783 352 : GlyThrThrCysTyrThrValGluTrpTyrArgMetProProArgLysAlaValGluM : 371 ||| !! !! !|||! !:!!!!:||||||||||||||| !!:!|||!.!:!!! : GlyGluLysSerTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValV 211784 : GGAGAAAAGTCTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCG : 211843 372 : etIleMetProIleThrIleSerArgTyrProAlaThrLeuThrAlaGlyLysMetMe : 390 !: !:!! !|||:!!!!:|||!.!! !!.!!! !:!!|||||||||!!.:!:!! alProLeuMetIleSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIl 211844 : TACCCTTGATGATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCAT : 211900 391 : tThrMetThrLeuThrThrPheSerAspIleLeuLysThr : 403 :..!:!::!!:!!!:!!:!|||.!!|||:!! ||| eValLeuSerIleSerSerPheGlyAspValSerValThr 211901 : CGTTCTTTCAATCAGTAGTTTCGGTGACGTAAGtgttaca : 211941 vulgar: CbirOr5 322 403 . KQ414889.1 210699 211941 + 181 M 25 75 5 0 2 I 0 995 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210700 211941 181 + . gene_id 17 ; sequence CbirOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 210700 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210700 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211941 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211941 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210700 211941 181 + . alignment_id 17 ; Query CbirOr5 ; Align 210700 323 75 ; Align 211774 348 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 350 -> 413 Target range: 206251 -> 207601 351 : LeuGlyThrThrCysTyrThrValGluTrpTyrArgMetProProArgLysAlaValG : 370 :!!||| !|||! !! !||||||.!.|||||||||:!:||| !||| ! ||| !. ValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgS 206252 : GTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCT : 206309 371 : luMetIleMetProIleThrIleSerArgTyrProAlaThrLeuThrAlaGlyLysMe : 389 ..||||||:!! !|||.!!!!:|||!.!|||||| !! !||||||||||||||||| erMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMe 206310 : CTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAAT : 206366 390 : tMetThrMetThrLeuThrThrPheSerAsp >>>> Target Intron 1 >>>> : 400 |.!. !|||:!!|||.!!!:!|||!!!||| 1161 bp tPheGluMetSerLeuAlaSerPheThrAsp++ 206367 : GTTCGAAATGTCTTTAGCTAGTTTCACCGATgt......................... : 206401 401 : IleLeuLysThrSerMetAlaTyrPheAsnLeuLeuArgGlu : 413 :!!:!!|||..!:!!|||!.!|||||||||:!!||||||||| ++ValMetLysValAlaMetGlyTyrPheAsnIleLeuArgGlu 206402 : agGTAATGAAGGTGGCGATGGGATACTTCAACATACTCCGTGAA : 207601 vulgar: CbirOr5 350 413 . KQ414889.1 206251 207601 + 172 M 49 147 5 0 2 I 0 1157 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206252 207601 172 + . gene_id 18 ; sequence CbirOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206252 206398 . + . KQ414889.1 exonerate:protein2genome:local exon 206252 206398 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206399 206400 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206399 207559 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 207558 207559 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 207560 207601 . + . KQ414889.1 exonerate:protein2genome:local exon 207560 207601 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206252 207601 172 + . alignment_id 18 ; Query CbirOr5 ; Align 206252 351 147 ; Align 207560 400 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 34 -> 206 Target range: 294711 -> 295227 35 : LeuLeuLysProIleGlyAlaTrpProLeuAspAspAspGluAlaThrSerTrpLeuL : 54 |||||||||||||||||| !||||||||| ! !!..!.!. |||||| |||! LeuLeuLysProIleGlyLeuTrpProLeuIleTyrSerHis---ThrSerLysLeuA 294712 : CTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACAGTCAC---ACCAGCAAACTGA : 294766 55 : ysIleAlaValHisLysValSerThrLeuIleAlaThrPheLeuMetLeuPheThrIl : 73 !.! !!.!:!! ! !:!! !! ! ! ..!|||!!. !:!:||||||..!:! snLysValLeuSerIleIleLeuIleAlaTrpCysThrLeuThrValLeuPheValLe 294767 : ACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTT : 294823 74 : eValProTrpIleValGlnIleIleLysGluLysTrpSerValIleGlnMetLeuArg : 92 !||||||!! ! ! !:!! .!. :::||| !:!!!:! uValProCysGlyTyrPheCysValPheHisValLysAsnValLysLeuLysMetLys 294824 : AGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaacgtgaaattgaaGATGAAA : 294880 93 : ThrIleCysProLeuLeuPheThrLeuThrValPheAlaArgTyrIleLeuLeuMetL : 112 !:!: !!|||:!!|||!:!:!!:!! ! !.!. !||||||! !! !|||:!:| LeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuArgTyrSerCysLeuValL 294881 : CTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTT : 294940 113 : euHisGlnAsnGlnLeuLysSerCysMetAspArgValAlaAspAspTrpArgTyrTh : 131 || ! ! ! !!!!||| !|||!!:!!: !:!!! !:!!||||||!:!! ! euLysThrProAlaPheLysHisCysIleGluAspIleGluAsnAspTrpLysLeuIl 294941 : TGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGAGAACGATTGGAAGTTGAT : 294997 132 : rIleIleAlaGluAspArgGluThrMetLeuAlaAsnAlaArgMetGlyArgThrPhe : 150 ! !! ! !!||| !!|||! !! !|||:!! !||||||! !:!: !!:!! !.!. eAspAsnProGluHisArgAlaIleMetIleLysAsnAlaMetValThrGlnArgMet 294998 : CGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCGATGGTCACGCAGAGGATG : 295054 151 : GlyIleValSerValValPheMetPheSerSerGlyAlaLeuPhePheSerLeu<->P : 169 !:!!!.!! !..!:!!.!.!!:!:!||||||!.!!.!! !!:! !:!!:!! | ThrValAlaPheThrIleIleIleTyrSerSerAlaValSerTyrHisAlaIleValP 295055 : ACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgc : 295114 170 : roLeuValLeuProSerLeuIleAsnGluAspAsnValThrValArgLeuHisProSe : 188 ||... :::||| |||:!! ! ||| !|||:!!||| ! |||! roPhePheSerAsnAlaLeuGluAsnLysLysAsnAsnThrIleArgAlaLeuProIl 295115 : catttttttcaaacgctTTGGAGAACAAGAAGAATAATACGATTCGTGCGTTACCAAT : 295171 189 : rProCysGluLeuLeuValPheAspSerLysIleThrProValTyrGluIleVal : 206 !||| !! ! !||| !! ! |||:!! ! !!:!|||..!|||||||||:!! eProGlyTyrGluLeuPheValAspAlaTyrSerSerProThrTyrGluIleIle 295172 : TCCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: CbirOr5 34 206 . KQ414889.1 294711 295227 + 172 M 14 42 G 1 0 M 119 357 G 0 3 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294712 295227 172 + . gene_id 19 ; sequence CbirOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294712 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294712 295227 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294712 295227 172 + . alignment_id 19 ; Query CbirOr5 ; Align 294712 35 42 ; Align 294754 50 357 ; Align 295114 169 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 344 -> 422 Target range: 234979 -> 235284 345 : AlaGluArgCysGlnLysLeuGlyThrThrCysTyrThrValGluTrpTyrArgMetP : 364 .!!:!!!:!||| |||:!!||| !! ! |||! !..!||||||||||||:!:| ThrGlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuP 234980 : ACTCAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTAC : 235037 365 : roProArgLysAlaValGluMetIleMetProIleThrIleSerArgTyrProAlaTh : 383 ||! !!:!! |||:!!! :!!:!!||| !|||:!!! |||!!! ! !! roHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLy 235038 : CTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAA : 235094 384 : rLeuThrAlaGlyLysMetMetThrMetThrLeuThrThrPheSerAsp >>>> Ta : 400 !:!!||||||||||||.!.:!: !|||:!!:!!.!!||||||.!!||| sIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAsp++ 235095 : AATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATgt....... : 235147 401 : rget Intron 1 >>>> IleLeuLysThrSerMetAlaTyrPheAsnLeuLeuAr : 412 71 bp :!!!!!|||.!!|||.!.||||||||||||:!!:!!|| ++ValPheLysAlaSerPheAlaTyrPheAsnMetIleAr 235148 : ..................agGTATTTAAGGCGTCTTTCGCCTACTTCAACATGATCCG : 235252 413 : gGluPheSerIleArgAspAlaThrArgThr : 422 | ! !!:!!!!: !! ! .!!|||!.!||| gThrValAlaMet***LysThrThrHisThr 235253 : CACAGTTGCAATGTGAAAAACTACGCATACT : 235284 vulgar: CbirOr5 344 422 . KQ414889.1 234979 235284 + 157 M 55 165 5 0 2 I 0 67 3 0 2 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234980 235284 157 + . gene_id 20 ; sequence CbirOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234980 235144 . + . KQ414889.1 exonerate:protein2genome:local exon 234980 235144 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 235145 235146 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 235145 235215 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 235214 235215 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 235216 235284 . + . KQ414889.1 exonerate:protein2genome:local exon 235216 235284 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234980 235284 157 + . alignment_id 20 ; Query CbirOr5 ; Align 234980 345 165 ; Align 235216 400 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 322 -> 400 Target range: 224359 -> 224658 323 : TyrValLeuAlaLeuAlaSerIleValPheAsnValPheMetPheCysTyrIleGlyA : 342 ||| !!:!! !||| !|||:::...||||||:::|||:::|||||||||||||||! TyrPheIleLeuLeuMetSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyG 224360 : TACTTCATACTACTCATGTCtcttactttcaatatttttatattttgttacatAGGAG : 224417 343 : spLeuLeuAlaGluArgCysGln{L} >>>> Target Intron 1 >>>> {ys : 350 !:|||:!!||||||::: :::{|} 65 bp {|| luLeuValAlaGluGlnValLys{L}-+ +-{ys 224418 : AGCTGGTAGCTGAAcaggtgaaa{a}at.........................aa{aa : 224507 351 : }LeuGlyThrThrCysTyrThrValGluTrpTyrArgMetProProArgLysAlaVal : 369 }:::||| !..!! |||! !:!!!!:|||||||||:!! !! !!.!||| !:!! }IleGlyGlnValSerTyrMetIleAspTrpTyrArgLeuThrGlyAsnLysLysLeu 224508 : }attggacaAGTGTCGTACATGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTA : 224563 370 : GluMetIleMetProIleThrIleSerArgTyrProAlaThrLeuThrAlaGlyLysM : 389 |||:!! !|||.!!!!:|||!.!! ! !! !! !||||||||||||!!.| CysCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnM 224564 : TGCTGCATTCTGATAATCGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACA : 224623 390 : etMetThrMetThrLeuThrThrPheSerAspIle : 400 ||:!: !:!! !||||||||||||.!!|||:!! etValGluLeuCysLeuThrThrPheGlyAspVal 224624 : TGGTCGAACTGTGTCTAACCACTTTCGGTGACGTA : 224658 vulgar: CbirOr5 322 400 . KQ414889.1 224359 224658 + 142 M 27 81 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224360 224658 142 + . gene_id 21 ; sequence CbirOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224360 224441 . + . KQ414889.1 exonerate:protein2genome:local exon 224360 224441 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224442 224443 . + . intron_id 1 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local intron 224442 224506 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224505 224506 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 224507 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224507 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224360 224658 142 + . alignment_id 21 ; Query CbirOr5 ; Align 224360 323 81 ; Align 224509 351 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 347 -> 410 Target range: 280276 -> 280465 348 : CysGlnLysLeuGlyThrThrCysTyrThrValGluTrpTyrArgMetProProArgL : 367 ||| !|||:!!|||..!:!! !|||! !:!!!!:|||||||||:!!||| !!:!| CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysL 280277 : TGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGA : 280334 368 : ysAlaValGluMetIleMetProIleThrIleSerArgTyrProAlaThrLeuThrAl : 386 ||||| !! :!!|||:!! !.!!.!!:!:|||!.!! ! !! !! !|||||||| ysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 280335 : AAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 280391 387 : aGlyLysMetMetThrMetThrLeuThrThrPheSerAspIleLeuLysThrSerMet : 405 |||||||!!:!!: !:!::!!|||!:!!:!|||!!!..!:!: !! ! !!:!:!: aGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeu 280392 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTA : 280448 406 : AlaTyrPheAsnLeu : 410 :!!|||!:!:!!||| SerTyrTyrHisLeu 280449 : TCCTATTATCATTTG : 280465 vulgar: CbirOr5 347 410 . KQ414889.1 280276 280465 + 129 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280277 280465 129 + . gene_id 22 ; sequence CbirOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280277 280465 129 + . alignment_id 22 ; Query CbirOr5 ; Align 280277 348 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 347 -> 414 Target range: 287063 -> 287264 348 : CysGlnLysLeuGlyThrThrCysTyrThrValGluTrpTyrArgMetProProArgL : 367 ||| !|||:!!||| !:!! !|||! !:!!!!:|||||||||:!!||| !!:!! CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysT 287064 : tGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAA : 287121 368 : ysAlaValGluMetIleMetProIleThrIleSerArgTyrProAlaThrLeuThrAl : 386 !||| !! :!!|||:!! !.!!.!!:!:|||!.!! ! !! !! !|||||||| hrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 287122 : CAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 287178 387 : aGlyLysMetMetThrMetThrLeuThrThrPheSerAspIleLeuLysThrSerMet : 405 |||||||!!:!!: !:!::!!|||!:!!:!|||!!!..!:!: !! ! !!:!:!: aGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeu 287179 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTA : 287235 406 : AlaTyrPheAsnLeuLeuArgGluPhe : 414 :!!|||!:!:!!|||! ...||| SerTyrTyrHisLeuTyrAspAsnPhe 287236 : TCCTATTATCATTTGTacgataatttt : 287264 vulgar: CbirOr5 347 414 . KQ414889.1 287063 287264 + 125 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287064 287264 125 + . gene_id 23 ; sequence CbirOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287064 287264 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287264 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287064 287264 125 + . alignment_id 23 ; Query CbirOr5 ; Align 287064 348 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 348 -> 405 Target range: 292395 -> 292566 349 : GlnLysLeuGlyThrThrCysTyrThrValGluTrpTyrArgMetProProArgLysA : 368 ...:!!:!!!.! !.!!! !||| !..!|||||||||!.!:!!||| !||||||| SerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgArgLysA 292396 : AGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGG : 292453 369 : laValGluMetIleMetProIleThrIleSerArgTyrProAlaThrLeuThrAlaGl : 387 || !!!:!!::!!:!! !:!!.!!|||!!!!:!:!!||| !! !||||||||||| laArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuThrAlaGl 292454 : CTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGG : 292510 388 : yLysMetMetThrMetThrLeuThrThrPheSerAspIleLeuLysThrSerMet : 405 ||||!!:.!...!:!::!!|||!.!||||||.!!! !:!!! !:!!:!!!.!:!: yLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSerLysLeu 292511 : CAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCAAAACTA : 292566 vulgar: CbirOr5 348 405 . KQ414889.1 292395 292566 + 115 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292396 292566 115 + . gene_id 24 ; sequence CbirOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292396 292566 . + . KQ414889.1 exonerate:protein2genome:local exon 292396 292566 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292396 292566 115 + . alignment_id 24 ; Query CbirOr5 ; Align 292396 349 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 6 -> 127 Target range: 299629 -> 299989 7 : ArgSerAlaSerAlaThrAspValThrLysGluAsnGluGlnHisValSerAspPheA : 26 ||||||..!|||::!..!|||! ! ! !..!||| ! !!.:!! !!:!|||.!.! ArgSerCysSerSerValAspGlyGlnLeuArgAsnTyrHisTyrGlnAsnAspIleH 299630 : CGATCCTGTAGCAGTGTTGACGGCCAATTGAGGAATTACCATTACCAAAATGACATAC : 299687 27 : rgTyrAlaValGlnIleSerValTyrLeuLeuLysProIleGlyAlaTrpProLeuAs : 45 .!|||.!!:!!|||!!:!!! !!::||||||||||||||||||!.!|||! !||| isTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpArgLeu-- 299688 : ATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGCGATTG-- : 299744 46 : pAspAspGluAlaThrSerTrpLeuLysIleAlaValHisLysValSerThrLeuIle : 64 |||:!! !:!!||| !|||:!! ! !||| ! ||| !! ! !||| -LeuAspGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMetThrIle 299745 : -CTAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATGACAATA : 299798 65 : AlaThrPheLeuMetLeuPheThrIleValProTrpIleValGlnIleIleLysGluL : 84 ..! !! ! !:!!!!!|||! !:!!:!!|||! ! ! ! |||.!! ! !: CysPheSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePhePheAlaG 299799 : TGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCTTCGCGG : 299858 85 : ysTrpSerValIleGlnMetLeuArgThrIleCysProLeuLeuPheThrLeuThrVa : 103 !! |||:!! ! ! !:!!!:!..!.!! !!|||:!! !||| !|||:!! luLysSerIleHisValLysValLysValPheGlyProValGlyPheCysLeuSerSe 299859 : AGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCTCCTC : 299915 104 : lPheAlaArgTyrIleLeuLeuMetLeuHisGlnAsnGlnLeuLysSerCysMetAsp : 122 !.!!!.!!:!||| !! !||| |||:!! ..! !!!!:!! !!|||!!:.!. rIleValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCysIleGln 299916 : CATCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGCATCCAA : 299972 123 : ArgValAlaAspAsp : 127 !.!|||! ! ||| HisValGluArgAsp 299973 : CACGTCGAGAGAGAC : 299989 vulgar: CbirOr5 6 127 . KQ414889.1 299629 299989 + 114 M 38 114 G 1 0 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299630 299989 114 + . gene_id 25 ; sequence CbirOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299630 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299630 299989 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 299630 299989 114 + . alignment_id 25 ; Query CbirOr5 ; Align 299630 7 114 ; Align 299744 46 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 978 Query range: 17 -> 394 Target range: 232447 -> 235147 18 : GlnAspSerGluTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaT : 37 !:!|||! !|||||||||||||||:!!|||||||||||||||! !|||!!:||||||| ArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaT 232448 : CGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCAT : 232505 38 : rpProArgAlaGlyAlaSerIleSerIleMetAsnLysLeuLeuSerArgGlyIleGl : 56 ||||||||!.! .!!..!! !|||! ! .!.:!!||||||:!!!:! !:!::: rpProArgVal---ThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuAr 232506 : GGCCGCGTGTT---ACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAG : 232559 57 : nPheThrCysHisSerLeuIleAlaSerThrValIleProCysIleLeuTyrIleLeu : 75 !.!!|||||||||||||||!!: !|||:!!:!!:!!||||||||||||!:!|||||| gLeuThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeu 232560 : ACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTG : 232616 76 : PheGlu<->ProAspValTyrLeuLysLeuLysAlaPheGlyProMetIleHisTrpL : 94 |||||| !!..!:!! ! !!:!:!!|||:!!.!!|||||||||! !|||!::| PheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheL 232617 : TTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTC : 232676 95 : euMetGlyGlyAlaAsnTyrCysSerLeuLeuSerSerSerHisLysIleArgLysCy : 113 ||||||||! ! !|||||||||!!!||||||:!!!.!:!!:!! ! |||! ! ! || euMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCy 232677 : TGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTG : 232733 114 : sValAspHisMetArgThrAspTrpGlnMetValGluArgMetSerAspArgGluVal : 132 ||||!!:!!.:!!!:! !||||||!:!! |||:!!!:! ! !!|||!!::!! sValGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeu 232734 : CGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTG : 232790 133 : MetLeuArgAsnAlaArgPheGlyArgPheValSerThrPheCysAlaValPheMetG : 152 ||||||!:!||||||!:!.!!||||||! :!!:!! !.!!..!||| !!! !|||! MetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetH 232791 : ATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGC : 232850 153 : lnGlyGlyValCysSerTyrSerValIleThrValLeuThrProValIleMetGlnIl : 171 !. !|||||| !!||| !!..!:!!:!!|||! !||| ! ! !! .!. ! :! isThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrVa 232851 : ACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGT : 232907 172 : eGlyAsnIleThrIleThrMetArgGlnLeuProCysProPheTyrThrAspLeuVal : 190 :|||||| !:! !:!!||| !! !||||||||| !!||||||||| ! |||:!! lGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMet 232908 : GGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATG : 232964 191 : AspValArgTyrSerProAlaAsnGluIleValLeuGlyLeuGlnLeuMetSerThrV : 210 |||..!|||!:!||||||.!!|||||||||:!!!!!! !||||||! !:!:||| ! AspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyP 232965 : GACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGT : 233024 211 : alIleValAsnSerValThrValGlyAlaCysSerLeuAlaAlaValPheAlaMetHi : 229 !!||||||||||||||||||||||||||||||.!!|||!.!||||||.!.|||||||| heIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHi 233025 : TCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCA : 233081 230 : sAlaCysGlyGlnLeuAsnIleLeuMetIleLysLeuAspGluLeuValAspGlyThr : 248 |||||||||||||||||||:!::!!||| |||||||||!!:|||||||||!.!! ! sAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLys 233082 : CGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAA : 233138 249 : GluGlyGluPheLysThrAsnHisArgLysLeuAlaValIleValGluHisHisLeuA : 268 ! ! !||| !:!..! !!.|||||||||!.! !!||||||||||||||||||| GlyGlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuA 233139 : GGGCAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGC : 233198 269 : rgValLeu{Se} >>>> Target Intron 1 >>>> {r}PheValSerGlnIl : 276 ||..!|||{||} 1315 bp {|}|||:!! !!.!.|| rgThrLeu{Se}++ ++{r}PheIleArgAsnIl 233199 : GTACATTA{AG}gt.........................ag{T}TTTATACGGAATAT : 234537 277 : eGluAlaIleMetHisHisIleCysLeuIleGluLeuLeuGlyCysThrIleAspIle : 295 |||| !:!!|||:!!! |||||||||:!!||||||:!!|||||||||:!::!!!!: eGluAsnValMetAsnLeuIleCysLeuValGluLeuValGlyCysThrLeuAsnMet 234538 : AGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACGTTGAACATG : 234594 296 : CysMetLeuGlyTyrTyrThrIleMet >>>> Target Intron 2 >>>> Gl : 305 |||||||||! !|||||| !:!!! ! 189 bp || CysMetLeuGluTyrTyrLeuLeuThr++ ++Gl 234595 : TGCATGCTCGAGTATTATTTACTCACGgt.........................agGA : 234813 306 : uTrpGluLeuHisAspThrLysAsnLeuLeuThrTyrPheThrIlePheIleSerMet : 324 | ! ... :::...||| !:!!||| !!! !:!:!:!:!:|||||| u---------LysSerLysGluLysLeuAlaSerTyrValIleValTyrValSerMet 234814 : A---------AAgtcgaaggaaaaattagCTTCATACGTCATCGTGTACGTGTCCATG : 234861 325 : SerCysAsnIlePheIlePheCysTyrIleAlaGluIleLeuThrAspGln >>>> : 342 !!!! ||||||||||||||||||||||||!.!|||! ||||||!!:||| ThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGln++ 234862 : ACATTtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGCAGgt..... : 234917 343 : Target Intron 3 >>>> CysGlnLysValGlyGluMetValTyrMetThrGlu : 353 74 bp ||| ||||||||||||! ||||||||||||||| ++CysThrLysValGlyGluLysValTyrMetThrGlu 234918 : ....................agTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAA : 235022 354 : TrpTyrArgLeuHisHisLysThrAlaHisAspLeuIleLeuIleIleSerArgSerA : 373 ||||||||||||! !||||||||||||! !! !|||:!!:!!|||||||||||||||! TrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerS 235023 : TGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGA : 235082 374 : snThrValIleLysIleThrAlaGlyLysMetIleGlnLeuSerIleAlaThrPheGl : 392 :!! !||||||||||||||||||||||||.!.:!!|||:!!|||:!!||||||||||| erMetValIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGl 235083 : GCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGG : 235139 393 : yAspVal : 394 ||||||| yAspVal 235140 : CGATGTG : 235147 vulgar: CbirOr16 17 394 . KQ414889.1 232447 235147 + 978 M 23 69 G 1 0 M 36 108 G 0 3 M 193 579 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 33 99 5 0 2 I 0 185 3 0 2 M 1 3 G 3 0 M 33 99 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232448 235147 978 + . gene_id 1 ; sequence CbirOr16 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232448 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232448 233208 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232448 235147 978 + . alignment_id 1 ; Query CbirOr16 ; Align 232448 18 69 ; Align 232517 42 108 ; Align 232628 78 579 ; Align 234525 272 99 ; Align 234813 305 3 ; Align 234816 309 99 ; Align 234989 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 911 Query range: 19 -> 406 Target range: 259766 -> 262192 20 : SerGluTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProA : 39 |||!!:||||||:!!|||!!!|||||||||||||||||||||||||||||||||||| SerAspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpPro- 259767 : AGTGACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCA- : 259824 40 : rgAlaGlyAlaSerIleSerIleMetAsnLysLeuLeuSerArgGlyIleGlnPheTh : 58 !!..!:!!|||! !!!! !:!:.!.|||:!!:!!||| ! !:!: |||! --ProSerSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIl 259825 : --CCTTCATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTAT : 259878 59 : rCysHisSerLeuIleAlaSerThrValIleProCysIleLeuTyrIleLeuPheGlu : 77 !|||:!!||| !||| ! !|||:!!|||||||||:!!|||:!!!!:|||.!!||| eCysTyrSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGlu 259879 : CTGCTACAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAG : 259935 78 : ProAsp<->ValTyrLeuLysLeuLysAlaPheGlyProMetIleHisTrpLeuMetG : 96 !!!: :!!|||:!!||| !|||!.!.!!||||||:!:! !||||||!!!:!:| LysGluSerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValG 259936 : AAGGAGAGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCG : 259995 97 : lyGlyAlaAsnTyrCysSerLeuLeuSerSerSerHisLysIleArgLysCysValAs : 115 || !! !|||||| !!!||||||! !!!!.!!... ! |||! !!..||||||!! lyCysIleAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGl 259996 : GCTGTATTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGA : 260052 116 : pHisMetArgThrAspTrpGlnMetValGluArgMetSerAspArgGluValMetLeu : 134 :|||:!!..!!.!||||||::!!!::!! !||| !!.!|||!:!.!.||||||||| uHisValGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeu 260053 : ACACGTGGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTG : 260109 135 : ArgAsnAlaArgPheGlyArgPheValSerThrPheCysAlaValPheMetGlnGlyG : 154 ||| !!|||!:!|||||||||!:!|||:!!.!!! !||||||!.!|||:!!||||||| ArgTyrAlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyG 260110 : AGATACGCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCG : 260169 155 : lyValCysSerTyrSerValIleThrValLeuThrProValIleMetGlnIleGlyAs : 173 ||||| !!!!:!!!!:!!:!!|||||||||!:! !!! !:!:!!:|||:!:||||| lyValLeuCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAs 260170 : GAGTTCTGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAA : 260226 174 : nIleThrIleThrMetArgGlnLeuProCysProPheTyrThrAspLeuValAspVal : 192 | |||! ! !:!:!.!! !||||||||| !! ! |||! !!!:|||:!!:!!||| nGluThrArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnVal 260227 : CGAGACGAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTG : 260283 193 : ArgTyrSerProAlaAsnGluIleValLeuGlyLeuGlnLeuMetSerThrValIleV : 212 !.! !!|||||| !|||||||||||||||! !:!!|||!!!:!:||| ! !!|||| AsnAspSerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleV 260284 : AACGACAGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAG : 260343 213 : alAsnSerValThrValGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAlaCy : 231 |||||||| !||||||||| !! !|||||||||||||||.!..!! |||||||| alAsnSerSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCy 260344 : TGAATTCGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTG : 260400 232 : sGlyGlnLeuAsnIleLeuMetIleLysLeuAspGluLeuValAspGlyThrGluGly : 250 |||||||||||||:!:|||||| ! !:!! |||!!!||||||! !:!!..!..! sGlyGlnLeuAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsn 260401 : CGGCCAGTTGAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAAC : 260457 251 : <->GluPheLysThrAsnHisArgLysLeuAlaValIleValGluHisHisLeuArgV : 269 :!! |||.!! ! !!:!:!!:!!!.!||||||||||||||||||||||||! ArgLysLysLysAlaProPheLysGluIleGlyValIleValGluHisHisLeuArgA 260458 : AGGAAGAAAAAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAG : 260517 270 : alLeu{Se} >>>> Target Intron 1 >>>> {r}PheValSerGlnIleGl : 277 .!|||{!!} 257 bp {!}|||:!!|||!::||||| laLeu{Th}++ ++{r}PheIleSerArgIleGl 260518 : CACTC{AC}gt.........................ag{C}TTCATATCGCGTATCGA : 260798 278 : uAlaIleMetHisHisIleCysLeuIleGluLeuLeuGlyCysThrIleAspIleCys : 296 |! !:!:|||:!!!..||||||!!!:!:||||||!!! !!||||||:!:||||||||| uAspValMetAsnArgIleCysPheLeuGluLeuPheArgCysThrLeuAspIleCys 260799 : GGATGTGATGAACCGGATATGCTTCCTGGAGTTGTTCAGGTGCACTCTGGATATATGT : 260855 297 : MetLeuGlyTyrTyrThrIleMet >>>> Target Intron 2 >>>> GluTr : 306 :!:||||||||||||! !:!!||| 852 bp ||||| LeuLeuGlyTyrTyrIleLeuMet++ ++GluTr 260856 : CTACTTGGCTACTATATTCTTATGgt.........................agGAATG : 261737 307 : pGluLeuHisAspThrLysAsnLeuLeuThrTyrPheThrIlePheIleSerMetSer : 325 |! !!!.|||! !:!!||||||! !|||||||||! !!!:.!.|||:!!!!:!!! pAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCys 261738 : GGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGT : 261794 326 : CysAsnIlePheIlePheCysTyrIleAlaGluIleLeuThrAspGln >>>> Tar : 342 ! !|||:!!||||||.!!|||||||||!.!||||||||||||!!:||| PheAsnValPheIleIleCysTyrIleGlyGluIleLeuThrGluGln++ 261795 : TTCAATGTATTTATAATCTGTTACATCGGTGAAATACTAACGGAACAGgt........ : 261847 343 : get Intron 3 >>>> CysGlnLysValGlyGluMetValTyrMetThrGluTrp : 354 81 bp |||..!|||||||||!!::!:||||||||||||.!.||| ++CysSerLysValGlyAspValValTyrMetThrAsnTrp 261848 : .................agTGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGG : 261962 355 : TyrArgLeuHisHisLysThrAlaHisAspLeuIleLeuIleIleSerArg-SerAsn : 373 ||| !|||! ! !!|||!:! !! !||||||||||||||||||:!!|||#!:!..! TyrTyrLeuProAspLysSerIleLeuAspLeuIleLeuIleIleAlaArg#AsnArg 261963 : TATTATTTACCTGATAAAAGTATCCTTGATTTGATTTTGATCATTGCACGAAAACCGC : 262020 374 : ThrValIleLysIleThrAlaGlyLysMetIleGlnLeu{S} >>>> Target In : 387 !! !|||!.. !!.!!.!||| ! :!!!:!! !{|} 71 b ArgGluIleSerSerAsnValGlyLeuHisValArgArg{S}++ 262021 : CGGGAAATTAGTTCAAATGTCGGTTTACACGTTCGGCGA{T}gt.............. : 262065 388 : tron 4 >>>> {er}IleAlaThrPheGlyAspValMetLysThrAlaPheAlaTy : 401 p {||}! ! !! !.!. !.!.|||:!:||||||||||||||||| +-{er}SerProLeuIlePheGlnValValLysThrAlaPheAlaTy 262066 : ...........ac{CA}AGTCCGTTGATATTCCAGGTGGTTAAAACTGCTTTCGCGTA : 262175 402 : rLeuAsnIleLeuArg : 406 |||||||:!:|||||| rLeuAsnLeuLeuArg 262176 : TCTGAATCTGTTGCGT : 262192 vulgar: CbirOr16 19 406 . KQ414889.1 259766 262192 + 911 M 19 57 G 1 0 M 40 120 G 0 3 M 171 513 G 0 3 M 20 60 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 30 90 F 0 1 M 15 45 S 0 1 5 0 2 I 0 67 3 0 2 S 1 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259767 262192 911 + . gene_id 2 ; sequence CbirOr16 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259767 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259767 260524 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262062 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262062 . + . insertions 0 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local splice5 262063 262064 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 262063 262133 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 262132 262133 . + . intron_id 3 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 262134 262192 . + . KQ414889.1 exonerate:protein2genome:local exon 262134 262192 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259767 262192 911 + . alignment_id 2 ; Query CbirOr16 ; Align 259767 20 57 ; Align 259824 40 120 ; Align 259947 80 513 ; Align 260463 251 60 ; Align 260783 272 99 ; Align 261734 305 111 ; Align 261926 342 90 ; Align 262017 372 45 ; Align 262136 388 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 765 Query range: 18 -> 410 Target range: 284514 -> 287341 19 : AspSerGluTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpP : 38 |||!!! !||||||:!!|||:!!|||||||||||||||||||||||||||!.!|||| AspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpP 284515 : GATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGC : 284572 39 : roArgAlaGlyAlaSerIleSerIleMetAsnLysLeuLeuSerArgGlyIleGlnPh : 57 || !.!! !!!!:!:!!!! !:!!.!.|||:!! !||| !! !:!! !!! ro---LeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLe 284573 : CT---CTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTT : 284626 58 : eThrCysHisSerLeuIleAlaSerThrValIleProCysIleLeuTyrIleLeuPhe : 76 .! ! !! !! !||||||!.!! ! !:!!:!!|||||| !|||! !! !:!!.!! uIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeu 284627 : AATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTC : 284683 77 : GluPro<-><->AspValTyrLeuLysLeuLysAlaPheGlyProMetIleHisTrpL : 94 !!: ! |||:!! !! !|||:!!||| !.!!||||||:!!! ! !!! : AspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysM 284684 : GACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCA : 284743 95 : euMetGlyGlyAlaAsnTyrCysSerLeuLeuSerSerSerHisLysIleArgLysCy : 113 !!|||!.!!.! !!!.|||! !! !|||:!!||| !!.!! !|||||| !!:!!|| etMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCy 284744 : TGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATG : 284800 114 : sValAspHisMetArgThrAspTrpGlnMetVal<-><-><->GluArgMetSerAsp : 129 |||| ! !!!!:|||.!!||||||...:!:..! ...::: ...::: sValLysAspIleArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGlu 284801 : CGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggag : 284857 130 : ArgGluValMetLeuArgAsnAlaArgPheGlyArgPheValSerThrPheCysAlaV : 149 ||||||:::||| ! !!:!||||||.!!||||||! !:!!:!!! !|||||||||! ArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaG 284858 : agagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCG : 284917 150 : alPheMetGlnGlyGlyValCysSerTyrSerValIleThrValLeuThrProValIl : 168 !|||||| ! ..!|||! !! !! !|||!!!..!:!:! ! !||| ! !!||| lyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysThrValAr 284918 : GTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACG : 284974 169 : eMetGlnIleGlyAsnIleThrIleThrMetArgGlnLeuProCysProPheTyrThr : 187 !! !:!!||| !:!! !.! |||:!!|||...! ! !!! !|||.!!||| ! gThrGluIleIleAsp---AsnGluThrValArgSerGlnAlaPheProIleTyrArg 284975 : CACGGAGATCATCGAC---AACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGC : 285028 188 : AspLeuValAspValArgTyrSerProAlaAsnGluIleValLeuGlyLeuGlnLeuM : 207 ! !|||:!!||| !||| !||||||:!! !|||||||||! ! !:!!|||! !: GlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysL 285029 : GGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCT : 285088 208 : etSerThrValIleValAsnSerValThrValGlyAlaCysSerLeuAlaAlaValPh : 226 !!:!!.!! !!:!!:!! !!|||||||||||||||||||||||||||||||||||||| euAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPh 285089 : TGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTT : 285145 227 : eAlaMetHisAlaCysGlyGlnLeuAsnIleLeuMetIleLysLeuAspGluLeuVal : 245 |!.!||||||!.!|||||||||!!!!..||||||:!!! !|||||||||:!!|||||| eValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuVal 285146 : CGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTC : 285202 246 : AspGlyThrGluGlyGlu<-><->PheLysThrAsnHisArgLysLeuAlaValIleV : 263 ||||||..!:!!|||..! !!.!..|||:!!.!.!:!::!|||!.!! !|||: AspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleI 285203 : GACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCA : 285262 264 : alGluHisHisLeuArgValLeu{Se} >>>> Target Intron 1 >>>> {r : 271 !!||||||||||||!:!:!!|||{.!} 1411 bp {! leGluHisHisLeuLysIleLeu{Gl}++ ++{y 285263 : TCGAGCATCATCTGAAGATACTG{GG}gt.........................ag{T : 286699 272 : }PheValSerGlnIleGluAlaIleMetHisHisIleCysLeuIleGluLeuLeuGly : 290 }|||:!!||||||||||||!.!:!!:!::!!.!.||||||!!!:!!|||:!!:!!||| }PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValIleGly 286700 : }TTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGT : 286754 291 : CysThrIleAspIleCysMetLeuGlyTyrTyrThrIleMet >>>> Target In : 305 ||||||:!::!!||||||.!.|||||||||||| !:!:! ! 80 b CysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeuThr++ 286755 : TGCACGTTGAACATATGCTTTTTGGGATATTATTTACTGACGgt.............. : 286801 306 : tron 2 >>>> GluTrpGluLeuHisAspThrLysAsnLeuLeuThrTyrPheThr : 319 p |||||||||! ! !!!:|||! !... !:!!||||||! !||| ++GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThr 286802 : ...........agGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACG : 286921 320 : IlePheIleSerMetSerCysAsnIlePheIlePheCysTyrIleAlaGluIleLeuT : 339 :!:.!.:!!|||.!.!!!! !|||:!!||||||.!!|||||||||!.!|||||||||: LeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuS 286922 : TTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCT : 286981 340 : hrAspGln >>>> Target Intron 3 >>>> CysGlnLysValGlyGluMet : 348 !!!!:||| 74 bp ||| !||||||||| ! erGluGln++ ++CysLeuLysValGlyLeuSer 286982 : CCGAACaggt.........................agtGCTTAAAAGTCGGCTTGTCA : 287082 349 : ValTyrMetThrGluTrpTyrArgLeuHisHisLysThrAlaHisAspLeuIleLeuI : 368 ..!||||||! !!!:||||||||||||! |||||||||!!.! !|||||||||| ThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuI 287083 : ACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGA : 287142 369 : leIleSerArgSerAsnThrValIleLysIleThrAlaGlyLysMetIleGlnLeuSe : 387 ||.!!:!! !||||||:!! !||||||:!!||||||||||||!!:|||.!.||||| lePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSe 287143 : TATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTC : 287199 388 : rIleAlaThrPheGlyAsp >>>> Target Intron 4 >>>> ValMetLysT : 397 |:!!::!!:!||| !!..! 71 bp |||:!!|||: rLeuSerSerPheCysSer++ ++ValLeuLysS 287200 : TTTAAGCAGCTTCTGCAGCgt.........................agGTGTTGAAAT : 287300 398 : hrAlaPheAlaTyrLeuAsnIleLeuArgThrValAlaThr : 410 !!|||||||||||||||!:!:!!|||||||||:!!.!!||| erAlaPheAlaTyrLeuSerLeuLeuArgThrLeuThrThr 287301 : CGGCATTCGCATATCTGAGCTTATTACGTACGCTAACCACA : 287341 vulgar: CbirOr16 18 410 . KQ414889.1 284514 287341 + 765 M 20 60 G 1 0 M 39 117 G 0 6 M 46 138 G 0 9 M 49 147 G 1 0 M 77 231 G 0 6 M 19 57 S 0 2 5 0 2 I 0 1407 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284515 287341 765 + . gene_id 3 ; sequence CbirOr16 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284515 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284515 285287 . + . insertions 21 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286698 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287220 287221 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 287220 287290 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287289 287290 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 287291 287341 . + . KQ414889.1 exonerate:protein2genome:local exon 287291 287341 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284515 287341 765 + . alignment_id 3 ; Query CbirOr16 ; Align 284515 19 60 ; Align 284575 40 117 ; Align 284698 79 138 ; Align 284845 125 147 ; Align 284992 175 231 ; Align 285229 252 57 ; Align 286700 272 99 ; Align 286879 305 111 ; Align 287064 342 156 ; Align 287291 394 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 745 Query range: 18 -> 410 Target range: 278567 -> 280554 19 : AspSerGluTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpP : 38 |||!!! !||||||:!!|||:!!|||||||||||||||||||||||||||!.!|||| AspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpP 278568 : GATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGC : 278625 39 : roArgAlaGlyAlaSerIleSerIleMetAsnLysLeuLeuSerArgGlyIleGlnPh : 57 || !.!! !!!!:!:!!!! !:!!.!.|||:!! !||| !! !:!! !!! ro---LeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLe 278626 : CT---CTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTT : 278679 58 : eThrCysHisSerLeuIleAlaSerThrValIleProCysIleLeuTyrIleLeuPhe : 76 .! ! !! !! !||||||!.!! ! !:!!:!!|||||| !|||! !! !:!!.!! uIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeu 278680 : AATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTC : 278736 77 : GluPro<-><->AspValTyrLeuLysLeuLysAlaPheGlyProMetIleHisTrpL : 94 !!: ! |||:!! !! !|||:!!||| !.!!||||||:!:! ! !!! AspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysT 278737 : GACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCA : 278796 95 : euMetGlyGlyAlaAsnTyrCysSerLeuLeuSerSerSerHisLysIleArgLysCy : 113 !|||!.! ! !!!.|||! !! !|||:!!||| !!.!! !|||||| !!||||| hrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCy 278797 : CGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATG : 278853 114 : sValAspHisMetArgThrAspTrpGlnMetVal<-><-><->GluArgMetSerAsp : 129 ||||:!! !!!!:||||||||||||...:!:..! ...::: ...::: sValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGlu 278854 : CGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggag : 278910 130 : ArgGluValMetLeuArgAsnAlaArgPheGlyArgPheValSerThrPheCysAlaV : 149 ||||||:::||| ! !!:!||||||.!!||||||! !:!!:!!! !||| !!|||! ArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaG 278911 : agagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCG : 278970 150 : alPheMetGlnGlyGlyValCysSerTyrSerValIleThrValLeuThrProValIl : 168 !|||||| ! ..!|||! ! !! !|||!!!!.!:!:! ! !||| ! !!||| lyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValAr 278971 : GTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACG : 279027 169 : eMetGlnIleGlyAsnIleThrIleThrMetArgGlnLeuProCysProPheTyrThr : 187 !! !:!!||| !:!! !.! !|||:!!|||...! ! !!! !|||.!!||| ! gThrGluIleIleAsp---AsnGluThrValArgSerGlnAlaPheProIleTyrArg 279028 : CACGGAGATCATCGAC---AATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGC : 279081 188 : AspLeuValAspValArgTyrSerProAlaAsnGluIleValLeuGlyLeuGlnLeuM : 207 ! !|||:!!||| !||| !||||||:!! !|||||||||! ! !:!!|||! !: GlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysL 279082 : GGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCT : 279141 208 : etSerThrValIleValAsnSerValThrValGlyAlaCysSerLeuAlaAlaValPh : 226 !!:!!.!! !!:!!:!! !!||||||||||||||||||||||||||| !|||||||| euAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPh 279142 : TGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTT : 279198 227 : eAlaMetHisAlaCysGlyGlnLeuAsnIleLeuMetIleLysLeuAspGluLeuVal : 245 |!.!||||||!.!|||||||||!!!!..||||||:!!! !|||||||||:!!|||:!! eValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIle 279199 : CGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATC : 279255 246 : AspGlyThrGluGly<-><->GluPheLysThrAsnHisArgLysLeuAlaValIleV : 263 ||||||..!:!!||| ...!!.!..|||:!!.!.!:!::!|||!.!! !|||: AspGlyValLysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleI 279256 : GACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCA : 279315 264 : alGluHisHisLeuArgValLeu{Se} >>>> Target Intron 1 >>>> {r : 271 !!||||||||||||!:!:!!|||{.!} 571 bp {! leGluHisHisLeuLysIleLeu{Gl}++ ++{y 279316 : TCGAGCATCATCTGAAGATACTG{GG}gt.........................ag{T : 279912 272 : }PheValSerGlnIleGluAlaIleMetHisHisIleCysLeuIleGluLeuLeuGly : 290 }|||:!!||||||||||||!.!:!!:!!:!!.!.||||||!!!:!!|||:!!:!!||| }PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValIleGly 279913 : }TTTATATCGCAAATCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTGATTGGT : 279967 291 : CysThrIleAspIleCysMetLeuGlyTyrTyrThrIleMet >>>> Target In : 305 ||||||:!::!!||||||.!.||| !|||||| !:!!! ! 80 b CysThrLeuAsnIleCysPheLeuThrTyrTyrLeuLeuThr++ 279968 : TGCACGTTGAACATATGCTTTTTGACATATTATTTACTCACGgt.............. : 280014 306 : tron 2 >>>> GluTrpGluLeuHisAspThrLysAsnLeuLeuThrTyrPheThr : 319 p |||||||||! !:!!|||.!!! !... !!!!||||||!!.! ! ++GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMet 280015 : ...........agGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATG : 280134 320 : IlePheIleSerMetSerCysAsnIlePheIlePheCysTyrIleAlaGluIleLeuT : 339 .!!.!!||||||:!:!!!! !|||:!!||||||.!!|||||||||!.!|||||||||: PheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuS 280135 : TTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCT : 280194 340 : hrAspGln >>>> Target Intron 3 >>>> CysGlnLysValGlyGluMet : 348 !!!!:||| 74 bp ||| !|||||||||! ! erGluGln++ ++CysLeuLysValGlyValSer 280195 : CCGAACaggt.........................agTGCTTAAAAGTCGGCGTGTCA : 280295 349 : ValTyrMetThrGluTrpTyrArgLeuHisHisLysThrAlaHisAspLeuIleLeuI : 368 ..!||||||! !!!:||||||||||||! |||! !|||!!.! !|||||||||| ThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuI 280296 : ACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGA : 280355 369 : leIleSerArgSerAsnThrValIleLysIleThrAlaGlyLysMetIleGlnLeuSe : 387 ||.!!:!! !||||||:!! !||||||:!!||||||||||||!!:|||.!.||||| lePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSe 280356 : TATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTC : 280412 388 : rIleAlaThrPheGlyAsp >>>> Target Intron 4 >>>> ValMetLysT : 397 |:!!::!!:!||| !!..! 71 bp |||:!:|||| rLeuSerSerPheCysSer++ ++ValLeuLysT 280413 : TTTAAGCAGCTTCTGCAGCgt.........................agGTGTTAAAAA : 280513 398 : hrAlaPheAlaTyrLeuAsnIleLeuArgThrValAlaThr : 410 |||||||||||||||||!:!:!!|||||||||:!!.!!||| hrAlaPheAlaTyrLeuSerLeuLeuArgThrLeuThrThr 280514 : CGGCATTCGCATATCTGAGCTTATTACGTACGCTTACCACA : 280554 vulgar: CbirOr16 18 410 . KQ414889.1 278567 280554 + 745 M 20 60 G 1 0 M 39 117 G 0 6 M 46 138 G 0 9 M 49 147 G 1 0 M 76 228 G 0 6 M 20 60 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278568 280554 745 + . gene_id 4 ; sequence CbirOr16 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278568 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278568 279340 . + . insertions 21 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280554 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280554 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278568 280554 745 + . alignment_id 4 ; Query CbirOr16 ; Align 278568 19 60 ; Align 278628 40 117 ; Align 278751 79 138 ; Align 278898 125 147 ; Align 279045 175 228 ; Align 279279 251 60 ; Align 279913 272 99 ; Align 280092 305 111 ; Align 280277 342 156 ; Align 280504 394 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 733 Query range: 15 -> 408 Target range: 217156 -> 219800 16 : HisGlnGlnAspSerGluTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleG : 35 :::::::::::: ... |||||||||! !|||||||||!!.|||||||||!!:| TyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetG 217157 : tacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGG : 217214 36 : lyAlaTrpProArgAlaGlyAlaSerIleSerIleMetAsnLysLeuLeuSerArgGl : 54 || !||||||!.!:!! !!!!! !!!!! ! ...|||:!!|||! !!:! lyLeuTrpProAsnSer---ArgThrThrThrArgSerArgLysIleLeuTyrLysLe 217215 : GTCTTTGGCCAAACTCA---CGTACCACCACCAGATCCCGAAAAATCCTCTACAAACT : 217268 55 : yIleGlnPheThrCysHisSerLeuIleAlaSerThrValIleProCysIleLeuTyr : 73 !|||.!. ! !|||:!!.!!||||||::!! ! ! !!:!!|||||| !:!!||| uIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyr 217269 : GATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTAC : 217325 74 : IleLeuPheGlu<->ProAspValTyrLeuLysLeuLysAlaPheGlyProMetIleH : 92 :!:!!!.!!||| !|||:!!||| !||||||||| !|||||||||:!!||| ValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIleP 217326 : GTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCT : 217385 93 : isTrpLeuMetGlyGlyAlaAsnTyrCysSerLeuLeuSerSerSerHisLysIleAr : 111 !!! :!!|||!.! !!.!!!.|||! !||||||:!! ! !!.! ! ||||| heCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleAr 217386 : TCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCG : 217442 112 : gLysCysValAspHisMetArgThrAspTrpGlnMetValGluArgMetSerAspArg : 130 |:!!|||||| ...!!:..! !||||||::!! |||..! !! !!.!|||||| gGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArg 217443 : CGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGG : 217499 131 : GluValMetLeuArgAsnAlaArgPheGlyArgPheValSerThrPheCysAlaValP : 150 |||!.!|||:!! !||||||!.!||||||||| :!! ! !.!!|||.!! !!| GluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPheP 217500 : GAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCT : 217559 151 : heMetGlnGlyGlyValCysSerTyrSerValIleThrValLeuThrProValIleMe : 169 ||||| ! .!!||| ||| ::! !! ! !:!!!:! !! !! !!! heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIl 217560 : TCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAAT : 217616 170 : tGlnIleGlyAsnIleThrIleThrMetArgGlnLeuProCysProPheTyrThrAsp : 188 :! ! ! !||| !!.!:!!|||.!.! !! !||| !! !|||||| ! ! !! eLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyr 217617 : TCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTAT : 217673 189 : LeuValAspValArgTyrSerProAlaAsnGluIleValLeuGlyLeuGlnLeuMetS : 208 :!!:!!|||..!||||||!!!|||.!!||||||||||||!!! !|||||||||!!:: IleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleA 217674 : ATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCG : 217733 209 : erThrValIleValAsnSerValThrValGlyAlaCysSerLeuAlaAlaValPheAl : 227 !! !!.!:!::!!:!!.!!:!!||| !!.!||||||||||||||||||!.!||||| laGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAl 217734 : CTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGC : 217790 228 : aMetHisAlaCysGlyGlnLeuAsnIleLeuMetIleLysLeuAspGluLeuValAsp : 246 |:!:|||||||||||||||:!!.!.:!:||||||! ! !|||.!..!.|||:!!||| aValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAsp 217791 : GGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGAC : 217847 247 : GlyThrGluGlyGluPheLysThrAsnHisArgLysLeuAlaValIleValGluHisH : 266 |||! !! !! ! ! ! ! ||| !! !!!:!:!!||| !||||||...!!.| GlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnH 217848 : GGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAAC : 217907 267 : isLeuArgValLeuSerPheValSerGlnIleGlu{A} >>>> Target Intron : 278 ||:!!|||:!!|||!.!! !|||!!! !!|||! {!} 1226 bp isValArgIleLeuLysCysValArg***IleVal{G}++ 217908 : ACGTTCGGATATTAAAGTGTGTAAGATAGATCGTT{G}gt.................. : 217946 279 : 1 >>>> {la}<->IleMetHisHisIleCysLeuIleGluLeuLeuGlyCysThr : 292 { !} ! !:!:!!.!!.|||! !!!! !|||!!!|||||||||||| ++{lu}ArgThrLeuGlnGlnIleSerPheAlaGluPheLeuGlyCysThr 217947 : .......ag{AG}AGAACCCTCCAGCAAATCTCTTTCGCTGAATTTCTAGGATGCACC : 219214 293 : IleAspIleCysMetLeuGlyTyrTyrThrIleMet >>>> Target Intron 2 : 305 !!:|||||||||:!::!!|||||||||! !|||:!! 76 bp MetAspIleCysLeuValGlyTyrTyrIleIleVal++ 219215 : ATGGACATATGTCTCGTTGGATATTACATTATCGTGgt.................... : 219255 306 : >>>> GluTrpGluLeuHisAspThrLysAsnLeuLeuThrTyrPheThrIlePhe : 321 ||||||:!!! !:!!|||..!! !!:! !:!!||||||.!!! !:!!.!! ++GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeu 219256 : .....agGAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTT : 219377 322 : IleSerMetSerCysAsnIlePheIlePheCysTyrIleAlaGluIleLeuThrAspG : 341 ||||||:!:::: ||||||||||||||||||||||||!.!||||||:!!.!!!!:| IleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluG 219378 : ATATCCCTcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAAC : 219437 342 : ln >>>> Target Intron 3 >>>> CysGlnLysValGlyGluMetValTyr : 350 || 73 bp |||:::|||:::||||||||| !||| ln++ ++CysArgLysIleGlyGluMetSerTyr 219438 : Aggt.........................agTGtaggaaaattggagaaatgtCGTAC : 219537 351 : MetThrGluTrpTyrArgLeuHisHisLysThrAlaHisAspLeuIleLeuIleIleS : 370 |||! !||||||||||||||| |||! ! !! ! !:!!|||! !|||: MetIleGluTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleA 219538 : ATGATCGAATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCG : 219597 371 : erArgSerAsnThrValIleLysIleThrAlaGlyLysMetIleGlnLeuSerIleAl : 389 !!! !||||||:!! !||||||:!:|||||||||!!.|||:!!:!!|||||||||:: laMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSe 219598 : CTATGTCGAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAG : 219654 390 : aThrPheGlyAsp >>>> Target Intron 4 >>>> ValMetLysThrAlaP : 399 !|||||| !||| 87 bp |||:!:||||||||| rThrPheThrAsp++ ++ValValLysThrAlaV 219655 : CACTTTTACCGACgt.........................agGTCGTTAAGACTGCAG : 219771 400 : heAlaTyrLeuAsnIleLeuArgThrVal : 408 !!.!!!:!||||||:!!|||||||||:!! alThrPheLeuAsnValLeuArgThrLeu 219772 : TCACGTTTCTGAATGTACTACGAACATTG : 219800 vulgar: CbirOr16 15 408 . KQ414889.1 217156 219800 + 733 M 25 75 G 1 0 M 36 108 G 0 3 M 200 600 S 0 1 5 0 2 I 0 1222 3 0 2 S 1 2 G 0 3 M 26 78 5 0 2 I 0 72 3 0 2 M 37 111 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 83 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217157 219800 733 + . gene_id 5 ; sequence CbirOr16 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217157 217943 . + . KQ414889.1 exonerate:protein2genome:local exon 217157 217943 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 217944 217945 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217944 219169 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219168 219169 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219170 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219170 219252 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219668 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219668 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219669 219670 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219669 219755 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 219754 219755 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219756 219800 . + . KQ414889.1 exonerate:protein2genome:local exon 219756 219800 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217157 219800 733 + . alignment_id 5 ; Query CbirOr16 ; Align 217157 16 75 ; Align 217232 42 108 ; Align 217343 78 600 ; Align 219175 279 78 ; Align 219329 305 111 ; Align 219513 342 156 ; Align 219756 394 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 728 Query range: 19 -> 303 Target range: 274377 -> 275306 20 : SerGluTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProA : 39 |||!!:||||||:!:|||||||||||||||||||||||||||||||||||||||||| SerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProL 274378 : AGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGT : 274435 40 : rgAlaGlyAlaSerIleSerIleMetAsnLysLeuLeuSerArgGlyIleGlnPheTh : 58 !|||..! !!!!!! !.! .!..!.::!:!!||||||!.! ::: ||| euAlaSerProThrThrLys---PheGluArgIleLeuSerHisLeuLeuIlePheLe 274436 : TAGCCTCGCCCACCACGAAA---TTCGAACGAATCCTTTCACACCttttaatcttcct : 274489 59 : rCysHisSerLeuIleAlaSerThrValIleProCysIleLeuTyr<->IleLeuPhe : 76 |||:!!!!!!!!||| !||||||||||||||| !!|||!!!:!! |||||| ! uCysTyrCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuVal 274490 : ttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTA : 274546 77 : GluProAspValTyrLeuLysLeuLysAlaPheGlyProMetIleHisTrpLeuMetG : 96 !!: !..!:!!:!!|||||||||||| !.!!||||||:!: !||||||!!!!!:| AspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleG 274547 : GATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCG : 274606 97 : lyGlyAlaAsnTyrCysSerLeuLeuSerSerSerHisLysIleArgLysCysValAs : 115 ||||| !|||||| !!!!|||||| ! !!||| ! :!!|||||| ||||||!! lyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGl 274607 : GAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGA : 274663 116 : pHisMetArgThrAspTrpGlnMetValGluArgMetSerAspArgGluValMetLeu : 134 :||||||!:!|||||||||::!!!:||| ||| !..!|||!:!:!!||||||||| uHisMetGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeu 274664 : GCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTG : 274720 135 : ArgAsnAlaArgPheGlyArgPheValSerThrPheCysAlaValPheMetGlnGlyG : 154 !:!||||||!:!.!!||||||!:!|||:!!! !|||||||||!.!||||||||| !!| LysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysG 274721 : AAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCG : 274780 155 : lyValCysSerTyrSerValIleThrValLeuThrProValIleMetGlnIleGlyAs : 173 ||||| !!!!|||!!!|||||||||!.!!!!||| ! !! !:!:|||:!!||||| lyValLeuCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAs 274781 : GTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAA : 274837 174 : nIleThrIleThrMetArgGlnLeuProCysProPheTyrThrAspLeuValAspVal : 192 | |||! !|||:!!!.!..!||||||||| ! !|||! ! ! :!!|||! ||| nGluThrArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaVal 274838 : CGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTG : 274894 193 : ArgTyrSerProAlaAsnGluIleValLeuGlyLeuGlnLeuMetSerThrValIleV : 212 ! ||||||.!!|||||||||||||||!.!! !|||!!!:!!||| ! !!|||| AspThrSerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleV 274895 : GACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCG : 274954 213 : alAsnSerValThrValGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAlaCy : 231 |||||||| !.!!|||||||||! !||||||||||||||||||||| ||||||! alAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTy 274955 : TGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTA : 275011 232 : sGlyGlnLeuAsnIleLeuMetIleLysLeuAspGluLeuValAspGlyThrGluGly : 250 !|||||||||!:!:!:||||||||| !:!! !|||!!!|||:!! !:!!..!! rGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAsp 275012 : CGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAt : 275068 251 : GluPheLysThrAsnHis<->ArgLysLeuAlaValIleValGluHisHisLeuArgV : 269 ::: |||... ::: !:!!:!!!.!|||:!!||||||||||||||||||| GlnAsnLysAsnValTyrPheSerGluIleGlyValValValGluHisHisLeuArgV 275069 : cagaataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGG : 275128 270 : alLeu{Se} >>>> Target Intron 1 >>>> {r}PheValSerGlnIleGl : 277 |||||{||} 74 bp {|}|||:!!:!!!::||||| alLeu{Se}++ ++{r}PheIleAlaArgIleGl 275129 : TACTC{AG}gt.........................ag{T}TTCATAGCACGTATCGA : 275226 278 : uAlaIleMetHisHisIleCysLeuIleGluLeuLeuGlyCysThrIleAspIleCys : 296 |! !:!:|||:!!!..||||||!!!!!:||||||!!! !||||||:!:|||!!:||| uAspValMetAsnArgIleCysPheMetGluLeuPheLysCysThrLeuAspMetCys 275227 : GGATGTGATGAATCGAATATGCTTCATGGAATTGTTCAAGTGTACTCTGGATATGTGC : 275283 297 : MetLeuGlyTyrTyrThrIle : 303 |||||||||||||||! !:!! MetLeuGlyTyrTyrIleLeu 275284 : ATGCTTGGCTATTACATTCTC : 275306 vulgar: CbirOr16 19 303 . KQ414889.1 274377 275306 + 728 M 26 78 G 1 0 M 27 81 G 0 3 M 183 549 G 0 3 M 14 42 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274378 275306 728 + . gene_id 6 ; sequence CbirOr16 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274378 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274378 275135 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274378 275306 728 + . alignment_id 6 ; Query CbirOr16 ; Align 274378 20 78 ; Align 274456 47 81 ; Align 274540 74 549 ; Align 275092 257 42 ; Align 275211 272 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 709 Query range: 19 -> 303 Target range: 266631 -> 267555 20 : SerGluTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProA : 39 |||!!:||||||:!:||||||||||||||||||||||||||||||||||||||||||! SerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProP 266632 : AGCGATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGC : 266689 40 : rgAlaGlyAlaSerIleSerIleMetAsnLysLeuLeuSerArgGlyIleGlnPheTh : 58 ! !..! !!!! |||! !:!:.!.::!:!!:!!||| !!.!:!: !!! roLeuSerLeuThr---SerLysLeuGluArgIleValSerTyrAlaLeuIleValIl 266690 : CGTTGTCACTCACA---TCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCAT : 266743 59 : rCysHisSerLeuIleAlaSerThrValIleProCysIleLeuTyrIleLeuPheGlu : 77 !|||:!!!!!! !||| !! !|||||||||||||||:!:!!!:!!:!!:!!.!.||| eCysTyrCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGlu 266744 : CTGCTACTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAG : 266800 78 : ProAsp<->ValTyrLeuLysLeuLysAlaPheGlyProMetIleHisTrpLeuMetG : 96 !!!: :!! ! !|||:!!|||!.!|||||||||:!!! !||||||!!!:!:| AspGluSerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValG 266801 : GACGAGAGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCG : 266860 97 : lyGlyAlaAsnTyrCysSerLeuLeuSerSerSerHisLysIleArgLysCysValAs : 115 ||||| !|||||| !!!!|||||| ! !!||| ! :!!|||||| ||||||!! lyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGl 266861 : GAGGAATTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGA : 266917 116 : pHisMetArgThrAspTrpGlnMetValGluArgMetSerAspArgGluValMetLeu : 134 :||||||!:!|||||||||::!!!:||| ||| !..!|||!:!:!!||||||||| uHisMetGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeu 266918 : GCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTG : 266974 135 : ArgAsnAlaArgPheGlyArgPheValSerThrPheCysAlaValPheMetGlnGlyG : 154 !:!|||||||||.!!||||||!:!:!!:!!! !|||||||||!.!||||||||| !!| LysAsnAlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysG 266975 : AAGAACGCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCG : 267034 155 : lyValCysSerTyrSerValIleThrValLeuThrProValIleMetGlnIleGlyAs : 173 ||||| !.!!|||!!!|||||||||!.!!!!||| ! !! !:!!:!!:!!||||| lyValLeuGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAs 267035 : GTGTTCTCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAA : 267091 174 : nIleThrIleThrMetArgGlnLeuProCysProPheTyrThrAspLeuValAspVal : 192 | |||! ! !:!:!.!! !||||||||| !! !!|||! ! ! :!!:!!! ||| nGluThrArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaVal 267092 : CGAGACTAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTT : 267148 193 : ArgTyrSerProAlaAsnGluIleValLeuGlyLeuGlnLeuMetSerThrValIleV : 212 ! !||||||.!!|||||||||||||||! !! !|||!!!:!:||| ! !!|||| AspThrSerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleV 267149 : GATACCAGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCG : 267208 213 : alAsnSerValThrValGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAlaCy : 231 |||||||| !..!|||||||||! !||||||||||||||||||||| |||||||| alAsnSerSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCy 267209 : TGAATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTG : 267265 232 : sGlyGlnLeuAsnIleLeuMetIleLysLeuAspGluLeuValAspGlyThrGluGly : 250 ||||||||||!:!:!:||||||!!: !:!! ! |||!!!|||:!! !!:!!..!! ! sGlyGlnLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAsp 267266 : CGGACAGCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGAT : 267322 251 : GluPheLys<->ThrAsnHisArgLysLeuAlaValIleValGluHisHisLeuArgV : 269 ... !||| ..! ! ! !|||:!!!.!|||:!!||||||||||||||||||| SerAsnLysAsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgV 267323 : AGCAATAAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAG : 267382 270 : alLeu{Se} >>>> Target Intron 1 >>>> {r}PheValSerGlnIleGl : 277 |||||{||} 69 bp {|}|||:!!:!!!::||||| alLeu{Se}++ ++{r}PheIleAlaArgIleGl 267383 : TTTTG{AG}gt.........................ag{C}TTCATAGCACGTATCGA : 267475 278 : uAlaIleMetHisHisIleCysLeuIleGluLeuLeuGlyCysThrIleAspIleCys : 296 |::!:!!||| !.!.||||||!!!!!:||||||!!! !||||||!!:||||||||| uSerValMetSerGluIleCysPheMetGluLeuPheLysCysThrMetAspIleCys 267476 : AAGTGTAATGAGCGAAATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGC : 267532 297 : MetLeuGlyTyrTyrThrIle : 303 :!!|||.!!||||||! !:!! ValLeuSerTyrTyrIleLeu 267533 : GTGCTTAGCTATTATATCCTT : 267555 vulgar: CbirOr16 19 303 . KQ414889.1 266631 267555 + 709 M 24 72 G 1 0 M 35 105 G 0 3 M 174 522 G 0 3 M 17 51 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266632 267555 709 + . gene_id 7 ; sequence CbirOr16 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266632 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266632 267389 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267555 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266632 267555 709 + . alignment_id 7 ; Query CbirOr16 ; Align 266632 20 72 ; Align 266704 45 105 ; Align 266812 80 522 ; Align 267337 254 51 ; Align 267460 272 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 684 Query range: 15 -> 408 Target range: 226912 -> 230515 16 : HisGlnGlnAspSerGluTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleG : 35 :!!|||:!! !!! !.!. |||||||||||||||||||||.!.|||||||||:!!| TyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuG 226913 : TATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCG : 226970 36 : lyAlaTrpProArgAlaGlyAlaSerIleSerIleMetAsnLysLeuLeuSerArgGl : 54 || !|||||| !:!! !! !||| ||| !!!:...!:!! !!!!||| !! lyIleTrpProSerSerArgLysSer---SerArgIleGlyArgCysPheSerTrpLe 226971 : GTATCTGGCCGTCGTCGCGCAAAAGC---TCTCGAATAGGAAGATGTTTCTCCTGGTT : 227024 55 : yIleGlnPheThrCysHisSerLeuIleAlaSerThrValIleProCysIleLeuTyr : 73 !!!: ||| !|||:!!:!!|||!!:::!! ! !:!!:!! !! !! !|||||| uMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyr 227025 : GATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTAC : 227081 74 : IleLeuPheGlu<->ProAspValTyrLeuLysLeuLysAlaPheGlyProMetIleH : 92 :!::!!.!.||| !! !!.!||| !! !|||||| !.!!||||||||| ! ValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerP 227082 : GTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCT : 227141 93 : isTrpLeuMetGlyGlyAlaAsnTyrCysSerLeuLeuSerSerSerHisLysIleAr : 111 !!:: !|||..! ! !!!.|||! !! !||| !! ! !..! !! ! |||! hePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLe 227142 : TCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCT : 227198 112 : gLysCysValAspHisMetArgThrAspTrpGlnMetValGluArgMetSerAspArg : 130 !:!!||||||!!:!..!!:!:! !||||||:!!! :!!..! !:!!..!|||||| uGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArg 227199 : CGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGA : 227255 131 : GluValMetLeuArgAsnAlaArgPheGlyArgPheValSerThrPheCysAlaValP : 150 .!.||||||:!!! ! !!||| !!:!|||||| :!!! !|||.!!|||.!! !!| AsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPheP 227256 : AACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTT : 227315 151 : heMetGlnGlyGlyValCysSerTyrSerValIleThrValLeuThrProValIleMe : 169 ||:!: ...... ::: :!!:!!..! !:!!!.! !!! !! !:! heValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerVa 227316 : TCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGT : 227372 170 : tGlnIleGlyAsnIleThrIleThrMetArgGlnLeuProCysProPheTyrThrAsp : 188 : !! ! !:!! !!.! !!:! ! !|||:!!|||! !|||||| ! ! ! lAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIle 227373 : TGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATC : 227429 189 : LeuValAspValArgTyrSerProAlaAsnGluIleValLeuGlyLeuGlnLeuMetS : 208 :!!!.!|||||||||||||||||| !||||||||| !!!!!..!:!!|||!!!:!:! IleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValT 227430 : ATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAA : 227489 209 : erThrValIleValAsnSerValThrValGlyAlaCysSerLeuAlaAlaValPheAl : 227 !! !:!!:!::!!:!!.!!|||||| !!.!|||||||||:!!||||||:!!.!!|| hrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAl 227490 : CAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGC : 227546 228 : aMetHisAlaCysGlyGlnLeuAsnIleLeuMetIleLysLeuAspGluLeuValAsp : 246 |:!:|||||||||||||||:!!.!.:!:|||:!! ! !|||! .!.|||:!!||| aValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAsp 227547 : GGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGAC : 227603 247 : GlyThrGluGlyGluPheLysThrAsnHisArgLysLeuAlaValIleValGluHisH : 266 |||! !! !! ! ! !|||||| !! !!:!:!!||| !|||||| |||| GlyArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValThrHisH 227604 : GGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACC : 227663 267 : isLeuArgValLeu{Se} >>>> Target Intron 1 >>>> {r}PheValSe : 274 ||:!!|||:!!|||{!:} 396 bp {!}|||:!!:! isValArgIleLeu{As}++ ++{n}PheLeuAl 227664 : ACGTTCGAATATTG{AA}gt.........................ag{C}TTTCTGGC : 228083 275 : rGlnIleGluAlaIleMetHisHisIleCysLeuIleGluLeuLeuGlyCysThrIle : 293 !! |||||| !! !|||!!.!!.|||..!!!!:!!|||!!!||||||||||||||| aLeuIleGluLysThrMetGlnGlnIleAlaPheValGluPheLeuGlyCysThrIle 228084 : CCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGTACAATA : 228140 294 : AspIleCysMetLeuGlyTyrTyrThrIleMet >>>> Target Intron 2 >> : 305 !:!:|||:!::!!! !||||||! !|||! ! 72 bp IleLeuCysLeuIleGluTyrTyrIleIleThr++ 228141 : ATTCTGTGCCTCATCGAGTATTACATCATAACGgt....................... : 228178 306 : >> GluTrpGluLeuHisAspThrLysAsnLeuLeuThrTyrPheThrIlePheIle : 322 ||||||.!.! ! ! !!: !! ! ! !:!!||||||! .!!:!!.!!:!! ++GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeu 228179 : ..agGAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTA : 228299 323 : SerMetSerCysAsnIlePheIlePheCysTyrIleAlaGluIleLeuThrAspGln : 342 |||.!.!:: ||||||||||||||||||||||||!.!||||||:!!.!!!!:!!. SerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluHis+ 228300 : TCCTTTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACg : 228359 343 : >>>> Target Intron 3 >>>> CysGlnLysValGlyGluMetValTyrMet : 351 1889 bp |||::!||||||||||||! ! !|||||| + ++CysArgLysValGlyGluLysSerTyrMet 228360 : t.........................agTGCAGAAAAGTCGGCGAAAAGTCGTACATG : 230275 352 : ThrGluTrpTyrArgLeuHisHisLysThrAlaHisAspLeuIleLeuIleIleSerA : 371 ! !||||||||||||||| ! !!.! ! !! ! !! !||||||||||||:!!! IleGluTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaM 230276 : ATCGAATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCA : 230335 372 : rgSerAsnThrValIleLysIleThrAlaGlyLysMetIleGlnLeuSerIleAlaTh : 390 !|||||| ! !! |||.!!|||||||||!!.|||:!!:!!||||||:!! !|| etSerAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnTh 230336 : TGTCCAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACAC : 230392 391 : rPheGlyAsp >>>> Target Intron 4 >>>> ValMetLysThrAlaPheA : 400 ||||.!!||| 67 bp |||:!:||||||:!!.!.! rPheSerAsp++ ++ValValLysThrSerMetG 230393 : TTTCAGCGACgt.........................agGTCGTTAAAACGTCCATGG : 230489 401 : laTyrLeuAsnIleLeuArgThrVal : 408 .!!:!||||||!!:|||||||||:!! lyPheLeuAsnMetLeuArgThrLeu 230490 : GTTTCTTAAACATGCTACGAACACTG : 230515 vulgar: CbirOr16 15 408 . KQ414889.1 226912 230515 + 684 M 28 84 G 1 0 M 33 99 G 0 3 M 193 579 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226913 230515 684 + . gene_id 8 ; sequence CbirOr16 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226913 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226913 227679 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230403 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230403 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 230404 230405 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 230404 230470 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 230469 230470 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230471 230515 . + . KQ414889.1 exonerate:protein2genome:local exon 230471 230515 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226913 230515 684 + . alignment_id 8 ; Query CbirOr16 ; Align 226913 16 84 ; Align 226997 45 99 ; Align 227099 78 579 ; Align 228077 272 99 ; Align 228248 305 111 ; Align 230248 342 156 ; Align 230471 394 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 615 Query range: 12 -> 341 Target range: 208185 -> 210774 13 : AsnValMetHisGlnGlnAspSerGluTyrSerIleGlnLeuAsnArgTrpPheLeuL : 32 ||| !! :!!:!!.!.||| !...!:!!:!:!!!::|||||| !||| |||| AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 33 : ysProIleGlyAlaTrpProArgAlaGlyAlaSerIleSerIleMetAsnLysLeuLe : 51 || !||||||:!!|||||||||:!! !..! !||| :!:.!.!!. !! ysIleIleGlySerTrpProArgSer---IleAspArgSerTrpLeuGluAsnSerGl 208244 : AGATAATCGGCTCCTGGCCGAGATCT---ATAGATCGTTCCTGGTTAGAGAACAGCCA : 208297 52 : uSerArgGlyIleGlnPheThrCysHisSerLeuIleAlaSerThrValIleProCys : 70 ! !! ! !:!!.!. ! ! !!|||!!!|||:!!!.!! !! !||||||||| ! nHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThr 208298 : GCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACC : 208354 71 : IleLeuTyr<->IleLeuPheGluProAspValTyrLeuLysLeuLysAlaPheGlyP : 89 !:!!!:! |||||| ! ! !||| !!||| !:!!|||||| !! !.!! GlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerA 208355 : GGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCG : 208414 90 : roMetIleHisTrpLeuMetGlyGlyAlaAsnTyrCysSerLeuLeuSerSerSerHi : 108 !!:!!! ! !!:::!!|||!.! !.!!!!.||| ! !:!! ! ! !!..! laLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGl 208415 : CTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGG : 208471 109 : sLysIleArgLysCysValAspHisMetArgThrAspTrpGlnMetValGluArgMet : 127 ! ! |||||||||||||||!!::!!:!:..!.!!||||||::!! ||||||!.! ! yAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGlu 208472 : TGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAG : 208528 128 : SerAspArgGluValMetLeuArgAsnAlaArgPheGlyArgPheValSerThrPheC : 147 ..!||||||:!!:!!|||||| !||||||!!!|||!.!||| :!!! !..!.!.| GluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleC 208529 : GAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATAT : 208588 148 : ysAlaValPheMetGlnGlyGlyValCysSerTyrSerValIleThrValLeuThrPr : 166 ||!.!!.!|||||| ! ||||||||| ||| :!! ! ! !||||||! ysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrAr 208589 : GCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCG : 208645 167 : oValIleMetGlnIleGlyAsnIleThrIleThrMetArgGlnLeuProCysProPhe : 185 !! !! :!: ! !..! !!.!:!:||| |||::!||| !! !||| !! gAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProVal 208646 : AGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTT : 208702 186 : TyrThrAspLeuValAspValArgTyrSerProAlaAsnGluIleValLeuGlyLeuG : 205 !! ! !:!!:!!||||||||||||||||||!.!||||||||| !!! ! !:!!| ProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValG 208703 : CCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTAC : 208762 206 : lnLeuMetSerThrValIleValAsnSerValThrValGlyAlaCysSerLeuAlaAl : 224 |||||:!!||| ! !!:!!!.!:!!!:!:!!|||||||||||||||.!!|||||||| lnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAl 208763 : AATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGC : 208819 225 : aValPheAlaMetHisAlaCysGlyGlnLeuAsnIleLeuMetIleLysLeuAspGlu : 243 |:!!.!!||||||||||||||||||||||||.!.||||||||| ! !:!!!!::!! aLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLys 208820 : GCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAG : 208876 244 : LeuValAspGlyThrGluGlyGluPheLysThrAsnHisArgLysLeuAlaValIleV : 263 |||||||||||| !|||! !||| |||!.! !!!:!!:!|||||| !|||| LeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleV 208877 : TTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCG : 208936 264 : alGluHisHisLeuArgValLeu{Se} >>>> Target Intron 1 >>>> {r : 271 |||||!!.|||:!!||||||:!!{!:} 1536 bp {! alGluGlnHisValArgValIle{As}++ ++{n 208937 : TGGAGCAGCATGTTCGAGTGATC{AA}gt.........................ag{T : 210498 272 : }PheValSerGlnIleGluAlaIleMetHisHisIleCysLeuIleGluLeuLeuGly : 290 }|||:!!:!!! !! !||| !:!!:!!|||.!.|||! |||||||||:!!:!!||| }PheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGluMetValGly 210499 : }TTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAATGGTGGGG : 210553 291 : CysThrIleAspIleCysMetLeuGlyTyrTyrThrIleMet >>>> Target In : 305 ||||||:!::!!!!:|||.!.|||||||||||||||!!:!!: 66 b CysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210554 : TGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt.............. : 210600 306 : tron 2 >>>> GluTrpGluLeuHisAspThrLysAsnLeuLeuThrTyrPheThr : 319 p ||||||!!:! ! ! ||| !!! !:! !|||||||||.!...! ++GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleVal 210601 : ...........agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTA : 210706 320 : IlePheIleSerMetSerCysAsnIlePheIlePheCysTyrIleAlaGluIleLeuT : 339 :!!.!!! !|||:!:!!!! !||||||||||||||||||||||||!.!|||:!:|||. LeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuA 210707 : CTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGG : 210766 340 : hrAspGln : 341 !!!!:||| laGluGln 210767 : CTGAACAg : 210774 vulgar: CbirOr16 12 341 . KQ414889.1 208185 210774 + 615 M 28 84 G 1 0 M 32 96 G 0 3 M 197 591 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 210774 615 + . gene_id 9 ; sequence CbirOr16 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208186 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208961 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208186 210774 615 + . alignment_id 9 ; Query CbirOr16 ; Align 208186 13 84 ; Align 208270 42 96 ; Align 208369 74 591 ; Align 210499 272 99 ; Align 210664 305 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 583 Query range: 19 -> 270 Target range: 256646 -> 257402 20 : SerGluTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProA : 39 |||!!:||||||:!!|||||||||||||||||||||||||||||||||||||||||| SerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpPro- 256647 : AGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCA- : 256704 40 : rgAlaGlyAlaSerIleSerIleMetAsnLysLeuLeuSerArgGlyIleGlnPheTh : 58 !!..!:!!|||! !!!!! !:!:.!.::! !:!!|||! !! !:!:.!..!!.. --ProSerSerSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleVa 256705 : --CCCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGT : 256758 59 : rCysHisSerLeuIleAlaSerThrValIleProCysIleLeuTyrIleLeuPheGlu : 77 !|||:!!.!!! !||| !! !|||:!!|||||||||:!:|||:!!:!!!!!.!!!!: lCysTyrGlySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAsp 256759 : CTGCTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGAC : 256815 78 : ProAsp<->ValTyrLeuLysLeuLysAlaPheGlyProMetIleHisTrpLeuMetG : 96 !||| !!|||:::|||:::||| ||||||||||||! !||||||:!!!!:. AspAspSerPheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleS 256816 : GACGACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCA : 256875 97 : lyGlyAlaAsnTyrCysSerLeuLeuSerSerSerHisLysIleArgLysCysValAs : 115 !! !!||||||||| ! !||||||! !..!.!! ! ! |||||| ! ||||||!! erCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGl 256876 : GCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGA : 256932 116 : pHisMetArgThrAspTrpGlnMetValGluArgMetSerAspArgGluValMetLeu : 134 :|||!!:..!|||||||||::!||||||..!||| !!.!|||!:!:!!||||||:!! uHisIleGluThrAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMet 256933 : GCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATG : 256989 135 : ArgAsnAlaArgPheGlyArgPheValSerThrPheCysAlaValPheMetGlnGlyG : 154 !:!||||||||||||||||||!:!|||:!!||||||||||||!.!.!!||||||.!!| LysAsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerG 256990 : AAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCG : 257049 155 : lyValCysSerTyrSerValIleThrValLeuThrProValIleMetGlnIleGlyAs : 173 ||||| ::: ||| :!!!.!|||!.! !!! !|||!!:!!.:!:||||| lyValPheCysPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAs 257050 : GCgttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAA : 257106 174 : nIleThrIleThrMetArgGlnLeuProCysProPheTyrThrAspLeuValAspVal : 192 | !|||! ! !:!!||| !|||||| ! !! ! |||! ! ! |||:!!:!!||| nGluThrThrIleValArgValLeuProValThrValTyrLysLysLeuLeuAsnVal 257107 : CGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTC : 257163 193 : ArgTyrSerProAlaAsnGluIleValLeuGlyLeuGlnLeuMetSerThrValIleV : 212 ! ! ||||||.!!||||||||||||:!! !:!!||| ! !|||:!!:!!|||! AspGlnSerProThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleA 257164 : GATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAG : 257223 213 : alAsnSerValThrValGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAlaCy : 231 .!!.!!!! !||||||.!! !! !|||||||||||||||||||||! ||||||! laThrThrSerThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTy 257224 : CGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTA : 257280 232 : sGlyGlnLeuAsnIleLeuMetIleLysLeuAspGluLeuValAspGlyThrGluGly : 250 !|||||||||!.!:!:|||||| !:!! |||!!!|||:!!! !:!!..!..! rGlyGlnLeuThrValLeuMetSerTrpIleThrGluPheValAsnGluSerArgAsn 257281 : CGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAAT : 257337 251 : GluPheLysThr<->AsnHisArgLysLeuAlaValIleValGluHisHisLeuArgV : 269 ... |||||| !!:!:!!:!!!.!||||||||||||||||||||||||| ArgGluLysThrPheProPheLysGlnIleGlyValIleValGluHisHisLeuArgV 257338 : CGggagaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAG : 257397 270 : alLeu : 270 ||||| alLeu 257398 : TGCTG : 257402 vulgar: CbirOr16 19 270 . KQ414889.1 256646 257402 + 583 M 19 57 G 1 0 M 40 120 G 0 3 M 175 525 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256647 257402 583 + . gene_id 10 ; sequence CbirOr16 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256647 257402 . + . KQ414889.1 exonerate:protein2genome:local exon 256647 257402 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 256647 257402 583 + . alignment_id 10 ; Query CbirOr16 ; Align 256647 20 57 ; Align 256704 40 120 ; Align 256827 80 525 ; Align 257355 255 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 560 Query range: 19 -> 270 Target range: 262843 -> 263599 20 : SerGluTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProA : 39 |||!!:||||||:!:|||:!!|||||||||.!.|||||||||||||||||||||||| SerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpPro- 262844 : AGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCA- : 262901 40 : rgAlaGlyAlaSerIleSerIleMetAsnLysLeuLeuSerArgGlyIleGlnPheTh : 58 !..!||||||||||||! !|||.!.::!:!!:!!!!! ! !:!! !!.. --LeuSerAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValVa 262902 : --CTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGT : 262955 59 : rCysHisSerLeuIleAlaSerThrValIleProCysIleLeuTyrIleLeuPheGlu : 77 !|||:!!!!!|||||| !|||||||||||||||! !||||||:!!|||:!!.!.||| lCysTyrCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGlu 262956 : CTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAA : 263012 78 : ProAsp<->ValTyrLeuLysLeuLysAlaPheGlyProMetIleHisTrpLeuMetG : 96 !!!!: !!:!!:!!||||||:!!!.!.!!||||||:!: !!!.|||!!!:!:| AlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValG 263013 : GCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCG : 263072 97 : lyGlyAlaAsnTyrCysSerLeuLeuSerSerSerHisLysIleArgLysCysValAs : 115 || ! !|||||| !!!!|||||| ! !||| ! ! |||!:! ||||||.! lyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGl 263073 : GTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCA : 263129 116 : pHisMetArgThrAspTrpGlnMetValGluArgMetSerAspArgGluValMetLeu : 134 .|||:!!!:! !|||||| !!:||| |||:!!..!|||!:!...:!!|||||| nHisValGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeu 263130 : ACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTG : 263186 135 : ArgAsnAlaArgPheGlyArgPheValSerThrPheCysAlaValPheMetGlnGlyG : 154 !:!||||||!:!!:!||||||!:!|||:!!.!!! !||||||:!!||||||||| !. LysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrS 263187 : AAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGA : 263246 155 : lyValCysSerTyrSerValIleThrValLeuThrProValIleMetGlnIleGlyAs : 173 !!:!! !!! ! !!!:!!:!!|||!.!!!!||| !! !:!:!!::!! !||||| erIleMetCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAs 263247 : GCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAA : 263303 174 : nIleThrIleThrMetArgGlnLeuProCysProPheTyrThrAspLeuValAspVal : 192 | |||! !! !:!:|||..!|||||||||||| ! |||! !!!::!!:!! ||| nGluThrArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProVal 263304 : CGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTC : 263360 193 : ArgTyrSerProAlaAsnGluIleValLeuGlyLeuGlnLeuMetSerThrValIleV : 212 ! !:!|||.!!||||||||| !!|||!.! !|||!!!:!!||| ! !!|||| AspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleV 263361 : GACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCG : 263420 213 : alAsnSerValThrValGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAlaCy : 231 ||!.!:!!..!||||||||||||! !.!!:!!.!!|||||||||||| |||||||| alThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCy 263421 : TCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTG : 263477 232 : sGlyGlnLeuAsnIleLeuMetIleLysLeuAspGluLeuValAspGlyThrGluGly : 250 |||||||||||||:!:|||||| ! !:!! |||!!!|||:!! !:!!..!! ! sGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAsp 263478 : CGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGAT : 263534 251 : GluPheLysThrAsnHis<->ArgLysLeuAlaValIleValGluHisHisLeuArgV : 269 ||| !|||!.! !:!! ! !:!!:!!!.!||||||||||||||||||||||||| GluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgV 263535 : GAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAG : 263594 270 : alLeu : 270 ||||| alLeu 263595 : TTCTG : 263599 vulgar: CbirOr16 19 270 . KQ414889.1 262843 263599 + 560 M 19 57 G 1 0 M 40 120 G 0 3 M 177 531 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262844 263599 560 + . gene_id 11 ; sequence CbirOr16 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262844 263599 . + . KQ414889.1 exonerate:protein2genome:local exon 262844 263599 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 262844 263599 560 + . alignment_id 11 ; Query CbirOr16 ; Align 262844 20 57 ; Align 262901 40 120 ; Align 263024 80 531 ; Align 263558 257 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 489 Query range: 11 -> 405 Target range: 303166 -> 305816 12 : ArgAsnValMetHisGlnGlnAspSerGluTyrSerIleGlnLeuAsnArgTrpPheL : 31 ||||||:!!! :!!:!!:!!|||! !! ||| !! !:!!! !!:!!:!|||.!!| ArgAsnLeuAsnTyrLysLysAspIleValTyrValThrLysHisSerLysTrpIleL 303167 : CGGAATTTGAATTACAAGAAAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCC : 303224 32 : euLysProIleGlyAlaTrpProArgAlaGlyAlaSerIleSerIleMetAsnLysLe : 50 ||||| !!:!!||| !|||||| !!.! !! !..!! !:!! !.!. ! euLysSerLeuGlyIleTrpProAlaValLeuAspGluThrAlaGlyPheLeuProLy 303225 : TGAAGTCCCTTGGTATTTGGCCAGCCGTGTTGGACGAAACCGCAGGATTCCTACCAAA : 303281 51 : uLeuSerArgGlyIleGlnPheThrCysHisSerLeuIleAlaSerThrValIlePro : 69 !:!!!!!! !|||:!!... :!!! !:!!:!! !! !|||||||||||| sIleThrIleGlyLeuSer---------AsnLeuValLeuLeuPheThrValIlePro 303282 : AATCACCATTGGACTCAGT---------AATTTGGTTCTATTATTCACCGTGATACCG : 303329 70 : CysIleLeuTyrIleLeuPheGlu<->ProAspValTyrLeuLysLeuLysAlaPheG : 88 |||||||||:!!|||:!!|||||| !|||..! :!!!:!|||||| !|||| CysIleLeuHisIleIlePheGluGlnLysAspThrIleIleArgLeuLysLeuPheG 303330 : TGTATTCTACACATAATATTCGAACAAAAGGATACGATAATAAGATTGAAACTATTCG : 303389 89 : lyProMetIleHisTrpLeuMetGlyGlyAlaAsnTyrCysSerLeuLeuSerSerSe : 107 ||! !:!!! ! !!! |||!!:..! ! !!!.|||!! :!!||| !!!! !!!. lyLeuLeuSerPheCysLeuIleSerLeuMetLysTyrTrpAlaLeuAlaThrArgLy 303390 : GTCTGCTGAGTTTCTGTTTGATCTCGTTGATGAAGTATTGGGCCCTCGCCACGCGGAA : 303446 108 : rHisLysIleArgLysCysVal{A} >>>> Target Intron 1 >>>> {sp} : 115 !! !:!|||!:!:!!|||:!!{!} 938 bp { } sProArgIleLysGluCysIle{G}-- ++{ly} 303447 : ACCAAGGATCAAAGAATGTATA{G}aa.........................ag{GG} : 304409 116 : HisMetArgThrAspTrpGlnMetValGluArgMetSerAspArgGluValMetLeuA : 135 !!:!: !|||! !:::!!..!|||||| !:!:!!!|||||||||:!!||||||! AspLeuSerThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuL 304410 : GATCTCTCTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAA : 304468 136 : rgAsnAlaArgPheGlyArgPheValSerThrPheCysAlaValPheMetGlnGlyGl : 154 :! !!!.!!:!.!.|||||| !:!!!!!! !.!!||||||:!!|||||| ! !|| ysTyrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGl 304469 : AATACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGG : 304525 155 : yValCysSerTyrSerValIleThrValLeuThrProValIleMetGlnIleGlyAsn : 173 |! ! !! !||| !..!:!!! ! !!!!.!! ..! !! ! ! :!:! !.!. yGlyThrIleTyrHisThrValMetGlnPheAla---ThrGlyThrTyrValAspGlu 304526 : CGGCACCATTTATCACACGGTCATGCAGTTCGCG---ACCGGAACGTATGTGGATGAG : 304579 174 : IleThrIleThrMetArgGlnLeuProCysProPheTyrThrAspLeuValAspValA : 193 !!.! !|||!!:!:!! !||| !! !||| !|||!:!! !||| !!||||||! TyrAsnArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValG 304580 : TATAATCGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTC : 304639 194 : rgTyrSerProAlaAsnGluIleValLeuGlyLeuGlnLeuMetSerThrValIleVa : 212 :! |||||| ! !!|||:!:|||! ! !:!!!!.! !|||!!! ! !:!!:! lnThrSerProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIl 304640 : AAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAAT : 304696 213 : lAsnSerValThrValGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAlaCys : 231 ! !!|||:!!|||!.!|||||||||.!!|||||||||:!!||||||! ||||||||| eTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCys 304697 : TTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGT : 304753 232 : GlyGlnLeuAsnIleLeuMetIleLysLeuAspGluLeuValAspGlyThrGluGlyG : 251 ||||||:!!:!!|||:!!||| !::!|||! !!!:||||||:!!.!!! !|||..! GlyGlnIleAspIleValMetSerArgLeuGlyAspLeuValAsnSerLysGluSer- 304754 : GGACAAATTGATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCA- : 304813 252 : luPheLysThrAsnHisArgLysLeuAlaValIleValGluHisHisLeuArgValLe : 270 ... ! !!!:!::!||| !! !|||||||||||||||||||||:!!|| -----SerAspLeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIleLe 304814 : -----TCTGATTTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTT : 304864 271 : u{Se} >>>> Target Intron 2 >>>> {r}PheValSerGlnIleGluAla : 278 |{||} 138 bp {|} !:!!||| ! ! ! u{Se}++ +-{r}AspMetSerThr***IleLeu 304865 : A{AG}gt.........................ac{T}GATATGTCTACTTGAATACTA : 305026 279 : IleMetHisHisIleCysLeuIleGluLeuLeuGlyCysThrIleAspIleCysMetL : 298 :!: :!! ! |||!!!||| !!! ! !!! ||| !!:.!!! :::| LeuTyrAsnGlyAlaCysPheIleThrPheAsp***TrpThr***GluPheLeuValL 305027 : CTGTATAACGGTGCGTGTTTTATAACTTTTGACTAATGGACTTAGGAGTTCTTGgttt : 305086 299 : euGlyTyrTyrThrIleMetGluTrpGluLeuHisAspThrLysAsnLeuLeuThrTy : 317 || ||| ..!!!:|||||| ! !:!!||| !:!||| !||||| eu------TyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrThrTy 305087 : ta------tatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATA : 305137 318 : rPheThrIlePheIleSerMetSerCysAsnIlePheIlePheCysTyrIleAlaGlu : 336 | ..!:!!.!.||||||:!:!!!! !||||||||||||!!.|||||||||!.!||| rThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGlu 305138 : TACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAG : 305194 337 : IleLeuThrAspGln >>>> Target Intron 3 >>>> CysGlnLysValGl : 346 ||||||! !!!::!! 413 bp !!...!..||||| IleLeuMetGluLys++ ++SerSerSerValGl 305195 : ATTCTTATGGAAAAGgt.........................agAGCAGTAGCGTTGG : 305637 347 : yGluMetValTyrMetThrGluTrpTyrArgLeuHisHisLysThrAlaHisAspLeu : 365 | ! !!:!|||! !...||||||!.!|||! !|||||| !|||! !||| yLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeu 305638 : ATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTT : 305694 366 : IleLeuIleIleSerArgSerAsnThrValIleLysIleThrAlaGlyLysMetIleG : 385 ||||||||||||:!!! !|||!:!!.! ! !||||||!:!|||||||||:!::!!. IleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysValValA 305695 : ATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTG : 305754 386 : lnLeuSerIleAlaThrPheGlyAspValMetLysThrAlaPheAlaTyrLeuAsnIl : 404 !.||||||:!!:!!|||||||||:!!|||! ! ! :::::: ::::::|| spLeuSerLeuSerThrPheGlyAsnValSerTyrTyrGlnTyrSerAsnIleSerIl 305755 : ATTTATCTTTATCCACATTTGGAAACGTGAGTTACTATcaatattccaatatttcaat : 305811 405 : eLeu : 405 |::: eVal 305812 : tgtt : 305816 vulgar: CbirOr16 11 405 . KQ414889.1 303166 305816 + 489 M 45 135 G 3 0 M 18 54 G 0 3 M 37 111 S 0 1 5 0 2 I 0 934 3 0 2 S 1 2 M 50 150 G 1 0 M 84 252 G 2 0 M 18 54 S 0 2 5 0 2 I 0 134 3 0 2 S 1 1 M 27 81 G 2 0 M 41 123 5 0 2 I 0 409 3 0 2 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303167 305816 489 + . gene_id 12 ; sequence CbirOr16 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303167 303470 . + . KQ414889.1 exonerate:protein2genome:local exon 303167 303470 . + . insertions 3 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 303471 303472 . + . intron_id 1 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local intron 303471 304408 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304407 304408 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304409 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304409 304868 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 305006 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 305005 305006 . + . intron_id 1 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 305007 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305007 305211 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305816 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305816 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303167 305816 489 + . alignment_id 12 ; Query CbirOr16 ; Align 303167 12 135 ; Align 303302 60 54 ; Align 303359 78 111 ; Align 304411 116 150 ; Align 304561 167 252 ; Align 304813 253 54 ; Align 305008 272 81 ; Align 305089 301 123 ; Align 305625 342 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 474 Query range: 15 -> 273 Target range: 212854 -> 213628 16 : HisGlnGlnAspSerGluTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleG : 35 :!!:!!:!! ... |||||| !! !|||||||||.!!|||||||||! | TyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrG 212855 : TACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGG : 212912 36 : lyAlaTrpProArgAlaGlyAlaSerIleSerIleMetAsnLysLeuLeuSerArgGl : 54 || !|||||| ! ! :!!! !:!!||| !!:.!.||| !:!!:!!||| lyLeuTrpProAspLys---SerTyrValSerProIleGluLysAsnIleAlaArgLe 212913 : GTTTGTGGCCCGACAAG---TCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATT : 212966 55 : yIleGlnPheThrCysHisSerLeuIleAlaSerThrValIleProCysIleLeuTyr : 73 !:!!.!. !..!|||:!!.!!||||||!.!! ! !||||||||||||! !|||||| uValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyr 212967 : GGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTAC : 213023 74 : IleLeuPheGlu<->ProAspValTyrLeuLysLeuLysAlaPheGlyProMetIleH : 92 :!:!!!.!!!!: ::::::::: ::::!!:!! !|||||| !.!. ! ValPheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheAlaP 213024 : GTGTTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTGCAT : 213083 93 : isTrpLeuMetGlyGlyAlaAsnTyrCysSerLeuLeuSerSerSerHisLysIleAr : 111 !!! :!! !.! ! !!!.||| !||||||:!! ! !.!! !! ! ||||| heCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleAr 213084 : TTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCG : 213140 112 : gLysCysValAspHisMetArgThrAspTrpGlnMetValGluArgMetSerAspArg : 130 |! !||||||!!:||||||!:! !||||||:!!! :!! !!.! !..!|||!:! gThrCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLys 213141 : TACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAA : 213197 131 : GluValMetLeuArgAsnAlaArgPheGlyArgPheValSerThrPheCysAlaValP : 150 |||:!!||| ! !||||||!!!||||||!:! :!! !|||.!!|||||| !!| GluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPheP 213198 : GAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCT : 213257 151 : heMetGlnGlyGlyValCysSerTyrSerValIleThrValLeuThrProValIleMe : 169 ||||| ! !||| !! ! !|||! !:!!:!!..! !:!!!:! !!! !! !|| heMetTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLysMe 213258 : TCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAAT : 213314 170 : tGlnIleGlyAsnIleThrIleThrMetArgGlnLeuProCysProPheTyrThrAsp : 188 | ! ! !:!!:!!!.!:!:|||.!.||||||:!! ! !||| !!! ! ! ! tValAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSerArgPhe 213315 : GGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTT : 213371 189 : LeuValAspValArgTyrSerProAlaAsnGluIleValLeuGlyLeuGlnLeuMetS : 208 :!!|||||||||||||||||||||!.!||||||||| !!!!! !:!!|||:!!!!:: IleValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleIleA 213372 : ATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAG : 213431 209 : erThrValIleValAsnSerValThrValGlyAlaCysSerLeuAlaAlaValPheAl : 227 !! !|||:!::!!:!!:!!:!!.!!|||! !|||||||||||||||||||||||||| laGlyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPheAl 213432 : CTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGC : 213488 228 : aMetHisAlaCysGlyGlnLeuAsnIleLeuMetIleLysLeuAspGluLeuValAsp : 246 |:!:|||||||||||||||:!!..!|||||||||! ! !|||!!:.!.|||:!!||| aValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAsp 213489 : GGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGAC : 213545 247 : GlyThrGluGlyGluPheLysThrAsnHisArgLysLeuAlaValIleValGluHisH : 266 |||! !|||! ! ! !|||!.! !! !!:!:!!||||||||||||.!.!!.| GlyArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleValAsnGlnH 213546 : GGTAGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGC : 213605 267 : isLeuArgValLeuSerPheVal : 273 ||:!!|||:!!|||!.!!::||| isValArgIleLeuLysTrpVal 213606 : ATGTGCGGATACTGAAGTGGGTG : 213628 vulgar: CbirOr16 15 273 . KQ414889.1 212854 213628 + 474 M 25 75 G 1 0 M 36 108 G 0 3 M 196 588 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212855 213628 474 + . gene_id 13 ; sequence CbirOr16 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212855 213628 . + . KQ414889.1 exonerate:protein2genome:local exon 212855 213628 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212855 213628 474 + . alignment_id 13 ; Query CbirOr16 ; Align 212855 16 75 ; Align 212930 42 108 ; Align 213041 78 588 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 466 Query range: 15 -> 273 Target range: 221360 -> 222134 16 : HisGlnGlnAspSerGluTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleG : 35 :!!:!! !:!! !:!!! |||:!:||||||!:!||||||.!!||||||||||||| TyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleG 221361 : TACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCG : 221418 36 : lyAlaTrpProArgAlaGlyAlaSerIleSerIleMetAsnLysLeuLeuSerArgGl : 54 ||!.!||||||!.!:!! |||!:!||||||! :!:.!.!:!! !|||! ! !! lyValTrpProAsnSer---AlaAsnIleSerThrValGluArgTyrLeuTyrTrpLe 221419 : GTGTTTGGCCAAATTCA---GCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 55 : yIleGlnPheThrCysHisSerLeuIleAlaSerThrValIleProCysIleLeuTyr : 73 !|||.!. !!..!|||:!!|||||||||.!!! ! !:!!:!!||||||! !|||||| uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 74 : IleLeuPheGlu<->ProAspValTyrLeuLysLeuLysAlaPheGlyProMetIleH : 92 :!::!!.!!||| !||||||||| !!:!:!!||| !!!.||||||:!!! ! ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 93 : isTrpLeuMetGlyGlyAlaAsnTyrCysSerLeuLeuSerSerSerHisLysIleAr : 111 !!! :!!|||!.! ! !!!.||| ! !|||:!! !! !..!:!! ! ||||| heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 112 : gLysCysValAspHisMetArgThrAspTrpGlnMetValGluArgMetSerAspArg : 130 |:!!|||:!!!!:!.!!!:..! !||||||:!!! :!! ! !.!|||!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 131 : GluValMetLeuArgAsnAlaArgPheGlyArgPheValSerThrPheCysAlaValP : 150 !!::!!|||:!!..!||||||! !||||||||| :!!! !! !.!!|||.!! !!| AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 151 : heMetGlnGlyGlyValCysSerTyrSerValIleThrValLeuThrProValIleMe : 169 ||||| ! .!!||| ||| ::! !! ! !!!!!:! !! !! !!! heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 170 : tGlnIleGlyAsnIleThrIleThrMetArgGlnLeuProCysProPheTyrThrAsp : 188 :! !:!!:::...:::|||... ! !:!! !! !||||||! ! ! ! eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 189 : LeuValAspValArgTyrSerProAlaAsnGluIleValLeuGlyLeuGlnLeuMetS : 208 :!!||||||..!||||||||||||!.!|||||||||:!!!!!..!||||||:!!|||: IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 209 : erThrValIleValAsnSerValThrValGlyAlaCysSerLeuAlaAlaValPheAl : 227 !! !!.!:!::!!:!!|||:!!||| !!.!||||||||||||!.!|||:!!||||| laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 228 : aMetHisAlaCysGlyGlnLeuAsnIleLeuMetIleLysLeuAspGluLeuValAsp : 246 |:!!|||||||||||||||:!!.!.:!:||||||! ! !||| ! .!.|||:!!:!! aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 247 : GlyThrGluGlyGluPheLysThrAsnHisArgLysLeuAlaValIleValGluHisH : 266 ||| !! !! ! !! !!!.!.! !!|||!:!:!!||| !||||||.!.!!.| GlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnH 222052 : GGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAAC : 222111 267 : isLeuArgValLeuSerPheVal : 273 ||:!!|||:!!|||..!!:!||| isValArgIleLeuGlnTyrVal 222112 : ACGTTCGAATATTGCAGTATGTA : 222134 vulgar: CbirOr16 15 273 . KQ414889.1 221360 222134 + 466 M 25 75 G 1 0 M 36 108 G 0 3 M 196 588 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221361 222134 466 + . gene_id 14 ; sequence CbirOr16 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221361 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221361 222134 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221361 222134 466 + . alignment_id 14 ; Query CbirOr16 ; Align 221361 16 75 ; Align 221436 42 108 ; Align 221547 78 588 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 419 Query range: 18 -> 280 Target range: 236843 -> 237626 19 : AspSerGluTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpP : 38 ..!|||!!:||||||:!!|||! !||||||||| :!!||| !||||||.!!|||| SerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpP 236844 : AGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGC : 236901 39 : roArgAlaGlyAlaSerIleSerIleMetAsnLysLeuLeuSerArgGlyIleGlnPh : 57 ||!:! !..!:!!!:! :!:.!.!:! !:!!|||||| !:!!.!. ! roGlnPheSerSerAsn---------LeuGluArgAsnIleSerArgIleLeuAsnVa 236902 : CACAGTTCTCGTCGAAC---------CTCGAGAGAAACATCTCTCGAATATTAAACGT : 236949 58 : eThrCysHisSerLeuIleAlaSerThrValIleProCysIleLeuTyrIleLeuPhe : 76 ! !|||:!!!!! !||| !! !:!!:!!||||||||| |||:!!:!!:!!.!. lIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeu 236950 : GATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTG : 237006 77 : GluProAspVal<->TyrLeuLysLeuLysAlaPheGlyProMetIleHisTrpLeuM : 95 ||| !! ..! ||| !|||:!!||| !.!!||| !!:!!! !||||||:!!. GluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValP 237007 : GAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGT : 237066 96 : etGlyGlyAlaAsnTyrCysSerLeuLeuSerSerSerHisLysIleArgLysCysVa : 114 !. !! ! !!:!||| !! !|||||| ! !! !! ! ! |||||| ! ! ! ! heCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePh 237067 : TCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTT : 237123 115 : lAspHisMetArgThrAspTrpGlnMetValGluArgMetSerAspArgGluValMet : 133 !:!!||||||..!|||||||||::!! !..! ||| ... :::||||||||| eAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMet 237124 : CAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATG : 237180 134 : LeuArgAsnAlaArgPheGlyArgPheValSerThrPheCysAlaValPheMetGlnG : 153 |||!:! !!|||!:!|||.!!|||!:!!.!:!!! !! !|||.!!:!!|||!!:!!.| LeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisG 237181 : TTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACG : 237240 154 : lyGlyValCysSerTyrSerValIleThrValLeuThrProValIleMetGlnIleGl : 172 |||||:!! !.!!|||!!!|||!!:|||!.!! !||| !!:!!:!!:!: !:!!|| lyGlyIleLeuGlyTyrCysValMetThrAlaSerThrThrMetValValValValGl 237241 : GTGGTATACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGG : 237297 173 : yAsnIleThrIleThrMetArgGlnLeuProCysProPheTyrThrAspLeuValAsp : 191 ||||! |||! ! !:!!||| !||||||! |||.!.|||! !! |||:!! yAsnLysThrThrIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuPro 237298 : AAACAAGACTACGATCTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCA : 237354 192 : ValArgTyrSerProAlaAsnGluIleValLeuGlyLeuGlnLeuMetSerThrValI : 211 ||| ! !:! !! !|||!!:||||||:!! !! !|||!!!:!:||| ! !!| ValAspThrAsnThrMetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheI 237355 : GTCGATACGAATACTATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTA : 237414 212 : leValAsnSerValThrValGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAl : 230 ||!.!|||!:! !.!!:!!.!!!.! ||||||.!!::!!.!.!..!! ||||| leAlaAsnAsnSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAl 237415 : TAGCGAACAACAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGC : 237471 231 : aCysGlyGlnLeuAsnIleLeuMetIleLysLeuAspGluLeuValAspGlyThrGlu : 249 |! !|||||||||!:!:!::!!|||:!:..!:!!!!:!!:!!!|||..!! !.!!..! aSerGlyGlnLeuSerValValMetLeuSerIleGluAspPheValSerGluAlaArg 237472 : GTCTGGCCAGTTGAGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGA : 237528 250 : GlyGluPheLysThrAsnHis<->ArgLysLeuAlaValIleValGluHisHisLeuA : 268 !!..! ||| !:!!||| !:!!:!! !!..!|||||||||.!.||||||| ArgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluGluHisLeuA 237529 : CGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGA : 237588 269 : rgValLeuSerPheValSerGlnIleGluAlaIleMet : 280 ||||||||!.!! |||!!! !:!:!!: !|||:!! rgValLeuLys***ValCysLeuLeuAspLeuIleLeu 237589 : GAGTGTTGAAGTAAGTATGTTTGTTGGATTTGATTTTG : 237626 vulgar: CbirOr16 18 280 . KQ414889.1 236843 237626 + 419 M 25 75 G 3 0 M 34 102 G 0 3 M 176 528 G 0 3 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236844 237626 419 + . gene_id 15 ; sequence CbirOr16 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236844 237626 . + . KQ414889.1 exonerate:protein2genome:local exon 236844 237626 . + . insertions 6 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 236844 237626 419 + . alignment_id 15 ; Query CbirOr16 ; Align 236844 19 75 ; Align 236919 47 102 ; Align 237024 81 528 ; Align 237555 257 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 409 Query range: 270 -> 409 Target range: 257478 -> 258738 271 : SerPheValSerGlnIleGluAlaIleMetHisHisIleCysLeuIleGluLeuLeuG : 290 ||||||:!!||| ! ||||||! !:!:|||:!!!..||||||!!!:!!||||||!!! SerPheIleSerTyrIleGluGluValMetAsnArgIleCysPheLeuGluLeuPheA 257479 : AGTTTCATATCATATATCGAGGAAGTGATGAACCGAATATGTTTTTTAGAGTTGTTTA : 257536 291 : lyCysThrIleAspIleCysMetLeuGlyTyrTyrThrIleMet >>>> Target : 305 !!||||||:!:! !|||||||||||||||||||||! !:!! ! 68 rgCysThrLeuAlaIleCysMetLeuGlyTyrTyrIleLeuAla++ 257537 : GATGCACGCTGGCTATATGCATGCTGGGATACTACATTCTTGCGgt............ : 257583 306 : Intron 1 >>>> GluTrpGluLeuHisAspThrLysAsnLeuLeuThrTyrPheT : 319 4 bp ||||||... !!..||| :::|||||| :::||||||! ++GluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheM 257584 : .............aggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTA : 258307 320 : hrIlePheIleSerMetSerCysAsnIlePheIlePheCysTyrIleAlaGluIleLe : 338 !|||.!!||||||:::||| |||||||||:::...|||||||||!.!|||||||| etIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLe 258308 : TGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATT : 258364 339 : uThrAspGln >>>> Target Intron 2 >>>> CysGlnLysValGlyGluM : 348 ||||!!:||| 90 bp |||:!!|||||||||!!:: uThrGluGln++ ++CysLysLysValGlyAspV 258365 : AACAGAACAGgt.........................agTGCAAGAAAGTTGGCGACG : 258484 349 : etValTyrMetThrGluTrpTyrArgLeuHisHisLysThrAlaHisAspLeuIleLe : 367 !!||||||||||||!!:|||||| !|||! ! !!|||! ! !! !||||||||||| alValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLe 258485 : TGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTT : 258541 368 : uIleIleSerArgSerAsnThrValIleLysIleThrAlaGlyLysMetIleGlnLeu : 386 |:!!|||:!!||||||!:!..!|||:!!:!!|||||||||||||||.........::! uValIleAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePheHisMet 258542 : GGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatG : 258598 387 : SerIleAlaThrPheGlyAsp >>>> Target Intron 3 >>>> ValMetLy : 396 |||||| !||||||.!!||| 69 bp |||!!:|| SerIleTyrThrPheSerAsp++ ++ValIleLy 258599 : TCCATTTACACATTCAGCGATgt.........................agGTAATAAA : 258697 397 : sThrAlaPheAlaTyrLeuAsnIleLeuArgThrValAla : 409 ||||:!!|||||||||||||||:!!|||||| !|||:!! sThrSerPheAlaTyrLeuAsnLeuLeuArgGlnValSer 258698 : AACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGTATCG : 258738 vulgar: CbirOr16 270 409 . KQ414889.1 257478 258738 + 409 M 34 102 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 257479 258738 409 + . gene_id 16 ; sequence CbirOr16 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 257479 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257479 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 257479 258738 409 + . alignment_id 16 ; Query CbirOr16 ; Align 257479 271 102 ; Align 258265 305 111 ; Align 258466 342 156 ; Align 258691 394 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 362 Query range: 176 -> 408 Target range: 300195 -> 302160 177 : ThrMetArgGlnLeuProCysProPheTyrThrAspLeuValAspValArgTyrSerP : 196 ||| !:!! !||| !!! !||| !||| ! !!!:!!|||..!!:! !|||| ThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnThrSerP 300196 : ACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAACCAGTC : 300253 197 : roAlaAsnGluIleValLeuGlyLeuGlnLeuMetSerThrValIleValAsnSerVa : 215 ||.!! !!|||||||||... ...... .!.:!!.!!:!!|||:!! !!!:!|| roThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTyrAsnVa 300254 : CTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTACAACGT : 300310 216 : lThrValGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAlaCysGlyGlnLeu : 234 ||||..!!.!|||! !||||||||||||:!!|||!.!! ||| !|||||||||:!! lThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGlyGlnIle 300311 : GACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGACAGATT : 300367 235 : AsnIleLeuMetIleLysLeuAspGluLeuValAspGlyThrGluGlyGluPheLysT : 254 .!.|||! !||| !:!|||!!:!!:||||||!!: !!||| |||||| ! GlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThr---GlyGluLysAspA 300368 : CAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACG---GGAGAGAAGGACG : 300424 255 : hrAsnHisArgLysLeuAlaValIleValGluHisHisLeuArgValLeu{Se} >> : 271 !..!! ! ! |||!.!|||||||||..! !!|||:!!!:!||||||{!!} spGlyProAspProLeuValValIleValArgAspHisValLysValLeu{Ar}++ 300425 : ACGGTCCTGATCCTTTGGTCGTTATCGTTCGAGATCACGTGAAGGTTTTA{AG}gt.. : 300479 272 : >> Target Intron 1 >>>> {r}PheValSerGlnIleGluAlaIleMetHis : 281 1110 bp {!} ! !!!!....!!... ! !! ! ++{g}AspProCysSerPheArg***ProThrPhe 300480 : .......................ag{A}GACCCGTGTTCCTTCCGTTAGCCAACTTTT : 301615 282 : HisIleCysLeuIleGluLeuLeuGlyCysThrIleAspIleCysMetLeuGlyTyrT : 301 |||:!!||| ::: ... |||:!!:!! ! .!.||| !! HisLeuCysAlaValIleLysPheGluSerThrLeuAsnAlaLysPheLeuArgValI 301616 : CATCTCTGCgctgtaattaaatttgaatctACTTTAAATGCAAAGTTTTTACGAGTAA : 301675 302 : yrThrIleMetGluTrpGluLeuHisAspThrLysAsnLeuLeuThrTyrPheThrIl : 320 ! !.!! !||||||:!! ! !||||||! !:!!||||||!:!||||||:! le***Phe***GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLe 301676 : TTTGATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCT : 301732 321 : ePheIleSerMetSerCysAsnIlePheIlePheCysTyrIleAlaGluIleLeuThr : 339 :!!.! |||.!.!!!! !||||||||||||||||||||||||!.!|||||||||:!! uLeuThrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSer 301733 : GTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCC : 301789 340 : AspGln >>>> Target Intron 2 >>>> CysGlnLysValGlyGluMetVa : 349 !!:||| 80 bp |||...:!!:!!|||..! GluGln++ ++CysSerGlnIleGlySerAlaSe 301790 : GAACAGgt.........................agTGTAGCCAAATTGGTTCAGCATC : 301899 350 : lTyrMetThrGluTrpTyrArgLeuHisHisLysThrAlaHisAspLeuIleLeuIle : 368 !||| !! !!!:||||||!.!|||! |||! !|||:!!||||||||||||:!! rTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeu 301900 : GTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTT : 301956 369 : IleSerArgSerAsnThrValIleLysIleThrAlaGlyLysMetIleGlnLeuSerI : 388 ! ! !! !|||.!. ! ! |||:!!||||||||||||!!:|||.!.||||||: SerValIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerL 301957 : AGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCT : 302016 389 : leAlaThrPheGlyAsp >>>> Target Intron 3 >>>> ValMetLysThr : 397 !: !||||||.!!..! 82 bp |||:!!|||||| euAsnThrPheSerSer++ ++ValValLysThr 302017 : TGAATACATTCAGCTCTgt.........................agGTGGTGAAAACA : 302125 398 : AlaPheAlaTyrLeuAsnIleLeuArgThrVal : 408 :!! ! !.!|||||||||:!!|||||||||||| SerValValTyrLeuAsnLeuLeuArgThrVal 302126 : TCGGTGGTGTACTTGAATTTACTGCGAACAGTT : 302160 vulgar: CbirOr16 176 408 . KQ414889.1 300195 302160 + 362 M 72 216 G 1 0 M 21 63 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 70 210 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300196 302160 362 + . gene_id 17 ; sequence CbirOr16 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300196 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300196 300476 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302160 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302160 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300196 302160 362 + . alignment_id 17 ; Query CbirOr16 ; Align 300196 177 216 ; Align 300412 250 63 ; Align 301588 272 210 ; Align 301878 342 156 ; Align 302116 394 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 311 Query range: 0 -> 270 Target range: 289672 -> 290479 1 : MetSerGlnProLeuPheGlyAlaValValThrArgAsnValMetHisGlnGlnAspS : 20 :!:|||..!! !! !|||.!!::!! ! ! !! !|||! ! :!!:!! !|||! ValSerMetArgSerPheSerSerAspArgProSerAsnAspArgTyrGluThrAspI 289673 : GTCAGCATGCGATCGTTCAGCAGCGATCGTCCGTCGAACGATCGTTACGAAACGGACA : 289730 21 : erGluTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProAr : 39 !...|||!!!.!!:!!||| !!.!|||.!!||||||||||||||| !!::||| leArgTyrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrProPh 289731 : TACGTTACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTT : 289787 40 : gAlaGlyAlaSerIleSerIleMetAsnLysLeuLeuSerArgGlyIleGlnPheThr : 58 !!.! !::! !! |||! ! .!.::! ! !||| ! !:!: .!...! eValPheSerArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLeuVal 289788 : CGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTA : 289844 59 : CysHisSerLeuIleAlaSerThrValIleProCysIleLeuTyrIleLeuPhe<->G : 77 ||| !|||:!!:!! !! !! !:!!:!!|||! !! !! !:!!:!!|||||| ! CysCysSerIleLeuGlnPheIleIleValProPheSerHisHisValLeuPheSerA 289845 : TGTTGCTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCG : 289904 78 : luProAspValTyrLeuLysLeuLysAlaPheGlyProMetIleHisTrpLeuMetGl : 96 !: !|||:!! !! ! :!!||| !.!!||||||:!!! !!! |||! spAsnAspMetAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuThrTh 289905 : ACAACGACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCAC : 289961 97 : yGlyAlaAsnTyrCysSerLeuLeuSerSerSerHisLysIleArgLysCysValAsp : 115 ! ! !!!.||||||! !!!! !! !!.!.!! !||| !!:::|||||| ! rPhePheLysTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysValLys 289962 : GTTCTTCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAA : 290018 116 : HisMetArgThrAspTrpGlnMetValGluArgMetSerAspArgGluValMetLeuA : 135 |||!!:..!! !||||||:!!|||:!!... ! !..! !!|||! :!!||||||| HisIleGluArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMetLeuA 290019 : CACATCGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCA : 290078 136 : rgAsnAlaArgPheGlyArgPheValSerThrPheCysAlaValPheMetGlnGlyGl : 154 || !!!.!! !.!..!!||| !:!!! !! !.!.||||||:!!|||:!! ! !|| rgTyrValThrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGl 290079 : GATACGTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGG : 290135 155 : yValCysSerTyrSerValIleThrValLeuThrProValIleMetGlnIleGlyAsn : 173 |! ! ||||||!:!..!:!!! ! !||| ! !! !! ! !! !|||||| yGlyLeuSerTyrAsnThrValIleProLeuPheSerLysLysSerValAsnGlyAsn 290136 : TGGTCTGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGGTAAC : 290192 174 : IleThrIleThrMetArgGlnLeuProCysProPheTyrThrAspLeuValAspValA : 193 :!:|||||| |||! ||| !!! !||| !||| !!!:!!! !!||||||! ValThrIle------ArgProLeuThrTyrProGlyTyrGluGluPhePheAspValG 290193 : GTGACTATC------AGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTC : 290246 194 : rgTyrSerProAlaAsnGluIleValLeuGlyLeuGlnLeuMetSerThrValIleVa : 212 :! ! ||||||||| !!|||||||||!!! !!:!!!!.! !:!:! !..!:!!|||.. lnLysSerProAlaTyrGluIleValPheCysMetHisCysValTyrValMetIleTh 290247 : AGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCAC : 290303 213 : lAsnSerValThrValGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAlaCys : 231 ! !:!:!!|||:!!!.!|||! !||||||.!!.!!:!!||||||! |||.!!||| rAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCys 290304 : GGCGAACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGC : 290360 232 : GlyGlnLeuAsnIleLeuMetIleLysLeuAspGluLeuValAspGlyThrGluGlyG : 251 ||||||:!!!!.|||! !! !! ::!|||!!:!!:|||..! ! !! ! ! ! GlyGlnIleLysIleGlnThrThrArgLeuGluAspLeuThrLysArgGlyMetLeuL 290361 : GGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTGACAAAGAGAGGGATGCTGT : 290420 252 : luPheLysThrAsnHisArgLysLeuAlaValIleValGluHisHisLeuArgValLe : 270 ! ||| ! ! !:::|||||||||:!!|||... !|||:!!..!:!!|| euGluLysGlyValSerAspArgLeuAlaValValValSerGlyHisValGluIleLe 290421 : TGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTGTGAGCGGTCACGTGGAGATCTT : 290477 271 : u : 270 | u 290478 : G : 290479 vulgar: CbirOr16 0 270 . KQ414889.1 289672 290479 + 311 M 76 228 G 0 3 M 100 300 G 2 0 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289673 290479 311 + . gene_id 18 ; sequence CbirOr16 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289673 290479 . + . KQ414889.1 exonerate:protein2genome:local exon 289673 290479 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289673 290479 311 + . alignment_id 18 ; Query CbirOr16 ; Align 289673 1 228 ; Align 289904 77 300 ; Align 290204 179 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 305 Query range: 304 -> 406 Target range: 272836 -> 273293 305 : GluTrpGluLeuHisAspThrLysAsnLeuLeuThrTyrPheThrIlePheIleSerM : 324 |||||| !|||||| !:!!!:!||| !|||||||||! !|||.!!||||||| GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 325 : etSerCysAsnIlePheIlePheCysTyrIleAlaGluIleLeuThrAspGln >>> : 342 ||::: |||||||||||| |||||||||!.!||||||||||||!!:::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 343 : > Target Intron 1 >>>> CysGlnLysValGlyGluMetValTyrMetThrG : 353 70 bp |||:::|||:::||||||:!:||||||||||||. ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 354 : luTrpTyrArgLeuHisHisLysThrAlaHisAspLeuIleLeuIleIleSerArgSe : 372 !.|||||| !|||! ! !||| ! !! !||||||||||||||||||||||||!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 373 : rAsnThrValIleLysIleThrAlaGlyLysMetIleGlnLeuSerIleAlaThrPhe : 391 !!:!..!|||||||||||||||||||||!:!!!::!!! :!!|||:!: !|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 392 : GlyAsp >>>> Target Intron 2 >>>> ValMetLysThrAlaPheAlaTy : 401 |||||| 81 bp |||||||||!:!||||||||||| GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 402 : rLeuAsnIleLeuArg : 406 |||||||!!:|||||| rLeuAsnMetLeuArg 273277 : CTTAAATATGCTACGA : 273293 vulgar: CbirOr16 304 406 . KQ414889.1 272836 273293 + 305 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273293 305 + . gene_id 19 ; sequence CbirOr16 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273293 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273293 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273293 305 + . alignment_id 19 ; Query CbirOr16 ; Align 272837 305 111 ; Align 273018 342 156 ; Align 273255 394 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 218 Query range: 340 -> 405 Target range: 254271 -> 254555 341 : GlnCysGlnLysValGlyGluMetValTyrMetThrGluTrpTyrArgLeuHisHisL : 360 |||||| !||||||||||||:!!||||||||||||!!:|||||| !|||! !!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 361 : ysThrAlaHisAspLeuIleLeuIleIleSerArgSerAsnThrValIleLysIleTh : 379 :!! ! !! !||||||||||||||||||!!!|||||||||..!|||:!!:!!||||| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 380 : rAlaGlyLysMetIleGlnLeuSerIleAlaThrPheGlyAsp >>>> Target I : 394 ||||||||||:::......:::|||:!! !|||||||||||| 89 rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt............. : 254433 395 : ntron 1 >>>> ValMetLysThrAlaPheAlaTyrLeuAsnIleLeu : 405 bp |||:!:||||||!.!|||||||||||||||!!:||| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeu 254434 : ............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTT : 254555 vulgar: CbirOr16 340 405 . KQ414889.1 254271 254555 + 218 M 53 159 5 0 2 I 0 85 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254555 218 + . gene_id 20 ; sequence CbirOr16 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254272 254430 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254430 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254431 254432 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254431 254519 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254518 254519 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254520 254555 . + . KQ414889.1 exonerate:protein2genome:local exon 254520 254555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254555 218 + . alignment_id 20 ; Query CbirOr16 ; Align 254272 341 159 ; Align 254520 394 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 217 Query range: 340 -> 405 Target range: 244655 -> 244939 341 : GlnCysGlnLysValGlyGluMetValTyrMetThrGluTrpTyrArgLeuHisHisL : 360 |||||| !||||||||||||:!!||||||||||||!!:|||||| !|||! !!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 361 : ysThrAlaHisAspLeuIleLeuIleIleSerArgSerAsnThrValIleLysIleTh : 379 :!! ! !! !||||||||||||||||||!.!|||||||||! !|||:!!:!!||||| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 380 : rAlaGlyLysMetIleGlnLeuSerIleAlaThrPheGlyAsp >>>> Target I : 394 ||||||||||:!::!!!!.:!!|||:!! !|||||||||||| 89 rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAsp++ 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATgt............. : 244817 395 : ntron 1 >>>> ValMetLysThrAlaPheAlaTyrLeuAsnIleLeu : 405 bp |||:!:||||||!.!|||||||||||||||!!:||| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeu 244818 : ............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTT : 244939 vulgar: CbirOr16 340 405 . KQ414889.1 244655 244939 + 217 M 53 159 5 0 2 I 0 85 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244939 217 + . gene_id 21 ; sequence CbirOr16 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244656 244814 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244814 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244815 244816 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244815 244903 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244902 244903 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244904 244939 . + . KQ414889.1 exonerate:protein2genome:local exon 244904 244939 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244939 217 + . alignment_id 21 ; Query CbirOr16 ; Align 244656 341 159 ; Align 244904 394 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 194 Query range: 340 -> 406 Target range: 264723 -> 265001 341 : GlnCysGlnLysValGlyGluMetValTyrMetThrGluTrpTyrArgLeuHisHisL : 360 ||||||:!!||||||||||||:!!|||||||||:!!.!.|||||| !|||! !:!!| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 361 : ysThrAlaHisAspLeuIleLeuIleIleSerArgSerAsnThrValIleLysIleTh : 379 || ! !! !||||||||||||||||||! !||||||!:!..!|||.!!|||.!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 380 : rAlaGlyLysMetIleGlnLeuSerIleAlaThrPheGlyAsp >>>> Target I : 394 ||||||||||!!::!!!!.:!!|||!!: !||||||.!!||| 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 395 : ntron 1 >>>> ValMetLysThrAlaPheAlaTyrLeuAsnIleLeuArg : 406 bp |||!!:|||:!!:!!|||.!!|||||||||:!!|||||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArg 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGC : 265001 vulgar: CbirOr16 340 406 . KQ414889.1 264723 265001 + 194 M 53 159 5 0 2 I 0 76 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265001 194 + . gene_id 22 ; sequence CbirOr16 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265001 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265001 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265001 194 + . alignment_id 22 ; Query CbirOr16 ; Align 264724 341 159 ; Align 264963 394 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 191 Query range: 340 -> 399 Target range: 277551 -> 277728 341 : GlnCysGlnLysValGlyGluMetValTyrMetThrGluTrpTyrArgLeuHisHisL : 360 ||||||:!!||||||||||||:!!||||||||||||.!.|||||| !|||! ! !!| GlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAspL 277552 : CAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCGACA : 277609 361 : ysThrAlaHisAspLeuIleLeuIleIleSerArgSerAsnThrValIleLysIleTh : 379 || ! !! !:!!|||:!!||||||||||||||||||!:! |||||||||||||| ysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIleTh 277610 : AAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaattac : 277666 380 : rAlaGlyLysMetIleGlnLeuSerIleAlaThrPheGlyAspValMetLysThrAla : 398 ||||||||||:::||||||:::|||:!: !||||||||||||||| ..! ! ! rAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspValArgSerLeuLeu 277667 : cgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTACGTTCACTTCTT : 277723 399 : Phe : 399 ||| Phe 277724 : TTT : 277728 vulgar: CbirOr16 340 399 . KQ414889.1 277551 277728 + 191 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277552 277728 191 + . gene_id 23 ; sequence CbirOr16 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277552 277728 . + . KQ414889.1 exonerate:protein2genome:local exon 277552 277728 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277552 277728 191 + . alignment_id 23 ; Query CbirOr16 ; Align 277552 341 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 190 Query range: 340 -> 400 Target range: 238625 -> 238805 341 : GlnCysGlnLysValGlyGluMetValTyrMetThrGluTrpTyrArgLeuHisHisL : 360 |||||| !||||||||||||:!!||||||||||||!!:|||||| !|||! !!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 361 : ysThrAlaHisAspLeuIleLeuIleIleSerArgSerAsnThrValIleLysIleTh : 379 :!! ! !! !||||||||||||||||||!.!|||||||||..!|||:!!|||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 380 : rAlaGlyLysMetIleGlnLeuSerIleAlaThrPheGlyAspValMetLysThrAla : 398 ||||||||||:!::!!!!.:!!|||:!! !|||||||||||||||! :!!||| ! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 399 : PheAla : 400 .!!||| LeuAla 238798 : CTTGCT : 238805 vulgar: CbirOr16 340 400 . KQ414889.1 238625 238805 + 190 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238805 190 + . gene_id 24 ; sequence CbirOr16 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238805 190 + . alignment_id 24 ; Query CbirOr16 ; Align 238626 341 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 302 -> 397 Target range: 224317 -> 224667 303 : IleMetGluTrpGluLeuHisAspThrLysAsnLeuLeuThrTyrPheThrIlePheI : 322 .!!...||||||... !! !! !:! !:!!|||||||||! !:!!.!!! PheGlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuM 224318 : TTTCaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCA : 224375 323 : leSerMetSerCysAsnIlePheIlePheCysTyrIleAlaGluIleLeuThrAspGl : 341 !:|||:::::: ||||||||||||||||||||||||!.!|||:!::!!.!!!!:|| etSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl 224376 : TGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAca : 224432 342 : nCysGln{L} >>>> Target Intron 1 >>>> {ys}ValGlyGluMetVal : 349 | :::{|} 65 bp {||}:::|||::!:!! ! nValLys{L}-+ +-{ys}IleGlyGlnValSer 224433 : ggtgaaa{a}at.........................aa{aa}attggacaAGTGTCG : 224521 350 : TyrMetThrGluTrpTyrArgLeuHisHisLysThrAlaHisAspLeuIleLeuIleI : 369 ||||||! !!!:|||||||||||| ! !!.! ! !! !! !|||||||||| TyrMetIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleI 224522 : TACATGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAA : 224581 370 : leSerArgSerAsnThrValIleLysIleThrAlaGlyLysMetIleGlnLeuSerIl : 388 ||:!!! !||||||:!! !||||||:!:|||||||||!!.|||:!!:!!|||!!!:! leAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLe 224582 : TCGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCT : 224638 389 : eAlaThrPheGlyAspValMetLysThr : 397 !.!!|||||||||||||||! ! ||| uThrThrPheGlyAspValSerIleThr 224639 : AACCACTTTCGGTGACGTAAGTATCACA : 224667 vulgar: CbirOr16 302 397 . KQ414889.1 224317 224667 + 183 M 41 123 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224318 224667 183 + . gene_id 25 ; sequence CbirOr16 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224318 224441 . + . KQ414889.1 exonerate:protein2genome:local exon 224318 224441 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224442 224443 . + . intron_id 1 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local intron 224442 224506 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224505 224506 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 224507 224667 . + . KQ414889.1 exonerate:protein2genome:local exon 224507 224667 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224318 224667 183 + . alignment_id 25 ; Query CbirOr16 ; Align 224318 303 123 ; Align 224509 345 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 179 Query range: 188 -> 247 Target range: 202712 -> 202889 189 : LeuValAspValArgTyrSerProAlaAsnGluIleValLeuGlyLeuGlnLeuMetS : 208 :!!:!!||||||||||||||||||!.!||||||||| !!!!!..!:!!!:!:!!:!:: IleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleValA 202713 : ATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAG : 202770 209 : erThrValIleValAsnSerValThrValGlyAlaCysSerLeuAlaAlaValPheAl : 227 !!..!:!!:!!:!!:!!.!!||||||||||||||||||!!!|||.!!|||:!!||||| laValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAl 202771 : CTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGC : 202827 228 : aMetHisAlaCysGlyGlnLeuAsnIleLeuMetIleLysLeuAspGluLeuValAsp : 246 |:!:|||! !|||||||||:!!:!!:!!|||||| ! !|||!!:.!.|||:!!||| aValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMetAsp 202828 : GGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGAT : 202884 247 : Gly : 247 ||| Gly 202885 : GGT : 202889 vulgar: CbirOr16 188 247 . KQ414889.1 202712 202889 + 179 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202713 202889 179 + . gene_id 26 ; sequence CbirOr16 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202713 202889 . + . KQ414889.1 exonerate:protein2genome:local exon 202713 202889 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202713 202889 179 + . alignment_id 26 ; Query CbirOr16 ; Align 202713 189 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 11 -> 120 Target range: 299659 -> 299989 12 : ArgAsnValMetHisGlnGlnAspSerGluTyrSerIleGlnLeuAsnArgTrpPheL : 31 |||||| ! :!!|||.!.|||! !.!.|||!!!:!:|||:!! !!:!|||!!.| ArgAsnTyrHisTyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuL 299660 : AGGAATTACCATTACCAAAATGACATACATTACACGCTGCAAATGTGCCAATGGTTGT : 299717 32 : euLysProIleGlyAlaTrpProArgAlaGlyAlaSerIleSerIleMetAsnLysLe : 50 ||||||||||||||!.!|||! ! ! !! ! ! !! !|||! :!!.!. ! || euLysProIleGlyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHisLe 299718 : TGAAACCTATCGGAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCT : 299774 51 : uLeuSerArgGlyIleGlnPheThrCysHisSerLeuIleAlaSerThrValIlePro : 69 |:!!|||! !! !:!!..! ! !||| !||| !:!: !! !! !|||:!:||| uValSerIleValLeuMetThrIleCysPheSerSerLeuPhePheIleValLeuPro 299775 : CGTCTCGATCGTTCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCA : 299831 70 : CysIleLeuTyrIleLeuPhe<->GluProAspValTyrLeuLysLeuLysAlaPheG : 88 ! ! !! !||||||!!!||| ||| !..!:!!:!!:!!|||:!!|||!.!|||| SerGlyHisTyrIlePhePheAlaGluLysSerIleHisValLysValLysValPheG 299832 : TCCGGTCATTACATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCG : 299891 89 : lyProMetIleHisTrpLeuMetGlyGlyAlaAsnTyrCysSerLeuLeuSerSerSe : 107 |||||:!: ! !!! ||| ..! !!.!!!.||||||! !|||! ! !!:!.! lyProValGlyPheCysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAsnGl 299892 : GTCCGGTTGGTTTTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGG : 299948 108 : rHisLysIleArgLysCysValAspHisMetArgThrAsp : 120 ! ! !.!!..!::!|||:!!.!.|||:!:..!! !||| yGlyAlaPheGluArgCysIleGlnHisValGluArgAsp 299949 : TGGCGCGTTCGAACGATGCATCCAACACGTCGAGAGAGAC : 299989 vulgar: CbirOr16 11 120 . KQ414889.1 299659 299989 + 161 M 65 195 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299660 299989 161 + . gene_id 27 ; sequence CbirOr16 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299660 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299660 299989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299660 299989 161 + . alignment_id 27 ; Query CbirOr16 ; Align 299660 12 195 ; Align 299858 77 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 270 -> 344 Target range: 263671 -> 264657 271 : SerPheValSerGlnIleGluAlaIleMetHisHisIleCysLeuIleGluLeuLeuG : 290 ||||||:!!..!!::|||:!! !:!:||| ! ||||||!!!:!:||||||!!! SerPheIleAspArgIleLysAsnValMetSerThrIleCysPheValGluLeuPheL 263672 : AGTTTCATAGATCGTATTAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCA : 263729 291 : lyCysThrIleAspIleCys{Me} >>>> Target Intron 1 >>>> {t}Le : 298 !..!|||:!:|||||||||{!!} 764 bp {:}:! ysAlaThrLeuAspIleCys{Il}+- +-{e}Il 263730 : AGGCTACGCTGGATATATGC{AT}gc.........................aa{T}AT : 264517 299 : uGlyTyrTyrThrIleMetGluTrpGluLeuHisAspThrLysAsnLeuLeuThrTyr : 317 ! ! ! !!..!.!!..!||||||||| !|||||| :::|||||| !|||||| eThrIleAspValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyr 264518 : AACAATTGACGTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATAT : 264574 318 : PheThrIlePheIleSerMetSerCysAsnIlePheIlePheCysTyrIleAlaGluI : 337 |||! !|||.!.|||||||||!!! !!|||||||||:!!.!.|||||||||!.!|||| PheMetIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluI 264575 : TTCATGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGA : 264634 338 : leLeuThrAspGlnCysGlnLys : 344 ||||||||!!:||| ||| leLeuThrGluGlnValIleLys 264635 : TATTGACTGAGcaggtaattaaa : 264657 vulgar: CbirOr16 270 344 . KQ414889.1 263671 264657 + 158 M 26 78 S 0 2 5 0 2 I 0 760 3 0 2 S 1 1 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 263672 264657 158 + . gene_id 28 ; sequence CbirOr16 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 263672 263751 . + . KQ414889.1 exonerate:protein2genome:local exon 263672 263751 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263752 263753 . + . intron_id 1 ; splice_site "GC" KQ414889.1 exonerate:protein2genome:local intron 263752 264515 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264514 264515 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 264516 264657 . + . KQ414889.1 exonerate:protein2genome:local exon 264516 264657 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 263672 264657 158 + . alignment_id 28 ; Query CbirOr16 ; Align 263672 271 78 ; Align 264517 298 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 340 -> 399 Target range: 283276 -> 283453 341 : GlnCysGlnLysValGlyGluMetValTyrMetThrGluTrpTyrArgLeuHisHisL : 360 ||||||:!!||||||||||||:!!||||||||||||.!.! !!:! !|||! ! !!| GlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProAspL 283277 : CAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCGACA : 283334 361 : ysThrAlaHisAspLeuIleLeuIleIleSerArgSerAsnThrValIleLysIleTh : 379 || ! !! !:!!|||:!!||||||||||||||||||!:! |||||||||||||| ysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIleTh 283335 : AAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaattac : 283391 380 : rAlaGlyLysMetIleGlnLeuSerIleAlaThrPheGlyAspValMetLysThrAla : 398 ||||...|||:::||||||::!||| !||||||! !|||||| ..! ! ! rAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspValArgSerLeuLeu 283392 : cgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTACGTTCACTTCTT : 283448 399 : Phe : 399 ||| Phe 283449 : TTT : 283453 vulgar: CbirOr16 340 399 . KQ414889.1 283276 283453 + 155 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283277 283453 155 + . gene_id 29 ; sequence CbirOr16 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283277 283453 . + . KQ414889.1 exonerate:protein2genome:local exon 283277 283453 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283277 283453 155 + . alignment_id 29 ; Query CbirOr16 ; Align 283277 341 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 336 -> 394 Target range: 214848 -> 215022 337 : IleLeuThrAspGlnCysGlnLysValGlyGluMetValTyrMetThrGluTrpTyrA : 356 |||:!! !.!.||||||:!!||||||||||||:!: !||||||! !|||||||||| IleMetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrA 214849 : ATTATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACC : 214906 357 : rgLeuHisHisLysThrAlaHisAspLeuIleLeuIleIleSerArgSerAsnThrVa : 375 |||||! !!!.! ! !! ! !! !|||||||||!!::!!! !||||||:!! rgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSe 214907 : GATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATC : 214963 376 : lIleLysIleThrAlaGlyLysMetIleGlnLeuSerIleAlaThrPheGlyAspVal : 394 !:!!|||.!!|||||||||!!.|||:!!:!!|||||||||::!||||||.!!..!||| rValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214964 : CGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215020 vulgar: CbirOr16 336 394 . KQ414889.1 214848 215022 + 152 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214849 215022 152 + . gene_id 30 ; sequence CbirOr16 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214849 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214849 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214849 215022 152 + . alignment_id 30 ; Query CbirOr16 ; Align 214849 337 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 340 -> 408 Target range: 206239 -> 207604 341 : GlnCysGlnLysValGlyGluMetValTyrMetThrGluTrpTyrArgLeuHisHisL : 360 ||| !!!. |||||| !! !! !! !..!.!.||||||||||||! :!!! GlnAsnHisValValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnA 206240 : CAGAACCACGTCGTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACA : 206297 361 : ysThrAlaHisAspLeuIleLeuIleIleSerArgSerAsnThrValIleLysIleTh : 379 :! !|||!.!..!:!!||||||||||||:!!! !|||||| ! !||||||:!!|| rgHisAlaArgSerMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuTh 206298 : GACATGCGCGCTCTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAAC : 206354 380 : rAlaGlyLysMetIleGlnLeuSerIleAlaThrPheGlyAsp >>>> Target I : 394 |||||||||||||.!!:!!:!!|||:!!|||!:!||| !||| 1161 rAlaGlyLysMetPheGluMetSerLeuAlaSerPheThrAsp++ 206355 : AGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTCACCGATgt............. : 206401 395 : ntron 1 >>>> ValMetLysThrAlaPheAlaTyrLeuAsnIleLeuArgThrVa : 408 bp |||||||||..!|||.!.!.!|||!!!|||||||||||| !|| ++ValMetLysValAlaMetGlyTyrPheAsnIleLeuArgGluVa 206402 : ............agGTAATGAAGGTGGCGATGGGATACTTCAACATACTCCGTGAAGT : 207602 409 : l : 408 | l 207603 : C : 207604 vulgar: CbirOr16 340 408 . KQ414889.1 206239 207604 + 151 M 53 159 5 0 2 I 0 1157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206240 207604 151 + . gene_id 31 ; sequence CbirOr16 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206240 206398 . + . KQ414889.1 exonerate:protein2genome:local exon 206240 206398 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206399 206400 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206399 207559 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 207558 207559 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 207560 207604 . + . KQ414889.1 exonerate:protein2genome:local exon 207560 207604 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206240 207604 151 + . alignment_id 31 ; Query CbirOr16 ; Align 206240 341 159 ; Align 207560 394 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 340 -> 408 Target range: 292389 -> 292593 341 : GlnCysGlnLysValGlyGluMetValTyrMetThrGluTrpTyrArgLeuHisHisL : 360 ||| !!...:!!:!!!.!.!. !||| ||||||||||||!.!|||! ...: GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 361 : ysThrAlaHisAspLeuIleLeuIleIleSerArgSerAsnThrValIleLysIleTh : 379 :!! !|||!.!|||:!!:!!|||:!::!!:!!! !!!!!!. ! !||||||:!!|| rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 380 : rAlaGlyLysMetIleGlnLeuSerIleAlaThrPheGlyAspValMetLysThrAla : 398 ||||||||||!!:.!! ||||||:!: !|||||||||! !||| :!!:!! ! rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSerLys 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCAAAA : 292561 399 : PheAlaTyrLeuAsnIleLeuArgThrVal : 408 .!.!.!! :!!:!! ! !|||! !||| LeuValLeuIleHis***GluArgIleVal 292562 : CTAGTCTTGATACACTAAGAACGTATAGTT : 292593 vulgar: CbirOr16 340 408 . KQ414889.1 292389 292593 + 117 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 292593 117 + . gene_id 32 ; sequence CbirOr16 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292390 292593 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292593 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 292593 117 + . alignment_id 32 ; Query CbirOr16 ; Align 292390 341 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 304 -> 341 Target range: 277371 -> 277482 305 : GluTrpGluLeuHisAspThrLysAsnLeuLeuThrTyrPheThrIlePheIleSerM : 324 ||||||... ! !|||..!:!!!..:!! !|||:!!|||! !|||.!!||||||| GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 325 : etSerCysAsnIlePheIlePheCysTyrIleAlaGluIleLeuThrAspGln : 341 || ||||||||| ! ! |||||||||!.!||||||||||||!!:||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAG : 277482 vulgar: CbirOr16 304 341 . KQ414889.1 277371 277482 + 104 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277482 104 + . gene_id 33 ; sequence CbirOr16 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277482 104 + . alignment_id 33 ; Query CbirOr16 ; Align 277372 305 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 304 -> 341 Target range: 214629 -> 214740 305 : GluTrpGluLeuHisAspThrLysAsnLeuLeuThrTyrPheThrIlePheIleSerM : 324 ||||||.!.! !:!!:!! !! !!.! !:!!|||||| ! ..!:!:!:!||||||: GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValValLeuTyrIleSerL 214630 : gAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGGTGTTGTATATCTCTC : 214687 325 : etSerCysAsnIlePheIlePheCysTyrIleAlaGluIleLeuThrAspGln : 341 ::::: ||||||||||||||||||||||||!.!|||:!!:!!:!!!!:||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValSerGluGln 214688 : tcactttcaatattttcatattttgttaCATAGGCGAGCTTGTGTCTGAACAG : 214740 vulgar: CbirOr16 304 341 . KQ414889.1 214629 214740 + 101 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214630 214740 101 + . gene_id 34 ; sequence CbirOr16 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214630 214740 101 + . alignment_id 34 ; Query CbirOr16 ; Align 214630 305 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 577 Query range: 10 -> 391 Target range: 208185 -> 211932 11 : AsnGluGluHisPheLeuAspPheHisTyrAlaAlaGlnValSerLeuTrpLeuLeuL : 30 |||..!.!.:!! !|||.!. !!:! !!.!!:::!!!:!:!!||| !|||| AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 31 : ysProMetGlyAlaTrpProLeuGlnGlnGlnProThrIleLeuGluIleIleValTy : 49 || !!!:|||:!!|||||| !... !.!.! !:!! ||||||! !! ! !:! ysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHi 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCA : 208300 50 : rIlePheSerIleAlaIleThrThrPheLeuGlnLeuPheMetIleIleProTrpPhe : 68 !|||.!!! !! !!.!:!!!:! !! !|||! !|||!!::!:|||||| ! sIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGly 208301 : TATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGC : 208357 69 : LeuSerIleIleThrAlaAsnTrpSerPheTyrAspIleIleArgThrAlaCysProL : 88 :!!! ! ||| !!.! ! !..!||||||||| !:!!!:!! !..! !! !!| MetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaL 208358 : ATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTC : 208417 89 : euIlePheValAsnThrIlePheLeuArgTyrLeuLeuLeuLeuPheHisArgAspAl : 107 ||! !||| !!! ! ! ||| !!:!|||:!!:!!:!! ! !!!.!..!! !! euSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAs 208418 : TGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGA : 208474 108 : aIleArgSerCysIleAsnCysValAlaGluAspTrpArgAsnValValIleAlaGlu : 126 !||||||!.!|||:!!.!.! !|||! !! |||||||||||||||! ! !! !||| pIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGlu 208475 : CATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAG : 208531 127 : HisArgGluIleMetLeuThrAsnAlaLysSerGlyArgPhePheGlyMetValSerV : 146 !!|||:!!||||||||| !||||||!..! !!.!||| .!. !:!!:!!!!!! AspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysG 208532 : GACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCG : 208591 147 : alAlaPheMetPheSerSerGlyLeuProTyrCysVal<->MetProLeuLeuLeuPr : 164 !|||||||||!:!.!!.!. ::: ||| :!! :!!|||||| !! ! lyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAs 208592 : GAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGA : 208648 165 : oSerProValAsnGlu<->AspAsnValThrIleLysValPheProAsnProCysGlu : 182 !!.! !|||.!.||| ! !|||:!!||| !!:! !.!. ! !!||| ! pLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValPro 208649 : CAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCT : 208705 183 : LeuIlePheValAspValGlnValSerProPheTyrGluValAlaTyrThrLeuAspV : 202 !.!!.!!:!!||||||!:! !|||||| ! !!|||:!! !||||||:!!.!.: LysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnL 208706 : AAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAAT : 208765 203 : alPheAlaCysCysValPheTyrThrIlePheCysGlyIleCysSerLeuThrAlaLy : 221 !!!!.:!! !!! !||| !:!!!.!||| !||| !|||.!!|||.!!||| euLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLe 208766 : TGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCT : 208822 222 : sPheValMetHisAlaCysGlyGlnCysGluIleLeuMetAspPhePheGluLysLeu : 240 !.!!!.!|||||||||||||||||| :!!|||||||||..!!::.!.||||||||| uLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeu 208823 : GCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTG : 208879 241 : ValAspGlyAspAspLysAsnGluSerThrIleAsnGlnArgIleSerAsnValValT : 260 ||||||||| !!: ! .!.|||!.!!.!:!::!!||||||:!::!!|||:!!||| ValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleValG 208880 : GTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCGTGG : 208939 261 : hrHisHisLeuArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}Ph : 268 !!!.|||:!!|||:!::!!{!!} 1536 bp {.}|| luGlnHisValArgValIle{As}++ ++{n}Ph 208940 : AGCAGCATGTTCGAGTGATC{AA}gt.........................ag{T}TT : 210499 269 : eValSerAspValAspLysValLeuAsnGluIleCysLeuAlaGluPheLeuAsnSer : 287 |:!!:!! ..!!!:!!.:!!|||:!!||||||! ||| !|||.!.:!!...!!! eIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGluMetValGlyCys 210500 : TATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAATGGTGGGGTGC : 210556 288 : SerCysAsnIleCysLeuLeuGlyTyrTyrValIleVal >>>> Target Intro : 301 !!! |||!!:|||!!!||||||||||||..!!!::!! 66 bp ThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210557 : ACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt................. : 210600 302 : n 2 >>>> AspLeuArgAsnHisGluProMetIleGlnIlePheValTyrPheVal : 316 !!:! ! !::! ! !!:||| |||...! !.!...!|||.!.||| ++GluTrpAspSerLysAspPro---IleSerSerLeuThrTyrIleVal 210601 : ........agGAATGGGACTCTAAAGACCCT---ATCAGCAGTCTGACGTACATAGTA : 210706 317 : AlaCysValSerIleThrPheAsnIleTyrIlePheCysTyrIleGlyGluGlnLeuV : 336 ! !..!|||:!!||||||||||||!:!||||||||||||||||||||| !|||! LeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuA 210707 : CTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGG : 210766 337 : alAspArg >>>> Target Intron 3 >>>> AlaGlnLysIleGlyThrThr : 345 .!!!:!:: 999 bp .!! !|||:!!||| !! ! laGluGln++ ++ThrValLysValGlyGluLys 210767 : CTGAACAggt.........................agACAGTAAAAGTTGGAGAAAAG : 211792 346 : CysTyrMetIleGluTrpTyrGlnLeuProAsnAspLysAlaArgSerMetIlePheP : 365 ! !|||||||||!!:||||||!:!:!!|||... ! |||!.! ! !:!: !!!. SerTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValValProLeuM 211793 : TCTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGA : 211852 366 : roIleIleMetSerSerTyrProIleGluLeuThrAlaGlyLysMetLeuLysMetTh : 384 !||| !|||||| !! !!! !:!!:!!|||||||||!!.:!::!! :!::! etIleSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleValLeuSe 211853 : TGATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTTCTTTC : 211909 385 : rMetSerSerPheSerAsnIle : 391 !!!:|||||||||.!!:!!:!! rIleSerSerPheGlyAspVal 211910 : AATCAGTAGTTTCGGTGACGTA : 211932 vulgar: CbirOr4 10 391 . KQ414889.1 208185 211932 + 577 M 148 444 G 0 3 M 11 33 G 0 3 M 97 291 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 7 21 G 1 0 M 30 90 5 0 2 I 0 995 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 211932 577 + . gene_id 1 ; sequence CbirOr4 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208186 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208961 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211932 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211932 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208186 211932 577 + . alignment_id 1 ; Query CbirOr4 ; Align 208186 11 444 ; Align 208633 159 33 ; Align 208669 170 291 ; Align 210499 268 99 ; Align 210664 301 21 ; Align 210685 309 90 ; Align 211774 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 569 Query range: 16 -> 401 Target range: 278567 -> 280465 17 : AspPheHisTyrAlaAlaGlnValSerLeuTrpLeuLeuLysProMetGlyAlaTrpP : 36 |||!:: |||::!!.!|||:!!!:!! !|||!!!|||||||||!!:|||!.!|||| AspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpP 278568 : GATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGC : 278625 37 : roLeuGlnGlnGlnProThrIleLeuGluIleIleValTyrIlePheSerIleAlaIl : 55 |||||...! !|||! !||||||! ||| !! !:!: !! ! !|| roLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIl 278626 : CTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAAT : 278682 56 : eThrThrPheLeuGlnLeuPheMetIleIleProTrpPheLeuSerIleIleThrAla : 74 |!:! !|||||| ! !|||:!::!::!!|||!! !|||!!!! !:!: !! ! eSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAsp 278683 : CAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGAC : 278739 75 : AsnTrpSerPheTyrAspIle<->IleArgThrAlaCysProLeuIlePheValAsnT : 93 !!. .!! ! !|||! |||!:!! ! ! !!||||||! !||| !!..! LysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrM 278740 : AAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGA : 278799 94 : hrIlePheLeuArgTyrLeuLeuLeuLeuPheHisArgAspAlaIleArgSerCysIl : 112 ! ! :!!!:!|||! !:!!|||:!!! !.! !!! ! !||| !!!.!|||:! etAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysVa 278800 : TGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGT : 278856 113 : eAsnCysValAlaGluAspTrpArgAsnValValIle<-><-><->AlaGluHisArg : 128 :||| !:!! ! !|||||| ! !..!:!! |||...||| lAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArg 278857 : GAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagaga : 278913 129 : GluIleMetLeuThrAsnAlaLysSerGlyArgPhePheGlyMetValSerValAlaP : 148 ||||||||| ! !!:!|||!:!! !||||||! !!!.!.!!!: !!|||!.!!.!| GluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyP 278914 : gagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTT : 278973 149 : heMetPheSerSerGlyLeuProTyr<->CysValMetProLeuLeuLeuProSerPr : 166 |||||!:!|||.!!|||:!! !||| ..!||||||||||||!!! ! ! !! ! heMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgTh 278974 : TCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCAC : 279030 167 : oValAsnGluAspAsnValThrIleLysValPheProAsnProCysGluLeuIlePhe : 185 !! !! ! ||||||! !|||:!:!:! ! !! !||| ! ! ! ! !.!! rGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeu 279031 : GGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTC : 279087 186 : ValAspValGlnValSerProPheTyrGluValAlaTyrThrLeuAspValPheAlaC : 205 :!!||| !!::..!||||||! !:!|||:!!!.! ! !:!!.!. !!!.|||. LeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaA 279088 : CTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCG : 279147 206 : ysCysValPheTyrThrIlePheCysGlyIleCysSerLeuThrAlaLysPheValMe : 224 ..! !|||!!.|||:!!:!! ! !||| !|||||||||! !||| !|||||||| laPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMe 279148 : CGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCAT : 279204 225 : tHisAlaCysGlyGlnCysGluIleLeuMetAspPhePheGluLysLeuValAspGly : 243 ||||!.!|||||||||! !..!||||||:!! .!.!!:||||||:!!|||||| tHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGly 279205 : GCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGA : 279261 244 : <-><->AspAspLysAsnGluSerThrIleAsnGlnArgIleSerAsnValValThrH : 261 ! |||!:! !|||||| !.!.||||||:!:.!!:!!:!!:!! !| ValLysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluH 279262 : GTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGC : 279321 262 : isHisLeuArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheVa : 269 ||||||||!:!||||||{ } 571 bp { }|||:! isHisLeuLysIleLeu{Gl}++ ++{y}PheIl 279322 : ATCATCTGAAGATACTG{GG}gt.........................ag{T}TTTAT : 279916 270 : lSerAspValAspLysValLeuAsnGluIleCysLeuAlaGluPheLeuAsnSerSer : 288 !|||.!.:!!!!: !:!!|||||||||||||||!!!!.!||| ! :!!..!!!!!!! eSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThr 279917 : ATCGCAAATCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACG : 279973 289 : CysAsnIleCysLeuLeuGlyTyrTyrValIleVal >>>> Target Intron 2 : 301 ! |||||||||!!!||| !||||||:!!:!!..! 80 bp LeuAsnIleCysPheLeuThrTyrTyrLeuLeuThr++ 279974 : TTGAACATATGCTTTTTGACATATTATTTACTCACGgt.................... : 280014 302 : >>>> AspLeuArgAsnHisGluProMetIleGlnIlePheValTyrPheValAla : 317 !!:! !..!.!.:!!!!: ||| !! |||..!|||!!.:!! ! ++GluTrpGluGlnAsnAsp---AlaIleGlyThrPheThrTyrLeuMetPhe 280015 : .....agGAATGGGAGCAAAATGAC---GCTATAGGAACGTTCACGTATTTAATGTTT : 280137 318 : CysValSerIleThrPheAsnIleTyrIlePheCysTyrIleGlyGluGlnLeuValA : 337 !:!!|||:!!|||||||||:!!!:!|||.!!||||||||||||||| ||| !! LeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerG 280138 : CTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCG : 280197 338 : spArg >>>> Target Intron 3 >>>> AlaGlnLysIleGlyThrThrCys : 346 !:!:: 74 bp ..! !|||:!!|||..!:!! ! luGln++ ++CysLeuLysValGlyValSerThr 280198 : AACaggt.........................agTGCTTAAAAGTCGGCGTGTCAACT : 280298 347 : TyrMetIleGluTrpTyrGlnLeuProAsnAspLysAlaArgSerMetIlePheProI : 366 |||||||||!!:||||||!::||||||... ! ||||||!:!.!!:!!|||.!. !. TyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIleP 280299 : TACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATAT : 280358 367 : leIleMetSerSerTyrProIleGluLeuThrAlaGlyLysMetLeuLysMetThrMe : 385 !! !:!!|||!:!! ! !!|||:!!|||||||||||||||!!::!! ! :!::!!:! heAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLe 280359 : TCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTT : 280415 386 : tSerSerPheSerAsnIleLeuLysIleSerMetThrTyrPheAsnLeu : 401 :|||||||||!!!!:!:!: !! |||!:!:!::!!|||!:!:!!||| uSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280416 : AAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: CbirOr4 16 401 . KQ414889.1 278567 280465 + 569 M 65 195 G 0 3 M 43 129 G 0 9 M 32 96 G 0 3 M 87 261 G 0 6 M 23 69 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 6 18 G 1 0 M 31 93 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278568 280465 569 + . gene_id 2 ; sequence CbirOr4 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278568 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278568 279340 . + . insertions 21 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278568 280465 569 + . alignment_id 2 ; Query CbirOr4 ; Align 278568 17 195 ; Align 278766 82 129 ; Align 278904 125 96 ; Align 279003 157 261 ; Align 279270 244 69 ; Align 279913 268 99 ; Align 280092 301 18 ; Align 280110 308 93 ; Align 280277 339 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 558 Query range: 12 -> 391 Target range: 217153 -> 219671 13 : GluHisPheLeuAspPheHisTyrAlaAlaGlnValSerLeuTrpLeuLeuLysProM : 32 |||::: :::...::: ::! !||| !!:!! !|||||||||||||||| GluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProM 217154 : GAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGA : 217211 33 : etGlyAlaTrpProLeuGlnGlnGlnProThrIleLeuGluIleIleValTyrIlePh : 51 ||||| !|||||| !..!!:: !!|||! !! !..!! !|||:!!|||! !.! etGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLe 217212 : TGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACT : 217268 52 : eSerIleAlaIleThrThrPheLeuGlnLeuPheMetIleIleProTrpPheLeuSer : 70 .! !! !|||:!! ! ! !||| ! !|||:!:.!!:!!|||!! ! !:!!! ! uIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyr 217269 : GATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTAC : 217325 71 : IleIleThrAlaAsnTrpSerPheTyrAspIleIleArgThrAlaCysProLeuIleP : 90 :!:.!! !! ! ! ..!.!!||||||! :!:!:! ! ! !!|||||||||| ValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIleP 217326 : GTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCT : 217385 91 : heValAsnThrIlePheLeuArgTyrLeuLeuLeuLeuPheHisArgAspAlaIleAr : 109 || ! ! ! |||:!!!:!|||! !! !|||:!! !!|||!:!! ! !||||| heCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleAr 217386 : TCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCG : 217442 110 : gSerCysIleAsnCysValAlaGluAspTrpArgAsnValValIleAlaGluHisArg : 128 |..!|||:!:!.. ! :!!! !..!||||||||||||||| ! !! !:!! !!||| gGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArg 217443 : CGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGG : 217499 129 : GluIleMetLeuThrAsnAlaLysSerGlyArgPhePheGlyMetValSerValAlaP : 148 ||| |||:!!..!||||||!!.! !|||||| !!.! !:!::!!!!!..! !| GluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPheP 217500 : GAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCT : 217559 149 : heMetPheSerSerGlyLeuProTyrCysVal<->MetProLeuLeuLeuProSerPr : 166 |||||!:!|||... ::: ||| ::! !!:|||:!! !:!! !!!! heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIl 217560 : TCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAAT : 217616 167 : oValAsnGluAsp<->AsnValThrIleLysValPheProAsnProCysGluLeuIle : 184 !:!!:::|||:!! |||:!!|||.!!! !!!. ! !|||! ! ! ! ! eLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyr 217617 : TCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTAT : 217673 185 : PheValAspValGlnValSerProPheTyrGluValAlaTyrThrLeuAspValPheA : 204 .!!:!!|||..!!:: !!!!||| !!|||:!!!.!!:! !|||.!.:!!.!!| IleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleA 217674 : ATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCG : 217733 205 : laCysCysValPheTyrThrIlePheCysGlyIleCysSerLeuThrAlaLysPheVa : 223 || ! ..!:!!.!.:!! !||| ! !.! !|||||||||.!!||| |||!. laGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAl 217734 : CTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGC : 217790 224 : lMetHisAlaCysGlyGlnCysGluIleLeuMetAspPhePheGluLysLeuValAsp : 242 !:!:||||||||||||||| !|||:!:||||||:!!!::.!.:!! ! |||:!!||| aValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAsp 217791 : GGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGAC : 217847 243 : GlyAspAspLysAsnGluSerThrIleAsnGlnArgIleSerAsnValValThrHisH : 262 ||| ! ! ! .....!|||:!::!! ||||||:!!!:!:!!|||!:!!!.| GlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnH 217848 : GGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAAC : 217907 263 : isLeuArgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheValSe : 270 ||:!!|||||||||{||} 1229 bp {|}|||::::! isValArgIleLeu{Ly}++ ++{s}PheLeuTh 217908 : ACGTTCGGATATTA{AA}gt.........................ag{a}tttttgaC : 219160 271 : rAspValAspLysValLeuAsnGluIleCysLeuAlaGluPheLeuAsnSerSerCys : 289 ! !..!!!:!:!..!|||.!.:!!|||! !!!!||||||||||||...!!!!!! rLeuThrGluArgThrLeuGlnGlnIleSerPheAlaGluPheLeuGlyCysThrMet 219161 : GCTCACAGAGAGAACCCTCCAGCAAATCTCTTTCGCTGAATTTCTAGGATGCACCATG : 219217 290 : AsnIleCysLeuLeuGlyTyrTyrValIleVal >>>> Target Intron 2 >> : 301 :!!|||||||||:!!|||||||||:!!|||||| 76 bp AspIleCysLeuValGlyTyrTyrIleIleVal++ 219218 : GACATATGTCTCGTTGGATATTACATTATCGTGgt....................... : 219255 302 : >> AspLeuArgAsnHisGluProMetIleGlnIlePheValTyrPheValAlaCys : 318 !!:! !!:!::::!!!!: :!:! ... ! ! ..!|||.!!:!! ! ! ++GluTrpLysSerAsnAsp---ValThrSerAlaValThrTyrIleIleLeuLeu 219256 : ..agGAATGGAAATCGAATGAT---GTAACGAGTGCAGTGACATACATCATTCTACTT : 219377 319 : ValSerIleThrPheAsnIleTyrIlePheCysTyrIleGlyGluGlnLeuValAspA : 338 :!!|||:!:||||||||||||:::||||||||||||||||||||| :!!!.!!!:! IleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluG 219378 : ATATCCCTcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAAC : 219437 339 : rg >>>> Target Intron 3 >>>> AlaGlnLysIleGlyThrThrCysTyr : 347 :: 73 bp ...:::||||||||| ||| ln++ ++CysArgLysIleGlyGluMetSerTyr 219438 : Aggt.........................agTGtaggaaaattggagaaatgtCGTAC : 219537 348 : MetIleGluTrpTyrGlnLeuProAsnAspLysAlaArgSerMetIlePheProIleI : 367 |||||||||||||||!:!||| !!... ! ||| !! !!!!! :!!!!. !!||| MetIleGluTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleA 219538 : ATGATCGAATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCG : 219597 368 : leMetSerSerTyrProIleGluLeuThrAlaGlyLysMetLeuLysMetThrMetSe : 386 !||||||!:!! ! !!|||:!!||||||||||||!!.|||:!!:!!:!!:!!!!:|| laMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSe 219598 : CTATGTCGAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAG : 219654 387 : rSerPheSerAsnIle : 391 |!!!|||!!!:!!:!: rThrPheThrAspVal 219655 : CACTTTTACCGACGTG : 219671 vulgar: CbirOr4 12 391 . KQ414889.1 217153 219671 + 558 M 146 438 G 0 3 M 12 36 G 0 3 M 96 288 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 6 18 G 1 0 M 31 93 5 0 2 I 0 69 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217154 219671 558 + . gene_id 3 ; sequence CbirOr4 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217154 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217154 217923 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217154 219671 558 + . alignment_id 3 ; Query CbirOr4 ; Align 217154 13 438 ; Align 217595 159 36 ; Align 217634 171 288 ; Align 219154 268 99 ; Align 219329 301 18 ; Align 219347 308 93 ; Align 219513 339 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 466 Query range: 17 -> 400 Target range: 226924 -> 230433 18 : PheHisTyrAlaAlaGlnValSerLeuTrpLeuLeuLysProMetGlyAlaTrpProL : 37 !!.:!! ::! !|||:!!!:!! !|||||||||||||||:!:||| !||||||! LeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProS 226925 : TTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGT : 226982 38 : euGlnGlnGlnProThrIleLeuGluIleIleValTyrIlePheSerIleAlaIleTh : 56 !..!!:::!! !:!! !:!!! !! ! ! !!! ! !!.! ! ! !:!! erSerArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCy 226983 : CGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTG : 227039 57 : rThrPheLeuGlnLeuPheMetIleIleProTrpPheLeuSerIleIleThrAlaAsn : 75 ! ! |||..! !||| !:!::!! !! ! !|||! !:!::!! !! ! sTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluVal 227040 : TTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTG : 227096 76 : TrpSerPheTyrAspIleIleArgThrAlaCysProLeuIlePheValAsnThrIleP : 95 .!! !|||:!!! :!:!:!! ! ! !!|||:!! !||| !! ! ! !. LysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerL 227097 : AAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCC : 227156 96 : heLeuArgTyrLeuLeuLeuLeuPheHisArgAspAlaIleArgSerCysIleAsnCy : 114 !!|||!:!|||! !:!!||| !||||||..!|||! !|||! !..!|||:!!.!. ! euLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluAr 227157 : TCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACG : 227213 115 : sValAlaGluAspTrpArgAsnValValIleAlaGluHisArgGluIleMetLeuThr : 133 :!! ! !||||||!:!|||:!! ! ! !||| !!|||.!.:!:|||:!!||| gIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThr 227214 : GATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACG : 227270 134 : AsnAlaLysSerGlyArgPhePheGlyMetValSerValAlaPheMetPheSerSerG : 153 !!||| ! ! !|||||| !!. !! :!!!!!..! !|||:!:||||||||| TyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerP 227271 : TACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtt : 227330 154 : lyLeu<->ProTyrCysValMetProLeuLeuLeuProSerProValAsnGluAsp<- : 171 ::: ||| !|||:!:|||:!! ! ! !||| !!.!!..|||||| heValPhePheTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGl 227331 : tcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGG : 227387 172 : >AsnValThrIleLysValPheProAsnProCysGluLeuIlePheValAspValGln : 189 ||| !!:! !! !.!.||| !|||! ! ! !|||.!!!.!||||||!:: yAsnHisSerTyrIleGlnMetProPheProPheProLysIleIleAlaAspValArg 227388 : AAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGT : 227444 190 : ValSerProPheTyrGluValAlaTyrThrLeuAspValPheAlaCysCysValPheT : 209 !||||||||| !!|||:!! !!:!:!!:!!.!. !! ! .!! !! !|||!!.: TyrSerProPheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuH 227445 : TACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGC : 227504 210 : yrThrIlePheCysGlyIleCysSerLeuThrAlaLysPheValMetHisAlaCysGl : 228 !! !:!! ! !.! !||||||:!!.!!||| !.!!!.!:!:||||||||||| isGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGl 227505 : ACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGG : 227561 229 : yGlnCysGluIleLeuMetAspPhePheGluLysLeuValAspGlyAspAspLysAsn : 247 |||| |||:!:|||:!!..!!::.!.! ! ! |||:!!|||||| ! ! ! yGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGlyArgAlaAspMet 227562 : TCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGCAGAGCGGATATG : 227618 248 : GluSerThrIleAsnGlnArgIleSerAsnValValThrHisHisLeuArgIleLeuL : 267 ...!.!|||:!::!!.!.||||||:!!!:!:!!||||||||||||:!!|||||||||| SerLysThrLeuAspAspArgIleAlaSerIleValThrHisHisValArgIleLeuL 227619 : AGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACCACGTTCGAATATTGA : 227678 268 : ysPheValSerAspValAspLysValLeuAsnGluIleCysLeuAlaGluPheLeuAs : 286 ||! !|||!!! !:!! !! !:!!! !..!!!: !! !||| ...||| .. ysCysValThrCysIleTyrLeuLeuTyrArgAsp***PheLeuLeuAsnPheAsnGl 227679 : AGTGTGTAACGTGTATCTATTTGTTGTATCGTGATTAATTTCTcttgaattttaatca : 227735 287 : nSerSerCysAsnIleCysLeuLeuGlyTyrTyrValIleValAsp >>>> Targe : 302 . !||| ! !! ! ! ! !||| ! !! :!!!!: nTyrSerArgLeuAlaTyrAsnAlaLeuTyrGluPheAlaLeuGlu+- 227736 : atACAGCAGACTAGCTTATAACGCGTTGTATGAATTCGCGTTAGAGga.......... : 227785 303 : t Intron 1 >>>> LeuArgAsnHisGluProMetIleGlnIlePheValTyrPh : 315 465 bp ! !!|||! :!! !:!:! ! ! ! ..!|||! ++GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSe 227786 : ...............agGAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTC : 228287 316 : eValAlaCysValSerIleThrPheAsnIleTyrIlePheCysTyrIleGlyGluGln : 334 !.! ! !:!!|||.!!||||||||||||:::||||||||||||||||||||| rAlaLeuLeuLeuSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIle 228288 : AGCGTTACTTTTATCCTTTAccttcaatattttcatattttgttaTATAGGAGAAATT : 228344 335 : LeuValAspArg >>>> Target Intron 2 >>>> AlaGlnLysIleGlyTh : 344 :!!!.!!!:!.! 1889 bp ..!::!|||:!!||| ValAlaGluHis++ ++CysArgLysValGlyGl 228345 : GTTGCCGAACACgt.........................agTGCAGAAAAGTCGGCGA : 230263 345 : rThrCysTyrMetIleGluTrpTyrGlnLeuProAsnAspLysAlaArgSerMetIle : 363 !! !! ||||||||||||||||||!:!||| !!...:!!||| !! !!!! ||| uLysSerTyrMetIleGluTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIle 230264 : AAAGTCGTACATGATCGAATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATT : 230320 364 : PheProIleIleMetSerSerTyrProIleGluLeuThrAlaGlyLysMetLeuLysM : 383 !!. !||| !||||||!:!! ! !!! :!!!!!|||||||||!!.|||:!!:!!: LeuIleIleAlaMetSerAsnCysSerThrLysPheThrAlaGlyAsnMetValGluL 230321 : TTGATCATCGCCATGTCCAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAAT : 230380 384 : etThrMetSerSerPheSerAsnIleLeuLysIleSerMetThrTyrPheAsn : 400 !::!!:!:!:!!!!||||||:!!:!! !! |||! ! ..!||| ||| euSerValAsnThrPheSerAspValSerIleIlePheSerValTyrThrAsn 230381 : TATCCGTAAACACTTTCAGCGACGTAAGTATCATATTCTCTGTTTACACGAAT : 230433 vulgar: CbirOr4 17 400 . KQ414889.1 226924 230433 + 466 M 137 411 G 0 3 M 16 48 G 0 3 M 131 393 5 0 2 I 0 461 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226925 230433 466 + . gene_id 4 ; sequence CbirOr4 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226925 227782 . + . KQ414889.1 exonerate:protein2genome:local exon 226925 227782 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 227783 227784 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 227783 228247 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226925 230433 466 + . alignment_id 4 ; Query CbirOr4 ; Align 226925 18 411 ; Align 227339 155 48 ; Align 227390 171 393 ; Align 228248 302 111 ; Align 230248 339 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 379 Query range: 16 -> 299 Target range: 284514 -> 286795 17 : AspPheHisTyrAlaAlaGlnValSerLeuTrpLeuLeuLysProMetGlyAlaTrpP : 36 |||!:: |||::!!.!|||:!!!:!! !|||!!!|||||||||!!:|||!.!|||| AspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpP 284515 : GATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGC : 284572 37 : roLeuGlnGlnGlnProThrIleLeuGluIleIleValTyrIlePheSerIleAlaIl : 55 |||||...! !|||! !||||||! ||| !! !:!: !! ! !|| roLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIl 284573 : CTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAAT : 284629 56 : eThrThrPheLeuGlnLeuPheMetIleIleProTrpPheLeuSerIleIleThrAla : 74 |!:! !|||||| ! !|||:!::!::!!|||!! !|||!!!! !:!: !! ! eSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAsp 284630 : CAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGAC : 284686 75 : AsnTrpSerPheTyrAspIle<->IleArgThrAlaCysProLeuIlePheValAsnT : 93 !!. .!! ! !|||! |||!:!! ! ! !!||||||! !||| !! ! LysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetM 284687 : AAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGA : 284746 94 : hrIlePheLeuArgTyrLeuLeuLeuLeuPheHisArgAspAlaIleArgSerCysIl : 112 ! ! :!!!:!|||! !:!!|||:!!! !.! !!! ! !||| !!..!|||:! etAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysVa 284747 : TGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGT : 284803 113 : eAsnCysValAlaGluAsp{Tr} >>>> Target Intron 1 >>>> {p}Arg : 120 :!!. !:!! !! !|||{||} 1012 bp {|}! ! lLysAspIleArgAlaAsp{Tr}++ +-{p}Leu 284804 : GAAGGACATTCGTGCGGAC{TG}gt.........................ac{G}CTT : 285839 121 : AsnValValIleAlaGluHisArgGluIleMetLeuThrAsnAlaLysSerGlyArgP : 140 ::: ! |||...|||||||||||| ! !!:!|||!:!! !||||||! SerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgS 285840 : TCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGAT : 285899 141 : hePheGlyMetValSerValAlaPheMetPheSerSerGlyLeuProTyr<->CysVa : 158 !!!.!.!!!: !!!!!!.!!.!||||||!:!|||.!!|||!!! !||| || erLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrVa 285900 : CTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGT : 285956 159 : lMetProLeuLeuLeuProSerProValAsnGluAspAsnValThrIleLysValPhe : 177 ||||||||||! ! ! ! !! !!! !! ! ||||||! !|||:!:!:! ! lMetProLeuCysThrValArgThrGluIleIleAspAsnGluThrValArgSerGln 285957 : GATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAA : 286013 178 : ProAsnProCysGluLeuIlePheValAspValGlnValSerProPheTyrGluValA : 197 !! !||| ! ! ! ! !.!!:!!||| !!::..!||||||! !:!|||:!!! AlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleV 286014 : GCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCG : 286073 198 : laTyrThrLeuAspValPheAlaCysCysValPheTyrThrIlePheCysGlyIleCy : 216 .! ! !:!!.!. !!!.|||...! !|||.!.|||:!!:!! ! !||| !|| alGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCy 286074 : TGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTG : 286130 217 : sSerLeuThrAlaLysPheValMetHisAlaCysGlyGlnCysGluIleLeuMetAsp : 235 |||||||.!!||| !||||||||||||!.!|||||||||! !..!||||||:!! sSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThr 286131 : CAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACA : 286187 236 : PhePheGluLysLeuValAspGly<-><->AspAspLysAsnGluSerThrIleAsnG : 253 .!.!!:||||||||||||||| ! |||... !|||||| !.!.| LysLeuAspLysLeuValAspGlyValLysGlyArgLysGlyLeuSerThrHisGluG 286188 : AAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAAC : 286247 254 : lnArgIleSerAsnValValThrHisHisLeuArgIleLeu{Ly} >>>> Target : 267 |||||:!:.!!:!!:!!:!! !|||||||||!:!||||||{ } 4 lnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 286248 : AACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt........... : 286293 268 : Intron 2 >>>> {s}PheValSerAspValAspLysValLeuAsnGluIleCys : 280 08 bp { }|||:!!|||.!.:!!!!: !:!!||||||||||||||| ++{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCys 286294 : ..............ag{T}TTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATGT : 286736 281 : LeuAlaGluPheLeuAsnSerSerCysAsnIleCysLeuLeuGlyTyrTyrValIle : 299 !!!!.!||| ! :!!..!!!!!!!! |||||||||!!!||||||||||||:!!:!: PheValGluValIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeu 286737 : TTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTACTG : 286795 vulgar: CbirOr4 16 299 . KQ414889.1 284514 286795 + 379 M 65 195 G 0 3 M 37 111 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 37 111 G 0 3 M 87 261 G 0 6 M 23 69 S 0 2 5 0 2 I 0 404 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284515 286795 379 + . gene_id 5 ; sequence CbirOr4 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284515 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284515 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286698 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286795 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286795 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284515 286795 379 + . alignment_id 5 ; Query CbirOr4 ; Align 284515 17 195 ; Align 284713 82 111 ; Align 285839 120 111 ; Align 285953 157 261 ; Align 286220 244 69 ; Align 286700 268 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 362 Query range: 1 -> 269 Target range: 221327 -> 222134 2 : AspGluLeuSerSerGlnAsnValGlnAsnGluGluHisPheLeuAspPheHisTyrA : 21 |||...||||||||| ..!|||:!! ! !!::!! !:!! ! ! ! : AspSerLeuSerSerThrArgValGlu---TyrAspTyrLysThrAsnValLysLeuS 221328 : GACAGTCTGTCTTCGACTCGTGTTGAA---TACGATTACAAGACGAACGTGAAATTGA : 221382 22 : laAlaGlnValSerLeuTrpLeuLeuLysProMetGlyAlaTrpProLeuGlnGlnGl : 40 :!!.!|||:!!|||! !|||:!!|||||||||!!:|||!.!|||||| !..! .! erValGlnLeuSerArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaAs 221383 : GCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAA : 221439 41 : nProThrIleLeuGluIleIleValTyrIlePheSerIleAlaIleThrThrPheLeu : 59 . !:!!! :!!|||! ! !:!!||| .!.! !! !!.!:!! ! ! !||| nIleSerThrValGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLeu 221440 : CATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCTG : 221496 60 : GlnLeuPheMetIleIleProTrpPheLeuSerIleIleThrAlaAsnTrpSerPheT : 79 !|||:!::!::!!|||!! !|||! !:!:||| !! ! ..! !!| IleThrPheLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspValT 221497 : ATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTCT : 221556 80 : yrAspIleIleArgThrAlaCysProLeuIlePheValAsnThrIlePheLeuArgTy : 98 ||:!!! !|||!:! ! ! !!||||||! !||| ! ! ! !||||||!:!|| yrAsnArgIleLysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysTy 221557 : ACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTA : 221613 99 : rLeuLeuLeuLeuPheHisArgAspAlaIleArgSerCysIleAsnCysValAlaGlu : 117 |! !||||||:!!.!!:!!..!:!!! !||||||..!||||||.!. !!:!!! ! ! rHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTrp 221614 : TCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATGG : 221670 118 : AspTrpArgAsnValValIleAlaGluHisArgGluIleMetLeuThrAsnAlaLysS : 137 ||||||!:!|||:!!..! !:!!:!! !!!:!!!:||||||:!! !||||||! ! AspTrpLysAsnIleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIleP 221671 : GATTGGAAGAATATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATTT : 221730 138 : erGlyArgPhePheGlyMetValSerValAlaPheMetPheSerSerGlyLeuProTy : 156 !|||||| !!. !|||:!!!!!..! !||||||!:!|||... ::: || heGlyArgArgLeuIleMetIleCysThrPhePheMetTyrSerGlyPheValPheTy 221731 : TTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGTACAGTggtttcgtttttta : 221787 157 : rCysVal<->MetProLeuLeuLeuProSer<->ProValAsnGluAspAsnValThr : 173 | ::! !!:|||!!! !:!! !!.! |||!.!.!.!!: ||||||||| rTyrIleAlaIleProPheSerValGlyLysIleProAlaGlnAspValAsnValThr 221788 : ttacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaact : 221844 174 : IleLysValPheProAsnProCysGluLeuIlePheValAspValGlnValSerProP : 193 ... !.!. ! !|||! !..! !.!!.!!||||||..!!:! !|||||| PheIleProMetValPheProPheSerArgPheIleValAspThrArgTyrSerProV 221845 : tttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCTG : 221904 194 : heTyrGluValAlaTyrThrLeuAspValPheAlaCysCysValPheTyrThrIlePh : 212 ! !!|||:!! !!:!:!!|||.!.:!!.!.||| !!..!:!!.!.:!!!:!||| alAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleTh 221905 : TAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTAC : 221961 213 : eCysGlyIleCysSerLeuThrAlaLysPheValMetHisAlaCysGlyGlnCysGlu : 231 ! !.! !|||||||||..!|||! !|||!.!:!!||||||||||||||| :!! rSerAlaAlaCysSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMetGln 221962 : ATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCAA : 222018 232 : IleLeuMetAspPhePheGluLysLeuValAspGlyAspAspLysAsnGluSerThrI : 251 :!:||||||..!!::.!.:!! ! |||:!!:!!||| ! ! ! !:!!.!: ValLeuMetSerTrpLeuLysHisLeuIleAsnGlyArgAlaAspMetCysAsnAsnV 222019 : GTGTTGATGAGCTGGCTGAAACATTTGATCAACGGCCGGGCGGATATGTGTAACAACG : 222078 252 : leAsnGlnArgIleSerAsnValValThrHisHisLeuArgIleLeuLysPheVal : 269 !::!!::!||||||:!!!!.:!!|||!.!!!.|||:!!|||||||||:!!!:!||| alAspArgArgIleAlaLysIleValAsnGlnHisValArgIleLeuGlnTyrVal 222079 : TGGATAGGAGAATAGCGAAGATTGTGAATCAACACGTTCGAATATTGCAGTATGTA : 222134 vulgar: CbirOr4 1 269 . KQ414889.1 221327 222134 + 362 M 9 27 G 1 0 M 147 441 G 0 3 M 7 21 G 0 3 M 104 312 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221328 222134 362 + . gene_id 6 ; sequence CbirOr4 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221328 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221328 222134 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221328 222134 362 + . alignment_id 6 ; Query CbirOr4 ; Align 221328 2 27 ; Align 221355 12 441 ; Align 221799 159 21 ; Align 221823 166 312 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 353 Query range: 19 -> 299 Target range: 262849 -> 263770 20 : TyrAlaAlaGlnValSerLeuTrpLeuLeuLysProMetGlyAlaTrpProLeuGlnG : 39 |||::! !|||:!!!:!! !|||||||||||||||!!:|||||||||||||||... TyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerA 262850 : TACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCG : 262907 40 : lnGlnProThrIleLeuGluIleIleValTyrIlePheSerIleAlaIleThrThrPh : 58 ..! !:!!! !:!!||| !|||:!!!::.!!.!!! !|||!.!:!! ! !! laSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCy 262908 : CCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTG : 262964 59 : eLeuGlnLeuPheMetIleIleProTrpPheLeuSerIleIleThrAlaAsnTrpSer : 77 !||| !|||! !! :!!||||||! .!.||| !|||:!! !! ! ! !!:! sLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsn 262965 : TCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAAT : 263021 78 : PheTyrAspIleIleArgThrAlaCysProLeuIlePheValAsnThrIlePheLeuA : 97 |||:!! ! :!:!:!..! ! !!|||||| ! ! !..! !.!.:!!! PheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleA 263022 : TTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCA : 263081 98 : rgTyrLeuLeuLeuLeuPheHisArgAspAlaIleArgSerCysIleAsnCysValAl : 116 .!||| !! !||||||.!!|||!!! ! ! !|||!:!.!!|||:!:.!. !||| snTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGl 263082 : ATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCA : 263138 117 : aGluAspTrpArgAsnValValIleAlaGluHisArgGluIleMetLeuThrAsnAla : 135 !||||||||| !!! !|||..!! !||| !!!:!...|||||||||! !|||||| nGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAla 263139 : GGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCG : 263195 136 : LysSerGlyArgPhePheGlyMetValSerValAlaPheMetPheSerSerGlyLeuP : 155 |||! !||||||!:! ! !.! !!!!!.! !|||||| !!!||| !:!! LysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetC 263196 : AAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGT : 263255 156 : roTyrCysValMetProLeuLeuLeuProSerProValAsnGluAspAsnValThr<- : 174 ! ! |||:!!:!: !! !!!! ! !!..! !:!!.!.!!:! !|||! !||| ysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrAr 263256 : GCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAG : 263312 175 : ><->IleLysValPheProAsnProCysGluLeuIlePheValAspValGlnValSer : 191 :!!::::!!.!.||| !||| ! ! .!!:!! |||.!...!!:! gIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThrAsn 263313 : AATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAAT : 263369 192 : ProPheTyrGluValAlaTyrThrLeuAspValPheAlaCysCysValPheTyrThrI : 211 ||| !!|||:!! ! !.!! !.!. !!.!.:!! !!! !:!! !! !.!!! ProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaT 263370 : CCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGA : 263429 212 : lePheCysGlyIleCysSerLeuThrAlaLysPheValMetHisAlaCysGlyGlnCy : 230 ! ! !||| !! !.!!:!!|||||| !|||!.! |||||||||||||||! hrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLe 263430 : CAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTT : 263486 231 : sGluIleLeuMetAspPhePheGluLysLeuValAsp<->GlyAspAspLysAsnGlu : 248 .!.:!:||||||..!!::.!! !:!!!!!|||:!! ..! |||:!!|||:!! uAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLys 263487 : GAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAG : 263543 249 : SerThrIleAsnGlnArgIleSerAsnValValThrHisHisLeuArgIleLeu{Ly} : 267 !:! ! ! ! ..!|||.!! :!!||| !||||||||||||:!!|||{!.} AsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeu{Se} 263544 : AATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTG{AG} : 263600 268 : >>>> Target Intron 1 >>>> {s}PheValSerAspValAspLysValLe : 276 72 bp {.}|||:!!..! !:!! ! !!.|||:! ++ ++{r}PheIleAspArgIleLysAsnValMe 263601 : gt.........................ag{T}TTCATAGATCGTATTAAGAATGTGAT : 263699 277 : uAsnGluIleCysLeuAlaGluPheLeuAsnSerSerCysAsnIleCysLeuLeuGly : 295 !!:! !||||||!!!!.!|||!!.!!!!!.:!!!!! :!!||||||:!!|||||| tSerThrIleCysPheValGluLeuPheLysAlaThrLeuAspIleCysMetLeuGly 263700 : GAGTACGATATGTTTCGTGGAGTTATTCAAGGCTACGCTGGATATATGCATGCTAGGT : 263756 296 : TyrTyrValIle : 299 ||||||:!!:!! TyrTyrIleLeu 263757 : TACTACATACTT : 263770 vulgar: CbirOr4 19 299 . KQ414889.1 262849 263770 + 353 M 154 462 G 0 6 M 69 207 G 0 3 M 24 72 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262850 263770 353 + . gene_id 7 ; sequence CbirOr4 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262850 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262850 263601 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 263673 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263672 263673 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 263674 263770 . + . KQ414889.1 exonerate:protein2genome:local exon 263674 263770 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262850 263770 353 + . alignment_id 7 ; Query CbirOr4 ; Align 262850 20 462 ; Align 263318 174 207 ; Align 263528 243 72 ; Align 263675 268 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 345 Query range: 26 -> 306 Target range: 212893 -> 214579 27 : TrpLeuLeuLysProMetGlyAlaTrpProLeuGlnGlnGlnProThrIleLeuGluI : 46 |||||||||||||||! !||| !|||||| !:!!... ! !:!! :!!|||! TrpLeuLeuLysProThrGlyLeuTrpProAspLysSerTyrValSerProIleGluL 212894 : TGGCTTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGA : 212951 47 : leIleValTyrIlePheSerIleAlaIleThrThrPheLeuGlnLeuPheMetIleIl : 65 !! !:!! ! !!!. !! !.!!:!! ! ! !||| !!:!:!::!!|| ysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIl 212952 : AAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAAT : 213008 66 : eProTrpPheLeuSerIleIleThrAlaAsnTrpSerPheTyrAspIleIleArgThr : 84 ||||!! !|||! !:!:.!! !! ! :::...::: |||..! ! eProCysSerLeuTyrValPheLeuAspValGluAsnIlePheLysGluIleGluLeu 213009 : ACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaagagaTCGAATTG : 213065 85 : AlaCysProLeuIlePheValAsnThrIlePheLeuArgTyrLeuLeuLeuLeuPheH : 104 ! !! !!!! !||| ! .!! .!.! !!:!|||! !! !|||:!!.!!| PheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuH 213066 : TTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTC : 213125 105 : isArgAspAlaIleArgSerCysIleAsnCysValAlaGluAspTrpArgAsnValVa : 123 || !!|||! !||||||!!!|||:!!.!. !:!! ! ! ||||||!:!|||:!!.. isGlyAspAspIleArgThrCysValGluHisMetLysTyrAspTrpLysAsnIleTh 213126 : ACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCAC : 213182 124 : lIleAlaGluHisArgGluIleMetLeuThrAsnAlaLysSerGlyArgPhePheGly : 142 ! !! !||| !!!:!||||||||| ! !||||||!..! !|||!:! .!.! ! rHisGluGluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleVal 213183 : GCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTG : 213239 143 : MetValSerValAlaPheMetPheSerSerGlyLeuProTyr<->CysValMetProL : 161 ! :!!!!!!.! !||||||!:!!!!.!! ! ! !||| !|||:!:|||: ThrIleCysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuValValProI 213240 : ACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGA : 213299 162 : euLeuLeuProSerProValAsnGluAsp<->AsnValThrIleLysValPheProAs : 179 !! ! ! !!.! !||| |||||| |||||||||.!!!:! !.!. ! leSerAlaAspLysMetValAlaGluAspLeuAsnValThrPheArgGlnMetValVa 213300 : TCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGT : 213356 180 : nProCysGluLeuIlePheValAspValGlnValSerProPheTyrGluValAlaTyr : 198 !||| !..! !.!!.!!|||||||||!:! !|||||| ! !!|||:!! !!:! lProValSerArgPheIleValAspValArgTyrSerProValAsnGluIlePhePhe 213357 : CCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTC : 213413 199 : ThrLeuAspValPheAlaCysCysValPheTyrThrIlePheCysGlyIleCysSerL : 218 !:!!.!.:!!.!.||| ! :!!.!!:!!.!!||| ! ! !||||||| LeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSerL 213414 : TTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCT : 213473 219 : euThrAlaLysPheValMetHisAlaCysGlyGlnCysGluIleLeuMetAspPhePh : 237 ||.!!||| !|||!.!:!:||||||||||||||| ! |||||||||..!!::.! euAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLe 213474 : TGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCT : 213530 238 : eGluLysLeuValAspGlyAspAspLysAsnGluSerThrIleAsnGlnArgIleSer : 256 .||| ! |||:!!|||||| !!: ! ! ...!.!!.!:!::!!.!.||||||:!! uGluHisLeuIleAspGlyArgGluAspMetSerLysAsnValAspAspArgIleAla 213531 : GGAACATTTGATAGACGGTAGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCG : 213587 257 : AsnValValThrHisHisLeuArgIleLeuLysPheValSerAspValAsp >>>> : 274 !:!!|||!.!!!.|||:!!||||||||||||!::||| !!::!! ValIleValAsnGlnHisValArgIleLeuLysTrpVal---GluLeuTrp++ 213588 : GTCATCGTGAACCAGCATGTGCGGATACTGAAGTGGGTG---GAATTGTGGgt..... : 213640 275 : Target Intron 1 >>>> LysValLeuAsnGluIleCysLeuAlaGluPheLeu : 285 843 bp |||!.!|||...:!!:!!! !!!!||||||!!.||| ++LysAlaLeuArgGlnValSerPheAlaGluLeuLeu 213641 : ....................agAAAGCACTTCGGCAAGTATCTTTCGCTGAATTATTA : 214514 286 : AsnSerSerCysAsnIleCysLeuLeuGlyTyrTyrValIleValAspLeuArgAsnH : 305 !!!!!! |||:!!||||||:!!|||||||||:!!|||..!! ! !|||...| ValCysThrValAsnLeuCysLeuValGlyTyrTyrIleIleThrValCysArgGlyH 214515 : GTATGCACGGTGAATCTCTGTCTCGTTGGATATTACATAATAACGGTATGCAGAggac : 214574 306 : isGlu : 306 ||::: isLys 214575 : ataaa : 214579 vulgar: CbirOr4 26 306 . KQ414889.1 212893 214579 + 345 M 130 390 G 0 3 M 14 42 G 0 3 M 99 297 G 1 0 M 3 9 5 0 2 I 0 839 3 0 2 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212894 214579 345 + . gene_id 8 ; sequence CbirOr4 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212894 213637 . + . KQ414889.1 exonerate:protein2genome:local exon 212894 213637 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 213638 213639 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213638 214480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214479 214480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214481 214579 . + . KQ414889.1 exonerate:protein2genome:local exon 214481 214579 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212894 214579 345 + . alignment_id 8 ; Query CbirOr4 ; Align 212894 27 390 ; Align 213287 157 42 ; Align 213332 171 297 ; Align 213629 271 9 ; Align 214481 274 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 343 Query range: 19 -> 299 Target range: 274383 -> 275306 20 : TyrAlaAlaGlnValSerLeuTrpLeuLeuLysProMetGlyAlaTrpProLeuGlnG : 39 |||::! !|||:!!!:!! !|||!!!|||||||||!!:||||||||||||||| . TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaS 274384 : TACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCT : 274441 40 : lnGlnProThrIleLeuGluIleIleValTyrIlePheSerIleAlaIleThrThrPh : 58 .!! !!|||! !!!!||| !|||:!!! !... ||| ::: !! erProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCy 274442 : CGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTG : 274498 59 : eLeuGlnLeuPheMetIleIleProTrpPheLeuSerIleIleThrAlaAsnTrpSer : 77 !!!! !|||! !! :!!|||||| ! .!.!!! !|||||| !!.!:!! ||| sPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGluSer 274499 : CTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGT : 274555 78 : PheTyrAspIleIleArgThrAlaCysProLeuIlePheValAsnThrIlePheLeuA : 97 .!!:!! ! :!:!:! ! ! !!|||||| ! ! ! !! ! ! :!!! LeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleA 274556 : CTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTA : 274615 98 : rgTyrLeuLeuLeuLeuPheHisArgAspAlaIleArgSerCysIleAsnCysValAl : 116 .!||| ! !||||||.!.!.!!!! ! ! !||||||.!!|||:!:.!. !:!! snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 274616 : ATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCA : 274672 117 : aGluAspTrpArgAsnValValIleAlaGluHisArgGluIleMetLeuThrAsnAla : 135 ! !|||||||||! !|||..!! ! !!||| !!!:!:!!:!:||||||! !|||||| nThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsnAla 274673 : AACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCG : 274729 136 : LysSerGlyArgPhePheGlyMetValSerValAlaPheMetPheSerSerGlyLeuP : 155 |||! !||||||!:! !!!.!!!: !!!!!!.!||||||||| !!!.!!! !||| LysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuC 274730 : AAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCT : 274789 156 : roTyrCysValMetProLeuLeuLeuProSerProValAsnGluAspAsnValThrIl : 174 !|||||||||!!: !! !!!! ! !..! !!|||.!.! !! |||! !|||! ysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrAr 274790 : GTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAG : 274846 175 : eLysValPheProAsnProCysGluLeuIle<-><->PheValAspValGlnValSer : 191 !! ||| ! ! ||||||:!! ! ! .!!|||! |||.!...!||| gThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThrSer 274847 : AACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGT : 274903 192 : ProPheTyrGluValAlaTyrThrLeuAspValPheAlaCysCysValPheTyrThrI : 211 ||| !!|||:!!!.! !.!!! !.!. !! ! :!! ! ! !:!! ! !!:!!! ProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerS 274904 : CCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGA : 274963 212 : lePheCysGlyIleCysSerLeuThrAlaLysPheValMetHisAlaCysGlyGlnCy : 230 ! !||| !! !||||||.!!||| !|||!.! ||||||! !||||||! erAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLe 274964 : GCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTT : 275020 231 : sGluIleLeuMetAspPhePheGluLysLeuValAsp<->GlyAspAspLysAsnGlu : 248 ...:!:|||||| !::.!! :!!!!!|||:!! ..! |||:::|||::: uSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsnLys 275021 : GAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaa : 275077 249 : SerThrIleAsnGlnArgIleSerAsnValValThrHisHisLeuArgIleLeu{Ly} : 267 :::... .....!|||.!! |||||| !||||||||||||:!!|||{!.} AsnValTyrPheSerGluIleGlyValValValGluHisHisLeuArgValLeu{Se} 275078 : aatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTC{AG} : 275134 268 : >>>> Target Intron 1 >>>> {s}PheValSerAspValAspLysValLe : 276 74 bp {.}|||:!!:!! !:!!!!: ! |||:! ++ ++{r}PheIleAlaArgIleGluAspValMe 275135 : gt.........................ag{T}TTCATAGCACGTATCGAGGATGTGAT : 275235 277 : uAsnGluIleCysLeuAlaGluPheLeuAsnSerSerCysAsnIleCysLeuLeuGly : 295 !|||..!||||||!!! !|||!!.!!!!!.!!!!!! :!!!!:|||:!!|||||| tAsnArgIleCysPheMetGluLeuPheLysCysThrLeuAspMetCysMetLeuGly 275236 : GAATCGAATATGCTTCATGGAATTGTTCAAGTGTACTCTGGATATGTGCATGCTTGGC : 275292 296 : TyrTyrValIle : 299 ||||||:!!:!! TyrTyrIleLeu 275293 : TATTACATTCTC : 275306 vulgar: CbirOr4 19 299 . KQ414889.1 274383 275306 + 343 M 165 495 G 0 6 M 58 174 G 0 3 M 24 72 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274384 275306 343 + . gene_id 9 ; sequence CbirOr4 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274384 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274384 275135 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274384 275306 343 + . alignment_id 9 ; Query CbirOr4 ; Align 274384 20 495 ; Align 274885 185 174 ; Align 275062 243 72 ; Align 275211 268 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 339 Query range: 19 -> 300 Target range: 259772 -> 260881 20 : TyrAlaAlaGlnValSerLeuTrpLeuLeuLysProMetGlyAlaTrpProLeuGlnG : 39 |||::! !||| !!!:!! !|||!!!|||||||||!!:||||||||||||! !..!. TyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerS 259773 : TATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCAT : 259830 40 : lnGlnProThrIleLeuGluIleIleValTyrIlePheSerIleAlaIleThrThrPh : 58 ..... !!|||! !||||||! |||:!!! !:!!.!! !||| !||| ! ! erSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSe 259831 : CCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAG : 259887 59 : eLeuGlnLeuPheMetIleIleProTrpPheLeuSerIleIleThrAlaAsnTrpSer : 77 ! ! !||| !!! :!:||||||!! ! ||| !!!::!! !! !!!. !||| rThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSer 259888 : TACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGT : 259944 78 : PheTyrAspIleIleArgThrAlaCysProLeuIlePheValAsnThrIlePheLeuA : 97 !!.||| ! !! !:!..! ! !!||||||! ! ! ! !..! !! !:!!! LeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleA 259945 : TTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTA : 260004 98 : rgTyrLeuLeuLeuLeuPheHisArgAspAlaIleArgSerCysIleAsnCysValAl : 116 .!||| ! !||||||!!.... !! ! !|||! !||||||:!:.!. !|||! snTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGl 260005 : ATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGA : 260061 117 : aGluAspTrpArgAsnValValIleAlaGluHisArgGluIleMetLeuThrAsnAla : 135 !.!.|||||||||! !:!!..!! ! !:!! !!!:!.!.:!:||||||! ! !!||| uAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAla 260062 : GAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCG : 260118 136 : LysSerGlyArgPhePheGlyMetValSerValAlaPheMetPheSerSerGlyLeuP : 155 |||! !||||||!:! !!!.! !!!!!.!||||||:!! .!!.!!! !||| LysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuC 260119 : AAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGT : 260178 156 : roTyrCysValMetProLeuLeuLeuProSerProValAsnGluAspAsnValThrIl : 174 !!:!|||:!!:!: !!:!!||| ! !!..! !:!!.!.! !! |||! !|||! ysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrAr 260179 : GCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAG : 260235 175 : eLysValPheProAsnProCysGluLeuIle<-><->PheValAspValGlnValSer : 191 ! ||| !! ! ||||||! !:!! ! .!.:!!:!!|||.!.! !||| gIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSer 260236 : GATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGT : 260292 192 : ProPheTyrGluValAlaTyrThrLeuAspValPheAlaCysCysValPheTyrThrI : 211 |||.!. !!|||:!!!.! !..!:!!.!. !! !!:!! ! ! !:!! ! !!:!!! ProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerS 260293 : CCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGA : 260352 212 : lePheCysGlyIleCysSerLeuThrAlaLysPheValMetHisAlaCysGlyGlnCy : 230 ! ! !||||||! !||||||.!!||| .!...! |||||||||||||||! erThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLe 260353 : GCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTT : 260409 231 : sGluIleLeuMetAspPhePheGluLysLeuValAsp<->GlyAspAspLysAsnGlu : 248 .!.:!:||||||!!:!::.!! !:!!!!!|||||| ..! :!!!:!!!.:!! uAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLys 260410 : GAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAA : 260466 249 : SerThrIleAsnGlnArgIleSerAsnValValThrHisHisLeuArgIleLeu{Ly} : 267 !.!.!! ! !:!!..!|||.!! :!!||| !|||||||||||| !|||{! } LysAlaProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeu{Th} 260467 : AAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC{AC} : 260523 268 : >>>> Target Intron 1 >>>> {s}PheValSerAspValAspLysValLe : 276 257 bp { }|||:!!||| !:!!!!: ! |||:! ++ ++{r}PheIleSerArgIleGluAspValMe 260524 : gt.........................ag{C}TTCATATCGCGTATCGAGGATGTGAT : 260807 277 : uAsnGluIleCysLeuAlaGluPheLeuAsnSerSerCysAsnIleCysLeuLeuGly : 295 !|||..!||||||!!! !|||!!.!!!!..!!!!!! :!!||||||||||||||| tAsnArgIleCysPheLeuGluLeuPheArgCysThrLeuAspIleCysLeuLeuGly 260808 : GAACCGGATATGCTTCCTGGAGTTGTTCAGGTGCACTCTGGATATATGTCTACTTGGC : 260864 296 : TyrTyrValIleVal : 300 ||||||:!!:!!:!! TyrTyrIleLeuMet 260865 : TACTATATTCTTATG : 260881 vulgar: CbirOr4 19 300 . KQ414889.1 259772 260881 + 339 M 165 495 G 0 6 M 58 174 G 0 3 M 24 72 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259773 260881 339 + . gene_id 10 ; sequence CbirOr4 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259773 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259773 260524 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259773 260881 339 + . alignment_id 10 ; Query CbirOr4 ; Align 259773 20 495 ; Align 260274 185 174 ; Align 260451 243 72 ; Align 260783 268 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 330 Query range: 19 -> 299 Target range: 256652 -> 257577 20 : TyrAlaAlaGlnValSerLeuTrpLeuLeuLysProMetGlyAlaTrpProLeuGlnG : 39 |||::! !|||:!!!:!! !|||!!!|||||||||!!:||||||||||||! !..!. TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerS 256653 : TACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGT : 256710 40 : lnGlnProThrIleLeuGluIleIleValTyrIlePheSerIleAlaIleThrThrPh : 58 .!... !!|||! !|||||| !! !|||! ||| !!! !! ! !:!! ! ! erSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGl 256711 : CGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGG : 256767 59 : eLeuGlnLeuPheMetIleIleProTrpPheLeuSerIleIleThrAlaAsnTrpSer : 77 !! ! !||||||! :!:||||||!! !!.||| !:!!.!! !! !:!! ||| ySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSer 256768 : TTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGT : 256824 78 : PheTyrAspIleIleArgThrAlaCysProLeuIlePheValAsnThrIlePheLeuA : 97 |||||| ::::::... |||:!!! ! ! !! !! !! !! ! !! PheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaA 256825 : TTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCA : 256884 98 : rgTyrLeuLeuLeuLeuPheHisArgAspAlaIleArgSerCysIleAsnCysValAl : 116 .!||| !|||||||||!!.!!. !! ! ! !||||||! !|||:!!.!. !:!!! snTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGl 256885 : ATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGA : 256941 117 : aGluAspTrpArgAsnValValIleAlaGluHisArgGluIleMetLeuThrAsnAla : 135 ! !|||||||||! ||| !! ! !:!! !!!:!:!!:!:|||:!!! !|||||| uThrAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAla 256942 : AACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCG : 256998 136 : LysSerGlyArgPhePheGlyMetValSerValAlaPheMetPheSerSerGlyLeuP : 155 !:!! !||||||!:! ! !.!! !!!!!!.!|||.!!||| |||.!! ... ArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheC 256999 : AGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttct : 257058 156 : roTyrCysValMetProLeuLeuLeuProSerProValAsnGluAspAsnValThr<- : 174 ::: ||| ! !! !||| ! !!..! !:!!:!!! !! |||! !||| ysPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrTh 257059 : gtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAAC : 257115 175 : ><->IleLysValPheProAsnProCysGluLeuIlePheValAspValGlnValSer : 191 :!:::!|||.!.||| ! !! ! !! .!.:!!:!!|||.!. !||| rIleValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSer 257116 : GATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGT : 257172 192 : ProPheTyrGluValAlaTyrThrLeuAspValPheAlaCysCysValPheTyrThrI : 211 ||| !!|||:!!!.! ! !:!!.!...!!:::!!! !:!! !|||! ProThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrS 257173 : CCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTA : 257232 212 : lePheCysGlyIleCysSerLeuThrAlaLysPheValMetHisAlaCysGlyGlnCy : 230 ! !.!!|||! !||||||.!!||| |||!.!! ||||||! !||||||! erThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLe 257233 : GTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTT : 257289 231 : sGluIleLeuMetAspPhePheGluLysLeuValAspGlyAspAspLysAsnGluSer : 249 :!:||||||...!::.!. !:!!!!!|||:!!! !... !!....|||... uThrValLeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLys 257290 : GACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaa : 257346 250 : ThrIleAsn<->GlnArgIleSerAsnValValThrHisHisLeuArgIleLeu{Ly} : 267 |||... :!!!:!|||.!! :!!||| !||||||||||||:!:|||{!.} ThrPheProPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Se} 257347 : acgtttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG} : 257403 268 : >>>> Target Intron 1 >>>> {s}PheValSerAspValAspLysValLe : 276 76 bp {.}|||:!!||| !!:!!!!::!!|||:! ++ ++{r}PheIleSerTyrIleGluGluValMe 257404 : gt.........................ag{T}TTCATATCATATATCGAGGAAGTGAT : 257506 277 : uAsnGluIleCysLeuAlaGluPheLeuAsnSerSerCysAsnIleCysLeuLeuGly : 295 !|||..!||||||!!! !|||!!.!!!!..!!!!!! !||||||:!!|||||| tAsnArgIleCysPheLeuGluLeuPheArgCysThrLeuAlaIleCysMetLeuGly 257507 : GAACCGAATATGTTTTTTAGAGTTGTTTAGATGCACGCTGGCTATATGCATGCTGGGA : 257563 296 : TyrTyrValIle : 299 ||||||:!!:!! TyrTyrIleLeu 257564 : TACTACATTCTT : 257577 vulgar: CbirOr4 19 299 . KQ414889.1 256652 257577 + 330 M 154 462 G 0 6 M 79 237 G 0 3 M 14 42 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256653 257577 330 + . gene_id 11 ; sequence CbirOr4 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256653 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256653 257404 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257577 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257577 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256653 257577 330 + . alignment_id 11 ; Query CbirOr4 ; Align 256653 20 462 ; Align 257121 174 237 ; Align 257361 253 42 ; Align 257482 268 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 319 Query range: 16 -> 265 Target range: 204227 -> 204974 17 : AspPheHisTyrAlaAlaGlnValSerLeuTrpLeuLeuLysProMetGlyAlaTrpP : 36 |||.!....||||||.!!!:: !! ! ! !:!!||| ! !:!:|||||||||| AspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaTrpP 204228 : GACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGTGGC : 204285 37 : roLeuGlnGlnGlnProThrIleLeuGluIleIleValTyrIlePheSerIleAlaIl : 55 ||:!!! ! !.!. !!:!! !!! !! :!!||| !.!...! !!.!:! roIleProValAsnSerSerProPheThrArgLeuValArgArgIleGluHisValVa 204286 : CGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGTAGT : 204342 56 : eThrThrPheLeuGlnLeuPheMetIleIleProTrpPheLeuSerIleIleThrAla : 74 !||| |||||| ......||||||:!!||| ! .!!|||! !:!:.!! ! ! lThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheLeuLys 204343 : CACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTGAAG : 204399 75 : AsnTrpSerPheTyrAspIleIleArgThrAlaCysProLeuIlePheValAsnThrI : 94 .!. !!:! ! ! ! !:!:!:!! ! ! ! |||:!!:!: ! !!:!! ! GluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSerIleG 204400 : GAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCATAC : 204459 95 : lePheLeuArgTyrLeuLeuLeuLeuPheHisArgAspAlaIleArgSerCysIleAs : 113 |||!!!!:!|||! !:!!:!!|||!:!!..! !||| !|||!:!!.! !!:!:|| lnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSerLeuAs 204460 : AGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGTTTGAA : 204516 114 : nCysValAlaGluAspTrpArgAsnValValIleAlaGluHisArgGluIleMetLeu : 132 | !:!! !...||||||! !.!.!.!..! ! !|||:!!||| !|||.!.! ! nThrIleArgArgAspTrpIleGluAlaThr---AspGluAsnArgLeuIlePheArg 204517 : CACCATCAGACGCGACTGGATAGAGGCTACG---GATGAAAATCGGTTGATTTTCCGC : 204570 133 : ThrAsnAlaLysSerGlyArgPhePheGlyMetValSerValAlaPheMetPheSerS : 152 :!!!!.||||||! !|||||| ! !:!!:!!:!!!.!||| !|||!:!.!!. SerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetTyrGlyG 204571 : TCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGTACGGCG : 204630 153 : erGlyLeuProTyr<->CysValMetProLeuLeuLeuProSerProValAsnGluAs : 170 !!|||||| !||| :!!:!:||||||||| ! !!!! !|||!.. || lyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleValThrProAs 204631 : GTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTAACACCTGA : 204687 171 : pAsnValThrIleLysValPheProAsnProCysGluLeuIlePheValAspValGln : 189 |||||||||||||!:! !!!.||| !||| ! ...:::||| :::! !||| pAsnValThrIleArgProLeuProCysProValTyrPheValPhePheAsnGluGln 204688 : TAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaacGAGCAA : 204744 190 : ValSerProPheTyrGluValAlaTyrThrLeuAspValPheAlaCysCysValPheT : 209 !|||||| !||||||:!!!.!!:!! !|||.!.:!!.!.||| !!! !||| !| ArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheValThrT 204745 : CGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTGTTACTT : 204804 210 : yrThrIlePheCysGlyIleCysSerLeuThrAlaLysPheValMetHisAlaCysGl : 228 ||.!!:!!.!! !!|||! !|||.!!:!! !||| !||||||:!:|||||||||.! yrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAlaCysSe 204805 : ACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGCGTGCAG : 204861 229 : yGlnCysGluIleLeuMetAspPhePheGluLysLeuValAspGlyAspAspLysAsn : 247 !..! ..!||||||:!!:!! .!..!. !||||||||| !! |||! !!.! rMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAlaAspMetThr 204862 : CATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCGGACATGACC : 204918 248 : GluSerThrIleAsnGlnArgIleSerAsnValValThrHisHisLeuArgIle : 265 |||!!! !:!::!!::!!:!|||:!!:!!:!!||| !:!!!!. !!:!||| GluThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrLysIle 204919 : GAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGAAGATA : 204974 vulgar: CbirOr4 16 265 . KQ414889.1 204227 204974 + 319 M 107 321 G 1 0 M 32 96 G 0 3 M 109 327 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204228 204974 319 + . gene_id 12 ; sequence CbirOr4 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204228 204974 . + . KQ414889.1 exonerate:protein2genome:local exon 204228 204974 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 204228 204974 319 + . alignment_id 12 ; Query CbirOr4 ; Align 204228 17 321 ; Align 204549 125 96 ; Align 204648 157 327 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 299 Query range: 16 -> 270 Target range: 232450 -> 233218 17 : AspPheHisTyrAlaAlaGlnValSerLeuTrpLeuLeuLysProMetGlyAlaTrpP : 36 |||!:!.!.|||::! !||||||!:!! !|||!!!|||! !|||||||||||||||| AspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpP 232451 : GACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGC : 232508 37 : roLeuGlnGlnGlnProThrIleLeuGluIleIleValTyrIlePheSerIleAlaIl : 55 ||! ! !:!! !!:!!! ! !:!! !:!!:!! ! !.!.! !! ! !! roArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuTh 232509 : CGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCAC : 232565 56 : eThrThrPheLeuGlnLeuPheMetIleIleProTrpPheLeuSerIleIleThrAla : 74 ! ! !! !|||..!:!!! ! !|||:!!|||!! .!!|||! !|||:!: !! ! rCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGlu 232566 : CTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAA : 232622 75 : AsnTrpSerPheTyrAspIleIleArgThrAlaCysProLeuIlePheValAsnThrI : 94 :!! !|||.!. ! !!:! !!:!:!:!! ! !!|||:!!! ! ! !! ! ! AspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetG 232623 : GACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGG : 232682 95 : lePheLeuArgTyrLeuLeuLeuLeuPheHisArgAspAlaIleArgSerCysIleAs : 113 ! |||!.!|||! !! !|||||| ! !:!!! !|||! !! !|||:!:.! lyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGl 232683 : GTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGA : 232739 114 : nCysValAlaGluAspTrpArgAsnValValIleAlaGluHisArgGluIleMetLeu : 132 . ||| !:!!||||||||||||||| !! ! !!! ||||||!!::!:|||||| uGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeu 232740 : ACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTG : 232796 133 : ThrAsnAlaLysSerGlyArgPhePheGlyMetValSerValAlaPheMetPheSerS : 152 ! !||||||||| !||||||! .!.!.! :!!:!!!.! !! !||| !!!!. LysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrG 232797 : AAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCG : 232856 153 : erGlyLeuProTyrCysValMetProLeuLeuLeuProSerProValAsnGluAspAs : 171 !!! ! ! !! !! :!!:!: !! !|||! ! !||| !! !! !!! !! || lyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAs 232857 : GTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAA : 232913 172 : nValThrIleLysValPheProAsnProCysGluLeuIle<-><->PheValAspVal : 188 |! !!:! !..!:!!!:!||| |||||| !!!! ! .!.:!!|||..! nGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThr 232914 : CGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACC : 232970 189 : GlnValSerProPheTyrGluValAlaTyrThrLeuAspValPheAlaCysCysValP : 208 ::! !!|||||| !!|||:!! !!:!..!|||.!. !.!!:!! ! ! !:!! ArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleV 232971 : AGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCG : 233030 209 : heTyrThrIlePheCysGlyIleCysSerLeuThrAlaLysPheValMetHisAlaCy : 227 ! !!:!!:!! ! ||| !|||.!!||| !||| .!.!.!||||||||||| alAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCy 233031 : TGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTG : 233087 228 : sGlyGlnCysGluIleLeuMetAspPhePheGluLysLeuValAspGlyAspAspLys : 246 ||||||| .!.:!::!!|||... !!.!!: ! |||||||||!.! ! ! :!! sGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGlyGln 233088 : CGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAG : 233144 247 : AsnGluSerThrIleAsnGlnArgIleSerAsnValValThrHisHisLeuArgIleL : 266 .!.|||!!!..! .!.::!!:!:!!.!! !:!!||| !||||||||||||! !| GluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrL 233145 : GAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACAT : 233204 267 : euLysPheValSer : 270 ||!:!!:!:!!||| euArgTyrLeuSer 233205 : TAAGGTATTTGTCT : 233218 vulgar: CbirOr4 16 270 . KQ414889.1 232450 233218 + 299 M 168 504 G 0 6 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232451 233218 299 + . gene_id 13 ; sequence CbirOr4 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232451 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232451 233218 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232451 233218 299 + . alignment_id 13 ; Query CbirOr4 ; Align 232451 17 504 ; Align 232961 185 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 290 Query range: 19 -> 267 Target range: 266637 -> 267390 20 : TyrAlaAlaGlnValSerLeuTrpLeuLeuLysProMetGlyAlaTrpProLeuGlnG : 39 |||::! !|||:!!!:!! !|||!!!|||||||||!!:||||||||||||! ! !. TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuS 266638 : TACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGT : 266695 40 : lnGlnProThrIleLeuGluIleIleValTyrIlePheSerIleAlaIleThrThrPh : 58 .!! !!:!!! !|||||| !||||||! ! ! !! !|||!.!||| ! !! erLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCy 266696 : CACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTG : 266752 59 : eLeuGlnLeuPheMetIleIleProTrpPheLeuSerIleIleThrAlaAsnTrpSer : 77 !! ! !||||||! :!!||||||!! !!.!!! !:!!:!! !! !:!! !||| sSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSer 266753 : CTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGT : 266809 78 : PheTyrAspIleIleArgThrAlaCysProLeuIlePheValAsnThrIlePheLeuA : 97 .!! ! ! !:!:!:!..! ! !!||||||! ! ! ! !..! ! :!!! IleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleA 266810 : ATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTA : 266869 98 : rgTyrLeuLeuLeuLeuPheHisArgAspAlaIleArgSerCysIleAsnCysValAl : 116 .!||| ! !||||||.!.!.!!!! ! ! !||||||.!!|||:!!.!. !:!! snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 266870 : ACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCA : 266926 117 : aGluAspTrpArgAsnValValIleAlaGluHisArgGluIleMetLeuThrAsnAla : 135 ! !|||||||||! !|||..!! ! !!||| !!!:!:!!:!:||||||! !|||||| nThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAla 266927 : AACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCG : 266983 136 : LysSerGlyArgPhePheGlyMetValSerValAlaPheMetPheSerSerGlyLeuP : 155 !:!! !||||||!:!.!!!.!!!: !!!!!!.!||||||||| !!!.!!! !||| ArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuG 266984 : AGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCG : 267043 156 : roTyrCysValMetProLeuLeuLeuProSerProValAsnGluAspAsnValThrIl : 174 !|||||||||!!: !! !!!! ! !..! !!|||.!.! ! !|||! !|||! lyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrAr 267044 : GCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAG : 267100 175 : eLysValPheProAsnProCysGluLeuIle<-><->PheValAspValGlnValSer : 191 ! ||| !! ! ||||||! !:!! ! .!.:!!! |||.!...!||| gIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSer 267101 : GATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGC : 267157 192 : ProPheTyrGluValAlaTyrThrLeuAspValPheAlaCysCysValPheTyrThrI : 211 ||| !!|||:!!!.! !..!! !.!. !! ! :!! ! ! !:!! ! !!:!!! ProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerS 267158 : CCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGA : 267217 212 : lePheCysGlyIleCysSerLeuThrAlaLysPheValMetHisAlaCysGlyGlnCy : 230 ! !! !||| !! !||||||.!!||| !|||!.! ||||||||||||||| erValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLe 267218 : GCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCT : 267274 231 : sGluIleLeuMetAspPhePheGluLysLeuValAsp<->GlyAspAspLysAsnGlu : 248 ...:!:|||||| !::.!!:!!:!!!!!|||:!! ..! |||!..|||:!! uSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLys 267275 : GAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAG : 267331 249 : SerThrIleAsnGlnArgIleSerAsnValValThrHisHisLeuArgIleLeuLys : 267 !:!..! ! !.!.!:!|||.!! |||||| !||||||||||||:!!|||!:! AsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeuArg 267332 : AACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGAGG : 267390 vulgar: CbirOr4 19 267 . KQ414889.1 266637 267390 + 290 M 165 495 G 0 6 M 58 174 G 0 3 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266638 267390 290 + . gene_id 14 ; sequence CbirOr4 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266638 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266638 267390 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266638 267390 290 + . alignment_id 14 ; Query CbirOr4 ; Align 266638 20 495 ; Align 267139 185 174 ; Align 267316 243 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 114 -> 267 Target range: 304413 -> 304869 115 : ValAlaGluAspTrpArgAsnValValIleAlaGluHisArgGluIleMetLeuThrA : 134 :!!:!! ! !::..!.!.|||! ! ! !..! !!||||||!!:||||||! ! LeuSerThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysT 304414 : CTCTCTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAAT : 304471 135 : snAlaLysSerGlyArgPhePheGlyMetValSerValAlaPheMetPheSerSerGl : 153 !!!.!:!!! !|||||| !.!. !!!::!!!!!!.! !||||||!:!!!!.!!|| yrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGl 304472 : ACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGG : 304528 154 : yLeuProTyr<->CysValMetProLeuLeuLeuProSerProValAsnGluAspAsn : 171 | ! !||| ||||||! !!!! ! ! !!!! !|||:!!||| !!||| yThrIleTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsn 304529 : CACCATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAAT : 304585 172 : ValThrIleLysValPheProAsnProCysGluLeuIlePheValAspValGlnValS : 191 !||||||||| !.!! ! !!||| ! ! ! !!!. !!|||||||||..!| ArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrS 304586 : CGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAA : 304645 192 : erProPheTyrGluValAlaTyrThrLeuAspValPheAlaCysCysValPheTyrTh : 210 |||||.!!||||||:!!!.!||| !:!! !! !.!...! ! ! !|||.!!|||:! erProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSe 304646 : GCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTC : 304702 211 : rIlePheCysGlyIleCysSerLeuThrAlaLysPheValMetHisAlaCysGlyGln : 229 !||| !..!||| !|||.!!|||.!!||| |||!.!! ||||||||||||||| rIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGln 304703 : TATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAA : 304759 230 : CysGluIleLeuMetAspPhePheGluLysLeuValAspGlyAspAspLysAsnGluS : 249 !!!:|||:!!|||..! !!.! ! |||||| :!!..!|||.!...!| IleAspIleValMetSerArgLeuGlyAspLeuVal------AsnSerLysGluSerS 304760 : ATTGATATCGTTATGTCTCGATTGGGTGATCTTGTC------AACAGCAAAGAATCAT : 304813 250 : erThrIleAsnGlnArgIleSerAsnValValThrHisHisLeuArgIleLeuLys : 267 || !:!!:!!:!!|||:!!! !.!.:!!||| !||||||||||||||||||!:! erAspLeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIleLeuArg 304814 : CTGATTTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTAAGG : 304869 vulgar: CbirOr4 114 267 . KQ414889.1 304413 304869 + 205 M 42 126 G 0 3 M 85 255 G 2 0 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304414 304869 205 + . gene_id 15 ; sequence CbirOr4 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304414 304869 . + . KQ414889.1 exonerate:protein2genome:local exon 304414 304869 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 304414 304869 205 + . alignment_id 15 ; Query CbirOr4 ; Align 304414 115 126 ; Align 304543 157 255 ; Align 304798 244 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 197 Query range: 263 -> 391 Target range: 224128 -> 224658 264 : ArgIleLeuLysPheValSerAspValAspLysValLeuAsnGluIleCysLeuAlaG : 283 !:! !! !!:!|||:!!!!! !!..!!!:|||!.!|||.!.:!!:!!! !!!!.!| LysCysCysArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValG 224129 : AAATGTTGCAGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGG : 224186 284 : luPheLeuAsnSerSerCysAsnIleCysLeuLeuGlyTyrTyrValIleValAspLe : 302 ||||||||..!!!!! !! ||||||||||||||||||||||||||||||||| :! luPheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleVal---Va 224187 : AATTTCTAGGCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTG---GT : 224240 303 : uArg{As} >>>> Target Intron 1 >>>> {n}HisGluProMetIleGln : 310 !|||{||} 84 bp {|} ... !:!:! !... lArg{As}+- ++{n}SerSerHisLeuThrSer 224241 : ACGA{AA}ga.........................ag{t}tcgagtcATTTAACTAGC : 224348 311 : IlePheValTyrPheValAlaCysValSerIleThrPheAsnIleTyrIlePheCysT : 330 ! ..!||||||:!! ! !:!!|||:::||||||||||||:::|||||||||| AlaValThrTyrPheIleLeuLeuMetSerLeuThrPheAsnIlePheIlePheCysT 224349 : GCGGTGACTTACTTCATACTACTCATGTCtcttactttcaatatttttatattttgtt : 224408 331 : yrIleGlyGluGlnLeuValAspArgAlaGln{L} >>>> Target Intron 2 : 341 |||||||||||! !:!!!.!!!::::...:::{|} 65 bp yrIleGlyGluLeuValAlaGluGlnValLys{L}-+ 224409 : acatAGGAGAGCTGGTAGCTGAAcaggtgaaa{a}at..................... : 224444 342 : >>>> {ys}IleGlyThrThrCysTyrMetIleGluTrpTyrGlnLeuProAsnAsp : 357 {||}|||||| !..!! |||||||||!!:||||||!:!||| !!...:!! +-{ys}IleGlyGlnValSerTyrMetIleAspTrpTyrArgLeuThrGlyAsn 224445 : ....aa{aa}attggacaAGTGTCGTACATGATCGACTGGTATCGGTTGACTGGAAAT : 224554 358 : LysAlaArgSerMetIlePheProIleIleMetSerSerTyrProIleGluLeuThrA : 377 ||| !! !!!! |||.!. !||| ||||||!:!! ! !!|||:!!||||||| LysLysLeuCysCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrA 224555 : AAGAAACTATGCTGCATTCTGATAATCGCGATGTCCAATTCTTCGATAAAATTGACAG : 224614 378 : laGlyLysMetLeuLysMetThrMetSerSerPheSerAsnIle : 391 |||||!!.|||:!!:!!:!! !:!:!!!!!!|||.!!:!!:!! laGlyAsnMetValGluLeuCysLeuThrThrPheGlyAspVal 224615 : CGGGAAACATGGTCGAACTGTGTCTAACCACTTTCGGTGACGTA : 224658 vulgar: CbirOr4 263 391 . KQ414889.1 224128 224658 + 197 M 37 111 G 1 0 M 2 6 S 0 2 5 0 2 I 0 80 3 0 2 S 1 1 M 36 108 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224129 224658 197 + . gene_id 16 ; sequence CbirOr4 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224129 224247 . + . KQ414889.1 exonerate:protein2genome:local exon 224129 224247 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 224248 224249 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 224248 224331 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224330 224331 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224332 224441 . + . KQ414889.1 exonerate:protein2genome:local exon 224332 224441 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224442 224443 . + . intron_id 2 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local intron 224442 224506 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 224505 224506 . + . intron_id 1 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 224507 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224507 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224129 224658 197 + . alignment_id 16 ; Query CbirOr4 ; Align 224129 264 111 ; Align 224240 302 6 ; Align 224333 305 108 ; Align 224509 342 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 191 Query range: 341 -> 405 Target range: 206251 -> 207604 342 : IleGlyThrThrCysTyrMetIleGluTrpTyrGlnLeuProAsnAspLysAlaArgS : 361 :!:||| !|||! !! !! !:!:.!.||||||!::||||||||| ! ||||||| ValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgS 206252 : GTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCT : 206309 362 : erMetIlePheProIleIleMetSerSerTyrProIleGluLeuThrAlaGlyLysMe : 380 ||||||||.!. !||| !||||||!:!|||||||||:!!||||||||||||||||| erMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMe 206310 : CTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAAT : 206366 381 : tLeuLysMetThrMetSerSerPheSerAsn >>>> Target Intron 1 >>>> : 391 |!!!:!!|||:!!:!::!!||||||!!!:!! 1161 bp tPheGluMetSerLeuAlaSerPheThrAsp++ 206367 : GTTCGAAATGTCTTTAGCTAGTTTCACCGATgt......................... : 206401 392 : IleLeuLysIleSerMetThrTyrPheAsnLeuLeuArgGluVal : 405 :!!:!!|||:!::!!||| !|||||||||:!!|||||||||||| ++ValMetLysValAlaMetGlyTyrPheAsnIleLeuArgGluVal 206402 : agGTAATGAAGGTGGCGATGGGATACTTCAACATACTCCGTGAAGTC : 207604 vulgar: CbirOr4 341 405 . KQ414889.1 206251 207604 + 191 M 49 147 5 0 2 I 0 1157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206252 207604 191 + . gene_id 17 ; sequence CbirOr4 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206252 206398 . + . KQ414889.1 exonerate:protein2genome:local exon 206252 206398 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206399 206400 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206399 207559 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 207558 207559 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 207560 207604 . + . KQ414889.1 exonerate:protein2genome:local exon 207560 207604 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206252 207604 191 + . alignment_id 17 ; Query CbirOr4 ; Align 206252 342 147 ; Align 207560 391 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 189 Query range: 19 -> 276 Target range: 236852 -> 237626 20 : TyrAlaAlaGlnValSerLeuTrpLeuLeuLysProMetGlyAlaTrpProLeuGlnG : 39 |||::! !||| !!:!! !||| !:!!||| !!!:|||.!!|||||| ||| TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpPro---GlnP 236853 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCA---CAGT : 236907 40 : lnGlnProThrIleLeuGluIleIleValTyrIlePheSerIleAlaIleThrThrPh : 58 ..! !!!.!:!! !..!! !||| ! |||!!.!:!:!: ! ! !||| heSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAl 236908 : TCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGC : 236964 59 : eLeuGlnLeuPheMetIleIleProTrpPheLeuSerIleIleThrAlaAsnTrpSer : 77 :!! |||||| !|||||||||!! ! ||| !:!!!!: !! !!!. !!!!! aIle---LeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThr 236965 : AATA---CTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACT : 237018 78 : PheTyrAspIleIleArgThrAlaCysProLeuIlePheValAsnThrIlePheLeuA : 97 |||||| ! !:!:!:!! ! ! !! !!|||! ! ! ! ! !.!!:!!! PheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleS 237019 : TTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCA : 237078 98 : rgTyrLeuLeuLeuLeuPheHisArgAspAlaIleArgSerCysIleAsnCysValAl : 116 !!||| !:!!||||||.!.!..||| ! .!!|||||| !! !.!!||| !:!!! erTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGl 237079 : GTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGA : 237135 117 : aGluAspTrpArgAsnValValIleAlaGluHisArgGluIleMetLeuThrAsnAla : 135 ! |||||||||!....!... ||| :::|||:::||||||! ! !!||| uThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAla 237136 : GACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCG : 237192 136 : LysSerGlyArgPhePheGlyMetValSerValAlaPheMetPheSerSerGlyLeuP : 155 |||! !.!!|||!:! !.!!!: !!!!..! !|||!!: !.!!.!! !||| LysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuG 237193 : AAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTG : 237252 156 : roTyrCysValMetProLeuLeuLeuProSerProValAsnGluAspAsnValThr<- : 174 !|||||||||||| !! !! ! ! !!! ! !||| ! ! ||| !||| lyTyrCysValMetThrAlaSerThrThrMetValValValValGlyAsnLysThrTh 237253 : GATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTAC : 237309 175 : ><->IleLysValPheProAsnProCysGluLeuIlePheValAspValGlnValSer : 191 :!::::|||.!.||| ||| ! ! .!!:!! |||.!...!!:! rIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsn 237310 : GATCTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAAT : 237366 192 : ProPheTyrGluValAlaTyrThrLeuAspValPheAlaCysCysValPheTyrThrI : 211 !!.!. !!!!::!!!.! ! !! !.!. !!.!!:!! ! ! !:!! !!!.!! ThrMetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnS 237367 : ACTATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACA : 237426 212 : lePheCysGlyIleCysSerLeuThrAlaLysPheValMetHisAlaCysGlyGlnCy : 230 ! !.!!:!! |||||||||::! .!...! ||||||! !||||||! erAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLe 237427 : GTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTT : 237483 231 : sGluIleLeuMetAspPhePheGluLysLeuVal<->AspGlyAspAspLysAsnGlu : 248 ...:!::!!||| ! .!!||| ! !!!||| !!:!.! !!:!...:!! uSerValValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLys 237484 : GAGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAG : 237540 249 : SerThrIleAsnGlnArgIleSerAsnValValThrHisHisLeuArgIleLeuLysP : 268 ..! ! ! !.!...!||| !!!..:!!||| !.!.|||||||||:!:||||||! AspAspHisPheAspGluIleProThrIleValGluGluHisLeuArgValLeuLys* 237541 : GACGATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAGT : 237600 269 : heValSerAspValAspLysValLeu : 276 |||!!! :!!||| !:!!||| **ValCysLeuLeuAspLeuIleLeu 237601 : AAGTATGTTTGTTGGATTTGATTTTG : 237626 vulgar: CbirOr4 19 276 . KQ414889.1 236852 237626 + 189 M 17 51 G 1 0 M 22 66 G 1 0 M 113 339 G 0 6 M 68 204 G 0 3 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236853 237626 189 + . gene_id 18 ; sequence CbirOr4 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236853 237626 . + . KQ414889.1 exonerate:protein2genome:local exon 236853 237626 . + . insertions 9 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236853 237626 189 + . alignment_id 18 ; Query CbirOr4 ; Align 236853 20 51 ; Align 236904 38 66 ; Align 236970 61 339 ; Align 237315 174 204 ; Align 237522 242 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 27 -> 199 Target range: 294711 -> 295233 28 : LeuLeuLysProMetGlyAlaTrpProLeuGlnGlnGlnProThrIle<->LeuGluI : 46 ||||||||||||!!:||| !||||||||| ! ...! !|||! ! |||.!.! LeuLeuLysProIleGlyLeuTrpProLeuIleTyrSerHisThrSerLysLeuAsnL 294712 : CTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACA : 294769 47 : leIleValTyrIlePheSerIleAlaIleThrThrPheLeuGlnLeuPheMetIleIl : 65 !:!!:!!! |||.!! !|||||| !|||!!. ! !||||||:!::!!:! ysValLeuSerIleIleLeuIleAlaTrpCysThrLeuThrValLeuPheValLeuVa 294770 : AAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGT : 294826 66 : eProTrpPheLeuSerIleIleThrAlaAsnTrpSerPheTyrAspIleIleArgThr : 84 :|||!! ! !! ! !:!! ! ! ::: !!:!:! ! lProCysGlyTyrPheCysValPheHisValLysAsnValLysLeuLysMetLysLeu 294827 : GCCATGCGGATACTTCTGTGTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTT : 294883 85 : AlaCysProLeuIlePheValAsnThrIlePheLeuArgTyrLeuLeuLeuLeuPheH : 104 ! !!|||:!!:!!!:! !! ! !.!.||||||||| !! !|||:!!!!. LeuGlyProValLeuTyrSerMetLeuSerMetLeuArgTyrSerCysLeuValLeuL 294884 : CTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGA : 294943 105 : isArgAspAlaIleArgSerCysIleAsnCysValAlaGluAspTrpArgAsnValVa : 123 ! ! ! !|||.!!!:! !||||||.!. !:!!! !.!.||||||!:! :!!! ysThrProAlaPheLysHisCysIleGluAspIleGluAsnAspTrpLysLeuIleAs 294944 : AAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGA : 295000 124 : lIleAlaGluHisArgGluIleMetLeuThrAsnAlaLysSerGlyArgPhePheGly : 142 !! ! !!|||||||||! !||||||:!!! !||||||! ! ! !!:! .!. ! pAsnProGluHisArgAlaIleMetIleLysAsnAlaMetValThrGlnArgMetThr 295001 : TAATCCGGAACACCGAGCGATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACC : 295057 143 : MetValSerValAlaPheMetPheSerSerGlyLeuProTyr<->CysValMetProL : 161 :!:!.!! !..! !.!.!!:!:!||||||!.!:!! !!||| ..!:!!:::|||. ValAlaPheThrIleIleIleTyrSerSerAlaValSerTyrHisAlaIleValProP 295058 : GTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccat : 295117 162 : euLeuLeuProSerProValAsnGluAspAsnValThrIleLysValPheProAsnPr : 180 ..... ::: !! !|||:!! ! ||| !||||||:::!.!!!.|||! !|| hePheSerAsnAlaLeuGluAsnLysLysAsnAsnThrIleArgAlaLeuProIlePr 295118 : ttttttcaaacgctTTGGAGAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCC : 295174 181 : oCysGluLeuIlePheValAspValGlnValSerProPheTyrGluValAlaTyrThr : 199 | !! ! !:!!|||||||||!.! ! !|||||| !||||||:!! ! ||| oGlyTyrGluLeuPheValAspAlaTyrSerSerProThrTyrGluIleIleArgThr 295175 : TGGCTACGAGTTATTCGTAGACGCTTATTCCAGTCCTACCTACGAGATCATAAGAACT : 295231 vulgar: CbirOr4 27 199 . KQ414889.1 294711 295233 + 178 M 16 48 G 0 3 M 113 339 G 0 3 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294712 295233 178 + . gene_id 19 ; sequence CbirOr4 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294712 295233 . + . KQ414889.1 exonerate:protein2genome:local exon 294712 295233 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294712 295233 178 + . alignment_id 19 ; Query CbirOr4 ; Align 294712 28 48 ; Align 294763 44 339 ; Align 295105 157 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 176 Query range: 308 -> 409 Target range: 291389 -> 292605 309 : IleGlnIlePheValTyrPheValAlaCysValSerIleThrPheAsnIleTyrIleP : 328 ||| !|||!!...!||| !!..! ! !..!|||.!!|||||||||||| |||| IleGlyIleLeuThrTyrValThrLeuLeuThrSerPheThrPheAsnIleLeuIleP 291390 : ATCGGGATATTAACATACGTCACTCTCCTCACTTCTTTCACTTTCAACATACTGATAT : 291447 329 : heCysTyrIleGlyGluGlnLeuValAspArg >>>> Target Intron 1 >>> : 339 ||||||||:!!||||||! |||:!!! !:! 913 bp heCysTyrValGlyGluLeuLeuLeuGlyGln++ 291448 : TCTGTTACGTTGGCGAACTTCTTCTTGGACAGgt........................ : 291482 340 : > AlaGlnLysIleGlyThrThrCysTyrMetIleGluTrpTyrGlnLeuProAsnA : 357 !.!...:!!|||!.! !.!!! !||| ! !|||||||||.!.||||||!.. ++GlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 291483 : .agGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 358 : spLysAlaArgSerMetIlePheProIleIleMetSerSerTyrProIleGluLeuTh : 376 |||||||||..!!!::!!.!. !:!! !!!:!!!!.!:!!||||||:!!||||| rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 377 : rAlaGlyLysMetLeuLysMetThrMetSerSerPheSerAsnIleLeuLysIleSer : 395 ||||||||||!!:!!! :!::!!:!!!:!!!!|||.!! !:!!! !:!! !!.! rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSerLys 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCAAAA : 292561 396 : MetThrTyrPheAsnLeuLeuArgGluValSerSerArgAsp : 409 :!:..!! .!.:!!! ! !||| !|||...... ||| LeuValLeuIleHis***GluArgIleValAspGlySerAsp 292562 : CTAGTCTTGATACACTAAGAACGTATAGTTGAtggaagcgat : 292605 vulgar: CbirOr4 308 409 . KQ414889.1 291389 292605 + 176 M 30 90 5 0 2 I 0 909 3 0 2 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291390 292605 176 + . gene_id 20 ; sequence CbirOr4 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291390 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291390 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292605 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292605 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291390 292605 176 + . alignment_id 20 ; Query CbirOr4 ; Align 291390 309 90 ; Align 292393 339 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 308 -> 391 Target range: 301707 -> 302036 309 : IleGlnIlePheValTyrPheValAlaCysValSerIleThrPheAsnIleTyrIleP : 328 ||| !!:!!...!!:!|||..! !! ..!|||.!!||||||||||||!:!|||| IleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAsnIlePheIleP 301708 : ATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATATTCATAT : 301765 329 : heCysTyrIleGlyGluGlnLeuValAspArgAlaGlnLysIleGlyThr{T} >>> : 345 ||||||||||||||||| ||| !!!:!:!!.!! ! !.!!! !{|} heCysTyrIleGlyGluIleLeuSerGluGlnValLeuThrTyrSerArg{T}++ 301766 : TCTGCTACATCGGCGAGATTCTTTCCGAACAGGTACTTACTTACAGTAGA{a}gt... : 301819 346 : > Target Intron 1 >>>> {hr}CysTyrMetIleGluTrpTyrGlnLeuPro : 355 80 bp {||}! ||| !|||!!:||||||.!.|||||| ++{hr}SerTyrGluIleAspTrpTyrAsnLeuPro 301820 : ......................ag{CA}TCGTACGAGATCGATTGGTACAATTTACCA : 301926 356 : AsnAspLysAlaArgSerMetIlePheProIleIleMetSerSerTyrProIleGluL : 375 ! !:!||| !..!:!:|||.!.! !! !:!:!!:|||..!|||||| :!!| AlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysL 301927 : GCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAAC : 301986 376 : euThrAlaGlyLysMetLeuLysMetThrMetSerSerPheSerAsnIle : 391 ||||||||||||||!!::!! ! :!::!!:!!!:!!!!||||||::!:!! euThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301987 : TTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: CbirOr4 308 391 . KQ414889.1 301707 302036 + 154 M 36 108 S 0 1 5 0 2 I 0 76 3 0 2 S 1 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301708 302036 154 + . gene_id 21 ; sequence CbirOr4 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301708 301816 . + . KQ414889.1 exonerate:protein2genome:local exon 301708 301816 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301817 301818 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 301817 301896 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301895 301896 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301897 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301897 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301708 302036 154 + . alignment_id 21 ; Query CbirOr4 ; Align 301708 309 108 ; Align 301899 346 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 340 -> 401 Target range: 287069 -> 287252 341 : LysIleGlyThrThrCysTyrMetIleGluTrpTyrGlnLeuProAsnAspLysAlaA : 360 |||:!!||| !:!! !|||||||||!!:||||||!::||||||... ! ! !|||! LysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaG 287070 : AAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTC : 287127 361 : rgSerMetIlePheProIleIleMetSerSerTyrProIleGluLeuThrAlaGlyLy : 379 :!.!!:!!|||.!. !.!! !:!!|||!:!! ! !!|||:!!|||||||||||||| lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 287128 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 287184 380 : sMetLeuLysMetThrMetSerSerPheSerAsnIleLeuLysIleSerMetThrTyr : 398 |!!::!! ! :!::!!:!:|||||||||!!!!:!:!: !! |||!:!:!::!!||| sIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 287185 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 287241 399 : PheAsnLeu : 401 !:!:!!||| TyrHisLeu 287242 : TATCATTTG : 287252 vulgar: CbirOr4 340 401 . KQ414889.1 287069 287252 + 140 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287070 287252 140 + . gene_id 22 ; sequence CbirOr4 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287070 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287070 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287070 287252 140 + . alignment_id 22 ; Query CbirOr4 ; Align 287070 341 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 183 -> 269 Target range: 202709 -> 203161 184 : IlePheValAspValGlnValSerProPheTyrGluValAlaTyrThrLeuAspValP : 203 .!!.!!:!!||||||::! !|||||| ! !!|||:!! !!:!:!!:!! :!! PheIleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleV 202710 : TTTATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCG : 202767 204 : heAlaCysCysValPheTyrThrIlePheCysGlyIleCysSerLeuThrAlaLysPh : 222 ! ||| ! !:!!.!!:!! !:!! ! ||| !|||!!!||||||||| !|| alAlaValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPh 202768 : TAGCTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTT : 202824 223 : eValMetHisAlaCysGlyGlnCysGluIleLeuMetAspPhePheGluLysLeuVal : 241 |!.!:!:|||! !||||||||| !!::!!||||||! !!::.!.||| ! |||:!! eAlaValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMet 202825 : TGCGGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATG : 202881 242 : AspGlyAspAsp{L} >>>> Target Intron 1 >>>> {ys}AsnGluSerT : 250 |||||| !...{ } 194 bp { !} !!|||..!! AspGlyArgSer{G}-+ -+{ly}TyrGluGlnA 202882 : GATGGTCGTTCG{G}at.........................cg{GA}TATGAGCAAA : 203102 251 : hrIleAsnGlnArgIleSerAsnValValThrHisHisLeuArgIleLeuLysPheVa : 269 .!:!:||| |||!!: !!.!:!!|||!:!!!.|||:!!||||||||||||! !|| snValAsnGlyArgMetValThrIleValSerGlnHisIleArgIleLeuLysCysVa 203103 : ATGTGAATGGCAGAATGGTGACCATCGTGAGCCAACACATACGGATACTGAAATGTGT : 203159 270 : l : 269 | l 203160 : G : 203161 vulgar: CbirOr4 183 269 . KQ414889.1 202709 203161 + 133 M 62 186 S 0 1 5 0 2 I 0 190 3 0 2 S 1 2 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202710 203161 133 + . gene_id 23 ; sequence CbirOr4 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 202710 202896 . + . KQ414889.1 exonerate:protein2genome:local exon 202710 202896 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 202897 202898 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 202897 203090 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 203089 203090 . + . intron_id 0 ; splice_site "CG" KQ414889.1 exonerate:protein2genome:local cds 203091 203161 . + . KQ414889.1 exonerate:protein2genome:local exon 203091 203161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202710 203161 133 + . alignment_id 23 ; Query CbirOr4 ; Align 202710 184 186 ; Align 203093 247 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 334 -> 391 Target range: 214851 -> 215022 335 : LeuValAspArgAlaGlnLysIleGlyThrThrCysTyrMetIleGluTrpTyrGlnL : 354 :!!:!!.!.!:!..!:!!|||:!!||| !..!! ||||||||||||||||||!:!| MetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrArgL 214852 : ATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACCGAT : 214909 355 : euProAsnAspLysAlaArgSerMetIlePheProIleIleMetSerSerTyrProIl : 373 |||||..!:!!||| !! !!!! |||!!. !!!: !||||||!:!! !!:! euProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSerVa 214910 : TGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATCCGT : 214966 374 : eGluLeuThrAlaGlyLysMetLeuLysMetThrMetSerSerPheSerAsnIle : 391 !:!!!!!|||||||||!!.|||:!!:!!:!!:!!!!:|||!!!||||||!:!:!! lLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214967 : CAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215022 vulgar: CbirOr4 334 391 . KQ414889.1 214851 215022 + 126 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214852 215022 126 + . gene_id 24 ; sequence CbirOr4 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214852 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214852 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214852 215022 126 + . alignment_id 24 ; Query CbirOr4 ; Align 214852 335 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 335 -> 391 Target range: 234979 -> 235147 336 : ValAspArgAlaGlnLysIleGlyThrThrCysTyrMetIleGluTrpTyrGlnLeuP : 355 ..!.!.!:!..! |||:!!||| !! ! ||||||! !|||||||||!:!|||| ThrGlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuP 234980 : ACTCAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTAC : 235037 356 : roAsnAspLysAlaArgSerMetIlePheProIleIleMetSerSerTyrProIleGl : 374 ||:!! ! ! |||! !.!!:!!:!!.!. !||| !! !|||||| !|||:! roHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLy 235038 : CTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAA : 235094 375 : uLeuThrAlaGlyLysMetLeuLysMetThrMetSerSerPheSerAsnIle : 391 !:!!||||||||||||.!.|||:!!|||:!!:!::!!!!!|||.!!:!!:!: sIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235095 : AATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: CbirOr4 335 391 . KQ414889.1 234979 235147 + 117 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234980 235147 117 + . gene_id 25 ; sequence CbirOr4 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234980 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234980 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234980 235147 117 + . alignment_id 25 ; Query CbirOr4 ; Align 234980 336 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 7 -> 118 Target range: 299653 -> 299989 8 : AsnValGlnAsnGluGluHisPheLeuAspPheHisTyrAlaAlaGlnValSerLeuT : 27 .!.:!!::!||| ! .!.:!! !|||.!.||||||.!! !|||:!!!!!! !| GlnLeuArgAsnTyrHisTyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnT 299654 : CAATTGAGGAATTACCATTACCAAAATGACATACATTACACGCTGCAAATGTGCCAAT : 299711 28 : rpLeuLeuLysProMetGlyAlaTrpPro<->LeuGlnGlnGlnProThrIleLeuGl : 45 ||||||||||||||!!:|||!.!|||! ! |||.!.|||!:: !!!:!! ||||| rpLeuLeuLysProIleGlyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGl 299712 : GGTTGTTGAAACCTATCGGAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGA : 299768 46 : uIleIleValTyrIlePheSerIleAlaIleThrThrPheLeuGlnLeuPheMetIle : 64 | !:!!|||! ||| !! !!!:.!!||| ! !! ! !! !!!!|||!!::!! uHisLeuValSerIleValLeuMetThrIleCysPheSerSerLeuPhePheIleVal 299769 : ACACCTCGTCTCGATCGTTCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTC : 299825 65 : IleProTrpPheLeuSerIleIleThrAlaAsnTrpSerPheTyrAspIleIleArgT : 84 :!:|||! !! !! !|||.!! !|||.!. |||.!.:!!! !! :!:!:!. LeuProSerGlyHisTyrIlePhePheAlaGluLysSerIleHisValLysValLysV 299826 : TTGCCATCCGGTCATTACATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAG : 299885 85 : hrAlaCysProLeuIlePheValAsnThrIlePheLeuArgTyrLeuLeuLeuLeuPh : 103 .! ! !!|||:!! !||| ! !:!! !.!!:!!!:!|||! !! !|||! !.! alPheGlyProValGlyPheCysLeuSerSerIleValLysTyrCysTyrLeuCysLe 299886 : TATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCT : 299942 104 : eHisArgAspAlaIleArgSerCysIleAsnCysValAlaGluAsp : 118 .:!! !!! !|||.!!..! !!||||||.!. !|||! !..!||| uAsnGlyGlyAlaPheGluArgCysIleGlnHisValGluArgAsp 299943 : GAACGGTGGCGCGTTCGAACGATGCATCCAACACGTCGAGAGAGAC : 299989 vulgar: CbirOr4 7 118 . KQ414889.1 299653 299989 + 115 M 29 87 G 0 3 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299654 299989 115 + . gene_id 26 ; sequence CbirOr4 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299654 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299654 299989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299654 299989 115 + . alignment_id 26 ; Query CbirOr4 ; Align 299654 8 87 ; Align 299744 37 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 337 -> 391 Target range: 264723 -> 264885 338 : ArgAlaGlnLysIleGlyThrThrCysTyrMetIleGluTrpTyrGlnLeuProAsnA : 357 !:!..!:!!|||:!!||| !..! !|||||| .!.|||||| ! |||||| !! GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 358 : spLysAlaArgSerMetIlePheProIleIleMetSerSerTyrProIleGluLeuTh : 376 ! ! !! !..!:!!|||.!! !|||:!!! |||||| !.!!:!!!!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 377 : rAlaGlyLysMetLeuLysMetThrMetSerSerPheSerAsnIle : 391 ||||||||||!!:||| ! |||:!!|||! !!!!||||||:!!:!! rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: CbirOr4 337 391 . KQ414889.1 264723 264885 + 107 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264885 107 + . gene_id 27 ; sequence CbirOr4 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264885 107 + . alignment_id 27 ; Query CbirOr4 ; Align 264724 338 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 340 -> 391 Target range: 244664 -> 244817 341 : LysIleGlyThrThrCysTyrMetIleGluTrpTyrGlnLeuProAsnAspLysAlaA : 360 |||:!!||| !..! !||||||! !!!:|||||| ! ||||||.!. !:! !! LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 244665 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 244722 361 : rgSerMetIlePheProIleIleMetSerSerTyrProIleGluLeuThrAlaGlyLy : 379 !..!:!:|||.!. !|||! ! |||!:! !:!!|||:!!||||||||||| euAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleThrAlaGlyLy 244723 : TCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCACCGCTGGAAA : 244779 380 : sMetLeuLysMetThrMetSerSerPheSerAsnIle : 391 |:!:||| ! |||:!!:!:! !!!!|||.!!:!!:!! sValLeuHisMetSerLeuTyrThrPheGlyAspVal 244780 : AGTATTACATATGTCGCTTTACACGTTCGGCGATGTA : 244817 vulgar: CbirOr4 340 391 . KQ414889.1 244664 244817 + 106 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244665 244817 106 + . gene_id 28 ; sequence CbirOr4 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244665 244817 . + . KQ414889.1 exonerate:protein2genome:local exon 244665 244817 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244665 244817 106 + . alignment_id 28 ; Query CbirOr4 ; Align 244665 341 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 340 -> 396 Target range: 254280 -> 254448 341 : LysIleGlyThrThrCysTyrMetIleGluTrpTyrGlnLeuProAsnAspLysAlaA : 360 |||:!!||| !..! !||||||! !!!:|||||| ! ||||||.!. !:! !! LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 254281 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 254338 361 : rgSerMetIlePheProIleIleMetSerSerTyrProIleGluLeuThrAlaGlyLy : 379 !..!:!:|||.!. !|||! ! |||!:! !:!!|||:!!||||||||||| euAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLy 254339 : TCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaa : 254395 380 : sMetLeuLysMetThrMetSerSerPheSerAsnIleLeuLysIleSerMet : 396 |:::... |||:!!:!:! !!!!|||.!!:!!:!! !:!!! !!:!:!: sIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeu 254396 : aatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTT : 254448 vulgar: CbirOr4 340 396 . KQ414889.1 254280 254448 + 105 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254281 254448 105 + . gene_id 29 ; sequence CbirOr4 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254281 254448 . + . KQ414889.1 exonerate:protein2genome:local exon 254281 254448 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254281 254448 105 + . alignment_id 29 ; Query CbirOr4 ; Align 254281 341 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 340 -> 396 Target range: 238634 -> 238802 341 : LysIleGlyThrThrCysTyrMetIleGluTrpTyrGlnLeuProAsnAspLysAlaA : 360 |||:!!||| !..! !||||||! !!!:|||||| ! ||||||.!. !:! !! LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 238635 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 238692 361 : rgSerMetIlePheProIleIleMetSerSerTyrProIleGluLeuThrAlaGlyLy : 379 !..!:!:|||.!. !|||! ! |||!:! !:!!:!!:!!||||||||||| euAspLeuIleLeuIleIleLysArgSerAsnValValValLysValThrAlaGlyLy 238693 : TCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCACCGCTGGAAA : 238749 380 : sMetLeuLysMetThrMetSerSerPheSerAsnIleLeuLysIleSerMet : 396 |:!:||| ! |||:!!:!:! !!!!|||.!!:!!:!! !:!!! !!:!:!: sValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeu 238750 : AGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTT : 238802 vulgar: CbirOr4 340 396 . KQ414889.1 238634 238802 + 102 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238635 238802 102 + . gene_id 30 ; sequence CbirOr4 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238635 238802 . + . KQ414889.1 exonerate:protein2genome:local exon 238635 238802 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238635 238802 102 + . alignment_id 30 ; Query CbirOr4 ; Align 238635 341 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 936 Query range: 14 -> 387 Target range: 232456 -> 235147 15 : AspTyrSerLeuGlnLeuThrArgTrpPheLeuIleProIleAlaAlaTrpProArgA : 34 !!:||||||:!!|||:!!!.!||||||||||||! !|||!!:!.!||||||||||||! GluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgV 232457 : GAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTG : 232514 35 : laAla<->ProSerThrValGluLysIleSerLeuGlnAlaHisValLeuAlaCysTy : 52 .!.!! !!|||! !!.!:!!:!!:!! ! !:!! ! !|||.!!|||:! alThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHi 232515 : TTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCA : 232571 53 : rLeuLeuIleValValValMetValProCysPheLeuTyrMetSerLeuGluGluAsn : 71 !! !|||!!::!! ! !!!:|||||||||.!!|||!:!!!: !!!!|||!!:!.. sSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThr 232572 : TTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACG : 232628 72 : AspIleGlnMetLysLeuAsnAlaMetGlyProLeuSerHisTrpIleMetGlyThrI : 91 ..!:!!:!! !:!:!!!!.:!!!!:||||||:!!||||||!:::!:|||||| !: SerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluL 232629 : AGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAAT : 232688 92 : leAsnTyrTrpLeuLeuLeuThrArgSerAsnAspIleArgGluCysValArgHisMe : 110 !:||||||!! ! !||||||.!!!:!:!!|||||||||! ! ! ||||||..!!!.:! euAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnVa 232689 : TGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGT : 232745 111 : tGluAsnAspTrpArgLeuValGlnArgAlaAspAspGlnTrpValMetLeuArgTyr : 129 !:!!.!.||||||||| !|||:!!!:! !!! ! !!!:: :!!||||||!:! !! lLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsn 232746 : GAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAAC : 232802 130 : AlaArgIleGlyArgPheValAlaAlaPheCysAlaValPheMetGlnSerGlyThrL : 149 |||!:!:!!||||||! :!!|||..!.!!..!||| !!! !|||!!.!!!|||..! AlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValG 232803 : GCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCG : 232862 150 : euLeuPheGlnValValLysAlaMetThrSerMetProValValValGlyAsnGluTh : 168 !! ! !:!!:!!|||! !!.!:!: !! !! !! !! !||||||||||||!: lySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSe 232863 : GCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAG : 232919 169 : rValLeuValHisProMetThrCysProIleTyrSerLysPheValAspThrArgPhe : 187 ! !! !:!!:!!|||:!: !!||| !!.!!|||!!!|||.!.:!!|||||||||||| rTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPhe 232920 : TTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTC : 232976 188 : SerProAlaAsnGluIleMetLeuValValGlnIleLeuSerCysPheValValAsnS : 207 ||||||.!!||||||||||||!!!|||:!!||| !|||||| ! |||:!!||||||| SerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnS 232977 : AGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACT : 233036 208 : erIleThrValGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAlaTyrGlyGl : 226 ||:!!|||||||||||||||.!!|||!.!||||||.!.||||||||||||! !||||| erValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGl 233037 : CCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACA : 233093 227 : nLeuSerMetLeuPheSerTrpLeuAsnGluLeuValAlaAspGluAspLysGlyAsn : 245 ||||!:!:!!:!!.!.||| |||:!!!!:||||||! !! :!!! :!!! !.!. nLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGlyGlnGluGlu 233094 : GCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAGGAGGAG : 233150 246 : GluPheAlaAspGlnLysLeuAlaValIleValGluHisHisLeuArgValLeu{Se} : 264 ..! !!|||.!.::!||||||!.! !!|||||||||||||||||||||..!|||{||} ArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeu{Se} 233151 : AGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTA{AG} : 233207 265 : >>>> Target Intron 1 >>>> {r}PheIleSerArgMetGluSerLeuMe : 273 1315 bp {|}|||||| !!!.!!!:|||!:!:!!|| ++ ++{r}PheIleArgAsnIleGluAsnValMe 233208 : gt.........................ag{T}TTTATACGGAATATAGAGAACGTTAT : 234549 274 : tGlnHisIleCysLeuValGluLeuValGlyCysThrLeuAsnMetCysLeuLeuAla : 292 |.!.! ||||||||||||||||||||||||||||||||||||||||||:!!|||! ! tAsnLeuIleCysLeuValGluLeuValGlyCysThrLeuAsnMetCysMetLeuGlu 234550 : GAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACGTTGAACATGTGCATGCTCGAG : 234606 293 : TyrTyrThrIleThr >>>> Target Intron 2 >>>> AsnTrpSerAsnPh : 302 |||||| !:!!||| 189 bp .!. |||... TyrTyrLeuLeuThr++ ++GluLysSerLys-- 234607 : TATTATTTACTCACGgt.........................agGAAAAgtcgaag-- : 234825 303 : eAspAlaGlyArgMetThrSerTyrPhePheValTyrValSerMetAlaPheAsnIle : 321 ::::::.!!|||||| !!.!!|||||||||||||||.!!||||||||| -------GluLysLeuAlaSerTyrValIleValTyrValSerMetThrPheAsnIle 234826 : -------gaaaaattagCTTCATACGTCATCGTGTACGTGTCCATGACATTtaatata : 234873 322 : PheIlePheCysTyrIleGlyGluIleLeuThrGluGln >>>> Target Intro : 335 ||||||||||||||||||||||||! |||||||||||| 74 bp PheIlePheCysTyrIleGlyGluThrLeuThrGluGln++ 234874 : ttcatattttgttACATCGGAGAGACGCTTACAGAGCAGgt................. : 234917 336 : n 3 >>>> CysLysThrValGlyGluLysAlaTyrMetThrAspTrpTyrLysLeu : 350 |||! ! !||||||||||||!.!|||||||||!!:||||||::!||| ++CysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeu 234918 : ........agTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTA : 235034 351 : ProHisLysThrAlaArgGlyLeuLeuLeuIleIleAlaArgSerSerAsnValIleL : 370 |||||||||||||||! !||||||:!!:!!||||||:!!|||||||||! ||||||| ProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleL 235035 : CCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAA : 235094 371 : ysIleThrAlaGlyLysLeuPheGlnLeuSerIleAlaThrPheGlyAspVal : 387 |||||||||||||||||!!!.!.|||:!!|||:!!|||||||||||||||||| ysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235095 : AAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: CbirOr23 14 387 . KQ414889.1 232456 235147 + 936 M 21 63 G 0 3 M 228 684 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 33 99 5 0 2 I 0 185 3 0 2 M 4 12 G 3 0 M 30 90 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232457 235147 936 + . gene_id 1 ; sequence CbirOr23 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232457 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232457 233208 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232457 235147 936 + . alignment_id 1 ; Query CbirOr23 ; Align 232457 15 63 ; Align 232523 36 684 ; Align 234525 265 99 ; Align 234813 298 12 ; Align 234825 305 90 ; Align 234989 335 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 907 Query range: 6 -> 402 Target range: 259745 -> 262201 7 : SerAsnSerCysArgSerAsnAsnAspTyrSerLeuGlnLeuThrArgTrpPheLeuI : 26 ..!!..|||! !! !|||:!!!:!|||||||||||||||!!!!.!||||||||||||! GluThrSerPheThrSerHisSerAspTyrSerLeuGlnPheAsnArgTrpPheLeuL 259746 : GAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCCAATTTAATCGATGGTTCCTGA : 259803 27 : leProIleAlaAlaTrpProArgAlaAlaProSerThr<->ValGluLysIleSerLe : 44 !||||||!.!|||||||||! !:!!:!! !!!!!||| :!!|||||||||! !! ysProIleGlyAlaTrpProProSerSerSerThrThrArgLeuGluLysIleIleSe 259804 : AACCGATAGGCGCTTGGCCACCTTCATCCTCCACGACCAGACTCGAGAAGATCATCTC : 259860 45 : uGlnAlaHisValLeuAlaCysTyrLeuLeuIleValValValMetValProCysPhe : 63 ! !! :!!!!! !|||||| ! !|||:!!|||..!:!!:!!|||||| ! rValIleLeuIlePheIleCysTyrSerThrIleLeuValThrLeuIleProCysVal 259861 : TGTTATCCTGATCTTTATCTGCTACAGTACCATACTGGTCACCCTGATCCCGTGCGTA : 259917 64 : LeuTyrMetSerLeuGluGluAsnAspIleGlnMetLysLeuAsnAlaMetGlyProL : 83 |||:!!||| !||||||:!!.!...!:!: ! |||||| !!!.!.!:!:||||||| LeuHisMetLeuLeuGluLysGluSerLeuTyrMetLysThrLysValLeuGlyProL 259918 : CTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGAAGGTGCTCGGTCCTC : 259977 84 : euSerHisTrpIleMetGlyThrIleAsnTyrTrpLeuLeuLeuThrArgSerAsnAs : 102 ||!!!||||||.!!:!:||| !||||||||| !|||||| !|||.!!!..|| euThrHisTrpPheValGlyCysIleAsnTyrThrThrLeuLeuLeuArgGlyArgAs 259978 : TTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTGTTGAGAGGCAGAGA : 260034 103 : pIleArgGluCysValArgHisMetGluAsnAspTrpArgLeuValGlnArgAlaAsp : 121 ||||! !...||||||..!|||:!!|||||||||||||||:!!:!! !|||! ! ! pIleLeuSerCysValGluHisValGluAsnAspTrpArgIleIleThrArgGluLys 260035 : CATACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGAATTATAACGAGGGAGAAG : 260091 122 : AspGlnTrpValMetLeuArgTyrAlaArgIleGlyArgPheValAlaAlaPheCysA : 141 |||||| ||||||||||||||||||!:!.!!||||||!:!|||||||||! !|||| AspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgTyrValAlaAlaSerCysA 260092 : GATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGATACGTCGCTGCCTCTTGCG : 260151 142 : laValPheMetGlnSerGlyThrLeuLeuPheGlnValValLysAlaMetThrSerMe : 160 ||!.!|||:!!|||.!!|||..!|||! !||| :!!|||! !!.!:!!!:!!!! laAlaPheValGlnGlyGlyValLeuCysPheCysLeuValThrValLeuSerThrGl 260152 : CGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGA : 260208 161 : tProValValValGlyAsnGluThrValLeuValHisProMetThrCysProIleTyr : 179 ! !:!! !||||||||||||||| !:!!||||||! !:!! !!||| !!:!:||| uValIleGlnValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaValTyr 260209 : GGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTGCCGTGCGCGGTGTAC : 260265 180 : SerLysPheValAspThrArgPheSerProAlaAsnGluIleMetLeuValValGlnI : 199 !.!:!!.!.:!!:!!..!!.! !|||||| !|||||||||:!:||||||||||||. LysGluLeuIleAsnValAsnAspSerProMetAsnGluIleValLeuValValGlnP 260266 : AAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGATTGTTCTCGTCGTGCAAT : 260325 200 : leLeuSerCysPheValValAsnSerIleThrValGlyAlaCysSerLeuAlaAlaVa : 218 !!:!!||| ! |||:!!|||||||||! !||||||||| !! !|||||||||||||| heValSerGlyPheIleValAsnSerSerThrValGlyIlePheSerLeuAlaAlaVa 260326 : TCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGT : 260382 219 : lPheAlaMetHisAlaTyrGlyGlnLeuSerMetLeuPheSerTrpLeuAsnGluLeu : 237 |.!..!! ||||||! !|||||||||!:!:!!|||.!...!|||:!!!..|||!!! lLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMetGluTrpIleThrGluPhe 260383 : TCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAATGGATCACGGAGTTT : 260439 238 : ValAlaAspGluAspLysGlyAsnGluPheAlaAsp<->GlnLysLeuAlaValIleV : 256 |||! !!!:..! !!. !!!!.:!! ||| ! :!!:!!:!!!.!||||||| ValAspGluSerArgAsnArgLysLysLysAlaProPheLysGluIleGlyValIleV 260440 : GTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTCCTTTCAAGGAGATCGGAGTGATTG : 260499 257 : alGluHisHisLeuArgValLeu{Se} >>>> Target Intron 1 >>>> {r : 264 |||||||||||||||||!.!|||{!!} 257 bp {! alGluHisHisLeuArgAlaLeu{Th}++ ++{r 260500 : TCGAACATCATTTGAGAGCACTC{AC}gt.........................ag{C : 260782 265 : }PheIleSerArgMetGluSerLeuMetGlnHisIleCysLeuValGluLeuValGly : 283 }||||||||||||!!:|||..!:!!|||.!.!..||||||!!!:!!|||||| !! !! }PheIleSerArgIleGluAspValMetAsnArgIleCysPheLeuGluLeuPheArg 260783 : }TTCATATCGCGTATCGAGGATGTGATGAACCGGATATGCTTCCTGGAGTTGTTCAGG : 260837 284 : CysThrLeuAsnMetCysLeuLeuAlaTyrTyrThrIleThr >>>> Target In : 298 |||||||||:!!!!:|||||||||!.!||||||! !:!!! ! 852 CysThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeuMet++ 260838 : TGCACTCTGGATATATGTCTACTTGGCTACTATATTCTTATGgt.............. : 260884 299 : tron 2 >>>> AsnTrpSerAsnPheAspAlaGlyArgMetThrSerTyrPhePhe : 312 bp .!.|||:!!.!. ||| ! !!.!:!!:!!!!!||||||.!. ++GluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheMet 260885 : ...........agGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCATG : 261776 313 : ValTyrValSerMetAlaPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuT : 332 :!! :!!:!!!!:..!||||||:!!||||||.!!|||||||||||||||||||||| MetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLeuT 261777 : ATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACTAA : 261836 333 : hrGluGln >>>> Target Intron 3 >>>> CysLysThrValGlyGluLys : 341 |||||||| 81 bp |||..!! !||||||!!: hrGluGln++ ++CysSerLysValGlyAspVal 261837 : CGGAACAGgt.........................agTGCTCGAAAGTTGGTGACGTT : 261944 342 : AlaTyrMetThrAspTrpTyrLysLeuProHisLysThrAlaArgGlyLeuLeuLeuI : 361 !.!|||||||||:!!|||||| ! |||||| !!|||!:! !! !! !|||:!!|||| ValTyrMetThrAsnTrpTyrTyrLeuProAspLysSerIleLeuAspLeuIleLeuI 261945 : GTTTACATGACAAACTGGTATTATTTACCTGATAAAAGTATCCTTGATTTGATTTTGA : 262004 362 : leIleAlaArg-SerSerAsnValIleLysIleThrAlaGlyLysLeuPheGlnLeu{ : 380 |||||||||||#!:! !!...! !|||!.. !!.!!.!||| !! ! !!!:!! !{ leIleAlaArg#AsnArgArgGluIleSerSerAsnValGlyLeuHisValArgArg{ 262005 : TCATTGCACGAAAACCGCCGGGAAATTAGTTCAAATGTCGGTTTACACGTTCGGCGA{ : 262062 381 : S} >>>> Target Intron 4 >>>> {er}IleAlaThrPheGlyAspValIl : 388 |} 71 bp {||}! ! !! !.!. !.!.|||:! S}++ +-{er}SerProLeuIlePheGlnValVa 262063 : T}gt.........................ac{CA}AGTCCGTTGATATTCCAGGTGGT : 262157 389 : eLysThrSerValIleTyrLeuAsnLeuIleArgThrMetThr : 402 !||||||:!! !! ||||||||||||:!:||| !|||||| lLysThrAlaPheAlaTyrLeuAsnLeuLeuArgGlnMetThr 262158 : TAAAACTGCTTTCGCGTATCTGAATCTGTTGCGTCAAATGACG : 262201 vulgar: CbirOr23 6 402 . KQ414889.1 259745 262201 + 907 M 32 96 G 0 3 M 211 633 G 0 3 M 14 42 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 30 90 F 0 1 M 15 45 S 0 1 5 0 2 I 0 67 3 0 2 S 1 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259746 262201 907 + . gene_id 2 ; sequence CbirOr23 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259746 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259746 260524 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262062 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262062 . + . insertions 0 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local splice5 262063 262064 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 262063 262133 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 262132 262133 . + . intron_id 3 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 262134 262201 . + . KQ414889.1 exonerate:protein2genome:local exon 262134 262201 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259746 262201 907 + . alignment_id 2 ; Query CbirOr23 ; Align 259746 7 96 ; Align 259845 39 633 ; Align 260481 250 42 ; Align 260783 265 99 ; Align 261734 298 111 ; Align 261926 335 90 ; Align 262017 365 45 ; Align 262136 381 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 820 Query range: 10 -> 387 Target range: 256637 -> 258624 11 : ArgSerAsnAsnAspTyrSerLeuGlnLeuThrArgTrpPheLeuIleProIleAlaA : 30 !:!||| !!!:!||||||||||||||||||!.!||||||||||||! !||||||!.!| LysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyA 256638 : AAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCG : 256695 31 : laTrpProArgAlaAlaProSerThrValGluLysIleSerLeuGlnAlaHisVal<- : 49 ||||||||! !:!!:!! !!!!!|||..! :!! !!:!:!!..! ! !:!! laTrpProProSerSerSerThrThrThrLeuGluArgAsnValSerIleValLeuAs 256696 : CATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAA : 256752 50 : >LeuAlaCysTyrLeuLeuIleValValValMetValProCysPheLeuTyrMetSer : 67 :!!!.!|||||| !! !|||:!! !!..!:!!:!!||||||!!.|||:!!:!:! ! nIleValCysTyrGlySerIleLeuPheThrLeuIleProCysLeuLeuHisValPhe 256753 : CATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTT : 256809 68 : LeuGluGluAsnAspIleGlnMetLysLeuAsnAlaMetGlyProLeuSerHisTrpI : 87 |||!!:!!::!!..!.!! ! ||||||:::... ...||||||:!!|||||||||| LeuAspAspAspSerPheTyrMetLysValLysAsnPheGlyProMetSerHisTrpI 256810 : CTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGA : 256869 88 : leMetGlyThrIleAsnTyrTrpLeuLeuLeuThrArgSerAsnAspIleArgGluCy : 106 ||!!:.!! ! !|||||| !||||||||| !!:!.!!!!.||||||||| ! || leIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCy 256870 : TCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTG : 256926 107 : sValArgHisMetGluAsnAspTrpArgLeuValGlnArgAlaAspAspGlnTrpVal : 125 ||||..!|||!!:|||!..|||||||||:!!|||::!|||! ! ! |||||| ||| sValGluHisIleGluThrAspTrpArgMetValArgArgGluLysAspGlnGlnVal 256927 : CGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTG : 256983 126 : MetLeuArgTyrAlaArgIleGlyArgPheValAlaAlaPheCysAlaValPheMetG : 145 |||:!!!:! !!||||||.!!||||||!:!||||||.!!|||||||||!.!.!!|||| MetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetG 256984 : ATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGC : 257043 146 : lnSerGlyThrLeuLeuPheGlnValValLysAlaMetThrSerMetProValValVa : 164 ||||||||...... ||| ||| !..!|||:!!!.!!!! ! !:!! !|| lnSerGlyValPheCysPhePheValSerSerAlaLeuAsnThrGluIleIleHisVa 257044 : AAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGT : 257100 165 : lGlyAsnGluThrValLeuValHisProMetThrCysProIleTyrSerLysPheVal : 183 |||||||||||||..!:!!|||!.. !:!: !! ! !!:!:|||!.!|||.!.:!! lGlyAsnGluThrThrIleValArgValLeuProValThrValTyrLysLysLeuLeu 257101 : GGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTG : 257157 184 : AspThrArgPheSerProAlaAsnGluIleMetLeuValValGlnIleLeuSerCysP : 203 :!!..! ! ||||||.!!|||||||||:!!:!! !!:!!|||! !! !|||! . AsnValAspGlnSerProThrAsnGluIleValValPheMetGlnThrTrpSerSerI 257158 : AACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGA : 257217 204 : heValValAsnSerIleThrValGlyAlaCysSerLeuAlaAlaValPheAlaMetHi : 222 !!:!!!.!!.!!!!! !||||||.!! !! !|||||||||||||||||||||! || leIleAlaThrThrSerThrValSerIlePheSerLeuAlaAlaValPheAlaThrHi 257218 : TTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCA : 257274 223 : sAlaTyrGlyGlnLeuSerMetLeuPheSerTrpLeuAsnGluLeuValAlaAsp<-> : 241 ||||||||||||||||!!!:!!|||.!.||||||:!!!..|||!!!||| !!!: sAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGluPheValAsnGluSer 257275 : TGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCG : 257331 242 : GluAspLysGlyAsnGluPheAlaAspGlnLysLeuAlaValIleValGluHisHisL : 260 ..!:!!::: ... ||| !:!!:!!:!!!.!||||||||||||||||||| ArgAsnArgGluLysThrPheProPheLysGlnIleGlyValIleValGluHisHisL 257332 : AGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATT : 257391 261 : euArgValLeu{Se} >>>> Target Intron 1 >>>> {r}PheIleSerAr : 268 |||||||||||{!!} 760 bp {!}! !:!!! ! euArgValLeu{Ar}++ +-{g}CysValMetTy 257392 : TAAGAGTGCTG{AG}gt.........................ac{G}TGCGTTATGTA : 258175 269 : gMetGluSerLeuMetGlnHisIleCysLeuValGluLeuValGlyCysThrLeuAsn : 287 ! .!. !|||...|||:!! !! ! ! ! ! !..!! ! !!:!!:!! rArgAsnLeuLeuGlnGlnAsnGly***AsnArgThrTyrAsnAsnPheProIleHis 258176 : CCGAAACCTGTTGCAACAAAATGGTTAAAATCGTACCTACAATAATTTTCCTATACAC : 258232 288 : MetCysLeuLeuAlaTyrTyrThrIleThrAsnTrpSerAsnPheAspAlaGlyArgM : 307 ! ::: :::||| ... ...||||||!.. ||| ...: SerTyrSerValIlePheTyrTyrPheGlnGluTrpSerThrGlnAspIleGlnAsnL 258233 : AGctattctgttattttttattattttcaggaATGGTCTACGCaagatattcaaaatt : 258292 308 : etThrSerTyrPhePheValTyrValSerMetAlaPheAsnIlePheIlePheCysTy : 326 :::::|||||||||.!.:!! !:!!|||::::::||||||||||||:::...||||| euSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValIleCysTy 258293 : tgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaatatgttA : 258349 327 : rIleGlyGluIleLeuThrGluGln >>>> Target Intron 2 >>>> CysL : 336 ||||||||||||||||||||||||| 90 bp |||| rIleGlyGluIleLeuThrGluGln++ ++CysL 258350 : CATAGGTGAAATATTAACAGAACAGgt.........................agTGCA : 258469 337 : ysThrValGlyGluLysAlaTyrMetThrAspTrpTyrLysLeuProHisLysThrAl : 355 ||! !||||||!!: !!.!|||||||||||||||||| ! |||||| !!|||! ! ysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIl 258470 : AGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAAT : 258526 356 : aArgGlyLeuLeuLeuIleIleAlaArgSerSerAsnValIleLysIleThrAlaGly : 374 !! !! !|||:!!|||:!!||||||||||||||| |||:!!:!!|||||||||||| eLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleThrAlaGly 258527 : ACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGgga : 258583 375 : LysLeuPheGlnLeuSerIleAlaThrPheGlyAspVal : 387 |||...|||...::!|||||| !||||||.!!|||||| LysPhePheHisMetSerIleTyrThrPheSerAspVal 258584 : aaattctttcacatGTCCATTTACACATTCAGCGATGTG : 258624 vulgar: CbirOr23 10 387 . KQ414889.1 256637 258624 + 820 M 38 114 G 0 3 M 192 576 G 0 3 M 23 69 S 0 2 5 0 2 I 0 756 3 0 2 S 1 1 M 70 210 5 0 2 I 0 86 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256638 258624 820 + . gene_id 3 ; sequence CbirOr23 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256638 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256638 257404 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 258164 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258163 258164 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 258165 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258165 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256638 258624 820 + . alignment_id 3 ; Query CbirOr23 ; Align 256638 11 114 ; Align 256755 49 576 ; Align 257334 241 69 ; Align 258166 265 210 ; Align 258466 335 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 733 Query range: 6 -> 403 Target range: 208185 -> 212084 7 : SerAsnSerCysArgSerAsnAsnAspTyrSerLeuGlnLeuThrArgTrpPheLeuI : 26 !:!!..!:!! !!:!!:!:!! ..!!:!!:!:!!!::|||!.! !||| |||! AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 27 : leProIleAlaAlaTrpProArgAlaAlaPro<->SerThrValGluLysIleSerLe : 44 !|||!.!:!!|||||||||:!! ! ! ||| !:!!|||!!.! !..!! ysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHi 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCA : 208300 45 : uGlnAlaHisValLeuAlaCysTyrLeuLeuIleValValValMetValProCysPhe : 63 ! ! !:!! ! !!:!!! !|||:!!! ! !!:!!:!!:!!||| ! ! sIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGly 208301 : TATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGC : 208357 64 : LeuTyrMetSerLeuGluGluAsnAspIleGlnMetLysLeuAsnAlaMetGlyProL : 83 :!!!:! !! !|||! !! .!.|||.!! ! :!!|||!!. ! .!! !!| MetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaL 208358 : ATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTC : 208417 84 : euSerHisTrpIleMetGlyThrIleAsnTyrTrpLeuLeuLeuThrArgSerAsnAs : 102 ||||| !!::!!:|||!.! !! !!.||| !:!!:!! !..!|||..!..!|| euSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAs 208418 : TGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGA : 208474 103 : pIleArgGluCysValArgHisMetGluAsnAspTrpArgLeuValGlnArgAlaAsp : 121 |||||||:!!||||||..!:!!:!:||| !||||||||| !|||:!!!.!! !!!: pIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGlu 208475 : CATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAG : 208531 122 : AspGlnTrpValMetLeuArgTyrAlaArgIleGlyArgPheValAlaAlaPheCysA : 141 |||::! !:!!|||||| ! !!|||!!!.!!!.!||| :!! !!.!.!.|||! AspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysG 208532 : GACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCG : 208591 142 : laValPheMetGlnSerGlyThrLeuLeuPheGlnValValLysAlaMetThrSerMe : 160 .!!.!|||||| ! .!!|||...:::...::: :!!!.! ! !!:!:||| !! lyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAs 208592 : GAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGA : 208648 161 : tProValValValGlyAsnGluThrValLeuValHisProMetThrCysProIleTyr : 179 !||||||! !! !..!! !.!:!! ! !... !:!!..!! !|||:!! ! pLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValPro 208649 : CAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCT : 208705 180 : SerLysPheValAspThrArgPheSerProAlaAsnGluIleMetLeuValValGlnI : 199 !.! .!!:!!|||..!|||!:!||||||!.!|||||||||.!.! !..!||||||: LysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnL 208706 : AAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAAT : 208765 200 : leLeuSerCysPheValValAsnSerIleThrValGlyAlaCysSerLeuAlaAlaVa : 218 !:|||||| !!||||||!.!:!!!:!||||||||||||||||||.!!|||||||||:! euLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLe 208766 : TGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCT : 208822 219 : lPheAlaMetHisAlaTyrGlyGlnLeuSerMetLeuPheSerTrpLeuAsnGluLeu : 237 !.!!||||||||||||! !|||||||||..!!!:|||.!.||||||:!!.!.:!!||| uLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeu 208823 : GCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTG : 208879 238 : ValAlaAspGluAspLysGlyAsnGluPheAlaAspGlnLysLeuAlaValIleValG : 257 |||! !! ..!!!: ! ! !.!.:!! ! !||||||!:!|||||| !||||||| ValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleValG 208880 : GTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCGTGG : 208939 258 : luHisHisLeuArgValLeu{Se} >>>> Target Intron 1 >>>> {r}Ph : 265 ||!!.|||:!!||||||:!!{!:} 1536 bp {!}|| luGlnHisValArgValIle{As}++ ++{n}Ph 208940 : AGCAGCATGTTCGAGTGATC{AA}gt.........................ag{T}TT : 210499 266 : eIleSerArgMetGluSerLeuMetGlnHisIleCysLeuValGluLeuValGlyCys : 284 ||||:!!! !! |||!:!|||:!!!!..!.|||! |||:!!|||:!!||||||||| eIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGluMetValGlyCys 210500 : TATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAATGGTGGGGTGC : 210556 285 : ThrLeuAsnMetCysLeuLeuAlaTyrTyrThrIleThr >>>> Target Intro : 298 |||||||||||||||!!!|||!.!|||||||||!!:! ! 66 bp ThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210557 : ACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt................. : 210600 299 : n 2 >>>> AsnTrpSerAsnPheAspAlaGlyArgMetThrSerTyrPhePheVal : 313 .!.|||..!::! ||| !! !!!!! !!!!|||.!. ! :!! ++GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValLeu 210601 : ........agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTACTC : 210709 314 : TyrValSerMetAlaPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrG : 333 !..!|||:!:.!!|||||||||||||||||||||||||||||||||:!:|||.!!| LeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAlaG 210710 : CTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGCTG : 210769 334 : luGln >>>> Target Intron 3 >>>> CysLysThrValGlyGluLysAla : 342 ||||| 999 bp !! !||||||||||||:!! luGln++ ++ThrValLysValGlyGluLysSer 210770 : AACAggt.........................agACAGTAAAAGTTGGAGAAAAGTCT : 211795 343 : TyrMetThrAspTrpTyrLysLeuProHisLysThrAlaArgGlyLeuLeuLeuIleI : 362 ||||||! !|||||||||::!:!!||| |||! !!.! !! !:!!! !|||!!:| TyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValValProLeuMetI 211796 : TACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGATGA : 211855 363 : leAlaArgSerSerAsnValIleLysIleThrAlaGlyLysLeuPheGlnLeuSerIl : 381 ||:!!! !||| !:::..!! !|||||||||||||||!!.|||.!! |||||||| leSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleValLeuSerIl 211856 : TCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTTCTTTCAAT : 211912 382 : eAlaThrPheGlyAsp >>>> Target Intron 4 >>>> ValIleLysThrS : 391 |::!!:!||||||||| 104 bp ||||||||||||| eSerSerPheGlyAsp++ ++ValIleLysThrS 211913 : CAGTAGTTTCGGTGACgt.........................agGTTATCAAGACTT : 212046 392 : erValIleTyrLeuAsnLeuIleArgThrMetThrSer : 403 |||||! !|||||||||:!!:!!||||||.!.|||!!! erValThrTyrLeuAsnMetLeuArgThrPheThrThr 212047 : CGGTAACATACTTGAACATGCTACGAACATTCACAACC : 212084 vulgar: CbirOr23 6 403 . KQ414889.1 208185 212084 + 733 M 30 90 G 0 3 M 227 681 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 995 3 0 2 M 52 156 5 0 2 I 0 100 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 212084 733 + . gene_id 4 ; sequence CbirOr23 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208186 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208961 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211929 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 211930 211931 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 211930 212033 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 212032 212033 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 212034 212084 . + . KQ414889.1 exonerate:protein2genome:local exon 212034 212084 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208186 212084 733 + . alignment_id 4 ; Query CbirOr23 ; Align 208186 7 90 ; Align 208279 37 681 ; Align 210499 265 99 ; Align 210664 298 111 ; Align 211774 335 156 ; Align 212034 387 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 688 Query range: 15 -> 397 Target range: 284523 -> 287252 16 : TyrSerLeuGlnLeuThrArgTrpPheLeuIleProIleAlaAlaTrpProArgAla< : 35 ||||||:!!|||:!!!.!||||||||||||! !||||||!.!!.!||||||! !::! TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 36 : ->AlaProSerThrValGluLysIleSerLeuGlnAlaHisValLeuAlaCysTyrLe : 53 ..! !!!!|||:!!||||||||||||! ! !!.!! !!.!||| ! !!! !!! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 54 : uLeuIleValValValMetValProCysPheLeuTyrMetSerLeuGluGlu<->Asn : 71 !||||||! ! !!:!!:!!||||||||| !|||! !! !|||!!::!! ..! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 72 : AspIleGlnMetLysLeuAsnAlaMetGlyProLeuSerHisTrpIleMetGlyThrI : 91 |||:!!.!.! !|||:!!!!. !!!:|||||||||||| !!! !!:|||!.!.!!| AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 92 : leAsnTyrTrpLeuLeuLeuThrArgSerAsnAspIleArgGluCysValArgHisMe : 110 ||!!.|||!:::!!|||:!!:!!|||.!!..! ! ||| !!:!!||||||!:! !!!! leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 111 : tGluAsnAspTrpArgLeuVal<-><-><->GlnArgAlaAspAspGlnTrpValMet : 126 :... |||||| !|||..! ...::: ::::::::: :::||| eArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMet 284813 : TCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTG : 284869 127 : LeuArgTyrAlaArgIleGlyArgPheValAlaAlaPheCysAlaValPheMetGlnS : 146 ! ! !|||||||||||||||! !:!!||| !|||||||||! !|||||| ! | ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrS 284870 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATT : 284929 147 : erGlyThrLeuLeuPheGlnValValLysAlaMetThrSerMetProValValValGl : 165 ||||| !!!!!!!!:! ..!|||! ! !!:!! !!!!:!:! !..!! !:!! erGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIle-- 284930 : CCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATC-- : 284986 166 : yAsnGluThrValLeuValHisProMetThrCysProIleTyrSerLysPheValAsp : 184 ! !!!:!.!! ! !|||... !!....!!! !||||||||| !! .!!:!!||| -IleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAsp 284987 : -ATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGAT : 285040 185 : ThrArgPheSerProAlaAsnGluIleMetLeuValValGlnIleLeuSerCysPheV : 204 !!||| !||||||:!! !||||||:!!! ! !!:!!||| !|||:!!...|||| ProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheV 285041 : CCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCG : 285100 205 : alValAsnSerIleThrValGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAl : 223 ||:!! !!|||:!!|||||||||||||||||||||||||||||||||!.!||||||!. alIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisVa 285101 : TTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGT : 285157 224 : aTyrGlyGlnLeuSerMetLeuPheSerTrpLeuAsnGluLeuVal<-><->AlaAsp : 240 !! !||||||!!!!!!!!:||| ! !!! !|||:!!:!!|||||| !.! ! lCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLys 285158 : CTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAA : 285214 241 : GluAspLysGlyAsnGluPheAlaAspGlnLysLeuAlaValIleValGluHisHisL : 260 ! ! |||||| ... !!!:|||::!|||!.!! !|||:!!|||||||||| GlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisL 285215 : GGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATC : 285274 261 : euArgValLeu{Se} >>>> Target Intron 1 >>>> {r}PheIleSerAr : 268 ||!:!:!!|||{.!} 1411 bp {!}|||||||||!: euLysIleLeu{Gl}++ ++{y}PheIleSerGl 285275 : TGAAGATACTG{GG}gt.........................ag{T}TTTATATCGCA : 286709 269 : gMetGluSerLeuMetGlnHisIleCysLeuValGluLeuValGlyCysThrLeuAsn : 287 !!!:|||.!!|||:!:.!..!.||||||!!!||||||:!!:!!||||||||||||||| nIleGluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsn 286710 : AATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAAC : 286766 288 : MetCysLeuLeuAlaTyrTyrThrIleThr >>>> Target Intron 2 >>>> : 298 !!:|||!!!|||!.!|||||| !:!:||| 80 bp IleCysPheLeuGlyTyrTyrLeuLeuThr++ + 286767 : ATATGCTTTTTGGGATATTATTTACTGACGgt.........................a : 286877 299 : AsnTrpSerAsnPheAspAlaGlyArgMetThrSerTyrPhePheValTyrValSer : 316 .!.|||..!.!. !!!:.!! ! !!! !! !!!!|||! ! :!! |||||| +GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSer 286878 : gGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCT : 286933 317 : MetAlaPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGln >> : 335 .!..!!||||||:!!||||||.!!|||||||||||||||||||||:!!|||||| PheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286934 : TTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt.. : 286992 336 : >> Target Intron 3 >>>> CysLysThrValGlyGluLysAlaTyrMetThr : 345 74 bp ||| !! !|||||| !..!.!!||||||! ! ++CysLeuLysValGlyLeuSerThrTyrMetIle 286993 : .......................agtGCTTAAAAGTCGGCTTGTCAACTTACATGATC : 287094 346 : AspTrpTyrLysLeuProHisLysThrAlaArgGlyLeuLeuLeuIleIleAlaArgS : 365 |||||||||:::|||||| |||||||||!:!||||||:!!||||||.!!||| !| AspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValS 287095 : GACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGT : 287154 366 : erSerAsnValIleLysIleThrAlaGlyLysLeuPheGlnLeuSerIleAlaThrPh : 384 ||!:!::! !||||||:!!||||||||||||:!!.!!.!.||||||:!!::!!:!|| erAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPh 287155 : CGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTT : 287211 385 : eGlyAspValIleLysThrSerValIleTyrLeuAsnLeu : 397 | !!..!|||! !! ! !!:!:!! !|||! !:!!||| eCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 287212 : CTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 287252 vulgar: CbirOr23 15 397 . KQ414889.1 284523 287252 + 688 M 19 57 G 0 3 M 36 108 G 0 3 M 47 141 G 0 9 M 47 141 G 1 0 M 73 219 G 0 6 M 25 75 S 0 2 5 0 2 I 0 1407 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 287252 688 + . gene_id 5 ; sequence CbirOr23 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284524 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 285287 . + . insertions 21 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286698 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284524 287252 688 + . alignment_id 5 ; Query CbirOr23 ; Align 284524 16 57 ; Align 284584 35 108 ; Align 284695 71 141 ; Align 284845 118 141 ; Align 284986 166 219 ; Align 285211 239 75 ; Align 286700 265 99 ; Align 286879 298 111 ; Align 287064 335 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 674 Query range: 15 -> 397 Target range: 278576 -> 280465 16 : TyrSerLeuGlnLeuThrArgTrpPheLeuIleProIleAlaAlaTrpProArgAla< : 35 ||||||:!!|||:!!!.!||||||||||||! !||||||!.!!.!||||||! !::! TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 36 : ->AlaProSerThrValGluLysIleSerLeuGlnAlaHisValLeuAlaCysTyrLe : 53 ..! !!!!|||:!!||||||||||||! ! !!.!! !!.!||| ! !!! !!! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 54 : uLeuIleValValValMetValProCysPheLeuTyrMetSerLeuGluGlu<->Asn : 71 !||||||! ! !!:!!:!!||||||||| !|||! !! !|||!!::!! ..! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 72 : AspIleGlnMetLysLeuAsnAlaMetGlyProLeuSerHisTrpIleMetGlyThrI : 91 |||:!!.!.! !|||:!!!!. !!!:|||||||||||| !!! ! |||!.!|||| AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 92 : leAsnTyrTrpLeuLeuLeuThrArgSerAsnAspIleArgGluCysValArgHisMe : 110 ||!!.|||!:::!!|||:!!:!!|||.!!..! ! ||| !!:!!||||||!.! !!!! leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 111 : tGluAsnAspTrpArgLeuVal<-><-><->GlnArgAlaAspAspGlnTrpValMet : 126 :...!..|||||| !|||..! !::::: ::::::::: :::||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 127 : LeuArgTyrAlaArgIleGlyArgPheValAlaAlaPheCysAlaValPheMetGlnS : 146 ! ! !|||||||||||||||! !:!!||| !||| !!|||! !|||||| ! | ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 147 : erGlyThrLeuLeuPheGlnValValLysAlaMetThrSerMetProValValValGl : 165 ||||| !:!!!!!!:! !.!|||! ! !!:!! !:!!:!:! !..!! !:!! erGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIle-- 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATC-- : 279039 166 : yAsnGluThrValLeuValHisProMetThrCysProIleTyrSerLysPheValAsp : 184 ! !!!:!.!! ! !|||... !!....!!! !||||||||| !! .!!:!!||| -IleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAsp 279040 : -ATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGAT : 279093 185 : ThrArgPheSerProAlaAsnGluIleMetLeuValValGlnIleLeuSerCysPheV : 204 !!||| !||||||:!! !||||||:!!! ! !!:!!||| !|||:!!...|||| ProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheV 279094 : CCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCG : 279153 205 : alValAsnSerIleThrValGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAl : 223 ||:!! !!|||:!!||||||||||||||||||||| !|||||||||!.!||||||!. alLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisVa 279154 : TTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGT : 279210 224 : aTyrGlyGlnLeuSerMetLeuPheSerTrpLeuAsnGluLeuVal<-><->AlaAsp : 240 !! !||||||!!!!!!!!:||| ! !!! !|||:!!:!!|||:!! !.! ! lCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLys 279211 : CTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAA : 279267 241 : GluAspLysGlyAsnGluPheAlaAspGlnLysLeuAlaValIleValGluHisHisL : 260 ! ! |||.!! ... !!!:|||::!|||!.!! !|||:!!|||||||||| GlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisL 279268 : GGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATC : 279327 261 : euArgValLeu{Se} >>>> Target Intron 1 >>>> {r}PheIleSerAr : 268 ||!:!:!!|||{.!} 571 bp {!}|||||||||!: euLysIleLeu{Gl}++ ++{y}PheIleSerGl 279328 : TGAAGATACTG{GG}gt.........................ag{T}TTTATATCGCA : 279922 269 : gMetGluSerLeuMetGlnHisIleCysLeuValGluLeuValGlyCysThrLeuAsn : 287 !!!:|||.!!|||:!!.!..!.||||||!!!||||||:!!:!!||||||||||||||| nIleGluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsn 279923 : AATCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAAC : 279979 288 : MetCysLeuLeuAlaTyrTyrThrIleThr >>>> Target Intron 2 >>>> : 298 !!:|||!!!|||.!!|||||| !:!!||| 80 bp IleCysPheLeuThrTyrTyrLeuLeuThr++ + 279980 : ATATGCTTTTTGACATATTATTTACTCACGgt.........................a : 280090 299 : AsnTrpSerAsnPheAspAlaGlyArgMetThrSerTyrPhePheValTyrValSer : 316 .!.|||..!.!. !|||||| ! !!! ! !!!!|||!!..!. !! !:!!||| +GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleSer 280091 : gGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCT : 280146 317 : MetAlaPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGln >> : 335 :!:.!!||||||:!!||||||.!!|||||||||||||||||||||:!!|||||| LeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 280147 : TTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt.. : 280205 336 : >> Target Intron 3 >>>> CysLysThrValGlyGluLysAlaTyrMetThr : 345 74 bp ||| !! !||||||! !..!.!!||||||! ! ++CysLeuLysValGlyValSerThrTyrMetIle 280206 : .......................agTGCTTAAAAGTCGGCGTGTCAACTTACATGATC : 280307 346 : AspTrpTyrLysLeuProHisLysThrAlaArgGlyLeuLeuLeuIleIleAlaArgS : 365 |||||||||:::|||||| |||! !|||!:!||||||:!!||||||.!!||| !| AspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaValS 280308 : GACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCGTGT : 280367 366 : erSerAsnValIleLysIleThrAlaGlyLysLeuPheGlnLeuSerIleAlaThrPh : 384 ||!:!::! !||||||:!!||||||||||||:!!.!!.!.||||||:!!::!!:!|| erAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPh 280368 : CGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTT : 280424 385 : eGlyAspValIleLysThrSerValIleTyrLeuAsnLeu : 397 | !!..!|||! !! ! !!:!:!! !|||! !:!!||| eCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280425 : CTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: CbirOr23 15 397 . KQ414889.1 278576 280465 + 674 M 19 57 G 0 3 M 36 108 G 0 3 M 47 141 G 0 9 M 47 141 G 1 0 M 73 219 G 0 6 M 25 75 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 280465 674 + . gene_id 6 ; sequence CbirOr23 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278577 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279340 . + . insertions 21 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278577 280465 674 + . alignment_id 6 ; Query CbirOr23 ; Align 278577 16 57 ; Align 278637 35 108 ; Align 278748 71 141 ; Align 278898 118 141 ; Align 279039 166 219 ; Align 279264 239 75 ; Align 279913 265 99 ; Align 280092 298 111 ; Align 280277 335 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 643 Query range: 8 -> 263 Target range: 266616 -> 267387 9 : SerCysArgSerAsnAsnAspTyrSerLeuGlnLeuThrArgTrpPheLeuIleProI : 28 !:! !.!||| !:!||||||||||||||||||!.!||||||||||||! !|||| AsnLeuAsnSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 266617 : AATCTAAACAGTCTGAGCGATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTA : 266674 29 : leAlaAlaTrp<->ProArgAlaAlaProSerThrValGluLysIleSerLeuGlnAl : 46 ||!.!|||||| ||| !:!! ! !!|||! !:!!|||::!||| !! ! ! || leGlyAlaTrpProProLeuSerLeuThrSerLysLeuGluArgIleValSerTyrAl 266675 : TAGGCGCTTGGCCGCCGTTGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGC : 266731 47 : aHisValLeuAlaCysTyrLeuLeuIleValValValMetValProCysPheLeuTyr : 65 | :!!:!! !||||||! !! !|||:!! !!..!:!::!!||||||!!.!!!:!! aLeuIleValIleCysTyrCysSerIleLeuPheThrValIleProCysLeuPheHis 266732 : TTTGATCGTCATCTGCTACTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCAT : 266788 66 : MetSerLeuGluGluAsnAspIleGlnMetLysLeuAsnAlaMetGlyProLeuSerH : 85 :!: !||||||!!:.!...!|||!::! !|||:!!!!.!.!.!.||||||||||||| LeuValLeuGluAspGluSerIleArgThrLysValLysValPheGlyProLeuSerH 266789 : CTCGTTCTGGAGGACGAGAGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCC : 266848 86 : isTrpIleMetGlyThrIleAsnTyrTrpLeuLeuLeuThrArgSerAsnAspIleAr : 104 |||||.!!:!:||| !||||||||| !|||||| !||||||!!.!!:||||| isTrpPheValGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleAr 266849 : ATTGGTTCGTCGGAGGAATTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACG : 266905 105 : gGluCysValArgHisMetGluAsnAspTrpArgLeuValGlnArgAlaAspAspGln : 123 |! ||||||..!||||||:!!!..|||||||||:!!||| ||| !!!!:|||:!! gGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAspLys 266906 : CGGTTGCGTAGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAG : 266962 124 : TrpValMetLeuArgTyrAlaArgIleGlyArgPheValAlaAlaPheCysAlaValP : 143 !|||||||||!:! !!|||||||||||||||!:!:!!||| !|||||||||!.!| GlnValMetLeuLysAsnAlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaP 266963 : CAGGTGATGTTGAAGAACGCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGT : 267022 144 : heMetGlnSerGlyThrLeuLeuPheGlnValValLysAlaMetThrSerMetProVa : 162 ||||||||!!!|||..!||| !!:! |||:!!! !|||.!.|||! !..! !!|| heMetGlnCysGlyValLeuGlyTyrCysValIleThrAlaPheThrMetGlnThrVa 267023 : TCATGCAATGCGGTGTTCTCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGT : 267079 163 : lValValGlyAsnGluThrValLeuValHisProMetThrCysProIleTyrSerLys : 181 |! !||||||||||||||| !:!!||||||! !:!! !!||| !!:!!|||!.!||| lGluValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaValTyrLysLys 267080 : GGAAGTCGGTAACGAGACTAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAG : 267136 182 : PheValAspThrArgPheSerProAlaAsnGluIleMetLeuValValGlnIleLeuS : 201 .!.:!!! ..! ! !||||||.!!|||||||||:!:|||||| !|||.!!:!!| MetIleAlaValAspThrSerProThrAsnGluIleValLeuValSerGlnPheValS 267137 : ATGATCGCAGTTGATACCAGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTAT : 267196 202 : erCysPheValValAsnSerIleThrValGlyAlaCysSerLeuAlaAlaValPheAl : 220 || ! |||:!!|||||||||! !..!|||||||||! !|||||||||||||||||||| erGlyPheIleValAsnSerSerValValGlyAlaPheSerLeuAlaAlaValPheAl 267197 : CAGGATTCATCGTGAATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGC : 267253 221 : aMetHisAlaTyrGlyGlnLeuSerMetLeuPheSerTrpLeuAsnGluLeuVal<-> : 239 | ||||||! !||||||||||||:!!|||.!.! !|||:!!!!.|||!!!||| aAlaHisAlaCysGlyGlnLeuSerValLeuMetMetTrpIleLysGluPheValAsn 267254 : GGCTCACGCGTGCGGACAGCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAAC : 267310 240 : AlaAspGluAspLysGlyAsnGluPheAlaAspGlnLysLeuAlaValIleValGluH : 258 !..!..!|||!....!!!..!. !!..! !.!.|||:!!!.!|||:!!||||||| ArgSerArgAspSerAsnLysAsnValCysPheAspLysIleGlyValValValGluH 267311 : CGATCCAGAGATAGCAATAAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAAC : 267370 259 : isHisLeuArgValLeu : 263 ||||||||||||||||| isHisLeuArgValLeu 267371 : ATCATCTGAGAGTTTTG : 267387 vulgar: CbirOr23 8 263 . KQ414889.1 266616 267387 + 643 M 23 69 G 0 3 M 207 621 G 0 3 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266617 267387 643 + . gene_id 7 ; sequence CbirOr23 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266617 267387 . + . KQ414889.1 exonerate:protein2genome:local exon 266617 267387 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266617 267387 643 + . alignment_id 7 ; Query CbirOr23 ; Align 266617 9 69 ; Align 266689 32 621 ; Align 267313 239 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 633 Query range: 4 -> 263 Target range: 274350 -> 275133 5 : AsnLysSerAsnSerCysArgSerAsnAsnAspTyrSerLeuGlnLeuThrArgTrpP : 24 ||| !!!! !:!! ! !||| !!:!||||||||||||||||||!.!||||||| AsnValThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpP 274351 : AACGTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGT : 274408 25 : heLeuIleProIleAlaAlaTrpProArgAlaAlaProSerThr<->ValGluLysIl : 42 |||||! ||||||!.!||||||||| !|||:!!|||!!!||| !!|||::!|| heLeuLysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIl 274409 : TCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAAT : 274465 43 : eSerLeuGlnAlaHisValLeuAlaCysTyrLeuLeuIleValValValMetValPro : 61 | !! !!!. :::... ||||||! !!!!|||:!! !..!:!::!!||| eLeuSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIlePro 274466 : CCTTTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCA : 274522 62 : CysPheLeuTyrMetSerLeuGluGluAsnAspIleGlnMetLysLeuAsnAlaMetG : 81 !!.!.!!!:!!!!:! !|||! !!!:.!...!:!!!!.:!!||||||!!. !:!:| SerIlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuG 274523 : AGCATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCG : 274582 82 : lyProLeuSerHisTrpIleMetGlyThrIleAsnTyrTrpLeuLeuLeuThrArgSe : 100 ||||||||.!!||||||.!!!!:||| !||||||||| !|||||| !||||| lyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSe 274583 : GTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAG : 274639 101 : rAsnAspIleArgGluCysValArgHisMetGluAsnAspTrpArgLeuValGlnArg : 119 |!!.!!:||||||! ||||||..!||||||:!!!..|||||||||:!!||| ||| rLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArg 274640 : CAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGA : 274696 120 : AlaAspAspGlnTrpValMetLeuArgTyrAlaArgIleGlyArgPheValAlaAlaP : 139 !!!!:|||||| |||||||||!:! !!|||!:!|||||||||!:!|||||| !| ProGluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIleP 274697 : CCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCT : 274756 140 : heCysAlaValPheMetGlnSerGlyThrLeuLeuPheGlnValValLysAlaMetTh : 158 ||||||||!.!|||||||||!!!|||..!|||! !!:! |||:!!! !|||.!.|| heCysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheTh 274757 : TCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCAC : 274813 159 : rSerMetProValValValGlyAsnGluThrValLeuValHisProMetThrCysPro : 177 |! !..! !!||| !||||||||||||||| ! !|||||| !:!! !!||| ! rMetGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLys 274814 : TATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAA : 274870 178 : IleTyrSerLysPheValAspThrArgPheSerProAlaAsnGluIleMetLeuValV : 197 !|||!.!|||.!!|||! ..! ! ||||||.!!|||||||||:!:|||!.! AlaTyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValLeuAlaS 274871 : GCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCT : 274930 198 : alGlnIleLeuSerCysPheValValAsnSerIleThrValGlyAlaCysSerLeuAl : 216 !|||.!!:!!||| ! |||:!!|||||||||! !.!!|||||||||! !|||||||| erGlnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAl 274931 : CGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGC : 274987 217 : aAlaValPheAlaMetHisAlaTyrGlyGlnLeuSerMetLeuPheSerTrpLeuAsn : 235 ||||||||||||| |||||||||||||||||||||:!!|||.!.! !|||:!!!.! aAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThr 274988 : CGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACC : 275044 236 : GluLeuVal<->AlaAspGluAspLysGlyAsnGluPheAlaAspGlnLysLeuAlaV : 254 |||!!!||| !..!..!|||:::......... ...:!!:!!!.!| GluPheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyV 275045 : GAGTTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCG : 275104 255 : alIleValGluHisHisLeuArgValLeu : 263 ||:!!|||||||||||||||||||||||| alValValGluHisHisLeuArgValLeu 275105 : TGGTTGTCGAACATCATCTGAGGGTACTC : 275133 vulgar: CbirOr23 4 263 . KQ414889.1 274350 275133 + 633 M 34 102 G 0 3 M 200 600 G 0 3 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274351 275133 633 + . gene_id 8 ; sequence CbirOr23 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274351 275133 . + . KQ414889.1 exonerate:protein2genome:local exon 274351 275133 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274351 275133 633 + . alignment_id 8 ; Query CbirOr23 ; Align 274351 5 102 ; Align 274456 39 600 ; Align 275059 239 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 561 Query range: 0 -> 263 Target range: 262804 -> 263599 1 : MetThrLysArgAsnLysSerAsnSerCysArgSerAsnAsnAspTyrSerLeuGlnL : 20 :!:|||! !! !:!! ! !.!.|||! ! !!||| !!:!|||||||||||||||: ValThrMetThrAspAspLeuGluSerPheGlySerLeuSerAspTyrSerLeuGlnI 262805 : GTCACGATGACCGACGACCTGGAAAGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGA : 262862 21 : euThrArgTrpPheLeuIleProIleAlaAlaTrpProArgAlaAlaPro<->SerTh : 38 !!!.!||||||.!.|||! !||||||!.!|||||||||! !:!!||| !! |||! leAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerAlaSerIleSerAr 262863 : TAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAG : 262919 39 : rValGluLysIleSerLeuGlnAlaHisValLeuAlaCysTyrLeuLeuIleValVal : 57 !:!!|||::!|||! !! ! ! :!!:!!!.!||||||! !||||||:!! ! gMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCysLeuIleLeuSer 262920 : AATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCC : 262976 58 : ValMetValProCysPheLeuTyrMetSerLeuGluGluAsnAspIleGlnMetLysL : 77 ..!:!::!!|||! !.!.|||:!!!!: !||||||! .!.:!!.!!!!.||||||| ThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsnPheHisMetLysL 262977 : ACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGC : 263036 78 : euAsnAlaMetGlyProLeuSerHisTrpIleMetGlyThrIleAsnTyrTrpLeuLe : 96 ||.!.!.!:!:|||||||||.!!!!.|||.!!:!:|||! !||||||||| ! !|| euGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleAsnTyrThrTrpLe 263037 : TGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTT : 263093 97 : uLeuThrArgSerAsnAspIleArgGluCysValArgHisMetGluAsnAspTrpArg : 115 |||| !!.!|||!!.||||||!:!! ||||||!:!|||:!!:!!.!.|||||| !! uLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGlnGluAspTrpCys 263094 : GTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGT : 263150 116 : LeuValGlnArgAlaAspAspGlnTrpValMetLeuArgTyrAlaArgIleGlyArgP : 135 :!!||| ||| !!!:|||||| ! :!!||||||!:! !!|||!:! !||||||! IleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAlaLysTyrGlyArgT 263151 : ATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCGAAATACGGCCGCT : 263210 136 : heValAlaAlaPheCysAlaValPheMetGlnSerGlyThrLeuLeuPheGlnValVa : 154 :!|||||||||! !||||||:!!|||||||||!!!.!!! !:!!! ! :!!|| yrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetCysLysCysLeuVa 263211 : ACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGT : 263267 155 : lLysAlaMetThrSerMetProValValValGlyAsnGluThrValLeuValHisPro : 173 |! !|||.!.|||!!!..! !:!!! !! !|||||||||||| !:!!:!!!.! ! lThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrArgIleLeuArgMet 263268 : CACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAGAATTCTACGTATG : 263324 174 : MetThrCysProIleTyrSerLysPheValAspThrArgPheSerProAlaAsnGluI : 193 :!: !!||||||:!:|||!.!:!!.!!:!! ..! ! !:!|||.!!||||||| LeuProCysProValTyrLysGluIleIleProValAspThrAsnProThrAsnGluI 263325 : CTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAATCCGACGAACGAGA : 263384 194 : leMetLeuValValGlnIleLeuSerCysPheValValAsnSerIleThrValGlyAl : 212 ||.!.|||!.!..!|||.!!|||||| !!|||:!!|||!.!:!!! !||||||||||| lePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaThrThrValGlyAl 263385 : TCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGC : 263441 213 : aCysSerLeuAlaAlaValPheAlaMetHisAlaTyrGlyGlnLeuSerMetLeuPhe : 231 |! !.!!:!!.!!|||||||||||| ||||||! !|||||||||!:!:!!|||.!. aPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMet 263442 : TTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATG : 263498 232 : SerTrpLeuAsnGluLeuVal<->AlaAspGluAspLysGlyAsnGluPheAlaAspG : 250 ||||||:!!!..|||!!!||| !..!..!|||:!!..!!!..!..!! ! ! SerTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLysAsnLeuTyrPheT 263499 : TCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTA : 263558 251 : lnLysLeuAlaValIleValGluHisHisLeuArgValLeu : 263 :!!:!!!.!|||||||||||||||||||||||||||||| hrGluIleGlyValIleValGluHisHisLeuArgValLeu 263559 : CCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTG : 263599 vulgar: CbirOr23 0 263 . KQ414889.1 262804 263599 + 561 M 36 108 G 0 3 M 202 606 G 0 3 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262805 263599 561 + . gene_id 9 ; sequence CbirOr23 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262805 263599 . + . KQ414889.1 exonerate:protein2genome:local exon 262805 263599 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262805 263599 561 + . alignment_id 9 ; Query CbirOr23 ; Align 262805 1 108 ; Align 262916 37 606 ; Align 263525 239 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 467 Query range: 10 -> 266 Target range: 221363 -> 222134 11 : ArgSerAsnAsnAspTyrSerLeuGlnLeuThrArgTrpPheLeuIleProIleAlaA : 30 !:!!!!||| ! ! |||:!!||||||!:!||||||.!!|||! ||||||!.!! LysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleGlyV 221364 : AAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTG : 221421 31 : laTrpProArgAlaAlaPro<->SerThrValGluLysIleSerLeuGlnAlaHisVa : 48 .!||||||!.!:!!||| ! ||||||||||||!:! ! !! ! ! ! alTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLeuIleAs 221422 : TTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAA : 221478 49 : lLeuAlaCysTyrLeuLeuIleValValValMetValProCysPheLeuTyrMetSer : 67 !:!!!.!|||||| !||||||..! !!:!!:!!||||||||| !||||||:!!! ! nValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyrValIle 221479 : CGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATC : 221535 68 : LeuGluGluAsnAspIleGlnMetLysLeuAsnAlaMetGlyProLeuSerHisTrpI : 87 ||||||! !.!.|||:!! ! ! !:!:!!!!. !:!!|||||||||||| !!! : LeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysV 221536 : CTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCG : 221595 88 : leMetGlyThrIleAsnTyrTrpLeuLeuLeuThrArgSerAsnAspIleArgGluCy : 106 !:|||!.! !:!!!!.||| ||||||:!! ! !..!||||||||||||||||| alMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCy 221596 : TGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTG : 221652 107 : sValArgHisMetGluAsnAspTrpArgLeuValGlnArgAlaAspAspGlnTrpVal : 125 |:!!..!!.!!!:||| ||||||!:! !:!! !:!! ! |||:!! :!! sIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLysAspIle 221653 : CATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAGGATATA : 221709 126 : MetLeuArgTyrAlaArgIleGlyArgPheValAlaAlaPheCysAlaValPheMetG : 145 |||:!!..! !!|||! !.!!|||||| :!! ! !.!!|||.!! !!|||||| MetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheMetT 221710 : ATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGT : 221769 146 : lnSerGlyThrLeuLeuPheGlnValValLysAlaMetThrSerMetProValValVa : 164 ! |||||| :::...::: ::!!.!! ! !!.!.!:! ! !:!! !!. yrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIleProAl 221770 : ACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGC : 221826 165 : lGlyAsnGluThrValLeuValHisProMetThrCysProIleTyrSerLysPheVal : 183 ! !:!! ...||| ||||||..!! !|||.!!! !!! .!!||| aGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPheIleVal 221827 : GCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTC : 221883 184 : AspThrArgPheSerProAlaAsnGluIleMetLeuValValGlnIleLeuSerCysP : 203 |||||||||!:!||||||!.!|||||||||:!!!!! !:!!||||||:!!:!! !! AspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyA 221884 : GATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTG : 221943 204 : heValValAsnSerIleThrValGlyAlaCysSerLeuAlaAlaValPheAlaMetHi : 222 !:!!:!!:!!||||||||| !!.!||||||||||||!.!|||:!!||||||:!!|| laLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaValHi 221944 : CTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCA : 222000 223 : sAlaTyrGlyGlnLeuSerMetLeuPheSerTrpLeuAsnGluLeuValAlaAspGlu : 241 ||||! !||||||:!!..!:!!|||.!.|||||||||!!..!.|||:!! !! !..! sAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsnGlyArg 222001 : CGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGCCGG : 222057 242 : AspLysGlyAsnGluPheAlaAspGlnLysLeuAlaValIleValGluHisHisLeuA : 261 ! ! ! !.!. !!.!|||::!!:!:!!||| !||||||.!.!!.|||:!!| AlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnHisValA 222058 : GCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAACACGTTC : 222117 262 : rgValLeuSerPheIle : 266 ||:!!|||..!!:!:!! rgIleLeuGlnTyrVal 222118 : GAATATTGCAGTATGTA : 222134 vulgar: CbirOr23 10 266 . KQ414889.1 221363 222134 + 467 M 26 78 G 0 3 M 230 690 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221364 222134 467 + . gene_id 10 ; sequence CbirOr23 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221364 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221364 222134 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221364 222134 467 + . alignment_id 10 ; Query CbirOr23 ; Align 221364 11 78 ; Align 221445 37 690 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 431 Query range: 10 -> 266 Target range: 217159 -> 217930 11 : ArgSerAsnAsnAspTyrSerLeuGlnLeuThrArgTrpPheLeuIleProIleAlaA : 30 ......||| ::: |||:!!|||! !!.!||||||!!.|||! !|||!!:!.! GluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyL 217160 : gagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTC : 217217 31 : laTrpProArgAlaAlaProSerThrValGluLysIleSerLeuGlnAlaHisValLe : 49 !||||||!.!:!! ! !!!!!||| !...::!! !! !||| ! !! :!! euTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAs 217218 : TTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAA : 217274 50 : uAla<->CysTyrLeuLeuIleValValValMetValProCysPheLeuTyrMetSer : 67 !||| |||||| !|||||| ! !!:!!.!.|||||||||! !:!!|||:!!! ! nAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPhe 217275 : CGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTC : 217331 68 : LeuGluGluAsnAspIleGlnMetLysLeuAsnAlaMetGlyProLeuSerHisTrpI : 87 ||||||! .!.|||:!! ! ||||||!!. !.!.|||||||||! ! !!! : LeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysV 217332 : CTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCG : 217391 88 : leMetGlyThrIleAsnTyrTrpLeuLeuLeuThrArgSerAsnAspIleArgGluCy : 106 !:|||!.! !:!!!!.|||!::! !|||:!!..!!.!!.! |||||||||||||| alMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCy 217392 : TGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTG : 217448 107 : sValArgHisMetGluAsnAspTrpArgLeuValGlnArgAlaAspAspGlnTrpVal : 125 |||||||...!!:|||...||||||||| !|||::! !!! ! ! |||::! !!.! sValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArgGluAla 217449 : CGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCG : 217505 126 : MetLeuArgTyrAlaArgIleGlyArgPheValAlaAlaPheCysAlaValPheMetG : 145 |||:!! ! !!|||!.!.!!|||||| :!!!.! !.!!|||.!! !!|||||| MetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetT 217506 : ATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGT : 217565 146 : lnSerGlyThrLeuLeuPheGlnValValLysAlaMetThrSerMetProValValVa : 164 ! |||||| :::...::: ::!!.!! ! !!!!:!:! ! ! !:!!:!! yrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSe 217566 : ACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATC : 217622 165 : lGlyAsnGluThrValLeuValHisProMetThrCysProIleTyrSerLysPheVal : 183 !! !|||! !!.!:!! ! !! !|||:!!..!! !|||.!! !.! ! .!!:!! rGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyrIleIle 217623 : GGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATC : 217679 184 : AspThrArgPheSerProAlaAsnGluIleMetLeuValValGlnIleLeuSerCysP : 203 |||||||||!:!!!!|||.!!|||||||||:!!!!! !!:!!|||:!::!!:!! ! AspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyA 217680 : GATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAG : 217739 204 : heValValAsnSerIleThrValGlyAlaCysSerLeuAlaAlaValPheAlaMetHi : 222 !:!!:!!:!!.!!|||||| !!.!||||||||||||||||||!.!||||||:!:|| laLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHi 217740 : CTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCA : 217796 223 : sAlaTyrGlyGlnLeuSerMetLeuPheSerTrpLeuAsnGluLeuValAlaAspGlu : 241 ||||! !||||||:!!..!:!!|||.!.!:!||||||.!..!.|||:!!! !! !..! sAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArg 217797 : TGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGA : 217853 242 : AspLysGlyAsnGluPheAlaAspGlnLysLeuAlaValIleValGluHisHisLeuA : 261 ! ! !!:!!!: !!.!||| !:!:!!||| !||||||...!!.|||:!!| AlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnHisValA 217854 : GCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTC : 217913 262 : rgValLeuSerPheIle : 266 ||:!!|||!.!! !:!! rgIleLeuLysCysVal 217914 : GGATATTAAAGTGTGTA : 217930 vulgar: CbirOr23 10 266 . KQ414889.1 217159 217930 + 431 M 40 120 G 0 3 M 216 648 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217160 217930 431 + . gene_id 11 ; sequence CbirOr23 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217160 217930 . + . KQ414889.1 exonerate:protein2genome:local exon 217160 217930 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217160 217930 431 + . alignment_id 11 ; Query CbirOr23 ; Align 217160 11 120 ; Align 217283 51 648 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 428 Query range: 11 -> 273 Target range: 236840 -> 237626 12 : SerAsnAsnAspTyrSerLeuGlnLeuThrArgTrpPheLeuIleProIleAlaAlaT : 31 :!!!:!!:!|||||||||||||||! !!.!|||||| :!!! ! !|||!.!.!!| AlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrT 236841 : GCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACAT : 236898 32 : rpProArgAlaAlaProSerThrValGluLysIleSerLeuGlnAlaHisValLeuAl : 50 |||||!:! !:!! !!!:! !! !..!!!.||||||! ! ! !:!!|||:!! rpProGlnPheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIle-- 236899 : GGCCACAGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATC-- : 236955 51 : aCysTyrLeuLeuIleValValValMetValProCysPheLeuTyrMetSerLeuGlu : 69 |||||| ! !|||:!! !! !!!::!!||||||! |||:!!:!:! !|||||| -CysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGlu 236956 : -TGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAA : 237009 70 : GluAsnAspIleGlnMetLysLeuAsnAlaMetGlyProLeuSerHisTrpIleMetG : 89 :!!... !.!! ! ! !|||:!!!!. !:!:||| !!||||||||||||:!:.!. LysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheC 237010 : AAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCT : 237069 90 : lyThrIleAsnTyrTrpLeuLeuLeuThrArgSerAsnAspIleArgGluCysValAr : 108 !!! !|||!:!||| :!!|||||| !||| !!!!. !||||||.!.! ! !!!. ysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAs 237070 : GTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAA : 237126 109 : gHisMetGluAsnAspTrpArgLeuValGlnArgAlaAspAspGlnTrpValMetLeu : 127 !|||||||||!.!||||||||| !..! ||| ::: ::: ||||||||| nHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeu 237127 : TCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTG : 237183 128 : ArgTyrAlaArgIleGlyArgPheValAlaAlaPheCysAlaValPheMetGlnSerG : 147 !:!||||||!:!.!!.!!|||!:!!.!||| !! !|||.!!:!!|||!!:!!..!!| LysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyG 237184 : AAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTG : 237243 148 : lyThrLeuLeuPheGlnValValLysAlaMetThrSerMetProValValValGlyAs : 166 ||! !||| !!:! |||:!!! !||| |||!!!||| !|||||||||||||| lyIleLeuGlyTyrCysValMetThrAlaSerThrThrMetValValValValGlyAs 237244 : GTATACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAA : 237300 167 : nGluThrValLeuValHisProMetThrCysProIleTyrSerLysPheValAspThr : 185 |:!!|||..!:!!:!!!.! !:!! !!! |||!!:|||!.! !.!!:!! ..! nLysThrThrIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProVal 237301 : CAAGACTACGATCTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTC : 237357 186 : ArgPheSerProAlaAsnGluIleMetLeuValValGlnIleLeuSerCysPheValV : 205 ! !:! !! !|||!!:|||:!::!!:!! !|||.!!|||||| ! |||:!!! AspThrAsnThrMetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleA 237358 : GATACGAATACTATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAG : 237417 206 : alAsnSerIleThrValGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAlaTy : 224 .!|||!:!! !.!!:!!.!!!.! ||||||.!!::!!.!.!..!! ||||||! laAsnAsnSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSe 237418 : CGAACAACAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTC : 237474 225 : rGlyGlnLeuSerMetLeuPheSerTrpLeuAsnGluLeuValAlaAsp<->GluAsp : 242 !||||||||||||:!!:!!.!.! !! !:!!.!.!!:!!!|||::!!!: ..! ! rGlyGlnLeuSerValValMetLeuSerIleGluAspPheValSerGluAlaArgArg 237475 : TGGCCAGTTGAGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGC : 237531 243 : LysGlyAsnGluPheAlaAspGlnLysLeuAlaValIleValGluHisHisLeuArgV : 262 !:!|||!!.!!: ! ! !.!.:!!:!! !!..!|||||||||.!.|||||||||| ArgGlyLysAspAspHisPheAspGluIleProThrIleValGluGluHisLeuArgV 237532 : AGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAG : 237591 263 : alLeuSerPheIleSerArgMetGluSerLeuMet : 273 |||||!.!! :!!!!! !:!!!!:! !:!!:!! alLeuLys***ValCysLeuLeuAspLeuIleLeu 237592 : TGTTGAAGTAAGTATGTTTGTTGGATTTGATTTTG : 237626 vulgar: CbirOr23 11 273 . KQ414889.1 236840 237626 + 428 M 38 114 G 1 0 M 190 570 G 0 3 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236841 237626 428 + . gene_id 12 ; sequence CbirOr23 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236841 237626 . + . KQ414889.1 exonerate:protein2genome:local exon 236841 237626 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 236841 237626 428 + . alignment_id 12 ; Query CbirOr23 ; Align 236841 12 114 ; Align 236955 51 570 ; Align 237528 241 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 412 Query range: 109 -> 387 Target range: 304413 -> 305783 110 : MetGluAsnAspTrpArgLeuValGlnArgAlaAspAspGlnTrpValMetLeuArgT : 129 :!:...!.!! !::..!! !|||:!! ! ! |||!:: :!!||||||!:!| LeuSerThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysT 304414 : CTCTCTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAAT : 304471 130 : yrAlaArgIleGlyArgPheValAlaAlaPheCysAlaValPheMetGlnSerGlyTh : 148 ||!.!!:!!!:|||||| !:!!.!! !.!!||||||:!!|||||| ! !!!||| yrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGl 304472 : ACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGG : 304528 149 : rLeuLeuPheGlnValValLysAlaMetThrSerMetProValValValGlyAsnGlu : 167 ! !:!!!:!!!...!|||! ! !.!..!!!!! !..! !|||! !.!. ! yThrIleTyrHisThrValMetGlnPheAlaThr---GlyThrTyrValAspGluTyr 304529 : CACCATTTATCACACGGTCATGCAGTTCGCGACC---GGAACGTATGTGGATGAGTAT : 304582 168 : ThrValLeuValHisProMetThrCysProIleTyrSerLysPheValAspThrArgP : 187 !.! ! !:!! ! |||:!:..!! !|||! !|||||| !!. !!|||..!!:! AsnArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnT 304583 : AATCGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAA : 304642 188 : heSerProAlaAsnGluIleMetLeuValValGlnIleLeuSerCysPheValValAs : 206 |||||| ! !!|||:!::!:! ! !!|||!!. !:!!!!! ! !:!|||:!! ! hrSerProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTy 304643 : CAAGCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTA : 304699 207 : nSerIleThrValGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAlaTyrGly : 225 !|||||||||!.!|||||||||.!!|||||||||:!!||||||! ||||||! !||| rSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGly 304700 : TTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGA : 304756 226 : GlnLeuSerMetLeuPheSerTrpLeuAsnGluLeuValAlaAspGluAspLysGlyA : 245 |||:!!..!!!::!!.!.||| ! |||..!!!:|||||| !..!:!!!!:..!..!: GlnIleAspIleValMetSerArgLeuGlyAspLeuValAsnSerLysGluSerSerA 304757 : CAAATTGATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCATCTG : 304816 246 : snGluPheAlaAspGlnLysLeuAlaValIleValGluHisHisLeuArgValLeu{S : 264 !! !|||:!!::!||| !! !|||||||||||||||||||||:!!|||{| sp------LeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIleLeu{S 304817 : AT------TTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTA{A : 304867 265 : e} >>>> Target Intron 1 >>>> {r}PheIleSerArgMetGluSerLeu : 272 |} 138 bp {|} !!!:|||! ! ! !||| e}++ +-{r}AspMetSerThr***IleLeuLeu 304868 : G}gt.........................ac{T}GATATGTCTACTTGAATACTACTG : 305029 273 : MetGlnHisIleCysLeuValGluLeuValGlyCysThrLeuAsnMetCysLeuLeuA : 292 .!. ! |||!!!:!! !!!! ! !!! |||! !.!..!.! :::||| TyrAsnGlyAlaCysPheIleThrPheAsp***TrpThr***GluPheLeuValLeu- 305030 : TATAACGGTGCGTGTTTTATAACTTTTGACTAATGGACTTAGGAGTTCTTGgtttta- : 305089 293 : laTyrTyrThrIleThrAsnTrpSerAsnPheAspAlaGlyArgMetThrSerTyrPh : 311 ||| !:!!|||..!!:! !:!!.!!! !!!!:!:|||!!!||| -----TyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrThrTyrTh 305090 : -----tatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATAC : 305140 312 : ePheValTyrValSerMetAlaPheAsnIlePheIlePheCysTyrIleGlyGluIle : 330 ! :!! :!!|||:!:.!!|||||||||||||||!!.|||||||||||||||||| rValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIle 305141 : AGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATT : 305197 331 : LeuThrGluGln >>>> Target Intron 2 >>>> CysLysThrValGlyGl : 340 |||! !|||:!! 413 bp !!!..!:!|||||| LeuMetGluLys++ ++SerSerSerValGlyLe 305198 : CTTATGGAAAAGgt.........................agAGCAGTAGCGTTGGATT : 305640 341 : uLysAlaTyrMetThrAspTrpTyrLysLeuProHisLysThrAlaArgGlyLeuLeu : 359 !.....!!:!|||! !..!|||||| ! |||||| !|||||| !!.!||||||:!! uSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIle 305641 : ATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATT : 305697 360 : LeuIleIleAlaArgSerSerAsnValIleLysIleThrAlaGlyLysLeuPheGlnL : 379 ||||||||||||! !||||||||| ! !||||||!:!|||||||||:!! !!.!.| LeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysValValAspL 305698 : TTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATT : 305757 380 : euSerIleAlaThrPheGlyAspVal : 387 |||||:!!:!!|||||||||:!!||| euSerLeuSerThrPheGlyAsnVal 305758 : TATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: CbirOr23 109 387 . KQ414889.1 304413 305783 + 412 M 50 150 G 1 0 M 85 255 G 2 0 M 16 48 S 0 2 5 0 2 I 0 134 3 0 2 S 1 1 M 27 81 G 2 0 M 41 123 5 0 2 I 0 409 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304414 305783 412 + . gene_id 13 ; sequence CbirOr23 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 304414 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304414 304868 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 305006 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305005 305006 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 305007 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305007 305211 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304414 305783 412 + . alignment_id 13 ; Query CbirOr23 ; Align 304414 110 150 ; Align 304564 161 255 ; Align 304819 248 48 ; Align 305008 265 81 ; Align 305089 294 123 ; Align 305625 335 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 410 Query range: 14 -> 266 Target range: 212869 -> 213628 15 : AspTyrSerLeuGlnLeuThrArgTrpPheLeuIleProIleAlaAlaTrpPro<->A : 33 ::: |||::: !! !!.!||||||.!!|||! !|||! !.! !|||||| ! AsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspL 212870 : aatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACA : 212927 34 : rgAlaAlaProSerThrValGluLysIleSerLeuGlnAlaHisValLeuAlaCysTy : 52 :!:!! ! !||| !!:!!||||||! !! ! !!:! ! ! ! !!.!||||| ysSerTyrValSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTy 212928 : AGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTA : 212984 53 : rLeuLeuIleValValValMetValProCysPheLeuTyrMetSerLeuGluGluAsn : 71 | !||||||! ! !:!!:!::!!|||||| !||||||:!!! !|||!!:! !... rGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGlu 212985 : CGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgag : 213041 72 : AspIleGlnMetLysLeuAsnAlaMetGlyProLeuSerHisTrpIleMetGlyThrI : 91 :::||| ::::!!.!. !.!.||| !!!!:!! !!! :!: !.! ! AsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuT 213042 : aatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGT : 213101 92 : leAsnTyrTrpLeuLeuLeuThrArgSerAsnAspIleArgGluCysValArgHisMe : 110 !!.||| ! !|||:!! !!.!.!!:!!||||||||| !||||||..!||||| rpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMe 213102 : GGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATAT : 213158 111 : tGluAsnAspTrpArgLeuValGlnArgAlaAspAspGlnTrpValMetLeuArgTyr : 129 |:!! !!||||||!:! !:!! !!.!! !!!:|||:!! :!!||| ! ! !! tLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsn 213159 : GAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAAC : 213215 130 : AlaArgIleGlyArgPheValAlaAlaPheCysAlaValPheMetGlnSerGlyThrL : 149 |||!!!.!!|||!:! :!!!.!.!!.!!|||||| !!|||||| ! !!!||| ! AlaSerPheGlyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheT 213216 : GCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCA : 213275 150 : euLeuPheGlnValValLysAlaMetThrSerMetProValValValGlyAsnGluTh : 168 !!!!!:! :!!||| ! !!!!:!:!:!! !:!!|||!.!! !:!! !. hrPheTyrPheLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAs 213276 : CGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAA : 213332 169 : rValLeuValHisProMetThrCysProIleTyrSerLysPheValAspThrArgPhe : 187 !||| ! !!...! !|||..! !|||:!!! !!! .!!||||||..!|||!:! nValThrPheArgGlnMetValValProValSerArgPheIleValAspValArgTyr 213333 : CGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATAC : 213389 188 : SerProAlaAsnGluIleMetLeuValValGlnIleLeuSerCysPheValValAsnS : 207 ||||||!.!|||||||||.!.!!!:!!:!!||||||:!!:!! ! ! :!!:!!:!!: SerProValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisA 213390 : AGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATG : 213449 208 : erIleThrValGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAlaTyrGlyGl : 226 !!|||.!!|||! !|||||||||||||||||||||||||||:!:||||||! !||||| laIleAlaValValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGl 213450 : CTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACA : 213506 227 : nLeuSerMetLeuPheSerTrpLeuAsnGluLeuValAlaAspGluAspLysGlyAsn : 245 |:!!.!!!!:|||.!.|||||||||.!..!.|||:!!! !! !..!!!: ! !!:! nMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGlyArgGluAspMetSer 213507 : GATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGC : 213563 246 : GluPheAlaAspGlnLysLeuAlaValIleValGluHisHisLeuArgValLeuSerP : 265 :!! !!.!|||.!.!:!:!!||||||||||||.!.!!.|||:!!|||:!!|||!.!! LysAsnValAspAspArgIleAlaValIleValAsnGlnHisValArgIleLeuLysT 213564 : AAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTGAAGT : 213623 266 : heIle : 266 :::!: rpVal 213624 : GGGTG : 213628 vulgar: CbirOr23 14 266 . KQ414889.1 212869 213628 + 410 M 18 54 G 0 3 M 234 702 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212870 213628 410 + . gene_id 14 ; sequence CbirOr23 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212870 213628 . + . KQ414889.1 exonerate:protein2genome:local exon 212870 213628 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212870 213628 410 + . alignment_id 14 ; Query CbirOr23 ; Align 212870 15 54 ; Align 212927 33 702 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 364 Query range: 6 -> 267 Target range: 226903 -> 227689 7 : SerAsnSerCysArgSerAsnAsnAspTyrSerLeuGlnLeuThrArgTrpPheLeuI : 26 ..!|||..!! !!:!..! !! :!! |||:!!||||||!.!||||||.!.|||! GluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuL 226904 : GAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGA : 226961 27 : leProIleAlaAlaTrpProArgAlaAlaProSerThr<->ValGluLysIleSerLe : 44 !|||:!!!.! !|||||| !:!! ! !|||:!! :!!! !!:! !! !! ysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSe 226962 : AACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTC : 227018 45 : uGlnAlaHisValLeuAlaCysTyrLeuLeuIleValValValMetValProCysPhe : 63 ! ! ! ! !!!! !|||||| !|||!!: ! !!! !:!!||| !! !! ! rTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGly 227019 : CTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGC : 227075 64 : LeuTyrMetSerLeuGluGluAsnAspIleGlnMetLysLeuAsnAlaMetGlyProL : 83 ||||||:!! !||||||! !!!.! ! ! ! ! ! !|||!!. !!!:||||||: LeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProM 227076 : TTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGA : 227135 84 : euSerHisTrpIleMetGlyThrIleAsnTyrTrpLeuLeuLeuThrArgSerAsnAs : 102 !!||| !!:: |||..! !:!!!!.|||! :!!||| ! !!.!..!:!!|| etSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAs 227136 : TGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGA : 227192 103 : pIleArgGluCysValArgHisMetGluAsnAspTrpArgLeuValGlnArgAlaAsp : 121 ||||! !|||||||||..!!..!!::!! ||||||!:! !:!!::! ! !!!: pIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGlu 227193 : CATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAG : 227249 122 : AspGlnTrpValMetLeuArgTyrAlaArgIleGlyArgPheValAlaAlaPheCysA : 141 |||::! ||||||:!!! !|||||| ! !|||||| :!! !.!!.!!|||. AspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysT 227250 : GACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCA : 227309 142 : laValPheMetGlnSerGlyThrLeuLeuPheGlnValValLysAlaMetThrSerMe : 160 !! !!|||:!: |||... :::...||| :!!||| ! !!!!:!.!:!! hrPhePheValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGl 227310 : CGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGG : 227366 161 : tProValValValGlyAsnGluThrValLeuValHisProMetThrCysProIleTyr : 179 !|||!.!..!! !:!!! !!.! ! ! ! !! !||| !!! !|||.!! ySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPhePro 227367 : AAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCA : 227423 180 : SerLysPheValAspThrArgPheSerProAlaAsnGluIleMetLeuValValGlnI : 199 !.!! .!!!.!|||..!|||!:!|||||| !|||||||||.!.!!! !||||||. LysIleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnP 227424 : AAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAAT : 227483 200 : leLeuSerCysPheValValAsnSerIleThrValGlyAlaCysSerLeuAlaAlaVa : 218 !!:!!!!! !!.!!|||:!!:!!.!!:!!||| !!.!|||||||||:!!||||||:! heValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLe 227484 : TTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCT : 227540 219 : lPheAlaMetHisAlaTyrGlyGlnLeuSerMetLeuPheSerTrpLeuAsnGluLeu : 237 !.!!|||:!:||||||! !||||||:!!..!:!!||| ! |||||||||....!.||| uLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeu 227541 : GCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTG : 227597 238 : ValAlaAspGluAspLysGlyAsnGluPheAlaAspGlnLysLeuAlaValIleValG : 257 :!!! !! !..!! ! !!:!:!! !|||.!.!:!:!!||| !|||||| IleAspGlyArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValT 227598 : ATCGACGGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCA : 227657 258 : luHisHisLeuArgValLeuSerPheIleSer : 267 ||||||:!!|||:!!|||!.!! !:!!!!! hrHisHisValArgIleLeuLysCysValThr 227658 : CTCACCACGTTCGAATATTGAAGTGTGTAACG : 227689 vulgar: CbirOr23 6 267 . KQ414889.1 226903 227689 + 364 M 32 96 G 0 3 M 229 687 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226904 227689 364 + . gene_id 15 ; sequence CbirOr23 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226904 227689 . + . KQ414889.1 exonerate:protein2genome:local exon 226904 227689 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226904 227689 364 + . alignment_id 15 ; Query CbirOr23 ; Align 226904 7 96 ; Align 227003 39 687 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 357 Query range: 165 -> 403 Target range: 300183 -> 302166 166 : AsnGluThrValLeuValHisProMetThrCysProIleTyrSerLysPheValAspT : 185 !..|||!.! ! ! ! ! |||:!:.!!! !||| !|||..! !|||:!!|||| ArgGluAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspT 300184 : AGGGAGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATA : 300241 186 : hrArgPheSerProAlaAsnGluIleMetLeuValValGlnIleLeuSerCysPheVa : 204 ||!:! !||||||.!! !!||||||:::... ... .!!:!!....!.:! hrGlnThrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIl 300242 : CACAAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGAT : 300298 205 : lValAsnSerIleThrValGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAla : 223 !:!! !!!:!:!:|||..!!.!|||! !||||||||||||:!!|||!.!! ||| ! eMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIle 300299 : CATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATC : 300355 224 : TyrGlyGlnLeuSerMetLeuPheSerTrpLeuAsnGluLeuValAlaAspGluAspL : 243 ! !||||||:!!..!!!:! !.!.:!! ! |||.!.!!:||||||! ! !! : CysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrGlyG 300356 : TGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGGGAG : 300415 244 : ysGlyAsnGluPheAlaAspGlnLysLeuAlaValIleValGluHisHisLeuArgVa : 262 !! !:!!!!: ! !!||| |||!.!|||||||||..! !!|||:!!!:!|| luLysAspAspGlyProAsp---ProLeuValValIleValArgAspHisValLysVa 300416 : AGAAGGACGACGGTCCTGAT---CCTTTGGTCGTTATCGTTCGAGATCACGTGAAGGT : 300469 263 : lLeu{Se} >>>> Target Intron 1 >>>> {r}PheIleSerArgMetGlu : 270 ||||{!!} 1110 bp {!} ! !!! !.!.... lLeu{Ar}++ ++{g}AspProCysSerPheArg 300470 : TTTA{AG}gt.........................ag{A}GACCCGTGTTCCTTCCGT : 301603 271 : SerLeuMetGlnHisIleCysLeuValGluLeuValGlyCysThrLeuAsnMetCysL : 290 ! !! !! |||:!!||| ||| ||||||||| ! ***ProThrPheHisLeuCysAlaValIleLysPheGluSerThrLeuAsnAlaLysP 301604 : TAGCCAACTTTTCATCTCTGCgctgtaattaaatttgaatctACTTTAAATGCAAAGT : 301663 291 : euLeuAlaTyrTyrThrIleThrAsnTrpSerAsnPheAspAlaGlyArgMetThrSe : 309 !!||| ! ! !.!! !.!.|||..!||| !|||.!! ! !||| !!! heLeuArgValIle***Phe***GluTrpGlnAsnSerAspThrIleAlaMetLeuTh 301664 : TTTTACGAGTAATTTGATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTTGAC : 301720 310 : rTyrPhePheValTyrValSerMetAlaPheAsnIlePheIlePheCysTyrIleGly : 328 !!:!||| !:!!! ..!|||.!..!!|||||||||||||||||||||||||||||| rPhePheThrLeuLeuThrSerPheThrPheAsnIlePheIlePheCysTyrIleGly 301721 : ATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGC : 301777 329 : GluIleLeuThrGluGln >>>> Target Intron 2 >>>> CysLysThrVa : 338 |||||||||:!!|||||| 80 bp |||!.. !:! GluIleLeuSerGluGln++ ++CysSerGlnIl 301778 : GAGATTCTTTCCGAACAGgt.........................agTGTAGCCAAAT : 301887 339 : lGlyGluLysAlaTyrMetThrAspTrpTyrLysLeuProHisLysThrAlaArgGly : 357 !|||..! !:!!||| !! !|||||||||!!.|||||| |||! !||| !! ! eGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAsp 301888 : TGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGAT : 301944 358 : LeuLeuLeuIleIleAlaArgSerSerAsnValIleLysIleThrAlaGlyLysLeuP : 377 |||:!!|||:!!! !!.!! !|||..! !! ! |||:!!||||||||||||:!!. LeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGlyLysIleI 301945 : CTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAA : 302004 378 : heGlnLeuSerIleAlaThrPheGlyAsp >>>> Target Intron 3 >>>> : 387 !!.!.||||||:!: !||||||.!!..! 82 bp leAspLeuSerLeuAsnThrPheSerSer++ ++ 302005 : TCGACTTATCCTTGAATACATTCAGCTCTgt.........................ag : 302114 388 : ValIleLysThrSerValIleTyrLeuAsnLeuIleArgThrMetThrSer : 403 |||:!:||||||||||||:!:||||||||||||:!:||||||:!:|||!:! ValValLysThrSerValValTyrLeuAsnLeuLeuArgThrValThrAsn 302115 : GTGGTGAAAACATCGGTGGTGTACTTGAATTTACTGCGAACAGTTACAAAC : 302166 vulgar: CbirOr23 165 403 . KQ414889.1 300183 302166 + 357 M 84 252 G 1 0 M 13 39 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 70 210 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300184 302166 357 + . gene_id 16 ; sequence CbirOr23 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300184 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300184 300476 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302166 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302166 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300184 302166 357 + . alignment_id 16 ; Query CbirOr23 ; Align 300184 166 252 ; Align 300436 251 39 ; Align 301588 265 210 ; Align 301878 335 156 ; Align 302116 387 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 330 Query range: 264 -> 402 Target range: 224140 -> 224770 265 : PheIleSerArgMetGluSerLeuMetGlnHisIleCysLeuValGluLeuValGlyC : 284 |||:!!!!!!.!! |||!.! !:!!|||!!.:!!! !!!||||||!!!:!!|||| PheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValGluPheLeuGlyC 224141 : TTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGGAATTTCTAGGCT : 224198 285 : ysThrLeuAsnMetCysLeuLeuAlaTyrTyrThrIleThr >>>> Target Int : 298 ||! !||||||!!:|||||||||!.!||||||..!|||..! 84 bp ysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleVal++ 224199 : GCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTGgt............... : 224242 299 : ron 1 >>>> AsnTrpSerAsnPheAspAlaGlyArgMetThrSerTyrPhePheV : 313 ...||||||::: !! ! !!!! !..!!!!||||||.!.: ++GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleL 224243 : ..........aggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATAC : 224369 314 : alTyrValSerMetAlaPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuTh : 332 !! !:!!|||:::...|||||||||||||||||||||||||||||||||:!::!!.! euLeuMetSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAl 224370 : TACTCATGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGC : 224426 333 : rGluGln >>>> Target Intron 2 >>>> CysLysThrValGlyGluLysA : 342 !|||||| 65 bp |||::: :::|||::! !: aGluGln++ ++CysGluLysIleGlyGlnValS 224427 : TGAAcaggt.........................agtgtgaaaaaattggacaAGTGT : 224521 343 : laTyrMetThrAspTrpTyrLysLeuProHisLysThrAlaArgGlyLeuLeuLeuIl : 361 !!||||||! !|||||||||::!||| !! !!.! ! !! ! !!! !:!!||||| erTyrMetIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIl 224522 : CGTACATGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGAT : 224578 362 : eIleAlaArgSerSerAsnValIleLysIleThrAlaGlyLysLeuPheGlnLeuSer : 380 |||||||! !|||!:!::! !||||||:!:|||||||||!!.:!! !!:!!|||!!! eIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCys 224579 : AATCGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGT : 224635 381 : IleAlaThrPheGlyAsp >>>> Target Intron 3 >>>> ValIleLysTh : 390 :!!.!!|||||||||||| 67 bp |||:!!||||| LeuThrThrPheGlyAsp++ ++ValValLysTh 224636 : CTAACCACTTTCGGTGACgt.........................agGTTGTCAAGAC : 224732 391 : rSerValIleTyrLeuAsnLeuIleArgThrMetThr : 402 |:!!||| !!:!||||||:!!:!!||||||:!!||| rAlaValAlaPheLeuAsnValLeuArgThrLeuThr 224733 : AGCTGTCGCATTTTTGAACGTGTTACGAACATTGact : 224770 vulgar: CbirOr23 264 402 . KQ414889.1 224140 224770 + 330 M 33 99 5 0 2 I 0 80 3 0 2 M 37 111 5 0 2 I 0 61 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224141 224770 330 + . gene_id 17 ; sequence CbirOr23 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224141 224239 . + . KQ414889.1 exonerate:protein2genome:local exon 224141 224239 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224240 224241 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224240 224323 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224322 224323 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224655 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224655 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224656 224657 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224656 224722 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 224721 224722 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 224723 224770 . + . KQ414889.1 exonerate:protein2genome:local exon 224723 224770 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224141 224770 330 + . alignment_id 17 ; Query CbirOr23 ; Align 224141 265 99 ; Align 224324 298 111 ; Align 224500 335 156 ; Align 224723 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 317 Query range: 297 -> 402 Target range: 277371 -> 277842 298 : AsnTrpSerAsnPheAspAlaGlyArgMetThrSerTyrPhePheValTyrValSerM : 317 .!.||||||:!! !|||!.! !! !||||||!!!:!!|||.!.:!! !:!!|||| GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 318 : etAlaPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGln >>> : 335 ||...|||||||||||| ! ! |||||||||||||||||||||||||||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 336 : > Target Intron 1 >>>> CysLysThrValGlyGluLysAlaTyrMetThrA : 346 72 bp ||||||! !||||||||| !!.!|||||||||: ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 347 : spTrpTyrLysLeuProHisLysThrAlaArgGlyLeuLeuLeuIleIleAlaArgSe : 365 !!|||||| ! |||||| !!||| ! !! !..!|||||||||||||||:!!||||| snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 366 : rSerAsnValIleLysIleThrAlaGlyLysLeuPheGlnLeuSerIleAlaThrPhe : 384 |||| |||||||||||||||||||||||||||...|||:::|||:!: !|||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 385 : GlyAsp >>>> Target Intron 2 >>>> ValIleLysThrSerValIleTy : 394 |||||| 84 bp ||||||||||||!!! !! || GlyAsp++ ++ValIleLysThrThrPheAlaTy 277703 : GGCGATgt.........................agGTAATAAAAACCACTTTCgcgta : 277816 395 : rLeuAsnLeuIleArgThrMetThr : 402 |||||||::::::||| !! !||| rLeuAsnIleLeuArgGlnThrThr 277817 : tttaaatattctacgCCAAACGACG : 277842 vulgar: CbirOr23 297 402 . KQ414889.1 277371 277842 + 317 M 37 111 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277842 317 + . gene_id 18 ; sequence CbirOr23 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277842 317 + . alignment_id 18 ; Query CbirOr23 ; Align 277372 298 111 ; Align 277555 335 156 ; Align 277795 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 292 Query range: 15 -> 263 Target range: 289735 -> 290479 16 : TyrSerLeuGlnLeuThrArgTrpPheLeuIleProIleAlaAlaTrpPro<-><->A : 33 |||!!!!!!:!!||| !!.!|||.!!|||! !||||||!.! !!::||| TyrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrProPheValP 289736 : TACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCT : 289793 34 : rgAlaAlaProSerThrValGluLysIleSerLeuGlnAlaHisValLeuAlaCysTy : 52 !::! ! !!|||! ! !|||::!! :!!! ! ! !! :!!|||!.!|||! heSerArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLeuValCysCy 289794 : TTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTG : 289850 53 : rLeuLeuIleValValValMetValProCysPheLeuTyrMetSerLeuGluGluAsn : 71 !! !:!!:!! ! !!:!!!!:||||||! ! !! !:!!:!: !!!!...!!:||| sSerIleLeuGlnPheIleIleValProPheSerHisHisValLeuPheSerAspAsn 289851 : CTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAAC : 289907 72 : AspIleGlnMetLysLeuAsnAlaMetGlyProLeuSerHisTrpIleMetGlyThrI : 91 |||!!:.!.! ! :!!!!. !:!:|||||||||!!! !!! :!:! ! !. AspMetAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuThrThrPheP 289908 : GACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCT : 289967 92 : leAsnTyrTrpLeuLeuLeuThrArgSerAsnAspIleArgGluCysValArgHisMe : 110 !!!!.|||!! ! !!!! !! !!:!.!!:::! ||| !!...||||||!:!|||!! heLysTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysValLysHisIl 289968 : TCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACAT : 290024 111 : tGluAsnAspTrpArgLeuValGlnArgAlaAspAspGlnTrpValMetLeuArgTyr : 129 :|||!..||||||!:!:!!:!!!:: !! !||| !!!:: :!!|||||||||||| eGluArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMetLeuArgTyr 290025 : CGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATAC : 290081 130 : AlaArgIleGlyArgPheValAlaAlaPheCysAlaValPheMetGlnSerGlyThrL : 149 !.!! !!!:.!!||| !:!! ! !.!.||||||:!!|||:!! ! ! !||| !| ValThrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyL 290082 : GTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTC : 290141 150 : euLeuPheGlnValValLysAlaMetThrSerMetProValValValGlyAsnGluTh : 168 ||! !!:!.!...!|||! ! !!:!! !|||! ! ! !||| !|||||| euSerTyrAsnThrValIleProLeuPheSerLysLysSerValAsnGlyAsn----- 290142 : TGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGGTAAC----- : 290195 169 : rValLeuValHisProMetThrCysProIleTyrSerLysPheValAspThrArgPhe : 187 ||| !:!!...|||:!:|||! !||| !|||..!:!!||| !!|||..!!:! -ValThrIleArgProLeuThrTyrProGlyTyrGluGluPhePheAspValGlnLys 290196 : -GTGACTATCAGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAG : 290249 188 : SerProAlaAsnGluIleMetLeuValValGlnIleLeuSerCysPheValValAsnS : 207 ||||||||| !!||||||:!:!!! !:!!!!. !:!!! ! !.!.:!!..! ! SerProAlaTyrGluIleValPheCysMetHisCysValTyrValMetIleThrAlaA 290250 : AGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGA : 290309 208 : erIleThrValGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAlaTyrGlyGl : 226 :!||||||:!!!.!|||! !||||||.!!.!!:!!||||||! |||.!!! !||||| snIleThrMetAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGl 290310 : ACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCA : 290366 227 : nLeuSerMetLeuPheSerTrpLeuAsnGluLeuValAlaAspGluAspLysGlyAsn : 245 |:!!!.!!!:! ! !!! !!|||.!.!!:|||..! ! ! ! ! !.!. nIleLysIleGlnThrThrArgLeuGluAspLeuThrLysArgGlyMetLeuLeuGlu 290367 : GATTAAGATACAAACGACGCGGCTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAG : 290423 246 : GluPheAlaAspGlnLysLeuAlaValIleValGluHisHisLeuArgValLeu : 263 :!! !.!..!.!.:::|||||||||:!!|||... !|||:!!..!:!!||| LysGlyValSerAspArgLeuAlaValValValSerGlyHisValGluIleLeu 290424 : AAGGGAGTGAGTGATCGTTTGGCGGTTGTTGTGAGCGGTCACGTGGAGATCTTG : 290479 vulgar: CbirOr23 15 263 . KQ414889.1 289735 290479 + 292 M 17 51 G 0 6 M 134 402 G 2 0 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289736 290479 292 + . gene_id 19 ; sequence CbirOr23 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289736 290479 . + . KQ414889.1 exonerate:protein2genome:local exon 289736 290479 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289736 290479 292 + . alignment_id 19 ; Query CbirOr23 ; Align 289736 16 51 ; Align 289793 33 402 ; Align 290195 169 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 277 Query range: 297 -> 402 Target range: 272836 -> 273302 298 : AsnTrpSerAsnPheAspAlaGlyArgMetThrSerTyrPhePheValTyrValSerM : 317 .!.|||!!!:!! !||| ! !!!!:!:|||!!!||||||.!.:!! !:!!|||| GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 318 : etAlaPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGln >>> : 335 ||...||||||||||||||| |||||||||||||||||||||||||||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 336 : > Target Intron 1 >>>> CysLysThrValGlyGluLysAlaTyrMetThrA : 346 70 bp |||||| :::|||||| !!.!|||||||||: ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 347 : spTrpTyrLysLeuProHisLysThrAlaArgGlyLeuLeuLeuIleIleAlaArgSe : 365 !!|||||| ! |||||| !||| ! !! !! !|||:!!|||||||||:!!|||!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 366 : rSerAsnValIleLysIleThrAlaGlyLysLeuPheGlnLeuSerIleAlaThrPhe : 384 !||| !|||||||||||||||||||||!:!:!! !!! :!!|||:!: !|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 385 : GlyAsp >>>> Target Intron 2 >>>> ValIleLysThrSerValIleTy : 394 |||||| 81 bp |||!!:|||!:!:!! !! || GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 395 : rLeuAsnLeuIleArgThrMetThr : 402 |||||||:!!:!!||| !! !||| rLeuAsnMetLeuArgGlnThrThr 273277 : CTTAAATATGCTACGACAAACGACA : 273302 vulgar: CbirOr23 297 402 . KQ414889.1 272836 273302 + 277 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273302 277 + . gene_id 20 ; sequence CbirOr23 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273302 277 + . alignment_id 20 ; Query CbirOr23 ; Align 272837 298 111 ; Align 273018 335 156 ; Align 273255 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 246 Query range: 297 -> 404 Target range: 219328 -> 219809 298 : AsnTrpSerAsnPheAspAlaGlyArgMetThrSerTyrPhePheValTyrValSerM : 317 .!.|||!.!::: !|||!.! !!!! ..!!!!|||.!!.!!:!! !:!!|||: GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 318 : etAlaPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGln >>> : 335 !:...||||||||||||||||||||||||||||||||||||:!!.!!|||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln++ 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAggt... : 219442 336 : > Target Intron 1 >>>> CysLysThrValGlyGluLysAlaTyrMetThrA : 346 73 bp |||::: :::|||||| :!!||||||! !! ++CysArgLysIleGlyGluMetSerTyrMetIleG 219443 : ......................agTGtaggaaaattggagaaatgtCGTACATGATCG : 219546 347 : spTrpTyrLysLeuProHisLysThrAlaArgGlyLeuLeuLeuIleIleAlaArgSe : 365 !:||||||::!||| !! |||! ! !! ! !! !:!!|||! !||||||! !|| luTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaMetSe 219547 : AATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTATGTC : 219603 366 : rSerAsnValIleLysIleThrAlaGlyLysLeuPheGlnLeuSerIleAlaThrPhe : 384 |!:!::! !||||||:!:|||||||||!!.:!! !!:!!|||||||||::!|||||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPhe 219604 : GAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCACTTTT : 219660 385 : GlyAsp >>>> Target Intron 2 >>>> ValIleLysThrSerValIleTy : 394 !||| 87 bp |||:!!||||||:!!|||! !: ThrAsp++ ++ValValLysThrAlaValThrPh 219661 : ACCGACgt.........................agGTCGTTAAGACTGCAGTCACGTT : 219777 395 : rLeuAsnLeuIleArgThrMetThrSerThr : 404 !||||||:!!:!!||||||:!!|||!!!||| eLeuAsnValLeuArgThrLeuThr***Thr 219778 : TCTGAATGTACTACGAACATTGACTTGAACG : 219809 vulgar: CbirOr23 297 404 . KQ414889.1 219328 219809 + 246 M 37 111 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 83 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219809 246 + . gene_id 21 ; sequence CbirOr23 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219668 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219668 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219669 219670 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219669 219755 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219754 219755 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219756 219809 . + . KQ414889.1 exonerate:protein2genome:local exon 219756 219809 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219809 246 + . alignment_id 21 ; Query CbirOr23 ; Align 219329 298 111 ; Align 219513 335 156 ; Align 219756 387 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 195 Query range: 10 -> 225 Target range: 194156 -> 194795 11 : ArgSerAsnAsnAspTyrSerLeuGlnLeuThrArgTrpPheLeuIleProIleAlaA : 30 !:!! !:!!!.!!!:|||:!!:!!!:!:!!.!!!:! !.!!|||! !||||||!.! LysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyI 194157 : AAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTA : 194214 31 : laTrpProArgAlaAlaProSerThrValGluLysIleSerLeuGlnAlaHisValLe : 49 !||||||||| ! ! !||| ! !!!:!:!:!! !!||| |||!!...! leTrpProArg---GluAspSerLeuArgAspArgValArgLeuPheAlaGlnThrGl 194215 : TCTGGCCAAGG---GAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGG : 194268 50 : uAlaCysTyrLeuLeuIleValValValMetValProCysPheLeuTyrMetSerLeu : 68 !!.! !!:! !|||!!: ! !!:!!:!!|||||| ! ! :!!|||! ! !!!! yValValPheAlaLeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPhe 194269 : CGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTC : 194325 69 : GluGluAsnAspIleGlnMetLysLeuAsnAlaMetGlyProLeuSerHisTrpIleM : 88 !!: .!.|||:!: !! ! ! :!!!!.!.!!!:!.! !!! ! ! ! ! :!:: AspCysGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuL 194326 : GACTGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGT : 194385 89 : etGlyThrIleAsnTyrTrpLeuLeuLeuThrArgSerAsnAspIleArgGluCysVa : 107 !!!.!! !|||!!.!:!||| !:!!:!!..!!.!!!!!!.!!:|||||| |||:! euAlaIleIleLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLe 194386 : TGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCT : 194442 108 : lArgHisMetGluAsnAspTrpArgLeuValGlnArgAlaAspAspGlnTrpValMet : 126 !! !.!.||||||!...!.!::||| !|||:!! !!! !!!:|||!:! !|||||| uLeuGluMetGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMet 194443 : GCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATG : 194499 127 : LeuArgTyrAlaArgIleGlyArgPheValAlaAlaPheCysAlaValPheMetGlnS : 146 !!.!! !|||!:!|||||||||||| !!.!!.!!.!.! ! !! !.!! ! . ThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrG 194500 : ACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACG : 194559 147 : erGlyThrLeuLeuPheGlnValValLysAlaMetThrSerMetProValValValGl : 165 !!|||.!!|||! !!:!!!.:!!:!! ! !!:!!! !||| ! !:!!||| !! lyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGl 194560 : GTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGA : 194616 166 : yAsnGluThrValLeuValHisProMetThrCysProIleTyrSerLysPheValAsp : 184 !:!!.!.!:!..!! !:!! |||:!! !!! ! !! ! !!! ! ||| !!! uAspAsnSerThrGlnIle---ProLeuProTyrLeuSerAsnTyrValPhePheAla 194617 : GGATAACAGTACTCAGATA---CCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCG : 194670 185 : ThrArgPheSerProAlaAsnGluIleMetLeuValValGlnIleLeuSerCysPheV : 204 ! !..! !|||||| ! !!||||||! !!!||| !|||||||||! ! !! !: IleGluAspSerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerI 194671 : ATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCA : 194730 205 : alValAsnSerIleThrValGlyAlaCysSerLeuAlaAlaValPheAlaMetHisAl : 223 !!:!! |||! !.! !||| !! !||||||!.!|||..!.!! !||||||.. leIleLeuSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCy 194731 : TCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTG : 194787 224 : aTyrGly : 225 !! !||| sCysGly 194788 : CTGTGGC : 194795 vulgar: CbirOr23 10 225 . KQ414889.1 194156 194795 + 195 M 23 69 G 1 0 M 137 411 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194157 194795 195 + . gene_id 22 ; sequence CbirOr23 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194157 194795 . + . KQ414889.1 exonerate:protein2genome:local exon 194157 194795 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 194157 194795 195 + . alignment_id 22 ; Query CbirOr23 ; Align 194157 11 69 ; Align 194226 35 411 ; Align 194637 173 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 185 Query range: 333 -> 399 Target range: 264723 -> 265001 334 : GlnCysLysThrValGlyGluLysAlaTyrMetThrAspTrpTyrLysLeuProHisL : 353 |||||||||! !||||||||| !!.!||||||:!!:!!|||||| ! ||||||:!!| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 354 : ysThrAlaArgGlyLeuLeuLeuIleIleAlaArgSerSerAsnValIleLysIleTh : 372 || ! !! !! !|||:!!||||||||| !||||||||| |||.!!|||.!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 373 : rAlaGlyLysLeuPheGlnLeuSerIleAlaThrPheGlyAsp >>>> Target I : 387 ||||||||||:!!.!!!!.:!!|||!!: !||||||.!!||| 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 388 : ntron 1 >>>> ValIleLysThrSerValIleTyrLeuAsnLeuIleArg : 399 bp |||||||||:!!||| !!! ||||||||||||:!!||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArg 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGC : 265001 vulgar: CbirOr23 333 399 . KQ414889.1 264723 265001 + 185 M 53 159 5 0 2 I 0 76 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265001 185 + . gene_id 23 ; sequence CbirOr23 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265001 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265001 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265001 185 + . alignment_id 23 ; Query CbirOr23 ; Align 264724 334 159 ; Align 264963 387 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 333 -> 393 Target range: 254271 -> 254451 334 : GlnCysLysThrValGlyGluLysAlaTyrMetThrAspTrpTyrLysLeuProHisL : 353 |||||| !! !||||||||| !!.!|||||||||||||||||| ! ||||||!!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 354 : ysThrAlaArgGlyLeuLeuLeuIleIleAlaArgSerSerAsnValIleLysIleTh : 372 :!! ! !! !! !|||:!!|||||||||.!!||||||!:! |||:!!:!!||||| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 373 : rAlaGlyLysLeuPheGlnLeuSerIleAlaThrPheGlyAspValIleLysThrSer : 391 ||||||||||:::|||...:::|||:!! !|||||||||||||||! !:!!|||!:! rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 254443 392 : ValIle : 393 :!!:!! LeuVal 254444 : CTTGTT : 254451 vulgar: CbirOr23 333 393 . KQ414889.1 254271 254451 + 178 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254451 178 + . gene_id 24 ; sequence CbirOr23 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254451 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254451 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254451 178 + . alignment_id 24 ; Query CbirOr23 ; Align 254272 334 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 173 Query range: 3 -> 210 Target range: 294651 -> 295275 4 : ArgAsnLysSerAsnSerCysArgSerAsnAsnAspTyrSerLeuGlnLeuThrArgT : 23 |||!.!! !..!:!!!!! !|||!:!:!! ! !!||||||:!!! ! !||| ArgThrMetAspAspThrAsnArgAsnAspValAlaAsnSerLeuLysTyrCysArgA 294652 : AGAACCATGGACGATACTAACAGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAA : 294709 24 : rpPheLeuIleProIleAlaAlaTrpPro<-><->ArgAlaAlaProSerThrValGl : 40 !!.!.|||! !||||||!.! !|||||| !::! ! !!|||! !:!!.! rgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrSerHisThrSerLysLeuAs 294710 : GGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACAGTCACACCAGCAAACTGAA : 294766 41 : uLysIleSerLeuGlnAlaHisValLeuAlaCysTyrLeuLeuIleValValValMet : 59 .|||:!! !! ! ! !! :!! ! !||| ||| !:!!:!! !!|||:!: nLysValLeuSerIleIleLeuIleAlaTrpCysThrLeuThrValLeuPheValLeu 294767 : CAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTA : 294823 60 : ValProCysPheLeuTyrMetSerLeuGluGluAsnAspIleGlnMetLysLeuAsnA : 79 ||||||||| ! !!:! !!!!.!.! ...::::::::::::|||:!!!!. ValProCysGlyTyrPheCysValPheHisValLysAsnValLysLeuLysMetLysL 294824 : GTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaacgtgaaattgaaGATGAAAC : 294883 80 : laMetGlyProLeuSerHisTrpIleMetGlyThrIleAsnTyrTrpLeuLeuLeuTh : 98 !:!!||||||:!! !:!!! !!::!:..!! !:!!!..||| ! ! !|||:!! euLeuGlyProValLeuTyrSerMetLeuSerMetLeuArgTyrSerCysLeuValLe 294884 : TTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTT : 294940 99 : rArgSerAsnAspIleArgGluCysValArgHisMetGluAsnAspTrpArgLeuVal : 117 !!:!!!! !! .!!!:!.!.|||:!!..! !!!!:||||||||||||!:!|||:!! uLysThrProAlaPheLysHisCysIleGluAspIleGluAsnAspTrpLysLeuIle 294941 : GAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGAGAACGATTGGAAGTTGATC : 294997 118 : GlnArgAlaAspAspGlnTrpValMetLeuArgTyrAlaArgIleGlyArgPheValA : 137 .!.!.! !!!!: !!!:! !:!!|||:!!!:! !!|||! !:!! !!:! :!!. AspAsnProGluHisArgAlaIleMetIleLysAsnAlaMetValThrGlnArgMetT 294998 : GATAATCCGGAACACCGAGCGATCATGATCAAGAACGCGATGGTCACGCAGAGGATGA : 295057 138 : laAlaPheCysAlaValPheMetGlnSerGlyThrLeuLeuPheGlnValValLysAl : 156 !!!.! !! !.!!:!!.!.!!: ! |||..!.!!:!!! !!:!!!.!.!:!! hrValAlaPheThrIleIleIleTyrSerSerAlaValSerTyrHisAlaIleValPr 295058 : CCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgcc : 295114 157 : aMetThrSerMetProValValValGlyAsnGluThrValLeuValHisProMetThr : 175 ... ||| ...:!!! !..!!!.:!!!.! ! !:!!!.! !!:!: !! oPhePheSer---AsnAlaLeuGluAsnLysLysAsnAsnThrIleArgAlaLeuPro 295115 : atttttttca---aacgctTTGGAGAACAAGAAGAATAATACGATTCGTGCGTTACCA : 295168 176 : CysProIleTyrSerLysPheValAspThrArgPheSerProAlaAsnGluIleMetL : 195 !||| !|||..! !|||||||||.!! !! !||||||.!! !!||||||!!: IleProGlyTyrGluLeuPheValAspAlaTyrSerSerProThrTyrGluIleIleA 295169 : ATTCCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGTCCTACCTACGAGATCATAA : 295228 196 : euValValGlnIleLeuSerCysPheValValAsnSerIleThrVal : 210 !..! !! .!!:!!! !! ||| !!||||||!.!! ! !||| rgThrHisLeuPheValTyrSerPhePheValAsnLysThrGlyVal 295229 : GAACTCATCTCTTTGTTTACTCGTTCTTCGTCAACAAAACTGGTGTC : 295275 vulgar: CbirOr23 3 210 . KQ414889.1 294651 295275 + 173 M 29 87 G 0 6 M 127 381 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294652 295275 173 + . gene_id 25 ; sequence CbirOr23 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294652 295275 . + . KQ414889.1 exonerate:protein2genome:local exon 294652 295275 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294652 295275 173 + . alignment_id 25 ; Query CbirOr23 ; Align 294652 4 87 ; Align 294745 33 381 ; Align 295126 161 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 333 -> 392 Target range: 238625 -> 238802 334 : GlnCysLysThrValGlyGluLysAlaTyrMetThrAspTrpTyrLysLeuProHisL : 353 |||||| !! !||||||||| !!.!|||||||||||||||||| ! ||||||!!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 354 : ysThrAlaArgGlyLeuLeuLeuIleIleAlaArgSerSerAsnValIleLysIleTh : 372 :!! ! !! !! !|||:!!||||||||| !||||||!:! |||:!!|||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 373 : rAlaGlyLysLeuPheGlnLeuSerIleAlaThrPheGlyAspValIleLysThrSer : 391 ||||||||||:!!!!.!!.:!!|||:!! !|||||||||||||||! !:!!|||!:! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 392 : Val : 392 :!! Leu 238798 : CTT : 238802 vulgar: CbirOr23 333 392 . KQ414889.1 238625 238802 + 170 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238802 170 + . gene_id 26 ; sequence CbirOr23 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238802 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238802 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238802 170 + . alignment_id 26 ; Query CbirOr23 ; Align 238626 334 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 333 -> 393 Target range: 244655 -> 244835 334 : GlnCysLysThrValGlyGluLysAlaTyrMetThrAspTrpTyrLysLeuProHisL : 353 |||||| !! !||||||||| !!.!|||||||||||||||||| ! ||||||!!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 354 : ysThrAlaArgGlyLeuLeuLeuIleIleAlaArgSerSerAsnValIleLysIleTh : 372 :!! ! !! !! !|||:!!||||||||| !||||||!:!! |||:!!:!!||||| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 373 : rAlaGlyLysLeuPheGlnLeuSerIleAlaThrPheGlyAspValIleLysThrSer : 391 ||||||||||:!!!!.!!.:!!|||:!! !|||||||||||||||! !:!!|||!.! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrLys 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAA : 244827 392 : ValIle : 393 :!!:!! LeuVal 244828 : CTTGTT : 244835 vulgar: CbirOr23 333 393 . KQ414889.1 244655 244835 + 170 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244835 170 + . gene_id 27 ; sequence CbirOr23 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244835 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244835 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244835 170 + . alignment_id 27 ; Query CbirOr23 ; Align 244656 334 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 332 -> 387 Target range: 283273 -> 283438 333 : GluGlnCysLysThrValGlyGluLysAlaTyrMetThrAspTrpTyrLysLeuProH : 352 ..!|||||||||! !||||||||| !!.!|||||||||:!!! !!:! ! |||||| ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 353 : isLysThrAlaArgGlyLeuLeuLeuIleIleAlaArgSerSerAsnValIleLysIl : 371 !!||| ! !! !..!|||||||||||||||:!!||||||||| ||||||||||| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 372 : eThrAlaGlyLysLeuPheGlnLeuSerIleAlaThrPheGlyAspVal : 387 |||||||...||||||...|||::!||| !||||||! !|||||| eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspVal 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTA : 283438 vulgar: CbirOr23 332 387 . KQ414889.1 283273 283438 + 151 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283438 151 + . gene_id 28 ; sequence CbirOr23 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283438 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283438 151 + . alignment_id 28 ; Query CbirOr23 ; Align 283274 333 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 181 -> 238 Target range: 202712 -> 202883 182 : PheValAspThrArgPheSerProAlaAsnGluIleMetLeuValValGlnIleLeuS : 201 .!!:!!|||..!|||!:!||||||!.!|||||||||.!.!!! !:!!!:!|||:!!: IleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleValA 202713 : ATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAG : 202770 202 : erCysPheValValAsnSerIleThrValGlyAlaCysSerLeuAlaAlaValPheAl : 220 !! !.!!:!!:!!:!!.!!:!!|||||||||||||||!!!|||.!!|||:!!||||| laValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAl 202771 : CTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGC : 202827 221 : aMetHisAlaTyrGlyGlnLeuSerMetLeuPheSerTrpLeuAsnGluLeuVal : 238 |:!:|||! !! !||||||:!!..!:!:|||.!.:!!||||||.!..!.|||:!! aValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMet 202828 : GGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATG : 202883 vulgar: CbirOr23 181 238 . KQ414889.1 202712 202883 + 148 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202713 202883 148 + . gene_id 29 ; sequence CbirOr23 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202713 202883 . + . KQ414889.1 exonerate:protein2genome:local exon 202713 202883 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202713 202883 148 + . alignment_id 29 ; Query CbirOr23 ; Align 202713 182 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 329 -> 387 Target range: 214848 -> 215022 330 : IleLeuThrGluGlnCysLysThrValGlyGluLysAlaTyrMetThrAspTrpTyrL : 349 |||:!! !:!!|||||||||! !||||||||| !:!!||||||! !!!:||||||: IleMetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrA 214849 : ATTATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACC : 214906 350 : ysLeuProHisLysThrAlaArgGlyLeuLeuLeuIleIleAlaArgSerSerAsnVa : 368 :!|||||| !!!.! ! !! ! !!! !:!!||||||!!:|||! !|||!:!::: rgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSe 214907 : GATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATC : 214963 369 : lIleLysIleThrAlaGlyLysLeuPheGlnLeuSerIleAlaThrPheGlyAspVal : 387 !:!!|||.!!|||||||||!!.:!! ! :!!|||||||||::!||||||.!!..!||| rValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214964 : CGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215020 vulgar: CbirOr23 329 387 . KQ414889.1 214848 215022 + 145 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214849 215022 145 + . gene_id 30 ; sequence CbirOr23 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214849 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214849 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214849 215022 145 + . alignment_id 30 ; Query CbirOr23 ; Align 214849 330 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 263 -> 334 Target range: 263671 -> 264648 264 : SerPheIleSerArgMetGluSerLeuMetGlnHisIleCysLeuValGluLeuValG : 283 |||||||||..!|||!!::!!!:!:!!|||... ||||||!!!||||||||| !! SerPheIleAspArgIleLysAsnValMetSerThrIleCysPheValGluLeuPheL 263672 : AGTTTCATAGATCGTATTAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCA : 263729 284 : lyCysThrLeuAsnMetCys{Le} >>>> Target Intron 1 >>>> {u}Le : 291 !..!||||||:!!!!:|||{:!} 764 bp {!}:! ysAlaThrLeuAspIleCys{Il}+- +-{e}Il 263730 : AGGCTACGCTGGATATATGC{AT}gc.........................aa{T}AT : 264517 292 : uAlaTyrTyrThrIleThrAsnTrpSerAsnPheAspAlaGlyArgMetThrSerTyr : 310 !.!! ! !!..!.!! !.!.|||..!!:! ||| ...:::|||!!!||| eThrIleAspValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyr 264518 : AACAATTGACGTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATAT : 264574 311 : PhePheValTyrValSerMetAlaPheAsnIlePheIlePheCysTyrIleGlyGluI : 330 |||.!.:!! :!!||||||..! !|||||||||:!!.!.|||||||||||||||| PheMetIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluI 264575 : TTCATGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGA : 264634 331 : leLeuThrGluGln : 334 |||||||||||||| leLeuThrGluGln 264635 : TATTGACTGAGcag : 264648 vulgar: CbirOr23 263 334 . KQ414889.1 263671 264648 + 140 M 26 78 S 0 2 5 0 2 I 0 760 3 0 2 S 1 1 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 263672 264648 140 + . gene_id 31 ; sequence CbirOr23 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 263672 263751 . + . KQ414889.1 exonerate:protein2genome:local exon 263672 263751 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263752 263753 . + . intron_id 1 ; splice_site "GC" KQ414889.1 exonerate:protein2genome:local intron 263752 264515 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264514 264515 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 264516 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264516 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 263672 264648 140 + . alignment_id 31 ; Query CbirOr23 ; Align 263672 264 78 ; Align 264517 291 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 333 -> 396 Target range: 230244 -> 230433 334 : GlnCysLysThrValGlyGluLysAlaTyrMetThrAspTrpTyrLysLeuProHisL : 353 ||||||!:!! !||||||||||||:!!||||||! !!!:||||||::!||| !! ! GlnCysArgLysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyA 230245 : CAGTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAA : 230302 354 : ysThrAlaArgGlyLeuLeuLeuIleIleAlaArgSerSerAsnValIleLysIleTh : 372 !.! ! !! ! !!! !:!!||||||||||||! !|||!:! ! !! |||.!!|| snLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheTh 230303 : ACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTAC : 230359 373 : rAlaGlyLysLeuPheGlnLeuSerIleAlaThrPheGlyAspValIleLysThrSer : 391 |||||||!!.:!! !!:!!||||||:!! !||||||.!!||||||! !! ! !! ! rAlaGlyAsnMetValGluLeuSerValAsnThrPheSerAspValSerIleIlePhe 230360 : AGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGACGTAAGTATCATATTC : 230416 392 : ValIleTyrLeuAsn : 396 !:!!||| !||| SerValTyrThrAsn 230417 : TCTGTTTACACGAAT : 230433 vulgar: CbirOr23 333 396 . KQ414889.1 230244 230433 + 136 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230245 230433 136 + . gene_id 32 ; sequence CbirOr23 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230245 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230245 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230245 230433 136 + . alignment_id 32 ; Query CbirOr23 ; Align 230245 334 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 333 -> 387 Target range: 206239 -> 206401 334 : GlnCysLysThrValGlyGluLysAlaTyrMetThrAspTrpTyrLysLeuProHisL : 353 ||| ! ! ..!|||||| !! !:!!! !! !..!:!!||||||:::||||||:!!! GlnAsnHisValValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnA 206240 : CAGAACCACGTCGTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACA : 206297 354 : ysThrAlaArgGlyLeuLeuLeuIleIleAlaArgSerSerAsnValIleLysIleTh : 372 :! !||||||..!:!!:!!||||||||||||! !|||!:! !! !||||||:!!|| rgHisAlaArgSerMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuTh 206298 : GACATGCGCGCTCTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAAC : 206354 373 : rAlaGlyLysLeuPheGlnLeuSerIleAlaThrPheGlyAspVal : 387 ||||||||||:!!|||:!!:!!|||:!!|||!:!||| !|||||| rAlaGlyLysMetPheGluMetSerLeuAlaSerPheThrAspVal 206355 : AGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTCACCGATGTA : 206401 vulgar: CbirOr23 333 387 . KQ414889.1 206239 206401 + 135 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206240 206401 135 + . gene_id 33 ; sequence CbirOr23 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206240 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206240 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206240 206401 135 + . alignment_id 33 ; Query CbirOr23 ; Align 206240 334 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 333 -> 396 Target range: 292389 -> 292578 334 : GlnCysLysThrValGlyGluLysAlaTyrMetThrAspTrpTyrLysLeuProHisL : 353 ||| !!!.. !:!!!.!.!. :!!||| |||!!:||||||!!.||||||...: GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 354 : ysThrAlaArgGlyLeuLeuLeuIleIleAlaArgSerSerAsnValIleLysIleTh : 372 :!! !||||||! !:!!:!!|||:!::!!|||! !!!!!.!:!! !||||||:!!|| rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 373 : rAlaGlyLysLeuPheGlnLeuSerIleAlaThrPheGlyAspValIleLysThrSer : 391 ||||||||||:!!||| ||||||:!: !|||||||||! !||| !:!!:!!!.! rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSerLys 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCAAAA : 292561 392 : ValIleTyrLeuAsn : 396 :!!:!!! :!!:!! LeuValLeuIleHis 292562 : CTAGTCTTGATACAC : 292578 vulgar: CbirOr23 333 396 . KQ414889.1 292389 292578 + 135 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 292578 135 + . gene_id 34 ; sequence CbirOr23 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292390 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 292578 135 + . alignment_id 34 ; Query CbirOr23 ; Align 292390 334 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 297 -> 334 Target range: 283096 -> 283207 298 : AsnTrpSerAsnPheAspAlaGlyArgMetThrSerTyrPhePheValTyrValSerM : 317 .!.||||||:!! !|||!.! !! !||||||!!!:!!|||.!.:!! !:!!|||| GluTrpSerAspGlyAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 283097 : GAATGGTCTGACGGCGATGTTCAGACTATGACTACGCATTTCATGATCCTTATATCCA : 283154 318 : etAlaPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrGluGln : 334 ||...|||||||||||| ! ! ! !|||||||||:!!||||||||||||||| etCysPheAsnIlePheThrValTyrTyrIleGlyLysIleLeuThrGluGln 283155 : TgtgtttcaacatttttacAGTATACTATATCGGGAAAATACTAACTGAACAG : 283207 vulgar: CbirOr23 297 334 . KQ414889.1 283096 283207 + 108 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283097 283207 108 + . gene_id 35 ; sequence CbirOr23 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283097 283207 . + . KQ414889.1 exonerate:protein2genome:local exon 283097 283207 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283097 283207 108 + . alignment_id 35 ; Query CbirOr23 ; Align 283097 298 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 289 -> 334 Target range: 214605 -> 214740 290 : LeuLeuAlaTyrTyrThrIleThrAsnTrpSerAsnPheAspAlaGlyArgMetThrS : 309 :::::: ::: ::: .!.|||!:!::: !:!! ! !! !! ..!! IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 310 : erTyrPhePheValTyrValSerMetAlaPheAsnIlePheIlePheCysTyrIleGl : 328 !!||| ! ! :!!|||:!!|||:::...||||||||||||||||||||||||||||| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 329 : yGluIleLeuThrGluGln : 334 ||||:!!:!!:!!|||||| yGluLeuValSerGluGln 214721 : CGAGCTTGTGTCTGAACAG : 214740 vulgar: CbirOr23 289 334 . KQ414889.1 214605 214740 + 107 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 214740 107 + . gene_id 36 ; sequence CbirOr23 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 214740 107 + . alignment_id 36 ; Query CbirOr23 ; Align 214606 290 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 279 Query range: 12 -> 267 Target range: 204224 -> 204992 13 : GlnAspLeuLysTyrAlaSerThrPheLeuProAsnIleLeuAsnAlaLeuGlyIleT : 32 :!!||||||!:!||||||!!! !|||:!! ! ||||||... !:!!||| | GluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaT 204225 : GAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGT : 204282 33 : rpLeuSerLeuGlyLysArgLysSerIleCysLysArgLeuValAspPhePhePheIl : 51 || !!:!! ! !!.!...||| ! !! !||||||||| .!. rp---ProIleProValAsnSerSerProPheThrArgLeuValArgArgIleGluHi 204283 : GG---CCGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACA : 204336 52 : ePheLeuSerPheGlyLeuIlePheAlaValLeuIleProGlySerLeuPheTrpVal : 70 ! ! :!!!!!::: |||...||| :!!:!!:!!|||||| !|||!:! ! !! sValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPhe 204337 : CGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTC : 204393 71 : PheLys<->GlyAsnAlaArgThrArgLeuArgMetSerThrPheThrMetTyrValI : 89 .!.||| !|||!.!!:!! !||||||!:!!!: ! ! ! !:!! !! !! LeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysS 204394 : CTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCA : 204453 90 : leGlyThrIleGlyLysTyrSerIleLeuIleLeuGlyGlnAspArgIleArgArgCy : 108 ! ! !.!! !|||||||||:!!:!!:!!! ! !! |||!:!|||!:!!:! ! erIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSe 204454 : GCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAG : 204510 109 : sTrpLysTyrIleGluGluAspTrpArgAsnValAlaLysAlaAspAlaArgAsnMet : 127 !! !!!. !|||..!...||||||! !.!. |||! !! !!!: !||| !!: rLeuAsnThrIleArgArgAspTrpIleGlu---AlaThrAspGluAsnArgLeuIle 204511 : TTTGAACACCATCAGACGCGACTGGATAGAG---GCTACGGATGAAAATCGGTTGATT : 204564 128 : IleLeuGluCysAlaGlyValGlyArgArgLeuAlaAlaIleCysGlyTrpPheTyrP : 147 .!!! !..! ||| !:!!|||||||||:!! ! !|||...!.! ! ! PheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetT 204565 : TTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGT : 204624 148 : heCysSerGlyLeuAlaGlyArgLeuLeuProLeuLeuTyrTrpGlyLysIleValAs : 166 :! !!.!!||||||..! !||| !:!!! !! !|||! ! |||! !|||||| yrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleValTh 204625 : ACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTAAC : 204681 167 : pGlnAsnAsnValThrValLysLeuLeuProAsnProAlaTyrLeuPheSerLeuAsn : 185 ! :!!|||||||||:!!!:!! !|||||| !|||!.!|||... ...||| rProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePheAsn 204682 : ACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaac : 204738 186 : MetGlnAlaThrProValTyrGluIleMetTyrSerValGlnGlyAlaTyrGlyLeuV : 205 !||| !:!!||| !|||||||||:!:!:!! !:!!||| ! ! !|||!!!| GluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheV 204739 : GAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTG : 204798 206 : alThrValSerIleThrAlaSerAlaProGlyLeuIleIleValPheValMetHisAl : 224 ||||| !:!!:!!! !::!.!!.!! !|||:!! ! :!!||||||:!:||||| alThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAl 204799 : TTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGC : 204855 225 : aCysGlyGlnLeuLysIleLeuMetAsnLeuMetArgGluPheIleGluGluGlnArg : 243 ||||.!!..!|||!:!||||||:!!||| !|||!.!! !.!!:!:!!::!! ! ! aCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAlaAsp 204856 : GTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCGGAC : 204912 244 : GlnLysGlu<-><->MetAspLysLysLeuAlaAsnIleValGluHisGlnIleLysI : 261 ..!! ||| :!! !!!:!|||:!!|||:!!|||||||||:!!|||! |||| MetThrGluThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrLysI 204913 : ATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGAAGA : 204972 262 : leArgSerPheLeuGluLeu : 267 ||!:!!!!! :!!|||:!! leLysArg***ValGluVal 204973 : TAAAGAGGTGAGTGGAAGTT : 204992 vulgar: CbirOr8 12 267 . KQ414889.1 204224 204992 + 279 M 20 60 G 1 0 M 39 117 G 0 3 M 46 138 G 1 0 M 127 381 G 0 6 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204225 204992 279 + . gene_id 1 ; sequence CbirOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204225 204992 . + . KQ414889.1 exonerate:protein2genome:local exon 204225 204992 . + . insertions 9 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 204225 204992 279 + . alignment_id 1 ; Query CbirOr8 ; Align 204225 13 60 ; Align 204285 34 117 ; Align 204405 73 138 ; Align 204543 120 381 ; Align 204930 247 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 278 Query range: 52 -> 261 Target range: 208317 -> 208956 53 : LeuSerPheGlyLeuIlePheAlaValLeuIleProGlySerLeuPheTrpValPhe< : 72 |||||| ! !!|||:!! ! !:!!:!!|||||| !.!!:!!||| !:!!.!! LeuSerHisCysLeuLeuGlyPheIleValIleProThrGlyMetPheAlaIleLeuV 208318 : CTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATGTTCGCGATCCTCG : 208375 73 : ->LysGlyAsnAlaArgThrArgLeuArgMetSerThrPheThrMetTyrValIleGl : 90 ! !:!! ! ! !!:!|||!:!!!:!!!!:! ! !! !:! !!!!: alValGluAspPheTyrAspGlnLeuLysIleCysSerAlaLeuSerPhePheMetMe 208376 : TAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGAT : 208432 91 : yThrIleGlyLysTyrSerIleLeuIleLeuGlyGlnAspArgIleArgArgCysTrp : 109 !.!!.!! !|||||| !|||:!!! !:!! !!:!!! ! !||||||!:!||| tAlaPheThrLysTyrValIleMetThrValArgGluGlyAspIleArgLysCysVal 208433 : GGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGACATACGGAAGTGTGTC : 208489 110 : LysTyrIleGluGluAspTrpArgAsnValAlaLysAlaAspAlaArgAsnMetIleL : 129 :!!|||:!!|||! |||||||||||||||! ! ! ! !!!:! !|||!!.!!:!!:| GluTyrValGluAlaAspTrpArgAsnValGluHisGluGluAspArgLysIleMetL 208490 : GAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAGGACAGGAAGATCATGT : 208549 130 : euGluCysAlaGlyValGlyArgArgLeuAlaAlaIleCysGlyTrpPheTyrPheCy : 148 ||!!: !|||.!! !!!.!|||!:!||| !!.!||||||||| ||| !:! ! euAspAsnAlaSerPheAlaArgLysLeuIleValIleCysGlyAlaPheMetTyrGl 208550 : TGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCGGAGCTTTCATGTACGG : 208606 149 : sSerGlyLeuAlaGlyArgLeuLeuProLeuLeuTyrTrpGlyLysIleValAspGln : 167 .!. ::: :!! ! !! !||| ! ! ! !|||:!!|||!!::!! yGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAspLysValValGluGlu 208607 : AGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAG : 208663 168 : <->AsnAsnValThrValLysLeuLeuProAsnProAlaTyrLeuPheSerLeuAsnM : 186 ..!|||:!!||| !!:! !||| ! !!|||!.! ! !|||! !|||:!!: GlyGlyAsnLeuThrTyrArgArgLeuValTyrProValProLysPheIleLeuAspV 208664 : GGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCTAAGTTCATTCTGGACG : 208723 187 : etGlnAlaThrProValTyrGluIleMetTyrSerValGlnGlyAlaTyrGlyLeuVa : 205 !:!:! !!:!|||||| !!||||||.!.|||!!!|||||| ! !! |||!!!|| alArgTyrSerProValAsnGluIlePheTyrThrValGlnLeuLeuSerGlyPheVa 208724 : TTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAATTGTTGTCGGGTTTCGT : 208780 206 : lThrValSerIleThrAlaSerAlaProGlyLeuIleIleValPheValMetHisAla : 224 |.!! !!:!||||||!.!.!!||| !|||||| ! :!!.!!!.!||||||||| lAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAla 208781 : TGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCG : 208837 225 : CysGlyGlnLeuLysIleLeuMetAsnLeuMetArgGluPheIleGlu<-><->GluG : 242 ||||||||||||:!!|||||||||::!! !|||..!:!!!!.:!!!!: |||. CysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeuValAspGlyArgGluA 208838 : TGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTGGTCGATGGACGGGAGG : 208897 243 : lnArgGlnLysGluMetAspLysLysLeuAlaAsnIleValGluHisGlnIleLysIl : 261 !...!:!!|||.!.:!!|||:!!!:!||||||||||||||||||!!.!!.:!!::!:! spGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleValGluGlnHisValArgVa 208898 : ACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCGTGGAGCAGCATGTTCGAGT : 208954 262 : e : 261 : l 208955 : G : 208956 vulgar: CbirOr8 52 261 . KQ414889.1 208317 208956 + 278 M 19 57 G 0 3 M 96 288 G 0 3 M 73 219 G 0 6 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208318 208956 278 + . gene_id 2 ; sequence CbirOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208318 208956 . + . KQ414889.1 exonerate:protein2genome:local exon 208318 208956 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208318 208956 278 + . alignment_id 2 ; Query CbirOr8 ; Align 208318 53 57 ; Align 208378 72 288 ; Align 208669 168 219 ; Align 208894 241 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 254 Query range: 24 -> 279 Target range: 226954 -> 228124 25 : IleLeuAsnAlaLeuGlyIleTrpLeuSerLeuGlyLysArgLysSerIleCysLysA : 44 :!:|||!!. !!||||||||||||! !||| ..!:::!:!!..||| ! !| LeuLeuLysProLeuGlyIleTrpProSer---SerArgLysSerSerArgIleGlyA 226955 : CTGTTGAAACCACTCGGTATCTGGCCGTCG---TCGCGCAAAAGCTCTCGAATAGGAA : 227009 45 : rgLeuValAspPhePhePheIlePheLeuSerPheGlyLeuIlePheAlaValLeuIl : 63 ||! ! !!..!!::!!..!. !||||||!!!!:!!.!|||!!: ! !! !|||:! rgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuVa 227010 : GATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGT : 227066 64 : eProGlySerLeuPheTrpValPheLys<->GlyAsnAlaArgThrArgLeuArgMet : 81 ! !!.!!.!!|||!:! !|||.!.:!! !..!||| !!.!! !|||!:!||| lSerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMet 227067 : CTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATG : 227123 82 : SerThrPheThrMetTyrValIleGlyThrIleGlyLysTyrSerIleLeuIleLeuG : 101 ! ! ! ! ! !:! !! !:!!:!! !|||||||||!!:|||! !!! IleGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheH 227124 : ATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCC : 227183 102 : lyGlnAspArgIleArgArgCysTrpLysTyrIleGluGluAspTrpArgAsnValAl : 120 !:!!||| !|||! !..!||| :!! |||:!! !||||||!:!|||:!! isGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleAr 227184 : ACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAG : 227240 121 : aLysAlaAspAlaArgAsnMetIleLeuGluCysAlaGlyValGlyArgArgLeuAla : 139 ! ! !!!:! !||||||:!!!!::!! !! !||| ! !||||||!:!||| ! gTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIle 227241 : ATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATC : 227297 140 : AlaIleCysGlyTrpPheTyrPheCysSerGlyLeuAlaGlyArgLeuLeuProLeuL : 159 .!!|||||| !!::||| !||| ||| ::: :!!:!! !! !: ThrIleCysThrPhePheValPheSerSerPheValPhePheTyrIleValValProI 227298 : ACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTA : 227357 160 : euTyrTrpGlyLysIle<->ValAspGlnAsnAsnValThrValLysLeuLeuProAs : 177 !! !! |||!..:!! ..!!!:.!....||| !!:! !! ! !:!!||| leAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPh 227358 : TCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTT : 227414 178 : nProAlaTyrLeuPheSerLeuAsnMetGlnAlaThrProValTyrGluIleMetTyr : 196 !||| ! !.!!! ! !:!!:!:!:: !!:!||| !! !!||||||.!.!:! eProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIlePhePhe 227415 : TCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTT : 227471 197 : SerValGlnGlyAlaTyrGlyLeuValThrValSerIleThrAlaSerAlaProGlyL : 216 ||||||||| !!.! |||:!!||| ! !.!!:!!|||:!!:!!||| !.!!: SerValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerM 227472 : TCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTA : 227531 217 : euIleIleValPheValMetHisAlaCysGlyGlnLeuLysIleLeuMetAsnLeuMe : 235 !! ! !:!!.!!!.!:!:|||||||||||||||:!!:!!:!:|||:!!::!! !:! etAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLe 227532 : TGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCT : 227588 236 : tArgGluPheIleGlu<-><->GluGlnArgGlnLysGluMetAspLysLysLeuAla : 252 ! !!.!.!!.|||!!: ! !.!.! !...||| !:!!||| ! !:!:!!||| uGlyHisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAspAspArgIleAla 227589 : GGGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCT : 227645 253 : AsnIleValGluHisGlnIleLysIleArg{Se} >>>> Target Intron 1 > : 263 !:!|||||| |||!!.:!!::!||| !{!:} 396 bp SerIleValThrHisHisValArgIleLeu{As}++ 227646 : AGCATCGTCACTCACCACGTTCGAATATTG{AA}gt...................... : 227682 264 : >>> {r}PheLeuGluLeuValGluHisAlaMetHisGlnIleSerPheIleGlu : 279 {!}||||||! |||:!!||| ! .!!|||!!.||||||:!!|||:!!||| ++{n}PheLeuAlaLeuIleGluLysThrMetGlnGlnIleAlaPheValGlu 227683 : ...ag{C}TTTCTGGCCCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAA : 228124 vulgar: CbirOr8 24 279 . KQ414889.1 226954 228124 + 254 M 10 30 G 1 0 M 37 111 G 0 3 M 92 276 G 0 3 M 76 228 G 0 6 M 22 66 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226955 228124 254 + . gene_id 3 ; sequence CbirOr8 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226955 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226955 227679 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228124 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228124 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226955 228124 254 + . alignment_id 3 ; Query CbirOr8 ; Align 226955 25 30 ; Align 226985 36 111 ; Align 227099 73 276 ; Align 227378 165 228 ; Align 227612 241 66 ; Align 228077 264 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 244 Query range: 93 -> 261 Target range: 304359 -> 304863 94 : LysTyrSerIleLeuIleLeuGlyGlnAspArgIleArgArgCysTrpLysTyrIleG : 113 :!!|||||||||||| |||::: ! ! ! ! ! !!:!!. GlnTyrSerIleLeuProCysLysLeuLysArgLeuValPheArg***GlyAspLeuS 304360 : CAATATTCTATACTTccttgcaaattaaaacgtttaGTGTTTCGATAAGGGGATCTCT : 304417 114 : luGluAspTrpArgAsnValAlaLysAlaAspAlaArgAsnMetIleLeuGluCysAl : 132 .. ! !::..!.!.|||! !... ! ! !|||.!.|||!!:|||:!!! !!. erThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysTyrGl 304418 : CTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGG : 304474 133 : aGlyValGlyArgArgLeuAlaAlaIleCysGlyTrpPheTyrPheCysSerGlyLeu : 151 ! !:!!||||||!.!|||.!! !||||||!.! ||| !:! !.!!||| ! yGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThr 304475 : GCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACC : 304531 152 : AlaGlyArgLeuLeuProLeuLeuTyrTrpGlyLysIleValAspGlnAsnAsnValT : 171 ! !!.! !:!! !! !!!! |||! ! !||||||:!! !!||| !| IleTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgT 304532 : ATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTA : 304591 172 : hrValLysLeuLeuProAsnProAlaTyrLeuPheSerLeuAsnMetGlnAlaThrPr : 190 ||:!!|||! !||| ! !!|||.!!||| ! !! !!!!:!!:!:|||.!!!:!|| hrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerPr 304592 : CGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCC : 304648 191 : oValTyrGluIleMetTyrSerValGlnGlyAlaTyrGlyLeuValThrValSerIle : 209 |:!!||||||:!::!:|||! !|||!!. !! !! !|||! !|||! ! !|||||| oIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIle 304649 : TATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATA : 304705 210 : ThrAlaSerAlaProGlyLeuIleIleValPheValMetHisAlaCysGlyGlnLeuL : 229 ||||||.!!||| !|||||| ! !:!!|||!.!! |||||||||||||||:!! ThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleA 304706 : ACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTG : 304765 230 : ysIleLeuMetAsnLeuMetArgGluPheIleGluGluGlnArgGlnLysGluMetAs : 248 ! |||:!!|||::!! !:!! !!!!:.!!:!!.!....:!!..!..!...!!::!:|| spIleValMetSerArgLeuGlyAspLeuValAsnSerLysGluSerSerAspLeuAs 304766 : ATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCATCTGATTTAGA : 304822 249 : pLysLysLeuAlaAsnIleValGluHisGlnIleLysIle : 261 ||||::!||| !.!.||||||||||||!!.:!:::!||| pLysArgLeuIleGluIleValGluHisHisLeuArgIle 304823 : TAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATT : 304863 vulgar: CbirOr8 93 261 . KQ414889.1 304359 304863 + 244 M 168 504 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304360 304863 244 + . gene_id 4 ; sequence CbirOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304360 304863 . + . KQ414889.1 exonerate:protein2genome:local exon 304360 304863 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304360 304863 244 + . alignment_id 4 ; Query CbirOr8 ; Align 304360 94 504 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 243 Query range: 4 -> 230 Target range: 289699 -> 290377 5 : GlnProProAsnGluTyrTyrLeuGlnAspLeuLysTyrAlaSerThrPheLeuProA : 24 !::||| !!|||!!: !||| ! !|||:!!:::|||.!!! ! !!!.! !! ! ArgProSerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisT 289700 : CGTCCGTCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATT : 289757 25 : snIleLeuAsnAlaLeuGlyIleTrpLeuSerLeuGlyLysArgLysSerIleCysLy : 43 ||||||!!. !!:!!|||!!:!::! !! !:!! !!..||| !|||! ! !!:! rpIleLeuLysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGl 289758 : GGATCTTGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGA : 289814 44 : sArgLeuValAspPhePhePheIlePheLeuSerPheGlyLeuIlePheAlaValLeu : 62 !||| !!.!... ! !!..!.|||.!.:!!!!!! !..!:!!:!! !:!!:!! uArgThrAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIle 289815 : ACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATA : 289871 63 : IleProGlySerLeuPheTrpValPheLysGlyAsn<->AlaArgThrArgLeuArgM : 81 :!!||| !|||! ! ! :!!|||!..! !||| !!.!||| !:!!!:!! ValProPheSerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysA 289872 : GTACCGTTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGA : 289931 82 : etSerThrPheThrMetTyrValIleGlyThrIleGlyLysTyrSerIleLeuIleLe : 100 ! ! !! !!:! !:!: !|||.!! !||||||!!! !!!!! !:! snLeuGlyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMe 289932 : ATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCAT : 289988 101 : uGlyGlnAspArgIleArgArgCysTrpLysTyrIleGluGluAspTrpArgAsnVal : 119 ! ! ... !||| !!|||||| !|||:!!||||||..!||||||!:!! :!! tLysGlySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeu 289989 : GAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTG : 290045 120 : AlaLysAlaAspAlaArgAsnMetIleLeuGluCysAlaGlyValGlyArgArgLeuA : 139 ! ! ! !||| !||| !!!:!!:|||..!! !!.! !:!!.!!|||!.!||| ArgAspGluAspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuI 290046 : CGTGACGAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCA : 290105 140 : laAlaIleCysGlyTrpPheTyrPheCysSerGlyLeuAlaGlyArgLeuLeuProLe : 158 ! !:!:|||!.! |||! !:! .!!||||||:!! !!.! !:!! !! leLysLeuCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIlePr 290106 : TAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACC : 290162 159 : uLeuTyrTrpGlyLysIleValAspGlnAsnAsnValThrValLysLeuLeuProAsn : 177 !|||!:!! ! !|||! !|||:!! ..!|||||||||:!!!:!! !||| !! !! oLeuPheSerLysLysSerValAsn---GlyAsnValThrIleArgProLeuThrTyr 290163 : GTTGTTCTCGAAGAAGAGCGTGAAC---GGTAACGTGACTATCAGACCTCTAACTTAT : 290216 178 : ProAlaTyrLeuPheSerLeuAsnMetGlnAlaThrProValTyrGluIleMetTyrS : 197 |||!.!||| ! ! !!!!:!!:!:||| !!:!|||!.!|||||||||:!:!:!! ProGlyTyrGluGluPhePheAspValGlnLysSerProAlaTyrGluIleValPheC 290217 : CCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCT : 290276 198 : erValGlnGlyAlaTyrGlyLeuValThrValSerIleThrAlaSerAlaProGlyLe : 216 !!:!!!!. !!!.!|||! !:!!:!!|||!.!!:!|||||| !:!!||| !.!!|| ysMetHisCysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLe 290277 : GTATGCACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTT : 290333 217 : uIleIleValPheValMetHisAlaCysGlyGlnLeuLysIle : 230 |! ! :!!|||!.!! |||.!!|||||||||:!!|||||| uThrThrIlePheAlaThrHisThrCysGlyGlnIleLysIle 290334 : GACGACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATA : 290377 vulgar: CbirOr8 4 230 . KQ414889.1 289699 290377 + 243 M 70 210 G 0 3 M 92 276 G 1 0 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289700 290377 243 + . gene_id 5 ; sequence CbirOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289700 290377 . + . KQ414889.1 exonerate:protein2genome:local exon 289700 290377 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 289700 290377 243 + . alignment_id 5 ; Query CbirOr8 ; Align 289700 5 210 ; Align 289913 75 276 ; Align 290189 168 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 242 Query range: 10 -> 268 Target range: 221360 -> 222143 11 : TyrLeuGlnAspLeuLysTyrAlaSerThrPheLeuProAsnIleLeuAsnAlaLeuG : 30 ||| ! !:!!:!!|||! ::! ! !!!. !! ! ||||||!!. !!:!!| TyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleG 221361 : TACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCG : 221418 31 : lyIleTrpLeuSerLeuGlyLysArgLysSerIleCysLysArgLeuValAspPhePh : 49 ||:!!|||! !!:!! !!.!!!.! !...!!!:!! :!!|||! !:!! !!!::.! lyValTrpProAsnSerAlaAsnIleSerThrVal---GluArgTyrLeuTyrTrpLe 221419 : GTGTTTGGCCAAATTCAGCCAACATTTCCACGGTA---GAGAGATACCTCTACTGGCT : 221472 50 : ePheIlePheLeuSerPheGlyLeuIlePheAlaValLeuIleProGlySerLeuPhe : 68 ..!.! ! !!:!!!!!!:!.!!|||||| !:!!|||:!!||| !!||||||!:! uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 69 : TrpValPheLys<->GlyAsnAlaArgThrArgLeuArgMetSerThrPheThrMetT : 87 !:!!.!!:!! ! !:!!!.! !!.!|||:!!!:!:!!! ! ! !! ! ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 88 : yrValIleGlyThrIleGlyLysTyrSerIleLeuIleLeuGlyGlnAspArgIleAr : 106 :! !:!: !.!!.!! !|||||| !:!:||||||||| !:!!:!! !||||| heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 107 : gArgCysTrpLysTyrIleGluGluAspTrpArgAsnValAlaLysAlaAspAlaArg : 125 |..!||| :!! !|||||| !||||||!:!|||:!!.!! ! :!! ! ! !!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 126 : AsnMetIleLeuGluCysAlaGlyValGlyArgArgLeuAlaAlaIleCysGlyTrpP : 145 :!!!!:!!::!!||| !||| ! !!|||||||||||| ! !|||||| !!::| AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 146 : heTyrPheCysSerGlyLeuAlaGlyArgLeuLeuProLeuLeuTyrTrpGlyLysIl : 164 || !:! !!... ::: ::! ! !! !!!! ! !|||||||| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 165 : eValAspGlnAsn<->AsnValThrValLysLeuLeuProAsnProAlaTyrLeuPhe : 182 | !! |||:!! ||||||||| ! !:!! ! !||| !! !||| eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 183 : SerLeuAsnMetGlnAlaThrProValTyrGluIleMetTyrSerValGlnGlyAlaT : 202 ! !:!!:!!! !:! !!:!|||||| !!||||||:!!!:!|||:!!||| ! ! IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 203 : yrGlyLeuValThrValSerIleThrAlaSerAlaProGlyLeuIleIleValPheVa : 221 ||| !:!!! ! !|||||||||:!!:!!||| !.!!|||:!! !:!!|||!. laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 222 : lMetHisAlaCysGlyGlnLeuLysIleLeuMetAsnLeuMetArgGluPheIleGlu : 240 !:!!|||||||||||||||:!!:!!:!:||||||!:!! !:!!!:!.!.!!.|||.!. aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 241 : GluGlnArgGln<-><->LysGluMetAspLysLysLeuAlaAsnIleValGluHisG : 258 ! !:! !.!. !!..!.:!!|||!:!!:!:!!|||!!.||||||.!.!!.! GlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnH 222052 : GGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAAC : 222111 259 : lnIleLysIleArgSerPheLeuGluLeuVal : 268 !.:!!::!||| !..!!:!:!!...! !:!! isValArgIleLeuGlnTyrValArgCysIle 222112 : ACGTTCGAATATTGCAGTATGTACGTTGTATC : 222143 vulgar: CbirOr8 10 268 . KQ414889.1 221360 222143 + 242 M 31 93 G 1 0 M 30 90 G 0 3 M 96 288 G 0 3 M 76 228 G 0 6 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221361 222143 242 + . gene_id 6 ; sequence CbirOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221361 222143 . + . KQ414889.1 exonerate:protein2genome:local exon 221361 222143 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221361 222143 242 + . alignment_id 6 ; Query CbirOr8 ; Align 221361 11 93 ; Align 221454 43 90 ; Align 221547 73 288 ; Align 221838 169 228 ; Align 222072 245 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 224 Query range: 52 -> 267 Target range: 212977 -> 213634 53 : LeuSerPheGlyLeuIlePheAlaValLeuIleProGlySerLeuPhe<->TrpValP : 71 :!!!!!!:!||||||||| ! !:!!:!!|||||| !!||||||!:! !:::!! ValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuA 212978 : GTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCG : 213035 72 : heLysGlyAsnAlaArgThrArgLeuArgMetSerThrPheThrMetTyrValIleGl : 90 ! ! ||| ...:!!..!:!!! ! !.!! ! !:! !:!:!. spValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAl 213036 : ACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGC : 213092 91 : yThrIleGlyLysTyrSerIleLeuIleLeuGlyGlnAspArgIleArgArgCysTrp : 109 !.!!:!: !!|||||| ! ||||||||| ! ||| !||||||! !||| aAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysVal 213093 : TGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTC : 213149 110 : LysTyrIleGluGluAspTrpArgAsnValAlaLysAlaAspAlaArgAsnMetIleL : 129 :!!:!!!!::!! ! ||||||!:!|||:!!.!! ! ! !!!:! !!:!.!.!!:!!: GluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetA 213150 : GAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGG : 213209 130 : euGluCysAlaGlyValGlyArgArgLeuAlaAlaIleCysGlyTrpPheTyrPheCy : 148 ! ! !|||.!! !!|||!:!|||:!!!.!.!!||||||!.!!::||| !:! laLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPhePheMetTyrTh 213210 : CGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACAC : 213266 149 : sSerGlyLeuAlaGlyArgLeuLeuProLeuLeuTyrTrpGlyLysIleValAspGln : 167 .!! ! ! ! ! !|||:!! !! !:!! ! !! !|||!!:|||! :!! rGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLysMetValAlaGlu 213267 : AGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAG : 213323 168 : Asn<->AsnValThrValLysLeuLeuProAsnProAlaTyrLeuPheSerLeuAsnM : 186 :!! ||||||||| !!!:!! !:!! ! !|||!.!! !|||! !:!!:!!: AspLeuAsnValThrPheArgGlnMetValValProValSerArgPheIleValAspV 213324 : GATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATG : 213383 187 : etGlnAlaThrProValTyrGluIleMetTyrSerValGlnGlyAlaTyrGlyLeuVa : 205 !:!:! !!:!|||||| !!||||||.!.!:!! !:!!||| ! ! !|||:!!:! alArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLe 213384 : TTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACT : 213440 206 : lThrValSerIleThrAlaSerAlaProGlyLeuIleIleValPheValMetHisAla : 224 !! ! !:!!|||.!!!.! !||| !.!!||| ! !||||||!.!:!:|||||| uIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPheAlaValHisAla 213441 : GATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCT : 213497 225 : CysGlyGlnLeuLysIleLeuMetAsnLeuMetArgGluPheIleGlu<-><->GluG : 242 |||||||||:!! |||||||||!:!! !:!!..!.!.!!.|||!!: |||. CysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGlyArgGluA 213498 : TGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGTAGAGAGG : 213557 243 : lnArgGlnLysGluMetAspLysLysLeuAlaAsnIleValGluHisGlnIleLysIl : 261 !.! !...|||.!.:!!||| ! !:!:!!||| !||||||.!.!!.!!.:!:::!|| spMetSerLysAsnValAspAspArgIleAlaValIleValAsnGlnHisValArgIl 213558 : ATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGAT : 213614 262 : eArgSerPheLeuGluLeu : 267 |! !!.!!:::!!|||||| eLeuLysTrpValGluLeu 213615 : ACTGAAGTGGGTGGAATTG : 213634 vulgar: CbirOr8 52 267 . KQ414889.1 212977 213634 + 224 M 16 48 G 0 3 M 100 300 G 0 3 M 72 216 G 0 6 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212978 213634 224 + . gene_id 7 ; sequence CbirOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212978 213634 . + . KQ414889.1 exonerate:protein2genome:local exon 212978 213634 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212978 213634 224 + . alignment_id 7 ; Query CbirOr8 ; Align 212978 53 48 ; Align 213029 69 300 ; Align 213332 169 216 ; Align 213554 241 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 206 Query range: 24 -> 245 Target range: 262873 -> 263539 25 : IleLeuAsnAlaLeuGlyIleTrpLeuSerLeuGlyLysArgLysSerIleCysLysA : 44 :!:|||!!. !!:!!||| !||| !!|||..! !! |||! ! :!!| LeuLeuLysProIleGlyAlaTrp---ProLeuSerAlaSerIleSerArgMetGluA 262874 : CTGCTGAAACCGATCGGTGCATGG---CCACTGTCCGCCTCGATCTCAAGAATGGAAC : 262928 45 : rgLeuValAspPhePhePheIlePheLeuSerPheGlyLeuIlePheAlaValLeuIl : 63 ||:!!:!! |||.!!!!.||| !!:!!!!!!:! !!||||||.!.:!!..!:!!|| rgIleIleTrpPheLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIl 262929 : GAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTAT : 262985 64 : eProGlySerLeuPheTrpValPheLysGly<->AsnAlaArgThrArgLeuArgMet : 81 ||||..!! !||| ! |||.!.:!!!.! ||| !!.!! !!:!|||!:!:!: eProSerIleLeuHisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnVal 262986 : CCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTT : 263042 82 : SerThrPheThrMetTyrValIleGlyThrIleGlyLysTyrSerIleLeuIleLeuG : 101 ! ! ! ! !.!!! ! !!!: !!!.|||!!! |||:!:||| LeuGlyProLeuGlyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuH 263043 : CTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTC : 263102 102 : lyGlnAspArgIleArgArgCysTrpLysTyrIleGluGluAspTrpArgAsnValAl : 120 !... ! !|||!:! !!||| !:!!:!!:!::!!||||||||| !!! !|||.! isSerLysAspIleGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValTh 263103 : ACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGAC : 263159 121 : aLysAlaAspAlaArgAsnMetIleLeuGluCysAlaGlyValGlyArgArgLeuAla : 139 !!:! !!!:! !!:!..!!!:!!:|||:!! !||| ! !|||||| !:!!||| rArgLeuGluAspGlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAla 263160 : CAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCA : 263216 140 : AlaIleCysGlyTrpPheTyrPheCysSerGlyLeuAlaGlyArgLeuLeuProLeuL : 159 ||| !|||!.! ||| ||| !:!!..! ! !!|||:!! !! !! AlaSerCysAlaIlePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaP 263217 : GCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGT : 263276 160 : euTyrTrpGlyLysIleValAspGlnAsnAsnValThrVal<->LysLeuLeuProAs : 177 !! ! ! !|||! !||| |||.!...!! !:!! ::::!!|||||| heThrThrGlnValIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCy 263277 : TCACTACACAGGTGATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTG : 263333 178 : nProAlaTyrLeuPheSerLeuAsnMetGlnAlaThrProValTyrGluIleMetTyr : 196 !|||!.!||| ! ! !:!! :!:.!..!!!.!|||..! !!||||||.!. ! sProValTyrLysGluIleIleProValAspThrAsnProThrAsnGluIlePheLeu 263334 : TCCAGTGTACAAAGAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTC : 263390 197 : SerValGlnGlyAlaTyrGlyLeuValThrValSerIleThrAlaSerAlaProGlyL : 216 :!!..!||| ! !! |||!!!:!!..!..!:!!! !|||!.!.!!||| !|||: AlaThrGlnPheLeuSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyM 263391 : GCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTA : 263450 217 : euIleIleValPheValMetHisAlaCysGlyGlnLeuLysIleLeuMetAsnLeuMe : 235 !!! ! ||||||!.! ||||||||||||||||||!!.:!:||||||::!! !!! etThrAlaValPheAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIl 263451 : TGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGAT : 263507 236 : tArgGluPheIleGluGluGlnArgGlnLys : 245 :! !||||||:!:.!.:!!...|||.!.:!! eThrGluPheValAsnGlnSerArgAspGlu 263508 : CACGGAATTCGTGAACCAGTCCAGGGATGAG : 263539 vulgar: CbirOr8 24 245 . KQ414889.1 262873 263539 + 206 M 8 24 G 1 0 M 40 120 G 0 3 M 99 297 G 0 3 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262874 263539 206 + . gene_id 8 ; sequence CbirOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262874 263539 . + . KQ414889.1 exonerate:protein2genome:local exon 262874 263539 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 262874 263539 206 + . alignment_id 8 ; Query CbirOr8 ; Align 262874 25 24 ; Align 262898 34 120 ; Align 263021 74 297 ; Align 263321 173 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 52 -> 261 Target range: 217279 -> 217918 53 : LeuSerPheGlyLeuIlePheAlaValLeuIleProGlySerLeuPhe<->TrpValP : 71 |||!!!!:!||||||||| ! !:!!!!!:!!||| !!|||:!!!:! !:::!! LeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeuG 217280 : TTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCG : 217337 72 : heLysGlyAsnAlaArgThrArgLeuArgMetSerThrPheThrMetTyrValIleGl : 90 ! !:!! ! ! !!:!|||!:!:!!! ! ! !!!:!:! !:!: luValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValMe 217338 : AAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGAT : 217394 91 : yThrIleGlyLysTyrSerIleLeuIleLeuGlyGlnAspArgIleArgArgCysTrp : 109 !.!!.!!! !||||||! ! !||||||:!! !:!!! !||||||..!||| ! tAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCysVal 217395 : GGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTG : 217451 110 : LysTyrIleGluGluAspTrpArgAsnValAlaLysAlaAspAlaArgAsnMetIleL : 129 !:! ||||||..!||||||||||||||| ! ! ! ! ! !|||.!. !!!:: ArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArgGluAlaMetI 217452 : AGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGA : 217511 130 : euGluCysAlaGlyValGlyArgArgLeuAlaAlaIleCysGlyTrpPheTyrPheCy : 148 !!! ! !|||..! !!||||||!:!|||!.! !:!!||| !!::||| !:! ! leValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrSe 217512 : TAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAG : 217568 149 : sSerGlyLeuAlaGlyArgLeuLeuProLeuLeuTyrTrpGlyLysIleValAspGln : 167 !... ::: ::! ! !! !:!! ! !|||!:!|||:!!...:!! rGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGlu 217569 : CggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAG : 217625 168 : Asn<->AsnValThrValLysLeuLeuProAsnProAlaTyrLeuPheSerLeuAsnM : 186 ||| |||:!!||| !!! ! !||| ! !||| ! !!:!! !:!!:!!! AsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyrIleIleAspT 217626 : AATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATA : 217685 187 : etGlnAlaThrProValTyrGluIleMetTyrSerValGlnGlyAlaTyrGlyLeuVa : 205 !:: !||||||..! !!||||||:!!!:!! !:!!||| ! ! !||| !:! hrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLe 217686 : CTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTT : 217742 206 : lThrValSerIleThrAlaSerAlaProGlyLeuIleIleValPheValMetHisAla : 224 !! ! !.!!||||||:!!:!!||| !.!!||| !!.!|||!.!:!:|||||| uMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAla 217743 : GATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCC : 217799 225 : CysGlyGlnLeuLysIleLeuMetAsnLeuMetArgGluPheIleGluGluGlnArgG : 244 |||||||||:!!:!!:!:|||||||||! !:!!!:!.!.!!.|||!!:! ::! !. CysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgAlaA 217800 : TGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGAGCGG : 217859 245 : lnLysGlu<-><->MetAspLysLysLeuAlaAsnIleValGluHisGlnIleLysIl : 261 !.! !... :!!||| !:!:!!|||!:!||||||...!!.!!.:!!::!|| spMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnHisValArgIl 217860 : ATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGAT : 217916 262 : e : 261 | e 217917 : A : 217918 vulgar: CbirOr8 52 261 . KQ414889.1 217279 217918 + 204 M 16 48 G 0 3 M 100 300 G 0 3 M 78 234 G 0 6 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217280 217918 204 + . gene_id 9 ; sequence CbirOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217280 217918 . + . KQ414889.1 exonerate:protein2genome:local exon 217280 217918 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217280 217918 204 + . alignment_id 9 ; Query CbirOr8 ; Align 217280 53 48 ; Align 217331 69 300 ; Align 217634 169 234 ; Align 217874 247 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 198 Query range: 42 -> 246 Target range: 259847 -> 260465 43 : LysArgLeuValAspPhePhePheIlePheLeuSerPheGlyLeuIlePheAlaValL : 62 :!!!:!:!!:!!..! !!.!!.!.||||||:!!!!!!:!.!! !|||.!.!.!..!| GluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIleLeuValThrL 259848 : GAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATACTGGTCACCC : 259905 63 : euIleProGlySerLeuPheTrpValPhe<->LysGlyAsnAlaArgThrArgLeuAr : 80 |||||||| !! !||| ! !:!!.!! |||! !!:! ! !! !!:! !!: euIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrMetLysThrLy 259906 : TGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGAA : 259962 81 : g<->MetSerThrPheThrMetTyrValIleGlyThrIleGlyLysTyrSerIleLeu : 98 ! :!:.!! !!.!!||| !:: !!:!!||| !|||..! ! !!!:!:||| sValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrThrThrLeuLeu 259963 : GGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTG : 260019 99 : IleLeuGlyGlnAspArgIleArgArgCysTrpLysTyrIleGluGluAspTrpArgA : 118 :!: !|||::!||| |||! !!!!||| !:!!:!!:!:|||.!.|||||||||! LeuArgGlyArgAsp---IleLeuSerCysValGluHisValGluAsnAspTrpArgI 260020 : TTGAGAGGCAGAGAC---ATACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGAA : 260076 119 : snValAlaLysAlaAspAlaArgAsnMetIleLeuGluCysAlaGlyValGlyArgAr : 137 !:!!.!!!:!! ! ! ! !!:!|||:!!!!:|||..!! !||| ! !!|||||| leIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgTy 260077 : TTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGATA : 260133 138 : gLeuAlaAlaIleCysGlyTrpPheTyrPheCysSerGlyLeuAlaGlyArgLeuLeu : 156 !:!!|||||| !|||!.! ||| !!.!!! !|||..! ! !!|||:!! rValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCysLeuVal 260134 : CGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTC : 260190 157 : ProLeuLeuTyrTrpGlyLysIle<->ValAspGlnAsnAsnValThrValLysLeuL : 175 !!:!!||| ! ! ! !||| |||! .!..!.!.. !! !||| ! |||| ThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleValHisLeuL 260191 : ACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTGT : 260250 176 : euProAsnProAlaTyrLeuPheSerLeuAsnMetGlnAlaThrProValTyrGluIl : 194 ||||| ! !!!.!||| ! !:!!|||:!!.!.! !!:!|||:!! !!||||| euProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetAsnGluIl 260251 : TGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGAT : 260307 195 : eMetTyrSerValGlnGlyAlaTyrGlyLeuValThrValSerIleThrAlaSerAla : 213 |:!: ! !|||||| !!.!! |||!!!:!!..! !|||! !|||!.!.!! ! eValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrValGlyIle 260308 : TGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAATC : 260364 214 : ProGlyLeuIleIleValPheValMetHisAlaCysGlyGlnLeuLysIleLeuMetA : 233 !.!!||| !|||.!...! ||||||||||||||||||!!.:!:||||||. PheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMetG 260365 : TTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGG : 260424 234 : snLeuMetArgGluPheIleGluGluGlnArgGlnLysGlu : 246 !.! !!!:! !||||||:!:!!:|||..!|||.!.!:!:!! luTrpIleThrGluPheValAspGluSerArgAsnArgLys 260425 : AATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAG : 260465 vulgar: CbirOr8 42 246 . KQ414889.1 259847 260465 + 198 M 29 87 G 0 3 M 9 27 G 0 3 M 23 69 G 1 0 M 60 180 G 0 3 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259848 260465 198 + . gene_id 10 ; sequence CbirOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259848 260465 . + . KQ414889.1 exonerate:protein2genome:local exon 259848 260465 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 259848 260465 198 + . alignment_id 10 ; Query CbirOr8 ; Align 259848 43 87 ; Align 259938 72 27 ; Align 259968 81 69 ; Align 260037 105 180 ; Align 260220 165 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 186 Query range: 24 -> 243 Target range: 266661 -> 267321 25 : IleLeuAsnAlaLeuGlyIleTrpLeuSerLeuGlyLysArgLysSerIleCysLysA : 44 .!!|||!!. !!:!!||| !|||! ! !!|||..! ! !...!.!:!! :!!| PheLeuLysProIleGlyAlaTrpProProLeuSerLeuThrSerLysLeu---GluA 266662 : TTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCACATCTAAACTC---GAAC : 266716 45 : rgLeuValAspPhePhePheIlePheLeuSerPheGlyLeuIlePheAlaValLeuIl : 63 ||:!!|||..!!:! !!!.||| !!:!!!!!!:! !!! !|||.!. !..!:!!|| rgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIleLeuPheThrValIl 266717 : GAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATACTGTTCACCGTAAT : 266773 64 : eProGlySerLeuPheTrpValPheLysGlyAsnAla<->ArgThrArgLeuArgMet : 81 |||| !!! !!!! ! |||.!.:!!! !.!.::! ||||||!:!:!!!:!:!! eProCysLeuPheHisLeuValLeuGluAspGluSerIleArgThrLysValLysVal 266774 : CCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTACGAAAGTGAAGGTG : 266830 82 : SerThrPheThrMetTyrValIleGlyThrIleGlyLysTyrSerIleLeuIleLeuG : 101 ! ! ! ! !! :!! !.!!! ! ! ! !!!.|||!!!! !|||:!:||| PheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrThrThrLeuLeuLeuA 266831 : TTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACACCACACTGTTGCTAC : 266890 102 : lyGlnAspArgIleArgArgCysTrpLysTyrIleGluGluAspTrpArgAsnValAl : 120 !!... ! ..!|||||| !!||| :!!:!!!!::!! !|||||||||! !|||.! rgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValTh 266891 : GCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGATTGGAGGATCGTGAC : 266947 121 : aLysAlaAspAlaArgAsnMetIleLeuGluCysAlaGlyValGlyArgArgLeuAla : 139 !!:! !!!!:! !!:!.!.:!!!!:|||:!! !||| !!:!!|||||| !:!!||| rArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleGlyArgTyrIleAla 266948 : CAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCGGTCGTTACATTGCT : 267004 140 : AlaIleCysGlyTrpPheTyrPheCysSerGlyLeuAlaGlyArgLeuLeuProLeuL : 159 !.!!|||!.! !||| |||.!!! !|||!.! ! !!:!!:!! !! !! IlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCysValIleThrAlaP 267005 : ATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGTGATAACGGCGT : 267064 160 : euTyrTrpGlyLysIle<->ValAspGlnAsnAsnValThrValLysLeuLeuProAs : 177 !! ! ! !! :!: |||! !.!..!.!.! !! !||| ! ||||||||| heThrMetGlnThrValGluValGlyAsnGluThrArgIleValHisLeuLeuProCy 267065 : TCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTACATCTGTTGCCCTG : 267121 178 : nProAlaTyrLeuPheSerLeuAsnMetGlnAlaThrProValTyrGluIleMetTyr : 196 ! !!!.!||| ! ! !:!! :!:.!..!!!:!|||..! !!||||||:!: ! sAlaValTyrLysLysMetIleAlaValAspThrSerProThrAsnGluIleValLeu 267122 : TGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGAACGAGATTGTCCTT : 267178 197 : SerValGlnGlyAlaTyrGlyLeuValThrValSerIleThrAlaSerAlaProGlyL : 216 ! !||| !!.!! |||!!!:!!..! !|||! !..!!.!.!!||| !.!!| ValSerGlnPheValSerGlyPheIleValAsnSerSerValValGlyAlaPheSerL 267179 : GTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCGGTGCTTTCAGCC : 267238 217 : euIleIleValPheValMetHisAlaCysGlyGlnLeuLysIleLeuMetAsnLeuMe : 235 || ! !||||||!.! ||||||||||||||||||!..:!:||||||! ! !!! euAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerValLeuMetMetTrpIl 267239 : TTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTGATGATGTGGAT : 267295 236 : tArgGluPheIleGluGluGlnArg : 243 :!:!||||||:!:.!...!...||| eLysGluPheValAsnArgSerArg 267296 : CAAGGAGTTTGTGAACCGATCCAGA : 267321 vulgar: CbirOr8 24 243 . KQ414889.1 266661 267321 + 186 M 17 51 G 1 0 M 33 99 G 0 3 M 89 267 G 0 3 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266662 267321 186 + . gene_id 11 ; sequence CbirOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266662 267321 . + . KQ414889.1 exonerate:protein2genome:local exon 266662 267321 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 266662 267321 186 + . alignment_id 11 ; Query CbirOr8 ; Align 266662 25 51 ; Align 266713 43 99 ; Align 266815 76 267 ; Align 267085 165 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 182 Query range: 93 -> 267 Target range: 232690 -> 233221 94 : LysTyrSerIleLeuIleLeuGlyGlnAspArgIleArgArgCysTrpLysTyrIleG : 113 !!.|||!!! !|||:!: ! ! !:!! !|||! ! !||| !:!! ! :!:: AsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnValL 232691 : AATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGTGA : 232748 114 : luGluAspTrpArgAsnValAlaLysAlaAspAlaArgAsnMetIleLeuGluCysAl : 132 !!:!!||||||||||||||| !||| !!! ! !|||:!!:!!!!:|||:!! !|| ysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsnAl 232749 : AACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAACGC : 232805 133 : aGlyValGlyArgArgLeuAlaAlaIleCysGlyTrpPheTyrPheCysSerGlyLeu : 151 | !:!!|||||| !:!!|||..!|||..!!.!!::! ! ! !.!!! ! ! aLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValGly 232806 : GAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCGGC : 232862 152 : AlaGlyArgLeuLeuProLeuLeuTyrTrpGlyLysIle<->ValAspGlnAsnAsnV : 170 :!!! !..!:!!:!! !! !||| ! !.!!! !.!! |||! .!..!.!:! SerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSerT 232863 : TCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAGTT : 232922 171 : alThrValLysLeuLeuProAsnProAlaTyrLeuPheSerLeuAsnMetGlnAlaTh : 189 !:!!:!! ! ! !|||||| ! !! !||| ! !:!!:!!! ::! !!: yrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPheSe 232923 : ACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTCAG : 232979 190 : rProValTyrGluIleMetTyrSerValGlnGlyAlaTyrGlyLeuValThrValSer : 208 !|||..! !!|||||||||!:! !:!!||| !! !! !|||!!!:!!..! !||| rProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnSer 232980 : TCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACTCC : 233036 209 : IleThrAlaSerAlaProGlyLeuIleIleValPheValMetHisAlaCysGlyGlnL : 228 :!!|||!.!.!!||| !|||||| ! !|||.!.!.!||||||||||||||||||| ValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGlnL 233037 : GTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACAGC : 233096 229 : euLysIleLeuMetAsnLeuMetArgGluPheIleGluGluGlnArgGlnLysGlu<- : 247 ||!!.:!::!!|||::: !:!! !!!:!!.:!:!!:! !:!! !!|||:!!||| euAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGlyGlnGluGluAr 233097 : TGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAGGAGGAGAG : 233153 248 : ><->MetAspLysLysLeuAlaAsnIleValGluHisGlnIleLysIleArgSerPhe : 264 !.!.!:!||||||!.! !||||||||||||!!.:!::::! ! !!!!!:! gValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeuArgTyr 233154 : AGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTAAGGTAT : 233210 265 : LeuGluLeu : 267 |||...:!! LeuSerVal 233211 : TTGTCTGTG : 233221 vulgar: CbirOr8 93 267 . KQ414889.1 232690 233221 + 182 M 71 213 G 0 3 M 82 246 G 0 6 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232691 233221 182 + . gene_id 12 ; sequence CbirOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232691 233221 . + . KQ414889.1 exonerate:protein2genome:local exon 232691 233221 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232691 233221 182 + . alignment_id 12 ; Query CbirOr8 ; Align 232691 94 213 ; Align 232907 165 246 ; Align 233159 247 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 72 -> 240 Target range: 284694 -> 286210 73 : GlyAsnAlaArgThrArgLeuArgMetSerThrPheThrMetTyrValIleGlyThrI : 92 |||:!! ! !|||!:!:!!!:!|||! ! ! ! !! !:! !!!: !.!! GlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaA 284695 : GGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAG : 284752 93 : leGlyLysTyrSerIleLeuIleLeuGlyGlnAspArgIleArgArgCysTrpLysTy : 111 !||||||! !|||||||||! ! !! ! !!:!||| !!!:!||| !||| ! laIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAs 284753 : CGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGA : 284809 112 : rIleGluGluAsp{Tr} >>>> Target Intron 1 >>>> {p}ArgAsnVal : 119 !|||...! !|||{||} 1012 bp {|}! !::: ! pIleArgAlaAsp{Tr}++ +-{p}LeuSerHis 284810 : CATTCGTGCGGAC{TG}gt.........................ac{G}CTTTCGCAT : 285845 120 : AlaLysAlaAspAlaArgAsnMetIleLeuGluCysAlaGlyValGlyArgArgLeuA : 139 :::::: ::: |||...::::!: !!!: !!||| !!:!!|||||| !|||| SerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuA 285846 : AGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGG : 285905 140 : laAlaIleCysGlyTrpPheTyrPheCysSerGlyLeuAlaGlyArgLeuLeuProLe : 158 || !.!!|||!.! ! ||| !:!! !.!!|||!!! ! !! ! !:!! !! laIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetPr 285906 : CGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCC : 285962 159 : uLeuTyrTrpGlyLysIleValAspGlnAsnAsnValThrValLysLeuLeuProAsn : 177 !|||! ! ! !:::! ! ! ! :!!|||! !||||||!:!! !! ! !! ! oLeuCysThrValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPhe 285963 : GTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTC : 286019 178 : ProAlaTyrLeuPheSerLeuAsnMetGlnAlaThrProValTyrGluIleMetTyrS : 197 ||| !|||! ! ! !|||:!! !!::.!!!:!||| !!:!||||||:!! ! ! ProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnP 286020 : CCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAAT : 286079 198 : erValGlnGlyAlaTyrGlyLeuValThrValSerIleThrAlaSerAlaProGlyLe : 216 !:!!||| !! ! !!.!!!!|||! ! !|||:!!|||!.!.!!||| !.!!|| heMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLe 286080 : TCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTT : 286136 217 : uIleIleValPheValMetHisAlaCysGlyGlnLeuLysIleLeuMetAsnLeuMet : 235 | ! !|||||||||||||||!.!|||||||||!!!!:!||||||:!!!.. !:!! uAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeu 286137 : GGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTG : 286193 236 : ArgGluPheIleGlu : 240 !:!!.!!:!!!!: AspLysLeuValAsp 286194 : GATAAGCTCGTCGAC : 286210 vulgar: CbirOr8 72 240 . KQ414889.1 284694 286210 + 160 M 43 129 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 124 372 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284695 286210 160 + . gene_id 13 ; sequence CbirOr8 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284695 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284695 284825 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286210 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286210 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284695 286210 160 + . alignment_id 13 ; Query CbirOr8 ; Align 284695 73 129 ; Align 285839 117 372 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 342 -> 400 Target range: 305654 -> 305934 343 : LeuGluTrpTyrArgLeuSerAspLeuLysAlaArgGlnMetValLeuLeuMetIleM : 362 :!!...||||||!.!||| !! ! !! ! !!.! :!::!!|||:!!!!: !| IleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleLeuIleIleAlaM 305655 : ATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTTTAATCATTGCCA : 305712 363 : etSerAsnLysProIleLysIleThrAlaGlyLysValLeuAspLeuSerLeuLysTh : 381 |||||!:!!!.||| !||||||!:!||||||||||||:!!||||||||||||...|| etSerSerAsnProAlaLysIleSerAlaGlyLysValValAspLeuSerLeuSerTh 305713 : TGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTATCTTTATCCAC : 305769 382 : rPheGlyAsn >>>> Target Intron 1 >>>> IleIleLysAlaSerLeuA : 391 |||||||||| 106 bp :!!:!:|||.!!||||||| rPheGlyAsn++ ++ValLeuLysThrSerLeuA 305770 : ATTTGGAAACgt.........................agGTTCTGAAAACGTCATTAG : 305905 392 : laTyrLeuAsnMetLeuArgAsnValIle : 400 ||||||||!:!.!.||||||!.!..!:!! laTyrLeuSerPheLeuArgThrThrVal 305906 : CGTATTTAAGTTTCCTTCGGACTACCGTT : 305934 vulgar: CbirOr8 342 400 . KQ414889.1 305654 305934 + 157 M 42 126 5 0 2 I 0 102 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305655 305934 157 + . gene_id 14 ; sequence CbirOr8 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305655 305780 . + . KQ414889.1 exonerate:protein2genome:local exon 305655 305780 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305781 305782 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305781 305886 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305885 305886 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305887 305934 . + . KQ414889.1 exonerate:protein2genome:local exon 305887 305934 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305655 305934 157 + . alignment_id 14 ; Query CbirOr8 ; Align 305655 343 126 ; Align 305887 385 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 72 -> 240 Target range: 278747 -> 279260 73 : GlyAsnAlaArgThrArgLeuArgMetSerThrPheThrMetTyrValIleGlyThrI : 92 |||:!! ! !|||!:!:!!!:!|||! ! ! ! !! !:! !! !.!!! GlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaT 278748 : GGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAA : 278805 93 : leGlyLysTyrSerIleLeuIleLeuGlyGlnAspArgIleArgArgCysTrpLysTy : 111 !||||||! !||||||!!:! ! !! ! !!:!||| !!!:!||| !!!. ! hrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAs 278806 : CGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGA : 278862 112 : rIleGluGluAspTrpArg<-><-><->AsnValAlaLysAlaAspAlaArgAsnMet : 127 !|||... !|||||| ! ::: ! ::: ::: |||...::: pIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIle 278863 : CATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatc : 278919 128 : IleLeuGluCysAlaGlyValGlyArgArgLeuAlaAlaIleCysGlyTrpPheTyrP : 147 :!: !!!: !!||| !!:!!|||||| !|||||| !.!! !!!.! ! ||| ! MetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetT 278920 : aTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGT : 278979 148 : heCysSerGlyLeuAlaGlyArgLeuLeuProLeuLeuTyrTrpGlyLysIleValAs : 166 :!! !.!!|||:!! ! !! ! !:!! !! !|||!:! ! !:::! ! ! yrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIl 278980 : ATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGAT : 279036 167 : pGlnAsnAsnValThrValLysLeuLeuProAsnProAlaTyrLeuPheSerLeuAsn : 185 ! :!!|||! !||||||!:!! !! ! !! !||| !|||! ! ! !|||:!! eIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAsp 279037 : CATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGAT : 279093 186 : MetGlnAlaThrProValTyrGluIleMetTyrSerValGlnGlyAlaTyrGlyLeuV : 205 !!::.!!!:!||| !!:!||||||:!! ! ! !:!!||| !! ! !!.!!!!| ProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheV 279094 : CCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCG : 279153 206 : alThrValSerIleThrAlaSerAlaProGlyLeuIleIleValPheValMetHisAl : 224 || ! !|||:!!|||!.!.!!||| !.!!|||||| !|||||||||||||||!. alLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisVa 279154 : TTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGT : 279210 225 : aCysGlyGlnLeuLysIleLeuMetAsnLeuMetArgGluPheIleGlu : 240 !|||||||||!!!!:!||||||:!!!.. !:!! !:!!.!!|||!!: lCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAsp 279211 : CTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGAC : 279260 vulgar: CbirOr8 72 240 . KQ414889.1 278747 279260 + 150 M 45 135 G 0 9 M 123 369 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278748 279260 150 + . gene_id 15 ; sequence CbirOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278748 279260 . + . KQ414889.1 exonerate:protein2genome:local exon 278748 279260 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278748 279260 150 + . alignment_id 15 ; Query CbirOr8 ; Align 278748 73 135 ; Align 278892 118 369 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 341 -> 399 Target range: 301904 -> 302160 342 : GluLeuGluTrpTyrArgLeuSerAspLeuLysAlaArgGlnMetValLeuLeuMetI : 361 |||:!!!!:||||||!.!||| !!! !!:!||| !.!.:!::!!||||||! : GluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerV 301905 : GAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCG : 301962 362 : leMetSerAsnLysProIleLysIleThrAlaGlyLysValLeuAspLeuSerLeuLy : 380 !:!!:|||.!. ! ||| |||:!!||||||||||||:!!:!!||||||||||||!! alIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAs 301963 : TGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAA : 302019 381 : sThrPheGlyAsn >>>> Target Intron 1 >>>> IleIleLysAlaSerL : 390 .||||||.!!::! 82 bp :!::!:|||.!!|||: nThrPheSerSer++ ++ValValLysThrSerV 302020 : TACATTCAGCTCTgt.........................agGTGGTGAAAACATCGG : 302131 391 : euAlaTyrLeuAsnMetLeuArgAsnVal : 399 !!!.!|||||||||:!:||||||!..||| alValTyrLeuAsnLeuLeuArgThrVal 302132 : TGGTGTACTTGAATTTACTGCGAACAGTT : 302160 vulgar: CbirOr8 341 399 . KQ414889.1 301904 302160 + 136 M 43 129 5 0 2 I 0 78 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301905 302160 136 + . gene_id 16 ; sequence CbirOr8 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301905 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301905 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302160 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302160 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301905 302160 136 + . alignment_id 16 ; Query CbirOr8 ; Align 301905 342 129 ; Align 302116 385 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 343 -> 399 Target range: 235021 -> 235260 344 : GluTrpTyrArgLeuSerAspLeuLysAlaArgGlnMetValLeuLeuMetIleMetS : 363 ||||||||||||||| !! !! !! |||! ! :!!|||:!!:!!!!: !! !| GluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgS 235022 : GAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGT : 235079 364 : erAsnLysProIleLysIleThrAlaGlyLysValLeuAspLeuSerLeuLysThrPh : 382 ||!:!! ! !||||||||||||||||||||| !!|||.!.:!!|||:!! !||||| erSerMetValIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPh 235080 : CGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATT : 235136 383 : eGlyAsn >>>> Target Intron 1 >>>> IleIleLysAlaSerLeuAlaT : 392 ||||:!! 71 bp :!!.!!|||||||||!!!|||| eGlyAsp++ ++ValPheLysAlaSerPheAlaT 235137 : TGGCGATgt.........................agGTATTTAAGGCGTCTTTCGCCT : 235237 393 : yrLeuAsnMetLeuArgAsnVal : 399 ||!!!||||||:!!|||!..||| yrPheAsnMetIleArgThrVal 235238 : ACTTCAACATGATCCGCACAGTT : 235260 vulgar: CbirOr8 343 399 . KQ414889.1 235021 235260 + 135 M 41 123 5 0 2 I 0 67 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 235022 235260 135 + . gene_id 17 ; sequence CbirOr8 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 235022 235144 . + . KQ414889.1 exonerate:protein2genome:local exon 235022 235144 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 235145 235146 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 235145 235215 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 235214 235215 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 235216 235260 . + . KQ414889.1 exonerate:protein2genome:local exon 235216 235260 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 235022 235260 135 + . alignment_id 17 ; Query CbirOr8 ; Align 235022 344 123 ; Align 235216 385 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 334 -> 398 Target range: 280282 -> 280474 335 : LysThrAlaLeuMetThrCysGluLeuGluTrpTyrArgLeuSerAspLeuLysAlaA : 354 |||..!!.!:!! |||! ! !:!!!!:|||||||||||| !!! !||||||! LysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaG 280283 : AAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCAC : 280340 355 : rgGlnMetValLeuLeuMetIleMetSerAsnLysProIleLysIleThrAlaGlyLy : 373 :! :!!:!!|||:!!.!. !:!!||||||... !!||||||:!!||||||||||| lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 280341 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 280397 374 : sValLeuAspLeuSerLeuLysThrPheGlyAsnIleIleLysAlaSerLeuAlaTyr : 392 |:!!:!!||||||||||||!..!:!||| !!!:!:!:! !! !!:!|||:!!||| sIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 280398 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 280454 393 : LeuAsnMetLeuArgAsn : 398 ! !:!!:!!! ! !||| TyrHisLeuTyrAspAsn 280455 : TATCATTTGTACGATAAT : 280474 vulgar: CbirOr8 334 398 . KQ414889.1 280282 280474 + 135 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280283 280474 135 + . gene_id 18 ; sequence CbirOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280283 280474 . + . KQ414889.1 exonerate:protein2genome:local exon 280283 280474 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280283 280474 135 + . alignment_id 18 ; Query CbirOr8 ; Align 280283 335 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 335 -> 385 Target range: 206251 -> 206401 336 : ThrAlaLeuMetThrCysGluLeuGluTrpTyrArgLeuSerAspLeuLysAlaArgG : 355 ..!!.!|||! :!!||| !:!!.!.|||||||||||| !!:!! ! ! ||||||. ValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgS 206252 : GTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCT : 206309 356 : lnMetValLeuLeuMetIleMetSerAsnLysProIleLysIleThrAlaGlyLysVa : 374 ..|||:!!|||:!!!!: !||||||||| ! |||||||||:!!||||||||||||:! erMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMe 206310 : CTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAAT : 206366 375 : lLeuAspLeuSerLeuLysThrPheGlyAsnIle : 385 !!!!!!::!!|||||| !:!||| !:!!:!! tPheGluMetSerLeuAlaSerPheThrAspVal 206367 : GTTCGAAATGTCTTTAGCTAGTTTCACCGATGTA : 206401 vulgar: CbirOr8 335 385 . KQ414889.1 206251 206401 + 132 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206252 206401 132 + . gene_id 19 ; sequence CbirOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206252 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206252 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206252 206401 132 + . alignment_id 19 ; Query CbirOr8 ; Align 206252 336 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 334 -> 398 Target range: 287069 -> 287261 335 : LysThrAlaLeuMetThrCysGluLeuGluTrpTyrArgLeuSerAspLeuLysAlaA : 354 |||..!!.!||| |||! ! !:!!!!:|||||||||||| !!! !! !|||! LysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaG 287070 : AAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTC : 287127 355 : rgGlnMetValLeuLeuMetIleMetSerAsnLysProIleLysIleThrAlaGlyLy : 373 :! :!!:!!|||:!!.!. !:!!||||||... !!||||||:!!||||||||||| lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 287128 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 287184 374 : sValLeuAspLeuSerLeuLysThrPheGlyAsnIleIleLysAlaSerLeuAlaTyr : 392 |:!!:!!||||||||||||!..!:!||| !!!:!:!:! !! !!:!|||:!!||| sIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 287185 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 287241 393 : LeuAsnMetLeuArgAsn : 398 ! !:!!:!!! ||| TyrHisLeuTyrAspAsn 287242 : TATCATTTGTacgataat : 287261 vulgar: CbirOr8 334 398 . KQ414889.1 287069 287261 + 132 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287070 287261 132 + . gene_id 20 ; sequence CbirOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287070 287261 . + . KQ414889.1 exonerate:protein2genome:local exon 287070 287261 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287070 287261 132 + . alignment_id 20 ; Query CbirOr8 ; Align 287070 335 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 343 -> 396 Target range: 238661 -> 238909 344 : GluTrpTyrArgLeuSerAspLeuLysAlaArgGlnMetValLeuLeuMetIleMetS : 363 !!:|||||| !||| !!.!. !!:! !! !.!.:!::!!|||:!!!!:! ! | AspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgS 238662 : GATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGAT : 238719 364 : erAsnLysProIleLysIleThrAlaGlyLysValLeuAspLeuSerLeuLysThrPh : 382 ||||| ! !:!!|||:!!|||||||||||||||||| !!:!!|||||| ! ||||| erAsnValValValLysValThrAlaGlyLysValLeuHisMetSerLeuTyrThrPh 238720 : CGAACGTGGTCGTTAAAGTCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTT : 238776 383 : eGlyAsn >>>> Target Intron 1 >>>> IleIleLysAlaSerLeuAlaT : 392 ||||:!! 89 bp :!!:!!|||.!!.!!!!!|||| eGlyAsp++ ++ValValLysThrGlyPheAlaT 238777 : CGGCGATgt.........................agGTAGTAAAAACAGGATTCGCCT : 238895 393 : yrLeuAsnMetLeu : 396 ||:!!||||||||| yrMetAsnMetLeu 238896 : ACATGAATATGCTT : 238909 vulgar: CbirOr8 343 396 . KQ414889.1 238661 238909 + 130 M 41 123 5 0 2 I 0 85 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238662 238909 130 + . gene_id 21 ; sequence CbirOr8 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 238662 238784 . + . KQ414889.1 exonerate:protein2genome:local exon 238662 238784 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238785 238786 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238785 238873 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 238872 238873 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238874 238909 . + . KQ414889.1 exonerate:protein2genome:local exon 238874 238909 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238662 238909 130 + . alignment_id 21 ; Query CbirOr8 ; Align 238662 344 123 ; Align 238874 385 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 343 -> 396 Target range: 254307 -> 254555 344 : GluTrpTyrArgLeuSerAspLeuLysAlaArgGlnMetValLeuLeuMetIleMetS : 363 !!:|||||| !||| !!.!. !!:! !! !.!.:!::!!|||:!!!!:! ! | AspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgS 254308 : GATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGAT : 254365 364 : erAsnLysProIleLysIleThrAlaGlyLysValLeuAspLeuSerLeuLysThrPh : 382 ||||| ! !:!!:!!|||||||||||||||:::... :::|||||| ! ||||| erAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPh 254366 : CGAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTT : 254422 383 : eGlyAsn >>>> Target Intron 1 >>>> IleIleLysAlaSerLeuAlaT : 392 ||||:!! 89 bp :!!:!!|||.!!.!!!!!|||| eGlyAsp++ ++ValValLysThrGlyPheAlaT 254423 : CGGCGATgt.........................agGTAGTAAAAACAGGATTCGCCT : 254541 393 : yrLeuAsnMetLeu : 396 |||||||||||||| yrLeuAsnMetLeu 254542 : ACTTGAATATGCTT : 254555 vulgar: CbirOr8 343 396 . KQ414889.1 254307 254555 + 127 M 41 123 5 0 2 I 0 85 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254308 254555 127 + . gene_id 22 ; sequence CbirOr8 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254308 254430 . + . KQ414889.1 exonerate:protein2genome:local exon 254308 254430 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254431 254432 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254431 254519 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254518 254519 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254520 254555 . + . KQ414889.1 exonerate:protein2genome:local exon 254520 254555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254308 254555 127 + . alignment_id 22 ; Query CbirOr8 ; Align 254308 344 123 ; Align 254520 385 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 333 -> 401 Target range: 292395 -> 292599 334 : AlaLysThrAlaLeuMetThrCysGluLeuGluTrpTyrArgLeuSerAspLeuLysA : 353 ::!:!!! !|||! ! :!!! !!!: !|||||||||!.!||| !! ! !|||| SerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgArgLysA 292396 : AGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGG : 292453 354 : laArgGlnMetValLeuLeuMetIleMetSerAsnLysProIleLysIleThrAlaGl : 372 |||||.!.!!:||||||:!!:!: !!!:!!!!!. ! |||||||||:!!|||||||| laArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuThrAlaGl 292454 : CTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGG : 292510 373 : yLysValLeuAspLeuSerLeuLysThrPheGlyAsnIleIleLysAlaSerLeuAla : 391 ||||:!!!!!! !|||||||||!!.||||||||| !:!! !:!!:!!!.!|||!.! yLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSerLysLeuVal 292511 : CAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCAAAACTAGTC : 292567 392 : TyrLeuAsnMetLeuArgAsnValIleGly : 401 ! :!!:!! !|||! ||| ||| LeuIleHis***GluArgIleValAspGly 292568 : TTGATACACTAAGAACGTATAGTTGAtgga : 292599 vulgar: CbirOr8 333 401 . KQ414889.1 292395 292599 + 124 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292396 292599 124 + . gene_id 23 ; sequence CbirOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292396 292599 . + . KQ414889.1 exonerate:protein2genome:local exon 292396 292599 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292396 292599 124 + . alignment_id 23 ; Query CbirOr8 ; Align 292396 334 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 296 -> 397 Target range: 272836 -> 273293 297 : GluTrpAsnAsnSerAsnSerMetValMetIleProTyrThrIleValCysSerSerA : 316 ||||||!.!:!! !:!!! !..! !:!:! ! !!||| !!!::!! !! !||| GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 317 : laIleIleSerMetPheIleValCysTyrThrGlyAsnGlnLeuIleLeuGln >>> : 334 ...::::::|||||||||||||||! !|||.!. !|||! !::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 335 : > Target Intron 1 >>>> AlaLysThrAlaLeuMetThrCysGluLeuGluT : 345 73 bp ||| ... !:!:..!! ! ! !.!.| --LysLysIleGlyGluValValTyrMetThrAsnT 272951 : ......................gtaaaaaaattggcGAGGTAGTTTACATGACGAACT : 273054 346 : rpTyrArgLeuSerAspLeuLysAlaArgGlnMetValLeuLeuMetIleMetSerAs : 364 ||||| !||| !!! ! ! ! !! !.!.:!!:!!|||:!!!!: !! !!!!: rpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCysSe 273055 : GGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATGCAG : 273111 365 : nLysProIleLysIleThrAlaGlyLysValLeuAspLeuSerLeuLysThrPheGly : 383 ! !||||||||||||||||||!:!:!!:!! !:!!|||:!! ! ||||||||| rValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPheGly 273112 : TGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTCGGC : 273168 384 : Asn >>>> Target Intron 2 >>>> IleIleLysAlaSerLeuAlaTyrLe : 393 :!! 81 bp :::!!:|||::!:!!!!!|||||||| Asp++ ++ValMetLysSerAlaPheAlaTyrLe 273169 : GATgt.........................aggtGATGAAAAGTGCGTTCGCGTACTT : 273279 394 : uAsnMetLeuArg : 397 ||||||||||||| uAsnMetLeuArg 273280 : AAATATGCTACGA : 273293 vulgar: CbirOr8 296 397 . KQ414889.1 272836 273293 + 115 M 37 111 5 0 2 I 0 69 3 0 2 M 51 153 5 0 2 I 0 77 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273293 115 + . gene_id 24 ; sequence CbirOr8 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273020 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273019 273020 . + . intron_id 0 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local cds 273021 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273021 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273293 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273293 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273293 115 + . alignment_id 24 ; Query CbirOr8 ; Align 272837 297 111 ; Align 273021 334 153 ; Align 273255 385 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 334 -> 385 Target range: 219518 -> 219671 335 : LysThrAlaLeuMetThrCysGluLeuGluTrpTyrArgLeuSerAspLeuLysAlaA : 354 ||| ... |||:!!! ! !:!!|||||||||||||||!!!! !||| !! LysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysLysL 219519 : aaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAAAGC : 219576 355 : rgGlnMetValLeuLeuMetIleMetSerAsnLysProIleLysIleThrAlaGlyLy : 373 ! !! |||||| !!!: !|||||||||... !!||||||:!:|||||||||!! euTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAs 219577 : TCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGGAAA : 219633 374 : sValLeuAspLeuSerLeuLysThrPheGlyAsnIle : 385 .:!!:!!!!:||||||:!!!..|||||| !:!!:!: nMetValGluLeuSerIleSerThrPheThrAspVal 219634 : TATGGTCGAATTGTCTATCAGCACTTTTACCGACGTG : 219671 vulgar: CbirOr8 334 385 . KQ414889.1 219518 219671 + 108 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219519 219671 108 + . gene_id 25 ; sequence CbirOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219519 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219519 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219519 219671 108 + . alignment_id 25 ; Query CbirOr8 ; Align 219519 335 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 334 -> 398 Target range: 214869 -> 215061 335 : LysThrAlaLeuMetThrCysGluLeuGluTrpTyrArgLeuSerAspLeuLysAlaA : 354 |||..!!.! !:!::!!! ! !:!!||||||||||||||| !!! ! !||| !! LysValGlyGluValSerTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysL 214870 : AAGGTCGGAGAAGTATCGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGC : 214927 355 : rgGlnMetValLeuLeuMetIleMetSerAsnLysProIleLysIleThrAlaGlyLy : 373 ! :!!|||:!!||| !|||||||||..! !!:!!|||.!!|||||||||!! euCysCysIleLeuIleMetAlaMetSerAsnSerSerValLysPheThrAlaGlyAs 214928 : TCTGTTGCATTTTGATCATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAA : 214984 374 : sValLeuAspLeuSerLeuLysThrPheGlyAsnIleIleLysAlaSerLeuAlaTyr : 392 .:!!:!!!!:||||||:!!!..||||||.!!!:!:!!! !! !..!||| !!! nMetValGluLeuSerIleSerThrPheSerSerValSerIleLysGlnLeuProLeu 214985 : CATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTAAGTATCAAACAACTTCCATTA : 215041 393 : LeuAsnMetLeuArgAsn : 398 ! ...:::... ||| TyrThrIlePheThrAsn 215042 : Tacacaattttcacaaat : 215061 vulgar: CbirOr8 334 398 . KQ414889.1 214869 215061 + 107 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214870 215061 107 + . gene_id 26 ; sequence CbirOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214870 215061 . + . KQ414889.1 exonerate:protein2genome:local exon 214870 215061 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214870 215061 107 + . alignment_id 26 ; Query CbirOr8 ; Align 214870 335 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 334 -> 385 Target range: 224505 -> 224658 335 : LysThrAlaLeuMetThrCysGluLeuGluTrpTyrArgLeuSerAspLeuLysAlaA : 354 ||| ... !:!!:!!! ! !:!!!!:||||||||||||!!!! !||| !! LysIleGlyGlnValSerTyrMetIleAspTrpTyrArgLeuThrGlyAsnLysLysL 224506 : aaaattggacaAGTGTCGTACATGATCGACTGGTATCGGTTGACTGGAAATAAGAAAC : 224563 355 : rgGlnMetValLeuLeuMetIleMetSerAsnLysProIleLysIleThrAlaGlyLy : 373 ! :!!|||:!!!!: |||||||||... !!||||||:!:|||||||||!! euCysCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAs 224564 : TATGCTGCATTCTGATAATCGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGAAA : 224620 374 : sValLeuAspLeuSerLeuLysThrPheGlyAsnIle : 385 .:!!:!!!!:|||!!!|||! |||||||||:!!:!! nMetValGluLeuCysLeuThrThrPheGlyAspVal 224621 : CATGGTCGAACTGTGTCTAACCACTTTCGGTGACGTA : 224658 vulgar: CbirOr8 334 385 . KQ414889.1 224505 224658 + 106 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224506 224658 106 + . gene_id 27 ; sequence CbirOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224506 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224506 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224506 224658 106 + . alignment_id 27 ; Query CbirOr8 ; Align 224506 335 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 343 -> 400 Target range: 264759 -> 265010 344 : GluTrpTyrArgLeuSerAspLeuLysAlaArgGlnMetValLeuLeuMetIleMetS : 363 .!.|||||| !||| !! !! ! ! !! !.!.:!!:!!|||:!!!!::!!! | AsnTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLeuIleIleLeuArgS 264760 : AATTGGTATTACTTACCCTACAAAGATATCCTTGATCTGATTCTCATCATTTTAAGAT : 264817 364 : erAsnLysProIleLysIleThrAlaGlyLysValLeuAspLeuSerLeuLysThrPh : 382 ||!:! ! !.!!|||.!!||||||||||||:!!||| !!:!!|||:!! ! ||||| erSerValValPheLysPheThrAlaGlyLysIleLeuHisMetSerMetTyrThrPh 264818 : CCAGCGTGGTGTTTAAATTCACCGCTGGAAAGATACTTCACATGTCCATGTACACATT : 264874 383 : eGlyAsn >>>> Target Intron 1 >>>> IleIleLysAlaSerLeuAlaT : 392 |.!!:!! 80 bp :!!||||||:!!|||!!!.!!| eSerAsp++ ++ValIleLysSerSerPheThrT 264875 : CAGTGACgt.........................aggTAATCAAATCCTCTTTCACGT : 264984 393 : yrLeuAsnMetLeuArgAsnValIle : 400 ||||||||:!:||||||.!...!!!: yrLeuAsnLeuLeuArgGlnThrMet 264985 : ACTTAAACTTACTTCGCCAAACGATG : 265010 vulgar: CbirOr8 343 400 . KQ414889.1 264759 265010 + 106 M 41 123 5 0 2 I 0 76 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264760 265010 106 + . gene_id 28 ; sequence CbirOr8 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264760 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264760 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265010 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265010 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264760 265010 106 + . alignment_id 28 ; Query CbirOr8 ; Align 264760 344 123 ; Align 264963 385 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 343 -> 390 Target range: 244691 -> 244832 344 : GluTrpTyrArgLeuSerAspLeuLysAlaArgGlnMetValLeuLeuMetIleMetS : 363 !!:|||||| !||| !!.!. !!:! !! !.!.:!::!!|||:!!!!:! ! | AspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgS 244692 : GATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGAT : 244749 364 : erAsnLysProIleLysIleThrAlaGlyLysValLeuAspLeuSerLeuLysThrPh : 382 |||||! ! !:!!:!!||||||||||||||||||||| !!:!!|||||| ! ||||| erAsnMetValValGluIleThrAlaGlyLysValLeuHisMetSerLeuTyrThrPh 244750 : CGAACATGGTCGTTGAAATCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTT : 244806 383 : eGlyAsnIleIleLysAlaSerLeu : 390 ||||:!!:!!! !:!!.!!!.!||| eGlyAspValSerGluThrLysLeu 244807 : CGGCGATGTAAGTGAAACTAAACTT : 244832 vulgar: CbirOr8 343 390 . KQ414889.1 244691 244832 + 100 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244692 244832 100 + . gene_id 29 ; sequence CbirOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244692 244832 . + . KQ414889.1 exonerate:protein2genome:local exon 244692 244832 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244692 244832 100 + . alignment_id 29 ; Query CbirOr8 ; Align 244692 344 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 663 Query range: 8 -> 404 Target range: 278549 -> 280551 9 : AsnSerAsnTyrGluAsnAspIleArgTyrThrValGlnValHisArgLeuIleLeuS : 28 :!!|||!..!::.!.!..||| ! !|||!:!||||||:!!:!!|||! !.!!|||! AspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuL 278550 : GATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCA : 278607 29 : erLeuIleGlyValTrpProIleLeuLysLysSerArgTyrArgGlnThrLeuValLy : 47 .!! !|||||||||||||||:!! ! !! ! ! !:!!! !:!! !.. ysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSe 278608 : AACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTC : 278664 48 : sGlyValIleLysIleValCysCysPheLeuLeuSerPheAsnLeuIleProTrpAla : 66 .! !|||:!! !:!!:!! !!|||||||||:!!.!!||| !|||:!!|||!! ||| rValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAla 278665 : CGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCT : 278721 67 : LeuTyrMetPheLeu<->IleValAspThrLeuThrGlyArgLeuLysMetLeuGlyA : 85 |||! !! ! ||| ! !..!! ! !||| ! !!:!:!!||||||:!!||| LeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyP 278722 : CTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTC : 278781 86 : laLeuCysPheTyrSerMetValProAlaMetTyrTyrAlaLeuMetLeuArgGluAs : 104 !!||| !!|||! !!!!|||!.! !! !! |||||| !||||||! !|||! ! roLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGl 278782 : CTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGG : 278838 105 : pArgIleLysGluCysValArgHisValGluGluAspTrpArg<-><-><->AsnVal : 120 !!:!||| :!!||||||!.! !!:!!... !|||||| ! ::: ! yLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyr 278839 : CAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTAT : 278895 121 : ArgAspValAsnAspArgArgIleMetLeuAspAsnAlaArgAlaGlyArgPheIleL : 140 |||... ...:::|||...|||||| !|||!:!|||||| !||||||! !:!: ArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuA 278896 : CGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGG : 278955 141 : euIleTyrAlaThrLeuPheLeuPheThrSerGlyPheIleTyrArgLeuIleGlnPr : 159 !|||!:!::!.!! !|||:!!!:!:!!.!!||| !!.!!|||! ! !:!:..!|| laIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetPr 278956 : CGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCC : 279012 160 : oIleAlaArgGlyLysThr<->ValIleGlyAsnIleThrIleArgProLeuValGln : 177 |:!: ! !! !:::||| :!!|||! !||| !|||:!:||| !!! !!.! oLeuPheAlaValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPhe 279013 : GTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTC : 279069 178 : GlyAsnTyrTyrIlePhePheAspProGlnGlnSerProAlaTyrGluIleValPheS : 197 !! !||| ! !.!!.!!||||||!:: ||||||:!!!:!||||||||| ! ProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnP 279070 : CCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAAT : 279129 198 : erLeuHisLeuLeuThrGlyIleIleIleTyrAlaValMetAlaAlaValCysGlyIl : 216 !:!!!!.! !|||.!!!.!.!!:!!:!!|||:!!|||! !.!!.!!.!|||.!!:! heMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLe 279130 : TCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTT : 279186 217 : eAlaAlaLeuPheThrMetHisAlaCysGlyGlnLeuGluMetLeuAlaAlaTrpLeu : 235 : !|||:!!|||..!||||||!.!|||||||||!!!..!!!:|||!.!.!! !||| uIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeu 279187 : GATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTG : 279243 236 : GluAsnLeu<->SerAsnGluAspGlnArgProArgAspCysThrSerAlaGlnLysL : 254 !!:!!.||| ..!...! ! ! !||| !!!! !!||| !! !|||::!| AspLysLeuIleAspGlyValLysGlyArgLysSerLeuSerThrHisGluGlnArgL 279244 : GATAAGCTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGAC : 279303 255 : euAlaMetIleIleMetHisHisValArgIleArg{Ly} >>>> Target Intro : 266 ||!.! |||||| !||||||:!!!:!|||! !{ } 571 bp euGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 279304 : TGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt................. : 279343 267 : n 1 >>>> {s}PheValAspArgIleGlnAspIleIleGlyGlyMetCysPheIle : 281 { }|||:!!...!:!|||:!!! :!!:!:..!! !!!:||||||:!! ++{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheVal 279344 : ........ag{T}TTTATATCGCAAATCGAGGGGCTCCTGAACGAAATATGTTTCGTC : 279955 282 : GluIleIleAspSerThrLeuIleLeuCysLeuLeuGlyTyrTyrValIleThr >> : 300 |||:!:|||! !!!!||||||! !:!!|||!!!||| !||||||:!!:!!||| GluValIleGlyCysThrLeuAsnIleCysPheLeuThrTyrTyrLeuLeuThr++ 279956 : GAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGACATATTATTTACTCACGgt.. : 280014 301 : >> Target Intron 2 >>>> GlyTrpGluArgAsnAspAlaLeuSerSerLeu : 310 80 bp ! !||||||!:!|||||||||:!!.!!!!!!!! ++GluTrpGluGlnAsnAspAlaIleGlyThrPhe 280015 : .......................agGAATGGGAGCAAAATGACGCTATAGGAACGTTC : 280122 311 : ThrTyrPheIleMetLeuIleSerPheThrPheAsnIlePheIleLeuCysTyrIleG : 330 ||||||!!.!!:.!.|||||||||!!.|||||||||:!!||||||||||||||||||| ThrTyrLeuMetPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleG 280123 : ACGTATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCG : 280182 331 : lyAspAlaLeuSerThrGln >>>> Target Intron 3 >>>> GlySerLys : 339 ||!!: !|||||| !||| 74 bp !!! !||| lyGluIleLeuSerGluGln++ ++CysLeuLys 280183 : GTGAAATTCTCTCCGAACaggt.........................agTGCTTAAAA : 280283 340 : ValHisThrThrSerCysThrIleAspTrpTyrCysLeuSerAsnLysGluAlaArgT : 359 ||| !..!:!!!!!! !! !|||||||||||| !!||| !!...|||:!!|||!:! ValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnG 280284 : GTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAG : 280343 360 : yrLeuIleLeuIleIleAlaThrAlaSerHisProThrLysLeuThrProGlyLysVa : 378 !||||||||||||.!!|||..!:!!!:! ! !!! !||||||||| !!||||||:! lyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIl 280344 : GTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGAT : 280400 379 : lMetAspLeuSerPheSerSerPheGlyThr >>>> Target Intron 4 >>>> : 389 !!!:|||||||||!!.||||||||| !!!:! 71 bp eIleAspLeuSerLeuSerSerPheCysSer++ 280401 : CATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt......................... : 280435 390 : IleValArgThrAlaMetThrTyrLeuAsnLeuLeuArgThrValThr : 404 :!::!!!:!||||||.!..!!||||||!:!||||||||||||:!!||| ++ValLeuLysThrAlaPheAlaTyrLeuSerLeuLeuArgThrLeuThr 280436 : agGTGTTAAAAACGGCATTCGCATATCTGAGCTTATTACGTACGCTTACC : 280551 vulgar: CbirOr13 8 404 . KQ414889.1 278549 280551 + 663 M 63 189 G 0 3 M 47 141 G 0 9 M 47 141 G 0 3 M 73 219 G 0 3 M 27 81 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278550 280551 663 + . gene_id 1 ; sequence CbirOr13 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278550 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278550 279340 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280551 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278550 280551 663 + . alignment_id 1 ; Query CbirOr13 ; Align 278550 9 189 ; Align 278742 72 141 ; Align 278892 119 141 ; Align 279036 166 219 ; Align 279258 239 81 ; Align 279913 267 99 ; Align 280092 300 111 ; Align 280277 337 156 ; Align 280504 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 658 Query range: 8 -> 404 Target range: 284496 -> 287338 9 : AsnSerAsnTyrGluAsnAspIleArgTyrThrValGlnValHisArgLeuIleLeuS : 28 :!!|||!..!::!!:!..||| ! !|||!:!||||||:!!:!!|||! !.!!|||! AspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuL 284497 : GATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCA : 284554 29 : erLeuIleGlyValTrpProIleLeuLysLysSerArgTyrArgGlnThrLeuValLy : 47 .!! !|||||||||||||||:!! ! !! ! ! !:!!! !:!! !.. ysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSe 284555 : AACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTC : 284611 48 : sGlyValIleLysIleValCysCysPheLeuLeuSerPheAsnLeuIleProTrpAla : 66 .! !|||:!! !:!!:!! !!|||||||||:!!.!!||| !|||:!!|||!! ||| rValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAla 284612 : CGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCT : 284668 67 : LeuTyrMetPheLeu<->IleValAspThrLeuThrGlyArgLeuLysMetLeuGlyA : 85 |||! !! ! ||| ! !..!! ! !||| ! !!:!:!!||||||:!!||| LeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyP 284669 : CTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTC : 284728 86 : laLeuCysPheTyrSerMetValProAlaMetTyrTyrAlaLeuMetLeuArgGluAs : 104 !!||| !!|||! !! !|||!.! !! !! !|||||| !|||!!:! !|||! ! roLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGl 284729 : CTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGG : 284785 105 : pArgIleLysGluCysValArgHisValGluGluAsp{Tr} >>>> Target Int : 117 !!:!||| :!!||||||!:! !!:!!...! !|||{||} 1012 b yLysIleGlyGlnCysValLysAspIleArgAlaAsp{Tr}++ 284786 : CAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGAC{TG}gt............... : 284828 118 : ron 1 >>>> {p}ArgAsnValArgAspValAsnAspArgArgIleMetLeuAspA : 132 p {|}! !::: !!! ... ...:::|||...|||||| !|||! +-{p}LeuSerHisSerGlnGluGluGluArgGluIleMetArgAspS 284829 : ..........ac{G}CTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACA : 285881 133 : snAlaArgAlaGlyArgPheIleLeuIleTyrAlaThrLeuPheLeuPheThrSerGl : 151 :!|||||| !||||||! !:!: !|||!:!..!.!! !|||:!!!:!:!!.!!|| erAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGl 285882 : GCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGG : 285938 152 : yPheIleTyrArgLeuIleGlnProIleAlaArgGlyLysThr<->ValIleGlyAsn : 169 ||||.!!|||! ! !:!:..!|||:!:..!! !! !:::||| :!!|||! !||| yPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIleAspAsn 285939 : ATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAAC : 285995 170 : IleThrIleArgProLeuValGlnGlyAsnTyrTyrIlePhePheAspProGlnGlnS : 189 |||:!:||| !!! !!.! !! !||| ! !.!!.!!||||||!:: | GluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrS 285996 : GAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCA : 286055 190 : erProAlaTyrGluIleValPheSerLeuHisLeuLeuThrGlyIleIleIleTyrAl : 208 |||||:!!!:!||||||||| ! !:!!!!.! !|||.!!!.!.!!:!!||||||:! erProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSe 286056 : GCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTC : 286112 209 : aValMetAlaAlaValCysGlyIleAlaAlaLeuPheThrMetHisAlaCysGlyGln : 227 !|||! !.!!.!!.!|||.!!:!:||||||:!!|||..!||||||!.!||||||||| rValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGlyGln 286113 : GGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAA : 286169 228 : LeuGluMetLeuAlaAlaTrpLeuGluAsnLeu<->SerAsnGluAspGlnArgProA : 246 !!!..!!!:|||!.!.!! !|||!!:!!.||| ..!...! ! ! !||| ! PheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLysGlyArgLysG 286170 : TTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGAGGAAGG : 286229 247 : rgAspCysThrSerAlaGlnLysLeuAlaMetIleIleMetHisHisValArgIleAr : 265 !! !!||| !! !|||::!|||!.! |||||| !||||||:!!!:!|||! lyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLe 286230 : GGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACT : 286286 266 : g{Ly} >>>> Target Intron 2 >>>> {s}PheValAspArgIleGlnAsp : 273 !{ } 408 bp { }|||:!!...!:!|||:!!! u{Gl}++ ++{y}PheIleSerGlnIleGluGly 286287 : G{GG}gt.........................ag{T}TTTATATCGCAAATCGAGGGG : 286718 274 : IleIleGlyGlyMetCysPheIleGluIleIleAspSerThrLeuIleLeuCysLeuL : 293 :!!:!!..!! !!!:||||||:!!|||:!:|||! !!!!||||||! !:!!|||!!!| LeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsnIleCysPheL 286719 : CTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTT : 286778 294 : euGlyTyrTyrValIleThr >>>> Target Intron 3 >>>> GlyTrpGlu : 302 |||||||||||:!!:!:||| 80 bp ! !|||||| euGlyTyrTyrLeuLeuThr++ ++GluTrpGlu 286779 : TGGGATATTATTTACTGACGgt.........................agGAATGGGAG : 286885 303 : ArgAsnAspAlaLeuSerSerLeuThrTyrPheIleMetLeuIleSerPheThrPheA : 322 !:!!:!!!:.!!:!!.!!!!!:!!||||||! !! :!!|||:!!||||||||||||| GlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerPheThrPheA 286886 : CAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCACGTTCA : 286945 323 : snIlePheIleLeuCysTyrIleGlyAspAlaLeuSerThrGln >>>> Target : 337 ||:!!|||||||||||||||||||||!!: !|||||| !||| 74 snValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286946 : ACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt............ : 286992 338 : Intron 4 >>>> GlySerLysValHisThrThrSerCysThrIleAspTrpTyrC : 351 bp !!! !|||||| ! !:!!!!!! !! !|||||||||||| ++CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrA 286993 : .............agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATC : 287106 352 : ysLeuSerAsnLysGluAlaArgTyrLeuIleLeuIleIleAlaThrAlaSerHisPr : 370 !!||| !!...||| !|||!:! !||||||||||||.!!|||..!:!!!:! ! ! rgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSe 287107 : GTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTC : 287163 371 : oThrLysLeuThrProGlyLysValMetAspLeuSerPheSerSerPheGlyThr > : 389 !! !||||||||| !!||||||:!!!!:|||||||||!!.||||||||| !!!:! rIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSer++ 287164 : CATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt. : 287222 390 : >>> Target Intron 5 >>>> IleValArgThrAlaMetThrTyrLeuAsnLe : 399 71 bp :!::!!!:!:!!|||.!..!!||||||!:!|| ++ValLeuLysSerAlaPheAlaTyrLeuSerLe 287223 : ........................agGTGTTGAAATCGGCATTCGCATATCTGAGCTT : 287321 400 : uLeuArgThrValThr : 404 ||||||||||:!!||| uLeuArgThrLeuThr 287322 : ATTACGTACGCTAACC : 287338 vulgar: CbirOr13 8 404 . KQ414889.1 284496 287338 + 658 M 63 189 G 0 3 M 45 135 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 48 144 G 0 3 M 73 219 G 0 3 M 27 81 S 0 2 5 0 2 I 0 404 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284497 287338 658 + . gene_id 2 ; sequence CbirOr13 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284497 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284497 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286698 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 4 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 3 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287220 287221 . + . intron_id 5 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 287220 287290 . + . intron_id 5 KQ414889.1 exonerate:protein2genome:local splice3 287289 287290 . + . intron_id 4 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 287291 287338 . + . KQ414889.1 exonerate:protein2genome:local exon 287291 287338 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284497 287338 658 + . alignment_id 2 ; Query CbirOr13 ; Align 284497 9 189 ; Align 284689 72 135 ; Align 285839 118 144 ; Align 285986 166 219 ; Align 286208 239 81 ; Align 286700 267 99 ; Align 286879 300 111 ; Align 287064 337 156 ; Align 287291 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 625 Query range: 8 -> 389 Target range: 303169 -> 305783 9 : AsnSerAsnTyrGluAsnAspIleArgTyrThrValGlnValHisArgLeuIleLeuS : 28 |||! !||||||:!!!!.|||||| !|||..!..!:!! ! !!:!! !||||||! AsnLeuAsnTyrLysLysAspIleValTyrValThrLysHisSerLysTrpIleLeuL 303170 : AATTTGAATTACAAGAAAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCCTGA : 303227 29 : erLeuIleGlyValTrpProIleLeuLysLysSerArgTyrArgGlnThrLeuValLy : 47 .!! !:!!|||:!!|||||| !:!! !..!..! ! ! ! !||| !|| ysSerLeuGlyIleTrpProAlaVal---LeuAspGluThrAlaGlyPheLeuProLy 303228 : AGTCCCTTGGTATTTGGCCAGCCGTG---TTGGACGAAACCGCAGGATTCCTACCAAA : 303281 48 : sGlyValIleLysIleValCysCysPheLeuLeuSerPheAsnLeuIleProTrpAla : 66 | !..!||| !:!! ! !! !!|||||| |||!.!:!!||||||!! ! sIleThrIleGlyLeuSerAsnLeuValLeuLeu---PheThrValIleProCysIle 303282 : AATCACCATTGGACTCAGTAATTTGGTTCTATTA---TTCACCGTGATACCGTGTATT : 303335 67 : LeuTyrMetPheLeuIleValAspThrLeuThrGlyArgLeuLysMetLeuGlyAlaL : 86 |||:!!!!:.!.!!! ! ! ! ! !! ! !|||||||||:!:!!!||| !| LeuHisIleIlePheGluGlnLysAspThrIleIleArgLeuLysLeuPheGlyLeuL 303336 : CTACACATAATATTCGAACAAAAGGATACGATAATAAGATTGAAACTATTCGGTCTGC : 303395 87 : euCysPheTyrSerMetValProAlaMetTyrTyrAlaLeuMetLeuArgGluAspAr : 105 || !!|||! !! !!!: ! ! !! !|||!::|||||| !|||:!! || euSerPheCysLeuIleSerLeuMetLysTyrTrpAlaLeuAlaThrArgLysProAr 303396 : TGAGTTTCTGTTTGATCTCGTTGATGAAGTATTGGGCCCTCGCCACGCGGAAACCAAG : 303452 106 : gIleLysGluCysValArgHisValGluGluAspTrpArgAsn >>>> Target I : 120 |||||||||||||:!!..!.!.|||:!!...||||||!:!.!. 938 gIleLysGluCysIleGluGluValGlnSerAspTrpLysGlu++ 303453 : GATCAAAGAATGTATAGAAGAGGTGCAAAGTGATTGGAAAGAGgt............. : 303499 121 : ntron 1 >>>> ValArgAspValAsnAspArgArgIleMetLeuAspAsnAlaAr : 134 bp |||..!..!:!!!..||||||..!!!:|||||| ! !!!.!!: ++ValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGl 303500 : ............agGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCA : 304477 135 : gAlaGlyArgPheIleLeuIleTyrAlaThrLeuPheLeuPheThrSerGlyPheIle : 153 ! !|||||| !:!: !||| !..!.!!:!!|||:!!!:!|||.!!||| !||| nMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIle 304478 : AATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATT : 304534 154 : TyrArgLeuIleGlnProIleAlaArgGlyLysThrValIleGly<->AsnIleThrI : 172 |||!.! !:!!..!! !.!!|||! !|||! ! !||| !! ! ||| !|||| TyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgThrI 304535 : TATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTACGA : 304594 173 : leArgProLeuValGlnGlyAsnTyrTyrIlePhePheAspProGlnGlnSerProAl : 191 ||!:!||||||||| ! !!.!||| ! !!!.|||||| !||| !|||||| leLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIl 304595 : TTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTAT : 304651 192 : aTyrGluIleValPheSerLeuHisLeuLeuThrGlyIleIleIleTyrAlaValMet : 210 !||||||:!:|||!:!! !:!!|||! !:!! !||| !:!!||||||:!!:!!! eTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThr 304652 : TTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACC : 304708 211 : AlaAlaValCysGlyIleAlaAlaLeuPheThrMetHisAlaCysGlyGlnLeuGluM : 230 |||!.!!.!||||||:!!||||||||||||.!!! |||||||||||||||:!!!!:! AlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspI 304709 : GCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATA : 304768 231 : etLeuAlaAlaTrpLeuGluAsnLeuSerAsnGluAspGlnArgProArgAspCysTh : 249 !::!! !:!! ! |||! :!!||| !|||... ! :!! ...! ! leValMetSerArgLeuGlyAspLeuValAsnSerLysGlu---------SerSerAs 304769 : TCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAA---------TCATCTGA : 304816 250 : rSerAlaGlnLysLeuAlaMetIleIleMetHisHisValArgIleArg{Ly} >>> : 266 !! !! !:!!::!||| ! |||:!! !||||||:!!|||||| !{!:} pLeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIleLeu{Ar}++ 304817 : TTTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTA{AG}gt... : 304871 267 : > Target Intron 2 >>>> {s}PheValAspArgIleGlnAspIleIleGlyG : 277 70 bp {!}||| !! ! !:!:||| :!::!: !! ++{g}PheSerAlaIleValGlnThrValLeuGlnG 304872 : ......................ag{A}TTCTCGGCAATAGTGCAAACAGTGTTGCAAG : 304970 278 : lyMetCysPheIleGluIleIleAspSerThrLeuIleLeuCysLeuLeuGlyTyrTy : 296 !:!:||||||:!:|||.!!|||! !|||||||||:!::!!|||||||||! !||||| luValCysPheLeuGluPheIleGlySerThrLeuLeuIleCysLeuLeuGluTyrTy 304971 : AAGTATGCTTCTTGGAATTCATTGGTTCTACCTTACTGATATGTCTACTTGAATACTA : 305027 297 : rValIleThr >>>> Target Intron 3 >>>> GlyTrpGluArgAsnAspA : 306 | !|||||| 62 bp ! !||||||!!!!:!:!!. rCysIleThr++ ++AspTrpGluSerSerAsnT 305028 : CTGTATAACGgt.........................agGATTGGGAGAGCAGTAATA : 305119 307 : laLeuSerSerLeuThrTyrPheIleMetLeuIleSerPheThrPheAsnIlePheIl : 325 !!:!!||| ! !|||||| :!::!:||||||||| ! ||||||||||||||||| hrValSerLeuThrThrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIl 305120 : CCGTTAGTCTTACAACATATACAGTGTTACTGATATCTGTAACATTTAATATATTCAT : 305176 326 : eLeuCysTyrIleGlyAspAlaLeuSerThrGln >>>> Target Intron 4 > : 337 ||||||||||||||||!!: !|||! ! !:!! 413 bp eLeuCysTyrIleGlyGluIleLeuMetGluLys++ 305177 : ATTATGCTACATTGGTGAGATTCTTATGGAAAAGgt...................... : 305214 338 : >>> GlySerLysValHisThrThrSerCysThrIleAspTrpTyrCysLeuSerAs : 354 .!!|||!..||| !:!!!!!! !! !|||..!|||||| !||| !!!. ++SerSerSerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProTh 305215 : ...agAGCAGTAGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGAC : 305676 355 : nLysGluAlaArgTyrLeuIleLeuIleIleAlaThrAlaSerHisProThrLysLeu : 373 !||| ! !!.! !||||||||||||||||||! !:!!|||:!!|||.!!|||:!! rLysThrIleHisGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIle 305677 : TAAGACGATACATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATC : 305733 374 : ThrProGlyLysValMetAspLeuSerPheSerSerPheGlyThrIle : 389 !:! !!|||||||||:!:|||||||||!!.|||!!!||||||!.!:!: SerAlaGlyLysValValAspLeuSerLeuSerThrPheGlyAsnVal 305734 : AGTGCTGGTAAAGTAGTTGATTTATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: CbirOr13 8 389 . KQ414889.1 303169 305783 + 625 M 28 84 G 1 0 M 21 63 G 1 0 M 60 180 5 0 2 I 0 934 3 0 2 M 49 147 G 0 3 M 75 225 G 3 0 M 19 57 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 37 111 5 0 2 I 0 409 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303170 305783 625 + . gene_id 3 ; sequence CbirOr13 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303170 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303170 303496 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304868 . + . insertions 3 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 2 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303170 305783 625 + . alignment_id 3 ; Query CbirOr13 ; Align 303170 9 84 ; Align 303254 38 63 ; Align 303317 60 180 ; Align 304435 120 147 ; Align 304585 169 225 ; Align 304810 247 57 ; Align 304940 267 99 ; Align 305101 300 111 ; Align 305625 337 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 556 Query range: 2 -> 336 Target range: 217129 -> 219439 3 : GluArgAlaAspLeuCysAsnSerAsnTyrGluAsnAspIleArgTyrThrValGlnV : 22 |||!:!:!! ! ! !:!!! !.!.||||||...:::|||... ::!:!!||| GluGlnSerProArgThrAspTyrGluTyrGluLysAsnIleAsnLeuSerIleGlnT 217130 : GAACAATCCCCCAGAACCGACTACGAgtacgagaaaaatataaatctcaGTATCCAAT : 217187 23 : alHisArgLeuIleLeuSerLeuIleGlyValTrpProIleLeuLysLysSerArgTy : 41 !:!!|||! !:!:|||!.!! !!!:|||:!!||||||! !! !:::! !!!! ! rpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnSerArgThrThrThrAr 217188 : GGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACTCACGTACCACCACCAG : 217244 42 : rArgGlnThrLeuValLysGlyValIleLysIleValCysCysPheLeuLeuSerPhe : 60 !!:!! !:!!:!! ! !:!!|||!!. !:!!|||! ! !|||:!!|||||| gSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPhe 217245 : ATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTT : 217301 61 : AsnLeuIleProTrpAlaLeuTyrMetPheLeuIleValAspThrLeuThrGlyArgL : 80 !!!:!!|||!! :!!:!!|||:!!|||||| !|||!!: !||| !! !!:!| LeuPheValProCysSerMetTyrValPheLeuGluValGluAspLeuTyrAspLysL 217302 : CTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGT : 217361 81 : euLysMetLeuGlyAlaLeuCysPheTyrSerMetValProAlaMetTyrTyrAlaLe : 99 |||||:!!!!!||| !!||| !|||! ! !|||!.! !!.!! !||||||:!!|| euLysLeuPheGlyProLeuIlePheCysValMetAlaPheValLysTyrTyrSerLe 217362 : TGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCT : 217418 100 : uMetLeuArgGluAspArgIleLysGluCysValArgHisValGluGluAspTrpArg : 118 |!!::!!!.!:!!! !|||:::||||||||||||...:!!|||..!||||||||| uIleValHisLysAlaAspIleArgGluCysValArgArgIleGluArgAspTrpArg 217419 : GATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGG : 217475 119 : AsnValArgAspValAsnAspArgArgIleMetLeuAspAsnAlaArgAlaGlyArgP : 138 ||||||||| !! !!!.||||||..! |||:!!! ||||||!.! !|||||| AsnValArgCysGluLysAspArgGluAlaMetIleValAsnAlaAsnPheGlyArgL 217476 : AATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTA : 217535 139 : heIleLeuIleTyrAlaThrLeuPheLeuPheThrSerGlyPheIleTyrArgLeuIl : 157 :!::!!:!! !..!|||!!!|||:!!!:!!:!... ...||| ::! ysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAl 217536 : AATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcgttttttattacatCGC : 217592 158 : eGlnProIleAlaArgGlyLysThrValIle<-><->GlyAsnIleThrIleArgPro : 174 ! !||||||::! !|||!:!! !:!! ||||||:!!|||.!!! !||| aIleProIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuThrPheIlePro 217593 : TATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCG : 217649 175 : LeuValGlnGlyAsnTyrTyrIlePhePheAspProGlnGlnSerProAlaTyrGluI : 194 |||||| ! ! ! !.!!.!!||| !!!:: ! !!!|||.!! !!|||| LeuValPheProPheThrLysTyrIleIleAspThrArgTyrThrProThrAsnGluI 217650 : TTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCTACGAACGAAA : 217709 195 : leValPheSerLeuHisLeuLeuThrGlyIleIleIleTyrAlaValMetAlaAlaVa : 213 ||||||||! !|||!!.|||:!!.!!||| !:!:!!::!!!.!:!!! !:!!|||!. leValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAl 217710 : TTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGC : 217766 214 : lCysGlyIleAlaAlaLeuPheThrMetHisAlaCysGlyGlnLeuGluMetLeuAla : 232 !|||.!!:!:|||||| !|||.!!:!:|||||||||||||||:!!|||:!!||| ! aCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGluValLeuMet 217767 : TTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATG : 217823 233 : AlaTrpLeuGluAsnLeuSerAsnGluAspGlnArgProArgAspCysThrSerAlaG : 252 !||||||:!!:!!|||! !:!!! ! ! !!!!||| ||| !! ! AsnTrpLeuGlnHisLeuIleAspGlyArgAlaAspMetSerAsp---ThrValAspG 217824 : AACTGGCTGCAACATTTAATCGACGGTAGAGCGGATATGAGCGAT---ACTGTGGATG : 217880 253 : lnLysLeuAlaMetIleIleMetHisHisValArgIleArg{Ly} >>>> Target : 266 !:!:!!|||! |||:!!! !!.|||||||||||| !{||} 12 lyArgIleAlaSerIleValSerGlnHisValArgIleLeu{Ly}++ 217881 : GTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTA{AA}gt........... : 217926 267 : Intron 1 >>>> {s}PheValAspArgIleGlnAspIleIleGlyGlyMetCys : 279 29 bp {|}|||::: ! !! !:!! ! !:!! ! !!!:! ! ++{s}PheLeuThrLeuThrGluArgThrLeuGlnGlnIleSer 217927 : ..............ag{a}tttttgaCGCTCACAGAGAGAACCCTCCAGCAAATCTCT : 219190 280 : PheIleGluIleIleAspSerThrLeuIleLeuCysLeuLeuGlyTyrTyrValIleT : 299 ||| !|||.!!:!!! !!!|||:!! !:!!||||||:!!|||||||||:!!|||. PheAlaGluPheLeuGlyCysThrMetAspIleCysLeuValGlyTyrTyrIleIleV 219191 : TTCGCTGAATTTCTAGGATGCACCATGGACATATGTCTCGTTGGATATTACATTATCG : 219250 300 : hr >>>> Target Intron 2 >>>> GlyTrpGluArgAsnAspAlaLeuSer : 308 .! 76 bp ! !|||:!! !||||||!.! !||| al++ ++GluTrpLysSerAsnAspValThrSer 219251 : TGgt.........................agGAATGGAAATCGAATGATGTAACGAGT : 219353 309 : SerLeuThrTyrPheIleMetLeuIleSerPheThrPheAsnIlePheIleLeuCysT : 328 :!!:!!||||||.!!|||:!:|||||||||.!.||||||||||||||||||...|||| AlaValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysT 219354 : GCAGTGACATACATCATTCTACTTATATCCCTcactttcaacattttcatattttgct : 219413 329 : yrIleGlyAspAlaLeuSerThrGln : 336 ||||||||!!: !:!!:!! !||| yrIleGlyGluIleValAlaGluGln 219414 : aCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: CbirOr13 2 336 . KQ414889.1 217129 219439 + 556 M 165 495 G 0 6 M 80 240 G 1 0 M 17 51 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217130 219439 556 + . gene_id 4 ; sequence CbirOr13 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217130 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217130 217923 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217130 219439 556 + . alignment_id 4 ; Query CbirOr13 ; Align 217130 3 495 ; Align 217631 168 240 ; Align 217871 249 51 ; Align 219154 267 99 ; Align 219329 300 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 555 Query range: 3 -> 336 Target range: 208170 -> 210774 4 : ArgAlaAspLeuCysAsnSerAsnTyrGluAsnAspIleArgTyrThrValGlnValH : 23 ||| ! !!! !|||!!!||||||:!!||||||:!:!!!!:!!.!|||!:::!!: ArgGlnIlePheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuA 208171 : AGACAAATATTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGA : 208228 24 : isArgLeuIleLeuSerLeuIleGlyValTrpProIleLeuLysLysSerArgTyrAr : 42 !! !! !! |||!.!:!!|||||| !||||||! !! !! ! ! !! !!:: snValTrpThrLeuLysIleIleGlySerTrpProArgSerIleAspArgSerTrpLe 208229 : ACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTT : 208285 43 : gGlnThrLeuValLysGlyValIleLysIleValCysCysPheLeuLeuSerPheAsn : 61 !:!!!.! ! ! ! !:!!:!!!!.:!!:!! !! !! !||||||.!!|||! ! uGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIle 208286 : AGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATC : 208342 62 : LeuIleProTrpAlaLeuTyrMetPheLeuIleValAspThrLeuThrGlyArgLeuL : 81 :!!|||||| !.!:!!!:! !.!!|||:!!|||!!: !!!! !! !!:!|||| ValIleProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuL 208343 : GTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAA : 208402 82 : ysMetLeuGlyAlaLeuCysPheTyrSerMetValProAlaMetTyrTyrAlaLeuMe : 100 ||!!:! !.!!|||||| !!|||!:!! !|||!.! !.!!! !||| !:!!! ysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetTh 208403 : AGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGAC : 208459 101 : tLeuArgGluAspArgIleLysGluCysValArgHisValGluGluAspTrpArgAsn : 119 :!!||||||! ! !|||::!:!!||||||..!:!!||||||! |||||||||||| rValArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsn 208460 : TGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAAC : 208516 120 : ValArgAspValAsnAspArgArgIleMetLeuAspAsnAlaArgAlaGlyArgPheI : 139 |||..! !!! !.!.||||||!:!||||||||||||||||||!!! !!.!||| : ValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysL 208517 : GTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAAC : 208576 140 : leLeuIleTyrAlaThrLeuPheLeuPheThrSerGlyPheIleTyrArgLeuIleGl : 158 !::!!:!: ..! ! !|||:!!!:! !.!. ......||| :!! ! euIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLe 208577 : TGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTT : 208633 159 : nProIleAlaArgGlyLysThrValIle<-><->GlyAsnIleThrIleArgProLeu : 175 !|||:!!.!!|||! !|||..!||| ||||||:!:||| !||| !||| uProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeu 208634 : GCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTG : 208690 176 : ValGlnGlyAsnTyrTyrIlePhePheAspProGlnGlnSerProAlaTyrGluIleV : 195 ||| ! ! ! ! ! .!!.!!.!.||| !!:! ! ||||||!.! !!|||||| ValTyrProValProLysPheIleLeuAspValArgTyrSerProValAsnGluIleP 208691 : GTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTT : 208750 196 : alPheSerLeuHisLeuLeuThrGlyIleIleIleTyrAlaValMetAlaAlaValCy : 214 !!!:!!!!:!!!!.||||||:!!|||.!!:!! !:!! !:!!! !!.!!.!!.!|| heTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCy 208751 : TTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTG : 208807 215 : sGlyIleAlaAlaLeuPheThrMetHisAlaCysGlyGlnLeuGluMetLeuAlaAla : 233 ||||:!:|||||||||.!!.!!|||||||||||||||||||||:!!!!:||| !:!! sGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSer 208808 : CGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCC : 208864 234 : TrpLeuGluAsnLeuSerAsnGluAspGlnArgProArgAspCysThrSerAlaGlnL : 253 |||:!!|||!!.||| ! !!:! !:!..! !..!!!: !.!! !! !|||! TrpMetGluLysLeuVal---AspGlyArgGluAspGluGluLysAsnLeuAspGlnA 208865 : TGGATGGAGAAGTTGGTC---GATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGA : 208921 254 : ysLeuAlaMetIleIleMetHisHisValArgIleArg{Ly} >>>> Target In : 266 :!||||||! |||:!: !!!.|||||||||:!:! !{!!} 1536 rgLeuAlaAsnIleValGluGlnHisValArgValIle{As}++ 208922 : GGTTGGCTAATATCGTGGAGCAGCATGTTCGAGTGATC{AA}gt.............. : 208964 267 : tron 1 >>>> {s}PheValAspArgIleGlnAspIleIleGlyGlyMetCysPhe : 280 bp {.}|||:!!! !! !! !:!!:!!:!!:!: !! !!!:! !!. ++{n}PheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeu 208965 : ...........ag{T}TTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTG : 210538 281 : IleGluIleIleAspSerThrLeuIleLeuCysLeuLeuGlyTyrTyrValIleThr : 300 ||||||!!::!:! !!!||||||! !:!!|||!!!||||||||||||..!!!:! ! IleGluMetValGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle+ 210539 : ATAGAAATGGTGGGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTg : 210598 301 : >>>> Target Intron 2 >>>> GlyTrpGluArgAsnAspAlaLeuSerSer : 309 66 bp ! !|||!!: !!!.||| !!:!!|||||| + ++GluTrpAspSerLysAspProIleSerSer 210599 : t.........................agGAATGGGACTCTAAAGACCCTATCAGCAGT : 210691 310 : LeuThrTyrPheIleMetLeuIleSerPheThrPheAsnIlePheIleLeuCysTyrI : 329 |||||||||.!.:!!:!:|||! !||| !!||||||||||||||||||!!!||||||| LeuThrTyrIleValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrI 210692 : CTGACGTACATAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACA : 210751 330 : leGlyAspAlaLeuSerThrGln : 336 |||||!!:!.!|||:!! !||| leGlyGluValLeuAlaGluGln 210752 : TCGGTGAAGTGTTGGCTGAACAg : 210774 vulgar: CbirOr13 3 336 . KQ414889.1 208170 210774 + 555 M 164 492 G 0 6 M 72 216 G 1 0 M 25 75 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208171 210774 555 + . gene_id 5 ; sequence CbirOr13 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208171 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208171 208961 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208171 210774 555 + . alignment_id 5 ; Query CbirOr13 ; Align 208171 4 492 ; Align 208669 168 216 ; Align 208885 241 75 ; Align 210499 267 99 ; Align 210664 300 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 510 Query range: 8 -> 334 Target range: 226903 -> 228352 9 : AsnSerAsnTyrGluAsnAspIleArgTyrThrValGlnValHisArgLeuIleLeuS : 28 .!.!:!:!!|||:!!.!. !!:!:!.! !:!:!!|||:!!:!!|||! !:!:|||! GluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuL 226904 : GAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGA : 226961 29 : erLeuIleGlyValTrpProIleLeuLysLysSerArgTyrArgGlnThrLeuValLy : 47 .!! !:!!|||:!!|||||| ! !:::|||||| ! ! ! !! !! ! !!.. ysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSe 226962 : AACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTC : 227018 48 : sGlyValIleLysIleValCysCysPheLeuLeuSerPheAsnLeuIleProTrpAla : 66 . !!:!!!!: .!!:!!|||! ! |||:!!||||||.!.|||:!! !! ! !.! rTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGly 227019 : CTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGC : 227075 67 : LeuTyrMetPheLeuIleValAspThrLeuThrGlyArgLeuLysMetLeuGlyAlaL : 86 ||||||:!! !!||| ||| ! ! ! !..!! !|||||||||:!!||| !!: LeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProM 227076 : TTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGA : 227135 87 : euCysPheTyrSerMetValProAlaMetTyrTyrAlaLeuMetLeuArgGluAspAr : 105 !!! !|||!:!:!!||| !! ! !! !|||! ! !|||! !!!!!.!|||||| etSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAs 227136 : TGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGA : 227192 106 : gIleLysGluCysValArgHisValGluGluAspTrpArgAsnValArgAspValAsn : 124 !||| |||||||||..!!..:!!:!! !||||||!:!|||:!!||| !!:!!.!. pIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGlu 227193 : CATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAG : 227249 125 : AspArgArgIleMetLeuAspAsnAlaArgAlaGlyArgPheIleLeuIleTyrAlaT : 144 ||||||!.!:!:|||:!! !!||| ! !|||||| :!::!!! ! !..!| AspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysT 227250 : GACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCA : 227309 145 : hrLeuPheLeuPheThrSerGlyPheIleTyrArgLeuIleGlnProIleAlaArgGl : 163 ||!!!|||:!!|||!::||| ...::: :!!:!! !|||||| ! !|| hrPhePheValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGl 227310 : CGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGG : 227366 164 : yLys<-><->ThrValIleGlyAsnIleThrIleArgProLeuValGlnGlyAsnTyr : 180 |!.. |||! ! !|||||| !!:! !! !! !:!! ! ! ! ySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPhePro 227367 : AAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCA : 227423 181 : TyrIlePhePheAspProGlnGlnSerProAlaTyrGluIleValPheSerLeuHisL : 200 ! |||.!! !||| !!:: ! |||||| ! !!|||||| !!||||||:!!!!.! LysIleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnP 227424 : AAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAAT : 227483 201 : euLeuThrGlyIleIleIleTyrAlaValMetAlaAlaValCysGlyIleAlaAlaLe : 219 !!:!!|||||||||:!::!::!!!.!|||! !:!!|||!.!|||.!!!!:|||||||| heValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLe 227484 : TTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCT : 227540 220 : uPheThrMetHisAlaCysGlyGlnLeuGluMetLeuAlaAlaTrpLeuGluAsnLeu : 238 |.!!.!!:!:|||||||||||||||:!!|||:!!|||!.!:!!||||||! !:!!||| uLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeu 227541 : GCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTG : 227597 239 : SerAsnGluAspGlnArgProArgAspCysThrSerAlaGlnLysLeuAlaMetIleI : 258 ! ! !!:! !::! ! !! !..! ||| !! !.!.!:!:!!|||! |||: Ile---AspGlyArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleV 227598 : ATC---GACGGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCG : 227654 259 : leMetHisHisValArgIleArg{Ly} >>>> Target Intron 1 >>>> {s : 266 !!! ||||||||||||||| !{!!} 396 bp {. alThrHisHisValArgIleLeu{As}++ ++{n 227655 : TCACTCACCACGTTCGAATATTG{AA}gt.........................ag{C : 228076 267 : }PheValAspArgIleGlnAspIleIleGlyGlyMetCysPheIleGluIleIleAsp : 285 }|||:!!! !! !|||:!! ! ! !!!: ! !!!:..!|||:!!|||.!!:!!! }PheLeuAlaLeuIleGluLysThrMetGlnGlnIleAlaPheValGluPheLeuGly 228077 : }TTTCTGGCCCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGG : 228131 286 : SerThrLeuIleLeuCysLeuLeuGlyTyrTyrValIleThr >>>> Target In : 300 !!!|||:!!||||||||||||:!!! !||||||:!!|||||| 72 b CysThrIleIleLeuCysLeuIleGluTyrTyrIleIleThr++ 228132 : TGTACAATAATTCTGTGCCTCATCGAGTATTACATCATAACGgt.............. : 228178 301 : tron 2 >>>> GlyTrpGluArgAsnAspAlaLeuSerSerLeuThrTyrPheIle : 314 p ! !|||.!.! !!!.!!: ! !! !:!!:!!||||||! ++GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAla 228179 : ...........agGAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCG : 228290 315 : MetLeuIleSerPheThrPheAsnIlePheIleLeuCysTyrIleGlyAspAlaLeuS : 334 :!:|||:!!||||||||||||||||||||||||...||||||||||||!!: !:!!: LeuLeuLeuSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValA 228291 : TTACTTTTATCCTTTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTG : 228350 335 : er : 334 !! la 228351 : CC : 228352 vulgar: CbirOr13 8 334 . KQ414889.1 226903 228352 + 510 M 156 468 G 0 6 M 75 225 G 1 0 M 25 75 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226904 228352 510 + . gene_id 6 ; sequence CbirOr13 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226904 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226904 227679 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228352 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228352 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226904 228352 510 + . alignment_id 6 ; Query CbirOr13 ; Align 226904 9 468 ; Align 227378 165 225 ; Align 227603 241 75 ; Align 228077 267 99 ; Align 228248 300 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 499 Query range: 0 -> 365 Target range: 259721 -> 262012 1 : MetTyrGluArgAlaAspLeuCysAsnSerAsnTyrGluAsnAspIleArgTyrThrV : 20 ||| .!.!:!:!!! !!! .!.!!!!:!!:! !:! !!! ! !|||!:!: MetThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerL 259722 : ATGACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCC : 259779 21 : alGlnValHisArgLeuIleLeuSerLeuIleGlyValTrpProIleLeuLysLysSe : 39 !!||| !!:!!|||! !.!!|||!.!! !||||||!.!|||||| !! !......!! euGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerTh 259780 : TCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCAC : 259836 40 : rArgTyrArgGlnThrLeuValLysGlyValIleLysIleValCysCysPheLeuLeu : 58 !! ! ! !:!!! !:!!:!!...! !:!!:!:! .!!:!!|||! ! ! !:!! rThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIle 259837 : GACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATA : 259893 59 : SerPheAsnLeuIleProTrpAlaLeuTyrMetPheLeuIleValAspThrLeuThrG : 78 ! !!!.!|||||||||!! !.!|||:!!|||.!.||| !!!:!:!||| ! LeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrM 259894 : CTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACA : 259953 79 : lyArgLeuLysMetLeuGlyAlaLeuCysPheTyrSerMetValProAlaMetTyrTy : 97 !!:! !|||:!!|||||| !!||| ! !!::! !:!:! ! ! !! ||| etLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrTh 259954 : TGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACAC : 260010 98 : rAlaLeuMetLeuArgGluAspArgIleLysGluCysValArgHisValGluGluAsp : 116 .!!|||:!!||||||! !||| ...||||||..!|||||||||.!.||| rThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAsp 260011 : AACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGAT : 260067 117 : TrpArgAsnValArgAspValAsnAspArgArgIleMetLeuAspAsnAlaArgAlaG : 136 ||||||! !:!!! ! ! !!!.|||!:!!.!:!:|||||| !!|||!:! !| TrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheG 260068 : TGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCG : 260127 137 : lyArgPheIleLeuIleTyrAlaThrLeuPheLeuPheThrSerGlyPheIleTyrAr : 155 |||||!:!:!! ! !! !..!.!! !|||:!! !.!!! !.!. !!:! ! lyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCy 260128 : GCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTG : 260184 156 : gLeuIleGlnProIleAlaArgGlyLysThrValIleGlyAsnIleThr<-><->Ile : 172 !|||:!! ! !:!:::!! !! ! !! ! !:!:|||||| ||| :!! sLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal 260185 : TTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTT : 260241 173 : ArgProLeuValGlnGlyAsnTyrTyrIlePhePheAspProGlnGlnSerProAlaT : 192 !.!! !||| ! !.! ||| ! .!..!.:!! !.!..!.|||||| ! HisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetA 260242 : CATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGA : 260301 193 : yrGluIleValPheSerLeuHisLeuLeuThrGlyIleIleIleTyrAlaValMetAl : 211 !!|||||||||.!! !:!!!!.!!!:!!:!!|||.!!|||:!: !!:!! !! !. snGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrVa 260302 : ACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGT : 260358 212 : aAlaValCysGlyIleAlaAlaLeuPheThrMetHisAlaCysGlyGlnLeuGluMet : 230 !!.!:!!! !.!!:!!||||||:!!.!.||| ||||||||||||||||||.!.:!! lGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnVal 260359 : TGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTG : 260415 231 : LeuAlaAlaTrpLeuGluAsnLeuSerAsnGluAspGlnArgProArgAspCysThrS : 250 ||| !! !|||:!! !.!.!!! !:!!|||...::!!.! !!:! ! .!! LeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaP 260416 : CTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTC : 260475 251 : erAlaGlnLysLeuAlaMetIleIleMetHisHisValArgIleArg{Ly} >>>> : 266 !! !:!!:!!:!!!.!:!!|||:!! ||||||:!!||| !! !{! } roPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeu{Th}++ 260476 : CTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC{AC}gt..... : 260527 267 : Target Intron 1 >>>> {s}PheValAspArgIleGlnAspIleIleGlyGly : 277 257 bp { }|||:!!...||||||:!!|||:!:!!:..! !! ++{r}PheIleSerArgIleGluAspValMetAsnArg 260528 : ....................ag{C}TTCATATCGCGTATCGAGGATGTGATGAACCGG : 260813 278 : MetCysPheIleGluIleIleAspSerThrLeuIleLeuCysLeuLeuGlyTyrTyrV : 297 !!:||||||:!:|||:!:.!! !!!|||||| !:!!||||||||||||||||||: IleCysPheLeuGluLeuPheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrI 260814 : ATATGCTTCCTGGAGTTGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATA : 260873 298 : alIleThr >>>> Target Intron 2 >>>> GlyTrpGluArgAsnAspAla : 306 !!:!!! ! 852 bp ! !|||! ..!.!.||| ! leLeuMet++ ++GluTrpAlaGluGlnAspIle 260874 : TTCTTATGgt.........................agGAATGGGCTGAGCAAGATATA : 261752 307 : LeuSerSerLeuThrTyrPheIleMetLeuIleSerPheThrPheAsnIlePheIleL : 326 ! !!:! !! !|||||||||!!:|||||||||:!!.!! !||||||:!!||||||: GlnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheIleI 261753 : CAAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAA : 261812 327 : euCysTyrIleGlyAspAlaLeuSerThrGln >>>> Target Intron 3 >>> : 337 !!||||||||||||!!: !|||!!! !||| 81 bp leCysTyrIleGlyGluIleLeuThrGluGln++ 261813 : TCTGTTACATCGGTGAAATACTAACGGAACAGgt........................ : 261847 338 : > GlySerLysValHisThrThrSerCysThrIleAspTrpTyrCysLeuSerAsnL : 355 !!||||||||| ! !..! !! !! !! !:!!||||||! !||| !!:!!| ++CysSerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuProAspL 261848 : .agTGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACCTGATA : 261980 356 : ysGluAlaArgTyrLeuIleLeuIleIleAla : 365 ||... !! ! !!|||||||||||||||||| ysSerIleLeuAspLeuIleLeuIleIleAla 261981 : AAAGTATCCTTGATTTGATTTTGATCATTGCA : 262012 vulgar: CbirOr13 0 365 . KQ414889.1 259721 262012 + 499 M 171 513 G 0 6 M 94 282 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259722 262012 499 + . gene_id 7 ; sequence CbirOr13 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259722 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259722 260524 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262012 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262012 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259722 262012 499 + . alignment_id 7 ; Query CbirOr13 ; Align 259722 1 513 ; Align 260241 172 282 ; Align 260783 267 99 ; Align 261734 300 111 ; Align 261926 337 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 473 Query range: 17 -> 336 Target range: 262849 -> 264648 18 : TyrThrValGlnValHisArgLeuIleLeuSerLeuIleGlyValTrpProIleLeuL : 37 |||!:!:!!|||:!!:!!|||! !:!:|||!.!! !||||||!.!||||||:!:! ! TyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerA 262850 : TACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCG : 262907 38 : ysLysSerArgTyrArgGlnThrLeuValLysGlyValIleLysIleValCysCysPh : 56 ..!! ! ! ! !:!! !:!!:!! ! !:!!:!!! :!!||||||! !! laSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCy 262908 : CCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTG : 262964 57 : eLeuLeuSerPheAsnLeuIleProTrpAlaLeuTyrMetPheLeuIleValAspThr : 75 !|||:!! !! !!.!:!!||||||! !|||:!!!!: !!||| !!.!!!:!.! sLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsn 262965 : TCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAAT : 263021 76 : LeuThrGlyArgLeuLysMetLeuGlyAlaLeuCysPheTyrSerMetValProAlaM : 95 !!! ! !!:!|||:!!:!:|||||| !!||| !! !::! !:!:! ! ! !! PheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleA 263022 : TTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCA : 263081 96 : etTyrTyrAlaLeuMetLeuArgGluAspArgIleLysGluCysValArgHisValGl : 114 ||| ! !|||:!!|||!.!... ! !|||:!!! ||||||!:!||||||:! snTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGl 263082 : ATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCA : 263138 115 : uGluAspTrpArgAsnValArgAspValAsnAspArgArgIleMetLeuAspAsnAla : 133 !||||||||| !!! !|||! ! :!!.!.|||!:!|||||||||||| ! |||||| nGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAla 263139 : GGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCG : 263195 134 : ArgAlaGlyArgPheIleLeuIleTyrAlaThrLeuPheLeuPheThrSerGlyPheI : 153 !:! !||||||!:!:!: ! !! !..!.!!:!!|||:!! |||||| !.!. LysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetC 263196 : AAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGT : 263255 154 : leTyrArgLeuIleGlnProIleAlaArgGlyLysThrValIleGlyAsnIleThr<- : 172 ! ! !!|||:!! ! !!.!!.!!! ! ! !! !! ! !|||||| ||| ysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrAr 263256 : GCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAG : 263312 173 : ><->IleArgProLeuValGlnGlyAsnTyrTyrIlePhePheAspProGlnGlnSer : 189 :!!||| !||| ! ! ||| ! .!!.!! !.!. !!:! gIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThrAsn 263313 : AATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAAT : 263369 190 : ProAlaTyrGluIleValPheSerLeuHisLeuLeuThrGlyIleIleIleTyrAlaV : 209 |||.!! !!|||||| !!.!!:!! !!!.!!!|||:!!|||.!!|||:!! !|||. ProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaT 263370 : CCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGA : 263429 210 : alMetAlaAlaValCysGlyIleAlaAlaLeuPheThrMetHisAlaCysGlyGlnLe : 228 .!! !.!!.!!.!! !|||!!:.!!|||:!!|||.!! ||||||||||||||||| hrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLe 263430 : CAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTT : 263486 229 : uGluMetLeuAlaAlaTrpLeuGluAsnLeuSerAsnGluAspGlnArgProArgAsp : 247 |.!.:!!||| !:!!|||:!! !.!.!!! !|||:!!..!::! ! !!.! ! uAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLys 263487 : GAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAG : 263543 248 : CysThrSerAlaGlnLysLeuAlaMetIleIleMetHisHisValArgIleArg{Ly} : 266 ! !! ! ! :!!:!!!.!:!!|||:!! ||||||:!!|||:!!! !{!.} AsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeu{Se} 263544 : AATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTG{AG} : 263600 267 : >>>> Target Intron 1 >>>> {s}PheValAspArgIleGlnAspIleIl : 275 72 bp {.}|||:!!|||||||||:!!:!!:!:!! ++ ++{r}PheIleAspArgIleLysAsnValMe 263601 : gt.........................ag{T}TTCATAGATCGTATTAAGAATGTGAT : 263699 276 : eGlyGlyMetCysPheIleGluIleIleAspSerThrLeuIleLeuCysLeuLeuGly : 294 :.!! !!!:||||||:!:|||:!!.!! ! :!!|||||| !:!!|||:!!|||||| tSerThrIleCysPheValGluLeuPheLysAlaThrLeuAspIleCysMetLeuGly 263700 : GAGTACGATATGTTTCGTGGAGTTATTCAAGGCTACGCTGGATATATGCATGCTAGGT : 263756 295 : TyrTyrValIleThr >>>> Target Intron 2 >>>> GlyTrpGluArgAs : 304 ||||||:!!:!!||| 764 bp ! !||||||!!!:! TyrTyrIleLeuThr++ ++GluTrpGluSerHi 263757 : TACTACATACTTACGgt.........................agGAATGGGAAAGTCA : 264550 305 : nAspAlaLeuSerSerLeuThrTyrPheIleMetLeuIleSerPheThrPheAsnIle : 323 :||| ::: !|||||||||!!:!!:|||||||||.!. ! !|||||| sAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerMetCysGlyAsnIle 264551 : tgatattcaaaatttgacTACATATTTCATGATACTGATATCAATGTGCGGCAACATT : 264607 324 : PheIleLeuCysTyrIleGlyAspAlaLeuSerThrGln : 336 |||:!!:!!||||||||||||!!: !|||!!! !||| PheLeuMetCysTyrIleGlyGluIleLeuThrGluGln 264608 : TTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcag : 264648 vulgar: CbirOr13 17 336 . KQ414889.1 262849 264648 + 473 M 154 462 G 0 6 M 94 282 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 33 99 5 0 2 I 0 760 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262850 264648 473 + . gene_id 8 ; sequence CbirOr13 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262850 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262850 263601 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 263673 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263672 263673 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 263674 263773 . + . KQ414889.1 exonerate:protein2genome:local exon 263674 263773 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263774 263775 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263774 264537 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264536 264537 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264538 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262850 264648 473 + . alignment_id 8 ; Query CbirOr13 ; Align 262850 18 462 ; Align 263318 172 282 ; Align 263675 267 99 ; Align 264538 300 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 406 Query range: 10 -> 268 Target range: 221357 -> 222134 11 : AsnTyrGluAsnAspIleArgTyrThrValGlnValHisArgLeuIleLeuSerLeuI : 30 :!!|||:!!!..:!!:!:!:!! !:!||||||:!! !|||! !||||||!.!! !| AspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProI 221358 : GATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGA : 221415 31 : leGlyValTrpProIleLeuLysLysSerArgTyrArgGlnThrLeuValLysGlyVa : 49 ||||||||||||||! !! ! !!.! ! ! !:!!! !! !:!! ! !!:! leGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLe 221416 : TCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 50 : lIleLysIleValCysCysPheLeuLeuSerPheAsnLeuIleProTrpAlaLeuTyr : 68 !|||!!.:!!||||||! ! !|||:!!!!!||| !|||:!!|||!! ::!|||||| uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 69 : MetPheLeuIleValAspThrLeuThrGlyArgLeuLysMetLeuGlyAlaLeuCysP : 88 :!!.!!||| !|||!!: !:!! !..!|||:!!|||:!!|||||| !!||| !!| ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 89 : heTyrSerMetValProAlaMetTyrTyrAlaLeuMetLeuArgGluAspArgIleLy : 107 ||! ! !|||!.! ! !! !|||:!! !|||!!:||| !|||:!! !|||:: heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 108 : sGluCysValArgHisValGluGluAspTrpArgAsnValArgAspValAsnAspArg : 126 :||||||:!!..!!.!:!!||| !||||||!:!|||:!!! ! !! !!!.|||!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 127 : ArgIleMetLeuAspAsnAlaArgAlaGlyArgPheIleLeuIleTyrAlaThrLeuP : 146 !||||||:!!!!:||||||! ! !|||||| :!::!!!!: !..!|||!!!| AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 147 : heLeuPheThrSerGlyPheIleTyrArgLeuIleGlnProIleAlaArgGlyLysTh : 165 ||:!!!:!!:!... ...||| ::! ! !|||.!!::! !||||||! heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 166 : rValIleGly<-><->AsnIleThrIleArgProLeuValGlnGlyAsnTyrTyrIle : 182 ! ! ! |||:::|||... |||:!!||| ! !! .!! eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 183 : PhePheAspProGlnGlnSerProAlaTyrGluIleValPheSerLeuHisLeuLeuT : 202 .!! !!||| !!!:! ! ||||||!.! !!||||||:!!|||||||||!!.:!!:!!. IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 203 : hrGlyIleIleIleTyrAlaValMetAlaAlaValCysGlyIleAlaAlaLeuPheTh : 221 !!||| !:!:!!::!!::!:!!! :!!|||!.!|||.!!:!:!.!|||:!!|||.! laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 222 : rMetHisAlaCysGlyGlnLeuGluMetLeuAlaAlaTrpLeuGluAsnLeuSerAsn : 240 !:!!|||||||||||||||:!!:!!:!!||| !::!||||||:!!:!!|||! !||| aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 241 : GluAspGlnArgProArgAspCysThrSerAlaGlnLysLeuAlaMetIleIleMetH : 260 ! !!:! ! !! ! ! !!.! !! !::!!:!:!!|||! !|||:!:! ! ---GlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnG 222052 : ---GGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATC : 222108 261 : isHisValArgIleArgLysPheVal : 268 !.|||||||||||| !:!!!:!||| lnHisValArgIleLeuGlnTyrVal 222109 : AACACGTTCGAATATTGCAGTATGTA : 222134 vulgar: CbirOr13 10 268 . KQ414889.1 221357 222134 + 406 M 158 474 G 0 6 M 72 216 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221358 222134 406 + . gene_id 9 ; sequence CbirOr13 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221358 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221358 222134 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221358 222134 406 + . alignment_id 9 ; Query CbirOr13 ; Align 221358 11 474 ; Align 221838 169 216 ; Align 222054 242 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 382 Query range: 2 -> 336 Target range: 212827 -> 214740 3 : GluArgAlaAspLeuCysAsnSerAsnTyrGluAsnAspIleArgTyrThrValGlnV : 22 |||!:! !.!.:!! :!!!!!!.!||||||!!. :::... :::::: ! GluLysLeuGlnValGluAspCysThrTyrGluLysArgValAsnLeuSerIleProT 212828 : GAGAAATTGCAGGTCGAAGACTGTACCTACGAGAAACGtgtaaatttaagtatacCGT : 212885 23 : alHisArgLeuIleLeuSerLeuIleGlyValTrpProIleLeuLysLysSerArgTy : 41 !:!!|||! !:!!|||!.!! !! |||:!!|||||| ! !... ! ! ! rpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspLysSerTyrValSerPr 212886 : GGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCTACGTTTCACC : 212942 42 : rArgGlnThrLeuValLysGlyValIleLysIleValCysCysPheLeuLeuSerPhe : 60 ! !:!!! ! !:!! !!:!!:!!!!.! !||||||! ! !|||:!!.!!!:! oIleGluLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyr 212943 : GATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTAC : 212999 61 : AsnLeuIleProTrpAlaLeuTyrMetPheLeuIleValAspThrLeuThrGlyArgL : 80 !:!!||||||!! ::!||||||:!!|||||| !|||:::...::: ...: LeuValIleProCysSerLeuTyrValPheLeuAspValGluAsnIlePheLysGluI 213000 : CTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaagaga : 213059 81 : euLysMetLeuGlyAlaLeuCysPheTyrSerMetValProAlaMetTyrTyrAlaLe : 99 !!:!!:!!!!!||| !!!!...|||! ! ! !.!! ! !! !|||:!!:!!|| leGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLe 213060 : TCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTT : 213116 100 : uMetLeuArgGluAspArgIleLysGluCysValArgHisValGluGluAspTrpArg : 118 |!!:|||!.!! ||| !|||::: !||||||..!|||:!!:!! ! ||||||!:! uIleLeuHisGlyAspAspIleArgThrCysValGluHisMetLysTyrAspTrpLys 213117 : GATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAG : 213173 119 : AsnValArgAspValAsnAspArgArgIleMetLeuAspAsnAlaArgAlaGlyArgP : 138 |||:!!! ! !!! !.!.|||!:!..!|||||| ! ||||||!!! !|||!:! AsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysA 213174 : AATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGA : 213233 139 : heIleLeuIleTyrAlaThrLeuPheLeuPheThrSerGlyPheIleTyrArgLeuIl : 157 |||:!!! ! !..!.!!!!!|||:!!!:!|||.!! ! .!!||| !|||:! rgIleValThrIleCysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuVa 213234 : GGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGT : 213290 158 : eGlnProIleAlaArgGlyLysThrValIleGly<-><->AsnIleThrIleArgPro : 174 ! !||||||::! !! !|||! !||| ! ! |||:!:|||.!!|||! ! lValProIleSerAlaAspLysMetValAlaGluAspLeuAsnValThrPheArgGln 213291 : CGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAA : 213347 175 : LeuValGlnGlyAsnTyrTyrIlePhePheAspProGlnGlnSerProAlaTyrGluI : 194 :!!||| ! !! .!!.!! !!||| !!:! ! ||||||!.! !!|||| MetValValProValSerArgPheIleValAspValArgTyrSerProValAsnGluI 213348 : ATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGA : 213407 195 : leValPheSerLeuHisLeuLeuThrGlyIleIleIleTyrAlaValMetAlaAlaVa : 213 || !!|||! !:!!!!.:!!:!!.!!|||:!!:!:|||:!!|||:!! !!.!!.!!. lePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAl 213408 : TATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGC : 213464 214 : lCysGlyIleAlaAlaLeuPheThrMetHisAlaCysGlyGlnLeuGluMetLeuAla : 232 !|||.!!:!:||||||:!!|||.!!:!:|||||||||||||||:!!! !!:||| ! aCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMet 213465 : TTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATG : 213521 233 : AlaTrpLeuGluAsnLeuSerAsnGluAspGlnArgProArgAspCysThrSerAlaG : 252 ::!|||||||||:!!|||! ! !!:! !::!..! !! !..! !.! !! !. SerTrpLeuGluHisLeuIle---AspGlyArgGluAspMetSerLysAsnValAspA 213522 : AGCTGGCTGGAACATTTGATA---GACGGTAGAGAGGATATGAGCAAGAATGTGGACG : 213578 253 : lnLysLeuAlaMetIleIleMetHisHisValArgIleArgLysPheValAspArgIl : 271 !.!:!:!!|||:!:|||:!:! !!.||||||||||||! !|||!::|||!!: :! spArgIleAlaValIleValAsnGlnHisValArgIleLeuLysTrpValGlu---Le 213579 : ACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTGAAGTGGGTGGAA---TT : 213632 272 : eGln >>>> Target Intron 1 >>>> AspIleIleGlyGlyMetCysPheI : 281 : ! 843 bp ! !:!! !! !:!:! !||| uTrp++ ++LysAlaLeuArgGlnValSerPheA 213633 : GTGGgt.........................agAAAGCACTTCGGCAAGTATCTTTCG : 214505 282 : leGluIleIleAspSerThrLeuIleLeuCysLeuLeuGlyTyrTyrValIleThrGl : 300 !|||:!!:!!! !!!|||:!!! !|||||||||:!!|||||||||:!!||||||! laGluLeuLeuValCysThrValAsnLeuCysLeuValGlyTyrTyrIleIleThrVa 214506 : CTGAATTATTAGTATGCACGGTGAATCTCTGTCTCGTTGGATATTACATAATAACGGT : 214562 301 : yTrpGluArgAsnAspAlaLeuSerSerLeuThrTyrPheIleMetLeuIleSerPhe : 319 !!! ..! ::: ||| ||| lCysArgGlyHisLysAsnAsnSerArgLysIleTyrGlnThrSerSerAsnPhe*** 214563 : ATGCAGAggacataaaaataattcacgcaaaatatatcaaacatcgtcaaatttttaa : 214619 320 : ThrPhe{As} >>>> Target Intron 2 >>>> {n}IlePheIleLeuCysT : 328 :::{!:} 68 bp {!}|||||||||...|||| TyrTyr{Se}+- +-{r}IlePheIlePheCysT 214620 : tattat{ag}ga.........................aa{t}attttcatattttgtt : 214714 329 : yrIleGlyAspAlaLeuSerThrGln : 336 ||||||||!!: !:!!||| !||| yrIleGlyGluLeuValSerGluGln 214715 : aCATAGGCGAGCTTGTGTCTGAACAG : 214740 vulgar: CbirOr13 2 336 . KQ414889.1 212827 214740 + 382 M 166 498 G 0 6 M 71 213 G 1 0 M 29 87 G 1 0 M 2 6 5 0 2 I 0 839 3 0 2 M 49 147 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212828 214740 382 + . gene_id 10 ; sequence CbirOr13 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212828 213637 . + . KQ414889.1 exonerate:protein2genome:local exon 212828 213637 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 213638 213639 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213638 214480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214479 214480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214481 214629 . + . KQ414889.1 exonerate:protein2genome:local exon 214481 214629 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214630 214631 . + . intron_id 2 ; splice_site "gA" KQ414889.1 exonerate:protein2genome:local intron 214630 214697 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214696 214697 . + . intron_id 1 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 214698 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214698 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212828 214740 382 + . alignment_id 10 ; Query CbirOr13 ; Align 212828 3 498 ; Align 213332 169 213 ; Align 213545 241 87 ; Align 213632 271 6 ; Align 214481 273 147 ; Align 214699 323 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 379 Query range: 8 -> 266 Target range: 289708 -> 290482 9 : AsnSerAsnTyrGluAsnAspIleArgTyrThrValGlnValHisArgLeuIleLeuS : 28 |||..!..!||||||!..||||||||||||||| !!:!!:!! !!.!! !||||||! AsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleLeuL 289709 : AACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCTTGA : 289766 29 : erLeuIleGlyValTrpPro<->IleLeuLysLysSerArgTyrArgGlnThrLeuVa : 46 .!! !||||||:!!!::||| :!!!!!!..::::!!!!! |||:!! ! !!. ysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgThrAl 289767 : AACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGC : 289823 47 : lLysGlyValIleLysIleValCysCysPheLeuLeuSerPheAsnLeuIleProTrp : 65 !..!! !:!!:!:! :!:|||||||||! :!!|||..!|||! !:!!:!!|||!:: aSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValProPhe 289824 : GTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCGTTC : 289880 66 : AlaLeuTyrMetPheLeuIleValAspThrLeuThrGlyArgLeuLysMetLeuGlyA : 85 ::!! !:!!:!:.!.!!!! !! !:!! !:!!!.! ! !:!!|||! |||||| SerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuGlyP 289881 : AGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCGGAC : 289940 86 : laLeuCysPheTyrSerMetValProAlaMetTyrTyrAlaLeuMetLeuArgGluAs : 104 !!||| |||! !! !! ..! ! !! !|||! ! !!!!! :!!!:!! .. roLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGlySe 289941 : CGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGGTTC : 289997 105 : pArgIleLysGluCysValArgHisValGluGluAspTrpArgAsnValArgAspVal : 123 . !||| ...||||||!:!|||:!!|||..!||||||!:!! :!!||||||! ! rAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAspGlu 289998 : AGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGACGAG : 290054 124 : AsnAspArgArgIleMetLeuAspAsnAlaArgAlaGlyArgPheIleLeuIleTyrA : 143 :!! !!||| !||||||||| !!!.!! ! !.!!||| !:!!:!!! ! . AspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysLeuC 290055 : GATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAACTGT : 290114 144 : laThrLeuPheLeuPheThrSerGlyPheIleTyrArgLeuIleGlnProIleAlaAr : 162 .!.!!:!!||||||!:!! !.!!|||.!. !|||!.! !:!! !|||:!: ! ysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPheSe 290115 : GCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTTCTC : 290171 163 : gGlyLysThrValIleGlyAsnIleThrIleArgProLeuValGlnGlyAsnTyrTyr : 181 ! !|||!:!|||! !||||||:!:|||||||||||||||..! ! !..!||| ! rLysLysSerValAsnGlyAsnValThrIleArgProLeuThrTyrProGlyTyrGlu 290172 : GAAGAAGAGCGTGAACGGTAACGTGACTATCAGACCTCTAACTTATCCCGGTTACGAG : 290228 182 : IlePhePheAspProGlnGlnSerProAlaTyrGluIleValPheSerLeuHisLeuL : 201 ||||||||| !|||:!!||||||||||||||||||||||||!!!:!!|||! !: GluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetHisCysV 290229 : GAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTG : 290288 202 : euThrGlyIleIleIleTyrAlaValMetAlaAlaValCysGlyIleAlaAlaLeuPh : 220 !! !! !!!:|||! !:!!! !|||!.!! !.!!:!:.!!.!!:!!|| alTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePh 290289 : TCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGATCTT : 290345 221 : eThrMetHisAlaCysGlyGlnLeuGluMetLeuAlaAlaTrpLeuGluAsnLeuSer : 239 |.!!! |||.!!|||||||||:!!:!!!!:! !.!!.!! !!||||||:!!|||!!! eAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAspLeuThr 290346 : CGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTGACA : 290402 240 : AsnGluAspGlnArgProArgAspCysThrSerAlaGlnLysLeuAlaMetIleIleM : 259 !!...!! ..!! ! !..! ! ! ..!||| .!.:::||||||:!::!!:!:! LysArgGlyMetLeuLeuGluLysGlyValSer---AspArgLeuAlaValValValS 290403 : AAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGT---GATCGTTTGGCGGTTGTTGTGA : 290459 260 : etHisHisValArgIleArgLys : 266 !||||||..!||| !||| erGlyHisValGluIleLeuLys 290460 : GCGGTCACGTGGAGATCTTGAAG : 290482 vulgar: CbirOr13 8 266 . KQ414889.1 289708 290482 + 379 M 26 78 G 0 3 M 216 648 G 1 0 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289709 290482 379 + . gene_id 11 ; sequence CbirOr13 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289709 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289709 290482 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 289709 290482 379 + . alignment_id 11 ; Query CbirOr13 ; Align 289709 9 78 ; Align 289790 35 648 ; Align 290438 252 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 365 Query range: 12 -> 269 Target range: 204221 -> 204989 13 : GluAsnAspIleArgTyrThrValGlnValHisArgLeuIleLeuSerLeuIleGlyV : 32 |||.!.|||:!:||||||.!!..!!:: !! !:!! !||||||.!!:!!:!!|||! GluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyA 204222 : GAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTG : 204279 33 : alTrpProIleLeuLysLysSerArgTyrArgGlnThrLeuValLysGlyValIleLy : 51 .!|||||||||! ! !!!.||| ! ! !! !||||||::! !!:!! ! ! laTrpProIleProValAsnSerSerProPheThrArgLeuValArgArgIleGluHi 204280 : CGTGGCCGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACA : 204336 52 : sIleValCysCysPheLeuLeuSerPheAsnLeuIleProTrpAlaLeuTyrMetPhe : 70 :!!||| ! ||||||... ... :!!:!!||| ! !||||||:!!||| sValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPhe 204337 : CGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTC : 204393 71 : LeuIleValAspThrLeuThrGlyArgLeuLysMetLeuGlyAlaLeuCysPheTyrS : 90 |||! ! ! ! !.! !! ! !|||||||||!!:|||||| !!:!! !! !| LeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysS 204394 : CTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCA : 204453 91 : erMetValProAlaMetTyrTyrAlaLeuMetLeuArgGluAspArgIleLysGluCy : 109 ||!!: ! ! !! !|||! !!.!:!!:!:! !||| |||!:!|||:!!:!! ! erIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSe 204454 : GCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAG : 204510 110 : sValArgHisValGluGluAspTrpArgAsnValArgAspValAsnAspArgArgIle : 128 !:!!!.! !:!!..!...||||||! !.!.!.!! !|||! !||| ||| !||| rLeuAsnThrIleArgArgAspTrpIleGluAlaThrAspGluAsn---ArgLeuIle 204511 : TTTGAACACCATCAGACGCGACTGGATAGAGGCTACGGATGAAAAT---CGGTTGATT : 204564 129 : MetLeuAspAsnAlaArgAlaGlyArgPheIleLeuIleTyrAlaThrLeuPheLeuP : 148 .!.! !...!!.|||!:! !|||||| :!:|||:!: !|||.!! ! !:!!! PheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetT 204565 : TTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGT : 204624 149 : heThrSerGlyPheIleTyrArgLeuIleGlnProIleAlaArgGlyLysThrValIl : 167 :! !.!!|||!!. !|||||| !|||! |||:!: !||||||! !! !|||! yrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleValTh 204625 : ACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTAAC : 204681 168 : e<->GlyAsnIleThrIleArgProLeuValGlnGlyAsnTyrTyrIlePhePheAsp : 185 ! ! !|||:!!||||||||||||||| ! ! !|||::::::||||||::: rProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePheAsn 204682 : ACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaac : 204738 186 : ProGlnGlnSerProAlaTyrGluIleValPheSerLeuHisLeuLeuThrGlyIleI : 205 !|||!::|||||| !|||||||||||||||! !|||!!.:!!:!!.!!|||.!!: GluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheV 204739 : GAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTG : 204798 206 : leIleTyrAlaValMetAlaAlaValCysGlyIleAlaAlaLeuPheThrMetHisAl : 224 !!! !|||||||||!!:::!!.!..!||||||!!:..!|||||||||..!:!:||||| alThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAl 204799 : TTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGC : 204855 225 : aCysGlyGlnLeuGluMetLeuAlaAlaTrpLeuGluAsnLeuSerAsnGluAspGln : 243 ||||.!!..!|||..!!!:|||!.! ! !:!!.!. ||| !:!!:!!! .!. aCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAlaAsp 204856 : GTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCGGAC : 204912 244 : ArgProArgAspCysThrSerAlaGlnLysLeuAlaMetIleIleMetHisHisValA : 263 ! ! !!..! !..! ! ::!|||:!!||| |||:!! :!!!!...!! MetThrGluThrLeuValHis---ArgLysIleAlaAspIleValGluTyrGlnThrL 204913 : ATGACCGAGACACTTGTGCAC---AGGAAGATCGCTGATATTGTTGAATATCAGACGA : 204969 264 : rgIleArgLysPheValAsp : 269 :!|||!:!!:!! |||!!: ysIleLysArg***ValGlu 204970 : AGATAAAGAGGTGAGTGGAA : 204989 vulgar: CbirOr13 12 269 . KQ414889.1 204221 204989 + 365 M 112 336 G 1 0 M 42 126 G 0 3 M 83 249 G 1 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204222 204989 365 + . gene_id 12 ; sequence CbirOr13 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204222 204989 . + . KQ414889.1 exonerate:protein2genome:local exon 204222 204989 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 204222 204989 365 + . alignment_id 12 ; Query CbirOr13 ; Align 204222 13 336 ; Align 204558 126 126 ; Align 204687 168 249 ; Align 204936 252 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 321 Query range: 168 -> 336 Target range: 300189 -> 301797 169 : AsnIleThrIleArgProLeuValGlnGlyAsnTyrTyrIlePhePheAspProGlnG : 188 ||| !||| !!:!||||||!.! ! !..!||| !! |||.!!||| !!||| AsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnT 300190 : AATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAA : 300247 189 : lnSerProAlaTyrGluIleValPheSerLeuHisLeuLeuThrGlyIleIleIleTy : 207 ||||||.!!||||||||||||||| ...||| .!!.!!!.!!!:|||!!:|| hrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTy 300248 : CCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTA : 300304 208 : rAlaValMetAlaAlaValCysGlyIleAlaAlaLeuPheThrMetHisAlaCysGly : 226 | !|||! .!!|||!.!! !.!!:!:||||||:!!|||..!! ||| !|||||| rAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGly 300305 : CAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGA : 300361 227 : GlnLeuGluMetLeuAlaAlaTrpLeuGluAsnLeuSerAsnGluAspGlnArgProA : 246 |||:!!:!!!!:! ! !||| ! ||||||:!!||| !.!...! !..! ! GlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrGlyGluLysA 300362 : CAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGGGAGAGAAGG : 300421 247 : rgAspCysThrSerAlaGlnLysLeuAlaMetIleIleMetHisHisValArgIleAr : 265 !||| .!! !!.!. |||!.!:!:|||:!! !!||||||!:!:!! spAsp------GlyProAspProLeuValValIleValArgAspHisValLysValLe 300422 : ACGAC------GGTCCTGATCCTTTGGTCGTTATCGTTCGAGATCACGTGAAGGTTTT : 300472 266 : g{Ly} >>>> Target Intron 1 >>>> {s}PheValAspArgIleGlnAsp : 273 !{!:} 140 bp {!}|||!.! ! !.!:!!:!!!!: u{Ar}++ ++{g}PheAlaLysAsnValGluGlu 300473 : A{AG}gt.........................ag{A}TTTGCAAAGAACGTTGAGGAA : 300636 274 : IleIleGlyGlyMetCysPheIleGluIleIleAspSerThrLeuIleLeuCysLeuL : 293 ! !:!: !!! !.!.|||!!.:!:||||||.!!!!:|||||||||||||||||||||| ThrLeuArgAspPheCysLeuValGluIlePheGluSerThrLeuIleLeuCysLeuL 300637 : ACTTTGCGTGACTTCTGCTTAGTGGAAATCTTCGAGTCCACGCTGATTTTGTGTTTGC : 300696 294 : euGlyTyrTyrValIleThr >>>> Target Intron 2 >>>> GlyTrpGlu : 302 ||! !|||||| !:!:..! 970 bp ! !|||:!! euGluTyrTyrCysLeuVal++ ++GluTrpGln 300697 : TCGAATACTACTGTTTGGTGgt.........................agGAATGGCAA : 301693 303 : ArgAsnAspAlaLeuSerSerLeuThrTyrPheIleMetLeuIleSerPheThrPheA : 322 !.!!:!|||.!!:!!:!!! !||||||!:!|||! !:!!|||! ||||||||||||| AsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheA 301694 : AATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCA : 301753 323 : snIlePheIleLeuCysTyrIleGlyAspAlaLeuSerThrGln : 336 |||||||||||!!!||||||||||||!!: !|||||| !||| snIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln 301754 : ATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAG : 301797 vulgar: CbirOr13 168 336 . KQ414889.1 300189 301797 + 321 M 79 237 G 2 0 M 16 48 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 33 99 5 0 2 I 0 966 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300190 301797 321 + . gene_id 13 ; sequence CbirOr13 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300190 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300190 300476 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 300616 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300615 300616 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300617 300716 . + . KQ414889.1 exonerate:protein2genome:local exon 300617 300716 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300717 300718 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300717 301686 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301685 301686 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300190 301797 321 + . alignment_id 13 ; Query CbirOr13 ; Align 300190 169 237 ; Align 300427 250 48 ; Align 300618 267 99 ; Align 301687 300 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 319 Query range: 10 -> 268 Target range: 232438 -> 233215 11 : AsnTyrGluAsnAspIleArgTyrThrValGlnValHisArgLeuIleLeuSerLeuI : 30 ||| ! !...||| !..!|||!:!:!!||||||:!!|||! !.!!|||!!!! !! AsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProM 232439 : AACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGA : 232496 31 : leGlyValTrpProIleLeuLysLysSerArgTyrArgGlnThrLeuValLysGlyVa : 49 !:|||!.!|||||| !:!!! !:!!!!! ! !||| !|||:!! ! !:! etGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLe 232497 : TGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACT : 232553 50 : lIleLysIleValCysCysPheLeuLeuSerPheAsnLeuIleProTrpAlaLeuTyr : 68 !:!:!:!:!!..!||| !! !|||:!!! !! !::::!!:!!|||!! !|||!:! uLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPhe 232554 : GTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTC : 232610 69 : MetPheLeuIleValAspThrLeuThrGlyArgLeuLysMetLeuGlyAlaLeuCysP : 88 !!:.!.!!! !! ! !:!||| !! !|||:!!||| :!!||| !!:!! !! IleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerH 232611 : ATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTC : 232670 89 : heTyrSerMetValProAlaMetTyrTyrAlaLeuMetLeuArgGluAspArgIleLy : 107 !!:! !|||! ! ! !! |||! !..!|||:!! !!:!! !:!! !||| isPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLe 232671 : ACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCT : 232727 108 : sGluCysValArgHisValGluGluAspTrpArgAsnValArgAspValAsnAspArg : 126 ! ||||||..!!!.|||:!!:!!|||||||||||||||!:! ! ! ! !!||| uTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArg 232728 : CTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGT : 232784 127 : ArgIleMetLeuAspAsnAlaArgAlaGlyArgPheIleLeuIleTyrAlaThrLeuP : 146 !:!:|||||| ! ||||||!:! !||||||! ||| ! ! !|||.!!!!!! AspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheC 232785 : GATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTT : 232844 147 : heLeuPheThrSerGlyPheIleTyrArgLeuIleGlnProIleAlaArgGlyLysTh : 165 !:!! !|||.!!! ! ! ! !!..!:!!:!! ! !:!! !! !.!!! ! ysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPh 232845 : GCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTT : 232901 166 : rValIleGlyAsn<-><->IleThrIleArgProLeuValGlnGlyAsnTyrTyrIle : 182 ! !:!:|||||| !:!!!!: !|||||| ! ! !||| ! eTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLys 232902 : CTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAG : 232958 183 : PhePheAspProGlnGlnSerProAlaTyrGluIleValPheSerLeuHisLeuLeuT : 202 .!..!.||| !!::! ||||||.!! !!||||||:!!||| !|||!!.! !|||: LeuMetAspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuS 232959 : CTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCT : 233018 203 : hrGlyIleIleIleTyrAlaValMetAlaAlaValCysGlyIleAlaAlaLeuPheTh : 221 !!|||.!!|||:!: !!:!!|||! !.!!.!!.!||||||:!!!.!|||:!!.!..! erGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAl 233019 : CCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGC : 233075 222 : rMetHisAlaCysGlyGlnLeuGluMetLeuAlaAlaTrpLeuGluAsnLeuSerAsn : 240 !|||||||||||||||||||||.!.:!!:!! !:!! |||!!::!!||| ! aMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuVal--- 233076 : GATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTG--- : 233132 241 : GluAspGlnArgProArgAspCysThrSerAlaGlnLysLeuAlaMetIleIleMetH : 260 !!:! :!! !!! !..!!!: ! ..!:!! !::!||||||!.!.!.|||:!: !| AspAlaLysGlyGlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluH 233133 : GACGCGAAAGGGCAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGC : 233189 261 : isHisValArgIleArgLysPheVal : 268 |||||:!!|||! ! !!:!!:!:!! isHisLeuArgThrLeuArgTyrLeu 233190 : ATCATTTGCGTACATTAAGGTATTTG : 233215 vulgar: CbirOr13 10 268 . KQ414889.1 232438 233215 + 319 M 159 477 G 0 6 M 70 210 G 1 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232439 233215 319 + . gene_id 14 ; sequence CbirOr13 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232439 233215 . + . KQ414889.1 exonerate:protein2genome:local exon 232439 233215 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 232439 233215 319 + . alignment_id 14 ; Query CbirOr13 ; Align 232439 11 477 ; Align 232922 170 210 ; Align 233132 241 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 315 Query range: 17 -> 264 Target range: 266637 -> 267384 18 : TyrThrValGlnValHisArgLeuIleLeuSerLeuIleGlyValTrpProIleLeuL : 37 |||!:!:!!|||:!!:!!|||! !.!!|||!.!! !||||||!.!|||||| |||. TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuS 266638 : TACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGT : 266695 38 : ysLysSerArgTyrArgGlnThrLeuValLysGlyValIleLysIleValCysCysPh : 56 .! !!! ! ! ! !:!! !:!!|||... !!.!:!:! :!!:!!|||! !! erLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCy 266696 : CACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTG : 266752 57 : eLeuLeuSerPheAsnLeuIleProTrpAlaLeuTyrMetPheLeuIleValAspThr : 75 !! !:!! !|||!.!:!!||||||!! !!!!:!!:!: !!||| ! !!!:!:! sSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSer 266753 : CTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGT : 266809 76 : LeuThrGlyArgLeuLysMetLeuGlyAlaLeuCysPheTyrSerMetValProAlaM : 95 :!! ! !!:!:!!|||:!!!!!||| !!||| !! !!::! !:!:! ! ! !! IleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleA 266810 : ATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTA : 266869 96 : etTyrTyrAlaLeuMetLeuArgGluAspArgIleLysGluCysValArgHisValGl : 114 ||| !.!!|||:!!||||||... ! ..!|||:::! ||||||..!|||:!!:! snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 266870 : ACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCA : 266926 115 : uGluAspTrpArgAsnValArgAspValAsnAspArgArgIleMetLeuAspAsnAla : 133 ! !|||||||||! !|||! ! !.!.|||!:!!:!:!:|||||| ! |||||| nThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAla 266927 : AACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCG : 266983 134 : ArgAlaGlyArgPheIleLeuIleTyrAlaThrLeuPheLeuPheThrSerGlyPheI : 153 ||| !||||||!:!||| !|||!:!..!.!! !|||:!! !.!!! !.!! ArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuG 266984 : AGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCG : 267043 154 : leTyrArgLeuIleGlnProIleAlaArgGlyLysThrValIleGlyAsnIleThr<- : 172 !||| !!:!!||| ! !!.!!.!!! ! !! ..!! !:!!|||||| ||| lyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrAr 267044 : GCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAG : 267100 173 : ><->IleArgProLeuValGlnGlyAsnTyrTyrIlePhePheAspProGlnGlnSer : 189 :!!!.!! !||| ! !.! !||| ! ! .!..!!! !.!. ||| gIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSer 267101 : GATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGC : 267157 190 : ProAlaTyrGluIleValPheSerLeuHisLeuLeuThrGlyIleIleIleTyrAlaV : 209 |||.!! !!|||||||||.!! !! !!!.!!!:!!:!!|||.!!|||:!: !!:!! ProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerS 267158 : CCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGA : 267217 210 : alMetAlaAlaValCysGlyIleAlaAlaLeuPheThrMetHisAlaCysGlyGlnLe : 228 !:!:!.!!.!!.!! !.!!:!!||||||:!!|||.!! ||||||||||||||||| erValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLe 267218 : GCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCT : 267274 229 : uGluMetLeuAlaAlaTrpLeuGluAsnLeuSerAsnGluAspGlnArgProArgAsp : 247 |...:!!||| ! !|||:!!:!!.!.!!! !|||..!..!::! ! !!.! ! uSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLys 267275 : GAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAG : 267331 248 : CysThrSerAlaGlnLysLeuAlaMetIleIleMetHisHisValArgIle : 264 !..!!!! !.!.|||:!!!.!:!!:!!:!! ||||||:!!|||:!! AsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgVal 267332 : AACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTT : 267384 vulgar: CbirOr13 17 264 . KQ414889.1 266637 267384 + 315 M 154 462 G 0 6 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266638 267384 315 + . gene_id 15 ; sequence CbirOr13 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266638 267384 . + . KQ414889.1 exonerate:protein2genome:local exon 266638 267384 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266638 267384 315 + . alignment_id 15 ; Query CbirOr13 ; Align 266638 18 462 ; Align 267106 172 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 264 Query range: 265 -> 404 Target range: 257478 -> 258738 266 : LysPheValAspArgIleGlnAspIleIleGlyGlyMetCysPheIleGluIleIleA : 285 !..|||:!!... !|||:!!!!::!:!!:..! !!!!:||||||:!!|||:!:.!! SerPheIleSerTyrIleGluGluValMetAsnArgIleCysPheLeuGluLeuPheA 257479 : AGTTTCATATCATATATCGAGGAAGTGATGAACCGAATATGTTTTTTAGAGTTGTTTA : 257536 286 : spSerThrLeuIleLeuCysLeuLeuGlyTyrTyrValIleThr >>>> Target : 300 !!!|||||| !:!!|||:!!||||||||||||:!!:!!.!! 68 rgCysThrLeuAlaIleCysMetLeuGlyTyrTyrIleLeuAla++ 257537 : GATGCACGCTGGCTATATGCATGCTGGGATACTACATTCTTGCGgt............ : 257583 301 : Intron 1 >>>> GlyTrpGluArgAsnAspAlaLeuSerSerLeuThrTyrPheI : 314 4 bp !|||...! !...||| ::: :::||||||! ++GluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheM 257584 : .............aggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTA : 258307 315 : leMetLeuIleSerPheThrPheAsnIlePheIleLeuCysTyrIleGlyAspAlaLe : 333 !:!!:|||||||||...:::||||||||||||::::::||||||||||||!!: !|| etIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLe 258308 : TGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATT : 258364 334 : uSerThrGln >>>> Target Intron 2 >>>> GlySerLysValHisThrT : 343 |!!! !||| 90 bp !!!.!|||||| ! !. uThrGluGln++ ++CysLysLysValGlyAspV 258365 : AACAGAACAGgt.........................agTGCAAGAAAGTTGGCGACG : 258484 344 : hrSerCysThrIleAspTrpTyrCysLeuSerAsnLysGluAlaArgTyrLeuIleLe : 362 .! !! !! !! !|||||||||! !||| !!:!!|||..! !! ! !!|||||||| alValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLe 258485 : TGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTT : 258541 363 : uIleIleAlaThrAlaSerHisProThrLysLeuThrProGlyLysValMetAspLeu : 381 |:!!|||||| !:!!||| !..!:!!:!!||| !!|||||| ... ::! uValIleAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePheHisMet 258542 : GGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatG : 258598 382 : SerPheSerSerPheGlyThr >>>> Target Intron 3 >>>> IleValAr : 391 |||.!!! !!!!|||.!! ! 69 bp :!!:!!!: SerIleTyrThrPheSerAsp++ ++ValIleLy 258599 : TCCATTTACACATTCAGCGATgt.........................agGTAATAAA : 258697 392 : gThrAlaMetThrTyrLeuAsnLeuLeuArgThrValThr : 404 !|||:!!.!..!!|||||||||||||||||| !|||:!! sThrSerPheAlaTyrLeuAsnLeuLeuArgGlnValSer 258698 : AACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGTATCG : 258738 vulgar: CbirOr13 265 404 . KQ414889.1 257478 258738 + 264 M 34 102 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 257479 258738 264 + . gene_id 16 ; sequence CbirOr13 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 257479 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257479 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 257479 258738 264 + . alignment_id 16 ; Query CbirOr13 ; Align 257479 266 102 ; Align 258265 300 111 ; Align 258466 337 156 ; Align 258691 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 209 Query range: 300 -> 386 Target range: 206053 -> 206392 301 : TrpGluArgAsnAspAlaLeuSerSerLeuThrTyrPheIleMetLeuIleSerPheT : 320 ||||||!.!|||:!!.!! !:!! !:!!..!|||.!!! :!!! !||||||! !| TrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerCysT 206054 : TGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTTGTA : 206111 321 : hrPheAsnIlePheIleLeuCysTyrIleGlyAspAlaLeuSerThrGln >>>> T : 337 ||||| !:!!|||||||||||||||||||||.!. !|||! ! !||| hrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206112 : CATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt...... : 206164 338 : arget Intron 1 >>>> GlySerLysValHisThrThrSerCysThrIleAspT : 349 81 bp ..! ! ||| !||||||||||||:!::!!| ++AsnHisValValGlyLeuThrSerCysThrValAsnT 206165 : ...................agAACCACGTCGTGGGATTGACATCTTGCACGGTGAATT : 206279 350 : rpTyrCysLeuSerAsnLysGluAlaArgTyrLeuIleLeuIleIleAlaThrAlaSe : 368 ||||| !!||| !!|||!:!.!.||||||! !:!!|||||||||||||||! !:!!!: rpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSerAs 206280 : GGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTCTAA : 206336 369 : rHisProThrLysLeuThrProGlyLysValMetAspLeuSerPheSerSerPhe : 386 !:!!|||! !||||||||| !!||||||:!!.!.!!::!!|||!!.:!!|||||| nTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206337 : TTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206392 vulgar: CbirOr13 300 386 . KQ414889.1 206053 206392 + 209 M 36 108 5 0 2 I 0 77 3 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206054 206392 209 + . gene_id 17 ; sequence CbirOr13 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206054 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206054 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206392 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206392 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206054 206392 209 + . alignment_id 17 ; Query CbirOr13 ; Align 206054 301 108 ; Align 206243 337 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 200 Query range: 12 -> 195 Target range: 294672 -> 295227 13 : GluAsnAspIleArgTyrThrValGlnValHisArgLeuIleLeuSerLeuIleGlyV : 32 ..!||||||:!: ! !!!:!:!!:!! ! !||| !:!:|||!.!! !||||||: ArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyL 294673 : AGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTC : 294730 33 : alTrpProIleLeuLysLysSerArgTyrArgGlnThrLeuValLysGlyValIleLy : 51 !!||||||:!!:!! ! !.. !! ! !!:!! !!.! !||| ..!:!!||| euTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLe 294731 : TTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCT : 294787 52 : sIleValCysCysPheLeu<->LeuSerPheAsnLeuIleProTrpAlaLeuTyrMet : 69 !|||!.!!! ||| ||| :!! !||| !|||:!:|||!! !.!! !!:! uIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCys 294788 : GATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGT : 294844 70 : PheLeuIleValAspThrLeuThrGlyArgLeuLysMetLeuGlyAlaLeuCysPheT : 89 ! !!! !||| ...::: ::!:!!|||:!:|||||| !!:!! !:!! ValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrS 294845 : GTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACT : 294904 90 : yrSerMetValProAlaMetTyrTyrAlaLeuMetLeuArgGluAspArgIleLysGl : 108 !! !:!: ! ! !! !||| !..!|||:!:|||!:! ! ! !.!!|||.! erMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHi 294905 : CTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCA : 294961 109 : uCysValArgHisValGluGluAspTrpArgAsnValArgAspValAsnAspArgArg : 127 .|||:!!..! !!:!!|||.!.||||||!:! :!! !:!! !.!. !!||| ! sCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAla 294962 : TTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCG : 295018 128 : IleMetLeuAspAsnAlaArgAlaGlyArgPheIleLeuIleTyrAlaThrLeuPheL : 147 ||||||:!! ! ||||||! !!.! !!:! !!: !:!! ! !|||:!!.!.: IleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleI 295019 : ATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAA : 295078 148 : euPheThrSerGlyPheIleTyrArgLeuIleGlnPro<->IleAlaArgGlyLysTh : 165 !!!:!!:!|||!.! ! |||!.! !||| ||| ...:::...... ! leTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGl 295079 : TCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGA : 295135 166 : rValIleGlyAsnIleThrIleArgProLeuValGlnGlyAsnTyrTyrIlePhePhe : 184 ! !! !|||! !||||||||| !!||| ! !..!||| ! :!!||| ! uAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheVal 295136 : GAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTA : 295192 185 : AspProGlnGlnSerProAlaTyrGluIleVal : 195 ||| !! ! ...||||||.!!|||||||||:!! AspAlaTyrSerSerProThrTyrGluIleIle 295193 : GACGCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: CbirOr13 12 195 . KQ414889.1 294672 295227 + 200 M 45 135 G 0 3 M 102 306 G 0 3 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294673 295227 200 + . gene_id 18 ; sequence CbirOr13 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294673 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294673 295227 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294673 295227 200 + . alignment_id 18 ; Query CbirOr13 ; Align 294673 13 135 ; Align 294811 58 306 ; Align 295120 160 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 300 -> 404 Target range: 272839 -> 273302 301 : TrpGluArgAsnAspAlaLeuSerSerLeuThrTyrPheIleMetLeuIleSerPheT : 320 ||| !:!!||| !! !||| ! !|||||||||!!:!!:|||||||||.!.| TrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerMetT 272840 : TGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCATga : 272897 321 : hrPheAsnIlePheIleLeuCysTyrIleGly >>>> Target Intron 1 >>> : 331 |||||||||||||||||::!|||||||||||| 70 bp hrPheAsnIlePheIleValCysTyrIleGly+- 272898 : cttttaacatttttatagtATGTTACATCGGCga........................ : 272932 332 : > AspAlaLeuSerThrGlnGlySerLysValHisThrThrSerCysThrIleAspT : 349 ||| ||| ...|||::: !..! !! !! !! :!!| -+LysLysAsnSer***GlnCysLysLysIleGlyGluValValTyrMetThrAsnT 272933 : .cgaagaaaaattcttaacagtgtaaaaaaattggcGAGGTAGTTTACATGACGAACT : 273054 350 : rpTyrCysLeuSerAsnLysGluAlaArgTyrLeuIleLeuIleIleAlaThrAlaSe : 368 |||||! !||| !!..!|||!!: !! ! !!|||||||||||||||:!!! !..!|| rpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCysSe 273055 : GGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATGCAG : 273111 369 : rHisProThrLysLeuThrProGlyLysValMetAspLeuSerPheSerSerPheGly : 387 | ! !! !|||:!!||| !!|||!:!:!!:!: !:!!||| ! ! !!!!|||||| rValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPheGly 273112 : TGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTCGGC : 273168 388 : Thr >>>> Target Intron 2 >>>> IleValArgThrAlaMetThrTyrLe : 397 ! 81 bp ::::!!!:!!:!|||.!..!!||||| Asp++ ++ValMetLysSerAlaPheAlaTyrLe 273169 : GATgt.........................aggtGATGAAAAGTGCGTTCGCGTACTT : 273279 398 : uAsnLeuLeuArgThrValThr : 404 ||||:!!|||||| !..!||| uAsnMetLeuArgGlnThrThr 273280 : AAATATGCTACGACAAACGACA : 273302 vulgar: CbirOr13 300 404 . KQ414889.1 272839 273302 + 161 M 30 90 5 0 2 I 0 66 3 0 2 M 58 174 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272840 273302 161 + . gene_id 19 ; sequence CbirOr13 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272840 272929 . + . KQ414889.1 exonerate:protein2genome:local exon 272840 272929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272930 272931 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 272930 272999 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 272998 272999 . + . intron_id 0 ; splice_site "cg" KQ414889.1 exonerate:protein2genome:local cds 273000 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273000 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272840 273302 161 + . alignment_id 19 ; Query CbirOr13 ; Align 272840 301 90 ; Align 273000 331 174 ; Align 273255 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 261 -> 340 Target range: 297279 -> 297583 262 : ValArgIleArgLysPheValAspArgIleGlnAspIleIleGlyGlyMetCysPheI : 281 :::...||| :::!:!..! |||||| !:!! :!!! ! !:!:||||||: IleAsnIlePheArgTyrThrArgArgIleLeuAsnAlaLeuGluThrLeuCysPheV 297280 : ataaatattttcaggTACACGAGACGAATCTTGAACGCGTTAGAGACACTATGTTTCG : 297337 282 : leGluIleIleAspSerThrLeuIleLeuCysLeuLeuGlyTyrTyrValIleThr : 300 !:|||:!!:!: |||!:!:!!:!:|||||||||! !! ! !! ! !:!! ! alGluValLeuLeuSerSerIleLeuLeuCysLeuCysGluAsnLeuCysValGlu++ 297338 : TGGAAGTACTGCTGTCCAGCATATTGTTGTGTCTTTGCGAGAACCTCTGCGTAGAGgt : 297394 301 : >>>> Target Intron 1 >>>> GlyTrpGluArgAsnAspAlaLeuSerSerL : 310 67 bp ||||||:!!! !:!!||| !:!!! !.!!: ++GlyTrpLysThrHisAspMetIlePheGlyV 297395 : .........................aggGATGGAAAACTCACGATATGATTTTTGGGG : 297491 311 : euThrTyrPheIleMetLeuIleSerPheThrPheAsnIlePheIleLeuCysTyrIl : 329 !!||| ! ! !.!.:!!:!!|||.!!|||||||||||||||:!!||||||:!! alThrIleGlyGlyPheMetLeuSerIleThrPheAsnIlePheValLeuCysHisAl 297492 : TAACGATCGGCGGTTTCATGCTTTCGATCACTTTTAATATATTCGTATTATGTCATGC : 297548 330 : eGlyAspAlaLeuSerThrGlnGlySerLysVal : 340 !|||!!: !||| ! !:!!! ! !!|||||| aGlyGluLeuLeuValGluGluValProLysVal 297549 : AGGTGAACTTCTTGTCGAGGAGGTACCGAAAGTG : 297583 vulgar: CbirOr13 261 340 . KQ414889.1 297279 297583 + 139 M 38 114 5 0 2 I 0 63 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297280 297583 139 + . gene_id 20 ; sequence CbirOr13 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 297280 297393 . + . KQ414889.1 exonerate:protein2genome:local exon 297280 297393 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 297394 297395 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 297394 297460 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 297459 297460 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 297461 297583 . + . KQ414889.1 exonerate:protein2genome:local exon 297461 297583 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297280 297583 139 + . alignment_id 20 ; Query CbirOr13 ; Align 297280 262 114 ; Align 297461 300 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 300 -> 341 Target range: 291371 -> 291494 301 : TrpGluArgAsnAspAlaLeuSerSerLeuThrTyrPheIleMetLeuIleSerPheT : 320 ||||||!!!!:!|||:!!:!!.!!! !||||||||| !!! !:!:|||! !||||||| TrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerPheT 291372 : TGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTTTCA : 291429 321 : hrPheAsnIlePheIleLeuCysTyrIleGlyAspAlaLeuSerThrGlnGlySerLy : 339 |||||||||||.!.|||!!!||||||:!!|||!!: !||| ! !|||! !|||! hrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGlnValSerTh 291430 : CTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAGGTAAGTAC : 291486 340 : sValHis : 341 ! !||| rGlyHis 291487 : TGGTCAC : 291494 vulgar: CbirOr13 300 341 . KQ414889.1 291371 291494 + 113 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291372 291494 113 + . gene_id 21 ; sequence CbirOr13 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 291372 291494 . + . KQ414889.1 exonerate:protein2genome:local exon 291372 291494 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291372 291494 113 + . alignment_id 21 ; Query CbirOr13 ; Align 291372 301 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 300 -> 336 Target range: 224326 -> 224434 301 : TrpGluArgAsnAspAlaLeuSerSerLeuThrTyrPheIleMetLeuIleSerPheT : 320 |||... ::: !! ! !|||:!!:!!||||||||||||:!:|||!!:|||...| TrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerLeuT 224327 : tggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtctta : 224384 321 : hrPheAsnIlePheIleLeuCysTyrIleGlyAspAlaLeuSerThrGln : 336 |||||||||||||||||...||||||||||||!!: !:!!:!! !||| hrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln 224385 : ctttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcag : 224434 vulgar: CbirOr13 300 336 . KQ414889.1 224326 224434 + 111 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224327 224434 111 + . gene_id 22 ; sequence CbirOr13 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224327 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224327 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224327 224434 111 + . alignment_id 22 ; Query CbirOr13 ; Align 224327 301 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 265 -> 299 Target range: 275207 -> 275309 266 : LysPheValAspArgIleGlnAspIleIleGlyGlyMetCysPheIleGluIleIleA : 285 !..|||:!!! ||||||:!!|||:!:!!:..! !!!!:||||||!!:|||:!:.!! SerPheIleAlaArgIleGluAspValMetAsnArgIleCysPheMetGluLeuPheL 275208 : AGTTTCATAGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAATTGTTCA : 275265 286 : spSerThrLeuIleLeuCysLeuLeuGlyTyrTyrValIleThr : 299 ! !!!|||||| !:!!|||:!!||||||||||||:!!:!!||| ysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleLeuThr 275266 : AGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTCTCACG : 275309 vulgar: CbirOr13 265 299 . KQ414889.1 275207 275309 + 101 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 275208 275309 101 + . gene_id 23 ; sequence CbirOr13 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 275208 275309 . + . KQ414889.1 exonerate:protein2genome:local exon 275208 275309 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 275208 275309 101 + . alignment_id 23 ; Query CbirOr13 ; Align 275208 266 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 826 Query range: 14 -> 371 Target range: 232447 -> 235147 15 : ArgAspAsnAspTyrSerLeuGlnValAsnArgTrpLeuLeuLysSerIleGlyAlaT : 34 |||||| !!!!:||||||:!!|||||||||||||||!!!|||! ! !!!!:||||||| ArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaT 232448 : CGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCAT : 232505 35 : rpProGluSerSerMetLysTyrSerValThrArgAsnIleLeuLysThrValLeuAr : 53 |||||... !!!! :!! !||| !.!!!:!.!.:!!||| !! !:!!||||| rpProArgValThr---GluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuAr 232506 : GGCCGCGTGTTACA---GAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAG : 232559 54 : gLeuThrCysHisLeuLeuIleAlaPheThrValValProSerMetLeuTyrIleIle : 72 |||||||||||||! !|||!!: !! !:!!:!!||||||!!!!!:|||!:!|||:!: gLeuThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeu 232560 : ACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTG : 232616 73 : PheGluGluLysAspPheArgLeuArgLeuLysAlaValGlyProPheSerHisCysL : 92 ||||||!!:! !..!.!...! !|||:!!|||:!!:!!||||||.!.||||||! !| PheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheL 232617 : TTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTC : 232676 93 : euMetGlyGlyIleAsnTyrCysSerLeuLeuHisHisGlySerHisIleArgArgSe : 111 ||||||||! !:!:|||||||||!!!|||||| ! !.!!:! !!|||! ! !!! euMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCy 232677 : TGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTG : 232733 112 : rIleGluHisMetGluAsnAspTrpArgMetAlaLysArgGluHisAspArgGluVal : 130 !:!:|||!!.:!!:!!.!.|||||||||! !.!|||!:! ! !!|||!!::!! sValGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeu 232734 : CGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTG : 232790 131 : MetLeuArgAsnAlaArgIleGlyArgThrIleAlaGlyValCysAlaLeuIleMetG : 150 ||||||!:!||||||!:!:!!||||||:!!|||||| !!:!!..!|||!!! !|||! MetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetH 232791 : ATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGC : 232850 151 : lnGlyGlyIleLeuSerTyrAsnLeuAlaArgGlyMetSerProIleIleGluValIl : 169 !. !|||:!! !||| !!.!.:!!!.!! !|||:!: !! !! !! !:! isThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrVa 232851 : ACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGT : 232907 170 : eGlyAsnGluThrValAlaPheGlyArgLeuProCysProSerPheAsnMetIleVal : 188 :|||||||||!:! !:!!.!. !! !||||||||| !!! !!:!!..! !:!::!! lGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMet 232908 : GGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATG : 232964 189 : AspThrArgPheSerProValTyrGluValValLeuValPheGlnPheLeuSerIleI : 208 ||||||||||||||||||..! !!|||:!!:!!!!!|||.!.|||! !|||||| . AspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyP 232965 : GACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGT : 233024 209 : leValValAsnAsnValThrIleGlyGlyCysGlyLeuThrAlaValPheAlaMetHi : 227 !!:!!||||||::!||||||:!:|||!.!||||||||| !||||||.!.|||||||| heIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHi 233025 : TCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCA : 233081 228 : sAlaCysGlyGlnLeuAsnMetValMetLeuArgLeuHisGluLeuValAsnGluLys : 246 |||||||||||||||||||:!!||||||! !!:!||| !!!!:||||||:!!! !||| sAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLys 233082 : CGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAA : 233138 247 : Arg{Gl} >>>> Target Intron 1 >>>> {u}PheLeuSerArgMetGluT : 255 !!{.!} 1378 bp {.}|||:!! !!!.!!!:|||! Gly{Hi}+- ++{s}PheIleArgAsnIleGluA 233139 : GGG{CA}gg.........................ag{T}TTTATACGGAATATAGAGA : 234543 256 : hrValIleArgGlnIleCysPheValGluLeuValGlyCysThrPheAsnLeuCysMe : 274 .!|||!!:!.!! !||||||.!.|||||||||||||||||||||!!.|||:!!||||| snValMetAsnLeuIleCysLeuValGluLeuValGlyCysThrLeuAsnMetCysMe 234544 : ACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACGTTGAACATGTGCAT : 234600 275 : tLeuGlyTyrTyrThrIleThr >>>> Target Intron 2 >>>> GluLeuH : 284 ||||! !|||||| !:!!||| 189 bp tLeuGluTyrTyrLeuLeuThr++ ++------- 234601 : GCTCGAGTATTATTTACTCACGgt.........................ag------- : 234813 285 : isGluGluSerAlaAsnThrIleIleSerTyrIleMetValLeuIleSerMetMetPh : 303 |||:!:||| ... ::: !||||||:!!!!:|||! !:!:||||||! || --GluLysSerLysGluLysLeuAlaSerTyrValIleValTyrValSerMetThrPh 234814 : --GAAAAgtcgaaggaaaaattagCTTCATACGTCATCGTGTACGTGTCCATGACATT : 234867 304 : eAsnIlePheIlePheCysPhePheGlyGluLeuValMetAspGln >>>> Targe : 319 |||||||||||||||||||::!.!!|||||| !:!!! !!:||| eAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGln++ 234868 : taatatattcatattttgttACATCGGAGAGACGCTTACAGAGCAGgt.......... : 234917 320 : t Intron 3 >>>> CysLysLysValGlyGluAlaAlaTyrMetThrAsnTrpTy : 332 74 bp |||! |||||||||||| !!.!|||||||||.!.||||| ++CysThrLysValGlyGluLysValTyrMetThrGluTrpTy 234918 : ...............agTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTA : 235028 333 : rTyrLeuProArgLysThrValPheAlaLeuIleLeuIleIleLeuArgSerArgIle : 351 | ||||||!.!||||||!.!.!!!.!|||:!!:!!||||||! !||||||!!!!!: rArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMet 235029 : CCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATG : 235085 352 : ThrValLysIleThrAlaAlaLysValPheHisMetSerIleAlaThrPheGlyValV : 371 ..!:!!||||||||||||!.!||| !!.!.!!.||||||:!!||||||||||||! !| ValIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspV 235086 : GTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATG : 235145 372 : al : 371 || al 235146 : TG : 235147 vulgar: CbirOr17PSE 14 371 . KQ414889.1 232447 235147 + 826 M 24 72 G 1 0 M 208 624 S 0 2 5 0 2 I 0 1374 3 0 2 S 1 1 M 33 99 5 0 2 I 0 185 3 0 2 G 3 0 M 34 102 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232448 235147 826 + . gene_id 1 ; sequence CbirOr17PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232448 233145 . + . KQ414889.1 exonerate:protein2genome:local exon 232448 233145 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233146 233147 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local intron 233146 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232448 235147 826 + . alignment_id 1 ; Query CbirOr17PSE ; Align 232448 15 72 ; Align 232520 40 624 ; Align 234525 249 99 ; Align 234813 285 102 ; Align 234989 319 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 754 Query range: 11 -> 380 Target range: 256631 -> 258651 12 : ThrTyrArgArgAspAsnAspTyrSerLeuGlnValAsnArgTrpLeuLeuLysSerI : 31 !.!!:!!:!!!! !!!:!|||||||||||||||:!!|||||||||!!!|||||| !!| AsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 256632 : AATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTA : 256689 32 : leGlyAlaTrpProGluSerSerMetLysTyrSerValThrArgAsnIleLeuLysTh : 50 |||||||||||||| |||||| ! !!!:!! !||||||:!! ..!! leGlyAlaTrpProProSerSerSerThrThrThrLeuGluArgAsnVal---SerIl 256690 : TAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCGAAACGTT---TCGAT : 256743 51 : rValLeuArgLeuThrCysHisLeuLeuIleAlaPheThrValValProSerMetLeu : 69 !||||||!.!:!!..!|||:!! !! !||| !||||||:!!:!!|||!!!:!!||| eValLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIleProCysLeuLeu 256744 : CGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTC : 256800 70 : TyrIleIlePheGluGluLysAspPheArgLeuArgLeuLysAlaValGlyProPheS : 89 :!!:!!.!!.!!!!:!!: ! ..!||| :::::::::||| ||||||.!.| HisValPheLeuAspAspAspSerPheTyrMetLysValLysAsnPheGlyProMetS 256801 : CATGTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGA : 256860 90 : erHisCysLeuMetGlyGlyIleAsnTyrCysSerLeuLeuHisHisGlySerHisIl : 108 |||||!! :!!!!:.!! !! !|||||| ! !|||||| !!.|||!.! !!|| erHisTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIl 256861 : GCCATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACAT : 256917 109 : eArgArgSerIleGluHisMetGluAsnAspTrpArgMetAlaLysArgGluHisAsp : 127 |||| !!!!:!!||||||!!:|||!..||||||||||||!.!!:!|||||| ! ||| eArgTyrCysValGluHisIleGluThrAspTrpArgMetValArgArgGluLysAsp 256918 : ACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGAT : 256974 128 : ArgGluValMetLeuArgAsnAlaArgIleGlyArgThrIleAlaGlyValCysAlaL : 147 !:!:!!||||||:!!!:!|||||||||.!!|||||| !:!:||| ! !!|||||| GlnGlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaA 256975 : CAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAG : 257034 148 : euIleMetGlnGlyGlyIleLeuSerTyrAsnLeuAlaArgGlyMetSerProIleIl : 166 !|||||||||.!!|||:::... ::: ::!:!! !!.!:!!!:! !! || laIleMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAsnThrGluIl 257035 : CTATCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGAT : 257091 167 : eGluValIleGlyAsnGluThrValAlaPheGlyArgLeuProCysProSerPheAsn : 185 | !:!:||||||||||||..! ! ! !! !|||||| ! !! !!:!!!. eIleHisValGlyAsnGluThrThrIleValArgValLeuProValThrValTyrLys 257092 : AATTCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAG : 257148 186 : MetIleValAspThrArgPheSerProValTyrGluValValLeuValPheGlnPheL : 205 ! !:!::!!:!!..! ! ||||||..! !!|||:!!|||:!! !!.!.||| !! LysLeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheMetGlnThrT 257149 : AAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTT : 257208 206 : euSerIleIleValValAsnAsnValThrIleGlyGlyCysGlyLeuThrAlaValPh : 224 !||| |||:!!!.!!.!!.! !|||:!!.!! !! !.!!|||.!!|||||||| rpSerSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAlaAlaValPh 257209 : GGTCGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTT : 257265 225 : eAlaMetHisAlaCysGlyGlnLeuAsnMetValMetLeuArgLeuHisGluLeuVal : 243 ||||! ||||||! !|||||||||!.!:!!:!!|||! ! !!:!! |||!!!||| eAlaThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGluPheVal 257266 : TGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTG : 257322 244 : AsnGluLysArgGluPheLeuSerArg >>>> Target Intron 1 >>>> Me : 253 ||||||..!|||.!. ... 142 bp !! AsnGluSerArgAsnArgGluLysThr-+ +-Il 257323 : AATGAGTCGAGGAATCGggagaaaacgtt.........................atAT : 257494 254 : tGluThrValIleArgGlnIleCysPheValGluLeuValGlyCysThrPheAsnLeu : 272 :||| !|||!!:!.!!:!|||||||||:!!|||||| !! !!||||||.!. !:!! eGluGluValMetAsnArgIleCysPheLeuGluLeuPheArgCysThrLeuAlaIle 257495 : CGAGGAAGTGATGAACCGAATATGTTTTTTAGAGTTGTTTAGATGCACGCTGGCTATA : 257551 273 : CysMetLeuGlyTyrTyrThrIleThr >>>> Target Intron 2 >>>> Gl : 282 ||||||||||||||||||! !:!!.!! 684 bp || CysMetLeuGlyTyrTyrIleLeuAla++ ++Gl 257552 : TGCATGCTGGGATACTACATTCTTGCGgt.........................agga : 258265 283 : uLeuHisGluGluSerAlaAsnThrIleIleSerTyrIleMetValLeuIleSerMet : 301 |! ! ! !:::... ......::: ||||||.!!|||:!!|||||||||::: uTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheMetIleLeuIleSerLeu 258266 : ATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTATGATACTCATATcactt : 258322 302 : MetPheAsnIlePheIlePheCysPhePheGlyGluLeuValMetAspGln >>>> : 319 ||||||||||||:::...|||::!.!.||||||:!!:!!! !!:||| SerPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluGln++ 258323 : tctttcaatatttttgtaatatgttACATAGGTGAAATATTAACAGAACAGgt..... : 258378 320 : Target Intron 3 >>>> CysLysLysValGlyGluAlaAlaTyrMetThrAsn : 330 90 bp |||||||||||||||!!:!.!!.!|||||||||:!! ++CysLysLysValGlyAspValValTyrMetThrAsp 258379 : ....................agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGAC : 258499 331 : TrpTyrTyrLeuProArgLysThrValPheAlaLeuIleLeuIleIleLeuArgSerA : 350 ||||||||||||||| !|||! !:!!.!!! !|||||||||:!!||| !||||||! TrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLeuValIleAlaArgSerS 258500 : TGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGA : 258559 351 : rgIleThrValLysIleThrAlaAlaLysValPheHisMetSerIleAlaThrPheGl : 369 !!:!:..!|||:!!|||||||||...||| ||||||||||||||| !||||||.! erValValValGlnIleThrAlaGlyLysPhePheHisMetSerIleTyrThrPheSe 258560 : GCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatGTCCATTTACACATTCAG : 258616 370 : yValValMetGlnLysAspSerLeuAlaTyrIle : 380 !! !|||! ! !! !:!! !|||||| rAspValSerTyrLeuArgLeuIleIleTyrIle 258617 : CGATGTGAGTTATCTTCGTTTGATTATTTATATA : 258651 vulgar: CbirOr17PSE 11 380 . KQ414889.1 256631 258651 + 754 M 36 108 G 1 0 M 204 612 5 0 2 I 0 138 3 0 2 M 29 87 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256632 258651 754 + . gene_id 2 ; sequence CbirOr17PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256632 257351 . + . KQ414889.1 exonerate:protein2genome:local exon 256632 257351 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 257352 257353 . + . intron_id 1 ; splice_site "tt" KQ414889.1 exonerate:protein2genome:local intron 257352 257493 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257492 257493 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 257494 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257494 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258651 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258651 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256632 258651 754 + . alignment_id 2 ; Query CbirOr17PSE ; Align 256632 12 108 ; Align 256740 49 612 ; Align 257494 253 87 ; Align 258265 282 111 ; Align 258466 319 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 730 Query range: 1 -> 371 Target range: 262798 -> 264885 2 : LysCysAlaThrHisGluSerAlaIleAspThrTyrArgArgAspAsnAspTyrSerL : 21 ::! !!.!||| ..!! !:!:!!:!:!!:! !!!!! !!:!|||||||||| ArgValValThrMetThrAspAspLeuGluSerPheGlySerLeuSerAspTyrSerL 262799 : CGAGTTGTCACGATGACCGACGACCTGGAAAGTTTCGGCAGTCTCAGCGACTACAGCC : 262856 22 : euGlnValAsnArgTrpLeuLeuLysSerIleGlyAlaTrpProGluSerSerMetLy : 40 |||||:!!|||||||||||||||||| !!||||||||||||||| !|||:!! .. euGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerAla---Se 262857 : TGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCGCC---TC : 262910 41 : sTyrSerValThrArgAsnIleLeuLysThrValLeuArgLeuThrCysHisLeuLeu : 59 ! !||| !! !..!...|||:!! ! !:!!|||! !:!!..!|||:!!! !||| rIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCysLeu 262911 : GATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTGTCTC : 262967 60 : IleAlaPheThrValValProSerMetLeuTyrIleIlePheGluGluLysAspPheA : 79 ||| !! !||||||:!!||||||!!:|||:!!|||:!!.!.|||! :!!:!!|||! IleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsnPheH 262968 : ATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAATTTCC : 263027 80 : rgLeuArgLeuLysAlaValGlyProPheSerHisCysLeuMetGlyGlyIleAsnTy : 98 .!:!!!:!|||:!!!.!:!!||||||.!!.!!!!.!! !!!:!:||| !|||||||| isMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleAsnTy 263028 : ATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCAATTA : 263084 99 : rCysSerLeuLeuHisHisGlySerHisIleArgArgSerIleGluHisMetGluAsn : 117 | !!!!||||||! !|||.!!!.! !!|||!:! !!!!!:!::!!|||:!!:!!.!. rThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGlnGlu 263085 : CACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCAGGAA : 263141 118 : AspTrpArgMetAlaLysArgGluHisAspArgGluValMetLeuArgAsnAlaArgI : 137 |||||| !!!!:!.!! ||| !.!.|||!:!...:!!||||||!:!||||||!:! AspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAlaLysT 263142 : GACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCGAAAT : 263201 138 : leGlyArgThrIleAlaGlyValCysAlaLeuIleMetGlnGlyGlyIleLeuSerTy : 156 !|||||| !:!:|||!.! !||||||:!!.!!|||||| !.!!|||:!!!!! ! yrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetCysLy 263202 : ACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGTGCAA : 263258 157 : rAsnLeuAlaArgGlyMetSerProIleIleGluValIleGlyAsnGluThrValAla : 175 !|||!.!! !!.!.!.!!! !! :!: ! ! !|||||||||||| ! ! sCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrArgIle 263259 : GTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAGAATT : 263315 176 : PheGlyArgLeuProCysProSerPheAsnMetIleValAspThrArgPheSerProV : 195 .!. !!! !|||||||||||| !!:!!!. !|||:!! ..! ! !:!|||. LeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThrAsnProT 263316 : CTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAATCCGA : 263375 196 : alTyrGluValValLeuValPheGlnPheLeuSerIleIleValValAsnAsnValTh : 214 .! !!|||:!! !!|||!.! |||||||||||| !.!!:!!|||!.! ..!|| hrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaThrTh 263376 : CGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGACAAC : 263432 215 : rIleGlyGlyCysGlyLeuThrAlaValPheAlaMetHisAlaCysGlyGlnLeuAsn : 233 |:!!|||!.!! !|||:!!||||||||||||||| ||||||||||||||||||||| rValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLeuAsn 263433 : TGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTTGAAC : 263489 234 : MetValMetLeuArgLeuHisGluLeuValAsnGluLysArgGluPhe{L} >>>> : 250 :!!:!!|||! ! !!:!! |||!!!||||||:!!...|||!!: { } ValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGlu{A}-+ 263490 : GTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAG{A}at..... : 263543 251 : Target Intron 1 >>>> {eu}SerArgMetGluThrValIleArgGlnIleCy : 261 141 bp { !} |||!!::!!!.!|||!!:!!! !||||| ++{sn}---ArgIleLysAsnValMetSerThrIleCy 263544 : ....................ag{AT}---CGTATTAAGAATGTGATGAGTACGATATG : 263711 262 : sPheValGluLeuValGlyCysThrPheAsnLeuCysMetLeuGlyTyrTyrThrIle : 280 ||||||||||||| !! !..!|||.!.:!!:!!||||||||||||||||||! !:!! sPheValGluLeuPheLysAlaThrLeuAspIleCysMetLeuGlyTyrTyrIleLeu 263712 : TTTCGTGGAGTTATTCAAGGCTACGCTGGATATATGCATGCTAGGTTACTACATACTT : 263768 281 : ThrGluLeuHisGluGluSerAlaAsn{T} >>>> Target Intron 2 >>>> : 290 |||! !! !.!.||| ! |||! !!!.{ } 764 bp ThrVal***GluGluTyrSerGluLys{T}++ + 263769 : ACGGTATGAGAAGAATATAGTGAGAAA{T}gt.........................a : 264561 291 : {hr}IleIleSerTyrIleMetValLeuIleSerMetMetPheAsnIlePheIlePh : 308 { !}::: !!!!|||.!!|||:!!|||||||||||| !|||||||||:!!.! -{yr}LeuThrThrTyrPheMetIleLeuIleSerMetCysGlyAsnIlePheLeuMe 264562 : a{at}ttgacTACATATTTCATGATACTGATATCAATGTGCGGCAACATTTTTCTAAT : 264616 309 : eCysPhePheGlyGluLeuValMetAspGln >>>> Target Intron 3 >>>> : 319 .|||!:!.!!||||||:!!:!!! !!:||| 78 bp tCysTyrIleGlyGluIleLeuThrGluGln++ 264617 : GTGTTATATCGGCGAGATATTGACTGAGcaggt......................... : 264651 320 : CysLysLysValGlyGluAlaAlaTyrMetThrAsnTrpTyrTyrLeuProArgLy : 337 ||||||||||||||||||!.!!.!||||||:!!|||||||||||||||||| !|| ++CysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrLy 264652 : agTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACAA : 264781 338 : sThrValPheAlaLeuIleLeuIleIleLeuArgSerArgIleThrValLysIleThr : 356 | !:!!.!!! !||||||||||||||||||||||||!!!:!:..! !!|||.!!||| sAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheThr 264782 : AGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCACC : 264838 357 : AlaAlaLysValPheHisMetSerIleAlaThrPheGlyValVal : 371 |||!.!|||:!!.!!|||||||||!!: !||||||.!!! !||| AlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264839 : GCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: CbirOr17PSE 1 371 . KQ414889.1 262798 264885 + 730 M 37 111 G 1 0 M 210 630 S 0 1 5 0 2 I 0 137 3 0 2 S 1 2 G 1 0 M 38 114 S 0 1 5 0 2 I 0 760 3 0 2 S 1 2 M 28 84 5 0 2 I 0 74 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262799 264885 730 + . gene_id 3 ; sequence CbirOr17PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262799 263540 . + . KQ414889.1 exonerate:protein2genome:local exon 262799 263540 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 263541 263542 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 263541 263681 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263680 263681 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 263682 263798 . + . KQ414889.1 exonerate:protein2genome:local exon 263682 263798 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 263799 263800 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263799 264562 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264561 264562 . + . intron_id 1 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 264563 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264563 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264726 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262799 264885 730 + . alignment_id 3 ; Query CbirOr17PSE ; Align 262799 2 111 ; Align 262910 40 630 ; Align 263684 252 114 ; Align 264565 291 84 ; Align 264727 319 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 604 Query range: 11 -> 371 Target range: 208191 -> 211932 12 : ThrTyrArgArgAspAsnAspTyrSerLeuGlnValAsnArgTrpLeuLeuLysSerI : 31 !.!|||!:!!.!||| ..!!:!!:!:!!!:::!!||| !||| !||||||! !| AsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuLysIleI 208192 : AACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGAAGATAA : 208249 32 : leGlyAlaTrpProGluSerSerMetLysTyrSerValThrArgAsnIleLeuLysTh : 50 |||||:!!||||||..! |||!!: ! !||| ! !..!|||! !! ! ! ! leGlySerTrpProArg---SerIleAspArgSerTrpLeuGluAsnSerGlnHisIl 208250 : TCGGCTCCTGGCCGAGA---TCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCATAT : 208303 51 : rValLeuArgLeuThrCysHisLeuLeuIleAlaPheThrValValProSerMetLeu : 69 !:!!|||!.!:!! ! !!|||! !|||:!!!.!|||! !|||:!!|||!!! :!! eLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGlyMet 208304 : TCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATG : 208360 70 : TyrIleIlePheGluGluLysAspPheArgLeuArgLeuLysAlaValGlyProPheS : 89 !:! |||.!!! !! :!!|||||| ! !!:!|||||| ! !.!! !!.!.| PheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaLeuS 208361 : TTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTCTGA : 208420 90 : erHisCysLeuMetGlyGlyIleAsnTyrCysSerLeuLeuHisHisGlySerHisIl : 108 || !! !:!!|||!.! !! !!.||| ! !:!! ! !!.!! !.!! !!|| erPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAspIl 208421 : GCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGACAT : 208477 109 : eArgArgSerIleGluHisMetGluAsnAspTrpArgMetAlaLysArgGluHisAsp : 127 ||||!:!!!!:!!|||:!!:!:||| !|||||||||! !.!:!!!.!|||.!.||| eArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGluAsp 208478 : ACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAGGAC : 208534 128 : ArgGluValMetLeuArgAsnAlaArgIleGlyArgThrIleAlaGlyValCysAlaL : 147 |||:!!:!!|||||| !||||||!!!.!!!.!|||! !:!: !! !:!!|||!.! ArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysGlyA 208535 : AGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCGGAG : 208594 148 : euIleMetGlnGlyGlyIleLeuSerTyrAsnLeuAlaArgGlyMetSerProIleIl : 166 !.!!||| ! ||||||:::::: ||| :!!||| ! !:!:!!!! ! !! laPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAspLy 208595 : CTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGACAA : 208651 167 : eGluValIleGlyAsnGluThrValAlaPheGlyArgLeuProCysProSerPheAsn : 185 ! ||| ! !..!! !.!:!!.!!!:! !!|||||| !! !||| ! !!!. sValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValProLys 208652 : GGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCTAAG : 208708 186 : MetIleValAspThrArgPheSerProValTyrGluValValLeuValPheGlnPheL : 205 .!.|||:!!|||..!|||!:!||||||||| !!|||:!! !!! !..! ! |||!!.| PheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnLeuL 208709 : TTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAATTGT : 208768 206 : euSerIleIleValValAsnAsnValThrIleGlyGlyCysGlyLeuThrAlaValPh : 224 ||||| !.!!|||!.!:!!|||:!!|||:!!|||!.!|||||||||.!!|||:!!.! euSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLeuLe 208769 : TGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCTGCT : 208825 225 : eAlaMetHisAlaCysGlyGlnLeuAsnMetValMetLeuArgLeuHisGluLeuVal : 243 !||||||||||||||||||||||||.!.!!::!!|||! ! !!:!!.!.:!!|||||| uAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeuVal 208826 : CGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTGGTC : 208882 244 : AsnGluLysArg{Gl} >>>> Target Intron 1 >>>> {u}PheLeuSerA : 252 :!!! !::!..!{!!} 1599 bp {:}|||:!!:!!! AspGlyArgGlu{As}-- ++{p}PheIleAlaL 208883 : GATGGACGGGAG{GA}cg.........................ag{T}TTTATAGCTC : 210508 253 : rgMetGluThrValIleArgGlnIleCysPheValGluLeuValGlyCysThrPheAs : 271 !! |||!.!:!!:!:!.!:!!|||! !!.:!!|||:!!||||||||||||.!.|| euThrGluAsnLeuLeuHisGluIleSerLeuIleGluMetValGlyCysThrLeuAs 210509 : TGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAATGGTGGGGTGCACTCTGAA : 210565 272 : nLeuCysMetLeuGlyTyrTyrThrIleThr >>>> Target Intron 2 >>>> : 282 |:!!|||.!.|||||||||||||||!!:! ! 66 bp nMetCysPheLeuGlyTyrTyrThrMetIle++ 210566 : CATGTGTTTCCTTGGCTATTACACGATGATTgt......................... : 210600 283 : GluLeuHisGluGluSerAlaAsnThrIleIleSerTyrIleMetValLeuIleSe : 300 |||! ! !!...:!!..! !!! !!:!! !:!:!!!||||||:!::!!|||! !|| ++GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValLeuLeuThrSe 210601 : agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTACTCCTCACTTC : 210718 301 : rMetMetPheAsnIlePheIlePheCysPhePheGlyGluLeuValMetAspGln > : 319 |:!:! !|||||||||||||||||||||!:!.!!||||||:!!:!! !!:||| rValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAlaGluGln++ 210719 : TGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGCTGAACAggt. : 210777 320 : >>> Target Intron 3 >>>> CysLysLysValGlyGluAlaAlaTyrMetTh : 329 999 bp !|||||||||||| !:!!||||||! ++ThrValLysValGlyGluLysSerTyrMetIl 210778 : ........................agACAGTAAAAGTTGGAGAAAAGTCTTACATGAT : 211804 330 : rAsnTrpTyrTyrLeuProArgLysThrValPheAlaLeuIleLeuIleIleLeuArg : 348 !:!!|||||| :!!||| !!|||! !! !!!.!.!:!! !|||!!:|||! !! ! eAspTrpTyrArgMetProGlyLysLysGlyLeuValValProLeuMetIleSerMet 211805 : CGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGATGATCTCCATG : 211861 349 : SerArgIleThrValLysIleThrAlaAlaLysValPheHisMetSerIleAlaThrP : 368 |||!.! |||..!||||||||||||!.!!!.:!!.!! !:!:||||||::!!:!| SerHisSerThrThrLysIleThrAlaGlyAsnLeuIleValLeuSerIleSerSerP 211862 : TCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTTCTTTCAATCAGTAGTT : 211921 369 : heGlyValVal : 371 |||||! !||| heGlyAspVal 211922 : TCGGTGACGTA : 211932 vulgar: CbirOr17PSE 11 371 . KQ414889.1 208191 211932 + 604 M 25 75 G 1 0 M 210 630 S 0 2 5 0 2 I 0 1595 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 995 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208192 211932 604 + . gene_id 4 ; sequence CbirOr17PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208192 208898 . + . KQ414889.1 exonerate:protein2genome:local exon 208192 208898 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 208899 208900 . + . intron_id 1 ; splice_site "CG" KQ414889.1 exonerate:protein2genome:local intron 208899 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211932 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211932 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208192 211932 604 + . alignment_id 4 ; Query CbirOr17PSE ; Align 208192 12 75 ; Align 208267 38 630 ; Align 210499 249 99 ; Align 210664 282 111 ; Align 211774 319 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 568 Query range: 16 -> 281 Target range: 266631 -> 267558 17 : AsnAspTyrSerLeuGlnValAsnArgTrpLeuLeuLysSerIleGlyAlaTrpProG : 36 !:!|||||||||||||||:!!|||||||||!!!|||||| !!||||||||||||||| SerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProP 266632 : AGCGATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGC : 266689 37 : luSerSerMetLysTyrSerValThrArgAsnIleLeuLysThrValLeuArgLeuTh : 55 !! !|||:!:! !! !!.!:!! !||| |||:!!... !!.!|||! !:!!! roLeuSerLeuThrSerLysLeuGluArg---IleValSerTyrAlaLeuIleValIl 266690 : CGTTGTCACTCACATCTAAACTCGAACGA---ATCGTTTCCTACGCTTTGATCGTCAT : 266743 56 : rCysHisLeuLeuIleAlaPheThrValValProSerMetLeuTyrIleIlePheGlu : 74 !|||:!!! !! !||| !|||||||||:!!|||!!!:!!!!!:!!:!!:!!.!.||| eCysTyrCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGlu 266744 : CTGCTACTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAG : 266800 75 : GluLysAspPheArgLeuArgLeuLysAlaValGlyProPheSerHisCysLeuMetG : 94 !!::!!..!.!!||| !!:!:!!|||!.! !!||||||.!.||||||!! !!!:!:| AspGluSerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValG 266801 : GACGAGAGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCG : 266860 95 : lyGlyIleAsnTyrCysSerLeuLeuHisHisGlySerHisIleArgArgSerIleGl : 113 |||||||||||||| !!!!||||||! !.!.!!!.!.!.|||||| !!!!!:!!|| lyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGl 266861 : GAGGAATTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGA : 266917 114 : uHisMetGluAsnAspTrpArgMetAlaLysArgGluHisAspArgGluValMetLeu : 132 |||||||:!!!..|||||||||!!:!.!! ||| !.!.|||!:!:!!||||||||| uHisMetGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeu 266918 : GCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTG : 266974 133 : ArgAsnAlaArgIleGlyArgThrIleAlaGlyValCysAlaLeuIleMetGlnGlyG : 152 !:!|||||||||||||||||| !|||||| ! !!|||||| !.!!|||||| !!| LysAsnAlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysG 266975 : AAGAACGCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCG : 267034 153 : lyIleLeuSerTyrAsnLeuAlaArgGlyMetSerProIleIleGluValIleGlyAs : 171 ||:!!|||.!!||| !:!! !! !!.!.!.!!! ! ! !! !! !:!!||||| lyValLeuGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAs 267035 : GTGTTCTCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAA : 267091 172 : nGluThrValAlaPheGlyArgLeuProCysProSerPheAsnMetIleValAspThr : 190 ||||||| ! ! ! !! !||||||||| !! !!:!!!.! !!!::!!! ..! nGluThrArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaVal 267092 : CGAGACTAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTT : 267148 191 : ArgPheSerProValTyrGluValValLeuValPheGlnPheLeuSerIleIleValV : 210 ! !||||||..! !!|||:!!|||||||||! ||||||:!!||| !.!!:!!| AspThrSerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleV 267149 : GATACCAGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCG : 267208 211 : alAsnAsnValThrIleGlyGlyCysGlyLeuThrAlaValPheAlaMetHisAlaCy : 229 |||||::: !..!:!!|||!.!! !.!!|||.!!|||||||||||| |||||||| alAsnSerSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCy 267209 : TGAATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTG : 267265 230 : sGlyGlnLeuAsnMetValMetLeuArgLeuHisGluLeuValAsnGluLysArgGlu : 248 ||||||||||!:!:!!:!!|||:!! !!:!! ! |||!!!||||||..!...|||!!: sGlyGlnLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAsp 267266 : CGGACAGCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGAT : 267322 249 : PheLeu{S} >>>> Target Intron 1 >>>> {er}ArgMetGluThrValI : 257 ! !{!} 135 bp {!!}|||!!:|||!:!|||! SerAsn{T}-- ++{hr}ArgIleGluSerValM 267323 : AGCAAT{A}ag.........................ag{CA}CGTATCGAAAGTGTAA : 267484 258 : leArgGlnIleCysPheValGluLeuValGlyCysThrPheAsnLeuCysMetLeuGl : 276 !:!!!:!!|||||||||:!!|||||| !! !||||||.!.:!!:!!|||:!!|||.! etSerGluIleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeuSe 267485 : TGAGCGAAATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTTAG : 267541 277 : yTyrTyrThrIleThr : 281 !||||||! !:!!||| rTyrTyrIleLeuThr 267542 : CTATTATATCCTTACG : 267558 vulgar: CbirOr17PSE 16 281 . KQ414889.1 266631 267558 + 568 M 29 87 G 1 0 M 204 612 S 0 1 5 0 2 I 0 131 3 0 2 S 1 2 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266632 267558 568 + . gene_id 5 ; sequence CbirOr17PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266632 267331 . + . KQ414889.1 exonerate:protein2genome:local exon 266632 267331 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 267332 267333 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local intron 267332 267466 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267465 267466 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267467 267558 . + . KQ414889.1 exonerate:protein2genome:local exon 267467 267558 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266632 267558 568 + . alignment_id 5 ; Query CbirOr17PSE ; Align 266632 17 87 ; Align 266719 47 612 ; Align 267469 252 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 560 Query range: 16 -> 281 Target range: 274377 -> 275309 17 : AsnAspTyrSerLeuGlnValAsnArgTrpLeuLeuLysSerIleGlyAlaTrpProG : 36 !:!|||||||||||||||:!!|||||||||!!!|||||| !!||||||||||||||| SerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProL 274378 : AGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGT : 274435 37 : luSerSerMetLysTyrSerValThrArgAsnIleLeuLysThrValLeuArgLeuTh : 55 !:!!||| ! !.! !! !||| ||||||..! !:::||| ... euAlaSerProThrThrLysPheGluArg---IleLeuSerHisLeuLeuIlePheLe 274436 : TAGCCTCGCCCACCACGAAATTCGAACGA---ATCCTTTCACACCttttaatcttcct : 274489 56 : rCysHisLeuLeuIleAlaPheThrValValProSerMetLeuTyrIleIlePheGlu : 74 |||:!!! !!!!||| !! !||||||:!!||||||!!:!!!:!!||||||.!.! ! uCysTyrCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuVal 274490 : ttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTA : 274546 75 : GluLysAspPheArgLeuArgLeuLysAlaValGlyProPheSerHisCysLeuMetG : 94 !!::!!..!.!!!.!|||!:!|||||| !:!!||||||.!!.!!|||!! !!!!!:| AspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleG 274547 : GATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCG : 274606 95 : lyGlyIleAsnTyrCysSerLeuLeuHisHisGlySerHisIleArgArgSerIleGl : 113 |||||||||||||| !!!!||||||! !.!.!!!.!.!.|||||| !!!!!:!:|| lyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGl 274607 : GAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGA : 274663 114 : uHisMetGluAsnAspTrpArgMetAlaLysArgGluHisAspArgGluValMetLeu : 132 |||||||:!!!..|||||||||!!:!.!! ||| !.!.|||!:!:!!||||||||| uHisMetGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeu 274664 : GCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTG : 274720 133 : ArgAsnAlaArgIleGlyArgThrIleAlaGlyValCysAlaLeuIleMetGlnGlyG : 152 !:!||||||!:!||||||||| !:!!||| ! !!|||||| !.!!|||||| !!| LysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysG 274721 : AAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCG : 274780 153 : lyIleLeuSerTyrAsnLeuAlaArgGlyMetSerProIleIleGluValIleGlyAs : 171 ||:!!|||!!!||| !:!! !! !!.!.!.!!! ! ! !! !:!!||||| lyValLeuCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAs 274781 : GTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAA : 274837 172 : nGluThrValAlaPheGlyArgLeuProCysProSerPheAsnMetIleValAspThr : 190 ||||||| !.!! ! !! !||||||||| !:!!!:!!!.! !||||||! ..! nGluThrArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaVal 274838 : CGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTG : 274894 191 : ArgPheSerProValTyrGluValValLeuValPheGlnPheLeuSerIleIleValV : 210 ! ||||||..! !!|||:!!||||||!.!! ||||||:!!||| !.!!:!!| AspThrSerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleV 274895 : GACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCG : 274954 211 : alAsnAsnValThrIleGlyGlyCysGlyLeuThrAlaValPheAlaMetHisAlaCy : 229 |||||::: !.!!:!!|||!.!! !.!!|||.!!|||||||||||| ||||||! alAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTy 274955 : TGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTA : 275011 230 : sGlyGlnLeuAsnMetValMetLeuArgLeuHisGluLeuValAsnGluLys{Ar} : 247 !|||||||||!:!:!!:!!|||:!! !!:!! !|||!!!||||||.!....{!!} rGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheValAsnHisSer{Se}+- 275012 : CGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCC{AG}gg : 275067 248 : >>>> Target Intron 1 >>>> {g}GluPheLeuSerArgMetGluThrValI : 257 140 bp {!}...|||:!!:!!|||!!:||| !|||! -+{r}SerPheIleAlaArgIleGluAspValM 275068 : .........................tg{T}AGTTTCATAGCACGTATCGAGGATGTGA : 275235 258 : leArgGlnIleCysPheValGluLeuValGlyCysThrPheAsnLeuCysMetLeuGl : 276 !:!.!!:!|||||||||:!!|||||| !! !||||||.!.:!!:!!||||||||||| etAsnArgIleCysPheMetGluLeuPheLysCysThrLeuAspMetCysMetLeuGl 275236 : TGAATCGAATATGCTTCATGGAATTGTTCAAGTGTACTCTGGATATGTGCATGCTTGG : 275292 277 : yTyrTyrThrIleThr : 281 |||||||! !:!!||| yTyrTyrIleLeuThr 275293 : CTATTACATTCTCACG : 275309 vulgar: CbirOr17PSE 16 281 . KQ414889.1 274377 275309 + 560 M 29 87 G 1 0 M 200 600 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274378 275309 560 + . gene_id 6 ; sequence CbirOr17PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274378 275066 . + . KQ414889.1 exonerate:protein2genome:local exon 274378 275066 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 275067 275068 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local intron 275067 275206 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275205 275206 . + . intron_id 0 ; splice_site "TG" KQ414889.1 exonerate:protein2genome:local cds 275207 275309 . + . KQ414889.1 exonerate:protein2genome:local exon 275207 275309 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274378 275309 560 + . alignment_id 6 ; Query CbirOr17PSE ; Align 274378 17 87 ; Align 274465 47 600 ; Align 275208 248 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 556 Query range: 11 -> 280 Target range: 259751 -> 260878 12 : ThrTyrArgArgAspAsnAspTyrSerLeuGlnValAsnArgTrpLeuLeuLysSerI : 31 !:!!:!! !!!! !!!:!||||||||||||||| !!|||||||||!!!|||||| !!| SerPheThrSerHisSerAspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProI 259752 : AGTTTCACTAGCCACAGTGACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGA : 259809 32 : leGlyAlaTrpProGluSerSerMetLysTyrSerValThrArgAsnIleLeuLysTh : 50 |||||||||||||| |||||| ! ! !!!!:!! !!:! |||:!!..... leGlyAlaTrpProProSerSerSerThrThrArgLeuGluLys---IleIleSerVa 259810 : TAGGCGCTTGGCCACCTTCATCCTCCACGACCAGACTCGAGAAG---ATCATCTCTGT : 259863 51 : rValLeuArgLeuThrCysHisLeuLeuIleAlaPheThrValValProSerMetLeu : 69 !:!!|||! !!!!! !|||:!! ! !||| ! !!|||:!!:!!|||!!!:!:||| lIleLeuIlePheIleCysTyrSerThrIleLeuValThrLeuIleProCysValLeu 259864 : TATCCTGATCTTTATCTGCTACAGTACCATACTGGTCACCCTGATCCCGTGCGTACTT : 259920 70 : TyrIleIlePheGluGluLysAspPheArgLeuArgLeuLysAlaValGlyProPheS : 89 :!!!!::!!.!!|||:!!:!!..!!!. !:!!!:! !|||!.!:!!||||||.!!! HisMetLeuLeuGluLysGluSerLeuTyrMetLysThrLysValLeuGlyProLeuT 259921 : CACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTA : 259980 90 : erHisCysLeuMetGlyGlyIleAsnTyrCysSerLeuLeuHisHisGlySerHisIl : 108 !!|||!! !!!:!:||| !!||||||||| !!!|||||| ...|||!!! !!|| hrHisTrpPheValGlyCysIleAsnTyrThrThrLeuLeuLeuArgGlyArgAspIl 259981 : CCCACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTGTTGAGAGGCAGAGACAT : 260037 109 : eArgArgSerIleGluHisMetGluAsnAspTrpArgMetAlaLysArgGluHisAsp : 127 |! !!!!!!!:!:||||||:!!|||||||||||||||!!: !! !|||||| ! ||| eLeuSerCysValGluHisValGluAsnAspTrpArgIleIleThrArgGluLysAsp 260038 : ACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGAATTATAACGAGGGAGAAGGAT : 260094 128 : ArgGluValMetLeuArgAsnAlaArgIleGlyArgThrIleAlaGlyValCysAlaL : 147 !:!.!.|||||||||||| !!|||!:!.!!|||||| !:!!|||!.! !|||||| GlnAsnValMetLeuArgTyrAlaLysPheGlyArgTyrValAlaAlaSerCysAlaA 260095 : CAGAACGTGATGTTGAGATACGCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGG : 260154 148 : euIleMetGlnGlyGlyIleLeuSerTyrAsnLeuAlaArgGlyMetSerProIleIl : 166 !.!!:!!|||||||||:!!|||!!!!:! !|||!.!! !! !:!!||| !! :! laPheValGlnGlyGlyValLeuCysPheCysLeuValThrValLeuSerThrGluVa 260155 : CTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGT : 260211 167 : eGluValIleGlyAsnGluThrValAlaPheGlyArgLeuProCysProSerPheAsn : 185 : ! !:!:|||||||||||| ! ! !! !! !||||||||| !! !!:!!!. lIleGlnValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaValTyrLys 260212 : GATACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAA : 260268 186 : MetIleValAspThrArgPheSerProValTyrGluValValLeuValPheGlnPheL : 205 !:!::!!:!!..!!.! !||||||:!! !!|||:!!||||||||| ! ||||||: GluLeuIleAsnValAsnAspSerProMetAsnGluIleValLeuValValGlnPheV 260269 : GAGCTGATAAACGTGAACGACAGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCG : 260328 206 : euSerIleIleValValAsnAsnValThrIleGlyGlyCysGlyLeuThrAlaValPh : 224 !!||| !.!!:!!||||||::: !|||:!!||| !! !.!!|||.!!||||||.! alSerGlyPheIleValAsnSerSerThrValGlyIlePheSerLeuAlaAlaValLe 260329 : TCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCT : 260385 225 : eAlaMetHisAlaCysGlyGlnLeuAsnMetValMetLeuArgLeuHisGluLeuVal : 243 ..!! |||||||||||||||||||||:!!:!!||| ! !!:!! |||!!!||| uThrAlaHisAlaCysGlyGlnLeuAsnValLeuMetGluTrpIleThrGluPheVal 260386 : GACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAATGGATCACGGAGTTTGTG : 260442 244 : AsnGluLysArg{Gl} >>>> Target Intron 1 >>>> {u}PheLeuSerA : 252 :!!|||..!|||{.!} 323 bp {.}|||:!!|||| AspGluSerArg{As}-- ++{n}PheIleSerA 260443 : GACGAGTCGAGG{AA}ca.........................ag{C}TTCATATCGC : 260792 253 : rgMetGluThrValIleArgGlnIleCysPheValGluLeuValGlyCysThrPheAs : 271 ||!!:||| !|||!!:!.!!:!|||||||||:!!|||||| !! !!||||||.!.:! rgIleGluAspValMetAsnArgIleCysPheLeuGluLeuPheArgCysThrLeuAs 260793 : GTATCGAGGATGTGATGAACCGGATATGCTTCCTGGAGTTGTTCAGGTGCACTCTGGA : 260849 272 : nLeuCysMetLeuGlyTyrTyrThrIle : 280 !:!!|||:!:||||||||||||! !:!! pIleCysLeuLeuGlyTyrTyrIleLeu 260850 : TATATGTCTACTTGGCTACTATATTCTT : 260878 vulgar: CbirOr17PSE 11 280 . KQ414889.1 259751 260878 + 556 M 34 102 G 1 0 M 201 603 S 0 2 5 0 2 I 0 319 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259752 260878 556 + . gene_id 7 ; sequence CbirOr17PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259752 260458 . + . KQ414889.1 exonerate:protein2genome:local exon 259752 260458 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 260459 260460 . + . intron_id 1 ; splice_site "CA" KQ414889.1 exonerate:protein2genome:local intron 260459 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260878 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260878 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259752 260878 556 + . alignment_id 7 ; Query CbirOr17PSE ; Align 259752 12 102 ; Align 259854 47 603 ; Align 260783 249 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 529 Query range: 12 -> 368 Target range: 217156 -> 219662 13 : TyrArgArgAspAsnAspTyrSerLeuGlnValAsnArgTrpLeuLeuLysSerIleG : 32 |||...:::::: ::: |||:!!||| !|||||||||||||||||| !!!!:| TyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetG 217157 : tacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGG : 217214 33 : lyAlaTrpProGluSerSerMetLysTyrSerValThrArgAsnIleLeuLysThrVa : 51 || !|||||| !:!||| ! !!!! !:!!|||!!.|||||| ! ! !:! lyLeuTrpPro---AsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLe 217215 : GTCTTTGGCCA---AACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACT : 217268 52 : lLeuArgLeuThrCysHisLeuLeuIleAlaPheThrValValProSerMetLeuTyr : 70 !:!!!.! ! !|||:!! !||||||::!||| ! !!||||||!!! :!!||| uIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyr 217269 : GATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTAC : 217325 71 : IleIlePheGluGluLysAspPheArgLeuArgLeuLysAlaValGlyProPheSerH : 90 :!:.!!.!!|||! :!!|||.!! ! !!:!|||||| ! !!||||||!!.! ! ValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIleP 217326 : GTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCT : 217385 91 : isCysLeuMetGlyGlyIleAsnTyrCysSerLeuLeuHisHisGlySerHisIleAr : 109 !|||:!!|||!.! !:!!!!.|||! !||||||:!! !||| !:!! !!||||| heCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleAr 217386 : TCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCG : 217442 110 : gArgSerIleGluHisMetGluAsnAspTrpArgMetAlaLysArgGluHisAspArg : 128 |..!!!!:!:..!...!!:|||...|||||||||! !.!!:! !!||| ! |||||| gGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArg 217443 : CGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGG : 217499 129 : GluValMetLeuArgAsnAlaArgIleGlyArgThrIleAlaGlyValCysAlaLeuI : 148 |||!.!|||:!! !||||||!.!.!!||||||! !:!:!.! !:!!|||.!!!!!. GluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPheP 217500 : GAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCT : 217559 149 : leMetGlnGlyGlyIleLeuSerTyrAsnLeuAlaArgGlyMetSerProIleIleGl : 167 !!||| ! .!!|||...::: ||| ::!|||! ! !!!:||| ! ! ! heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIl 217560 : TCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAAT : 217616 168 : uValIleGlyAsnGluThrValAlaPheGlyArgLeuProCysProSerPheAsnMet : 186 :!! ! !|||! !!.!:!!.!!||| !! !||| !! !|||! ! !!. eLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyr 217617 : TCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTAT : 217673 187 : IleValAspThrArgPheSerProValTyrGluValValLeuValPheGlnPheLeuS : 206 |||:!!|||||||||!:!!!!|||..! !!|||:!!|||!!! !!.!!|||!!.:!!: IleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleA 217674 : ATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCG : 217733 207 : erIleIleValValAsnAsnValThrIleGlyGlyCysGlyLeuThrAlaValPheAl : 225 !! ! !:!!:!!:!!...:!!||| !.!!.!|||.!!|||.!!|||!.!||||| laGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAl 217734 : CTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGC : 217790 226 : aMetHisAlaCysGlyGlnLeuAsnMetValMetLeuArgLeuHisGluLeuValAsn : 244 |:!:|||||||||||||||:!!.!.:!!:!!||| ! !!|||!!..!.|||:!!:!! aValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAsp 217791 : GGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGAC : 217847 245 : GluLysArgGluPheLeuSerArgMetGluThrValIleArgGlnIleCys<-><->P : 262 ! !:! !!!:.!. !..!! !:!!!!: ! !||| !...||| ! GlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnH 217848 : GGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAAC : 217907 263 : heValGluLeuVal{Gl} >>>> Target Intron 1 >>>> {y}CysThrPh : 270 !|||..!:!!:!!{ } 1362 bp {!} .. isValArgIleLeu{Ly}++ ++{s}LysTyrIl 217908 : ACGTTCGGATATTA{AA}gt.........................ag{a}aaatatat : 219293 271 : eAsnLeuCysMetLeuGlyTyrTyrThrIleThrGluLeuHisGluGluSerAlaAsn : 289 . ::: ::: ::: !|||! ! ! ..!.!...!!.!!.. eTyrValAsnLeuTyrLysPheGluTyrGln***GluTrpLysSerAsnAspValThr 219294 : ttacgttaatttgtataaatttgaatatcaatAGGAATGGAAATCGAATGATGTAACG : 219350 290 : ThrIleIleSerTyrIleMetValLeuIleSerMetMetPheAsnIlePheIlePheC : 309 !:! !:!:!!!||||||!!::!!|||||||||:!: ||||||||||||||||||| SerAlaValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheC 219351 : AGTGCAGTGACATACATCATTCTACTTATATCCCTcactttcaacattttcatatttt : 219410 310 : ysPhePheGlyGluLeuValMetAspGln >>>> Target Intron 2 >>>> : 319 ||::!.!.||||||:!!||| !!:||| 73 bp ysTyrIleGlyGluIleValAlaGluGln++ ++ 219411 : gctaCATAGGAGAGATCGTTGCTGAACAggt.........................ag : 219511 320 : CysLysLysValGlyGluAlaAlaTyrMetThrAsnTrpTyrTyrLeuProArgLysT : 338 |||:::|||:::|||||| :!!||||||! !.!.|||||| ||| !! !!|||! CysArgLysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysL 219512 : TGtaggaaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGA : 219570 339 : hrValPheAlaLeuIleLeuIleIleLeuArgSerArgIleThrValLysIleThrAl : 357 ! !.!! ! !:!!|||! !||| !! !|||!.! !:!!:!!|||:!:||||| ysLysLeuTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAl 219571 : AAAAGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGC : 219627 358 : aAlaLysValPheHisMetSerIleAlaThrPhe : 368 |!.!!!.:!! !!.!.:!!||||||::!|||||| aGlyAsnMetValGluLeuSerIleSerThrPhe 219628 : CGGAAATATGGTCGAATTGTCTATCAGCACTTTT : 219662 vulgar: CbirOr17PSE 12 368 . KQ414889.1 217156 219662 + 529 M 23 69 G 1 0 M 225 675 G 0 6 M 5 15 S 0 2 5 0 2 I 0 1358 3 0 2 S 1 1 M 51 153 5 0 2 I 0 69 3 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217157 219662 529 + . gene_id 8 ; sequence CbirOr17PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217157 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217157 217923 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219285 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219284 219285 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219286 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219286 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219662 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219662 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217157 219662 529 + . alignment_id 8 ; Query CbirOr17PSE ; Align 217157 13 69 ; Align 217226 37 675 ; Align 217907 262 15 ; Align 219287 268 153 ; Align 219513 319 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 408 Query range: 6 -> 292 Target range: 284487 -> 286831 7 : GluSerAlaIleAspThrTyrArgArgAspAsnAspTyrSerLeuGlnValAsnArgT : 26 ...|||.!! !...|||!:: !! !||| ||||||:!!|||:!!||||||| SerSerThrAspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgT 284488 : TCTTCAACCGATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTT : 284545 27 : rpLeuLeuLysSerIleGlyAlaTrpProGluSerSerMetLysTyrSerValThrAr : 45 ||!!!|||||| !!||||||!.!|||||| !|||:!: !!!..! !.. rpPheLeuLysProIleGlyValTrpPro---LeuSerLeuCysValThrThrLeuGl 284546 : GGTTTCTCAAACCGATTGGCGTATGGCCT---CTCAGTCTCTGCGTGACCACCTTGGA : 284599 46 : gAsnIleLeuLysThrValLeuArgLeuThrCysHisLeuLeuIleAlaPheThrVal : 64 !!!.||| !.....!|||||| !|||! ! !! !!!!||||||!.!||| !:!! uLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeu 284600 : AAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTG : 284656 65 : ValProSerMetLeuTyrIleIlePheGluGluLys<->AspPheArgLeuArgLeuL : 83 ||||||!!! |||! !! !:!:.!!!!::!!! |||.!! ! !!:!:!!| ValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleL 284657 : GTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCA : 284716 84 : ysAlaValGlyProPheSerHisCysLeuMetGlyGlyIleAsnTyrCysSerLeuLe : 102 || !:!!||||||.!.||| !|||:!!|||!.!!.!|||!!.|||! !! !|||:! ysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIl 284717 : AAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAAT : 284773 103 : uHisHisGlySerHisIleArgArgSerIleGluHisMetGluAsnAspTrpArgMet : 121 ! !.!|||.!! ! ||| !!!:!!!!:!::!! !!!!:... |||||| !:!: eSerArgGlyGlyLysIleGlyGlnCysValLysAspIleArgAlaAspTrpSerLeu 284774 : TTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTC : 284830 122 : Ala<-><-><->LysArgGluHisAspArgGluValMetLeuArgAsnAlaArgIleG : 138 .!! !..:::|||...:::||||||:::||| ! !!:!|||||||||| ThrLeuSerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleG 284831 : ACGCTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTG : 284890 139 : lyArgThrIleAlaGlyValCysAlaLeuIleMetGlnGlyGlyIleLeuSerTyrAs : 157 |||||:!!:!:||| ! !!|||||| !.!!||| ! ..!||| !!!!! !|||!. lyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrTh 284891 : GACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACAC : 284947 158 : nLeuAlaArgGlyMetSerProIle<->IleGluValIleGlyAsnGluThrValAla : 175 ! !!.!! ! !:!!!!! !!:!! ! |||:!!|||! !|||||||||||| ! rThrValMetProLeuCysThrValArgThrGluIleIleAspAsnGluThrValArg 284948 : CACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGA : 285004 176 : PheGlyArgLeuProCysProSerPheAsnMetIleValAspThrArgPheSerProV : 195 ! ! ! !!!!||| ! !:!..! :!!:!!||| !!||| !|||||| SerGlnAlaPheProIle------TyrArgGlyLeuLeuAspProArgThrSerProS 285005 : TCTCAAGCGTTCCCGATC------TATCGCGGCCTTCTCGATCCGCGTACCAGCCCGT : 285058 196 : alTyrGluValValLeuValPheGlnPheLeuSerIleIleValValAsnAsnValTh : 214 !!:!|||:!!|||! ! !!.!.|||! !|||:!! .!!|||:!! !!:::||||| erPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValTh 285059 : CGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCAC : 285115 215 : rIleGlyGlyCysGlyLeuThrAlaValPheAlaMetHisAlaCysGlyGlnLeuAsn : 233 |:!!|||!.!|||.!!|||.!!|||||||||!.!||||||!.!|||||||||!!!!.. rValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArg 285116 : TGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGG : 285172 234 : MetValMetLeuArgLeuHisGluLeuValAsnGluLysArg{Gl} >>>> Targe : 248 !!::!!:!! !!:!||| !!:!!||||||:!!! ! !!:!{! } 1 IleLeuValThrLysLeuAspLysLeuValAspGlyValLys{Gl}+- 285173 : ATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAA{GG}ga.......... : 285221 249 : t Intron 1 >>>> {u}PheLeuSerArgMetGluThrValIleArgGlnIleCy : 261 480 bp { }|||:!!|||!:!!!:||| !:!!:!!!.!:!!||||| ++{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCy 285222 : ...............ag{T}TTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATG : 286736 262 : sPheValGluLeuValGlyCysThrPheAsnLeuCysMetLeuGlyTyrTyrThrIle : 280 ||||||||||:!!:!!|||||||||!!.|||:!!|||.!.|||||||||||| !:!: sPheValGluValIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeu 286737 : TTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTACTG : 286793 281 : ThrGluLeuHisGluGluSerAlaAsnThrIleIle : 292 |||! ! !.!. ! !!!!.!! !||||||:!: ThrValThrGluThrThrCysValIleThrIleLeu 286794 : ACGGTAACAGAGACGACTTGTGTTATTACCATACTG : 286831 vulgar: CbirOr17PSE 6 292 . KQ414889.1 284487 286831 + 408 M 29 87 G 1 0 M 40 120 G 0 3 M 46 138 G 0 9 M 43 129 G 0 3 M 16 48 G 2 0 M 64 192 S 0 2 5 0 2 I 0 1476 3 0 2 S 1 1 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284488 286831 408 + . gene_id 9 ; sequence CbirOr17PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284488 285218 . + . KQ414889.1 exonerate:protein2genome:local exon 284488 285218 . + . insertions 15 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 285219 285220 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 285219 286698 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286831 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286831 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284488 286831 408 + . alignment_id 9 ; Query CbirOr17PSE ; Align 284488 7 87 ; Align 284575 37 120 ; Align 284698 77 138 ; Align 284845 123 129 ; Align 284977 166 48 ; Align 285025 184 192 ; Align 286700 249 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 397 Query range: 12 -> 260 Target range: 221360 -> 222101 13 : TyrArgArgAspAsnAspTyrSerLeuGlnValAsnArgTrpLeuLeuLysSerIleG : 32 |||!:!! !:!! ! ! |||:!!|||:!!!:!||||||:!!|||||| !!|||| TyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleG 221361 : TACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCG : 221418 33 : lyAlaTrpProGluSerSerMetLysTyrSerValThrArgAsnIleLeuLysThrVa : 51 ||!.!||||||.!.|||:!! !!. !|||..!..!..!!.. !||| ! !:! lyValTrpProAsnSerAla---AsnIleSerThrValGluArgTyrLeuTyrTrpLe 221419 : GTGTTTGGCCAAATTCAGCC---AACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 52 : lLeuArgLeuThrCysHisLeuLeuIleAlaPheThrValValProSerMetLeuTyr : 70 !:!!!.!:!!..!|||:!! !||||||.!!||| !:!!||||||!!!! |||||| uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 71 : IleIlePheGluGluLysAspPheArgLeuArgLeuLysAlaValGlyProPheSerH : 90 :!:|||.!!|||! !:!!||| !! ! !|||:!!||| !:!!||||||!!.||| ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 91 : isCysLeuMetGlyGlyIleAsnTyrCysSerLeuLeuHisHisGlySerHisIleAr : 109 !|||:!!|||!.! !:!!!!.||| ! !|||:!!! !:!!! !!:! !!||||| heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 110 : gArgSerIleGluHisMetGluAsnAspTrpArgMetAlaLysArgGluHisAspArg : 128 |..!!!!||||||!.!!!:||| ||||||!:!! !! !... ! |||!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 129 : GluValMetLeuArgAsnAlaArgIleGlyArgThrIleAlaGlyValCysAlaLeuI : 148 !!::!!|||:!!..!||||||! !.!!|||||| !:!: ! !:!!|||.!!!!!. AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 149 : leMetGlnGlyGlyIleLeuSerTyrAsnLeuAlaArgGlyMetSerProIleIleGl : 167 !!||| ! .!!|||...::: ||| ::!|||! ! !.!.||| ! !! ! heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 168 : uValIleGlyAsnGluThrValAlaPheGlyArgLeuProCysProSerPheAsnMet : 186 ! !:!! ...|||...||| ! !:!! !! !|||! !! !...!. eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 187 : IleValAspThrArgPheSerProValTyrGluValValLeuValPheGlnPheLeuS : 206 |||||||||||||||!:!||||||||| !!|||:!!:!!!!! !.!!|||.!!:!!: IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 207 : erIleIleValValAsnAsnValThrIleGlyGlyCysGlyLeuThrAlaValPheAl : 225 !! ! !:!!:!!:!!!:!:!!||| !.!!.!|||.!!|||..!|||:!!||||| laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 226 : aMetHisAlaCysGlyGlnLeuAsnMetValMetLeuArgLeuHisGluLeuValAsn : 244 |:!!|||||||||||||||:!!.!.:!!:!!||| ! !!||| ! .!.|||:!!||| aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 245 : GluLysArgGluPheLeuSerArgMetGluThrValIleArgGlnIle : 260 ! ::! !!!:.!.! !!:!!.!:!!!!:! ! !||| !:!!||| GlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIle 222052 : GGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATT : 222101 vulgar: CbirOr17PSE 12 260 . KQ414889.1 221360 222101 + 397 M 26 78 G 1 0 M 221 663 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221361 222101 397 + . gene_id 10 ; sequence CbirOr17PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221361 222101 . + . KQ414889.1 exonerate:protein2genome:local exon 221361 222101 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221361 222101 397 + . alignment_id 10 ; Query CbirOr17PSE ; Align 221361 13 78 ; Align 221439 40 663 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 395 Query range: 11 -> 260 Target range: 212851 -> 213595 12 : ThrTyrArgArgAspAsnAspTyrSerLeuGlnValAsnArgTrpLeuLeuLysSerI : 31 ||||||..!!:! ::: |||::: ! !|||||||||||||||||| !!! ThrTyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProT 212852 : ACCTACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAA : 212909 32 : leGlyAlaTrpProGluSerSerMetLysTyrSerValThrArgAsnIleLeuLysTh : 50 ||| !||||||!!:!.!||| ! !!:!! !!:!|||||| !::! hrGlyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIleAlaArgLe 212910 : CGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATT : 212966 51 : rValLeuArgLeuThrCysHisLeuLeuIleAlaPheThrValValProSerMetLeu : 69 !||| !.! !..!|||:!! !||||||!.!!:! !|||:!!|||!!!! ||| uVal---AsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeu 212967 : GGTC---AATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTG : 213020 70 : TyrIleIlePheGluGluLysAspPheArgLeuArgLeuLysAlaValGlyProPheS : 89 |||:!:.!!.!!!!:! !::::::... ...:!!:!! ! !!||| !|||: TyrValPheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheA 213021 : TACGTGTTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTG : 213080 90 : erHisCysLeuMetGlyGlyIleAsnTyrCysSerLeuLeuHisHisGlySerHisIl : 108 !! !|||:!! !.! ! !!.||| !||||||:!!! !||||||..! !!|| laPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIl 213081 : CATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATAT : 213137 109 : eArgArgSerIleGluHisMetGluAsnAspTrpArgMetAlaLysArgGluHisAsp : 127 ||||! !!!!:!!|||||||||:!! !!||||||!:!! !! !!.!|||.!.||| eArgThrCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAsp 213138 : TCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGAC : 213194 128 : ArgGluValMetLeuArgAsnAlaArgIleGlyArgThrIleAlaGlyValCysAlaL : 147 !:!|||:!!||| ! !||||||!!!.!!|||!:!! !|||!.! !:!!||||||! LysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaP 213195 : AAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTT : 213254 148 : euIleMetGlnGlyGlyIleLeuSerTyrAsnLeuAlaArgGlyMetSerProIleIl : 166 !!.!!||| ! !|||.!! !! !||| !|||!.! ! !!!:||| !! !! hePheMetTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLy 213255 : TCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAA : 213311 167 : eGluValIleGlyAsnGluThrValAlaPheGlyArgLeuProCysProSerPheAsn : 185 ! !||| ! !:!! !.!|||.!!||| !!!:!:!! ! !||| !! !.. sMetValAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSerArg 213312 : AATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGA : 213368 186 : MetIleValAspThrArgPheSerProValTyrGluValValLeuValPheGlnPheL : 205 .!.|||||||||..!|||!:!||||||||| !!|||:!! !!!!!:!!.!!|||.!!: PheIleValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleI 213369 : TTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTA : 213428 206 : euSerIleIleValValAsnAsnValThrIleGlyGlyCysGlyLeuThrAlaValPh : 224 !!:!! !:!!:!!:!!:!! !:!!.!!:!:! !!.!|||.!!|||.!!|||||||| leAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPh 213429 : TAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTT : 213485 225 : eAlaMetHisAlaCysGlyGlnLeuAsnMetValMetLeuArgLeuHisGluLeuVal : 243 ||||:!:|||||||||||||||:!!..!!!::!!||| ! !!|||.!..!.|||:!! eAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIle 213486 : TGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATA : 213542 244 : AsnGluLysArgGluPheLeuSerArgMetGluThrValIleArgGlnIle : 260 :!!! !:!..!!!:.!. !!.!!.!:!!!!: ! !||| ! ||| AspGlyArgGluAspMetSerLysAsnValAspAspArgIleAlaValIle 213543 : GACGGTAGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATC : 213595 vulgar: CbirOr17PSE 11 260 . KQ414889.1 212851 213595 + 395 M 40 120 G 1 0 M 208 624 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212852 213595 395 + . gene_id 11 ; sequence CbirOr17PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212852 213595 . + . KQ414889.1 exonerate:protein2genome:local exon 212852 213595 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212852 213595 395 + . alignment_id 11 ; Query CbirOr17PSE ; Align 212852 12 120 ; Align 212972 53 624 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 387 Query range: 15 -> 247 Target range: 236843 -> 237530 16 : AspAsnAspTyrSerLeuGlnValAsnArgTrpLeuLeuLysSerIleGlyAlaTrpP : 35 ..!!:!||||||||||||||| !||||||||| !:!!||||||||||||.!!|||| SerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpP 236844 : AGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGC : 236901 36 : roGluSerSerMetLysTyrSerValThrArgAsnIleLeuLysThrValLeuArgLe : 54 ||:!!! !||| ! !:!:!! !|||||||||! !::! :!!|||!.!:! roGlnPheSerSer------AsnLeuGluArgAsnIleSerArg---IleLeuAsnVa 236902 : CACAGTTCTCGTCG------AACCTCGAGAGAAACATCTCTCGA---ATATTAAACGT : 236949 55 : uThrCysHisLeuLeuIleAlaPheThrValValProSerMetLeuTyrIleIlePhe : 73 !! !|||:!! ! !||| !|||:!!:!!:!!|||!!! !|||:!!:!!!!:.!. lIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeu 236950 : GATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTG : 237006 74 : GluGluLysAspPheArgLeuArgLeuLysAlaValGlyProPheSerHisCysLeuM : 93 |||:!! ! !||| ! !!:!:!!||| !:!!||| !!!!.||||||!! :!!. GluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValP 237007 : GAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGT : 237066 94 : etGlyGlyIleAsnTyrCysSerLeuLeuHisHisGlySerHisIleArgArgSerIl : 112 !. !! !|||!:!||| !! !||||||! !.. !!!.! !||||||!.!! !.! heCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePh 237067 : TCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTT : 237123 113 : eGluHisMetGluAsnAspTrpArgMetAlaLysArgGluHisAspArgGluValMet : 131 !.!.|||||||||!.!|||||||||! !.!! |||:::... :::||||||||| eAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMet 237124 : CAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATG : 237180 132 : LeuArgAsnAlaArgIleGlyArgThrIleAlaGlyValCysAlaLeuIleMetGlnG : 151 |||!:! !!|||!:!.!!.!!||| ! ||| ! !|||.!!:!!.!!!!:!!.| LeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisG 237181 : TTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACG : 237240 152 : lyGlyIleLeuSerTyrAsnLeuAlaArgGlyMetSerProIleIleGluValIleGl : 170 |||||||||||.!!||| !:!! !! !!.! !!! !!!!::!!! |||:!!|| lyGlyIleLeuGlyTyrCysValMetThrAlaSerThrThrMetValValValValGl 237241 : GTGGTATACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGG : 237297 171 : yAsnGluThrValAlaPheGlyArgLeuProCysProSerPheAsnMetIleValAsp : 189 ||||:!!|||..! !!!. !! !||||||! |||! !!:!!!. !:!!:!! yAsnLysThrThrIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuPro 237298 : AAACAAGACTACGATCTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCA : 237354 190 : ThrArgPheSerProValTyrGluValValLeuValPheGlnPheLeuSerIleIleV : 209 ..! ! !:! !!:!! !!!!::!!|||:!!:!!! |||||||||||| !.!!: ValAspThrAsnThrMetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheI 237355 : GTCGATACGAATACTATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTA : 237414 210 : alValAsnAsnValThrIleGlyGlyCysGlyLeuThrAlaValPheAlaMetHisAl : 228 !!!.!|||||| !.!!|||.!!! ! .!!||||||::!!.!.!..!! ||||| leAlaAsnAsnSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAl 237415 : TAGCGAACAACAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGC : 237471 229 : aCysGlyGlnLeuAsnMetValMetLeuArgLeuHisGluLeuValAsnGluLysArg : 247 |! !|||||||||!:!:!!||||||||| !:!!.!.!!:!!!|||!:!||| !||| aSerGlyGlnLeuSerValValMetLeuSerIleGluAspPheValSerGluAlaArg 237472 : GTCTGGCCAGTTGAGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGA : 237528 vulgar: CbirOr17PSE 15 247 . KQ414889.1 236843 237530 + 387 M 24 72 G 2 0 M 8 24 G 1 0 M 197 591 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236844 237530 387 + . gene_id 12 ; sequence CbirOr17PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236844 237530 . + . KQ414889.1 exonerate:protein2genome:local exon 236844 237530 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 236844 237530 387 + . alignment_id 12 ; Query CbirOr17PSE ; Align 236844 16 72 ; Align 236916 42 24 ; Align 236940 51 591 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 385 Query range: 6 -> 281 Target range: 278540 -> 280011 7 : GluSerAlaIleAspThrTyrArgArgAspAsnAspTyrSerLeuGlnValAsnArgT : 26 ..!|||.!! !...|||!::!.!! !||| ||||||:!!|||:!!||||||| SerSerThrAspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgT 278541 : TCGTCAACCGATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTT : 278598 27 : rpLeuLeuLysSerIleGlyAlaTrpProGluSerSerMetLysTyrSerValThrAr : 45 ||!!!|||||| !!||||||!.!|||||| !|||:!: !!!..! !.. rpPheLeuLysProIleGlyValTrpPro---LeuSerLeuCysValThrThrLeuGl 278599 : GGTTTCTCAAACCGATTGGCGTATGGCCT---CTCAGTCTCTGCGTGACCACCTTGGA : 278652 46 : gAsnIleLeuLysThrValLeuArgLeuThrCysHisLeuLeuIleAlaPheThrVal : 64 !!!.||| !.....!|||||| !|||! ! !! !!!!||||||!.!||| !:!! uLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeu 278653 : AAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTG : 278709 65 : ValProSerMetLeuTyrIleIlePheGluGluLys<->AspPheArgLeuArgLeuL : 83 ||||||!!! |||! !! !:!:.!!!!::!!! |||.!! ! !!:!:!!| ValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleL 278710 : GTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCA : 278769 84 : ysAlaValGlyProPheSerHisCysLeuMetGlyGlyIleAsnTyrCysSerLeuLe : 102 || !:!!||||||.!.||| !||| !|||!.! !|||!!.|||! !! !|||:! ysMetIleGlyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMe 278770 : AAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAAT : 278826 103 : uHisHisGlySerHisIleArgArgSerIleGluHisMetGluAsnAspTrpArgMet : 121 ! !.!|||.!! ! ||| !!!:!!!!:!:.!. !!!!:...!..|||||| !:!: tSerArgGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeu 278827 : GTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTT : 278883 122 : Ala<-><-><->LysArgGluHisAspArgGluValMetLeuArgAsnAlaArgIleG : 138 .!! ::::::|||...:::||||||:::||| ! !!:!|||||||||| ThrLeuSerTyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleG 278884 : ACACTTTCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTG : 278943 139 : lyArgThrIleAlaGlyValCysAlaLeuIleMetGlnGlyGlyIleLeuSerTyrAs : 157 |||||:!!:!:||| ! !! !!||| !.!!||| ! ..!||| !:!!! !|||!. lyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrTh 278944 : GACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACAC : 279000 158 : nLeuAlaArgGlyMetSerProIle<->IleGluValIleGlyAsnGluThrValAla : 175 ! !!.!! ! !:!!! ! !!:!! ! |||:!!|||! !|||||||||||| ! rAlaValMetProLeuPheAlaValArgThrGluIleIleAspAsnGluThrValArg 279001 : CGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGA : 279057 176 : PheGlyArgLeuProCysProSerPheAsnMetIleValAspThrArgPheSerProV : 195 ! ! ! !!!!||| ! !:!..! :!!:!!||| !!||| !|||||| SerGlnAlaPheProIle------TyrArgGlyLeuLeuAspProArgThrSerProS 279058 : TCTCAAGCGTTCCCGATC------TATCGCGGCCTCCTCGATCCGCGTACCAGCCCGT : 279111 196 : alTyrGluValValLeuValPheGlnPheLeuSerIleIleValValAsnAsnValTh : 214 !!:!|||:!!|||! ! !!.!.|||! !|||:!! .!!|||:!! !!:::||||| erPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValTh 279112 : CGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCAC : 279168 215 : rIleGlyGlyCysGlyLeuThrAlaValPheAlaMetHisAlaCysGlyGlnLeuAsn : 233 |:!!|||!.!|||.!!|||! !|||||||||!.!||||||!.!|||||||||!!!!.. rValGlyAlaCysSerLeuIleAlaValPheValMetHisValCysGlyGlnPheArg 279169 : TGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGG : 279225 234 : MetValMetLeuArgLeuHisGluLeuValAsnGluLysArg{Gl} >>>> Targe : 248 !!::!!:!! !!:!||| !!:!!|||:!!:!!! ! !!:!{! } IleLeuValThrLysLeuAspLysLeuIleAspGlyValLys{Gl}+- 279226 : ATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAA{GG}ga.......... : 279274 249 : t Intron 1 >>>> {u}PheLeuSerArgMetGluThrValIleArgGlnIleCy : 261 640 bp { }|||:!!|||!:!!!:||| !:!!:!:!.!:!!||||| ++{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCy 279275 : ...............ag{T}TTTATATCGCAAATCGAGGGGCTCCTGAACGAAATATG : 279949 262 : sPheValGluLeuValGlyCysThrPheAsnLeuCysMetLeuGlyTyrTyrThrIle : 280 ||||||||||:!!:!!|||||||||!!.|||:!!|||.!.||| !|||||| !:!! sPheValGluValIleGlyCysThrLeuAsnIleCysPheLeuThrTyrTyrLeuLeu 279950 : TTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGACATATTATTTACTC : 280006 281 : Thr : 281 ||| Thr 280007 : ACG : 280011 vulgar: CbirOr17PSE 6 281 . KQ414889.1 278540 280011 + 385 M 29 87 G 1 0 M 40 120 G 0 3 M 46 138 G 0 9 M 43 129 G 0 3 M 16 48 G 2 0 M 64 192 S 0 2 5 0 2 I 0 636 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278541 280011 385 + . gene_id 13 ; sequence CbirOr17PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278541 279271 . + . KQ414889.1 exonerate:protein2genome:local exon 278541 279271 . + . insertions 15 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 279272 279273 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 279272 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278541 280011 385 + . alignment_id 13 ; Query CbirOr17PSE ; Align 278541 7 87 ; Align 278628 37 120 ; Align 278751 77 138 ; Align 278898 123 129 ; Align 279030 166 48 ; Align 279078 184 192 ; Align 279913 249 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 333 Query range: 11 -> 246 Target range: 303175 -> 304806 12 : ThrTyrArgArgAspAsnAspTyrSerLeuGlnValAsnArgTrpLeuLeuLysSerI : 31 !.!|||!:!!:!|||! !! !||| ! !:!! !!:!!:!|||:!!|||||||||: AsnTyrLysLysAspIleValTyrValThrLysHisSerLysTrpIleLeuLysSerL 303176 : AATTACAAGAAAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCC : 303233 32 : leGlyAlaTrpProGluSerSerMetLysTyrSerValThrArgAsnIleLeuLysTh : 50 !!||| !|||||| !! ..!! !||| !....!!||| !! euGlyIleTrpPro---------AlaValLeuAspGluThrAlaGlyPheLeuProLy 303234 : TTGGTATTTGGCCA---------GCCGTGTTGGACGAAACCGCAGGATTCCTACCAAA : 303281 51 : rValLeuArgLeuThrCysHisLeuLeuIleAlaPheThrValValProSerMetLeu : 69 !:!! !! ! ! ! !!:!!|||:!!:!! !|||||||||:!!|||!!!!!:||| sIleThrIleGlyLeuSerAsnLeuValLeuLeuPheThrValIleProCysIleLeu 303282 : AATCACCATTGGACTCAGTAATTTGGTTCTATTATTCACCGTGATACCGTGTATTCTA : 303338 70 : TyrIleIlePheGluGluLysAspPheArgLeuArgLeuLysAlaValGlyProPheS : 89 :!!||||||||||||:!!|||||| ! !:!!||||||||| ! !!|||! !.!.| HisIleIlePheGluGlnLysAspThrIleIleArgLeuLysLeuPheGlyLeuLeuS 303339 : CACATAATATTCGAACAAAAGGATACGATAATAAGATTGAAACTATTCGGTCTGCTGA : 303398 90 : erHisCysLeuMetGlyGlyIleAsnTyrCysSerLeuLeuHisHisGlySerHisIl : 108 || !||||||!!:..! !!!:!!.|||!! :!!||| ! !.. ! !!...|| erPheCysLeuIleSerLeuMetLysTyrTrpAlaLeuAlaThrArgLysProArgIl 303399 : GTTTCTGTTTGATCTCGTTGATGAAGTATTGGGCCCTCGCCACGCGGAAACCAAGGAT : 303455 109 : eArgArgSerIleGluHisMetGluAsnAspTrpArgMet >>>> Target Intr : 122 |!:!..!!!!||||||.!.:!!:!!!:!||||||!:! ! 938 bp eLysGluCysIleGluGluValGlnSerAspTrpLysGlu++ 303456 : CAAAGAATGTATAGAAGAGGTGCAAAGTGATTGGAAAGAGgt................ : 303499 123 : on 1 >>>> AlaLysArgGluHisAspArgGluValMetLeuArgAsnAlaArgIl : 137 !.!:!! ! ...|||||||||:!!||||||!:! !!!.!!:!!! ++ValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMe 303500 : .........agGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAAT : 304480 138 : eGlyArgThrIleAlaGlyValCysAlaLeuIleMetGlnGlyGlyIleLeuSerTyr : 156 :||||||!.!:!:.!! !:!!||||||:!!.!!||| ! !||| ! !! !||| tGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIleTyr 304481 : GGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATTTAT : 304537 157 : AsnLeuAlaArgGlyMetSerProIleIleGluValIleGlyAsnGluThrValAlaP : 176 :!! !!.!! ! !.!.:!! ! ! ! ! !:!:! !.!. ! !.! !.!!. HisThrValMetGlnPheAla---ThrGlyThrTyrValAspGluTyrAsnArgThrI 304538 : CACACGGTCATGCAGTTCGCG---ACCGGAACGTATGTGGATGAGTATAATCGTACGA : 304594 177 : heGlyArgLeuProCysProSerPheAsnMetIleValAspThrArgPheSerProVa : 195 !! !! !||| !! !|||!!!!:!!:! :!! !!|||..!!:! ||||||:! leLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIl 304595 : TTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTAT : 304651 196 : lTyrGluValValLeuValPheGlnPheLeuSerIleIleValValAsnAsnValThr : 214 !||||||:!!|||! ! !! !!!!.! !:!!!!! ! !|||:!! !!::!:!!||| eTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThr 304652 : TTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACC : 304708 215 : IleGlyGlyCysGlyLeuThrAlaValPheAlaMetHisAlaCysGlyGlnLeuAsnM : 234 !|||!.!|||||||||.!!|||:!!||||||! |||||||||||||||:!!:!!! AlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspI 304709 : GCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATA : 304768 235 : etValMetLeuArgLeuHisGluLeuValAsnGluLys : 246 !:||||||! !|||||| !!!:|||||||||...||| leValMetSerArgLeuGlyAspLeuValAsnSerLys 304769 : TCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAA : 304806 vulgar: CbirOr17PSE 11 246 . KQ414889.1 303175 304806 + 333 M 24 72 G 3 0 M 83 249 5 0 2 I 0 934 3 0 2 M 42 126 G 1 0 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303176 304806 333 + . gene_id 14 ; sequence CbirOr17PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303176 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303176 303496 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304806 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304806 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 303176 304806 333 + . alignment_id 14 ; Query CbirOr17PSE ; Align 303176 12 72 ; Align 303248 39 249 ; Align 304435 122 126 ; Align 304561 165 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 316 Query range: 10 -> 260 Target range: 226906 -> 227653 11 : AspThrTyrArgArgAspAsnAspTyrSerLeuGlnValAsnArgTrpLeuLeuLysS : 30 :!! !|||!:!..! !! :!! |||:!!|||:!!|||||||||||||||||| AsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysP 226907 : AACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAAC : 226964 31 : erIleGlyAlaTrpProGluSerSerMetLysTyrSerValThrArgAsnIleLeuLy : 49 !!:!!||| !|||||| |||||| ||| !||| !! ! !!!.. !!!!.. roLeuGlyIleTrpPro---SerSerArgLysSerSerArgIleGlyArgCysPheSe 226965 : CACTCGGTATCTGGCCG---TCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTC : 227018 50 : sThrValLeuArgLeuThrCysHisLeuLeuIleAlaPheThrValValProSerMet : 68 . !:!!:!! !!!!! !|||:!! !|||!!:::!||| !:!!||| !!||| rTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGly 227019 : CTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGC : 227075 69 : LeuTyrIleIlePheGluGluLysAspPheArgLeuArgLeuLysAlaValGlyProP : 88 ||||||:!::!!.!.|||! !|||! ! ! ! !! !|||||| !:!!||||||. LeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProM 227076 : TTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGA : 227135 89 : heSerHisCysLeuMetGlyGlyIleAsnTyrCysSerLeuLeuHisHisGlySerHi : 107 !.||| !! ! !|||..! !:!!!!.|||! !! !||| ! !|||! !..! ! etSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAs 227136 : TGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGA : 227192 108 : sIleArgArgSerIleGluHisMetGluAsnAspTrpArgMetAlaLysArgGluHis : 126 !|||! !..!!!!:!!|||!..!!::!! ||||||!:!! !!:! ! !.!. pIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGlu 227193 : CATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAG : 227249 127 : AspArgGluValMetLeuArgAsnAlaArgIleGlyArgThrIleAlaGlyValCysA : 146 ||||||.!.||||||:!!! ! !!||| ! !||||||! !:!: ! !:!!|||. AspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysT 227250 : GACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCA : 227309 147 : laLeuIleMetGlnGlyGlyIleLeuSerTyrAsnLeuAlaArgGlyMetSerProIl : 165 !!!!!.!!:!: .........::: ::: :!!!.! ! !!!:!:! !! hrPhePheValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGl 227310 : CGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGG : 227366 166 : eIleGluValIleGlyAsnGluThrValAlaPheGlyArgLeuProCysProSerPhe : 184 !! !! !.!! ! !:!!! !!.! !::!!:! !!:!:!!|||! !|||! ! ySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPhePro 227367 : AAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCA : 227423 185 : AsnMetIleValAspThrArgPheSerProValTyrGluValValLeuValPheGlnP : 204 !!.!!:|||!.!|||..!|||!:!|||||| !! !!|||:!! !!!!! ! ! |||| LysIleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnP 227424 : AAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAAT : 227483 205 : heLeuSerIleIleValValAsnAsnValThrIleGlyGlyCysGlyLeuThrAlaVa : 223 ||:!!!!! !||||||:!!:!!..!|||||| !!.!!.!|||.!!:!!.!!|||:! heValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLe 227484 : TTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCT : 227540 224 : lPheAlaMetHisAlaCysGlyGlnLeuAsnMetValMetLeuArgLeuHisGluLeu : 242 !.!!|||:!:|||||||||||||||:!!.!.:!!:!!:!!! ! !!||| .!.||| uLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeu 227541 : GCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTG : 227597 243 : ValAsnGluLysArgGluPheLeuSerArgMetGluThrValIleArgGlnIle : 260 :!!:!!! !:! !!!:.!. !!.!! !:!!!!: ! !||| !...||| IleAspGlyArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIle 227598 : ATCGACGGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATC : 227653 vulgar: CbirOr17PSE 10 260 . KQ414889.1 226906 227653 + 316 M 25 75 G 1 0 M 224 672 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226907 227653 316 + . gene_id 15 ; sequence CbirOr17PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226907 227653 . + . KQ414889.1 exonerate:protein2genome:local exon 226907 227653 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226907 227653 316 + . alignment_id 15 ; Query CbirOr17PSE ; Align 226907 11 75 ; Align 226982 37 672 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 247 Query range: 281 -> 371 Target range: 277371 -> 277713 282 : GluLeuHisGluGluSerAlaAsnThrIleIleSerTyrIleMetValLeuIleSerM : 301 |||! ! !!!:.....!!.!.!.|||!!:! !!!!:!!.!!|||:!!|||||||||| GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 302 : etMetPheAsnIlePheIlePheCysPhePheGlyGluLeuValMetAspGln >>> : 319 || |||||||||||| ! ! |||!:!.!!||||||:!!:!!! !!:||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 320 : > Target Intron 1 >>>> CysLysLysValGlyGluAlaAlaTyrMetThrA : 330 72 bp ||||||||||||||||||!.!!.!|||||||||| ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 331 : snTrpTyrTyrLeuProArgLysThrValPheAlaLeuIleLeuIleIleLeuArgSe : 349 ||||||||||||||||| !||| !:!!.!! !|||:!!|||||||||! !||||| snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 350 : rArgIleThrValLysIleThrAlaAlaLysValPheHisMetSerIleAlaThrPhe : 368 |!!!:::...:::||||||||||||...|||:::......||||||:!: !|||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 369 : GlyValVal : 371 |||! !||| GlyAspVal 277703 : GGCGATGTA : 277713 vulgar: CbirOr17PSE 281 371 . KQ414889.1 277371 277713 + 247 M 37 111 5 0 2 I 0 68 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277713 247 + . gene_id 16 ; sequence CbirOr17PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277713 247 + . alignment_id 16 ; Query CbirOr17PSE ; Align 277372 282 111 ; Align 277555 319 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 235 Query range: 281 -> 371 Target range: 272836 -> 273176 282 : GluLeuHisGluGluSerAlaAsnThrIleIleSerTyrIleMetValLeuIleSerM : 301 |||! ! !!!:.!...! !.!.!:!:!!! !!!!|||.!!|||:!!|||||||||| GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 302 : etMetPheAsnIlePheIlePheCysPhePheGlyGluLeuValMetAspGln >>> : 319 || ||||||||||||||| |||!:!.!!||||||:!!:!!! !!!:::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 320 : > Target Intron 1 >>>> CysLysLysValGlyGluAlaAlaTyrMetThrA : 330 70 bp |||||||||:::||||||!.!!.!|||||||||| ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 331 : snTrpTyrTyrLeuProArgLysThrValPheAlaLeuIleLeuIleIleLeuArgSe : 349 ||||||||||||||||| !!||| !:!!.!!! !|||||||||||||||! !|||!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 350 : rArgIleThrValLysIleThrAlaAlaLysValPheHisMetSerIleAlaThrPhe : 368 !!!!:!!..!:!!||||||||||||!.!!:!:!! !!! !||||||:!: !|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 369 : GlyValVal : 371 |||! !||| GlyAspVal 273166 : GGCGATGTA : 273176 vulgar: CbirOr17PSE 281 371 . KQ414889.1 272836 273176 + 235 M 37 111 5 0 2 I 0 66 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273176 235 + . gene_id 17 ; sequence CbirOr17PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273176 235 + . alignment_id 17 ; Query CbirOr17PSE ; Align 272837 282 111 ; Align 273018 319 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 188 Query range: 317 -> 373 Target range: 254271 -> 254439 318 : GlnCysLysLysValGlyGluAlaAlaTyrMetThrAsnTrpTyrTyrLeuProArgL : 337 |||||| !||||||||||||!.!!.!|||||||||:!!|||||||||||||||!:!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 338 : ysThrValPheAlaLeuIleLeuIleIleLeuArgSerArgIleThrValLysIleTh : 356 :!! !:!!.!!! !||||||||||||||| !||||||!.!:!:..!|||:!!||||| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 357 : rAlaAlaLysValPheHisMetSerIleAlaThrPheGlyValValMetGln : 373 ||||...|||:::||||||||||||:!! !|||||||||! !|||! :!! rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGlu 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAA : 254439 vulgar: CbirOr17PSE 317 373 . KQ414889.1 254271 254439 + 188 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254439 188 + . gene_id 18 ; sequence CbirOr17PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254439 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254439 188 + . alignment_id 18 ; Query CbirOr17PSE ; Align 254272 318 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 185 Query range: 317 -> 373 Target range: 238625 -> 238793 318 : GlnCysLysLysValGlyGluAlaAlaTyrMetThrAsnTrpTyrTyrLeuProArgL : 337 |||||| !||||||||||||!.!!.!|||||||||:!!|||||||||||||||!:!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 338 : ysThrValPheAlaLeuIleLeuIleIleLeuArgSerArgIleThrValLysIleTh : 356 :!! !:!!.!!! !||||||||||||||| !||||||!.!:!:..!||||||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 357 : rAlaAlaLysValPheHisMetSerIleAlaThrPheGlyValValMetGln : 373 ||||!.!||||||!!.|||||||||:!! !|||||||||! !|||! :!! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGlu 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAA : 238793 vulgar: CbirOr17PSE 317 373 . KQ414889.1 238625 238793 + 185 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238793 185 + . gene_id 19 ; sequence CbirOr17PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238793 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238793 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238793 185 + . alignment_id 19 ; Query CbirOr17PSE ; Align 238626 318 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 182 Query range: 11 -> 242 Target range: 194150 -> 194831 12 : ThrTyrArgArgAspAsnAspTyrSerLeuGlnValAsnArgTrpLeuLeuLysSerI : 31 !.!|||!:! !|||!.!!!:|||:!!:!!!:!||| !:! !||||||! ! !!| AsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProI 194151 : AATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGA : 194208 32 : leGlyAlaTrpProGluSerSerMetLysTyrSerValThrArgAsnIleLeuLysTh : 50 ||||| !||||||..!..!..! !..! !..!||| .!! !:!!|| leGlyIleTrpProArgGluAspSerLeuArgAspArgValArgLeuPheAlaGlnTh 194209 : TCGGTATCTGGCCAAGGGAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAAC : 194265 51 : rValLeuArgLeuThrCysHisLeuLeuIleAlaPheThrValValProSerMetLeu : 69 |! !:!! ! ! !|||!!:..!||| !:!!|||||| !:!!:!! rGlyVal---------ValPheAlaLeuMetCysPheLeuLeuValProHisValIle 194266 : TGGCGTG---------GTCTTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATC : 194313 70 : TyrIleIlePheGluGluLysAspPheArgLeuArgLeuLysAlaValGlyProPheS : 89 |||! ! !|||!!: :!!|||.!.! ! ! !:!!|||!.!:!!!.! !! TyrThrTyrPheAspCysGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnV 194314 : TACACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAG : 194373 90 : erHisCysLeuMetGlyGlyIleAsnTyrCysSerLeuLeuHisHisGlySerHisIl : 108 ! ! !!|||:!!!.! !|||!!.!:!!! !!!:!!:!! :!! !!!.!.!.|| alPheSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnArgLysGluIl 194374 : TGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGAT : 194430 109 : eArgArgSerIleGluHisMetGluAsnAspTrpArgMetAlaLysArgGluHisAsp : 127 |||| !!!!:!: !.!.||||||!...!.!::||| !.!:!! !!|||.!.||| eArgPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCysGluGluAsp 194431 : CAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGAT : 194487 128 : ArgGluValMetLeuArgAsnAlaArgIleGlyArgThrIleAlaGlyValCysAlaL : 147 |||:!!|||||| !!.! !|||!:!||||||||| !.!!.!! !:!!! ! ! ArgGlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuG 194488 : CGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGG : 194547 148 : euIleMetGlnGlyGlyIleLeuSerTyrAsnLeuAlaArgGlyMetSerProIleIl : 166 !:!! ! |||||| !||| !!|||:!!:!! !! ! !:!!! ! !! lyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSer---Gl 194548 : GACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCG---GA : 194601 167 : eGluValIleGlyAsnGluThrValAlaPheGlyArgLeuProCysProSerPheAsn : 185 ..!:!!:!! !.!.!!:!.! !.!! !! !||||||! ! !||| ! !! uArgIleValLysGluAspAsnSerThrGlnIleProLeuProTyrLeuSerAsnTyr 194602 : GAGGATTGTCAAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGCAACTAT : 194658 186 : MetIleValAspThrArgPheSerProValTyrGluValValLeuValPheGlnPheL : 205 :!:.!! !!! ! !..! !||||||:!!||||||:!!..!!!!|||! |||.!.| ValPhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerGlnIleL 194659 : GTTTTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATAC : 194718 206 : euSerIleIleValValAsnAsnValThrIleGlyGlyCysGlyLeuThrAlaValPh : 224 ||! !! !! !:!!:!! :::..!!.! !||| !! !.!!|||..!|||..!.! euIleSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAlaThrIl 194719 : TGATTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTAT : 194775 225 : eAlaMetHisAlaCysGlyGlnLeuAsnMetValMetLeuArgLeuHisGluLeu : 242 ! !||||||..!|||||| !!!!.!.:!!..!! !|||:!!.!. :!! eIleMetHisCysCysGlyLeuPheGluValThrSerArgArgMetGluThrIle 194776 : TATTATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGATGGAGACTATT : 194831 vulgar: CbirOr17PSE 11 242 . KQ414889.1 194150 194831 + 182 M 41 123 G 3 0 M 109 327 G 1 0 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194151 194831 182 + . gene_id 20 ; sequence CbirOr17PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194151 194831 . + . KQ414889.1 exonerate:protein2genome:local exon 194151 194831 . + . insertions 0 ; deletions 4 KQ414889.1 exonerate:protein2genome:local similarity 194151 194831 182 + . alignment_id 20 ; Query CbirOr17PSE ; Align 194151 12 123 ; Align 194274 56 327 ; Align 194601 166 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 317 -> 373 Target range: 244655 -> 244823 318 : GlnCysLysLysValGlyGluAlaAlaTyrMetThrAsnTrpTyrTyrLeuProArgL : 337 |||||| !||||||||||||!.!!.!|||||||||:!!|||||||||||||||!:!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 338 : ysThrValPheAlaLeuIleLeuIleIleLeuArgSerArgIleThrValLysIleTh : 356 :!! !:!!.!!! !||||||||||||||| !||||||!.!!!:..!|||:!!||||| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 357 : rAlaAlaLysValPheHisMetSerIleAlaThrPheGlyValValMetGln : 373 ||||!.!||||||!!.|||||||||:!! !|||||||||! !|||! :!! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGlu 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAA : 244823 vulgar: CbirOr17PSE 317 373 . KQ414889.1 244655 244823 + 180 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244823 180 + . gene_id 21 ; sequence CbirOr17PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244823 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244823 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244823 180 + . alignment_id 21 ; Query CbirOr17PSE ; Align 244656 318 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 247 -> 320 Target range: 224137 -> 224440 248 : GluPheLeuSerArgMetGluThrValIleArgGlnIleCysPheValGluLeuValG : 267 ..!||||||!!!!.!! |||! !!.!:!:!:!|||:!!! |||||||||!!!:!!| ArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValGluPheLeuG 224138 : AGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGGAATTTCTAG : 224195 268 : lyCysThrPheAsnLeuCysMetLeuGlyTyrTyrThrIleThr >>>> Target : 282 |||||! !!!.|||:!!|||:!:||||||||||||..!|||..! 84 lyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleVal++ 224196 : GCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTGgt............ : 224242 283 : Intron 1 >>>> GluLeuHisGluGluSerAlaAsnThrIleIleSerTyrIleM : 296 bp ||| ...... ! !!.!!:! :!:!!!|||.!!! ++GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheI 224243 : .............aggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCA : 224366 297 : etValLeuIleSerMetMetPheAsnIlePheIlePheCysPhePheGlyGluLeuVa : 315 !::!!|||!!:|||::: |||||||||||||||||||||:::...||||||||||| leLeuLeuMetSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuVa 224367 : TACTACTCATGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGT : 224423 316 : lMetAspGlnCysLys : 320 | !!:||| ||| lAlaGluGlnValLys 224424 : AGCTGAAcaggtgaaa : 224440 vulgar: CbirOr17PSE 247 320 . KQ414889.1 224137 224440 + 175 M 34 102 5 0 2 I 0 80 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224138 224440 175 + . gene_id 22 ; sequence CbirOr17PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224138 224239 . + . KQ414889.1 exonerate:protein2genome:local exon 224138 224239 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224240 224241 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224240 224323 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224322 224323 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224324 224440 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224440 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224138 224440 175 + . alignment_id 22 ; Query CbirOr17PSE ; Align 224138 248 102 ; Align 224324 282 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 317 -> 368 Target range: 283276 -> 283429 318 : GlnCysLysLysValGlyGluAlaAlaTyrMetThrAsnTrpTyrTyrLeuProArgL : 337 |||||||||||||||||||||!.!!.!||||||||||||! !!:!||||||||| !| GlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProAspL 283277 : CAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCGACA : 283334 338 : ysThrValPheAlaLeuIleLeuIleIleLeuArgSerArgIleThrValLysIleTh : 356 || !:!!.!! !|||:!!|||||||||! !||||||!!!:::...:::|||||||| ysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIleTh 283335 : AAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaattac : 283391 357 : rAlaAlaLysValPheHisMetSerIleAlaThrPhe : 368 ||||:::|||:::......|||||| !|||||| rAlaSerLysLeuIleGlnMetSerAlaTyrThrPhe 283392 : cgctagcaaattaattcaaatGTCCGCGTACACGTTC : 283429 vulgar: CbirOr17PSE 317 368 . KQ414889.1 283276 283429 + 153 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283277 283429 153 + . gene_id 23 ; sequence CbirOr17PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283277 283429 . + . KQ414889.1 exonerate:protein2genome:local exon 283277 283429 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283277 283429 153 + . alignment_id 23 ; Query CbirOr17PSE ; Align 283277 318 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 184 -> 248 Target range: 202706 -> 202898 185 : AsnMetIleValAspThrArgPheSerProValTyrGluValValLeuValPheGlnP : 204 ....!.|||:!!|||..!|||!:!||||||||| !!|||:!! !!!!! !.!!!:!. GlyPheIleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgI 202707 : GGATTTATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAA : 202764 205 : heLeuSerIleIleValValAsnAsnValThrIleGlyGlyCysGlyLeuThrAlaVa : 223 !!:!!:!!:!!|||:!!:!!:!!..!||||||:!!|||!.!||| !!|||||||||:! leValAlaValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLe 202765 : TCGTAGCTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTT : 202821 224 : lPheAlaMetHisAlaCysGlyGlnLeuAsnMetValMetLeuArgLeuHisGluLeu : 242 !||||||:!:|||! !|||||||||:!!:!!:!::!!||| ! !!|||.!..!.||| uPheAlaValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeu 202822 : GTTTGCGGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTG : 202878 243 : ValAsnGluLysArgGlu : 248 :!!:!!! ::: !!!: MetAspGlyArgSerAsp 202879 : ATGGATGGTCGTTCGGAT : 202898 vulgar: CbirOr17PSE 184 248 . KQ414889.1 202706 202898 + 146 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202707 202898 146 + . gene_id 24 ; sequence CbirOr17PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202707 202898 . + . KQ414889.1 exonerate:protein2genome:local exon 202707 202898 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202707 202898 146 + . alignment_id 24 ; Query CbirOr17PSE ; Align 202707 185 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 313 -> 379 Target range: 214848 -> 215046 314 : LeuValMetAspGlnCysLysLysValGlyGluAlaAlaTyrMetThrAsnTrpTyrT : 333 :!!:!!:!:.!.|||||||||||||||||||||!.!:!!||||||! !.!.|||||| IleMetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrA 214849 : ATTATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACC : 214906 334 : yrLeuProArgLysThrValPheAlaLeuIleLeuIleIleLeuArgSerArgIleTh : 352 |||||| !!!!.! ! !.!!..!! !|||||||||!!: !! !|||!.! !:! rgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSe 214907 : GATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATC : 214963 353 : rValLysIleThrAlaAlaLysValPheHisMetSerIleAlaThrPheGlyValVal : 371 !||||||.!!||||||!.!!!.:!! ! .!.:!!||||||::!||||||.!! !||| rValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214964 : CGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215020 372 : MetGlnLysAspSerLeuAlaTyr : 379 ! |||.!. !! ! !||| SerIleLysGlnLeuProLeuTyr 215021 : AGTATCAAACAACTTCCATTATac : 215046 vulgar: CbirOr17PSE 313 379 . KQ414889.1 214848 215046 + 135 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214849 215046 135 + . gene_id 25 ; sequence CbirOr17PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214849 215046 . + . KQ414889.1 exonerate:protein2genome:local exon 214849 215046 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214849 215046 135 + . alignment_id 25 ; Query CbirOr17PSE ; Align 214849 314 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 319 -> 371 Target range: 305627 -> 305783 320 : LysLysValGlyGluAlaAlaTyrMetThrAsnTrpTyrTyrLeuProArgLysThrV : 339 !..!..|||||| !:!!..!!:!|||! !!:!||||||:!!||||||! !||||||: SerSerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrI 305628 : AGTAGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGA : 305685 340 : alPheAlaLeuIleLeuIleIleLeuArgSerArgIleThrValLysIleThrAlaAl : 358 !! !!.!||||||||||||||| !! !|||!!!! ! !!!.!||||||!:!|||!. leHisGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGl 305686 : TACATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGG : 305742 359 : aLysValPheHisMetSerIleAlaThrPheGlyValVal : 371 !|||||| !! !!:!:|||:!!:!!||||||||| !||| yLysValValAspLeuSerLeuSerThrPheGlyAsnVal 305743 : TAAAGTAGTTGATTTATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: CbirOr17PSE 319 371 . KQ414889.1 305627 305783 + 123 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305628 305783 123 + . gene_id 26 ; sequence CbirOr17PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305628 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305628 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305628 305783 123 + . alignment_id 26 ; Query CbirOr17PSE ; Align 305628 320 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 317 -> 348 Target range: 261922 -> 262015 318 : GlnCysLysLysValGlyGluAlaAlaTyrMetThrAsnTrpTyrTyrLeuProArgL : 337 ||||||..!|||||||||!!:!.!!.!||||||||||||||||||||||||||| !| GlnCysSerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuProAspL 261923 : CAGTGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACCTGATA : 261980 338 : ysThrValPheAlaLeuIleLeuIleIleLeuArg : 348 ||!:!:!!.!!! !||||||||||||||| !||| ysSerIleLeuAspLeuIleLeuIleIleAlaArg 261981 : AAAGTATCCTTGATTTGATTTTGATCATTGCACGA : 262015 vulgar: CbirOr17PSE 317 348 . KQ414889.1 261922 262015 + 119 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261923 262015 119 + . gene_id 27 ; sequence CbirOr17PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 261923 262015 . + . KQ414889.1 exonerate:protein2genome:local exon 261923 262015 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 261923 262015 119 + . alignment_id 27 ; Query CbirOr17PSE ; Align 261923 318 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 317 -> 371 Target range: 230244 -> 230406 318 : GlnCysLysLysValGlyGluAlaAlaTyrMetThrAsnTrpTyrTyrLeuProArgL : 337 ||||||!:!|||||||||||| !:!!||||||! !.!.|||||| ||| !! !!! GlnCysArgLysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyA 230245 : CAGTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAA : 230302 338 : ysThrValPheAlaLeuIleLeuIleIleLeuArgSerArgIleThrValLysIleTh : 356 !.! ! !.!!..!! !|||||||||||| !! !|||!.! !:!!..!|||.!!|| snLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheTh 230303 : ACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTAC : 230359 357 : rAlaAlaLysValPheHisMetSerIleAlaThrPheGlyValVal : 371 ||||!.!!!.:!! !!.!.:!:|||:!! !||||||.!!! !||| rAlaGlyAsnMetValGluLeuSerValAsnThrPheSerAspVal 230360 : AGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGACGTA : 230406 vulgar: CbirOr17PSE 317 371 . KQ414889.1 230244 230406 + 111 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230245 230406 111 + . gene_id 28 ; sequence CbirOr17PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230245 230406 . + . KQ414889.1 exonerate:protein2genome:local exon 230245 230406 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230245 230406 111 + . alignment_id 28 ; Query CbirOr17PSE ; Align 230245 318 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 281 -> 318 Target range: 214629 -> 214740 282 : GluLeuHisGluGluSerAlaAsnThrIleIleSerTyrIleMetValLeuIleSerM : 301 |||! !:!!..!.!.!:! !!..|||! !:!!!!!|||:!::!!:!!! !||||||: GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValValLeuTyrIleSerL 214630 : gAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGGTGTTGTATATCTCTC : 214687 302 : etMetPheAsnIlePheIlePheCysPhePheGlyGluLeuValMetAspGln : 318 :: |||||||||||||||||||||::!.!.|||||||||||| !!:||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValSerGluGln 214688 : tcactttcaatattttcatattttgttaCATAGGCGAGCTTGTGTCTGAACAG : 214740 vulgar: CbirOr17PSE 281 318 . KQ414889.1 214629 214740 + 101 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214630 214740 101 + . gene_id 29 ; sequence CbirOr17PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214630 214740 101 + . alignment_id 29 ; Query CbirOr17PSE ; Align 214630 282 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 491 Query range: 6 -> 371 Target range: 217240 -> 219800 7 : ThrThrProGluMetIleCysLysThrLeuLeuIleValIleCysCysIleMetIleC : 26 |||! ! !!..!! ||| ! ! ! !|||:!!! !!.!:!!|||! ! !:!!||| ThrArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIleS 217241 : ACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTACGGTTTGATAA : 217298 27 : ysPheAsnIleValLeuTyrThrPheTyrCysIlePheAsnThrGluAsnAspProAr : 45 !!||| .!!|||! !! !:!!.!.||| .!!.!!.!...!||| |||! ! erPheLeuPheValProCysSerMetTyrValPheLeuGluValGlu---AspLeuTy 217299 : GCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAA---GATCTCTA : 217352 46 : gAlaLysLeuLysLeuThrAlaProIleIleTyrCysMetThrAlaPheAlaLysTyr : 64 !! !|||||||||||| !!.!|||:!:|||!:!|||:!!! !||||||!.!|||||| rAspLysLeuLysLeuPheGlyProLeuIlePheCysValMetAlaPheValLysTyr 217353 : CGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTAT : 217409 65 : ValThrPheIleIleHisGluGlyAspIleLysThrCysLeuLysHisValThrAsnA : 84 !:!!.!.|||:!!|||:!!!.!||||||::: !|||:!!!:!...:!! !...| TyrSerLeuIleValHisLysAlaAspIleArgGluCysValArgArgIleGluArgA 217410 : TACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACGGG : 217469 85 : spTrpLysPheLeuAlaAsnValProAsnAlaArgAspAlaMetIleValAsnAlaLy : 103 |||||!:! !:!! !.. ! !!!.! !|||!!:||||||||||||||||||!! spTrpArgAsnVal---ArgCysGluLysAspArgGluAlaMetIleValAsnAlaAs 217470 : ACTGGAGGAATGTC---AGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAA : 217523 104 : sThrAlaArgLysLeuPheThrValCysCysThrIleLeuTyrPheThrSerLeuLeu : 122 . !!.!||||||||| !! !:!!||| ! !.!!:!!||| ! :::... nPheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheValPhe 217524 : TTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcgttttt : 217580 123 : TyrHisLeuThr<->ProLeuIleGluGlyAsnIle<->AspIleAspGluAsnAlaT : 140 |||:::::!.!! |||:!!! !! !|||!..||| ... :!!! !||| !| TyrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuT 217581 : tattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTA : 217640 141 : hrIleLysLeuLeuIleAsnSerSerGlnLeuSerIleLeuAspGlnArgArgAsnHi : 159 ||.!!! ! !|||:!: ! !!! ! ! !! !|||:!!||| ||| !!.!! hrPheIleProLeuValPheProPheThrLysTyrIleIleAspThrArgTyrThrPr 217641 : CCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCC : 217697 160 : sAlaPheGluIleValPheLeuLeuGlnPhePheGlyGlyPheIleIleCysThrLeu : 178 !.!! !||||||||||||!!!||||||!!..!!!.!||| !:!:!!: ! !:!! oThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIle 217698 : TACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATC : 217754 179 : ThrIleAlaLeuTyrGlyLeuAsnAlaLeuLeuValMetHisThrCysAlaGlnMetT : 198 ||| ||| !! !.!!||| ||| !!!!!.!:!:|||.!!|||!.!|||!!: ThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleG 217755 : ACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCG : 217814 199 : hrIleLeuMetThrLeuIleLysMetLeuSerGlyGluGluAlaCysLysGlyArgAs : 217 !:!:||||||!.!! !:!::!! |||! !! !! ..!||| !! !.!! !!. luValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgAlaAspMetSerAspTh 217815 : AGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGAGCGGATATGAGCGATAC : 217871 218 : nValAspGluArgLeuAlaIleValValGluHisGlnThrArgThrArg{Se} >>> : 234 !||||||! |||:!!|||! !:!!|||...!!.!!...!|||! ! !{!.} rValAspGlyArgIleAlaSerIleValSerGlnHisValArgIleLeu{Ly}++ 217872 : TGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTA{AA}gt... : 217926 235 : > Target Intron 1 >>>> {r}PheLeuSerLeuValGluLysThrLeuGlnH : 245 1229 bp {!}||||||:!!|||..!|||!:!|||||||||! ++{s}PheLeuThrLeuThrGluArgThrLeuGlnG 217927 : ......................ag{a}tttttgaCGCTCACAGAGAGAACCCTCCAGC : 219184 246 : isGlySerLeuPheAspValLeuGlyCysThrMetLeuIleCysLeuValGlyTyrCy : 264 !. !|||!!! !!!: !!||||||||||||||| !||||||||||||||||||! lnIleSerPheAlaGluPheLeuGlyCysThrMetAspIleCysLeuValGlyTyrTy 219185 : AAATCTCTTTCGCTGAATTTCTAGGATGCACCATGGACATATGTCTCGTTGGATATTA : 219241 265 : sIleLeuIle >>>> Target Intron 2 >>>> GluTrpGlnAspGlyAsnI : 274 !|||:!!:!: 76 bp ||||||:!!.....!:!!: rIleIleVal++ ++GluTrpLysSerAsnAspV 219242 : CATTATCGTGgt.........................agGAATGGAAATCGAATGATG : 219347 275 : leAlaAsnThrCysThrPheLeuPheAlaLeuIleSerAsnLeuValAsnIlePheVa : 293 !!.!!!:!.!! |||!:!:!!.!! !||||||||| |||||||||:: alThrSerAlaValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIl 219348 : TAACGAGTGCAGTGACATACATCATTCTACTTATATCCCTcactttcaacattttcat : 219404 294 : lLeuCysTyrIleGlyGluHisIleThrAlaVal >>>> Target Intron 3 > : 305 :...||||||||||||||| !:!!.!!! ! 73 bp ePheCysTyrIleGlyGluIleValAlaGluGln++ 219405 : attttgctaCATAGGAGAGATCGTTGCTGAACAggt...................... : 219442 306 : >>> AlaAspGlnValAlaTrpThrThrAsnMetLeuGluTrpTyrArgLeuProTh : 322 ... ::::::... :!! !!|||:!!||||||||||||||| !! ++CysArgLysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGl 219443 : ...agTGtaggaaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGG : 219564 323 : rAsnLysThrArgAsnIleValLeuIleIleIleThrSerHisIleProLeuLysIle : 341 !!!.|||! !! ! ! !||||||! !||| !! !|||:!! ! !!:!!|||:!: yLysLysLysLeuTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeu 219565 : AAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTG : 219621 342 : ThrAlaGlyLysLeuValValLeuSerPheArgThrPheGlyAsn >>>> Target : 357 |||||||||!!.:!!|||! !||||||.!!!!!|||||| !:!! 8 ThrAlaGlyAsnMetValGluLeuSerIleSerThrPheThrAsp++ 219622 : ACAGCCGGAAATATGGTCGAATTGTCTATCAGCACTTTTACCGACgt........... : 219671 358 : Intron 4 >>>> ValValLysSerAlaValAlaTyrLeuAsnIleLeuArgThr : 370 7 bp |||||||||!!!||||||.!!!:!||||||:!!||||||||| ++ValValLysThrAlaValThrPheLeuAsnValLeuArgThr 219672 : ..............agGTCGTTAAGACTGCAGTCACGTTTCTGAATGTACTACGAACA : 219795 371 : Val : 371 :!! Leu 219796 : TTG : 219800 vulgar: CbirOr12 6 371 . KQ414889.1 217240 219800 + 491 M 35 105 G 1 0 M 46 138 G 1 0 M 37 111 G 0 3 M 7 21 G 0 3 M 100 300 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 37 111 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 83 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217241 219800 491 + . gene_id 1 ; sequence CbirOr12 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217241 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217241 217923 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219668 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219668 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219669 219670 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219669 219755 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 219754 219755 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219756 219800 . + . KQ414889.1 exonerate:protein2genome:local exon 219756 219800 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217241 219800 491 + . alignment_id 1 ; Query CbirOr12 ; Align 217241 7 105 ; Align 217346 43 138 ; Align 217484 90 111 ; Align 217598 127 21 ; Align 217622 134 300 ; Align 219154 235 99 ; Align 219329 268 111 ; Align 219513 305 156 ; Align 219756 357 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 435 Query range: 15 -> 357 Target range: 212965 -> 215022 16 : LeuLeuIleValIleCysCysIleMetIleCysPheAsnIleValLeuTyrThrPheT : 35 |||:!!! !..!:!!|||! ! !:!!||| !!!:! !:!!:!!! !! !!:!!!.| LeuValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuT 212966 : TTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGT : 213023 36 : yrCysIlePheAsnThrGluAsnAspProArgAlaLysLeuLysLeuThrAlaProIl : 54 || .!!.!!:!!..!|||||| ::: ::::!!:!!||| !!.! !.! yrValPheLeuAspValGluAsnIlePheLys---GluIleGluLeuPheGlyIlePh 213024 : ACGTGTTCCTCGACGTAgagaatatatttaaa---gagaTCGAATTGTTCGGCATTTT : 213077 55 : eIleTyrCysMetThrAlaPheAlaLysTyrValThrPheIleIleHisGluGlyAsp : 73 ! !!:!|||:!!.!!|||.!. !|||||| !:!!!!.|||:!!|||! ! !||| eAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAsp 213078 : TGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGAT : 213134 74 : IleLysThrCysLeuLysHisValThrAsnAspTrpLysPheLeuAlaAsnValProA : 93 |||:::||||||:!!:!!|||:!!! ! !!||||||||| !:!!.!!:!!! ! !: IleArgThrCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluA 213135 : ATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGG : 213194 94 : snAlaArgAspAlaMetIleValAsnAlaLysThrAlaArgLysLeuPheThrValCy : 112 !! !:!!!: !||| :!!||||||!.. !!.!!:!!:!:!! ! |||:!!|| sp---LysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCy 213195 : AC---AAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTG : 213248 113 : sCysThrIleLeuTyrPheThrSerLeuLeuTyrHisLeuThrProLeuIleGluGly : 131 |..! !.!!:!!||| !! ! !!!!||| !|||..! !! !|||...!.! sAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAla 213249 : TGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCG : 213305 132 : Asn<-><->IleAspIleAspGluAsnAlaThrIleLysLeuLeuIleAsnSerSerG : 149 :!! :!!! ||| |||!.!|||.!!!:!! !:!!:!: ! !! !. AspLysMetValAlaGluAspLeuAsnValThrPheArgGlnMetValValProValS 213306 : GATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCT : 213365 150 : lnLeuSerIleLeuAspGlnArgArgAsnHisAlaPheGluIleValPheLeuLeuGl : 168 .! !! !|||:!!||| ||| !!:!! !!.! !|||||| !!||||||:!!|| erArgPheIleValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGl 213366 : CGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCA : 213422 169 : nPhePheGlyGlyPheIleIleCysThrLeuThrIleAlaLeuTyrGlyLeuAsnAla : 187 |.!!.!.!.!||| ! :!:||| !.!!:!!.!!:!:!.! !! !.!!||| ||| nIleIleAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAla 213423 : GATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCT : 213479 188 : LeuLeuValMetHisThrCysAlaGlnMetThrIleLeuMetThrLeuIleLysMetL : 207 :!!!!!!.!:!:|||.!!|||!.!|||||| !|||||||||!:!! !:!::!! | ValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisL 213480 : GTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATT : 213539 208 : euSerGlyGluGluAlaCysLysGlyArgAsnValAspGluArgLeuAlaIleValVa : 226 ||! !! !! ..!! ! !! !.!!!:!|||||||||!!:|||:!!|||:!!:!!|| euIleAspGlyArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleVa 213540 : TGATAGACGGTAGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGT : 213596 227 : lGluHisGlnThrArgThrArgSerPheLeuSer >>>> Target Intron 1 > : 238 |.!.!!.!!...!|||! !! !!.!!:::!!..! 840 bp lAsnGlnHisValArgIleLeuLysTrpValGlu-+ 213597 : GAACCAGCATGTGCGGATACTGAAGTGGGTGGAAtt...................... : 213634 239 : >>> LeuValGluLysThrLeuGlnHisGlySerLeuPheAspValLeuGlyCysTh : 255 ||||||||||||.!!|||!:!!!.! !|||!!! !!!::!!|||! !||||| ++LeuValGluLysAlaLeuArgGlnValSerPheAlaGluLeuLeuValCysTh 213635 : ...agCTCGTGGAGAAAGCACTTCGGCAAGTATCTTTCGCTGAATTATTAGTATGCAC : 214523 256 : rMetLeuIleCysLeuValGlyTyrCysIleLeuIle >>>> Target Intron : 268 |:!! !:!!|||||||||||||||! !|||:!!! 68 bp rValAsnLeuCysLeuValGlyTyrTyrIleIleThr++ 214524 : GGTGAATCTCTGTCTCGTTGGATATTACATAATAACGgt................... : 214564 269 : 2 >>>> GluTrpGlnAspGlyAsnIleAlaAsnThrCysThrPheLeuPheAlaLe : 284 ||||||.!......!|||:!!.!!!.!||| |||!:!:!! ! !! ++GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValValLeuTy 214565 : ......aggAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGGTGTTGTA : 214678 285 : uIleSerAsnLeuValAsnIlePheValLeuCysTyrIleGlyGluHisIleThrAla : 303 !|||||| |||||||||:::...|||||||||||||||! !:!::!!! ! rIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValSerGlu 214679 : TATCTCTCtcactttcaatattttcatattttgttaCATAGGCGAGCTTGTGTCTGAA : 214735 304 : Val >>>> Target Intron 3 >>>> AlaAspGlnValAlaTrpThrThrAs : 313 ! 123 bp ..! ! :!!|||!.! ..!:!! ! Gln++ ++CysLysLysValGlyGluValSerTy 214736 : CAGgt.........................agTGCAAAAAGGTCGGAGAAGTATCGTA : 214888 314 : nMetLeuGluTrpTyrArgLeuProThrAsnLysThrArgAsnIleValLeuIleIle : 332 !|||:!!|||||||||||||||||| !||||||! !! ! ! !:!!||||||!!: rMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMet 214889 : CATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATG : 214945 333 : IleThrSerHisIleProLeuLysIleThrAlaGlyLysLeuValValLeuSerPheA : 352 !! !|||:!! ! !!:!!|||.!!|||||||||!!.:!!|||! !||||||.!!! AlaMetSerAsnSerSerValLysPheThrAlaGlyAsnMetValGluLeuSerIleS 214946 : GCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCA : 215005 353 : rgThrPheGlyAsnVal : 357 !!||||||.!!!:!||| erThrPheSerSerVal 215006 : GCACTTTCAGCAGTGTA : 215022 vulgar: CbirOr12 15 357 . KQ414889.1 212965 215022 + 435 M 30 90 G 1 0 M 47 141 G 1 0 M 38 114 G 0 6 M 105 315 5 0 2 I 0 836 3 0 2 M 30 90 5 0 2 I 0 64 3 0 2 M 37 111 5 0 2 I 0 119 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212966 215022 435 + . gene_id 2 ; sequence CbirOr12 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212966 213631 . + . KQ414889.1 exonerate:protein2genome:local exon 212966 213631 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 213632 213633 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 213632 214471 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214470 214471 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214472 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214472 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212966 215022 435 + . alignment_id 2 ; Query CbirOr12 ; Align 212966 16 90 ; Align 213056 47 141 ; Align 213197 95 114 ; Align 213317 133 315 ; Align 214472 238 90 ; Align 214630 268 111 ; Align 214864 305 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 287 Query range: 6 -> 371 Target range: 256718 -> 258735 7 : ThrThrProGluMetIleCysLysThrLeuLeuIleValIleCysCysIleMetIleC : 26 ||||||! !||| ! ! !..!! !:!!|||! !:!!:!!|||! ! ! |||! ThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIleL 256719 : ACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATAT : 256776 27 : ysPheAsnIleValLeuTyrThrPheTyrCysIlePheAsnThrGluAsnAspProAr : 45 |||!.!:!::!!! !! ! !.!!:!! :!!||| ! !!!::!!..! ! euPheThrLeuIleProCysLeuLeuHis---ValPheLeuAspAspAspSerPheTy 256777 : TGTTCACCTTGATACCCTGTTTGCTCCAT---GTATTTCTTGACGACGACAGTTTCTA : 256830 46 : gAlaLysLeuLysLeuThrAlaProIleIleTyrCysMetThrAlaPheAlaLysTyr : 64 |||:::||| ...|||!!:! !:!!!! !!:! !::!! !|||!!.||| rMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyr 256831 : catgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTAC : 256887 65 : ValThrPheIleIleHisGluGlyAspIleLysThrCysLeuLysHisValThrAsnA : 84 ..! !.!.:!::!!!!.! ! !||||||::: !|||:!!:!!|||:!! !!..| ThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrA 256888 : ACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGG : 256947 85 : spTrpLysPheLeuAlaAsnValProAsnAlaArgAspAlaMetIleValAsnAlaLy : 103 |||||!:!.!.:!! !!..! ! !:!! !:!.!.!.!|||!!: !||||||!: spTrpArgMetValArgArgGluLysAsp---GlnGlnValMetMetLysAsnAlaAr 256948 : ATTGGAGAATGGTGAGGAGGGAGAAGGAT---CAACAAGTGATGATGAAGAACGCGAG : 257001 104 : sThrAlaArgLysLeuPheThrValCysCysThrIleLeuTyrPheThrSerLeuLeu : 122 ! !!.!||| ! :!! !||| !!|||....!!|||:!! ! ! ! ... gPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCys 257002 : ATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgt : 257058 123 : TyrHisLeuThrProLeuIleGluGlyAsnIleAspIle<-><->AspGluAsnAlaT : 140 ::: ::!:!! !! !:!:.!. !.!.||| ! ! :!!|||!...!!! PhePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrI 257059 : ttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGA : 257118 141 : hrIleLysLeuLeuIleAsnSerSerGlnLeuSerIleLeuAspGlnArgArgAsnHi : 159 !:!:::!:!!||| ! !!!! ! ! !!.!:!:|||:!! !!:!!:!! leValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerPr 257119 : TCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCC : 257175 160 : sAlaPheGluIleValPheLeuLeuGlnPhePheGlyGlyPheIleIleCysThrLeu : 178 !.!! !||||||||| !!!!!:!!||| !!::..!..!.!!||| !||| ! oThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSer 257176 : TACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGT : 257232 179 : ThrIleAlaLeuTyrGlyLeuAsnAlaLeuLeuValMetHisThrCysAlaGlnMetT : 198 |||:!!::!:!!!:!.!!||| |||:!!!!!!.!! |||.!!! !!.!|||:!!| ThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuT 257233 : ACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGA : 257292 199 : hrIleLeuMetThrLeuIleLysMetLeuSerGlyGluGluAlaCysLysGlyArgAs : 217 ||:!:||||||:!!! !|||! ! !!!! !..!|||..! ! !::: :::.. hrValLeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysTh 257293 : CTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaac : 257349 218 : nValAsp<->GluArgLeuAlaIleValValGluHisGlnThrArgThrArg{Se} : 234 . :!!!:!:!!!.!:!::!!|||||||||!!. !|||..!! !{!!} rPheProPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Ar}++ 257350 : gtttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt : 257405 235 : >>>> Target Intron 1 >>>> {r}PheLeuSerLeuValGluLysThrLeuG : 244 760 bp {!}! !:!!! !! ! !.!. ! !! !| +-{g}CysValMetTyrArgAsnLeuLeuGlnG 257406 : .........................ac{G}TGCGTTATGTACCGAAACCTGTTGCAAC : 258193 245 : lnHisGlySerLeuPheAspValLeuGlyCysThrMetLeuIleCysLeuValGlyTy : 263 ||:!!|||! ! ! ! ! ! !..!! ! !!!!:! !! ||| :: lnAsnGly***AsnArgThrTyrAsnAsnPheProIleHisSerTyrSerValIlePh 258194 : AAAATGGTTAAAATCGTACCTACAATAATTTTCCTATACACAGctattctgttatttt : 258250 264 : rCysIleLeuIleGluTrpGlnAspGlyAsnIleAlaAsnThrCysThrPheLeuPhe : 282 : ... ||||||... :::||| ||| :::::!!!!.!. eTyrTyrPheGlnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheMet 258251 : ttattattttcaggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTATG : 258307 283 : AlaLeuIleSerAsnLeuValAsnIlePheValLeuCysTyrIleGlyGluHisIleT : 302 !||||||||| ||||||||||||:::||||||||||||||| :!!| IleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLeuT 258308 : ATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATTAA : 258367 303 : hrAlaVal >>>> Target Intron 2 >>>> AlaAspGlnValAlaTrpThr : 311 ||! ! ! 90 bp ..! ! :!!|||!.! ..! hrGluGln++ ++CysLysLysValGlyAspVal 258368 : CAGAACAGgt.........................agTGCAAGAAAGTTGGCGACGTG : 258484 312 : ThrAsnMetLeuGluTrpTyrArgLeuProThrAsnLysThrArgAsnIleValLeuI : 331 ..! !!||| !!!:|||||| !|||||| !!!.!:!! !! !:!!:!!:!!|||: ValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLeuV 258485 : GTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTTGG : 258544 332 : leIleIleThrSerHisIleProLeuLysIleThrAlaGlyLysLeuValValLeuSe : 350 !!||| ! !||| !:!: !:!!:!!|||||||||||||||... ::!|| alIleAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePheHisMetSe 258545 : TAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatGTC : 258601 351 : rPheArgThrPheGlyAsn >>>> Target Intron 3 >>>> ValValLysS : 360 |.!! !||||||.!!:!! 69 bp |||:!!|||! rIleTyrThrPheSerAsp++ ++ValIleLysT 258602 : CATTTACACATTCAGCGATgt.........................agGTAATAAAAA : 258700 361 : erAlaValAlaTyrLeuAsnIleLeuArgThrVal : 371 !!:!! !!||||||||||||:!!|||||| !||| hrSerPheAlaTyrLeuAsnLeuLeuArgGlnVal 258701 : CCTCTTTCGCGTATTTGAATTTACTGCGTCAAGTA : 258735 vulgar: CbirOr12 6 371 . KQ414889.1 256718 258735 + 287 M 29 87 G 1 0 M 57 171 G 1 0 M 41 123 G 0 6 M 84 252 G 0 3 M 14 42 S 0 2 5 0 2 I 0 756 3 0 2 S 1 1 M 70 210 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256719 258735 287 + . gene_id 3 ; sequence CbirOr12 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256719 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256719 257404 . + . insertions 9 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 258164 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258163 258164 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 258165 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258165 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258735 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258735 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256719 258735 287 + . alignment_id 3 ; Query CbirOr12 ; Align 256719 7 87 ; Align 256806 37 171 ; Align 256977 95 123 ; Align 257106 136 252 ; Align 257361 220 42 ; Align 258166 235 210 ; Align 258466 305 156 ; Align 258691 357 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 268 Query range: 9 -> 226 Target range: 289813 -> 290458 10 : GluMetIleCysLysThrLeuLeuIleValIleCysCysIleMetIleCysPheAsnI : 29 ||| ! .....!..!|||||||||:!!:!!|||||| !!::!! |||! !| GluArgThrAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleI 289814 : GAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCA : 289871 30 : leValLeuTyrThrPheTyrCysIlePheAsnThrGluAsnAspProArgAlaLysLe : 48 |||||! !!:!!:! !:!! !:!!||| !:!!!:|||||| !!.!.!! :! leValProPheSerHisHisValLeuPhe---SerAspAsnAspMetAsnThrPheVa 289872 : TAGTACCGTTCAGTCATCACGTTCTATTC---AGCGACAACGACATGAACACGTTCGT : 289925 49 : uLysLeuThrAlaProIleIleTyrCysMetThrAlaPheAlaLysTyrValThrPhe : 67 !||| ! !!.!|||:!:! !:!|||:!!|||.!!||| !|||||| ! !||| lLysAsnLeuGlyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPhe 289926 : TAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTC : 289982 68 : IleIleHisGluGlyAspIleLysThrCysLeuLysHisValThrAsnAspTrpLysP : 87 ! !!!: ! ! ..!! ||| !|||:!!||||||:!! !!..|||||||||. SerMetLysGlySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysM 289983 : AGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGA : 290042 88 : heLeuAlaAsnValProAsnAlaArgAspAlaMetIleValAsnAlaLysThrAlaAr : 106 !.||| !:!! !:!! !|||! ! !|||:!! ! !!!.!! !! !::!|| etLeuArgAsp---GluAspHisArgValIleMetLeuArgTyrValThrMetSerAr 290043 : TGTTGCGTGAC---GAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCG : 290096 107 : gLysLeuPheThrValCysCysThrIleLeuTyrPheThrSerLeuLeuTyrHisLeu : 125 |!!.|||.!.! !:!!|||...! !.!!||||||.!. !.!!|||! !|||:!! ! gAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThr 290097 : GAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACT : 290153 126 : ThrProLeuIleGluGlyAsnIleAspIleAspGluAsnAlaThrIleLysLeuLeuI : 145 ..! !! !:!: ..!!!.! ..!:!::!!! |||!.!||||||!:!! !|||! ValIleProLeuPheSerLysLysSerValAsnGlyAsnValThrIleArgProLeuT 290154 : GTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGGTAACGTGACTATCAGACCTCTAA : 290213 146 : leAsnSerSerGlnLeuSerIleLeuAspGlnArgArgAsnHisAlaPheGluIleVa : 164 ! !! !!.!! ! !..!.!!!!!||| !:!!:!!:!! |||!:!|||||||| hrTyrProGlyTyrGluGluPhePheAspValGlnLysSerProAlaTyrGluIleVa 290214 : CTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGT : 290270 165 : lPheLeuLeuGlnPhePheGlyGlyPheIleIleCysThrLeuThrIleAlaLeuTyr : 183 ||||! !:!!!!.! ! !! !! !.!.|||! ...!.!:!!|||!!:||| !||| lPheCysMetHisCysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyr 290271 : CTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTAC : 290327 184 : GlyLeuAsnAlaLeuLeuValMetHisThrCysAlaGlnMetThrIleLeuMetThrL : 203 .!!|||!...!!:!!!!!!.!! |||||||||!.!|||!!:! !|||! !! !|||! SerLeuThrThrIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrA 290328 : AGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGC : 290387 204 : euIleLysMetLeuSerGlyGluGluAlaCysLysGlyArgAsnValAspGluArgLe : 222 !:!::!! |||!!! !..!! ! ! !! !!:!...|||..!!!:||||| rgLeuGluAspLeuThrLysArgGlyMetLeuLeuGluLysGlyValSerAspArgLe 290388 : GGCTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTT : 290444 223 : uAlaIleValVal : 226 ||||:!!|||||| uAlaValValVal 290445 : GGCGGTTGTTGTG : 290458 vulgar: CbirOr12 9 226 . KQ414889.1 289813 290458 + 268 M 29 87 G 1 0 M 51 153 G 1 0 M 135 405 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289814 290458 268 + . gene_id 4 ; sequence CbirOr12 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289814 290458 . + . KQ414889.1 exonerate:protein2genome:local exon 289814 290458 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289814 290458 268 + . alignment_id 4 ; Query CbirOr12 ; Align 289814 10 87 ; Align 289901 40 153 ; Align 290054 92 405 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 255 Query range: 46 -> 231 Target range: 208395 -> 208953 47 : LysLeuLysLeuThrAlaProIleIleTyrCysMetThrAlaPheAlaLysTyrValT : 66 :!!||||||:!! !::! !!:!:! !!:!! !|||! !||||||.!!|||||||||! GlnLeuLysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValI 208396 : CAATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGA : 208453 67 : hrPheIleIleHisGluGlyAspIleLysThrCysLeuLysHisValThrAsnAspTr : 85 !.!.! !:!!!.!||||||||||||::!! !|||:!!:!!:!!||| ! !||||| leMetThrValArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTr 208454 : TCATGACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTG : 208510 86 : pLysPheLeuAlaAsnValProAsnAlaArgAspAlaMetIleValAsnAlaLysThr : 104 |!:! !:!!! !:!!! ! !:!! ||| ! !|||:!:! !||||||!.. ! pArgAsnValGluHisGluGluAsp---ArgLysIleMetLeuAspAsnAlaSerPhe 208511 : GAGAAACGTGGAGCACGAGGAGGAC---AGGAAGATCATGTTGGACAACGCGAGTTTC : 208564 105 : AlaArgLysLeuPheThrValCysCysThrIleLeuTyrPheThrSerLeuLeuTyrH : 124 ||||||||||||.!!..!:!!||| ! .!!.!!:!!||| :::...|||: AlaArgLysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrT 208565 : GCCAGGAAACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctatt : 208624 125 : isLeuThr<->ProLeuIleGluGlyAsn<->IleAspIleAspGluAsnAlaThrIl : 141 :::!!.!! ||||||! !..!! !!!. :!!!!: ! !! ||| !||| yrIleAlaLeuProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTy 208625 : acaTCGCTTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTA : 208681 142 : eLysLeuLeuIleAsnSerSerGlnLeuSerIleLeuAspGlnArgArgAsnHisAla : 160 !!:! !|||:!! !! !! !! !! !||||||||| ||| !!:!! !!.! rArgArgLeuValTyrProValProLysPheIleLeuAspValArgTyrSerProVal 208682 : CAGAAGGCTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTG : 208738 161 : PheGluIleValPheLeuLeuGlnPhePheGlyGlyPheIleIleCysThrLeuThrI : 180 !|||||| !!!:! !:!!|||!!.!!...!||||||:!! ! !!.!:!!|||: AsnGluIlePheTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrV 208739 : AATGAGATTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGG : 208798 181 : leAlaLeuTyrGlyLeuAsnAlaLeuLeuValMetHisThrCysAlaGlnMetThrIl : 199 !!!.! !! !|||||| !|||||||||!.!||||||.!!|||!.!|||:!! !|| alGlyAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIl 208799 : TTGGGGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGAT : 208855 200 : eLeuMetThrLeuIleLysMetLeuSerGlyGluGluAlaCysLysGlyArgAsnVal : 218 |||||||:!!! !!!::!!! !||| !! !! !..!! ! !:!!! !!:!|||:!! eLeuMetSerTrpMetGluLysLeuValAspGlyArgGluAspGluGluLysAsnLeu 208856 : TTTGATGTCCTGGATGGAGAAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTG : 208912 219 : AspGluArgLeuAlaIleValValGluHisGlnThrArg : 231 |||:!!|||||||||! !:!!||||||!!.!!...!||| AspGlnArgLeuAlaAsnIleValGluGlnHisValArg 208913 : GATCAGAGGTTGGCTAATATCGTGGAGCAGCATGTTCGA : 208953 vulgar: CbirOr12 46 231 . KQ414889.1 208395 208953 + 255 M 47 141 G 1 0 M 32 96 G 0 3 M 6 18 G 0 3 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208396 208953 255 + . gene_id 5 ; sequence CbirOr12 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208396 208953 . + . KQ414889.1 exonerate:protein2genome:local exon 208396 208953 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208396 208953 255 + . alignment_id 5 ; Query CbirOr12 ; Align 208396 47 141 ; Align 208537 95 96 ; Align 208636 127 18 ; Align 208657 133 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 251 Query range: 233 -> 371 Target range: 228073 -> 230515 234 : SerPheLeuSerLeuValGluLysThrLeuGlnHisGlySerLeuPheAspValLeuG : 253 |||||||||:!!|||:!!|||||||||:!!|||!!. !:!!!!! ! !!: !!|||| SerPheLeuAlaLeuIleGluLysThrMetGlnGlnIleAlaPheValGluPheLeuG 228074 : AGCTTTCTGGCCCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAG : 228131 254 : lyCysThrMetLeuIleCysLeuValGlyTyrCysIleLeuIle >>>> Target : 268 ||||||||!!::!!:!:||||||:!!! !|||! !|||:!!! 72 lyCysThrIleIleLeuCysLeuIleGluTyrTyrIleIleThr++ 228132 : GGTGTACAATAATTCTGTGCCTCATCGAGTATTACATCATAACGgt............ : 228178 269 : Intron 1 >>>> GluTrpGlnAspGlyAsnIleAlaAsnThrCysThrPheLeuP : 282 bp ||||||.!. !.!.:!!.!! !.!! |||!:!! ! ++GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerA 228179 : .............agGAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAG : 228290 283 : heAlaLeuIleSerAsnLeuValAsnIlePheValLeuCysTyrIleGlyGluHisIl : 301 !|||:!!||| ! |||||||||:::...||||||||||||||| !:! laLeuLeuLeuSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleVa 228291 : CGTTACTTTTATCCTTTAccttcaatattttcatattttgttaTATAGGAGAAATTGT : 228347 302 : eThrAlaVal >>>> Target Intron 2 >>>> AlaAspGlnValAlaTrpT : 311 !.!!! ! ! 1889 bp ..! :!!|||!.! ! lAlaGluHis++ ++CysArgLysValGlyGluL 228348 : TGCCGAACACgt.........................agTGCAGAAAAGTCGGCGAAA : 230266 312 : hrThrAsnMetLeuGluTrpTyrArgLeuProThrAsnLysThrArgAsnIleValLe : 330 !:!! !!|||:!!||||||||||||||| !! !||||||! !! ! ! !:!!|| ysSerTyrMetIleGluTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLe 230267 : AGTCGTACATGATCGAATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTT : 230323 331 : uIleIleIleThrSerHisIleProLeuLysIleThrAlaGlyLysLeuValValLeu : 349 ||||||| !! !|||:!! ! !! !|||.!!|||||||||!!.:!!|||! !||| uIleIleAlaMetSerAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeu 230324 : GATCATCGCCATGTCCAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTA : 230380 350 : SerPheArgThrPheGlyAsn >>>> Target Intron 3 >>>> ValValLy : 359 ||| ! !.!||||||.!!:!! 67 bp |||||||| SerValAsnThrPheSerAsp++ ++ValValLy 230381 : TCCGTAAACACTTTCAGCGACgt.........................agGTCGTTAA : 230477 360 : sSerAlaValAlaTyrLeuAsnIleLeuArgThrVal : 371 |!!!:!!:!!!.!!:!||||||!!:|||||||||:!! sThrSerMetGlyPheLeuAsnMetLeuArgThrLeu 230478 : AACGTCCATGGGTTTCTTAAACATGCTACGAACACTG : 230515 vulgar: CbirOr12 233 371 . KQ414889.1 228073 230515 + 251 M 34 102 5 0 2 I 0 68 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228074 230515 251 + . gene_id 6 ; sequence CbirOr12 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 228074 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228074 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230403 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230403 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 230404 230405 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 230404 230470 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230469 230470 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230471 230515 . + . KQ414889.1 exonerate:protein2genome:local exon 230471 230515 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228074 230515 251 + . alignment_id 6 ; Query CbirOr12 ; Align 228074 234 102 ; Align 228248 268 111 ; Align 230248 305 156 ; Align 230471 357 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 235 Query range: 234 -> 357 Target range: 304939 -> 305783 235 : PheLeuSerLeuValGluLysThrLeuGlnHisGlySerLeuPheAspValLeuGlyC : 254 |||! !:!!:!!|||:!!! !..!||||||.!.! !!!!!!!!!.!!: !!:!!|||! PheSerAlaIleValGlnThrValLeuGlnGluValCysPheLeuGluPheIleGlyS 304940 : TTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTTCTTGGAATTCATTGGTT : 304997 255 : ysThrMetLeuIleCysLeuValGlyTyrCysIleLeuIle >>>> Target Int : 268 !|||:!:||||||||||||:!!! !|||! ! !:!!! 62 bp erThrLeuLeuIleCysLeuLeuGluTyrTyrCysIleThr++ 304998 : CTACCTTACTGATATGTCTACTTGAATACTACTGTATAACGgt............... : 305041 269 : ron 1 >>>> GluTrpGlnAspGlyAsnIleAlaAsnThrCysThrPheLeuPheA : 283 !!:|||:!!..!.!!|||! !!.!!:! ! |||!:! ! ! ++AspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValL 305042 : ..........agGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGT : 305146 284 : laLeuIleSerAsnLeuValAsnIlePheValLeuCysTyrIleGlyGluHisIleTh : 302 !||||||||| ! !!|||||||||:!!|||||||||||||||||| !:!!! euLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMe 305147 : TACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTAT : 305203 303 : rAlaVal >>>> Target Intron 2 >>>> AlaAspGlnValAlaTrpThrT : 312 !! ! ! 413 bp ::!..!...|||!.!! :!! tGluLys++ ++SerSerSerValGlyLeuSerC 305204 : GGAAAAGgt.........................agAGCAGTAGCGTTGGATTATCCT : 305646 313 : hrAsnMetLeuGluTrpTyrArgLeuProThrAsnLysThrArgAsnIleValLeuIl : 331 ! !|||:!!...||||||!.!|||||||||!!.! !! !!.!..!:!!:!!||||| ysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleLeuIl 305647 : GTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTTTAAT : 305703 332 : eIleIleThrSerHisIleProLeuLysIleThrAlaGlyLysLeuValValLeuSer : 350 |||| !! !||| !! !||| !||||||!:!|||||||||:!!|||! !|||||| eIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysValValAspLeuSer 305704 : CATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTATCT : 305760 351 : PheArgThrPheGlyAsnVal : 357 !!. !||||||||||||||| LeuSerThrPheGlyAsnVal 305761 : TTATCCACATTTGGAAACGTG : 305783 vulgar: CbirOr12 234 357 . KQ414889.1 304939 305783 + 235 M 33 99 5 0 2 I 0 58 3 0 2 M 37 111 5 0 2 I 0 409 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304940 305783 235 + . gene_id 7 ; sequence CbirOr12 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 304940 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304940 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 0 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304940 305783 235 + . alignment_id 7 ; Query CbirOr12 ; Align 304940 235 99 ; Align 305101 268 111 ; Align 305625 305 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 201 Query range: 267 -> 369 Target range: 277371 -> 277833 268 : GluTrpGlnAspGlyAsnIleAlaAsnThrCysThrPheLeuPheAlaLeuIleSerA : 287 ||||||...|||.!!:!!:!! !!..! ! !||| !!!!.!. !|||||||||! GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 288 : snLeuValAsnIlePheValLeuCysTyrIleGlyGluHisIleThrAlaVal >>> : 305 |||||||||..!:!!||||||||||||||| :!!|||! ! ! etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 306 : > Target Intron 1 >>>> AlaAspGlnValAlaTrpThrThrAsnMetLeuG : 316 72 bp ..! ! :!!|||!.! !..!..! !!||| !. ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 317 : luTrpTyrArgLeuProThrAsnLysThrArgAsnIleValLeuIleIleIleThrSe : 335 !.|||||| !|||||| !!!. ! ! !! !|||:!::!!||||||||| !! !|| snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 336 : rHisIleProLeuLysIleThrAlaGlyLysLeuValValLeuSerPheArgThrPhe : 354 | !::: :::|||||||||||||||||||||::: :::||| ! !|||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 355 : GlyAsn >>>> Target Intron 2 >>>> ValValLysSerAlaValAlaTy : 364 |||:!! 84 bp |||:!!|||!!!.!! !!||||| GlyAsp++ ++ValIleLysThrThrPheAlaTy 277703 : GGCGATgt.........................agGTAATAAAAACCACTTTCgcgta : 277816 365 : rLeuAsnIleLeuArg : 369 |||||||||||||||| rLeuAsnIleLeuArg 277817 : tttaaatattctacgC : 277833 vulgar: CbirOr12 267 369 . KQ414889.1 277371 277833 + 201 M 37 111 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277833 201 + . gene_id 8 ; sequence CbirOr12 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277833 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277833 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277833 201 + . alignment_id 8 ; Query CbirOr12 ; Align 277372 268 111 ; Align 277555 305 156 ; Align 277795 357 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 196 Query range: 19 -> 233 Target range: 204338 -> 204977 20 : IleCysCysIleMetIleCysPheAsnIleValLeuTyrThrPheTyrCysIlePheA : 39 :!! ! ! ...::: ||| :!::!!:!! ! !.!!! ! !:!:||| ValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheL 204339 : GTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCC : 204396 40 : snThrGluAsnAspProArgAlaLysLeuLysLeuThrAlaProIleIleTyrCysMe : 58 ! !|||!!.:!! !!:! !:::||||||:!! !!.!||||||:!: !!|||! euLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSe 204397 : TGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAG : 204453 59 : tThrAlaPheAlaLysTyrValThrPheIleIleHisGluGlyAspIleLysThrCys : 77 ! ! !||| !|||||| !..!.!!:!! !!.. ! ! ! |||:!!! ! !! rIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSer 204454 : CATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGT : 204510 78 : LeuLysHisValThrAsnAspTrpLysPheLeuAlaAsnValProAsnAlaArgAspA : 97 |||!!. !:!!! !..!|||||| :!!! ! !..! !.!. !||| LeuAsnThrIleArgArgAspTrp------IleGluAlaThrAspGluAsnArgLeuI 204511 : TTGAACACCATCAGACGCGACTGG------ATAGAGGCTACGGATGAAAATCGGTTGA : 204564 98 : laMetIleValAsnAlaLysThrAlaArgLysLeuPheThrValCysCysThrIleLe : 116 !.!. ! !!!.||||||! !!.!|||!:!:!!!!. !:!!.....!.!!! !:! lePheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMe 204565 : TTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTAT : 204621 117 : uTyrPheThrSerLeuLeuTyrHis<->LeuThrProLeuIleGluGlyAsnIleAsp : 134 !||| ! !.!!|||! !|||... :!! !||||||:!:..!|||!..|||! tTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleVal 204622 : GTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTA : 204678 135 : IleAspGluAsnAlaThrIleLysLeuLeuIleAsnSerSerGlnLeuSerIleLeuA : 154 ! ! !!!:|||!.!||||||!:!! !||| ! !! ! ... ......: ThrProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePheA 204679 : ACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttcttta : 204738 155 : spGlnArgArgAsnHisAlaPheGluIleValPheLeuLeuGlnPhePheGlyGlyPh : 173 :::!!!:!|||:::! !!:!||||||||||||:!!||||||.!!.!.!.!||||| snGluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPh 204739 : acGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTT : 204795 174 : eIleIleCysThrLeuThrIleAlaLeuTyrGlyLeuAsnAlaLeuLeuValMetHis : 192 |:!!! !! !.!!:!!! !! !!.! !! !|||:!! !||||||!!!|||:!:||| eValThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHis 204796 : TGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCAC : 204852 193 : ThrCysAlaGlnMetThrIleLeuMetThrLeuIleLysMetLeuSerGlyGluGluA : 212 .!!|||::!..!:!!! !||||||:!!!.! !!!:!!. ||| !! !:!!! !! AlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAlaA 204853 : GCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCGG : 204912 213 : laCysLysGlyArgAsnValAspGluArgLeuAlaIleValValGluHisGlnThrAr : 231 ! ! ! !! ! !||| !!..!!:!:!!||| !:!!||||||:!!||||||!: spMetThrGluThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrLy 204913 : ACATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGAA : 204969 232 : gThrArg : 233 !! !!:! sIleLys 204970 : GATAAAG : 204977 vulgar: CbirOr12 19 233 . KQ414889.1 204338 204977 + 196 M 66 198 G 2 0 M 37 111 G 0 3 M 109 327 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204339 204977 196 + . gene_id 9 ; sequence CbirOr12 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204339 204977 . + . KQ414889.1 exonerate:protein2genome:local exon 204339 204977 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 204339 204977 196 + . alignment_id 9 ; Query CbirOr12 ; Align 204339 20 198 ; Align 204537 88 111 ; Align 204651 125 327 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 187 Query range: 5 -> 231 Target range: 262912 -> 263593 6 : LeuThrThrProGluMetIleCysLysThrLeuLeuIleValIleCysCysIleMetI : 25 :!!:!!! ! !||| ||| ! ! !||||||||||||:!!|||! ! !:!:| IleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCysLeuI 262913 : ATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTGTCTCA : 262970 26 : leCysPheAsnIleValLeuTyrThrPheTyrCysIlePheAsnThrGluAsnAspPr : 44 || ! !!.!:!!:!!! !! !! !.!!:!! !:!!.!..!..!!|||||| ! leLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsnPhe-- 262971 : TACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAATTTC-- : 263027 45 : oArgAlaLysLeuLysLeuThrAlaProIleIleTyrCysMetThrAlaPheAlaLys : 63 !.! !||||||:!!:!! !!.!|||:!! ! ! !! .!...!!.!.!. !!!. -HisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleAsn 263028 : -CATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCAAT : 263081 64 : TyrValThrPheIleIleHisGluGlyAspIleLysThrCysLeuLysHisValThrA : 83 |||..! !!!.:!::!!|||... !||||||:!! !|||:!!:!!|||||| !. TyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGlnG 263082 : TACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCAGG : 263141 84 : snAspTrpLysPheLeuAlaAsnValProAsnAlaArgAspAlaMetIleValAsnAl : 102 !.|||||| .!!:!!.!!!..:!! !:!! !||| !|||:!: !||||| luAspTrpCysIleValThrArgLeuGluAspGlnArg---IleMetLeuLysAsnAl 263142 : AAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGT---ATCATGCTGAAGAACGC : 263195 103 : aLysThrAlaArgLysLeuPheThrValCysCysThrIleLeuTyrPheThrSerLeu : 121 |||| !!.!||| ! :!! .!! !|||...! !.!!:!! ! !:!! !:!! aLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMet 263196 : GAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATG : 263252 122 : LeuTyrHisLeuThrProLeuIleGluGlyAsnIleAspIleAspGluAsnAlaThr< : 141 ! ! ! !|||..! !! !.!! !.!.:!: ! |||! |||! !||| CysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrA 263253 : TGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTA : 263312 142 : -><->IleLysLeuLeuIleAsnSerSerGlnLeuSerIleLeuAspGlnArgArgAs : 158 :!!::::!!||| ! !! ! ! !..!|||:!! !! !|| rgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThrAs 263313 : GAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAA : 263369 159 : nHisAlaPheGluIleValPheLeuLeuGlnPhePheGlyGlyPheIleIleCysThr : 177 |! .!! !|||||| !!.!! ! !||||||.!...!|||||||||:!! !.!! nProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAla 263370 : TCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCG : 263426 178 : LeuThrIleAlaLeuTyrGlyLeuAsnAlaLeuLeuValMetHisThrCysAlaGlnM : 197 !|||:!!!.! !!:!|||:!!!..|||:!!!!!!.! |||.!!|||!.!|||: ThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnL 263427 : ACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGT : 263486 198 : etThrIleLeuMetThrLeuIleLysMetLeuSerGlyGluGluAlaCysLysGlyAr : 216 !!!.!:!:||||||:!!! !|||! ! !!! !..!:!!... ! !:!!..!!: euAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLy 263487 : TGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAA : 263543 217 : gAsnVal<->AspGluArgLeuAlaIleValValGluHisGlnThrArg : 231 !|||:!! ! ..!:!!!.!:!::!!|||||||||!!. !||| sAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArg 263544 : GAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGA : 263593 vulgar: CbirOr12 5 231 . KQ414889.1 262912 263593 + 187 M 38 114 G 1 0 M 51 153 G 1 0 M 44 132 G 0 6 M 78 234 G 0 3 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262913 263593 187 + . gene_id 10 ; sequence CbirOr12 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262913 263593 . + . KQ414889.1 exonerate:protein2genome:local exon 262913 263593 . + . insertions 9 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 262913 263593 187 + . alignment_id 10 ; Query CbirOr12 ; Align 262913 6 114 ; Align 263027 45 153 ; Align 263180 97 132 ; Align 263318 141 234 ; Align 263555 219 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 187 Query range: 248 -> 367 Target range: 280034 -> 280465 249 : PheAspValLeuGlyCysThrMetLeuIleCysLeuValGlyTyrCysIleLeuIleG : 268 ||| !!:!!:!! !...! !!!: !.!! !:!! !..!! ! :!!!!! | PheHisIleValMetAlaLysIleAlaPheValMetTyrSerLeuSerValPhe***G 280035 : TTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGTTGTCAGTTTTCTAGG : 280092 269 : luTrpGlnAspGlyAsnIleAlaAsnThrCysThrPheLeuPheAlaLeuIleSerAs : 287 |||||:!!.!...!:!! ! !...|||! !|||!:!|||.!. !||||||||| luTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerLe 280093 : AATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTTT : 280149 288 : nLeuValAsnIlePheValLeuCysTyrIleGlyGluHisIleThrAlaVal >>>> : 305 ! !!|||:!!|||:!!|||||||||||||||||| !:!!:!!! ! uThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 280150 : AACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt.... : 280205 306 : Target Intron 1 >>>> AlaAspGlnValAlaTrpThrThrAsnMetLeuGl : 316 74 bp ..! :!!|||!.! !:!!||| !!|||:!!!! ++CysLeuLysValGlyValSerThrTyrMetIleAs 280206 : .....................agTGCTTAAAAGTCGGCGTGTCAACTTACATGATCGA : 280310 317 : uTrpTyrArgLeuProThrAsnLysThrArgAsnIleValLeuIleIleIleThrSer : 335 :||||||||||||||| !!!.|||.!!!:!..!:!::!!||||||.!! !..!||| pTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaValSer 280311 : CTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCGTGTCG : 280367 336 : HisIleProLeuLysIleThrAlaGlyLysLeuValValLeuSerPheArgThrPheG : 355 :!! ! !!:!!|||:!!||||||||||||:!!:!!! !||||||!!.!!!!:!||| AsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheC 280368 : AATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCT : 280427 356 : lyAsnValValLysSerAlaValAlaTyrLeuAsnIle : 367 !!!:!||| !! ! ! !:!!:!!|||! !:!!:!: ysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280428 : GCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: CbirOr12 248 367 . KQ414889.1 280034 280465 + 187 M 56 168 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280035 280465 187 + . gene_id 11 ; sequence CbirOr12 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280035 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280035 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280035 280465 187 + . alignment_id 11 ; Query CbirOr12 ; Align 280035 249 168 ; Align 280277 305 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 182 Query range: 267 -> 371 Target range: 301686 -> 302160 268 : GluTrpGlnAspGlyAsnIleAlaAsnThrCysThrPheLeuPheAlaLeuIleSerA : 287 |||||||||:!!.!!:!!! ! !! !! ||||||!!! ! !|||! ||| GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerP 301687 : GAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGT : 301744 288 : snLeuValAsnIlePheValLeuCysTyrIleGlyGluHisIleThrAlaVal >>> : 305 ! ! !!|||||||||:!!!!!||||||||||||||| !:!!:!!! ! ! heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301745 : TCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt... : 301800 306 : > Target Intron 1 >>>> AlaAspGlnValAlaTrpThrThrAsnMetLeuG : 316 80 bp ..!..!|||:!!!.!! .!!:!! !! !:!!! ++CysSerGlnIleGlySerAlaSerTyrGluIleA 301801 : ......................agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCG : 301911 317 : luTrpTyrArgLeuProThrAsnLysThrArgAsnIleValLeuIleIleIleThrSe : 335 !:||||||!.!||||||.!!!!.!:!.!! !:!!:!!:!!|||:!!! !:!:! !|| spTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSe 301912 : ATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATC : 301968 336 : rHisIleProLeuLysIleThrAlaGlyLysLeuValValLeuSerPheArgThrPhe : 354 |!!. !|||! !|||:!!||||||||||||:!!:!!! !||||||!!.!.!|||||| rGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPhe 301969 : GCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTC : 302025 355 : GlyAsn >>>> Target Intron 2 >>>> ValValLysSerAlaValAlaTy : 364 .!!::! 82 bp |||||||||!!!:!!|||!.!|| SerSer++ ++ValValLysThrSerValValTy 302026 : AGCTCTgt.........................agGTGGTGAAAACATCGGTGGTGTA : 302137 365 : rLeuAsnIleLeuArgThrVal : 371 |||||||:!!|||||||||||| rLeuAsnLeuLeuArgThrVal 302138 : CTTGAATTTACTGCGAACAGTT : 302160 vulgar: CbirOr12 267 371 . KQ414889.1 301686 302160 + 182 M 37 111 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301687 302160 182 + . gene_id 12 ; sequence CbirOr12 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302160 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302160 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301687 302160 182 + . alignment_id 12 ; Query CbirOr12 ; Align 301687 268 111 ; Align 301878 305 156 ; Align 302116 357 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 181 Query range: 267 -> 372 Target range: 206050 -> 207607 268 : GluTrpGlnAspGlyAsnIleAlaAsnThrCysThrPheLeuPheAlaLeuIleSerA : 287 ||||||:!!:!!..!|||! !.!! ..! ..!!:!:!! !! !|||||| GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 288 : snLeuValAsnIlePheValLeuCysTyrIleGlyGluHisIleThrAlaVal >>> : 305 ! ! !! !:!!|||:!!|||||||||||||||:!!! !:!!! !! ! ! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 306 : > Target Intron 1 >>>> AlaAspGlnValAlaTrpThrThrAsnMetLeuG : 316 81 bp ! !! |||!.!! !|||:!! !! !:!!. ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 317 : luTrpTyrArgLeuProThrAsnLysThrArgAsnIleValLeuIleIleIleThrSe : 335 !.|||||||||||||||!.!!.. ! .!!|||::!!!::!!||||||||| !! !|| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 336 : rHisIleProLeuLysIleThrAlaGlyLysLeuValValLeuSerPheArgThrPhe : 354 |:!! !|||:!!|||:!!||||||||||||:!! !!! !:!!|||!!. !!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 355 : GlyAsn >>>> Target Intron 2 >>>> ValValLysSerAlaValAlaTy : 364 !:!! 1161 bp |||:!!||| !|||:!!!.!|| ThrAsp++ ++ValMetLysValAlaMetGlyTy 206391 : ACCGATgt.........................agGTAATGAAGGTGGCGATGGGATA : 207581 365 : rLeuAsnIleLeuArgThrValVal : 372 |!!!|||||||||||| !|||||| rPheAsnIleLeuArgGluValVal 207582 : CTTCAACATACTCCGTGAAGTCGTA : 207607 vulgar: CbirOr12 267 372 . KQ414889.1 206050 207607 + 181 M 37 111 5 0 2 I 0 77 3 0 2 M 52 156 5 0 2 I 0 1157 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 207607 181 + . gene_id 13 ; sequence CbirOr12 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206398 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206398 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206399 206400 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206399 207559 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 207558 207559 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 207560 207607 . + . KQ414889.1 exonerate:protein2genome:local exon 207560 207607 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 207607 181 + . alignment_id 13 ; Query CbirOr12 ; Align 206051 268 111 ; Align 206243 305 156 ; Align 207560 357 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 181 Query range: 267 -> 369 Target range: 272836 -> 273293 268 : GluTrpGlnAspGlyAsnIleAlaAsnThrCysThrPheLeuPheAlaLeuIleSerA : 287 |||||| ||| !:!!.!! !!:! ! !|||!:!!!!.!. !|||||||||! GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 288 : snLeuValAsnIlePheValLeuCysTyrIleGlyGluHisIleThrAlaVal >>> : 305 |||||||||:::::!||||||||||||||| :!!|||! ! ! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 306 : > Target Intron 1 >>>> AlaAspGlnValAlaTrpThrThrAsnMetLeuG : 316 70 bp ... ::::::... !..!..! !!||| !. ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 317 : luTrpTyrArgLeuProThrAsnLysThrArgAsnIleValLeuIleIleIleThrSe : 335 !.|||||| !|||||| !!!. ! ! !! !:!!:!::!!||||||||| !! !!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 336 : rHisIleProLeuLysIleThrAlaGlyLysLeuValValLeuSerPheArgThrPhe : 354 ! !:!! !:!!|||||||||||||||!:!:!!||| !:!!||| ! !|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 355 : GlyAsn >>>> Target Intron 2 >>>> ValValLysSerAlaValAlaTy : 364 |||:!! 81 bp |||:!!||||||||| !!||||| GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 365 : rLeuAsnIleLeuArg : 369 |||||||!!:|||||| rLeuAsnMetLeuArg 273277 : CTTAAATATGCTACGA : 273293 vulgar: CbirOr12 267 369 . KQ414889.1 272836 273293 + 181 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273293 181 + . gene_id 14 ; sequence CbirOr12 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273293 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273293 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273293 181 + . alignment_id 14 ; Query CbirOr12 ; Align 272837 268 111 ; Align 273018 305 156 ; Align 273255 357 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 304 -> 373 Target range: 292392 -> 293251 305 : AlaAspGlnValAlaTrpThrThrAsnMetLeuGluTrpTyrArgLeuProThrAsnL : 324 !.!..!:!!:!!||| .!!:!! !! !|||||||||!.!||||||! !...| GlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgArgL 292393 : GGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGA : 292450 325 : ysThrArgAsnIleValLeuIleIleIleThrSerHisIleProLeuLysIleThrAl : 343 ||.!!|||:!!|||||||||:!::!! !! !!!! ! !|||:!!|||:!!||||| ysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuThrAl 292451 : AGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGC : 292507 344 : aGlyLysLeuValValLeuSerPheArgThrPheGlyAsn >>>> Target Intr : 357 |||||||:!! !!|||||||||!!.!.!||||||||| ! 652 bp aGlyLysIlePheValLeuSerLeuAsnThrPheGlyAla++ 292508 : AGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTgt................ : 292551 358 : on 1 >>>> ValValLysSerAlaValAlaTyrLeuAsnIleLeuArgThrValVa : 372 |||:!!||||||:!!|||!.!|||:!!|||!!:||||||||||||.. ++ValLeuLysSerSerValValTyrMetAsnMetLeuArgThrValTh 292552 : .........agGTGCTGAAATCGTCGGTAGTTTACATGAACATGCTACGAACCGTCAC : 293246 373 : lGlu : 373 !||| rGlu 293247 : TGAA : 293251 vulgar: CbirOr12 304 373 . KQ414889.1 292392 293251 + 167 M 52 156 5 0 2 I 0 648 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292393 293251 167 + . gene_id 15 ; sequence CbirOr12 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 292393 292548 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292548 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 292549 292550 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 292549 293200 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 293199 293200 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 293201 293251 . + . KQ414889.1 exonerate:protein2genome:local exon 293201 293251 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292393 293251 167 + . alignment_id 15 ; Query CbirOr12 ; Align 292393 305 156 ; Align 293201 357 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 233 -> 309 Target range: 260779 -> 261859 234 : SerPheLeuSerLeuValGluLysThrLeuGlnHisGlySerLeuPheAspValLeuG : 253 ||||||:!!|||! !:!!||| ! ..!:!!.!.!.. !!!!!!!.!.!!::!!!!! SerPheIleSerArgIleGluAspValMetAsnArgIleCysPheLeuGluLeuPheA 260780 : AGCTTCATATCGCGTATCGAGGATGTGATGAACCGGATATGCTTCCTGGAGTTGTTCA : 260837 254 : lyCysThrMetLeuIleCysLeuValGlyTyrCysIleLeuIle >>>> Target : 268 !!||||||:!! !|||||||||:!!||||||! !||||||!!: 85 rgCysThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeuMet++ 260838 : GGTGCACTCTGGATATATGTCTACTTGGCTACTATATTCTTATGgt............ : 260884 269 : Intron 1 >>>> GluTrpGlnAspGlyAsnIleAlaAsnThrCysThrPheLeuP : 282 2 bp |||||| !!: !:!!||| !||| !! !|||!:!!!!. ++GluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheM 260885 : .............agGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCA : 261776 283 : heAlaLeuIleSerAsnLeuValAsnIlePheValLeuCysTyrIleGlyGluHisIl : 301 !. !||||||:!!! !! ! !!|||:!!|||:!!:!!||||||||||||||| :! etMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLe 261777 : TGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACT : 261833 302 : eThrAlaValAlaAspGlnValAla : 309 !|||! ! !!.!.!.!!.:!!||| uThrGluGlnValGlnHisLeuAla 261834 : AACGGAACAGGTACAACATTTGGca : 261859 vulgar: CbirOr12 233 309 . KQ414889.1 260779 261859 + 159 M 34 102 5 0 2 I 0 848 3 0 2 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 260780 261859 159 + . gene_id 16 ; sequence CbirOr12 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 260780 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260780 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261859 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261859 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 260780 261859 159 + . alignment_id 16 ; Query CbirOr12 ; Align 260780 234 102 ; Align 261734 268 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 267 -> 363 Target range: 238411 -> 238805 268 : GluTrpGlnAspGlyAsnIleAlaAsnThrCysThrPheLeuPheAlaLeuIleSerA : 287 |||||| !!!:.!!:!! ! !! ! ! !|||!:!!!! ! ||||||:!!:!!! GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheValAlaLeuValAlaI 238412 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTGTAGCACTCGTTGCTA : 238469 288 : snLeuValAsnIlePheValLeuCysTyrIleGlyGluHisIleThrAlaVal >>> : 305 !:!! !|||! !|||:!!||||||||||||.!!|||...:!:|||! ! ! leValSerAsnThrPheIleLeuCysTyrIleSerGluArgLeuThrGluGln++ 238470 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGAAAGGCTGACAGAACAGgt... : 238525 306 : > Target Intron 1 >>>> AlaAspGlnValAlaTrpThrThrAsnMetLeuG : 316 106 bp ..! :!!|||!.! ..!..! !!||| !! ++CysLeuLysValGlyGluValValTyrMetThrA 238526 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 238662 317 : luTrpTyrArgLeuProThrAsnLysThrArgAsnIleValLeuIleIleIleThrSe : 335 !:|||||| !|||||| !!..!:!! !! !:!!:!!:!!|||||||||! ! !|| spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSe 238663 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATC : 238719 336 : rHisIleProLeuLysIleThrAlaGlyLysLeuValValLeuSerPheArgThrPhe : 354 |:!!:!: !:!!|||:!!||||||||||||:!!:!! !:!!|||.!! !|||||| rAsnValValValLysValThrAlaGlyLysValLeuHisMetSerLeuTyrThrPhe 238720 : GAACGTGGTCGTTAAAGTCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTC : 238776 355 : GlyAsnValValLysSerAlaValAla : 363 |||:!!||| !:!!!!! !:!!||| GlyAspValSerGluThrAsnLeuAla 238777 : GGCGATGTAAGTGAAACTAATCTTGCT : 238805 vulgar: CbirOr12 267 363 . KQ414889.1 238411 238805 + 150 M 37 111 5 0 2 I 0 102 3 0 2 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238412 238805 150 + . gene_id 17 ; sequence CbirOr12 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 238412 238522 . + . KQ414889.1 exonerate:protein2genome:local exon 238412 238522 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238523 238524 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238523 238628 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 238627 238628 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238629 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238629 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238412 238805 150 + . alignment_id 17 ; Query CbirOr12 ; Align 238412 268 111 ; Align 238629 305 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 306 -> 368 Target range: 254280 -> 254555 307 : GlnValAlaTrpThrThrAsnMetLeuGluTrpTyrArgLeuProThrAsnLysThrA : 326 :!!|||!.! ..!..! !!||| !!!:|||||| !|||||| !!..!:!! !! LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 254281 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 254338 327 : rgAsnIleValLeuIleIleIleThrSerHisIleProLeuLysIleThrAlaGlyLy : 345 !:!!:!!:!!|||||||||! ! !|||:!!:!: !:!!:!!|||||||||||||| euAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLy 254339 : TCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaa : 254395 346 : sLeuValValLeuSerPheArgThrPheGlyAsn >>>> Target Intron 1 > : 357 |::: :::|||.!! !|||||||||:!! 89 bp sIlePheHisMetSerLeuTyrThrPheGlyAsp++ 254396 : aatattccatatgTCGCTTTACACGTTCGGCGATgt...................... : 254433 358 : >>> ValValLysSerAlaValAlaTyrLeuAsnIleLeu : 368 |||||||||!!!!.! !!||||||||||||!!:||| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeu 254434 : ...agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTT : 254555 vulgar: CbirOr12 306 368 . KQ414889.1 254280 254555 + 134 M 50 150 5 0 2 I 0 85 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254281 254555 134 + . gene_id 18 ; sequence CbirOr12 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254281 254430 . + . KQ414889.1 exonerate:protein2genome:local exon 254281 254430 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254431 254432 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254431 254519 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254518 254519 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254520 254555 . + . KQ414889.1 exonerate:protein2genome:local exon 254520 254555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254281 254555 134 + . alignment_id 18 ; Query CbirOr12 ; Align 254281 307 150 ; Align 254520 357 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 265 -> 357 Target range: 234797 -> 235147 266 : LeuIleGluTrpGlnAspGlyAsnIleAlaAsnThrCysThrPheLeuPheAlaLeuI : 285 :!!:!! ! |||!!: ::: ... ..!:!!!:!:!!.!!!.!! !: IleLeuThrSerGlnGluLysSerLysGluLysLeuAlaSerTyrValIleValTyrV 234798 : ATTTTAACTTCTCAGGAAAAgtcgaaggaaaaattagCTTCATACGTCATCGTGTACG : 234855 286 : leSerAsnLeuValAsnIlePheValLeuCysTyrIleGlyGluHisIleThrAlaVa : 304 !:|||! ! ! |||||||||:::...||||||||||||||| :!!|||! ! alSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGl 234856 : TGTCCATGACATTtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGCA : 234912 305 : lAlaAspGln{V} >>>> Target Intron 1 >>>> {al}AlaTrpThrThr : 312 !!.!! ..!{ } 74 bp {!!}!.! ! !..! nValGlySer{P}+- ++{he}GlyGluLysVal 234913 : GGTAGGATCA{T}ga.........................ag{TC}GGAGAAAAAGTG : 235010 313 : AsnMetLeuGluTrpTyrArgLeuProThrAsnLysThrArgAsnIleValLeuIleI : 332 !!||| !|||||||||||||||||| !!!.! .!!! !..!:!:|||:!!|||| TyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIleI 235011 : TACATGACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCA : 235070 333 : leIleThrSerHisIleProLeuLysIleThrAlaGlyLysLeuValValLeuSerPh : 351 || !! !||| !!!: !:!!||||||||||||||||||!!!:!! !:!!||| ! leSerArgSerSerMetValIleLysIleThrAlaGlyLysPheLeuGlnMetSerVa 235071 : TCTCCAGGTCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGT : 235127 352 : eArgThrPheGlyAsnVal : 357 ! !|||||||||:!!||| lAlaThrPheGlyAspVal 235128 : CGCAACATTTGGCGATGTG : 235147 vulgar: CbirOr12 265 357 . KQ414889.1 234797 235147 + 128 M 42 126 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234798 235147 128 + . gene_id 19 ; sequence CbirOr12 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234798 234924 . + . KQ414889.1 exonerate:protein2genome:local exon 234798 234924 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234925 234926 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 234925 234998 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234997 234998 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234999 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234999 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234798 235147 128 + . alignment_id 19 ; Query CbirOr12 ; Align 234798 266 126 ; Align 235001 309 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 306 -> 369 Target range: 264732 -> 265001 307 : GlnValAlaTrpThrThrAsnMetLeuGluTrpTyrArgLeuProThrAsnLysThrA : 326 :!!|||!.! !..!..! !!|||! !.!.|||||| !|||||| !!!. ! ! !! LysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrLysAspIleL 264733 : AAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACAAAGATATCC : 264790 327 : rgAsnIleValLeuIleIleIleThrSerHisIleProLeuLysIleThrAlaGlyLy : 345 !:!!:!::!!|||||||||:!!! !||| !:!: !!!!|||.!!||||||||||| euAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheThrAlaGlyLy 264791 : TTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCACCGCTGGAAA : 264847 346 : sLeuValValLeuSerPheArgThrPheGlyAsn >>>> Target Intron 1 > : 357 |:!!:!! !:!!|||.!. !||||||.!!:!! 80 bp sIleLeuHisMetSerMetTyrThrPheSerAsp++ 264848 : GATACTTCACATGTCCATGTACACATTCAGTGACgt...................... : 264885 358 : >>> ValValLysSerAlaValAlaTyrLeuAsnIleLeuArg : 369 |||:!!||||||:!! !!.!!|||||||||:!!|||||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArg 264886 : ...aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGC : 265001 vulgar: CbirOr12 306 369 . KQ414889.1 264732 265001 + 119 M 50 150 5 0 2 I 0 76 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264733 265001 119 + . gene_id 20 ; sequence CbirOr12 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264733 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264733 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265001 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265001 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264733 265001 119 + . alignment_id 20 ; Query CbirOr12 ; Align 264733 307 150 ; Align 264963 357 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 306 -> 367 Target range: 287069 -> 287252 307 : GlnValAlaTrpThrThrAsnMetLeuGluTrpTyrArgLeuProThrAsnLysThrA : 326 :!!|||!.!! !:!!||| !!|||:!!!!:||||||||||||||| !!!.! !.!!! LysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaG 287070 : AAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTC : 287127 327 : rgAsnIleValLeuIleIleIleThrSerHisIleProLeuLysIleThrAlaGlyLy : 345 :!..!:!::!!||||||.!! !..!|||:!! ! !!:!!|||:!!||||||||||| lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 287128 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 287184 346 : sLeuValValLeuSerPheArgThrPheGlyAsnValValLysSerAlaValAlaTyr : 364 |:!!:!!! !||||||!!.!!!!:!||| !!!:!||| !! ! ! !:!!:!!||| sIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 287185 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 287241 365 : LeuAsnIle : 367 ! !:!!:!: TyrHisLeu 287242 : TATCATTTG : 287252 vulgar: CbirOr12 306 367 . KQ414889.1 287069 287252 + 111 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287070 287252 111 + . gene_id 21 ; sequence CbirOr12 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287070 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287070 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287070 287252 111 + . alignment_id 21 ; Query CbirOr12 ; Align 287070 307 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 304 -> 357 Target range: 224499 -> 224658 305 : AlaAspGlnValAlaTrpThrThrAsnMetLeuGluTrpTyrArgLeuProThrAsnL : 324 ...:::::::::... ..!:!! !!|||:!!!!:|||||||||||| !! !|||| CysGluLysIleGlyGlnValSerTyrMetIleAspTrpTyrArgLeuThrGlyAsnL 224500 : tgtgaaaaaattggacaAGTGTCGTACATGATCGACTGGTATCGGTTGACTGGAAATA : 224557 325 : ysThrArgAsnIleValLeuIleIleIleThrSerHisIleProLeuLysIleThrAl : 343 ||! !! ! ! !:!!||||||||| ! !|||:!! ! !!:!!|||:!:||||| ysLysLeuCysCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAl 224558 : AGAAACTATGCTGCATTCTGATAATCGCGATGTCCAATTCTTCGATAAAATTGACAGC : 224614 344 : aGlyLysLeuValValLeuSerPheArgThrPheGlyAsnVal : 357 ||||!!.:!!|||! !|||!!!.!.! !|||||||||:!!||| aGlyAsnMetValGluLeuCysLeuThrThrPheGlyAspVal 224615 : GGGAAACATGGTCGAACTGTGTCTAACCACTTTCGGTGACGTA : 224658 vulgar: CbirOr12 304 357 . KQ414889.1 224499 224658 + 107 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224500 224658 107 + . gene_id 22 ; sequence CbirOr12 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224500 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224500 224658 107 + . alignment_id 22 ; Query CbirOr12 ; Align 224500 305 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 306 -> 357 Target range: 244664 -> 244817 307 : GlnValAlaTrpThrThrAsnMetLeuGluTrpTyrArgLeuProThrAsnLysThrA : 326 :!!|||!.! ..!..! !!||| !!!:|||||| !|||||| !!..!:!! !! LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 244665 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 244722 327 : rgAsnIleValLeuIleIleIleThrSerHisIleProLeuLysIleThrAlaGlyLy : 345 !:!!:!!:!!|||||||||! ! !|||:!!!!: !:!!:!!|||||||||||||| euAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleThrAlaGlyLy 244723 : TCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCACCGCTGGAAA : 244779 346 : sLeuValValLeuSerPheArgThrPheGlyAsnVal : 357 |:!!:!! !:!!|||.!! !|||||||||:!!||| sValLeuHisMetSerLeuTyrThrPheGlyAspVal 244780 : AGTATTACATATGTCGCTTTACACGTTCGGCGATGTA : 244817 vulgar: CbirOr12 306 357 . KQ414889.1 244664 244817 + 100 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244665 244817 100 + . gene_id 23 ; sequence CbirOr12 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244665 244817 . + . KQ414889.1 exonerate:protein2genome:local exon 244665 244817 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244665 244817 100 + . alignment_id 23 ; Query CbirOr12 ; Align 244665 307 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 304 Query range: 11 -> 269 Target range: 221360 -> 222143 12 : TyrValGlnAspLeuLysTyrAlaArgMetPheValProAsnIleLeuAsnAlaLeuG : 31 ||| ! !:!!:!!|||! ::! !...!!. !! ! ||||||!!. !!:!!| TyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleG 221361 : TACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCG : 221418 32 : lyIleTrpProSerLeuGlyLysArgLysSerIleCysLysArgLeuValAspTyrLe : 50 ||:!!||||||!:!! !!.!!!.! !...!!!:!! :!!|||! !:!! !!!::|| lyValTrpProAsnSerAlaAsnIleSerThrVal---GluArgTyrLeuTyrTrpLe 221419 : GTGTTTGGCCAAATTCAGCCAACATTTCCACGGTA---GAGAGATACCTCTACTGGCT : 221472 51 : uLeuIlePheLeuSerTyrSerLeuIlePheAlaSerLeuIleProSerSerLeuPhe : 69 |:!!! ! !!:!!!!!|||||||||||| ! !|||:!!|||!!!||||||!:! uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 70 : TrpValPheLys<->GlyThrIleArgThrArgValArgMetPheLeuProLeuAlaT : 88 !:!!.!!:!! ! ! !:!! !!.!|||:!!!:!:!!!!. !||||||::!! ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 89 : yrThrIleAlaAlaValSerLysTyrGlyIleLeuIleLeuGlyGlnAspArgIleAr : 107 :! !:!: !||| !! !|||||| !:!:||||||||| !:!!:!! !||||| heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 108 : gHisCysValLysTyrIleGluGluAspTrpLysAsnValAlaAsnValAspAlaArg : 126 |.!.|||:!!:!! !|||||| !||||||||||||:!!.!! !! ! ! ! !!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 127 : AsnMetMetArgGluSerAlaArgValGlyArgArgLeuValAlaIleSerIleSerP : 146 :!!!!:|||! !|||!:!|||! ! !!||||||||||||:!! !|||!!!! !! !| AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 147 : heTyrCysSerSerIleMetSerValArgLeuIleProLeuLeuTyrLeuGlyLysIl : 165 || ! !|||......::: ::! ! !! !!!! !:!!|||||||| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 166 : eValAspGln<->TyrAsnValThrIleArgLeuLeuProThrProAlaTyrLeuPhe : 183 | !! ||| |||||||||... ! !:!! ! !||| !! !||| eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 184 : SerLeuAspValGlnAlaThrProValTyrGluIleMetTyrSerLeuGlnGlyAlaT : 203 ! !:!!|||..!!:! !!:!|||||| !!||||||:!!!:!||||||||| ! ! IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 204 : yrGlyIleValThrAlaSerIleSerThrGlyGlyIleGlyLeuIleThrIlePheVa : 222 ||| !:!!! ! !||||||!!!:!!!.!!.! !.!!|||:!!.!!!!:|||!. laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 223 : lMetHisAlaCysGlyGlnLeuLysIleLeuMetAsnLeuMetSerGluPheSerGlu : 241 !:!!|||||||||||||||:!!:!!:!:||||||!:!! !:!!!.!.!.!!.! !.!. aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 242 : AspLeuGlnGln<-><->LysGluValAspLysLysLeuAlaAsnIleValGluHisG : 259 ! !! ! !.!. !!..!.||||||!:!!:!:!!|||!!.||||||.!.!!.! GlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnH 222052 : GGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAAC : 222111 260 : lnIleArgIleArgAsnPheLeuGlnLeuVal : 269 !.:!!|||||| !.!.!:!:!!!::! !:!! isValArgIleLeuGlnTyrValArgCysIle 222112 : ACGTTCGAATATTGCAGTATGTACGTTGTATC : 222143 vulgar: CbirOr7 11 269 . KQ414889.1 221360 222143 + 304 M 31 93 G 1 0 M 30 90 G 0 3 M 95 285 G 0 3 M 77 231 G 0 6 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221361 222143 304 + . gene_id 1 ; sequence CbirOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221361 222143 . + . KQ414889.1 exonerate:protein2genome:local exon 221361 222143 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221361 222143 304 + . alignment_id 1 ; Query CbirOr7 ; Align 221361 12 93 ; Align 221454 44 90 ; Align 221547 74 285 ; Align 221835 169 231 ; Align 222072 246 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 300 Query range: 13 -> 263 Target range: 204224 -> 204977 14 : GlnAspLeuLysTyrAlaArgMetPheValProAsnIleLeuAsnAlaLeuGlyIleT : 33 :!!||||||!:!||||||! ! |||||| ! ||||||... !:!!||| | GluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaT 204225 : GAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGT : 204282 34 : rpProSerLeuGlyLysArgLysSerIleCysLysArgLeuValAspTyrLeuLeuIl : 52 ||||| :!! ! !!.!...||| ! !! !||||||||| :!! ! rpPro---IleProValAsnSerSerProPheThrArgLeuValArgArgIleGluHi 204283 : GGCCG---ATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACA : 204336 53 : ePheLeuSerTyrSerLeuIlePheAlaSerLeuIleProSerSerLeuPheTrpVal : 71 ! ! :!!!!!||| |||...||| !:!!:!!|||.!! !|||!:! ! !! sValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPhe 204337 : CGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTC : 204393 72 : PheLys<->GlyThrIleArgThrArgValArgMetPheLeuProLeuAlaTyrThrI : 90 .!.||| !!.! !!:!! !|||:!!!:!!!:.!! !|||:!!!.! !! !! LeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysS 204394 : CTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCA : 204453 91 : leAlaAlaValSerLysTyrGlyIleLeuIleLeuGlyGlnAspArgIleArgHisCy : 109 ! ! ! !!! !||||||..!:!!:!!:!!! ! !! |||!:!|||!:! ! ! erIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSe 204454 : GCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAG : 204510 110 : sValLysTyrIleGluGluAspTrpLysAsnValAlaAsnValAspAlaArgAsnMet : 128 !:!!!!. !|||..!...||||||! !.!. |||!..! !!!: !||| !!: rLeuAsnThrIleArgArgAspTrpIleGlu---AlaThrAspGluAsnArgLeuIle 204511 : TTTGAACACCATCAGACGCGACTGGATAGAG---GCTACGGATGAAAATCGGTTGATT : 204564 129 : MetArgGluSerAlaArgValGlyArgArgLeuValAlaIleSerIleSerPheTyrC : 148 .!.|||..!!.!|||!:!:!!|||||||||:!!:!! !|||:!! !:!! ! ! PheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetT 204565 : TTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGT : 204624 149 : ysSerSerIleMetSerValArgLeuIleProLeuLeuTyrLeuGlyLysIleValAs : 167 !.!!.!! !:!!!!! !||| !|||! !! !|||! !|||! !|||||| yrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleValTh 204625 : ACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTAAC : 204681 168 : pGlnTyrAsnValThrIleArgLeuLeuProThrProAlaTyrLeuPheSerLeuAsp : 186 ! !!|||||||||||||||! !|||||| !|||!.!|||... ...::: rProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePheAsn 204682 : ACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaac : 204738 187 : ValGlnAlaThrProValTyrGluIleMetTyrSerLeuGlnGlyAlaTyrGlyIleV : 206 ! !||| !:!!||| !|||||||||:!:!:!! !|||||| ! ! !|||.!!| GluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheV 204739 : GAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTG : 204798 207 : alThrAlaSerIleSerThrGlyGlyIleGlyLeuIleThrIlePheValMetHisAl : 225 ||||| !:!!:!!! !!:!||| ! !|||:!! !.!!:!:||||||:!:||||| alThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAl 204799 : TTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGC : 204855 226 : aCysGlyGlnLeuLysIleLeuMetAsnLeuMetSerGluPheSerGlu<-><->Asp : 242 ||||.!!..!|||!:!||||||:!!||| !|||!:!! !.!! !!!: ||| aCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAlaAsp 204856 : GTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCGGAC : 204912 243 : LeuGlnGlnLysGluValAspLysLysLeuAlaAsnIleValGluHisGlnIleArgI : 262 :!! :!!! ! ||| !!!:!|||:!!|||:!!|||||||||:!!|||! !:!| MetThrGluThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrLysI 204913 : ATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGAAGA : 204972 263 : leArg : 263 ||!:! leLys 204973 : TAAAG : 204977 vulgar: CbirOr7 13 263 . KQ414889.1 204224 204977 + 300 M 21 63 G 1 0 M 38 114 G 0 3 M 46 138 G 1 0 M 121 363 G 0 6 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204225 204977 300 + . gene_id 2 ; sequence CbirOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204225 204977 . + . KQ414889.1 exonerate:protein2genome:local exon 204225 204977 . + . insertions 9 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 204225 204977 300 + . alignment_id 2 ; Query CbirOr7 ; Align 204225 14 63 ; Align 204288 36 114 ; Align 204405 74 138 ; Align 204543 121 363 ; Align 204912 242 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 297 Query range: 7 -> 262 Target range: 208182 -> 208956 8 : LeuAsnValTyrTyrValGlnAspLeuLysTyrAlaArgMetPheValProAsnIleL : 27 |||||| ! !!||| !.!.||||||!..!:! ! ! .!. ! ! ! | LeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrL 208183 : CTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGT : 208240 28 : euAsnAlaLeuGlyIleTrpProSerLeuGlyLysArgLysSerIleCysLysArgLe : 46 ||!!. !:!!||| !||||||!!!! ! ! ! ||| ||| ! :!!!.! euLysIleIleGlySerTrpProArgSerIleAspArg---SerTrpLeuGluAsnSe 208241 : TGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGT---TCCTGGTTAGAGAACAG : 208294 47 : uValAspTyrLeuLeuIlePheLeuSerTyrSerLeuIlePheAlaSerLeuIlePro : 65 ! ! !! !||||||! ! ! ||||||:!!!!!|||:!! ! !! !:!!|||||| rGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIlePro 208295 : CCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCG : 208351 66 : SerSerLeuPheTrpValPhe<->LysGlyThrIleArgThrArgValArgMetPheL : 84 !!!.!!:!!||| !:!!.!! ! ! !.!! ! !!:!:!!!:!!!:! ! ThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysS 208352 : ACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTA : 208411 85 : euProLeuAlaTyrThrIleAlaAlaValSerLysTyrGlyIleLeuIleLeuGlyGl : 103 ! !!|||::!!:! !!!: !||| !!!!!||||||! !|||:!!! !:!! !!:! erAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGl 208412 : GCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGA : 208468 104 : nAspArgIleArgHisCysValLysTyrIleGluGluAspTrpLysAsnValAlaAsn : 122 !! ! !|||||| ! ||||||:!!|||:!!|||! ||||||!:!||||||! !:!! uGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHis 208469 : GGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCAC : 208525 123 : ValAspAlaArgAsnMetMetArgGluSerAlaArgValGlyArgArgLeuValAlaI : 142 ! !!!:! !|||!!.!!:||| !!!:!:!|||!!! !!!.!|||!:!|||:!!!.!| GluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValI 208526 : GAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGA : 208585 143 : leSerIleSerPheTyrCysSerSerIleMetSerValArgLeuIleProLeuLeuTy : 161 ||!!! !:!!||| ! !.!!.!.:::::: :!! ! !! !||| leCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuTh 208586 : TATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCAC : 208642 162 : rLeuGlyLysIleValAspGln<->TyrAsnValThrIleArgLeuLeuProThrPro : 179 !! !! !|||:!!|||!!::!! !|||:!!||| !||| !||| ! !||| rArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrPro 208643 : TCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCT : 208699 180 : AlaTyrLeuPheSerLeuAspValGlnAlaThrProValTyrGluIleMetTyrSerL : 199 !.! ! !|||! !|||||||||!:! !!:!|||||| !!||||||.!.|||!!!: ValProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrV 208700 : GTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGG : 208759 200 : euGlnGlyAlaTyrGlyIleValThrAlaSerIleSerThrGlyGlyIleGlyLeuIl : 218 !!||| ! !! |||.!!|||.!! !!:!|||!!!..!|||!.! !|||||| alGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAl 208760 : TACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGC : 208816 219 : eThrIlePheValMetHisAlaCysGlyGlnLeuLysIleLeuMetAsnLeuMetSer : 237 !.!!:!:.!!!.!|||||||||||||||||||||:!!|||||||||::!! !|||..! aAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGlu 208817 : CGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAG : 208873 238 : GluPhe<-><->SerGluAspLeuGlnGlnLysGluValAspLysLysLeuAlaAsnI : 255 :!!!!. .!!..!!!: !:!!:!!|||.!.:!!|||:!!!:!|||||||||| LysLeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnI 208874 : AAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATA : 208933 256 : leValGluHisGlnIleArgIle : 262 ||||||||!!.!!.:!!|||:!: leValGluGlnHisValArgVal 208934 : TCGTGGAGCAGCATGTTCGAGTG : 208956 vulgar: CbirOr7 7 262 . KQ414889.1 208182 208956 + 297 M 32 96 G 1 0 M 32 96 G 0 3 M 96 288 G 0 3 M 71 213 G 0 6 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208183 208956 297 + . gene_id 3 ; sequence CbirOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208183 208956 . + . KQ414889.1 exonerate:protein2genome:local exon 208183 208956 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208183 208956 297 + . alignment_id 3 ; Query CbirOr7 ; Align 208183 8 96 ; Align 208279 41 96 ; Align 208378 73 288 ; Align 208669 169 213 ; Align 208888 240 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 267 Query range: 25 -> 268 Target range: 212896 -> 213634 26 : IleLeuAsnAlaLeuGlyIleTrpProSerLeuGlyLysArgLysSerIleCysLysA : 45 :!!|||!!. !! !|||:!:||||||..! !..! ! !..! !!||| |||! LeuLeuLysProThrGlyLeuTrpProAspLysSerTyrValSerProIleGluLysA 212897 : CTTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAA : 212954 46 : rgLeuValAspTyrLeuLeuIlePheLeuSerTyrSerLeuIlePheAlaSerLeuIl : 64 .!:!!!.! |||:!!! ! !:!!!!!|||.!!|||||| ! ! !:!!|| snIleAla---ArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIl 212955 : ACATCGCT---CGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAAT : 213008 65 : eProSerSerLeuPhe<->TrpValPheLysGlyThrIleArgThrArgValArgMet : 82 ||||!!!||||||!:! !:::!! ! ! ...||| ...:!!..!:!! eProCysSerLeuTyrValPheLeuAspValGluAsnIlePheLysGluIleGluLeu 213009 : ACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaagagaTCGAATTG : 213065 83 : PheLeuProLeuAlaTyrThrIleAlaAlaValSerLysTyrGlyIleLeuIleLeuG : 102 ||| ! !!!!|||!:! !:!:||||||:!!!!!|||||| ! ||||||||| PheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuH 213066 : TTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTC : 213125 103 : lyGlnAspArgIleArgHisCysValLysTyrIleGluGluAspTrpLysAsnValAl : 121 ! ||| !|||||| ||||||:!!:!!!!::!! ! ||||||||||||:!!.! isGlyAspAspIleArgThrCysValGluHisMetLysTyrAspTrpLysAsnIleTh 213126 : ACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCAC : 213182 122 : aAsnValAspAlaArgAsnMetMetArgGluSerAlaArgValGlyArgArgLeuVal : 140 !:!!! !!!:! !!:!.!.!!:||| ! !!:!|||!!! !!|||!:!|||:!!||| rHisGluGluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleVal 213183 : GCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTG : 213239 141 : AlaIleSerIleSerPhe<->TyrCysSerSerIleMetSerValArgLeuIleProL : 159 .!!|||!!! !! !||| ||| .!!! !! .!.! ! !!! !:!!:!!|||: ThrIleCysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuValValProI 213240 : ACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGA : 213299 160 : euLeuTyrLeuGlyLysIleValAspGlnTyrAsnValThrIleArgLeuLeuProTh : 178 !! ! ! !! !:!!!.!!!:.!. !|||||||||.!!|||! !:!! !.. leSerAlaAspLysMetValAlaGluAspLeuAsnValThrPheArgGlnMetValVa 213300 : TCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGT : 213356 179 : rProAlaTyrLeuPheSerLeuAspValGlnAlaThrProValTyrGluIleMetTyr : 197 !|||!.!! !|||! !:!!||||||!:! !!:!|||||| !!||||||.!.!:! lProValSerArgPheIleValAspValArgTyrSerProValAsnGluIlePhePhe 213357 : CCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTC : 213413 198 : SerLeuGlnGlyAlaTyrGlyIleValThrAlaSerIleSerThrGlyGlyIleGlyL : 217 ! !:!!||| ! ! !|||:!!:!!! ! !:!!|||:!!..!! !!.! !.!!| LeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSerL 213414 : TTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCT : 213473 218 : euIleThrIlePheValMetHisAlaCysGlyGlnLeuLysIleLeuMetAsnLeuMe : 236 || !.!!:!:|||!.!:!:|||||||||||||||:!! |||||||||!:!! !:! euAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLe 213474 : TGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCT : 213530 237 : tSerGluPheSerGluAspLeuGln<-><->GlnLysGluValAspLysLysLeuAla : 253 !..!.!.!!.! !!!:! ! !:!! ...|||.!.|||||| ! !:!:!!||| uGluHisLeuIleAspGlyArgGluAspMetSerLysAsnValAspAspArgIleAla 213531 : GGAACATTTGATAGACGGTAGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCG : 213587 254 : AsnIleValGluHisGlnIleArgIleArgAsnPheLeuGlnLeu : 268 !||||||.!.!!.!!.:!:||||||! !!!.!:::!!:!!||| ValIleValAsnGlnHisValArgIleLeuLysTrpValGluLeu 213588 : GTCATCGTGAACCAGCATGTGCGGATACTGAAGTGGGTGGAATTG : 213634 vulgar: CbirOr7 25 268 . KQ414889.1 212896 213634 + 267 M 22 66 G 1 0 M 21 63 G 0 3 M 77 231 G 0 3 M 98 294 G 0 6 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212897 213634 267 + . gene_id 4 ; sequence CbirOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212897 213634 . + . KQ414889.1 exonerate:protein2genome:local exon 212897 213634 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212897 213634 267 + . alignment_id 4 ; Query CbirOr7 ; Align 212897 26 66 ; Align 212963 49 63 ; Align 213029 70 231 ; Align 213263 147 294 ; Align 213563 245 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 264 Query range: 8 -> 262 Target range: 289708 -> 290476 9 : AsnValTyrTyrValGlnAspLeuLysTyrAlaArgMetPheValProAsnIleLeuA : 28 |||! ! !|||! ! !|||:!!:::|||.!! ! !!. !! ! ||||||! AsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleLeuL 289709 : AACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCTTGA : 289766 29 : snAlaLeuGlyIleTrpProSerLeuGlyLysArgLysSerIleCysLysArgLeuVa : 47 !. !!:!!|||!!:!::|||! !:!! !!..||| !|||! ! !!:!!||| !!. ysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgThrAl 289767 : AACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGC : 289823 48 : lAspTyrLeuLeuIlePheLeuSerTyrSerLeuIlePheAlaSerLeuIleProSer : 66 !... |||||||||.!.:!!!!!! !|||:!!:!! !! !:!!:!!|||! ! aSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValProPhe 289824 : GTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCGTTC : 289880 67 : SerLeuPheTrpValPheLys<->GlyThrIleArgThrArgValArgMetPheLeuP : 85 |||! ! ! :!!|||!.. ..! !!!:!.!||| !|||!:!! .!! !| SerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuGlyP 289881 : AGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCGGAC : 289940 86 : roLeuAlaTyrThrIleAlaAlaValSerLysTyrGlyIleLeuIleLeuGlyGlnAs : 104 |||||.!!!:! !:!:.!!.!! !!! !|||||| !! !!!!! !:!! ! .. roLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGlySe 289941 : CGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGGTTC : 289997 105 : pArgIleArgHisCysValLysTyrIleGluGluAspTrpLysAsnValAlaAsnVal : 123 . !||| !!!.!|||||||||:!!||||||..!|||||||||! :!! !:!!! ! rAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAspGlu 289998 : AGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGACGAG : 290054 124 : AspAlaArgAsnMetMetArgGluSerAlaArgValGlyArgArgLeuValAlaIleS : 143 ||| !||| !!!:|||! !..!! !!.!! !:!!.!!|||!.!|||:!! !:!:! AspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysLeuC 290055 : GATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAACTGT : 290114 144 : erIleSerPheTyrCysSerSerIleMetSerValArgLeuIleProLeuLeuTyrLe : 162 !! ! !|||! ! !! !.!! !:!!||| !!.! !:!! !! !|||!:!! ysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPheSe 290115 : GCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTTCTC : 290171 163 : uGlyLysIleValAspGlnTyrAsnValThrIleArgLeuLeuProThrProAlaTyr : 181 ! !|||! !|||:!! |||||||||||||||! !||| !! !|||!.!||| rLysLysSerValAsnGly---AsnValThrIleArgProLeuThrTyrProGlyTyr 290172 : GAAGAAGAGCGTGAACGGT---AACGTGACTATCAGACCTCTAACTTATCCCGGTTAC : 290225 182 : LeuPheSerLeuAspValGlnAlaThrProValTyrGluIleMetTyrSerLeuGlnG : 201 ! ! !!!!||||||||| !!:!|||!.!|||||||||:!:!:!!!!:!!!!. GluGluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetHisC 290226 : GAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACT : 290285 202 : lyAlaTyrGlyIleValThrAlaSerIleSerThrGlyGlyIleGlyLeuIleThrIl : 220 !!!.!|||! !!!::!!||||||!:!|||!!!! !!.!!.! !.!!|||! ||||| ysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIl 290286 : GTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGAT : 290342 221 : ePheValMetHisAlaCysGlyGlnLeuLysIleLeuMetAsnLeuMetSerGluPhe : 239 ||||!.!! |||.!!|||||||||:!!||||||! !! !!..! !:!!..!!!:.!. ePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAspLeu 290343 : CTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTG : 290399 240 : SerGluAsp<-><->LeuGlnGlnLysGluValAspLysLysLeuAlaAsnIleValG : 257 !!!:!! ||| !:!!|||! !|||..! ! :::|||||| !:!!|||. ThrLysArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValValValS 290400 : ACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTGTGA : 290459 258 : luHisGlnIleArgIle : 262 .. !!!.:!:..!||| erGlyHisValGluIle 290460 : GCGGTCACGTGGAGATC : 290476 vulgar: CbirOr7 8 262 . KQ414889.1 289708 290476 + 264 M 65 195 G 0 3 M 95 285 G 1 0 M 73 219 G 0 6 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289709 290476 264 + . gene_id 5 ; sequence CbirOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289709 290476 . + . KQ414889.1 exonerate:protein2genome:local exon 289709 290476 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 289709 290476 264 + . alignment_id 5 ; Query CbirOr7 ; Align 289709 9 195 ; Align 289907 74 285 ; Align 290192 170 219 ; Align 290417 243 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 262 Query range: 25 -> 262 Target range: 226954 -> 227674 26 : IleLeuAsnAlaLeuGlyIleTrpProSerLeuGlyLysArgLysSerIleCysLysA : 45 :!:|||!!. !!|||||||||||||||||| ..!:::!:!!..||| ! !| LeuLeuLysProLeuGlyIleTrpProSer---SerArgLysSerSerArgIleGlyA 226955 : CTGTTGAAACCACTCGGTATCTGGCCGTCG---TCGCGCAAAAGCTCTCGAATAGGAA : 227009 46 : rgLeuValAspTyrLeuLeuIlePheLeuSerTyrSerLeuIlePheAlaSerLeuIl : 64 ||! ! !!..!!::|||:!! !||||||!!!|||:!!|||!!: ! !..!|||:! rgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuVa 227010 : GATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGT : 227066 65 : eProSerSerLeuPheTrpValPheLys<->GlyThrIleArgThrArgValArgMet : 82 ! !!|||.!!|||!:! !|||.!.:!! ! ! ! !!.!! !:!!!:!||| lSerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMet 227067 : CTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATG : 227123 83 : PheLeuProLeuAlaTyrThrIleAlaAlaValSerLysTyrGlyIleLeuIleLeuG : 102 .!! !|||:!!:!!!:! ! !:!!:!! !||||||..!!!:|||! !!! IleGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheH 227124 : ATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCC : 227183 103 : lyGlnAspArgIleArgHisCysValLysTyrIleGluGluAspTrpLysAsnValAl : 121 !:!!||| !|||! !.!.||||||:!! |||:!! !||||||||||||:!! isGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleAr 227184 : ACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAG : 227240 122 : aAsnValAspAlaArgAsnMetMetArgGluSerAlaArgValGlyArgArgLeuVal : 140 ! !!:!!!!:! !||||||:!!||| ! !! !||| ! !||||||!:!|||:!! gTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIle 227241 : ATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATC : 227297 141 : AlaIleSerIleSerPheTyrCysSerSerIleMetSerValArgLeuIleProLeuL : 160 .!!|||!!!! ! !||| !! !||||||...::: :!!:!! !! !: ThrIleCysThrPhePheValPheSerSerPheValPhePheTyrIleValValProI 227298 : ACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTA : 227357 161 : euTyrLeuGlyLysIle<->ValAspGlnTyrAsnValThrIleArgLeuLeuProTh : 178 !! !! !|||!..:!! ..!!!:.!. ||| !!:! !! !! !:!!||| leAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPh 227358 : TCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTT : 227414 179 : rProAlaTyrLeuPheSerLeuAspValGlnAlaThrProValTyrGluIleMetTyr : 197 !||| ! !.!!! ! !||||||!:: !!:!||| !! !!||||||.!.!:! eProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGluIlePhePhe 227415 : TCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTT : 227471 198 : SerLeuGlnGlyAlaTyrGlyIleValThrAlaSerIleSerThrGlyGlyIleGlyL : 217 |||:!!||| !!.! ||||||||| ! !.!!:!!!!!:!!!.!!.! !.!!: SerValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerM 227472 : TCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTA : 227531 218 : euIleThrIlePheValMetHisAlaCysGlyGlnLeuLysIleLeuMetAsnLeuMe : 236 !! !.!!:!:.!!!.!:!:|||||||||||||||:!!:!!:!:|||:!!::!! !:! etAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLe 227532 : TGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCT : 227588 237 : tSerGluPheSerGluAspLeu<-><->GlnGlnLysGluValAspLysLysLeuAla : 253 !.!!.!.!!.! !!!:! ! ! ..!...||| !:!!||| ! !:!:!!||| uGlyHisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAspAspArgIleAla 227589 : GGGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCT : 227645 254 : AsnIleValGluHisGlnIleArgIle : 262 !:!|||||| |||!!.:!!|||||| SerIleValThrHisHisValArgIle 227646 : AGCATCGTCACTCACCACGTTCGAATA : 227674 vulgar: CbirOr7 25 262 . KQ414889.1 226954 227674 + 262 M 10 30 G 1 0 M 37 111 G 0 3 M 92 276 G 0 3 M 78 234 G 0 6 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226955 227674 262 + . gene_id 6 ; sequence CbirOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226955 227674 . + . KQ414889.1 exonerate:protein2genome:local exon 226955 227674 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226955 227674 262 + . alignment_id 6 ; Query CbirOr7 ; Align 226955 26 30 ; Align 226985 37 111 ; Align 227099 74 276 ; Align 227378 166 234 ; Align 227618 244 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 260 Query range: 8 -> 262 Target range: 303169 -> 304863 9 : AsnValTyrTyrValGlnAspLeuLysTyrAlaArgMetPheValProAsnIleLeuA : 28 |||:!! !!||| !:!!|||:!! |||!.!! !! ! ! ! ! ||||||! AsnLeuAsnTyrLysLysAspIleValTyrValThrLysHisSerLysTrpIleLeuL 303170 : AATTTGAATTACAAGAAAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCCTGA : 303227 29 : snAlaLeuGlyIleTrpProSerLeuGlyLysArgLysSerIleCysLysArgLeuVa : 47 !.:!!|||||||||||||||:!!:!! ! ! ..!! :!! !!!!!:! ysSerLeuGlyIleTrpProAlaValLeuAspGluThrAla---------GlyPheLe 303228 : AGTCCCTTGGTATTTGGCCAGCCGTGTTGGACGAAACCGCA---------GGATTCCT : 303275 48 : lAspTyrLeuLeuIlePheLeuSerTyrSerLeuIlePheAlaSerLeuIleProSer : 66 ! ! :!! !||| |||||| !!! !:!!:!!!!. !!!!:!!||||||!!! uProLysIleThrIleGlyLeuSerAsnLeuValLeuLeuPheThrValIleProCys 303276 : ACCAAAAATCACCATTGGACTCAGTAATTTGGTTCTATTATTCACCGTGATACCGTGT : 303332 67 : SerLeuPheTrpValPhe<->LysGlyThrIleArgThrArgValArgMetPheLeuP : 85 ! !||| ! :!!||| :!! ! !! ! !! !|||:!!!:!:!:||| !! IleLeuHisIleIlePheGluGlnLysAspThrIleIleArgLeuLysLeuPheGlyL 303333 : ATTCTACACATAATATTCGAACAAAAGGATACGATAATAAGATTGAAACTATTCGGTC : 303392 86 : roLeuAlaTyrThrIleAlaAlaValSerLysTyrGlyIleLeuIleLeuGlyGlnAs : 104 !|||::!!:! !:!: !:!!:!!! !|||||| !! !||| ! ! !!:!! euLeuSerPheCysLeuIleSerLeuMetLysTyrTrpAlaLeuAlaThrArgLysPr 303393 : TGCTGAGTTTCTGTTTGATCTCGTTGATGAAGTATTGGGCCCTCGCCACGCGGAAACC : 303449 105 : pArgIleArgHisCysValLysTyrIleGluGluAspTrpLysAsnValAlaAsnVal : 123 ||||||!:!.!.|||:!!:!! ! :!::!!...|||||||||.!.||| !:!||| oArgIleLysGluCysIleGluGluValGlnSerAspTrpLysGluVal---SerVal 303450 : AAGGATCAAAGAATGTATAGAAGAGGTGCAAAGTGATTGGAAAGAGGTG---AGTGTT : 303503 124 : AspAlaArgAsnMetMetArgGluSerAlaArgValGlyArgArgLeuValAlaIleS : 143 ! !!.!!..:::::: :::::: |||..! ! !! !|||||| !! CysIleHisArgValLeuIleLysAsnArgThrValSerLeuTyrTyrValAla***C 303504 : TGCATTCATAgagtattaattaaaaatcgaactGTTTCATTATATTATGTAGCATAAT : 303563 144 : erIleSerPheTyrCysSerSerIleMetSerVal >>>> Target Intron 1 : 155 !!.!!!.! ! ! .!!||||||! !:!:!! 941 bp ysPheLysGluGluSerGlySerIleThrAsnLeu++ 303564 : GCTTCAAAGAGGAATCAGGTAGTATTACTAACTTAgt..................... : 303601 156 : >>>> ArgLeuIleProLeuLeuTyrLeuGlyLysIleValAspGlnTyrAsnValT : 172 !.! !:!! !! !!!! !|||! ! !||||||:!!|||||| !| +-HisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgT 303602 : ....atCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTA : 304591 173 : hrIleArgLeuLeuProThrProAlaTyrLeuPheSerLeuAspValGlnAlaThrPr : 191 |||||!:!! !||| ! !|||.!!||| ! !! !!!!|||||||||.!!!:!|| hrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerPr 304592 : CGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCC : 304648 192 : oValTyrGluIleMetTyrSerLeuGlnGlyAlaTyrGlyIleValThrAlaSerIle : 210 |:!!||||||:!::!:|||! !:!!!!. !! !! !||| !|||! ! !|||||| oIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIle 304649 : TATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATA : 304705 211 : SerThrGlyGlyIleGlyLeuIleThrIlePheValMetHisAlaCysGlyGlnLeuL : 230 !!!.!!|||!.! !|||||| !.!!:!!|||!.!! |||||||||||||||:!! ThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleA 304706 : ACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTG : 304765 231 : ysIleLeuMetAsnLeuMetSerGluPheSerGluAspLeuGlnGlnLysGluValAs : 249 ! |||:!!|||::!! !:!!.!!!!:.!! !.!...! !:!!..!...!!::!!|| spIleValMetSerArgLeuGlyAspLeuValAsnSerLysGluSerSerAspLeuAs 304766 : ATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCATCTGATTTAGA : 304822 250 : pLysLysLeuAlaAsnIleValGluHisGlnIleArgIle : 262 ||||::!||| !.!.||||||||||||!!.:!:|||||| pLysArgLeuIleGluIleValGluHisHisLeuArgIle 304823 : TAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATT : 304863 vulgar: CbirOr7 8 262 . KQ414889.1 303169 304863 + 260 M 33 99 G 3 0 M 28 84 G 0 3 M 48 144 G 1 0 M 33 99 5 0 2 I 0 937 3 0 2 M 108 324 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303170 304863 260 + . gene_id 7 ; sequence CbirOr7 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303170 303598 . + . KQ414889.1 exonerate:protein2genome:local exon 303170 303598 . + . insertions 3 ; deletions 4 KQ414889.1 exonerate:protein2genome:local splice5 303599 303600 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303599 304539 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304538 304539 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 304540 304863 . + . KQ414889.1 exonerate:protein2genome:local exon 304540 304863 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303170 304863 260 + . alignment_id 7 ; Query CbirOr7 ; Align 303170 9 99 ; Align 303269 45 84 ; Align 303356 73 144 ; Align 303500 122 99 ; Align 304540 155 324 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 256 Query range: 12 -> 268 Target range: 232444 -> 233221 13 : ValGlnAspLeuLysTyrAlaArgMetPheValProAsnIleLeuAsnAlaLeuGlyI : 32 ..!!:!|||! !:!!|||::!! !..! ! !! ! .!!|||!.. !!:!!||| ThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyA 232445 : ACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCG : 232502 33 : leTrpProSerLeuGlyLysArgLysSerIleCysLysArgLeuValAspTyrLeuLe : 51 !|||||| !!:!! ! !..!! |||! !..!:!!!:!|||:!!! ! ||||| laTrpProArgVal---ThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLe 232503 : CATGGCCGCGTGTT---ACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTT : 232556 52 : uIlePheLeuSerTyrSerLeuIlePheAlaSerLeuIleProSerSerLeuPheTrp : 70 |! !.!! !!!!:!!||||||!!:.!!:!!|||:!!:!!|||!!!! !|||||| uArgLeuThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIle 232557 : GAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATC : 232613 71 : ValPheLysGlyThr<->IleArgThrArgValArgMetPheLeuProLeuAlaTyrT : 89 :!!|||:!!! !||| :!!..! !|||:!!!:! .!! !|||:!!::!:!! LeuPheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisP 232614 : CTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACT : 232673 90 : hrIleAlaAlaValSerLysTyrGlyIleLeuIleLeuGlyGlnAspArgIleArgHi : 108 !:!: !!.!! !! !!!.||| !! !|||:!: ! ! !:!! !|||! !:! heLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTy 232674 : TTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTA : 232730 109 : sCysValLysTyrIleGluGluAspTrpLysAsnValAlaAsnValAspAlaArgAsn : 127 !||||||:!! ! :!::!!:!!||||||::!|||||| !!!. !! ! !|||:!! rCysValGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAsp 232731 : TTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGAT : 232787 128 : MetMetArgGluSerAlaArgValGlyArgArgLeuValAlaIleSerIleSerPheT : 147 :!!||| !:!!!:!|||!:!:!!|||||| !:!!!.!..!|||:!! ! !! ! LeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysM 232788 : CTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCA : 232847 148 : yrCysSerSerIleMetSerValArgLeuIleProLeuLeuTyrLeuGlyLysIle<- : 166 !!!!.!!:!! |||! !..!:!!:!! !! !||| !:!!.!!! !.!! etHisThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTy 232848 : TGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTA : 232904 167 : >ValAspGlnTyrAsnValThrIleArgLeuLeuProThrProAlaTyrLeuPheSer : 184 |||! .!. ! !:! !:!!!!: !! !|||||| ! !! !||| ! ! rValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeu 232905 : CGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTG : 232961 185 : LeuAspValGlnAlaThrProValTyrGluIleMetTyrSerLeuGlnGlyAlaTyrG : 204 :!!|||..!::! !!:!|||..! !!|||||||||!:! !|||||| !! !! !| MetAspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerG 232962 : ATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCG : 233021 205 : lyIleValThrAlaSerIleSerThrGlyGlyIleGlyLeuIleThrIlePheValMe : 223 ||.!!:!!..! !|||:!!!!!..!|||!.! !|||||| !.!!:!!.!.!.!|| lyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMe 233022 : GGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGAT : 233078 224 : tHisAlaCysGlyGlnLeuLysIleLeuMetAsnLeuMetSerGluPheSerGluAsp : 242 |||||||||||||||||||!!.:!::!!|||::: !:!!..!!!:!!. !!!:! tHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAla 233079 : GCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCG : 233135 243 : LeuGlnGlnLysGlu<-><->ValAspLysLysLeuAlaAsnIleValGluHisGlnI : 260 ! !|||:!!||| !.!.!.!:!||||||!.! !||||||||||||!!.: LysGlyGlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisL 233136 : AAAGGGCAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATT : 233195 261 : leArgIleArgAsnPheLeuGlnLeu : 268 !:|||! ! !!..!:!|||...:!! euArgThrLeuArgTyrLeuSerVal 233196 : TGCGTACATTAAGGTATTTGTCTGTG : 233221 vulgar: CbirOr7 12 268 . KQ414889.1 232444 233221 + 256 M 24 72 G 1 0 M 38 114 G 0 3 M 90 270 G 0 3 M 82 246 G 0 6 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232445 233221 256 + . gene_id 8 ; sequence CbirOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232445 233221 . + . KQ414889.1 exonerate:protein2genome:local exon 232445 233221 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 232445 233221 256 + . alignment_id 8 ; Query CbirOr7 ; Align 232445 13 72 ; Align 232517 38 114 ; Align 232634 76 270 ; Align 232907 166 246 ; Align 233159 248 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 255 Query range: 25 -> 239 Target range: 262873 -> 263518 26 : IleLeuAsnAlaLeuGlyIleTrpProSerLeuGlyLysArgLysSerIleCysLysA : 45 :!:|||!!. !!:!!||| !|||||| |||..! !! |||! ! :!!| LeuLeuLysProIleGlyAlaTrpPro---LeuSerAlaSerIleSerArgMetGluA 262874 : CTGCTGAAACCGATCGGTGCATGGCCA---CTGTCCGCCTCGATCTCAAGAATGGAAC : 262928 46 : rgLeuValAspTyrLeuLeuIlePheLeuSerTyrSerLeuIlePheAlaSerLeuIl : 64 ||:!!:!! !:!||||||||| !!:!!!!!|||!!!||||||.!.:!!!!!:!!|| rgIleIleTrpPheLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIl 262929 : GAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTAT : 262985 65 : eProSerSerLeuPheTrpValPheLysGly<->ThrIleArgThrArgValArgMet : 82 |||||||! !||| ! |||.!.:!!!.! !.!.!!!.!! !!:!:!!!:!:!: eProSerIleLeuHisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnVal 262986 : CCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTT : 263042 83 : PheLeuProLeuAlaTyrThrIleAlaAlaValSerLysTyrGlyIleLeuIleLeuG : 102 .!! !||||||!.! ! !.!!!.!!.!:!!! !!!.||| ! |||:!:||| LeuGlyProLeuGlyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuH 263043 : CTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTC : 263102 103 : lyGlnAspArgIleArgHisCysValLysTyrIleGluGluAspTrpLysAsnValAl : 121 !... ! !|||!:! !||||||:!!:!!:!::!!||||||||| ! !|||.! isSerLysAspIleGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValTh 263103 : ACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGAC : 263159 122 : aAsnValAspAlaArgAsnMetMetArgGluSerAlaArgValGlyArgArgLeuVal : 140 !!..:!!!!:! !!:!..!!!:|||! !:!!!:!|||!:! !|||||| !:!!!.! rArgLeuGluAspGlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAla 263160 : CAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCA : 263216 141 : AlaIleSerIleSerPheTyrCysSerSerIleMetSerValArgLeuIleProLeuL : 160 ||| !!!! ! !||| !!!|||||||||!!! ! !!|||:!! !! !! AlaSerCysAlaIlePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaP 263217 : GCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGT : 263276 161 : euTyrLeuGlyLysIleValAspGlnTyrAsnValThrIle<->ArgLeuLeuProTh : 178 !! ! ! ! !|||! !||| !!.!...!! !||| |||:!!|||||| heThrThrGlnValIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCy 263277 : TCACTACACAGGTGATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTG : 263333 179 : rProAlaTyrLeuPheSerLeuAspValGlnAlaThrProValTyrGluIleMetTyr : 197 !|||!.!||| ! ! !:!! |||.!..!!!.!|||..! !!||||||.!. ! sProValTyrLysGluIleIleProValAspThrAsnProThrAsnGluIlePheLeu 263334 : TCCAGTGTACAAAGAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTC : 263390 198 : SerLeuGlnGlyAlaTyrGlyIleValThrAlaSerIleSerThrGlyGlyIleGlyL : 217 :!! !||| ! !! |||.!!:!!..!.!!:!!! !!!!..!|||!.!.!!|||: AlaThrGlnPheLeuSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyM 263391 : GCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTA : 263450 218 : euIleThrIlePheValMetHisAlaCysGlyGlnLeuLysIleLeuMetAsnLeuMe : 236 !!! !.!!:!:|||!.! ||||||||||||||||||!!.:!:||||||::!! !!! etThrAlaValPheAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIl 263451 : TGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGAT : 263507 237 : tSerGluPhe : 239 :!!!|||||| eThrGluPhe 263508 : CACGGAATTC : 263518 vulgar: CbirOr7 25 239 . KQ414889.1 262873 263518 + 255 M 9 27 G 1 0 M 39 117 G 0 3 M 99 297 G 0 3 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262874 263518 255 + . gene_id 9 ; sequence CbirOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262874 263518 . + . KQ414889.1 exonerate:protein2genome:local exon 262874 263518 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 262874 263518 255 + . alignment_id 9 ; Query CbirOr7 ; Align 262874 26 27 ; Align 262901 36 117 ; Align 263021 75 297 ; Align 263321 174 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 251 Query range: 25 -> 262 Target range: 266661 -> 267384 26 : IleLeuAsnAlaLeuGlyIleTrpProSerLeuGlyLysArgLysSerIleCysLysA : 45 .!!|||!!. !!:!!||| !|||||| !!|||..! ! !...!.!:!! :!!| PheLeuLysProIleGlyAlaTrpProProLeuSerLeuThrSerLysLeu---GluA 266662 : TTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCACATCTAAACTC---GAAC : 266716 46 : rgLeuValAspTyrLeuLeuIlePheLeuSerTyrSerLeuIlePheAlaSerLeuIl : 64 ||:!!|||..!||| !|||||| !!:!!!!!|||!!!! !|||.!. !!!!:!!|| rgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIleLeuPheThrValIl 266717 : GAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATACTGTTCACCGTAAT : 266773 65 : eProSerSerLeuPheTrpValPheLysGly<->ThrIleArgThrArgValArgMet : 82 ||||!!!! !!!! ! |||.!.:!!! ! !:!|||||||||!:!|||!:!:!! eProCysLeuPheHisLeuValLeuGluAspGluSerIleArgThrLysValLysVal 266774 : CCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTACGAAAGTGAAGGTG : 266830 83 : PheLeuProLeuAlaTyrThrIleAlaAlaValSerLysTyrGlyIleLeuIleLeuG : 102 ||| !||||||::!:!! !.!!!.!!.!! !! !!!.||| !! !|||:!:||| PheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrThrThrLeuLeuLeuA 266831 : TTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACACCACACTGTTGCTAC : 266890 103 : lyGlnAspArgIleArgHisCysValLysTyrIleGluGluAspTrpLysAsnValAl : 121 !!... ! ..!|||||| !||||||:!!:!!!!::!! !||||||!:!! !|||.! rgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValTh 266891 : GCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGATTGGAGGATCGTGAC : 266947 122 : aAsnValAspAlaArgAsnMetMetArgGluSerAlaArgValGlyArgArgLeuVal : 140 !!.. !!!:! !!:!.!.:!!||| !:!!!:!||||||:!!|||||| !:!!!.! rArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleGlyArgTyrIleAla 266948 : CAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCGGTCGTTACATTGCT : 267004 141 : AlaIleSerIleSerPheTyrCysSerSerIleMetSerValArgLeuIleProLeuL : 160 !.!!!!! :!!||| !!!.!!:!!:!:.!! ! !!:!!||| !! !! IlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCysValIleThrAlaP 267005 : ATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGTGATAACGGCGT : 267064 161 : euTyrLeuGlyLysIle<->ValAspGlnTyrAsnValThrIleArgLeuLeuProTh : 178 !! !:!! !! :!: |||! !.!. ! !.! !! !:!!!.!||||||||| heThrMetGlnThrValGluValGlyAsnGluThrArgIleValHisLeuLeuProCy 267065 : TCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTACATCTGTTGCCCTG : 267121 179 : rProAlaTyrLeuPheSerLeuAspValGlnAlaThrProValTyrGluIleMetTyr : 197 ! !!!.!||| ! ! !:!!! |||.!..!!!:!|||..! !!||||||:!: ! sAlaValTyrLysLysMetIleAlaValAspThrSerProThrAsnGluIleValLeu 267122 : TGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGAACGAGATTGTCCTT : 267178 198 : SerLeuGlnGlyAlaTyrGlyIleValThrAlaSerIleSerThrGlyGlyIleGlyL : 217 !! !||| !!.!! |||.!!:!!..! !|||! ! !..!|||!.!.!!.!!| ValSerGlnPheValSerGlyPheIleValAsnSerSerValValGlyAlaPheSerL 267179 : GTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCGGTGCTTTCAGCC : 267238 218 : euIleThrIlePheValMetHisAlaCysGlyGlnLeuLysIleLeuMetAsnLeuMe : 236 || !.!!:!:|||!.! ||||||||||||||||||!..:!:||||||! ! !!! euAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerValLeuMetMetTrpIl 267239 : TTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTGATGATGTGGAT : 267295 237 : tSerGluPhe<-><-><->SerGluAspLeuGlnGlnLysGluValAspLysLysLeu : 252 :!.!|||||| |||..!||| !.!.:!!!!.! ! ! ! |||:!! eLysGluPheValAsnArgSerArgAspSerAsnLysAsnValCysPheAspLysIle 267296 : CAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTTGCTTCGATAAGATT : 267352 253 : AlaAsnIleValGluHisGlnIleArgIle : 262 !.! :!!|||||||||!!.:!:|||:!! GlyValValValGluHisHisLeuArgVal 267353 : GGCGTGGTCGTTGAACATCATCTGAGAGTT : 267384 vulgar: CbirOr7 25 262 . KQ414889.1 266661 267384 + 251 M 17 51 G 1 0 M 31 93 G 0 3 M 91 273 G 0 3 M 74 222 G 0 9 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266662 267384 251 + . gene_id 10 ; sequence CbirOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266662 267384 . + . KQ414889.1 exonerate:protein2genome:local exon 266662 267384 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 266662 267384 251 + . alignment_id 10 ; Query CbirOr7 ; Align 266662 26 51 ; Align 266713 44 93 ; Align 266809 75 273 ; Align 267085 166 222 ; Align 267316 240 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 242 Query range: 5 -> 262 Target range: 217138 -> 217918 6 : ProSerLeuAsnValTyrTyrValGlnAspLeuLysTyrAlaArgMetPheValProA : 25 |||!!! !:!! ! ! ||| :::::::::... ::!! !...!:: !! ! ProArgThrAspTyrGluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgT 217139 : CCCAGAACCGACTACGAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTT : 217196 26 : snIleLeuAsnAlaLeuGlyIleTrpProSerLeuGlyLysArgLysSerIleCysLy : 44 :!:|||!!. !!:!!|||:!!||||||!:! ..!:::! !! !!!! !! !:: rpLeuLeuLysProMetGlyLeuTrpProAsn---SerArgThrThrThrArgSerAr 217197 : GGTTGTTGAAACCGATGGGTCTTTGGCCAAAC---TCACGTACCACCACCAGATCCCG : 217250 45 : sArgLeuValAspTyrLeuLeuIlePheLeuSerTyrSerLeuIlePheAlaSerLeu : 63 !!:!:!!:!! !! ! |||:!!! ! !|||!!!|||.!!|||||| ! ! !!!! gLysIleLeuTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPhe 217251 : AAAAATCCTCTACAAACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTC : 217307 64 : IleProSerSerLeuPhe<->TrpValPheLysGlyThrIleArgThrArgValArgM : 82 :!!|||!!!|||:!!!:! !:::!! ! ! !:!! ! !!:!:!!!:!: ValProCysSerMetTyrValPheLeuGluValGluAspLeuTyrAspLysLeuLysL 217308 : GTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAAC : 217367 83 : etPheLeuProLeuAlaTyrThrIleAlaAlaValSerLysTyrGlyIleLeuIleLe : 101 !!||| !|||||| !!:! !:!: !||| !! !|||||| ! !||||||:! euPheGlyProLeuIlePheCysValMetAlaPheValLysTyrTyrSerLeuIleVa 217368 : TGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGT : 217424 102 : uGlyGlnAspArgIleArgHisCysValLysTyrIleGluGluAspTrpLysAsnVal : 120 ! !:!!! !||||||.!.||||||!:! ||||||..!||||||!:!|||||| lHisLysAlaAspIleArgGluCysValArgArgIleGluArgAspTrpArgAsnVal 217425 : TCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTC : 217481 121 : AlaAsnValAspAlaArgAsnMetMetArgGluSerAlaArgValGlyArgArgLeuV : 140 ! !! ! ! ! !|||.!. !|||! !! !!:!|||!.! !!||||||!:!|||| ArgCysGluLysAspArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuV 217482 : AGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGG : 217541 141 : alAlaIleSerIleSerPheTyrCysSerSerIleMetSerValArgLeuIleProLe : 159 || !:!!!!!! !! !||| ! !|||......::: ::! ! !! alLeuLeuCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIlePr 217542 : TCCTACTCTGTACCTTCTTCATGTACAGCggtttcgttttttattacatCGCTATACC : 217598 160 : uLeuTyrLeuGlyLysIleValAspGlnTyr<->AsnValThrIleArgLeuLeuPro : 177 !:!! !:!!|||!:!|||:!!...:!! !! |||:!!|||.!!! !! !||| ! oIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeuVal 217599 : GATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTG : 217655 178 : ThrProAlaTyrLeuPheSerLeuAspValGlnAlaThrProValTyrGluIleMetT : 197 !||| ! !!:!! !:!!|||..!!:: !||||||..! !!||||||:!!! PheProPheThrLysTyrIleIleAspThrArgTyrThrProThrAsnGluIleValP 217656 : TTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGT : 217715 198 : yrSerLeuGlnGlyAlaTyrGlyIleValThrAlaSerIleSerThrGlyGlyIleGl : 216 :!! !|||||| ! ! !||| !:!!! ! !.!!|||!!!:!!!.!!.! !.! hePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSe 217716 : TTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAG : 217772 217 : yLeuIleThrIlePheValMetHisAlaCysGlyGlnLeuLysIleLeuMetAsnLeu : 235 !||| .!! !|||!.!:!:|||||||||||||||:!!:!!:!:|||||||||! ! rLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGluValLeuMetAsnTrp 217773 : TTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGG : 217829 236 : MetSerGluPheSerGluAspLeu<-><->GlnGlnLysGluValAspLysLysLeuA : 253 :!!..!.!.!!.! !!!:! ! ! ..!... ! |||||| !:!:!!| LeuGlnHisLeuIleAspGlyArgAlaAspMetSerAspThrValAspGlyArgIleA 217830 : CTGCAACATTTAATCGACGGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCG : 217889 254 : laAsnIleValGluHisGlnIleArgIle : 262 ||!:!||||||...!!.!!.:!!|||||| laSerIleValSerGlnHisValArgIle 217890 : CGAGCATCGTCAGTCAACACGTTCGGATA : 217918 vulgar: CbirOr7 5 262 . KQ414889.1 217138 217918 + 242 M 30 90 G 1 0 M 33 99 G 0 3 M 100 300 G 0 3 M 74 222 G 0 6 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217139 217918 242 + . gene_id 11 ; sequence CbirOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217139 217918 . + . KQ414889.1 exonerate:protein2genome:local exon 217139 217918 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217139 217918 242 + . alignment_id 11 ; Query CbirOr7 ; Align 217139 6 90 ; Align 217229 37 99 ; Align 217331 70 300 ; Align 217634 170 222 ; Align 217862 244 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 232 Query range: 17 -> 247 Target range: 259772 -> 260465 18 : TyrAlaArgMetPheValProAsnIleLeuAsnAlaLeuGlyIleTrpProSerLeuG : 37 |||::!! !...||| !! ! .!!|||!!. !!:!!||| !|||||| !!! !. TyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerS 259773 : TATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCAT : 259830 38 : lyLysArgLysSerIleCysLysArgLeuValAspTyrLeuLeuIlePheLeuSerTy : 56 .!...! !! !!!:!! :!!!:!:!!:!!..! !:!!|||||||||:!!!!!|| erSerThrThrArgLeu---GluLysIleIleSerValIleLeuIlePheIleCysTy 259831 : CCTCCACGACCAGACTC---GAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTA : 259884 57 : rSerLeuIlePheAlaSerLeuIleProSerSerLeuPheTrpValPhe<->LysGly : 74 |||| !|||.!.!.!!!!|||||||||!!! !||| ! !:!!.!! |||! ! rSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGlu 259885 : CAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAG : 259941 75 : ThrIleArgThrArgValArgMetPheLeuProLeuAlaTyrThrIleAlaAlaValS : 94 !:!:!: !! !!:!..!!:!:!!.!! !||||||.!!:!! !.!!!.!!.! !! SerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysI 259942 : AGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTA : 260001 95 : erLysTyrGlyIleLeuIleLeuGlyGlnAspArgIleArgHisCysValLysTyrIl : 113 !!!.||| !! |||:!:||| !! !|||! ! !||||||:!!:!!:! leAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisVa 260002 : TTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGT : 260058 114 : eGluGluAspTrpLysAsnValAlaAsnValAspAlaArgAsnMetMetArgGluSer : 132 :|||.!.||||||!:!! !:!!.!!!..! ! ! ! !!:!|||:!!||| !..!! ! lGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyr 260059 : GGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATAC : 260115 133 : AlaArgValGlyArgArgLeuValAlaIleSerIleSerPheTyrCysSerSerIleM : 152 |||!:! !!|||||| !:!!!.!||| !!!! :!!||| .!!.!!:!!: AlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValL 260116 : GCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTC : 260175 153 : etSerValArgLeuIleProLeuLeuTyrLeuGlyLysIle<->ValAspGlnTyrAs : 170 !!!!! !! !!|||:!! !!:!!||| ! !! ! !||| |||! .!. ! !. euCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluTh 260176 : TGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGAC : 260232 171 : nValThrIleArgLeuLeuProThrProAlaTyrLeuPheSerLeuAspValGlnAla : 189 . !! !:!!!.!||||||||| ! !!!.!||| ! !:!!:!!|||.!.! ! rArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAsp 260233 : GAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGAC : 260289 190 : ThrProValTyrGluIleMetTyrSerLeuGlnGlyAlaTyrGlyIleValThrAlaS : 209 !:!|||:!! !!||||||:!: ! !:!!||| !!.!! |||.!!:!!..! !| SerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnS 260290 : AGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATT : 260349 210 : erIleSerThrGlyGlyIleGlyLeuIleThrIlePheValMetHisAlaCysGlyGl : 228 ||! !!!!..!||| !.!!.!!||| .!!:!!.!...! |||||||||||||| erSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGl 260350 : CGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCA : 260406 229 : nLeuLysIleLeuMetAsnLeuMetSerGluPheSerGluAspLeuGlnGlnLysGlu : 247 ||||!!.:!:||||||.!.! !!!:!!!|||||| !!!:!!:! !::!.!.!:!:!! nLeuAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLys 260407 : GTTGAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAG : 260463 vulgar: CbirOr7 17 247 . KQ414889.1 259772 260465 + 232 M 25 75 G 1 0 M 29 87 G 0 3 M 93 279 G 0 3 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259773 260465 232 + . gene_id 12 ; sequence CbirOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259773 260465 . + . KQ414889.1 exonerate:protein2genome:local exon 259773 260465 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 259773 260465 232 + . alignment_id 12 ; Query CbirOr7 ; Align 259773 18 75 ; Align 259848 44 87 ; Align 259938 73 279 ; Align 260220 166 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 214 Query range: 25 -> 247 Target range: 278600 -> 279278 26 : IleLeuAsnAlaLeuGlyIleTrpProSerLeuGlyLysArgLysSerIleCysLysA : 45 .!!|||!!. !!:!!|||:!!|||||| |||.!! !! !!!!! !! :!!! PheLeuLysProIleGlyValTrpPro---LeuSerLeuCysValThrThrLeuGluL 278601 : TTTCTCAAACCGATTGGCGTATGGCCT---CTCAGTCTCTGCGTGACCACCTTGGAAA : 278655 46 : rgLeuValAspTyrLeuLeuIlePheLeuSerTyrSerLeuIlePheAlaSerLeuIl : 64 :!:!! !..! :!!||| !!.:!!|||! !! !|||||| ! ! !|||:! ysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuVa 278656 : AGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGT : 278712 65 : eProSerSerLeuPheTrpValPhe<-><->LysGlyThrIleArgThrArgValArg : 81 !|||!!!:!!|||! ! |||.!! ! ||| !:!! !|||!:!:!!!:! lProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLys 278713 : ACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAA : 278769 82 : MetPheLeuProLeuAlaTyrThrIleAlaAlaValSerLysTyrGlyIleLeuIleL : 101 |||.!! !||||||::!!:! !! !|||..!! !|||||| !||||||!!:! MetIleGlyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetS 278770 : ATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGT : 278829 102 : euGlyGlnAspArgIleArgHisCysValLysTyrIleGluGluAspTrpLys<-><- : 119 ! !! ! !!:!||| !! ! ||||||!!. !!|||... !||||||... erArgGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuTh 278830 : CGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTAC : 278886 120 : ><->AsnValAlaAsnValAspAlaArgAsnMetMetArgGluSerAlaArgValGly : 136 ::: ! ... ::: |||...:::||||||!!:|||||||||:!!||| rLeuSerTyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGly 278887 : ACTTTCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGA : 278943 137 : ArgArgLeuValAlaIleSerIleSerPheTyrCysSerSerIleMetSerValArgL : 156 ||| !|||!.! !.!!||| !.!!||| ! !|||.!! !:!:! ! !! ! ArgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrA 278944 : CGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCG : 279003 157 : euIleProLeuLeuTyrLeuGlyLysIleValAspGlnTyrAsnValThrIleArgLe : 175 !:!: !! !|||!:! !! !:::! ! ! ! !!|||! !|||:!:|||! laValMetProLeuPheAlaValArgThrGluIleIleAspAsnGluThrValArgSe 279004 : CCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATC : 279060 176 : uLeuProThrProAlaTyrLeuPheSerLeuAspValGlnAlaThrProValTyrGlu : 194 !! ! !! !||| !|||! ! ! !|||||| !!::.!!!:!||| !!:!||| rGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGlu 279061 : TCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAG : 279117 195 : IleMetTyrSerLeuGlnGlyAlaTyrGlyIleValThrAlaSerIleSerThrGlyG : 214 |||:!! ! ! !:!!||| !! ! !!.!.!!||| ! !|||:!!!!!..!|||! IleValGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyA 279118 : ATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAG : 279177 215 : lyIleGlyLeuIleThrIlePheValMetHisAlaCysGlyGlnLeuLysIleLeuMe : 233 .! !.!!||||||.!!:!:||||||||||||!.!|||||||||!!!!:!||||||:! laCysSerLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuVa 279178 : CTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGT : 279234 234 : tAsnLeuMetSerGluPheSerGluAspLeuGlnGlnLysGlu : 247 !!.. !:!!..!:!!.!!! !!!:! :!!:!! !!:!:!! lThrLysLeuAspLysLeuIleAspGlyValLysGlyArgLys 279235 : GACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGGAGGAAG : 279278 vulgar: CbirOr7 25 247 . KQ414889.1 278600 279278 + 214 M 9 27 G 1 0 M 37 111 G 0 6 M 46 138 G 0 9 M 129 387 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278601 279278 214 + . gene_id 13 ; sequence CbirOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278601 279278 . + . KQ414889.1 exonerate:protein2genome:local exon 278601 279278 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278601 279278 214 + . alignment_id 13 ; Query CbirOr7 ; Align 278601 26 27 ; Align 278628 36 111 ; Align 278745 73 138 ; Align 278892 119 387 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 210 Query range: 25 -> 247 Target range: 284547 -> 286228 26 : IleLeuAsnAlaLeuGlyIleTrpProSerLeuGlyLysArgLysSerIleCysLysA : 45 .!!|||!!. !!:!!|||:!!|||||| |||.!! !! !!!!! !! :!!! PheLeuLysProIleGlyValTrpPro---LeuSerLeuCysValThrThrLeuGluL 284548 : TTTCTCAAACCGATTGGCGTATGGCCT---CTCAGTCTCTGCGTGACCACCTTGGAAA : 284602 46 : rgLeuValAspTyrLeuLeuIlePheLeuSerTyrSerLeuIlePheAlaSerLeuIl : 64 :!:!! !..! :!!||| !!.:!!|||! !! !|||||| ! ! !|||:! ysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuVa 284603 : AGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGT : 284659 65 : eProSerSerLeuPheTrpValPhe<-><->LysGlyThrIleArgThrArgValArg : 81 !|||!!!:!!|||! ! |||.!! ! ||| !:!! !|||!:!:!!!:! lProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLys 284660 : ACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAA : 284716 82 : MetPheLeuProLeuAlaTyrThrIleAlaAlaValSerLysTyrGlyIleLeuIleL : 101 |||.!! !||||||::!!:! !!!: !|||!.!! !|||||| !|||||||||! MetIleGlyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleS 284717 : ATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTT : 284776 102 : euGlyGlnAspArgIleArgHisCysValLysTyrIleGluGluAsp{Tr} >>>> : 117 ! !! ! !!:!||| !!!!.||||||||| !!|||...! !|||{||} erArgGlyGlyLysIleGlyGlnCysValLysAspIleArgAlaAsp{Tr}++ 284777 : CGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGAC{TG}gt..... : 284828 118 : Target Intron 1 >>>> {p}LysAsnValAlaAsnValAspAlaArgAsnMet : 128 1012 bp {|} ::: !:::... ::: |||...::: +-{p}LeuSerHisSerGlnGluGluGluArgGluIle 284829 : ....................ac{G}CTTTCGCATAGtcaagaagaggagagagagatc : 285869 129 : MetArgGluSerAlaArgValGlyArgArgLeuValAlaIleSerIleSerPheTyrC : 148 ||||||!!:|||||||||:!!|||||| !|||!.! !.!!!!! !.!!||| ! MetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetT 285870 : aTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGT : 285929 149 : ysSerSerIleMetSerValArgLeuIleProLeuLeuTyrLeuGlyLysIleValAs : 167 !|||.!! !.!.! ! !! ! !:!: !! !|||! ! !! !:::! ! ! yrSerGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIl 285930 : ATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGAT : 285986 168 : pGlnTyrAsnValThrIleArgLeuLeuProThrProAlaTyrLeuPheSerLeuAsp : 186 ! !!|||! !|||:!:|||! !! ! !! !||| !|||! ! ! !|||||| eIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAsp 285987 : CATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGAT : 286043 187 : ValGlnAlaThrProValTyrGluIleMetTyrSerLeuGlnGlyAlaTyrGlyIleV : 206 !!::.!!!:!||| !!:!||||||:!! ! ! !:!!||| !! ! !!.!.!!| ProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheV 286044 : CCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCG : 286103 207 : alThrAlaSerIleSerThrGlyGlyIleGlyLeuIleThrIlePheValMetHisAl : 225 ||! ! !|||:!!!!!..!|||!.! !.!!||| !.!!:!:||||||||||||!. alIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisVa 286104 : TTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGT : 286160 226 : aCysGlyGlnLeuLysIleLeuMetAsnLeuMetSerGluPheSerGluAspLeuGln : 244 !|||||||||!!!!:!||||||:!!!.. !:!!..!:!!.!! !!!:! :!!:!! lCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLys 286161 : CTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAA : 286217 245 : GlnLysGlu : 247 !!:!:!! GlyArgLys 286218 : GGGAGGAAG : 286228 vulgar: CbirOr7 25 247 . KQ414889.1 284547 286228 + 210 M 9 27 G 1 0 M 37 111 G 0 6 M 44 132 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 130 390 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284548 286228 210 + . gene_id 14 ; sequence CbirOr7 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284548 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284548 284825 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286228 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286228 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284548 286228 210 + . alignment_id 14 ; Query CbirOr7 ; Align 284548 26 27 ; Align 284575 36 111 ; Align 284692 73 132 ; Align 285839 118 390 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 194 Query range: 293 -> 399 Target range: 234794 -> 235254 294 : CysIleLeuThrGluPheGluAsnSerAsnSerMetValIleIlePhePheThrIleS : 313 ||||||||||||... |||!!.|||...... ::: !! !:!..!||| CysIleLeuThrSerGlnGluLysSerLysGluLys---LeuAlaSerTyrValIleV 234795 : TGTATTTTAACTTCTCAGGAAAAgtcgaaggaaaaa---ttagCTTCATACGTCATCG : 234849 314 : erTyrCysThrAlaThrIleSerValPheIlePheCysTyrValGlyAsnGlnLeuIl : 332 !||| :!! !|||.!.::::::|||||||||||||||:!!|||.!. !|||! alTyrValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuTh 234850 : TGTACGTGTCCATGACATTtaatatattcatattttgttACATCGGAGAGACGCTTAC : 234906 333 : eLeuGln >>>> Target Intron 1 >>>> AlaGluLysValAlaLeuMetS : 342 ! !||| 74 bp ..! ||||||!.! !! rGluGln++ ++CysThrLysValGlyGluLysV 234907 : AGAGCAGgt.........................agTGTACCAAAGTCGGAGAAAAAG : 235010 343 : erTyrGluLeuGluTrpTyrArgLeuProAspArgLysAlaArgGlnLeuLeuLeuVa : 361 !||| ! !|||||||||||||||||| !!!:!! |||! ! |||:!!:!!:! alTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIl 235011 : TGTACATGACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGAT : 235067 362 : lMetIleMetSerAsnLysProMetThrIleThrAlaGlyAsnPheLeuAspLeuSer : 380 !!!: !! !|||!:!! ! !!!:! !||||||||||||!!.||||||.!.:!!||| eIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheLeuGlnMetSer 235068 : CATCTCCAGGTCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCT : 235124 381 : LeuLysThrPheCysAsp >>>> Target Intron 2 >>>> IleMetLysTh : 390 :!! !|||||| !!||| 71 bp :!!.!.|||.! ValAlaThrPheGlyAsp++ ++ValPheLysAl 235125 : GTCGCAACATTTGGCGATgt.........................agGTATTTAAGGC : 235225 391 : rSerPheAlaTyrLeuAsnMetLeuArg : 399 !||||||||||||!!!||||||:!!||| aSerPheAlaTyrPheAsnMetIleArg 235226 : GTCTTTCGCCTACTTCAACATGATCCGC : 235254 vulgar: CbirOr7 293 399 . KQ414889.1 234794 235254 + 194 M 12 36 G 1 0 M 28 84 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234795 235254 194 + . gene_id 15 ; sequence CbirOr7 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234795 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234795 234914 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235144 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235144 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 235145 235146 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 235145 235215 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 235214 235215 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 235216 235254 . + . KQ414889.1 exonerate:protein2genome:local exon 235216 235254 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234795 235254 194 + . alignment_id 15 ; Query CbirOr7 ; Align 234795 294 36 ; Align 234831 307 84 ; Align 234989 335 156 ; Align 235216 387 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 188 Query range: 288 -> 387 Target range: 214602 -> 215022 289 : SerIleGlnSerTyrCysIleLeuThrGluPheGluAsnSerAsnSerMetValIleI : 308 :::||| ...::: |||||| |||!::.!.:::!:!|||! !! ..!! !: AsnIleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrV 214603 : aacatcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAG : 214660 309 : lePhePheThrIleSerTyrCysThrAlaThrIleSerValPheIlePheCysTyrVa : 327 !! !!:!..!:!:! !||| !:!! |||...::::::|||||||||||||||:! alThrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIl 214661 : TAACTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCAT : 214717 328 : lGlyAsnGlnLeuIleLeuGln >>>> Target Intron 1 >>>> AlaGluL : 337 !|||.!.! :!! ! !||| 123 bp ..!:!!| eGlyGluLeuValSerGluGln++ ++CysLysL 214718 : AGGCGAGCTTGTGTCTGAACAGgt.........................agTGCAAAA : 214870 338 : ysValAlaLeuMetSerTyrGluLeuGluTrpTyrArgLeuProAspArgLysAlaAr : 356 |||||!.! !:!:|||||| !:!!||||||||||||||||||! !!.!||| !! ysValGlyGluValSerTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLe 214871 : AGGTCGGAGAAGTATCGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGCT : 214927 357 : gGlnLeuLeuLeuValMetIleMetSerAsnLysProMetThrIleThrAlaGlyAsn : 375 ! ! !:!!|||:!!||| !|||||||||..! !!:!:! !.!!|||||||||||| uCysCysIleLeuIleMetAlaMetSerAsnSerSerValLysPheThrAlaGlyAsn 214928 : CTGTTGCATTTTGATCATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAAC : 214984 376 : PheLeuAspLeuSerLeuLysThrPheCysAspIle : 387 .!.:!!!!:||||||:!!!..|||||| !!..!:!! MetValGluLeuSerIleSerThrPheSerSerVal 214985 : ATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215022 vulgar: CbirOr7 288 387 . KQ414889.1 214602 215022 + 188 M 46 138 5 0 2 I 0 119 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214603 215022 188 + . gene_id 16 ; sequence CbirOr7 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214603 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214603 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214603 215022 188 + . alignment_id 16 ; Query CbirOr7 ; Align 214603 289 138 ; Align 214864 335 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 336 -> 399 Target range: 280282 -> 280542 337 : LysValAlaLeuMetSerTyrGluLeuGluTrpTyrArgLeuProAspArgLysAlaA : 356 ||||||!.!:!! !!!||| !:!!!!:|||||||||||||||! !:!||||||! LysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaG 280283 : AAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCAC : 280340 357 : rgGlnLeuLeuLeuValMetIleMetSerAsnLysProMetThrIleThrAlaGlyAs : 375 :! |||:!!|||:!!.!. !:!!||||||... !!!!:! !:!!|||||||||!! lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 280341 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 280397 376 : nPheLeuAspLeuSerLeuLysThrPheCysAsp >>>> Target Intron 1 > : 387 ..!!:!!||||||||||||!..!:!||||||..! 71 bp sIleIleAspLeuSerLeuSerSerPheCysSer++ 280398 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt...................... : 280435 388 : >>> IleMetLysThrSerPheAlaTyrLeuAsnMetLeuArg : 399 :!::!:||||||:!!||||||||||||!:!:!:|||||| ++ValLeuLysThrAlaPheAlaTyrLeuSerLeuLeuArg 280436 : ...agGTGTTAAAAACGGCATTCGCATATCTGAGCTTATTACGT : 280542 vulgar: CbirOr7 336 399 . KQ414889.1 280282 280542 + 177 M 50 150 5 0 2 I 0 67 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280283 280542 177 + . gene_id 17 ; sequence CbirOr7 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280283 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280283 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280542 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280542 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280283 280542 177 + . alignment_id 17 ; Query CbirOr7 ; Align 280283 337 150 ; Align 280504 387 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 336 -> 400 Target range: 287069 -> 287261 337 : LysValAlaLeuMetSerTyrGluLeuGluTrpTyrArgLeuProAspArgLysAlaA : 356 ||||||!.!||| !!!||| !:!!!!:|||||||||||||||! !:!! !|||! LysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaG 287070 : AAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTC : 287127 357 : rgGlnLeuLeuLeuValMetIleMetSerAsnLysProMetThrIleThrAlaGlyAs : 375 :! |||:!!|||:!!.!. !:!!||||||... !!!!:! !:!!|||||||||!! lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 287128 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 287184 376 : nPheLeuAspLeuSerLeuLysThrPheCysAspIleMetLysThrSerPheAlaTyr : 394 ..!!:!!||||||||||||!..!:!||||||..!:!:! ! ! !!:!!!.:!!||| sIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 287185 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 287241 395 : LeuAsnMetLeuArgAsn : 400 ! !:!!:!!! ||| TyrHisLeuTyrAspAsn 287242 : TATCATTTGTacgataat : 287261 vulgar: CbirOr7 336 400 . KQ414889.1 287069 287261 + 146 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287070 287261 146 + . gene_id 18 ; sequence CbirOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287070 287261 . + . KQ414889.1 exonerate:protein2genome:local exon 287070 287261 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287070 287261 146 + . alignment_id 18 ; Query CbirOr7 ; Align 287070 337 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 332 -> 396 Target range: 230241 -> 230433 333 : LeuGlnAlaGluLysValAlaLeuMetSerTyrGluLeuGluTrpTyrArgLeuProA : 352 ||||||..!..!||||||!.! !! !|||||| !:!!||||||||||||||| !!! LeuGlnCysArgLysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrG 230242 : TTACAGTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCG : 230299 353 : spArgLysAlaArgGlnLeuLeuLeuValMetIleMetSerAsnLysProMetThrIl : 371 !.!||| !! ! ! !:!!|||:!!!!: !||||||||| !!! !! !.! lyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPh 230300 : GAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATT : 230356 372 : eThrAlaGlyAsnPheLeuAspLeuSerLeuLysThrPheCysAspIleMetLysThr : 390 !||||||||||||.!.:!!!!:||||||:!!!!.|||||| !!|||:!!! ! ! ! eThrAlaGlyAsnMetValGluLeuSerValAsnThrPheSerAspValSerIleIle 230357 : TACAGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGACGTAAGTATCATA : 230413 391 : SerPheAlaTyrLeuAsn : 396 ! !! !!.!||| !||| PheSerValTyrThrAsn 230414 : TTCTCTGTTTACACGAAT : 230433 vulgar: CbirOr7 332 396 . KQ414889.1 230241 230433 + 126 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230242 230433 126 + . gene_id 19 ; sequence CbirOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230242 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230242 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230242 230433 126 + . alignment_id 19 ; Query CbirOr7 ; Align 230242 333 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 334 -> 387 Target range: 219512 -> 219671 335 : AlaGluLysValAlaLeuMetSerTyrGluLeuGluTrpTyrArgLeuProAspArgL : 354 ......|||:::... ||||||||| !:!!||||||||||||||| !!! !:!| CysArgLysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysL 219513 : TGtaggaaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGA : 219570 355 : ysAlaArgGlnLeuLeuLeuValMetIleMetSerAsnLysProMetThrIleThrAl : 373 || !! ! ! !:!!|||..!!!: !|||||||||... !!!!:! !:!:||||| ysLysLeuTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAl 219571 : AAAAGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGC : 219627 374 : aGlyAsnPheLeuAspLeuSerLeuLysThrPheCysAspIle : 387 |||||||.!.:!!!!:||||||:!!!..|||||| !|||:!: aGlyAsnMetValGluLeuSerIleSerThrPheThrAspVal 219628 : CGGAAATATGGTCGAATTGTCTATCAGCACTTTTACCGACGTG : 219671 vulgar: CbirOr7 334 387 . KQ414889.1 219512 219671 + 125 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219513 219671 125 + . gene_id 20 ; sequence CbirOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219513 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219513 219671 125 + . alignment_id 20 ; Query CbirOr7 ; Align 219513 335 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 973 Query range: 5 -> 398 Target range: 256634 -> 258729 6 : IleLysAspLeuHisAspTyrSerValGlnLeuAsnArgTrpPheLeuLysProLeuG : 25 .!!|||..!! ! !|||||||||:!!|||||||||||||||||||||||||||:!!| PheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleG 256635 : TTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAG : 256692 26 : lyAlaTrpProArgSerAlaThrThrSerLysGlyGluArgAlaLeuSerTyrIleLe : 44 |||||||||||! !|||:!!:!!|||!!!! !|||||| !:!!||| !:!!|| lyAlaTrpProProSerSerSerThrThrThrLeuGluArgAsnValSerIleValLe 256693 : GCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTT : 256749 45 : uIlePheIleCysPhePheLeuIleAlaLeuThrAlaValProCysAlaLeuAsnVal : 63 |! !.!!:!!|||!:! !! !||| !!!!||| !:!!|||||| !|||:!!||| uAsnIleValCysTyrGlySerIleLeuPheThrLeuIleProCysLeuLeuHisVal 256750 : GAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTA : 256806 64 : PhePheGluGluArgAspIleValLeuLysLeuArgAlaIleGlyProLeuSerHisT : 83 |||.!!!!:!!: !..!.!! :::|||:::::: ...||||||:!!||||||| PheLeuAspAspAspSerPheTyrMetLysValLysAsnPheGlyProMetSerHisT 256807 : TTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATT : 256866 84 : rpIleMetGlyAlaMetAsnTyrCysSerLeuLeuLeuArgSerAlaAspIleArgGl : 102 |||||!!:.!!..! |||||| ! !|||||||||!:!.!! !||||||||| rpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTy 256867 : GGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTA : 256923 103 : yCysValGlnHisMetGlnArgAspTrpGlnIleIleLysHisThrArgAspArgGlu : 121 !||||||:!!|||!!::!!! !||||||::!!!::!:!:!... !!:!|||!:!:!! rCysValGluHisIleGluThrAspTrpArgMetValArgArgGluLysAspGlnGln 256924 : CTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAA : 256980 122 : IleMetAlaArgAsnAlaGlnLeuGlyArgLeuValAlaGlyPheCysAlaValPheM : 141 :!:||| !!:!||||||::!!!!||||||! !|||||| !|||||||||!.!.!!| ValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleM 256981 : GTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCA : 257040 142 : etHisGlyGlyValPheSerTyrAsnIleValCysGlyMetThrThrValValValPr : 160 ||!!..!!||||||||| ::: ::: !! !.!:!!!.!|||! !:!!:!!! etGlnSerGlyValPheCysPhePheValSerSerAlaLeuAsnThrGluIleIleHi 257041 : TGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCA : 257097 161 : oIleGlyAspAsnArgSerValGluMetIleGlnLeuProValProSerTyrSerLys : 179 !:!:|||:!!.!.! !!!!:!!! ! :!: ||||||||| !! !|||!.!||| sValGlyAsnGluThrThrIleValArgVal---LeuProValThrValTyrLysLys 257098 : CGTGGGAAACGAAACAACGATCGTGCGAGTG---CTACCTGTTACCGTGTACAAGAAG : 257151 180 : PheIleAspAlaArgPheSerProAlaAsnGluIleValLeuMetThrGlnValLeuS : 199 .!.:!::!!!.! ! ||||||.!!||||||||||||:!!.!.! !|||..!! !| LeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheMetGlnThrTrpS 257152 : CTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGT : 257211 200 : erThrPheValValAsnSerThrThrValSerAlaCysSerLeuAlaAlaValPheAl : 218 ||:!!.!!:!!!.!!.!!!!!:!||||||||| !! !|||||||||||||||||||| erSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAlaAlaValPheAl 257212 : CGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGC : 257268 219 : aMetHisAlaCysGlyGlnLeuAspIleLeuMetAlaArgLeuAsnArgLeuValGlu : 237 |! ||||||! !||||||||| !:!:||||||:!! !!:!!!....!!!!|||.!. aThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGluPheValAsn 257269 : CACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAAT : 257325 238 : GlyGluAspSerArgThrSerGluSerLeuGlnArgArgLeuAlaAsnIleValAspH : 257 ! !..! !:!||| ... !:!!:!:!!!.! ||||||!!:| GluSerArgAsnArgGluLysThrPheProPheLysGlnIleGlyValIleValGluH 257326 : GAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGC : 257385 258 : isHisLeuArgValLeu{Se} >>>> Target Intron 1 >>>> {r}PheIl : 265 |||||||||||||||||{||} 76 bp {|}||||| isHisLeuArgValLeu{Se}++ ++{r}PheIl 257386 : ATCATTTAAGAGTGCTG{AG}gt.........................ag{T}TTCAT : 257485 266 : eAlaArgIleGluAspValMetHisGlnIleCysLeuValGluLeuLeuGlyCysThr : 284 |:!! !||||||!!:||||||:!!!:!||||||!!!:!!||||||!!! !!|||||| eSerTyrIleGluGluValMetAsnArgIleCysPheLeuGluLeuPheArgCysThr 257486 : ATCATATATCGAGGAAGTGATGAACCGAATATGTTTTTTAGAGTTGTTTAGATGCACG : 257542 285 : PheAsnLeuCysMetLeuGlyTyrTyrThrIleThr >>>> Target Intron 2 : 297 .!. !:!!||||||||||||||||||! !:!!.!! 684 bp LeuAlaIleCysMetLeuGlyTyrTyrIleLeuAla++ 257543 : CTGGCTATATGCATGCTGGGATACTACATTCTTGCGgt.................... : 257583 298 : >>>> SerTrpAsnAsnIleAspIleLysGlyIleValProTyrIleIleValTyr : 313 ..!|||::!!.. ||||||:::...::: |||.!!!!::!! ! ++GluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheMetIleLeu 257584 : .....aggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTATGATACTC : 258313 314 : IleSerMetThrPheAsnIlePheThrPheCysTyrIleGlyGluIleLeuThrGlnG : 333 ||||||::::::||||||||||||......||||||||||||||||||||||||:!!| IleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluG 258314 : ATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATTAACAGAAC : 258373 334 : ln >>>> Target Intron 3 >>>> CysLysAsnIleGlyGluThrAlaTyr : 342 || 90 bp ||||||!!.:!!|||!!:..!!.!||| ln++ ++CysLysLysValGlyAspValValTyr 258374 : AGgt.........................agTGCAAGAAAGTTGGCGACGTGGTTTAT : 258490 343 : MetThrAspTrpTyrTyrLeuProHisLysThrAlaArgAsnLeuIleLeuIleIleS : 362 |||||||||||||||||||||||| !!|||! ! !! !:!!|||||||||:!!|||: MetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLeuValIleA 258491 : ATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTTGGTAATCG : 258550 363 : erArgSerAsnValValIleLysIleThrAlaGlyLysLeuValGlnLeuSerIleAl : 381 !!||||||!:!||||||:!!:!!|||||||||||||||... ...::!|||||| laArgSerSerValValValGlnIleThrAlaGlyLysPhePheHisMetSerIleTy 258551 : CACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatGTCCATTTA : 258607 382 : aThrPheSerAsp >>>> Target Intron 4 >>>> ValMetLysThrSerL : 391 !|||||||||||| 69 bp |||!!:|||||||||! rThrPheSerAsp++ ++ValIleLysThrSerP 258608 : CACATTCAGCGATgt.........................agGTAATAAAAACCTCTT : 258706 392 : euValTyrLeuAsnIleLeuArg : 398 !!!.!|||||||||:!!|||||| heAlaTyrLeuAsnLeuLeuArg 258707 : TCGCGTATTTGAATTTACTGCGT : 258729 vulgar: CbirOr21 5 398 . KQ414889.1 256634 258729 + 973 M 165 495 G 1 0 M 91 273 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256635 258729 973 + . gene_id 1 ; sequence CbirOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256635 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256635 257404 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258729 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258729 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256635 258729 973 + . alignment_id 1 ; Query CbirOr21 ; Align 256635 6 495 ; Align 257130 172 273 ; Align 257482 264 99 ; Align 258265 297 111 ; Align 258466 334 156 ; Align 258691 386 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 940 Query range: 9 -> 386 Target range: 232453 -> 235147 10 : HisAspTyrSerValGlnLeuAsnArgTrpPheLeuLysProLeuGlyAlaTrpProA : 29 :!!!!:||||||:!!|||:!!|||||||||||||||! !|||:!!||||||||||||| TyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProA 232454 : TACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGC : 232511 30 : rgSerAlaThrThrSerLysGlyGluArgAlaLeuSerTyrIleLeuIlePheIleCy : 48 || !.!! !||||||!:!!.!:!!!:! !|||:!! ! :!:|||! !.!!! !|| rgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCy 232512 : GTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTG : 232568 49 : sPhePheLeuIleAlaLeuThrAlaValProCysAlaLeuAsnValPhePheGluGlu : 67 | !! !|||!!: !! !:!! !||||||||| !||| !:!!.!.||||||!!: sHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAsp 232569 : TCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGAC : 232625 68 : ArgAspIleValLeuLysLeuArgAlaIleGlyProLeuSerHisTrpIleMetGlyA : 87 ! !..!:!!! ! !!:!:!!!:!:!!|||||||||:!!||||||!:::!:||||||! ThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyG 232626 : ACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTG : 232685 88 : laMetAsnTyrCysSerLeuLeuLeuArgSerAlaAspIleArgGlyCysValGlnHi : 106 !:!!|||||||||!!!|||||| !!:!:!! !||||||! ! !||||||:!!!! luLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGl 232686 : AATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACA : 232742 107 : sMetGlnArgAspTrpGlnIleIleLysHisThrArgAspArgGluIleMetAlaArg : 125 .:!!:!!!:!||||||!:!! !:!!||| ! !! ! !!|||!!::!:||| !!:! nValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLys 232743 : GGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAG : 232799 126 : AsnAlaGlnLeuGlyArgLeuValAlaGlyPheCysAlaValPheMetHisGlyGlyV : 145 ||||||:!!|||||||||! !:!!||| !!.!!..!||| !!! !|||||| !|||| AsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyV 232800 : AACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTG : 232859 146 : alPheSerTyrAsnIleValCysGlyMetThrThrValValValProIleGlyAspAs : 164 || !||| !!.!.|||||| |||:!: !! ! !..! !! !:!:||| || alGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGly---As 232860 : TCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGG---AA : 232913 165 : nArgSerValGluMetIleGlnLeuProValProSerTyrSerLysPheIleAspAla : 183 |..!||| !..!||| !! !|||||| ! !!! !|||!!!|||.!.!!:|||.!! nGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThr 232914 : CGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACC : 232970 184 : ArgPheSerProAlaAsnGluIleValLeuMetThrGlnValLeuSerThrPheValV : 203 ||||||||||||.!!|||||||||:!!!!!:!: !||| !|||||| !|||:!!| ArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleV 232971 : AGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCG : 233030 204 : alAsnSerThrThrValSerAlaCysSerLeuAlaAlaValPheAlaMetHisAlaCy : 222 ||||||||..!||||||.!!||||||.!!|||!.!||||||.!.|||||||||||||| alAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCy 233031 : TGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTG : 233087 223 : sGlyGlnLeuAspIleLeuMetAlaArgLeuAsnArgLeuValGluGlyGluAspSer : 241 ||||||||||:!!:!::!!|||:!!!:!|||:!! !||||||!!:!.!:!! .!! sGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLys---Gly 233088 : CGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAA---GGG : 233141 242 : ArgThrSerGluSerLeuGlnArgArgLeuAlaAsnIleValAspHisHisLeuArgV : 261 !:! !..!..! ! !||||||!:!|||!.! !||||||!!:||||||||||||. GlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgT 233142 : CAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTA : 233201 262 : alLeu{Se} >>>> Target Intron 1 >>>> {r}PheIleAlaArgIleGl : 269 .!|||{||} 1315 bp {|}|||||| !!.!||||| hrLeu{Se}++ ++{r}PheIleArgAsnIleGl 233202 : CATTA{AG}gt.........................ag{T}TTTATACGGAATATAGA : 234540 270 : uAspValMetHisGlnIleCysLeuValGluLeuLeuGlyCysThrPheAsnLeuCys : 288 |:!!||||||:!!! !||||||||||||||||||:!!|||||||||!!.|||:!!||| uAsnValMetAsnLeuIleCysLeuValGluLeuValGlyCysThrLeuAsnMetCys 234541 : GAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACGTTGAACATGTGC : 234597 289 : MetLeuGlyTyrTyrThrIleThr >>>> Target Intron 2 >>>> SerTr : 298 ||||||! !|||||| !:!!||| 189 bp ..! MetLeuGluTyrTyrLeuLeuThr++ ++GluLy 234598 : ATGCTCGAGTATTATTTACTCACGgt.........................agGAAAA : 234816 299 : pAsnAsnIleAspIleLysGlyIleValProTyrIleIleValTyrIleSerMetThr : 317 :::... ::: :::..! !!|||:!!|||||||||:!:||||||||| sSerLys---------GluLysLeuAlaSerTyrValIleValTyrValSerMetThr 234817 : gtcgaag---------gaaaaattagCTTCATACGTCATCGTGTACGTGTCCATGACA : 234864 318 : PheAsnIlePheThrPheCysTyrIleGlyGluIleLeuThrGlnGln >>>> Tar : 334 |||||||||||| ||||||||||||||||||! ||||||:!!||| PheAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGln++ 234865 : TTtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGCAGgt........ : 234917 335 : get Intron 3 >>>> CysLysAsnIleGlyGluThrAlaTyrMetThrAspTrp : 346 74 bp |||! !!.:!!||||||! !!.!|||||||||!!:||| ++CysThrLysValGlyGluLysValTyrMetThrGluTrp 234918 : .................agTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGG : 235025 347 : TyrTyrLeuProHisLysThrAlaArgAsnLeuIleLeuIleIleSerArgSerAsnV : 366 ||| ||||||||||||||||||! !..!|||:!!:!!|||||||||||||||!:!: TyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerM 235026 : TACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCA : 235085 367 : alValIleLysIleThrAlaGlyLysLeuValGlnLeuSerIleAlaThrPheSerAs : 385 !!||||||||||||||||||||||||!!!:!!|||:!!|||:!!|||||||||.!!|| etValIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAs 235086 : TGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGA : 235142 386 : pVal : 386 |||| pVal 235143 : TGTG : 235147 vulgar: CbirOr21 9 386 . KQ414889.1 232453 235147 + 940 M 153 459 G 1 0 M 76 228 G 1 0 M 22 66 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 33 99 5 0 2 I 0 185 3 0 2 M 4 12 G 3 0 M 30 90 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232454 235147 940 + . gene_id 2 ; sequence CbirOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232454 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232454 233208 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232454 235147 940 + . alignment_id 2 ; Query CbirOr21 ; Align 232454 10 459 ; Align 232913 164 228 ; Align 233141 241 66 ; Align 234525 264 99 ; Align 234813 297 12 ; Align 234825 304 90 ; Align 234989 334 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 889 Query range: 10 -> 363 Target range: 259769 -> 262015 11 : AspTyrSerValGlnLeuAsnArgTrpPheLeuLysProLeuGlyAlaTrpProArgS : 30 |||||||||:!!|||!!!|||||||||||||||||||||:!!||||||||||||! !| AspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS 259770 : GACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTT : 259827 31 : erAlaThrThrSerLysGlyGluArgAlaLeuSerTyrIleLeuIlePheIleCysPh : 49 ||:!!:!!|||!!!!:! !|||!:! !:!!||| !||||||||||||||||||!: erSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTy 259828 : CATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTA : 259884 50 : ePheLeuIleAlaLeuThrAlaValProCysAlaLeuAsnValPhePheGluGluArg : 68 ! ! !||| !:!!||| !:!!||||||!.!|||:!!:!!.!..!!|||:!!..! rSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGlu 259885 : CAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAG : 259941 69 : AspIleValLeuLysLeuArgAlaIleGlyProLeuSerHisTrpIleMetGlyAlaM : 88 ..!:!: !:!!||| !!:!!.!:!!|||||||||!!!||||||.!!:!:|||..!! SerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysI 259942 : AGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTA : 260001 89 : etAsnTyrCysSerLeuLeuLeuArgSerAlaAspIleArgGlyCysValGlnHisMe : 107 !:|||||| !!!||||||||||||.!! !||||||! !.!!||||||:!!|||:! leAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisVa 260002 : TTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGT : 260058 108 : tGlnArgAspTrpGlnIleIleLysHisThrArgAspArgGluIleMetAlaArgAsn : 126 !:!!!.!||||||::!||||||! !... !!:!|||!:!.!.:!:||| !||| !! lGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyr 260059 : GGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATAC : 260115 127 : AlaGlnLeuGlyArgLeuValAlaGlyPheCysAlaValPheMetHisGlyGlyValP : 146 |||:!!!!!||||||! !||||||!.!! !||||||!.!|||:!!!!.|||||||||. AlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValL 260116 : GCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTC : 260175 147 : heSerTyrAsnIleValCysGlyMetThrThrValValValProIleGlyAspAsnAr : 165 !.!!!!:! !:!:||| ! !:!!!:!|||! !|||:!!! !:!:|||:!!.!.! euCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluTh 260176 : TGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGAC : 260232 166 : gSerValGluMetIleGlnLeuProValProSerTyrSerLysPheIleAspAlaArg : 184 !!!!:!!! :!: |||||| ! !! !|||!.!:!!.!.|||:!!!.!!.! rArgIleValHisLeu---LeuProCysAlaValTyrLysGluLeuIleAsnValAsn 260233 : GAGGATCGTTCATCTG---TTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAAC : 260286 185 : PheSerProAlaAsnGluIleValLeuMetThrGlnValLeuSerThrPheValValA : 204 !|||||| !|||||||||||||||:!:..!||| !!:!!||| !|||:!!|||| AspSerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValA 260287 : GACAGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGA : 260346 205 : snSerThrThrValSerAlaCysSerLeuAlaAlaValPheAlaMetHisAlaCysGl : 223 |||||!:!||||||.!! !! !|||||||||||||||.!..!! ||||||||||| snSerSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGl 260347 : ATTCGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGG : 260403 224 : yGlnLeuAspIleLeuMetAlaArgLeuAsnArgLeuValGluGlyGluAspSerArg : 242 |||||||:!!:!:||||||! ! !!:!!!....!!!!|||!!:! !..! !:!||| yGlnLeuAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArg 260404 : CCAGTTGAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGG : 260460 243 : ThrSerGluSerLeuGlnArgArgLeuAlaAsnIleValAspHisHisLeuArgValL : 262 ! !!.!:!!:!!! ! !:!..!:!!!.! ||||||!!:||||||||||||!.!| LysLysLysAlaProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaL 260461 : AAGAAAAAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCAC : 260520 263 : eu{Se} >>>> Target Intron 1 >>>> {r}PheIleAlaArgIleGluAs : 270 ||{!!} 257 bp {!}||||||:!!||||||||||| eu{Th}++ ++{r}PheIleSerArgIleGluAs 260521 : TC{AC}gt.........................ag{C}TTCATATCGCGTATCGAGGA : 260801 271 : pValMetHisGlnIleCysLeuValGluLeuLeuGlyCysThrPheAsnLeuCysMet : 289 |||||||:!!!:!||||||!!!:!!||||||!!! !!||||||.!.:!!:!!|||:!: pValMetAsnArgIleCysPheLeuGluLeuPheArgCysThrLeuAspIleCysLeu 260802 : TGTGATGAACCGGATATGCTTCCTGGAGTTGTTCAGGTGCACTCTGGATATATGTCTA : 260858 290 : LeuGlyTyrTyrThrIleThr >>>> Target Intron 2 >>>> SerTrpAs : 299 ||||||||||||! !:!!! ! 852 bp ..!||| LeuGlyTyrTyrIleLeuMet++ ++GluTrpAl 260859 : CTTGGCTACTATATTCTTATGgt.........................agGAATGGGC : 261740 300 : nAsnIleAspIleLysGlyIleValProTyrIleIleValTyrIleSerMetThrPhe : 318 !.!. !||||||:!!..!:!: ! !!|||.!!!!::!! |||:!!!!: !||| aGluGlnAspIleGlnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPhe 261741 : TGAGCAAGATATACAAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTC : 261797 319 : AsnIlePheThrPheCysTyrIleGlyGluIleLeuThrGlnGln >>>> Target : 334 |||:!!|||! !.!!||||||||||||||||||||||||:!!||| 8 AsnValPheIleIleCysTyrIleGlyGluIleLeuThrGluGln++ 261798 : AATGTATTTATAATCTGTTACATCGGTGAAATACTAACGGAACAGgt........... : 261847 335 : Intron 3 >>>> CysLysAsnIleGlyGluThrAlaTyrMetThrAspTrpTyr : 347 1 bp |||..!!!.:!!|||!!:..!!.!|||||||||:!!|||||| ++CysSerLysValGlyAspValValTyrMetThrAsnTrpTyr 261848 : ..............agTGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTAT : 261965 348 : TyrLeuProHisLysThrAlaArgAsnLeuIleLeuIleIleSerArg : 363 ||||||||| !!|||!:! !! !:!!|||||||||||||||:!!||| TyrLeuProAspLysSerIleLeuAspLeuIleLeuIleIleAlaArg 261966 : TATTTACCTGATAAAAGTATCCTTGATTTGATTTTGATCATTGCACGA : 262015 vulgar: CbirOr21 10 363 . KQ414889.1 259769 262015 + 889 M 160 480 G 1 0 M 91 273 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259770 262015 889 + . gene_id 3 ; sequence CbirOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259770 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259770 260524 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262015 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262015 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259770 262015 889 + . alignment_id 3 ; Query CbirOr21 ; Align 259770 11 480 ; Align 260250 172 273 ; Align 260783 264 99 ; Align 261734 297 111 ; Align 261926 334 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 779 Query range: 10 -> 399 Target range: 217171 -> 219797 11 : AspTyrSerValGlnLeuAsnArgTrpPheLeuLysProLeuGlyAlaTrpProArgS : 30 ::: |||:!!|||! !|||||||||!!.|||||||||:!!||| !||||||!.!| AsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnS 217172 : aatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACT : 217229 31 : erAlaThrThrSerLysGlyGluArgAlaLeuSerTyrIleLeuIlePheIleCysPh : 49 || !||||||!!!!:!..!..!!:! !|||! ! ! :!::!!! ! !:!!|||!: erArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTy 217230 : CACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTA : 217286 50 : ePheLeuIleAlaLeuThrAlaValProCysAlaLeuAsnValPhePheGluGluArg : 68 ! !||||||::!!!! ! !|||||||||:!!:!! !!||||||.!!|||! ..! rGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeuGluValGlu 217287 : CGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAA : 217343 69 : AspIleValLeuLysLeuArgAlaIleGlyProLeuSerHisTrpIleMetGlyAlaM : 88 |||:!! ! !||||||!:! !.!!|||||||||! ! !!! :!:|||!.! !: AspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValMetAlaPheV 217344 : GATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCG : 217403 89 : etAsnTyrCysSerLeuLeuLeuArgSerAlaAspIleArgGlyCysValGlnHisMe : 107 !:!!.|||! !||||||:!!:!!!.!!.!||||||||||||! !||||||::!...!! alLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCysValArgArgIl 217404 : TCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAAT : 217460 108 : tGlnArgAspTrpGlnIleIleLysHisThrArgAspArgGluIleMetAlaArgAsn : 126 ::!!|||||||||::!! !:!!!:! ! !!:!||||||||| ||| ! !||| eGluArgAspTrpArgAsnValArgCysGluLysAspArgGluAlaMetIleValAsn 217461 : CGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAAC : 217517 127 : AlaGlnLeuGlyArgLeuValAlaGlyPheCysAlaValPheMetHisGlyGlyValP : 146 |||.!.!!!|||||| !:!!!.! !.!!|||.!! !!||||||:!!.!!||| AlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheV 217518 : GCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcg : 217577 147 : heSerTyrAsnIleValCysGlyMetThrThrValValValProIleGlyAspAsnAr : 165 ||| |||!.! !!!:!:!..!! ! !:!! :!!..!!!:||| ! alPheTyrTyrIleAlaIleProIleSerValGlyArgIle---LeuSerGluAsnGl 217578 : ttttttattacatCGCTATACCGATCAGCGTGGGGAGAATT---CTATCGGAGAATGG : 217631 166 : gSerValGluMetIleGlnLeuProValProSerTyrSerLysPheIleAspAlaArg : 184 !!:!:!! .!.|||! !||| ! !!|||! ! !.! ! .!!||||||.!!||| yAsnLeuThrPheIleProLeuValPheProPheThrLysTyrIleIleAspThrArg 217632 : AAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGT : 217688 185 : PheSerProAlaAsnGluIleValLeuMetThrGlnValLeuSerThrPheValValA : 204 !:!!!!|||.!!||||||||||||!!!.!. !|||:!!:!!:!! ! !:!!:!!: TyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetH 217689 : TACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGC : 217748 205 : snSerThrThrValSerAlaCysSerLeuAlaAlaValPheAlaMetHisAlaCysGl : 223 !!.!!! !||| !:!!||||||||||||||||||!.!||||||:!:||||||||||| isGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGl 217749 : ACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGG : 217805 224 : yGlnLeuAspIleLeuMetAlaArgLeuAsnArgLeuValGluGlyGluAspSerArg : 242 ||||:!!!!::!:|||||| ! !!|||.!.!.!|||:!!!!:|||..! :!! ! yGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArg---AlaAsp 217806 : CCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGA---GCGGAT : 217859 243 : ThrSerGluSerLeuGlnArgArgLeuAlaAsnIleValAspHisHisLeuArgValL : 262 ! !|||!!:!!!:!!.!. !!|||:!!|||!:!||||||..!!!.|||:!!|||:!!| MetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnHisValArgIleL 217860 : ATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGATAT : 217919 263 : eu{Se} >>>> Target Intron 1 >>>> {r}PheIleAlaArgIleGluAs : 270 ||{!.} 1229 bp {!}|||:::.!!! !! !||| eu{Ly}++ ++{s}PheLeuThrLeuThrGluAr 217920 : TA{AA}gt.........................ag{a}tttttgaCGCTCACAGAGAG : 219172 271 : pValMetHisGlnIleCysLeuValGluLeuLeuGlyCysThrPheAsnLeuCysMet : 289 ..!:!:!!.||||||! !!!!!.!|||!!!||||||||||||.!.:!!:!!|||:!: gThrLeuGlnGlnIleSerPheAlaGluPheLeuGlyCysThrMetAspIleCysLeu 219173 : AACCCTCCAGCAAATCTCTTTCGCTGAATTTCTAGGATGCACCATGGACATATGTCTC : 219229 290 : LeuGlyTyrTyrThrIleThr >>>> Target Intron 2 >>>> SerTrpAs : 299 :!!|||||||||! !|||..! 76 bp ..!|||!! ValGlyTyrTyrIleIleVal++ ++GluTrpLy 219230 : GTTGGATATTACATTATCGTGgt.........................agGAATGGAA : 219335 300 : nAsnIleAspIleLysGlyIleValProTyrIleIleValTyrIleSerMetThrPhe : 318 .:::! !|||:!!! !.!! !||| !!|||||||||:!! !||||||:!:|||||| sSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerLeuThrPhe 219336 : ATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCCTcactttc : 219392 319 : AsnIlePheThrPheCysTyrIleGlyGluIleLeuThrGlnGln >>>> Target : 334 ||||||||| |||||||||||||||||||||:!!.!!:!!||| 7 AsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln++ 219393 : aacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAggt........... : 219442 335 : Intron 3 >>>> CysLysAsnIleGlyGluThrAlaTyrMetThrAspTrpTyr : 347 3 bp |||:::...||||||||| :!!||||||! !!!:|||||| ++CysArgLysIleGlyGluMetSerTyrMetIleGluTrpTyr 219443 : ..............agTGtaggaaaattggagaaatgtCGTACATGATCGAATGGTAC : 219552 348 : TyrLeuProHisLysThrAlaArgAsnLeuIleLeuIleIleSerArgSerAsnValV : 367 ||| !! |||! ! !! ! !:!!|||! !|||:!!! !|||||| ! ArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaMetSerAsnSerS 219553 : CGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCT : 219612 368 : alIleLysIleThrAlaGlyLysLeuValGlnLeuSerIleAlaThrPheSerAsp : 386 !||||||:!:|||||||||!!.:!!|||:!!|||||||||::!||||||!!!||| erIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPheThrAsp++ 219613 : CGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCACTTTTACCGACgt : 219669 387 : >>>> Target Intron 4 >>>> ValMetLysThrSerLeuValTyrLeuAsnI : 396 87 bp |||:!:||||||:!!:!!..!!:!||||||: ++ValValLysThrAlaValThrPheLeuAsnV 219670 : .........................agGTCGTTAAGACTGCAGTCACGTTTCTGAATG : 219786 397 : leLeuArgThr : 399 !!||||||||| alLeuArgThr 219787 : TACTACGAACA : 219797 vulgar: CbirOr21 10 399 . KQ414889.1 217171 219797 + 779 M 149 447 G 1 0 M 79 237 G 1 0 M 22 66 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 37 111 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 83 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217172 219797 779 + . gene_id 4 ; sequence CbirOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217172 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217172 217923 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219668 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219668 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219669 219670 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219669 219755 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 219754 219755 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219756 219797 . + . KQ414889.1 exonerate:protein2genome:local exon 219756 219797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217172 219797 779 + . alignment_id 4 ; Query CbirOr21 ; Align 217172 11 447 ; Align 217619 161 237 ; Align 217856 241 66 ; Align 219154 264 99 ; Align 219329 297 111 ; Align 219513 334 156 ; Align 219756 386 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 735 Query range: 0 -> 296 Target range: 266604 -> 267558 1 : MetCysGlnSerValIleLysAspLeuHisAspTyrSerValGlnLeuAsnArgTrpP : 20 :!: !:!!:!! !:!!!!...!||| !|||||||||:!!|||||||||||||||| ValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpP 266605 : GTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCCTGCAATTGAATCGATGGT : 266662 21 : heLeuLysProLeuGlyAlaTrpProArgSerAlaThrThrSerLysGlyGluArgAl : 39 |||||||||||:!!||||||||||||! !! !:!! !||||||||| !|||||| heLeuLysProIleGlyAlaTrpProProLeuSerLeuThrSerLysLeuGluArgIl 266663 : TCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCACATCTAAACTCGAACGAAT : 266719 40 : aLeuSerTyrIleLeuIlePheIleCysPhePheLeuIleAlaLeuThrAlaValPro : 58 !:!!|||||| !|||||| !!||||||!:!! !! !||| !!!!|||!.!:!!||| eValSerTyrAlaLeuIleValIleCysTyrCysSerIleLeuPheThrValIlePro 266720 : CGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATACTGTTCACCGTAATCCCT : 266776 59 : CysAlaLeuAsnValPhePheGluGluArgAspIleValLeuLysLeuArgAlaIleG : 78 ||| !!!!:!!:!! !!.!.|||!!:..!..!||| ! !|||:!!!:!!.!.!!| CysLeuPheHisLeuValLeuGluAspGluSerIleArgThrLysValLysValPheG 266777 : TGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTACGAAAGTGAAGGTGTTCG : 266836 79 : lyProLeuSerHisTrpIleMetGlyAlaMetAsnTyrCysSerLeuLeuLeuArgSe : 97 |||||||||||||||||.!!:!:|||!.!!!:|||||| !!!!|||||||||||||| lyProLeuSerHisTrpPheValGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSe 266837 : GTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACACCACACTGTTGCTACGCAG : 266893 98 : rAlaAspIleArgGlyCysValGlnHisMetGlnArgAspTrpGlnIleIleLysHis : 116 | !!!:|||||||||||||||:!!|||||||||! !||||||::!|||:!:! ... rLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArg 266894 : CAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGATTGGAGGATCGTGACCAGA : 266950 117 : ThrArgAspArgGluIleMetAlaArgAsnAlaGlnLeuGlyArgLeuValAlaGlyP : 136 !!..!|||!:!:!!:!:||| !!:!||||||::!:!!||||||! !:!!||| !| ProGluAspLysGlnValMetLeuLysAsnAlaArgIleGlyArgTyrIleAlaIleP 266951 : CCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCGGTCGTTACATTGCTATAT : 267010 137 : heCysAlaValPheMetHisGlyGlyValPheSerTyrAsnIleValCysGlyMetTh : 155 ||||||||!.!||||||!!. !!||||||.!!.!!||| !:!::!! !.!.!.|| heCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCysValIleThrAlaPheTh 267011 : TCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGTGATAACGGCGTTCAC : 267067 156 : rThrValValValProIleGlyAspAsnArgSerValGluMetIleGlnLeuProVal : 174 |! ! !..!||| !:!!|||:!!.!.! !!!!:!!! ! :!: |||||| ! rMetGlnThrValGluValGlyAsnGluThrArgIleValHisLeu---LeuProCys 267068 : TATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTACATCTG---TTGCCCTGT : 267121 175 : ProSerTyrSerLysPheIleAspAlaArgPheSerProAlaAsnGluIleValLeuM : 194 !! !|||!.!|||.!.|||! !.! ! !||||||.!!|||||||||||||||: AlaValTyrLysLysMetIleAlaValAspThrSerProThrAsnGluIleValLeuV 267122 : GCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGAACGAGATTGTCCTTG : 267181 195 : etThrGlnValLeuSerThrPheValValAsnSerThrThrValSerAlaCysSerLe : 213 !::!!||| !!:!!||| !|||:!!|||||||||!:!..!|||.!!|||! !||||| alSerGlnPheValSerGlyPheIleValAsnSerSerValValGlyAlaPheSerLe 267182 : TTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCGGTGCTTTCAGCCT : 267238 214 : uAlaAlaValPheAlaMetHisAlaCysGlyGlnLeuAspIleLeuMetAlaArgLeu : 232 |||||||||||||||| ||||||||||||||||||..!:!:|||||| ! !!:!! uAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerValLeuMetMetTrpIle 267239 : TGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTGATGATGTGGATC : 267295 233 : AsnArgLeuValGluGlyGluAspSerArgThrSerGluSerLeuGlnArgArgLeuA : 252 !!...!!!!|||.!. !!... ..!!!!!.!!.!.!. !! ! !!:!:!!! LysGluPheValAsnArgSerArgAspSerAsnLysAsnValCysPheAspLysIleG 267296 : AAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTTGCTTCGATAAGATTG : 267355 253 : laAsnIleValAspHisHisLeuArgValLeu{Se} >>>> Target Intron 1 : 263 .! :!!|||!!:||||||||||||||||||{||} 69 bp lyValValValGluHisHisLeuArgValLeu{Se}++ 267356 : GCGTGGTCGTTGAACATCATCTGAGAGTTTTG{AG}gt.................... : 267392 264 : >>>> {r}PheIleAlaArgIleGluAspValMetHisGlnIleCysLeuValGlu : 279 {|}||||||||||||||||||..!|||||| !:!!||||||!!!:!!||| ++{r}PheIleAlaArgIleGluSerValMetSerGluIleCysPheMetGlu 267393 : .....ag{C}TTCATAGCACGTATCGAAAGTGTAATGAGCGAAATTTGCTTCATGGAG : 267505 280 : LeuLeuGlyCysThrPheAsnLeuCysMetLeuGlyTyrTyrThrIleThr : 296 |||!!! !||||||.!.:!!:!!|||:!!|||.!!||||||! !:!!||| LeuPheLysCysThrMetAspIleCysValLeuSerTyrTyrIleLeuThr 267506 : TTGTTCAAGTGTACTATGGATATATGCGTGCTTAGCTATTATATCCTTACG : 267558 vulgar: CbirOr21 0 296 . KQ414889.1 266604 267558 + 735 M 170 510 G 1 0 M 91 273 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266605 267558 735 + . gene_id 5 ; sequence CbirOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266605 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266605 267389 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267558 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267558 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266605 267558 735 + . alignment_id 5 ; Query CbirOr21 ; Align 266605 1 510 ; Align 267115 172 273 ; Align 267460 264 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 735 Query range: 7 -> 296 Target range: 274371 -> 275309 8 : AspLeuHisAspTyrSerValGlnLeuAsnArgTrpPheLeuLysProLeuGlyAlaT : 27 ..!||| !|||||||||:!!|||||||||||||||||||||||||||:!!||||||| SerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaT 274372 : AGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGT : 274429 28 : rpProArgSerAlaThrThrSerLysGlyGluArgAlaLeuSerTyrIleLeuIlePh : 46 ||||| !:!!:!! !!|||!!!||| !|||||| !||||||:!!:::|||||||| rpProLeuAlaSerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePh 274430 : GGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatctt : 274486 47 : eIleCysPhePheLeuIleAlaLeuThrAlaValProCysAlaLeuAsnValPhePhe : 65 |:::|||::!! !!!!||| !! !|||!.!:!!||| !! !!!!:!!:!!.!..!. eLeuCysTyrCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeu 274487 : cctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTA : 274543 66 : GluGluArgAspIleValLeuLysLeuArgAlaIleGlyProLeuSerHisTrpIleM : 85 ! !!!:..!..!:!! !|||||||||!:! !:!!|||||||||.!!||||||.!!! ValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheI 274544 : GTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCA : 274603 86 : etGlyAlaMetAsnTyrCysSerLeuLeuLeuArgSerAlaAspIleArgGlyCysVa : 104 !:|||!.!!!:|||||| !!!!||||||||||||||| !!!:|||||||||||||| leGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysVa 274604 : TCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGT : 274660 105 : lGlnHisMetGlnArgAspTrpGlnIleIleLysHisThrArgAspArgGluIleMet : 123 |:!!|||||||||! !||||||::!|||:!:! ... !!..!|||!:!:!!:!:||| lGluHisMetGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMet 274661 : GGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATG : 274717 124 : AlaArgAsnAlaGlnLeuGlyArgLeuValAlaGlyPheCysAlaValPheMetHisG : 143 !!:!||||||:!!:!!||||||! !|||||| !|||||||||!.!||||||!!. LeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnC 274718 : TTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAAT : 274777 144 : lyGlyValPheSerTyrAsnIleValCysGlyMetThrThrValValValProIleGl : 162 !!||||||.!!!!!||| !:!::!! !.!.!.|||! ! !..!|||! !:!!|| ysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGl 274778 : GCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGG : 274834 163 : yAspAsnArgSerValGluMetIleGlnLeuProValProSerTyrSerLysPheIle : 181 | |||..!!!! ! :!! !..!|||||| ! !:!!|||!.!|||.!!:!! y---AsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLysLysIleVal 274835 : G---AACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTC : 274888 182 : AspAlaArgPheSerProAlaAsnGluIleValLeuMetThrGlnValLeuSerThrP : 201 ! !.! ! ||||||.!!||||||||||||||| :!!||| !!:!!||| !| AlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyP 274889 : GCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGAT : 274948 202 : heValValAsnSerThrThrValSerAlaCysSerLeuAlaAlaValPheAlaMetHi : 220 ||:!!|||||||||!:!.!!|||.!!|||! !||||||||||||||||||||| || heIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHi 274949 : TTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACA : 275005 221 : sAlaCysGlyGlnLeuAspIleLeuMetAlaArgLeuAsnArgLeuValGluGlyGlu : 239 ||||! !|||||||||..!:!:|||||| ! !!:!!!.!..!!!!|||.!. !... sAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheValAsnHisSer 275006 : CGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCC : 275062 240 : AspSerArgThrSerGluSerLeuGlnArgArgLeuAlaAsnIleValAspHisHisL : 259 ...:::......... !..!:!!!.! :!!|||!!:||||||| ArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValValValGluHisHisL 275063 : AGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATC : 275122 260 : euArgValLeu{Se} >>>> Target Intron 1 >>>> {r}PheIleAlaAr : 267 |||||||||||{||} 74 bp {|}||||||||||| euArgValLeu{Se}++ ++{r}PheIleAlaAr 275123 : TGAGGGTACTC{AG}gt.........................ag{T}TTCATAGCACG : 275220 268 : gIleGluAspValMetHisGlnIleCysLeuValGluLeuLeuGlyCysThrPheAsn : 286 ||||||||||||||||:!!!:!||||||!!!:!!||||||!!! !||||||.!.:!! gIleGluAspValMetAsnArgIleCysPheMetGluLeuPheLysCysThrLeuAsp 275221 : TATCGAGGATGTGATGAATCGAATATGCTTCATGGAATTGTTCAAGTGTACTCTGGAT : 275277 287 : LeuCysMetLeuGlyTyrTyrThrIleThr : 296 :!!||||||||||||||||||! !:!!||| MetCysMetLeuGlyTyrTyrIleLeuThr 275278 : ATGTGCATGCTTGGCTATTACATTCTCACG : 275309 vulgar: CbirOr21 7 296 . KQ414889.1 274371 275309 + 735 M 155 465 G 1 0 M 99 297 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274372 275309 735 + . gene_id 6 ; sequence CbirOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274372 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274372 275135 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275309 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275309 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274372 275309 735 + . alignment_id 6 ; Query CbirOr21 ; Align 274372 8 465 ; Align 274837 164 297 ; Align 275211 264 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 623 Query range: 10 -> 333 Target range: 208209 -> 210774 11 : AspTyrSerValGlnLeuAsnArgTrpPheLeuLysProLeuGlyAlaTrpProArgS : 30 ..!!:!!:!|||!::|||||| !||| |||||| !:!!|||:!!|||||||||| SerPheAsnValArgLeuAsnValTrpThrLeuLysIleIleGlySerTrpProArgS 208210 : AGCTTCAACGTTCGTCTGAACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGAT : 208267 31 : erAlaThrThrSerLysGlyGluArgAlaLeuSerTyrIleLeuIlePheIleCysPh : 49 || ! ! !||| ! !|||!.!::!! ! ! !:!!|||! ! ! :!! !! erIleAspArgSerTrpLeuGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHi 208268 : CTATAGATCGTTCCTGGTTAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCA : 208324 50 : ePheLeuIleAlaLeuThrAlaValProCysAlaLeuAsnValPhePheGluGluArg : 68 !! !|||:!!!.!!!!! !!.!:!!||| !!.!:!! !!.!.!!.!!! !! ..! sCysLeuLeuGlyPheIleValIleProThrGlyMetPheAlaIleLeuValValGlu 208325 : CTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAG : 208381 69 : AspIleValLeuLysLeuArgAlaIleGlyProLeuSerHisTrpIleMetGlyAlaM : 88 |||.!! ! !:!!|||!:! ! !.!! !!|||||| !!::!!:|||!.! !! AspPheTyrAspGlnLeuLysIleCysSerAlaLeuSerPhePheMetMetAlaPheT 208382 : GATTTTTACGACCAATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCA : 208441 89 : etAsnTyrCysSerLeuLeuLeuArgSerAlaAspIleArgGlyCysValGlnHisMe : 107 !!!.||| ! !:!! !:!!|||..!!.!||||||||| !||||||:!!:!!:! hrLysTyrValIleMetThrValArgGluGlyAspIleArgLysCysValGluTyrVa 208442 : CGAAGTACGTGATCATGACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGT : 208498 108 : tGlnArgAspTrpGlnIleIleLysHisThrArgAspArgGluIleMetAlaArgAsn : 126 ::!! !||||||::!! !:!::!!||| !..!||||||:!!|||||| ! !||| lGluAlaAspTrpArgAsnValGluHisGluGluAspArgLysIleMetLeuAspAsn 208499 : CGAGGCTGATTGGAGAAACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAAC : 208555 127 : AlaGlnLeuGlyArgLeuValAlaGlyPheCysAlaValPheMetHisGlyGlyValP : 146 |||...!!!!.!||| !:!! !! !.!.|||!.!!.!||||||:!!|||||||||. AlaSerPheAlaArgLysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyValI 208556 : GCGAGTTTCGCCAGGAAACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaa : 208615 147 : heSerTyrAsnIleValCysGlyMetThr<->ThrValValValProIleGlyAspAs : 164 .. ||| |||!.!! !:!:||| ! !|||||| ! |||! !|| lePheTyrTyrIleAlaLeuProLeuThrArgAspLysValValGluGluGlyGlyAs 208616 : ttttctattacaTCGCTTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAA : 208672 165 : nArgSerValGluMetIleGlnLeuProValProSerTyrSerLysPheIleAspAla : 183 | !!!! !..!! !:!: ! !|||||||||!.!!:! .!!:!:|||!.! nLeuThrTyrArgArgLeuValTyrProValProLysPhe------IleLeuAspVal 208673 : TTTGACGTACAGAAGGCTGGTTTATCCTGTTCCTAAGTTC------ATTCTGGACGTT : 208723 184 : ArgPheSerProAlaAsnGluIleValLeuMetThrGlnValLeuSerThrPheValV : 203 |||!:!||||||!.!||||||||| !!! !! !..!|||:!!|||||| !||||||! ArgTyrSerProValAsnGluIlePheTyrThrValGlnLeuLeuSerGlyPheValA 208724 : CGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTG : 208783 204 : alAsnSerThrThrValSerAlaCysSerLeuAlaAlaValPheAlaMetHisAlaCy : 222 .!:!!!:!! !||||||.!!||||||.!!|||||||||:!!.!!|||||||||||||| laHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCy 208784 : CTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTG : 208840 223 : sGlyGlnLeuAspIleLeuMetAlaArgLeuAsnArgLeuValGluGlyGluAspSer : 241 ||||||||||.!.|||||||||:!! !!:!!.!.!:!||||||!!:|||..!!!:..! sGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeuValAspGlyArgGluAsp 208841 : CGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTGGTCGATGGACGGGAGGAC : 208897 242 : ArgThrSerGluSerLeuGlnArgArgLeuAlaAsnIleValAspHisHisLeuArgV : 261 ..! ..!:!!!:!|||.!.!:!||||||||||||||||||!!:!!.|||:!!|||| Glu---GluLysAsnLeuAspGlnArgLeuAlaAsnIleValGluGlnHisValArgV 208898 : GAG---GAGAAGAATTTGGATCAGAGGTTGGCTAATATCGTGGAGCAGCATGTTCGAG : 208954 262 : alLeu{Se} >>>> Target Intron 1 >>>> {r}PheIleAlaArgIleGl : 269 ||:!!{!:} 1536 bp {!}|||||||||! !! !|| alIle{As}++ ++{n}PheIleAlaLeuThrGl 208955 : TGATC{AA}gt.........................ag{T}TTTATAGCTCTGACAGA : 210514 270 : uAspValMetHisGlnIleCysLeuValGluLeuLeuGlyCysThrPheAsnLeuCys : 288 |:!!:!!:!!|||:!!|||! |||:!!|||:!!:!!|||||||||.!.|||:!!||| uAsnLeuLeuHisGluIleSerLeuIleGluMetValGlyCysThrLeuAsnMetCys 210515 : GAACCTCCTGCACGAGATATCATTGATAGAAATGGTGGGGTGCACTCTGAACATGTGT : 210571 289 : MetLeuGlyTyrTyrThrIleThr >>>> Target Intron 2 >>>> SerTr : 298 .!.|||||||||||||||!!:! ! 66 bp ..!|| PheLeuGlyTyrTyrThrMetIle++ ++GluTr 210572 : TTCCTTGGCTATTACACGATGATTgt.........................agGAATG : 210667 299 : pAsnAsnIleAspIleLysGlyIleValProTyrIleIleValTyrIleSerMetThr : 317 |:!!::!! !||| !! .!!! !:!! !!||||||:!!:!! !! !|||:!:||| pAspSerLysAspProIleSerSerLeuThrTyrIleValLeuLeuThrSerValThr 210668 : GGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTACTCCTCACTTCTGTCACG : 210724 318 : PheAsnIlePheThrPheCysTyrIleGlyGluIleLeuThrGlnGln : 333 ||||||||||||! !||||||||||||||||||:!:|||.!!:!!||| PheAsnIlePheIlePheCysTyrIleGlyGluValLeuAlaGluGln 210725 : TTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGCTGAACAg : 210774 vulgar: CbirOr21 10 333 . KQ414889.1 208209 210774 + 623 M 145 435 G 0 3 M 22 66 G 2 0 M 63 189 G 1 0 M 19 57 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208210 210774 623 + . gene_id 7 ; sequence CbirOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208210 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208210 208961 . + . insertions 3 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208210 210774 623 + . alignment_id 7 ; Query CbirOr21 ; Align 208210 11 435 ; Align 208648 156 66 ; Align 208714 180 189 ; Align 208903 244 57 ; Align 210499 264 99 ; Align 210664 297 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 614 Query range: 11 -> 396 Target range: 278576 -> 280465 12 : TyrSerValGlnLeuAsnArgTrpPheLeuLysProLeuGlyAlaTrpProArgSerA : 31 ||||||||||||:!!|||||||||||||||||||||:!!|||!.!||||||! !||| TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 32 : laThrThrSerLysGlyGluArgAlaLeuSerTyrIleLeuIlePheIleCysPhePh : 50 ! !..!!!!! !|||!:! ! !||| :!!||| !!.||| !!! !|| euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 51 : eLeuIleAlaLeuThrAlaValProCysAlaLeu<->AsnValPhePheGluGluArg : 68 |||||||!.!!!! ! !||||||||||||||| !..|||.!! !:!! !! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 69 : AspIleValLeuLysLeuArgAlaIleGlyProLeuSerHisTrpIleMetGlyAlaM : 88 |||:!!! ! !|||:!!!:! !||||||||||||||| !!! ! |||!.!.!!! AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 89 : etAsnTyrCysSerLeuLeuLeuArgSerAlaAspIleArgGlyCysValGlnHisMe : 107 !:!!.|||! !! !|||:!!! !|||.!!!.! ! ||| !! !||||||.!. !!!! leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 108 : tGlnArgAspTrpGlnIle<-><-><->IleLysHisThrArgAspArgGluIleMet : 123 :!::! !||||||...:!! !:::... ...:::|||||||||||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 124 : AlaArgAsnAlaGlnLeuGlyArgLeuValAlaGlyPheCysAlaValPheMetHisG : 143 ! !!:!|||::!:!!||||||! !:!!||| !||| !!|||! !||||||:!!. ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 144 : lyGlyValPheSerTyrAsnIleValCysGlyMetThrThrValValValProIleGl : 162 .!|||! ! !!! !|||!.! !||| !:!! !.!!||| !..! !||| erGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIl 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCAT : 279039 163 : yAspAsnArgSerValGluMetIleGlnLeuProValProSerTyrSerLysPheIle : 181 !||||||..!!!!|||..! ! !!!!|||:!! ||| !! .!!:!! eAspAsnGluThrValArgSerGlnAlaPheProIle------TyrArgGlyLeuLeu 279040 : CGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATC------TATCGCGGCCTCCTC : 279090 182 : AspAlaArgPheSerProAlaAsnGluIleValLeuMetThrGlnValLeuSerThrP : 201 ||| !!||| !||||||:!! !|||||||||! !.!.! !||| !|||:!!.!!| AspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaP 279091 : GATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGT : 279150 202 : heValValAsnSerThrThrValSerAlaCysSerLeuAlaAlaValPheAlaMetHi : 220 |||||:!! !!|||..!||||||.!!|||||||||||| !|||||||||!.!||||| heValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHi 279151 : TCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCA : 279207 221 : sAlaCysGlyGlnLeuAspIleLeuMetAlaArgLeuAsnArgLeuValGluGlyGlu : 239 |!.!|||||||||!!! ||||||:!!.!!!:!|||:!!!:!|||:!!!!:|||! ! sValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyVal 279208 : CGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTG : 279264 240 : AspSerArgThrSerGluSerLeu<->GlnArgArgLeuAlaAsnIleValAspHisH : 258 ! .!!|||! !||| !||| ! :!!!:!||||||!.!:!!|||:!!!!:|||| LysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisH 279265 : AAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATC : 279324 259 : isLeuArg >>>> Target Intron 1 >>>> ValLeuSerPheIleAlaArg : 267 |||||!:! 651 bp :!!|||! ! !||| ! ! isLeuLys-+ +-MetLeuPheAspIleLeuPhe 279325 : ATCTGAAGat.........................atATGCTTTTTGACATATTATTT : 280002 268 : IleGluAspValMetHisGlnIleCysLeuValGluLeuLeuGlyCysThrPheAsnL : 287 ! !.!.! ! !! !!.!.:!!|||! ! !!.!.:!!:!! !...! !.!! ! ThrHisGlyAsnArgAspAspLeuCysTyrPheHisIleValMetAlaLysIleAlaP 280003 : ACTCACGGTAACAGAGACGACTTATGTTATTTCCATATTGTAATGGCAAAAATTGCAT : 280062 288 : euCysMetLeuGlyTyrTyrThrIleThrSerTrpAsnAsnIleAspIleLysGlyIl : 306 !! !|||! !..!! ! ..!.!! !..!|||.!..!.! !||| !! !|||! heValMetTyrSerLeuSerValPhe***GluTrpGluGlnAsnAspAlaIleGlyTh 280063 : TCGTCATGTACTCGTTGTCAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAAC : 280119 307 : eValProTyrIleIleValTyrIleSerMetThrPheAsnIlePheThrPheCysTyr : 325 !! !!|||:!!!!: !! !||||||:!:|||||||||:!!|||! !.!!|||||| rPheThrTyrLeuMetPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyr 280120 : GTTCACGTATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTAC : 280176 326 : IleGlyGluIleLeuThrGlnGln >>>> Target Intron 2 >>>> CysLy : 335 |||||||||||||||:!!:!!||| 74 bp ||| IleGlyGluIleLeuSerGluGln++ ++CysLe 280177 : ATCGGTGAAATTCTCTCCGAACaggt.........................agTGCTT : 280280 336 : sAsnIleGlyGluThrAlaTyrMetThrAspTrpTyrTyrLeuProHisLysThrAla : 354 !!!.:!!|||! !:!!.!!||||||! !||||||||| !|||||| |||! !||| uLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAla 280281 : AAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCA : 280337 355 : ArgAsnLeuIleLeuIleIleSerArgSerAsnValValIleLysIleThrAlaGlyL : 374 !:!..!||||||||||||.!!:!! !|||||| ! !||||||:!!|||||||||| GlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyL 280338 : CAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAA : 280397 375 : ysLeuValGlnLeuSerIleAlaThrPheSerAspValMetLysThrSerLeuValTy : 393 ||:!!:!!.!.||||||:!!::!!:!|||!!!..!|||! ! ! !!:!||| !|| ysIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTy 280398 : AGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTA : 280454 394 : rLeuAsnIle : 396 |! !:!!:!: rTyrHisLeu 280455 : TTATCATTTG : 280465 vulgar: CbirOr21 11 396 . KQ414889.1 278576 280465 + 614 M 50 150 G 0 3 M 52 156 G 0 9 M 61 183 G 2 0 M 71 213 G 0 3 M 13 39 5 0 2 I 0 647 3 0 2 M 73 219 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 280465 614 + . gene_id 8 ; sequence CbirOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278577 279332 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279332 . + . insertions 15 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 279333 279334 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 279333 279983 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279982 279983 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 279984 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 279984 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278577 280465 614 + . alignment_id 8 ; Query CbirOr21 ; Align 278577 12 150 ; Align 278730 62 156 ; Align 278895 114 183 ; Align 279078 177 213 ; Align 279294 248 39 ; Align 279984 261 219 ; Align 280277 334 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 581 Query range: 10 -> 335 Target range: 226927 -> 228364 11 : AspTyrSerValGlnLeuAsnArgTrpPheLeuLysProLeuGlyAlaTrpProArgS : 30 :!! |||:!!|||||||||||||||.!.||||||||||||||| !|||||| !| AsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerS 226928 : AACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGT : 226985 31 : erAlaThrThrSerLysGlyGluArgAlaLeuSerTyrIleLeuIlePheIleCysPh : 49 || !! !!:!|||::! !! !|||..!!!!|||!:::!::!! !|||:!!|||!: erArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTy 226986 : CGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTA : 227042 50 : ePheLeuIleAlaLeuThrAlaValProCysAlaLeuAsnValPhePheGluGluArg : 68 ! |||!!:::!!!! ! !||| !! !!!.!||| !!||| !!.!.|||! !!:! rAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLys 227043 : CGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAA : 227099 69 : AspIleValLeuLysLeuArgAlaIleGlyProLeuSerHisTrpIleMetGlyAlaM : 88 ! ! ! ! !! !|||!:! !|||||||||:!!||| !!:: |||..! !: GlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuL 227100 : GGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCC : 227159 89 : etAsnTyrCysSerLeuLeuLeuArgSerAlaAspIleArgGlyCysValGlnHisMe : 107 !:!!.|||! !! !||| !!!!!.!..!! !||||||! !! !||||||:!!!..!! euLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIl 227160 : TCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGAT : 227216 108 : tGlnArgAspTrpGlnIleIleLysHisThrArgAspArgGluIleMetAlaArgAsn : 126 ::!! !!||||||:!!! !|||!:!:!! !..!||||||.!.:!:|||!.!! ! !! eLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyr 227217 : CAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTAC : 227273 127 : AlaGlnLeuGlyArgLeuValAlaGlyPheCysAlaValPheMetHisGlyGlyValP : 146 ||| ! ! !|||||| !:!! ! !.!!|||.!! !!|||:!: !...... AlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheV 227274 : GCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcg : 227333 147 : heSerTyrAsnIleValCysGlyMetThrThrValValValProIleGlyAspAsnAr : 165 ::: |||||| !!!:!.!.!!! ! !||| !!! ! !|||...!. alPhePheTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGlyAs 227334 : tatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAA : 227390 166 : gSerValGluMetIleGlnLeuProValProSerTyrSerLysPheIleAspAlaArg : 184 ! ! ... ||||||:!!||| !!|||! ! !.!! .!! !|||!.!||| nHis---SerTyrIleGlnMetProPheProPheProLysIleIleAlaAspValArg 227391 : CCAC---AGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGT : 227444 185 : PheSerProAlaAsnGluIleValLeuMetThrGlnValLeuSerThrPheValValA : 204 !:!|||||| !||||||||| !!!!! !..!||| !!:!!!!! !.!!|||:!!: TyrSerProPheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuH 227445 : TACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGC : 227504 205 : snSerThrThrValSerAlaCysSerLeuAlaAlaValPheAlaMetHisAlaCysGl : 223 !!.!!..!||| !:!!|||||||||:!!||||||:!!.!!|||:!:||||||||||| isGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGl 227505 : ACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGG : 227561 224 : yGlnLeuAspIleLeuMetAlaArgLeuAsnArgLeuValGluGlyGluAspSerArg : 242 ||||:!!!!::!:|||:!!:!! !!|||...!.!|||:!!!!:|||..! :!! ! yGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGlyArg---AlaAsp 227562 : TCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGCAGA---GCGGAT : 227615 243 : ThrSerGluSerLeuGlnArgArgLeuAlaAsnIleValAspHisHisLeuArgValL : 262 ! !|||:!!!!!|||.!. !|||:!!|||!:!|||||| !||||||:!!|||:!!| MetSerLysThrLeuAspAspArgIleAlaSerIleValThrHisHisValArgIleL 227616 : ATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACCACGTTCGAATAT : 227675 263 : eu{Se} >>>> Target Intron 1 >>>> {r}PheIleAlaArgIleGluAs : 270 ||{!:} 396 bp {!}|||:!:|||! !|||||| ! eu{As}++ ++{n}PheLeuAlaLeuIleGluLy 227676 : TG{AA}gt.........................ag{C}TTTCTGGCCCTCATAGAGAA : 228095 271 : pValMetHisGlnIleCysLeuValGluLeuLeuGlyCysThrPheAsnLeuCysMet : 289 ..!|||!!.||||||..!!!!||||||!!!||||||||||||.!.! !||||||:!: sThrMetGlnGlnIleAlaPheValGluPheLeuGlyCysThrIleIleLeuCysLeu 228096 : AACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGTACAATAATTCTGTGCCTC : 228152 290 : LeuGlyTyrTyrThrIleThr >>>> Target Intron 2 >>>> SerTrpAs : 299 :!!! !||||||! !|||||| 72 bp ..!||||| IleGluTyrTyrIleIleThr++ ++GluTrpAs 228153 : ATCGAGTATTACATCATAACGgt.........................agGAATGGAA : 228254 300 : nAsnIleAspIleLysGlyIleValProTyrIleIleValTyrIleSerMetThrPhe : 318 | ! !!!::!!! ! ! !||| !!||| ! :!! !:!!|||.!.|||||| nProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerPheThrPhe 228255 : TCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCTTTAccttc : 228311 319 : AsnIlePheThrPheCysTyrIleGlyGluIleLeuThrGlnGlnCysLys : 335 ||||||||| |||||||||||||||||||||:!!.!!:!!!!. !:! AsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluHisValArg 228312 : aatattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACGTAAGA : 228364 vulgar: CbirOr21 10 335 . KQ414889.1 226927 228364 + 581 M 156 468 G 1 0 M 72 216 G 1 0 M 22 66 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226928 228364 581 + . gene_id 9 ; sequence CbirOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226928 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226928 227679 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228364 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228364 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226928 228364 581 + . alignment_id 9 ; Query CbirOr21 ; Align 226928 11 468 ; Align 227396 168 216 ; Align 227612 241 66 ; Align 228077 264 99 ; Align 228248 297 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 569 Query range: 7 -> 262 Target range: 262837 -> 263599 8 : AspLeuHisAspTyrSerValGlnLeuAsnArgTrpPheLeuLysProLeuGlyAlaT : 27 ..!||| !|||||||||:!!|||:!!|||||||||.!.|||||||||:!!||||||| SerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaT 262838 : AGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCAT : 262895 28 : rpProArgSerAlaThrThrSerLysGlyGluArgAlaLeuSerTyrIleLeuIlePh : 46 |||||! !||||||:!!! !|||!:! !|||||| !:!!!!!!:!:!!|||||| ! rpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleVa 262896 : GGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGT : 262952 47 : eIleCysPhePheLeuIleAlaLeuThrAlaValProCysAlaLeuAsnValPhePhe : 65 !:!!|||!:!! !|||||| !! !|||!.!:!!|||! ! !|||:!!:!! !!.!. lValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeu 262953 : CGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTA : 263009 66 : GluGluArgAspIleValLeuLysLeuArgAlaIleGlyProLeuSerHisTrpIleM : 85 |||! ..!:!!.!! !:!!||||||!:!!.!:!!|||||||||.!!!!.|||.!!: GluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheV 263010 : GAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCG : 263069 86 : etGlyAlaMetAsnTyrCysSerLeuLeuLeuArgSerAlaAspIleArgGlyCysVa : 104 !:||| !!!:|||||| !!!!|||||||||!.!||| !||||||!:!|||||||| alGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysVa 263070 : TCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGT : 263126 105 : lGlnHisMetGlnArgAspTrpGlnIleIleLysHisThrArgAspArgGluIleMet : 123 |||||||:!!|||..!|||||| |||:!:! ... !..!|||!:!...|||||| lGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMet 263127 : GCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATG : 263183 124 : AlaArgAsnAlaGlnLeuGlyArgLeuValAlaGlyPheCysAlaValPheMetHisG : 143 !!:!||||||:!!! !||||||! !||||||!.!! !||||||:!!||||||!!. LeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnT 263184 : CTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAA : 263243 144 : lyGlyValPheSerTyrAsnIleValCysGlyMetThrThrValValValProIleGl : 162 !.!!:!!.!.!!! ! !:!!||| !.!.!.|||||| !|||:!! ! !|| hrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGl 263244 : CGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGG : 263300 163 : yAspAsnArgSerValGluMetIleGlnLeuProValProSerTyrSerLysPheIle : 181 |:!!.!.! !!!!:!! :!: !..!|||||| !||| !|||!.!:!!.!!||| yAsnGluThrArgIle---LeuArgMetLeuProCysProValTyrLysGluIleIle 263301 : TAACGAGACTAGAATT---CTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATT : 263354 182 : AspAlaArgPheSerProAlaAsnGluIleValLeuMetThrGlnValLeuSerThrP : 201 !.! ! !:!|||.!!||||||||| !!||| |||||| !!|||||| !| ProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyP 263355 : CCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTT : 263414 202 : heValValAsnSerThrThrValSerAlaCysSerLeuAlaAlaValPheAlaMetHi : 220 ||:!!|||!.!:!!|||||||||.!!|||! !.!!:!!.!!|||||||||||| || heIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHi 263415 : TCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCA : 263471 221 : sAlaCysGlyGlnLeuAspIleLeuMetAlaArgLeuAsnArgLeuValGluGlyGlu : 239 ||||||||||||||||:!!:!:||||||:!! !!:!!!....!!!!|||.!. !... sAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSer 263472 : TGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCC : 263528 240 : AspSerArgThrSerGluSerLeuGlnArgArgLeuAlaAsnIleValAspHisHisL : 259 ..!..!!.!!.!.!. !! ! ! !..!:!!!.! ||||||!!:||||||| ArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisL 263529 : AGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATC : 263588 260 : euArgValLeu : 262 ||||||||||| euArgValLeu 263589 : TGAGAGTTCTG : 263599 vulgar: CbirOr21 7 262 . KQ414889.1 262837 263599 + 569 M 160 480 G 1 0 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262838 263599 569 + . gene_id 10 ; sequence CbirOr21 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262838 263599 . + . KQ414889.1 exonerate:protein2genome:local exon 262838 263599 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 262838 263599 569 + . alignment_id 10 ; Query CbirOr21 ; Align 262838 8 480 ; Align 263318 169 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 483 Query range: 12 -> 265 Target range: 221381 -> 222134 13 : SerValGlnLeuAsnArgTrpPheLeuLysProLeuGlyAlaTrpProArgSerAlaT : 32 ||||||||||||!:!||||||.!!|||||||||:!!|||!.!||||||!.!||||||! SerValGlnLeuSerArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaA 221382 : AGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCA : 221439 33 : hrThrSerLysGlyGluArgAlaLeuSerTyrIleLeuIlePheIleCysPhePheLe : 51 .!! !|||! !! !|||||| !|||! !!:::!::!!! ! !!:!!|||!:! !|| snIleSerThrValGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLe 221440 : ACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCT : 221496 52 : uIleAlaLeuThrAlaValProCysAlaLeuAsnValPhePheGluGluArgAspIle : 70 ||||.!!!!! ! !|||||||||::!||| !!|||.!!.!!|||! !..!|||:!! uIleThrPheLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspVal 221497 : GATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTC : 221553 71 : ValLeuLysLeuArgAlaIleGlyProLeuSerHisTrpIleMetGlyAlaMetAsnT : 90 ! !!:!:!!!:! !:!:|||||||||||| !!! :!:|||!.! !:!:!!.| TyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysT 221554 : TACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGT : 221613 91 : yrCysSerLeuLeuLeuArgSerAlaAspIleArgGlyCysValGlnHisMetGlnAr : 109 || ! !|||:!!||| !..! !|||||||||! !|||:!!:!!!.!!!::!! ! yrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTr 221614 : ATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATG : 221670 110 : gAspTrpGlnIleIleLysHisThrArgAspArgGluIleMetAlaArgAsnAlaGln : 128 !||||||:!!! !|||! :!!:!!!:!|||!:!!!:|||||| !..!|||||| pAspTrpLysAsnIleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIle 221671 : GGATTGGAAGAATATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATT : 221727 129 : LeuGlyArgLeuValAlaGlyPheCysAlaValPheMetHisGlyGlyValPheSerT : 148 !!!||||||! !:!! ! !.!!|||.!! !!||||||:!!.!!||| | PheGlyArgArgLeuIleMetIleCysThrPhePheMetTyrSerGlyPheValPheT 221728 : TTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGTACAGTggtttcgtttttt : 221787 149 : yrAsnIleValCysGlyMetThrThrValValValProIleGlyAspAsnArgSerVa : 167 || |||!.! !.!.!:!..!! ! !:!!||| !||| :::|| yrTyrIleAlaIleProPheSerValGlyLysIleProAlaGlnAsp---ValAsnVa 221788 : attacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGAT---gtgaatgt : 221841 168 : lGluMetIleGlnLeuProValProSerTyrSerLysPheIleAspAlaArgPheSer : 186 | ...|||! !:!! ! !!|||! !! !!! .!!:!!|||.!!|||!:!||| lThrPheIleProMetValPheProPheSerArgPheIleValAspThrArgTyrSer 221842 : aacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGT : 221898 187 : ProAlaAsnGluIleValLeuMetThrGlnValLeuSerThrPheValValAsnSerT : 206 |||!.!|||||||||:!!!!! ! !|||:!!:!!:!! ! !:!!:!!:!!|||! ProValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerI 221899 : CCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTA : 221958 207 : hrThrValSerAlaCysSerLeuAlaAlaValPheAlaMetHisAlaCysGlyGlnLe : 225 !||| !:!!||||||||||||!.!|||:!!||||||:!!|||||||||||||||:! leThrSerAlaAlaCysSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMe 221959 : TTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGAT : 222015 226 : uAspIleLeuMetAlaArgLeuAsnArgLeuValGluGlyGluAspSerArgThrSer : 244 !.!.:!:||||||::! !!|||!!.!.!|||:!!.!.|||..! :!! !! !!!! tGlnValLeuMetSerTrpLeuLysHisLeuIleAsnGlyArg---AlaAspMetCys 222016 : GCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGCCGG---GCGGATATGTGT : 222069 245 : GluSerLeuGlnArgArgLeuAlaAsnIleValAspHisHisLeuArgValLeuSerP : 264 .!.!:!:!!.!.||||||:!!|||!!.||||||:!!!!.|||:!!|||:!!|||..!! AsnAsnValAspArgArgIleAlaLysIleValAsnGlnHisValArgIleLeuGlnT 222070 : AACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAACACGTTCGAATATTGCAGT : 222129 265 : heIle : 265 :!:!! yrVal 222130 : ATGTA : 222134 vulgar: CbirOr21 12 265 . KQ414889.1 221381 222134 + 483 M 151 453 G 1 0 M 75 225 G 1 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221382 222134 483 + . gene_id 11 ; sequence CbirOr21 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221382 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221382 222134 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 221382 222134 483 + . alignment_id 11 ; Query CbirOr21 ; Align 221382 13 453 ; Align 221835 165 225 ; Align 222060 241 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 465 Query range: 11 -> 262 Target range: 284523 -> 285285 12 : TyrSerValGlnLeuAsnArgTrpPheLeuLysProLeuGlyAlaTrpProArgSerA : 31 ||||||||||||:!!|||||||||||||||||||||:!!|||!.!||||||! !||| TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 32 : laThrThrSerLysGlyGluArgAlaLeuSerTyrIleLeuIlePheIleCysPhePh : 50 ! !..!!!!! !|||!:! ! !||| :!!||| !!.||| !!! !|| euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 51 : eLeuIleAlaLeuThrAlaValProCysAlaLeu<->AsnValPhePheGluGluArg : 68 |||||||!.!!!! ! !||||||||||||||| !..|||.!! !:!! !! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 69 : AspIleValLeuLysLeuArgAlaIleGlyProLeuSerHisTrpIleMetGlyAlaM : 88 |||:!!! ! !|||:!!!:! !||||||||||||||| !!! !!:|||!.!|||! AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 89 : etAsnTyrCysSerLeuLeuLeuArgSerAlaAspIleArgGlyCysValGlnHisMe : 107 !:!!.|||! !! !|||:!!! !|||.!!!.! ! ||| !! !||||||:!! !!!! leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 108 : tGlnArgAspTrpGlnIle<->IleLysHisThrArg<-><->AspArgGluIleMet : 123 :!:: !||||||...:!! :!!..!|||!::::: :::|||||||||||| eArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMet 284813 : TCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTG : 284869 124 : AlaArgAsnAlaGlnLeuGlyArgLeuValAlaGlyPheCysAlaValPheMetHisG : 143 ! !!:!|||::!:!!||||||! !:!!||| !|||||||||! !||||||:!!. ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrS 284870 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATT : 284929 144 : lyGlyValPheSerTyrAsnIleValCysGlyMetThrThrValValValProIleGl : 162 .!|||! !|||! !|||!.!! ||| !:!! !|||||| !..! !||| erGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIl 284930 : CCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCAT : 284986 163 : yAspAsnArgSerValGluMetIleGlnLeuProValProSerTyrSerLysPheIle : 181 !||||||..!!!!|||..! ! !!!!|||:!! ||| !! .!!:!! eAspAsnGluThrValArgSerGlnAlaPheProIle------TyrArgGlyLeuLeu 284987 : CGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATC------TATCGCGGCCTTCTC : 285037 182 : AspAlaArgPheSerProAlaAsnGluIleValLeuMetThrGlnValLeuSerThrP : 201 ||| !!||| !||||||:!! !|||||||||! !.!.! !||| !|||:!!.!!| AspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaP 285038 : GATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGT : 285097 202 : heValValAsnSerThrThrValSerAlaCysSerLeuAlaAlaValPheAlaMetHi : 220 |||||:!! !!|||..!||||||.!!||||||||||||||||||||||||!.!||||| heValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHi 285098 : TCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCA : 285154 221 : sAlaCysGlyGlnLeuAspIleLeuMetAlaArgLeuAsnArgLeuValGluGlyGlu : 239 |!.!|||||||||!!! ||||||:!!.!!!:!|||:!!!:!||||||!!:|||! ! sValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyVal 285155 : CGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTG : 285211 240 : AspSerArgThrSerGluSerLeu<->GlnArgArgLeuAlaAsnIleValAspHisH : 258 ! .!!|||! !.!! !||| ! :!!!:!||||||!.!:!!|||:!!!!:|||| LysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisH 285212 : AAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATC : 285271 259 : isLeuArgValLeu : 262 |||||!:!:!!||| isLeuLysIleLeu 285272 : ATCTGAAGATACTG : 285285 vulgar: CbirOr21 11 262 . KQ414889.1 284523 285285 + 465 M 50 150 G 0 3 M 52 156 G 0 3 M 5 15 G 0 6 M 56 168 G 2 0 M 71 213 G 0 3 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 285285 465 + . gene_id 12 ; sequence CbirOr21 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284524 285285 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 285285 . + . insertions 15 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 284524 285285 465 + . alignment_id 12 ; Query CbirOr21 ; Align 284524 12 150 ; Align 284677 62 156 ; Align 284836 114 15 ; Align 284857 119 168 ; Align 285025 177 213 ; Align 285241 248 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 460 Query range: 10 -> 265 Target range: 212869 -> 213628 11 : AspTyrSerValGlnLeuAsnArgTrpPheLeuLysProLeuGlyAlaTrpProArgS : 30 ::: |||::: !! !|||||||||.!!||||||||| !||| !|||||| !! AsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspL 212870 : aatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACA : 212927 31 : erAlaThrThrSerLysGlyGluArgAlaLeuSerTyrIleLeuIlePheIleCysPh : 49 .!:!! !..!||| ! !|||!:! !:!!:!! :!::!!! ! !:!!|||!: ysSerTyrValSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTy 212928 : AGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTA : 212984 50 : ePheLeuIleAlaLeuThrAlaValProCysAlaLeuAsnValPhePheGluGluArg : 68 ! !||||||!.!! ! !!.!:!!||||||::!||| !!||||||.!!!!:! !... rGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGlu 212985 : CGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgag : 213041 69 : AspIleValLeuLysLeuArgAlaIleGlyProLeuSerHisTrpIleMetGlyAlaM : 88 :::||| ::::!!..! !.!!||| !!!!:!! !!! :!: !.! ! AsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuT 213042 : aatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGT : 213101 89 : etAsnTyrCysSerLeuLeuLeuArgSerAlaAspIleArgGlyCysValGlnHisMe : 107 !!!.||| !||||||:!!|||!.!.!!! !||||||||| !||||||:!!||||| rpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMe 213102 : GGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATAT : 213158 108 : tGlnArgAspTrpGlnIleIleLysHisThrArgAspArgGluIleMetAlaArgAsn : 126 |:!! !||||||:!!! !|||! !||| !..!|||!:!|||||||||||| !||| tLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsn 213159 : GAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAAC : 213215 127 : AlaGlnLeuGlyArgLeuValAlaGlyPheCysAlaValPheMetHisGlyGlyValP : 146 |||...!!!|||!:! !:!!!.! !.!!|||||| !!||||||:!! !||| !! AlaSerPheGlyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheT 213216 : GCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCA : 213275 147 : heSerTyrAsnIleValCysGlyMetThrThrValValValProIleGlyAspAsnAr : 165 ! !||| !:!!||| !!!:!:!.!!! ! !:!! :!!!.!!!::!!! hrPheTyrPheLeuValValProIleSerAlaAspLysMet---ValAlaGluAspLe 213276 : CGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATG---GTAGCGGAGGATCT : 213329 166 : gSerValGluMetIleGlnLeuProValProSerTyrSerLysPheIleAspAlaArg : 184 !!:!||| !.!.! !|||:!! !|||||| !! !!! .!!:!!|||!.!||| uAsnValThrPheArgGlnMetValValProValSerArgPheIleValAspValArg 213330 : TAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGA : 213386 185 : PheSerProAlaAsnGluIleValLeuMetThrGlnValLeuSerThrPheValValA : 204 !:!||||||!.!||||||||| !!!!!:!!! !|||:!!:!!:!! ! ! :!!:!!: TyrSerProValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleH 213387 : TACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTC : 213446 205 : snSerThrThrValSerAlaCysSerLeuAlaAlaValPheAlaMetHisAlaCysGl : 223 !!:!!! !.!!||| !|||||||||||||||||||||||||||:!:||||||||||| isAlaIleAlaValValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGl 213447 : ATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGG : 213503 224 : yGlnLeuAspIleLeuMetAlaArgLeuAsnArgLeuValGluGlyGluAspSerArg : 242 ||||:!!! !|||||||||::! !!|||.!.!.!|||:!!!!:|||..!!!:..! yGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGlyArgGluAsp--- 213504 : ACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGTAGAGAGGAT--- : 213560 243 : ThrSerGluSerLeuGlnArgArgLeuAlaAsnIleValAspHisHisLeuArgValL : 262 ! !|||:!!!:!:!!.!. !|||:!!||| !||||||:!!!!.|||:!!|||:!!| MetSerLysAsnValAspAspArgIleAlaValIleValAsnGlnHisValArgIleL 213561 : ATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATAC : 213617 263 : euSerPheIle : 265 ||!.!!:::!: euLysTrpVal 213618 : TGAAGTGGGTG : 213628 vulgar: CbirOr21 10 265 . KQ414889.1 212869 213628 + 460 M 149 447 G 1 0 M 81 243 G 1 0 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212870 213628 460 + . gene_id 13 ; sequence CbirOr21 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212870 213628 . + . KQ414889.1 exonerate:protein2genome:local exon 212870 213628 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 212870 213628 460 + . alignment_id 13 ; Query CbirOr21 ; Align 212870 11 447 ; Align 213317 161 243 ; Align 213560 243 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 424 Query range: 10 -> 272 Target range: 236849 -> 237626 11 : AspTyrSerValGlnLeuAsnArgTrpPheLeuLysProLeuGlyAlaTrpProArgS : 30 |||||||||:!!|||! !||||||||| :!!||| !:!!|||.!!||||||!:! AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGln- 236850 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAG- : 236907 31 : erAlaThrThrSerLysGlyGluArgAlaLeuSerTyrIleLeuIlePheIleCysPh : 49 !:!!|||!!. !|||||| !:!!||| ||||||! ! ! ||||||!: -----PheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTy 236908 : -----TTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTA : 236958 50 : ePheLeuIleAlaLeuThrAlaValProCysAlaLeuAsnValPhePheGluGluArg : 68 ! ! !||| !!!!:!! !:!!||||||:!!|||:!!:!!.!..!.|||:!! !! rThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGly 236959 : CACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGG : 237015 69 : AspIleValLeuLysLeuArgAlaIleGlyProLeuSerHisTrpIleMetGlyAlaM : 88 !.!! ! !|||:!!!:! !:!!||| !!||||||||||||:!:.!. !! !! ThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleI 237016 : ACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCA : 237075 89 : etAsnTyrCysSerLeuLeuLeuArgSerAlaAspIleArgGlyCysValGlnHisMe : 107 !:!:!||| !! !|||||||||||| !! ! !|||||| !! ! !!.!.||||| leSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMe 237076 : TCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATAT : 237132 108 : tGlnArgAspTrpGlnIleIleLysHisThrArgAspArgGluIleMetAlaArgAsn : 126 |:!!! !||||||::!! ! ... ... :::|||:::||| !!:! !! tGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyr 237133 : GGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTAC : 237189 127 : AlaGlnLeuGlyArgLeuValAlaGlyPheCysAlaValPheMetHisGlyGlyValP : 146 |||:!!!!!.!!|||! !!.!||| !! !|||.!!:!!|||!!:|||||||||:!!. AlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleL 237190 : GCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATAC : 237249 147 : heSerTyrAsnIleValCysGlyMetThrThrValValValProIleGlyAspAsnAr : 165 !!.!!||| !:!!:!! !.! ||||||:!!|||||| !:!!||| |||!: euGlyTyrCysValMetThrAlaSerThrThrMetValValValValGly---AsnLy 237250 : TTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGA---AACAA : 237303 166 : gSerValGluMetIleGlnLeuProValProSerTyrSerLysPheIleAspAlaArg : 184 !!!!..! :!! ! !||||||:!!|||! !|||!.! !.!!:!! !.! ! sThrThrIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAsp 237304 : GACTACGATCTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGAT : 237360 185 : PheSerProAlaAsnGluIleValLeuMetThrGlnValLeuSerThrPheValValA : 204 !:! !! !|||!!:||||||:!!:!!:!!||| !!|||||| !|||:!!!.!| ThrAsnThrMetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaA 237361 : ACGAATACTATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGA : 237420 205 : snSerThrThrValSerAlaCysSerLeuAlaAlaValPheAlaMetHisAlaCysGl : 223 ||!:!!:!.!!:!!|||!.! ||||||.!!::!!.!.!..!! ||||||! !|| snAsnSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGl 237421 : ACAACAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGG : 237477 224 : yGlnLeuAspIleLeuMetAlaArgLeuAsnArgLeuValGluGlyGluAspSerArg : 242 |||||||..!:!::!!||| ! !:!!.!. !!!!|||...! !! ! !!||| yGlnLeuSerValValMetLeuSerIleGluAspPheValSerGluAlaArgArgArg 237478 : CCAGTTGAGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGA : 237534 243 : ThrSerGluSerLeuGlnArgArgLeuAlaAsnIleValAspHisHisLeuArgValL : 262 !!.!!!:..!! ! !..!:!! !!!..||||||!!:.!.||||||||||||| GlyLysAspAspHisPheAspGluIleProThrIleValGluGluHisLeuArgValL 237535 : GGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGT : 237594 263 : euSerPheIleAlaArgIleGluAspValMet : 272 ||!.!! :!!..! !:!:!!: :!!:!! euLys***ValCysLeuLeuAspLeuIleLeu 237595 : TGAAGTAAGTATGTTTGTTGGATTTGATTTTG : 237626 vulgar: CbirOr21 10 272 . KQ414889.1 236849 237626 + 424 M 19 57 G 2 0 M 131 393 G 1 0 M 109 327 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236850 237626 424 + . gene_id 14 ; sequence CbirOr21 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236850 237626 . + . KQ414889.1 exonerate:protein2genome:local exon 236850 237626 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 236850 237626 424 + . alignment_id 14 ; Query CbirOr21 ; Align 236850 11 57 ; Align 236907 32 393 ; Align 237300 164 327 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 339 Query range: 171 -> 399 Target range: 300207 -> 302157 172 : LeuProValProSerTyrSerLysPheIleAspAlaArgPheSerProAlaAsnGluI : 191 ||| !! !|||.!!|||..! !|||||||||.!!!:! !||||||.!! !!|||| LeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnThrSerProThrTyrGluI 300208 : TTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAACCAGTCCTACCTACGAga : 300265 192 : leValLeuMetThrGlnValLeuSerThrPheValValAsnSerThrThrValSerAl : 210 |||||...... ... .!!:!!.!!.!.:!!:!! !!!:!..!|||..!:!!|| leValPhePhePheHisCysPheAlaAlaMetIleMetTyrAsnValThrThrAlaAl 300266 : tcgtatttttctttcactgttTCGCAGCGATGATCATGTACAACGTGACAACGGCAGC : 300322 211 : aCysSerLeuAlaAlaValPheAlaMetHisAlaCysGlyGlnLeuAspIleLeuMet : 229 |! !||||||||||||:!!|||!.!! ||| !|||||||||:!!.!.|||! !||| aTyrSerLeuAlaAlaIlePheValThrHisIleCysGlyGlnIleGlnIleGlnMet 300323 : GTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGACAGATTCAGATACAGATG : 300379 230 : AlaArgLeuAsnArgLeuValGluGlyGluAspSerArgThrSerGluSerLeuGlnA : 249 |||||||||.!. !||||||||| !! !! ..!!:! !!:..! !! AlaArgLeuGluAspLeuValGluArgThrGlyGluLys------AspAspGlyProA 300380 : GCGAGATTGGAGGATCTGGTGGAGAGGACGGGAGAGAAG------GACGACGGTCCTG : 300433 250 : rgArgLeuAlaAsnIleValAspHisHisLeuArgValLeu{Se} >>>> Target : 263 !! !|||!.! !|||||| !!|||:!!!:!||||||{!!} 11 spProLeuValValIleValArgAspHisValLysValLeu{Ar}++ 300434 : ATCCTTTGGTCGTTATCGTTCGAGATCACGTGAAGGTTTTA{AG}gt........... : 300479 264 : Intron 1 >>>> {r}PheIleAlaArgIleGluAspValMetHisGlnIleCys : 276 10 bp {!} ! ..! !.!!... ! !! !!!.:!!||| ++{g}AspProCysSerPheArg***ProThrPheHisLeuCys 300480 : ..............ag{A}GACCCGTGTTCCTTCCGTTAGCCAACTTTTCATCTCTGC : 301624 277 : LeuValGluLeuLeuGlyCysThrPheAsnLeuCysMetLeuGlyTyrTyrThrIleT : 296 ||| ... |||!!.||| ! .!.||| !! ! !.!! AlaValIleLysPheGluSerThrLeuAsnAlaLysPheLeuArgValIle***Phe* 301625 : gctgtaattaaatttgaatctACTTTAAATGCAAAGTTTTTACGAGTAATTTGATTTT : 301684 297 : hrSerTrpAsnAsnIleAspIleLysGlyIleValProTyrIleIleValTyrIleSe : 315 !..!|||.!.|||! !|||! ! !.!!!::!! !!!:!.!!! !:!!! ! || **GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSe 301685 : AGGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTC : 301741 316 : rMetThrPheAsnIlePheThrPheCysTyrIleGlyGluIleLeuThrGlnGln > : 334 |.!.|||||||||||||||! !||||||||||||||||||||||||:!!:!!||| rPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301742 : GTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt. : 301800 335 : >>> Target Intron 2 >>>> CysLysAsnIleGlyGluThrAlaTyrMetTh : 344 80 bp |||!...!.||||||..!.!!:!!||| !! ++CysSerGlnIleGlySerAlaSerTyrGluIl 301801 : ........................agTGTAGCCAAATTGGTTCAGCATCGTACGAGAT : 301908 345 : rAspTrpTyrTyrLeuProHisLysThrAlaArgAsnLeuIleLeuIleIleSerArg : 363 !||||||||| !!|||||| |||! !||| !:!!|||||||||:!!! ! !! ! eAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIle 301909 : CGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATA : 301965 364 : SerAsnValValIleLysIleThrAlaGlyLysLeuValGlnLeuSerIleAlaThrP : 383 |||.!. ! ! |||:!!||||||||||||:!!:!!.!.||||||:!: !|||| SerGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrP 301966 : TCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACAT : 302025 384 : heSerAsp >>>> Target Intron 3 >>>> ValMetLysThrSerLeuVal : 392 |||||..! 82 bp |||:!!|||||||||:!!||| heSerSer++ ++ValValLysThrSerValVal 302026 : TCAGCTCTgt.........................agGTGGTGAAAACATCGGTGGTG : 302134 393 : TyrLeuAsnIleLeuArgThr : 399 |||||||||:!!||||||||| TyrLeuAsnLeuLeuArgThr 302135 : TACTTGAATTTACTGCGAACA : 302157 vulgar: CbirOr21 171 399 . KQ414889.1 300207 302157 + 339 M 71 213 G 2 0 M 18 54 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 70 210 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300208 302157 339 + . gene_id 15 ; sequence CbirOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300208 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300208 300476 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302157 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302157 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300208 302157 339 + . alignment_id 15 ; Query CbirOr21 ; Align 300208 172 213 ; Align 300421 245 54 ; Align 301588 264 210 ; Align 301878 334 156 ; Align 302116 386 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 326 Query range: 296 -> 400 Target range: 277371 -> 277839 297 : SerTrpAsnAsnIleAspIleLysGlyIleValProTyrIleIleValTyrIleSerM : 316 ..!|||::!:!!! !|||:!!:!! !!!:..! !!:!!.!!!!::!! !||||||| GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 317 : etThrPheAsnIlePheThrPheCysTyrIleGlyGluIleLeuThrGlnGln >>> : 334 || ||||||||||||||| ! ||||||||||||||||||||||||:!!||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 335 : > Target Intron 1 >>>> CysLysAsnIleGlyGluThrAlaTyrMetThrA : 345 72 bp ||||||!!.:!!||||||..!!.!|||||||||: ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 346 : spTrpTyrTyrLeuProHisLysThrAlaArgAsnLeuIleLeuIleIleSerArgSe : 364 !!||||||||||||||| !!||| ! !! !||||||:!!||||||||||||||||| snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 365 : rAsnValValIleLysIleThrAlaGlyLysLeuValGlnLeuSerIleAlaThrPhe : 383 |!:!:::|||||||||||||||||||||||||||:::|||:::|||:!: !|||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 384 : SerAsp >>>> Target Intron 2 >>>> ValMetLysThrSerLeuValTy : 393 .!!||| 84 bp |||!!:||||||!!!!!!...|| GlyAsp++ ++ValIleLysThrThrPheAlaTy 277703 : GGCGATgt.........................agGTAATAAAAACCACTTTCgcgta : 277816 394 : rLeuAsnIleLeuArgThrThr : 400 |||||||||||||||| !||| rLeuAsnIleLeuArgGlnThr 277817 : tttaaatattctacgCCAAACG : 277839 vulgar: CbirOr21 296 400 . KQ414889.1 277371 277839 + 326 M 37 111 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277839 326 + . gene_id 16 ; sequence CbirOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277839 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277839 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277839 326 + . alignment_id 16 ; Query CbirOr21 ; Align 277372 297 111 ; Align 277555 334 156 ; Align 277795 386 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 297 Query range: 296 -> 400 Target range: 272836 -> 273299 297 : SerTrpAsnAsnIleAspIleLysGlyIleValProTyrIleIleValTyrIleSerM : 316 ..!|||!.!:!! !|||.!!:!!.!!:!!..! !!|||.!!!!::!! !||||||| GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 317 : etThrPheAsnIlePheThrPheCysTyrIleGlyGluIleLeuThrGlnGln >>> : 334 ||||||||||||||||| ||||||||||||||||||||||||:!!::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 335 : > Target Intron 1 >>>> CysLysAsnIleGlyGluThrAlaTyrMetThrA : 345 70 bp ||||||...|||||||||..!!.!|||||||||: ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 346 : spTrpTyrTyrLeuProHisLysThrAlaArgAsnLeuIleLeuIleIleSerArgSe : 364 !!||||||||||||||| !||| ! !! !:!!|||||||||||||||||||||!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 365 : rAsnValValIleLysIleThrAlaGlyLysLeuValGlnLeuSerIleAlaThrPhe : 383 !!:!||||||||||||||||||||||||!:!:!!|||! :!!|||:!: !|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 384 : SerAsp >>>> Target Intron 2 >>>> ValMetLysThrSerLeuValTy : 393 .!!||| 81 bp |||||||||!:!:!!!!!!.!|| GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 394 : rLeuAsnIleLeuArgThrThr : 400 |||||||!!:|||||| !||| rLeuAsnMetLeuArgGlnThr 273277 : CTTAAATATGCTACGACAAACG : 273299 vulgar: CbirOr21 296 400 . KQ414889.1 272836 273299 + 297 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273299 297 + . gene_id 17 ; sequence CbirOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273299 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273299 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273299 297 + . alignment_id 17 ; Query CbirOr21 ; Align 272837 297 111 ; Align 273018 334 156 ; Align 273255 386 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 244 Query range: 106 -> 262 Target range: 304413 -> 304866 107 : MetGlnArgAspTrpGlnIleIleLysHisThrArgAspArgGluIleMetAlaArgA : 126 :!:...! !! !:::!! :!::!! ! !||||||||||||!!:||| !!:! LeuSerThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysT 304414 : CTCTCTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAAT : 304471 127 : snAlaGlnLeuGlyArgLeuValAlaGlyPheCysAlaValPheMetHisGlyGlyVa : 145 !!!.!|||:!!|||||| !:!!.!! !.!!||||||:!!||||||:!! !|||! yrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGl 304472 : ACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGG : 304528 146 : lPheSerTyrAsnIleValCysGlyMetThrThrValValValProIleGlyAspAsn : 164 ! !! !|||:!!! ||| !.!..!!|||! !..! ! ! !! ! !!||| yThrIleTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsn 304529 : CACCATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAAT : 304585 165 : ArgSerValGluMetIleGlnLeuProValProSerTyrSerLysPheIleAspAlaA : 184 |||!!!:!!:!! ! !||| ! !|||!!!|||||| !!..!!|||!.!! ArgThrIleLys------ProLeuValTyrProThrTyrSerAlaLeuPheAspValG 304586 : CGTACGATTAAA------CCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTC : 304639 185 : rgPheSerProAlaAsnGluIleValLeuMetThrGlnValLeuSerThrPheValVa : 203 :! |||||| ! !!|||:!:|||! !.!...!!!. !:!!!!! !!:!|||:! lnThrSerProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIl 304640 : AAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAAT : 304696 204 : lAsnSerThrThrValSerAlaCysSerLeuAlaAlaValPheAlaMetHisAlaCys : 222 ! !!|||! !|||!.!.!!||||||.!!|||||||||:!!||||||! ||||||||| eTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCys 304697 : TTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGT : 304753 223 : GlyGlnLeuAspIleLeuMetAlaArgLeuAsnArgLeuValGluGlyGluAspSerA : 242 ||||||:!!||||||:!!|||:!!||||||..! !|||||| :!!|||! GlyGlnIleAspIleValMetSerArgLeuGlyAspLeuVal---------AsnSerL 304754 : GGACAAATTGATATCGTTATGTCTCGATTGGGTGATCTTGTC---------AACAGCA : 304804 243 : rgThrSerGluSerLeuGlnArgArgLeuAlaAsnIleValAspHisHisLeuArgVa : 261 :! !|||.....!|||.!.!:!|||||| !.!.||||||!!:||||||||||||:! ysGluSerSerAspLeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIl 304805 : AAGAATCATCTGATTTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAAT : 304861 262 : lLeu : 262 !||| eLeu 304862 : TTTA : 304866 vulgar: CbirOr21 106 262 . KQ414889.1 304413 304866 + 244 M 62 186 G 2 0 M 66 198 G 3 0 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304414 304866 244 + . gene_id 18 ; sequence CbirOr21 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304414 304866 . + . KQ414889.1 exonerate:protein2genome:local exon 304414 304866 . + . insertions 0 ; deletions 5 KQ414889.1 exonerate:protein2genome:local similarity 304414 304866 244 + . alignment_id 18 ; Query CbirOr21 ; Align 304414 107 186 ; Align 304600 171 198 ; Align 304798 240 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 236 Query range: 296 -> 396 Target range: 286878 -> 287252 297 : SerTrpAsnAsnIleAspIleLysGlyIleValProTyrIleIleValTyrIleSerM : 316 ..!|||.!..!.! !!!:! !! !|||! :!! !!||| !! :!! :!!|||. GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerP 286879 : GAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTT : 286936 317 : etThrPheAsnIlePheThrPheCysTyrIleGlyGluIleLeuThrGlnGln >>> : 334 !.|||||||||:!!|||! !.!!|||||||||||||||||||||:!!:!!||| heThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286937 : TCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt... : 286992 335 : > Target Intron 1 >>>> CysLysAsnIleGlyGluThrAlaTyrMetThrA : 345 74 bp ||| !!!.:!!||| !:!!.!!||||||! !| ++CysLeuLysValGlyLeuSerThrTyrMetIleA 286993 : ......................agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCG : 287097 346 : spTrpTyrTyrLeuProHisLysThrAlaArgAsnLeuIleLeuIleIleSerArgSe : 364 |||||||| !|||||| |||||||||!:!..!||||||||||||.!!:!! !|| spTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSe 287098 : ACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTC : 287154 365 : rAsnValValIleLysIleThrAlaGlyLysLeuValGlnLeuSerIleAlaThrPhe : 383 |||| ! !||||||:!!||||||||||||:!!:!!.!.||||||:!!::!!:!||| rAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPhe 287155 : GAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTC : 287211 384 : SerAspValMetLysThrSerLeuValTyrLeuAsnIle : 396 !!!..!|||! ! ! !!:!||| !|||! !:!!:!: CysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 287212 : TGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 287252 vulgar: CbirOr21 296 396 . KQ414889.1 286878 287252 + 236 M 37 111 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286879 287252 236 + . gene_id 19 ; sequence CbirOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286879 287252 236 + . alignment_id 19 ; Query CbirOr21 ; Align 286879 297 111 ; Align 287064 334 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 212 Query range: 332 -> 401 Target range: 264723 -> 265010 333 : GlnCysLysAsnIleGlyGluThrAlaTyrMetThrAspTrpTyrTyrLeuProHisL : 352 |||||||||!!.:!!||||||..!!.!||||||:!!:!!|||||||||||||||:!!| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 353 : ysThrAlaArgAsnLeuIleLeuIleIleSerArgSerAsnValValIleLysIleTh : 371 || ! !! !:!!|||||||||||||||! !||||||!:!||||||.!!|||.!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 372 : rAlaGlyLysLeuValGlnLeuSerIleAlaThrPheSerAsp >>>> Target I : 386 ||||||||||:!!:!!!!.:!!|||!!: !|||||||||||| 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 387 : ntron 1 >>>> ValMetLysThrSerLeuValTyrLeuAsnIleLeuArgThrTh : 400 bp |||!!:|||:!!|||!!!..!|||||||||:!!|||||| !|| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArgGlnTh 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGCCAAAC : 265005 401 : rIle : 401 |!!: rMet 265006 : GATG : 265010 vulgar: CbirOr21 332 401 . KQ414889.1 264723 265010 + 212 M 53 159 5 0 2 I 0 76 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265010 212 + . gene_id 20 ; sequence CbirOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265010 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265010 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265010 212 + . alignment_id 20 ; Query CbirOr21 ; Align 264724 333 159 ; Align 264963 386 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 207 Query range: 296 -> 395 Target range: 291368 -> 292578 297 : SerTrpAsnAsnIleAspIleLysGlyIleValProTyrIleIleValTyrIleSerM : 316 ..!|||.!.!:!! !||| ! ||||||:!! !!|||:!!! !:!! !! !|||. GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 317 : etThrPheAsnIlePheThrPheCysTyrIleGlyGluIleLeuThrGlnGln >>> : 334 !.||||||||||||.!.! !|||||||||:!!||||||:!!||| ! !||| heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln++ 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAGgt... : 291482 335 : > Target Intron 1 >>>> CysLysAsnIleGlyGluThrAlaTyrMetThrA : 345 913 bp !!!...!.|||!.!.!..!!:!!||| |||! ++GlySerGluIleAlaHisAlaSerTyrAspThrG 291483 : ......................agGGTAGTGAAATCGCGCACGCTTCCTACGATACAG : 292426 346 : spTrpTyrTyrLeuProHisLysThrAlaArgAsnLeuIleLeuIleIleSerArgSe : 364 !:|||||| !!||||||...::!! !||||||:!!:!!:!!|||:!::!!:!!! !!! luTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIleTh 292427 : AATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAAC : 292483 365 : rAsnValValIleLysIleThrAlaGlyLysLeuValGlnLeuSerIleAlaThrPhe : 383 !!!. ! !||||||:!!||||||||||||:!! !! ||||||:!: !|||||| rLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPhe 292484 : GAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTT : 292540 384 : SerAspValMetLysThrSerLeuValTyrLeuAsn : 395 .!!! !||| :!!:!!!.!||||||! :!!:!! GlyAlaValArgGluSerLysLeuValLeuIleHis 292541 : GGCGCTGTACGTGAATCAAAACTAGTCTTGATACAC : 292578 vulgar: CbirOr21 296 395 . KQ414889.1 291368 292578 + 207 M 37 111 5 0 2 I 0 909 3 0 2 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 292578 207 + . gene_id 21 ; sequence CbirOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 292578 207 + . alignment_id 21 ; Query CbirOr21 ; Align 291369 297 111 ; Align 292393 334 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 198 Query range: 332 -> 392 Target range: 254271 -> 254451 333 : GlnCysLysAsnIleGlyGluThrAlaTyrMetThrAspTrpTyrTyrLeuProHisL : 352 |||||| !!!.:!!||||||..!!.!|||||||||||||||||||||||||||!!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 353 : ysThrAlaArgAsnLeuIleLeuIleIleSerArgSerAsnValValIleLysIleTh : 371 :!! ! !! !:!!|||||||||||||||!!!|||||||||||||||:!!:!!||||| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 372 : rAlaGlyLysLeuValGlnLeuSerIleAlaThrPheSerAspValMetLysThrSer : 390 ||||||||||::: ...:::|||:!! !||||||.!!||||||! :!!|||!:! rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 254443 391 : LeuVal : 392 |||||| LeuVal 254444 : CTTGTT : 254451 vulgar: CbirOr21 332 392 . KQ414889.1 254271 254451 + 198 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254451 198 + . gene_id 22 ; sequence CbirOr21 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254451 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254451 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254451 198 + . alignment_id 22 ; Query CbirOr21 ; Align 254272 333 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 197 Query range: 332 -> 391 Target range: 238625 -> 238802 333 : GlnCysLysAsnIleGlyGluThrAlaTyrMetThrAspTrpTyrTyrLeuProHisL : 352 |||||| !!!.:!!||||||..!!.!|||||||||||||||||||||||||||!!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 353 : ysThrAlaArgAsnLeuIleLeuIleIleSerArgSerAsnValValIleLysIleTh : 371 :!! ! !! !:!!|||||||||||||||!.!|||||||||||||||:!!|||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 372 : rAlaGlyLysLeuValGlnLeuSerIleAlaThrPheSerAspValMetLysThrSer : 390 ||||||||||:!!:!!!!.:!!|||:!! !||||||.!!||||||! :!!|||!:! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 391 : Leu : 391 ||| Leu 238798 : CTT : 238802 vulgar: CbirOr21 332 391 . KQ414889.1 238625 238802 + 197 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238802 197 + . gene_id 23 ; sequence CbirOr21 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238802 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238802 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238802 197 + . alignment_id 23 ; Query CbirOr21 ; Align 238626 333 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 194 Query range: 332 -> 392 Target range: 244655 -> 244835 333 : GlnCysLysAsnIleGlyGluThrAlaTyrMetThrAspTrpTyrTyrLeuProHisL : 352 |||||| !!!.:!!||||||..!!.!|||||||||||||||||||||||||||!!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 353 : ysThrAlaArgAsnLeuIleLeuIleIleSerArgSerAsnValValIleLysIleTh : 371 :!! ! !! !:!!|||||||||||||||!.!|||||||||:!!|||:!!:!!||||| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 372 : rAlaGlyLysLeuValGlnLeuSerIleAlaThrPheSerAspValMetLysThrSer : 390 ||||||||||:!!:!!!!.:!!|||:!! !||||||.!!||||||! :!!|||!.! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrLys 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAA : 244827 391 : LeuVal : 392 |||||| LeuVal 244828 : CTTGTT : 244835 vulgar: CbirOr21 332 392 . KQ414889.1 244655 244835 + 194 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244835 194 + . gene_id 24 ; sequence CbirOr21 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244835 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244835 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244835 194 + . alignment_id 24 ; Query CbirOr21 ; Align 244656 333 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 185 Query range: 288 -> 402 Target range: 305076 -> 305937 289 : MetLeuGlyTyrTyrThrIleThrSerTrpAsnAsnIleAspIleLysGlyIleValP : 308 .!.||| ||| !..!|||.!.!:!! !:!!! ! .!!:!!..! PheLeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrT 305077 : TTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAA : 305134 309 : roTyrIleIleValTyrIleSerMetThrPheAsnIlePheThrPheCysTyrIleGl : 327 !!|||! !:!::!! ||||||:!:|||||||||||||||! !!!.||||||||||| hrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGl 305135 : CATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGG : 305191 328 : yGluIleLeuThrGlnGlnCys{Ly} >>>> Target Intron 1 >>>> {s} : 335 ||||||||||! !:!!:!! {!.} 413 bp {.} yGluIleLeuMetGluLysVal{Se}-+ ++{r} 305192 : TGAGATTCTTATGGAAAAGGTG{ag}tt.........................ag{T} : 305630 336 : AsnIleGlyGluThrAlaTyrMetThrAspTrpTyrTyrLeuProHisLysThrAlaA : 355 !:!:!!||| !:!!..!!:!|||! !..!||||||:!!|||||| !|||||| !! SerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleH 305631 : AGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATAC : 305688 356 : rgAsnLeuIleLeuIleIleSerArgSerAsnValValIleLysIleThrAlaGlyLy : 374 .!..!|||||||||||||||:!!! !|||!:! ! ! !||||||!:!|||||||| isGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLy 305689 : ATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAA : 305745 375 : sLeuValGlnLeuSerIleAlaThrPhe >>>> Target Intron 2 >>>> S : 384 |:!!|||.!.||||||:!!:!!|||||| 112 bp sValValAspLeuSerLeuSerThrPhe+- ++- 305746 : AGTAGTTGATTTATCTTTATCCACATTTgg.........................ag- : 305887 385 : erAspValMetLysThrSerLeuValTyrLeuAsnIleLeuArgThrThrIleLeu : 402 |||:!!||||||||||||!.!||||||!:!.!!||||||||||||:!!:!! -----ValLeuLysThrSerLeuAlaTyrLeuSerPheLeuArgThrThrValIle 305888 : -----GTTCTGAAAACGTCATTAGCGTATTTAAGTTTCCTTCGGACTACCGTTATA : 305937 vulgar: CbirOr21 288 402 . KQ414889.1 305076 305937 + 185 M 46 138 S 0 2 5 0 2 I 0 409 3 0 2 S 1 1 M 48 144 5 0 2 I 0 108 3 0 2 G 2 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305077 305937 185 + . gene_id 25 ; sequence CbirOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305077 305216 . + . KQ414889.1 exonerate:protein2genome:local exon 305077 305216 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305217 305218 . + . intron_id 1 ; splice_site "tt" KQ414889.1 exonerate:protein2genome:local intron 305217 305629 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305628 305629 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305630 305774 . + . KQ414889.1 exonerate:protein2genome:local exon 305630 305774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305775 305776 . + . intron_id 2 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local intron 305775 305886 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 305885 305886 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305887 305937 . + . KQ414889.1 exonerate:protein2genome:local exon 305887 305937 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305077 305937 185 + . alignment_id 25 ; Query CbirOr21 ; Align 305077 289 138 ; Align 305631 336 144 ; Align 305887 386 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 181 Query range: 296 -> 392 Target range: 224323 -> 224676 297 : SerTrpAsnAsnIleAspIleLysGlyIleValProTyrIleIleValTyrIleSerM : 316 ...|||:::::: !!:!!! .!! ||| !!|||.!!|||:!! !!!:|||: GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 317 : etThrPheAsnIlePheThrPheCysTyrIleGlyGluIleLeuThrGlnGlnCysLy : 335 ::||||||||||||||| ||||||||||||||||||:!::!!.!!:!!||| || euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlnValLy 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggtgaa : 224438 336 : s{A} >>>> Target Intron 1 >>>> {sn}IleGlyGluThrAlaTyrMet : 343 |{!} 65 bp {!.}||||||::!..!:!!|||||| s{L}-+ +-{ys}IleGlyGlnValSerTyrMet 224439 : a{a}at.........................aa{aa}attggacaAGTGTCGTACATG : 224527 344 : ThrAspTrpTyrTyrLeuProHisLysThrAlaArgAsnLeuIleLeuIleIleSerA : 363 ! !||||||||| ||| !! !!.! ! !! ! !! !||||||||||||:!!! IleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaM 224528 : ATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGA : 224587 364 : rgSerAsnValValIleLysIleThrAlaGlyLysLeuValGlnLeuSerIleAlaTh : 382 !|||||| ! !||||||:!:|||||||||!!.:!!|||:!!|||!!!:!!.!!|| etSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrTh 224588 : TGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCAC : 224644 383 : rPheSerAspValMetLysThrSerLeuVal : 392 ||||.!!||||||! ! |||! ! !||| rPheGlyAspValSerIleThrIleThrVal 224645 : TTTCGGTGACGTAAGTATCACAATCACCGTC : 224676 vulgar: CbirOr21 296 392 . KQ414889.1 224323 224676 + 181 M 39 117 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224676 181 + . gene_id 26 ; sequence CbirOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224324 224441 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224441 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224442 224443 . + . intron_id 1 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local intron 224442 224506 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224505 224506 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 224507 224676 . + . KQ414889.1 exonerate:protein2genome:local exon 224507 224676 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224676 181 + . alignment_id 26 ; Query CbirOr21 ; Align 224324 297 117 ; Align 224509 337 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 331 -> 386 Target range: 283273 -> 283438 332 : GlnGlnCysLysAsnIleGlyGluThrAlaTyrMetThrAspTrpTyrTyrLeuProH : 351 !:!|||||||||!!.:!!||||||..!!.!|||||||||:!!! !!:!||||||||| ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 352 : isLysThrAlaArgAsnLeuIleLeuIleIleSerArgSerAsnValValIleLysIl : 370 !!||| ! !! !||||||:!!||||||||||||||||||!:!:::||||||||||| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 371 : eThrAlaGlyLysLeuValGlnLeuSerIleAlaThrPheSerAspVal : 386 |||||||...||||||:::|||::!||| !||||||..!|||||| eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspVal 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTA : 283438 vulgar: CbirOr21 331 386 . KQ414889.1 283273 283438 + 175 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283438 175 + . gene_id 27 ; sequence CbirOr21 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283438 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283438 175 + . alignment_id 27 ; Query CbirOr21 ; Align 283274 332 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 163 Query range: 336 -> 401 Target range: 206251 -> 207607 337 : IleGlyGluThrAlaTyrMetThrAspTrpTyrTyrLeuProHisLysThrAlaArgA : 356 :!:||| !|||:!!! !! !..!:!!|||||| !||||||:!!!:! !||||||: ValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgS 206252 : GTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCT : 206309 357 : snLeuIleLeuIleIleSerArgSerAsnValValIleLysIleThrAlaGlyLysLe : 375 :!:!!||||||||||||:!!! !|||||| ! !||||||:!!||||||||||||:! erMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMe 206310 : CTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAAT : 206366 376 : uValGlnLeuSerIleAlaThrPheSerAsp >>>> Target Intron 1 >>>> : 386 ! !!:!!:!!|||:!!|||!:!|||!!!||| 1161 bp tPheGluMetSerLeuAlaSerPheThrAsp++ 206367 : GTTCGAAATGTCTTTAGCTAGTTTCACCGATgt......................... : 206401 387 : ValMetLysThrSerLeuValTyrLeuAsnIleLeuArgThrThrIle : 401 |||||||||..!:!!:!!! !|||!!!|||||||||||| !..!:!! ++ValMetLysValAlaMetGlyTyrPheAsnIleLeuArgGluValVal 206402 : agGTAATGAAGGTGGCGATGGGATACTTCAACATACTCCGTGAAGTCGTA : 207607 vulgar: CbirOr21 336 401 . KQ414889.1 206251 207607 + 163 M 49 147 5 0 2 I 0 1157 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206252 207607 163 + . gene_id 28 ; sequence CbirOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206252 206398 . + . KQ414889.1 exonerate:protein2genome:local exon 206252 206398 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206399 206400 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206399 207559 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 207558 207559 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 207560 207607 . + . KQ414889.1 exonerate:protein2genome:local exon 207560 207607 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206252 207607 163 + . alignment_id 28 ; Query CbirOr21 ; Align 206252 337 147 ; Align 207560 386 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 179 -> 238 Target range: 202712 -> 202889 180 : PheIleAspAlaArgPheSerProAlaAsnGluIleValLeuMetThrGlnValLeuS : 199 .!!||||||!.!|||!:!||||||!.!||||||||| !!!!! !! !!:!:!!:!!: IleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleValA 202713 : ATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAG : 202770 200 : erThrPheValValAsnSerThrThrValSerAlaCysSerLeuAlaAlaValPheAl : 218 !!..!.!!:!!:!!:!!.!!..!||||||.!!||||||!!!|||.!!|||:!!||||| laValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAl 202771 : CTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGC : 202827 219 : aMetHisAlaCysGlyGlnLeuAspIleLeuMetAlaArgLeuAsnArgLeuValGlu : 237 |:!:|||! !|||||||||:!!|||:!!||||||||| !!|||.!.!.!|||:!!!!: aValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMetAsp 202828 : GGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGAT : 202884 238 : Gly : 238 ||| Gly 202885 : GGT : 202889 vulgar: CbirOr21 179 238 . KQ414889.1 202712 202889 + 157 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202713 202889 157 + . gene_id 29 ; sequence CbirOr21 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202713 202889 . + . KQ414889.1 exonerate:protein2genome:local exon 202713 202889 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202713 202889 157 + . alignment_id 29 ; Query CbirOr21 ; Align 202713 180 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 328 -> 386 Target range: 214848 -> 215022 329 : IleLeuThrGlnGlnCysLysAsnIleGlyGluThrAlaTyrMetThrAspTrpTyrT : 348 |||:!! !||||||||||||!!.:!!||||||..!:!!||||||! !!!:|||||| IleMetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrA 214849 : ATTATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACC : 214906 349 : yrLeuProHisLysThrAlaArgAsnLeuIleLeuIleIleSerArgSerAsnValVa : 367 |||||| !!!.! ! !! ! !! !|||||||||!!::!!! !|||||| ! rgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSe 214907 : GATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATC : 214963 368 : lIleLysIleThrAlaGlyLysLeuValGlnLeuSerIleAlaThrPheSerAspVal : 386 !:!!|||.!!|||||||||!!.:!!|||:!!|||||||||::!|||||||||..!||| rValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214964 : CGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215020 vulgar: CbirOr21 328 386 . KQ414889.1 214848 215022 + 156 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214849 215022 156 + . gene_id 30 ; sequence CbirOr21 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214849 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214849 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214849 215022 156 + . alignment_id 30 ; Query CbirOr21 ; Align 214849 329 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 262 -> 333 Target range: 263671 -> 264648 263 : SerPheIleAlaArgIleGluAspValMetHisGlnIleCysLeuValGluLeuLeuG : 282 |||||||||! !||||||:!!:!!|||||| ! !||||||!!!|||||||||!!! SerPheIleAspArgIleLysAsnValMetSerThrIleCysPheValGluLeuPheL 263672 : AGTTTCATAGATCGTATTAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCA : 263729 283 : lyCysThrPheAsnLeuCys{Me} >>>> Target Intron 1 >>>> {t}Le : 290 !..!|||.!.:!!:!!|||{!!} 764 bp {:}:! ysAlaThrLeuAspIleCys{Il}+- +-{e}Il 263730 : AGGCTACGCTGGATATATGC{AT}gc.........................aa{T}AT : 264517 291 : uGlyTyrTyrThrIleThrSerTrpAsnAsnIleAspIleLysGlyIleValProTyr : 309 ! ! ! !!..!.!! !..!|||.!.!:! ||||||:::...:::..! !!||| eThrIleAspValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyr 264518 : AACAATTGACGTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATAT : 264574 310 : IleIleValTyrIleSerMetThrPheAsnIlePheThrPheCysTyrIleGlyGluI : 329 .!!!!::!! ||||||||| ! !||||||||| !.!.|||||||||||||||| PheMetIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluI 264575 : TTCATGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGA : 264634 330 : leLeuThrGlnGln : 333 ||||||||:!!||| leLeuThrGluGln 264635 : TATTGACTGAGcag : 264648 vulgar: CbirOr21 262 333 . KQ414889.1 263671 264648 + 127 M 26 78 S 0 2 5 0 2 I 0 760 3 0 2 S 1 1 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 263672 264648 127 + . gene_id 31 ; sequence CbirOr21 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 263672 263751 . + . KQ414889.1 exonerate:protein2genome:local exon 263672 263751 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263752 263753 . + . intron_id 1 ; splice_site "GC" KQ414889.1 exonerate:protein2genome:local intron 263752 264515 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264514 264515 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 264516 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264516 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 263672 264648 127 + . alignment_id 31 ; Query CbirOr21 ; Align 263672 263 78 ; Align 264517 290 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 296 -> 333 Target range: 214629 -> 214740 297 : SerTrpAsnAsnIleAspIleLysGlyIleValProTyrIleIleValTyrIleSerM : 316 ..!||||||:::! !:!!:!!! ! !! !||| !!|||:!::!::!!|||||||||: GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValValLeuTyrIleSerL 214630 : gAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGGTGTTGTATATCTCTC : 214687 317 : etThrPheAsnIlePheThrPheCysTyrIleGlyGluIleLeuThrGlnGln : 333 ::||||||||||||||| ||||||||||||||||||:!!:!!:!!:!!||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValSerGluGln 214688 : tcactttcaatattttcatattttgttaCATAGGCGAGCTTGTGTCTGAACAG : 214740 vulgar: CbirOr21 296 333 . KQ414889.1 214629 214740 + 122 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214630 214740 122 + . gene_id 32 ; sequence CbirOr21 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214630 214740 122 + . alignment_id 32 ; Query CbirOr21 ; Align 214630 297 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 327 -> 386 Target range: 196633 -> 196810 328 : GluIleLeuThrGlnGlnCysLysAsnIleGlyGluThrAlaTyrMetThrAspTrpT : 347 ::::!!!!!..!:!!:!! !!:!!!..:!!|||||||||:!!|||.!.! ! |||| AspLeuPheValGluLysSerGluArgValGlyGluThrSerTyrPheMetProTrpT 196634 : gaTTTATTCGTTGAAAAGAGCGAAAGAGTAGGCGAAACGTCGTACTTCATGCCGTGGT : 196691 348 : yrTyrLeuProHisLysThrAlaArgAsnLeuIleLeuIleIleSerArgSerAsnVa : 366 || !!|||||| !! ! !|||!:!|||:!!! ! !|||||| !|||:!!!:! yrAspLeuProAspAspLeuAlaLysAsnIleArgThrIleIleLeuArgAlaSerHi 196692 : ACGATCTTCCGGACGATTTAGCCAAGAATATAAGAACGATCATACTAAGAGCCAGTCA : 196748 367 : lValIleLysIleThrAlaGlyLysLeuValGlnLeuSerIleAlaThrPheSerAsp : 385 ! ! !!..:!::!!!.!!.!|||||| !!.!.||||||:!! !.!!|||!!!||| sProSerSerLeuSerGlyAlaLysLeuPheAspLeuSerLeuGlnAlaPheCysAsp 196749 : TCCGTCAAGTTTGTCTGGCGCCAAGTTGTTCGATCTTTCGCTTCAAGCATTTTGCGAC : 196805 386 : Val : 386 ||| Val 196806 : GTG : 196810 vulgar: CbirOr21 327 386 . KQ414889.1 196633 196810 + 106 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 196634 196810 106 + . gene_id 33 ; sequence CbirOr21 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 196634 196810 . + . KQ414889.1 exonerate:protein2genome:local exon 196634 196810 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 196634 196810 106 + . alignment_id 33 ; Query CbirOr21 ; Align 196634 328 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 524 Query range: 6 -> 396 Target range: 217156 -> 219797 7 : TyrGluHisAspIleLysTyrThrPheGluMetAsnArgPheLeuLeuArgMetLeuG : 26 |||||| :::|||... ::!.!!:!! !||||||!::||||||!:! !:!!| TyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetG 217157 : tacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGG : 217214 27 : lyMetTrpProValAlaSerThrLysPheProLeuPheGlyThrValThrThrIleVa : 45 ||:!:|||||| !:!! !!|||! !! !! ! !!! !:!! ! !! !:! lyLeuTrpProAsnSerArgThrThr---ThrArgSerArgLysIleLeuTyrLysLe 217215 : GTCTTTGGCCAAACTCACGTACCACC---ACCAGATCCCGAAAAATCCTCTACAAACT : 217268 46 : lLeuValThrIleCysPheAlaLeuLeuLeuPheGluLeuValProSerMetLeuTyr : 64 !:!! !.!!:!!|||!:!!.!|||:!! !||| !!!!||||||!!! :!!||| uIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyr 217269 : GATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTAC : 217325 65 : IlePheMetValLeuLysAspThrArgArgArgIleAsnValIleGlyAsnProLeuP : 84 :!:|||:!:! !:!!:!!||| ! ! !!:!:!:!!.:!!.!!||| !:!!| ValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIleP 217326 : GTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCT : 217385 85 : heThrThrValAlaIleIleLysTyrGlyPheValValLeuTyrLysAsnGlnValLy : 103 || !..!:!!|||.!!:!!|||||| !! !:!!:!!:!!:!!||| .!.:!!:: heCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleAr 217386 : TCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCG : 217442 104 : sAspCysLeuMetAlaValAspLysAspTrpArgAsnValValGluSerAsnAspArg : 122 :!!:|||:!!! !:!!!!:::!||||||||||||||| ! ..!!!.|||||| gGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArg 217443 : CGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGG : 217499 123 : ThrSerMetIleAsnAsnValLysIleSerArgArgLeuLeuAlaMetCysAlaIleP : 142 !:!!|||||| |||!.!!!..!!.!!|||!:!|||:!! !:!:|||.!!.!!| GluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPheP 217500 : GAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCT : 217559 143 : heValTyrLeuThrGlyValGlyTrpArgIleIleIleProLeuSerLysGlyLysIl : 161 ||:!!||| ! ||| ::: ||| !||||||:!!||| !|||!:!|| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIl 217560 : TCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAAT : 217616 162 : eValThrAlaGlu<->AsnValThrIleArgValLeuProCysLeuAlaTyrPheVal : 179 |:!!:!!! !.!. |||:!!|||.!!! ! !||| !! !! ! ! ! eLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyr 217617 : TCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTAT : 217673 180 : ValPheAspValGlnArgSerProAlaTyrGluIleIlePheValValGlnPhePheS : 199 :!!.!!|||..!!:: !!!!|||.!! !!||||||:!:||| !!:!!|||!!..!!: IleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleA 217674 : ATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCG : 217733 200 : erGlyPheMetLysTyrThrIleThrValAlaIlePheGlyPheValThrLeuCysGl : 218 !!||| !:!!! !:!! !|||||| !||| !! !.!!!!.!.!.!! !! !!. laGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAl 217734 : CTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGC : 217790 219 : yMetHisIleCysAlaGlnLeuAsnIleLeuAlaThrLeuMetAsnAsnPheValAsn : 237 !:!:||| !|||!.!|||:!!.!.:!:||| !!.!! !:!!.!.:!!!!.:!!:!! aValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAsp 217791 : GGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGAC : 217847 238 : <-><->GluHisHisLeuGlySerThrHisLysLysLeuValValIleValLysHisG : 255 ! ! !! !! !!!!..! !! !:!:!!!.! !||||||!..!!.! GlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnH 217848 : GGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAAC : 217907 256 : lnValLysThrLeu{Gl} >>>> Target Intron 1 >>>> {n}PheLeuGl : 263 !.|||::!! !|||{:!} 1229 bp {!}|||||| isValArgIleLeu{Ly}++ ++{s}PheLeuTh 217908 : ACGTTCGGATATTA{AA}gt.........................ag{a}tttttgaC : 219160 264 : uLeuValGlnSerThrThrGlnTyrProSerLeuIleGluIleLeuSerSerThrLeu : 282 !|||..!:!!!!!||| !||| ! !|||!!! !|||.!!|||.!!!!!|||:!! rLeuThrGluArgThrLeuGlnGlnIleSerPheAlaGluPheLeuGlyCysThrMet 219161 : GCTCACAGAGAGAACCCTCCAGCAAATCTCTTTCGCTGAATTTCTAGGATGCACCATG : 219217 283 : LeuIleCysIleValGlyTyrTyrIleLeuLeu >>>> Target Intron 2 >> : 294 !||||||:!!|||||||||||||||:!!:!! 76 bp AspIleCysLeuValGlyTyrTyrIleIleVal++ 219218 : GACATATGTCTCGTTGGATATTACATTATCGTGgt....................... : 219255 295 : >> TyrTrpGlyThrGlnAsnThrAlaIleLeuPheThrTyrSerIleAlaMetLeu : 311 ! ||| !:!!.!.:!!..!.!!! ! ! ! ||||||! !||| !:!::!! ++GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIle 219256 : ..agGAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATA : 219380 312 : ThrPheCysPheAsnIlePheIlePheCysTyrMetGlyGluGlnValIleGluGln : 331 :!!.!. ||||||||||||||||||||||||!!:|||||| ||| !|||||| SerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln+ 219381 : TCCCTcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAgg : 219440 332 : >>>> Target Intron 3 >>>> GlyGluLysIleAlaLeuThrLeuCysThr : 340 73 bp ! ...||||||... !! !! ! + ++CysArgLysIleGlyGluMetSerTyrMet 219441 : t.........................agTGtaggaaaattggagaaatgtCGTACATG : 219540 341 : LeuGluTrpTyrArgLeuProAsnAlaGlnAlaArgAlaLeuIleLeuIleMetAlaM : 360 :!!||||||||||||||| !!... !:!! !! ! ! !:!!|||! !!!:|||| IleGluTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaM 219541 : ATCGAATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTA : 219600 361 : etSerAsnSerProValLysLeuGlnGlyGlyLysPheIleAspLeuSerLeuArgTh : 379 ||||||||||| !!:!!|||||| !!.!|||!!..!.:!!!!:||||||:!!!!!|| etSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerTh 219601 : TGTCGAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCAC : 219657 380 : rPheGlyThr >>>> Target Intron 4 >>>> ValIleLysMetAlaLeuT : 389 |||| ! ! 87 bp |||:!!|||! |||:!!| rPheThrAsp++ ++ValValLysThrAlaValT 219658 : TTTTACCGACgt.........................agGTCGTTAAGACTGCAGTCA : 219774 390 : hrTyrLeuAsnLeuLeuArgThr : 396 ||!:!||||||:!!||||||||| hrPheLeuAsnValLeuArgThr 219775 : CGTTTCTGAATGTACTACGAACA : 219797 vulgar: CbirOr10 6 396 . KQ414889.1 217156 219797 + 524 M 28 84 G 1 0 M 130 390 G 0 3 M 72 216 G 0 6 M 22 66 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 37 111 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 83 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217157 219797 524 + . gene_id 1 ; sequence CbirOr10 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217157 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217157 217923 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219668 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219668 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219669 219670 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219669 219755 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 219754 219755 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219756 219797 . + . KQ414889.1 exonerate:protein2genome:local exon 219756 219797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217157 219797 524 + . alignment_id 1 ; Query CbirOr10 ; Align 217157 7 84 ; Align 217241 36 390 ; Align 217634 166 216 ; Align 217856 238 66 ; Align 219154 261 99 ; Align 219329 294 111 ; Align 219513 331 156 ; Align 219756 383 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 479 Query range: 7 -> 383 Target range: 204221 -> 206401 8 : GluHisAspIleLysTyrThrPheGluMetAsnArgPheLeuLeuArgMetLeuGlyM : 27 |||.!.|||:!:!:!|||.!! ....!. !:! :!!||| !!!!::!!||| GluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyA 204222 : GAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTG : 204279 28 : etTrpProValAlaSerThrLysPheProLeuPheGlyThrValThrThrIleValLe : 46 !||||||:!! !! !!.!...! !|||!!! !! !||| ! !|||! !! laTrpProIleProValAsnSerSerProPheThrArgLeuValArgArgIleGluHi 204280 : CGTGGCCGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACA : 204336 47 : uValThrIleCysPheAlaLeuLeuLeuPheGluLeuValProSerMetLeuTyrIle : 65 !|||..!! ! ||| ......|||.!. :!!||||||.!!:!:||||||:!: sValValThrTyrPheLeuPhePheLeuMet---IleValProGlyLeuLeuTyrVal 204337 : CGTAGTCACCtatttcctcttctttctgaTG---ATCGTACCTGGCCTCTTGTACGTG : 204390 66 : PheMetValLeuLysAspThrArgArgArgIleAsnValIleGlyAsnProLeuPheT : 85 |||:!! ! !|||:!! !!:!! !|||:!:!!.:!!:!!||| !:!! ! PheLeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnC 204391 : TTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACT : 204450 86 : hrThrValAlaIleIleLysTyrGlyPheValValLeuTyrLysAsnGlnValLysAs : 104 !!:!:!! !.!!.!!||||||..! !!:!!:!!! ! ! :!!:!!:!!:!! ! ysSerIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLy 204451 : GCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAA : 204507 105 : pCysLeuMetAlaValAspLysAspTrpArgAsnValValGluSerAsnAspArgThr : 123 !!|||! .!!:!! :::||||||! !.!.!.!..!!!:..!||| ||| ! sSerLeuAsnThrIleArgArgAspTrpIleGluAlaThrAspGluAsn---ArgLeu 204508 : GAGTTTGAACACCATCAGACGCGACTGGATAGAGGCTACGGATGAAAAT---CGGTTG : 204561 124 : SerMetIleAsnAsnValLysIleSerArgArgLeuLeuAlaMetCysAlaIlePheV : 143 ! !.!. !:::!!.!.!||||||.!!||||||:!!||| !!!:...||| ! !: IlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrM 204562 : ATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTA : 204621 144 : alTyrLeuThrGlyValGlyTrpArgIleIleIleProLeuSerLysGlyLysIleVa : 162 !!||| ! !|||:!! !!!::|||! |||:!!||||||! !!:!|||! !||||| etTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleVa 204622 : TGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGT : 204678 163 : lThrAlaGluAsnValThrIleArgValLeuProCysLeuAlaTyrPheValValPhe : 181 |||| !!!!:||||||||||||||| !|||||||||! !!.!||||||||| ||| lThrProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePhe 204679 : AACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttcttt : 204735 182 : AspValGlnArgSerProAlaTyrGluIleIlePheValValGlnPhePheSerGlyP : 201 :::! !|||||||||||| !|||||||||:!!|||:!!:!!|||.!!.!.:!!|||| AsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyP 204736 : aacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTT : 204795 202 : heMetLysTyrThrIleThrValAlaIlePheGlyPheValThrLeuCysGlyMetHi : 220 ||:!:! |||.!!:!!! ! !!.!! !! !|||.!. !.!!|||! !! !:!:|| heValThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHi 204796 : TTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCA : 204852 221 : sIleCysAlaGlnLeuAsnIleLeuAlaThrLeuMetAsnAsnPheValAsnGluHis : 239 | |||::!..!|||!..||||||!.!!.! !|||||| .!!|||:!!:!! sAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAla 204853 : CGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCG : 204909 240 : HisLeuGlySerThr<-><->HisLysLysLeuValValIleValLysHisGlnValL : 257 !!:!! !..!||| |||!:!|||:!!!.!! !||||||:!!:!!|||..!| AspMetThrGluThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrL 204910 : GACATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGA : 204969 258 : ysThrLeu{Gl} >>>> Target Intron 1 >>>> {n}PheLeuGluLeuVa : 265 ||! ! !{::} 1055 bp {!} :!!! !!!! ysIleLys{Ar}++ ++{g}ThrIleValPhe** 204970 : AGATAAAG{AG}gt.........................ag{G}ACGATCGTGTTTTA : 206048 266 : lGlnSerThrThrGlnTyrProSerLeuIleGluIleLeuSerSerThrLeuLeuIle : 284 !:!!!!! !!.!.!. !! !!!!! !:!! !:!:! !! !!!! !! !:!! ! *GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSer 206049 : GGAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCT : 206105 285 : CysIleValGlyTyrTyrIleLeuLeuTyrTrpGlyThrGlnAsnThrAlaIleLeuP : 304 |||! ! !! !! !!:!||||||! !||| ||| !! !! !! ! !:!! CysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGlnValA 206106 : TGTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAGTGC : 206165 305 : heThrTyrSerIleAlaMetLeuThrPheCysPheAsnIlePheIlePheCysTyrMe : 323 ! !||| :!!:!!||| ! ! ! |||... !! !||| rgAspTyr---ValSerMetLysTyrValAspSerLeuAspPhePheAsnSerTyr** 206166 : GTGATTAC---GTATCAATGAAGTACGTGGattctttggatttttttaaCTCTTACTA : 206219 324 : tGlyGluGlnValIleGluGlnGlyGluLysIleAlaLeuThrLeuCysThrLeuGlu : 342 ! ! ! ! !.!! !!|||..!.!. :!:!.!||||||! !||||||:!!.!. *LysTyrTyrHisPhe***GlnAsnHisValValGlyLeuThrSerCysThrValAsn 206220 : GAAGTATTACCATTTTTAACAGAACCACGTCGTGGGATTGACATCTTGCACGGTGAAT : 206276 343 : TrpTyrArgLeuProAsnAlaGlnAlaArgAlaLeuIleLeuIleMetAlaMetSerA : 362 |||||||||||||||||| !!!.||||||:!!:!!|||||||||!!:|||||||||| TrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSerA 206277 : TGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTCTA : 206336 363 : snSerProValLysLeuGlnGlyGlyLysPheIleAspLeuSerLeuArgThrPheGl : 381 ||! !|||:!!|||||| !!.!||||||.!..!!!!::!!|||||| !!:!||| snTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPheTh 206337 : ATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTCAC : 206393 382 : yThrVal : 383 ! !||| rAspVal 206394 : CGATGTA : 206401 vulgar: CbirOr10 7 383 . KQ414889.1 204221 206401 + 479 M 49 147 G 1 0 M 63 189 G 1 0 M 123 369 G 0 6 M 15 45 S 0 2 5 0 2 I 0 1051 3 0 2 S 1 1 M 46 138 G 1 0 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204222 206401 479 + . gene_id 2 ; sequence CbirOr10 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 204222 204979 . + . KQ414889.1 exonerate:protein2genome:local exon 204222 204979 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 204980 204981 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 204980 206034 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206033 206034 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206035 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206035 206401 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 204222 206401 479 + . alignment_id 2 ; Query CbirOr10 ; Align 204222 8 147 ; Align 204369 58 189 ; Align 204558 122 369 ; Align 204933 245 45 ; Align 206036 261 138 ; Align 206174 308 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 339 Query range: 2 -> 234 Target range: 289705 -> 290398 3 : AlaAsnArgTyrTyrGluHisAspIleLysTyrThrPheGluMetAsnArgPheLeuL : 22 :!!||| ! !|||||| ||||||:::||||||||||||:!: !!.!!:::!!| SerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleL 289706 : TCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCT : 289763 23 : euArgMetLeuGlyMetTrpProValAlaSerThrLysPheProLeuPheGlyThrVa : 41 ||!:! !:!!||||||!::||| !!!.!! !!:!::: ! ! !! ! !.. euLysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgTh 289764 : TGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAAC : 289820 42 : lThrThrIleValLeuValThrIleCysPheAlaLeuLeuLeuPheGluLeuValPro : 60 !.!!:!!:!::!!|||:!! !:!!|||! !:!!:!!|||! !||| :!!|||||| rAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValPro 289821 : GGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCG : 289877 61 : SerMetLeuTyrIlePheMetValLeuLysAspThrArgArgArgIleAsnValIleG : 80 ! !! ! !:!!:!!.!..!. ! !!!.|||! !!.!! ! !:!!!!. !:!!| PheSerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuG 289878 : TTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCG : 289937 81 : lyAsnProLeuPheThrThrValAlaIleIleLysTyrGlyPheValValLeuTyrLy : 99 || ! !||| ! !..!.!!.!!.!!|||||| !!!:! !! !:!! ! lyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGl 289938 : GACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGG : 289994 100 : sAsnGlnValLysAspCysLeuMetAlaValAspLysAspTrpArgAsnValValGlu : 118 ::: !:!! !|||:!!! !:!!!!:!:!||||||!:!! :!! !!!: ySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAsp 289995 : TTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGAC : 290051 119 : SerAsnAspArgThrSerMetIleAsnAsnValLysIleSerArgArgLeuLeuAlaM : 138 ..!:!! !!|||..!! !|||:!!!.. !!|||! !!!:||||||!.!|||:!! !: GluAspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysL 290052 : GAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAAC : 290111 139 : etCysAlaIlePheValTyrLeuThrGlyValGlyTrpArgIleIleIleProLeuSe : 157 !!||||||||||||:!!|||:!! !|||:!!..!!::!.!! !:!!|||||||||! euCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPh 290112 : TGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTT : 290168 158 : rLysGlyLysIleValThrAlaGluAsnValThrIleArgValLeuProCysLeuAla : 176 !..! !|||! !|||!.!!.! ||||||||||||||| !||| !!! !! !!.! eSerLysLysSerValAsnGly---AsnValThrIleArgProLeuThrTyrProGly 290169 : CTCGAAGAAGAGCGTGAACGGT---AACGTGACTATCAGACCTCTAACTTATCCCGGT : 290222 177 : TyrPheValValPheAspValGlnArgSerProAlaTyrGluIleIlePheValValG : 196 ||| ! ! !!||||||||||||!:!||||||||||||||||||:!!||| !:!!! TyrGluGluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetH 290223 : TACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGC : 290282 197 : lnPhePheSerGlyPheMetLysTyrThrIleThrValAlaIlePheGlyPheValTh : 215 !.! ! !!! !! !.!.!!:! ! !.!||||||:!!||| !:!.!!!!...!|| isCysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrTh 290283 : ACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGAC : 290339 216 : rLeuCysGlyMetHisIleCysAlaGlnLeuAsnIleLeuAlaThrLeuMetAsnAsn : 234 |:!!! !!.!! |||! !|||!.!|||:!!!!.|||! !.!!|||! !:!!.!.:!! rIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAsp 290340 : GATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGAT : 290396 vulgar: CbirOr10 2 234 . KQ414889.1 289705 290398 + 339 M 162 486 G 1 0 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289706 290398 339 + . gene_id 3 ; sequence CbirOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289706 290398 . + . KQ414889.1 exonerate:protein2genome:local exon 289706 290398 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 289706 290398 339 + . alignment_id 3 ; Query CbirOr10 ; Align 289706 3 486 ; Align 290192 166 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 273 Query range: 112 -> 292 Target range: 304425 -> 305035 113 : TrpArgAsnValValGluSerAsnAspArgThrSerMetIleAsnAsnValLysIleS : 132 !::..!.!.|||! !... !!..|||||| !! !|||:!!!!. !!! !:!!!!:. TyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetG 304426 : TATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGG : 304483 133 : erArgArgLeuLeuAlaMetCysAlaIlePheValTyrLeuThrGlyValGlyTrpAr : 151 !!|||!.!||| ! !!!:||||||||||||:!!||| ! !|||..! !!::!. lyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHi 304484 : GTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCA : 304540 152 : gIleIleIleProLeuSerLysGlyLysIleValThrAlaGluAsnValThrIleArg : 170 !! :!!!!:! !!!!:!!! |||! ! !||| !! ! ! ||| !||||||!:! sThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgThrIleLys 304541 : CACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAA : 304597 171 : ValLeuProCysLeuAlaTyrPheValValPheAspValGlnArgSerProAlaTyrG : 190 !||| !! !! !.!!||| !!.!:!!||||||||||||! !|||||| !|||| ProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIleTyrG 304598 : CCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACG : 304657 191 : luIleIlePheValValGlnPhePheSerGlyPheMetLysTyrThrIleThrValAl : 209 ||:!::!!!:! !!|||!!.! !.!.!!!|||!:!:!:! |||:!!||||||!.!!. luLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThrAlaGl 304658 : AATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGG : 304714 210 : aIlePheGlyPheValThrLeuCysGlyMetHisIleCysAlaGlnLeuAsnIleLeu : 228 ! !! !|||!!.!.!.!!|||! !!.!! ||| !|||!.!|||:!!:!!|||:!! yAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleVal 304715 : TGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTT : 304771 229 : AlaThrLeuMetAsnAsnPheValAsnGluHisHisLeuGlySerThrHisLysLysL : 248 !:!!! !:!!..!:!!.!!||||||... ! .!.! !..!..! ! !!|||::!| MetSerArgLeuGlyAspLeuValAsnSerLysGluSerSerAspLeuAspLysArgL 304772 : ATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCATCTGATTTAGATAAACGAT : 304831 249 : euValValIleValLysHisGlnValLysThrLeu{Gl} >>>> Target Intro : 260 ||:!!! !||||||:!!|||!!.:!!::!! !|||{::} 70 bp euIleGluIleValGluHisHisLeuArgIleLeu{Ar}++ 304832 : TAATAGAAATTGTTGAGCATCATTTGCGAATTTTA{AG}gt................. : 304871 261 : n 1 >>>> {n}PheLeuGluLeuValGlnSerThrThrGlnTyrProSerLeuIle : 275 {!}|||! !! !:!!||||||!!!..! !||| ! !!!!!!!:!: ++{g}PheSerAlaIleValGlnThrValLeuGlnGluValCysPheLeu 304872 : ........ag{A}TTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTTCTTG : 304982 276 : GluIleLeuSerSerThrLeuLeuIleCysIleValGlyTyrTyrIleLeu : 292 |||.!!:!!.!!||||||||||||||||||:!!:!!! !|||||| !:!! GluPheIleGlySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysIle 304983 : GAATTCATTGGTTCTACCTTACTGATATGTCTACTTGAATACTACTGTATA : 305035 vulgar: CbirOr10 112 292 . KQ414889.1 304425 305035 + 273 M 147 441 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304426 305035 273 + . gene_id 4 ; sequence CbirOr10 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 304426 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304426 304868 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305035 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305035 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304426 305035 273 + . alignment_id 4 ; Query CbirOr10 ; Align 304426 113 441 ; Align 304940 261 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 257 Query range: 259 -> 383 Target range: 214459 -> 215022 260 : GlnPheLeuGluLeuValGlnSerThrThrGlnTyrProSerLeuIleGluIleLeuS : 279 ::!|||||||||||||||:!!!.!.!! !!:! ! !|||!!! !|||:!!||| ArgPheLeuGluLeuValGluLysAlaLeuArgGlnValSerPheAlaGluLeuLeuV 214460 : AGATTCTTAGAGCTCGTGGAGAAAGCACTTCGGCAAGTATCTTTCGCTGAATTATTAG : 214517 280 : erSerThrLeuLeuIleCysIleValGlyTyrTyrIleLeuLeu >>>> Target : 294 !!!!|||:!! !:!!|||:!!|||||||||||||||:!! ! 68 alCysThrValAsnLeuCysLeuValGlyTyrTyrIleIleThr++ 214518 : TATGCACGGTGAATCTCTGTCTCGTTGGATATTACATAATAACGgt............ : 214564 295 : Intron 1 >>>> TyrTrpGlyThrGlnAsnThrAlaIleLeuPheThrTyrSerI : 308 bp ! |||..!:!!.!.||| !.!!! ! ! ! |||||| !: ++GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValV 214565 : .............aggAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGG : 214672 309 : leAlaMetLeuThrPheCysPheAsnIlePheIlePheCysTyrMetGlyGluGlnVa : 327 !: ! :!!:!!... ||||||||||||||||||||||||!!:||||||! || alLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuVa 214673 : TGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGGCGAGCTTGT : 214729 328 : lIleGluGln >>>> Target Intron 2 >>>> GlyGluLysIleAlaLeuT : 337 | !|||||| 123 bp !!:!!|||:!!!.! !. lSerGluGln++ ++CysLysLysValGlyGluV 214730 : GTCTGAACAGgt.........................agTGCAAAAAGGTCGGAGAAG : 214882 338 : hrLeuCysThrLeuGluTrpTyrArgLeuProAsnAlaGlnAlaArgAlaLeuIleLe : 356 .!! !! !! !:!!||||||||||||||||||..! !:!! !! !..!! !||||| alSerTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCysCysIleLe 214883 : TATCGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTGTTGCATTTT : 214939 357 : uIleMetAlaMetSerAsnSerProValLysLeuGlnGlyGlyLysPheIleAspLeu : 375 |||||||||||||||||||||| !!||||||!!! !!.!|||!!..!.:!!!!:||| uIleMetAlaMetSerAsnSerSerValLysPheThrAlaGlyAsnMetValGluLeu 214940 : GATCATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATGGTAGAACTG : 214996 376 : SerLeuArgThrPheGlyThrVal : 383 |||:!!!!!||||||.!!!:!||| SerIleSerThrPheSerSerVal 214997 : TCTATCAGCACTTTCAGCAGTGTA : 215022 vulgar: CbirOr10 259 383 . KQ414889.1 214459 215022 + 257 M 34 102 5 0 2 I 0 64 3 0 2 M 37 111 5 0 2 I 0 119 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214460 215022 257 + . gene_id 5 ; sequence CbirOr10 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214460 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214460 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214460 215022 257 + . alignment_id 5 ; Query CbirOr10 ; Align 214460 260 102 ; Align 214630 294 111 ; Align 214864 331 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 257 Query range: 8 -> 264 Target range: 232447 -> 233221 9 : HisAspIleLysTyrThrPheGluMetAsnArgPheLeuLeuArgMetLeuGlyMetT : 28 !..||| !:!!|||!:!.!!:!!:!!||||||!::!!!|||! ! !:!!||| | ArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaT 232448 : CGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCAT : 232505 29 : rpProValAlaSerThrLysPheProLeuPheGlyThrValThrThrIleValLeuVa : 47 ||||| !!.!!!! !! ! ! ! ! !:!!.!!! !:!::!! !:! rpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLe 232506 : GGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACT : 232562 48 : lThrIleCysPheAlaLeuLeuLeuPheGluLeuValProSerMetLeuTyrIlePhe : 66 !||| ||| !:!!|||:!!:!!! !..!:!!||||||!!!!!:|||!:!|||.!. uThr---CysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeu 232563 : CACC---TGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTG : 232616 67 : MetValLeuLysAspThrArgArgArgIleAsnValIleGlyAsnProLeuPheThrT : 86 .!.! ! !! !..! !..!..!|||!!:!!. !|||||| ! ! ! ! ! PheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheL 232617 : TTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTC : 232676 87 : hrValAlaIleIleLysTyrGlyPheValValLeuTyrLysAsnGlnValLysAspCy : 105 !:!!!.! !:!:!!.||| !!! !:!!:!! ! ! !|||.!.:!! !!|| euMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCy 232677 : TGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTG : 232733 106 : sLeuMetAlaValAspLysAspTrpArgAsnValValGluSerAsnAspArgThrSer : 124 |:!! !||| ! :!!||||||||||||||| !:!! !! ! !!||| ! ! sValGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeu 232734 : CGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTG : 232790 125 : MetIleAsnAsnValLysIleSerArgArgLeuLeuAlaMetCysAlaIlePheValT : 144 |||:!:!!.|||!.!|||:!!.!!||| !:!! !..!!!:..!|||.!!! !:!!: MetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetH 232791 : ATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGC : 232850 145 : yrLeuThrGlyValGlyTrpArgIleIleIleProLeuSerLysGlyLysIle<->Va : 162 !! ! !! !! !..! ..!|||:!!! ! !||| !!! !.!!! !.!! || isThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrVa 232851 : ACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGT : 232907 163 : lThrAlaGluAsnValThrIleArgValLeuProCysLeuAlaTyrPheValValPhe : 181 | ! !|||!:! !:!!!!: ! !||||||||| ! !||| !:!!.!. lGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMet 232908 : GGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATG : 232964 182 : AspValGlnArgSerProAlaTyrGluIleIlePheValValGlnPhePheSerGlyP : 201 |||..!::! !||||||.!! !!||||||!!:||||||:!!|||! !.!!||||||| AspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyP 232965 : GACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGT : 233024 202 : heMetLysTyrThrIleThrValAlaIlePheGlyPheValThrLeuCysGlyMetHi : 220 ||!!: ! !!:!!:!!||||||!.! !! !|||!!.! !.!!:!! !.!||||| heIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHi 233025 : TCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCA : 233081 221 : sIleCysAlaGlnLeuAsnIleLeuAlaThrLeuMetAsnAsnPheValAsnGlu<-> : 239 | |||!.!|||||||||:!::!! !:!! !:!!:!!:!!!!.|||:!!! ! sAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLys 233082 : CGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAA : 233138 240 : <->HisHisLeuGlySerThrHisLysLysLeuValValIleValLysHisGlnValL : 257 !!..!. ! !! !.!!!!.!:!||||||! ! !!||||||:!!|||!!.:!!: GlyGlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuA 233139 : GGGCAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGC : 233198 258 : ysThrLeuGlnPheLeuGluLeu : 264 ::||||||::!!:!|||...:!! rgThrLeuArgTyrLeuSerVal 233199 : GTACATTAAGGTATTTGTCTGTG : 233221 vulgar: CbirOr10 8 264 . KQ414889.1 232447 233221 + 257 M 40 120 G 1 0 M 112 336 G 0 3 M 77 231 G 0 6 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232448 233221 257 + . gene_id 6 ; sequence CbirOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232448 233221 . + . KQ414889.1 exonerate:protein2genome:local exon 232448 233221 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 232448 233221 257 + . alignment_id 6 ; Query CbirOr10 ; Align 232448 9 120 ; Align 232568 50 336 ; Align 232907 162 231 ; Align 233144 239 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 255 Query range: 7 -> 201 Target range: 294672 -> 295254 8 : GluHisAspIleLysTyrThrPheGluMetAsnArgPheLeuLeuArgMetLeuGlyM : 27 ..!:!!|||:!: ! !!!:!.!!:!! !||| ||||||!:! !:!!|||: ArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyL 294673 : AGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTC : 294730 28 : etTrpProValAlaSerThrLysPheProLeuPheGlyThrValThrThrIleValLe : 46 !:||||||:!! !! !!:! ! ! ! !.!...!! !||| !:!!|||:!!|| euTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLe 294731 : TTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCT : 294787 47 : uValThrIleCysPheAlaLeuLeuLeuPheGluLeuValProSerMetLeuTyrIle : 65 |:!!.!! ||| ! !:!!||||||! |||||||||!!! ! !!:! ! uIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCys 294788 : GATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGT : 294844 66 : PheMetValLeuLysAspThrArgArgArgIleAsnValIleGlyAsnProLeuPheT : 85 ! .!. !:!:|||:::...::: ::!!!:!!.:!!:!:||| !|||!:!: ValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrS 294845 : GTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACT : 294904 86 : hrThrValAlaIleIleLysTyrGlyPheValValLeuTyrLysAsnGlnValLysAs : 104 !!! !:!!:!!!!::!!!:!|||.!!! !:!!|||||| ! ! ! ! ! !!||| ! erMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHi 294905 : CTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCA : 294961 105 : pCysLeuMetAlaValAspLysAspTrpArgAsnValValGluSerAsnAspArgThr : 123 !|||:!! ! !:!!!!:!!.||||||!:! :!!! !.!. !!.!. !!|||.!! sCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAla 294962 : TTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCG : 295018 124 : SerMetIleAsnAsnValLysIleSerArgArgLeuLeuAlaMetCysAlaIlePheV : 143 ! !||||||!!.|||!.!! !:!!!!!!:!|||:!! !!.! ! !.!!|||.!.: IleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleI 295019 : ATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAA : 295078 144 : alTyrLeuThrGlyValGlyTrpArgIleIleIleProLeuSerLysGlyLysIleVa : 162 !!||| !:!!!.!|||..!!::!.! !|||:::|||... ...... :!:! leTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGl 295079 : TCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGA : 295135 163 : lThrAlaGluAsnValThrIleArgValLeuProCysLeuAlaTyrPheValValPhe : 181 !!.! !:!!||| !|||||||||!.!|||||| !! !!.!||| :!! !! ! uAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheVal 295136 : GAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTA : 295192 182 : AspValGlnArgSerProAlaTyrGluIleIlePheValValGlnPhePheSerGlyP : 201 |||!.! ! !||||||.!!|||||||||||| ..! !! ||| !!! !..!| AspAlaTyrSerSerProThrTyrGluIleIleArgThrHisLeuPheValTyrSerP 295193 : GACGCTTATTCCAGTCCTACCTACGAGATCATAAGAACTCATCTCTTTGTTTACTCGT : 295252 202 : he : 201 || he 295253 : TC : 295254 vulgar: CbirOr10 7 201 . KQ414889.1 294672 295254 + 255 M 194 582 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294673 295254 255 + . gene_id 7 ; sequence CbirOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294673 295254 . + . KQ414889.1 exonerate:protein2genome:local exon 294673 295254 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294673 295254 255 + . alignment_id 7 ; Query CbirOr10 ; Align 294673 8 582 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 198 Query range: 294 -> 396 Target range: 228250 -> 230512 295 : TrpGlyThrGlnAsnThrAlaIleLeuPheThrTyrSerIleAlaMetLeuThrPheC : 314 |||..! !!:!!.!. !.!!.!! ! ! ||||||||| !:!:|||:!!||| TrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerPheT 228251 : TGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCTTTA : 228308 315 : ysPheAsnIlePheIlePheCysTyrMetGlyGluGlnValIleGluGln >>>> T : 331 ||||||||||||||||||||||||!!:|||||| ||| !|||!!. hrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluHis++ 228309 : ccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACgt...... : 228361 332 : arget Intron 1 >>>> GlyGluLysIleAlaLeuThrLeuCysThrLeuGluT : 343 1889 bp !!..!|||:!!!.! !! !! !! !! !:!!|||| ++CysArgLysValGlyGluLysSerTyrMetIleGluT 228362 : ...................agTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAAT : 230284 344 : rpTyrArgLeuProAsnAlaGlnAlaArgAlaLeuIleLeuIleMetAlaMetSerAs : 362 ||||||||||| !!... !:!! !! !..!! !|||||||||!!:||||||||||| rpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSerAs 230285 : GGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAA : 230341 363 : nSerProValLysLeuGlnGlyGlyLysPheIleAspLeuSerLeuArgThrPheGly : 381 |!!! !!..!|||!!! !!.!|||!!..!.:!!!!:||||||:!!!.!||||||.!! nCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnThrPheSer 230342 : TTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGC : 230398 382 : Thr >>>> Target Intron 2 >>>> ValIleLysMetAlaLeuThrTyrLe : 391 ! 67 bp |||:!!|||! !:!!:!! !!:!|| Asp++ ++ValValLysThrSerMetGlyPheLe 230399 : GACgt.........................agGTCGTTAAAACGTCCATGGGTTTCTT : 230495 392 : uAsnLeuLeuArgThr : 396 ||||:!!||||||||| uAsnMetLeuArgThr 230496 : AAACATGCTACGAACA : 230512 vulgar: CbirOr10 294 396 . KQ414889.1 228250 230512 + 198 M 36 108 5 0 2 I 0 1885 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228251 230512 198 + . gene_id 8 ; sequence CbirOr10 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 228251 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228251 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230403 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230403 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 230404 230405 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 230404 230470 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 230469 230470 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230471 230512 . + . KQ414889.1 exonerate:protein2genome:local exon 230471 230512 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228251 230512 198 + . alignment_id 8 ; Query CbirOr10 ; Align 228251 295 108 ; Align 230248 331 156 ; Align 230471 383 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 196 Query range: 3 -> 154 Target range: 299662 -> 300114 4 : AsnArgTyrTyrGluHisAspIleLysTyrThrPheGluMetAsnArgPheLeuLeuA : 23 ||| !:!!|||:!!:!!|||||| ! ||||||.!.:!!||| !!:!!::||||||! AsnTyrHisTyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuL 299663 : AATTACCATTACCAAAATGACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGA : 299720 24 : rgMetLeuGlyMetTrpProValAlaSerThrLysPheProLeuPheGlyThrValTh : 42 :! :!!|||:!:|||! !:!! !..! !:::! ! ! !.!.! ! !:!!.. ysProIleGlyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuVa 299721 : AACCTATCGGAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGT : 299777 43 : rThrIleValLeuValThrIleCysPheAlaLeuLeuLeuPheGluLeuValProSer : 61 !:!!|||||||||:!!||||||||||||:!! !|||!!!||| :!!:!!|||||| lSerIleValLeuMetThrIleCysPheSerSerLeuPhePheIleValLeuProSer 299778 : CTCGATCGTTCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCC : 299834 62 : MetLeuTyrIlePheMetValLeuLysAspThrArgArgArgIleAsnValIleGlyA : 81 ! !|||||||||.!.!.! !|||..!! !!.! !!:!:!:!!.|||.!!||| GlyHisTyrIlePhePheAlaGluLysSerIleHisValLysValLysValPheGlyP 299835 : GGTCATTACATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTC : 299894 82 : snProLeuPheThrThrValAlaIleIleLysTyrGlyPheValValLeuTyrLysAs : 100 ! !||| ! ! !:!!|||:!!|||||| !!!:!:!! !||| !! .. roValGlyPheCysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGl 299895 : CGGTTGGTTTTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGG : 299951 101 : nGlnValLysAspCysLeuMetAlaValAspLysAsp--TrpArgAsnValValGluS : 119 ! ! !!:!! |||:!!... !|||!!:!:!|||## !..!! yAlaPheGluArgCysIleGlnHisValGluArgAsp##UnkUnkUnkUnkUnkSerA 299952 : CGCGTTCGAACGATGCATCCAACACGTCGAGAGAGACNNNNNNNNNNNNNNNNTTCGA : 300010 120 : erAsnAspArgThrSerMetIleAsnAsnValLysIleSerArgArgLeuLeuAlaMe : 138 :!:!! ||||||! !|||:!:!.. !!|||! !!:||||||!.!||| !.!!:! snHis---ArgThrIleMetLeuArgTyrValThrMetSerArgAsnLeuThrThrVa 300011 : ATCAT---CGTACGATCATGTTGAGATACGTGACTATGAGCAGAAATCTGACGACCGT : 300064 139 : tCysAlaIlePheValTyrLeuThrGlyValGlyTrpArgIleIleIle : 154 !||||||:!:|||:!!||| ! !|||:!!..!!::!.!! :!:!!: lCysAlaValPheLeuTyrAlaGlyGlyMetSerTyrHisThrValMet 300065 : GTGCGCCGTGTTTCTTTACGCAGGTGGTATGTCGTATCACACGGTGATG : 300114 vulgar: CbirOr10 3 154 . KQ414889.1 299662 300114 + 196 M 109 327 F 0 2 M 8 24 G 1 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299663 300114 196 + . gene_id 9 ; sequence CbirOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299663 300114 . + . KQ414889.1 exonerate:protein2genome:local exon 299663 300114 . + . insertions 0 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local similarity 299663 300114 196 + . alignment_id 9 ; Query CbirOr10 ; Align 299663 4 327 ; Align 299992 113 24 ; Align 300016 122 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 259 -> 359 Target range: 260779 -> 262012 260 : GlnPheLeuGluLeuValGlnSerThrThrGlnTyrProSerLeuIleGluIleLeuS : 279 ...|||:!!..!! !:!!:!!..!..!! !.!. !!!!!!!:!:|||:!:!!!! SerPheIleSerArgIleGluAspValMetAsnArgIleCysPheLeuGluLeuPheA 260780 : AGCTTCATATCGCGTATCGAGGATGTGATGAACCGGATATGCTTCCTGGAGTTGTTCA : 260837 280 : erSerThrLeuLeuIleCysIleValGlyTyrTyrIleLeuLeu >>>> Target : 294 !!!!!|||||| !||||||:!!:!!|||||||||||||||:!! 85 rgCysThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeuMet++ 260838 : GGTGCACTCTGGATATATGTCTACTTGGCTACTATATTCTTATGgt............ : 260884 295 : Intron 1 >>>> TyrTrpGlyThrGlnAsnThrAlaIleLeuPheThrTyrSerI : 308 2 bp ! |||!.! !|||:!!! ! !! !|||! !||||||! !! ++GluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheM 260885 : .............agGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCA : 261776 309 : leAlaMetLeuThrPheCysPheAsnIlePheIlePheCysTyrMetGlyGluGlnVa : 327 !: !:!!:!!.!!.!!|||||||||:!!||||||.!!||||||!!:|||||| !:! etMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLe 261777 : TGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACT : 261833 328 : lIleGluGln >>>> Target Intron 2 >>>> GlyGluLysIleAlaLeuT : 337 !! |||||| 81 bp !!..!|||:!!!.! !. uThrGluGln++ ++CysSerLysValGlyAspV 261834 : AACGGAACAGgt.........................agTGCTCGAAAGTTGGTGACG : 261944 338 : hrLeuCysThrLeuGluTrpTyrArgLeuProAsnAlaGlnAlaArgAlaLeuIleLe : 356 .!:!!! !! ! !.!.|||||| !||||||:!! !... !! !! !|||||||| alValTyrMetThrAsnTrpTyrTyrLeuProAspLysSerIleLeuAspLeuIleLe 261945 : TTGTTTACATGACAAACTGGTATTATTTACCTGATAAAAGTATCCTTGATTTGATTTT : 262001 357 : uIleMetAla : 359 ||||!!:||| uIleIleAla 262002 : GATCATTGCA : 262012 vulgar: CbirOr10 259 359 . KQ414889.1 260779 262012 + 175 M 34 102 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 260780 262012 175 + . gene_id 10 ; sequence CbirOr10 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 260780 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260780 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262012 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262012 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 260780 262012 175 + . alignment_id 10 ; Query CbirOr10 ; Align 260780 260 102 ; Align 261734 294 111 ; Align 261926 331 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 332 -> 393 Target range: 287069 -> 287252 333 : LysIleAlaLeuThrLeuCysThrLeuGluTrpTyrArgLeuProAsnAlaGlnAlaA : 352 |||:!!!.!|||:!! !! !! !:!!!!:|||||||||||||||... ! !|||! LysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaG 287070 : AAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTC : 287127 353 : rgAlaLeuIleLeuIleMetAlaMetSerAsnSerProValLysLeuGlnGlyGlyLy : 371 :!!.!||||||||||||.!.|||:!!||||||||| !!:!!|||||| !!.!||||| lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 287128 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 287184 372 : sPheIleAspLeuSerLeuArgThrPheGlyThrValIleLysMetAlaLeuThrTyr : 390 |.!!|||||||||||||||!!!!:!||| !!!:!|||! !! !!: !|||:!!||| sIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 287185 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 287241 391 : LeuAsnLeu : 393 ! !:!!||| TyrHisLeu 287242 : TATCATTTG : 287252 vulgar: CbirOr10 332 393 . KQ414889.1 287069 287252 + 146 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287070 287252 146 + . gene_id 11 ; sequence CbirOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287070 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287070 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287070 287252 146 + . alignment_id 11 ; Query CbirOr10 ; Align 287070 333 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 252 -> 330 Target range: 300593 -> 301797 253 : LysHisGlnValLysThrLeuGlnPheLeuGluLeuValGlnSerThrThrGlnTyrP : 272 |||||| ! !:!!!.!! !::!||| !:!! !|||:!!..!||| !!:: !! LysHisValHisGluAsnCysArgPheAlaLysAsnValGluGluThrLeuArgAspP 300594 : AAGCATGTGCACGAAAATTGCAGATTTGCAAAGAACGTTGAGGAAACTTTGCGTGACT : 300651 273 : roSerLeuIleGluIleLeuSerSerThrLeuLeuIleCysIleValGlyTyrTyrIl : 291 !!!!|||:!:||||||!!!..!|||||||||:!!:!:|||:!::!!! !|||||| heCysLeuValGluIlePheGluSerThrLeuIleLeuCysLeuLeuGluTyrTyrCy 300652 : TCTGCTTAGTGGAAATCTTCGAGTCCACGCTGATTTTGTGTTTGCTCGAATACTACTG : 300708 292 : eLeuLeu >>>> Target Intron 1 >>>> TyrTrpGlyThrGlnAsnThrA : 301 !|||:!! 970 bp ! ||| !!.!...:!!||| sLeuVal++ ++GluTrpGlnAsnSerAspThrI 300709 : TTTGGTGgt.........................agGAATGGCAAAATAGCGACACGA : 301708 302 : laIleLeuPheThrTyrSerIleAlaMetLeuThrPheCysPheAsnIlePheIlePh : 320 ! !:!!!!.|||!:!! !! ! !:!: !:!!||| !||||||||||||||||| leAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAsnIlePheIlePh 301709 : TCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATATTCATATT : 301765 321 : eCysTyrMetGlyGluGlnValIleGluGln : 330 |||||||!!:|||||| :!! !|||||| eCysTyrIleGlyGluIleLeuSerGluGln 301766 : CTGCTACATCGGCGAGATTCTTTCCGAACAG : 301797 vulgar: CbirOr10 252 330 . KQ414889.1 300593 301797 + 146 M 41 123 5 0 2 I 0 966 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300594 301797 146 + . gene_id 12 ; sequence CbirOr10 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300594 300716 . + . KQ414889.1 exonerate:protein2genome:local exon 300594 300716 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300717 300718 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300717 301686 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301685 301686 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300594 301797 146 + . alignment_id 12 ; Query CbirOr10 ; Align 300594 253 123 ; Align 301687 294 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 332 -> 393 Target range: 280282 -> 280465 333 : LysIleAlaLeuThrLeuCysThrLeuGluTrpTyrArgLeuProAsnAlaGlnAlaA : 352 |||:!!!.!:!!:!! !! !! !:!!!!:|||||||||||||||... !:!!|||! LysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaG 280283 : AAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCAC : 280340 353 : rgAlaLeuIleLeuIleMetAlaMetSerAsnSerProValLysLeuGlnGlyGlyLy : 371 :!!.!||||||||||||.!.|||:!!||||||||| !!:!!|||||| !!.!||||| lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 280341 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 280397 372 : sPheIleAspLeuSerLeuArgThrPheGlyThrValIleLysMetAlaLeuThrTyr : 390 |.!!|||||||||||||||!!!!:!||| !!!:!|||! !! !!: !|||:!!||| sIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 280398 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 280454 391 : LeuAsnLeu : 393 ! !:!!||| TyrHisLeu 280455 : TATCATTTG : 280465 vulgar: CbirOr10 332 393 . KQ414889.1 280282 280465 + 145 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280283 280465 145 + . gene_id 13 ; sequence CbirOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280283 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280283 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280283 280465 145 + . alignment_id 13 ; Query CbirOr10 ; Align 280283 333 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 327 -> 383 Target range: 305615 -> 305783 328 : IleGluGlnGlyGluLysIleAlaLeuThrLeuCysThrLeuGluTrpTyrArgLeuP : 347 |||..! !!.!!...!..:!!!.!|||:!!! !! !! !:!!...||||||!.!|||| IleSer***SerSerSerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuP 305616 : ATATCGTAGAGCAGTAGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTAC : 305673 348 : roAsnAlaGlnAlaArgAlaLeuIleLeuIleMetAlaMetSerAsnSerProValLy : 366 ||!.! ! ! !!.!!.!||||||||||||!!:|||||||||!:!!:!|||!.!|| roThrLysThrIleHisGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLy 305674 : CGACTAAGACGATACATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAA : 305730 367 : sLeuGlnGlyGlyLysPheIleAspLeuSerLeuArgThrPheGlyThrVal : 383 |:!!...!.!|||||| ! :!!|||||||||||| !|||||||||!.!||| sIleSerAlaGlyLysValValAspLeuSerLeuSerThrPheGlyAsnVal 305731 : AATCAGTGCTGGTAAAGTAGTTGATTTATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: CbirOr10 327 383 . KQ414889.1 305615 305783 + 129 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305616 305783 129 + . gene_id 14 ; sequence CbirOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305616 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305616 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305616 305783 129 + . alignment_id 14 ; Query CbirOr10 ; Align 305616 328 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 156 -> 260 Target range: 300162 -> 300477 157 : SerLysGlyLysIleValThrAlaGluAsnValThrIleArgValLeuProCysLeuA : 176 ||||||..! ! ! ! !! ! !|||||| !||| !!:! !||| !!! !! !! SerLysAsnTyrThrTyrLysArgGluAsnTyrThrTyrLysProLeuAlaTyrProG 300163 : AGCAAGAATTACACTTACAAAAGGGAGAATTACACTTACAAACCGTTAGCCTATCCTG : 300220 177 : laTyrPheValValPheAspValGlnArgSerProAlaTyrGluIleIlePheValVa : 195 .!||| ! ! !!.!!|||..!|||! !||||||.!!|||||||||:::||| lyTyrAspTrpPheIleAspThrGlnThrSerProThrTyrGluIleValPhePhePh 300221 : GCTACGATTGGTTTATCGATACACAAACCAGTCCTACCTACGAgatcgtatttttctt : 300277 196 : lGlnPhePheSerGlyPheMetLysTyrThrIleThrValAlaIlePheGlyPheVal : 214 ... |||:!!!.!.!.!!:! !|||!.!:!:|||..!||| !:!.!!!!.!.! eHisCysPheAlaAlaMetIleMetTyrAsnValThrThrAlaAlaTyrSerLeuAla 300278 : tcactgttTCGCAGCGATGATCATGTACAACGTGACAACGGCAGCGTACAGTTTGGCG : 300334 215 : ThrLeuCysGlyMetHisIleCysAlaGlnLeuAsnIleLeuAlaThrLeuMetAsnA : 234 .!!:!!! !! !! |||||||||!.!|||:!!.!.|||! ! !.!! !:!!.!.: AlaIlePheValThrHisIleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluA 300335 : GCGATATTCGTCACTCATATCTGTGGACAGATTCAGATACAGATGGCGAGATTGGAGG : 300394 235 : snPheValAsnGlu<->HisHisLeuGlySerThrHisLysLysLeuValValIleVa : 252 !!.!.|||.!...! .!. !! !..! !! ! ! |||||||||||||| spLeuValGluArgThrGlyGluLysAspAspGlyProAspProLeuValValIleVa 300395 : ATCTGGTGGAGAGGACGGGAGAGAAGGACGACGGTCCTGATCCTTTGGTCGTTATCGT : 300451 253 : lLysHisGlnValLysThrLeuGln : 260 |::! !!!!.||||||..!|||::! lArgAspHisValLysValLeuArg 300452 : TCGAGATCACGTGAAGGTTTTAAGG : 300477 vulgar: CbirOr10 156 260 . KQ414889.1 300162 300477 + 121 M 82 246 G 0 3 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300163 300477 121 + . gene_id 15 ; sequence CbirOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 300163 300477 . + . KQ414889.1 exonerate:protein2genome:local exon 300163 300477 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300163 300477 121 + . alignment_id 15 ; Query CbirOr10 ; Align 300163 157 246 ; Align 300412 239 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 329 -> 383 Target range: 224496 -> 224658 330 : GlnGlyGluLysIleAlaLeuThrLeuCysThrLeuGluTrpTyrArgLeuProAsnA : 349 ||| |||||||||... !..!! !! !! !:!!!!:|||||||||||| !!... GlnCysGluLysIleGlyGlnValSerTyrMetIleAspTrpTyrArgLeuThrGlyA 224497 : cagtgtgaaaaaattggacaAGTGTCGTACATGATCGACTGGTATCGGTTGACTGGAA : 224554 350 : laGlnAlaArgAlaLeuIleLeuIleMetAlaMetSerAsnSerProValLysLeuGl : 368 !:!! !! !..!! !|||||||||!!:||||||||||||||| !!:!!|||||| snLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuTh 224555 : ATAAGAAACTATGCTGCATTCTGATAATCGCGATGTCCAATTCTTCGATAAAATTGAC : 224611 369 : nGlyGlyLysPheIleAspLeuSerLeuArgThrPheGlyThrVal : 383 !!.!|||!!..!.:!!!!:|||!!!|||! !||||||||| !||| rAlaGlyAsnMetValGluLeuCysLeuThrThrPheGlyAspVal 224612 : AGCGGGAAACATGGTCGAACTGTGTCTAACCACTTTCGGTGACGTA : 224658 vulgar: CbirOr10 329 383 . KQ414889.1 224496 224658 + 117 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224497 224658 117 + . gene_id 16 ; sequence CbirOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224497 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224497 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224497 224658 117 + . alignment_id 16 ; Query CbirOr10 ; Align 224497 330 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 328 -> 383 Target range: 234982 -> 235147 329 : GluGlnGlyGluLysIleAlaLeuThrLeuCysThrLeuGluTrpTyrArgLeuProA : 348 :!!||| !! |||:!!!.! !! !:!!! !! ! !||||||||||||||||||: GlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProH 234983 : CAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTC : 235040 349 : snAlaGlnAlaArgAlaLeuIleLeuIleMetAlaMetSerAsnSerProValLysLe : 367 !! ! |||! !!.!|||:!!:!!|||!!::!!! !|||!:!! ! !:!!|||:! isLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIl 235041 : ATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAAT : 235097 368 : uGlnGlyGlyLysPheIleAspLeuSerLeuArgThrPheGlyThrVal : 383 ! !.!|||||||||:!!.!.:!!|||:!! !||||||||| !||| eThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235098 : CACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: CbirOr10 328 383 . KQ414889.1 234982 235147 + 114 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234983 235147 114 + . gene_id 17 ; sequence CbirOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234983 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234983 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234983 235147 114 + . alignment_id 17 ; Query CbirOr10 ; Align 234983 329 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 290 -> 398 Target range: 807257 -> 807581 291 : GlyTyrTyrThrIleThrSerTrpAsnAsnIleAspIleLysGlyIleValProTyrI : 310 |||!:! ! !:!:..!:!! !!:!!..! |||! ! !.! !:!! ! !. GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 311 : leIleValTyrIleSerMetThrPheAsnIlePheThrPheCysTyrIleGlyGluIl : 329 !!:!!:!! :!:!!!:!! !.!!.!.:!:!:! !!:!..!||| |||.!.! heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 330 : eLeuThrGlnGlnCysLysAsnIleGlyGluThrAlaTyrMetThrAspTrpTyrTyr : 348 !||| !..!!:! !:!!.!.|||!.!:!!.!!|||||| :!! !|||||| ! rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 349 : LeuProHisLysThrAlaArgAsnLeuIleLeuIleIleSerArgSerAsnValValI : 368 ! !! ! ! .!!||||||:!!|||:!!||||||||| !|||.!!||| ! ! CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 369 : leLysIleThrAlaGlyLysLeuValGlnLeuSerIleAlaThrPheSerAspValMe : 387 !:::|||||||||||||||!!!|||! !:!!!:!:!! !||||||!.!!!::!!:! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 388 : tLysThrSerLeuValTyrLeuAsnIleLeuArg : 398 !|||.!!||| ! !||||||::!:!!:!!!:! uLysAlaSerGlySerTyrLeuSerValMetLys 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: CbirOr21 290 398 . KQ414940.1 807257 807581 + 158 M 108 324 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807581 158 + . gene_id 1 ; sequence CbirOr21 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807581 158 + . alignment_id 1 ; Query CbirOr21 ; Align 807258 291 324 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 292 -> 397 Target range: 807263 -> 807581 293 : IlePheArgAsnGluTrpAsnAsnSerAsnSerMetValMetIleProTyrThrIleV : 312 :!!|||! ! !! !!:!!..!.!:!!!:!:!:!.! :!: ! ! !:!!: ValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValL 807264 : GTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTC : 807321 313 : alCysSerSerAlaIleIleSerMetPheIleValCysTyrThrGlyAsnGlnLeuIl : 331 !! !!!! !:!:|||..!:!!!:!:!! !..!|||.!!|||||| !||| euMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGl 807322 : TGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGA : 807378 332 : eLeuGlnAla<->LysThrAlaLeuMetThrCysGluLeuGluTrpTyrArgLeuSer : 349 ! !!:!.!! :!!! !|||! ! .!!! !!!:! ! |||||||||! ! ! uSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHis 807379 : GTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCAC : 807435 350 : AspLeuLysAlaArgGlnMetValLeuLeuMetIleMetSerAsnLysProIleLysI : 369 ! ! ! !||||||.!.:!::!!|||:!!!!: ! .!!|||..!||| !:::| GlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgI 807436 : GGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTA : 807495 370 : leThrAlaGlyLysValLeuAspLeuSerLeuLysThrPheGlyAsnIleIleLysAl : 388 |||||||||||||| !!:!! :!!!:!||| |||||| !.!.|||:!:||||| leThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAl 807496 : TAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGC : 807552 389 : aSerLeuAlaTyrLeuAsnMetLeuArg : 397 |||| !:!!||||||::!:!::!!!:! aSerGlySerTyrLeuSerValMetLys 807553 : TTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: CbirOr8 292 397 . KQ414940.1 807263 807581 + 123 M 42 126 G 0 3 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807264 807581 123 + . gene_id 1 ; sequence CbirOr8 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807264 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807264 807581 . + . insertions 3 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807264 807581 123 + . alignment_id 1 ; Query CbirOr8 ; Align 807264 293 126 ; Align 807393 335 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 298 -> 408 Target range: 807257 -> 807587 299 : GlyTyrTyrThrIleMetGluTrpGluLeuHisAspThrLysAsnLeuLeuThrTyrP : 318 |||!:! ! !:!::!:! !... ! ! |||!.! !|||! ! !| GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 319 : heThrIlePheIleSerMetSerCysAsnIlePheIlePheCysTyrIleAlaGluIl : 337 ||..!:!:.!.:!:!!!:!! ! !.!.:!:!:!:!!!:!..!||| !.!.!.! heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 338 : eLeuThrAspGlnCysGlnLysValGlyGluMetValTyrMetThrGluTrpTyrArg : 356 !||| !...!:! !:!!:!!:!!!.!:!! !.!||| :!! ||||||||| rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 357 : LeuHisHisLysThrAlaHisAspLeuIleLeuIleIleSerArgSerAsnThrValI : 376 ! !||| ! .!!|||...||||||:!!||||||||| !|||.!!|||:!! ! CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 377 : leLysIleThrAlaGlyLysMetIleGlnLeuSerIleAlaThrPheGlyAspValMe : 395 !:::|||||||||||||||.!.:!!! !:!!!:!:!! !|||||| !!!::!!:! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 396 : tLysThrAlaPheAlaTyrLeuAsnIleLeuArgThrVal : 408 !|||.!!:!! !:!!||||||::!:!!:!!!:!..!:!! uLysAlaSerGlySerTyrLeuSerValMetLysValMet 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: CbirOr16 298 408 . KQ414940.1 807257 807587 + 178 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807587 178 + . gene_id 1 ; sequence CbirOr16 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807587 178 + . alignment_id 1 ; Query CbirOr16 ; Align 807258 299 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 310 -> 401 Target range: 807314 -> 807587 311 : PhePheValTyrValSerMetAlaPheAsnIlePheIlePheCysTyrIleGlyGluI : 330 ||| !!:!! |||!!!:!! !.!!.!.:!:!:!:!!!:!..!||| |||.!.! PheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnT 807315 : TTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACA : 807372 331 : leLeuThrGluGlnCysLysThrValGlyGluLysAlaTyrMetThrAspTrpTyrLy : 349 !||| !..!!:! !:!! !:!!!.!:!! |||||| :!! !||||||:: hrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrAr 807373 : CACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCG : 807429 350 : sLeuProHisLysThrAlaArgGlyLeuLeuLeuIleIleAlaArgSerSerAsnVal : 368 :! !! ! ! .!!||||||! !||||||||||||||| !|||.!!!:!::: ! gCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerPro 807430 : TTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCT : 807486 369 : IleLysIleThrAlaGlyLysLeuPheGlnLeuSerIleAlaThrPheGlyAspValI : 388 !:::|||||||||||||||!!! !!! !:!!!:!:!! !|||||| !!!::!!: TyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleL 807487 : TATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATAC : 807546 389 : leLysThrSerValIleTyrLeuAsnLeuIleArgThrMet : 401 !:|||.!!|||! ! ||||||::!:!!!!:!:!..!||| euLysAlaSerGlySerTyrLeuSerValMetLysValMet 807547 : TGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: CbirOr23 310 401 . KQ414940.1 807314 807587 + 156 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807315 807587 156 + . gene_id 1 ; sequence CbirOr23 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807315 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807315 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807315 807587 156 + . alignment_id 1 ; Query CbirOr23 ; Align 807315 311 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr12 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 283 -> 373 Target range: 807323 -> 807593 284 : LeuIleSerAsnLeuValAsnIlePheValLeuCysTyrIleGlyGluHisIleThrA : 303 :!!:!:!!! |||:!!.!.:!:!:!:!!! !..!||| |||.!. :!! !: MetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluS 807324 : ATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGT : 807381 304 : laValAlaAspGlnValAlaTrpThrThrAsnMetLeuGluTrpTyrArgLeuProTh : 322 !! !.!!!!::!!:!!||| .!!.!! !! ! ! |||||||||! !! ! erArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGl 807382 : CGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGG : 807438 323 : rAsnLysThrArgAsnIleValLeuIleIleIleThrSerHisIleProLeuLysIle : 341 !:!! !.!!|||:!!:!!:!!||||||||| ! !.!!:!! |||! !:::||| yHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIle 807439 : GCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATA : 807495 342 : ThrAlaGlyLysLeuValValLeuSerPheArgThrPheGlyAsnValValLysSerA : 361 ||||||||||||!!!||| !:!!!:!.!! !|||||| !.!.:!!:!!|||:!!: ThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaS 807496 : ACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTT : 807555 362 : laValAlaTyrLeuAsnIleLeuArgThrValValGlu : 373 !!! !:!!||||||::!:!!:!!!:!..!:!!:!!!!: erGlySerTyrLeuSerValMetLysValMetMetAsp 807556 : CTGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: CbirOr12 283 373 . KQ414940.1 807323 807593 + 132 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807324 807593 132 + . gene_id 1 ; sequence CbirOr12 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807324 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807324 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807324 807593 132 + . alignment_id 1 ; Query CbirOr12 ; Align 807324 284 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr6 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 299 -> 396 Target range: 807293 -> 807581 300 : AsnValThrAlaLeuCysSerTyrValThrSerLeuIleSerValIleIleAsnIleP : 319 ||||||.!!|||||| ! |||!:!||| ! :!!:!:!!!:!!:!:|||.!.:!:! AsnValAlaAlaLeuArgSerPheValLeu---MetValThrLeuLeuIleGlnLeuT 807294 : AACGTTGCAGCATTGAGGAGCTTCGTTCTG---ATGGTGACTTTGCTGATTCAGCTGT : 807348 320 : heIleLeuCysPheIleGlyGluTyrIleThrIleGlnAlaAspGluValSerLeuTh : 338 :!:!!! !..!!:! |||.!. :!! ! !:!.!!!!:|||:!!:!!! !.! yrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluIleAlaGlnAl 807349 : ACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGC : 807405 339 : rLeuCysThrLeuAsnTrpTyrArgLeuProIleSerThrValArgAsnMetValLeu : 357 ! !! ! !! ! !|||||||||! !! ! !.!!!.!|||:!!:!::!!||| aAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeu 807406 : CGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTG : 807462 358 : IleThrAlaAlaSerSerValProProGlnIleThrAlaGlyLysPheIleAspLeuS : 377 |||! ! ! !.!!!:! !||| !!::||||||||||||||||||:!! :!!! IleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheValProMetA 807463 : ATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGA : 807522 378 : erPheArgThrPheGlyAspValIleLysSerAlaValIleTyrLeuAsnMetLeuAr : 396 :!.!! !|||||| !!!::!!:!:|||:!!:!!! ! ||||||::!:!::!!!: snLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSerValMetLy 807523 : ATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAA : 807579 397 : g : 396 ! s 807580 : G : 807581 vulgar: CbirOr6 299 396 . KQ414940.1 807293 807581 + 131 M 10 30 G 1 0 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807294 807581 131 + . gene_id 1 ; sequence CbirOr6 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807294 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807294 807581 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807294 807581 131 + . alignment_id 1 ; Query CbirOr6 ; Align 807294 300 30 ; Align 807324 311 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 309 Query range: 11 -> 163 Target range: 453 -> 0 12 : SerAsnAsnAspTyrSerLeuGlnLeuThrArgTrpPheLeuIleProIleAlaAlaTrpProA : 33 :!!!:!!:!|||||||||||||||! !!.!|||||| :!!! ! !|||!.!.!!||||||! AlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProG 453 : GCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCAC : 390 34 : rgAlaAlaProSerThrValGluLysIleSerLeuGlnAlaHisValLeuAlaCysTyrLeuLe : 54 :! !:!! !!!:! !! !..!!!.||||||! ! ! !:!!|||:!! |||||| ! lnPheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIle---CysTyrThrAl 389 : AGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATC---TGCTACACCGC : 330 55 : uIleValValValMetValProCysPheLeuTyrMetSerLeuGluGluAsnAspIleGlnMet : 75 !|||:!! !! !!!::!!||||||! |||:!!:!:! !||||||:!!... !.!! ! ! ! aIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThr 329 : AATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACG : 267 76 : LysLeuAsnAlaMetGlyProLeuSerHisTrpIleMetGlyThrIleAsnTyrTrpLeuLeuL : 97 |||:!!!!. !:!:||||||||||||||||||:!:.!. !!! !|||!:!||| :!!|||| LysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuL 266 : AAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGT : 201 98 : euThrArgSerAsnAspIleArgGluCysValArgHisMetGluAsnAspTrpArgLeuValGl : 118 || !||| !!!!. !|||!.!.!.! !|||!.!|||||||||!.!||||||||| !..! euLeuArgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrTh 200 : TGCTGCGACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGac : 138 119 : nArgAlaAspAspGlnTrpValMetLeuArgTyrAlaArgIleGlyArgPheValAlaAlaPhe : 139 ||| ::: ::: |||||||||!:!||||||!:!.!!.!!|||!:!!.!||| !||| rArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePhe 137 : gagaaaggagaagaaagaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTT : 75 140 : CysAlaValPheMetGlnSerGlyThrLeuLeuPheGlnValValLysAlaMetThrSerMetP : 161 ||||||:!!|||!!:!!..!!|||! !||| !!:! |||:!!! !||| |||!!!||| CysAlaIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaSerThrThrMetV 74 : TGTGCGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTCCACCACGATGG : 9 162 : roValVal : 163 !|||||| alValVal 8 : TTGTCGTG : 1 vulgar: CbirOr23 11 163 . LHQN01027980.1 453 0 - 309 M 38 114 G 1 0 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1 453 309 - . gene_id 1 ; sequence CbirOr23 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1 453 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1 453 . - . insertions 0 ; deletions 1 LHQN01027980.1 exonerate:protein2genome:local similarity 1 453 309 - . alignment_id 1 ; Query CbirOr23 ; Align 454 12 114 ; Align 340 51 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 178 Query range: 333 -> 393 Target range: 4381 -> 4201 334 : GlnCysLysThrValGlyGluLysAlaTyrMetThrAspTrpTyrLysLeuProHisLysTh : 354 |||||| !! !||||||||| !!.!|||||||||||||||||| ! ||||||!!.!:!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 355 : rAlaArgGlyLeuLeuLeuIleIleAlaArgSerSerAsnValIleLysIleThrAlaGlyL : 375 ! !! !! !|||:!!|||||||||.!!||||||!:! |||:!!:!!||||||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 376 : ysLeuPheGlnLeuSerIleAlaThrPheGlyAspValIleLysThrSerValIle : 393 ||:::|||...:::|||:!! !|||||||||||||||! !:!!|||!:!:!!:!! ysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeuVal 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTTGTT : 4202 vulgar: CbirOr23 333 393 . LHQN01027980.1 4381 4201 - 178 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4202 4381 178 - . gene_id 2 ; sequence CbirOr23 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4202 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4202 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4202 4381 178 - . alignment_id 2 ; Query CbirOr23 ; Align 4382 334 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 141 Query range: 337 -> 387 Target range: 1978 -> 1822 338 : ValGlyGluLysAlaTyrMetThrAspTrpTyrLysLeuProHisLysThrAlaArgGlyLe : 358 ||||||! !|||!.!|||||||||!!:||||||::!||| !!!!.|||||||||! !|||!! ValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGlyPh 1978 : GTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGGTTT : 1918 359 : uLeuLeuIleIleAlaArgSerSerAsnValIleLysIleThrAlaGlyLysLeuPhe<->< : 378 !:!!:!!||||||:!!|||||||||! ||||||||||||||||||||||||!!! ! eValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheValTyr* 1917 : TGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTATACT : 1855 379 : ->GlnLeuSerIleAlaThrPheGlyAspVal : 387 !! !|||:!!|||||||||||||||||| **ThrSerSerValAlaThrPheGlyAspVal 1854 : GAACATCGTCTGTCGCAACATTTGGCGATGTG : 1823 vulgar: CbirOr23 337 387 . LHQN01027980.1 1978 1822 - 141 M 40 120 G 0 6 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1823 1978 141 - . gene_id 3 ; sequence CbirOr23 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1823 1978 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1823 1978 . - . insertions 6 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1823 1978 141 - . alignment_id 3 ; Query CbirOr23 ; Align 1979 338 120 ; Align 1853 378 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 256 -> 294 Target range: 5607 -> 5425 257 : GluHisHisLeuArgValLeu{Se} >>>> Target Intron 1 >>>> {r}PheIl : 266 |||.!.|||||||||||||||{!:} 68 bp {!}||||| GluGluHisLeuArgValLeu{As}++ ++{n}PheIl 5607 : GAGGAACATTTGAGAGTGTTG{AA}gt.........................ag{C}TTCAT : 5512 267 : eSerArgMetGluSerLeuMetGlnHisIleCysLeuValGluLeuValGlyCysThrLeuA : 287 |||||||:!:|||:!!:!!|||.!. ! |||!!!:!!||||||:!! !!||||||:!! eSerArgLeuGluAlaMetMetAsnLysAlaCysPheLeuGluLeuMetArgCysThrMetA 5511 : ATCGCGCTTAGAGGCAATGATGAACAAAGCGTGTTTCCTGGAGTTAATGAGGTGCACGATGG : 5449 288 : snMetCysLeuLeuAlaTyrTyr : 294 !!!:||| !:!!!.!|||||| laIleCysAlaIleGlyTyrTyr 5448 : CTATTTGCGCAATTGGATATTAT : 5426 vulgar: CbirOr23 256 294 . LHQN01027980.1 5607 5425 - 109 M 7 21 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 5426 5607 109 - . gene_id 4 ; sequence CbirOr23 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 5585 5607 . - . LHQN01027980.1 exonerate:protein2genome:local exon 5585 5607 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 5583 5584 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 5517 5584 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 5517 5518 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 5426 5516 . - . LHQN01027980.1 exonerate:protein2genome:local exon 5426 5516 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 5426 5607 109 - . alignment_id 4 ; Query CbirOr23 ; Align 5608 257 21 ; Align 5516 265 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 218 Query range: 340 -> 405 Target range: 4381 -> 4097 341 : GlnCysGlnLysValGlyGluMetValTyrMetThrGluTrpTyrArgLeuHisHisLysTh : 361 |||||| !||||||||||||:!!||||||||||||!!:|||||| !|||! !!.!:!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 362 : rAlaHisAspLeuIleLeuIleIleSerArgSerAsnThrValIleLysIleThrAlaGlyL : 382 ! !! !||||||||||||||||||!!!|||||||||..!|||:!!:!!||||||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 383 : ysMetIleGlnLeuSerIleAlaThrPheGlyAsp >>>> Target Intron 1 >>>> : 394 ||:::......:::|||:!! !|||||||||||| 89 bp ysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATgt......................... : 4220 395 : ValMetLysThrAlaPheAlaTyrLeuAsnIleLeu : 405 |||:!:||||||!.!|||||||||||||||!!:||| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeu 4219 : agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTT : 4098 vulgar: CbirOr16 340 405 . LHQN01027980.1 4381 4097 - 218 M 53 159 5 0 2 I 0 85 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4098 4381 218 - . gene_id 1 ; sequence CbirOr16 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4223 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4098 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4098 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4098 4381 218 - . alignment_id 1 ; Query CbirOr16 ; Align 4382 341 159 ; Align 4134 394 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 149 Query range: 340 -> 394 Target range: 1990 -> 1822 341 : GlnCysGlnLysValGlyGluMetValTyrMetThrGluTrpTyrArgLeuHisHisLysTh : 361 :!! ! |||||||||! !! ||||||||||||||||||||||||||| !!!.||||| GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysTh 1990 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAAC : 1930 362 : rAlaHisAspLeuIleLeuIleIleSerArgSerAsnThrValIleLysIleThrAlaGlyL : 382 ||||! !! !!!!:!!:!!|||||||||||||||!:!! !|||||||||||||||||||||| rAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyL 1929 : TGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAA : 1867 383 : ysMetIle<-><->GlnLeuSerIleAlaThrPheGlyAspVal : 394 ||.!.:!! !! !|||:!!|||||||||||||||||| ysPheValTyr***ThrSerSerValAlaThrPheGlyAspVal 1866 : AATTCGTATACTGAACATCGTCTGTCGCAACATTTGGCGATGTG : 1823 vulgar: CbirOr16 340 394 . LHQN01027980.1 1990 1822 - 149 M 44 132 G 0 6 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1823 1990 149 - . gene_id 2 ; sequence CbirOr16 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1823 1990 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1823 1990 . - . insertions 6 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1823 1990 149 - . alignment_id 2 ; Query CbirOr16 ; Align 1991 341 132 ; Align 1853 385 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 306 Query range: 10 -> 159 Target range: 444 -> 3 11 : AspTyrSerValGlnLeuAsnArgTrpPheLeuLysProLeuGlyAlaTrpProArgSerAlaT : 32 |||||||||:!!|||! !||||||||| :!!||| !:!!|||.!!||||||!:! AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGln------P 444 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAG------T : 387 33 : hrThrSerLysGlyGluArgAlaLeuSerTyrIleLeuIlePheIleCysPhePheLeuIleAl : 53 !:!!|||!!. !|||||| !:!!||| ||||||! ! ! ||||||!:! ! !||| heSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLe 386 : TCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACT : 324 54 : aLeuThrAlaValProCysAlaLeuAsnValPhePheGluGluArgAspIleValLeuLysLeu : 74 !!!!:!! !:!!||||||:!!|||:!!:!!.!..!.|||:!! !! !.!! ! !|||:!! uPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysVal 323 : ATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTG : 261 75 : ArgAlaIleGlyProLeuSerHisTrpIleMetGlyAlaMetAsnTyrCysSerLeuLeuLeuA : 96 !:! !:!!||||||||||||||||||:!:.!. !! !!!:!:!||| !! !|||||||||| LysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuA 260 : AAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGC : 195 97 : rgSerAlaAspIleArgGlyCysValGlnHisMetGlnArgAspTrpGlnIleIleLysHisTh : 117 || !! ! !|||!.! !! !|||.!.||||||:!!! !||||||::!! ! ... rgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLy 194 : GACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaa : 132 118 : rArgAspArgGluIleMetAlaArgAsnAlaGlnLeuGlyArgLeuValAlaGlyPheCysAla : 138 ... :::|||:::||| !!:! !!|||:!!!!!.!!|||! !!.!||| !||||||||| sGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAla 131 : ggagaagaaagaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCG : 69 139 : ValPheMetHisGlyGlyValPheSerTyrAsnIleValCysGlyMetThrThrValValVal : 159 :!!|||!!:|||||||||:!!.!!.!!||| !:!!:!! !.! ||||||:!!|||||| IlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaSerThrThrMetValVal 68 : ATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTC : 4 vulgar: CbirOr21 10 159 . LHQN01027980.1 444 3 - 306 M 19 57 G 2 0 M 128 384 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4 444 306 - . gene_id 1 ; sequence CbirOr21 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4 444 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4 444 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 4 444 306 - . alignment_id 1 ; Query CbirOr21 ; Align 445 11 57 ; Align 388 32 384 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 198 Query range: 332 -> 392 Target range: 4381 -> 4201 333 : GlnCysLysAsnIleGlyGluThrAlaTyrMetThrAspTrpTyrTyrLeuProHisLysTh : 353 |||||| !!!.:!!||||||..!!.!|||||||||||||||||||||||||||!!.!:!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 354 : rAlaArgAsnLeuIleLeuIleIleSerArgSerAsnValValIleLysIleThrAlaGlyL : 374 ! !! !:!!|||||||||||||||!!!|||||||||||||||:!!:!!||||||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 375 : ysLeuValGlnLeuSerIleAlaThrPheSerAspValMetLysThrSerLeuVal : 392 ||::: ...:::|||:!! !||||||.!!||||||! :!!|||!:!|||||| ysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeuVal 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTTGTT : 4202 vulgar: CbirOr21 332 392 . LHQN01027980.1 4381 4201 - 198 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4202 4381 198 - . gene_id 2 ; sequence CbirOr21 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4202 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4202 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4202 4381 198 - . alignment_id 2 ; Query CbirOr21 ; Align 4382 333 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 303 -> 386 Target range: 2519 -> 1822 304 : LysGlyIleValProTyrIleIleValTyrIleSerMetThrPheAsnIlePheThrPheCy : 324 ||| !:!!||| !!||| !|||:!!|||:!:|||||||||||||||! !||| LysThrValValSerTyrGlyIleIleTyrValSerMetThrPheAsnThrPheProThrGl 2519 : AAAACGGTAGTTTCATACGGCATCATATACGTGTCCATGACTTTTAACACTTttccgaccgg : 2459 325 : sTyrIleGlyGluIleLeu{Th} >>>> Target Intron 1 >>>> {r}GlnGlnC : 334 ::: :::|||{ } 442 bp {!} !:!! ySerLeuLeuIleValLeu{Ph}++ +-{e}GlyGluT 2458 : tagcctattaatcgttCTA{TT}gt.........................at{C}GGAGAGA : 1987 335 : ysLysAsnIleGlyGluThrAlaTyrMetThrAspTrpTyrTyrLeuProHisLysThrAla : 354 !! !!.:!!|||! !! !!.!|||||||||!!:|||||| ||| !!!!.||||||||| hrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAla 1986 : CTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCT : 1927 355 : ArgAsnLeuIleLeuIleIleSerArgSerAsnValValIleLysIleThrAlaGlyLysLe : 375 ! !..!!!!:!!:!!|||||||||||||||!:!:!!||||||||||||||||||||||||!! LeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPh 1926 : CTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATT : 1864 376 : uVal<-><->GlnLeuSerIleAlaThrPheSerAspVal : 386 !||| !! !|||:!!|||||||||.!!|||||| eValTyr***ThrSerSerValAlaThrPheGlyAspVal 1863 : CGTATACTGAACATCGTCTGTCGCAACATTTGGCGATGTG : 1823 vulgar: CbirOr21 303 386 . LHQN01027980.1 2519 1822 - 139 M 27 81 S 0 2 5 0 2 I 0 438 3 0 2 S 1 1 M 45 135 G 0 6 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1823 2519 139 - . gene_id 3 ; sequence CbirOr21 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 2437 2519 . - . LHQN01027980.1 exonerate:protein2genome:local exon 2437 2519 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 2435 2436 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 1995 2436 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 1995 1996 . - . intron_id 0 ; splice_site "AT" LHQN01027980.1 exonerate:protein2genome:local cds 1823 1994 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1823 1994 . - . insertions 6 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1823 2519 139 - . alignment_id 3 ; Query CbirOr21 ; Align 2520 304 81 ; Align 1994 332 135 ; Align 1853 377 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 266 Query range: 15 -> 168 Target range: 450 -> 0 16 : AspAsnAspTyrSerLeuGlnValAsnArgTrpLeuLeuLysSerIleGlyAlaTrpProGluS : 37 ..!!:!||||||||||||||| !||||||||| !:!!||||||||||||.!!||||||:!!! SerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnP 450 : AGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGT : 387 38 : erSerMetLysTyrSerValThrArgAsnIleLeuLysThrValLeuArgLeuThrCysHisLe : 58 !||| ! !:!:!! !|||||||||! !::! :!!|||!.!:!!! !|||:!! heSerSer------AsnLeuGluArgAsnIleSerArg---IleLeuAsnValIleCysTyrTh 386 : TCTCGTCG------AACCTCGAGAGAAACATCTCTCGA---ATATTAAACGTGATCTGCTACAC : 333 59 : uLeuIleAlaPheThrValValProSerMetLeuTyrIleIlePheGluGluLysAspPheArg : 79 ! !||| !|||:!!:!!:!!|||!!! !|||:!!:!!!!:.!.|||:!! ! !||| ! rAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyr 332 : CGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTAC : 270 80 : LeuArgLeuLysAlaValGlyProPheSerHisCysLeuMetGlyGlyIleAsnTyrCysSerL : 101 !!:!:!!||| !:!!||||||!!.||||||!! :!!.!. !! !|||!:!||| !! !| ThrLysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetL 269 : ACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGC : 204 102 : euLeuHisHisGlySerHisIleArgArgSerIleGluHisMetGluAsnAspTrpArgMetAl : 122 |||||! !.. !!!.! !|||!.!!.!! !:!!.!.|||||||||!.!|||||||||! !.! euLeuLeuArgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrTh 203 : TGTTGCTGCGACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGAC : 141 123 : aLysArgGluHisAspArgGluValMetLeuArgAsnAlaArgIleGlyArgThrIleAlaGly : 143 ! |||:::... :::||||||||||||!:! !!|||!:!.!!.!!||| ! ||| ! rThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIle 140 : GacgagaaaggagaagaaagaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATT : 78 144 : ValCysAlaLeuIleMetGlnGlyGlyIleLeuSerTyrAsnLeuAlaArgGlyMetSerProI : 165 !!||||||:!!.!!!!:!!.||||||||||||.!!||| !:!! !! !!.! !!! !!! PheCysAlaIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaSerThrThrM 77 : TTTTGTGCGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTCCACCACGA : 12 166 : leIleGluVal : 168 !::!!! ||| etValValVal 11 : TGGTTGTCGTG : 1 vulgar: CbirOr17PSE 15 168 . LHQN01027980.1 450 0 - 266 M 24 72 G 2 0 M 8 24 G 1 0 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1 450 266 - . gene_id 1 ; sequence CbirOr17PSE ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1 450 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1 450 . - . insertions 0 ; deletions 3 LHQN01027980.1 exonerate:protein2genome:local similarity 1 450 266 - . alignment_id 1 ; Query CbirOr17PSE ; Align 451 16 72 ; Align 379 42 24 ; Align 355 51 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 188 Query range: 317 -> 373 Target range: 4381 -> 4213 318 : GlnCysLysLysValGlyGluAlaAlaTyrMetThrAsnTrpTyrTyrLeuProArgLysTh : 338 |||||| !||||||||||||!.!!.!|||||||||:!!|||||||||||||||!:!!:!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 339 : rValPheAlaLeuIleLeuIleIleLeuArgSerArgIleThrValLysIleThrAlaAlaL : 359 !:!!.!!! !||||||||||||||| !||||||!.!:!:..!|||:!!|||||||||...| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 360 : ysValPheHisMetSerIleAlaThrPheGlyValValMetGln : 373 ||:::||||||||||||:!! !|||||||||! !|||! :!! ysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGlu 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAA : 4214 vulgar: CbirOr17PSE 317 373 . LHQN01027980.1 4381 4213 - 188 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4214 4381 188 - . gene_id 2 ; sequence CbirOr17PSE ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4214 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4214 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4214 4381 188 - . alignment_id 2 ; Query CbirOr17PSE ; Align 4382 318 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 315 -> 371 Target range: 1996 -> 1822 316 : MetAspGlnCysLysLysValGlyGluAlaAlaTyrMetThrAsnTrpTyrTyrLeuProAr : 336 !!:! :!! !! |||||||||! ! !!.!|||||||||.!.|||||| ||| !!!: IleGlyGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGl 1996 : ATCGGAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCA : 1936 337 : gLysThrValPheAlaLeuIleLeuIleIleLeuArgSerArgIleThrValLysIleThrA : 357 !||||||!.!.!!!.!!!!:!!:!!||||||! !||||||!!!!!:..!:!!|||||||||| nLysThrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrA 1935 : AAAAACTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCG : 1873 358 : laAlaLysValPheHis<-><->MetSerIleAlaThrPheGlyValVal : 371 ||!.!||| !! ! :!! !|||:!!||||||||||||! !||| laGlyLysPheValTyr***ThrSerSerValAlaThrPheGlyAspVal 1872 : CTGGAAAATTCGTATACTGAACATCGTCTGTCGCAACATTTGGCGATGTG : 1823 vulgar: CbirOr17PSE 315 371 . LHQN01027980.1 1996 1822 - 107 M 47 141 G 0 6 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1823 1996 107 - . gene_id 3 ; sequence CbirOr17PSE ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1823 1996 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1823 1996 . - . insertions 6 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1823 1996 107 - . alignment_id 3 ; Query CbirOr17PSE ; Align 1997 316 141 ; Align 1850 363 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 191 Query range: 342 -> 407 Target range: 4381 -> 4097 343 : GlnCysLysLysIleGlyGluValSerHisMetIleAspTrpTyrArgLeuProGluLysLy : 363 |||||| !|||:!!||||||||| !:!!|||! !||||||||| !||||||:!!!:!!: GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 364 : sGlyLeuAlaLeuIleLeuIleIleAlaMetSerAsnSerSerPheLysLeuThrAlaAlaA : 384 ! !|||! !|||||||||||||||.!! |||||| ! ! !!:!!:!!||||||.... gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 385 : snLeuPheGluLeuSerLeuSerThrPheGlyAsp >>>> Target Intron 1 >>>> : 396 ..:::|||...:::||||||! !|||||||||||| 89 bp ysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATgt......................... : 4220 397 : ValValArgThrSerValAlaTyrLeuAsnMetLeu : 407 ||||||!:!|||.!! !!|||||||||||||||||| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeu 4219 : agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTT : 4098 vulgar: CbirOr15 342 407 . LHQN01027980.1 4381 4097 - 191 M 53 159 5 0 2 I 0 85 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4098 4381 191 - . gene_id 1 ; sequence CbirOr15 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4223 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4098 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4098 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4098 4381 191 - . alignment_id 1 ; Query CbirOr15 ; Align 4382 343 159 ; Align 4134 396 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr13 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 300 -> 392 Target range: 4578 -> 4210 301 : TrpGluArgAsnAspAlaLeuSerSerLeuThrTyrPheIleMetLeuIleSerPheThrPh : 321 ||| !..!!:!||||||! !! !! !!!!||||||.!!:!!! |||:!!:!! !!..! TrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValValSe 4578 : TGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTGTTtc : 4518 322 : eAsnIlePheIleLeuCysTyrIleGlyAspAlaLeuSerThrGln >>>> Target In : 337 ||| |||::::::|||||||||.!!||| !|||!!! !||| 92 b rAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4517 : taatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt.............. : 4468 338 : tron 1 >>>> GlySerLysValHisThrThrSerCysThrIleAspTrpTyrCysLeuS : 353 p !!! !|||||| ! !..! !! !! !! !|||||||||! !||| ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuP 4467 : ...........agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGC : 4330 354 : erAsnLysGluAlaArgTyrLeuIleLeuIleIleAlaThrAlaSerHisProThrLysLeu : 373 !!.!.!:!..! !! ! !!|||||||||||||||.!! !:!!!:! !..!:!!:!! roGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIle 4329 : CACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATC : 4270 374 : ThrProGlyLysValMetAspLeuSerPheSerSerPheGlyThrIleValArgThr : 392 ||| ||||||:::... :::|||.!!! !!!!|||||| !:!! !..!||| ThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThr 4269 : ACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 4211 vulgar: CbirOr13 300 392 . LHQN01027980.1 4578 4210 - 131 M 36 108 5 0 2 I 0 88 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4211 4578 131 - . gene_id 1 ; sequence CbirOr13 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4578 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4578 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4211 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4211 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4211 4578 131 - . alignment_id 1 ; Query CbirOr13 ; Align 4579 301 108 ; Align 4379 337 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 340 -> 396 Target range: 4372 -> 4204 341 : LysIleGlyThrThrCysTyrMetIleGluTrpTyrGlnLeuProAsnAspLysAlaArgSe : 361 |||:!!||| !..! !||||||! !!!:|||||| ! ||||||.!. !:! !! !.. LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAs 4372 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGA : 4312 362 : rMetIlePheProIleIleMetSerSerTyrProIleGluLeuThrAlaGlyLysMetLeuL : 382 !:!:|||.!. !|||! ! |||!:! !:!!|||:!!||||||||||||:::... pLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLysIlePheH 4311 : TTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaaaatattcc : 4249 383 : ysMetThrMetSerSerPheSerAsnIleLeuLysIleSerMet : 396 |||:!!:!:! !!!!|||.!!:!!:!! !:!!! !!:!:!: isMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeu 4248 : atatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTT : 4205 vulgar: CbirOr4 340 396 . LHQN01027980.1 4372 4204 - 105 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4205 4372 105 - . gene_id 1 ; sequence CbirOr4 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4205 4372 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4205 4372 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4205 4372 105 - . alignment_id 1 ; Query CbirOr4 ; Align 4373 341 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr12 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 134 Query range: 306 -> 368 Target range: 4372 -> 4097 307 : GlnValAlaTrpThrThrAsnMetLeuGluTrpTyrArgLeuProThrAsnLysThrArgAs : 327 :!!|||!.! ..!..! !!||| !!!:|||||| !|||||| !!..!:!! !! !:! LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAs 4372 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGA : 4312 328 : nIleValLeuIleIleIleThrSerHisIleProLeuLysIleThrAlaGlyLysLeuValV : 348 !:!!:!!|||||||||! ! !|||:!!:!: !:!!:!!|||||||||||||||::: pLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLysIlePheH 4311 : TTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaaaatattcc : 4249 349 : alLeuSerPheArgThrPheGlyAsn >>>> Target Intron 1 >>>> ValValL : 359 :::|||.!! !|||||||||:!! 89 bp ||||||| isMetSerLeuTyrThrPheGlyAsp++ ++ValValL 4248 : atatgTCGCTTTACACGTTCGGCGATgt.........................agGTAGTAA : 4127 360 : ysSerAlaValAlaTyrLeuAsnIleLeu : 368 ||!!!!.! !!||||||||||||!!:||| ysThrGlyPheAlaTyrLeuAsnMetLeu 4126 : AAACAGGATTCGCCTACTTGAATATGCTT : 4098 vulgar: CbirOr12 306 368 . LHQN01027980.1 4372 4097 - 134 M 50 150 5 0 2 I 0 85 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4098 4372 134 - . gene_id 1 ; sequence CbirOr12 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4223 4372 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4372 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4098 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4098 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4098 4372 134 - . alignment_id 1 ; Query CbirOr12 ; Align 4373 307 150 ; Align 4134 357 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr8 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 343 -> 396 Target range: 4345 -> 4097 344 : GluTrpTyrArgLeuSerAspLeuLysAlaArgGlnMetValLeuLeuMetIleMetSerAs : 364 !!:|||||| !||| !!.!. !!:! !! !.!.:!::!!|||:!!!!:! ! ||||| AspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAs 4345 : GATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAA : 4285 365 : nLysProIleLysIleThrAlaGlyLysValLeuAspLeuSerLeuLysThrPheGlyAsn : 385 | ! !:!!:!!|||||||||||||||:::... :::|||||| ! |||||||||:!! nValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp+ 4284 : CGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATg : 4222 386 : >>>> Target Intron 1 >>>> IleIleLysAlaSerLeuAlaTyrLeuAsnMetL : 396 89 bp :!!:!!|||.!!.!!!!!|||||||||||||||| + ++ValValLysThrGlyPheAlaTyrLeuAsnMetL 4221 : t.........................agGTAGTAAAAACAGGATTCGCCTACTTGAATATGC : 4100 397 : eu : 396 || eu 4099 : TT : 4098 vulgar: CbirOr8 343 396 . LHQN01027980.1 4345 4097 - 127 M 41 123 5 0 2 I 0 85 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4098 4345 127 - . gene_id 1 ; sequence CbirOr8 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4223 4345 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4345 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4098 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4098 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4098 4345 127 - . alignment_id 1 ; Query CbirOr8 ; Align 4346 344 123 ; Align 4134 385 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 239 Query range: 27 -> 165 Target range: 438 -> 30 28 : SerValGlnLeuAsnValTrpThrLeuLysProIleGlyThrTrpProLysSerProAspArgS : 49 |||:!!|||! !||| !|||.!!:!!||| !|||||||||||||||:!!! ! !| SerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPhe------SerS 438 : AGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTC------TCGT : 381 50 : erTrpIleGluAlaValCysCysArgThrLeuHisAlaSerCysTyrGlyLeuLeuAlaLeuIl : 70 || :!!||| ! ! !! !|||! !|||:!!!.!! !|||||| ! !:!! !!!! erAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSe 380 : CGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTC : 318 71 : eLeuIleProCysGlyMetTyrIleValLeuGluMetLysAspPheTyrAsnGlnLeuLysLeu : 91 :!!|||||||||..!:!!:!!:!!:!!||||||! ! !||||||!..:!!:!!|||:!! rIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIle 317 : GATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATA : 255 92 : AlaSerAlaLeuSerPhePheMetMetSerValMetLysTyrCysAlaLeuIleValHisGlnA : 113 !.!! !!|||||| !!:::!!.!.!!!:!!!!:!..||| ! !|||:!::!!!..!:: LeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgL 254 : CTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTA : 189 114 : laAspIleArgLysCysValGluTyrIleGluGlyAspTrpArgAsnValArgTyrThrGluAs : 134 ! !|||!.! ! ! !|||.!.:!!!!:||| !|||||||||!....! ||| ysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLy 188 : AAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaa : 126 135 : pArgAsnIleMetLeuLysAsnAlaAsnPheGlyArgArgLeuValValIleCysGlyPhePhe : 155 :::...:::||||||||| !!|||!!.|||.!!||| ! !!.!:!!.!!|||!.!.!!||| sLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePhe 125 : gaaagaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTC : 63 156 : MetTyrGlyGlyIleLeuPheTyrTyrVal : 165 !!::!!|||||||||||| |||! !||| IleHisGlyGlyIleLeuGlyTyrCysVal 62 : ATACACGGTGGTATACTTGGATATTGTGTT : 31 vulgar: CbirOr14 27 165 . LHQN01027980.1 438 30 - 239 M 18 54 G 2 0 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 31 438 239 - . gene_id 1 ; sequence CbirOr14 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 31 438 . - . LHQN01027980.1 exonerate:protein2genome:local exon 31 438 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 31 438 239 - . alignment_id 1 ; Query CbirOr14 ; Align 439 28 54 ; Align 385 48 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 529 Query range: 11 -> 294 Target range: 1082 -> 165 12 : SerAsnAsnAspTyrSerLeuGlnLeuThrArgTrpPheLeuIleProIleAlaAlaTrpPr : 32 :!!!:!!:!|||||||||||||||! !!.!|||||| :!!! ! !|||!.!|||||||| AlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpPr 1082 : GCTAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCC : 1022 33 : oArgAlaAlaProSerThrValGluLysIleSerLeuGlnAlaHisValLeuAlaCysTyrL : 53 |!:!:!!:!! |||!.!:!!|||!:!|||! !! !!:! ! !:!! !|||||| oGlnSerSer---SerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrT 1021 : ACAGTCCTCG---TCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACA : 962 54 : euLeuIleValValValMetValProCysPheLeuTyrMetSerLeuGluGluAsnAspIle : 73 ! !:!!:!! !!..!!!::!!||||||! |||:!!:!:! !||||||:!!.!. !.!! hrAlaValLeuPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPhe 961 : CCGCAGTACTATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTC : 902 74 : GlnMetLysLeuAsnAlaMetGlyProLeuSerHisTrpIleMetGlyThrIleAsnTyrTr : 94 ! ! !|||:!!!!. !:!:||||||||||||||||||:!:.!. !!! !|||!:!||| TyrThrLysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrTh 901 : TACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACAC : 839 95 : pLeuLeuLeuThrArgSerAsnAspIleArgGluCysValArgHisMetGluAsnAspTrpA : 115 :!!|||||| !||| !!!!. !||||||.!.! ! !!!.!|||||||||!.!||||||| rMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpA 838 : CATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGA : 776 116 : rgLeuValGlnArgAlaAspAspGlnTrpValMetLeuArgTyrAlaArgIleGlyArgPhe : 135 || !..!...||| ::: ::: :::||||||!:!||||||!:!.!!.!!|||!:! rgThrThrMetArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyr 775 : GAACGACGAtgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATAC : 716 136 : ValAlaAlaPheCysAlaValPheMetGlnSerGlyThrLeuLeuPheGlnValValLysAl : 156 !.!||| !! !|||.!!:!!|||!!:!!..!!|||! !||| !!:! |||:!!! !|| AlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAl 715 : GCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGC : 653 157 : aMetThrSerMetProValValValGlyAsnGluThrValLeuValHisProMetThrCysP : 177 |.!.|||!!!||| !|||||||||||||||||||||:!!:!!:!!!.! !:!! !!! | aPheThrThrMetValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuP 652 : GTTCACCACGATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTAC : 590 178 : roIleTyrSerLysPheValAspThrArgPheSerProAlaAsnGluIleMetLeuValVal : 197 ||!!:|||!.! !.!!:!! ..! ! !:! !! !|||||||||:!:|||:!! ! roMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSer 589 : CAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCA : 530 198 : GlnIleLeuSerCysPheValValAsnSerIleThrValGlyAlaCysSerLeuAlaAlaVa : 218 |||.!!|||||| ! |||:!!!.!|||!!!! !.!!:!!.!!!.! ||||||.!!::!!. GlnPheLeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAl 529 : CAGTTTCTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGC : 467 219 : lPheAlaMetHisAlaTyrGlyGlnLeuSerMetLeuPheSerTrpLeuAsnGluLeuValA : 239 !.!..!! ||||||! !|||||||||.!!:!!:!!.!.! !! !:!!.!.!!:!!!|||: aLeuThrSerHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValS 466 : TCTAACATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGA : 404 240 : laAsp<->GluAspLysGlyAsnGluPheAlaAspGlnLysLeuAlaValIleValGluHis : 258 :!||| ..! !!:!|||!!.!!: ! ! !.!.:!!:!! !!..!||||||||| ! erAspAlaArgArgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluLys 403 : GTGATGCGAGACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAA : 344 259 : HisLeuArgValLeu{Se} >>>> Target Intron 1 >>>> {r}PheIleSerAr : 268 |||||||||||||||{!:} 68 bp {!}||||||||||| HisLeuArgValLeu{As}++ ++{n}PheIleSerAr 343 : CATTTGAGAGTGTTG{AA}gt.........................ag{C}TTCATATCGCG : 246 269 : gMetGluSerLeuMetGlnHisIleCysLeuValGluLeuValGlyCysThrLeuAsnMetC : 289 |!!:|||:!!:!!!!:.!. ! |||!!!:!!||||||..! !!||||||:!! !!!:| gIleGluAlaMetIleAsnLysAlaCysPheLeuGluLeuThrArgCysThrIleAlaIleC 245 : CATAGAGGCAATGATAAACAAAGCGTGTTTCCTGGAGTTAACGAGGTGCACGATAGCTATAT : 183 290 : ysLeuLeuAlaTyrTyr : 294 ||:!!|||!.!|||||| ysValLeuGlyTyrTyr 182 : GCGTACTTGGATATTAT : 166 vulgar: CbirOr23 11 294 . LHQN01028641.1 1082 165 - 529 M 24 72 G 1 0 M 204 612 G 0 3 M 23 69 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 166 1082 529 - . gene_id 1 ; sequence CbirOr23 ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1082 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1082 . - . insertions 3 ; deletions 1 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 166 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 166 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 166 1082 529 - . alignment_id 1 ; Query CbirOr23 ; Align 1083 12 72 ; Align 1011 37 612 ; Align 396 241 69 ; Align 256 265 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 535 Query range: 10 -> 293 Target range: 1073 -> 165 11 : AspTyrSerValGlnLeuAsnArgTrpPheLeuLysProLeuGlyAlaTrpProArgSerAl : 31 |||||||||:!!|||! !||||||||| :!!||| !:!!||||||||||||!:!||| AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSer-- 1073 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCC-- : 1013 32 : aThrThrSerLysGlyGluArgAlaLeuSerTyrIleLeuIlePheIleCysPhePheLeuI : 52 :!!|||!!. !|||||| !:!!||| ||||||! ! ! ||||||!:! ! !: ----SerSerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaV 1012 : ----TCGTCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAG : 956 53 : leAlaLeuThrAlaValProCysAlaLeuAsnValPhePheGluGluArgAspIleValLeu : 72 !! !!!!||| !:!!||||||:!!|||:!!|||.!..!.|||:!!..! !.!! ! ! alLeuPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThr 955 : TACTATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACG : 896 73 : LysLeuArgAlaIleGlyProLeuSerHisTrpIleMetGlyAlaMetAsnTyrCysSerLe : 93 |||:!!!:! !:!!||||||||||||||||||:!:.!. !! !!!:!:!||| !! !|| LysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLe 895 : AAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCT : 833 94 : uLeuLeuArgSerAlaAspIleArgGlyCysValGlnHisMetGlnArgAspTrpGlnIleI : 114 |||||||||| !! ! !|||||| !! ! !!.!.||||||:!!! !||||||::!! ! uLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrT 832 : GTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGA : 770 115 : leLysHisThrArgAspArgGluIleMetAlaArgAsnAlaGlnLeuGlyArgLeuValAla : 134 ! ... ... :::||||||||| !!:! !!|||:!!!!!.!!|||! !!.!||| hrMetArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAla 769 : CGAtgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCG : 710 135 : GlyPheCysAlaValPheMetHisGlyGlyValPheSerTyrAsnIleValCysGlyMetTh : 155 !! !|||.!!:!!|||!!:|||||||||:!!.!!.!!||| !:!!:!! !.!.!.|| IleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheTh 709 : ATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCAC : 647 156 : rThrValValValProIleGlyAspAsnArgSerValGluMetIleGlnLeuProValProS : 176 ||||:!!|||||| !:!!||| |||..!!!!:!! :!! ! !||||||:!!|||! rThrMetValValValValGly---AsnGluThrMetIleLeuArgValLeuProLeuProM 646 : CACGATGGTTGTCGTGGTTGGA---AACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAA : 587 177 : erTyrSerLysPheIleAspAlaArgPheSerProAlaAsnGluIleValLeuMetThrGln : 196 !|||!.! !.!!:!! !.! ! !:! !! !|||||||||||||||:!!:!!||| etTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGln 586 : TGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAG : 527 197 : ValLeuSerThrPheValValAsnSerThrThrValSerAlaCysSerLeuAlaAlaValPh : 217 !!|||||| !|||:!!!.!|||!!!!:!.!!:!!|||!.! ||||||.!!::!!.!.! PheLeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLe 526 : TTTCTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCT : 464 218 : eAlaMetHisAlaCysGlyGlnLeuAspIleLeuMetAlaArgLeuAsnArgLeuValGluG : 238 ..!! ||||||! !|||||||||! !:!::!!||| ! !:!!.!. !!!!|||...! uThrSerHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerA 463 : AACATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTG : 401 239 : lyGluAspSerArgThrSerGluSerLeuGlnArgArgLeuAlaAsnIleValAspHisHis : 258 !! ! !!||| !!.!!!:..!! ! !..!:!! !!!..||||||!!: ! ||| spAlaArgArgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHis 400 : ATGCGAGACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACAT : 341 259 : LeuArgValLeu{Se} >>>> Target Intron 1 >>>> {r}PheIleAlaArgIl : 268 ||||||||||||{!:} 68 bp {!}||||||:!!||||| LeuArgValLeu{As}++ ++{n}PheIleSerArgIl 340 : TTGAGAGTGTTG{AA}gt.........................ag{C}TTCATATCGCGCAT : 243 269 : eGluAspValMetHisGlnIleCysLeuValGluLeuLeuGlyCysThrPheAsnLeuCysM : 289 ||||! :!!!!::!!:!! |||!!!:!!|||||| ! !!||||||.!. !:!!|||: eGluAlaMetIleAsnLysAlaCysPheLeuGluLeuThrArgCysThrIleAlaIleCysV 242 : AGAGGCAATGATAAACAAAGCGTGTTTCCTGGAGTTAACGAGGTGCACGATAGCTATATGCG : 180 290 : etLeuGlyTyrTyr : 293 !:|||||||||||| alLeuGlyTyrTyr 179 : TACTTGGATATTAT : 166 vulgar: CbirOr21 10 293 . LHQN01028641.1 1073 165 - 535 M 20 60 G 2 0 M 130 390 G 1 0 M 99 297 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 166 1073 535 - . gene_id 1 ; sequence CbirOr21 ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1073 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1073 . - . insertions 0 ; deletions 3 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 166 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 166 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 166 1073 535 - . alignment_id 1 ; Query CbirOr21 ; Align 1074 11 60 ; Align 1014 33 390 ; Align 624 164 297 ; Align 256 264 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 540 Query range: 18 -> 304 Target range: 1079 -> 156 19 : AspSerGluTyrSerIleGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProAr : 39 ..!|||!!:||||||:!!|||! !||||||||| :!!||| !|||||||||||||||!: SerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGl 1079 : AGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACA : 1019 40 : gAlaGlyAlaSerIleSerIleMetAsnLysLeuLeuSerArgGlyIleGlnPheThrCysH : 60 ! ||| |||! !:!:.!.!:!:!!:!!|||||| !:!:.!. ! ! !|||: n---------SerSerSerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysT 1018 : G---------TCCTCGTCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCT : 965 61 : isSerLeuIleAlaSerThrValIleProCysIleLeuTyrIleLeuPheGluProAspVal : 80 !!!!! !:!! !! !|||:!!||||||||| |||:!!:!!:!!.!.||| !!!:..! yrThrAlaValLeuPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThr 964 : ACACCGCAGTACTATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACT : 905 81 : <->TyrLeuLysLeuLysAlaPheGlyProMetIleHisTrpLeuMetGlyGlyAlaAsnTy : 100 ||| !|||:!!||| !.!!||||||:!!! !||||||:!!.!. !! ! !!:!|| PheTyrThrLysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTy 904 : TTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTA : 842 101 : rCysSerLeuLeuSerSerSerHisLysIleArgLysCysValAspHisMetArgThrAspT : 121 | !! !|||||| ! !! !! ! ! |||||| ! ! ! !!:!!||||||..!||||||| rThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspT 841 : CACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATT : 779 122 : rpGlnMetValGluArgMetSerAspArgGluValMetLeuArgAsnAlaArgPheGlyArg : 141 ||::!! !..! ||| ... :::|||:::||||||!:! !!|||!:!|||.!!||| rpArgThrThrMetArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArg 778 : GGAGAACGACGAtgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGA : 719 142 : PheValSerThrPheCysAlaValPheMetGlnGlyGlyValCysSerTyrSerValIleTh : 162 !:!!.!:!!! !! !|||.!!:!!|||!!:!!.||||||:!! !.!!|||!!!|||!!:|| TyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetTh 718 : TACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGAC : 656 163 : rValLeuThrProValIleMetGlnIleGlyAsnIleThrIleThrMetArgGlnLeuProC : 183 |!.!!!!||| !!:!!:!!:!: !:!!|||||| |||!!:! !:!!||| !||||||! rAlaPheThrThrMetValValValValGlyAsnGluThrMetIleLeuArgValLeuProL 655 : AGCGTTCACCACGATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGT : 593 184 : ysProPheTyrThrAspLeuValAspValArgTyrSerProAlaAsnGluIleValLeuGly : 203 |||.!.|||! !! |||:!! ||| ! !:! !! !||||||||||||||| ! euProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeu 592 : TACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTG : 533 204 : LeuGlnLeuMetSerThrValIleValAsnSerValThrValGlyAlaCysSerLeuAlaAl : 224 ! !|||!!!:!:||| ! !!|||!.!|||!!! !.!!:!!.!!!.! ||||||.!!:: SerGlnPheLeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSe 532 : TCACAGTTTCTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAG : 470 225 : aValPheAlaMetHisAlaCysGlyGlnLeuAsnIleLeuMetIleLysLeuAspGluLeuV : 245 !!.!.!..!! ||||||! !|||||||||..!:!::!!|||:!:..!:!!!!:!!:!!!| rAlaLeuThrSerHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheV 469 : TGCTCTAACATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTG : 407 246 : alAspGlyThrGluGlyGluPheLysThrAsnHis<->ArgLysLeuAlaValIleValGlu : 264 ||..!! !.!!..! !!..! ||| !:!!||| !:!!:!! !!..!||||||||| alSerAspAlaArgArgArgGlyLysAspAspHisPheAspGluIleProThrIleValGlu 406 : TGAGTGATGCGAGACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAG : 347 265 : HisHisLeuArgValLeu{Se} >>>> Target Intron 1 >>>> {r}PheValSe : 274 ! |||||||||||||||{!:} 68 bp {!}|||:!!|| LysHisLeuArgValLeu{As}++ ++{n}PheIleSe 346 : AAACATTTGAGAGTGTTG{AA}gt.........................ag{C}TTCATATC : 249 275 : rGlnIleGluAlaIleMetHisHisIleCysLeuIleGluLeuLeuGlyCysThrIleAspI : 295 |!::|||||||||!!:!!::!! ! |||!!!:!:|||||| ! !!|||||||||! !| rArgIleGluAlaMetIleAsnLysAlaCysPheLeuGluLeuThrArgCysThrIleAlaI 248 : GCGCATAGAGGCAATGATAAACAAAGCGTGTTTCCTGGAGTTAACGAGGTGCACGATAGCTA : 186 296 : leCysMetLeuGlyTyrTyrThrIleMet : 304 |||||:!:||||||||||||! !.!!||| leCysValLeuGlyTyrTyrIlePheMet 185 : TATGCGTACTTGGATATTATATATTCATG : 157 vulgar: CbirOr16 18 304 . LHQN01028641.1 1079 156 - 540 M 21 63 G 3 0 M 38 114 G 0 3 M 176 528 G 0 3 M 14 42 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 157 1079 540 - . gene_id 1 ; sequence CbirOr16 ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1079 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1079 . - . insertions 6 ; deletions 3 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 157 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 157 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 157 1079 540 - . alignment_id 1 ; Query CbirOr16 ; Align 1080 19 63 ; Align 1017 43 114 ; Align 900 81 528 ; Align 369 257 42 ; Align 256 272 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr4 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 275 Query range: 19 -> 300 Target range: 1070 -> 156 20 : TyrAlaAlaGlnValSerLeuTrpLeuLeuLysProMetGlyAlaTrpProLeuGlnGlnGl : 40 |||::! !||| !!:!! !||| !:!!||| !!!:|||||||||||| |||..... TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpPro---GlnSerSe 1070 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCA---CAGTCCTC : 1013 41 : nProThrIleLeuGluIleIleValTyrIlePheSerIleAlaIleThrThrPheLeuGlnL : 61 ! !!!.!:!! !..!|||||| ! |||!!.!:!:!: ! ! !||| :!! | rSerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaVal---L 1012 : GTCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTA---C : 953 62 : euPheMetIleIleProTrpPheLeuSerIleIleThrAlaAsnTrpSerPheTyrAspIle : 81 |||||! !|||||||||!! ! ||| !:!!!!: !! !!!. !!!!|||||| ! ! euPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLys 952 : TATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAA : 893 82 : IleArgThrAlaCysProLeuIlePheValAsnThrIlePheLeuArgTyrLeuLeuLeuLe : 102 :!:!:!! ! ! !!||||||! ! ! ! ! !.!!:!!!!!||| !:!!||||| ValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLe 892 : GTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTT : 830 103 : uPheHisArgAspAlaIleArgSerCysIleAsnCysValAlaGluAspTrpArgAsnValV : 123 |.!.!..||| ! .!!|||||| !! !.!!||| !:!!! ! |||||||||!....!: uLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrM 829 : GCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGA : 767 124 : alIleAlaGluHisArgGluIleMetLeuThrAsnAlaLysSerGlyArgPhePheGlyMet : 143 :: ||| :::||||||||||||! ! !!||||||! !.!!|||!:! !.!!!: etArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIle 766 : tgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATT : 707 144 : ValSerValAlaPheMetPheSerSerGlyLeuProTyrCysValMetProLeuLeu<-><- : 163 !!!!..! !|||!!: !.!!.!! !||| !|||||||||||| !! !!!! SerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrTh 706 : TCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCAC : 644 164 : >LeuProSerProValAsnGluAspAsnValThrIleLysValPheProAsnProCysGluL : 183 :!! ! ! !|||....!.!!:!.!:!!! !:!::::|||.!.||| ||| ! rMetValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrL 643 : GATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACA : 581 184 : euIlePheValAspValGlnValSerProPheTyrGluValAlaTyrThrLeuAspValPhe : 203 ! .!!:!! |||.!...!!:! !!.!. !!|||:!!!.! ! !! !.!. !!.!! ysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeu 580 : AAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTC : 521 204 : AlaCysCysValPheTyrThrIlePheCysGlyIleCysSerLeuThrAlaLysPheValMe : 224 :!! ! ! !:!! !!|||! ! !.!!:!! |||||||||::! .!...! SerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSe 520 : TCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATC : 458 225 : tHisAlaCysGlyGlnCysGluIleLeuMetAspPhePheGluLysLeuVal<->AspGlyA : 244 ||||||! !||||||! ! :!::!!||| ! .!!||| ! !!!||| |||!.! rHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaA 457 : ACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGA : 395 245 : spAspLysAsnGluSerThrIleAsnGlnArgIleSerAsnValValThrHisHisLeuArg : 264 !!:!...:!!..! ! ! !.!...!||| !!!..:!!||| ! ! ||||||||| rgArgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHisLeuArg 394 : GACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGA : 335 265 : IleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheValSerAspValAspLy : 274 :!:|||{!!} 68 bp {.}|||:!!||| !:!!!!: ValLeu{As}++ ++{n}PheIleSerArgIleGluAl 334 : GTGTTG{AA}gt.........................ag{C}TTCATATCGCGCATAGAGGC : 237 275 : sValLeuAsnGluIleCysLeuAlaGluPheLeuAsnSerSerCysAsnIleCysLeuLeuG : 295 !:!!:!!|||:!! |||!!! !|||!!. !!..!!!!!! !||||||:!!|||| aMetIleAsnLysAlaCysPheLeuGluLeuThrArgCysThrIleAlaIleCysValLeuG 236 : AATGATAAACAAAGCGTGTTTCCTGGAGTTAACGAGGTGCACGATAGCTATATGCGTACTTG : 174 296 : lyTyrTyrValIleVal : 300 ||||||||:!!.!!:!! lyTyrTyrIlePheMet 173 : GATATTATATATTCATG : 157 vulgar: CbirOr4 19 300 . LHQN01028641.1 1070 156 - 275 M 17 51 G 1 0 M 22 66 G 1 0 M 102 306 G 0 6 M 79 237 G 0 3 M 25 75 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 157 1070 275 - . gene_id 1 ; sequence CbirOr4 ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1070 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1070 . - . insertions 9 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 157 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 157 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 157 1070 275 - . alignment_id 1 ; Query CbirOr4 ; Align 1071 20 51 ; Align 1020 38 66 ; Align 954 61 306 ; Align 642 163 237 ; Align 402 242 75 ; Align 256 268 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 484 Query range: 15 -> 278 Target range: 1079 -> 165 16 : AspAsnAspTyrSerLeuGlnValAsnArgTrpLeuLeuLysSerIleGlyAlaTrpProGl : 36 ..!!:!||||||||||||||| !||||||||| !:!!|||||||||||||||||||||:! SerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGl 1079 : AGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACA : 1019 37 : uSerSerMetLysTyrSerValThrArgAsnIleLeuLysThrValLeuArgLeuThrCysH : 57 !|||||| ||| ! !..!!..|||:!!... !:!!|||!.!:!!! !|||: nSerSer---------SerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysT 1018 : GTCCTCG---------TCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCT : 965 58 : isLeuLeuIleAlaPheThrValValProSerMetLeuTyrIleIlePheGluGluLysAsp : 77 !! ! !:!! !||||||:!!:!!|||!!! !|||:!!:!!!!:.!.|||:!!:!! ! yrThrAlaValLeuPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThr 964 : ACACCGCAGTACTATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACT : 905 78 : PheArgLeuArgLeuLysAlaValGlyProPheSerHisCysLeuMetGlyGlyIleAsnTy : 98 ||| ! !!:!:!!||| !:!!||||||!!.||||||!! :!!.!. !! !|||!:!|| PheTyrThrLysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTy 904 : TTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTA : 842 99 : rCysSerLeuLeuHisHisGlySerHisIleArgArgSerIleGluHisMetGluAsnAspT : 119 | !! !||||||! !.. !!!.! !||||||!.!! !.!!.!.|||||||||!.!|||| rThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspT 841 : CACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATT : 779 120 : rpArgMetAlaLysArgGluHisAspArgGluValMetLeuArgAsnAlaArgIleGlyArg : 139 |||||! !.!!! |||:::... :::|||:::||||||!:! !!|||!:!.!!.!!||| rpArgThrThrMetArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArg 778 : GGAGAACGACGAtgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGA : 719 140 : ThrIleAlaGlyValCysAlaLeuIleMetGlnGlyGlyIleLeuSerTyrAsnLeuAlaAr : 160 ! ||| ! !|||.!!:!!.!!!!:!!.||||||||||||.!!||| !:!! !! TyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetTh 718 : TACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGAC : 656 161 : gGlyMetSerProIleIleGluValIleGlyAsnGluThrValAlaPheGlyArgLeuProC : 181 !!.!.!.!!! !!!!::!!! |||:!!||||||||||||:!! !!!. !! !||||||! rAlaPheThrThrMetValValValValGlyAsnGluThrMetIleLeuArgValLeuProL 655 : AGCGTTCACCACGATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGT : 593 182 : ysProSerPheAsnMetIleValAspThrArgPheSerProValTyrGluValValLeuVal : 201 |||! !!:!!!. !:!!:!! ..! ! !:! !!:!! !!|||:!!||||||:!! euProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeu 592 : TACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTG : 533 202 : PheGlnPheLeuSerIleIleValValAsnAsnValThrIleGlyGlyCysGlyLeuThrAl : 222 ! |||||||||||| !.!!:!!!.!|||!.! !.!!|||.!!! ! .!!||||||:: SerGlnPheLeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSe 532 : TCACAGTTTCTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAG : 470 223 : aValPheAlaMetHisAlaCysGlyGlnLeuAsnMetValMetLeuArgLeuHisGluLeuV : 243 !!.!.!..!! ||||||! !|||||||||..!:!!||||||||| !:!!.!.!!:!!!| rAlaLeuThrSerHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheV 469 : TGCTCTAACATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTG : 407 244 : alAsnGluLysArg{Gl} >>>> Target Intron 1 >>>> {u}PheLeuSerArg : 252 ||!:!!!: !|||{..} 134 bp {.}|||:!!|||||| alSerAspAlaArg{Ar}-- ++{g}PheIleSerArg 406 : TGAGTGATGCGAGA{CG}ca.........................ag{C}TTCATATCGCGC : 246 253 : MetGluThrValIleArgGlnIleCysPheValGluLeuValGlyCysThrPheAsnLeuCy : 273 !!:|||.!!:!!|||!.!:!! ||||||:!!||||||..! !!||||||.!. !:!!|| IleGluAlaMetIleAsnLysAlaCysPheLeuGluLeuThrArgCysThrIleAlaIleCy 245 : ATAGAGGCAATGATAAACAAAGCGTGTTTCCTGGAGTTAACGAGGTGCACGATAGCTATATG : 183 274 : sMetLeuGlyTyrTyr : 278 |:!:|||||||||||| sValLeuGlyTyrTyr 182 : CGTACTTGGATATTAT : 166 vulgar: CbirOr17PSE 15 278 . LHQN01028641.1 1079 165 - 484 M 23 69 G 3 0 M 206 618 S 0 2 5 0 2 I 0 130 3 0 2 S 1 1 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 166 1079 484 - . gene_id 1 ; sequence CbirOr17PSE ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 391 1079 . - . LHQN01028641.1 exonerate:protein2genome:local exon 391 1079 . - . insertions 0 ; deletions 3 LHQN01028641.1 exonerate:protein2genome:local splice5 389 390 . - . intron_id 1 ; splice_site "CA" LHQN01028641.1 exonerate:protein2genome:local intron 257 390 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 166 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 166 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 166 1079 484 - . alignment_id 1 ; Query CbirOr17PSE ; Align 1080 16 69 ; Align 1011 42 618 ; Align 256 249 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr15 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 354 Query range: 24 -> 282 Target range: 1067 -> 296 25 : SerIleGlnLeuAsnArgTrpLeuLeuGlnProLeuGlyAlaTrpProArgSerAlaGlyIl : 45 |||:!!|||! !||||||||| !:!!:!! !:!!||||||||||||!:!|||:!! SerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSer----- 1067 : AGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCG----- : 1010 46 : eSerSerMetGluArgTyrThrTyrThrLeuValAsnValIleCysThrGlyLeuIleGlyP : 66 |||!:!:!:|||||| !! !! ! !:!!:!!|||||||||||| ! ! !:!! !| -SerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuP 1009 : -TCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTAT : 950 67 : heIleLeuValProThrValValTyrMetThrLeuGluIleGluAspThrTyrAsnThrLeu : 86 ||! :!!:!!||| ! !:!!:!!:!:! !||||||! !||| ! !|||!..! !:!! heThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysVal 949 : TCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTG : 890 87 : LysLeuSerGlyProValSerPhePheValMetAlaIleIleLysTyrSerSerLeuIlePh : 107 |||:!! !||||||:!!||| !!::|||.!...!||||||!..|||!!!! !|||:!:.! LysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLe 889 : AAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCT : 827 108 : eArgGluAsnAspIleArgLysGlyIleLysTyrIleGluAsnAspTrpMetAsnThrArgT : 128 .|||...!!. !|||||| ! !.!!!!.:!!!!:|||!.!||||||! !..|||! uArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetA 826 : GCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtga : 764 129 : yrGlnAsnAspArgIleIleMetIleLysSerAlaLysPheGlyArgArgLeuValValIle : 148 :::... ::: ||||||:!:|||! !|||||||||.!!||| ! !!.!:!! ! rgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSer 763 : gaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCT : 704 149 : CysAlaPhePheMetTyrGlyGlyAlaValPheTyrTyrLeuAlaLeuProPheSerLysGl : 169 |||.!!.!!|||!!::!!|||||| !:!! |||! !:!! ! ! !!|||!!!! ! CysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMe 703 : TGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGAT : 641 170 : yThrIleThrGluAspAspAspAsnLeuThrTyrArgProLeuValTyrProValAlaArgV : 190 !..!:!!..!! ! :!!!!:!.!:!!! !! ||| !||| !! |||:!! !!:!! tValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysG 640 : GGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAG : 578 191 : alIleValAspAlaArgHisSerProIleSerGluIlePhePheTrpValGlnCysLeuSer : 210 !:!!:!! !.! ! !:! !!!!:!:!|||||| !!.!!! ! !|||! !|||||| lyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSer 577 : GGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCC : 518 211 : GlyPheValAlaHisSerIleThrThrGlyAlaCysSerLeuAlaAlaValPheAlaMetHi : 231 ||||||:!!|||:!!!!!! !.!!! !.!!!.! ||||||.!!::!!.!.!..!! || GlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHi 517 : GGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACA : 455 232 : sAlaTyrGlyArgMetGluIleLeuIleGlnTrpIleGluHisLeuVal<->AspGlyArgG : 251 ||||! !|||!:!:!!! :!::!!!!: !! !|||||| !!!!!||| |||!.!|||. sAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgA 454 : CGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGAC : 392 252 : luAspLeuCysGlySerValAspAsnArgLeuAlaMetIleValHisGlnHisValAlaIle : 271 .. ! ! !..! ! !:!!..!:!! !!! ||||||.!.:!!|||:!! !:!: rgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgVal 391 : GCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTG : 332 272 : LeuArgPheIleAlaLeuIleAspAsnIleLeu : 282 |||!:!! :!!..!|||:!:||| |||||| LeuLys***ValCysLeuLeuAspLeuIleLeu 331 : TTGAAGTAAGTATGTTTGTTGGATTTGATTTTG : 297 vulgar: CbirOr15 24 282 . LHQN01028641.1 1067 296 - 354 M 19 57 G 2 0 M 202 606 G 0 3 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 297 1067 354 - . gene_id 1 ; sequence CbirOr15 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 297 1067 . - . LHQN01028641.1 exonerate:protein2genome:local exon 297 1067 . - . insertions 3 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local similarity 297 1067 354 - . alignment_id 1 ; Query CbirOr15 ; Align 1068 25 57 ; Align 1011 46 606 ; Align 402 248 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr5 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 175 Query range: 26 -> 276 Target range: 1070 -> 323 27 : TyrAlaValGlnIleSerValTyrLeuLeuLysProIleGlyAlaTrpProLeuAspAspAs : 47 |||::!:!!||| !:! !!:: !:!!||| !||||||||||||||| TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpPro----------- 1070 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCA----------- : 1019 48 : pGluAlaThrSerTrpLeuLysIleAlaValHisLysValSerThrLeuIleAlaThrPheL : 68 :!!:!!:!!||| |||:!!! ! !:!! !::!:!!! !!.!:!!|||..! ! ! -GlnSerSerSerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrA 1018 : -CAGTCCTCGTCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCG : 959 69 : euMetLeuPheThrIleValProTrpIleValGlnIleIleLysGluLysTrpSerValIle : 88 !:!:||||||||||||:!!|||!! :!!!!.:!!!!: !|||||| !!!! !! ! laValLeuPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyr 958 : CAGTACTATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTAC : 899 89 : GlnMetLeuArgThrIleCysProLeuLeuPheThrLeuThrValPheAlaArgTyrIleLe : 109 !! :!!!:!! !:!! !!|||||| ! ! !:!! ! !.!! !!!!|||! !:! ThrLysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMe 898 : ACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCAT : 836 110 : uLeuMetLeuHisGlnAsnGlnLeuLysSerCysMetAspArgValAlaAspAspTrpArgT : 130 !|||:!!|||!..!::!!. :!!::: !! !.!.:!!!.!:!!! ! !||||||||| tLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgT 835 : GCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAA : 773 131 : yrThrIleIleAlaGluAspArgGluThrMetLeuAlaAsnAlaArgMetGlyArgThrPhe : 150 |||!:: ||| :::||| |||||| ! !!|||!:!.!..!!||| ! hrThrMetArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAla 772 : CGACGAtgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCG : 713 151 : GlyIleValSerValValPheMetPheSerSer<-><->GlyAlaLeuPhePheSerLeuPr : 169 !.!||| !!!!..!:!!|||!!: !.!!.!! ||| !! ! !!.!.!!! ! AlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPh 712 : GCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTT : 650 170 : oLeuValLeuProSerLeuIleAsnGluAspAsnValThrValArgLeuHisProSerProC : 190 ! !..!:!! ! !:!!:!!....!.!!:!.!:!!! !:!!|||:!!! |||! !||| eThrThrMetValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProM 649 : CACCACGATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAA : 587 191 : ysGluLeuLeuValPheAspSerLysIleThrProValTyrGluIleValTyrLeuLeuGln : 210 ! ! !:!!.!! ! ! ! !.! !!:!! !!||||||||| !|||! !||| etTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGln 586 : TGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAG : 527 211 : ThrLeuSerGlyCysThrIleTyrSerAlaPheCysGlyIleCysSerLeuMetAlaAsnPh : 231 !|||||||||! !! ! !!!!!::! !.!!:!! ||||||! ::! !.! PheLeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLe 526 : TTTCTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCT : 464 232 : eValValHisValCysGlyGlnCysAspValLeuThrLeuIlePheAspGluThrVal<->A : 251 ...! !|||!.!! !||||||! ! !|||:!!! !||| .!!!!:!!: !||| | uThrSerHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerA 463 : AACATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTG : 401 252 : spGlyGlyGluHisAsnArgGlyProIleGluGlyArgIleAlaThrAlaValThrArgHis : 271 ||!.! !!.........!:!! ! ! ! ! !..!||| !!||| !||| !!:!||| spAlaArgArgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHis 400 : ATGCGAGACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACAT : 341 272 : LeuArgMetLeuArg : 276 ||||||:!!|||!:! LeuArgValLeuLys 340 : TTGAGAGTGTTGAAG : 324 vulgar: CbirOr5 26 276 . LHQN01028641.1 1070 323 - 175 M 17 51 G 4 0 M 114 342 G 0 6 M 89 267 G 0 3 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 324 1070 175 - . gene_id 1 ; sequence CbirOr5 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 324 1070 . - . LHQN01028641.1 exonerate:protein2genome:local exon 324 1070 . - . insertions 9 ; deletions 4 LHQN01028641.1 exonerate:protein2genome:local similarity 324 1070 175 - . alignment_id 1 ; Query CbirOr5 ; Align 1071 27 51 ; Align 1020 48 342 ; Align 672 162 267 ; Align 402 251 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 360 Query range: 27 -> 285 Target range: 1067 -> 296 28 : SerValGlnLeuAsnValTrpThrLeuLysProIleGlyThrTrpProLysSerProAspAr : 48 |||:!!|||! !||| !|||.!!:!!||| !||||||.!!||||||:!!||| SerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSer------Se 1067 : AGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCC------TC : 1013 49 : gSerTrpIleGluAlaValCysCysArgThrLeuHisAlaSerCysTyrGlyLeuLeuAlaL : 69 !||| :!!||| !:!! !! !|||! !|||:!!!.!! !|||||| ! !:!! !! rSerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuP 1012 : GTCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTAT : 950 70 : euIleLeuIleProCysGlyMetTyrIleValLeuGluMetLysAspPheTyrAsnGlnLeu : 89 !!! :!!|||||||||..!:!!:!!:!!:!!||||||! :!! !||||||!..:!!:!! heThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysVal 949 : TCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTG : 890 90 : LysLeuAlaSerAlaLeuSerPhePheMetMetSerValMetLysTyrCysAlaLeuIleVa : 110 |||:!! !.!! !!|||||| !!:::!!.!.!!!:!!!!:!..||| ! !|||:!::! LysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLe 889 : AAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCT : 827 111 : lHisGlnAlaAspIleArgLysCysValGluTyrIleGluGlyAspTrpArgAsnValArgT : 131 !!..!:: ! !|||||| ! ! ! !!.!.:!!!!:||| !|||||||||!....!! uArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetA 826 : GCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtga : 764 132 : yrThrGluAspArgAsnIleMetLeuLysAsnAlaAsnPheGlyArgArgLeuValValIle : 151 ||| :::...|||||||||||| !!|||!!.|||.!!||| ! !!.!:!! ! rgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSer 763 : gaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCT : 704 152 : CysGlyPhePheMetTyrGlyGlyIleLeuPheTyrTyrValAlaLeuProLeuThrArgAl : 172 ||| !.!!|||!!::!!|||||||||||| |||! !||| ! ! !!!!!|||! ! CysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMe 703 : TGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGAT : 641 173 : aLysIleThrAspGluAspGlyAsnMetThrTyrArgArgLeuValTyrProValProLysV : 193 ! :!!..!! !! !:!!! !!.!|||! !! ||| !||| !! |||:!! !|||! tValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysG 640 : GGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAG : 578 194 : alIleValAspThrArgArgSerProValAsnGluIlePheTyrPheIleGlnLeuLeuSer : 213 !:!!:!! ..! !! !!:! !!:!!||||||||| !! !!!. !|||!!!|||||| lyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSer 577 : GGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCC : 518 214 : GlyPheValAlaHisAsnIleThrValAlaAlaCysGlyLeuAlaAlaLeuLeuAlaMetHi : 234 ||||||:!!|||:!!!.!! !.!!:!!::!!.! .!!|||.!!::! !|||.!! || GlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHi 517 : GGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACA : 455 235 : sAlaCysGlyGlnLeu<->GlnValLeuIleSerTrpMetAsnHisLeuValAspGlyArgG : 254 ||||! !||||||||| !|||:!!:!:||| :!! !:!! !|||!.!|||. sAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgA 454 : CGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGAC : 392 255 : luGluValAsnAspThrValAspGluArgLeuAlaSerMetIleGlnLeuHisValArgIle : 274 ....!! !!!.||| ! ! !!!:..!:!! !!!!!!!::!::!! !|||:!!|||:!: rgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgVal 391 : GCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTG : 332 275 : LeuAsnPheIleSerLeuThrGluAspLeuLeu : 285 |||!!.! :!!!!!||| !!!: :!!||| LeuLys***ValCysLeuLeuAspLeuIleLeu 331 : TTGAAGTAAGTATGTTTGTTGGATTTGATTTTG : 297 vulgar: CbirOr14 27 285 . LHQN01028641.1 1067 296 - 360 M 18 54 G 2 0 M 192 576 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 297 1067 360 - . gene_id 1 ; sequence CbirOr14 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 297 1067 . - . LHQN01028641.1 exonerate:protein2genome:local exon 297 1067 . - . insertions 3 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local similarity 297 1067 360 - . alignment_id 1 ; Query CbirOr14 ; Align 1068 28 54 ; Align 1014 48 576 ; Align 435 240 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: LHQN01028838.1 Habropoda laboriosa contig28838, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 256 -> 294 Target range: 733 -> 551 257 : GluHisHisLeuArgValLeu{Se} >>>> Target Intron 1 >>>> {r}PheIleS : 267 |||.!.|||||||||||||||{!:} 68 bp {!}||||||| GluGluHisLeuArgValLeu{As}++ ++{n}PheIleS 733 : GAGGAACATTTGAGAGTGTTG{AA}gt.........................ag{C}TTCATAT : 635 268 : erArgMetGluSerLeuMetGlnHisIleCysLeuValGluLeuValGlyCysThrLeuAsnMe : 288 |||||!!:|||:!!:!!|||.!. ! |||!!!:!!||||||..! !!|||! !:!! !:! erArgIleGluAlaMetMetAsnLysAlaCysPheLeuGluLeuThrArgCysMetIleAlaVa 634 : CGCGCATAGAGGCAATGATGAACAAAGCGTGTTTCCTGGAGTTAACGAGGTGCATGATAGCTGT : 572 289 : tCysLeuLeuAlaTyrTyr : 294 :||| !|||!.!|||||| lCysAlaLeuGlyTyrTyr 571 : ATGCGCACTTGGATATTAT : 552 vulgar: CbirOr23 256 294 . LHQN01028838.1 733 551 - 103 M 7 21 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028838.1 exonerate:protein2genome:local gene 552 733 103 - . gene_id 1 ; sequence CbirOr23 ; gene_orientation + LHQN01028838.1 exonerate:protein2genome:local cds 711 733 . - . LHQN01028838.1 exonerate:protein2genome:local exon 711 733 . - . insertions 0 ; deletions 0 LHQN01028838.1 exonerate:protein2genome:local splice5 709 710 . - . intron_id 1 ; splice_site "GT" LHQN01028838.1 exonerate:protein2genome:local intron 643 710 . - . intron_id 1 LHQN01028838.1 exonerate:protein2genome:local splice3 643 644 . - . intron_id 0 ; splice_site "AG" LHQN01028838.1 exonerate:protein2genome:local cds 552 642 . - . LHQN01028838.1 exonerate:protein2genome:local exon 552 642 . - . insertions 0 ; deletions 0 LHQN01028838.1 exonerate:protein2genome:local similarity 552 733 103 - . alignment_id 1 ; Query CbirOr23 ; Align 734 257 21 ; Align 642 265 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 258 Query range: 15 -> 168 Target range: 420 -> 870 16 : AspAsnAspTyrSerLeuGlnValAsnArgTrpLeuLeuLysSerIleGlyAlaTrpProGluS : 37 ..!!:!||||||||||||||| !||||||||| !:!!||||||||||||.!!||||||:!!! SerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnP 421 : AGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGT : 484 38 : erSerMetLysTyrSerValThrArgAsnIleLeuLysThrValLeuArgLeuThrCysHisLe : 58 !||| ! !:!:!! !|||||||||! !::! :!!|||!.!:!!! !|||:!! heSerSer------AsnLeuGluArgAsnIleSerArg---IleLeuAsnValIleCysTyrTh 485 : TCTCGTCG------AACCTCGAGAGAAACATCTCTCGA---ATATTAAACGTGATCTGCTACAC : 538 59 : uLeuIleAlaPheThrValValProSerMetLeuTyrIleIlePheGluGluLysAspPheArg : 79 ! !||| !|||:!!:!!:!!|||!!! !|||:!!:!!!!:.!.|||:!! ! !||| ! rAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyr 539 : CGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTAC : 601 80 : LeuArgLeuLysAlaValGlyProPheSerHisCysLeuMetGlyGlyIleAsnTyrCysSerL : 101 !!:!:!!||| !:!!||| !!!!.||||||!! :!!.!. !! !|||!:!||| !! !| ThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetL 602 : ACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGC : 667 102 : euLeuHisHisGlySerHisIleArgArgSerIleGluHisMetGluAsnAspTrpArgMetAl : 122 |||||! !.. !!!.! !|||!.!!.!! !:!!.!.|||||||||!.!|||||||||! !.! euLeuLeuArgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrTh 668 : TGTTGCTGCGACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGAC : 730 123 : aLysArgGluHisAspArgGluValMetLeuArgAsnAlaArgIleGlyArgThrIleAlaGly : 143 ! |||:::... :::||||||||||||!:! !!|||!:!.!!.!!||| ! ||| ! rThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIle 731 : GacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATT : 793 144 : ValCysAlaLeuIleMetGlnGlyGlyIleLeuSerTyrAsnLeuAlaArgGlyMetSerProI : 165 !!||||||:!!.!!!!:!!.||||||||||||.!!||| !:!! !! !!.! !!! !!! PheCysAlaIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaSerThrThrM 794 : TTTTGTGCGATTTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTCCACCACGA : 859 166 : leIleGluVal : 168 !::!!! ||| etValValVal 860 : TGGTTGTCGTG : 870 vulgar: CbirOr17PSE 15 168 . LHQN01028951.1 420 870 + 258 M 24 72 G 2 0 M 8 24 G 1 0 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 421 870 258 + . gene_id 1 ; sequence CbirOr17PSE ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 421 870 . + . LHQN01028951.1 exonerate:protein2genome:local exon 421 870 . + . insertions 0 ; deletions 3 LHQN01028951.1 exonerate:protein2genome:local similarity 421 870 258 + . alignment_id 1 ; Query CbirOr17PSE ; Align 421 16 72 ; Align 493 42 24 ; Align 517 51 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr14 Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 241 Query range: 27 -> 165 Target range: 432 -> 840 28 : SerValGlnLeuAsnValTrpThrLeuLysProIleGlyThrTrpProLysSerProAspArgS : 49 |||:!!|||! !||| !|||.!!:!!||| !|||||||||||||||:!!! ! !| SerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPhe------SerS 433 : AGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTC------TCGT : 490 50 : erTrpIleGluAlaValCysCysArgThrLeuHisAlaSerCysTyrGlyLeuLeuAlaLeuIl : 70 || :!!||| ! ! !! !|||! !|||:!!!.!! !|||||| ! !:!! !!!! erAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSe 491 : CGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTC : 553 71 : eLeuIleProCysGlyMetTyrIleValLeuGluMetLysAspPheTyrAsnGlnLeuLysLeu : 91 :!!|||||||||..!:!!:!!:!!:!!||||||! ! !||||||!..:!!:!!|||:!! rIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIle 554 : GATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATA : 616 92 : AlaSerAlaLeuSerPhePheMetMetSerValMetLysTyrCysAlaLeuIleValHisGlnA : 113 !.!!:!!|||||| !!:::!!.!.!!!:!!!!:!..||| ! !|||:!::!!!..!:: LeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgL 617 : CTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTA : 682 114 : laAspIleArgLysCysValGluTyrIleGluGlyAspTrpArgAsnValArgTyrThrGluAs : 134 ! !|||!.! ! ! !|||.!.:!!!!:||| !|||||||||!....! ||| ysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLy 683 : AAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaa : 745 135 : pArgAsnIleMetLeuLysAsnAlaAsnPheGlyArgArgLeuValValIleCysGlyPhePhe : 155 :::...:::||||||||| !!|||!!.|||.!!||| ! !!.!:!!.!!|||!.!.!!||| sLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePhe 746 : gaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTC : 808 156 : MetTyrGlyGlyIleLeuPheTyrTyrVal : 165 !!::!!|||||||||||| |||! !||| IleHisGlyGlyIleLeuGlyTyrCysVal 809 : ATACACGGTGGTATACTTGGATATTGTGTT : 840 vulgar: CbirOr14 27 165 . LHQN01028951.1 432 840 + 241 M 18 54 G 2 0 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 433 840 241 + . gene_id 1 ; sequence CbirOr14 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 433 840 . + . LHQN01028951.1 exonerate:protein2genome:local exon 433 840 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 433 840 241 + . alignment_id 1 ; Query CbirOr14 ; Align 433 28 54 ; Align 487 48 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 301 Query range: 11 -> 163 Target range: 417 -> 870 12 : SerAsnAsnAspTyrSerLeuGlnLeuThrArgTrpPheLeuIleProIleAlaAlaTrpProA : 33 :!!!:!!:!|||||||||||||||! !!.!|||||| :!!! ! !|||!.!.!!||||||! AlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProG 418 : GCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCAC : 481 34 : rgAlaAlaProSerThrValGluLysIleSerLeuGlnAlaHisValLeuAlaCysTyrLeuLe : 54 :! !:!! !!!:! !! !..!!!.||||||! ! ! !:!!|||:!! |||||| ! lnPheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIle---CysTyrThrAl 482 : AGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATC---TGCTACACCGC : 541 55 : uIleValValValMetValProCysPheLeuTyrMetSerLeuGluGluAsnAspIleGlnMet : 75 !|||:!! !! !!!::!!||||||! |||:!!:!:! !||||||:!!... !.!! ! ! ! aIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThr 542 : AATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACG : 604 76 : LysLeuAsnAlaMetGlyProLeuSerHisTrpIleMetGlyThrIleAsnTyrTrpLeuLeuL : 97 |||:!!!!. !:!:||| !!||||||||||||:!:.!. !!! !|||!:!||| :!!|||| LysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuL 605 : AAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGT : 670 98 : euThrArgSerAsnAspIleArgGluCysValArgHisMetGluAsnAspTrpArgLeuValGl : 118 || !||| !!!!. !|||!.!.!.! !|||!.!|||||||||!.!||||||||| !..! euLeuArgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrTh 671 : TGCTGCGACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGac : 733 119 : nArgAlaAspAspGlnTrpValMetLeuArgTyrAlaArgIleGlyArgPheValAlaAlaPhe : 139 ||| ::: ::: |||||||||!:!||||||!:!.!!.!!|||!:!!.!||| !||| rArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePhe 734 : gagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTT : 796 140 : CysAlaValPheMetGlnSerGlyThrLeuLeuPheGlnValValLysAlaMetThrSerMetP : 161 ||||||:!!|||!!:!!..!!|||! !||| !!:! |||:!!! !||| |||!!!||| CysAlaIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaSerThrThrMetV 797 : TGTGCGATTTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTCCACCACGATGG : 862 162 : roValVal : 163 !|||||| alValVal 863 : TTGTCGTG : 870 vulgar: CbirOr23 11 163 . LHQN01028951.1 417 870 + 301 M 38 114 G 1 0 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 418 870 301 + . gene_id 1 ; sequence CbirOr23 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 418 870 . + . LHQN01028951.1 exonerate:protein2genome:local exon 418 870 . + . insertions 0 ; deletions 1 LHQN01028951.1 exonerate:protein2genome:local similarity 418 870 301 + . alignment_id 1 ; Query CbirOr23 ; Align 418 12 114 ; Align 532 51 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 146 Query range: 339 -> 394 Target range: 212 -> 41 340 : AspGlnCysGlnLysValGlyGluMetValTyrMetThrGluTrpTyrArgLeuHisHisLysT : 361 !!::!! ! |||||||||! !! ||||||||||||||||||||||||||| !!!.|||| GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 362 : hrAlaHisAspLeuIleLeuIleIleSerArgSerAsnThrValIleLysIleThrAlaGlyLy : 382 |||||! !! !!!!:!!:!!|||||||||||||||!:!! !||||||||||||||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 383 : sMetIleGlnLeuSer<-><->IleAlaThrPheGlyAspVal : 394 |.!.:!! ! ! !!!! :!!|||||||||||||||||| sPheValTyr***ThrSerPheValAlaThrPheGlyAspVal 85 : ATTCGTATACTGAACATCGTTTGTCGCAACATTTGGCGATGTG : 42 vulgar: CbirOr16 339 394 . LHQN01029187.1 212 41 - 146 M 48 144 G 0 6 M 7 21 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 42 212 146 - . gene_id 1 ; sequence CbirOr16 ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 42 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 42 212 . - . insertions 6 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 42 212 146 - . alignment_id 1 ; Query CbirOr16 ; Align 213 340 144 ; Align 63 388 21 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 140 Query range: 332 -> 387 Target range: 212 -> 41 333 : GluGlnCysLysThrValGlyGluLysAlaTyrMetThrAspTrpTyrLysLeuProHisLysT : 354 |||:!! !! ! !||||||! !|||!.!|||||||||!!:||||||::!||| !!!!.|||| GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 355 : hrAlaArgGlyLeuLeuLeuIleIleAlaArgSerSerAsnValIleLysIleThrAlaGlyLy : 375 |||||! !|||!!!:!!:!!||||||:!!|||||||||! ||||||||||||||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 376 : sLeuPheGlnLeuSer<-><->IleAlaThrPheGlyAspVal : 387 |!!! ! ! ! !!!! :!!|||||||||||||||||| sPheValTyr***ThrSerPheValAlaThrPheGlyAspVal 85 : ATTCGTATACTGAACATCGTTTGTCGCAACATTTGGCGATGTG : 42 vulgar: CbirOr23 332 387 . LHQN01029187.1 212 41 - 140 M 48 144 G 0 6 M 7 21 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 42 212 140 - . gene_id 1 ; sequence CbirOr23 ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 42 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 42 212 . - . insertions 6 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 42 212 140 - . alignment_id 1 ; Query CbirOr23 ; Align 213 333 144 ; Align 63 381 21 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 331 -> 376 Target range: 212 -> 77 332 : GlnGlnCysLysAsnIleGlyGluThrAlaTyrMetThrAspTrpTyrTyrLeuProHisLysT : 353 :!!:!! !! !!.:!!|||! !! !!.!|||||||||!!:|||||| ||| !!!!.|||| GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 354 : hrAlaArgAsnLeuIleLeuIleIleSerArgSerAsnValValIleLysIleThrAlaGlyLy : 374 |||||! !..!!!!:!!:!!|||||||||||||||!:!:!!||||||||||||||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 375 : sLeuVal : 376 |!!!||| sPheVal 85 : ATTCGTA : 78 vulgar: CbirOr21 331 376 . LHQN01029187.1 212 77 - 127 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 78 212 127 - . gene_id 1 ; sequence CbirOr21 ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 78 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 78 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 78 212 127 - . alignment_id 1 ; Query CbirOr21 ; Align 213 332 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 315 -> 359 Target range: 215 -> 83 316 : MetAspGlnCysLysLysValGlyGluAlaAlaTyrMetThrAsnTrpTyrTyrLeuProArgL : 337 !!:!!::!! !! |||||||||! ! !!.!|||||||||.!.|||||| ||| !!!:!| IleGluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnL 215 : ATCGAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAA : 152 338 : ysThrValPheAlaLeuIleLeuIleIleLeuArgSerArgIleThrValLysIleThrAlaAl : 358 |||||!.!.!!!.!!!!:!!:!!||||||! !||||||!!!!!:..!:!!||||||||||||!. ysThrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGl 151 : AAACTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGG : 89 359 : aLys : 359 !||| yLys 88 : AAAA : 84 vulgar: CbirOr17PSE 315 359 . LHQN01029187.1 215 83 - 108 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 84 215 108 - . gene_id 1 ; sequence CbirOr17PSE ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 84 215 . - . LHQN01029187.1 exonerate:protein2genome:local exon 84 215 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 84 215 108 - . alignment_id 1 ; Query CbirOr17PSE ; Align 216 316 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr16 Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 340 -> 394 Target range: 112 -> 280 341 : GlnCysGlnLysValGlyGluMetValTyrMetThrGluTrpTyrArgLeuHisHisLysThrA : 362 :!! ! |||||||||! !! ||||||||||||||||||||||||||| !!!.||||||| GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrA 113 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTG : 176 363 : laHisAspLeuIleLeuIleIleSerArgSerAsnThrValIleLysIleThrAlaGlyLysMe : 383 ||! !! !|||:!!:!!|||||||||||||||!:!! !||||||||||||||||||||||||.! laLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPh 177 : CTCTCGGTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATT : 239 384 : tIle<-><->GlnLeuSerIleAlaThrPheGlyAspVal : 394 .:!! !! !|||:!!|||||||||||||||||| eValTyr***ThrSerSerValAlaThrPheGlyAspVal 240 : CGTATACTGAACATCGTCTGTCGCAACATTTGGCGATGTG : 280 vulgar: CbirOr16 340 394 . LHQN01048470.1 112 280 + 153 M 44 132 G 0 6 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 113 280 153 + . gene_id 1 ; sequence CbirOr16 ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 113 280 . + . LHQN01048470.1 exonerate:protein2genome:local exon 113 280 . + . insertions 6 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 113 280 153 + . alignment_id 1 ; Query CbirOr16 ; Align 113 341 132 ; Align 251 385 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr23 Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 337 -> 387 Target range: 124 -> 280 338 : ValGlyGluLysAlaTyrMetThrAspTrpTyrLysLeuProHisLysThrAlaArgGlyLeuL : 359 ||||||! !|||!.!|||||||||!!:||||||::!||| !!!!.|||||||||! !||||||: ValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGlyLeuV 125 : GTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGGTTTGG : 188 360 : euLeuIleIleAlaArgSerSerAsnValIleLysIleThrAlaGlyLysLeuPhe<-><->Gl : 378 !!:!!||||||:!!|||||||||! ||||||||||||||||||||||||!!! ! alMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheValTyr***Th 189 : TAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTATACTGAAC : 251 379 : nLeuSerIleAlaThrPheGlyAspVal : 387 !! !|||:!!|||||||||||||||||| rSerSerValAlaThrPheGlyAspVal 252 : ATCGTCTGTCGCAACATTTGGCGATGTG : 280 vulgar: CbirOr23 337 387 . LHQN01048470.1 124 280 + 145 M 40 120 G 0 6 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 125 280 145 + . gene_id 1 ; sequence CbirOr23 ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 125 280 . + . LHQN01048470.1 exonerate:protein2genome:local exon 125 280 . + . insertions 6 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 125 280 145 + . alignment_id 1 ; Query CbirOr23 ; Align 125 338 120 ; Align 251 378 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr21 Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 332 -> 386 Target range: 112 -> 280 333 : GlnCysLysAsnIleGlyGluThrAlaTyrMetThrAspTrpTyrTyrLeuProHisLysThrA : 354 :!! !! !!.:!!|||! !! !!.!|||||||||!!:|||||| ||| !!!!.||||||| GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrA 113 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTG : 176 355 : laArgAsnLeuIleLeuIleIleSerArgSerAsnValValIleLysIleThrAlaGlyLysLe : 375 ||! !..!|||:!!:!!|||||||||||||||!:!:!!||||||||||||||||||||||||!! laLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPh 177 : CTCTCGGTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATT : 239 376 : uVal<-><->GlnLeuSerIleAlaThrPheSerAspVal : 386 !||| !! !|||:!!|||||||||.!!|||||| eValTyr***ThrSerSerValAlaThrPheGlyAspVal 240 : CGTATACTGAACATCGTCTGTCGCAACATTTGGCGATGTG : 280 vulgar: CbirOr21 332 386 . LHQN01048470.1 112 280 + 132 M 44 132 G 0 6 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 113 280 132 + . gene_id 1 ; sequence CbirOr21 ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 113 280 . + . LHQN01048470.1 exonerate:protein2genome:local exon 113 280 . + . insertions 6 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 113 280 132 + . alignment_id 1 ; Query CbirOr21 ; Align 113 333 132 ; Align 251 377 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr17PSE Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 315 -> 371 Target range: 106 -> 280 316 : MetAspGlnCysLysLysValGlyGluAlaAlaTyrMetThrAsnTrpTyrTyrLeuProArgL : 337 !!:! :!! !! |||||||||! ! !!.!|||||||||.!.|||||| ||| !!!:!| IleGlyGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnL 107 : ATCGGAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAA : 170 338 : ysThrValPheAlaLeuIleLeuIleIleLeuArgSerArgIleThrValLysIleThrAlaAl : 358 |||||!.!.!!!.!|||:!!:!!||||||! !||||||!!!!!:..!:!!||||||||||||!. ysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGl 171 : AAACTGCTCTCGGTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGG : 233 359 : aLysValPheHis<-><->MetSerIleAlaThrPheGlyValVal : 371 !||| !! ! :!! !|||:!!||||||||||||! !||| yLysPheValTyr***ThrSerSerValAlaThrPheGlyAspVal 234 : AAAATTCGTATACTGAACATCGTCTGTCGCAACATTTGGCGATGTG : 280 vulgar: CbirOr17PSE 315 371 . LHQN01048470.1 106 280 + 111 M 47 141 G 0 6 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 107 280 111 + . gene_id 1 ; sequence CbirOr17PSE ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 107 280 . + . LHQN01048470.1 exonerate:protein2genome:local exon 107 280 . + . insertions 6 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 107 280 111 + . alignment_id 1 ; Query CbirOr17PSE ; Align 107 316 141 ; Align 254 363 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 119 -> 242 Target range: 203846 -> 204218 120 : AspArgIleMetLeuAlaArgGluThrAspLeuGluIleMetLeuAspAsnValLysP : 139 ||| !! !! !||| !! !!!: !!!: !!!::!:|||:!!.!......!::!. AspTrpAlaLysLeuLysThrAspPheGluArgAspValMetIleGlnArgThrArgI 203847 : GATTGGGCAAAGTTGAAAACGGATTTCGAAAGAGACGTGATGATACAACGAACACGAA : 203904 140 : heGlyArgArgLeuSerIleValCysThrValSerMetTyrThrAlaHisValLeuAr : 158 !! !||| ! !||||||:!! !! !!.!! !!!:!:!|||||| :!!!!!! leThrArgAlaThrSerIleLeuSerTyrAlaLeuIlePheThrAlaValMetPheMe 203905 : TTACCCGAGCAACCAGTATACTGAGTTATGCGTTAATATTTACTGCAGTAATGTTCAT : 203961 159 : gAsnValLeuProPheValLysProArgThrGlnIleIleGlyAsnGluThrValArg : 177 !! ||||||||| ..! !! !|||::! !:!! !||||||||| !! ! tIleValLeuProArgThrGlyIleThrThrArgTyrValThrAsnGluThrAsnIle 203962 : GATAGTCCTACCAAGAACCGGTATTACCACTAGATACGTAACAAACGAAACCAACATA : 204018 178 : LeuLeuLeuTyrProVal<->TyrArgGlyLeuPheAspValArgAsnSerProTyrP : 196 ! !|||!:!|||||| ::::::|||::: !.!.!!!||||||| LysLysLeuPheProValProThrTyrTyrIleTyrAspIleSerGluThrProTyrP 204019 : AAAAAGCTTTTTCCGGTGCCaacttattatatttacgatataTCTGAAACTCCATATT : 204078 197 : heGluIleThrGlnIleValGlnMetMetGlyGlyTyrValIleTyrThrLeuThrIl : 215 ||||||||! ! :!!:!!|||||| ! ! :!!!!: !! ! !|| heGluIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIl 204079 : TTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACAT : 204135 216 : eSerAlaCysSerIleAlaAlaValPheValMetHisThrArgGlyGlnIleArgIle : 234 |.!!!.! !!:!.!! !!.!:!!!!.:!!:!:|||! ! !!||||||:!:..!! ! eGlyValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsn 204136 : TGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAAT : 204192 235 : LeuMetLeuLysMetAspAspLeu : 242 ||| !::!:!:! :!!:!! LeuArgThrArgLeuAlaAsnIle 204193 : CTTCGTACACGACTTGCAAACATA : 204218 vulgar: CbirOr27 119 242 . KQ414617.1 203846 204218 + 109 M 64 192 G 0 3 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203847 204218 109 + . gene_id 1 ; sequence CbirOr27 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203847 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 203847 204218 . + . insertions 3 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203847 204218 109 + . alignment_id 1 ; Query CbirOr27 ; Align 203847 120 192 ; Align 204042 184 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 343 -> 395 Target range: 1387622 -> 1387778 344 : SerLysIleAlaSerAlaValTyrGlyIleAsnTrpTyrAspLeuProGlyHisLy : 362 ..!:::|||.!!..!:!:||||||...... |||||||||||| ! !!..:! GluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProArgGl 1387623 : gAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCGAGA : 1387677 363 : sAlaLeuHisLeuValMetIleIleThrMetSerGlnTyrProProLysLeuThrA : 381 !|||! :::::::::|||||| |||||| ! ! !! !||||||| uAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuThrA 1387678 : AGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCACTG : 1387734 382 : laGlyLysPheValAspPheSerLeuSerThrPheSerThrVal : 395 ||||||||||||||:!!.!!||||||:!!.!!|||:!!!..||| laGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387735 : CGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: CbirOr29 343 395 . KQ414716.1 1387622 1387778 + 105 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387623 1387778 105 + . gene_id 1 ; sequence CbirOr29 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387623 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387623 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387623 1387778 105 + . alignment_id 1 ; Query CbirOr29 ; Align 1387623 344 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 347 -> 397 Target range: 1387628 -> 1387778 348 : ValAlaSerAlaValTyrGlyIleAsnTrpTyrAspLeuSerGlyLysLysAlaLe : 366 :!!.!!..!:!:||||||...... ||||||||||||!.! !::!:!!|||! IleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProArgGluAlaAr 1387629 : ATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCGAGAAGCTCg : 1387683 367 : uAspLeuLysLeuIleIleAlaMetSerArgTyrProValLysLeuThrAlaGlyL : 385 ::: ||||||||| |||!:! ! !:!!! !||||||||||||| gIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuThrAlaGlyL 1387684 : tattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCACTGCGGGCA : 1387740 386 : ysPheValAspLeuSerLeuAsnThrPheGlyAlaVal : 397 ||||||||:!!||||||||| !.!!|||!.! ||| ysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387741 : AATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: CbirOr30 347 397 . KQ414716.1 1387628 1387778 + 102 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387629 1387778 102 + . gene_id 1 ; sequence CbirOr30 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387629 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387629 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387629 1387778 102 + . alignment_id 1 ; Query CbirOr30 ; Align 1387629 348 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr37 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 330 -> 395 Target range: 1395329 -> 1395911 331 : ThrLeuAlaHisGlyValTyrGluThrProTrpTyrAspPheAspThrLysIleMe : 349 :!!:!!::!:!!!.!!.!|||...:!!||||||||| !.!.||| !!:!! !! SerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGlnAspAr 1395330 : TCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCAAGACAG : 1395384 350 : tLysAsnLeuProMetValMetPheArgGlyLysValProHisGlnIleThrAlaG : 368 ! ! !:!! !:!::!!|||.!.|||..!:!! !! ! !|||||||||| gHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleThrAlaG 1395385 : ACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCACCGCTG : 1395441 369 : lyLysPheIleProMetAsnLeuPheSerTyrLysGlu >>>> Target Intr : 381 ||||||||!!: !:!!::!||| .!!!:! !.!. 387 bp lyLysPheMetAspLeuSerLeuGluGlyPheAlaAsn++ 1395442 : GAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATgt................ : 1395482 382 : on 1 >>>> IleLeuLysAlaThrGlySerTyrLeuSerValLeuArgValMet : 395 ||||||||||||:!!!.!||||||:!!||||||||| !!.!||| ++IleLeuLysAlaSerAlaSerTyrIleSerValLeuTyrAlaMet 1395483 : .........agatcTTAAAGGCTTCTGCATCGTACATATCTGTACTGTATGCGATG : 1395909 vulgar: CbirOr37 330 395 . KQ414716.1 1395329 1395911 + 103 M 50 150 5 0 2 I 0 383 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395330 1395911 103 + . gene_id 1 ; sequence CbirOr37 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1395330 1395479 . + . KQ414716.1 exonerate:protein2genome:local exon 1395330 1395479 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1395480 1395481 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1395480 1395866 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1395865 1395866 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1395867 1395911 . + . KQ414716.1 exonerate:protein2genome:local exon 1395867 1395911 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395330 1395911 103 + . alignment_id 1 ; Query CbirOr37 ; Align 1395330 331 150 ; Align 1395867 381 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr36 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 317 -> 384 Target range: 1387619 -> 1387955 318 : SerThrAlaLeuSerTyrAlaIleTyrAspTyrAsnTrpTyrGlnLeuProThrGl : 336 ||| ! !:!!!!! ! :!::::|||:::::: ||||||.!.||| ! !! ! SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 337 : yIleAlaLysAsnPheGlnIleMetLeuMetArgAlaSerIleProHisGlnLeuT : 355 ! !|||::: ::::::::::::|||:!!..!! ! ! !|||| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 356 : hrAlaGlyLysPheValSerLeuAsnMetLeuThrPheLysAsp >>>> Targe : 370 |||||||||||||||||!:!|||::!:!! !.!!||| :!: hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt.......... : 1387778 371 : t Intron 1 >>>> IleLeuLysSerThrValSerTyrLeuSerValLeuArg : 382 135 bp :::||||||:!!:!!!.!||||||:!!|||||||||!.! ++MetLeuLysAlaSerAlaSerTyrValSerValLeuHis 1387779 : ...............agatgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTTGCAT : 1387947 383 : ValMet : 384 !.!||| AlaMet 1387948 : GCAATG : 1387955 vulgar: CbirOr36 317 384 . KQ414716.1 1387619 1387955 + 106 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387955 106 + . gene_id 1 ; sequence CbirOr36 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387955 106 + . alignment_id 1 ; Query CbirOr36 ; Align 1387620 318 156 ; Align 1387911 370 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 343 -> 395 Target range: 1345567 -> 1345723 344 : SerLysIleAlaSerAlaValTyrGlyIleAsnTrpTyrAspLeuProGlyHisLy : 362 |||:!!!!: !..!||| !||| !! !||||||||||||||||||! ! ! ! SerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLysTy 1345568 : TCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAAATA : 1345622 363 : sAlaLeuHisLeuValMetIleIleThrMetSerGlnTyrProProLysLeuThrA : 381 .!!! ! |||:!!.!. !|||.!! |||||| ! ||| !! ! ||||||| rThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuThrA 1345623 : CACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAG : 1345679 382 : laGlyLysPheValAspPheSerLeuSerThrPheSerThrVal : 395 ||||||||||| !! |||||||||..!||||||.!!! !||| laGlyLysPheTyrValPheSerLeuGluThrPheGlyIleVal 1345680 : CTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCGTG : 1345723 vulgar: CbirOr29 343 395 . KQ414782.1 1345567 1345723 + 118 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345568 1345723 118 + . gene_id 1 ; sequence CbirOr29 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345568 1345723 . + . KQ414782.1 exonerate:protein2genome:local exon 1345568 1345723 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345568 1345723 118 + . alignment_id 1 ; Query CbirOr29 ; Align 1345568 344 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr36 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 317 -> 387 Target range: 1345564 -> 1345852 318 : SerThrAlaLeuSerTyrAlaIleTyrAspTyrAsnTrpTyrGlnLeuProThrGl : 336 |||:!!! !:!!..! ! ||| !||| ! !|||||||||.!.|||||| ! SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 337 : yIleAlaLysAsnPheGlnIleMetLeuMetArgAlaSerIleProHisGlnLeuT : 355 ! !.!!::!:::!!. !.!! :!! |||:!!..!! ||| ! |||| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 356 : hrAlaGlyLysPheValSerLeuAsnMetLeuThrPheLysAsp >>>> Targe : 370 |||||||||||||| ! !!!!::::!: !|||||| ! hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIle++ 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCgt.......... : 1345723 371 : t Intron 1 >>>> IleLeuLysSerThrValSerTyrLeuSerValLeuArg : 382 78 bp |||:!!|||:!!:!!:!!:!!|||||||||||||||!:! ++IleValLysAlaSerMetAlaTyrLeuSerValLeuLys 1345724 : ...............agATAGTAAAAGCGTCGATGGCCTATCTTTCCGTTCTGAAA : 1345835 383 : ValMetMetAsnGlu : 387 !!!:!!: ||| SerIleIle***Glu 1345836 : AGCATTATCTGAGAA : 1345852 vulgar: CbirOr36 317 387 . KQ414782.1 1345564 1345852 + 112 M 52 156 5 0 2 I 0 74 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345852 112 + . gene_id 1 ; sequence CbirOr36 ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345565 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345852 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345852 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345852 112 + . alignment_id 1 ; Query CbirOr36 ; Align 1345565 318 156 ; Align 1345799 370 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 345 -> 397 Target range: 1345567 -> 1345723 346 : SerThrValAlaSerAlaValTyrGlyIleAsnTrpTyrAspLeuSerGlyLysLy : 364 ||| !:!! !..!||| !||| !! !||||||||||||||| !!! !||| ! SerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLysTy 1345568 : TCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAAATA : 1345622 365 : sAlaLeuAspLeuLysLeuIleIleAlaMetSerArgTyrProValLysLeuThrA : 383 .!!! !...|||! !!!! !|||||| |||!:! ! ||| ! ! ||||||| rThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuThrA 1345623 : CACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAG : 1345679 384 : laGlyLysPheValAspLeuSerLeuAsnThrPheGlyAlaVal : 397 ||||||||||| !! !!!||||||.!.||||||||| !||| laGlyLysPheTyrValPheSerLeuGluThrPheGlyIleVal 1345680 : CTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCGTG : 1345723 vulgar: CbirOr30 345 397 . KQ414782.1 1345567 1345723 + 108 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345568 1345723 108 + . gene_id 1 ; sequence CbirOr30 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345568 1345723 . + . KQ414782.1 exonerate:protein2genome:local exon 1345568 1345723 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345568 1345723 108 + . alignment_id 1 ; Query CbirOr30 ; Align 1345568 346 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 338 -> 406 Target range: 1345564 -> 1345846 339 : SerSerGlnIleGlySerValCysTyrMetIleAsnTrpTyrGlnIleSerProLy : 357 ||||||:!!!!: !..!!.!||||||.!.! !|||||||||.!.:!! !! !|| SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 358 : sLeuValArgSerIleIleMetIleIleAlaMetSerSerHisProThrLysLeuT : 376 |! !..!||||||:!!|||.!. !|||||| |||..! ! |||:!! ! |||| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 377 : hrAlaGlyGlyMetValAspLeuSerLeuSerThrPheGlyAsn >>>> Targe : 391 |||||||| !.!. !! !!!||||||..!|||||||||! ! hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIle++ 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCgt.......... : 1345723 392 : t Intron 1 >>>> ValMetLysThrSerIleAlaTyrLeuSerPheLeuArg : 403 78 bp :!!:!:|||.!!|||!!:|||||||||||| !!|||!:! ++IleValLysAlaSerMetAlaTyrLeuSerValLeuLys 1345724 : ...............agATAGTAAAAGCGTCGATGGCCTATCTTTCCGTTCTGAAA : 1345835 404 : ThrLeuVal : 406 !:!:!!:!! SerIleIle 1345836 : AGCATTATC : 1345846 vulgar: CbirOr33 338 406 . KQ414782.1 1345564 1345846 + 150 M 52 156 5 0 2 I 0 74 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345846 150 + . gene_id 1 ; sequence CbirOr33 ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345565 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345846 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345846 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345846 150 + . alignment_id 1 ; Query CbirOr33 ; Align 1345565 339 156 ; Align 1345799 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr37 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 307 -> 381 Target range: 51768 -> 52050 308 : IleLeuThrMetLeuValGlnLeuTyrLeuTyrCysTyrAlaGlyAspArgLeuGluSer : 327 :!::!! !:!!:!!:!!||||||!:!||||||||||||!.!|||!!:||||||... ! ValValTyrValMetLeuGlnLeuPheLeuTyrCysTyrValGlyGluArgLeuSerVal 51769 : GTGGTTTACGTGATGCTACAATTATTCTTGTATTGTTACGTGGGTGAAAGGCTTTCCGTT : 51826 328 : Ile >>>> Target Intron 1 >>>> ThrGlyThrLeuAlaHisGlyValTyrG : 338 60 bp !:!! ! !:!!|||:!!!.!!.!|||! Glu++ ++SerValGluIleAlaAsnAlaAlaTyrA 51827 : GAGgt.........................agAGCGTTGAAATAGCTAACGCGGCATACG : 51919 339 : luThrProTrpTyrAspPheAspThrLysIleMetLysAsnLeuProMetValMetPheA : 358 !::!! !||||||:!!!!...! !!|||! ! ||| |||! !!!::!!||| | spSerGluTrpTyrAsnLeuSerProLysAsnAlaLysLeuLeuLeuIleIleMetArgA 51920 : ATTCTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTGCTACTAATTATCATGCGAC : 51979 359 : rgGlyLysValProHisGlnIleThrAlaGlyLysPheIleProMetAsnLeuPheSerT : 378 ||!.!!:!:!!|||! |||||||||||||||!:!||| ! !!.!.!.!|||.!. !| rgAlaArgLeuProLeuGlnIleThrAlaGlyArgPheAlaThrPheThrLeuMetLeuT 51980 : GAGCCAGGTTACCTCTACAAATCACTGCAGGTAGATTTGCTACTTTCACTCTGATGCTGT : 52039 379 : yrLysGluIle : 381 ||..!:!!:!: yrSerGlnVal 52040 : ATTCACAGGTa : 52050 vulgar: CbirOr37 307 381 . KQ414804.1 51768 52050 + 150 M 21 63 5 0 2 I 0 56 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51769 52050 150 + . gene_id 1 ; sequence CbirOr37 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51769 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51769 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52050 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52050 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51769 52050 150 + . alignment_id 1 ; Query CbirOr37 ; Align 51769 308 63 ; Align 51892 329 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr37 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 297 -> 392 Target range: 33837 -> 34659 298 : AsnIleAlaAlaLeuLysHisValValLeuIleLeuThrMetLeuValGlnLeuTyrLeu : 317 |||:!: ! !||| !|||:!!!!!:!!! ! !!!:||||||!!.:!!|||:!! AsnValGlnLeuLeuPhePheValLeuPheValCysPheIleLeuValHisIleTyrIle 33838 : AACGTGCAATTGCTTTTCTTCGTGCTGTTCGTATGCTTCATCCTTGTACACATCTACATT : 33895 318 : TyrCysTyrAlaGlyAspArgLeuGluSerIle >>>> Target Intron 1 >>>> : 329 ||||||||| !|||!!:! !||| !!! ! 454 bp TyrCysTyrIleGlyGluMetLeuLeuThrHis+- 33896 : TATTGTTACATAGGAGAGATGCTACTCACACATgc......................... : 33933 330 : ThrGlyThrLeuAlaHisGlyValTyrGluThrProTrpTyrAspPheAspThrLysI : 348 !:! !! !:!!::!:!!..!!.!||||||:!! !||||||:!! !!... !! ! ++SerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProProG 33934 : agAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCAG : 34442 349 : leMetLysAsnLeuProMetValMetPheArgGlyLysValProHisGlnIleThrAlaG : 368 ! ||| !||| !.!.:!!||| !||| ! !|||! ! :!:||||||| luAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAlaG 34443 : AAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCAG : 34502 369 : lyLysPheIleProMetAsnLeuPheSerTyrLysGlu >>>> Target Intron 2 : 381 ||||||||! ! !!.!.::!:!! ! !!:!!.. 83 bp lyLysPheSerThrPheSerMetGluMetPheSerThr++ 34503 : GAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt.................... : 34543 382 : >>>> IleLeuLysAlaThrGlySerTyrLeuSerValLeu : 392 |||||||||.!!.!! !.!!||||||||||||||| ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeu 34544 : .....agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTC : 34659 vulgar: CbirOr37 297 392 . KQ414804.1 33837 34659 + 117 M 31 93 5 0 2 I 0 450 3 0 2 M 52 156 5 0 2 I 0 79 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33838 34659 117 + . gene_id 2 ; sequence CbirOr37 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33838 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33838 33930 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 1 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 1 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34659 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34659 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33838 34659 117 + . alignment_id 2 ; Query CbirOr37 ; Align 33838 298 93 ; Align 34385 329 156 ; Align 34624 381 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 345 -> 397 Target range: 39974 -> 40130 346 : IleAlaSerAlaValTyrGlyIleAsnTrpTyrAspLeuProGlyHisLysAlaLeuHis : 365 |||!.!..!:!!!.!|||! ! !|||||||||||||||||| ! ! ! |||:!! IleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHisAlaValSer 39975 : ATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCATGCTGTTTCG : 40032 366 : LeuValMetIleIleThrMetSerGlnTyrProProLysLeuThrAlaGlyLysPheVal : 385 ||||||!!::!:||| ! :!!||| !! !:!!:!!||||||||||||||| ! LeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGlyLysPheSer 40033 : TTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGT : 40092 386 : AspPheSerLeuSerThrPheSerThrValLeuArg : 397 !|||||||||..! !|||!:!.!!||| !||| ProPheSerLeuGluLeuPheAsnAlaValSerArg 40093 : CCCTTTTCTCTCGAGCTGTTTAACGCTGTGAGTCGA : 40130 vulgar: CbirOr29 345 397 . KQ414804.1 39974 40130 + 118 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39975 40130 118 + . gene_id 1 ; sequence CbirOr29 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39975 40130 . + . KQ414804.1 exonerate:protein2genome:local exon 39975 40130 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39975 40130 118 + . alignment_id 1 ; Query CbirOr29 ; Align 39975 346 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 317 -> 395 Target range: 33852 -> 34543 318 : TyrPheIleLeuPheIleSer<->LeuSerPheAsnPheLeuIlePheCysTyrIleGly : 336 !:!|||:!:||||||:!!!!! :!! ! ! :!!.!!! !|||!:!|||||||||||| PhePheValLeuPheValCysPheIleLeuValHisIleTyrIleTyrCysTyrIleGly 33853 : TTCTTCGTGCTGTTCGTATGCTTCATCCTTGTACACATCTACATTTATTGTTACATAGGA : 33910 337 : GluLeuLeuValGluGlu >>>> Target Intron 1 >>>> TyrSerLysIleA : 347 |||:!!|||:!! !.!. 454 bp !!!!:!!!!:: GluMetLeuLeuThrHis+- ++SerArgGluMetS 33911 : GAGATGCTACTCACACATgc.........................agAGCAGAGAAATGA : 34397 348 : laSerAlaValTyrGlyIleAsnTrpTyrAspLeuProGlyHisLysAlaLeuHisLeuV : 367 :!!:!:!!!.!|||! ! !|||||||||:!!:!! !! !! :!!||| ! !|||: erAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProProGluAlaLysCysLeuL 34398 : GCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCAGAAGCCAAGTGCCTTT : 34457 368 : alMetIleIleThrMetSerGlnTyrProProLysLeuThrAlaGlyLysPheValAspP : 387 !!.!.|||!!: !! !!! !|||! ! |||||||||||||||||| ! !| euPheIleMetHisArgThrAlaArgProLeuCysLeuThrAlaGlyLysPheSerThrP 34458 : TATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCAGGAAAATTCAGTACCT : 34517 388 : heSerLeuSerThrPheSerThrVal : 395 |||||:!!..!! !|||||||||||| heSerMetGluMetPheSerThrVal 34518 : TCTCCATGGAAATGTTCAGTACTGTA : 34543 vulgar: CbirOr29 317 395 . KQ414804.1 33852 34543 + 116 M 7 21 G 0 3 M 18 54 5 0 2 I 0 450 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33853 34543 116 + . gene_id 2 ; sequence CbirOr29 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33853 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33853 33930 . + . insertions 3 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 1 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34543 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34543 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33853 34543 116 + . alignment_id 2 ; Query CbirOr29 ; Align 33853 318 21 ; Align 33877 325 54 ; Align 34385 343 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 116 -> 272 Target range: 36572 -> 37037 117 : ValAsnGlnMetGluAspAspTrpArgIleValArgTyrGlnAspHisArgLysMetMet : 136 :!!!:!|||!!: ||||||||| ! ! !! ! :!!! !!||| ! ! !||| MetSerGlnIlePheAspAspTrpAlaGluProIleProGluValAspArgHisThrMet 36573 : ATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACGATG : 36630 137 : LeuAspAsnAlaLeuValGlyArgArgLeuThrThrLeuSerValIlePheLeuTyrThr : 156 ||| ! !.!||| !:!!.!!|||! !:!!:!!! !:!!!!! !|||.!. !|||..! LeuLysThrAlaLysIleSerArgMetIleSerIleValCysSerIleLeuThrTyrVal 36631 : CTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTCTGTTCTATCCTGACGTATGTC : 36690 157 : GlyGlyLeuSerTyrHisIleIleLeuProPheSerThrLysLysGlyLeuAsnAsnThr : 176 !! !|||:!!!:! !:!!! ! !!::|||!:!! !:!!..! !:::.!. ! MetValLeuAlaPheLeuSerLeuGlnIleTrpSerSerMetGlnAsnThrSerGluPhe 36691 : ATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGCAGCATGCAAAACACCTCGGAGTTC : 36750 177 : PheThrAsnLysProLeuIleTyrGlnGlyTyrAspValTyrPheAspSerGlnAlaSer : 196 !..!... !! !|||||| !!:! !:!|||!!!.!. !||| AsnValGlyGlyLeuLeuIleProAlaThrPhePro------TyrAspThrAsnLysSer 36751 : AACGTAGGAGGACTACTTATCCCGGCCACATTTCCA------TACGACACGAATAAAAGT : 36804 197 : ProAlaTyrAspIleValPheSerValHisCysValSerAlaValIleGlnTyrAsnIle : 216 ||| !|||!!:|||..!!:: !! !!!.! !|||.!!.!!|||:!:... ! ! ProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCys 36805 : CCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGT : 36864 217 : ThrThrAlaAlaCysSerLeuAlaAlaIlePheValMetHisValCysGlyGlnValGln : 236 !:!!..! ! !!!!!!!!.!|||:!!.!!|||:!:|||:!!|||||||||:!! TyrSerCysPheAspThrPheValAlaValLeuValLeuHisIleCysGlyGlnLeuThr 36865 : TATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACT : 36924 237 : IleLeuMetThrMetLeuGlyAspLeuValGluGlyGlu<->ArgAspLysGlyThrSer : 255 :!!||| ! ! |||! !:!!|||!.!.!. ! ! !:!|||!!. !!:!!.! ValLeuArgIleAlaLeuGluAsnLeuAlaAsnThrThrIleLysAspAsnTyrSerLys 36925 : GTTCTCCGCATTGCCCTCGAGAATCTTGCTAACACGACAATAAAAGACAACTACAGCAAG : 36984 256 : ValGluGluArgLeuGlyValIleAlaArgTyrHisValArgValLeuArg : 272 !!:!!|||||||||||| !|||!.!!.! !!. !!:!:!!!!!||| PheGlnGluArgLeuGlyTyrIleValHisArgGlnAsnGlnLeuPheArg 36985 : TTCCAAGAACGATTAGGATACATTGTGCACAGGCAGAATCAATTGTTCAGG : 37037 vulgar: CbirOr29 116 272 . KQ414804.1 36572 37037 + 102 M 72 216 G 2 0 M 59 177 G 0 3 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36573 37037 102 + . gene_id 3 ; sequence CbirOr29 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36573 37037 . + . KQ414804.1 exonerate:protein2genome:local exon 36573 37037 . + . insertions 3 ; deletions 2 KQ414804.1 exonerate:protein2genome:local similarity 36573 37037 102 + . alignment_id 3 ; Query CbirOr29 ; Align 36573 117 216 ; Align 36789 191 177 ; Align 36969 250 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr36 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 305 -> 384 Target range: 39929 -> 40244 306 : PheTyrThrPheAlaGlyAspCysLeuGluMetArgSerThrAlaLeuSerTyrAlaIle : 325 ||| !!|||::: ...... ||||||!.!:!!.!! ! :!! ! PheAsnThrTyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAla 39930 : TTCAATACttacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCA : 39987 326 : TyrAspTyrAsnTrpTyrGlnLeuProThrGlyIleAlaLysAsnPheGlnIleMetLeu : 345 ||||||! !|||||||||.!.|||||| !! ! !||| :::!!. |||:!!:!! TyrAspCysAsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIle 39988 : TACGACTGTAACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATA : 40047 346 : MetArgAlaSerIleProHisGlnLeuThrAlaGlyLysPheValSerLeuAsnMetLeu : 365 ||||||..!:!: !! !|||:!!||||||||||||||| ! !!!!!::!:!: ! CysArgAlaGlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGlu 40048 : TGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAG : 40107 366 : ThrPheLysAsp >>>> Target Intron 1 >>>> IleLeuLysSerThrValS : 376 !|||!!.! ! 78 bp :!!||||||!!!:!!!.!. LeuPheAsnAla++ ++ValLeuLysThrSerAlaG 40108 : CTGTTTAACGCTgt.........................agGTTTTAAAAACGTCTGCTG : 40218 377 : erTyrLeuSerValLeuArgValMet : 384 !!|||||||||||||||! !!.!||| lyTyrLeuSerValLeuLeuAlaMet 40219 : GATATCTTTCCGTGTTGCTAGCTATG : 40244 vulgar: CbirOr36 305 384 . KQ414804.1 39929 40244 + 125 M 64 192 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39930 40244 125 + . gene_id 1 ; sequence CbirOr36 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39930 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39930 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40244 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40244 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39930 40244 125 + . alignment_id 1 ; Query CbirOr36 ; Align 39930 306 192 ; Align 40200 370 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr36 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 312 -> 381 Target range: 34369 -> 34659 313 : CysLeuGluMetArgSerThrAlaLeuSerTyrAlaIleTyrAspTyrAsnTrpTyrGln : 332 ||| ! !.!.!:!|||! !! !:!!||| !!:!! !|||!!:! |||||||||.!. CysGlyIlePheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsn 34370 : tGTGGTATATTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAAC : 34427 333 : LeuProThrGlyIleAlaLysAsnPheGlnIleMetLeuMetArgAlaSerIleProHis : 352 :!! !! !! ! !|||||| !.!! !.!!!!::!! |||.!!:!! !|||! ! ValSerProProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeu 34428 : GTCTCACCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTT : 34487 353 : GlnLeuThrAlaGlyLysPheValSerLeuAsnMetLeuThrPheLysAsp >>>> Ta : 370 |||||||||||||||||| !!!!!!!::!||| !! !|||!.. ! CysLeuThrAlaGlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34488 : TGCTTGACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt....... : 34543 371 : rget Intron 1 >>>> IleLeuLysSerThrValSerTyrLeuSerValLeu : 381 83 bp |||||||||!!!.!!:!!.!!||||||||||||||| ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeu 34544 : ..................agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTC : 34659 vulgar: CbirOr36 312 381 . KQ414804.1 34369 34659 + 102 M 57 171 5 0 2 I 0 79 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34370 34659 102 + . gene_id 2 ; sequence CbirOr36 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34370 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34370 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34659 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34659 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34370 34659 102 + . alignment_id 2 ; Query CbirOr36 ; Align 34370 313 171 ; Align 34624 370 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 330 -> 392 Target range: 39938 -> 40124 331 : TyrIleGlyGluIleLeuSerGluGlnCysGlyGlnIleGlyAspThrAlaTyrMetThr : 350 |||||| :::||| ::: ! ! !||||||.!.:!!|||||| ! TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 351 : AsnTrpTyrLeuLeuArgArgAsnAsnAlaValGlyPheValLeuIleIleLeuLysSer : 370 ||||||||| !|||! !! !!!.:!!||||||..!!!.|||:!!:!:|||! !::::!! AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 371 : AsnValValValLysIleThrAlaGlyLysMetIleGluLeuSerLeuSerThrPheGly : 390 .!.||| ! !!:!!|||||||||||||||.!.! ! !!!||||||..! !|||..! GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsn 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAAC : 40116 391 : AspVal : 392 ! !||| AlaVal 40117 : GCTGTG : 40124 vulgar: CbirOr26 330 392 . KQ414804.1 39938 40124 + 101 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40124 101 + . gene_id 1 ; sequence CbirOr26 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39939 40124 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40124 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40124 101 + . alignment_id 1 ; Query CbirOr26 ; Align 39939 331 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 340 -> 401 Target range: 39974 -> 40235 341 : ValGlyTyrThrSerTyrLysIleGluTrpTyrGluLeuProGlyLysAlaAlaLeuAsp : 360 :!!||| ! :!!:!!||| ! !.!.||||||!!:|||||| !||| !|||:!!... IleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHisAlaValSer 39975 : ATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCATGCTGTTTCG : 40032 361 : LeuMetPheMetIleThrMetSerArgHisProValGlnIleThrAlaGlyLysLeuIle : 380 |||:!:.!!:!!||| ! :!!!:! !! !!||||||||||||||||||!!!! ! LeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGlyLysPheSer 40033 : TTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGT : 40092 381 : SerLeuSerPheThrAsnPheGlyAsn >>>> Target Intron 1 >>>> ValL : 391 !!!!!|||.!! ! |||..! ! 78 bp |||| ProPheSerLeuGluLeuPheAsnAla++ ++ValL 40093 : CCCTTTTCTCTCGAGCTGTTTAACGCTgt.........................agGTTT : 40203 392 : euLysThrSerValAlaTyrMetAsnLeuIle : 401 |||||||||||!.!!.!|||:!:::!:!!:!: euLysThrSerAlaGlyTyrLeuSerValLeu 40204 : TAAAAACGTCTGCTGGATATCTTTCCGTGTTG : 40235 vulgar: CbirOr32 340 401 . KQ414804.1 39974 40235 + 106 M 49 147 5 0 2 I 0 74 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39975 40235 106 + . gene_id 1 ; sequence CbirOr32 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39975 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39975 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40235 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40235 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39975 40235 106 + . alignment_id 1 ; Query CbirOr32 ; Align 39975 341 147 ; Align 40200 390 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 323 -> 394 Target range: 51777 -> 52050 324 : IleThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln >>>> : 342 :!:! !.!..!.:!!|||:!:!:!||||||:!:||||||! ||||||! :!! ValMetLeuGlnLeuPheLeuTyrCysTyrValGlyGluArgLeuSerValGlu++ 51778 : GTGATGCTACAATTATTCTTGTATTGTTACGTGGGTGAAAGGCTTTCCGTTGAGgt.... : 51834 343 : Target Intron 1 >>>> GlyGlyGlnIleGlyArgSerAlaTyrMetThrAsnT : 354 60 bp .!!! !:!!|||!.!!.!:!!|||||| :!!.!.| ++SerValGluIleAlaAsnAlaAlaTyrAspSerGluT 51835 : .....................agAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAAT : 51928 355 : rpTyrLeuLeuProGlyAsnThrAlaLeuGlyLeuThrMetIleIleLeuArgSerAsnV : 374 ||||| !||| !! !!!.!.!||| ! !||| !!!:|||!!:! !|||:!!!..: rpTyrAsnLeuSerProLysAsnAlaLysLeuLeuLeuIleIleMetArgArgAlaArgL 51929 : GGTACAATTTGTCTCCGAAAAATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGT : 51988 375 : alAlaLeuLysIleThrAlaGlyLysPheValGlnLeuSerPheValThrPheGlyGlyV : 394 !! !!|||:!!||||||||||||!:!|||!.! !!!!!!.!.:!! !!:!..! !| euProLeuGlnIleThrAlaGlyArgPheAlaThrPheThrLeuMetLeuTyrSerGlnV 51989 : TACCTCTACAAATCACTGCAGGTAGATTTGCTACTTTCACTCTGATGCTGTATTCACAGG : 52048 395 : al : 394 || al 52049 : Ta : 52050 vulgar: CbirOr28 323 394 . KQ414804.1 51777 52050 + 123 M 18 54 5 0 2 I 0 56 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51778 52050 123 + . gene_id 1 ; sequence CbirOr28 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51778 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51778 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52050 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52050 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51778 52050 123 + . alignment_id 1 ; Query CbirOr28 ; Align 51778 324 54 ; Align 51892 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 332 -> 394 Target range: 39938 -> 40124 333 : TyrIleGlyGluIleLeuSerGluGlnGlyGlyGlnIleGlyArgSerAlaTyrMetThr : 352 |||||| :::||| ::: ..! ! !||||||!:!||||||||| ! TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 353 : AsnTrpTyrLeuLeuProGlyAsnThrAlaLeuGlyLeuThrMetIleIleLeuArgSer : 372 ||||||||| !|||||| !!!. !|||:!!..!|||..!!!::!:|||! !|||:!! AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 373 : AsnValAlaLeuLysIleThrAlaGlyLysPheValGlnLeuSerPheValThrPheGly : 392 .!.|||:!!!!!:!!|||||||||||||||||| !! !!!|||.!!! ! !|||..! GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsn 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAAC : 40116 393 : GlyVal : 394 !.!||| AlaVal 40117 : GCTGTG : 40124 vulgar: CbirOr28 332 394 . KQ414804.1 39938 40124 + 117 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40124 117 + . gene_id 2 ; sequence CbirOr28 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39939 40124 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40124 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40124 117 + . alignment_id 2 ; Query CbirOr28 ; Align 39939 333 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 312 -> 394 Target range: 33843 -> 34543 313 : AsnIleValSerTyrCysMetLeuLeuThrSerIleThrPheAsnIlePheIlePheCys : 332 .!.:!::!!! !!:! :!!!!!:!! !! !||| ! ! :!!|||!:!|||!:!||| GlnLeuLeuPhePheValLeuPheValCysPheIleLeuValHisIleTyrIleTyrCys 33844 : CAATTGCTTTTCTTCGTGCTGTTCGTATGCTTCATCCTTGTACACATCTACATTTATTGT : 33901 333 : TyrIleGlyGluIleLeuSerGluGln >>>> Target Intron 1 >>>> GlyG : 343 ||||||||||||!!:||| ! !!!. 454 bp .!! TyrIleGlyGluMetLeuLeuThrHis+- ++SerA 33902 : TACATAGGAGAGATGCTACTCACACATgc.........................agAGCA : 34388 344 : lyGlnIleGlyArgSerAlaTyrMetThrAsnTrpTyrLeuLeuProGlyAsnThrAlaL : 363 !!:!!!!:.!!!.!||||||||| !:!!||||||||| !:!! !! ! !||| rgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProProGluAlaL 34389 : GAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCAGAAGCCA : 34448 364 : euGlyLeuThrMetIleIleLeuArgSerAsnValAlaLeuLysIleThrAlaGlyLysP : 383 ! !!||| !.!.|||!!:! !|||!!! ! ! !!||| :!:||||||||||||| ysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAlaGlyLysP 34449 : AGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCAGGAAAAT : 34508 384 : heValGlnLeuSerPheValThrPheGlyGlyVal : 394 || ! !!!|||.!.! !! !|||.!! !||| heSerThrPheSerMetGluMetPheSerThrVal 34509 : TCAGTACCTTCTCCATGGAAATGTTCAGTACTGTA : 34543 vulgar: CbirOr28 312 394 . KQ414804.1 33843 34543 + 101 M 29 87 5 0 2 I 0 450 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33844 34543 101 + . gene_id 3 ; sequence CbirOr28 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33844 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33844 33930 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 1 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34543 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34543 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33844 34543 101 + . alignment_id 3 ; Query CbirOr28 ; Align 33844 313 87 ; Align 34385 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 305 -> 397 Target range: 33810 -> 34543 306 : IleMetGluTrpGluAsnSerAspAlaValAlaIleLeuThrTyrPheIleLeuLeuIle : 325 |||:!:||| |||!!..!! ! !!.! !||| !!:!|||:!:|||!!!:!! IleLeuGluAsnGluLysGlyIlePheAsnValGlnLeuLeuPhePheValLeuPheVal 33811 : ATACTAGAAAACGAGAAAGGAATATTCAACGTGCAATTGCTTTTCTTCGTGCTGTTCGTA : 33868 326 : SerPhe<->MetPheAsnIleLeuIlePheCysTyrIleGlyGluLeuLeuMetGlnGln : 344 !!!||| :!: ! :!!|||! !|||!:!|||||||||||||||:!!|||:!: !!!. CysPheIleLeuValHisIleTyrIleTyrCysTyrIleGlyGluMetLeuLeuThrHis 33869 : TGCTTCATCCTTGTACACATCTACATTTATTGTTACATAGGAGAGATGCTACTCACACAT : 33928 345 : >>>> Target Intron 1 >>>> TyrSerThrValAlaSerAlaValTyrGlyI : 355 454 bp !!!! !:!!::!!:!:!!!.!|||! ! +- ++SerArgGluMetSerAsnSerAlaTyrGluS 33929 : gc.........................agAGCAGAGAAATGAGCAATTCCGCTTACGAGT : 34415 356 : leAsnTrpTyrAspLeuSerGlyLysLysAlaLeuAspLeuLysLeuIleIleAlaMetS : 375 !|||||||||:!!:!!||| ! !:!!||| ! !||| !!!!|||!!: !! ! erAsnTrpTyrAsnValSerProProGluAlaLysCysLeuLeuPheIleMetHisArgT 34416 : CAAACTGGTACAACGTCTCACCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAA : 34475 376 : erArgTyrProValLysLeuThrAlaGlyLysPheValAspLeuSerLeuAsnThrPheG : 395 !! ! !|||:!! |||||||||||||||||| ! !!!!|||:!!.!.! !|||. hrAlaArgProLeuCysLeuThrAlaGlyLysPheSerThrPheSerMetGluMetPheS 34476 : CCGCTCGTCCACTTTGCTTGACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCA : 34535 396 : lyAlaVal : 397 !!.!!||| erThrVal 34536 : GTACTGTA : 34543 vulgar: CbirOr30 305 397 . KQ414804.1 33810 34543 + 117 M 22 66 G 0 3 M 17 51 5 0 2 I 0 450 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33811 34543 117 + . gene_id 1 ; sequence CbirOr30 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33811 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33811 33930 . + . insertions 3 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 1 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34543 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34543 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33811 34543 117 + . alignment_id 1 ; Query CbirOr30 ; Align 33811 306 66 ; Align 33880 328 51 ; Align 34385 345 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 347 -> 399 Target range: 39974 -> 40130 348 : ValAlaSerAlaValTyrGlyIleAsnTrpTyrAspLeuSerGlyLysLysAlaLeuAsp : 367 :!!!.!..!:!!!.!|||! ! !||||||||||||||| !! !||| ! |||:!!... IleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHisAlaValSer 39975 : ATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCATGCTGTTTCG : 40032 368 : LeuLysLeuIleIleAlaMetSerArgTyrProValLysLeuThrAlaGlyLysPheVal : 387 ||| :!!:!:|||..! :!!!:! !! !!:!!:!!||||||||||||||| ! LeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGlyLysPheSer 40033 : TTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGT : 40092 388 : AspLeuSerLeuAsnThrPheGlyAlaValLeuArg : 399 !!!!||||||.!. !|||..!|||||| !||| ProPheSerLeuGluLeuPheAsnAlaValSerArg 40093 : CCCTTTTCTCTCGAGCTGTTTAACGCTGTGAGTCGA : 40130 vulgar: CbirOr30 347 399 . KQ414804.1 39974 40130 + 108 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39975 40130 108 + . gene_id 2 ; sequence CbirOr30 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39975 40130 . + . KQ414804.1 exonerate:protein2genome:local exon 39975 40130 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39975 40130 108 + . alignment_id 2 ; Query CbirOr30 ; Align 39975 348 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1083 Query range: 12 -> 406 Target range: 303169 -> 305937 13 : AsnValSerTyrGlnGluAspMetArgTyrIlePheLysProSerSerTrpIleLeuG : 32 |||:!!!:!|||:!!:!!|||!!: !|||:!! |||! !|||!.!||||||||| AsnLeuAsnTyrLysLysAspIleValTyrValThrLysHisSerLysTrpIleLeuL 303170 : AATTTGAATTACAAGAAAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCCTGA : 303227 33 : lySerIleGlyIleTrpProLeuThrIleCysGlyAlaGlyHisHisValSerLysIl : 51 !|||:!!|||||||||||| !..!:!: !! !.!!!.! !:!! !!||||| ysSerLeuGlyIleTrpProAlaValLeuAspGluThrAlaGlyPheLeuProLysIl 303228 : AGTCCCTTGGTATTTGGCCAGCCGTGTTGGACGAAACCGCAGGATTCCTACCAAAAAT : 303284 52 : eAlaIleValIleCysAsnPheAlaLeuSerPheAlaIleValProCysIleLeuHis : 70 |.!!|||! !:!! !!|||!!.!.!|||! !|||.!!:!::!!||||||||||||||| eThrIleGlyLeuSerAsnLeuValLeuLeuPheThrValIleProCysIleLeuHis 303285 : CACCATTGGACTCAGTAATTTGGTTCTATTATTCACCGTGATACCGTGTATTCTACAC : 303341 71 : IleIleTyrAspGluLysAsnLeuAsnIleArgLeuLysLeuSerGlyLeuLeuGlyP : 90 ||||||!:!!!::!!|||:!! !! |||||||||||||||! !|||||||||.!!| IleIlePheGluGlnLysAspThrIleIleArgLeuLysLeuPheGlyLeuLeuSerP 303342 : ATAATATTCGAACAAAAGGATACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTT : 303401 91 : heCysIleThrAlaMetMetLysTyrCysValLeuThrIleArgArgProAspIleGl : 109 |||||:!:! !:!!:!!|||||||||!! !.!|||.!!! |||!:!||| |||:! heCysLeuIleSerLeuMetLysTyrTrpAlaLeuAlaThrArgLysProArgIleLy 303402 : TCTGTTTGATCTCGTTGATGAAGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAA : 303458 110 : nArgCysIleGluHisValLysSerAspTrpTrpGln >>>> Target Intron : 122 !..!|||||||||.!.|||:!!||||||||| :!! 938 bp sGluCysIleGluGluValGlnSerAspTrpLysGlu++ 303459 : AGAATGTATAGAAGAGGTGCAAAGTGATTGGAAAGAGgt................... : 303499 123 : 1 >>>> ValLysPheSerSerAspArgGluLeuMetLeuLysTyrAlaGlyThrSe : 138 |||:!!! ! !!!!|||||||||:!!||||||||||||!.! !! !.! ++ValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetGl 303500 : ......agGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGGG : 304483 139 : rArgArgLeuSerThrIleSerValSerSerMetTyrIleAlaGlyPheIleTyrHis : 157 !|||!.!|||!!!! !|||!!!!.!! !! !||||||! !!.!||| !||||||||| yArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHis 304484 : TCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCAC : 304540 158 : LeuIleLeuProPheCysAsnValHisLysIleAsp<-><->AsnGlnThrIleArgP : 175 !:!!:!!! !|||...!.!! ! ! :!:||| |||!::||||||!:!| ThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgThrIleLysP 304541 : ACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAAC : 304600 176 : roLeuValTyrProThrTyrSerGluPheHisGlnSerGlnIleSerProIleTyrGl : 194 |||||||||||||||||||||||! !!. !.!. !|||! !|||||||||||||| roLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIleTyrGl 304601 : CGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGA : 304657 195 : uLeuValTyrLeuAlaHisCysMetCysGlyTyrThrMetTyrThrValThrAlaGly : 213 ||||||||||!!!!.!||||||||||||||||||..!!!:|||:!!:!!||||||||| uLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThrAlaGly 304658 : ATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGT : 304714 214 : SerCysGlyLeuAlaAlaIlePheValThrHisAlaCysGlyGlnIleGluValLeuA : 233 :!!|||||||||||||||:!!|||!.!|||||||||||||||||||||!!::!!:!! AlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValM 304715 : GCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTA : 304774 234 : laSerArgLeuGluAspLeuSerHisGlyGlnAsnPheGlyProSerLeuAspValAs : 252 !|||||||||! |||||| !:!!.!!:!!.!. |||! !|||:!!:! etSerArgLeuGlyAspLeuValAsnSerLysGlu---------SerSerAspLeuAs 304775 : TGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAA---------TCATCTGATTTAGA : 304822 253 : nGlnArgIleAlaAlaIleValGluSerHisValArgIleLeu{Ar} >>>> Targ : 267 !:!!|||:!! !! !||||||||| !|||:!!|||||||||{||} pLysArgLeuIleGluIleValGluHisHisLeuArgIleLeu{Ar}++ 304823 : TAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTA{AG}gt......... : 304871 268 : et Intron 2 >>>> {g}PheSerAlaAlaValArgGluLeuLeuGlnGluLeuC : 280 70 bp {|}||||||||| !|||!:! !:!!|||||||||:!!| ++{g}PheSerAlaIleValGlnThrValLeuGlnGluValC 304872 : ................ag{A}TTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTAT : 304976 281 : ysLeuLeuGluPheAlaSerSerValPheThrMetCysLeuProGluTyrTyrCysIl : 299 ||!!!||||||||| !.!!|||..!!!. !!!:||||||! !|||||||||||||| ysPheLeuGluPheIleGlySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysIl 304977 : GCTTCTTGGAATTCATTGGTTCTACCTTACTGATATGTCTACTTGAATACTACTGTAT : 305033 300 : eVal >>>> Target Intron 3 >>>> AspTrpGlnAspSerAspThrValG : 309 |..! 62 bp ||||||:!!..!|||:!!||||||. eThr++ ++AspTrpGluSerSerAsnThrValS 305034 : AACGgt.........................agGATTGGGAGAGCAGTAATACCGTTA : 305125 310 : lyLeuThrThrTyrPheLeuLeuPheValSerPheCysPheAsnMetTyrIleLeuCy : 328 !!|||||||||||| :!!|||.!.:!!||| ! ||||||!!:!:!|||||||| erLeuThrThrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCy 305126 : GTCTTACAACATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATG : 305182 329 : sTyrIleGlyGluLeuIleValGluLys >>>> Target Intron 4 >>>> S : 338 |||||||||||||:!!:!!:!!|||||| 413 bp | sTyrIleGlyGluIleLeuMetGluLys++ ++S 305183 : CTACATTGGTGAGATTCTTATGGAAAAGgt.........................agA : 305625 339 : erSerGlnIleGlyLeuMetCysPheMetIleAspTrpTyrGlnLeuProAlaLysSe : 357 |||||...:!!|||||| ||||||||||||..!||||||!!.||||||.!!|||!! erSerSerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysTh 305626 : GCAGTAGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGAC : 305682 358 : rValArgSerLeuValLeuMetIleAlaMetSerSerGlnProIleLysIleSerAla : 376 !:!!!.!.!!|||:!!|||!!:|||||||||||||||.!.||| !|||||||||||| rIleHisGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAla 305683 : GATACATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCT : 305739 377 : GlyArgMetIleAspIleSerLeuAlaThrPheGlyAsn >>>> Target Intro : 390 |||!:!:!::!!|||:!!||||||:!!|||||||||||| 106 bp GlyLysValValAspLeuSerLeuSerThrPheGlyAsn++ 305740 : GGTAAAGTAGTTGATTTATCTTTATCCACATTTGGAAACgt................. : 305783 391 : n 5 >>>> ValLeuLysThrSerLeuAlaTyrLeuSerPheLeuArgThrLeuIle : 405 |||||||||||||||||||||||||||||||||||||||||| !:!! ++ValLeuLysThrSerLeuAlaTyrLeuSerPheLeuArgThrThrVal 305784 : ........agGTTCTGAAAACGTCATTAGCGTATTTAAGTTTCCTTCGGACTACCGTT : 305932 406 : Met : 406 !!: Ile 305933 : ATA : 305937 vulgar: CbirOr35 12 406 . KQ414889.1 303169 305937 + 1083 M 109 327 5 0 2 I 0 934 3 0 2 M 48 144 G 0 6 M 75 225 G 3 0 M 19 57 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 37 111 5 0 2 I 0 409 3 0 2 M 52 156 5 0 2 I 0 102 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303170 305937 1083 + . gene_id 1 ; sequence CbirOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303170 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303170 303496 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304868 . + . insertions 6 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 2 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305780 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305780 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305781 305782 . + . intron_id 5 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305781 305886 . + . intron_id 5 KQ414889.1 exonerate:protein2genome:local splice3 305885 305886 . + . intron_id 4 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305887 305937 . + . KQ414889.1 exonerate:protein2genome:local exon 305887 305937 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303170 305937 1083 + . alignment_id 1 ; Query CbirOr35 ; Align 303170 13 327 ; Align 304435 122 144 ; Align 304585 170 225 ; Align 304810 248 57 ; Align 304940 268 99 ; Align 305101 301 111 ; Align 305625 338 156 ; Align 305887 390 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 443 Query range: 17 -> 390 Target range: 232447 -> 235147 18 : GluAspMetArgTyrIlePheLysProSerSerTrpIleLeuGlySerIleGlyIleT : 37 ..!||| ..!|||! !.!!:!! !!:! !!|||.!!||| ! !!!!:||| !| ArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaT 232448 : CGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCAT : 232505 38 : rpPro<-><->LeuThrIleCysGlyAlaGlyHisHisValSerLysIleAlaIleVa : 54 ||||| ! !! !! !!||| !!!.! :!!:!!|||:!: !! !:! rpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLe 232506 : GGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACT : 232562 55 : lIleCysAsnPheAlaLeuSerPheAlaIleValProCysIleLeuHisIleIleTyr : 73 !! !|||:!!! ! !:!!! !! !:!!|||||||||||||||||| !|||:!:!:! uThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPhe 232563 : CACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTC : 232619 74 : AspGluLysAsnLeuAsnIleArgLeuLysLeuSerGlyLeuLeuGlyPheCysIleT : 93 !!:!!:! !!:!|||.!. !|||:!!|||! !! !|||! !:!!.!! !! !:!:! GluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuM 232620 : GAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGA : 232679 94 : hrAlaMetMetLysTyrCysValLeuThrIleArgArgProAspIleGlnArgCysIl : 112 !!.! :!!!!.|||||| !||| ! !!:! ! !||||||! !|||:! etGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysVa 232680 : TGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGT : 232736 113 : eGluHisValLysSerAspTrpTrpGlnValLysPheSerSerAspArgGluLeuMet : 131 :|||!!.||||||..!|||||| ! .!.|||||| !! ! !!|||!!:|||||| lGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMet 232737 : GGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATG : 232793 132 : LeuLysTyrAlaGlyThrSerArgArgLeuSerThrIleSerValSerSerMetTyrI : 151 |||||| !!||| ! !.!!||| !:!!:!! !|||:!!!.!! !!!!|||:!!! LeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisT 232794 : TTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACA : 232853 152 : leAlaGlyPheIleTyrHisLeuIleLeuProPhe<->CysAsnValHisLysIleAs : 169 !!.!! ! ! ! !!.!.:!!:!! ! !.!! !:!..! ! ! :!:! hrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGl 232854 : CCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGG : 232910 170 : pAsnGln<-><->ThrIleArgProLeuValTyrProThrTyrSerGluPheHisGln : 186 |||:!! :!!!!: !|||||| !! ! !! !|||!!!:!!.!. .!. yAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAsp 232911 : GAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGAC : 232967 187 : SerGlnIleSerProIleTyrGluLeuValTyrLeuAlaHisCysMetCysGlyTyrT : 206 !!!::!.!!||||||! !!|||:!!:!!!:!:!! !!!.|||:!:! !|||!:!! ThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheI 232968 : ACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCA : 233027 207 : hrMetTyrThrValThrAlaGlySerCysGlyLeuAlaAlaIlePheValThrHisAl : 225 !:!! !!:!!||||||!.!|||:!!|||||||||!.!|||:!!.!.!.!! !||||| leValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAl 233028 : TCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGC : 233084 226 : aCysGlyGlnIleGluValLeuAlaSerArgLeuGluAspLeuSerHisGlyGlnAsn : 244 ||||||||||:!:.!.|||:!! !|||!:!|||!!:|||||| ! !!!.!:!!... aCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGly 233085 : GTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGG : 233141 245 : PheGlyProSerLeuAspValAsnGlnArgIleAlaAlaIleValGluSerHisValA : 264 ! ! !!!!:!! !.!.!.::!!:!:!!!.! !||||||||| !|||:!!| GlnGluGluArgVal---AlaGlnArgLysLeuGlyPheIleValGluHisHisLeuA 233142 : CAGGAGGAGAGAGTC---GCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGC : 233198 265 : rgIleLeu{Ar} >>>> Target Intron 1 >>>> {g}PheSerAlaAlaVa : 272 ||! !|||{||} 1489 bp {|}!!.||| !||||| rgThrLeu{Ar}++ --{g}LeuSerLeuAlaVa 233199 : GTACATTA{AG}gt.........................tt{A}TTAAGTCTTGCAGT : 234711 273 : lArgGluLeuLeuGlnGluLeuCysLeuLeuGluPheAlaSerSerValPheThrMet : 291 |!.! !:!!.!.|||! ! !! !! !!!: :::...:::||| lAsnIleAsnValAsnGluGlnSerThrTrpAspArgTyrThrGluIlePheIleGlu 234712 : TAATATCAATGTTAACGAACAAAGTACATGGGATCGGtacactgaaattttcatcgaa : 234768 292 : CysLeuProGluTyrTyrCys<-><->IleValAspTrpGlnAspSerAspThrValG : 309 ! !.!.! !! ||| |||:!! !! |||!!:!..... PheSerArgAsnSerLeuCysLysCysIleLeuThrSerGlnGluLysSerLysGluL 234769 : ttttcgCGTAACTCTTTATGCAAATGTATTTTAACTTCTCAGGAAAAgtcgaaggaaa : 234828 310 : lyLeuThrThrTyrPheLeuLeuPheValSerPheCysPheAsnMetTyrIleLeuCy : 328 |||.!!:!!||| !!:!!:!!!:!||||||.!. ||||||::::::|||...|| ysLeuAlaSerTyrValIleValTyrValSerMetThrPheAsnIlePheIlePheCy 234829 : aattagCTTCATACGTCATCGTGTACGTGTCCATGACATTtaatatattcatattttg : 234885 329 : sTyrIleGlyGluLeuIleValGluLys >>>> Target Intron 2 >>>> S : 338 ||||||||||||| !:!!..!|||:!! 74 bp ! sTyrIleGlyGluThrLeuThrGluGln++ ++C 234886 : ttACATCGGAGAGACGCTTACAGAGCAGgt.........................agT : 234989 339 : erSerGlnIleGlyLeuMetCysPheMetIleAspTrpTyrGlnLeuProAlaLysSe : 357 !!!!!:!!:!!||| !! !:!|||! !!!:||||||!:!|||||| !|||!! ysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProHisLysTh 234990 : GTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATAAAAC : 235046 358 : rValArgSerLeuValLeuMetIleAlaMetSerSerGlnProIleLysIleSerAla : 376 !!.!! !.!!||||||:!!!!:|||:!!! !||||||..! !|||||||||!!!||| rAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAla 235047 : TGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCACCGCT : 235103 377 : GlyArgMetIleAspIleSerLeuAlaThrPheGlyAsnVal : 390 |||!:!.!.:!!.!.!!:|||:!!||||||||||||:!!||| GlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235104 : GGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: CbirOr35 17 390 . KQ414889.1 232447 235147 + 443 M 21 63 G 0 6 M 124 372 G 0 3 M 9 27 G 0 6 M 78 234 G 1 0 M 16 48 S 0 2 5 0 2 I 0 1485 3 0 2 S 1 1 M 31 93 G 0 6 M 39 117 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232448 235147 443 + . gene_id 2 ; sequence CbirOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232448 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232448 233208 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234697 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234696 234697 . + . intron_id 0 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local cds 234698 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234698 234914 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232448 235147 443 + . alignment_id 2 ; Query CbirOr35 ; Align 232448 18 63 ; Align 232517 39 372 ; Align 232892 163 27 ; Align 232925 172 234 ; Align 233159 251 48 ; Align 234699 268 93 ; Align 234798 299 117 ; Align 234989 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 420 Query range: 12 -> 267 Target range: 289708 -> 290482 13 : AsnValSerTyrGlnGluAspMetArgTyrIlePheLysProSerSerTrpIleLeuG : 32 |||! ! !!|||:!! !|||!!:||||||! |||:!! !!!! !||||||||| AsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleLeuL 289709 : AACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCTTGA : 289766 33 : lySerIleGlyIleTrpProLeuThrIleCysGlyAlaGlyHisHis<-><-><->Va : 48 ! !!||||||!!:!::|||!!!..!.!! !! !!|||.!!...!.! !. ysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgThrAl 289767 : AACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGC : 289823 49 : lSerLysIleAlaIleValIleCysAsnPheAlaLeuSerPheAlaIleValProCys : 67 !||| !:!: !|||:!!:!!||| !! !|||..!||| !|||||||||! ! aSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValProPhe 289824 : GTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCGTTC : 289880 68 : IleLeuHisIleIleTyrAspGluLysAsnLeuAsnIleArgLeuLysLeuSerGlyL : 87 ! !! !|||:!!:!!!:!..!!!:!!.:!!:!!|||! !:!!||| ! !|||! SerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuGlyP 289881 : AGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCGGAC : 289940 88 : euLeuGlyPheCysIleThrAlaMetMetLysTyrCysValLeuThrIleArgArgPr : 106 !||| !||||||:!:|||.!!.!..!.||||||||| !!!!!:!!!:!:! !! ! roLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGlySe 289941 : CGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGGTTC : 289997 107 : oAspIleGlnArgCysIleGluHisValLysSerAspTrpTrpGlnValLysPheSer : 125 !! ||| ||||||:!::!!|||:!!:!!!!!|||||| !..!:!!::: !..! rAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAspGlu 289998 : AGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGACGAG : 290054 126 : SerAspArgGluLeuMetLeuLysTyrAlaGlyThrSerArgArgLeuSerThrIleS : 145 ..! !!|||! :!!||||||!:!|||!.! !! !||||||!.!|||! !! !:!:! AspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysLeuC 290055 : GATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAACTGT : 290114 146 : erValSerSerMetTyrIleAlaGlyPheIleTyrHisLeuIleLeuProPheCysAs : 164 !!!.!! !! !:!!||||||!.!|||.!. !|||:!! !:!!:!!|||!!.! !:: ysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPheSe 290115 : GCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTTCTC : 290171 165 : nValHisLysIleAsp<->AsnGlnThrIleArgProLeuValTyrProThrTyrSer : 182 : ! ! !..:!::!! ||| !|||||||||||||||..!|||||| !|||..! rLysLysSerValAsnGlyAsnValThrIleArgProLeuThrTyrProGlyTyrGlu 290172 : GAAGAAGAGCGTGAACGGTAACGTGACTATCAGACCTCTAACTTATCCCGGTTACGAG : 290228 183 : GluPheHisGlnSerGlnIleSerProIleTyrGluLeuValTyrLeuAlaHisCysM : 202 |||||| !.!. !|||! |||||| ||||||:!!|||!:!! ! !||||||: GluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetHisCysV 290229 : GAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTG : 290288 203 : etCysGlyTyrThrMetTyrThrValThrAlaGlySerCysGlyLeuAlaAlaIlePh : 221 !:! !! ! ! !! ! !.!:!!||| !!.!:!!! !.!!|||.!!.!!||||| alTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePh 290289 : TCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGATCTT : 290345 222 : eValThrHisAlaCysGlyGlnIleGluValLeuAlaSerArgLeuGluAspLeuSer : 240 |!.!||||||.!!||||||||||||:!!:!!! !.!!!!!|||||||||||||||!!! eAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAspLeuThr 290346 : CGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTGACA : 290402 241 : HisGlyGlnAsnPheGlyProSerLeuAspValAsnGlnArgIleAlaAlaIleValG : 260 ! ::!....!. ! !..! !! |||!:!.!.|||:!:|||!.!:!!|||. Lys---ArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValValValS 290403 : AAG---AGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTGTGA : 290459 261 : luSerHisValArgIleLeuArg : 267 ...!!||||||..!||||||!:! erGlyHisValGluIleLeuLys 290460 : GCGGTCACGTGGAGATCTTGAAG : 290482 vulgar: CbirOr35 12 267 . KQ414889.1 289708 290482 + 420 M 35 105 G 0 9 M 122 366 G 0 3 M 72 216 G 1 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289709 290482 420 + . gene_id 3 ; sequence CbirOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289709 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289709 290482 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 289709 290482 420 + . alignment_id 3 ; Query CbirOr35 ; Align 289709 13 105 ; Align 289823 48 366 ; Align 290192 170 216 ; Align 290408 243 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 385 Query range: 164 -> 337 Target range: 300174 -> 301797 165 : ValHisLysIleAspAsnGlnThrIleArgProLeuValTyrProThrTyrSerGluP : 184 ..!:!!|||! !!:||| ! ||| !!:!||||||!.!|||||| !|||..! !| ThrTyrLysArgGluAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpP 300175 : ACTTACAAAAGGGAGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGT : 300232 185 : heHisGlnSerGlnIleSerProIleTyrGluLeuValTyrLeuAlaHisCysMetCy : 203 || !.!.!!!|||! !||||||! !||||||:::|||:::... ||||||.!... heIleAspThrGlnThrSerProThrTyrGluIleValPhePhePheHisCysPheAl 300233 : TTATCGATACACAAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGC : 300289 204 : sGlyTyrThrMetTyrThrValThrAlaGlySerCysGlyLeuAlaAlaIlePheVal : 222 .!.! ! !||||||!.!||||||.!!!.!:!!! !.!!|||||||||||||||||| aAlaMetIleMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheVal 300290 : AGCGATGATCATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTC : 300346 223 : ThrHisAlaCysGlyGlnIleGluValLeuAlaSerArgLeuGluAspLeuSerHisG : 242 |||||| !||||||||||||:!!:!!! ! !:!!||||||||||||||| ! ThrHisIleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuVal---- 300347 : ACTCATATCTGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTG---- : 300403 243 : lyGlnAsnPheGlyProSerLeuAspValAsnGlnArgIleAlaAlaIleValGluSe : 261 :!!!.. ||| !!.! !|||! ! !.!.! !:!:!.!!.!||||||..!.. --GluArgThrGlyGluLysAspAspGlyProAspProLeuValValIleValArgAs 300404 : --GAGAGGACGGGAGAGAAGGACGACGGTCCTGATCCTTTGGTCGTTATCGTTCGAGA : 300457 262 : rHisValArgIleLeu{Ar} >>>> Target Intron 1 >>>> {g}PheSer : 269 !||||||!:!:!!|||{||} 140 bp {|}|||:!! pHisValLysValLeu{Ar}++ ++{g}PheAla 300458 : TCACGTGAAGGTTTTA{AG}gt.........................ag{A}TTTGCA : 300621 270 : AlaAlaValArgGluLeuLeuGlnGluLeuCysLeuLeuGluPheAlaSerSerValP : 289 ! !|||..!||| !|||!::!!:!!!||||||:!!|||.!! !..!|||..!. LysAsnValGluGluThrLeuArgAspPheCysLeuValGluIlePheGluSerThrL 300622 : AAGAACGTTGAGGAAACTTTGCGTGACTTCTGCTTAGTGGAAATCTTCGAGTCCACGC : 300681 290 : heThrMetCysLeuProGluTyrTyrCysIleVal >>>> Target Intron 2 : 301 !.! !:!!||||||! !||||||||||||:!:||| 970 bp euIleLeuCysLeuLeuGluTyrTyrCysLeuVal++ 300682 : TGATTTTGTGTTTGCTCGAATACTACTGTTTGGTGgt..................... : 300719 302 : >>>> AspTrpGlnAspSerAspThrValGlyLeuThrThrTyrPheLeuLeuPheV : 318 !!:||||||:!!|||||||||:!!!.!:!! !|||!:!||| !|||!!.. ++GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuT 300720 : ....agGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAA : 301738 319 : alSerPheCysPheAsnMetTyrIleLeuCysTyrIleGlyGluLeuIleValGluLy : 337 .!|||||| !||||||!!:!:!|||!!!|||||||||||||||:!!:!! !|||:! hrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGl 301739 : CGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACA : 301795 338 : s : 337 ! n 301796 : G : 301797 vulgar: CbirOr35 164 337 . KQ414889.1 300174 301797 + 385 M 76 228 G 2 0 M 24 72 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 33 99 5 0 2 I 0 966 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300175 301797 385 + . gene_id 4 ; sequence CbirOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300175 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300175 300476 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 300616 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300615 300616 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300617 300716 . + . KQ414889.1 exonerate:protein2genome:local exon 300617 300716 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300717 300718 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300717 301686 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301685 301686 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300175 301797 385 + . alignment_id 4 ; Query CbirOr35 ; Align 300175 165 228 ; Align 300403 243 72 ; Align 300618 268 99 ; Align 301687 301 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 369 Query range: 14 -> 268 Target range: 221357 -> 222131 15 : SerTyrGlnGluAspMetArgTyrIlePheLysProSerSerTrpIleLeuGlySerI : 34 ..!|||:!! !:!!:!!!:!! ! ! ! :!! !||| !!||||||||| ! !!| AspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProI 221358 : GATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGA : 221415 35 : leGlyIleTrpPro<-><->LeuThrIleCysGlyAlaGlyHisHisValSerLysIl : 51 |||||:!!|||||| !!.!|||! ! !!.!! !...:!!:!!! ! !:! leGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLe 221416 : TCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 52 : eAlaIleValIleCysAsnPheAlaLeuSerPheAlaIleValProCysIleLeuHis : 70 : !! !|||:!!||| !! ! !:!!!!!||| !:!:|||||||||! !|||:!! uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 71 : IleIleTyrAspGluLysAsnLeuAsnIleArgLeuLysLeuSerGlyLeuLeuGlyP : 90 :!:||| !!!:! !:!!:!!:!! !!! !|||:!!||||||! !|||! !|||.!!| ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 91 : heCysIleThrAlaMetMetLysTyrCysValLeuThrIleArgArgProAspIleGl : 109 |||||:!:! !|||.!.:!:|||||| !:!!|||! !:!! !..! !||||||!: heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 110 : nArgCysIleGluHisValLysSerAspTrpTrpGlnValLysPheSerSerAspArg : 128 :..!|||||||||!.!:!!:!!!!!|||||| !.!.:!!! !:!|||!.!|||!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 129 : GluLeuMetLeuLysTyrAlaGlyThrSerArgArgLeuSerThrIleSerValSerS : 148 !!::!!|||:!!:!! !!||| ! !.!!|||||||||! !! !|||!!!..!! !! AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 149 : erMetTyrIleAlaGlyPheIleTyrHisLeuIleLeuProPheCys<-><->AsnVa : 165 !||||||! !... ...|||:::::! !:!!|||||| !! !!.:! heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 166 : lHisLysIleAsp<->AsnGlnThrIleArgProLeuValTyrProThrTyrSerGlu : 183 !! ! ! ||| ||| |||... |||:!!|||!:!||| !! !!! eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 184 : PheHisGlnSerGlnIleSerProIleTyrGluLeuValTyrLeuAlaHisCysMetC : 203 .!! !.!.!!!!:! !||||||:!! !!|||:!!:!!!:!! ! !!!. !|||. IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 204 : ysGlyTyrThrMetTyrThrValThrAlaGlySerCysGlyLeuAlaAlaIlePheVa : 222 ..||| ! !|||:!!!:!:!!|||:!!!.!:!!|||.!!|||!.!|||!!:|||!. laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 223 : lThrHisAlaCysGlyGlnIleGluValLeuAlaSerArgLeuGluAspLeuSerHis : 241 !..!|||||||||||||||!!::!!|||||| !||| !!|||:!! !!|||! !:!! aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 242 : GlyGlnAsnPheGlyProSerLeuAspValAsnGlnArgIleAlaAlaIleValGluS : 261 |||!:! ! ! !!!! !:!!|||:!!::!||||||||| !||||||.!.. GlyArg---AlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnG 222052 : GGCCGG---GCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATC : 222108 262 : erHisValArgIleLeuArgPhe : 268 .!|||||||||||||||!:!!:! lnHisValArgIleLeuGlnTyr 222109 : AACACGTTCGAATATTGCAGTAT : 222131 vulgar: CbirOr35 14 268 . KQ414889.1 221357 222131 + 369 M 24 72 G 0 6 M 125 375 G 0 6 M 6 18 G 0 3 M 74 222 G 1 0 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221358 222131 369 + . gene_id 5 ; sequence CbirOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221358 222131 . + . KQ414889.1 exonerate:protein2genome:local exon 221358 222131 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221358 222131 369 + . alignment_id 5 ; Query CbirOr35 ; Align 221358 15 72 ; Align 221436 39 375 ; Align 221817 164 18 ; Align 221838 170 222 ; Align 222060 245 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 361 Query range: 10 -> 266 Target range: 284490 -> 286288 11 : SerProAsnValSerTyrGlnGluAspMetArgTyrIlePheLysProSerSerTrpI : 30 ||| !!:!! !!!!!::.!. !||| !! !|||! ! ! :!! !!:! !!|||. SerThrAspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpP 284491 : TCAACCGATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGT : 284548 31 : leLeuGlySerIleGlyIleTrpProLeuThrIleCysGlyAlaGly<->HisHisVa : 48 !!||| ! !!||||||:!!|||||||||!:!:!!|||! !.!! ! .!. ! :! heLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIl 284549 : TTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGAT : 284605 49 : lSerLysIleAlaIleValIleCysAsn<->PheAlaLeuSerPheAlaIleValPro : 66 !|||...:!:!.!:!!!.!:!! !!:! ||| !:!!.!!||| !:!:|||||| eSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValPro 284606 : CAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCG : 284662 67 : CysIleLeuHisIleIleTyrAspGluLys<->AsnLeuAsnIleArgLeuLysLeuS : 85 ||| !||| !! !:!: !|||:!!! :!!|||:!!! !:!:!!|||:!!! CysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetI 284663 : TGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGA : 284722 86 : erGlyLeuLeuGlyPheCysIleThrAlaMetMetLysTyrCysValLeuThrIleAr : 104 !|||! !|||.!!||||||!!:! !||| !!!:||||||! !:!!|||! ! || leGlyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerAr 284723 : TCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCG : 284779 105 : gArgProAspIleGlnArgCysIleGluHisValLysSerAsp{Tr} >>>> Targ : 119 | !! ! ! ||| !:!|||:!::!! !!:!!::::!!|||{||} gGlyGlyLysIleGlyGlnCysValLysAspIleArgAlaAsp{Tr}++ 284780 : CGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGAC{TG}gt......... : 284828 120 : et Intron 1 >>>> {p}TrpGlnValLysPheSerSerAspArgGluLeuMetL : 132 1012 bp {|} ..! !!.. ......:::||||||:::||| +-{p}LeuSerHisSerGlnGluGluGluArgGluIleMetA 284829 : ................ac{G}CTTTCGCATAGtcaagaagaggagagagagatcaTGA : 285875 133 : euLysTyrAlaGlyThrSerArgArgLeuSerThrIleSerValSerSerMetTyrIl : 151 ! ! !||| !!! !.!!||| !|||:!!! !.!!!!!!.!.!!! !|||||| rgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSe 285876 : GGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTC : 285932 152 : eAlaGlyPheIleTyrHisLeuIleLeuProPheCysAsnValHisLys<-><->Ile : 168 !!.!||||||.!!||| ! !:!::!!|||!!.|||!..|||!.!! ! ||| rGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIle 285933 : CGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCATC : 285989 169 : AspAsnGlnThrIleArgProLeuValTyrProThrTyrSerGluPheHisGlnSerG : 188 ||||||:!!|||:!:||| !!! !!.!!:!|||! !||| !!! .!!! !.!. !!! AspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProA 285990 : GACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGC : 286049 189 : lnIleSerProIleTyrGluLeuValTyrLeuAlaHisCysMetCysGlyTyrThrMe : 207 ::! !|||||| !:!|||:!!||| ! !!! !!!.|||:!!..!!.!!:!..!!! rgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIl 286050 : GTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTAT : 286106 208 : tTyrThrValThrAlaGlySerCysGlyLeuAlaAlaIlePheValThrHisAlaCys : 226 :|||:!!||||||!.!|||:!!|||.!!|||||||||:!:||||||! !|||!.!||| eTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCys 286107 : ATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGT : 286163 227 : GlyGlnIleGluValLeuAlaSerArgLeuGluAspLeuSerHisGlyGlnAsnPheG : 246 ||||||.!!..!:!!|||!.!!!!!:!|||!!: ! ||| ! !!||| !!!. GlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLysGlyA 286164 : GGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGA : 286223 247 : lyProSerLeuAspValAsn<->GlnArgIleAlaAlaIleValGluSerHisValAr : 264 !! !.!!|||..!..!:!! ||||||:!:!.!! !|||:!!||| !|||:!!!: rgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLy 286224 : GGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAA : 286280 265 : gIleLeu : 266 !|||||| sIleLeu 286281 : GATACTG : 286288 vulgar: CbirOr35 10 266 . KQ414889.1 284490 286288 + 361 M 35 105 G 0 3 M 12 36 G 0 3 M 19 57 G 0 3 M 42 126 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 48 144 G 0 6 M 85 255 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284491 286288 361 + . gene_id 6 ; sequence CbirOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284491 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284491 284825 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286288 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286288 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284491 286288 361 + . alignment_id 6 ; Query CbirOr35 ; Align 284491 11 105 ; Align 284599 46 36 ; Align 284638 58 57 ; Align 284698 77 126 ; Align 285839 120 144 ; Align 285989 168 255 ; Align 286247 253 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 349 Query range: 12 -> 267 Target range: 208185 -> 208962 13 : AsnValSerTyrGlnGluAspMetArgTyrIlePheLysProSerSerTrpIleLeuG : 32 ||| !!:!|||:!!.!.|||:!!!!!!:!! ! !!:::! !!:! !|||! ||| AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 33 : lySerIleGlyIleTrpProLeuThrIleCysGlyAlaGlyHisHisValSerLys<- : 51 !! !|||||| !|||||| !:!!||| ! !!:!! !! .!. !|||:!! ysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHi 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCA : 208300 52 : ><->IleAlaIleValIleCysAsnPheAlaLeuSerPheAlaIleValProCysIle : 68 :!! !! !|||:!! !!:!!! ! !|||.!!||| !:!::!!||| ! ! sIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGly 208301 : TATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGC : 208357 69 : LeuHisIleIleTyrAspGluLysAsnLeuAsnIleArgLeuLysLeuSerGlyLeuL : 88 :!! ! ||| !! ! :!!:!!!!! !! !!:!||||||:!!!!!.!! !| MetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaL 208358 : ATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTC : 208417 89 : euGlyPheCysIleThrAlaMetMetLysTyrCysValLeuThrIleArgArgProAs : 107 ||.!!|||! !!!:! !|||.!.! !|||||| :!!:!!|||:!!|||..! !|| euSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAs 208418 : TGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGA : 208474 108 : pIleGlnArgCysIleGluHisValLysSerAspTrpTrpGlnValLysPheSerSer : 126 ||||!:!!:!|||:!!|||:!!|||:!!:!!|||||| ! .!.|||:!! !..!..! pIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGlu 208475 : CATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAG : 208531 127 : AspArgGluLeuMetLeuLysTyrAlaGlyThrSerArgArgLeuSerThrIleSerV : 146 ||||||:!!:!!|||||| ! !!|||.!! !:!!|||!:!|||! !..!|||!!!! AspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysG 208532 : GACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCG : 208591 147 : alSerSerMetTyrIleAlaGlyPheIleTyrHisLeuIleLeuProPheCysAsn<- : 165 !:!!! !|||||| !!.. ......|||::::!! !||||||.!! !... lyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAs 208592 : GAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGA : 208648 166 : ><-><->ValHisLysIleAspAsnGlnThrIleArgProLeuValTyrProThrTyr : 181 |||.!.:!! !! !||| !||| !||| !||||||||||||..! ! pLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValPro 208649 : CAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCT : 208705 182 : SerGluPheHisGlnSerGlnIleSerProIleTyrGluLeuValTyrLeuAlaHisC : 201 !.! .!!! .!. !!:! !||||||:!: !!|||:!! !!||| !!.!!!.! LysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnL 208706 : AAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAAT : 208765 202 : ysMetCysGlyTyrThrMetTyrThrValThrAlaGlySerCysGlyLeuAlaAlaIl : 220 :!!! |||!:!..! :!!!.!:!!|||!.!|||:!!|||||||||||||||:! euLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLe 208766 : TGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCT : 208822 221 : ePheValThrHisAlaCysGlyGlnIleGluValLeuAlaSerArgLeuGluAspLeu : 239 :.!!!.!! !|||||||||||||||:!::!!:!!||| !||| !!:!!||| ! ||| uLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeu 208823 : GCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTG : 208879 240 : SerHisGlyGlnAsnPheGlyProSerLeuAspValAsnGlnArgIleAlaAlaIleV : 259 ! !!|||!:!.!. ! ! !..! !:!!:!!:!!||||||:!:||| !|||| ValAspGlyArgGlu---AspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleV 208880 : GTCGATGGACGGGAG---GACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCG : 208936 260 : alGluSerHisValArgIleLeuArg : 267 |||||..!|||||||||:!::!!!:! alGluGlnHisValArgValIleLys 208937 : TGGAGCAGCATGTTCGAGTGATCAAG : 208962 vulgar: CbirOr35 12 267 . KQ414889.1 208185 208962 + 349 M 38 114 G 0 6 M 114 342 G 0 9 M 80 240 G 1 0 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 208962 349 + . gene_id 7 ; sequence CbirOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208186 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208962 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208186 208962 349 + . alignment_id 7 ; Query CbirOr35 ; Align 208186 13 114 ; Align 208306 51 342 ; Align 208657 165 240 ; Align 208897 246 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 345 Query range: 10 -> 266 Target range: 278543 -> 279338 11 : SerProAsnValSerTyrGlnGluAspMetArgTyrIlePheLysProSerSerTrpI : 30 ||| !!:!! !!!!!::.!. !||| !! !|||! ! ! :!! !!:! !!|||. SerThrAspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpP 278544 : TCAACCGATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGT : 278601 31 : leLeuGlySerIleGlyIleTrpProLeuThrIleCysGlyAlaGly<->HisHisVa : 48 !!||| ! !!||||||:!!|||||||||!:!:!!|||! !.!! ! .!. ! :! heLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIl 278602 : TTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGAT : 278658 49 : lSerLysIleAlaIleValIleCysAsn<->PheAlaLeuSerPheAlaIleValPro : 66 !|||...:!:!.!:!!!.!:!! !!:! ||| !:!!.!!||| !:!:|||||| eSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValPro 278659 : CAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCG : 278715 67 : CysIleLeuHisIleIleTyrAspGluLys<->AsnLeuAsnIleArgLeuLysLeuS : 85 ||| !||| !! !:!: !|||:!!! :!!|||:!!! !:!:!!|||:!!! CysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetI 278716 : TGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGA : 278775 86 : erGlyLeuLeuGlyPheCysIleThrAlaMetMetLysTyrCysValLeuThrIleAr : 104 !|||! !|||.!!||||||! ! !|||! !!!:||||||! !:!!|||! ! || leGlyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerAr 278776 : TCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCG : 278832 105 : gArgProAspIleGlnArgCysIleGluHisValLysSerAspTrp<-><-><->Trp : 120 | !! ! ! ||| !:!|||:!:.!. !!:!!:::!!!|||||| gGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeu 278833 : CGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTT : 278889 121 : GlnValLysPheSerSerAspArgGluLeuMetLeuLysTyrAlaGlyThrSerArgA : 140 ..! !::: ......:::||||||:::||| ! ! !||| !!! !.!!||| SerTyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgS 278890 : TCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGAT : 278949 141 : rgLeuSerThrIleSerValSerSerMetTyrIleAlaGlyPheIleTyrHisLeuIl : 159 !|||:!!! !.!!|||!.!.!!! !|||||| !!.!||| !!.!!||| ! !:! erLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaVa 278950 : CTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGT : 279006 160 : eLeuProPheCysAsnValHisLys<-><->IleAspAsnGlnThrIleArgProLeu : 176 ::!!|||!!.! ! |||!.!! ! |||||||||:!!|||:!:||| !!! ! lMetProLeuPheAlaValArgThrGluIleIleAspAsnGluThrValArgSerGln 279007 : GATGCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAA : 279063 177 : ValTyrProThrTyrSerGluPheHisGlnSerGlnIleSerProIleTyrGluLeuV : 196 !.!!:!|||! !||| !!! .!!! !.!. !!!::! !|||||| !:!|||:!!| AlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleV 279064 : GCGTTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCG : 279123 197 : alTyrLeuAlaHisCysMetCysGlyTyrThrMetTyrThrValThrAlaGlySerCy : 215 || ! !!! !!!.|||:!!..!!.!!:!..!:!:|||:!!||||||!.!|||:!!|| alGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCy 279124 : TGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTG : 279180 216 : sGlyLeuAlaAlaIlePheValThrHisAlaCysGlyGlnIleGluValLeuAlaSer : 234 |.!!||| !|||:!:||||||! !|||!.!|||||||||.!!..!:!!|||!.!!!! sSerLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThr 279181 : CAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACA : 279237 235 : ArgLeuGluAspLeuSerHisGlyGlnAsnPheGlyProSerLeuAspValAsn<->G : 253 !:!|||!!: ! |||! ! !!||| !!!. !! !||||||..!..!:!! | LysLeuAspLysLeuIleAspGlyValLysGlyArgLysSerLeuSerThrHisGluG 279238 : AAGCTGGATAAGCTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAAC : 279297 254 : lnArgIleAlaAlaIleValGluSerHisValArgIleLeu : 266 |||||:!:!.!! !|||:!!||| !|||:!!!:!|||||| lnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu 279298 : AACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG : 279338 vulgar: CbirOr35 10 266 . KQ414889.1 278543 279338 + 345 M 35 105 G 0 3 M 12 36 G 0 3 M 19 57 G 0 3 M 43 129 G 0 9 M 48 144 G 0 6 M 85 255 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278544 279338 345 + . gene_id 8 ; sequence CbirOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278544 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278544 279338 . + . insertions 27 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278544 279338 345 + . alignment_id 8 ; Query CbirOr35 ; Align 278544 11 105 ; Align 278652 46 36 ; Align 278691 58 57 ; Align 278751 77 129 ; Align 278889 120 144 ; Align 279039 168 255 ; Align 279297 253 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 337 Query range: 12 -> 268 Target range: 212845 -> 213625 13 : AsnValSerTyrGlnGluAspMetArgTyrIlePheLysProSerSerTrpIleLeuG : 32 :!! !!!!|||:!!:!! :::... ... ! !!:! !!|||:!!||| AspCysThrTyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuL 212846 : GACTGTACCTACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGA : 212903 33 : lySerIleGlyIleTrpPro<-><->LeuThrIleCysGlyAlaGlyHisHisValSe : 49 ! !!! |||:!:|||||| ! ! !:!!! ! !! ! ! :!!:!!:! ysProThrGlyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIleAl 212904 : AACCAACGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGC : 212960 50 : rLysIleAlaIleValIleCysAsnPheAlaLeuSerPheAlaIleValProCysIle : 68 !::!:!:!.!! !..!:!!||| !! ! !:!!.!!!:! !:!!:!!||||||! ! aArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSer 212961 : TCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGT : 213017 69 : LeuHisIleIleTyrAspGluLysAsnLeuAsnIleArgLeuLysLeuSerGlyLeuL : 88 |||:!!:!:.!! !|||! !:::|||::: ...:!!:!!|||! !|||:!!! LeuTyrValPheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIleP 213018 : TTGTACGTGTTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTT : 213077 89 : euGlyPheCysIleThrAlaMetMetLysTyrCysValLeuThrIleArgArgProAs : 107 !!!.!||||||:!:.!!|||:!! !|||||| ! !|||! !:!!!.! !! !|| heAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAs 213078 : TTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGA : 213134 108 : pIleGlnArgCysIleGluHisValLysSerAspTrpTrpGlnValLysPheSerSer : 126 ||||!::! !|||:!!||||||:!!|||! !|||||| !.!.:!!! ! !..!..! pIleArgThrCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGlu 213135 : TATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAG : 213191 127 : AspArgGluLeuMetLeuLysTyrAlaGlyThrSerArgArgLeuSerThrIleSerV : 146 |||!:!|||:!!||| ! ! !!|||.!! !.!!!:!|||:!! !||||||!!!! AspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysA 213192 : GACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTG : 213251 147 : alSerSerMetTyrIleAlaGlyPheIleTyrHisLeuIleLeuProPheCys<-><- : 164 .!! !! !||||||! !!.! ! .!!||| !|||:!!:!!|||.!! !! laPhePheMetTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAs 213252 : CTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGA : 213308 165 : ><->AsnValHisLysIleAspAsnGlnThrIleArgProLeuValTyrProThrTyr : 181 ! ||| :!! ! !||| !|||.!!|||! !:!!||| !|||..!! pLysMetValAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSer 213309 : TAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCG : 213365 182 : SerGluPheHisGlnSerGlnIleSerProIleTyrGluLeuValTyrLeuAlaHisC : 201 !!! .!! !.!. !!:! !||||||:!: !!|||:!! !!!:!||| !!!. ArgPheIleValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnI 213366 : AGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGA : 213425 202 : ysMetCysGlyTyrThrMetTyrThrValThrAlaGlySerCysGlyLeuAlaAlaIl : 220 !!!:..!||| !!!::!!.!!:!!.!!!.!! !:!!|||.!!|||||||||:! leIleAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaVa 213426 : TTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGT : 213482 221 : ePheValThrHisAlaCysGlyGlnIleGluValLeuAlaSerArgLeuGluAspLeu : 239 :|||!.!..!|||||||||||||||!!:! :!!||| !||| !!|||||| !!||| lPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeu 213483 : GTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTG : 213539 240 : SerHisGlyGlnAsnPheGlyProSerLeuAspValAsnGlnArgIleAlaAlaIleV : 259 ! ! !!|||::!.!. ! ! !||| !:!!|||:!!.!.|||||||||!.!|||| IleAspGlyArgGlu---AspMetSerLysAsnValAspAspArgIleAlaValIleV 213540 : ATAGACGGTAGAGAG---GATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCG : 213596 260 : alGluSerHisValArgIleLeuArgPhe : 268 ||.!...!|||||||||||||||!:!!:: alAsnGlnHisValArgIleLeuLysTrp 213597 : TGAACCAGCATGTGCGGATACTGAAGTGG : 213625 vulgar: CbirOr35 12 268 . KQ414889.1 212845 213625 + 337 M 26 78 G 0 6 M 125 375 G 0 9 M 81 243 G 1 0 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212846 213625 337 + . gene_id 9 ; sequence CbirOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212846 213625 . + . KQ414889.1 exonerate:protein2genome:local exon 212846 213625 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212846 213625 337 + . alignment_id 9 ; Query CbirOr35 ; Align 212846 13 78 ; Align 212930 39 375 ; Align 213314 164 243 ; Align 213557 246 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 336 Query range: 12 -> 267 Target range: 217147 -> 217924 13 : AsnValSerTyrGlnGluAspMetArgTyrIlePheLysProSerSerTrpIleLeuG : 32 :!! !...|||::::::::::::... !.!!:!! !!:! !!|||:!:||| AspTyrGluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuL 217148 : GACTACGAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGA : 217205 33 : lySerIleGlyIleTrpPro<-><->LeuThrIleCysGlyAlaGlyHisHisValSe : 49 ! !!!!:|||:!!|||||| ! !|||! ! ! !!:!! !! ! !:!!! ysProMetGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTy 217206 : AACCGATGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTA : 217262 50 : rLysIleAlaIleValIleCysAsnPheAlaLeuSerPheAlaIleValProCysIle : 68 !|||:!: !! !!.!:!!||| !! ! !:!!|||||| !.!!||||||||| ! rLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSer 217263 : CAAACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCC : 217319 69 : LeuHisIleIleTyrAspGluLysAsnLeuAsnIleArgLeuLysLeuSerGlyLeuL : 88 :!!:!!:!:.!! !!!:! :!!:!!||| !! !!:!|||||||||! !|||! !| MetTyrValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProL 217320 : ATGTACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGT : 217379 89 : euGlyPheCysIleThrAlaMetMetLysTyrCysValLeuThrIleArgArgProAs : 107 || !||||||:!:! !|||.!.:!:||||||! ! !|||! !:!!!.!!:! !!|| euIlePheCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAs 217380 : TGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGA : 217436 108 : pIleGlnArgCysIleGluHisValLysSerAspTrpTrpGlnValLysPheSerSer : 126 ||||!::..!|||:!:..!...:!!:!! !!|||||| !!.!.|||!:!! !..!!.! pIleArgGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLys 217437 : CATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAA : 217493 127 : AspArgGluLeuMetLeuLysTyrAlaGlyThrSerArgArgLeuSerThrIleSerV : 146 ||||||||| !|||:!! ! !!|||..! !.!!|||!:!||| ! !:!!!!!. AspArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysT 217494 : GACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTA : 217553 147 : alSerSerMetTyrIleAlaGlyPheIleTyrHisLeuIleLeuProPheCys<-><- : 164 .!! !! !||||||! !... ...|||:::::! !:!!|||.!! !! hrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGl 217554 : CCTTCTTCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGG : 217610 165 : ><->AsnValHisLysIleAspAsnGlnThrIleArgProLeuValTyrProThrTyr : 181 ! !:!! :!!! !! |||! |||.!!! !|||||||||!:!||| ! yArgIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThr 217611 : GAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACG : 217667 182 : SerGluPheHisGlnSerGlnIleSerProIleTyrGluLeuValTyrLeuAlaHisC : 201 !.! ! .!! !.!.!!!!:: !!!!|||! !!|||:!!|||!:!!!! !!!.! LysTyrIleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnL 217668 : AAGTATATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAAT : 217727 202 : ysMetCysGlyTyrThrMetTyrThrValThrAlaGlySerCysGlyLeuAlaAlaIl : 220 !!:..!||| ! !|||:!! !:!!|||:!!!.!:!!|||.!!||||||||| euIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAl 217728 : TGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGC : 217784 221 : ePheValThrHisAlaCysGlyGlnIleGluValLeuAlaSerArgLeuGluAspLeu : 239 !|||!.!..!||||||||||||||||||||||||||| !!:! !!|||:!! !!||| aPheAlaValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeu 217785 : TTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTA : 217841 240 : SerHisGlyGlnAsnPheGlyProSerLeuAspValAsnGlnArgIleAlaAlaIleV : 259 ! ! !!|||::! ! ! !||| ! !|||:!! |||||||||::!|||| IleAspGlyArg---AlaAspMetSerAspThrValAspGlyArgIleAlaSerIleV 217842 : ATCGACGGTAGA---GCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCG : 217898 260 : alGluSerHisValArgIleLeuArg : 267 ||.....!|||||||||||||||!:! alSerGlnHisValArgIleLeuLys 217899 : TCAGTCAACACGTTCGGATATTAAAG : 217924 vulgar: CbirOr35 12 267 . KQ414889.1 217147 217924 + 336 M 26 78 G 0 6 M 125 375 G 0 9 M 80 240 G 1 0 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217148 217924 336 + . gene_id 10 ; sequence CbirOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217148 217924 . + . KQ414889.1 exonerate:protein2genome:local exon 217148 217924 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217148 217924 336 + . alignment_id 10 ; Query CbirOr35 ; Align 217148 13 78 ; Align 217232 39 375 ; Align 217616 164 240 ; Align 217856 245 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 322 Query range: 21 -> 360 Target range: 256652 -> 258444 22 : TyrIlePheLysProSerSerTrpIleLeuGlySerIleGlyIleTrpPro<-><->L : 39 |||! !.!!:!! !!:! !!|||.!!||| ! !!|||||| !|||||| ! TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerS 256653 : TACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGT : 256710 40 : euThrIleCysGlyAlaGlyHisHisValSerLysIleAlaIleValIleCysAsnPh : 58 !:!!! ! ! !! !!..:!!||||||! :!! !! !:!!:!!||| !! erSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGl 256711 : CGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGG : 256767 59 : eAlaLeuSerPheAlaIleValProCysIleLeuHisIleIleTyrAspGluLysAsn : 77 !:!!:!!! !|||.!!:!::!!||||||:!:||||||:!!.!! !|||!!: ! !:! ySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSer 256768 : TTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGT : 256824 78 : LeuAsnIleArgLeuLysLeuSerGlyLeuLeuGlyPheCysIleThrAlaMetMetL : 97 !!! ! :::::::::||| |||! !:!!.!! !!! |||! !::! ! PheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaA 256825 : TTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCA : 256884 98 : ysTyrCysValLeuThrIleArgArgProAspIleGlnArgCysIleGluHisValLy : 116 !.||| :!!||| !:!!!:! !! !||||||!:: !|||:!!||||||:!!:! snTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGl 256885 : ATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGA : 256941 117 : sSerAspTrpTrpGlnValLysPheSerSerAspArgGluLeuMetLeuLysTyrAla : 135 !!!!|||||| ! ..!|||!:! ..!!.!|||!:!:!!:!!|||:!!||| !!||| uThrAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAla 256942 : AACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCG : 256998 136 : GlyThrSerArgArgLeuSerThrIleSerValSerSerMetTyrIleAlaGlyPheI : 155 !! !.!!||| !:!!:!!|||.!!!!!!.!:!!! !||| ! ! !!.! ||| ArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheC 256999 : AGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttct : 257058 156 : leTyrHisLeuIleLeuProPhe<->CysAsnValHisLysIleAspAsnGlnThr<- : 173 ::: ::! ! ! !!.!. .!.:!! ! ! :!:! |||:!!||| ysPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrTh 257059 : gtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAAC : 257115 174 : ><->IleArgProLeuValTyrProThrTyrSerGluPheHisGlnSerGlnIleSer : 190 :!:||| !||| ! ! !!..!|||!.!:!!.!. .!. !.!. ||| rIleValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSer 257116 : GATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGT : 257172 191 : ProIleTyrGluLeuValTyrLeuAlaHisCysMetCysGlyTyrThrMetTyrThrV : 210 |||! !!|||:!!||| !!!! !!!. ! !! ..! !! ! ! !||| ProThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrS 257173 : CCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTA : 257232 211 : alThrAlaGlySerCysGlyLeuAlaAlaIlePheValThrHisAlaCysGlyGlnIl : 229 !|||!.!.!!! !! !.!!|||||||||:!!|||!.!|||||||||! !||||||:! erThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLe 257233 : GTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTT : 257289 230 : eGluValLeuAlaSerArgLeuGluAspLeuSerHisGlyGlnAsnPheGlyProSer : 248 : |||||| !||| !!:!! !!!:!!! !:!!! !..!!.. ! ! ... uThrValLeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLys 257290 : GACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaa : 257346 249 : LeuAspValAsnGlnArgIleAlaAlaIleValGluSerHisValArgIleLeu{Ar} : 267 !:!!!:!|||!.!!.!||||||||| !|||:!!|||:!:|||{||} ThrPheProPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeu{Ar} 257347 : acgtttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG} : 257403 268 : >>>> Target Intron 1 >>>> {g}PheSerAlaAlaValArgGluLeuLe : 276 760 bp {|}! ! ! ! ! !!.! !|||! ++ +-{g}CysValMetTyrArgAsnLeuLeuGl 257404 : gt.........................ac{G}TGCGTTATGTACCGAAACCTGTTGCA : 258190 277 : uGlnGluLeuCysLeuLeuGluPheAlaSerSerValPheThrMetCysLeuProGlu : 295 !|||.!. !! !! ! !:! !!:!! ! !.!. !! nGlnAsnGly***AsnArgThrTyrAsnAsnPheProIleHisSerTyrSerValIle 258191 : ACAAAATGGTTAAAATCGTACCTACAATAATTTTCCTATACACAGctattctgttatt : 258247 296 : TyrTyrCysIleValAspTrpGlnAspSerAspThrValGlyLeuThrThrTyrPheL : 315 :::||| ... :::|||... ...||| ...|||::::::||||||: PheTyrTyrPheGlnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheM 258248 : ttttattattttcaggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTA : 258307 316 : euLeuPheValSerPheCysPheAsnMetTyrIleLeuCysTyrIleGlyGluLeuIl : 334 !!:!!.!!:!!|||... ||||||::::::::::::|||||||||||||||:!!:! etIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLe 258308 : TGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATT : 258364 335 : eValGluLysSerSerGlnIleGlyLeuMetCysPheMetIleAspTrpTyrGlnLeu : 353 !..!|||:!! ! ! :::||| |||::: :!! !! !::...||| uThrGluGlnValProGluIle***LeuIleValThrTyrValHisLysTrpAsnLeu 258365 : AACAGAACAGGTACCagagatttaattaattgtcaCATATGTACACAAATGGaacttg : 258421 354 : ProAlaLysSerValArgSer : 360 |||||||||!!! ***LysIleSerValArgThr 258422 : tgaaaaatttcagtaagGACT : 258444 vulgar: CbirOr35 21 360 . KQ414889.1 256652 258444 + 322 M 17 51 G 0 6 M 124 372 G 0 3 M 10 30 G 0 6 M 94 282 S 0 2 5 0 2 I 0 756 3 0 2 S 1 1 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256653 258444 322 + . gene_id 11 ; sequence CbirOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256653 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256653 257404 . + . insertions 15 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 258164 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258163 258164 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 258165 258444 . + . KQ414889.1 exonerate:protein2genome:local exon 258165 258444 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256653 258444 322 + . alignment_id 11 ; Query CbirOr35 ; Align 256653 22 51 ; Align 256710 39 372 ; Align 257085 163 30 ; Align 257121 173 282 ; Align 258166 268 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 297 Query range: 3 -> 284 Target range: 226876 -> 227731 4 : SerArgAspValHisAlaIleSerProAsnValSerTyrGlnGluAspMetArgTyrI : 23 ||| !:!!:!! :!!:!!:!! !!.!. !..!||||||||| !!:!!!.! ! SerAlaAsnLeuAlaSerLeuAlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuS 226877 : TCGGCGAACCTCGCGTCTCTCGCGACAGAGAACGACTATCAGGAATACTTGAACCTGA : 226934 24 : lePheLysProSerSerTrpIleLeuGlySerIleGlyIleTrpProLeuThrIleCy : 42 !.!.:!! !!:! !!|||:!:||| ! !!:!!||||||||||||! !:!! ! erIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgLy 226935 : GCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAA : 226991 43 : sGlyAla<-><->GlyHisHisValSerLysIleAlaIleValIleCysAsnPheAla : 59 .!!:!! |||... ! !!||| !:!: ! ! !!:!!||| !! ! sSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeu 226992 : AAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTG : 227048 60 : LeuSerPheAlaIleValProCysIleLeuHisIleIleTyrAspGluLysAsnLeuA : 79 :!!||||||! !:!:||| !! !! !|||:!!:!::!! !!:! !|||..! ! MetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAlaT 227049 : ATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTT : 227108 80 : snIleArgLeuLysLeuSerGlyLeuLeuGlyPheCysIleThrAlaMetMetLysTy : 98 !!! !! !||||||:!!! !|||! !:!!..!|||! ! ! !:!!:!::!:||||| yrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuLysTy 227109 : ACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTA : 227165 99 : rCysValLeuThrIleArgArgProAspIleGlnArgCysIleGluHisValLysSer : 117 |! !:!!||||||.!!!.!..! !||||||! ..!|||:!!|||!..:!!|||!!! rSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIleLysTrp 227166 : CTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGG : 227222 118 : AspTrpTrpGlnValLysPheSerSerAspArgGluLeuMetLeuLysTyrAlaGlyT : 137 |||||| !.!.:!!!:!!:! !..!||||||.!.:!!|||:!!! !|||||| ! AspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrT 227223 : GACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATT : 227282 138 : hrSerArgArgLeuSerThrIleSerValSerSerMetTyrIleAlaGlyPheIleTy : 156 !.!!|||!:!|||! !||||||!!!..!! !! !:!:!:!! ::: ...:: yrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheValPhePh 227283 : ACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtattttt : 227339 157 : rHisLeuIleLeuProPhe<-><->CysAsnValHisLysIleAsp<->AsnGlnThr : 172 :::::!!:!!:!!|||.!! ! !:!||| ! ! ||| |||!!.!:! eTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSer 227340 : ctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGT : 227396 173 : IleArgProLeuValTyrProThrTyrSerGluPheHisGlnSerGlnIleSerProI : 192 !! !! !:!! !!:!||| ! !.! .!! !.!. !!:: !||||||. TyrIleGlnMetProPheProPheProLysIleIleAlaAspValArgTyrSerProP 227397 : TACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTT : 227456 193 : leTyrGluLeuValTyrLeuAlaHisCysMetCysGlyTyrThrMetTyrThrValTh : 211 !! !!|||:!! !!!:!! !!.!!!.! !:!: ||| !..!:!!:!! !||||| heAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuHisGlyValTh 227457 : TCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCAC : 227513 212 : rAlaGlySerCysGlyLeuAlaAlaIlePheValThrHisAlaCysGlyGlnIleGlu : 230 |:!!!.!:!!|||.!!:!!||||||:!:.!!!.!..!|||||||||||||||!!:||| rSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGlu 227514 : GTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAG : 227570 231 : ValLeuAlaSerArgLeuGluAspLeuSerHisGlyGlnAsnPheGlyProSerLeuA : 250 ||||||!.!||| !!|||! ! !!|||! ! !!|||::! ! ! !||| ! ValLeuValSerTrpLeuGlyHisLeuIleAspGlyArg---AlaAspMetSerLysT 227571 : GTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGCAGA---GCGGATATGAGCAAAA : 227627 251 : spValAsnGlnArgIleAlaAlaIleValGluSerHisValArgIleLeuArgPheSe : 269 :!!:!!.!.|||||||||::!|||||| !|||||||||||||||!:!! ! hrLeuAspAspArgIleAlaSerIleValThrHisHisValArgIleLeuLysCysVa 227628 : CACTGGATGATAGAATCGCTAGCATCGTCACTCACCACGTTCGAATATTGAAGTGTGT : 227684 270 : rAlaAlaValArgGluLeuLeuGlnGluLeuCysLeuLeuGluPhe : 284 !.!!..!:!! ! !|||! !!::!!:! !! !||||||...||| lThrCysIleTyrLeuLeuTyrArgAsp***PheLeuLeuAsnPhe 227685 : AACGTGTATCTATTTGTTGTATCGTGATTAATTTCTcttgaatttt : 227731 vulgar: CbirOr35 3 284 . KQ414889.1 226876 227731 + 297 M 41 123 G 0 6 M 118 354 G 0 6 M 7 21 G 0 3 M 74 222 G 1 0 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226877 227731 297 + . gene_id 12 ; sequence CbirOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226877 227731 . + . KQ414889.1 exonerate:protein2genome:local exon 226877 227731 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226877 227731 297 + . alignment_id 12 ; Query CbirOr35 ; Align 226877 4 123 ; Align 227006 45 354 ; Align 227366 163 21 ; Align 227390 170 222 ; Align 227612 245 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 265 Query range: 21 -> 267 Target range: 262849 -> 263602 22 : TyrIlePheLysProSerSerTrpIleLeuGlySerIleGlyIleTrpProLeu<->< : 40 |||! !.!.:!! !!:! !!|||:!:||| ! !!|||||| !||||||||| TyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerA 262850 : TACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCG : 262907 41 : ->ThrIleCysGlyAlaGlyHisHisValSerLysIleAlaIleValIleCysAsnPh : 58 :!!|||! !! !! !!.. !:!!!!! :!! !||||||:!!||| !!! laSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCy 262908 : CCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTG : 262964 59 : eAlaLeuSerPheAlaIleValProCysIleLeuHisIleIleTyrAspGluLysAsn : 77 ! !:!! !! !.!!:!!:!!|||! !||||||||||||:!! !!:! :!!||| sLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsn 262965 : TCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAAT : 263021 78 : LeuAsnIleArgLeuLysLeuSerGlyLeuLeuGlyPheCysIleThrAlaMetMetL : 97 !!!:!!!!:!:!|||:!!:!! !|||! !|||||| !! .!!..!!.!|||!!:! PheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleA 263022 : TTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCA : 263081 98 : ysTyrCysValLeuThrIleArgArgProAspIleGlnArgCysIleGluHisValLy : 116 !.||| ! !||| !:!!!.!!!! !||||||||| !!|||:!::!!||||||:! snTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGl 263082 : ATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCA : 263138 117 : sSerAspTrpTrpGlnValLysPheSerSerAspArgGluLeuMetLeuLysTyrAla : 135 !..!||||||!! |||! ! !..!|||!:!...:!!||||||||| !!||| nGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAla 263139 : GGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCG : 263195 136 : GlyThrSerArgArgLeuSerThrIleSerValSerSerMetTyrIleAlaGlyPheI : 155 ! !.!!||| !:!!:!!.!! !!!!!.!! !! !||| ! ! ::! !.!. LysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetC 263196 : AAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGT : 263255 156 : leTyrHisLeuIleLeuProPhe<->CysAsnValHisLysIleAspAsnGlnThr<- : 173 ! ! !|||:!! ! !!||| .!.||| !:!! !! !|||:!!||| ysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrAr 263256 : GCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAG : 263312 174 : ><->IleArgProLeuValTyrProThrTyrSerGluPheHisGlnSerGlnIleSer : 190 :!!||| !||| !! !|||..!|||!.!|||.!! !! ! !.!.! !:! gIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThrAsn 263313 : AATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAAT : 263369 191 : ProIleTyrGluLeuValTyrLeuAlaHisCysMetCysGlyTyrThrMetTyrThrV : 210 |||! !!|||:!! !! ! !.!!!!.! !:!!! |||!:!! !:!: !.!!. ProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaT 263370 : CCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGA : 263429 211 : alThrAlaGlySerCysGlyLeuAlaAlaIlePheValThrHisAlaCysGlyGlnIl : 229 .!|||!.!|||:!!! !|||:!!.!!|||:!:|||!.! !|||||||||||||||:! hrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLe 263430 : CAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTT : 263486 230 : eGluValLeuAlaSerArgLeuGluAspLeuSerHisGlyGlnAsnPheGlyProSer : 248 :.!.|||||| !||| !!:!! !!!:!!! !:!! !...!.. !! ! !!.! uAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLys 263487 : GAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAG : 263543 249 : LeuAspValAsnGlnArgIleAlaAlaIleValGluSerHisValArgIleLeuArg : 267 ! ! ! ! ..!|||!.!!.!||||||||| !|||:!!|||:!!|||||| AsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeuArg 263544 : AATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTGAGG : 263602 vulgar: CbirOr35 21 267 . KQ414889.1 262849 263602 + 265 M 18 54 G 0 6 M 123 369 G 0 3 M 10 30 G 0 6 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262850 263602 265 + . gene_id 13 ; sequence CbirOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262850 263602 . + . KQ414889.1 exonerate:protein2genome:local exon 262850 263602 . + . insertions 15 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262850 263602 265 + . alignment_id 13 ; Query CbirOr35 ; Align 262850 22 54 ; Align 262910 40 369 ; Align 263282 163 30 ; Align 263318 173 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 265 Query range: 21 -> 267 Target range: 266637 -> 267390 22 : TyrIlePheLysProSerSerTrpIleLeuGlySerIleGlyIleTrp<->ProLeuT : 40 |||! !.!.:!! !!:! !!|||.!!||| ! !!|||||| !||| ||||||: TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuS 266638 : TACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGT : 266695 41 : hrIleCysGlyAlaGlyHisHis<->ValSerLysIleAlaIleValIleCysAsnPh : 58 !!:!! ..! ! !.!.!.. |||||| ! ! !|||||||||||| !!! erLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCy 266696 : CACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTG : 266752 59 : eAlaLeuSerPheAlaIleValProCysIleLeuHisIleIleTyrAspGluLysAsn : 77 !:!!:!! !|||.!!:!!:!!||||||:!:!!!|||:!!:!! !!:!!::!!!:! sSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSer 266753 : CTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGT : 266809 78 : LeuAsnIleArgLeuLysLeuSerGlyLeuLeuGlyPheCysIleThrAlaMetMetL : 97 :!!..!! !:!:!!|||:!!! !|||! !|||.!! !!! .!!..!!.! !!:! IleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleA 266810 : ATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTA : 266869 98 : ysTyrCysValLeuThrIleArgArgProAspIleGlnArgCysIleGluHisValLy : 116 !.||| !..!||| !:!!|||!!! !!!:|||!:: !!|||:!!||||||:!!:! snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 266870 : ACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCA : 266926 117 : sSerAspTrpTrpGlnValLysPheSerSerAspArgGluLeuMetLeuLysTyrAla : 135 !!!!|||||| !! |||! !!..!|||!:!:!!:!!||||||||| !!||| nThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAla 266927 : AACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCG : 266983 136 : GlyThrSerArgArgLeuSerThrIleSerValSerSerMetTyrIleAlaGlyPheI : 155 !!! !.!!||| !:!!:!!! !.!!!!!!.!:!!! !||| ! !!.!! !.!! ArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuG 266984 : AGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCG : 267043 156 : leTyrHisLeuIleLeuProPhe<->CysAsnValHisLysIleAspAsnGlnThr<- : 173 !||| !:!!||| ! !!||| .!...! :!!:!!! !|||:!!||| lyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrAr 267044 : GCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAG : 267100 174 : ><->IleArgProLeuValTyrProThrTyrSerGluPheHisGlnSerGlnIleSer : 190 :!!!.!! !||| !! ! !!..!|||!.!:!!.!. ! ! !.!.! !||| gIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSer 267101 : GATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGC : 267157 191 : ProIleTyrGluLeuValTyrLeuAlaHisCysMetCysGlyTyrThrMetTyrThrV : 210 |||! !!|||:!!||| !:!!:!!!!.! !:!:! |||!:!! !:!! !!:!! ProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerS 267158 : CCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGA : 267217 211 : alThrAlaGlySerCysGlyLeuAlaAlaIlePheValThrHisAlaCysGlyGlnIl : 229 !..!!.!|||:!!! !.!!|||||||||:!:|||!.!.!!|||||||||||||||:! erValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLe 267218 : GCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCT : 267274 230 : eGluValLeuAlaSerArgLeuGluAspLeuSerHisGlyGlnAsnPheGlyProSer : 248 :...|||||| !! ! !!:!!:!!!!:!!! !:!! !!...!.. !.!! !!.! uSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLys 267275 : GAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAG : 267331 249 : LeuAspValAsnGlnArgIleAlaAlaIleValGluSerHisValArgIleLeuArg : 267 !! ! ! !.!.!:!|||!.!!.!:!!|||||| !|||:!!|||:!!|||||| AsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeuArg 267332 : AACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGAGG : 267390 vulgar: CbirOr35 21 267 . KQ414889.1 266637 267390 + 265 M 16 48 G 0 3 M 10 30 G 0 3 M 115 345 G 0 3 M 10 30 G 0 6 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266638 267390 265 + . gene_id 14 ; sequence CbirOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266638 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266638 267390 . + . insertions 15 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266638 267390 265 + . alignment_id 14 ; Query CbirOr35 ; Align 266638 22 48 ; Align 266689 38 30 ; Align 266722 48 345 ; Align 267070 163 30 ; Align 267106 173 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 256 Query range: 276 -> 397 Target range: 286806 -> 287243 277 : GlnGluLeuCysLeuLeuGluPheAlaSerSerValPheThrMetCysLeuProGluT : 296 .!.!!:||||||! !! !.!. !!.!! !:!!:!!.!!.!!.!. !:!! !..!! AspAspLeuCysTyrTyrHisThrValMetAlaIleIleAlaPheValMetTyrSerL 286807 : GACGACTTGTGTTATTACCATACTGTAATGGCAATAATTGCATTCGTCATGTACTCGT : 286864 297 : yrTyrCysIleValAspTrpGlnAspSerAspThrValGlyLeuThrThrTyrPheLe : 315 ! !.!! !!!:|||:!!.!.|||!!:|||:!!||| !! !||||||! ! euSerValPhe***GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysTh 286865 : TGTCAGTTTTCTAGGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCAC : 286921 316 : uLeuPheValSerPheCysPheAsnMetTyrIleLeuCysTyrIleGlyGluLeuIle : 334 !|||.!.||||||||| ||||||:!:!:!|||||||||||||||||||||:!!:!! rLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeu 286922 : GTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTC : 286978 335 : ValGluLys >>>> Target Intron 1 >>>> SerSerGlnIleGlyLeuMe : 344 !|||::: 74 bp !!! !:!!:!!|||||| SerGluGln++ ++CysLeuLysValGlyLeuSe 286979 : TCCGAACaggt.........................agtGCTTAAAAGTCGGCTTGTC : 287082 345 : tCysPheMetIleAspTrpTyrGlnLeuProAlaLysSerValArgSerLeuValLeu : 363 !!:!|||||||||||||||!::||||||!.!|||!!!!.!!:!.!!|||:!!||| rThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeu 287083 : AACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTG : 287139 364 : MetIleAlaMetSerSerGlnProIleLysIleSerAlaGlyArgMetIleAspIleS : 383 !!:.!!|||:!!|||!:!... !!||||||:!!!!!||||||!:!!!:||||||:!!| IlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuS 287140 : ATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCT : 287199 384 : erLeuAlaThrPheGlyAsnValLeuLysThrSerLeuAlaTyr : 397 |||||::!!:!||| !!!:!||| !! ! !!:!|||:!!||| erLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 287200 : CTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 287243 vulgar: CbirOr35 276 397 . KQ414889.1 286806 287243 + 256 M 61 183 5 0 2 I 0 70 3 0 2 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286807 287243 256 + . gene_id 15 ; sequence CbirOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286807 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286807 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287243 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287243 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286807 287243 256 + . alignment_id 15 ; Query CbirOr35 ; Align 286807 277 183 ; Align 287064 338 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 244 Query range: 8 -> 267 Target range: 274344 -> 275136 9 : AlaIleSerProAsnValSerTyrGlnGluAspMetArgTyrIlePheLysProSerS : 28 ||||||!:! !!.!!.!!:!!:!.!.... !! !|||! !!!.:!! !!:! AlaIleAsnValThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnA 274345 : GCGATAAACGTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACC : 274402 29 : erTrpIleLeuGlySerIleGlyIleTrpProLeuThrIleCysGlyAlaGlyHisHi : 47 !!|||.!!||| ! !!|||||| |||||||||.!! ! !.!! ! !.! rgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGl 274403 : GATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGA : 274459 48 : s<-><->ValSerLysIleAlaIleValIleCysAsnPheAlaLeuSerPheAlaIle : 64 . :!!||| ! ::: ||| :::||| !!! ! !:!! !! !.!!:!! uArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrVal 274460 : ACGAATCCTTTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTT : 274516 65 : ValProCysIleLeuHisIleIleTyrAspGluLysAsnLeuAsnIleArgLeuLysL : 84 :!!||| !!|||!!!||||||||| ! !!::!!!:!|||:!!:!:!:!||||||| IleProSerIlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysL 274517 : ATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGT : 274576 85 : euSerGlyLeuLeuGlyPheCysIleThrAlaMetMetLysTyrCysValLeuThrIl : 103 || !|||! !|||||| !!! .!!! !!.! !!:!!.||| !..!||| !:! euLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLe 274577 : TGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCT : 274633 104 : eArgArgProAspIleGlnArgCysIleGluHisValLysSerAspTrpTrpGlnVal : 122 !|||!!! !!!:|||!:: !!|||:!:||||||:!!:!!!!!|||||| !! ||| uArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleVal 274634 : ACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTG : 274690 123 : LysPheSerSerAspArgGluLeuMetLeuLysTyrAlaGlyThrSerArgArgLeuS : 142 ! !!..!|||!:!:!!:!!||||||||| !!||| !! !.!!||| !:!!: ThrArgProGluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValA 274691 : ACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCG : 274750 143 : erThrIleSerValSerSerMetTyrIleAlaGlyPheIleTyrHisLeuIleLeuPr : 161 !!! !.!!!!!!.!:!!! !||| ! !!.!! !.!! !||| !:!!||| ! ! laIlePheCysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAl 274751 : CGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGC : 274807 162 : oPhe<->CysAsnValHisLysIleAspAsnGln<-><->ThrIleArgProLeuVal : 177 !||| .!...! !:!!:!!! |||:!! |||:!:!.! !||| ! aPheThrMetGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuPro 274808 : GTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCG : 274864 178 : TyrProThrTyrSerGluPheHisGlnSerGlnIleSerProIleTyrGluLeuValT : 197 ! ! !.!!|||!.!:!!.!! ! ! !.!.! ||||||! !!|||:!!||| CysLysAlaTyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValL 274865 : TGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCC : 274924 198 : yrLeuAlaHisCysMetCysGlyTyrThrMetTyrThrValThrAlaGlySerCysGl : 216 ! !:!!!!.! !:!!! |||!:!! !:!! !!:!! !.!!!.!|||:!!! !.! euAlaSerGlnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSe 274925 : TTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAG : 274981 217 : yLeuAlaAlaIlePheValThrHisAlaCysGlyGlnIleGluValLeuAlaSerArg : 235 !|||||||||:!:|||!.!.!!||||||! !||||||:!:...|||||| !! ! !! rLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrp 274982 : CCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGG : 275038 236 : LeuGluAspLeuSerHisGlyGlnAsnPheGlyProSerLeuAspValAsnGlnArgI : 255 :!! !!:!!! !:!! !...!.. ... .....!| IleThrGluPheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluI 275039 : ATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGA : 275098 256 : leAlaAlaIleValGluSerHisValArgIleLeuArg : 267 ||!.!!.!:!!|||||| !|||:!!|||:!!|||||| leGlyValValValGluHisHisLeuArgValLeuArg 275099 : TCGGCGTGGTTGTCGAACATCATCTGAGGGTACTCAGG : 275136 vulgar: CbirOr35 8 267 . KQ414889.1 274344 275136 + 244 M 39 117 G 0 6 M 115 345 G 0 3 M 9 27 G 0 6 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274345 275136 244 + . gene_id 16 ; sequence CbirOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274345 275136 . + . KQ414889.1 exonerate:protein2genome:local exon 274345 275136 . + . insertions 15 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274345 275136 244 + . alignment_id 16 ; Query CbirOr35 ; Align 274345 9 117 ; Align 274468 48 345 ; Align 274816 163 27 ; Align 274849 172 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 237 Query range: 8 -> 266 Target range: 259733 -> 260522 9 : AlaIleSerProAsnValSerTyrGlnGluAspMetArgTyrIlePheLysProSerS : 28 :!!:!:! ! !.!...!|||!:! ... !!! !|||! !.!!:!! !!:! SerValPheValGluThrSerPheThrSerHisSerAspTyrSerLeuGlnPheAsnA 259734 : TCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCCAATTTAATC : 259791 29 : erTrpIleLeuGlySerIleGlyIleTrpPro<-><->LeuThrIleCysGlyAlaGl : 45 !!|||.!!||| ! !!|||||| !|||||| ! !:!!! ! !! !! rgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerThrThrArgLeuGl 259792 : GATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCACGACCAGACTCGA : 259848 46 : yHisHisValSerLysIleAlaIleValIleCysAsnPheAlaLeuSerPheAlaIle : 64 ! ! !:!!||| ||| !||| !!|||||| !! !.!!:!! ! !!.!!:!: uLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIleLeuValThrLeu 259849 : GAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATACTGGTCACCCTG : 259905 65 : ValProCysIleLeuHisIleIleTyrAspGluLysAsnLeuAsnIleArgLeuLysL : 84 :!!||||||:!!||||||!!::!! !!!::!!:!!!:!||| !!!!:!:! !|||: IleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrMetLysThrLysV 259906 : ATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGAAGG : 259965 85 : euSerGlyLeuLeuGlyPheCysIleThrAlaMetMetLysTyrCysValLeuThrIl : 103 !! !|||! !||| ! !!! .!!..!!.! !!:!!.||| ..!||| !:! alLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrThrThrLeuLeuLe 259966 : TGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTGTT : 260022 104 : eArgArgProAspIleGlnArgCysIleGluHisValLysSerAspTrpTrpGlnVal : 122 :||| !! !||||||! !!!|||:!:|||||||||:!!!:!|||||| ! :!! uArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAspTrpArgIleIle 260023 : GAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGAATTATA : 260079 123 : LysPheSerSerAspArgGluLeuMetLeuLysTyrAlaGlyThrSerArgArgLeuS : 142 ! ! ..!!.!|||!:!.!.:!!||||||!:!|||||| ! !.!!||| !:!!: ThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgTyrValA 260080 : ACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGATACGTCG : 260139 143 : erThrIleSerValSerSerMetTyrIleAlaGlyPheIleTyrHisLeuIleLeuPr : 161 !!.!! !!!!!.!:!!! !:!! ! !!.!! !.!. !!:! !|||:!! ! laAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCysLeuValThrVa 260140 : CTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTCACGGT : 260196 162 : oPhe<->CysAsnValHisLysIleAspAsnGlnThr<-><->IleArgProLeuVal : 177 !!!. .!.||| :!!:!:! |||:!!||| :!!!.!! !||| ! lLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleValHisLeuLeuPro 260197 : GTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTGCCG : 260253 178 : TyrProThrTyrSerGluPheHisGlnSerGlnIleSerProIleTyrGluLeuValT : 197 ! ! !!..!|||!.!|||.!. .!. !.!. !||||||!!: !!|||:!!||| CysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetAsnGluIleValL 260254 : TGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGATTGTTC : 260313 198 : yrLeuAlaHisCysMetCysGlyTyrThrMetTyrThrValThrAlaGlySerCysGl : 216 !:!!!.!!!.! !:!:! |||!:!! !:!! !!:!! !|||!.!|||! !! !.! euValValGlnPheValSerGlyPheIleValAsnSerSerThrValGlyIlePheSe 260314 : TCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTTCAG : 260370 217 : yLeuAlaAlaIlePheValThrHisAlaCysGlyGlnIleGluValLeuAlaSerArg : 235 !|||||||||:!!.!...!.!!|||||||||||||||:!:.!.|||||| !..! !! rLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMetGluTrp 260371 : TCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAATGG : 260427 236 : LeuGluAspLeuSerHisGlyGlnAsnPheGlyProSerLeuAspValAsnGlnArgI : 255 :!! !!!:!!! ! !!! !..!!.. ! !! !!.! !! ! ! !:!!..!| IleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaProPheLysGluI 260428 : ATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTCCTTTCAAGGAGA : 260487 256 : leAlaAlaIleValGluSerHisValArgIleLeu : 266 ||!.!!.!||||||||| !|||:!!||| !||| leGlyValIleValGluHisHisLeuArgAlaLeu 260488 : TCGGAGTGATTGTCGAACATCATTTGAGAGCACTC : 260522 vulgar: CbirOr35 8 266 . KQ414889.1 259733 260522 + 237 M 30 90 G 0 6 M 124 372 G 0 3 M 10 30 G 0 6 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259734 260522 237 + . gene_id 17 ; sequence CbirOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259734 260522 . + . KQ414889.1 exonerate:protein2genome:local exon 259734 260522 . + . insertions 15 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259734 260522 237 + . alignment_id 17 ; Query CbirOr35 ; Align 259734 9 90 ; Align 259830 39 372 ; Align 260205 163 30 ; Align 260241 173 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 235 Query range: 12 -> 240 Target range: 194144 -> 194834 13 : AsnValSerTyrGlnGluAspMetArgTyrIlePheLysProSerSerTrpIleLeuG : 32 ||||||!:!|||:!! !|||! ..!||| ! !!::! !:!!!.! !:!!||| AsnValAsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuLeuT 194145 : AACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAA : 194202 33 : lySerIleGlyIleTrpProLeuThrIleCysGlyAlaGlyHisHisValSerLysIl : 51 ! !!||||||||||||||| ! ! !! ! ! !! !... ! ! ! hrProIleGlyIleTrpProArgGluAspSerLeuArgAspArgValArgLeuPheAl 194203 : CACCGATCGGTATCTGGCCAAGGGAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGC : 194259 52 : eAlaIleValIleCysAsnPheAlaLeuSerPheAlaIleValProCysIleLeuHis : 70 ! !! !! !:!: ! ! ! !:!!!!!||| !:!:|||||| !:!::!!:!! aGlnThrGlyValValPheAlaLeuMetCysPheLeuLeuValProHisValIleTyr 194260 : TCAAACTGGCGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTAC : 194316 71 : IleIleTyrAspGluLysAsnLeuAsnIleArgLeuLysLeuSerGlyLeuLeuGlyP : 90 ! ! !!:!||| :!!:!!|||!..! !:!!|||:!!! !!.! !! !! !| ThrTyrPheAspCysGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValP 194317 : ACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGT : 194376 91 : heCysIleThrAlaMetMetLysTyrCysValLeuThrIleArgArgProAspIleGl : 109 || !!:!: !|||!!:!!:|||!:!!! ..!:!!! !:!:!.!||| !!!:|||:: heSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnArgLysGluIleAr 194377 : TCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAG : 194433 110 : nArgCysIleGluHisValLysSerAspTrpTrpGlnValLysPheSerSerAspArg : 128 ! !|||:!: !.!.:!!:!!!!!.!.!:: ! .!.|||:!!! !..!..!|||||| gPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCysGluGluAspArg 194434 : ATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGA : 194490 129 : GluLeuMetLeuLysTyrAlaGlyThrSerArgArgLeuSerThrIleSerValSerS : 148 :!!:!!||| !!!.! !||| !! !.!!||| !!!!!!!|||:!:! !:!!.!! GlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyL 194491 : CAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGAC : 194550 149 : erMetTyrIleAlaGlyPheIleTyrHisLeuIleLeuProPheCysAsn<-><->Va : 165 ! ||| !!.!!.!!!. ||||||:!!|||||||||.!. ::: :! euSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluArgIl 194551 : TTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGAT : 194607 166 : lHisLysIleAspAsnGlnThrIleArgProLeuValTyrProThrTyrSerGluPhe : 184 ! !||| ||||||...||| ! !|||||| !||| !!:! !!! !! ||| eValLysGluAspAsnSerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhe 194608 : TGTCAAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTC : 194664 185 : HisGlnSerGlnIleSerProIleTyrGluLeuValTyrLeuAlaHisCysMetCysG : 204 ! !! !:!! !|||||||||||||||:!!..!!:!:!!:!!!!. :!! !. PheAlaIleGluAspSerProIleTyrGluIleThrPheValSerGlnIleLeuIleS 194665 : TTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTA : 194724 205 : lyTyrThrMetTyrThrValThrAlaGlySerCysGlyLeuAlaAlaIlePheValTh : 223 !! !! !!!:! :!!..!!.!..!|||! !! !.!!|||!.!|||! !.!!:!!! erSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMe 194725 : GCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTAT : 194781 224 : rHisAlaCysGlyGlnIleGluValLeuAlaSerArgLeuGluAspLeuSer : 240 !|||..!|||||| !.!!|||||| !::!!!!|||:!!||| !:!!||| tHisCysCysGlyLeuPheGluValThrSerArgArgMetGluThrIleSer 194782 : GCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGATGGAGACTATTTCT : 194834 vulgar: CbirOr35 12 240 . KQ414889.1 194144 194834 + 235 M 152 456 G 0 6 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194145 194834 235 + . gene_id 18 ; sequence CbirOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194145 194834 . + . KQ414889.1 exonerate:protein2genome:local exon 194145 194834 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194145 194834 235 + . alignment_id 18 ; Query CbirOr35 ; Align 194145 13 456 ; Align 194607 165 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 232 Query range: 21 -> 267 Target range: 236852 -> 237599 22 : TyrIlePheLysProSerSerTrpIleLeuGlySerIleGlyIleTrpProLeuThrI : 41 |||! !.!!:!! !!:! !!||| :!! !|||||||||! !||||||! ! ! TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheS 236853 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCT : 236910 42 : leCysGlyAlaGlyHisHisValSerLysIleAlaIleValIleCysAsnPheAlaLe : 60 ! ..! !! !...:!!:!!|||::!||| !! !||||||||| !! !|||:! erSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIl 236911 : CGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAAT : 236967 61 : uSerPheAlaIleValProCysIleLeuHisIleIleTyrAspGluLysAsnLeuAsn : 79 ! !|||:!!|||:!!|||||| ||||||:!!!!: !!::!! !!.!!!! !! eLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyr 236968 : ACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTAC : 237024 80 : IleArgLeuLysLeuSerGlyLeuLeuGlyPheCysIleThrAlaMetMetLysTyrC : 99 ! !:!:!!|||:!! !|||! !|||.!! !!! :!: !..!!!:!!:!..||| ThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrT 237025 : ACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACA : 237084 100 : ysValLeuThrIleArgArgProAspIleGlnArgCysIleGluHisValLysSerAs : 118 !:!!||| !:!:|||||| ! !|||!::!.!! !.!!.!.|||:!!:!!!!!|| hrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAs 237085 : CCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGA : 237141 119 : pTrpTrpGlnValLysPheSerSerAspArgGluLeuMetLeuLysTyrAlaGlyThr : 137 |||| ! !..! ...... :::|||:::||||||||||||||| ! ! pTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPhe 237142 : TTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTT : 237198 138 : SerArgArgLeuSerThrIleSerValSerSerMetTyrIleAlaGlyPheIleTyrH : 157 ||| |||! !:!!.!!|||||| !!!!! !.!. !!.!|||.!.:!! : Ser---ArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyT 237199 : AGT---CGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGAT : 237255 158 : isLeuIleLeuProPheCysAsn<-><->ValHisLysIleAspAsnGlnThr<-><- : 173 !!! !:!!:!! !! ! !!.! ||| ! !:!!! |||:!!||| yrCysValMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIl 237256 : ATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGAT : 237312 174 : >IleArgProLeuValTyrProThrTyrSerGluPheHisGlnSerGlnIleSerPro : 191 :!:||| !||| !! |||! !|||!.!! !.!!! !! ! !.!.! !:! !! eLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThr 237313 : CTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACT : 237369 192 : IleTyrGluLeuValTyrLeuAlaHisCysMetCysGlyTyrThrMetTyrThrValT : 211 !!: !!!!::!!||| !|||:!!!!.! !:!:! !|||!:!! ! ! !!!.! !. MetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerA 237370 : ATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTG : 237429 212 : hrAlaGlySerCysGlyLeuAlaAlaIlePheValThrHisAlaCysGlyGlnIleGl : 230 !! !.!! ! .!!|||.!!::! !.!...!:!!||||||! !||||||:!:.. laIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSe 237430 : CGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAG : 237486 231 : uValLeuAlaSerArgLeuGluAspLeuSerHisGlyGlnAsnPheGlyProSerLeu : 249 .|||:!! !! ! !:!!||||||!!! ! !! ! !!.. ! !! !!.! ! rValValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAsp 237487 : CGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGAC : 237543 250 : AspValAsnGlnArgIleAlaAlaIleValGluSerHisValArgIleLeuArg : 267 ||| ! !.!...!||| !!.!!|||||||||..!|||:!!|||:!:|||!:! AspHisPheAspGluIleProThrIleValGluGluHisLeuArgValLeuLys 237544 : GATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAG : 237599 vulgar: CbirOr35 21 267 . KQ414889.1 236852 237599 + 232 M 117 351 G 1 0 M 25 75 G 0 6 M 8 24 G 0 6 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236853 237599 232 + . gene_id 19 ; sequence CbirOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236853 237599 . + . KQ414889.1 exonerate:protein2genome:local exon 236853 237599 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 236853 237599 232 + . alignment_id 19 ; Query CbirOr35 ; Align 236853 22 351 ; Align 237204 140 75 ; Align 237285 165 24 ; Align 237315 173 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 227 Query range: 300 -> 390 Target range: 277371 -> 277713 301 : AspTrpGlnAspSerAspThrValGlyLeuThrThrTyrPheLeuLeuPheValSerP : 320 !!:|||...|||||||||..! ! !:!!||||||:!!|||:!!:!!.!!:!!|||. GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 321 : heCysPheAsnMetTyrIleLeuCysTyrIleGlyGluLeuIleValGluLys >>> : 338 !.|||||||||:::::: !:!!|||||||||||||||:!!:!!..!|||:!! etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 339 : > Target Intron 1 >>>> SerSerGlnIleGlyLeuMetCysPheMetIleA : 349 72 bp !!!!.!:!!:!!||| !:!! !!:!|||! : ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 350 : spTrpTyrGlnLeuProAlaLysSerValArgSerLeuValLeuMetIleAlaMetSe : 368 !!|||||| ! ||||||! !|||..!:!!! !!:!|||:!!|||!!:|||:!!! || snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 369 : rSerGlnProIleLysIleSerAlaGlyArgMetIleAspIleSerLeuAlaThrPhe : 387 |||| |||||||||:::||||||::::::|||...:::|||:!! !|||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 388 : GlyAsnVal : 390 |||:!!||| GlyAspVal 277703 : GGCGATGTA : 277713 vulgar: CbirOr35 300 390 . KQ414889.1 277371 277713 + 227 M 37 111 5 0 2 I 0 68 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277713 227 + . gene_id 20 ; sequence CbirOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277713 227 + . alignment_id 20 ; Query CbirOr35 ; Align 277372 301 111 ; Align 277555 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 226 Query range: 300 -> 390 Target range: 224323 -> 224658 301 : AspTrpGlnAspSerAspThrValGlyLeuThrThrTyrPheLeuLeuPheValSerP : 320 :::|||......||| !! !..!.!! !..!|||||||||:!!|||.!!:!!|||. GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 321 : heCysPheAsnMetTyrIleLeuCysTyrIleGlyGluLeuIleValGluLys >>> : 338 .. ||||||::::::|||...||||||||||||||||||:!!!.!|||::: euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln++ 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggt... : 224437 339 : > Target Intron 1 >>>> SerSerGlnIleGlyLeuMetCysPheMetIleA : 349 65 bp ...:::|||||| !:!!! !:!||||||| ++CysGluLysIleGlyGlnValSerTyrMetIleA 224438 : ......................agtgtgaaaaaattggacaAGTGTCGTACATGATCG : 224533 350 : spTrpTyrGlnLeuProAlaLysSerValArgSerLeuValLeuMetIleAlaMetSe : 368 ||||||||!:!||| !!!.!!!.!.! !! !!!!! !:!!|||!!:||||||||||| spTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 224534 : ACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGATGTC : 224590 369 : rSerGlnProIleLysIleSerAlaGlyArgMetIleAspIleSerLeuAlaThrPhe : 387 |!:!... !!||||||:!:!!!||||||!.!|||:!!!!::!:!!!|||.!!|||||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThrPhe 224591 : CAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACTTTC : 224647 388 : GlyAsnVal : 390 |||:!!||| GlyAspVal 224648 : GGTGACGTA : 224658 vulgar: CbirOr35 300 390 . KQ414889.1 224323 224658 + 226 M 37 111 5 0 2 I 0 61 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224658 226 + . gene_id 21 ; sequence CbirOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224658 226 + . alignment_id 21 ; Query CbirOr35 ; Align 224324 301 111 ; Align 224500 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 210 Query range: 300 -> 390 Target range: 206050 -> 206401 301 : AspTrpGlnAspSerAspThrValGlyLeuThrThrTyrPheLeuLeuPheValSerP : 320 !!:|||:!!:!!!:!:!!|||..!!.!:!!! !..!|||.!! !||| :!!|||! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 321 : heCysPheAsnMetTyrIleLeuCysTyrIleGlyGluLeuIleValGluLys >>> : 338 ! ||| !:!:!:!||||||||||||||||||:!!|||:!!:!!!!::!! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 339 : > Target Intron 1 >>>> SerSerGlnIleGlyLeuMetCysPheMetIleA : 349 81 bp !:! ! :!:||||||! ! !! !! !:!:: ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 350 : spTrpTyrGlnLeuProAlaLysSerValArgSerLeuValLeuMetIleAlaMetSe : 368 !!||||||!::|||||| !!:! !!.!||||||:!!:!!|||!!:||||||||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 369 : rSerGlnProIleLysIleSerAlaGlyArgMetIleAspIleSerLeuAlaThrPhe : 387 |!:! ! |||||||||:!!!!!||||||!:!|||.!!!!:!!:|||||||||!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 388 : GlyAsnVal : 390 !:!!||| ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: CbirOr35 300 390 . KQ414889.1 206050 206401 + 210 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 210 + . gene_id 22 ; sequence CbirOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 210 + . alignment_id 22 ; Query CbirOr35 ; Align 206051 301 111 ; Align 206243 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 202 Query range: 16 -> 196 Target range: 294672 -> 295227 17 : GlnGluAspMetArgTyrIlePheLysProSerSerTrpIleLeuGlySerIleGlyI : 36 ::!.!.|||:!! ! !!! !.!!||| !!!! !! !!:!:||| ! !!||||||: ArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyL 294673 : AGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTC : 294730 37 : leTrpProLeuThrIleCysGlyAlaGlyHisHisValSerLysIleAlaIleValIl : 55 !!|||||||||! ! ! !! !.!!.!! ! ! !!.! :!!:!!|||:!!:! euTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLe 294731 : TTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCT : 294787 56 : e<-><-><->CysAsnPheAlaLeuSerPheAlaIleValProCysIleLeuHisIle : 71 : |||!..!!..!!:!! !|||!.!:!!||||||||| !! ! ! ! uIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCys 294788 : GATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGT : 294844 72 : IleTyrAspGluLysAsnLeuAsnIleArgLeuLysLeuSerGlyLeuLeuGlyPheC : 91 :!!!:! !!! ||||||:::...:::::!:!!|||||| !|||! !:!! !!:!! ValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrS 294845 : GTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACT : 294904 92 : ysIleThrAlaMetMetLysTyrCysValLeuThrIleArgArgProAspIleGlnAr : 110 !!!: !:!!|||:!:!:!||| !! !|||..!:!:!:!! !|||! .!!:!!!. erMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHi 294905 : CTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCA : 294961 111 : gCysIleGluHisValLysSerAspTrpTrpGlnValLysPheSerSerAspArgGlu : 129 !||||||||| !!:!!:!!!:!|||||| ! !:!! ! ! !!..! !!|||! ! sCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAla 294962 : TTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCG : 295018 130 : LeuMetLeuLysTyrAlaGlyThrSerArgArgLeuSerThrIleSerValSerSerM : 149 :!!|||:!!||| !!||| !..!!!!!:!|||:!!!!!..! !! !..!! !! !! IleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleI 295019 : ATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAA : 295078 150 : etTyrIleAlaGlyPheIleTyrHisLeuIleLeuProPheCysAsn<-><->ValHi : 166 !:|||! !:!!!.! ! |||||| !|||:::|||||| ::: :!!.! leTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGl 295079 : TCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGA : 295135 167 : sLysIleAspAsnGlnThrIleArgProLeuValTyrProThrTyrSerGluPheHis : 185 .!!.! ! |||.!.||||||||| !!||| ! !||| !|||..! !||| uAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheVal 295136 : GAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTA : 295192 186 : GlnSerGlnIleSerProIleTyrGluLeuVal : 196 .!.:!! ! !||||||! !||||||:!!:!! AspAlaTyrSerSerProThrTyrGluIleIle 295193 : GACGCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: CbirOr35 16 196 . KQ414889.1 294672 295227 + 202 M 39 117 G 0 9 M 109 327 G 0 6 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294673 295227 202 + . gene_id 23 ; sequence CbirOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294673 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294673 295227 . + . insertions 15 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294673 295227 202 + . alignment_id 23 ; Query CbirOr35 ; Align 294673 17 117 ; Align 294799 56 327 ; Align 295132 165 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 201 Query range: 296 -> 393 Target range: 210651 -> 211941 297 : TyrCysIleValAspTrpGlnAspSerAspThrValGlyLeuThrThrTyrPheLeuL : 316 !:! !:!! !!!:|||.!...!!.!||| !!:!!.!! ! !||||||.!.:!!| PheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValL 210652 : TTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTAC : 210709 317 : euPheValSerPheCysPheAsnMetTyrIleLeuCysTyrIleGlyGluLeuIleVa : 335 ||.!!..!||| !! ||||||!!:!:!|||!!!|||||||||||||||:!!:!:!. euLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAl 210710 : TCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGC : 210766 336 : lGluLys >>>> Target Intron 1 >>>> SerSerGlnIleGlyLeuMetC : 345 !|||:!: 999 bp !!! !:!!:!!||| !! !! aGluGln++ ++ThrValLysValGlyGluLysS 210767 : TGAACAggt.........................agACAGTAAAAGTTGGAGAAAAGT : 211795 346 : ysPheMetIleAspTrpTyrGlnLeuProAlaLysSerValArgSerLeuValLeuMe : 364 !!:!|||||||||||||||!:!:!!|||!.!|||!.!! ! ! !:!! !||||| erTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValValProLeuMe 211796 : CTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGAT : 211852 365 : tIleAlaMetSerSerGlnProIleLysIleSerAlaGlyArgMetIleAspIleSer : 383 ||||:!!|||||| !..! !!! !||||||!!!||||||!.!:!:|||! !:!!||| tIleSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleValLeuSer 211853 : GATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTTCTTTCA : 211909 384 : LeuAlaThrPheGlyAsnValLeuLysThr : 393 :!!::!!:!||||||:!!||| ||| IleSerSerPheGlyAspValSerValThr 211910 : ATCAGTAGTTTCGGTGACGTAAGtgttaca : 211941 vulgar: CbirOr35 296 393 . KQ414889.1 210651 211941 + 201 M 41 123 5 0 2 I 0 995 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210652 211941 201 + . gene_id 24 ; sequence CbirOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 210652 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210652 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211941 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211941 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210652 211941 201 + . alignment_id 24 ; Query CbirOr35 ; Align 210652 297 123 ; Align 211774 338 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 196 Query range: 276 -> 397 Target range: 280019 -> 280456 277 : GlnGluLeuCysLeuLeuGluPheAlaSerSerValPheThrMetCysLeuProGluT : 296 .!.!!:||||||! !!!!.!..!!!.!! !:!! !.!!.!!.!. !:!! !..!! AspAspLeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerL 280020 : GACGACTTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGT : 280077 297 : yrTyrCysIleValAspTrpGlnAspSerAspThrValGlyLeuThrThrTyrPheLe : 315 ! !.!! !!!:|||:!!.!.!:!|||.!!:!!||| ! !||||||!!.:! euSerValPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMe 280078 : TGTCAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAAT : 280134 316 : uLeuPheValSerPheCysPheAsnMetTyrIleLeuCysTyrIleGlyGluLeuIle : 334 !!!!.!!:!!|||!!. ||||||:!:!:!|||||||||||||||||||||:!!:!! tPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeu 280135 : GTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTC : 280191 335 : ValGluLysSerSerGlnIleGlyLeuMetCysPhe{Me} >>>> Target Intr : 347 !|||::: |||... ! !!:!{ } 74 bp SerGluGlnValPhePheIleSerSerThrIleTyr{**}-+ 280192 : TCCGAACaggtatttttcatttcttcaacGATCTAT{TA}tt................ : 280234 348 : on 1 >>>> {t}IleAspTrpTyrGlnLeuProAlaLysSerValArgSerLeuVa : 362 {!}||||||||||||!::||||||!.!|||!.!!.!!:!.!!|||:! +-{*}IleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIl 280235 : .........at{G}ATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGAT : 280349 363 : lLeuMetIleAlaMetSerSerGlnProIleLysIleSerAlaGlyArgMetIleAsp : 381 !|||!!:.!!|||:!!|||!:!... !!||||||:!!!!!||||||!:!!!:|||||| eLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAsp 280350 : ACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGAT : 280406 382 : IleSerLeuAlaThrPheGlyAsnValLeuLysThrSerLeuAlaTyr : 397 :!!||||||::!!:!||| !!!:!||| !! ! !!:!|||:!!||| LeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 280407 : CTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 280456 vulgar: CbirOr35 276 397 . KQ414889.1 280019 280456 + 196 M 70 210 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280020 280456 196 + . gene_id 25 ; sequence CbirOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280020 280231 . + . KQ414889.1 exonerate:protein2genome:local exon 280020 280231 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280232 280233 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 280232 280305 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280304 280305 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 280306 280456 . + . KQ414889.1 exonerate:protein2genome:local exon 280306 280456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280020 280456 196 + . alignment_id 25 ; Query CbirOr35 ; Align 280020 277 210 ; Align 280307 348 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 12 -> 118 Target range: 299662 -> 299989 13 : AsnValSerTyrGlnGluAspMetArgTyrIlePheLysProSerSerTrpIleLeuG : 32 ||| ! !||||||.!.|||!!:!.!|||! .!.:!! !!!!..!|||:!:||| AsnTyrHisTyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuL 299663 : AATTACCATTACCAAAATGACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGA : 299720 33 : lySerIleGlyIleTrpProLeuThrIleCysGlyAlaGly<-><-><->HisHisVa : 48 ! !!||||||:!!|||! !||| ! ! !!:!!.!! |||! !|| ysProIleGlyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuVa 299721 : AACCTATCGGAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGT : 299777 49 : lSerLysIleAlaIleValIleCysAsnPheAlaLeuSerPheAlaIleValProCys : 67 ||||! :!! !!!:..!|||||| !! !::!|||! !||| !:!!:!!|||! ! lSerIleValLeuMetThrIleCysPheSerSerLeuPhePheIleValLeuProSer 299778 : CTCGATCGTTCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCC : 299834 68 : IleLeuHisIleIleTyrAspGluLysAsnLeuAsnIleArgLeuLysLeuSerGlyL : 87 !! !:!!|||.!!!:!! ||||||!:!:!!:!!:!!!:!:!!|||:!!! !|||! GlyHisTyrIlePhePheAlaGluLysSerIleHisValLysValLysValPheGlyP 299835 : GGTCATTACATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTC : 299894 88 : euLeuGlyPheCysIleThrAlaMetMetLysTyrCysValLeuThrIleArgArgPr : 106 !:!!|||||||||:!!:!!:!!!!::!:||||||||| !||| !:!:!.! !! roValGlyPheCysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGl 299895 : CGGTTGGTTTTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGG : 299951 107 : oAspIleGlnArgCysIleGluHisValLysSerAsp : 118 !! .!!:!!|||||||||:!!||||||:!!!!!||| yAlaPheGluArgCysIleGlnHisValGluArgAsp 299952 : CGCGTTCGAACGATGCATCCAACACGTCGAGAGAGAC : 299989 vulgar: CbirOr35 12 118 . KQ414889.1 299662 299989 + 178 M 33 99 G 0 9 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299663 299989 178 + . gene_id 26 ; sequence CbirOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299663 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299663 299989 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299663 299989 178 + . alignment_id 26 ; Query CbirOr35 ; Align 299663 13 99 ; Align 299771 46 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 294 -> 395 Target range: 297442 -> 297818 295 : GluTyrTyrCysIleValAspTrpGlnAspSerAspThrValGlyLeuThrThrTyrP : 314 :::|||::: ... |||:!! ! !|||! !:!! ! !..!||| ! LysTyrHisPhePheGlnGlyTrpLysThrHisAspMetIlePheGlyValThrIleG 297443 : aaatatcatttttttcaggGATGGAAAACTCACGATATGATTTTTGGGGTAACGATCG : 297500 315 : heLeuLeuPheValSerPheCysPheAsnMetTyrIleLeuCysTyrIleGlyGluLe : 333 ! !!!!.!.:!!|||.!! !||||||!!:!:!:!!||||||:!! !|||||||| lyGlyPheMetLeuSerIleThrPheAsnIlePheValLeuCysHisAlaGlyGluLe 297501 : GCGGTTTCATGCTTTCGATCACTTTTAATATATTCGTATTATGTCATGCAGGTGAACT : 297557 334 : uIleValGluLysSerSerGlnIleGlyLeu{M} >>>> Target Intron 1 > : 344 |:!!||||||:!! ! !!:!!:!: !|||{ } 76 bp uLeuValGluGluValProLysValPheLeu{S}++ 297558 : TCTTGTCGAGGAGGTACCGAAAGTGTTTCTA{T}gt...................... : 297593 345 : >>> {et}CysPheMetIleAspTrpTyrGlnLeuProAlaLysSerValArgSerL : 361 { } !:!! |||!!:||||||.!.|||||| !!!!.!!!!.!! !..!| ++{er}---TyrAsnIleGluTrpTyrAsnLeuProProAsnArgAlaLeuAspL 297594 : ...ag{CT}---TATAACATCGAATGGTACAACTTACCGCCAAACAGGGCTCTCGATC : 297714 362 : euValLeuMetIleAlaMetSerSerGlnProIleLysIleSerAlaGlyArgMetIl : 380 ||||||||||||||!.!!!::!!!.! ||| !:!:!!!!!...|||::::::.. euValLeuMetIleGlyIleAlaLysPheProProArgLeuThrGlyGlyLysIlePh 297715 : TGGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCACAggtggaaaaatatt : 297771 381 : eAspIleSerLeuAlaThrPheGlyAsnValLeuLysThrSerLeu : 395 .|||||||||:!! !||||||.!! !|||! !!:: |||||| eAspIleSerIleAsnThrPheSerAlaValArgArgGlnSerLeu 297772 : cgatatatCGATAAACACGTTCAGTGCCGTACGTAgacaaagttta : 297818 vulgar: CbirOr35 294 395 . KQ414889.1 297442 297818 + 135 M 49 147 S 0 1 5 0 2 I 0 72 3 0 2 S 1 2 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297443 297818 135 + . gene_id 27 ; sequence CbirOr35 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 297443 297590 . + . KQ414889.1 exonerate:protein2genome:local exon 297443 297590 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 297591 297592 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 297591 297666 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 297665 297666 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 297667 297818 . + . KQ414889.1 exonerate:protein2genome:local exon 297667 297818 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 297443 297818 135 + . alignment_id 27 ; Query CbirOr35 ; Align 297443 295 147 ; Align 297669 346 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 295 -> 337 Target range: 261718 -> 261844 296 : TyrTyrCysIleValAspTrpGlnAspSerAspThrValGlyLeuThrThrTyrPheL : 315 :::::: ::: !!:||| !!:..!|||! ! !..!|||:!!|||||||||: PhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheM 261719 : ttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCA : 261776 316 : euLeuPheValSerPheCysPheAsnMetTyrIleLeuCysTyrIleGlyGluLeuIl : 334 !!:!!.!.:!!:!!.!!|||||||||:!:!:!|||:!!|||||||||||||||:!!:! etMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLe 261777 : TGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACT : 261833 335 : eValGluLys : 337 !..!|||:!! uThrGluGln 261834 : AACGGAACAG : 261844 vulgar: CbirOr35 295 337 . KQ414889.1 261718 261844 + 125 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261719 261844 125 + . gene_id 28 ; sequence CbirOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 261719 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261719 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 261719 261844 125 + . alignment_id 28 ; Query CbirOr35 ; Align 261719 296 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 336 -> 390 Target range: 273014 -> 273176 337 : LysSerSerGlnIleGlyLeuMetCysPheMetIleAspTrpTyrGlnLeuProAlaL : 356 ::: ...:::|||||| !:!: !!:!|||! :!!|||||| ! ||||||!.!| GlnCysLysLysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProGlyL 273015 : cagtgtaaaaaaattggcGAGGTAGTTTACATGACGAACTGGTACTATTTACCCGGCA : 273072 357 : ysSerValArgSerLeuValLeuMetIleAlaMetSerSerGlnProIleLysIleSe : 375 ||..!:!!! !..!|||:!!|||!!:|||:!!! !!!||| !|||||||||!! ysAspIleLeuAspLeuIleLeuIleIleSerArgCysSerValValIleLysIleTh 273073 : AAGATATCCTCGATCTGATTTTGATCATCTCAAGATGCAGTGTTGTGATTAAAATCAC : 273129 376 : rAlaGlyArgMetIleAspIleSerLeuAlaThrPheGlyAsnVal : 390 !|||||||||!!::!! !!!:|||:!! !|||||||||:!!||| rAlaGlyArgIleValProMetSerValTyrThrPheGlyAspVal 273130 : CGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTCGGCGATGTA : 273176 vulgar: CbirOr35 336 390 . KQ414889.1 273014 273176 + 123 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 273015 273176 123 + . gene_id 29 ; sequence CbirOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 273015 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 273015 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 273015 273176 123 + . alignment_id 29 ; Query CbirOr35 ; Align 273015 337 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 300 -> 340 Target range: 272836 -> 272956 301 : AspTrpGlnAspSerAspThrValGlyLeuThrThrTyrPheLeuLeuPheValSerP : 320 :!:||| ||| !||| ! !.!!|||||||||||||||:!!:!!.!!:!!|||. GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 321 : heCysPheAsnMetTyrIleLeuCysTyrIleGlyGluLeuIleValGluLysSerSe : 339 !. ||||||::::::|||::!|||||||||||||||:!!:!!..!|||!:! !! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArgValMe 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGGTAAT : 272951 340 : rGln : 340 ||| tGln 272952 : gcaa : 272956 vulgar: CbirOr35 300 340 . KQ414889.1 272836 272956 + 121 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 272956 121 + . gene_id 30 ; sequence CbirOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272837 272956 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272956 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 272956 121 + . alignment_id 30 ; Query CbirOr35 ; Align 272837 301 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 300 -> 337 Target range: 264537 -> 264648 301 : AspTrpGlnAspSerAspThrValGlyLeuThrThrTyrPheLeuLeuPheValSerP : 320 !!:|||:!!..! ||| ...|||||||||||||||:!!:!!.!.:!!|||. GluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerM 264538 : GAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATACTGATATCAA : 264595 321 : heCysPheAsnMetTyrIleLeuCysTyrIleGlyGluLeuIleValGluLys : 337 !.||| !|||!!:!:!:!!:!!|||||||||||||||:!!:!:..!|||::: etCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGln 264596 : TGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcag : 264648 vulgar: CbirOr35 300 337 . KQ414889.1 264537 264648 + 116 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264538 264648 116 + . gene_id 31 ; sequence CbirOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264538 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264538 264648 116 + . alignment_id 31 ; Query CbirOr35 ; Align 264538 301 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 300 -> 339 Target range: 291368 -> 291485 301 : AspTrpGlnAspSerAspThrValGlyLeuThrThrTyrPheLeuLeuPheValSerP : 320 !!:|||:!!..!||||||:!!:!!|||:!! !|||||| !! !|||.!!..!|||| GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 321 : heCysPheAsnMetTyrIleLeuCysTyrIleGlyGluLeuIleValGluLysSerSe : 339 || !||||||!!: |||!!!||||||:!!|||||||||:!!:!!! !:!! !|| heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGlnValSe 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAGGTAAG : 291483 340 : r : 339 | r 291484 : T : 291485 vulgar: CbirOr35 300 339 . KQ414889.1 291368 291485 + 113 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 291485 113 + . gene_id 32 ; sequence CbirOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 291369 291485 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291485 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 291485 113 + . alignment_id 32 ; Query CbirOr35 ; Align 291369 301 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 300 -> 337 Target range: 219328 -> 219439 301 : AspTrpGlnAspSerAspThrValGlyLeuThrThrTyrPheLeuLeuPheValSerP : 320 !!:|||:!!...!:!|||..!..!.!! !..!||||||.!!:!!|||.!!:!!|||. GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 321 : heCysPheAsnMetTyrIleLeuCysTyrIleGlyGluLeuIleValGluLys : 337 !. ||||||::::::|||...|||||||||||||||:!!:!!!.!|||:!: euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: CbirOr35 300 337 . KQ414889.1 219328 219439 + 106 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219439 106 + . gene_id 33 ; sequence CbirOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219439 106 + . alignment_id 33 ; Query CbirOr35 ; Align 219329 301 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 331 -> 390 Target range: 196633 -> 196810 332 : GluLeuIleValGluLysSerSerGlnIleGlyLeuMetCysPheMetIleAspTrpT : 351 :::|||.!!||||||||||||..!::!:!!||| !! !! !:!.!.!!: |||| AspLeuPheValGluLysSerGluArgValGlyGluThrSerTyrPheMetProTrpT 196634 : gaTTTATTCGTTGAAAAGAGCGAAAGAGTAGGCGAAACGTCGTACTTCATGCCGTGGT : 196691 352 : yrGlnLeuProAlaLysSerValArgSerLeuValLeuMetIleAlaMetSerSerGl : 370 ||.!.||||||! ! ! ! !!.!!:!!:!:!! ! !!!:||| !! :!!|||!! yrAspLeuProAspAspLeuAlaLysAsnIleArgThrIleIleLeuArgAlaSerHi 196692 : ACGATCTTCCGGACGATTTAGCCAAGAATATAAGAACGATCATACTAAGAGCCAGTCA : 196748 371 : nProIleLysIleSerAlaGlyArgMetIleAspIleSerLeuAlaThrPheGlyAsn : 389 .||| !!..:!:|||!.!!.!!:!:!!.!!|||:!!|||||| !.!!||| !!:!! sProSerSerLeuSerGlyAlaLysLeuPheAspLeuSerLeuGlnAlaPheCysAsp 196749 : TCCGTCAAGTTTGTCTGGCGCCAAGTTGTTCGATCTTTCGCTTCAAGCATTTTGCGAC : 196805 390 : Val : 390 ||| Val 196806 : GTG : 196810 vulgar: CbirOr35 331 390 . KQ414889.1 196633 196810 + 103 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 196634 196810 103 + . gene_id 34 ; sequence CbirOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 196634 196810 . + . KQ414889.1 exonerate:protein2genome:local exon 196634 196810 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 196634 196810 103 + . alignment_id 34 ; Query CbirOr35 ; Align 196634 332 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 339 -> 390 Target range: 230253 -> 230406 340 : GlnIleGlyLeuMetCysPheMetIleAspTrpTyrGlnLeuProAlaLysSerValA : 359 :!!:!!||| !! !! !:!||||||!!:||||||!:!||| !!!.!!!.!.! !! LysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyAsnLysLysL 230254 : AAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAAACAAGAAGC : 230311 360 : rgSerLeuValLeuMetIleAlaMetSerSerGlnProIleLysIleSerAlaGlyAr : 378 !!!!! !:!!|||!!:||||||||||||!:! !!! |||.!!!!!||||||!. euCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheThrAlaGlyAs 230312 : TCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTACAGCAGGAAA : 230368 379 : gMetIleAspIleSerLeuAlaThrPheGlyAsnVal : 390 !|||:!!!!::!!|||:!! !||||||.!!:!!||| nMetValGluLeuSerValAsnThrPheSerAspVal 230369 : CATGGTTGAATTATCCGTAAACACTTTCAGCGACGTA : 230406 vulgar: CbirOr35 339 390 . KQ414889.1 230253 230406 + 103 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230254 230406 103 + . gene_id 35 ; sequence CbirOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230254 230406 . + . KQ414889.1 exonerate:protein2genome:local exon 230254 230406 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230254 230406 103 + . alignment_id 35 ; Query CbirOr35 ; Align 230254 340 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1012 Query range: 11 -> 407 Target range: 303166 -> 305937 12 : GlnAsnSerAsnTyrGlnArgAspIleArgTyrAlaPheLysLeuAsnSerTrpIleL : 31 !:!|||! !||||||:!!!:!|||||| !|||!.! |||! !!:!!.!||||||| ArgAsnLeuAsnTyrLysLysAspIleValTyrValThrLysHisSerLysTrpIleL 303167 : CGGAATTTGAATTACAAGAAAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCC : 303224 32 : euGlySerLeuGlyIleTrpProLeuThrIleArgAsnIleGlyGlnTyrValSerAs : 50 || !|||||||||||||||||| !..!:!: !.!.! !!.! !!:!:!! !!!! euLysSerLeuGlyIleTrpProAlaValLeuAspGluThrAlaGlyPheLeuProLy 303225 : TGAAGTCCCTTGGTATTTGGCCAGCCGTGTTGGACGAAACCGCAGGATTCCTACCAAA : 303281 51 : nIleThrIleValPheTyrAsnPheSerPheValPheAlaIleValProPheThrLeu : 69 .|||||||||! !.!! !|||!!. !.!.:!!|||.!!:!::!!|||! !! !||| sIleThrIleGlyLeuSerAsnLeuValLeuLeuPheThrValIleProCysIleLeu 303282 : AATCACCATTGGACTCAGTAATTTGGTTCTATTATTCACCGTGATACCGTGTATTCTA : 303338 70 : TyrIleMetTyrAspAlaLysAspIleAsnAlaLysLeuArgSerCysGlyLeuLeuA : 89 :!!|||!!:!:!!!: !||||||! ! !!:!|||!:! !! !|||||||||: HisIleIlePheGluGlnLysAspThrIleIleArgLeuLysLeuPheGlyLeuLeuS 303339 : CACATAATATTCGAACAAAAGGATACGATAATAAGATTGAAACTATTCGGTCTGCTGA : 303398 90 : laPheCysLeuThrAlaMetIleLysTyrLeuIleLeuAlaIleArgArgProLysIl : 108 :!|||||||||! !:!!:!!!!:||||||! ! !||||||! |||!:!|||!:!|| erPheCysLeuIleSerLeuMetLysTyrTrpAlaLeuAlaThrArgLysProArgIl 303399 : GTTTCTGTTTGATCTCGTTGATGAAGTATTGGGCCCTCGCCACGCGGAAACCAAGGAT : 303455 109 : eGlnLeuCysIleGluTyrIleLysTyrAspTrpTrpGln >>>> Target Intr : 122 |:!! !||||||||| ! :!::!! !|||||| :!! 938 bp eLysGluCysIleGluGluValGlnSerAspTrpLysGlu++ 303456 : CAAAGAATGTATAGAAGAGGTGCAAAGTGATTGGAAAGAGgt................ : 303499 123 : on 1 >>>> ValThrPheValSerAspArgGluMetMetLeuLysTyrAlaValTh : 137 ||| !! !:!!!!!||||||||||||||||||||||||!.! !! ++ValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMe 303500 : .........agGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAAT : 304480 138 : rGlyArgAsnLeuThrIleIleGlyAlaLeuPheMetTyrGlyAlaGlyIleIleTyr : 156 !||||||||||||||||||||| !!|||:!!||||||||| !!.!|||! !|||||| tGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIleTyr 304481 : GGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATTTAT : 304537 157 : TyrAlaIleLeu<->IleProIleAsnThrIleLysIleIleThrAsnGlnThrLeuA : 175 :!!.!!:!!:!! .!! !!! !...||| ! ! ! !|||!::|||:!!! HisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgThrIleL 304538 : CACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTACGATTA : 304597 176 : rgProValValTyrProIleTyrSerGlnPheGlyAspValGlnAsnSerProLysTy : 194 :!|||:!!|||||||||! !|||||| !!. !|||||||||!..||||||! || ysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIleTy 304598 : AACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTA : 304654 195 : rGluIleValTyrAlaValHisCysValCysGlyTyrThrMetTyrThrValThrThr : 213 ||||:!:|||||| !|||||||||:!!|||||||||..!!!:|||:!!:!!|||.!! rGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThrAla 304655 : CGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGCT : 304711 214 : GlyThrCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGlnIleGlnMetI : 233 |||.!!|||||||||||||||||||||!.!|||||||||||||||||||||.!.!!:: GlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleV 304712 : GGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCG : 304771 234 : leValSerArgLeuGlnAsnLeuLeuAspAspLysAsnLeuGluGlnThrGlnAsnIl : 252 !!:!!||||||||| :!!|||:!!:!!..!||| :!!:!!...:!!:! alMetSerArgLeuGlyAspLeuValAsnSerLys---------GluSerSerAspLe 304772 : TTATGTCTCGATTGGGTGATCTTGTCAACAGCAAA---------GAATCATCTGATTT : 304819 253 : eHisGlnArgIleValAlaIleValLysArgHisValArgValGln{Ar} >>>> T : 268 ! !!:!!|||:!!:!!! !||||||:!!!.!|||:!!|||:!! !{||} uAspLysArgLeuIleGluIleValGluHisHisLeuArgIleLeu{Ar}++ 304820 : AGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTA{AG}gt...... : 304871 269 : arget Intron 2 >>>> {g}PheAlaAlaValValGluGluMetLeuGlnGluV : 280 70 bp {|}|||:!!|||:!!|||:!! !:!!|||||||||| ++{g}PheSerAlaIleValGlnThrValLeuGlnGluV 304872 : ...................ag{A}TTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAG : 304973 281 : alCysLeuValGluPheAlaSerSerValCysThrIleCysLeuLeuGluTyrTyrCy : 299 |||||!!!:!!|||||| !.!!|||..!! !||||||||||||||||||||||| alCysPheLeuGluPheIleGlySerThrLeuLeuIleCysLeuLeuGluTyrTyrCy 304974 : TATGCTTCTTGGAATTCATTGGTTCTACCTTACTGATATGTCTACTTGAATACTACTG : 305030 300 : sIleLeu >>>> Target Intron 3 >>>> AspTrpGlnLysAsnAspLysV : 309 |||| ! 62 bp ||||||:!!!..!:!:!!! | sIleThr++ ++AspTrpGluSerSerAsnThrV 305031 : TATAACGgt.........................agGATTGGGAGAGCAGTAATACCG : 305122 310 : alGlyValValSerTyrSerLeuLeuPheValSerPheCysPheAsnValTyrIleLe : 328 ||.!!:!!..!!!!|||!!!:!!|||.!.:!!||| ! ||||||:!!!:!||||| alSerLeuThrThrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLe 305123 : TTAGTCTTACAACATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATT : 305179 329 : uCysHisIleGlyGluLeuLeuMetGluLys >>>> Target Intron 4 >>>> : 339 ||||:!!|||||||||:!!|||||||||||| 413 bp uCysTyrIleGlyGluIleLeuMetGluLys++ 305180 : ATGCTACATTGGTGAGATTCTTATGGAAAAGgt......................... : 305214 340 : SerSerGlnIleGlySerValCysTyrMetIleAsnTrpTyrGlnIleSerProLy : 357 ||||||...:!!|||! ! !|||!:!||||||!:!||||||!!.:!! !! !!|| ++SerSerSerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLy 305215 : agAGCAGTAGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAA : 305679 358 : sLeuValArgSerIleIleMetIleIleAlaMetSerSerHisProThrLysLeuThr : 376 | !:!!!.!.!!:!!|||:!:||||||||||||||||||:!!|||.!!|||:!!!:! sThrIleHisGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSer 305680 : GACGATACATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGT : 305736 377 : AlaGlyGlyMetValAspLeuSerLeuSerThrPheGlyAsn >>>> Target In : 391 |||||| !:!:|||||||||||||||||||||||||||||| 106 AlaGlyLysValValAspLeuSerLeuSerThrPheGlyAsn++ 305737 : GCTGGTAAAGTAGTTGATTTATCTTTATCCACATTTGGAAACgt.............. : 305783 392 : tron 5 >>>> ValMetLysThrSerIleAlaTyrLeuSerPheLeuArgThrLeu : 405 bp |||:!!|||||||||:!!|||||||||||||||||||||||| ! ++ValLeuLysThrSerLeuAlaTyrLeuSerPheLeuArgThrThr 305784 : ...........agGTTCTGAAAACGTCATTAGCGTATTTAAGTTTCCTTCGGACTACC : 305929 406 : ValMet : 407 |||!!: ValIle 305930 : GTTATA : 305937 vulgar: CbirOr33 11 407 . KQ414889.1 303166 305937 + 1012 M 110 330 5 0 2 I 0 934 3 0 2 M 39 117 G 0 3 M 84 252 G 3 0 M 20 60 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 37 111 5 0 2 I 0 409 3 0 2 M 52 156 5 0 2 I 0 102 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303167 305937 1012 + . gene_id 1 ; sequence CbirOr33 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303167 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303167 303496 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304868 . + . insertions 3 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 2 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305780 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305780 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305781 305782 . + . intron_id 5 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305781 305886 . + . intron_id 5 KQ414889.1 exonerate:protein2genome:local splice3 305885 305886 . + . intron_id 4 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305887 305937 . + . KQ414889.1 exonerate:protein2genome:local exon 305887 305937 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303167 305937 1012 + . alignment_id 1 ; Query CbirOr33 ; Align 303167 12 330 ; Align 304435 122 117 ; Align 304555 161 252 ; Align 304807 248 60 ; Align 304940 269 99 ; Align 305101 302 111 ; Align 305625 339 156 ; Align 305887 391 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 635 Query range: 11 -> 399 Target range: 289705 -> 292575 12 : GlnAsnSerAsnTyrGlnArgAspIleArgTyrAlaPheLysLeuAsnSerTrpIleL : 31 ..!|||..!..!|||:!!! !||||||||||||.!!|||:!!||| ! !||||||| SerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleL 289706 : TCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCT : 289763 32 : euGlySerLeuGlyIleTrpProLeuThrIleArgAsnIleGly<-><->GlnTyrVa : 48 || ! !!:!!|||!!:!::|||!!!..!.!!!!!..! .!! :!! .. euLysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgTh 289764 : TGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAAC : 289820 49 : lSerAsnIleThrIleValPheTyrAsnPheSerPheVal<->PheAlaIleValPro : 66 !:!!::::!: !:!::!!.!. !! !|||.!!:!! ||| !||||||||| rAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValPro 289821 : GGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCG : 289877 67 : PheThrLeuTyrIleMetTyrAspAlaLysAspIleAsnAlaLysLeuArgSerCysG : 86 |||!:!! !:!!:!!:!:!:!..!! !!!.|||!!:|||.!! :!!!:!!:! !| PheSerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuG 289878 : TTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCG : 289937 87 : lyLeuLeuAlaPheCysLeuThrAlaMetIleLysTyrLeuIleLeuAlaIleArgAr : 105 ||! !|||.!!||||||||||||.!!.!..!!||||||! ! !!!!::!!!:!:! ! lyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGl 289938 : GACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGG : 289994 106 : gProLysIleGlnLeuCysIleGluTyrIleLysTyrAspTrpTrpGlnValThrPhe : 124 ! !! !||| ! !|||:!::!!:!!|||:!! |||||| !..!:!! ! ! ySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAsp 289995 : TTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGAC : 290051 125 : ValSerAspArgGluMetMetLeuLysTyrAlaValThrGlyArgAsnLeuThrIleI : 144 ! !..! !!|||! !!:||||||!:!|||!.!..!! !.!!|||||||||! !! !: GluAspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysL 290052 : GAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAAC : 290111 145 : leGlyAlaLeuPheMetTyrGlyAlaGlyIleIleTyrTyrAlaIleLeuIleProIl : 163 !: !!|||:!!|||:!!||| !!.!|||:!: !||| !!.!!:!!:!! !.! euCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPh 290112 : TGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTT : 290168 164 : eAsnThrIleLysIleIleThrAsnGlnThrLeuArgProValValTyrProIleTyr : 182 !:::! !! !..:!:! ! !||| !|||:!!||||||:!!..!|||||| !||| eSerLysLysSerValAsnGlyAsnValThrIleArgProLeuThrTyrProGlyTyr 290169 : CTCGAAGAAGAGCGTGAACGGTAACGTGACTATCAGACCTCTAACTTATCCCGGTTAC : 290225 183 : SerGlnPheGlyAspValGlnAsnSerProLysTyrGluIleValTyrAlaValHisC : 202 ..!:!!||| !|||||||||!!.|||||| !||||||||||||!:!..!:!!|||| GluGluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetHisC 290226 : GAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACT : 290285 203 : ysValCysGlyTyrThrMetTyrThrValThrThrGlyThrCysGlyLeuAlaAlaLe : 221 |||||! !! ! ! !! ! !.!:!!|||! !!.!.!!! !.!!|||.!!.!!:! ysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIl 290286 : GTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGAT : 290342 222 : uPheValThrHisAlaCysGlyGlnIleGlnMetIleValSerArgLeuGlnAsnLeu : 240 !|||!.!||||||.!!||||||||||||:!!!!: !..!!!!||||||:!!:!! ePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAsp--- 290343 : CTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGAT--- : 290399 241 : LeuAspAspLysAsnLeuGluGlnThrGlnAsnIleHisGlnArgIleValAlaIleV : 260 ||| ! !:!...:!! ! ! !:!!...:!: !.!.|||:!:!.!!.!:!!| LeuThrLysArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValValV 290400 : CTGACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTG : 290456 261 : alLysArgHisValArgValGln{Ar} >>>> Target Intron 1 >>>> {g : 268 ||!.. !!||||||..!:!! !{!:} 655 bp {! alSerGlyHisValGluIleLeu{Ly}++ ++{s 290457 : TGAGCGGTCACGTGGAGATCTTG{AA}gt.........................ag{A : 291137 269 : }PheAlaAlaValValGluGluMetLeuGlnGluValCysLeuValGluPheAlaSer : 287 }|||.!! !:!!:!!|||... !|||!!.|||:!!! !|||:!!||| ! ! ! }PheThrArgMetIleGluSerAlaLeuHisGluIlePheLeuIleGluValIleVal 291138 : }TTCACGAGGATGATCGAAAGCGCGTTGCATGAAATATTCTTGATAGAAGTAATAGTA : 291192 288 : SerValCysThrIleCysLeuLeuGluTyrTyrCysIleLeu >>>> Target In : 302 |||..! !:!!||||||:!!|||||| !! !!::!! 132 SerThrValLeuLeuCysLeuIleGluTyrLeuLeuMetMet++ 291193 : TCCACTGTGTTACTATGCTTGATCGAATATCTCTTAATGATGgt.............. : 291239 303 : tron 2 >>>> AspTrpGlnLysAsnAspLysValGlyValValSerTyrSerLeu : 316 bp !!:|||:!!!..!:!|||..!:!!|||:!!:!!!!!||| ! ! ++GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThr 291240 : ...........agGAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACT : 291411 317 : LeuPheValSerPheCysPheAsnValTyrIleLeuCysHisIleGlyGluLeuLeuM : 336 |||.!!..!|||||| !||||||:!! |||!!!|||:!!:!!||||||||||||: LeuLeuThrSerPheThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuL 291412 : CTCCTCACTTCTTTCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTC : 291471 337 : etGluLys >>>> Target Intron 3 >>>> SerSerGlnIleGlySerVal : 345 !:! !:!! 913 bp .!!|||:!!|||!.! !!.! euGlyGln++ ++GlySerGluIleAlaHisAla 291472 : TTGGACAGgt.........................agGGTAGTGAAATCGCGCACGCT : 292411 346 : CysTyrMetIleAsnTrpTyrGlnIleSerProLysLeuValArgSerIleIleMetI : 365 ! !||| ! !.!.||||||.!.:!: !! !::! !!.!|||..!|||:!!:!!: SerTyrAspThrGluTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuV 292412 : TCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGG : 292471 366 : leIleAlaMetSerSerHisProThrLysLeuThrAlaGlyGlyMetValAspLeuSe : 384 !::!!|||!!:!!!!.!||||||! !||||||||||||||| !!!: !!! !||||| alLeuAlaIleThrLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSe 292472 : TGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTC : 292528 385 : rLeuSerThrPheGlyAsnValMetLysThrSerIleAlaTyrLeu : 399 ||||!:!||||||||| !||| :!!:!!!.!:!!!.!! :!! rLeuAsnThrPheGlyAlaValArgGluSerLysLeuValLeuIle 292529 : GTTGAACACTTTTGGCGCTGTACGTGAATCAAAACTAGTCTTGATA : 292575 vulgar: CbirOr33 11 399 . KQ414889.1 289705 292575 + 635 M 34 102 G 0 6 M 16 48 G 0 3 M 178 534 G 1 0 M 27 81 S 0 2 5 0 2 I 0 651 3 0 2 S 1 1 M 33 99 5 0 2 I 0 128 3 0 2 M 37 111 5 0 2 I 0 909 3 0 2 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289706 292575 635 + . gene_id 2 ; sequence CbirOr33 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 289706 290481 . + . KQ414889.1 exonerate:protein2genome:local exon 289706 290481 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 290482 290483 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 290482 291136 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 291135 291136 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 291137 291236 . + . KQ414889.1 exonerate:protein2genome:local exon 291137 291236 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291237 291238 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291237 291368 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 291367 291368 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292575 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292575 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289706 292575 635 + . alignment_id 2 ; Query CbirOr33 ; Align 289706 12 102 ; Align 289814 46 48 ; Align 289865 62 534 ; Align 290399 241 81 ; Align 291138 269 99 ; Align 291369 302 111 ; Align 292393 339 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 395 Query range: 12 -> 266 Target range: 208185 -> 208956 13 : AsnSerAsnTyrGlnArgAspIleArgTyrAlaPheLysLeuAsnSerTrpIleLeuG : 32 |||!!!||||||:!!!.!|||:!:!!!!:! ! !!:::|||||| !|||! ||| AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 33 : lySerLeuGlyIleTrpProLeuThrIle<->ArgAsnIleGlyGlnTyrValSerAs : 50 !! !:!!||| !|||||| !:!!||| |||::! !:!! !! !..!:! ysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHi 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCA : 208300 51 : nIleThrIle<->ValPheTyrAsnPheSerPheValPheAlaIleValProPheThr : 68 !||| !:!! |||.!! !:!!! !! !.!!! !||| !:!::!!||| ! ! sIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGly 208301 : TATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGC : 208357 69 : LeuTyrIleMetTyrAspAlaLysAspIleAsnAlaLysLeuArgSerCysGlyLeuL : 88 :!!!:! !!: !! !.!:!!|||.!! !!! !:!!|||!:!! !|||.!! !| MetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaL 208358 : ATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTC : 208417 89 : euAlaPheCysLeuThrAlaMetIleLysTyrLeuIleLeuAlaIleArgArgProLy : 107 ||::!|||! !:!!! !|||.!.! ||||||:!!|||:!!.!!:!!|||..! ! ! euSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAs 208418 : TGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGA : 208474 108 : sIleGlnLeuCysIleGluTyrIleLysTyrAspTrpTrpGlnValThrPheValSer : 126 |||!:! !|||:!!||||||:!!:!! !|||||| ! .!.||| ! !! !..! pIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGlu 208475 : CATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAG : 208531 127 : AspArgGluMetMetLeuLysTyrAlaValThrGlyArgAsnLeuThrIleIleGlyA : 146 ||||||:!!!!:|||||| ! !!||| ! !!.!|||!!.|||! !:!:||| !!! AspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysG 208532 : GACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCG : 208591 147 : laLeuPheMetTyrGlyAlaGlyIleIleTyrTyrAlaIleLeuIleProIleAsnTh : 165 .! !|||||||||||| |||:::|||:::||| ||| !:!:|||:!!!.! lyAlaPheMetTyrGly---GlyValIlePheTyrTyrIleAlaLeuProLeuThrAr 208592 : GAGCTTTCATGTACGGA---GGtgtaattttctattacaTCGCTTTGCCGCTCACTCG : 208645 166 : rIleLysIleIleThr<-><-><->AsnGlnThrLeuArgProValValTyrProIle : 181 ! !|||:!!:!! ! ||| !|||! !||| !:!!|||||||||:!! gAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProVal 208646 : AGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTT : 208702 182 : TyrSerGlnPheGlyAspValGlnAsnSerProLysTyrGluIleValTyrAlaValH : 201 !!.! .!! !||||||!:! !!|||||| ! !!|||||| !!|||.!!|||! ProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValG 208703 : CCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTAC : 208762 202 : isCysValCysGlyTyrThrMetTyrThrValThrThrGlyThrCysGlyLeuAlaAl : 220 !.! :!!! |||!:!..! :!!!.!:!!|||..!|||.!!|||||||||||||| lnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAl 208763 : AATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGC : 208819 221 : aLeuPheValThrHisAlaCysGlyGlnIleGlnMetIleValSerArgLeuGlnAsn : 239 ||||.!!!.!! !|||||||||||||||:!:|||!!::!::!!||| !!:!!:!!!!. aLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLys 208820 : GCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAG : 208876 240 : LeuLeuAspAspLysAsnLeuGluGlnThrGlnAsnIleHisGlnArgIleValAlaI : 259 |||:!!|||! ::!.!. !!::!! !:!!|||:!: !!||||||:!:!.! !| LeuValAspGlyArgGlu---AspGluGluLysAsnLeuAspGlnArgLeuAlaAsnI 208877 : TTGGTCGATGGACGGGAG---GACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATA : 208933 260 : leValLysArgHisValArgVal : 266 |||||:!!!:!|||||||||||| leValGluGlnHisValArgVal 208934 : TCGTGGAGCAGCATGTTCGAGTG : 208956 vulgar: CbirOr33 12 266 . KQ414889.1 208185 208956 + 395 M 29 87 G 0 3 M 12 36 G 0 3 M 98 294 G 1 0 M 18 54 G 0 9 M 75 225 G 1 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 208956 395 + . gene_id 3 ; sequence CbirOr33 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208186 208956 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208956 . + . insertions 15 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 208186 208956 395 + . alignment_id 3 ; Query CbirOr33 ; Align 208186 13 87 ; Align 208276 42 36 ; Align 208315 54 294 ; Align 208609 153 54 ; Align 208672 171 225 ; Align 208897 247 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 385 Query range: 8 -> 273 Target range: 221339 -> 222143 9 : AlaThrSerGlnAsnSerAsnTyrGlnArgAspIleArgTyrAlaPheLysLeuAsnS : 28 :!!||| !! .!.! !:!!|||:!!! !:!!:!:!:!! ::! ! :!!|||!:! SerThrArgValGluTyrAspTyrLysThrAsnValLysLeuSerValGlnLeuSerA 221340 : TCGACTCGTGTTGAATACGATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCC : 221397 29 : erTrpIleLeuGlySerLeuGlyIleTrpPro<-><->LeuThrIleArgAsnIleGl : 45 !!||||||||| ! !!:!!|||:!!|||||| !!.!||| !!..:!!! rgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaAsnIleSerThrValGl 221398 : GTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGA : 221454 46 : yGlnTyrValSerAsnIleThrIleValPheTyrAsnPheSerPheValPheAlaIle : 64 !::!|||:!!! ! :!:! !! !||| !!! ! !! ! !.!!..!||| !:!: uArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLeuIleThrPheLeuLeu 221455 : GAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTG : 221511 65 : ValProPheThrLeuTyrIleMetTyrAspAlaLysAspIleAsnAlaLysLeuArgS : 84 ||||||! !!:!||||||:!:!!: !!!:!.!:!!|||:!! !! !!:!:!!!:!! ValProCysSerLeuTyrValIleLeuGluValGluAspValTyrAsnArgIleLysL 221512 : GTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAAT : 221571 85 : erCysGlyLeuLeuAlaPheCysLeuThrAlaMetIleLysTyrLeuIleLeuAlaIl : 103 !! |||! !|||::!||||||:!!! !|||.!.:!!||||||! !:!:||| !:! euLeuGlyProLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLe 221572 : TGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACT : 221628 104 : eArgArgProLysIleGlnLeuCysIleGluTyrIleLysTyrAspTrpTrpGlnVal : 122 ! !..! ! ! |||!:: !||||||||| !|||:!!!::|||||| !.!.:!! uTyrGluAsnAspIleArgGluCysIleGluArgIleGluTrpAspTrpLysAsnIle 221629 : TTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATC : 221685 123 : ThrPheValSerAspArgGluMetMetLeuLysTyrAlaValThrGlyArgAsnLeuT : 142 |||!:! !!.!|||!:!!!:!!:|||:!!:!! !!|||:!! !||||||...|||! ThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgLeuI 221686 : ACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGA : 221745 143 : hrIleIleGlyAlaLeuPheMetTyrGlyAlaGlyIleIleTyrTyr<->AlaIleLe : 160 !!!:||| !!.!!!!!|||||||||.!!... :::...|||||| ||||||! leMetIleCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIlePr 221746 : TCATGATCTGCACATTTTTCATGTACAGTggtttcgttttttattacatAGCCATACC : 221802 161 : uIleProIleAsnThrIleLysIle<->IleThrAsnGlnThrLeuArgProValVal : 178 !.!! !:!:..!! !||| !...||| |||... |||:!!||| oPheSerValGlyLysIleProAlaGlnAspValAsnValThrPheIleProMetVal 221803 : GTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTG : 221859 179 : TyrProIleTyrSerGlnPheGlyAspValGlnAsnSerProLysTyrGluIleValT : 198 !:!|||.!!! !!! .!!! !|||..!!:! !!|||||| ! !!||||||:!!! PheProPheSerArgPheIleValAspThrArgTyrSerProValAsnGluIleLeuP 221860 : TTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGT : 221919 199 : yrAlaValHisCysValCysGlyTyrThrMetTyrThrValThrThrGlyThrCysGl : 217 :!:!!:!!!!. !:!!...||| ! !|||:!!!:!:!!|||:!!!.!.!!|||.! heSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSe 221920 : TCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAG : 221976 218 : yLeuAlaAlaLeuPheValThrHisAlaCysGlyGlnIleGlnMetIleValSerArg : 236 !|||!.!|||:!!|||!.!..!|||||||||||||||!!:|||:!!:!::!!||| !! rLeuValAlaMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrp 221977 : TTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGG : 222033 237 : LeuGlnAsnLeuLeuAspAspLysAsnLeuGluGlnThrGlnAsnIleHisGlnArgI : 256 |||:!!:!!|||:!!:!!! !::! !!!:..! !.!.|||:!: !!::!|||| LeuLysHisLeuIleAsnGlyArg---AlaAspMetCysAsnAsnValAspArgArgI 222034 : CTGAAACATTTGATCAACGGCCGG---GCGGATATGTGTAACAACGTGGATAGGAGAA : 222090 257 : leValAlaIleValLysArgHisValArgValGlnArgPheAlaAlaValVal : 273 ||!.! !||||||!!.!:!|||||||||:!! !!:!!:!!.! ! !:!! leAlaLysIleValAsnGlnHisValArgIleLeuGlnTyrValArgCysIle 222091 : TAGCGAAGATTGTGAATCAACACGTTCGAATATTGCAGTATGTACGTTGTATC : 222143 vulgar: CbirOr33 8 273 . KQ414889.1 221339 222143 + 385 M 30 90 G 0 6 M 119 357 G 0 3 M 11 33 G 0 3 M 76 228 G 1 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221340 222143 385 + . gene_id 4 ; sequence CbirOr33 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221340 222143 . + . KQ414889.1 exonerate:protein2genome:local exon 221340 222143 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221340 222143 385 + . alignment_id 4 ; Query CbirOr33 ; Align 221340 9 90 ; Align 221436 39 357 ; Align 221796 158 33 ; Align 221832 169 228 ; Align 222060 246 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 374 Query range: 170 -> 391 Target range: 300189 -> 302036 171 : AsnGlnThrLeuArgProValValTyrProIleTyrSerGlnPheGlyAspValGlnA : 190 ||| ! |||! !!:!|||:!!!.!|||||| !|||..! !||| !|||..!|||! AsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnT 300190 : AATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAA : 300247 191 : snSerProLysTyrGluIleValTyrAlaValHisCysValCysGlyTyrThrMetTy : 209 .!||||||! ||||||||||||::: |||||| !!...!.! ! !||||| hrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTy 300248 : CCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTA : 300304 210 : rThrValThrThrGlyThrCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGly : 228 |!.!|||||||||!.!.!!! !.!!|||||||||:!!|||||||||||| !|||||| rAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGly 300305 : CAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGA : 300361 229 : GlnIleGlnMetIleValSerArgLeuGlnAsnLeuLeuAspAspLysAsnLeuGluG : 248 |||||||||!!: :!!:!!||||||:!!:!!|||:!!!!: !.. !! !: GlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGlu------ArgThrGlyG 300362 : CAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAG------AGGACGGGAG : 300415 249 : lnThrGlnAsnIleHisGlnArgIleValAlaIleValLysArgHisValArgValGl : 267 !!! !.!.:!! !! !.!.! !:!:|||!.!||||||::! !||||||!:!||| luLysAspAspGlyProAspProLeuValValIleValArgAspHisValLysValLe 300416 : AGAAGGACGACGGTCCTGATCCTTTGGTCGTTATCGTTCGAGATCACGTGAAGGTTTT : 300472 268 : n{Ar} >>>> Target Intron 1 >>>> {g}PheAlaAlaValValGluGlu : 275 !{||} 140 bp {|}|||||| ! !||||||||| u{Ar}++ ++{g}PheAlaLysAsnValGluGlu 300473 : A{AG}gt.........................ag{A}TTTGCAAAGAACGTTGAGGAA : 300636 276 : MetLeuGlnGluValCysLeuValGluPheAlaSerSerValCysThrIleCysLeuL : 295 ! |||!::!!: !!||||||||||||.!! !..!|||..! ! !:!:||||||| ThrLeuArgAspPheCysLeuValGluIlePheGluSerThrLeuIleLeuCysLeuL 300637 : ACTTTGCGTGACTTCTGCTTAGTGGAAATCTTCGAGTCCACGCTGATTTTGTGTTTGC : 300696 296 : euGluTyrTyrCysIle >>>> Target Intron 2 >>>> LeuAspTrpGln : 304 ||||||||||||||:!: 1050 bp :!! !!. euGluTyrTyrCysLeu++ +-IleLeuLeuHis 300697 : TCGAATACTACTGTTTGgt.........................atATTCTGCTACAT : 301773 305 : LysAsnAspLysValGlyValValSerTyrSerLeuLeuPheValSerPheCysPheA : 324 ::!...|||... !! !!..!! !!!!|||! !! !! ! ||| |||| ArgArgAspSerPheArgThrGlyThrTyrLeuGln***LysPheProPheLeuPheA 301774 : CGGCGAGATTCTTTCCGAACAGGTACTTACTTACAGTAGAagtttccatttcttttca : 301833 325 : snValTyrIleLeuCysHisIleGlyGluLeuLeuMetGluLysSerSerGlnIleGl : 343 |||||!:! !! !! ! ! !.!! :!! ! !!: !!!!!||||||||||| snValPheProArgTyrLeuSerSerPheIleGlyArgAsp***CysSerGlnIleGl 301834 : atGTATTTCCACGGTATTTAAGCAGCTTTATTGGTCGTGATTAGTGTAGCCAAATTGG : 301890 344 : ySerValCysTyrMetIleAsnTrpTyrGlnIleSerProLysLeuValArgSerIle : 362 ||||!.!! ||| !|||:!!||||||.!.:!! !! !!||| !!.! !..!:!! ySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeu 301891 : TTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTT : 301947 363 : IleMetIleIleAlaMetSerSerHisProThrLysLeuThrAlaGlyGlyMetValA : 382 |||:!::!!! !!.!!!:|||..!:!!||| !!||||||||||||||| !!!::!!| IleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleA 301948 : ATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCG : 302007 383 : spLeuSerLeuSerThrPheGlyAsnVal : 391 |||||||||||!:!||||||.!!::!||| spLeuSerLeuAsnThrPheSerSerVal 302008 : ACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: CbirOr33 170 391 . KQ414889.1 300189 302036 + 374 M 72 216 G 2 0 M 23 69 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 32 96 5 0 2 I 0 1046 3 0 2 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300190 302036 374 + . gene_id 5 ; sequence CbirOr33 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300190 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300190 300476 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 300616 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300615 300616 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300617 300713 . + . KQ414889.1 exonerate:protein2genome:local exon 300617 300713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300714 300715 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300714 301763 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301762 301763 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 301764 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301764 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300190 302036 374 + . alignment_id 5 ; Query CbirOr33 ; Align 300190 171 216 ; Align 300406 245 69 ; Align 300618 269 96 ; Align 301764 301 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 349 Query range: 8 -> 266 Target range: 278537 -> 279335 9 : AlaThrSerGlnAsnSerAsnTyrGlnArgAspIleArgTyrAlaPheLysLeuAsnS : 28 .!!:!!||| :!!|||!..!::.!.! !||| ! !|||::! ! :!!:!!||| ThrSerSerThrAspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnA 278538 : ACTTCGTCAACCGATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACC : 278595 29 : erTrpIleLeuGlySerLeuGlyIleTrpProLeuThr<-><->IleArgAsnIleGl : 45 !!|||.!!||| ! !!:!!|||:!!|||||||||!:! :!:! !!.!:!:! rgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGl 278596 : GTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGA : 278652 46 : yGlnTyrValSerAsnIleThrIleValPheTyrAsnPheSerPheValPheAlaIle : 64 !:!! ! !||| :!! ! :!!.!! ! !||| !.!.! !||| !:!: uLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeu 278653 : AAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTG : 278709 65 : ValProPheThrLeuTyrIleMetTyrAsp<->AlaLysAspIleAsnAlaLysLeuA : 83 ||||||! !.!!|||! !! !:!! !||| .!! |||:!!:!!.!!|||:!!! ValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleL 278710 : GTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCA : 278769 84 : rgSerCysGlyLeuLeuAlaPheCysLeuThrAlaMetIleLysTyrLeuIleLeuAl : 102 :!! ! !|||! !|||::!|||||| !! !|||! !|||||||||! !|||||| ysMetIleGlyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMe 278770 : AAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAAT : 278826 103 : aIleArgArgProLysIleGlnLeuCysIleGluTyrIleLysTyrAspTrp<-><-> : 120 ! ||| !! !|||||| !|||:!:.!. !!|||::: |||||| tSerArgGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeu 278827 : GTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTT : 278883 121 : <->TrpGlnValThrPheValSerAspArgGluMetMetLeuLysTyrAlaValThrG : 138 ..! ! ...:::||||||:::||| ! ! !||| !! !| ThrLeuSerTyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleG 278884 : ACACTTTCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTG : 278943 139 : lyArgAsnLeuThrIleIleGlyAlaLeuPheMetTyrGlyAlaGlyIleIleTyrTy : 157 |||||::!|||.!!|||.!!.!!||| !|||||||||..!!.!|||:!!.!!||| lyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrTh 278944 : GACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACAC : 279000 158 : rAlaIleLeu<->IleProIleAsnThrIleLysIleIleThrAsnGlnThrLeuArg : 175 !|||:!::!! :!: ! ! !! :!!|||||| !|||:!!|||:!!||| rAlaValMetProLeuPheAlaValArgThrGluIleIleAspAsnGluThrValArg 279001 : CGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGA : 279057 176 : ProValValTyrProIleTyrSerGlnPheGlyAspValGlnAsnSerProLysTyrG : 195 !! !!.!!:!||||||||| !! .!! !||| !!::!.!||||||..!!:!| SerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheG 279058 : TCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCG : 279117 196 : luIleValTyrAlaValHisCysValCysGlyTyrThrMetTyrThrValThrThrGl : 214 |||||||| ! !:!!!!.|||:!!..!!.!!:!..!:!:|||:!!||||||..!|| luIleValGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGl 279118 : AGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGG : 279174 215 : yThrCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGlnIleGlnMetIle : 233 |.!!|||.!!||| !|||:!!||||||! !|||!.!|||||||||.!!::!!!::!! yAlaCysSerLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeu 279175 : AGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTT : 279231 234 : ValSerArgLeuGlnAsnLeuLeuAspAspLysAsnLeuGluGlnThrGlnAsnIleH : 253 |||!!!!:!|||.!.!!.|||:!!|||! !!!. !..!:!!!:! !!:!! | ValThrLysLeuAspLysLeuIleAspGlyValLysGlyArgLysSerLeuSerThrH 279232 : GTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGC : 279291 254 : is<->GlnArgIleValAlaIleValLysArgHisValArgVal : 266 || ||||||:!:! !! !|||:!!:!!!.!|||:!!!:!:!! isGluGlnArgLeuGlyAspIleIleGluHisHisLeuLysIle 279292 : ATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATA : 279335 vulgar: CbirOr33 8 266 . KQ414889.1 278537 279335 + 349 M 32 96 G 0 6 M 34 102 G 0 3 M 45 135 G 0 9 M 41 123 G 0 3 M 93 279 G 0 3 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278538 279335 349 + . gene_id 6 ; sequence CbirOr33 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278538 279335 . + . KQ414889.1 exonerate:protein2genome:local exon 278538 279335 . + . insertions 24 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278538 279335 349 + . alignment_id 6 ; Query CbirOr33 ; Align 278538 9 96 ; Align 278640 41 102 ; Align 278745 75 135 ; Align 278889 120 123 ; Align 279015 161 279 ; Align 279297 254 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 348 Query range: 11 -> 269 Target range: 212842 -> 213625 12 : GlnAsnSerAsnTyrGlnArgAspIleArgTyrAlaPheLysLeuAsnSerTrpIleL : 31 :!!:!!!!!!.!|||:!!!:! :::... :::... !! !||| !!|||:!!| GluAspCysThrTyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuL 212843 : GAAGACTGTACCTACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTT : 212900 32 : euGlySerLeuGlyIleTrpPro<-><->LeuThrIleArgAsnIleGlyGlnTyrVa : 48 || ! !! !|||:!:|||||| ! ! !:!! ! |||! !:!! !!:! euLysProThrGlyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIl 212901 : TGAAACCAACGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACAT : 212957 49 : lSerAsnIleThrIleValPheTyrAsnPheSerPheValPheAlaIleValProPhe : 67 !:!!...:!:..!! !..! !!! ! !! !! !.!!! !!:! !:!!:!!|||! ! eAlaArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCys 212958 : CGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGC : 213014 68 : ThrLeuTyrIleMetTyrAspAlaLysAspIleAsnAlaLysLeuArgSerCysGlyL : 87 !:!||||||:!:.!. !|||!.!::::::||| ::::!!..!! !! !|||: SerLeuTyrValPheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyI 213015 : AGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCA : 213074 88 : euLeuAlaPheCysLeuThrAlaMetIleLysTyrLeuIleLeuAlaIleArgArgPr : 106 !!!!!|||||||||:!!.!!|||:!! ||||||! ! ||| !:!!!.! !! lePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAs 213075 : TTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGA : 213131 107 : oLysIleGlnLeuCysIleGluTyrIleLysTyrAspTrpTrpGlnValThrPheVal : 125 ! ! |||!:: !|||:!!|||:!!!!:|||||||||||| !.!.:!!||| !! ! pAspIleArgThrCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGlu 213132 : CGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAG : 213188 126 : SerAspArgGluMetMetLeuLysTyrAlaValThrGlyArgAsnLeuThrIleIleG : 145 ..!|||!:!|||!!:||| ! ! !!||| ! !|||!:!!..:!!..!! !||| GluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleC 213189 : GAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTT : 213248 146 : lyAlaLeuPheMetTyrGlyAlaGlyIleIleTyrTyrAlaIleLeuIleProIleAs : 164 !!|||!!!||||||||| .!!|||.!!! !:!||| !:!!:!!:!!||||||!: ysAlaPhePheMetTyr---ThrGlyPheThrPheTyrPheLeuValValProIleSe 213249 : GTGCTTTCTTCATGTAC---ACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAG : 213302 165 : nThrIleLysIleIleThr<-><-><->AsnGlnThrLeuArgProValValTyrPro : 180 !.!! !|||!!::!!.!! ||| !|||!!!|||! !:!!||| !||| rAlaAspLysMetValAlaGluAspLeuAsnValThrPheArgGlnMetValValPro 213303 : CGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCT : 213359 181 : IleTyrSerGlnPheGlyAspValGlnAsnSerProLysTyrGluIleValTyrAlaV : 200 :!!! !!! .!!! !||||||!:! !!|||||| ! !!|||||| !!!:! !: ValSerArgPheIleValAspValArgTyrSerProValAsnGluIlePhePheLeuI 213360 : GTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGA : 213419 201 : alHisCysValCysGlyTyrThrMetTyrThrValThrThrGlyThrCysGlyLeuAl : 219 !!!!. !:!!..!||| !!!::!!.!!:!!.!!..!! !.!!|||.!!||||| leGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAl 213420 : TTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGC : 213476 220 : aAlaLeuPheValThrHisAlaCysGlyGlnIleGlnMetIleValSerArgLeuGln : 238 ||||:!!|||!.!..!|||||||||||||||!!: !!::!::!!||| !!|||:!! aAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGlu 213477 : AGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAA : 213533 239 : AsnLeuLeuAspAspLysAsnLeuGluGlnThrGlnAsnIleHisGlnArgIleValA : 258 :!!|||:!!|||! !!:!.!. !!:..!!:!:!!|||:!: !!.!.||||||!.!! HisLeuIleAspGlyArgGlu---AspMetSerLysAsnValAspAspArgIleAlaV 213534 : CATTTGATAGACGGTAGAGAG---GATATGAGCAAGAATGTGGACGACAGAATCGCGG : 213590 259 : laIleValLysArgHisValArgValGlnArgPhe : 269 .!||||||!!.!:!|||||||||:!!! !!:!!:: alIleValAsnGlnHisValArgIleLeuLysTrp 213591 : TCATCGTGAACCAGCATGTGCGGATACTGAAGTGG : 213625 vulgar: CbirOr33 11 269 . KQ414889.1 212842 213625 + 348 M 27 81 G 0 6 M 112 336 G 1 0 M 19 57 G 0 9 M 75 225 G 1 0 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212843 213625 348 + . gene_id 7 ; sequence CbirOr33 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212843 213625 . + . KQ414889.1 exonerate:protein2genome:local exon 212843 213625 . + . insertions 15 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 212843 213625 348 + . alignment_id 7 ; Query CbirOr33 ; Align 212843 12 81 ; Align 212930 39 336 ; Align 213266 152 57 ; Align 213332 171 225 ; Align 213557 247 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 348 Query range: 14 -> 266 Target range: 217153 -> 217918 15 : AsnTyrGlnArgAspIleArgTyrAlaPheLysLeuAsnSerTrpIleLeuGlySerL : 34 .!.|||:::::::::|||... ::!.!!:!!! !||| !!|||:!:||| ! !!: GluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProM 217154 : GAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGA : 217211 35 : euGlyIleTrpPro<-><->LeuThrIleArgAsnIleGlyGlnTyrValSerAsnIl : 51 !!|||:!!|||||| ! !|||! !! !!.. ! !!:!! !:!!! !!!.:! etGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLe 217212 : TGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACT : 217268 52 : eThrIleValPheTyrAsnPheSerPheValPheAlaIleValProPheThrLeuTyr : 70 :! !! !!.!!!.! ! !! !! !.!. !||| !.!!||||||! !:!!:!!||| uIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyr 217269 : GATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTAC : 217325 71 : IleMetTyrAspAlaLysAspIleAsnAlaLysLeuArgSerCysGlyLeuLeuAlaP : 90 :!:.!. !!!:!.!:!!|||:!! !!! !||||||!:! !! !|||! !||| !| ValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIleP 217326 : GTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCT : 217385 91 : heCysLeuThrAlaMetIleLysTyrLeuIleLeuAlaIleArgArgProLysIleGl : 109 |||||:!!! !|||.!.:!!||||||! ! !||| !:!!!.!!:! !! ! |||!: heCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleAr 217386 : TCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCG : 217442 110 : nLeuCysIleGluTyrIleLysTyrAspTrpTrpGlnValThrPheValSerAspArg : 128 : !|||:!:..! |||:!! |||||| !!.!.|||! !! !! !!.!|||||| gGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArg 217443 : CGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGG : 217499 129 : GluMetMetLeuLysTyrAlaValThrGlyArgAsnLeuThrIleIleGlyAlaLeuP : 148 ||| !|||:!! ! !!||| ! !||||||!!.|||..!:!!:!! !!.!!!!!| GluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPheP 217500 : GAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCT : 217559 149 : heMetTyrGlyAlaGlyIleIleTyrTyrAlaIleLeuIleProIleAsnThrIleLy : 167 |||||||| ::!|||...::::::||| ||| !|||||||||!:!..! !: heMetTyr---SerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyAr 217560 : TCATGTAC---AGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAG : 217613 168 : sIleIleThr<-><-><->AsnGlnThrLeuArgProValValTyrProIleTyrSer : 183 !|||:!!:!! |||! |||!!!! !|||:!!|||!:!|||.!! !.! gIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLys 217614 : AATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAG : 217670 184 : GlnPheGlyAspValGlnAsnSerProLysTyrGluIleValTyrAlaValHisCysV : 203 ! .!! !|||..!!:: !!!!!|||! ! !!|||||||||!:! !:!!!!.! : TyrIleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuI 217671 : TATATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGA : 217730 204 : alCysGlyTyrThrMetTyrThrValThrThrGlyThrCysGlyLeuAlaAlaLeuPh : 222 !!..!||| ! !|||:!! !:!!|||:!!!.!.!!|||.!!||||||||| !|| leAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPh 217731 : TCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTT : 217787 223 : eValThrHisAlaCysGlyGlnIleGlnMetIleValSerArgLeuGlnAsnLeuLeu : 241 |!.!..!||||||||||||||||||:!!:!!:!::!!!:! !!||||||:!!|||:!! eAlaValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIle 217788 : CGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATC : 217844 242 : AspAspLysAsnLeuGluGlnThrGlnAsnIleHisGlnArgIleValAlaIleValL : 261 |||! !!:! !!!:..!!:!.!.!.!:!: !! ||||||!.!::!||||||! AspGlyArg---AlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValS 217845 : GACGGTAGA---GCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCA : 217901 262 : ysArgHisValArgVal : 266 ..!:!|||||||||:!! erGlnHisValArgIle 217902 : GTCAACACGTTCGGATA : 217918 vulgar: CbirOr33 14 266 . KQ414889.1 217153 217918 + 348 M 24 72 G 0 6 M 112 336 G 1 0 M 19 57 G 0 9 M 74 222 G 1 0 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217154 217918 348 + . gene_id 8 ; sequence CbirOr33 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217154 217918 . + . KQ414889.1 exonerate:protein2genome:local exon 217154 217918 . + . insertions 15 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 217154 217918 348 + . alignment_id 8 ; Query CbirOr33 ; Align 217154 15 72 ; Align 217232 39 336 ; Align 217568 152 57 ; Align 217634 171 222 ; Align 217856 246 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 347 Query range: 8 -> 266 Target range: 284484 -> 286285 9 : AlaThrSerGlnAsnSerAsnTyrGlnArgAspIleArgTyrAlaPheLysLeuAsnS : 28 .!!:!!||| :!!|||!..!::.!.! !||| ! !|||::! ! :!!:!!||| ThrSerSerThrAspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnA 284485 : ACTTCTTCAACCGATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACC : 284542 29 : erTrpIleLeuGlySerLeuGlyIleTrpProLeuThr<-><->IleArgAsnIleGl : 45 !!|||.!!||| ! !!:!!|||:!!|||||||||!:! :!:! !!.!:!:! rgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGl 284543 : GTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGA : 284599 46 : yGlnTyrValSerAsnIleThrIleValPheTyrAsnPheSerPheValPheAlaIle : 64 !:!! ! !||| :!! ! :!!.!! ! !||| !.!.! !||| !:!: uLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeu 284600 : AAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTG : 284656 65 : ValProPheThrLeuTyrIleMetTyrAsp<->AlaLysAspIleAsnAlaLysLeuA : 83 ||||||! !.!!|||! !! !:!! !||| .!! |||:!!:!!.!!|||:!!! ValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleL 284657 : GTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCA : 284716 84 : rgSerCysGlyLeuLeuAlaPheCysLeuThrAlaMetIleLysTyrLeuIleLeuAl : 102 :!! ! !|||! !|||::!||||||:!!! !||| !|||||||||! !|||||| ysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIl 284717 : AAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAAT : 284773 103 : aIleArgArgProLysIleGlnLeuCysIleGluTyrIleLysTyrAsp{Tr} >>> : 119 ! ||| !! !|||||| ! !|||:!::!! !!|||::: |||{||} eSerArgGlyGlyLysIleGlyGlnCysValLysAspIleArgAlaAsp{Tr}++ 284774 : TTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGAC{TG}gt... : 284828 120 : > Target Intron 1 >>>> {p}TrpGlnValThrPheValSerAspArgGluM : 130 1012 bp {|} ..! !!:: ...:::||||||: +-{p}LeuSerHisSerGlnGluGluGluArgGluI 284829 : ......................ac{G}CTTTCGCATAGtcaagaagaggagagagaga : 285869 131 : etMetLeuLysTyrAlaValThrGlyArgAsnLeuThrIleIleGlyAlaLeuPheMe : 149 ::||| ! ! !||| !! !||||||::!|||.!!|||.!! !!||| !||||| leMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMe 285870 : tcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCAT : 285926 150 : tTyrGlyAlaGlyIleIleTyrTyrAlaIleLeu<->IleProIleAsnThrIleLys : 167 ||||..!!.!|||.!!.!!||| !.!!:!::!! :!: !! ! !! :!! tTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGlu 285927 : GTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAG : 285983 168 : IleIleThrAsnGlnThrLeuArgProValValTyrProIleTyrSerGlnPheGlyA : 187 |||||| !|||:!!|||:!!||| !! !!.!!:!||||||||| !! .!! !| IleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuA 285984 : ATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCG : 286043 188 : spValGlnAsnSerProLysTyrGluIleValTyrAlaValHisCysValCysGlyTy : 206 || !!::!.!||||||..!!:!||||||||| ! !:!!!!.|||:!!..!!.!!: spProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPh 286044 : ATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTT : 286100 207 : rThrMetTyrThrValThrThrGlyThrCysGlyLeuAlaAlaLeuPheValThrHis : 225 !..!!!:|||:!!||||||..!|||.!!|||.!!|||||||||:!!||||||! !||| eValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHis 286101 : CGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCAC : 286157 226 : AlaCysGlyGlnIleGlnMetIleValSerArgLeuGlnAsnLeuLeuAspAspLysA : 245 !.!|||||||||.!!::!!!::!!|||!!!!:!|||.!.!!.|||:!!|||! !! ValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValL 286158 : GTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGA : 286217 246 : snLeuGluGlnThrGlnAsnIleHis<->GlnArgIleValAlaIleValLysArgHi : 263 !. !..!:!! ! !!:!! ||| ||||||:!:! !! !|||:!!:!!!.!|| ysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHi 286218 : AAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCA : 286274 264 : sValArgVal : 266 |:!!!:!:!! sLeuLysIle 286275 : TCTGAAGATA : 286285 vulgar: CbirOr33 8 266 . KQ414889.1 284484 286285 + 347 M 32 96 G 0 6 M 34 102 G 0 3 M 44 132 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 41 123 G 0 3 M 93 279 G 0 3 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284485 286285 347 + . gene_id 9 ; sequence CbirOr33 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284485 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284485 284825 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286285 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286285 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284485 286285 347 + . alignment_id 9 ; Query CbirOr33 ; Align 284485 9 96 ; Align 284587 41 102 ; Align 284692 75 132 ; Align 285839 120 123 ; Align 285965 161 279 ; Align 286247 254 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 338 Query range: 14 -> 300 Target range: 232438 -> 234620 15 : AsnTyrGlnArgAspIleArgTyrAlaPheLysLeuAsnSerTrpIleLeuGlySerL : 34 ||| ! !|||||| !..!|||::!.!!:!!:!!||| !!|||.!!||| ! !!: AsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProM 232439 : AACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGA : 232496 35 : euGlyIleTrpProLeuThrIleArg<-><->AsnIleGlyGlnTyrValSerAsnIl : 51 !!||| !||||||! !..!! !..! !.. ! !||| :!!:!!!!.:! etGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLe 232497 : TGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACT : 232553 52 : eThrIleValPheTyrAsnPheSerPheValPheAlaIleValProPheThrLeuTyr : 70 : !! !:!! !! !:!!! ! !.!.:!!! !:!!|||||||||! !! !|||!:! uLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPhe 232554 : GTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTC : 232610 71 : IleMetTyrAspAlaLysAspIleAsnAlaLysLeuArgSerCysGlyLeuLeuAlaP : 90 |||:!!!:!!!:! !! !..!:!!.!.! !!:!:!!!:!||| !|||! !:!!::! IleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerH 232611 : ATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTC : 232670 91 : heCysLeuThrAlaMetIleLysTyrLeuIleLeuAlaIleArgArgProLysIleGl : 109 !! !|||! !!.! :!:!!.|||! ! !||| ! !!:! ! ! ! |||! isPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLe 232671 : ACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCT : 232727 110 : nLeuCysIleGluTyrIleLysTyrAspTrpTrpGlnValThrPheValSerAspArg : 128 ! !|||:!:||| ! :!:||| ! |||||| ! .!.|||! ! ! ! !!||| uTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArg 232728 : CTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGT : 232784 129 : GluMetMetLeuLysTyrAlaValThrGlyArgAsnLeuThrIleIleGlyAlaLeuP : 148 !!::!!||||||||| !!||| ! !||||||::::!!.!! !|||!.!|||!!!! AspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheC 232785 : GATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTT : 232844 149 : heMetTyr<->GlyAlaGlyIleIleTyrTyrAlaIleLeuIleProIleAsnThrIl : 166 !|||:!! |||!.!||| ! ! ! !.!! ! !:!!! !!!:!:!|||.! ysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPh 232845 : GCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTT : 232901 167 : eLysIle<->IleThrAsnGlnThrLeuArgProValValTyrProIleTyrSerGln : 184 ! ! :!: ! ! !!:! ! :!!:!! !|||:!! !! ! !!.!!|||!!!:!! eTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLys 232902 : CTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAG : 232958 185 : PheGlyAspValGlnAsnSerProLysTyrGluIleValTyrAlaValHisCysValC : 204 .!. !|||..!::! !||||||! ! !!||||||:!!!:!!.!:!!!!.|||:!!! LeuMetAspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuS 232959 : CTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCT : 233018 205 : ysGlyTyrThrMetTyrThrValThrThrGlyThrCysGlyLeuAlaAlaLeuPheVa : 223 !|||!:!! !:!! !!:!!||||||..!|||.!!|||||||||!.!|||:!!.!.!. erGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAl 233019 : CCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGC : 233075 224 : lThrHisAlaCysGlyGlnIleGlnMetIleValSerArgLeuGlnAsnLeuLeuAsp : 242 !! !|||||||||||||||:!:.!.:!!:!::!!|||!:!|||.!.:!!|||:!!||| aMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAsp 233076 : GATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGAC : 233132 243 : AspLysAsnLeuGluGlnThrGlnAsnIleHisGlnArgIleValAlaIleValLysA : 262 ! |||...! !|||:!! ::! ! !!.::!!:!:!!! ! !||||||:!!! AlaLysGlyGlnGluGlu---ArgValAlaGlnArgLysLeuGlyPheIleValGluH 233133 : GCGAAAGGGCAGGAGGAG---AGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGC : 233189 263 : rgHisValArgValGln{Ar} >>>> Target Intron 1 >>>> {g}PheAl : 270 .!|||:!!|||..! !{!!} 1315 bp {!}||| isHisLeuArgThrLeu{Se}++ ++{r}PheIl 233190 : ATCATTTGCGTACATTA{AG}gt.........................ag{T}TTTAT : 234528 271 : aAlaValValGluGluMetLeuGlnGluValCysLeuValGluPheAlaSerSerVal : 289 ! ! !:!!|||.!.:!::!!.!. !:!!||||||||||||!!.!.!.!!!!!..! eArgAsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuValGlyCysThr 234529 : ACGGAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACG : 234585 290 : CysThrIleCysLeuLeuGluTyrTyrCysIle : 300 ! !.!!!:|||:!!||||||||||||! :!! LeuAsnMetCysMetLeuGluTyrTyrLeuLeu 234586 : TTGAACATGTGCATGCTCGAGTATTATTTACTC : 234620 vulgar: CbirOr33 14 300 . KQ414889.1 232438 234620 + 338 M 28 84 G 0 6 M 108 324 G 0 3 M 18 54 G 0 3 M 80 240 G 1 0 M 18 54 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232439 234620 338 + . gene_id 10 ; sequence CbirOr33 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232439 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232439 233208 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234620 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234620 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232439 234620 338 + . alignment_id 10 ; Query CbirOr33 ; Align 232439 15 84 ; Align 232529 43 324 ; Align 232856 151 54 ; Align 232913 169 240 ; Align 233153 250 54 ; Align 234525 269 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 330 Query range: 7 -> 285 Target range: 226888 -> 227731 8 : CysAlaThrSerGlnAsnSerAsnTyrGlnArgAspIleArgTyrAlaPheLysLeuA : 27 ...:!! !:!! !.!.!:!:!!||||||..! !!:!:!.! ::!.!.:!!|||| AlaSerLeuAlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuA 226889 : GCGTCTCTCGCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGA : 226946 28 : snSerTrpIleLeuGlySerLeuGlyIleTrpProLeuThrIleArgAsn<-><->Il : 44 || !!|||:!:||| ! !!|||||||||||||||! !:!! !!:!!:! || snArgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgLysSerSerArgIl 226947 : ATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAAT : 227003 45 : eGlyGlnTyrValSerAsnIleThrIleValPheTyrAsnPheSerPheValPheAla : 63 ||||::!! ! !!||| :!:! ! ! !!.!!! ! !! !.!. !|||! ! eGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGlu 227004 : AGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAG : 227060 64 : IleValProPheThrLeuTyrIleMetTyrAspAlaLysAspIleAsnAlaLysLeuA : 83 :!:||| !! ! !||||||:!::!: !!:!.!|||! ! ! !! !! !|||! LeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuL 227061 : TTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGA : 227120 84 : rgSerCysGlyLeuLeuAlaPheCysLeuThrAlaMetIleLysTyrLeuIleLeuAl : 102 :!! ! !|||! !:!!:!!|||! ! !! !:!!:!::!!||||||! !!!:|||.! ysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuTh 227121 : AAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGAC : 227177 103 : aIleArgArgProLysIleGlnLeuCysIleGluTyrIleLysTyrAspTrpTrpGln : 121 !.!!!.!..! ! ! |||! !|||:!!||| ||||||!::|||||| !.!. rPheHisGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsn 227178 : GTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAAT : 227234 122 : ValThrPheValSerAspArgGluMetMetLeuLysTyrAlaValThrGlyArgAsnL : 141 :!!! !!:!:!!..!||||||.!.:!!|||:!!! !|||||| ! !||||||!!.| IleArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysL 227235 : ATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAAT : 227294 142 : euThrIleIleGlyAlaLeuPheMetTyrGlyAlaGlyIleIleTyrTyrAlaIleLe : 160 ||! !! !||| !!.!!!!!|||:!:!:!...::: :::...:::||| |||:! euIleThrIleCysThrPhePheValPheSerSerPheValPhePheTyr---IleVa 227295 : TGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctac---ATCGT : 227348 161 : uIleProIleAsnThrIleLysIleIleThr<-><-><->AsnGlnThrLeuArgPro : 176 !:!!|||||||||.!! !!..:!! !||| |||!!.!:!! !! !! ! lValProIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGln 227349 : CGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAG : 227405 177 : ValValTyrProIleTyrSerGlnPheGlyAspValGlnAsnSerProLysTyrGluI : 196 :!! !!:!|||.!! !.! .!!!.!||||||!:: !!|||||| !!|||| MetProPheProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGluI 227406 : ATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGA : 227465 197 : leValTyrAlaValHisCysValCysGlyTyrThrMetTyrThrValThrThrGlyTh : 215 || !!!:!:!!|||!!.! !||| ||| !..!:!!:!! !||||||:!!!.!.! lePhePheSerValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAl 227466 : TCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGC : 227522 216 : rCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGlnIleGlnMetIleVal : 234 !|||.!!:!!|||||||||.!!!.!..!|||||||||||||||!!::!!:!!:!:||| aCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuVal 227523 : TTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTG : 227579 235 : SerArgLeuGlnAsnLeuLeuAspAspLysAsnLeuGluGlnThrGlnAsnIleHisG : 254 ||| !!||| !:!!|||:!!|||! !!:! !!!:..!!:!:!!!..:!: !!. SerTrpLeuGlyHisLeuIleAspGlyArg---AlaAspMetSerLysThrLeuAspA 227580 : TCCTGGCTGGGACATTTGATCGACGGCAGA---GCGGATATGAGCAAAACACTGGATG : 227636 255 : lnArgIleValAlaIleValLysArgHisValArgValGlnArgPheAlaAlaValVa : 273 !.||||||!.!::!||||||! !.!|||||||||:!! !!:!! !!.!.!! !:! spArgIleAlaSerIleValThrHisHisValArgIleLeuLysCysValThrCysIl 227637 : ATAGAATCGCTAGCATCGTCACTCACCACGTTCGAATATTGAAGTGTGTAACGTGTAT : 227693 274 : lGluGluMetLeuGlnGluValCysLeuValGluPhe : 285 ! ! !:!!! !!::!!: !! !|||:::...||| eTyrLeuLeuTyrArgAsp***PheLeuLeuAsnPhe 227694 : CTATTTGTTGTATCGTGATTAATTTCTcttgaatttt : 227731 vulgar: CbirOr33 7 285 . KQ414889.1 226888 227731 + 330 M 36 108 G 0 6 M 114 342 G 1 0 M 12 36 G 0 9 M 74 222 G 1 0 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226889 227731 330 + . gene_id 11 ; sequence CbirOr33 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226889 227731 . + . KQ414889.1 exonerate:protein2genome:local exon 226889 227731 . + . insertions 15 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 226889 227731 330 + . alignment_id 11 ; Query CbirOr33 ; Align 226889 8 108 ; Align 227003 44 342 ; Align 227345 159 36 ; Align 227390 171 222 ; Align 227612 246 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 311 Query range: 21 -> 338 Target range: 259772 -> 261844 22 : TyrAlaPheLysLeuAsnSerTrpIleLeuGlySerLeuGlyIleTrpPro<-><->L : 39 |||::!.!!:!!!!!||| !!|||.!!||| ! !!:!!||| !|||||| ! TyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerS 259773 : TATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCAT : 259830 40 : euThrIleArgAsnIleGlyGlnTyrValSerAsnIleThrIleValPheTyrAsnPh : 58 !:!!! ! !!..:!!! !:!! !:!!||| !||| !||| !!.!!! ! !! erSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSe 259831 : CCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAG : 259887 59 : eSerPheValPheAlaIleValProPheThrLeuTyrIleMetTyrAspAlaLysAsp : 77 !!!!.!.:!! !!.!!:!::!!|||! !..!|||:!!!!::!: !!!: !:!!..! rThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSer 259888 : TACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGT : 259944 78 : IleAsnAlaLysLeuArgSerCysGlyLeuLeuAlaPheCysLeuThrAlaMetIleL : 97 :!: !! !||| !!:! ! !|||! !|||.!! !!! !!!..!!.! |||! LeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleA 259945 : TTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTA : 260004 98 : ysTyrLeuIleLeuAlaIleArgArgProLysIleGlnLeuCysIleGluTyrIleLy : 116 !.||| !! ||| !:!:||| !! ! ! |||! !|||:!:|||:!!:!::! snTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGl 260005 : ATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGA : 260061 117 : sTyrAspTrpTrpGlnValThrPheValSerAspArgGluMetMetLeuLysTyrAla : 135 ! !!|||||| ! :!!||| ! !!.!|||!:!.!.:!!||||||!:!|||||| uAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAla 260062 : GAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCG : 260118 136 : ValThrGlyArgAsnLeuThrIleIleGlyAlaLeuPheMetTyrGlyAlaGlyIleI : 155 ! !|||||| !!:!!.!! ! ! !!||| !|||:!! ! |||!.!! !:!: LysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuC 260119 : AAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGT : 260178 156 : leTyrTyrAlaIleLeuIleProIleAsnThrIleLysIleIleThrAsnGlnThrLe : 174 !!:!! ! !:!! !:!: !! !!.. !:!:! ! !:!: !|||:!!||| ysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrAr 260179 : GCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAG : 260235 175 : uArgProValValTyrPro<-><->IleTyrSerGlnPheGlyAspValGlnAsnSer : 191 !! ! ! !:!!! ||| :!:|||!.!:!!.!. !:!!|||.!.:!!||| gIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSer 260236 : GATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGT : 260292 192 : ProLysTyrGluIleValTyrAlaValHisCysValCysGlyTyrThrMetTyrThrV : 211 |||! ! !!||||||||| !!.!|||!!.! !|||! |||!:!! !:!! !!:!! ProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerS 260293 : CCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGA : 260352 212 : alThrThrGlyThrCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGlnIl : 230 !|||..!|||! !! !.!!|||||||||:!!.!...!.!!|||||||||||||||:! erThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLe 260353 : GCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTT : 260409 231 : eGlnMetIleValSerArgLeuGlnAsnLeuLeuAspAspLysAsnLeuGluGlnThr : 249 :.!.:!!:!!:!!..! !!:!! !.!.!!!:!!|||!!:..!!.. !..!:!!! ! uAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLys 260410 : GAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAA : 260466 250 : GlnAsnIleHisGlnArgIleValAlaIleValLysArgHisValArgValGln{Ar} : 268 :!! ! ! !:!!..!|||! !!.!||||||:!!!.!|||:!!|||!.!! {! } LysAlaProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeu{Th} 260467 : AAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC{AC} : 260523 269 : >>>> Target Intron 1 >>>> {g}PheAlaAlaValValGluGluMetLe : 277 1103 bp {!}!!. ! !!.!:!!||| !! ++ ++{r}LeuTyrArgAlaLeuGlu***ArgAr 260524 : gt.........................ag{T}TTGTATCGGGCCTTAGAATAACGCAG : 261653 278 : uGlnGluValCysLeuValGluPheAlaSerSerVal<->CysThrIleCysLeuLeu : 295 !|||..! ! !!! !!!:!:!::!! !..! ! |||..!||| !!!!!!. gGlnArgProThrPheTyrAspTyrSerTyrAspCysAsnCysValIleIlePhePhe 261654 : GCAAAGGCCAACATTTTACGATTACAGTTACGATTGCAATTGTGTAATAATCTTTTTc : 261710 296 : GluTyrTyrCysIleLeu<->AspTrpGlnLysAsnAspLysValGlyValValSerT : 314 |||::: :::||| !!:||| :!!.!.|||! ! !..!:!! !!!!| ***TyrPhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrT 261711 : tgatatttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGT : 261770 315 : yrSerLeuLeuPheValSerPheCysPheAsnValTyrIleLeuCysHisIleGlyGl : 333 ||! !:!!:!!.!.:!!:!!.!!||||||||||||!:!|||:!!|||:!!|||||||| yrPheMetMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGl 261771 : ATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGA : 261827 334 : uLeuLeuMetGluLys : 338 |:!!|||! !|||:!! uIleLeuThrGluGln 261828 : AATACTAACGGAACAG : 261844 vulgar: CbirOr33 21 338 . KQ414889.1 259772 261844 + 311 M 17 51 G 0 6 M 142 426 G 0 6 M 87 261 S 0 2 5 0 2 I 0 1099 3 0 2 S 1 1 M 21 63 G 0 3 M 12 36 G 0 3 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259773 261844 311 + . gene_id 12 ; sequence CbirOr33 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259773 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259773 260524 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 261627 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261626 261627 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261628 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261628 261844 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259773 261844 311 + . alignment_id 12 ; Query CbirOr33 ; Align 259773 22 51 ; Align 259830 39 426 ; Align 260262 181 261 ; Align 261629 269 63 ; Align 261695 290 36 ; Align 261734 302 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 265 Query range: 21 -> 268 Target range: 262849 -> 263602 22 : TyrAlaPheLysLeuAsnSerTrpIleLeuGlySerLeuGlyIleTrpProLeu<->< : 40 |||::!.!.:!!:!!||| !!|||:!:||| ! !!:!!||| !||||||||| TyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerA 262850 : TACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCG : 262907 41 : ->ThrIleArgAsnIleGlyGlnTyrValSerAsnIleThrIleValPheTyrAsnPh : 58 :!!||| !!..!!:! !!:! !:!!!!! !:!! !|||||| !!! ! !!! laSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCy 262908 : CCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTG : 262964 59 : eSerPheValPheAlaIleValProPheThrLeuTyrIleMetTyrAspAlaLysAsp : 77 ! !.!.:!!! !.!!:!!:!!|||! !! !|||:!!|||:!: !!:|||:!!:!! sLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsn 262965 : TCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAAT : 263021 78 : IleAsnAlaLysLeuArgSerCysGlyLeuLeuAlaPheCysLeuThrAlaMetIleL : 97 .!!:!! !||||||!:! ! !|||! !|||!.! !! !!!..!!.!||||||! PheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleA 263022 : TTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCA : 263081 98 : ysTyrLeuIleLeuAlaIleArgArgProLysIleGlnLeuCysIleGluTyrIleLy : 116 !.||| ! ||| !:!!!.!!!! ! ! |||||| !|||:!::!!:!!:!::! snTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGl 263082 : ATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCA : 263138 117 : sTyrAspTrpTrpGlnValThrPheValSerAspArgGluMetMetLeuLysTyrAla : 135 ! ! ||||||!! |||||| :!!..!|||!:!...!!:||||||||| !!||| nGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAla 263139 : GGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCG : 263195 136 : ValThrGlyArgAsnLeuThrIleIleGlyAlaLeuPheMetTyrGlyAlaGlyIleI : 155 ! !|||||| !!:!!.!! ! ! !!|||:!!|||||| ! !::! !!!: LysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetC 263196 : AAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGT : 263255 156 : leTyrTyrAlaIleLeuIleProIleAsnThrIleLysIleIleThrAsnGlnThr<- : 174 ! ! ! ! !:!! ! !! !!.. !:!:! ! !|||:!!||| ysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrAr 263256 : GCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAG : 263312 175 : ><->LeuArgProValValTyrProIleTyrSerGlnPheGlyAspValGlnAsnSer : 191 |||||| !:!! !! !|||:!:|||!.!:!!.!! ! |||.!.!..!:! gIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThrAsn 263313 : AATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAAT : 263369 192 : ProLysTyrGluIleValTyrAlaValHisCysValCysGlyTyrThrMetTyrThrV : 211 |||! ! !!|||||| !! !|||..!!!.! !:!!! |||!:!! !:!: !.!!. ProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaT 263370 : CCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGA : 263429 212 : alThrThrGlyThrCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGlnIl : 230 .!|||..!|||.!!! !|||:!!.!!|||:!!|||!.! !|||||||||||||||:! hrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLe 263430 : CAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTT : 263486 231 : eGlnMetIleValSerArgLeuGlnAsnLeuLeuAspAspLysAsnLeuGluGlnThr : 249 :.!.:!!:!::!!||| !!:!! !.!.!!!:!!:!!.!....!.. !|||.!.! ! uAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLys 263487 : GAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAG : 263543 250 : GlnAsnIleHisGlnArgIleValAlaIleValLysArgHisValArgValGlnArg : 268 .!. ! ! ! ..!|||! !!.!||||||:!!!.!|||:!!||||||! !||| AsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeuArg 263544 : AATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTGAGG : 263602 vulgar: CbirOr33 21 268 . KQ414889.1 262849 263602 + 265 M 18 54 G 0 6 M 134 402 G 0 6 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262850 263602 265 + . gene_id 13 ; sequence CbirOr33 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262850 263602 . + . KQ414889.1 exonerate:protein2genome:local exon 262850 263602 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262850 263602 265 + . alignment_id 13 ; Query CbirOr33 ; Align 262850 22 54 ; Align 262910 40 402 ; Align 263318 174 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 255 Query range: 21 -> 268 Target range: 266637 -> 267390 22 : TyrAlaPheLysLeuAsnSerTrpIleLeuGlySerLeuGlyIleTrp<->ProLeuT : 40 |||::!.!.:!!|||||| !!|||.!!||| ! !!:!!||| !||| ||||||: TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuS 266638 : TACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGT : 266695 41 : hrIleArgAsn<->IleGlyGlnTyrValSerAsnIleThrIleValPheTyrAsnPh : 58 !!:!!! !::! :!!! !!:! !|||||| !! ! !||||||.!!! ! !!! erLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCy 266696 : CACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTG : 266752 59 : eSerPheValPheAlaIleValProPheThrLeuTyrIleMetTyrAspAlaLysAsp : 77 !|||.!.:!!|||.!!:!!:!!|||! ! !!!!:!!:!!:!: !!:! !:!!..! sSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSer 266753 : CTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGT : 266809 78 : IleAsnAlaLysLeuArgSerCysGlyLeuLeuAlaPheCysLeuThrAlaMetIleL : 97 |||..!.!!|||:!!!:! !! !|||! !|||::! !!! !!!..!!.! |||! IleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleA 266810 : ATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTA : 266869 98 : ysTyrLeuIleLeuAlaIleArgArgProLysIleGlnLeuCysIleGluTyrIleLy : 116 !.||| !! !||| !:!!|||!!! !:!!|||!:: !|||:!!|||:!!!!::! snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 266870 : ACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCA : 266926 117 : sTyrAspTrpTrpGlnValThrPheValSerAspArgGluMetMetLeuLysTyrAla : 135 ! |||||| !! |||||| !..!|||!:!:!!:!!||||||||| !!||| nThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAla 266927 : AACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCG : 266983 136 : ValThrGlyArgAsnLeuThrIleIleGlyAlaLeuPheMetTyrGlyAlaGlyIleI : 155 !! !|||||| !!:!!.!!|||.!! !!||| !|||||| ! !!!.!! !:!! ArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuG 266984 : AGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCG : 267043 156 : leTyrTyrAlaIleLeuIleProIleAsnThrIleLysIleIleThrAsnGlnThrLe : 174 !|||! !!.!||| ! !! !! !! ! ! !:!! !|||:!!||| lyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrAr 267044 : GCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAG : 267100 175 : uArgProValValTyrPro<-><->IleTyrSerGlnPheGlyAspValGlnAsnSer : 191 !! ! ! !:!!! ||| :!!|||!.!:!!.!. !! |||.!.!.!||| gIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSer 267101 : GATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGC : 267157 192 : ProLysTyrGluIleValTyrAlaValHisCysValCysGlyTyrThrMetTyrThrV : 211 |||! ! !!||||||||| !!.! !!!.! !|||! |||!:!! !:!! !!:!! ProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerS 267158 : CCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGA : 267217 212 : alThrThrGlyThrCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGlnIl : 230 !..!..!|||.!!! !.!!|||||||||:!!|||!.!.!!|||||||||||||||:! erValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLe 267218 : GCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCT : 267274 231 : eGlnMetIleValSerArgLeuGlnAsnLeuLeuAspAspLysAsnLeuGluGlnThr : 249 :...:!!:!::!!! ! !!:!!:!!.!.!!!:!!:!! ...!.. !....!.! ! uSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLys 267275 : GAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAG : 267331 250 : GlnAsnIleHisGlnArgIleValAlaIleValLysArgHisValArgValGlnArg : 268 .!. ! ! !.!.!:!|||! !!.!:!!|||:!!!.!|||:!!|||||| !||| AsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeuArg 267332 : AACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGAGG : 267390 vulgar: CbirOr33 21 268 . KQ414889.1 266637 267390 + 255 M 16 48 G 0 3 M 6 18 G 0 3 M 137 411 G 0 6 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266638 267390 255 + . gene_id 14 ; sequence CbirOr33 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266638 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266638 267390 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266638 267390 255 + . alignment_id 14 ; Query CbirOr33 ; Align 266638 22 48 ; Align 266689 38 18 ; Align 266710 44 411 ; Align 267127 181 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 246 Query range: 21 -> 277 Target range: 236852 -> 237626 22 : TyrAlaPheLysLeuAsnSerTrpIleLeuGlySerLeuGlyIleTrpProLeuThrI : 41 |||::!.!!:!!! !||| !!||| :!! !|||:!!|||! !||||||! ! ! TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheS 236853 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCT : 236910 42 : leArgAsnIleGlyGlnTyrValSerAsnIleThrIleValPheTyrAsnPheSerPh : 60 !|||:!!! !::! !!:!!|||...||| !! !|||.!!! ! !! !:!!.! erSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIl 236911 : CGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAAT : 236967 61 : eValPheAlaIleValProPheThrLeuTyrIleMetTyrAspAlaLysAspIleAsn : 79 .:!!|||:!!|||:!!|||! !:!!|||:!!:!!||| !!: ! ! !.!! !! eLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyr 236968 : ACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTAC : 237024 80 : AlaLysLeuArgSerCysGlyLeuLeuAlaPheCysLeuThrAlaMetIleLysTyrL : 99 .!!|||:!!!:!! ! !|||! !|||::! !!! :!! !..!!!:|||!..||| ThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrT 237025 : ACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACA : 237084 100 : euIleLeuAlaIleArgArgProLysIleGlnLeuCysIleGluTyrIleLysTyrAs : 118 !!!:||| !:!:|||||| !! |||!::! !! !.!!.!.:!!!!::!! !|| hrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAs 237085 : CCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGA : 237141 119 : pTrpTrpGlnValThrPheValSerAspArgGluMetMetLeuLysTyrAlaValThr : 137 |||| ! !..!||| ... :::|||:::||||||||||||||| ! ! pTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPhe 237142 : TTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTT : 237198 138 : GlyArgAsnLeuThrIleIleGlyAlaLeuPheMetTyrGlyAlaGlyIleIleTyrT : 157 .!!||| !! !.!!||| ! !!.!!:!!|||!!::!!|||!.! !:!! !|||! SerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrC 237199 : AGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATT : 237258 158 : yrAlaIleLeuIleProIleAsnThrIleLysIleIleThrAsnGlnThr<-><->Le : 174 !!.!!!: ! !!! !!..! !:!! :!::!! !|||:!!||| || ysValMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLe 237259 : GTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTT : 237315 175 : uArgProValValTyrProIleTyrSerGlnPheGlyAspValGlnAsnSerProLys : 193 |||| !:!! !! |||!!:|||!.! !.!! ! |||.!.!..!:! !!! ! uArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMet 237316 : GCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATG : 237372 194 : TyrGluIleValTyrAlaValHisCysValCysGlyTyrThrMetTyrThrValThrT : 213 !!!!:|||||| ! ! !!!.! !:!!! !|||!:!! ! ! !!!.! !.!!! AsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaI 237373 : AACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGA : 237432 214 : hrGlyThrCysGlyLeuAlaAlaLeuPheValThrHisAlaCysGlyGlnIleGlnMe : 232 !.!!..! .!!|||.!!::! !.!...!:!!||||||! !||||||:!:...:! leSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerVa 237433 : TCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGT : 237489 233 : tIleValSerArgLeuGlnAsnLeuLeuAspAspLysAsnLeuGluGlnThrGlnAsn : 251 !:!!:!!! ! !:!!:!!:!!!!!:!!..!!!: !!..! !..! !! !.!.:!! lValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAsp 237490 : GGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGAT : 237546 252 : IleHisGlnArgIleValAlaIleValLysArgHisValArgValGlnArgPheAlaA : 271 ! !.!...!||| !.!!||||||:!!..!|||:!!|||||| !!:!! !.!. HisPheAspGluIleProThrIleValGluGluHisLeuArgValLeuLys***ValC 237547 : CATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAGTAT : 237606 272 : laValValGluGluMetLeu : 277 .!:!!:!!!!: !!!:||| ysLeuLeuAspLeuIleLeu 237607 : GTTTGTTGGATTTGATTTTG : 237626 vulgar: CbirOr33 21 277 . KQ414889.1 236852 237626 + 246 M 152 456 G 0 6 M 104 312 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236853 237626 246 + . gene_id 15 ; sequence CbirOr33 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236853 237626 . + . KQ414889.1 exonerate:protein2genome:local exon 236853 237626 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 236853 237626 246 + . alignment_id 15 ; Query CbirOr33 ; Align 236853 22 456 ; Align 237315 174 312 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 226 Query range: 277 -> 398 Target range: 286806 -> 287243 278 : GlnGluValCysLeuValGluPheAlaSerSerValCysThrIleCysLeuLeuGluT : 297 .!.!!::!!|||! ! !.!. !!.!! !:!!:!! !.!!.!! !:!!! !..!! AspAspLeuCysTyrTyrHisThrValMetAlaIleIleAlaPheValMetTyrSerL 286807 : GACGACTTGTGTTATTACCATACTGTAATGGCAATAATTGCATTCGTCATGTACTCGT : 286864 298 : yrTyrCysIleLeuAspTrpGlnLysAsnAspLysValGlyValValSerTyrSerLe : 316 ! !.!!! !!!:|||:!!:!!!:!!!:! :!!|||..!:!!!!!|||!!! euSerValPhe***GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysTh 286865 : TGTCAGTTTTCTAGGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCAC : 286921 317 : uLeuPheValSerPheCysPheAsnValTyrIleLeuCysHisIleGlyGluLeuLeu : 335 !|||.!.||||||||| |||||||||!:!|||||||||:!!|||||||||:!!||| rLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeu 286922 : GTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTC : 286978 336 : MetGluLys >>>> Target Intron 1 >>>> SerSerGlnIleGlySerVa : 345 |||::: 74 bp !!! !:!!:!!|||! ! SerGluGln++ ++CysLeuLysValGlyLeuSe 286979 : TCCGAACaggt.........................agtGCTTAAAAGTCGGCTTGTC : 287082 346 : lCysTyrMetIleAsnTrpTyrGlnIleSerProLysLeuValArgSerIleIleMet : 364 ! !|||||||||:!!||||||!:::!: !! !||| !!.!!:!.!!:!:|||:!! rThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeu 287083 : AACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTG : 287139 365 : IleIleAlaMetSerSerHisProThrLysLeuThrAlaGlyGlyMetValAspLeuS : 384 |||.!!|||:!!|||!:! ! !!! !||||||||||||||| !!!::!!||||||| IlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuS 287140 : ATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCT : 287199 385 : erLeuSerThrPheGlyAsnValMetLysThrSerIleAlaTyr : 398 ||||||||!:!||| !!!:!|||! ! ! !!:!:!!:!!||| erLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 287200 : CTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 287243 vulgar: CbirOr33 277 398 . KQ414889.1 286806 287243 + 226 M 61 183 5 0 2 I 0 70 3 0 2 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286807 287243 226 + . gene_id 16 ; sequence CbirOr33 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286807 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286807 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287243 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287243 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286807 287243 226 + . alignment_id 16 ; Query CbirOr33 ; Align 286807 278 183 ; Align 287064 339 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 199 Query range: 10 -> 197 Target range: 294654 -> 295227 11 : SerGlnAsnSerAsnTyrGlnArgAspIleArgTyrAlaPheLysLeuAsnSerTrpI : 30 !!!..!:!!..!!.! !!::!!.!|||:!: ! !!::!.!!|||! ! ! !! !!: ThrMetAspAspThrAsnArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgL 294655 : ACCATGGACGATACTAACAGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGC : 294712 31 : leLeuGlySerLeuGlyIleTrpProLeuThrIleArgAsn<-><-><->IleGlyGl : 46 !:||| ! !!:!!|||:!!|||||||||! ! !!!!:!! :!:..!:! euLeuLysProIleGlyLeuTrpProLeuIleTyrSerHisThrSerLysLeuAsnLy 294713 : TGTTGAAACCGATCGGTCTTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAA : 294769 47 : nTyrValSerAsnIleThrIleValPheTyrAsnPheSerPheValPheAlaIleVal : 65 ! !:!!|||! ||| !|||!.!!::! !!..!!.!!! ! :!!|||!.!:!!||| sValLeuSerIleIleLeuIleAlaTrpCysThrLeuThrValLeuPheValLeuVal 294770 : AGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTG : 294826 66 : ProPheThrLeuTyrIleMetTyrAspAlaLysAspIleAsnAlaLysLeuArgSerC : 85 |||! ! !! !!:! !:!:!:! !!!..|||::::::... |||:!!!:! ! ProCysGlyTyrPheCysValPheHisValLysAsnValLysLeuLysMetLysLeuL 294827 : CCATGCGGATACTTCTGTGTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTC : 294886 86 : ysGlyLeuLeuAlaPheCysLeuThrAlaMetIleLysTyrLeuIleLeuAlaIleAr : 104 |||! !:!! !!:!! !:!! !:!!|||:!!!:!||| ! !|||!.!:!:!: euGlyProValLeuTyrSerMetLeuSerMetLeuArgTyrSerCysLeuValLeuLy 294887 : TGGGTCCGGTACTATACTCTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAA : 294943 105 : gArgProLysIleGlnLeuCysIleGluTyrIleLysTyrAspTrpTrpGlnValThr : 123 !! !||| !.!!:!!! !||||||||| !!|||:!! !!|||||| ! !:!! ! sThrProAlaPheLysHisCysIleGluAspIleGluAsnAspTrpLysLeuIleAsp 294944 : AACGCCCGCGTTCAAGCATTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGAT : 295000 124 : PheValSerAspArgGluMetMetLeuLysTyrAlaValThrGlyArgAsnLeuThrI : 143 ! !..! !!|||! !!!:|||:!!||| !!|||:!!..! !!:!!..:!!|||: AsnProGluHisArgAlaIleMetIleLysAsnAlaMetValThrGlnArgMetThrV 295001 : AATCCGGAACACCGAGCGATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCG : 295060 144 : leIleGlyAlaLeuPheMetTyrGlyAlaGlyIleIleTyrTyrAlaIleLeu<->Il : 161 !! ! !.!!:!!.!.!!:|||.!!:!!!.!:!: |||:!!||||||::: .. alAlaPheThrIleIleIleTyrSerSerAlaValSerTyrHisAlaIleValProPh 295061 : TCGCTTTTACTATTATAATCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatt : 295117 162 : eProIleAsnThrIleLysIleIleThrAsnGlnThrLeuArgProValValTyrPro : 180 . |||...:!::!!! !! ! !|||.!.|||:!!||| !!:!! ! !||| ePheSerAsnAlaLeuGluAsnLysLysAsnAsnThrIleArgAlaLeuProIlePro 295118 : tttttcaaacgctTTGGAGAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCT : 295174 181 : IleTyrSerGlnPheGlyAspValGlnAsnSerProLysTyrGluIleVal : 197 !|||..! !|||! !|||!.! ! ::!||||||! |||||||||:!! GlyTyrGluLeuPheValAspAlaTyrSerSerProThrTyrGluIleIle 295175 : GGCTACGAGTTATTCGTAGACGCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: CbirOr33 10 197 . KQ414889.1 294654 295227 + 199 M 33 99 G 0 9 M 117 351 G 0 3 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294655 295227 199 + . gene_id 17 ; sequence CbirOr33 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294655 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294655 295227 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294655 295227 199 + . alignment_id 17 ; Query CbirOr33 ; Align 294655 11 99 ; Align 294763 44 351 ; Align 295117 161 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 187 Query range: 301 -> 398 Target range: 280091 -> 280456 302 : AspTrpGlnLysAsnAspLysValGlyValValSerTyrSerLeuLeuPheValSerP : 321 !!:|||:!!:!!|||||| :!!|||..! !!!!!|||! !:!!!!!.!!:!!|||! GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerL 280092 : GAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTT : 280149 322 : heCysPheAsnValTyrIleLeuCysHisIleGlyGluLeuLeuMetGluLysSerSe : 340 !. |||||||||!:!|||||||||:!!|||||||||:!!||| |||::: euThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGlnValPh 280150 : TAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggtatt : 280206 341 : rGlnIleGlySerValCysTyr{Me} >>>> Target Intron 1 >>>> {t} : 348 |||...|||..! !|||{ } 74 bp {!} ePheIleSerSerThrIleTyr{**}-+ +-{*} 280207 : tttcatttcttcaacGATCTAT{TA}tt.........................at{G} : 280306 349 : IleAsnTrpTyrGlnIleSerProLysLeuValArgSerIleIleMetIleIleAlaM : 368 |||:!!||||||!:::!: !! !||| !!.!!:!.!!:!:|||:!!|||.!!|||: IleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaV 280307 : ATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCG : 280364 369 : etSerSerHisProThrLysLeuThrAlaGlyGlyMetValAspLeuSerLeuSerTh : 387 !!|||!:! ! !!! !||||||||||||||| !!!::!!|||||||||||||||!: alSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSe 280365 : TGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAG : 280421 388 : rPheGlyAsnValMetLysThrSerIleAlaTyr : 398 !||| !!!:!|||! ! ! !!:!:!!:!!||| rPheCysSerValSerIleIleAsnLeuSerTyr 280422 : CTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 280456 vulgar: CbirOr33 301 398 . KQ414889.1 280091 280456 + 187 M 46 138 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280092 280456 187 + . gene_id 18 ; sequence CbirOr33 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280092 280231 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280231 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280232 280233 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 280232 280305 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280304 280305 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 280306 280456 . + . KQ414889.1 exonerate:protein2genome:local exon 280306 280456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280092 280456 187 + . alignment_id 18 ; Query CbirOr33 ; Align 280092 302 138 ; Align 280307 349 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 332 -> 394 Target range: 224481 -> 224667 333 : GluLeuLeuMetGluLysSerSerGlnIleGlySerValCysTyrMetIleAsnTrpT : 352 ..!|||!!!.!. ::: ...:::||||||..!|||! |||||||||:!!|||| SerLeuPhePheProGlnCysGluLysIleGlyGlnValSerTyrMetIleAspTrpT 224482 : TCGCTATTTTTTCCtcagtgtgaaaaaattggacaAGTGTCGTACATGATCGACTGGT : 224539 353 : yrGlnIleSerProLysLeuValArgSerIleIleMetIleIleAlaMetSerSerHi : 371 ||!:!:!:!!! !!!. ! !! !!!! !|||:!!|||||||||||||||!:! yrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnSe 224540 : ATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGATGTCCAATTC : 224596 372 : sProThrLysLeuThrAlaGlyGlyMetValAspLeuSerLeuSerThrPheGlyAsn : 390 ! !!! !|||||||||||||||..!||||||!!:|||!!!|||!!!|||||||||:!! rSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThrPheGlyAsp 224597 : TTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACTTTCGGTGAC : 224653 391 : ValMetLysThr : 394 |||! ! ||| ValSerIleThr 224654 : GTAAGTATCACA : 224667 vulgar: CbirOr33 332 394 . KQ414889.1 224481 224667 + 137 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224482 224667 137 + . gene_id 19 ; sequence CbirOr33 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224482 224667 . + . KQ414889.1 exonerate:protein2genome:local exon 224482 224667 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224482 224667 137 + . alignment_id 19 ; Query CbirOr33 ; Align 224482 333 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 333 -> 391 Target range: 214848 -> 215022 334 : LeuLeuMetGluLysSerSerGlnIleGlySerValCysTyrMetIleAsnTrpTyrG : 353 :!!:!!:!::!!:!!!!!!.!:!!:!!|||..!|||! |||||||||.!.||||||! IleMetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrA 214849 : ATTATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACC : 214906 354 : lnIleSerProLysLeuValArgSerIleIleMetIleIleAlaMetSerSerHisPr : 372 :!:!: !! !!!. ! !! !!!! !|||:!!|||!!:|||||||||!:! ! rgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSe 214907 : GATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATC : 214963 373 : oThrLysLeuThrAlaGlyGlyMetValAspLeuSerLeuSerThrPheGlyAsnVal : 391 !..!|||!!!|||||||||..!||||||!!:||||||:!!|||||||||.!!!:!||| rValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214964 : CGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215020 vulgar: CbirOr33 333 391 . KQ414889.1 214848 215022 + 131 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214849 215022 131 + . gene_id 20 ; sequence CbirOr33 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214849 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214849 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214849 215022 131 + . alignment_id 20 ; Query CbirOr33 ; Align 214849 334 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 341 -> 391 Target range: 206251 -> 206401 342 : IleGlySerValCysTyrMetIleAsnTrpTyrGlnIleSerProLysLeuValArgS : 361 :!:|||! !..!! !! !! !:!:|||||||||!:::!! !! !!:!! !!.!|||| ValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgS 206252 : GTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCT : 206309 362 : erIleIleMetIleIleAlaMetSerSerHisProThrLysLeuThrAlaGlyGlyMe : 380 ||!!:|||:!!|||||||||||||||!:!:!!|||! !||||||||||||||| !|| erMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMe 206310 : CTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAAT : 206366 381 : tValAspLeuSerLeuSerThrPheGlyAsnVal : 391 | !!!!::!!||||||:!!!:!||| !:!!||| tPheGluMetSerLeuAlaSerPheThrAspVal 206367 : GTTCGAAATGTCTTTAGCTAGTTTCACCGATGTA : 206401 vulgar: CbirOr33 341 391 . KQ414889.1 206251 206401 + 124 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206252 206401 124 + . gene_id 21 ; sequence CbirOr33 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206252 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206252 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206252 206401 124 + . alignment_id 21 ; Query CbirOr33 ; Align 206252 342 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 340 -> 391 Target range: 219518 -> 219671 341 : GlnIleGlySerValCysTyrMetIleAsnTrpTyrGlnIleSerProLysLeuValA : 360 :::||||||...::: |||||||||.!.||||||!:!:!:!!! !||| ! !! LysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysLysL 219519 : aaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAAAGC : 219576 361 : rgSerIleIleMetIleIleAlaMetSerSerHisProThrLysLeuThrAlaGlyGl : 379 !!!!! !:!!:!!! !||||||||||||!:! ! !!! !|||||||||||||||.. euTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAs 219577 : TCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGGAAA : 219633 380 : yMetValAspLeuSerLeuSerThrPheGlyAsnVal : 391 !||||||!!:||||||:!!||||||||| !:!!||| nMetValGluLeuSerIleSerThrPheThrAspVal 219634 : TATGGTCGAATTGTCTATCAGCACTTTTACCGACGTG : 219671 vulgar: CbirOr33 340 391 . KQ414889.1 219518 219671 + 123 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219519 219671 123 + . gene_id 22 ; sequence CbirOr33 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219519 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219519 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219519 219671 123 + . alignment_id 22 ; Query CbirOr33 ; Align 219519 341 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 340 -> 391 Target range: 230253 -> 230406 341 : GlnIleGlySerValCysTyrMetIleAsnTrpTyrGlnIleSerProLysLeuValA : 360 :!!:!!|||..! !! |||||||||.!.||||||!:!:!!!!! !!!. ! !! LysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyAsnLysLysL 230254 : AAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAAACAAGAAGC : 230311 361 : rgSerIleIleMetIleIleAlaMetSerSerHisProThrLysLeuThrAlaGlyGl : 379 !!!! !|||:!!|||||||||||||||!:! ! !!||||||!!!|||||||||.. euCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheThrAlaGlyAs 230312 : TCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTACAGCAGGAAA : 230368 380 : yMetValAspLeuSerLeuSerThrPheGlyAsnVal : 391 !||||||!!:||||||:!!!:!||||||.!!:!!||| nMetValGluLeuSerValAsnThrPheSerAspVal 230369 : CATGGTTGAATTATCCGTAAACACTTTCAGCGACGTA : 230406 vulgar: CbirOr33 340 391 . KQ414889.1 230253 230406 + 121 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230254 230406 121 + . gene_id 23 ; sequence CbirOr33 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230254 230406 . + . KQ414889.1 exonerate:protein2genome:local exon 230254 230406 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230254 230406 121 + . alignment_id 23 ; Query CbirOr33 ; Align 230254 341 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 333 -> 394 Target range: 211758 -> 211941 334 : LeuLeuMetGluLysSerSerGlnIleGlySerValCysTyrMetIleAsnTrpTyrG : 353 |||:!!.!. !:!!!!! !:!!:!!|||..! !! !|||||||||:!!||||||! LeuIlePhe***GlnThrValLysValGlyGluLysSerTyrMetIleAspTrpTyrA 211759 : CTCATATTTTGACAGACAGTAAAAGTTGGAGAAAAGTCTTACATGATCGACTGGTATC : 211816 354 : lnIleSerProLysLeuValArgSerIleIleMetIleIleAlaMetSerSerHisPr : 372 :!!!: !! !||| !! ! ! !:!! !:!!!!:|||:!!|||||| ! ! rgMetProGlyLysLysGlyLeuValValProLeuMetIleSerMetSerHisSerTh 211817 : GAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGATGATCTCCATGTCACATTCGAC : 211873 373 : oThrLysLeuThrAlaGlyGlyMetValAspLeuSerLeuSerThrPheGlyAsnVal : 391 !||||||:!!|||||||||..!:!::!!! !||||||:!!|||!:!||||||:!!||| rThrLysIleThrAlaGlyAsnLeuIleValLeuSerIleSerSerPheGlyAspVal 211874 : CACCAAAATCACCGCTGGCAATCTCATCGTTCTTTCAATCAGTAGTTTCGGTGACGTA : 211930 392 : MetLysThr : 394 ! ||| SerValThr 211931 : AGtgttaca : 211941 vulgar: CbirOr33 333 394 . KQ414889.1 211758 211941 + 116 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 211759 211941 116 + . gene_id 24 ; sequence CbirOr33 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 211759 211941 . + . KQ414889.1 exonerate:protein2genome:local exon 211759 211941 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 211759 211941 116 + . alignment_id 24 ; Query CbirOr33 ; Align 211759 334 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 1037 Query range: 15 -> 414 Target range: 289708 -> 293254 16 : AsnAlaHisTyrGluAspAspValArgTyrThrMetGlnLeuCysGlyTrpValLeuL : 35 |||! !!.!|||||| |||:!!|||||||||.!.:!!|||||| !|||:!!|||| AsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleLeuL 289709 : AACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCTTGA : 289766 36 : ysProIleGlyMetTrpTyrLeuIleGlnAspSerCysSerArgAsnGluLysIleVa : 54 ||||||||||||||!:: !!!!:!! ..! !!...||||||..!|||::!! !. ysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgThrAl 289767 : AACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGC : 289823 55 : lSerIleAlaLeuIleValValCysPheSerAlaLeuCysPheValLeuIleProSer : 73 !|||:!: !||||||:!!||||||! !||| !||| |||:!!:!!:!!|||! ! aSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValProPhe 289824 : GTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCGTTC : 289880 74 : GlyLeuTyrLeuPheLeuValLysGlnAspValTyrAlaLeuIleLysLeuLeuGlyP : 93 .!!! !:!!:!!.!.!!! ! ! .!.|||:!! !!.!!!!!:!!||| !||||||| SerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuGlyP 289881 : AGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCGGAC : 289940 94 : roValIlePheCysLeuThrSerThrIleLysTyrCysTyrLeuGlyThrArgGlyAl : 112 ||:!!! ||||||||||||!!! !.!!||||||||||||!!!.!!! !!:!|||:! roLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGlySe 289941 : CGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGGTTC : 289997 113 : aAlaPheGlyArgCysLeuArgHisValThrAsnAspTrpArgLeuValArgAspGln : 131 !|||.!!|||||||||:!!!:!|||:!! !!..||||||!:!:!!:!!||||||:!! rAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAspGlu 289998 : AGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGACGAG : 290054 132 : AspHisArgGluIleMetLeuArgGlyAlaLeuIleGlyArgArgLeuThrMetLeuC : 151 |||||||||! |||||||||||| !!.! !!!:.!!|||!.!|||! !! |||| AspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysLeuC 290055 : GATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAACTGT : 290114 152 : ysAlaIlePheLeuTyrThrGlyGlyLeuSerTyrHisThrIleLeuProLeuSerSe : 170 |||||||||||||||||! !|||||||||||||||:!!|||:!!:!!||||||! !|| ysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPheSe 290115 : GCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTTCTC : 290171 171 : rLysGlnAsnIleSerGluAsnPheThrSerArgArgValProHisThrTyrProGly : 189 ||||:!!!:!:!:!:!! ||| ! |||! !||| |||! |||||||||||| rLysLysSerValAsnGlyAsnValThrIleArg------ProLeuThrTyrProGly 290172 : GAAGAAGAGCGTGAACGGTAACGTGACTATCAGA------CCTCTAACTTATCCCGGT : 290222 190 : TyrAspLeuTrpPheAspProGluAlaSerProAlaTyrGluIleValPheCysValH : 209 |||!!: !!::|||||| !:!! !|||||||||||||||||||||||||||:!!| TyrGluGluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetH 290223 : TACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGC : 290282 210 : isCysValPheAlaLeuIleThrTyrAsnIleThrThrGlyGlyCysGlyLeuAlaAl : 228 ||||||||!:!!.!:!!|||||| |||||||||! !!.!!.!! !.!!|||.!!.! isCysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrTh 290283 : ACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGAC : 290339 229 : aIlePheValThrHisAlaCysGlyGlnValGlnIleLeuMetIleGlnMetSerAsp : 247 !||||||!.!||||||.!!|||||||||:!!:!!|||! !! !! !:!:!!..!||| rIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAsp 290340 : GATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGAT : 290396 248 : LeuValGlu<->GlyLysArgSerLysGlyThrValGlnAsnArgLeuSerValIleA : 266 |||..!:!! |||! !! !! !:!! ! !|||...:!!||||||:!!|||:!!! LeuThrLysArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValValV 290397 : CTGACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTG : 290456 267 : laLysHisHisValArgValLeu{Ar} >>>> Target Intron 1 >>>> {g : 274 .!!.. !||||||..!:!!|||{!:} 655 bp {! alSerGlyHisValGluIleLeu{Ly}++ ++{s 290457 : TGAGCGGTCACGTGGAGATCTTG{AA}gt.........................ag{A : 291137 275 : }PheSerAlaSerValAspGluValLeuArgGluIleCysLeuMetGluLeuLeuAla : 293 }|||!!! !! !:!!!!:...!.!|||!.!||||||! !|||!!:|||:!!:!!!.! }PheThrArgMetIleGluSerAlaLeuHisGluIlePheLeuIleGluValIleVal 291138 : }TTCACGAGGATGATCGAAAGCGCGTTGCATGAAATATTCTTGATAGAAGTAATAGTA : 291192 294 : SerCysLeuThrIleCysLeuLeuGluTyrTyrCysIleMet >>>> Target In : 308 ||| !:!! !:!!||||||:!!|||||| !! !!:||| 132 SerThrValLeuLeuCysLeuIleGluTyrLeuLeuMetMet++ 291193 : TCCACTGTGTTACTATGCTTGATCGAATATCTCTTAATGATGgt.............. : 291239 309 : tron 2 >>>> GluTrpGluAsnSerAspAlaValAlaIleLeuThrTyrPheIle : 322 bp |||||||||!:!||||||:!!:!!!.!|||||||||||| !!! ! ++GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThr 291240 : ...........agGAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACT : 291411 323 : LeuLeuIleSerPheMetPheAsnIleLeuIlePheCysTyrIleGlyGluLeuLeuM : 342 ||||||! !||||||! ||||||||||||||||||||||||:!!||||||||||||: LeuLeuThrSerPheThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuL 291412 : CTCCTCACTTCTTTCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTC : 291471 343 : etGlnGln >>>> Target Intron 3 >>>> TyrSerThrValAlaSerAla : 351 !: !||| 913 bp !||| !:!!||| !||| euGlyGln++ ++GlySerGluIleAlaHisAla 291472 : TTGGACAGgt.........................agGGTAGTGAAATCGCGCACGCT : 292411 352 : ValTyrGlyIleAsnTrpTyrAspLeuSerGlyLysLysAlaLeuAspLeuLysLeuI : 371 !|||! !! !.!.||||||:!!||| !! !!::!||||||! !|||:!! |||: SerTyrAspThrGluTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuV 292412 : TCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGG : 292471 372 : leIleAlaMetSerArgTyrProValLysLeuThrAlaGlyLysPheValAspLeuSe : 390 !::!!|||!!:!!!!:!:!!|||:!!||||||||||||||||||.!. !!! !||||| alLeuAlaIleThrLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSe 292472 : TGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTC : 292528 391 : rLeuAsnThrPheGlyAla >>>> Target Intron 4 >>>> ValLeuArgT : 400 ||||||||||||||||||| 652 bp ||||||!:!: rLeuAsnThrPheGlyAla++ ++ValLeuLysS 292529 : GTTGAACACTTTTGGCGCTgt.........................agGTGCTGAAAT : 293210 401 : hrSerValValTyrLeuAsnLeuLeuArgThrValThrGluTyr : 414 !!||||||||||||:!!|||:!!||||||||||||||||||!:! erSerValValTyrMetAsnMetLeuArgThrValThrGluPhe 293211 : CGTCGGTAGTTTACATGAACATGCTACGAACCGTCACTGAATTC : 293254 vulgar: CbirOr30 15 414 . KQ414889.1 289708 293254 + 1037 M 166 498 G 2 0 M 67 201 G 0 3 M 23 69 S 0 2 5 0 2 I 0 651 3 0 2 S 1 1 M 33 99 5 0 2 I 0 128 3 0 2 M 37 111 5 0 2 I 0 909 3 0 2 M 52 156 5 0 2 I 0 648 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289709 293254 1037 + . gene_id 1 ; sequence CbirOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 289709 290481 . + . KQ414889.1 exonerate:protein2genome:local exon 289709 290481 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 290482 290483 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 290482 291136 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 291135 291136 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 291137 291236 . + . KQ414889.1 exonerate:protein2genome:local exon 291137 291236 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291237 291238 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291237 291368 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 291367 291368 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292548 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292548 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 292549 292550 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 292549 293200 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 293199 293200 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 293201 293254 . + . KQ414889.1 exonerate:protein2genome:local exon 293201 293254 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289709 293254 1037 + . alignment_id 1 ; Query CbirOr30 ; Align 289709 16 498 ; Align 290207 184 201 ; Align 290411 251 69 ; Align 291138 275 99 ; Align 291369 308 111 ; Align 292393 345 156 ; Align 293201 397 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 641 Query range: 120 -> 397 Target range: 304413 -> 305783 121 : ValThrAsnAspTrpArgLeuValArgAspGlnAspHisArgGluIleMetLeuArgG : 140 :!!:!!!.!! !::..!! !|||..!..!! !!||||||!!:||||||!:! LeuSerThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysT 304414 : CTCTCTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAAT : 304471 141 : lyAlaLeuIleGlyArgArgLeuThrMetLeuCysAlaIlePheLeuTyrThrGlyGl : 159 !!.!! !!!:||||||!.!||||||!!::!!||||||||||||:!!||||||||||| yrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGl 304472 : ACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGG : 304528 160 : yLeuSerTyrHisThrIleLeuProLeuSerSerLysGlnAsnIleSerGluAsnPhe : 178 | !! !|||||||||:!!:!!! !!!!:!!!!! ! ! !!:!:..!||| !:! yThrIleTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGlu---Tyr 304529 : CACCATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAG---TAT : 304582 179 : ThrSerArgArgValProHisThrTyrProGlyTyrAspLeuTrpPheAspProGluA : 198 !.! !!! !! ! !|||! !..!|||||| !|||..! !! |||||| !:!!. AsnArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnT 304583 : AATCGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAA : 304642 199 : laSerProAlaTyrGluIleValPheCysValHisCysValPheAlaLeuIleThrTy : 217 !!|||||| !||||||:!:|||!:!! !|||||||||:!!! !!.!! !:!!! !|| hrSerProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTy 304643 : CAAGCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTA : 304699 218 : rAsnIleThrThrGlyGlyCysGlyLeuAlaAlaIlePheValThrHisAlaCysGly : 236 |::!||||||.!!|||!.!|||||||||||||||:!!|||!.!||||||||||||||| rSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGly 304700 : TTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGA : 304756 237 : GlnValGlnIleLeuMetIleGlnMetSerAspLeuValGluGlyLysArgSerLysG : 256 |||:!!.!.|||:!!||| !!:!:!!.!!|||||||||.!..!!|||..!||| . GlnIleAspIleValMetSerArgLeuGlyAspLeuValAsnSerLysGluSer---S 304757 : CAAATTGATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCA---T : 304813 257 : lyThrValGlnAsnArgLeuSerValIleAlaLysHisHisValArgValLeu{Ar} : 274 .! !:!!.!.!!.||||||! !! !|||!.!:!!||||||:!!|||:!!|||{||} erAspLeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIleLeu{Ar}+ 304814 : CTGATTTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTA{AG}g : 304869 275 : >>>> Target Intron 1 >>>> {g}PheSerAlaSerValAspGluValLeu : 283 70 bp {|}|||||||||! !|||.!. !|||||| + ++{g}PheSerAlaIleValGlnThrValLeu 304870 : t.........................ag{A}TTCTCGGCAATAGTGCAAACAGTGTTG : 304964 284 : ArgGluIleCysLeuMetGluLeuLeuAlaSerCysLeuThrIleCysLeuLeuGluT : 303 !:!|||:!!|||!!!:!!|||!!!:!!!.!||| !||| !|||||||||||||||| GlnGluValCysPheLeuGluPheIleGlySerThrLeuLeuIleCysLeuLeuGluT 304965 : CAAGAAGTATGCTTCTTGGAATTCATTGGTTCTACCTTACTGATATGTCTACTTGAAT : 305024 304 : yrTyrCysIleMet >>>> Target Intron 2 >>>> GluTrpGluAsnSer : 312 |||||||||||! ! 62 bp !!:||||||!:!||| yrTyrCysIleThr++ ++AspTrpGluSerSer 305025 : ACTACTGTATAACGgt.........................agGATTGGGAGAGCAGT : 305113 313 : AspAlaValAlaIleLeuThrTyrPheIleLeuLeuIleSerPheMetPheAsnIleL : 332 :!!.!!|||::!:!! !|||||| :!:|||||||||||| ! ! |||||||||! AsnThrValSerLeuThrThrTyrThrValLeuLeuIleSerValThrPheAsnIleP 305114 : AATACCGTTAGTCTTACAACATATACAGTGTTACTGATATCTGTAACATTTAATATAT : 305173 333 : euIlePheCysTyrIleGlyGluLeuLeuMetGlnGln >>>> Target Intron : 345 !!|||!!.|||||||||||||||:!!||||||:!!:!! 413 bp heIleLeuCysTyrIleGlyGluIleLeuMetGluLys++ 305174 : TCATATTATGCTACATTGGTGAGATTCTTATGGAAAAGgt.................. : 305214 346 : 3 >>>> TyrSerThrValAlaSerAlaValTyrGlyIleAsnTrpTyrAspLeuS : 361 !|||!:!|||!.!! !:!! !!:! !|||!:!|||||| !!||| ++SerSerSerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuP 305215 : .......agAGCAGTAGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTAC : 305673 362 : erGlyLysLysAlaLeuAspLeuLysLeuIleIleAlaMetSerArgTyrProValLy : 380 !! !|||! ! !! !! !|||! ||||||||||||||||||!!! !!|||!.!|| roThrLysThrIleHisGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLy 305674 : CGACTAAGACGATACATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAA : 305730 381 : sLeuThrAlaGlyLysPheValAspLeuSerLeuAsnThrPheGlyAlaVal : 397 |:!!!:!||||||||| ! |||||||||||||||::!||||||||| !||| sIleSerAlaGlyLysValValAspLeuSerLeuSerThrPheGlyAsnVal 305731 : AATCAGTGCTGGTAAAGTAGTTGATTTATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: CbirOr30 120 397 . KQ414889.1 304413 305783 + 641 M 56 168 G 1 0 M 77 231 G 1 0 M 18 54 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 37 111 5 0 2 I 0 409 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304414 305783 641 + . gene_id 2 ; sequence CbirOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 304414 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304414 304868 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 1 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304414 305783 641 + . alignment_id 2 ; Query CbirOr30 ; Align 304414 121 168 ; Align 304582 178 231 ; Align 304813 256 54 ; Align 304940 275 99 ; Align 305101 308 111 ; Align 305625 345 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 613 Query range: 18 -> 412 Target range: 226912 -> 230518 19 : TyrGluAspAspValArgTyrThrMetGlnLeuCysGlyTrpValLeuLysProIleG : 38 |||:!!!!: !!:!!!.! !:!!!:|||||| ! !!|||:!!|||||||||:!!| TyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuG 226913 : TATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCG : 226970 39 : lyMetTrpTyrLeuIleGlnAspSerCysSerArgAsnGluLysIleValSerIleAl : 57 ||!!:||| ! ! !:: ! ||| ||||||! ! !!:! ! !!||| lyIleTrpProSerSerArgLysSer---SerArgIleGlyArgCysPheSerTrpLe 226971 : GTATCTGGCCGTCGTCGCGCAAAAGC---TCTCGAATAGGAAGATGTTTCTCCTGGTT : 227024 58 : aLeuIleValValCysPheSerAlaLeuCysPheValLeuIleProSerGlyLeuTyr : 76 !:!! ! !!:!!|||!:!:!! !:!! !!|||! !|||:!! !!|||||||||||| uMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyr 227025 : GATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTAC : 227081 77 : LeuPheLeuValLysGlnAspValTyrAlaLeuIleLysLeuLeuGlyProValIleP : 96 :!! !!|||! ! !:!!! !!.!||| ! !:!:|||:!!:!!||||||:!! !| ValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerP 227082 : GTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCT : 227141 97 : heCysLeuThrSerThrIleLysTyrCysTyrLeuGlyThrArgGlyAlaAlaPheGl : 115 ||! ! !! !||| !:!!||||||! ! ||| ! !!.!! !! !! !.!! hePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLe 227142 : TCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCT : 227198 116 : yArgCysLeuArgHisValThrAsnAspTrpArgLeuValArgAspGlnAspHisArg : 134 !..!|||:!!..!!..:!!! ! ||||||!:! !:!!||| !!! !!!: !!||| uGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArg 227199 : CGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGA : 227255 135 : GluIleMetLeuArgGlyAlaLeuIleGlyArgArgLeuThrMetLeuCysAlaIleP : 154 .!.:!:|||:!!! ! !|||! ! !||||||!:!|||! !! :!!|||.!!.!!| AsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPheP 227256 : AACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTT : 227315 155 : heLeuTyrThrGlyGlyLeuSerTyrHisThrIleLeuProLeuSerSerLysGlnAs : 173 ||:!!!:!!::... ::: ::::::! !:!!:!!|||:!!!:!:!! !... heValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerVa 227316 : TCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGT : 227372 174 : nIleSerGluAsnPheThrSerArgArgValProHisThrTyrProGlyTyrAspLeu : 192 ! !!!!|||:!! !.! !!!! !:!!! ! !!!:!||| ! ! :!! lAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIle 227373 : TGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATC : 227429 193 : TrpPheAspProGluAlaSerProAlaTyrGluIleValPheCysValHisCysValP : 212 !||| !... !|||||| ! !!|||||| !!|||! |||!!.! !||| IleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValT 227430 : ATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAA : 227489 213 : heAlaLeuIleThrTyrAsnIleThrThrGlyGlyCysGlyLeuAlaAlaIlePheVa : 231 !.!:!!:!: !:!!..!:!!|||:!!!.!!.!|||.!!:!!||||||:!:.!!!. hrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAl 227490 : CAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGC : 227546 232 : lThrHisAlaCysGlyGlnValGlnIleLeuMetIleGlnMetSerAspLeuValGlu : 250 !..!|||||||||||||||:!!:!!:!:|||:!! ! !:!!.!! !!|||:!!!!: aValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAsp 227547 : GGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGAC : 227603 251 : GlyLysArgSerLysGly<->ThrValGlnAsnArgLeuSerValIleAlaLysHisH : 269 |||!:! !..!! !.!! |||:!!.!.:!!|||:!!:!! !|||!.!! |||| GlyArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValThrHisH 227604 : GGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACC : 227663 270 : isValArgValLeu{Ar} >>>> Target Intron 1 >>>> {g}PheSerAl : 277 ||||||||:!!|||{!.} 396 bp {!}||| !|| isValArgIleLeu{As}++ ++{n}PheLeuAl 227664 : ACGTTCGAATATTG{AA}gt.........................ag{C}TTTCTGGC : 228083 278 : aSerValAspGluValLeuArgGluIleCysLeuMetGluLeuLeuAlaSerCysLeu : 296 | !:!!!!::!!..!:!!!:!:!!|||..!!!!:!:|||!!!|||!.!!!! :!! aLeuIleGluLysThrMetGlnGlnIleAlaPheValGluPheLeuGlyCysThrIle 228084 : CCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGTACAATA : 228140 297 : ThrIleCysLeuLeuGluTyrTyrCysIleMet >>>> Target Intron 2 >> : 308 ! !:!:||||||:!!||||||||| !|||! ! 72 bp IleLeuCysLeuIleGluTyrTyrIleIleThr++ 228141 : ATTCTGTGCCTCATCGAGTATTACATCATAACGgt....................... : 228178 309 : >> GluTrpGluAsnSerAspAlaValAlaIleLeuThrTyrPheIleLeuLeuIle : 325 ||||||.!. !.!!!: !..! ! !:!!||||||! ||||||:!! ++GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeu 228179 : ..agGAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTA : 228299 326 : SerPheMetPheAsnIleLeuIlePheCysTyrIleGlyGluLeuLeuMetGlnGln : 345 ||||||! |||||||||...|||||||||||||||||||||:!!:!! :!!!!. SerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluHis+ 228300 : TCCTTTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACg : 228359 346 : >>>> Target Intron 3 >>>> TyrSerThrValAlaSerAlaValTyrGly : 354 1889 bp ! !!!!! !|||!.!..! ! !||| ! + ++CysArgLysValGlyGluLysSerTyrMet 228360 : t.........................agTGCAGAAAAGTCGGCGAAAAGTCGTACATG : 230275 355 : IleAsnTrpTyrAspLeuSerGlyLysLysAlaLeuAspLeuLysLeuIleIleAlaM : 374 |||.!.|||||| |||!!!|||!!.||| !||| !! !! ||||||||||||| IleGluTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaM 230276 : ATCGAATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCA : 230335 375 : etSerArgTyrProValLysLeuThrAlaGlyLysPheValAspLeuSerLeuAsnTh : 393 |||||!.!! ! !!..!|||!!!|||||||||!!..!.|||!!:||||||:!!||||| etSerAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnTh 230336 : TGTCCAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACAC : 230392 394 : rPheGlyAla >>>> Target Intron 4 >>>> ValLeuArgThrSerValV : 403 ||||.!!! ! 67 bp |||:!!!:!||||||:!!! rPheSerAsp++ ++ValValLysThrSerMetG 230393 : TTTCAGCGACgt.........................agGTCGTTAAAACGTCCATGG : 230489 404 : alTyrLeuAsnLeuLeuArgThrValThr : 412 !!:!||||||:!!|||||||||:!!||| lyPheLeuAsnMetLeuArgThrLeuThr 230490 : GTTTCTTAAACATGCTACGAACACTGACG : 230518 vulgar: CbirOr30 18 412 . KQ414889.1 226912 230518 + 613 M 28 84 G 1 0 M 209 627 G 0 3 M 17 51 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226913 230518 613 + . gene_id 3 ; sequence CbirOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226913 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226913 227679 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230403 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230403 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 230404 230405 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 230404 230470 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 230469 230470 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230471 230518 . + . KQ414889.1 exonerate:protein2genome:local exon 230471 230518 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226913 230518 613 + . alignment_id 3 ; Query CbirOr30 ; Align 226913 19 84 ; Align 226997 48 627 ; Align 227627 257 51 ; Align 228077 275 99 ; Align 228248 308 111 ; Align 230248 345 156 ; Align 230471 397 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 479 Query range: 24 -> 412 Target range: 256652 -> 258738 25 : TyrThrMetGlnLeuCysGlyTrpValLeuLysProIleGlyMetTrpTyrLeuIleG : 44 |||!:!:!:|||||| ! !!||| !!||||||||||||||| ||| ! ! !. TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrp---ProProS 256653 : TACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGG---CCACCCT : 256707 45 : lnAspSerCysSerArgAsnGluLysIleValSerIleAlaLeuIleValValCysPh : 63 .!...||| !!!!! ! !|||::!! !|||||||||!.!|||! !:!!||||||!: erSerSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTy 256708 : CGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTA : 256764 64 : eSerAlaLeuCysPheValLeuIleProSerGlyLeuTyrLeuPheLeuValLysGln : 82 !.!!:!!:!!! |||..!|||||||||!!! !|||:!!:!!||||||! ! ! .!. rGlySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAsp 256765 : TGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGAC : 256821 83 : AspValTyrAlaLeuIleLysLeuLeuGlyProValIlePheCysLeuThrSerThrI : 102 ..! !!||| :::||| ...||||||:!!! ! !!! :!!! !||| ! SerPheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysA 256822 : AGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTG : 256881 103 : leLysTyrCysTyrLeuGlyThrArgGlyAlaAlaPheGlyArgCysLeuArgHisVa : 121 !!!.||| ! ||| ! !!:!||| !! !.!. !! !|||:!!..!|||:! laAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIl 256882 : CCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATAT : 256938 122 : lThrAsnAspTrpArgLeuValArgAspGlnAspHisArgGluIleMetLeuArgGly : 140 ! !!..|||||||||:!!|||||| :!! ! !!!:!:!!:!:|||:!!!:!..! eGluThrAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsn 256939 : AGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAAC : 256995 141 : AlaLeuIleGlyArgArgLeuThrMetLeuCysAlaIlePheLeuTyrThrGlyGlyL : 160 ||| !.!!|||||| !:!!.!!! !!!|||||| !.!!:!! ! !:!||| . AlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValP 256996 : GCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttt : 257055 161 : euSerTyrHisThrIleLeuProLeuSerSerLysGlnAsnIleSerGluAsnPheTh : 179 .. ::: ..! ! ! !!|||!:!!!!:!! !! ! ! !! !||| || heCysPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluTh 257056 : tctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAAC : 257112 180 : rSerArgArgValProHisThrTyrProGlyTyrAspLeuTrpPheAspProGluAla : 198 |!!!! ! ! ! !! !! ! !!! !||| ! ! !!!.:!! !!!: ! rThrIleValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGln 257113 : AACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAG : 257169 199 : SerProAlaTyrGluIleValPheCysValHisCysValPheAlaLeuIleThrTyrA : 218 ||||||.!! !!||||||||| !!! !:!!!!. ! !! :!!:!!|||.!! !! SerProThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrT 257170 : AGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTA : 257229 219 : snIleThrThrGlyGlyCysGlyLeuAlaAlaIlePheValThrHisAlaCysGlyGl : 237 .!! !|||..!.!! !! !.!!|||||||||:!!|||!.!|||||||||! !||||| hrSerThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGl 257230 : CTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCA : 257286 238 : nValGlnIleLeuMetIleGlnMetSerAspLeuValGluGlyLysArgSer<-><-> : 255 |:!! :!:|||||| !!!:!!!!!:!!!|||.!.! !..!|||!:! nLeuThrValLeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGlu 257287 : GTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggag : 257343 256 : LysGlyThrValGlnAsnArgLeuSerValIleAlaLysHisHisValArgValLeuA : 274 ||| !!.!:!:!!.!!||||||!.!:!!||||||:!!|||||||||| LysThrPheProPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeuA 257344 : aaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTGA : 257403 275 : rgPheSerAlaSerValAspGluValLeuArgGluIleCysLeuMetGluLeuLeuAl : 293 ||! ..! !!!!:!! !...|||:!! !!.!..!! !:!:...:!!:!! rg***AspPheCysIleIleSerValValTrpAsnPheGluArgValSerValIleIl 257404 : GGTAAGATTTTTGCATTATTTCCGTTGTGTGGAATTTCGAAAGGGTTTCTGTGATTAT : 257460 294 : aSerCys{L} >>>> Target Intron 1 >>>> {eu}ThrIleCysLeuLeu : 301 !! !...{!} 763 bp { !}!:: :::::: ePheAla{T}++ +-{yr}SerTyrSerValIle 257461 : TTTTGCG{T}gt.........................ac{AC}AGctattctgttatt : 258247 302 : GluTyrTyrCysIleMetGluTrpGluAsnSerAspAlaValAlaIleLeuThrTyrP : 321 |||||| ......||||||...!.....||| ::: :::|||| PheTyrTyr---PheGlnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrP 258248 : ttttattat---tttcaggaATGGTCTACGCaagatattcaaaatttgagttcgtaCT : 258304 322 : heIleLeuLeuIleSerPheMetPheAsnIleLeuIlePheCysTyrIleGlyGluLe : 340 ||!!::!!|||||||||... |||||||||...:::...|||||||||||||||:! heMetIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIl 258305 : TTATGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAAT : 258361 341 : uLeuMetGlnGln >>>> Target Intron 2 >>>> TyrSerThrValAlaS : 350 !|||! :!!||| 90 bp ! !!.!! !|||!.!. eLeuThrGluGln++ ++CysLysLysValGlyA 258362 : ATTAACAGAACAGgt.........................agTGCAAGAAAGTTGGCG : 258481 351 : erAlaValTyrGlyIleAsnTrpTyrAspLeuSerGlyLysLysAlaLeuAspLeuLy : 369 .!!.!|||||| !! !:!!|||||| !!||| !!! !|||!:! !|||||||||! spValValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIl 258482 : ACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAAT : 258538 370 : sLeuIleIleAlaMetSerArgTyrProValLysLeuThrAlaGlyLysPheValAsp : 388 |||:!!|||||| |||!!! !|||:!!:!!||||||||||||||| eLeuValIleAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePheHis 258539 : TTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcac : 258595 389 : LeuSerLeuAsnThrPheGlyAla >>>> Target Intron 3 >>>> ValLe : 398 ::!|||:!! !!||||||.!!! ! 69 bp |||:! MetSerIleTyrThrPheSerAsp++ ++ValIl 258596 : atGTCCATTTACACATTCAGCGATgt.........................agGTAAT : 258694 399 : uArgThrSerValValTyrLeuAsnLeuLeuArgThrValThr : 412 !!:!|||||| !!!.!|||||||||||||||||| !|||:!! eLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnValSer 258695 : AAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGTATCG : 258738 vulgar: CbirOr30 24 412 . KQ414889.1 256652 258738 + 479 M 16 48 G 1 0 M 213 639 G 0 6 M 41 123 S 0 1 5 0 2 I 0 759 3 0 2 S 1 2 M 8 24 G 1 0 M 39 117 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256653 258738 479 + . gene_id 4 ; sequence CbirOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256653 257469 . + . KQ414889.1 exonerate:protein2genome:local exon 256653 257469 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 257470 257471 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257470 258232 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258231 258232 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 258233 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258233 258375 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256653 258738 479 + . alignment_id 4 ; Query CbirOr30 ; Align 256653 25 48 ; Align 256701 42 639 ; Align 257346 255 123 ; Align 258235 297 24 ; Align 258259 306 117 ; Align 258466 345 156 ; Align 258691 397 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 445 Query range: 8 -> 274 Target range: 217126 -> 217924 9 : LysArgValSerGluValHisAsnAlaHisTyrGluAspAspValArgTyrThrMetG : 28 |||..! !||| ! !:!! !.!.|||||| ::::::... ::!!!:| LysGluGlnSerProArgThrAspTyrGluTyrGluLysAsnIleAsnLeuSerIleG 217127 : AAGGAACAATCCCCCAGAACCGACTACGAgtacgagaaaaatataaatctcaGTATCC : 217184 29 : lnLeuCysGlyTrpValLeuLysProIleGlyMetTrpTyrLeuIleGlnAspSerCy : 47 ||! ! ! !!|||:!!|||||||||!!:|||:!:||| ! !!:: !!! lnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnSerArg---ThrTh 217185 : AATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACTCACGT---ACCAC : 217238 48 : sSerArgAsnGluLysIleValSerIleAlaLeuIleValValCysPheSerAlaLeu : 66 !!!!|||::!..!||||||:!!! !! ! !:!!! !!.!:!!|||!:!.!! !:!! rThrArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIle 217239 : CACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTACGGTTTGATA : 217295 67 : CysPheValLeuIleProSerGlyLeuTyrLeuPheLeuValLysGlnAspValTyrA : 86 !!|||:!!!!!:!!|||!!!..!:!!|||:!!||||||! ! :!!|||:!!|||! SerPheLeuPheValProCysSerMetTyrValPheLeuGluValGluAspLeuTyrA 217296 : AGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAGATCTCTACG : 217355 87 : laLeuIleLysLeuLeuGlyProValIlePheCysLeuThrSerThrIleLysTyrCy : 105 ! !:!:||||||!!!||||||:!!|||||||||:!!! !:!! !:!!||||||! spLysLeuLysLeuPheGlyProLeuIlePheCysValMetAlaPheValLysTyrTy 217356 : ACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTA : 217412 106 : sTyrLeuGlyThrArgGlyAlaAlaPheGlyArgCysLeuArgHisValThrAsnAsp : 124 !! !||| !..!!.! !|||! !.!! !!..!|||:!!|||...:!! !...||| rSerLeuIleValHisLysAlaAspIleArgGluCysValArgArgIleGluArgAsp 217413 : CTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGAC : 217469 125 : TrpArgLeuValArgAspGlnAspHisArgGluIleMetLeuArgGlyAlaLeuIleG : 144 |||||| !|||||| !:!! ! !!|||||| |||:!! !..!||| !.!!| TrpArgAsnValArgCysGluLysAspArgGluAlaMetIleValAsnAlaAsnPheG 217470 : TGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTG : 217529 145 : lyArgArgLeuThrMetLeuCysAlaIlePheLeuTyrThrGlyGlyLeuSerTyrHi : 163 |||||!:!|||..!:!:||||||.!!.!!|||:!!|||!:!||| ::: |||:: lyArgLysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheValPheTyrTy 217530 : GCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcgttttttatta : 217586 164 : sThrIleLeuProLeuSerSerLysGlnAsnIleSerGluAsnPheThrSerArgArg : 182 : ! !:!!|||:!!||| ! !::!! !:!!||||||||| !.! !! ! ! rIleAlaIleProIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuThrPhe 217587 : catCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTT : 217643 183 : ValProHisThrTyrProGlyTyrAspLeuTrpPheAspProGluAlaSerProAlaT : 202 :!!||| ..!!:!||| ! ! ! ! .!!||| !!... !!!!|||.!! IleProLeuValPheProPheThrLysTyrIleIleAspThrArgTyrThrProThrA 217644 : ATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCTACGA : 217703 203 : yrGluIleValPheCysValHisCysValPheAlaLeuIleThrTyrAsnIleThrTh : 221 !!||||||||||||! !:!!!!.! :!! !!.! !:!:! !:!!...||||||:! snGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSe 217704 : ACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCACGTC : 217760 222 : rGlyGlyCysGlyLeuAlaAlaIlePheValThrHisAlaCysGlyGlnValGlnIle : 240 !!.!!.!|||.!!||||||||| !|||!.!..!|||||||||||||||:!!:!!:!: rAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGluVal 217761 : GGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTG : 217817 241 : LeuMetIleGlnMetSerAspLeuValGluGlyLysArgSer<->LysGlyThrValG : 259 ||||||! ! !:!!..! !!|||:!!!!:|||!:! !..! !..! !||||||. LeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgAlaAspMetSerAspThrValA 217818 : TTGATGAACTGGCTGCAACATTTAATCGACGGTAGAGCGGATATGAGCGATACTGTGG : 217877 260 : lnAsnArgLeuSerValIleAlaLysHisHisValArgValLeuArg : 274 !...!|||:!!:!! !|||!.!!..!!.|||||||||:!!|||!:! spGlyArgIleAlaSerIleValSerGlnHisValArgIleLeuLys 217878 : ATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTAAAG : 217924 vulgar: CbirOr30 8 274 . KQ414889.1 217126 217924 + 445 M 36 108 G 1 0 M 209 627 G 0 3 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217127 217924 445 + . gene_id 5 ; sequence CbirOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217127 217924 . + . KQ414889.1 exonerate:protein2genome:local exon 217127 217924 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217127 217924 445 + . alignment_id 5 ; Query CbirOr30 ; Align 217127 9 108 ; Align 217235 46 627 ; Align 217865 255 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 422 Query range: 21 -> 344 Target range: 232450 -> 234914 22 : AspValArgTyrThrMetGlnLeuCysGlyTrpValLeuLysProIleGlyMetTrpT : 41 ||| !..!|||!:!!!:|||:!! ! !!||| !!|||! !|||!!:||| ||| AspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpP 232451 : GACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGC : 232508 42 : yrLeuIleGlnAspSerCysSerArgAsnGluLysIleValSerIleAlaLeuIleVa : 60 ! !:!! !!!:!!! |||||| !:!!:!!:!!:!!:!!! ! !|||! !:! roArgValThrGluThr---SerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLe 232509 : CGCGTGTTACAGAGACC---TCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACT : 232562 61 : lValCysPheSerAlaLeuCysPheValLeuIleProSerGlyLeuTyrLeuPheLeu : 79 !..!||| !||| !:!! !! ! !:!!:!!|||!!! !|||!:!:!!.!.!!! uThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPhe 232563 : CACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTC : 232619 80 : ValLysGlnAspValTyrAlaLeuIleLysLeuLeuGlyProValIlePheCysLeuT : 99 ! ! ! !..!:!! ! ! ! !!!:|||! !:!!||||||:!!! ! !! !|||! GluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuM 232620 : GAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGA : 232679 100 : hrSerThrIleLysTyrCysTyrLeuGlyThrArgGlyAlaAlaPheGlyArgCysLe : 118 !.!! !:!:!!.||||||! !||| !.!!!:!!.! !! !.!! ! !|||:! etGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysVa 232680 : TGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGT : 232736 119 : uArgHisValThrAsnAspTrpArgLeuValArgAspGlnAspHisArgGluIleMet : 137 !..!!!.|||! !.!.||||||||| !|||!:! ! ! ! !||||||!!::!:||| lGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMet 232737 : GGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATG : 232793 138 : LeuArgGlyAlaLeuIleGlyArgArgLeuThrMetLeuCysAlaIlePheLeuTyrT : 157 |||!:!..!||| !:!!|||||| !:!!.!! :!!..!|||.!!! !:!!:!!| LeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisT 232794 : TTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACA : 232853 158 : hrGlyGlyLeuSerTyrHisThrIleLeuProLeuSerSerLysGlnAsnIleSerGl : 176 |||||! ! !||| !!.!.! !:!! ! !||| !!! !!.. ! ! ! !! hrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGl 232854 : CCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGG : 232910 177 : uAsnPheThrSerArgArgValProHisThrTyrProGlyTyrAspLeuTrpPheAsp : 195 !||| !:!! ! !! ! !||| !!! ! !! !||| ! !.!.||| yAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAsp 232911 : GAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGAC : 232967 196 : ProGluAlaSerProAlaTyrGluIleValPheCysValHisCysValPheAlaLeuI : 215 !!..! !||||||.!! !!||||||:!!||| !:!!!!.|||:!!! !!.!!!!| ThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheI 232968 : ACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCA : 233027 216 : leThrTyrAsnIleThrThrGlyGlyCysGlyLeuAlaAlaIlePheValThrHisAl : 234 ||..! !!::!:!!|||..!|||!.!|||||||||!.!|||:!!.!.!.!! !||||| leValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAl 233028 : TCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGC : 233084 235 : aCysGlyGlnValGlnIleLeuMetIleGlnMetSerAspLeuValGluGlyLys<-> : 253 ||||||||||:!!.!.:!::!!||| :!!:!!..!|||||||||!!:!.!||| aCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGly 233085 : GTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGG : 233141 254 : ArgSerLysGlyThrValGlnAsnArgLeuSerValIleAlaLysHisHisValArgV : 272 !:!..!:!! !!..!!.!|||!..!:!|||.!! !!|||!.!:!!||||||:!!|||. GlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgT 233142 : CAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTA : 233201 273 : alLeuArgPheSerAla >>>> Target Intron 1 >>>> SerValAspGlu : 281 .!||||||!:!! !:!! 1315 bp !:!:!!!!:.!. hrLeuArgTyrLeuSer++ -+AsnIleGluAsn 233202 : CATTAAGGTATTTGTCTgt.........................ggAATATAGAGAAC : 234543 282 : ValLeuArgGluIleCysLeuMetGluLeuLeuAlaSerCysLeuThrIleCysLeuL : 301 |||:!!!.! !|||||||||:!:||||||:!!!.!!!! |||!.!!!:|||:!!| ValMetAsnLeuIleCysLeuValGluLeuValGlyCysThrLeuAsnMetCysMetL 234544 : GTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACGTTGAACATGTGCATGC : 234603 302 : euGluTyr{Ty} >>>> Target Intron 2 >>>> {r}CysIleMetGluTr : 309 ||||||||{!!} 180 bp { }||||||:!: ! euGluTyr{**}-+ +-{*}CysIleLeuThrSe 234604 : TCGAGTAT{TA}tt.........................aa{A}TGTATTTTAACTTC : 234807 310 : pGluAsnSerAspAlaValAlaIleLeuThrTyrPheIleLeuLeuIleSerPheMet : 328 :!!.!.!..... ::: !:!!||| !!|||:!!! !:!:|||.!.! rGlnGluLysSerLysGluLysLeuAlaSerTyrValIleValTyrValSerMetThr 234808 : TCAGGAAAAgtcgaaggaaaaattagCTTCATACGTCATCGTGTACGTGTCCATGACA : 234864 329 : PheAsnIleLeuIlePheCysTyrIleGlyGluLeuLeuMetGlnGln : 344 |||||||||...||||||||||||||||||||| !|||! :!!||| PheAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGln 234865 : TTtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGCAG : 234914 vulgar: CbirOr30 21 344 . KQ414889.1 232450 234914 + 422 M 25 75 G 1 0 M 205 615 G 0 3 M 25 75 5 0 2 I 0 1311 3 0 2 M 26 78 S 0 2 5 0 2 I 0 176 3 0 2 S 1 1 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232451 234914 422 + . gene_id 6 ; sequence CbirOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232451 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232451 233218 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233219 233220 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233219 234533 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234532 234533 . + . intron_id 0 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 234534 234613 . + . KQ414889.1 exonerate:protein2genome:local exon 234534 234613 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234614 234615 . + . intron_id 2 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 234614 234793 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234792 234793 . + . intron_id 1 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 234794 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234794 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232451 234914 422 + . alignment_id 6 ; Query CbirOr30 ; Align 232451 22 75 ; Align 232526 48 615 ; Align 233144 253 75 ; Align 234534 278 78 ; Align 234795 305 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 418 Query range: 18 -> 275 Target range: 221360 -> 222131 19 : TyrGluAspAspValArgTyrThrMetGlnLeuCysGlyTrpValLeuLysProIleG : 38 |||:!! :!!|||!:!! !:!:!!|||||| !! !!|||:!!||||||||||||| TyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleG 221361 : TACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCG : 221418 39 : lyMetTrpTyrLeuIleGlnAspSerCysSerArgAsnGluLysIleValSerIleAl : 57 ||:!:||| ! !! !..!! !!:! !|||! ! |||!:! !:!!! ! lyValTrp---ProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLe 221419 : GTGTTTGG---CCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 58 : aLeuIleValValCysPheSerAlaLeuCysPheValLeuIleProSerGlyLeuTyr : 76 !:!!! !|||||||||!:!||| !:!! |||:!!|||:!!|||!!!.!!|||||| uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 77 : LeuPheLeuValLysGlnAspValTyrAlaLeuIleLysLeuLeuGlyProValIleP : 96 :!!.!!|||! ! !:!!||||||||| ! !||||||||||||||||||:!!! !| ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 97 : heCysLeuThrSerThrIleLysTyrCysTyrLeuGlyThrArgGlyAlaAlaPheGl : 115 |||||:!!! !:!! !:!!|||||| ! ||| ! ! !! ! !! !.!! ! heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 116 : yArgCysLeuArgHisValThrAsnAspTrpArgLeuValArgAspGlnAspHisArg : 134 !..!|||:!!..!!.!:!! ! ||||||!:! !:!!! ! !!... ! !!!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 135 : GluIleMetLeuArgGlyAlaLeuIleGlyArgArgLeuThrMetLeuCysAlaIleP : 154 !!:||||||:!!..!..!|||:!!.!!||||||||||||! !|||:!!|||.!!.!!| AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 155 : heLeuTyrThrGlyGlyLeuSerTyrHisThrIleLeuProLeuSerSerLysGlnAs : 173 ||:!!|||!:!||| ::: |||::: ! !:!!|||!!!||| ! :!!! heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 174 : nIleSerGluAsnPheThrSerArgArgValProHisThrTyrProGlyTyrAspLeu : 192 ! !:!!:!!:!! ... :::||| ..!!:!||| !! !!! eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 193 : TrpPheAspProGluAlaSerProAlaTyrGluIleValPheCysValHisCysValP : 212 !!||| !!..! !||||||!.! !!||||||:!!|||! :!!!!. !:!! IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 213 : heAlaLeuIleThrTyrAsnIleThrThrGlyGlyCysGlyLeuAlaAlaIlePheVa : 231 !.! !:!:! !:!!!:!||||||:!!!.!!.!|||.!!|||!.!|||!!:|||!. laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 232 : lThrHisAlaCysGlyGlnValGlnIleLeuMetIleGlnMetSerAspLeuValGlu : 250 !..!|||||||||||||||:!!|||:!:||||||! ! !:!!!.! !!|||:!!.!. aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 251 : GlyLysArgSerLys<->GlyThrValGlnAsnArgLeuSerValIleAlaLysHisH : 269 |||::! !..!! ! ..!!.!|||.!.!..|||:!!:!! !|||!.!!!.!!.| GlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnH 222052 : GGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAAC : 222111 270 : isValArgValLeuArgPhe : 275 ||||||||:!!|||!:!!:! isValArgIleLeuGlnTyr 222112 : ACGTTCGAATATTGCAGTAT : 222131 vulgar: CbirOr30 18 275 . KQ414889.1 221360 222131 + 418 M 22 66 G 1 0 M 214 642 G 0 3 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221361 222131 418 + . gene_id 7 ; sequence CbirOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221361 222131 . + . KQ414889.1 exonerate:protein2genome:local exon 221361 222131 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221361 222131 418 + . alignment_id 7 ; Query CbirOr30 ; Align 221361 19 66 ; Align 221427 42 642 ; Align 222072 256 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 405 Query range: 265 -> 414 Target range: 300590 -> 302169 266 : AlaLysHisHisValArgValLeuArgPheSerAlaSerValAspGluValLeuArgG : 285 ..!|||||| !..! !! !||||||:!! !!:!|||!!:|||..!||||||! CysLysHisValHisGluAsnCysArgPheAlaLysAsnValGluGluThrLeuArgA 300591 : TGCAAGCATGTGCACGAAAATTGCAGATTTGCAAAGAACGTTGAGGAAACTTTGCGTG : 300648 286 : luIleCysLeuMetGluLeuLeuAlaSerCysLeuThrIleCysLeuLeuGluTyrTy : 304 !:.!!||||||:!!|||:!!!!!! !||| |||! !:!:||||||||||||||||| spPheCysLeuValGluIlePheGluSerThrLeuIleLeuCysLeuLeuGluTyrTy 300649 : ACTTCTGCTTAGTGGAAATCTTCGAGTCCACGCTGATTTTGTGTTTGCTCGAATACTA : 300705 305 : rCysIleMet >>>> Target Intron 1 >>>> GluTrpGluAsnSerAspA : 314 ||||:!::!! 970 bp ||||||:!!|||||||||. rCysLeuVal++ ++GluTrpGlnAsnSerAspT 300706 : CTGTTTGGTGgt.........................agGAATGGCAAAATAGCGACA : 301705 315 : laValAlaIleLeuThrTyrPheIleLeuLeuIleSerPheMetPheAsnIleLeuIl : 333 !!:!!|||!!:||||||!:!|||! !||||||! ||||||! |||||||||!!!|| hrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAsnIlePheIl 301706 : CGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATATTCAT : 301762 334 : ePheCysTyrIleGlyGluLeuLeuMetGlnGln >>>> Target Intron 2 > : 345 |||||||||||||||||||:!!||| :!!||| 80 bp ePheCysTyrIleGlyGluIleLeuSerGluGln++ 301763 : ATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt...................... : 301800 346 : >>> TyrSerThrValAlaSerAlaValTyrGlyIleAsnTrpTyrAspLeuSerGl : 362 ! !||| !:!!!.!|||||| !|||! !|||:!!||||||:!!||| !!!. ++CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAl 301801 : ...agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGC : 301929 363 : yLysLysAlaLeuAspLeuLysLeuIleIleAlaMetSerArgTyrProValLysLeu : 381 !|||!:!|||! !||||||! |||:!!! !!.!!!:|||!:!|||||| !|||||| aLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeu 301930 : GAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTT : 301986 382 : ThrAlaGlyLysPheValAspLeuSerLeuAsnThrPheGlyAla >>>> Target : 397 ||||||||||||.!.:!!|||||||||||||||||||||.!!:!! 8 ThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSer++ 301987 : ACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTgt........... : 302036 398 : Intron 3 >>>> ValLeuArgThrSerValValTyrLeuAsnLeuLeuArgThr : 410 2 bp |||:!!!:!||||||||||||||||||||||||||||||||| ++ValValLysThrSerValValTyrLeuAsnLeuLeuArgThr 302037 : ..............agGTGGTGAAAACATCGGTGGTGTACTTGAATTTACTGCGAACA : 302155 411 : ValThrGluTyr : 414 ||||||.!.::: ValThrAsnTrp 302156 : GTTACAAACtgg : 302169 vulgar: CbirOr30 265 414 . KQ414889.1 300590 302169 + 405 M 42 126 5 0 2 I 0 966 3 0 2 M 37 111 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300591 302169 405 + . gene_id 8 ; sequence CbirOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300591 300716 . + . KQ414889.1 exonerate:protein2genome:local exon 300591 300716 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300717 300718 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300717 301686 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301685 301686 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302169 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302169 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300591 302169 405 + . alignment_id 8 ; Query CbirOr30 ; Align 300591 266 126 ; Align 301687 308 111 ; Align 301878 345 156 ; Align 302116 397 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 402 Query range: 24 -> 306 Target range: 266637 -> 267555 25 : TyrThrMetGlnLeuCysGlyTrpValLeuLysProIleGlyMetTrpTyrLeuIleG : 44 |||!:!:!!|||||| ! !!||| !!||||||||||||||| ||| ! !:!: TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeu- 266638 : TACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTG- : 266695 45 : lnAspSerCysSerArgAsnGluLysIleValSerIleAlaLeuIleValValCysPh : 63 ... ! |||!:! !|||::!||||||||| !||||||||||||:!!|||!: --SerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266696 : --TCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 64 : eSerAlaLeuCysPheValLeuIleProSerGlyLeuTyrLeuPheLeuValLysGln : 82 !!!!:!!:!! |||..!:!!||||||!!! !!!!:!!||| !!|||! ! ! :!! rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 83 : AspValTyrAlaLeuIleLysLeuLeuGlyProValIlePheCysLeuThrSerThrI : 102 ..!:!! !.!! !:!:|||:!!!!!||||||:!!! ! !!! !!!..!.!! !| SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 103 : leLysTyrCysTyrLeuGlyThrArgGlyAlaAlaPheGlyArgCysLeuArgHisVa : 121 ||!!.||| ! ||| ! !|||.!! !! !.!. !! !!|||:!!..!|||:! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 122 : lThrAsnAspTrpArgLeuValArgAspGlnAspHisArgGluIleMetLeuArgGly : 140 ! !!..|||||||||:!!|||! ! ! !!!: !!!:!:!!:!:||||||!:!..! tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 141 : AlaLeuIleGlyArgArgLeuThrMetLeuCysAlaIlePheLeuTyrThrGlyGlyL : 160 ||| !||||||||| !:!!.!!!!:!!!|||||| |||:!! ! !|||! !| AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 161 : euSerTyrHisThrIleLeuProLeuSerSerLysGlnAsnIleSerGluAsnPheTh : 179 ||.!!||| !..!||| ! !!!!!!!!! !:!! ! !! ||| || euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 180 : rSerArgArgValProHisThrTyrProGlyTyrAspLeuTrpPheAspProGluAla : 198 |!!!! ! ! !! ! !!! ! !!! !||| ! ! !.!!! !!!:.!! rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 199 : SerProAlaTyrGluIleValPheCysValHisCysValPheAlaLeuIleThrTyrA : 218 ||||||.!! !!|||||||||.!! ! !!!.! !|||! !.!!!!|||..! !!: SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 219 : snIleThrThrGlyGlyCysGlyLeuAlaAlaIlePheValThrHisAlaCysGlyGl : 237 ::! !..!..!|||!.!! !.!!|||||||||:!:|||!.!.!!|||||||||||||| erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 238 : nValGlnIleLeuMetIleGlnMetSerAspLeuValGluGlyLysArg<-><->Ser : 254 |:!!...:!:||||||!!: !!!:!.!!!:!!!|||.!. !!...||| !:! nLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsn 267272 : GCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAAT : 267328 255 : LysGlyThrValGlnAsnArgLeuSerValIleAlaLysHisHisValArgValLeu{ : 274 |||..!..! ! :!!!:!:!!.!!|||:!!!.!:!!||||||:!!|||||||||{ LysAsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeu{ 267329 : AAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTG{ : 267388 275 : Ar} >>>> Target Intron 1 >>>> {g}PheSerAlaSerValAspGluVa : 282 !!} 69 bp {!}|||! !||| !!:!!!!:...|| Se}++ ++{r}PheIleAlaArgIleGluSerVa 267389 : AG}gt.........................ag{C}TTCATAGCACGTATCGAAAGTGT : 267481 283 : lLeuArgGluIleCysLeuMetGluLeuLeuAlaSerCysLeuThrIleCysLeuLeu : 301 |:!!!!!|||||||||!!!|||||||||!!! !!!! !:!! !||||||:!!||| lMetSerGluIleCysPheMetGluLeuPheLysCysThrMetAspIleCysValLeu 267482 : AATGAGCGAAATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTGCTT : 267538 302 : GluTyrTyrCysIle : 306 ...|||||| !:!! SerTyrTyrIleLeu 267539 : AGCTATTATATCCTT : 267555 vulgar: CbirOr30 24 306 . KQ414889.1 266637 267555 + 402 M 19 57 G 1 0 M 209 627 G 0 6 M 20 60 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266638 267555 402 + . gene_id 9 ; sequence CbirOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266638 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266638 267389 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267555 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266638 267555 402 + . alignment_id 9 ; Query CbirOr30 ; Align 266638 25 57 ; Align 266695 45 627 ; Align 267328 254 60 ; Align 267460 275 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 400 Query range: 24 -> 349 Target range: 259772 -> 261859 25 : TyrThrMetGlnLeuCysGlyTrpValLeuLysProIleGlyMetTrpTyrLeuIleG : 44 |||!:!:!:|||!!! ! !!||| !!||||||||||||||| ||| ! ! !. TyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrp---ProProS 259773 : TATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGG---CCACCTT : 259827 45 : lnAspSerCysSerArgAsnGluLysIleValSerIleAlaLeuIleValValCysPh : 63 .!..!||| !!!||| !|||||||||:!!|||:!! !|||||| !!:!!|||!: erSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTy 259828 : CATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTA : 259884 64 : eSerAlaLeuCysPheValLeuIleProSerGlyLeuTyrLeuPheLeuValLysGln : 82 !|||.!!:!! !!..!|||||||||!!!! !|||:!!:!!.!.|||! !|||:!! rSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGlu 259885 : CAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAG : 259941 83 : AspValTyrAlaLeuIleLysLeuLeuGlyProValIlePheCysLeuThrSerThrI : 102 ..!:!!||| ! !! |||:!!|||||||||:!!! ! !!! !!!..!.!! !| SerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysI 259942 : AGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTA : 260001 103 : leLysTyrCysTyrLeuGlyThrArgGlyAlaAlaPheGlyArgCysLeuArgHisVa : 121 ||!!.||| ||| ! !|||||| !! !.!. !!!!|||:!!..!||||| leAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisVa 260002 : TTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGT : 260058 122 : lThrAsnAspTrpArgLeuValArgAspGlnAspHisArgGluIleMetLeuArgGly : 140 | !||||||||||||:!!:!!! ! :!! ! !!!:!.!.:!:||||||||| ! lGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyr 260059 : GGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATAC : 260115 141 : AlaLeuIleGlyArgArgLeuThrMetLeuCysAlaIlePheLeuTyrThrGlyGlyL : 160 ||| !.!!|||||| !:!!.!! ! !|||||| !|||:!! ! !|||! !| AlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValL 260116 : GCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTC : 260175 161 : euSerTyrHisThrIleLeuProLeuSerSerLysGlnAsnIleSerGluAsnPheTh : 179 ||!!!!:! ! !:!! ! !||||||!!!:!! !! ! !! !||| || euCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluTh 260176 : TGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGAC : 260232 180 : rSerArgArgValProHisThrTyrProGlyTyrAspLeuTrpPheAspProGluAla : 198 |!!!! ! ! !! ! !!! ! !!! !||| ! ! !.!.:!! !.!.! ! rArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAsp 260233 : GAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGAC : 260289 199 : SerProAlaTyrGluIleValPheCysValHisCysValPheAlaLeuIleThrTyrA : 218 |||||| ! !!|||||||||.!! !|||!!.! !|||! !.!!!!|||..! !!: SerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnS 260290 : AGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATT : 260349 219 : snIleThrThrGlyGlyCysGlyLeuAlaAlaIlePheValThrHisAlaCysGlyGl : 237 ::! !|||..!||| !! !.!!|||||||||:!!.!...!.!!|||||||||||||| erSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGl 260350 : CGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCA : 260406 238 : nValGlnIleLeuMetIleGlnMetSerAspLeuValGluGlyLysArgSer<-><-> : 255 |:!!.!.:!:|||||| ! !!!:!!!!!:!!!|||!!:! !..!|||!:! nLeuAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLys 260407 : GTTGAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAG : 260463 256 : LysGlyThrValGlnAsnArgLeuSerValIleAlaLysHisHisValArgValLeuA : 274 ||| !.!! ! !!...!:!!.!!||||||!.!:!!||||||:!!|||!.!|||! LysLysAlaProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeuT 260464 : AAAAAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTCA : 260523 275 : rgPheSerAlaSerValAspGluValLeuArgGluIleCysLeuMetGluLeuLeuAl : 293 !! ..! !! !! ! ! !!:!!||| !!! !!!!!!: !:!!!. hr***AspLeuPheAspIleThrPheValArg***ArgIlePheIleIleThrValGl 260524 : CGTAAGATTTGTTTGATATTACTTTTGTACGATAAAGGATTTTTATAATTACGGTAGG : 260580 294 : aSerCysLeuThrIleCysLeu{Le} >>>> Target Intron 1 >>>> {u} : 301 !||| ::: |||{:!} 1109 bp {!} ySerThrIleIle***LysLeu{Il}++ -+{e} 260581 : ATCTactataatttgaaaatta{at}gt.........................tg{a} : 261715 302 : GluTyrTyrCysIleMetGluTrpGluAsnSerAspAlaValAlaIleLeuThrTyrP : 321 :::::: :::...||||||! .!...!||| ! ! !:!:! !||||||| TyrPhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrP 261716 : tatttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATT : 261773 322 : heIleLeuLeuIleSerPheMetPheAsnIleLeuIlePheCysTyrIleGlyGluLe : 340 ||!!::!!||||||:!!.!! ||||||:!!!!!|||.!!|||||||||||||||:! heMetMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIl 261774 : TCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAAT : 261830 341 : uLeuMetGlnGlnTyrSerThrValAla : 349 !|||! !:!!||| ..! !:!!||| eLeuThrGluGlnValGlnHisLeuAla 261831 : ACTAACGGAACAGGTACAACATTTGGca : 261859 vulgar: CbirOr30 24 349 . KQ414889.1 259772 261859 + 400 M 16 48 G 1 0 M 213 639 G 0 6 M 46 138 S 0 2 5 0 2 I 0 1105 3 0 2 S 1 1 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259773 261859 400 + . gene_id 10 ; sequence CbirOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259773 260605 . + . KQ414889.1 exonerate:protein2genome:local exon 259773 260605 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 260606 260607 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 260606 261714 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261713 261714 . + . intron_id 0 ; splice_site "tg" KQ414889.1 exonerate:protein2genome:local cds 261715 261859 . + . KQ414889.1 exonerate:protein2genome:local exon 261715 261859 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259773 261859 400 + . alignment_id 10 ; Query CbirOr30 ; Align 259773 25 48 ; Align 259821 42 639 ; Align 260466 255 138 ; Align 261716 302 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 384 Query range: 15 -> 274 Target range: 208185 -> 208962 16 : AsnAlaHisTyrGluAspAspValArgTyrThrMetGlnLeuCysGlyTrpValLeuL : 35 ||| !:!!|||:!!:!!|||:!!!!!!:!!.!:!:!::||| !! !|||..!|||| AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 36 : ysProIleGlyMetTrpTyrLeuIleGlnAspSerCysSerArgAsnGluLysIleVa : 54 || !|||||| ||| ! ! !||| !! ||| !! |||!!.! ! ysIleIleGlySerTrpProArgSerIleAspArg---SerTrpLeuGluAsnSerGl 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGT---TCCTGGTTAGAGAACAGCCA : 208297 55 : lSerIleAlaLeuIleValValCysPheSerAlaLeuCysPheValLeuIleProSer : 73 ! !||| !|||! !|||:!! !! !!!! !||| !!|||:!!:!!||||||!!! nHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThr 208298 : GCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACC : 208354 74 : GlyLeuTyrLeuPheLeuValLysGlnAspValTyrAlaLeuIleLysLeuLeuGlyP : 93 |||:!!!:! !.!!|||||| :!!||| !!|||! !! !:!!|||:!!! !.!! GlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerA 208355 : GGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCG : 208414 94 : roValIlePheCysLeuThrSerThrIleLysTyrCysTyrLeuGlyThrArgGlyAl : 112 !!:!!! !|||! !:!!! !:!! !! |||||| !:!! !..!|||! !!. laLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGl 208415 : CTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGG : 208471 113 : aAlaPheGlyArgCysLeuArgHisValThrAsnAspTrpArgLeuValArgAspGln : 131 !! !.!. !!!:!|||:!!..!:!!||| ! !||||||||| !|||..! !!:!! yAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGlu 208472 : TGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAG : 208528 132 : AspHisArgGluIleMetLeuArgGlyAlaLeuIleGlyArgArgLeuThrMetLeuC : 151 !!: !!|||:!!||||||||| !..!||| !.!!!.!|||!:!|||! !:!!:!!| GluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleC 208529 : GAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATAT : 208588 152 : ysAlaIlePheLeuTyrThrGlyGlyLeuSerTyrHisThrIleLeuProLeuSerSe : 170 ||!.! !|||:!!||| !||| ::: |||::: ! !|||||||||!!! ! ysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrAr 208589 : GCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCG : 208645 171 : rLysGlnAsnIleSerGluAsnPheThrSerArgArgValProHisThrTyrProGly : 189 ! ! :!! !:!!..!|||..! !!.!! !! ! ! ! !! ..!||||||! ! gAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProVal 208646 : AGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTT : 208702 190 : TyrAspLeuTrpPheAspProGluAlaSerProAlaTyrGluIleValPheCysValH : 209 ! ! !!! .!.||| !..! !||||||!.! !!|||||| !!!:! |||! ProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValG 208703 : CCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTAC : 208762 210 : isCysValPheAlaLeuIleThrTyrAsnIleThrThrGlyGlyCysGlyLeuAlaAl : 228 !.! :!!! !.!!!!:!!.!!:!!|||||||||..!|||!.!|||||||||||||| lnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAl 208763 : AATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGC : 208819 229 : aIlePheValThrHisAlaCysGlyGlnValGlnIleLeuMetIleGlnMetSerAsp : 247 |:!:.!!!.!! !|||||||||||||||:!!|||||||||||| ! !|||..! ! aLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLys 208820 : GCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAG : 208876 248 : LeuValGluGlyLysArg<->SerLysGlyThrValGlnAsnArgLeuSerValIleA : 266 ||||||!!:|||::!..! ..!:!! !!.!:!!.!..!.||||||:!! !|||! LeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleV 208877 : TTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCG : 208936 267 : laLysHisHisValArgValLeuArg : 274 .!:!!!!.||||||||||||:!!!:! alGluGlnHisValArgValIleLys 208937 : TGGAGCAGCATGTTCGAGTGATCAAG : 208962 vulgar: CbirOr30 15 274 . KQ414889.1 208185 208962 + 384 M 31 93 G 1 0 M 206 618 G 0 3 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 208962 384 + . gene_id 11 ; sequence CbirOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208186 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208962 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208186 208962 384 + . alignment_id 11 ; Query CbirOr30 ; Align 208186 16 93 ; Align 208279 48 618 ; Align 208900 254 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 383 Query range: 10 -> 273 Target range: 284481 -> 285285 11 : ValSerGluValHisAsnAlaHisTyrGluAspAspValArgTyrThrMetGlnLeuC : 30 |||!!!... ! !:!!:!! !::!!: ||| !! !|||!:!:!:|||:!! ValThrSerSerThrAspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetA 284482 : GTCACTTCTTCAACCGATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGA : 284539 31 : ysGlyTrpValLeuLysProIleGlyMetTrpTyrLeuIleGlnAspSerCysSerAr : 49 ! !!||| !!|||||||||||||||:!:||| !||| ... !!!! !!!! snArgTrpPheLeuLysProIleGlyValTrpProLeu---SerLeuCysValThrTh 284540 : ACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTC---AGTCTCTGCGTGACCAC : 284593 50 : gAsnGluLysIleValSerIleAlaLeuIleValValCysPheSerAlaLeuCysPhe : 68 ! ||||||||| !|||:!:!.!||| :!!:!! !!! !! ! !:!! !!||| rLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPhe 284594 : CTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTC : 284650 69 : ValLeuIleProSerGlyLeuTyrLeuPheLeuValLysGln<->AspValTyrAlaL : 87 :!!|||:!!|||!!!!.!|||! ! ! ! |||! !||| |||:!! !!.!! LeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrL 284651 : CTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGA : 284710 88 : euIleLysLeuLeuGlyProValIlePheCysLeuThrSerThrIleLysTyrCysTy : 106 !||||||:!!:!!||||||:!!! !||||||:!!! !:!!.!!|||||||||! ! ysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIl 284711 : AGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACAT : 284767 107 : rLeuGlyThrArgGlyAlaAlaPheGlyArgCysLeuArgHisValThrAsnAspTrp : 125 !||| !:!!||||||!.! !.!!|||!:!|||:!!!:! !!:!! ! |||||| eLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIleArgAlaAspTrp 284768 : TCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGACTGG : 284824 126 : ArgLeuVal<-><-><->ArgAspGlnAspHisArgGluIleMetLeuArgGlyAlaL : 142 !|||..! !! ...::::::...|||||||||||| ! !.!!||| SerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaA 284825 : TCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTA : 284884 143 : euIleGlyArgArgLeuThrMetLeuCysAlaIlePheLeuTyrThrGlyGlyLeuSe : 161 !||||||||| !|||.!!!!:!!!|||||| !|||:!!|||:!!||||||!!!! rgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePh 284885 : GAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTT : 284941 162 : rTyrHisThrIleLeuProLeuSerSerLysGlnAsnIleSerGluAsnPheThrSer : 180 !||| !|||:!::!!||||||!!!!!! !!::!.. ! ! :!! ! !!!! eTyrThrThrValMetProLeuCysThrValArgThrGluIleIleAspAsnGluThr 284942 : CTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACC : 284998 181 : ArgArgValProHisThrTyrProGlyTyrAspLeuTrpPheAspProGluAlaSerP : 200 !||| !!!!..!!!:!||| !||| ! ! .!!||||||....!!|||| ValArg---SerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerP 284999 : GTGAGA---TCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCC : 285055 201 : roAlaTyrGluIleValPheCysValHisCysValPheAlaLeuIleThrTyrAsnIl : 219 ||:!!!:!||||||||| ! !:!!!!.|||:!! !|||!!!:!!! !|||::::! roSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerVa 285056 : CGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGT : 285112 220 : eThrThrGlyGlyCysGlyLeuAlaAlaIlePheValThrHisAlaCysGlyGlnVal : 238 !|||..!|||!.!|||.!!|||||||||:!:||||||! !|||!.!||||||||| !! lThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPhe 285113 : CACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTT : 285169 239 : GlnIleLeuMetIleGlnMetSerAspLeuValGluGly<->LysArgSerLysGly< : 257 ::!||||||:!!! !:!!:!!..! ! ||||||!!:||| ||| !!!!!|||||| ArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLysGlyArgLysGlyL 285170 : AGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGT : 285229 258 : -><->ThrValGlnAsnArgLeuSerValIleAlaLysHisHisValArgValLeu : 273 ||| !:!!.!.||||||.!!! !||| !:!!||||||:!!!:!:!!||| euSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu 285230 : TGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG : 285285 vulgar: CbirOr30 10 273 . KQ414889.1 284481 285285 + 383 M 32 96 G 1 0 M 39 117 G 0 3 M 46 138 G 0 9 M 54 162 G 1 0 M 68 204 G 0 3 M 5 15 G 0 6 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284482 285285 383 + . gene_id 12 ; sequence CbirOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284482 285285 . + . KQ414889.1 exonerate:protein2genome:local exon 284482 285285 . + . insertions 21 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 284482 285285 383 + . alignment_id 12 ; Query CbirOr30 ; Align 284482 11 96 ; Align 284578 44 117 ; Align 284698 83 138 ; Align 284845 129 162 ; Align 285007 184 204 ; Align 285214 252 15 ; Align 285235 257 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 381 Query range: 15 -> 306 Target range: 274356 -> 275306 16 : AsnAlaHisTyrGluAspAspValArgTyrThrMetGlnLeuCysGlyTrpValLeuL : 35 !.!|||:!!!:!!!:..! ! ! !|||!:!:!!|||||| ! !!||| !!|||| ThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuL 274357 : ACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGA : 274414 36 : ysProIleGlyMetTrpTyrLeuIleGlnAspSerCysSerArgAsnGluLysIleVa : 54 ||||||||||| !||| ||| !..! !!!! !!!!:! !|||::!|||:! ysProIleGlyAlaTrpProLeuAlaSerProThr---ThrLysPheGluArgIleLe 274415 : AGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACC---ACGAAATTCGAACGAATCCT : 274468 55 : lSerIleAlaLeuIleValValCysPheSerAlaLeuCysPheValLeuIleProSer : 73 !||| ! |||||| :::|||::!!!! !:!! !! !..!:!!||||||||| uSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSer 274469 : TTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGC : 274525 74 : GlyLeuTyrLeuPheLeuValLysGlnAspValTyrAlaLeuIleLysLeuLeuGlyP : 93 !!!!:!!:!!.!.|||||| ! :!!..!:!!:!! ! !:!:||||||||||||| IlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyP 274526 : ATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTC : 274585 94 : roValIlePheCysLeuThrSerThrIleLysTyrCysTyrLeuGlyThrArgGlyAl : 112 ||:!! ! !!! !!!! !.!! !|||!!.||| ! ||| ! !|||.!! roLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLy 274586 : CTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAA : 274642 113 : aAlaPheGlyArgCysLeuArgHisValThrAsnAspTrpArgLeuValArgAspGln : 131 !! !.!. !! !!|||:!!..!|||:!! !!..|||||||||:!!|||! ! ! ! sGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgPro 274643 : AGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCG : 274699 132 : AspHisArgGluIleMetLeuArgGlyAlaLeuIleGlyArgArgLeuThrMetLeuC : 151 !!: !!!:!:!!:!:||||||!:!..!||| !||||||||| !:!!.!!!!:!!!| GluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheC 274700 : GAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCT : 274759 152 : ysAlaIlePheLeuTyrThrGlyGlyLeuSerTyrHisThrIleLeuProLeuSerSe : 170 ||||| |||:!! ! !|||! !|||!!!||| !..!||| ! !!!!!!!!! ysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMe 274760 : GTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTAT : 274816 171 : rLysGlnAsnIleSerGluAsnPheThrSerArgArgValProHisThrTyrProGly : 189 !:!! ! ! !! !||| |||!!!! ! ! ! ! !!! ! !!.! tGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAla 274817 : GCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCT : 274873 190 : TyrAspLeuTrpPheAspProGluAlaSerProAlaTyrGluIleValPheCysValH : 209 ||| ! ! !!! !!!:.!!||||||.!! !!|||||||||.!!..! !! TyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerG 274874 : TACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGC : 274933 210 : isCysValPheAlaLeuIleThrTyrAsnIleThrThrGlyGlyCysGlyLeuAlaAl : 228 !.! !|||! !.!!!!|||..! !!:::! !.!!..!|||!.!! !.!!|||||||| lnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAl 274934 : AATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGC : 274990 229 : aIlePheValThrHisAlaCysGlyGlnValGlnIleLeuMetIleGlnMetSerAsp : 247 |:!:|||!.!.!!||||||! !||||||:!!...:!:||||||||| !!!:!!!!!: aValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGlu 274991 : CGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAG : 275047 248 : LeuValGluGlyLysArg<-><->SerLysGlyThrValGlnAsnArgLeuSerValI : 265 !!!|||.!. !...||| :::|||...... ::!..!:!!.!!|||: PheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValV 275048 : TTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGG : 275107 266 : leAlaLysHisHisValArgValLeu{Ar} >>>> Target Intron 1 >>>> : 274 !!!.!:!!||||||:!!|||||||||{!!} 74 bp alValGluHisHisLeuArgValLeu{Se}++ + 275108 : TTGTCGAACATCATCTGAGGGTACTC{AG}gt.........................a : 275208 275 : {g}PheSerAlaSerValAspGluValLeuArgGluIleCysLeuMetGluLeuLeu : 292 {!}|||! !||| !!:!!!!:!!:|||:!!!.!..!||||||!!!|||||||||!!! +{r}PheIleAlaArgIleGluAspValMetAsnArgIleCysPheMetGluLeuPhe 275209 : g{T}TTCATAGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAATTGTTC : 275262 293 : AlaSerCysLeuThrIleCysLeuLeuGluTyrTyrCysIle : 306 !!!! !||| !!!:|||:!!|||! |||||| !:!! LysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleLeu 275263 : AAGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTCTC : 275306 vulgar: CbirOr30 15 306 . KQ414889.1 274356 275306 + 381 M 31 93 G 1 0 M 206 618 G 0 6 M 20 60 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274357 275306 381 + . gene_id 13 ; sequence CbirOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274357 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274357 275135 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274357 275306 381 + . alignment_id 13 ; Query CbirOr30 ; Align 274357 16 93 ; Align 274450 48 618 ; Align 275074 254 60 ; Align 275211 275 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 375 Query range: 12 -> 275 Target range: 212836 -> 213625 13 : GluValHisAsnAlaHisTyrGluAspAspValArgTyrThrMetGlnLeuCysGlyT : 32 :!!|||.!.:!!..! !|||||| ! |||... :::::: !! ! ! !!| GlnValGluAspCysThrTyrGluLysArgValAsnLeuSerIleProTrpAsnArgT 212837 : CAGGTCGAAGACTGTACCTACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTT : 212894 33 : rpValLeuLysProIleGlyMetTrpTyrLeuIleGlnAspSerCysSerArgAsnGl : 51 ||:!!|||||||||! |||:!!||| ! ! !:!!..!! ! !|||! !! !|| rpLeuLeuLysProThrGlyLeuTrp---ProAspLysSerTyrValSerProIleGl 212895 : GGCTTTTGAAACCAACGGGTTTGTGG---CCCGACAAGTCCTACGTTTCACCGATCGA : 212948 52 : uLysIleValSerIleAlaLeuIleValValCysPheSerAlaLeuCysPheValLeu : 70 ||||! !:!!:!! ! !:!!! !..!||||||!:!.!! !:!! !!!:!:!!:!! uLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLeuVal 212949 : GAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTA : 213005 71 : IleProSerGlyLeuTyrLeuPheLeuValLysGlnAspValTyrAlaLeuIleLysL : 90 ||||||!!!.!!||||||:!!||||||! ! !:::::::::::: |||:!!| IleProCysSerLeuTyrValPheLeuAspValGluAsnIlePheLysGluIleGluL 213006 : ATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaagagaTCGAAT : 213065 91 : euLeuGlyProValIlePheCysLeuThrSerThrIleLysTyrCysTyrLeuGlyTh : 109 ||!!!||| ! !! !||||||:!!.!!:!! ! |||||| !! ||| ! euPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLe 213066 : TGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACT : 213122 110 : rArgGlyAlaAlaPheGlyArgCysLeuArgHisValThrAsnAspTrpArgLeuVal : 128 !!.!|||! !! !.!! !!! !|||:!!..!|||:!!! ! !!||||||!:! !:!! uHisGlyAspAspIleArgThrCysValGluHisMetLysTyrAspTrpLysAsnIle 213123 : TCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATC : 213179 129 : ArgAspGlnAspHisArgGluIleMetLeuArgGlyAlaLeuIleGlyArgArgLeuT : 148 ! ! !!:!!!!: !!!:!||||||||| ! !..!||| !.!!|||!:!|||:!!. ThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleV 213180 : ACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAG : 213239 149 : hrMetLeuCysAlaIlePheLeuTyrThrGlyGlyLeuSerTyrHisThrIleLeuPr : 167 .!! :!!||||||.!!|||:!!||||||||| ! !! !||| ! !:!!:!!|| alThrIleCysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuValValPr 213240 : TGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACC : 213296 168 : oLeuSerSerLysGlnAsnIleSerGluAsnPheThrSerArgArgValProHisThr : 186 |:!!|||:!! ! :!!! :!!:!!|||:!!.!!!.! !! ! ! !! ! ..! oIleSerAlaAspLysMetValAlaGluAspLeuAsnValThrPheArgGlnMetVal 213297 : GATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTG : 213353 187 : TyrProGlyTyrAspLeuTrpPheAspProGluAlaSerProAlaTyrGluIleValP : 206 !|||! !! !!! !!||| !..! !||||||!.! !!|||||| !!| ValProValSerArgPheIleValAspValArgTyrSerProValAsnGluIlePheP 213354 : GTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCT : 213413 207 : heCysValHisCysValPheAlaLeuIleThrTyrAsnIleThrThrGlyGlyCysGl : 225 ||! :!!!!. !:!! !!.!:!!:!:! !:!! !|||.!!..!! !!.!|||.! heLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSe 213414 : TCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAG : 213470 226 : yLeuAlaAlaIlePheValThrHisAlaCysGlyGlnValGlnIleLeuMetIleGln : 244 !|||||||||:!:|||!.!..!|||||||||||||||:!! |||||||||! ! ! rLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrp 213471 : CTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGG : 213527 245 : MetSerAspLeuValGluGlyLysArgSerLysGly<->ThrValGlnAsnArgLeuS : 263 :!!..! !!|||:!!!!:|||!:!..!..!! !.!! !.!|||.!.:!!|||:!!: LeuGluHisLeuIleAspGlyArgGluAspMetSerLysAsnValAspAspArgIleA 213528 : CTGGAACATTTGATAGACGGTAGAGAGGATATGAGCAAGAATGTGGACGACAGAATCG : 213587 264 : erValIleAlaLysHisHisValArgValLeuArgPhe : 275 !!||||||!.!!!.!!.|||||||||:!!|||!:!!:: laValIleValAsnGlnHisValArgIleLeuLysTrp 213588 : CGGTCATCGTGAACCAGCATGTGCGGATACTGAAGTGG : 213625 vulgar: CbirOr30 12 275 . KQ414889.1 212836 213625 + 375 M 28 84 G 1 0 M 215 645 G 0 3 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212837 213625 375 + . gene_id 14 ; sequence CbirOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212837 213625 . + . KQ414889.1 exonerate:protein2genome:local exon 212837 213625 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212837 213625 375 + . alignment_id 14 ; Query CbirOr30 ; Align 212837 13 84 ; Align 212921 42 645 ; Align 213569 257 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 373 Query range: 10 -> 273 Target range: 278534 -> 279338 11 : ValSerGluValHisAsnAlaHisTyrGluAspAspValArgTyrThrMetGlnLeuC : 30 |||!!!..! ! !:!!:!! !::.!. ||| !! !|||!:!:!:|||:!! ValThrSerSerThrAspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetA 278535 : GTCACTTCGTCAACCGATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGA : 278592 31 : ysGlyTrpValLeuLysProIleGlyMetTrpTyrLeuIleGlnAspSerCysSerAr : 49 ! !!||| !!|||||||||||||||:!:||| !||| ... !!!! !!!! snArgTrpPheLeuLysProIleGlyValTrpProLeu---SerLeuCysValThrTh 278593 : ACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTC---AGTCTCTGCGTGACCAC : 278646 50 : gAsnGluLysIleValSerIleAlaLeuIleValValCysPheSerAlaLeuCysPhe : 68 ! ||||||||| !|||:!:!.!||| :!!:!! !!! !! ! !:!! !!||| rLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPhe 278647 : CTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTC : 278703 69 : ValLeuIleProSerGlyLeuTyrLeuPheLeuValLysGln<->AspValTyrAlaL : 87 :!!|||:!!|||!!!!.!|||! ! ! ! |||! !||| |||:!! !!.!! LeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrL 278704 : CTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGA : 278763 88 : euIleLysLeuLeuGlyProValIlePheCysLeuThrSerThrIleLysTyrCysTy : 106 !||||||:!!:!!||||||:!!! !|||||| !! !:!!||||||||||||! ! ysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIl 278764 : AGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACAT : 278820 107 : rLeuGlyThrArgGlyAlaAlaPheGlyArgCysLeuArgHisValThrAsnAspTrp : 125 !||| !:!!||||||!.! !.!!|||!:!|||:!!!.! !!:!! !!..|||||| eLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrp 278821 : TCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGG : 278877 126 : ArgLeuVal<-><-><->ArgAspGlnAspHisArgGluIleMetLeuArgGlyAlaL : 142 !|||..! |||...::::::...|||||||||||| ! !.!!||| SerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaA 278878 : TCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTA : 278937 143 : euIleGlyArgArgLeuThrMetLeuCysAlaIlePheLeuTyrThrGlyGlyLeuSe : 161 !||||||||| !|||.!!!!:!!! !!||| !|||:!!|||:!!||||||:!!! rgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPh 278938 : GAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTT : 278994 162 : rTyrHisThrIleLeuProLeuSerSerLysGlnAsnIleSerGluAsnPheThrSer : 180 !||| !.!!:!::!!||||||! !:!! !!::!.. ! ! :!! ! !!!! eTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIleAspAsnGluThr 278995 : CTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACG : 279051 181 : ArgArgValProHisThrTyrProGlyTyrAspLeuTrpPheAspProGluAlaSerP : 200 !||| !!!!..!!!:!||| !||| ! ! .!!||||||....!!|||| ValArg---SerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerP 279052 : GTGAGA---TCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCC : 279108 201 : roAlaTyrGluIleValPheCysValHisCysValPheAlaLeuIleThrTyrAsnIl : 219 ||:!!!:!||||||||| ! !:!!!!.|||:!! !|||!!!:!! !|||::::! roSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerVa 279109 : CGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGT : 279165 220 : eThrThrGlyGlyCysGlyLeuAlaAlaIlePheValThrHisAlaCysGlyGlnVal : 238 !|||..!|||!.!|||.!!||| !|||:!:||||||! !|||!.!||||||||| !! lThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCysGlyGlnPhe 279166 : CACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTC : 279222 239 : GlnIleLeuMetIleGlnMetSerAspLeu<-><-><->ValGluGlyLysArgSerL : 255 ::!||||||:!!! !:!!:!!..! ! ||| |||:!!|||!:!!:!||| ArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLysGlyArgLysSerL 279223 : AGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGGAGGAAGAGCT : 279282 256 : ysGlyThrValGlnAsnArgLeuSerValIleAlaLysHisHisValArgValLeu : 273 !.!!||| !:!!.!.||||||.!!! !||| !:!!||||||:!!!:!:!!||| euSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu 279283 : TGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG : 279338 vulgar: CbirOr30 10 273 . KQ414889.1 278534 279338 + 373 M 32 96 G 1 0 M 39 117 G 0 3 M 46 138 G 0 9 M 54 162 G 1 0 M 65 195 G 0 9 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278535 279338 373 + . gene_id 15 ; sequence CbirOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278535 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278535 279338 . + . insertions 21 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 278535 279338 373 + . alignment_id 15 ; Query CbirOr30 ; Align 278535 11 96 ; Align 278631 44 117 ; Align 278751 83 138 ; Align 278898 129 162 ; Align 279060 184 195 ; Align 279264 249 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 335 Query range: 11 -> 124 Target range: 299650 -> 299989 12 : SerGluValHisAsnAlaHisTyrGluAspAspValArgTyrThrMetGlnLeuCysG : 31 .!!:!!:!!...||| !||||||:!!:!!|||:!!!.!||||||:!!|||:!!||| GlyGlnLeuArgAsnTyrHisTyrGlnAsnAspIleHisTyrThrLeuGlnMetCysG 299651 : GGCCAATTGAGGAATTACCATTACCAAAATGACATACATTACACGCTGCAAATGTGCC : 299708 32 : lyTrpValLeuLysProIleGlyMetTrpTyrLeuIleGlnAspSerCysSerArgAs : 50 !|||:!!|||||||||||||||:!:||| |||:!!.!..!. !!! !|||!:! lnTrpLeuLeuLysProIleGlyValTrpArgLeuLeuAspGlnArgSerSerLysLe 299709 : AATGGTTGTTGAAACCTATCGGAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCT : 299765 51 : nGluLysIleValSerIleAlaLeuIleValValCysPheSerAlaLeuCysPheVal : 69 ||| ! :!!|||||||||!.!|||!!:..!:!!|||||||||::!|||! !|||:!! uGluHisLeuValSerIleValLeuMetThrIleCysPheSerSerLeuPhePheIle 299766 : GGAACACCTCGTCTCGATCGTTCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATC : 299822 70 : LeuIleProSerGlyLeuTyrLeuPheLeuValLysGlnAspValTyrAlaLeuIleL : 89 :!!:!:|||||||||! !|||:!!|||!!!!.!:!!:!!..!:!!:!!!.! !:!:| ValLeuProSerGlyHisTyrIlePhePheAlaGluLysSerIleHisValLysValL 299823 : GTCTTGCCATCCGGTCATTACATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGA : 299882 90 : ysLeuLeuGlyProValIlePheCysLeuThrSerThrIleLysTyrCysTyrLeuGl : 108 ||:!!!!!||||||||| !|||||||||:!!|||! !:!!||||||||||||||| ! ysValPheGlyProValGlyPheCysLeuSerSerIleValLysTyrCysTyrLeuCy 299883 : AAGTATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTG : 299939 109 : yThrArgGlyAlaAlaPheGlyArgCysLeuArgHisValThrAsnAsp : 124 ! !!.!|||!.!||||||! !||||||:!!!:!|||||| !!..||| sLeuAsnGlyGlyAlaPheGluArgCysIleGlnHisValGluArgAsp 299940 : CCTGAACGGTGGCGCGTTCGAACGATGCATCCAACACGTCGAGAGAGAC : 299989 vulgar: CbirOr30 11 124 . KQ414889.1 299650 299989 + 335 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299651 299989 335 + . gene_id 16 ; sequence CbirOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299651 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299651 299989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299651 299989 335 + . alignment_id 16 ; Query CbirOr30 ; Align 299651 12 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 332 Query range: 19 -> 205 Target range: 294672 -> 295227 20 : GluAspAspValArgTyrThrMetGlnLeuCysGlyTrpValLeuLysProIleGlyM : 39 ..!:!!|||||| ! !!!:!:!::!!! !||| !! !!:!!|||||||||||||||: ArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyL 294673 : AGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTC : 294730 40 : etTrpTyrLeuIleGlnAspSerCysSerArgAsnGluLysIleValSerIleAlaLe : 58 !:||| |||||| ! ..! ! !|||!:! .!.|||:!!:!!|||||| !|| euTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLe 294731 : TTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCT : 294787 59 : uIleValValCysPheSerAlaLeuCysPheValLeuIleProSerGlyLeuTyrLeu : 77 ||||!.! !||| ! !.!!:!! |||||||||:!:|||!!!|||! !!:!! ! uIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCys 294788 : GATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGT : 294844 78 : PheLeuValLysGlnAspValTyrAlaLeuIleLysLeuLeuGlyProValIlePheC : 97 ! !!! ! ::::::||| !!!:||||||||||||||||||:!!!:!! ValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrS 294845 : GTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACT : 294904 98 : ysLeuThrSerThrIleLysTyrCysTyrLeuGlyThrArgGlyAlaAlaPheGlyAr : 116 !:!! !|||! !:!!!:!||| !!! !|||! ! !!:! ! !!|||||| !!. erMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHi 294905 : CTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCA : 294961 117 : gCysLeuArgHisValThrAsnAspTrpArgLeuValArgAspGlnAspHisArgGlu : 135 !|||:!!..! !!:!! !|||||||||!:!|||:!! !:!!! !!!:||||||! ! sCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAla 294962 : TTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCG : 295018 136 : IleMetLeuArgGlyAlaLeuIleGlyArgArgLeuThrMetLeuCysAlaIlePheL : 155 ||||||:!!!:!..!|||:!!:!! !!:!|||:!!|||:!: !! !.!!|||.!.: IleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleI 295019 : ATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAA : 295078 156 : euTyrThrGlyGlyLeuSerTyrHisThrIleLeuProLeuSerSerLysGlnAsnIl : 174 !!|||!:!..!!.!:!!|||||||||.!!|||:::|||... |||... leTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGl 295079 : TCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGA : 295135 175 : eSerGluAsnPheThrSerArgArgValProHisThrTyrProGlyTyrAspLeuTrp : 193 !:!:!!!!. !!.!!!!! !|||!.! !! !|||||||||!!:|||!:: uAsnLysLysAsnAsnThrIleArgAla---LeuProIleProGlyTyrGluLeuPhe 295136 : GAACAAGAAGAATAATACGATTCGTGCG---TTACCAATTCCTGGCTACGAGTTATTC : 295189 194 : PheAspProGluAlaSerProAlaTyrGluIleVal : 205 ! ||| !! ! :!!||||||.!!|||||||||:!! ValAspAlaTyrSerSerProThrTyrGluIleIle 295190 : GTAGACGCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: CbirOr30 19 205 . KQ414889.1 294672 295227 + 332 M 164 492 G 1 0 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294673 295227 332 + . gene_id 17 ; sequence CbirOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294673 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294673 295227 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294673 295227 332 + . alignment_id 17 ; Query CbirOr30 ; Align 294673 20 492 ; Align 295165 185 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 321 Query range: 9 -> 343 Target range: 194126 -> 196566 10 : ArgValSerGluValHisAsnAlaHisTyrGluAspAspValArgTyrThrMetGlnL : 29 ::: |||.!. !!.!|||!.!:!!|||:!! |||..!..!|||.!!:!:!:!: LysLysSerAsnTyrArgAsnValAsnTyrLysLeuAspThrGluTyrAlaValArgV 194127 : aagaaatcgAATTACCGCAACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAG : 194184 30 : euCysGlyTrpValLeuLysProIleGlyMetTrpTyrLeuIleGlnAspSerCysSe : 48 !!... ! !:!!|||! !|||||||||!!:||| ! ! ..! !|| alAlaLysAlaLeuLeuThrProIleGlyIleTrp---------ProArgGluAspSe 194185 : TAGCAAAAGCGCTTCTAACACCGATCGGTATCTGG---------CCAAGGGAGGATTC : 194232 49 : rArgAsnGluLysIleValSerIleAlaLeuIleValValCysPheSerAlaLeuCys : 67 |! !..!!!:!:!:!! ! !.!!|||! !! !! !||| !|||:!! !:!!||| rLeuArgAspArgValArgLeuPheAlaGlnThrGlyValValPheAlaLeuMetCys 194233 : TCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTTCGCTTTGATGTGC : 194289 68 : PheValLeuIleProSerGlyLeuTyrLeuPheLeuValLysGlnAspValTyrAlaL : 87 |||:!!|||:!!||| !! !:!!||| !!:!!!!! ! :!!|||:!! !! PheLeuLeuValProHisValIleTyrThrTyrPheAspCysGluAspLeuThrArgT 194290 : TTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAGGATCTGACGAGGT : 194349 88 : euIleLysLeuLeuGlyProValIlePheCysLeuThrSerThrIleLysTyrCysTy : 106 !!!:|||:!!:!!!.! !! !:!:||| !!||| !:!!! !||||||!:!!! yrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleIleLysPheTrpTh 194350 : ACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCATCAAGTTCTGGAC : 194406 107 : rLeuGlyThrArgGlyAlaAlaPheGlyArgCysLeuArgHisValThrAsnAspTrp : 125 :!! !..!!.! !! !! !.!! !! !||||||! !.!.:!! !!...!.!:: rMetIleValAsnArgLysGluIleArgPheCysLeuLeuGluMetGluThrGlnTyr 194407 : GATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGATGGAGACGCAGTAC : 194463 126 : ArgLeuValArgAspGlnAspHisArgGluIleMetLeuArgGlyAlaLeuIleGlyA : 145 ||| !|||..! !:!!!!: !!|||:!!:!:||| !!.! !!||| !||||||| ArgAspValGluCysGluGluAspArgGlnValMetThrAsnCysAlaLysIleGlyA 194464 : AGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGCGCGAAAATCGGCC : 194523 146 : rgArgLeuThrMetLeuCysAlaIlePheLeuTyrThrGlyGlyLeuSerTyrHisTh : 164 || !!!!|||! |||! ! ! !.!!! !||| !|||!.!||| !!||||||! rgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIl 194524 : GATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTTTGCCGTACCACAT : 194580 165 : rIleLeuProLeuSerSerLysGlnAsnIleSerGluAsnPheThrSerArgArgVal : 183 !||||||||||||! !|||:!!::!! !:!!!.!|||:!! !.!|||! !!:!:!! eIleLeuProLeuMetSerGluArgIleValLysGluAsp---AsnSerThrGlnIle 194581 : TATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGAT---AACAGTACTCAGATA : 194634 184 : ProHisThrTyrProGlyTyrAspLeuTrpPheAspProGluAlaSerProAlaTyrG : 203 |||! !!||| !.!! !! !!:!!!::|||! !|||! !|||||| !|||| ProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAspSerProIleTyrG 194635 : CCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGACTCGCCGATTTACG : 194694 204 : luIleValPheCysValHisCysValPheAlaLeuIleThrTyrAsnIleThrThrGl : 222 |||||..!||| ! !!!. :!!.!!::! !|||! !! :::! !.! !|| luIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuSerThrAsnCysGl 194695 : AGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGTCGACGAATTGTGG : 194751 223 : yGlyCysGlyLeuAlaAlaIlePheValThrHisAlaCysGlyGlnValGlnIleLeu : 241 | !! !.!!|||!.!|||! !.!!:!!! !|||..!|||||| ! !!:!!:!: ! yIleTyrSerLeuValAlaThrIleIleMetHisCysCysGlyLeuPheGluValThr 194752 : GATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTTGTTCGAAGTGACC : 194808 242 : MetIleGlnMetSerAspLeuValGluGlyLysArgSerLysGlyThrValGlnAsnA : 261 ! ! !::!|||..! !:!! ..! !! !!!! ! ! !:!!!:!..!| SerArgArgMetGluThrIle------SerValProThrGlyLysAspIleArgGlyA 194809 : AGCAGAAGGATGGAGACTATT------TCTGTGCCCACTGGGAAGGATATTCGGGGTA : 194862 262 : rgLeuSerValIleAlaLysHisHisValArgValLeu{Ar} >>>> Target In : 274 |||||!!!! !:!!!.!:!! !|||:!!!:!!.!:!!{!:} 1391 rgLeuArgAspValValGlnPheHisLeuLysAlaIle{Ly}++ 194863 : GACTTAGGGACGTCGTTCAGTTTCATCTGAAAGCAATT{AA}gt.............. : 194905 275 : tron 1 >>>> {g}PheSerAlaSerValAspGluValLeuArgGluIleCysLeu : 288 bp {!}|||:!!! !! !:!!!!::!!!.!|||!.! :!:! !||| ++{s}PheAlaGluMetIleGluLysAlaLeuAsnIleValPheLeu 194906 : ...........ag{a}tTCGCTGAAATGATCGAGAAAGCACTGAACATCGTGTTTCTA : 196334 289 : MetGluLeuLeuAlaSerCysLeuThrIleCysLeuLeuGluTyrTyrCysIleMet : 308 |||:!!|||!.!!!! !:!!! !||||||!!!||||||||| ! |||:!! SerGluMetLeuGlyCysThrIleIleIleCysPheLeuGluTyrGlyValIleVal+ 196335 : TCAGAGATGCTTGGCTGCACTATCATCATATGTTTCCTGGAATACGGTGTAATCGTGg : 196394 309 : >>>> Target Intron 2 >>>> GluTrpGluAsnSerAspAlaValAlaIle : 317 65 bp !!:|||! :!! ! ! .!!:!!::!!!: + ++AspTrpAlaAspHisLysThrLeuSerMet 196395 : t.........................agGATTGGGCCGATCACAAGACACTCAGCATG : 196486 318 : LeuThrTyrPheIleLeuLeuIleSerPheMetPheAsnIleLeuIlePheCysTyrI : 337 :!!|||||||||:!!|||:!!! !|||.!..!. ! |||:!:!!!|||.!!! !:!| MetThrTyrPheValLeuMetThrSerIlePheValAsnValPheIleIleSerPheI 196487 : ATGACGTACTTCGTTCTGATGACATCGATATTCGTGAACGTGTTCATAATCTCGTTCA : 196546 338 : leGlyGluLeuLeuMetGln : 343 |||||!!:! !|||! ||| leGlyAspArgLeuLysGln 196547 : TCGGTGATCGTCTTAAACAA : 196566 vulgar: CbirOr30 9 343 . KQ414889.1 194126 196566 + 321 M 31 93 G 3 0 M 134 402 G 1 0 M 70 210 G 2 0 M 23 69 S 0 2 5 0 2 I 0 1387 3 0 2 S 1 1 M 33 99 5 0 2 I 0 61 3 0 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194127 196566 321 + . gene_id 18 ; sequence CbirOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 194127 194902 . + . KQ414889.1 exonerate:protein2genome:local exon 194127 194902 . + . insertions 0 ; deletions 6 KQ414889.1 exonerate:protein2genome:local splice5 194903 194904 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 194903 196293 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 196292 196293 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 196294 196393 . + . KQ414889.1 exonerate:protein2genome:local exon 196294 196393 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 196394 196395 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 196394 196458 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 196457 196458 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 196459 196566 . + . KQ414889.1 exonerate:protein2genome:local exon 196459 196566 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194127 196566 321 + . alignment_id 18 ; Query CbirOr30 ; Align 194127 10 93 ; Align 194220 44 402 ; Align 194622 179 210 ; Align 194832 251 69 ; Align 196295 275 99 ; Align 196459 308 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 316 Query range: 130 -> 274 Target range: 300006 -> 300477 131 : GlnAspHisArgGluIleMetLeuArgGlyAlaLeuIleGlyArgArgLeuThrMetL : 150 ..!:!!|||||| !|||||||||||| !!.! !!!:.!!|||!.!||||||! : SerAsnHisArgThrIleMetLeuArgTyrValThrMetSerArgAsnLeuThrThrV 300007 : TCGAATCATCGTACGATCATGTTGAGATACGTGACTATGAGCAGAAATCTGACGACCG : 300064 151 : euCysAlaIlePheLeuTyrThrGlyGlyLeuSerTyrHisThrIleLeuProLeuSe : 169 !!||||||:!:|||||||||.!!||||||:!!||||||||||||:!::!!! !!!!! alCysAlaValPheLeuTyrAlaGlyGlyMetSerTyrHisThrValMetGlnPheLe 300065 : TGTGCGCCGTGTTTCTTTACGCAGGTGGTATGTCGTATCACACGGTGATGCAGTTCTT : 300121 170 : rSerLysGlnAsnIleSerGluAsnPheThrSerArgArgValPro<->HisThrTyr : 187 !||||||.!.!..! !|||||| !.!.:!!!!!..!!:! ! ! :!!|||||| uSerLysAspArgSerSerGluPheLeuSerArgGluLysSerLysAsnTyrThrTyr 300122 : ATCGAAGGACAGAAGCAGCGAGTTCCTGTCGAGGGAGAAAAGCAAGAATTACACTTAC : 300178 188 : Pro{G} >>>> Target Intron 1 >>>> {ly}TyrAspLeuTrpPheAspP : 196 !{.} 36 bp {!!}||||||! !!::.!!||| Lys{S}+- -+{er}TyrAspTrpPheIleAspT 300179 : AAA{A}gg.........................tg{GC}TACGATTGGTTTATCGATA : 300241 197 : roGluAlaSerProAlaTyrGluIleValPheCysValHisCysValPheAlaLeuIl : 215 !!:!!.!!||||||.!!||||||||||||||| |||||| !! |||:!!|| hrGlnThrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIl 300242 : CACAAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGAT : 300298 216 : eThrTyrAsnIleThrThrGlyGlyCysGlyLeuAlaAlaIlePheValThrHisAla : 234 |! !||||||:!:||||||!.!!.!! !.!!|||||||||||||||||||||||| ! eMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIle 300299 : CATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATC : 300355 235 : CysGlyGlnValGlnIleLeuMetIleGlnMetSerAspLeuValGluGlyLysArgS : 254 |||||||||:!!||||||! !||| ::!:!!..!|||||||||||| !!! ! !!. CysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrGlyG 300356 : TGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGGGAG : 300415 255 : erLysGlyThrValGlnAsnArgLeuSerValIleAlaLysHisHisValArgValLe : 273 .!|||! ! !! !! :!!! !||| !||||||!.!::! !!||||||!:!||||| luLysAspAspGlyProAspProLeuValValIleValArgAspHisValLysValLe 300416 : AGAAGGACGACGGTCCTGATCCTTTGGTCGTTATCGTTCGAGATCACGTGAAGGTTTT : 300472 274 : uArg : 274 |||| uArg 300473 : AAGG : 300477 vulgar: CbirOr30 130 274 . KQ414889.1 300006 300477 + 316 M 54 162 G 0 3 M 4 12 S 0 1 5 0 2 I 0 32 3 0 2 S 1 2 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300007 300477 316 + . gene_id 19 ; sequence CbirOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300007 300184 . + . KQ414889.1 exonerate:protein2genome:local exon 300007 300184 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300185 300186 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local intron 300185 300220 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300219 300220 . + . intron_id 0 ; splice_site "TG" KQ414889.1 exonerate:protein2genome:local cds 300221 300477 . + . KQ414889.1 exonerate:protein2genome:local exon 300221 300477 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300007 300477 316 + . alignment_id 19 ; Query CbirOr30 ; Align 300007 131 162 ; Align 300172 185 12 ; Align 300223 190 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 304 Query range: 24 -> 274 Target range: 262849 -> 263602 25 : TyrThrMetGlnLeuCysGlyTrpValLeuLysProIleGlyMetTrpTyrLeuIleG : 44 |||!:!:!!|||:!! ! !!|||:!!||||||||||||||| ||| ||| . TyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeu---S 262850 : TACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTG---T : 262904 45 : lnAspSerCysSerArgAsnGluLysIleValSerIleAlaLeuIleValValCysPh : 63 ..! !||| !||||||! |||::!|||:!!!!!.!! !|||||||||||||||!: erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 64 : eSerAlaLeuCysPheValLeuIleProSerGlyLeuTyrLeuPheLeuValLysGln : 82 !!!! !:!! ! !..!:!!||||||||| !|||:!!:!! !!|||! ! :!! rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 83 : AspValTyrAlaLeuIleLysLeuLeuGlyProValIlePheCysLeuThrSerThrI : 102 :!! !!:!! ! !:!::!!:!!|||||||||:!! ! !! !!!..!.!!! !| AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 103 : leLysTyrCysTyrLeuGlyThrArgGlyAlaAlaPheGlyArgCysLeuArgHisVa : 121 ||!!.||| !!::||| ! !!.!.!! !! !.!. ! !!|||:!!!:!||||| leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 122 : lThrAsnAspTrpArgLeuValArgAspGlnAspHisArgGluIleMetLeuArgGly : 140 | !.!.|||||| !!:!!|||! ! !!!: !!!:!...|||||||||!:!..! lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 141 : AlaLeuIleGlyArgArgLeuThrMetLeuCysAlaIlePheLeuTyrThrGlyGlyL : 160 ||| ! !|||||| !:!!.!! ! !||||||||||||:!! ! |||.!! !: AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 161 : euSerTyrHisThrIleLeuProLeuSerSerLysGlnAsnIleSerGluAsnPheTh : 179 !!!!! ! ! !:!! ! !!!!!!!!!!!:!! !! ! ..!! ||| || etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 180 : rSerArgArgValProHisThrTyrProGlyTyrAspLeuTrpPheAspProGluAla : 198 |!!!! !! ! ! !! !!! !|||! !||| ! ! .!! !!!:.!! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 199 : SerProAlaTyrGluIleValPheCysValHisCysValPheAlaLeuIleThrTyrA : 218 !:!|||.!! !!|||||| !!.!!..!..!!!.! !:!!! !.!!!!|||..! ! AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 219 : snIleThrThrGlyGlyCysGlyLeuAlaAlaIlePheValThrHisAlaCysGlyGl : 237 ! !|||..!|||!.!! !|||:!!.!!|||:!:|||!.! !|||||||||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 238 : nValGlnIleLeuMetIleGlnMetSerAspLeuValGluGlyLysArg<-><->Ser : 254 |:!!.!.:!:|||||| ! !!!:!!!!!:!!!|||.!. !...||| !:! nLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsn 263484 : GTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAAT : 263540 255 : LysGlyThrValGlnAsnArgLeuSerValIleAlaLysHisHisValArgValLeuA : 274 |||..! ! ! !.!..!:!!.!!||||||!.!:!!||||||:!!|||||||||| LysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeuA 263541 : AAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTGA : 263600 275 : rg : 274 || rg 263601 : GG : 263602 vulgar: CbirOr30 24 274 . KQ414889.1 262849 263602 + 304 M 18 54 G 1 0 M 210 630 G 0 6 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262850 263602 304 + . gene_id 20 ; sequence CbirOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262850 263602 . + . KQ414889.1 exonerate:protein2genome:local exon 262850 263602 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 262850 263602 304 + . alignment_id 20 ; Query CbirOr30 ; Align 262850 25 54 ; Align 262904 44 630 ; Align 263540 254 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 294 Query range: 16 -> 261 Target range: 204212 -> 204938 17 : AlaHisTyrGluAspAspValArgTyrThrMetGlnLeuCysGlyTrpValLeuLysP : 36 |||... |||!!:|||:!!||||||.!!! !::!!! ! !:!!||| ! AlaArgAlaGluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyI 204213 : GCGAGGGCAGAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGA : 204270 37 : roIleGlyMetTrpTyrLeuIleGlnAspSerCysSerArgAsnGluLysIleValSe : 55 !:!!||| !||| :!! ! !:!!||| |||! ! ! !!:!:!!||| ! leValGlyAlaTrpProIleProValAsnSer---SerProPheThrArgLeuValAr 204271 : TAGTCGGTGCGTGGCCGATTCCAGTGAACTCC---TCTCCGTTCACGAGGCTAGTACG : 204324 56 : rIleAlaLeuIleValValCysPheSerAlaLeuCysPheValLeuIleProSerGly : 74 ! ! ! ! !|||||| !::: ... ...:!!:!!:!!|||.!! ! gArgIleGluHisValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeu 204325 : GCGAATAGAACACGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTC : 204381 75 : LeuTyrLeuPheLeuValLysGlnAspValTyrAlaLeuIleLysLeuLeuGlyProV : 94 ||||||:!!|||||| !:!!:!!:!!! ! ! !! !:!:|||:!!|||||||||: LeuTyrValPheLeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProI 204382 : TTGTACGTGTTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGA : 204441 95 : alIlePheCysLeuThrSerThrIleLysTyrCysTyrLeuGlyThrArgGlyAlaAl : 113 !!:!: !||| !! !..! !.!!||||||! ! !:!! ! !||| !! ! leValAsnCysSerIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLy 204442 : TCGTGAACTGCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAA : 204498 114 : aPheGlyArgCysLeuArgHisValThrAsnAspTrpArgLeuValArgAspGlnAsp : 132 !.!! !!:! !!|||!.! !:!!! !..!||||||! ! !!.!! !||| !!: sIleGlnLysSerLeuAsnThrIleArgArgAspTrpIleGluAlaThrAsp---Glu 204499 : AATTCAGAAGAGTTTGAACACCATCAGACGCGACTGGATAGAGGCTACGGAT---GAA : 204552 133 : HisArgGluIleMetLeuArgGlyAlaLeuIleGlyArgArgLeuThrMetLeuCysA : 152 :!!||| !|||.!.! ! ! !||| !||||||||||||:!! !:!!:!!...| AsnArgLeuIlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaA 204553 : AATCGGTTGATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAG : 204612 153 : laIlePheLeuTyrThrGlyGlyLeuSerTyrHisThrIleLeuProLeuSerSerLy : 171 || ! !:!!||| !|||||||||!!!|||...|||||||||||||||! !!!! laAlaThrMetTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGl 204613 : CCGCCACTATGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGG : 204669 172 : sGlnAsnIleSerGluAsnPheThrSerArgArgValProHisThrTyrProGlyTyr : 190 ! !! !:!!!!! :!! !..!!!!! !||| ||| !!! !|||! !||| yThrIleValThrProAspAsnValThrIleArg---ProLeuProCysProValTyr 204670 : AACGATCGTAACACCTGATAACGTTACCATAAGG---CCGTTGCCGTGTCCGGTTtac : 204723 191 : AspLeuTrpPheAspProGluAlaSerProAlaTyrGluIleValPheCysValHisC : 210 ::::::|||::: !:!! !|||||| !||||||||||||||| :!!!!. PheValPhePheAsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnI 204724 : tttgttttctttaacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAA : 204783 211 : ysValPheAlaLeuIleThrTyrAsnIleThrThrGlyGlyCysGlyLeuAlaAlaIl : 229 !:!! !!.!!!!:!!|||||| !:!!! !!:!||| !||||||:!!..!|||:! leMetAlaGlyPheValThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLe 204784 : TTATGGCTGGTTTTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCT : 204840 230 : ePheValThrHisAlaCysGlyGlnValGlnIleLeuMetIleGlnMetSerAspLeu : 248 :|||||| !|||||||||.!!..!:!!::!||||||:!!! !:!!|||!:!! ||| uPheValLeuHisAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeu 204841 : GTTCGTTCTCCACGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTT : 204897 249 : ValGluGlyLysArgSerLysGlyThrValGlnAsnArg : 261 |||!!: ! ! !! !! ! !|||:!! !:!!||| ValAspLysAlaAspMetThrGluThrLeuValHisArg 204898 : GTGGATAAGGCGGACATGACCGAGACACTTGTGCACAGG : 204938 vulgar: CbirOr30 16 261 . KQ414889.1 204212 204938 + 294 M 30 90 G 1 0 M 83 249 G 1 0 M 51 153 G 1 0 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204213 204938 294 + . gene_id 21 ; sequence CbirOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204213 204938 . + . KQ414889.1 exonerate:protein2genome:local exon 204213 204938 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 204213 204938 294 + . alignment_id 21 ; Query CbirOr30 ; Align 204213 17 90 ; Align 204303 48 249 ; Align 204552 132 153 ; Align 204705 184 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 271 Query range: 284 -> 412 Target range: 280022 -> 280551 285 : GluIleCysLeuMetGluLeuLeuAlaSerCysLeuThrIleCysLeuLeuGluTyrT : 304 !!::!!|||! !.!..!.:!!:!! !:!! :!!.!!.!! !:!!! !..!! ! AspLeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerLeuS 280023 : GACTTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGTTGT : 280080 305 : yrCysIleMetGluTrpGluAsnSerAspAlaValAlaIleLeuThrTyrPheIleLe : 323 !.!! !|||||||||.!.!:!||||||:!!!.!! !!!||||||!!.!!:!! erValPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPh 280081 : CAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTT : 280137 324 : uLeuIleSerPheMetPheAsnIleLeuIlePheCysTyrIleGlyGluLeuLeuMet : 342 !|||||||||!!.! !||||||:!!!!!|||.!!|||||||||||||||:!!||| eLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSer 280138 : TCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCC : 280194 343 : GlnGln >>>> Target Intron 1 >>>> TyrSerThrValAlaSerAlaVa : 352 :!!||| 74 bp ! !! !! !|||!.! !:!!.. GluGln++ ++CysLeuLysValGlyValSerTh 280195 : GAACaggt.........................agTGCTTAAAAGTCGGCGTGTCAAC : 280298 353 : lTyrGlyIleAsnTrpTyrAspLeuSerGlyLysLysAlaLeuAspLeuLysLeuIle : 371 !||| !|||:!!|||||| !||| !!||||||||||||! !! !|||! !|||||| rTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIle 280299 : TTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATA : 280355 372 : IleAlaMetSerArgTyrProValLysLeuThrAlaGlyLysPheValAspLeuSerL : 391 .!!|||:!!|||!.!! ! !!:!!||||||||||||||||||.!!:!!|||||||||| PheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerL 280356 : TTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTT : 280415 392 : euAsnThrPheGlyAla >>>> Target Intron 2 >>>> ValLeuArgThr : 400 ||!:!!:!||| !!::! 71 bp ||||||!:!||| euSerSerPheCysSer++ ++ValLeuLysThr 280416 : TAAGCAGCTTCTGCAGCgt.........................agGTGTTAAAAACG : 280513 401 : SerValValTyrLeuAsnLeuLeuArgThrValThr : 412 :!! !!!.!||||||!:!||||||||||||:!!||| AlaPheAlaTyrLeuSerLeuLeuArgThrLeuThr 280514 : GCATTCGCATATCTGAGCTTATTACGTACGCTTACC : 280551 vulgar: CbirOr30 284 412 . KQ414889.1 280022 280551 + 271 M 60 180 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280023 280551 271 + . gene_id 22 ; sequence CbirOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280023 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280023 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280551 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280023 280551 271 + . alignment_id 22 ; Query CbirOr30 ; Align 280023 285 180 ; Align 280277 345 156 ; Align 280504 397 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 260 Query range: 305 -> 412 Target range: 224317 -> 224770 306 : IleMetGluTrpGluAsnSerAspAlaValAlaIleLeuThrTyrPheIleLeuLeuI : 325 .!!...||||||...:::||| !! !..!::! :!!||||||||||||||||||! PheGlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuM 224318 : TTTCaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCA : 224375 326 : leSerPheMetPheAsnIleLeuIlePheCysTyrIleGlyGluLeuLeuMetGlnGl : 344 !:|||... |||||||||...||||||||||||||||||||||||:!! :!!|| etSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl 224376 : TGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAca : 224432 345 : n >>>> Target Intron 1 >>>> TyrSerThrValAlaSerAlaValTyrG : 354 | 65 bp ... :::.....!!.! !||| n++ ++CysGluLysIleGlyGlnValSerTyrM 224433 : ggt.........................agtgtgaaaaaattggacaAGTGTCGTACA : 224527 355 : lyIleAsnTrpTyrAspLeuSerGlyLysLysAlaLeuAspLeuLysLeuIleIleAl : 373 !|||:!!|||||| |||!!!|||!!.||| !||| !! !! ||||||||||| etIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAl 224528 : TGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGC : 224584 374 : aMetSerArgTyrProValLysLeuThrAlaGlyLysPheValAspLeuSerLeuAsn : 392 |||||||!.!! ! !!:!!|||||||||||||||!!..!.|||!!:|||!!!|||!.! aMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThr 224585 : GATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACC : 224641 393 : ThrPheGlyAla >>>> Target Intron 2 >>>> ValLeuArgThrSerVa : 402 |||||||||! ! 67 bp |||:!!!:!|||:!!|| ThrPheGlyAsp++ ++ValValLysThrAlaVa 224642 : ACTTTCGGTGACgt.........................agGTTGTCAAGACAGCTGT : 224738 403 : lValTyrLeuAsnLeuLeuArgThrValThr : 412 |!.!!:!||||||:!!|||||||||:!!||| lAlaPheLeuAsnValLeuArgThrLeuThr 224739 : CGCATTTTTGAACGTGTTACGAACATTGact : 224770 vulgar: CbirOr30 305 412 . KQ414889.1 224317 224770 + 260 M 39 117 5 0 2 I 0 61 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224318 224770 260 + . gene_id 23 ; sequence CbirOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224318 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224318 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224655 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224655 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224656 224657 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224656 224722 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 224721 224722 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 224723 224770 . + . KQ414889.1 exonerate:protein2genome:local exon 224723 224770 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224318 224770 260 + . alignment_id 23 ; Query CbirOr30 ; Align 224318 306 117 ; Align 224500 345 156 ; Align 224723 397 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 256 Query range: 284 -> 412 Target range: 286809 -> 287338 285 : GluIleCysLeuMetGluLeuLeuAlaSerCysLeuThrIleCysLeuLeuGluTyrT : 304 !!::!:|||! ! .!. !:!! !:!! :!!.!!.!! !:!!! !..!! ! AspLeuCysTyrTyrHisThrValMetAlaIleIleAlaPheValMetTyrSerLeuS 286810 : GACTTGTGTTATTACCATACTGTAATGGCAATAATTGCATTCGTCATGTACTCGTTGT : 286867 305 : yrCysIleMetGluTrpGluAsnSerAspAlaValAlaIleLeuThrTyrPheIleLe : 323 !.!! !|||||||||.!.|||!!:.!!:!!!.!! :!!||||||! !! || erValPhe***GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLe 286868 : CAGTTTTCTAGGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTT : 286924 324 : uLeuIleSerPheMetPheAsnIleLeuIlePheCysTyrIleGlyGluLeuLeuMet : 342 ||||:!!||||||! !||||||:!!!!!|||.!!|||||||||||||||:!!||| uLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSer 286925 : GCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCC : 286981 343 : GlnGln >>>> Target Intron 1 >>>> TyrSerThrValAlaSerAlaVa : 352 :!!||| 74 bp !! !! !|||!.!! !:!!.. GluGln++ ++CysLeuLysValGlyLeuSerTh 286982 : GAACaggt.........................agtGCTTAAAAGTCGGCTTGTCAAC : 287085 353 : lTyrGlyIleAsnTrpTyrAspLeuSerGlyLysLysAlaLeuAspLeuLysLeuIle : 371 !||| !|||:!!|||||| !||| !!||||||! !|||! !! !|||! !|||||| rTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIle 287086 : TTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATA : 287142 372 : IleAlaMetSerArgTyrProValLysLeuThrAlaGlyLysPheValAspLeuSerL : 391 .!!|||:!!|||!.!! ! !!:!!||||||||||||||||||.!!:!!|||||||||| PheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerL 287143 : TTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTT : 287202 392 : euAsnThrPheGlyAla >>>> Target Intron 2 >>>> ValLeuArgThr : 400 ||!:!!:!||| !!::! 71 bp ||||||!:!:!! euSerSerPheCysSer++ ++ValLeuLysSer 287203 : TAAGCAGCTTCTGCAGCgt.........................agGTGTTGAAATCG : 287300 401 : SerValValTyrLeuAsnLeuLeuArgThrValThr : 412 :!! !!!.!||||||!:!||||||||||||:!!||| AlaPheAlaTyrLeuSerLeuLeuArgThrLeuThr 287301 : GCATTCGCATATCTGAGCTTATTACGTACGCTAACC : 287338 vulgar: CbirOr30 284 412 . KQ414889.1 286809 287338 + 256 M 60 180 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286810 287338 256 + . gene_id 24 ; sequence CbirOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286810 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286810 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287220 287221 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 287220 287290 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 287289 287290 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 287291 287338 . + . KQ414889.1 exonerate:protein2genome:local exon 287291 287338 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286810 287338 256 + . alignment_id 24 ; Query CbirOr30 ; Align 286810 285 180 ; Align 287064 345 156 ; Align 287291 397 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 236 Query range: 307 -> 412 Target range: 219328 -> 219803 308 : GluTrpGluAsnSerAspAlaValAlaIleLeuThrTyrPheIleLeuLeuIleSerP : 327 ||||||:!!:::!:!|||!.!..!::! !:!!||||||.!!|||||||||||||||. GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 328 : heMetPheAsnIleLeuIlePheCysTyrIleGlyGluLeuLeuMetGlnGln >>> : 345 !. |||||||||...|||||||||||||||||||||:!!:!! :!!||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln++ 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAggt... : 219442 346 : > Target Intron 1 >>>> TyrSerThrValAlaSerAlaValTyrGlyIleA : 356 73 bp ! :::...... !||| !|||. ++CysArgLysIleGlyGluMetSerTyrMetIleG 219443 : ......................agTGtaggaaaattggagaaatgtCGTACATGATCG : 219546 357 : snTrpTyrAspLeuSerGlyLysLysAlaLeuAspLeuLysLeuIleIleAlaMetSe : 375 !.|||||| |||!!!||||||||| !||| ! |||! !||||||||||| luTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaMetSe 219547 : AATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTATGTC : 219603 376 : rArgTyrProValLysLeuThrAlaGlyLysPheValAspLeuSerLeuAsnThrPhe : 394 |!.!! ! !!:!!|||||||||||||||!!..!.|||!!:||||||:!!!:!|||||| rAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPhe 219604 : GAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCACTTTT : 219660 395 : GlyAla >>>> Target Intron 2 >>>> ValLeuArgThrSerValValTy : 404 !! ! 87 bp |||:!!!:!|||:!!|||..!!: ThrAsp++ ++ValValLysThrAlaValThrPh 219661 : ACCGACgt.........................agGTCGTTAAGACTGCAGTCACGTT : 219777 405 : rLeuAsnLeuLeuArgThrValThr : 412 !||||||:!!|||||||||:!!||| eLeuAsnValLeuArgThrLeuThr 219778 : TCTGAATGTACTACGAACATTGACT : 219803 vulgar: CbirOr30 307 412 . KQ414889.1 219328 219803 + 236 M 37 111 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 83 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219803 236 + . gene_id 25 ; sequence CbirOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219668 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219668 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219669 219670 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219669 219755 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219754 219755 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219756 219803 . + . KQ414889.1 exonerate:protein2genome:local exon 219756 219803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219803 236 + . alignment_id 25 ; Query CbirOr30 ; Align 219329 308 111 ; Align 219513 345 156 ; Align 219756 397 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 229 Query range: 307 -> 412 Target range: 277371 -> 277842 308 : GluTrpGluAsnSerAspAlaValAlaIleLeuThrTyrPheIleLeuLeuIleSerP : 327 ||||||...:!!||||||!.! !.!!!!: !|||:!!|||!!::!!|||||||||. GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 328 : heMetPheAsnIleLeuIlePheCysTyrIleGlyGluLeuLeuMetGlnGln >>> : 345 !. |||||||||... ! ! |||||||||||||||:!!|||! :!!||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 346 : > Target Intron 1 >>>> TyrSerThrValAlaSerAlaValTyrGlyIleA : 356 72 bp ! !!.!! !|||!.!..!!.!|||||| !! | ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 357 : snTrpTyrAspLeuSerGlyLysLysAlaLeuAspLeuLysLeuIleIleAlaMetSe : 375 |||||||| !!||| !!! !||| ! !|||:!!||| |||||||||:!!! || snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 376 : rArgTyrProValLysLeuThrAlaGlyLysPheValAspLeuSerLeuAsnThrPhe : 394 |!!! :::|||:::||||||||||||...:::...:::|||:!! !!|||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 395 : GlyAla >>>> Target Intron 2 >>>> ValLeuArgThrSerValValTy : 404 |||! ! 84 bp |||:!!!:!|||!!! !!...|| GlyAsp++ ++ValIleLysThrThrPheAlaTy 277703 : GGCGATgt.........................agGTAATAAAAACCACTTTCgcgta : 277816 405 : rLeuAsnLeuLeuArgThrValThr : 412 |||||||:::|||||| !..!||| rLeuAsnIleLeuArgGlnThrThr 277817 : tttaaatattctacgCCAAACGACG : 277842 vulgar: CbirOr30 307 412 . KQ414889.1 277371 277842 + 229 M 37 111 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277842 229 + . gene_id 26 ; sequence CbirOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277842 229 + . alignment_id 26 ; Query CbirOr30 ; Align 277372 308 111 ; Align 277555 345 156 ; Align 277795 397 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 220 Query range: 299 -> 410 Target range: 214605 -> 215130 300 : LeuLeuGluTyrTyrCysIleMetGluTrpGluAsnSerAspAlaValAlaIleLeuT : 319 :::::::::::: ::: ||||||.!.:::!:!:!! !..!.!!! !:!!| IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 320 : hrTyrPheIleLeuLeuIleSerPheMetPheAsnIleLeuIlePheCysTyrIleGl : 338 ||||| ! :!:|||! !||||||... |||||||||...||||||||||||||||| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 339 : yGluLeu{Le} >>>> Target Intron 1 >>>> {u}MetGlnGlnTyrSer : 346 |||||||{:!} 123 bp {!}:!:||||||! !!.! yGluLeu{Va}++ +-{l}LeuGlnGlnCysLys 214721 : CGAGCTT{GT}gt.........................at{G}TTACAACAGTGCAAA : 214867 347 : ThrValAlaSerAlaValTyrGlyIleAsnTrpTyrAspLeuSerGlyLysLysAlaL : 366 ! !|||!.!..!!.! !||| !|||.!.|||||| ||| !!|||!!.||| !| LysValGlyGluValSerTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysL 214868 : AAGGTCGGAGAAGTATCGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGC : 214927 367 : euAspLeuLysLeuIleIleAlaMetSerArgTyrProValLysLeuThrAlaGlyLy : 385 || !! !! ||||||!!:|||||||||!.!! !!||||||!!!|||||||||!! euCysCysIleLeuIleMetAlaMetSerAsnSerSerValLysPheThrAlaGlyAs 214928 : TCTGTTGCATTTTGATCATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAA : 214984 386 : sPheValAspLeuSerLeuAsnThrPheGlyAla >>>> Target Intron 2 > : 397 ..!.|||!!:||||||:!!!:!||||||.!!::! 69 bp nMetValGluLeuSerIleSerThrPheSerSer++ 214985 : CATGGTAGAACTGTCTATCAGCACTTTCAGCAGTgt...................... : 215022 398 : >>> ValLeuArgThrSerValValTyrLeuAsnLeuLeuArgThr : 410 |||:!!||||||||||||!.!!:!|||||| !||||||||| ++ValValArgThrSerValAlaPheLeuAsnAlaLeuArgThr 215023 : ...agGTTGTTCGAACATCGGTTGCCTTCTTAAACGCGTTACgaaca : 215130 vulgar: CbirOr30 299 410 . KQ414889.1 214605 215130 + 220 M 41 123 S 0 2 5 0 2 I 0 119 3 0 2 S 1 1 M 55 165 5 0 2 I 0 65 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 215130 220 + . gene_id 27 ; sequence CbirOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214606 214730 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214730 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214731 214732 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214731 214853 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214852 214853 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 214854 215019 . + . KQ414889.1 exonerate:protein2genome:local exon 214854 215019 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 215020 215021 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 215020 215088 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 215087 215088 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 215089 215130 . + . KQ414889.1 exonerate:protein2genome:local exon 215089 215130 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 215130 220 + . alignment_id 27 ; Query CbirOr30 ; Align 214606 300 123 ; Align 214855 342 165 ; Align 215089 397 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 217 Query range: 307 -> 412 Target range: 272836 -> 273302 308 : GluTrpGluAsnSerAspAlaValAlaIleLeuThrTyrPheIleLeuLeuIleSerP : 327 |||||| :!! !||| ! !::!:!! !|||||||||!!::!!|||||||||. GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 328 : heMetPheAsnIleLeuIlePheCysTyrIleGlyGluLeuLeuMetGlnGln >>> : 345 !. |||||||||...||| |||||||||||||||:!!|||! !:!!::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 346 : > Target Intron 1 >>>> TyrSerThrValAlaSerAlaValTyrGlyIleA : 356 70 bp ... :::.....!!.!|||||| !! | ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 357 : snTrpTyrAspLeuSerGlyLysLysAlaLeuAspLeuLysLeuIleIleAlaMetSe : 375 |||||||| !!||| !!|||||| ! !|||||||||! |||||||||:!!! !! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 376 : rArgTyrProValLysLeuThrAlaGlyLysPheValAspLeuSerLeuAsnThrPhe : 394 !!!! ! !:!!|||:!!|||||||||!:!.!.||| !:!!|||:!! !!|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 395 : GlyAla >>>> Target Intron 2 >>>> ValLeuArgThrSerValValTy : 404 |||! ! 81 bp |||:!!!:!!:!:!! !!!.!|| GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 405 : rLeuAsnLeuLeuArgThrValThr : 412 |||||||:!!|||||| !..!||| rLeuAsnMetLeuArgGlnThrThr 273277 : CTTAAATATGCTACGACAAACGACA : 273302 vulgar: CbirOr30 307 412 . KQ414889.1 272836 273302 + 217 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273302 217 + . gene_id 28 ; sequence CbirOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273302 217 + . alignment_id 28 ; Query CbirOr30 ; Align 272837 308 111 ; Align 273018 345 156 ; Align 273255 397 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 198 Query range: 307 -> 394 Target range: 206050 -> 206392 308 : GluTrpGluAsnSerAspAlaValAlaIleLeuThrTyrPheIleLeuLeuIleSerP : 327 ||||||||||||!:!:!!.!!..!|||:!!:!!..!|||.!!! |||! !||||||! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 328 : heMetPheAsnIleLeuIlePheCysTyrIleGlyGluLeuLeuMetGlnGln >>> : 345 !! ||| !:!!!!!|||.!.||||||||||||:!!||||||!!:.!.||| ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 346 : > Target Intron 1 >>>> TyrSerThrValAlaSerAlaValTyrGlyIleA : 356 81 bp !! !..!|||!.!! !.!! !! ! !:!:| ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 357 : snTrpTyrAspLeuSerGlyLysLysAlaLeuAspLeuLysLeuIleIleAlaMetSe : 375 |||||||| !||| !!..!!:! ! |||! !..!:!!! !||||||||||||||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 376 : rArgTyrProValLysLeuThrAlaGlyLysPheValAspLeuSerLeuAsnThrPhe : 394 |!.!||||||:!!||||||||||||||||||.!. !!!!::!!|||||| !!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 vulgar: CbirOr30 307 394 . KQ414889.1 206050 206392 + 198 M 37 111 5 0 2 I 0 77 3 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206392 198 + . gene_id 29 ; sequence CbirOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206392 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206392 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206392 198 + . alignment_id 29 ; Query CbirOr30 ; Align 206051 308 111 ; Align 206243 345 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 343 -> 403 Target range: 297641 -> 297821 344 : GlnTyrSerThrValAlaSerAlaValTyrGlyIleAsnTrpTyrAspLeuSerGlyL : 363 ||| !..!! ! !!!.!!:!|||!.!|||..!|||.!.||||||:!!||| !! !! GlnAlaGluLysPheGlyAsnAlaAlaTyrAsnIleGluTrpTyrAsnLeuProProA 297642 : CAGGCTGAAAAATTCGGCAATGCAGCTTATAACATCGAATGGTACAACTTACCGCCAA : 297699 364 : ysLysAlaLeuAspLeuLysLeuIleIleAlaMetSerArgTyrProValLysLeuTh : 382 !.!:!|||||||||||| !|||!!:|||!.!!!::!!!:!!:!||| !!:!||||| snArgAlaLeuAspLeuValLeuMetIleGlyIleAlaLysPheProProArgLeuTh 297700 : ACAGGGCTCTCGATCTGGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCAC : 297756 383 : rAlaGlyLysPheValAspLeuSerLeuAsnThrPheGlyAlaValLeuArgThrSer : 401 |...||||||... |||:::|||:!!|||||||||.!!||||||! !||| ||| rGlyGlyLysIlePheAspIleSerIleAsnThrPheSerAlaValArgArgGlnSer 297757 : AggtggaaaaatattcgatatatCGATAAACACGTTCAGTGCCGTACGTAgacaaagt : 297813 402 : ValVal : 403 :::::: LeuIle 297814 : ttaatt : 297821 vulgar: CbirOr30 343 403 . KQ414889.1 297641 297821 + 146 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297642 297821 146 + . gene_id 30 ; sequence CbirOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297642 297821 . + . KQ414889.1 exonerate:protein2genome:local exon 297642 297821 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297642 297821 146 + . alignment_id 30 ; Query CbirOr30 ; Align 297642 344 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 343 -> 409 Target range: 264723 -> 265001 344 : GlnTyrSerThrValAlaSerAlaValTyrGlyIleAsnTrpTyrAspLeuSerGlyL : 363 |||! !!.!! !|||!.!..!!.!|||||| ! ||||||||| !!||| !! !| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 364 : ysLysAlaLeuAspLeuLysLeuIleIleAlaMetSerArgTyrProValLysLeuTh : 382 || ! !|||||||||! ||||||||| !! |||!!! ! !!|||!!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 383 : rAlaGlyLysPheValAspLeuSerLeuAsnThrPheGlyAla >>>> Target I : 397 ||||||||||.!.:!! !!:!!|||:!! !!||||||.!!! ! 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 398 : ntron 1 >>>> ValLeuArgThrSerValValTyrLeuAsnLeuLeuArg : 409 bp |||:!!!:!:!!||| !!..!|||||||||||||||||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArg 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGC : 265001 vulgar: CbirOr30 343 409 . KQ414889.1 264723 265001 + 125 M 53 159 5 0 2 I 0 76 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265001 125 + . gene_id 31 ; sequence CbirOr30 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265001 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265001 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265001 125 + . alignment_id 31 ; Query CbirOr30 ; Align 264724 344 159 ; Align 264963 397 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 303 -> 344 Target range: 210651 -> 210774 304 : TyrCysIleMetGluTrpGluAsnSerAspAlaValAlaIleLeuThrTyrPheIleL : 323 !:! !:!! !||||||!!:::!!.!||| !!:!!::!! !|||||||||.!.:!!| PheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValL 210652 : TTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTAC : 210709 324 : euLeuIleSerPheMetPheAsnIleLeuIlePheCysTyrIleGlyGluLeuLeuMe : 342 |||||! !||| !!! !|||||||||!!!|||||||||||||||||||||:!!||| euLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAl 210710 : TCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGC : 210766 343 : tGlnGln : 344 :!!||| aGluGln 210767 : TGAACAg : 210774 vulgar: CbirOr30 303 344 . KQ414889.1 210651 210774 + 122 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210652 210774 122 + . gene_id 32 ; sequence CbirOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 210652 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210652 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210652 210774 122 + . alignment_id 32 ; Query CbirOr30 ; Align 210652 304 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 342 -> 397 Target range: 234982 -> 235147 343 : GlnGlnTyrSerThrValAlaSerAlaValTyrGlyIleAsnTrpTyrAspLeuSerG : 362 ||||||! !!!!! !|||!.!..! !|||||| !! !.!.|||||| ||| !! GlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProH 234983 : CAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTC : 235040 363 : lyLysLysAlaLeuAspLeuLysLeuIleIleAlaMetSerArgTyrProValLysLe : 381 !|||! ||||||! !||| !:!!||||||:!!! !|||!!! !:!!|||:! isLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIl 235041 : ATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAAT : 235097 382 : uThrAlaGlyLysPheValAspLeuSerLeuAsnThrPheGlyAlaVal : 397 !|||||||||||||||:!!.!.:!!|||:!! |||||||||! !||| eThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235098 : CACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: CbirOr30 342 397 . KQ414889.1 234982 235147 + 119 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234983 235147 119 + . gene_id 33 ; sequence CbirOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234983 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234983 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234983 235147 119 + . alignment_id 33 ; Query CbirOr30 ; Align 234983 343 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 343 -> 402 Target range: 238625 -> 238802 344 : GlnTyrSerThrValAlaSerAlaValTyrGlyIleAsnTrpTyrAspLeuSerGlyL : 363 |||! !! !! !|||!.!..!!.!|||||| !! !:!!|||||| !!||| !! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 364 : ysLysAlaLeuAspLeuLysLeuIleIleAlaMetSerArgTyrProValLysLeuTh : 382 :!!:! !|||||||||! ||||||||| ! |||!.! !||||||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 383 : rAlaGlyLysPheValAspLeuSerLeuAsnThrPheGlyAlaValLeuArgThrSer : 401 |||||||||| ! :!! !!:!!|||||| !!|||||||||! !||| !..!|||!:! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 402 : Val : 402 :!! Leu 238798 : CTT : 238802 vulgar: CbirOr30 343 402 . KQ414889.1 238625 238802 + 114 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238802 114 + . gene_id 34 ; sequence CbirOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238802 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238802 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238802 114 + . alignment_id 34 ; Query CbirOr30 ; Align 238626 344 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 305 -> 344 Target range: 264531 -> 264648 306 : IleMetGluTrpGluAsnSerAspAlaValAlaIleLeuThrTyrPheIleLeuLeuI : 325 .!!..!|||||||||!:! ||| ::: !|||||||||!!::!!|||| PheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuI 264532 : TTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATACTGA : 264589 326 : leSerPheMetPheAsnIleLeuIlePheCysTyrIleGlyGluLeuLeuMetGlnGl : 344 |||||.!. !||||||!!!:!!.!.|||||||||||||||:!!|||! :!!|| leSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGl 264590 : TATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGca : 264646 345 : n : 344 | n 264647 : g : 264648 vulgar: CbirOr30 305 344 . KQ414889.1 264531 264648 + 107 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264532 264648 107 + . gene_id 35 ; sequence CbirOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264532 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264532 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264532 264648 107 + . alignment_id 35 ; Query CbirOr30 ; Align 264532 306 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 304 -> 344 Target range: 244432 -> 244552 305 : CysIleMetGluTrpGluAsnSerAspAlaValAlaIleLeuThrTyrPheIleLeuL : 324 |||... !||||||! !.!.||||||||| ! !:!!:!!|||||||||||| !| CysPhe***GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheIleAlaL 244433 : tgtttctaGGAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTATAGCAC : 244490 325 : euIleSerPheMetPheAsnIleLeuIlePheCysTyrIleGlyGluLeuLeuMetGl : 343 ||:!!:!!.!!:!:! !|||! !!!!|||.!!|||||||||.!!!!: !|||! :! euValAlaIleValSerAsnThrPheIleLeuCysTyrIleSerAspArgLeuThrGl 244491 : TCGTTGCTATTGTTTCTAATACATTTATACTCTGTTATATCAGCGACAGGCTGACAGA : 244547 344 : nGln : 344 !||| uGln 244548 : ACAG : 244552 vulgar: CbirOr30 304 344 . KQ414889.1 244432 244552 + 102 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244433 244552 102 + . gene_id 36 ; sequence CbirOr30 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244433 244552 . + . KQ414889.1 exonerate:protein2genome:local exon 244433 244552 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244433 244552 102 + . alignment_id 36 ; Query CbirOr30 ; Align 244433 305 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 849 Query range: 12 -> 387 Target range: 232450 -> 235147 13 : AspAsnAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpP : 32 ||| !!!!:||||||:!!|||:!!|||||||||||||||! !|||!!:|||||||||| AspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpP 232451 : GACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGC : 232508 33 : roCysIleValSerArgThrThrTrpThrIlePheLeuProLeuGlnIleValIleSe : 51 || !!:!!..!..!! !:!!! ! ! !.!.||| !! !! !:!: !:!!!! roArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuTh 232509 : CGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCAC : 232565 52 : rTrpIleIleValAlaIleIleThr<->ValProCysLeuLeuHisValLeuPheGlu : 69 !!! ! !:!! !||| !:!! |||||||||:!!||| !:!!||||||||| rCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGlu 232566 : CTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAA : 232622 70 : ValLysAspIleGlnThrArgLeuHisValIleGlyProLeuLeuHisArgLeuIleG : 89 ! !! !..!:!!:!! !|||:!! ! !|||||||||:!! !||| !|||!!:| AspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetG 232623 : GACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGG : 232682 90 : lyTrpValAsnTyrTrpThrLeuLeuAsnCysSerAspAspIleArgAsnCysIleLe : 108 || :!!||||||!! !|||||| :!!:!!||||||! ! !!|||:!: lyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGl 232683 : GTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGA : 232739 109 : uHisMetGluThrAspTrpLysThrMetArgArgThrGluAspArgGluValMetLeu : 127 !!!.:!!:!! !||||||::!!.!:!:!:!!:! !!! !!|||!!::!!|||||| uGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeu 232740 : ACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTG : 232796 128 : GlnTyrAlaLysPheGlyArgPheLeuAlaIleValCysGlyLeuIleMetHisGlyG : 147 :!! !!||||||.!!||||||! :!!||| !:!!..!!.!!!! !|||||| !| LysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrG 232797 : AAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCG : 232856 148 : lyThrLeuLeuPheSerIleValLysSerIleLysThrIleThrValThrIleGlyAs : 166 ||..! !! ! !..!||||||! !.!!:!!:::! !! !||| !! !:!:||||| lyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAs 232857 : GTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAA : 232913 167 : nGluThrPheLeuThrHisProMetThrCysProSerTyrSerLysIleIleAspThr : 185 ||||!:!!:!! !! !:!!|||:!: !!||| !!! !|||!!!|||:!:!!:|||||| nGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThr 232914 : CGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACC : 232970 186 : ArgLeuSerProValAsnGluIleAlaIleValMetGlnPheThrSerThrLeuIleV : 205 |||!!!||||||..!||||||||| !.!!|||:!:|||! ! !||| !!!!|||| ArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleV 232971 : AGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCG : 233030 206 : alSerSerAlaThrValGlyAlaCysSerLeuThrAlaValPheAlaMetHisAlaCy : 224 ||!:!|||!.!|||||||||||||||.!!||| !||||||.!.|||||||||||||| alAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCy 233031 : TGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTG : 233087 225 : sGlyGlnLeuAsnLeuLeuTyrSerGlnLeuAsnLysLeuValGluAspGlnGluLys : 243 |||||||||||||:!!:!! |||:!!|||:!! ! ||||||!!:! :!!! !:!! sGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGlyGln 233088 : CGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAG : 233144 244 : GluAsnTyrIleAlaGluArgArgLeuAlaSerIleValSerHisHisLeuArgValL : 263 |||.!. :!!|||:!!|||!:!|||!.!! !||||||..!||||||||||||..!| GluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrL 233145 : GAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACAT : 233204 264 : eu{Se} >>>> Target Intron 1 >>>> {r}PheIleSerArgValGluSe : 271 ||{||} 1315 bp {|}|||||| !!!.!:!!|||!: eu{Se}++ ++{r}PheIleArgAsnIleGluAs 233205 : TA{AG}gt.........................ag{T}TTTATACGGAATATAGAGAA : 234543 272 : rIleIleHisLysIleAlaLeuValGluLeuValGlySerThrIleAlaMetCysLeu : 290 !:!!!!::!! !|||..!||||||||||||||||||!!!|||:!: !||||||:!! nValMetAsnLeuIleCysLeuValGluLeuValGlyCysThrLeuAsnMetCysMet 234544 : CGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACGTTGAACATGTGCATG : 234600 291 : ValGlyTyrTyrIleIleLeuAspLeuAsn >>>> Target Intron 2 >>>> : 301 :!!! !||||||:!! |||!.. 189 bp LeuGluTyrTyrLeu---------LeuThr++ + 234601 : CTCGAGTATTATTTA---------CTCACGgt.........................a : 234811 302 : AlaLeuAsnLysAlaLysLeuIleSerAspPheIleValTyrValSerLeuAlaPhe : 319 ! ! :::||| |||||| !||| !! !!|||||||||||||||:!!.!!||| +GluLysSerLysGluLysLeuAlaSerTyrValIleValTyrValSerMetThrPhe 234812 : gGAAAAgtcgaaggaaaaattagCTTCATACGTCATCGTGTACGTGTCCATGACATTt : 234867 320 : AsnSerPheIlePheCysTyrIleGlyGluThrLeuThrGluGln >>>> Target : 335 ||| ||||||||||||||||||||||||||||||||||||||| 7 AsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGln++ 234868 : aatatattcatattttgttACATCGGAGAGACGCTTACAGAGCAGgt........... : 234917 336 : Intron 3 >>>> CysLysArgValGlyGluIleAlaTyrMetThrAsnTrpTyr : 348 4 bp |||! !:!|||||||||! !!.!|||||||||.!.|||||| ++CysThrLysValGlyGluLysValTyrMetThrGluTrpTyr 234918 : ..............agTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTAC : 235028 349 : LysLeuHisHisLysThrAlaLeuAsnLeuValLeuIleIleAlaGlnSerAsnAsnV : 368 ::!|||! !|||||||||||||||..!||||||:!!||||||:!!::!|||!:!! | ArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetV 235029 : CGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGG : 235088 369 : alIleLysLeuThrAlaGlyLysLeuPheGlnLeuSerMetThrThrPheGlyAspIl : 387 ||||||||:!!||||||||||||!!!.!.|||:!!|||:!:.!!||||||||||||:! alIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVa 235089 : TGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGT : 235145 388 : e : 387 : l 235146 : G : 235147 vulgar: CbirOr25 12 387 . KQ414889.1 232450 235147 + 849 M 47 141 G 0 3 M 204 612 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 31 93 G 3 0 M 2 6 5 0 2 I 0 185 3 0 2 M 34 102 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232451 235147 849 + . gene_id 1 ; sequence CbirOr25 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232451 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232451 233208 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234623 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232451 235147 849 + . alignment_id 1 ; Query CbirOr25 ; Align 232451 13 141 ; Align 232595 60 612 ; Align 234525 265 93 ; Align 234618 299 6 ; Align 234813 301 102 ; Align 234989 335 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 668 Query range: 10 -> 387 Target range: 256637 -> 258624 11 : LysLeuAspAsnAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyA : 30 ||| ! !!!:!|||||||||||||||||||||||||||||||||||||||||||||| LysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyA 256638 : AAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCG : 256695 31 : laTrpProCysIleValSerArgThrThrTrpThrIlePheLeuProLeuGlnIle<- : 49 |||||||| ! !|||! !|||||| ! ! !:!! !!:!! :!: laTrpProProSerSerSerThrThrThrLeuGluArgAsnValSerIleValLeuAs 256696 : CATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAA : 256752 50 : >ValIleSerTrpIleIleValAlaIleIleThrValProCysLeuLeuHisValLeu : 67 :!!:!!!!!!:: ! !:!! !.!!! ! !:!!||||||||||||||||||!!! nIleValCysTyrGlySerIleLeuPheThrLeuIleProCysLeuLeuHisValPhe 256753 : CATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTT : 256809 68 : PheGluValLysAspIleGlnThrArgLeuHisValIleGlyProLeuLeuHisArgL : 87 .!!!!:! ! ! ..!.!! ! :::::: ...||||||:!! !||| !!: LeuAspAspAspSerPheTyrMetLysValLysAsnPheGlyProMetSerHisTrpI 256810 : CTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGA : 256869 88 : euIleGlyTrpValAsnTyrTrpThrLeuLeuAsnCysSerAspAspIleArgAsnCy : 106 !!|||.!!!! !.!|||||| ! !|||||| .!! ! ||||||||| !!|| leIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCy 256870 : TCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTG : 256926 107 : sIleLeuHisMetGluThrAspTrpLysThrMetArgArgThrGluAspArgGluVal : 125 |:!! !|||!!:||||||||||||!:!! !:!!|||||| !:!!|||!:!:!!||| sValGluHisIleGluThrAspTrpArgMetValArgArgGluLysAspGlnGlnVal 256927 : CGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTG : 256983 126 : MetLeuGlnTyrAlaLysPheGlyArgPheLeuAlaIleValCysGlyLeuIleMetH : 145 |||:!!:!! !!|||!:!|||||||||!:!:!!|||! ! !!|||!.! !||||||! MetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetG 256984 : ATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGC : 257043 146 : isGlyGlyThrLeuLeuPheSerIleValLysSerIleLysThrIleThrValThrIl : 164 !..!!|||...... ||| ::: !..!:!!:!:!!.||| ! !:!! !:! lnSerGlyValPheCysPhePheValSerSerAlaLeuAsnThrGluIleIleHisVa 257044 : AAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGT : 257100 165 : eGlyAsnGluThrPheLeuThrHisProMetThrCysProSerTyrSerLysIleIle : 183 :|||||||||||| :!!..!!.. !:!: !! ! !! !|||!.!|||:!::!: lGlyAsnGluThrThrIleValArgValLeuProValThrValTyrLysLysLeuLeu 257101 : GGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTG : 257157 184 : AspThrArgLeuSerProValAsnGluIleAlaIleValMetGlnPheThrSerThrL : 203 :!!..! !! !||||||..!|||||||||!.!:!! !!|||||| ! !|||:!!: AsnValAspGlnSerProThrAsnGluIleValValPheMetGlnThrTrpSerSerI 257158 : AACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGA : 257217 204 : euIleValSerSerAlaThrValGlyAlaCysSerLeuThrAlaValPheAlaMetHi : 222 !!|||!.!!!!!!!::!||||||.!! !! !||||||.!!||||||||||||! || leIleAlaThrThrSerThrValSerIlePheSerLeuAlaAlaValPheAlaThrHi 257218 : TTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCA : 257274 223 : sAlaCysGlyGlnLeuAsnLeuLeuTyrSerGlnLeuAsnLysLeuVal<->GluAsp : 240 ||||! !|||||||||!.!:!!||| ||| !:!!!..:!!!!!||| |||... sAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGluPheValAsnGluSer 257275 : TGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCG : 257331 241 : GlnGluLysGluAsnTyrIleAlaGluArgArgLeuAlaSerIleValSerHisHisL : 260 ::!.!.:::|||... ... !:!!:!:!!!.! !||||||..!||||||| ArgAsnArgGluLysThrPheProPheLysGlnIleGlyValIleValGluHisHisL 257332 : AGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATT : 257391 261 : euArgValLeuSerPheIleSerArgValGluSerIleIleHisLysIleAlaLeuVa : 279 |||||||||||!!!! !! ! !!:!! |||:!!:!: !!..!!! ! !|| euArgValLeuArg***AspPheCysIleIleSerValValTrpAsnPheGluArgVa 257392 : TAAGAGTGCTGAGGTAAGATTTTTGCATTATTTCCGTTGTGTGGAATTTCGAAAGGGT : 257448 280 : lGluLeuValGlySerThr{I} >>>> Target Intron 1 >>>> {le}Ala : 287 |...:!!:!! !! !.!!{ } 763 bp { !}::: lSerValIleIlePheAla{T}++ +-{yr}Ser 257449 : TTCTGTGATTATTTTTGCG{T}gt.........................ac{AC}AGc : 258235 288 : MetCysLeuValGlyTyrTyrIleIleLeuAspLeuAsnAlaLeuAsnLysAlaLysL : 307 :::::: |||||| ... :::! !::!.!!! ::: ...| TyrSerValIlePheTyrTyr---PheGlnGluTrpSerThrGlnAspIleGlnAsnL 258236 : tattctgttattttttattat---tttcaggaATGGTCTACGCaagatattcaaaatt : 258292 308 : euIleSerAspPheIleValTyrValSerLeuAlaPheAsnSerPheIlePheCysTy : 326 || ||| !|||!!::!! !:!!||||||:::|||||| |||:::...||||| euSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValIleCysTy 258293 : tgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaatatgttA : 258349 327 : rIleGlyGluThrLeuThrGluGln >>>> Target Intron 2 >>>> CysL : 336 ||||||||||! !|||||||||||| 90 bp |||| rIleGlyGluIleLeuThrGluGln++ ++CysL 258350 : CATAGGTGAAATATTAACAGAACAGgt.........................agTGCA : 258469 337 : ysArgValGlyGluIleAlaTyrMetThrAsnTrpTyrLysLeuHisHisLysThrAl : 355 ||!:!||||||!!::!:!.!|||||||||:!!|||||| ! |||! ! !!|||! ! ysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIl 258470 : AGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAAT : 258526 356 : aLeuAsnLeuValLeuIleIleAlaGlnSerAsnAsnValIleLysLeuThrAlaGly : 374 !|||:!!|||:!!|||:!!||||||!:!|||!:! |||:!!:!!:!!||||||||| eLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleThrAlaGly 258527 : ACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGgga : 258583 375 : LysLeuPheGlnLeuSerMetThrThrPheGlyAspIle : 387 |||...|||...::!|||!!: !||||||.!!|||:!: LysPhePheHisMetSerIleTyrThrPheSerAspVal 258584 : aaattctttcacatGTCCATTTACACATTCAGCGATGTG : 258624 vulgar: CbirOr25 10 387 . KQ414889.1 256637 258624 + 668 M 38 114 G 0 3 M 190 570 G 0 3 M 47 141 S 0 1 5 0 2 I 0 759 3 0 2 S 1 2 M 8 24 G 1 0 M 39 117 5 0 2 I 0 86 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256638 258624 668 + . gene_id 2 ; sequence CbirOr25 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256638 257469 . + . KQ414889.1 exonerate:protein2genome:local exon 256638 257469 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257470 257471 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257470 258232 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258231 258232 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 258233 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258233 258375 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256638 258624 668 + . alignment_id 2 ; Query CbirOr25 ; Align 256638 11 114 ; Align 256755 49 570 ; Align 257328 239 141 ; Align 258235 287 24 ; Align 258259 296 117 ; Align 258466 335 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 658 Query range: 14 -> 387 Target range: 217171 -> 219671 15 : AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProCysI : 34 ::: |||:!!|||! !|||||||||!!.|||||||||!!:||| !|||||| ! AsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnS 217172 : aatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACT : 217229 35 : leValSerArgThr<->ThrTrpThrIlePheLeuProLeuGlnIleValIleSerTr : 52 ! !!!!! !||| :!! ! ! !|||.!!! ! !||| !! !!.!:!!!!!!: erArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTy 217230 : CACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTA : 217286 53 : pIleIleValAlaIleIleThrValProCysLeuLeuHisValLeuPheGluValLys : 71 : !:!::!!::!.!!:!! !|||||||||! !:!!:!!|||!!!.!!||||||:!! rGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeuGluValGlu 217287 : CGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAA : 217343 72 : AspIleGlnThrArgLeuHisValIleGlyProLeuLeuHisArgLeuIleGlyTrpV : 91 |||:!! ! !!:!||| ! :!!.!!|||||||||:!! ! !!:!!!!:!.!!::| AspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValMetAlaPheV 217344 : GATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCG : 217403 92 : alAsnTyrTrpThrLeuLeuAsnCysSerAspAspIleArgAsnCysIleLeuHisMe : 110 ||!!.|||!:::!!|||:!! ! !!.!! |||||||||.!.|||:!: !...!! alLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCysValArgArgIl 217404 : TCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAAT : 217460 111 : tGluThrAspTrpLysThrMetArgArgThrGluAspArgGluValMetLeuGlnTyr : 129 :||| !||||||!:!!.!:!:||| !! !:!!|||||||||!.!|||:!! ! !! eGluArgAspTrpArgAsnValArgCysGluLysAspArgGluAlaMetIleValAsn 217461 : CGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAAC : 217517 130 : AlaLysPheGlyArgPheLeuAlaIleValCysGlyLeuIleMetHisGlyGlyThrL : 149 |||!!.||||||||| |||!.!:!!:!!||| !!!!.!!|||:!!.!!||| : AlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheV 217518 : GCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcg : 217577 150 : euLeuPheSerIleValLysSerIleLysThrIleThrValThrIleGlyAsnGluTh : 168 ::...::: |||!.!! ! !!|||!....! ! !:!! ! ! !|||! !!. alPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGluAsnGlyAs 217578 : ttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAA : 217634 169 : rPheLeuThrHisProMetThrCysProSerTyrSerLysIleIleAspThrArgLeu : 187 !.!! ! ! !|||:!!..!! !|||! ! !.! ! |||||||||||||||! ! nLeuThrPheIleProLeuValPheProPheThrLysTyrIleIleAspThrArgTyr 217635 : CCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTAC : 217691 188 : SerProValAsnGluIleAlaIleValMetGlnPheThrSerThrLeuIleValSerS : 207 !!!|||..!|||||||||!.!.!! !!:!:|||!!.! !:!! ! !:!::!! !. ThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisG 217692 : ACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACG : 217751 208 : erAlaThrValGlyAlaCysSerLeuThrAlaValPheAlaMetHisAlaCysGlyGl : 226 !! !||| !!.!||||||||||||.!!|||!.!||||||:!:|||||||||||||| lyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGl 217752 : GAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCA : 217808 227 : nLeuAsnLeuLeuTyrSerGlnLeuAsnLysLeuValGluAspGlnGluLysGluAsn : 245 |:!!.!.:!!||| !:! !|||.!. ! |||:!!!!:! !::!! ! ! !!:! nIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgAlaAspMetSer 217809 : GATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGAGCGGATATGAGC : 217865 246 : TyrIleAlaGluArgArgLeuAlaSerIleValSerHisHisLeuArgValLeu{Se} : 264 !!! !!.!!!: !!|||:!!|||||||||||||||!!.|||:!!|||:!!|||{!.} AspThrValAspGlyArgIleAlaSerIleValSerGlnHisValArgIleLeu{Ly} 217866 : GATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTA{AA} : 217922 265 : >>>> Target Intron 1 >>>> {r}PheIleSerArgValGluSerIleIl : 273 1229 bp {!}|||::::!!! !..!|||!!!! !:! ++ ++{s}PheLeuThrLeuThrGluArgThrLe 217923 : gt.........................ag{a}tttttgaCGCTCACAGAGAGAACCCT : 219178 274 : eHisLysIleAlaLeuValGluLeuValGlySerThrIleAlaMetCysLeuValGly : 292 !!!.:!!|||:!!!!!!.!|||!!!:!!|||!!!|||!!:! !!!:|||||||||||| uGlnGlnIleSerPheAlaGluPheLeuGlyCysThrMetAspIleCysLeuValGly 219179 : CCAGCAAATCTCTTTCGCTGAATTTCTAGGATGCACCATGGACATATGTCTCGTTGGA : 219235 293 : TyrTyrIleIleLeu >>>> Target Intron 2 >>>> AspLeuAsnAlaLe : 302 ||||||||||||:!! 76 bp !!:! !!!.:!! TyrTyrIleIleVal++ ++GluTrpLysSerAs 219236 : TATTACATTATCGTGgt.........................agGAATGGAAATCGAA : 219341 303 : uAsnLysAlaLysLeuIleSerAspPheIleValTyrValSerLeuAlaPheAsnSer : 321 !:!! !.!!!.. !:!:!!! !!.!!|||:!! !:!!||||||...|||||| nAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIle 219342 : TGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCCTcactttcaacatt : 219398 322 : PheIlePheCysTyrIleGlyGluThrLeuThrGluGln >>>> Target Intro : 335 ||||||||||||||||||||||||! !:!!.!!|||||| 73 bp PheIlePheCysTyrIleGlyGluIleValAlaGluGln++ 219399 : ttcatattttgctaCATAGGAGAGATCGTTGCTGAACAggt................. : 219442 336 : n 3 >>>> CysLysArgValGlyGluIleAlaTyrMetThrAsnTrpTyrLysLeu : 350 |||:::::::::||||||::::!!||||||! !.!.||||||::!||| ++CysArgLysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeu 219443 : ........agTGtaggaaaattggagaaatgtCGTACATGATCGAATGGTACCGATTG : 219558 351 : HisHisLysThrAlaLeuAsnLeuValLeuIleIleAlaGlnSerAsnAsnValIleL : 370 |||! ! !||| !||||||! !||||||..!||||||::! !|||| ThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaMetSerAsnSerSerIleL 219559 : ACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAA : 219618 371 : ysLeuThrAlaGlyLysLeuPheGlnLeuSerMetThrThrPheGlyAspIle : 387 ||||||||||||||!!.:!! !!:!!||||||!!:!:!|||||| !|||:!: ysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPheThrAspVal 219619 : AATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCACTTTTACCGACGTG : 219671 vulgar: CbirOr25 14 387 . KQ414889.1 217171 219671 + 658 M 24 72 G 0 3 M 225 675 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 37 111 5 0 2 I 0 69 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217172 219671 658 + . gene_id 3 ; sequence CbirOr25 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217172 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217172 217923 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217172 219671 658 + . alignment_id 3 ; Query CbirOr25 ; Align 217172 15 72 ; Align 217247 39 675 ; Align 219154 265 99 ; Align 219329 298 111 ; Align 219513 335 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 624 Query range: 13 -> 297 Target range: 259766 -> 260881 14 : AsnAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProC : 33 !:!|||||||||||||||!!!|||||||||||||||||||||||||||||||||||| SerAspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProP 259767 : AGTGACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCAC : 259824 34 : ysIleValSerArgThrThrTrp<->ThrIlePheLeuProLeuGlnIleValIleSe : 51 ! ! !|||! !|||! ! ! !|||.!!! ! !:!!! !||| !!|||!! roSerSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCy 259825 : CTTCATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTG : 259881 52 : rTrpIleIleValAlaIleIleThrValProCysLeuLeuHisValLeuPheGluVal : 70 !!::! !! !:!! !:!!! ! !:!!||||||:!!||||||:!!|||.!!||| ! sTyrSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLys 259882 : CTACAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAG : 259938 71 : LysAspIleGlnThrArgLeuHisValIleGlyProLeuLeuHisArgLeuIleGlyT : 90 :!!..!:!: ! ! !!:! ! ! |||:!!||||||||| !||| !!!!!:!!|||! GluSerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyC 259939 : GAGAGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCT : 259998 91 : rpValAsnTyrTrpThrLeuLeuAsnCysSerAspAspIleArgAsnCysIleLeuHi : 109 ! :!!|||||| ||||||||| ! .!! ||||||! !!:!|||:!: !|| ysIleAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHi 259999 : GTATTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACA : 260055 110 : sMetGluThrAspTrpLysThrMetArgArgThrGluAspArgGluValMetLeuGln : 128 |:!!|||!.!||||||!:!! !!!:! !||| !:!!|||!:!.!.|||||||||::! sValGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArg 260056 : CGTGGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGA : 260112 129 : TyrAlaLysPheGlyArgPheLeuAlaIleValCysGlyLeuIleMetHisGlyGlyT : 148 ||||||||||||||||||!:!:!!||| ! !|||!.! !.!!:!!!!.||||||. TyrAlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyV 260113 : TACGCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAG : 260172 149 : hrLeuLeuPheSerIleValLysSerIleLysThrIleThrValThrIleGlyAsnGl : 167 .!|||! !|||!!!:!:|||! ! !:!:!..||| ..!:!! !:!:|||||||| alLeuCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGl 260173 : TTCTGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGA : 260229 168 : uThrPheLeuThrHisProMetThrCysProSerTyrSerLysIleIleAspThrArg : 186 |||| :!!..!|||! !:!! !!||| !! !|||!.!:!!:!:|||:!!..!!.! uThrArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsn 260230 : GACGAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAAC : 260286 187 : LeuSerProValAsnGluIleAlaIleValMetGlnPheThrSerThrLeuIleValS : 206 !||||||:!!|||||||||!.!:!!|||:!!||||||..!||| !!!!||||||! AspSerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValA 260287 : GACAGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGA : 260346 207 : erSerAlaThrValGlyAlaCysSerLeuThrAlaValPheAlaMetHisAlaCysGl : 225 :!|||::!||||||||| !! !||||||.!!||||||.!..!! ||||||||||| snSerSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGl 260347 : ATTCGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGG : 260403 226 : yGlnLeuAsnLeuLeuTyrSerGlnLeuAsnLysLeuVal<->GluAspGlnGluLys : 243 ||||||||||:!!||| ..! !:!!!..:!!!!!||| |||...::!.!.!:! yGlnLeuAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArg 260404 : CCAGTTGAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGG : 260460 244 : GluAsnTyrIleAlaGluArgArgLeuAlaSerIleValSerHisHisLeuArgValL : 263 :!!!!. ! ! !! !:!..!:!!!.! !||||||..!||||||||||||!.!| LysLysLysAlaProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaL 260461 : AAGAAAAAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCAC : 260520 264 : eu{Se} >>>> Target Intron 1 >>>> {r}PheIleSerArgValGluSe : 271 ||{!!} 257 bp {!}||||||||||||:!!|||.. eu{Th}++ ++{r}PheIleSerArgIleGluAs 260521 : TC{AC}gt.........................ag{C}TTCATATCGCGTATCGAGGA : 260801 272 : rIleIleHisLysIleAlaLeuValGluLeuValGlySerThrIleAlaMetCysLeu : 290 !:!:!!::!!::!|||..!!!!:!!|||||| !! !!!!!|||:!:! !!!:|||||| pValMetAsnArgIleCysPheLeuGluLeuPheArgCysThrLeuAspIleCysLeu 260802 : TGTGATGAACCGGATATGCTTCCTGGAGTTGTTCAGGTGCACTCTGGATATATGTCTA : 260858 291 : ValGlyTyrTyrIleIleLeu : 297 :!!||||||||||||:!!:!! LeuGlyTyrTyrIleLeuMet 260859 : CTTGGCTACTATATTCTTATG : 260881 vulgar: CbirOr25 13 297 . KQ414889.1 259766 260881 + 624 M 27 81 G 0 3 M 198 594 G 0 3 M 25 75 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259767 260881 624 + . gene_id 4 ; sequence CbirOr25 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259767 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259767 260524 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259767 260881 624 + . alignment_id 4 ; Query CbirOr25 ; Align 259767 14 81 ; Align 259851 41 594 ; Align 260448 239 75 ; Align 260783 265 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 619 Query range: 13 -> 296 Target range: 266631 -> 267555 14 : AsnAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProC : 33 !:!|||||||||||||||||||||||||||||||||||||||||||||||||||||| SerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProP 266632 : AGCGATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGC : 266689 34 : ysIle<->ValSerArgThrThrTrpThrIlePheLeuProLeuGlnIleValIleSe : 51 :!: :!!!!! !! ! ! !||| !!! ! ! ! !|||||||||!! roLeuSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCy 266690 : CGTTGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTG : 266746 52 : rTrpIleIleValAlaIleIleThrValProCysLeuLeuHisValLeuPheGluVal : 70 !!:: ! !:!! !.!!! !..!:!!|||||||||!!!|||:!!:!!.!.|||! ! sTyrCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAsp 266747 : CTACTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGAC : 266803 71 : LysAspIleGlnThrArgLeuHisValIleGlyProLeuLeuHisArgLeuIleGlyT : 90 :!!..!|||!::|||!:!:!! ! |||.!!||||||||| !||| !!!!!:!!||| GluSerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyG 266804 : GAGAGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAG : 266863 91 : rpValAsnTyrTrpThrLeuLeuAsnCysSerAspAspIleArgAsnCysIleLeuHi : 109 ! :!!|||||| ||||||||| !!||| ! !!:||||||..!|||:!! !|| lyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHi 266864 : GAATTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCA : 266920 110 : sMetGluThrAspTrpLysThrMetArgArgThrGluAspArgGluValMetLeuGln : 128 ||||:!!|||||||||!:!! !:!!! !||| !!||||||!:!:!!|||||||||:!! sMetGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLys 266921 : CATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAG : 266977 129 : TyrAlaLysPheGlyArgPheLeuAlaIleValCysGlyLeuIleMetHisGlyGlyT : 148 !!|||!:!.!!||||||!:!:!!|||||| !!|||!.! !.!!|||!!. !!|||. AsnAlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyV 266978 : AACGCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTG : 267037 149 : hrLeuLeuPheSerIleValLysSerIleLysThrIleThrValThrIleGlyAsnGl : 167 .!||| !!:!!!!:!::!!! !:!!.!!! ! ! |||||| !:!!|||||||| alLeuGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGl 267038 : TTCTCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGA : 267094 168 : uThrPheLeuThrHisProMetThrCysProSerTyrSerLysIleIleAspThrArg : 186 |||| :!!..!|||! !:!! !!||| !! !|||!.!|||!!:|||! ..! ! uThrArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAsp 267095 : GACTAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGAT : 267151 187 : LeuSerProValAsnGluIleAlaIleValMetGlnPheThrSerThrLeuIleValS : 206 !||||||..!|||||||||!.!:!!||| ||||||..!||| !!!!||||||! ThrSerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValA 267152 : ACCAGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGA : 267211 207 : erSerAlaThrValGlyAlaCysSerLeuThrAlaValPheAlaMetHisAlaCysGl : 225 :!|||::!..!|||||||||! !||||||.!!|||||||||||| ||||||||||| snSerSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGl 267212 : ATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGG : 267268 226 : yGlnLeuAsnLeuLeuTyrSerGlnLeuAsnLysLeuVal<->GluAspGlnGluLys : 243 |||||||!:!:!!||| ! ! !:!!!!.:!!!!!||| ..!..!::!!!:!.. yGlnLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSer 267269 : ACAGCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGC : 267325 244 : GluAsnTyrIleAlaGluArgArgLeuAlaSerIleValSerHisHisLeuArgValL : 263 .!.!!. !!:!!..! !!:!:!!!.! !:!!|||..!|||||||||||||||| AsnLysAsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValL 267326 : AATAAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTT : 267385 264 : eu{Se} >>>> Target Intron 1 >>>> {r}PheIleSerArgValGluSe : 271 ||{||} 69 bp {|}||||||:!!|||:!!||||| eu{Se}++ ++{r}PheIleAlaArgIleGluSe 267386 : TG{AG}gt.........................ag{C}TTCATAGCACGTATCGAAAG : 267478 272 : rIleIleHisLysIleAlaLeuValGluLeuValGlySerThrIleAlaMetCysLeu : 290 |:!!!!: !:!!|||..!!!!:!!|||||| !! !!!!|||!!:! !!!:|||:!! rValMetSerGluIleCysPheMetGluLeuPheLysCysThrMetAspIleCysVal 267479 : TGTAATGAGCGAAATTTGCTTCATGGAGTTGTTCAAGTGTACTATGGATATATGCGTG : 267535 291 : ValGlyTyrTyrIleIle : 296 :!!.!!|||||||||:!! LeuSerTyrTyrIleLeu 267536 : CTTAGCTATTATATCCTT : 267555 vulgar: CbirOr25 13 296 . KQ414889.1 266631 267555 + 619 M 21 63 G 0 3 M 204 612 G 0 3 M 25 75 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266632 267555 619 + . gene_id 5 ; sequence CbirOr25 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 266632 267389 . + . KQ414889.1 exonerate:protein2genome:local exon 266632 267389 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 267390 267391 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 267390 267458 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 267457 267458 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 267459 267555 . + . KQ414889.1 exonerate:protein2genome:local exon 267459 267555 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266632 267555 619 + . alignment_id 5 ; Query CbirOr25 ; Align 266632 14 63 ; Align 266698 35 612 ; Align 267313 239 75 ; Align 267460 265 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 552 Query range: 13 -> 296 Target range: 274377 -> 275306 14 : AsnAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProC : 33 !:!||||||||||||||||||||||||||||||||||||||||||||||||||||||! SerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProL 274378 : AGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGT : 274435 34 : ysIleValSerArgThrThrTrp<->ThrIlePheLeuProLeuGlnIleValIleSe : 51 ! ! !!! !|||! !!:: !|||.!!! !! !||| ||| ::: euAlaSerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCy 274436 : TAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttg : 274492 52 : rTrpIleIleValAlaIleIleThrValProCysLeuLeuHisValLeuPheGluVal : 70 ::: !.!!:!! ! !! !..!:!!||| !!:!!!!!|||:!!:!!.!.! !! ! sTyrCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAsp 274493 : ctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGAT : 274549 71 : LysAspIleGlnThrArgLeuHisValIleGlyProLeuLeuHisArgLeuIleGlyT : 90 :!!..!:!!!!. !!:!||| ! :!!:!!||||||||| !||| !!!!!|||||| GluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyG 274550 : GAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAG : 274609 91 : rpValAsnTyrTrpThrLeuLeuAsnCysSerAspAspIleArgAsnCysIleLeuHi : 109 ! :!!|||||| ||||||||| !!||| ! !!:||||||..!|||:!: !|| lyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHi 274610 : GAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCA : 274666 110 : sMetGluThrAspTrpLysThrMetArgArgThrGluAspArgGluValMetLeuGln : 128 ||||:!!|||||||||!:!! !:!!! !||| !!||||||!:!:!!|||||||||:!! sMetGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLys 274667 : CATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAG : 274723 129 : TyrAlaLysPheGlyArgPheLeuAlaIleValCysGlyLeuIleMetHisGlyGlyT : 148 !!||||||.!!||||||!:!:!!|||||| !!|||!.! !.!!|||!!. !!|||. AsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyV 274724 : AACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTG : 274783 149 : hrLeuLeuPheSerIleValLysSerIleLysThrIleThrValThrIleGlyAsnGl : 167 .!|||! !!:!!!!:!::!!! !:!!.!!! ! ! |||||| !:!!|||||||| alLeuCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGl 274784 : TTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGA : 274840 168 : uThrPheLeuThrHisProMetThrCysProSerTyrSerLysIleIleAspThrArg : 186 |||| !..!||| !:!! !!||| !:!!|||!.!||||||:!!! ..! ! uThrArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAsp 274841 : GACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGAC : 274897 187 : LeuSerProValAsnGluIleAlaIleValMetGlnPheThrSerThrLeuIleValS : 206 !||||||..!|||||||||!.!:!!!.! !||||||..!||| !!!!||||||! ThrSerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValA 274898 : ACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGA : 274957 207 : erSerAlaThrValGlyAlaCysSerLeuThrAlaValPheAlaMetHisAlaCysGl : 225 :!|||::!.!!|||||||||! !||||||.!!|||||||||||| ||||||! !|| snSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGl 274958 : ATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGG : 275014 226 : yGlnLeuAsnLeuLeuTyrSerGlnLeuAsnLysLeuValGluAspGlnGluLysGlu : 244 |||||||!:!:!!||| ! ! !:!!!.!:!!!!!|||.!. !!.....! ! ::: yGlnLeuSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGln 275015 : CCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcag : 275071 245 : AsnTyrIleAlaGluArgArgLeuAlaSerIleValSerHisHisLeu >>>> Tar : 261 ||| ... ! ! !.!!:!:||| !.!.|||! ! AsnLysAsnValTyrPheSerGluIleGlyValValValGluHisHis-+ 275072 : aataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATct........ : 275124 262 : get Intron 1 >>>> ArgValLeuSerPheIleSerArgValGluSerIleIle : 273 77 bp ! !! !! !|||||||||:!!|||:!!|||..!:!:!!: +-IleAspCysSerPheIleAlaArgIleGluAspValMet 275125 : .................atATTGATTGTAGTTTCATAGCACGTATCGAGGATGTGATG : 275235 274 : HisLysIleAlaLeuValGluLeuValGlySerThrIleAlaMetCysLeuValGlyT : 293 :!!::!|||..!!!!:!!|||||| !! !!!!|||:!:! !||||||:!!:!!|||| AsnArgIleCysPheMetGluLeuPheLysCysThrLeuAspMetCysMetLeuGlyT 275236 : AATCGAATATGCTTCATGGAATTGTTCAAGTGTACTCTGGATATGTGCATGCTTGGCT : 275295 294 : yrTyrIleIle : 296 ||||||||:!! yrTyrIleLeu 275296 : ATTACATTCTC : 275306 vulgar: CbirOr25 13 296 . KQ414889.1 274377 275306 + 552 M 27 81 G 0 3 M 220 660 5 0 2 I 0 73 3 0 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274378 275306 552 + . gene_id 6 ; sequence CbirOr25 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274378 275121 . + . KQ414889.1 exonerate:protein2genome:local exon 274378 275121 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275122 275123 . + . intron_id 1 ; splice_site "CT" KQ414889.1 exonerate:protein2genome:local intron 275122 275198 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275197 275198 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 275199 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275199 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274378 275306 552 + . alignment_id 6 ; Query CbirOr25 ; Align 274378 14 81 ; Align 274462 41 660 ; Align 275199 261 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 546 Query range: 10 -> 334 Target range: 208197 -> 210774 11 : LysLeuAspAsnAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyA : 30 ||| !||| ..!!:!!:!:!!!::|||||| !||| |||||| !||||||: LysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuLysIleIleGlyS 208198 : AAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGAAGATAATCGGCT : 208255 31 : laTrpProCysIleValSerArgThrThrTrpThrIlePheLeuProLeuGlnIle<- : 49 !!|||||| ! !:!!..!|||:!! !! !! ! !! !! !:!!! :!! erTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHisIleLeuLeuAs 208256 : CCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCATATTCTCTTAAA : 208312 50 : >ValIleSerTrpIleIleValAlaIleIleThrValProCysLeuLeuHisValLeu : 67 |||:!!||| !:!::!!!.!.!!|||..!:!!||| ! !:!! !!.!:!! nValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGlyMetPheAlaIle 208313 : CGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATGTTCGCGATC : 208369 68 : PheGluValLysAspIleGlnThrArgLeuHisValIleGlyProLeuLeuHisArgL : 87 .!!! !|||:!!|||.!! ! !!:!||| ! :!! !.!! !!||| ! ! !: LeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaLeuSerPhePheM 208370 : CTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTCTGAGCTTCTTCA : 208429 88 : euIleGlyTrpValAsnTyrTrpThrLeuLeuAsnCysSerAspAspIleArgAsnCy : 106 !!!!:!.!!::..!!!.||| !! !:!! ! ! !!..!! !|||||||||!!.|| etMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAspIleArgLysCy 208430 : TGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGACATACGGAAGTG : 208486 107 : sIleLeuHisMetGluThrAspTrpLysThrMetArgArgThrGluAspArgGluVal : 125 |:!! !:!!:!:|||.!!||||||!:!!.!:!!..!!.! !|||||||||:!!:!! sValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGluAspArgLysIle 208487 : TGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAGGACAGGAAGATC : 208543 126 : MetLeuGlnTyrAlaLysPheGlyArgPheLeuAlaIleValCysGlyLeuIleMetH : 145 ||||||.!. !!|||!..|||!.!||| ||| !:!::!!|||||| !.!!|||: MetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysGlyAlaPheMetT 208544 : ATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCGGAGCTTTCATGT : 208603 146 : isGlyGlyThrLeuLeuPheSerIleValLysSerIleLysThrIleThrValThrIl : 164 !!||||||...:::...::: |||!.! ! !!:!!! ! !! !|||..! yrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAspLysValValGl 208604 : ACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGACAAGGTCGTCGA : 208660 165 : eGlyAsnGluThrPheLeuThrHisProMetThrCysProSerTyrSerLysIleIle : 183 ! !..!! !.!!!. ! !... !:!!..!! !||| ! !!.! |||:!: uGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValProLysPheIleLeu 208661 : GGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCTAAGTTCATTCTG : 208717 184 : AspThrArgLeuSerProValAsnGluIleAlaIleValMetGlnPheThrSerThrL : 203 |||..!|||! !|||||||||||||||||| ! !..!:!:|||!!. !||| !! AspValArgTyrSerProValAsnGluIlePheTyrThrValGlnLeuLeuSerGlyP 208718 : GACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAATTGTTGTCGGGTT : 208777 204 : euIleValSerSerAlaThrValGlyAlaCysSerLeuThrAlaValPheAlaMetHi : 222 !!:!!!.! !!:! !|||||||||||||||.!!|||.!!|||:!!.!!|||||||| heValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLeuLeuAlaMetHi 208778 : TCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCA : 208834 223 : sAlaCysGlyGlnLeuAsnLeuLeuTyrSerGlnLeuAsnLysLeuValGluAspGln : 241 ||||||||||||||||.!.:!!||| ||| !:!!.!.|||||||||!!:! !:! sAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeuValAspGlyArg 208835 : CGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTGGTCGATGGACGG : 208891 242 : GluLysGluAsnTyrIleAlaGluArgArgLeuAlaSerIleValSerHisHisLeuA : 261 ||| ! |||.!. ! ! ! !!!:!:!|||||||||!:!||||||..!!!.|||:!!| GluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleValGluGlnHisValA 208892 : GAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCGTGGAGCAGCATGTTC : 208951 262 : rgValLeu{Se} >>>> Target Intron 1 >>>> {r}PheIleSerArgVa : 269 |||||:!!{!:} 1536 bp {!}||||||:!!! !.. rgValIle{As}++ ++{n}PheIleAlaLeuTh 208952 : GAGTGATC{AA}gt.........................ag{T}TTTATAGCTCTGAC : 210511 270 : lGluSerIleIleHisLysIleAlaLeuValGluLeuValGlySerThrIleAlaMet : 288 !|||!:!:!!:!:|||:!!|||:!!|||:!!|||:!!||||||!!!|||:!: !||| rGluAsnLeuLeuHisGluIleSerLeuIleGluMetValGlyCysThrLeuAsnMet 210512 : AGAGAACCTCCTGCACGAGATATCATTGATAGAAATGGTGGGGTGCACTCTGAACATG : 210568 289 : CysLeuValGlyTyrTyrIleIleLeu >>>> Target Intron 2 >>>> As : 298 |||!!!:!!|||||||||! !!::!! 66 bp !! CysPheLeuGlyTyrTyrThrMetIle++ ++Gl 210569 : TGTTTCCTTGGCTATTACACGATGATTgt.........................agGA : 210664 299 : pLeuAsnAlaLeuAsnLysAlaLysLeuIleSerAspPheIleValTyrValSerLeu : 317 :! !:!!:!! !:!! !!.. !:!:!!! !!.!.:!!:!! !..!|||:!! uTrpAspSerLysAspProIleSerSerLeuThrTyrIleValLeuLeuThrSerVal 210665 : ATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTACTCCTCACTTCTGTC : 210721 318 : AlaPheAsnSerPheIlePheCysTyrIleGlyGluThrLeuThrGluGln : 334 .!!||||||! !||||||||||||||||||||||||..!|||.!!|||||| ThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAlaGluGln 210722 : ACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGCTGAACAg : 210774 vulgar: CbirOr25 10 334 . KQ414889.1 208197 210774 + 546 M 38 114 G 0 3 M 215 645 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208198 210774 546 + . gene_id 7 ; sequence CbirOr25 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208198 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208198 208961 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208198 210774 546 + . alignment_id 7 ; Query CbirOr25 ; Align 208198 11 114 ; Align 208315 49 645 ; Align 210499 265 99 ; Align 210664 298 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 494 Query range: 13 -> 263 Target range: 262843 -> 263599 14 : AsnAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProC : 33 !:!|||||||||||||||:!!|||||||||.!.|||||||||||||||||||||||| SerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProL 262844 : AGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCAC : 262901 34 : ysIleValSerArgThrThrTrp<->ThrIlePheLeuProLeuGlnIleValIleSe : 51 !!.!|||! !:!!! ! ! !|||.!!! ! !||| !||||||:!!!! euSerAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCy 262902 : TGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTG : 262958 52 : rTrpIleIleValAlaIleIleThrValProCysLeuLeuHisValLeuPheGluVal : 70 !!:: !:!!:!! ! !! !..!:!!|||! !:!!||||||:!!:!!.!.|||!.! sTyrCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAla 262959 : TTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCC : 263015 71 : LysAspIleGlnThrArgLeuHisValIleGlyProLeuLeuHisArgLeuIleGlyT : 90 :!!:!!.!!!!.! !!:!|||!!.|||:!!||||||||| !!!. !!!!!:!!||| GluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyM 263016 : GAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTA : 263075 91 : rpValAsnTyrTrpThrLeuLeuAsnCysSerAspAspIleArgAsnCysIleLeuHi : 109 !:!!|||||| !|||||| ! !||| ! ||||||!:!..!|||:!:! !|| etIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHi 263076 : TGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACA : 263132 110 : sMetGluThrAspTrpLysThrMetArgArgThrGluAspArgGluValMetLeuGln : 128 |:!!:!! !|||||| ! !:!!! !||| !||||||!:!...:!!||||||:!! sValGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLys 263133 : CGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAG : 263189 129 : TyrAlaLysPheGlyArgPheLeuAlaIleValCysGlyLeuIleMetHisGlyGlyT : 148 !!||||||!:!||||||!:!:!!||| ! !|||!.!:!!.!!|||!!. !.!!! AsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerI 263190 : AACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCA : 263249 149 : hrLeuLeuPheSerIleValLysSerIleLysThrIleThrValThrIleGlyAsnGl : 167 !:!!! ! !!!:!!|||! !:!!.!!! ||| ..!:!! ! !|||||||| leMetCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGl 263250 : TCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGA : 263306 168 : uThrPheLeuThrHisProMetThrCysProSerTyrSerLysIleIleAspThrArg : 186 |||| :!! !!.! !:!: !!|||||| !|||!.!:!!|||||| ..! ! uThrArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAsp 263307 : GACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGAC : 263363 187 : LeuSerProValAsnGluIleAlaIleValMetGlnPheThrSerThrLeuIleValS : 206 !!:!|||..!||||||||| !:!!!.!! !|||||| !||| !!!!||||||! ThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValT 263364 : ACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCA : 263423 207 : erSerAlaThrValGlyAlaCysSerLeuThrAlaValPheAlaMetHisAlaCysGl : 225 !!:!!.!!||||||||||||! !.!!:!!||||||||||||||| ||||||||||| hrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGl 263424 : CCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGG : 263480 226 : yGlnLeuAsnLeuLeuTyrSerGlnLeuAsnLysLeuValGluAspGlnGluLysGlu : 244 ||||||||||:!!||| ||| !:!!!..:!!!!!|||.!..!......! ! ||| yGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGlu 263481 : ACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAG : 263537 245 : Asn<->TyrIleAlaGluArgArgLeuAlaSerIleValSerHisHisLeuArgValL : 263 ||| !!:!! ! ! !..!:!!!.! !||||||..!|||||||||||||||| AsnLysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValL 263538 : AATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTC : 263597 264 : eu : 263 || eu 263598 : TG : 263599 vulgar: CbirOr25 13 263 . KQ414889.1 262843 263599 + 494 M 27 81 G 0 3 M 205 615 G 0 3 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262844 263599 494 + . gene_id 8 ; sequence CbirOr25 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262844 263599 . + . KQ414889.1 exonerate:protein2genome:local exon 262844 263599 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262844 263599 494 + . alignment_id 8 ; Query CbirOr25 ; Align 262844 14 81 ; Align 262928 41 615 ; Align 263546 246 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 441 Query range: 10 -> 266 Target range: 221363 -> 222134 11 : LysLeuAspAsnAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyA : 30 ||| !:!! ! ! |||:!!||||||!:!||||||.!!|||||||||||||||! LysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleGlyV 221364 : AAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTG : 221421 31 : laTrpProCysIleValSerArgThrThrTrpThrIlePheLeuProLeuGlnIle<- : 49 .!|||||| ! !!.!!:!! !:!!||| !! !!:!||| !! !! !||| alTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLeuIleAs 221422 : TTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAA : 221478 50 : >ValIleSerTrpIleIleValAlaIleIleThrValProCysLeuLeuHisValLeu : 67 |||:!!!!!!::! !:!::!!.!!.!!:!! !||||||||| !|||:!!|||:!! nValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyrValIle 221479 : CGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATC : 221535 68 : PheGluValLysAspIleGlnThrArgLeuHisValIleGlyProLeuLeuHisArgL : 87 .!!||||||:!!|||:!! ! !.!|||:!! ! :!!:!:||||||||| ! ! !!: LeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysV 221536 : CTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCG : 221595 88 : euIleGlyTrpValAsnTyrTrpThrLeuLeuAsnCysSerAspAspIleArgAsnCy : 106 !!!!:!.!!:::!!!!.||| !|||:!! !! !..!:!!|||||||||.!.|| alMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCy 221596 : TGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTG : 221652 107 : sIleLeuHisMetGluThrAspTrpLysThrMetArgArgThrGluAspArgGluVal : 125 |||| !!.!!!:||| !|||||||||!.!!!:! ! !:!!:!!|||!:!!!::!! sIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLysAspIle 221653 : CATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAGGATATA : 221709 126 : MetLeuGlnTyrAlaLysPheGlyArgPheLeuAlaIleValCysGlyLeuIleMetH : 145 |||:!!:!! !!|||! ||||||||| ||| !!!::!!||| !!!!.!!|||: MetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheMetT 221710 : ATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGT : 221769 146 : isGlyGlyThrLeuLeuPheSerIleValLysSerIleLysThrIleThrValThrIl : 164 !!.!!||| :::...::: |||!.!! ! !!.!!!....! !! !:!! !! yrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIleProAl 221770 : ACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGC : 221826 165 : eGlyAsnGluThrPheLeuThrHisProMetThrCysProSerTyrSerLysIleIle : 183 !:!! ... ||||||..!! !|||! !! !!! |||:!! aGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPheIleVal 221827 : GCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTC : 221883 184 : AspThrArgLeuSerProValAsnGluIleAlaIleValMetGlnPheThrSerThrL : 203 |||||||||! !|||||||||||||||||| !.!! !:!:|||.!!! !:!! ! AspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyA 221884 : GATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTG : 221943 204 : euIleValSerSerAlaThrValGlyAlaCysSerLeuThrAlaValPheAlaMetHi : 222 !:!::!! !||| !||| !!.!||||||||||||..!|||:!!||||||:!!|| laLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaValHi 221944 : CTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCA : 222000 223 : sAlaCysGlyGlnLeuAsnLeuLeuTyrSerGlnLeuAsnLysLeuValGluAspGln : 241 |||||||||||||:!!.!.:!!||| ||| !|||!!. ! |||:!!.!.! !!:! sAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsnGlyArg 222001 : CGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGCCGG : 222057 242 : GluLysGluAsnTyrIleAlaGluArgArgLeuAlaSerIleValSerHisHisLeuA : 261 ! ! ! ! ! !!! !!.!!!:||||||:!!|||!.!||||||!:!!!.|||:!!| AlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnHisValA 222058 : GCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAACACGTTC : 222117 262 : rgValLeuSerPheIle : 266 ||:!!|||..!!:!:!! rgIleLeuGlnTyrVal 222118 : GAATATTGCAGTATGTA : 222134 vulgar: CbirOr25 10 266 . KQ414889.1 221363 222134 + 441 M 38 114 G 0 3 M 218 654 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221364 222134 441 + . gene_id 9 ; sequence CbirOr25 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221364 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221364 222134 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221364 222134 441 + . alignment_id 9 ; Query CbirOr25 ; Align 221364 11 114 ; Align 221481 49 654 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 399 Query range: 12 -> 273 Target range: 236843 -> 237626 13 : AspAsnAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpP : 32 ..!!:!|||||||||||||||! !||||||||| :!!||| !||||||.!!|||| SerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpP 236844 : AGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGC : 236901 33 : roCysIleValSerArgThrThrTrpThrIlePheLeuProLeuGlnIleValIleSe : 51 || .!! !|||!.! ! ! ! !.!|||! !! ! !|||.!. ||||||!! roGlnPheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsn---ValIleCy 236902 : CACAGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAAC---GTGATCTG : 236955 52 : rTrpIleIleValAlaIleIleThrValProCysLeuLeuHisValLeuPheGluVal : 70 !!::! ! !:!! !.!! ! !:!!||||||! !||||||:!!:!!.!.||| ! sTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLys 236956 : CTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAA : 237012 71 : LysAspIleGlnThrArgLeuHisValIleGlyProLeuLeuHisArgLeuIleGlyT : 90 ! !.!! ! |||!:!:!! ! :!!:!!||| !!||| !||| !!:!!.!! !! GlyThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysI 237013 : GGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTA : 237072 91 : rpValAsnTyrTrpThrLeuLeuAsnCysSerAspAspIleArgAsnCysIleLeuHi : 109 :!!!:!||| ! !|||||| ! !! ! !||||||:!!! !.!! !|| leIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHi 237073 : TCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCA : 237129 110 : sMetGluThrAspTrpLysThrMetArgArgThrGluAspArgGluValMetLeuGln : 128 ||||||||||||||||!:!|||! ! ||| ||| :::||||||||||||:!! sMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLys 237130 : TATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAG : 237186 129 : TyrAlaLysPheGlyArgPheLeuAlaIleValCysGlyLeuIleMetHisGlyGlyT : 148 ||||||||||||.!!|||!:! !|||||| !||| !:!!.!!!!:|||||||||! TyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyI 237187 : TACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTA : 237246 149 : hrLeuLeuPheSerIleValLysSerIleLysThrIleThrValThrIleGlyAsnGl : 167 !||| !!:!!!!:!!:!!! !:!! !! |||!!:..!|||..!:!!||||||:! leLeuGlyTyrCysValMetThrAlaSerThrThrMetValValValValGlyAsnLy 237247 : TACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAA : 237303 168 : uThrPheLeuThrHisProMetThrCysProSerTyrSerLysIleIleAspThrArg : 186 !||| :!! !!.! !:!! !!! |||! !|||!.! !:!!:!! ..! ! sThrThrIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAsp 237304 : GACTACGATCTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGAT : 237360 187 : LeuSerProValAsnGluIleAlaIleValMetGlnPheThrSerThrLeuIleValS : 206 !!:! !!:!!|||!!:|||!.!:!!:!! |||||| !||| !!!!|||!.!! ThrAsnThrMetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaA 237361 : ACGAATACTATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGA : 237420 207 : erSerAlaThrValGlyAlaCysSerLeuThrAlaValPheAlaMetHisAlaCysGl : 225 :!!:!::!.!!:!!.!!!.! |||||||||::!!.!.!..!! ||||||! !|| snAsnSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGl 237421 : ACAACAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGG : 237477 226 : yGlnLeuAsnLeuLeuTyrSerGlnLeuAsnLysLeuValGluAspGlnGluLysGlu : 244 |||||||!:!:!!:!! ! !..!:!!.!. ! !!!|||...!!: !..!:::..! yGlnLeuSerValValMetLeuSerIleGluAspPheValSerGluAlaArgArgArg 237478 : CCAGTTGAGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGA : 237534 245 : AsnTyrIleAlaGlu<->ArgArgLeuAlaSerIleValSerHisHisLeuArgValL : 263 ... ! !! !.!. !..!:!! !!!!!||||||..!.!.||||||||||||| GlyLysAspAspHisPheAspGluIleProThrIleValGluGluHisLeuArgValL 237535 : GGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGT : 237594 264 : euSerPheIleSerArgValGluSerIleIle : 273 ||!.!! :!!!!! !:!!!!:! !|||:!: euLys***ValCysLeuLeuAspLeuIleLeu 237595 : TGAAGTAAGTATGTTTGTTGGATTTGATTTTG : 237626 vulgar: CbirOr25 12 273 . KQ414889.1 236843 237626 + 399 M 35 105 G 1 0 M 201 603 G 0 3 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236844 237626 399 + . gene_id 10 ; sequence CbirOr25 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236844 237626 . + . KQ414889.1 exonerate:protein2genome:local exon 236844 237626 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 236844 237626 399 + . alignment_id 10 ; Query CbirOr25 ; Align 236844 13 105 ; Align 236949 49 603 ; Align 237555 250 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 391 Query range: 10 -> 263 Target range: 303181 -> 304866 11 : LysLeuAspAsnAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyA : 30 ||| !|||! !! !||| ! !:!!! !!:!!:!|||.!!|||||| !!:!!||| LysLysAspIleValTyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyI 303182 : AAGAAAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTA : 303239 31 : laTrpProCysIleValSerArgThrThrTrpThrIlePheLeuProLeuGlnIleVa : 49 !||||||..!:!::!!..!..!|||.!! !.!!.!.! ! !:!! |||! leTrpProAlaValLeuAspGluThrAla---GlyPheLeuProLysIleThrIleGl 303240 : TTTGGCCAGCCGTGTTGGACGAAACCGCA---GGATTCCTACCAAAAATCACCATTGG : 303293 50 : lIleSerTrpIleIleValAlaIleIleThrValProCysLeuLeuHisValLeuPhe : 68 !:!!||| :!::!!:!! !.!!! !..!:!!||||||:!!||||||:!!:!!||| yLeuSerAsnLeuValLeuLeuPheThrValIleProCysIleLeuHisIleIlePhe 303294 : ACTCAGTAATTTGGTTCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTC : 303350 69 : GluValLysAspIleGlnThrArgLeuHisValIleGlyProLeuLeuHisArgLeuI : 88 ||| !||||||! !! !|||||| ! :!!.!!|||! !||| ! ! !!|||| GluGlnLysAspThrIleIleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuI 303351 : GAACAAAAGGATACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGA : 303410 89 : leGlyTrpValAsnTyrTrpThrLeuLeuAsnCysSerAspAspIleArgAsnCysIl : 107 ||..!! !:!!!!.||||||.!!||| !!.. ! !.! |||!:!.!.||||| leSerLeuMetLysTyrTrpAlaLeuAlaThrArgLysProArgIleLysGluCysIl 303411 : TCTCGTTGATGAAGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTAT : 303467 108 : eLeuHisMetGluThrAspTrpLysThr >>>> Target Intron 1 >>>> M : 117 | !.!.:!!:!!!:!||||||||| ! 938 bp : eGluGluValGlnSerAspTrpLysGlu++ ++V 303468 : AGAAGAGGTGCAAAGTGATTGGAAAGAGgt.........................agG : 304435 118 : etArgArgThrGluAspArgGluValMetLeuGlnTyrAlaLysPheGlyArgPheLe : 136 !!..! ! !..!|||||||||:!!||||||:!!|||!.!:!!.!.|||||| !|| alGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLe 304436 : TGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCT : 304492 137 : uAlaIleValCysGlyLeuIleMetHisGlyGlyThrLeuLeuPheSerIleValLys : 155 |.!!|||:!!|||!.!:!!.!!|||:!! !||| ! !:!!!:! !! |||! ! uThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMet 304493 : GACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATG : 304549 156 : SerIleLysThrIleThrValThrIleGlyAsnGluThrPheLeuThrHisProMetT : 175 ..!.!! !||| !||| ! :!:! !.!. ! !.! ! !! ! ! |||:!:. GlnPheAlaThrGlyThrTyr---ValAspGluTyrAsnArgThrIleLysProLeuV 304550 : CAGTTCGCGACCGGAACGTAT---GTGGATGAGTATAATCGTACGATTAAACCGCTCG : 304606 176 : hrCysProSerTyrSerLysIleIleAspThrArgLeuSerProValAsnGluIleAl : 194 .!! !|||!!!|||||| :!!.!!|||..!!:! !||||||:!! !!|||:!:!. alTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuVa 304607 : TCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGT : 304663 195 : aIleValMetGlnPheThrSerThrLeuIleValSerSerAlaThrValGlyAlaCys : 213 ! ! !!:!:!!.! !! !!!! !! !:!!:!!! !||| !|||!.!||||||||| lTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCys 304664 : TTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGC : 304720 214 : SerLeuThrAlaValPheAlaMetHisAlaCysGlyGlnLeuAsnLeuLeuTyrSerG : 233 .!!|||.!!|||:!!||||||! |||||||||||||||:!!:!!:!!:!! |||! GlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerA 304721 : GGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTC : 304780 234 : lnLeuAsnLysLeuValGluAspGlnGluLysGluAsnTyrIleAlaGluArgArgLe : 252 :!|||..! ! ||||||.!...!:!!|||..!...:!! !!!:!:!||||| rgLeuGlyAspLeuValAsnSerLysGluSerSerAsp------LeuAspLysArgLe 304781 : GATTGGGTGATCTTGTCAACAGCAAAGAATCATCTGAT------TTAGATAAACGATT : 304831 253 : uAlaSerIleValSerHisHisLeuArgValLeu : 263 | !..!||||||..!||||||||||||:!!||| uIleGluIleValGluHisHisLeuArgIleLeu 304832 : AATAGAAATTGTTGAGCATCATTTGCGAATTTTA : 304866 vulgar: CbirOr25 10 263 . KQ414889.1 303181 304866 + 391 M 29 87 G 1 0 M 76 228 5 0 2 I 0 934 3 0 2 M 46 138 G 1 0 M 82 246 G 2 0 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303182 304866 391 + . gene_id 11 ; sequence CbirOr25 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303182 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303182 303496 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304866 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304866 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 303182 304866 391 + . alignment_id 11 ; Query CbirOr25 ; Align 303182 11 87 ; Align 303269 41 228 ; Align 304435 117 138 ; Align 304573 164 246 ; Align 304819 248 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 378 Query range: 14 -> 296 Target range: 212869 -> 214558 15 : AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpPro<->C : 33 ::: |||::: !! !|||||||||.!!|||||||||! ||| !|||||| AsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspL 212870 : aatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACA : 212927 34 : ysIleValSerArgThrThrTrpThrIlePheLeuProLeuGlnIleValIleSerTr : 52 ! ! ! ! !!! ! !! !! !.!! !! !||| ! !..!:!!!!!!: ysSerTyrValSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTy 212928 : AGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTA : 212984 53 : pIleIleValAlaIleIleThrValProCysLeuLeuHisValLeuPheGluValLys : 71 : !:!::!!!.! !:!!..!:!!|||||| !|||:!!|||!!!.!!!!:|||::: rGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGlu 212985 : CGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgag : 213041 72 : AspIleGlnThrArgLeuHisValIleGlyProLeuLeuHisArgLeuIleGlyTrpV : 91 :::||| ...:!!.!.:!!.!!||| !!!! ! ! !!:!! !!.! ! AsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuT 213042 : aatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGT : 213101 92 : alAsnTyrTrpThrLeuLeuAsnCysSerAspAspIleArgAsnCysIleLeuHisMe : 110 !!!.||| :!!|||:!! ! !.!!||||||||||||!..|||:!! !||||| rpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMe 213102 : GGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATAT : 213158 111 : tGluThrAspTrpLysThrMetArgArgThrGluAspArgGluValMetLeuGlnTyr : 129 |:!! !|||||||||!.!!!:! !!.! !||||||!:!|||:!!||| ! ! !! tLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsn 213159 : GAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAAC : 213215 130 : AlaLysPheGlyArgPheLeuAlaIleValCysGlyLeuIleMetHisGlyGlyThrL : 149 |||!..||||||!:! :!!!.!! !:!!|||!.!!!!.!!|||:!! !||| ! AlaSerPheGlyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheT 213216 : GCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCA : 213275 150 : euLeuPheSerIleValLysSerIleLysThrIleThrValThrIleGlyAsnGluTh : 168 !!!!!:!! !:!!||| ! !!|||!...!! !! !:!!..! ! !:!! !. hrPheTyrPheLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAs 213276 : CGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAA : 213332 169 : rPheLeuThrHisProMetThrCysProSerTyrSerLysIleIleAspThrArgLeu : 187 ! ! ! !...! !|||..! !||| !! !!! |||:!!|||..!|||! ! nValThrPheArgGlnMetValValProValSerArgPheIleValAspValArgTyr 213333 : CGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATAC : 213389 188 : SerProValAsnGluIleAlaIleValMetGlnPheThrSerThrLeuIleValSerS : 207 |||||||||||||||||| !.!!:!!!!:|||.!!! !:!! !:!!:!::!! !: SerProValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisA 213390 : AGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATG : 213449 208 : erAlaThrValGlyAlaCysSerLeuThrAlaValPheAlaMetHisAlaCysGlyGl : 226 !! !.!!|||! !||||||||||||.!!||||||||||||:!:|||||||||||||| laIleAlaValValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGl 213450 : CTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACA : 213506 227 : nLeuAsnLeuLeuTyrSerGlnLeuAsnLysLeuValGluAspGlnGluLysGluAsn : 245 |:!!..!:!!||| ||| !|||.!. ! |||:!!!!:! !::!||| ! !!:! nMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGlyArgGluAspMetSer 213507 : GATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGC : 213563 246 : TyrIleAlaGluArgArgLeuAlaSerIleValSerHisHisLeu{Ar} >>>> Ta : 261 ! ! !!.!!!: !|||:!!||| !||||||!:!!!.|||:!!{||} LysAsnValAspAspArgIleAlaValIleValAsnGlnHisVal{Ar}+- 213564 : AAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATGTG{CG}ga....... : 213615 262 : rget Intron 1 >>>> {g}ValLeuSerPheIleSerArgValGluSerIleIl : 273 849 bp {|} !!|||..!.!!:!: |||!.! !:! ++{g}PheLeuGluLeuVal---------GluLysAlaLe 213616 : ..................ag{A}TTCTTAGAGCTCGTG---------GAGAAAGCACT : 214487 274 : eHisLysIleAlaLeuValGluLeuValGlySerThrIleAlaMetCysLeuValGly : 292 !!..:!!:!!:!!!!!!.!||||||:!!! !!!!|||:!: !:!:|||||||||||| uArgGlnValSerPheAlaGluLeuLeuValCysThrValAsnLeuCysLeuValGly 214488 : TCGGCAAGTATCTTTCGCTGAATTATTAGTATGCACGGTGAATCTCTGTCTCGTTGGA : 214544 293 : TyrTyrIleIle : 296 |||||||||||| TyrTyrIleIle 214545 : TATTACATAATA : 214558 vulgar: CbirOr25 14 296 . KQ414889.1 212869 214558 + 378 M 18 54 G 0 3 M 228 684 S 0 2 5 0 2 I 0 845 3 0 2 S 1 1 M 5 15 G 3 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212870 214558 378 + . gene_id 12 ; sequence CbirOr25 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212870 213612 . + . KQ414889.1 exonerate:protein2genome:local exon 212870 213612 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 213613 213614 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 213613 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214558 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214558 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 212870 214558 378 + . alignment_id 12 ; Query CbirOr25 ; Align 212870 15 54 ; Align 212927 33 684 ; Align 214463 262 15 ; Align 214478 270 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 376 Query range: 14 -> 267 Target range: 226927 -> 227689 15 : AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProCysI : 34 :!! |||:!!|||||||||||||||.!.|||||||||:!!||| !||||||! AsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerS 226928 : AACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGT : 226985 35 : le<->ValSerArgThrThrTrpThrIlePheLeuProLeuGlnIleValIleSerTr : 52 !||| ! !! ! ! ! ! !|||! ! !|||..! ! !!:!!!!!!: erArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTy 226986 : CGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTA : 227042 53 : pIleIleValAlaIleIleThrValProCysLeuLeuHisValLeuPheGluValLys : 71 : :!::!!::!.!! !||| !! !! !|||:!!|||:!!.!.||||||||| rAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLys 227043 : CGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAA : 227099 72 : AspIleGlnThrArgLeuHisValIleGlyProLeuLeuHisArgLeuIleGlyTrpV : 91 ! ! ! ! !.!! !||| ! :!!|||||||||:!!! ! ! ! !!!:..! : GlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuL 227100 : GGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCC : 227159 92 : alAsnTyrTrpThrLeuLeuAsnCysSerAspAspIleArgAsnCysIleLeuHisMe : 110 !!!!.|||! ! !||| ! ! !..!|||||||||! !.!.|||:!! !!..!! euLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIl 227160 : TCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGAT : 227216 111 : tGluThrAspTrpLysThrMetArgArgThrGluAspArgGluValMetLeuGlnTyr : 129 ::!! !|||||||||!.!!!:||| ! !|||||||||.!.||||||:!! !||| eLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyr 227217 : CAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTAC : 227273 130 : AlaLysPheGlyArgPheLeuAlaIleValCysGlyLeuIleMetHisGlyGlyThrL : 149 ||| ! !:!|||||| ||| !! !:!!||| !!!!.!!:!: !...... : AlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheV 227274 : GCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcg : 227333 150 : euLeuPheSerIleValLysSerIleLysThrIleThrValThrIleGlyAsnGluTh : 168 ::...||| |||||| ! !!|||!!..!! !!:!|||.!!! ! !:!!! !!. alPhePheTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGlyAs 227334 : tatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAA : 227390 169 : rPheLeuThrHisProMetThrCysProSerTyrSerLysIleIleAspThrArgLeu : 187 ! ! ! ! !! !||| !!! !|||! ! !.!! ||| !|||..!|||! ! nHisSerTyrIleGlnMetProPheProPheProLysIleIleAlaAspValArgTyr 227391 : CCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTAC : 227447 188 : SerProValAsnGluIleAlaIleValMetGlnPheThrSerThrLeuIleValSerS : 207 |||||| !!||||||||| !.!! !:!:||||||..!!!! !:!!:!::!! !. SerProPheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuHisG 227448 : AGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACG : 227507 208 : erAlaThrValGlyAlaCysSerLeuThrAlaValPheAlaMetHisAlaCysGlyGl : 226 !!!.!||| !!.!|||||||||:!!.!!|||:!!.!!|||:!:|||||||||||||| lyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGl 227508 : GTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCA : 227564 227 : nLeuAsnLeuLeuTyrSerGlnLeuAsnLysLeuValGluAspGlnGluLysGluAsn : 245 |:!!.!.:!!||| ||| !|||... ! |||:!!!!:! !::!! ! ! !!:! nMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGlyArgAlaAspMetSer 227565 : GATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGCAGAGCGGATATGAGC : 227621 246 : TyrIleAlaGluArgArgLeuAlaSerIleValSerHisHisLeuArgValLeuSerP : 265 ! ! ! !!!: !|||:!!||||||||||||!!!||||||:!!|||:!!|||!.!! LysThrLeuAspAspArgIleAlaSerIleValThrHisHisValArgIleLeuLysC 227622 : AAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACCACGTTCGAATATTGAAGT : 227681 266 : heIleSer : 267 !:!!!!! ysValThr 227682 : GTGTAACG : 227689 vulgar: CbirOr25 14 267 . KQ414889.1 226927 227689 + 376 M 20 60 G 0 3 M 233 699 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226928 227689 376 + . gene_id 13 ; sequence CbirOr25 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226928 227689 . + . KQ414889.1 exonerate:protein2genome:local exon 226928 227689 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226928 227689 376 + . alignment_id 13 ; Query CbirOr25 ; Align 226928 15 60 ; Align 226991 35 699 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 360 Query range: 15 -> 263 Target range: 284523 -> 286288 16 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProCysIleV : 35 ||||||:!!|||:!!|||||||||||||||||||||||||||!.!|||||| !! !: TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 36 : alSerArgThrThrTrp<->ThrIlePheLeuProLeuGlnIleValIleSerTrpIl : 53 !!!!! !||||||! ! ! !||| !! ! !:!!! :!!||||||!! .! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 54 : eIleValAlaIleIleThrValProCys<->LeuLeuHisValLeuPheGluValLys : 71 !:!::!!!.!.!!:!! !||||||||| |||! ! |||||| !:!!..! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 72 : AspIleGlnThrArgLeuHisValIleGlyProLeuLeuHisArgLeuIleGlyTrpV : 91 |||:!!.!.|||!:!:!! ! :!!|||||||||||| ! ! !!:!!!!:!.! !: AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 92 : alAsnTyrTrpThrLeuLeuAsnCysSerAspAspIleArgAsnCysIleLeuHisMe : 110 !!!!.|||!::! !|||:!!::: !!.!!! ! ! ||| !!.!.|||:!: ! !!!! leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 111 : tGluThrAsp{Tr} >>>> Target Intron 1 >>>> {p}LysThrMetArg : 118 :....!!|||{||} 1012 bp {|} :!! !! eArgAlaAsp{Tr}++ +-{p}LeuSerHisSer 284813 : TCGTGCGGAC{TG}gt.........................ac{G}CTTTCGCATAGt : 285848 119 : ArgThrGluAspArgGluValMetLeuGlnTyrAlaLysPheGlyArgPheLeuAlaI : 138 ::: |||:::||||||:::||| !.!. !|||!:!.!!||||||! !||||||| GlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaI 285849 : caagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGA : 285908 139 : leValCysGlyLeuIleMetHisGlyGlyThrLeuLeuPheSerIleValLysSerIl : 157 || !!|||!.! !.!!|||:!!..!||| !!!!!!!!:!!!!! |||! ! !!:! lePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLe 285909 : TCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTT : 285965 158 : eLysThrIleThrValThrIleGlyAsnGluThrPheLeuThrHisProMetThrCys : 176 : |||:!! !..! !||| ! !!!:!.! !..!... !!....!!! ! uCysThrValArgThrGluIle---IleAspAsnGluThrValArgSerGlnAlaPhe 285966 : GTGCACAGTACGCACGGAGATC---ATCGACAACGAGACCGTGAGATCTCAAGCGTTC : 286019 177 : ProSerTyrSerLysIleIleAspThrArgLeuSerProValAsnGluIleAlaIleV : 196 |||! !||| !! :!!:!!||| !!||| !|||||| ! !||||||!.! ! ProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnP 286020 : CCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAAT : 286079 197 : alMetGlnPheThrSerThrLeuIleValSerSerAlaThrValGlyAlaCysSerLe : 215 !!||||||! ! !:!!.!!!!!:!!:!!! !|||!.!|||||||||||||||||||| heMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLe 286080 : TCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTT : 286136 216 : uThrAlaValPheAlaMetHisAlaCysGlyGlnLeuAsnLeuLeuTyrSerGlnLeu : 234 |.!!|||||||||!.!||||||!.!|||||||||!!!!..:!!||| !!!:!!||| uAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeu 286137 : GGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTG : 286193 235 : AsnLysLeuValGluAspGlnGluLysGluAsnTyrIleAla<-><->GluArgArgL : 252 :!!|||||||||!!:! !:!! !..!!!. :!:::! |||!:!|||| AspLysLeuValAspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgL 286194 : GATAAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGAC : 286253 253 : euAlaSerIleValSerHisHisLeuArgValLeu : 263 ||!.!..!|||:!!..!|||||||||!:!:!!||| euGlyAspIleIleGluHisHisLeuLysIleLeu 286254 : TGGGAGATATCATCGAGCATCATCTGAAGATACTG : 286288 vulgar: CbirOr25 15 263 . KQ414889.1 284523 286288 + 360 M 25 75 G 0 3 M 22 66 G 0 3 M 51 153 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 50 150 G 1 0 M 83 249 G 0 6 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 286288 360 + . gene_id 14 ; sequence CbirOr25 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284524 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 284825 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286288 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286288 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284524 286288 360 + . alignment_id 14 ; Query CbirOr25 ; Align 284524 16 75 ; Align 284602 41 66 ; Align 284671 63 153 ; Align 285839 115 150 ; Align 285989 166 249 ; Align 286244 249 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 351 Query range: 15 -> 263 Target range: 278576 -> 279338 16 : TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProCysIleV : 35 ||||||:!!|||:!!|||||||||||||||||||||||||||!.!|||||| !! !: TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 36 : alSerArgThrThrTrp<->ThrIlePheLeuProLeuGlnIleValIleSerTrpIl : 53 !!!!! !||||||! ! ! !||| !! ! !:!!! :!!||||||!! .! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 54 : eIleValAlaIleIleThrValProCys<->LeuLeuHisValLeuPheGluValLys : 71 !:!::!!!.!.!!:!! !||||||||| |||! ! |||||| !:!!..! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 72 : AspIleGlnThrArgLeuHisValIleGlyProLeuLeuHisArgLeuIleGlyTrpV : 91 |||:!!.!.|||!:!:!! ! :!!|||||||||||| ! ! !! !!!:!.! !: AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 92 : alAsnTyrTrpThrLeuLeuAsnCysSerAspAspIleArgAsnCysIleLeuHisMe : 110 !!!!.|||!::! !|||:!!::: !!.!!! ! ! ||| !!!!.|||:!: ! !!!! leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 111 : tGluThrAspTrpLys<-><-><->ThrMetArgArgThrGluAspArgGluValMet : 126 :...|||||||||... :!! |||::: |||:::||||||:::||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 127 : LeuGlnTyrAlaLysPheGlyArgPheLeuAlaIleValCysGlyLeuIleMetHisG : 146 !.!. !|||!:!.!!||||||! !||||||||| !! !!!.! !.!!|||:!!. ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 147 : lyGlyThrLeuLeuPheSerIleValLysSerIleLysThrIleThrValThrIleGl : 165 .!||| !:!!!!!!:!!!! !|||! ! !!:!: .!!:!! !..! !||| erGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIle-- 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATC-- : 279039 166 : yAsnGluThrPheLeuThrHisProMetThrCysProSerTyrSerLysIleIleAsp : 184 ! !!!:!.! !..!... !!....!!! !|||! !||| !! :!!:!!||| -IleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAsp 279040 : -ATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGAT : 279093 185 : ThrArgLeuSerProValAsnGluIleAlaIleValMetGlnPheThrSerThrLeuI : 204 !!||| !|||||| ! !||||||!.! ! !!||||||! ! !:!!.!!!!!: ProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheV 279094 : CCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCG : 279153 205 : leValSerSerAlaThrValGlyAlaCysSerLeuThrAlaValPheAlaMetHisAl : 223 !!:!!! !|||!.!|||||||||||||||||||||! !|||||||||!.!||||||!. alLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisVa 279154 : TTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGT : 279210 224 : aCysGlyGlnLeuAsnLeuLeuTyrSerGlnLeuAsnLysLeuValGluAspGlnGlu : 242 !|||||||||!!!!..:!!||| !!!:!!|||:!!||||||:!!!!:! !:!! lCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLys 279211 : CTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAA : 279267 243 : LysGluAsnTyrIleAla<-><->GluArgArgLeuAlaSerIleValSerHisHisL : 260 !..!!!. !:!:::! |||!:!||||||!.!..!|||:!!..!||||||| GlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisL 279268 : GGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATC : 279327 261 : euArgValLeu : 263 ||!:!:!!||| euLysIleLeu 279328 : TGAAGATACTG : 279338 vulgar: CbirOr25 15 263 . KQ414889.1 278576 279338 + 351 M 25 75 G 0 3 M 22 66 G 0 3 M 53 159 G 0 9 M 49 147 G 1 0 M 83 249 G 0 6 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 279338 351 + . gene_id 15 ; sequence CbirOr25 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278577 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279338 . + . insertions 21 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278577 279338 351 + . alignment_id 15 ; Query CbirOr25 ; Align 278577 16 75 ; Align 278655 41 66 ; Align 278724 63 159 ; Align 278892 116 147 ; Align 279039 166 249 ; Align 279294 249 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 237 Query range: 10 -> 225 Target range: 194156 -> 194795 11 : LysLeuAspAsnAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyA : 30 |||||||||!.!!!:|||:!!:!!!:!:!! !:! !.!!|||! !||||||||| LysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyI 194157 : AAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTA : 194214 31 : laTrpProCysIleValSerArgThrThrTrpThrIlePheLeuProLeuGlnIleVa : 49 !|||||| ! ! !|||! ! ! ! ! !:!! ||| ! !|||! !! leTrpProArgGluAspSerLeuArgAsp---ArgValArgLeuPheAlaGlnThrGl 194215 : TCTGGCCAAGGGAGGATTCTCTTCGCGAC---AGAGTCCGACTGTTCGCTCAAACTGG : 194268 50 : lIleSerTrpIleIleValAlaIleIleThrValProCysLeuLeuHisValLeuPhe : 68 !:!: !!:: !:!::!!..!.!!:!! !|||||| !:!!:!!:!!..!! !||| yValValPheAlaLeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPhe 194269 : CGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTC : 194325 69 : GluValLysAspIleGlnThrArgLeuHisValIleGlyProLeuLeuHisArgLeuI : 88 !!: !:!!|||:!: !! ! !:!! ! ||||||!.! !!! !:!! !!!!|||: AspCysGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuL 194326 : GACTGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGT : 194385 89 : leGlyTrpValAsnTyrTrpThrLeuLeuAsnCysSerAspAspIleArgAsnCysIl : 107 !:!.! :!!!!.!:!||||||:!!:!! !!!! ! !!:|||||| !|||:! euAlaIleIleLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLe 194386 : TGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCT : 194442 108 : eLeuHisMetGluThrAspTrpLysThrMetArgArgThrGluAspArgGluValMet : 126 :|||.!.|||||||||.!.!::!:! !:!!..! !! !|||||||||:!!|||||| uLeuGluMetGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMet 194443 : GCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATG : 194499 127 : LeuGlnTyrAlaLysPheGlyArgPheLeuAlaIleValCysGlyLeuIleMetHisG : 146 !.!.! !||||||.!!|||||||||!!!.!!! !:!!! ! ! !:!! :!!| ThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrG 194500 : ACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACG : 194559 147 : lyGlyThrLeuLeuPheSerIleValLysSerIleLysThrIleThrValThrIleGl : 165 |||||.!!|||! !!:! !|||:!! ! !!:!:! !:!! ! !:!! :!! lyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluArgIle---ValLy 194560 : GTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATT---GTCAA : 194613 166 : yAsnGluThrPheLeuThrHisProMetThrCysProSerTyrSerLysIleIleAsp : 184 !.!.!!:!.! ! ! ! |||:!! !!! ! !||| !!! ! .!!.!!! sGluAspAsnSerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAla 194614 : GGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCG : 194670 185 : ThrArgLeuSerProValAsnGluIleAlaIleValMetGlnPheThrSerThrLeuI : 204 ! !..! !||||||:!! !!||||||.!!.!!||| !|||.!. !! !!:! !| IleGluAspSerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerI 194671 : ATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCA : 194730 205 : leValSerSerAlaThrValGlyAlaCysSerLeuThrAlaValPheAlaMetHisAl : 223 ||:!!! !|||.!!!.! !||| !! !||||||..!|||..!.!! !||||||.. leIleLeuSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCy 194731 : TCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTG : 194787 224 : aCysGly : 225 !|||||| sCysGly 194788 : CTGTGGC : 194795 vulgar: CbirOr25 10 225 . KQ414889.1 194156 194795 + 237 M 29 87 G 1 0 M 122 366 G 1 0 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194157 194795 237 + . gene_id 16 ; sequence CbirOr25 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194157 194795 . + . KQ414889.1 exonerate:protein2genome:local exon 194157 194795 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 194157 194795 237 + . alignment_id 16 ; Query CbirOr25 ; Align 194157 11 87 ; Align 194244 41 366 ; Align 194610 164 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 213 Query range: 264 -> 387 Target range: 224140 -> 224658 265 : PheIleSerArgValGluSerIleIleHisLysIleAlaLeuValGluLeuValGlyS : 284 |||:!!!!!!.!..!|||!.! !:!:!!.:!!:!!:!!!!!||||||!!!:!!|||! PheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValGluPheLeuGlyC 224141 : TTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGGAATTTCTAGGCT : 224198 285 : erThrIleAlaMetCysLeuValGlyTyrTyrIleIleLeuAspLeuAsnAlaLeuAs : 303 !!! !:!: !!!:||||||:!!|||||||||:!!|||:!!! ! !!!. !:!!!. ysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleValValArgLysLysIleTh 224199 : GCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTGGTACGAAAGAAAATCAC : 224255 304 : nLysAlaLysLeu{I} >>>> Target Intron 1 >>>> {le}SerAspPhe : 311 . ! :::||||||{:} 84 bp {!:}!!! !!||| rTyrSerLysLeu{L}-- -+{eu}ThrTyrPhe 224256 : GTATTcgaaatta{c}ag.........................gg{TG}ACTTACTTC : 224363 312 : IleValTyrValSerLeuAlaPheAsnSerPheIlePheCysTyrIleGlyGluThrL : 331 |||:!! !:!!||||||...|||||| |||||||||||||||||||||||| !: IleLeuLeuMetSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuV 224364 : ATACTACTCATGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGG : 224423 332 : euThrGluGlnCysLys{A} >>>> Target Intron 2 >>>> {rg}ValGl : 339 !!.!!|||||| |||{!} 65 bp {:!}:::|| alAlaGluGlnValLys{L}-+ +-{ys}IleGl 224424 : TAGCTGAAcaggtgaaa{a}at.........................aa{aa}attgg : 224512 340 : yGluIleAlaTyrMetThrAsnTrpTyrLysLeuHisHisLysThrAlaLeuAsnLeu : 358 |::!:!::!!||||||! !:!!||||||::!||| ! !!.! ! !||| !! ! yGlnValSerTyrMetIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCys 224513 : acaAGTGTCGTACATGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGC : 224569 359 : ValLeuIleIleAlaGlnSerAsnAsnValIleLysLeuThrAlaGlyLysLeuPheG : 378 :!!||||||||||||..!||||||::! !||||||||||||||||||!!.:!! !!: IleLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValG 224570 : ATTCTGATAATCGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCG : 224629 379 : lnLeuSerMetThrThrPheGlyAspIle : 387 !!|||!!!:!:|||||||||||||||:!! luLeuCysLeuThrThrPheGlyAspVal 224630 : AACTGTGTCTAACCACTTTCGGTGACGTA : 224658 vulgar: CbirOr25 264 387 . KQ414889.1 224140 224658 + 213 M 43 129 S 0 1 5 0 2 I 0 80 3 0 2 S 1 2 M 28 84 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224141 224658 213 + . gene_id 17 ; sequence CbirOr25 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224141 224270 . + . KQ414889.1 exonerate:protein2genome:local exon 224141 224270 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224271 224272 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local intron 224271 224354 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224353 224354 . + . intron_id 0 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 224355 224441 . + . KQ414889.1 exonerate:protein2genome:local exon 224355 224441 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224442 224443 . + . intron_id 2 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local intron 224442 224506 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 224505 224506 . + . intron_id 1 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 224507 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224507 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224141 224658 213 + . alignment_id 17 ; Query CbirOr25 ; Align 224141 265 129 ; Align 224357 309 84 ; Align 224509 338 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 188 Query range: 332 -> 387 Target range: 277548 -> 277713 333 : GluGlnCysLysArgValGlyGluIleAlaTyrMetThrAsnTrpTyrLysLeuHisH : 352 ..!|||||||||!:!|||||||||:!:!.!|||||||||||||||||| ! |||! ! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 353 : isLysThrAlaLeuAsnLeuValLeuIleIleAlaGlnSerAsnAsnValIleLysLe : 371 !!||| ! !|||||||||:!!|||||||||:!!::!|||!:! |||||||||:: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 372 : uThrAlaGlyLysLeuPheGlnLeuSerMetThrThrPheGlyAspIle : 387 :|||||||||||||||...|||:::|||:!! !||||||||||||:!! eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspVal 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTA : 277713 vulgar: CbirOr25 332 387 . KQ414889.1 277548 277713 + 188 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277713 188 + . gene_id 18 ; sequence CbirOr25 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277549 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277713 188 + . alignment_id 18 ; Query CbirOr25 ; Align 277549 333 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 184 Query range: 306 -> 398 Target range: 301713 -> 302151 307 : LeuIleSerAspPheIleValTyrValSerLeuAlaPheAsnSerPheIlePheCysT : 326 :!!:!:!!! !|||! !:!!! ..!|||!!!.!!||||||! !||||||||||||| MetLeuThrPhePheThrLeuLeuThrSerPheThrPheAsnIlePheIlePheCysT 301714 : ATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATATTCATATTCTGCT : 301771 327 : yrIleGlyGluThrLeuThrGluGln >>>> Target Intron 1 >>>> Cys : 335 |||||||||||! !|||:!!|||||| 80 bp ||| yrIleGlyGluIleLeuSerGluGln++ ++Cys 301772 : ACATCGGCGAGATTCTTTCCGAACAGgt.........................agTGT : 301878 336 : LysArgValGlyGluIleAlaTyrMetThrAsnTrpTyrLysLeuHisHisLysThrA : 355 !..!:!:!!|||..! !:!!||| !! !:!!||||||!!.|||! |||! !| SerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgA 301879 : AGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAG : 301938 356 : laLeuAsnLeuValLeuIleIleAlaGlnSerAsnAsnValIleLysLeuThrAlaGl : 374 ||! !:!!|||:!!|||:!!! !!.! !|||.!. !! ! |||||||||||||| laTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGl 301939 : CATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGG : 301995 375 : yLysLeuPheGlnLeuSerMetThrThrPheGlyAsp >>>> Target Intron : 387 ||||:!!.!!.!.||||||:!!!.!||||||.!!..! 82 bp yLysIleIleAspLeuSerLeuAsnThrPheSerSer++ 301996 : GAAAATAATCGACTTATCCTTGAATACATTCAGCTCTgt................... : 302036 388 : 2 >>>> IleIleLysSerSerValIleTyrLeuAsnMetLeu : 398 :!::!:|||!!!||||||:!:|||||||||:!:||| ++ValValLysThrSerValValTyrLeuAsnLeuLeu 302037 : ......agGTGGTGAAAACATCGGTGGTGTACTTGAATTTACTG : 302151 vulgar: CbirOr25 306 398 . KQ414889.1 301713 302151 + 184 M 28 84 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301714 302151 184 + . gene_id 19 ; sequence CbirOr25 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301714 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301714 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302151 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302151 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301714 302151 184 + . alignment_id 19 ; Query CbirOr25 ; Align 301714 307 84 ; Align 301878 335 156 ; Align 302116 387 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 333 -> 393 Target range: 254271 -> 254451 334 : GlnCysLysArgValGlyGluIleAlaTyrMetThrAsnTrpTyrLysLeuHisHisL : 353 |||||| !!:!|||||||||:!:!.!|||||||||:!!|||||| ! |||! !!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 354 : ysThrAlaLeuAsnLeuValLeuIleIleAlaGlnSerAsnAsnValIleLysLeuTh : 372 :!! ! !|||:!!|||:!!|||||||||.!!!:!|||||| |||:!!:!!:!!|| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 373 : rAlaGlyLysLeuPheGlnLeuSerMetThrThrPheGlyAspIleIleLysSerSer : 391 ||||||||||:::|||...:::|||:!: !||||||||||||:!!! !:!!!!!!:! rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 254443 392 : ValIle : 393 :!!:!! LeuVal 254444 : CTTGTT : 254451 vulgar: CbirOr25 333 393 . KQ414889.1 254271 254451 + 175 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254451 175 + . gene_id 20 ; sequence CbirOr25 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254451 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254451 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254451 175 + . alignment_id 20 ; Query CbirOr25 ; Align 254272 334 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 306 -> 396 Target range: 291395 -> 292578 307 : LeuIleSerAspPheIleValTyrValSerLeuAlaPheAsnSerPheIlePheCysT : 326 :!!:!!!!! !! !!! !:!! !..!|||!!!.!!||||||! !.!.|||||||||| IleLeuThrTyrValThrLeuLeuThrSerPheThrPheAsnIleLeuIlePheCysT 291396 : ATATTAACATACGTCACTCTCCTCACTTCTTTCACTTTCAACATACTGATATTCTGTT : 291453 327 : yrIleGlyGluThrLeuThrGluGln >>>> Target Intron 1 >>>> Cys : 335 ||:!!|||||| !||| !! !||| 913 bp !! yrValGlyGluLeuLeuLeuGlyGln++ ++Gly 291454 : ACGTTGGCGAACTTCTTCTTGGACAGgt.........................agGGT : 292393 336 : LysArgValGlyGluIleAlaTyrMetThrAsnTrpTyrLysLeuHisHisLysThrA : 355 !....!:!!!.!.!. !:!!||| |||.!.||||||!!.|||! ...::!! !| SerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgArgLysA 292394 : AGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGG : 292453 356 : laLeuAsnLeuValLeuIleIleAlaGlnSerAsnAsnValIleLysLeuThrAlaGl : 374 ||! !:!!:!!||||||:!::!!||| !!!!!!.:!! !||||||||||||||||| laArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuThrAlaGl 292454 : CTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGG : 292510 375 : yLysLeuPheGlnLeuSerMetThrThrPheGlyAspIleIleLysSerSerValIle : 393 ||||:!!||| ||||||:!!!.!|||||||||! !:!! !:!!|||!.!:!!:!! yLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSerLysLeuVal 292511 : CAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCAAAACTAGTC : 292567 394 : TyrLeuAsn : 396 ! :!!:!! LeuIleHis 292568 : TTGATACAC : 292578 vulgar: CbirOr25 306 396 . KQ414889.1 291395 292578 + 172 M 28 84 5 0 2 I 0 909 3 0 2 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291396 292578 172 + . gene_id 21 ; sequence CbirOr25 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291396 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291396 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291396 292578 172 + . alignment_id 21 ; Query CbirOr25 ; Align 291396 307 84 ; Align 292393 335 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 333 -> 392 Target range: 238625 -> 238802 334 : GlnCysLysArgValGlyGluIleAlaTyrMetThrAsnTrpTyrLysLeuHisHisL : 353 |||||| !!:!|||||||||:!:!.!|||||||||:!!|||||| ! |||! !!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 354 : ysThrAlaLeuAsnLeuValLeuIleIleAlaGlnSerAsnAsnValIleLysLeuTh : 372 :!! ! !|||:!!|||:!!||||||||| !!:!|||||| |||:!!|||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 373 : rAlaGlyLysLeuPheGlnLeuSerMetThrThrPheGlyAspIleIleLysSerSer : 391 ||||||||||:!!!!.!!.:!!|||:!: !||||||||||||:!!! !:!!!!!!:! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 392 : Val : 392 :!! Leu 238798 : CTT : 238802 vulgar: CbirOr25 333 392 . KQ414889.1 238625 238802 + 167 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238802 167 + . gene_id 22 ; sequence CbirOr25 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238802 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238802 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238802 167 + . alignment_id 22 ; Query CbirOr25 ; Align 238626 334 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 333 -> 387 Target range: 264723 -> 264885 334 : GlnCysLysArgValGlyGluIleAlaTyrMetThrAsnTrpTyrLysLeuHisHisL : 353 |||||||||!:!|||||||||:!:!.!||||||:!!||||||||| ! |||! !:!!| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 354 : ysThrAlaLeuAsnLeuValLeuIleIleAlaGlnSerAsnAsnValIleLysLeuTh : 372 || ! !|||:!!|||:!!||||||||| !::!|||!:! |||.!!|||!!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 373 : rAlaGlyLysLeuPheGlnLeuSerMetThrThrPheGlyAspIle : 387 ||||||||||:!!.!!!!.:!!|||||| !||||||.!!|||:!! rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: CbirOr25 333 387 . KQ414889.1 264723 264885 + 167 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264885 167 + . gene_id 23 ; sequence CbirOr25 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264885 167 + . alignment_id 23 ; Query CbirOr25 ; Align 264724 334 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 325 -> 387 Target range: 272990 -> 273176 326 : TyrIleGlyGluThrLeuThrGluGlnCysLysArgValGlyGluIleAlaTyrMetT : 345 |||::: ::: ::: |||||||||::::::||||||:!!!.!||||||| TyrLeuProLysLysAsnSer***GlnCysLysLysIleGlyGluValValTyrMetT 272991 : TACttaccgaagaaaaattcttaacagtgtaaaaaaattggcGAGGTAGTTTACATGA : 273048 346 : hrAsnTrpTyrLysLeuHisHisLysThrAlaLeuAsnLeuValLeuIleIleAlaGl : 364 ||||||||||| ! |||! ! !||| ! !|||:!!|||:!!|||||||||:!!:: hrAsnTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerAr 273049 : CGAACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAG : 273105 365 : nSerAsnAsnValIleLysLeuThrAlaGlyLysLeuPheGlnLeuSerMetThrThr : 383 !!!!!:! !|||||||||:!!|||||||||!:!:!! !!! :!!|||:!! !||| gCysSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThr 273106 : ATGCAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACG : 273162 384 : PheGlyAspIle : 387 |||||||||:!! PheGlyAspVal 273163 : TTCGGCGATGTA : 273176 vulgar: CbirOr25 325 387 . KQ414889.1 272990 273176 + 167 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272991 273176 167 + . gene_id 24 ; sequence CbirOr25 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272991 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 272991 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272991 273176 167 + . alignment_id 24 ; Query CbirOr25 ; Align 272991 326 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 332 -> 387 Target range: 283273 -> 283438 333 : GluGlnCysLysArgValGlyGluIleAlaTyrMetThrAsnTrpTyrLysLeuHisH : 352 ..!|||||||||!:!|||||||||:!:!.!||||||||||||! !!:! ! |||! ! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 353 : isLysThrAlaLeuAsnLeuValLeuIleIleAlaGlnSerAsnAsnValIleLysLe : 371 !!||| ! !|||||||||:!!|||||||||:!!::!|||!:! |||||||||:: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 372 : uThrAlaGlyLysLeuPheGlnLeuSerMetThrThrPheGlyAspIle : 387 :||||||...||||||...|||::!||| ! !||||||! !|||:!! eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspVal 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTA : 283438 vulgar: CbirOr25 332 387 . KQ414889.1 283273 283438 + 154 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283438 154 + . gene_id 25 ; sequence CbirOr25 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283438 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283438 154 + . alignment_id 25 ; Query CbirOr25 ; Align 283274 333 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 181 -> 274 Target range: 202712 -> 202990 182 : IleIleAspThrArgLeuSerProValAsnGluIleAlaIleValMetGlnPheThrS : 201 |||||||||..!|||! !|||||||||||||||||| !.!! !!!:!:!.!!..!: IleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleValA 202713 : ATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAG : 202770 202 : erThrLeuIleValSerSerAlaThrValGlyAlaCysSerLeuThrAlaValPheAl : 220 !!..!:!!:!!:!! !.!!!.!|||||||||||||||!!!|||||||||:!!||||| laValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAl 202771 : CTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGC : 202827 221 : aMetHisAlaCysGlyGlnLeuAsnLeuLeuTyrSerGlnLeuAsnLysLeuValGlu : 239 |:!:|||! !|||||||||:!!:!!:!!||| :!! !|||.!. ! |||:!!!!: aValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMetAsp 202828 : GGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGAT : 202884 240 : AspGlnGluLys--GluAsnTyrIleAlaGluArgArgLeuAlaSerIleValSerHi : 258 ! !!::..! ! ##||| ! !!:!: .!. !!|||:!!!.!!!!|||||||||!! GlyArgSerAsp##Glu***AsnVal---AsnGlyArgMetValThrIleValSerGl 202885 : GGTCGTTCGGATATGAGTAAAATGTG---AATGGCAGAATGGTGACCATCGTGAGCCA : 202940 259 : sHisLeuArgValLeuSerPheIleSerArgValGluSerIleIleHis : 274 .|||:!!|||:!!|||!.!! !:!:..!!.! !.!.||| !||| nHisIleArgIleLeuLysCysValGluHisProAsnSerArgCysHis 202941 : ACACATACGGATACTGAAATGTGTGGAACATCCTAATTCACGGTGTCAC : 202990 vulgar: CbirOr25 181 274 . KQ414889.1 202712 202990 + 149 M 62 186 F 0 2 M 4 12 G 1 0 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202713 202990 149 + . gene_id 26 ; sequence CbirOr25 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202713 202990 . + . KQ414889.1 exonerate:protein2genome:local exon 202713 202990 . + . insertions 0 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local similarity 202713 202990 149 + . alignment_id 26 ; Query CbirOr25 ; Align 202713 182 186 ; Align 202901 244 12 ; Align 202913 249 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 330 -> 387 Target range: 214851 -> 215022 331 : LeuThrGluGlnCysLysArgValGlyGluIleAlaTyrMetThrAsnTrpTyrLysL : 350 :!! !:!!|||||||||!:!|||||||||:!!:!!||||||! !.!.||||||::!| MetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrArgL 214852 : ATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACCGAT : 214909 351 : euHisHisLysThrAlaLeuAsnLeuValLeuIleIleAlaGlnSerAsnAsnValIl : 369 ||! !!!.! ! !||| !! !:!!||||||!!:|||..!||||||::: !:! euProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSerVa 214910 : TGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATCCGT : 214966 370 : eLysLeuThrAlaGlyLysLeuPheGlnLeuSerMetThrThrPheGlyAspIle : 387 !|||!!!|||||||||!!.:!! ! :!!||||||!!:!:!||||||.!!..!:!! lLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214967 : CAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215022 vulgar: CbirOr25 330 387 . KQ414889.1 214851 215022 + 147 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214852 215022 147 + . gene_id 27 ; sequence CbirOr25 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214852 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214852 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214852 215022 147 + . alignment_id 27 ; Query CbirOr25 ; Align 214852 331 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 334 -> 397 Target range: 287063 -> 287252 335 : CysLysArgValGlyGluIleAlaTyrMetThrAsnTrpTyrLysLeuHisHisLysT : 354 ||| !!:!|||||| ! !.!!||||||! !:!!||||||:::|||! |||| CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysT 287064 : tGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAA : 287121 355 : hrAlaLeuAsnLeuValLeuIleIleAlaGlnSerAsnAsnValIleLysLeuThrAl : 373 |||||! !..!|||:!!||||||.!!||| !||||||::! !|||||||||||||| hrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 287122 : CAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 287178 374 : aGlyLysLeuPheGlnLeuSerMetThrThrPheGlyAspIleIleLysSerSerVal : 392 |||||||:!!.!!.!.||||||:!:!:!!:!||| !!..!:!:! !! ! !!:!:!! aGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeu 287179 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTA : 287235 393 : IleTyrLeuAsnMet : 397 !|||! !:!!:!! SerTyrTyrHisLeu 287236 : TCCTATTATCATTTG : 287252 vulgar: CbirOr25 334 397 . KQ414889.1 287063 287252 + 139 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287064 287252 139 + . gene_id 28 ; sequence CbirOr25 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287064 287252 139 + . alignment_id 28 ; Query CbirOr25 ; Align 287064 335 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 334 -> 397 Target range: 280276 -> 280465 335 : CysLysArgValGlyGluIleAlaTyrMetThrAsnTrpTyrLysLeuHisHisLysT : 354 ||| !!:!||||||! ! !.!!||||||! !:!!||||||:::|||! |||! CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysL 280277 : TGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGA : 280334 355 : hrAlaLeuAsnLeuValLeuIleIleAlaGlnSerAsnAsnValIleLysLeuThrAl : 373 !|||! !..!|||:!!||||||.!!||| !||||||::! !|||||||||||||| ysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 280335 : AAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 280391 374 : aGlyLysLeuPheGlnLeuSerMetThrThrPheGlyAspIleIleLysSerSerVal : 392 |||||||:!!.!!.!.||||||:!:!:!!:!||| !!..!:!:! !! ! !!:!:!! aGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeu 280392 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTA : 280448 393 : IleTyrLeuAsnMet : 397 !|||! !:!!:!! SerTyrTyrHisLeu 280449 : TCCTATTATCATTTG : 280465 vulgar: CbirOr25 334 397 . KQ414889.1 280276 280465 + 134 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280277 280465 134 + . gene_id 29 ; sequence CbirOr25 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280277 280465 134 + . alignment_id 29 ; Query CbirOr25 ; Align 280277 335 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 337 -> 387 Target range: 206251 -> 206401 338 : ValGlyGluIleAlaTyrMetThrAsnTrpTyrLysLeuHisHisLysThrAlaLeuA : 357 |||||| !! !:!!! !! !..!|||||||||:::|||! :!!!:! !|||! !: ValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgS 206252 : GTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCT : 206309 358 : snLeuValLeuIleIleAlaGlnSerAsnAsnValIleLysLeuThrAlaGlyLysLe : 376 :!:!!:!!||||||||||||..!|||||| !! !|||||||||||||||||||||:! erMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMe 206310 : CTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAAT : 206366 377 : uPheGlnLeuSerMetThrThrPheGlyAspIle : 387 !|||:!!:!!|||:!:.!!!:!||| !|||:!! tPheGluMetSerLeuAlaSerPheThrAspVal 206367 : GTTCGAAATGTCTTTAGCTAGTTTCACCGATGTA : 206401 vulgar: CbirOr25 337 387 . KQ414889.1 206251 206401 + 128 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206252 206401 128 + . gene_id 30 ; sequence CbirOr25 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206252 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206252 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206252 206401 128 + . alignment_id 30 ; Query CbirOr25 ; Align 206252 338 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 337 -> 387 Target range: 305633 -> 305783 338 : ValGlyGluIleAlaTyrMetThrAsnTrpTyrLysLeuHisHisLysThrAlaLeuA : 357 |||||| ! !..!!:!|||! !!:!|||||| ! |||! !|||||| !! !. ValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisG 305634 : GTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATG : 305691 358 : snLeuValLeuIleIleAlaGlnSerAsnAsnValIleLysLeuThrAlaGlyLysLe : 376 .!|||:!!||||||||||||..!|||!:!||| ! !|||:!!!:!|||||||||:! lyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysVa 305692 : GTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGT : 305748 377 : uPheGlnLeuSerMetThrThrPheGlyAspIle : 387 ! !!.!.||||||:!::!!|||||||||:!!:!: lValAspLeuSerLeuSerThrPheGlyAsnVal 305749 : AGTTGATTTATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: CbirOr25 337 387 . KQ414889.1 305633 305783 + 122 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305634 305783 122 + . gene_id 31 ; sequence CbirOr25 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305634 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305634 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305634 305783 122 + . alignment_id 31 ; Query CbirOr25 ; Align 305634 338 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 333 -> 364 Target range: 261922 -> 262015 334 : GlnCysLysArgValGlyGluIleAlaTyrMetThrAsnTrpTyrLysLeuHisHisL : 353 ||||||..!!:!||||||!!::!!!.!|||||||||||||||||| ! |||! ! !!| GlnCysSerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuProAspL 261923 : CAGTGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACCTGATA : 261980 354 : ysThrAlaLeuAsnLeuValLeuIleIleAlaGln : 364 ||!:! !|||:!!|||:!!||||||||||||!:! ysSerIleLeuAspLeuIleLeuIleIleAlaArg 261981 : AAAGTATCCTTGATTTGATTTTGATCATTGCACGA : 262015 vulgar: CbirOr25 333 364 . KQ414889.1 261922 262015 + 105 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261923 262015 105 + . gene_id 32 ; sequence CbirOr25 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 261923 262015 . + . KQ414889.1 exonerate:protein2genome:local exon 261923 262015 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 261923 262015 105 + . alignment_id 32 ; Query CbirOr25 ; Align 261923 334 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 12 -> 154 Target range: 299680 -> 300111 13 : AspAsnAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpP : 32 |||! !!|||!!!||||||:!! !!:!|||!!.|||||||||||||||!.!|||! AspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpA 299681 : GACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGC : 299738 33 : roCysIleValSerArgThrThrTrpThrIlePheLeuPro<-><->LeuGlnIleVa : 49 !! :!!! !..!|||:!!!:! ! ! ! !||| ! :!!! !!:.. rgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMetTh 299739 : GATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATGAC : 299795 50 : lIleSerTrpIleIleValAlaIleIleThrValProCysLeuLeuHisValLeuPhe : 68 !|||!!!!:: !! !:!! !.!!|||..!:!!|||! ! !! !:!!:!!!!!||| rIleCysPheSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePhePhe 299796 : AATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCTTC : 299852 69 : GluValLysAspIleGlnThrArgLeuHisValIleGlyProLeuLeuHisArgLeuI : 88 ! !! !|||..!|||!!...!!:!:!! ! |||.!!||||||:!! ! ! !!||| AlaGluLysSerIleHisValLysValLysValPheGlyProValGlyPheCysLeuS 299853 : GCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCTCT : 299912 89 : leGlyTrpValAsnTyrTrpThrLeuLeuAsnCysSerAspAspIleArgAsnCysIl : 107 !..! |||!!.|||!! !|||! ! !.!!! !! .!!..!...||||| erSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCysIl 299913 : CCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGCAT : 299969 108 : eLeuHisMetGluThrAsp--TrpLysThrMetArgArgThrGluAspArgGluValM : 126 |! !|||:!:|||! !|||## ... !:!!.!. !!||| !:!!| eGlnHisValGluArgAsp##---UnkUnkUnkUnkUnkSerAsnHisArgThrIleM 299970 : CCAACACGTCGAGAGAGACNN---NNNNNNNNNNNNNNTTCGAATCATCGTACGATCA : 300025 127 : etLeuGlnTyrAlaLysPheGlyArgPheLeuAlaIleValCysGlyLeuIleMetHi : 145 |||||::!|||!.!! .!..!!||| !|||.!!! !||||||!.!:!!.!!:!::! etLeuArgTyrValThrMetSerArgAsnLeuThrThrValCysAlaValPheLeuTy 300026 : TGTTGAGATACGTGACTATGAGCAGAAATCTGACGACCGTGTGCGCCGTGTTTCTTTA : 300082 146 : sGlyGlyThrLeuLeuPheSerIleVal : 154 !!.!||| !:!!! !!:! !! ||| rAlaGlyGlyMetSerTyrHisThrVal 300083 : CGCAGGTGGTATGTCGTATCACACGGTG : 300111 vulgar: CbirOr25 12 154 . KQ414889.1 299680 300111 + 105 M 33 99 G 0 6 M 68 204 F 0 2 G 1 0 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299681 300111 105 + . gene_id 33 ; sequence CbirOr25 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299681 300111 . + . KQ414889.1 exonerate:protein2genome:local exon 299681 300111 . + . insertions 6 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local similarity 299681 300111 105 + . alignment_id 33 ; Query CbirOr25 ; Align 299681 13 99 ; Align 299786 46 204 ; Align 299992 115 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 289 -> 334 Target range: 214605 -> 214740 290 : LeuValGlyTyrTyrIleIleLeuAspLeuAsnAlaLeuAsnLysAlaLysLeuIleS : 309 :::||| ::: |||::: :!:! !|||:!! !||| !.!!! !:!!! IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 310 : erAspPheIleValTyrValSerLeuAlaPheAsnSerPheIlePheCysTyrIleGl : 328 !! !! ! :!::!!|||:!!||||||...|||||| |||||||||||||||||||| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 329 : yGluThrLeuThrGluGln : 334 |||| !:!!:!!|||||| yGluLeuValSerGluGln 214721 : CGAGCTTGTGTCTGAACAG : 214740 vulgar: CbirOr25 289 334 . KQ414889.1 214605 214740 + 104 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 214740 104 + . gene_id 34 ; sequence CbirOr25 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 214740 104 + . alignment_id 34 ; Query CbirOr25 ; Align 214606 290 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 786 Query range: 8 -> 394 Target range: 256622 -> 258738 9 : ValAspIleAlaTyrGluAsnValAsnAspTyrSerLeuGlnIleAsnArgTrpCysL : 28 ||| ! ! !!:!:!!!:! !!:!|||||||||||||||:!:|||||||||! !| ValLysThrAsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheL 256623 : GTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCC : 256680 29 : euLysProIleGlyAlaTrpProLeuLysAspSer<-><->AlaIleGluLysThrIl : 45 |||||||||||||||||||||||! !..!...||| .!!:!!|||::!!.!:! euLysProIleGlyAlaTrpProProSerSerSerThrThrThrLeuGluArgAsnVa 256681 : TGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCGAAACGT : 256737 46 : eAlaPheIleGlnValAlaAlaCysSerThrThrIleAlaIleValThrValProCys : 64 !:!!.!!:!! ! ! !!.!|||! ! !:!!||| !.!!..! !:!!|||||| lSerIleValLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIleProCys 256738 : TTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGT : 256794 65 : IleLeuTyrValLeuLeuGluAspAsnSerPheLysMetLysLeuSerAlaLeuGlyP : 84 :!:|||:!!|||!!!|||!!:|||:!!|||||| ! ||||||:::... ...|||| LeuLeuHisValPheLeuAspAspAspSerPheTyrMetLysValLysAsnPheGlyP 256795 : TTGCTCCATGTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtC : 256854 85 : roLeuLeuHisArgIleIleGlySerIleSerTyrUnkThrLeuLeuLysArgSerLy : 103 ||:!! !||| !!||||||.!!!!! !!:!|||... !|||||| !!:!.!!|| roMetSerHisTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLy 256855 : CTATGAGCCATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAA : 256911 104 : sAspIleArgAspCysIleGlnHisMetGlnAlaAspTrpArgLeuValArgArgVal : 122 |||||||||| !!|||:!!:!!|||!!::!!.!!|||||||||:!!|||||||||! ! sAspIleArgTyrCysValGluHisIleGluThrAspTrpArgMetValArgArgGlu 256912 : AGACATACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAG : 256968 123 : GlnAspArgGluValMetLeuGlnTyrAlaLysPheGlyArgPheIleAlaGlyIleG : 142 :!!|||!:!:!!||||||:!!:!! !!|||!:!|||||||||!:!:!:||| !.!! LysAspGlnGlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheC 256969 : AAGGATCAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTT : 257028 143 : lyAlaIleIleMetUnkGlyGlyGlnLeuLeuPheGlyThrThrArgAlaIleLysTh : 161 !!||| !|||||| .!!||| ... ||| ..!:!! !|||:!:!!.|| ysAlaAlaIleMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAsnTh 257029 : GCGCAGCTATCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACAC : 257085 162 : rValLysIleThrValGlyAsnGlnThrPheThrThrHisProMetThrCysProAla : 180 |! !! !||| !|||||||||:!!||| ! !..!!.. !:!: !! ! !!!.! rGluIleIleHisValGlyAsnGluThrThrIleValArgValLeuProValThrVal 257086 : GGAGATAATTCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTG : 257142 181 : TyrSerArgIleIleAspThrArgPheSerProMetAsnGluIleMetLeuValIleG : 200 |||!.!!:!:!::!::!!..! ! ||||||! !|||||||||:!!:!! !!!!:| TyrLysLysLeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheMetG 257143 : TACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGC : 257202 201 : lnPheValSerAlaPheAlaValSerSerAlaIleValSerValCysSerLeuAlaAl : 219 || ! !|||:!!.!! !!.!!!!!!!::!! !||||||:!!! !||||||||||| lnThrTrpSerSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAlaAl 257203 : AAACTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGC : 257259 220 : aValPheAlaMetHisAlaCysGlyGlnLeuAsnValLeuTyrAlaTrpLeuAsnAsp : 238 ||||||||||! ||||||! !|||||||||!.!|||||| :!!|||:!!!..!!: aValPheAlaThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGlu 257260 : TGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAG : 257316 239 : LeuIleGluGluTyrGluMetGlyAspArgSerValAsp<->GlnLysLeuAlaIleI : 257 !!!:!:.!.|||! ..!! ! ::::::::: :!!:!!:!!!.!:!:| PheValAsnGluSerArgAsnArgGluLysThrPheProPheLysGlnIleGlyValI 257317 : TTTGTGAATGAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGA : 257376 258 : leValGluHisHisLeuArgValLeu{Se} >>>> Target Intron 1 >>>> : 266 ||||||||||||||||||||||||||{||} 76 bp leValGluHisHisLeuArgValLeu{Se}++ + 257377 : TTGTGGAGCATCATTTAAGAGTGCTG{AG}gt.........................a : 257479 267 : {r}LeuValThrCysMetGluSerIleIleHisLysValCysPheValMetLeuAla : 284 {|}!!!:!!:!!! !!!:|||..!:!:!!::!!::!:!!||||||:!! !||| ! +{r}PheIleSerTyrIleGluGluValMetAsnArgIleCysPheLeuGluLeuPhe 257480 : g{T}TTCATATCATATATCGAGGAAGTGATGAACCGAATATGTTTTTTAGAGTTGTTT : 257533 285 : GlySerThrLeuAsnMetCysLeuLeuGlyTyrTyrValIleMet >>>> Target : 300 !!!!!|||||| !!!:|||:!!||||||||||||:!!:!! ! 7 ArgCysThrLeuAlaIleCysMetLeuGlyTyrTyrIleLeuAla++ 257534 : AGATGCACGCTGGCTATATGCATGCTGGGATACTACATTCTTGCGgt........... : 257583 301 : Intron 2 >>>> CysProIleLeuHisTyrIleTyrLeuValSerPheAsnIle : 313 14 bp !!!! :!! ! :::|||||||||||| -+SerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIle 257584 : ..............tgagttcgtaCTTTATGATACTCATATcactttctttcaatatt : 258334 314 : PheIlePheCysTyrIleGlyGluIleLeuThrAspGln >>>> Target Intro : 327 |||:::...||||||||||||||||||||||||!!:||| 90 bp PheValIleCysTyrIleGlyGluIleLeuThrGluGln++ 258335 : tttgtaatatgttACATAGGTGAAATATTAACAGAACAGgt................. : 258378 328 : n 3 >>>> SerLysAsnIleGluAsnMetValTyrMetThrAspTrpTyrUnkLeu : 342 !!!|||!!.:!!! :!!:!!||||||||||||||||||||| ||| ++CysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeu 258379 : ........agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTA : 258511 343 : ProHisLysThrAlaLeuCysPheIleLeuIleIleMetArgSerAsnTyrThrIleL : 362 ||| !!|||! ! !||| !!!.||||||:!!||| ||||||!:! ..!:!!: ProAspLysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValG 258512 : CCTGACAAAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTC : 258571 363 : ysMetThrAlaGlyAsnLeuValTyrLeuLeuIleAlaThrPheGlyAsp >>>> T : 379 !!!!:|||||||||...... :::::!! !||| !||||||.!!||| lnIleThrAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAsp++ 258572 : AAATCACCGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATgt...... : 258624 380 : arget Intron 4 >>>> MetIleLysThrSerMetAlaTyrLeuAsnLeuLeuA : 391 69 bp :!:||||||||||||.!.||||||||||||||||||| ++ValIleLysThrSerPheAlaTyrLeuAsnLeuLeuA 258625 : ...................agGTAATAAAAACCTCTTTCGCGTATTTGAATTTACTGC : 258727 392 : rgThrMetThr : 394 || !:!::!! rgGlnValSer 258728 : GTCAAGTATCG : 258738 vulgar: CbirOr24PSE 8 394 . KQ414889.1 256622 258738 + 786 M 31 93 G 0 6 M 212 636 G 0 3 M 14 42 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 33 99 5 0 2 I 0 710 3 0 2 M 27 81 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256623 258738 786 + . gene_id 1 ; sequence CbirOr24PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256623 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256623 257404 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258294 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258293 258294 . + . intron_id 1 ; splice_site "tg" KQ414889.1 exonerate:protein2genome:local cds 258295 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258295 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256623 258738 786 + . alignment_id 1 ; Query CbirOr24PSE ; Align 256623 9 93 ; Align 256722 40 636 ; Align 257361 252 42 ; Align 257482 267 99 ; Align 258295 300 81 ; Align 258466 327 156 ; Align 258691 379 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 755 Query range: 17 -> 379 Target range: 232456 -> 235147 18 : AspTyrSerLeuGlnIleAsnArgTrpCysLeuLysProIleGlyAlaTrpPro<->< : 36 !!:||||||:!!|||:!:|||||||||! !|||! !|||!!:|||||||||||| GluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgV 232457 : GAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTG : 232514 37 : ->LeuLysAspSerAlaIleGluLysThrIleAlaPheIleGlnValAlaAlaCysSe : 54 !:!! !||| ! !:!!:!! !:!!||| :!: ! ! !.!!||| alThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHi 232515 : TTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCA : 232571 55 : rThrThrIleAlaIleValThrValProCysIleLeuTyrValLeuLeuGluAspAsn : 73 !:!! !!!: ! ! !! !|||||||||||||||!:!:!!|||!!!||||||!.. sSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThr 232572 : TTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACG : 232628 74 : SerPheLysMetLysLeuSerAlaLeuGlyProLeuLeuHisArgIleIleGlySerI : 93 |||.!.:!! !:!:!!!.!:!!:!!||||||:!! !||| !:!:!!:|||..!: SerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluL 232629 : AGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAAT : 232688 94 : leSerTyrUnkThrLeuLeuLysArgSerLysAspIleArgAspCysIleGlnHisMe : 112 !:!:!||| !|||||| !!:!:!!!!.||||||! ! !!|||:!::!!!!.:! euAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnVa 232689 : TGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGT : 232745 113 : tGlnAlaAspTrpArgLeuValArgArgValGlnAspArgGluValMetLeuGlnTyr : 131 !:!! !||||||||| !|||!:!!:! ! !!|||!!::!!||||||:!! !! lLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsn 232746 : GAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAAC : 232802 132 : AlaLysPheGlyArgPheIleAlaGlyIleGlyAlaIleIleMetUnkGlyGlyGlnL : 151 ||||||.!!||||||! |||||| !!|||!.!|||.!! !||| !||| AlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValG 232803 : GCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCG : 232862 152 : euLeuPheGlyThrThrArgAlaIleLysThrValLysIleThrValGlyAsnGlnTh : 170 !! ! !! !! !..!! !!.!:!!:::! ! !! !.!! !|||||||||:!!!: lySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSe 232863 : GCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAG : 232919 171 : rPheThrThrHisProMetThrCysProAlaTyrSerArgIleIleAspThrArgPhe : 189 !!:!:!!! !:!!|||:!: !!||| !! !|||!!!!:!:!:!!:|||||||||||| rTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPhe 232920 : TTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTC : 232976 190 : SerProMetAsnGluIleMetLeuValIleGlnPheValSerAlaPheAlaValSerS : 209 ||||||! !||||||||||||!!!|||:!!|||! !:!!|||!.!||| !|||!:!| SerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnS 232977 : AGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACT : 233036 210 : erAlaIleValSerValCysSerLeuAlaAlaValPheAlaMetHisAlaCysGlyGl : 228 ||!.!! !|||.!!!.!|||.!!|||!.!||||||.!.|||||||||||||||||||| erValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGl 233037 : CCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACA : 233093 229 : nLeuAsnValLeuTyrAlaTrpLeuAsnAspLeuIleGluGluTyrGluMetGlyAsp : 247 ||||||||||:!! :!! |||:!!||||||:!:!!:! ! ! ! !..!! !!!: nLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGlyGlnGluGlu 233094 : GCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAGGAGGAG : 233150 248 : ArgSerValAspGlnLysLeuAlaIleIleValGluHisHisLeuArgValLeu{Se} : 266 ||| !!.!.!.::!||||||!.!.!!|||||||||||||||||||||..!|||{||} ArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeu{Se} 233151 : AGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTA{AG} : 233207 267 : >>>> Target Intron 1 >>>> {r}LeuValThrCysMetGluSerIleIl : 275 1315 bp {|}!!!:!! ! !!!:|||!:!:!!!! ++ ++{r}PheIleArgAsnIleGluAsnValMe 233208 : gt.........................ag{T}TTTATACGGAATATAGAGAACGTTAT : 234549 276 : eHisLysValCysPheValMetLeuAlaGlySerThrLeuAsnMetCysLeuLeuGly : 294 ::!! !:!!|||.!.||| !|||!.!|||!!!|||||||||||||||:!!|||! ! tAsnLeuIleCysLeuValGluLeuValGlyCysThrLeuAsnMetCysMetLeuGlu 234550 : GAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACGTTGAACATGTGCATGCTCGAG : 234606 295 : TyrTyrValIleMetCysProIleLeuHisTyrIleTyrLeu{Va} >>>> Targe : 309 ||||||:!!:!!! ! ! !.!! ::: ||| {:!} TyrTyrLeuLeuThrValArgPheThrAsnLysIleLeuArg{Me}-+ 234607 : TATTATTTACTCACGGTACGTTTTactaataaaattcttcga{at}tt.......... : 234655 310 : t Intron 2 >>>> {l}SerPheAsnIlePheIlePheCysTyrIleGlyGluIl : 322 210 bp {!}!!!|||||||||||||||||||||||||||||||||! +-{t}ThrPheAsnIlePheIlePheCysTyrIleGlyGluTh 234656 : ...............at{G}ACATTtaatatattcatattttgttACATCGGAGAGAC : 234900 323 : eLeuThrAspGln >>>> Target Intron 3 >>>> SerLysAsnIleGluA : 332 ||||||!!:||| 74 bp !!!! !!.:!!! !. rLeuThrGluGln++ ++CysThrLysValGlyG 234901 : GCTTACAGAGCAGgt.........................agTGTACCAAAGTCGGAG : 235004 333 : snMetValTyrMetThrAspTrpTyrUnkLeuProHisLysThrAlaLeuCysPheIl : 351 !.! ||||||||||||!!:|||||| ||||||||||||||||||||| !!!!.:! luLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuVa 235005 : AAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGT : 235061 352 : eLeuIleIleMetArgSerAsnTyrThrIleLysMetThrAlaGlyAsnLeuValTyr : 370 !:!!|||||| ||||||!:! ..!||||||!!:|||||||||!!.!!!:!! ! lMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheLeuGln 235062 : AATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAA : 235118 371 : LeuLeuIleAlaThrPheGlyAspMet : 379 :!!! !:!!|||||||||||||||:!! MetSerValAlaThrPheGlyAspVal 235119 : ATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: CbirOr24PSE 17 379 . KQ414889.1 232456 235147 + 755 M 18 54 G 0 6 M 230 690 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 42 126 S 0 2 5 0 2 I 0 206 3 0 2 S 1 1 M 17 51 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232457 235147 755 + . gene_id 2 ; sequence CbirOr24PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232457 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232457 233208 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234652 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234652 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234653 234654 . + . intron_id 2 ; splice_site "tt" KQ414889.1 exonerate:protein2genome:local intron 234653 234862 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234861 234862 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 234863 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234863 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232457 235147 755 + . alignment_id 2 ; Query CbirOr24PSE ; Align 232457 18 54 ; Align 232517 36 690 ; Align 234525 267 126 ; Align 234864 310 51 ; Align 234989 327 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 723 Query range: 8 -> 330 Target range: 259742 -> 261856 9 : ValAspIleAlaTyrGluAsnValAsnAspTyrSerLeuGlnIleAsnArgTrpCysL : 28 |||!!:! ::!!:! !:! !!:!|||||||||||||||.!!|||||||||! !| ValGluThrSerPheThrSerHisSerAspTyrSerLeuGlnPheAsnArgTrpPheL 259743 : GTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCCAATTTAATCGATGGTTCC : 259800 29 : euLysProIleGlyAlaTrpProLeuLysAspSerAla<-><->IleGluLysThrIl : 45 |||||||||||||||||||||||! !..!..!|||.!! :!!||||||! !|| euLysProIleGlyAlaTrpProProSerSerSerThrThrArgLeuGluLysIleIl 259801 : TGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCACGACCAGACTCGAGAAGATCAT : 259857 46 : eAlaPheIleGlnValAlaAlaCysSerThrThrIleAlaIleValThrValProCys : 64 |:!! !!|||! !:!! ! !|||! !!:!|||||| !:!!..! !:!!|||||| eSerValIleLeuIlePheIleCysTyrSerThrIleLeuValThrLeuIleProCys 259858 : CTCTGTTATCCTGATCTTTATCTGCTACAGTACCATACTGGTCACCCTGATCCCGTGC : 259914 65 : IleLeuTyrValLeuLeuGluAspAsnSerPheLysMetLysLeuSerAlaLeuGlyP : 84 :!!|||:!!:!!||||||||| ! .!.|||!!. ! |||||| !!.!!.!||||||| ValLeuHisMetLeuLeuGluLysGluSerLeuTyrMetLysThrLysValLeuGlyP 259915 : GTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGAAGGTGCTCGGTC : 259974 85 : roLeuLeuHisArgIleIleGlySerIleSerTyrUnkThrLeuLeuLysArgSerLy : 103 ||||| !||| !!.!!:!!|||!!!|||!:!|||...||||||||| !|||.!!!: roLeuThrHisTrpPheValGlyCysIleAsnTyrThrThrLeuLeuLeuArgGlyAr 259975 : CTCTTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTGTTGAGAGGCAG : 260031 104 : sAspIleArgAspCysIleGlnHisMetGlnAlaAspTrpArgLeuValArgArgVal : 122 !||||||! !..!|||:!::!!|||:!!:!! !|||||||||:!!:!!! !|||! ! gAspIleLeuSerCysValGluHisValGluAsnAspTrpArgIleIleThrArgGlu 260032 : AGACATACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGAATTATAACGAGGGAG : 260088 123 : GlnAspArgGluValMetLeuGlnTyrAlaLysPheGlyArgPheIleAlaGlyIleG : 142 :!!|||!:!.!.|||||||||::!||||||||||||||||||!:!:!!|||!.! ! LysAspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgTyrValAlaAlaSerC 260089 : AAGGATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGATACGTCGCTGCCTCTT : 260148 143 : lyAlaIleIleMetUnkGlyGlyGlnLeuLeuPheGlyThrThrArgAlaIleLysTh : 161 !!||| !.!!:!! |||||| |||! !||| !! !..!! !!.!:!:!..|| ysAlaAlaPheValGlnGlyGlyValLeuCysPheCysLeuValThrValLeuSerTh 260149 : GCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTCACGGTGTTGAGTAC : 260205 162 : rValLysIleThrValGlyAsnGlnThrPheThrThrHisProMetThrCysProAla : 180 |! ! !||| !|||||||||:!!||| ! !..!|||! !:!! !!||| !!!.! rGluValIleGlnValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaVal 260206 : AGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTGCCGTGCGCGGTG : 260262 181 : TyrSerArgIleIleAspThrArgPheSerProMetAsnGluIleMetLeuValIleG : 200 |||!.!..!:!:|||:!!..!!.! !||||||||||||||||||:!:||||||:!:| TyrLysGluLeuIleAsnValAsnAspSerProMetAsnGluIleValLeuValValG 260263 : TACAAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGATTGTTCTCGTCGTGC : 260322 201 : lnPheValSerAlaPheAlaValSerSerAlaIleValSerValCysSerLeuAlaAl : 219 |||||||||||!.!||| !|||!:!|||::!! !|||.!!:!!! !||||||||||| lnPheValSerGlyPheIleValAsnSerSerThrValGlyIlePheSerLeuAlaAl 260323 : AATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTTCAGTCTCGCGGC : 260379 220 : aValPheAlaMetHisAlaCysGlyGlnLeuAsnValLeuTyrAlaTrpLeuAsnAsp : 238 ||||.!..!! ||||||||||||||||||||||||||| ! !|||:!!!..!!: aValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMetGluTrpIleThrGlu 260380 : TGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAATGGATCACGGAG : 260436 239 : LeuIleGluGluTyrGluMetGlyAspArgSerValAsp<->GlnLysLeuAlaIleI : 257 !!!:!:!!:|||! ..!! !! ! !:!!.!!.! ! :!!:!!:!!!.!:!:| PheValAspGluSerArgAsnArgLysLysLysAlaProPheLysGluIleGlyValI 260437 : TTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTCCTTTCAAGGAGATCGGAGTGA : 260496 258 : leValGluHisHisLeuArgValLeu{Se} >>>> Target Intron 1 >>>> : 266 ||||||||||||||||||||!.!|||{!!} 257 bp leValGluHisHisLeuArgAlaLeu{Th}++ + 260497 : TTGTCGAACATCATTTGAGAGCACTC{AC}gt.........................a : 260780 267 : {r}LeuValThrCysMetGluSerIleIleHisLysValCysPheValMetLeuAla : 284 {!}!!!:!!:!! !!!!:|||..!:!:!!::!!::!:!!||||||:!! !||| ! +{r}PheIleSerArgIleGluAspValMetAsnArgIleCysPheLeuGluLeuPhe 260781 : g{C}TTCATATCGCGTATCGAGGATGTGATGAACCGGATATGCTTCCTGGAGTTGTTC : 260834 285 : GlySerThrLeuAsnMetCysLeuLeuGlyTyrTyrValIleMet >>>> Target : 300 !!!!!||||||:!!!!:||||||||||||||||||:!!:!!||| 8 ArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeuMet++ 260835 : AGGTGCACTCTGGATATATGTCTACTTGGCTACTATATTCTTATGgt........... : 260884 301 : Intron 2 >>>> CysProIleLeuHisTyrIleTyrLeuValSerPheAsnIle : 313 82 bp ! ! !! !!!! :!: !:!!!!!||||||:!! -+SerThrTyrPheMetMetLeuIleAlaIleCysPheAsnVal 260885 : ..............tgTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTA : 261803 314 : PheIlePheCysTyrIleGlyGluIleLeuThrAspGlnSerLysAsnIle : 330 ||||||.!!||||||||||||||||||||||||!!:||| !:!!:!!:!: PheIleIleCysTyrIleGlyGluIleLeuThrGluGlnValGlnHisLeu 261804 : TTTATAATCTGTTACATCGGTGAAATACTAACGGAACAGGTACAACATTTG : 261856 vulgar: CbirOr24PSE 8 330 . KQ414889.1 259742 261856 + 723 M 32 96 G 0 6 M 211 633 G 0 3 M 14 42 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 878 3 0 2 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259743 261856 723 + . gene_id 3 ; sequence CbirOr24PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259743 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259743 260524 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261763 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261762 261763 . + . intron_id 1 ; splice_site "TG" KQ414889.1 exonerate:protein2genome:local cds 261764 261856 . + . KQ414889.1 exonerate:protein2genome:local exon 261764 261856 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259743 261856 723 + . alignment_id 3 ; Query CbirOr24PSE ; Align 259743 9 96 ; Align 259845 41 633 ; Align 260481 252 42 ; Align 260783 267 99 ; Align 261764 300 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 635 Query range: 8 -> 298 Target range: 274353 -> 275306 9 : ValAspIleAlaTyrGluAsnValAsnAspTyrSerLeuGlnIleAsnArgTrpCysL : 28 ||| ! !!:!!!:!:!:!!!:!|||||||||||||||:!:|||||||||! !| ValThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheL 274354 : GTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCT : 274411 29 : euLysProIleGlyAlaTrpProLeuLysAsp<-><->SerAlaIleGluLysThrIl : 45 |||||||||||||||||||||||||| ... !!! !.!!|||::!! !:! euLysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLe 274412 : TGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCT : 274468 46 : eAlaPheIleGlnValAlaAlaCysSerThrThrIleAlaIleValThrValProCys : 64 !:!! !::: ::: ||| ! ! !||| ! !..!..!:!!||| !! uSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSer 274469 : TTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGC : 274525 65 : IleLeuTyrValLeuLeuGluAspAsnSerPheLysMetLysLeuSerAlaLeuGlyP : 84 |||!!!:!!:!!:!!|||! !|||.!.|||.!! ! :!!||||||!.! !||||||| IlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyP 274526 : ATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTC : 274585 85 : roLeuLeuHisArgIleIleGlySerIleSerTyrUnkThrLeuLeuLysArgSerLy : 103 ||||| !||| !!.!!||||||.!!|||!:!|||...||||||||| !|||||||| roLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLy 274586 : CTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAA : 274642 104 : sAspIleArgAspCysIleGlnHisMetGlnAlaAspTrpArgLeuValArgArgVal : 122 |!!:||||||! !|||:!::!!|||||||||.!!|||||||||:!!|||! !||| ! sGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgPro 274643 : AGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCG : 274699 123 : GlnAspArgGluValMetLeuGlnTyrAlaLysPheGlyArgPheIleAlaGlyIleG : 142 :!!|||!:!:!!|||||||||:!! !!||||||.!!||||||!:!:!!||| !.!! GluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheC 274700 : GAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCT : 274759 143 : lyAlaIleIleMetUnkGlyGlyGlnLeuLeuPheGlyThrThrArgAlaIleLysTh : 161 !!||| .!!||| !!||| |||! !!:! !!..!! !! !|||.!!! ! ysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMe 274760 : GTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTAT : 274816 162 : rValLysIleThrValGlyAsnGlnThrPheThrThrHisProMetThrCysProAla : 180 ! !! :!! !|||||||||:!!||| |||..!||| !:!! !!||| !||| tGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAla 274817 : GCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCT : 274873 181 : TyrSerArgIleIleAspThrArgPheSerProMetAsnGluIleMetLeuValIleG : 200 |||!.!!:!|||:!!! ..! ! ||||||! !|||||||||:!:|||!.! | TyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerG 274874 : TACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGC : 274933 201 : lnPheValSerAlaPheAlaValSerSerAlaIleValSerValCysSerLeuAlaAl : 219 |||||||||||!.!||| !|||!:!|||::! |||.!!!.!! !||||||||||| lnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAl 274934 : AATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGC : 274990 220 : aValPheAlaMetHisAlaCysGlyGlnLeuAsnValLeuTyrAlaTrpLeuAsnAsp : 238 |||||||||| ||||||! !|||||||||!:!|||||| !|||:!!!.!!!: aValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGlu 274991 : CGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAG : 275047 239 : LeuIleGluGluTyrGluMetGlyAspArgSerVal<->AspGlnLysLeuAlaIleI : 257 !!!:!:.!..!.! !..! :::::::::||| ...:!!:!!!.!:!:: PheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValV 275048 : TTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGG : 275107 258 : leValGluHisHisLeuArgValLeu{Se} >>>> Target Intron 1 >>>> : 266 !!||||||||||||||||||||||||{||} 74 bp alValGluHisHisLeuArgValLeu{Se}++ + 275108 : TTGTCGAACATCATCTGAGGGTACTC{AG}gt.........................a : 275208 267 : {r}LeuValThrCysMetGluSerIleIleHisLysValCysPheValMetLeuAla : 284 {|}!!!:!!.!! !!!!:|||..!:!:!!::!!::!:!!||||||:!! ||| ! +{r}PheIleAlaArgIleGluAspValMetAsnArgIleCysPheMetGluLeuPhe 275209 : g{T}TTCATAGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAATTGTTC : 275262 285 : GlySerThrLeuAsnMetCysLeuLeuGlyTyrTyrValIle : 298 !!!!||||||:!!||||||:!!||||||||||||:!!:!! LysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleLeu 275263 : AAGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTCTC : 275306 vulgar: CbirOr24PSE 8 298 . KQ414889.1 274353 275306 + 635 M 30 90 G 0 6 M 212 636 G 0 3 M 15 45 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274354 275306 635 + . gene_id 4 ; sequence CbirOr24PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274354 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274354 275135 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274354 275306 635 + . alignment_id 4 ; Query CbirOr24PSE ; Align 274354 9 90 ; Align 274450 39 636 ; Align 275089 251 45 ; Align 275211 267 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 633 Query range: 12 -> 395 Target range: 208194 -> 212084 13 : TyrGluAsnValAsnAspTyrSerLeuGlnIleAsnArgTrpCysLeuLysProIleG : 32 |||:!!|||! ! ..!!:!!:!:!!!:::!:||| !||| |||||| !|||| TyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuLysIleIleG 208195 : TACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGAAGATAATCG : 208252 33 : lyAlaTrpPro<-><->LeuLysAspSerAlaIleGluLysThrIleAlaPheIleGl : 49 ||:!!|||||| :!! ! !||| !:!!|||!!.!:! !.!!:!! lySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHisIleLeuLe 208253 : GCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCATATTCTCTT : 208309 50 : nValAlaAlaCysSerThrThrIleAlaIleValThrValProCysIleLeuTyrVal : 68 ! !!.! ! !! ! ! !:!!!.!.!!:!!..!:!!||| ! !:!!!:!!.! uAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGlyMetPheAla 208310 : AAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATGTTCGCG : 208366 69 : LeuLeuGluAspAsnSerPheLysMetLysLeuSerAlaLeuGlyProLeuLeuHisA : 88 :!!|||! !! !.!...!||| ! :!!|||!.! !! !.!! !!||| ! ! IleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaLeuSerPheP 208367 : ATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTCTGAGCTTCT : 208426 89 : rgIleIleGlySerIleSerTyrUnkThrLeuLeuLysArgSerLysAspIleArgAs : 107 !!!:!!:!.!! !! !.!||| ! !:!! ! |||..! ||||||||| ! heMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAspIleArgLy 208427 : TCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGACATACGGAA : 208483 108 : pCysIleGlnHisMetGlnAlaAspTrpArgLeuValArgArgValGlnAspArgGlu : 126 |||:!!:!!:!!:!::!!|||||||||||| !|||..!!.!! !:!!||||||:!! sCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGluAspArgLys 208484 : GTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAGGACAGGAAG : 208540 127 : ValMetLeuGlnTyrAlaLysPheGlyArgPheIleAlaGlyIleGlyAlaIleIleM : 146 :!!||||||.!. !!|||!..|||!.!||| :!: !! !||| !!!.! !.!!| IleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysGlyAlaPheM 208541 : ATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCGGAGCTTTCA : 208600 147 : etUnkGlyGlyGlnLeuLeuPheGlyThrThrArgAlaIleLysThrValLysIleTh : 165 || |||||| :::...::: !.!! ! !!:!!! !! !|||:!!.. etTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAspLysValVa 208601 : TGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGACAAGGTCGT : 208657 166 : rValGlyAsnGlnThrPheThrThrHisProMetThrCysProAlaTyrSerArgIle : 184 !! !! !..! !.!!!.||| !... !:!!..!! !|||!.! !!.! !||| lGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValProLysPheIle 208658 : CGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCTAAGTTCATT : 208714 185 : IleAspThrArgPheSerProMetAsnGluIleMetLeuValIleGlnPheValSerA : 204 :!:|||..!|||!:!||||||:!!|||||||||.!.! !..!:!!|||!!.:!!|||! LeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnLeuLeuSerG 208715 : CTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAATTGTTGTCGG : 208774 205 : laPheAlaValSerSerAlaIleValSerValCysSerLeuAlaAlaValPheAlaMe : 223 .!|||!.!!.! !!:! !! |||.!!!.!|||.!!|||||||||:!!.!!||||| lyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLeuLeuAlaMe 208775 : GTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCTGCTCGCGAT : 208831 224 : tHisAlaCysGlyGlnLeuAsnValLeuTyrAlaTrpLeuAsnAspLeuIleGluGlu : 242 |||||||||||||||||||.!.:!!||| :!!|||:!!.!. ! |||:!!!!:! ! tHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeuValAspGly 208832 : GCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTGGTCGATGGA : 208888 243 : TyrGluMetGlyAspArgSerValAspGlnLysLeuAlaIleIleValGluHisHisL : 262 ||| ! !!!:!:!!:!:!!||||||!:!||||||! !|||||||||!!.|||: ArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleValGluGlnHisV 208889 : CGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCGTGGAGCAGCATG : 208948 263 : euArgValLeu{Se} >>>> Target Intron 1 >>>> {r}LeuValThrCy : 270 !!||||||:!!{!:} 1536 bp {!}!!!:!!.!! alArgValIle{As}++ ++{n}PheIleAlaLe 208949 : TTCGAGTGATC{AA}gt.........................ag{T}TTTATAGCTCT : 210508 271 : sMetGluSerIleIleHisLysValCysPheValMetLeuAlaGlySerThrLeuAsn : 289 ! |||!:!:!!:!:|||:!!:!!! !!.:!! :!!!.!|||!!!||||||||| uThrGluAsnLeuLeuHisGluIleSerLeuIleGluMetValGlyCysThrLeuAsn 210509 : GACAGAGAACCTCCTGCACGAGATATCATTGATAGAAATGGTGGGGTGCACTCTGAAC : 210565 290 : MetCysLeuLeuGlyTyrTyrVal{Il} >>>> Target Intron 2 >>>> { : 298 ||||||!!!||||||||||||..!{||} 96 bp { MetCysPheLeuGlyTyrTyrThr{Il}+- ++{ 210566 : ATGTGTTTCCTTGGCTATTACACG{AT}ga.........................ag{ : 210690 299 : e}MetCysProIleLeuHisTyrIleTyrLeuValSerPheAsnIlePheIlePheCy : 317 |}! !! !:!! !:!! !! !|||!!!|||||||||||||||||||| e}SerLeuThrTyrIleValLeuLeuThrSerValThrPheAsnIlePheIlePheCy 210691 : C}AGTCTGACGTACATAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTG : 210745 318 : sTyrIleGlyGluIleLeuThrAspGln >>>> Target Intron 3 >>>> S : 327 |||||||||||||:!:|||.!!!!:||| 999 bp ! sTyrIleGlyGluValLeuAlaGluGln++ ++T 210746 : TTACATCGGTGAAGTGTTGGCTGAACAggt.........................agA : 211774 328 : erLysAsnIleGluAsnMetValTyrMetThrAspTrpTyrUnkLeuProHisLysTh : 346 !! !!!.:!!! !.!.! ! !||||||! !||||||||| :!!||| |||! hrValLysValGlyGluLysSerTyrMetIleAspTrpTyrArgMetProGlyLysLy 211775 : CAGTAAAAGTTGGAGAAAAGTCTTACATGATCGACTGGTATCGAATGCCAGGAAAGAA : 211831 347 : rAlaLeuCysPheIleLeuIleIleMetArgSerAsnTyrThrIleLysMetThrAla : 365 !!.!||| ! ! !|||!!:||| ! !|||:!!! |||! !|||!!:|||||| sGlyLeuValValProLeuMetIleSerMetSerHisSerThrThrLysIleThrAla 211832 : AGGTTTGGTCGTACCCTTGATGATCTCCATGTCACATTCGACCACCAAAATCACCGCT : 211888 366 : GlyAsnLeuValTyrLeuLeuIleAlaThrPheGlyAsp >>>> Target Intro : 379 |||||||||:!! !|||! !|||::!!:!||||||||| 104 bp GlyAsnLeuIleValLeuSerIleSerSerPheGlyAsp++ 211889 : GGCAATCTCATCGTTCTTTCAATCAGTAGTTTCGGTGACgt................. : 211932 380 : n 4 >>>> MetIleLysThrSerMetAlaTyrLeuAsnLeuLeuArgThrMetThr : 394 :!:||||||||||||:!:.!!|||||||||:!!|||||||||.!.||| ++ValIleLysThrSerValThrTyrLeuAsnMetLeuArgThrPheThr 211933 : ........agGTTATCAAGACTTCGGTAACATACTTGAACATGCTACGAACATTCACA : 212079 395 : Thr : 395 ||| Thr 212080 : ACC : 212084 vulgar: CbirOr24PSE 12 395 . KQ414889.1 208194 212084 + 633 M 23 69 G 0 6 M 230 690 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 31 93 S 0 2 5 0 2 I 0 92 3 0 2 S 1 1 M 28 84 5 0 2 I 0 995 3 0 2 M 52 156 5 0 2 I 0 100 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208195 212084 633 + . gene_id 5 ; sequence CbirOr24PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208195 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208195 208961 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210593 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210593 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210594 210595 . + . intron_id 2 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 210594 210689 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210688 210689 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210690 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210690 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211929 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 211930 211931 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 211930 212033 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 212032 212033 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 212034 212084 . + . KQ414889.1 exonerate:protein2genome:local exon 212034 212084 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208195 212084 633 + . alignment_id 5 ; Query CbirOr24PSE ; Align 208195 13 69 ; Align 208270 36 690 ; Align 210499 267 93 ; Align 210691 299 84 ; Align 211774 327 156 ; Align 212034 379 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 619 Query range: 4 -> 379 Target range: 212830 -> 215022 5 : LysCysLysProValAspIleAlaTyrGluAsnValAsnAspTyrSerLeuGlnIleA : 24 |||! :!! !! !||| !.!!||||||!!. ::: |||::: ! | LysLeuGlnValGluAspCysThrTyrGluLysArgValAsnLeuSerIleProTrpA 212831 : AAATTGCAGGTCGAAGACTGTACCTACGAGAAACGtgtaaatttaagtatacCGTGGA : 212888 25 : snArgTrpCysLeuLysProIleGlyAlaTrpProLeuLysAsp<-><->SerAlaIl : 41 |||||||| !|||||||||! ||| !|||||| !|||..! ||| !!|| snArgTrpLeuLeuLysProThrGlyLeuTrpProAspLysSerTyrValSerProIl 212889 : ATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGAT : 212945 42 : eGluLysThrIleAlaPheIleGlnValAlaAlaCysSerThrThrIleAlaIleVal : 60 |||||||!.!|||||| :!: !.!!!.!|||! ! ! !|||!.! !:!! eGluLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLeu 212946 : CGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTT : 213002 61 : ThrValProCysIleLeuTyrValLeuLeuGluAspAsnSerPheLysMetLysLeuS : 80 ..!:!!||||||! !|||||||||!!!|||!!:! ...:::... ::::!!. ValIleProCysSerLeuTyrValPheLeuAspValGluAsnIlePheLysGluIleG 213003 : GTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaagagaTCG : 213062 81 : erAlaLeuGlyProLeuLeuHisArgIleIleGlySerIleSerTyrUnkThrLeuLe : 99 .! !!!!||| !!!! ! ! !!:!: !!.! ! !.!||| :!!|||:! luLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIl 213063 : AATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGAT : 213119 100 : uLysArgSerLysAspIleArgAspCysIleGlnHisMetGlnAlaAspTrpArgLeu : 118 ! !.!.!! ! ||||||||| |||:!!:!!||||||:!! !||||||!:! ! eLeuHisGlyAspAspIleArgThrCysValGluHisMetLysTyrAspTrpLysAsn 213120 : ACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAAT : 213176 119 : ValArgArgValGlnAspArgGluValMetLeuGlnTyrAlaLysPheGlyArgPheI : 138 :!!! !!.!! !:!!|||!:!|||:!!||| ! ! !!|||!..||||||!:! | IleThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgI 213177 : ATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGA : 213236 139 : leAlaGlyIleGlyAlaIleIleMetUnkGlyGlyGlnLeuLeuPheGlyThrThrAr : 157 ||!.! !||| !!|||.!!.!!||| !||| !!!!!:! ! !..! leValThrIleCysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuValVa 213237 : TAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGT : 213293 158 : gAlaIleLysThrValLysIleThrValGlyAsnGlnThrPheThrThrHisProMet : 176 ! !!|||!...!!! !|||!!:..!!.!! !:!!! !.! ! ||| !...! !||| lProIleSerAlaAspLysMetValAlaGluAspLeuAsnValThrPheArgGlnMet 213294 : ACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATG : 213350 177 : ThrCysProAlaTyrSerArgIleIleAspThrArgPheSerProMetAsnGluIleM : 196 ..! !|||!.!! !!! !|||:!!|||..!|||!:!||||||:!!|||||||||. ValValProValSerArgPheIleValAspValArgTyrSerProValAsnGluIleP 213351 : GTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATAT : 213410 197 : etLeuValIleGlnPheValSerAlaPheAlaValSerSerAlaIleValSerValCy : 215 !.!!!:!!||||||.!!:!!:!!!.! ! !:!! !:!! ! ||| !!.!|| hePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAlaCy 213411 : TCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTG : 213467 216 : sSerLeuAlaAlaValPheAlaMetHisAlaCysGlyGlnLeuAsnValLeuTyrAla : 234 ||||||||||||||||||||||:!:|||||||||||||||:!!..!:!!||| ::! sSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSer 213468 : TAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGC : 213524 235 : TrpLeuAsnAspLeuIleGluGluTyrGluMetGlyAspArgSerValAspGlnLysL : 254 ||||||.!. !!||||||!!:! ||| !..!!:!!:!||||||.!.!:!: TrpLeuGluHisLeuIleAspGlyArgGluAspMetSerLysAsnValAspAspArgI 213525 : TGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGCAAGAATGTGGACGACAGAA : 213584 255 : euAlaIleIleValGluHisHisLeuArgValLeu{Se} >>>> Target Intro : 266 !!|||:!!||||||.!.!!.|||:!!|||:!!|||{!.} 840 bp leAlaValIleValAsnGlnHisValArgIleLeu{Ly}++ 213585 : TCGCGGTCATCGTGAACCAGCATGTGCGGATACTG{AA}gt................. : 213624 267 : n 1 >>>> {r}LeuValThrCysMetGluSerIleIleHisLysValCysPheVal : 281 {!}!!!:!! ! !:!!|||!.! !:!!!..:!!|||! !|||!.! ++{s}PheLeuGluLeuValGluLysAlaLeuArgGlnValSerPheAla 213625 : ........ag{A}TTCTTAGAGCTCGTGGAGAAAGCACTTCGGCAAGTATCTTTCGCT : 214505 282 : MetLeuAlaGlySerThrLeuAsnMetCysLeuLeuGlyTyrTyrValIle{M} >> : 299 ||| !! !!!!|||:!!|||:!:||||||:!!|||||||||:!!|||{!} GluLeuLeuValCysThrValAsnLeuCysLeuValGlyTyrTyrIleIle{I}-- 214506 : GAATTATTAGTATGCACGGTGAATCTCTGTCTCGTTGGATATTACATAATA{A}cg.. : 214562 300 : >> Target Intron 2 >>>> {et}CysProIleLeuHisTyrIleTyrLeuVa : 309 101 bp {!:} ! !:!::!! ||||||! !||| ++{le}ThrTyrValValLeuTyrIleSerLeu-- 214563 : .......................ag{TA}ACTTACGTGGTGTTGTATATCTCTCtc-- : 214690 310 : lSerPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrAspGln >>>> : 327 :::|||||||||||||||||||||||||||||||||:!!:!!:!!!!:||| -ThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValSerGluGln++ 214691 : -actttcaatattttcatattttgttaCATAGGCGAGCTTGTGTCTGAACAGgt.... : 214743 328 : Target Intron 3 >>>> SerLysAsnIleGluAsnMetValTyrMetThrAs : 338 123 bp !!!|||!!.:!!! !.!.:!: !||||||! !!! ++CysLysLysValGlyGluValSerTyrMetIleGl 214744 : .....................agTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGA : 214897 339 : pTrpTyrUnkLeuProHisLysThrAlaLeuCysPheIleLeuIleIleMetArgSer : 357 :|||||| |||||| !!!.! ! !||||||! !|||||||||!!: ! !||| uTrpTyrArgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSer 214898 : ATGGTACCGATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCC : 214954 358 : AsnTyrThrIleLysMetThrAlaGlyAsnLeuValTyrLeuLeuIleAlaThrPheG : 377 |||! :!!:!!|||.!.||||||||||||:!!||| ! |||! !|||::!||||||. AsnSerSerValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheS 214955 : AATTCATCCGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCA : 215014 378 : lyAspMet : 379 !!..!:!: erSerVal 215015 : GCAGTGTA : 215022 vulgar: CbirOr24PSE 4 379 . KQ414889.1 212830 215022 + 619 M 34 102 G 0 6 M 227 681 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 M 32 96 S 0 1 5 0 2 I 0 97 3 0 2 S 1 2 M 9 27 G 1 0 M 17 51 5 0 2 I 0 119 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212831 215022 619 + . gene_id 6 ; sequence CbirOr24PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212831 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 212831 213621 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214559 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214559 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214560 214561 . + . intron_id 2 ; splice_site "CG" KQ414889.1 exonerate:protein2genome:local intron 214560 214660 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214659 214660 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214661 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214661 214740 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212831 215022 619 + . alignment_id 6 ; Query CbirOr24PSE ; Align 212831 5 102 ; Align 212939 39 681 ; Align 214463 267 96 ; Align 214663 300 27 ; Align 214690 310 51 ; Align 214864 327 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 579 Query range: 8 -> 272 Target range: 266607 -> 267408 9 : ValAspIleAlaTyrGluAsnValAsnAspTyrSerLeuGlnIleAsnArgTrpCysL : 28 :!!!!: ! .!.!:!:!!!:!|||||||||||||||:!:|||||||||! !| IleGluAlaAsnLeuAsnSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheL 266608 : ATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCCTGCAATTGAATCGATGGTTCC : 266665 29 : euLysProIleGlyAlaTrpPro<-><->LeuLysAspSerAlaIleGluLysThrIl : 45 ||||||||||||||||||||||| ! ! ||| !:!!|||::!! !:! euLysProIleGlyAlaTrpProProLeuSerLeuThrSerLysLeuGluArgIleVa 266666 : TGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCACATCTAAACTCGAACGAATCGT : 266722 46 : eAlaPheIleGlnValAlaAlaCysSerThrThrIleAlaIleValThrValProCys : 64 !:!!!:! ! !:!!!.! !|||! ! !:!!||| !.!!..!..!:!!|||||| lSerTyrAlaLeuIleValIleCysTyrCysSerIleLeuPheThrValIleProCys 266723 : TTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATACTGTTCACCGTAATCCCTTGC : 266779 65 : IleLeuTyrValLeuLeuGluAspAsnSerPheLysMetLysLeuSerAlaLeuGlyP : 84 :!:!!!:!!:!!:!!|||||||||.!.|||.!!:::! !|||:!!!.!!.!!!!|||| LeuPheHisLeuValLeuGluAspGluSerIleArgThrLysValLysValPheGlyP 266780 : TTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTACGAAAGTGAAGGTGTTCGGTC : 266839 85 : roLeuLeuHisArgIleIleGlySerIleSerTyrUnkThrLeuLeuLysArgSerLy : 103 ||||| !||| !!.!!:!!|||.!!|||!:!|||...||||||||| !|||||||| roLeuSerHisTrpPheValGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLy 266840 : CTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACACCACACTGTTGCTACGCAGCAA : 266896 104 : sAspIleArgAspCysIleGlnHisMetGlnAlaAspTrpArgLeuValArgArgVal : 122 |!!:||||||! !|||:!!:!!|||||||||.!!|||||||||:!!|||! !||| ! sGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgPro 266897 : AGAGATACGCGGTTGCGTAGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCG : 266953 123 : GlnAspArgGluValMetLeuGlnTyrAlaLysPheGlyArgPheIleAlaGlyIleG : 142 :!!|||!:!:!!|||||||||:!! !!|||!:!.!!||||||!:!|||||| !.!! GluAspLysGlnValMetLeuLysAsnAlaArgIleGlyArgTyrIleAlaIlePheC 266954 : GAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCGGTCGTTACATTGCTATATTCT : 267013 143 : lyAlaIleIleMetUnkGlyGlyGlnLeuLeuPheGlyThrThrArgAlaIleLysTh : 161 !!||| .!!||| !!||| ||| !!:! !!..!! !! !|||.!!! ! ysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCysValIleThrAlaPheThrMe 267014 : GCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGTGATAACGGCGTTCACTAT : 267070 162 : rValLysIleThrValGlyAsnGlnThrPheThrThrHisProMetThrCysProAla : 180 ! !! :!: !|||||||||:!!||| ! !..!|||! !:!! !!||| !!!.! tGlnThrValGluValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaVal 267071 : GCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTACATCTGTTGCCCTGTGCAGTT : 267127 181 : TyrSerArgIleIleAspThrArgPheSerProMetAsnGluIleMetLeuValIleG : 200 |||!.!!:!!!:|||! ..! ! !||||||! !|||||||||:!:|||||| !| TyrLysLysMetIleAlaValAspThrSerProThrAsnGluIleValLeuValSerG 267128 : TACAAGAAGATGATCGCAGTTGATACCAGCCCGACGAACGAGATTGTCCTTGTTTCAC : 267187 201 : lnPheValSerAlaPheAlaValSerSerAlaIleValSerValCysSerLeuAlaAl : 219 |||||||||||!.!||| !|||!:!|||::!:!!|||.!!!.!! !||||||||||| lnPheValSerGlyPheIleValAsnSerSerValValGlyAlaPheSerLeuAlaAl 267188 : AGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGC : 267244 220 : aValPheAlaMetHisAlaCysGlyGlnLeuAsnValLeuTyrAlaTrpLeuAsnAsp : 238 |||||||||| ||||||||||||||||||!:!|||||| !|||:!!!!.!!: aValPheAlaAlaHisAlaCysGlyGlnLeuSerValLeuMetMetTrpIleLysGlu 267245 : CGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTGATGATGTGGATCAAGGAG : 267301 239 : LeuIleGluGluTyrGluMetGlyAspArgSerVal<->AspGlnLysLeuAlaIleI : 257 !!!:!:.!...!! !..! .!!:!!!:!!:!||| !.!.|||:!!!.!:!:: PheValAsnArgSerArgAspSerAsnLysAsnValCysPheAspLysIleGlyValV 267302 : TTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTTGCTTCGATAAGATTGGCGTGG : 267361 258 : leValGluHisHisLeuArgValLeuSerLeuValThrCysMetGlu : 272 !!||||||||||||||||||||||||!!!! !! ! !|||:!::!! alValGluHisHisLeuArgValLeuArg***GlyLeuCysLeuLys 267362 : TCGTTGAACATCATCTGAGAGTTTTGAGGTAAGGATTGTGTCTCAAG : 267408 vulgar: CbirOr24PSE 8 272 . KQ414889.1 266607 267408 + 579 M 27 81 G 0 6 M 215 645 G 0 3 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266608 267408 579 + . gene_id 7 ; sequence CbirOr24PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266608 267408 . + . KQ414889.1 exonerate:protein2genome:local exon 266608 267408 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266608 267408 579 + . alignment_id 7 ; Query CbirOr24PSE ; Align 266608 9 81 ; Align 266695 36 645 ; Align 267343 251 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 545 Query range: 18 -> 395 Target range: 284523 -> 287341 19 : TyrSerLeuGlnIleAsnArgTrpCysLeuLysProIleGlyAlaTrpProLeuLys< : 38 ||||||:!!|||!!:|||||||||! !|||||||||||||||!.!|||||||||!.. TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 39 : -><->AspSerAlaIleGluLysThrIleAlaPheIleGlnValAlaAlaCysSerTh : 55 ! !!!.!!:!:||||||! !! !:!! ! :!!! !.! ! ! !!!!! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 56 : rThrIleAlaIleValThrValProCysIleLeuTyrValLeuLeuGlu<->AspAsn : 73 ! !|||!.!.!!:!! !||||||||| !|||! !..!:!!|||!!: !..! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 74 : SerPheLysMetLysLeuSerAlaLeuGlyProLeuLeuHisArgIleIleGlySerI : 93 ..!.!! ! ! !|||:!!!.! !:!!||||||||| ! ! !!!!:!!:!.!:!!| AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 94 : leSerTyrUnkThrLeuLeuLysArgSerLysAspIleArgAspCysIleGlnHisMe : 112 ||!.!||| ! !|||:!!..!|||.!! ! ||| !!.!.|||:!::!! !!!! leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 113 : tGlnAlaAspTrpArgLeuVal<-><-><->ArgArgValGlnAspArgGluValMet : 128 :!::||||||||| !|||..! !! ::: ::::::||||||:::||| eArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMet 284813 : TCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTG : 284869 129 : LeuGlnTyrAlaLysPheGlyArgPheIleAlaGlyIleGlyAlaIleIleMetUnkG : 148 !.!. !|||!:!.!!||||||! !:!:||| !.!! !!||| !.!!||| . ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrS 284870 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATT : 284929 149 : lyGlyGlnLeuLeuPheGlyThrThrArgAlaIleLysThrValLysIleThrValGl : 167 .!||| !!!!!!!!:! !|||..!! ! !!:!: ||||||:::! !:!! erGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIl 284930 : CCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCAT : 284986 168 : yAsnGlnThrPheThrThrHisProMetThrCysProAlaTyrSerArgIleIleAsp : 186 !:!!.!. ! |||..!... !!....!!! !||| !||| !! !!:!!:!!||| eAspAsnGlu---ThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAsp 284987 : CGACAACGAG---ACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGAT : 285040 187 : ThrArgPheSerProMetAsnGluIleMetLeuValIleGlnPheValSerAlaPheA : 206 !!||| !|||||| ! !||||||:!!! ! !!!!:|||! !:!!:!!||||||! ProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheV 285041 : CCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCG : 285100 207 : laValSerSerAlaIleValSerValCysSerLeuAlaAlaValPheAlaMetHisAl : 225 .!:!!! !|||!.!! !|||.!!!.!|||||||||||||||||||||!.!||||||!. alIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisVa 285101 : TTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGT : 285157 226 : aCysGlyGlnLeuAsnValLeuTyrAlaTrpLeuAsnAspLeuIleGlu<-><->Glu : 242 !|||||||||!!!!..:!!||| .!! !|||:!! ! |||:!!!!: :!! lCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLys 285158 : CTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAA : 285214 243 : TyrGluMetGlyAspArgSerValAspGlnLysLeuAlaIleIleValGluHisHisL : 262 ..!! !||| !!!!!! !!!:|||::!|||!.! !|||:!!|||||||||| GlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisL 285215 : GGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATC : 285274 263 : euArgValLeu{Se} >>>> Target Intron 1 >>>> {r}LeuValThrCy : 270 ||!:!:!!|||{.!} 1411 bp {!}!!!:!!:!! euLysIleLeu{Gl}++ ++{y}PheIleSerGl 285275 : TGAAGATACTG{GG}gt.........................ag{T}TTTATATCGCA : 286709 271 : sMetGluSerIleIleHisLysValCysPheValMetLeuAlaGlySerThrLeuAsn : 289 !!:|||.!!:!!:!!:!!:!!:!!||||||||| !:!! !|||!!!||||||||| nIleGluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsn 286710 : AATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAAC : 286766 290 : MetCysLeuLeuGlyTyrTyrValIleMetCysProIleLeuHisTyrIleTyrLeuV : 309 !!:|||!!!||||||||||||:!!:!:! ! !! ! !! !:!! ! !: IleCysPheLeuGlyTyrTyrLeuLeuThrValThrGluThrThrCysValIleThrI 286767 : ATATGCTTTTTGGGATATTATTTACTGACGGTAACAGAGACGACTTGTGTTATTACCA : 286826 310 : al{Se} >>>> Target Intron 2 >>>> {r}PheAsnIlePheIlePheCy : 317 !!{ } 110 bp {!}||||||:!!||||||.!!|| le{Le}++ +-{u}PheAsnValPheIleLeuCy 286827 : TA{CT}gt.........................ac{G}TTCAACGTTTTCATACTCTG : 286960 318 : sTyrIleGlyGluIleLeuThrAspGln >>>> Target Intron 3 >>>> S : 327 |||||||||||||||||||:!!!!:||| 74 bp sTyrIleGlyGluIleLeuSerGluGln++ ++C 286961 : TTACATCGGTGAAATTCTCTCCGAACaggt.........................agt : 287064 328 : erLysAsnIleGluAsnMetValTyrMetThrAspTrpTyrUnkLeuProHisLysTh : 346 !! !!!.:!!! ..!||||||! !||||||||| |||||| ||||| ysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysTh 287065 : GCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAAC : 287121 347 : rAlaLeuCysPheIleLeuIleIleMetArgSerAsnTyrThrIleLysMetThrAla : 365 ||||! ! !!!!.|||||||||.!! !||||||! !:!!||||||:!:|||||| rAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAla 287122 : AGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCT : 287178 366 : GlyAsnLeuValTyrLeuLeuIleAlaThrPheGlyAsp >>>> Target Intro : 379 |||!!.:!!:!! !!|||! !:!!::!!:!||| !!..! 71 bp GlyLysIleIleAspLeuSerLeuSerSerPheCysSer++ 287179 : GGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt................. : 287222 380 : n 4 >>>> MetIleLysThrSerMetAlaTyrLeuAsnLeuLeuArgThrMetThr : 394 :!!:!:|||:!!:!!.!.|||||||||!:!||||||||||||:!:||| ++ValLeuLysSerAlaPheAlaTyrLeuSerLeuLeuArgThrLeuThr 287223 : ........agGTGTTGAAATCGGCATTCGCATATCTGAGCTTATTACGTACGCTAACC : 287336 395 : Thr : 395 ||| Thr 287337 : ACA : 287341 vulgar: CbirOr24PSE 18 395 . KQ414889.1 284523 287341 + 545 M 19 57 G 0 6 M 34 102 G 0 3 M 48 144 G 0 9 M 51 153 G 1 0 M 70 210 G 0 6 M 24 72 S 0 2 5 0 2 I 0 1407 3 0 2 S 1 1 M 43 129 S 0 2 5 0 2 I 0 106 3 0 2 S 1 1 M 16 48 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 287341 545 + . gene_id 8 ; sequence CbirOr24PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284524 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 285287 . + . insertions 24 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286698 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286830 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286830 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286831 286832 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286831 286940 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286939 286940 . + . intron_id 1 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 286941 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286941 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287220 287221 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 287220 287290 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287289 287290 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 287291 287341 . + . KQ414889.1 exonerate:protein2genome:local exon 287291 287341 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284524 287341 545 + . alignment_id 8 ; Query CbirOr24PSE ; Align 284524 19 57 ; Align 284587 38 102 ; Align 284692 72 144 ; Align 284845 120 153 ; Align 284998 172 210 ; Align 285214 242 72 ; Align 286700 267 129 ; Align 286942 311 48 ; Align 287064 327 156 ; Align 287291 379 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 527 Query range: 11 -> 265 Target range: 262828 -> 263599 12 : AlaTyrGluAsnValAsnAspTyrSerLeuGlnIleAsnArgTrpCysLeuLysProI : 31 ::!!:!! !:!:!!!:!||||||||||||||||||||||||||| |||||||||| SerPheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProI 262829 : AGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGA : 262886 32 : leGlyAlaTrpProLeuLysAsp<-><->SerAlaIleGluLysThrIleAlaPheIl : 48 |||||||||||||||||...! ! ||| !!!:|||::!! !||| !|||:! leGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPheLe 262887 : TCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCT : 262943 49 : eGlnValAlaAlaCysSerThrThrIleAlaIleValThrValProCysIleLeuTyr : 67 ! !:!!!.!!.!|||! ! ! !||| ! !..!..!:!!|||! !||||||:!! uLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeuHis 262944 : CTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCAT : 263000 68 : ValLeuLeuGluAspAsnSerPheLysMetLysLeuSerAlaLeuGlyProLeuLeuH : 87 :!!:!!||||||! !.!.!:!||| ! |||||||||..!!.!|||||||||||| !! IleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyG 263001 : ATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTC : 263060 88 : isArgIleIleGlySerIleSerTyrUnkThrLeuLeuLysArgSerLysAspIleAr : 106 !. !!.!!:!!|||! !|||!:!|||... !|||||| !.!||||||||||||!: lnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGl 263061 : AGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACA : 263117 107 : gAspCysIleGlnHisMetGlnAlaAspTrpArgLeuValArgArgValGlnAspArg : 125 !! !|||:!:||||||:!!|||! !|||||| !!:!!|||! !|||:!!:!!|||!:! nGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAspGln 263118 : AGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAA : 263174 126 : GluValMetLeuGlnTyrAlaLysPheGlyArgPheIleAlaGlyIleGlyAlaIleI : 145 ...:!!||||||:!! !!||||||!:!||||||!:!:!:|||!.! ! !!||||||. ArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIleP 263175 : CGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCT : 263234 146 : leMetUnkGlyGlyGlnLeuLeuPheGlyThrThrArgAlaIleLysThrValLysIl : 164 !!||| !.!! :!!! ! !! !..!! !|||.!!! ||| ! !|| heMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnValIl 263235 : TCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGAT : 263291 165 : eThrValGlyAsnGlnThrPheThrThrHisProMetThrCysProAlaTyrSerArg : 183 | !! !||||||:!!||| ! ! !!.! !:!: !!||||||!.!|||!.!..! eGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLysGlu 263292 : CGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAG : 263348 184 : IleIleAspThrArgPheSerProMetAsnGluIleMetLeuValIleGlnPheValS : 203 |||||| ..! ! !:!|||! !|||||||||.!.|||!.!! ||||||:!!| IleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuS 263349 : ATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGT : 263408 204 : erAlaPheAlaValSerSerAlaIleValSerValCysSerLeuAlaAlaValPheAl : 222 ||!.!||| !|||!!!:!!.!!! !|||.!!!.!! !.!!:!!.!!||||||||||| erGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAl 263409 : CGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGC : 263465 223 : aMetHisAlaCysGlyGlnLeuAsnValLeuTyrAlaTrpLeuAsnAspLeuIleGlu : 241 | ||||||||||||||||||||||||||| :!!|||:!!!..!!:!!!:!:.!. aGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAsn 263466 : CGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAAC : 263522 242 : GluTyrGluMetGlyAspArgSerVal<->AspGlnLysLeuAlaIleIleValGluH : 260 :!!! !..! ! !:!!!:!!:!:!! ! :!!:!!!.!:!:|||||||||| GlnSerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValGluH 263523 : CAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAAC : 263582 261 : isHisLeuArgValLeu : 265 ||||||||||||||||| isHisLeuArgValLeu 263583 : ATCATCTGAGAGTTCTG : 263599 vulgar: CbirOr24PSE 11 265 . KQ414889.1 262828 263599 + 527 M 27 81 G 0 6 M 212 636 G 0 3 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262829 263599 527 + . gene_id 9 ; sequence CbirOr24PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262829 263599 . + . KQ414889.1 exonerate:protein2genome:local exon 262829 263599 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262829 263599 527 + . alignment_id 9 ; Query CbirOr24PSE ; Align 262829 12 81 ; Align 262916 39 636 ; Align 263555 251 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 478 Query range: 8 -> 326 Target range: 217144 -> 219439 9 : ValAspIleAlaTyrGluAsnValAsnAspTyrSerLeuGlnIleAsnArgTrpCysL : 28 ..!||| !! ||||||... ::: |||:!!||| |||||||||! | ThrAspTyrGluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuL 217145 : ACCGACTACGAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGT : 217202 29 : euLysProIleGlyAlaTrpProLeuLysAspSerAlaIle<-><->GluLysThrIl : 45 ||||||||!!:||| !|||||| !..! !!!!.!!! ! ..!|||! !:! euLysProMetGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLe 217203 : TGAAACCGATGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCT : 217259 46 : eAlaPheIleGlnValAlaAlaCysSerThrThrIleAlaIleValThrValProCys : 64 ! ! :!: ! !||| !|||! ! ! !|||::!.!!:!! !||||||||| uTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCys 217260 : CTACAAACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGC : 217316 65 : IleLeuTyrValLeuLeuGluAspAsnSerPheLysMetLysLeuSerAlaLeuGlyP : 84 !:!!||||||!!!||||||! !.!...!.!! ! ||||||!.! !!!!|||| SerMetTyrValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyP 217317 : TCCATGTACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTC : 217376 85 : roLeuLeuHisArgIleIleGlySerIleSerTyrUnkThrLeuLeuLysArgSerLy : 103 |||||:!! ! !!:!:!!:!.!! !:!!!.!||| :!!|||:!! !.!!.! roLeuIlePheCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAl 217377 : CGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGC : 217433 104 : sAspIleArgAspCysIleGlnHisMetGlnAlaAspTrpArgLeuValArgArgVal : 122 !|||||||||!!:|||:!:::!...!!::!! !||||||||| !|||||| !!! ! aAspIleArgGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGlu 217434 : GGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAG : 217490 123 : GlnAspArgGluValMetLeuGlnTyrAlaLysPheGlyArgPheIleAlaGlyIleG : 142 :!!|||||||||!.!|||:!! ! !!|||!!.||||||||| :!:!.! !:!! LysAspArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuC 217491 : AAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCT : 217550 143 : lyAlaIleIleMetUnkGlyGlyGlnLeuLeuPheGlyThrThrArgAlaIleLysTh : 161 !!.!!.!!.!!||| .!!||| :::...::: !.!!! ! !!|||!.... ysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerVa 217551 : GTACCTTCTTCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGT : 217607 162 : rValLysIleThrValGlyAsnGlnThrPheThrThrHisProMetThrCysProAla : 180 !! !!:!||| ! !! !||| !!.!.!!||| ! !|||:!!..!! !||| ! lGlyArgIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPhe 217608 : GGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTT : 217664 181 : TyrSerArgIleIleAspThrArgPheSerProMetAsnGluIleMetLeuValIleG : 200 !.! !|||||||||||||||!:!!!!|||! !|||||||||:!!!!! !!:!!| ThrLysTyrIleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuG 217665 : ACGAAGTATATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTC : 217724 201 : lnPheValSerAlaPheAlaValSerSerAlaIleValSerValCysSerLeuAlaAl : 219 ||!!.:!!:!!!.! ! !:!! !.!! !! !:!!!.!|||||||||||||| lnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAl 217725 : AATTGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGC : 217781 220 : aValPheAlaMetHisAlaCysGlyGlnLeuAsnValLeuTyrAlaTrpLeuAsnAsp : 238 |!.!||||||:!:|||||||||||||||:!!.!.|||||| !||||||.!. !! aAlaPheAlaValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHis 217782 : AGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACAT : 217838 239 : LeuIleGluGluTyrGluMetGlyAspArgSerValAspGlnLysLeuAlaIleIleV : 258 ||||||!!:! ! ! !..! !!!!|||||| !:!:!!|||! !|||| LeuIleAspGlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleV 217839 : TTAATCGACGGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCG : 217898 259 : alGluHisHisLeuArgValLeuSerLeuValThrCysMetGlu{S} >>>> Targ : 273 ||...!!.|||:!!|||:!!|||!.!! !|||! !! !!:! {.} alSerGlnHisValArgIleLeuLysCysValArg***IleVal{G}++ 217899 : TCAGTCAACACGTTCGGATATTAAAGTGTGTAAGATAGATCGTT{G}gt......... : 217946 274 : et Intron 1 >>>> {er}<->IleIleHisLysValCysPheValMetLeuAla : 284 1226 bp {.!} ! !:!!!!.:!!:!!! !|||!.! !!! ! ++{lu}ArgThrLeuGlnGlnIleSerPheAlaGluPheLeu 217947 : ................ag{AG}AGAACCCTCCAGCAAATCTCTTTCGCTGAATTTCTA : 219205 285 : GlySerThrLeuAsnMetCysLeuLeuGlyTyrTyrValIleMetCysProIleLeuH : 304 |||!!!|||:!!:!!!!:||||||:!!|||||||||:!!|||:!! ! ! !!!! GlyCysThrMetAspIleCysLeuValGlyTyrTyrIleIleValValGln***PheT 219206 : GGATGCACCATGGACATATGTCTCGTTGGATATTACATTATCGTGGTACAATGATTCA : 219265 305 : isTyrIleTyrLeuVal{Se} >>>> Target Intron 2 >>>> {r}PheAs : 312 !|||!:!! ! {! } 106 bp {!}||||| hrIleIlePheSerSer{Ty}+- +-{r}PheAs 219266 : CGATCATTTTTTCCTcc{ta}ga.........................ac{t}ttcaa : 219395 313 : nIlePheIlePheCysTyrIleGlyGluIleLeuThrAspGln : 326 |||||||||||||||||||||||||||||||:!!.!!!!:||| nIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln 219396 : cattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: CbirOr24PSE 8 326 . KQ414889.1 217144 219439 + 478 M 33 99 G 0 6 M 231 693 S 0 1 5 0 2 I 0 1222 3 0 2 S 1 2 G 0 3 M 36 108 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217145 219439 478 + . gene_id 10 ; sequence CbirOr24PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217145 217943 . + . KQ414889.1 exonerate:protein2genome:local exon 217145 217943 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217944 217945 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217944 219169 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219168 219169 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219170 219284 . + . KQ414889.1 exonerate:protein2genome:local exon 219170 219284 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219285 219286 . + . intron_id 2 ; splice_site "ga" KQ414889.1 exonerate:protein2genome:local intron 219285 219390 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219389 219390 . + . intron_id 1 ; splice_site "ac" KQ414889.1 exonerate:protein2genome:local cds 219391 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219391 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217145 219439 478 + . alignment_id 10 ; Query CbirOr24PSE ; Align 217145 9 99 ; Align 217250 42 693 ; Align 219175 274 108 ; Align 219392 311 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 464 Query range: 18 -> 395 Target range: 278576 -> 280554 19 : TyrSerLeuGlnIleAsnArgTrpCysLeuLysProIleGlyAlaTrpProLeuLys< : 38 ||||||:!!|||!!:|||||||||! !|||||||||||||||!.!|||||||||!.. TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 39 : -><->AspSerAlaIleGluLysThrIleAlaPheIleGlnValAlaAlaCysSerTh : 55 ! !!!.!!:!:||||||! !! !:!! ! :!!! !.! ! ! !!!!! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 56 : rThrIleAlaIleValThrValProCysIleLeuTyrValLeuLeuGlu<->AspAsn : 73 ! !|||!.!.!!:!! !||||||||| !|||! !..!:!!|||!!: !..! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 74 : SerPheLysMetLysLeuSerAlaLeuGlyProLeuLeuHisArgIleIleGlySerI : 93 ..!.!! ! ! !|||:!!!.! !:!!||||||||| ! ! !!! !!:!.!!!!| AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 94 : leSerTyrUnkThrLeuLeuLysArgSerLysAspIleArgAspCysIleGlnHisMe : 112 ||!.!||| ! !|||:!!..!|||.!! ! ||| !! ! |||:!:.!. !!!! leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 113 : tGlnAlaAspTrpArgLeuVal<-><-><->ArgArgValGlnAspArgGluValMet : 128 :!::.!!|||||| !|||..! |||::: ::::::||||||:::||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 129 : LeuGlnTyrAlaLysPheGlyArgPheIleAlaGlyIleGlyAlaIleIleMetUnkG : 148 !.!. !|||!:!.!!||||||! !:!:||| !.!!.!!||| !.!!||| . ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 149 : lyGlyGlnLeuLeuPheGlyThrThrArgAlaIleLysThrValLysIleThrValGl : 167 .!||| !:!!!!!!:! !.!!..!! ! !!:!: .!!|||:::! !:!! erGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIl 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCAT : 279039 168 : yAsnGlnThrPheThrThrHisProMetThrCysProAlaTyrSerArgIleIleAsp : 186 !:!!.!. ! |||..!... !!....!!! !||| !||| !! !!:!!:!!||| eAspAsnGlu---ThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAsp 279040 : CGACAATGAA---ACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGAT : 279093 187 : ThrArgPheSerProMetAsnGluIleMetLeuValIleGlnPheValSerAlaPheA : 206 !!||| !|||||| ! !||||||:!!! ! !!!!:|||! !:!!:!!||||||! ProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheV 279094 : CCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCG : 279153 207 : laValSerSerAlaIleValSerValCysSerLeuAlaAlaValPheAlaMetHisAl : 225 .!:!!! !|||!.!! !|||.!!!.!||||||||| !|||||||||!.!||||||!. alLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisVa 279154 : TTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGT : 279210 226 : aCysGlyGlnLeuAsnValLeuTyrAlaTrpLeuAsnAspLeuIleGlu<-><->Glu : 242 !|||||||||!!!!..:!!||| .!! !|||:!! ! ||||||!!: :!! lCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLys 279211 : CTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAA : 279267 243 : TyrGluMetGlyAspArgSerValAspGlnLysLeuAlaIleIleValGluHisHisL : 262 ..!! !.!! !!!!!! !!!:|||::!|||!.! !|||:!!|||||||||| GlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisL 279268 : GGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATC : 279327 263 : euArgValLeu{Se} >>>> Target Intron 1 >>>> {r}LeuValThrCy : 270 ||!:!:!!|||{.!} 678 bp {!} !! ! !|| euLysIleLeu{Gl}++ ++{y}AspAspLeuCy 279328 : TGAAGATACTG{GG}gt.........................ag{A}GACGACTTATG : 280029 271 : s<->MetGluSerIleIleHisLysValCysPheValMetLeuAlaGlySerThrLeu : 288 | .!..!.! !:!!!!: |||:!!...|||||||||! !:!! !|||..!!!! sTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerLeuSerValPhe 280030 : TTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGTTGTCAGTTTTC : 280086 289 : AsnMetCysLeuLeuGlyTyrTyrValIleMetCysProIleLeuHisTyrIleTyrL : 308 ! !! !! !..! !! !:!! !! !! ! !! !||| !:!:!! ! ***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleS 280087 : TAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATAT : 280146 309 : euValSerPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrAspGln : 327 !:!!!!!||||||:!!||||||.!!|||||||||||||||||||||:!!!!:||| erLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 280147 : CTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt : 280203 328 : >>>> Target Intron 2 >>>> SerLysAsnIleGluAsnMetValTyrMetT : 337 74 bp !!! !!!.:!!! ..!||||||! ++CysLeuLysValGlyValSerThrTyrMetI 280204 : .........................agTGCTTAAAAGTCGGCGTGTCAACTTACATGA : 280307 338 : hrAspTrpTyrUnkLeuProHisLysThrAlaLeuCysPheIleLeuIleIleMetAr : 356 !||||||||| |||||| |||! !|||! ! !!!!.|||||||||.!! leAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaVa 280308 : TCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCGT : 280364 357 : gSerAsnTyrThrIleLysMetThrAlaGlyAsnLeuValTyrLeuLeuIleAlaThr : 375 !||||||! !:!!||||||:!:|||||||||!!.:!!:!! !!|||! !:!!::!!:! lSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSer 280365 : GTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGC : 280421 376 : PheGlyAsp >>>> Target Intron 3 >>>> MetIleLysThrSerMetAl : 385 ||| !!..! 71 bp :!!:!!||||||:!!.!.|| PheCysSer++ ++ValLeuLysThrAlaPheAl 280422 : TTCTGCAGCgt.........................agGTGTTAAAAACGGCATTCGC : 280522 386 : aTyrLeuAsnLeuLeuArgThrMetThrThr : 395 |||||||!:!||||||||||||:!:|||||| aTyrLeuSerLeuLeuArgThrLeuThrThr 280523 : ATATCTGAGCTTATTACGTACGCTTACCACA : 280554 vulgar: CbirOr24PSE 18 395 . KQ414889.1 278576 280554 + 464 M 19 57 G 0 6 M 34 102 G 0 3 M 48 144 G 0 9 M 51 153 G 1 0 M 70 210 G 0 6 M 24 72 S 0 2 5 0 2 I 0 674 3 0 2 S 1 1 M 4 12 G 0 3 M 56 168 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 280554 464 + . gene_id 11 ; sequence CbirOr24PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278577 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279340 . + . insertions 24 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 280018 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280017 280018 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280019 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280019 280202 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280554 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280554 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278577 280554 464 + . alignment_id 11 ; Query CbirOr24PSE ; Align 278577 19 57 ; Align 278640 38 102 ; Align 278745 72 144 ; Align 278898 120 153 ; Align 279051 172 210 ; Align 279267 242 72 ; Align 280020 267 12 ; Align 280035 271 168 ; Align 280277 327 156 ; Align 280504 379 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 442 Query range: 0 -> 275 Target range: 236798 -> 237626 1 : MetThrGlnValLysCysLysProValAspIleAlaTyrGluAsnValAsnAspTyrS : 20 |||!:!.!.! !||| ! ! !..!!!:||| ! ! !!:!||||||| MetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrS 236799 : ATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACA : 236856 21 : erLeuGlnIleAsnArgTrpCysLeuLysProIleGlyAlaTrpProLeuLysAspSe : 39 |||||||| |||||||||...:!!||| !||||||.!!||||||! ! ...|| erLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSe 236857 : GTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTC : 236913 40 : rAlaIleGluLysThrIleAlaPheIleGlnValAlaAlaCysSerThrThrIleAla : 58 | !:!!|||!:!!.!|||:!! ||| ! !!.! !|||! !|||.!!||| ! rAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeu 236914 : GAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTA : 236970 59 : IleValThrValProCysIleLeuTyrValLeuLeuGluAspAsnSerPheLysMetL : 78 .!! !! !:!!|||||| |||:!!:!!:!!|||||| ! ...!!!||| ! ! !| PheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrL 236971 : TTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGA : 237030 79 : ysLeuSerAlaLeuGlyProLeuLeuHisArgIleIleGlySerIleSerTyrUnkTh : 97 ||:!!!.! !|||||| !!||| !||| !!:!:.!! !!! !|||||||||...! ysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMe 237031 : AAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCAT : 237087 98 : rLeuLeuLysArgSerLysAspIleArgAspCysIleGlnHisMetGlnAlaAspTrp : 116 !|||||| !||| !!||| !|||||| !!! !.!!.!.||||||:!!.!!|||||| tLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrp 237088 : GCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGG : 237144 117 : ArgLeuValArgArgValGlnAspArgGluValMetLeuGlnTyrAlaLysPheGlyA : 136 ||| !..! ||| ::: :::||||||||||||:!!||||||||||||.!!| ArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerA 237145 : AGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTC : 237204 137 : rgPheIleAlaGlyIleGlyAlaIleIleMetUnkGlyGlyGlnLeuLeuPheGlyTh : 155 ||!:! ||| ! ! !!.!!|||.!!!!: |||||| !||| !!:! !!.. rgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysVa 237205 : GATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGT : 237261 156 : rThrArgAlaIleLysThrValLysIleThrValGlyAsnGlnThrPheThrThrHis : 174 !! !! !||| !! |||:!! :!!..!|||||||||:!!||| ! ! !!.! lMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLeuArg 237262 : TATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGC : 237318 175 : ProMetThrCysProAlaTyrSerArgIleIleAspThrArgPheSerProMetAsnG : 194 !:!! !!! ||| !|||!.! !!:!!:!! ..! ! !:! !!||||||! ValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnA 237319 : GTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACG : 237378 195 : luIleMetLeuValIleGlnPheValSerAlaPheAlaValSerSerAlaIleValSe : 213 !:|||:!::!!:!! !||||||:!!|||!.!||| !!.!!:!!:!::! :!!|| spIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSe 237379 : ACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAG : 237435 214 : rValCysSerLeuAlaAlaValPheAlaMetHisAlaCysGlyGlnLeuAsnValLeu : 232 |||| ||||||.!!::!!.!.!..!! ||||||! !|||||||||!:!|||:!! rValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValVal 237436 : TGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTT : 237492 233 : TyrAlaTrpLeuAsnAspLeuIleGluGlu<->TyrGluMetGlyAspArgSerValA : 251 !! !:!!.!.|||!!!:!:...||| ...! ||| ! !..! ! MetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAspHisP 237493 : ATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATCATT : 237552 252 : spGlnLysLeuAlaIleIleValGluHisHisLeuArgValLeuSerLeuValThrCy : 270 !.!.:!!:!! !!! !|||||||||.!.|||||||||||||||!.!! !||| !! heAspGluIleProThrIleValGluGluHisLeuArgValLeuLys***ValCysLe 237553 : TCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAGTATGTTT : 237609 271 : sMetGluSerIleIle : 275 :!!!!:! !|||:!: uLeuAspLeuIleLeu 237610 : GTTGGATTTGATTTTG : 237626 vulgar: CbirOr24PSE 0 275 . KQ414889.1 236798 237626 + 442 M 242 726 G 0 3 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236799 237626 442 + . gene_id 12 ; sequence CbirOr24PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236799 237626 . + . KQ414889.1 exonerate:protein2genome:local exon 236799 237626 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 236799 237626 442 + . alignment_id 12 ; Query CbirOr24PSE ; Align 236799 1 726 ; Align 237528 243 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 425 Query range: 8 -> 271 Target range: 221348 -> 222143 9 : ValAspIleAlaTyrGluAsnValAsnAspTyrSerLeuGlnIleAsnArgTrpCysL : 28 |||!!: !! !|||:!!!.. ! ! ! |||:!!|||:!:!:!|||||| !| ValGluTyrAspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleL 221349 : GTTGAATACGATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCT : 221406 29 : euLysProIleGlyAlaTrpPro<-><->LeuLysAspSerAlaIleGluLysThrIl : 45 ||||||||||||||!.!|||||| !!!. !|||.!!:!!|||!:! !:! euLysProIleGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLe 221407 : TGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCT : 221463 46 : eAlaPheIleGlnValAlaAlaCysSerThrThrIleAlaIleValThrValProCys : 64 ! !!:::!: ! !!.!!.!|||! !!:! !|||.!!.!!:!! !||||||||| uTyrTrpLeuIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCys 221464 : CTACTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGC : 221520 65 : IleLeuTyrValLeuLeuGluAspAsnSerPheLysMetLysLeuSerAlaLeuGlyP : 84 ! !|||||||||:!!||||||! .!...! !! ! ! !:!:!!!.! !||||||| SerLeuTyrValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyP 221521 : AGCCTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTC : 221580 85 : roLeuLeuHisArgIleIleGlySerIleSerTyrUnkThrLeuLeuLysArgSerLy : 103 ||||| ! ! !!:!:!!:!.!! !:!!!.!||| !|||:!! !..!!! roLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAs 221581 : CGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAA : 221637 104 : sAspIleArgAspCysIleGlnHisMetGlnAlaAspTrpArgLeuValArgArgVal : 122 .|||||||||!!:||||||:!!!.!!!::!! !||||||!:! !:!!! ! ! ! nAspIleArgGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSer 221638 : CGACATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCC : 221694 123 : GlnAspArgGluValMetLeuGlnTyrAlaLysPheGlyArgPheIleAlaGlyIleG : 142 :!!|||!:!!!::!!|||:!!:!! !!|||! ||||||||| :!: ! !||| LysAspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleC 221695 : AAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCT : 221754 143 : lyAlaIleIleMetUnkGlyGlyGlnLeuLeuPheGlyThrThrArgAlaIleLysTh : 161 !!.!!.!!.!!||| .!!||| :::...::: !.!!! ! !!.!!!.... ysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerVa 221755 : GCACATTTTTCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGT : 221811 162 : rValLysIleThrValGlyAsnGlnThrPheThrThrHisProMetThrCysProAla : 180 !! !|||||| !!!.! !:!! ... ||| ||||||..!! !||| ! lGlyLysIleProAlaGlnAspValAsnValThrPheIleProMetValPheProPhe 221812 : GGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTC : 221868 181 : TyrSerArgIleIleAspThrArgPheSerProMetAsnGluIleMetLeuValIleG : 200 ! !!! !|||:!!|||||||||!:!||||||:!:|||||||||:!!!!! !:!!| SerArgPheIleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuG 221869 : TCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTC : 221928 201 : lnPheValSerAlaPheAlaValSerSerAlaIleValSerValCysSerLeuAlaAl : 219 ||.!!:!!:!!!.! ! !:!! !||| !! ! !:!!!.!|||||||||!.!|| lnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAl 221929 : AAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGC : 221985 220 : aValPheAlaMetHisAlaCysGlyGlnLeuAsnValLeuTyrAlaTrpLeuAsnAsp : 238 |:!!||||||:!!|||||||||||||||:!!.!.|||||| ::!||||||!!. !! aMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHis 221986 : TATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACAT : 222042 239 : LeuIleGluGluTyrGluMetGlyAspArgSerValAspGlnLysLeuAlaIleIleV : 258 ||||||.!.! ! ! ! !!.!!:!||||||::!!:!:!!|||! |||| LeuIleAsnGlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleV 222043 : TTGATCAACGGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTG : 222102 259 : alGluHisHisLeuArgValLeuSerLeuValThrCysMet : 271 ||.!.!!.|||:!!|||:!!|||..!! !||| !|||!!: alAsnGlnHisValArgIleLeuGlnTyrValArgCysIle 222103 : TGAATCAACACGTTCGAATATTGCAGTATGTACGTTGTATC : 222143 vulgar: CbirOr24PSE 8 271 . KQ414889.1 221348 222143 + 425 M 27 81 G 0 6 M 236 708 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221349 222143 425 + . gene_id 13 ; sequence CbirOr24PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221349 222143 . + . KQ414889.1 exonerate:protein2genome:local exon 221349 222143 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221349 222143 425 + . alignment_id 13 ; Query CbirOr24PSE ; Align 221349 9 81 ; Align 221436 36 708 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 390 Query range: 12 -> 271 Target range: 226912 -> 227695 13 : TyrGluAsnValAsnAspTyrSerLeuGlnIleAsnArgTrpCysLeuLysProIleG : 32 |||:!!.!. ! :!! |||:!!|||:!:||||||||| |||||||||:!!| TyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuG 226913 : TATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCG : 226970 33 : lyAlaTrpPro<-><->LeuLysAspSerAlaIleGluLysThrIleAlaPheIleGl : 49 || !|||||| ! !|||..!||| !|||! !!:! !.!!:!!!:::!:.. lyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMe 226971 : GTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGAT : 227027 50 : nValAlaAlaCysSerThrThrIleAlaIleValThrValProCysIleLeuTyrVal : 68 !! ! ! !|||! !.!! !!!:::!.!!! ! !||| !! !! !||||||||| tGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrVal 227028 : GGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTG : 227084 69 : LeuLeuGluAspAsnSerPheLysMetLysLeuSerAlaLeuGlyProLeuLeuHisA : 88 :!!||||||! !!..!! ! ! ! ! !|||!.! !:!!||||||:!!! ! ! ValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPheP 227085 : GTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCT : 227144 89 : rgIleIleGlySerIleSerTyrUnkThrLeuLeuLysArgSerLysAspIleArgAs : 107 ! !!:..! !:!!!.!|||...! !||| ! !.!..! ! ||||||! !!! heAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGl 227145 : TCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGA : 227201 108 : pCysIleGlnHisMetGlnAlaAspTrpArgLeuValArgArgValGlnAspArgGlu : 126 :|||:!!:!!!..!!::!! !||||||!:! !:!!||| !:!!:!!||||||.!. uCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsn 227202 : GTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAAC : 227258 127 : ValMetLeuGlnTyrAlaLysPheGlyArgPheIleAlaGlyIleGlyAlaIleIleM : 146 ||||||:!! !|||||| ! !:!|||||| :!: ! !||| !!.!!.!!.!!: ValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheV 227259 : GTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCG : 227318 147 : etUnkGlyGlyGlnLeuLeuPheGlyThrThrArgAlaIleLysThrValLysIleTh : 165 !: ...... :::...||| ! !..! ! !!|||!!..!!! !!..:!!.! alPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerValAl 227319 : TCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGC : 227375 166 : rValGlyAsnGlnThrPheThrThrHisProMetThrCysProAlaTyrSerArgIle : 184 !..!! !:!! !!.! !!:! ! !! !||| !!! !||| ! !.!! !||| aThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIleIle 227376 : AACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATC : 227432 185 : IleAspThrArgPheSerProMetAsnGluIleMetLeuValIleGlnPheValSerA : 204 !|||..!|||!:!||||||.!.|||||||||.!.!!! !:!!|||||||||!!!! AlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValThrG 227433 : GCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAG : 227492 205 : laPheAlaValSerSerAlaIleValSerValCysSerLeuAlaAlaValPheAlaMe : 223 .!.!!!.!:!! !.!!!.!! !:!!!.!||||||:!!||||||:!!.!!|||:! lyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaVa 227493 : GTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGT : 227549 224 : tHisAlaCysGlyGlnLeuAsnValLeuTyrAlaTrpLeuAsnAspLeuIleGluGlu : 242 :|||||||||||||||:!!.!.|||||| :!!||||||... !!||||||!!:! lHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGly 227550 : TCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGC : 227606 243 : TyrGluMetGlyAspArgSerValAspGlnLysLeuAlaIleIleValGluHisHisL : 262 ! ! !..!!:!!!!:!!|||.!.!:!:!!|||! !|||||| ||||||: ArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValThrHisHisV 227607 : AGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACCACG : 227666 263 : euArgValLeuSerLeuValThrCysMet : 271 !!|||:!!|||!.!! !|||||||||!!: alArgIleLeuLysCysValThrCysIle 227667 : TTCGAATATTGAAGTGTGTAACGTGTATC : 227695 vulgar: CbirOr24PSE 12 271 . KQ414889.1 226912 227695 + 390 M 23 69 G 0 6 M 236 708 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226913 227695 390 + . gene_id 14 ; sequence CbirOr24PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226913 227695 . + . KQ414889.1 exonerate:protein2genome:local exon 226913 227695 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226913 227695 390 + . alignment_id 14 ; Query CbirOr24PSE ; Align 226913 13 69 ; Align 226988 36 708 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 274 Query range: 266 -> 394 Target range: 224140 -> 224770 267 : LeuValThrCysMetGluSerIleIleHisLysValCysPheValMetLeuAlaGlyS : 286 !!!:!!||| !! |||!.! !:!:!!.:!!|||! |||||| !!! !|||! PheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValGluPheLeuGlyC 224141 : TTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGGAATTTCTAGGCT : 224198 287 : erThrLeuAsnMetCysLeuLeuGlyTyrTyrValIleMet >>>> Target Int : 300 !!! !||||||!!:||||||||||||||||||||||||:!! 114 b ysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleVal++ 224199 : GCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTGgt............... : 224242 301 : ron 1 >>>> CysProIleLeuHisTyrIleTyrLeuValSerPheAsnIlePheI : 315 p !! !!!! :!! ! ::::::||||||||||||| -+ValThrTyrPheIleLeuLeuMetSerLeuThrPheAsnIlePheI 224243 : ..........cgGTGACTTACTTCATACTACTCATGTCtcttactttcaatattttta : 224399 316 : lePheCysTyrIleGlyGluIleLeuThrAspGln >>>> Target Intron 2 : 327 ||||||||||||||||||||:!::!!.!!!!:||| 65 bp lePheCysTyrIleGlyGluLeuValAlaGluGln++ 224400 : tattttgttacatAGGAGAGCTGGTAGCTGAAcaggt..................... : 224437 328 : >>>> SerLysAsnIleGluAsnMetValTyrMetThrAspTrpTyrUnkLeuProH : 344 :::...||| ...:!! !||||||! !||||||||| ||| !! ++CysGluLysIleGlyGlnValSerTyrMetIleAspTrpTyrArgLeuThrG 224438 : ....agtgtgaaaaaattggacaAGTGTCGTACATGATCGACTGGTATCGGTTGACTG : 224551 345 : isLysThrAlaLeuCysPheIleLeuIleIleMetArgSerAsnTyrThrIleLysMe : 363 !!.! ! !||||||! !|||||||||||| !! !||||||! !:!!||||||:! lyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLe 224552 : GAAATAAGAAACTATGCTGCATTCTGATAATCGCGATGTCCAATTCTTCGATAAAATT : 224608 364 : tThrAlaGlyAsnLeuValTyrLeuLeuIleAlaThrPheGlyAsp >>>> Targe : 379 !||||||||||||:!!||| ! |||! !:!!.!!|||||||||||| uThrAlaGlyAsnMetValGluLeuCysLeuThrThrPheGlyAsp++ 224609 : GACAGCGGGAAACATGGTCGAACTGTGTCTAACCACTTTCGGTGACgt.......... : 224658 380 : t Intron 3 >>>> MetIleLysThrSerMetAlaTyrLeuAsnLeuLeuArgTh : 392 67 bp :!::!!||||||:!!:!:|||!:!||||||:!!|||||||| ++ValValLysThrAlaValAlaPheLeuAsnValLeuArgTh 224659 : ...............agGTTGTCAAGACAGCTGTCGCATTTTTGAACGTGTTACGAAC : 224762 393 : rMetThr : 394 |:!!||| rLeuThr 224763 : ATTGact : 224770 vulgar: CbirOr24PSE 266 394 . KQ414889.1 224140 224770 + 274 M 33 99 5 0 2 I 0 110 3 0 2 M 27 81 5 0 2 I 0 61 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224141 224770 274 + . gene_id 15 ; sequence CbirOr24PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224141 224239 . + . KQ414889.1 exonerate:protein2genome:local exon 224141 224239 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224240 224241 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224240 224353 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224352 224353 . + . intron_id 0 ; splice_site "CG" KQ414889.1 exonerate:protein2genome:local cds 224354 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224354 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224655 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224655 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224656 224657 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224656 224722 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 224721 224722 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 224723 224770 . + . KQ414889.1 exonerate:protein2genome:local exon 224723 224770 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224141 224770 274 + . alignment_id 15 ; Query CbirOr24PSE ; Align 224141 267 99 ; Align 224354 300 81 ; Align 224500 327 156 ; Align 224723 379 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 261 Query range: 18 -> 264 Target range: 204236 -> 204974 19 : TyrSerLeuGlnIleAsnArgTrpCysLeuLysProIleGlyAlaTrpProLeu<->< : 37 |||:!! !!::.!! !:! ! !||| ! !:!!||||||||||||:!! TyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaTrpProIleProV 204237 : TACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGTGGCCGATTCCAG : 204294 38 : ->LysAspSerAlaIleGluLysThrIleAlaPheIleGlnValAlaAlaCysSerTh : 55 !!...!||| !!.!! !!:! !:!! ! |||:!! !!.!!.! ! alAsnSerSerProPheThrArgLeuValArgArgIleGluHisValValThrTyrPh 204295 : TGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGTAGTCACCtattt : 204351 56 : rThrIleAlaIleValThrValProCysIleLeuTyrValLeuLeuGluAspAsnSer : 74 ... ::::!!! !|||||| !!:!!|||||||||!!!|||:!!!!:!!.!:! eLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheLeuLysGluLysAsn 204352 : cctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAGAAC : 204408 75 : PheLysMetLysLeuSerAlaLeuGlyProLeuLeuHisArgIleIleGlySerIleS : 94 !|||!!::::|||!.! !|||||||||:!!:!!:!! !!! !||| !! !.!!! GlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSerIleGlnPhePheL 204409 : GGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCATACAGTTCTTCA : 204468 95 : erTyrUnkThrLeuLeuLysArgSerLysAspIleArgAspCysIleGlnHisMetGl : 113 .!|||.....!:!!||| ! |||! ! ! ! |||!:! ! !!:!:.!. !!!::: ysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSerLeuAsnThrIleAr 204469 : AGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGTTTGAACACCATCAG : 204525 114 : nAlaAspTrpArgLeuValArgArgValGlnAspArgGluValMetLeuGlnTyrAla : 132 ! !|||||| :!!! ! !! !! !:!!:!!||| !:!!.!.! !..! ! ||| gArgAspTrp---IleGluAlaThrAspGluAsnArgLeuIlePheArgSerLysAla 204526 : ACGCGACTGG---ATAGAGGCTACGGATGAAAATCGGTTGATTTTCCGCTCGAAAGCG : 204579 133 : LysPheGlyArgPheIleAlaGlyIleGlyAlaIleIleMetUnkGlyGlyGlnLeuL : 152 |||.!!|||||| :!: ! !|||!.!||| !! !||| |||||| |||! LysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetTyrGlyGlyGlyLeuC 204580 : AAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGTACGGCGGTGGTTTGT : 204639 153 : euPheGlyThrThrArgAlaIleLysThrValLysIleThrValGlyAsnGlnThrPh : 171 !!:! !!|||! !! ! !!:!: !! !! !! !||| ||| ! !.!.!.! ! ysTyrArgThrIleLeuProLeuLeuArgGlyThrIle---ValThrProAspAsnVa 204640 : GTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATC---GTAACACCTGATAACGT : 204693 172 : eThrThrHisProMetThrCysProAlaTyrSerArgIleIleAspThrArgPheSer : 190 !|||! !...|||:!! !!||||||!.!||| ......::: !!:! !||| lThrIleArgProLeuProCysProValTyrPheValPhePheAsnGluGlnArgSer 204694 : TACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaacGAGCAACGTTCG : 204750 191 : ProMetAsnGluIleMetLeuValIleGlnPheValSerAlaPheAlaValSerSerA : 210 |||! !!||||||:!:!!!:!!:!:|||.!!:!!:!!!.!|||!.!..!! !:!!! ProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheValThrTyrAlaV 204751 : CCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTGTTACTTACGCTG : 204810 211 : laIleValSerValCysSerLeuAlaAlaValPheAlaMetHisAlaCysGlyGlnLe : 229 .!||| !.!!..!|||.!!:!!..!|||:!!|||!.!:!:|||||||||.!!..!|| alIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAlaCysSerMetLe 204811 : TTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGCGTGCAGCATGCT : 204867 230 : uAsnValLeuTyrAlaTrpLeuAsnAspLeuIleGluGluTyrGluMetGlyAspArg : 248 |!..:!!||| ! !:!!|||! |||:!:!!::!! !!:||| !!!:! ! uArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAlaAspMetThrGluThr 204868 : GAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCGGACATGACCGAGACA : 204924 249 : SerValAspGlnLysLeuAlaIleIleValGluHisHisLeuArgVal : 264 !||| !!::!|||:!!||| !|||||||||:!!!!. !!:!:!! LeuValHisArgLysIleAlaAspIleValGluTyrGlnThrLysIle 204925 : CTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGAAGATA : 204974 vulgar: CbirOr24PSE 18 264 . KQ414889.1 204236 204974 + 261 M 18 54 G 0 6 M 80 240 G 1 0 M 47 141 G 1 0 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204237 204974 261 + . gene_id 16 ; sequence CbirOr24PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204237 204974 . + . KQ414889.1 exonerate:protein2genome:local exon 204237 204974 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 204237 204974 261 + . alignment_id 16 ; Query CbirOr24PSE ; Align 204237 19 54 ; Align 204297 37 240 ; Align 204537 118 141 ; Align 204678 166 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 227 Query range: 308 -> 394 Target range: 277428 -> 277842 309 : ValSerPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrAspGln >> : 327 :!: |||||||||||| ! ! ||||||||||||||||||||||||!!:||| MetCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277429 : ATgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt.. : 277485 328 : >> Target Intron 1 >>>> SerLysAsnIleGluAsnMetValTyrMetThr : 337 72 bp !!!|||!!.:!!! .!.:!!|||||||||||| ++CysLysLysValGlyGluValValTyrMetThr 277486 : .......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACG : 277585 338 : AspTrpTyrUnkLeuProHisLysThrAlaLeuCysPheIleLeuIleIleMetArgS : 357 :!!|||||| |||||| !!||| ! !||| !!!.:!!||||||||| |||| AsnTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgS 277586 : AATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGAT : 277645 358 : erAsnTyrThrIleLysMetThrAlaGlyAsnLeuValTyrLeuLeuIleAlaThrPh : 376 ||!:! ...||||||:::|||||||||...|||::: ::: !:!: !||||| erSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPh 277646 : CTAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTT : 277702 377 : eGlyAsp >>>> Target Intron 2 >>>> MetIleLysThrSerMetAlaT : 386 ||||||| 84 bp :!:|||||||||!!!.!.|||| eGlyAsp++ ++ValIleLysThrThrPheAlaT 277703 : CGGCGATgt.........................agGTAATAAAAACCACTTTCgcgt : 277816 387 : yrLeuAsnLeuLeuArgThrMetThr : 394 ||||||||:::|||||| !! !||| yrLeuAsnIleLeuArgGlnThrThr 277817 : atttaaatattctacgCCAAACGACG : 277842 vulgar: CbirOr24PSE 308 394 . KQ414889.1 277428 277842 + 227 M 18 54 5 0 2 I 0 68 3 0 2 M 52 156 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277429 277842 227 + . gene_id 17 ; sequence CbirOr24PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277429 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277429 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277429 277842 227 + . alignment_id 17 ; Query CbirOr24PSE ; Align 277429 309 54 ; Align 277555 327 156 ; Align 277795 379 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 225 Query range: 111 -> 265 Target range: 304413 -> 304866 112 : MetGlnAlaAspTrpArgLeuValArgArgValGlnAspArgGluValMetLeuGlnT : 131 :!:....!!! !::..!! !|||..! !:!!::!|||||||||:!!||||||:!!| LeuSerThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysT 304414 : CTCTCTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAAT : 304471 132 : yrAlaLysPheGlyArgPheIleAlaGlyIleGlyAlaIleIleMetUnkGlyGlyGl : 150 ||!.!:!!.!.|||||| !:!:.!! !||| !!||||||.!!||| !||| yrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGl 304472 : ACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGG : 304528 151 : nLeuLeuPheGlyThrThrArgAlaIleLysThrValLysIleThrValGlyAsnGln : 169 !:!!!:! !|||..!! ! !.!! !||| !! !|||! !.!. ! yThrIleTyrHisThrValMetGlnPheAlaThr---GlyThrTyrValAspGluTyr 304529 : CACCATTTATCACACGGTCATGCAGTTCGCGACC---GGAACGTATGTGGATGAGTAT : 304582 170 : ThrPheThrThrHisProMetThrCysProAlaTyrSerArgIleIleAspThrArgP : 189 !.! !|||! ! ! |||:!:..!! !|||.!!|||||| !:!!.!!|||..!!:! AsnArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnT 304583 : AATCGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAA : 304642 190 : heSerProMetAsnGluIleMetLeuValIleGlnPheValSerAlaPheAlaValSe : 208 ||||||!!: !!|||:!::!:! ! !!:!!!!.! !:!!!!!!.!!:!!.!:!!! hrSerProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTy 304643 : CAAGCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTA : 304699 209 : rSerAlaIleValSerValCysSerLeuAlaAlaValPheAlaMetHisAlaCysGly : 227 !||| !! !!.!.!!!.!|||.!!|||||||||:!!||||||! |||||||||||| rSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGly 304700 : TTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGA : 304756 228 : GlnLeuAsnValLeuTyrAlaTrpLeuAsnAspLeuIleGluGluTyrGluMetGlyA : 247 |||:!!:!!:!!:!! :!! ! |||..!||||||:!!.!.... ! ||| ..!| GlnIleAspIleValMetSerArgLeuGlyAspLeuValAsnSerLysGluSerSerA 304757 : CAAATTGATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCATCTG : 304816 248 : spArgSerValAspGlnLysLeuAlaIleIleValGluHisHisLeuArgValLeu : 265 || :!!|||:!!::!||| ! !|||||||||||||||||||||:!!||| sp------LeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIleLeu 304817 : AT------TTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTA : 304866 vulgar: CbirOr24PSE 111 265 . KQ414889.1 304413 304866 + 225 M 50 150 G 1 0 M 85 255 G 2 0 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304414 304866 225 + . gene_id 18 ; sequence CbirOr24PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304414 304866 . + . KQ414889.1 exonerate:protein2genome:local exon 304414 304866 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 304414 304866 225 + . alignment_id 18 ; Query CbirOr24PSE ; Align 304414 112 150 ; Align 304564 163 255 ; Align 304819 250 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 207 Query range: 308 -> 394 Target range: 272893 -> 273302 309 : ValSerPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuThrAspGln >> : 327 :!::::||||||||||||||| ||||||||||||||||||||||||!!:::! MetThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272894 : ATgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt.. : 272950 328 : >> Target Intron 1 >>>> SerLysAsnIleGluAsnMetValTyrMetThr : 337 70 bp |||...||| .!.:!:|||||||||||| ++CysLysLysIleGlyGluValValTyrMetThr 272951 : .......................agtgtaaaaaaattggcGAGGTAGTTTACATGACG : 273048 338 : AspTrpTyrUnkLeuProHisLysThrAlaLeuCysPheIleLeuIleIleMetArgS : 357 :!!|||||| |||||| !||| ! !||| !.!.|||||||||||| |||! AsnTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgC 273049 : AACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGAT : 273108 358 : erAsnTyrThrIleLysMetThrAlaGlyAsnLeuValTyrLeuLeuIleAlaThrPh : 376 !!!:! !..!||||||!!:|||||||||!..:!!||| !:!!! !:!: !||||| ysSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPh 273109 : GCAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTT : 273165 377 : eGlyAsp >>>> Target Intron 2 >>>> MetIleLysThrSerMetAlaT : 386 ||||||| 81 bp ::!!!:|||!:!:!!.!.|||| eGlyAsp++ ++ValMetLysSerAlaPheAlaT 273166 : CGGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGT : 273276 387 : yrLeuAsnLeuLeuArgThrMetThr : 394 ||||||||:!!|||||| !! !||| yrLeuAsnMetLeuArgGlnThrThr 273277 : ACTTAAATATGCTACGACAAACGACA : 273302 vulgar: CbirOr24PSE 308 394 . KQ414889.1 272893 273302 + 207 M 18 54 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272894 273302 207 + . gene_id 19 ; sequence CbirOr24PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272894 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272894 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272894 273302 207 + . alignment_id 19 ; Query CbirOr24PSE ; Align 272894 309 54 ; Align 273018 327 156 ; Align 273255 379 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 325 -> 394 Target range: 244655 -> 244951 326 : GlnSerLysAsnIleGluAsnMetValTyrMetThrAspTrpTyrUnkLeuProHisL : 345 |||!!! !!!.:!!! .!.:!!||||||||||||||||||||| ||||||!!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 346 : ysThrAlaLeuCysPheIleLeuIleIleMetArgSerAsnTyrThrIleLysMetTh : 364 :!! ! !||| !!!.||||||||||||! ||||||||| ..!:!!:!!!!:|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 365 : rAlaGlyAsnLeuValTyrLeuLeuIleAlaThrPheGlyAsp >>>> Target I : 379 |||||||!!.:!!:!!:!!:!!! !:!! !|||||||||||| 89 rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAsp++ 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATgt............. : 244817 380 : ntron 1 >>>> MetIleLysThrSerMetAlaTyrLeuAsnLeuLeuArgThrMe : 393 bp :!::!!||||||.!!.!.||||||||||||:!!||| !! !|| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMe 244818 : ............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAAAT : 244946 394 : tThr : 394 |:!! tSer 244947 : GTCC : 244951 vulgar: CbirOr24PSE 325 394 . KQ414889.1 244655 244951 + 174 M 53 159 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244951 174 + . gene_id 20 ; sequence CbirOr24PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244656 244814 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244814 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244815 244816 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244815 244903 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244902 244903 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244904 244951 . + . KQ414889.1 exonerate:protein2genome:local exon 244904 244951 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244951 174 + . alignment_id 20 ; Query CbirOr24PSE ; Align 244656 326 159 ; Align 244904 379 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 159 -> 326 Target range: 300159 -> 301797 160 : LysThrValLysIleThrValGlyAsnGlnThrPheThrThrHisProMetThrCysP : 179 |||!:! !!!. !||| ! !!..:!!!.!!:!||| ! ! |||:!:.!!! !| LysSerLysAsnTyrThrTyrLysArgGluAsnTyrThrTyrLysProLeuAlaTyrP 300160 : AAAAGCAAGAATTACACTTACAAAAGGGAGAATTACACTTACAAACCGTTAGCCTATC : 300217 180 : roAlaTyrSerArgIleIleAspThrArgPheSerProMetAsnGluIleMetLeuVa : 198 ||!.!|||..! !!.!!|||||||||!:! !||||||! !!||||||:::... roGlyTyrAspTrpPheIleAspThrGlnThrSerProThrTyrGluIleValPhePh 300218 : CTGGCTACGATTGGTTTATCGATACACAAACCAGTCCTACCTACGAgatcgtattttt : 300274 199 : lIleGlnPheValSerAlaPheAlaValSerSerAlaIleValSerValCysSerLeu : 217 ...... !!:!!|||.!. !:!!! !!:!!.!! !..!:!!!.!! !|||||| ePheHisCysPheAlaAlaMetIleMetTyrAsnValThrThrAlaAlaTyrSerLeu 300275 : ctttcactgttTCGCAGCGATGATCATGTACAACGTGACAACGGCAGCGTACAGTTTG : 300331 218 : AlaAlaValPheAlaMetHisAlaCysGlyGlnLeuAsnValLeuTyrAlaTrpLeuA : 237 ||||||:!!|||!.!! ||| !|||||||||:!!.!.:!!! ! ||| ! |||. AlaAlaIlePheValThrHisIleCysGlyGlnIleGlnIleGlnMetAlaArgLeuG 300332 : GCGGCGATATTCGTCACTCATATCTGTGGACAGATTCAGATACAGATGGCGAGATTGG : 300391 238 : snAspLeuIleGluGluTyrGluMetGlyAspArgSerValAspGlnLysLeuAlaIl : 256 !.||||||:!:|||..! ! ! ! !||| !.!! !||| |||!.!:! luAspLeuValGluArgThrGlyGluLysAspAspGlyProAsp---ProLeuValVa 300392 : AGGATCTGGTGGAGAGGACGGGAGAGAAGGACGACGGTCCTGAT---CCTTTGGTCGT : 300445 257 : eIleValGluHisHis >>>> Target Intron 1 >>>> LeuArgValLeuS : 266 !||||||..! !!||| 1142 bp ||| ! !!!!| lIleValArgAspHis++ -+LeuAlaAsnPheS 300446 : TATCGTTCGAGATCACgt.........................cgTTAGCCAACTTTT : 301617 267 : erLeuValThrCysMetGluSerIleIleHisLysValCysPheValMetLeuAlaGl : 285 ||! !:!! ||| |||:!! !||| |||.!. !::!.. erSerLeuArgCysAsn***Ile***IleTyrPheLysCysLysValPheThrSerAs 301618 : CATCTCTGCgctgtaattaaatttgaatctACTTTAAATGCAAAGTTTTTACGAGTAA : 301674 286 : ySerThrLeuAsnMetCysLeuLeuGlyTyrTyrValIleMetCysProIleLeuHis : 304 !! !! !|||...|||... !! ! !!:!! !! ! !:!: !|||!!!||| nLeuIleLeuGlyMetAlaLys***ArgHisAspArgTyrVal---AspIlePheHis 301675 : TTTGATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTT---GACATTTTTCAC : 301728 305 : TyrIleTyrLeuValSerPhe-AsnIlePheIlePheCysTyrIleGlyGluIleLeu : 323 ! !:!! !!:!!||| !|||#|||||||||||||||||||||||||||||||||||| SerValAsnValValHisPhe#AsnIlePheIlePheCysTyrIleGlyGluIleLeu 301729 : TCTGTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTT : 301786 324 : ThrAspGln : 326 :!!!!:||| SerGluGln 301787 : TCCGAACAG : 301797 vulgar: CbirOr24PSE 159 326 . KQ414889.1 300159 301797 + 166 M 92 276 G 1 0 M 9 27 5 0 2 I 0 1138 3 0 2 M 38 114 G 1 0 M 11 33 F 0 1 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300160 301797 166 + . gene_id 21 ; sequence CbirOr24PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300160 300462 . + . KQ414889.1 exonerate:protein2genome:local exon 300160 300462 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 300463 300464 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300463 301604 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301603 301604 . + . intron_id 0 ; splice_site "CG" KQ414889.1 exonerate:protein2genome:local cds 301605 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301605 301797 . + . insertions 0 ; deletions 1 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local similarity 300160 301797 166 + . alignment_id 21 ; Query CbirOr24PSE ; Align 300160 160 276 ; Align 300436 253 27 ; Align 301605 262 114 ; Align 301719 301 33 ; Align 301753 312 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 277 -> 391 Target range: 264579 -> 265001 278 : ValCysPheValMetLeuAlaGlySerThrLeuAsnMetCysLeuLeuGlyTyrTyrV : 297 :!! .!.:!! :!!..!|||!:!! !!!! ||||||! !:!!||| ! : MetIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleL 264580 : ATGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATAT : 264637 298 : alIleMetCysProIleLeuHisTyrIleTyrLeuValSerPheAsnIlePheIlePh : 316 !!! ! ! ||| ::: ||| |||! ! ! |||.!.! !!: euThrGluGlnValIleLysAsnValIle******Val***HisLeuIleLeuLysTy 264638 : TGACTGAGcaggtaattaaaaatgtaatataataagTTTAACACCTAATTCTAAAATA : 264694 317 : eCysTyrIleGlyGluIleLeuThrAspGlnSerLysAsnIleGluAsnMetValTyr : 335 ! ! !..!..!! !:!! ! ! |||!!!|||!!.:!!! .!.:!!|||||| rAspArg***SerSerSerIlePhe***GlnCysLysLysValGlyGluValValTyr 264695 : TGATCGGTAATCATCGAGCATTTTCTAACAGTGTAAGAAAGTTGGTGAGGTGGTTTAC : 264751 336 : MetThrAspTrpTyrUnkLeuProHisLysThrAlaLeuCysPheIleLeuIleIleM : 355 |||:!!:!!|||||| ||||||:!!||| ! !||| !.!.||||||||||||: MetSerAsnTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLeuIleIleL 264752 : ATGTCGAATTGGTATTACTTACCCTACAAAGATATCCTTGATCTGATTCTCATCATTT : 264811 356 : etArgSerAsnTyrThrIleLysMetThrAlaGlyAsnLeuValTyrLeuLeuIleAl : 374 !:||||||!:! ..!.!!|||.!.|||||||||!!.:!!:!!:!!:!!! !!!: euArgSerSerValValPheLysPheThrAlaGlyLysIleLeuHisMetSerMetTy 264812 : TAAGATCCAGCGTGGTGTTTAAATTCACCGCTGGAAAGATACTTCACATGTCCATGTA : 264868 375 : aThrPheGlyAsp >>>> Target Intron 1 >>>> MetIleLysThrSerM : 384 !||||||.!!||| 80 bp :!:||||||:!!|||. rThrPheSerAsp++ ++ValIleLysSerSerP 264869 : CACATTCAGTGACgt.........................aggTAATCAAATCCTCTT : 264978 385 : etAlaTyrLeuAsnLeuLeuArg : 391 !..!!|||||||||||||||||| heThrTyrLeuAsnLeuLeuArg 264979 : TCACGTACTTAAACTTACTTCGC : 265001 vulgar: CbirOr24PSE 277 391 . KQ414889.1 264579 265001 + 164 M 101 303 5 0 2 I 0 76 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264580 265001 164 + . gene_id 22 ; sequence CbirOr24PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264580 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264580 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265001 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265001 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264580 265001 164 + . alignment_id 22 ; Query CbirOr24PSE ; Align 264580 278 303 ; Align 264963 379 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 325 -> 385 Target range: 238625 -> 238805 326 : GlnSerLysAsnIleGluAsnMetValTyrMetThrAspTrpTyrUnkLeuProHisL : 345 |||!!! !!!.:!!! .!.:!!||||||||||||||||||||| ||||||!!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 346 : ysThrAlaLeuCysPheIleLeuIleIleMetArgSerAsnTyrThrIleLysMetTh : 364 :!! ! !||| !!!.||||||||||||! ||||||||| ..!:!!|||:!:|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 365 : rAlaGlyAsnLeuValTyrLeuLeuIleAlaThrPheGlyAspMetIleLysThrSer : 383 |||||||!!.:!!:!!:!!:!!! !:!! !||||||||||||:!:! !:!!|||!:! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 384 : MetAla : 385 :!:||| LeuAla 238798 : CTTGCT : 238805 vulgar: CbirOr24PSE 325 385 . KQ414889.1 238625 238805 + 152 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238805 152 + . gene_id 23 ; sequence CbirOr24PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238805 152 + . alignment_id 23 ; Query CbirOr24PSE ; Align 238626 326 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 183 -> 241 Target range: 202712 -> 202886 184 : IleIleAspThrArgPheSerProMetAsnGluIleMetLeuValIleGlnPheValS : 203 |||||||||..!|||!:!||||||:!!|||||||||.!.!!! !|||!:!.!!|||: IleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleValA 202713 : ATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCGTAG : 202770 204 : erAlaPheAlaValSerSerAlaIleValSerValCysSerLeuAlaAlaValPheAl : 222 !!!.!.!! !:!! !.!!!.!! !|||.!!!.!|||!!!|||.!!|||:!!||||| laValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPheAl 202771 : CTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTTTGC : 202827 223 : aMetHisAlaCysGlyGlnLeuAsnValLeuTyrAlaTrpLeuAsnAspLeuIleGlu : 241 |:!:|||! !|||||||||:!!:!!|||||| |||||||||.!. !!|||!!:!!: aValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMetAsp 202828 : GGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATGGAT : 202884 vulgar: CbirOr24PSE 183 241 . KQ414889.1 202712 202886 + 150 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202713 202886 150 + . gene_id 24 ; sequence CbirOr24PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202713 202886 . + . KQ414889.1 exonerate:protein2genome:local exon 202713 202886 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202713 202886 150 + . alignment_id 24 ; Query CbirOr24PSE ; Align 202713 184 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 325 -> 384 Target range: 254271 -> 254448 326 : GlnSerLysAsnIleGluAsnMetValTyrMetThrAspTrpTyrUnkLeuProHisL : 345 |||!!! !!!.:!!! .!.:!!||||||||||||||||||||| ||||||!!.! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 346 : ysThrAlaLeuCysPheIleLeuIleIleMetArgSerAsnTyrThrIleLysMetTh : 364 :!! ! !||| !!!.||||||||||||! ||||||||| ..!:!!:!!!!:|| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 365 : rAlaGlyAsnLeuValTyrLeuLeuIleAlaThrPheGlyAspMetIleLysThrSer : 383 |||||||...::: ::::::! !:!! !||||||||||||:!:! !:!!|||!:! rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 254443 384 : Met : 384 :!: Leu 254444 : CTT : 254448 vulgar: CbirOr24PSE 325 384 . KQ414889.1 254271 254448 + 143 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254448 143 + . gene_id 25 ; sequence CbirOr24PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254448 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254448 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254448 143 + . alignment_id 25 ; Query CbirOr24PSE ; Align 254272 326 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 12 -> 115 Target range: 299671 -> 299989 13 : TyrGluAsnValAsnAspTyrSerLeuGlnIleAsnArgTrpCysLeuLysProIleG : 32 |||:!!|||! !! !!|||!!!||||||!!: !!:!|||! ||||||||||||| TyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleG 299672 : TACCAAAATGACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCG : 299729 33 : lyAlaTrpProLeuLysAsp<-><-><->SerAlaIleGluLysThrIleAlaPheIl : 48 ||!.!|||! !||| !||| ||| !:!:||| ! !:!!:!!.!!:! lyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuValSerIleVa 299730 : GAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGT : 299786 49 : eGlnValAlaAlaCysSerThrThrIleAlaIleValThrValProCysIleLeuTyr : 67 !! :!!.!! !|||! !:!!!:!:!: !.!!:!!..!:!!|||! ! !! !||| lLeuMetThrIleCysPheSerSerLeuPhePheIleValLeuProSerGlyHisTyr 299787 : TCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTAC : 299843 68 : ValLeuLeuGluAspAsnSerPheLysMetLysLeuSerAlaLeuGlyProLeuLeuH : 87 :!!!!!!!!! !!!:!!.|||.!. ! :!:|||:!!!.!!.!!!!||||||:!! ! IlePhePheAlaGluLysSerIleHisValLysValLysValPheGlyProValGlyP 299844 : ATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTT : 299903 88 : isArgIleIleGlySerIleSerTyrUnkThrLeuLeuLysArgSerLysAspIleAr : 106 ! !!:!! !..!! !:!!!.!||| !|||! ! !!.!.!! ! .!!.. heCysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGl 299904 : TTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGA : 299960 107 : gAspCysIleGlnHisMetGlnAlaAsp : 115 ! ||||||||||||:!::!! !||| uArgCysIleGlnHisValGluArgAsp 299961 : ACGATGCATCCAACACGTCGAGAGAGAC : 299989 vulgar: CbirOr24PSE 12 115 . KQ414889.1 299671 299989 + 128 M 26 78 G 0 9 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299672 299989 128 + . gene_id 26 ; sequence CbirOr24PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299672 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299672 299989 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299672 299989 128 + . alignment_id 26 ; Query CbirOr24PSE ; Align 299672 13 78 ; Align 299759 39 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 325 -> 388 Target range: 230244 -> 230433 326 : GlnSerLysAsnIleGluAsnMetValTyrMetThrAspTrpTyrUnkLeuProHisL : 345 |||!!!!:!!!.:!!! .!.! ! !||||||! !!!:|||||| ||| !! ! GlnCysArgLysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyA 230245 : CAGTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAA : 230302 346 : ysThrAlaLeuCysPheIleLeuIleIleMetArgSerAsnTyrThrIleLysMetTh : 364 !.! ! !||||||! !|||||||||||| ! !||||||! !:!!! |||.!.|| snLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheTh 230303 : ACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTAC : 230359 365 : rAlaGlyAsnLeuValTyrLeuLeuIleAlaThrPheGlyAspMetIleLysThrSer : 383 ||||||||||:!!||| ! |||! !:!! !||||||.!!|||:!:! !! ! !! ! rAlaGlyAsnMetValGluLeuSerValAsnThrPheSerAspValSerIleIlePhe 230360 : AGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGACGTAAGTATCATATTC : 230416 384 : MetAlaTyrLeuAsn : 388 !.!||| !||| SerValTyrThrAsn 230417 : TCTGTTTACACGAAT : 230433 vulgar: CbirOr24PSE 325 388 . KQ414889.1 230244 230433 + 120 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230245 230433 120 + . gene_id 27 ; sequence CbirOr24PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230245 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230245 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230245 230433 120 + . alignment_id 27 ; Query CbirOr24PSE ; Align 230245 326 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 327 -> 379 Target range: 219515 -> 219671 328 : LysAsnIleGluAsnMetValTyrMetThrAspTrpTyrUnkLeuProHisLysThrA : 347 :::...||| ...||| !||||||! !!!:|||||| ||| !! |||! ! ArgLysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysL 219516 : aggaaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAA : 219573 348 : laLeuCysPheIleLeuIleIleMetArgSerAsnTyrThrIleLysMetThrAlaGl : 366 !|||!! !:!!|||! !||| ! !||||||! !:!!||||||:!!|||||||| ysLeuTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGl 219574 : AGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGG : 219630 367 : yAsnLeuValTyrLeuLeuIleAlaThrPheGlyAspMet : 379 ||||:!!||| ! |||! !|||::!|||||| !|||:!! yAsnMetValGluLeuSerIleSerThrPheThrAspVal 219631 : AAATATGGTCGAATTGTCTATCAGCACTTTTACCGACGTG : 219671 vulgar: CbirOr24PSE 327 379 . KQ414889.1 219515 219671 + 117 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219516 219671 117 + . gene_id 28 ; sequence CbirOr24PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219516 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219516 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219516 219671 117 + . alignment_id 28 ; Query CbirOr24PSE ; Align 219516 328 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 336 -> 379 Target range: 206272 -> 206401 337 : ThrAspTrpTyrUnkLeuProHisLysThrAlaLeuCysPheIleLeuIleIleMetA : 356 ..!:!!|||||| ||||||:!!!:! !|||! !! !.!.|||||||||||| ! ValAsnTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaM 206273 : GTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCA : 206330 357 : rgSerAsnTyrThrIleLysMetThrAlaGlyAsnLeuValTyrLeuLeuIleAlaTh : 375 !||||||||| !!||||||:!:|||||||||!!.:!! !! ! :!!! !:!!|||!: etSerAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSe 206331 : TGTCTAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAG : 206387 376 : rPheGlyAspMet : 379 !||| !|||:!: rPheThrAspVal 206388 : TTTCACCGATGTA : 206401 vulgar: CbirOr24PSE 336 379 . KQ414889.1 206272 206401 + 104 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206273 206401 104 + . gene_id 29 ; sequence CbirOr24PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206273 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206273 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206273 206401 104 + . alignment_id 29 ; Query CbirOr24PSE ; Align 206273 337 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 325 -> 388 Target range: 292389 -> 292578 326 : GlnSerLysAsnIleGluAsnMetValTyrMetThrAspTrpTyrUnkLeuProHisL : 345 |||.!!!...!.|||! !:!! !||| |||!!:|||||| ||||||...: GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 346 : ysThrAlaLeuCysPheIleLeuIleIleMetArgSerAsnTyrThrIleLysMetTh : 364 :!! !|||! ! !.!!:!!|||:!::!! ! !!!!!!.:!! !!||||||:!:|| rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 365 : rAlaGlyAsnLeuValTyrLeuLeuIleAlaThrPheGlyAspMetIleLysThrSer : 383 |||||||!!.:!! !! !|||! !:!: !|||||||||! !:!: !:!!:!!!.! rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSerLys 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCAAAA : 292561 384 : MetAlaTyrLeuAsn : 388 :!:!.!! :!!:!! LeuValLeuIleHis 292562 : CTAGTCTTGATACAC : 292578 vulgar: CbirOr24PSE 325 388 . KQ414889.1 292389 292578 + 102 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 292578 102 + . gene_id 30 ; sequence CbirOr24PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292390 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 292578 102 + . alignment_id 30 ; Query CbirOr24PSE ; Align 292390 326 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 938 Query range: 14 -> 410 Target range: 289708 -> 293248 15 : AsnValHisHisGlnArgAspIleArgTyrAlaThrGlnLeuSerArgTrpIleLeuL : 34 |||! !!.!:!!:!!! !||||||||||||.!! !:!!|||!!!!.!|||||||||| AsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleLeuL 289709 : AACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCTTGA : 289766 35 : ysProIleGlyIleTrpHisLeuIleTyrAlaArgSerSerArgValGluLysLeuPh : 53 |||||||||||!!:!::! !!!!:!!!:!::!|||:!!|||||| !|||::! ! ysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgThrAl 289767 : AACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGC : 289823 54 : eSerValThrMetIlePheValCysPheAlaValLeuPhePheValLeuValProSer : 72 |||||| !:!!|||.!.||||||! !:!!:!!||| |||:!!:!!||||||! ! aSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValProPhe 289824 : GTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCGTTC : 289880 73 : SerProTyrValLeuPheSerLysAsnAsnIleSerThrLysAlaLysLeuLeuGlyP : 92 |||! !:!!|||||||||||| ! |||:!!!!:!:!||| !.!||| !||||||| SerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuGlyP 289881 : AGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCGGAC : 289940 93 : roValLeuPheCysLeuThrSerAlaValLysTyrTyrPheLeuGlyThrArgGlyGl : 111 ||:!! !||||||||||||!!! ! !!||||||! !!:!!!!.!!! !!:!|||.. roLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGlySe 289941 : CGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGGTTC : 289997 112 : uMetIleGlyArgCysValAsnGlnMetGluAspAspTrpArgIleValArgTyrGln : 130 ! !|||||||||||||||!!.!!.!!:||| ||||||!:!!!::!!||| !!:!! rAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAspGlu 289998 : AGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGACGAG : 290054 131 : AspHisArgLysMetMetLeuAspAsnAlaLeuValGlyArgArgLeuThrThrLeuS : 150 ||||||||| !!:|||||| !!!.! !:!!.!!|||!.!|||! !! !|||! AspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysLeuC 290055 : GATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAACTGT : 290114 151 : erValIlePheLeuTyrThrGlyGlyLeuSerTyrHisIleIleLeuProPheSerTh : 169 !!!.!||||||||||||! !|||||||||||||||:!!! !:!!:!!|||!!.! !:! ysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPheSe 290115 : GCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTTCTC : 290171 170 : rLysLysGlyLeuAsnAsnThrPheThrAsnLysProLeuIleTyrGlnGlyTyrAsp : 188 !||||||.!!:!!|||..!!.! ! |||! !!:!||||||! !|||! ||||||!!: rLysLysSerValAsnGlyAsnValThrIleArgProLeuThrTyrProGlyTyrGlu 290172 : GAAGAAGAGCGTGAACGGTAACGTGACTATCAGACCTCTAACTTATCCCGGTTACGAG : 290228 189 : ValTyrPheAspSerGlnAlaSerProAlaTyrAspIleValPheSerValHisCysV : 208 ! !!:!|||||| !||| !||||||||||||!!:|||||||||!!!:!!||||||| GluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetHisCysV 290229 : GAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTG : 290288 209 : alSerAlaValIleGlnTyrAsnIleThrThrAlaAlaCysSerLeuAlaAlaIlePh : 227 ||! !!.!:!!||| ! |||||||||! !||||||! !||||||.!!.!!||||| alTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePh 290289 : TCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGATCTT : 290345 228 : eValMetHisValCysGlyGlnValGlnIleLeuMetThrMetLeuGlyAspLeuVal : 246 |!.!! |||..!|||||||||:!!:!!|||! !! !||| !|||! !||||||..! eAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAspLeuThr 290346 : CGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTGACA : 290402 247 : GluGlyGluArgAspLysGlyThrSerValGluGluArgLeuGlyValIleAlaArgT : 266 :!! !!! !! ! !! !! !.!!|||...!!:||||||!.!|||:!!!.!!!! LysArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValValValSerG 290403 : AAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTGTGAGCG : 290462 267 : yrHisValArgValLeu{Ar} >>>> Target Intron 1 >>>> {g}PheAl : 274 !||||||..!:!!|||{!:} 655 bp {!}|||.! lyHisValGluIleLeu{Ly}++ ++{s}PheTh 290463 : GTCACGTGGAGATCTTG{AA}gt.........................ag{A}TTCAC : 291141 275 : aValAspValGluGluValLeuArgGluMetCysLeuMetGluLeuValAlaAlaThr : 293 ! ! :!!|||...!.!|||!.!|||!!:! !|||!!:|||:!!:!!!.!:!!||| rArgMetIleGluSerAlaLeuHisGluIlePheLeuIleGluValIleValSerThr 291142 : GAGGATGATCGAAAGCGCGTTGCATGAAATATTCTTGATAGAAGTAATAGTATCCACT : 291198 294 : PheIleIleCysLeuLeuGluTyrTyrIleMetThr >>>> Target Intron 2 : 306 ! :!!:!!||||||:!!|||||| !:!!|||! ! 132 bp ValLeuLeuCysLeuIleGluTyrLeuLeuMetMet++ 291199 : GTGTTACTATGCTTGATCGAATATCTCTTAATGATGgt.................... : 291239 307 : >>>> GluTrpGluAsnSerAspValLeuGlyIleAlaThrTyrPheIleLeuPhe : 322 |||||||||!:!|||||| !:!!|||||| !|||||| !!! !|||.!! ++GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeu 291240 : .....agGAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTC : 291417 323 : IleSerLeuSerPheAsnPheLeuIlePheCysTyrIleGlyGluLeuLeuValGluG : 342 ! !|||!!!!!!||||||.!.|||||||||||||||:!!||||||||||||:!!! !: ThrSerPheThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyG 291418 : ACTTCTTTCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGAC : 291477 343 : lu >>>> Target Intron 3 >>>> TyrSerLysIleAlaSerAlaValTyr : 351 !! 913 bp !|||:!!|||||| !||| !||| ln++ ++GlySerGluIleAlaHisAlaSerTyr 291478 : AGgt.........................agGGTAGTGAAATCGCGCACGCTTCCTAC : 292417 352 : GlyIleAsnTrpTyrAspLeuProGlyHisLysAlaLeuHisLeuValMetIleIleT : 371 ! !! !.!.||||||:!!|||||| !!!..||||||! ! !!:!!|||:!!:!::!!. AspThrGluTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuValLeuA 292418 : GATACAGAATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTG : 292477 372 : hrMetSerGlnTyrProProLysLeuThrAlaGlyLysPheValAspPheSerLeuSe : 390 !!!!:!!!:!!:!!||| !||||||||||||||||||.!. !!! !.!!||||||!: laIleThrLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAs 292478 : CCATAACGAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAA : 292534 391 : rThrPheSerThr >>>> Target Intron 4 >>>> ValLeuArgThrSerI : 400 !||||||.!!.!! 652 bp ||||||!:!:!!|||: nThrPheGlyAla++ ++ValLeuLysSerSerV 292535 : CACTTTTGGCGCTgt.........................agGTGCTGAAATCGTCGG : 293216 401 : leValTyrPheAsnLeuLeuArgThrValThr : 410 !!||||||.!.|||:!!||||||||||||||| alValTyrMetAsnMetLeuArgThrValThr 293217 : TAGTTTACATGAACATGCTACGAACCGTCACT : 293248 vulgar: CbirOr29 14 410 . KQ414889.1 289708 293248 + 938 M 257 771 S 0 2 5 0 2 I 0 651 3 0 2 S 1 1 M 33 99 5 0 2 I 0 128 3 0 2 M 37 111 5 0 2 I 0 909 3 0 2 M 52 156 5 0 2 I 0 648 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289709 293248 938 + . gene_id 1 ; sequence CbirOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 289709 290481 . + . KQ414889.1 exonerate:protein2genome:local exon 289709 290481 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 290482 290483 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 290482 291136 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 291135 291136 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 291137 291236 . + . KQ414889.1 exonerate:protein2genome:local exon 291137 291236 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291237 291238 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291237 291368 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 291367 291368 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292548 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292548 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 292549 292550 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 292549 293200 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 293199 293200 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 293201 293248 . + . KQ414889.1 exonerate:protein2genome:local exon 293201 293248 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289709 293248 938 + . alignment_id 1 ; Query CbirOr29 ; Align 289709 15 771 ; Align 291138 273 99 ; Align 291369 306 111 ; Align 292393 343 156 ; Align 293201 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 693 Query range: 14 -> 395 Target range: 303169 -> 305783 15 : AsnValHisHisGlnArgAspIleArgTyrAlaThrGlnLeuSerArgTrpIleLeuL : 34 |||:!!:!!:!!:!!!:!|||||| !|||!.!|||:!!! !|||!:!|||||||||| AsnLeuAsnTyrLysLysAspIleValTyrValThrLysHisSerLysTrpIleLeuL 303170 : AATTTGAATTACAAGAAAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCCTGA : 303227 35 : ysProIleGlyIleTrpHisLeuIleTyrAlaArgSerSerArgValGluLysLeuPh : 53 || !!:!!|||||||||! !:!:! ! !..!!!!:!! !! !! ||| ysSerLeuGlyIleTrpProAlaValLeuAspGluThrAlaGlyPhe------LeuPr 303228 : AGTCCCTTGGTATTTGGCCAGCCGTGTTGGACGAAACCGCAGGATTC------CTACC : 303278 54 : eSerValThrMetIlePheValCysPheAlaValLeuPhePheValLeuValProSer : 72 !.!:!!||| ||| :!! !! ! !||||||!!.|||..!:!!:!!|||!!! oLysIleThr---IleGlyLeuSerAsnLeuValLeuLeuPheThrValIleProCys 303279 : AAAAATCACC---ATTGGACTCAGTAATTTGGTTCTATTATTCACCGTGATACCGTGT : 303332 73 : SerProTyrValLeuPheSerLysAsnAsnIleSerThrLysAlaLysLeuLeuGlyP : 92 ! !! !:!!:!!:!!|||..!:!!!!.:!!! ! !! !!:! !||||||!!!|||! IleLeuHisIleIlePheGluGlnLysAspThrIleIleArgLeuLysLeuPheGlyL 303333 : ATTCTACACATAATATTCGAACAAAAGGATACGATAATAAGATTGAAACTATTCGGTC : 303392 93 : roValLeuPheCysLeuThrSerAlaValLysTyrTyrPheLeuGlyThrArgGlyGl : 111 !:!! !|||||||||! !||| !:!!||||||!:: !|||!.!|||||| ! euLeuSerPheCysLeuIleSerLeuMetLysTyrTrpAlaLeuAlaThrArgLysPr 303393 : TGCTGAGTTTCTGTTTGATCTCGTTGATGAAGTATTGGGCCCTCGCCACGCGGAAACC : 303449 112 : uMetIleGlyArgCysValAsnGlnMetGluAspAspTrpArgIleValArgTyrGln : 130 !! !||| !..!|||:!!.!.:!!:!!:!!..!||||||!:! |||!!! ! oArgIleLysGluCysIleGluGluValGlnSerAspTrpLysGluValSerValCys 303450 : AAGGATCAAAGAATGTATAGAAGAGGTGCAAAGTGATTGGAAAGAGGTGAGTGTTTGC : 303506 131 : AspHisArg >>>> Target Intron 1 >>>> LysMetMetLeuAspAsnAl : 140 !|||||| 938 bp :!!||||||||| ! !!!. IleHisArg++ --GluMetMetLeuLysTyrGl 303507 : ATTCATAgagt.........................gtGAAATGATGCTAAAATACGG : 304474 141 : aLeuValGlyArgArgLeuThrThrLeuSerValIlePheLeuTyrThrGlyGlyLeu : 159 !! !:!!||||||!.!||||||! !:!!!!!!.!||||||:!!|||||||||||| ! yGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThr 304475 : GCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACC : 304531 160 : SerTyrHisIleIleLeuProPheSerThrLysLysGlyLeuAsnAsn<->ThrPheT : 178 ! !||||||! :!!:!!! !|||:!!||| !! ! !:!!:!!.!. !.! !| IleTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgT 304532 : ATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTA : 304591 179 : hrAsnLysProLeuIleTyrGlnGlyTyrAspValTyrPheAspSerGlnAlaSerPr : 197 ||! !|||||||||:!!|||! !|||..!!.!! |||||| !|||.!!||||| hrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerPr 304592 : CGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCC : 304648 198 : oAlaTyrAspIleValPheSerValHisCysValSerAlaValIleGlnTyrAsnIle : 216 | !|||!!::!:|||!:!! !|||||||||:!!!!!!.! !:!! |||::!||| oIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIle 304649 : TATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATA : 304705 217 : ThrThrAlaAlaCysSerLeuAlaAlaIlePheValMetHisValCysGlyGlnValG : 236 |||.!!!.!||||||.!!|||||||||:!!|||!.!! |||!.!|||||||||:!!. ThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleA 304706 : ACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTG : 304765 237 : lnIleLeuMetThrMetLeuGlyAspLeuValGluGlyGluArgAspLysGlyThrSe : 255 !.|||:!!|||:!! |||||||||||||||.!..!!:!! :!!..!:!!.. spIleValMetSerArgLeuGlyAspLeuValAsnSerLys------GluSerSerAs 304766 : ATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAA------GAATCATCTGA : 304816 256 : rValGluGluArgLeuGlyValIleAlaArgTyrHisValArgValLeu{Ar} >>> : 272 !:!!!!::!!|||||| !! !|||!.!..!:!!|||:!!|||:!!|||{||} pLeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIleLeu{Ar}++ 304817 : TTTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTA{AG}gt... : 304871 273 : > Target Intron 2 >>>> {g}PheAlaValAspValGluGluValLeuArgG : 283 70 bp {|}|||:!!!.! |||:!! !||||||!:!| ++{g}PheSerAlaIleValGlnThrValLeuGlnG 304872 : ......................ag{A}TTCTCGGCAATAGTGCAAACAGTGTTGCAAG : 304970 284 : luMetCysLeuMetGluLeuValAlaAlaThrPheIleIleCysLeuLeuGluTyrTy : 302 ||:!:|||!!!:!!|||!!!:!!!.!:!!|||!!.:!:|||||||||||||||||||| luValCysPheLeuGluPheIleGlySerThrLeuLeuIleCysLeuLeuGluTyrTy 304971 : AAGTATGCTTCTTGGAATTCATTGGTTCTACCTTACTGATATGTCTACTTGAATACTA : 305027 303 : rIleMetThr >>>> Target Intron 3 >>>> GluTrpGluAsnSerAspV : 312 | !!!:||| 62 bp !!:||||||!:!|||:!!. rCysIleThr++ ++AspTrpGluSerSerAsnT 305028 : CTGTATAACGgt.........................agGATTGGGAGAGCAGTAATA : 305119 313 : alLeuGlyIleAlaThrTyrPheIleLeuPheIleSerLeuSerPheAsnPheLeuIl : 331 .!:!!.!!:!!.!!|||||| :!:|||.!.||||||:!!!!!||||||.!.!!!|| hrValSerLeuThrThrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIl 305120 : CCGTTAGTCTTACAACATATACAGTGTTACTGATATCTGTAACATTTAATATATTCAT : 305176 332 : ePheCysTyrIleGlyGluLeuLeuValGluGlu >>>> Target Intron 4 > : 343 |!!.|||||||||||||||:!!|||:!!|||:!! 413 bp eLeuCysTyrIleGlyGluIleLeuMetGluLys++ 305177 : ATTATGCTACATTGGTGAGATTCTTATGGAAAAGgt...................... : 305214 344 : >>> TyrSerLysIleAlaSerAlaValTyrGlyIleAsnTrpTyrAspLeuProGl : 360 !|||!..:!!!.!! !:!! !!:! !|||!:!|||||| !!|||||| ++SerSerSerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProTh 305215 : ...agAGCAGTAGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGAC : 305676 361 : yHisLysAlaLeuHisLeuValMetIleIleThrMetSerGlnTyrProProLysLeu : 379 ! ! ! ! !! ! !|||:!!:!:||||||.!!||||||... !!||| !!|||:!! rLysThrIleHisGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIle 305677 : TAAGACGATACATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATC : 305733 380 : ThrAlaGlyLysPheValAspPheSerLeuSerThrPheSerThrVal : 395 !:!||||||||| ! ||||||!!.|||||||||||||||.!!!.!||| SerAlaGlyLysValValAspLeuSerLeuSerThrPheGlyAsnVal 305734 : AGTGCTGGTAAAGTAGTTGATTTATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: CbirOr29 14 395 . KQ414889.1 303169 305783 + 693 M 35 105 G 2 0 M 5 15 G 1 0 M 76 228 5 0 2 I 0 934 3 0 2 M 42 126 G 0 3 M 74 222 G 2 0 M 20 60 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 37 111 5 0 2 I 0 409 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303170 305783 693 + . gene_id 2 ; sequence CbirOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303170 303517 . + . KQ414889.1 exonerate:protein2genome:local exon 303170 303517 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 303518 303519 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 303518 304455 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304454 304455 . + . intron_id 0 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local cds 304456 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304456 304868 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 2 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303170 305783 693 + . alignment_id 2 ; Query CbirOr29 ; Align 303170 15 105 ; Align 303275 52 15 ; Align 303290 58 228 ; Align 304456 134 126 ; Align 304585 176 222 ; Align 304807 252 60 ; Align 304940 273 99 ; Align 305101 306 111 ; Align 305625 343 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 637 Query range: 20 -> 410 Target range: 278567 -> 280551 21 : AspIleArgTyrAlaThrGlnLeuSerArgTrpIleLeuLysProIleGlyIleTrpH : 40 ||| ! !|||::!..!|||:!!!:!||||||.!!|||||||||||||||:!!|||! AspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpP 278568 : GATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGC : 278625 41 : isLeuIleTyrAlaArgSerSerArgValGluLysLeuPheSerValThrMetIlePh : 59 !|||! ! !..! !!!!!!! :!!||||||:!! !||||||..!:!: !! roLeuSerLeuCysValThrThr---LeuGluLysIleSerSerValValLeuAlaLe 278626 : CTCTCAGTCTCTGCGTGACCACC---TTGGAAAAGATCAGTTCCGTGGTCCTCGCGTT : 278679 60 : eValCysPheAlaValLeuPhePheValLeuValProSerSerProTyrValLeuPhe : 78 .:!! !!! ! !:!!:!! !|||:!!|||||||||!!!:!!! !! !..!:!!.!! uIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeu 278680 : AATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTC : 278736 79 : SerLys<->AsnAsnIleSerThrLysAlaLysLeuLeuGlyProValLeuPheCysL : 97 ..!||| ..!:!!:!!..!|||||| !|||:!!:!!||||||:!! !|||||| AspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysT 278737 : GACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCA : 278796 98 : euThrSerAlaValLysTyrTyrPheLeuGlyThrArgGlyGluMetIleGlyArgCy : 116 !! !:!!.!!:!!|||||||||.!!||| !:!!||||||! ! !||||||!:!|| hrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCy 278797 : CGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATG : 278853 117 : sValAsnGlnMetGluAspAspTrpArgIleVal<-><-><->ArgTyrGlnAspHis : 132 |||||||.!.!!:... |||||| !:!!..! ||| ::::::... sValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGlu 278854 : CGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggag : 278910 133 : ArgLysMetMetLeuAspAsnAlaLeuValGlyArgArgLeuThrThrLeuSerValI : 152 |||::::::||| !|||!:!||| !:!!|||||| !|||.!!! !!!!|||!.! ArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaG 278911 : agagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCG : 278970 153 : lePheLeuTyrThrGlyGlyLeuSerTyrHisIleIleLeuPro<->PheSerThrLy : 170 !|||:!!|||:!!||||||:!!! !||| ! !:!::!!||| |||:!!..!:: lyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValAr 278971 : GTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACG : 279027 171 : sLysGlyLeuAsnAsnThrPheThrAsnLysProLeuIleTyrGlnGlyTyrAspVal : 189 :! !! !:!!! !:!!!.! ||| !:! !!! ! !:!! ! !||| !! ! gThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGly 279028 : CACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGC : 279084 190 : TyrPheAspSerGlnAlaSerProAlaTyrAspIleValPheSerValHisCysValS : 209 !.!!||| !!!::.!!||||||:!!!:!!!:|||||| ! !:!!!!.|||:!!: LeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuA 279085 : CTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGG : 279144 210 : erAlaValIleGlnTyrAsnIleThrThrAlaAlaCysSerLeuAlaAlaIlePheVa : 228 !!||| !!:!! !|||::::!!|||..!!.!|||||||||||| !|||:!:||||| laAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheVa 279145 : CCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGT : 279201 229 : lMetHisValCysGlyGlnValGlnIleLeuMetThrMetLeuGlyAspLeuValGlu : 247 ||||||||||||||||||| !!::!||||||:!!|||! !|||! ! ! |||:!!!!: lMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAsp 279202 : CATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGAC : 279258 248 : GlyGluArg{A} >>>> Target Intron 1 >>>> {sp}LysGlyThrSerV : 256 |||! !!:!{|} 654 bp {||}::!|||.!! !!! GlyValLys{A}+- +-{sp}ArgGlyAlaProG 279259 : GGAGTGAAA{G}gg.........................aa{AT}CGAGGGGCTCCTG : 279939 257 : alGluGluArgLeuGlyValIleAlaArgTyrHisValArgValLeuArgPheAlaVa : 275 !..!.!.! !!!! !! ! !! ! !!! ||||||..! !:!!! !|||! !:! luArgAsnMetPheArgArgGlyAspTrpLeuHisValGluHisMetLeuPheAspIl 279940 : AACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGACAT : 279996 276 : lAspValGluGluValLeuArg<->GluMetCysLeuMetGluLeuValAlaAlaThr : 293 ! !! .!.! ! !||| !!::!:|||! !.!..!.:!!||| !|||! ! eLeuPheThrHisGlyAsnArgAspAspLeuCysTyrPheHisIleValMetAlaLys 279997 : ATTATTTACTCACGGTAACAGAGACGACTTATGTTATTTCCATATTGTAATGGCAAAA : 280053 294 : PheIleIleCysLeuLeuGluTyrTyrIleMetThrGluTrpGluAsnSerAspValL : 313 .!! !.!! !:!!! !..!! ! :!!.!. !|||||||||.!.!:!|||!.!: IleAlaPheValMetTyrSerLeuSerValPhe***GluTrpGluGlnAsnAspAlaI 280054 : ATTGCATTCGTCATGTACTCGTTGTCAGTTTTCTAGGAATGGGAGCAAAATGACGCTA : 280113 314 : euGlyIleAlaThrTyrPheIleLeuPheIleSerLeuSerPheAsnPheLeuIlePh : 332 !!|||! !||||||!!.!!:!!!.!!|||||||||!!!|||||| !!!!!|||.! leGlyThrPheThrTyrLeuMetPheLeuIleSerLeuThrPheAsnValPheIleLe 280114 : TAGGAACGTTCACGTATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACT : 280170 333 : eCysTyrIleGlyGluLeuLeuValGluGlu >>>> Target Intron 2 >>>> : 343 !|||||||||||||||:!!||| !|||::: 74 bp uCysTyrIleGlyGluIleLeuSerGluGln++ 280171 : CTGTTACATCGGTGAAATTCTCTCCGAACaggt......................... : 280205 344 : TyrSerLysIleAlaSerAlaValTyrGlyIleAsnTrpTyrAspLeuProGlyHi : 361 ! !! !|||:!!!.! !:!!..!||| !|||:!!|||||| !||||||||| ! ++CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLy 280206 : agTGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAA : 280331 362 : sLysAlaLeuHisLeuValMetIleIleThrMetSerGlnTyrProProLysLeuThr : 380 ||||||! ! !|||:!!:!!|||.!!.!!:!!|||.!.! ! !! !||||||||| sLysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThr 280332 : GAAAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACA : 280388 381 : AlaGlyLysPheValAspPheSerLeuSerThrPheSerThr >>>> Target In : 395 |||||||||.!!:!!|||.!!|||||||||!:!|||!!!!:! 71 b AlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSer++ 280389 : GCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt.............. : 280435 396 : tron 3 >>>> ValLeuArgThrSerIleValTyrPheAsnLeuLeuArgThrVal : 409 p ||||||!:!|||:!!.!!!.!|||.!.!:!||||||||||||:!! ++ValLeuLysThrAlaPheAlaTyrLeuSerLeuLeuArgThrLeu 280436 : ...........agGTGTTAAAAACGGCATTCGCATATCTGAGCTTATTACGTACGCTT : 280546 410 : Thr : 410 ||| Thr 280547 : ACC : 280551 vulgar: CbirOr29 20 410 . KQ414889.1 278567 280551 + 637 M 27 81 G 1 0 M 32 96 G 0 3 M 47 141 G 0 9 M 39 117 G 0 3 M 84 252 S 0 1 5 0 2 I 0 650 3 0 2 S 1 2 M 31 93 G 0 3 M 60 180 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278568 280551 637 + . gene_id 3 ; sequence CbirOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278568 279270 . + . KQ414889.1 exonerate:protein2genome:local exon 278568 279270 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 279271 279272 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local intron 279271 279924 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279923 279924 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 279925 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 279925 280202 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280551 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278568 280551 637 + . alignment_id 3 ; Query CbirOr29 ; Align 278568 21 81 ; Align 278649 49 96 ; Align 278748 81 141 ; Align 278898 128 117 ; Align 279018 167 252 ; Align 279927 252 93 ; Align 280023 283 180 ; Align 280277 343 156 ; Align 280504 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 531 Query range: 17 -> 341 Target range: 226912 -> 228355 18 : HisGlnArgAspIleArgTyrAlaThrGlnLeuSerArgTrpIleLeuLysProIleG : 37 :!!|||..! !!:!:!.! ::!! !||||||!:!||||||:!:|||||||||:!!| TyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuG 226913 : TATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCG : 226970 38 : lyIleTrpHisLeuIleTyrAlaArgSerSerArgValGluLysLeuPheSerValTh : 56 ||||||||! ! !!:!|||||||||:!!! !!:!! !|||||| ! lyIleTrpPro---SerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLe 226971 : GTATCTGGCCG---TCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTT : 227024 57 : rMetIlePheValCysPheAlaValLeuPhePheValLeuValProSerSerProTyr : 75 !||| !|||:!!|||!:!|||:!!:!! !|||! !|||||| !!|||.!! !||| uMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyr 227025 : GATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTAC : 227081 76 : ValLeuPheSerLysAsnAsnIleSerThrLysAlaLysLeuLeuGlyProValLeuP : 95 |||:!!.!...! !!!...! !! !!.!! ! !|||:!!:!!||||||:!!! !| ValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerP 227082 : GTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCT : 227141 96 : heCysLeuThrSerAlaValLysTyrTyrPheLeuGlyThrArgGlyGluMetIleGl : 114 ||! ! !! !||| !:!!||||||! !.!.||| ! !!.!! !!!: ||| hePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLe 227142 : TCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCT : 227198 115 : yArgCysValAsnGlnMetGluAspAspTrpArgIleValArgTyrGlnAspHisArg : 133 !..!||||||.!.!:!!!::!! ||||||!:!! !:!!||||||! !!!: !!||| uGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArg 227199 : CGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGA : 227255 134 : LysMetMetLeuAspAsnAlaLeuValGlyArgArgLeuThrThrLeuSerValIleP : 153 !!.:!!|||:!! !!|||! ! !||||||!:!|||! !|||:!!!!!..!.!!| AsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPheP 227256 : AACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTT : 227315 154 : heLeuTyrThrGlyGlyLeuSerTyrHisIleIleLeuProPheSerThrLysLysGl : 172 ||:!!!:!!::... ::: ::::::|||:!!:!!|||.!!!:!.!! !!..! heValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerVa 227316 : TCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGT : 227372 173 : yLeuAsnAsnThrPheThrAsnLys<-><->ProLeuIleTyrGlnGlyTyrAspVal : 189 ! !!...!. ! !.!:!!!.. ! !:!! !:!! ! ! ! :!! lAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIle 227373 : TGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATC : 227429 190 : TyrPheAspSerGlnAlaSerProAlaTyrAspIleValPheSerValHisCysValS : 209 ! !||| !!:: !|||||| ! !!!!:||| !!|||||||||!!.! !|||! IleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValT 227430 : ATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAA : 227489 210 : erAlaValIleGlnTyrAsnIleThrThrAlaAlaCysSerLeuAlaAlaIlePheVa : 228 !!!.!:!!:!: !:!!..!:!!|||:!!||||||||||||:!!||||||:!:.!!!. hrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAl 227490 : CAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGC : 227546 229 : lMetHisValCysGlyGlnValGlnIleLeuMetThrMetLeuGlyAspLeuValGlu : 247 !:!:|||!.!|||||||||:!!:!!:!:|||:!!:!! !|||||| !!|||:!!!!: aValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAsp 227547 : GGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGAC : 227603 248 : GlyGluArgAspLysGlyThrSerValGluGluArgLeuGlyValIleAlaArgTyrH : 267 |||..! !|||! !.!!! !!!!:!!!!:!!:|||:!!!.! !|||!.!! !:!!| GlyArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValThrHisH 227604 : GGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACC : 227663 268 : isValArgValLeu{Ar} >>>> Target Intron 1 >>>> {g}PheAlaVa : 275 ||||||||:!!|||{!.} 396 bp {!}||| !!. isValArgIleLeu{As}++ ++{n}PheLeuAl 227664 : ACGTTCGAATATTG{AA}gt.........................ag{C}TTTCTGGC : 228083 276 : lAspValGluGluValLeuArgGluMetCysLeuMetGluLeuValAlaAlaThrPhe : 294 ! !:!!|||:!!..!:!!!:!:!!!!:..!!!!:!:|||!!!:!!!.!..!|||.!. aLeuIleGluLysThrMetGlnGlnIleAlaPheValGluPheLeuGlyCysThrIle 228084 : CCTCATAGAGAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGTACAATA : 228140 295 : IleIleCysLeuLeuGluTyrTyrIleMetThr >>>> Target Intron 2 >> : 306 |||:!:||||||:!!||||||||||||!!:||| 72 bp IleLeuCysLeuIleGluTyrTyrIleIleThr++ 228141 : ATTCTGTGCCTCATCGAGTATTACATCATAACGgt....................... : 228178 307 : >> GluTrpGluAsnSerAspValLeuGlyIleAlaThrTyrPheIleLeuPheIle : 323 ||||||.!. !.!!!::!! ! ! !!.!||||||! |||.!!:!! ++GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeu 228179 : ..agGAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTA : 228299 324 : SerLeuSerPheAsnPheLeuIlePheCysTyrIleGlyGluLeuLeuValGlu : 341 |||!!!!::||||||......|||||||||||||||||||||:!!:!!!.!||| SerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGlu 228300 : TCCTTTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAA : 228355 vulgar: CbirOr29 17 341 . KQ414889.1 226912 228355 + 531 M 23 69 G 1 0 M 139 417 G 0 6 M 91 273 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226913 228355 531 + . gene_id 4 ; sequence CbirOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226913 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226913 227679 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228355 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228355 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226913 228355 531 + . alignment_id 4 ; Query CbirOr29 ; Align 226913 18 69 ; Align 226982 42 417 ; Align 227405 181 273 ; Align 228077 273 99 ; Align 228248 306 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 523 Query range: 173 -> 395 Target range: 300183 -> 302036 174 : AsnAsnThrPheThrAsnLysProLeuIleTyrGlnGlyTyrAspValTyrPheAspS : 193 !...!.!.!!:!||| !!||||||||| !|||! ||||||||| !!:!.!!|||! ArgGluAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspT 300184 : AGGGAGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATA : 300241 194 : erGlnAlaSerProAlaTyrAspIleValPheSerValHisCysValSerAlaValIl : 212 !!|||.!!||||||.!!|||!!:||||||||| |||||| !!:!!|||:!!|| hrGlnThrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIl 300242 : CACAAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGAT : 300298 213 : eGlnTyrAsnIleThrThrAlaAlaCysSerLeuAlaAlaIlePheValMetHisVal : 231 |..!||||||:!:||||||||||||! !|||||||||||||||||||||! |||:!! eMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIle 300299 : CATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATC : 300355 232 : CysGlyGlnValGlnIleLeuMetThrMetLeuGlyAspLeuValGluGlyGluArgA : 251 |||||||||:!!||||||! !|||.!!! |||! !|||||||||||| !! ! !!! CysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrGlyG 300356 : TGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGGGAG : 300415 252 : spLysGlyThrSerValGluGluArgLeuGlyValIleAlaArgTyrHisValArgVa : 270 !:|||! ! !.!! !!:! !|||! !||||||!.!||| !!||||||!:!|| luLysAspAspGly---ProAspProLeuValValIleValArgAspHisValLysVa 300416 : AGAAGGACGACGGT---CCTGATCCTTTGGTCGTTATCGTTCGAGATCACGTGAAGGT : 300469 271 : lLeu{Ar} >>>> Target Intron 1 >>>> {g}PheAlaValAspValGlu : 278 ||||{||} 140 bp {|}|||||| !:!!|||||| lLeu{Ar}++ ++{g}PheAlaLysAsnValGlu 300470 : TTTA{AG}gt.........................ag{A}TTTGCAAAGAACGTTGAG : 300633 279 : GluValLeuArgGluMetCysLeuMetGluLeuValAlaAlaThrPheIleIleCysL : 298 |||..!||||||!!:.!.||||||:!!|||:!! !!! !:!!|||.!.|||:!:|||| GluThrLeuArgAspPheCysLeuValGluIlePheGluSerThrLeuIleLeuCysL 300634 : GAAACTTTGCGTGACTTCTGCTTAGTGGAAATCTTCGAGTCCACGCTGATTTTGTGTT : 300693 299 : euLeuGluTyrTyrIleMetThr >>>> Target Intron 2 >>>> GluTrp : 307 |||||||||||||| !:!!..! 970 bp |||||| euLeuGluTyrTyrCysLeuVal++ ++GluTrp 300694 : TGCTCGAATACTACTGTTTGGTGgt.........................agGAATGG : 301690 308 : GluAsnSerAspValLeuGlyIleAlaThrTyrPheIleLeuPheIleSerLeuSerP : 327 :!!|||||||||..!:!!!.!!!: !|||!:!|||! !|||!!.! |||!!!!!!| GlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrP 301691 : CAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTT : 301750 328 : heAsnPheLeuIlePhe{Cy} >>>> Target Intron 3 >>>> {s}TyrIl : 335 |||||.!.!!!||||||{||} 89 bp {|}!:!|| heAsnIlePheIlePhe{Cy}-+ ++{s}PheIl 301751 : TCAATATATTCATATTC{TG}ct.........................ag{C}TTTAT : 301863 336 : eGlyGluLeuLeuValGluGluTyrSerLysIleAlaSerAlaValTyrGlyIleAsn : 354 ||||... !!: !!! !|||:!!|||!.!|||||| !|||! !|||:!! eGlyArg---------Asp***CysSerGlnIleGlySerAlaSerTyrGluIleAsp 301864 : TGGTCGT---------GATTAGTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGAT : 301911 355 : TrpTyrAspLeuProGlyHisLysAlaLeuHisLeuValMetIleIleThrMetSerG : 374 ||||||:!!||||||!.! ! !:!|||! ! !!|||:!!:!::!!! !..!!!:|||| TrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerG 301912 : TGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGC : 301971 375 : lnTyrProProLysLeuThrAlaGlyLysPheValAspPheSerLeuSerThrPheSe : 393 |||||||||||||||||||||||||||||.!.:!!|||!!.||||||!:!|||||||| lnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSe 301972 : AGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAG : 302028 394 : rThrVal : 395 |:!!||| rSerVal 302029 : CTCTGTA : 302036 vulgar: CbirOr29 173 395 . KQ414889.1 300183 302036 + 523 M 82 246 G 1 0 M 15 45 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 33 99 5 0 2 I 0 966 3 0 2 M 27 81 S 0 2 5 0 2 I 0 85 3 0 2 S 1 1 M 4 12 G 3 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300184 302036 523 + . gene_id 5 ; sequence CbirOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300184 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300184 300476 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 300616 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300615 300616 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300617 300716 . + . KQ414889.1 exonerate:protein2genome:local exon 300617 300716 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300717 300718 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300717 301686 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301685 301686 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301687 301769 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301769 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301770 301771 . + . intron_id 3 ; splice_site "CT" KQ414889.1 exonerate:protein2genome:local intron 301770 301858 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 301857 301858 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301859 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301859 302036 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 300184 302036 523 + . alignment_id 5 ; Query CbirOr29 ; Align 300184 174 246 ; Align 300430 257 45 ; Align 300618 273 99 ; Align 301687 306 81 ; Align 301860 334 12 ; Align 301872 341 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 457 Query range: 17 -> 273 Target range: 221360 -> 222131 18 : HisGlnArgAspIleArgTyrAlaThrGlnLeuSerArgTrpIleLeuLysProIleG : 37 :!!:!!! !:!!:!:!:!! ::!..!||||||||||||||||||||||||||||||| TyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleG 221361 : TACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCG : 221418 38 : lyIleTrpHisLeuIleTyrAlaArgSerSerArgValGluLysLeuPheSerValTh : 56 ||:!!|||! ! !! |||!.!! !|||! !||||||!:!! !.!!! ! ! lyValTrpPro---AsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLe 221419 : GTGTTTGGCCA---AATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 57 : rMetIlePheValCysPheAlaValLeuPhePheValLeuValProSerSerProTyr : 75 !!!:! ! !!||||||!:!::!:!!:!! |||:!!|||||||||!!!|||! !||| uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 76 : ValLeuPheSerLysAsnAsnIleSerThrLysAlaLysLeuLeuGlyProValLeuP : 95 |||:!!.!!..! !.!.:!!:!!! !!.!!:! !|||||||||||||||:!! !| ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 96 : heCysLeuThrSerAlaValLysTyrTyrPheLeuGlyThrArgGlyGluMetIleGl : 114 |||||:!!! !:!! !:!!||||||:!!.!.||| ! ! !! !.!. ||| ! heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 115 : yArgCysValAsnGlnMetGluAspAspTrpArgIleValArgTyrGlnAspHisArg : 133 !..!|||:!!.!.!::!!:||| ||||||!:!! !:!!! !|||... ! !!!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 134 : LysMetMetLeuAspAsnAlaLeuValGlyArgArgLeuThrThrLeuSerValIleP : 153 ! !!:|||:!!!!:||||||:!! !!||||||||||||! !! !:!!!!!..!.!!| AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 154 : heLeuTyrThrGlyGlyLeuSerTyrHisIleIleLeuProPheSerThrLysLys<- : 172 ||:!!|||!:!||| ::: |||:::||| !:!!|||||||||..! ||| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 173 : ><->GlyLeuAsnAsnThrPheThrAsnLysProLeuIleTyrGlnGlyTyrAspVal : 189 !.!! !:!! ... ||| |||:!!:!:!:!! !! !! eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 190 : TyrPheAspSerGlnAlaSerProAlaTyrAspIleValPheSerValHisCysValS : 209 ! !!|||!!!!:! !||||||!.! !!!!:|||:!!||||||:!!!!. !:!!: IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 210 : erAlaValIleGlnTyrAsnIleThrThrAlaAlaCysSerLeuAlaAlaIlePheVa : 228 !!!.!!.!:!:..!:!!!:!||||||:!!|||||||||||||||!.!|||!!:|||!. laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 229 : lMetHisValCysGlyGlnValGlnIleLeuMetThrMetLeuGlyAspLeuValGlu : 247 !:!!|||!.!|||||||||:!!|||:!:||||||!:! !||| ! !!|||:!!.!. aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 248 : GlyGluArgAspLysGlyThrSerValGluGluArgLeuGlyValIleAlaArgTyrH : 267 |||..! !|||! ! !!!.!!:!|||!!:..!|||:!!!.! !|||!.!!.! ! | GlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnH 222052 : GGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAAC : 222111 268 : isValArgValLeuArgPhe : 273 ||||||||:!!|||!:!!:! isValArgIleLeuGlnTyr 222112 : ACGTTCGAATATTGCAGTAT : 222131 vulgar: CbirOr29 17 273 . KQ414889.1 221360 222131 + 457 M 23 69 G 1 0 M 130 390 G 0 6 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221361 222131 457 + . gene_id 6 ; sequence CbirOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221361 222131 . + . KQ414889.1 exonerate:protein2genome:local exon 221361 222131 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221361 222131 457 + . alignment_id 6 ; Query CbirOr29 ; Align 221361 18 69 ; Align 221430 42 390 ; Align 221826 172 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 443 Query range: 6 -> 403 Target range: 256601 -> 258648 7 : LeuAlaAsnLysIleGlnValTyrAsnValHisHisGlnArgAspIleArgTyrAlaT : 26 :!!.!!|||:!!.!! ||| !!...!:!! !:!!!!! !!! ! !|||::! MetThrAsnGluPheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerL 256602 : ATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTC : 256659 27 : hrGlnLeuSerArgTrpIleLeuLysProIleGlyIleTrpHisLeuIleTyrAlaAr : 45 !||||||!:!||||||.!!||||||||||||||| !|||! !! :!! euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpPro---ProSerSerSe 256660 : TCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCA---CCCTCGTCGTC : 256713 46 : gSerSerArgValGluLysLeuPheSerValThrMetIlePheValCysPheAlaVal : 64 !!!!!!!! !:!!|||::! ! !!|||:!!..!:!!! !.!!||||||!:!!.! ! rThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGlySer 256714 : CACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCT : 256770 65 : LeuPhePheValLeuValProSerSerProTyrValLeuPheSerLysAsnAsnIleS : 84 :!!!!.|||..!|||:!!|||!!!! !! !:!!|||!!!.!!..! ! :!!!:!.!!! IleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSerPheT 256771 : ATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCT : 256830 85 : erThrLysAlaLysLeuLeuGlyProValLeuPheCysLeuThrSerAlaValLysTy : 103 |||...||| ...||||||:!! ! !!! :!!! !|||..!!.!!!.|| yrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTy 256831 : AcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTA : 256887 104 : rTyrPheLeuGlyThrArgGlyGluMetIleGlyArgCysValAsnGlnMetGluAsp : 122 | !!.||| ! !!:!|||:!! ||| !! !||||||.!.!!.!!:||| rThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGluThr 256888 : CACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACG : 256944 123 : AspTrpArgIleValArgTyrGlnAspHisArgLysMetMetLeuAspAsnAlaLeuV : 142 |||||||||!!:|||||| :!! ! !!!:!:!!:!!|||:!! ! |||||| ! AspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgP 256945 : GATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGAT : 257004 143 : alGlyArgArgLeuThrThrLeuSerValIlePheLeuTyrThrGlyGlyLeuSerTy : 161 !!|||||| !:!!.!!|||!!!!!!!.! !.!!:!! ! !:!||| ... :: heGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPh 257005 : TCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgttt : 257061 162 : rHisIleIleLeuProPheSerThrLys<-><->LysGlyLeuAsnAsnThrPheThr : 178 : ::: ! ! !!.!.!:!|||:!! ! ! ! !|||.!.||| ! ! ePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIle 257062 : cttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATC : 257118 179 : AsnLysProLeuIleTyrGlnGlyTyrAspValTyrPheAspSerGlnAlaSerProA : 198 ::! !||| ! ! ! !||| ! ! !!.:!! !.!. !||||||. ValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProT 257119 : GTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTA : 257178 199 : laTyrAspIleValPheSerValHisCysValSerAlaValIleGlnTyrAsnIleTh : 217 !! !!!!:|||||| !!! !:!!!!. ! !|||:!!:!!||| ! !!.!! !|| hrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerTh 257179 : CGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTAC : 257235 218 : rThrAlaAlaCysSerLeuAlaAlaIlePheValMetHisValCysGlyGlnValGln : 236 |..!::! !! !||||||||||||:!!|||!.!! |||!.!! !||||||:!! rValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThr 257236 : AGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACT : 257292 237 : IleLeuMetThrMetLeuGlyAspLeuValGluGlyGluArgAspLys<->GlyThrS : 255 :!:||||||:!! !:!! !!!:!!!|||.!.! !..!|||:!!::: ||| ValLeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLysThrP 257293 : GTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgt : 257352 256 : erValGluGluArgLeuGlyValIleAlaArgTyrHisValArgValLeuArgPheAl : 274 :!!!:!:!!|||||||||!.!..!:!!|||:!!||||||||||||! ! heProPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeuArg***As 257353 : ttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTGAGGTAAGA : 257409 275 : aValAspValGluGluValLeuArgGluMetCysLeuMetGluLeuValAlaAlaThr : 293 ! !! !:!! ...|||:!! !!.!..!. !:!:...:!!:!! ! !.!! pPheCysIleIleSerValValTrpAsnPheGluArgValSerValIleIlePheAla 257410 : TTTTTGCATTATTTCCGTTGTGTGGAATTTCGAAAGGGTTTCTGTGATTATTTTTGCG : 257466 294 : {P} >>>> Target Intron 1 >>>> {he}IleIleCysLeuLeuGluTyrT : 302 {!} 763 bp {:!}! :::::: |||| {T}++ +-{yr}SerTyrSerValIlePheTyrT 257467 : {T}gt.........................ac{AC}AGctattctgttattttttatt : 258256 303 : yrIleMetThrGluTrpGluAsnSerAspValLeuGlyIleAlaThrTyrPheIleLe : 321 ||...... ||||||...!.....|||::: ...:::::::::||||||!!::! yrPheGln---GluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheMetIl 258257 : attttcag---gaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTATGAT : 258310 322 : uPheIleSerLeuSerPheAsnPheLeuIlePheCysTyrIleGlyGluLeuLeuVal : 340 !.!!||||||||||||||||||......:::...|||||||||||||||:!!|||..! eLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThr 258311 : ACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATTAACA : 258367 341 : GluGlu >>>> Target Intron 2 >>>> TyrSerLysIleAlaSerAlaVa : 350 |||:!! 90 bp ! !!.!|||:!!!.!..!!.!|| GluGln++ ++CysLysLysValGlyAspValVa 258368 : GAACAGgt.........................agTGCAAGAAAGTTGGCGACGTGGT : 258487 351 : lTyrGlyIleAsnTrpTyrAspLeuProGlyHisLysAlaLeuHisLeuValMetIle : 369 |||| !! !:!!|||||| !!||||||! ! ! !:! !||| !!|||:!!:!!:!! lTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLeuVal 258488 : TTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTTGGTA : 258544 370 : IleThrMetSerGlnTyrProProLysLeuThrAlaGlyLysPheValAspPheSerL : 389 |||.!! |||... ! !:!!:!!||||||||||||||| ...|||: IleAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePheHisMetSerI 258545 : ATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatGTCCA : 258604 390 : euSerThrPheSerThrValLeuArgThrSerIleValTyrPhe : 403 !!! !||||||||| !||| ! ! ! !!:!::!! !!:! leTyrThrPheSerAspValSerTyrLeuArgLeuIleIleTyr 258605 : TTTACACATTCAGCGATGTGAGTTATCTTCGTTTGATTATTTAT : 258648 vulgar: CbirOr29 6 403 . KQ414889.1 256601 258648 + 443 M 34 102 G 1 0 M 129 387 G 0 6 M 82 246 G 0 3 M 41 123 S 0 1 5 0 2 I 0 759 3 0 2 S 1 2 M 10 30 G 1 0 M 37 111 5 0 2 I 0 86 3 0 2 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256602 258648 443 + . gene_id 7 ; sequence CbirOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256602 257469 . + . KQ414889.1 exonerate:protein2genome:local exon 256602 257469 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 257470 257471 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257470 258232 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258231 258232 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 258233 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258233 258375 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258648 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256602 258648 443 + . alignment_id 7 ; Query CbirOr29 ; Align 256602 7 102 ; Align 256704 42 387 ; Align 257097 171 246 ; Align 257346 253 123 ; Align 258235 295 30 ; Align 258265 306 111 ; Align 258466 343 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 438 Query range: 14 -> 272 Target range: 217147 -> 217924 15 : AsnValHisHisGlnArgAspIleArgTyrAlaThrGlnLeuSerArgTrpIleLeuL : 34 :!! !.!.::::::::::::|||... ::!! !|||! !!:!||||||:!:|||| AspTyrGluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuL 217148 : GACTACGAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGA : 217205 35 : ysProIleGlyIleTrpHisLeuIleTyrAlaArgSerSerArgValGluLysLeuPh : 53 |||||!!:|||:!!|||! ! !! !! !!!!!!!||| !..!|||:!!.! ysProMetGlyLeuTrpPro---AsnSerArgThrThrThrArgSerArgLysIleLe 217206 : AACCGATGGGTCTTTGGCCA---AACTCACGTACCACCACCAGATCCCGAAAAATCCT : 217259 54 : eSerValThrMetIlePheValCysPheAlaValLeuPhePheValLeuValProSer : 72 !! ! ! !!!:! ! !:!!|||!:!!.!:!!:!! !|||:!!!!!||||||!!! uTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCys 217260 : CTACAAACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGC : 217316 73 : SerProTyrValLeuPheSerLysAsnAsnIleSerThrLysAlaLysLeuLeuGlyP : 92 ||| !||||||!!!.!!..! .!.:!!:!!! ! !||| !||||||!!!|||| SerMetTyrValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyP 217317 : TCCATGTACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTC : 217376 93 : roValLeuPheCysLeuThrSerAlaValLysTyrTyrPheLeuGlyThrArgGlyGl : 111 ||:!!:!!||||||:!!! !:!! !||||||||||||! !||| !..!!.! !! roLeuIlePheCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAl 217377 : CGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGC : 217433 112 : uMetIleGlyArgCysValAsnGlnMetGluAspAspTrpArgIleValArgTyrGln : 130 ! ||| !!..!||||||!..::!!!:||| |||||||||! !||||||! !:!! aAspIleArgGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGlu 217434 : GGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAG : 217490 131 : AspHisArgLysMetMetLeuAspAsnAlaLeuValGlyArgArgLeuThrThrLeuS : 150 ! !!|||:!! !|||:!!! |||||| ! !!||||||!:!|||..! !|||! LysAspArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuC 217491 : AAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCT : 217550 151 : erValIlePheLeuTyrThrGlyGlyLeuSerTyrHisIleIleLeuProPheSerTh : 169 !!..!.!!|||:!!|||!:!||| ::: |||:::||| !:!!|||.!!|||.. ysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerVa 217551 : GTACCTTCTTCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGT : 217607 170 : rLysLysGlyLeu<-><->AsnAsnThrPheThrAsnLysProLeuIleTyrGlnGly : 186 ! !!:! !||| |||...!.!.!!||| !! ||||||:!:!:!! ! lGlyArgIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPhe 217608 : GGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTT : 217664 187 : TyrAspValTyrPheAspSerGlnAlaSerProAlaTyrAspIleValPheSerValH : 206 ! ! !.!!|||!!!!:: !!!!|||.!! !!!!:|||||||||! !:!!! ThrLysTyrIleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuG 217665 : ACGAAGTATATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTC : 217724 207 : isCysValSerAlaValIleGlnTyrAsnIleThrThrAlaAlaCysSerLeuAlaAl : 225 !.! :!!:!!!.!!.!:!:..!:!!...||||||:!!|||||||||||||||||||| lnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAl 217725 : AATTGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGC : 217781 226 : aIlePheValMetHisValCysGlyGlnValGlnIleLeuMetThrMetLeuGlyAsp : 244 | !|||!.!:!:|||!.!|||||||||:!!:!!:!:||||||!.! !||| ! !! aAlaPheAlaValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHis 217782 : AGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACAT : 217838 245 : LeuValGluGlyGluArgAspLysGlyThrSerValGluGluArgLeuGlyValIleA : 264 |||:!!!!:|||..! !|||! !.!! !!!!|||!!:! |||:!!!.! !|||! LeuIleAspGlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleV 217839 : TTAATCGACGGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCG : 217898 265 : laArgTyrHisValArgValLeuArg : 272 .!!!! ! |||||||||:!!|||!:! alSerGlnHisValArgIleLeuLys 217899 : TCAGTCAACACGTTCGGATATTAAAG : 217924 vulgar: CbirOr29 14 272 . KQ414889.1 217147 217924 + 438 M 26 78 G 1 0 M 132 396 G 0 6 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217148 217924 438 + . gene_id 8 ; sequence CbirOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217148 217924 . + . KQ414889.1 exonerate:protein2genome:local exon 217148 217924 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217148 217924 438 + . alignment_id 8 ; Query CbirOr29 ; Align 217148 15 78 ; Align 217226 42 396 ; Align 217628 174 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 410 Query range: 20 -> 271 Target range: 284514 -> 285285 21 : AspIleArgTyrAlaThrGlnLeuSerArgTrpIleLeuLysProIleGlyIleTrpH : 40 ||| ! !|||::!..!|||:!!!:!||||||.!!|||||||||||||||:!!|||! AspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpP 284515 : GATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGC : 284572 41 : isLeuIleTyrAlaArgSerSerArgValGluLysLeuPheSerValThrMetIlePh : 59 !|||! ! !..! !!!!!!! :!!||||||:!! !||||||..!:!: !! roLeuSerLeuCysValThrThr---LeuGluLysIleSerSerValValLeuAlaLe 284573 : CTCTCAGTCTCTGCGTGACCACC---TTGGAAAAGATCAGTTCCGTGGTCCTCGCGTT : 284626 60 : eValCysPheAlaValLeuPhePheValLeuValProSerSerProTyrValLeuPhe : 78 .:!! !!! ! !:!!:!! !|||:!!|||||||||!!!:!!! !! !..!:!!.!! uIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeu 284627 : AATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTC : 284683 79 : SerLys<->AsnAsnIleSerThrLysAlaLysLeuLeuGlyProValLeuPheCysL : 97 ..!||| ..!:!!:!!..!|||||| !|||:!!:!!||||||:!! !||||||: AspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysM 284684 : GACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCA : 284743 98 : euThrSerAlaValLysTyrTyrPheLeuGlyThrArgGlyGluMetIleGlyArgCy : 116 !!! !:!!|||:!!|||||||||.!!||| !:!!||||||! ! !||||||!:!|| etMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCy 284744 : TGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATG : 284800 117 : sValAsnGlnMetGluAspAspTrpArgIleVal<-><-><->ArgTyrGlnAspHis : 132 ||||!!..!.!!:...! |||||| !:!!..! !! ::::::... sValLysAspIleArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGlu 284801 : CGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggag : 284857 133 : ArgLysMetMetLeuAspAsnAlaLeuValGlyArgArgLeuThrThrLeuSerValI : 152 |||::::::||| !|||!:!||| !:!!|||||| !|||.!!! !!!!!!!!.! ArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaG 284858 : agagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCG : 284917 153 : lePheLeuTyrThrGlyGlyLeuSerTyrHisIleIleLeuProPheSerThr<->Ly : 170 !|||:!!|||:!!||||||!!!! !||| !! :!::!!|||!!.!!!||| :: lyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysThrValAr 284918 : GTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACG : 284974 171 : sLysGlyLeuAsnAsnThrPheThrAsnLysProLeuIleTyrGlnGlyTyrAspVal : 189 :! !! !:!!! !:!!!.! ||| !:! !!! ! !:!! ! !||| !! ! gThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGly 284975 : CACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGC : 285031 190 : TyrPheAspSerGlnAlaSerProAlaTyrAspIleValPheSerValHisCysValS : 209 !.!!||| !!!::.!!||||||:!!!:!!!:|||||| ! !:!!!!.|||:!!: LeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuA 285032 : CTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGG : 285091 210 : erAlaValIleGlnTyrAsnIleThrThrAlaAlaCysSerLeuAlaAlaIlePheVa : 228 !!||| !!:!! !|||::::!!|||..!!.!||||||||||||||||||:!:||||| laAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheVa 285092 : CCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGT : 285148 229 : lMetHisValCysGlyGlnValGlnIleLeuMetThrMetLeuGlyAspLeuValGlu : 247 ||||||||||||||||||| !!::!||||||:!!|||! !|||! ! ! ||||||!!: lMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAsp 285149 : CATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGAC : 285205 248 : GlyGluArgAsp<->LysGlyThrSerVal<->GluGluArgLeuGlyValIleAlaA : 265 |||! !!:!! |||||| !|||..! |||:!!|||||||||! !||| !. GlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleG 285206 : GGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCG : 285265 266 : rgTyrHisValArgValLeu : 271 .!:!!|||:!!!:!:!!||| luHisHisLeuLysIleLeu 285266 : AGCATCATCTGAAGATACTG : 285285 vulgar: CbirOr29 20 271 . KQ414889.1 284514 285285 + 410 M 27 81 G 1 0 M 32 96 G 0 3 M 47 141 G 0 9 M 42 126 G 0 3 M 82 246 G 0 3 M 5 15 G 0 3 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284515 285285 410 + . gene_id 9 ; sequence CbirOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284515 285285 . + . KQ414889.1 exonerate:protein2genome:local exon 284515 285285 . + . insertions 21 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284515 285285 410 + . alignment_id 9 ; Query CbirOr29 ; Align 284515 21 81 ; Align 284596 49 96 ; Align 284695 81 141 ; Align 284845 128 126 ; Align 284974 170 246 ; Align 285223 252 15 ; Align 285241 257 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 395 Query range: 23 -> 347 Target range: 259772 -> 261859 24 : TyrAlaThrGlnLeuSerArgTrpIleLeuLysProIleGlyIleTrpHisLeuIleT : 43 |||::! !|||!!!!:!||||||.!!||||||||||||||| !|||! !! TyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpPro---ProS 259773 : TATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCA---CCTT : 259827 44 : yrAlaArgSerSerArgValGluLysLeuPheSerValThrMetIlePheValCysPh : 62 :!! !!!!!!!|||:!!||||||:!!.!!||||||! !:!!||||||:!!|||!: erSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTy 259828 : CATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTA : 259884 63 : eAlaValLeuPhePheValLeuValProSerSerProTyrValLeuPheSerLysAsn : 81 !::!..!:!!.!. !!..!|||:!!|||!!! !! !:!!:!!|||.!!..!|||.!. rSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGlu 259885 : CAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAG : 259941 82 : AsnIleSerThrLysAlaLysLeuLeuGlyProValLeuPheCysLeuThrSerAlaV : 101 !:!:!:! !! !|||.!!|||:!!|||||||||:!! ! !!! !!!..!.!!..!: SerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysI 259942 : AGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTA : 260001 102 : alLysTyrTyrPheLeuGlyThrArgGlyGluMetIleGlyArgCysValAsnGlnMe : 120 !!!!.||| ||| ! !||||||..! ||| !!!!||||||.!.!!.:! leAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisVa 260002 : TTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGT : 260058 121 : tGluAspAspTrpArgIleValArgTyrGlnAspHisArgLysMetMetLeuAspAsn : 139 !|||:!!||||||||||||:!!! ! :!! ! !!!:!!!.:!!|||||| !! lGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyr 260059 : GGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATAC : 260115 140 : AlaLeuValGlyArgArgLeuThrThrLeuSerValIlePheLeuTyrThrGlyGlyL : 159 ||| ! !!|||||| !:!!.!!.!!! !!!!!.! !|||:!! ! !|||! !| AlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValL 260116 : GCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTC : 260175 160 : euSerTyrHisIleIleLeuProPheSerThrLys<-><->LysGlyLeuAsnAsnTh : 176 ||!!!!:! !:!::!! ! !!!.||||||:!! :!!! ! !|||.!.|| euCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluTh 260176 : TGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGAC : 260232 177 : rPheThrAsnLysProLeuIleTyrGlnGlyTyrAspValTyrPheAspSerGlnAla : 195 | ! ! ! ! ! !||| ! ! !! !||| ! ! ! .!.:!! !.!.! ! rArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAsp 260233 : GAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGAC : 260289 196 : SerProAlaTyrAspIleValPheSerValHisCysValSerAlaValIleGlnTyrA : 215 |||||| ! !!!!:||||||.!! !|||!!.! !||||||!.! !!||| ! !!: SerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnS 260290 : AGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATT : 260349 216 : snIleThrThrAlaAlaCysSerLeuAlaAlaIlePheValMetHisValCysGlyGl : 234 ::! !|||..!!.! !! !||||||||||||:!!.!...! |||!.!|||||||| erSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGl 260350 : CGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCA : 260406 235 : nValGlnIleLeuMetThrMetLeuGlyAspLeuValGluGlyGluArgAsp<->Lys : 252 |:!!.!.:!:|||||| ! !:!! !!!:!!!|||!!:! !..!|||:!! ||| nLeuAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLys 260407 : GTTGAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAG : 260463 253 : GlyThrSerValGluGluArgLeuGlyValIleAlaArgTyrHisValArgValLeuA : 272 !! !:!! ! :!!..!:!!|||||||||!.!..!:!!|||:!!|||!.!|||! LysLysAlaProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeuT 260464 : AAAAAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTCA : 260523 273 : rgPheAlaValAspValGluGluValLeuArgGluMetCysLeuMetGluLeuValAl : 291 !! ! !:!! !! ! !!:!!||| !!! ! !!!!!!: !|||!. hr***AspLeuPheAspIleThrPheValArg***ArgIlePheIleIleThrValGl 260524 : CGTAAGATTTGTTTGATATTACTTTTGTACGATAAAGGATTTTTATAATTACGGTAGG : 260580 292 : aAlaThrPheIleIleCysLeu{Le} >>>> Target Intron 1 >>>> {u} : 299 !:!!|||...||| |||{:!} 1109 bp {!} ySerThrIleIle***LysLeu{Il}++ -+{e} 260581 : ATCTactataatttgaaaatta{at}gt.........................tg{a} : 261715 300 : GluTyrTyrIleMetThrGluTrpGluAsnSerAspValLeuGlyIleAlaThrTyrP : 319 :::::::::::: ||||||! .!...!|||:!!! !..!:!::!!||||||| TyrPhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrP 261716 : tatttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATT : 261773 320 : heIleLeuPheIleSerLeuSerPheAsnPheLeuIlePheCysTyrIleGlyGluLe : 338 ||!!::!!.!.|||:!!:!!!!!|||||| ! !!!|||.!!|||||||||||||||:! heMetMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIl 261774 : TCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAAT : 261830 339 : uLeuValGluGluTyrSerLysIleAla : 347 !|||..!|||:!! ..! ! :!:||| eLeuThrGluGlnValGlnHisLeuAla 261831 : ACTAACGGAACAGGTACAACATTTGGca : 261859 vulgar: CbirOr29 23 347 . KQ414889.1 259772 261859 + 395 M 17 51 G 1 0 M 129 387 G 0 6 M 81 243 G 0 3 M 47 141 S 0 2 5 0 2 I 0 1105 3 0 2 S 1 1 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259773 261859 395 + . gene_id 10 ; sequence CbirOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259773 260605 . + . KQ414889.1 exonerate:protein2genome:local exon 259773 260605 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 260606 260607 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 260606 261714 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261713 261714 . + . intron_id 0 ; splice_site "tg" KQ414889.1 exonerate:protein2genome:local cds 261715 261859 . + . KQ414889.1 exonerate:protein2genome:local exon 261715 261859 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259773 261859 395 + . alignment_id 10 ; Query CbirOr29 ; Align 259773 24 51 ; Align 259824 42 387 ; Align 260217 171 243 ; Align 260463 252 141 ; Align 261716 300 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 394 Query range: 8 -> 273 Target range: 212827 -> 213625 9 : AsnLysIleGlnValTyrAsnValHisHisGlnArgAspIleArgTyrAlaThrGlnL : 28 .!.|||:!:|||||| ! :!! ! !:!!:!!!:! :::... ::: !! GluLysLeuGlnValGluAspCysThrTyrGluLysArgValAsnLeuSerIleProT 212828 : GAGAAATTGCAGGTCGAAGACTGTACCTACGAGAAACGtgtaaatttaagtatacCGT : 212885 29 : euSerArgTrpIleLeuLysProIleGlyIleTrpHisLeuIleTyrAlaArgSerSe : 47 !!:!||||||:!!|||||||||! |||:!:|||! ! ! ! :!! ! !|| rpAsnArgTrpLeuLeuLysProThrGlyLeuTrpPro---AspLysSerTyrValSe 212886 : GGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCC---GACAAGTCCTACGTTTC : 212939 48 : rArgValGluLysLeuPheSerValThrMetIlePheValCysPheAlaValLeuPhe : 66 |! !:!!|||||| !.!!:!! ! !:!:! ! !||||||!:!!.!:!!:!! ! rProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLeuIleGly 212940 : ACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGT : 212996 67 : PheValLeuValProSerSerProTyrValLeuPheSerLysAsnAsnIleSerThrL : 86 !:!:!!:!!:!!|||!!!||| !||||||!!!.!!..! !...|||||| : TyrLeuValIleProCysSerLeuTyrValPheLeuAspValGluAsnIlePheLysG 212997 : TACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaag : 213056 87 : ysAlaLysLeuLeuGlyProValLeuPheCysLeuThrSerAlaValLysTyrTyrPh : 105 :: !:!!|||!!!||| ! !! !||||||:!!.!!:!! ! !||||||:!!! luIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSe 213057 : agaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTC : 213113 106 : eLeuGlyThrArgGlyGluMetIleGlyArgCysValAsnGlnMetGluAspAspTrp : 124 ||| ! !!.!|||!!: ||| !!! !||||||.!.!!.|||:!! !!|||||| rLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMetLysTyrAspTrp 213114 : GTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGG : 213170 125 : ArgIleValArgTyrGlnAspHisArgLysMetMetLeuAspAsnAlaLeuValGlyA : 144 !:!! !:!!! !:!!:!!!!: !!!:!:!!!!:||| ! |||||| ! !!|||! LysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyL 213171 : AAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAA : 213230 145 : rgArgLeuThrThrLeuSerValIlePheLeuTyrThrGlyGlyLeuSerTyrHisIl : 163 :!|||:!!..!|||:!!!!!!.!.!!|||:!!||||||||| ! !! !||| !:! ysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLe 213231 : AGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCT : 213287 164 : eIleLeuProPheSerThrLysLysGlyLeu<-><->AsnAsnThrPheThrAsnLys : 180 !:!!:!!|||.!!|||.!! ! ||| !:!! :!! !!.! ! ||| !!:! uValValProIleSerAlaAspLysMetValAlaGluAspLeuAsnValThrPheArg 213288 : CGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGA : 213344 181 : ProLeuIleTyrGlnGlyTyrAspValTyrPheAspSerGlnAlaSerProAlaTyrA : 200 ! !:!!:!: !! ! !! !! ! !!||| !!:! !||||||!.! !!! GlnMetValValProValSerArgPheIleValAspValArgTyrSerProValAsnG 213345 : CAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACG : 213404 201 : spIleValPheSerValHisCysValSerAlaValIleGlnTyrAsnIleThrThrAl : 219 !:||| !!|||! !:!!!!. !:!!:!!!.!|||:!: :!! !|||.!!..!!. luIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValVa 213405 : AGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGT : 213461 220 : aAlaCysSerLeuAlaAlaIlePheValMetHisValCysGlyGlnValGlnIleLeu : 238 !||||||||||||||||||:!:|||!.!:!:|||!.!|||||||||:!! |||||| lAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeu 213462 : AGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTG : 213518 239 : MetThrMetLeuGlyAspLeuValGluGlyGluArgAspLysGlyThrSerValGluG : 258 |||!:! !|||! ! !!|||:!!!!:|||..!..!|||! !.!!! !!:!|||!!:! MetSerTrpLeuGluHisLeuIleAspGlyArgGluAspMetSerLysAsnValAspA 213519 : ATGAGCTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGCAAGAATGTGGACG : 213578 259 : luArgLeuGlyValIleAlaArgTyrHisValArgValLeuArgPhe : 273 !:|||:!!!.!||||||!.!!.! ! |||||||||:!!|||!:!!:: spArgIleAlaValIleValAsnGlnHisValArgIleLeuLysTrp 213579 : ACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTGAAGTGG : 213625 vulgar: CbirOr29 8 273 . KQ414889.1 212827 213625 + 394 M 32 96 G 1 0 M 132 396 G 0 6 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212828 213625 394 + . gene_id 11 ; sequence CbirOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212828 213625 . + . KQ414889.1 exonerate:protein2genome:local exon 212828 213625 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212828 213625 394 + . alignment_id 11 ; Query CbirOr29 ; Align 212828 9 96 ; Align 212924 42 396 ; Align 213326 174 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 370 Query range: 19 -> 273 Target range: 232447 -> 233212 20 : ArgAspIleArgTyrAlaThrGlnLeuSerArgTrpIleLeuLysProIleGlyIleT : 39 |||||| !..!|||::!! !|||:!!!:!||||||.!!|||! !|||!!:||| !| ArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaT 232448 : CGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCAT : 232505 40 : rpHisLeuIleTyrAlaArgSerSerArgValGluLysLeuPheSerValThrMetIl : 58 ||! ! !:!! .!!..!!!!||||||!.!:!!:!!|||.!!:!! ! !:!!! rpProArgVal---ThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuAr 232506 : GGCCGCGTGTT---ACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAG : 232559 59 : ePheValCysPheAlaValLeuPhePheValLeuValProSerSerProTyrValLeu : 77 !.!!..!||| !:!!:!!:!!.!!! ! !:!!||||||!!!! !! !!:!:!!||| gLeuThrCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeu 232560 : ACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTG : 232616 78 : PheSerLysAsnAsnIleSerThrLysAlaLysLeuLeuGlyProValLeuPheCysL : 97 |||..! ! !..!:!:!!..! !!:! !|||! !:!!||||||:!! ! !! !| PheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheL 232617 : TTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTC : 232676 98 : euThrSerAlaValLysTyrTyrPheLeuGlyThrArgGlyGluMetIleGlyArgCy : 116 ||! !.!!! !:!!!!.|||! !! !||| !.!!!:!!.!.!. ||| ! !|| euMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCy 232677 : TGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTG : 232733 117 : sValAsnGlnMetGluAspAspTrpArgIleValArgTyrGlnAspHisArgLysMet : 135 ||||.!.|||:!!:!!.!.|||||||||! !|||!:! ! ! ! !|||||| ! :!! sValGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeu 232734 : CGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTG : 232790 136 : MetLeuAspAsnAlaLeuValGlyArgArgLeuThrThrLeuSerValIlePheLeuT : 155 |||||| ! |||||| !:!!|||||| !:!!.!! !:!!:!!!.!.!!! !:!!: MetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetH 232791 : ATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGC : 232850 156 : yrThrGlyGlyLeuSerTyrHisIleIle<-><->LeuProPheSerThrLysLysGl : 172 !!||||||! ! !||| !!.!.|||:!! |||! !.!.|||||| ! ! isThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrVa 232851 : ACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGT : 232907 173 : yLeuAsnAsnThrPheThrAsnLysProLeuIleTyrGlnGlyTyrAspValTyrPhe : 191 ! !|||.!.!:!!:!:!!! ! |||||| !! ! ! !||| ! .!. lGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMet 232908 : GGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATG : 232964 192 : AspSerGlnAlaSerProAlaTyrAspIleValPheSerValHisCysValSerAlaV : 211 |||!!!::! !||||||.!! !!!!:|||:!!||| !:!!!!.|||:!!|||!.! AspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyP 232965 : GACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGT : 233024 212 : alIleGlnTyrAsnIleThrThrAlaAlaCysSerLeuAlaAlaIlePheValMetHi : 230 !!||| ! !!::!:!!|||..!!.!||||||.!!|||!.!|||:!!.!.!.!||||| heIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHi 233025 : TCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCA : 233081 231 : sValCysGlyGlnValGlnIleLeuMetThrMetLeuGlyAspLeuValGluGlyGlu : 249 |!.!|||||||||:!!.!.:!::!!|||:!!! |||! !|||||||||!!:!.!:!! sAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLys 233082 : CGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAA : 233138 250 : ArgAspLysGlyThrSerValGluGluArgLeuGlyValIleAlaArgTyrHisValA : 269 !!.!.:!!! !! ! !!.!:!!..!!:!|||||| !!|||!.!..!:!!|||:!!| GlyGlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuA 233139 : GGGCAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGC : 233198 270 : rgValLeuArgPhe : 273 ||..!||||||!:! rgThrLeuArgTyr 233199 : GTACATTAAGGTAT : 233212 vulgar: CbirOr29 19 273 . KQ414889.1 232447 233212 + 370 M 23 69 G 1 0 M 121 363 G 0 6 M 109 327 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232448 233212 370 + . gene_id 12 ; sequence CbirOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232448 233212 . + . KQ414889.1 exonerate:protein2genome:local exon 232448 233212 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 232448 233212 370 + . alignment_id 12 ; Query CbirOr29 ; Align 232448 20 69 ; Align 232517 44 363 ; Align 232886 165 327 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 363 Query range: 14 -> 272 Target range: 208185 -> 208962 15 : AsnValHisHisGlnArgAspIleArgTyrAlaThrGlnLeuSerArgTrpIleLeuL : 34 ||| !:!!:!!:!!!.!|||:!:!!!!:! !..!!::|||!:! !|||! |||| AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 35 : ysProIleGlyIleTrpHisLeuIleTyrAlaArgSerSerArgValGluLysLeuPh : 53 || !|||||| !|||! ! ! ! !||| ||| !!:!!|||!!. ! ysIleIleGlySerTrpProArgSerIleAspArg---SerTrpLeuGluAsnSerGl 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGT---TCCTGGTTAGAGAACAGCCA : 208297 54 : eSerValThrMetIlePheValCysPheAlaValLeuPhePheValLeuValProSer : 72 !:!! !:!:! ! ! :!! !! !..!:!!||| !|||:!!:!!:!!|||!!! nHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThr 208298 : GCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACC : 208354 73 : SerProTyrValLeuPheSerLysAsnAsnIleSerThrLysAlaLysLeuLeuGlyP : 92 .!! !!:!!.!:!!.!! ! .!.:!!.!!! ! !:!! !|||:!!! !.!! GlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerA 208355 : GGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCG : 208414 93 : roValLeuPheCysLeuThrSerAlaValLysTyrTyrPheLeuGlyThrArgGlyGl : 111 !!:!! !|||! !:!!! !:!! !..!|||||| .!!:!! !..!|||! !! laLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGl 208415 : CTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGG : 208471 112 : uMetIleGlyArgCysValAsnGlnMetGluAspAspTrpArgIleValArgTyrGln : 130 ||| !!!:!||||||.!. ! :!:|||! !|||||||||! !|||..!:!!:!! yAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGlu 208472 : TGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAG : 208528 131 : AspHisArgLysMetMetLeuAspAsnAlaLeuValGlyArgArgLeuThrThrLeuS : 150 !!: !!||||||!!:||||||||||||||| ! !!!.!|||!:!|||! !..!:!!! GluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleC 208529 : GAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATAT : 208588 151 : erValIlePheLeuTyrThrGlyGlyLeuSerTyrHisIleIleLeuProPheSerTh : 169 !!! ! !|||:!!||| !||| ::: |||:::||| !||||||.!!!!! ysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrAr 208589 : GCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCG : 208645 170 : rLysLysGlyLeu<-><->AsnAsnThrPheThrAsnLysProLeuIleTyrGlnGly : 186 ! ! |||! !:!! ..!..!!.!!!.||| !!!:! !|||:!!|||! ! ! gAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProVal 208646 : AGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTT : 208702 187 : TyrAspValTyrPheAspSerGlnAlaSerProAlaTyrAspIleValPheSerValH : 206 ! ! !! !.!.||| !!:! !||||||!.! !!!!:||| !!!:!!!!|||! ProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValG 208703 : CCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTAC : 208762 207 : isCysValSerAlaValIleGlnTyrAsnIleThrThrAlaAlaCysSerLeuAlaAl : 225 !.! :!!|||!.! !!:!! :!!|||||||||..!!.!||||||.!!|||||||| lnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAl 208763 : AATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGC : 208819 226 : aIlePheValMetHisValCysGlyGlnValGlnIleLeuMetThrMetLeuGlyAsp : 244 |:!:.!!!.!||||||!.!|||||||||:!!||||||||||||:!! !:!!! ! ! aLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLys 208820 : GCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAG : 208876 245 : LeuValGluGlyGluArgAspLysGlyThrSerValGluGluArgLeuGlyValIleA : 264 ||||||!!:|||..!..!|||:!!! !! !!:!:!!!!::!!||||||!.! !|||! LeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleV 208877 : TTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCG : 208936 265 : laArgTyrHisValArgValLeuArg : 272 .!..! ! ||||||||||||:!!!:! alGluGlnHisValArgValIleLys 208937 : TGGAGCAGCATGTTCGAGTGATCAAG : 208962 vulgar: CbirOr29 14 272 . KQ414889.1 208185 208962 + 363 M 31 93 G 1 0 M 127 381 G 0 6 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 208962 363 + . gene_id 13 ; sequence CbirOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208186 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208962 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208186 208962 363 + . alignment_id 13 ; Query CbirOr29 ; Align 208186 15 93 ; Align 208279 47 381 ; Align 208666 174 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 339 Query range: 6 -> 272 Target range: 266586 -> 267390 7 : LeuAlaAsnLysIleGlnValTyrAsnValHisHisGlnArgAspIleArgTyrAlaT : 26 :!!||||||:!! !||| !.!.!.!:!!! .!.!!! ! ! !|||::! MetAlaAsnGluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerL 266587 : ATGGCTAACGAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCC : 266644 27 : hrGlnLeuSerArgTrpIleLeuLysProIleGlyIleTrpHisLeuIleTyrAlaAr : 45 !||||||!:!||||||.!!||||||||||||||| !|||! ! !:!: :!!! euGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeu---SerLe 266645 : TGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTG---TCACT : 266698 46 : gSerSerArgValGluLysLeuPheSerValThrMetIlePheValCysPheAlaVal : 64 !!!!|||!:!:!!|||::!:!! !!||| !.!!:!!||| !!:!!|||!:!..! ! uThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSer 266699 : CACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCC : 266755 65 : LeuPhePheValLeuValProSerSerProTyrValLeuPheSerLysAsnAsnIleS : 84 :!!.!.|||..!:!!:!!|||!!!! ! !:!!:!!:!!.!...! ! .!.!:!||| IleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleA 266756 : ATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCC : 266815 85 : erThrLysAlaLysLeuLeuGlyProValLeuPheCysLeuThrSerAlaValLysTy : 103 !!||||||!.!|||:!!!!!||||||:!! ! !!! !!!..!.!!!.!:!!!!.|| rgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTy 266816 : GTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTA : 266872 104 : rTyrPheLeuGlyThrArgGlyGluMetIleGlyArgCysValAsnGlnMetGluAsp : 122 | ! ||| ! !|||.!!:!! !||| !! !!||||||.!.!!.|||:!! rThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThr 266873 : CACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACA : 266929 123 : AspTrpArgIleValArgTyrGlnAspHisArgLysMetMetLeuAspAsnAlaLeuV : 142 |||||||||||||||! ! ! !!!: !!!:!:!!:!!|||||| ! |||||| !: AspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgI 266930 : GATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGA : 266989 143 : alGlyArgArgLeuThrThrLeuSerValIlePheLeuTyrThrGlyGlyLeuSerTy : 161 !!|||||| !:!!.!!! !!!!!!!!.! |||:!! ! !|||! !|||.!!|| leGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTy 266990 : TCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTA : 267046 162 : rHisIleIleLeuProPheSer<-><->ThrLysLysGlyLeuAsnAsnThrPheThr : 178 | !:!:||| ! !!|||!!! ||| !:!!! ! !|||.!.||| ! ! rCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIle 267047 : CTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATC : 267103 179 : AsnLysProLeuIleTyrGlnGlyTyrAspValTyrPheAspSerGlnAlaSerProA : 198 ! ! !||| !! ! !! !||| ! ! .!!! !.!..!!||||||. ValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProT 267104 : GTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGA : 267163 199 : laTyrAspIleValPheSerValHisCysValSerAlaValIleGlnTyrAsnIleTh : 217 !! !!!!:||||||.!! ! !!!.! !||||||!.! !!||| ! !!:::! !.. hrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerVa 267164 : CGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGT : 267220 218 : rThrAlaAlaCysSerLeuAlaAlaIlePheValMetHisValCysGlyGlnValGln : 236 !..!!.!|||! !||||||||||||:!:|||!.! |||!.!|||||||||:!!... lValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSer 267221 : CGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGC : 267277 237 : IleLeuMetThrMetLeuGlyAspLeuValGluGlyGluArgAspLysGlyThrSerV : 256 :!:||||||! ! !:!! !!!:!!!|||.!. !!...||||||!....!! !!:!| ValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnV 267278 : GTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACG : 267337 257 : al<->GluGluArgLeuGlyValIleAlaArgTyrHisValArgValLeuArg : 272 || !!:!:!:!!||||||:!!!.!..!:!!|||:!!|||||||||||| alCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeuArg 267338 : TTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGAGG : 267390 vulgar: CbirOr29 6 272 . KQ414889.1 266586 267390 + 339 M 36 108 G 1 0 M 125 375 G 0 6 M 88 264 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266587 267390 339 + . gene_id 14 ; sequence CbirOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266587 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266587 267390 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 266587 267390 339 + . alignment_id 14 ; Query CbirOr29 ; Align 266587 7 108 ; Align 266695 44 375 ; Align 267076 169 264 ; Align 267343 257 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 337 Query range: 17 -> 202 Target range: 294669 -> 295227 18 : HisGlnArgAspIleArgTyrAlaThrGlnLeuSerArgTrpIleLeuLysProIleG : 37 :!!::!!.!|||:!: ! !!::! !:!!! !!!!||| !!:!:||||||||||||| AsnArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleG 294670 : AACAGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCG : 294727 38 : lyIleTrpHisLeuIleTyrAlaArgSerSerArgValGluLysLeuPheSerValTh : 56 ||:!!|||! |||||||||::!!.!!!!|||!:!:!!.!.|||:!!.!!|||:!!! lyLeuTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIl 294728 : GTCTTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAAT : 294784 57 : rMetIlePheValCysPheAlaValLeuPhePheValLeuValProSerSerProTyr : 75 !:!!||| !||| !..!:!!.!.|||||||||||||||!!!.!! !!:! eLeuIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPhe 294785 : TCTGATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTC : 294841 76 : ValLeuPheSerLysAsnAsnIleSerThrLysAlaLysLeuLeuGlyProValLeuP : 95 !:!!||| ! ...|||:::... ||| !|||||||||||||||||||||! CysValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuT 294842 : TGTGTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTAT : 294901 96 : heCysLeuThrSerAlaValLysTyrTyrPheLeuGlyThrArgGlyGluMetIleGl : 114 :!! !:!! !||| !:!!!:!||| !! !|||! ! !!:! ! !.!! yrSerMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLy 294902 : ACTCTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAA : 294958 115 : yArgCysValAsnGlnMetGluAspAspTrpArgIleValArgTyrGlnAspHisArg : 133 !!.!|||:!!.!..!.!!:|||:!!||||||!:!:!::!! ! !!! !!!:|||||| sHisCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArg 294959 : GCATTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGA : 295015 134 : LysMetMetLeuAspAsnAlaLeuValGlyArgArgLeuThrThrLeuSerValIleP : 153 !!!:|||:!! ! ||||||:!!||| !!:!|||:!!|||..! !! !..!|||. AlaIleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleI 295016 : GCGATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTA : 295075 154 : heLeuTyrThrGlyGlyLeuSerTyrHisIleIleLeuProPheSerThrLysLysGl : 172 !.:!!|||!:!..!!.!:!!||||||||| !|||:::|||||| :::... leIleTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLe 295076 : TAATCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTT : 295132 173 : yLeuAsn<->AsnThrPheThrAsnLysProLeuIleTyrGlnGlyTyrAspValTyr : 190 ! !||| !!.!.! !|||! !::: !!||| ! !! ||||||!!::!!!:! uGluAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPhe 295133 : GGAGAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTC : 295189 191 : PheAspSerGlnAlaSerProAlaTyrAspIleVal : 202 ! |||:!! ! :!!||||||.!!|||!!:|||:!! ValAspAlaTyrSerSerProThrTyrGluIleIle 295190 : GTAGACGCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: CbirOr29 17 202 . KQ414889.1 294669 295227 + 337 M 157 471 G 0 3 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294670 295227 337 + . gene_id 15 ; sequence CbirOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294670 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294670 295227 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294670 295227 337 + . alignment_id 15 ; Query CbirOr29 ; Align 294670 18 471 ; Align 295144 175 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 332 Query range: 23 -> 272 Target range: 274383 -> 275136 24 : TyrAlaThrGlnLeuSerArgTrpIleLeuLysProIleGlyIleTrpHisLeuIleT : 43 |||::! !||||||!:!||||||.!!||||||||||||||| |||! ||| ! TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAla- 274384 : TACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCC- : 274441 44 : yrAlaArgSerSerArgValGluLysLeuPheSerValThrMetIlePheValCysPh : 62 :!!! !!!!!!!!:! !!|||::!:!!.!!||| ! :::||||||:::|||:: --SerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTy 274442 : --TCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctA : 274495 63 : eAlaValLeuPhePheValLeuValProSerSerProTyrValLeuPheSerLysAsn : 81 !..! !!:!!.!!! !..!:!!:!!||||||! ! !:!!:!!:!!.!. ! ! .!. rCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGlu 274496 : CTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAA : 274552 82 : AsnIleSerThrLysAlaLysLeuLeuGlyProValLeuPheCysLeuThrSerAlaV : 101 !:!:!! ! !||| !|||||||||||||||:!! ! !!! !!!! !.!!!.!: SerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyI 274553 : AGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAA : 274612 102 : alLysTyrTyrPheLeuGlyThrArgGlyGluMetIleGlyArgCysValAsnGlnMe : 120 !!!!.||| ! ||| ! !|||.!!:!! !||| !! !!||||||.!.!!.|| leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 274613 : TTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACAT : 274669 121 : tGluAspAspTrpArgIleValArgTyrGlnAspHisArgLysMetMetLeuAspAsn : 139 |:!! |||||||||||||||! ! ! !!!: !!!:!:!!:!!|||||| ! ||| tGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsn 274670 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAAC : 274726 140 : AlaLeuValGlyArgArgLeuThrThrLeuSerValIlePheLeuTyrThrGlyGlyL : 159 ||| !:!!|||||| !:!!.!!! !!!!!!!!.! |||:!! ! !|||! !| AlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 274727 : GCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTC : 274786 160 : euSerTyrHisIleIleLeuProPheSer<-><->ThrLysLysGlyLeuAsnAsnTh : 176 ||!!!||| !:!:||| ! !!|||!!! ||| :!!! ! !|||.!.|| euCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluTh 274787 : TCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGAC : 274843 177 : rPheThrAsnLysProLeuIleTyrGlnGlyTyrAspValTyrPheAspSerGlnAla : 195 | ||| ! !||| ! !:!!!.!||| ! ! ! !!! !.!..!! rArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThr 274844 : CAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACG : 274900 196 : SerProAlaTyrAspIleValPheSerValHisCysValSerAlaValIleGlnTyrA : 215 ||||||.!! !!!!:||||||.!!:!! !!!.! !||||||!.! !!||| ! !!: SerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnS 274901 : AGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATT : 274960 216 : snIleThrThrAlaAlaCysSerLeuAlaAlaIlePheValMetHisValCysGlyGl : 234 ::! !.!!..!!.!|||! !||||||||||||:!:|||!.! |||!.!! !||||| erSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGl 274961 : CGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCA : 275017 235 : nValGlnIleLeuMetThrMetLeuGlyAspLeuValGluGlyGluArgAspLysGly : 253 |:!!...:!:||||||! ! !:!! !!!:!!!|||.!. !...||||||:::... nLeuSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsn 275018 : GTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaat : 275074 254 : ThrSerValGlu<->GluArgLeuGlyValIleAlaArgTyrHisValArgValLeuA : 272 :::||| .....!:!!||||||:!!!.!..!:!!|||:!!|||||||||| LysAsnValTyrPheSerGluIleGlyValValValGluHisHisLeuArgValLeuA 275075 : aaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTCA : 275134 273 : rg : 272 || rg 275135 : GG : 275136 vulgar: CbirOr29 23 272 . KQ414889.1 274383 275136 + 332 M 19 57 G 1 0 M 125 375 G 0 6 M 89 267 G 0 3 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274384 275136 332 + . gene_id 16 ; sequence CbirOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274384 275136 . + . KQ414889.1 exonerate:protein2genome:local exon 274384 275136 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 274384 275136 332 + . alignment_id 16 ; Query CbirOr29 ; Align 274384 24 57 ; Align 274441 44 375 ; Align 274822 169 267 ; Align 275092 258 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 300 Query range: 0 -> 123 Target range: 299620 -> 299989 1 : MetTyrAspGlnCysGlnLeuAlaAsnLysIleGlnValTyrAsnValHisHisGlnA : 20 |||||||||!:!! ! !::! ! ! !|||:!! ||| !|||:!!|||! MetTyrAspArgSerCysSerSerValAspGlyGlnLeuArgAsnTyrHisTyrGlnA 299621 : ATGTACGATCGATCCTGTAGCAGTGTTGACGGCCAATTGAGGAATTACCATTACCAAA : 299678 21 : rgAspIleArgTyrAlaThrGlnLeuSerArgTrpIleLeuLysProIleGlyIleTr : 39 .!||||||!.!|||.!! !|||:!!!!!!:!|||:!:|||||||||||||||:!!|| snAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTr 299679 : ATGACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATG : 299735 40 : pHisLeuIleTyrAlaArgSerSerArgValGluLysLeuPheSerValThrMetIle : 58 |!..|||:!! !! !|||||||||!:!:!!||| ! ||| !!|||:!!..!:!:!!: pArgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMet 299736 : GCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCATG : 299792 59 : PheValCysPheAlaValLeuPhePheValLeuValProSerSerProTyrValLeuP : 78 :!!||||||:!! !|||||||||:!!:!!:!!||||||.!!! !|||:!!!!!| ThrIleCysPheSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePheP 299793 : ACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCT : 299852 79 : heSerLysAsnAsnIleSerThrLysAlaLysLeuLeuGlyProValLeuPheCysLe : 97 ||:!!:!!!!.!:!||| !..!|||!.!|||:!!!!!||||||||| !|||||||| heAlaGluLysSerIleHisValLysValLysValPheGlyProValGlyPheCysLe 299853 : TCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCT : 299909 98 : uThrSerAlaValLysTyrTyrPheLeuGlyThrArgGlyGluMetIleGlyArgCys : 116 |:!!||| !|||||||||! !!:!||| !! !!.!|||! !.!!! !|||||| uSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCys 299910 : CTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGC : 299966 117 : ValAsnGlnMetGluAspAsp : 123 :!!.!.!!.:!:||| ||| IleGlnHisValGluArgAsp 299967 : ATCCAACACGTCGAGAGAGAC : 299989 vulgar: CbirOr29 0 123 . KQ414889.1 299620 299989 + 300 M 123 369 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299621 299989 300 + . gene_id 17 ; sequence CbirOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299621 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299621 299989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299621 299989 300 + . alignment_id 17 ; Query CbirOr29 ; Align 299621 1 369 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 296 Query range: 18 -> 272 Target range: 204221 -> 204980 19 : GlnArgAspIleArgTyrAlaThrGlnLeuSerArgTrpIleLeuLysProIleGlyI : 38 :!!..!|||:!:||||||||||||!::!!! !!:! !|||||| ! !:!!||| GluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyA 204222 : GAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTG : 204279 39 : leTrpHisLeuIleTyrAlaArgSerSerArgValGluLysLeuPheSerValThrMe : 57 |||! ||| !.!!.!||||||! ! !! !!:!||| ! !! !! ! laTrpPro---IleProValAsnSerSerProPheThrArgLeuValArgArgIleGl 204280 : CGTGGCCG---ATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGA : 204333 58 : tIlePheValCysPheAlaValLeuPhePheValLeuValProSerSerProTyrVal : 76 ! ! ||| !::: :::...|||...:!!:!!||||||.!! ! !|||||| uHisValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrVal 204334 : ACACGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTG : 204390 77 : LeuPheSerLysAsnAsnIleSerThrLysAlaLysLeuLeuGlyProValLeuPheC : 96 !!!.!.!.!:!!!!.||| !!.!! !::: !|||:!!|||||||||:!!:!! !| PheLeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnC 204391 : TTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACT : 204450 97 : ysLeuThrSerAlaValLysTyrTyrPheLeuGlyThrArgGlyGluMetIleGlyAr : 115 || !! !..! ! !!||||||! ! !!:!! ! !||| !!!:! ||| !!: ysSerIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLy 204451 : GCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAA : 204507 116 : gCysValAsnGlnMetGluAspAspTrpArgIleValArgTyrGlnAspHisArgLys : 134 ! !!:!!||| !!:..! !|||||| |||! ! ! .!.!!::!!||| ! sSerLeuAsnThrIleArgArgAspTrp---IleGluAlaThrAspGluAsnArgLeu 204508 : GAGTTTGAACACCATCAGACGCGACTGG---ATAGAGGCTACGGATGAAAATCGGTTG : 204561 135 : MetMetLeuAspAsnAlaLeuValGlyArgArgLeuThrThrLeuSerValIlePheL : 154 !!:.!.! !...!!.||| !:!!|||||||||:!! ! !:!!:!!!.! ! !: IlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrM 204562 : ATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTA : 204621 155 : euTyrThrGlyGlyLeuSerTyrHisIleIleLeuProPheSerThrLysLysGlyLe : 173 !!||| !|||||||||!!!|||...! |||||||||!!.! !! ! !! ! !:! etTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleVa 204622 : TGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGT : 204678 174 : uAsn<->AsnThrPheThrAsnLysProLeuIleTyrGlnGlyTyrAspValTyrPhe : 191 !!.. :!!!.! !!|||! !:!|||||| ! !! !! !||| |||:::||| lThrProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePhe 204679 : AACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttcttt : 204735 192 : AspSerGlnAlaSerProAlaTyrAspIleValPheSerValHisCysValSerAlaV : 211 :::..!||| !|||||| !|||!!:|||||||||! !:!!!!. !:!!:!!!.! AsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyP 204736 : aacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTT : 204795 212 : alIleGlnTyrAsnIleThrThrAlaAlaCysSerLeuAlaAlaIlePheValMetHi : 230 !!:!! ||| !:!!! !!:!!.!.!!|||.!!:!!..!|||:!:||||||:!:|| heValThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHi 204796 : TTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCA : 204852 231 : sValCysGlyGlnValGlnIleLeuMetThrMetLeuGlyAspLeuValGluGlyGlu : 249 |!.!|||.!!..!:!!::!||||||:!!!.!! !:!!..!! ||||||!!: !! ! sAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAla 204853 : CGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCG : 204909 250 : ArgAspLysGlyThrSerValGluGluArgLeuGlyValIleAlaArgTyrHisValA : 269 ! ! ! !||| !|||.!...!!:!:!!!.!! !|||!.!..!|||!!...!! AspMetThrGluThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrL 204910 : GACATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGA : 204969 270 : rgValLeuArg : 272 :!:!! !||| ysIleLysArg 204970 : AGATAAAGAGG : 204980 vulgar: CbirOr29 18 272 . KQ414889.1 204221 204980 + 296 M 22 66 G 1 0 M 83 249 G 1 0 M 49 147 G 0 3 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204222 204980 296 + . gene_id 18 ; sequence CbirOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204222 204980 . + . KQ414889.1 exonerate:protein2genome:local exon 204222 204980 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 204222 204980 296 + . alignment_id 18 ; Query CbirOr29 ; Align 204222 19 66 ; Align 204288 42 249 ; Align 204537 126 147 ; Align 204687 175 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 294 Query range: 23 -> 272 Target range: 262849 -> 263602 24 : TyrAlaThrGlnLeuSerArgTrpIleLeuLysProIleGlyIleTrpHisLeuIleT : 43 |||::! !|||:!!!:!||||||:!:||||||||||||||| !|||! ||| ! TyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeu---S 262850 : TACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTG---T : 262904 44 : yrAlaArgSerSerArgValGluLysLeuPheSerValThrMetIlePheValCysPh : 62 !||| !! !||||||:!!|||::!:!!.!!!!! !! !:!:||| !!||||||!: erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 63 : eAlaValLeuPhePheValLeuValProSerSerProTyrValLeuPheSerLysAsn : 81 !..!:!!:!!.!.! !..!:!!:!!||||||! !! !:!!:!!:!!.!...! .!. rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 82 : AsnIleSerThrLysAlaLysLeuLeuGlyProValLeuPheCysLeuThrSerAlaV : 101 |||.!! !! !||| !:!!:!!|||||||||:!! ! !! !!!..!.!! !: AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 102 : alLysTyrTyrPheLeuGlyThrArgGlyGluMetIleGlyArgCysValAsnGlnMe : 120 !!!!.||| !!::||| ! !!.!.!!:!! ||| ! !!||||||.!.!!.:! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 121 : tGluAspAspTrpArgIleValArgTyrGlnAspHisArgLysMetMetLeuAspAsn : 139 !:!!!!:|||||| !!||||||! ! !!!: !!!:!:::!!:|||||| ! ||| lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 140 : AlaLeuValGlyArgArgLeuThrThrLeuSerValIlePheLeuTyrThrGlyGlyL : 159 ||| ! !|||||| !:!!.!!.!!! !!!!!.!||||||:!! ! |||.!! !: AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 160 : euSerTyrHisIleIleLeuProPheSerThrLys<-><->LysGlyLeuAsnAsnTh : 176 !!!!! ! !:!!:!! ! !!|||!!!|||:!! :!!! ! !|||.!.|| etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 177 : rPheThrAsnLysProLeuIleTyrGlnGlyTyrAspValTyrPheAspSerGlnAla : 195 | ! ! ::: !||| ! !! !! !||| ! ! ! !.!! !.!..!! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 196 : SerProAlaTyrAspIleValPheSerValHisCysValSerAlaValIleGlnTyrA : 215 !:!|||.!! !!!!:||| !!.!!:!!..!!!.! !:!!|||!.! !!||| ! AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 216 : snIleThrThrAlaAlaCysSerLeuAlaAlaIlePheValMetHisValCysGlyGl : 234 ! !|||..!!.!|||! !.!!:!!.!!|||:!:|||!.! |||!.!|||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 235 : nValGlnIleLeuMetThrMetLeuGlyAspLeuValGluGlyGluArgAspLysGly : 253 |:!!.!.:!:||||||:!! !:!! !!!:!!!|||.!. !...||||||:!!..! nLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsn 263484 : GTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAAT : 263540 254 : ThrSerValGlu<->GluArgLeuGlyValIleAlaArgTyrHisValArgValLeuA : 272 ! !!:!:!! ! ..!:!!|||||||||!.!..!:!!|||:!!|||||||||| LysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeuA 263541 : AAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTGA : 263600 273 : rg : 272 || rg 263601 : GG : 263602 vulgar: CbirOr29 23 272 . KQ414889.1 262849 263602 + 294 M 18 54 G 1 0 M 128 384 G 0 6 M 87 261 G 0 3 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262850 263602 294 + . gene_id 19 ; sequence CbirOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262850 263602 . + . KQ414889.1 exonerate:protein2genome:local exon 262850 263602 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 262850 263602 294 + . alignment_id 19 ; Query CbirOr29 ; Align 262850 24 54 ; Align 262904 43 384 ; Align 263294 171 261 ; Align 263558 258 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 293 Query range: 5 -> 304 Target range: 194117 -> 196390 6 : GlnLeuAlaAsnLysIleGlnValTyrAsnValHisHisGlnArgAspIleArgTyrA : 25 ::::::|||...||| .!. ! !||||||:!!:!!:!! !|||! !..!|||| GluIleAlaLysLysSerAsnTyrArgAsnValAsnTyrLysLeuAspThrGluTyrA 194118 : gaaatcgcgaagaaatcgAATTACCGCAACGTCAATTACAAATTGGACACCGAGTACG : 194175 26 : laThrGlnLeuSerArgTrpIleLeuLysProIleGlyIleTrpHisLeuIleTyrAl : 44 ||..!!:!:!!:!!!:! !:!!|||! !|||||||||||||||! ! !!:! laValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProArgGluAspSe 194176 : CTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAAGGGAGGATTC : 194232 45 : aArgSerSerArgValGluLysLeuPheSerValThrMetIlePheValCysPheAla : 63 !! ! !!..!|||||| ::!||||||:!! !||| !||| !|||||| rLeuArgAspArgVal---ArgLeuPheAlaGlnThr------GlyValValPheAla 194233 : TCTTCGCGACAGAGTC---CGACTGTTCGCTCAAACT------GGCGTGGTCTTCGCT : 194280 64 : ValLeuPhePheValLeuValProSerSerProTyrValLeuPheSerLysAsnAsnI : 83 :!!:!!! !|||:!!||||||||| ! ! !|||..!! !|||..! .!.:!!: LeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCysGluAspL 194281 : TTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAGGATC : 194340 84 : leSerThrLysAlaLysLeuLeuGlyProValLeuPheCysLeuThrSerAlaValLy : 102 !:!!!! ! ! !|||:!!:!!!.! !! !:!!||| !!||| !:!! !:!!|| euThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleIleLy 194341 : TGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCATCAA : 194397 103 : sTyrTyrPheLeuGlyThrArgGlyGluMetIleGlyArgCysValAsnGlnMetGlu : 121 |!:!!:: :!! !..!!.! !!:!! !||| !! !|||:!! :!!|||||| sPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGluMetGlu 194398 : GTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGATGGAG : 194454 122 : AspAspTrpArgIleValArgTyrGlnAspHisArgLysMetMetLeuAspAsnAlaL : 141 .!.!::||| !|||..!! !:!!!!: !!|||:!!:!!||| !:!! !||| ThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsnCysAlaL 194455 : ACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGCGCGA : 194514 142 : euValGlyArgArgLeuThrThrLeuSerValIlePheLeuTyrThrGlyGlyLeuSe : 160 !:!!|||||| !!!!|||||||||! !:!! !.!!! !||| !|||!.!||| ! ysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaLeuPr 194515 : AAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTTTGCC : 194571 161 : rTyrHisIleIleLeuProPheSerThrLysLysGlyLeu<->AsnAsnThrPheThr : 178 !||||||||||||||||||.!.! !:!!:!!!:! !:!! .!.:!!!.! !||| oTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGluAspAsnSerThr 194572 : GTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAACAGTACT : 194628 179 : AsnLysProLeuIleTyrGlnGlyTyrAspValTyrPheAspSerGlnAlaSerProA : 198 .!.! !|||||| !||| !.!! !! !!|||!:!|||! ! !:!!! !|||||| GlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAspSerProI 194629 : CAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGACTCGCCGA : 194688 199 : laTyrAspIleValPheSerValHisCysValSerAlaValIleGlnTyrAsnIleTh : 217 !|||!!:|||..!||| ! !!!. :!!! !::! !||| !! :::! !. leTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuSerThrAs 194689 : TTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGTCGACGAA : 194745 218 : rThrAlaAlaCysSerLeuAlaAlaIlePheValMetHisValCysGlyGlnValGln : 236 ! !!.! !! !||||||!.!|||! !.!!:!!|||||| !|||||| ! !!:!! nCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGlyLeuPheGlu 194746 : TTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTTGTTCGAA : 194802 237 : IleLeuMetThrMetLeuGlyAspLeuValGluGlyGluArgAspLysGlyThrSerV : 256 :!: !! ! !! !:!!! ! !:!! ... ! !! |||! !..!: ValThrSerArgArgMetGluThrIle---------SerValProThrGlyLysAspI 194803 : GTGACCAGCAGAAGGATGGAGACTATT---------TCTGTGCCCACTGGGAAGGATA : 194853 257 : alGluGluArgLeuGlyValIleAlaArgTyrHisValArgValLeu{Ar} >>>> : 272 !!..!! |||||| !!! !:!!!.!!:!!:!|||:!!!:!!.!:!!{!:} leArgGlyArgLeuArgAspValValGlnPheHisLeuLysAlaIle{Ly}++ 194854 : TTCGGGGTAGACTTAGGGACGTCGTTCAGTTTCATCTGAAAGCAATT{AA}gt..... : 194905 273 : Target Intron 1 >>>> {g}PheAlaValAspValGluGluValLeuArgGlu : 283 1391 bp {!}||||||! ! :!!|||:!!!.!|||!.! ++{s}PheAlaGluMetIleGluLysAlaLeuAsnIle 194906 : ....................ag{a}tTCGCTGAAATGATCGAGAAAGCACTGAACATC : 196325 284 : MetCysLeuMetGluLeuValAlaAlaThrPheIleIleCysLeuLeuGluTyrTyrI : 303 :!!! !||| |||:!!:!!!.!..!|||.!!|||||||||!!!||||||||| !: ValPheLeuSerGluMetLeuGlyCysThrIleIleIleCysPheLeuGluTyrGlyV 196326 : GTGTTTCTATCAGAGATGCTTGGCTGCACTATCATCATATGTTTCCTGGAATACGGTG : 196385 304 : leMet : 304 !!!!: alIle 196386 : TAATC : 196390 vulgar: CbirOr29 5 304 . KQ414889.1 194117 196390 + 293 M 44 132 G 1 0 M 6 18 G 2 0 M 115 345 G 0 3 M 72 216 G 3 0 M 23 69 S 0 2 5 0 2 I 0 1387 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194118 196390 293 + . gene_id 20 ; sequence CbirOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 194118 194902 . + . KQ414889.1 exonerate:protein2genome:local exon 194118 194902 . + . insertions 3 ; deletions 6 KQ414889.1 exonerate:protein2genome:local splice5 194903 194904 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 194903 196293 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 196292 196293 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 196294 196390 . + . KQ414889.1 exonerate:protein2genome:local exon 196294 196390 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194118 196390 293 + . alignment_id 20 ; Query CbirOr29 ; Align 194118 6 132 ; Align 194250 51 18 ; Align 194268 59 345 ; Align 194616 174 216 ; Align 194832 249 69 ; Align 196295 273 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 248 Query range: 297 -> 408 Target range: 214605 -> 215130 298 : LeuLeuGluTyrTyrIleMetThrGluTrpGluAsnSerAspValLeuGlyIleAlaT : 317 :::::::::::: |||::: ||||||.!.:::!:!:!!:!! ! !! !!.!| IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 318 : hrTyrPheIleLeuPheIleSerLeuSerPheAsnPheLeuIlePheCysTyrIleGl : 336 ||||| ! :!:|||!:!|||||||||:::||||||......||||||||||||||||| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 337 : yGluLeuLeuValGluGlu >>>> Target Intron 1 >>>> TyrSerLysI : 346 |||||||:!! !|||:!! 123 bp ! !!.!|||: yGluLeuValSerGluGln++ ++CysLysLysV 214721 : CGAGCTTGTGTCTGAACAGgt.........................agTGCAAAAAGG : 214873 347 : leAlaSerAlaValTyrGlyIleAsnTrpTyrAspLeuProGlyHisLysAlaLeuHi : 365 !!!.!..!!.! !||| !|||.!.|||||| |||||||||:!!||| !||| alGlyGluValSerTyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCy 214874 : TCGGAGAAGTATCGTACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTG : 214930 366 : sLeuValMetIleIleThrMetSerGlnTyrProProLysLeuThrAlaGlyLysPhe : 384 !! !:!!:!!|||!!:.!!||||||.!.! !! !|||!!!|||||||||!!..!. sCysIleLeuIleMetAlaMetSerAsnSerSerValLysPheThrAlaGlyAsnMet 214931 : TTGCATTTTGATCATGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATG : 214987 385 : ValAspPheSerLeuSerThrPheSerThr >>>> Target Intron 2 >>>> : 395 |||!!:.!.|||:!!||||||||||||!:! 69 bp ValGluLeuSerIleSerThrPheSerSer++ + 214988 : GTAGAACTGTCTATCAGCACTTTCAGCAGTgt.........................a : 215087 396 : ValLeuArgThrSerIleValTyrPheAsnLeuLeuArgThr : 408 |||:!!|||||||||:!!!.!!:!!!.||| !||||||||| +ValValArgThrSerValAlaPheLeuAsnAlaLeuArgThr 215088 : gGTTGTTCGAACATCGGTTGCCTTCTTAAACGCGTTACgaaca : 215130 vulgar: CbirOr29 297 408 . KQ414889.1 214605 215130 + 248 M 45 135 5 0 2 I 0 119 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 215130 248 + . gene_id 21 ; sequence CbirOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215019 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215019 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 215020 215021 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 215020 215088 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 215087 215088 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 215089 215130 . + . KQ414889.1 exonerate:protein2genome:local exon 215089 215130 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 215130 248 + . alignment_id 21 ; Query CbirOr29 ; Align 214606 298 135 ; Align 214864 343 156 ; Align 215089 395 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 214 Query range: 305 -> 409 Target range: 206050 -> 207604 306 : GluTrpGluAsnSerAspValLeuGlyIleAlaThrTyrPheIleLeuPheIleSerL : 325 ||||||||||||!:!:!!..! !!.!:!! !..!|||.!!! ||| ||||||! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 326 : euSerPheAsnPheLeuIlePheCysTyrIleGlyGluLeuLeuValGluGlu >>> : 343 !!!!||| ! !!!!!|||.!.||||||||||||:!!||||||:!!!!::!! ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 344 : > Target Intron 1 >>>> TyrSerLysIleAlaSerAlaValTyrGlyIleA : 354 81 bp !! ! :!:!.!! !.!! !! ! !:!:| ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 355 : snTrpTyrAspLeuProGlyHisLysAlaLeuHisLeuValMetIleIleThrMetSe : 373 |||||||| !||||||..!... ! |||! ! !:!!:!!:!!||||||.!!||||| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 374 : rGlnTyrProProLysLeuThrAlaGlyLysPheValAspPheSerLeuSerThrPhe : 392 |.!.|||||| !||||||||||||||||||.!. !!!!:.!.||||||:!!!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 393 : SerThr >>>> Target Intron 2 >>>> ValLeuArgThrSerIleValTy : 402 !!! ! 1161 bp |||:!!!:!..!:!!!!:! !|| ThrAsp++ ++ValMetLysValAlaMetGlyTy 206391 : ACCGATgt.........................agGTAATGAAGGTGGCGATGGGATA : 207581 403 : rPheAsnLeuLeuArgThrVal : 409 |||||||:!!|||||| !||| rPheAsnIleLeuArgGluVal 207582 : CTTCAACATACTCCGTGAAGTC : 207604 vulgar: CbirOr29 305 409 . KQ414889.1 206050 207604 + 214 M 37 111 5 0 2 I 0 77 3 0 2 M 52 156 5 0 2 I 0 1157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 207604 214 + . gene_id 22 ; sequence CbirOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206398 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206398 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206399 206400 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206399 207559 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 207558 207559 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 207560 207604 . + . KQ414889.1 exonerate:protein2genome:local exon 207560 207604 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 207604 214 + . alignment_id 22 ; Query CbirOr29 ; Align 206051 306 111 ; Align 206243 343 156 ; Align 207560 395 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 195 Query range: 305 -> 395 Target range: 277371 -> 277713 306 : GluTrpGluAsnSerAspValLeuGlyIleAlaThrTyrPheIleLeuPheIleSerL : 325 ||||||...:!!|||||||||! ! !!!:.!!|||:!!|||!!::!!.!!||||||: GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 326 : euSerPheAsnPheLeuIlePheCysTyrIleGlyGluLeuLeuValGluGlu >>> : 343 !: ||||||...... ! ! |||||||||||||||:!!|||..!|||:!! etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 344 : > Target Intron 1 >>>> TyrSerLysIleAlaSerAlaValTyrGlyIleA : 354 72 bp ! !!.!|||:!!!.!..!!.!|||||| !! | ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 355 : snTrpTyrAspLeuProGlyHisLysAlaLeuHisLeuValMetIleIleThrMetSe : 373 |||||||| !!||||||! ! ! ! !|||:!!|||:!!:!:||||||:!!! || snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 374 : rGlnTyrProProLysLeuThrAlaGlyLysPheValAspPheSerLeuSerThrPhe : 392 |... |||:::||||||||||||...:::......|||:!!! !|||||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 393 : SerThrVal : 395 .!! !||| GlyAspVal 277703 : GGCGATGTA : 277713 vulgar: CbirOr29 305 395 . KQ414889.1 277371 277713 + 195 M 37 111 5 0 2 I 0 68 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277713 195 + . gene_id 23 ; sequence CbirOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277713 195 + . alignment_id 23 ; Query CbirOr29 ; Align 277372 306 111 ; Align 277555 343 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 184 Query range: 272 -> 395 Target range: 234524 -> 235147 273 : PheAlaValAspValGluGluValLeuArgGluMetCysLeuMetGluLeuValAlaA : 292 ||| ! !:!!:!!|||.!.|||:!!!.! !!!:||||||:!:|||||||||!.!. PheIleArgAsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuValGlyC 234525 : TTTATACGGAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGAT : 234582 293 : laThrPheIleIleCysLeuLeuGluTyrTyrIleMetThrGluTrpGluAsnSerAs : 311 .!|||!!.! !!!:|||:!!||||||||||||:!!:!:|||! ! ! ...::: ysThrLeuAsnMetCysMetLeuGluTyrTyrLeuLeuThrValArgPheThrAsnLy 234583 : GCACGTTGAACATGTGCATGCTCGAGTATTATTTACTCACGGTACGTTTTactaataa : 234639 312 : pValLeuGlyIleAlaThrTyrPheIleLeuPheIleSer{Le} >>>> Target : 325 :::||| ||| ::: ... :::... !!{ } 18 sIleLeuArgIle***SerAsn***PheLysTyrPheArg{Ly}++ 234640 : aattcttcgaatttaatcaaactaatttaaatactttaGA{AA}gt............ : 234685 326 : Intron 1 >>>> {u}SerPheAsnPheLeuIlePheCysTyrIleGlyGluLeuL : 339 0 bp {!}!!!||||||......||||||||||||||||||||| !| +-{s}ThrPheAsnIlePheIlePheCysTyrIleGlyGluThrL 234686 : .............at{G}ACATTtaatatattcatattttgttACATCGGAGAGACGC : 234903 340 : euValGluGluTyrSerLys{I} >>>> Target Intron 2 >>>> {le}Al : 347 ||..!|||:!! .!!..!{.} 74 bp {!!}!. euThrGluGlnValGlySer{P}+- ++{he}Gl 234904 : TTACAGAGCAGGTAGGATCA{T}ga.........................ag{TC}GG : 235001 348 : aSerAlaValTyrGlyIleAsnTrpTyrAspLeuProGlyHisLysAlaLeuHisLeu : 366 !..! !|||||| !! !.!.|||||| |||||| ! ! ! |||||| !||| yGluLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeu 235002 : AGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTG : 235058 367 : ValMetIleIleThrMetSerGlnTyrProProLysLeuThrAlaGlyLysPheValA : 386 ||||||||||||:!!! !|||... ! !|||:!!|||||||||||||||:!!. ValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheLeuG 235059 : GTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTAC : 235118 387 : spPheSerLeuSerThrPheSerThrVal : 395 !..!.|||:!!:!!||||||.!! !||| lnMetSerValAlaThrPheGlyAspVal 235119 : AAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: CbirOr29 272 395 . KQ414889.1 234524 235147 + 184 M 52 156 S 0 2 5 0 2 I 0 176 3 0 2 S 1 1 M 20 60 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234525 235147 184 + . gene_id 24 ; sequence CbirOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234525 234682 . + . KQ414889.1 exonerate:protein2genome:local exon 234525 234682 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234683 234684 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234683 234862 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234861 234862 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 234863 234924 . + . KQ414889.1 exonerate:protein2genome:local exon 234863 234924 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234925 234926 . + . intron_id 2 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 234925 234998 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234997 234998 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234999 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234999 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234525 235147 184 + . alignment_id 24 ; Query CbirOr29 ; Align 234525 273 156 ; Align 234864 326 60 ; Align 235001 347 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 282 -> 351 Target range: 286809 -> 287016 283 : GluMetCysLeuMetGluLeuValAlaAlaThrPheIleIleCysLeuLeuGluTyrT : 302 !!::!!|||! ! .!. !||| !|||! !.!! !.!! !:!!! !..!! ! AspLeuCysTyrTyrHisThrValMetAlaIleIleAlaPheValMetTyrSerLeuS 286810 : GACTTGTGTTATTACCATACTGTAATGGCAATAATTGCATTCGTCATGTACTCGTTGT : 286867 303 : yrIleMetThrGluTrpGluAsnSerAspValLeuGlyIleAlaThrTyrPheIleLe : 321 :!!.!. !|||||||||.!.|||!!:..!:!!|||! !||||||! !! || erValPhe***GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLe 286868 : CAGTTTTCTAGGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTT : 286924 322 : uPheIleSerLeuSerPheAsnPheLeuIlePheCysTyrIleGlyGluLeuLeuVal : 340 |.!.:!!|||!!!!!!|||||| !!!!!|||.!!|||||||||||||||:!!||| ! uLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSer 286925 : GCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCC : 286981 341 : GluGluTyrSerLysIleAlaSerAlaValTyr : 351 |||::: |||...|||.!!:!!||| GluGlnValPhePheIleThrSerThrIleTyr 286982 : GAACaggtatttttcattacttcaACGATCTAT : 287016 vulgar: CbirOr29 282 351 . KQ414889.1 286809 287016 + 134 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286810 287016 134 + . gene_id 25 ; sequence CbirOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 286810 287016 . + . KQ414889.1 exonerate:protein2genome:local exon 286810 287016 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286810 287016 134 + . alignment_id 25 ; Query CbirOr29 ; Align 286810 283 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 344 -> 405 Target range: 287069 -> 287252 345 : LysIleAlaSerAlaValTyrGlyIleAsnTrpTyrAspLeuProGlyHisLysAlaL : 364 |||:!!!.!! !:!!..!||| !|||:!!|||||| !||||||||| ! ! !|||! LysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaG 287070 : AAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTC : 287127 365 : euHisLeuValMetIleIleThrMetSerGlnTyrProProLysLeuThrAlaGlyLy : 383 ! !|||:!!:!!|||.!!.!!:!!|||.!.! ! !! !||||||||||||||||| lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 287128 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 287184 384 : sPheValAspPheSerLeuSerThrPheSerThrValLeuArgThrSerIleValTyr : 402 |.!!:!!|||.!!|||||||||!:!|||!!!!:!||| !! !! !!:!:!! !||| sIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 287185 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 287241 403 : PheAsnLeu : 405 !:!:!!||| TyrHisLeu 287242 : TATCATTTG : 287252 vulgar: CbirOr29 344 405 . KQ414889.1 287069 287252 + 130 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287070 287252 130 + . gene_id 26 ; sequence CbirOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287070 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287070 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287070 287252 130 + . alignment_id 26 ; Query CbirOr29 ; Align 287070 345 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 295 -> 342 Target range: 219298 -> 219439 296 : IleCysLeuLeuGluTyrTyrIleMetThrGluTrpGluAsnSerAspValLeuGlyI : 315 ::: ||| :::::: ... !||||||:!!:::!:!|||||| !.!! ValAsnLeuTyrLysPheGluTyrGln***GluTrpLysSerAsnAspValThrSerA 219299 : gttaatttgtataaatttgaatatcaatAGGAATGGAAATCGAATGATGTAACGAGTG : 219356 316 : leAlaThrTyrPheIleLeuPheIleSerLeuSerPheAsnPheLeuIlePheCysTy : 334 !!.!||||||.!!||||||.!!|||||||||:::||||||......||||||||||| laValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTy 219357 : CAGTGACATACATCATTCTACTTATATCCCTcactttcaacattttcatattttgcta : 219413 335 : rIleGlyGluLeuLeuValGluGlu : 342 ||||||||||:!!:!!!.!|||:!: rIleGlyGluIleValAlaGluGln 219414 : CATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: CbirOr29 295 342 . KQ414889.1 219298 219439 + 123 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219299 219439 123 + . gene_id 27 ; sequence CbirOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219299 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219299 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219299 219439 123 + . alignment_id 27 ; Query CbirOr29 ; Align 219299 296 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 305 -> 342 Target range: 224323 -> 224434 306 : GluTrpGluAsnSerAspValLeuGlyIleAlaThrTyrPheIleLeuPheIleSerL : 325 ||||||...:::||| !!:!! !.!! !.!|||||||||||||||.!!!!:|||| GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 326 : euSerPheAsnPheLeuIlePheCysTyrIleGlyGluLeuLeuValGluGlu : 342 ||:::||||||......||||||||||||||||||||||||:!!!.!|||::: euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcag : 224434 vulgar: CbirOr29 305 342 . KQ414889.1 224323 224434 + 120 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224434 120 + . gene_id 28 ; sequence CbirOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224434 120 + . alignment_id 28 ; Query CbirOr29 ; Align 224324 306 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 344 -> 401 Target range: 254280 -> 254451 345 : LysIleAlaSerAlaValTyrGlyIleAsnTrpTyrAspLeuProGlyHisLysAlaL : 364 |||:!!!.!..!!.!|||||| !! !:!!|||||| !!|||||| !...!:! !| LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 254281 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 254338 365 : euHisLeuValMetIleIleThrMetSerGlnTyrProProLysLeuThrAlaGlyLy : 383 || !!|||:!!:!!||||||||| |||.!. ! !:!!:!!||||||||||| euAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLy 254339 : TCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaa : 254395 384 : sPheValAspPheSerLeuSerThrPheSerThrValLeuArgThrSerIleVal : 401 |... ...||||||! !||||||.!! !||| !..!|||!:!:!!||| sIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeuVal 254396 : aatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTTGTT : 254451 vulgar: CbirOr29 344 401 . KQ414889.1 254280 254451 + 115 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254281 254451 115 + . gene_id 29 ; sequence CbirOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254281 254451 . + . KQ414889.1 exonerate:protein2genome:local exon 254281 254451 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254281 254451 115 + . alignment_id 29 ; Query CbirOr29 ; Align 254281 345 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 301 -> 342 Target range: 210651 -> 210774 302 : TyrIleMetThrGluTrpGluAsnSerAspValLeuGlyIleAlaThrTyrPheIleL : 321 !:!:!!:!: !||||||!!:::!!.!||| !:!!.!!! ! !||||||.!.:!!| PheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValL 210652 : TTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTAC : 210709 322 : euPheIleSerLeuSerPheAsnPheLeuIlePheCysTyrIleGlyGluLeuLeuVa : 340 ||.!!! !|||:!!!!!||||||.!!!!!|||||||||||||||||||||:!!|||!. euLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAl 210710 : TCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGC : 210766 341 : lGluGlu : 342 !|||:!: aGluGln 210767 : TGAACAg : 210774 vulgar: CbirOr29 301 342 . KQ414889.1 210651 210774 + 114 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210652 210774 114 + . gene_id 30 ; sequence CbirOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 210652 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210652 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210652 210774 114 + . alignment_id 30 ; Query CbirOr29 ; Align 210652 302 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 302 -> 345 Target range: 264528 -> 264657 303 : IleMetThrGluTrpGluAsnSerAspValLeuGlyIleAlaThrTyrPheIleLeuP : 322 :!!.!. !|||||||||!:! |||::: ...:::..!|||||||||!!::!!. ValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleL 264529 : GTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATAC : 264586 323 : heIleSerLeuSerPheAsnPheLeuIlePheCysTyrIleGlyGluLeuLeuValGl : 341 !.||||||:!!!!! !|||.!!!!!:!!.!.|||||||||||||||:!!|||..!|| euIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGl 264587 : TGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGA : 264643 342 : uGluTyrSerLys : 345 |::: ||| uGlnValIleLys 264644 : Gcaggtaattaaa : 264657 vulgar: CbirOr29 302 345 . KQ414889.1 264528 264657 + 113 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264529 264657 113 + . gene_id 31 ; sequence CbirOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264529 264657 . + . KQ414889.1 exonerate:protein2genome:local exon 264529 264657 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264529 264657 113 + . alignment_id 31 ; Query CbirOr29 ; Align 264529 303 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 344 -> 400 Target range: 238634 -> 238802 345 : LysIleAlaSerAlaValTyrGlyIleAsnTrpTyrAspLeuProGlyHisLysAlaL : 364 |||:!!!.!..!!.!|||||| !! !:!!|||||| !!|||||| !...!:! !| LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 238635 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 238692 365 : euHisLeuValMetIleIleThrMetSerGlnTyrProProLysLeuThrAlaGlyLy : 383 || !!|||:!!:!!||||||! ! |||.!. ! !|||:!!||||||||||| euAspLeuIleLeuIleIleLysArgSerAsnValValValLysValThrAlaGlyLy 238693 : TCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCACCGCTGGAAA : 238749 384 : sPheValAspPheSerLeuSerThrPheSerThrValLeuArgThrSerIle : 400 | ! :!! !!.!.||||||! !||||||.!! !||| !..!|||!:!:!! sValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeu 238750 : AGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTT : 238802 vulgar: CbirOr29 344 400 . KQ414889.1 238634 238802 + 109 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238635 238802 109 + . gene_id 32 ; sequence CbirOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238635 238802 . + . KQ414889.1 exonerate:protein2genome:local exon 238635 238802 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238635 238802 109 + . alignment_id 32 ; Query CbirOr29 ; Align 238635 345 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 305 -> 341 Target range: 272836 -> 272944 306 : GluTrpGluAsnSerAspValLeuGlyIleAlaThrTyrPheIleLeuPheIleSerL : 325 |||||| :!! !||| !!! !.!!:!!.!!|||||||||!!::!!.!!||||||: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 326 : euSerPheAsnPheLeuIlePheCysTyrIleGlyGluLeuLeuValGlu : 341 !::::||||||......||| |||||||||||||||:!!|||..!||| etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGlu 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAG : 272944 vulgar: CbirOr29 305 341 . KQ414889.1 272836 272944 + 109 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 272944 109 + . gene_id 33 ; sequence CbirOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272837 272944 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272944 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 272944 109 + . alignment_id 33 ; Query CbirOr29 ; Align 272837 306 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 341 -> 395 Target range: 264723 -> 264885 342 : GluTyrSerLysIleAlaSerAlaValTyrGlyIleAsnTrpTyrAspLeuProGlyH : 361 :!!! !!.!|||:!!!.!..!!.!|||||| ! ||||||||| !!|||||| ! GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 362 : isLysAlaLeuHisLeuValMetIleIleThrMetSerGlnTyrProProLysLeuTh : 380 ! ! !||| !!|||:!!:!:|||||| !! |||... ! !|||!!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 381 : rAlaGlyLysPheValAspPheSerLeuSerThrPheSerThrVal : 395 ||||||||||.!.:!! !!.!.|||:!!! !||||||||| !||| rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: CbirOr29 341 395 . KQ414889.1 264723 264885 + 102 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264885 102 + . gene_id 34 ; sequence CbirOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264885 102 + . alignment_id 34 ; Query CbirOr29 ; Align 264724 342 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 802 Query range: 18 -> 392 Target range: 232450 -> 235147 19 : AspThrGluTyrSerIleGlnProIleArgTrpLeuLeuArgProIleSerValTrpP : 38 ||| !||||||||||||||| !! !||||||!!!|||! !|||!!:.!!!.!|||| AspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpP 232451 : GACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGC : 232508 39 : ro<-><-><->ValSerSerIleLysGluArgIleLeuSerAlaValLeuLeuIleVa : 54 || ! !!!!|||! ! :!!!:!:!!|||:!! !:!!||| !:!!.. roArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuTh 232509 : CGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCAC : 232565 55 : lCysValPheLeuIleAlaGlyThrLeuValProCysAlaLeuAlaIlePheLeuAsp : 73 !||| !! !|||!!: !..!:!!:!!||||||||| !||| !||| ||| ! rCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIle---LeuPhe 232566 : CTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATC---CTGTTC : 232619 74 : GlnAsnLysAspValGluThrLysValArgAspPheGlyProLeuSerAsnTrpValL : 93 :!!:!!! !..!:!!||| !!:!:!!!:!..!.!!||||||:!!|||:!!!:::!!: GluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuM 232620 : GAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGA : 232679 94 : euAlaSerLeuLysTyrCysSerLeuLeuSerHisValGlyAspIleArgArgCysLe : 112 !!!.!..!|||!!.||||||!!!||||||:!! ! !.!..!||||||! ! !|||:! etGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysVa 232680 : TGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGT : 232736 113 : uGluHisValAspAlaAspTrpArgAlaValThrLysHisGluAspArgGluMetMet : 131 !|||!!.||| ! !||||||||| !|||! !|||! !! !!|||!!::!!||| lGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMet 232737 : GGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATG : 232793 132 : LeuArgAsnAlaLysIleGlyArgPheIleAlaLeuPheAlaAlaLeuPheMetHisS : 151 |||!:!|||||||||:!!||||||! ||||||! !.!!||||||!!!! !||||||! LeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisT 232794 : TTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACA : 232853 152 : erGlyValPheSerTyrSerIlePheGlnAlaMetThrMetAsnGluSerValLeuGl : 170 !!|||||| !||| !!..!||| !! !!.!:!: !|||!:! !! ! !:!!|| hrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGl 232854 : CCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGG : 232910 171 : yAspAsnAla<->SerMetHisSerLeuProPheAlaPheTyrAspLysIleLeuAsp : 188 |:!!.!.::! ||||||:!! !!||||||! !.!!|||||| |||:!::!!||| yAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAsp 232911 : GAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGAC : 232967 189 : ThrThrThrSerProThrTyrGluIleValPheIleMetGlnPheLeuSerThrPheV : 208 |||! ! !||||||||| !!||||||:!!|||:!!:!:|||! !|||||| !|||: ThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheI 232968 : ACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCA : 233027 209 : alValAsnSerValAlaValSerThrValSerLeuIleAlaValPheValMetHisAl : 227 !!||||||||||||.!!|||.!!.!! !.!!||| !||||||.!.!.!|||||||| leValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAl 233028 : TCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGC : 233084 228 : aCysGlyGlnIleLysIleLeuIleSerLeuLeuGluAsnPheValAspGluThrSer : 246 ||||||||||:!:!!.:!::!!!!:||| !|||!!::!!!!.||||||! !! !.!! aCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGly 233085 : GTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGG : 233141 247 : GluLysTrpGluAsnSerThrGlnGlyLysTyrAlaValIleValGluHisHisLeuA : 266 :!!:!! |||!.. !.!!||| !!|||! !.! !!||||||||||||||||||| GlnGlu---GluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuA 233142 : CAGGAG---GAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGC : 233198 267 : rgValLeu{Se} >>>> Target Intron 1 >>>> {r}PheValSerTyrIl : 274 ||..!|||{||} 1315 bp {|}|||:!! !! !!|| rgThrLeu{Se}++ ++{r}PheIleArgAsnIl 233199 : GTACATTA{AG}gt.........................ag{T}TTTATACGGAATAT : 234537 275 : eAspLysIleThrAsnIleIleCysLeuValGluValMetGlyCysThrLeuHisMet : 293 |!!:!!.:!!! !|||:!!|||||||||||||||:!!:!:||||||||||||:!!||| eGluAsnValMetAsnLeuIleCysLeuValGluLeuValGlyCysThrLeuAsnMet 234538 : AGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACGTTGAACATG : 234594 294 : CysLeuLeuGlyTyrTyrCysIleMetAspTrpThr >>>> Target Intron 2 : 306 |||:!!|||! !||||||! :!! ||| 189 bp CysMetLeuGluTyrTyrLeuLeu---------Thr++ 234595 : TGCATGCTCGAGTATTATTTACTC---------ACGgt.................... : 234626 307 : >>>> GlnGlyAspLysGluSerIleValSerTyrValIleIleLeuIleSerVal : 322 :!! ...||||||...:::..!||||||||||||:!:! !:!:|||:!! ++GluLysSerLysGluLysLeuAlaSerTyrValIleValTyrValSerMet 234627 : .....agGAAAAgtcgaaggaaaaattagCTTCATACGTCATCGTGTACGTGTCCATG : 234861 323 : ThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln >>>> : 340 ||||||||||||||||||||||||||||||||||||! |||!!!|||||| ThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGln++ 234862 : ACATTtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGCAGgt..... : 234917 341 : Target Intron 3 >>>> CysGlyGlnIleGlyAspThrAlaTyrMetThrAsn : 351 74 bp ||| !:!!:!!|||!!:! !!.!|||||||||.!. ++CysThrLysValGlyGluLysValTyrMetThrGlu 234918 : ....................agTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAA : 235022 352 : TrpTyrLeuLeuArgArgAsnAsnAlaValGlyPheValLeuIleIleLeuLysSerA : 371 ||||||! !|||! !!.!!!.!.!|||:!!|||!!.|||:!!||||||! !!:!|||! TrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerS 235023 : TGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGA : 235082 372 : snValValValLysIleThrAlaGlyLysMetIleGluLeuSerLeuSerThrPheGl : 390 :!:!!|||:!!||||||||||||||||||.!.:!!:!!:!!|||:!!:!!|||||||| erMetValIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGl 235083 : GCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGG : 235139 391 : yAspVal : 392 ||||||| yAspVal 235140 : CGATGTG : 235147 vulgar: CbirOr26 18 392 . KQ414889.1 232450 235147 + 802 M 20 60 G 0 9 M 32 96 G 1 0 M 102 306 G 0 3 M 75 225 G 1 0 M 19 57 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 32 96 G 3 0 M 1 3 5 0 2 I 0 185 3 0 2 M 34 102 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232451 235147 802 + . gene_id 1 ; sequence CbirOr26 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232451 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232451 233208 . + . insertions 12 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234623 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232451 235147 802 + . alignment_id 1 ; Query CbirOr26 ; Align 232451 19 60 ; Align 232520 39 96 ; Align 232616 72 306 ; Align 232925 174 225 ; Align 233150 250 57 ; Align 234525 270 96 ; Align 234621 305 3 ; Align 234813 306 102 ; Align 234989 340 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 761 Query range: 14 -> 403 Target range: 284502 -> 287255 15 : SerTyrAlaAspAspThrGluTyrSerIleGlnProIleArgTrpLeuLeuArgProI : 34 !!!!::! ! ||| ! !||||||:!!||| !! !||||||!!!|||!:!|||| ThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProI 284503 : ACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGA : 284560 35 : leSerValTrpProValSer<-><-><->SerIleLysGluArgIleLeuSerAlaVa : 50 ||.!!|||||||||:!!||| !!!! ! !|||!:!||| !|||!.!|| leGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValVa 284561 : TTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGT : 284617 51 : lLeuLeuIleValCysValPheLeuIleAlaGlyThrLeuValProCysAlaLeuAla : 69 |||| !:!!:!! !! !|||||||||!.! ! !||||||||||||||||||..! lLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCys 284618 : CCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGC : 284674 70 : IlePheLeuAspGlnAsnLysAspValGluThrLysValArgAspPheGlyProLeuS : 89 ! ! ! ||||||:!!!.! |||:!!!!:||||||:!!!:! .!!|||||||||| ThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuS 284675 : ACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGA : 284734 90 : erAsnTrpValLeuAlaSerLeuLysTyrCysSerLeuLeuSerHisValGlyAspIl : 108 || !!! :!!:!!|||:!!:!!||||||! !! !|||:!!|||!.!! !||| ! || erPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIl 284735 : GTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGAT : 284791 109 : eArgArgCysLeuGluHisValAspAlaAspTrpArgAlaValThrLysHis<-><-> : 126 | !!!:!|||:!!:!! !!:!! !||||||||| ! !..! !..!||| eGlyGlnCysValLysAspIleArgAlaAspTrpSerLeuThrLeuSerHisSerGln 284792 : CGGCCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaa : 284848 127 : <->GluAspArgGluMetMetLeuArgAsnAlaLysIleGlyArgPheIleAlaLeuP : 144 |||:::||||||:::||| ! !!:!|||!:!|||||||||! !:!:|||:!!| GluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIleP 284849 : gaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCT : 284908 145 : heAlaAlaLeuPheMetHisSerGlyValPheSerTyrSerIlePheGlnAlaMetTh : 163 ||..!||| !||||||:!!||||||! !|||! !|||!!!! ! ..! !!:!! heCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCy 284909 : TCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTG : 284965 164 : rMetAsnGluSerValLeuGlyAspAsnAlaSerMetHisSerLeuProPheAlaPhe : 182 !! ...!!!! !:!! !||||||! !!!!:!!...|||! ! !!||| !!.!! sThrValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIle 284966 : CACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATC : 285022 183 : TyrAspLysIleLeuAspThrThrThrSerProThrTyrGluIleValPheIleMetG : 202 ||| ! :!!|||||| !! !|||||||||:!!!:!||||||||| .!!|||| TyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetG 285023 : TATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGC : 285082 203 : lnPheLeuSerThrPheValValAsnSerValAlaValSerThrValSerLeuIleAl : 221 ||! !|||:!!.!!||||||:!! !!||||||.!!|||.!!.!! !|||||| !|| lnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAl 285083 : AATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGC : 285139 222 : aValPheValMetHisAlaCysGlyGlnIleLysIleLeuIleSerLeuLeuGluAsn : 240 ||||||||||||||||!.!|||||||||.!!!:!||||||:!:!!! !|||!!:!!. aValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLys 285140 : TGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAG : 285196 241 : PheValAspGluThrSerGluLysTrpGluAsnSerThr<->GlnGlyLysTyrAlaV : 259 .!!||||||! !..!!.!! !!:! !! ! |||||| :!! !::! !.!! LeuValAspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyA 285197 : CTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAG : 285256 260 : alIleValGluHisHisLeuArgValLeu{Se} >>>> Target Intron 1 >> : 269 !|||:!!||||||||||||!:!:!!|||{.!} 1411 bp spIleIleGluHisHisLeuLysIleLeu{Gl}++ 285257 : ATATCATCGAGCATCATCTGAAGATACTG{GG}gt....................... : 285290 270 : >> {r}PheValSerTyrIleAspLysIleThrAsnIleIleCysLeuValGluVal : 286 {!}|||:!!||| ! |||!!: !:!! !||| !||||||!!!||||||||| ++{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluVal 285291 : ..ag{T}TTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTG : 286748 287 : MetGlyCysThrLeuHisMetCysLeuLeuGlyTyrTyrCysIleMet >>>> Tar : 303 !!:||||||||||||:!!!!:|||!!!||||||||||||! :!:! ! IleGlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeuThr++ 286749 : ATTGGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTACTGACGgt........ : 286801 304 : get Intron 2 >>>> AspTrpThrGlnGlyAspLysGluSerIleValSerTyr : 315 80 bp !!:||| !|||.!!!!:! !.!!! :!!!!!||| ++GluTrpGluGlnSerGluThrIleGlyThrIleThrTyr 286802 : .................agGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTAT : 286915 316 : ValIleIleLeuIleSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluI : 335 !! :!:|||:!!||| !!|||||||||:!!||||||.!!|||||||||||||||| CysThrLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluI 286916 : TGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAA : 286975 336 : leLeuSerGluGln >>>> Target Intron 3 >>>> CysGlyGlnIleGly : 344 |||||||||||||| 74 bp ||| !:!!:!!||| leLeuSerGluGln++ ++CysLeuLysValGly 286976 : TTCTCTCCGAACaggt.........................agtGCTTAAAAGTCGGC : 287076 345 : AspThrAlaTyrMetThrAsnTrpTyrLeuLeuArgArgAsnAsnAlaValGlyPheV : 364 :!!.!!||||||! !:!!||||||! !|||! ! !!!!.!..||| !|||!!.: LeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuI 287077 : TTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGA : 287136 365 : alLeuIleIleLeuLysSerAsnValValValLysIleThrAlaGlyLysMetIleGl : 383 !!||||||.!! ! !|||||| ! !:!!|||:!!||||||||||||!!:|||!! leLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAs 287137 : TACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGA : 287193 384 : uLeuSerLeuSerThrPheGlyAspValIleLysSerAlaValAlaTyrLeuAsnIle : 402 :||||||||||||!:!||| !!..!|||! !! ! ! !:!!:!!|||! !:!!:!: pLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 287194 : TCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 287250 403 : Phe : 403 !:: Tyr 287251 : Tac : 287255 vulgar: CbirOr26 14 403 . KQ414889.1 284502 287255 + 761 M 26 78 G 0 9 M 85 255 G 0 9 M 128 384 G 0 3 M 15 45 S 0 2 5 0 2 I 0 1407 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284503 287255 761 + . gene_id 2 ; sequence CbirOr26 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284503 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284503 285287 . + . insertions 21 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286698 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287255 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287255 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284503 287255 761 + . alignment_id 2 ; Query CbirOr26 ; Align 284503 15 78 ; Align 284590 41 255 ; Align 284854 126 384 ; Align 285241 254 45 ; Align 286700 270 99 ; Align 286879 303 111 ; Align 287064 340 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 748 Query range: 14 -> 403 Target range: 278555 -> 280468 15 : SerTyrAlaAspAspThrGluTyrSerIleGlnProIleArgTrpLeuLeuArgProI : 34 !!!!:: ! ||| ! !||||||:!!||| !! !||||||!!!|||!:!|||| ThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProI 278556 : ACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGA : 278613 35 : leSerValTrpProValSer<-><-><->SerIleLysGluArgIleLeuSerAlaVa : 50 ||.!!|||||||||:!!||| !!!! ! !|||!:!||| !|||!.!|| leGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValVa 278614 : TTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGT : 278670 51 : lLeuLeuIleValCysValPheLeuIleAlaGlyThrLeuValProCysAlaLeuAla : 69 |||| !:!!:!! !! !|||||||||!.! ! !||||||||||||||||||..! lLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCys 278671 : CCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGC : 278727 70 : IlePheLeuAspGlnAsnLysAspValGluThrLysValArgAspPheGlyProLeuS : 89 ! ! ! ||||||:!!!.! |||:!!!!:||||||:!!!:! .!!|||||||||| ThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuS 278728 : ACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAA : 278787 90 : erAsnTrpValLeuAlaSerLeuLysTyrCysSerLeuLeuSerHisValGlyAspIl : 108 || !!! ..!:!!|||!!!:!!||||||! !! !|||:!!|||!.!! !||| ! || erPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIl 278788 : GTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGAT : 278844 109 : eArgArgCysLeuGluHisValAspAlaAspTrpArg<-><-><->AlaValThrLys : 124 | !!!:!|||:!!.!. !!:!! !.!!|||||| ! :!! ! ::: eGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGln 278845 : CGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaa : 278901 125 : HisGluAspArgGluMetMetLeuArgAsnAlaLysIleGlyArgPheIleAlaLeuP : 144 ...|||:::||||||:::||| ! !!:!|||!:!|||||||||! !:!:|||:!!| GluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIleP 278902 : gaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCT : 278961 145 : heAlaAlaLeuPheMetHisSerGlyValPheSerTyrSerIlePheGlnAlaMetTh : 163 ||::!||| !||||||:!!||||||! ! !!! !|||!!! ! ! ..! !!:!! heSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPh 278962 : TCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTT : 279018 164 : rMetAsnGluSerValLeuGlyAspAsnAlaSerMetHisSerLeuProPheAlaPhe : 182 ! ...!!!! !:!! !||||||! !!!!:!!...|||! ! !!||| !!.!! eAlaValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIle 279019 : CGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATC : 279075 183 : TyrAspLysIleLeuAspThrThrThrSerProThrTyrGluIleValPheIleMetG : 202 ||| ! :!!|||||| !! !|||||||||:!!!:!||||||||| .!!|||| TyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetG 279076 : TATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGC : 279135 203 : lnPheLeuSerThrPheValValAsnSerValAlaValSerThrValSerLeuIleAl : 221 ||! !|||:!!.!!||||||:!! !!||||||.!!|||.!!.!! !||||||||||| lnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAl 279136 : AATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGC : 279192 222 : aValPheValMetHisAlaCysGlyGlnIleLysIleLeuIleSerLeuLeuGluAsn : 240 ||||||||||||||||!.!|||||||||.!!!:!||||||:!:!!! !|||!!:!!. aValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLys 279193 : TGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAG : 279249 241 : PheValAspGluThrSerGluLysTrpGluAsnSerThr<->GlnGlyLysTyrAlaV : 259 .!!:!!|||! !..!!.!! !!:! !... |||||| :!! !::! !.!! LeuIleAspGlyValLysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyA 279250 : CTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAG : 279309 260 : alIleValGluHisHisLeuArgValLeu{Se} >>>> Target Intron 1 >> : 269 !|||:!!||||||||||||!:!:!!|||{.!} 571 bp spIleIleGluHisHisLeuLysIleLeu{Gl}++ 279310 : ATATCATCGAGCATCATCTGAAGATACTG{GG}gt....................... : 279343 270 : >> {r}PheValSerTyrIleAspLysIleThrAsnIleIleCysLeuValGluVal : 286 {!}|||:!!||| ! |||!!: !:!! !||| !||||||!!!||||||||| ++{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluVal 279344 : ..ag{T}TTTATATCGCAAATCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTG : 279961 287 : MetGlyCysThrLeuHisMetCysLeuLeuGlyTyrTyrCysIleMet >>>> Tar : 303 !!:||||||||||||:!!!!:|||!!!||| !||||||! :!!! ! IleGlyCysThrLeuAsnIleCysPheLeuThrTyrTyrLeuLeuThr++ 279962 : ATTGGTTGCACGTTGAACATATGCTTTTTGACATATTATTTACTCACGgt........ : 280014 304 : get Intron 2 >>>> AspTrpThrGlnGlyAspLysGluSerIleValSerTyr : 315 80 bp !!:||| !|||..!||| !.!!! !!!!!||| ++GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyr 280015 : .................agGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTAT : 280128 316 : ValIleIleLeuIleSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluI : 335 :!!!!:.!!|||||||||:!!|||||||||:!!||||||.!!|||||||||||||||| LeuMetPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluI 280129 : TTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAA : 280188 336 : leLeuSerGluGln >>>> Target Intron 3 >>>> CysGlyGlnIleGly : 344 |||||||||||||| 74 bp ||| !:!!:!!||| leLeuSerGluGln++ ++CysLeuLysValGly 280189 : TTCTCTCCGAACaggt.........................agTGCTTAAAAGTCGGC : 280289 345 : AspThrAlaTyrMetThrAsnTrpTyrLeuLeuArgArgAsnAsnAlaValGlyPheV : 364 ! :!!.!!||||||! !:!!||||||! !|||! ! !!!!.!!.||| !|||!!.: ValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuI 280290 : GTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGA : 280349 365 : alLeuIleIleLeuLysSerAsnValValValLysIleThrAlaGlyLysMetIleGl : 383 !!||||||.!! ! !|||||| ! !:!!|||:!!||||||||||||!!:|||!! leLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAs 280350 : TACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGA : 280406 384 : uLeuSerLeuSerThrPheGlyAspValIleLysSerAlaValAlaTyrLeuAsnIle : 402 :||||||||||||!:!||| !!..!|||! !! ! ! !:!!:!!|||! !:!!:!: pLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280407 : TCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280463 403 : Phe : 403 !:! Tyr 280464 : TAC : 280468 vulgar: CbirOr26 14 403 . KQ414889.1 278555 280468 + 748 M 26 78 G 0 9 M 80 240 G 0 9 M 133 399 G 0 3 M 15 45 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278556 280468 748 + . gene_id 3 ; sequence CbirOr26 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278556 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278556 279340 . + . insertions 21 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280468 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280468 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278556 280468 748 + . alignment_id 3 ; Query CbirOr26 ; Align 278556 15 78 ; Align 278643 41 240 ; Align 278892 121 399 ; Align 279294 254 45 ; Align 279913 270 99 ; Align 280092 303 111 ; Align 280277 340 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 725 Query range: 14 -> 392 Target range: 256631 -> 258624 15 : SerTyrAlaAspAspThrGluTyrSerIleGlnProIleArgTrpLeuLeuArgProI : 34 !:!!:! !..! !!!:!!!:||||||:!!||| !! !||||||!!!|||!:!|||| AsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 256632 : AATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTA : 256689 35 : leSerValTrpProValSerSer<-><-><->IleLysGluArgIleLeuSerAlaVa : 50 ||.!!!.!|||||| !|||||| ! ! ||||||! !:!!||| !|| leGlyAlaTrpProProSerSerSerThrThrThrLeuGluArgAsnValSerIleVa 256690 : TAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGT : 256746 51 : lLeuLeuIleValCysValPheLeuIleAlaGlyThrLeuValProCysAlaLeuAla : 69 |||| !||||||||| ! !! !||| ! !||||||:!!|||||| !||| ! lLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIleProCysLeuLeuHis 256747 : TTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCAT : 256803 70 : IlePheLeuAspGlnAsnLysAspValGluThrLysValArgAspPheGlyProLeuS : 89 :!!|||||||||.!.:!! ..! !! ! ||||||::::::|||||||||:!!| ValPheLeuAspAspAsp---SerPheTyrMetLysValLysAsnPheGlyProMetS 256804 : GTATTTCTTGACGACGAC---AGTTTCTAcatgaaagtgaaaaatttcggtCCTATGA : 256860 90 : erAsnTrpValLeuAlaSerLeuLysTyrCysSerLeuLeuSerHisValGlyAspIl : 108 ||:!!|||:!!:!!::!!!! !!!.||| ! !||||||! !!!.! ! !||||| erHisTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIl 256861 : GCCATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACAT : 256917 109 : eArgArgCysLeuGluHisValAspAlaAspTrpArgAlaValThrLysHisGluAsp : 127 |||| !|||:!!||||||:!!!!:.!!||||||||| !|||! !!:!.!.:!!||| eArgTyrCysValGluHisIleGluThrAspTrpArgMetValArgArgGluLysAsp 256918 : ACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGAT : 256974 128 : ArgGluMetMetLeuArgAsnAlaLysIleGlyArgPheIleAlaLeuPheAlaAlaL : 147 !:!:!!:!!|||:!!!:!||||||!:!.!!||||||!:!:!:||| !|||..!||| GlnGlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaA 256975 : CAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAG : 257034 148 : euPheMetHisSerGlyValPheSerTyrSerIlePheGlnAlaMetThrMetAsnGl : 166 !.!!|||!!.|||||||||||| ::: :::! ..!|||:!!!.!! !.!. laIleMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAsnThrGluIl 257035 : CTATCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGAT : 257091 167 : uSerValLeuGlyAspAsnAlaSer<->MetHisSerLeuProPheAlaPheTyrAsp : 184 !! ! !:!!|||:!!.!..!!!!! :!!!.. !|||||| !!.!! ! ||| ! eIleHisValGlyAsnGluThrThrIleValArgValLeuProValThrValTyrLys 257092 : AATTCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAG : 257148 185 : LysIleLeuAspThrThrThrSerProThrTyrGluIleValPheIleMetGlnPheL : 204 |||:!:|||:!!..! ! !||||||||| !!||||||||| !!.!!|||||| !! LysLeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheMetGlnThrT 257149 : AAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTT : 257208 205 : euSerThrPheValValAsnSerValAlaValSerThrValSerLeuIleAlaValPh : 223 !|||:!!.!!:!!!.!!.!!!! !.!!||||||! ! !!|||||| |||||||| rpSerSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAlaAlaValPh 257209 : GGTCGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTT : 257265 224 : eValMetHisAlaCysGlyGlnIleLysIleLeuIleSerLeuLeuGluAsnPheVal : 242 |!.!! ||||||! !||||||:!:! :!:|||!!:|||! !:!! !.!.|||||| eAlaThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGluPheVal 257266 : TGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTG : 257322 243 : AspGluThrSerGluLysTrpGluAsnSerThrGlnGlyLysTyrAlaValIleValG : 262 :!!|||:!!!!!.!.::: :::... !:!! !.!|||||||||| AsnGluSerArgAsnArgGluLysThrPheProPheLysGlnIleGlyValIleValG 257323 : AATGAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGG : 257382 263 : luHisHisLeuArgValLeuSerPheValSerTyrIleAspLys{I} >>>> Targ : 277 ||||||||||||||||||||!!!! ! !! !! !||| !...{:} luHisHisLeuArgValLeuArg***AspPheCysIleIleSer{V}-+ 257383 : AGCATCATTTAAGAGTGCTGAGGTAAGATTTTTGCATTATTTCC{G}tt......... : 257430 278 : et Intron 1 >>>> {le}ThrAsnIleIleCysLeuValGluValMetGlyCys : 289 76 bp {!:}! !||| !||||||!!!:!!|||:!!.!. !!||| ++{al}MetAsnArgIleCysPheLeuGluLeuPheArgCys 257431 : ................ag{TG}ATGAACCGAATATGTTTTTTAGAGTTGTTTAGATGC : 257539 290 : ThrLeuHisMetCysLeuLeuGlyTyrTyrCysIleMet >>>> Target Intro : 303 |||||| !!!:|||:!!|||||||||||| !:!! ! 684 bp ThrLeuAlaIleCysMetLeuGlyTyrTyrIleLeuAla++ 257540 : ACGCTGGCTATATGCATGCTGGGATACTACATTCTTGCGgt................. : 257583 304 : n 2 >>>> AspTrpThrGlnGlyAspLysGluSerIleValSerTyrValIleIle : 318 :::|||:!! ! ||| ::::::::: |||||| !!!!:||| ++GluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheMetIle 257584 : ........aggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTATGATA : 258310 319 : LeuIleSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerG : 338 |||||||||::::::||||||||||||:::...|||||||||||||||||||||!!!| LeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrG 258311 : CTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATTAACAG : 258370 339 : luGln >>>> Target Intron 3 >>>> CysGlyGlnIleGlyAspThrAla : 347 ||||| 90 bp ||| !:!!:!!||||||..!!.! luGln++ ++CysLysLysValGlyAspValVal 258371 : AACAGgt.........................agTGCAAGAAAGTTGGCGACGTGGTT : 258487 348 : TyrMetThrAsnTrpTyrLeuLeuArgArgAsnAsnAlaValGlyPheValLeuIleI : 367 |||||||||:!!||||||! !|||! ! !!!.!.. !:!!! !!!.:!!|||:!!| TyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLeuValI 258488 : TATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTTGGTAA : 258547 368 : leLeuLysSerAsnValValValLysIleThrAlaGlyLysMetIleGluLeuSerLe : 386 || !::!|||!:!|||||||||:!!|||||||||||||||.........::!|||:! leAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePheHisMetSerIl 258548 : TCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatGTCCAT : 258604 387 : uSerThrPheGlyAspVal : 392 !! !||||||.!!|||||| eTyrThrPheSerAspVal 258605 : TTACACATTCAGCGATGTG : 258624 vulgar: CbirOr26 14 392 . KQ414889.1 256631 258624 + 725 M 27 81 G 0 9 M 34 102 G 1 0 M 98 294 G 0 3 M 102 306 S 0 1 5 0 2 I 0 72 3 0 2 S 1 2 M 25 75 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256632 258624 725 + . gene_id 4 ; sequence CbirOr26 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256632 257427 . + . KQ414889.1 exonerate:protein2genome:local exon 256632 257427 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 257428 257429 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 257428 257503 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257502 257503 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257504 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257504 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256632 258624 725 + . alignment_id 4 ; Query CbirOr26 ; Align 256632 15 81 ; Align 256722 42 102 ; Align 256824 77 294 ; Align 257121 175 306 ; Align 257506 278 75 ; Align 258265 303 111 ; Align 258466 340 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 724 Query range: 14 -> 369 Target range: 259751 -> 262015 15 : SerTyrAlaAspAspThrGluTyrSerIleGlnProIleArgTrpLeuLeuArgProI : 34 |||!:!.!!..! !!!:!!!:||||||:!!||| !! !||||||!!!|||!:!|||| SerPheThrSerHisSerAspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProI 259752 : AGTTTCACTAGCCACAGTGACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGA : 259809 35 : leSerValTrpProValSerSerIleLys<-><-><->GluArgIleLeuSerAlaVa : 50 ||.!!!.!|||||| !|||||| !! ! |||!:!|||:!!|||!.!:! leGlyAlaTrpProProSerSerSerThrThrArgLeuGluLysIleIleSerValIl 259810 : TAGGCGCTTGGCCACCTTCATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTAT : 259866 51 : lLeuLeuIleValCysValPheLeuIleAlaGlyThrLeuValProCysAlaLeuAla : 69 !|||:!!.!!:!!||| ! ! !||| !! !||||||:!!||||||!.!||| ! eLeuIlePheIleCysTyrSerThrIleLeuValThrLeuIleProCysValLeuHis 259867 : CCTGATCTTTATCTGCTACAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCAC : 259923 70 : IlePheLeuAspGlnAsnLysAspValGluThrLysValArgAspPheGlyProLeuS : 89 !!:.!.|||!!::!! :!!..!:!! ! ! !|||..!!:!! .!!|||||||||! MetLeuLeuGluLys---GluSerLeuTyrMetLysThrLysValLeuGlyProLeuT 259924 : ATGCTACTCGAGAAG---GAGAGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTA : 259980 90 : erAsnTrpValLeuAlaSerLeuLysTyrCysSerLeuLeuSerHisValGlyAspIl : 108 !!:!!||| !!:!!!.!!!!:!!!!.||| !!!||||||! !...! ! !!||||| hrHisTrpPheValGlyCysIleAsnTyrThrThrLeuLeuLeuArgGlyArgAspIl 259981 : CCCACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTGTTGAGAGGCAGAGACAT : 260037 109 : eArgArgCysLeuGluHisValAspAlaAspTrpArgAlaValThrLysHisGluAsp : 127 |! !!!!|||:!!|||||||||!!: !||||||||| !:!!|||!:!.!.:!!||| eLeuSerCysValGluHisValGluAsnAspTrpArgIleIleThrArgGluLysAsp 260038 : ACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGAATTATAACGAGGGAGAAGGAT : 260094 128 : ArgGluMetMetLeuArgAsnAlaLysIleGlyArgPheIleAlaLeuPheAlaAlaL : 147 !:!.!.:!!||||||||| !!||||||.!!||||||!:!:!!||| !! !..!||| GlnAsnValMetLeuArgTyrAlaLysPheGlyArgTyrValAlaAlaSerCysAlaA 260095 : CAGAACGTGATGTTGAGATACGCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGG : 260154 148 : euPheMetHisSerGlyValPheSerTyrSerIlePheGlnAlaMetThrMetAsnGl : 166 !|||:!!!!..!!||||||.!.!!!!:!!!!:!: !! !!.!:!!!:!! .!.! laPheValGlnGlyGlyValLeuCysPheCysLeuValThrValLeuSerThrGluVa 260155 : CTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGT : 260211 167 : uSerValLeuGlyAspAsnAlaSer<->MetHisSerLeuProPheAlaPheTyrAsp : 184 !! ! !:!!|||:!!.!..!!!!! :!:||| !||||||! !||| ! ||| ! lIleGlnValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaValTyrLys 260212 : GATACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAA : 260268 185 : LysIleLeuAspThrThrThrSerProThrTyrGluIleValPheIleMetGlnPheL : 204 :!!:!::!!:!!..!!.! !||||||! ! !!|||||||||.!!:!!:!!||||||: GluLeuIleAsnValAsnAspSerProMetAsnGluIleValLeuValValGlnPheV 260269 : GAGCTGATAAACGTGAACGACAGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCG : 260328 205 : euSerThrPheValValAsnSerValAlaValSerThrValSerLeuIleAlaValPh : 223 !!||| !|||:!!||||||||| !.!!|||.!!! ! !!|||||| ||||||.! alSerGlyPheIleValAsnSerSerThrValGlyIlePheSerLeuAlaAlaValLe 260329 : TCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCT : 260385 224 : eValMetHisAlaCysGlyGlnIleLysIleLeuIleSerLeuLeuGluAsnPheVal : 242 ...! |||||||||||||||:!:!!.:!:|||!!:..!! !:!! !.!.|||||| uThrAlaHisAlaCysGlyGlnLeuAsnValLeuMetGluTrpIleThrGluPheVal 260386 : GACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAATGGATCACGGAGTTTGTG : 260442 243 : AspGluThrSerGluLysTrpGluAsnSerThrGlnGlyLysTyrAlaValIleValG : 262 ||||||:!!!!!.!.!:! !:!!!!.:!! !! !:!! !!.!|||||||||| AspGluSerArgAsnArgLysLysLysAlaProPheLysGluIleGlyValIleValG 260443 : GACGAGTCGAGGAACAGGAAGAAAAAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCG : 260502 263 : luHisHisLeuArgValLeu{Se} >>>> Target Intron 1 >>>> {r}Ph : 270 ||||||||||||||!.!|||{!!} 257 bp {!}|| luHisHisLeuArgAlaLeu{Th}++ ++{r}Ph 260503 : AACATCATTTGAGAGCACTC{AC}gt.........................ag{C}TT : 260783 271 : eValSerTyrIleAspLysIleThrAsnIleIleCysLeuValGluValMetGlyCys : 289 |:!!||| !|||!!: ! :!:! !||| ||||||!!!:!!|||:!!.!. !!||| eIleSerArgIleGluAspValMetAsnArgIleCysPheLeuGluLeuPheArgCys 260784 : CATATCGCGTATCGAGGATGTGATGAACCGGATATGCTTCCTGGAGTTGTTCAGGTGC : 260840 290 : ThrLeuHisMetCysLeuLeuGlyTyrTyrCysIleMet >>>> Target Intro : 303 |||||| !!!!:|||||||||||||||||| !:!!||| 852 bp ThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeuMet++ 260841 : ACTCTGGATATATGTCTACTTGGCTACTATATTCTTATGgt................. : 260884 304 : n 2 >>>> AspTrpThrGlnGlyAspLysGluSerIleValSerTyrValIleIle : 318 !!:|||.!!:!! !|||! !:!!!:!:!: !!!!||| !!!!:!!: ++GluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheMetMet 260885 : ........agGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCATGATG : 261779 319 : LeuIleSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerG : 338 ||||||:!!:!! !||||||:!!||||||.!!|||||||||||||||||||||!!!| LeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLeuThrG 261780 : CTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACTAACGG : 261839 339 : luGln >>>> Target Intron 3 >>>> CysGlyGlnIleGlyAspThrAla : 347 ||||| 81 bp |||..!:!!:!!||||||..!!.! luGln++ ++CysSerLysValGlyAspValVal 261840 : AACAGgt.........................agTGCTCGAAAGTTGGTGACGTTGTT : 261947 348 : TyrMetThrAsnTrpTyrLeuLeuArgArgAsnAsnAlaValGlyPheValLeuIleI : 367 ||||||||||||||||||! !|||! ! !!!.!:! !:!!! !!!.:!!||||||| TyrMetThrAsnTrpTyrTyrLeuProAspLysSerIleLeuAspLeuIleLeuIleI 261948 : TACATGACAAACTGGTATTATTTACCTGATAAAAGTATCCTTGATTTGATTTTGATCA : 262007 368 : leLeuLys : 369 || !::! leAlaArg 262008 : TTGCACGA : 262015 vulgar: CbirOr26 14 369 . KQ414889.1 259751 262015 + 724 M 29 87 G 0 9 M 31 93 G 1 0 M 99 297 G 0 3 M 94 282 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259752 262015 724 + . gene_id 5 ; sequence CbirOr26 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259752 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259752 260524 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262015 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262015 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259752 262015 724 + . alignment_id 5 ; Query CbirOr26 ; Align 259752 15 87 ; Align 259848 44 93 ; Align 259941 76 297 ; Align 260241 175 282 ; Align 260783 270 99 ; Align 261734 303 111 ; Align 261926 340 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 680 Query range: 13 -> 406 Target range: 217150 -> 219800 14 : PheSerTyrAlaAspAspThrGluTyrSerIleGlnProIleArgTrpLeuLeuArgP : 33 !:!...||| ::: ... ||||||||| !! !||||||||||||!:!| TyrGluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysP 217151 : TACGAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAAC : 217208 34 : roIleSerValTrpProValSerSerIleLysGluArg<-><-><->IleLeuSerAl : 49 ||!!:.!!:!!|||||| !||| !!! !! ||| ||||||! ! roMetGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLy 217209 : CGATGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAA : 217265 50 : aValLeuLeuIleValCysValPheLeuIleAlaGlyThrLeuValProCysAlaLeu : 68 !:!!:!! ! !:!!||| ! !||||||::! ! !!!!|||||||||:!!:!! sLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMet 217266 : ACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATG : 217322 69 : AlaIlePheLeuAspGlnAsnLysAspValGluThrLysValArgAspPheGlyProL : 88 !:!:||||||!!: :!!|||:!! ! !|||:!!!:! |||||||||| TyrValPheLeuGluVal---GluAspLeuTyrAspLysLeuLysLeuPheGlyProL 217323 : TACGTGTTCCTCGAAGTT---GAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGT : 217379 89 : euSerAsnTrpValLeuAlaSerLeuLysTyrCysSerLeuLeuSerHisValGlyAs : 107 ||! ! !!! |||:!!|||! !:!!||||||! !||||||:!! !||| !!.!|| euIlePheCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAs 217380 : TGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGA : 217436 108 : pIleArgArgCysLeuGluHisValAspAlaAspTrpArgAlaValThrLysHisGlu : 126 |||||||..!|||:!!..!...:!!!!: !||||||||| !|||! ! .!.:!! pIleArgGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLys 217437 : CATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAA : 217493 127 : AspArgGluMetMetLeuArgAsnAlaLysIleGlyArgPheIleAlaLeuPheAlaA : 146 ||||||||| !|||:!! !||||||!!..!!|||||| :!:!.!|||.!!..!. AspArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysT 217494 : GACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTA : 217553 147 : laLeuPheMetHisSerGlyValPheSerTyrSerIlePheGlnAlaMetThrMetAs : 165 !!!!!||||||:!!|||||| ||| ||| ! ! !!!!:!:!:!!.. hrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGl 217554 : CCTTCTTCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGG : 217610 166 : nGluSerValLeu<->GlyAspAsnAlaSerMetHisSerLeuProPheAlaPheTyr : 183 ...!! !:!!! ! ..!! ||| !!!!.!. ! !!||| !||| !!||| yArgIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThr 217611 : GAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACG : 217667 184 : AspLysIleLeuAspThrThrThrSerProThrTyrGluIleValPheIleMetGlnP : 203 ! ! |||:!!|||||| ! !!!!|||||| !!||||||||||||.!!:!:|||! LysTyrIleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnL 217668 : AAGTATATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAAT : 217727 204 : heLeuSerThrPheValValAsnSerValAlaValSerThrValSerLeuIleAlaVa : 222 !.:!!:!! ! !:!!:!!:!!.!!:!!.!! !:!!.!! !|||||| |||!. euIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAl 217728 : TGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGC : 217784 223 : lPheValMetHisAlaCysGlyGlnIleLysIleLeuIleSerLeuLeuGluAsnPhe : 241 !|||!.!:!:||||||||||||||||||:!!:!:|||!!:!:!! !|||:!!:!!!!. aPheAlaValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeu 217785 : TTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTA : 217841 242 : ValAspGluThrSerGluLysTrpGluAsnSerThrGlnGlyLysTyrAlaValIleV : 261 :!!|||! ! !:!!!!: !...:!!!!!..!.!.|||!:! !||| !|||| IleAspGlyArgAlaAsp---MetSerAspThrValAspGlyArgIleAlaSerIleV 217842 : ATCGACGGTAGAGCGGAT---ATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCG : 217898 262 : alGluHisHisLeuArgValLeu{Se} >>>> Target Intron 1 >>>> {r : 269 ||...!!.|||:!!|||:!!|||{!.} 1229 bp {! alSerGlnHisValArgIleLeu{Ly}++ ++{s 217899 : TCAGTCAACACGTTCGGATATTA{AA}gt.........................ag{a : 219153 270 : }PheValSerTyrIleAspLysIleThrAsnIleIleCysLeuValGluValMetGly : 288 }|||::::!! !! !!!:!:!! ! !.!. !|||! !!!!!.!||| !!:!:||| }PheLeuThrLeuThrGluArgThrLeuGlnGlnIleSerPheAlaGluPheLeuGly 219154 : }tttttgaCGCTCACAGAGAGAACCCTCCAGCAAATCTCTTTCGCTGAATTTCTAGGA : 219208 289 : CysThrLeuHisMetCysLeuLeuGlyTyrTyrCysIleMet >>>> Target In : 303 ||||||:!! !!!!:||||||:!!||||||||| !|||:!! 76 b CysThrMetAspIleCysLeuValGlyTyrTyrIleIleVal++ 219209 : TGCACCATGGACATATGTCTCGTTGGATATTACATTATCGTGgt.............. : 219255 304 : tron 2 >>>> AspTrpThrGlnGlyAspLysGluSerIleValSerTyrValIle : 317 p !!:|||! !..!..!||| ! !||| !|||!!!|||:!!||| ++GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIle 219256 : ...........agGAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATT : 219371 318 : IleLeuIleSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuS : 337 :!!|||||||||:!:|||||||||||||||||||||||||||||||||||||||:!!: LeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValA 219372 : CTACTTATATCCCTcactttcaacattttcatattttgctaCATAGGAGAGATCGTTG : 219431 338 : erGluGln >>>> Target Intron 3 >>>> CysGlyGlnIleGlyAspThr : 346 !!|||||| 73 bp ||| :::||||||::: laGluGln++ ++CysArgLysIleGlyGluMet 219432 : CTGAACAggt.........................agTGtaggaaaattggagaaatg : 219531 347 : AlaTyrMetThrAsnTrpTyrLeuLeuArgArgAsnAsnAlaValGlyPheValLeuI : 366 :!!||||||! !.!.||||||! !|||! ! !!!!.!!. !:!! !! !||||||! SerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuT 219532 : tCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGA : 219591 367 : leIleLeuLysSerAsnValValValLysIleThrAlaGlyLysMetIleGluLeuSe : 385 !||| !! !|||||| ! !:!!|||:!:|||||||||!!.|||:!!|||||||| hrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSe 219592 : CAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTC : 219648 386 : rLeuSerThrPheGlyAsp >>>> Target Intron 4 >>>> ValIleLysS : 395 |:!!||||||||| !||| 87 bp |||:!!|||! rIleSerThrPheThrAsp++ ++ValValLysT 219649 : TATCAGCACTTTTACCGACgt.........................agGTCGTTAAGA : 219765 396 : erAlaValAlaTyrLeuAsnIlePheArgThrLeu : 406 !!||||||.!!!:!||||||:!!.!.||||||||| hrAlaValThrPheLeuAsnValLeuArgThrLeu 219766 : CTGCAGTCACGTTTCTGAATGTACTACGAACATTG : 219800 vulgar: CbirOr26 13 406 . KQ414889.1 217150 219800 + 680 M 32 96 G 0 9 M 29 87 G 1 0 M 94 282 G 0 3 M 78 234 G 1 0 M 20 60 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 37 111 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 83 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217151 219800 680 + . gene_id 6 ; sequence CbirOr26 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217151 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217151 217923 . + . insertions 12 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219668 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219668 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219669 219670 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219669 219755 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 219754 219755 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219756 219800 . + . KQ414889.1 exonerate:protein2genome:local exon 219756 219800 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217151 219800 680 + . alignment_id 6 ; Query CbirOr26 ; Align 217151 14 96 ; Align 217256 46 87 ; Align 217343 76 282 ; Align 217628 170 234 ; Align 217862 249 60 ; Align 219154 270 99 ; Align 219329 303 111 ; Align 219513 340 156 ; Align 219756 392 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 634 Query range: 14 -> 403 Target range: 212851 -> 215055 15 : SerTyrAlaAspAspThrGluTyrSerIleGlnProIleArgTrpLeuLeuArgProI : 34 !!!|||! ! ! ...... |||||| ! !! !||||||||||||!:!|||! ThrTyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProT 212852 : ACCTACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAA : 212909 35 : leSerValTrpProValSerSerIleLys<-><-><->GluArgIleLeuSerAlaVa : 50 .!!:!!||||||! !!.!||| ! |||!:!! !:!!:!! !:! hrGlyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIleAlaArgLe 212910 : CGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATT : 212966 51 : lLeuLeuIleValCysValPheLeuIleAlaGlyThrLeuValProCysAlaLeuAla : 69 !:!! !! !|||||| ! !||||||!.! ! !:!!:!!||||||::!||| ! uValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyr 212967 : GGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTAC : 213023 70 : IlePheLeuAspGlnAsnLysAspValGluThrLysValArgAspPheGlyProLeuS : 89 :!:||||||||| ! ::::::::: ::::!!..! |||||| !!!!: ValPheLeuAspVal---GluAsnIlePheLysGluIleGluLeuPheGlyIlePheA 213024 : GTGTTCCTCGACGTA---gagaatatatttaaagagaTCGAATTGTTCGGCATTTTTG : 213080 90 : erAsnTrpValLeuAlaSerLeuLysTyrCysSerLeuLeuSerHisValGlyAspIl : 108 !! !!! ||| !||| !! !|||||| !||||||:!! !|||! !! !||||| laPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIl 213081 : CATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATAT : 213137 109 : eArgArgCysLeuGluHisValAspAlaAspTrpArgAlaValThrLysHisGluAsp : 127 ||||! !|||:!!||||||:!! ! !||||||!:! !:!!||| ! .!.|||||| eArgThrCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAsp 213138 : TCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGAC : 213194 128 : ArgGluMetMetLeuArgAsnAlaLysIleGlyArgPheIleAlaLeuPheAlaAlaL : 147 !:!|||!!:||| ! !||||||!...!!|||!:! |||!.! !.!!..!|||! LysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaP 213195 : AAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTT : 213254 148 : euPheMetHisSerGlyValPheSerTyrSerIlePheGlnAlaMetThrMetAsnGl : 166 !!||||||:!!!!!||| !! ! !|||! !:!! !! ! !!!!:!:! !:!!:! hePheMetTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLy 213255 : TCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAA : 213311 167 : uSerValLeuGlyAsp<->AsnAlaSerMetHisSerLeuProPheAlaPheTyrAsp : 184 !! !||| !! !||| |||!.!!!!.!......!:!! ! !! !! !!! sMetValAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSerArg 213312 : AATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGA : 213368 185 : LysIleLeuAspThrThrThrSerProThrTyrGluIleValPheIleMetGlnPheL : 204 |||:!!|||..! ! !||||||..! !!|||||| !!|||:!:!!:|||.!!: PheIleValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleI 213369 : TTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTA : 213428 205 : euSerThrPheValValAsnSerValAlaValSerThrValSerLeuIleAlaValPh : 223 !!:!! ! ! :!!:!!:!!:!!:!!|||||| !.!! !|||||| !|||||||| leAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPh 213429 : TAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTT : 213485 224 : eValMetHisAlaCysGlyGlnIleLysIleLeuIleSerLeuLeuGluAsnPheVal : 242 |!.!:!:|||||||||||||||!!: ||||||!!:|||! !||||||:!!!!.:!! eAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIle 213486 : TGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATA : 213542 243 : AspGluThrSerGluLysTrpGluAsnSerThrGlnGlyLysTyrAlaValIleValG : 262 |||! ! !..!!!:! ! ! :!!||| ..!.!.! !!:! !||||||||||||. AspGlyArgGluAspMetSerLysAsn---ValAspAspArgIleAlaValIleValA 213543 : GACGGTAGAGAGGATATGAGCAAGAAT---GTGGACGACAGAATCGCGGTCATCGTGA : 213599 263 : luHisHisLeuArgValLeu{Se} >>>> Target Intron 1 >>>> {r}Ph : 270 !.!!.|||:!!|||:!!|||{!.} 840 bp {!}|| snGlnHisValArgIleLeu{Ly}++ ++{s}Ph 213600 : ACCAGCATGTGCGGATACTG{AA}gt.........................ag{A}TT : 214463 271 : eValSerTyrIleAspLysIleThrAsnIleIleCysLeuValGluValMetGlyCys : 289 |:!!..! !:!:!!:||| ! !... !:!!! !!!!!.!|||:!!:!:! !||| eLeuGluLeuValGluLysAlaLeuArgGlnValSerPheAlaGluLeuLeuValCys 214464 : CTTAGAGCTCGTGGAGAAAGCACTTCGGCAAGTATCTTTCGCTGAATTATTAGTATGC : 214520 290 : ThrLeuHisMetCysLeuLeuGlyTyrTyrCysIleMet >>>> Target Intro : 303 |||:!!:!!:!:||||||:!!||||||||| |||! ! 68 bp ThrValAsnLeuCysLeuValGlyTyrTyrIleIleThr++ 214521 : ACGGTGAATCTCTGTCTCGTTGGATATTACATAATAACGgt................. : 214564 304 : n 2 >>>> AspTrpThrGlnGlyAspLysGluSerIleValSerTyrValIleIle : 318 :!:|||!.!..!..!:!! ! !!!!! !|||!!!||||||:!::!: ++GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValValLeu 214565 : ........aggAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGGTGTTG : 214675 319 : LeuIleSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerG : 338 ! !||||||:::||||||||||||||||||||||||||||||||||||:!!:!!|||| TyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValSerG 214676 : TATATCTCTCtcactttcaatattttcatattttgttaCATAGGCGAGCTTGTGTCTG : 214735 339 : luGln >>>> Target Intron 3 >>>> CysGlyGlnIleGlyAspThrAla : 347 ||||| 123 bp ||| !:!!:!!|||!!:..!:!! luGln++ ++CysLysLysValGlyGluValSer 214736 : AACAGgt.........................agTGCAAAAAGGTCGGAGAAGTATCG : 214885 348 : TyrMetThrAsnTrpTyrLeuLeuArgArgAsnAsnAlaValGlyPheValLeuIleI : 367 ||||||! !.!.||||||! !|||! ! !!|||!!. !:!! !!! !:!!||||||! TyrMetIleGluTrpTyrArgLeuProGlyAsnLysLysLeuCysCysIleLeuIleM 214886 : TACATGATCGAATGGTACCGATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCA : 214945 368 : leLeuLysSerAsnValValValLysIleThrAlaGlyLysMetIleGluLeuSerLe : 386 !: !! !|||||| ! !||||||.!!|||||||||!!.|||:!!|||||||||:! etAlaMetSerAsnSerSerValLysPheThrAlaGlyAsnMetValGluLeuSerIl 214946 : TGGCAATGTCCAATTCATCCGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTAT : 215002 387 : uSerThrPheGlyAspValIleLysSerAlaValAlaTyrLeuAsnIlePhe : 403 !|||||||||.!!..!|||! !! !.! !:!! !!! ! ...|||||| eSerThrPheSerSerValSerIleLysGlnLeuProLeuTyrThrIlePhe 215003 : CAGCACTTTCAGCAGTGTAAGTATCAAACAACTTCCATTATacacaattttc : 215055 vulgar: CbirOr26 14 403 . KQ414889.1 212851 215055 + 634 M 29 87 G 0 9 M 31 93 G 1 0 M 96 288 G 0 3 M 80 240 G 1 0 M 16 48 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 M 33 99 5 0 2 I 0 64 3 0 2 M 37 111 5 0 2 I 0 119 3 0 2 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212852 215055 634 + . gene_id 7 ; sequence CbirOr26 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212852 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 212852 213621 . + . insertions 12 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214741 214742 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 214741 214863 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 214862 214863 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214864 215055 . + . KQ414889.1 exonerate:protein2genome:local exon 214864 215055 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212852 215055 634 + . alignment_id 7 ; Query CbirOr26 ; Align 212852 15 87 ; Align 212948 44 93 ; Align 213041 76 288 ; Align 213332 172 240 ; Align 213572 253 48 ; Align 214463 270 99 ; Align 214630 303 111 ; Align 214864 340 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 599 Query range: 14 -> 392 Target range: 208191 -> 211932 15 : SerTyrAlaAspAspThrGluTyrSerIleGlnProIleArgTrpLeuLeuArgProI : 34 !:!||| !:!!||| !...!:!!:!:!!!::! !! ! !||| !|||!:! !| AsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuLysIleI 208192 : AACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGAAGATAA : 208249 35 : leSerValTrpProValSerSerIleLysGluArgIleLeuSerAla<-><->ValLe : 51 ||.!! !|||||| !|||! ! !:::... !!:!! !!:!::! :!!|| leGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHisIleLe 208250 : TCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCATATTCT : 208306 52 : uLeuIleValCysValPheLeuIleAlaGlyThrLeuValProCysAlaLeuAlaIle : 70 ||||! !||| ! ! !! !:!: !||| !:!!||| ! .!! ! !.!! uLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGlyMetPhe 208307 : CTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATGTTC : 208363 71 : PheLeuAspGlnAsnLysAspValGluThrLysValArgAspPheGlyProLeuSerA : 90 :!! ! ! !:!!||| !! ! !:!!:!!!:! !! !.!! !!|||||| AlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaLeuSerP 208364 : GCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTCTGAGCT : 208423 91 : snTrpValLeuAlaSerLeuLysTyrCysSerLeuLeuSerHisValGlyAspIleAr : 109 !!:::!!:!!|||! ! !|||||| ! !:!! ! !!.!! !||||||||||| hePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAspIleAr 208424 : TCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGACATACG : 208480 110 : gArgCysLeuGluHisValAspAlaAspTrpArgAlaValThrLysHisGluAspArg : 128 |!:!|||:!!|||:!!|||!!:|||||||||||| !||| ! ! .!.||||||||| gLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGluAspArg 208481 : GAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAGGACAGG : 208537 129 : GluMetMetLeuArgAsnAlaLysIleGlyArgPheIleAlaLeuPheAlaAlaLeuP : 148 :!!!!:|||||| !||||||!...!!!.!||| :!: !:!!.!...!!.! !| LysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysGlyAlaP 208538 : AAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCGGAGCTT : 208597 149 : heMetHisSerGlyValPheSerTyrSerIlePheGlnAlaMetThrMetAsnGluSe : 167 |||||:!!.!!||||||... ||| ||| ! ! !!:!:||| :!!:!! heMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAspLysVa 208598 : TCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGACAAGGT : 208654 168 : rVal<->LeuGlyAspAsnAlaSerMetHisSerLeuProPheAlaPheTyrAspLys : 185 !||| !|||! !||| !!!! ...!!!||| !!:! !! !! ! ! lValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValProLysPhe 208655 : CGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCTAAGTTC : 208711 186 : IleLeuAspThrThrThrSerProThrTyrGluIleValPheIleMetGlnPheLeuS : 205 |||||||||..! ! !||||||..! !!|||||| !!!:!! :!:|||!!.|||| IleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnLeuLeuS 208712 : ATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAATTGTTGT : 208771 206 : erThrPheValValAsnSerValAlaValSerThrValSerLeuIleAlaValPheVa : 224 || !||||||!.!:!!!:!:!!.!!|||.!!.!! !.!!||| !|||:!!.!!!. erGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLeuLeuAl 208772 : CGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCTGCTCGC : 208828 225 : lMetHisAlaCysGlyGlnIleLysIleLeuIleSerLeuLeuGluAsnPheValAsp : 243 !||||||||||||||||||:!::!!||||||!!:|||! !:!!|||!!.!!.|||||| aMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeuValAsp 208829 : GATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTGGTCGAT : 208885 244 : GluThrSerGluLysTrpGluAsnSerThrGlnGlyLysTyrAlaValIleValGluH : 263 ! ! !..!!!::!! !:!!|||! ! !||| !:!! ||| !|||||||||! GlyArgGluAspGluGluLysAsnLeuAspGln---ArgLeuAlaAsnIleValGluG 208886 : GGACGGGAGGACGAGGAGAAGAATTTGGATCAG---AGGTTGGCTAATATCGTGGAGC : 208942 264 : isHisLeuArgValLeu{Se} >>>> Target Intron 1 >>>> {r}PheVa : 271 !.|||:!!||||||:!!{!:} 1536 bp {!}|||:! lnHisValArgValIle{As}++ ++{n}PheIl 208943 : AGCATGTTCGAGTGATC{AA}gt.........................ag{T}TTTAT : 210502 272 : lSerTyrIleAspLysIleThrAsnIleIleCysLeuValGluValMetGlyCysThr : 290 !:!! ! !!!:!!.:!! !:!! |||! |||:!!|||:!!:!!||||||||| eAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGluMetValGlyCysThr 210503 : AGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAATGGTGGGGTGCACT : 210559 291 : LeuHisMetCysLeuLeuGlyTyrTyrCysIleMet >>>> Target Intron 2 : 303 |||:!!||||||!!!|||||||||||| !!:!!: 66 bp LeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210560 : CTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt.................... : 210600 304 : >>>> AspTrpThrGlnGlyAspLysGluSerIleValSerTyrValIleIleLeu : 319 !!:||| !... !||| |||! !:!!!!!|||:!!:!!:!!||| ++GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValLeuLeu 210601 : .....agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTACTCCTC : 210712 320 : IleSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluG : 339 ! !||||||||||||||||||||||||||||||||||||||||||:!:|||:!!|||| ThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAlaGluG 210713 : ACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGCTGAAC : 210772 340 : ln >>>> Target Intron 3 >>>> CysGlyGlnIleGlyAspThrAlaTyr : 348 || 999 bp ! !:!!:!!|||!!:! !:!!||| ln++ ++ThrValLysValGlyGluLysSerTyr 210773 : Aggt.........................agACAGTAAAAGTTGGAGAAAAGTCTTAC : 211798 349 : MetThrAsnTrpTyrLeuLeuArgArgAsnAsnAlaValGlyPheValLeuIleIleL : 368 |||! !:!!||||||! !:!!! ! !!!!.!!.!.!:!!! ! ! !|||!!:|||! MetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValValProLeuMetIleS 211799 : ATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGATGATCT : 211858 369 : euLysSerAsnValValValLysIleThrAlaGlyLysMetIleGluLeuSerLeuSe : 387 !! !|||:!! !..!..!|||||||||||||||!!.:!:|||! ||||||:!!|| erMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleValLeuSerIleSe 211859 : CCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTTCTTTCAATCAG : 211915 388 : rThrPheGlyAspVal : 392 |!:!|||||||||||| rSerPheGlyAspVal 211916 : TAGTTTCGGTGACGTA : 211932 vulgar: CbirOr26 14 392 . KQ414889.1 208191 211932 + 599 M 35 105 G 0 6 M 119 357 G 0 3 M 86 258 G 1 0 M 13 39 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 995 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208192 211932 599 + . gene_id 8 ; sequence CbirOr26 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208192 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208192 208961 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211932 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211932 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208192 211932 599 + . alignment_id 8 ; Query CbirOr26 ; Align 208192 15 105 ; Align 208303 50 357 ; Align 208663 169 258 ; Align 208921 256 39 ; Align 210499 270 99 ; Align 210664 303 111 ; Align 211774 340 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 577 Query range: 19 -> 301 Target range: 274377 -> 275306 20 : ThrGluTyrSerIleGlnProIleArgTrpLeuLeuArgProIleSerValTrpProV : 39 !:!!!:||||||:!:||| !! !||||||!!!|||!:!||||||.!!!.!||||||: SerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProL 274378 : AGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGT : 274435 40 : alSerSerIleLys<-><-><->GluArgIleLeuSerAlaValLeuLeuIleValCy : 55 !!:!!||| !! ||||||||||||||| !:::|||:::...:::|| euAlaSerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCy 274436 : TAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttg : 274492 56 : sValPheLeuIleAlaGlyThrLeuValProCysAlaLeuAlaIlePheLeuAspGln : 74 | !! !!!!||| !..!|||:!!:!!||| !! !!!! !|||.!.||| ! sTyrCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeu---Val 274493 : ctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTA---GTA : 274546 75 : AsnLysAspValGluThrLysValArgAspPheGlyProLeuSerAsnTrpValLeuA : 94 :!!:!!..!:!!.!. !|||:!!!:! .!!|||||||||.!!:!!||| !!:!!! AspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleG 274547 : GATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCG : 274606 95 : laSerLeuLysTyrCysSerLeuLeuSerHisValGlyAspIleArgArgCysLeuGl : 113 .!.!!:!!!!.||| !!!!|||||| !!.! ! !!!:|||||| !!|||:!!|| lyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGl 274607 : GAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGA : 274663 114 : uHisValAspAlaAspTrpArgAlaValThrLysHisGluAspArgGluMetMetLeu : 132 ||||:!!.!..!!||||||||| !||||||!:!! ||||||!:!:!!:!!|||||| uHisMetGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeu 274664 : GCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTG : 274720 133 : ArgAsnAlaLysIleGlyArgPheIleAlaLeuPheAlaAlaLeuPheMetHisSerG : 152 !:!||||||||||||||||||!:!:!!|||:!!|||..!||| !||||||!!.!!!| LysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysG 274721 : AAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCG : 274780 153 : lyValPheSerTyrSerIlePheGlnAlaMetThrMetAsnGluSerValLeuGly<- : 171 |||||.!!!!!|||!!!:!:.!. !|||.!.||||||.!. ! !:!!||| lyValLeuCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAs 274781 : GTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAA : 274837 172 : >AspAsnAlaSerMetHisSerLeuProPheAlaPheTyrAspLysIleLeuAspThr : 189 !!:!.! !!!!:!!|||! !||||||! ! ! !||| ! ||||||:!!! ..! nGluThrArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaVal 274838 : CGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTG : 274894 190 : ThrThrSerProThrTyrGluIleValPheIleMetGlnPheLeuSerThrPheValV : 209 !|||||||||||| !!|||||||||.!! ! !||||||:!!||| !|||:!!| AspThrSerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleV 274895 : GACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCG : 274954 210 : alAsnSerValAlaValSerThrValSerLeuIleAlaValPheValMetHisAlaCy : 228 |||||||| !||||||.!!.!! !!|||||| !|||||||||!.! ||||||! alAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTy 274955 : TGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTA : 275011 229 : sGlyGlnIleLysIleLeuIleSerLeuLeuGluAsnPheValAspGluThrSerGlu : 247 !||||||:!:!..:!:|||!!:! !! !:!! .!.||||||:!!.!.:!!!!!!!: rGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAsp 275012 : CGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAt : 275068 248 : LysTrpGluAsnSerThrGlnGlyLysTyrAlaValIleValGluHisHisLeuArgV : 267 ::: :::||| ..!:!! !!.!|||:!!||||||||||||||||||| GlnAsnLysAsnValTyrPheSerGluIleGlyValValValGluHisHisLeuArgV 275069 : cagaataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGG : 275128 268 : alLeu{Se} >>>> Target Intron 1 >>>> {r}PheValSerTyrIleAs : 275 |||||{||} 74 bp {|}|||:!!:!! !|||!! alLeu{Se}++ ++{r}PheIleAlaArgIleGl 275129 : TACTC{AG}gt.........................ag{T}TTCATAGCACGTATCGA : 275226 276 : pLysIleThrAsnIleIleCysLeuValGluValMetGlyCysThrLeuHisMetCys : 294 : ! :!:! !||| !||||||!!!:!!|||:!!.!. !||||||||| !!|||||| uAspValMetAsnArgIleCysPheMetGluLeuPheLysCysThrLeuAspMetCys 275227 : GGATGTGATGAATCGAATATGCTTCATGGAATTGTTCAAGTGTACTCTGGATATGTGC : 275283 295 : LeuLeuGlyTyrTyrCysIle : 301 :!!|||||||||||| !:!! MetLeuGlyTyrTyrIleLeu 275284 : ATGCTTGGCTATTACATTCTC : 275306 vulgar: CbirOr26 19 301 . KQ414889.1 274377 275306 + 577 M 24 72 G 0 9 M 29 87 G 1 0 M 97 291 G 0 3 M 98 294 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274378 275306 577 + . gene_id 9 ; sequence CbirOr26 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274378 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274378 275135 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274378 275306 577 + . alignment_id 9 ; Query CbirOr26 ; Align 274378 20 72 ; Align 274459 44 87 ; Align 274546 74 291 ; Align 274840 171 294 ; Align 275211 270 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 536 Query range: 19 -> 268 Target range: 266631 -> 267387 20 : ThrGluTyrSerIleGlnProIleArgTrpLeuLeuArgProIleSerValTrpPro< : 39 !:!!!:||||||:!:||| !! !||||||!!!|||!:!||||||.!!!.!|||||| SerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProP 266632 : AGCGATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGC : 266689 40 : -><-><->ValSerSerIleLysGluArgIleLeuSerAlaValLeuLeuIleValCy : 55 :!!!!!|||! ! |||||||||:!!||| !!.!|||:!!:!!:!!|| roLeuSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCy 266690 : CGTTGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTG : 266746 56 : sValPheLeuIleAlaGlyThrLeuValProCysAlaLeuAlaIlePheLeuAspGln : 74 | !! !! !||| ! !|||:!!:!!|||||| !!!! !:!! !!||| :!! sTyrCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeu---Glu 266747 : CTACTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTG---GAG : 266800 75 : AsnLysAspValGluThrLysValArgAspPheGlyProLeuSerAsnTrpValLeuA : 94 :!!:!!..!:!!...|||||||||!:!! |||||||||||||||:!!||| !!:!!! AspGluSerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValG 266801 : GACGAGAGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCG : 266860 95 : laSerLeuLysTyrCysSerLeuLeuSerHisValGlyAspIleArgArgCysLeuGl : 113 .!.!!:!!!!.||| !!!!|||||| !!.! ! !!!:|||||| !!|||:!!|| lyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGl 266861 : GAGGAATTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGA : 266917 114 : uHisValAspAlaAspTrpArgAlaValThrLysHisGluAspArgGluMetMetLeu : 132 ||||:!!.!..!!||||||||| !||||||!:!! ||||||!:!:!!:!!|||||| uHisMetGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeu 266918 : GCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTG : 266974 133 : ArgAsnAlaLysIleGlyArgPheIleAlaLeuPheAlaAlaLeuPheMetHisSerG : 152 !:!||||||!:!|||||||||!:!||||||:!!|||..!||| !||||||!!.!!!| LysAsnAlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysG 266975 : AAGAACGCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCG : 267034 153 : lyValPheSerTyrSerIlePheGlnAlaMetThrMetAsnGluSerValLeuGlyAs : 171 |||||.!!.!!|||!!!:!:.!. !|||.!.||||||.!. !! !:!!|||:! lyValLeuGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAs 267035 : GTGTTCTCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAA : 267091 172 : pAsnAlaSer<->MetHisSerLeuProPheAlaPheTyrAspLysIleLeuAspThr : 189 !.!..!!!!! :!:||| !||||||! !||| !!||| ! |||!!::!!! ..! nGluThrArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaVal 267092 : CGAGACTAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTT : 267148 190 : ThrThrSerProThrTyrGluIleValPheIleMetGlnPheLeuSerThrPheValV : 209 !|||||||||||| !!|||||||||.!!:!! ||||||:!!||| !|||:!!| AspThrSerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleV 267149 : GATACCAGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCG : 267208 210 : alAsnSerValAlaValSerThrValSerLeuIleAlaValPheValMetHisAlaCy : 228 |||||||| !!.!|||.!!.!! !!|||||| !|||||||||!.! |||||||| alAsnSerSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCy 267209 : TGAATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTG : 267265 229 : sGlyGlnIleLysIleLeuIleSerLeuLeuGluAsnPheValAspGluThrSerGlu : 247 |||||||:!:!..:!:|||!!:! !! !:!!:!!.!.||||||:!!..!:!!!!!!!: sGlyGlnLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAsp 267266 : CGGACAGCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGAT : 267322 248 : LysTrpGluAsnSerThrGlnGlyLysTyrAlaValIleValGluHisHisLeuArgV : 267 !.. :!!||| ! ! ! !||| !!.!|||:!!||||||||||||||||||| SerAsnLysAsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgV 267323 : AGCAATAAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAG : 267382 268 : alLeu : 268 ||||| alLeu 267383 : TTTTG : 267387 vulgar: CbirOr26 19 268 . KQ414889.1 266631 267387 + 536 M 19 57 G 0 9 M 34 102 G 1 0 M 101 303 G 0 3 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266632 267387 536 + . gene_id 10 ; sequence CbirOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266632 267387 . + . KQ414889.1 exonerate:protein2genome:local exon 266632 267387 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 266632 267387 536 + . alignment_id 10 ; Query CbirOr26 ; Align 266632 20 57 ; Align 266698 39 102 ; Align 266800 74 303 ; Align 267106 175 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 438 Query range: 14 -> 268 Target range: 262828 -> 263599 15 : SerTyrAlaAspAspThrGluTyrSerIleGlnProIleArgTrpLeuLeuArgProI : 34 |||!:!!.!..! !!:!!!:||||||:!:||| !! !||||||||||||!:!|||| SerPheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProI 262829 : AGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGA : 262886 35 : leSerValTrpProValSer<-><-><->SerIleLysGluArgIleLeuSerAlaVa : 50 ||.!!!.!||||||:!!||| |||! !! !|||||||||:!!!!! !:! leGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPheLe 262887 : TCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCT : 262943 51 : lLeuLeuIleValCysValPheLeuIleAlaGlyThrLeuValProCysAlaLeuAla : 69 !|||:!!:!!|||||| !! !|||||| !..!|||:!!:!!|||! ! !||| ! uLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeuHis 262944 : CTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCAT : 263000 70 : IlePheLeuAspGlnAsnLysAspValGluThrLysValArgAspPheGlyProLeuS : 89 ||| !!|||!!: :!!:!! !!.!.! !|||:!!!:!! !.!!|||||||||. IleValLeuGluAla---GluAsnPheHisMetLysLeuGlnValLeuGlyProLeuG 263001 : ATCGTCCTAGAAGCC---GAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCG : 263057 90 : erAsnTrpValLeuAlaSerLeuLysTyrCysSerLeuLeuSerHisValGlyAspIl : 108 !!.!.||| !!:!!!.!! !:!!!!.||| !!!!|||||| !||| ! !||||| lyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIl 263058 : GTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATAT : 263114 109 : eArgArgCysLeuGluHisValAspAlaAspTrpArgAlaValThrLysHisGluAsp : 127 |!:! !!|||:!!:!!||||||.!.! !|||||| !! !||||||!:! |||||| eGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAsp 263115 : ACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGAT : 263171 128 : ArgGluMetMetLeuArgAsnAlaLysIleGlyArgPheIleAlaLeuPheAlaAlaL : 147 !:!...!!:||||||!:!||||||||| !||||||!:!:!:||| !! !..!|||: GlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaI 263172 : CAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGA : 263231 148 : euPheMetHisSerGlyValPheSerTyrSerIlePheGlnAlaMetThrMetAsnGl : 166 !!||||||!!.!!!.!!:!!.!.!!! ! !!!:!! !! !|||.!.|||! .!.! lePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnVa 263232 : TCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGT : 263288 167 : uSerValLeuGlyAspAsnAlaSer<->MetHisSerLeuProPheAlaPheTyrAsp : 184 !! !! ! !|||:!!.!..!!!!! :!:!.!! !||||||! ! !! ! ||| ! lIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLys 263289 : GATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAA : 263345 185 : LysIleLeuAspThrThrThrSerProThrTyrGluIleValPheIleMetGlnPheL : 204 :!!|||:!! ..! !|||!:!|||||| !!|||||| !!.!! !! !||||||| GluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheL 263346 : GAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTC : 263405 205 : euSerThrPheValValAsnSerValAlaValSerThrValSerLeuIleAlaValPh : 223 ||||| !|||:!!|||!.!:!!..!.!!|||.!!.!! !!.!!:!!! !|||||||| euSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPh 263406 : TGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTT : 263462 224 : eValMetHisAlaCysGlyGlnIleLysIleLeuIleSerLeuLeuGluAsnPheVal : 242 |!.! |||||||||||||||:!:!!.:!:|||!!:|||! !:!! !.!.|||||| eAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheVal 263463 : CGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTG : 263519 243 : AspGluThrSerGluLysTrpGluAsnSerThrGlnGlyLysTyrAlaValIleValG : 262 :!!:!!:!!!!!!!::!! :!!||| ! ! !:!! !.!|||||||||| AsnGlnSerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValG 263520 : AACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTG : 263579 263 : luHisHisLeuArgValLeu : 268 |||||||||||||||||||| luHisHisLeuArgValLeu 263580 : AACATCATCTGAGAGTTCTG : 263599 vulgar: CbirOr26 14 268 . KQ414889.1 262828 263599 + 438 M 26 78 G 0 9 M 34 102 G 1 0 M 99 297 G 0 3 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262829 263599 438 + . gene_id 11 ; sequence CbirOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262829 263599 . + . KQ414889.1 exonerate:protein2genome:local exon 262829 263599 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 262829 263599 438 + . alignment_id 11 ; Query CbirOr26 ; Align 262829 15 78 ; Align 262916 41 102 ; Align 263018 76 297 ; Align 263318 175 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 413 Query range: 5 -> 277 Target range: 236804 -> 237623 6 : GlnAspHisLeuIleThrProTyrPheSerTyrAlaAspAspThrGluTyrSerIleG : 25 .!.||| ! !:!:..! !! ! .!!!:! .!!! !..!!:!!!:||||||:!!| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuG 236805 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCC : 236862 26 : lnProIleArgTrpLeuLeuArgProIleSerValTrpPro<->ValSerSerIleLy : 43 || !! !|||||| !:!!!:! !|||.!!..!|||||| !!||||||! ! lnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerAsnLe 236863 : AGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGAACCT : 236919 44 : sGluArgIleLeuSerAlaValLeuLeuIleValCysValPheLeuIleAlaGlyThr : 62 ||||||! !:!!||| !:!!||| !:!::!!||| ! ! !||| ! !:!! uGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSer 236920 : CGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCG : 236976 63 : LeuValProCysAlaLeuAlaIlePheLeuAspGlnAsnLysAspValGluThrLysV : 82 :!!:!!||||||:!!||| !:!!.!.|||!!::!!... ! !! ! ||||||| IleIleProCysSerLeuHisLeuMetLeuGluLysGly---ThrPheTyrThrLysV 236977 : ATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGG---ACTTTCTACACGAAAG : 237033 83 : alArgAspPheGlyProLeuSerAsnTrpValLeuAlaSerLeuLysTyrCysSerLe : 101 ||!:! .!!||| !!||||||:!!||||||!!!..!! !:!!!..||| !! !|| alLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLe 237034 : TGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCT : 237090 102 : uLeuSerHisValGlyAspIleArgArgCysLeuGluHisValAspAlaAspTrpArg : 120 |||| !!.. ! ! !||||||!.!! !!!!.!.|||:!!!!:.!!||||||||| uLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArg 237091 : GTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGA : 237147 121 : AlaValThrLysHisGluAspArgGluMetMetLeuArgAsnAlaLysIleGlyArgP : 140 .!!..!|||::: ||| :::|||:::||||||!:! !!||||||.!!.!!|||! ThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgT 237148 : ACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGAT : 237207 141 : heIleAlaLeuPheAlaAlaLeuPheMetHisSerGlyValPheSerTyrSerIlePh : 159 :! |||:!!! !..!.!!:!!|||!!:|||.!!|||:!!.!!.!!|||!!!:!!.! yrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMe 237208 : ACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTAT : 237264 160 : eGlnAlaMetThrMetAsnGluSerValLeuGlyAspAsnAlaSer<->MetHisSer : 177 . !||| |||! !! ! !|||:!!|||:!!!!..!!!!! :!!!.! ! tThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLeuArgVal 237265 : GACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGCGTG : 237321 178 : LeuProPheAlaPheTyrAspLysIleLeuAspThrThrThrSerProThrTyrGluI : 197 ||||||!!. !!.!.||| ! !:!!||| ..! !|||!:! !!! ! !!!!:| LeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnAspI 237322 : CTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGACA : 237381 198 : leValPheIleMetGlnPheLeuSerThrPheValValAsnSerValAlaValSerTh : 216 ||||| !!:!: |||||||||||| !|||:!!!.!|||!:! !|||:!!|||.. leValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSerVa 237382 : TCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAGTGT : 237438 217 : rValSerLeuIleAlaValPheValMetHisAlaCysGlyGlnIleLysIleLeuIle : 235 !:!!||||||! !::!!.!.!...! ||||||! !||||||:!:!..:!::!!!!: lIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValValMet 237439 : TATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTTATG : 237495 236 : SerLeuLeuGluAsnPheValAspGluThrSerGluLysTrpGluAsnSerThrGlnG : 255 ! !! !:!!|||:!!||||||..!|||.!!!!!...!:! !!:!!:!!..! ! ! LeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLysAspAspHisPheA 237496 : TTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAGGACGATCATTTCG : 237555 256 : lyLysTyrAlaValIleValGluHisHisLeuArgValLeuSerPheValSerTyrIl : 274 !:!! !!..!|||||||||.!.|||||||||||||||!.!! |||!!!! :! spGluIleProThrIleValGluGluHisLeuArgValLeuLys***ValCysLeuLe 237556 : ACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAGTAAGTATGTTTGTT : 237612 275 : eAspLysIle : 277 :||| !||| uAspLeuIle 237613 : GGATTTGATT : 237623 vulgar: CbirOr26 5 277 . KQ414889.1 236804 237623 + 413 M 33 99 G 0 3 M 37 111 G 1 0 M 98 294 G 0 3 M 103 309 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236805 237623 413 + . gene_id 12 ; sequence CbirOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236805 237623 . + . KQ414889.1 exonerate:protein2genome:local exon 236805 237623 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 236805 237623 413 + . alignment_id 12 ; Query CbirOr26 ; Align 236805 6 99 ; Align 236907 39 111 ; Align 237018 77 294 ; Align 237315 175 309 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 390 Query range: 13 -> 276 Target range: 221354 -> 222149 14 : PheSerTyrAlaAspAspThrGluTyrSerIleGlnProIleArgTrpLeuLeuArgP : 33 !:!..!||| ! :!!..!:!!! |||:!:||| !! !||||||:!!|||!:!| TyrAspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysP 221355 : TACGATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGC : 221412 34 : roIleSerValTrpProValSer<-><-><->SerIleLysGluArgIleLeuSerAl : 49 |||||.!!||||||||| !||| |||! !|||||| !|||! ! roIleGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTr 221413 : CGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTG : 221469 50 : aValLeuLeuIleValCysValPheLeuIleAlaGlyThrLeuValProCysAlaLeu : 68 !:!!:!! !:!!|||||| ! !||||||.!! ! !||||||||||||::!||| pLeuIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeu 221470 : GCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTT : 221526 69 : AlaIlePheLeuAspGlnAsnLysAspValGluThrLysValArgAspPheGlyProL : 88 !:!:.!!|||!!: ! :!!|||||| ! !.!!:!:!!!:! !!.||||||| TyrValIleLeuGluVal---GluAspValTyrAsnArgIleLysLeuLeuGlyProL 221527 : TACGTGATCCTCGAAGTA---GAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGT : 221583 89 : euSerAsnTrpValLeuAlaSerLeuLysTyrCysSerLeuLeuSerHisValGlyAs : 107 ||||| !!! |||:!!|||! !||||||||| ! !|||:!! !:!!! !..!|| euSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAs 221584 : TGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGA : 221640 108 : pIleArgArgCysLeuGluHisValAspAlaAspTrpArgAlaValThrLysHisGlu : 126 |||||||..!|||:!!|||!.!:!!!!: !||||||!:! !:!!||| ! !:!! pIleArgGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLys 221641 : CATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAG : 221697 127 : AspArgGluMetMetLeuArgAsnAlaLysIleGlyArgPheIleAlaLeuPheAlaA : 146 |||!:!!!:!!:|||:!!..!||||||! .!!|||||| :!: !:!!.!!..!. AspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysT 221698 : GATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCA : 221757 147 : laLeuPheMetHisSerGlyValPheSerTyrSerIlePheGlnAlaMetThrMetAs : 165 !!!!!||||||:!!|||||| ||| ||| ! ! !!.!.!:!:!!.. hrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGl 221758 : CATTTTTCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGG : 221814 166 : nGluSerValLeuGlyAsp<->AsnAlaSerMetHisSerLeuProPheAlaPheTyr : 183 !:!!! ! ! ! !||| |||...:::... !!:!! !||| !!|||! yLysIleProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSer 221815 : TAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCG : 221871 184 : AspLysIleLeuAspThrThrThrSerProThrTyrGluIleValPheIleMetGlnP : 203 |||:!!|||||| ! !||||||..! !!||||||:!!||| :!:|||. ArgPheIleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnI 221872 : AGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAA : 221931 204 : heLeuSerThrPheValValAsnSerValAlaValSerThrValSerLeuIleAlaVa : 222 !!:!!:!! ! !:!!:!!:!!|||:!!.!! !:!!.!! !||||||:!!|||:! leMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMe 221932 : TTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTAT : 221988 223 : lPheValMetHisAlaCysGlyGlnIleLysIleLeuIleSerLeuLeuGluAsnPhe : 241 !|||!.!:!!|||||||||||||||!!::!!:!:|||!!:|||! !|||:!!:!!!!. tPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeu 221989 : GTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTG : 222045 242 : ValAspGluThrSerGluLysTrpGluAsnSerThrGlnGlyLysTyrAlaValIleV : 261 :!!:!!! !:!!!!:! !!! |||!:!..!.!. !!!:! ||| !|||| IleAsnGlyArgAlaAspMetCys---AsnAsnValAspArgArgIleAlaLysIleV 222046 : ATCAACGGCCGGGCGGATATGTGT---AACAACGTGGATAGGAGAATAGCGAAGATTG : 222102 262 : alGluHisHisLeuArgValLeuSerPheValSerTyrIleAspLys : 276 ||.!.!!.|||:!!|||:!!|||..!!:!||| !!! !|||! !::: alAsnGlnHisValArgIleLeuGlnTyrValArgCysIleGlyArg 222103 : TGAATCAACACGTTCGAATATTGCAGTATGTACGTTGTATCGGCCGt : 222149 vulgar: CbirOr26 13 276 . KQ414889.1 221354 222149 + 390 M 27 81 G 0 9 M 34 102 G 1 0 M 96 288 G 0 3 M 78 234 G 1 0 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221355 222149 390 + . gene_id 13 ; sequence CbirOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221355 222149 . + . KQ414889.1 exonerate:protein2genome:local exon 221355 222149 . + . insertions 12 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 221355 222149 390 + . alignment_id 13 ; Query CbirOr26 ; Align 221355 14 81 ; Align 221445 41 102 ; Align 221547 76 288 ; Align 221838 172 234 ; Align 222072 251 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 346 Query range: 147 -> 392 Target range: 300117 -> 302036 148 : PheMetHisSerGlyValPheSerTyrSerIlePheGlnAlaMetThrMetAsnGluS : 167 |||:!: !.!! ! ! !||| ! ! !:!:! ::!! !! !:!! !||| ! ! PheLeuSerLysAspArgSerSerGluPheLeuSerArgGluLysSerLysAsnTyrT 300118 : TTCTTATCGAAGGACAGAAGCAGCGAGTTCCTGTCGAGGGAGAAAAGCAAGAATTACA : 300175 168 : erValLeuGlyAspAsnAlaSerMetHisSerLeuProPheAlaPheTyrAspLysIl : 186 !! ! ! !!!!:||| !!!! ! !!||| !!!:! !! !|||||| !.! hrTyrLysArgGluAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPh 300176 : CTTACAAAAGGGAGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTT : 300232 187 : eLeuAspThrThrThrSerProThrTyrGluIleValPheIleMetGlnPheLeuSer : 205 !:!!|||||| !|||||||||||||||||||||||||||......... .!!:!! eIleAspThrGlnThrSerProThrTyrGluIleValPhePhePheHisCysPheAla 300233 : TATCGATACACAAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCA : 300289 206 : ThrPheValValAsnSerValAlaValSerThrValSerLeuIleAlaValPheValM : 225 .!!.!.:!!:!! !!!:!|||.!!..!:!!.!! !|||||| |||:!!||||||! AlaMetIleMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValT 300290 : GCGATGATCATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCA : 300349 226 : etHisAlaCysGlyGlnIleLysIleLeuIleSerLeuLeuGluAsnPheValAspGl : 244 ||| !||||||||||||:!!|||! !!!::!! !||||||:!!.!.|||!!:.. hrHisIleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluAr 300350 : CTCATATCTGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAG : 300406 245 : uThrSerGluLysTrpGluAsnSerThrGlnGlyLysTyrAlaValIleValGluHis : 263 !|||.!!|||||| :!!..! !! ! ! ! !.!|||||||||..! !! gThrGlyGluLys------AspAspGlyProAspProLeuValValIleValArgAsp 300407 : GACGGGAGAGAAG------GACGACGGTCCTGATCCTTTGGTCGTTATCGTTCGAGAT : 300457 264 : HisLeuArgValLeu{Se} >>>> Target Intron 1 >>>> {r}PheValS : 272 |||:!!!:!||||||{!!} 1110 bp {!} ! !! HisValLysValLeu{Ar}++ ++{g}AspProC 300458 : CACGTGAAGGTTTTA{AG}gt.........................ag{A}GACCCGT : 301594 273 : erTyrIleAspLysIleThrAsnIleIleCysLeuValGluValMetGlyCysThrLe : 291 !!! !.!! ! !! !||| ! !:!!||| ||| ... ||||| ysSerPheArg***ProThrPheHisLeuCysAlaValIleLysPheGluSerThrLe 301595 : GTTCCTTCCGTTAGCCAACTTTTCATCTCTGCgctgtaattaaatttgaatctACTTT : 301651 292 : uHisMetCysLeuLeuGlyTyrTyrCysIleMetAspTrpThrGlnGlyAspLysGlu : 310 |:!! !!!||| !! !!! .!! !!!:||| !.!..!!|||! ! uAsnAlaLysPheLeuArgValIle***Phe***GluTrpGlnAsnSerAspThrIle 301652 : AAATGCAAAGTTTTTACGAGTAATTTGATTTTAGGAATGGCAAAATAGCGACACGATC : 301708 311 : SerIleValSerTyrValIleIleLeuIleSerValThrPheAsnIlePheIlePheC : 330 :!!!!::!!!!!!:! !!! !:!:|||! ||| !!|||||||||||||||||||||| AlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAsnIlePheIlePheC 301709 : GCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATATTCATATTCT : 301768 331 : ysTyrIleGlyGluIleLeuSerGluGln >>>> Target Intron 2 >>>> : 340 ||||||||||||||||||||||||||||| 80 bp ysTyrIleGlyGluIleLeuSerGluGln++ ++ 301769 : GCTACATCGGCGAGATTCTTTCCGAACAGgt.........................ag : 301876 341 : CysGlyGlnIleGlyAspThrAlaTyrMetThrAsnTrpTyrLeuLeuArgArgAsnA : 359 |||.!!|||||||||....!!:!!||| !! !:!!|||||| !|||! ! !!!.! CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysA 301877 : TGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGA : 301935 360 : snAlaValGlyPheValLeuIleIleLeuLysSerAsnValValValLysIleThrAl : 378 ..||| !! !.!!:!!|||:!!! !:!!! !|||.!. ! ! !|||:!!||||| rgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAl 301936 : GAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGC : 301992 379 : aGlyLysMetIleGluLeuSerLeuSerThrPheGlyAspVal : 392 |||||||!!:|||!!:|||||||||!:!||||||.!!..!||| aGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301993 : AGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: CbirOr26 147 392 . KQ414889.1 300117 302036 + 346 M 101 303 G 2 0 M 18 54 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 70 210 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300118 302036 346 + . gene_id 14 ; sequence CbirOr26 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300118 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300118 300476 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300118 302036 346 + . alignment_id 14 ; Query CbirOr26 ; Align 300118 148 303 ; Align 300421 251 54 ; Align 301588 270 210 ; Align 301878 340 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 302 Query range: 15 -> 268 Target range: 289717 -> 290479 16 : TyrAlaAspAspThrGluTyrSerIleGlnProIleArgTrpLeuLeuArgProIleS : 35 |||! ! |||! !...|||!!!.!!:!! ! !!.!|||:!!|||!:!||||||. TyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleLeuLysProIleG 289718 : TACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAG : 289775 36 : erValTrpProVal<-><-><-><->SerSerIleLysGluArgIleLeuSerAlaVa : 50 !!:!!!::||| !! :!!|||! !:::||||||! !|||!.!:! lyMetTyrProPheValPheSerArgAlaSerArgArgGluArgThrAlaSerValLe 289776 : GCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTT : 289832 51 : lLeuLeuIleValCysValPheLeuIleAlaGlyThrLeuValProCysAlaLeuAla : 69 !|||:!!:!:|||||| !! :!!:!! ! !! !:!!||||||! !::!! ! ! uLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValProPheSerHisHis 289833 : GCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCAC : 289889 70 : IlePheLeuAspGlnAsnLysAspValGluThrLysValArgAspPheGlyProLeuS : 89 :!!.!.!!!..!.!.||| |||:!!.!.||| |||!:!:!!.!!|||||||||! ValLeuPheSerAspAsn---AspMetAsnThrPheValLysAsnLeuGlyProLeuT 289890 : GTTCTATTCAGCGACAAC---GACATGAACACGTTCGTTAAGAATCTCGGACCGTTGA : 289946 90 : erAsnTrpValLeuAlaSerLeuLysTyrCysSerLeuLeuSerHisValGlyAspIl : 108 !! !!! :!! !.!!! !!!!|||||||||! !!!! !! ! ! ! !..!! || hrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGlySerAlaIl 289947 : CGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGAT : 290003 109 : eArgArgCysLeuGluHisValAspAlaAspTrpArgAlaValThrLysHisGluAsp : 127 | !!||||||:!!:!!|||:!!!!: !||||||!:! !:!! ! ! .!.!!: !! eGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAspGluAspHis 290004 : CGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCAT : 290060 128 : ArgGluMetMetLeuArgAsnAlaLysIleGlyArgPheIleAlaLeuPheAlaAlaL : 147 |||! !!:||||||||| !!!.!! !!!:.!!||| !:!! ! !.!...!|||: ArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysLeuCysAlaI 290061 : CGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGA : 290120 148 : euPheMetHisSerGlyValPheSerTyrSerIlePheGlnAlaMetThrMetAsnGl : 166 !!|||:!!:!!! !|||! !.!.||||||!:!! ! !! ! !!:!! ! !!!.:! lePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPheSerLysLy 290121 : TCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAA : 290177 167 : uSerValLeuGlyAspAsnAlaSerMetHisSerLeuProPheAlaPheTyrAspLys : 185 !|||||| !||| |||!.!!!!!!:... !!||| !!!:! !! !|||!!::!! sSerValAsnGly---AsnValThrIleArgProLeuThrTyrProGlyTyrGluGlu 290178 : GAGCGTGAACGGT---AACGTGACTATCAGACCTCTAACTTATCCCGGTTACGAGGAG : 290231 186 : IleLeuAspThrThrThrSerProThrTyrGluIleValPheIleMetGlnPheLeuS : 205 .!!!!!|||..! !! !||||||.!!||||||||||||||| !|||!!.! !:!!! PhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetHisCysValT 290232 : TTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCT : 290291 206 : erThrPheValValAsnSerValAlaValSerThrValSerLeuIleAlaValPheVa : 224 !..!.!.:!!..! !:!:!!.!!:!!:!!.!! !||||||! .!!:!!|||!. yrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePheAl 290292 : ACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGC : 290348 225 : lMetHisAlaCysGlyGlnIleLysIleLeuIleSerLeuLeuGluAsnPheValAsp : 243 !! |||.!!||||||||||||||||||! !! !!!! !||||||:!! :!! aThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAsp---LeuThr 290349 : CACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGAT---CTGACA : 290402 244 : GluThrSerGluLysTrpGluAsnSerThrGlnGlyLysTyrAlaValIleValGluH : 263 :!!! !.!! ! !! !|||!!..!!..!...! !:::! ||||||:!!|||... LysArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValValValSerG 290403 : AAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTGTGAGCG : 290462 264 : isHisLeuArgValLeu : 268 !|||:!!..!:!!||| lyHisValGluIleLeu 290463 : GTCACGTGGAGATCTTG : 290479 vulgar: CbirOr26 15 268 . KQ414889.1 289717 290479 + 302 M 24 72 G 0 12 M 36 108 G 1 0 M 94 282 G 1 0 M 69 207 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289718 290479 302 + . gene_id 15 ; sequence CbirOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289718 290479 . + . KQ414889.1 exonerate:protein2genome:local exon 289718 290479 . + . insertions 12 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 289718 290479 302 + . alignment_id 15 ; Query CbirOr26 ; Align 289718 16 72 ; Align 289802 40 108 ; Align 289910 77 282 ; Align 290192 172 207 ; Align 290399 242 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 298 Query range: 14 -> 274 Target range: 226909 -> 227695 15 : SerTyrAlaAspAspThrGluTyrSerIleGlnProIleArgTrpLeuLeuArgProI : 34 ..!||| !!!: !! !.!. ||||||||| !! !||||||||||||!:!|||: AspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProL 226910 : GACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCAC : 226967 35 : leSerValTrpProValSerSerIleLysGluArgIle<-><-><->LeuSerAlaVa : 50 !!.!!:!!|||||| !||| !!! !!.....|||||| !!!||| !:! euGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLe 226968 : TCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTT : 227024 51 : lLeuLeuIleValCysValPheLeuIleAlaGlyThrLeuValProCysAlaLeuAla : 69 !:!! !.!!:!!||| ! |||!!:::! ! !|||||| !! !!!.!||| ! uMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyr 227025 : GATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTAC : 227081 70 : IlePheLeuAspGlnAsnLysAspValGluThrLysValArgAspPheGlyProLeuS : 89 :!: !!|||!!: ! |||! !!.! ! !.!! !:!!!:! .!!||||||:!!| ValValLeuGluVal---LysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetS 227082 : GTGGTTCTAGAGGTG---AAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGT : 227138 90 : erAsnTrpValLeuAlaSerLeuLysTyrCysSerLeuLeuSerHisValGlyAspIl : 108 || !!::!.!:!!:!! !|||||||||! !! !||| !! !|||! !! !||||| erPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIl 227139 : CCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACAT : 227195 109 : eArgArgCysLeuGluHisValAspAlaAspTrpArgAlaValThrLysHisGluAsp : 127 |! !..!|||:!!|||!..:!! ! !||||||!:! !:!!! ! ! ! |||||| eLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAsp 227196 : TCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGAC : 227252 128 : ArgGluMetMetLeuArgAsnAlaLysIleGlyArgPheIleAlaLeuPheAlaAlaL : 147 |||.!.:!!|||:!!! ! !!||| ! !|||||| :!: ! !.!!..!.!!! ArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrP 227253 : AGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGT : 227312 148 : euPheMetHisSerGly<->ValPheSerTyrSerIlePheGlnAlaMetThrMetAs : 165 !!|||:!: !|||... |||||| |||! !:!! ! ! !! .!! !: hePheValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySe 227313 : TTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAG : 227369 166 : nGluSerValLeuGlyAspAsnAlaSerMetHisSerLeuProPheAlaPheTyrAsp : 184 !! :!!..! !! !! ||| !||| !..!:!!|||||| !!||| ! rValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLys 227370 : TGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAA : 227426 185 : LysIleLeuAspThrThrThrSerProThrTyrGluIleValPheIleMetGlnPheL : 204 ! ||| !|||..! ! !|||||| ! !!|||||| !!||| :!:||||||: IleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheV 227427 : ATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTG : 227486 205 : euSerThrPheValValAsnSerValAlaValSerThrValSerLeuIleAlaValPh : 223 !!!!! !.!!|||:!!:!!.!!|||.!! !:!!.!! !|||:!! !|||:!!.! alThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLe 227487 : TAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCT : 227543 224 : eValMetHisAlaCysGlyGlnIleLysIleLeuIleSerLeuLeuGluAsnPheVal : 242 !!.!:!:|||||||||||||||!!::!!:!:|||:!:|||! !|||! !:!!!!.:!! uAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIle 227544 : TGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATC : 227600 243 : AspGluThrSerGluLysTrpGluAsnSerThrGlnGlyLysTyrAlaValIleValG : 262 |||! ! !:!!!!: !...!!.!!! !.!.! !!:! !||| !|||||| AspGlyArgAlaAsp---MetSerLysThrLeuAspAspArgIleAlaSerIleValT 227601 : GACGGCAGAGCGGAT---ATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCA : 227657 263 : luHisHisLeuArgValLeuSerPheValSerTyrIle : 274 ||||||:!!|||:!!|||!.!! !|||!!!! !||| hrHisHisValArgIleLeuLysCysValThrCysIle 227658 : CTCACCACGTTCGAATATTGAAGTGTGTAACGTGTATC : 227695 vulgar: CbirOr26 14 274 . KQ414889.1 226909 227695 + 298 M 32 96 G 0 9 M 28 84 G 1 0 M 77 231 G 0 3 M 95 285 G 1 0 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226910 227695 298 + . gene_id 16 ; sequence CbirOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226910 227695 . + . KQ414889.1 exonerate:protein2genome:local exon 226910 227695 . + . insertions 12 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 226910 227695 298 + . alignment_id 16 ; Query CbirOr26 ; Align 226910 15 96 ; Align 227015 47 84 ; Align 227099 76 231 ; Align 227333 153 285 ; Align 227618 249 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 263 Query range: 17 -> 267 Target range: 204224 -> 204974 18 : AspAspThrGluTyrSerIleGlnProIleArgTrpLeuLeuArgProIleSerValT : 37 !!:||| !..!|||:!!! !!:: !:!:!:! !:!!||| !! !:!!.!!!.!| GluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaT 204225 : GAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGT : 204282 38 : rpProVal<-><-><->SerSerIleLysGluArgIleLeuSerAlaValLeuLeuIl : 53 |||||:!! |||||| !|||:!!:!! !! !:!! !! !:! rpProIleProValAsnSerSerProPheThrArgLeuValArgArgIleGluHisVa 204283 : GGCCGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGT : 204339 54 : eValCysValPheLeuIleAlaGlyThrLeuValProCysAlaLeuAlaIlePheLeu : 72 !||| ! ||||||... !:!!|||||| !! !||| !:!:|||||| lValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheLeu 204340 : AGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTG : 204396 73 : AspGlnAsnLysAspValGluThrLysValArgAspPheGlyProLeuSerAsnTrpV : 92 :!!.!.|||:!!! !:!!! !::::!!!:! !.!!||||||:!! !|||!! ---LysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysS 204397 : ---AAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCA : 204453 93 : alLeuAlaSerLeuLysTyrCysSerLeuLeuSerHisValGlyAspIleArgArgCy : 111 !:!! !! !!!!||||||! ! !:!!|||! !!..:!!! ! ! |||!:!!:! ! erIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSe 204454 : GCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAG : 204510 112 : sLeuGluHisValAspAlaAspTrpArgAlaValThrLysHisGluAspArgGluMet : 130 !|||.!. !:!! !||||||! !! !!.!||| !!|||:!!||| !!!: rLeuAsnThrIleArgArgAspTrpIleGluAlaThr---AspGluAsnArgLeuIle 204511 : TTTGAACACCATCAGACGCGACTGGATAGAGGCTACG---GATGAAAATCGGTTGATT : 204564 131 : MetLeuArgAsnAlaLysIleGlyArgPheIleAlaLeuPheAlaAlaLeuPheMetH : 150 .!.! ! !!!.||||||||||||||| :!: !|||.!!|||||| ! !|||: PheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetT 204565 : TTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGT : 204624 151 : isSerGlyValPheSerTyrSerIlePheGlnAlaMetThrMetAsnGluSerValLe : 169 !!.!!|||! !!!.!!!|||!!!! .!!! !!:!! !! ... !! !||| yrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleValTh 204625 : ACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTAAC : 204681 170 : uGlyAspAsnAlaSerMetHisSerLeuProPheAlaPheTyrAspLysIleLeuAsp : 188 ! !||||||!.!!!!!!:... !!||||||! ! !! !!||| ......::: rProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePheAsn 204682 : ACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaac : 204738 189 : ThrThrThrSerProThrTyrGluIleValPheIleMetGlnPheLeuSerThrPheV : 208 ! ! !||||||!.!||||||||||||||||||:!!|||.!!:!!:!! !|||| GluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheV 204739 : GAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTG : 204798 209 : alValAsnSerValAlaValSerThrValSerLeuIleAlaValPheValMetHisAl : 227 ||..! !!:!!||| ! !.!!||| !.!!:!! !|||:!!||||||:!:||||| alThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAl 204799 : TTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGC : 204855 228 : aCysGlyGlnIleLysIleLeuIleSerLeuLeuGluAsnPheValAspGluThrSer : 246 ||||.!!..!:!:!:!||||||:!:!:! !:!!.!. .!!||||||:!! :!! aCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLys---Ala 204856 : GTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAG---GCG : 204909 247 : GluLysTrpGluAsnSerThrGlnGlyLysTyrAlaValIleValGluHisHisLeuA : 266 !!:! ! |||!.. !..!!!. !!||| !|||! !|||||||||:!!!!. !! AspMetThrGluThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrL 204910 : GACATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGA : 204969 267 : rgVal : 267 :!:!! ysIle 204970 : AGATA : 204974 vulgar: CbirOr26 17 267 . KQ414889.1 204224 204974 + 263 M 22 66 G 0 9 M 33 99 G 1 0 M 50 150 G 1 0 M 120 360 G 1 0 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204225 204974 263 + . gene_id 17 ; sequence CbirOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204225 204974 . + . KQ414889.1 exonerate:protein2genome:local exon 204225 204974 . + . insertions 9 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 204225 204974 263 + . alignment_id 17 ; Query CbirOr26 ; Align 204225 18 66 ; Align 204300 40 99 ; Align 204399 74 150 ; Align 204549 125 360 ; Align 204909 246 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 252 Query range: 302 -> 392 Target range: 272836 -> 273176 303 : AspTrpThrGlnGlyAspLysGluSerIleValSerTyrValIleIleLeuIleSerV : 322 :!:||||||.!. !||| :!!|||:!!..!!!!||| !!!!:||||||||||||: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 323 : alThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln >>> : 340 !:|||||||||||||||||| |||||||||||||||||||||!!!|||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 341 : > Target Intron 1 >>>> CysGlyGlnIleGlyAspThrAlaTyrMetThrA : 351 70 bp ||| :::||||||!!:..!!.!|||||||||| ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 352 : snTrpTyrLeuLeuArgArgAsnAsnAlaValGlyPheValLeuIleIleLeuLysSe : 370 ||||||||! !|||! ! !!!!.:!! !:!!! !.!.:!!|||||||||! !!:!!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 371 : rAsnValValValLysIleThrAlaGlyLysMetIleGluLeuSerLeuSerThrPhe : 389 !!:!||||||:!!|||||||||||||||!:!!!::!! :!!|||:!!! !|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 390 : GlyAspVal : 392 ||||||||| GlyAspVal 273166 : GGCGATGTA : 273176 vulgar: CbirOr26 302 392 . KQ414889.1 272836 273176 + 252 M 37 111 5 0 2 I 0 66 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273176 252 + . gene_id 18 ; sequence CbirOr26 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273176 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273176 252 + . alignment_id 18 ; Query CbirOr26 ; Align 272837 303 111 ; Align 273018 340 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 237 Query range: 14 -> 239 Target range: 194150 -> 194825 15 : SerTyrAlaAspAspThrGluTyrSerIleGlnProIleArgTrpLeuLeuArgProI : 34 !:!||| ! ||||||||||||:!!:!!!:! ! !!:! !||||||! !|||| AsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProI 194151 : AATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGA : 194208 35 : leSerValTrpPro<->ValSerSerIleLysGluArgIleLeuSerAlaValLeuLe : 52 ||.!!:!!|||||| ! !..!|||:!!:::!!:|||:!!! ! ! !!.!! ! leGlyIleTrpProArgGluAspSerLeuArgAspArgValArgLeuPheAlaGlnTh 194209 : TCGGTATCTGGCCAAGGGAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAAC : 194265 53 : uIleValCysValPheLeuIleAlaGlyThrLeuValProCysAlaLeuAlaIlePhe : 71 ! !||| ! !! !|||!!:..! ! !||||||||| !!.!:!! !! !!:! rGlyValValPheAlaLeuMetCysPheLeuLeuValProHisValIleTyrThrTyr 194266 : TGGCGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTAC : 194322 72 : LeuAspGlnAsnLysAspValGluThrLysValArgAspPheGlyProLeuSerAsnT : 91 !!!||| !:!!|||:!! !! ! ! :!!!:!! .!!!.! !!! ! ! ! PheAsp---CysGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheS 194323 : TTCGAC---TGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCA : 194379 92 : rpValLeuAlaSerLeuLysTyrCysSerLeuLeuSerHisValGlyAspIleArgAr : 110 ! :!!||||||! !:!!|||!:!!! !!!:!!:!! !:!! ! !!!:|||||| erLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnArgLysGluIleArgPh 194380 : GTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATT : 194436 111 : gCysLeuGluHisValAspAlaAspTrpArgAlaValThrLysHisGluAspArgGlu : 129 !|||||| !.!.:!!!!:.!!.!.!::|||! !||| ! .!.|||||||||:!! eCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCysGluGluAspArgGln 194437 : CTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAG : 194493 130 : MetMetLeuArgAsnAlaLysIleGlyArgPheIleAlaLeuPheAlaAlaLeuPheM : 149 :!!||| !!.! !||||||||||||||||||.!!.!! !.!. ! ! !.!! ValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuS 194494 : GTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTT : 194553 150 : etHisSerGlyValPheSerTyrSerIlePheGlnAlaMetThrMetAsnGluSerVa : 168 :!!.!!|||!.!!!. !!||| !|||.!!! ! !!:!!! ! !.!...!! !|| erTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluArgIleVa 194554 : CTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGT : 194610 169 : lLeuGlyAspAsnAlaSerMetHisSerLeuProPheAlaPheTyrAspLysIleLeu : 187 | !! !||||||::!!!!..! !!||||||!:! ! ! !! !! .!!!!! lLysGluAspAsnSerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePhe 194611 : CAAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTC : 194667 188 : AspThrThrThrSerProThrTyrGluIleValPheIleMetGlnPheLeuSerThrP : 207 ! ! ! ! !||||||! !|||||||||..!|||:!! !|||.!.|||! !!:! AlaIleGluAspSerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerS 194668 : GCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCA : 194727 208 : heValValAsnSerValAlaValSerThrValSerLeuIleAlaValPheValMetHi : 226 !:!!:!! |||..! ! !.!!! ! !||||||:!!|||..!.!!:!!||||| erIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHi 194728 : GCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCA : 194784 227 : sAlaCysGlyGlnIleLysIleLeuIleSerLeuLeuGlu : 239 |..!|||||| !.!!:!!:!: !! !!!! !:!!||| sCysCysGlyLeuPheGluValThrSerArgArgMetGlu 194785 : TTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGATGGAG : 194825 vulgar: CbirOr26 14 239 . KQ414889.1 194150 194825 + 237 M 24 72 G 0 3 M 35 105 G 1 0 M 165 495 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194151 194825 237 + . gene_id 19 ; sequence CbirOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194151 194825 . + . KQ414889.1 exonerate:protein2genome:local exon 194151 194825 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 194151 194825 237 + . alignment_id 19 ; Query CbirOr26 ; Align 194151 15 72 ; Align 194226 39 105 ; Align 194331 75 495 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 229 Query range: 302 -> 401 Target range: 228247 -> 230433 303 : AspTrpThrGlnGlyAspLysGluSerIleValSerTyrValIleIleLeuIleSerV : 322 !!:|||!.!! ! !!!: ! !! ! !|||!!!||| ! :!!|||:!!||| GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerP 228248 : GAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCT : 228305 323 : alThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln >>> : 340 !!|||||||||||||||||||||||||||||||||||||||:!!:!!|||!!. heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluHis++ 228306 : TTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACgt... : 228361 341 : > Target Intron 1 >>>> CysGlyGlnIleGlyAspThrAlaTyrMetThrA : 351 1889 bp ||| !!:!!:!!|||!!:! !:!!||||||! !. ++CysArgLysValGlyGluLysSerTyrMetIleG 228362 : ......................agTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCG : 230281 352 : snTrpTyrLeuLeuArgArgAsnAsnAlaValGlyPheValLeuIleIleLeuLysSe : 370 !.||||||! !|||! ! !!|||!!. !:!! !!! !:!!||||||||| !! !|| luTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 230282 : AATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTC : 230338 371 : rAsnValValValLysIleThrAlaGlyLysMetIleGluLeuSerLeuSerThrPhe : 389 |||| ! !..!|||.!!|||||||||!!.|||:!!|||||||||:!!!:!|||||| rAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnThrPhe 230339 : CAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACACTTTC : 230395 390 : GlyAspValIleLysSerAlaValAlaTyrLeuAsn : 401 .!!||||||! !! ! ! ! !!.!||| !||| SerAspValSerIleIlePheSerValTyrThrAsn 230396 : AGCGACGTAAGTATCATATTCTCTGTTTACACGAAT : 230433 vulgar: CbirOr26 302 401 . KQ414889.1 228247 230433 + 229 M 37 111 5 0 2 I 0 1885 3 0 2 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228248 230433 229 + . gene_id 20 ; sequence CbirOr26 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228248 230433 229 + . alignment_id 20 ; Query CbirOr26 ; Align 228248 303 111 ; Align 230248 340 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 212 Query range: 17 -> 214 Target range: 294675 -> 295275 18 : AspAspThrGluTyrSerIleGlnProIleArgTrpLeuLeuArgProIleSerValT : 37 :!!|||..!! ! !!|||:!!:!! ! !||| !!||||||!:!||||||.!!:!!| AsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuT 294676 : AACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTT : 294733 38 : rpProVal<-><-><-><->SerSerIleLysGluArgIleLeuSerAlaValLeuLe : 52 |||||:!! !!!|||! ! !.!.!:!:!!|||||| !:!!|||:! rpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIl 294734 : GGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGAT : 294790 53 : uIleValCysValPheLeuIleAlaGlyThrLeuValProCysAlaLeuAlaIlePhe : 71 ! !|||..!!!. !:!! ! !..!||||||||||||!.!! ! .!!! ! eAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyr---PheCys 294791 : CGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATAC---TTCTGT : 294844 72 : LeuAspGlnAsnLysAspValGluThrLysValArgAspPheGlyProLeuSerAsnT : 91 :!! !!!. |||:::|||::: |||:!!!:! !.!.||||||:!! ! !!! ValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrS 294845 : GTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACT : 294904 92 : rpValLeuAlaSerLeuLysTyrCysSerLeuLeuSerHisValGlyAspIleArgAr : 110 :!!|||:!!! !|||!:!||| !!!!!|||:!!! ! ! ..! !! .!!!:!!. erMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHi 294905 : CTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCA : 294961 111 : gCysLeuGluHisValAspAlaAspTrpArgAlaValThrLysHisGluAspArgGlu : 129 !|||:!!||| !!:!!!!: !||||||!:! !:!! !!!.! ||| !!|||! ! sCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAla 294962 : TTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCG : 295018 130 : MetMetLeuArgAsnAlaLysIleGlyArgPheIleAlaLeuPheAlaAlaLeuPheM : 149 !!:|||:!!!:!||||||! !:!! !!:! !!:.!!:!! ! !.!!:!!.!.! IleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleI 295019 : ATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAA : 295078 150 : etHisSerGlyValPheSerTyrSerIlePheGlnAlaMetThrMetAsnGluSerVa : 168 !::!!|||..!!.! ! |||||| ! !.!! ... ||| ! !! leTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGl 295079 : TCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGA : 295135 169 : lLeuGlyAspAsnAlaSerMetHisSerLeuProPheAlaPheTyrAspLysIleLeu : 187 ! ! ! ! ||| !!!!!!:!.!:!!||||||.!! !! !|||!!: !.!!:!! uAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheVal 295136 : GAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTA : 295192 188 : AspThrThrThrSerProThrTyrGluIleValPheIleMetGlnPheLeuSerThrP : 207 |||.!! !:!!||||||||||||||||||:!! ! ! ! |||:!!! !:!!| AspAlaTyrSerSerProThrTyrGluIleIleArgThrHisLeuPheValTyrSerP 295193 : GACGCTTATTCCAGTCCTACCTACGAGATCATAAGAACTCATCTCTTTGTTTACTCGT : 295252 208 : heValValAsnSerValAlaVal : 214 || !!||||||!.!..!!.!||| hePheValAsnLysThrGlyVal 295253 : TCTTCGTCAACAAAACTGGTGTC : 295275 vulgar: CbirOr26 17 214 . KQ414889.1 294675 295275 + 212 M 22 66 G 0 12 M 29 87 G 1 0 M 145 435 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294676 295275 212 + . gene_id 21 ; sequence CbirOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294676 295275 . + . KQ414889.1 exonerate:protein2genome:local exon 294676 295275 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294676 295275 212 + . alignment_id 21 ; Query CbirOr26 ; Align 294676 18 66 ; Align 294754 40 87 ; Align 294841 70 435 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 199 Query range: 114 -> 268 Target range: 304413 -> 304866 115 : ValAspAlaAspTrpArgAlaValThrLysHisGluAspArgGluMetMetLeuArgA : 134 :!!..!.!!! !::..! !||| !...! !..!||||||||||||||||||!:! LeuSerThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysT 304414 : CTCTCTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAAT : 304471 135 : snAlaLysIleGlyArgPheIleAlaLeuPheAlaAlaLeuPheMetHisSerGlyVa : 153 !!!.!:!!!!:|||||| !:!:.!!:!!.!!..!|||:!!||||||:!!!!!|||! yrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGl 304472 : ACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGG : 304528 154 : lPheSerTyrSerIlePheGlnAlaMetThrMetAsnGluSerValLeuGlyAspAsn : 172 ! !! !||| !! !!..! !.!..!!! ... !! !||| !! ! !!||| yThrIleTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsn 304529 : CACCATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAAT : 304585 173 : AlaSerMetHisSerLeuProPheAlaPheTyrAspLysIleLeuAspThrThrThrS : 192 !!!!!!: ! !!||| !!:! !! !|||..! :!!!!!|||..! !|||| ArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrS 304586 : CGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAA : 304645 193 : erProThrTyrGluIleValPheIleMetGlnPheLeuSerThrPheValValAsnSe : 211 |||||! !||||||:!:|||!:!.!!:!:!!.! !:!!!!! !!:!|||:!! !!|| erProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSe 304646 : GCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTC : 304702 212 : rValAlaValSerThrValSerLeuIleAlaValPheValMetHisAlaCysGlyGln : 230 |:!!.!!!.!.!!.!! !.!!||| !|||:!!|||!.!! ||||||||||||||| rIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGln 304703 : TATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAA : 304759 231 : IleLysIleLeuIleSerLeuLeuGluAsnPheValAspGluThrSerGluLysTrpG : 250 ||| ! |||:!!!!:|||! !|||! :!!.!!||| !:!...||| . IleAspIleValMetSerArgLeuGlyAspLeuVal---------AsnSerLysGluS 304760 : ATTGATATCGTTATGTCTCGATTGGGTGATCTTGTC---------AACAGCAAAGAAT : 304810 251 : luAsnSerThrGlnGlyLysTyrAlaValIleValGluHisHisLeuArgValLeu : 268 .!::!..! !.!. !::!! !! !|||||||||||||||||||||:!!||| erSerAspLeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIleLeu 304811 : CATCTGATTTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTA : 304866 vulgar: CbirOr26 114 268 . KQ414889.1 304413 304866 + 199 M 128 384 G 3 0 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304414 304866 199 + . gene_id 22 ; sequence CbirOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304414 304866 . + . KQ414889.1 exonerate:protein2genome:local exon 304414 304866 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 304414 304866 199 + . alignment_id 22 ; Query CbirOr26 ; Align 304414 115 384 ; Align 304798 246 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 195 Query range: 294 -> 392 Target range: 305076 -> 305783 295 : LeuLeuGlyTyrTyrCysIleMetAspTrpThrGlnGlyAspLysGluSerIleValS : 314 !!!||| ||| ..!|||||| !....!!:!!! ! |||:!!..!! PheLeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrT 305077 : TTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAA : 305134 315 : erTyrValIleIleLeuIleSerValThrPheAsnIlePheIlePheCysTyrIleGl : 333 !!|||..!:!::!!||||||||||||||||||||||||||||||!!.||||||||||| hrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGl 305135 : CATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGG : 305191 334 : yGluIleLeuSerGluGlnCys{Gl} >>>> Target Intron 1 >>>> {y} : 341 ||||||||||! !|||:!! {.!} 413 bp {!} yGluIleLeuMetGluLysVal{Se}-+ ++{r} 305192 : TGAGATTCTTATGGAAAAGGTG{ag}tt.........................ag{T} : 305630 342 : GlnIleGlyAspThrAlaTyrMetThrAsnTrpTyrLeuLeuArgArgAsnAsnAlaV : 361 ...:!!||| :!!..!!:!|||! !!:!||||||! !|||! !! !!!.!.. ! SerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleH 305631 : AGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATAC : 305688 362 : alGlyPheValLeuIleIleLeuLysSerAsnValValValLysIleThrAlaGlyLy : 380 !|||.!!:!!||||||||| !! !|||!:! ! !!.!||||||!:!|||||||| isGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLy 305689 : ATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAA : 305745 381 : sMetIleGluLeuSerLeuSerThrPheGlyAspVal : 392 |:!::!!!!:|||||||||||||||||||||:!!||| sValValAspLeuSerLeuSerThrPheGlyAsnVal 305746 : AGTAGTTGATTTATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: CbirOr26 294 392 . KQ414889.1 305076 305783 + 195 M 46 138 S 0 2 5 0 2 I 0 409 3 0 2 S 1 1 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305077 305783 195 + . gene_id 23 ; sequence CbirOr26 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305077 305216 . + . KQ414889.1 exonerate:protein2genome:local exon 305077 305216 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305217 305218 . + . intron_id 1 ; splice_site "tt" KQ414889.1 exonerate:protein2genome:local intron 305217 305629 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305628 305629 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305630 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305630 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305077 305783 195 + . alignment_id 23 ; Query CbirOr26 ; Align 305077 295 138 ; Align 305631 342 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 338 -> 398 Target range: 238625 -> 238805 339 : GlnCysGlyGlnIleGlyAspThrAlaTyrMetThrAsnTrpTyrLeuLeuArgArgA : 358 |||||| !:!!:!!|||!!:..!!.!|||||||||:!!||||||! !|||! !!:!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 359 : snAsnAlaValGlyPheValLeuIleIleLeuLysSerAsnValValValLysIleTh : 377 ..!.. !:!!! !!!.:!!||||||||| !::!||||||||||||||||||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 378 : rAlaGlyLysMetIleGluLeuSerLeuSerThrPheGlyAspValIleLysSerAla : 396 ||||||||||:!::!!.!.:!!||||||! !|||||||||||||||! !:!!!!! ! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 397 : ValAla : 398 :!!||| LeuAla 238798 : CTTGCT : 238805 vulgar: CbirOr26 338 398 . KQ414889.1 238625 238805 + 165 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238805 165 + . gene_id 24 ; sequence CbirOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238805 165 + . alignment_id 24 ; Query CbirOr26 ; Align 238626 339 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 337 -> 392 Target range: 277548 -> 277713 338 : GluGlnCysGlyGlnIleGlyAspThrAlaTyrMetThrAsnTrpTyrLeuLeuArgA : 357 ..!|||||| !:!!:!!|||!!:..!!.!||||||||||||||||||! !|||! ! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 358 : rgAsnAsnAlaValGlyPheValLeuIleIleLeuLysSerAsnValValValLysIl : 376 !!!.:!! !:!!..!!!.:!!|||||||||! !!:!|||!:!:::|||:::||||| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 377 : eThrAlaGlyLysMetIleGluLeuSerLeuSerThrPheGlyAspVal : 392 |||||||||||||:::|||::::::|||:!!! !||||||||||||||| eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspVal 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTA : 277713 vulgar: CbirOr26 337 392 . KQ414889.1 277548 277713 + 160 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277713 160 + . gene_id 25 ; sequence CbirOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277549 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277713 160 + . alignment_id 25 ; Query CbirOr26 ; Align 277549 338 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 338 -> 392 Target range: 254271 -> 254433 339 : GlnCysGlyGlnIleGlyAspThrAlaTyrMetThrAsnTrpTyrLeuLeuArgArgA : 358 |||||| !:!!:!!|||!!:..!!.!|||||||||:!!||||||! !|||! !!:!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 359 : snAsnAlaValGlyPheValLeuIleIleLeuLysSerAsnValValValLysIleTh : 377 ..!.. !:!!! !!!.:!!||||||||| !::!|||||||||||||||:!!||||| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 378 : rAlaGlyLysMetIleGluLeuSerLeuSerThrPheGlyAspVal : 392 ||||||||||:::......:::||||||! !||||||||||||||| rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspVal 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTA : 254433 vulgar: CbirOr26 338 392 . KQ414889.1 254271 254433 + 158 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254433 158 + . gene_id 26 ; sequence CbirOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254433 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254433 158 + . alignment_id 26 ; Query CbirOr26 ; Align 254272 339 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 338 -> 392 Target range: 244655 -> 244817 339 : GlnCysGlyGlnIleGlyAspThrAlaTyrMetThrAsnTrpTyrLeuLeuArgArgA : 358 |||||| !:!!:!!|||!!:..!!.!|||||||||:!!||||||! !|||! !!:!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 359 : snAsnAlaValGlyPheValLeuIleIleLeuLysSerAsnValValValLysIleTh : 377 ..!.. !:!!! !!!.:!!||||||||| !::!||||||:!!||||||:!!||||| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 378 : rAlaGlyLysMetIleGluLeuSerLeuSerThrPheGlyAspVal : 392 ||||||||||:!::!!.!.:!!||||||! !||||||||||||||| rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspVal 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTA : 244817 vulgar: CbirOr26 338 392 . KQ414889.1 244655 244817 + 156 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244817 156 + . gene_id 27 ; sequence CbirOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244817 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244817 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244817 156 + . alignment_id 27 ; Query CbirOr26 ; Align 244656 339 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 328 -> 392 Target range: 224466 -> 224658 329 : PheCysTyrIleGlyGluIleLeuSerGluGlnCysGlyGlnIleGlyAspThrAlaT : 348 !:! !|||.!! !..!:!!!!!! ! |||||| :::||||||.....!:!!| TyrHisTyrPheLeuSerLeuPhePheProGlnCysGluLysIleGlyGlnValSerT 224467 : TACCACTATTTTTTATCGCTATTTTTTCCtcagtgtgaaaaaattggacaAGTGTCGT : 224524 349 : yrMetThrAsnTrpTyrLeuLeuArgArgAsnAsnAlaValGlyPheValLeuIleIl : 367 |||||! !:!!||||||! !|||! ! !!|||!!. !:!! !!! !:!!|||||||| yrMetIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIl 224525 : ACATGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAAT : 224581 368 : eLeuLysSerAsnValValValLysIleThrAlaGlyLysMetIleGluLeuSerLeu : 386 | !! !|||||| ! !:!!|||:!:|||||||||!!.|||:!!||||||!!!||| eAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeu 224582 : CGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTA : 224638 387 : SerThrPheGlyAspVal : 392 !!!||||||||||||||| ThrThrPheGlyAspVal 224639 : ACCACTTTCGGTGACGTA : 224658 vulgar: CbirOr26 328 392 . KQ414889.1 224466 224658 + 148 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224467 224658 148 + . gene_id 28 ; sequence CbirOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224467 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224467 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224467 224658 148 + . alignment_id 28 ; Query CbirOr26 ; Align 224467 329 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 338 -> 392 Target range: 264723 -> 264885 339 : GlnCysGlyGlnIleGlyAspThrAlaTyrMetThrAsnTrpTyrLeuLeuArgArgA : 358 |||||| !:!!:!!|||!!:..!!.!||||||:!!|||||||||! !|||! ! !! GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 359 : snAsnAlaValGlyPheValLeuIleIleLeuLysSerAsnValValValLysIleTh : 377 !.:!! !:!!! !.!.:!!||||||||||||!:!|||!:!|||||| !!|||.!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 378 : rAlaGlyLysMetIleGluLeuSerLeuSerThrPheGlyAspVal : 392 ||||||||||!!::!!.!.:!!|||:!!! !||||||.!!|||||| rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: CbirOr26 338 392 . KQ414889.1 264723 264885 + 148 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264885 148 + . gene_id 29 ; sequence CbirOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264885 148 + . alignment_id 29 ; Query CbirOr26 ; Align 264724 339 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 13 -> 118 Target range: 299665 -> 299989 14 : PheSerTyrAlaAspAspThrGluTyrSerIleGlnProIleArgTrpLeuLeuArgP : 33 !:! !||| !:!!|||! !.!.|||!!!:!:||| ! !!:!|||||||||!:!| TyrHisTyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysP 299666 : TACCATTACCAAAATGACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGAAAC : 299723 34 : roIleSerValTrpProVal<-><-><-><->SerSerIleLysGluArgIleLeuSe : 48 |||||.!!||||||! !:!! ||||||! !|||!.!:!!:!!|| roIleGlyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuValSe 299724 : CTATCGGAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTC : 299780 49 : rAlaValLeuLeuIleValCysValPheLeuIleAlaGlyThrLeuValProCysAla : 67 | !||||||:!!! !:!!||| !!! ! !:!: ! !! !:!!:!!|||! !!.! rIleValLeuMetThrIleCysPheSerSerLeuPhePheIleValLeuProSerGly 299781 : GATCGTTCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGT : 299837 68 : LeuAlaIlePheLeuAspGlnAsnLysAspValGluThrLysValArgAspPheGlyP : 87 ! ! !||||||!!!! :!! |||..!:!!.!...!||||||!:!! ||||||| HisTyrIlePhePheAlaGlu---LysSerIleHisValLysValLysValPheGlyP 299838 : CATTACATCTTCTTCGCGGAG---AAAAGTATACACGTCAAGGTGAAAGTATTCGGTC : 299894 88 : roLeuSerAsnTrpValLeuAlaSerLeuLysTyrCysSerLeuLeuSerHisValGl : 106 ||:!!.!! !!! :!!! !:!!! !:!!|||||||||! !|||! ! !:!!! !|| roValGlyPheCysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGl 299895 : CGGTTGGTTTTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGG : 299951 107 : yAspIleArgArgCysLeuGluHisValAspAlaAsp : 118 |! .!!..!||||||:!!:!!||||||!!: !||| yAlaPheGluArgCysIleGlnHisValGluArgAsp 299952 : CGCGTTCGAACGATGCATCCAACACGTCGAGAGAGAC : 299989 vulgar: CbirOr26 13 118 . KQ414889.1 299665 299989 + 141 M 26 78 G 0 12 M 35 105 G 1 0 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299666 299989 141 + . gene_id 30 ; sequence CbirOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299666 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299666 299989 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 299666 299989 141 + . alignment_id 30 ; Query CbirOr26 ; Align 299666 14 78 ; Align 299756 40 105 ; Align 299861 76 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 337 -> 392 Target range: 283273 -> 283438 338 : GluGlnCysGlyGlnIleGlyAspThrAlaTyrMetThrAsnTrpTyrLeuLeuArgA : 357 ..!|||||| !:!!:!!|||!!:..!!.!||||||||||||! !!:!! !|||! ! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 358 : rgAsnAsnAlaValGlyPheValLeuIleIleLeuLysSerAsnValValValLysIl : 376 !!!.:!! !:!!..!!!.:!!|||||||||! !!:!|||!:!:::|||:::||||| spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 377 : eThrAlaGlyLysMetIleGluLeuSerLeuSerThrPheGlyAspVal : 392 |||||||...|||:::|||:::::!||| !! !||||||! !|||||| eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspVal 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTA : 283438 vulgar: CbirOr26 337 392 . KQ414889.1 283273 283438 + 126 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283438 126 + . gene_id 31 ; sequence CbirOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283438 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283438 126 + . alignment_id 31 ; Query CbirOr26 ; Align 283274 338 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 300 -> 339 Target range: 224317 -> 224434 301 : IleMetAspTrpThrGlnGlyAspLysGluSerIleValSerTyrValIleIleLeuI : 320 .!!...:::|||:::...... !! ! ||| |||!!!||| !!|||:!!|||! PheGlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuM 224318 : TTTCaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCA : 224375 321 : leSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGl : 339 !:|||:::||||||||||||||||||||||||||||||||||||:!::!!:!!||||| etSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl 224376 : TGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAca : 224432 340 : n : 339 | n 224433 : g : 224434 vulgar: CbirOr26 300 339 . KQ414889.1 224317 224434 + 122 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224318 224434 122 + . gene_id 32 ; sequence CbirOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224318 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224318 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224318 224434 122 + . alignment_id 32 ; Query CbirOr26 ; Align 224318 301 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 342 -> 392 Target range: 206251 -> 206401 343 : IleGlyAspThrAlaTyrMetThrAsnTrpTyrLeuLeuArgArgAsnAsnAlaValG : 362 :!:||| |||:!!! !! !..!|||||||||! !|||! !!.!!..:!!||| !. ValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgS 206252 : GTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCT : 206309 363 : lyPheValLeuIleIleLeuLysSerAsnValValValLysIleThrAlaGlyLysMe : 381 .!.!.:!!||||||||| !! !|||||| ! !:!!|||:!!|||||||||||||| erMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMe 206310 : CTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAAT : 206366 382 : tIleGluLeuSerLeuSerThrPheGlyAspVal : 392 |.!!|||:!!||||||:!!!:!||| !|||||| tPheGluMetSerLeuAlaSerPheThrAspVal 206367 : GTTCGAAATGTCTTTAGCTAGTTTCACCGATGTA : 206401 vulgar: CbirOr26 342 392 . KQ414889.1 206251 206401 + 120 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206252 206401 120 + . gene_id 33 ; sequence CbirOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206252 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206252 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206252 206401 120 + . alignment_id 33 ; Query CbirOr26 ; Align 206252 343 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 268 -> 339 Target range: 263671 -> 264648 269 : SerPheValSerTyrIleAspLysIleThrAsnIleIleCysLeuValGluValMetG : 288 ||||||:!!..! !||| ! !!.:!:! !!:!! ||||||!!!||||||:!!.!. SerPheIleAspArgIleLysAsnValMetSerThrIleCysPheValGluLeuPheL 263672 : AGTTTCATAGATCGTATTAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCA : 263729 289 : lyCysThrLeuHisMetCys{Le} >>>> Target Intron 1 >>>> {u}Le : 296 !..!|||||| !!!!:|||{:!} 764 bp {!}:! ysAlaThrLeuAspIleCys{Il}+- +-{e}Il 263730 : AGGCTACGCTGGATATATGC{AT}gc.........................aa{T}AT : 264517 297 : uGlyTyrTyrCysIleMetAspTrpThrGlnGlyAspLysGluSerIleValSerTyr : 315 ! ! ! !! !.!!..!!!:||| !... ||| :::::::::..!!!!||| eThrIleAspValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyr 264518 : AACAATTGACGTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATAT : 264574 316 : ValIleIleLeuIleSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluI : 335 !!!!:||||||||||||:!! ! !|||||||||:!!.!.|||||||||||||||| PheMetIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluI 264575 : TTCATGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGA : 264634 336 : leLeuSerGluGln : 339 |||||!!!|||||| leLeuThrGluGln 264635 : TATTGACTGAGcag : 264648 vulgar: CbirOr26 268 339 . KQ414889.1 263671 264648 + 113 M 26 78 S 0 2 5 0 2 I 0 760 3 0 2 S 1 1 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 263672 264648 113 + . gene_id 34 ; sequence CbirOr26 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 263672 263751 . + . KQ414889.1 exonerate:protein2genome:local exon 263672 263751 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263752 263753 . + . intron_id 1 ; splice_site "GC" KQ414889.1 exonerate:protein2genome:local intron 263752 264515 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264514 264515 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 264516 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264516 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 263672 264648 113 + . alignment_id 34 ; Query CbirOr26 ; Align 263672 269 78 ; Align 264517 296 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 302 -> 339 Target range: 277371 -> 277482 303 : AspTrpThrGlnGlyAspLysGluSerIleValSerTyrValIleIleLeuIleSerV : 322 !!:|||:!!.!..!!||| :!!!!!!!:..!!!!:!! !!!!:||||||||||||: GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 323 : alThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln : 339 !: |||||||||||| ! ! |||||||||||||||||||||!!!|||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAG : 277482 vulgar: CbirOr26 302 339 . KQ414889.1 277371 277482 + 111 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277482 111 + . gene_id 35 ; sequence CbirOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277482 111 + . alignment_id 35 ; Query CbirOr26 ; Align 277372 303 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 338 -> 401 Target range: 292389 -> 292578 339 : GlnCysGlyGlnIleGlyAspThrAlaTyrMetThrAsnTrpTyrLeuLeuArgArgA : 358 ||| !!.!!:!!|||!.! !!.!!:!!||| |||.!.|||||| !|||! !|||. GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 359 : snAsnAlaValGlyPheValLeuIleIleLeuLysSerAsnValValValLysIleTh : 377 ..!!.||| !! !.!!||||||:!::!! !! !!!!!!. ! !:!!|||:!!|| rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 378 : rAlaGlyLysMetIleGluLeuSerLeuSerThrPheGlyAspValIleLysSerAla : 396 ||||||||||!!:.!!! |||||||||!:!|||||||||! !||| !:!!||| ! rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSerLys 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCAAAA : 292561 397 : ValAlaTyrLeuAsn : 401 :!!!.!! :!!:!! LeuValLeuIleHis 292562 : CTAGTCTTGATACAC : 292578 vulgar: CbirOr26 338 401 . KQ414889.1 292389 292578 + 109 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 292578 109 + . gene_id 36 ; sequence CbirOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292390 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 292578 109 + . alignment_id 36 ; Query CbirOr26 ; Align 292390 339 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 302 -> 339 Target range: 291368 -> 291479 303 : AspTrpThrGlnGlyAspLysGluSerIleValSerTyrValIleIleLeuIleSerV : 322 !!:||| !....!!|||..! .!!|||:!!!!!||||||! !:!!|||! !||| GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 323 : alThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln : 339 !!||||||||||||.!.||||||||||||:!!||||||:!!||| !! !||| heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAG : 291479 vulgar: CbirOr26 302 339 . KQ414889.1 291368 291479 + 107 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 291479 107 + . gene_id 37 ; sequence CbirOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 291479 107 + . alignment_id 37 ; Query CbirOr26 ; Align 291369 303 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 302 -> 339 Target range: 283096 -> 283207 303 : AspTrpThrGlnGlyAspLysGluSerIleValSerTyrValIleIleLeuIleSerV : 322 !!:|||:!!.!.|||||| :!!!!!!!:..!!!!:!! !!!!:||||||||||||: GluTrpSerAspGlyAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 283097 : GAATGGTCTGACGGCGATGTTCAGACTATGACTACGCATTTCATGATCCTTATATCCA : 283154 323 : alThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln : 339 !: |||||||||||| ! ! ! !|||||||||:!!||||||!!!|||||| etCysPheAsnIlePheThrValTyrTyrIleGlyLysIleLeuThrGluGln 283155 : TgtgtttcaacatttttacAGTATACTATATCGGGAAAATACTAACTGAACAG : 283207 vulgar: CbirOr26 302 339 . KQ414889.1 283096 283207 + 102 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283097 283207 102 + . gene_id 38 ; sequence CbirOr26 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283097 283207 . + . KQ414889.1 exonerate:protein2genome:local exon 283097 283207 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283097 283207 102 + . alignment_id 38 ; Query CbirOr26 ; Align 283097 303 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 729 Query range: 9 -> 403 Target range: 289705 -> 293242 10 : SerAsnValAsnCysGluGlyAspIleValAsnThrLeuIleTrpAsnArgTrpLeuL : 29 ||||||! !..!! !||| !|||||| ! !!|||!!! !! !!.!|||:!!| SerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleL 289706 : TCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCT : 289763 30 : euArgValLeuGlyIleTrpProLeuValTyrProAsnThrThrLysIleGluLysIl : 48 ||!:! !:!!|||!!:!::|||!!!|||!:! !..!.!!!:!!:! !|||::!! euLysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgTh 289764 : TGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAAC : 289820 49 : eIleAlaMetPheSerPheValLeuCysTrpIleValLeuSerLeuPheLeuValLeu : 67 :!!:!!!!. !.!!:!!:!!|||!! :!!|||..!!!!.!!:!!|||! ! rAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValPro 289821 : GGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCG : 289877 68 : ThrSerIleTyrThrPheSerGluArgSerIleMetArgGluLysMetLysMetLeuG : 87 !||| !:!!..!.!.! !... !!:! !|||!.! ! :!:|||! |||| PheSerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuG 289878 : TTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCG : 289937 88 : lyProLeuGlyTyrValPhePheSerMetLeuLysTyrPhePheLeuValAlaArgHi : 106 |||||||| !!:! !!!. !!!!.!.!!!||||||! !!:!!!! ! !!:! lyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGl 289938 : GACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGG : 289994 107 : sLysSerIleArgGlnCysValGlnValLeuSerAlaAspTrpArgArgValGluGlu : 125 !..!:!!||| !!!::||||||:!! !:!!..! !||||||!:!! !:!!...!!: ySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAsp 289995 : TTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGAC : 290051 126 : AspAspHisArgGluIleMetMetArgGlyAlaGluLysGlyHisLeuLeuSerLysP : 145 !!:|||||||||! ||||||:!:||| !!.! !! !.!!!.. !|||! !|||. GluAspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysL 290052 : GAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAAC : 290111 146 : heCysIleAlaPheMetTyrCysGlyGlyLeuSerTyrAsnThrIleMetProPheLe : 164 !.||| !|||:!!||| |||||||||||||||||||||:!!!!:|||!!.!! euCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPh 290112 : TGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTT : 290168 165 : uSerGlnThrSer<->GluGlnAsnValThrValArgProMetAlaTyrLeuGlyPhe : 182 !|||:!!! !||| .!. |||||||||:!!||||||:!:.!!|||! !|||!:! eSerLysLysSerValAsnGlyAsnValThrIleArgProLeuThrTyrProGlyTyr 290169 : CTCGAAGAAGAGCGTGAACGGTAACGTGACTATCAGACCTCTAACTTATCCCGGTTAC : 290225 183 : AspIleLeuPheAsnLeuGlnLeuMetProValTyrValPheAlaPheCysLeuGlnC : 202 !!: !!!|||:!!:!!||| !! |||!.!|||! !.!!!.!||||||:!!!!.| GluGluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetHisC 290226 : GAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACT : 290285 203 : ysValThrGlyIleValMetPheAsnIleThrThrValValCysCysLeuAlaAlaMe : 221 ||||| !! !!!::!!! ! |||||||||! !!.!!.!! ! !!|||.!!.!!!! ysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIl 290286 : GTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGAT : 290342 222 : tPheValAlaHisAlaCysGlyGlnValAspIleValLeuAlaArgValLysSerLeu : 240 :|||!.!.!!|||.!!|||||||||:!! ! ||| ! !.!!|||:!!:!!..!||| ePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAspLeu 290343 : CTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTG : 290399 241 : ValLysGlyGluLysArgAsnArgValGlnPheGluGlnCysMetAlaIleIleValG : 260 ..!||| !!! !! !! ! ..! ! ! ! ....!. !!:!!|||:!!:!!|||. ThrLysArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValValValS 290400 : ACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTGTGA : 290459 261 : lnHisHisValArgValLeu{Ar} >>>> Target Intron 1 >>>> {g}Ph : 268 .. !||||||..!:!!|||{!:} 655 bp {!}|| erGlyHisValGluIleLeu{Ly}++ ++{s}Ph 290460 : GCGGTCACGTGGAGATCTTG{AA}gt.........................ag{A}TT : 291138 269 : eSerAlaAsnIleGluAspThrLeuArgGluIleCysLeuValGluPheValGlyThr : 287 |!!! !! ||||||..!.!!|||!.!||||||! !|||:!!||| ! :!!! !:!! eThrArgMetIleGluSerAlaLeuHisGluIlePheLeuIleGluValIleValSer 291139 : CACGAGGATGATCGAAAGCGCGTTGCATGAAATATTCTTGATAGAAGTAATAGTATCC : 291195 288 : ThrLeuIleMetCysLeuIleGluTyrSerLeuIleThr >>>> Target Intro : 301 |||:!!:!!:!:||||||||||||||| !|||!!:! ! 132 bp ThrValLeuLeuCysLeuIleGluTyrLeuLeuMetMet++ 291196 : ACTGTGTTACTATGCTTGATCGAATATCTCTTAATGATGgt................. : 291239 302 : n 2 >>>> GluTrpAsnAsnSerAspSerIleAlaIleLeuThrTyrPhePheLeu : 316 ||||||.!.!:!||||||||||||!.!|||||||||||| !! !||| ++GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeu 291240 : ........agGAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTC : 291414 317 : PheValSerPheAlaPheAsnIlePheMetPheCysHisIleGlyGluLeuLeuThrG : 336 .!!..!||||||.!!|||||||||.!.!!:||||||:!!:!!|||||||||||| !! LeuThrSerPheThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuG 291415 : CTCACTTCTTTCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTG : 291474 337 : luGln >>>> Target Intron 3 >>>> CysIleLysValGlyTyrThrSer : 345 !||| 913 bp !!! !:!!:!!!.!:!!.!!||| lyGln++ ++GlySerGluIleAlaHisAlaSer 291475 : GACAGgt.........................agGGTAGTGAAATCGCGCACGCTTCC : 292414 346 : TyrLysIleGluTrpTyrGluLeuProGlyLysAlaAlaLeuAspLeuMetPheMetI : 365 ||| ! ! !|||||||||.!.|||||| !!::! !|||! !|||:!!:!:.!.:!!: TyrAspThrGluTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuValL 292415 : TACGATACAGAATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGC : 292474 366 : leThrMetSerArgHisProValGlnIleThrAlaGlyLysLeuIleSerLeuSerPh : 384 !!.!!!!:!!!!:!||||||:!!:!!:!!||||||||||||:!!.!! !||||||!! euAlaIleThrLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSerLe 292475 : TTGCCATAACGAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTT : 292531 385 : eThrAsnPheGlyAsn >>>> Target Intron 4 >>>> ValLeuLysThrS : 394 .!.!!.!|||||| ! 652 bp |||||||||:!!| uAsnThrPheGlyAla++ ++ValLeuLysSerS 292532 : GAACACTTTTGGCGCTgt.........................agGTGCTGAAATCGT : 293213 395 : erValAlaTyrMetAsnLeuIleArgThr : 403 |||||!.!|||||||||:!!:!!|||||| erValValTyrMetAsnMetLeuArgThr 293214 : CGGTAGTTTACATGAACATGCTACGAACC : 293242 vulgar: CbirOr32 9 403 . KQ414889.1 289705 293242 + 729 M 159 477 G 0 3 M 98 294 S 0 2 5 0 2 I 0 651 3 0 2 S 1 1 M 33 99 5 0 2 I 0 128 3 0 2 M 37 111 5 0 2 I 0 909 3 0 2 M 52 156 5 0 2 I 0 648 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289706 293242 729 + . gene_id 1 ; sequence CbirOr32 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 289706 290481 . + . KQ414889.1 exonerate:protein2genome:local exon 289706 290481 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 290482 290483 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 290482 291136 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 291135 291136 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 291137 291236 . + . KQ414889.1 exonerate:protein2genome:local exon 291137 291236 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291237 291238 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291237 291368 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 291367 291368 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292548 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292548 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 292549 292550 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 292549 293200 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 293199 293200 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 293201 293242 . + . KQ414889.1 exonerate:protein2genome:local exon 293201 293242 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289706 293242 729 + . alignment_id 1 ; Query CbirOr32 ; Align 289706 10 477 ; Align 290186 169 294 ; Align 291138 268 99 ; Align 291369 301 111 ; Align 292393 338 156 ; Align 293201 390 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 622 Query range: 14 -> 400 Target range: 284508 -> 287252 15 : GluGlyAspIleValAsnThrLeuIleTrpAsnArgTrpLeuLeuArgValLeuGlyI : 34 !!: !||| :!! !!!:!:!! !|||||||||!!!|||!:! !:!!|||: AspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyV 284509 : GACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCG : 284566 35 : leTrpProLeuValTyrProAsnThrThrLysIleGluLysIleIleAlaMetPheSe : 53 !!||||||||| ! ! ! |||||| ! !:!!! ! ! !!.!:!:.!!:! alTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAl 284567 : TATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGC : 284623 54 : rPheValLeuCysTrpIleValLeuSerLeuPheLeuValLeuThrSerIleTyrThr : 72 !!!.:!! !|||!:::!::!! !! !|||!!.:!! !! !.!! ! ! ..! aLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrVal 284624 : GTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTG : 284680 73 : PheSerGluArgSerIleMetArgGluLysMetLysMetLeuGlyProLeuGlyTyrV : 92 .!!..!:!!! !.!! !:!: ! !|||!!:||||||:!!|||||||||.!!!:! LeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheC 284681 : CTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCT : 284740 93 : alPhePheSerMetLeuLysTyrPhePheLeuValAlaArgHisLysSerIleArgGl : 111 !.!..!.:!! !:!!||||||!:!.!!|||:!!:!!||| ! !.!||| !!|| ysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGl 284741 : GCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCA : 284797 112 : nCysValGlnValLeuSerAlaAsp{Tr} >>>> Target Intron 1 >>>> : 120 |||||||:!!! !:!! !!||||||{||} 1012 bp nCysValLysAspIleArgAlaAsp{Tr}++ +- 284798 : ATGCGTGAAGGACATTCGTGCGGAC{TG}gt.........................ac : 285836 121 : {p}ArgArgValGluGluAspAspHisArgGluIleMetMetArgGlyAlaGluLysG : 139 {|}! ! ! !...:::::::::...||||||||||||! ! !.!!|||..!! | {p}LeuSerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleG 285837 : {G}CTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTG : 285893 140 : lyHisLeuLeuSerLysPheCysIleAlaPheMetTyrCysGlyGlyLeuSerTyrAs : 158 ||!..! !|||:!!! |||||| !!.!|||||||||! !||||||!!!! !|||!. lyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrTh 285894 : GACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACAC : 285950 159 : nThrIleMetProPheLeuSerGlnThrSerGlu<-><->GlnAsnValThrValArg : 175 !|||:!:||||||!!.! !!!! ! !!!!||| .!.|||! !||||||||| rThrValMetProLeuCysThrValArgThrGluIleIleAspAsnGluThrValArg 285951 : CACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGA : 286007 176 : ProMetAlaTyrLeuGlyPheAspIleLeuPheAsnLeuGlnLeuMetProValTyrV : 195 !!...|||!:!! ! !!:! ! !|||.!!:!!! !!:: !! ||| !!:!! SerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheG 286008 : TCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCG : 286067 196 : alPheAlaPheCysLeuGlnCysValThrGlyIleValMetPheAsnIleThrThrVa : 214 !.!!!.! ! !:!!||||||:!!.!!!.!.!!|||!!:!:!::::!!|||..!! luIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGl 286068 : AGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGG : 286124 215 : lValCysCysLeuAlaAlaMetPheValAlaHisAlaCysGlyGlnValAspIleVal : 233 !!.!||| !!|||||||||:!!|||||| !|||!.!||||||||| !! |||:!! yAlaCysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeu 286125 : AGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTT : 286181 234 : LeuAlaArgValLysSerLeuValLysGlyGluLys<-><->ArgAsnArgValGlnP : 251 :!!.!!!:!:!! ! !.!|||||| ! |||! !||| !:!... ! ! ! ValThrLysLeuAspLysLeuValAspGlyValLysGlyArgLysGlyLeuSerThrH 286182 : GTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGC : 286241 252 : heGluGlnCysMetAlaIleIleValGlnHisHisValArgValLeu{Ar} >>>> : 267 !|||||| ! :!!!.! !|||:!!:!!||||||:!!!:!:!!|||{ !} isGluGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 286242 : ATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt..... : 286293 268 : Target Intron 2 >>>> {g}PheSerAlaAsnIleGluAspThrLeuArgGlu : 278 408 bp {!}|||! !:!!.!.||||||! !|||!.!||| ++{y}PheIleSerGlnIleGluGlyLeuLeuAsnGlu 286294 : ....................ag{T}TTTATATCGCAAATCGAGGGGCTCCTAAACGAA : 286730 279 : IleCysLeuValGluPheValGlyThrThrLeuIleMetCysLeuIleGluTyrSerL : 298 ||||||!!!|||||| ! :!!||| !||||||! !!!:|||!!!:!:! !|||! !| IleCysPheValGluValIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrL 286731 : ATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGGGATATTATT : 286790 299 : euIleThr >>>> Target Intron 3 >>>> GluTrpAsnAsnSerAspSer : 307 ||:!:||| 80 bp ||||||.!..!.|||!!:!!! euLeuThr++ ++GluTrpGluGlnSerGluThr 286791 : TACTGACGgt.........................agGAATGGGAGCAAAGTGAAACT : 286897 308 : IleAlaIleLeuThrTyrPhePheLeuPheValSerPheAlaPheAsnIlePheMetP : 327 |||!.!! :!!||||||! ! |||.!.|||||||||.!!||||||:!!|||!!:. IleGlyThrIleThrTyrCysThrLeuLeuValSerPheThrPheAsnValPheIleL 286898 : ATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATAC : 286957 328 : heCysHisIleGlyGluLeuLeuThrGluGln >>>> Target Intron 4 >>> : 338 !!|||:!!|||||||||:!!|||:!!|||||| 74 bp euCysTyrIleGlyGluIleLeuSerGluGln++ 286958 : TCTGTTACATCGGTGAAATTCTCTCCGAACaggt........................ : 286992 339 : > CysIleLysValGlyTyrThrSerTyrLysIleGluTrpTyrGluLeuProGlyL : 356 |||:!!|||||||||! :!!!!!|||! !|||!!:||||||...|||||||||| ++CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyL 286993 : .agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAA : 287118 357 : ysAlaAlaLeuAspLeuMetPheMetIleThrMetSerArgHisProValGlnIleTh : 375 ||.!!|||! !! !|||!!:.!.!!:.!!.!!:!!|||!.! ! !!:!!:!!:!!|| ysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuTh 287119 : AAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAAC : 287175 376 : rAlaGlyLysLeuIleSerLeuSerPheThrAsnPheGlyAsnValLeuLysThrSer : 394 ||||||||||:!!|||..!||||||!!.!:!!:!||| !!!:!||| !! ! !!:! rAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsn 287176 : AGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAAT : 287232 395 : ValAlaTyrMetAsnLeu : 400 :!!:!!||| :!!||| LeuSerTyrTyrHisLeu 287233 : TTATCCTATTATCATTTG : 287252 vulgar: CbirOr32 14 400 . KQ414889.1 284508 287252 + 622 M 105 315 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 49 147 G 0 6 M 76 228 G 0 6 M 21 63 S 0 2 5 0 2 I 0 404 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284509 287252 622 + . gene_id 2 ; sequence CbirOr32 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284509 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284509 284825 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286698 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 4 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 3 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284509 287252 622 + . alignment_id 2 ; Query CbirOr32 ; Align 284509 15 315 ; Align 285839 121 147 ; Align 285992 170 228 ; Align 286226 246 63 ; Align 286700 268 99 ; Align 286879 301 111 ; Align 287064 338 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 462 Query range: 24 -> 336 Target range: 226945 -> 228355 25 : AsnArgTrpLeuLeuArgValLeuGlyIleTrpProLeuValTyrProAsnThrThrL : 44 |||||||||||||||!:! !||||||||||||||| !! ! !!!.!:!:!!: AsnArgTrpLeuLeuLysProLeuGlyIleTrpPro---SerSerArgLysSerSerA 226946 : AATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCG---TCGTCGCGCAAAAGCTCTC : 227000 45 : ysIleGluLysIleIleAlaMetPheSerPheValLeuCysTrpIleValLeuSerLe : 63 :!|||! !!:! !.!!:!! !!!.! ! ! !!||||||!:: :!!:!!|||!! rgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPh 227001 : GAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTT : 227057 64 : uPheLeuValLeuThrSerIleTyrThrPheSerGluArgSerIleMetArgGluLys : 82 ! ||||||! !!:!.!!:!:|||..! !! !||| !!.! ! !.!.! ! eGluLeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThr 227058 : CGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACG : 227114 83 : MetLysMetLeuGlyProLeuGlyTyrValPhePheSerMetLeuLysTyrPhePheL : 102 :!!||||||:!!||||||:!!..!!:! !! .!.|||:!:|||||||||! !.!.| LeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetL 227115 : CTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGT : 227174 103 : euValAlaArgHisLysSerIleArgGlnCysValGlnValLeuSerAlaAspTrpAr : 121 ||..! !!.!.!. ! ..!|||! !:!!||||||:!! !:!!!.! !||||||!: euThrPheHisGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLy 227175 : TGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAA : 227231 122 : gArgValGluGluAspAspHisArgGluIleMetMetArgGlyAlaGluLysGlyHis : 140 !!.!:!!..! ! !!: !!|||.!.:!:|||:!!! ! !||| ! ! |||... sAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArg 227232 : GAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGA : 227288 141 : LeuLeuSerLysPheCysIleAlaPheMetTyrCysGlyGlyLeuSerTyrAsnThrI : 160 !|||! !! .!!|||! !|||:!:!:! ... ::: ::: ! !: LysLeuIleThrIleCysThrPhePheValPheSerSerPheValPhePheTyrIleV 227289 : AAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCG : 227348 161 : leMetProPheLeuSer<-><-><->GlnThrSerGluGlnAsnValThrValArgPr : 176 !!:!:|||.!! !:!! !|||..!!!: !||| !!:! !! !! alValProIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIleGl 227349 : TCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCA : 227405 177 : oMetAlaTyrLeuGlyPheAspIleLeuPheAsnLeuGlnLeuMetProValTyrVal : 195 !||| !!!:!! ! ! ! |||:!! !:!!:!!!::! !! ||| !! !!! ! nMetProPheProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGlu 227406 : GATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAG : 227462 196 : PheAlaPheCysLeuGlnCysValThrGlyIleValMetPheAsnIleThrThrValV : 215 .!! !|||! :!!|||! !|||||||||||||||:!! !..!:!!|||:!!!.!! IlePhePheSerValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaA 227463 : ATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTG : 227522 216 : alCysCysLeuAlaAlaMetPheValAlaHisAlaCysGlyGlnValAspIleValLe : 234 .!||| !!:!!||||||:!!.!!!.!!.!|||||||||||||||:!!!!::!::!!:! laCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuVa 227523 : CTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGT : 227579 235 : uAlaArgValLysSerLeuValLysGlyGluLysArgAsnArgValGlnPheGluGln : 253 !:!! !!:!! ! !|||:!! ! |||..! ! !! !!! ! !.!.!!:.!. lSerTrpLeuGlyHisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAspAsp 227580 : GTCCTGGCTGGGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGATGAT : 227636 254 : CysMetAlaIleIleValGlnHisHisValArgValLeu{Ar} >>>> Target I : 267 ! !!:|||! !|||||| ||||||||||||:!!|||{!.} 396 ArgIleAlaSerIleValThrHisHisValArgIleLeu{As}++ 227637 : AGAATCGCTAGCATCGTCACTCACCACGTTCGAATATTG{AA}gt............. : 227682 268 : ntron 1 >>>> {g}PheSerAlaAsnIleGluAspThrLeuArgGluIleCysLe : 281 bp {!}||| !||| !|||||| ! |||:!!!:!:!!|||..!!! ++{n}PheLeuAlaLeuIleGluLysThrMetGlnGlnIleAlaPh 227683 : ............ag{C}TTTCTGGCCCTCATAGAGAAAACCATGCAGCAAATAGCTTT : 228116 282 : uValGluPheValGlyThrThrLeuIleMetCysLeuIleGluTyrSerLeuIleThr : 300 !|||||||||:!!||| !|||:!!|||:!!|||||||||||||||! !:!!|||||| eValGluPheLeuGlyCysThrIleIleLeuCysLeuIleGluTyrTyrIleIleThr 228117 : CGTAGAATTTTTAGGGTGTACAATAATTCTGTGCCTCATCGAGTATTACATCATAACG : 228173 301 : >>>> Target Intron 2 >>>> GluTrpAsnAsnSerAspSerIleAlaIl : 310 72 bp ||||||||| !.!!!:! !! ! ! ++ ++GluTrpAsnProLysGluLeuThrPheAl 228174 : gt.........................agGAATGGAATCCGAAAGAGTTAACATTTGC : 228275 311 : eLeuThrTyrPhePheLeuPheValSerPheAlaPheAsnIlePheMetPheCysHis : 329 !:!!||||||! |||.!!:!!||||||...||||||||||||:::||||||::! aValThrTyrSerAlaLeuLeuLeuSerPheThrPheAsnIlePheIlePheCysTyr 228276 : TGTAACTTACTCAGCGTTACTTTTATCCTTTAccttcaatattttcatattttgttaT : 228332 330 : IleGlyGluLeuLeuThrGlu : 336 |||||||||:!!:!!.!!||| IleGlyGluIleValAlaGlu 228333 : ATAGGAGAAATTGTTGCCGAA : 228355 vulgar: CbirOr32 24 336 . KQ414889.1 226945 228355 + 462 M 12 36 G 1 0 M 128 384 G 0 9 M 101 303 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226946 228355 462 + . gene_id 3 ; sequence CbirOr32 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226946 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226946 227679 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228355 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228355 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226946 228355 462 + . alignment_id 3 ; Query CbirOr32 ; Align 226946 25 36 ; Align 226982 38 384 ; Align 227375 166 303 ; Align 228077 268 99 ; Align 228248 301 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 459 Query range: 9 -> 390 Target range: 232429 -> 235147 10 : SerAsnValAsnCysGluGlyAspIleValAsnThrLeuIleTrpAsnArgTrpLeuL : 29 ..!!..:!!|||..! ! !!||| !! ! !!!:!:!! !|||||||||!!!| AspThrLeuAsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheL 232430 : GACACGTTGAACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTC : 232487 30 : euArgValLeuGlyIleTrpProLeuValTyrProAsnThrThrLysIleGluLysIl : 48 ||! ! !:!!||| !||||||! !||| !!.!.|||:!!!:! !:!!:!!:! euThrProMetGlyAlaTrpProArgVal---ThrGluThrSerArgAlaGlnGlnLe 232488 : TGACACCGATGGGCGCATGGCCGCGTGTT---ACAGAGACCTCGAGAGCCCAGCAACT : 232541 49 : eIleAlaMetPheSerPheValLeuCysTrpIleValLeuSerLeuPheLeuValLeu : 67 !:!!|||! .!.! ! :!! !||| !:!!:!!! !! !! :!!|||! ! uLeuAlaLysLeuLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValPro 232542 : ACTCGCGAAACTGTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCG : 232598 68 : ThrSerIleTyrThrPheSerGluArgSerIleMetArgGluLysMetLysMetLeuG : 87 !! !:!:!:!! !.!.! !||| !!!!! !:!:..!|||!:!|||||| :!!| CysIleLeuPheIleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleG 232599 : TGCATTCTGTTCATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCG : 232658 88 : lyProLeuGlyTyrValPhePheSerMetLeuLysTyrPhePheLeuValAlaArgHi : 106 |||||:!!.!!:!! !!.!..!..!! |||!!.|||! !! !|||:!!|||!:! lyProMetSerHisPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAl 232659 : GTCCTATGAGTCACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGC : 232715 107 : sLysSerIleArgGlnCysValGlnValLeuSerAlaAspTrpArgArgValGluGlu : 125 !!...!|||! ! ! ||||||:!! !:!!!.! !|||||||||!.!|||:!!:!! aAsnAspIleLeuTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLys 232716 : GAACGACATCCTCTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAA : 232772 126 : AspAspHisArgGluIleMetMetArgGlyAlaGluLysGlyHisLeuLeuSerLysP : 145 !! !||||||!!::!:|||:!!!:!..!|||:!! |||!.!! !:!!:!! . ProValHisArgAspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysI 232773 : CCCGTCCATCGTGATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCA : 232832 146 : heCysIleAlaPheMetTyrCysGlyGlyLeuSerTyrAsnThrIleMetProPheLe : 164 !!..! !! !|||:!! !|||! ! !||| !!.!.! !:!!! !.!!! leAlaAlaPheCysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuAr 232833 : TCGCTGCGTTTTGCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCG : 232889 165 : uSerGlnThr<-><-><->SerGluGlnAsnValThrValArgProMetAlaTyrLeu : 180 !! !...||| .!!.!.:!!!:! !:!!:!! !|||:!: !!! ! ! gMetSerThrPheTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThr 232890 : TATGAGCACGTTCTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACG : 232946 181 : GlyPheAspIleLeuPheAsnLeuGlnLeuMetProValTyrValPheAlaPheCysL : 200 !!:! ! |||.!.:!! !::!!!!! |||..! !!! !.!. !||| !| PheTyrThrLysLeuMetAspThrArgPheSerProThrAsnGluIleMetPheValL 232947 : TTCTACACGAAGCTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTC : 233006 201 : euGlnCysValThrGlyIleValMetPheAsnIleThrThrValValCysCysLeuAl : 219 ||||||||:!!:!!|||.!!:!!:!! !::!:!!|||..!! !!.!||| !!|||!. euGlnCysLeuSerGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGl 233007 : TACAGTGTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGG : 233063 220 : aAlaMetPheValAlaHisAlaCysGlyGlnValAspIleValLeuAlaArgValLys : 238 !|||:!:.!.!.! !|||||||||||||||:!!:!!:!:|||:!!:!!!:!:!! ! yAlaValLeuAlaMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAsp 233064 : CGCTGTTCTAGCGATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGAC : 233120 239 : SerLeuValLysGlyGluLysArgAsnArgValGlnPheGluGlnCysMetAlaIleI : 258 ..!|||||| ! !.!:!! !!:!.!...! ! :!!::! :!:!.!.!!| AspLeuValAspAlaLysGlyGlnGluGluArgValAlaGlnArgLysLeuGlyPheI 233121 : GATTTGGTGGACGCGAAAGGGCAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCA : 233180 259 : leValGlnHisHisValArgValLeuArgPheSerAla >>>> Target Intron : 271 |||||:!!||||||:!!|||..!||||||!:!! !:!! 1315 bp leValGluHisHisLeuArgThrLeuArgTyrLeuSer++ 233181 : TCGTGGAGCATCATTTGCGTACATTAAGGTATTTGTCTgt.................. : 233221 272 : 1 >>>> AsnIleGluAspThrLeuArgGluIleCysLeuValGluPheValGlyT : 287 |||||||||:!!..!:!!!.! !|||||||||||||||!!.|||||| -+AsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuValGlyC 233222 : .......ggAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGAT : 234582 288 : hrThrLeuIleMetCysLeuIleGluTyrSerLeuIleThrGluTrpAsnAsnSerAs : 306 !||||||! !||||||:!!:!!||||||! !|||:!!|||! ! ! !...::: ysThrLeuAsnMetCysMetLeuGluTyrTyrLeuLeuThrValArgPheThrAsnLy 234583 : GCACGTTGAACATGTGCATGCTCGAGTATTATTTACTCACGGTACGTTTTactaataa : 234639 307 : pSerIleAlaIleLeuThrTyrPhePheLeuPheValSer{Ph} >>>> Target : 320 ::: ||| ::: ||| ::: !!{ } 18 sIleLeuArgIle***SerAsn***PheLysTyrPheArg{Ly}++ 234640 : aattcttcgaatttaatcaaactaatttaaatactttaGA{AA}gt............ : 234685 321 : Intron 2 >>>> {e}AlaPheAsnIlePheMetPheCysHisIleGlyGluLeuL : 334 0 bp { }.!!||||||||||||:::||||||:!!||||||||| !| +-{s}ThrPheAsnIlePheIlePheCysTyrIleGlyGluThrL 234686 : .............at{G}ACATTtaatatattcatattttgttACATCGGAGAGACGC : 234903 335 : euThrGluGlnCysIleLys{V} >>>> Target Intron 3 >>>> {al}Gl : 342 ||||||||||| !..!{ } 74 bp {!!}|| euThrGluGlnValGlySer{P}+- ++{he}Gl 234904 : TTACAGAGCAGGTAGGATCA{T}ga.........................ag{TC}GG : 235001 343 : yTyrThrSerTyrLysIleGluTrpTyrGluLeuProGlyLysAlaAlaLeuAspLeu : 361 | ! ! ! !|||! !! !|||||||||..!|||||| !|||.!!||||||! !||| yGluLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeu 235002 : AGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTG : 235058 362 : MetPheMetIleThrMetSerArgHisProValGlnIleThrAlaGlyLysLeuIleS : 381 :!:.!.!!:|||:!!! !|||!!! !:!!:!!|||||||||||||||!!!:!!. ValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheLeuG 235059 : GTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTAC : 235118 382 : erLeuSerPheThrAsnPheGlyAsnVal : 390 .!:!!||| !!.!!!..||||||:!!||| lnMetSerValAlaThrPheGlyAspVal 235119 : AAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: CbirOr32 9 390 . KQ414889.1 232429 235147 + 459 M 29 87 G 1 0 M 128 384 G 0 9 M 103 309 5 0 2 I 0 1311 3 0 2 M 49 147 S 0 2 5 0 2 I 0 176 3 0 2 S 1 1 M 20 60 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232430 235147 459 + . gene_id 4 ; sequence CbirOr32 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232430 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232430 233218 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233219 233220 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233219 234533 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234532 234533 . + . intron_id 0 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 234534 234682 . + . KQ414889.1 exonerate:protein2genome:local exon 234534 234682 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234683 234684 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234683 234862 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234861 234862 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 234863 234924 . + . KQ414889.1 exonerate:protein2genome:local exon 234863 234924 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234925 234926 . + . intron_id 3 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 234925 234998 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 234997 234998 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234999 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234999 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232430 235147 459 + . alignment_id 4 ; Query CbirOr32 ; Align 232430 10 87 ; Align 232517 40 384 ; Align 232910 168 309 ; Align 234534 271 147 ; Align 234864 321 60 ; Align 235001 342 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 459 Query range: 16 -> 400 Target range: 278567 -> 280465 17 : AspIleValAsnThrLeuIleTrpAsnArgTrpLeuLeuArgValLeuGlyIleTrpP : 36 ||| :!! !!!:!:!! !|||||||||!!!|||!:! !:!!|||:!!|||| AspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpP 278568 : GATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGC : 278625 37 : roLeuValTyrProAsnThrThrLysIleGluLysIleIleAlaMetPheSerPheVa : 55 ||||| ! ! ! |||||| ! !:!!! ! ! !!.!:!:.!!:!!!!.:! roLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIl 278626 : CTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAAT : 278682 56 : lLeuCysTrpIleValLeuSerLeuPheLeuValLeuThrSerIleTyrThrPheSer : 74 ! !|||!:::!::!! !! !|||!!.:!! !! !.!! ! ! ..!.!!..! eSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAsp 278683 : CAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGAC : 278739 75 : GluArgSerIleMetArgGluLysMetLysMetLeuGlyProLeuGlyTyrValPheP : 94 :!!! !.!! !:!: ! !|||!!:||||||:!!|||||||||.!!!:! ! . LysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrM 278740 : AAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGA : 278799 95 : heSerMetLeuLysTyrPhePheLeuValAlaArgHisLysSerIleArgGlnCysVa : 113 !.:!!! !:!!||||||!:!.!!|||:!!:!!||| ! !.!||| !!:!!||||| etAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysVa 278800 : TGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGT : 278856 114 : lGlnValLeuSerAlaAspTrpArg<-><-><->ArgValGluGluAspAspHisArg : 129 |.!.! !:!! !!.!!|||||| ! ! !...:::::::::...||| lAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArg 278857 : GAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagaga : 278913 130 : GluIleMetMetArgGlyAlaGluLysGlyHisLeuLeuSerLysPheCysIleAlaP : 149 |||||||||! ! !.!!|||..!! |||!..! !|||:!!! ||| !! !!.!| GluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyP 278914 : gagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTT : 278973 150 : heMetTyrCysGlyGlyLeuSerTyrAsnThrIleMetProPheLeuSerGlnThrSe : 168 ||||||||! !||||||:!!! !|||!.!.!!:!:||||||!!.!!!:!! ! !!! heMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgTh 278974 : TCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCAC : 279030 169 : rGlu<-><->GlnAsnValThrValArgProMetAlaTyrLeuGlyPheAspIleLeu : 185 !||| .!.|||! !||||||||| !!...|||!:!! ! !!:! ! !||| rGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeu 279031 : GGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTC : 279087 186 : PheAsnLeuGlnLeuMetProValTyrValPheAlaPheCysLeuGlnCysValThrG : 205 .!!:!!! !!:: !! ||| !!:!! !.!!!.! ! !:!!||||||:!!.!!! LeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaA 279088 : CTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCG : 279147 206 : lyIleValMetPheAsnIleThrThrValValCysCysLeuAlaAlaMetPheValAl : 224 .!.!!|||:!:!:!::::!!|||..!! !!.!||| !!||| !|||:!!|||||| laPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMe 279148 : CGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCAT : 279204 225 : aHisAlaCysGlyGlnValAspIleValLeuAlaArgValLysSerLeuValLysGly : 243 !|||!.!||||||||| !! |||:!!:!!.!!!:!:!! ! !.!|||:!! ! ||| tHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGly 279205 : GCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGA : 279261 244 : GluLys<-><->ArgAsnArgValGlnPheGluGlnCysMetAlaIleIleValGlnH : 261 ! !||| !:!!:! ! ! ! !|||||| ! :!!!.! !|||:!!:!!| ValLysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluH 279262 : GTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGC : 279321 262 : isHisValArgValLeu{Ar} >>>> Target Intron 1 >>>> {g}PheSe : 269 |||||:!!!:!:!!|||{ !} 571 bp {!}|||! isHisLeuLysIleLeu{Gl}++ ++{y}PheIl 279322 : ATCATCTGAAGATACTG{GG}gt.........................ag{T}TTTAT : 279916 270 : rAlaAsnIleGluAspThrLeuArgGluIleCysLeuValGluPheValGlyThrThr : 288 !:!!.!.||||||! !|||!.!|||||||||!!!|||||| ! :!!||| !||| eSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThr 279917 : ATCGCAAATCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACG : 279973 289 : LeuIleMetCysLeuIleGluTyrSerLeuIleThrGluTrpAsnAsnSerAspSerI : 308 |||! !!!:|||!!!:!: !|||! !|||:!!|||! ! .!.!..!!! !! !| LeuAsnIleCysPheLeuThrTyrTyrLeuLeuThrValThrGluThrThrTyrValI 279974 : TTGAACATATGCTTTTTGACATATTATTTACTCACGGTAACAGAGACGACTTATGTTA : 280033 309 : leAlaIle{Le} >>>> Target Intron 2 >>>> {u}ThrTyrPhePheLe : 316 ||:!!|||{||} 154 bp {|}||| ...||| leSerIle{Le}++ -+{u}ThrGlyIlePheHi 280034 : TTTCCATA{TT}gt.........................cg{A}ACaggtatttttca : 280211 317 : uPheValSerPheAlaPheAsnIlePheMetPheCysHisIleGlyGluLeuLeuThr : 335 ||| ::: ! !!!. ! ! !.!!! .!.! ! ! ! !!!!..! sPhePheAsnAspLeuLeuLeu***SerGluIleSerGluThrPheIleSerPheVal 280212 : tttcttcaacGATCTATTATTGTGAAGCGAGATTTCAGAGACATTTATAAGCTTCGTT : 280268 336 : GluGlnCysIleLysValGlyTyrThrSerTyrLysIleGluTrpTyrGluLeuProG : 355 ..! !!|||:!!||||||||| :!!!!!|||! !|||!!:||||||...||||||| Ser***CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProG 280269 : TCATAGTGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAG : 280328 356 : lyLysAlaAlaLeuAspLeuMetPheMetIleThrMetSerArgHisProValGlnIl : 374 ||||| !|||! !! !|||!!:.!.!!:.!!.!!:!!|||!.! ! !!:!!:!!:! lyLysLysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLe 280329 : GGAAGAAAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATT : 280385 375 : eThrAlaGlyLysLeuIleSerLeuSerPheThrAsnPheGlyAsnValLeuLysThr : 393 !||||||||||||:!!|||..!||||||!!.!:!!:!||| !!!:!||| !! ! ! uThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIle 280386 : AACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATA : 280442 394 : SerValAlaTyrMetAsnLeu : 400 !:!:!!:!!||| :!!||| AsnLeuSerTyrTyrHisLeu 280443 : AATTTATCCTATTATCATTTG : 280465 vulgar: CbirOr32 16 400 . KQ414889.1 278567 280465 + 459 M 105 315 G 0 9 M 48 144 G 0 6 M 76 228 G 0 6 M 21 63 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 43 129 S 0 2 5 0 2 I 0 150 3 0 2 S 1 1 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278568 280465 459 + . gene_id 5 ; sequence CbirOr32 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278568 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278568 279340 . + . insertions 21 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280043 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280043 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280044 280045 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280044 280197 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280196 280197 . + . intron_id 1 ; splice_site "CG" KQ414889.1 exonerate:protein2genome:local cds 280198 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280198 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278568 280465 459 + . alignment_id 5 ; Query CbirOr32 ; Align 278568 17 315 ; Align 278892 122 144 ; Align 279042 170 228 ; Align 279276 246 63 ; Align 279913 268 129 ; Align 280199 312 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 350 Query range: 7 -> 267 Target range: 217138 -> 217924 8 : ProTrpSerAsnValAsnCysGluGlyAspIleValAsnThrLeuIleTrpAsnArgT : 27 ||| ! !!!:!! !.!. ||| :::||| ::!:!! !|||||||||| ProArgThrAspTyrGluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgT 217139 : CCCAGAACCGACTACGAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTT : 217196 28 : rpLeuLeuArgValLeuGlyIleTrpProLeuValTyrProAsnThrThrLysIleGl : 46 ||||||||!:! !:!!|||:!!|||||| !! ! !!.!||||||!:! !.. rpLeuLeuLysProMetGlyLeuTrpPro---AsnSerArgThrThrThrArgSerAr 217197 : GGTTGTTGAAACCGATGGGTCTTTGGCCA---AACTCACGTACCACCACCAGATCCCG : 217250 47 : uLysIleIleAlaMetPheSerPheValLeuCysTrpIleValLeuSerLeuPheLeu : 65 !||||||:!! !! .!.! ! !!.!||||||!:: !:!!:!!|||!!!.!.!!! gLysIleLeuTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPhe 217251 : AAAAATCCTCTACAAACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTC : 217307 66 : ValLeuThrSerIleTyrThrPheSerGluArgSerIleMetArgGluLysMetLysM : 85 |||! ! !|||!!:|||..!||| !||| !..! !:!: !!!:|||:!!|||: ValProCysSerMetTyrValPheLeuGluValGluAspLeuTyrAspLysLeuLysL 217308 : GTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAAC : 217367 86 : etLeuGlyProLeuGlyTyrValPhePheSerMetLeuLysTyrPhePheLeuValAl : 104 !!!!!||||||||| !!:! ! ! .!.:!!.!.:!!||||||!:!! !|||:!!!. euPheGlyProLeuIlePheCysValMetAlaPheValLysTyrTyrSerLeuIleVa 217368 : TGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGT : 217424 105 : aArgHisLysSerIleArgGlnCysValGlnValLeuSerAlaAspTrpArgArgVal : 123 !!.! ! !..!||||||:!!||||||::! !:!!..! !|||||||||!.!||| lHisLysAlaAspIleArgGluCysValArgArgIleGluArgAspTrpArgAsnVal 217425 : TCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTC : 217481 124 : GluGluAspAspHisArgGluIleMetMetArgGlyAlaGluLysGlyHisLeuLeuS : 143 ..! !!: ! !!|||||| |||!!: !..!|||.!. |||!.! !||| ArgCysGluLysAspArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuV 217482 : AGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGG : 217541 144 : erLysPheCysIleAlaPheMetTyrCysGlyGlyLeuSerTyrAsnThrIleMetPr : 162 ! !.!!|||! ! !||||||||| !!||| ::: ||| ! !!!:|| alLeuLeuCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAlaIlePr 217542 : TCCTACTCTGTACCTTCTTCATGTACAGCggtttcgttttttattacatCGCTATACC : 217598 163 : oPhe<-><-><->LeuSerGlnThrSerGluGlnAsnValThrValArgProMetAla : 178 |.!! !! !! !:!!..!.!. !|||:!!||| !!! !|||:!!!.! oIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeuVal 217599 : GATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTG : 217655 179 : TyrLeuGlyPheAspIleLeuPheAsnLeuGlnLeuMetProValTyrValPheAlaP : 198 !:!! ! ! ! !:!!.!!:!! !!::! !! |||..! !!! !.!!!.!| PheProPheThrLysTyrIleIleAspThrArgTyrThrProThrAsnGluIleValP 217656 : TTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGT : 217715 199 : heCysLeuGlnCysValThrGlyIleValMetPheAsnIleThrThrValValCysCy : 217 ||! !||||||! :!!.!!||| !:!!||| !...||||||:!!!.!!.!||| ! hePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSe 217716 : TTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAG : 217772 218 : sLeuAlaAlaMetPheValAlaHisAlaCysGlyGlnValAspIleValLeuAlaArg : 236 !||||||||| |||!.!!.!|||||||||||||||:!!!!::!::!!:!! ! !! rLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGluValLeuMetAsnTrp 217773 : TTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGG : 217829 237 : ValLysSerLeuValLysGlyGluLysArgAsnArgValGlnPheGluGlnCysMetA : 256 :!!:!! !|||:!! ! |||..! ! !! !!!! ! ! !!: ! !!:| LeuGlnHisLeuIleAspGlyArgAlaAspMetSerAspThrValAspGlyArgIleA 217830 : CTGCAACATTTAATCGACGGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCG : 217889 257 : laIleIleValGlnHisHisValArgValLeuArg : 267 ||! !||||||...!!.|||||||||:!!|||!:! laSerIleValSerGlnHisValArgIleLeuLys 217890 : CGAGCATCGTCAGTCAACACGTTCGGATATTAAAG : 217924 vulgar: CbirOr32 7 267 . KQ414889.1 217138 217924 + 350 M 29 87 G 1 0 M 126 378 G 0 9 M 104 312 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217139 217924 350 + . gene_id 6 ; sequence CbirOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217139 217924 . + . KQ414889.1 exonerate:protein2genome:local exon 217139 217924 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217139 217924 350 + . alignment_id 6 ; Query CbirOr32 ; Align 217139 8 87 ; Align 217226 38 378 ; Align 217613 164 312 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 346 Query range: 167 -> 403 Target range: 300180 -> 302157 168 : SerGluGlnAsnValThrValArgProMetAlaTyrLeuGlyPheAspIleLeuPheA : 187 !.!..!:!!||| !||| !!:!|||:!:||||||! !|||!:!||| !!!.!!: LysArgGluAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleA 300181 : AAAAGGGAGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCG : 300238 188 : snLeuGlnLeuMetProValTyrValPheAlaPheCysLeuGlnCysValThrGlyIl : 206 !! !||| !! |||..!|||! ......||| ......||| !!.!!!.!!! spThrGlnThrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMe 300239 : ATACACAAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGAT : 300295 207 : eValMetPheAsnIleThrThrValValCysCysLeuAlaAlaMetPheValAlaHis : 225 ::!!|||!:!|||:!:||||||!.!!.!! ! !!|||||||||!!:||||||.!!||| tIleMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHis 300296 : GATCATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCAT : 300352 226 : AlaCysGlyGlnValAspIleValLeuAlaArgValLysSerLeuValLysGlyGluL : 245 !|||||||||:!!.!.||| !:!!||||||:!!:!!..!||||||:!! !! ! IleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrG 300353 : ATCTGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGG : 300412 246 : ysArgAsnArgValGlnPheGluGlnCysMetAlaIleIleValGlnHis >>>> T : 262 !..!!!. !! ! !!!:! ! :!:!.!|||:!! !.!.||| lyGluLysAspAspGlyProAspProLeuValValIleValArgAspHis++ 300413 : GAGAGAAGGACGACGGTCCTGATCCTTTGGTCGTTATCGTTCGAGATCACgt...... : 300465 263 : arget Intron 1 >>>> HisValArgVal<->LeuArgPheSerAlaAsnIleG : 273 134 bp ||||||!.!! ! ! !||||||:!! !|||:!!| ++HisValHisGluAsnCysArgPheAlaLysAsnValG 300466 : ...................agCATGTGCACGAAAATTGCAGATTTGCAAAGAACGTTG : 300633 274 : luAspThrLeuArgGluIle{Cy} >>>> Target Intron 2 >>>> {s}Le : 281 ||!!:|||||||||!!:.!!{||} 970 bp {|} luGluThrLeuArgAspPhe{Cy}-+ -+{s}Al 300634 : AGGAAACTTTGCGTGACTTC{TG}ct.........................tg{C}gc : 301627 282 : uValGluPheValGlyThrThrLeuIleMetCysLeuIleGluTyrSerLeuIleThr : 300 ||| :::||||||! ! !!!:!!..! ! !! !.!! ! aValIleLysPheGluSerThrLeuAsnAlaLysPheLeuArgValIle***Phe*** 301628 : tgtaattaaatttgaatctACTTTAAATGCAAAGTTTTTACGAGTAATTTGATTTTAG : 301684 301 : GluTrpAsnAsnSerAspSerIleAlaIleLeuThrTyrPhePheLeuPheValSerP : 320 ||||||.!.|||||||||!!!||||||!!:||||||!:!||| !|||!!...!|||| GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerP 301685 : GAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGT : 301744 321 : heAlaPheAsnIlePheMetPheCysHisIleGlyGluLeuLeuThrGluGlnCysIl : 339 ||.!!||||||||||||!!:||||||:!!|||||||||:!!|||:!!|||||| :! heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGlnValLe 301745 : TCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGGTACT : 301801 340 : eLysValGlyTyrThrSerTyrLysIleGluTrpTyrGluLeu{P} >>>> Targe : 354 !! !.!! ::: ::: ...... !||| ! !{ } uThrTyrSerArgSerPheHisPhePheSerMetTyrPheHis{A}++ 301802 : TACTTACAGTAGAagtttccatttcttttcaatGTATTTCCAC{G}gt.......... : 301849 355 : t Intron 3 >>>> {ro}GlyLysAlaAlaLeuAspLeuMetPheMetIleThrM : 367 80 bp {!!}!.!||| !|||! !||||||!!:.!.:!:! !..!! +-{la}AlaLysArgAlaTyrAspLeuIleLeuLeuSerValI 301850 : ...............ac{CA}GCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGA : 301965 368 : etSerArgHisProValGlnIleThrAlaGlyLysLeuIleSerLeuSerPheThrAs : 386 !:|||!:!:!!||| !:!!:!!||||||||||||:!!|||..!||||||!!.!.!!. leSerGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnTh 301966 : TATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATAC : 302022 387 : nPheGlyAsn >>>> Target Intron 4 >>>> ValLeuLysThrSerValA : 396 .|||.!!::! 82 bp |||:!!||||||||||||! rPheSerSer++ ++ValValLysThrSerValV 302023 : ATTCAGCTCTgt.........................agGTGGTGAAAACATCGGTGG : 302134 397 : laTyrMetAsnLeuIleArgThr : 403 .!|||:!!||||||:!:|||||| alTyrLeuAsnLeuLeuArgThr 302135 : TGTACTTGAATTTACTGCGAACA : 302157 vulgar: CbirOr32 167 403 . KQ414889.1 300180 302157 + 346 M 94 282 5 0 2 I 0 130 3 0 2 M 4 12 G 0 3 M 14 42 S 0 2 5 0 2 I 0 966 3 0 2 S 1 1 M 73 219 S 0 1 5 0 2 I 0 76 3 0 2 S 1 2 M 35 105 5 0 2 I 0 78 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300181 302157 346 + . gene_id 7 ; sequence CbirOr32 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300181 300462 . + . KQ414889.1 exonerate:protein2genome:local exon 300181 300462 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300463 300464 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300463 300596 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300595 300596 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300597 300655 . + . KQ414889.1 exonerate:protein2genome:local exon 300597 300655 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300656 300657 . + . intron_id 2 ; splice_site "CT" KQ414889.1 exonerate:protein2genome:local intron 300656 301625 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301624 301625 . + . intron_id 1 ; splice_site "TG" KQ414889.1 exonerate:protein2genome:local cds 301626 301846 . + . KQ414889.1 exonerate:protein2genome:local exon 301626 301846 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301847 301848 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301847 301926 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 301925 301926 . + . intron_id 2 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 301927 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301927 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 3 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302157 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302157 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300181 302157 346 + . alignment_id 7 ; Query CbirOr32 ; Align 300181 168 282 ; Align 300597 262 12 ; Align 300612 266 42 ; Align 301627 281 219 ; Align 301929 355 105 ; Align 302116 390 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 344 Query range: 20 -> 337 Target range: 259775 -> 261844 21 : ThrLeuIleTrpAsnArgTrpLeuLeuArgValLeuGlyIleTrpProLeuValTyrP : 40 !:!||| !!::|||||||||!!!|||!:! !:!!||| !|||||| !! SerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpPro---ProSerS 259776 : AGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCA---CCTTCAT : 259830 41 : roAsnThrThrLysIleGluLysIleIleAlaMetPheSerPheValLeuCysTrpIl : 59 !!::!||||||!:!:!!||||||||||||:!!:!:.!! !.!! !!:!!|||!::! erSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSe 259831 : CCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAG : 259887 60 : eValLeuSerLeuPheLeuValLeuThrSerIleTyrThrPheSerGluArgSerIle : 78 !..!:!! !:!! !|||:!!! ! ! !:!!:!!! !.!. !|||!:!..!! ! rThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSer 259888 : TACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGT : 259944 79 : MetArgGluLysMetLysMetLeuGlyProLeuGlyTyrValPhePheSerMetLeuL : 98 :!! ! !|||! !|||:!!|||||||||||| !:!! !||| !!.!! :!!! LeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleA 259945 : TTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTA : 260004 99 : ysTyrPhePheLeuValAlaArgHisLysSerIleArgGlnCysValGlnValLeuSe : 117 !.||| |||:!! !||| !!:!..!|||! !...||||||:!! !:!!.. snTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGl 260005 : ATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGA : 260061 118 : rAlaAspTrpArgArgValGluGluAspAspHisArgGluIleMetMetArgGlyAla : 136 ! !|||||||||! !:!! !..!!!: ! !!!:!.!.:!:|||:!!||| !||| uAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAla 260062 : GAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCG : 260118 137 : GluLysGlyHisLeuLeuSerLysPheCysIleAlaPheMetTyrCysGlyGlyLeuS : 156 :!! |||...! !:!!:!! ! !||| ||||||:!! ! !!|||! !|||! LysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuC 260119 : AAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGT : 260178 157 : erTyr<-><-><->AsnThrIleMetProPheLeuSerGlnThrSerGluGlnAsnVa : 172 !!!:! !....!:!:! !! :!!! !|||..!.!!.!.:!!!.. ysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrAr 260179 : GCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAG : 260235 173 : lThrValArgProMetAlaTyrLeuGlyPheAspIleLeuPheAsnLeuGlnLeuMet : 191 !! !|||!.!! !:!! !!! ! !! !!:! ! |||.!.|||:!!.!. !! gIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSer 260236 : GATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGT : 260292 192 : ProValTyrValPheAlaPheCysLeuGlnCysValThrGlyIleValMetPheAsnI : 211 |||:!! !!! !.!!!.!.!! !:!!|||! !|||:!!|||.!!:!!:!! !:::! ProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerS 260293 : CCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGA : 260352 212 : leThrThrValValCysCysLeuAlaAlaMetPheValAlaHisAlaCysGlyGlnVa : 230 !|||..!! !:!!! ! !!|||||||||:!:.!...!||||||||||||||||||:! erThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLe 260353 : GCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTT : 260409 231 : lAspIleValLeuAlaArgValLysSerLeuVal<->LysGlyGluLysArgAsnArg : 248 !:!!:!::!!:!!! ! !!:!!! !..!!!!||| :!!..!..!!!.|||!!.!:! uAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLys 260410 : GAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAA : 260466 249 : ValGlnPheGluGlnCysMetAlaIleIleValGlnHisHisValArgValLeuArgP : 268 ! ! :!! !!:!.!:!:||||||:!!||||||:!!|||!.!|||! !! LysAlaProPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeuThr* 260467 : AAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTCACGT : 260526 269 : heSerAlaAsnIleGluAspThrLeuArgGluIleCysLeuValGluPheValGlyTh : 287 ..! ! ! ! ! !:!!||| !!! !!!!:!! ||||||:! **AspLeuPheAspIleThrPheValArg***ArgIlePheIleIleThrValGlySe 260527 : AAGATTTGTTTGATATTACTTTTGTACGATAAAGGATTTTTATAATTACGGTAGGATC : 260583 288 : rThrLeuIleMetCysLeu{Il} >>>> Target Intron 1 >>>> {e}Glu : 295 !|||:::||| |||{||} 1109 bp {|} rThrIleIle***LysLeu{Il}++ -+{e}Tyr 260584 : Tactataatttgaaaatta{at}gt.........................tg{a}tat : 261716 296 : TyrSerLeuIleThrGluTrpAsnAsnSerAspSerIleAlaIleLeuThrTyrPheP : 315 ::: |||::: |||||| !.!...!|||! ! ! !:!:! !|||||||||. PhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheM 261717 : ttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCA : 261776 316 : heLeuPheValSerPheAlaPheAsnIlePheMetPheCysHisIleGlyGluLeuLe : 334 !.:!!.!.:!!:!!.!!..!||||||:!!|||!!:.!!|||:!!|||||||||:!!|| etMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLe 261777 : TGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACT : 261833 335 : uThrGluGln : 337 |||||||||| uThrGluGln 261834 : AACGGAACAG : 261844 vulgar: CbirOr32 20 337 . KQ414889.1 259775 261844 + 344 M 16 48 G 1 0 M 120 360 G 0 9 M 84 252 G 0 3 M 52 156 S 0 2 5 0 2 I 0 1105 3 0 2 S 1 1 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259776 261844 344 + . gene_id 8 ; sequence CbirOr32 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259776 260605 . + . KQ414889.1 exonerate:protein2genome:local exon 259776 260605 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 260606 260607 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 260606 261714 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261713 261714 . + . intron_id 0 ; splice_site "tg" KQ414889.1 exonerate:protein2genome:local cds 261715 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261715 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259776 261844 344 + . alignment_id 8 ; Query CbirOr32 ; Align 259776 21 48 ; Align 259824 38 360 ; Align 260193 158 252 ; Align 260448 242 156 ; Align 261716 295 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 342 Query range: 24 -> 268 Target range: 221393 -> 222131 25 : AsnArgTrpLeuLeuArgValLeuGlyIleTrpProLeuValTyrProAsnThrThrL : 44 !:!||||||:!!|||!:! !:!!|||:!!|||||| !! !!|||! !:!!! SerArgTrpIleLeuLysProIleGlyValTrpPro---AsnSerAlaAsnIleSerT 221394 : AGCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCA---AATTCAGCCAACATTTCCA : 221448 45 : ysIleGluLysIleIleAlaMetPheSerPheValLeuCysTrpIleValLeuSerLe : 63 !:!!|||!:! !:!! ! !.!.! ! !|||:!!|||!::! !:!!:!!!!!!! hrValGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLeuIleThrPh 221449 : CGGTAGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTT : 221505 64 : uPheLeuValLeuThrSerIleTyrThrPheSerGluArgSerIleMetArgGluLys : 82 !.!!||||||! ! !|||:!!|||..!.!! !||| !..! !:!: !.!.!:! eLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspValTyrAsnArg 221506 : CCTCTTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGA : 221562 83 : MetLysMetLeuGlyProLeuGlyTyrValPhePheSerMetLeuLysTyrPhePheL : 102 !!:|||:!!||||||||||||.!!!:! ! ! .!.:!!.!.||||||||| !.!.| IleLysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuL 221563 : ATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGT : 221622 103 : euValAlaArgHisLysSerIleArgGlnCysValGlnValLeuSerAlaAspTrpAr : 121 ||:!! ! !.!.!!...!||||||:!!|||:!!:!! !:!!..! !||||||!: euIleLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTrpAspTrpLy 221623 : TGATACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAA : 221679 122 : gArgValGluGluAspAspHisArgGluIleMetMetArgGlyAlaGluLysGlyHis : 140 !!.!:!! ! ..! ! !!!:!!!:||||||!!:..!..!||| |||... sAsnIleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIlePheGlyArg 221680 : GAATATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGG : 221736 141 : LeuLeuSerLysPheCysIleAlaPheMetTyrCysGlyGlyLeuSerTyrAsnThrI : 160 ! !|||! !! !.!!|||! ! !||||||||| !!||| ::: ||| ! ArgLeuIleMetIleCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleA 221737 : CGATTGATCATGATCTGCACATTTTTCATGTACAGTggtttcgttttttattacatAG : 221796 161 : leMetProPhe<-><-><->LeuSerGlnThrSerGluGlnAsnValThrValArgPr : 176 !!!:|||||| !! !! .!!..!!!: ||||||||| || laIleProPheSerValGlyLysIleProAlaGlnAspValAsnValThrPheIlePr 221797 : CCATACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCC : 221853 177 : oMetAlaTyrLeuGlyPheAspIleLeuPheAsnLeuGlnLeuMetProValTyrVal : 195 ||||!.!!:!! ! !! .!!:!! !!:!! !!:!! !! |||||| !!! ! oMetValPheProPheSerArgPheIleValAspThrArgTyrSerProValAsnGlu 221854 : AATGGTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAG : 221910 196 : PheAlaPheCysLeuGlnCysValThrGlyIleValMetPheAsnIleThrThrValV : 215 .!! !|||! |||||| !:!!.!!||| !:!!||| !!:!||||||:!!!.!! IleLeuPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaA 221911 : ATTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAG : 221970 216 : alCysCysLeuAlaAlaMetPheValAlaHisAlaCysGlyGlnValAspIleValLe : 234 .!||| !!|||!.!|||||||||!.!!.!|||||||||||||||:!!.!.:!::!!:! laCysSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMe 221971 : CTTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGAT : 222027 235 : uAlaArgValLysSerLeuValLysGlyGluLysArgAsnArgValGlnPheGluGln : 253 !::! !!:!!||| !|||:!!!!.|||..! ! !! !! !.!. ! !!:::! tSerTrpLeuLysHisLeuIleAsnGlyArgAlaAspMetCysAsnAsnValAspArg 222028 : GAGCTGGCTGAAACATTTGATCAACGGCCGGGCGGATATGTGTAACAACGTGGATAGG : 222084 254 : CysMetAlaIleIleValGlnHisHisValArgValLeuArgPhe : 268 ! !!:|||! ||||||.!.!!.|||||||||:!!|||!:!!:! ArgIleAlaLysIleValAsnGlnHisValArgIleLeuGlnTyr 222085 : AGAATAGCGAAGATTGTGAATCAACACGTTCGAATATTGCAGTAT : 222131 vulgar: CbirOr32 24 268 . KQ414889.1 221393 222131 + 342 M 12 36 G 1 0 M 126 378 G 0 9 M 105 315 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221394 222131 342 + . gene_id 9 ; sequence CbirOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221394 222131 . + . KQ414889.1 exonerate:protein2genome:local exon 221394 222131 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221394 222131 342 + . alignment_id 9 ; Query CbirOr32 ; Align 221394 25 36 ; Align 221430 38 378 ; Align 221817 164 315 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 318 Query range: 20 -> 268 Target range: 212875 -> 213625 21 : ThrLeuIleTrpAsnArgTrpLeuLeuArgValLeuGlyIleTrpProLeuValTyrP : 40 :::::: ||||||||||||||||||!:! ! !|||:!:|||||| ! ! ! SerIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpPro---AspLysS 212876 : agtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCC---GACAAGT : 212930 41 : roAsnThrThrLysIleGluLysIleIleAlaMetPheSerPheValLeuCysTrpIl : 59 !! !!..!:!! !|||||||||! !|||||| !!. ! !..!:!!|||!:: erTyrValSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTyrGl 212931 : CCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGG : 212987 60 : eValLeuSerLeuPheLeuValLeuThrSerIleTyrThrPheSerGluArgSerIle : 78 !:!!:!!.!!! !.!!:!!:!!! ! !|||:!:|||..!||| !!!: !... yLeuIleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGluAsn 212988 : TTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaat : 213044 79 : MetArgGluLysMetLysMetLeuGlyProLeuGlyTyrValPhePheSerMetLeuL : 98 ::: :::::::!::!!:!!!!!||| !!!!!.!!:! ! ! !:!!:!!! !| IlePheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTrpL 213045 : atatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGA : 213104 99 : ysTyrPhePheLeuValAlaArgHisLysSerIleArgGlnCysValGlnValLeuSe : 117 ||||| !! |||:!! !!.! ! ! ..!|||||| !||||||:!! !:!!!. ysTyrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMetLy 213105 : AGTATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAA : 213161 118 : rAlaAspTrpArgArgValGluGluAspAspHisArgGluIleMetMetArgGlyAla : 136 ! !||||||!:!!.!:!! !.!.!!:!!: !!!:!||||||||| ! !..!||| sTyrAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsnAla 213162 : ATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCG : 213218 137 : GluLysGlyHisLeuLeuSerLysPheCysIleAlaPheMetTyrCysGlyGlyLeuS : 156 ... ||| ! !:!! !! !.!!||| ! !||||||||| ||| ! !! SerPheGlyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheThrP 213219 : AGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGT : 213278 157 : erTyrAsnThrIleMetProPheLeuSerGln<-><-><->ThrSerGluGlnAsnVa : 172 !||| ! !:!!:!:|||.!! !:!!.!. .!!..!!!:! ||||| heTyrPheLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAsnVa 213279 : TTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGT : 213335 173 : lThrValArgProMetAlaTyrLeuGlyPheAspIleLeuPheAsnLeuGlnLeuMet : 191 |||| !!|||! !|||!.! !! !! !! .!!:!! !!:!!:!!!:!! !! lThrPheArgGlnMetValValProValSerArgPheIleValAspValArgTyrSer 213336 : GACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGT : 213392 192 : ProValTyrValPheAlaPheCysLeuGlnCysValThrGlyIleValMetPheAsnI : 211 |||||| !!! !.!. !|||! :!!||| !:!!.!!|||:!!:!!!!: ! !| ProValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaI 213393 : CCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTA : 213452 212 : leThrThrValValCysCysLeuAlaAlaMetPheValAlaHisAlaCysGlyGlnVa : 230 ||.!!..!|||!.!||| !!|||||||||:!!|||!.!!.!|||||||||||||||:! leAlaValValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMe 213453 : TTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGAT : 213509 231 : lAspIleValLeuAlaArgValLysSerLeuValLysGlyGluLysArgAsnArgVal : 249 !! !|||:!!:!!::! !!:!!:!! !|||:!! ! |||..!:!! !! !!! ! tGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGlyArgGluAspMetSerLys 213510 : GGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGCAAG : 213566 250 : GlnPheGluGlnCysMetAlaIleIleValGlnHisHisValArgValLeuArgPhe : 268 .!. ! !!:.!. ! !!:|||:!!||||||.!.!!.|||||||||:!!|||!:!!:: AsnValAspAspArgIleAlaValIleValAsnGlnHisValArgIleLeuLysTrp 213567 : AATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTGAAGTGG : 213625 vulgar: CbirOr32 20 268 . KQ414889.1 212875 213625 + 318 M 16 48 G 1 0 M 129 387 G 0 9 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212876 213625 318 + . gene_id 10 ; sequence CbirOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212876 213625 . + . KQ414889.1 exonerate:protein2genome:local exon 212876 213625 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212876 213625 318 + . alignment_id 10 ; Query CbirOr32 ; Align 212876 21 48 ; Align 212924 38 387 ; Align 213320 167 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 313 Query range: 20 -> 267 Target range: 274386 -> 275136 21 : ThrLeuIleTrpAsnArgTrpLeuLeuArgValLeuGlyIleTrpProLeuValTyrP : 40 !:!||| !! !|||||||||!!!|||!:! !:!!||| |||||||||!.!! | SerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaSerP 274387 : AGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGC : 274444 41 : roAsnThrThrLysIleGluLysIleIleAlaMetPheSerPheValLeuCysTrpIl : 59 || |||||||||.!!|||::!|||:!!:!! ... ... ||||||::: ro---ThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCy 274445 : CC---ACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTG : 274498 60 : eValLeuSerLeuPheLeuValLeuThrSerIleTyrThrPheSerGluArgSerIle : 78 ! !!:!! !! ! !:!!:!!! !!:!! !.!!:!!! !.!. !! ! !..!! ! sPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGluSer 274499 : CTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGT : 274555 79 : MetArgGluLysMetLysMetLeuGlyProLeuGlyTyrValPhePheSerMetLeuL : 98 :!:!.! !|||:!!|||:!!|||||||||||||||:!! !|||.!!.!! :!!! LeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleA 274556 : CTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTA : 274615 99 : ysTyrPhePheLeuValAlaArgHisLysSerIleArgGlnCysValGlnValLeuSe : 117 !.||| ! |||:!! !||| !|||..!|||||| ||||||:!! !:!!.. snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 274616 : ATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCA : 274672 118 : rAlaAspTrpArgArgValGluGluAspAspHisArgGluIleMetMetArgGlyAla : 136 !.!!|||||||||! !||| ..! !!: !!!:!:!!:!:|||:!!!:!..!||| nThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsnAla 274673 : AACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCG : 274729 137 : GluLysGlyHisLeuLeuSerLysPheCysIleAlaPheMetTyrCysGlyGlyLeuS : 156 :!!! |||!.!! !:!!:!!! |||||| ||||||||| ! ||||||! !|||! LysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuC 274730 : AAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCT : 274789 157 : erTyrAsnThrIleMetProPheLeuSerGlnThr<-><-><->SerGluGlnAsnVa : 172 !!||| !..!|||! !!||| !! !|||||| .!!.!.:!!!.! ysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrAr 274790 : GTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAG : 274846 173 : lThrValArgProMetAlaTyrLeuGlyPheAspIleLeuPheAsnLeuGlnLeuMet : 191 !||||||!.! !:!! !!! ! !!.!!:! ! ! :!! !! :!!.!. !! gThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThrSer 274847 : AACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGT : 274903 192 : ProValTyrValPheAlaPheCysLeuGlnCysValThrGlyIleValMetPheAsnI : 211 |||..! !!! !.!!!.!.!!..!! !|||! !|||:!!|||.!!:!!:!! !:::! ProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerS 274904 : CCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGA : 274963 212 : leThrThrValValCysCysLeuAlaAlaMetPheValAlaHisAlaCysGlyGlnVa : 230 !.!!..!! !!.!! ! !!|||||||||:!!|||!.!|||||||||! !||||||:! erAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLe 274964 : GCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTT : 275020 231 : lAspIleValLeuAlaArgValLysSerLeuValLysGlyGluLys<->ArgAsnArg : 248 !..!:!::!!:!! ! !!:!!! ..!!!!|||!!. !...!:! :::|||::: uSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGlnAsnLys 275021 : GAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaa : 275077 249 : ValGlnPheGluGlnCysMetAlaIleIleValGlnHisHisValArgValLeuArg : 267 ::: ... !!:!.!:!::!!|||:!!||||||:!!|||||||||||| AsnValTyrPheSerGluIleGlyValValValGluHisHisLeuArgValLeuArg 275078 : aatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTACTCAGG : 275136 vulgar: CbirOr32 20 267 . KQ414889.1 274386 275136 + 313 M 20 60 G 1 0 M 126 378 G 0 9 M 78 234 G 0 3 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274387 275136 313 + . gene_id 11 ; sequence CbirOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274387 275136 . + . KQ414889.1 exonerate:protein2genome:local exon 274387 275136 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 274387 275136 313 + . alignment_id 11 ; Query CbirOr32 ; Align 274387 21 60 ; Align 274447 42 378 ; Align 274834 168 234 ; Align 275071 246 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 307 Query range: 20 -> 267 Target range: 266640 -> 267390 21 : ThrLeuIleTrpAsnArgTrpLeuLeuArgValLeuGlyIleTrpProLeuValTyrP : 40 !:!||| !! !|||||||||!!!|||!:! !:!!||| !||||||! !:!! SerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeu---S 266641 : AGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTG---T : 266695 41 : roAsnThrThrLysIleGluLysIleIleAlaMetPheSerPheValLeuCysTrpIl : 59 !! !|||:!!|||:!!|||::!|||:!!:!! !! !.!!|||:!!|||!:: erLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCy 266696 : CACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTG : 266752 60 : eValLeuSerLeuPheLeuValLeuThrSerIleTyrThrPheSerGluArgSerIle : 78 ! !:!! !!!! !:!!:!!! ! !! !.!!:!! ! !! !||| !..!! ! sSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSer 266753 : CTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGT : 266809 79 : MetArgGluLysMetLysMetLeuGlyProLeuGlyTyrValPhePheSerMetLeuL : 98 !!:||| !|||:!!|||:!!!!!|||||||||.!!:!! !||| !!.!! :!!! IleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleA 266810 : ATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTA : 266869 99 : ysTyrPhePheLeuValAlaArgHisLysSerIleArgGlnCysValGlnValLeuSe : 117 !.||| ! |||:!! !||| !|||..!|||||| ||||||:!! !:!!.. snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 266870 : ACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCA : 266926 118 : rAlaAspTrpArgArgValGluGluAspAspHisArgGluIleMetMetArgGlyAla : 136 !.!!|||||||||! !||| ..! !!: !!!:!:!!:!:|||:!!!:!..!||| nThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAla 266927 : AACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCG : 266983 137 : GluLysGlyHisLeuLeuSerLysPheCysIleAlaPheMetTyrCysGlyGlyLeuS : 156 ..!! |||!.!! !:!!:!!! !|||||| ||||||||| ! ||||||! !|||. ArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuG 266984 : AGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCG : 267043 157 : erTyrAsnThrIleMetProPheLeuSerGlnThrSerGluGlnAsnValThrValAr : 175 !!||| !..!|||! ! !!||| !! !|||||| !||| ..! ! !..!|| lyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrAr 267044 : GCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAG : 267100 176 : gProMetAlaTyrLeuGly<-><-><->PheAspIleLeuPheAsnLeuGlnLeuMet : 191 | !:!: ! ||| ! !:! ! ! :!!.!! :!!.!. !! gIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSer 267101 : GATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGC : 267157 192 : ProValTyrValPheAlaPheCysLeuGlnCysValThrGlyIleValMetPheAsnI : 211 |||..! !!! !.!!!.!.!! !! !|||! !|||:!!|||.!!:!!:!! !:::! ProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerS 267158 : CCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGA : 267217 212 : leThrThrValValCysCysLeuAlaAlaMetPheValAlaHisAlaCysGlyGlnVa : 230 !..!..!! !!.!! ! !!|||||||||:!!|||!.!||||||||||||||||||:! erValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLe 267218 : GCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCT : 267274 231 : lAspIleValLeuAlaArgValLysSerLeuVal<->LysGlyGluLysArgAsnArg : 248 !..!:!::!!:!! ! !!:!!|||..!!!!||| ::!..!..! ! !!!|||!:! uSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLys 267275 : GAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAG : 267331 249 : ValGlnPheGluGlnCysMetAlaIleIleValGlnHisHisValArgValLeuArg : 267 ! ! ! .!. !!:!.!:!::!!|||:!!||||||:!!|||||||||||| AsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeuArg 267332 : AACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGAGG : 267390 vulgar: CbirOr32 20 267 . KQ414889.1 266640 267390 + 307 M 18 54 G 1 0 M 142 426 G 0 9 M 60 180 G 0 3 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266641 267390 307 + . gene_id 12 ; sequence CbirOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266641 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266641 267390 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 266641 267390 307 + . alignment_id 12 ; Query CbirOr32 ; Align 266641 21 54 ; Align 266695 40 426 ; Align 267130 182 180 ; Align 267313 242 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 299 Query range: 10 -> 267 Target range: 208185 -> 208962 11 : AsnValAsnCysGluGlyAspIleValAsnThrLeuIleTrpAsnArgTrpLeuLeuA : 30 ||| !|||! !:!!..!|||:!: ! !!.!:!! ! !||| !||| !|||! AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 31 : rgValLeuGlyIleTrpProLeuValTyrProAsnThrThrLysIleGluLysIleIl : 49 :!:!!:!!||| !|||||| ! ! :!! !:!! !:!!|||!!.! ! ysIleIleGlySerTrpProArgSerIle---AspArgSerTrpLeuGluAsnSerGl 208244 : AGATAATCGGCTCCTGGCCGAGATCTATA---GATCGTTCCTGGTTAGAGAACAGCCA : 208297 50 : eAlaMetPheSerPheValLeuCysTrpIleValLeuSerLeuPheLeuValLeuThr : 68 !!!:.!!! ! !|||||| !! !:!!|||.!!!!!.!!:!!:!!! !||| nHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThr 208298 : GCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACC : 208354 69 : SerIleTyrThrPheSerGluArgSerIleMetArgGluLysMetLysMetLeuGlyP : 88 .!!!!:!:!.!!.!! !! ! !..! !.!. !!!::!!:!:|||!!:! !.!! GlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerA 208355 : GGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCG : 208414 89 : roLeuGlyTyrValPhePheSerMetLeuLysTyrPhePheLeuValAlaArgHisLy : 107 !!|||.!!!:! !!.!..!.:!!.!. !|||||| ! .!!:!!..!!.!|||.!. laLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGl 208415 : CTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGG : 208471 108 : sSerIleArgGlnCysValGlnValLeuSerAlaAspTrpArgArgValGluGluAsp : 126 ..!||||||:!!||||||:!! !:!!..!||||||||||||!.!||||||.!.!!: yAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGlu 208472 : TGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAG : 208528 127 : AspHisArgGluIleMetMetArgGlyAlaGluLysGlyHisLeuLeuSerLysPheC : 146 !!: !!|||:!!||||||:!! !..!|||... !.!... !|||! ! !.!.| GluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleC 208529 : GAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATAT : 208588 147 : ysIleAlaPheMetTyrCysGlyGlyLeuSerTyrAsnThrIleMetProPheLeu<- : 165 || !|||||||||||| ! ||| ::: ||| ! !:!!|||.!! ! ysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrAr 208589 : GCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCG : 208645 166 : >SerGlnThrSerGluGln<-><->AsnValThrValArgProMetAlaTyrLeuGly : 181 ..!:!!..! !|||:!! |||:!!||| !||| !:!!!.!|||! !! ! gAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProVal 208646 : AGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTT : 208702 182 : PheAspIleLeuPheAsnLeuGlnLeuMetProValTyrValPheAlaPheCysLeuG : 201 ! ! .!!:!!.!.:!!:!!!:!! !! |||||| !!! !.!! !!:! :!!| ProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValG 208703 : CCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTAC : 208762 202 : lnCysValThrGlyIleValMetPheAsnIleThrThrValValCysCysLeuAlaAl : 220 ||! :!!:!!|||.!!||| !|||||||||..!! !!.!||| !!|||||||| lnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAl 208763 : AATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGC : 208819 221 : aMetPheValAlaHisAlaCysGlyGlnValAspIleValLeuAlaArgValLysSer : 239 |:!!.!!!.! !|||||||||||||||:!!.!.|||:!!:!!:!! !!:!!:!!!.! aLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLys 208820 : GCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAG : 208876 240 : LeuValLysGlyGluLysArgAsnArgValGlnPheGluGlnCysMetAlaIleIleV : 259 |||||| ! |||..!:!! !.!...! !.!.!!.!!:||| ! :!!|||! !|||| LeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleV 208877 : TTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCG : 208936 260 : alGlnHisHisValArgValLeuArg : 267 ||:!!!!.||||||||||||:!!!:! alGluGlnHisValArgValIleLys 208937 : TGGAGCAGCATGTTCGAGTGATCAAG : 208962 vulgar: CbirOr32 10 267 . KQ414889.1 208185 208962 + 299 M 29 87 G 1 0 M 124 372 G 0 3 M 6 18 G 0 6 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 208962 299 + . gene_id 13 ; sequence CbirOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208186 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208962 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208186 208962 299 + . alignment_id 13 ; Query CbirOr32 ; Align 208186 11 87 ; Align 208273 41 372 ; Align 208648 165 18 ; Align 208672 171 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 270 Query range: 115 -> 267 Target range: 304413 -> 304869 116 : LeuSerAlaAspTrpArgArgValGluGluAspAspHisArgGluIleMetMetArgG : 135 ||||||.!!! !::..!!:!||||||... ! !!||||||!!:|||:!:!:! LeuSerThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysT 304414 : CTCTCTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAAT : 304471 136 : lyAlaGluLysGlyHisLeuLeuSerLysPheCysIleAlaPheMetTyrCysGlyGl : 154 !!.!:!!! !|||!.. !|||!!!! !.!!||| ! !||||||||| !||||| yrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGl 304472 : ACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGG : 304528 155 : yLeuSerTyrAsnThrIleMetProPheLeuSerGlnThr<-><->SerGluGlnAsn : 171 | !! !|||:!!|||:!!|||! !||| !!!! !||| ..!||| ! ||| yThrIleTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsn 304529 : CACCATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAAT : 304585 172 : ValThrValArgProMetAlaTyrLeuGlyPheAspIleLeuPheAsnLeuGlnLeuM : 191 !|||:!!!:!|||:!:!.!|||! ! !!:!..! !||||||:!!:!!||| !! ArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrS 304586 : CGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAA : 304645 192 : etProValTyrValPheAlaPheCysLeuGlnCysValThrGlyIleValMetPheAs : 210 |||:!!|||! !!!.!.!!:!! !:!!!!.|||:!! !||| !|||!!:!:!:: erProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSe 304646 : GCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTC : 304702 211 : nIleThrThrValValCysCysLeuAlaAlaMetPheValAlaHisAlaCysGlyGln : 229 !||||||.!!! !!.!||| ! |||||||||:!:|||!.!.!!||||||||||||||| rIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGln 304703 : TATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAA : 304759 230 : ValAspIleValLeuAlaArgValLysSerLeuValLysGlyGluLysArgAsnArgV : 249 :!!|||||||||:!!:!!|||:!! ..!||||||!!..!!:!!:!! !::! IleAspIleValMetSerArgLeuGlyAspLeuValAsnSerLysGluSerSer---- 304760 : ATTGATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCATCT---- : 304816 250 : alGlnPheGluGlnCysMetAlaIleIleValGlnHisHisValArgValLeuArg : 267 .!.!!.!!::!! ! :!: ! !||||||:!!||||||:!!|||:!!|||||| --AspLeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIleLeuArg 304817 : --GATTTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTAAGG : 304869 vulgar: CbirOr32 115 267 . KQ414889.1 304413 304869 + 270 M 52 156 G 0 6 M 80 240 G 2 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304414 304869 270 + . gene_id 14 ; sequence CbirOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304414 304869 . + . KQ414889.1 exonerate:protein2genome:local exon 304414 304869 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 304414 304869 270 + . alignment_id 14 ; Query CbirOr32 ; Align 304414 116 156 ; Align 304576 168 240 ; Align 304816 250 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 258 Query range: 14 -> 194 Target range: 294672 -> 295218 15 : GluGlyAspIleValAsnThrLeuIleTrpAsnArgTrpLeuLeuArgValLeuGlyI : 34 ..!..!|||:!:!.!|||!:!|||! !:: !||| !!||||||!:! !:!!|||: ArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyL 294673 : AGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTC : 294730 35 : leTrpProLeuValTyrProAsnThrThrLysIleGluLysIleIleAlaMetPheSe : 53 !!|||||||||:!!||| !:!!|||!:!|||:!:.!.|||:!!:!!:!!!!:.!! euTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLe 294731 : TTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCT : 294787 54 : rPheValLeuCysTrpIleValLeuSerLeuPheLeuValLeuThrSerIleTyrThr : 72 !.!!!.!! !||| !:!:..!:!! !!!! !!||||||! ! !.!! !!:! ! uIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCys 294788 : GATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGT : 294844 73 : PheSerGluArgSerIleMetArgGluLysMetLysMetLeuGlyProLeuGlyTyrV : 92 ! ! !.!. ... :::::: |||||||||:!:|||||||||:!! !||| ValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrS 294845 : GTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACT : 294904 93 : alPhePheSerMetLeuLysTyrPhePheLeuValAlaArgHisLysSerIleArgGl : 111 !.!..!!|||||||||!:!||| !! !|||||| !!:! :!!.!!!:!!! erMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHi 294905 : CTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCA : 294961 112 : nCysValGlnValLeuSerAlaAspTrpArgArgValGluGluAspAspHisArgGlu : 130 .|||:!!:!!! !:!!..! !||||||!:! !:!!!!:.!. !!:||||||! ! sCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAla 294962 : TTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCG : 295018 131 : IleMetMetArgGlyAlaGluLysGlyHisLeuLeuSerLysPheCysIleAlaPheM : 150 ||||||!!:!:!..!||| ! !!!. !:!!!!! !! !! ! !.!.! IleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleI 295019 : ATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAA : 295078 151 : etTyrCysGlyGlyLeuSerTyrAsnThrIleMetProPheLeuSerGlnThrSerGl : 169 !:||| !!..!!.!:!!||||||:!!.!!|||:::||||||...|||......! !|| leTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGl 295079 : TCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGA : 295135 170 : u<-><->GlnAsnValThrValArgProMetAlaTyrLeuGlyPheAspIleLeuPhe : 186 | :!!||| !|||:!!||| !!:!: !! !! !|||!:!!!::!!!!! ! uAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheVal 295136 : GAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTA : 295192 187 : AsnLeuGlnLeuMetProValTyr : 194 :!! ! ! ! !! |||..!||| AspAlaTyrSerSerProThrTyr 295193 : GACGCTTATTCCAGTCCTACCTAC : 295218 vulgar: CbirOr32 14 194 . KQ414889.1 294672 295218 + 258 M 155 465 G 0 6 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294673 295218 258 + . gene_id 15 ; sequence CbirOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294673 295218 . + . KQ414889.1 exonerate:protein2genome:local exon 294673 295218 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294673 295218 258 + . alignment_id 15 ; Query CbirOr32 ; Align 294673 15 465 ; Align 295144 170 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 254 Query range: 27 -> 267 Target range: 204260 -> 204980 28 : LeuLeuArgValLeuGlyIleTrpProLeuValTyrProAsnThrThrLysIleGluL : 47 :!!||| !!:!!:!!||| ||||||:!! ! |||:!!:!! !.!! !! IleLeuGlyIleValGlyAlaTrpProIleProVal---AsnSerSerProPheThrA 204261 : ATTTTAGGGATAGTCGGTGCGTGGCCGATTCCAGTG---AACTCCTCTCCGTTCACGA : 204315 48 : ysIleIleAlaMetPheSerPheValLeuCysTrpIleValLeuSerLeuPheLeuVa : 66 :!:!!:!! ! .!...! !|||:!! !:::...:::... |||.!.:!!|| rgLeuValArgArgIleGluHisValValThrTyrPheLeuPhePheLeuMetIleVa 204316 : GGCTAGTACGGCGAATAGAACACGTAGTCACCtatttcctcttctttctgaTGATCGT : 204372 67 : lLeuThrSerIleTyrThrPheSerGluArgSerIleMetArgGluLysMetLysMet : 85 |! ! ! !:!:|||..!||| !:!!..!!.!! ! !:! ::::!!|||!!: lProGlyLeuLeuTyrValPheLeuLysGluLysAsnGlyLysIleArgLeuLysIle 204373 : ACCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATT : 204429 86 : LeuGlyProLeuGlyTyrValPhePheSerMetLeuLysTyrPhePheLeuValAlaA : 105 |||||||||:!!! ! !! ! !.!...!.!.!!!||||||! ! !!:!!:!! !| LeuGlyProIleValAsnCysSerIleGlnPhePheLysTyrSerValIleLeuTyrA 204430 : CTCGGGCCGATCGTGAACTGCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACC : 204489 106 : rgHisLysSerIleArgGlnCysValGlnValLeuSerAlaAspTrpArgArgValGl : 124 || ! ! !.!|||!:!:!! !!:!!.!...!:!!!!! !||||||! !..!!.! rgIleAspLysIleGlnLysSerLeuAsnThrIleArgArgAspTrpIleGluAla-- 204490 : GGATCGACAAAATTCAGAAGAGTTTGAACACCATCAGACGCGACTGGATAGAGGCT-- : 204546 125 : uGluAspAspHisArgGluIleMetMetArgGlyAlaGluLysGlyHisLeuLeuSer : 143 !|||!!::!!||| !|||.!. ! !|||:!!! |||!.. !:!!! ! -ThrAspGluAsnArgLeuIlePheArgSerLysAlaLysIleGlyArgArgValLeu 204547 : -ACGGATGAAAATCGGTTGATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTG : 204600 144 : LysPheCysIleAlaPheMetTyrCysGlyGlyLeuSerTyrAsnThrIleMetProP : 163 !.!!... !||| !|||||| !!|||||||||!!!|||!..||||||:!:|||! LeuIleAlaAlaAlaThrMetTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProL 204601 : CTGATTGCAGCCGCCACTATGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTT : 204660 164 : heLeuSerGlnThr<-><->SerGluGlnAsnValThrValArgProMetAlaTyrLe : 180 !.|||!!! !||| !!! .!.|||||||||:!!||||||:!! !!! !! euLeuArgGlyThrIleValThrProAspAsnValThrIleArgProLeuProCysPr 204661 : TGTTGAGAGGAACGATCGTAACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCC : 204717 181 : uGlyPheAspIleLeuPheAsnLeuGlnLeuMetProValTyrValPheAlaPheCys : 199 !! !::: :::...|||||| !|||! ! !||| !|||! !.!!!.!||| oValTyrPheValPhePheAsnGluGlnArgSerProAsnTyrGluIleValPheIle 204718 : GGTTtactttgttttctttaacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATA : 204774 200 : LeuGlnCysValThrGlyIleValMetPheAsnIleThrThrValValCysCysLeuA : 219 |||||| !:!!.!!|||.!!|||! !:! !:!!! !!:!! !..!||| !!:!!. LeuGlnIleMetAlaGlyPheValThrTyrAlaValIleSerGlyThrCysGlyMetC 204775 : CTGCAAATTATGGCTGGTTTTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGT : 204834 220 : laAlaMetPheValAlaHisAlaCysGlyGlnValAspIleValLeuAlaArgValLy : 238 .!|||:!!|||||| !|||||||||.!!..!:!! |||:!!:!! !!:!:!!!! ysAlaLeuPheValLeuHisAlaCysSerMetLeuArgIleLeuValAsnLysMetAs 204835 : GCGCGCTGTTCGTTCTCCACGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAA : 204891 239 : sSerLeuValLysGlyGluLysArgAsnArgValGlnPheGluGlnCysMetAlaIle : 257 .:!!|||||| ! !! ! ! ! !!.!..!..!! ! .!.::! !!:||| ! nAlaLeuValAspLysAlaAspMetThrGluThrLeuValHisArgLysIleAlaAsp 204892 : CGCACTTGTGGATAAGGCGGACATGACCGAGACACTTGTGCACAGGAAGATCGCTGAT : 204948 258 : IleValGlnHisHisValArgValLeuArg : 267 ||||||:!!:!!!!...!!:!:!! !||| IleValGluTyrGlnThrLysIleLysArg 204949 : ATTGTTGAATATCAGACGAAGATAAAGAGG : 204980 vulgar: CbirOr32 27 267 . KQ414889.1 204260 204980 + 254 M 12 36 G 1 0 M 83 249 G 1 0 M 43 129 G 0 6 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204261 204980 254 + . gene_id 16 ; sequence CbirOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204261 204980 . + . KQ414889.1 exonerate:protein2genome:local exon 204261 204980 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 204261 204980 254 + . alignment_id 16 ; Query CbirOr32 ; Align 204261 28 36 ; Align 204297 41 249 ; Align 204546 125 129 ; Align 204681 168 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 253 Query range: 20 -> 267 Target range: 256655 -> 257405 21 : ThrLeuIleTrpAsnArgTrpLeuLeuArgValLeuGlyIleTrpProLeuValTyrP : 40 !:!||| ! !|||||||||!!!|||!:! !:!!||| !|||||| !! SerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpPro---ProSerS 256656 : AGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCA---CCCTCGT : 256710 41 : roAsnThrThrLysIleGluLysIleIleAlaMetPheSerPheValLeuCysTrpIl : 59 !!::!||||||! :!!|||::!! !:!!:!!!!: !!! ! !:!!:!!|||!:: erSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCysTyrGl 256711 : CGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGG : 256767 60 : eValLeuSerLeuPheLeuValLeuThrSerIleTyrThrPheSerGluArgSerIle : 78 ! !:!!! !!!! !|||:!!! ! !! !:!!:!!..!||| !!!: !..!! ! ySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAspAspSer 256768 : TTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGT : 256824 79 : MetArgGluLysMetLysMetLeuGlyProLeuGlyTyrValPhePheSerMetLeuL : 98 .!. |||:::||| ...||||||:!!.!!:!! !.!!.!!||| !! PheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerCysAlaA 256825 : TTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCA : 256884 99 : ysTyrPhePheLeuValAlaArgHisLysSerIleArgGlnCysValGlnValLeuSe : 117 !.||| !!.|||:!! !!:! |||..!|||||| ! ||||||:!! !:!!.. snTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHisIleGl 256885 : ATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGA : 256941 118 : rAlaAspTrpArgArgValGluGluAspAspHisArgGluIleMetMetArgGlyAla : 136 !.!!|||||||||! !|||..!..!!!: ! !!!:!:!!:!:||||||!:!..!||| uThrAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLysAsnAla 256942 : AACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCG : 256998 137 : GluLysGlyHisLeuLeuSerLysPheCysIleAlaPheMetTyrCysGlyGlyLeuS : 156 ..! |||!.!! !:!!:!!! !|||||| !|||.!!||| ! !!||| ... ArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyValPheC 256999 : AGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttct : 257058 157 : erTyr<-><-><->AsnThrIleMetProPheLeuSerGlnThrSerGluGlnAsnVa : 172 ::: :::.!!:!:! !! :!!! !!!...!.!!.!.:!!!.... ysPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGluThrTh 257059 : gtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGAAACAAC : 257115 173 : lThrValArgProMetAlaTyrLeuGlyPheAspIleLeuPheAsnLeuGlnLeuMet : 191 !! !|||||| !:!: !! ! !! !!:! ! ! |||!!.|||:!!.!.! !! rIleValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSer 257116 : GATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGT : 257172 192 : ProValTyrValPheAlaPheCysLeuGlnCysValThrGlyIleValMetPheAsnI : 211 |||..! !!! !.!!!.! !!! !:!!||| ! !:!!..!|||:!! ! !!.!! ProThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrS 257173 : CCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTA : 257232 212 : leThrThrValValCysCysLeuAlaAlaMetPheValAlaHisAlaCysGlyGlnVa : 230 !|||..! !:!!! ! !!|||||||||:!:|||!.!.!!||||||! !||||||:! erThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLe 257233 : GTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTT : 257289 231 : lAspIleValLeuAlaArgValLysSerLeuValLysGlyGluLysArgAsnArgVal : 249 ! !:!::!!:!!:!! !!:!!! !..!!!!|||!!.! !..!!:!!.!...... uThrValLeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArgGluLys 257290 : GACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaa : 257346 250 : GlnPheGlu<->GlnCysMetAlaIleIleValGlnHisHisValArgValLeuArg : 267 ||| :!! !!:!.!:!:||||||:!!||||||:!!|||||||||||| ThrPheProPheLysGlnIleGlyValIleValGluHisHisLeuArgValLeuArg 257347 : acgtttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTGAGG : 257405 vulgar: CbirOr32 20 267 . KQ414889.1 256655 257405 + 253 M 16 48 G 1 0 M 120 360 G 0 9 M 95 285 G 0 3 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256656 257405 253 + . gene_id 17 ; sequence CbirOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256656 257405 . + . KQ414889.1 exonerate:protein2genome:local exon 256656 257405 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 256656 257405 253 + . alignment_id 17 ; Query CbirOr32 ; Align 256656 21 48 ; Align 256704 38 360 ; Align 257073 158 285 ; Align 257361 253 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 250 Query range: 24 -> 267 Target range: 262864 -> 263602 25 : AsnArgTrpLeuLeuArgValLeuGlyIleTrpProLeuValTyrProAsnThrThrL : 44 |||||||||||||||!:! !:!!||| !||||||||| ! ! !!:::! !:!!! AsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeu---SerAlaSerIleSerA 262865 : AACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTG---TCCGCCTCGATCTCAA : 262919 45 : ysIleGluLysIleIleAlaMetPheSerPheValLeuCysTrpIleValLeuSerLe : 63 :!!!:|||::!|||||| !.!..!!! !.!!|||:!!|||!:: !:!!:!! !! rgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCysLeuIleLeuSe 262920 : GAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTGTCTCATACTATC : 262976 64 : uPheLeuValLeuThrSerIleTyrThrPheSerGluArgSerIleMetArgGluLys : 82 ! !:!!:!!! !:!!! !:!!:!!! ! !! !||| !..!! !.!.!.! !||| rThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsnPheHisMetLys 262977 : CACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAATTTCCATATGAAG : 263033 83 : MetLysMetLeuGlyProLeuGlyTyrValPhePheSerMetLeuLysTyrPhePheL : 102 :!!:!!:!:||||||||||||||| ! !||| !!.!!|||:!!!!.||| !!::| LeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleAsnTyrThrTrpL 263034 : CTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCAATTACACCTGGT : 263093 103 : euValAlaArgHisLysSerIleArgGlnCysValGlnValLeuSerAlaAspTrpAr : 121 ||:!! !!.! !|||..!|||!:! ||||||||| !:!!..!! !|||||| ! euLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGlnGluAspTrpCy 263094 : TGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTG : 263150 122 : gArgValGluGluAspAspHisArgGluIleMetMetArgGlyAlaGluLysGlyHis : 140 !! !||| ..! !!: !!!:!...||||||:!!!:!..!|||:!! ! |||!.! sIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAlaLysTyrGlyArg 263151 : TATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCGAAATACGGCCGC : 263207 141 : LeuLeuSerLysPheCysIleAlaPheMetTyrCysGlyGlyLeuSerTyrAsnThrI : 160 ! !:!!:!! ! !||| !|||||| ! .!! !:!!!!! ! ! !: TyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetCysLysCysLeuV 263208 : TACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAG : 263267 161 : leMetProPheLeuSerGlnThrSerGluGlnAsnValThrValArgProMetAlaTy : 179 !!! !!||| !!!!|||..!! !|||.!...! ! !..!||| !:!: ! alThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrArgIleLeuArgMe 263268 : TCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAGAATTCTACGTAT : 263324 180 : rLeuGlyPheAspIle<-><-><->LeuPheAsnLeuGlnLeuMetProValTyrVal : 195 ||| !! ! :!: :!!.!! :!!.!. !! |||..! !!! ! tLeuProCysProValTyrLysGluIleIleProValAspThrAsnProThrAsnGlu 263325 : GCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAATCCGACGAACGAG : 263381 196 : PheAlaPheCysLeuGlnCysValThrGlyIleValMetPheAsnIleThrThrValV : 215 .!! !.!!..! !|||! !:!!:!!|||.!!:!!:!: ! ! !|||..!! !! IlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaThrThrValGlyA 263382 : ATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTG : 263441 216 : alCysCysLeuAlaAlaMetPheValAlaHisAlaCysGlyGlnValAspIleValLe : 234 .!! ! !!:!!.!!|||:!!|||!.!!.!|||||||||||||||:!!:!!:!::!!:! laPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMe 263442 : CTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGAT : 263498 235 : uAlaArgValLysSerLeuVal<->LysGlyGluLysArgAsnArgValGlnPheGlu : 252 !:!! !!:!!! !..!!!!||| :!!..!..! ! ..!|||!:! !! !:! tSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLysAsnLeuTyrPhe 263499 : GTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAGAATCTTTATTTT : 263555 253 : GlnCysMetAlaIleIleValGlnHisHisValArgValLeuArg : 267 !!:!.!:!:||||||:!!||||||:!!|||||||||||| ThrGluIleGlyValIleValGluHisHisLeuArgValLeuArg 263556 : ACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTGAGG : 263602 vulgar: CbirOr32 24 267 . KQ414889.1 262864 263602 + 250 M 13 39 G 1 0 M 146 438 G 0 9 M 57 171 G 0 3 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262865 263602 250 + . gene_id 18 ; sequence CbirOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262865 263602 . + . KQ414889.1 exonerate:protein2genome:local exon 262865 263602 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 262865 263602 250 + . alignment_id 18 ; Query CbirOr32 ; Align 262865 25 39 ; Align 262904 39 438 ; Align 263351 185 171 ; Align 263525 242 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 214 Query range: 300 -> 390 Target range: 277371 -> 277713 301 : GluTrpAsnAsnSerAspSerIleAlaIleLeuThrTyrPhePheLeuPheValSerP : 320 ||||||::!:!!|||||| ! .!!!!: !|||:!!|||.!.:!!.!!:!!|||. GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 321 : heAlaPheAsnIlePheMetPheCysHisIleGlyGluLeuLeuThrGluGln >>> : 338 !....|||||||||||| ! |||:!!|||||||||:!!|||||||||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln++ 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGgt... : 277485 339 : > Target Intron 1 >>>> CysIleLysValGlyTyrThrSerTyrLysIleG : 349 72 bp |||! !||||||||| ! ..! !|||! !! . ++CysLysLysValGlyGluValValTyrMetThrA 277486 : ......................agTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGA : 277588 350 : luTrpTyrGluLeuProGlyLysAlaAlaLeuAspLeuMetPheMetIleThrMetSe : 368 !.|||||| ! ||||||! !|||! ! !|||:!!|||:!:.!!!!:|||:!!! || snTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSe 277589 : ATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATC : 277645 369 : rArgHisProValGlnIleThrAlaGlyLysLeuIleSerLeuSerPheThrAsnPhe : 387 |!!! ::::::|||||||||||||||||||||...:::||| ! !!..||| rSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277646 : TAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277702 388 : GlyAsnVal : 390 |||:!!||| GlyAspVal 277703 : GGCGATGTA : 277713 vulgar: CbirOr32 300 390 . KQ414889.1 277371 277713 + 214 M 37 111 5 0 2 I 0 68 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277713 214 + . gene_id 19 ; sequence CbirOr32 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277713 214 + . alignment_id 19 ; Query CbirOr32 ; Align 277372 301 111 ; Align 277555 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 202 Query range: 300 -> 390 Target range: 258264 -> 258624 301 : GluTrpAsnAsnSerAspSerIleAlaIleLeuThrTyrPhePheLeuPheValSerP : 320 ||||||::!!.....||| ::: :::||||||.!.:!!.!!:!!|||. GluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheMetIleLeuIleSerL 258265 : gaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTATGATACTCATATcac : 258322 321 : heAlaPheAsnIlePheMetPheCysHisIleGlyGluLeuLeuThrGluGln >>> : 338 ..:::||||||||||||:::...|||:!!|||||||||:!!|||||||||||| euSerPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluGln++ 258323 : tttctttcaatatttttgtaatatgttACATAGGTGAAATATTAACAGAACAGgt... : 258378 339 : > Target Intron 1 >>>> CysIleLysValGlyTyrThrSerTyrLysIleG : 349 90 bp |||! ||||||||| !!..! !|||! !! !! ++CysLysLysValGlyAspValValTyrMetThrA 258379 : ......................agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAG : 258499 350 : luTrpTyrGluLeuProGlyLysAlaAlaLeuAspLeuMetPheMetIleThrMetSe : 368 !:|||||| ! ||||||! !||| ! !|||||||||!!:!!.:!:|||.!! || spTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLeuValIleAlaArgSe 258500 : ACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTTGGTAATCGCACGATC : 258556 369 : rArgHisProValGlnIleThrAlaGlyLysLeuIleSerLeuSerPheThrAsnPhe : 387 |!!! !|||||||||||||||||||||...... ::!|||.!! !!..||| rSerValValValGlnIleThrAlaGlyLysPhePheHisMetSerIleTyrThrPhe 258557 : GAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatGTCCATTTACACATTC : 258613 388 : GlyAsnVal : 390 .!!:!!||| SerAspVal 258614 : AGCGATGTG : 258624 vulgar: CbirOr32 300 390 . KQ414889.1 258264 258624 + 202 M 37 111 5 0 2 I 0 86 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258265 258624 202 + . gene_id 20 ; sequence CbirOr32 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258265 258624 202 + . alignment_id 20 ; Query CbirOr32 ; Align 258265 301 111 ; Align 258466 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 336 -> 395 Target range: 254271 -> 254448 337 : GlnCysIleLysValGlyTyrThrSerTyrLysIleGluTrpTyrGluLeuProGlyL : 356 ||||||:!:||||||||| ! ..! !|||! !! !!!:|||||| ! |||||| !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 357 : ysAlaAlaLeuAspLeuMetPheMetIleThrMetSerArgHisProValGlnIleTh : 375 :! ! !|||||||||!!:.!.!!:|||||| |||!.! !|||:!!||||| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 376 : rAlaGlyLysLeuIleSerLeuSerPheThrAsnPheGlyAsnValLeuLysThrSer : 394 ||||||||||:::... :::|||.!! !!..||||||:!!||| !:!!|||!:! rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 254443 395 : Val : 395 :!! Leu 254444 : CTT : 254448 vulgar: CbirOr32 336 395 . KQ414889.1 254271 254448 + 140 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254448 140 + . gene_id 21 ; sequence CbirOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254448 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254448 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254448 140 + . alignment_id 21 ; Query CbirOr32 ; Align 254272 337 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 336 -> 396 Target range: 238625 -> 238805 337 : GlnCysIleLysValGlyTyrThrSerTyrLysIleGluTrpTyrGluLeuProGlyL : 356 ||||||:!:||||||||| ! ..! !|||! !! !!!:|||||| ! |||||| !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 357 : ysAlaAlaLeuAspLeuMetPheMetIleThrMetSerArgHisProValGlnIleTh : 375 :! ! !|||||||||!!:.!.!!:|||! ! |||!.! !|||:!!:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 376 : rAlaGlyLysLeuIleSerLeuSerPheThrAsnPheGlyAsnValLeuLysThrSer : 394 ||||||||||:!!:!! !:!!|||.!! !!..||||||:!!||| !:!!|||!:! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 395 : ValAla : 396 :!!||| LeuAla 238798 : CTTGCT : 238805 vulgar: CbirOr32 336 396 . KQ414889.1 238625 238805 + 137 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238805 137 + . gene_id 22 ; sequence CbirOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238805 137 + . alignment_id 22 ; Query CbirOr32 ; Align 238626 337 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 336 -> 395 Target range: 244655 -> 244832 337 : GlnCysIleLysValGlyTyrThrSerTyrLysIleGluTrpTyrGluLeuProGlyL : 356 ||||||:!:||||||||| ! ..! !|||! !! !!!:|||||| ! |||||| !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 357 : ysAlaAlaLeuAspLeuMetPheMetIleThrMetSerArgHisProValGlnIleTh : 375 :! ! !|||||||||!!:.!.!!:|||! ! |||!.! !|||:!!||||| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 376 : rAlaGlyLysLeuIleSerLeuSerPheThrAsnPheGlyAsnValLeuLysThrSer : 394 ||||||||||:!!:!! !:!!|||.!! !!..||||||:!!||| !:!!|||!.! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrLys 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAA : 244827 395 : Val : 395 :!! Leu 244828 : CTT : 244832 vulgar: CbirOr32 336 395 . KQ414889.1 244655 244832 + 135 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244832 135 + . gene_id 23 ; sequence CbirOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244832 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244832 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244832 135 + . alignment_id 23 ; Query CbirOr32 ; Align 244656 337 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 286 -> 337 Target range: 214587 -> 214740 287 : ThrThrLeuIleMetCysLeuIleGluTyrSerLeuIleThrGluTrpAsnAsnSerA : 306 ||| ||| :::::::::::: :::::: |||||||||:::!:!: ThrGlnAsnIleSerAsnIleValLysPheLeuIleLeu***GluTrpAsnSerAsnA 214588 : acgcaaaatatatcaaacatcgtcaaatttttaatattataggAATGGAATTCGAACA : 214645 307 : spSerIleAlaIleLeuThrTyrPhePheLeuPheValSerPheAlaPheAsnIlePh : 325 !!! !! !.!!! !:!!|||||| ! ! |||!:!:!!|||......||||||||||| snLeuThrThrThrValThrTyrValValLeuTyrIleSerLeuThrPheAsnIlePh 214646 : ATTTAACAACTACAGTAACTTACGTGGTGTTGTATATCTCTCtcactttcaatatttt : 214702 326 : eMetPheCysHisIleGlyGluLeuLeuThrGluGln : 337 |:::||||||::!||||||||||||:!!:!!|||||| eIlePheCysTyrIleGlyGluLeuValSerGluGln 214703 : catattttgttaCATAGGCGAGCTTGTGTCTGAACAG : 214740 vulgar: CbirOr32 286 337 . KQ414889.1 214587 214740 + 125 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214588 214740 125 + . gene_id 24 ; sequence CbirOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214588 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214588 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214588 214740 125 + . alignment_id 24 ; Query CbirOr32 ; Align 214588 287 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 297 -> 337 Target range: 210654 -> 210774 298 : LeuIleThrGluTrpAsnAsnSerAspSerIleAlaIleLeuThrTyrPhePheLeuP : 317 |||:!! !||||||:!!::!!.!||| !!|||::!! !|||||||||.!. ! |||. LeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValLeuL 210655 : CTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTACTCC : 210712 318 : heValSerPheAlaPheAsnIlePheMetPheCysHisIleGlyGluLeuLeuThrGl : 336 !!..!||| !!.!!||||||||||||!!:||||||:!!|||||||||:!!|||.!!|| euThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAlaGl 210713 : TCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGCTGA : 210769 337 : uGln : 337 |||| uGln 210770 : ACAg : 210774 vulgar: CbirOr32 297 337 . KQ414889.1 210654 210774 + 120 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210655 210774 120 + . gene_id 25 ; sequence CbirOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 210655 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210655 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210655 210774 120 + . alignment_id 25 ; Query CbirOr32 ; Align 210655 298 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 340 -> 390 Target range: 206251 -> 206401 341 : ValGlyTyrThrSerTyrLysIleGluTrpTyrGluLeuProGlyLysAlaAlaLeuA : 360 ||||||! ||||||! !! !:!:.!.||||||...||||||..!!:! !|||! !. ValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgS 206252 : GTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCT : 206309 361 : spLeuMetPheMetIleThrMetSerArgHisProValGlnIleThrAlaGlyLysLe : 379 .!:!!!!:.!.!!:|||.!!||||||!.!:!!|||:!!:!!:!!||||||||||||:! erMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMe 206310 : CTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAAT : 206366 380 : uIleSerLeuSerPheThrAsnPheGlyAsnVal : 390 !.!!..!:!!|||!!..!!!:!||| !:!!||| tPheGluMetSerLeuAlaSerPheThrAspVal 206367 : GTTCGAAATGTCTTTAGCTAGTTTCACCGATGTA : 206401 vulgar: CbirOr32 340 390 . KQ414889.1 206251 206401 + 119 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206252 206401 119 + . gene_id 26 ; sequence CbirOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206252 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206252 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206252 206401 119 + . alignment_id 26 ; Query CbirOr32 ; Align 206252 341 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 300 -> 337 Target range: 224323 -> 224434 301 : GluTrpAsnAsnSerAspSerIleAlaIleLeuThrTyrPhePheLeuPheValSerP : 320 ||||||::::::||| !!! !! !::! :!!|||||||||.!.|||.!!:!!|||. GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 321 : heAlaPheAsnIlePheMetPheCysHisIleGlyGluLeuLeuThrGluGln : 337 .....||||||||||||:::||||||:::||||||||||||:!!.!!|||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcag : 224434 vulgar: CbirOr32 300 337 . KQ414889.1 224323 224434 + 116 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224434 116 + . gene_id 27 ; sequence CbirOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224434 116 + . alignment_id 27 ; Query CbirOr32 ; Align 224324 301 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 293 -> 340 Target range: 264516 -> 264657 294 : IleGluTyrSerLeuIleThrGluTrpAsnAsnSerAspSerIleAlaIleLeuThrT : 313 ||| ! !..!:!!.!! !||||||.!.!:! ||| ::: !|||| IleThrIleAspValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrT 264517 : ATAACAATTGACGTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACAT : 264574 314 : yrPhePheLeuPheValSerPheAlaPheAsnIlePheMetPheCysHisIleGlyGl : 332 |||||.!.:!!.!.:!!|||.!...! !|||||||||:!:.!.|||:!!|||||||| yrPheMetIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGl 264575 : ATTTCATGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGA : 264631 333 : uLeuLeuThrGluGlnCysIleLys : 340 |:!!|||||||||||| |||||| uIleLeuThrGluGlnValIleLys 264632 : GATATTGACTGAGcaggtaattaaa : 264657 vulgar: CbirOr32 293 340 . KQ414889.1 264516 264657 + 115 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264517 264657 115 + . gene_id 28 ; sequence CbirOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264517 264657 . + . KQ414889.1 exonerate:protein2genome:local exon 264517 264657 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264517 264657 115 + . alignment_id 28 ; Query CbirOr32 ; Align 264517 294 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 300 -> 337 Target range: 219328 -> 219439 301 : GluTrpAsnAsnSerAspSerIleAlaIleLeuThrTyrPhePheLeuPheValSerP : 320 ||||||!!.:::!:!||| !! ::! !:!!||||||.!!.!!|||.!!:!!|||. GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 321 : heAlaPheAsnIlePheMetPheCysHisIleGlyGluLeuLeuThrGluGln : 337 !....||||||||||||:::||||||::!|||||||||:!!:!!.!!|||||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: CbirOr32 300 337 . KQ414889.1 219328 219439 + 113 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219439 113 + . gene_id 29 ; sequence CbirOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219439 113 + . alignment_id 29 ; Query CbirOr32 ; Align 219329 301 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 300 -> 340 Target range: 272836 -> 272956 301 : GluTrpAsnAsnSerAspSerIleAlaIleLeuThrTyrPhePheLeuPheValSerP : 320 ||||||!.!:!! !|||! ! ::!:!! !|||||||||.!.:!!.!!:!!|||. GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 321 : heAlaPheAsnIlePheMetPheCysHisIleGlyGluLeuLeuThrGluGlnCysIl : 339 !....||||||||||||::: |||:!!|||||||||:!!|||||||||::! !! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArgValMe 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGGTAAT : 272951 340 : eLys : 340 :::: tGln 272952 : gcaa : 272956 vulgar: CbirOr32 300 340 . KQ414889.1 272836 272956 + 112 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 272956 112 + . gene_id 30 ; sequence CbirOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272837 272956 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272956 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 272956 112 + . alignment_id 30 ; Query CbirOr32 ; Align 272837 301 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 183 -> 243 Target range: 202709 -> 202889 184 : IleLeuPheAsnLeuGlnLeuMetProValTyrValPheAlaPheCysLeuGlnCysV : 203 .!!:!!.!!:!!:!!::!! !! |||||| !!! !.!! !|||! :!!!:! !| PheIleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleV 202710 : TTTATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCG : 202767 204 : alThrGlyIleValMetPheAsnIleThrThrValValCysCysLeuAlaAlaMetPh : 222 ||.!!! !|||:!!!!: !..!:!!|||..!! !!.!|||||||||.!!|||:!!|| alAlaValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPh 202768 : TAGCTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTT : 202824 223 : eValAlaHisAlaCysGlyGlnValAspIleValLeuAlaArgValLysSerLeuVal : 241 |!.!!.!|||! !|||||||||:!!|||:!!:!!:!!||| !!:!!:!! !|||:!! eAlaValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMet 202825 : TGCGGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATG : 202881 242 : LysGly : 243 ! ||| AspGly 202882 : GATGGT : 202889 vulgar: CbirOr32 183 243 . KQ414889.1 202709 202889 + 111 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202710 202889 111 + . gene_id 31 ; sequence CbirOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202710 202889 . + . KQ414889.1 exonerate:protein2genome:local exon 202710 202889 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202710 202889 111 + . alignment_id 31 ; Query CbirOr32 ; Align 202710 184 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 336 -> 390 Target range: 264723 -> 264885 337 : GlnCysIleLysValGlyTyrThrSerTyrLysIleGluTrpTyrGluLeuProGlyL : 356 ||||||! ||||||||| ! ..! !|||! ! .!.|||||| ! |||||| !| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 357 : ysAlaAlaLeuAspLeuMetPheMetIleThrMetSerArgHisProValGlnIleTh : 375 ||! ! !|||||||||!!:.!!!!:||| !! |||!!! ! !!:!!.!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 376 : rAlaGlyLysLeuIleSerLeuSerPheThrAsnPheGlyAsnVal : 390 ||||||||||:!!:!! !:!!|||.!. !!..|||.!!:!!||| rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: CbirOr32 336 390 . KQ414889.1 264723 264885 + 106 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264885 106 + . gene_id 32 ; sequence CbirOr32 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264885 106 + . alignment_id 32 ; Query CbirOr32 ; Align 264724 337 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 557 Query range: 18 -> 271 Target range: 284523 -> 285285 19 : TyrThrIleGlnMetThrArgPhePheLeuArgThrIleGlyValTrpProLeuAlaL : 38 |||!:!:!!||||||!.!|||!::||||||!:! !!||||||||||||||||||::!| TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 39 : euCysGluThrArgArgGluLysLeuGlyCysAlaIleValAlaAlaIleSerSerPh : 57 |||||! !|||! ! !||||||:!!.!!! !!.!:!!:!!||| !||||||!!!|| euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 58 : eLeuLeuLeuPheLeuPheIleProCysIleLeuCysThrPheLeuMetLysThr<-> : 76 ||||:!! !||||||!!.:!!|||||| !||||||||| ! ||| |||||| eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 77 : AspLeuIleThrLysLeuArgPheGlyLeuGlyAlaSerThrTyrMetLeuMetAlaV : 95 |||||| !||||||:!!!:!.!. :!!||| !! !!:!!:! :!!||||||! AspLeuAspThrLysIleLysMet---IleGlyProLeuSerPheCysMetMetAlaA 284696 : GATCTCGACACGAAGATCAAAATG---ATCGGTCCTCTGAGTTTCTGCATGATGGCAG : 284752 96 : alAlaLysGlnTyrIleLeuLeuThrArgSerLysSerIleThrGluCysIleIleGl : 114 .! !||| ! |||||||||:!!:!!|||.!! !.!||| !:!!|||:!:! .! laIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAs 284753 : CGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGA : 284809 115 : nIleArgLysAspTrpAsp<->ArgIleMetLeuAlaArgGluThrAspLeuGluIle : 132 .|||||| !||||||..! ! !:!! !! !::::::||| ::: |||||| pIleArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIle 284810 : CATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatc : 284866 133 : MetLeuAspAsnValLysPheGlyArgArgLeuSerIleValCysThrValSerMetT : 152 ||| !|||!:!!.!!:!.!!|||||| !|||:!!||| !!|||.!!! !! !|||| MetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetT 284867 : aTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGT : 284926 153 : yrThr<->AlaHisValLeuArgAsnValLeuProPheValLysProArgThrGlnIl : 170 ||:!! !.! ! !!! !! !!..|||:!!|||!!. !! ! !||||||:!!|| yrSerGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIl 284927 : ATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGAT : 284983 171 : eIleGlyAsnGluThrValArgLeuLeuLeuTyrProValTyrArgGlyLeuPheAsp : 189 ||||! !|||||||||||||||! !! ! !!:!|||:!!||||||||||||.!!||| eIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAsp 284984 : CATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGAT : 285040 190 : ValArgAsnSerProTyrPheGluIleThrGlnIleValGlnMetMetGlyGlyTyrV : 209 !|||!.!||||||! |||||||||..!|||.!!:!!||| :!!!.!!.!!:!| ProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheV 285041 : CCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCG : 285100 210 : alIleTyrThrLeuThrIleSerAlaCysSerIleAlaAlaValPheValMetHisTh : 228 ||||||||:!!:!!|||:!!.!!|||||||||:!:|||||||||||||||||||||.. alIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisVa 285101 : TTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGT : 285157 229 : rArgGlyGlnIleArgIleLeuMetLeuLysMetAspAspLeuAlaAspGlyLysLys : 247 ! !!||||||.!!|||||||||:!! !|||:!!||| ! |||!.!|||||| !||| lCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLys 285158 : CTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAA : 285214 248 : ArgGlnSerAlaCysAsnThrThrSerAlaGlnArgLeuGlyAspIleValArgSerH : 267 !!::!!.!!.!! !:!||| !! !||||||||||||||||||:!!..! !| GlyArgLysGlyLeu---SerThrHisGluGlnArgLeuGlyAspIleIleGluHisH 285215 : GGGAGGAAGGGGTTG---AGCACGCATGAACAACGACTGGGAGATATCATCGAGCATC : 285271 268 : isValSerIleLeu : 271 ||:!!!.!|||||| isLeuLysIleLeu 285272 : ATCTGAAGATACTG : 285285 vulgar: CbirOr27 18 271 . KQ414889.1 284523 285285 + 557 M 57 171 G 0 3 M 8 24 G 1 0 M 36 108 G 0 3 M 33 99 G 0 3 M 99 297 G 1 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 285285 557 + . gene_id 1 ; sequence CbirOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284524 285285 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 285285 . + . insertions 9 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 284524 285285 557 + . alignment_id 1 ; Query CbirOr27 ; Align 284524 19 171 ; Align 284698 76 24 ; Align 284722 85 108 ; Align 284833 121 99 ; Align 284935 154 297 ; Align 285232 254 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 541 Query range: 18 -> 271 Target range: 278576 -> 279338 19 : TyrThrIleGlnMetThrArgPhePheLeuArgThrIleGlyValTrpProLeuAlaL : 38 |||!:!:!!||||||!.!|||!::||||||!:! !!||||||||||||||||||::!| TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 39 : euCysGluThrArgArgGluLysLeuGlyCysAlaIleValAlaAlaIleSerSerPh : 57 |||||! !|||! ! !||||||:!!.!!! !!.!:!!:!!||| !||||||!!!|| euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 58 : eLeuLeuLeuPheLeuPheIleProCysIleLeuCysThrPheLeuMetLysThr<-> : 76 ||||:!! !||||||!!.:!!|||||| !||||||||| ! ||| |||||| eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 77 : AspLeuIleThrLysLeuArgPheGlyLeuGlyAlaSerThrTyrMetLeuMetAlaV : 95 |||||| !||||||:!!!:!.!. :!!||| !! !!:!!:! !||||||. AspLeuAspThrLysIleLysMet---IleGlyProLeuSerPheCysThrMetAlaT 278749 : GATCTCGACACGAAGATCAAAATG---ATCGGTCCTCTAAGTTTCTGCACGATGGCAA : 278805 96 : alAlaLysGlnTyrIleLeuLeuThrArgSerLysSerIleThrGluCysIleIleGl : 114 .! !||| ! |||||||||:!!:!!|||.!! !.!||| !:!!|||:!:! !.! hrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAs 278806 : CGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGA : 278862 115 : nIleArgLysAspTrpAspArgIleMetLeuAlaArg<->GluThrAspLeuGluIle : 132 .||||||! !||||||..!! !! !:!:! ! !||| ||| ::: |||||| pIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIle 278863 : CATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatc : 278919 133 : MetLeuAspAsnValLysPheGlyArgArgLeuSerIleValCysThrValSerMetT : 152 ||| !|||!:!!.!!:!.!!|||||| !|||:!!||| !! !!.!!! !! !|||| MetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetT 278920 : aTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGT : 278979 153 : yrThrAlaHisValLeuArgAsn<->ValLeuProPheValLysProArgThrGlnIl : 170 ||:!!!.! |||!!! !!.! |||:!!|||!!. !! ! !||||||:!!|| yrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIl 278980 : ATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGAT : 279036 171 : eIleGlyAsnGluThrValArgLeuLeuLeuTyrProValTyrArgGlyLeuPheAsp : 189 ||||! !|||||||||||||||! !! ! !!:!|||:!!||||||||||||.!!||| eIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAsp 279037 : CATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGAT : 279093 190 : ValArgAsnSerProTyrPheGluIleThrGlnIleValGlnMetMetGlyGlyTyrV : 209 !|||!.!||||||! |||||||||..!|||.!!:!!||| :!!!.!!.!!:!| ProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheV 279094 : CCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCG : 279153 210 : alIleTyrThrLeuThrIleSerAlaCysSerIleAlaAlaValPheValMetHisTh : 228 ||:!!|||:!!:!!|||:!!.!!|||||||||:!: !||||||||||||||||||.. alLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisVa 279154 : TTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGT : 279210 229 : rArgGlyGlnIleArgIleLeuMetLeuLysMetAspAspLeuAlaAspGlyLysLys : 247 ! !!||||||.!!|||||||||:!! !|||:!!||| ! ||| !|||||| !||| lCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLys 279211 : CTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAA : 279267 248 : ArgGlnSerAlaCysAsnThrThrSerAlaGlnArgLeuGlyAspIleValArgSerH : 267 !!::!!.!::!! !:!||| !! !||||||||||||||||||:!!..! !| GlyArgLysSerLeu---SerThrHisGluGlnArgLeuGlyAspIleIleGluHisH 279268 : GGGAGGAAGAGCTTG---AGCACGCATGAACAACGACTGGGAGATATCATCGAGCATC : 279324 268 : isValSerIleLeu : 271 ||:!!!.!|||||| isLeuLysIleLeu 279325 : ATCTGAAGATACTG : 279338 vulgar: CbirOr27 18 271 . KQ414889.1 278576 279338 + 541 M 57 171 G 0 3 M 8 24 G 1 0 M 42 126 G 0 3 M 33 99 G 0 3 M 93 279 G 1 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 279338 541 + . gene_id 2 ; sequence CbirOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278577 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279338 . + . insertions 9 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 278577 279338 541 + . alignment_id 2 ; Query CbirOr27 ; Align 278577 19 171 ; Align 278751 76 24 ; Align 278775 85 126 ; Align 278904 127 99 ; Align 279006 160 279 ; Align 279285 254 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 313 Query range: 13 -> 250 Target range: 217159 -> 217867 14 : GluAspGlyCysLysTyrThrIleGlnMetThrArgPhePheLeuArgThrIleGlyV : 33 ||| ... ... ::!|||||| !!.!|||!::!!.|||!:! !!!!:|||: GluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyL 217160 : gagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTC : 217217 34 : alTrpProLeuAlaLeuCysGluThrArgArgGluLysLeuGlyCysAlaIleValAl : 52 !!|||||| !:!!! ! ! |||||| !..!|||:!! !! ! !:!::!! euTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAs 217218 : TTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAA : 217274 53 : aAlaIleSerSerPheLeuLeuLeuPheLeuPheIleProCysIleLeuCysThrPhe : 71 !|||:!!!!!! ! !|||:!! !|||||||||:!!|||||| !:!!! !..!||| nAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPhe 217275 : CGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTC : 217331 72 : LeuMetLysThrAspLeuIleThrLysLeuArgPheGlyLeuGlyAlaSerThrTyrM : 91 ||| !|||||| ! !||||||!:!.!. !!!||| !!! !! !!:! LeuGluValGluAspLeuTyrAspLysLeuLysLeu---PheGlyProLeuIlePheC 217332 : CTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTG---TTCGGTCCGTTGATCTTCT : 217388 92 : etLeuMetAlaValAlaLysGlnTyrIleLeuLeuThrArgSerLysSerIleThrGl : 110 :!!|||||| !!!.!||| ! ||| !|||:!!..!!.!!.! !..!||| !|| ysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGl 217389 : GCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGA : 217445 111 : uCysIleIleGlnIleArgLysAspTrpAspArgIleMetLeuAlaArgGluThrAsp : 129 ||||:!:! !::!|||..!::!|||||| !.!:!!! ! ! |||! !||| uCysValArgArgIleGluArgAspTrpArgAsnValArgCys------GluLysAsp 217446 : GTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGC------GAGAAAGAC : 217496 130 : LeuGluIleMetLeuAspAsnValLysPheGlyArgArgLeuSerIleValCysThrV : 149 !||| |||:!!! |||!.!!!.|||||||||!:!||| !:!!:!!|||||| ArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrP 217497 : AGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCT : 217556 150 : alSerMetTyrThrAlaHisValLeuArgAsnVal<->LeuProPheValLysProAr : 167 !!! !||||||!:!... |||... ::! :!!|||.!! ! ! !|| hePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyAr 217557 : TCTTCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAG : 217613 168 : g<->ThrGlnIleIleGlyAsnGluThrValArgLeuLeuLeuTyrProValTyrArg : 185 | !..! ! !|||||| ||| !!! !! !|||:!!!:!||| !! !:! gIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLys 217614 : AATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAG : 217670 186 : GlyLeuPheAspValArgAsnSerProTyrPheGluIleThrGlnIleValGlnMetM : 205 !:!!.!!|||..!||| !!!!!||| !||||||..! .!!:!!|||:!!! TyrIleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuI 217671 : TATATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGA : 217730 206 : etGlyGlyTyrValIleTyrThrLeuThrIleSerAlaCysSerIleAlaAlaValPh : 224 !:!.!||| !:!!!!::!! !:!!||| :!!|||||||||:!:||||||!.!|| leAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPh 217731 : TCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTT : 217787 225 : eValMetHisThrArgGlyGlnIleArgIleLeuMetLeuLysMetAspAspLeuAla : 243 |!.!:!:|||.!! !!|||||||||..!:!:|||||| ! !:!!.!. !!||| ! eAlaValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIle 217788 : CGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATC : 217844 244 : AspGlyLysLysArgGlnSer : 250 ||||||!:! ! !..!||| AspGlyArgAlaAspMetSer 217845 : GACGGTAGAGCGGATATGAGC : 217867 vulgar: CbirOr27 13 250 . KQ414889.1 217159 217867 + 313 M 70 210 G 1 0 M 40 120 G 2 0 M 34 102 G 0 3 M 7 21 G 0 3 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217160 217867 313 + . gene_id 3 ; sequence CbirOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217160 217867 . + . KQ414889.1 exonerate:protein2genome:local exon 217160 217867 . + . insertions 6 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 217160 217867 313 + . alignment_id 3 ; Query CbirOr27 ; Align 217160 14 210 ; Align 217370 85 120 ; Align 217490 127 102 ; Align 217595 161 21 ; Align 217619 168 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 297 Query range: 299 -> 410 Target range: 210645 -> 212081 300 : SerLeuTyrThrMetThrValTrpGluGlnArgLysThrIleGluThrIleThrPheP : 319 |||! !!:! !:!: !! !|||!!:...!:! ! !!|||...!:!:!:|||!:!. SerGlnPheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrI 210646 : TCGCAATTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACA : 210703 320 : heLeuIleValThrCysPheThrPheAsnThrPheIlePheCysTyrIleGlyAspVa : 338 !.:!!:!!:!!|||! ! !!|||||||||! !|||||||||||||||||||||!!:|| leValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluVa 210704 : TAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGT : 210760 339 : lLeuAlaGluGlu >>>> Target Intron 1 >>>> CysLeuGluIleGlyI : 348 ||||||||||:!: 999 bp :!!:!!:!!||| lLeuAlaGluGln++ ++ThrValLysValGlyG 210761 : GTTGGCTGAACAggt.........................agACAGTAAAAGTTGGAG : 211789 349 : leLysSerTyrMetIleAspTrpTyrArgLeuProGlyLysGluGlyLeuGlyIleMe : 367 !|||||||||||||||||||||||||||:!!|||||||||:!!||||||! !:!! luLysSerTyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValValPr 211790 : AAAAGTCTTACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACC : 211846 368 : tLeuMetMetGlnMetSerAsnAlaThrIleLysLeuThrAlaGlyLysPheMetAsp : 386 ||||||!!:...||||||:!!:!!|||! !|||:!!|||||||||!!..!!!!:! ! oLeuMetIleSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleVal 211847 : CTTGATGATCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTT : 211903 387 : LeuSerLeuAlaSerPheCysSer >>>> Target Intron 2 >>>> IleMe : 396 ||||||:!!::!|||||| !!..! 104 bp :!!!! LeuSerIleSerSerPheGlyAsp++ ++ValIl 211904 : CTTTCAATCAGTAGTTTCGGTGACgt.........................agGTTAT : 212037 397 : tLysThrAlaLeuAlaTyrLeuAsnLeuLeuArgThrPheThr : 410 :||||||:!!:!!.!!|||||||||:!!||||||||||||||| eLysThrSerValThrTyrLeuAsnMetLeuArgThrPheThr 212038 : CAAGACTTCGGTAACATACTTGAACATGCTACGAACATTCACA : 212081 vulgar: CbirOr27 299 410 . KQ414889.1 210645 212081 + 297 M 43 129 5 0 2 I 0 995 3 0 2 M 52 156 5 0 2 I 0 100 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210646 212081 297 + . gene_id 4 ; sequence CbirOr27 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 210646 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210646 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211929 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 211930 211931 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 211930 212033 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 212032 212033 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 212034 212081 . + . KQ414889.1 exonerate:protein2genome:local exon 212034 212081 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210646 212081 297 + . alignment_id 4 ; Query CbirOr27 ; Align 210646 300 129 ; Align 211774 343 156 ; Align 212034 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 296 Query range: 13 -> 247 Target range: 208197 -> 208896 14 : GluAspGlyCysLysTyrThrIleGlnMetThrArgPhePheLeuArgThrIleGlyV : 33 :!!:!!! ! !..!:!!.!:!!!:::!!!.! !!:: |||!:!! !|||||| LysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuLysIleIleGlyS 208198 : AAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGAAGATAATCGGCT : 208255 34 : alTrpProLeuAlaLeuCysGluThrArgArgGluLysLeuGlyCysAlaIleValAl : 52 !|||||| !:!!:!! !...:!! !! !|||!!. ! ! ! !:!!:!! erTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHisIleLeuLeuAs 208256 : CCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCATATTCTCTTAAA : 208312 53 : aAlaIleSerSerPheLeuLeuLeuPheLeuPheIleProCysIleLeuCysThrPhe : 71 !!.!:!!||| !! !|||||| !|||:!! ! |||||| ! !:!!! !.!!.!! nValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGlyMetPheAlaIle 208313 : CGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATGTTCGCGATC : 208369 72 : LeuMetLysThrAspLeuIleThrLysLeuArgPheGlyLeuGlyAlaSerThrTyrM : 91 |||:!: !|||!!! ! !:!!|||!:!.!! ! !.!!||| !!:!!:!. LeuValValGluAspPheTyrAspGlnLeuLysIle---CysSerAlaLeuSerPheP 208370 : CTCGTAGTCGAGGATTTTTACGACCAATTAAAGATC---TGTAGCGCTCTGAGCTTCT : 208426 92 : etLeuMetAlaValAlaLysGlnTyrIleLeuLeuThrArgSerLysSerIleThrGl : 110 !.:!!|||||| !!.!!||| ! |||:!! !..!|||..! ..!||| !:! heMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAspIleArgLy 208427 : TCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGACATACGGAA : 208483 111 : uCysIleIleGlnIleArgLysAspTrpAspArgIleMetLeuAlaArgGluThrAsp : 129 !|||:!! ! :!!..! |||||| !.!:!: ! !!.!||| !||| sCysValGluTyrValGluAlaAspTrpArgAsnVal------GluHisGluGluAsp 208484 : GTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTG------GAGCACGAGGAGGAC : 208534 130 : LeuGluIleMetLeuAspAsnValLysPheGlyArgArgLeuSerIleValCysThrV : 149 !:!!|||||||||||||||!.!!..|||!.!|||!:!|||! !:!::!!||| !! ArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysGlyA 208535 : AGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCGGAG : 208594 150 : alSerMetTyrThrAlaHisValLeuArgAsnVal<->LeuProPheValLysProAr : 167 .!! !|||||| !!.. :::... :!! ||||||.!!..!::! !!: laPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAspLy 208595 : CTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGACAA : 208651 168 : g<->ThrGlnIleIleGlyAsnGluThrValArgLeuLeuLeuTyrProValTyrArg : 185 ! ..!:!! !|||||| !||| !||| !|||:!!||||||||| !!:! sValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValProLys 208652 : GGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCTAAG : 208708 186 : GlyLeuPheAspValArgAsnSerProTyrPheGluIleThrGlnIleValGlnMetM : 205 !:!!.!.||||||||| !!|||||| !|||||| ! ! ! ||||||:!!: PheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnLeuL 208709 : TTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAATTGT : 208768 206 : etGlyGlyTyrValIleTyrThrLeuThrIleSerAlaCysSerIleAlaAlaValPh : 224 !!..!|||!:!||| !:!!!.!:!!|||:!!.!!||||||.!!:!:||||||:!!.! euSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLeuLe 208769 : TGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCTGCT : 208825 225 : eValMetHisThrArgGlyGlnIleArgIleLeuMetLeuLysMetAspAspLeuAla : 243 !!.!||||||.!! !!||||||:!:!:!|||||||||! ! !|||!!: ! |||!.! uAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeuVal 208826 : CGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTGGTC : 208882 244 : AspGlyLysLys : 247 ||||||::!:!! AspGlyArgGlu 208883 : GATGGACGGGAG : 208896 vulgar: CbirOr27 13 247 . KQ414889.1 208197 208896 + 296 M 70 210 G 1 0 M 38 114 G 2 0 M 36 108 G 0 3 M 7 21 G 0 3 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208198 208896 296 + . gene_id 5 ; sequence CbirOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208198 208896 . + . KQ414889.1 exonerate:protein2genome:local exon 208198 208896 . + . insertions 6 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 208198 208896 296 + . alignment_id 5 ; Query CbirOr27 ; Align 208198 14 210 ; Align 208408 85 114 ; Align 208522 125 108 ; Align 208633 161 21 ; Align 208657 168 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 265 Query range: 306 -> 410 Target range: 224326 -> 224770 307 : TrpGluGlnArgLysThrIleGluThrIleThrPhePheLeuIleValThrCysPheT : 326 |||...... ! !! !....!!:!:|||!:!|||:!!:!!:!!! !! ...| TrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerLeuT 224327 : tggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtctta : 224384 327 : hrPheAsnThrPheIlePheCysTyrIleGlyAspValLeuAlaGluGlu >>>> T : 343 |||||||| |||||||||||||||||||||!!::!!:!!||||||::: hrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln++ 224385 : ctttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggt...... : 224437 344 : arget Intron 1 >>>> CysLeuGluIleGlyIleLysSerTyrMetIleAspT : 355 65 bp ||| :::|||||| ! !|||||||||||||||| ++CysGluLysIleGlyGlnValSerTyrMetIleAspT 224438 : ...................agtgtgaaaaaattggacaAGTGTCGTACATGATCGACT : 224536 356 : rpTyrArgLeuProGlyLysGluGlyLeuGlyIleMetLeuMetMetGlnMetSerAs : 374 ||||||||||| !!|||!!.:!! !||| !! !!!:|||!!:!!: !|||||||| rpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSerAs 224537 : GGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGATGTCCAA : 224593 375 : nAlaThrIleLysLeuThrAlaGlyLysPheMetAspLeuSerLeuAlaSerPheCys : 393 |:!!:!!||||||||||||||||||!!..!.:!:!!:|||!!!|||.!!!!!||| !! nSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrThrPheGly 224594 : TTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCACTTTCGGT : 224650 394 : Ser >>>> Target Intron 2 >>>> IleMetLysThrAlaLeuAlaTyrLe : 403 ..! 67 bp :!!:!:|||||||||:!!|||!:!|| Asp++ ++ValValLysThrAlaValAlaPheLe 224651 : GACgt.........................agGTTGTCAAGACAGCTGTCGCATTTTT : 224747 404 : uAsnLeuLeuArgThrPheThr : 410 ||||:!!|||||||||!!.||| uAsnValLeuArgThrLeuThr 224748 : GAACGTGTTACGAACATTGact : 224770 vulgar: CbirOr27 306 410 . KQ414889.1 224326 224770 + 265 M 36 108 5 0 2 I 0 61 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224327 224770 265 + . gene_id 6 ; sequence CbirOr27 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224327 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224327 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224655 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224655 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224656 224657 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224656 224722 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 224721 224722 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 224723 224770 . + . KQ414889.1 exonerate:protein2genome:local exon 224723 224770 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224327 224770 265 + . alignment_id 6 ; Query CbirOr27 ; Align 224327 307 108 ; Align 224500 343 156 ; Align 224723 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 261 Query range: 10 -> 271 Target range: 256628 -> 257402 11 : ThrSerAlaGluAspGlyCysLysTyrThrIleGlnMetThrArgPhePheLeuArgT : 30 |||!:! !:!!..! ! !! ! |||!:!:!!|||:!!!.!|||!::||||||!:! ThrAsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysP 256629 : ACGAATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAAC : 256686 31 : hrIleGlyValTrpProLeuAlaLeuCysGluThrArgArgGluLysLeuGlyCysAl : 49 !!||||||!.!||||||! !:!!! !! ! |||! !! !|||::! !! !! roIleGlyAlaTrpProProSerSerSerThrThrThrLeuGluArgAsnValSerIl 256687 : CTATAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGAT : 256743 50 : aIleValAlaAlaIleSerSerPheLeuLeuLeuPheLeuPheIleProCysIleLeu : 68 !:!!:!! ! !:!!!!!! ! !! !:!!|||||| !!!.|||||||||:!:||| eValLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIleProCysLeuLeu 256744 : CGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTC : 256800 69 : CysThrPheLeuMetLysThrAspLeuIleThrLysLeuArgPheGlyLeuGlyAlaS : 88 !..!|||||| ! !..!!!! |||:::::: ......||| !!! HisValPheLeuAspAspAspSerPheTyrMetLysValLys---AsnPheGlyProM 256801 : CATGTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaa---aatttcggtCCTA : 256857 89 : erThrTyrMetLeuMetAlaValAlaLysGlnTyrIleLeuLeuThrArgSerLysSe : 107 !!:!:!! !:!!!!:::! !|||!!. ! :!:|||||| !!:!.!!|||.. etSerHisTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAs 256858 : TGAGCCATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGA : 256914 108 : rIleThrGluCysIleIleGlnIleArgLysAspTrpAspArgIleMetLeuAlaArg : 126 !||| ! ! |||:!! !!.|||..!! !|||||| |||:!! !||| pIleArgTyrCysValGluHisIleGluThrAspTrpArg------MetValArgArg 256915 : CATACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGA------ATGGTGAGGAGG : 256965 127 : GluThrAspLeuGluIleMetLeuAspAsnValLysPheGlyArgArgLeuSerIleV : 146 |||! !|||! !:!!:!:|||:!! ! |||!.!!:!||||||||| !:!!:!!! ! GluLysAspGlnGlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrP 256966 : GAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACAT : 257025 147 : alCysThrValSerMetTyrThrAlaHisValLeuArgAsnValLeuProPheValLy : 165 !!|||.!!!.!! !||| ! !:!!.! |||! ! !! :!!!! heCysAlaAlaIleMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAs 257026 : TTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAA : 257082 166 : sProArgThrGlnIleIleGlyAsnGluThr<-><->ValArgLeuLeuLeuTyrPro : 182 . !!..!! ! !:!:|||||||||||| ||||||:!!|||! ! ! !! nThrGluIleIleHisValGlyAsnGluThrThrIleValArgValLeuProValThr 257083 : CACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACC : 257139 183 : ValTyrArgGlyLeuPheAspValArgAsnSerProTyrPheGluIleThrGlnIleV : 202 ||||||!:! !|||!!.:!!||| !.!.|||||| !||||||..! .!!: ValTyrLysLysLeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheM 257140 : GTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTA : 257199 203 : alGlnMetMetGlyGlyTyrValIleTyrThrLeuThrIleSerAlaCysSerIleAl : 221 !!|||! !..!..! !:!! !||| !|||:!!||| !! !|||:!!|| etGlnThrTrpSerSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAl 257200 : TGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGC : 257256 222 : aAlaValPheValMetHisThrArgGlyGlnIleArgIleLeuMetLeuLysMetAsp : 240 ||||||||||!.!! |||.!! !||||||:!:! !:!:||||||! ! !!!: aAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThr 257257 : GGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACA : 257313 241 : AspLeuAlaAspGlyLysLysArgGlnSerAlaCysAsnThrThrSerAlaGlnArgL : 260 !!:!!!!.!:!!! !..!!:!!.!!::... ...||| !:!!!:!: GluPheValAsnGluSerArgAsnArgGlu------LysThrPheProPheLysGlnI 257314 : GAGTTTGTGAATGAGTCGAGGAATCGggag------aaaacgtttcctttCAAGCAAA : 257367 261 : euGlyAspIleValArgSerHisValSerIleLeu : 271 !!|||! ||||||..! !|||:!!!!!:!:||| leGlyValIleValGluHisHisLeuArgValLeu 257368 : TAGGCGTGATTGTGGAGCATCATTTAAGAGTGCTG : 257402 vulgar: CbirOr27 10 271 . KQ414889.1 256628 257402 + 261 M 72 216 G 1 0 M 37 111 G 2 0 M 53 159 G 0 6 M 75 225 G 2 0 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256629 257402 261 + . gene_id 7 ; sequence CbirOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256629 257402 . + . KQ414889.1 exonerate:protein2genome:local exon 256629 257402 . + . insertions 6 ; deletions 5 KQ414889.1 exonerate:protein2genome:local similarity 256629 257402 261 + . alignment_id 7 ; Query CbirOr27 ; Align 256629 11 216 ; Align 256845 84 111 ; Align 256956 123 159 ; Align 257121 176 225 ; Align 257346 253 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 259 Query range: 283 -> 410 Target range: 301620 -> 302163 284 : MetCysPheAlaAspValPheGlyTyrThrPheLeuIleCysPheLeuSerLeuTyrT : 303 :!:||| ... ||| |||!!. ! ! |||||| !!:!! ! LeuCysAlaValIleLysPheGluSerThrLeuAsnAlaLysPheLeuArgValIle* 301621 : CTCTGCgctgtaattaaatttgaatctACTTTAAATGCAAAGTTTTTACGAGTAATTT : 301678 304 : hrMetThrValTrpGluGlnArgLysThrIleGluThrIleThrPhePheLeuIleVa : 322 !.!. !! !|||:!!.!.!!! ! ||||||! ! !:!:||||||||| !:!::! **Phe***GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLe 301679 : GATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTT : 301735 323 : lThrCysPheThrPheAsnThrPheIlePheCysTyrIleGlyAspValLeuAlaGlu : 341 !|||! ||||||||||||! !|||||||||||||||||||||!!::!!|||:!!||| uThrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGlu 301736 : AACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAA : 301792 342 : Glu >>>> Target Intron 1 >>>> CysLeuGluIleGlyIleLysSerTy : 351 :!! 80 bp ||| !:!!|||||| ! !||||| Gln++ ++CysSerGlnIleGlySerAlaSerTy 301793 : CAGgt.........................agTGTAGCCAAATTGGTTCAGCATCGTA : 301902 352 : rMetIleAspTrpTyrArgLeuProGlyLysGluGlyLeuGlyIleMetLeuMetMet : 370 | !||||||||||||!.!||||||!.!|||..!!.!! !! !:!!!!:|||:!:! rGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSer 301903 : CGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGC : 301959 371 : GlnMetSerAsnAlaThrIleLysLeuThrAlaGlyLysPheMetAspLeuSerLeuA : 390 !!!:|||.!. ! !! ||||||||||||||||||.!.!!:|||||||||||| ValIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuA 301960 : GTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGA : 302019 391 : laSerPheCysSer >>>> Target Intron 2 >>>> IleMetLysThrAla : 399 !!!!||| !!||| 82 bp :!::!!||||||:!! snThrPheSerSer++ ++ValValLysThrSer 302020 : ATACATTCAGCTCTgt.........................agGTGGTGAAAACATCG : 302128 400 : LeuAlaTyrLeuAsnLeuLeuArgThrPheThr : 410 :!!!.!||||||||||||||||||||| !!||| ValValTyrLeuAsnLeuLeuArgThrValThr 302129 : GTGGTGTACTTGAATTTACTGCGAACAGTTACA : 302163 vulgar: CbirOr27 283 410 . KQ414889.1 301620 302163 + 259 M 59 177 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301621 302163 259 + . gene_id 8 ; sequence CbirOr27 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301621 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301621 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302163 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302163 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301621 302163 259 + . alignment_id 8 ; Query CbirOr27 ; Align 301621 284 177 ; Align 301878 343 156 ; Align 302116 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 256 Query range: 13 -> 250 Target range: 212857 -> 213565 14 : GluAspGlyCysLysTyrThrIleGlnMetThrArgPhePheLeuArgThrIleGlyV : 33 ||| ! ! ... :::||| ! !!.!|||!::.!!|||!:! !!! |||: GluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrGlyL 212858 : GAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTT : 212915 34 : alTrpProLeuAlaLeuCysGluThrArgArgGluLysLeuGlyCysAlaIleValAl : 52 !!|||||| ! !! !! !! :!!! !! !|||||| ! !..! !:!:||| euTrpProAspLysSerTyrValSerProIleGluLysAsnIleAlaArgLeuValAs 212916 : TGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAA : 212972 53 : aAlaIleSerSerPheLeuLeuLeuPheLeuPheIleProCysIleLeuCysThrPhe : 71 !.!!:!!!!!! ! !|||:!! !!:!||| ! |||||||||! !|||! !..!||| nThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyrValPhe 212973 : TACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTC : 213029 72 : LeuMetLysThrAspLeuIleThrLysLeuArgPheGlyLeuGlyAlaSerThrTyrM : 91 ||| ! ::::::... ::::!!..!!!. !!!||| !! !.!!!:! LeuAspValGluAsnIlePheLysGluIleGluLeu---PheGlyIlePheAlaPheC 213030 : CTCGACGTAgagaatatatttaaagagaTCGAATTG---TTCGGCATTTTTGCATTTT : 213086 92 : etLeuMetAlaValAlaLysGlnTyrIleLeuLeuThrArgSerLysSerIleThrGl : 110 :!! |||:!! !||| ! :!! |||:!! !!.!.!! ! ..!||| ! ysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgTh 213087 : GCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTAC : 213143 111 : uCysIleIleGlnIleArgLysAspTrpAspArgIleMetLeuAlaArgGluThrAsp : 129 !|||:!! !!.!!:!:! ! |||||| ! !.!||| .!!!.!||| !||| rCysValGluHisMetLysTyrAspTrpLysAsnIle------ThrHisGluGluAsp 213144 : GTGTGTCGAGCATATGAAATATGACTGGAAGAATATC------ACGCACGAGGAGGAC : 213194 130 : LeuGluIleMetLeuAspAsnValLysPheGlyArgArgLeuSerIleValCysThrV : 149 !||||||||| ! |||!.!!..||||||!:!|||:!! !! !:!!|||.!! LysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaP 213195 : AAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTT : 213254 150 : alSerMetTyrThrAlaHisValLeuArgAsnValLeuProPheValLysProArgTh : 168 !!! !|||||||||!.! !..!!!! ! !:!!:!! ! :!!!.. !! !! hePheMetTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLy 213255 : TCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAA : 213311 169 : rGlnIleIleGly<-><->AsnGluThrValArgLeuLeuLeuTyrProValTyrArg : 185 !..!:!! ! ! |||! !||| !!|||! !:!!:!! !||||||! ||| sMetValAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSerArg 213312 : AATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGA : 213368 186 : GlyLeuPheAspValArgAsnSerProTyrPheGluIleThrGlnIleValGlnMetM : 205 !:!! !!||||||||| !!|||||| !|||||| ! :!::!!|||!!:! PheIleValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleI 213369 : TTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTA : 213428 206 : etGlyGlyTyrValIleTyrThrLeuThrIleSerAlaCysSerIleAlaAlaValPh : 224 !:!.!||| :!!|||:!!.!!:!!.!!:!: !|||||||||:!:||||||||||| leAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPh 213429 : TAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTT : 213485 225 : eValMetHisThrArgGlyGlnIleArgIleLeuMetLeuLysMetAspAspLeuAla : 243 |!.!:!:|||.!! !!||||||!!: !!||||||||| ! !:!!!!: !!||| ! eAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIle 213486 : TGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATA : 213542 244 : AspGlyLysLysArgGlnSer : 250 ||||||!:!:!! !..!||| AspGlyArgGluAspMetSer 213543 : GACGGTAGAGAGGATATGAGC : 213565 vulgar: CbirOr27 13 250 . KQ414889.1 212857 213565 + 256 M 70 210 G 1 0 M 38 114 G 2 0 M 48 144 G 0 6 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212858 213565 256 + . gene_id 9 ; sequence CbirOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212858 213565 . + . KQ414889.1 exonerate:protein2genome:local exon 212858 213565 . + . insertions 6 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 212858 213565 256 + . alignment_id 9 ; Query CbirOr27 ; Align 212858 14 210 ; Align 213068 85 114 ; Align 213182 125 144 ; Align 213332 173 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 247 Query range: 18 -> 271 Target range: 266637 -> 267387 19 : TyrThrIleGlnMetThrArgPhePheLeuArgThrIleGlyValTrpProLeuAlaL : 38 |||!:!:!:|||:!!!.!|||!::||||||!:! !!||||||!.!||||||! ! !! TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuS 266638 : TACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGT : 266695 39 : euCysGluThrArgArgGluLysLeuGlyCysAlaIleValAlaAlaIleSerSerPh : 57 ! ! !:!!!:!! !|||::!:!!! !! ! ! !:!! !!.!|||!!!! !! erLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCy 266696 : CACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTG : 266752 58 : eLeuLeuLeuPheLeuPheIleProCysIleLeuCysThrPheLeuMetLysThrAsp : 76 !! !:!!|||||| ! ! |||||||||:!:!!! ! ! !!||| ! ! !..! sSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSer 266753 : CTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGT : 266809 77 : LeuIleThrLysLeuArgPheGlyLeuGlyAlaSerThrTyrMetLeuMetAlaValA : 96 :!! !||||||:!!!:! ! !!!||| !! !!:!:!! !!!!:!:!.!! ! IleArgThrLysValLysVal---PheGlyProLeuSerHisTrpPheValGlyGlyI 266810 : ATCCGTACGAAAGTGAAGGTG---TTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 97 : laLysGlnTyrIleLeuLeuThrArgSerLysSerIleThrGluCysIleIleGlnIl : 115 !!!. ! !! !|||||| !|||||||||..!||| !! |||:!! !!.!! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 116 : eArgLysAspTrpAspArgIleMetLeuAlaArgGluThrAspLeuGluIleMetLeu : 134 :!:!! !|||||| !!::!!.!!||| ! !||| !:!!:!:|||||| tGlnThrAspTrpArg------IleValThrArgProGluAspLysGlnValMetLeu 266924 : GCAAACAGATTGGAGG------ATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTG : 266974 135 : AspAsnValLysPheGlyArgArgLeuSerIleValCysThrValSerMetTyrThrA : 154 ! |||!.!!:!.!!|||||| !:!!:!!||| !!|||.!!!.!! !||| ! !! LysAsnAlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysG 266975 : AAGAACGCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCG : 267034 155 : laHisValLeuArgAsnValLeuProPheValLysProArgThrGlnIleIleGlyAs : 173 .! !:!! ! ! !|||:!! !! !!! !!:!||| ! !:!!||||| lyValLeuGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAs 267035 : GTGTTCTCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAA : 267091 174 : nGluThr<-><->ValArgLeuLeuLeuTyrProValTyrArgGlyLeuPheAspVal : 190 ||||||| |||!.!||||||! !! ! !!||||||!:! !:!!.!!! ||| nGluThrArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaVal 267092 : CGAGACTAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTT : 267148 191 : ArgAsnSerProTyrPheGluIleThrGlnIleValGlnMetMetGlyGlyTyrValI : 210 !!.!|||||| !||||||..!! :!! !|||.!.:!:..!|||!:!:!!: AspThrSerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleV 267149 : GATACCAGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCG : 267208 211 : leTyrThrLeuThrIleSerAlaCysSerIleAlaAlaValPheValMetHisThrAr : 229 !: !!:!! !..!:!!.!!|||! !|||:!!||||||||||||!.! |||.!! ! alAsnSerSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCy 267209 : TGAATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTG : 267265 230 : gGlyGlnIleArgIleLeuMetLeuLysMetAspAspLeuAlaAspGlyLysLysArg : 248 !||||||:!:!!!:!:||||||:!! !!!: ! !!:!!!!.!:!! ::!...||| sGlyGlnLeuSerValLeuMetMetTrpIleLysGluPheValAsn---ArgSerArg 267266 : CGGACAGCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAAC---CGATCCAGA : 267319 249 : GlnSerAlaCysAsnThrThrSerAlaGlnArgLeuGlyAspIleValArgSerHisV : 268 .!.||| ! ||| ..!!!! !.!.!:!:!!|||! :!!|||..! !|||: AspSerAsnLysAsn---ValCysPheAspLysIleGlyValValValGluHisHisL 267320 : GATAGCAATAAGAAC---GTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATC : 267376 269 : alSerIleLeu : 271 !!!!!:!!||| euArgValLeu 267377 : TGAGAGTTTTG : 267387 vulgar: CbirOr27 18 271 . KQ414889.1 266637 267387 + 247 M 65 195 G 1 0 M 36 108 G 2 0 M 53 159 G 0 6 M 69 207 G 1 0 M 8 24 G 1 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266638 267387 247 + . gene_id 10 ; sequence CbirOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266638 267387 . + . KQ414889.1 exonerate:protein2genome:local exon 266638 267387 . + . insertions 6 ; deletions 5 KQ414889.1 exonerate:protein2genome:local similarity 266638 267387 247 + . alignment_id 10 ; Query CbirOr27 ; Align 266638 19 195 ; Align 266833 85 108 ; Align 266941 123 159 ; Align 267106 176 207 ; Align 267313 246 24 ; Align 267337 255 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 247 Query range: 18 -> 250 Target range: 274383 -> 275076 19 : TyrThrIleGlnMetThrArgPhePheLeuArgThrIleGlyValTrpProLeuAlaL : 38 |||!:!:!:|||:!!!.!|||!::||||||!:! !!||||||!.!||||||||||||! TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaS 274384 : TACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCT : 274441 39 : euCysGluThrArgArgGluLysLeuGlyCysAlaIleValAlaAlaIleSerSerPh : 57 ! ! |||!:! !|||::!:!! !! !:::::: ::: !! erProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCy 274442 : CGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTG : 274498 58 : eLeuLeuLeuPheLeuPheIleProCysIleLeuCysThrPheLeuMetLysThrAsp : 76 !!!!:!!|||! ! ! !!|||||| !!|||!!! !! !.!.|||:!: ! !..! sPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGluSer 274499 : CTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGT : 274555 77 : LeuIleThrLysLeuArgPheGlyLeuGlyAlaSerThrTyrMetLeuMetAlaValA : 96 ||| ! !||||||!:!!!. |||||| !! ! !:!! !!!!!!:!.!! ! LeuHisLeuLysLeuLysLeu---LeuGlyProLeuGlyHisTrpPheIleGlyGlyI 274556 : CTCCATCTGAAGCTGAAGTTG---CTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAA : 274612 97 : laLysGlnTyrIleLeuLeuThrArgSerLysSerIleThrGluCysIleIleGlnIl : 115 !!!. ! !! |||||| !|||||||||..!||| !! |||:!: !!.!! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 274613 : TTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACAT : 274669 116 : eArgLysAspTrpAspArgIleMetLeuAlaArgGluThrAspLeuGluIleMetLeu : 134 :!:!! !|||||| !!::!!.!!||| ! !|||! !:!!:!:|||||| tGlnThrAspTrpArg------IleValThrArgProGluAspGlnGlnValMetLeu 274670 : GCAAACAGATTGGAGG------ATCGTGACCAGACCGGAGGATCAACAAGTGATGTTG : 274720 135 : AspAsnValLysPheGlyArgArgLeuSerIleValCysThrValSerMetTyrThrA : 154 ! |||!.!|||.!!|||||| !:!!:!!||| !!|||.!!!.!! !||| ! !! LysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysG 274721 : AAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCG : 274780 155 : laHisValLeuArgAsnValLeuProPheValLysProArgThrGlnIleIleGlyAs : 173 .! !:!!! ! ! !|||:!! !! !!! !!:!||| !:!!||||| lyValLeuCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAs 274781 : GTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAA : 274837 174 : nGlu<-><->ThrValArgLeuLeuLeuTyrProValTyrArgGlyLeuPheAspVal : 190 |||| ||||||!.!:!!|||! !! ! !!.!|||!:! !:!! !!! ||| nGluThrArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaVal 274838 : CGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTG : 274894 191 : ArgAsnSerProTyrPheGluIleThrGlnIleValGlnMetMetGlyGlyTyrValI : 210 !!..|||||| !||||||..!! ! !|||.!.:!!..!|||!:!:!!: AspThrSerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleV 274895 : GACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCG : 274954 211 : leTyrThrLeuThrIleSerAlaCysSerIleAlaAlaValPheValMetHisThrAr : 229 !: !!:!! !.!!:!!.!!|||! !|||:!!||||||||||||!.! |||.!! alAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTy 274955 : TGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTA : 275011 230 : gGlyGlnIleArgIleLeuMetLeuLysMetAspAspLeuAlaAspGlyLysLysArg : 248 !||||||:!:!!!:!:||||||:!! !!!: !!!:!!!!.!:!! !...!:! rGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAsp 275012 : CGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAt : 275068 249 : GlnSer : 250 |||::: GlnAsn 275069 : cagaat : 275076 vulgar: CbirOr27 18 250 . KQ414889.1 274383 275076 + 247 M 65 195 G 1 0 M 36 108 G 2 0 M 52 156 G 0 6 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274384 275076 247 + . gene_id 11 ; sequence CbirOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274384 275076 . + . KQ414889.1 exonerate:protein2genome:local exon 274384 275076 . + . insertions 6 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 274384 275076 247 + . alignment_id 11 ; Query CbirOr27 ; Align 274384 19 195 ; Align 274579 85 108 ; Align 274687 123 156 ; Align 274849 175 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 244 Query range: 342 -> 410 Target range: 280276 -> 280551 343 : CysLeuGluIleGlyIleLysSerTyrMetIleAspTrpTyrArgLeuProGlyLysG : 362 ||||||:!!:!!|||:!:..!!!!|||||||||||||||||||||||||||||||||: CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysL 280277 : TGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGA : 280334 363 : luGlyLeuGlyIleMetLeuMetMetGlnMetSerAsnAlaThrIleLysLeuThrAl : 381 !!!.!! !|||:!:!!:|||!!:.!. :!!||||||:!!:!!|||||||||||||| ysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 280335 : AAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 280391 382 : aGlyLysPheMetAspLeuSerLeuAlaSerPheCysSer >>>> Target Intr : 395 |||||||.!!!!:||||||||||||::!|||||||||||| 71 bp aGlyLysIleIleAspLeuSerLeuSerSerPheCysSer++ 280392 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt................ : 280435 396 : on 1 >>>> IleMetLysThrAlaLeuAlaTyrLeuAsnLeuLeuArgThrPheTh : 410 :!::!:|||||||||!!!|||||||||!:!||||||||||||.!!|| ++ValLeuLysThrAlaPheAlaTyrLeuSerLeuLeuArgThrLeuTh 280436 : .........agGTGTTAAAAACGGCATTCGCATATCTGAGCTTATTACGTACGCTTAC : 280549 411 : r : 410 | r 280550 : C : 280551 vulgar: CbirOr27 342 410 . KQ414889.1 280276 280551 + 244 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280277 280551 244 + . gene_id 12 ; sequence CbirOr27 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280551 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280277 280551 244 + . alignment_id 12 ; Query CbirOr27 ; Align 280277 343 156 ; Align 280504 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 234 Query range: 18 -> 236 Target range: 262849 -> 263500 19 : TyrThrIleGlnMetThrArgPhePheLeuArgThrIleGlyValTrpProLeuAlaL : 38 |||!:!:!:|||!!:!.!|||!::.!.|||!:! !!||||||!.!|||||||||:!! TyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerA 262850 : TACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCG : 262907 39 : euCysGluThrArgArgGluLysLeuGlyCysAlaIleValAlaAlaIleSerSerPh : 57 !! :!!|||! !|||::!:!! !!! !:!!:!! !!.!:!!!!!! !! laSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCy 262908 : CCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTG : 262964 58 : eLeuLeuLeuPheLeuPheIleProCysIleLeuCysThrPheLeuMetLysThrAsp : 76 !|||:!!|||! ! ! !!||||||! !|||||| !! ! !!||| !:!! sLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsn 262965 : TCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAAT : 263021 77 : LeuIleThrLysLeuArgPheGlyLeuGlyAlaSerThrTyrMetLeuMetAlaValA : 96 !!! !! !||||||!:! !! |||||| !! ! ! ! !!!!:!:!.!:!! PheHisMetLysLeuGlnVal---LeuGlyProLeuGlyGlnTrpPheValGlyMetI 263022 : TTCCATATGAAGCTGCAGGTT---CTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 97 : laLysGlnTyrIleLeuLeuThrArgSerLysSerIleThrGluCysIleIleGlnIl : 115 !!!. ! ! |||||| !!.!||||||..!||| !! |||:!: !!!.:! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 116 : eArgLysAspTrpAspArgIleMetLeuAlaArgGluThrAspLeuGluIleMetLeu : 134 :!:!:!!|||||| !!!::!!.!!||| ! !|||! !...||||||||| lGlnGluAspTrp------CysIleValThrArgLeuGluAspGlnArgIleMetLeu 263136 : GCAGGAAGACTGG------TGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTG : 263186 135 : AspAsnValLysPheGlyArgArgLeuSerIleValCysThrValSerMetTyrThrA : 154 ! |||!.!|||!:!|||||| !:!!:!! ! !|||.!!:!!! !||| ! |||: LysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrS 263187 : AAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGA : 263246 155 : laHisValLeuArgAsnValLeuProPheValLysProArgThrGlnIleIleGlyAs : 173 :! !:!!! !!:! !:!!:!! !! !!! !!!:!..! !||||| erIleMetCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAs 263247 : GCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAA : 263303 174 : nGluThr<-><->ValArgLeuLeuLeuTyrProValTyrArgGlyLeuPheAspVal : 190 ||||||| :!!|||:!!|||! !! !|||||||||!:!! !:!!.!! ||| nGluThrArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProVal 263304 : CGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTC : 263360 191 : ArgAsnSerProTyrPheGluIleThrGlnIleValGlnMetMetGlyGlyTyrValI : 210 !!..!:!||| !|||||| !! !..!|||.!.:!!..!|||!:!:!!: AspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleV 263361 : GACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCG : 263420 211 : leTyrThrLeuThrIleSerAlaCysSerIleAlaAlaValPheValMetHisThrAr : 229 !! !.!! !|||:!!.!!|||! !.!!!!:.!!|||||||||!.! |||.!! ! alThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCy 263421 : TCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTG : 263477 230 : gGlyGlnIleArgIleLeuMet : 236 !||||||:!:!.!:!:|||||| sGlyGlnLeuAsnValLeuMet 263478 : CGGACAGTTGAACGTGTTGATG : 263500 vulgar: CbirOr27 18 236 . KQ414889.1 262849 263500 + 234 M 65 195 G 1 0 M 35 105 G 2 0 M 54 162 G 0 6 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262850 263500 234 + . gene_id 13 ; sequence CbirOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262850 263500 . + . KQ414889.1 exonerate:protein2genome:local exon 262850 263500 . + . insertions 6 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 262850 263500 234 + . alignment_id 13 ; Query CbirOr27 ; Align 262850 19 195 ; Align 263045 85 105 ; Align 263150 122 162 ; Align 263318 176 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 233 Query range: 128 -> 247 Target range: 304449 -> 304809 129 : AspLeuGluIleMetLeuAspAsnValLysPheGlyArgArgLeuSerIleValCysT : 148 |||! !|||!!:|||||| ! !!! !:!!.!.||||||!.!|||!!!|||:!!|||. AspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIleCysA 304450 : GATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAATCTGCG : 304507 149 : hrValSerMetTyrThr<->AlaHisValLeuArgAsnValLeuProPheValLysPr : 166 !!:!!! !||||||||| !.! !:!!! !!.!!..|||:!!! !|||!.!! laIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheAlaThrGl 304508 : CCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCGACCGG : 304564 167 : oArgThrGlnIleIleGlyAsnGluThrValArgLeuLeuLeuTyrProValTyrArg : 185 !! ! ! ! ! !|||...|||:!!!:!! !|||:!!||||||..!|||!!! yThrTyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProThrTyrSer 304565 : AACGTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACCTACAGT : 304621 186 : GlyLeuPheAspValArgAsnSerProTyrPheGluIleThrGlnIleValGlnMetM : 205 !.!||||||||||||!:!!..|||||| !!:!|||:!:..! ! .!!|||!!. | AlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheValHisCysM 304622 : GCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCATTGCA : 304681 206 : etGlyGlyTyrValIleTyrThrLeuThrIleSerAlaCysSerIleAlaAlaValPh : 224 || !!|||||||||||||||:!!:!!||| !.!!||||||.!!:!!||||||:!!|| etCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPh 304682 : TGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTT : 304738 225 : eValMetHisThrArgGlyGlnIleArgIleLeuMetLeuLysMetAspAspLeuAla : 243 |!.!! |||.!! !!||||||||| !|||:!!|||! !::!:!!! !||||||!.! eAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAspLeuVal 304739 : CGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGATCTTGTC : 304795 244 : AspGlyLysLys : 247 :!!.!!|||:!! AsnSerLysGlu 304796 : AACAGCAAAGAA : 304809 vulgar: CbirOr27 128 247 . KQ414889.1 304449 304809 + 233 M 25 75 G 0 3 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304450 304809 233 + . gene_id 14 ; sequence CbirOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304450 304809 . + . KQ414889.1 exonerate:protein2genome:local exon 304450 304809 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304450 304809 233 + . alignment_id 14 ; Query CbirOr27 ; Align 304450 129 75 ; Align 304528 154 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 217 Query range: 306 -> 395 Target range: 219331 -> 219671 307 : TrpGluGlnArgLysThrIleGluThrIleThrPhePheLeuIleValThrCysPheT : 326 |||:!!..!!.! ! ..!! ....!!:!:|||!:!.!!:!!:!!:!!! !! !.!.| TrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerLeuT 219332 : TGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCCTca : 219389 327 : hrPheAsnThrPheIlePheCysTyrIleGlyAspValLeuAlaGluGlu >>>> T : 343 |||||||| |||||||||||||||||||||!!::!!:!!||||||:!: hrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln++ 219390 : ctttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAggt...... : 219442 344 : arget Intron 1 >>>> CysLeuGluIleGlyIleLysSerTyrMetIleAspT : 355 73 bp ||| :::|||||| ||||||||||||!!:| ++CysArgLysIleGlyGluMetSerTyrMetIleGluT 219443 : ...................agTGtaggaaaattggagaaatgtCGTACATGATCGAAT : 219549 356 : rpTyrArgLeuProGlyLysGluGlyLeuGlyIleMetLeuMetMetGlnMetSerAs : 374 ||||||||||| !!||||||:!! !||| !!! !:!:|||! !!: |||||||| rpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaMetSerAs 219550 : GGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTATGTCGAA : 219606 375 : nAlaThrIleLysLeuThrAlaGlyLysPheMetAspLeuSerLeuAlaSerPheCys : 393 |:!!:!!||||||||||||||||||!!..!.:!:!!:||||||:!!::!!!!||| ! nSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerThrPheThr 219607 : TTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCACTTTTACC : 219663 394 : SerIle : 395 ..!:!: AspVal 219664 : GACGTG : 219671 vulgar: CbirOr27 306 395 . KQ414889.1 219331 219671 + 217 M 36 108 5 0 2 I 0 69 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219332 219671 217 + . gene_id 15 ; sequence CbirOr27 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 219332 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219332 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219332 219671 217 + . alignment_id 15 ; Query CbirOr27 ; Align 219332 307 108 ; Align 219513 343 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 207 Query range: 342 -> 409 Target range: 287063 -> 287264 343 : CysLeuGluIleGlyIleLysSerTyrMetIleAspTrpTyrArgLeuProGlyLysG : 362 ||||||:!!:!!|||:!:..!!!!||||||||||||||||||||||||||||||||| CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysT 287064 : tGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAA : 287121 363 : luGlyLeuGlyIleMetLeuMetMetGlnMetSerAsnAlaThrIleLysLeuThrAl : 381 !!.!! !|||:!:!!:|||!!:.!. :!!||||||:!!:!!|||||||||||||| hrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 287122 : CAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 287178 382 : aGlyLysPheMetAspLeuSerLeuAlaSerPheCysSerIleMetLysThrAlaLeu : 400 |||||||.!!!!:||||||||||||::!||||||||||||:!:! ! ! ! !||| aGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeu 287179 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTA : 287235 401 : AlaTyrLeuAsnLeuLeuArgThrPhe : 409 :!!|||! !:!!|||! ...||| SerTyrTyrHisLeuTyrAspAsnPhe 287236 : TCCTATTATCATTTGTacgataatttt : 287264 vulgar: CbirOr27 342 409 . KQ414889.1 287063 287264 + 207 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287064 287264 207 + . gene_id 16 ; sequence CbirOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287064 287264 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287264 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287064 287264 207 + . alignment_id 16 ; Query CbirOr27 ; Align 287064 343 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 203 Query range: 307 -> 392 Target range: 234809 -> 235138 308 : GluGlnArgLysThrIleGluThrIleThrPhePheLeuIleValThrCysPheThrP : 327 :!!:!!!::... ::: !:!!!:! !!:!!:!: !..!! !.!.|||| GlnGluLysSerLysGluLysLeuAlaSerTyrValIleValTyrValSerMetThrP 234810 : CAGGAAAAgtcgaaggaaaaattagCTTCATACGTCATCGTGTACGTGTCCATGACAT : 234867 328 : heAsnThrPheIlePheCysTyrIleGlyAspValLeuAlaGluGlu >>>> Targ : 343 ||||| |||||||||||||||||||||!!:..!|||.!!|||:!! heAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGln++ 234868 : TtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGCAGgt......... : 234917 344 : et Intron 1 >>>> CysLeuGluIleGlyIleLysSerTyrMetIleAspTrpT : 356 74 bp ||| !:!!:!!||| !||| !||||||! !!!:|||| ++CysThrLysValGlyGluLysValTyrMetThrGluTrpT 234918 : ................agTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGT : 235028 357 : yrArgLeuProGlyLysGluGlyLeuGlyIleMetLeuMetMetGlnMetSerAsnAl : 375 ||||||||||| !||| !.!||||||:!::!::!!!!:!!:...! !|||!:! yrArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMe 235029 : ACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCAT : 235085 376 : aThrIleLysLeuThrAlaGlyLysPheMetAspLeuSerLeuAlaSerPhe : 392 !..!||||||:!!|||||||||||||||:!:.!.:!!|||:!!|||!!!||| tValIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPhe 235086 : GGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTT : 235138 vulgar: CbirOr27 307 392 . KQ414889.1 234809 235138 + 203 M 35 105 5 0 2 I 0 70 3 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234810 235138 203 + . gene_id 17 ; sequence CbirOr27 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234810 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234810 234914 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235138 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235138 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234810 235138 203 + . alignment_id 17 ; Query CbirOr27 ; Align 234810 308 105 ; Align 234989 343 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 195 Query range: 19 -> 250 Target range: 226933 -> 227623 20 : ThrIleGlnMetThrArgPhePheLeuArgThrIleGlyValTrpProLeuAlaLeuC : 39 !:!||||||:!!!.!|||!::.!.|||!:! !!:!!|||:!!||||||! !:!!! ! SerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgL 226934 : AGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCA : 226991 40 : ysGluThrArgArgGluLysLeuGlyCysAlaIleValAlaAlaIleSerSerPheLe : 58 ...:!!|||! !! !!:!! ! !! ! !:!::!!!.! !:!!!!!! ! || ysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLe 226992 : AAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCT : 227048 59 : uLeuLeuPheLeuPheIleProCysIleLeuCysThrPheLeuMetLysThrAspLeu : 77 |:!! !||| !!!.:!! !! !! !|||! !..! !!||| ! !! !! ! ! uMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAla 227049 : GATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCT : 227105 78 : IleThrLysLeuArgPheGlyLeuGlyAlaSerThrTyrMetLeuMetAlaValAlaL : 97 !!.!! !|||!:!.!. :!!||| !!! !:!!!:!.!. !|||:!!:!! !| TyrAsnThrLeuLysMet---IleGlyProMetSerPhePheAlaMetSerLeuLeuL 227106 : TACAACACGCTGAAAATG---ATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCA : 227162 98 : ysGlnTyrIleLeuLeuThrArgSerLysSerIleThrGluCysIleIleGlnIleAr : 116 || ! ! !!!:||| ! !!.!..! ! ..!||| !||||||:!! !!:!|||!: ysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIleLy 227163 : AGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAA : 227219 117 : gLysAspTrpAspArgIleMetLeuAlaArgGluThrAspLeuGluIleMetLeuAsp : 135 ! !|||||| ! !.!|||! ! ! !..! ||| !.!.:!:|||:!! sTrpAspTrpLysAsnIleArgTyrLeuGlu------AspArgAsnValMetValThr 227220 : ATGGGACTGGAAGAATATCAGATACCTGGAG------GACAGAAACGTGATGGTGACG : 227270 136 : AsnValLysPheGlyArgArgLeuSerIleValCysThrValSerMetTyrThrAlaH : 155 !!!.! ! !:!||||||!:!|||! !! !:!!|||||| !!! !:!:!:!!::::: TyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerP 227271 : TACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtt : 227330 156 : isValLeuArgAsnValLeuProPheValLysProArgThrGlnIleIle<-><->Gl : 172 |||... :!!:!! ! !:!!!!. !! !!!:! !! || heValPhePheTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGl 227331 : tcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGG : 227387 173 : yAsnGluThrValArgLeuLeuLeuTyrProValTyrArgGlyLeuPheAspValArg : 191 ||||.!.!:! !! !! !:!!! !!:!||| !! !:! !:!! !||||||||| yAsnHisSerTyrIleGlnMetProPheProPheProLysIleIleAlaAspValArg 227388 : AAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGT : 227444 192 : AsnSerProTyrPheGluIleThrGlnIleValGlnMetMetGlyGlyTyrValIleT : 211 !!||||||!:! !|||||| ! ||||||.!.:!: !||| !|||:!:: TyrSerProPheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuH 227445 : TACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGC : 227504 212 : yrThrLeuThrIleSerAlaCysSerIleAlaAlaValPheValMetHisThrArgGl : 230 !! !:!!||| !:!!|||||||||!!:||||||:!!.!!!.!:!:|||.!! !!|| isGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGl 227505 : ACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGG : 227561 231 : yGlnIleArgIleLeuMetLeuLysMetAspAspLeuAlaAspGlyLysLysArgGln : 249 ||||!!:..!:!:|||:!!! ! !:!!! !!||| !||||||!:! ! !..! yGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGlyArgAlaAspMet 227562 : TCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGCAGAGCGGATATG : 227618 250 : Ser : 250 ||| Ser 227619 : AGC : 227623 vulgar: CbirOr27 19 250 . KQ414889.1 226933 227623 + 195 M 64 192 G 1 0 M 42 126 G 2 0 M 43 129 G 0 6 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226934 227623 195 + . gene_id 18 ; sequence CbirOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226934 227623 . + . KQ414889.1 exonerate:protein2genome:local exon 226934 227623 . + . insertions 6 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 226934 227623 195 + . alignment_id 18 ; Query CbirOr27 ; Align 226934 20 192 ; Align 227126 85 126 ; Align 227252 129 129 ; Align 227387 172 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 306 -> 404 Target range: 291371 -> 292578 307 : TrpGluGlnArgLysThrIleGluThrIleThrPhePheLeuIleValThrCysPheT : 326 ||||||...!!! ! :!!|||! !! !:!!|||!:! !! !:!!:!!|||! !|||| TrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerPheT 291372 : TGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTTTCA : 291429 327 : hrPheAsnThrPheIlePheCysTyrIleGlyAspValLeuAlaGluGlu >>>> T : 343 ||||||||! !.!.||||||||||||:!!|||!!::!!||| !! !:!! hrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln++ 291430 : CTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAGgt...... : 291482 344 : arget Intron 1 >>>> CysLeuGluIleGlyIleLysSerTyrMetIleAspT : 355 913 bp !! !||||||!.! ! |||||| ! !!!:| ++GlySerGluIleAlaHisAlaSerTyrAspThrGluT 291483 : ...................agGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAAT : 292429 356 : rpTyrArgLeuProGlyLysGluGlyLeuGlyIleMetLeuMetMetGlnMetSerAs : 374 |||||!.!|||||| !!::!:!!!.!! !! !|||:!:|||:!!:!: !!:!!!!! rpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLy 292430 : GGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAA : 292486 375 : nAlaThrIleLysLeuThrAlaGlyLysPheMetAspLeuSerLeuAlaSerPheCys : 393 . ! !!|||||||||||||||||||||.!..!.! !||||||||| !!!!||| !! sHisProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPheGly 292487 : ACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGC : 292543 394 : SerIleMetLysThrAlaLeuAlaTyrLeuAsn : 404 :!!:!! :!!:!! !|||!.!! :!!:!! AlaValArgGluSerLysLeuValLeuIleHis 292544 : GCTGTACGTGAATCAAAACTAGTCTTGATACAC : 292578 vulgar: CbirOr27 306 404 . KQ414889.1 291371 292578 + 183 M 36 108 5 0 2 I 0 909 3 0 2 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291372 292578 183 + . gene_id 19 ; sequence CbirOr27 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291372 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291372 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291372 292578 183 + . alignment_id 19 ; Query CbirOr27 ; Align 291372 307 108 ; Align 292393 343 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 337 -> 395 Target range: 214848 -> 215022 338 : ValLeuAlaGluGluCysLeuGluIleGlyIleLysSerTyrMetIleAspTrpTyrA : 357 :!!:!! !:!!:!!||| !:!!:!!||| ! !||||||||||||!!:||||||| IleMetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrA 214849 : ATTATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACC : 214906 358 : rgLeuProGlyLysGluGlyLeuGlyIleMetLeuMetMetGlnMetSerAsnAlaTh : 376 |||||||||||!!.:!! !||| !! !!!:|||!!:||| !|||||||||:!!:! rgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSe 214907 : GATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATC : 214963 377 : rIleLysLeuThrAlaGlyLysPheMetAspLeuSerLeuAlaSerPheCysSerIle : 395 !:!!|||!!!|||||||||!!..!.:!:!!:||||||:!!::!!!!||| !!|||:!! rValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214964 : CGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215020 vulgar: CbirOr27 337 395 . KQ414889.1 214848 215022 + 158 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214849 215022 158 + . gene_id 20 ; sequence CbirOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214849 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214849 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214849 215022 158 + . alignment_id 20 ; Query CbirOr27 ; Align 214849 338 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 341 -> 407 Target range: 258462 -> 258729 342 : GluCysLeuGluIleGlyIleLysSerTyrMetIleAspTrpTyrArgLeuProGlyL : 361 :!!||| !:!!:!!||| ! ! !||||||! !||||||||| !||||||! !| GlnCysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspL 258463 : CAGTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACA : 258520 362 : ysGluGlyLeuGlyIleMetLeuMetMetGlnMetSerAsnAlaThrIleLysLeuTh : 380 ||..! !|||! !:!!!!:|||:!:!!: ! |||!:!!.!..!:!!:!!:!!|| ysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleTh 258521 : AAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCAC : 258577 381 : rAlaGlyLysPheMetAspLeuSerLeuAlaSerPheCysSer >>>> Target I : 395 |||||||||||||... ::!|||:!! !!!!||| !!..! 69 rAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAsp++ 258578 : CGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATgt............. : 258624 396 : ntron 1 >>>> IleMetLysThrAlaLeuAlaTyrLeuAsnLeuLeuArg : 407 bp :!!!!:||||||:!!!!!||||||||||||||||||||| ++ValIleLysThrSerPheAlaTyrLeuAsnLeuLeuArg 258625 : ............agGTAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGT : 258729 vulgar: CbirOr27 341 407 . KQ414889.1 258462 258729 + 152 M 53 159 5 0 2 I 0 65 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258463 258729 152 + . gene_id 21 ; sequence CbirOr27 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 258463 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258463 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258729 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258729 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258463 258729 152 + . alignment_id 21 ; Query CbirOr27 ; Align 258463 342 159 ; Align 258691 395 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 340 -> 410 Target range: 277548 -> 277842 341 : GluGluCysLeuGluIleGlyIleLysSerTyrMetIleAspTrpTyrArgLeuProG : 360 ..!:!!||| !:!!:!!||| ! !||||||! :!!|||||| !||||||! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 361 : lyLysGluGlyLeuGlyIleMetLeuMetMetGlnMetSerAsnAlaThrIleLysLe : 379 !|||!!: !|||..!:!::!:|||!!:!!:..!! |||!:! ...||||||:: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 380 : uThrAlaGlyLysPheMetAspLeuSerLeuAlaSerPheCysSer >>>> Targe : 395 :||||||||||||...:::...:::|||:!! !!!!||| !!..! eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAsp++ 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATgt.......... : 277713 396 : t Intron 1 >>>> IleMetLysThrAlaLeuAlaTyrLeuAsnLeuLeuArgTh : 408 84 bp :!!!!:||||||.!!!!!||||||||||||:::|||||| ++ValIleLysThrThrPheAlaTyrLeuAsnIleLeuArgGl 277714 : ...............agGTAATAAAAACCACTTTCgcgtatttaaatattctacgCCA : 277834 409 : rPheThr : 410 ! ||| nThrThr 277835 : AACGACG : 277842 vulgar: CbirOr27 340 410 . KQ414889.1 277548 277842 + 146 M 54 162 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277842 146 + . gene_id 22 ; sequence CbirOr27 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277549 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277842 146 + . alignment_id 22 ; Query CbirOr27 ; Align 277549 341 162 ; Align 277795 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 341 -> 410 Target range: 273014 -> 273302 342 : GluCysLeuGluIleGlyIleLysSerTyrMetIleAspTrpTyrArgLeuProGlyL : 361 :::||| :::|||||| ! !||||||! :!!|||||| !|||||||||| GlnCysLysLysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProGlyL 273015 : cagtgtaaaaaaattggcGAGGTAGTTTACATGACGAACTGGTACTATTTACCCGGCA : 273072 362 : ysGluGlyLeuGlyIleMetLeuMetMetGlnMetSerAsnAlaThrIleLysLeuTh : 380 ||!!: !|||! !:!:!!:|||!!:!!:..!! !!!!:!!.!..!||||||:!!|| ysAspIleLeuAspLeuIleLeuIleIleSerArgCysSerValValIleLysIleTh 273073 : AAGATATCCTCGATCTGATTTTGATCATCTCAAGATGCAGTGTTGTGATTAAAATCAC : 273129 381 : rAlaGlyLysPheMetAspLeuSerLeuAlaSerPheCysSer >>>> Target I : 395 |||||||!:!.!.:!: !:!!|||:!! !!!!||| !!..! 81 rAlaGlyArgIleValProMetSerValTyrThrPheGlyAsp++ 273130 : CGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTCGGCGATgt............. : 273176 396 : ntron 1 >>>> IleMetLysThrAlaLeuAlaTyrLeuAsnLeuLeuArgThrPh : 409 bp :::||||||!:!|||!!!||||||||||||:!!|||||| ! ++ValMetLysSerAlaPheAlaTyrLeuAsnMetLeuArgGlnTh 273177 : ............aggtGATGAAAAGTGCGTTCGCGTACTTAAATATGCTACGACAAAC : 273297 410 : eThr : 410 ||| rThr 273298 : GACA : 273302 vulgar: CbirOr27 341 410 . KQ414889.1 273014 273302 + 143 M 53 159 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 273015 273302 143 + . gene_id 23 ; sequence CbirOr27 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 273015 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273015 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 273015 273302 143 + . alignment_id 23 ; Query CbirOr27 ; Align 273015 342 159 ; Align 273255 395 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 341 -> 404 Target range: 230244 -> 230433 342 : GluCysLeuGluIleGlyIleLysSerTyrMetIleAspTrpTyrArgLeuProGlyL : 361 :!!||| !:!!:!!||| !|||||||||||||||!!:|||||||||||| !!|||! GlnCysArgLysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyA 230245 : CAGTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAA : 230302 362 : ysGluGlyLeuGlyIleMetLeuMetMetGlnMetSerAsnAlaThrIleLysLeuTh : 380 !.:!! !||| !! !!!:|||!!:!!: |||||||||..!:!!! |||!!!|| snLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheTh 230303 : ACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTAC : 230359 381 : rAlaGlyLysPheMetAspLeuSerLeuAlaSerPheCysSerIleMetLysThrAla : 399 |||||||!!..!.:!:!!:||||||:!! !!!!||| !!..!:!!! ! ! ! ! rAlaGlyAsnMetValGluLeuSerValAsnThrPheSerAspValSerIleIlePhe 230360 : AGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGACGTAAGTATCATATTC : 230416 400 : LeuAlaTyrLeuAsn : 404 ! !!.!||| !||| SerValTyrThrAsn 230417 : TCTGTTTACACGAAT : 230433 vulgar: CbirOr27 341 404 . KQ414889.1 230244 230433 + 137 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230245 230433 137 + . gene_id 24 ; sequence CbirOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230245 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230245 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230245 230433 137 + . alignment_id 24 ; Query CbirOr27 ; Align 230245 342 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 341 -> 401 Target range: 238625 -> 238805 342 : GluCysLeuGluIleGlyIleLysSerTyrMetIleAspTrpTyrArgLeuProGlyL : 361 :!!||||||:!!:!!||| ! ! !||||||! !||||||||| !|||||| !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 362 : ysGluGlyLeuGlyIleMetLeuMetMetGlnMetSerAsnAlaThrIleLysLeuTh : 380 :!..! !|||! !:!!!!:|||!!:!!::!! ||||||!.!..!:!!|||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 381 : rAlaGlyLysPheMetAspLeuSerLeuAlaSerPheCysSerIleMetLysThrAla : 399 |||||||||| ! :!: !!:!!|||||| !!!!||| !!..!:!!! :!!||| ! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 400 : LeuAla : 401 |||||| LeuAla 238798 : CTTGCT : 238805 vulgar: CbirOr27 341 401 . KQ414889.1 238625 238805 + 135 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238805 135 + . gene_id 25 ; sequence CbirOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238805 135 + . alignment_id 25 ; Query CbirOr27 ; Align 238626 342 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 172 -> 244 Target range: 300189 -> 300405 173 : AsnGluThrValArgLeuLeuLeuTyrProValTyrArgGlyLeuPheAspValArgA : 192 ||| ! ||| !!:!! !||| !||||||! !||| ! !!!!!.!!|||..!!:!! AsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnT 300190 : AATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAA : 300247 193 : snSerProTyrPheGluIleThrGlnIleValGlnMetMetGlyGlyTyrValIleTy : 211 .!|||||| !!:!||||||... ... ... .!.!.!!.! :!!!!:|| hrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTy 300248 : CCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTA : 300304 212 : rThrLeuThrIleSerAlaCysSerIleAlaAlaValPheValMetHisThrArgGly : 230 |!.!:!!|||! :!!|||! !|||:!:||||||:!!||||||! |||! ! !!||| rAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGly 300305 : CAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGA : 300361 231 : GlnIleArgIleLeuMetLeuLysMetAspAspLeuAlaAsp : 244 ||||||!:!|||! !||| !!:!:!!!!:||||||!.!!!: GlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGlu 300362 : CAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAG : 300405 vulgar: CbirOr27 172 244 . KQ414889.1 300189 300405 + 135 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300190 300405 135 + . gene_id 26 ; sequence CbirOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 300190 300405 . + . KQ414889.1 exonerate:protein2genome:local exon 300190 300405 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300190 300405 135 + . alignment_id 26 ; Query CbirOr27 ; Align 300190 173 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 19 -> 198 Target range: 294690 -> 295224 20 : ThrIleGlnMetThrArgPhePheLeuArgThrIleGlyValTrpProLeuAlaLeuC : 39 !:!:!!:!! !||| .!.|||!:! !!||||||:!!||||||||| !! ! SerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrS 294691 : AGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACA : 294748 40 : ysGluThrArgArg<->GluLysLeuGlyCysAlaIleValAlaAlaIleSerSerPh : 57 !!.!.|||!!!!:! .!.|||:!! !! !|||:!! !||| !!!!!!!! erHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLe 294749 : GTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTT : 294805 58 : eLeuLeuLeuPheLeuPheIleProCysIleLeuCysThrPheLeuMetLysThrAsp : 76 . !:!!||||||:!!!!.:!:|||||| !! !! ! ! ! !!! ::: uThrValLeuPheValLeuValProCysGlyTyrPheCysValPheHisValLysAsn 294806 : GACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaac : 294862 77 : LeuIleThrLysLeuArgPheGlyLeuGlyAlaSerThrTyrMetLeuMetAlaValA : 96 ::: |||:!!!:!.!! |||||| !! ! !||| :!!:!::!!:!! ValLysLeuLysMetLysLeu---LeuGlyProValLeuTyrSerMetLeuSerMetL 294863 : gtgaaattgaaGATGAAACTT---CTGGGTCCGGTACTATACTCTATGCTCTCTATGC : 294919 97 : laLysGlnTyrIleLeuLeuThrArgSerLysSerIleThrGluCysIleIleGlnIl : 115 !!:! ! ! !|||:!! !!:!!!! :!!.!!! !.!.|||||| !.!.|| euArgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCysIleGluAspIl 294920 : TCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACAT : 294976 116 : eArgLysAspTrpAspArgIleMetLeuAlaArgGluThrAspLeuGluIleMetLeu : 134 |..!!!.|||||| ! :!!:!!! !!.! ! ! !!! !! !||||||:!! eGluAsnAspTrpLys------LeuIleAspAsnProGluHisArgAlaIleMetIle 294977 : AGAGAACGATTGGAAG------TTGATCGATAATCCGGAACACCGAGCGATCATGATC : 295027 135 : AspAsnValLysPheGlyArgArgLeuSerIleValCysThrValSerMetTyrThrA : 154 ! |||!.!! ! !! !!:!|||:!!!!!:!!!.!! !|||:!!! !!!:|||!:!: LysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleIleTyrSerS 295028 : AAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACAGTT : 295087 155 : laHisVal<->LeuArgAsnValLeuProPheValLysProArgThrGlnIleIleGl : 172 !! ||| ! !!.! !:!!:::|||||| ... !:!!! !! erAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGluAsnLysLy 295088 : CTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGAGAACAAGAA : 295144 173 : yAsnGluThrValArgLeuLeuLeuTyrProValTyrArgGlyLeuPheAspValArg : 191 !|||.!.|||:!!||| !|||! ! !|||! !|||..! !!!! ! |||!.! ! sAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheValAspAlaTyr 295145 : GAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCTTAT : 295201 192 : AsnSerProTyrPheGluIle : 198 ::!|||||| !!:!|||||| SerSerProThrTyrGluIle 295202 : TCCAGTCCTACCTACGAGATC : 295224 vulgar: CbirOr27 19 198 . KQ414889.1 294690 295224 + 133 M 24 72 G 0 3 M 40 120 G 1 0 M 36 108 G 2 0 M 34 102 G 0 3 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294691 295224 133 + . gene_id 27 ; sequence CbirOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294691 295224 . + . KQ414889.1 exonerate:protein2genome:local exon 294691 295224 . + . insertions 6 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 294691 295224 133 + . alignment_id 27 ; Query CbirOr27 ; Align 294691 20 72 ; Align 294766 44 120 ; Align 294886 85 108 ; Align 294994 123 102 ; Align 295099 157 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 341 -> 407 Target range: 264723 -> 265001 342 : GluCysLeuGluIleGlyIleLysSerTyrMetIleAspTrpTyrArgLeuProGlyL : 361 :!!||| !:!!:!!||| ! !|||||| :!!|||||| !|||||| !| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 362 : ysGluGlyLeuGlyIleMetLeuMetMetGlnMetSerAsnAlaThrIleLysLeuTh : 380 ||!!: !|||! !:!:!!:|||!!:!!: !! |||!:!!.!..!.!!|||!!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 381 : rAlaGlyLysPheMetAspLeuSerLeuAlaSerPheCysSer >>>> Target I : 395 ||||||||||.!.:!: !!:!!|||:!! !!!!||| !!..! 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 396 : ntron 1 >>>> IleMetLysThrAlaLeuAlaTyrLeuAsnLeuLeuArg : 407 bp :!!!!:|||:!!:!!!!!.!!|||||||||||||||||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArg 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGC : 265001 vulgar: CbirOr27 341 407 . KQ414889.1 264723 265001 + 130 M 53 159 5 0 2 I 0 76 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265001 130 + . gene_id 28 ; sequence CbirOr27 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265001 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265001 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265001 130 + . alignment_id 28 ; Query CbirOr27 ; Align 264724 342 159 ; Align 264963 395 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 345 -> 395 Target range: 206251 -> 206401 346 : IleGlyIleLysSerTyrMetIleAspTrpTyrArgLeuProGlyLysGluGlyLeuG : 365 :!:|||:!:! !|||! !! !:!::!!|||||||||||||||..!!:!.!.!.!! !. ValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgS 206252 : GTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCT : 206309 366 : lyIleMetLeuMetMetGlnMetSerAsnAlaThrIleLysLeuThrAlaGlyLysPh : 384 .!!!:!!:|||!!:!!: ||||||||| ! !!|||||||||||||||||||||.! erMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMe 206310 : CTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAAT : 206366 385 : eMetAspLeuSerLeuAlaSerPheCysSerIle : 395 ..!.!!::!!||||||||||||||| !..!:!! tPheGluMetSerLeuAlaSerPheThrAspVal 206367 : GTTCGAAATGTCTTTAGCTAGTTTCACCGATGTA : 206401 vulgar: CbirOr27 345 395 . KQ414889.1 206251 206401 + 129 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206252 206401 129 + . gene_id 29 ; sequence CbirOr27 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206252 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206252 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206252 206401 129 + . alignment_id 29 ; Query CbirOr27 ; Align 206252 346 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 844 Query range: 18 -> 394 Target range: 232450 -> 235147 19 : AspAsnGluTyrSerIleGlnIleIleArgTrpIleLeuLysThrIleAsnLeuTrpP : 38 ||| !!|||||||||||||||:!:! !||||||.!!|||! ! !!!!:..! !|||| AspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpP 232451 : GACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGC : 232508 39 : roGlnProProGlyAlaSerIleIleLysLysIleArgSerGluPheLeuIleLeuTh : 57 ||!:: ! !!! !.!!|||! ! !:!!:!!:!!! !:!!:!!.!.|||! !||||| roArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuTh 232509 : CGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCAC : 232565 58 : rCysTyrCysLeuMetPheGlyThrMetValProSerGlyLeuSerIlePheIleGlu : 76 ||||:!!! !||||||.!!..!:!!!!:||||||!!! !|||! !|||.!..!!||| rCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGlu 232566 : CTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAA : 232622 77 : SerGlnGluThrLeuAspValLysLeuArgSerPheGlyProLeuThrPheTrpPheM : 96 .!. !!:!|||!!:! !!:!:!!!:!|||.!!||||||:!!!:! !!::.!.| ---AspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuM 232623 : ---GACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGA : 232679 97 : etAlaMetIleAsnTyrSerCysLeuLeuLeuHisIleAspAspIleArgSerCysVa : 115 ||!.! :!:||||||!!!||||||||| ! ! :!!||||||! !! !||||| etGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysVa 232680 : TGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGT : 232736 116 : lGluHisMetLysAlaAspTrpArgIleValArgArgSerGluGluArgGlnValMet : 134 ||||!!.:!!||| !|||||||||! !|||!:!!:! !!! .!.|||.!.:!!||| lGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMet 232737 : GGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATG : 232793 135 : LeuLysAsnAlaArgIleGlyArgPheIleValGlyPheCysAlaValPheMetHisS : 154 ||||||||||||!:!:!!||||||! |||!.! !!.!!..!||| !!! !||||||! LeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisT 232794 : TTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACA : 232853 155 : erGlyValLeuThrPheAsnThrIleArgGlyLeuSerLysAspValIleTyrThrGl : 173 !!|||||| !:!! !.!.! !:!!! !|||||| !!! !..!..!.!!|||..!! hrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGl 232854 : CCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGG : 232910 174 : uAsnSerSerValLeuValArgGlyLeuProTyrProPheTyrSerArgIleLeuAsp : 192 !|||..!||| !! !:!! ! !||||||! ! !!||||||!!!!:!:!::!!||| yAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAsp 232911 : GAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGAC : 232967 193 : AlaHisTyrSerProAlaTyrGluPheValPheLeuLeuGlnCysValSerThrPheL : 212 .!!...!:!||||||.!! !!|||.!.:!!|||:!!|||||||||:!!||| !|||: ThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheI 232968 : ACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCA : 233027 213 : euPheAsnSerValThrValAlaValCysGlyLeuAlaAlaValPheValMetHisAl : 231 !! ! |||||||||||||||!.!!.!|||||||||!.!||||||.!.!.!|||||||| leValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAl 233028 : TCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGC : 233084 232 : aCysGlyGlnLeuArgIleLeuMetSerTrpLeuAspAsnLeuIleAspGlyAsnGlu : 250 |||||||||||||!.!:!::!!|||||| ||||||:!!|||:!:|||!.!!!.! ! aCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGly 233085 : GTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGG : 233141 251 : ArgAsnIleSerVal<->ArgArgLysPheAlaIleIleValGluHisHisLeuArgV : 269 !:!.!. !!!||| !:!||||||!!.!.!.!!|||||||||||||||||||||. GlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgT 233142 : CAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTA : 233201 270 : alLeu{As} >>>> Target Intron 1 >>>> {n}PheThrSerArgIleGl : 277 .!|||{!:} 1315 bp {!}|||! ! !!!.!||||| hrLeu{Se}++ ++{r}PheIleArgAsnIleGl 233202 : CATTA{AG}gt.........................ag{T}TTTATACGGAATATAGA : 234540 278 : uAsnIleThrAsnMetIleCysLeuValGluLeuValGlyCysThrMetHisIleCys : 296 ||||:!!! !|||:!:||||||||||||||||||||||||||||||:!!:!!!!:||| uAsnValMetAsnLeuIleCysLeuValGluLeuValGlyCysThrLeuAsnMetCys 234541 : GAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACGTTGAACATGTGC : 234597 297 : LeuLeuGlyTyrTyrCysIleMet >>>> Target Intron 2 >>>> AspTr : 306 :!!|||! !||||||! :!!! ! 189 bp !!: MetLeuGluTyrTyrLeuLeuThr++ ++Glu-- 234598 : ATGCTCGAGTATTATTTACTCACGgt.........................agGAA-- : 234816 307 : pValHisAspAsnLysGlnAsnIleValSerTyrCysMetLeuLeuThrSerIleThr : 325 ! :::|||:::...:::..!|||||| !!!::!!! !..!|||!!:||| -------LysSerLysGluLysLeuAlaSerTyrValIleValTyrValSerMetThr 234817 : -------AAgtcgaaggaaaaattagCTTCATACGTCATCGTGTACGTGTCCATGACA : 234864 326 : PheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln >>>> Tar : 342 |||||||||||||||||||||||||||||||||! |||!!!|||||| PheAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGln++ 234865 : TTtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGCAGgt........ : 234917 343 : get Intron 3 >>>> GlyGlyGlnIleGlyArgSerAlaTyrMetThrAsnTrp : 354 74 bp !! !:!!:!!|||..!!.!!.!|||||||||.!.||| ++CysThrLysValGlyGluLysValTyrMetThrGluTrp 234918 : .................agTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGG : 235025 355 : TyrLeuLeuProGlyAsnThrAlaLeuGlyLeuThrMetIleIleLeuArgSerAsnV : 374 |||! !|||||| !!!.|||||||||||||||..!|||||||||! !||||||!:!: TyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerM 235026 : TACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCA : 235085 375 : alAlaLeuLysIleThrAlaGlyLysPheValGlnLeuSerPheValThrPheGlyGl : 393 !!!.!:!!|||||||||||||||||||||:!!|||:!!||| !!!.!|||||||||! etValIleLysIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAs 235086 : TGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGA : 235142 394 : yVal : 394 !||| pVal 235143 : TGTG : 235147 vulgar: CbirOr28 18 394 . KQ414889.1 232450 235147 + 844 M 58 174 G 1 0 M 178 534 G 0 3 M 15 45 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 33 99 5 0 2 I 0 185 3 0 2 M 1 3 G 3 0 M 33 99 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232451 235147 844 + . gene_id 1 ; sequence CbirOr28 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232451 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232451 233208 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232451 235147 844 + . alignment_id 1 ; Query CbirOr28 ; Align 232451 19 174 ; Align 232625 78 534 ; Align 233162 256 45 ; Align 234525 272 99 ; Align 234813 305 3 ; Align 234816 309 99 ; Align 234989 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 781 Query range: 5 -> 406 Target range: 259724 -> 262192 6 : ValAspAsnProValAsnValSerProThrTyrLeuAlaAspAsnGluTyrSerIleG : 25 ..!:!!!!. !!||| !|||..! !!!:!!:! !::! !!!:!!!:||||||:!!| ThrAsnLysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerLeuG 259725 : ACGAACAAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCC : 259782 26 : lnIleIleArgTrpIleLeuLysThrIleAsnLeuTrpProGlnProProGlyAlaSe : 44 ||.!!! !||||||.!!|||||| !!|||..! !||||||! !! !!..!.!!!! lnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerThrTh 259783 : AATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCACGAC : 259839 45 : rIleIleLysLysIleArgSerGluPheLeuIleLeuThrCysTyrCysLeuMetPhe : 63 !! !:!!:!!||||||! !|||! .!!||||||!!!! !|||||| !! !!!:.!. rArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIleLeu 259840 : CAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATACTG : 259896 64 : GlyThrMetValProSerGlyLeuSerIlePheIleGluSerGlnGluThrLeuAspV : 83 ! !|||:!!:!!|||!!!! !||| !!!:.!.:!!||| :!!|||!:!||| !!: ValThrLeuIleProCysValLeuHisMetLeuLeuGlu---LysGluSerLeuTyrM 259897 : GTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAG---AAGGAGAGTTTGTACA : 259953 84 : alLysLeuArgSerPheGlyProLeuThrPheTrpPheMetAlaMetIleAsnTyrSe : 102 !!||| !!:! !.!!|||||||||||| !||||||:!:!.! |||||||||!! etLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrTh 259954 : TGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACAC : 260010 103 : rCysLeuLeuLeuHisIleAspAspIleArgSerCysValGluHisMetLysAlaAsp : 121 ! |||||||||... ! ||||||! !|||||||||||||||:!!:!! !||| rThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAsp 260011 : AACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGAT : 260067 122 : TrpArgIleValArgArgSerGluGluArgGlnValMetLeuLysAsnAlaArgIleG : 141 |||||||||:!!! !|||..!:!!!!:!:!.!.|||||||||!:! !!|||!:!.!!| TrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheG 260068 : TGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCG : 260127 142 : lyArgPheIleValGlyPheCysAlaValPheMetHisSerGlyValLeuThrPheAs : 160 |||||!:!:!!!.!!.!! !||||||!.!|||:!!!!..!!||||||||| !||| lyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCy 260128 : GCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTG : 260184 161 : nThrIleArgGlyLeuSerLysAspValIleTyrThrGluAsnSerSerValLeuVal : 179 ! !:!!! !! !||||||! !!!:|||||| ! ..!! !|||..!!!! !:!!||| sLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleVal 260185 : TTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTT : 260241 180 : ArgGlyLeuProTyrProPheTyrSerArgIleLeuAspAlaHisTyrSerProAlaT : 199 !.! !||||||! ! !! ! |||!.!..!:!::!!:!!!.!:!! !!|||||| ! HisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetA 260242 : CATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGA : 260301 200 : yrGluPheValPheLeuLeuGlnCysValSerThrPheLeuPheAsnSerValThrVa : 218 !!|||.!!|||.!!:!!:!!|||! !|||||| !|||:!! ! |||||| !||||| snGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrVa 260302 : ACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGT : 260358 219 : lAlaValCysGlyLeuAlaAlaValPheValMetHisAlaCysGlyGlnLeuArgIle : 237 |!.!:!!! !.!!||||||||||||.!...! ||||||||||||||||||!.!:!: lGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnVal 260359 : TGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTG : 260415 238 : LeuMetSerTrpLeuAspAsnLeuIleAsp<-><->GlyAsnGluArgAsnIleSerV : 255 ||||||..!|||:!! .!.!!!:!:||| !!|||..!!:!!!.! :!! LeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaP 260416 : CTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTC : 260475 256 : alArgArgLysPheAlaIleIleValGluHisHisLeuArgValLeu{As} >>>> : 271 ! !!:!:!!.!!!.!:!:|||||||||||||||||||||!.!|||{!.} roPheLysGluIleGlyValIleValGluHisHisLeuArgAlaLeu{Th}++ 260476 : CTTTCAAGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC{AC}gt..... : 260527 272 : Target Intron 1 >>>> {n}PheThrSerArgIleGluAsnIleThrAsnMet : 282 257 bp {!}|||! !||||||||||||:!!:!:! !||| ! ++{r}PheIleSerArgIleGluAspValMetAsnArg 260528 : ....................ag{C}TTCATATCGCGTATCGAGGATGTGATGAACCGG : 260813 283 : IleCysLeuValGluLeuValGlyCysThrMetHisIleCysLeuLeuGlyTyrTyrC : 302 ||||||!!!:!!|||||| !! !!||||||:!! !!||||||||||||||||||||| IleCysPheLeuGluLeuPheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrI 260814 : ATATGCTTCCTGGAGTTGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATA : 260873 303 : ysIleMet >>>> Target Intron 2 >>>> AspTrpValHisAspAsnLys : 311 !:!!||| 852 bp !!:|||!.!.!..!.:!!! ! leLeuMet++ ++GluTrpAlaGluGlnAspIle 260874 : TTCTTATGgt.........................agGAATGGGCTGAGCAAGATATA : 261752 312 : GlnAsnIleValSerTyrCysMetLeuLeuThrSerIleThrPheAsnIlePheIleP : 331 ||||||:!: !!!!|||! !|||:!!|||! !:!!||| !||||||:!!||||||. GlnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheIleI 261753 : CAAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAA : 261812 332 : heCysTyrIleGlyGluIleLeuSerGluGln >>>> Target Intron 3 >>> : 342 !!|||||||||||||||||||||!!!|||||| 81 bp leCysTyrIleGlyGluIleLeuThrGluGln++ 261813 : TCTGTTACATCGGTGAAATACTAACGGAACAGgt........................ : 261847 343 : > GlyGlyGlnIleGlyArgSerAlaTyrMetThrAsnTrpTyrLeuLeuProGlyA : 360 !!..!:!!:!!||| ! !!.!||||||||||||||||||! !||||||! !! ++CysSerLysValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuProAspL 261848 : .agTGCTCGAAAGTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACCTGATA : 261980 361 : snThrAlaLeuGlyLeuThrMetIleIleLeuArgSerAsnValAlaLeuLysIleTh : 379 !.!:! !|||! !|||! !:!!|||||| !|||!.! !!.! ! !!.!!! ysSerIleLeuAspLeuIleLeuIleIleAlaArgLysProProGlyAsn***PheLy 261981 : AAAGTATCCTTGATTTGATTTTGATCATTGCACGAAAACCGCCGGGAAATTAGTTCAA : 262037 380 : rAlaGlyLysPheValGlnLeuSer{Ph} >>>> Target Intron 4 >>>> : 388 !..! ::!|||..!!::! !:!!{.!} 75 bp sCys---ArgPheThrArgSerAla{Il}++ ++ 262038 : ATGT---CGGTTTACACGTTCGGCG{AT}gt.........................ag : 262136 389 : {e}ValThrPheGlyGlyValIleLysSerAlaLeuAlaTyrLeuAsnLeuPheArg : 406 {!} ! !.!. ! !|||:!!|||!!!|||!!!|||||||||||||||!!.||| {e}ProLeuIlePheGlnValValLysThrAlaPheAlaTyrLeuAsnLeuLeuArg 262137 : {T}CCGTTGATATTCCAGGTGGTTAAAACTGCTTTCGCGTATCTGAATCTGTTGCGT : 262192 vulgar: CbirOr28 5 406 . KQ414889.1 259724 262192 + 781 M 71 213 G 1 0 M 170 510 G 0 6 M 23 69 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 39 117 G 1 0 M 6 18 S 0 2 5 0 2 I 0 71 3 0 2 S 1 1 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259725 262192 781 + . gene_id 2 ; sequence CbirOr28 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259725 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259725 260524 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262062 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262062 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 262063 262064 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 262063 262137 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 262136 262137 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 262138 262192 . + . KQ414889.1 exonerate:protein2genome:local exon 262138 262192 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259725 262192 781 + . alignment_id 2 ; Query CbirOr28 ; Align 259725 6 213 ; Align 259938 78 510 ; Align 260454 248 69 ; Align 260783 272 99 ; Align 261734 305 111 ; Align 261926 342 117 ; Align 262043 382 18 ; Align 262139 389 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 737 Query range: 10 -> 407 Target range: 284490 -> 287332 11 : AsnValSerProThrTyrLeuAlaAspAsnGluTyrSerIleGlnIleIleArgTrpI : 30 :::..!..! !!|||!:: !.!!||| !||||||:!!|||!!:! !||||||. SerThrAspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpP 284491 : TCAACCGATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGT : 284548 31 : leLeuLysThrIleAsnLeuTrpProGlnProProGlyAlaSerIleIleLysLysIl : 49 !!|||||| !!|||..!:!!||||||! !! ! !!!.!!!!! !:!::!!||||| heLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIl 284549 : TTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGAT : 284605 50 : eArgSerGluPheLeuIleLeuThrCysTyrCysLeuMetPheGlyThrMetValPro : 68 |!!!|||! ! !!||| |||! ! !!! !! !|||!!: ! ! !:!!|||||| eSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValPro 284606 : CAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCG : 284662 69 : SerGlyLeuSerIlePheIleGluSerGlnGluThrLeuAspValLysLeuArgSerP : 88 !!!!.!|||!!!! ! ! :!!!!:!.! ! !||||||..!|||:!!!:!! !. CysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetI 284663 : TGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGA : 284722 89 : heGlyProLeuThrPheTrpPheMetAlaMetIleAsnTyrSerCysLeuLeuLeuHi : 107 !!|||||||||!:!|||!! .!.|||||| !|||!!.|||! ! !|||:!!! !!. leGlyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerAr 284723 : TCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCG : 284779 108 : sIleAspAspIleArgSerCysValGluHisMetLysAlaAspTrpArgIleVal<-> : 126 ! !! ! ! ||| !!..!||||||:!! !!!!::::||||||||| !:!!..! gGlyGlyLysIleGlyGlnCysValLysAspIleArgAlaAspTrpSerLeuThrLeu 284780 : CGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTT : 284836 127 : <-><->ArgArgSerGluGluArgGlnValMetLeuLysAsnAlaArgIleGlyArgP : 143 !! :::...|||||||||::::::||| ! ! !:!|||||||||||||||! SerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgS 284837 : TCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGAT : 284896 144 : heIleValGlyPheCysAlaValPheMetHisSerGlyValLeuThrPheAsnThrIl : 162 !:!:!.! !|||||||||! !||||||:!!||||||! !!!! !!:!!.!|||:! erLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrVa 284897 : CTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGT : 284953 163 : eArgGlyLeuSerLysAspValIleTyrThrGluAsnSerSerValLeuValArgGly : 181 :! ! !|||!!! ||| ! ! ! !..!!:!! ! !||||||..! lMetProLeuCys---ThrValArgThrGluIleIleAspAsnGluThrValArgSer 284954 : GATGCCGTTGTGC---ACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCT : 285007 182 : LeuProTyrProPheTyrSerArgIleLeuAspAlaHisTyrSerProAlaTyrGluP : 201 ! ! !!!:!|||.!!||| !! !!:!!|||||| !!!.! !||||||:!!!:!|||. GlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluI 285008 : CAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGA : 285067 202 : heValPheLeuLeuGlnCysValSerThrPheLeuPheAsnSerValThrValAlaVa : 220 !!||| !!!:!!||||||:!!:!!.!!|||:!!.!. !!||||||||||||!.!!. leValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAl 285068 : TCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGC : 285124 221 : lCysGlyLeuAlaAlaValPheValMetHisAlaCysGlyGlnLeuArgIleLeuMet : 239 !|||.!!||||||||||||||||||||||||!.!|||||||||!!!|||||||||:!! aCysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuVal 285125 : TTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTG : 285181 240 : SerTrpLeuAspAsnLeuIleAspGly<-><->AsnGluArgAsnIleSerVal<->A : 256 !!! !||||||!!.|||:!!|||||| .....!!:!...:!:|||..! . ThrLysLeuAspLysLeuValAspGlyValLysGlyArgLysGlyLeuSerThrHisG 285182 : ACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATG : 285241 257 : rgArgLysPheAlaIleIleValGluHisHisLeuArgValLeu{As} >>>> Tar : 271 .!!:!::!.!.!.! !|||:!!||||||||||||!:!:!!|||{..} luGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 285242 : AACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt........ : 285290 272 : get Intron 1 >>>> {n}PheThrSerArgIleGluAsnIleThrAsnMetIle : 283 1411 bp {!}|||! !|||!:!||||||...:!! !||| ||| ++{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIle 285291 : .................ag{T}TTTATATCGCAAATCGAGGGGCTCCTAAACGAAATA : 286733 284 : CysLeuValGluLeuValGlyCysThrMetHisIleCysLeuLeuGlyTyrTyrCysI : 303 |||!!!||||||:!!:!!|||||||||:!!:!!||||||!!!||||||||||||! : CysPheValGluValIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuL 286734 : TGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTAC : 286793 304 : leMet >>>> Target Intron 2 >>>> AspTrpValHisAspAsnLysGln : 312 !:! ! 80 bp !!:|||! !!!...!.!.! ! euThr++ ++GluTrpGluGlnSerGluThrIle 286794 : TGACGgt.........................agGAATGGGAGCAAAGTGAAACTATA : 286900 313 : AsnIleValSerTyrCysMetLeuLeuThrSerIleThrPheAsnIlePheIlePheC : 332 ...! :!!!!!||||||! !||||||..!|||.!!|||||||||:!!||||||.!!| GlyThrIleThrTyrCysThrLeuLeuValSerPheThrPheAsnValPheIleLeuC 286901 : GGAACGATCACGTATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCT : 286960 333 : ysTyrIleGlyGluIleLeuSerGluGln >>>> Target Intron 3 >>>> : 342 ||||||||||||||||||||||||||||| 74 bp ysTyrIleGlyGluIleLeuSerGluGln++ ++ 286961 : GTTACATCGGTGAAATTCTCTCCGAACaggt.........................ag : 287062 343 : GlyGlyGlnIleGlyArgSerAlaTyrMetThrAsnTrpTyrLeuLeuProGlyAsnT : 361 !! !:!!:!!||| !|||.!!||||||! !:!!||||||! !|||||||||!!.| CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysT 287063 : tGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAA : 287121 362 : hrAlaLeuGlyLeuThrMetIleIleLeuArgSerAsnValAlaLeuLysIleThrAl : 380 |||||! !||||||! !:!!|||.!! ! !|||||| !:!!:!!|||:!!||||| hrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 287122 : CAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 287178 381 : aGlyLysPheValGlnLeuSerPheValThrPheGlyGly >>>> Target Intr : 394 |||||||.!!:!!.!.||||||!!. !!:!||| !!.!! 71 bp aGlyLysIleIleAspLeuSerLeuSerSerPheCysSer++ 287179 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt................ : 287222 395 : on 4 >>>> ValIleLysSerAlaLeuAlaTyrLeuAsnLeuPheArgThr : 407 |||:!:|||||||||!!!|||||||||!:!|||!!.|||||| ++ValLeuLysSerAlaPheAlaTyrLeuSerLeuLeuArgThr 287223 : .........agGTGTTGAAATCGGCATTCGCATATCTGAGCTTATTACGTACG : 287332 vulgar: CbirOr28 10 407 . KQ414889.1 284490 287332 + 737 M 115 345 G 0 9 M 41 123 G 1 0 M 81 243 G 0 6 M 7 21 G 0 3 M 15 45 S 0 2 5 0 2 I 0 1407 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284491 287332 737 + . gene_id 3 ; sequence CbirOr28 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284491 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284491 285287 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286698 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287220 287221 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 287220 287290 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287289 287290 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 287291 287332 . + . KQ414889.1 exonerate:protein2genome:local exon 287291 287332 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284491 287332 737 + . alignment_id 3 ; Query CbirOr28 ; Align 284491 11 345 ; Align 284845 126 123 ; Align 284968 168 243 ; Align 285217 249 21 ; Align 285241 256 45 ; Align 286700 272 99 ; Align 286879 305 111 ; Align 287064 342 156 ; Align 287291 394 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 674 Query range: 10 -> 405 Target range: 278543 -> 280468 11 : AsnValSerProThrTyrLeuAlaAspAsnGluTyrSerIleGlnIleIleArgTrpI : 30 :::..!..! !!|||!:: !.!!||| !||||||:!!|||!!:! !||||||. SerThrAspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpP 278544 : TCAACCGATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGT : 278601 31 : leLeuLysThrIleAsnLeuTrpProGlnProProGlyAlaSerIleIleLysLysIl : 49 !!|||||| !!|||..!:!!||||||! !! ! !!!.!!!!! !:!::!!||||| heLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIl 278602 : TTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGAT : 278658 50 : eArgSerGluPheLeuIleLeuThrCysTyrCysLeuMetPheGlyThrMetValPro : 68 |!!!|||! ! !!||| |||! ! !!! !! !|||!!: ! ! !:!!|||||| eSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValPro 278659 : CAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCG : 278715 69 : SerGlyLeuSerIlePheIleGluSerGlnGluThrLeuAspValLysLeuArgSerP : 88 !!!!.!|||!!!! ! ! :!!!!:!.! ! !||||||..!|||:!!!:!! !. CysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetI 278716 : TGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGA : 278775 89 : heGlyProLeuThrPheTrpPheMetAlaMetIleAsnTyrSerCysLeuLeuLeuHi : 107 !!|||||||||!:!|||!! ||||||! !|||!!.|||! ! !|||:!!! !!. leGlyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerAr 278776 : TCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCG : 278832 108 : sIleAspAspIleArgSerCysValGluHisMetLysAlaAspTrpArgIleVal<-> : 126 ! !! ! ! ||| !!!.!||||||.!. !!!!::::.!!|||||| !:!!..! gGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeu 278833 : CGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTT : 278889 127 : <-><->ArgArgSerGluGluArgGlnValMetLeuLysAsnAlaArgIleGlyArgP : 143 |||:::...|||||||||::::::||| ! ! !:!|||||||||||||||! SerTyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgS 278890 : TCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGAT : 278949 144 : heIleValGlyPheCysAlaValPheMetHisSerGlyValLeuThrPheAsnThrIl : 162 !:!:!.! !||| !!|||! !||||||:!!||||||! !:!! !!:!!.!.!!:! erLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaVa 278950 : CTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGT : 279006 163 : eArgGlyLeuSerLysAspValIleTyrThrGluAsnSerSerValLeuValArgGly : 181 :! ! !|||! ! ! ||| ! ! ! !..!!:!! ! !||||||..! lMetProLeuPheAla---ValArgThrGluIleIleAspAsnGluThrValArgSer 279007 : GATGCCGTTGTTCGCA---GTACGCACGGAGATCATCGACAATGAAACGGTGAGATCT : 279060 182 : LeuProTyrProPheTyrSerArgIleLeuAspAlaHisTyrSerProAlaTyrGluP : 201 ! ! !!!:!|||.!!||| !! !!:!!|||||| !!!.! !||||||:!!!:!|||. GlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluI 279061 : CAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGA : 279120 202 : heValPheLeuLeuGlnCysValSerThrPheLeuPheAsnSerValThrValAlaVa : 220 !!||| !!!:!!||||||:!!:!!.!!|||:!!!!. !!||||||||||||!.!!. leValGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAl 279121 : TCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGC : 279177 221 : lCysGlyLeuAlaAlaValPheValMetHisAlaCysGlyGlnLeuArgIleLeuMet : 239 !|||.!!||| !||||||||||||||||||!.!|||||||||!!!|||||||||:!! aCysSerLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuVal 279178 : TTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTG : 279234 240 : SerTrpLeuAspAsnLeuIleAspGly<-><->AsnGluArgAsnIleSerVal<->A : 256 !!! !||||||!!.|||||||||||| .....!!:!!:!:!:|||..! . ThrLysLeuAspLysLeuIleAspGlyValLysGlyArgLysSerLeuSerThrHisG 279235 : ACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATG : 279294 257 : rgArgLysPheAlaIleIleValGluHisHisLeuArgValLeu{As} >>>> Tar : 271 .!!:!::!.!.!.! !|||:!!||||||||||||!:!:!!|||{..} luGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 279295 : AACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt........ : 279343 272 : get Intron 1 >>>> {n}PheThrSerArgIleGluAsnIleThrAsnMetIle : 283 571 bp {!}|||! !|||!:!||||||...:!! !||| ||| ++{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIle 279344 : .................ag{T}TTTATATCGCAAATCGAGGGGCTCCTGAACGAAATA : 279946 284 : CysLeuValGluLeuValGlyCysThrMetHisIleCysLeuLeuGlyTyrTyrCysI : 303 |||!!!||||||:!!:!!|||||||||:!!:!!||||||!!!||| !||||||! : CysPheValGluValIleGlyCysThrLeuAsnIleCysPheLeuThrTyrTyrLeuL 279947 : TGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGACATATTATTTAC : 280006 304 : leMet >>>> Target Intron 2 >>>> AspTrpValHisAspAsnLysGln : 312 !!! ! 80 bp !!:|||! !!!.:!!:!! ! euThr++ ++GluTrpGluGlnAsnAspAlaIle 280007 : TCACGgt.........................agGAATGGGAGCAAAATGACGCTATA : 280113 313 : AsnIleValSerTyrCysMetLeuLeuThrSerIleThrPheAsnIlePheIlePheC : 332 ...! !!!!!|||! |||!!!|||! !|||:!!|||||||||:!!||||||.!!| GlyThrPheThrTyrLeuMetPheLeuIleSerLeuThrPheAsnValPheIleLeuC 280114 : GGAACGTTCACGTATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCT : 280173 333 : ysTyrIleGlyGluIleLeuSerGluGln >>>> Target Intron 3 >>>> : 342 ||||||||||||||||||||||||||||| 74 bp ysTyrIleGlyGluIleLeuSerGluGln++ ++ 280174 : GTTACATCGGTGAAATTCTCTCCGAACaggt.........................ag : 280275 343 : GlyGlyGlnIleGlyArgSerAlaTyrMetThrAsnTrpTyrLeuLeuProGlyAsnT : 361 !! !:!!:!!||| !|||.!!||||||! !:!!||||||! !|||||||||!!.! CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysL 280276 : TGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGA : 280334 362 : hrAlaLeuGlyLeuThrMetIleIleLeuArgSerAsnValAlaLeuLysIleThrAl : 380 !|||! !||||||! !:!!|||.!! ! !|||||| !:!!:!!|||:!!||||| ysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 280335 : AAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 280391 381 : aGlyLysPheValGlnLeuSerPheValThrPheGlyGlyValIleLysSerAlaLeu : 399 |||||||.!!:!!.!.||||||!!. !!:!||| !!.!!|||! !! ! ! !||| aGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeu 280392 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTA : 280448 400 : AlaTyrLeuAsnLeuPhe : 405 :!!|||! !:!!|||!:! SerTyrTyrHisLeuTyr 280449 : TCCTATTATCATTTGTAC : 280468 vulgar: CbirOr28 10 405 . KQ414889.1 278543 280468 + 674 M 115 345 G 0 9 M 42 126 G 1 0 M 80 240 G 0 6 M 7 21 G 0 3 M 15 45 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278544 280468 674 + . gene_id 4 ; sequence CbirOr28 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278544 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278544 279340 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280468 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280468 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278544 280468 674 + . alignment_id 4 ; Query CbirOr28 ; Align 278544 11 345 ; Align 278898 126 126 ; Align 279024 169 240 ; Align 279270 249 21 ; Align 279294 256 45 ; Align 279913 272 99 ; Align 280092 305 111 ; Align 280277 342 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 633 Query range: 9 -> 341 Target range: 208176 -> 210774 10 : ValAsnValSerProThrTyrLeuAlaAspAsnGluTyrSerIleGlnIleIleArgT : 29 :!! !:!!!:! !!.!||| ! !||| ...!:!!:!:!!!:::!:! ! !| IlePheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValT 208177 : ATATTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGT : 208234 30 : rpIleLeuLysThrIleAsnLeuTrpProGlnProProGlyAlaSerIleIleLysLy : 48 ||! ||||||! !|||..!! !||||||::! !! !! ! !||| :!!:!!!! rpThrLeuLysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAs 208235 : GGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAA : 208291 49 : sIleArgSerGluPheLeuIleLeuThrCysTyrCysLeuMetPheGlyThrMetVal : 67 .! !!:! ! .!!|||! !:!! ! !!:!!||||||:!: ! !! !:!!:!! nSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIle 208292 : CAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATA : 208348 68 : ProSerGlyLeuSerIlePheIleGluSerGlnGluThrLeuAspValLysLeuArgS : 87 |||!!!|||:!!! ! .!!:!!! ! !:!!!!: !! !||| :!!|||!:!! ProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAsp---GlnLeuLysI 208349 : CCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGAC---CAATTAAAGA : 208405 88 : erPheGlyProLeuThrPheTrpPheMetAlaMetIleAsnTyrSerCysLeuLeuLe : 106 !! !.!! !!|||!:!|||!::.!.||||||.!.! !!.||| ! !:!! !:! leCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrVa 208406 : TCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGT : 208462 107 : uHisIleAspAspIleArgSerCysValGluHisMetLysAlaAspTrpArgIleVal : 125 !!.! ! !|||||||||!.!|||||||||:!!:!::!!||||||||||||! !||| lArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnVal 208463 : CCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTG : 208519 126 : ArgArgSerGluGluArgGlnValMetLeuLysAsnAlaArgIleGlyArgPheIleV : 145 ..!!.!..!|||!!:|||:!!:!!|||||| ! ||||||!!!.!!!.!||| :!:: GluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuI 208520 : GAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGA : 208579 146 : alGlyPheCysAlaValPheMetHisSerGlyValLeuThrPheAsnThrIleArgGl : 164 !!! !.!.|||!.!!.!||||||:!!.!!||||||::: ::: ! ! ! leValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuPr 208580 : TCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCC : 208636 165 : yLeuSerLysAspValIleTyrThrGluAsnSerSerValLeuValArgGlyLeuPro : 183 !|||!!!::!||| !:!! ! !|||..!.!!!:!:!! ! !||| !!||| ! oLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuVal 208637 : GCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTT : 208693 184 : TyrProPheTyrSerArgIleLeuAspAlaHisTyrSerProAlaTyrGluPheValP : 203 |||||| !! !!.! !|||||||||!.!!..|||||||||!.! !!|||.!! !!! TyrProValProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheT 208694 : TATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTT : 208753 204 : heLeuLeuGlnCysValSerThrPheLeuPheAsnSerValThrValAlaValCysGl : 222 :! !:!!|||! :!!||| !|||:!! !:!!!:!:!!||||||!.!!.!||||| yrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGl 208754 : ATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGG : 208810 223 : yLeuAlaAlaValPheValMetHisAlaCysGlyGlnLeuArgIleLeuMetSerTrp : 241 ||||||||||:!!.!!!.!|||||||||||||||||||||!:!||||||||||||||| yLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrp 208811 : TTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGG : 208867 242 : LeuAspAsnLeuIleAspGlyAsnGlu<->ArgAsnIleSerValArgArgLysPheA : 260 :!!!!:!!.|||:!!||||||...||| ..!.!.! !:!:!! !!:!!:!!!.| MetGluLysLeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuA 208868 : ATGGAGAAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGG : 208927 261 : laIleIleValGluHisHisLeuArgValLeu{As} >>>> Target Intron 1 : 271 ||! !|||||||||!!.|||:!!||||||:!!{||} 1536 bp laAsnIleValGluGlnHisValArgValIle{As}++ 208928 : CTAATATCGTGGAGCAGCATGTTCGAGTGATC{AA}gt.................... : 208964 272 : >>>> {n}PheThrSerArgIleGluAsnIleThrAsnMetIleCysLeuValGlu : 287 {|}|||! !:!!! !! !||||||:!! !:!! !|||! |||:!!||| ++{n}PheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGlu 208965 : .....ag{T}TTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAA : 210544 288 : LeuValGlyCysThrMetHisIleCysLeuLeuGlyTyrTyrCysIleMet >>>> : 305 :!!||||||||||||:!!:!!!!:|||!!!|||||||||||| !!:!!: MetValGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210545 : ATGGTGGGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt..... : 210600 306 : Target Intron 2 >>>> AspTrpValHisAspAsnLysGlnAsnIleValSer : 316 66 bp !!:|||! ! ! ! :!! !:!! !:!!!!! ++GluTrpAspSerLysAspProIleSerSerLeuThr 210601 : ....................agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACG : 210697 317 : TyrCysMetLeuLeuThrSerIleThrPheAsnIlePheIlePheCysTyrIleGlyG : 336 ||| :!:||||||||||||:!!|||||||||||||||||||||||||||||||||| TyrIleValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyG 210698 : TACATAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTG : 210757 337 : luIleLeuSerGluGln : 341 ||:!:|||:!!|||||| luValLeuAlaGluGln 210758 : AAGTGTTGGCTGAACAg : 210774 vulgar: CbirOr28 9 341 . KQ414889.1 208176 210774 + 633 M 73 219 G 1 0 M 167 501 G 0 3 M 20 60 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208177 210774 633 + . gene_id 5 ; sequence CbirOr28 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208177 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208177 208961 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208177 210774 633 + . alignment_id 5 ; Query CbirOr28 ; Align 208177 10 219 ; Align 208396 84 501 ; Align 208900 251 60 ; Align 210499 272 99 ; Align 210664 305 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 615 Query range: 15 -> 341 Target range: 217156 -> 219439 16 : TyrLeuAlaAspAsnGluTyrSerIleGlnIleIleArgTrpIleLeuLysThrIleA : 35 ||| ::: ... ||||||||| ! !||||||:!:|||||| !!!!:. TyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetG 217157 : tacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGG : 217214 36 : snLeuTrpProGlnProProGlyAlaSerIleIleLysLysIleArgSerGluPheLe : 54 .!|||||||||.!. !!! ! !.!!!!!! ! !::!||||||! !! !:!!.!.:! lyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIl 217215 : GTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGAT : 217271 55 : uIleLeuThrCysTyrCysLeuMetPheGlyThrMetValProSerGlyLeuSerIle : 73 !! ! ! !|||||| !!|||!!: ! ! !.!.||||||!!!..!:!!! !:!: eAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyrVal 217272 : AAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTG : 217328 74 : PheIleGluSerGlnGluThrLeuAspValLysLeuArgSerPheGlyProLeuThrP : 93 |||:!!||| !:!!!!: !! !||| ||||||!:! !||||||||||||! !| PheLeuGluValGluAspLeuTyrAsp---LysLeuLysLeuPheGlyProLeuIleP 217329 : TTCCTCGAAGTTGAAGATCTCTACGAC---AAGTTGAAACTGTTCGGTCCGTTGATCT : 217385 94 : heTrpPheMetAlaMetIleAsnTyrSerCysLeuLeuLeuHisIleAspAspIleAr : 112 ||!! ! ||||||.!.:!!!!.|||! !! !|||:!!:!!|||! ! |||||||| heCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleAr 217386 : TCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCG : 217442 113 : gSerCysValGluHisMetLysAlaAspTrpArgIleValArgArgSerGluGluArg : 131 |..!||||||..!...!!::!! !|||||||||! !|||||| !!..!:!!!!:||| gGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArg 217443 : CGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGG : 217499 132 : GlnValMetLeuLysAsnAlaArgIleGlyArgPheIleValGlyPheCysAlaValP : 151 :!!!.!|||:!! !||||||!.!.!!|||||| :!:||| !.!!|||.!! !!| GluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPheP 217500 : GAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCT : 217559 152 : heMetHisSerGlyValLeuThrPheAsnThrIleArgGlyLeuSerLysAspValIl : 170 |||||:!!|||||| ::: ::: ! !! ! !:!!||| !! !|| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIl 217560 : TCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAAT : 217616 171 : eTyrThrGluAsnSerSerValLeuValArgGlyLeuProTyrProPheTyrSerArg : 189 | :!!||||||.!!!:!:!! ! !!! ! !||| !!:!|||||| !.! ! eLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyr 217617 : TCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTAT : 217673 190 : IleLeuAspAlaHisTyrSerProAlaTyrGluPheValPheLeuLeuGlnCysValS : 209 |||:!!|||.!!!.!|||!!!|||.!! !!|||.!!||||||!!!||||||! :!!: IleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleA 217674 : ATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCG : 217733 210 : erThrPheLeuPheAsnSerValThrValAlaValCysGlyLeuAlaAlaValPheVa : 228 !! ! !|||.!.:!!.!!:!!||| !|||!.!|||.!!|||||||||!.!|||!. laGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAl 217734 : CTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGC : 217790 229 : lMetHisAlaCysGlyGlnLeuArgIleLeuMetSerTrpLeuAspAsnLeuIleAsp : 247 !:!:|||||||||||||||:!!..!:!:||||||!:!||||||.!.:!!||||||||| aValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAsp 217791 : GGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGAC : 217847 248 : GlyAsn<->GluArgAsnIleSerValArgArgLysPheAlaIleIleValGluHisH : 266 |||!.. !!:! !!:! !!!!||| ! !!!:!.!!|||! !||||||...!!.| GlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnH 217848 : GGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAAC : 217907 267 : isLeuArgValLeu{As} >>>> Target Intron 1 >>>> {n}PheThrSe : 274 ||:!!|||:!!|||{!!} 1229 bp {.}||| :! isValArgIleLeu{Ly}++ ++{s}PheLeuTh 217908 : ACGTTCGGATATTA{AA}gt.........................ag{a}tttttgaC : 219160 275 : rArgIleGluAsnIleThrAsnMetIleCysLeuValGluLeuValGlyCysThrMet : 293 !! !! !|||!..! ! !.!....|||! !!!!!.!|||!!!:!!|||||||||||| rLeuThrGluArgThrLeuGlnGlnIleSerPheAlaGluPheLeuGlyCysThrMet 219161 : GCTCACAGAGAGAACCCTCCAGCAAATCTCTTTCGCTGAATTTCTAGGATGCACCATG : 219217 294 : HisIleCysLeuLeuGlyTyrTyrCysIleMet >>>> Target Intron 2 >> : 305 !!|||||||||:!!||||||||| !|||:!! 76 bp AspIleCysLeuValGlyTyrTyrIleIleVal++ 219218 : GACATATGTCTCGTTGGATATTACATTATCGTGgt....................... : 219255 306 : >> AspTrpValHisAspAsnLysGlnAsnIleValSerTyrCysMetLeuLeuThr : 322 !!:||| ! :!!:!! ! !!:! !|||!!!||| !!!:||||||! ! ++GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIle 219256 : ..agGAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATA : 219380 323 : SerIleThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln : 341 |||:!:|||||||||||||||||||||||||||||||||||||||:!!:!!|||||| SerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln 219381 : TCCCTcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: CbirOr28 15 341 . KQ414889.1 217156 219439 + 615 M 67 201 G 1 0 M 166 498 G 0 3 M 21 63 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217157 219439 615 + . gene_id 6 ; sequence CbirOr28 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217157 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217157 217923 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217157 219439 615 + . alignment_id 6 ; Query CbirOr28 ; Align 217157 16 201 ; Align 217358 84 498 ; Align 217859 250 63 ; Align 219154 272 99 ; Align 219329 305 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 605 Query range: 9 -> 303 Target range: 274347 -> 275306 10 : ValAsnValSerProThrTyrLeuAlaAspAsnGluTyrSerIleGlnIleIleArgT : 29 :!!||||||!!! !!!.!!:! !::! !!:!!!:||||||:!:|||:!:! !|||| IleAsnValThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgT 274348 : ATAAACGTAACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGAT : 274405 30 : rpIleLeuLysThrIleAsnLeuTrpProGlnProProGlyAlaSerIleIleLysLy : 48 ||.!!|||||| !!|||..! !|||||| ! !! !! !.!!!!!! !.!!:!!:: rpPheLeuLysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGluAr 274406 : GGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACG : 274462 49 : sIleArgSerGluPheLeuIleLeuThrCysTyrCysLeuMetPheGlyThrMetVal : 67 !|||! !|||.!....||||||... |||||||||!!!!!:.!!..!|||:!::!! gIleLeuSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIle 274463 : AATCCTTTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATC : 274519 68 : ProSerGlyLeuSerIlePheIleGluSerGlnGluThrLeuAspValLysLeuArgS : 87 |||||| !!!! !|||.!.:!! !.!.|||!:!||| !!:!!||||||!:!! ProSerIlePheHisIleIleLeu---ValAspGluSerLeuHisLeuLysLeuLysL 274520 : CCAAGCATATTTCACATCATACTA---GTAGATGAAAGTCTCCATCTGAAGCTGAAGT : 274576 88 : erPheGlyProLeuThrPheTrpPheMetAlaMetIleAsnTyrSerCysLeuLeuLe : 106 !.!!||||||||| ! !||||||!!:!.! |||||||||!!! |||||||| euLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLe 274577 : TGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCT : 274633 107 : uHisIleAspAspIleArgSerCysValGluHisMetLysAlaAspTrpArgIleVal : 125 |!.!! ! ! !!:||||||.!!|||||||||||||||:!!.!!||||||||||||||| uArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleVal 274634 : ACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTG : 274690 126 : ArgArgSerGluGluArgGlnValMetLeuLysAsnAlaArgIleGlyArgPheIleV : 145 ! !||| !!|||!!:!:!|||||||||||||||||||||!:!|||||||||!:!:!!! ThrArgProGluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValA 274691 : ACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCG : 274750 146 : alGlyPheCysAlaValPheMetHisSerGlyValLeuThrPheAsnThrIleArgGl : 164 .! !|||||||||!.!||||||!!.!!!||||||||| !!:! !..!|||! !!. laIlePheCysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAl 274751 : CGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGC : 274807 165 : yLeuSerLysAspValIleTyrThrGluAsnSerSerValLeuValArgGlyLeuPro : 183 !!!!!!!! !.!...!:!! ! ..!! !|||..!!!! ! !|||!.! !|||||| aPheThrMetGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuPro 274808 : GTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCG : 274864 184 : TyrProPheTyrSerArgIleLeuAspAlaHisTyrSerProAlaTyrGluPheValP : 203 ! ! ! !|||!.!!:!|||:!!! !.! !! ||||||.!! !!|||.!!|||. CysLysAlaTyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValL 274865 : TGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCC : 274924 204 : heLeuLeuGlnCysValSerThrPheLeuPheAsnSerValThrValAlaValCysGl : 222 !! !! !|||! !|||||| !|||:!! ! |||||| !.!!|||!.!!.!! !.! euAlaSerGlnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSe 274925 : TTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAG : 274981 223 : yLeuAlaAlaValPheValMetHisAlaCysGlyGlnLeuArgIleLeuMetSerTrp : 241 !|||||||||||||||!.! ||||||! !|||||||||!!!:!:||||||! !||| rLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrp 274982 : CCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGG : 275038 242 : LeuAspAsnLeuIleAsp<->GlyAsnGluArgAsnIleSerValArg<->ArgLysP : 259 :!! !.!.!!!:!::!! ..!!..!!::::||| :::||| !:!!. IleThrGluPheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluI 275039 : ATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGA : 275098 260 : heAlaIleIleValGluHisHisLeuArgValLeu{As} >>>> Target Intro : 271 !!!.!:!::!!||||||||||||||||||||||||{!:} 74 bp leGlyValValValGluHisHisLeuArgValLeu{Se}++ 275099 : TCGGCGTGGTTGTCGAACATCATCTGAGGGTACTC{AG}gt................. : 275138 272 : n 1 >>>> {n}PheThrSerArgIleGluAsnIleThrAsnMetIleCysLeuVal : 286 {!}|||! !:!!|||||||||:!!:!:! !||| ||||||!!!:!! ++{r}PheIleAlaArgIleGluAspValMetAsnArgIleCysPheMet 275139 : ........ag{T}TTCATAGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATG : 275253 287 : GluLeuValGlyCysThrMetHisIleCysLeuLeuGlyTyrTyrCysIle : 303 |||||| !! !||||||:!! !!!!:|||:!!|||||||||||| !:!! GluLeuPheLysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleLeu 275254 : GAATTGTTCAAGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTCTC : 275306 vulgar: CbirOr28 9 303 . KQ414889.1 274347 275306 + 605 M 66 198 G 1 0 M 171 513 G 0 3 M 9 27 G 0 3 M 14 42 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274348 275306 605 + . gene_id 7 ; sequence CbirOr28 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274348 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274348 275135 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274348 275306 605 + . alignment_id 7 ; Query CbirOr28 ; Align 274348 10 198 ; Align 274546 77 513 ; Align 275062 248 27 ; Align 275092 257 42 ; Align 275211 272 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 576 Query range: 14 -> 341 Target range: 212851 -> 214740 15 : ThrTyrLeuAlaAspAsnGluTyrSerIleGlnIleIleArgTrpIleLeuLysThrI : 34 |||||| ! ! ... |||||| ! ! !||||||:!!|||||| !!! ThrTyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProT 212852 : ACCTACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAA : 212909 35 : leAsnLeuTrpProGlnProProGlyAlaSerIleIleLysLysIleArgSerGluPh : 53 ..!|||||||||.!. ! !! !!.!||| |||:!!|||! !! !:!!..!!! hrGlyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIleAlaArgLe 212910 : CGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATT : 212966 54 : eLeuIleLeuThrCysTyrCysLeuMetPheGlyThrMetValProSerGlyLeuSer : 72 .:!!! ! !..!|||||| !!|||!!: ! ! !:!::!!|||!!!.!!|||! ! uValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTyr 212967 : GGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTAC : 213023 73 : IlePheIleGluSerGlnGluThrLeuAspValLysLeuArgSerPheGlyProLeuT : 92 :!:|||:!!!!: !|||...::: ::::!!..!! !|||||| !!!!. ValPheLeuAsp---ValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheA 213024 : GTGTTCCTCGAC---GTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTG : 213080 93 : hrPheTrpPheMetAlaMetIleAsnTyrSerCysLeuLeuLeuHisIleAspAspIl : 111 !!|||!! ! |||:!! !!.||| !! |||:!!|||||| !|||||||| laPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIl 213081 : CATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATAT : 213137 112 : eArgSerCysValGluHisMetLysAlaAspTrpArgIleValArgArgSerGluGlu : 130 ||||!!!|||||||||||||||||| !||||||!:!! !:!!! !!.!..!|||!!: eArgThrCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAsp 213138 : TCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGAC : 213194 131 : ArgGlnValMetLeuLysAsnAlaArgIleGlyArgPheIleValGlyPheCysAlaV : 150 !:!:!!:!!||| ! !||||||!!!.!!|||!:! |||||| !.!!|||||| LysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaP 213195 : AAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTT : 213254 151 : alPheMetHisSerGlyValLeuThrPheAsnThrIleArgGlyLeuSerLysAspVa : 169 !!||||||:!!!!!||| !! ! !!:! ! !:!! ! !:!!||| !||| hePheMetTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLy 213255 : TCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAA : 213311 170 : lIleTyrThrGluAsnSerSerValLeuValArgGlyLeuProTyrProPheTyrSer : 188 !!!: .!!|||:!! !!:!||| ! !!||| !:!! ! !||| !!! !!! sMetValAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSerArg 213312 : AATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGA : 213368 189 : ArgIleLeuAspAlaHisTyrSerProAlaTyrGluPheValPheLeuLeuGlnCysV : 208 !|||:!!|||!.!!..|||||||||!.! !!|||.!. !!||||||:!!||| !: PheIleValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleI 213369 : TTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTA : 213428 209 : alSerThrPheLeuPheAsnSerValThrValAlaValCysGlyLeuAlaAlaValPh : 227 !!:!! ! ! |||.!!:!!:!!:!!.!!|||!.!!.!|||.!!|||||||||||||| leAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPh 213429 : TAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTT : 213485 228 : eValMetHisAlaCysGlyGlnLeuArgIleLeuMetSerTrpLeuAspAsnLeuIle : 246 |!.!:!:|||||||||||||||:!! !!||||||||||||||||||!!::!!|||||| eAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIle 213486 : TGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATA : 213542 247 : AspGlyAsnGlu<->ArgAsnIleSerValArgArgLysPheAlaIleIleValGluH : 265 ||||||!..||| ! !!:!! !:!||| ! !!:!.!!|||:!!||||||.!.! AspGlyArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleValAsnG 213543 : GACGGTAGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACC : 213602 266 : isHisLeuArgValLeu{As} >>>> Target Intron 1 >>>> {n}PheTh : 273 !.|||:!!|||:!!|||{!!} 840 bp {.}||| lnHisValArgIleLeu{Ly}++ ++{s}PheLe 213603 : AGCATGTGCGGATACTG{AA}gt.........................ag{A}TTCTT : 214466 274 : rSerArgIleGluAsnIleThrAsnMetIleCysLeuValGluLeuValGlyCysThr : 292 !..!! !:!:|||!!. ! !......:!!! !!!!!.!||||||:!!! !|||||| uGluLeuValGluLysAlaLeuArgGlnValSerPheAlaGluLeuLeuValCysThr 214467 : AGAGCTCGTGGAGAAAGCACTTCGGCAAGTATCTTTCGCTGAATTATTAGTATGCACG : 214523 293 : MetHisIleCysLeuLeuGlyTyrTyrCysIleMetAspTrpValHisAspAsnLysG : 312 :!!:!!:!!||||||:!!||||||||| |||!!: !... :::|||. ValAsnLeuCysLeuValGlyTyrTyr---IleIleThrValCysArgGlyHisLysA 214524 : GTGAATCTCTGTCTCGTTGGATATTAC---ATAATAACGGTATGCAGAggacataaaa : 214580 313 : lnAsnIle{V} >>>> Target Intron 2 >>>> {al}SerTyrCysMetLe : 320 ..||| {:} 71 bp {!!}!!!||| :!!|| snAsnSer{L}+- ++{eu}ThrTyrValValLe 214581 : ataattca{c}gc.........................ag{TA}ACTTACGTGGTGTT : 214675 321 : uLeuThrSerIleThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSer : 339 |! !! !|||:::||||||||||||||||||||||||||||||||||||:!!:!!||| uTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValSer 214676 : GTATATCTCTCtcactttcaatattttcatattttgttaCATAGGCGAGCTTGTGTCT : 214732 340 : GluGln : 341 |||||| GluGln 214733 : GAACAG : 214740 vulgar: CbirOr28 14 341 . KQ414889.1 212851 214740 + 576 M 62 186 G 1 0 M 173 519 G 0 3 M 20 60 S 0 2 5 0 2 I 0 836 3 0 2 S 1 1 M 30 90 G 1 0 M 12 36 S 0 1 5 0 2 I 0 67 3 0 2 S 1 2 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212852 214740 576 + . gene_id 8 ; sequence CbirOr28 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212852 213621 . + . KQ414889.1 exonerate:protein2genome:local exon 212852 213621 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 213622 213623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 213622 214461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214460 214461 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214462 214589 . + . KQ414889.1 exonerate:protein2genome:local exon 214462 214589 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 214590 214591 . + . intron_id 2 ; splice_site "gc" KQ414889.1 exonerate:protein2genome:local intron 214590 214660 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 214659 214660 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214661 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214661 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212852 214740 576 + . alignment_id 8 ; Query CbirOr28 ; Align 212852 15 186 ; Align 213038 78 519 ; Align 213560 251 60 ; Align 214463 272 90 ; Align 214553 303 36 ; Align 214663 316 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 575 Query range: 19 -> 341 Target range: 262843 -> 264648 20 : AsnGluTyrSerIleGlnIleIleArgTrpIleLeuLysThrIleAsnLeuTrpProG : 39 !:!!!:||||||:!:||||||! !||||||:!:|||||| !!|||..! !||||||! SerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProL 262844 : AGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCAC : 262901 40 : lnProProGlyAlaSerIleIleLysLysIleArgSerGluPheLeuIleLeuThrCy : 58 ! !! !!..! !|||! !!!::!!::!|||! !!!! .!!||||||:!!..!|| euSerAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCy 262902 : TGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTG : 262958 59 : sTyrCysLeuMetPheGlyThrMetValProSerGlyLeuSerIlePheIleGluSer : 77 ||||||||||!!:.!...!|||:!::!!|||||| !||| !||| !!:!!|||:!! sTyrCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAla 262959 : TTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCC : 263015 78 : GlnGluThrLeuAspValLysLeuArgSerPheGlyProLeuThrPheTrpPheMetA : 97 |||!.!!!! !!:!!||||||!:! !.!!||||||||| ! ||||||:!:! ---GluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValG 263016 : ---GAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCG : 263072 98 : laMetIleAsnTyrSerCysLeuLeuLeuHisIleAspAspIleArgSerCysValGl : 116 .!||||||||||||!!!!! ||||||||||||! ! ! ||||||!:!.!!||||||:! lyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGl 263073 : GTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCA : 263129 117 : uHisMetLysAlaAspTrpArgIleValArgArgSerGluGluArgGlnValMetLeu : 135 !|||:!!:!!! !|||||| !!||||||! !|||! !|||!!:!:!!:::!!|||||| nHisValGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeu 263130 : ACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTG : 263186 136 : LysAsnAlaArgIleGlyArgPheIleValGlyPheCysAlaValPheMetHisSerG : 155 |||||||||!:! !||||||!:!:!:!.!!.!! !||||||:!!||||||!!.!!!. LysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrS 263187 : AAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGA : 263246 156 : lyValLeuThrPheAsnThrIleArgGlyLeuSerLysAspValIleTyrThrGluAs : 174 !!:!!:!! ! ! !:!!! !!.!!!!!!!! !.!.|||||| ! !! || erIleMetCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAs 263247 : GCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAA : 263303 175 : nSerSerValLeuValArgGlyLeuProTyrProPheTyrSerArgIleLeuAspAla : 193 |..!!!! !:!!:!!||| !||||||! !||| ! |||!.!..!|||:!! !.! nGluThrArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProVal 263304 : CGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTC : 263360 194 : HisTyrSerProAlaTyrGluPheValPheLeuLeuGlnCysValSerThrPheLeuP : 213 !! !:!|||.!! !!|||.!! !!.!! ! !|||! !:!!||| !|||:!! AspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleV 263361 : GACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCG : 263420 214 : heAsnSerValThrValAlaValCysGlyLeuAlaAlaValPheValMetHisAlaCy : 232 !!!.!:!!..!||||||!.!!.!! !|||:!!.!!|||||||||!.! |||||||| alThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCy 263421 : TCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTG : 263477 233 : sGlyGlnLeuArgIleLeuMetSerTrpLeuAspAsnLeuIleAsp<-><->GlyAsn : 249 ||||||||||!.!:!:||||||||||||:!! .!.!!!:!::!! !!:!! sGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAsp 263478 : CGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGAT : 263534 250 : GluArgAsnIleSerValArgArgLysPheAlaIleIleValGluHisHisLeuArg{ : 269 |||!.!!!.! ! ! ! !! !:!!.!.!.!:!:|||||||||||||||||||||{ GluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArg{ 263535 : GAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGA{ : 263594 270 : V} >>>> Target Intron 1 >>>> {al}LeuAsnPheThrSerArgIleGl : 277 !} 72 bp { !}! !!:!|||! !..!||||||:! A}-+ -+{sp}CysSerPheIleAspArgIleLy 263595 : G}tt.........................cg{AT}TGTAGTTTCATAGATCGTATTAA : 263690 278 : uAsnIleThrAsnMetIleCysLeuValGluLeuValGlyCysThrMetHisIleCys : 296 !|||:!:! !!:!! !||||||!!!||||||||| !! !..!|||:!! !!|||||| sAsnValMetSerThrIleCysPheValGluLeuPheLysAlaThrLeuAspIleCys 263691 : GAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCAAGGCTACGCTGGATATATGC : 263747 297 : {Le} >>>> Target Intron 2 >>>> {u}LeuGlyTyrTyrCysIleMetA : 305 {:!} 764 bp {!}:!! ! ! !! !.!!..!! {Il}+- +-{e}IleThrIleAspValPheGlnG 263748 : {AT}gc.........................aa{T}ATAACAATTGACGTTTTTCAGG : 264538 306 : spTrpValHisAspAsnLysGlnAsnIleValSerTyrCysMetLeuLeuThrSerIl : 324 !:|||! ! ! ! ::: ||||||:::..!!!!|||! !|||:!!|||! !|||!! luTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleSerMe 264539 : AATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATACTGATATCAAT : 264595 325 : eThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln : 341 : ! !|||||||||:!!.!.|||||||||||||||||||||!!!|||||| tCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGln 264596 : GTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcag : 264648 vulgar: CbirOr28 19 341 . KQ414889.1 262843 264648 + 575 M 58 174 G 1 0 M 169 507 G 0 6 M 21 63 S 0 1 5 0 2 I 0 68 3 0 2 S 1 2 M 27 81 S 0 2 5 0 2 I 0 760 3 0 2 S 1 1 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262844 264648 575 + . gene_id 9 ; sequence CbirOr28 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262844 263594 . + . KQ414889.1 exonerate:protein2genome:local exon 262844 263594 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 263595 263596 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 263595 263666 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263665 263666 . + . intron_id 0 ; splice_site "CG" KQ414889.1 exonerate:protein2genome:local cds 263667 263751 . + . KQ414889.1 exonerate:protein2genome:local exon 263667 263751 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263752 263753 . + . intron_id 2 ; splice_site "GC" KQ414889.1 exonerate:protein2genome:local intron 263752 264515 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264514 264515 . + . intron_id 1 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 264516 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264516 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262844 264648 575 + . alignment_id 9 ; Query CbirOr28 ; Align 262844 20 174 ; Align 263018 79 507 ; Align 263531 248 63 ; Align 263669 270 81 ; Align 264517 298 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 519 Query range: 19 -> 270 Target range: 266631 -> 267387 20 : AsnGluTyrSerIleGlnIleIleArgTrpIleLeuLysThrIleAsnLeuTrpProG : 39 !:!!!:||||||:!:|||:!:! !||||||.!!|||||| !!|||..! !||||||! SerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProP 266632 : AGCGATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGC : 266689 40 : lnProProGlyAlaSerIleIleLysLysIleArgSerGluPheLeuIleLeuThrCy : 58 ! ! !! !.!!|||! !:!!:!!::!||| !||| ! !||||||:!!! !|| roLeuSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCy 266690 : CGTTGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTG : 266746 59 : sTyrCysLeuMetPheGlyThrMetValProSerGlyLeuSerIlePheIleGluSer : 77 |||||||! !!!:.!. !|||:!::!!|||!!! !!!! !:!! !!:!:||| sTyrCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGlu--- 266747 : CTACTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAG--- : 266803 78 : GlnGluThrLeuAspValLysLeuArgSerPheGlyProLeuThrPheTrpPheMetA : 97 .!.|||!:!:!! !..!|||:!!!:! !||||||||||||!:! !||||||:!:! AspGluSerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValG 266804 : GACGAGAGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCG : 266860 98 : laMetIleAsnTyrSerCysLeuLeuLeuHisIleAspAspIleArgSerCysValGl : 116 .! |||||||||!!! |||||||||!.!! ! ! !!:||||||.!!|||||||| lyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGl 266861 : GAGGAATTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGA : 266917 117 : uHisMetLysAlaAspTrpArgIleValArgArgSerGluGluArgGlnValMetLeu : 135 |||||||:!!.!!|||||||||||||||! !||| !!|||!!:!:!|||||||||||| uHisMetGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeu 266918 : GCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTG : 266974 136 : LysAsnAlaArgIleGlyArgPheIleValGlyPheCysAlaValPheMetHisSerG : 155 |||||||||||||||||||||!:!|||!.! !|||||||||!.!||||||!!.!!!| LysAsnAlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysG 266975 : AAGAACGCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCG : 267034 156 : lyValLeuThrPheAsnThrIleArgGlyLeuSerLysAspValIleTyrThrGluAs : 174 |||||||| !!:! !..!|||! !!.!!!!!!!! !.!...!:!: ! ..!! || lyValLeuGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAs 267035 : GTGTTCTCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAA : 267091 175 : nSerSerValLeuValArgGlyLeuProTyrProPheTyrSerArgIleLeuAspAla : 193 |..!!!! !:!!|||!.! !||||||! ! !! !!|||!.!!:!!!::!!! !.! nGluThrArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaVal 267092 : CGAGACTAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTT : 267148 194 : HisTyrSerProAlaTyrGluPheValPheLeuLeuGlnCysValSerThrPheLeuP : 213 !! !||||||.!! !!|||.!!|||.!!:!!! !|||! !|||||| !|||:!! AspThrSerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleV 267149 : GATACCAGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCG : 267208 214 : heAsnSerValThrValAlaValCysGlyLeuAlaAlaValPheValMetHisAlaCy : 232 ! |||||| !..!|||!.!!.!! !.!!|||||||||||||||!.! |||||||| alAsnSerSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCy 267209 : TGAATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTG : 267265 233 : sGlyGlnLeuArgIleLeuMetSerTrpLeuAspAsnLeuIleAsp<->GlyAsnGlu : 250 ||||||||||!!!:!:||||||! !|||:!! ! .!.!!!:!::!! ..!!..!!: sGlyGlnLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAsp 267266 : CGGACAGCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGAT : 267322 251 : ArgAsnIleSerVal<->ArgArgLysPheAlaIleIleValGluHisHisLeuArgV : 269 !!!|||! !:!||| ! !|||.!!!.!:!::!!||||||||||||||||||| SerAsnLysAsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgV 267323 : AGCAATAAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAG : 267382 270 : alLeu : 270 ||||| alLeu 267383 : TTTTG : 267387 vulgar: CbirOr28 19 270 . KQ414889.1 266631 267387 + 519 M 57 171 G 1 0 M 170 510 G 0 3 M 8 24 G 0 3 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266632 267387 519 + . gene_id 10 ; sequence CbirOr28 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266632 267387 . + . KQ414889.1 exonerate:protein2genome:local exon 266632 267387 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 266632 267387 519 + . alignment_id 10 ; Query CbirOr28 ; Align 266632 20 171 ; Align 266803 78 510 ; Align 267316 248 24 ; Align 267343 256 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 501 Query range: 11 -> 270 Target range: 256622 -> 257402 12 : ValSerProThrTyrLeuAlaAspAsnGluTyrSerIleGlnIleIleArgTrpIleL : 31 |||!.! !!!.!!:! !::! !!!:!!!:||||||:!!|||:!:! !||||||.!!| ValLysThrAsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheL 256623 : GTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCC : 256680 32 : euLysThrIleAsnLeuTrpProGlnProProGlyAlaSerIleIleLysLysIleAr : 50 ||||| !!|||..! !||||||! !! !!..!.!!!!!! !:!!:!!::!! ! euLysProIleGlyAlaTrpProProSerSerSerThrThrThrLeuGluArgAsnVa 256681 : TGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCGAAACGT : 256737 51 : gSerGluPheLeuIleLeuThrCysTyrCysLeuMetPheGlyThrMetValProSer : 69 !||| !!|||! !:!!..!|||||| !!! !!!:!!. !|||:!!:!!|||!!! lSerIleValLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIleProCys 256738 : TTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGT : 256794 70 : GlyLeuSerIlePheIleGluSerGlnGluThrLeuAspValLysLeuArgSerPheG : 89 !||| !:!!|||:!!!!: .!.!!:!:!!!! ! :::|||:::::::::|||| LeuLeuHisValPheLeuAsp---AspAspSerPheTyrMetLysValLysAsnPheG 256795 : TTGCTCCATGTATTTCTTGAC---GACGACAGTTTCTAcatgaaagtgaaaaatttcg : 256851 90 : lyProLeuThrPheTrpPheMetAlaMetIleAsnTyrSerCysLeuLeuLeuHisIl : 108 |||||:!!!:! !|||.!!!!:::! !||||||!!!! |||||||||!!. lyProMetSerHisTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGl 256852 : gtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGG : 256908 109 : eAspAspIleArgSerCysValGluHisMetLysAlaAspTrpArgIleValArgArg : 127 ! ! |||||||||! !||||||||||||!!::!!.!!|||||||||!!:||||||||| yLysAspIleArgTyrCysValGluHisIleGluThrAspTrpArgMetValArgArg 256909 : AAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGG : 256965 128 : SerGluGluArgGlnValMetLeuLysAsnAlaArgIleGlyArgPheIleValGlyP : 147 ..!:!!!!:!:!|||||||||:!!||||||||||||.!!||||||!:!:!:!.! !| GluLysAspGlnGlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrP 256966 : GAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACAT : 257025 148 : heCysAlaValPheMetHisSerGlyValLeuThrPheAsnThrIleArgGlyLeuSe : 166 ||||||||!.!.!!|||!!.|||||||||... ||| ..! !!.!|||!: heCysAlaAlaIleMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAs 257026 : TTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAA : 257082 167 : rLysAspValIleTyrThrGluAsnSerSerValLeuValArgGlyLeuProTyrPro : 185 !! !!!::!!|||:!!..!! !|||..!!!!..!:!!||||||! !|||||| ! !! nThrGluIleIleHisValGlyAsnGluThrThrIleValArgValLeuProValThr 257083 : CACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACC : 257139 186 : PheTyrSerArgIleLeuAspAlaHisTyrSerProAlaTyrGluPheValPheLeuL : 205 ! |||!.!!:!:!:|||:!!!.! !! ! ||||||.!! !!|||.!!||| !!!!!: ValTyrLysLysLeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheM 257140 : GTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTA : 257199 206 : euGlnCysValSerThrPheLeuPheAsnSerValThrValAlaValCysGlyLeuAl : 224 !!||| ! !|||:!!.!!:!! !.!!!! !||||||::!:!!! !.!!||||| etGlnThrTrpSerSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAl 257200 : TGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGC : 257256 225 : aAlaValPheValMetHisAlaCysGlyGlnLeuArgIleLeuMetSerTrpLeuAsp : 243 ||||||||||!.!! ||||||! !|||||||||! !:!:||||||||||||:!! aAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThr 257257 : GGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACA : 257313 244 : AsnLeuIleAsp<-><->GlyAsnGluArgAsnIleSerValArgArgLysPheAlaI : 261 .!.!!!:!::!! !!|||......... !!:!:!!.!.!.!: GluPheValAsnGluSerArgAsnArgGluLysThrPheProPheLysGlnIleGlyV 257314 : GAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCG : 257373 262 : leIleValGluHisHisLeuArgValLeu : 270 !:||||||||||||||||||||||||||| alIleValGluHisHisLeuArgValLeu 257374 : TGATTGTGGAGCATCATTTAAGAGTGCTG : 257402 vulgar: CbirOr28 11 270 . KQ414889.1 256622 257402 + 501 M 65 195 G 1 0 M 170 510 G 0 6 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256623 257402 501 + . gene_id 11 ; sequence CbirOr28 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256623 257402 . + . KQ414889.1 exonerate:protein2genome:local exon 256623 257402 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 256623 257402 501 + . alignment_id 11 ; Query CbirOr28 ; Align 256623 12 195 ; Align 256818 78 510 ; Align 257334 248 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 441 Query range: 7 -> 272 Target range: 221336 -> 222131 8 : AsnProValAsnValSerProThrTyrLeuAlaAspAsnGluTyrSerIleGlnIleI : 27 ::! !!..!..!|||..! ! !||| !.!!:!! :!!! |||:!:|||:!:! SerSerThrArgValGluTyrAspTyrLysThrAsnValLysLeuSerValGlnLeuS 221337 : TCTTCGACTCGTGTTGAATACGATTACAAGACGAACGTGAAATTGAGCGTGCAATTGA : 221394 28 : leArgTrpIleLeuLysThrIleAsnLeuTrpProGlnProProGlyAlaSerIleIl : 46 !||||||||||||||| !!|||..!:!!||||||.!. !! !!..! !|||! :! erArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaAsnIleSerThrVa 221395 : GCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGT : 221451 47 : eLysLysIleArgSerGluPheLeuIleLeuThrCysTyrCysLeuMetPheGlyThr : 65 !:!!!:! !! !! ! !.!.:!!! !:!!..!|||||| !!|||!!: ! ! lGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLeuIleThrPheLeu 221452 : AGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTC : 221508 66 : MetValProSerGlyLeuSerIlePheIleGluSerGlnGluThrLeuAspValLysL : 85 :!!||||||!!!.!!|||! !:!:.!!:!!||| !:!!!!:..!! !:!! !:!: LeuValProCysSerLeuTyrValIleLeuGluValGluAspValTyrAsn---ArgI 221509 : TTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTCTACAAT---AGAA : 221565 86 : euArgSerPheGlyProLeuThrPheTrpPheMetAlaMetIleAsnTyrSerCysLe : 104 !!!:!! !!!.|||||||||!:!|||!! ! ||||||.!.:!!!!.||| ! || leLysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysTyrHisLeuLe 221566 : TCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTT : 221622 105 : uLeuLeuHisIleAspAspIleArgSerCysValGluHisMetLysAlaAspTrpArg : 123 |:!!|||:!! :!!|||||||||..!|||:!!|||!.!!!::!! !||||||!:! uIleLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTrpAspTrpLys 221623 : GATACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAG : 221679 124 : IleValArgArgSerGluGluArgGlnValMetLeuLysAsnAlaArgIleGlyArgP : 143 ! !:!!! ! !|||:!!!!:!:!.!.:!!|||:!!:!!||||||! !.!!|||||| AsnIleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIlePheGlyArgA 221680 : AATATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGC : 221739 144 : heIleValGlyPheCysAlaValPheMetHisSerGlyValLeuThrPheAsnThrIl : 162 :!::!! !.!!|||.!! !!||||||:!!|||||| ::: ::: ! rgLeuIleMetIleCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAl 221740 : GATTGATCATGATCTGCACATTTTTCATGTACAGTggtttcgttttttattacatAGC : 221796 163 : eArgGlyLeuSerLysAspValIleTyrThrGluAsnSerSerValLeuValArgGly : 181 !! ! !!!!||| !! ! !||| !.!!:!!:!! :::||| ! aIleProPheSerValGlyLysIleProAlaGlnAspValAsnValThrPheIlePro 221797 : CATACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCA : 221853 182 : LeuProTyrProPheTyrSerArgIleLeuAspAlaHisTyrSerProAlaTyrGluP : 201 :!! !!:!||||||! !!! !|||:!!|||.!!!..|||||||||!.! !!|||. MetValPheProPheSerArgPheIleValAspThrArgTyrSerProValAsnGluI 221854 : ATGGTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGA : 221913 202 : heValPheLeuLeuGlnCysValSerThrPheLeuPheAsnSerValThrValAlaVa : 220 !!:!!|||! !|||||| !:!!:!! ! !|||.!.:!!|||:!!||| !|||!. leLeuPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAl 221914 : TTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGC : 221970 221 : lCysGlyLeuAlaAlaValPheValMetHisAlaCysGlyGlnLeuArgIleLeuMet : 239 !|||.!!|||!.!|||:!!|||!.!:!!|||||||||||||||:!!!:!:!:|||||| aCysSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMet 221971 : TTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATG : 222027 240 : SerTrpLeuAspAsnLeuIleAspGlyAsn<->GluArgAsnIleSerValArgArgL : 258 ||||||||| ! :!!||||||:!!|||... !!:! ! !! !!:!||| !|||! SerTrpLeuLysHisLeuIleAsnGlyArgAlaAspMetCysAsnAsnValAspArgA 222028 : AGCTGGCTGAAACATTTGATCAACGGCCGGGCGGATATGTGTAACAACGTGGATAGGA : 222087 259 : ysPheAlaIleIleValGluHisHisLeuArgValLeuAsnPhe : 272 :!.!.|||! ||||||.!.!!.|||:!!|||:!!|||.!.!:! rgIleAlaLysIleValAsnGlnHisValArgIleLeuGlnTyr 222088 : GAATAGCGAAGATTGTGAATCAACACGTTCGAATATTGCAGTAT : 222131 vulgar: CbirOr28 7 272 . KQ414889.1 221336 222131 + 441 M 75 225 G 1 0 M 166 498 G 0 3 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221337 222131 441 + . gene_id 12 ; sequence CbirOr28 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221337 222131 . + . KQ414889.1 exonerate:protein2genome:local exon 221337 222131 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221337 222131 441 + . alignment_id 12 ; Query CbirOr28 ; Align 221337 8 225 ; Align 221562 84 498 ; Align 222063 250 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 428 Query range: 22 -> 270 Target range: 226933 -> 227677 23 : SerIleGlnIleIleArgTrpIleLeuLysThrIleAsnLeuTrpProGlnProProG : 42 |||||||||:!:! !||||||:!:|||||| !!:!!..!:!!||||||..! !!! ! SerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgL 226934 : AGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCA : 226991 43 : lyAlaSerIleIleLysLysIleArgSerGluPheLeuIleLeuThrCysTyrCysLe : 61 !::!||| !||| !!:! ! !||| !!!.:!! !!!! !||||||...|| ysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLe 226992 : AAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCT : 227048 62 : uMetPheGlyThrMetValProSerGlyLeuSerIlePheIleGluSerGlnGluThr : 80 |||| ! ! !:!!||| !!|||||||||! !:!: !!:!!||| !:!!! .!! uMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAla 227049 : GATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCT : 227105 81 : LeuAspValLysLeuArgSerPheGlyProLeuThrPheTrpPheMetAlaMetIleA : 100 ! !:!!..! |||!:!! !.!!||||||:!!:!!|||!:: |||:!!:!::!!! TyrAsnThr---LeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuL 227106 : TACAACACG---CTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCA : 227162 101 : snTyrSerCysLeuLeuLeuHisIleAspAspIleArgSerCysValGluHisMetLy : 119 !.|||||| ||| !!!!||| |||||||||! !..!|||||||||!..!!:|| ysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIleLy 227163 : AGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAA : 227219 120 : sAlaAspTrpArgIleValArgArgSerGluGluArgGlnValMetLeuLysAsnAla : 138 | !||||||!:!! !:!!||| ! !|||!!:|||.!.||||||:!!! ! !!||| sTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyrAla 227220 : ATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCG : 227276 139 : ArgIleGlyArgPheIleValGlyPheCysAlaValPheMetHisSerGlyValLeuT : 158 ! !|||||| :!::!! !.!!|||.!! !!|||:!: !|||... ::: TyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheValP 227277 : TATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtat : 227336 159 : hrPheAsnThrIleArgGlyLeuSerLysAspValIleTyrThrGluAsnSerSerVa : 177 ||| ! !:!! ! !:!!!:! ! !:!! ||||||:!!.!!!:! hePheTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGlyAsnHi 227337 : ttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCA : 227393 178 : lLeuValArgGlyLeuProTyrProPheTyrSerArgIleLeuAspAlaHisTyrSer : 196 ! ! !! ! !:!!|||!:!|||||| !.!! !||| !|||!.!!.!|||||| sSerTyrIleGlnMetProPheProPheProLysIleIleAlaAspValArgTyrSer 227394 : CAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGC : 227450 197 : ProAlaTyrGluPheValPheLeuLeuGlnCysValSerThrPheLeuPheAsnSerV : 216 ||| ! !!|||.!! !!|||! !:!!|||! !|||!!! !.!!:!!!!.:!!.!!| ProPheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuHisGlyV 227451 : CCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTG : 227510 217 : alThrValAlaValCysGlyLeuAlaAlaValPheValMetHisAlaCysGlyGlnLe : 235 ||||| !|||!.!|||.!!:!!||||||:!!.!!!.!:!:|||||||||||||||:! alThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMe 227511 : TCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGAT : 227567 236 : uArgIleLeuMetSerTrpLeuAspAsnLeuIleAspGlyAsn<->GluArgAsnIle : 253 !..!:!:|||:!!|||||||||! :!!||||||||||||!.. !!:! !!:!! ! tGluValLeuValSerTrpLeuGlyHisLeuIleAspGlyArgAlaAspMetSerLys 227568 : GGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGCAGAGCGGATATGAGCAAA : 227624 254 : SerValArgArgLysPheAlaIleIleValGluHisHisLeuArgValLeu : 270 !!!:!! ! !!:!.!!|||! !|||||| ||||||:!!|||:!!||| ThrLeuAspAspArgIleAlaSerIleValThrHisHisValArgIleLeu 227625 : ACACTGGATGATAGAATCGCTAGCATCGTCACTCACCACGTTCGAATATTG : 227677 vulgar: CbirOr28 22 270 . KQ414889.1 226933 227677 + 428 M 61 183 G 1 0 M 165 495 G 0 3 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226934 227677 428 + . gene_id 13 ; sequence CbirOr28 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226934 227677 . + . KQ414889.1 exonerate:protein2genome:local exon 226934 227677 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226934 227677 428 + . alignment_id 13 ; Query CbirOr28 ; Align 226934 23 183 ; Align 227117 85 495 ; Align 227615 250 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 358 Query range: 18 -> 394 Target range: 204227 -> 206401 19 : AspAsnGluTyrSerIleGlnIleIleArgTrpIleLeuLysThrIleAsnLeuTrpP : 38 ||| ..!|||:!!! !!::.!!:!:!:! !|||||| !! !:!!..! !|||| AspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaTrpP 204228 : GACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGTGGC : 204285 39 : roGlnProProGlyAlaSerIleIleLysLysIleArgSerGluPheLeuIleLeuTh : 57 || ||| !..!:!!||| .!!! !!:!:!! ! !!..!.!. ! !:!!.. roIleProValAsnSerSerProPheThrArgLeuValArgArgIleGluHisValVa 204286 : CGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGTAGT : 204342 58 : rCysTyrCysLeuMetPheGlyThrMetValProSerGlyLeuSerIlePheIleGlu : 76 ! !||| |||...||| !!!:||||||.!! !|||! !:!:|||:!::!! lThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheLeuLys 204343 : CACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTGAAG : 204399 77 : SerGlnGluThrLeuAspValLysLeuArgSerPheGlyProLeuThrPheTrpPheM : 96 :!!:!!!.! ! ! :!!:::|||!:!! !.!!||||||:!!..! !!! !! ---GluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSerI 204400 : ---GAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCA : 204456 97 : etAlaMetIleAsnTyrSerCysLeuLeuLeuHisIleAspAspIleArgSerCysVa : 115 !: !.!..!!!!.|||||| !:!!|||! !!..|||||| ! |||!:!!.! !!:! leGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSerLe 204457 : TACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGTTT : 204513 116 : lGluHisMetLysAlaAspTrpArgIleValArgArgSerGluGluArgGlnValMet : 134 !.!. !!!:!:! !|||||| |||! ! !! !..!|||.!.||| !:!!.!. uAsnThrIleArgArgAspTrp---IleGluAlaThrAspGluAsnArgLeuIlePhe 204514 : GAACACCATCAGACGCGACTGG---ATAGAGGCTACGGATGAAAATCGGTTGATTTTC : 204567 135 : LeuLysAsnAlaArgIleGlyArgPheIleValGlyPheCysAlaValPheMetHisS : 154 ! !..!!!.|||!:!||||||||| :!::!! !.!!...|||!.! !|||:!!. ArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetTyrG 204568 : CGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGTACG : 204627 155 : erGlyValLeuThrPheAsnThrIleArgGlyLeuSerLysAspValIleTyrThrGl : 173 !!|||! !||| !!:!!..||||||! ! !|||! !!:!! ..!||| ||| lyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleValThrPr 204628 : GCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTAACACC : 204684 174 : uAsnSerSerValLeuValArgGlyLeuProTyrProPheTyrSerArgIleLeuAsp : 192 :!! !:!||| !:!!||| !||||||! !||| !!||| ......::: oAsp---AsnValThrIleArgProLeuProCysProValTyrPheValPhePheAsn 204685 : TGAT---AACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaac : 204738 193 : AlaHisTyrSerProAlaTyrGluPheValPheLeuLeuGlnCysValSerThrPheL : 212 ! !!!. !|||||| !||||||.!!||||||:!!|||||| !:!!:!! !|||: GluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheV 204739 : GAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTG : 204798 213 : euPheAsnSerValThrValAlaValCysGlyLeuAlaAlaValPheValMetHisAl : 231 !! ! !!:!!|||! ! !!.!..!||||||:!!..!|||:!!||||||:!:||||| alThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAl 204799 : TTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGC : 204855 232 : aCysGlyGlnLeuArgIleLeuMetSerTrpLeuAspAsnLeuIleAsp<->GlyAsn : 249 ||||.!!..!||||||||||||:!!!:! !:!!:!! |||:!:||| !.!:!! aCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAlaAsp 204856 : GTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCGGAC : 204912 250 : GluArgAsnIleSerValArgArgLysPheAlaIleIleValGluHisHisLeuArgV : 269 !! !.!.! ! !|||!.!||||||.!!||| !|||||||||:!!!!. !!:!: MetThrGluThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrLysI 204913 : ATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGAAGA : 204972 270 : alLeu{As} >>>> Target Intron 1 >>>> {n}PheThrSerArgIleGl : 277 !! !{!.} 1047 bp {.} !|||.!!||| leLys{Ar}++ ++{g}AsnThrGlyArgSerCy 204973 : TAAAG{AG}gt.........................ag{A}AATACAGGACGATCGTG : 206043 278 : uAsnIleThrAsnMetIleCysLeuValGluLeuValGlyCysThrMetHisIleCys : 296 !! !.!...! ! ! :!! !:!!! !:!! !|||||| !.! ! ! sPheArgAsnGlyArgThrIleIleGlnGlnArgLeu***CysThrSerArgCysArg 206044 : TTTTAGGAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGA : 206100 297 : LeuLeuGlyTyrTyrCysIleMetAspTrpValHisAspAsnLysGlnAsnIleValS : 316 ! !|||! !:!!! !....!!:!: !!!::!.! .....!!.. :!!! TyrLeuValHisSerAlaPheLeuTyrTyrAlaThrSerGlySerPheLeuSerIleL 206101 : TATCTTGTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCA : 206160 317 : erTyrCysMetLeuLeuThrSerIleThrPheAsnIlePheIlePheCysTyrIleGl : 335 .!! ! !!: !! ! !!!!! !|||!:: ::::::|||||| !:!! ysCysValIleThrTyrGln***SerThrTrpIleLeuTrpIlePheLeuThrLeuTh 206161 : AGTGCGTGATTACGTATCAATGAAGTACGTGGattctttggatttttttaaCTCTTAC : 206217 336 : yGluIleLeuSerGlu-----GlnGlyGlyGlnIleGlyArgSerAlaTyrMetThrA : 353 !..!! !:!!!!! #####|||..! ! :!:||| !!!!:!!! !! !..!| rArgSerIleThrIle#####GlnAsnHisValValGlyLeuThrSerCysThrValA 206218 : TAGAAGTATTACCATTTTTAACAGAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 354 : snTrpTyrLeuLeuProGlyAsnThrAlaLeuGlyLeuThrMetIleIleLeuArgSe : 372 ||||||||! !||||||..!!.. !|||! !..!:!!! !:!!|||||| !! !|| snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 373 : rAsnValAlaLeuLysIleThrAlaGlyLysPheValGlnLeuSerPheValThrPhe : 391 |||| ! !!:!!|||:!!||||||||||||.!. !!:!!:!!|||!!.!.!!:!||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 392 : GlyGlyVal : 394 !! !||| ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: CbirOr28 18 394 . KQ414889.1 204227 206401 + 358 M 58 174 G 1 0 M 45 135 G 1 0 M 51 153 G 1 0 M 72 216 G 0 3 M 23 69 S 0 2 5 0 2 I 0 1043 3 0 2 S 1 1 M 69 207 F 0 5 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204228 206401 358 + . gene_id 14 ; sequence CbirOr28 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 204228 204979 . + . KQ414889.1 exonerate:protein2genome:local exon 204228 204979 . + . insertions 3 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 204980 204981 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 204980 206026 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206025 206026 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206027 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206027 206401 . + . insertions 0 ; deletions 0 ; frameshifts 5 KQ414889.1 exonerate:protein2genome:local similarity 204228 206401 358 + . alignment_id 14 ; Query CbirOr28 ; Align 204228 19 174 ; Align 204402 78 135 ; Align 204537 124 153 ; Align 204690 176 216 ; Align 204909 248 69 ; Align 206028 272 207 ; Align 206240 341 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 331 Query range: 179 -> 394 Target range: 300201 -> 302036 180 : ArgGlyLeuProTyrProPheTyrSerArgIleLeuAspAlaHisTyrSerProAlaT : 199 !:! !||| !!|||||| !|||..! !!.!!:!!|||.!!!!. !||||||.!!| LysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnThrSerProThrT 300202 : AAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAACCAGTCCTACCT : 300259 200 : yrGluPheValPheLeuLeuGlnCysValSerThrPheLeuPheAsnSerValThrVa : 218 |||||...||||||.........||| !!:!!.!!.!.:!!.!. !!!:!||||||.. yrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTyrAsnValThrTh 300260 : ACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTACAACGTGACAAC : 300316 219 : lAlaValCysGlyLeuAlaAlaValPheValMetHisAlaCysGlyGlnLeuArgIle : 237 !|||!.!! !.!!|||||||||:!!||||||! ||| !|||||||||:!!!:!||| rAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGlyGlnIleGlnIle 300317 : GGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGACAGATTCAGATA : 300373 238 : LeuMetSerTrpLeuAspAsnLeuIleAspGlyAsnGluArgAsnIleSerValArgA : 257 ! !|||:!! ! |||!!::!!|||:!:!!: !!!..! !..!!!. !..!! !! ! GlnMetAlaArgLeuGluAspLeuValGluArgThrGlyGluLysAspAspGlyProA 300374 : CAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGGGAGAGAAGGACGACGGTCCTG : 300433 258 : rgLysPheAlaIleIleValGluHisHisLeuArgValLeu{As} >>>> Target : 271 ! !!.!.!:!!||||||..! !!|||:!!!:!||||||{!.} 11 spProLeuValValIleValArgAspHisValLysValLeu{Ar}++ 300434 : ATCCTTTGGTCGTTATCGTTCGAGATCACGTGAAGGTTTTA{AG}gt........... : 300479 272 : Intron 1 >>>> {n}PheThrSerArgIleGluAsnIleThrAsnMetIleCys : 284 10 bp {.} ! !!!!! !.!!... ! !||| ! :!!||| ++{g}AspProCysSerPheArg***ProThrPheHisLeuCys 300480 : ..............ag{A}GACCCGTGTTCCTTCCGTTAGCCAACTTTTCATCTCTGC : 301624 285 : LeuValGluLeuValGlyCysThrMetHisIleCysLeuLeuGlyTyrTyrCysIleM : 304 ||| |||:!::!! ! !!!||| !! !!! .!! AlaValIleLysPheGluSerThrLeuAsnAlaLysPheLeuArgValIle***Phe* 301625 : gctgtaattaaatttgaatctACTTTAAATGCAAAGTTTTTACGAGTAATTTGATTTT : 301684 305 : etAspTrpValHisAspAsnLysGlnAsnIleValSerTyrCysMetLeuLeuThrSe : 323 !!!:||| !:!!..!:!!! ! !!!::!!!!!!:!! !! ||||||||||| **GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSe 301685 : AGGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTC : 301741 324 : rIleThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln > : 342 |.!!||||||||||||||||||||||||||||||||||||||||||||||||||| rPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301742 : GTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt. : 301800 343 : >>> Target Intron 2 >>>> GlyGlyGlnIleGlyArgSerAlaTyrMetTh : 352 80 bp !!.!!||||||||| !:!!:!!||| !! ++CysSerGlnIleGlySerAlaSerTyrGluIl 301801 : ........................agTGTAGCCAAATTGGTTCAGCATCGTACGAGAT : 301908 353 : rAsnTrpTyrLeuLeuProGlyAsnThrAlaLeuGlyLeuThrMetIleIleLeuArg : 371 !:!!|||||| !||||||!.!!!.! !|||! !! !|||! !:!::!!! !:!!! ! eAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIle 301909 : CGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATA : 301965 372 : SerAsnValAlaLeuLysIleThrAlaGlyLysPheValGlnLeuSerPheValThrP : 391 |||.!. ! !!! !|||:!!||||||||||||.!.:!!.!.||||||!!. !|||| SerGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrP 301966 : TCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACAT : 302025 392 : heGlyGlyVal : 394 ||.!!..!||| heSerSerVal 302026 : TCAGCTCTGTA : 302036 vulgar: CbirOr28 179 394 . KQ414889.1 300201 302036 + 331 M 91 273 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 70 210 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300202 302036 331 + . gene_id 15 ; sequence CbirOr28 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300202 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300202 300476 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300202 302036 331 + . alignment_id 15 ; Query CbirOr28 ; Align 300202 180 273 ; Align 301588 272 210 ; Align 301878 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 306 Query range: 270 -> 394 Target range: 257478 -> 258624 271 : AsnPheThrSerArgIleGluAsnIleThrAsnMetIleCysLeuValGluLeuValG : 290 !:!|||! !||| !||||||.!.:!:! !||| ||||||!!!:!!|||||| !! SerPheIleSerTyrIleGluGluValMetAsnArgIleCysPheLeuGluLeuPheA 257479 : AGTTTCATATCATATATCGAGGAAGTGATGAACCGAATATGTTTTTTAGAGTTGTTTA : 257536 291 : lyCysThrMetHisIleCysLeuLeuGlyTyrTyrCysIleMet >>>> Target : 305 !!||||||:!! !||||||:!!|||||||||||| !:!! ! 68 rgCysThrLeuAlaIleCysMetLeuGlyTyrTyrIleLeuAla++ 257537 : GATGCACGCTGGCTATATGCATGCTGGGATACTACATTCTTGCGgt............ : 257583 306 : Intron 1 >>>> AspTrpValHisAspAsnLysGlnAsnIleValSerTyrCysM : 319 4 bp :::||| ! ...::: ||||||::: ||||||! !| ++GluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheM 257584 : .............aggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTA : 258307 320 : etLeuLeuThrSerIleThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLe : 338 ||:!!|||! !|||::::::||||||||||||:::...|||||||||||||||||||| etIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLe 258308 : TGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATT : 258364 339 : uSerGluGln >>>> Target Intron 2 >>>> GlyGlyGlnIleGlyArgS : 348 |!!!|||||| 90 bp !! !:!!:!!||| ! uThrGluGln++ ++CysLysLysValGlyAspV 258365 : AACAGAACAGgt.........................agTGCAAGAAAGTTGGCGACG : 258484 349 : erAlaTyrMetThrAsnTrpTyrLeuLeuProGlyAsnThrAlaLeuGlyLeuThrMe : 367 !!.!|||||||||:!!||||||! !||||||! !!!.! ! !|||! !|||! !:! alValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLe 258485 : TGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTT : 258541 368 : tIleIleLeuArgSerAsnValAlaLeuLysIleThrAlaGlyLysPheValGlnLeu : 386 !:!!||| !||||||!:!|||!.!:!!:!!|||||||||||||||||| ...::! uValIleAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePheHisMet 258542 : GGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatG : 258598 387 : SerPheValThrPheGlyGlyVal : 394 |||.!! !||||||.!!! !||| SerIleTyrThrPheSerAspVal 258599 : TCCATTTACACATTCAGCGATGTG : 258624 vulgar: CbirOr28 270 394 . KQ414889.1 257478 258624 + 306 M 34 102 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 257479 258624 306 + . gene_id 16 ; sequence CbirOr28 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 257479 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257479 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 257479 258624 306 + . alignment_id 16 ; Query CbirOr28 ; Align 257479 271 102 ; Align 258265 305 111 ; Align 258466 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 259 Query range: 117 -> 270 Target range: 304413 -> 304866 118 : MetLysAlaAspTrpArgIleValArgArgSerGluGluArgGlnValMetLeuLysA : 137 :!:....!!! !::..! |||..! ! !..!!!:|||:!!:!!||||||||| LeuSerThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysT 304414 : CTCTCTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAAT : 304471 138 : snAlaArgIleGlyArgPheIleValGlyPheCysAlaValPheMetHisSerGlyVa : 156 !!!.!!:!!!:|||||| !:!:..! !.!!||||||:!!||||||:!!!!!|||! yrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGl 304472 : ACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGG : 304528 157 : lLeuThrPheAsnThrIleArgGlyLeuSerLysAspValIleTyrThrGluAsnSer : 175 ! !! !!:!:!!|||:!!! ! !!!!:!!! ! ..! |||..!!!:.!.! ! yThrIleTyrHisThrValMetGlnPheAlaThrGlyThr---TyrValAspGluTyr 304529 : CACCATTTATCACACGGTCATGCAGTTCGCGACCGGAACG---TATGTGGATGAGTAT : 304582 176 : SerValLeuValArgGlyLeuProTyrProPheTyrSerArgIleLeuAspAlaHisT : 195 !:! ! !:!!!:! !||| !|||||| !|||||| !:!!!!!|||!.!!!. AsnArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnT 304583 : AATCGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAA : 304642 196 : yrSerProAlaTyrGluPheValPheLeuLeuGlnCysValSerThrPheLeuPheAs : 214 |||||| !||||||!!.|||!:!!!!:!!!!.|||:!!!!! !!:!:!!.!! ! hrSerProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTy 304643 : CAAGCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTA : 304699 215 : nSerValThrValAlaValCysGlyLeuAlaAlaValPheValMetHisAlaCysGly : 233 !|||:!!|||!.!!.!!.!|||||||||||||||:!!|||!.!! |||||||||||| rSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGly 304700 : TTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGA : 304756 234 : GlnLeuArgIleLeuMetSerTrpLeuAspAsnLeuIleAspGlyAsnGluArgAsnI : 253 |||:!! !|||:!!|||||| ! |||! !:!!|||:!!:!!.!!!!.||| !::! GlnIleAspIleValMetSerArgLeuGlyAspLeuValAsnSerLysGluSerSer- 304757 : CAAATTGATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCATCT- : 304816 254 : leSerValArgArgLysPheAlaIleIleValGluHisHisLeuArgValLeu : 270 ..!:!! !!:!::!!!. ! !|||||||||||||||||||||:!!||| --AspLeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIleLeu 304817 : --GATTTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTA : 304866 vulgar: CbirOr28 117 270 . KQ414889.1 304413 304866 + 259 M 52 156 G 1 0 M 82 246 G 1 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304414 304866 259 + . gene_id 17 ; sequence CbirOr28 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304414 304866 . + . KQ414889.1 exonerate:protein2genome:local exon 304414 304866 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 304414 304866 259 + . alignment_id 17 ; Query CbirOr28 ; Align 304414 118 156 ; Align 304570 171 246 ; Align 304816 254 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 252 Query range: 304 -> 406 Target range: 272836 -> 273293 305 : AspTrpValHisAspAsnLysGlnAsnIleValSerTyrCysMetLeuLeuThrSerI : 324 :!:|||..! !! !!:!! |||!:!:!!..!!!!|||! !|||:!!|||! !|||! GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 325 : leThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln >>> : 342 !:|||||||||||||||||| |||||||||||||||||||||!!!|||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt... : 272950 343 : > Target Intron 1 >>>> GlyGlyGlnIleGlyArgSerAlaTyrMetThrA : 353 70 bp :::||||||..! !!.!|||||||||| ++CysLysLysIleGlyGluValValTyrMetThrA 272951 : ......................agtgtaaaaaaattggcGAGGTAGTTTACATGACGA : 273051 354 : snTrpTyrLeuLeuProGlyAsnThrAlaLeuGlyLeuThrMetIleIleLeuArgSe : 372 ||||||||! !|||||||||!!. ! !|||! !|||! !:!!||||||! !|||!! snTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCy 273052 : ACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATG : 273108 373 : rAsnValAlaLeuLysIleThrAlaGlyLysPheValGlnLeuSerPheValThrPhe : 391 !!:!|||!.!:!!|||||||||||||||!:!.!.|||! :!!||| ! !|||||| sSerValValIleLysIleThrAlaGlyArgIleValProMetSerValTyrThrPhe 273109 : CAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273165 392 : GlyGly >>>> Target Intron 2 >>>> ValIleLysSerAlaLeuAlaTy : 401 |||! ! 81 bp |||!!:|||||||||!!!||||| GlyAsp++ ++ValMetLysSerAlaPheAlaTy 273166 : GGCGATgt.........................aggtGATGAAAAGTGCGTTCGCGTA : 273276 402 : rLeuAsnLeuPheArg : 406 |||||||:!!.!.||| rLeuAsnMetLeuArg 273277 : CTTAAATATGCTACGA : 273293 vulgar: CbirOr28 304 406 . KQ414889.1 272836 273293 + 252 M 37 111 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 273293 252 + . gene_id 18 ; sequence CbirOr28 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273293 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273293 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 273293 252 + . alignment_id 18 ; Query CbirOr28 ; Align 272837 305 111 ; Align 273018 342 156 ; Align 273255 394 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 224 Query range: 302 -> 394 Target range: 224317 -> 224658 303 : IleMetAspTrpValHisAspAsnLysGlnAsnIleValSerTyrCysMetLeuLeuT : 322 .!!...:::||| ...:!! ! !:! |||!!!|||! !!!:||||||! PheGlnGluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuM 224318 : TTTCaggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCA : 224375 323 : hrSerIleThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGl : 341 !|||:::||||||||||||||||||||||||||||||||||||:!::!!:!!||||| etSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGl 224376 : TGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAca : 224432 342 : n >>>> Target Intron 1 >>>> GlyGlyGlnIleGlyArgSerAlaTyrM : 351 | 65 bp :::||||||::! !:!!|||| n++ ++CysGluLysIleGlyGlnValSerTyrM 224433 : ggt.........................agtgtgaaaaaattggacaAGTGTCGTACA : 224527 352 : etThrAsnTrpTyrLeuLeuProGlyAsnThrAlaLeuGlyLeuThrMetIleIleLe : 370 ||! !:!!||||||! !||| !!||||||! ! !||| !!! !! !:!!|||||| etIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAl 224528 : TGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGC : 224584 371 : uArgSerAsnValAlaLeuLysIleThrAlaGlyLysPheValGlnLeuSerPheVal : 389 !! !|||||| !:!!:!!|||:!:|||||||||!!..!.|||:!!|||!!!.!...! aMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThr 224585 : GATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACC : 224641 390 : ThrPheGlyGlyVal : 394 |||||||||! !||| ThrPheGlyAspVal 224642 : ACTTTCGGTGACGTA : 224658 vulgar: CbirOr28 302 394 . KQ414889.1 224317 224658 + 224 M 39 117 5 0 2 I 0 61 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224318 224658 224 + . gene_id 19 ; sequence CbirOr28 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224318 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224318 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224318 224658 224 + . alignment_id 19 ; Query CbirOr28 ; Align 224318 303 117 ; Align 224500 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 217 Query range: 18 -> 218 Target range: 294678 -> 295275 19 : AspAsnGluTyrSerIleGlnIleIleArgTrpIleLeuLysThrIleAsnLeuTrpP : 38 ||| ! ! !!|||:!!:!! ! !||| !!:!:|||||| !!|||..!||||||| AspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpP 294679 : GACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGC : 294736 39 : roGln<->ProProGlyAlaSerIleIleLysLysIleArgSerGluPheLeuIleLe : 56 ||! ! ! !.!!|||! !:!:!!.|||:!!! !||| !.!!|||||| roLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAl 294737 : CACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGC : 294793 57 : uThrCysTyrCysLeuMetPheGlyThrMetValProSerGlyLeuSerIlePheIle : 75 ! !||| ! !:!:.!. !..!:!:||||||!!!|||! ! .!!! !:!! aTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyr---PheCysVal 294794 : GTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATAC---TTCTGTGTA : 294847 76 : GluSerGlnGluThrLeuAspValLysLeuArgSerPheGlyProLeuThrPheTrpP : 95 ! :::...::: :::|||:!!!:! !.!.||||||:!! !!:!! . PheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerM 294848 : TTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTA : 294907 96 : heMetAlaMetIleAsnTyrSerCysLeuLeuLeuHisIleAspAspIleArgSerCy : 114 !.:!::!!|||:!!!..||||||||||||:!!||| ! ! !! .!!!:! !|| etLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCy 294908 : TGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTG : 294964 115 : sValGluHisMetLysAlaAspTrpArgIleValArgArgSerGluGluArgGlnVal : 133 |:!!||| !!!!::!! !||||||!:!:!::!! !!.! !!|||.!.||| !:!! sIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIle 294965 : CATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATC : 295021 134 : MetLeuLysAsnAlaArgIleGlyArgPheIleValGlyPheCysAlaValPheMetH : 153 |||:!!|||||||||! !:!! !!:! !!:..!! ! !! !.!!:!!.!.!!:: MetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleIleT 295022 : ATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCT : 295081 154 : isSerGlyValLeuThrPheAsnThrIleArgGlyLeuSerLysAspValIleTyrTh : 172 !!|||..!!.!:!!:!!!:!:!!.!!||| ... ...:::...:!: ! !. yrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGluAs 295082 : ACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGAGAA : 295138 173 : rGluAsnSerSerValLeuValArgGlyLeuProTyrProPheTyrSerArgIleLeu : 191 !:!!!!.!:!!:!..! :!!|||!.!|||||| !||| !|||..! !.!!:!! nLysLysAsnAsnThr---IleArgAlaLeuProIleProGlyTyrGluLeuPheVal 295139 : CAAGAAGAATAATACG---ATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTA : 295192 192 : AspAlaHisTyrSerProAlaTyrGluPheValPheLeuLeuGlnCysValSerThrP : 211 ||||||:!!! !||||||.!!||||||.!!:!! !! !! ! !|||! !:!!| AspAlaTyrSerSerProThrTyrGluIleIleArgThrHisLeuPheValTyrSerP 295193 : GACGCTTATTCCAGTCCTACCTACGAGATCATAAGAACTCATCTCTTTGTTTACTCGT : 295252 212 : heLeuPheAsnSerValThrVal : 218 ||!!! !!|||!.!..! !||| hePheValAsnLysThrGlyVal 295253 : TCTTCGTCAACAAAACTGGTGTC : 295275 vulgar: CbirOr28 18 218 . KQ414889.1 294678 295275 + 217 M 21 63 G 0 3 M 32 96 G 1 0 M 105 315 G 1 0 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294679 295275 217 + . gene_id 20 ; sequence CbirOr28 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294679 295275 . + . KQ414889.1 exonerate:protein2genome:local exon 294679 295275 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 294679 295275 217 + . alignment_id 20 ; Query CbirOr28 ; Align 294679 19 63 ; Align 294745 40 96 ; Align 294841 73 315 ; Align 295156 179 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 197 Query range: 304 -> 394 Target range: 277371 -> 277713 305 : AspTrpValHisAspAsnLysGlnAsnIleValSerTyrCysMetLeuLeuThrSerI : 324 !!:||| ! !!..!:!! |||!..!!:..!!!!:!!! !|||:!!|||! !|||! GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 325 : leThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGlnGly{G : 343 !: |||||||||||| ! ! |||||||||||||||||||||!!!||||||! !{ etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGlnVal{I 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAGGTA{A : 277486 344 : l} >>>> Target Intron 1 >>>> {y}GlnIleGlyArgSerAlaTyrMet : 351 } 72 bp {!}:!!:!!|||..! !!.!|||||| l}-+ +-{e}LysValGlyGluValValTyrMet 277487 : T}tt.........................aa{A}AAAGTTGGTGAGGTGGTTTATATG : 277582 352 : ThrAsnTrpTyrLeuLeuProGlyAsnThrAlaLeuGlyLeuThrMetIleIleLeuA : 371 ||||||||||||! !||||||! !!!. ! !|||..!||| !:!:||||||! !| ThrAsnTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuIleIleSerA 277583 : ACGAATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAA : 277642 372 : rgSerAsnValAlaLeuLysIleThrAlaGlyLysPheValGlnLeuSerPheValTh : 390 |||||!:!:::...:::||||||||||||||||||...:::|||:::||| ! !|| rgSerSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSerValTyrTh 277643 : GATCTAGCctggtaattaaaattaccgctggaaaattaattcaaatgtCCGTGTACAC : 277699 391 : rPheGlyGlyVal : 394 |||||||! !||| rPheGlyAspVal 277700 : GTTCGGCGATGTA : 277713 vulgar: CbirOr28 304 394 . KQ414889.1 277371 277713 + 197 M 38 114 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277713 197 + . gene_id 21 ; sequence CbirOr28 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277372 277487 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277487 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277488 277489 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 277488 277559 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277558 277559 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 277560 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277560 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277713 197 + . alignment_id 21 ; Query CbirOr28 ; Align 277372 305 114 ; Align 277561 344 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 191 Query range: 14 -> 237 Target range: 194150 -> 194807 15 : ThrTyrLeuAlaAspAsnGluTyrSerIleGlnIleIleArgTrpIleLeuLysThrI : 34 !.!||| ! !|||!.!||||||:!!:!!!:!:!! !!:! !:!!|||! ! !!| AsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProI 194151 : AATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGA : 194208 35 : leAsnLeuTrpProGlnProProGlyAlaSerIleIleLysLysIleArgSerGluPh : 53 ||..!:!!||||||::! ! ! |||:!! ! ! !:!:!!||| ! leGlyIleTrpProArgGluAsp------SerLeuArgAspArgValArgLeuPheAl 194209 : TCGGTATCTGGCCAAGGGAGGAT------TCTCTTCGCGACAGAGTCCGACTGTTCGC : 194259 54 : eLeuIleLeuThrCysTyrCysLeuMetPheGlyThrMetValProSerGlyLeuSer : 72 !! !! ! !..! !!:!..!||||||! ! ! !:!!|||||| !! !:!!! ! aGlnThrGlyValValPheAlaLeuMetCysPheLeuLeuValProHisValIleTyr 194260 : TCAAACTGGCGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTAC : 194316 73 : IlePheIleGluSerGlnGluThrLeuAspValLysLeuArgSerPheGlyProLeuT : 92 ! !!:!.!!!!:!!! ||| !||| ! ! :!!!:! !.!!!.! !!! !. ThrTyrPheAspCys---GluAspLeuThrArgTyrMetLysValIleAlaAlaGlnV 194317 : ACTTACTTCGACTGC---GAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAG : 194373 93 : hrPheTrpPheMetAlaMetIleAsnTyrSerCysLeuLeuLeuHisIleAspAspIl : 111 .!||| ! .!.:!!|||!!:|||!!.!:!!!! :!!:!!:!!:!!! ! !!:|| alPheSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnArgLysGluIl 194374 : TGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGAT : 194430 112 : eArgSerCysValGluHisMetLysAlaAspTrpArgIleValArgArgSerGluGlu : 130 ||||! !|||:!! !.!.|||:!!.!!.!.!::||| !|||..! !!..!|||!!: eArgPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCysGluGluAsp 194431 : CAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGAT : 194487 131 : ArgGlnValMetLeuLysAsnAlaArgIleGlyArgPheIleValGlyPheCysAlaV : 150 |||||||||||| !!!. !|||!:!||||||||||||.!!..! !.!.! ! !! ArgGlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuG 194488 : CGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGG : 194547 151 : alPheMetHisSerGlyValLeuThrPheAsnThrIleArgGlyLeuSerLysAspVa : 169 !.!! :!!.!!|||!.!||| !!!:!:!!! !|||! ! !|||! !..!!!: lyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluAr 194548 : GACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAG : 194604 170 : lIleTyrThrGluAsnSerSerValLeuValArgGlyLeuProTyrProPheTyrSer : 188 !||| !! !|||:!!!:!|||..!! !:!! !||||||||| ! ! !!! ! gIleValLysGluAspAsnSerThrGlnIle---ProLeuProTyrLeuSerAsnTyr 194605 : GATTGTCAAGGAGGATAACAGTACTCAGATA---CCTCTGCCATATTTGAGCAACTAT : 194658 189 : ArgIleLeuAspAlaHisTyrSerProAlaTyrGluPheValPheLeuLeuGlnCysV : 208 !.!!!!!! !.!. !!|||||| !||||||.!!..!|||:!!! !||| : ValPhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerGlnIleL 194659 : GTTTTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATAC : 194718 209 : alSerThrPheLeuPheAsnSerValThrValAlaValCysGlyLeuAlaAlaValPh : 227 !!! !!:! !:!!.!. |||..!!.! !!.!:!!! !.!!|||!.!|||..!.! euIleSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAlaThrIl 194719 : TGATTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTAT : 194775 228 : eValMetHisAlaCysGlyGlnLeuArgIle : 237 !:!!||||||..!|||||| !!!!..!:!: eIleMetHisCysCysGlyLeuPheGluVal 194776 : TATTATGCATTGCTGTGGCTTGTTCGAAGTG : 194807 vulgar: CbirOr28 14 237 . KQ414889.1 194150 194807 + 191 M 27 81 G 2 0 M 34 102 G 1 0 M 101 303 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194151 194807 191 + . gene_id 22 ; sequence CbirOr28 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194151 194807 . + . KQ414889.1 exonerate:protein2genome:local exon 194151 194807 . + . insertions 0 ; deletions 4 KQ414889.1 exonerate:protein2genome:local similarity 194151 194807 191 + . alignment_id 22 ; Query CbirOr28 ; Align 194151 15 81 ; Align 194232 44 102 ; Align 194334 79 303 ; Align 194637 181 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 188 Query range: 296 -> 394 Target range: 305076 -> 305783 297 : LeuLeuGlyTyrTyrCysIleMetAspTrpValHisAspAsnLysGlnAsnIleValS : 316 !!!||| ||| ..!||||||! ! !..!|||! !:!:!!..!! PheLeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrT 305077 : TTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAA : 305134 317 : erTyrCysMetLeuLeuThrSerIleThrPheAsnIlePheIlePheCysTyrIleGl : 335 !!||| :!!||||||! !|||:!!||||||||||||||||||!!.||||||||||| hrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGl 305135 : CATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGG : 305191 336 : yGluIleLeuSerGluGlnGly{Gl} >>>> Target Intron 1 >>>> {y} : 343 ||||||||||! !|||:!!! !{.!} 413 bp {!} yGluIleLeuMetGluLysVal{Se}-+ ++{r} 305192 : TGAGATTCTTATGGAAAAGGTG{ag}tt.........................ag{T} : 305630 344 : GlnIleGlyArgSerAlaTyrMetThrAsnTrpTyrLeuLeuProGlyAsnThrAlaL : 363 ...:!!||| !|||..!!:!|||! !!:!||||||! !|||||| !!!.||| !! SerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleH 305631 : AGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATAC : 305688 364 : euGlyLeuThrMetIleIleLeuArgSerAsnValAlaLeuLysIleThrAlaGlyLy : 382 !||||||! !:!:|||||| !! !|||!:! ! !! !||||||!:!|||||||| isGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLy 305689 : ATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAA : 305745 383 : sPheValGlnLeuSerPheValThrPheGlyGlyVal : 394 | ! |||.!.||||||!!. !|||||||||..!||| sValValAspLeuSerLeuSerThrPheGlyAsnVal 305746 : AGTAGTTGATTTATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: CbirOr28 296 394 . KQ414889.1 305076 305783 + 188 M 46 138 S 0 2 5 0 2 I 0 409 3 0 2 S 1 1 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305077 305783 188 + . gene_id 23 ; sequence CbirOr28 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305077 305216 . + . KQ414889.1 exonerate:protein2genome:local exon 305077 305216 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305217 305218 . + . intron_id 1 ; splice_site "tt" KQ414889.1 exonerate:protein2genome:local intron 305217 305629 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305628 305629 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305630 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305630 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305077 305783 188 + . alignment_id 23 ; Query CbirOr28 ; Align 305077 297 138 ; Align 305631 344 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 180 -> 248 Target range: 202685 -> 202889 181 : GlyLeuProTyrProPheTyrSerArgIleLeuAspAlaHisTyrSerProAlaTyrG : 200 .!!:!! !!!:! !!|||! .!! !|||:!!|||!.!...|||||||||!.! !!| SerValThrPheSerPheSerGlyPheIleIleAspValArgTyrSerProValAsnG 202686 : AGTGTGACGTTCTCCTTCTCAGGATTTATCATTGATGTTAGATACAGTCCTGTGAACG : 202743 201 : luPheValPheLeuLeuGlnCysValSerThrPheLeuPheAsnSerValThrValAl : 219 ||.!! !!|||! !:!!!:! !|||:!!..!.!!|||.!!:!!.!!|||||||||!. luIlePhePheSerIleArgIleValAlaValIleLeuIleHisGlyValThrValGl 202744 : AGATCTTCTTCTCGATTCGAATCGTAGCTGTCATCCTAATTCACGGTGTCACTGTAGG : 202800 220 : aValCysGlyLeuAlaAlaValPheValMetHisAlaCysGlyGlnLeuArgIleLeu : 238 !!.!||| !!|||.!!|||:!!|||!.!:!:|||! !|||||||||:!! !:!!||| yAlaCysCysLeuThrAlaLeuPheAlaValHisAspCysGlyGlnMetAspValLeu 202801 : AGCTTGTTGCTTGACAGCGTTGTTTGCGGTTCACGATTGCGGCCAGATGGACGTTTTG : 202857 239 : MetSerTrpLeuAspAsnLeuIleAspGly : 248 |||:!!||||||!!::!!|||!!:|||||| MetAlaTrpLeuGluHisLeuMetAspGly 202858 : ATGGCCTGGCTGGAACATTTGATGGATGGT : 202889 vulgar: CbirOr28 180 248 . KQ414889.1 202685 202889 + 160 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202686 202889 160 + . gene_id 24 ; sequence CbirOr28 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202686 202889 . + . KQ414889.1 exonerate:protein2genome:local exon 202686 202889 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202686 202889 160 + . alignment_id 24 ; Query CbirOr28 ; Align 202686 181 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 343 -> 400 Target range: 238634 -> 238805 344 : GlnIleGlyArgSerAlaTyrMetThrAsnTrpTyrLeuLeuProGlyAsnThrAlaL : 363 :!!:!!|||..! !!.!|||||||||:!!||||||! !|||||| !!..! ! !| LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 238635 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 238692 364 : euGlyLeuThrMetIleIleLeuArgSerAsnValAlaLeuLysIleThrAlaGlyLy : 382 ||! !|||! !:!!|||||| !||||||||||||!.!:!!|||:!!||||||||||| euAspLeuIleLeuIleIleLysArgSerAsnValValValLysValThrAlaGlyLy 238693 : TCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCACCGCTGGAAA : 238749 383 : sPheValGlnLeuSerPheValThrPheGlyGlyValIleLysSerAlaLeuAla : 400 | ! :!!!!.:!!|||.!! !|||||||||! !|||! !:!!!!! !|||||| sValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeuAla 238750 : AGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTTGCT : 238805 vulgar: CbirOr28 343 400 . KQ414889.1 238634 238805 + 143 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238635 238805 143 + . gene_id 25 ; sequence CbirOr28 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238635 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238635 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238635 238805 143 + . alignment_id 25 ; Query CbirOr28 ; Align 238635 344 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 343 -> 399 Target range: 254280 -> 254448 344 : GlnIleGlyArgSerAlaTyrMetThrAsnTrpTyrLeuLeuProGlyAsnThrAlaL : 363 :!!:!!|||..! !!.!|||||||||:!!||||||! !|||||| !!..! ! !| LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 254281 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 254338 364 : euGlyLeuThrMetIleIleLeuArgSerAsnValAlaLeuLysIleThrAlaGlyLy : 382 ||! !|||! !:!!|||||| !||||||||||||!.!:!!:!!|||||||||||||| euAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLy 254339 : TCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaa : 254395 383 : sPheValGlnLeuSerPheValThrPheGlyGlyValIleLysSerAlaLeu : 399 |... ...:::|||.!! !|||||||||! !|||! !:!!!!! !||| sIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeu 254396 : aatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTT : 254448 vulgar: CbirOr28 343 399 . KQ414889.1 254280 254448 + 136 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254281 254448 136 + . gene_id 26 ; sequence CbirOr28 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254281 254448 . + . KQ414889.1 exonerate:protein2genome:local exon 254281 254448 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254281 254448 136 + . alignment_id 26 ; Query CbirOr28 ; Align 254281 344 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 343 -> 399 Target range: 244664 -> 244832 344 : GlnIleGlyArgSerAlaTyrMetThrAsnTrpTyrLeuLeuProGlyAsnThrAlaL : 363 :!!:!!|||..! !!.!|||||||||:!!||||||! !|||||| !!..! ! !| LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 244665 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 244722 364 : euGlyLeuThrMetIleIleLeuArgSerAsnValAlaLeuLysIleThrAlaGlyLy : 382 ||! !|||! !:!!|||||| !|||||||||:!!!.!:!!:!!|||||||||||||| euAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleThrAlaGlyLy 244723 : TCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCACCGCTGGAAA : 244779 383 : sPheValGlnLeuSerPheValThrPheGlyGlyValIleLysSerAlaLeu : 399 | ! :!!!!.:!!|||.!! !|||||||||! !|||! !:!!!!! !||| sValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrLysLeu 244780 : AGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAACTT : 244832 vulgar: CbirOr28 343 399 . KQ414889.1 244664 244832 + 134 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244665 244832 134 + . gene_id 27 ; sequence CbirOr28 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244665 244832 . + . KQ414889.1 exonerate:protein2genome:local exon 244665 244832 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244665 244832 134 + . alignment_id 27 ; Query CbirOr28 ; Align 244665 344 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 340 -> 394 Target range: 264723 -> 264885 341 : GlnGlyGlyGlnIleGlyArgSerAlaTyrMetThrAsnTrpTyrLeuLeuProGlyA : 360 ||| !! !:!!:!!|||..! !!.!||||||:!!|||||||||! !|||||| !! GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 361 : snThrAlaLeuGlyLeuThrMetIleIleLeuArgSerAsnValAlaLeuLysIleTh : 379 !. ! !|||! !|||! !:!:|||||||||||||||!:!|||!.!!!!|||.!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 380 : rAlaGlyLysPheValGlnLeuSerPheValThrPheGlyGlyVal : 394 ||||||||||.!.:!!!!.:!!|||.!. !||||||.!!! !||| rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: CbirOr28 340 394 . KQ414889.1 264723 264885 + 129 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264885 129 + . gene_id 28 ; sequence CbirOr28 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264885 129 + . alignment_id 28 ; Query CbirOr28 ; Align 264724 341 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 340 -> 403 Target range: 292389 -> 292578 341 : GlnGlyGlyGlnIleGlyArgSerAlaTyrMetThrAsnTrpTyrLeuLeuProGlyA : 360 ||||||.!!:!!|||!.!!.!:!!:!!||| |||.!.|||||| !|||||| !!. GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 361 : snThrAlaLeuGlyLeuThrMetIleIleLeuArgSerAsnValAlaLeuLysIleTh : 379 ..! !|||! !! !:!!..!:!!:!::!! !! !!!!!!. ! !!:!!|||:!!|| rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 380 : rAlaGlyLysPheValGlnLeuSerPheValThrPheGlyGlyValIleLysSerAla : 398 ||||||||||.!. !! ||||||!!. !|||||||||!.!||| !:!!||| ! rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSerLys 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCAAAA : 292561 399 : LeuAlaTyrLeuAsn : 403 |||!.!! :!!:!! LeuValLeuIleHis 292562 : CTAGTCTTGATACAC : 292578 vulgar: CbirOr28 340 403 . KQ414889.1 292389 292578 + 113 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 292578 113 + . gene_id 29 ; sequence CbirOr28 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292390 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 292578 113 + . alignment_id 29 ; Query CbirOr28 ; Align 292390 341 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 343 -> 394 Target range: 219518 -> 219671 344 : GlnIleGlyArgSerAlaTyrMetThrAsnTrpTyrLeuLeuProGlyAsnThrAlaL : 363 :::||||||... :!!||||||! !.!.||||||! !||| !!|||!!.! ! !| LysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysLysL 219519 : aaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAAAGC : 219576 364 : euGlyLeuThrMetIleIleLeuArgSerAsnValAlaLeuLysIleThrAlaGlyLy : 382 || !! !..!:!!! !||| !! !|||||| !:!!:!!|||:!:|||||||||!! euTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAs 219577 : TCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGGAAA : 219633 383 : sPheValGlnLeuSerPheValThrPheGlyGlyVal : 394 ..!.|||:!!||||||.!! !|||||| !! !||| nMetValGluLeuSerIleSerThrPheThrAspVal 219634 : TATGGTCGAATTGTCTATCAGCACTTTTACCGACGTG : 219671 vulgar: CbirOr28 343 394 . KQ414889.1 219518 219671 + 105 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219519 219671 105 + . gene_id 30 ; sequence CbirOr28 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219519 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219519 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219519 219671 105 + . alignment_id 30 ; Query CbirOr28 ; Align 219519 344 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 304 -> 341 Target range: 291368 -> 291479 305 : AspTrpValHisAspAsnLysGlnAsnIleValSerTyrCysMetLeuLeuThrSerI : 324 !!:|||! ! !..!:!!..! ...|||:!!!!!||| !! ||||||||||||. GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 325 : leThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln : 341 !!||||||||||||.!.||||||||||||:!!||||||:!!||| !! !||| heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAG : 291479 vulgar: CbirOr28 304 341 . KQ414889.1 291368 291479 + 104 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 291479 104 + . gene_id 31 ; sequence CbirOr28 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 291479 104 + . alignment_id 31 ; Query CbirOr28 ; Align 291369 305 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 304 -> 340 Target range: 228247 -> 228355 305 : AspTrpValHisAspAsnLysGlnAsnIleValSerTyrCysMetLeuLeuThrSerI : 324 !!:||| !! ! .!. ! ! ! !|||!!!|||! !|||||| !|||. GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerP 228248 : GAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCT : 228305 325 : leThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGlu : 340 !!|||||||||||||||||||||||||||||||||||||||:!!:!!||| heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGlu 228306 : TTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAA : 228355 vulgar: CbirOr28 304 340 . KQ414889.1 228247 228355 + 100 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228248 228355 100 + . gene_id 32 ; sequence CbirOr28 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 228248 228355 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228355 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228248 228355 100 + . alignment_id 32 ; Query CbirOr28 ; Align 228248 305 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 168 -> 298 Target range: 1681728 -> 1682241 169 : LeuGlyAspAsnAlaSerMetHisSerLeuProPheAlaPheTyrAspLysIleLe : 187 :!!||| ! !:!! !..! !...! !||||||||| !!||| ! ! !|| IleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAsnLe 1681729 : ATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAACTT : 1681783 188 : uAspThrThrThrSerProThrTyrGluIleValPheIleMetGln >>>> Tar : 203 | !|||:!! !!!!||| |||||||||:::|||:!:!!::!! uProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681784 : GCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt........ : 1681833 204 : get Intron 1 >>>> PheLeuSerThrPheValValAsnSerValAlaValS : 215 120 bp ||||||..! ! ! !...! ! ! ! !! ++ThrLeuSerValValHisSerGlyIleCysPheCysC 1681834 : .................agACATTATCTGTGGTGCATTCGGGAATTTGTTTCTGTT : 1681987 216 : erThrValSerLeuIleAlaValPheValMetHisAlaCysGlyGlnIleLysIle : 233 !! !! !!:!!!!:!:..!:!!.!. !||||||!.! !!||||||.!!|||||| ysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLysIle 1681988 : GTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAGATT : 1682041 234 : LeuIleSerLeuLeuGluAsnPheValAspGluThrSerGluLysTrpGluAsnSe : 252 ||| !!:! !|||:!!!.. ! :!!..!|||! |||...||| :::::::: LeuGlnAsnLysLeuGlnThrValLeuSerGluLysSerSerLysGluLysSerAl 1682042 : TTACAAAACAAACTCCAAACAGTATTGAGTGAGAAatcttcgaaagaaaaatcagc : 1682098 253 : rThrGlnGlyLys<->TyrAlaValIleValGluHisHisLeuArgValLeuSerP : 270 : !! ! !||| !:! !! ! !|||:!!:!!|||! ! !:!!||||||: aGlyLeuTyrLysGluPheLysGluCysValGlnTyrHisHisLeuLeuLeuSerT 1682099 : tGGACTGTATAAAGAGTTCAAGGAGTGCGTACAGTATCATCATTTGCTTCTTTCGt : 1682155 271 : heValSerTyrIleAspLysIleThrAsnIleIleCysLeuValGluValMetGly : 288 ::|||... :::::: :!! ! !:!! ! :!!:!!:!!:!!:!!! ! yrValGluLysLeuGluTyrValPheCysValProLeuMetIleGlnLeuLeuVal 1682156 : acgtggaaaaattggaatacgTATTTTGTGTCCCGTTGATGATTCAATTGCTGGTG : 1682209 289 : CysThrLeuHisMetCysLeuLeuGlyTyr : 298 ! !!:!:!! !:!!|||:!!! !|||!:! SerSerIleValLeuCysValSerGlyPhe 1682210 : TCTAGCATAGTTCTGTGCGTCTCGGGGTTT : 1682241 vulgar: CbirOr26 168 298 . KQ414915.1 1681728 1682241 + 121 M 34 102 5 0 2 I 0 116 3 0 2 M 54 162 G 0 3 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681729 1682241 121 + . gene_id 1 ; sequence CbirOr26 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681729 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681729 1681830 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682241 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682241 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681729 1682241 121 + . alignment_id 1 ; Query CbirOr26 ; Align 1681729 169 102 ; Align 1681951 203 162 ; Align 1682116 257 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 318 -> 409 Target range: 807317 -> 807590 319 : MetLeuLeuThrSerIleThrPheAsnIlePheIlePheCysTyrIleGlyGluIleL : 338 :!:|||:!!..!!!!:!: !.!!.!.:!:!:!:!!!:!..!||| |||.!.! !| ValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrL 807318 : GTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACAC : 807375 339 : euSerGluGlnGlyGlyGlnIleGlyArgSerAlaTyrMetThrAsnTrpTyrLeuLe : 357 ||..!..!!:! !! !:!!|||!.!!:!:!!|||||| :!! !||||||! !! euGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCy 807376 : TCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTG : 807432 358 : uProGlyAsnThrAlaLeuGlyLeuThrMetIleIleLeuArgSerAsnValAlaLeu : 376 !! !|||:!!.!!||| !! !||| !:!!||||||! !|||.!!||| ! !!! ! sHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyr 807433 : CCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTAT : 807489 377 : LysIleThrAlaGlyLysPheValGlnLeuSerPheValThrPheGlyGlyValIleL : 396 :::|||||||||||||||||||||! !:!!!:!.!! !!|||||| !! !:!!:!:| ArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuL 807490 : CGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGA : 807549 397 : ysSerAlaLeuAlaTyrLeuAsnLeuPheArgThrPheIle : 409 ||:!!:!! !:!!||||||::!:!!.!.!:!..!.!.!!: ysAlaSerGlySerTyrLeuSerValMetLysValMetMet 807550 : AAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATG : 807590 vulgar: CbirOr28 318 409 . KQ414940.1 807317 807590 + 152 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807318 807590 152 + . gene_id 1 ; sequence CbirOr28 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807318 807590 . + . KQ414940.1 exonerate:protein2genome:local exon 807318 807590 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807318 807590 152 + . alignment_id 1 ; Query CbirOr28 ; Align 807318 319 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 296 -> 407 Target range: 807257 -> 807590 297 : GlyTyrTyrCysIleMetAspTrpThrGlnGlyAspLysGluSerIleValSerTyrV : 316 |||!:! !! !:!::!:! ! !!:! ! !|||!!.! :!! !:!!!!! ! GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 317 : alIleIleLeuIleSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluIl : 335 !!:!!:!::!!:!:!!!:!! !.!!.!.:!:!:!:!!!:!..!||| |||.!.! heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 336 : eLeuSerGluGlnCysGlyGlnIleGlyAspThrAlaTyrMetThrAsnTrpTyrLeu : 354 !|||..!..!!:! !! !:!!|||!.!.!..!!|||||| :!! !||||||! ! rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 355 : LeuArgArgAsnAsnAlaValGlyPheValLeuIleIleLeuLysSerAsnValValV : 374 ! !!.! !!:!! ||| !! !.!!:!!|||||||||! !::!.!!||| ! ! CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 375 : alLysIleThrAlaGlyLysMetIleGluLeuSerLeuSerThrPheGlyAspValIl : 393 !:::|||||||||||||||.!.:!! !:!!!:!|||! !|||||| !!!::!!:! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 394 : eLysSerAlaValAlaTyrLeuAsnIlePheArgThrLeuVal : 407 :|||:!!:!!! !:!!||||||::!:!!.!.!:!..!:!!:!! uLysAlaSerGlySerTyrLeuSerValMetLysValMetMet 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATG : 807590 vulgar: CbirOr26 296 407 . KQ414940.1 807257 807590 + 149 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807590 149 + . gene_id 1 ; sequence CbirOr26 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807590 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807590 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807590 149 + . alignment_id 1 ; Query CbirOr26 ; Align 807258 297 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr37 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 1024 Query range: 7 -> 397 Target range: 805820 -> 807593 8 : SerAspGluIleTyrArgThrLeuSerValTyrGluLysValLeuSerValIleGlyI : 27 .!!!!::!!||| !||| !!!! !||| ! |||! !||||||!!!:!!||||||| GlyGluLysIleAlaArgGluPheLeuValGlnGluThrValLeuArgIleIleGlyI 805821 : GGCGAGAAGATCGCTCGCGAGTTCCTCGTGCAGGAAACGGTGTTGAGAATAATCGGGA : 805878 28 : leTrpProLeuAsnAlaGlyAspValLysSerIleValArgCysLeuLeuAlaIleLe : 46 |||||||| !!:!!.!..!:!! !! !||||||! !|||!! !!!!|||||||| leTrpProSerSerValAsnAsnPheAlaSerIleGlyArgTrpThrPheAlaIleLe 805879 : TTTGGCCGAGCAGCGTTAACAATTTCGCGTCCATCGGTCGATGGACGTTCGCCATCTT : 805935 47 : uIleGln >>>> Target Intron 1 >>>> IleSerThrIleSerSerLeuS : 56 |! !!. 72 bp ||||||||||||! !||||||| uThrHis++ ++IleSerThrIleTyrSerLeuS 805936 : GACGCATgt.........................agATCAGTACTATCTACAGCCTGT : 806037 57 : erLeuGluAlaTyrArgGlnCysLeuGlyThrGluAspMetMetGluAlaPheLeuMe : 75 ||||||||!.!||||||!!.||||||! ! !!!:|||! !|||!!:||||||:!!|| erLeuGluValTyrArgHisCysLeuAspLeuAspAspThrMetAspAlaPheValMe 806038 : CTCTCGAAGTCTATCGTCATTGTCTGGACCTCGACGACACGATGGACGCGTTCGTCAT : 806094 76 : tAspLeuSerSerValValSerLeuSerLysLeuLeuValValArgLeuThrTrpArg : 94 ||||||||||||||||:!!|||||||||||||||||||||:!!|||:!!! !! !!:! tAspLeuSerSerValIleSerLeuSerLysLeuLeuValLeuArgMetLysSerLys 806095 : GGATCTGTCGTCGGTGATCAGTCTGTCCAAGCTGCTCGTTTTACGGATGAAATCGAAA : 806151 95 : HisThrTyrPheLeuValThrSerLeuValAspAspTrpSerIleSerArgAsnThrA : 114 ||||||||| !|||||| !|||:!!||| ! ||||||!!!! ! ! !:!!:!!| HisThrTyrAlaLeuValAspSerIleValLysAspTrpThrAsnValAspHisSerA 806152 : CACACTTACGCTCTCGTCGATTCGATCGTCAAAGACTGGACGAACGTCGATCATTCCC : 806211 115 : rgGlnArgGluValMetMetLysTyrThrAsnValGlyArgIleValSerLeuThrMe : 133 ||!!...!...:!!|||! !:!!||| !||| !|||||||||||||||||||||!! rgHisGluArgIleMetThrGluTyrPheAsnLysGlyArgIleValSerLeuThrIl 806212 : GCCACGAACGCATCATGACGGAGTACTTCAACAAAGGAAGAATCGTTTCGTTGACGAT : 806268 134 : tLeuTyrLeuGlyTyrAlaSerGlyValSerPheLeuPheMetAlaValProPheAsp : 152 :||||||||||||||||||||||||:!!||||||:!!.!!! |||:!!|||!!. !! eLeuTyrLeuGlyTyrAlaSerGlyLeuSerPheValLeuLysAlaLeuProLeuHis 806269 : ACTCTACCTTGGATACGCCTCTGGACTGTCTTTCGTTCTCAAAGCCCTGCCTTTGCAC : 806325 153 : >>>> Target Intron 2 >>>> LysLeuIleProTrpLeuAsnAlaSerAl : 162 97 bp |||||| ! !||| !||| |||.! -+ ++LysLeuHisSerTrpAlaAsn---SerTh 806326 : ct.........................agAAGCTCCACAGTTGGGCGAAT---TCAAC : 806449 163 : aProAsnGluAsnSerThrValIleProThrTyrPheLeuAlaThrTyrCysValPhe : 181 ! !||| !|||..!|||!.! ...|||||||||||||||:!!||||||||| rValAsnThrAsnAspThrAlaArgLeuAsnTyrPheLeuAlaThrHisCysValPhe 806450 : GGTGAACACGAACGATACAGCGagattgaattatttcttgGCCACGCACTGCGTGTTC : 806506 182 : GlySerLeuProThrIleAlaHisSerCysValLeuLeuLeuGlnValAlaGlnIleP : 201 ||| !!|||||| ! !||| !||||||||||||||||||! ! !!!.|||| GlyProLeuProLeuGlnHisHisValCysValLeuLeuLeuGlnGlyMetHisIleP 806507 : GGCCCTTTACCGTTGCAGCATCACGTCTGCGTGTTACTGCTGCAAGGGATGCACATTT : 806566 202 : heValAsnAlaThrSerHisCysGlyAsnAspGlyPhePhePheGlyLeuAlaMetHi : 220 || !!||||||..!:!!||||||||||||||||||.!!||||||.!!|||.!!||||| hePheAsnAlaValAlaHisCysGlyAsnAspGlyLeuPhePheSerLeuThrMetHi 806567 : TCTTCAACGCCGTGGCTCACTGCGGCAACGACGGCCTCTTCTTCAGCCTGACGATGCA : 806623 221 : sLeuCysGlyGlnPheGluValLeuGlnMetAspPheAlaAspIleGluValGluLys : 239 |||||||||||||||||||:!!|||:!!|||:!!.!.|||!!:|||||| !!||| ! sLeuCysGlyGlnPheGluIleLeuLysMetAsnLeuAlaGluIleGluPheGluAla 806624 : TCTGTGCGGTCAGTTTGAAATTCTGAAGATGAATCTGGCGGAGATCGAGTTCGAGGCG : 806680 240 : GlnAlaCysLysArgLysLeuArgMetLeuIleGlyArgHisCysHisLeuIleLysL : 259 ||||||::!!:!::!:!! !!:!:|||:!: !||||||||| ! ||| !| IleAlaCysArgLysArgIleGlyValLeuValLysArgHisCysLysLeuAlaValL 806681 : ATCGCTTGTCGGAAGCGAATCGGCGTTCTCGTGAAACGACACTGCAAACTGGCGGTGT : 806740 260 : euAlaAspSerLeuGluTyrAlaPheAsnMetAlaIlePheAlaGlnLeuLeuMetSe : 278 ||.!!:!!..!|||||| ! ::!|||!:!||| !|||.!.!.!||||||:!!||||| euThrAsnAspLeuGluGlnSerPheSerMetIleIleLeuValGlnLeuMetMetSe 806741 : TGACCAACGATCTCGAGCAGAGCTTCAGTATGATTATTCTGGTGCAACTCATGATGAG : 806797 279 : rValLeuLeuLeuCysValGlu{G} >>>> Target Intron 3 >>>> {ly} : 286 |!.!||||||:!!|||||||||{|} 437 bp {||} rAlaLeuLeuIleCysValGlu{G}++ ++{ly} 806798 : TGCGTTGCTAATTTGCGTAGAA{G}gt.........................ag{GT} : 807259 287 : MetGlnLeuIleIleSerLeuLysLeuAsnAspAsnIleAlaAlaLeuLysHisValV : 306 .!. !!!:!::!!:!!|||!.. !!!.||||||:!!|||||||||!:! ! !!| PheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheV 807260 : TTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCG : 807318 307 : alLeuIleLeuThrMetLeuValGlnLeuTyrLeuTyrCysTyrAlaGlyAspArgLe : 325 |||||!!::!!|||:!!|||:!!|||||||||||||||..!|||||||||:!!! !|| alLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLe 807319 : TTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACT : 807375 326 : uGluSerIleThrGlyThrLeuAlaHisGlyValTyrGluThrProTrpTyrAspPhe : 344 ||||||| !|||! ! !:!!|||!!.!.!!.!|||!!::!!! !|||||| !! ! uGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCys 807376 : CGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGC : 807432 345 : AspThrLysIleMetLysAsnLeuProMetValMetPheArgGlyLysValProHisG : 364 !! ! ! ! !:!:!!|||! !:!!:!!!!: !||||||!!. !|||:!!! HisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrA 807433 : CACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATC : 807492 365 : lnIleThrAlaGlyLysPheIleProMetAsnLeuPheSerTyrLysGluIleLeuLy : 383 ::||||||||||||||||||:!!|||||||||||||||!!!!:!|||||||||||||| rgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLy 807493 : GTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAA : 807549 384 : sAlaThrGlySerTyrLeuSerValLeuArgValMetIleAsp : 397 ||||:!!||||||||||||||||||:!!!:!||||||!!:||| sAlaSerGlySerTyrLeuSerValMetLysValMetMetAsp 807550 : AGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: CbirOr37 7 397 . KQ414940.1 805820 807593 + 1024 M 41 123 5 0 2 I 0 68 3 0 2 M 104 312 5 0 2 I 0 93 3 0 2 M 7 21 G 1 0 M 125 375 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 805821 807593 1024 + . gene_id 1 ; sequence CbirOr37 ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 805821 805943 . + . KQ414940.1 exonerate:protein2genome:local exon 805821 805943 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 805944 805945 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 805944 806015 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 806014 806015 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 806016 806327 . + . KQ414940.1 exonerate:protein2genome:local exon 806016 806327 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 806328 806329 . + . intron_id 2 ; splice_site "CT" KQ414940.1 exonerate:protein2genome:local intron 806328 806424 . + . intron_id 2 KQ414940.1 exonerate:protein2genome:local splice3 806423 806424 . + . intron_id 1 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 806425 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806425 806821 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 3 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807258 . + . intron_id 3 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 2 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 805821 807593 1024 + . alignment_id 1 ; Query CbirOr37 ; Align 805821 8 123 ; Align 806016 49 312 ; Align 806425 153 21 ; Align 806446 161 375 ; Align 807261 287 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 302 -> 413 Target range: 807260 -> 807593 303 : TyrTyrCysIleMetGluTrpGluAsnSerAspAlaValAlaIleLeuThrTyrPheI : 322 !:! !! !:!::!:! !...!..!.!||| !|||||| !|||! ! !|||: PheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheV 807261 : TTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCG : 807318 323 : leLeuLeuIleSerPheMetPheAsnIleLeuIlePheCysTyrIleGlyGluLeuLe : 341 !!|||:!!:!:!!!!!.:!!.!!.!.:!:! !:!!!:!..!||| |||.!. !|| alLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLe 807319 : TTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACT : 807375 342 : uMetGlnGlnTyrSerThrValAlaSerAlaValTyrGlyIleAsnTrpTyrAspLeu : 360 | !..!!:! !..! !:!!|||..!|||!.!|||! ! ! !|||||| !! ! uGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCys 807376 : CGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGC : 807432 361 : SerGlyLysLysAlaLeuAspLeuLysLeuIleIleAlaMetSerArgTyrProValL : 380 !||| ! !||| !|||||| ||||||||| ! .!!!.!! ||| !: HisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrA 807433 : CACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATC : 807492 381 : ysLeuThrAlaGlyLysPheValAspLeuSerLeuAsnThrPheGlyAlaValLeuAr : 399 :::!!|||||||||||||||||| :!!!:!||| !|||||| !! !:!!|||!: rgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLy 807493 : GTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAA : 807549 400 : gThrSerValValTyrLeuAsnLeuLeuArgThrValThrGlu : 413 !.!!|||! ! !||||||::!:!!:!!!:!..!:!!! !!!: sAlaSerGlySerTyrLeuSerValMetLysValMetMetAsp 807550 : AGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: CbirOr30 302 413 . KQ414940.1 807260 807593 + 175 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807261 807593 175 + . gene_id 1 ; sequence CbirOr30 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807261 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807261 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807261 807593 175 + . alignment_id 1 ; Query CbirOr30 ; Align 807261 303 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 226 -> 409 Target range: 806613 -> 807587 227 : PheValMetHisValCysGlyGlnValGlnIleLeuMetThrMetLeuGlyAspLeuV : 246 .!...!||||||:!!||||||||| !!:!!||||||! !! !! |||!.!!!::!! LeuThrMetHisLeuCysGlyGlnPheGluIleLeuLysMetAsnLeuAlaGluIle- 806614 : CTGACGATGCATCTGTGCGGTCAGTTTGAAATTCTGAAGATGAATCTGGCGGAGATC- : 806671 247 : alGluGlyGluArgAspLysGlyThrSerValGluGluArgLeuGlyValIleAlaAr : 265 ..! !:!!!.!! !:!! !..!:!!|||:!!||||||:!!!.!!: -----------GluPheGluAlaIleAlaCysArgLysArgIleGlyValLeuValLy 806672 : -----------GAGTTCGAGGCGATCGCTTGTCGGAAGCGAATCGGCGTTCTCGTGAA : 806716 266 : gTyrHisValArgValLeuArgPheAlaValAspValGluGluValLeuArgGluMet : 284 ! ||| !!:!:!! ! !!!..!! !|||:!!|||:!! !!!!!!! !!!: sArgHisCysLysLeuAlaValLeuThrAsnAspLeuGluGlnSerPheSerMetIle 806717 : ACGACACTGCAAACTGGCGGTGTTGACCAACGATCTCGAGCAGAGCTTCAGTATGATT : 806773 285 : CysLeuMetGluLeuValAlaAlaThrPheIleIleCysLeuLeu{G} >>>> Tar : 300 !|||:!!:!!|||:!! !::!.!!!!.:!!||||||:!! !{!} IleLeuValGlnLeuMetMetSerAlaLeuLeuIleCysValGlu{G}++ 806774 : ATTCTGGTGCAACTCATGATGAGTGCGTTGCTAATTTGCGTAGAA{G}gt........ : 806824 301 : get Intron 1 >>>> {lu}TyrTyrIleMetThrGluTrpGluAsnSerAspVa : 312 437 bp { }!:! !.!!:!!..!! !...!..!.!||| ++{ly}PheValPheLeuValAlaLeuSerThrLysAspAs 806825 : .................ag{GT}TTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAA : 807294 313 : lLeuGlyIleAlaThrTyrPheIleLeuPheIleSerLeuSerPheAsnPheLeuIle : 331 !:!!!.! ! !! ! !|||:!!|||.!.:!:!!!||| !.!!.!..!.! !:!! nValAlaAlaLeuArgSerPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeu 807295 : CGTTGCAGCATTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTT : 807351 332 : PheCysTyrIleGlyGluLeuLeuValGluGluTyrSerLysIleAlaSerAlaValT : 351 !:!..!||| |||.!. !|||! !..!..! !..!:!!||||||..!|||!.!| TyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaT 807352 : TACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCT : 807411 352 : yrGlyIleAsnTrpTyrAspLeuProGlyHisLysAlaLeuHisLeuValMetIleIl : 370 ||! ! ! !|||||| !! !! !|||||| !||| ! !!|||:!!:!!||||| yrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIl 807412 : ATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCAT : 807468 371 : eThrMetSerGlnTyrProProLysLeuThrAlaGlyLysPheValAspPheSerLeu : 389 | ! .!!.!.! ||| !::::!!|||||||||||||||||| .!.!:!||| eHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheValProMetAsnLeu 807469 : CCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTT : 807525 390 : SerThrPheSerThrValLeuArgThrSerIleValTyrPheAsnLeuLeuArgThrV : 409 ! !||||||!.! !:!!|||!:!.!!||| ! !|||.!.::!:!!:!!!:!..!: PheThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSerValMetLysValM 807526 : TTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAA : 807585 410 : al : 409 !! et 807586 : TG : 807587 vulgar: CbirOr29 226 409 . KQ414940.1 806613 807587 + 204 M 19 57 G 4 0 M 50 150 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 109 327 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806614 807587 204 + . gene_id 1 ; sequence CbirOr29 ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 806614 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806614 806821 . + . insertions 0 ; deletions 4 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807258 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 806614 807587 204 + . alignment_id 1 ; Query CbirOr29 ; Align 806614 227 57 ; Align 806671 250 150 ; Align 807261 301 327 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr40 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 187 -> 290 Target range: 806523 -> 806823 188 : SerGlnTyrValMetIleLeuIleValGlnSerIleGlnThrPheLeuIleCysAlaT : 207 ..!!!.:!!||| :!:|||:!::!!|||.!!!!:!!.! !|||!!!! !..!!.!. GlnHisHisValCysValLeuLeuLeuGlnGlyMetHisIlePhePheAsnAlaValA 806524 : CAGCATCACGTCTGCGTGTTACTGCTGCAAGGGATGCACATTTTCTTCAACGCCGTGG : 806581 208 : hrGlnCysLeuValAspSerPhePhePheAsnValAlaThrHisLeuAlaGlyGlnLe : 226 !!!!.||| ! !|||.!!.!!||||||!:!:!!.!!! !||||||..!||||||!! laHisCysGlyAsnAspGlyLeuPhePheSerLeuThrMetHisLeuCysGlyGlnPh 806582 : CTCACTGCGGCAACGACGGCCTCTTCTTCAGCCTGACGATGCATCTGTGCGGTCAGTT : 806638 227 : uGluIleLeuLysHisLysPheLysIlePheAlaAsnLysArgAspThrGluThrAsn : 245 !|||||||||||| !!. .!.|||.!.! ..! ! !! !! ! ! eGluIleLeuLysMetAsn---------LeuAlaGluIleGluPheGluAlaIleAla 806639 : TGAAATTCTGAAGATGAAT---------CTGGCGGAGATCGAGTTCGAGGCGATCGCT : 806686 246 : TyrArgLysLysPheValAspLeuIleAsnArgHisAsnGluLeuMetGluPheAsnG : 265 ! !||||||::!.!!! !! !|||:!:!!.|||||| !:!!||| !! !!!.!.!. CysArgLysArgIleGlyValLeuValLysArgHisCysLysLeuAlaValLeuThrA 806687 : TGTCGGAAGCGAATCGGCGTTCTCGTGAAACGACACTGCAAACTGGCGGTGTTGACCA : 806746 266 : lnAsnLeuGluAspThrPheHisPheLeuIleLeuCysGlnLeuValMetValThrIl : 284 !.:!!||||||.!.!:!||| !.!.:!!|||||| ||||||:!!||| !.!!:! snAspLeuGluGlnSerPheSerMetIleIleLeuValGlnLeuMetMetSerAlaLe 806747 : ACGATCTCGAGCAGAGCTTCAGTATGATTATTCTGGTGCAACTCATGATGAGTGCGTT : 806803 285 : eMetIleAlaLeuLeuGly : 290 ::!:|||..!:!! !||| uLeuIleCysValGluGly 806804 : GCTAATTTGCGTAGAAGGT : 806823 vulgar: CbirOr40 187 290 . KQ414940.1 806523 806823 + 115 M 45 135 G 3 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806524 806823 115 + . gene_id 1 ; sequence CbirOr40 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 806524 806823 . + . KQ414940.1 exonerate:protein2genome:local exon 806524 806823 . + . insertions 0 ; deletions 3 KQ414940.1 exonerate:protein2genome:local similarity 806524 806823 115 + . alignment_id 1 ; Query CbirOr40 ; Align 806524 188 135 ; Align 806659 236 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 309 -> 407 Target range: 807287 -> 807581 310 : ArgLysThrIleGluThrIleThrPhePheLeuIleValThrCysPheThrPheAsnT : 329 !:! ! !.!:!!! !.!!:!:! ! !|||:!!:!::!!..! !!!. !.!!.!. LysAspAsnValAlaAlaLeuArgSerPheValLeuMetValThrLeuLeuIleGlnL 807288 : AAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGC : 807345 330 : hrPheIlePheCysTyrIleGlyAspValLeuAlaGluGluCysLeuGluIleGlyIl : 348 !!:!:!!!:!..!||| |||:!!..!|||! !..!..! ! !||||||!.! euTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluIleAlaGl 807346 : TGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACA : 807402 349 : eLysSerTyrMetIleAspTrpTyrArgLeuProGlyLysGluGlyLeuGlyIleMet : 367 ! :!!||| ! !|||||||||! !! !||| ! ! !!.! !! !:!!:!: nAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeu 807403 : AGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTT : 807459 368 : LeuMetMetGlnMetSerAsnAlaThrIleLysLeuThrAlaGlyLysPheMetAspL : 387 |||!!:!!:!!. .!!|||:!! !! !::::!!|||||||||||||||:!: : LeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheValProM 807460 : TTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGA : 807519 388 : euSerLeuAlaSerPheCysSerIleMetLysThrAlaLeuAlaTyrLeuAsnLeuLe : 406 !!!:!||| !!!!||| ..!|||:!!|||.!!:!! !:!!||||||::!:!!:! etAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSerValMe 807520 : TGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAAT : 807576 407 : uArg : 407 !!:! tLys 807577 : GAAG : 807581 vulgar: CbirOr27 309 407 . KQ414940.1 807287 807581 + 133 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807288 807581 133 + . gene_id 1 ; sequence CbirOr27 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807288 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807288 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807288 807581 133 + . alignment_id 1 ; Query CbirOr27 ; Align 807288 310 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 295 -> 405 Target range: 807260 -> 807590 296 : TyrSerLeuIleThrGluTrpAsnAsnSerAspSerIleAlaIleLeuThrTyrPheP : 315 !:! !!!!:!:..!! !!:!!..!.!|||!:!:!!||| !|||! ! !||| PheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheV 807261 : TTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCG : 807318 316 : heLeuPheValSerPheAlaPheAsnIlePheMetPheCysHisIleGlyGluLeuLe : 334 !!|||.!.|||!!!!!. !.!!.!.:!:!:!:!:!:!..!:!! |||.!. !|| alLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLe 807319 : TTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACT : 807375 335 : uThrGluGlnCysIleLysValGlyTyrThrSerTyrLysIleGluTrpTyrGluLeu : 353 | !..!!:! ! !:!!:!!!.! ! .!!:!!||| ! ! ||||||...! ! uGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCys 807376 : CGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGC : 807432 354 : ProGlyLysAlaAlaLeuAspLeuMetPheMetIleThrMetSerArgHisProValG : 373 ! !||| ! |||||| !||||||:!:!!.!!:||| ! .!!!.! ||| !! HisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrA 807433 : CACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATC : 807492 374 : lnIleThrAlaGlyLysLeuIleSerLeuSerPheThrAsnPheGlyAsnValLeuLy : 392 ::|||||||||||||||!!!:!! !!:!!!:!.!! !!.!||| !.!.:!!||||| rgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLy 807493 : GTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAA : 807549 393 : sThrSerValAlaTyrMetAsnLeuIleArgThrAlaLeu : 405 |.!!|||! !:!!|||:!!::!:!!!!:!:!..! !:!! sAlaSerGlySerTyrLeuSerValMetLysValMetMet 807550 : AGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATG : 807590 vulgar: CbirOr32 295 405 . KQ414940.1 807260 807590 + 155 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807261 807590 155 + . gene_id 1 ; sequence CbirOr32 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807261 807590 . + . KQ414940.1 exonerate:protein2genome:local exon 807261 807590 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807261 807590 155 + . alignment_id 1 ; Query CbirOr32 ; Align 807261 296 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr38PNC Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 190 Query range: 120 -> 211 Target range: 806538 -> 806820 121 : IleGluValLeuGlnLeuLeuGlnValSerValAsnPheThrSerGlnCysGlyHisV : 140 :!: !:!!|||||| !:!!!!.:!!! ! !!||| !..!:!!!!.||||||:!!! ValLeuLeuLeuGlnGlyMetHisIlePhePheAsnAlaValAlaHisCysGlyAsnA 806539 : GTGTTACTGCTGCAAGGGATGCACATTTTCTTCAACGCCGTGGCTCACTGCGGCAACG : 806596 141 : alGlyPhePhePheAspLeuThrMetHisMetCysGlyGlnPheLysIleLeuGlnMe : 159 !|||.!!||||||..!||||||||||||:!!||||||||||||:!!||||||:!!|| spGlyLeuPhePheSerLeuThrMetHisLeuCysGlyGlnPheGluIleLeuLysMe 806597 : ACGGCCTCTTCTTCAGCCTGACGATGCATCTGTGCGGTCAGTTTGAAATTCTGAAGAT : 806653 160 : tGluLeuAlaGluMetGlyArgAsp<-><-><->CysArgAsnLysPheAspIleLeu : 175 |.!.|||||||||!!:! ! !!!: ||||||!!.::!.!!! !:!!||| tAsnLeuAlaGluIleGluPheGluAlaIleAlaCysArgLysArgIleGlyValLeu 806654 : GAATCTGGCGGAGATCGAGTTCGAGGCGATCGCTTGTCGGAAGCGAATCGGCGTTCTC : 806710 176 : LeuLysArgHisArgPheLeuIleHisLeuAlaTyrHisLeuGluArgAlaPheThrL : 195 :!!||||||||| !! ||| |||.!! !! !!||||||!:!::!|||!:!: ValLysArgHisCysLysLeuAlaValLeuThrAsnAspLeuGluGlnSerPheSerM 806711 : GTGAAACGACACTGCAAACTGGCGGTGTTGACCAACGATCTCGAGCAGAGCTTCAGTA : 806770 196 : euValIleLeuAlaGlnLeuPheIleSerMetPheLeuLeuCysValGlu : 211 !!:!!||||||!.!||||||.!.!!:||| !!!.|||:!!||||||||| etIleIleLeuValGlnLeuMetMetSerAlaLeuLeuIleCysValGlu 806771 : TGATTATTCTGGTGCAACTCATGATGAGTGCGTTGCTAATTTGCGTAGAA : 806820 vulgar: CbirOr38PNC 120 211 . KQ414940.1 806538 806820 + 190 M 47 141 G 0 9 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806539 806820 190 + . gene_id 1 ; sequence CbirOr38PNC ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 806539 806820 . + . KQ414940.1 exonerate:protein2genome:local exon 806539 806820 . + . insertions 9 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 806539 806820 190 + . alignment_id 1 ; Query CbirOr38PNC ; Align 806539 121 141 ; Align 806689 168 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr36 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 233 Query range: 274 -> 386 Target range: 807257 -> 807593 275 : GlyPheMetLeuIleValSerLeuArgLeuGlyAspLeuSerMetIleIleHisSerV : 294 ||||||:!:!!!:!:|||:!!|||!!! ! !||| ! ! !:!:...||| GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 295 : alThrValLeuLeuLeuMetMetIleGlnLeuSerPheTyrThrPheAlaGlyAspCy : 313 !!..!:!!:!!:!! !:!!:!!|||||||||! !.!!|||.!!!:!||||||:!! heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 314 : sLeuGluMetArgSerThrAlaLeuSerTyrAlaIleTyrAspTyrAsnTrpTyrGln : 332 |||||| !|||!!! !! !:!!:!! ! ||| !||||||! ! !||||||!:: rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 333 : LeuProThrGlyIleAlaLysAsnPheGlnIleMetLeuMetArgAlaSerIleProH : 352 ! !! ! ! ! !|||!:!:!!.!!! :!:!!::!! |||!.!!:! |||: CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 353 : isGlnLeuThrAlaGlyLysPheValSerLeuAsnMetLeuThrPheLysAspIleLe : 371 !!!:::!!|||||||||||||||||| !!:!!|||:!:!!!|||||||||!!:||||| yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 372 : uLysSerThrValSerTyrLeuSerValLeuArgValMetMetAsn : 386 ||||:!!:!!! !|||||||||||||||:!!!:!|||||||||:!! uLysAlaSerGlySerTyrLeuSerValMetLysValMetMetAsp 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: CbirOr36 274 386 . KQ414940.1 807257 807593 + 233 M 112 336 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807593 233 + . gene_id 1 ; sequence CbirOr36 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807593 233 + . alignment_id 1 ; Query CbirOr36 ; Align 807258 275 336 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 284 Query range: 12 -> 162 Target range: 450 -> 3 13 : AspAsnAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProCysI : 34 ..!!:!|||||||||||||||! !||||||||| :!!||| !||||||.!!|||||| . SerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnP 450 : AGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGT : 387 35 : leValSerArgThrThrTrpThrIlePheLeuProLeuGlnIleValIleSerTrpIleIleVa : 55 !! !|||!.! ! ! ! !.!|||! !! ! !|||.!. ||||||!!!!::! ! !:! heSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsn---ValIleCysTyrThrAlaIl 386 : TCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAAC---GTGATCTGCTACACCGCAAT : 327 56 : lAlaIleIleThrValProCysLeuLeuHisValLeuPheGluValLysAspIleGlnThrArg : 76 ! !.!! ! !:!!||||||! !||||||:!!:!!.!.||| ! ! !.!! ! |||!:! eLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLys 326 : ACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAA : 264 77 : LeuHisValIleGlyProLeuLeuHisArgLeuIleGlyTrpValAsnTyrTrpThrLeuLeuA : 98 :!! ! :!!:!!||||||||| !||| !!:!!.!! !! :!!!:!||| ! !|||||| ValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuL 263 : GTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGC : 198 99 : snCysSerAspAspIleArgAsnCysIleLeuHisMetGluThrAspTrpLysThrMetArgAr : 119 ! !! ! !|||!.!:!!! !:!! !||||||||||||||||||!:!|||! ! || euArgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrAr 197 : TGCGACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgag : 135 120 : gThrGluAspArgGluValMetLeuGlnTyrAlaLysPheGlyArgPheLeuAlaIleValCys : 140 | ||| :::||||||||||||:!!||||||||||||.!!|||!:! !|||||| !!||| gLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCys 134 : aaaggagaagaaagaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGT : 72 141 : GlyLeuIleMetHisGlyGlyThrLeuLeuPheSerIleValLysSerIleLysThrIleThrV : 162 !.!:!!.!!!!:|||||||||! !||| !!:!!!!:!!:!!! !:!! !! |||!!:..!| AlaIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaSerThrThrMetValV 71 : GCGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTG : 6 163 : al : 162 || al 5 : TC : 4 vulgar: CbirOr25 12 162 . LHQN01027980.1 450 3 - 284 M 35 105 G 1 0 M 114 342 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4 450 284 - . gene_id 1 ; sequence CbirOr25 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4 450 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4 450 . - . insertions 0 ; deletions 1 LHQN01027980.1 exonerate:protein2genome:local similarity 4 450 284 - . alignment_id 1 ; Query CbirOr25 ; Align 451 13 105 ; Align 346 49 342 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 175 Query range: 333 -> 393 Target range: 4381 -> 4201 334 : GlnCysLysArgValGlyGluIleAlaTyrMetThrAsnTrpTyrLysLeuHisHisLysTh : 354 |||||| !!:!|||||||||:!:!.!|||||||||:!!|||||| ! |||! !!.!:!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 355 : rAlaLeuAsnLeuValLeuIleIleAlaGlnSerAsnAsnValIleLysLeuThrAlaGlyL : 375 ! !|||:!!|||:!!|||||||||.!!!:!|||||| |||:!!:!!:!!|||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 376 : ysLeuPheGlnLeuSerMetThrThrPheGlyAspIleIleLysSerSerValIle : 393 ||:::|||...:::|||:!: !||||||||||||:!!! !:!!!!!!:!:!!:!! ysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeuVal 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTTGTT : 4202 vulgar: CbirOr25 333 393 . LHQN01027980.1 4381 4201 - 175 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4202 4381 175 - . gene_id 2 ; sequence CbirOr25 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4202 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4202 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4202 4381 175 - . alignment_id 2 ; Query CbirOr25 ; Align 4382 334 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 333 -> 387 Target range: 1990 -> 1822 334 : GlnCysLysArgValGlyGluIleAlaTyrMetThrAsnTrpTyrLysLeuHisHisLysTh : 354 :!! !! !:!||||||! !! !!.!|||||||||.!.||||||::!||| !!!.||||| GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysTh 1990 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAAC : 1930 355 : rAlaLeuAsnLeuValLeuIleIleAlaGlnSerAsnAsnValIleLysLeuThrAlaGlyL : 375 |||||||..!!!!|||:!!||||||:!!::!|||!:!! |||||||||:!!|||||||||| rAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyL 1929 : TGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAA : 1867 376 : ysLeuPhe<-><->GlnLeuSerMetThrThrPheGlyAspIle : 387 ||!!! ! !! !|||:!:.!!||||||||||||:!: ysPheValTyr***ThrSerSerValAlaThrPheGlyAspVal 1866 : AATTCGTATACTGAACATCGTCTGTCGCAACATTTGGCGATGTG : 1823 vulgar: CbirOr25 333 387 . LHQN01027980.1 1990 1822 - 120 M 44 132 G 0 6 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1823 1990 120 - . gene_id 3 ; sequence CbirOr25 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1823 1990 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1823 1990 . - . insertions 6 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1823 1990 120 - . alignment_id 3 ; Query CbirOr25 ; Align 1991 334 132 ; Align 1853 378 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 186 Query range: 9 -> 157 Target range: 471 -> 36 10 : SerAsnValAsnCysGluGlyAspIleValAsnThrLeuIleTrpAsnArgTrpLeuLeuArgV : 31 !!!.!.:!!||| !.!..!! !! ! !!!:!||| |||||||||||| !:!!!:! ThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysS 471 : ACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAA : 408 32 : alLeuGlyIleTrpProLeuValTyrProAsnThrThrLysIleGluLysIleIleAlaMetPh : 52 !:!!|||! !||||||! ! !!! !!||| :!!|||!:!! !|||:!! .! erIleGlyThrTrpProGlnPheSerSerAsn---------LeuGluArgAsnIleSerArgIl 407 : GCATAGGCACATGGCCACAGTTCTCGTCGAAC---------CTCGAGAGAAACATCTCTCGAAT : 354 53 : eSerPheValLeuCysTrpIleValLeuSerLeuPheLeuValLeuThrSerIleTyrThrPhe : 73 .! ! !|||:!!|||!::! !!.!:!! !!!!! :!!:!!! ! !|||:!::!! !.!. eLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMet 353 : ATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATG : 291 74 : SerGluArgSerIleMetArgGluLysMetLysMetLeuGlyProLeuGlyTyrValPhePheS : 95 !|||!:!.!!! !.!. ! !|||:!!|||!!:||||||||||||.!!:!! ! ! |||! LeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyProLeuSerHisTrpValPheC 290 : CTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCT : 225 96 : erMetLeuLysTyrPhePheLeuValAlaArgHisLysSerIleArgGlnCysValGlnValLe : 116 !!!!::!!!..||| !.!.|||:!! !|||!.!|||!!!|||!.!!!.! !|||.!. !:! ysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPheValAsnHisMe 224 : GTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTTTGTCAATCATAT : 162 117 : uSerAlaAspTrpArgArgValGluGluAspAspHisArgGluIleMetMetArgGlyAlaGlu : 137 !..!.!!|||||||||! !..! ... ::: :::|||:::|||:!!!:! !|||:!! tGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLys 161 : GGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGCTGAAGTACGCAAAA : 99 138 : LysGlyHisLeuLeuSerLysPheCysIleAlaPheMetTyrCysGlyGlyLeuSerTyr : 157 .!!!..! ! !:!!! |||||| !|||!!::!! !!||| !|||.!!||| PheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleLeuGlyTyr 98 : TTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTATACTTGGATAT : 37 vulgar: CbirOr32 9 157 . LHQN01027980.1 471 36 - 186 M 32 96 G 3 0 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 37 471 186 - . gene_id 1 ; sequence CbirOr32 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 37 471 . - . LHQN01027980.1 exonerate:protein2genome:local exon 37 471 . - . insertions 0 ; deletions 3 LHQN01027980.1 exonerate:protein2genome:local similarity 37 471 186 - . alignment_id 1 ; Query CbirOr32 ; Align 472 10 96 ; Align 376 45 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 140 Query range: 336 -> 395 Target range: 4381 -> 4204 337 : GlnCysIleLysValGlyTyrThrSerTyrLysIleGluTrpTyrGluLeuProGlyLysAl : 357 ||||||:!:||||||||| ! ..! !|||! !! !!!:|||||| ! |||||| !!:! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 358 : aAlaLeuAspLeuMetPheMetIleThrMetSerArgHisProValGlnIleThrAlaGlyL : 378 ! !|||||||||!!:.!.!!:|||||| |||!.! !|||:!!||||||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 379 : ysLeuIleSerLeuSerPheThrAsnPheGlyAsnValLeuLysThrSerVal : 395 ||:::... :::|||.!! !!..||||||:!!||| !:!!|||!:!:!! ysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeu 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTT : 4205 vulgar: CbirOr32 336 395 . LHQN01027980.1 4381 4204 - 140 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4205 4381 140 - . gene_id 2 ; sequence CbirOr32 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4205 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4205 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4205 4381 140 - . alignment_id 2 ; Query CbirOr32 ; Align 4382 337 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 305 Query range: 0 -> 164 Target range: 495 -> 3 1 : MetThrGlnValLysCysLysProValAspIleAlaTyrGluAsnValAsnAspTyrSerLeuG : 22 |||!:!.!.! !||| ! ! !..!!!:||| ! ! !!:!||||||||||||| MetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuG 495 : ATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCC : 432 23 : lnIleAsnArgTrpCysLeuLysProIleGlyAlaTrpProLeuLysAspSerAlaIleGluLy : 43 || |||||||||...:!!||| !||||||.!!||||||! ! ...||| !:!!|||!: lnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerAsnLeuGluAr 431 : AGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGAACCTCGAGAG : 369 44 : sThrIleAlaPheIleGlnValAlaAlaCysSerThrThrIleAlaIleValThrValProCys : 64 !!.!|||:!! ||| ! !!.! !|||! !|||.!!||| !.!! !! !:!!|||||| gAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCys 368 : AAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGT : 306 65 : IleLeuTyrValLeuLeuGluAspAsnSerPheLysMetLysLeuSerAlaLeuGlyProLeuL : 86 |||:!!:!!:!!|||||| ! ...!!!||| ! ! !|||:!!!.! !|||||||||||| SerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlyProLeuS 305 : TCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGA : 240 87 : euHisArgIleIleGlySerIleSerTyrUnkThrLeuLeuLysArgSerLysAspIleArgAs : 107 !||| !!:!:.!! !!! !|||||||||...! !|||||| !||| !!||| !|||!.! ! erHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHi 239 : GCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCA : 177 108 : pCysIleGlnHisMetGlnAlaAspTrpArgLeuValArgArgValGlnAspArgGluValMet : 128 !! !:!!.!.||||||:!!.!!||||||||| !..! ||| ::: :::||||||||| sPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMet 176 : CTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATG : 114 129 : LeuGlnTyrAlaLysPheGlyArgPheIleAlaGlyIleGlyAlaIleIleMetUnkGlyGlyG : 150 |||:!!||||||||||||.!!|||!:! ||| !.!! !!||||||.!!!!: |||||| LeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyI 113 : CTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTA : 48 151 : lnLeuLeuPheGlyThrThrArgAlaIleLysThrValLysIle : 164 !||| !!:! !!..!! !! !||| !! |||:!! :!! leLeuGlyTyrCysValMetThrAlaSerThrThrMetValVal 47 : TACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTC : 4 vulgar: CbirOr24PSE 0 164 . LHQN01027980.1 495 3 - 305 M 164 492 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4 495 305 - . gene_id 1 ; sequence CbirOr24PSE ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4 495 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4 495 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4 495 305 - . alignment_id 1 ; Query CbirOr24PSE ; Align 496 1 492 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 174 Query range: 325 -> 394 Target range: 4381 -> 4085 326 : GlnSerLysAsnIleGluAsnMetValTyrMetThrAspTrpTyrUnkLeuProHisLysTh : 346 |||!!! !!!.:!!! .!.:!!||||||||||||||||||||| ||||||!!.!:!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 347 : rAlaLeuCysPheIleLeuIleIleMetArgSerAsnTyrThrIleLysMetThrAlaGlyA : 367 ! !||| !!!.||||||||||||! ||||||||| ..!:!!:!!!!:|||||||||. gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 368 : snLeuValTyrLeuLeuIleAlaThrPheGlyAsp >>>> Target Intron 1 >>>> : 379 ..::: ::::::! !:!! !|||||||||||| 89 bp ysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATgt......................... : 4220 380 : MetIleLysThrSerMetAlaTyrLeuAsnLeuLeuArgThrMetThr : 394 :!::!!||||||.!!.!.||||||||||||:!!||| !! !|||:!! ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMetSer 4219 : agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAAATGTCC : 4086 vulgar: CbirOr24PSE 325 394 . LHQN01027980.1 4381 4085 - 174 M 53 159 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4086 4381 174 - . gene_id 2 ; sequence CbirOr24PSE ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4223 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4086 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4086 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4086 4381 174 - . alignment_id 2 ; Query CbirOr24PSE ; Align 4382 326 159 ; Align 4134 379 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 325 -> 379 Target range: 1990 -> 1822 326 : GlnSerLysAsnIleGluAsnMetValTyrMetThrAspTrpTyrUnkLeuProHisLysTh : 346 :!!!!!! !!.:!!! !...! ||||||||||||!!:|||||| ||| !!!!.||||| GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysTh 1990 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAAC : 1930 347 : rAlaLeuCysPheIleLeuIleIleMetArgSerAsnTyrThrIleLysMetThrAlaGlyA : 367 ||||||| !!|||:!!:!!|||||| ||||||!:! ..!||||||!!:|||||||||! rAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyL 1929 : TGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAA : 1867 368 : snLeuValTyr<-><->LeuLeuIleAlaThrPheGlyAspMet : 379 !.!!!|||||| ! !! !:!!|||||||||||||||:!! ysPheValTyr***ThrSerSerValAlaThrPheGlyAspVal 1866 : AATTCGTATACTGAACATCGTCTGTCGCAACATTTGGCGATGTG : 1823 vulgar: CbirOr24PSE 325 379 . LHQN01027980.1 1990 1822 - 124 M 45 135 G 0 6 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1823 1990 124 - . gene_id 3 ; sequence CbirOr24PSE ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1823 1990 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1823 1990 . - . insertions 6 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1823 1990 124 - . alignment_id 3 ; Query CbirOr24PSE ; Align 1991 326 135 ; Align 1850 371 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr29 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 344 -> 401 Target range: 4372 -> 4201 345 : LysIleAlaSerAlaValTyrGlyIleAsnTrpTyrAspLeuProGlyHisLysAlaLeuHi : 365 |||:!!!.!..!!.!|||||| !! !:!!|||||| !!|||||| !...!:! !||| ! LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAs 4372 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGA : 4312 366 : sLeuValMetIleIleThrMetSerGlnTyrProProLysLeuThrAlaGlyLysPheValA : 386 !|||:!!:!!||||||||| |||.!. ! !:!!:!!||||||||||||... pLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLysIlePheH 4311 : TTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaaaatattcc : 4249 387 : spPheSerLeuSerThrPheSerThrValLeuArgThrSerIleVal : 401 ...||||||! !||||||.!! !||| !..!|||!:!:!!||| isMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeuVal 4248 : atatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTTGTT : 4202 vulgar: CbirOr29 344 401 . LHQN01027980.1 4372 4201 - 115 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4202 4372 115 - . gene_id 1 ; sequence CbirOr29 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4202 4372 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4202 4372 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4202 4372 115 - . alignment_id 1 ; Query CbirOr29 ; Align 4373 345 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 158 Query range: 338 -> 392 Target range: 4381 -> 4219 339 : GlnCysGlyGlnIleGlyAspThrAlaTyrMetThrAsnTrpTyrLeuLeuArgArgAsnAs : 359 |||||| !:!!:!!|||!!:..!!.!|||||||||:!!||||||! !|||! !!:!!..!. GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 360 : nAlaValGlyPheValLeuIleIleLeuLysSerAsnValValValLysIleThrAlaGlyL : 380 . !:!!! !!!.:!!||||||||| !::!|||||||||||||||:!!||||||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 381 : ysMetIleGluLeuSerLeuSerThrPheGlyAspVal : 392 ||:::......:::||||||! !||||||||||||||| ysIlePheHisMetSerLeuTyrThrPheGlyAspVal 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATGTA : 4220 vulgar: CbirOr26 338 392 . LHQN01027980.1 4381 4219 - 158 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4220 4381 158 - . gene_id 1 ; sequence CbirOr26 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4220 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4220 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4220 4381 158 - . alignment_id 1 ; Query CbirOr26 ; Align 4382 339 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 341 -> 392 Target range: 1981 -> 1822 342 : GlnIleGlyAspThrAlaTyrMetThrAsnTrpTyrLeuLeuArgArgAsnAsnAlaValGl : 362 :!!:!!|||! ! !!.!|||||||||.!.||||||! !||| !!:!!!.!.!|||:!!|| LysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGl 1981 : AAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGG : 1921 363 : yPheValLeuIleIleLeuLysSerAsnValValValLysIleThrAlaGlyLysMetIle< : 383 |||||||:!!||||||! !!:!|||!:!:!!|||:!!||||||||||||||||||.!.:!! yPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheValT 1920 : TTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTAT : 1858 384 : -><->GluLeuSerLeuSerThrPheGlyAspVal : 392 !! !|||:!!:!!||||||||||||||| yr***ThrSerSerValAlaThrPheGlyAspVal 1857 : ACTGAACATCGTCTGTCGCAACATTTGGCGATGTG : 1823 vulgar: CbirOr26 341 392 . LHQN01027980.1 1981 1822 - 125 M 41 123 G 0 6 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1823 1981 125 - . gene_id 2 ; sequence CbirOr26 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1823 1981 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1823 1981 . - . insertions 6 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1823 1981 125 - . alignment_id 2 ; Query CbirOr26 ; Align 1982 342 123 ; Align 1853 383 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 136 Query range: 343 -> 399 Target range: 4372 -> 4204 344 : GlnIleGlyArgSerAlaTyrMetThrAsnTrpTyrLeuLeuProGlyAsnThrAlaLeuGl : 364 :!!:!!|||..! !!.!|||||||||:!!||||||! !|||||| !!..! ! !|||! LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAs 4372 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGA : 4312 365 : yLeuThrMetIleIleLeuArgSerAsnValAlaLeuLysIleThrAlaGlyLysPheValG : 385 !|||! !:!!|||||| !||||||||||||!.!:!!:!!|||||||||||||||... . pLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLysIlePheH 4311 : TTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaaaatattcc : 4249 386 : lnLeuSerPheValThrPheGlyGlyValIleLysSerAlaLeu : 399 ..:::|||.!! !|||||||||! !|||! !:!!!!! !||| isMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeu 4248 : atatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTT : 4205 vulgar: CbirOr28 343 399 . LHQN01027980.1 4372 4204 - 136 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4205 4372 136 - . gene_id 1 ; sequence CbirOr28 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4205 4372 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4205 4372 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4205 4372 136 - . alignment_id 1 ; Query CbirOr28 ; Align 4373 344 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 343 -> 384 Target range: 1981 -> 1858 344 : GlnIleGlyArgSerAlaTyrMetThrAsnTrpTyrLeuLeuProGlyAsnThrAlaLeuGl : 364 :!!:!!||| !!!.!!.!|||||||||.!.||||||! !||| !! !!!.||||||||||| LysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGl 1981 : AAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGG : 1921 365 : yLeuThrMetIleIleLeuArgSerAsnValAlaLeuLysIleThrAlaGlyLysPheVal : 384 |!!!..!|||||||||! !||||||!:!:!!!.!:!!|||||||||||||||||||||||| yPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheVal 1920 : TTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTA : 1859 vulgar: CbirOr28 343 384 . LHQN01027980.1 1981 1858 - 124 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1859 1981 124 - . gene_id 2 ; sequence CbirOr28 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1859 1981 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1859 1981 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1859 1981 124 - . alignment_id 2 ; Query CbirOr28 ; Align 1982 344 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 196 Query range: 21 -> 169 Target range: 441 -> 0 22 : TyrAlaPheLysLeuAsnSerTrpIleLeuGlySerLeuGlyIleTrpProLeuThrIleArgA : 43 |||::!.!!:!!! !||| !!||| :!! !|||:!!|||! !||||||! ! ! !| TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerA 441 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGA : 378 44 : snIleGlyGlnTyrValSerAsnIleThrIleValPheTyrAsnPheSerPheValPheAlaIl : 64 ||:!!! !::! !!:!!|||...||| !! !|||.!!! ! !! !:!!.!.:!!|||:!!|| snLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIl 377 : ACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGAT : 315 65 : eValProPheThrLeuTyrIleMetTyrAspAlaLysAspIleAsnAlaLysLeuArgSerCys : 85 |:!!|||! !:!!|||:!!:!!||| !!: ! ! !.!! !!.!!|||:!!!:!! ! ! eIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeu 314 : AATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTC : 252 86 : GlyLeuLeuAlaPheCysLeuThrAlaMetIleLysTyrLeuIleLeuAlaIleArgArgProL : 107 |||! !|||::! !!! :!! !..!!!:|||!..||| !!!:||| !:!:|||||| !! GlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysT 251 : GGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAA : 186 108 : ysIleGlnLeuCysIleGluTyrIleLysTyrAspTrpTrpGlnValThrPheValSerAspAr : 128 |||!!.! !! !:!!.!.:!!!!::!! !|||||| ! !..!||| ... :: hrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLy 185 : CCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaa : 123 129 : gGluMetMetLeuLysTyrAlaValThrGlyArgAsnLeuThrIleIleGlyAlaLeuPheMet : 149 :|||:::||||||||||||||| ! !.!!||| !! !.!!|||.!! !!|||:!!|||!!: sGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIle 122 : agaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATCTTCATA : 60 150 : TyrGlyAlaGlyIleIleTyrTyrAlaIleLeuIleProIleAsnThrIleLysIleIle : 169 :!!||| ||||||:!! |||..!:!!:!!! ! !! !!.!|||!!: :!!:!: HisGly---GlyIleLeuGlyTyrCysValMetThrAlaSerThrThrMetValValVal 59 : CACGGT---GGTATACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTG : 1 vulgar: CbirOr33 21 169 . LHQN01027980.1 441 0 - 196 M 130 390 G 1 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1 441 196 - . gene_id 1 ; sequence CbirOr33 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1 441 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1 441 . - . insertions 0 ; deletions 1 LHQN01027980.1 exonerate:protein2genome:local similarity 1 441 196 - . alignment_id 1 ; Query CbirOr33 ; Align 442 22 390 ; Align 52 153 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 196 Query range: 24 -> 162 Target range: 441 -> 36 25 : TyrThrMetGlnLeuCysGlyTrpValLeuLysProIleGlyMetTrpTyrLeuIleGlnAspS : 46 |||!:!:!:|||! ! ! !!|||!.!:!!||| !||||||! ||| ! !.!!..!...! TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerA 441 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGA : 378 47 : erCysSerArgAsnGluLysIleValSerIleAlaLeuIleValValCysPheSerAlaLeuCy : 67 :! !..!|||||| :!!||| ! !|||! !|||:!!|||!:!!!!|||:!! snLeuGluArgAsn---------IleSerArgIleLeuAsnValIleCysTyrThrAlaIleLe 377 : ACCTCGAGAGAAAC---------ATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACT : 324 68 : sPheValLeuIleProSerGlyLeuTyrLeuPheLeuValLysGlnAspValTyrAlaLeuIle : 88 ||| !:!!||||||!!!..!|||:!!|||.!.|||! !||| ! ! !!|||.!! !:!: uPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysVal 323 : ATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTG : 261 89 : LysLeuLeuGlyProValIlePheCysLeuThrSerThrIleLysTyrCysTyrLeuGlyThrA : 110 |||:!!|||||||||:!!! ! !!! :!! !!!!! !|||!..||| ! ||| ! !| LysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuA 260 : AAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGC : 195 111 : rgGlyAlaAlaPheGlyArgCysLeuArgHisValThrAsnAspTrpArgLeuValArgAspGl : 131 || !! !.!!.!. !!.!! !:!!!.!|||:!! !!.!||||||||| !..! :: rgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLy 194 : GACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaa : 132 132 : nAspHisArgGluIleMetLeuArgGlyAlaLeuIleGlyArgArgLeuThrMetLeuCysAla : 152 :::: :::|||:::||||||!:! !||| !.!!.!!||| ! !.!!!!:!!!|||||| sGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAla 131 : ggagaagaaagaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCG : 69 153 : IlePheLeuTyrThrGlyGlyLeuSerTyr : 162 ||||||:!!:!! !||| !|||.!!||| IlePheIleHisGlyGlyIleLeuGlyTyr 68 : ATCTTCATACACGGTGGTATACTTGGATAT : 37 vulgar: CbirOr30 24 162 . LHQN01027980.1 441 36 - 196 M 26 78 G 3 0 M 109 327 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 37 441 196 - . gene_id 1 ; sequence CbirOr30 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 37 441 . - . LHQN01027980.1 exonerate:protein2genome:local exon 37 441 . - . insertions 0 ; deletions 3 LHQN01027980.1 exonerate:protein2genome:local similarity 37 441 196 - . alignment_id 1 ; Query CbirOr30 ; Align 442 25 78 ; Align 364 54 327 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 343 -> 411 Target range: 1990 -> 1709 344 : GlnTyrSerThrValAlaSerAlaValTyrGlyIleAsnTrpTyrAspLeuSerGlyLysLy : 364 :!! !!!!! !|||!.!.!! !|||||| !! !.!.|||||| |||||| !|||! GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysTh 1990 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAAC : 1930 365 : sAlaLeuAspLeuLysLeuIleIleAlaMetSerArgTyrProValLysLeuThrAlaGlyL : 385 ||||||! !!!! !:!!||||||:!!! |||!!! !:!!|||:!!|||||||||| rAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyL 1929 : TGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAA : 1867 386 : ysPheVal<-><->AspLeuSerLeuAsnThrPheGlyAla >>>> Target Intron : 397 |||||||| ! !|||:!! |||||||||! ! 71 bp ysPheValTyr***ThrSerSerValAlaThrPheGlyAsp++ 1866 : AATTCGTATACTGAACATCGTCTGTCGCAACATTTGGCGATgt................... : 1823 398 : 1 >>>> ValLeuArgThrSerValValTyrLeuAsnLeuLeuArgThrVal : 411 |||!!!!:!.!!||| !!!.!|||!!!|||:!!:!!||||||||| ++ValPheLysAlaSerPheAlaTyrPheAsnMetIleArgThrVal 1822 : ......agGTATTTAAAGCGTCTTTCGCCTACTTCAACATGATCCGCACAGTT : 1710 vulgar: CbirOr30 343 411 . LHQN01027980.1 1990 1709 - 109 M 44 132 G 0 6 M 9 27 5 0 2 I 0 67 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1710 1990 109 - . gene_id 2 ; sequence CbirOr30 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 1826 1990 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1826 1990 . - . insertions 6 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 1824 1825 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 1755 1825 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 1755 1756 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 1710 1754 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1710 1754 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1710 1990 109 - . alignment_id 2 ; Query CbirOr30 ; Align 1991 344 132 ; Align 1853 388 27 ; Align 1755 397 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 197 Query range: 21 -> 139 Target range: 441 -> 87 22 : TyrIlePheLysProSerSerTrpIleLeuGlySerIleGlyIleTrpProLeuThrIleCysG : 43 |||! !.!!:!! !!:! !!||| :!! !|||||||||! !||||||! ! ! ! . TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerA 441 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGA : 378 44 : lyAlaGlyHisHisValSerLysIleAlaIleValIleCysAsnPheAlaLeuSerPheAlaIl : 64 .! !! !...:!!:!!|||::!||| !! !||||||||| !! !|||:!! !|||:!!|| snLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIl 377 : ACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGAT : 315 65 : eValProCysIleLeuHisIleIleTyrAspGluLysAsnLeuAsnIleArgLeuLysLeuSer : 85 |:!!|||||| ||||||:!!!!: !!::!! !!.!!!! !!! !:!:!!|||:!! ! eIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeu 314 : AATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTC : 252 86 : GlyLeuLeuGlyPheCysIleThrAlaMetMetLysTyrCysValLeuThrIleArgArgProA : 107 |||! !|||.!! !!! :!: !..!!!:!!:!..||| !:!!||| !:!:|||||| ! GlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysT 251 : GGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAA : 186 108 : spIleGlnArgCysIleGluHisValLysSerAspTrpTrpGlnValLysPheSerSerAspAr : 128 !|||!!.!.!! !:!!.!.|||:!!:!!!!!|||||| ! !..! ...... :: hrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLy 185 : CCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaa : 123 129 : gGluLeuMetLeuLysTyrAlaGlyThrSerArg : 139 :|||:::||||||||||||||| ! !|||||| sGluValMetLeuLysTyrAlaLysPheSerArg 122 : agaagtcATGCTGAAGTACGCAAAATTTAGTCGA : 88 vulgar: CbirOr35 21 139 . LHQN01027980.1 441 87 - 197 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 88 441 197 - . gene_id 1 ; sequence CbirOr35 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 88 441 . - . LHQN01027980.1 exonerate:protein2genome:local exon 88 441 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 88 441 197 - . alignment_id 1 ; Query CbirOr35 ; Align 442 22 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 341 -> 385 Target range: 1990 -> 1858 342 : GluCysLeuGluIleGlyIleLysSerTyrMetIleAspTrpTyrArgLeuProGlyLysGl : 362 ||| ! !:!!:!!||| !||| !||||||! !!!:|||||||||||| !! !||| GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysTh 1990 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAAC : 1930 363 : uGlyLeuGlyIleMetLeuMetMetGlnMetSerAsnAlaThrIleLysLeuThrAlaGlyL : 383 !.!||||||.!!:!::!!!!:!!:...! |||!:! !..!||||||:!!|||||||||| rAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyL 1929 : TGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAA : 1867 384 : ysPheMet : 385 |||||:!: ysPheVal 1866 : AATTCGTA : 1859 vulgar: CbirOr27 341 385 . LHQN01027980.1 1990 1858 - 109 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1859 1990 109 - . gene_id 1 ; sequence CbirOr27 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1859 1990 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1859 1990 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1859 1990 109 - . alignment_id 1 ; Query CbirOr27 ; Align 1991 342 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 255 Query range: 21 -> 277 Target range: 1070 -> 296 22 : TyrAlaPheLysLeuAsnSerTrpIleLeuGlySerLeuGlyIleTrpProLeuThrIleAr : 42 |||::!.!!:!!! !||| !!||| :!! !|||:!!||| !||||||! !:!! TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSerSe 1070 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCGTC : 1010 43 : gAsnIleGlyGlnTyrValSerAsnIleThrIleValPheTyrAsnPheSerPheValPheA : 63 !|||:!!! !::! !:!!|||...||| !! !|||.!!! ! !! !:!! ! :!!|||. rAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheT 1009 : GAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCA : 947 64 : laIleValProPheThrLeuTyrIleMetTyrAspAlaLysAspIleAsnAlaLysLeuArg : 83 !!|||:!!|||! !:!!|||:!!:!!||| !!: !:!! !.!! !!.!!|||:!!!:! hrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLys 946 : CGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAA : 887 84 : SerCysGlyLeuLeuAlaPheCysLeuThrAlaMetIleLysTyrLeuIleLeuAlaIleAr : 104 ! ! !|||! !|||::! !!! :!! !..!!!:|||!..||| !!!:||| !:!:|| IleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuAr 886 : ATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCG : 824 105 : gArgProLysIleGlnLeuCysIleGluTyrIleLysTyrAspTrpTrpGlnValThrPheV : 125 |||| !! |||!::! !! !.!!.!.:!!!!::!! !|||||| ! !..!! gArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgL 823 : ACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaa : 761 126 : alSerAspArgGluMetMetLeuLysTyrAlaValThrGlyArgAsnLeuThrIleIleGly : 145 ... :::|||:::||||||||||||||| ! !.!!||| !! !.!!||| ! !! ysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCys 760 : aggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGT : 701 146 : AlaLeuPheMetTyrGlyAlaGlyIleIleTyrTyrAlaIleLeuIleProIleAsnThrIl : 166 .!!:!!|||!!::!!|||!.! !:!! !|||! !!.!!!: ! !! !!..! !:! ThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetVa 700 : ACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGT : 638 167 : eLysIleIleThrAsnGlnThr<-><->LeuArgProValValTyrProIleTyrSerGlnP : 185 ! :!::!! !|||:!!||| |||||| !:!! !! |||!!:|||!.! !. lValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyL 637 : TGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGC : 575 186 : heGlyAspValGlnAsnSerProLysTyrGluIleValTyrAlaValHisCysValCysGly : 205 !! ! |||.!.!..!:! !!! ! !!||||||||| ! ! !!!.! !:!!! !||| euLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGly 574 : TCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGA : 515 206 : TyrThrMetTyrThrValThrThrGlyThrCysGlyLeuAlaAlaLeuPheValThrHisAl : 226 !:!! ! ! !!||| !.!!! !.!!..! .!!|||.!!::! !.!...!:!!||||| PheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAl 514 : TTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGC : 452 227 : aCysGlyGlnIleGlnMetIleValSerArgLeuGlnAsnLeuLeuAspAspLysAsnLeuG : 247 |! !||||||:!: :!!:!!:!!! ! !:!!:!!:!!!!!:!!..!||| !!..! !. aSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgA 451 : GTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCA : 389 248 : luGlnThrGlnAsnIleHisGlnArgIleValAlaIleValLysArgHisValArgValGln : 267 .! !! !.!.:!! ! !.!...!||| !.!!||||||:!!!:!|||:!!|||||| ! rgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeu 388 : GAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG : 329 268 : ArgPheAlaAlaValValGluGluMetLeu : 277 !:!! !.!..!:!!:!!!!: !!!:||| Lys***ValCysLeuLeuAspLeuIleLeu 328 : AAGTAAGTATGTTTGTTGGATTTGATTTTG : 297 vulgar: CbirOr33 21 277 . LHQN01028641.1 1070 296 - 255 M 152 456 G 0 6 M 104 312 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 297 1070 255 - . gene_id 1 ; sequence CbirOr33 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 297 1070 . - . LHQN01028641.1 exonerate:protein2genome:local exon 297 1070 . - . insertions 6 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 297 1070 255 - . alignment_id 1 ; Query CbirOr33 ; Align 1071 22 456 ; Align 609 174 312 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr32 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 207 Query range: 9 -> 267 Target range: 1100 -> 323 10 : SerAsnValAsnCysGluGlyAspIleValAsnThrLeuIleTrpAsnArgTrpLeuLeuAr : 30 !!!.!.:!!||| !.!..!! !! ! !!!:!||| |||||||||||| !:!!!: ThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLy 1100 : ACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAA : 1040 31 : gValLeuGlyIleTrpProLeuValTyrProAsnThrThrLysIleGluLysIleIleAlaM : 51 ! !:!!||| !|||||| ! !::!:!!:!!!!.:!!|||!:!||||||:!! sSerIleGlyAlaTrpPro---------GlnSerSerSerAsnLeuGluArgIleIleSerA 1039 : AAGCATAGGCGCATGGCCA---------CAGTCCTCGTCGAATCTCGAGAGAATCATCTCTC : 986 52 : etPheSerPheValLeuCysTrpIleValLeuSerLeuPheLeuValLeuThrSerIleTyr : 71 .!.! ! !|||:!!|||!::! !!.!:!! !!!! :!!:!!! ! !|||:!::!! rgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIleProCysSerLeuHis 985 : GAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATCCCTTGTTCGCTGCAC : 926 72 : ThrPheSerGluArgSerIleMetArgGluLysMetLysMetLeuGlyProLeuGlyTyrVa : 92 ..!.!. !|||!:!..!! !.!. ! !|||:!!|||!!:||||||||||||.!!:!! ValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGlyProLeuSerHisTr 925 : GTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTG : 863 93 : lPhePheSerMetLeuLysTyrPhePheLeuValAlaArgHisLysSerIleArgGlnCysV : 113 ! ! |||!!!!!::!!!..||| !.!.|||:!! !|||!.!|||!!!||||||!!.! ! pValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPheP 862 : GGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTT : 800 114 : alGlnValLeuSerAlaAspTrpArgArgValGluGluAspAspHisArgGluIleMetMet : 133 !!.!. !:!!..!.!!|||||||||! !..! ... ::: :::|||||||||:!! heAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLysLysGluIleMetLeu 799 : TCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaagaaagaaataatgcTG : 740 134 : ArgGlyAlaGluLysGlyHisLeuLeuSerLysPheCysIleAlaPheMetTyrCysGlyGl : 154 !:! !|||:!! .!!!..! ! !:!!! ! !|||! !|||!!::!! !!||| LysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIl 739 : AAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTAT : 677 155 : yLeuSerTyrAsnThrIleMetProPheLeuSerGln<-><-><->ThrSerGluGlnAsnV : 172 !|||.!!||| !..!!!:! !!||| !!!!..! ..!.!!.!.:!!!.!: eLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValValGlyAsnGluThrM 676 : ACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTGGAAACGAGACTA : 614 173 : alThrValArgProMetAlaTyrLeuGlyPheAspIleLeuPheAsnLeuGlnLeuMetPro : 192 !!! !:!!||| !:!! !!! ! ! !!:! ! |||.!! :!!.!. !! !! etIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThr 613 : TGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACT : 554 193 : ValTyrValPheAlaPheCysLeuGlnCysValThrGlyIleValMetPheAsnIleThrTh : 213 :!! !!! !.!!!.!.!!! ! !|||! !:!!:!!|||.!!:!! ! !!.!! !.!!! MetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAsnThrSerAlaIl 553 : ATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAACACCAGTGCGAT : 491 214 : rValValCysCysLeuAlaAlaMetPheValAlaHisAlaCysGlyGlnValAspIleValL : 234 ! !||| !!|||.!!::! .!...!:!!||||||! !||||||:!!! !:!:|||: eSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuGlyValValM 490 : CAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGGGCGTGGTTA : 428 235 : euAlaArgValLysSerLeuValLys<->GlyGluLysArgAsnArgValGlnPheGluGln : 253 !! ! !:!!:!!..!!!!|||!.. !.!..!:::|||...!:!! !.!. ! .!. etLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLysAspAspHisPheAsp 427 : TGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAGGACGATCATTTCGAC : 368 254 : CysMetAlaIleIleValGlnHisHisValArgValLeuArg : 267 !!: !!! !||||||:!! ! |||:!!|||||||||!:! GluIleProThrIleValGluLysHisLeuArgValLeuLys 367 : GAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTGAAG : 324 vulgar: CbirOr32 9 267 . LHQN01028641.1 1100 323 - 207 M 27 81 G 3 0 M 127 381 G 0 9 M 76 228 G 0 3 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 324 1100 207 - . gene_id 1 ; sequence CbirOr32 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 324 1100 . - . LHQN01028641.1 exonerate:protein2genome:local exon 324 1100 . - . insertions 12 ; deletions 3 LHQN01028641.1 exonerate:protein2genome:local similarity 324 1100 207 - . alignment_id 1 ; Query CbirOr32 ; Align 1101 10 81 ; Align 1020 40 381 ; Align 630 167 228 ; Align 399 243 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 225 Query range: 18 -> 249 Target range: 1070 -> 386 19 : TyrThrIleGlnMetThrArgPhePheLeuArgThrIleGlyValTrpProLeuAlaLeuCy : 39 |||!:!:!!||| !!.!|||!:: :!!!:!!:!||||||!.!||||||! !:!! TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSer----- 1070 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCC----- : 1013 40 : sGluThrArgArgGluLysLeuGlyCysAlaIleValAlaAlaIleSerSerPheLeuLeuL : 60 ..!:!!!.!! !|||!:!:!! !! ! !|||:!! !!.!|||!!!! ! ! !:!!| -SerSerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValL 1012 : -TCGTCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTAC : 953 61 : euPheLeuPheIleProCysIleLeuCysThrPheLeuMetLysThrAspLeuIleThrLys : 80 ||||| !.!.||||||||| ||| !..!.!.||| ||| ! !!!! !|||||| euPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLys 952 : TATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAA : 893 81 : LeuArgPheGlyLeuGlyAlaSerThrTyrMetLeuMetAlaValAlaLysGlnTyrIleLe : 101 :!!!:!.!. |||||| !!! !!:!:!! !:!!.!...!:!! !!.. ! !!!:|| ValLysIle---LeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLe 892 : GTGAAAATA---CTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCT : 833 102 : uLeuThrArgSerLysSerIleThrGluCysIleIleGlnIleArgLysAspTrpAspArgI : 122 |||| !||| !!|||!!!||| !.!.! !.!!! !!!.!!:..!! |||||| ! !! uLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrT 832 : GTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGA : 770 123 : leMetLeuAlaArgGluThrAspLeuGluIleMetLeuAspAsnValLysPheGlyArgArg : 142 ||| |||::: |||||||||||| ! !!!.!||||||.!!||| ! hrMet------ArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyr 769 : CGAtg------agaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATAC : 716 143 : LeuSerIleValCysThrValSerMetTyrThrAlaHisValLeuArgAsnValLeuProPh : 163 !:!!||| !||||||:!!! !!!::!! !!.! :!! ! ! !|||:!! !! AlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAl 715 : GCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGC : 653 164 : eValLysProArgThrGlnIleIleGlyAsnGluThr<-><->ValArgLeuLeuLeuTyrP : 182 !!! !!! !..! :!::!!|||||||||||| :!!|||:!!|||! !! | aPheThrThrMetValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuP 652 : GTTCACCACGATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTAC : 590 183 : roValTyrArgGlyLeuPheAspValArgAsnSerProTyrPheGluIleThrGlnIleVal : 202 ||:!!|||!:!||||||.!! ||| !!..!:! !! !||||||..!! :!: ! roMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSer 589 : CAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCA : 530 203 : GlnMetMetGlyGlyTyrValIleTyrThrLeuThrIleSerAlaCysSerIleAlaAlaVa : 223 |||.!.:!:..!|||!:!:!! !!||| !.!!||||||!.! |||:!!.!!::!!. GlnPheLeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAl 529 : CAGTTTCTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGC : 467 224 : lPheValMetHisThrArgGlyGlnIleArgIleLeuMetLeuLysMetAspAspLeuAlaA : 244 !.!...! |||.!! !||||||:!: !!:!::!!||||||..!!!:!!:|||!!!!.!. aLeuThrSerHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValS 466 : TCTAACATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGA : 404 245 : spGlyLysLysArgGln : 249 .!! ! !!:!|||::! erAspAlaArgArgArg 403 : GTGATGCGAGACGCAGA : 387 vulgar: CbirOr27 18 249 . LHQN01028641.1 1070 386 - 225 M 19 57 G 2 0 M 44 132 G 1 0 M 39 117 G 2 0 M 50 150 G 0 6 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 387 1070 225 - . gene_id 1 ; sequence CbirOr27 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 387 1070 . - . LHQN01028641.1 exonerate:protein2genome:local exon 387 1070 . - . insertions 6 ; deletions 5 LHQN01028641.1 exonerate:protein2genome:local similarity 387 1070 225 - . alignment_id 1 ; Query CbirOr27 ; Align 1071 19 57 ; Align 1014 40 132 ; Align 882 85 117 ; Align 765 126 150 ; Align 609 176 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 510 Query range: 12 -> 297 Target range: 1079 -> 156 13 : AspAsnAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProCy : 33 ..!!:!|||||||||||||||! !||||||||| :!!||| !||||||||||||||| SerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGl 1079 : AGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACA : 1019 34 : sIleValSerArgThrThrTrpThrIlePheLeuProLeuGlnIleValIleSerTrpIleI : 54 ! !|||!.! ! ! ! ! !|||! !! ! !|||.!. ||||||!!!!::! ! nSerSerSerAsnLeuGluArgIleIleSerArgIleLeuAsn---ValIleCysTyrThrA 1018 : GTCCTCGTCGAATCTCGAGAGAATCATCTCTCGAATATTGAAC---GTGATCTGCTACACCG : 959 55 : leValAlaIleIleThrValProCysLeuLeuHisValLeuPheGluValLysAspIleGln : 74 !||| !.!!! ! !:!!||||||! !|||||||||:!!.!.||| !:!! !.!! ! laValLeuPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyr 958 : CAGTACTATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTAC : 899 75 : ThrArgLeuHisValIleGlyProLeuLeuHisArgLeuIleGlyTrpValAsnTyrTrpTh : 95 |||!:!:!! ! :!!:!!||||||||| !||| !!:!!.!! !! :!!!:!||| ! ThrLysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMe 898 : ACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCAT : 836 96 : rLeuLeuAsnCysSerAspAspIleArgAsnCysIleLeuHisMetGluThrAspTrpLysT : 116 !|||||| ! !! ! !||||||:!!! !.!! !||||||||||||||||||!:!| tLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgT 835 : GCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAA : 773 117 : hrMetArgArgThrGluAspArgGluValMetLeuGlnTyrAlaLysPheGlyArgPheLeu : 136 ||! !! ||| ||| :::|||:::||||||:!!||||||||||||.!!|||!:! ! hrThrMetArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAla 772 : CGACGAtgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCG : 713 137 : AlaIleValCysGlyLeuIleMetHisGlyGlyThrLeuLeuPheSerIleValLysSerIl : 157 |||||| !||| !:!!.!!!!:|||||||||! !||| !!:!!!!:!!:!!! !:!!.! AlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPh 712 : GCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTT : 650 158 : eLysThrIleThrValThrIleGlyAsnGluThrPheLeuThrHisProMetThrCysProS : 178 !! |||!!:..!|||..!:!!||||||||||||.!.:!! !!.! !:!! !!! |||! eThrThrMetValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProM 649 : CACCACGATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAA : 587 179 : erTyrSerLysIleIleAspThrArgLeuSerProValAsnGluIleAlaIleValMetGln : 198 !|||!.! !:!!:!! ..! ! !!:! !!:!!|||||||||!.!:!!:!! ||| etTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGln 586 : TGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAG : 527 199 : PheThrSerThrLeuIleValSerSerAlaThrValGlyAlaCysSerLeuThrAlaValPh : 219 ||| !||| !!!!|||!.!!:!!!!::!.!!:!!.!!!.! |||||||||::!!.!.! PheLeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLe 526 : TTTCTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCT : 464 220 : eAlaMetHisAlaCysGlyGlnLeuAsnLeuLeuTyrSerGlnLeuAsnLysLeuValGluA : 240 ..!! ||||||! !|||||||||..!:!!:!! ! !..!:!!.!. ! !!!|||...| uThrSerHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerA 463 : AACATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTG : 401 241 : spGlnGluLysGluAsnTyrIleAlaGlu<->ArgArgLeuAlaSerIleValSerHisHis : 259 || !..!:::..!... ! !! !.!. !..!:!! !!!!!||||||..! ! ||| spAlaArgArgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHis 400 : ATGCGAGACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACAT : 341 260 : LeuArgValLeu{Se} >>>> Target Intron 1 >>>> {r}PheIleSerArgVa : 269 ||||||||||||{!:} 68 bp {!}||||||||||||:! LeuArgValLeu{As}++ ++{n}PheIleSerArgIl 340 : TTGAGAGTGTTG{AA}gt.........................ag{C}TTCATATCGCGCAT : 243 270 : lGluSerIleIleHisLysIleAlaLeuValGluLeuValGlySerThrIleAlaMetCysL : 290 !|||:!!!!:|||:!!||| ..!!!!:!!||||||..! !!!!!|||||||||!!:|||: eGluAlaMetIleAsnLysAlaCysPheLeuGluLeuThrArgCysThrIleAlaIleCysV 242 : AGAGGCAATGATAAACAAAGCGTGTTTCCTGGAGTTAACGAGGTGCACGATAGCTATATGCG : 180 291 : euValGlyTyrTyrIleIleLeu : 297 !!:!!||||||||||||.!!:!! alLeuGlyTyrTyrIlePheMet 179 : TACTTGGATATTATATATTCATG : 157 vulgar: CbirOr25 12 297 . LHQN01028641.1 1079 156 - 510 M 35 105 G 1 0 M 201 603 G 0 3 M 14 42 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 157 1079 510 - . gene_id 1 ; sequence CbirOr25 ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1079 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1079 . - . insertions 3 ; deletions 1 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 157 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 157 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 157 1079 510 - . alignment_id 1 ; Query CbirOr25 ; Align 1080 13 105 ; Align 975 49 603 ; Align 369 250 42 ; Align 256 265 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 492 Query range: 5 -> 302 Target range: 1118 -> 156 6 : GlnAspHisLeuIleThrProTyrPheSerTyrAlaAspAspThrGluTyrSerIleGlnPr : 26 .!.||| ! !:!:..! !! ! .!!!:! .!!! !..!!:!!!:||||||:!!||| AsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTr 1118 : AACGACAAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTG : 1058 27 : oIleArgTrpLeuLeuArgProIleSerValTrpProValSerSerIleLys<->GluArgI : 46 !! !|||||| !:!!!:! !|||.!!!.!|||||| !|||||| !!. ||||||| pAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSerSerAsnLeuGluArgI 1057 : GAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCGTCGAATCTCGAGAGAA : 995 47 : leLeuSerAlaValLeuLeuIleValCysValPheLeuIleAlaGlyThrLeuValProCys : 66 ||:!!||| !:!!||| !:!::!!||| ! ! !:!! ! !|||:!!:!!|||||| leIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIleProCys 994 : TCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATCCCTTGT : 935 67 : AlaLeuAlaIlePheLeuAspGlnAsnLysAspValGluThrLysValArgAspPheGlyPr : 87 :!!||| !:!!.!.|||!!::!! :!! ! !! ! |||||||||!:! .!!||||| SerLeuHisValMetLeuGluLys---GluThrPheTyrThrLysValLysIleLeuGlyPr 934 : TCGCTGCACGTAATGCTGGAAAAA---GAGACTTTCTACACGAAAGTGAAAATACTCGGTCC : 875 88 : oLeuSerAsnTrpValLeuAlaSerLeuLysTyrCysSerLeuLeuSerHisValGlyAspI : 108 |||||||:!!||||||!!!..!! !:!!!..||| !! !|||||| !!.. ! ! !| oLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrI 874 : GTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCA : 812 109 : leArgArgCysLeuGluHisValAspAlaAspTrpArgAlaValThrLysHisGluAspArg : 128 |||||!.!! !!!!.!.|||:!!!!:.!!|||||||||.!!..!! ::: ||| ::: leArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLysLys 811 : TACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaagaaa : 752 129 : GluMetMetLeuArgAsnAlaLysIleGlyArgPheIleAlaLeuPheAlaAlaLeuPheMe : 149 |||:::||||||!:! !!||||||.!!.!!|||!:! |||:!!! !..!.!!:!!|||!! GluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIl 751 : gaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCAT : 689 150 : tHisSerGlyValPheSerTyrSerIlePheGlnAlaMetThrMetAsnGluSerValLeuG : 170 :|||.!!|||:!!.!!.!!|||!!!:!!.!. !|||.!.|||! !! ! !|||:!!| eHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValValG 688 : ACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTG : 626 171 : lyAspAsnAlaSer<->MetHisSerLeuProPheAlaPheTyrAspLysIleLeuAspThr : 189 ||:!!.!..!!! ! :!!!.! !||||||!!. !!.!.||| ! !:!!||| ..! lyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProVal 625 : GAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTC : 566 190 : ThrThrSerProThrTyrGluIleValPheIleMetGlnPheLeuSerThrPheValValAs : 210 !|||!:! !!! ! !!|||||||||.!!:!: |||||||||||| !|||:!!!.!|| AspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAs 565 : GATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAA : 503 211 : nSerValAlaValSerThrValSerLeuIleAlaValPheValMetHisAlaCysGlyGlnI : 231 |!!! !|||:!!|||..!:!!||||||! !::!!.!.!...! ||||||! !||||||: nThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnL 502 : CACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGT : 440 232 : leLysIleLeuIleSerLeuLeuGluAsnPheValAspGluThrSerGluLysTrpGluAsn : 251 !: :!::!!!!:! !! !:!!|||:!!||||||..!!!:.!!!!!...!:! !!:!!:!! euGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLysAsp 439 : TGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAGGAC : 380 252 : SerThrGlnGlyLysTyrAlaValIleValGluHisHisLeuArgValLeu{Se} >>>> : 269 ..! ! ! !:!! !!..!||||||||| ! |||||||||||||||{!:} AspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeu{As}++ 379 : GATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG{AA}gt..... : 322 270 : Target Intron 1 >>>> {r}PheValSerTyrIleAspLysIleThrAsnIleIleC : 282 68 bp {!}|||:!!||| !|||!!: !!!:! !|||! ! | ++{n}PheIleSerArgIleGluAlaMetIleAsnLysAlaC 321 : ....................ag{C}TTCATATCGCGCATAGAGGCAATGATAAACAAAGCGT : 219 283 : ysLeuValGluValMetGlyCysThrLeuHisMetCysLeuLeuGlyTyrTyrCysIleMet : 302 ||!!!:!!|||:!!! ! !!||||||:!! !!!:|||:!!|||||||||||| .!!||| ysPheLeuGluLeuThrArgCysThrIleAlaIleCysValLeuGlyTyrTyrIlePheMet 218 : GTTTCCTGGAGTTAACGAGGTGCACGATAGCTATATGCGTACTTGGATATTATATATTCATG : 159 vulgar: CbirOr26 5 302 . LHQN01028641.1 1118 156 - 492 M 38 114 G 0 3 M 31 93 G 1 0 M 99 297 G 0 3 M 94 282 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 157 1118 492 - . gene_id 1 ; sequence CbirOr26 ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1118 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1118 . - . insertions 6 ; deletions 1 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 157 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 157 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 157 1118 492 - . alignment_id 1 ; Query CbirOr26 ; Align 1119 6 114 ; Align 1002 44 93 ; Align 909 76 297 ; Align 609 175 282 ; Align 256 270 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 534 Query range: 0 -> 303 Target range: 1124 -> 144 1 : MetThrGlnValLysCysLysProValAspIleAlaTyrGluAsnValAsnAspTyrSerLe : 21 |||!:!.!.! !||| ! ! !..!!!:||| ! ! !!:!||||||||||| MetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLe 1124 : ATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCT : 1064 22 : uGlnIleAsnArgTrpCysLeuLysProIleGlyAlaTrpProLeuLysAspSerAlaIleG : 42 |||| |||||||||...:!!||| !|||||||||||||||! !......||| !:!!| uGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSerSerAsnLeuG 1063 : CCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCGTCGAATCTCG : 1001 43 : luLysThrIleAlaPheIleGlnValAlaAlaCysSerThrThrIleAlaIleValThrVal : 62 ||!:!! !|||:!! ||| ! !!.! !|||! !|||.!!:!! !.!!..!! !:!! luArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIle 1000 : AGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATC : 941 63 : ProCysIleLeuTyrValLeuLeuGluAspAsnSerPheLysMetLysLeuSerAlaLeuGl : 83 |||||| |||:!!|||:!!|||||| ! .!.!!!||| ! ! !|||:!!!.! !||||| ProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGl 940 : CCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGG : 878 84 : yProLeuLeuHisArgIleIleGlySerIleSerTyrUnkThrLeuLeuLysArgSerLysA : 104 ||||||| !||| !!:!:.!! !!! !|||||||||...! !|||||| !||| !!||| yProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysT 877 : TCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAA : 815 105 : spIleArgAspCysIleGlnHisMetGlnAlaAspTrpArgLeuValArgArgValGlnAsp : 124 !|||||| !!! !.!!.!.||||||:!!.!!||||||||| !..!! ||| ::: hrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLys 814 : CCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaag : 755 125 : ArgGluValMetLeuGlnTyrAlaLysPheGlyArgPheIleAlaGlyIleGlyAlaIleIl : 145 :::|||:::||||||:!!||||||||||||.!!|||!:! ||| ! ! !!.!!|||.! LysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePh 754 : aaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTT : 692 146 : eMetUnkGlyGlyGlnLeuLeuPheGlyThrThrArgAlaIleLysThrValLysIleThrV : 166 !!!: |||||| !||| !!:! !!..!! !! !|||.!!! |||:!! :!!..!| eIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetValValValV 691 : CATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGG : 629 167 : alGlyAsnGlnThrPheThrThrHisProMetThrCysProAlaTyrSerArgIleIleAsp : 186 ||||||||:!!|||.!.! ! !!.! !:!! !!! ||| !|||!.! !!:!!:!! alGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuPro 628 : TTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCA : 569 187 : ThrArgPheSerProMetAsnGluIleMetLeuValIleGlnPheValSerAlaPheAlaVa : 207 ..! ! !:! !!||||||||||||:!:|||:!! !||||||:!!|||!.!||| !!. ValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAl 568 : GTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGC : 506 208 : lSerSerAlaIleValSerValCysSerLeuAlaAlaValPheAlaMetHisAlaCysGlyG : 228 !!:!!!!::! :!!|||||| ||||||.!!::!!.!.!..!! ||||||! !|||| aAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyG 505 : GAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCC : 443 229 : lnLeuAsnValLeuTyrAlaTrpLeuAsnAspLeuIleGluGlu<->TyrGluMetGlyAsp : 247 |||||..!|||:!! !! !:!!.!.|||!!!:!:...!!: ...! ||| ! lnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgArgGlyLys 442 : AGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAG : 383 248 : ArgSerValAspGlnLysLeuAlaIleIleValGluHisHisLeuArgValLeu{Se} >> : 266 !..! ! !.!.:!!:!! !!! !||||||||| ! |||||||||||||||{!:} AspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeu{As}++ 382 : GACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG{AA}gt.. : 322 267 : >> Target Intron 1 >>>> {r}LeuValThrCysMetGluSerIleIleHisLysV : 278 68 bp {!}!!!:!!:!! !!!!:|||:!!!!:|||:!!|||! ++{n}PheIleSerArgIleGluAlaMetIleAsnLysA 321 : .......................ag{C}TTCATATCGCGCATAGAGGCAATGATAAACAAAG : 222 279 : alCysPheValMetLeuAlaGlySerThrLeuAsnMetCysLeuLeuGlyTyrTyrValIle : 298 .!||||||:!! !|||.!! !!!!!|||:!! !!!:|||:!!||||||||||||:!!.!! laCysPheLeuGluLeuThrArgCysThrIleAlaIleCysValLeuGlyTyrTyrIlePhe 221 : CGTGTTTCCTGGAGTTAACGAGGTGCACGATAGCTATATGCGTACTTGGATATTATATATTC : 162 299 : MetCysProIleLeu : 303 ||| !:!!:!! MetValAspValIle 161 : ATGGTAGATGTAATT : 145 vulgar: CbirOr24PSE 0 303 . LHQN01028641.1 1124 144 - 534 M 242 726 G 0 3 M 23 69 S 0 2 5 0 2 I 0 64 3 0 2 S 1 1 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 145 1124 534 - . gene_id 1 ; sequence CbirOr24PSE ; gene_orientation + LHQN01028641.1 exonerate:protein2genome:local cds 325 1124 . - . LHQN01028641.1 exonerate:protein2genome:local exon 325 1124 . - . insertions 3 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local splice5 323 324 . - . intron_id 1 ; splice_site "GT" LHQN01028641.1 exonerate:protein2genome:local intron 257 324 . - . intron_id 1 LHQN01028641.1 exonerate:protein2genome:local splice3 257 258 . - . intron_id 0 ; splice_site "AG" LHQN01028641.1 exonerate:protein2genome:local cds 145 256 . - . LHQN01028641.1 exonerate:protein2genome:local exon 145 256 . - . insertions 0 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 145 1124 534 - . alignment_id 1 ; Query CbirOr24PSE ; Align 1125 1 726 ; Align 396 243 69 ; Align 256 267 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr30 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 246 Query range: 24 -> 283 Target range: 1070 -> 296 25 : TyrThrMetGlnLeuCysGlyTrpValLeuLysProIleGlyMetTrpTyrLeuIleGlnAs : 45 |||!:!:!:|||! ! ! !!|||!.!:!!||| !|||||| ||| ! !.! TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrp---------ProGl 1070 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGG---------CCACA : 1019 46 : pSerCysSerArgAsnGluLysIleValSerIleAlaLeuIleValValCysPheSerAlaL : 66 .|||! |||!.! !|||!:!|||:!!||| ! !|||! !|||:!!|||!:!!!!|||: nSerSerSerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaV 1018 : GTCCTCGTCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAG : 956 67 : euCysPheValLeuIleProSerGlyLeuTyrLeuPheLeuValLysGlnAspValTyrAla : 86 !! |||..!:!!||||||!!!..!|||:!!:!!.!.|||! !|||:!! ! !!|||.!! alLeuPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThr 955 : TACTATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACG : 896 87 : LeuIleLysLeuLeuGlyProValIlePheCysLeuThrSerThrIleLysTyrCysTyrLe : 107 !:!:|||:!!|||||||||:!!! ! !!! :!! !!!!! !|||!..||| ! || LysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLe 895 : AAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCT : 833 108 : uGlyThrArgGlyAlaAlaPheGlyArgCysLeuArgHisValThrAsnAspTrpArgLeuV : 128 | ! !||| !! !.!!.!. !!!.!! !!!!!.!|||:!! !!.!||||||||| !. uLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrT 832 : GTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGA : 770 129 : alArgAspGlnAspHisArgGluIleMetLeuArgGlyAlaLeuIleGlyArgArgLeuThr : 148 .!! :::::: :::||||||||||||!:! !||| !.!!.!!||| ! !.!! hrMetArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAla 769 : CGAtgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCG : 710 149 : MetLeuCysAlaIlePheLeuTyrThrGlyGlyLeuSerTyrHisThrIleLeuProLeuSe : 169 !!:! !|||.!!||||||:!!:!! !||| !|||.!!||| !..!!!: ! !!!!!!! IleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheTh 709 : ATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCAC : 647 170 : rSerLysGlnAsnIleSerGluAsnPheThrSerArgArgValProHisThrTyrProGlyT : 190 !!!!! ! !:!: !! !||| |||! !! ! ! ! !! !!! ||| !| rThrMetValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetT 646 : CACGATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGT : 584 191 : yrAspLeuTrpPheAspProGluAlaSerProAlaTyrGluIleValPheCysValHisCys : 210 || ! ! .!! !!!:.!!!:! !! ! !!|||||||||.!!! !!!.! ! yrLysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPhe 583 : ACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTT : 524 211 : ValPheAlaLeuIleThrTyrAsnIleThrThrGlyGlyCysGlyLeuAlaAlaIlePheVa : 231 :!!! !!.!!!!|||.!! !!!.!! !.!!! !.!!! ! .!!|||.!!::! !.!... LeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuTh 523 : CTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAAC : 461 232 : lThrHisAlaCysGlyGlnValGlnIleLeuMetIleGlnMetSerAspLeuValGluGlyL : 252 !:!!||||||! !||||||:!! :!::!!|||:!:..!!!:..!|||!!!|||...! ! rSerHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspA 460 : ATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATG : 398 253 : ysArgSerLysGlyThrValGln<-><->AsnArgLeuSerValIleAlaLysHisHisVal : 270 !||| !!!:!|||! !! !.!. :!!..!:!! !!..!|||!.!:!! ! |||:!! laArgArgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHisLeu 397 : CGAGACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTG : 338 271 : ArgValLeuArgPheSerAlaSerValAspGluValLeu : 283 |||||||||!:!! !..!! !:!!||| !:!!||| ArgValLeuLys***ValCysLeuLeuAspLeuIleLeu 337 : AGAGTGTTGAAGTAAGTATGTTTGTTGGATTTGATTTTG : 297 vulgar: CbirOr30 24 283 . LHQN01028641.1 1070 296 - 246 M 16 48 G 3 0 M 216 648 G 0 6 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 297 1070 246 - . gene_id 1 ; sequence CbirOr30 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 297 1070 . - . LHQN01028641.1 exonerate:protein2genome:local exon 297 1070 . - . insertions 6 ; deletions 3 LHQN01028641.1 exonerate:protein2genome:local similarity 297 1070 246 - . alignment_id 1 ; Query CbirOr30 ; Align 1071 25 48 ; Align 1023 44 648 ; Align 369 260 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 248 Query range: 21 -> 267 Target range: 1070 -> 323 22 : TyrIlePheLysProSerSerTrpIleLeuGlySerIleGlyIleTrpProLeuThrIleCy : 42 |||! !.!!:!! !!:! !!||| :!! !||||||||| !||||||! !:!! ! TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSerSe 1070 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCGTC : 1010 43 : sGlyAlaGlyHisHisValSerLysIleAlaIleValIleCysAsnPheAlaLeuSerPheA : 63 ..! !! !... !:!!|||::!||| !! !||||||||| !! !|||:!! !|||. rAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheT 1009 : GAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCA : 947 64 : laIleValProCysIleLeuHisIleIleTyrAspGluLysAsnLeuAsnIleArgLeuLys : 83 !!|||:!!|||||| ||||||:!!!!: !!::!!:!!!.!!!! !!! !:!:!!||| hrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysValLys 946 : CGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAA : 887 84 : LeuSerGlyLeuLeuGlyPheCysIleThrAlaMetMetLysTyrCysValLeuThrIleAr : 104 :!! !|||! !|||.!! !!! :!: !..!!!:!!:!..||| !:!!||| !:!:|| IleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuAr 886 : ATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCG : 824 105 : gArgProAspIleGlnArgCysIleGluHisValLysSerAspTrpTrpGlnValLysPheS : 125 |||| ! !|||!::!.!! !.!!.!.|||:!!:!!!!!|||||| ! !..!! . gArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetArgL 823 : ACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaa : 761 126 : erSerAspArgGluLeuMetLeuLysTyrAlaGlyThrSerArgArgLeuSerThrIleSer : 145 ..... :::|||:::||||||||||||||| ! !|||||| ! !:!!! ! !!!! ysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCys 760 : aggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGT : 701 146 : ValSerSerMetTyrIleAlaGlyPheIleTyrHisLeuIleLeuProPheCysAsn<->Va : 165 ..!! !! !!!::!! !!.! !.!! !||| !:!!!!: ! !!||| !!.. || ThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMetVa 700 : ACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGATGGT : 638 166 : lHisLysIleAspAsnGlnThr<-><->IleArgProLeuValTyrProThrTyrSerGluP : 184 | ! !:!!! |||:!!||| :!:||| !||| !! |||! !|||!.!! !. lValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysGlyL 637 : TGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAGGGC : 575 185 : heHisGlnSerGlnIleSerProIleTyrGluLeuValTyrLeuAlaHisCysMetCysGly : 204 !!! !! ! !.!.! !:! !!!!: !!|||:!!||| !|||:!!!!.! !:!:! !||| euLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeuSerGly 574 : TCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGA : 515 205 : TyrThrMetTyrThrValThrAlaGlySerCysGlyLeuAlaAlaIlePheValThrHisAl : 225 !:!! ! ! !!||| !.!! !.!! ! .!!|||.!!::! !.!...!:!!||||| PheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAl 514 : TTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGC : 452 226 : aCysGlyGlnIleGluValLeuAlaSerArgLeuGluAspLeuSerHisGlyGlnAsnPheG : 246 |! !||||||:!:! |||:!! !! ! !:!!||||||!!! ! !! ! !!.. ! aSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaArgArgA 451 : GTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGAGACGCA : 389 247 : lyProSerLeuAspValAsnGlnArgIleAlaAlaIleValGluSerHisValArgIleLeu : 266 !! !!.! !||| ! !.!...!||| !!.!!|||||||||!.!|||:!!|||:!:||| rgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHisLeuArgValLeu 388 : GAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACATTTGAGAGTGTTG : 329 267 : Arg : 267 !:! Lys 328 : AAG : 324 vulgar: CbirOr35 21 267 . LHQN01028641.1 1070 323 - 248 M 143 429 G 0 3 M 8 24 G 0 6 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 324 1070 248 - . gene_id 1 ; sequence CbirOr35 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 324 1070 . - . LHQN01028641.1 exonerate:protein2genome:local exon 324 1070 . - . insertions 9 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 324 1070 248 - . alignment_id 1 ; Query CbirOr35 ; Align 1071 22 429 ; Align 639 165 24 ; Align 609 173 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr33 Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 197 Query range: 21 -> 169 Target range: 429 -> 870 22 : TyrAlaPheLysLeuAsnSerTrpIleLeuGlySerLeuGlyIleTrpProLeuThrIleArgA : 43 |||::!.!!:!!! !||| !!||| :!! !|||:!!|||! !||||||! ! ! !| TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerA 430 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGA : 493 44 : snIleGlyGlnTyrValSerAsnIleThrIleValPheTyrAsnPheSerPheValPheAlaIl : 64 ||:!!! !::! !!:!!|||...||| !! !|||.!!! ! !! !:!!.!.:!!|||:!!|| snLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIl 494 : ACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGAT : 556 65 : eValProPheThrLeuTyrIleMetTyrAspAlaLysAspIleAsnAlaLysLeuArgSerCys : 85 |:!!|||! !:!!|||:!!:!!||| !!: ! ! !.!! !!.!!|||:!!!:!! ! ! eIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeu 557 : AATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTC : 619 86 : GlyLeuLeuAlaPheCysLeuThrAlaMetIleLysTyrLeuIleLeuAlaIleArgArgProL : 107 |||! !|||::! !!! :!! !..!!!:|||!..||| !!!:||| !:!:|||||| !! GlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysT 620 : GGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAA : 685 108 : ysIleGlnLeuCysIleGluTyrIleLysTyrAspTrpTrpGlnValThrPheValSerAspAr : 128 |||!!.! !! !:!!.!.:!!!!::!! !|||||| ! !..!||| ... :: hrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLy 686 : CCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaa : 748 129 : gGluMetMetLeuLysTyrAlaValThrGlyArgAsnLeuThrIleIleGlyAlaLeuPheMet : 149 :|||:::||||||||||||||| ! !.!!||| !! !.!!|||.!! !!|||:!!|||!!: sGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIle 749 : agaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATA : 811 150 : TyrGlyAlaGlyIleIleTyrTyrAlaIleLeuIleProIleAsnThrIleLysIleIle : 169 :!!||| ||||||:!! |||..!:!!:!!! ! !! !!.!|||!!: :!!:!: HisGly---GlyIleLeuGlyTyrCysValMetThrAlaSerThrThrMetValValVal 812 : CACGGT---GGTATACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTG : 870 vulgar: CbirOr33 21 169 . LHQN01028951.1 429 870 + 197 M 130 390 G 1 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 430 870 197 + . gene_id 1 ; sequence CbirOr33 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 430 870 . + . LHQN01028951.1 exonerate:protein2genome:local exon 430 870 . + . insertions 0 ; deletions 1 LHQN01028951.1 exonerate:protein2genome:local similarity 430 870 197 + . alignment_id 1 ; Query CbirOr33 ; Align 430 22 390 ; Align 820 153 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 276 Query range: 12 -> 162 Target range: 420 -> 867 13 : AspAsnAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProCysI : 34 ..!!:!|||||||||||||||! !||||||||| :!!||| !||||||.!!|||||| . SerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnP 421 : AGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGT : 484 35 : leValSerArgThrThrTrpThrIlePheLeuProLeuGlnIleValIleSerTrpIleIleVa : 55 !! !|||!.! ! ! ! !.!|||! !! ! !|||.!. ||||||!!!!::! ! !:! heSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsn---ValIleCysTyrThrAlaIl 485 : TCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAAC---GTGATCTGCTACACCGCAAT : 544 56 : lAlaIleIleThrValProCysLeuLeuHisValLeuPheGluValLysAspIleGlnThrArg : 76 ! !.!! ! !:!!||||||! !||||||:!!:!!.!.||| ! ! !.!! ! |||!:! eLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLys 545 : ACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAA : 607 77 : LeuHisValIleGlyProLeuLeuHisArgLeuIleGlyTrpValAsnTyrTrpThrLeuLeuA : 98 :!! ! :!!:!!||| !!||| !||| !!:!!.!! !! :!!!:!||| ! !|||||| ValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuL 608 : GTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGC : 673 99 : snCysSerAspAspIleArgAsnCysIleLeuHisMetGluThrAspTrpLysThrMetArgAr : 119 ! !! ! !|||!.!:!!! !:!! !||||||||||||||||||!:!|||! ! || euArgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrAr 674 : TGCGACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgag : 736 120 : gThrGluAspArgGluValMetLeuGlnTyrAlaLysPheGlyArgPheLeuAlaIleValCys : 140 | ||| :::||||||||||||:!!||||||||||||.!!|||!:! !|||||| !!||| gLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCys 737 : aaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGT : 799 141 : GlyLeuIleMetHisGlyGlyThrLeuLeuPheSerIleValLysSerIleLysThrIleThrV : 162 !.!:!!.!!!!:|||||||||! !||| !!:!!!!:!!:!!! !:!! !! |||!!:..!| AlaIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaSerThrThrMetValV 800 : GCGATTTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTG : 865 163 : al : 162 || al 866 : TC : 867 vulgar: CbirOr25 12 162 . LHQN01028951.1 420 867 + 276 M 35 105 G 1 0 M 114 342 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 421 867 276 + . gene_id 1 ; sequence CbirOr25 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 421 867 . + . LHQN01028951.1 exonerate:protein2genome:local exon 421 867 . + . insertions 0 ; deletions 1 LHQN01028951.1 exonerate:protein2genome:local similarity 421 867 276 + . alignment_id 1 ; Query CbirOr25 ; Align 421 13 105 ; Align 526 49 342 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr35 Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 198 Query range: 21 -> 139 Target range: 429 -> 783 22 : TyrIlePheLysProSerSerTrpIleLeuGlySerIleGlyIleTrpProLeuThrIleCysG : 43 |||! !.!!:!! !!:! !!||| :!! !|||||||||! !||||||! ! ! ! . TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerA 430 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGA : 493 44 : lyAlaGlyHisHisValSerLysIleAlaIleValIleCysAsnPheAlaLeuSerPheAlaIl : 64 .! !! !...:!!:!!|||::!||| !! !||||||||| !! !|||:!! !|||:!!|| snLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIl 494 : ACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGAT : 556 65 : eValProCysIleLeuHisIleIleTyrAspGluLysAsnLeuAsnIleArgLeuLysLeuSer : 85 |:!!|||||| ||||||:!!!!: !!::!! !!.!!!! !!! !:!:!!|||:!! ! eIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeu 557 : AATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTC : 619 86 : GlyLeuLeuGlyPheCysIleThrAlaMetMetLysTyrCysValLeuThrIleArgArgProA : 107 |||! !|||.!! !!! :!: !..!!!:!!:!..||| !:!!||| !:!:|||||| ! GlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysT 620 : GGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAA : 685 108 : spIleGlnArgCysIleGluHisValLysSerAspTrpTrpGlnValLysPheSerSerAspAr : 128 !|||!!.!.!! !:!!.!.|||:!!:!!!!!|||||| ! !..! ...... :: hrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLy 686 : CCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaa : 748 129 : gGluLeuMetLeuLysTyrAlaGlyThrSerArg : 139 :|||:::||||||||||||||| ! !|||||| sGluValMetLeuLysTyrAlaLysPheSerArg 749 : agaagtcATGTTGAAGTACGCGAAATTTAGTCGA : 783 vulgar: CbirOr35 21 139 . LHQN01028951.1 429 783 + 198 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 430 783 198 + . gene_id 1 ; sequence CbirOr35 ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 430 783 . + . LHQN01028951.1 exonerate:protein2genome:local exon 430 783 . + . insertions 0 ; deletions 0 LHQN01028951.1 exonerate:protein2genome:local similarity 430 783 198 + . alignment_id 1 ; Query CbirOr35 ; Align 430 22 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 297 Query range: 0 -> 164 Target range: 375 -> 867 1 : MetThrGlnValLysCysLysProValAspIleAlaTyrGluAsnValAsnAspTyrSerLeuG : 22 |||!:!.!.! !||| ! ! !..!!!:||| ! ! !!:!||||||||||||| MetSerAsnAspLysThrValValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuG 376 : ATGAGTAACGACAAAACCGTGGTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCC : 439 23 : lnIleAsnArgTrpCysLeuLysProIleGlyAlaTrpProLeuLysAspSerAlaIleGluLy : 43 || |||||||||...:!!||| !||||||.!!||||||! ! ...||| !:!!|||!: lnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerAsnLeuGluAr 440 : AGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGAACCTCGAGAG : 502 44 : sThrIleAlaPheIleGlnValAlaAlaCysSerThrThrIleAlaIleValThrValProCys : 64 !!.!|||:!! ||| ! !!.! !|||! !|||.!!||| !.!! !! !:!!|||||| gAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCys 503 : AAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGT : 565 65 : IleLeuTyrValLeuLeuGluAspAsnSerPheLysMetLysLeuSerAlaLeuGlyProLeuL : 86 |||:!!:!!:!!|||||| ! ...!!!||| ! ! !|||:!!!.! !|||||| !!||| SerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuS 566 : TCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGA : 631 87 : euHisArgIleIleGlySerIleSerTyrUnkThrLeuLeuLysArgSerLysAspIleArgAs : 107 !||| !!:!:.!! !!! !|||||||||...! !|||||| !||| !!||| !|||!.! ! erHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHi 632 : GCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCA : 694 108 : pCysIleGlnHisMetGlnAlaAspTrpArgLeuValArgArgValGlnAspArgGluValMet : 128 !! !:!!.!.||||||:!!.!!||||||||| !..! ||| ::: :::||||||||| sPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMet 695 : CTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATG : 757 129 : LeuGlnTyrAlaLysPheGlyArgPheIleAlaGlyIleGlyAlaIleIleMetUnkGlyGlyG : 150 |||:!!||||||||||||.!!|||!:! ||| !.!! !!||||||.!!!!: |||||| LeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyI 758 : TTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATTTTCATACACGGTGGTA : 823 151 : lnLeuLeuPheGlyThrThrArgAlaIleLysThrValLysIle : 164 !||| !!:! !!..!! !! !||| !! |||:!! :!! leLeuGlyTyrCysValMetThrAlaSerThrThrMetValVal 824 : TACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTC : 867 vulgar: CbirOr24PSE 0 164 . LHQN01028951.1 375 867 + 297 M 164 492 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 376 867 297 + . gene_id 1 ; sequence CbirOr24PSE ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 376 867 . + . LHQN01028951.1 exonerate:protein2genome:local exon 376 867 . + . insertions 0 ; deletions 0 LHQN01028951.1 exonerate:protein2genome:local similarity 376 867 297 + . alignment_id 1 ; Query CbirOr24PSE ; Align 376 1 492 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 324 -> 379 Target range: 212 -> 41 325 : AspGlnSerLysAsnIleGluAsnMetValTyrMetThrAspTrpTyrUnkLeuProHisLysT : 346 !!::!!!!!! !!.:!!! !...! ||||||||||||!!:|||||| ||| !!!!.|||| GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 347 : hrAlaLeuCysPheIleLeuIleIleMetArgSerAsnTyrThrIleLysMetThrAlaGlyAs : 367 |||||||| !!|||:!!:!!|||||| ||||||!:! ..!||||||!!:|||||||||!! hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 368 : nLeuValTyr<-><->LeuLeuIleAlaThrPheGlyAspMet : 379 .!!!|||||| ! !!!!:!!|||||||||||||||:!! sPheValTyr***ThrSerPheValAlaThrPheGlyAspVal 85 : ATTCGTATACTGAACATCGTTTGTCGCAACATTTGGCGATGTG : 42 vulgar: CbirOr24PSE 324 379 . LHQN01029187.1 212 41 - 128 M 46 138 G 0 6 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 42 212 128 - . gene_id 1 ; sequence CbirOr24PSE ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 42 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 42 212 . - . insertions 6 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 42 212 128 - . alignment_id 1 ; Query CbirOr24PSE ; Align 213 325 138 ; Align 69 371 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 337 -> 382 Target range: 212 -> 77 338 : GluGlnCysGlyGlnIleGlyAspThrAlaTyrMetThrAsnTrpTyrLeuLeuArgArgAsnA : 359 |||:!! ! !:!!:!!|||! ! !!.!|||||||||.!.||||||! !||| !!:!!!.! GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 360 : snAlaValGlyPheValLeuIleIleLeuLysSerAsnValValValLysIleThrAlaGlyLy : 380 .!|||:!!|||||||||:!!||||||! !!:!|||!:!:!!|||:!!||||||||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 381 : sMetIle : 382 |.!.:!! sPheVal 85 : ATTCGTA : 78 vulgar: CbirOr26 337 382 . LHQN01029187.1 212 77 - 125 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 78 212 125 - . gene_id 1 ; sequence CbirOr26 ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 78 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 78 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 78 212 125 - . alignment_id 1 ; Query CbirOr26 ; Align 213 338 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 332 -> 375 Target range: 212 -> 83 333 : GluGlnCysLysArgValGlyGluIleAlaTyrMetThrAsnTrpTyrLysLeuHisHisLysT : 354 |||:!! !! !:!||||||! !! !!.!|||||||||.!.||||||::!||| !!!.|||| GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 355 : hrAlaLeuAsnLeuValLeuIleIleAlaGlnSerAsnAsnValIleLysLeuThrAlaGlyLy : 375 ||||||||..!!!!|||:!!||||||:!!::!|||!:!! |||||||||:!!||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 376 : s : 375 | s 85 : A : 84 vulgar: CbirOr25 332 375 . LHQN01029187.1 212 83 - 124 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 84 212 124 - . gene_id 1 ; sequence CbirOr25 ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 84 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 84 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 84 212 124 - . alignment_id 1 ; Query CbirOr25 ; Align 213 333 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 339 -> 384 Target range: 212 -> 77 340 : GluGlnGlyGlyGlnIleGlyArgSerAlaTyrMetThrAsnTrpTyrLeuLeuProGlyAsnT : 361 |||:!! ! !:!!:!!||| !!!.!!.!|||||||||.!.||||||! !||| !! !!!.| GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 362 : hrAlaLeuGlyLeuThrMetIleIleLeuArgSerAsnValAlaLeuLysIleThrAlaGlyLy : 382 |||||||||||!!!..!|||||||||! !||||||!:!:!!!.!:!!||||||||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 383 : sPheVal : 384 ||||||| sPheVal 85 : ATTCGTA : 78 vulgar: CbirOr28 339 384 . LHQN01029187.1 212 77 - 127 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 78 212 127 - . gene_id 1 ; sequence CbirOr28 ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 78 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 78 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 78 212 127 - . alignment_id 1 ; Query CbirOr28 ; Align 213 340 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: LHQN01029187.1 Habropoda laboriosa contig29187, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 340 -> 385 Target range: 212 -> 77 341 : GluGluCysLeuGluIleGlyIleLysSerTyrMetIleAspTrpTyrArgLeuProGlyLysG : 362 |||||| ! !:!!:!!||| !||| !||||||! !!!:|||||||||||| !! !||| GluGluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysT 212 : GAAGAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAA : 149 363 : luGlyLeuGlyIleMetLeuMetMetGlnMetSerAsnAlaThrIleLysLeuThrAlaGlyLy : 383 !.!||||||.!!:!::!!!!:!!:...! |||!:! !..!||||||:!!||||||||||| hrAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLy 148 : CTGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAA : 86 384 : sPheMet : 385 ||||:!: sPheVal 85 : ATTCGTA : 78 vulgar: CbirOr27 340 385 . LHQN01029187.1 212 77 - 114 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01029187.1 exonerate:protein2genome:local gene 78 212 114 - . gene_id 1 ; sequence CbirOr27 ; gene_orientation . LHQN01029187.1 exonerate:protein2genome:local cds 78 212 . - . LHQN01029187.1 exonerate:protein2genome:local exon 78 212 . - . insertions 0 ; deletions 0 LHQN01029187.1 exonerate:protein2genome:local similarity 78 212 114 - . alignment_id 1 ; Query CbirOr27 ; Align 213 341 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr25 Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 333 -> 387 Target range: 112 -> 280 334 : GlnCysLysArgValGlyGluIleAlaTyrMetThrAsnTrpTyrLysLeuHisHisLysThrA : 355 :!! !! !:!||||||! !! !!.!|||||||||.!.||||||::!||| !!!.||||||| GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrA 113 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTG : 176 356 : laLeuAsnLeuValLeuIleIleAlaGlnSerAsnAsnValIleLysLeuThrAlaGlyLysLe : 376 |||||..!||||||:!!||||||:!!::!|||!:!! |||||||||:!!||||||||||||!! laLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPh 177 : CTCTCGGTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATT : 239 377 : uPhe<-><->GlnLeuSerMetThrThrPheGlyAspIle : 387 ! ! !! !|||:!:.!!||||||||||||:!: eValTyr***ThrSerSerValAlaThrPheGlyAspVal 240 : CGTATACTGAACATCGTCTGTCGCAACATTTGGCGATGTG : 280 vulgar: CbirOr25 333 387 . LHQN01048470.1 112 280 + 124 M 44 132 G 0 6 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 113 280 124 + . gene_id 1 ; sequence CbirOr25 ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 113 280 . + . LHQN01048470.1 exonerate:protein2genome:local exon 113 280 . + . insertions 6 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 113 280 124 + . alignment_id 1 ; Query CbirOr25 ; Align 113 334 132 ; Align 251 378 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr24PSE Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 325 -> 379 Target range: 112 -> 280 326 : GlnSerLysAsnIleGluAsnMetValTyrMetThrAspTrpTyrUnkLeuProHisLysThrA : 347 :!!!!!! !!.:!!! !...! ||||||||||||!!:|||||| ||| !!!!.||||||| GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrA 113 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTG : 176 348 : laLeuCysPheIleLeuIleIleMetArgSerAsnTyrThrIleLysMetThrAlaGlyAsnLe : 368 ||||| !!!!.:!!:!!|||||| ||||||!:! ..!||||||!!:|||||||||!!.!! laLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPh 177 : CTCTCGGTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATT : 239 369 : uValTyr<-><->LeuLeuIleAlaThrPheGlyAspMet : 379 !|||||| ! !! !:!!|||||||||||||||:!! eValTyr***ThrSerSerValAlaThrPheGlyAspVal 240 : CGTATACTGAACATCGTCTGTCGCAACATTTGGCGATGTG : 280 vulgar: CbirOr24PSE 325 379 . LHQN01048470.1 112 280 + 118 M 45 135 G 0 6 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 113 280 118 + . gene_id 1 ; sequence CbirOr24PSE ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 113 280 . + . LHQN01048470.1 exonerate:protein2genome:local exon 113 280 . + . insertions 6 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 113 280 118 + . alignment_id 1 ; Query CbirOr24PSE ; Align 113 326 135 ; Align 254 371 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr26 Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 341 -> 392 Target range: 121 -> 280 342 : GlnIleGlyAspThrAlaTyrMetThrAsnTrpTyrLeuLeuArgArgAsnAsnAlaValGlyP : 363 :!!:!!|||! ! !!.!|||||||||.!.||||||! !||| !!:!!!.!.!|||:!!|||! LysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGlyL 122 : AAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGGTT : 185 364 : heValLeuIleIleLeuLysSerAsnValValValLysIleThrAlaGlyLysMetIle<-><- : 383 !.|||:!!||||||! !!:!|||!:!:!!|||:!!||||||||||||||||||.!.:!! euValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheValTyr** 186 : TGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTATACTG : 248 384 : >GluLeuSerLeuSerThrPheGlyAspVal : 392 !! !|||:!!:!!||||||||||||||| *ThrSerSerValAlaThrPheGlyAspVal 249 : AACATCGTCTGTCGCAACATTTGGCGATGTG : 280 vulgar: CbirOr26 341 392 . LHQN01048470.1 121 280 + 119 M 41 123 G 0 6 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 122 280 119 + . gene_id 1 ; sequence CbirOr26 ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 122 280 . + . LHQN01048470.1 exonerate:protein2genome:local exon 122 280 . + . insertions 6 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 122 280 119 + . alignment_id 1 ; Query CbirOr26 ; Align 122 342 123 ; Align 251 383 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr28 Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 343 -> 384 Target range: 121 -> 244 344 : GlnIleGlyArgSerAlaTyrMetThrAsnTrpTyrLeuLeuProGlyAsnThrAlaLeuGlyL : 365 :!!:!!||| !!!.!!.!|||||||||.!.||||||! !||| !! !!!.||||||||||||| LysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrAlaLeuGlyL 122 : AAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTGCTCTCGGTT : 185 366 : euThrMetIleIleLeuArgSerAsnValAlaLeuLysIleThrAlaGlyLysPheVal : 384 ||..!|||||||||! !||||||!:!:!!!.!:!!|||||||||||||||||||||||| euValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheVal 186 : TGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCGTA : 244 vulgar: CbirOr28 343 384 . LHQN01048470.1 121 244 + 128 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 122 244 128 + . gene_id 1 ; sequence CbirOr28 ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 122 244 . + . LHQN01048470.1 exonerate:protein2genome:local exon 122 244 . + . insertions 0 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 122 244 128 + . alignment_id 1 ; Query CbirOr28 ; Align 122 344 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr27 Target: LHQN01048470.1 Habropoda laboriosa contig48470, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 341 -> 385 Target range: 112 -> 244 342 : GluCysLeuGluIleGlyIleLysSerTyrMetIleAspTrpTyrArgLeuProGlyLysGluG : 363 ||| ! !:!!:!!||| !||| !||||||! !!!:|||||||||||| !! !||| ! GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysThrA 113 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAACTG : 176 364 : lyLeuGlyIleMetLeuMetMetGlnMetSerAsnAlaThrIleLysLeuThrAlaGlyLysPh : 384 .!||||||:!::!::!!!!:!!:...! |||!:! !..!||||||:!!|||||||||||||| laLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPh 177 : CTCTCGGTTTGGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAAAATT : 239 385 : eMet : 385 |:!: eVal 240 : CGTA : 244 vulgar: CbirOr27 341 385 . LHQN01048470.1 112 244 + 111 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01048470.1 exonerate:protein2genome:local gene 113 244 111 + . gene_id 1 ; sequence CbirOr27 ; gene_orientation . LHQN01048470.1 exonerate:protein2genome:local cds 113 244 . + . LHQN01048470.1 exonerate:protein2genome:local exon 113 244 . + . insertions 0 ; deletions 0 LHQN01048470.1 exonerate:protein2genome:local similarity 113 244 111 + . alignment_id 1 ; Query CbirOr27 ; Align 113 342 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr52 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 310 -> 381 Target range: 204712 -> 204925 311 : AlaThrPheValIleMetGlnLeuTyrLeuTyrCysHisSerAlaGluLysLeuLeuT : 330 ::: |||:::...... ||||||! !! ::: ...||| !! SerAspPheLeuPhePheProLeuTyrTyrLeuSerSerPheSerIleSerLeuSerI 204713 : tcagattttcttttctttcctctatACTACTTgtcttcattttcaatttctttgtCGA : 204770 331 : hrGluSerValGlyMetAlaTyrGlyAlaTyrGluCysLysTrpTyrGluLeuSerPr : 349 !:!!|||! !! !:!: ! !!.!||||||||||||:!!|||! .!.|||!.! ! leLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSe 204771 : TAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATC : 204827 350 : oAsnAspAlaLysAsnLeuMetPheIleValTyrArgSerLysIleProLeuGlnLeu : 368 !||| ! ||||||!:!|||!!:!!.|||:!! |||:!!:!!! |||||| ||| rAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeu 204828 : GAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTA : 204884 369 : ThrAlaGlyLysPheGlyThrPheSerMetGluMetPhe : 381 ||||||||||||... ...!!!||| !! !||| ThrAlaGlyLysLeuPheProMetThrMetLeuThrPhe 204885 : ACCGcaggaaaattatttcctatGACGATGCTAACGTTT : 204925 vulgar: CbirOr52 310 381 . KQ414617.1 204712 204925 + 111 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204713 204925 111 + . gene_id 1 ; sequence CbirOr52 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204713 204925 . + . KQ414617.1 exonerate:protein2genome:local exon 204713 204925 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204713 204925 111 + . alignment_id 1 ; Query CbirOr52 ; Align 204713 311 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr54NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 323 -> 382 Target range: 204763 -> 204940 324 : LeuLeuValGlnSerThrGlyMetGlyPheSerAlaTyrGluSerAsnTrpPheAsnI : 343 ||| !:!!:!!||| !! !:!: ! !!:!!|||||||||!!!.!.|||!!.|||: LeuSerIleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnL 204764 : ttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATT : 204821 344 : leProGlyLysGluAlaArgAsnLeuLeuPheIleMetHisArgSerThrIleProLe : 362 !: !..!!!.:!!|||!:!!:!|||:!!!!.|||||| |||:!! !! ||||| euLysSerAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLe 204822 : TGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCT : 204878 363 : uCysLeuThrAlaGlyLysPheGlyThrPheSerLeuGlnMetPheSerThrIleVal : 381 |||||||||||||||||||... ...!!!:!!! !! !|||!!!!.!:!!..! uCysLeuThrAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsnValThr 204879 : CTGTTTAACCGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTCACT : 204935 382 : Arg : 382 !:! Gln 204936 : CAG : 204940 vulgar: CbirOr54NTE 323 382 . KQ414617.1 204763 204940 + 110 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204764 204940 110 + . gene_id 1 ; sequence CbirOr54NTE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204764 204940 . + . KQ414617.1 exonerate:protein2genome:local exon 204764 204940 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204764 204940 110 + . alignment_id 1 ; Query CbirOr54NTE ; Align 204764 324 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr53PN(F) Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 96 -> 228 Target range: 203813 -> 204218 97 : AlaLeuThrThrLeuValGlyGlnMetLeuAsnAspTrpThrGlnProValProGluP : 116 !.!||| ! !!||||||..!..!!!: !.!.||||||.!!:!! ! ! !!!!: ValLeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspP 203814 : GTTCTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATT : 203871 117 : roAsnArgArgLeuMetLeuArgAsnAlaArgLeuSerArgHisValSerLeuValCy : 135 !.!.||| !:!!|||:!!!:!....!!|||:!!!!!||| ..!|||:!!:!! ! heGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSe 203872 : TCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAG : 203928 136 : sSerValLeuThrTyrIleMetValSerSerPheIleValLeuGlnIleTrpAlaAsn : 154 !! !!.!|||! !!:!! ! |||! !! !.!.|||||||||! !! ! !.!! ! rTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIle 203929 : TTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATT : 203985 155 : AlaGlnAsn<-><->AlaAlaGluThrAspLeuGlyGlyLeuIleHis<->ProAlaT : 171 .!! !.. .!! !||||||:!!:!! ! !|||.!!! |||... ThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrT 203986 : ACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaactt : 204045 172 : hrSerProTyrAspThrGlnLysSerProAsnTyrGlnIleThrTrpLeuGlyGlnPh : 190 |||||| ...:!!!!!||| !!!:!:!!|||! !!::||| !|||.! yrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMe 204046 : attatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAAT : 204102 191 : eIleGlyThrValLeuThrAlaIleCysTyrSerCysPheAspThrPheLeuAlaVal : 209 . ! ! !||||||! !|||:!!||||||! ! !! !!|||!.!|||!!!!.!:!! tAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIle 204103 : GGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATA : 204159 210 : LeuValLeuHisLeuCysGlyGlnLeuThrMetLeuLysThrArgLeuArgAsnLeu : 228 |||:!!||||||:!!|||||||||||| !! |||:::||||||||| !|||:!! LeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIle 204160 : TTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATA : 204218 vulgar: CbirOr53PN(F) 96 228 . KQ414617.1 203813 204218 + 155 M 61 183 G 0 6 M 11 33 G 0 3 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203814 204218 155 + . gene_id 1 ; sequence CbirOr53PN(F) ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203814 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 203814 204218 . + . insertions 9 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203814 204218 155 + . alignment_id 1 ; Query CbirOr53PN(F) ; Align 203814 97 183 ; Align 204003 158 33 ; Align 204039 169 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr55 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 162 -> 221 Target range: 204044 -> 204221 163 : TyrPheProTyrAsnAlaThrValSerProLeuTyrGluPheThrPheValGlyGlnI : 182 |||::: |||::: :!!! !!!!|||! !!:!|||.!.! !|||:!! !|||! TyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnM 204045 : tattatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAA : 204102 183 : leLeuGlyAlaThrTyrAlaAlaIleThrTyrThrThrValAspThrPheIleAlaTh : 201 !: ! ! !..!! !|||:!! !|||! ! !||||||!.!|||.!!!.!! etAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIl 204103 : TGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAAT : 204159 202 : rLeuValLeuHisThrCysGlyGlnLeuSerAsnLeuArgArgGluLeuThrAspLeu : 220 !|||:!!||||||! !||||||||||||..!|||||||||! !..!|||.!!:!!:!! eLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIle 204160 : ATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATA : 204216 221 : Arg : 221 !:! Lys 204217 : AAA : 204221 vulgar: CbirOr55 162 221 . KQ414617.1 204044 204221 + 119 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204045 204221 119 + . gene_id 1 ; sequence CbirOr55 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204045 204221 . + . KQ414617.1 exonerate:protein2genome:local exon 204045 204221 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204045 204221 119 + . alignment_id 1 ; Query CbirOr55 ; Align 204045 163 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr42PSE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 227 -> 303 Target range: 1394164 -> 1394392 228 : MetHisLeuCysGlyGlnLeuGluLeuLeuLysAlaArgPheValGluLeuGlyAr : 246 .!.|||:!! ! ||||||:!!|||:!!|||:!! ! !.........:::... PheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAsnIleSerIl 1394165 : TTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaatatttctat : 1394219 247 : gLysIleGluLysLysAsnHisCysArgAsnValLeuGlyProTrpIleArgArgH : 265 ||| !|||||| ! !.. ! ||||||..! ! ! !!! |||!.!|||| eLysAspGluLysHisArgLeuSerArgAsnThrThrLysSerLeuIleHisArgH 1394220 : taaagATGAGAAACACAGATTATCGAGAAACACCACCAAATCATTAATTCACAGAC : 1394276 266 : isTyrGlnLeuIleIleLeuAlaArgAsnIleGluAspAlaPheAsnIleAsnIle : 283 ||:!!!:!:!!|||||| !:!! !::!||||||..! !|||::: !! ! ! isHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIleAla 1394277 : ATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACATTGCT : 1394330 284 : LeuIleArgLeuSerIleThrThrIleValIleAlaIleSerGlyMetHisIleIl : 302 |||!!:!:!! !! ! !!.!|||:!!||||||..! !! !|||.!. |||:! LeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGlyPheLeuIleVa 1394331 : TTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGATTCTTAATAGT : 1394387 303 : eMet : 303 !!!: lIle 1394388 : AATT : 1394392 vulgar: CbirOr42PSE 227 303 . KQ414716.1 1394164 1394392 + 102 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394165 1394392 102 + . gene_id 1 ; sequence CbirOr42PSE ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1394165 1394392 . + . KQ414716.1 exonerate:protein2genome:local exon 1394165 1394392 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394165 1394392 102 + . alignment_id 1 ; Query CbirOr42PSE ; Align 1394165 228 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr48INT Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 298 -> 364 Target range: 1387622 -> 1387955 299 : GluGluValAlaHisSerIleTyrCysCysAsnTrpGlnCysLeuSerValLysPh : 317 |||...:!!.!!!!.|||:::||| ||| ! !|||!.! !::! GluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProArgGl 1387623 : gAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCGAGA : 1387677 318 : eMetLysAsnValLeuPheValIleMetArgSerGlnGlnProValGlnLeuAlaA : 336 ::: ||||||...:::|||:::|||||||||:!! !:!! !|||.!!| uAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuThrA 1387678 : AGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCACTG : 1387734 337 : laGlyLysPheIleValValAsnIleGluThrTyrMetThr >>>> Target I : 350 |||||||||||:!: !:!!::!:!:! .!!!:! !.. 135 laGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387735 : CGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt............. : 1387778 351 : ntron 1 >>>> IleLeuLysThrSerLeuSerTyrLeuSerValLeuArgVal : 363 bp :::||||||.!!||| !||||||:!!|||||||||!.!!.! ++MetLeuLysAlaSerAlaSerTyrValSerValLeuHisAla 1387779 : ............agatgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTTGCATGCA : 1387950 364 : Met : 364 ||| Met 1387951 : ATG : 1387955 vulgar: CbirOr48INT 298 364 . KQ414716.1 1387622 1387955 + 105 M 51 153 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387623 1387955 105 + . gene_id 1 ; sequence CbirOr48INT ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387623 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387623 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387623 1387955 105 + . alignment_id 1 ; Query CbirOr48INT ; Align 1387623 299 153 ; Align 1387911 350 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr46 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 161 -> 255 Target range: 1344660 -> 1344942 162 : GluGluAlaValLeuGluTyrProIleProSerArgCysAlaLeuGlnTyrLeuAs : 180 ....!...!..!||| ||| !:!!|||! !!:! !! !! !||| ! SerAsnCysThrLeuProTyrGluLeuProMetLysValAsnHisLeuTyrGluVa 1344661 : AGTAACTGTACTCTTCCTTACGAGCTACCAATGAAAGTGAACCACCTGTACGAAGT : 1344715 181 : nAlaProMetSerMetTyrGlnIleTyrCysPheIleGluPheIleValLeuLeuI : 199 .!! !:!! !!! !||| :!:!:!||| !! ! ! ..! !:!!: lThrGluValArgThrTyrAlaLeuPheCysValTyrPheValProThrSerMetL 1344716 : GACAGAGGTGCGGACGTACGCTTTGTTCTGCGTTTACTTCGTACCGACGAGCATGT : 1344772 200 : leThrCysThrCysAsnHisGlyAsnAspSerLeuPheLeuAsnIleThrLeuHis : 217 !! ! ! ! !! !||| !|||||||||.!.:!!!.!:!:|||!!!||| euLeuThrIleGlyAlaThrGlyAlaAspSerLeuLeuValThrLeuThrPheHis 1344773 : TACTAACAATCGGTGCAACTGGCGCCGACAGTCTTCTAGTCACCTTGACTTTCCAT : 1344826 218 : ValCysGlyGlnValLysIleLeuLysAlaAsnPheMetAspPheThrValThrAs : 236 :!!|||.!!||| !!..!||||||...:::... :!!.!! !||| ! LeuCysSerGlnPheSerIleLeuSerSerArgValLysAsnIleAspValGluPr 1344827 : CTTTGCAGTCAATTTTCGATcctgtcgagccgtgtaaaaAATATCGACGTCGAGCC : 1344883 237 : nLeuGlnValTyrAspHisPheAsnAlaLeuIleGlnArgHisAsnTyrLeuIleG : 255 ! !:!! !!:! !!..!.!!.||||||:!!:!!||||||!.! ! |||:!!! oGlnLysTyrPheProGlnMetLysAlaLeuValGluArgHisThrGluLeuLeuA 1344884 : GCAAAAGTATTTCCCACAAATGAAAGCACTCGTTGAACGGCACACCGAACTTCTAC : 1344940 256 : ln : 255 :! rg 1344941 : GG : 1344942 vulgar: CbirOr46 161 255 . KQ414782.1 1344660 1344942 + 100 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1344661 1344942 100 + . gene_id 1 ; sequence CbirOr46 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1344661 1344942 . + . KQ414782.1 exonerate:protein2genome:local exon 1344661 1344942 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1344661 1344942 100 + . alignment_id 1 ; Query CbirOr46 ; Align 1344661 162 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr53PN(F) Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 330 -> 383 Target range: 1345564 -> 1345723 331 : SerThrGlyLeuAlaGlnSerAlaTyrAspCysGluTrpTyrGluLeuProSerLy : 349 |||:!!! !:!! !|||:!!..!||| ! !!.!.||||||!!:||||||..!|| SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 350 : sLysAlaIleCysLeuIleIleIleIleIleArgAlaAsnValSerPheLysIleT : 368 | ! .!! !! ||||||.!! !||| !|||:!!.!. ! !!! ! :!!| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 369 : hrAlaGlyLysPheSerSerPheSerLeuGluLeuPheGlyThrIle : 383 ||||||||||||||! ! !|||||||||||| !||||||! !:!: hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIleVal 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCGTG : 1345723 vulgar: CbirOr53PN(F) 330 383 . KQ414782.1 1345564 1345723 + 108 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345723 108 + . gene_id 1 ; sequence CbirOr53PN(F) ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345723 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345723 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345723 108 + . alignment_id 1 ; Query CbirOr53PN(F) ; Align 1345565 331 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr48INT Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 298 -> 365 Target range: 1345567 -> 1345846 299 : GluGluValAlaHisSerIleTyrCysCysAsnTrpGlnCysLeuSerValLysPh : 317 ...|||:!! !!!.:!! !|||! ! !!|||||| ! !||| !!! !|||!: SerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLysTy 1345568 : TCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAAATA : 1345622 318 : eMetLysAsnValLeuPheValIleMetArgSerGlnGlnProValGlnLeuAlaA : 336 !! !::!::::!!:!!||| !||| |||||||||:!!||| ! ! |||.!!| rThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuThrA 1345623 : CACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAG : 1345679 337 : laGlyLysPheIleValValAsnIleGluThrTyrMetThr >>>> Target I : 350 ||||||||||| !||| !!::::!!||||||!:! ! ! 78 laGlyLysPheTyrValPheSerLeuGluThrPheGlyIle++ 1345680 : CTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCgt............. : 1345723 351 : ntron 1 >>>> IleLeuLysThrSerLeuSerTyrLeuSerValLeuArgVal : 363 bp |||:!!|||.!!|||:!!:!!|||||||||||||||!:! ! ++IleValLysAlaSerMetAlaTyrLeuSerValLeuLysSer 1345724 : ............agATAGTAAAAGCGTCGATGGCCTATCTTTCCGTTCTGAAAAGC : 1345838 364 : MetLeu : 365 !!::!! IleIle 1345839 : ATTATC : 1345846 vulgar: CbirOr48INT 298 365 . KQ414782.1 1345567 1345846 + 134 M 51 153 5 0 2 I 0 74 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345568 1345846 134 + . gene_id 1 ; sequence CbirOr48INT ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345568 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345568 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345846 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345846 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345568 1345846 134 + . alignment_id 1 ; Query CbirOr48INT ; Align 1345568 299 153 ; Align 1345799 350 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr54NTE Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 327 -> 380 Target range: 1345564 -> 1345723 328 : SerThrGlyMetGlyPheSerAlaTyrGluSerAsnTrpPheAsnIleProGlyLy : 346 |||:!!! !||| ! :!!..!||| |||||||||!:!:!!:!!|||! !|| SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 347 : sGluAlaArgAsnLeuLeuPheIleMetHisArgSerThrIleProLeuCysLeuT : 365 | ! .!!|||:::|||:!!||| !!!: !|||||| !! |||! !! !|||| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 366 : hrAlaGlyLysPheGlyThrPheSerLeuGlnMetPheSerThrIle : 380 |||||||||||||| !..!|||||||||:!!! |||.!!! !:!: hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIleVal 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCGTG : 1345723 vulgar: CbirOr54NTE 327 380 . KQ414782.1 1345564 1345723 + 118 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345723 118 + . gene_id 1 ; sequence CbirOr54NTE ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345723 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345723 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345723 118 + . alignment_id 1 ; Query CbirOr54NTE ; Align 1345565 328 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr55 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 740 Query range: 5 -> 245 Target range: 44104 -> 45138 6 : AspLeuGluTyrGlyTyrGlyTrpAsnArgTyrThrMetThrPheMetGlyLeuTrpPro : 25 ||||||:!!|||! !||||||||||||!.!|||||||||! !|||||||||:!!|||||| AspLeuLysTyrValTyrGlyTrpAsnHisTyrThrMetArgPheMetGlyIleTrpPro 44105 : GATTTGAAGTATGTGTACGGTTGGAACCATTACACCATGAGGTTCATGGGAATCTGGCCa : 44162 26 : GluAsnArgAsnLeuGlyArgIleSerSerTyrArgAlaMetValProIleLeuMetMet : 45 |||...|||... ..!!:! !|||||||||! !|||:!::!!|||:!!||||||||| GluGluArgLysTrpAsnGlnProSerSerTyrLeuAlaLeuIleProValLeuMetMet 44163 : gaggaaagaaaatggaaCCAACCATCGAGTTACCTAGCTCTAATACCAGTTCTCATGATG : 44222 46 : LeuCysPheValCysAlaProGlnSerAlaAsnLeuProPheIleTrpGlyAspPheAsp : 65 !!! !|||||||||!.!||||||!!! !|||||| !!||||||||||||||||||:!! PheLeuPheValCysValProGlnThrIleAsnLeuSerPheIleTrpGlyAspPheAsn 44223 : TTTCTCTTCGTTTGTGTCCCACAAACGATCAATCTTTCATTCATCTGGGGTGATTTTAAT : 44282 66 : LeuValIleGluAsnLeuSerMetGlyAsnIleThrIleThrIleSerMetLeuLysThr : 85 ||||||:!!|||||||||||||||||||||||||||||||||||||||:!:||||||||| LeuValValGluAsnLeuSerMetGlyAsnIleThrIleThrIleSerLeuLeuLysThr 44283 : TTAGTGGTAGAGAATCTATCCATGGGTAACATAACAATCACTATTTCCCTTCTGAAGACC : 44342 86 : ValValPheTrpSerAsnSerArg{H} >>>> Target Intron 1 >>>> {is} : 94 :!!!.!||||||! !|||.!!!:!{!} 314 bp { } IleAlaPheTrpIleAsnGlyLys{P}++ ++{ro} 44343 : ATCGCTTTTTGGATCAACGGCAAA{C}gt.........................ag{CA} : 44684 95 : LeuLysAlaLeuValThrCysMetThrLysAspTrpAsnLeuThrValAspLysArgAsp : 114 ||||||:!!|||:!!! !||||||.!! ! ||||||!:! !..! ! ! ||| !||| LeuLysSerLeuLeuLysCysMetAlaAspAspTrpSerThrValSerLysLysAspAsp 44685 : CTGAAATCTCTGCTGAAATGCATGGCCGACGATTGGAGCACAGTATCGAAAAAAGATGAT : 44743 115 : ArgLysThrMetLeuAspValAlaArgIleThrArgSerLeuSerIleTyrSerThrLeu : 134 ! ! ! |||||| !:!!:!!|||||||||||||||!.! !! !||| !||||||:!! LeuAspThrMetSerAsnIleAlaArgIleThrArgLysThrIleIleSerSerThrVal 44744 : CTAGACACCATGAGTAACATCGCAAGGATCACCAGAAAGACTATAATAAGCAGCACAGTG : 44803 135 : LeuCysGlnThrValLeuValThrTyrValAlaMetArgCysTyrMetIleArgGlnIle : 154 ||||||!!.! !|||:!!:!!||||||:!! !:!:|||! ! !! ! !:! ! ! ! LeuCysHisIleValValIleThrTyrIlePheLeuArgPheLeuThrArgLysTyrSer 44804 : TTATGTCACATTGTGGTCATCACTTATATATTTCTACGATTCCTCACCAGGAAGTACAGC : 44863 155 : GlyArgGlnMetPhePheArgGlyTyrPheProTyrAsnAlaThrValSerProLeuTyr : 174 |||! !::!:!:.!!||||||!.!||||||||||||:!!::! !||||||||| !||| GlyThrArgLeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyr 44864 : GGCACCAGACTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTAC : 44923 175 : GluPheThrPheValGlyGlnIleLeuGlyAlaThrTyrAlaAlaIleThrTyrThrThr : 194 ||||||||| ! :!!!.!||||||:!!!.!||| !|||||||||! !|||||||||.!! GluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAla 44924 : GAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCC : 44983 195 : ValAspThrPheIleAlaThrLeuValLeuHisThrCysGlyGlnLeuSerAsnLeuArg : 214 |||||||||||||||!.!! !|||:!!||||||..!|||||||||||||||||||||||| ValAspThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArg 44984 : GTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGA : 45043 215 : ArgGluLeuThrAspLeuArgAlaGlyThrSerGluGluPheGlnAlaArgLeuGlyLys : 234 !.!|||!!! ! ! |||!:!||| !! !!.!! ! !!!.||||||!:!||||||||| AsnGluPheGlyLysLeuGlnAlaCysAspLysValThrLeuGlnAlaLysLeuGlyLys 45044 : AACGAATTCGGTAAGCTTCAAGCATGCGATAAAGTAACATTACAGGCGAAGTTGGGGAAA : 45103 235 : IleValIleArgHisGluTyrLeuAsnArgPhe : 245 |||||| !:!||||||||||||||||||||| IleValGlnLysHisGluTyrLeuAsnArgPhe 45104 : ATCGTGCAGAAACACGAATATCTTAACAGGTTC : 45138 vulgar: CbirOr55 5 245 . KQ414804.1 44104 45138 + 740 M 88 264 S 0 1 5 0 2 I 0 310 3 0 2 S 1 2 M 151 453 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44105 45138 740 + . gene_id 1 ; sequence CbirOr55 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 44105 44369 . + . KQ414804.1 exonerate:protein2genome:local exon 44105 44369 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 44370 44371 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 44370 44683 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 44682 44683 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 44684 45138 . + . KQ414804.1 exonerate:protein2genome:local exon 44684 45138 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44105 45138 740 + . alignment_id 1 ; Query CbirOr55 ; Align 44105 6 264 ; Align 44686 95 453 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr55 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 383 Query range: 233 -> 372 Target range: 51476 -> 52050 234 : LysIleValIleArgHisGluTyrLeuAsnArgPheAlaGluThrIleGluAspAsnPhe : 253 |||::::::||| ! ! ! ||||||||||||||||||||| ! !||| LysLeuLeuIleAlaSerTyrAlaCysLeuArgPheAlaGluThrIleGluArgCysPhe 51477 : aaattattaattgcatCGTATGCGTGTCTAAGGTTCGCAGAAACGATAGAGCGTTGTTTC : 51534 254 : AsnMetMetLeuLeuMetGlnMetLeuGlyCysSerValGlnLeuCysCysGlnCysLeu : 273 |||||||||||||||!!:|||||||||||||||!!!||||||||||||! !||||||!!! AsnMetMetLeuLeuIleGlnMetLeuGlyCysThrValGlnLeuCysPheGlnCysPhe 51535 : AATATGATGCTTCTGATTCAGATGCTCGGTTGTACCGTTCAGCTATGCTTCCAGTGTTTC : 51594 274 : GlnAlaPheMet >>>> Target Intron 1 >>>> SerValValSerGlyGluI : 284 |||||| !!||| 100 bp ||| :!!..!! !|||| GlnAlaValMet++ ++Ser---IleAspGluGluI 51595 : CAAGCAGTCATGgt.........................agTCA---ATTGACGAGGAAA : 51724 285 : leAsnGluPhePheIlePheGlnPheIlePheLeuValProTyrValIleTyrValLeuL : 304 ||:!!||| !...|||||||||...:::||||||:!! !||||||:!!||||||:!!| leAspGluAsnMetIlePheGlnIleLeuPheLeuLeuPheTyrValValTyrValMetL 51725 : TAGATGAAAACAtgattttccaaattctctTTTTGCTGTTCTACGTGGTTTACGTGATGC : 51784 305 : euGlnLeuTyrLeuTyrCysTyrIleGlyGluArgLeuLeuValGlu >>>> Target : 320 ||||||||!:!||||||||||||:!:||||||||||||! !|||||| 6 euGlnLeuPheLeuTyrCysTyrValGlyGluArgLeuSerValGlu++ 51785 : TACAATTATTCTTGTATTGTTACGTGGGTGAAAGGCTTTCCGTTGAGgt........... : 51834 321 : Intron 2 >>>> SerThrGlnIleAlaTyrAlaAlaTyrAspCysSerTrpTyrAs : 334 0 bp |||..!:!!|||||| !!||||||||||||! !..!||||||:! ++SerValGluIleAlaAsnAlaAlaTyrAspSerGluTrpTyrAs 51835 : ..............agAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAATGGTACAA : 51934 335 : pLeuSerAlaTyrGluValArgSerLeuIleIleIleIleTyrArgAlaArgSerProLe : 354 !|||||| !! ! .!.!.!!:!! !|||:!!||||||!!: |||||||||! !||||| nLeuSerProLysAsnAlaLysLeuLeuLeuIleIleMetArgArgAlaArgLeuProLe 51935 : TTTGTCTCCGAAAAATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGTTACCTCT : 51994 355 : uThrIleThrAlaGlyArgPheCysSerPheAsnArgGluLeuPheSerGluVal : 372 | !||||||||||||||||||..!!!!|||!.!! ! !|||!:!|||:!!||| uGlnIleThrAlaGlyArgPheAlaThrPheThrLeuMetLeuTyrSerGlnVal 51995 : ACAAATCACTGCAGGTAGATTTGCTACTTTCACTCTGATGCTGTATTCACAGGTa : 52050 vulgar: CbirOr55 233 372 . KQ414804.1 51476 52050 + 383 M 44 132 5 0 2 I 0 96 3 0 2 M 1 3 G 1 0 M 40 120 5 0 2 I 0 56 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51477 52050 383 + . gene_id 2 ; sequence CbirOr55 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51477 51608 . + . KQ414804.1 exonerate:protein2genome:local exon 51477 51608 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51609 51610 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51609 51708 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51707 51708 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 51709 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51709 51831 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 1 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52050 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52050 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51477 52050 383 + . alignment_id 2 ; Query CbirOr55 ; Align 51477 234 132 ; Align 51709 278 3 ; Align 51712 280 120 ; Align 51892 320 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr55 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 4 -> 89 Target range: 30782 -> 31040 5 : AlaAspLeuGluTyrGlyTyrGlyTrpAsnArgTyrThrMetThrPheMetGlyLeuTrp : 24 :!!! !|||:!! !.! !||||||||||||!::!.!||| !.!.:!:|||:!!||| SerGlyLeuLysValAlaLeuGlyTrpAsnArgTrpAsnMetGluLeuValGlyIleTrp 30783 : TCAGGTTTGAAGGTAGCACTTGGATGGAACCGTTGGAACATGGAACTGGTTGGAATTTGG : 30840 25 : ProGlu<->AsnArgAsnLeuGlyArgIleSerSerTyrArgAlaMetValProIleLeu : 43 |||||| !:!|||::! ! !||| !!!:!!:!!:!|||:!!:!! !|||!!! ProGluProSerArgSerAspGlnArgTrpProAsnPheLysAlaLeuLeuPheIlePhe 30841 : CCAGAACCGAGCAGATCTGATCAACGATGGCCGAATTTCAAGGCTTTGCTGTTCATTTTT : 30900 44 : MetMetLeuCysPheValCysAlaProGlnSerAlaAsnLeuProPheIleTrpGlyAsp : 63 ::::::::: ||| !!.!|||||||||!.!||||||! !||||||||||||||| ValIleIlePhePheGlyThrGlyProGlnSerValAsnLeuLeuPheIleTrpGlyAsp 30901 : GtgataatattttttggaaCCGGACCTCAGAGCGTGAATCTACTTTTCATATGGGGAGAC : 30960 64 : PheAspLeuValIleGluAsnLeuSerMetGlyAsnIleThrIleThrIleSerMetLeu : 83 .!!! ||||||! ||||||||||||! !!.!|||||| !! !! !! !:!!|||:!! LeuGlyLeuValThrGluAsnLeuSerThrAlaAsnIleProGlyIleAsnAlaMetMet 30961 : CTTGGATTGGTCACGGAAAATCTGTCCACGGCTAATATTCCCGGCATAAACGCCATGATG : 31020 84 : LysThrValValPheTrp : 89 ||| !:!!:!! !||| LysLeuIleIleAlaTrp 31021 : AAACTGATTATCGCCTGG : 31040 vulgar: CbirOr55 4 89 . KQ414804.1 30782 31040 + 178 M 22 66 G 0 3 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 30783 31040 178 + . gene_id 3 ; sequence CbirOr55 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 30783 31040 . + . KQ414804.1 exonerate:protein2genome:local exon 30783 31040 . + . insertions 3 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 30783 31040 178 + . alignment_id 3 ; Query CbirOr55 ; Align 30783 5 66 ; Align 30852 27 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr55 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 243 -> 321 Target range: 33631 -> 33936 244 : ArgPheAlaGluThrIleGluAspAsnPheAsnMetMetLeuLeuMetGlnMetLeuGly : 263 ||||||||| ! !||||||||| !||||||! :!!||||||!!:||||||||| ! ArgPheAlaThrMetIleGluAspCysPheAsnThrLeuLeuLeuIleGlnMetLeuLeu 33632 : aGGTTCGCAACTATGATCGAGGATTGTTTCAACACATTGCTATTAATTCAGATGCTGCTC : 33689 264 : CysSerValGlnLeuCysCysGlnCysLeuGlnAlaPheMet >>>> Target Intr : 278 |||!!!|||:!!:!!|||! !||| !!!!! ! !||| 74 bp CysThrValGluIleCysPheGlnGlyPheLeuPhePheAsp++ 33690 : TGTACCGTCGAAATATGCTTTCAAGGCTTTTTATTCTTCGATgt................ : 33736 279 : on 1 >>>> SerValValSerGlyGluIleAsnGluPhePheIlePheGlnPheIleP : 294 !:!!:!!..!..!||| !!.! !.!.|||! ! ! |||!!.:!!| ++ValIleLeuGluAsnGlu---LysGlyIlePheAsnValGlnLeuLeuP 33737 : .........agGTGATACTAGAAAACGAG---AAAGGAATATTCAACGTGCAATTGCTTT : 33853 295 : heLeuValProTyrValIleTyrValLeuLeuGlnLeuTyrLeuTyrCysTyrIleGlyG : 314 ||!!!|||! !!:!||| !!:!:!!|||:!!!!.:!!|||:!!|||||||||||||||| hePheValLeuPheValCysPheIleLeuValHisIleTyrIleTyrCysTyrIleGlyG 33854 : TCTTCGTGCTGTTCGTATGCTTCATCCTTGTACACATCTACATTTATTGTTACATAGGAG : 33913 315 : luArgLeuLeuValGluSerThr : 321 ||! !||||||..!.!.:!!!:! luMetLeuLeuThrHisAlaSer 33914 : AGATGCTACTCACACATGCAAGT : 33936 vulgar: CbirOr55 243 321 . KQ414804.1 33631 33936 + 149 M 34 102 5 0 2 I 0 70 3 0 2 M 6 18 G 1 0 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33632 33936 149 + . gene_id 4 ; sequence CbirOr55 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33632 33733 . + . KQ414804.1 exonerate:protein2genome:local exon 33632 33733 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33734 33735 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 33734 33807 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 33806 33807 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 33808 33936 . + . KQ414804.1 exonerate:protein2genome:local exon 33808 33936 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 33632 33936 149 + . alignment_id 4 ; Query CbirOr55 ; Align 33632 244 102 ; Align 33808 278 18 ; Align 33826 285 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr55 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 155 -> 220 Target range: 31326 -> 31521 156 : ArgGlnMetPhePheArgGlyTyrPheProTyrAsnAlaThrValSerProLeuTyrGlu : 175 |||! !:!:.!.!:!! !||||||||||||!:!:!! ! ! !! ! !:!! ! ArgLeuLeuLeuTyrProGlyTyrPheProPheAspIleArgProIleGlyValLeuLeu 31327 : CGTCTGCTCCTGTACCCTGGCTATTTTCCCTTCGATATTCGTCCAATAGGGGTACTACTG : 31384 176 : PheThrPheValGlyGlnIleLeuGlyAlaThrTyrAlaAlaIleThrTyrThrThrVal : 195 ! ||| ! !!||||||:!:|||!.!||| !! !|||!.!|||!:!|||||||||||| SerThrAsnPheGlyGlnValLeuAlaAlaTyrSerAlaValIleSerTyrThrThrVal 31385 : TCGACCAATTTTGGCCAAGTGCTCGCAGCGTATTCCGCTGTTATCAGTTACACCACCGTG : 31444 196 : AspThrPheIleAlaThrLeuValLeuHisThrCysGlyGlnLeuSerAsnLeuArgArg : 215 |||||||||||||||! !|||:!!:!!|||! !|||||||||!!!..!! ||||||!:! AspThrPheIleAlaMetLeuIleMetHisIleCysGlyGlnPheGluIleLeuArgGln 31445 : GATACATTTATCGCGATGCTGATAATGCACATATGCGGACAATTTGAGATACTGAGACAG : 31504 216 : GluLeuThrAspLeu : 220 :!!||| ! ||| LysLeuArgArgLeu 31505 : AAATTACGAAGGCTG : 31521 vulgar: CbirOr55 155 220 . KQ414804.1 31326 31521 + 145 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31327 31521 145 + . gene_id 5 ; sequence CbirOr55 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31327 31521 . + . KQ414804.1 exonerate:protein2genome:local exon 31327 31521 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 31327 31521 145 + . alignment_id 5 ; Query CbirOr55 ; Align 31327 156 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr55 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 319 -> 372 Target range: 39965 -> 40124 320 : SerThrGlnIleAlaTyrAlaAlaTyrAspCysSerTrpTyrAspLeuSerAlaTyrGlu : 339 |||||| !|||!.! ! :!!||||||||||||!:!|||||||||||| !! !! ! .!. SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 340 : ValArgSerLeuIleIleIleIleTyrArgAlaArgSerProLeuThrIleThrAlaGly : 359 !.! !||||||:!!|||:!:|||! !||||||!:! ! !!!!! !|||||||||||| AlaValSerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGly 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGA : 40083 360 : ArgPheCysSerPheAsnArgGluLeuPheSerGluVal : 372 !:!||| !! !!|||::!! !|||||||||!:!! ||| LysPheSerProPheSerLeuGluLeuPheAsnAlaVal 40084 : AAATTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTGTG : 40124 vulgar: CbirOr55 319 372 . KQ414804.1 39965 40124 + 134 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40124 134 + . gene_id 6 ; sequence CbirOr55 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39966 40124 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40124 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39966 40124 134 + . alignment_id 6 ; Query CbirOr55 ; Align 39966 320 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr55 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 4 -> 87 Target range: 35900 -> 36158 5 : AlaAspLeuGluTyrGlyTyrGlyTrpAsnArgTyrThrMetThrPheMetGlyLeuTrp : 24 !.!!!::!!!!:!:!!.! ||||||||||||!:!!:!:!::!! ! :!:|||:!!||| ValGluMetAspPheAlaMetGlyTrpAsnArgPheSerLeuSerValLeuGlyValTrp 35901 : GTTGAAATGGATTTTGCTATGGGATGGAATCGTTTCAGTTTATCTGTACTTGGCGTGTGG : 35958 25 : ProGluAsnArgAsnLeuGlyArgIleSerSerTyrArgAla<-><-><-><->MetVal : 40 |||||| |||!!.:!!..!!.!:!:||| !!!:! !:!! ! !! ProGluProArgLysMetSerAsnLeuSerArgPheAlaSerAsnPheIlePheTrpPhe 35959 : CCAGAACCGAGAAAGATGTCTAACCTGTCACGATTCGCGTCTAACTTTATATTCTGGTTC : 36018 41 : ProIleLeuMetMetLeuCysPheValCysAlaProGlnSerAlaAsnLeuProPheIle : 60 !!! !|||!!:! !:!! !|||:!!||||||||||||! !.!!:!!||| !... ThrThrLeuIleThrValValPheIleCysAlaProGlnMetThrHisLeuValLeuLys 36019 : ACGACTTTGATAACGGTTGTCTTCATATGCGCTCCCCAAATGACGCATTTGGTAttaaaa : 36078 61 : TrpGlyAspPheAspLeuValIleGluAsnLeuSerMetGlyAsnIleThrIleThrIle : 80 :::...||| !||||||||||||||||||:!: |||||| !!!!: !.!! SerThrAsnLeuAspGluValIleGluAsnLeuSerVal---AsnIleProMetLeuPhe 36079 : tcgacgaatttgGACGAGGTGATAGAGAATCTGTCGGTC---AACATACCGATGCTCTTC : 36135 81 : SerMetLeuLysThrValVal : 87 |||:!! !||| !:!!:!! SerLeuGlyLysGlnIleIle 36136 : TCATTGGGCAAGCAAATCATT : 36158 vulgar: CbirOr55 4 87 . KQ414804.1 35900 36158 + 108 M 34 102 G 0 12 M 35 105 G 1 0 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 35901 36158 108 + . gene_id 7 ; sequence CbirOr55 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 35901 36158 . + . KQ414804.1 exonerate:protein2genome:local exon 35901 36158 . + . insertions 12 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 35901 36158 108 + . alignment_id 7 ; Query CbirOr55 ; Align 35901 5 102 ; Align 36015 39 105 ; Align 36120 75 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr54NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 540 Query range: 1 -> 252 Target range: 30788 -> 31608 2 : LeuAsnPheAlaIleGlyTrpAsnArgPheAsnLeuGlyLeuValGlyIleTrpProGly : 21 |||!!. ! |||:!!||||||||||||!::|||:!!! !||||||||||||||||||! ! LeuLysValAlaLeuGlyTrpAsnArgTrpAsnMetGluLeuValGlyIleTrpProGlu 30789 : TTGAAGGTAGCACTTGGATGGAACCGTTGGAACATGGAACTGGTTGGAATTTGGCCAGAA : 30846 22 : ProLeuGlnAsnIleLysTrpIleSerGlyLeuSerArgCysArgPheLeuIleAlaSer : 41 ||| !::!::! !:!! ! !!..!!!!!.! !! ! !|||:!! ProSerArgSerAspGlnArgTrpProAsnPheLysAlaLeuLeuPheIle--------- 30847 : CCGAGCAGATCTGATCAACGATGGCCGAATTTCAAGGCTTTGCTGTTCATT--------- : 30900 42 : PhePheMetLeuGlyPheMetCysIleProGlnSerThrAsnLeuIlePheIleTrpGly : 61 ||| :::::: ||| ! !|||||||||..!||||||:!!|||||||||||| PheValIleIlePhePheGlyThrGlyProGlnSerValAsnLeuLeuPheIleTrpGly 30901 : TTTGtgataatattttttggaaCCGGACCTCAGAGCGTGAATCTACTTTTCATATGGGGA : 30957 62 : AsnAlaAspMetMetThrGluAsnLeuAlaThrAlaAsnIleProValAlaAsnAlaPhe : 81 :!! !! :!!:!:||||||||||||:!!|||||||||||||||! ! !||||||.!. AspLeuGlyLeuValThrGluAsnLeuSerThrAlaAsnIleProGlyIleAsnAlaMet 30958 : GACCTTGGATTGGTCACGGAAAATCTGTCCACGGCTAATATTCCCGGCATAAACGCCATG : 31017 82 : MetLysAlaPheValIleTrpArgHisArgLys{A} >>>> Target Intron 1 > : 93 |||||| !.!!:!! !|||!.!|||||| ! {|} 67 bp MetLysLeuIleIleAlaTrpHisHisArgAsp{A}++ 31018 : ATGAAACTGATTATCGCCTGGCATCACAGAGAT{G}gt...................... : 31056 94 : >>> {la}LeuArgLeuLeuIleAspPhePheTyrGluAspTrpHisAlaProLysThr : 110 {||}.!!!:!! !:!!||| ! ! !||||||!!:|||||| ! .!! !!!:!||| ++{la}PheLysProValIleLysSerPheTyrAspAspTrpLysThrSerArgThr 31057 : ...ag{ct}tTCAAGCCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACc : 31171 111 : LeuGlnGluArgAlaThrMetLeuArgSerAlaLysLeuValArgLysIleSerIleTrp : 130 :::|||::: |||||||||!:!!!!||||||!!!!.!!:!:!!|||||||||||| LysGluGluLysGluThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIleTrp 31172 : aaggaggagaaggagacCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGG : 31231 131 : CysSerValLeuThrGlnThrMetValThrIleTyrIleValLeuArgLeuCysLeuIle : 150 ||||||||||||||| !||||||||||||:!!|||:!! !|||||| !!! :!!||| CysSerValLeuThrLeuThrMetValThrValTyrLeuSerLeuArgAlaTrpIleIle 31232 : TGCTCAGTATTAACCTTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATC : 31291 151 : <-><-><->AlaLysTrpLysSerAspLeuGluArgProLeuValTyrThrAlaTyrPhe : 167 ! !!:! !!...! ! ! !!!:|||! !|||:!!||| !!!.!|||||| TyrGlnLeuAspArgAlaAsnGlnLysGlnAspArgLeuLeuLeuTyrProGlyTyrPhe 31292 : TACCAGCTTGATAGGGCAAACCAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTATTTT : 31351 168 : ProPheAsnIleAsnArgSerProIlePheGluValIleCysValCysGlnIleIleSer : 187 ||||||:!!|||..!! !! ! !:!!.!. ! !! ! ! !! !!|||:!::!!:!! ProPheAspIleArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeuAla 31352 : CCCTTCGATATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCA : 31411 188 : AlaTyrSerAlaThrPheSerTyrThrGlySerAspSerPheIleSerMetLeuValLeu : 207 ||||||||||||..!.!!||||||||| ! !|||!!!||||||:!!||||||:!!:!! AlaTyrSerAlaValIleSerTyrThrThrValAspThrPheIleAlaMetLeuIleMet 31412 : GCGTATTCCGCTGTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATAATG : 31471 208 : HisThrCysGlyGlnPheGluAsnLeuHisAlaLysLeuLysAsnLeuAlaAspAspPro : 227 |||! !|||||||||||||||! |||... !||||||::!!..||| !|||||| ! HisIleCysGlyGlnPheGluIleLeuArgGlnLysLeuArgArgLeuMetAspAspGlu 31472 : CACATATGCGGACAATTTGAGATACTGAGACAGAAATTACGAAGGCTGATGGATGACGAG : 31531 228 : HisAspAlaLysThrValGluGluPheArgArgGluLeuThrTrpIleValLysArgHis : 247 ! ! .!!!:!!:!|||!!:|||.!!!:!!:!||||||..!! !|||:!!:!!|||||| LysLysThrArgSerValAspGluIleGlnLysGluLeuValLeuIleIleGluArgHis 31532 : AAGAAGACCAGAAGCGTGGATGAGATTCAGAAGGAGCTGGTTTTGATCATAGAGAGGCAT : 31591 248 : GluHisLeuAsnTrp : 252 ||||||||||||||| GluHisLeuAsnTrp 31592 : GAGCATCTAAATTgg : 31608 vulgar: CbirOr54NTE 1 252 . KQ414804.1 30788 31608 + 540 M 37 111 G 3 0 M 51 153 S 0 1 5 0 2 I 0 63 3 0 2 S 1 2 M 57 171 G 0 9 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 30789 31608 540 + . gene_id 1 ; sequence CbirOr54NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 30789 31053 . + . KQ414804.1 exonerate:protein2genome:local exon 30789 31053 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local splice5 31054 31055 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 31054 31120 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 31119 31120 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 31121 31608 . + . KQ414804.1 exonerate:protein2genome:local exon 31121 31608 . + . insertions 9 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 30789 31608 540 + . alignment_id 1 ; Query CbirOr54NTE ; Align 30789 2 111 ; Align 30900 42 153 ; Align 31123 94 171 ; Align 31303 151 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr54NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 390 Query range: 252 -> 395 Target range: 33634 -> 34671 253 : PheAlaLysThrIleGluAspThrPheAsnValValPheLeuIleGlnMetLeuSerCys : 272 ||||||! ! !||||||||| !||||||..!:!!.!.||||||||||||||| !||| PheAlaThrMetIleGluAspCysPheAsnThrLeuLeuLeuIleGlnMetLeuLeuCys 33635 : TTCGCAACTATGATCGAGGATTGTTTCAACACATTGCTATTAATTCAGATGCTGCTCTGT : 33692 273 : ThrIleGlnLeuCysPheGlnGlyPheGlnValPheArg >>>> Target Intron : 286 |||:!!:!!:!!||||||||||||||| ! !!||| ! 74 bp ThrValGluIleCysPheGlnGlyPheLeuPhePheAsp++ 33693 : ACCGTCGAAATATGCTTTCAAGGCTTTTTATTCTTCGATgt................... : 33736 287 : 1 >>>> IleLeuIleSerGluGluGlnAspGluSerLeuThrPheGlnLeuIlePheL : 303 :!::!!:!!..!.!.|||:!!! ! !!!!!.! ! ||||||:!!|||! ++ValIleLeuGluAsnGluLysGly---IlePheAsnValGlnLeuLeuPheP 33737 : ......agGTGATACTAGAAAACGAGAAAGGA---ATATTCAACGTGCAATTGCTTTTCT : 33856 304 : euThrSerPheIleGlyPheValLeuAlaHisLeuPheValTyrCysTyrValGlyGluI : 323 !!..! !|||:!! !!|||:!!|||!.!|||:!!!:!:!!|||||||||:!!||||||! heValLeuPheValCysPheIleLeuValHisIleTyrIleTyrCysTyrIleGlyGluM 33857 : TCGTGCTGTTCGTATGCTTCATCCTTGTACACATCTACATTTATTGTTACATAGGAGAGA : 33916 324 : leLeuLeuValGln >>>> Target Intron 2 >>>> SerThrGlyMetGlyPh : 333 !:||||||..!!!. 454 bp |||! !! !|||.!! etLeuLeuThrHis+- ++SerArgGluMetSerAs 33917 : TGCTACTCACACATgc.........................agAGCAGAGAAATGAGCAA : 34400 334 : eSerAlaTyrGluSerAsnTrpPheAsnIleProGlyLysGluAlaArgAsnLeuLeuPh : 353 !|||||||||||||||||||||!:!|||:!! !! ! !||||||!:! !|||||||| nSerAlaTyrGluSerAsnTrpTyrAsnValSerProProGluAlaLysCysLeuLeuPh 34401 : TTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCAGAAGCCAAGTGCCTTTTATT : 34460 354 : eIleMetHisArgSerThrIleProLeuCysLeuThrAlaGlyLysPheGlyThrPheSe : 373 |||||||||||||!!!.!! !|||||||||||||||||||||||||||.!!|||||||| eIleMetHisArgThrAlaArgProLeuCysLeuThrAlaGlyLysPheSerThrPheSe 34461 : TATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCAGGAAAATTCAGTACCTTCTC : 34520 374 : rLeuGlnMetPheSerThr >>>> Target Intron 3 >>>> IleValArgThr : 383 |:!!:!!|||||||||||| 83 bp |||:!!!:!||| rMetGluMetPheSerThr++ ++IleLeuLysThr 34521 : CATGGAAATGTTCAGTACTgt.........................agattcTGAAAACA : 34633 384 : SerLeuGlyTyrLeuSerValMetLeuThrValThr : 395 :!!:!!|||||||||||||||:!:|||||||||||| AlaMetGlyTyrLeuSerValLeuLeuThrValThr 34634 : GCAATGGGATATCTTTCAGTTCTCCTCACAGTTACA : 34671 vulgar: CbirOr54NTE 252 395 . KQ414804.1 33634 34671 + 390 M 33 99 5 0 2 I 0 70 3 0 2 M 8 24 G 1 0 M 33 99 5 0 2 I 0 450 3 0 2 M 52 156 5 0 2 I 0 79 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33635 34671 390 + . gene_id 2 ; sequence CbirOr54NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33635 33733 . + . KQ414804.1 exonerate:protein2genome:local exon 33635 33733 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33734 33735 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 33734 33807 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 33806 33807 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 33808 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33808 33930 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 2 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 1 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 3 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 3 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 2 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34671 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34671 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33635 34671 390 + . alignment_id 2 ; Query CbirOr54NTE ; Align 33635 253 99 ; Align 33808 286 24 ; Align 33832 295 99 ; Align 34385 328 156 ; Align 34624 380 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr54NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 187 Query range: 252 -> 327 Target range: 51509 -> 51831 253 : PheAlaLysThrIleGluAspThrPheAsnValValPheLeuIleGlnMetLeuSerCys : 272 ||||||:!!||||||||| ! !||||||:!!:!!.!!|||||||||||||||.!!||| PheAlaGluThrIleGluArgCysPheAsnMetMetLeuLeuIleGlnMetLeuGlyCys 51510 : TTCGCAGAAACGATAGAGCGTTGTTTCAATATGATGCTTCTGATTCAGATGCTCGGTTGT : 51567 273 : ThrIleGlnLeuCysPheGlnGlyPheGlnValPheArgIle >>>> Target Intr : 287 |||:!!||||||||||||||| !!||||||!.! !! !!: 100 bp ThrValGlnLeuCysPheGlnCysPheGlnAlaVal---Met++ 51568 : ACCGTTCAGCTATGCTTCCAGTGTTTCCAAGCAGTC---ATGgt................ : 51611 288 : on 1 >>>> LeuIleSerGluGluGlnAspGluSerLeuThrPheGlnLeuIlePheL : 303 ! !|||..!|||||| !||||||!:!::: ||||||::::::|||| ++SerIleAspGluGluIleAspGluAsnMetIlePheGlnIleLeuPheL 51612 : .........agTCAATTGACGAGGAAATAGATGAAAACAtgattttccaaattctctTTT : 51757 304 : euThrSerPheIleGlyPheValLeuAlaHisLeuPheValTyrCysTyrValGlyGluI : 323 || !! !!:!:!:! !!:!|||:!! !!!.||||||:!!||||||||||||||||||! euLeuPheTyrValValTyrValMetLeuGlnLeuPheLeuTyrCysTyrValGlyGluA 51758 : TGCTGTTCTACGTGGTTTACGTGATGCTACAATTATTCTTGTATTGTTACGTGGGTGAAA : 51817 324 : leLeuLeuValGln : 327 |||! !|||:!! rgLeuSerValGlu 51818 : GGCTTTCCGTTGAG : 51831 vulgar: CbirOr54NTE 252 327 . KQ414804.1 51509 51831 + 187 M 32 96 G 1 0 M 1 3 5 0 2 I 0 96 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51510 51831 187 + . gene_id 3 ; sequence CbirOr54NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51510 51608 . + . KQ414804.1 exonerate:protein2genome:local exon 51510 51608 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local splice5 51609 51610 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51609 51708 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51707 51708 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 51709 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51709 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51510 51831 187 + . alignment_id 3 ; Query CbirOr54NTE ; Align 51510 253 96 ; Align 51606 286 3 ; Align 51709 287 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr54NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 318 -> 382 Target range: 39938 -> 40130 319 : TyrValGlyGluIleLeuLeuValGlnSerThrGlyMetGlyPheSerAlaTyrGluSer : 338 |||::: :::||| |||||||||!!:||| |||||||||!!:!!! TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 339 : AsnTrpPheAsnIleProGlyLysGluAlaArgAsnLeuLeuPheIleMetHisArgSer : 358 ||||||!:!:!!:!!||| !|||.!.||| !:::|||:!!.!!:!:!!: !|||:!! AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 359 : ThrIleProLeuCysLeuThrAlaGlyLysPheGlyThrPheSerLeuGlnMetPheSer : 378 !:!: !!!!! :!!|||||||||||||||.!! !!|||||||||:!!:!!|||!:! GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsn 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAAC : 40116 379 : ThrIleValArg : 382 .!!:!: !||| AlaValSerArg 40117 : GCTGTGAGTCGA : 40130 vulgar: CbirOr54NTE 318 382 . KQ414804.1 39938 40130 + 141 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40130 141 + . gene_id 4 ; sequence CbirOr54NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39939 40130 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40130 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40130 141 + . alignment_id 4 ; Query CbirOr54NTE ; Align 39939 319 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr54NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 1 -> 92 Target range: 35906 -> 36176 2 : LeuAsnPheAlaIleGlyTrpAsnArgPheAsnLeuGlyLeuValGlyIleTrpProGly : 21 :!!:!!||||||!!:|||||||||||||||!:!|||..!:!!:!!|||:!:||||||! ! MetAspPheAlaMetGlyTrpAsnArgPheSerLeuSerValLeuGlyValTrpProGlu 35907 : ATGGATTTTGCTATGGGATGGAATCGTTTCAGTTTATCTGTACTTGGCGTGTGGCCAGAA : 35964 22 : ProLeuGlnAsnIleLysTrpIleSerGlyLeuSerArgCysArgPheLeuIleAlaSer : 41 ||| !:!!! !!!. ! ! !! ! !|||!.!! !! !|||! !.!!.!!!!! ProArgLysMetSerAsnLeuSerArgPheAlaSerAsnPheIlePheTrpPheThrThr 35965 : CCGAGAAAGATGTCTAACCTGTCACGATTCGCGTCTAACTTTATATTCTGGTTCACGACT : 36024 42 : PhePheMetLeuGlyPheMetCysIleProGlnSerThrAsnLeuIlePheIleTrpGly : 61 !!..!.! !:!!! !|||!!:||| !||||||! !|||:!!|||:!!... LeuIleThrValValPheIleCysAlaProGlnMetThrHisLeuValLeuLysSerThr 36025 : TTGATAACGGTTGTCTTCATATGCGCTCCCCAAATGACGCATTTGGTAttaaaatcgacg : 36084 62 : AsnAlaAspMetMetThrGluAsnLeuAlaThrAlaAsnIleProValAlaAsnAlaPhe : 81 ||| ||| !:!!! !||||||||| :!!!.!|||||||||:!! ! !:!!!!. AsnLeuAspGluValIleGluAsnLeu---SerValAsnIleProMetLeuPheSerLeu 36085 : aatttgGACGAGGTGATAGAGAATCTG---TCGGTCAACATACCGATGCTCTTCTCATTG : 36141 82 : MetLysAlaPheValIleTrpArgHisArgLys : 92 ||| !.!!:!!:!: ! !!.!|||||| GlyLysGlnIleIleLeuArgTyrArgArgLys 36142 : GGCAAGCAAATCATTCTGCGTTATCGTAGAAAA : 36176 vulgar: CbirOr54NTE 1 92 . KQ414804.1 35906 36176 + 138 M 69 207 G 1 0 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 35907 36176 138 + . gene_id 5 ; sequence CbirOr54NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 35907 36176 . + . KQ414804.1 exonerate:protein2genome:local exon 35907 36176 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 35907 36176 138 + . alignment_id 5 ; Query CbirOr54NTE ; Align 35907 2 207 ; Align 36114 72 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr53PN(F) Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 987 Query range: 0 -> 334 Target range: 35900 -> 37940 1 : MetProMetGluPheAlaMetGlyTrpAsnLysPheAsnLeuThrLeuLeuGlyValTrp : 20 :!: !|||!!:||||||||||||||||||:::|||!:!|||:!!:!!|||||||||||| ValGluMetAspPheAlaMetGlyTrpAsnArgPheSerLeuSerValLeuGlyValTrp 35901 : GTTGAAATGGATTTTGCTATGGGATGGAATCGTTTCAGTTTATCTGTACTTGGCGTGTGG : 35958 21 : ProGluProThrLysThrSerArgThrMetArgCysIleSerSerPheIlePheTrpSer : 40 |||||||||! !|||! !|||!.! ! |||! ! |||!:!||||||||||||! ! ProGluProArgLysMetSerAsnLeuSerArgPheAlaSerAsnPheIlePheTrpPhe 35959 : CCAGAACCGAGAAAGATGTCTAACCTGTCACGATTCGCGTCTAACTTTATATTCTGGTTC : 36018 41 : SerSerPheIleThrPheValPheIleCysValPheIleArgLeuProGlnThrAlaHis : 60 !!!!!!!!.|||||| !!||||||||||||!.! ||||||! !.!!||| ThrThrLeuIleThrValValPheIleCysAla------------ProGlnMetThrHis 36019 : ACGACTTTGATAACGGTTGTCTTCATATGCGCT------------CCCCAAATGACGCAT : 36066 61 : LeuIleLeuGluSerThrSerLeuAsnLysIleValGluAsnLeuLeuIleAsnIlePro : 80 |||:!!|||:::||||||:::|||:!!:!!:!::!!|||||||||! !:!!||||||||| LeuValLeuLysSerThrAsnLeuAspGluValIleGluAsnLeuSerValAsnIlePro 36067 : TTGGTAttaaaatcgacgaatttgGACGAGGTGATAGAGAATCTGTCGGTCAACATACCG : 36126 81 : IleIlePheAlaTrpThrArgGlnLeuValLeuTrpTyrHisGlyLys{A} >>>> Ta : 97 !!::!!|||:!!! ! !!:!|||:!!:!!||| ! |||!.! !!|||{|} MetLeuPheSerLeuGlyLysGlnIleIleLeuArgTyrArgArgLys{A}++ 36127 : ATGCTCTTCTCATTGGGCAAGCAAATCATTCTGCGTTATCGTAGAAAA{G}gt....... : 36180 98 : rget Intron 1 >>>> {la}LeuThrThrLeuValGlyGlnMetLeuAsnAspTrp : 109 381 bp {||}|||..! !|||:!!.!!|||!!:!!!:!!|||||| ++{la}LeuValPheLeuMetSerGlnIlePheAspAspTrp 36181 : ..................ag{CG}CTAGTATTCTTAATGAGCCAAATATTCGACGACTGG : 36594 110 : ThrGlnProValProGluProAsnArgArgLeuMetLeuArgAsnAlaArgLeuSerArg : 129 .!!:!!|||:!!|||||| !:!!|||!.! !||||||!:!!.!|||!:!:!!|||||| AlaGluProIleProGluValAspArgHisThrMetLeuLysThrAlaLysIleSerArg 36595 : GCGGAACCAATCCCGGAGGTGGATCGCCACACGATGCTGAAGACCGCGAAAATTAGTCGA : 36654 130 : HisValSerLeuValCysSerValLeuThrTyrIleMetValSerSerPheIleValLeu : 149 :!!|||:!!|||||||||:!!|||||||||:!!||||||! !:!!|||:!: !||| MetIleSerIleValCysSerIleLeuThrTyrValMetValLeuAlaPheLeuSerLeu 36655 : ATGATATCCATAGTCTGTTCTATCCTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTT : 36714 150 : GlnIleTrpAlaAsnAlaGlnAsnAlaAlaGluThrAspLeuGlyGlyLeuIleHisPro : 169 |||||||||::!!:! !||||||.!!:!!||| !:!!:!!|||||||||:!! !||| GlnIleTrpSerSerMetGlnAsnThrSerGluPheAsnValGlyGlyLeuLeuIlePro 36715 : CAAATTTGGAGCAGCATGCAAAACACCTCGGAGTTCAACGTAGGAGGACTACTTATCCCG : 36774 170 : AlaThrSerProTyrAspThrGlnLysSerProAsnTyrGlnIleThrTrpLeuGlyGln : 189 ||||||! !||||||||||||.!.|||||||||||||||:!!|||||||||||||||||| AlaThrPheProTyrAspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGln 36775 : GCCACATTTCCATACGACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAA : 36834 190 : PheIleGlyThrValLeuThrAlaIleCysTyrSerCysPheAspThrPheLeuAlaVal : 209 |||:!:||||||||||||!:!||||||||||||||||||||||||||||||:!!|||||| PheValGlyThrValLeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaVal 36835 : TTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTT : 36894 210 : LeuValLeuHisLeuCysGlyGlnLeuThrMetLeuLysThrArgLeuArgAsnLeuVal : 229 ||||||||||||:!!|||||||||||||||:!:|||:::! ! !|||..!||||||!.! LeuValLeuHisIleCysGlyGlnLeuThrValLeuArgIleAlaLeuGluAsnLeuAla 36895 : CTCGTGTTACACATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTCGAGAATCTTGCT : 36954 230 : AspAlaThrArgGlyAspAsnPhePheAlaTyrGlnAspArgLeuSerPheIleValGln : 249 :!!.!!|||! ! !||||||!:! ! !!:!|||!!:||||||.!!!:!||||||!!. AsnThrThrIleLysAspAsnTyrSerLysPheGlnGluArgLeuGlyTyrIleValHis 36955 : AACACGACAATAAAAGACAACTACAGCAAGTTCCAAGAACGATTAGGATACATTGTGCAC : 37014 250 : LysHisGluGluLeuTyr{Ly} >>>> Target Intron 2 >>>> {s}PheAla : 258 !:!!!..!.:!!|||!:!{!:} 534 bp {!}::!||| ArgGlnAsnGlnLeuPhe{Ar}++ ++{g}TyrAla 37015 : AGGCAGAATCAATTGTTC{AG}gt.........................ag{g}taCGCT : 37575 259 : IleLeuValGluAspCysPheAsnLeuThrLeuProGlyGlnThrMetIleSerThrAla : 278 :!::!!||||||||||||||||||:!!! !|||! !! !||||||:!:!!:!!!|||||| ValIleValGluAspCysPheAsnIleMetLeuLeuValGlnThrLeuMetCysThrAla 37576 : GTGATAGTGGAAGATTGCTTCAACATCATGCTGCTCGTTCAAACTTTAATGTGCACCGCC : 37635 279 : ThrPheCysLeuThrGlyTyrArgIleIleIle >>>> Target Intron 3 >>>> : 290 ! !.!!|||:!!||||||||||||!!:!!:! ! 135 bp MetLeuCysMetThrGlyTyrArgMetMetThr++ 37636 : ATGCTCTGTATGACTGGATATCGCATGATGACCgt......................... : 37673 291 : SerMetSerGlnAsnLysThrGluLeuProValValAlaMetValPhePheValValH : 309 |||:!:!:!|||.!.:!! !!!::!!|||:!!:!!...::::::||||||::: | ++SerValAsnGlnGluGlnGluAspValProIleIleGlyValIlePhePheIleSerH 37674 : agTCTGTTAATCAGGAGCAAGAGGATGTACCGATTATTggagtaatattttttatctcaC : 37863 310 : isValThrTyrThrMetLeuHisIlePheValTyrCysTyrValGlyGluGlnLeuLeuI : 329 |||||||||||||||||||||||:::|||:::|||||||||||||||||| !|||||| isValThrTyrThrMetLeuHisLeuPheIleTyrCysTyrValGlyGluThrLeuLeuG 37864 : ACGTGACCTATACCATGTTAcatctatttatttattgctacgtGGGCGAAACACTTCTTG : 37923 330 : leGluSerThrGlyLeu : 334 !:!! !!:!!.!||| lyGlnValSerAlaLeu 37924 : GACAAGTGAGTGCTCTA : 37940 vulgar: CbirOr53PN(F) 0 334 . KQ414804.1 35900 37940 + 987 M 51 153 G 4 0 M 41 123 S 0 1 5 0 2 I 0 377 3 0 2 S 1 2 M 158 474 S 0 2 5 0 2 I 0 530 3 0 2 S 1 1 M 33 99 5 0 2 I 0 131 3 0 2 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 35901 37940 987 + . gene_id 1 ; sequence CbirOr53PN(F) ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 35901 36177 . + . KQ414804.1 exonerate:protein2genome:local exon 35901 36177 . + . insertions 0 ; deletions 4 KQ414804.1 exonerate:protein2genome:local splice5 36178 36179 . + . intron_id 1 ; splice_site "gt" KQ414804.1 exonerate:protein2genome:local intron 36178 36558 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 36557 36558 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 36559 37036 . + . KQ414804.1 exonerate:protein2genome:local exon 36559 37036 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 37037 37038 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 37037 37570 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 37569 37570 . + . intron_id 1 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 37571 37670 . + . KQ414804.1 exonerate:protein2genome:local exon 37571 37670 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 37671 37672 . + . intron_id 3 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 37671 37805 . + . intron_id 3 KQ414804.1 exonerate:protein2genome:local splice3 37804 37805 . + . intron_id 2 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 37806 37940 . + . KQ414804.1 exonerate:protein2genome:local exon 37806 37940 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 35901 37940 987 + . alignment_id 1 ; Query CbirOr53PN(F) ; Align 35901 1 153 ; Align 36054 56 123 ; Align 36561 98 474 ; Align 37572 257 99 ; Align 37806 290 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr53PN(F) Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 274 Query range: 255 -> 398 Target range: 33631 -> 34671 256 : LysPheAlaIleLeuValGluAspCysPheAsnLeuThrLeuProGlyGlnThrMetIle : 275 ::!||||||! !:!!:!!||||||||||||||| ! !||| ! !|||! !:!!:!! ArgPheAlaThrMetIleGluAspCysPheAsnThrLeuLeuLeuIleGlnMetLeuLeu 33632 : aGGTTCGCAACTATGATCGAGGATTGTTTCAACACATTGCTATTAATTCAGATGCTGCTC : 33689 276 : SerThrAlaThrPheCysLeuThrGlyTyrArgIleIleIle >>>> Target Intr : 290 !!!|||!.! !.!.|||!!! !|||!:! !.!!.!! ! 74 bp CysThrValGluIleCysPheGlnGlyPheLeuPhePheAsp++ 33690 : TGTACCGTCGAAATATGCTTTCAAGGCTTTTTATTCTTCGATgt................ : 33736 291 : on 1 >>>> SerMetSerGlnAsnLysThrGluLeuProValValAlaMetValPheP : 306 !!!: !:!!|||:!!! !! !:!! ! !||| !:!!:!!|||| ++ValIleLeuGluAsnGluLysGlyIlePheAsnValGlnLeuLeuPheP 33737 : .........agGTGATACTAGAAAACGAGAAAGGAATATTCAACGTGCAATTGCTTTTCT : 33856 307 : heValValHisValThrTyrThrMetLeuHisIlePheValTyrCysTyrValGlyGluG : 326 |||||:!! !||| !!:!! !:!::!!||||||!:!:!!|||||||||:!!||||||. heValLeuPheValCysPheIleLeuValHisIleTyrIleTyrCysTyrIleGlyGluM 33857 : TCGTGCTGTTCGTATGCTTCATCCTTGTACACATCTACATTTATTGTTACATAGGAGAGA : 33916 327 : lnLeuLeuIleGlu >>>> Target Intron 2 >>>> SerThrGlyLeuAlaGl : 336 .!||||||! !.!. 454 bp |||! !! !:!!::!.! etLeuLeuThrHis+- ++SerArgGluMetSerAs 33917 : TGCTACTCACACATgc.........................agAGCAGAGAAATGAGCAA : 34400 337 : nSerAlaTyrAspCysGluTrpTyrGluLeuProSerLysLysAlaIleCysLeuIleIl : 356 .|||||||||!!:! .!.||||||.!.:!! !! !! !:!!|||! ||||||:!!.! nSerAlaTyrGluSerAsnTrpTyrAsnValSerProProGluAlaLysCysLeuLeuPh 34401 : TTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCAGAAGCCAAGTGCCTTTTATT : 34460 357 : eIleIleIleArgAlaAsnValSerPheLysIleThrAlaGlyLysPheSerSerPheSe : 376 !|||!!: !|||.!! ! ! !!.!! :!:||||||||||||||||||!!!||||| eIleMetHisArgThrAlaArgProLeuCysLeuThrAlaGlyLysPheSerThrPheSe 34461 : TATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCAGGAAAATTCAGTACCTTCTC : 34520 377 : rLeuGluLeuPheGlyThr >>>> Target Intron 3 >>>> IleLeuLysThr : 386 |:!!|||:!!|||.!!||| 83 bp |||||||||||| rMetGluMetPheSerThr++ ++IleLeuLysThr 34521 : CATGGAAATGTTCAGTACTgt.........................agattcTGAAAACA : 34633 387 : SerAlaGlyTyrLeuSerValLeuLeuAlaMetSer : 398 :!! !|||||||||||||||||||||.!!:!:!!! AlaMetGlyTyrLeuSerValLeuLeuThrValThr 34634 : GCAATGGGATATCTTTCAGTTCTCCTCACAGTTACA : 34671 vulgar: CbirOr53PN(F) 255 398 . KQ414804.1 33631 34671 + 274 M 34 102 5 0 2 I 0 70 3 0 2 M 41 123 5 0 2 I 0 450 3 0 2 M 52 156 5 0 2 I 0 79 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33632 34671 274 + . gene_id 2 ; sequence CbirOr53PN(F) ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33632 33733 . + . KQ414804.1 exonerate:protein2genome:local exon 33632 33733 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33734 33735 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 33734 33807 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 33806 33807 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 33808 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33808 33930 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 2 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 1 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 3 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 3 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 2 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34671 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34671 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33632 34671 274 + . alignment_id 2 ; Query CbirOr53PN(F) ; Align 33632 256 102 ; Align 33808 290 123 ; Align 34385 331 156 ; Align 34624 383 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr53PN(F) Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 236 Query range: 289 -> 397 Target range: 51708 -> 52349 290 : SerMetSerGlnAsnLysThrGluLeuProValValAlaMetValPhePheValValHis : 309 |||!!:..!:!!.!.! ! !||| ! ::: ::::::|||!!.:!! !!:!! SerIleAspGluGluIleAspGluAsnMetIlePheGlnIleLeuPheLeuLeuPheTyr 51709 : TCAATTGACGAGGAAATAGATGAAAACAtgattttccaaattctctTTTTGCTGTTCTAC : 51766 310 : ValThrTyrThrMetLeuHisIlePheValTyrCysTyrValGlyGluGlnLeuLeuIle : 329 |||..!|||..!||||||!!.:!!|||:!!||||||||||||||||||::!|||! !:!! ValValTyrValMetLeuGlnLeuPheLeuTyrCysTyrValGlyGluArgLeuSerVal 51767 : GTGGTTTACGTGATGCTACAATTATTCTTGTATTGTTACGTGGGTGAAAGGCTTTCCGTT : 51826 330 : Glu >>>> Target Intron 1 >>>> SerThrGlyLeuAlaGlnSerAlaTyrA : 340 ||| 60 bp |||..!! !:!!|||.!.:!!||||||| Glu++ ++SerValGluIleAlaAsnAlaAlaTyrA 51827 : GAGgt.........................agAGCGTTGAAATAGCTAACGCGGCATACG : 51919 341 : spCysGluTrpTyrGluLeuProSerLysLysAlaIleCysLeuIleIleIleIleIleA : 360 ||! !|||||||||.!.||| !! !!|||!!.|||! ! |||:!!||||||!!: !| spSerGluTrpTyrAsnLeuSerProLysAsnAlaLysLeuLeuLeuIleIleMetArgA 51920 : ATTCTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTGCTACTAATTATCATGCGAC : 51979 361 : rgAlaAsnValSerPheLysIleThrAlaGlyLysPheSerSerPheSerLeuGluLeuP : 380 |||||!..:!! !!.!.:!!||||||||||||!:!|||:!!!!!|||!!!||| !|||! rgAlaArgLeuProLeuGlnIleThrAlaGlyArgPheAlaThrPheThrLeuMetLeuT 51980 : GAGCCAGGTTACCTCTACAAATCACTGCAGGTAGATTTGCTACTTTCACTCTGATGCTGT : 52039 381 : heGlyThr >>>> Target Intron 2 >>>> IleLeuLysThrSerAla<-><- : 389 :!..! ! 251 bp |||||||||||||||!.! yrSerGln++ ++IleLeuLysThrSerValGlyLy 52040 : ATTCACAGgt.........................agATTTTAAAAACCTCGGTGGGAAA : 52320 390 : >GlyTyrLeuSerValLeuLeuAlaMet : 397 ||||||:!!|||||||||! !|||||| sGlyTyrValSerValLeuTyrAlaMet 52321 : AGGTTATGTTTCTGTTCTATACGCAATG : 52349 vulgar: CbirOr53PN(F) 289 397 . KQ414804.1 51708 52349 + 236 M 41 123 5 0 2 I 0 56 3 0 2 M 52 156 5 0 2 I 0 247 3 0 2 M 6 18 G 0 6 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51709 52349 236 + . gene_id 3 ; sequence CbirOr53PN(F) ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51709 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51709 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52047 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52047 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 52048 52049 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 52048 52298 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 52297 52298 . + . intron_id 1 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 52299 52349 . + . KQ414804.1 exonerate:protein2genome:local exon 52299 52349 . + . insertions 6 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51709 52349 236 + . alignment_id 3 ; Query CbirOr53PN(F) ; Align 51709 290 123 ; Align 51892 331 156 ; Align 52299 383 18 ; Align 52323 389 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr53PN(F) Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 226 Query range: 330 -> 404 Target range: 39965 -> 40265 331 : SerThrGlyLeuAlaGlnSerAlaTyrAspCysGluTrpTyrGluLeuProSerLysLys : 350 |||||||||:!!!.!||||||||||||||||||.!.||||||!!:|||||| !!||| ! SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 351 : AlaIleCysLeuIleIleIleIleIleArgAlaAsnValSerPheLysIleThrAlaGly : 370 |||:!!! |||:!!|||:!:||| !||||||.!.|||||||||:!!|||||||||||| AlaValSerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGly 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGA : 40083 371 : LysPheSerSerPheSerLeuGluLeuPheGlyThrIleLeu{L} >>>> Target I : 385 ||||||||| !!||||||||||||||||||..!.!!:!: !{:} 78 LysPheSerProPheSerLeuGluLeuPheAsnAlaValSer{G}+- 40084 : AAATTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTGTGAGT{C}ga............. : 40131 386 : ntron 1 >>>> {ys}ThrSerAlaGlyTyrLeuSerValLeuLeuAlaMetSerAsp : 399 bp {!!}||||||||||||||||||||||||||||||||||||!.!||| +-{ln}ThrSerAlaGlyTyrLeuSerValLeuLeuAlaMetLysAsp 40132 : ............aa{AA}ACGTCTGCTGGATATCTTTCCGTGTTGCTAGCTATGAAAGAC : 40248 400 : ArgLeuAsnGluGlu : 404 |||||| !|||||| ArgLeuValGluGlu 40249 : AGACTGGTCGAAGAG : 40265 vulgar: CbirOr53PN(F) 330 404 . KQ414804.1 39965 40265 + 226 M 54 162 S 0 1 5 0 2 I 0 74 3 0 2 S 1 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40265 226 + . gene_id 4 ; sequence CbirOr53PN(F) ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39966 40128 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40128 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40129 40130 . + . intron_id 1 ; splice_site "GA" KQ414804.1 exonerate:protein2genome:local intron 40129 40206 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40205 40206 . + . intron_id 0 ; splice_site "AA" KQ414804.1 exonerate:protein2genome:local cds 40207 40265 . + . KQ414804.1 exonerate:protein2genome:local exon 40207 40265 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39966 40265 226 + . alignment_id 4 ; Query CbirOr53PN(F) ; Align 39966 331 162 ; Align 40209 386 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr53PN(F) Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 203 Query range: 85 -> 254 Target range: 31086 -> 31602 86 : ThrArgGlnLeuValLeuTrpTyrHisGlyLysAlaLeuThrThrLeuValGlyGlnMet : 105 ||||||::: ::::::::: ...||||||.!!! ! !!:!!:!! !....!. ThrArgGluArgArgIlePheHisPheAsnLysAlaPheLysProValIleLysSerPhe 31087 : ACaagggaaagaagaatttttcattttaacaaagcttTCAAGCCCGTTATAAAATCCTTC : 31144 106 : LeuAsnAspTrpThrGlnProValProGluProAsnArgArgLeuMetLeuArgAsnAla : 125 ! !:!!||||||! ! !! ! ! ::: ...:::... !||||||!:!!..||| TyrAspAspTrpLysThrSerArgThrLysGluGluLysGluThrMetLeuLysArgAla 31145 : TACGACGATTGGAAAACCTCAAGGACcaaggaggagaaggagacCATGTTGAAGAGAGCC : 31204 126 : ArgLeuSerArgHisValSerLeuValCysSerValLeuThrTyrIleMetValSerSer : 145 !:!!!!:!!!:!!!.:!!|||:!! !|||||||||||||||! ! !||||||!!! ! LysPheAlaLysGlnIleSerIleTrpCysSerValLeuThrLeuThrMetValThrVal 31205 : AAATTTGCGAAACAAATTTCCATCTGGTGCTCAGTATTAACCTTGACCATGGTCACTGTT : 31264 146 : PheIleValLeuGlnIleTrpAlaAsnAlaGln<-><->AsnAlaAlaGluThrAspLeu : 163 !:!:!! !|||!:! ||| !! ! !||| !..||| !:!!! !.!. ! TyrLeuSerLeuArgAlaTrpIleIleTyrGlnLeuAspArgAlaAsnGlnLysGlnAsp 31265 : TATCTAAGTCTTCGAGCGTGGATCATCTACCAGCTTGATAGGGCAAACCAGAAACAGGAT : 31324 164 : GlyGlyLeuIleHisProAlaThrSerProTyrAspThrGlnLysSerProAsnTyrGln : 183 !! !|||:!::!!|||!.! !! !|||!:!|||! !!:: !! ! ! ! ! ArgLeuLeuLeuTyrProGlyTyrPheProPheAspIleArgProIleGlyValLeuLeu 31325 : CGTCTGCTCCTGTACCCTGGCTATTTTCCCTTCGATATTCGTCCAATAGGGGTACTACTG : 31384 184 : IleThrTrpLeuGlyGlnPheIleGlyThrValLeuThrAlaIleCysTyrSerCysPhe : 203 ||| !!!|||||| ! :!!!.!.!! !! !.!!!.!||| !!|||!!! ! ! SerThrAsnPheGlyGlnValLeuAlaAlaTyrSerAlaValIleSerTyrThrThrVal 31385 : TCGACCAATTTTGGCCAAGTGCTCGCAGCGTATTCCGCTGTTATCAGTTACACCACCGTG : 31444 204 : AspThrPheLeuAlaValLeuValLeuHisLeuCysGlyGlnLeuThrMetLeuLysThr : 223 |||||||||:!!|||:!!|||:!!:!!|||:!!|||||||||!!! !!!:|||!:! ! AspThrPheIleAlaMetLeuIleMetHisIleCysGlyGlnPheGluIleLeuArgGln 31445 : GATACATTTATCGCGATGCTGATAATGCACATATGCGGACAATTTGAGATACTGAGACAG : 31504 224 : ArgLeuArgAsnLeuVal<->AspAlaThrArgGlyAspAsnPhePheAlaTyrGlnAsp : 242 !:!||||||!..|||:!! |||! !! !!:! ! !:! ! !! ! !||| ! LysLeuArgArgLeuMetAspAspGluLysLysThrArgSerValAspGluIleGlnLys 31505 : AAATTACGAAGGCTGATGGATGACGAGAAGAAGACCAGAAGCGTGGATGAGATTCAGAAG : 31564 243 : ArgLeuSerPheIleValGlnLysHisGluGluLeu : 254 ..!||| !!!.|||:!!:!!!:!||||||.!.||| GluLeuValLeuIleIleGluArgHisGluHisLeu 31565 : GAGCTGGTTTTGATCATAGAGAGGCATGAGCATCTA : 31602 vulgar: CbirOr53PN(F) 85 254 . KQ414804.1 31086 31602 + 203 M 71 213 G 0 6 M 73 219 G 0 3 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31087 31602 203 + . gene_id 5 ; sequence CbirOr53PN(F) ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31087 31602 . + . KQ414804.1 exonerate:protein2genome:local exon 31087 31602 . + . insertions 9 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 31087 31602 203 + . alignment_id 5 ; Query CbirOr53PN(F) ; Align 31087 86 213 ; Align 31306 157 219 ; Align 31528 230 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr53PN(F) Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 165 -> 260 Target range: 44874 -> 45147 166 : LeuIleHisProAlaThrSerProTyrAspThrGlnLysSerProAsnTyrGlnIleThr : 185 |||:!! !! !||| !! !|||||||||!:!.!. ||||||||||||:!!.!!||| LeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThr 44875 : CTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACA : 44932 186 : TrpLeuGlyGlnPheIleGlyThrValLeuThrAlaIleCysTyrSerCysPheAspThr : 205 !:!!!.!|||.!!|||!.!.!! !!! !.!!|||! ! |||!!!..! !!|||||| ValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThr 44933 : GTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACT : 44992 206 : PheLeuAlaValLeuValLeuHisLeuCysGlyGlnLeuThrMetLeuLysThrArgLeu : 225 |||:!!!.!:!!|||:!!||||||:!!|||||||||||| :!!!.!||| PheIleValMetLeuIleLeuHisValCysGlyGlnLeu------------SerAsnLeu 44993 : TTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTT------------TCGAATTTG : 45040 226 : ArgAsnLeuValAspAlaThrArgGlyAspAsnPhePheAlaTyrGlnAspArgLeuSer : 245 |||||| ! !!! ! ! !!:!!.! !:!! ! .!!! |||! !:!|||.!! ArgAsnGluPheGlyLysLeuGlnAlaCysAspLysValThrLeuGlnAlaLysLeuGly 45041 : AGAAACGAATTCGGTAAGCTTCAAGCATGCGATAAAGTAACATTACAGGCGAAGTTGGGG : 45100 246 : PheIleValGlnLysHisGluGluLeuTyrLysPheAlaIleLeu : 260 |||||||||||||||||| ! ||| !!!:!|||!.! !||| LysIleValGlnLysHisGluTyrLeuAsnArgPheValSerLeu 45101 : AAAATCGTGCAGAAACACGAATATCTTAACAGGTTCGTATCATTG : 45147 vulgar: CbirOr53PN(F) 165 260 . KQ414804.1 44874 45147 + 140 M 53 159 G 4 0 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44875 45147 140 + . gene_id 6 ; sequence CbirOr53PN(F) ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44875 45147 . + . KQ414804.1 exonerate:protein2genome:local exon 44875 45147 . + . insertions 0 ; deletions 4 KQ414804.1 exonerate:protein2genome:local similarity 44875 45147 140 + . alignment_id 6 ; Query CbirOr53PN(F) ; Align 44875 166 159 ; Align 45034 223 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr51 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 311 -> 380 Target range: 34381 -> 34671 312 : GlnSerAspAlaLeuSerPheAlaIleTyrAspCysAsnTrpCysAsnPheProProAsn : 331 |||||| ! !:!!||| !:!! !|||!!:! ||||||! !||| !! !!||| GlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProPro 34382 : CAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCA : 34439 332 : AspValArgAspLeuAlaPheIleMetIleLysThrAsnIleProIleArgLeuThrAla : 351 !!:!.!!:! !||| !||||||||| !!:!||| ! !|||:!! !!||||||||| GluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAla 34440 : GAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCA : 34499 352 : GlyLysPhePheTyrValThrLeuThrThrPheThrAsp >>>> Target Intron : 365 ||||||||| ! ! !!:!!:!! !! !|||!:! ! 83 bp GlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34500 : GGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt................... : 34543 366 : 1 >>>> IleLeuLysThrAlaValSerTyrLeuSerAlaLeuArgValMetThr : 380 |||||||||||||||:!!.!!|||||||||!.!|||! !..!:!:||| ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeuThrValThr 34544 : ......agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTCACAGTTACA : 34671 vulgar: CbirOr51 311 380 . KQ414804.1 34381 34671 + 128 M 53 159 5 0 2 I 0 79 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34382 34671 128 + . gene_id 1 ; sequence CbirOr51 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34382 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34382 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34671 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34671 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34382 34671 128 + . alignment_id 1 ; Query CbirOr51 ; Align 34382 312 159 ; Align 34624 365 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr52 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 256 Query range: 5 -> 258 Target range: 35903 -> 37037 6 : AspLeuAsnTyrAlaPheAlaLeuSerArgArgTrpLeuTrpLeuLeuGlyValTrpPro : 25 !!::!!:!!!:!|||.!.!.!! !!:!||| ! ! |||! :!!||||||||||||||| GluMetAspPheAlaMetGlyTrpAsnArgPheSerLeuSerValLeuGlyValTrpPro 35904 : GAAATGGATTTTGCTATGGGATGGAATCGTTTCAGTTTATCTGTACTTGGCGTGTGGCCA : 35961 26 : AspPro<->AsnAlaSerValSerAsnPheHisArgLeuAsnMetArgPheIleIleVal : 44 !!:||| !!. !||| ! !::: ! !! !|||.!.! !||| .!!..! GluProArgLysMetSerAsnLeuSerArgPheAlaSerAsnPheIlePheTrpPheThr 35962 : GAACCGAGAAAGATGTCTAACCTGTCACGATTCGCGTCTAACTTTATATTCTGGTTCACG : 36021 45 : MetCysIleLeuSerPheTyrValIleMetProGlnLeuArgAsnIleIleCysAlaGly : 64 ! ! ||| ! ! !!!:!:!! ! ||||||:!!! !:!!:!::!! ... ThrLeuIleThrValValPheIleCysAlaProGlnMetThrHisLeuValLeuLysSer 36022 : ACTTTGATAACGGTTGTCTTCATATGCGCTCCCCAAATGACGCATTTGGTAttaaaatcg : 36081 65 : GlyAsnIleGlyArgIleValGluCysIleAlaSerValAsnPheSerPheMetAlaLeu : 84 |||:::! !..!:!::!!||| !:!::!! ! !! ! !.!!.!.:!!||| ThrAsnLeuAspGluValIleGluAsnLeuSerValAsnIleProMetLeuPheSerLeu 36082 : acgaatttgGACGAGGTGATAGAGAATCTGTCGGTCAACATACCGATGCTCTTCTCATTG : 36141 85 : SerLysLeuTyrValThrTrpTyrHisAsnGlu{T} >>>> Target Intron 1 > : 96 .!!|||! ! !:!! ! ! |||!.!!..:!!{.} 381 bp GlyLysGlnIleIleLeuArgTyrArgArgLys{A}++ 36142 : GGCAAGCAAATCATTCTGCGTTATCGTAGAAAA{G}gt...................... : 36180 97 : >>> {hr}LeuArgThrLeuMetThrSerValLeuThrAspTrpMetThrSerArgAsn : 113 {!!}||| ! !||||||!:!..!:!!!!! !|||||| ! ! !!! ! ++{la}LeuValPheLeuMetSerGlnIlePheAspAspTrpAlaGluProIlePro 36181 : ...ag{CG}CTAGTATTCTTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCG : 36609 114 : SerArgGluArgAsnThrMetLeuLysPheAlaLysSerGlyArgAsnLeuSerPheGln : 133 ..! !!!:|||:!!|||||||||||| !||||||! !.!!|||! :!!|||.!. GluValAspArgHisThrMetLeuLysThrAlaLysIleSerArgMetIleSerIleVal 36610 : GAGGTGGATCGCCACACGATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTC : 36669 134 : CysTyrIleTyrGlyThrIleLeuPheMetPheTyrIleLeuLeuAsnLeuGlnArgMet : 153 |||! !||| ! !:!!:!! !!:!! !!:!:!:! !|||.!.:!! !!!!! CysSerIleLeuThrTyrValMetValLeuAlaPheLeuSerLeuGlnIleTrpSerSer 36670 : TGTTCTATCCTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGCAGC : 36729 154 : TyrGlnAsnIleMetLeuGlnGlnGlnGlnArgLysLeuValTyrHisPheAsnTyrPro : 173 ||||||! ! ! :!! .!. ! !! !|||:!! !! !!..!:!||| MetGlnAsnThrSer---GluPheAsnValGlyGlyLeuLeuIleProAlaThrPhePro 36730 : ATGCAAAACACCTCG---GAGTTCAACGTAGGAGGACTACTTATCCCGGCCACATTTCCA : 36786 174 : TyrAsnValGlnLysArgProAsnTyrGluIleThrTyrLeuIleGlnIleSerGlyGly : 193 |||:!!..!.!.|||!!!||||||||||||||||||!::||| !|||.!! !||| ! TyrAspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThr 36787 : TACGACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACA : 36846 194 : ThrTyrLeuAlaValIleAsnCysSerValAspSerPheIleLeuIleLeuLeuLeuHis : 213 ..!! !|||:!! ! !!! !!!! !!|||!!!|||:!! !:!!|||:!!|||||| ValLeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHis 36847 : GTGTTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACAC : 36906 214 : MetCysAlaGlnLeuIleAsnLeuArgValAlaLeuAsnAspLeuValAsnAspLeuAla : 233 !!:|||!.!||||||! ! !||||||:!!||||||.!.:!!|||!.!||| ! ! IleCysGlyGlnLeuThrValLeuArgIleAlaLeuGluAsnLeuAlaAsnThrThrIle 36907 : ATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTCGAGAATCTTGCTAACACGACAATA : 36966 234 : AsnHisSerIleSerSerSerLysPheLysGluCysLeuAlaAlaIleAlaMetArgHis : 253 !!. !!!:! ! |||||||||:!!||| ! |||!.! !|||!.! |||!!. LysAspAsnTyr------SerLysPheGlnGluArgLeuGlyTyrIleValHisArgGln 36967 : AAAGACAACTAC------AGCAAGTTCCAAGAACGATTAGGATACATTGTGCACAGGCAG : 37020 254 : GluHisIleIleArg : 258 .!.!!.:!:.!!||| AsnGlnLeuPheArg 37021 : AATCAATTGTTCAGG : 37037 vulgar: CbirOr52 5 258 . KQ414804.1 35903 37037 + 256 M 22 66 G 0 3 M 68 204 S 0 1 5 0 2 I 0 377 3 0 2 S 1 2 M 62 186 G 1 0 M 78 234 G 2 0 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 35904 37037 256 + . gene_id 1 ; sequence CbirOr52 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 35904 36177 . + . KQ414804.1 exonerate:protein2genome:local exon 35904 36177 . + . insertions 3 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 36178 36179 . + . intron_id 1 ; splice_site "gt" KQ414804.1 exonerate:protein2genome:local intron 36178 36558 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 36557 36558 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 36559 37037 . + . KQ414804.1 exonerate:protein2genome:local exon 36559 37037 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 35904 37037 256 + . alignment_id 1 ; Query CbirOr52 ; Align 35904 6 66 ; Align 35973 28 204 ; Align 36561 97 186 ; Align 36747 160 234 ; Align 36981 240 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr52 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 218 Query range: 281 -> 381 Target range: 51681 -> 52041 282 : IleCysPheGluThrPheGlnValPheThrIleIleThrAspHisLeuGluIleSerAla : 301 ||| ||| ...|||...:!!! :!!||| ! !!!: !|||! !! IlePhePheThrAsnPheAspLeu***SerIleAspGluGluIleAspGluAsnMetIle 51682 : atatttttcacgaattttgaTTTGTAGTCAATTGACGAGGAAATAGATGAAAACAtgatt : 51739 302 : LeuLysMetPhePheLeuLeuSerTyrAlaThrPheValIleMetGlnLeuTyrLeuTyr : 321 ...::::::...|||||||||! !|||!.!..!!:!|||!!::!:||||||!:!|||||| PheGlnIleLeuPheLeuLeuPheTyrValValTyrValMetLeuGlnLeuPheLeuTyr 51740 : ttccaaattctctTTTTGCTGTTCTACGTGGTTTACGTGATGCTACAATTATTCTTGTAT : 51799 322 : CysHisSerAlaGluLysLeuLeuThrGlu >>>> Target Intron 1 >>>> S : 332 |||:!! !!.!|||!:!|||! !..!||| 60 bp | CysTyrValGlyGluArgLeuSerValGlu++ ++S 51800 : TGTTACGTGGGTGAAAGGCTTTCCGTTGAGgt.........................agA : 51892 333 : erValGlyMetAlaTyrGlyAlaTyrGluCysLysTrpTyrGluLeuSerProAsnAspA : 352 |||||! !!!:||| !!!.!||||||!!:! !:!!||||||.!.|||||||||!!.:!!| erValGluIleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLysAsnA 51893 : GCGTTGAAATAGCTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAAAATG : 51952 353 : laLysAsnLeuMetPheIleValTyrArgSerLysIleProLeuGlnLeuThrAlaGlyL : 372 ||||| |||:!:.!!|||:!! |||:!!!:!:!!|||||||||:!!|||||||||! laLysLeuLeuLeuIleIleMetArgArgAlaArgLeuProLeuGlnIleThrAlaGlyA 51953 : CAAAGTTGCTACTAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCAGGTA : 52012 373 : ysPheGlyThrPheSerMetGluMetPhe : 381 :!|||!.!||||||!!!:!! !:!!!:! rgPheAlaThrPheThrLeuMetLeuTyr 52013 : GATTTGCTACTTTCACTCTGATGCTGTAT : 52041 vulgar: CbirOr52 281 381 . KQ414804.1 51681 52041 + 218 M 50 150 5 0 2 I 0 56 3 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51682 52041 218 + . gene_id 2 ; sequence CbirOr52 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51682 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51682 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52041 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52041 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51682 52041 218 + . alignment_id 2 ; Query CbirOr52 ; Align 51682 282 150 ; Align 51892 332 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr52 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 181 Query range: 328 -> 398 Target range: 34375 -> 34668 329 : LeuThrGluSerValGlyMetAlaTyrGlyAlaTyrGluCysLysTrpTyrGluLeuSer : 348 :!! !:!!||| !! !|||::! !!..!|||||||||! !!.||||||.!.:!!||| IlePheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSer 34376 : ATATTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCA : 34433 349 : ProAsnAspAlaLysAsnLeuMetPheIleValTyrArgSerLysIleProLeuGlnLeu : 368 ||| !!:|||||| !|||:!:||||||:!!:!!|||!!! !|||||| ||| ProProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeu 34434 : CCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTG : 34493 369 : ThrAlaGlyLysPheGlyThrPheSerMetGluMetPheIleMet >>>> Target I : 384 |||||||||||||||.!!|||||||||||||||||||||! !! 83 ThrAlaGlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34494 : ACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt............. : 34543 385 : ntron 1 >>>> ThrMetLysThrAlaMetGlyTyrLeuSerAlaMetLeuAlaMet : 398 bp :!!||||||||||||||||||||||||!.!:!:|||.!!:!: ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeuThrVal 34544 : ............agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTCACAGTT : 34668 vulgar: CbirOr52 328 398 . KQ414804.1 34375 34668 + 181 M 55 165 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34376 34668 181 + . gene_id 3 ; sequence CbirOr52 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34376 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34376 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34668 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34668 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34376 34668 181 + . alignment_id 3 ; Query CbirOr52 ; Align 34376 329 165 ; Align 34624 384 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr52 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 331 -> 381 Target range: 39965 -> 40115 332 : SerValGlyMetAlaTyrGlyAlaTyrGluCysLysTrpTyrGluLeuSerProAsnAsp : 351 |||..!|||!!:!.! ! ..!||||||!!:|||!!.||||||!!:||| !!|||!!. !! SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 352 : AlaLysAsnLeuMetPheIleValTyrArgSerLysIleProLeuGlnLeuThrAlaGly : 371 ||| :::|||:!:.!!:!::!!! !|||:!!:!!:!: !!!!!|||:!!||||||||| AlaValSerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGly 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGA : 40083 372 : LysPheGlyThrPheSerMetGluMetPhe : 381 ||||||.!! !!||||||:!:|||:!!||| LysPheSerProPheSerLeuGluLeuPhe 40084 : AAATTCAGTCCCTTTTCTCTCGAGCTGTTT : 40115 vulgar: CbirOr52 331 381 . KQ414804.1 39965 40115 + 139 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40115 139 + . gene_id 4 ; sequence CbirOr52 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39966 40115 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40115 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39966 40115 139 + . alignment_id 4 ; Query CbirOr52 ; Align 39966 332 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr52 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 164 -> 222 Target range: 44871 -> 45045 165 : LysLeuValTyrHisPheAsnTyrProTyrAsnValGlnLysArgProAsnTyrGluIle : 184 !:!|||:!!!:!!.! ! !!!:!||||||:!! !.!. !!!||||||||||||.!! ArgLeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPhe 44872 : AGACTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTT : 44929 185 : ThrTyrLeuIleGlnIleSerGlyGlyThrTyrLeuAlaValIleAsnCysSerValAsp : 204 ||| :!! !||||||! !!.!!.! !||| !|||..!! ! !! :!!|||||| ThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAsp 44930 : ACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGAT : 44989 205 : SerPheIleLeuIleLeuLeuLeuHisMetCysAlaGlnLeuIleAsnLeuArg : 222 !!!||||||:!!!!:|||:!!||||||:!:|||!.!|||||| ||||||||| ThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArg 44990 : ACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGA : 45045 vulgar: CbirOr52 164 222 . KQ414804.1 44871 45045 + 134 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44872 45045 134 + . gene_id 5 ; sequence CbirOr52 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44872 45045 . + . KQ414804.1 exonerate:protein2genome:local exon 44872 45045 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44872 45045 134 + . alignment_id 5 ; Query CbirOr52 ; Align 44872 165 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr48INT Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 295 -> 361 Target range: 34378 -> 34659 296 : TyrGlnMetGluGluValAlaHisSerIleTyrCysCysAsnTrpGlnCysLeuSerVal : 315 !:!|||! ..!|||:!!::!:!!||| !||| ! |||||| ! !:!!||| ! PheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerPro 34379 : TTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCT : 34436 316 : LysPheMetLysAsnValLeuPheValIleMetArgSerGlnGlnProValGlnLeuAla : 335 ! ||| !:!!||||||:!!!!: |||!!! !::|||:!! |||.!! ProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThr 34437 : CCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACT : 34496 336 : AlaGlyLysPheIleValValAsnIleGluThrTyrMetThr >>>> Target Intr : 350 ||||||||||||! !..! !!::!!!:|||! !!:!! ||| 83 bp AlaGlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34497 : GCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt................ : 34543 351 : on 1 >>>> IleLeuLysThrSerLeuSerTyrLeuSerValLeu : 361 ||||||||||||:!!:!!.!!||||||||||||||| ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeu 34544 : .........agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTC : 34659 vulgar: CbirOr48INT 295 361 . KQ414804.1 34378 34659 + 121 M 54 162 5 0 2 I 0 79 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34379 34659 121 + . gene_id 1 ; sequence CbirOr48INT ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34379 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34379 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34659 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34659 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34379 34659 121 + . alignment_id 1 ; Query CbirOr48INT ; Align 34379 296 162 ; Align 34624 350 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr43PSE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 96 -> 279 Target range: 36572 -> 37655 97 : MetAsnAlaAlaIleAspAspTrpSerSerValSerLeuLysLysGluSerArgLeuThr : 116 |||!:! ! !.!!|||||||||:!!..! !!:!! !:!!! !..!|||! !||| MetSerGlnIlePheAspAspTrpAlaGlu---ProIleProGluValAspArgHisThr 36573 : ATGAGCCAAATATTCGACGACTGGGCGGAA---CCAATCCCGGAGGTGGATCGCCACACG : 36627 117 : MetMetAlaTyrAlaArgIleGluArgLeuValSerLeuThrAsnLeuThrLeuGlyGly : 136 |||:!! ! !|||!:!|||...|||:!!:!!|||:!!..! !! !! !||| ! ! MetLeuLysThrAlaLysIleSerArgMetIleSerIleValCysSerIleLeuThrTyr 36628 : ATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTCTGTTCTATCCTGACGTAT : 36687 137 : ValGlyPheValLeuPhePheAlaSerValPheLeuSerAsnLysProLysValAlaThr : 156 ||| .!.|||||| !||| !|||:!! :!!!!!!:!!.. !:!! !.!!:!! Val---MetValLeuAlaPheLeuSerLeuGlnIleTrpSerSerMetGlnAsnThrSer 36688 : GTC---ATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGCAGCATGCAAAACACCTCG : 36744 157 : AsnAspThrThrTrpAsnPheValLeuProSerThrCysLeuTyrLysGlyValSerTyr : 176 .!. !!.!..! ! ....!.:!!:!!|||:!!|||! !! !||| ! ! !!.! ! GluPheAsnValGlyGlyLeuLeuIleProAlaThrPheProTyrAspThrAsnLysSer 36745 : GAGTTCAACGTAGGAGGACTACTTATCCCGGCCACATTTCCATACGACACGAATAAAAGT : 36804 177 : SerMetPheLysAlaLeuPheAlaIleGlnValIleGlnGlyAlaIleIleIleIleSer : 196 !!! !:!:!! ! !!:: ! !||| !!:!: ! !!.!:!:! ! |||!!! ProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCys 36805 : CCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGT : 36864 197 : GluCysAlaTyrAspSerPhePhePheAsnIleIleMetHisLeuCysGlyGlnLeuGlu : 216 ! ! !..!!:!|||!!!||| !! ! !:!!:!::!:|||:!!|||||||||||| TyrSerCysPheAspThrPheValAlaValLeuValLeuHisIleCysGlyGlnLeuThr 36865 : TATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACT : 36924 217 : LeuLeuArgIle<-><->GlnPheLeuAlaPheAsnGlnLysHisAsnAspLysThrHis : 234 :!!||||||||| :!! !|||||| !!.. !! ! ! :!!:!! ! !:! ! ValLeuArgIleAlaLeuGluAsnLeuAlaAsnThrThrIleLysAspAsnTyrSerLys 36925 : GTTCTCCGCATTGCCCTCGAGAATCTTGCTAACACGACAATAAAAGACAACTACAGCAAG : 36984 235 : AsnGlyAsnIleLeuArgLeuLeuValLysArgHisCysHisLeuIle{Al} >>>> T : 251 ! !.!. !||| !!! !:!!||| ! |||!!. !!!.|||.!!{ } PheGlnGluArgLeuGlyTyrIleValHisArgGlnAsnGlnLeuPhe{Ar}++ 36985 : TTCCAAGAACGATTAGGATACATTGTGCACAGGCAGAATCAATTGTTC{AG}gt...... : 37039 252 : arget Intron 1 >>>> {a}LeuThrLysAsnIleGluAspAlaPheAsnIleAsn : 263 534 bp {!} !.!! !! :!:||||||..!|||||||||! ++{g}TyrAlaValIleValGluAspCysPheAsnIleMet 37040 : ...................ag{g}taCGCTGTGATAGTGGAAGATTGCTTCAACATCATG : 37605 264 : IleLeuLeuArgLeuLeuIleIleSerValValIleAlaAlaSerGly : 279 :!:|||:!!!:! !|||!!: !!!!!.!:!!:!!..! !!!!||| LeuLeuValGlnThrLeuMetCysThrAlaMetLeuCysMetThrGly 37606 : CTGCTCGTTCAAACTTTAATGTGCACCGCCATGCTCTGTATGACTGGA : 37655 vulgar: CbirOr43PSE 96 279 . KQ414804.1 36572 37655 + 105 M 10 30 G 1 0 M 30 90 G 1 0 M 82 246 G 0 6 M 30 90 S 0 2 5 0 2 I 0 530 3 0 2 S 1 1 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36573 37655 105 + . gene_id 1 ; sequence CbirOr43PSE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 36573 37036 . + . KQ414804.1 exonerate:protein2genome:local exon 36573 37036 . + . insertions 6 ; deletions 2 KQ414804.1 exonerate:protein2genome:local splice5 37037 37038 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 37037 37570 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 37569 37570 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 37571 37655 . + . KQ414804.1 exonerate:protein2genome:local exon 37571 37655 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36573 37655 105 + . alignment_id 1 ; Query CbirOr43PSE ; Align 36573 97 30 ; Align 36603 108 90 ; Align 36693 139 246 ; Align 36945 221 90 ; Align 37572 252 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr45 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 232 -> 288 Target range: 22890 -> 23058 233 : AspValThrSerSerArgAlaTyrAspArgPheAsnIleLeuIleGlnArgHisIleTyr : 252 !!::!! !|||..!!:!..!||| !!:!|||!!.! !! !||||||!:!||| GluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAla 22891 : GAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCA : 22948 253 : LeuIleHisIleValLysGlnLeuAlaGluThrIleSerPheIleLeuLeuThrGlnLeu : 272 ||||||.!..!! ! ! !|||! !|||..!.!!!!! ! |||:!!||| !|||:!! LeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleValLeuGlyGlnVal 22949 : CTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTC : 23008 273 : PheIleSerSerIleLeuLeuCysIleMetGlyPheGlnLeuIleLeu : 288 .!.!!:||||||||||||:!!|||.!!!!:|||!:!|||:!!:!!||| LeuMetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeu 23009 : CTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTG : 23058 vulgar: CbirOr45 232 288 . KQ414828.1 22890 23058 + 104 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22891 23058 104 + . gene_id 1 ; sequence CbirOr45 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 22891 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22891 23058 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22891 23058 104 + . alignment_id 1 ; Query CbirOr45 ; Align 22891 233 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr54NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 312 -> 380 Target range: 258330 -> 258624 313 : HisLeuPheValTyrCysTyrValGlyGluIleLeuLeuValGln >>>> Target : 328 ::::::|||||| ||||||:!!|||||||||||| !! !||| 9 AsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluGln++ 258331 : aatatttttgtaatatgttACATAGGTGAAATATTAACAGAACAGgt........... : 258378 329 : Intron 1 >>>> SerThrGlyMetGlyPheSerAlaTyrGluSerAsnTrpPhe : 341 0 bp !!!! ! !:!:||| ! !!.!||| !!!!:!!|||!:! ++CysLysLysValGlyAspValValTyrMetThrAspTrpTyr 258379 : ..............agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTAT : 258505 342 : AsnIleProGlyLysGluAlaArgAsnLeuLeuPheIleMetHisArgSerThrIleP : 361 !!:!!|||! !|||..! !! !:!!|||:!!!!.:!!!!: ||||||!:!:!: TyrLeuProAspLysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValV 258506 : TATCTACCTGACAAAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGG : 258565 362 : roLeuCysLeuThrAlaGlyLysPheGlyThrPheSerLeuGlnMetPheSerThrIl : 380 !:!! :!!||||||||||||||| ...|||:!! ! ! |||||| !:! alValGlnIleThrAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAspVa 258566 : TCGTTCAAATCACCGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATGT : 258622 381 : e : 380 : l 258623 : G : 258624 vulgar: CbirOr54NTE 312 380 . KQ414889.1 258330 258624 + 112 M 15 45 5 0 2 I 0 86 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258331 258624 112 + . gene_id 1 ; sequence CbirOr54NTE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 258331 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258331 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258331 258624 112 + . alignment_id 1 ; Query CbirOr54NTE ; Align 258331 313 45 ; Align 258466 328 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 311 -> 362 Target range: 292389 -> 292542 312 : GlnSerAspAlaLeuSerPheAlaIleTyrAspCysAsnTrpCysAsnPheProProA : 331 |||.!!..!! !:!!:!! !||| !|||||| .!.|||! !|||.!.||| !. GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 332 : snAspValArgAspLeuAlaPheIleMetIleLysThrAsnIleProIleArgLeuTh : 350 .. ! !.!||||||:!!!.!.!.:!::!: !! !|||!!. !||||||!:!||||| rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 351 : rAlaGlyLysPhePheTyrValThrLeuThrThrPhe : 362 ||||||||||.!.||| !:!!:!!|||!.!|||||| rAlaGlyLysIlePheValLeuSerLeuAsnThrPhe 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTT : 292542 vulgar: CbirOr51 311 362 . KQ414889.1 292389 292542 + 114 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 292542 114 + . gene_id 1 ; sequence CbirOr51 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292390 292542 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292542 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 292542 114 + . alignment_id 1 ; Query CbirOr51 ; Align 292390 312 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 311 -> 365 Target range: 206239 -> 206401 312 : GlnSerAspAlaLeuSerPheAlaIleTyrAspCysAsnTrpCysAsnPheProProA : 331 |||!:! !!!.!:!!.!!!!..!! !! ! ||||||! !..!.!!||| !! GlnAsnHisValValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnA 206240 : CAGAACCACGTCGTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACA : 206297 332 : snAspValArgAspLeuAlaPheIleMetIleLysThrAsnIleProIleArgLeuTh : 350 .. !!!.!|||..!:!! !.!.|||!!: !! !:!!||| !||||||!:!||||| rgHisAlaArgSerMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuTh 206298 : GACATGCGCGCTCTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAAC : 206354 351 : rAlaGlyLysPhePheTyrValThrLeuThrThrPheThrAspIle : 365 ||||||||||.!.||| ! :!!:!!|||.!!!:!|||||||||:!! rAlaGlyLysMetPheGluMetSerLeuAlaSerPheThrAspVal 206355 : AGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTCACCGATGTA : 206401 vulgar: CbirOr51 311 365 . KQ414889.1 206239 206401 + 102 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206240 206401 102 + . gene_id 2 ; sequence CbirOr51 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206240 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206240 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206240 206401 102 + . alignment_id 2 ; Query CbirOr51 ; Align 206240 312 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr51 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 311 -> 370 Target range: 297641 -> 297818 312 : GlnSerAspAlaLeuSerPheAlaIleTyrAspCysAsnTrpCysAsnPheProProA : 331 |||:!!!!: !!!!.!! !||| !|||:!! !.!.|||! !|||!!.||||||| GlnAlaGluLysPheGlyAsnAlaAlaTyrAsnIleGluTrpTyrAsnLeuProProA 297642 : CAGGCTGAAAAATTCGGCAATGCAGCTTATAACATCGAATGGTACAACTTACCGCCAA : 297699 332 : snAspValArgAspLeuAlaPheIleMetIleLysThrAsnIleProIleArgLeuTh : 350 || !.!! !||||||!.!!!.!!:!!: !! !.!!!!..!!||| |||||||| snArgAlaLeuAspLeuValLeuMetIleGlyIleAlaLysPheProProArgLeuTh 297700 : ACAGGGCTCTCGATCTGGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCAC : 297756 351 : rAlaGlyLysPhePheTyrValThrLeuThrThrPheThrAspIleLeuLysThrAla : 369 |...||||||...||| ::::!!:!!!.!||||||!:!! !:!!! !!:: ::: rGlyGlyLysIlePheAspIleSerIleAsnThrPheSerAlaValArgArgGlnSer 297757 : AggtggaaaaatattcgatatatCGATAAACACGTTCAGTGCCGTACGTAgacaaagt : 297813 370 : Val : 370 ::: Leu 297814 : tta : 297818 vulgar: CbirOr51 311 370 . KQ414889.1 297641 297818 + 102 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297642 297818 102 + . gene_id 3 ; sequence CbirOr51 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297642 297818 . + . KQ414889.1 exonerate:protein2genome:local exon 297642 297818 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297642 297818 102 + . alignment_id 3 ; Query CbirOr51 ; Align 297642 312 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr53PN(F) Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 300 -> 383 Target range: 291389 -> 292551 301 : ValAlaMetValPhePheValValHisValThrTyrThrMetLeuHisIlePheValT : 320 :!!!.!!!::!! !:!|||..!! !:!!|||! ! !! !!!:!!|||.!.:!!! IleGlyIleLeuThrTyrValThrLeuLeuThrSerPheThrPheAsnIleLeuIleP 291390 : ATCGGGATATTAACATACGTCACTCTCCTCACTTCTTTCACTTTCAACATACTGATAT : 291447 321 : yrCysTyrValGlyGluGlnLeuLeuIleGlu >>>> Target Intron 1 >>> : 331 :!|||||||||||||||! |||||| !:!! 913 bp heCysTyrValGlyGluLeuLeuLeuGlyGln++ 291448 : TCTGTTACGTTGGCGAACTTCTTCTTGGACAGgt........................ : 291482 332 : > SerThrGlyLeuAlaGlnSerAlaTyrAspCysGluTrpTyrGluLeuProSerL : 349 .!!!:!! !:!!|||!!.:!!:!!|||||| |||||||||.!.||||||!!!: ++GlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 291483 : .agGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 350 : ysLysAlaIleCysLeuIleIleIleIleIleArgAlaAsnValSerPheLysIleTh : 368 :!|||||| ! !:!!:!!:!::!::!! !! !.!!!!. ! !!.!!|||:!!|| rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 369 : rAlaGlyLysPheSerSerPheSerLeuGluLeuPheGlyThrIle : 383 ||||||||||.!.! ! !.!!||||||.!. !||||||.!!:!! rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaVal 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTA : 292551 vulgar: CbirOr53PN(F) 300 383 . KQ414889.1 291389 292551 + 149 M 30 90 5 0 2 I 0 909 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291390 292551 149 + . gene_id 1 ; sequence CbirOr53PN(F) ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291390 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291390 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292551 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291390 292551 149 + . alignment_id 1 ; Query CbirOr53PN(F) ; Align 291390 301 90 ; Align 292393 331 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr53PN(F) Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 329 -> 383 Target range: 234985 -> 235147 330 : GluSerThrGlyLeuAlaGlnSerAlaTyrAspCysGluTrpTyrGluLeuProSerL : 349 :!!!!!||| !:!!!.!:!!!.!!.!||| !|||||||||..!|||||| !| GlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProHisL 234986 : CAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATA : 235043 350 : ysLysAlaIleCysLeuIleIleIleIleIleArgAlaAsnValSerPheLysIleTh : 368 ||! |||:!! !!|||:!!!!:|||||| !|||:!!!:!:!! !.!.|||||||| ysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleTh 235044 : AAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCAC : 235100 369 : rAlaGlyLysPheSerSerPheSerLeuGluLeuPheGlyThrIle : 383 ||||||||||||| !..!.!.|||:!!! ! !|||||| !:!: rAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235101 : CGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: CbirOr53PN(F) 329 383 . KQ414889.1 234985 235147 + 120 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234986 235147 120 + . gene_id 2 ; sequence CbirOr53PN(F) ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234986 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234986 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234986 235147 120 + . alignment_id 2 ; Query CbirOr53PN(F) ; Align 234986 330 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr53PN(F) Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 333 -> 387 Target range: 238637 -> 238799 334 : LeuAlaGlnSerAlaTyrAspCysGluTrpTyrGluLeuProSerLysLysAlaIleC : 353 :!!!.!:!! !!.!||| !!:|||||| ! ||||||..!!:!!:! !:!! ValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuA 238638 : GTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCG : 238695 354 : ysLeuIleIleIleIleIleArgAlaAsnValSerPheLysIleThrAlaGlyLysPh : 372 !||||||:!:||||||! !|||:!!|||||| ! !!|||:!!|||||||||||| ! spLeuIleLeuIleIleLysArgSerAsnValValValLysValThrAlaGlyLysVa 238696 : ATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCACCGCTGGAAAAGT : 238752 373 : eSerSerPheSerLeuGluLeuPheGlyThrIleLeuLysThrSer : 387 ! ! !.!.|||||| ! !|||||| !:!! !:!!|||!:! lLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238753 : ATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238799 vulgar: CbirOr53PN(F) 333 387 . KQ414889.1 238637 238799 + 111 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238638 238799 111 + . gene_id 3 ; sequence CbirOr53PN(F) ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238638 238799 . + . KQ414889.1 exonerate:protein2genome:local exon 238638 238799 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238638 238799 111 + . alignment_id 3 ; Query CbirOr53PN(F) ; Align 238638 334 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr53PN(F) Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 333 -> 387 Target range: 254283 -> 254445 334 : LeuAlaGlnSerAlaTyrAspCysGluTrpTyrGluLeuProSerLysLysAlaIleC : 353 :!!!.!:!! !!.!||| !!:|||||| ! ||||||..!!:!!:! !:!! ValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuA 254284 : GTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCG : 254341 354 : ysLeuIleIleIleIleIleArgAlaAsnValSerPheLysIleThrAlaGlyLysPh : 372 !||||||:!:||||||! !|||:!!|||||| ! !!:!!|||||||||||||||.. spLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLysIl 254342 : ATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaaaat : 254398 373 : eSerSerPheSerLeuGluLeuPheGlyThrIleLeuLysThrSer : 387 . ...|||||| ! !|||||| !:!! !:!!|||!:! ePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 254399 : attccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 254445 vulgar: CbirOr53PN(F) 333 387 . KQ414889.1 254283 254445 + 111 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254284 254445 111 + . gene_id 4 ; sequence CbirOr53PN(F) ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254284 254445 . + . KQ414889.1 exonerate:protein2genome:local exon 254284 254445 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254284 254445 111 + . alignment_id 4 ; Query CbirOr53PN(F) ; Align 254284 334 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr53PN(F) Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 333 -> 386 Target range: 244667 -> 244826 334 : LeuAlaGlnSerAlaTyrAspCysGluTrpTyrGluLeuProSerLysLysAlaIleC : 353 :!!!.!:!! !!.!||| !!:|||||| ! ||||||..!!:!!:! !:!! ValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuA 244668 : GTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCG : 244725 354 : ysLeuIleIleIleIleIleArgAlaAsnValSerPheLysIleThrAlaGlyLysPh : 372 !||||||:!:||||||! !|||:!!|||:!! ! !!:!!||||||||||||||| ! spLeuIleLeuIleIleLysArgSerAsnMetValValGluIleThrAlaGlyLysVa 244726 : ATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCACCGCTGGAAAAGT : 244782 373 : eSerSerPheSerLeuGluLeuPheGlyThrIleLeuLysThr : 386 ! ! !.!.|||||| ! !|||||| !:!! !:!!||| lLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThr 244783 : ATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 244826 vulgar: CbirOr53PN(F) 333 386 . KQ414889.1 244667 244826 + 104 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244668 244826 104 + . gene_id 5 ; sequence CbirOr53PN(F) ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244668 244826 . + . KQ414889.1 exonerate:protein2genome:local exon 244668 244826 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244668 244826 104 + . alignment_id 5 ; Query CbirOr53PN(F) ; Align 244668 334 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr53PN(F) Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 336 -> 390 Target range: 280294 -> 280456 337 : SerAlaTyrAspCysGluTrpTyrGluLeuProSerLysLysAlaIleCysLeuIleI : 356 |||.!!||| !!!:||||||...||||||.!!||||||||| ! !!||||||: SerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleL 280295 : TCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATAC : 280352 357 : leIleIleIleArgAlaAsnValSerPheLysIleThrAlaGlyLysPheSerSerPh : 375 !:|||.!! ! !:!!||| !|||.!.|||:!!||||||||||||.!!! !..!.! euIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLe 280353 : TGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCT : 280409 376 : eSerLeuGluLeuPheGlyThrIleLeuLysThrSerAlaGlyTyr : 390 !||||||... !||| !!!:!:!: !! ! !!:! !..!||| uSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 280410 : CTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 280456 vulgar: CbirOr53PN(F) 336 390 . KQ414889.1 280294 280456 + 104 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280295 280456 104 + . gene_id 6 ; sequence CbirOr53PN(F) ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280295 280456 . + . KQ414889.1 exonerate:protein2genome:local exon 280295 280456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280295 280456 104 + . alignment_id 6 ; Query CbirOr53PN(F) ; Align 280295 337 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr53PN(F) Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 337 -> 383 Target range: 258486 -> 258624 338 : AlaTyrAspCysGluTrpTyrGluLeuProSerLysLysAlaIleCysLeuIleIleI : 357 !.!||| !!:|||||| ! ||||||..!|||!:! !:!! !||||||:!:: ValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLeuV 258487 : GTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTTGG : 258544 358 : leIleIleArgAlaAsnValSerPheLysIleThrAlaGlyLysPheSerSerPheSe : 376 !!||| !|||:!!!:!||| ! !!:!!|||||||||||||||||| ...|| alIleAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePheHisMetSe 258545 : TAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatGTC : 258601 377 : rLeuGluLeuPheGlyThrIle : 383 |:!! ! !|||.!! !:!: rIleTyrThrPheSerAspVal 258602 : CATTTACACATTCAGCGATGTG : 258624 vulgar: CbirOr53PN(F) 337 383 . KQ414889.1 258486 258624 + 100 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258487 258624 100 + . gene_id 7 ; sequence CbirOr53PN(F) ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 258487 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258487 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258487 258624 100 + . alignment_id 7 ; Query CbirOr53PN(F) ; Align 258487 338 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr47 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 323 -> 391 Target range: 301880 -> 302166 324 : GluGluValAlaLeuSerIleTyrTyrCysAlaTrpTyrAsnLeuProAlaLysValA : 343 ...:!!:!!!.!! !:!! ||| ! !! !||||||||||||||||||||| !| SerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgA 301881 : AGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAG : 301938 344 : laLysAsnLeuValPheIleMetMetTrpThrGlnLeuProIleLysLeuGlnAlaGl : 362 || ! :!!|||:!!.!.:!!! :!! :!!|||! !||| |||||| !||||| laTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGl 301939 : CATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGG : 301995 363 : yAsnPheIleIleValAspLeuValThrPheMetSer >>>> Target Intron : 375 |!!..!.||| !:!!..!||| !||||||! ||| 82 bp yLysIleIleAspLeuSerLeuAsnThrPheSerSer++ 301996 : GAAAATAATCGACTTATCCTTGAATACATTCAGCTCTgt................... : 302036 376 : 1 >>>> IleIleLysThrSerIleSerTyrLeuSerValLeuArgValMetLeuAs : 391 :!::!:|||||||||:!: !||||||!:!:!!||||||..!:!: !|| ++ValValLysThrSerValValTyrLeuAsnLeuLeuArgThrValThrAs 302037 : ......agGTGGTGAAAACATCGGTGGTGTACTTGAATTTACTGCGAACAGTTACAAA : 302164 392 : n : 391 | n 302165 : C : 302166 vulgar: CbirOr47 323 391 . KQ414889.1 301880 302166 + 121 M 51 153 5 0 2 I 0 78 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301881 302166 121 + . gene_id 1 ; sequence CbirOr47 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301881 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301881 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302166 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302166 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301881 302166 121 + . alignment_id 1 ; Query CbirOr47 ; Align 301881 324 153 ; Align 302116 375 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr55 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 191 Query range: 298 -> 386 Target range: 807323 -> 807587 299 : ValIleTyrValLeuLeuGlnLeuTyrLeuTyrCysTyrIleGlyGluArgLeuLeuV : 318 :!!:!: !:!!|||:!!|||||||||||||||..!||| |||.!.! !||| ! MetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluS 807324 : ATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGT : 807381 319 : alGluSerThrGlnIleAlaTyrAlaAlaTyrAspCysSerTrpTyrAspLeuSerAl : 337 !..!!!! !:!!|||||| ! ||||||||||||! ! !|||||| !! ! !!. erArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGl 807382 : CGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGG : 807438 338 : aTyrGluValArgSerLeuIleIleIleIleTyrArgAlaArgSerProLeuThrIle : 356 !:!!! !!.!|||..!|||:!!:!:||||||:!!|||!.!!.!||||||! ! !||| yHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIle 807439 : GCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATA : 807495 357 : ThrAlaGlyArgPheCysSerPheAsnArgGluLeuPheSerGluValLeuLysArgS : 376 |||||||||!:!||| ! !!.!.|||! ! !|||!.!|||:!!|||||| !| ThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaS 807496 : ACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTT : 807555 377 : erValAlaTyrMetSerCysLeuTyrAlaMet : 386 ||! !:!!|||:!!||| :!! ! !.!||| erGlySerTyrLeuSerValMetLysValMet 807556 : CTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: CbirOr55 298 386 . KQ414940.1 807323 807587 + 191 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807324 807587 191 + . gene_id 1 ; sequence CbirOr55 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807324 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807324 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807324 807587 191 + . alignment_id 1 ; Query CbirOr55 ; Align 807324 299 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr51 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 508 Query range: 4 -> 381 Target range: 805820 -> 807593 5 : AsnLysAsnAlaAlaTyrGluTrpSerSerTyrLysThrLeuAlaTrpProValGlyA : 24 ..!:!!!!. !||| !|||!:: ! ! ! :!!|||:!! ! ! !:!!||| GlyGluLysIleAlaArgGluPheLeuValGlnGluThrValLeuArgIleIleGlyI 805821 : GGCGAGAAGATCGCTCGCGAGTTCCTCGTGCAGGAAACGGTGTTGAGAATAATCGGGA : 805878 25 : laTrpProIleGluAspAspThrLeuTyrSerArgMetArgTrpSerPheAlaIleIl : 43 !||||||! !...! !:!!!.!!!! |||! ! ||||||!!!|||||||||:! leTrpProSerSerValAsnAsnPheAlaSerIleGlyArgTrpThrPheAlaIleLe 805879 : TTTGGCCGAGCAGCGTTAACAATTTCGCGTCCATCGGTCGATGGACGTTCGCCATCTT : 805935 44 : eSerGlu >>>> Target Intron 1 >>>> IleLeuLeuValAlaGluLeuL : 53 :!!!.!. 72 bp ||| ! !:!! !...|||! uThrHis++ ++IleSerThrIleTyrSerLeuS 805936 : GACGCATgt.........................agATCAGTACTATCTACAGCCTGT : 806037 54 : euIleGluValTyrLeuAlaCysGluAsnSerAlaGluAsnProIleAspThrTyrVa : 72 !:!!|||||||||! ! !||| !:!! !!!::!! !!!!:|||.!!!:!|| erLeuGluValTyrArgHisCysLeuAsp---LeuAspAspThrMetAspAlaPheVa 806038 : CTCTCGAAGTCTATCGTCATTGTCTGGAC---CTCGACGACACGATGGACGCGTTCGT : 806091 73 : lValThrAlaSerAlaIleLeuValPheValLysLeuIleLeuLeuArgIleArgArg : 91 |:!! ! !|||:!!:!::!! !.!. !||||||:!!:!!||||||!!:!:! ! lMetAspLeuSerSerValIleSerLeuSerLysLeuLeuValLeuArgMetLysSer 806092 : CATGGATCTGTCGTCGGTGATCAGTCTGTCCAAGCTGCTCGTTTTACGGATGAAATCG : 806148 92 : SerThrLeuSerLeuAsnIleSerSerAlaIleGlnAspTrpCysSerIleLysAspT : 111 !.! ! !! ! ! !:!!..!||| !:!!:!!|||||| !:!:!! ! !!: LysHisThrTyrAlaLeuValAspSerIleValLysAspTrpThrAsnValAspHisS 806149 : AAACACACTTACGCTCTCGTCGATTCGATCGTCAAAGACTGGACGAACGTCGATCATT : 806208 112 : hrLysSerHisGluIleMetIleGlnTyrAlaArgMetAlaArgIleIleSerLeuSe : 130 !!::: !.!....||||||! :!!||| !!.!! !.!||||||:!!||||||!! erArgHisGluArgIleMetThrGluTyrPheAsnLysGlyArgIleValSerLeuTh 806209 : CCCGCCACGAACGCATCATGACGGAGTACTTCAACAAAGGAAGAATCGTTTCGTTGAC : 806265 131 : rLeuPheTyrSerGlyPhePheAla >>>> Target Intron 2 >>>> PheI : 140 !:!!.!!||| !|||!:! !:!! 133 bp : rIleLeuTyrLeuGlyTyrAlaSer+- ++LysL 806266 : GATACTCTACCTTGGATACGCCTCTgg.........................agAAGC : 806428 141 : leLeuTyrMetLeuArgLeuLeuProLeuValSerGlyThrAsnGluArgThrPheTy : 159 !!! ! ! ! !!.!! ! ! ! !..!!:!! !||| ... ...::::: euHisSerTrpAlaAsnSerThrValAsnThrAsnAspThrAlaArgLeuAsnTyrPh 806429 : TCCACAGTTGGGCGAATTCAACGGTGAACACGAACGATACAGCGagattgaattattt : 806485 160 : rLeuProThrSerCysLeuPheGluSerIleSerThrLeuGlnTyrIlePheLeuThr : 178 :||| !!||| !|||:!!|||! !!:!! !! !! !!!.:!!:!!! !:!! ! eLeuAlaThrHisCysValPheGlyProLeuProLeuGlnHisHisValCysValLeu 806486 : cttgGCCACGCACTGCGTGTTCGGCCCTTTACCGTTGCAGCATCACGTCTGCGTGTTA : 806542 179 : LeuTyrGlnIleIleGlnLeuPheIleThrTyrAlaGlyAsnCysCysThrGluGlyM : 198 ||| ||| !!:!!.:!!|||.!!!.! !!.!!.!:!!||| !!!.!!!:|||: LeuLeuGlnGlyMetHisIlePhePheAsnAlaValAlaHisCysGlyAsnAspGlyL 806543 : CTGCTGCAAGGGATGCACATTTTCTTCAACGCCGTGGCTCACTGCGGCAACGACGGCC : 806602 199 : etPheIleGlyValThrLeuHisLeuCysGlyGlnLeuGlnLeuLeuMetIleAspIl : 217 !:|||.!!.!!:!!|||:!!|||||||||||||||!!!:!!:!!|||! !!!::!!:! euPhePheSerLeuThrMetHisLeuCysGlyGlnPheGluIleLeuLysMetAsnLe 806603 : TCTTCTTCAGCCTGACGATGCATCTGTGCGGTCAGTTTGAAATTCTGAAGATGAATCT : 806659 218 : eArgArgIleAspTrpArgAsn<->LysArgGlyAsnIleValGluLysLeuValVal : 235 : !..!|||!!:!::..! !! !!!!. !:!!! |||||| ! uAlaGluIleGluPheGluAlaIleAlaCysArgLysArgIleGlyValLeuValLys 806660 : GGCGGAGATCGAGTTCGAGGCGATCGCTTGTCGGAAGCGAATCGGCGTTCTCGTGAAA : 806716 236 : ArgHisArgGlnLeuIleArgLeuThrGluThrIleGluAspSerTyrAsnIleIleI : 255 |||||| !!:!!||| !||||||.!. !:!!|||.!.|||!:!!:!!!:|||| ArgHisCysLysLeuAlaValLeuThrAsnAspLeuGluGlnSerPheSerMetIleI 806717 : CGACACTGCAAACTGGCGGTGTTGACCAACGATCTCGAGCAGAGCTTCAGTATGATTA : 806776 256 : leLeuAlaGlnIleLeuValSerAlaIleLeuIleCysValThr{G} >>>> Targ : 270 |||||!.!|||:!!:!!:!!||||||:!:|||||||||||| !{|} leLeuValGlnLeuMetMetSerAlaLeuLeuIleCysValGlu{G}++ 806777 : TTCTGGTGCAACTCATGATGAGTGCGTTGCTAATTTGCGTAGAA{G}gt......... : 806824 271 : et Intron 3 >>>> {ly}PheGlyPheIleGluSerLeuHisIleHisAspThr : 282 437 bp {||}|||! !|||:!:! :!!||| !! ! |||!.! ++{ly}PheValPheLeuValAlaLeuSerThrLysAspAsn 806825 : ................ag{GT}TTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAAC : 807294 283 : ValMetThrValLysSerAlaValIleMetPheValMetLeuLeuGlnSerPheLeuT : 302 ||| .!!:!!!:!||| !|||:!:||| ! ..!:!!|||:!!||| !!:!|||| ValAlaAlaLeuArgSerPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuT 807295 : GTTGCAGCATTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTT : 807354 303 : yrSerTyrAlaGlyAspAsnLeuArgAspGlnSerAspAlaLeuSerPheAlaIleTy : 321 ||:!!|||||||||:!!!..|||..!...!:!!!!!!:! !:!!:!! ||| !|| yrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTy 807355 : ACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTA : 807411 322 : rAspCysAsnTrpCysAsnPheProProAsnAspValArgAspLeuAlaPheIleMet : 340 ||||! ! !|||! !..!! !! ! !:!!! !.!||||||||| !!!.|||!!: rAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIle 807412 : TGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATC : 807468 341 : IleLysThrAsnIleProIleArgLeuThrAlaGlyLysPhePheTyrValThrLeuT : 360 !::! !||| ||| !|||:!!||||||||||||||| !! :!!!.!||| HisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuP 807469 : CATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTT : 807528 361 : hrThrPheThrAspIleLeuLysThrAlaValSerTyrLeuSerAlaLeuArgValMe : 379 !||||||! !!!:|||||||||.!!:!!! !||||||||||||!.!:!!!:!||||| heThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSerValMetLysValMe 807529 : TCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAAT : 807585 380 : tThrGlu : 381 |! !!!: tMetAsp 807586 : GATGGAC : 807593 vulgar: CbirOr51 4 381 . KQ414940.1 805820 807593 + 508 M 41 123 5 0 2 I 0 68 3 0 2 M 17 51 G 1 0 M 75 225 5 0 2 I 0 129 3 0 2 M 86 258 G 0 3 M 45 135 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 805821 807593 508 + . gene_id 1 ; sequence CbirOr51 ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 805821 805943 . + . KQ414940.1 exonerate:protein2genome:local exon 805821 805943 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 805944 805945 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 805944 806015 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 806014 806015 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 806016 806291 . + . KQ414940.1 exonerate:protein2genome:local exon 806016 806291 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local splice5 806292 806293 . + . intron_id 2 ; splice_site "GG" KQ414940.1 exonerate:protein2genome:local intron 806292 806424 . + . intron_id 2 KQ414940.1 exonerate:protein2genome:local splice3 806423 806424 . + . intron_id 1 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 806425 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806425 806821 . + . insertions 3 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 3 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807258 . + . intron_id 3 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 2 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 805821 807593 508 + . alignment_id 1 ; Query CbirOr51 ; Align 805821 5 123 ; Align 806016 46 51 ; Align 806067 64 225 ; Align 806425 139 258 ; Align 806686 225 135 ; Align 807261 271 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr46 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 365 Query range: 136 -> 394 Target range: 806391 -> 807593 137 : TyrValAlaValLeuIleTyrSerPheIleProLeuLeuGlyAspGluGlnAspAsnV : 156 ||| ! ! !||| !||||||:!! ! !||| !..! ! !:!!:::. TyrArgLeuProLeuAlaLeuSerPheVal***LysLeuHisSerTrpAlaAsnSerT 806392 : TATCGCTTACCACTTGCGCTTTCTTTCGTTTAGAAGCTCCACAGTTGGGCGAATTCAA : 806449 157 : alValAsnGluThrAsnGluGluAlaValLeuGluTyrProIleProSerArgCysAl : 175 .!|||||| ||||||!!: !||| |||...||| ::: !!!!!!.!|||!. hrValAsn---ThrAsnAspThrAlaArgLeuAsnTyrPheLeuAlaThrHisCysVa 806450 : CGGTGAAC---ACGAACGATACAGCGagattgaattatttcttgGCCACGCACTGCGT : 806503 176 : aLeuGlnTyrLeuAsnAlaProMetSerMetTyrGlnIleTyrCysPheIleGluPhe : 194 !!!! !||| |||:!!..! :!! ! ! .!.:!::!! lPheGlyProLeu------ProLeuGlnHisHisValCysValLeuLeuLeuGlnGly 806504 : GTTCGGCCCTTTA------CCGTTGCAGCATCACGTCTGCGTGTTACTGCTGCAAGGG : 806554 195 : IleValLeuLeuIleThrCysThrCysAsnHisGlyAsnAspSerLeuPheLeuAsnI : 214 !!: !:!!!!!.!!!.!..!..!..!:!! !|||||||||.!!||||||!!!!:!: MetHisIlePhePheAsnAlaValAlaHisCysGlyAsnAspGlyLeuPhePheSerL 806555 : ATGCACATTTTCTTCAACGCCGTGGCTCACTGCGGCAACGACGGCCTCTTCTTCAGCC : 806614 215 : leThrLeuHisValCysGlyGlnValLysIleLeuLysAlaAsnPheMetAspPheTh : 233 !:|||:!!|||:!!||||||||| !!:!!||||||||| !|||.!. !!!:.!! euThrMetHisLeuCysGlyGlnPheGluIleLeuLysMetAsnLeuAlaGluIleGl 806615 : TGACGATGCATCTGTGCGGTCAGTTTGAAATTCTGAAGATGAATCTGGCGGAGATCGA : 806671 234 : rValThrAsnLeuGlnValTyrAspHisPheAsnAlaLeuIleGlnArgHisAsnTyr : 252 ! !! ! :!! ! ! !...!!..!!.!|||:!::!!|||||| ! ! uPheGluAlaIleAlaCysArgLysArgIleGlyValLeuValLysArgHisCysLys 806672 : GTTCGAGGCGATCGCTTGTCGGAAGCGAATCGGCGTTCTCGTGAAACGACACTGCAAA : 806728 253 : LeuIleGlnLeuAlaLysLysLeuAlaAspThrIleSerPheIleLeuIleThrGlnL : 272 ||| !|||.!!!!. ! |||! !.!.!:!.!!|||.!.|||:!!:!:..!|||| LeuAlaValLeuThrAsnAspLeuGluGlnSerPheSerMetIleIleLeuValGlnL 806729 : CTGGCGGTGTTGACCAACGATCTCGAGCAGAGCTTCAGTATGATTATTCTGGTGCAAC : 806788 273 : euPheIleSerSerIleLeuLeuCysIleMet{G} >>>> Target Intron 1 : 283 ||.!.!!:|||:!!:!:|||:!!|||:!! {|} 437 bp euMetMetSerAlaLeuLeuIleCysValGlu{G}++ 806789 : TCATGATGAGTGCGTTGCTAATTTGCGTAGAA{G}gt..................... : 806824 284 : >>>> {ly}PheGlnPheIleLeuAlaLeuLysLeuAsnAspAlaValValMetGly : 299 {||}||| |||:!::!!||||||!.. !!!.||| !|||!.! ! ++{ly}PheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeu 806825 : ....ag{GT}TTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTG : 807306 300 : LysSerLeuThrValLeuCysThrPheLeuThrGlnLeuSerValTyrSerTyrValG : 319 !:!|||!!!..!:!!:!! |||!!.|||! !||||||! !:!!|||:!!|||!.!| ArgSerPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaG 807307 : AGGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGG : 807366 320 : lyAspTyrLeuLysSerGlnMetGluGluValGlyLeuPheSerTyrGlnAsnThrTr : 338 ||:!! |||:!!|||!:!! ||||||:!!!.!! ! !:!!|||.!.::! !|| lyAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTr 807367 : GCAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTG : 807423 339 : pTyrAsnLeuProGluLysIleMetLysAsnLeuIlePheIleIleMetArgAlaHis : 357 ||||..!! !! !! ! ! ! !:!:!!|||:!!!!.|||||| |||!.!:!! pTyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsn 807424 : GTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAAT : 807480 358 : TyrProValLysLeuGlnAlaGlySerPheIleValValAsnLeuAlaThrTyrMetS : 377 ! ||| !::::!! !||||||!.!|||:!! !:!!|||||| !|||!:!! !. SerProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysG 807481 : TCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGG : 807540 378 : erIleLeuArgThrSerIleSerTyrLeuSerValLeuArgIleMetValGlu : 394 .!||||||!:!.!!||| !|||||||||||||||:!!!:!:!!|||:!!!!: luIleLeuLysAlaSerGlySerTyrLeuSerValMetLysValMetMetAsp 807541 : AGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: CbirOr46 136 394 . KQ414940.1 806391 807593 + 365 M 22 66 G 1 0 M 20 60 G 2 0 M 101 303 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806392 807593 365 + . gene_id 1 ; sequence CbirOr46 ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 806392 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806392 806821 . + . insertions 0 ; deletions 3 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807258 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 806392 807593 365 + . alignment_id 1 ; Query CbirOr46 ; Align 806392 137 66 ; Align 806458 160 60 ; Align 806518 182 303 ; Align 807261 284 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr45 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 213 Query range: 282 -> 394 Target range: 807257 -> 807593 283 : GlyPheGlnLeuIleLeuSerLeuLysValAsnAspIleValMetThrThrLysSerP : 302 |||||| !!!:!::!!:!!|||!....!!!.|||! !||| .!! !!:!|||| GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 303 : heSerValLeuSerAlaPheLeuSerGlnLeuThrLeuTyrSerPheIleGlyAspTy : 321 || !:!!:!! !.!!!!.|||! !|||||| !||||||:!!!:! |||:!! heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 322 : rLeuLysSerGlnMetGluGluIleGlyLeuSerIleTyrArgSerSerTrpTyrAsp : 340 |||:!!|||!:!! |||||||||!.!! !:!! !||| !||| !|||||| ! rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 341 : TyrProArgLysLeuThrArgAsnMetIlePheValLeuMetArgThrGluSerProI : 360 ! !! ! !! ! !.!!|||:!!:!::!!!!.:!!:!! ||| !.!.|||||| CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 361 : leAlaLeuGlnAlaGlyAsnPheIleMetIleAsnLeuSerThrTyrMetSerIleLe : 379 ! !:!! !||||||!!.|||:!! !!!:||||||! !|||!:!! !..!||||| yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 380 : uLysThrSerAlaSerTyrLeuSerValLeuArgValMetIleGlu : 394 ||||.!!|||!.!|||||||||||||||:!!!:!||||||!!:!!: uLysAlaSerGlySerTyrLeuSerValMetLysValMetMetAsp 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: CbirOr45 282 394 . KQ414940.1 807257 807593 + 213 M 112 336 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807593 213 + . gene_id 1 ; sequence CbirOr45 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807593 213 + . alignment_id 1 ; Query CbirOr45 ; Align 807258 283 336 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr44 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 367 Query range: 163 -> 403 Target range: 806442 -> 807593 164 : AsnGlnIleAsnLysThrSerAspAspSerValLeuGluTyrProMetProSerArgC : 183 |||..!! !!.|||!:!||| :!! |||...||| ::: !!!!!!.!| AsnSerThrValAsnThrAsnAspThrAlaArgLeuAsnTyrPheLeuAlaThrHisC 806443 : AATTCAACGGTGAACACGAACGATACAGCGagattgaattatttcttgGCCACGCACT : 806500 184 : ysAlaLeuGluPhePheGluValProThrSerMetTyrArgIlePheCysLeuIleGl : 202 ||!.! ||| ! :!!||| !..! :!! ! ! ! ! |||:!::! ysVal------PheGlyProLeuProLeuGlnHisHisValCysValLeuLeuLeuGl 806501 : GCGTG------TTCGGCCCTTTACCGTTGCAGCATCACGTCTGCGTGTTACTGCTGCA : 806551 203 : uAlaIleAlaLeuValMetThrSerThrCysAsnHisGlyAsnAspThrMetPheLeu : 221 !!.!!!: !:!! !!.!.!.!:!!..!..!:!! !||||||||| !:!:|||!!! nGlyMetHisIlePhePheAsnAlaValAlaHisCysGlyAsnAspGlyLeuPhePhe 806552 : AGGGATGCACATTTTCTTCAACGCCGTGGCTCACTGCGGCAACGACGGCCTCTTCTTC : 806608 222 : AsnIleThrLeuHisIleCysGlyGlnValGluIleLeuLysThrHisPheIleAsnL : 241 !:!:!:|||:!!|||:!:||||||||| !!||||||||||||! !:!!.!. .!.: SerLeuThrMetHisLeuCysGlyGlnPheGluIleLeuLysMetAsnLeuAlaGluI 806609 : AGCCTGACGATGCATCTGTGCGGTCAGTTTGAAATTCTGAAGATGAATCTGGCGGAGA : 806668 242 : euAsnLeuSerAsnProAsnPheAsnAspHisLeuAsnThrLeuIleGlnArgHisHi : 260 !!.!.!!!..! ! !! !... ! !..:!!..!..!|||:!::!!|||||| leGluPheGluAlaIleAlaCysArgLysArgIleGlyValLeuValLysArgHisCy 806669 : TCGAGTTCGAGGCGATCGCTTGTCGGAAGCGAATCGGCGTTCTCGTGAAACGACACTG : 806725 261 : sHisLeuIleLysMetAlaLysLysLeuAlaGluThrIleSerSerIleLeuLeuThr : 279 ! ! ||| !:!!.!!!!. ! |||! !:!!!:!.!!|||! !|||:!!|||..! sLysLeuAlaValLeuThrAsnAspLeuGluGlnSerPheSerMetIleIleLeuVal 806726 : CAAACTGGCGGTGTTGACCAACGATCTCGAGCAGAGCTTCAGTATGATTATTCTGGTG : 806782 280 : GlnLeuPheIleSerSerValLeuIleCysIleMet{G} >>>> Target Intro : 292 ||||||.!.!!:|||:!!:!!|||||||||:!! {|} 437 bp GlnLeuMetMetSerAlaLeuLeuIleCysValGlu{G}++ 806783 : CAACTCATGATGAGTGCGTTGCTAATTTGCGTAGAA{G}gt................. : 806824 293 : n 1 >>>> {ly}PheGlnPheIleLeuAlaLeuLysValHisAsnValValMetMe : 307 {||}||| |||:!::!!||||||!....! ! :!! !||| ++{ly}PheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAl 806825 : ........ag{GT}TTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGC : 807303 308 : tGluLysSerValIleValGlnSerThrPheLeuThrGlnLeuSerLeuTyrSerPhe : 326 !!:!||| !!:!!:!!..! !|||!!.|||! !||||||! !||||||:!!!:! aLeuArgSerPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyr 807304 : ATTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTAC : 807360 327 : IleGlyAspTyrLeuLysSerGlnMetGluGluValGlyProSerIleTyrGlnSerS : 346 |||:!! |||:!!|||!:!! ||||||:!!!.!! !:!! !|||.!.||| AlaGlyAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerL 807361 : GCGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTC : 807420 347 : erTrpTyrArgPheProAlaGluMetMetLysAsnLeuValPheIleIleMetArgTh : 365 !|||||||||! !! !!.!.!. !:!:!!|||:!!!!.|||||| ||| euTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGl 807421 : TTTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGG : 807477 366 : rGluThrProValMetPheGlnAlaGlyAsnPheIleValIleAsnLeuSerThrTyr : 384 !.!.:!!||| ! .!. !||||||!!.|||:!! !!!:||||||! !|||!:! yAsnSerProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPhe 807478 : AAATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTC : 807534 385 : MetGlyIleLeuLysThrSerValSerTyrLeuSerValLeuArgValMetValGlu : 403 ! !! !|||||||||.!!|||! !|||||||||||||||:!!!:!||||||:!!!!: LysGluIleLeuLysAlaSerGlySerTyrLeuSerValMetLysValMetMetAsp 807535 : AAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: CbirOr44 163 403 . KQ414940.1 806442 807593 + 367 M 21 63 G 2 0 M 105 315 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806443 807593 367 + . gene_id 1 ; sequence CbirOr44 ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 806443 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806443 806821 . + . insertions 0 ; deletions 2 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807258 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 806443 807593 367 + . alignment_id 1 ; Query CbirOr44 ; Align 806443 164 63 ; Align 806506 187 315 ; Align 807261 293 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr42PSE Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 171 -> 298 Target range: 806451 -> 806823 172 : IleAspAsnSerThrValValLeuTrpAsnPheValPheProSerThrCysLeuPheL : 191 :!::!!!..!:! !..!!.! |||::: ... !!!!! !|||:!!||| ValAsnThrAsnAspThrAlaArgLeuAsnTyrPheLeuAlaThrHisCysValPheG 806452 : GTGAACACGAACGATACAGCGagattgaattatttcttgGCCACGCACTGCGTGTTCG : 806509 192 : ysGlyIleSerTyrSerThrTyrLysIleLeuPheValMetGlnIleValGlnAlaPh : 210 !:!! !!! ..! !:!! !:!!!!.:!!:!!||| :!!!!. !|| lyProLeuProLeuGlnHisHisValCysValLeuLeuLeuGlnGlyMetHisIlePh 806510 : GCCCTTTACCGTTGCAGCATCACGTCTGCGTGTTACTGCTGCAAGGGATGCACATTTT : 806566 211 : eIleIlePheIleAlaGluCysAlaAsnAspSerPhePhePheAlaIleThrMetHis : 229 |.!!! ! !:!:|||.!.|||!.!||||||.!!.!!||||||::!:!:||||||||| ePheAsnAlaValAlaHisCysGlyAsnAspGlyLeuPhePheSerLeuThrMetHis 806567 : CTTCAACGCCGTGGCTCACTGCGGCAACGACGGCCTCTTCTTCAGCCTGACGATGCAT : 806623 230 : LeuCysGlyGlnLeuGluLeuLeuLysAlaArgPheValGluLeuGlyArgLysIleG : 249 ||||||||||||!!!|||:!!|||||| !!.!.!.!.!|||:!!! ! !:!! LeuCysGlyGlnPheGluIleLeuLysMetAsnLeuAlaGluIleGluPheGluAlaI 806624 : CTGTGCGGTCAGTTTGAAATTCTGAAGATGAATCTGGCGGAGATCGAGTTCGAGGCGA : 806683 250 : luLysLysAsnHisCysArgAsnValLeuGlyProTrpIleArgArgHisTyrGlnLe : 268 ||||||!!. !:!!||| ! :!:!:!||||||! !:!!|| leAla---------CysArgLysArgIleGlyValLeuValLysArgHisCysLysLe 806684 : TCGCT---------TGTCGGAAGCGAATCGGCGTTCTCGTGAAACGACACTGCAAACT : 806731 269 : uIleIleLeuAlaArgAsnIleGluAspAlaPheAsnIleAsnIleLeuIleArgLeu : 287 | :!:|||.!!!.!:!!:!!|||.!.::!|||!:!!!:! !||||||:!:!:!||| uAlaValLeuThrAsnAspLeuGluGlnSerPheSerMetIleIleLeuValGlnLeu 806732 : GGCGGTGTTGACCAACGATCTCGAGCAGAGCTTCAGTATGATTATTCTGGTGCAACTC : 806788 288 : SerIleThrThrIleValIleAlaIleSerGly : 298 ! !!!:!:!.!!:!::!!|||..!:!!..!||| MetMetSerAlaLeuLeuIleCysValGluGly 806789 : ATGATGAGTGCGTTGCTAATTTGCGTAGAAGGT : 806823 vulgar: CbirOr42PSE 171 298 . KQ414940.1 806451 806823 + 174 M 79 237 G 3 0 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806452 806823 174 + . gene_id 1 ; sequence CbirOr42PSE ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 806452 806823 . + . KQ414940.1 exonerate:protein2genome:local exon 806452 806823 . + . insertions 0 ; deletions 3 KQ414940.1 exonerate:protein2genome:local similarity 806452 806823 174 + . alignment_id 1 ; Query CbirOr42PSE ; Align 806452 172 237 ; Align 806689 254 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr47 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 207 Query range: 279 -> 391 Target range: 807257 -> 807593 280 : GlyPheGlnPheIleIleAlaMetLysThrSerAspTyrSerMetMetSerLysSerP : 299 |||||| |||:!::!!|||:!!!..|||!.!||| !! ! ! !!:!|||| GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 300 : heLeuValLeuSerAlaPheLeuAlaGlnLeuAlaAlaTyrSerPheValGlyAspTy : 318 ||:!!:!!:!! !.!!!!.||| !|||||| ! !|||:!!!:!!.!|||:!! heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 319 : rLeuLysSerGlnMetGluGluValAlaLeuSerIleTyrTyrCysAlaTrpTyrAsn : 337 |||:!!|||!:!! ||||||:!!|||! !:!! !||| !!! ! !||||||..! rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 338 : LeuProAlaLysValAlaLysAsnLeuValPheIleMetMetTrpThrGlnLeuProI : 357 ! !! !!.! ! !.!|||!:!:!!|||:!!!!.|||!!: ! !.!.! !||| CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 358 : leLysLeuGlnAlaGlyAsnPheIleIleValAspLeuValThrPheMetSerIleIl : 376 !::::!! !||||||!!.|||:!! :!!:!!||| !!||||||! !..!|||:! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 377 : eLysThrSerIleSerTyrLeuSerValLeuArgValMetLeuAsn : 391 :|||.!!||| !|||||||||||||||:!!!:!||||||:!!:!! uLysAlaSerGlySerTyrLeuSerValMetLysValMetMetAsp 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: CbirOr47 279 391 . KQ414940.1 807257 807593 + 207 M 112 336 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807593 207 + . gene_id 1 ; sequence CbirOr47 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807593 207 + . alignment_id 1 ; Query CbirOr47 ; Align 807258 280 336 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr52 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 313 -> 398 Target range: 807332 -> 807587 314 : ValIleMetGlnLeuTyrLeuTyrCysHisSerAlaGluLysLeuLeuThrGluSerV : 333 :!!:!:!!:|||||||||||||||..!:!!:!!!.!.!.! !||| !:!!..!!!!! LeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrG 807333 : TTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCG : 807390 334 : alGlyMetAlaTyrGlyAlaTyrGluCysLysTrpTyrGluLeuSerProAsnAspAl : 352 !! !!!:||| ! !.!||||||!!:! ! ||||||...! ! ! !:!!! || luGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAl 807391 : AAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGC : 807447 353 : aLysAsnLeuMetPheIleValTyrArgSerLysIleProLeuGlnLeuThrAlaGly : 371 |!:!:!!|||:!:!!.|||:!!:!!|||.!!!!. |||! !!:::!!||||||||| aArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGly 807448 : CAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGA : 807504 372 : LysPheGlyThrPheSerMetGluMetPheIleMetThrMetLysThrAlaMetGlyT : 391 ||||||! ! !!.!.!:!:!: ! |||! !! !:!!|||.!!:!! ..!| LysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerT 807505 : AAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGT : 807564 392 : yrLeuSerAlaMetLeuAlaMet : 398 ||||||||!.!||| !!.!||| yrLeuSerValMetLysValMet 807565 : ATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: CbirOr52 313 398 . KQ414940.1 807332 807587 + 142 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807333 807587 142 + . gene_id 1 ; sequence CbirOr52 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807333 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807333 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807333 807587 142 + . alignment_id 1 ; Query CbirOr52 ; Align 807333 314 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr54NTE Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 309 -> 396 Target range: 807332 -> 807593 310 : ValLeuAlaHisLeuPheValTyrCysTyrValGlyGluIleLeuLeuValGlnSerT : 329 :!!||| !!!.|||!:!:!!|||..!|||!.!|||.!.! !||| ! !!:!!!! LeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrG 807333 : TTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCG : 807390 330 : hrGlyMetGlyPheSerAlaTyrGluSerAsnTrpPheAsnIleProGlyLysGluAl : 348 !! !!!:!.! :!!||||||!!:||| !|||!:!..! !! !||| ! ! !|| luGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAl 807391 : AAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGC : 807447 349 : aArgAsnLeuLeuPheIleMetHisArgSerThrIleProLeuCysLeuThrAlaGly : 367 ||||:!!||||||!!.|||!!:||||||.!!!.! |||! ! !!:!!||||||||| aArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGly 807448 : CAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGA : 807504 368 : LysPheGlyThrPheSerLeuGlnMetPheSerThrIleValArgThrSerLeuGlyT : 387 ||||||! ! !!.!.!:!||| ! |||!.! !|||:!!!:!.!!||| !..!| LysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerT 807505 : AAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGT : 807564 388 : yrLeuSerValMetLeuThrValThrAsp : 396 |||||||||||||| !..!:!!! !||| yrLeuSerValMetLysValMetMetAsp 807565 : ATCTGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: CbirOr54NTE 309 396 . KQ414940.1 807332 807593 + 159 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807333 807593 159 + . gene_id 1 ; sequence CbirOr54NTE ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807333 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807333 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807333 807593 159 + . alignment_id 1 ; Query CbirOr54NTE ; Align 807333 310 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr53PN(F) Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 169 Query range: 294 -> 399 Target range: 807281 -> 807593 295 : LysThrGluLeuProValValAlaMetValPhePheValValHisValThrTyrThrM : 314 !..|||:!! ! !|||!.!|||:!! ! !||||||:!! |||||| !: SerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuMetValThr---LeuL 807282 : AGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGATGGTGACT---TTGC : 807336 315 : etLeuHisIlePheValTyrCysTyrValGlyGluGlnLeuLeuIleGluSerThrGl : 333 !!:!!!!.:!:!:!:!!|||..!|||!.!|||.!. !||| ! ..!!!! !! euIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGl 807337 : TGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGA : 807393 334 : yLeuAlaGlnSerAlaTyrAspCysGluTrpTyrGluLeuProSerLysLysAlaIle : 352 !:!!||||||:!!|||||||||! ! ||||||...! !! !.!! ! !|||! ! uIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArg 807394 : AATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGA : 807450 353 : CysLeuIleIleIleIleIleArgAlaAsnValSerPheLysIleThrAlaGlyLysP : 372 !|||:!!:!:|||||| !|||!.!||| ! !!!:!:::|||||||||||||||| AspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysP 807451 : GATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAAT : 807510 373 : heSerSerPheSerLeuGluLeuPheGlyThrIleLeuLysThrSerAlaGlyTyrLe : 391 || ! !!.!.!:!||| !||| ! !|||||||||.!!|||!.!..!||||| heValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLe 807511 : TCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCT : 807567 392 : uSerValLeuLeuAlaMetSerAsp : 399 |||||||:!! !!.!|||! !||| uSerValMetLysValMetMetAsp 807568 : GTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: CbirOr53PN(F) 294 399 . KQ414940.1 807281 807593 + 169 M 17 51 G 1 0 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807282 807593 169 + . gene_id 1 ; sequence CbirOr53PN(F) ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807282 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807282 807593 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807282 807593 169 + . alignment_id 1 ; Query CbirOr53PN(F) ; Align 807282 295 51 ; Align 807333 313 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr49 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 335 Query range: 192 -> 399 Target range: 806538 -> 807587 193 : IleCysIleValGlnAlaValGlnLeuIleSerLeuAlaThrGlyAsnCysGlySerA : 212 :!:! :!::!!|||!.!:!!!!.:!!.!!! ! !|||..!!.!:!!||||||!:!| ValLeuLeuLeuGlnGlyMetHisIlePhePheAsnAlaValAlaHisCysGlyAsnA 806539 : GTGTTACTGCTGCAAGGGATGCACATTTTCTTCAACGCCGTGGCTCACTGCGGCAACG : 806596 213 : spValPheLeuPheGlyIleCysMetHisLeuCysGlyGlnLeuGluIleLeuGlyLe : 231 ||! !.!!!!!|||.!!:!: ||||||||||||||||||!!!||||||||| !:! spGlyLeuPhePheSerLeuThrMetHisLeuCysGlyGlnPheGluIleLeuLysMe 806597 : ACGGCCTCTTCTTCAGCCTGACGATGCATCTGTGCGGTCAGTTTGAAATTCTGAAGAT : 806653 232 : uGlnLeuSerArgPheHisGluGlyLysGlyAsnAspSerTrpGlyLysThrLysLeu : 250 !.!.|||:!! ||| !:!! !.!.! ! ! !!::!! !::!:!! tAsnLeuAla---------GluIleGluPheGluAlaIleAlaCysArgLysArgIle 806654 : GAATCTGGCG---------GAGATCGAGTTCGAGGCGATCGCTTGTCGGAAGCGAATC : 806701 251 : ValAlaLeuIleGluArgHisCysLeuLeuLeuAsnLeuAlaLysAspIleValAspT : 270 ! !!.!|||:!::!!||||||||| !||| ! |||.!!!!.|||:!!! !.!.! GlyValLeuValLysArgHisCysLysLeuAlaValLeuThrAsnAspLeuGluGlnS 806702 : GGCGTTCTCGTGAAACGACACTGCAAACTGGCGGTGTTGACCAACGATCTCGAGCAGA : 806761 271 : hrLeuAspIleIleLeuSerAlaGlnLeuIlePheGlnAlaSerLeuIleCysIleIl : 289 :!!!!..!!!:|||:!! !!.!||||||!!:.!....|||! !|||||||||:!! erPheSerMetIleIleLeuValGlnLeuMetMetSerAlaLeuLeuIleCysValGl 806762 : GCTTCAGTATGATTATTCTGGTGCAACTCATGATGAGTGCGTTGCTAATTTGCGTAGA : 806818 290 : e{G} >>>> Target Intron 1 >>>> {ly}LeuGlnPheIleValSerLeu : 297 !{|} 437 bp {||}!!! |||:!:|||:!!||| u{G}++ ++{ly}PheValPheLeuValAlaLeu 806819 : A{G}gt.........................ag{GT}TTCGTCTTCCTGGTCGCTCTG : 807279 298 : AlaIleSerAspPhePheLeuValValArgSerIleLeuSerPheGlyIleLeuMetI : 317 ::!! !.!||| ! !! !!.!:!!||||||.!!:!! !.!.! !! !|||:!!| SerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuMetValThrLeuLeuI 807280 : AGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGA : 807339 318 : leGlnLeuPheLeuTyrThrTyrValGlyGluIleLeuSerLeuArgThrGlnAlaIl : 336 ||||||||!:!||||||.!!|||!.!|||.!.! !|||..!! !||||||:!!! !|| leGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluIl 807340 : TTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAAT : 807396 337 : eSerThrAlaIleTyrLeuSerLysTrpTyrAspLeuProIleAsnIleThrArgAsp : 355 |:!! !||| !||| !||| |||||| !! !! ! :!! !.!!|||||| eAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAsp 807397 : TGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGAT : 807453 356 : IleCysPheIleMetPheArgAlaThrTyrProValTyrIleArgValGlyLysPheT : 375 :!! !!!.|||!!: !|||!.!!.!! ||| ! !|||! !!.!||||||||| LeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheV 807454 : CTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCG : 807513 376 : yrAsnMetAspLeuAsnThrPheLysThrIleLeuLysAlaSerAlaSerTyrPheSe : 394 ! |||:!!||| !||||||||| !|||||||||||||||!.!||||||.!.|| alProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSe 807514 : TCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTC : 807570 395 : rValLeuArgIleMet : 399 ||||:!!!:!:!!||| rValMetLysValMet 807571 : TGTAATGAAGGTAATG : 807587 vulgar: CbirOr49 192 399 . KQ414940.1 806538 807587 + 335 M 42 126 G 3 0 M 52 156 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 109 327 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806539 807587 335 + . gene_id 1 ; sequence CbirOr49 ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 806539 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806539 806821 . + . insertions 0 ; deletions 3 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807258 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 806539 807587 335 + . alignment_id 1 ; Query CbirOr49 ; Align 806539 193 126 ; Align 806665 238 156 ; Align 807261 291 327 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr48INT Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 320 Query range: 157 -> 366 Target range: 806529 -> 807593 158 : TyrLeuLeuIlePheValValGlnTyrIleLeuLeuValLeuThrSerThrGlyAsnL : 177 :!!:!!! !:!:!!.:!!:!!||| !!:! !:!! !!!!!!.!:!!..!!.!:!!! HisValCysValLeuLeuLeuGlnGlyMetHisIlePhePheAsnAlaValAlaHisC 806530 : CACGTCTGCGTGTTACTGCTGCAAGGGATGCACATTTTCTTCAACGCCGTGGCTCACT : 806587 178 : euGlySerAspSerLeuPheLeuAlaIleThrMetHisValCysGlyGlnValLysLe : 196 !|||!:!|||.!!||||||!!!::!:!:|||||||||:!!||||||||| !!:!!:! ysGlyAsnAspGlyLeuPhePheSerLeuThrMetHisLeuCysGlyGlnPheGluIl 806588 : GCGGCAACGACGGCCTCTTCTTCAGCCTGACGATGCATCTGTGCGGTCAGTTTGAAAT : 806644 197 : uLeuLysAspGluPheMetAsnPheGlyMetGluAsnLysAsnIleAsnGluGluPhe : 215 !|||||| .!..!. !.!..!!! !.!.||| ! ! !...:!!..!.!! eLeuLysMetAsnLeuAlaGluIleGluPheGluAlaIleAlaCysArgLysArgIle 806645 : TCTGAAGATGAATCTGGCGGAGATCGAGTTCGAGGCGATCGCTTGTCGGAAGCGAATC : 806701 216 : ValLysLeuThrMetArgHisArgHisLeuLeuAspTyrAlaGluLeuLeuAlaAspT : 235 ! ! |||..!! |||||| !! ! ||| !! ! .!!.!. !|||! !.!.! GlyValLeuValLysArgHisCysLysLeuAlaValLeuThrAsnAspLeuGluGlnS 806702 : GGCGTTCTCGTGAAACGACACTGCAAACTGGCGGTGTTGACCAACGATCTCGAGCAGA : 806761 236 : hrIleSerPheValLeuLeuAlaGlnLeuLeuIleSerCysIleLeuIleCysIleTh : 254 :!.!!|||.!.:!!:!!|||!.!||||||:!!!!:|||...:!:|||||||||:!! erPheSerMetIleIleLeuValGlnLeuMetMetSerAlaLeuLeuIleCysValGl 806762 : GCTTCAGTATGATTATTCTGGTGCAACTCATGATGAGTGCGTTGCTAATTTGCGTAGA : 806818 255 : r{G} >>>> Target Intron 1 >>>> {ly}PheGlnPheIleLeuAlaLeu : 262 !{|} 437 bp {||}||| |||:!::!!|||||| u{G}++ ++{ly}PheValPheLeuValAlaLeu 806819 : A{G}gt.........................ag{GT}TTCGTCTTCCTGGTCGCTCTG : 807279 263 : LysValGlyAspLeuValMetIleThrLysThrValMetValLeuGlyCysPheLeuS : 282 !....! !||| !||| ! !!:!!:! !!:!::!!:!!! ! !!!.|||! SerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuMetValThrLeuLeuI 807280 : AGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGA : 807339 283 : erGlnLeuPheAlaTyrSerPheValGlyAspTyrLeuLysTyrGlnMetGluGluVa : 301 !||||||!:! !|||:!!!:!!.!|||:!! |||:!!! !:!! ||||||:! leGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluIl 807340 : TTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAAT : 807396 302 : lAlaHisSerIleTyrCysCysAsnTrpGlnCysLeuSerValLysPheMetLysAsn : 320 !|||!!.:!! !||| !! ! !||| ! !!! ! !! ! ! !:!:!! eAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAsp 807397 : TGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGAT : 807453 321 : ValLeuPheValIleMetArgSerGlnGlnProValGlnLeuAlaAlaGlyLysPheI : 340 :!!|||!!.:!!||| |||.!!.!...!||| !!:::!!.!!||||||||||||: LeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheV 807454 : CTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCG : 807513 341 : leValValAsnIleGluThrTyrMetThrIleLeuLysThrSerLeuSerTyrLeuSe : 359 !! !:!!|||:!! |||!:!! ! !|||||||||.!!||| !||||||||||| alProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSe 807514 : TCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTC : 807570 360 : rValLeuArgValMetLeuAsp : 366 ||||:!!!:!||||||:!!||| rValMetLysValMetMetAsp 807571 : TGTAATGAAGGTAATGATGGAC : 807593 vulgar: CbirOr48INT 157 366 . KQ414940.1 806529 807593 + 320 M 97 291 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806530 807593 320 + . gene_id 1 ; sequence CbirOr48INT ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 806530 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806530 806821 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807258 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 806530 807593 320 + . alignment_id 1 ; Query CbirOr48INT ; Align 806530 158 291 ; Align 807261 256 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr41 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 163 -> 292 Target range: 806445 -> 806823 164 : SerAsnGlySerAspSerAsnThrSerAsnTrpIlePheLeuIleProSerGlyMetL : 183 |||!..! !!:! !:!:!!|||:!!... :::...::: !!!!! ! : SerThrValAsnThrAsnAspThrAlaArgLeuAsnTyrPheLeuAlaThrHisCysV 806446 : TCAACGGTGAACACGAACGATACAGCGagattgaattatttcttgGCCACGCACTGCG : 806503 184 : euSerSerLysLeuThrThrLeuGlnTyrThrIleLeuTyrIleLeuGlnAsnLeuGl : 202 !!! !.!! ||| !! !! !!!.:!!..! !:!!! :!:||||||...:!!!! alPheGlyProLeuProLeuGlnHisHisValCysValLeuLeuLeuGlnGlyMetHi 806504 : TGTTCGGCCCTTTACCGTTGCAGCATCACGTCTGCGTGTTACTGCTGCAAGGGATGCA : 806560 203 : nIleIleValValCysValThrGlnCysIleThrAspSerLeuTyrIleSerIleVal : 221 .|||.!! !! !..!|||.!!!!.||| !!.!|||.!!|||!:!.!!|||:!:..! sIlePhePheAsnAlaValAlaHisCysGlyAsnAspGlyLeuPhePheSerLeuThr 806561 : CATTTTCTTCAACGCCGTGGCTCACTGCGGCAACGACGGCCTCTTCTTCAGCCTGACG : 806617 222 : LeuHisLeuThrGlyGlnLeuLysIleLeuLysMetLysPheLysAlaPheAlaSerL : 241 :!!|||||| !||||||!!!:!!||||||||||||!!. .!.|||..!! MetHisLeuCysGlyGlnPheGluIleLeuLysMetAsn---------LeuAlaGluI 806618 : ATGCATCTGTGCGGTCAGTTTGAAATTCTGAAGATGAAT---------CTGGCGGAGA : 806668 242 : ysProAspThrGluIleAsnTyrArgLysGlnLeuIleSerLeuIleAsnArgHisCy : 260 ! ! !! !||| !! !||||||!:!:!! ! !|||:!:!!.|||||||| leGluPheGluAlaIleAlaCysArgLysArgIleGlyValLeuValLysArgHisCy 806669 : TCGAGTTCGAGGCGATCGCTTGTCGGAAGCGAATCGGCGTTCTCGTGAAACGACACTG : 806725 261 : sLysLeuThrGluLeuAsnGlnAsnIleGluAspThrPheHisLeuValIleLeuLeu : 279 |||||||.!!! !|||!.!.!.:!!:!!|||.!.!:!||| !:!!:!!||||||:!! sLysLeuAlaValLeuThrAsnAspLeuGluGlnSerPheSerMetIleIleLeuVal 806726 : CAAACTGGCGGTGTTGACCAACGATCTCGAGCAGAGCTTCAGTATGATTATTCTGGTG : 806782 280 : GlnLeuThrIleAlaThrLeuLeuLeuAlaLeuIleGly : 292 ||||||! !!!:::!.!!||||||:!!..!:!! !||| GlnLeuMetMetSerAlaLeuLeuIleCysValGluGly 806783 : CAACTCATGATGAGTGCGTTGCTAATTTGCGTAGAAGGT : 806823 vulgar: CbirOr41 163 292 . KQ414940.1 806445 806823 + 149 M 71 213 G 3 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806446 806823 149 + . gene_id 1 ; sequence CbirOr41 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 806446 806823 . + . KQ414940.1 exonerate:protein2genome:local exon 806446 806823 . + . insertions 0 ; deletions 3 KQ414940.1 exonerate:protein2genome:local similarity 806446 806823 149 + . alignment_id 1 ; Query CbirOr41 ; Align 806446 164 213 ; Align 806659 238 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr43PSE Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 307 Query range: 47 -> 390 Target range: 806021 -> 807593 48 : ThrMetIleAsnValLeuIleGluProPheLysSerCysGlyValProArgAspGlyL : 67 |||!!: !!:!:!!! !:!!||| !!:!::: !||| !! !! ! !||| !: ThrIleTyrSerLeuSerLeuGluValTyrArgHisCysLeuAspLeuAspAspThrM 806022 : ACTATCTACAGCCTGTCTCTCGAAGTCTATCGTCATTGTCTGGACCTCGACGACACGA : 806079 68 : euGluSerLeuArgMetIleGluSerCysLeuHisSerTrpUnkAsnIleIlePhePr : 86 !!!!::!!!!! !||| ! !|||! :!! !||| !...!!.:!::!! !! etAspAlaPheValMetAspLeuSerSerValIleSerLeuSerLysLeuLeuValLe 806080 : TGGACGCGTTCGTCATGGATCTGTCGTCGGTGATCAGTCTGTCCAAGCTGCTCGTTTT : 806136 87 : oArgIleTyrValLysLysIleThrIleAsnMetAsnAlaAlaIleAspAspTrpSer : 105 !|||!!: ! !||| ! ! ! ! ! !:!::!!:!! !:!! ! ||||||!!! uArgMetLysSerLysHisThrTyrAlaLeuValAspSerIleValLysAspTrpThr 806137 : ACGGATGAAATCGAAACACACTTACGCTCTCGTCGATTCGATCGTCAAAGACTGGACG : 806193 106 : SerValSerLeuLysLysGluSerArgLeuThrMetMetAlaTyrAlaArgIleGluA : 125 !:!|||..!! !...:::.!...!|||:!! |||! !! !||| !!.!! !! !| AsnValAspHisSerArgHisGluArgIle---MetThrGluTyrPheAsnLysGlyA 806194 : AACGTCGATCATTCCCGCCACGAACGCATC---ATGACGGAGTACTTCAACAAAGGAA : 806250 126 : rgLeuValSerLeuThrAsnLeuThrLeuGlyGlyValGlyPheValLeuPhePhe : 144 ||:!!||||||||||||! ||| !|||||| !!.!..! :!!! !||| !! rgIleValSerLeuThrIleLeuTyrLeuGlyTyrAlaSerGlyLeuSerPheVal-+ 806251 : GAATCGTTTCGTTGACGATACTCTACCTTGGATACGCCTCTGGACTGTCTTTCGTTct : 806307 145 : >>>> Target Intron 1 >>>> AlaSerValPheLeuSerAsnLysProLysV : 154 118 bp ! ! ! !! !:!!|||..! !! ! ++LysLeuHisSerTrpAlaAsnSerThrValA 806308 : .........................agAAGCTCCACAGTTGGGCGAATTCAACGGTGA : 806455 155 : alAlaThrAsnAspThrThrTrpAsnPheValLeuProSerThrCysLeuTyrLysGl : 173 !.!!!.!:!! .!! |||::: ||| !!!!! !|||:!!!:! snThrAsnAspThrAlaArgLeuAsnTyrPheLeuAlaThrHisCysValPheGlyPr 806456 : ACACGAACGATACAGCGagattgaattatttcttgGCCACGCACTGCGTGTTCGGCCC : 806512 174 : yValSerTyrSerMetPheLysAlaLeuPheAlaIleGlnValIleGlnGlyAlaIle : 192 !:!! !!! ..! ! ..!:!!!!. !:!:|||! !!!:!!. ! !.!! oLeuProLeuGlnHisHisValCysValLeuLeuLeuGlnGlyMetHisIlePhePhe 806513 : TTTACCGTTGCAGCATCACGTCTGCGTGTTACTGCTGCAAGGGATGCACATTTTCTTC : 806569 193 : IleIleIleSerGluCysAlaTyrAspSerPhePhePheAsnIleIleMetHisLeuC : 212 ! ! !:!::!!.!.|||!.! !!|||.!!.!!||||||!:!:!:! |||||||||| AsnAlaValAlaHisCysGlyAsnAspGlyLeuPhePheSerLeuThrMetHisLeuC 806570 : AACGCCGTGGCTCACTGCGGCAACGACGGCCTCTTCTTCAGCCTGACGATGCATCTGT : 806629 213 : ysGlyGlnLeuGluLeuLeuArgIleGlnPheLeuAlaPheAsnGlnLysHisAsnAs : 231 ||||||||!!!|||:!!|||!:!!!:.!..!. ! :!!! .!. !!! ysGlyGlnPheGluIleLeuLysMetAsnLeuAla---------GluIleGluPheGl 806630 : GCGGTCAGTTTGAAATTCTGAAGATGAATCTGGCG---------GAGATCGAGTTCGA : 806677 232 : pLysThrHisAsnGlyAsnIleLeuArgLeuLeuValLysArgHisCysHisLeuIle : 250 : !! ! ! ! !!!!. !:!! !!:!!|||||||||||||||||| ! ||| uAlaIleAlaCysArgLysArgIleGlyValLeuValLysArgHisCysLysLeuAla 806678 : GGCGATCGCTTGTCGGAAGCGAATCGGCGTTCTCGTGAAACGACACTGCAAACTGGCG : 806734 251 : AlaLeuThrLysAsnIleGluAspAlaPheAsnIleAsnIleLeuLeuArgLeuLeuI : 270 !.!||||||!!.:!!:!!|||.!.::!|||!:!!!:! !||||||:!!!:!|||:!!! ValLeuThrAsnAspLeuGluGlnSerPheSerMetIleIleLeuValGlnLeuMetM 806735 : GTGTTGACCAACGATCTCGAGCAGAGCTTCAGTATGATTATTCTGGTGCAACTCATGA : 806794 271 : leIleSerValValIleAlaAlaSer{G} >>>> Target Intron 2 >>>> : 279 !:! !:!!:!!:!!|||..!!.!..!{|} 437 bp etSerAlaLeuLeuIleCysValGlu{G}++ ++ 806795 : TGAGTGCGTTGCTAATTTGCGTAGAA{G}gt.........................ag : 807257 280 : {ly}IleGlyValIleLeuSerLeuLysAsnHisAspTyrLysGluValMetLysMet : 297 {||}.!!! ! !!:!::!!:!!|||!..!.. ! ||| !! ! !!.!:!!!:!! {ly}PheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSer 807258 : {GT}TTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGC : 807312 298 : LeuIleSerIleGlnPheTyrMetIleGlnThrLeuLeuCysThrTyrAlaGlyAspS : 317 !!!:!! !!!: ! !! :!!|||||| !! !|||! !.!!|||||||||:!!! PheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnT 807313 : TTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACA : 807372 318 : erLeuGlnAsnGlnSerGluAlaIleIleHisAlaIleTyrAsnSerThrTrpHisGl : 336 !!|||:!!:::!:!!!!|||! !||| !!!.||| !|||:!!||| !|||:!!.. hrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrAr 807373 : CACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCG : 807429 337 : uMetProProValMetValLysAspLeuIleLeuValMetIleArgLeuLysThrPro : 355 . ! ! ! ! !.!!:!||||||:!!|||:!!!!: !||| !!!.:!!||| gCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerPro 807430 : TTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCT : 807486 356 : LeuArgIleSerAlaGlyLysPhePheTyrLeuThrArgSerThrMetThrAspIleL : 375 ! !||||||!!!|||||||||||| !! :!!!.!! !! !|||.!.! !!!:|||| TyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleL 807487 : TATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATAC : 807546 376 : euLysThrThrValThrTyrIleSerPheLeuGlnValThrValAsp : 390 |||||.!!:!!! !:!!|||:!:||| ! :!!:!!|||! !:!!||| euLysAlaSerGlySerTyrLeuSerValMetLysValMetMetAsp 807547 : TGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: CbirOr43PSE 47 390 . KQ414940.1 806021 807593 + 307 M 68 204 G 1 0 M 27 81 5 0 2 I 0 114 3 0 2 M 80 240 G 3 0 M 52 156 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806022 807593 307 + . gene_id 1 ; sequence CbirOr43PSE ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 806022 806306 . + . KQ414940.1 exonerate:protein2genome:local exon 806022 806306 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local splice5 806307 806308 . + . intron_id 1 ; splice_site "CT" KQ414940.1 exonerate:protein2genome:local intron 806307 806424 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 806423 806424 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 806425 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806425 806821 . + . insertions 0 ; deletions 3 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 2 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807258 . + . intron_id 2 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 1 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 806022 807593 307 + . alignment_id 1 ; Query CbirOr43PSE ; Align 806022 48 204 ; Align 806226 117 81 ; Align 806425 144 240 ; Align 806665 227 156 ; Align 807261 280 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr53PN(F) Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 333 -> 387 Target range: 4369 -> 4207 334 : LeuAlaGlnSerAlaTyrAspCysGluTrpTyrGluLeuProSerLysLysAlaIleCysLe : 354 :!!!.!:!! !!.!||| !!:|||||| ! ||||||..!!:!!:! !:!! !|| ValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLe 4369 : GTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTT : 4309 355 : uIleIleIleIleIleArgAlaAsnValSerPheLysIleThrAlaGlyLysPheSerSerP : 375 ||||:!:||||||! !|||:!!|||||| ! !!:!!|||||||||||||||... . uIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLysIlePheHisM 4308 : AATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaaaatattccata : 4246 376 : heSerLeuGluLeuPheGlyThrIleLeuLysThrSer : 387 ..|||||| ! !|||||| !:!! !:!!|||!:! etSerLeuTyrThrPheGlyAspValSerGluThrAsn 4245 : tgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 4208 vulgar: CbirOr53PN(F) 333 387 . LHQN01027980.1 4369 4207 - 111 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4208 4369 111 - . gene_id 1 ; sequence CbirOr53PN(F) ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4208 4369 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4208 4369 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4208 4369 111 - . alignment_id 1 ; Query CbirOr53PN(F) ; Align 4370 334 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr63NTE Target: KQ414601.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold45, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 324 -> 385 Target range: 1068357 -> 1066764 325 : ValTyrAspAlaAlaTyrGluTyrAsnTrpTyrThrLeuGluProLysLysAlaAr : 343 ||| !!!:||| !|||!!: !.!.||| ! !|||..! !:::!!. !!: ValThrGluAlaTyrTyrAspThrGluTrpGlnGluLeuSerValArgAsnGlnLy 1068357 : GTGACCGAAGCGTACTATGATACCGAGTGGCAAGAATTATCGGTCCGTAATCAAAA : 1068303 344 : gAsnIleLeuMetIleMetIleArgAlaAsnLysProLeuTyrLeuThrAlaGlyL : 362 ! :!:|||:!: !||| ! !!.!...!:! !!||||||||||||||||||| sLeuLeuLeuLeuAlaMetArgSerGlyArgArgThrLeuTyrLeuThrAlaGlyL 1068302 : GCTGTTGCTTCTTGCCATGCGTTCTGGACGAAGAACGTTATACCTTACAGCTGGAA : 1068246 363 : ysLeuPheProLeuThrMetAlaMetPheCysAsn >>>> Target Intron : 374 ||:!!!:! !!!!:!!:!! ! ||| !:!! 1410 bp ysValTyrAsnPheSerLeuTyrGlyPheIleHis++ 1068245 : AAGTGTACAATTTCTCCTTGTACGGTTTTATCCATgt................... : 1068208 375 : 1 >>>> LeuLeuLysThrSerGlyGlyTyrIleSerValLeu : 385 :!!:!!||||||||| !||||||:!!|||:!!||| ++IleMetLysThrSerPheGlyTyrValSerLeuLeu 1068207 : ......agaTTATGAAAACCTCCTTCGGATACGTTTCTCTATTA : 1066765 vulgar: CbirOr63NTE 324 385 . KQ414601.1 1068357 1066764 - 105 M 49 147 5 0 2 I 0 1406 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414601.1 exonerate:protein2genome:local gene 1066765 1068357 105 - . gene_id 1 ; sequence CbirOr63NTE ; gene_orientation + KQ414601.1 exonerate:protein2genome:local cds 1068211 1068357 . - . KQ414601.1 exonerate:protein2genome:local exon 1068211 1068357 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local splice5 1068209 1068210 . - . intron_id 1 ; splice_site "GT" KQ414601.1 exonerate:protein2genome:local intron 1066801 1068210 . - . intron_id 1 KQ414601.1 exonerate:protein2genome:local splice3 1066801 1066802 . - . intron_id 0 ; splice_site "ag" KQ414601.1 exonerate:protein2genome:local cds 1066765 1066800 . - . KQ414601.1 exonerate:protein2genome:local exon 1066765 1066800 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local similarity 1066765 1068357 105 - . alignment_id 1 ; Query CbirOr63NTE ; Align 1068358 325 147 ; Align 1066801 374 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr58NTE Target: KQ414601.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold45, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 321 -> 382 Target range: 1068357 -> 1066764 322 : ValTyrTyrAlaThrTyrGluTyrAlaTrpTyrSerLeuLysProAsnGlnAlaLy : 340 ||| ! ! ||| !|||!!: !! !||| ! ..!|||..! !..!.!. !|| ValThrGluAlaTyrTyrAspThrGluTrpGlnGluLeuSerValArgAsnGlnLy 1068357 : GTGACCGAAGCGTACTATGATACCGAGTGGCAAGAATTATCGGTCCGTAATCAAAA : 1068303 341 : sAspLeuMetLeuIleMetIleArgAlaGluLysProLeuTyrIleThrAlaGlyA : 359 | |||:!:||| !||| ! !!.!..!!:! !!||||||:!!|||||||||! sLeuLeuLeuLeuAlaMetArgSerGlyArgArgThrLeuTyrLeuThrAlaGlyL 1068302 : GCTGTTGCTTCTTGCCATGCGTTCTGGACGAAGAACGTTATACCTTACAGCTGGAA : 1068246 360 : rgIlePheProMetThrLeuSerMetPheCysSer >>>> Target Intron : 371 :!:!:!:! !.!.:!!|||! ! ||| ! ! 1410 bp ysValTyrAsnPheSerLeuTyrGlyPheIleHis++ 1068245 : AAGTGTACAATTTCTCCTTGTACGGTTTTATCCATgt................... : 1068208 372 : 1 >>>> LeuIleLysThrSerAlaGlyTyrIleSerValLeu : 382 :!!!!:||||||||| !||||||:!!|||:!!||| ++IleMetLysThrSerPheGlyTyrValSerLeuLeu 1068207 : ......agaTTATGAAAACCTCCTTCGGATACGTTTCTCTATTA : 1066765 vulgar: CbirOr58NTE 321 382 . KQ414601.1 1068357 1066764 - 100 M 49 147 5 0 2 I 0 1406 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414601.1 exonerate:protein2genome:local gene 1066765 1068357 100 - . gene_id 1 ; sequence CbirOr58NTE ; gene_orientation + KQ414601.1 exonerate:protein2genome:local cds 1068211 1068357 . - . KQ414601.1 exonerate:protein2genome:local exon 1068211 1068357 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local splice5 1068209 1068210 . - . intron_id 1 ; splice_site "GT" KQ414601.1 exonerate:protein2genome:local intron 1066801 1068210 . - . intron_id 1 KQ414601.1 exonerate:protein2genome:local splice3 1066801 1066802 . - . intron_id 0 ; splice_site "ag" KQ414601.1 exonerate:protein2genome:local cds 1066765 1066800 . - . KQ414601.1 exonerate:protein2genome:local exon 1066765 1066800 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local similarity 1066765 1068357 100 - . alignment_id 1 ; Query CbirOr58NTE ; Align 1068358 322 147 ; Align 1066801 371 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr57NTE Target: KQ414601.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold45, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 326 -> 384 Target range: 1068348 -> 1066764 327 : AlaValTyrAspTyrAlaTrpTyrLeuLeuLysProLysGluAlaArgSerLeuMe : 345 ||| !|||||| !! !||| ! !|||..! !:::.!. !!:! !|||:! AlaTyrTyrAspThrGluTrpGlnGluLeuSerValArgAsnGlnLysLeuLeuLe 1068348 : GCGTACTATGATACCGAGTGGCAAGAATTATCGGTCCGTAATCAAAAGCTGTTGCT : 1068294 346 : tLeuIleMetIleArgAlaAspLysProLeuTyrIleThrAlaGlyArgIlePheP : 364 :||| !||| ! !!.! !:! !!||||||:!!|||||||||!:!:!:!:! uLeuAlaMetArgSerGlyArgArgThrLeuTyrLeuThrAlaGlyLysValTyrA 1068293 : TCTTGCCATGCGTTCTGGACGAAGAACGTTATACCTTACAGCTGGAAAAGTGTACA : 1068237 365 : roMetThrLeuSerMetPheCysSer >>>> Target Intron 1 >>>> I : 373 !.!.:!!|||! ! ||| ! ! 1410 bp | snPheSerLeuTyrGlyPheIleHis++ ++I 1068236 : ATTTCTCCTTGTACGGTTTTATCCATgt.........................aga : 1066800 374 : leIleLysThrSerAlaGlyTyrIleSerValLeu : 384 ||!!:||||||||| !||||||:!!|||:!!||| leMetLysThrSerPheGlyTyrValSerLeuLeu 1066799 : TTATGAAAACCTCCTTCGGATACGTTTCTCTATTA : 1066765 vulgar: CbirOr57NTE 326 384 . KQ414601.1 1068348 1066764 - 103 M 46 138 5 0 2 I 0 1406 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414601.1 exonerate:protein2genome:local gene 1066765 1068348 103 - . gene_id 1 ; sequence CbirOr57NTE ; gene_orientation + KQ414601.1 exonerate:protein2genome:local cds 1068211 1068348 . - . KQ414601.1 exonerate:protein2genome:local exon 1068211 1068348 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local splice5 1068209 1068210 . - . intron_id 1 ; splice_site "GT" KQ414601.1 exonerate:protein2genome:local intron 1066801 1068210 . - . intron_id 1 KQ414601.1 exonerate:protein2genome:local splice3 1066801 1066802 . - . intron_id 0 ; splice_site "ag" KQ414601.1 exonerate:protein2genome:local cds 1066765 1066800 . - . KQ414601.1 exonerate:protein2genome:local exon 1066765 1066800 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local similarity 1066765 1068348 103 - . alignment_id 1 ; Query CbirOr57NTE ; Align 1068349 327 138 ; Align 1066801 373 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr71PN Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 287 Query range: 90 -> 246 Target range: 203816 -> 204284 91 : IleIleProLeuIleSerMetIleThrGluAspTrpLeuLysSerArgAsnValArgG : 110 :!!:!:||||||:!!!:!||||||.!!||||||||| !|||! !!:!!..! ! !| LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspPheG 203817 : CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATTTCG : 203874 111 : luArgAsnValMetIleThrTrpThrGlnArgLeuArgMetIleValLeuAlaSerTy : 129 |||||:!!||||||||| ! ! |||!:!! ! !||| ! ! !:!! !||||| luArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSerTy 203875 : AAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAGTTA : 203931 130 : rIleLeuThrGlyValAlaPheValSerValIleLeuLeuProMetPheGlyValSer : 148 | |||! ! !..!||| ! :!!! !:!!|||:!!||||||! !|||:!!!!! rAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIleThr 203932 : TGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATTACC : 203988 149 : LeuThrTyrGlyValAsnIleAsnAsnThrGluLysArgPheProLeuArgValTyrT : 168 !! !|||! !..!||| !!.!|||! !:!!|||! !||||||:!!! ...|||| ThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrTyrT 203989 : ACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttatt : 204048 169 : yrPhePheAspValThrSerArgProGlnTyrGluLeuThrTyrIleSerLeuSerIl : 187 ||...:::|||::::!!..!! !||| ! !:!|||:!!! !!:!:!! !! !! ! yrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAl 204049 : atatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGC : 204105 188 : eGlyLeuPhePheAlaAlaValThrTyrThrGlyIleAspAsnPheLeuGlyLeuLeu : 206 ! !||| ! !!. !|||:!! !|||! !|||:!!|||||||||!!!|||:!!||| aThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeu 204106 : CACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTG : 204162 207 : ValPheHisThrCysSerGlnLeuAspIleLeuSerThrArgPheMetTyrLeuAsnL : 226 :!!.!!|||! !|||.!!||||||!!:! !||| !!||||||.!! !!:!!!!. IleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysH 204163 : ATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAAC : 204222 227 : ysPheValLysPheHisAsnGlyLeuLysAsnCysValMetAsnHisThrArgLeuLe : 245 ! !!.! !! ||| !!..! !||| !!.! ||| :!!|||..!||||||:! isLeuGluThrPheAspArgIleLeuValThrThrValGluAspHisValArgLeuIl 204223 : ATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCGACTTAT : 204279 246 : uArg : 246 !||| eArg 204280 : TAGG : 204284 vulgar: CbirOr71PN 90 246 . KQ414617.1 203816 204284 + 287 M 156 468 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203817 204284 287 + . gene_id 1 ; sequence CbirOr71PN ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203817 204284 . + . KQ414617.1 exonerate:protein2genome:local exon 203817 204284 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203817 204284 287 + . alignment_id 1 ; Query CbirOr71PN ; Align 203817 91 468 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr71PN Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 300 -> 357 Target range: 204763 -> 204934 301 : LeuValIleGlnCysAspArgMetTyrTyrAlaIleCysSerGlnGluTrpTyrThrL : 320 ||| !|||:!!! !!!:..!:!:||| !||| ! !..! ||||||! !.!| LeuSerIleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnL 204764 : ttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATT : 204821 321 : euGluSerLysLysAlaArgAsnLeuIlePheLeuLeuIleGlnThrLysIleProCy : 339 ||:!!|||!!.||||||!:!!:!||||||!!.:!!:!! !::!.!!:!!! ||| euLysSerAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLe 204822 : TGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCT : 204878 340 : sTyrIleThrAlaGlyLysIlePheProMetThrMetAlaThrPheCysSerLeu : 357 !! !:!!||||||||||||:::||||||||||||||| !|||||||||!:!:!! uCysLeuThrAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsnVal 204879 : CTGTTTAACCGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: CbirOr71PN 300 357 . KQ414617.1 204763 204934 + 136 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204764 204934 136 + . gene_id 2 ; sequence CbirOr71PN ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204764 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204764 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204764 204934 136 + . alignment_id 2 ; Query CbirOr71PN ; Align 204764 301 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr69NI Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 279 Query range: 91 -> 247 Target range: 203816 -> 204284 92 : ValIleProIleIleSerMetIleThrGluAspTrpLeuLysSerArgAspValGlnG : 111 :!!:!:|||:!!:!!!:!||||||.!!||||||||| !|||! !!:! ! ! | LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspPheG 203817 : CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATTTCG : 203874 112 : luLysLysValMetIleThrTrpAlaGlnLysSerArgIleIleValIleSerSerTy : 130 ||!:! ! ||||||||| ! ! .!!!:!! !!!||| !! ! !||| !||||| luArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSerTy 203875 : AAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAGTTA : 203931 131 : rIleValMetGlyValThrSerValCysGlyValLeuLeuProIlePheGlyIleSer : 149 | :!!!!: !..!.!! !:!!! ! !:!!:!!||||||! ! !||||||!!! rAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIleThr 203932 : TGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATTACC : 203988 150 : ProThrHisGlyValAsnIleAsnAspThrGluLysMetPheProLeuArgValTyrT : 169 !!! !:!!! !..!||| !!.!:!!! !:!!|||:!:||||||:!!! ...|||| ThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrTyrT 203989 : ACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttatt : 204048 170 : yrPheTyrAspValThrLysSerProGlnTyrGluLeuThrTyrIleSerLeuSerIl : 188 ||...||||||::::!!:!!!!!||| ! !:!|||:!!! !!:!:!! !! !! ! yrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAl 204049 : atatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGC : 204105 189 : eGlyIleLeuPheAlaAlaIleThrTyrThrGlyIleAspAsnPheLeuGlyLeuLeu : 207 ! !:!!:!!!!. !|||:!! !|||! !|||:!!|||||||||!!!|||:!!||| aThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeu 204106 : CACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTG : 204162 208 : ValPheHisIleCysGlyGlnIleAspIleLeuSerThrArgLeuIleTyrLeuAsnL : 227 :!!.!!|||||||||||||||:!:!!:! !||| !!||||||||| ! !!:!!!!. IleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysH 204163 : ATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAAC : 204222 228 : ysPheValLysPheHisAsnSerLeuLysAsnCysIleTrpAsnHisThrArgLeuLe : 246 ! !!.! !! ||| !!..!! !||| !!.! :!! :!!|||..!||||||:! isLeuGluThrPheAspArgIleLeuValThrThrValGluAspHisValArgLeuIl 204223 : ATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCGACTTAT : 204279 247 : uArg : 247 !||| eArg 204280 : TAGG : 204284 vulgar: CbirOr69NI 91 247 . KQ414617.1 203816 204284 + 279 M 156 468 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203817 204284 279 + . gene_id 1 ; sequence CbirOr69NI ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203817 204284 . + . KQ414617.1 exonerate:protein2genome:local exon 203817 204284 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203817 204284 279 + . alignment_id 1 ; Query CbirOr69NI ; Align 203817 92 468 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr69NI Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 283 -> 342 Target range: 204763 -> 204940 284 : LeuIleIleGlnCysAspArgMetTyrHisAlaIleCysSerGlnLysTrpTyrAsnL : 303 ||| |||:!!! !!!:..!:!:||| !||| ! !..! :!!|||! |||| LeuSerIleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnL 204764 : ttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATT : 204821 304 : euAspSerLysLysAlaLysAsnLeuIleLeuLeuLeuIleArgThrLysValSerCy : 322 || ! |||!!.|||||||||!:!|||||||||:!!:!! !|||.!!:!! ! !! euLysSerAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLe 204822 : TGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCT : 204878 323 : sTyrIleThrAlaGlyLysValPheProMetThrMetSerThrPheCysAsnLeuVal : 341 !! !:!!||||||||||||:::||||||||||||||| !||||||||||||:!!..! uCysLeuThrAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsnValThr 204879 : CTGTTTAACCGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTCACT : 204935 342 : Lys : 342 :!! Gln 204936 : CAG : 204940 vulgar: CbirOr69NI 283 342 . KQ414617.1 204763 204940 + 141 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204764 204940 141 + . gene_id 2 ; sequence CbirOr69NI ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204764 204940 . + . KQ414617.1 exonerate:protein2genome:local exon 204764 204940 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204764 204940 141 + . alignment_id 2 ; Query CbirOr69NI ; Align 204764 284 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr63NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 353 Query range: 92 -> 248 Target range: 203816 -> 204284 93 : IleLeuProLeuLeuAsnMetIleLysAspAspTrpLeuArgProLysThrSerGluG : 112 :!!|||||||||:!!||||||||| !!!:|||||| !!:! !||||||..! | LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspPheG 203817 : CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATTTCG : 203874 113 : luArgAsnValMetIleLysGlnAlaArgIleAlaArgIleLeuThrIlePheCysCy : 131 |||||:!!|||||||||:!!!:!.!!||||||.!!||| ! !!:!|||.!. !!! luArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSerTy 203875 : AAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAGTTA : 203931 132 : sCysIleMetLeuIleSerAlaIleValIleLeuValIleProLeuPheGlyIleSer : 150 !...:!!!!:!!!! !:!!!.!!!: !!!!::!!|||:!!||| ! !||||||!!! rAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIleThr 203932 : TGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATTACC : 203988 151 : MetArgTyrArgThrAsnArgThrAspSerAspLysSerLeuProLeuGlnThrTyrT : 170 ! |||||| !||||||..!|||:!!! ! ! ||| !!!!|||:!!! ||||||| ThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrTyrT 203989 : ACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttatt : 204048 171 : yrValTyrAspLysGluLysSerProPhePheGluIleThrTyrValLeuGlnCysIl : 189 ||:::|||||| ...:!!!!!|||!:!|||||||||! !!:!:!!|||||| yrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAl 204049 : atatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGC : 204105 190 : eSerAlaThrLeuSerGlyPheMetTyrSerGlyThrAspSerPheLeuThrPheLeu : 208 !!!! !..!|||! !!.!.!! |||! !|||..!|||!:!|||!!! !.!.||| aThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeu 204106 : CACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTG : 204162 209 : ValPheHisValCysGlyGlnLeuGluAsnLeuLysLysArgValIleAspLeuAspL : 228 :!!.!!|||:!!|||||||||||||||||||||:::! !|||:!! !:!!:!! ! IleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysH 204163 : ATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAAC : 204222 229 : ysPheHisAspPheArgAsnThrLeuSerTyrAsnIleGlnAspHisIleArgLeuIl : 247 ! !!..!. !||| !..!! !||| ! !!..:!!:!!||||||:!:|||||||| isLeuGluThrPheAspArgIleLeuValThrThrValGluAspHisValArgLeuIl 204223 : ATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCGACTTAT : 204279 248 : eArg : 248 |||| eArg 204280 : TAGG : 204284 vulgar: CbirOr63NTE 92 248 . KQ414617.1 203816 204284 + 353 M 156 468 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203817 204284 353 + . gene_id 1 ; sequence CbirOr63NTE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203817 204284 . + . KQ414617.1 exonerate:protein2genome:local exon 203817 204284 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203817 204284 353 + . alignment_id 1 ; Query CbirOr63NTE ; Align 203817 93 468 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr63NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 163 Query range: 322 -> 374 Target range: 204778 -> 204934 323 : GluAlaValTyrAspAlaAlaTyrGluTyrAsnTrpTyrThrLeuGluProLysLysA : 342 |||! !||||||! !||||||||||||! !.!.|||! !.!|||:!! !!!!.|||| GluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsnLysA 204779 : GAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAACAAGG : 204836 343 : laArgAsnIleLeuMetIleMetIleArgAlaAsnLysProLeuTyrLeuThrAlaGl : 361 ||!:!!:!:!::!!:!:|||||| !||||||.!.!:!||||||! !||||||||||| laLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuThrAlaGl 204837 : CGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGcagg : 204893 362 : yLysLeuPheProLeuThrMetAlaMetPheCysAsnLeu : 374 |||||||||||||::!|||||| !! !|||||||||:!! yLysLeuPheProMetThrMetLeuThrPheCysAsnVal 204894 : aaaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: CbirOr63NTE 322 374 . KQ414617.1 204778 204934 + 163 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204779 204934 163 + . gene_id 2 ; sequence CbirOr63NTE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204779 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204779 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204779 204934 163 + . alignment_id 2 ; Query CbirOr63NTE ; Align 204779 323 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr83NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 437 Query range: 1 -> 244 Target range: 203453 -> 204284 2 : PheGluTrpAlaValGlnLeuAsnArgAlaSerLeuHisLeuLeuGlyIleTrpProA : 21 |||||||||||||||!:!:!!||||||:!!||||||...:!!:!!|||:!!||| !. PheGluTrpAlaValArgMetAsnArgSerSerLeuArgIleIleGlyLeuTrpPheG 203454 : TTCGAATGGGCAGTTCGGATGAATCGCTCTAGTTTGAGAATAATTGGTCTTTGGTTTG : 203511 22 : snProGluGluAsnProLysLysLysLeuMetSerAsnIleArg<->ValPheValTh : 39 !. !!!:.!. ! |||...::: ...:::||| :!! :!!.. luGluAspHisAlaGlyThrMetLysPheLeuArgLysLeuArgAsnMetGlyIleVa 203512 : AAGAAGATCACGCTggaacgatgaaatttttaagaaaattacgcAATATGGGGATCGT : 203568 40 : rPheValLeuValIleSerLeuLeuValProSerIleHisSerLeuIleLysIleArg : 58 !.!.:!!:!!:!!.!! !! !:!!:!!|||!!!:!!:!!|||||||||||| ! !! lLeuIleIleLeuPheValCysValLeuProCysLeuTyrSerLeuIleLysGlnCys 203569 : GCTGATAATCCTCTTCGTTTGTGTACTTCCTTGCCTCTACTCTTTGATCAAACAATGT : 203625 59 : SerAspIleMetMetThrIleAspAsnLeuGlnTyrThrLeuProValLeuSerAlaI : 78 ..!..!:!!||| !..!||||||||||||..!||||||:!!|||:!! !! !.!!: AspSerLeuMetAlaValIleAspAsnLeuSerTyrThrIleProLeuThrIleThrL 203626 : GACAGTTTAATGGCGGTGATAGATAATCTTTCATATACTATTCCTTTGACAATAACAC : 203685 79 : leIleArgLeuAlaIlePheTrpTrpArgLysGlu{V} >>>> Target Intron : 90 !:!!:!:!! ! !:!!.!.! ! ! !:!||||||{|} 93 bp euMetLysTyrIleValIleLeuSerLysLysGlu{V}++ 203686 : TGATGAAGTATATCGTTATATTGAGTAAAAaggaa{g}gt.................. : 203724 91 : 1 >>>> {al}LeuMetProIleMetAsnMetValMetGluAspTrpLeuLysSer : 105 {||}|||:!!|||:!!:!:||||||:!! !||||||||| !|||! ! ++{al}LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeu 203725 : .......ag{TT}CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTG : 203859 106 : LysThrIleTyrGluArgAsnThrMetIleLysTrpAlaLeuArgGluArgIleIleI : 125 |||||| !!:!||||||:!!..!||||||:!! ! .!!! !! ! ||| !! !! LysThrAspPheGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrS 203860 : AAAACGGATTTCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCA : 203919 126 : leThrIleThrTyrLeuIleIleMetMetValIleIleLeuLeuPheGlyMetSerIl : 144 !! !:!:!:!||| !:!!|||.!.! !.!:!!!!:!!!:!!.!.! !:!: !!! erIleLeuSerTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProAr 203920 : GTATACTGAGTTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAG : 203976 145 : ePheGlyLysSerMetArgLeuThrSerAsnIleThrAspSerTyrArgSerLeuPro : 163 ! !|||! !!!! |||! !..!!!!||| !|||:!!! ! ! !:! !!!!||| gThrGlyIleThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPhePro 203977 : AACCGGTATTACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCG : 204033 164 : ValGlnThrTyrTyrIleTyrAspValThrLysArgProGlnTyrGluLeuThrIleI : 183 |||! ||||||||||||||||||::::!!:!!! !||| ! !:!|||:!!! !.!!: ValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheL 204034 : GTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTC : 204093 184 : leSerGlnTyrIleSerLeuIleIleAlaAlaMetLeuTyrThrGlyIleAspAsnPh : 202 !! !||| !!!!|||:!::!! !|||:!:! !|||! !|||:!!|||||||| euLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPh 204094 : TCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTT : 204150 203 : ePheGlyLeuLeuValPheHisIleCysGlyGlnLeuAspIleMetArgTyrArgLeu : 221 |||||||:!!|||:!!.!!||||||||||||||||||!!:! !:!:||| |||||| ePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeu 204151 : CTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTT : 204207 222 : LysHis<->SerHis<->GlnLysPheArgAlaIleLeuArgCysSerValMetTyrH : 239 !:!! !.!||| :!!! ||| ! !|||||| ! !!!!||| !!| AlaAsnIleLysHisLeuGluThrPheAspArgIleLeuValThrThrValGluAspH 204208 : GCAAACATAAAACATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATC : 204267 240 : isLeuArgLeuLeuArg : 244 ||:!!||||||:!!||| isValArgLeuIleArg 204268 : ATGTGCGACTTATTAGG : 204284 vulgar: CbirOr83NTE 1 244 . KQ414617.1 203453 204284 + 437 M 34 102 G 0 3 M 54 162 S 0 1 5 0 2 I 0 89 3 0 2 S 1 2 M 133 399 G 0 3 M 2 6 G 0 3 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203454 204284 437 + . gene_id 1 ; sequence CbirOr83NTE ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203454 203721 . + . KQ414617.1 exonerate:protein2genome:local exon 203454 203721 . + . insertions 3 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 203722 203723 . + . intron_id 1 ; splice_site "gt" KQ414617.1 exonerate:protein2genome:local intron 203722 203814 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 203813 203814 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 203815 204284 . + . KQ414617.1 exonerate:protein2genome:local exon 203815 204284 . + . insertions 6 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203454 204284 437 + . alignment_id 1 ; Query CbirOr83NTE ; Align 203454 2 102 ; Align 203559 36 162 ; Align 203817 91 399 ; Align 204219 224 6 ; Align 204228 226 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr83NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 291 -> 371 Target range: 204400 -> 204934 292 : SerLeuSerPheLeuIleIleLeuAlaLeuLeuPheHisMetGlyIleTyrCysAlaV : 311 |||:!!! ! :!!:!!:!!|||||||||||||||:!!.!.|||! !!:!..!..!: SerIlePheThrMetLeuValLeuAlaLeuLeuPheTyrPheGlyThrPheAlaCysI 204401 : AGTATATTTACGATGTTAGTCCTCGCGCTGTTATTCTATTTCGGCACATTTGCTTGCA : 204458 312 : alGlyGluAlaLeuIleSerLys >>>> Target Intron 1 >>>> IleAsp : 320 !! !! ! !|||:!!! !! 294 bp !!!: leTyrGlyLeuLeuLeuMetThr++ ++SerGlu 204459 : TTTATGGACTATTATTAATGACCgt.........................agTCCGAA : 204779 321 : GlyIleHisTyrAlaAlaTyrAspCysLysTrpTyrSerLeuAlaProLysGluAlaL : 340 ! !:!!:!! !|||||||||!!:|||:!!|||! !:!||| ! !!!!.:!!|||| GluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsnLysAlaL 204780 : GAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAACAAGGCGA : 204839 341 : ysAspLeuIleProPheIleIleLysPheSerGluProValTyrPheThrAlaGlyLy : 359 ||..!|||||| !.!!!!: !!:! !..!..!|||:!!! !!!.||||||||||| ysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuThrAlaGlyLy 204840 : AAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGcaggaaa : 204896 360 : sValPheProIleThrMetAlaMetPheCysAsnLeu : 371 |:::||||||:::|||||| !! !|||||||||:!! sLeuPheProMetThrMetLeuThrPheCysAsnVal 204897 : attatttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: CbirOr83NTE 291 371 . KQ414617.1 204400 204934 + 149 M 27 81 5 0 2 I 0 290 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204401 204934 149 + . gene_id 2 ; sequence CbirOr83NTE ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 204401 204481 . + . KQ414617.1 exonerate:protein2genome:local exon 204401 204481 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 204482 204483 . + . intron_id 1 ; splice_site "GT" KQ414617.1 exonerate:protein2genome:local intron 204482 204775 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 204774 204775 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 204776 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204776 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204401 204934 149 + . alignment_id 2 ; Query CbirOr83NTE ; Align 204401 292 81 ; Align 204776 319 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr79NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 406 Query range: 1 -> 244 Target range: 203453 -> 204284 2 : PheGluTrpAlaValLysLeuAsnArgAlaGlyLeuAsnLeuIleGlyLeuTrpProT : 21 |||||||||||||||::!:!!||||||:!!.!!|||!..:!!|||||||||||| ! PheGluTrpAlaValArgMetAsnArgSerSerLeuArgIleIleGlyLeuTrpPheG 203454 : TTCGAATGGGCAGTTCGGATGAATCGCTCTAGTTTGAGAATAATTGGTCTTTGGTTTG : 203511 22 : hrProGlnGluSerThrArgGlnArgLeuIleAsnAsnIleArgIleValPheThrPh : 40 ! !.!..!.:!! ...:::...:::......:::|||! !:!! ! ! ! luGluAspHisAlaGlyThrMetLysPheLeuArgLysLeuArgAsnMetGlyIleVa 203512 : AAGAAGATCACGCTggaacgatgaaatttttaagaaaattacgcAATATGGGGATCGT : 203568 41 : eLeuValValThrSerLeuLeuVal<->ProSerIleHisSerLeuIleLysThrHis : 58 |||:!!:!! !! !:!!! !||| |||!!!:!!:!!|||||||||||| ! ! lLeuIleIleLeuPheValCysValLeuProCysLeuTyrSerLeuIleLysGlnCys 203569 : GCTGATAATCCTCTTCGTTTGTGTACTTCCTTGCCTCTACTCTTTGATCAAACAATGT : 203625 59 : SerAspIleMetLeuThrIleAspAsnLeuGlnIleThrLeuProValLeuSerSerI : 78 ..!..!:!!||| !..!||||||||||||..! !|||:!!|||:!! !! !!!!: AspSerLeuMetAlaValIleAspAsnLeuSerTyrThrIleProLeuThrIleThrL 203626 : GACAGTTTAATGGCGGTGATAGATAATCTTTCATATACTATTCCTTTGACAATAACAC : 203685 79 : leIleArgLeuProIlePheTrpArgArgLysLys{A} >>>> Target Intron : 90 !:!!:!:!! ! !:!!.!.! !!!!!:!|||:::{!} 93 bp euMetLysTyrIleValIleLeuSerLysLysGlu{V}++ 203686 : TGATGAAGTATATCGTTATATTGAGTAAAAaggaa{g}gt.................. : 203724 91 : 1 >>>> {la}LeuThrLeuIleIleAsnMetIleValGlnAspTrpLeuThrThr : 105 {.!}||| !! !:!!:!!|||||||||!.!:!!|||||| !! ! ! ++{al}LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeu 203725 : .......ag{TT}CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTG : 203859 106 : LysAsnIleArgGluArgLysThrMetIleLysTrpAlaSerArgAlaArgIlePheI : 125 |||!.. ! !|||||| ! ..!||||||:!! ! .!! !!! !.!!||| ! !! LysThrAspPheGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrS 203860 : AAAACGGATTTCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCA : 203919 126 : leIleCysThrTyrIleIleIleValThrSerIleIleIleMetPheValIleProIl : 144 !||| !:!||| :!!||| !!|||:!!:!!!!:.!!|||.!.|||:!!|||! erIleLeuSerTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProAr 203920 : GTATACTGAGTTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAG : 203976 145 : ePheGlyLysSerMetThrLeuAlaLeuAsnIleThrAspSerGlyLysSerLeuPro : 163 ! !|||! !!!! ! !! !!.! !||| !|||:!!! ! !||| !!!!||| gThrGlyIleThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPhePro 203977 : AACCGGTATTACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCG : 204033 164 : LeuSerThrPheTyrIleTyrAspValThrLysArgProGlnTyrGluLeuThrIleI : 183 :!! ! |||:::||||||||||||::::!!:!!! !||| ! !:!|||:!!! !.!!: ValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheL 204034 : GTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTC : 204093 184 : leAsnGlnCysIleSerMetIleThrAlaAlaIleLeuTyrThrGlyIleAspAsnPh : 202 !! !||| !!!!:!::!: ! !|||:!!! !|||! !|||:!!|||||||| euLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPh 204094 : TCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTT : 204150 203 : ePheGlyLeuLeuValPheHisIleCysGlyGlnLeuAsnIleValArgAsnArgLeu : 221 |||||||:!!|||:!!.!!||||||||||||||||||.!.! !:!!|||!..|||||| ePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeu 204151 : CTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTT : 204207 222 : LysHis<->SerHis<->LysAsnPheHisAlaValLeuArgSerSerValArgTyrH : 239 !:!! !.!||| :!!!.!||| !! !:!!||| !!!!!!!|||..! !!| AlaAsnIleLysHisLeuGluThrPheAspArgIleLeuValThrThrValGluAspH 204208 : GCAAACATAAAACATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATC : 204267 240 : isIleArgLeuLeuArg : 244 ||:!:||||||:!!||| isValArgLeuIleArg 204268 : ATGTGCGACTTATTAGG : 204284 vulgar: CbirOr79NTE 1 244 . KQ414617.1 203453 204284 + 406 M 47 141 G 0 3 M 41 123 S 0 1 5 0 2 I 0 89 3 0 2 S 1 2 M 133 399 G 0 3 M 2 6 G 0 3 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203454 204284 406 + . gene_id 1 ; sequence CbirOr79NTE ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203454 203721 . + . KQ414617.1 exonerate:protein2genome:local exon 203454 203721 . + . insertions 3 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 203722 203723 . + . intron_id 1 ; splice_site "gt" KQ414617.1 exonerate:protein2genome:local intron 203722 203814 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 203813 203814 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 203815 204284 . + . KQ414617.1 exonerate:protein2genome:local exon 203815 204284 . + . insertions 6 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203454 204284 406 + . alignment_id 1 ; Query CbirOr79NTE ; Align 203454 2 141 ; Align 203598 49 123 ; Align 203817 91 399 ; Align 204219 224 6 ; Align 204228 226 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr79NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 313 -> 371 Target range: 204760 -> 204934 314 : AlaLeuMetThrGluIleAsnGlyIleHisTyrAlaValTyrAspCysGluTrpTyrI : 333 :::||| !! !:!! !.!.! !:!!:!! !|||!.!|||!!:|||||||||! ! SerLeuSerIleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuA 204761 : tctttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGA : 204818 334 : leLeuAspProLysAsnAlaLysAspLeuIleProPheIleIleLysValSerGluPr : 352 !||| ! !!!!.!!.||||||..!|||||| !.!!!!: !!:!!.!..!..!|| snLeuLysSerAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgPr 204819 : ATTTGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCC : 204875 353 : oIleTyrPheThrAlaGlyLysValPheProIleThrMetAlaMetLeuGlyAsnLeu : 371 |:!!! !!!.||||||||||||:::||||||:::|||||| !! !!!! !!|||:!! oLeuCysLeuThrAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsnVal 204876 : GCTCTGTTTAACCGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204932 vulgar: CbirOr79NTE 313 371 . KQ414617.1 204760 204934 + 110 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204761 204934 110 + . gene_id 2 ; sequence CbirOr79NTE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204761 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204761 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204761 204934 110 + . alignment_id 2 ; Query CbirOr79NTE ; Align 204761 314 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr84NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 449 Query range: 90 -> 374 Target range: 203813 -> 204934 91 : ThrLeuIleProIleValAspMetIleAlaLysAspTrpLeuLysProLysSerValA : 110 ..!|||:!:|||:!!|||:!!|||||||||:!!|||||| !||| !|||!!!! ! ValLeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspP 203814 : GTTCTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATT : 203871 111 : rgGluArgAsnThrMetValIleTrpAlaLeuArgAlaArgIleIleIleIleCysSe : 129 !||||||:!!..!|||:!! ! ! .!!! !! !.!!||| !! !! !||| || heGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSe 203872 : TCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAG : 203928 130 : rTyrValSerMetAlaValAlaTyrIleIlePheIleThrMetProIlePheGlyLys : 148 ||||!.!! !!!: !..!||| !!:.!!.!.|||..!:!:|||! ! !|||! rTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIle 203929 : TTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATT : 203985 149 : SerMetArgLeuIleThrAsnIleThrAspProGlyArgProMetLeuLeuGlnSerT : 168 !!!! |||! !:!!|||||| !|||:!! ! !!:!! !.!.! !:!!! :::| ThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrT 203986 : ACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaactt : 204045 169 : yrTyrIleTyrAspValThrLysArgProGlnPheGluLeuThrPheIleSerGlnAl : 187 ||||||||||||||::::!!:!!! !||| ! ||||||:!!! !|||:!! !||| yrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMe 204046 : attatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAAT : 204102 188 : aPheSerThrPheValAlaValLeuProTyrThrGlyIleAspAsnPheLeuGlyLeu : 206 ! !!!! ! ! :!! !!.!||| !|||! !|||:!!|||||||||!!!|||:!! tAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIle 204103 : GGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATA : 204159 207 : LeuThrPheHisIleCysGlyGlnLeuValIleLeuLysAsnArgPheIleHisLeuH : 226 |||! !.!!||||||||||||||||||! !! !|||:::!..|||.!! !:!!:!! LeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleL 204160 : TTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAA : 204219 227 : isAspTyrLysAspPheHisGluIleLeuLysAspCysValThrTyrHisIleArgLe : 245 ! !!! :!! !||| !!...|||||| ! ! ||| ! !!|||:!:||||| ysHisLeuGluThrPheAspArgIleLeuValThrThrValGluAspHisValArgLe 204220 : AACATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCGACT : 204276 246 : uLeu{Ar} >>>> Target Intron 1 >>>> {g}AlaIleAspValIleGlu : 253 |:!!{||} 98 bp {|}|||:!!|||||||||||| uIle{Ar}++ ++{g}AlaValAspValIleGlu 204277 : TATT{AG}gt.........................ag{A}GCGGTCGATGTGATCGAA : 204398 254 : AsnValTyrAsnMetIleLeuLeuValLeuPheLeuTyrPheGlyIleLeuPheAlaP : 273 !:!:!!!:!!..|||:!!:!!|||!.!|||!!.!!!|||||||||! !!!! !..!. SerIlePheThrMetLeuValLeuAlaLeuLeuPheTyrPheGlyThrPheAlaCysI 204399 : AGTATATTTACGATGTTAGTCCTCGCGCTGTTATTCTATTTCGGCACATTTGCTTGCA : 204458 274 : heTyrGlyPheLeuLeuIleSer >>>> Target Intron 2 >>>> LeuPhe : 282 !!||||||.!.||||||!!:!!! 174 bp !!!||| leTyrGlyLeuLeuLeuMetThr++ +-PhePhe 204459 : TTTATGGACTATTATTAATGACCgt.........................atTTCTTC : 204659 283 : GlnAspLysGluAspAspValSerMetThrArgLeuLeuTyrLeuIleValIleIleM : 302 :!! ::: ..! !||||||..! !!:!!!!! !!! :!!! !:!: Lys---ArgLeuSerThrValSerGlnAspLysPhe******IleArg***ValSerA 204660 : AAA---CGTCTCTCTACTGTATCACAGGACAAATTTTAGTAAATCAGGTAAGTttcag : 204716 303 : etValLeuPheAlaHisMetCysLeuTyrCysAlaValGlyGluMetLeuMetAlaGl : 321 |||||| ::: !! !! ::: ... ||| ! !:! spPheLeuPhePheProLeuTyrTyrLeuSerSerPheSerIleSerLeuSerIleLy 204717 : attttcttttctttcctctatACTACTTgtcttcattttcaatttctttgtCGATAAA : 204773 322 : nCysAsnGluIleHisPheAlaThrTyrAsnHisGluTrpTyrPheLeuAspSerLys : 340 !! !.!.|||:!!:!! !!|||.!!|||.!. !||||||! !||| ! |||!!. sSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsn 204774 : GTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAAC : 204830 341 : GluAlaLysAsnLeuIleProPheMetIleArgAlaSerGlnProIleHisPheThrA : 360 :!!||||||!:!|||||| !.!!||| !||||||..!::!|||:!! !!!.|||| LysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuThrA 204831 : AAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCG : 204890 361 : laGlyLysValPheProMetThrMetAlaThrPheCysAsnLeu : 374 ||||||||:::||||||||||||||| !||||||||||||:!! laGlyLysLeuPheProMetThrMetLeuThrPheCysAsnVal 204891 : caggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: CbirOr84NTE 90 374 . KQ414617.1 203813 204934 + 449 M 156 468 S 0 2 5 0 2 I 0 94 3 0 2 S 1 1 M 33 99 5 0 2 I 0 170 3 0 2 M 3 9 G 1 0 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203814 204934 449 + . gene_id 1 ; sequence CbirOr84NTE ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203814 204283 . + . KQ414617.1 exonerate:protein2genome:local exon 203814 204283 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 204284 204285 . + . intron_id 1 ; splice_site "GT" KQ414617.1 exonerate:protein2genome:local intron 204284 204381 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 204380 204381 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 204382 204481 . + . KQ414617.1 exonerate:protein2genome:local exon 204382 204481 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 204482 204483 . + . intron_id 2 ; splice_site "GT" KQ414617.1 exonerate:protein2genome:local intron 204482 204655 . + . intron_id 2 KQ414617.1 exonerate:protein2genome:local splice3 204654 204655 . + . intron_id 1 ; splice_site "AT" KQ414617.1 exonerate:protein2genome:local cds 204656 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204656 204934 . + . insertions 0 ; deletions 1 KQ414617.1 exonerate:protein2genome:local similarity 203814 204934 449 + . alignment_id 1 ; Query CbirOr84NTE ; Align 203814 91 468 ; Align 204383 248 99 ; Align 204656 281 9 ; Align 204665 285 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr66NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 287 Query range: 90 -> 247 Target range: 203813 -> 204284 91 : AlaLeuValProIleIleAsnMetIleMetGluAspTrpLeuLysArgLysSerValT : 110 !.!|||:!!|||:!!:!!||||||||| !||||||||| !||| !|||!!!! !! ValLeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspP 203814 : GTTCTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATT : 203871 111 : yrGluArgAsnThrMetIleThrTrpAlaPheArgAlaArgIleIleIleThrCysAl : 129 :!||||||:!!..!|||||| ! ! .!! ! !.!!||| !! !! !! ! :: heGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSe 203872 : TCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAG : 203928 130 : aTyrValSerLeuGlyValAlaTyrIleIleLeuIleGlyValProIlePheGlyLys : 148 !|||!.!! !:!! !..!||| !!:.!!:!!|||! !:!!|||! ! !|||! rTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIle 203929 : TTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATT : 203985 149 : SerMetArgLeuThrSerAsnIleThrAspProGlyArgProMetProLeuGlnThrT : 168 !!!! |||! !..!!!!||| !|||:!! ! !!:!! !.!.|||:!!! |||| ThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrT 203986 : ACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaactt : 204045 169 : yrTyrIleTyrAspIleThrLysArgProGlnPheGluLeuThrPheLeuSerGlnIl : 187 |||||||||||||||||:!!:!!! !||| ! ||||||:!!! !|||||| !|||!! yrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMe 204046 : attatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAAT : 204102 188 : eIleSerCysIlePheAlaLeuIleProTyrThrAlaIleAspAsnPheLeuGlyLeu : 206 : !!!!! :!:!!. ! !:!! !|||! !!.!:!!|||||||||!!!|||:!! tAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIle 204103 : GGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATA : 204159 207 : LeuThrPheHisIleCysGlyGlnLeuIleIleLeuLysAsnArgLeuIleHisIleA : 226 |||! !.!!|||||||||||||||||| !! !|||:::!..|||||| !:!!|||! LeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleL 204160 : TTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAA : 204219 227 : snGluGlnLysAsnPheHisGluGluLeuLysAspCysIleIleCysHisIleArgLe : 245 !..!. !:!!!.!||| !!... ||| ! ! :!! ! !|||:!:||||| ysHisLeuGluThrPheAspArgIleLeuValThrThrValGluAspHisValArgLe 204220 : AACATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCGACT : 204276 246 : uLeuArg : 247 |:!!||| uIleArg 204277 : TATTAGG : 204284 vulgar: CbirOr66NTE 90 247 . KQ414617.1 203813 204284 + 287 M 157 471 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203814 204284 287 + . gene_id 1 ; sequence CbirOr66NTE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203814 204284 . + . KQ414617.1 exonerate:protein2genome:local exon 203814 204284 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203814 204284 287 + . alignment_id 1 ; Query CbirOr66NTE ; Align 203814 91 471 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr66NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 317 -> 374 Target range: 204763 -> 204934 318 : LeuMetAlaGlnCysAsnGluIleHisPheAlaValTyrAsnHisGluTrpTyrPheL : 337 ||| ! !:!!! !.!.|||:!!:!! !!|||!.!|||.!. !||||||! !| LeuSerIleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnL 204764 : ttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATT : 204821 338 : euAspAlaLysGluAlaArgLysLeuIleProPheMetMetArgAlaGlyGlnProIl : 356 || ! :!!!!.:!!|||!:!!..|||||| !.!!||| |||||| !::!|||:! euLysSerAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLe 204822 : TGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCT : 204878 357 : eTyrTyrThrAlaGlyLysValPheProIleThrMetAlaThrPheCysAsnLeu : 374 !! !! ||||||||||||:::||||||:::|||||| !||||||||||||:!! uCysLeuThrAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsnVal 204879 : CTGTTTAACCGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: CbirOr66NTE 317 374 . KQ414617.1 204763 204934 + 136 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204764 204934 136 + . gene_id 2 ; sequence CbirOr66NTE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204764 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204764 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204764 204934 136 + . alignment_id 2 ; Query CbirOr66NTE ; Align 204764 318 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr86NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 354 Query range: 91 -> 251 Target range: 203816 -> 204296 92 : IleLeuLeuValLeuAsnMetIleLysAsnAspTrpLeuLysProMetThrSerGluG : 111 :!!|||! !:!!:!!||||||||| !.!.|||||| !||| !! |||..! | LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspPheG 203817 : CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATTTCG : 203874 112 : luArgAsnValMetIleLysGlnAlaArgIleAlaArgIleLeuThrLeuLeuSerCy : 130 |||||:!!|||||||||:!!!:!.!!||||||.!!||| ! !!:!:!!||||||! luArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSerTy 203875 : AAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAGTTA : 203931 131 : sLeuValValGluMetPheAlaIleIleThrSerIleLeuProIlePheGlyIleSer : 149 ! !:!!:!! ! !.!!!:.!!! !! !:!!||||||! ! !||||||!!! rAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIleThr 203932 : TGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATTACC : 203988 150 : MetArgTyrArgThrAsnArgThrAspProGlyLysIleLeuProLeuGlnThrTyrT : 169 ! |||||| !||||||..!|||:!! ! !|||:!!!!!|||:!!! ||||||| ThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrTyrT 203989 : ACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttatt : 204048 170 : yrLeuTyrAspValAsnAsnSerProLeuTyrGluLeuThrPheValLeuGlnSerLe : 188 ||:::||||||:::::!.!.!!!|||! !!:!|||:!!! !|||:!!||||||! ! yrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAl 204049 : atatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGC : 204105 189 : uSerMetIleValValAlaThrIleTyrThrGlyProAspThrPheMetSerLeuLeu : 207 !!!!:!::!::!!:!!||| ! !|||! !||| !|||!.!|||.!..!!:!!||| aThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeu 204106 : CACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTG : 204162 208 : ValPheHisIleCysGlyGlnLeuLysAsnLeuLysAlaArgIleArgAsnLeuAspG : 227 :!!.!!||||||||||||||||||:!!||||||:::.!!|||:!! !|||:!! ! ! IleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysH 204163 : ATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAAC : 204222 228 : lnLeuAsnAsnPheProAspAlaLeuSerAlaSerValLysAspHisIleArgLeuLe : 246 !.|||.!.!.!||| ! ! !||| !.!!!!!|||:!!||||||:!:||||||:! isLeuGluThrPheAspArgIleLeuValThrThrValGluAspHisValArgLeuIl 204223 : ATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCGACTTAT : 204279 247 : uArgAlaIleIleIle : 251 !||| !! !:!!||| eArgPheAsnValIle 204280 : TAGGTTTAACGTTATC : 204296 vulgar: CbirOr86NTE 91 251 . KQ414617.1 203816 204296 + 354 M 160 480 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203817 204296 354 + . gene_id 1 ; sequence CbirOr86NTE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203817 204296 . + . KQ414617.1 exonerate:protein2genome:local exon 203817 204296 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203817 204296 354 + . alignment_id 1 ; Query CbirOr86NTE ; Align 203817 92 480 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr86NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 316 -> 373 Target range: 204763 -> 204934 317 : LeuValIleGlnSerGluGlyIleTyrGluAlaValCysGlnTyrGluTrpTyrLysL : 336 ||| !|||:!!||||||! !:!!|||! |||!.!! !:!!! !||||||! !!.| LeuSerIleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnL 204764 : ttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATT : 204821 337 : euLysProTrpGlnAlaLysAspPheLeuAsnIleMetIleGlnAlaArgArgProLe : 355 ||||| !! :!!||||||..!!!.:!! |||||| !::!|||!:!|||||||| euLysSerAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLe 204822 : TGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCT : 204878 356 : uTyrLeuThrAlaGlyLysLeuPheProMetThrIleAlaThrLeuCysAsnLeu : 373 |! !||||||||||||||||||||||||||||||!!: !|||!!!||||||:!! uCysLeuThrAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsnVal 204879 : CTGTTTAACCGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: CbirOr86NTE 316 373 . KQ414617.1 204763 204934 + 152 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204764 204934 152 + . gene_id 2 ; sequence CbirOr86NTE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204764 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204764 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204764 204934 152 + . alignment_id 2 ; Query CbirOr86NTE ; Align 204764 317 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr75PN Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 359 Query range: 0 -> 240 Target range: 203453 -> 204284 1 : PheGluTrpAlaValLysLeuAsnArgAlaGlyLeuThrLeuIleGlyIleTrpProA : 20 |||||||||||||||::!:!!||||||:!!.!!|||! !:!!||||||:!!||| !! PheGluTrpAlaValArgMetAsnArgSerSerLeuArgIleIleGlyLeuTrpPheG 203454 : TTCGAATGGGCAGTTCGGATGAATCGCTCTAGTTTGAGAATAATTGGTCTTTGGTTTG : 203511 21 : spProGluGluSerProArgGluLysValMetSerAsnIleArg<->ValPheValTh : 38 !: !!!:.!.:!! ||| ::: ...:::||| :!! :!!.. luGluAspHisAlaGlyThrMetLysPheLeuArgLysLeuArgAsnMetGlyIleVa 203512 : AAGAAGATCACGCTggaacgatgaaatttttaagaaaattacgcAATATGGGGATCGT : 203568 39 : rPheLeuLeuValIleSerLeuLeuValProSerIleHisSerLeuIleLysThrHis : 57 !.!.:!!:!!:!!.!! !! !:!!:!!|||!!!:!!:!!|||||||||||| ! ! lLeuIleIleLeuPheValCysValLeuProCysLeuTyrSerLeuIleLysGlnCys 203569 : GCTGATAATCCTCTTCGTTTGTGTACTTCCTTGCCTCTACTCTTTGATCAAACAATGT : 203625 58 : SerAspIleMetLeuThrThrAspAsnLeuGlnTyrThrLeuProAlaLeuAsnThrI : 77 ..!..!:!!||| !..!! !|||||||||..!||||||:!!||| ! !! |||: AspSerLeuMetAlaValIleAspAsnLeuSerTyrThrIleProLeuThrIleThrL 203626 : GACAGTTTAATGGCGGTGATAGATAATCTTTCATATACTATTCCTTTGACAATAACAC : 203685 78 : leIleLysPheProIlePheTrpTrpLysLysLys{A} >>>> Target Intron : 89 !:!!:|||!:! !:!!.!.! ! ! ||||||:::{!} 93 bp euMetLysTyrIleValIleLeuSerLysLysGlu{V}++ 203686 : TGATGAAGTATATCGTTATATTGAGTAAAAaggaa{g}gt.................. : 203724 90 : 1 >>>> {la}LeuAlaSerIleValLysMetIleValGluAspTrpLeuLysSer : 104 {.!}||| ! !!:!!|||!!.||||||!.!||||||||| !|||! ! ++{al}LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeu 203725 : .......ag{TT}CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTG : 203859 105 : LysThrIleTyrGluLysAsnAlaMetIleLysTrpAlaLeuArgAlaArgValIleI : 124 |||||| !!:!|||!:!:!!!.!||||||:!! ! .!!! !! !.!!|||!.!! !! LysThrAspPheGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrS 203860 : AAAACGGATTTCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCA : 203919 125 : leThrCysThrTyrPheIleIleAlaMetAlaPheIleIlePheIleGlyMetProMe : 143 !! ! !:!||| :!!||| !! ||| ! !!:.!!.!.|||! !:!:|||! erIleLeuSerTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProAr 203920 : GTATACTGAGTTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAG : 203976 144 : tPheGlyLysSerMetThrLeuAlaLeuAsnIleThrAspSerGlyArgSerMetAla : 162 !|||! !!!! ! !! !!.! !||| !|||:!!! ! !!:! !.!. !! gThrGlyIleThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPhePro 203977 : AACCGGTATTACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCG : 204033 163 : AlaProThrTyrTyrIleTyrAspValThrLysSerProGlnTyrGluLeuLeuValA : 182 !.!|||||||||||||||||||||::::!!:!!!!!||| ! !:!|||:!!:!! !! ValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheL 204034 : GTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTC : 204093 183 : snSerSerSerArgThrValThrIleVal<-><-><->TyrThrGlyIleAspAsnPh : 198 ! !..!! ! !|||:!!..!:!!:!! |||! !|||:!!|||||||| euLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPh 204094 : TCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTT : 204150 199 : ePheGlyLeuCysValPheHisIleCysArgGlnLeuHisIleMetArgAsnArgPhe : 217 |||||||:!!! :!!.!!||||||||| !!||||||.!.! !:!:|||!..|||.!! ePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeu 204151 : CTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTT : 204207 218 : LysHis<-><->AsnHisLysTyrPheArgThrValLeuArgSerSerValLysCysH : 235 !:!! :!! :!! !||| ! !:!!||| !!!!!!!|||:!! !| AlaAsnIleLysHisLeuGluThrPheAspArgIleLeuValThrThrValGluAspH 204208 : GCAAACATAAAACATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATC : 204267 236 : isIleArgLeuLeuArg : 240 ||:!:||||||:!!||| isValArgLeuIleArg 204268 : ATGTGCGACTTATTAGG : 204284 vulgar: CbirOr75PN 0 240 . KQ414617.1 203453 204284 + 359 M 34 102 G 0 3 M 54 162 S 0 1 5 0 2 I 0 89 3 0 2 S 1 2 M 102 306 G 0 9 M 28 84 G 0 6 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203454 204284 359 + . gene_id 1 ; sequence CbirOr75PN ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203454 203721 . + . KQ414617.1 exonerate:protein2genome:local exon 203454 203721 . + . insertions 3 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 203722 203723 . + . intron_id 1 ; splice_site "gt" KQ414617.1 exonerate:protein2genome:local intron 203722 203814 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 203813 203814 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 203815 204284 . + . KQ414617.1 exonerate:protein2genome:local exon 203815 204284 . + . insertions 15 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203454 204284 359 + . alignment_id 1 ; Query CbirOr75PN ; Align 203454 1 102 ; Align 203559 35 162 ; Align 203817 90 306 ; Align 204132 192 84 ; Align 204222 220 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr82 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 406 Query range: 10 -> 255 Target range: 203450 -> 204284 11 : AspPheGluTrpAlaValLysLeuAsnArgAlaGlyLeuAsnLeuLeuGlyLeuTrpP : 30 ||||||||||||||||||::!:!!||||||:!!.!!|||!..:!!:!!||||||||| AspPheGluTrpAlaValArgMetAsnArgSerSerLeuArgIleIleGlyLeuTrpP 203451 : GACTTCGAATGGGCAGTTCGGATGAATCGCTCTAGTTTGAGAATAATTGGTCTTTGGT : 203508 31 : roAsnProGlnGluSerAlaArgGluGluValIleSerAsnIleArgValLeu<->Le : 48 !.!. !.!..!.:!!... ::: ::: ...:::||| !:!! :! heGluGluAspHisAlaGlyThrMetLysPheLeuArgLysLeuArgAsnMetGlyIl 203509 : TTGAAGAAGATCACGCTggaacgatgaaatttttaagaaaattacgcAATATGGGGAT : 203565 49 : uThrLeuLeuValMetLeuThrLeuLeuValProCysValHisSerLeuIleLysThr : 67 !..!|||:!!:!!:!:!!!..!! !:!!:!!||||||:!!:!!|||||||||||| ! eValLeuIleIleLeuPheValCysValLeuProCysLeuTyrSerLeuIleLysGln 203566 : CGTGCTGATAATCCTCTTCGTTTGTGTACTTCCTTGCCTCTACTCTTTGATCAAACAA : 203622 68 : AsnSerAspIleMetLeuThrIleAspAsnLeuGlnIleIleIleProIleLeuSerT : 87 !..!..!:!!||| !..!||||||||||||..! !! !||||||:!: !! !| CysAspSerLeuMetAlaValIleAspAsnLeuSerTyrThrIleProLeuThrIleT 203623 : TGTGACAGTTTAATGGCGGTGATAGATAATCTTTCATATACTATTCCTTTGACAATAA : 203682 88 : hrIleIleLysLeuProIlePheTrpTrpLysLysLys{A} >>>> Target Int : 100 ||:!:!!:|||! ! !:!!.!.! ! ! ||||||:::{!} 93 bp hrLeuMetLysTyrIleValIleLeuSerLysLysGlu{V}++ 203683 : CACTGATGAAGTATATCGTTATATTGAGTAAAAaggaa{g}gt............... : 203724 101 : ron 1 >>>> {la}PheThrSerIleValAsnMetIleValGluAspTrpLeuLys : 114 {.!}.!! ! !!:!!||||||||||||!.!||||||||| !||| ++{al}LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLys 203725 : ..........ag{TT}CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAG : 203856 115 : SerThrAsnIleHisGluArgLysThrMetIleLysTrpAlaLeuArgAlaArgIleP : 134 ! !! !!.. ! !|||||| ! ..!||||||:!! ! .!!! !! !.!!||| ! LeuLysThrAspPheGluArgAspValMetIleGlnArgThrArgIleThrArgAlaT 203857 : TTGAAAACGGATTTCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAA : 203916 135 : heIleThrCysSerTyrIleLeuIleThrIleGlyLeuIleIlePhePheValIleGl : 153 !! !! ! |||||| |||||| .!! ! !:!!!!:|||.!.:!!:!! hrSerIleLeuSerTyrAlaLeuIle---PheThrAlaValMetPheMetIleValLe 203917 : CCAGTATACTGAGTTATGCGTTAATA---TTTACTGCAGTAATGTTCATGATAGTCCT : 203970 154 : yProIlePheGlyLysSerMetThrLeuThrSerAsnIleThrAspSerSerArgSer : 172 !|||! ! !|||! !!!! ! !! !..!!!!||| !|||:!!! !!.!!:! ! uProArgThrGlyIleThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeu 203971 : ACCAAGAACCGGTATTACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTT : 204027 173 : LeuThrLeuProThrTyrTyrIleTyrAspValThrLysArgProGlnTyrGluLeuT : 192 !!! !!:!!|||||||||||||||||||||::::!!:!!! !||| ! !:!|||:!!! PheProValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleM 204028 : TTTCCGGTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTGAGATAA : 204087 193 : hrIleIleSerGlnCysIleSerIleThrThrThrGlyIleLeuTyrIleGlyIleAs : 211 !.!!:!! !||| !!!!:!!..! !! !!.!:!!! !|||||||||:!!|| etPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAs 204088 : TGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGA : 204144 212 : pAsnPhePheGlyLeuLeuValPheHisIleCysGlyGlnLeuAsnIleMetArgAsn : 230 |||||||||||||:!!|||:!!.!!||||||||||||||||||.!.! !:!:|||!.. pAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThr 204145 : TAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACA : 204201 231 : ArgLeu<->LysCysAsnHis<->GluAsnPheArgValValLeuArgAlaSerValM : 248 |||||| !!. !!.||| |||!.!||| ! !:!!||| !.!!!!!||| ArgLeuAlaAsnIleLysHisLeuGluThrPheAspArgIleLeuValThrThrValG 204202 : CGACTTGCAAACATAAAACATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAG : 204261 249 : etTyrHisIleArgLeuLeuArg : 255 !!|||:!:||||||:!!||| luAspHisValArgLeuIleArg 204262 : AAGATCATGTGCGACTTATTAGG : 204284 vulgar: CbirOr82 10 255 . KQ414617.1 203450 204284 + 406 M 37 111 G 0 3 M 52 156 S 0 1 5 0 2 I 0 89 3 0 2 S 1 2 M 42 126 G 1 0 M 89 267 G 0 3 M 4 12 G 0 3 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203451 204284 406 + . gene_id 1 ; sequence CbirOr82 ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203451 203721 . + . KQ414617.1 exonerate:protein2genome:local exon 203451 203721 . + . insertions 3 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 203722 203723 . + . intron_id 1 ; splice_site "gt" KQ414617.1 exonerate:protein2genome:local intron 203722 203814 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 203813 203814 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 203815 204284 . + . KQ414617.1 exonerate:protein2genome:local exon 203815 204284 . + . insertions 6 ; deletions 1 KQ414617.1 exonerate:protein2genome:local similarity 203451 204284 406 + . alignment_id 1 ; Query CbirOr82 ; Align 203451 11 111 ; Align 203565 48 156 ; Align 203817 101 126 ; Align 203943 144 267 ; Align 204213 233 12 ; Align 204228 237 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr82 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 324 -> 382 Target range: 204760 -> 204934 325 : ThrLeuMetThrGlnCysAsnGlyIleTyrTyrAlaValTyrAspTyrGluTrpTyrS : 344 :::||| !! !:!!! !.!.! !:!!||| !|||!.!|||!!:! !||||||! ! SerLeuSerIleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuA 204761 : tctttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGA : 204818 345 : erLeuAspProLysGluAlaLysAspLeuIleLeuPheMetIleLysIleArgAspPr : 363 :!||| ! !!!!.:!!||||||..!|||||||||.!!||| !!:! !!:! || snLeuLysSerAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgPr 204819 : ATTTGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCC : 204875 364 : oIleTyrPheThrAlaGlyLysIlePheProValThrMetAlaMetPheCysAsnLeu : 382 |:!!! !!!.||||||||||||:::||||||::!|||||| !! !|||||||||:!! oLeuCysLeuThrAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsnVal 204876 : GCTCTGTTTAACCGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204932 vulgar: CbirOr82 324 382 . KQ414617.1 204760 204934 + 138 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204761 204934 138 + . gene_id 2 ; sequence CbirOr82 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204761 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204761 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204761 204934 138 + . alignment_id 2 ; Query CbirOr82 ; Align 204761 325 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr61NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 490 Query range: 1 -> 247 Target range: 203453 -> 204284 2 : PheGluTrpAlaValGlnLeuAsnArgPheSerLeuLysLeuLeuGlyLeuTrpProG : 21 |||||||||||||||!:!:!!||||||! !||||||!:!:!!:!!||||||||| !| PheGluTrpAlaValArgMetAsnArgSerSerLeuArgIleIleGlyLeuTrpPheG 203454 : TTCGAATGGGCAGTTCGGATGAATCGCTCTAGTTTGAGAATAATTGGTCTTTGGTTTG : 203511 22 : luGluAlaAlaSerLeuGlnAspArgLeuAsnSerAsnLeuArgLeuPheGlyValPh : 40 |||||! ! !:!! :::... ...|||||| !.!.|||:!! ! luGluAspHisAlaGlyThrMetLysPheLeuArgLysLeuArgAsnMetGlyIleVa 203512 : AAGAAGATCACGCTggaacgatgaaatttttaagaaaattacgcAATATGGGGATCGT : 203568 41 : eIleLeuIleAsnGlyValCysThrValProSerLeuHisLeuLeuLeuLysIleTrp : 59 :!::!!||| ! !||||||..!:!!|||!!!|||:!!! !|||:!!||| !!! lLeuIleIleLeuPheValCysValLeuProCysLeuTyrSerLeuIleLysGlnCys 203569 : GCTGATAATCCTCTTCGTTTGTGTACTTCCTTGCCTCTACTCTTTGATCAAACAATGT : 203625 60 : GlyAspIleAsnAlaMetMetAspAsnPheValPheThrLeuProLeuLeuThrValS : 79 ! !..!:!!! |||:!!!!:||||||.!! !!:!|||:!!|||||| !! !..! AspSerLeuMetAlaValIleAspAsnLeuSerTyrThrIleProLeuThrIleThrL 203626 : GACAGTTTAATGGCGGTGATAGATAATCTTTCATATACTATTCCTTTGACAATAACAC : 203685 80 : erValLysLeuLeuIleLeuTrpTrpLysArgGlu{A} >>>> Target Intron : 91 !:!!|||! !:!!:!!:!!! ! ! |||!::|||{!} 93 bp euMetLysTyrIleValIleLeuSerLysLysGlu{V}++ 203686 : TGATGAAGTATATCGTTATATTGAGTAAAAaggaa{g}gt.................. : 203724 92 : 1 >>>> {la}LeuSerSerLeuMetThrMetIleAlaHisAspTrpIleLysSer : 106 {.!}|||! ! !!|||:!:!.!|||||||||.!.|||||| !|||! ! ++{al}LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeu 203725 : .......ag{TT}CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTG : 203859 107 : LysSerLysAspGluArgAsnValMetIleArgCysAlaGlnAsnAlaArgLeuIleI : 126 |||!!! ! !||||||:!!|||||||||!:! ! .!!!:!! !.!!||| !! !! LysThrAspPheGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrS 203860 : AAAACGGATTTCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCA : 203919 127 : leThrPheSerTyrIleValIlePheCysSerLeuIleIleLeuIleIleSerThrAl : 145 !! !.!.|||||| :!!|||||| !:!!:!!!!:.!!:!!|||:!! ! !! erIleLeuSerTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProAr 203920 : GTATACTGAGTTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAG : 203976 146 : aPheGlyTyrThrValThrHisValThrAsnIleThrAspThrLysLysProLeuPro : 164 ! !||| !|||..!! !:!!||||||||| !|||:!!! !||||||! !!!!||| gThrGlyIleThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPhePro 203977 : AACCGGTATTACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCG : 204033 165 : LeuGlnGlyTyrTyrIleTyrAsnThrSerValSerProGlnPheGluLeuThrPheP : 184 :!!! ||||||||||||::: |||! !!!!||| ! ||||||:!!! !|||. ValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheL 204034 : GTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTC : 204093 185 : heGlyGlnCysIleSerLeuThrMetValAlaLeuSerTyrThrSerThrAspAsnPh : 203 !! !||| !!!!|||..!:!::!!||||||!!!|||! !.!!..!|||||||| euLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPh 204094 : TCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTT : 204150 204 : eLeuGlyLeuLeuValPheHisIleCysGlyGlnLeuGluAsnLeuThrSerArgLeu : 222 |!!!|||:!!|||:!!.!!||||||||||||||||||||||||||| !!!!|||||| ePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeu 204151 : CTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTT : 204207 223 : TyrGlnMetArgGluSerLysAspPheAlaMetAlaLeuArgValAsnValThrAspH : 242 .!.!!:!:!.!.! !:!! !|||! ! !||| !..!!..||| !|||| AlaAsnIleLysHisLeuGluThrPheAspArgIleLeuValThrThrValGluAspH 204208 : GCAAACATAAAACATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATC : 204267 243 : isThrArgLeuIleArg : 247 ||..!|||||||||||| isValArgLeuIleArg 204268 : ATGTGCGACTTATTAGG : 204284 vulgar: CbirOr61NTE 1 247 . KQ414617.1 203453 204284 + 490 M 89 267 S 0 1 5 0 2 I 0 89 3 0 2 S 1 2 M 156 468 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203454 204284 490 + . gene_id 1 ; sequence CbirOr61NTE ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203454 203721 . + . KQ414617.1 exonerate:protein2genome:local exon 203454 203721 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 203722 203723 . + . intron_id 1 ; splice_site "gt" KQ414617.1 exonerate:protein2genome:local intron 203722 203814 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 203813 203814 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 203815 204284 . + . KQ414617.1 exonerate:protein2genome:local exon 203815 204284 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203454 204284 490 + . alignment_id 1 ; Query CbirOr61NTE ; Align 203454 2 267 ; Align 203817 92 468 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr70NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 278 Query range: 90 -> 246 Target range: 203816 -> 204284 91 : IleIleProIleIleSerMetIleThrGluAspTrpLeuLysSerArgAsnValGlnG : 110 :!!:!:|||:!!:!!!:!||||||.!!||||||||| !|||! !!:!!..! ! | LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspPheG 203817 : CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATTTCG : 203874 111 : luArgAsnMetMetIleThrTrpAlaGlnArgSerArgIleIleValIleSerSerTy : 129 |||||:!!:!!|||||| ! ! .!!!:!! !!!!||| !! ! !||| !||||| luArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSerTy 203875 : AAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAGTTA : 203931 130 : rIleValMetGlyIleSerCysPheCysGlyValLeuLeuProIlePheGlyLeuSer : 148 | :!!!!: !! !:!! .!.! ! !:!!:!!||||||! ! !|||:!!!!! rAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIleThr 203932 : TGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATTACC : 203988 149 : LeuThrAspGlyValAsnIleAsnAspThrGluLysIlePheProLeuArgValTyrT : 168 !! ! !!! !..!||| !!.!:!!! !:!!|||:!!||||||:!!! ...|||| ThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrTyrT 203989 : ACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttatt : 204048 169 : yrPheTyrAspValThrLysSerProGlnTyrGluLeuThrTyrIleIleLeuThrIl : 187 ||...||||||::::!!:!!!!!||| ! !:!|||:!!! !!:!:!!:!!! !! ! yrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAl 204049 : atatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGC : 204105 188 : eGlyIlePhePheThrAlaThrThrTyrThrGlyIleAspAsnPheLeuGlyLeuLeu : 206 ! !:!! ! !!.! !||| ! !|||! !|||:!!|||||||||!!!|||:!!||| aThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeu 204106 : CACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTG : 204162 207 : IlePheHisIleCysGlyGlnLeuAspIleLeuSerThrArgLeuMetTyrLeuAsnT : 226 |||.!!||||||||||||||||||!!:! !||| !!||||||||| !!:!!!!. IleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysH 204163 : ATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAAC : 204222 227 : hrPheMetLysPheHisAsnAspLeuLysAsnCysValMetAsnHisThrArgLeuLe : 245 !!!. ! ||| !!..! !||| !!.! ||| :!!|||..!||||||:! isLeuGluThrPheAspArgIleLeuValThrThrValGluAspHisValArgLeuIl 204223 : ATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCGACTTAT : 204279 246 : uArg : 246 !||| eArg 204280 : TAGG : 204284 vulgar: CbirOr70NTE 90 246 . KQ414617.1 203816 204284 + 278 M 156 468 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203817 204284 278 + . gene_id 1 ; sequence CbirOr70NTE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203817 204284 . + . KQ414617.1 exonerate:protein2genome:local exon 203817 204284 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203817 204284 278 + . alignment_id 1 ; Query CbirOr70NTE ; Align 203817 91 468 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr70NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 315 -> 374 Target range: 204763 -> 204940 316 : LeuIleIleGlnCysAspArgMetTyrTyrAlaIleCysSerGlnLysTrpTyrThrL : 335 ||| |||:!!! !!!:..!:!:||| !||| ! !..! :!!|||! !.!| LeuSerIleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnL 204764 : ttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATT : 204821 336 : euAspSerLysLysIleLysAsnLeuIleLeuLeuLeuIleArgThrLysIleProCy : 354 || ! |||!!.||| |||!:!|||||||||:!!:!! !|||.!!:!!! ||| euLysSerAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLe 204822 : TGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCT : 204878 355 : sTyrIleThrAlaGlyLysValPheProMetThrMetAlaThrPheCysAsnLeuVal : 373 !! !:!!||||||||||||:::||||||||||||||| !||||||||||||:!!..! uCysLeuThrAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsnValThr 204879 : CTGTTTAACCGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTCACT : 204935 374 : Glu : 374 :!! Gln 204936 : CAG : 204940 vulgar: CbirOr70NTE 315 374 . KQ414617.1 204763 204940 + 142 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204764 204940 142 + . gene_id 2 ; sequence CbirOr70NTE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204764 204940 . + . KQ414617.1 exonerate:protein2genome:local exon 204764 204940 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204764 204940 142 + . alignment_id 2 ; Query CbirOr70NTE ; Align 204764 316 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr62PN Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 355 Query range: 87 -> 247 Target range: 203816 -> 204296 88 : ValLeuProLeuLeuAsnMetIleLysAspAspTrpLeuArgProLysThrSerGluG : 107 :!!|||||||||:!!||||||||| !!!:|||||| !!:! !||||||..! | LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspPheG 203817 : CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATTTCG : 203874 108 : luArgAsnValMetIleLysGlnAlaGlnIleAlaArgIleLeuThrLeuLeuGlyCy : 126 |||||:!!|||||||||:!!!:!.!!!:!|||.!!||| ! !!:!:!!|||.!!! luArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSerTy 203875 : AAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAGTTA : 203931 127 : sCysIleValGluIleSerValIleIleAlaSerIleLeuProIleCysGlyIleSer : 145 !...:!!:!! ! !:!!|||!!:.!! !! !:!!||||||! ! !||||||!!! rAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIleThr 203932 : TGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATTACC : 203988 146 : MetIleTyrArgThrAsnArgThrAspProGlyUnkLeuPheProLeuGlnThrTyrT : 165 ! ! !||| !||||||..!|||:!! ! ! |||||||||:!!! ||||||| ThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrTyrT 203989 : ACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttatt : 204048 166 : yrLeuTyrAspValAsnAsnSerProLeuTyrGluLeuThrPheValLeuGlnSerPh : 184 ||:::||||||:::::!.!.!!!|||! !!:!|||:!!! !|||:!!||||||! ! yrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAl 204049 : atatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGC : 204105 185 : eSerMetValLeuAlaGlyIleMetTyrThrSerThrAspThrPheMetSerLeuLeu : 203 !!!!:!:|||||| !!.!:!! |||! !.!!..!|||!.!|||.!..!!:!!||| aThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeu 204106 : CACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTG : 204162 204 : IlePheHisValCysGlyHisLeuGluAsnLeuLysAlaArgIleArgAsnLeuGlyG : 223 |||.!!|||:!!||||||!!.||||||||||||:::.!!|||:!! !|||:!! !! IleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysH 204163 : ATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAAC : 204222 224 : lnPheAsnAspPheProAspAlaLeuSerAlaAsnValLysAspHisIleArgLeuLe : 242 !.!!..!. !||| ! ! !||| !.!!!..|||:!!||||||:!:||||||:! isLeuGluThrPheAspArgIleLeuValThrThrValGluAspHisValArgLeuIl 204223 : ATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCGACTTAT : 204279 243 : uArgSerIleIleIle : 247 !|||! !! !:!!||| eArgPheAsnValIle 204280 : TAGGTTTAACGTTATC : 204296 vulgar: CbirOr62PN 87 247 . KQ414617.1 203816 204296 + 355 M 160 480 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203817 204296 355 + . gene_id 1 ; sequence CbirOr62PN ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203817 204296 . + . KQ414617.1 exonerate:protein2genome:local exon 203817 204296 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203817 204296 355 + . alignment_id 1 ; Query CbirOr62PN ; Align 203817 88 480 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr62PN Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 312 -> 369 Target range: 204763 -> 204934 313 : LeuValIleGlnCysAspGlyIleTyrGluAlaValTyrGlnTyrGluTrpTyrLysL : 332 ||| !|||:!!! !!!:! !:!!|||! |||!.!|||:!!! !||||||! !!.| LeuSerIleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnL 204764 : ttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATT : 204821 333 : euLysProTrpGlnAlaLysAspPheLeuAsnIleMetIleGlnSerArgArgProLe : 351 ||||| !! :!!||||||..!!!.:!! |||||| !::!:!!!:!|||||||| euLysSerAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLe 204822 : TGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCT : 204878 352 : uHisLeuThrAlaGlyArgLeuPheProMetThrIleAlaThrLeuCysAsnLeu : 369 | !||||||||||||:::|||||||||||||||!!: !|||!!!||||||:!! uCysLeuThrAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsnVal 204879 : CTGTTTAACCGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: CbirOr62PN 312 369 . KQ414617.1 204763 204934 + 146 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204764 204934 146 + . gene_id 2 ; sequence CbirOr62PN ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204764 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204764 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204764 204934 146 + . alignment_id 2 ; Query CbirOr62PN ; Align 204764 313 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr85PNC Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 390 Query range: 89 -> 281 Target range: 203813 -> 204484 90 : ValLeuIleProIleLeuLysMetValLysThrAspTrpLeuLysLeuLysThrGluG : 109 ||||||:!:|||:!!:!!!!.|||:!! ! !|||||| !||||||||||||!!: ValLeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspP 203814 : GTTCTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATT : 203871 110 : luGluArgValValMetIleLysGlnGlyGlnThrAlaArgAlaIleMetIleTrpAs : 128 ||||||! !|||||||||:!!!:! !!:!! !.!!||||||! !! ||| !.. heGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSe 203872 : TCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAG : 203928 129 : pAlaPheValMetValPheSerPheIleLeuValValIleLeuProCysPheGlyIle : 147 ! ! :!!!!: !! !:!! ! !!:!!!:!!:!!:!!|||||| ! !|||||| rTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIle 203929 : TTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATT : 203985 148 : SerIleArgTyrLeuThrAsnIleThrAspProArgArgValMetProLeuGlnThrT : 167 !!!! !||||||:!!|||||| !|||:!! !!:!!:!:!!.!.|||:!!! |||| ThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrT 203986 : ACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaactt : 204045 168 : yrTyrValLeuTyrAspValSerAspSerProPheTyrGluValThrPheLeuLeuGl : 186 |||||::: ||||||:::|||!!:!!!|||!:!!:!|||:!!! !||||||||||| yrTyrIle---TyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGl 204046 : attatatt---tacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCA : 204099 187 : nSerPheGlyValIleAlaAlaAlaThrIleTyrThrAlaThrAspThrPheMetSer : 205 |! ! ! !:!!:!: ! !||| ! !|||! !!.!..!|||!.!|||.!..!! nMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGly 204100 : AATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGA : 204156 206 : LeuLeuValPheHisIleCysGlyGlnLeuGluAsnLeuLysThrPheIleLeuAspL : 225 :!!|||:!!.!!|||||||||||||||||||||||||||:::||| :!! !:!!: IleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnI 204157 : ATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACA : 204216 226 : euAspLysPheSerAsnPheThrValAlaLeuSerSerSerValGlnAspHisIleAr : 244 !! ! ! !!...!!.!||| ! ! !||| !!!!!!!|||:!!||||||:!:|| leLysHisLeuGluThrPheAspArgIleLeuValThrThrValGluAspHisValAr 204217 : TAAAACATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCG : 204273 245 : gLeuIle{Ar} >>>> Target Intron 1 >>>> {g}PheIleLysIleVal : 252 |||||||{||} 98 bp {|} :!! ! :!::!! gLeuIle{Ar}++ ++{g}AlaValAspValIle 204274 : ACTTATT{AG}gt.........................ag{A}GCGGTCGATGTGATC : 204395 253 : AspAsnThrPheThrLeuMetLeuLeuGlyLeuLeuIleTyrPheGlyIleLeuPheI : 272 !!:!:!! !||||||:!!:!::!!|||!.!||||||.!!|||||||||! !!!! ! GluSerIlePheThrMetLeuValLeuAlaLeuLeuPheTyrPheGlyThrPheAlaC 204396 : GAAAGTATATTTACGATGTTAGTCCTCGCGCTGTTATTCTATTTCGGCACATTTGCTT : 204455 273 : leLeuTyrGlyPheLeuSerIleThrIle : 281 !:!!||||||.!.|||! !!!:|||:!! ysIleTyrGlyLeuLeuLeuMetThrVal 204456 : GCATTTATGGACTATTATTAATGACCGTA : 204484 vulgar: CbirOr85PNC 89 281 . KQ414617.1 203813 204484 + 390 M 80 240 G 1 0 M 76 228 S 0 2 5 0 2 I 0 94 3 0 2 S 1 1 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203814 204484 390 + . gene_id 1 ; sequence CbirOr85PNC ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203814 204283 . + . KQ414617.1 exonerate:protein2genome:local exon 203814 204283 . + . insertions 0 ; deletions 1 KQ414617.1 exonerate:protein2genome:local splice5 204284 204285 . + . intron_id 1 ; splice_site "GT" KQ414617.1 exonerate:protein2genome:local intron 204284 204381 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 204380 204381 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 204382 204484 . + . KQ414617.1 exonerate:protein2genome:local exon 204382 204484 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203814 204484 390 + . alignment_id 1 ; Query CbirOr85PNC ; Align 203814 90 240 ; Align 204054 171 228 ; Align 204383 248 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr85PNC Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 318 -> 372 Target range: 204769 -> 204931 319 : IleGlnTyrAspGlyIleTyrGluAlaValCysGlnTyrGluTrpTyrLysLeuGluP : 338 |||:!!! !!!:! !:!!|||! |||!.!! !:!!! !||||||! !!.|||:!! IleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysS 204770 : ATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAAT : 204827 339 : roArgGlnAlaLysAspLeuLeuAsnIleMetMetLeuThrArgArgProLeuHisLe : 357 !!!.!:!!||||||..!|||:!! |||||| !.!!!:!||||||||| !|| erAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLe 204828 : CGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTT : 204884 358 : uThrAlaGlyLysLeuPheProMetThrIleAlaThrLeuCysAsn : 372 ||||||||||||||||||||||||||||!!: !|||!!!|||||| uThrAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsn 204885 : AACCGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAAC : 204931 vulgar: CbirOr85PNC 318 372 . KQ414617.1 204769 204931 + 136 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204770 204931 136 + . gene_id 2 ; sequence CbirOr85PNC ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204770 204931 . + . KQ414617.1 exonerate:protein2genome:local exon 204770 204931 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204770 204931 136 + . alignment_id 2 ; Query CbirOr85PNC ; Align 204770 319 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr57NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 657 Query range: 0 -> 373 Target range: 203453 -> 204934 1 : LeuGluTrpAlaIleGlyIleAsnArgPheThrLeuLysIleLeuGlyLeuTrpProA : 20 !!!|||||||||:!! !!!!:||||||! !!:!|||!:!|||:!!||||||||| !! PheGluTrpAlaValArgMetAsnArgSerSerLeuArgIleIleGlyLeuTrpPheG 203454 : TTCGAATGGGCAGTTCGGATGAATCGCTCTAGTTTGAGAATAATTGGTCTTTGGTTTG : 203511 21 : spGluArgLeuAsnArgGlnGlnArgPheLeuAlaAsnLeuArgAlaPheIleIlePh : 39 !:||| !! ! ! ...:::|||||| ...|||||| !.!. ||| ! luGluAspHisAlaGlyThrMetLysPheLeuArgLysLeuArgAsnMetGlyIleVa 203512 : AAGAAGATCACGCTggaacgatgaaatttttaagaaaattacgcAATATGGGGATCGT : 203568 40 : eThrThrMetIleLeuValSerValIleProAlaTyrIleSerLeuMetArgValTrp : 58 !! !!!::!!!!!|||!!!|||:!!|||..! ! !||||||!!:!:! !!! lLeuIleIleLeuPheValCysValLeuProCysLeuTyrSerLeuIleLysGlnCys 203569 : GCTGATAATCCTCTTCGTTTGTGTACTTCCTTGCCTCTACTCTTTGATCAAACAATGT : 203625 59 : GlyAspMetMetAlaIleIleAspAsnLeuGlnValThrLeuProCysSerIleAlaA : 78 ! !..!:!:||||||:!:||||||||||||..! !|||:!!|||! !!!|||.!! AspSerLeuMetAlaValIleAspAsnLeuSerTyrThrIleProLeuThrIleThrL 203626 : GACAGTTTAATGGCGGTGATAGATAATCTTTCATATACTATTCCTTTGACAATAACAC : 203685 79 : laLeuLysIleIleIleMetTrpSerArgLysGlu{A} >>>> Target Intron : 90 !:!!||| !|||:!!!!:! !|||!:!||||||{!} 93 bp euMetLysTyrIleValIleLeuSerLysLysGlu{V}++ 203686 : TGATGAAGTATATCGTTATATTGAGTAAAAaggaa{g}gt.................. : 203724 91 : 1 >>>> {sp}LeuThrProIleValAsnMetValValAlaAspTrpIleArgThr : 105 { !}||| !|||:!!|||||||||:!!!.!! !|||||| !!:! ! ++{al}LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeu 203725 : .......ag{TT}CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTG : 203859 106 : LysThrGluGluGluArgAspThrMetIleArgGlnAlaArgIleAlaArgTrpIleV : 125 ||||||!!: |||||||||..!||||||!:!!:!.!!||||||.!!||| ! ! LysThrAspPheGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrS 203860 : AAAACGGATTTCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCA : 203919 126 : alValPheGlyCysIleIleMetIleLeuGluIleIleIleIleValIleProProCy : 144 !:!!.!..!!! ! :!!!!:.!! !! !:!!!!:.!!!!::!!:!!! !||| ! erIleLeuSerTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProAr 203920 : GTATACTGAGTTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAG : 203976 145 : sPheGlyTyrSerMetArgTyrLeuThrAsnIleThrAspLysProGlyLysProLeu : 163 !||| !!!!! ||||||:!!|||||| !|||:!!! ! ! |||! !!!! gThrGlyIleThrThrArgTyrValThrAsnGluThrAsnIleLys---LysLeuPhe 203977 : AACCGGTATTACCACTAGATACGTAACAAACGAAACCAACATAAAA---AAGCTTTTT : 204030 164 : LeuLeuGlnThrTyrTyrLeuArgAspThrThrGluSerProTyrPheGluIleValP : 183 ! !:!!! |||||||||::: ||| :!!|||!!!|||||||||||||||:!!| ProValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetP 204031 : CCGGTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTGAGATAATGT : 204090 184 : heValAlaGlnAlaIleAlaValValMetCysAlaPheSerTyrThrAlaThrAspAs : 202 ||:!! !||| ! !.!!:!!|||:!: |||.!!!!!|||! !!.!..!||||| heLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAs 204091 : TTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAA : 204147 203 : nPheMetGlyIleValIlePheHisIleCysAlaGlnMetGluIleLeuLysAlaArg : 221 ||||.!.||||||:!!|||.!!|||||||||!.!|||:!!|||! !|||:::.!!||| nPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArg 204148 : TTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGA : 204204 222 : LeuLeuAsnLeuGlnGlyPheLysAspPheAsnValGlyLeuSerThrAsnValGlnA : 241 ||| !|||:!!:!! !!!.:!! !|||:!! ! !||| !|||!..|||:!!| LeuAlaAsnIleLysHisLeuGluThrPheAspArgIleLeuValThrThrValGluA 204205 : CTTGCAAACATAAAACATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAG : 204264 242 : spHisLeuArgLeuIle{Ar} >>>> Target Intron 2 >>>> {g}SerVa : 249 |||||:!!|||||||||{||} 98 bp {|}:!!|| spHisValArgLeuIle{Ar}++ ++{g}AlaVa 204265 : ATCATGTGCGACTTATT{AG}gt.........................ag{A}GCGGT : 204386 250 : lAspValIleGluAsnThrPheAsnLeuMetLeuLeuAlaLeuLeuValTyrPheThr : 268 |||||||||||||!:!! !|||!..:!!:!::!!|||||||||||| !!|||||| ! lAspValIleGluSerIlePheThrMetLeuValLeuAlaLeuLeuPheTyrPheGly 204387 : CGATGTGATCGAAAGTATATTTACGATGTTAGTCCTCGCGCTGTTATTCTATTTCGGC : 204443 269 : IleLeuPheCysLeuGlnGlyPheLeuIleIleSerIleIleAsp<->GluGlyGlyA : 287 ! !!!! !|||:!! ! |||.!.|||:!!!!:!!!:!!! ! ! ||| !: ThrPheAlaCysIleTyrGlyLeuLeuLeuMetThrValSerLysIleThrGlyLeuS 204444 : ACATTTGCTTGCATTTATGGACTATTATTAATGACCGTAAGTAAAATCACCGGTTTAT : 204503 288 : snValSerPheProArgIleCysTrpLeuValSerValLeuIleAsnThrPheValHi : 306 :! !! !.!. !!.! !||| ! !:!!:!! !! !.!!::::!!! :!!|| erLysLeuIleAsnAsnSerCysGluThrIleAlaArgGlnPheSerSerSerIleHi 204504 : CCAAATTGATAAATAACTCCTGTGAGACGATCGCGAGGCAATTTTCATCGTCGATTCA : 204560 307 : sMetCysLeuTyrCysVal{V} >>>> Target Intron 3 >>>> {al}Gly : 314 |:!! !:!!||| !!{:} 171 bp {!!}... sLeuHisMetTyrLeuPhe{I}-+ +-{le}Ser 204561 : TCTGCATATGTATCTATTT{A}at.........................at{tt}tca : 204755 315 : GluThrLeuIleAlaLysCysGluGlyIleTyrTyrAlaValTyrAspTyrAlaTrpT : 334 :::||| !|||! !|||! !:!!||| !|||!.!|||!!:! !! !|||! IleSerLeuSerIleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpL 204756 : atttctttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGT : 204815 335 : yrLeuLeuLysProLysGluAlaArgSerLeuMetLeuIleMetIleArgAlaAspLy : 353 !|||||| !!!!.:!!|||!:!||||||!!:||||||||| !||||||.!.!: euAsnLeuLysSerAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnAr 204816 : TGAATTTGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAG : 204872 354 : sProLeuTyrIleThrAlaGlyArgIlePheProMetThrLeuSerMetPheCysSer : 372 !||||||! !:!!|||||||||::::::||||||||||||:!! !! !||||||!:! gProLeuCysLeuThrAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsn 204873 : GCCGCTCTGTTTAACCGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAAC : 204929 373 : Ile : 373 :!! Val 204930 : GTC : 204934 vulgar: CbirOr57NTE 0 373 . KQ414617.1 203453 204934 + 657 M 89 267 S 0 1 5 0 2 I 0 89 3 0 2 S 1 2 M 69 207 G 1 0 M 86 258 S 0 2 5 0 2 I 0 94 3 0 2 S 1 1 M 36 108 G 0 3 M 29 87 S 0 1 5 0 2 I 0 167 3 0 2 S 1 2 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203454 204934 657 + . gene_id 1 ; sequence CbirOr57NTE ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203454 203721 . + . KQ414617.1 exonerate:protein2genome:local exon 203454 203721 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 203722 203723 . + . intron_id 1 ; splice_site "gt" KQ414617.1 exonerate:protein2genome:local intron 203722 203814 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 203813 203814 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 203815 204283 . + . KQ414617.1 exonerate:protein2genome:local exon 203815 204283 . + . insertions 0 ; deletions 1 KQ414617.1 exonerate:protein2genome:local splice5 204284 204285 . + . intron_id 2 ; splice_site "GT" KQ414617.1 exonerate:protein2genome:local intron 204284 204381 . + . intron_id 2 KQ414617.1 exonerate:protein2genome:local splice3 204380 204381 . + . intron_id 1 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 204382 204581 . + . KQ414617.1 exonerate:protein2genome:local exon 204382 204581 . + . insertions 3 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 204582 204583 . + . intron_id 3 ; splice_site "AT" KQ414617.1 exonerate:protein2genome:local intron 204582 204752 . + . intron_id 3 KQ414617.1 exonerate:protein2genome:local splice3 204751 204752 . + . intron_id 2 ; splice_site "at" KQ414617.1 exonerate:protein2genome:local cds 204753 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204753 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203454 204934 657 + . alignment_id 1 ; Query CbirOr57NTE ; Align 203454 1 267 ; Align 203817 91 207 ; Align 204024 161 258 ; Align 204383 248 108 ; Align 204494 284 87 ; Align 204755 314 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr80PN Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 354 Query range: 0 -> 242 Target range: 203453 -> 204284 1 : PheGluTrpAlaValLysLeuAsnArgAlaGlyLeuAsnLeuLeuGlyLeuTrpProA : 20 |||||||||||||||::!:!!||||||:!!.!!|||!..:!!:!!||||||||| !. PheGluTrpAlaValArgMetAsnArgSerSerLeuArgIleIleGlyLeuTrpPheG 203454 : TTCGAATGGGCAGTTCGGATGAATCGCTCTAGTTTGAGAATAATTGGTCTTTGGTTTG : 203511 21 : snProLysGluAsnProArgGluLysLeuValAsnAsnIleArg<->ValPheLeuTh : 38 !. ! ! .!. ! |||...:::......:::||| :!! :!!.. luGluAspHisAlaGlyThrMetLysPheLeuArgLysLeuArgAsnMetGlyIleVa 203512 : AAGAAGATCACGCTggaacgatgaaatttttaagaaaattacgcAATATGGGGATCGT : 203568 39 : rPheLeuValLeuIleAsnLeuLeuValProSerIleHisLeuLeuIleLysIleHis : 57 !.!.:!!:!!|||.!! !! !:!!:!!|||!!!:!!:!!! !||||||||| ! ! lLeuIleIleLeuPheValCysValLeuProCysLeuTyrSerLeuIleLysGlnCys 203569 : GCTGATAATCCTCTTCGTTTGTGTACTTCCTTGCCTCTACTCTTTGATCAAACAATGT : 203625 58 : SerAspIleMetLeuThrIleAspAsnLeuGlnIleThrIleProIleLeuThrThrV : 77 ..!..!:!!||| !..!||||||||||||..! !|||||||||:!: !! !|||: AspSerLeuMetAlaValIleAspAsnLeuSerTyrThrIleProLeuThrIleThrL 203626 : GACAGTTTAATGGCGGTGATAGATAATCTTTCATATACTATTCCTTTGACAATAACAC : 203685 78 : alIleArgLeuProIlePheTrpTrpLysLysGlu{A} >>>> Target Intron : 89 !!!!:!:!! ! !:!!.!.! ! ! |||||||||{!} 93 bp euMetLysTyrIleValIleLeuSerLysLysGlu{V}++ 203686 : TGATGAAGTATATCGTTATATTGAGTAAAAaggaa{g}gt.................. : 203724 90 : 1 >>>> {la}PheThrSerIleValAsnMetIleMetGluAspTrpLeuLysThr : 104 {.!}.!! ! !!:!!|||||||||||| !||||||||| !||| ! ++{al}LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeu 203725 : .......ag{TT}CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTG : 203859 105 : LysAsnIleHisGluArgLysThrMetIleLysTrpAlaLeuArgAlaArgIleIleI : 124 |||!.. ! !|||||| ! ..!||||||:!! ! .!!! !! !.!!||| !! !! LysThrAspPheGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrS 203860 : AAAACGGATTTCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCA : 203919 125 : leThrIleThrTyrPheValIleAlaIleAlaLeuMetLeuPhePheValIleGlyPr : 143 !! !:!:!:!||| :!!||| !! !|||:!!|||!!!.!..!.|||:!! ! erIleLeuSerTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProAr 203920 : GTATACTGAGTTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAG : 203976 144 : oIle<->PheGlyLysSerMetThrSerAsnIleThrAspSerHisArgSerLeuThr : 161 !! ! .!! !! !!! ..!!!!||| !|||:!!! ! ! !:! !!!! !! gThrGlyIleThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPhePro 203977 : AACCGGTATTACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCG : 204033 162 : LeuProThrTyrTyrIleTyrAspValThrLysArgProGlnTyrGluLeuThrIleI : 181 :!!|||||||||||||||||||||::::!!:!!! !||| ! !:!|||:!!! !.!!: ValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheL 204034 : GTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTC : 204093 182 : leSerGlnCysIleSerLeuThrThrGlySerIleLeuTyrThrGlyIleAspAsnPh : 200 !! !||| !!!!|||..! ! !:!!:!!! !|||! !|||:!!|||||||| euLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPh 204094 : TCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTT : 204150 201 : ePheUnkLeuLeuValPheHisIleCysGlyGlnValAsnIleMetArgTyrHisPhe : 219 |||| :!!|||:!!.!!|||||||||||||||:!!.!.! !:!:||| !...!! ePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeu 204151 : CTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTT : 204207 220 : LysHis<->SerHis<->AspAsnPheArgValValLeuArgThrSerValMetTyrH : 237 !:!! !.!||| !!:!.!||| ! !:!!||| !|||!!!||| !!| AlaAsnIleLysHisLeuGluThrPheAspArgIleLeuValThrThrValGluAspH 204208 : GCAAACATAAAACATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATC : 204267 238 : isIleArgLeuLeuArg : 242 ||:!:||||||:!!||| isValArgLeuIleArg 204268 : ATGTGCGACTTATTAGG : 204284 vulgar: CbirOr80PN 0 242 . KQ414617.1 203453 204284 + 354 M 34 102 G 0 3 M 54 162 S 0 1 5 0 2 I 0 89 3 0 2 S 1 2 M 55 165 G 0 3 M 77 231 G 0 3 M 2 6 G 0 3 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203454 204284 354 + . gene_id 1 ; sequence CbirOr80PN ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203454 203721 . + . KQ414617.1 exonerate:protein2genome:local exon 203454 203721 . + . insertions 3 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 203722 203723 . + . intron_id 1 ; splice_site "gt" KQ414617.1 exonerate:protein2genome:local intron 203722 203814 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 203813 203814 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 203815 204284 . + . KQ414617.1 exonerate:protein2genome:local exon 203815 204284 . + . insertions 9 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203454 204284 354 + . alignment_id 1 ; Query CbirOr80PN ; Align 203454 1 102 ; Align 203559 35 162 ; Align 203817 90 165 ; Align 203985 145 231 ; Align 204219 222 6 ; Align 204228 224 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr80PN Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 312 -> 369 Target range: 204763 -> 204934 313 : LeuMetAlaGluCysAsnGlyIleTyrHisAlaValTyrGluCysGluTrpTyrSerL : 332 ||| ! !:!!! !.!.! !:!!||| !|||!.!|||||||||||||||! !:!| LeuSerIleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnL 204764 : ttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATT : 204821 333 : euAspProLysGluAlaLysAspLeuIleProPheMetIleLysValSerGluProVa : 351 || ! !!!!.:!!||||||..!|||||| !.!!||| !!:!!.!..!..!|||:! euLysSerAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLe 204822 : TGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCT : 204878 352 : lCysPheThrAlaGlyLysIlePheProIleThrMetThrThrLeuCysAsnLeu : 369 !|||!!.||||||||||||:::||||||:::|||||| !|||!!!||||||:!! uCysLeuThrAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsnVal 204879 : CTGTTTAACCGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: CbirOr80PN 312 369 . KQ414617.1 204763 204934 + 154 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204764 204934 154 + . gene_id 2 ; sequence CbirOr80PN ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204764 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204764 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204764 204934 154 + . alignment_id 2 ; Query CbirOr80PN ; Align 204764 313 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr74CTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 476 Query range: 14 -> 261 Target range: 203450 -> 204284 15 : AspPheGluTrpAlaValLysLeuAsnArgPheSerLeuLysLeuLeuGlyLeuTrpP : 34 ||||||||||||||||||::!:!!||||||! !||||||!:!:!!:!!||||||||| AspPheGluTrpAlaValArgMetAsnArgSerSerLeuArgIleIleGlyLeuTrpP 203451 : GACTTCGAATGGGCAGTTCGGATGAATCGCTCTAGTTTGAGAATAATTGGTCTTTGGT : 203508 35 : roMetThrGluAspAsnValProGluAsnIleMetTyrLysSerArgProLeuIleIl : 53 ! !!!: !! ! ......::: ||| ||| !:!! || heGluGluAspHisAlaGlyThrMetLysPheLeuArgLysLeuArgAsnMetGlyIl 203509 : TTGAAGAAGATCACGCTggaacgatgaaatttttaagaaaattacgcAATATGGGGAT : 203565 54 : eIleLeuIleLeuThrPheGlyPheLeuValProSerIleHisSerLeuIleArgIle : 72 |:!:||||||:!! !|||! !! !:!!:!!|||!!!:!!:!!|||||||||!:! ! eValLeuIleIleLeuPheValCysValLeuProCysLeuTyrSerLeuIleLysGln 203566 : CGTGCTGATAATCCTCTTCGTTTGTGTACTTCCTTGCCTCTACTCTTTGATCAAACAA : 203622 73 : ArgSerAsnIleMetLeuLeuIleAspAsnLeuGlnTyrThrLeuProThrIleThrC : 92 !!..!!:!:!!||| !:!!||||||||||||..!||||||:!!||| !! !! ! CysAspSerLeuMetAlaValIleAspAsnLeuSerTyrThrIleProLeuThrIleT 203623 : TGTGACAGTTTAATGGCGGTGATAGATAATCTTTCATATACTATTCCTTTGACAATAA : 203682 93 : ysAlaIleArgValValValPheTrpTrpLysLysGlu{A} >>>> Target Int : 105 !!!:!:! !:!!|||.!.! ! ! |||||||||{!} 93 bp hrLeuMetLysTyrIleValIleLeuSerLysLysGlu{V}++ 203683 : CACTGATGAAGTATATCGTTATATTGAGTAAAAaggaa{g}gt............... : 203724 106 : ron 1 >>>> {la}ValThrSerLeuLeuAsnMetValAlaGluAspTrpLeuLys : 119 {.!}:!! ! !!|||:!!||||||:!!|||||||||||| !||| ++{al}LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLys 203725 : ..........ag{TT}CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAG : 203856 120 : IleLysSerAlaGlnGluArgSerLysMetIleGlyLysAlaGlnThrAlaArgIleI : 139 :!:|||!!!! ! ||||||..! !|||||| !::!.!!!:!! !.!!||| !! LeuLysThrAspPheGluArgAspValMetIleGlnArgThrArgIleThrArgAlaT 203857 : TTGAAAACGGATTTCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAA : 203916 140 : leIleThrCysAlaTyrGlyAlaMetMetIleAlaPheIlePheThrGlyIleLeuPr : 158 !! !! ! ::!|||!.! !!!:.!.! !||| ! !!:|||! ! !:!!||||| hrSerIleLeuSerTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuPr 203917 : CCAGTATACTGAGTTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACC : 203973 159 : oIlePheGlyIleSerAlaArgTyrLeuThrAsnThrSerAspProAspLysLeuLeu : 177 |! ! !||||||!!!.!!||||||:!!|||||| !!!!:!! ! ! ||||||!!! oArgThrGlyIleThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPhe 203974 : AAGAACCGGTATTACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTT : 204030 178 : ProPheGlnThrTyrTyrLeuTyrAspValThrLysArgProGlnTyrGluPheThrP : 197 ||| ! ! |||||||||:::||||||::::!!:!!! !||| ! !:!|||.!.! !| ProValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetP 204031 : CCGGTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTGAGATAATGT : 204090 198 : heIleValGlnIleLeuCysMetValPheGlyValMetSerTyrThrGlyIleAspAs : 216 ||:!!:!!|||!!: ! !:!:|||!!. !!.!:!:!!!|||! !|||:!!||||| heLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAs 204091 : TTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAA : 204147 217 : nLeuLeuGlyLeuLeuValPheHisIleSerGlyGlnPheAspIleLeuArgAsnArg : 235 |!!!!!!|||:!!|||:!!.!!||||||!!!||||||!!.!!:! !||||||!..||| nPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArg 204148 : TTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGA : 204204 236 : IleMetHisMetAsnAspTyrIleAspPheArgAspSerValArgSerSerValIleA : 255 :!! :!!!!:!!. !!! ! !||| ! !! !:!! !!!!!!!||| !| LeuAlaAsnIleLysHisLeuGluThrPheAspArgIleLeuValThrThrValGluA 204205 : CTTGCAAACATAAAACATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAG : 204264 256 : spHisThrArgLeuLeuArg : 261 |||||..!||||||:!!||| spHisValArgLeuIleArg 204265 : ATCATGTGCGACTTATTAGG : 204284 vulgar: CbirOr74CTE 14 261 . KQ414617.1 203450 204284 + 476 M 90 270 S 0 1 5 0 2 I 0 89 3 0 2 S 1 2 M 156 468 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203451 204284 476 + . gene_id 1 ; sequence CbirOr74CTE ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203451 203721 . + . KQ414617.1 exonerate:protein2genome:local exon 203451 203721 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 203722 203723 . + . intron_id 1 ; splice_site "gt" KQ414617.1 exonerate:protein2genome:local intron 203722 203814 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 203813 203814 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 203815 204284 . + . KQ414617.1 exonerate:protein2genome:local exon 203815 204284 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203451 204284 476 + . alignment_id 1 ; Query CbirOr74CTE ; Align 203451 15 270 ; Align 203817 106 468 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr74CTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 330 -> 386 Target range: 204763 -> 204931 331 : LeuValAlaGlnCysGluHisIleHisTyrThrValTyrAsnTyrLysTrpTyrThrL : 350 ||| ! !:!!! !|||.!.:!!:!! !.!!!.!|||.!.! !:!!|||! !.!| LeuSerIleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnL 204764 : ttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATT : 204821 351 : euAspProArgAsnValLysValLeuLeuPheLeuMetValArgSerSerLysProTh : 369 || ! !!!.!!!.!.!||| !|||:!!!!.:!!|||!.!|||:!!..!!:!||| euLysSerAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLe 204822 : TGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCT : 204878 370 : rTyrLeuThrAlaGlyLysIlePheProMetThrMetSerThrPheCysSer : 386 !! !|||||||||||||||:::||||||||||||||| !|||||||||!:! uCysLeuThrAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsn 204879 : CTGTTTAACCGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAAC : 204931 vulgar: CbirOr74CTE 330 386 . KQ414617.1 204763 204931 + 129 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204764 204931 129 + . gene_id 2 ; sequence CbirOr74CTE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204764 204931 . + . KQ414617.1 exonerate:protein2genome:local exon 204764 204931 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204764 204931 129 + . alignment_id 2 ; Query CbirOr74CTE ; Align 204764 331 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr67NC Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 432 Query range: 0 -> 245 Target range: 203453 -> 204281 1 : PheGluTrpAlaValLysLeuAsnArgIleSerLeuGluMetIleGlyLeuTrpProL : 20 |||||||||||||||::!:!!|||||| !||||||..!!!:|||||||||||| !: PheGluTrpAlaValArgMetAsnArgSerSerLeuArgIleIleGlyLeuTrpPheG 203454 : TTCGAATGGGCAGTTCGGATGAATCGCTCTAGTTTGAGAATAATTGGTCTTTGGTTTG : 203511 21 : ysProGluLysIleArgArgAspGluLeuLysArgAsnLeuTyrValPheValValLe : 39 !! !!!: ! ! :::... |||...||| !.!.! !:!!:! luGluAspHisAlaGlyThrMetLysPheLeuArgLysLeuArgAsnMetGlyIleVa 203512 : AAGAAGATCACGCTggaacgatgaaatttttaagaaaattacgcAATATGGGGATCGT : 203568 40 : uLeuMetLeuValIleValGlyLeuPheProCysThrLeuSerLeuLeuArgIleGln : 58 !|||!!::!!:!!.!!||| !!:!!.!!|||||| !! !||||||:!!!:! ! lLeuIleIleLeuPheValCysValLeuProCysLeuTyrSerLeuIleLysGlnCys 203569 : GCTGATAATCCTCTTCGTTTGTGTACTTCCTTGCCTCTACTCTTTGATCAAACAATGT : 203625 59 : GlnAsnPheThrLeuIleIleGluGlnLeuGlnPheLeuLeuProLeuValThrCysV : 78 .!.!:!!!.! ! !:!:|||!!:.!.|||..!!:! !:!!||||||..!! ! : AspSerLeuMetAlaValIleAspAsnLeuSerTyrThrIleProLeuThrIleThrL 203626 : GACAGTTTAATGGCGGTGATAGATAATCTTTCATATACTATTCCTTTGACAATAACAC : 203685 79 : alIleArgLeuValIlePheTrpTrpLysLysGlu{A} >>>> Target Intron : 90 !!!!:!:!! !:!!:!!.!.! ! ! |||||||||{!} 93 bp euMetLysTyrIleValIleLeuSerLysLysGlu{V}++ 203686 : TGATGAAGTATATCGTTATATTGAGTAAAAaggaa{g}gt.................. : 203724 91 : 1 >>>> {la}ValIleSerIleMetAsnMetIleValGluAspTrpLeuAsnSer : 105 {.!}:!!:!: !!:!!:!:|||||||||!.!||||||||| !!!.! ! ++{al}LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeu 203725 : .......ag{TT}CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTG : 203859 106 : LysAsnIleGlnGluLysAsnIleMetIleThrTrpAlaGlnLysProArgLysIleI : 125 |||!.. ! |||!:!:!!:!:|||||| ! ! .!!!:!! !!||| !! !! LysThrAspPheGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrS 203860 : AAAACGGATTTCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCA : 203919 126 : leMetIleAlaTyrSerIleMetGlyIleSerTyrAlaCysValValValLeuProAl : 144 !!!::!:::!|||:!!:!!!!: !! !:!! !! !:!!:!!||||||||| erIleLeuSerTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProAr 203920 : GTATACTGAGTTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAG : 203976 145 : aLeuGlyIleSerValThrTyrThrArgAsnAlaThrAspIleAsnLysIleLeuPro : 163 ! !||||||!!!..!! !|||..!! !|||! !|||:!!|||!!.|||:!!!!!||| gThrGlyIleThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPhePro 203977 : AACCGGTATTACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCG : 204033 164 : LeuGlnGlyPhePheIleTyrAspAlaThrLysThrProLeuTyrIleLeuThrTyrI : 183 :!!! ::::::||||||||| :!!:!!||||||! !!:! :!!! !!:!: ValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheL 204034 : GTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTC : 204093 184 : leAlaGlnValIleThrPhePhePheAlaValMetAlaTyrThrGlyIleAspAsnPh : 202 !! !|||:!! !|||!!. ! !!. !!.!:!:..!|||! !|||:!!|||||||| euLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPh 204094 : TCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTT : 204150 203 : eLeuGlyLeuLeuValPheHisIleCysGlyGlnMetGluIleLeuMetAlaArgPhe : 221 |!!!|||:!!|||:!!.!!|||||||||||||||:!!|||! !||| .!!|||.!! ePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeu 204151 : CTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTT : 204207 222 : SerCysLeuSerLysLeuThrLysPheArgAsnGlyLeuGluSerCysValArgAsnH : 241 :!! !:!!!.! ! ||| !! ||| !..! !|||! !!!! |||..!:!!| AlaAsnIleLysHisLeuGluThrPheAspArgIleLeuValThrThrValGluAspH 204208 : GCAAACATAAAACATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATC : 204267 242 : isIleArgLeuLeu : 245 ||:!:||||||:!! isValArgLeuIle 204268 : ATGTGCGACTTATT : 204281 vulgar: CbirOr67NC 0 245 . KQ414617.1 203453 204281 + 432 M 89 267 S 0 1 5 0 2 I 0 89 3 0 2 S 1 2 M 155 465 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203454 204281 432 + . gene_id 1 ; sequence CbirOr67NC ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203454 203721 . + . KQ414617.1 exonerate:protein2genome:local exon 203454 203721 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 203722 203723 . + . intron_id 1 ; splice_site "gt" KQ414617.1 exonerate:protein2genome:local intron 203722 203814 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 203813 203814 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 203815 204281 . + . KQ414617.1 exonerate:protein2genome:local exon 203815 204281 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203454 204281 432 + . alignment_id 1 ; Query CbirOr67NC ; Align 203454 1 267 ; Align 203817 91 465 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr88NC Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 574 Query range: 1 -> 281 Target range: 203453 -> 204484 2 : PheGluTrpAlaIleLysLeuAsnArgLeuThrLeuSerMetValGlyIleTrpProA : 21 ||||||||||||:!!::!:!!||||||! !!:!|||!!!!!::!!|||:!!||| !. PheGluTrpAlaValArgMetAsnArgSerSerLeuArgIleIleGlyLeuTrpPheG 203454 : TTCGAATGGGCAGTTCGGATGAATCGCTCTAGTTTGAGAATAATTGGTCTTTGGTTTG : 203511 22 : snValHisGlyAspAsnCysAspAspTyrPheSerAspLeuArgThrMetPheSerLe : 40 !.! ! !! !! !... :::... ||||||!.!||| ! !:! luGluAspHisAlaGlyThrMetLysPheLeuArgLysLeuArgAsnMetGlyIleVa 203512 : AAGAAGATCACGCTggaacgatgaaatttttaagaaaattacgcAATATGGGGATCGT : 203568 41 : uPheLeuPheValPheIleGlyMetIleProAlaIleHisSerLeuMetArgThrTrp : 59 !.!.:!!.!!:!!|||:!! !!:!::!!|||..!:!!:!!||||||!!:!:! !!! lLeuIleIleLeuPheValCysValLeuProCysLeuTyrSerLeuIleLysGlnCys 203569 : GCTGATAATCCTCTTCGTTTGTGTACTTCCTTGCCTCTACTCTTTGATCAAACAATGT : 203625 60 : GlyAspMetIleAlaThrIleAspAsnLeuGlnPheSerLeuProLeuLeuThrThrI : 79 ! !..!:!:!!:|||..!||||||||||||..!!:!!!!:!!|||||| !! !|||: AspSerLeuMetAlaValIleAspAsnLeuSerTyrThrIleProLeuThrIleThrL 203626 : GACAGTTTAATGGCGGTGATAGATAATCTTTCATATACTATTCCTTTGACAATAACAC : 203685 80 : leIleLysLeuValIleLeuArgTrpLysLysLeu{A} >>>> Target Intron : 91 !:!!:|||! !:!!:!!:!! ! ! |||||| {!} 93 bp euMetLysTyrIleValIleLeuSerLysLysGlu{V}++ 203686 : TGATGAAGTATATCGTTATATTGAGTAAAAaggaa{g}gt.................. : 203724 92 : 1 >>>> {sp}LeuThrSerValLeuAsnMetIleAlaAspAspTrpLeuLysAsp : 106 { !}||| ! !!:!!:!!||||||||||||!!:|||||| !||| ++{al}LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeu 203725 : .......ag{TT}CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTG : 203859 107 : LysThrAspArgGluLeuHisValMetLysAsnHisAlaArgAsnAlaArgAlaIleT : 126 ||||||||| !||| ! !!||||||! !.!.!...!!|||! !.!!||||||! !! LysThrAspPheGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrS 203860 : AAAACGGATTTCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCA : 203919 127 : hrIlePheGlyCysValPheMetThrValGlyPheSerLeuLeuValPheLeuProCy : 145 :!|||.!..!!! !!.!!!.!!: !..!!.! ! ! !!!!:!!:!! !!|||||| ! erIleLeuSerTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProAr 203920 : GTATACTGAGTTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAG : 203976 146 : sPheGlyMetSerLeuArgTyrValThrAsnIleThrAspProGlnLysIleLeuPro : 164 !|||!!:!!! !||||||||||||||| !|||:!! !:!!|||:!!!!!||| gThrGlyIleThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPhePro 203977 : AACCGGTATTACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCG : 204033 165 : LeuGlnThrTyrTyrPheTyrAspLysAspGlnSerProTyrPheGluLeuThrTyrV : 184 :!!! |||||||||...|||||| ..!:!!!!!||||||||||||:!!! !!:!: ValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheL 204034 : GTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTC : 204093 185 : alAlaGlnGlyLeuLeuLeuValThrAlaGlyAlaSerTyrThrGlyIleAspAsnLe : 203 !! !||| ! ! !|||||| ! !!.! !!!!|||! !|||:!!||||||!! euLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPh 204094 : TCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTT : 204150 204 : uLeuGlyLeuLeuIlePheHisLeuCysGlyGlnMetGluAsnLeuLysAspLysLeu : 222 !!!!|||:!!||||||.!!|||:!!|||||||||:!!|||||||||::: ::!||| ePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeu 204151 : CTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTT : 204207 223 : ThrAsnMetArgGlnPheLysThrPheHisSerAsnLeuAlaLeuIleValArgAspH : 242 .!!|||!!:!:!!!.!!.:!!|||||| !! !!! !|||!.! !! |||..!|||| AlaAsnIleLysHisLeuGluThrPheAspArgIleLeuValThrThrValGluAspH 204208 : GCAAACATAAAACATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATC : 204267 243 : isIleArgLeuIle{Ly} >>>> Target Intron 2 >>>> {s}TyrPheAs : 250 ||:!:|||||||||{!:} 98 bp {!} !!|| isValArgLeuIle{Ar}++ ++{g}AlaValAs 204268 : ATGTGCGACTTATT{AG}gt.........................ag{A}GCGGTCGA : 204389 251 : pValValGluAsnThrPheThrLeuLeuLeuLeuGlyLeuLeuLeuTyrPheGlyThr : 269 ||||:!!|||!:!! !||||||:!!|||:!!|||!.!||||||!!!|||||||||||| pValIleGluSerIlePheThrMetLeuValLeuAlaLeuLeuPheTyrPheGlyThr 204390 : TGTGATCGAAAGTATATTTACGATGTTAGTCCTCGCGCTGTTATTCTATTTCGGCACA : 204446 270 : LeuPheCysLeuTyrGlyPheLeuIleIleAlaVal : 281 !!! !|||:!!||||||.!.|||:!!!!:.!!||| PheAlaCysIleTyrGlyLeuLeuLeuMetThrVal 204447 : TTTGCTTGCATTTATGGACTATTATTAATGACCGTA : 204484 vulgar: CbirOr88NC 1 281 . KQ414617.1 203453 204484 + 574 M 89 267 S 0 1 5 0 2 I 0 89 3 0 2 S 1 2 M 155 465 S 0 2 5 0 2 I 0 94 3 0 2 S 1 1 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203454 204484 574 + . gene_id 1 ; sequence CbirOr88NC ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203454 203721 . + . KQ414617.1 exonerate:protein2genome:local exon 203454 203721 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 203722 203723 . + . intron_id 1 ; splice_site "gt" KQ414617.1 exonerate:protein2genome:local intron 203722 203814 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 203813 203814 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 203815 204283 . + . KQ414617.1 exonerate:protein2genome:local exon 203815 204283 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 204284 204285 . + . intron_id 2 ; splice_site "GT" KQ414617.1 exonerate:protein2genome:local intron 204284 204381 . + . intron_id 2 KQ414617.1 exonerate:protein2genome:local splice3 204380 204381 . + . intron_id 1 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 204382 204484 . + . KQ414617.1 exonerate:protein2genome:local exon 204382 204484 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203454 204484 574 + . alignment_id 1 ; Query CbirOr88NC ; Align 203454 2 267 ; Align 203817 92 465 ; Align 204383 248 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr88NC Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 316 -> 372 Target range: 204763 -> 204931 317 : LeuValThrGlnCysAspGlyIleTyrHisAlaAlaTyrGluTyrGluTrpTyrMetL : 336 ||| !! !:!!! !!!:! !:!!||| !||||||||||||! !||||||! ! | LeuSerIleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnL 204764 : ttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATT : 204821 337 : euArgProGluGluAlaLysThrLeuIleIleIleMetIleArgAlaSerLysProLe : 355 ||!:! !!.!.:!!||||||!:!||||||:!!|||||| !||||||..!!:!||||| euLysSerAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLe 204822 : TGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCT : 204878 356 : uTyrIleThrAlaGlyArgMetPheProMetThrMetSerMetPheCysAsn : 372 |! !:!!|||||||||::::::||||||||||||||| !! !||||||||| uCysLeuThrAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsn 204879 : CTGTTTAACCGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAAC : 204931 vulgar: CbirOr88NC 316 372 . KQ414617.1 204763 204931 + 160 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204764 204931 160 + . gene_id 2 ; sequence CbirOr88NC ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204764 204931 . + . KQ414617.1 exonerate:protein2genome:local exon 204764 204931 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204764 204931 160 + . alignment_id 2 ; Query CbirOr88NC ; Align 204764 317 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr58NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 505 Query range: 0 -> 246 Target range: 203453 -> 204284 1 : LeuGluTrpAlaIleGlyIleAsnArgIleSerLeuLysIleIleGlyLeuTrpProA : 20 !!!|||||||||:!! !!!!:|||||| !||||||!:!||||||||||||||| !! PheGluTrpAlaValArgMetAsnArgSerSerLeuArgIleIleGlyLeuTrpPheG 203454 : TTCGAATGGGCAGTTCGGATGAATCGCTCTAGTTTGAGAATAATTGGTCTTTGGTTTG : 203511 21 : spAspLysLeuAsnArgTrpGlnArgPheLeuAlaAspLeuArgAlaPheThrIlePh : 39 !:!!: ! ! ! ! ...:::|||||| |||||| !.!. !||| ! luGluAspHisAlaGlyThrMetLysPheLeuArgLysLeuArgAsnMetGlyIleVa 203512 : AAGAAGATCACGCTggaacgatgaaatttttaagaaaattacgcAATATGGGGATCGT : 203568 40 : eIleThrMetIleLeuAlaSerIleLeuProGlyIlePheAlaLeuValArgValTrp : 58 :!:! !!!::!!!!!!.!!!!:!!|||||| !!:!!!:!:!!|||:!!!:! !!! lLeuIleIleLeuPheValCysValLeuProCysLeuTyrSerLeuIleLysGlnCys 203569 : GCTGATAATCCTCTTCGTTTGTGTACTTCCTTGCCTCTACTCTTTGATCAAACAATGT : 203625 59 : GlyAspMetMetAlaMetThrAspAsnLeuGlnIleGlyLeuProPheSerValThrA : 78 ! !..!:!:||||||:!!! !|||||||||..! ! !:!!|||!!.!!!:!!||| AspSerLeuMetAlaValIleAspAsnLeuSerTyrThrIleProLeuThrIleThrL 203626 : GACAGTTTAATGGCGGTGATAGATAATCTTTCATATACTATTCCTTTGACAATAACAC : 203685 79 : laMetLysPheValIleMetTrpIleArgLysLys{G} >>>> Target Intron : 90 !||||||!:!:!!:!!!!:! !! !!:!|||:::{!} 93 bp euMetLysTyrIleValIleLeuSerLysLysGlu{V}++ 203686 : TGATGAAGTATATCGTTATATTGAGTAAAAaggaa{g}gt.................. : 203724 91 : 1 >>>> {lu}LeuMetProLeuIleAsnMetIleValGluAspTrpIleLysVal : 105 { }|||:!!||||||:!!|||||||||!.!||||||||| !|||:!! ++{al}LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeu 203725 : .......ag{TT}CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTG : 203859 106 : LysThrGluGlnGluArgGluIleMetIleLysGlnAlaLysThrAlaArgMetIleV : 125 ||||||!!: ||||||!!::!:||||||:!!!:!.!!::!! !.!!||| ! ! LysThrAspPheGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrS 203860 : AAAACGGATTTCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCA : 203919 126 : alMetPheGlyGlyIleMetMetThrLeuAlaSerIleIleLeuIleIleProProCy : 144 !!!:.!..!! ! :!:!!: ! !||| !!!:.!!:!!|||:!!! !||| ! erIleLeuSerTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProAr 203920 : GTATACTGAGTTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAG : 203976 145 : sPheGlyTyrSerMetArgTyrLeuThrAsnLeuThrAspSerGlyLysProLeuLeu : 163 !||| !!!!! ||||||:!!|||||| !|||:!!! ! !|||! !!!!! ! gThrGlyIleThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPhePro 203977 : AACCGGTATTACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCG : 204033 164 : LeuGlnThrTyrTyrLeuArgAspMetThrGluSerProTyrPheGluIleAlaPheI : 183 :!!! |||||||||::: |||::::!!|||!!!||||||||||||||| !|||: ValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheL 204034 : GTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTC : 204093 184 : leAlaGlnAlaThrSerIleIleValAlaAlaIleSerTyrThrGlyIleAspAsnPh : 202 !! !||| !.!!!!!:!!:!::!! !|||:!!!!!|||! !|||:!!|||||||| euLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPh 204094 : TCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTT : 204150 203 : eLeuSerValValIlePheHisIleCysAlaGlnLeuAspIleLeuLysGlyArgLeu : 221 |!!!.!!:!!:!!|||.!!|||||||||!.!||||||!!:! !|||::: !|||||| ePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeu 204151 : CTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTT : 204207 222 : LeuAsnLeuAsnThrPheLysAspPheAsnSerGlyLeuSerPheAsnIleGlnAspH : 241 !|||:!!!!. !!!.:!! !|||:!! !! !||| ! !!..:!!:!!|||| AlaAsnIleLysHisLeuGluThrPheAspArgIleLeuValThrThrValGluAspH 204208 : GCAAACATAAAACATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATC : 204267 242 : isLeuArgLeuIleArg : 246 ||:!!|||||||||||| isValArgLeuIleArg 204268 : ATGTGCGACTTATTAGG : 204284 vulgar: CbirOr58NTE 0 246 . KQ414617.1 203453 204284 + 505 M 89 267 S 0 1 5 0 2 I 0 89 3 0 2 S 1 2 M 156 468 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203454 204284 505 + . gene_id 1 ; sequence CbirOr58NTE ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203454 203721 . + . KQ414617.1 exonerate:protein2genome:local exon 203454 203721 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 203722 203723 . + . intron_id 1 ; splice_site "gt" KQ414617.1 exonerate:protein2genome:local intron 203722 203814 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 203813 203814 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 203815 204284 . + . KQ414617.1 exonerate:protein2genome:local exon 203815 204284 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203454 204284 505 + . alignment_id 1 ; Query CbirOr58NTE ; Align 203454 1 267 ; Align 203817 91 468 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr58NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 314 -> 371 Target range: 204763 -> 204934 315 : LeuIleAlaLysAlaGluGlyValTyrTyrAlaThrTyrGluTyrAlaTrpTyrSerL : 334 ||| !|||:!!|||! !|||||| !|||.!!||||||! !! !|||! !:!| LeuSerIleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnL 204764 : ttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATT : 204821 335 : euLysProAsnGlnAlaLysAspLeuMetLeuIleMetIleArgAlaGluLysProLe : 353 ||||| !!|||:!!||||||..!|||!!:||||||||| !||||||:!!!:!||||| euLysSerAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLe 204822 : TGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCT : 204878 354 : uTyrIleThrAlaGlyArgIlePheProMetThrLeuSerMetPheCysSerLeu : 371 |! !:!!|||||||||::::::||||||||||||:!! !! !||||||!:!:!! uCysLeuThrAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsnVal 204879 : CTGTTTAACCGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: CbirOr58NTE 314 371 . KQ414617.1 204763 204934 + 167 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204764 204934 167 + . gene_id 2 ; sequence CbirOr58NTE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204764 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204764 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204764 204934 167 + . alignment_id 2 ; Query CbirOr58NTE ; Align 204764 315 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr64NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 353 Query range: 91 -> 251 Target range: 203816 -> 204296 92 : IleLeuProValLeuAsnMetIleLysAspAspTrpLeuArgProGlnThrSerLysG : 111 :!!||||||:!!:!!||||||||| !!!:|||||| !!:! !:!!|||..! | LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspPheG 203817 : CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATTTCG : 203874 112 : luLysAsnIleMetIleLysGlnAlaArgIleAlaArgThrLeuThrIlePheSerPh : 130 ||!:!:!!:!:||||||:!!!:!.!!||||||.!!|||.!! !!:!|||.!.|||!: luArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSerTy 203875 : AAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAGTTA : 203931 131 : ePheValThrLeuMetSerGlyIleIleValSerPheLeuProLeuPheGlyIleSer : 149 ! :!!! !!!!! :!!! !!!:.!!:!!! ! !!|||||| ! !||||||!!! rAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIleThr 203932 : TGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATTACC : 203988 150 : LeuArgTyrArgThrAsnArgThrAspProGlyArgLeuLeuProLeuGlnThrTyrT : 169 !|||||| !||||||..!|||:!! ! !!:!|||!!!|||:!!! ||||||| ThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrTyrT 203989 : ACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttatt : 204048 170 : yrLeuTyrAsnValAsnSerSerProLeuTyrGluValThrPheLeuLeuGlnGlyPh : 188 ||:::|||::::::::!..!!!!|||! !!:!|||:!!! !|||||||||||| ! yrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAl 204049 : atatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGC : 204105 189 : eSerValMetAlaPheAlaThrMetTyrSerSerMetAspThrPheMetSerValLeu : 207 !!!!:!!:!! !.!.||| ! |||! !.!!:!:|||!.!|||.!..!!:!!||| aThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeu 204106 : CACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTG : 204162 208 : ValPheHisIleCysGlyGlnLeuGluAsnLeuLysThrArgIleArgAsnPheAspL : 227 :!!.!!|||||||||||||||||||||||||||:::||||||:!! !|||.!. ! IleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysH 204163 : ATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAAC : 204222 228 : ysPheAsnAsnPheAlaAsnThrLeuAlaThrSerValLysAspHisIleArgLeuAs : 246 ! !!..!.!.!|||! !..!! !|||!.!|||!!!|||:!!||||||:!:||||||! isLeuGluThrPheAspArgIleLeuValThrThrValGluAspHisValArgLeuIl 204223 : ATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCGACTTAT : 204279 247 : nArgAlaIleIleIle : 251 !||| !! !:!!||| eArgPheAsnValIle 204280 : TAGGTTTAACGTTATC : 204296 vulgar: CbirOr64NTE 91 251 . KQ414617.1 203816 204296 + 353 M 160 480 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203817 204296 353 + . gene_id 1 ; sequence CbirOr64NTE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203817 204296 . + . KQ414617.1 exonerate:protein2genome:local exon 203817 204296 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203817 204296 353 + . alignment_id 1 ; Query CbirOr64NTE ; Align 203817 92 480 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr64NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 316 -> 373 Target range: 204763 -> 204934 317 : LeuValMetArgCysAspGlyIleTyrAspAlaValCysGlnTyrGluTrpTyrArgL : 336 ||| !!!:!:!! !!!:! !:!!|||! !|||!.!! !:!!! !||||||! !.!| LeuSerIleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnL 204764 : ttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATT : 204821 337 : euLysProLysGlnMetLysAsnPheLeuAsnIleMetMetGlnSerArgArgProLe : 355 ||||| !!!!.:!! !|||!:!!!.:!! |||||| ::!:!!!:!|||||||| euLysSerAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLe 204822 : TGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCT : 204878 356 : uHisLeuThrAlaGlyLysLeuPheProMetThrValAlaThrLeuSerAsnLeu : 373 | !||||||||||||||||||||||||||||||:!! !|||!!!!!!|||:!! uCysLeuThrAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsnVal 204879 : CTGTTTAACCGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: CbirOr64NTE 316 373 . KQ414617.1 204763 204934 + 127 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204764 204934 127 + . gene_id 2 ; sequence CbirOr64NTE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204764 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204764 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204764 204934 127 + . alignment_id 2 ; Query CbirOr64NTE ; Align 204764 317 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr59PN Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 235 Query range: 2 -> 155 Target range: 203825 -> 204284 3 : IleIleLysMetIleValGluAspTrpLeuLysSerLysThrIleTyrGluLysAsnA : 22 :!!:!!!!.||||||!.!||||||||| !|||! !|||||| !!:!|||!:!:!!! LeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspPheGluArgAspV 203826 : CTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATTTCGAAAGAGACG : 203883 23 : laMetMetLysTrpAlaLeuArgAlaArgIleIleIleThrCysThrTyrLeuValIl : 41 .!|||!!::!! ! .!!! !! !.!!||| !! !! !! ! !:!||| !:!!|| alMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSerTyrAlaLeuIl 203884 : TGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAGTTATGCGTTAAT : 203940 42 : eValLeuAlaPheIleLeuLeuPheGlyMetProIleIleGlyLysSerMetAlaLeu : 60 | !! !||| ! !!:!!!:!!.!.! !:!:|||! !! !|||! !!!! !! ! ePheThrAlaValMetPheMetIleValLeuProArgThrGlyIleThrThrArgTyr 203941 : ATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATTACCACTAGATAC : 203997 61 : ThrProAsnIleThrAspSerGlyLysSerMetLeuMetProThrTyrTyrIleTyrA : 80 ..! !!||| !|||:!!! ! !||| !.!.! !:!!||||||||||||||||||| ValThrAsnGluThrAsnIleLysLysLeuPheProValProThrTyrTyrIleTyrA 203998 : GTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttattatatttacg : 204057 81 : spValThrLysLysProProProGlnTyrGluLeuThrIleIleSerGlnPheIleSe : 99 ||::::!!:!! !!||| ! !:!|||:!!! !.!!:!! !|||.!. !!! spIleSerGlu------ThrProTyrPheGluIleMetPheLeuLeuGlnMetAlaTh 204058 : atataTCTGAA------ACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGCCAC : 204108 100 : rLeuSerThrIleAlaIleLeuTyrIleGlyValAspAsnPhePheGlyLeuCysVal : 118 !||| ! !!!:|||:!!! !|||||||||||||||||||||||||||:!!! :!! rLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeuIle 204109 : CTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTGATC : 204165 119 : PheHisIleCysGlyGlnLeuAsnIleMetArgSerArgLeuLysHis<->SerHis< : 137 .!!||||||||||||||||||.!.! !:!:|||!!!|||||| !:!! !.!||| LeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysHisL 204166 : CTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAACATT : 204225 138 : ->GlyAsnPheArgThrValLeuLysAsnSerValIleTyrHisIleArgLeuLeuAr : 155 ! !!.!||| ! !:!!||| !!.!!!!||| ! !!|||:!:||||||:!!|| euGluThrPheAspArgIleLeuValThrThrValGluAspHisValArgLeuIleAr 204226 : TGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCGACTTATTAG : 204282 156 : g : 155 | g 204283 : G : 204284 vulgar: CbirOr59PN 2 155 . KQ414617.1 203825 204284 + 235 M 81 243 G 2 0 M 49 147 G 0 3 M 2 6 G 0 3 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203826 204284 235 + . gene_id 1 ; sequence CbirOr59PN ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203826 204284 . + . KQ414617.1 exonerate:protein2genome:local exon 203826 204284 . + . insertions 6 ; deletions 2 KQ414617.1 exonerate:protein2genome:local similarity 203826 204284 235 + . alignment_id 1 ; Query CbirOr59PN ; Align 203826 3 243 ; Align 204069 86 147 ; Align 204219 135 6 ; Align 204228 137 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr59PN Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 232 -> 282 Target range: 204784 -> 204934 233 : IleTyrTyrAlaValTyrAspPheGluTrpTyrTyrLeuAspProLysGluAlaLysA : 252 :!!||| !|||!.!|||!!:! !||||||! !!||| ! !!!!.:!!||||||. ValTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsnLysAlaLysS 204785 : GTATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAACAAGGCGAAAA : 204842 253 : spLeuIleProPheIleIleLysValSerGluProValTyrPheThrAlaGlyLysVa : 271 .!|||||| !.!!!!: !!:!!.!..!..!|||:!!! !!!.||||||||||||:: erLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuThrAlaGlyLysLe 204843 : GTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGcaggaaaatt : 204899 272 : lPheProValThrMetAlaMetLeuCysAsnLeu : 282 :||||||::!|||||| !! !!!!||||||:!! uPheProMetThrMetLeuThrPheCysAsnVal 204900 : atttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: CbirOr59PN 232 282 . KQ414617.1 204784 204934 + 117 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204785 204934 117 + . gene_id 2 ; sequence CbirOr59PN ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204785 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204785 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204785 204934 117 + . alignment_id 2 ; Query CbirOr59PN ; Align 204785 233 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr57NTE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 321 -> 373 Target range: 1387622 -> 1387778 322 : GluGlyIleTyrTyrAlaValTyrAspTyrAlaTrpTyrLeuLeuLysProLysGl : 340 ||| !!||| ! :!:||||||:::::: |||||| !|||||||||::!|| GluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProArgGl 1387623 : gAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCGAGA : 1387677 341 : uAlaArgSerLeuMetLeuIleMetIleArgAlaAspLysProLeuTyrIleThrA : 359 ||||||| ::::::||||||::::::|||:!!.!.||| !||| :!!|||| uAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuThrA 1387678 : AGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCACTG : 1387734 360 : laGlyArgIlePheProMetThrLeuSerMetPheCysSerIle : 373 |||||!:!.!! ! !:!::!!|||:!! |||..!!::::: laGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387735 : CGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: CbirOr57NTE 321 373 . KQ414716.1 1387622 1387778 + 123 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387623 1387778 123 + . gene_id 1 ; sequence CbirOr57NTE ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387623 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387623 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387623 1387778 123 + . alignment_id 1 ; Query CbirOr57NTE ; Align 1387623 322 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr74CTE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 335 -> 386 Target range: 1387622 -> 1387775 336 : GluHisIleHisTyrThrValTyrAsnTyrLysTrpTyrThrLeuAspProArgAs : 354 |||!.!||| ! :!:|||||||||::: |||||| !||| ! ||||||.! GluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProArgGl 1387623 : gAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCGAGA : 1387677 355 : nValLysValLeuLeuPheLeuMetValArgSerSerLysProThrTyrLeuThrA : 373 .!.!:::::::::|||...:::::::::||||||..!||| ! ! ||||||| uAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuThrA 1387678 : AGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCACTG : 1387734 374 : laGlyLysIlePheProMetThrMetSerThrPheCysSer : 386 ||||||||.!! ! !:!::!!:!!:!!.!!|||..!!:: laGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn 1387735 : CGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAt : 1387775 vulgar: CbirOr74CTE 335 386 . KQ414716.1 1387622 1387775 + 116 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387623 1387775 116 + . gene_id 1 ; sequence CbirOr74CTE ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387623 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387623 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387623 1387775 116 + . alignment_id 1 ; Query CbirOr74CTE ; Align 1387623 336 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr58NTE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 318 -> 371 Target range: 1387619 -> 1387778 319 : AlaGluGlyValTyrTyrAlaThrTyrGluTyrAlaTrpTyrSerLeuLysProAs : 337 :::||| !!:!! ! :!:...|||...::: ||||||..!|||||||||.. SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 338 : nGlnAlaLysAspLeuMetLeuIleMetIleArgAlaGluLysProLeuTyrIleT : 356 .:!!|||::: ::::::||||||::::::|||:!!:!!||| !||| :!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 357 : hrAlaGlyArgIlePheProMetThrLeuSerMetPheCysSerLeu : 371 ||||||||!:!.!! ! !:!::!!|||:!! |||..!!::::: hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: CbirOr58NTE 318 371 . KQ414716.1 1387619 1387778 + 113 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387778 113 + . gene_id 1 ; sequence CbirOr58NTE ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387778 113 + . alignment_id 1 ; Query CbirOr58NTE ; Align 1387620 319 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr63NTE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 322 -> 374 Target range: 1387622 -> 1387778 323 : GluAlaValTyrAspAlaAlaTyrGluTyrAsnTrpTyrThrLeuGluProLysLy : 341 ||| !:!! .!.:!:...|||...::: |||||| !|||:!!|||::!:! GluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProArgGl 1387623 : gAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCGAGA : 1387677 342 : sAlaArgAsnIleLeuMetIleMetIleArgAlaAsnLysProLeuTyrLeuThrA : 360 !|||||| :::|||:::|||::::::|||:!!.!.||| !||| ||||||| uAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuThrA 1387678 : AGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCACTG : 1387734 361 : laGlyLysLeuPheProLeuThrMetAlaMetPheCysAsnLeu : 374 ||||||||!!! ! !|||:!!:!!||| |||..!|||::: laGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387735 : CGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: CbirOr63NTE 322 374 . KQ414716.1 1387622 1387778 + 124 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387623 1387778 124 + . gene_id 1 ; sequence CbirOr63NTE ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387623 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387623 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387623 1387778 124 + . alignment_id 1 ; Query CbirOr63NTE ; Align 1387623 323 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr86NTE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 320 -> 373 Target range: 1387619 -> 1387778 321 : SerGluGlyIleTyrGluAlaValCysGlnTyrGluTrpTyrLysLeuLysProTr : 339 |||||| !!||| :!!:!:||| ...::: |||||| ! ||||||||| ! SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 340 : pGlnAlaLysAspPheLeuAsnIleMetIleGlnAlaArgArgProLeuTyrLeuT : 358 :!!|||::: ||| |||::::::::::!!!:!!:! !||| |||| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 359 : hrAlaGlyLysLeuPheProMetThrIleAlaThrLeuCysAsnLeu : 373 |||||||||||!!! ! !:!::!!:!:|||.!!!!!..!|||::: hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: CbirOr86NTE 320 373 . KQ414716.1 1387619 1387778 + 100 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387778 100 + . gene_id 1 ; sequence CbirOr86NTE ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387778 100 + . alignment_id 1 ; Query CbirOr86NTE ; Align 1387620 321 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr88NC Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 322 -> 372 Target range: 1395329 -> 1395479 323 : GlyIleTyrHisAlaAlaTyrGluTyrGluTrpTyrMetLeuArgProGluGluAl : 341 ..!||| !:!!|||||||||...! ||||||:!:||| !|||:!!!!: SerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGlnAspAr 1395330 : TCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCAAGACAG : 1395384 342 : aLysThrLeuIleIleIleMetIleArgAlaSerLysProLeuTyrIleThrAlaG : 360 ! ! ! !:!!|||:!!:!!|||||||||:!!..!!:!! !||| |||||||||| gHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleThrAlaG 1395385 : ACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCACCGCTG : 1395441 361 : lyArgMetPheProMetThrMetSerMetPheCysAsn : 372 ||!:!.!..!. !:!!:!!:!:..! |||...||| lyLysPheMetAspLeuSerLeuGluGlyPheAlaAsn 1395442 : GAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAAT : 1395479 vulgar: CbirOr88NC 322 372 . KQ414716.1 1395329 1395479 + 106 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395330 1395479 106 + . gene_id 1 ; sequence CbirOr88NC ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395330 1395479 . + . KQ414716.1 exonerate:protein2genome:local exon 1395330 1395479 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395330 1395479 106 + . alignment_id 1 ; Query CbirOr88NC ; Align 1395330 323 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr74CTE Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 346 -> 384 Target range: 892550 -> 892664 347 : TrpTyrThrLeuAspProArgAsnValLysValLeuLeuPheLeuMetValArgSerS : 366 |||||||||||| ! !!:! ! !...::: ||||||::!!.!||||||| TrpTyrThrLeuProLysLysCysHisSerLeuTyrLysPheLeuLeuAlaArgSerS 892551 : TGGTACACACTTCCTAAGAAGTGTCACagtttatataaatttttgctGGCAAGAAGTT : 892608 367 : erLysProThrTyrLeuThrAlaGlyLysIlePheProMetThrMetSerThrPhe : 384 ||||||||!:! ! :!!|||||| !|||:!! ||||||||||||..!|||||| erLysProSerLysIleThrAlaTyrLysLeuAlaProMetThrMetGluThrPhe 892609 : CGAAACCTAGTAAAATAACAGCTTATAAACTAGCACCCATGACGATGGAGACGTTT : 892664 vulgar: CbirOr74CTE 346 384 . KQ414735.1 892550 892664 + 101 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 892551 892664 101 + . gene_id 1 ; sequence CbirOr74CTE ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 892551 892664 . + . KQ414735.1 exonerate:protein2genome:local exon 892551 892664 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 892551 892664 101 + . alignment_id 1 ; Query CbirOr74CTE ; Align 892551 347 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr66NTE Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 162 -> 247 Target range: 1344684 -> 1344942 163 : MetProLeuGlnThrTyrTyrIleTyrAspIleThrLysArgProGlnPheGluLe : 181 :!:|||:!!:!!..! !!:!!:!:|||!!::!:|||:!! !! ! !!:!! || LeuProMetLysValAsnHisLeuTyrGluValThrGluValArgThrTyrAlaLe 1344685 : CTACCAATGAAAGTGAACCACCTGTACGAAGTGACAGAGGTGCGGACGTACGCTTT : 1344739 182 : uThrPheLeuSerGlnIleIleSerCysIlePheAlaLeuIleProTyrThrAlaI : 200 | !! !:!!! ! :!! !!! !!!!:!!. ! !||| ! |||!.! uPheCysValTyrPheValProThrSerMetLeuLeuThrIleGlyAlaThrGlyA 1344740 : GTTCTGCGTTTACTTCGTACCGACGAGCATGTTACTAACAATCGGTGCAACTGGCG : 1344796 201 : leAspAsnPheLeuGlyLeuLeuThrPheHisIleCysGlyGlnLeuIleIleLeu : 218 !|||!:!.!!|||! ! !||||||||||||:!!|||.!!|||!!! |||||| laAspSerLeuLeuValThrLeuThrPheHisLeuCysSerGlnPheSerIleLeu 1344797 : CCGACAGTCTTCTAGTCACCTTGACTTTCCATCTTTGCAGTCAATTTTCGATcctg : 1344850 219 : LysAsnArgLeuIleHisIleAsn<->GluGlnLysAsnPheHisGluGluLeuLy : 236 ...:::|||::: :!!|||:!! |||! !:!!!!.!:! ! !:!!:!!|| SerSerArgValLysAsnIleAspValGluProGlnLysTyrPheProGlnMetLy 1344851 : tcgagccgtgtaaaaAATATCGACGTCGAGCCGCAAAAGTATTTCCCACAAATGAA : 1344907 237 : sAspCysIleIleCysHisIleArgLeuLeuArg : 247 |! !:!! ! ! |||! !..!||||||||| sAlaLeuValGluArgHisThrGluLeuLeuArg 1344908 : AGCACTCGTTGAACGGCACACCGAACTTCTACGG : 1344942 vulgar: CbirOr66NTE 162 247 . KQ414782.1 1344684 1344942 + 100 M 64 192 G 0 3 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1344685 1344942 100 + . gene_id 1 ; sequence CbirOr66NTE ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1344685 1344942 . + . KQ414782.1 exonerate:protein2genome:local exon 1344685 1344942 . + . insertions 3 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1344685 1344942 100 + . alignment_id 1 ; Query CbirOr66NTE ; Align 1344685 163 192 ; Align 1344880 227 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr74CTE Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 342 -> 384 Target range: 1345588 -> 1345714 343 : TyrAsnTyrLysTrpTyrThrLeuAspProArgAsnValLysValLeuLeuPheLe : 361 ||| ! !!!.|||||| !||| !!:! !!..!::! !|||:!!|||! TyrPheSerAsnTrpTyrAspLeuProAspLysTyrThrArgSerLeuIlePheCy 1345589 : TACTTCAGTAATTGGTACGATTTACCAGATAAATACACGCGATCGTTAATATTTTG : 1345643 362 : uMetValArgSerSerLysProThrTyrLeuThrAlaGlyLysIlePheProMetT : 380 !!!:!.!||||||..!||||||:!!||||||||||||||||||.!!!:! !.!.: sIleAlaArgSerGlnLysProSerTyrLeuThrAlaGlyLysPheTyrValPheS 1345644 : CATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAGCTGGCAAGTTCTACGTGTTCT : 1345700 381 : hrMetSerThrPhe : 384 !!:!:..!|||||| erLeuGluThrPhe 1345701 : CGTTAGAAACATTC : 1345714 vulgar: CbirOr74CTE 342 384 . KQ414782.1 1345588 1345714 + 101 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345589 1345714 101 + . gene_id 1 ; sequence CbirOr74CTE ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345589 1345714 . + . KQ414782.1 exonerate:protein2genome:local exon 1345589 1345714 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345589 1345714 101 + . alignment_id 1 ; Query CbirOr74CTE ; Align 1345589 343 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr83NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 248 Query range: 1 -> 223 Target range: 35906 -> 36950 2 : PheGluTrpAlaValGlnLeuAsnArgAlaSerLeuHisLeuLeuGlyIleTrpProAsn : 21 .!.!!:!::|||:!! !! !|||||| !|||||| !:!!||||||:!:||||||.!. MetAspPheAlaMetGlyTrpAsnArgPheSerLeuSerValLeuGlyValTrpProGlu 35907 : ATGGATTTTGCTATGGGATGGAATCGTTTCAGTTTATCTGTACTTGGCGTGTGGCCAGAA : 35964 22 : ProGluGlu<-><->AsnProLysLysLysLeuMetSerAsnIleArgValPheValThr : 39 |||..!:!! |||! !..!::! ! !:! !||| ! !|||..!||| ProArgLysMetSerAsnLeuSerArgPheAlaSerAsnPheIlePheTrpPheThrThr 35965 : CCGAGAAAGATGTCTAACCTGTCACGATTCGCGTCTAACTTTATATTCTGGTTCACGACT : 36024 40 : PheValLeuValIleSerLeuLeuValProSerIleHisSerLeuIleLysIleArgSer : 59 !!.:!! !|||:!!! !:!!! !!.!|||..!!!: !|||:!! ::: LeuIleThrValValPheIleCysAlaProGlnMetThrHisLeuValLeuLysSerThr 36025 : TTGATAACGGTTGTCTTCATATGCGCTCCCCAAATGACGCATTTGGTAttaaaatcgacg : 36084 60 : AspIleMetMetThrIleAspAsnLeuGlnTyrThrLeuProValLeuSerAlaIleIle : 79 :::::: !..!|||!!:||||||..! !!.!:!!|||:!!|||! !:!!:!: ! AsnLeuAspGluValIleGluAsnLeuSerValAsnIleProMetLeuPheSerLeuGly 36085 : aatttgGACGAGGTGATAGAGAATCTGTCGGTCAACATACCGATGCTCTTCTCATTGGGC : 36144 80 : ArgLeuAlaIlePheTrpTrpArgLysGlu{V} >>>> Target Intron 1 >>>> : 90 !:!! ! !|||.!. ! !::|||!:!:!!{!} 381 bp LysGlnIleIleLeuArgTyrArgArgLys{A}++ 36145 : AAGCAAATCATTCTGCGTTATCGTAGAAAA{G}gt......................... : 36180 91 : {al}LeuMetProIleMetAsnMetValMetGluAspTrpLeuLysSerLysThrIle : 108 {.!}|||:!: !:!!|||!:!...:!!.!.!!:|||||| !:!! !!! !! ++{la}LeuValPheLeuMetSerGlnIlePheAspAspTrpAlaGluProIleProGlu 36181 : ag{CG}CTAGTATTCTTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAG : 36612 109 : TyrGluArgAsnThrMetIleLysTrpAlaLeuArgGluArgIleIleIleThrIleThr : 128 !!:|||:!!||||||:!:||| ||| !! !...|||!!:||| !! !:!! ! ValAspArgHisThrMetLeuLysThrAlaLysIleSerArgMetIleSerIleValCys 36613 : GTGGATCGCCACACGATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTCTGT : 36672 129 : TyrLeuIleIleMetMetValIleIleLeuLeuPheGlyMetSerIlePheGlyLysSer : 148 ! !:!!:!:! :!::!!:!!:!: !!!!!!...!:!:..!|||!:: !..||| SerIleLeuThrTyrValMetValLeuAlaPheLeuSerLeuGlnIleTrp---SerSer 36673 : TCTATCCTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGG---AGCAGC : 36729 149 : MetArgLeuThrSerAsnIleThrAspSerTyrArgSerLeuProValGlnThrTyrTyr : 168 |||!:! !||||||.!..!! !:! !!.!!|||! !:!!! !.!! !:! MetGlnAsnThrSerGluPhe------AsnValGlyGlyLeuLeuIleProAlaThrPhe 36730 : ATGCAAAACACCTCGGAGTTC------AACGTAGGAGGACTACTTATCCCGGCCACATTT : 36783 169 : IleTyrAspValThrLysArgProGlnTyrGluLeuThrIleIleSerGlnTyrIleSer : 188 !||||||..!!.!|||!!!|||.!.||||||:!!||| :!!.!!|||!:!:!:.!! ProTyrAspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGly 36784 : CCATACGACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGG : 36843 189 : LeuIleIleAlaAlaMetLeuTyrThrGlyIleAspAsnPhePheGlyLeuLeuValPhe : 208 !:!::!:::!|||!!:! !|||:!! !!.!!|||!..||| !!!.!:!!||||||!!. ThrValLeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeu 36844 : ACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTA : 36903 209 : HisIleCysGlyGlnLeuAspIleMetArgTyrArgLeuLysHis : 223 |||||||||||||||||| !:!!:!:||| ! !|||:!!:!! HisIleCysGlyGlnLeuThrValLeuArgIleAlaLeuGluAsn 36904 : CACATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTCGAGAAT : 36950 vulgar: CbirOr83NTE 1 223 . KQ414804.1 35906 36950 + 248 M 23 69 G 0 6 M 65 195 S 0 1 5 0 2 I 0 377 3 0 2 S 1 2 M 55 165 G 1 0 M 9 27 G 2 0 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 35907 36950 248 + . gene_id 1 ; sequence CbirOr83NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 35907 36177 . + . KQ414804.1 exonerate:protein2genome:local exon 35907 36177 . + . insertions 6 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 36178 36179 . + . intron_id 1 ; splice_site "gt" KQ414804.1 exonerate:protein2genome:local intron 36178 36558 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 36557 36558 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 36559 36950 . + . KQ414804.1 exonerate:protein2genome:local exon 36559 36950 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 35907 36950 248 + . alignment_id 1 ; Query CbirOr83NTE ; Align 35907 2 69 ; Align 35982 25 195 ; Align 36561 91 165 ; Align 36726 147 27 ; Align 36753 158 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr83NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 4 -> 222 Target range: 30797 -> 31515 5 : AlaValGlnLeuAsnArgAlaSerLeuHisLeuLeuGlyIleTrpProAsnProGluGlu : 24 |||:!! !! !|||||| !!:!:!!.!.|||:!!||||||||||||.!.|||.....! AlaLeuGlyTrpAsnArgTrpAsnMetGluLeuValGlyIleTrpProGluProSerArg 30798 : GCACTTGGATGGAACCGTTGGAACATGGAACTGGTTGGAATTTGGCCAGAACCGAGCAGA : 30855 25 : AsnProLysLysLysLeuMetSerAsnIleArgValPheValThrPheValLeuValIle : 44 ::! !:!!::! !! !! ! !!!. ! !:!!|||:!! ||||||::::::... SerAspGlnArgTrpProAsnPheLysAlaLeuLeuPheIle---PheValIleIlePhe 30856 : TCTGATCAACGATGGCCGAATTTCAAGGCTTTGCTGTTCATT---TTTGtgataatattt : 30912 45 : SerLeuLeuValProSerIleHisSerLeuIleLysIleArgSerAspIleMetMetThr : 64 !! !|||..!! ! !:!|||:!! ||| !!.!!|||:!! :!!..! PheGlyThrGlyProGlnSerValAsnLeuLeuPheIleTrpGlyAspLeuGlyLeuVal 30913 : tttggaaCCGGACCTCAGAGCGTGAATCTACTTTTCATATGGGGAGACCTTGGATTGGTC : 30972 65 : IleAspAsnLeuGln<->TyrThrLeuProValLeuSerAlaIleIleArgLeuAlaIle : 83 ! !!:||||||... !!.!:!!|||! !:!!!:!|||!!:!!:!:!||| !||| ThrGluAsnLeuSerThrAlaAsnIleProGlyIleAsnAlaMetMetLysLeuIleIle 30973 : ACGGAAAATCTGTCCACGGCTAATATTCCCGGCATAAACGCCATGATGAAACTGATTATC : 31032 84 : PheTrpTrpArgLysGlu{V} >>>> Target Intron 1 >>>> {al}LeuMet : 92 !||| !.!!:!!!:{!} 67 bp {.!}.!!! ! AlaTrpHisHisArgAsp{A}++ ++{la}PheLys 31033 : GCCTGGCATCACAGAGAT{G}gt.........................ag{ct}tTCAAG : 31126 93 : ProIleMetAsnMetValMetGluAspTrpLeuLysSerLysThrIleTyrGluArgAsn : 112 |||:!!!!:!!. !! !!:|||||| !! |||!:!||| |||:::... ProValIleLysSerPheTyrAspAspTrpLysThrSerArgThrLysGluGluLysGlu 31127 : CCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACcaaggaggagaaggag : 31186 113 : ThrMetIleLysTrpAlaLeuArgGluArgIleIleIleThrIleThrTyrLeuIleIle : 132 ||||||:!:||| ! ||| ! !! !!:! !|||:!!||| !! !! !:!!:!! ThrMetLeuLysArgAlaLysPheAlaLys---GlnIleSerIleTrpCysSerValLeu 31187 : acCATGTTGAAGAGAGCCAAATTTGCGAAA---CAAATTTCCATCTGGTGCTCAGTATTA : 31243 133 : MetMetValIleIleLeuLeuPheGlyMetSerIlePheGlyLysSerMetArgLeuThr : 152 ! :!!..!!!::!! !:!!!:! !! ! ! !!! ! ! !:!||| ! ThrLeuThrMetValThrValTyrLeuSerLeuArgAlaTrpIleIleTyrGlnLeuAsp 31244 : ACCTTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATCTACCAGCTTGAT : 31303 153 : SerAsnIleThrAspSerTyrArgSerLeuProValGlnThrTyrTyrIleTyrAspVal : 172 !!! ! ! ! ! ..! !!||| !|||! ! !! !|||!:! !!:!|||:!! ArgAlaAsnGlnLysGlnAspArgLeuLeuLeuTyrProGlyTyrPheProPheAspIle 31304 : AGGGCAAACCAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTATTTTCCCTTCGATATT : 31363 173 : ThrLysArgProGlnTyrGluLeuThrIleIleSerGlnTyrIleSerLeuIleIleAla : 192 ! !! ! ! ! !! !|||! !.!!.!!||| :!!:!! ! ! !||| ArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeuAlaAlaTyrSerAla 31364 : CGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCAGCGTATTCCGCT : 31423 193 : AlaMetLeuTyrThrGlyIleAspAsnPhePheGlyLeuLeuValPheHisIleCysGly : 212 !.!!!: !|||||| !:!:|||!..|||.!!!.!:!!|||:!!.!.|||||||||||| ValIleSerTyrThrThrValAspThrPheIleAlaMetLeuIleMetHisIleCysGly 31424 : GTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATAATGCACATATGCGGA : 31483 213 : GlnLeuAspIleMetArgTyrArgLeuLys : 222 |||!!!!!:|||:!!||| ! !:!|||::! GlnPheGluIleLeuArgGlnLysLeuArg 31484 : CAATTTGAGATACTGAGACAGAAATTACGA : 31515 vulgar: CbirOr83NTE 4 222 . KQ414804.1 30797 31515 + 175 M 34 102 G 1 0 M 30 90 G 0 3 M 20 60 S 0 1 5 0 2 I 0 63 3 0 2 S 1 2 M 32 96 G 1 0 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 30798 31515 175 + . gene_id 2 ; sequence CbirOr83NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 30798 31053 . + . KQ414804.1 exonerate:protein2genome:local exon 30798 31053 . + . insertions 3 ; deletions 1 KQ414804.1 exonerate:protein2genome:local splice5 31054 31055 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 31054 31120 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 31119 31120 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 31121 31515 . + . KQ414804.1 exonerate:protein2genome:local exon 31121 31515 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 30798 31515 175 + . alignment_id 2 ; Query CbirOr83NTE ; Align 30798 5 102 ; Align 30900 40 90 ; Align 30993 70 60 ; Align 31123 91 96 ; Align 31219 124 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr83NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 161 -> 218 Target range: 44874 -> 45045 162 : LeuProValGlnThrTyrTyrIleTyrAspValThrLysArgProGlnTyrGluLeuThr : 181 |||! ! !!!::.!!|||!:! !|||||| ! ! !!!|||.!.||||||!!!||| LeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThr 44875 : CTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACA : 44932 182 : IleIleSerGlnTyrIleSerLeuIleIleAlaAlaMetLeuTyrThrGlyIleAspAsn : 201 :!:|||:!!||| !|||:!! !.!! !||||||! !||||||!.!:!!|||!.! ValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThr 44933 : GTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACT : 44992 202 : PhePheGlyLeuLeuValPheHisIleCysGlyGlnLeuAspIleMetArg : 218 |||.!!! !:!!|||:!!.!.|||:!!||||||||||||...! !:!!||| PheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArg 44993 : TTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGA : 45045 vulgar: CbirOr83NTE 161 218 . KQ414804.1 44874 45045 + 132 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44875 45045 132 + . gene_id 3 ; sequence CbirOr83NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44875 45045 . + . KQ414804.1 exonerate:protein2genome:local exon 44875 45045 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44875 45045 132 + . alignment_id 3 ; Query CbirOr83NTE ; Align 44875 162 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr82 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 99 -> 233 Target range: 36557 -> 36947 100 : AlaPheThrSerIleValAsnMetIleValGluAspTrpLeuLysSerThrAsnIleHis : 119 |||.!...!! !:!!:!!!:!...||| !!!!:|||||| !:!! !!! ! AlaLeuValPheLeuMetSerGlnIlePheAspAspTrpAlaGluProIleProGluVal 36558 : GCGCTAGTATTCTTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTG : 36615 120 : GluArgLysThrMetIleLysTrpAlaLeuArgAlaArgIlePheIleThrCysSerTyr : 139 !!:||| ! ||||||:!:||| ||| !! !::!|||!!: |||:!! !! ! AspArgHisThrMetLeuLysThrAlaLysIleSerArgMet---IleSerIleValCys 36616 : GATCGCCACACGATGCTGAAGACCGCGAAAATTAGTCGAATG---ATATCCATAGTCTGT : 36672 140 : IleLeuIleThrIleGlyLeuIleIlePhePheValIleGlyProIlePheGlyLysSer : 159 !:!!:!:||| !! !:!!:!!:!: !|||:!! ! !! !|||!:: !..||| SerIleLeuThrTyrValMetValLeuAlaPheLeuSerLeuGlnIleTrp---SerSer 36673 : TCTATCCTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGG---AGCAGC : 36729 160 : MetThrLeuThrSerAsnIleThrAspSerSerArgSerLeuThrLeuProThrTyrTyr : 179 ||| ! !||||||.!..!! !:! ! !!.!!||| !:!!|||.!! !:! MetGlnAsnThrSerGluPhe------AsnValGlyGlyLeuLeuIleProAlaThrPhe 36730 : ATGCAAAACACCTCGGAGTTC------AACGTAGGAGGACTACTTATCCCGGCCACATTT : 36783 180 : IleTyrAspValThrLysArgProGlnTyrGluLeuThrIleIleSerGlnCysIleSer : 199 !||||||..!!.!|||!!!|||.!.||||||:!!||| :!!.!!|||! !:!:.!! ProTyrAspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGly 36784 : CCATACGACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGG : 36843 200 : IleThrThrThrGlyIleLeuTyrIleGlyIleAspAsnPhePheGlyLeuLeuValPhe : 219 ! !..! !!:!!.!|||! !||| ! !!.!!|||!..||| !!!.!:!!||||||!!. ThrValLeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeu 36844 : ACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTA : 36903 220 : HisIleCysGlyGlnLeuAsnIleMetArgAsnArgLeuLys : 233 ||||||||||||||||||!.!:!!:!:|||! ! !|||:!! HisIleCysGlyGlnLeuThrValLeuArgIleAlaLeuGlu 36904 : CACATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTCGAG : 36947 vulgar: CbirOr82 99 233 . KQ414804.1 36557 36947 + 136 M 34 102 G 1 0 M 22 66 G 1 0 M 9 27 G 2 0 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36558 36947 136 + . gene_id 1 ; sequence CbirOr82 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36558 36947 . + . KQ414804.1 exonerate:protein2genome:local exon 36558 36947 . + . insertions 0 ; deletions 4 KQ414804.1 exonerate:protein2genome:local similarity 36558 36947 136 + . alignment_id 1 ; Query CbirOr82 ; Align 36558 100 102 ; Align 36660 135 66 ; Align 36726 158 27 ; Align 36753 169 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr82 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 168 -> 247 Target range: 44862 -> 45099 169 : SerSerArgSerLeuThrLeuProThrTyrTyrIleTyrAspValThrLysArgProGln : 188 |||.!!! !!!!||| !!!!! !.!!|||!:! !|||||| ! ! !!!|||.!. SerGlyThrArgLeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsn 44863 : AGCGGCACCAGACTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAAT : 44920 189 : TyrGluLeuThrIleIleSerGlnCysIleSerIleThrThrThrGlyIleLeuTyrIle : 208 ||||||!!!|||:!:|||:!!||| !|||:!! ! ! !.!!!.!! ! !|||! ! TyrGluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThr 44921 : TACGAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACA : 44980 209 : GlyIleAspAsnPhePheGlyLeuLeuValPheHisIleCysGlyGlnLeuAsnIleMet : 228 !.!:!!|||!.!|||.!!! !:!!|||:!!.!.|||:!!||||||||||||:::! !:!! AlaValAspThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeu 44981 : GCCGTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTG : 45040 229 : ArgAsnArgLeuLysCysAsnHisGluAsnPheArgValValLeuArgAlaSerVal : 247 ||||||..!!!! !!!.! ! ! !!:!|||..!|||!:!|||!.!:!! ArgAsnGluPheGlyLysLeuGlnAlaCysAspLysValThrLeuGlnAlaLysLeu 45041 : AGAAACGAATTCGGTAAGCTTCAAGCATGCGATAAAGTAACATTACAGGCGAAGTTG : 45099 vulgar: CbirOr82 168 247 . KQ414804.1 44862 45099 + 125 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44863 45099 125 + . gene_id 2 ; sequence CbirOr82 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44863 45099 . + . KQ414804.1 exonerate:protein2genome:local exon 44863 45099 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44863 45099 125 + . alignment_id 2 ; Query CbirOr82 ; Align 44863 169 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr82 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 97 -> 233 Target range: 31113 -> 31515 98 : LysLysAlaPheThrSerIleValAsnMetIleValGluAspTrpLeuLysSerThrAsn : 117 ...|||||||||! ! !!:!!:!!!!. .!! !!!:|||||| !! |||! !!.. AsnLysAlaPheLysProValIleLysSerPheTyrAspAspTrpLysThrSerArgThr 31114 : aacaaagcttTCAAGCCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACc : 31171 118 : IleHisGluArgLysThrMetIleLysTrpAlaLeuArgAlaArg<->IlePheIleThr : 136 ...|||::::::||||||:!:||| ! ||| ! !|||!:! |||! !||| ! LysGluGluLysGluThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIleTrp 31172 : aaggaggagaaggagacCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGG : 31231 137 : CysSerTyrIleLeuIleThrIleGlyLeuIleIlePhePheValIleGlyProIlePhe : 156 |||||| :!! !:!:|||!!:! ! !:!! !.!. !:!! !!.! !|||.!! CysSerValLeuThrLeuThrMetValThrValTyrLeuSerLeuArgAlaTrpIleIle 31232 : TGCTCAGTATTAACCTTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATC : 31291 157 : GlyLysSerMetThrLeuThrSerAsnIleThrAspSerSerArgSerLeuThrLeuPro : 176 !||| !!!! ! ! ! ! ..!..!||| !||| !! !||| ---------TyrGlnLeuAspArgAlaAsnGlnLysGlnAspArgLeuLeuLeuTyrPro 31292 : ---------TACCAGCTTGATAGGGCAAACCAGAAACAGGATCGTCTGCTCCTGTACCCT : 31342 177 : ThrTyrTyrIleTyrAspValThrLysArgProGlnTyrGluLeuThrIleIleSerGln : 196 !|||!:! !!:!|||:!! ! !! ! ! ! !! !|||! !.!!.!!||| GlyTyrPheProPheAspIleArgProIleGlyValLeuLeuSerThrAsnPheGlyGln 31343 : GGCTATTTTCCCTTCGATATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAA : 31402 197 : CysIleSerIleThrThrThrGlyIleLeuTyrIleGlyIleAspAsnPhePheGlyLeu : 216 :!!:!! !:!!.!!! !||| !|||! ! !:!:|||!..|||.!!!.!:!! ValLeuAlaAlaTyrSerAlaValIleSerTyrThrThrValAspThrPheIleAlaMet 31403 : GTGCTCGCAGCGTATTCCGCTGTTATCAGTTACACCACCGTGGATACATTTATCGCGATG : 31462 217 : LeuValPheHisIleCysGlyGlnLeuAsnIleMetArgAsnArgLeuLys : 233 |||:!!.!.|||||||||||||||!!!.!.|||:!!|||.!.!:!|||::! LeuIleMetHisIleCysGlyGlnPheGluIleLeuArgGlnLysLeuArg 31463 : CTGATAATGCACATATGCGGACAATTTGAGATACTGAGACAGAAATTACGA : 31515 vulgar: CbirOr82 97 233 . KQ414804.1 31113 31515 + 119 M 35 105 G 0 3 M 24 72 G 3 0 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31114 31515 119 + . gene_id 3 ; sequence CbirOr82 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31114 31515 . + . KQ414804.1 exonerate:protein2genome:local exon 31114 31515 . + . insertions 3 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 31114 31515 119 + . alignment_id 3 ; Query CbirOr82 ; Align 31114 98 105 ; Align 31222 133 72 ; Align 31294 160 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr80PN Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 88 -> 216 Target range: 36557 -> 36935 89 : AlaPheThrSerIleValAsnMetIleMetGluAspTrpLeuLysThrLysAsnIleHis : 108 |||.!...!! !:!!:!!!:!...|||.!.!!:|||||| !:!! !!! AlaLeuValPheLeuMetSerGlnIlePheAspAspTrpAlaGluProIleProGluVal 36558 : GCGCTAGTATTCTTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTG : 36615 109 : GluArgLysThrMetIleLysTrpAlaLeuArgAlaArgIleIleIleThrIleThrTyr : 128 !!:||| ! ||||||:!:||| ||| !! !::!||| !!:|||:!!|||..!! ! AspArgHisThrMetLeuLysThrAlaLysIleSerArg---MetIleSerIleValCys 36616 : GATCGCCACACGATGCTGAAGACCGCGAAAATTAGTCGA---ATGATATCCATAGTCTGT : 36672 129 : PheValIleAlaIleAlaLeuMetLeuPhePheValIleGlyProIlePheGlyLysSer : 148 ! !:!!:!:.!! !!.!:!!:!:||| !|||:!! ! !! !|||!:: !..||| SerIleLeuThrTyrValMetValLeuAlaPheLeuSerLeuGlnIleTrp---SerSer 36673 : TCTATCCTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGG---AGCAGC : 36729 149 : MetThrSerAsnIleThrAspSerHisArgSerLeuThrLeuProThrTyrTyrIleTyr : 168 ||| !!:!!.! ! !!:! !!.!!||| !:!!|||.!! !:! !||| MetGlnAsnThrSerGluPheAsnValGlyGlyLeuLeuIleProAlaThrPheProTyr 36730 : ATGCAAAACACCTCGGAGTTCAACGTAGGAGGACTACTTATCCCGGCCACATTTCCATAC : 36789 169 : AspValThrLysArgProGlnTyrGluLeuThrIleIleSerGlnCysIleSerLeuThr : 188 |||..!!.!|||!!!|||.!.||||||:!!||| :!!.!!|||! !:!:.!! !..! AspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrVal 36790 : GACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTG : 36849 189 : ThrGlySerIleLeuTyrThrGlyIleAspAsnPhePheUnkLeuLeuValPheHisIle : 208 !.!!:!!|||! !|||:!! !!.!!|||!..||| !!...:!!||||||!!.|||||| LeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHisIle 36850 : TTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATA : 36909 209 : CysGlyGlnValAsnIleMetArg : 216 |||||||||:!!!.!:!!:!:||| CysGlyGlnLeuThrValLeuArg 36910 : TGCGGCCAATTAACTGTTCTCCGC : 36935 vulgar: CbirOr80PN 88 216 . KQ414804.1 36557 36935 + 154 M 33 99 G 1 0 M 23 69 G 1 0 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36558 36935 154 + . gene_id 1 ; sequence CbirOr80PN ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36558 36935 . + . KQ414804.1 exonerate:protein2genome:local exon 36558 36935 . + . insertions 0 ; deletions 2 KQ414804.1 exonerate:protein2genome:local similarity 36558 36935 154 + . alignment_id 1 ; Query CbirOr80PN ; Align 36558 89 99 ; Align 36657 123 69 ; Align 36726 147 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr80PN Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 155 -> 219 Target range: 44862 -> 45054 156 : SerHisArgSerLeuThrLeuProThrTyrTyrIleTyrAspValThrLysArgProGln : 175 ||| !! !!!!||| !!!!! !.!!|||!:! !|||||| ! ! !!!|||.!. SerGlyThrArgLeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsn 44863 : AGCGGCACCAGACTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAAT : 44920 176 : TyrGluLeuThrIleIleSerGlnCysIleSerLeuThrThrGlySerIleLeuTyrThr : 195 ||||||!!!|||:!:|||:!!||| !|||:!! ! ! !!.!:!!! ! !|||||| TyrGluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThr 44921 : TACGAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACA : 44980 196 : GlyIleAspAsnPhePheUnkLeuLeuValPheHisIleCysGlyGlnValAsnIleMet : 215 !.!:!!|||!.!|||.!! :!!|||:!!.!.|||:!!|||||||||:!!:::! !:!! AlaValAspThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeu 44981 : GCCGTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTG : 45040 216 : ArgTyrHisPhe : 219 ||| !!.!.||| ArgAsnGluPhe 45041 : AGAAACGAATTC : 45054 vulgar: CbirOr80PN 155 219 . KQ414804.1 44862 45054 + 126 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44863 45054 126 + . gene_id 2 ; sequence CbirOr80PN ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44863 45054 . + . KQ414804.1 exonerate:protein2genome:local exon 44863 45054 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44863 45054 126 + . alignment_id 2 ; Query CbirOr80PN ; Align 44863 156 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr79NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 184 Query range: 4 -> 222 Target range: 30797 -> 31515 5 : AlaValLysLeuAsnArgAlaGlyLeuAsnLeuIleGlyLeuTrpProThrProGlnGlu : 24 |||:!! !! !|||||| !..!:!!.!.|||:!!|||:!!|||||| !|||.....! AlaLeuGlyTrpAsnArgTrpAsnMetGluLeuValGlyIleTrpProGluProSerArg 30798 : GCACTTGGATGGAACCGTTGGAACATGGAACTGGTTGGAATTTGGCCAGAACCGAGCAGA : 30855 25 : SerThrArgGlnArgLeuIleAsnAsnIleArgIleValPheThrPheLeuValValThr : 44 ||| ! ||||||! ! ||| !! !:!::!!|||! !|||::::::::: SerAsp---GlnArgTrpProAsnPheLysAlaLeuLeuPheIlePheValIleIlePhe 30856 : TCTGAT---CAACGATGGCCGAATTTCAAGGCTTTGCTGTTCATTTTTGtgataatattt : 30912 45 : SerLeuLeuValProSerIleHisSerLeuIleLysThrHisSerAspIleMetLeuThr : 64 !! !|||..!! ! !:!|||:!! ! ! .!!|||:!! |||..! PheGlyThrGlyProGlnSerValAsnLeuLeuPheIleTrpGlyAspLeuGlyLeuVal 30913 : tttggaaCCGGACCTCAGAGCGTGAATCTACTTTTCATATGGGGAGACCTTGGATTGGTC : 30972 65 : IleAspAsnLeuGln<->IleThrLeuProValLeuSerSerIleIleArgLeuProIle : 83 ! !!:||||||... !!.!:!!|||! !:!!!:!:!!!!:!!:!:!||| !||| ThrGluAsnLeuSerThrAlaAsnIleProGlyIleAsnAlaMetMetLysLeuIleIle 30973 : ACGGAAAATCTGTCCACGGCTAATATTCCCGGCATAAACGCCATGATGAAACTGATTATC : 31032 84 : PheTrpArgArgLysLys{A} >>>> Target Intron 1 >>>> {la}LeuThr : 92 !|||!.!!.!!:! ! {|} 67 bp {||}.!!! ! AlaTrpHisHisArgAsp{A}++ ++{la}PheLys 31033 : GCCTGGCATCACAGAGAT{G}gt.........................ag{ct}tTCAAG : 31126 93 : LeuIleIleAsnMetIleValGlnAspTrpLeuThrThrLysAsnIleArgGluArgLys : 112 ! !:!!|||!!. .!! !.!.|||||| !|||:!!!:!!.. ...|||:::::: ProValIleLysSerPheTyrAspAspTrpLysThrSerArgThrLysGluGluLysGlu 31127 : CCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACcaaggaggagaaggag : 31186 113 : ThrMetIleLysTrpAlaSerArgAlaArgIlePheIleIleCysThrTyrIleIleIle : 132 ||||||:!:||| ! |||!.! !|||!:! !.!! !|||!! !! :!!:!!! ! ThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIleTrpCysSerValLeuThr 31187 : acCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGGTGCTCAGTATTAACC : 31246 133 : ValThrSerIleIleIleMetPheValIleProIlePheGlyLysSerMetThrLeuAla : 152 :!!|||! !:!!! !:!! .!. !:!!! ! !:: !! ! !..! ! ! ! LeuThrMetValThrValTyrLeuSerLeuArgAlaTrpIleIleTyrGlnLeuAspArg 31247 : TTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATCTACCAGCTTGATAGG : 31306 153 : LeuAsnIleThrAspSerGlyLysSerLeuProLeuSerThrPheTyrIleTyrAspVal : 172 !||| ! ! ..!! !::: !|||! !! ! !! !!:!!:! !!:!|||:!! AlaAsn---GlnLysGlnAspArgLeuLeuLeuTyrProGlyTyrPheProPheAspIle 31307 : GCAAAC---CAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTATTTTCCCTTCGATATT : 31363 173 : ThrLysArgProGlnTyrGluLeuThrIleIleAsnGlnCysIleSerMetIleThrAla : 192 ! !! ! ! ! !! !|||! !.!!..!||| :!!:!! ! !:!!||| ArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeuAlaAlaTyrSerAla 31364 : CGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCAGCGTATTCCGCT : 31423 193 : AlaIleLeuTyrThrGlyIleAspAsnPhePheGlyLeuLeuValPheHisIleCysGly : 212 !.!||| !|||||| !:!:|||!..|||.!!!.!:!!|||:!!.!.|||||||||||| ValIleSerTyrThrThrValAspThrPheIleAlaMetLeuIleMetHisIleCysGly 31424 : GTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATAATGCACATATGCGGA : 31483 213 : GlnLeuAsnIleValArgAsnArgLeuLys : 222 |||!!!.!.|||:!!|||.!.!:!|||::! GlnPheGluIleLeuArgGlnLysLeuArg 31484 : CAATTTGAGATACTGAGACAGAAATTACGA : 31515 vulgar: CbirOr79NTE 4 222 . KQ414804.1 30797 31515 + 184 M 22 66 G 1 0 M 42 126 G 0 3 M 20 60 S 0 1 5 0 2 I 0 63 3 0 2 S 1 2 M 64 192 G 1 0 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 30798 31515 184 + . gene_id 1 ; sequence CbirOr79NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 30798 31053 . + . KQ414804.1 exonerate:protein2genome:local exon 30798 31053 . + . insertions 3 ; deletions 1 KQ414804.1 exonerate:protein2genome:local splice5 31054 31055 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 31054 31120 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 31119 31120 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 31121 31515 . + . KQ414804.1 exonerate:protein2genome:local exon 31121 31515 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 30798 31515 184 + . alignment_id 1 ; Query CbirOr79NTE ; Align 30798 5 66 ; Align 30864 28 126 ; Align 30993 70 60 ; Align 31123 91 192 ; Align 31315 156 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr79NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 89 -> 223 Target range: 36557 -> 36950 90 : AlaLeuThrLeuIleIleAsnMetIleValGlnAspTrpLeuThrThrLysAsnIleArg : 109 ||||||..!!!!:!!!!:!:!...||| !!.!.|||||| ! ! !!! ! AlaLeuValPheLeuMetSerGlnIlePheAspAspTrpAlaGluProIleProGluVal 36558 : GCGCTAGTATTCTTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTG : 36615 110 : GluArgLysThrMetIleLysTrpAlaSerArgAlaArgIlePheIleIleCysThrTyr : 129 !!:||| ! ||||||:!:||| |||!.!! !::!|||!!:.!. !||| ! !! ! AspArgHisThrMetLeuLysThrAlaLysIleSerArgMetIleSerIleValCysSer 36616 : GATCGCCACACGATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTCTGTTCT : 36675 130 : IleIleIleValThrSerIleIleIleMetPheValIleProIlePheGlyLysSerMet : 149 |||:!:! !..!! !:!!:!: !.!.!!. !:!!! !|||!:: !..|||||| IleLeuThrTyrValMetValLeuAlaPheLeuSerLeuGlnIleTrp---SerSerMet 36676 : ATCCTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGG---AGCAGCATG : 36732 150 : ThrLeuAlaLeuAsnIleThrAspSerGlyLysSerLeuProLeuSerThrPheTyrIle : 169 ! !.!!! !.!..!!!.!! .!!||| ! !:!!||| !!!! !:! ! GlnAsnThrSerGluPheAsnValGlyGlyLeuLeuIleProAlaThr------PhePro 36733 : CAAAACACCTCGGAGTTCAACGTAGGAGGACTACTTATCCCGGCCACA------TTTCCA : 36786 170 : TyrAspValThrLysArgProGlnTyrGluLeuThrIleIleAsnGlnCysIleSerMet : 189 ||||||..!!.!|||!!!|||.!.||||||:!!||| :!!...|||! !:!:.!!! TyrAspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThr 36787 : TACGACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACA : 36846 190 : IleThrAlaAlaIleLeuTyrThrGlyIleAspAsnPhePheGlyLeuLeuValPheHis : 209 :!: !::!||||||! !|||:!! !!.!!|||!..||| !!!.!:!!||||||!!.||| ValLeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHis 36847 : GTGTTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACAC : 36906 210 : IleCysGlyGlnLeuAsnIleValArgAsnArgLeuLysHis : 223 |||||||||||||||!.!:!!:!!|||! ! !|||:!!:!! IleCysGlyGlnLeuThrValLeuArgIleAlaLeuGluAsn 36907 : ATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTCGAGAAT : 36950 vulgar: CbirOr79NTE 89 223 . KQ414804.1 36557 36950 + 152 M 56 168 G 1 0 M 19 57 G 2 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36558 36950 152 + . gene_id 2 ; sequence CbirOr79NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36558 36950 . + . KQ414804.1 exonerate:protein2genome:local exon 36558 36950 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 36558 36950 152 + . alignment_id 2 ; Query CbirOr79NTE ; Align 36558 90 168 ; Align 36726 147 57 ; Align 36783 168 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr79NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 157 -> 219 Target range: 44862 -> 45048 158 : SerGlyLysSerLeuProLeuSerThrPheTyrIleTyrAspValThrLysArgProGln : 177 ||||||! !!!|||! !!!! !!.!!!:!!:! !|||||| ! ! !!!|||.!. SerGlyThrArgLeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsn 44863 : AGCGGCACCAGACTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAAT : 44920 178 : TyrGluLeuThrIleIleAsnGlnCysIleSerMetIleThrAlaAlaIleLeuTyrThr : 197 ||||||!!!|||:!:||| !||| !|||:!! .!! !||||||! ! !|||||| TyrGluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThr 44921 : TACGAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACA : 44980 198 : GlyIleAspAsnPhePheGlyLeuLeuValPheHisIleCysGlyGlnLeuAsnIleVal : 217 !.!:!!|||!.!|||.!!! !:!!|||:!!.!.|||:!!||||||||||||:::! !:!! AlaValAspThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeu 44981 : GCCGTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTG : 45040 218 : ArgAsn : 219 |||||| ArgAsn 45041 : AGAAAC : 45048 vulgar: CbirOr79NTE 157 219 . KQ414804.1 44862 45048 + 137 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44863 45048 137 + . gene_id 3 ; sequence CbirOr79NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44863 45048 . + . KQ414804.1 exonerate:protein2genome:local exon 44863 45048 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44863 45048 137 + . alignment_id 3 ; Query CbirOr79NTE ; Align 44863 158 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr84NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 168 Query range: 1 -> 227 Target range: 30788 -> 31527 2 : PheLysTrpAlaValLysLeuAsnArgIleSerLeuGluPheValGlyLeuTrpProGlu : 21 !!.||| |||:!! !! !|||||| !:!:!!|||.!.||||||:!!||||||||| LeuLysValAlaLeuGlyTrpAsnArgTrpAsnMetGluLeuValGlyIleTrpProGlu 30789 : TTGAAGGTAGCACTTGGATGGAACCGTTGGAACATGGAACTGGTTGGAATTTGGCCAGAA : 30846 22 : SerLysGlnAsnPheArgGluLysLeuLeuCysAsnLeuArgThrPhePheAlaValIle : 41 !!!..::!::! !!::!!! !! ! |||!!!!:!.!!!!..!. !:!!.!! ProSerArgSer------AspGlnArgTrpProAsnPheLysAlaLeuLeuPheIlePhe 30847 : CCGAGCAGATCT------GATCAACGATGGCCGAATTTCAAGGCTTTGCTGTTCATTTTT : 30900 42 : IleValThrIleGlyAlaLeuValProSerIleHisSerLeuIleArgIleHisSerAsn : 61 :::::: ... ... !! !|||..!! ! !:!|||:!! !||| .!!:!! ValIleIlePhePheGlyThrGlyProGlnSerValAsnLeuLeuPheIleTrpGlyAsp 30901 : GtgataatattttttggaaCCGGACCTCAGAGCGTGAATCTACTTTTCATATGGGGAGAC : 30960 62 : IleValLeuThrIleAspAsnLeuGln<->PheThrLeuProIleLeuSerValValIle : 80 :!!! !|||..!! !!:||||||... !!.!:!!||| !:!!!:!!.!:!!!!: LeuGlyLeuValThrGluAsnLeuSerThrAlaAsnIleProGlyIleAsnAlaMetMet 30961 : CTTGGATTGGTCACGGAAAATCTGTCCACGGCTAATATTCCCGGCATAAACGCCATGATG : 31020 81 : LysLeuIleIlePheTrpTrpLysLysGlu{T} >>>> Target Intron 1 >>>> : 91 |||||||||||| !||| ! !:!!!:{.} 67 bp LysLeuIleIleAlaTrpHisHisArgAsp{A}++ 31021 : AAACTGATTATCGCCTGGCATCACAGAGAT{G}gt......................... : 31056 92 : {hr}LeuIleProIleValAspMetIleAlaLysAspTrpLeuLysProLysSerVal : 109 {!!}.!!! |||:!!:!! ! .!! ! ! |||||| !! !!!:!!!: ++{la}PheLysProValIleLysSerPheTyrAspAspTrpLysThrSerArgThrLys 31057 : ag{ct}tTCAAGCCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACcaag : 31174 110 : ArgGluArgAsnThrMetValIleTrpAlaLeuArgAlaArgIleIleIleIleCysSer : 129 ...|||:::...||||||:!!! ! ||| ! !|||!:! !||| !|||!! !!! GluGluLysGluThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIleTrpCys 31175 : gaggagaaggagacCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGGTGC : 31234 130 : TyrValSerMetAlaValAlaTyrIleIlePheIleThrMetProIlePheGlyLysSer : 149 ! |||! !! !..! ! !! !:!!!:!:!!!:!:!:! ! !:: ! ! ! SerValLeuThrLeuThrMetValThrValTyrLeuSerLeuArgAlaTrp---IleIle 31235 : TCAGTATTAACCTTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGG---ATCATC : 31291 150 : MetArgLeuIleThrAsnIleThrAspProGlyArgProMetLeuLeuGlnSerTyrTyr : 169 !:!||| !! ! ! ! ! ! ! !! !|||! !:!:|||! !! .!!|||!:! TyrGlnLeuAspArgAlaAsnGlnLysGlnAspArgLeuLeuLeuTyrProGlyTyrPhe 31292 : TACCAGCTTGATAGGGCAAACCAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTATTTT : 31351 170 : IleTyrAspValThrLysArgProGlnPheGluLeuThrPheIleSerGlnAlaPheSer : 189 !!:!|||:!! ! !! ! ! !.!. !! !||| !.!!.!!|||!.!.!!:!! ProPheAspIleArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeuAla 31352 : CCCTTCGATATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCA : 31411 190 : ThrPheValAlaValLeuProTyrThrGlyIleAspAsnPheLeuGlyLeuLeuThrPhe : 209 .!!!:! !||||||:!! !|||||| !:!:|||!..|||:!!!.!:!!|||! !.!. AlaTyrSerAlaValIleSerTyrThrThrValAspThrPheIleAlaMetLeuIleMet 31412 : GCGTATTCCGCTGTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATAATG : 31471 210 : HisIleCysGlyGlnLeuValIleLeuLysAsnArgPheIleHisLeuHisAsp : 227 |||||||||||||||!!!! !||||||!:!.!.!:!!!. !...||| ||| HisIleCysGlyGlnPheGluIleLeuArgGlnLysLeuArgArgLeuMetAsp 31472 : CACATATGCGGACAATTTGAGATACTGAGACAGAAATTACGAAGGCTGATGGAT : 31527 vulgar: CbirOr84NTE 1 227 . KQ414804.1 30788 31527 + 168 M 24 72 G 2 0 M 43 129 G 0 3 M 20 60 S 0 1 5 0 2 I 0 63 3 0 2 S 1 2 M 55 165 G 1 0 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 30789 31527 168 + . gene_id 1 ; sequence CbirOr84NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 30789 31053 . + . KQ414804.1 exonerate:protein2genome:local exon 30789 31053 . + . insertions 3 ; deletions 2 KQ414804.1 exonerate:protein2genome:local splice5 31054 31055 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 31054 31120 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 31119 31120 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 31121 31527 . + . KQ414804.1 exonerate:protein2genome:local exon 31121 31527 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 30789 31527 168 + . alignment_id 1 ; Query CbirOr84NTE ; Align 30789 2 72 ; Align 30861 28 129 ; Align 30993 71 60 ; Align 31123 92 165 ; Align 31288 148 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr84NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 80 -> 219 Target range: 36527 -> 36935 81 : LysLeuIleIlePheTrpTrpLysLysGluThrLeuIleProIleValAspMetIleAla : 100 |||||||||... ! !... !.!!|||:!! !:!!:!!..!...||| ! LysLeuIlePheThrIleHisThrSerLeuAlaLeuValPheLeuMetSerGlnIlePhe 36528 : AAACtgattttcacaattcacACGTCTCTAGCGCTAGTATTCTTAATGAGCCAAATATTC : 36585 101 : LysAspTrpLeuLysProLysSerValArgGluArgAsnThrMetValIleTrpAlaLeu : 120 ! |||||| !:!!|||! !!! ! !!!:|||:!!||||||:!!! ||| ! AspAspTrpAlaGluProIleProGluValAspArgHisThrMetLeuLysThrAlaLys 36586 : GACGACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACGATGCTGAAGACCGCGAAA : 36645 121 : ArgAlaArgIleIleIleIleCysSerTyrValSerMetAlaValAlaTyrIleIlePhe : 140 ! !::!|||!!:||| !||| !!!!! !:!! !! ! !||| ! !:!: !||| IleSerArgMetIleSerIleValCysSerIleLeuThrTyrValMetValLeuAlaPhe 36646 : ATTAGTCGAATGATATCCATAGTCTGTTCTATCCTGACGTATGTCATGGTTTTGGCCTTC : 36705 141 : IleThrMetProIlePheGlyLysSerMetArgLeuIleThrAsnIleThrAspProGly : 160 :!::!!:!:! !|||!:: !..||||||!:! !! !:!!.!..!!!.!! !||| LeuSerLeuGlnIleTrp---SerSerMetGlnAsnThrSerGluPheAsnValGlyGly 36706 : TTGTCACTTCAAATTTGG---AGCAGCATGCAAAACACCTCGGAGTTCAACGTAGGAGGA : 36762 161 : ArgProMetLeuLeuGlnSerTyrTyrIleTyrAspValThrLysArgProGlnPheGlu : 180 :!:|||:!!! !:!! !:! !||||||..!!.!|||!!!|||.!.!:!||| ------LeuLeuIleProAlaThrPheProTyrAspThrAsnLysSerProAsnTyrGlu 36763 : ------CTACTTATCCCGGCCACATTTCCATACGACACGAATAAAAGTCCTAATTACGAA : 36816 181 : LeuThrPheIleSerGlnAlaPheSerThrPheValAlaValLeuProTyrThrGlyIle : 200 :!!|||!:::!!.!!||| ! ! .!!||| ! :!!::!!.!:!! !|||:!! !!.!! IleThrTrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSerCysPhe 36817 : ATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTC : 36876 201 : AspAsnPheLeuGlyLeuLeuThrPheHisIleCysGlyGlnLeuValIleLeuLys : 219 |||!..|||:!!!.!:!!|||..!!!.||||||||||||||||||..!:!!|||::: AspThrPheValAlaValLeuValLeuHisIleCysGlyGlnLeuThrValLeuArg 36877 : GATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACTGTTCTCCGC : 36935 vulgar: CbirOr84NTE 80 219 . KQ414804.1 36527 36935 + 149 M 66 198 G 1 0 M 13 39 G 2 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36528 36935 149 + . gene_id 2 ; sequence CbirOr84NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36528 36935 . + . KQ414804.1 exonerate:protein2genome:local exon 36528 36935 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 36528 36935 149 + . alignment_id 2 ; Query CbirOr84NTE ; Align 36528 81 198 ; Align 36726 148 39 ; Align 36765 163 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr84NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 159 -> 222 Target range: 44865 -> 45054 160 : GlyArgProMetLeuLeuGlnSerTyrTyrIleTyrAspValThrLysArgProGlnPhe : 179 |||! ! !:!:|||!!!!:::!!|||!:! !|||||| ! ! !!!|||.!.!:! GlyThrArgLeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyr 44866 : GGCACCAGACTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTAC : 44923 180 : GluLeuThrPheIleSerGlnAlaPheSerThrPheValAlaValLeuProTyrThrGly : 199 |||!!!||| ! |||:!!||| !.!.:!!.!!||| !|||!.! ! !!||||||!.! GluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAla 44924 : GAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCC : 44983 200 : IleAspAsnPheLeuGlyLeuLeuThrPheHisIleCysGlyGlnLeuValIleLeuLys : 219 :!!|||!.!|||:!!! !:!!|||! !.!.|||:!!|||||||||||| !! !|||!:! ValAspThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArg 44984 : GTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGA : 45043 220 : AsnArgPhe : 222 |||..!||| AsnGluPhe 45044 : AACGAATTC : 45054 vulgar: CbirOr84NTE 159 222 . KQ414804.1 44865 45054 + 140 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44866 45054 140 + . gene_id 3 ; sequence CbirOr84NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44866 45054 . + . KQ414804.1 exonerate:protein2genome:local exon 44866 45054 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44866 45054 140 + . alignment_id 3 ; Query CbirOr84NTE ; Align 44866 160 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr66NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 90 -> 219 Target range: 36557 -> 36935 91 : AlaLeuValProIleIleAsnMetIleMetGluAspTrpLeuLysArgLysSerValTyr : 110 ||||||||| !:!!!!:!:!...|||.!.!!:|||||| !:!!! !! !!! ! AlaLeuValPheLeuMetSerGlnIlePheAspAspTrpAlaGluProIleProGluVal 36558 : GCGCTAGTATTCTTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTG : 36615 111 : GluArgAsnThrMetIleThrTrpAlaPheArgAlaArgIleIleIleThrCysAlaTyr : 130 !!:|||:!!||||||:!:! ! ||| ! !::!|||!!:||| !! ! !..!! ! AspArgHisThrMetLeuLysThrAlaLysIleSerArgMetIleSerIleValCysSer 36616 : GATCGCCACACGATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTCTGTTCT : 36675 131 : ValSerLeuGlyValAlaTyrIleIleLeuIleGlyValProIlePheGlyLysSerMet : 150 :!! ! ! !||| ! !:!: !!!!:!:..!:!!! !|||!:: !..|||||| IleLeuThrTyrValMetValLeuAlaPheLeuSerLeuGlnIleTrp---SerSerMet 36676 : ATCCTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGG---AGCAGCATG : 36732 151 : ArgLeuThrSerAsnIleThrAspProGlyArgProMetProLeuGlnThrTyrTyrIle : 170 !:! !||||||.!..!!!.!! !|||! !! !!!:||| .!! !:! ! GlnAsnThrSerGluPheAsnValGlyGlyLeuLeuIlePro------AlaThrPhePro 36733 : CAAAACACCTCGGAGTTCAACGTAGGAGGACTACTTATCCCG------GCCACATTTCCA : 36786 171 : TyrAspIleThrLysArgProGlnPheGluLeuThrPheLeuSerGlnIleIleSerCys : 190 ||||||! !.!|||!!!|||.!.!:!|||:!!|||!::|||.!!|||.!!:!:.!! TyrAspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThr 36787 : TACGACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACA : 36846 191 : IlePheAlaLeuIleProTyrThrAlaIleAspAsnPheLeuGlyLeuLeuThrPheHis : 210 :!:!!.::! !||| !|||:!!..!.!!|||!..|||:!!!.!:!!|||..!!!.||| ValLeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHis 36847 : GTGTTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACAC : 36906 211 : IleCysGlyGlnLeuIleIleLeuLys : 219 |||||||||||||||! !:!!|||::: IleCysGlyGlnLeuThrValLeuArg 36907 : ATATGCGGCCAATTAACTGTTCTCCGC : 36935 vulgar: CbirOr66NTE 90 219 . KQ414804.1 36557 36935 + 151 M 56 168 G 1 0 M 17 51 G 2 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36558 36935 151 + . gene_id 1 ; sequence CbirOr66NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36558 36935 . + . KQ414804.1 exonerate:protein2genome:local exon 36558 36935 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 36558 36935 151 + . alignment_id 1 ; Query CbirOr66NTE ; Align 36558 91 168 ; Align 36726 148 51 ; Align 36777 167 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr66NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 8 -> 222 Target range: 30809 -> 31512 9 : HisArgIleSerLeuGluLeuIleGlyLeuTrpProAsnSerGluLeuAsnPheArgLys : 28 :!!||| !:!:!!||||||:!!|||:!!||||||.!. !!... !::! !!:!::! AsnArgTrpAsnMetGluLeuValGlyIleTrpProGluProSerArgSerAspGlnArg 30810 : AACCGTTGGAACATGGAACTGGTTGGAATTTGGCCAGAACCGAGCAGATCTGATCAACGA : 30867 29 : LysLeuIleCysAsnLeuArgValLeuLeuAlaPheLeuMetIleThrIleGlyIleLeu : 48 |||!!!!:!!.!|||||| !.!!!!!:::||| ... ! ------TrpProAsnPheLysAlaLeuLeuPheIlePheValIleIlePhePheGlyThr 30868 : ------TGGCCGAATTTCAAGGCTTTGCTGTTCATTTTTGtgataatattttttggaaCC : 30921 49 : ValProSerIleHisSerLeuIleIleIleArgSerAsnIleGluLeuAlaIleAspAsn : 68 ! !|||..!! ! !:!|||:!!.!!||| !!.!!:!!:!!! !|||!.!! !!:||| GlyProGlnSerValAsnLeuLeuPheIleTrpGlyAspLeuGlyLeuValThrGluAsn 30922 : GGACCTCAGAGCGTGAATCTACTTTTCATATGGGGAGACCTTGGATTGGTCACGGAAAAT : 30981 69 : LeuGln<->CysSerLeuProValLeuThrValValIleArgIleValLeuPheTrpTrp : 87 |||... ..!!:!:!!|||! !:!!!.!!.!:!!!!:!:!:!::!!:!! !||| LeuSerThrAlaAsnIleProGlyIleAsnAlaMetMetLysLeuIleIleAlaTrpHis 30982 : CTGTCCACGGCTAATATTCCCGGCATAAACGCCATGATGAAACTGATTATCGCCTGGCAT : 31041 88 : LysLysGlu{A} >>>> Target Intron 1 >>>> {la}LeuValProIleIle : 96 ! !:!!!:{|} 67 bp {||}.!! !|||:!!||| HisArgAsp{A}++ ++{la}PheLysProValIle 31042 : CACAGAGAT{G}gt.........................ag{ct}tTCAAGCCCGTTATA : 31135 97 : AsnMetIleMetGluAspTrpLeuLysArgLysSerValTyrGluArgAsnThrMetIle : 116 !!. .!! !!:|||||| !! !!:!!!: |||:::...||||||:!: LysSerPheTyrAspAspTrpLysThrSerArgThrLysGluGluLysGluThrMetLeu 31136 : AAATCCTTCTACGACGATTGGAAAACCTCAAGGACcaaggaggagaaggagacCATGTTG : 31195 117 : ThrTrpAla<->PheArgAlaArgIleIleIleThrCysAlaTyrValSerLeuGlyVal : 135 ! ! ! ||| ||| ! !!:!||| !||| !|||:!! :!!!!!||| !:!! LysArgAlaLysPheAlaLysGlnIleSerIleTrpCysSerValLeuThrLeuThrMet 31196 : AAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGGTGCTCAGTATTAACCTTGACCATG : 31255 136 : AlaTyrIleIleLeuIleGlyValProIlePheGlyLysSerMetArgLeuThrSerAsn : 155 !.! !:!! !|||! ! ! ! !! .!! ! ! ..!:!: ! !.!!!:!.!. ValThrValTyrLeuSerLeuArgAlaTrpIleIleTyrGlnLeuAspArgAlaAsnGln 31256 : GTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATCTACCAGCTTGATAGGGCAAACCAG : 31315 156 : IleThrAspProGlyArgProMetProLeuGlnThrTyrTyrIleTyrAspIleThrLys : 175 ! ! !||| |||! !:!:! !! !! !|||!:! !!:!|||||| ! ! LysGlnAsp------ArgLeuLeuLeuTyrProGlyTyrPheProPheAspIleArgPro 31316 : AAACAGGAT------CGTCTGCTCCTGTACCCTGGCTATTTTCCCTTCGATATTCGTCCA : 31369 176 : ArgProGlnPheGluLeuThrPheLeuSerGlnIleIleSerCysIlePheAlaLeuIle : 195 ! ! ! !.!. !! !||| !!!!.!!|||:!::!!:!!... !! !|||:!!||| IleGlyValLeuLeuSerThrAsnPheGlyGlnValLeuAlaAlaTyrSerAlaValIle 31370 : ATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCAGCGTATTCCGCTGTTATC : 31429 196 : ProTyrThrAlaIleAspAsnPheLeuGlyLeuLeuThrPheHisIleCysGlyGlnLeu : 215 !||||||.!!:!:|||!..|||:!!!.!:!!|||! !.!.|||||||||||||||!!! SerTyrThrThrValAspThrPheIleAlaMetLeuIleMetHisIleCysGlyGlnPhe 31430 : AGTTACACCACCGTGGATACATTTATCGCGATGCTGATAATGCACATATGCGGACAATTT : 31489 216 : IleIleLeuLysAsnArgLeu : 222 ||||||!:!.!.!:!||| GluIleLeuArgGlnLysLeu 31490 : GAGATACTGAGACAGAAATTA : 31512 vulgar: CbirOr66NTE 8 222 . KQ414804.1 30809 31512 + 147 M 20 60 G 2 0 M 40 120 G 0 3 M 20 60 S 0 1 5 0 2 I 0 63 3 0 2 S 1 2 M 28 84 G 0 3 M 39 117 G 2 0 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 30810 31512 147 + . gene_id 2 ; sequence CbirOr66NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 30810 31053 . + . KQ414804.1 exonerate:protein2genome:local exon 30810 31053 . + . insertions 3 ; deletions 2 KQ414804.1 exonerate:protein2genome:local splice5 31054 31055 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 31054 31120 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 31119 31120 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 31121 31512 . + . KQ414804.1 exonerate:protein2genome:local exon 31121 31512 . + . insertions 3 ; deletions 2 KQ414804.1 exonerate:protein2genome:local similarity 30810 31512 147 + . alignment_id 2 ; Query CbirOr66NTE ; Align 30810 9 60 ; Align 30870 31 120 ; Align 30993 71 60 ; Align 31123 92 84 ; Align 31210 120 117 ; Align 31327 161 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr66NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 159 -> 220 Target range: 44865 -> 45048 160 : GlyArgProMetProLeuGlnThrTyrTyrIleTyrAspIleThrLysArgProGlnPhe : 179 |||! ! !:!:! !!!!!::.!!|||!:! !||||||! ! ! !!!|||.!.!:! GlyThrArgLeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyr 44866 : GGCACCAGACTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTAC : 44923 180 : GluLeuThrPheLeuSerGlnIleIleSerCysIlePheAlaLeuIleProTyrThrAla : 199 |||!!!||| ! :!!:!!|||||||||:!!..!.!!!:!||| !! ! !!||||||||| GluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAla 44924 : GAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCC : 44983 200 : IleAspAsnPheLeuGlyLeuLeuThrPheHisIleCysGlyGlnLeuIleIleLeuLys : 219 :!!|||!.!|||:!!! !:!!|||! !.!.|||:!!|||||||||||| ! !|||!:! ValAspThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArg 44984 : GTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGA : 45043 220 : Asn : 220 ||| Asn 45044 : AAC : 45048 vulgar: CbirOr66NTE 159 220 . KQ414804.1 44865 45048 + 134 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44866 45048 134 + . gene_id 3 ; sequence CbirOr66NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44866 45048 . + . KQ414804.1 exonerate:protein2genome:local exon 44866 45048 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44866 45048 134 + . alignment_id 3 ; Query CbirOr66NTE ; Align 44866 160 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr74CTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 102 -> 241 Target range: 31113 -> 31527 103 : LysGluAlaValThrSerLeuLeuAsnMetValAlaGluAspTrpLeuLysIleLysSer : 122 ...:::||| !!! ! !!:!!:!!!!. !! !!!:|||||| !! !!:!!!: AsnLysAlaPheLysProValIleLysSerPheTyrAspAspTrpLysThrSerArgThr 31114 : aacaaagcttTCAAGCCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACc : 31171 123 : AlaGlnGluArgSerLysMetIleGlyLysAlaGlnThrAlaArgIleIleIleThrCys : 142 :::|||:::... |||:!: !!:!|||:!! !|||!:! !|||:!! ! LysGluGluLysGluThrMetLeuLysArgAlaLysPheAlaLys---GlnIleSerIle 31172 : aaggaggagaaggagacCATGTTGAAGAGAGCCAAATTTGCGAAA---CAAATTTCCATC : 31228 143 : AlaTyrGlyAlaMetMetIleAlaPheIlePheThrGlyIleLeuProIlePheGlyIle : 162 !! !..!!.!:!:! :!:.!!.!.:!! !..! !:!! !! ! ! !!||| TrpCysSerValLeuThrLeuThrMetValThrValTyrLeuSerLeuArgAlaTrpIle 31229 : TGGTGCTCAGTATTAACCTTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATC : 31288 163 : SerAlaArgTyrLeuThrAsnThrSerAspProAspLysLeuLeuProPheGlnThrTyr : 182 ! ! !!:! ! !! ! !.!..! ! ! !|||:::||||||! !!:!! !||| IleTyrGlnLeuAspArgAlaAsnGlnLysGlnAspArgLeuLeuLeuTyrProGlyTyr 31289 : ATCTACCAGCTTGATAGGGCAAACCAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTAT : 31348 183 : TyrLeuTyrAspValThrLysArgProGlnTyrGluPheThrPheIleValGlnIleLeu : 202 !:!! !!:!|||:!! ! !! ! ! ! !! ||| !.!!! !|||:!:||| PheProPheAspIleArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeu 31349 : TTTCCCTTCGATATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTC : 31408 203 : CysMetValPheGlyValMetSerTyrThrGlyIleAspAsnLeuLeuGlyLeuLeuVal : 222 ... ! !! !!.!|||!!:||||||||| !:!:|||!..!!!:!!!.!:!!|||:!! AlaAlaTyrSerAlaValIleSerTyrThrThrValAspThrPheIleAlaMetLeuIle 31409 : GCAGCGTATTCCGCTGTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATA : 31468 223 : PheHisIleSerGlyGlnPheAspIleLeuArgAsnArgIleMetHisMetAsnAsp : 241 .!.||||||!!!|||||||||!!:|||||||||.!.!:!:!! ...:!!! ||| MetHisIleCysGlyGlnPheGluIleLeuArgGlnLysLeuArgArgLeuMetAsp 31469 : ATGCACATATGCGGACAATTTGAGATACTGAGACAGAAATTACGAAGGCTGATGGAT : 31527 vulgar: CbirOr74CTE 102 241 . KQ414804.1 31113 31527 + 116 M 35 105 G 1 0 M 103 309 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31114 31527 116 + . gene_id 1 ; sequence CbirOr74CTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31114 31527 . + . KQ414804.1 exonerate:protein2genome:local exon 31114 31527 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 31114 31527 116 + . alignment_id 1 ; Query CbirOr74CTE ; Align 31114 103 105 ; Align 31219 139 309 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr74CTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 331 -> 384 Target range: 34375 -> 34534 332 : ValAlaGlnCysGluHisIleHisTyrThrValTyrAsnTyrLysTrpTyrThrLeuAsp : 351 :!! !||| !!..!.!.!!: ! !!:!!!.!|||.!.! !!.||||||!.!:!!... IlePheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSer 34376 : ATATTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCA : 34433 352 : ProArgAsnValLysValLeuLeuPheLeuMetValArgSerSerLysProThrTyrLeu : 371 |||! !.!.!.!||| !|||||||||:!!||| !|||!!!:!!:::||| !! !||| ProProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeu 34434 : CCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTG : 34493 372 : ThrAlaGlyLysIlePheProMetThrMetSerThrPhe : 384 ||||||||||||.!! ! !!.!.:!!|||..!! !||| ThrAlaGlyLysPheSerThrPheSerMetGluMetPhe 34494 : ACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTC : 34534 vulgar: CbirOr74CTE 331 384 . KQ414804.1 34375 34534 + 100 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34376 34534 100 + . gene_id 2 ; sequence CbirOr74CTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 34376 34534 . + . KQ414804.1 exonerate:protein2genome:local exon 34376 34534 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34376 34534 100 + . alignment_id 2 ; Query CbirOr74CTE ; Align 34376 332 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr67NC Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 161 -> 229 Target range: 44874 -> 45078 162 : LeuProLeuGlnGlyPhePheIleTyrAspAlaThrLysThrProLeuTyrIleLeuThr : 181 |||! !!!!!::!.!!:!||| !||||||::! ! !:!||| !||| !!!!||| LeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThr 44875 : CTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACA : 44932 182 : TyrIleAlaGlnValIleThrPhePhePheAlaValMetAlaTyrThrGlyIleAspAsn : 201 |||||||||:!!|||.!! !|||!:!|||!.!! .!!||||||!.!:!!|||!.! ValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThr 44933 : GTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACT : 44992 202 : PheLeuGlyLeuLeuValPheHisIleCysGlyGlnMetGluIleLeuMetAlaArgPhe : 221 |||:!!! !:!!|||:!!.!.|||:!!|||||||||:!:..!! !|||! !..!||| PheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArgAsnGluPhe 44993 : TTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGAAACGAATTC : 45052 222 : SerCysLeuSerLysLeuThrLys : 229 .!! |||..! !! ! !||| GlyLysLeuGlnAlaCysAspLys 45053 : GGTAAGCTTCAAGCATGCGATAAA : 45078 vulgar: CbirOr67NC 161 229 . KQ414804.1 44874 45078 + 137 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44875 45078 137 + . gene_id 1 ; sequence CbirOr67NC ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44875 45078 . + . KQ414804.1 exonerate:protein2genome:local exon 44875 45078 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44875 45078 137 + . alignment_id 1 ; Query CbirOr67NC ; Align 44875 162 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr67NC Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 89 -> 228 Target range: 36557 -> 36965 90 : AlaValIleSerIleMetAsnMetIleValGluAspTrpLeuAsnSerLysAsnIleGln : 109 |||:!!:!!! !:!!|||!:!...||| !!!!:|||||| !.!. !!! ! AlaLeuValPheLeuMetSerGlnIlePheAspAspTrpAlaGluProIleProGluVal 36558 : GCGCTAGTATTCTTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTG : 36615 110 : GluLysAsnIleMetIleThrTrpAlaGlnLysProArgLysIleIleMetIleAlaTyr : 129 !!:::::!!! |||:!:! ! ||| ||| !!!!::!!!:||| |||!.!! ! AspArgHisThrMetLeuLysThrAla---LysIleSerArgMetIleSerIleValCys 36616 : GATCGCCACACGATGCTGAAGACCGCG---AAAATTAGTCGAATGATATCCATAGTCTGT : 36672 130 : SerIleMetGlyIleSerTyrAlaCysValValValLeuProAlaLeuGlyIleSerVal : 149 |||||| :!:!!!|||!.! |||:!!!.!!!! !:!!||| !|||!!! ! SerIle------LeuThrTyrValMetValLeuAlaPheLeuSerLeuGlnIleTrpSer 36673 : TCTATC------CTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGC : 36726 150 : ThrTyrThrArgAsnAlaThrAspIleAsnLysIleLeuProLeuGlnGlyPhePheIle : 169 !:! !!.!!.!:!! ! !! ! ! !|||! !:!!! !!.! ||| ! SerMetGlnAsnThrSerGluPheAsnValGlyGlyLeuLeuIleProAlaThrPhePro 36727 : AGCATGCAAAACACCTCGGAGTTCAACGTAGGAGGACTACTTATCCCGGCCACATTTCCA : 36786 170 : TyrAspAlaThrLysThrProLeuTyrIleLeuThrTyrIleAlaGlnValIleThrPhe : 189 ||||||.!!!.!|||!:!||| !||| !:!!|||!:::!!!.!||| !!:!: ! TyrAspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThr 36787 : TACGACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACA : 36846 190 : PhePheAlaValMetAlaTyrThrGlyIleAspAsnPheLeuGlyLeuLeuValPheHis : 209 ! !!.::!!.!!!:..!|||:!! !!.!!|||!..|||:!!!.!:!!||||||!!.||| ValLeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHis 36847 : GTGTTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACAC : 36906 210 : IleCysGlyGlnMetGluIleLeuMetAlaArgPheSerCysLeuSerLysLeuThr : 228 ||||||||||||:!: :!!||| ! !.!!..! !|||:!!!!. !||| IleCysGlyGlnLeuThrValLeuArgIleAlaLeuGluAsnLeuAlaAsnThrThr 36907 : ATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTCGAGAATCTTGCTAACACGACA : 36965 vulgar: CbirOr67NC 89 228 . KQ414804.1 36557 36965 + 121 M 29 87 G 1 0 M 12 36 G 2 0 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36558 36965 121 + . gene_id 2 ; sequence CbirOr67NC ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36558 36965 . + . KQ414804.1 exonerate:protein2genome:local exon 36558 36965 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 36558 36965 121 + . alignment_id 2 ; Query CbirOr67NC ; Align 36558 90 87 ; Align 36645 120 36 ; Align 36681 134 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr86NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 80 -> 225 Target range: 36527 -> 36953 81 : LysLeuPheIleIleArgGlnLysLysTyrAspIleLeuLeuValLeuAsnMetIleLys : 100 ||||||...... ...! !... ! :!!:!!!!!:!!:!!!:!...||| LysLeuIlePheThrIleHisThrSerLeuAlaLeuValPheLeuMetSerGlnIlePhe 36528 : AAACtgattttcacaattcacACGTCTCTAGCGCTAGTATTCTTAATGAGCCAAATATTC : 36585 101 : AsnAspTrpLeuLysProMetThrSerGluGluArgAsnValMetIleLysGlnAlaArg : 120 :!!|||||| !:!!|||!!: !!..!! !!!:|||:!!..!|||:!:||| |||!:! AspAspTrpAlaGluProIleProGluValAspArgHisThrMetLeuLysThrAlaLys 36586 : GACGACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACGATGCTGAAGACCGCGAAA : 36645 121 : IleAlaArgIleLeuThrLeuLeuSerCysLeuValValGluMetPheAlaIleIleThr : 140 |||::!|||!!::!!:!!:!!:!!!!!! !:!!:!!..! !:!!.!!!::!! ! IleSerArgMetIleSerIleValCysSerIleLeuThr------TyrValMetValLeu 36646 : ATTAGTCGAATGATATCCATAGTCTGTTCTATCCTGACG------TATGTCATGGTTTTG : 36699 141 : SerIleLeuProIlePheGlyIleSerMetArgTyrArgThrAsnArgThrAspProGly : 160 :!!.!!||| !!:!! ! |||! ! ! ! !.!|||:::..! !:!! !||| AlaPheLeuSerLeuGlnIleTrpSerSerMetGlnAsnThrSerGluPheAsnValGly 36700 : GCCTTCTTGTCACTTCAAATTTGGAGCAGCATGCAAAACACCTCGGAGTTCAACGTAGGA : 36759 161 : LysIleLeuProLeuGlnThrTyrTyrLeuTyrAspValAsnAsnSerProLeuTyrGlu : 180 !:!!||| :!!! !.!! !:!! !||||||..!|||!!.|||||| !|||||| GlyLeuLeu---IleProAlaThrPheProTyrAspThrAsnLysSerProAsnTyrGlu 36760 : GGACTACTT---ATCCCGGCCACATTTCCATACGACACGAATAAAAGTCCTAATTACGAA : 36816 181 : LeuThrPheValLeuGlnSerLeuSerMetIleValValAlaThrIleTyrThrGlyPro : 200 :!!|||!:::!! !|||! !:!!.!!! :!::!! !|||! ! !|||:!! !! ! IleThrTrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSerCysPhe 36817 : ATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTC : 36876 201 : AspThrPheMetSerLeuLeuValPheHisIleCysGlyGlnLeuLysAsnLeuLysAla : 220 |||||||||:!::!!:!!||||||!!.||||||||||||||||||! !|||::: ! AspThrPheValAlaValLeuValLeuHisIleCysGlyGlnLeuThrValLeuArgIle 36877 : GATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACTGTTCTCCGCATT : 36936 221 : ArgIleArgAsnLeu : 225 !:!!..!|||||| AlaLeuGluAsnLeu 36937 : GCCCTCGAGAATCTT : 36953 vulgar: CbirOr86NTE 80 225 . KQ414804.1 36527 36953 + 174 M 53 159 G 2 0 M 28 84 G 1 0 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36528 36953 174 + . gene_id 1 ; sequence CbirOr86NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36528 36953 . + . KQ414804.1 exonerate:protein2genome:local exon 36528 36953 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 36528 36953 174 + . alignment_id 1 ; Query CbirOr86NTE ; Align 36528 81 159 ; Align 36687 136 84 ; Align 36771 165 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr86NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 136 -> 219 Target range: 44799 -> 45045 137 : AlaIleIleThrSerIleLeuProIlePheGlyIleSerMetArgTyrArgThrAsnArg : 156 .!!:!::!! ! !|||:!! !||| ! !|||! !:!:|||!:!! !|||!..!:! ThrValLeuCysHisIleValValIleThrTyrIlePheLeuArgPheLeuThrArgLys 44800 : ACAGTGTTATGTCACATTGTGGTCATCACTTATATATTTCTACGATTCCTCACCAGGAAG : 44857 157 : ThrAspProGlyLysIleLeuProLeuGlnThrTyrTyrLeuTyrAspValAsnAsnSer : 176 !..! ! !!:!:!!||| !!!!::.!!|||!:!! !|||||| !:!! !||| TyrSerGlyThrArgLeuLeu---PheArgAlaTyrPheProTyrAspSerAspValSer 44858 : TACAGCGGCACCAGACTACTC---TTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGT : 44914 177 : ProLeuTyrGluLeuThrPheValLeuGlnSerLeuSerMetIleValValAlaThrIle : 196 ||| !||||||!!!||| ! :!! !|||! !:!!:!! .!! !!.!||||||! ! ProAsnTyrGluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThr 44915 : CCAAATTACGAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACA : 44974 197 : TyrThrGlyProAspThrPheMetSerLeuLeuValPheHisIleCysGlyGlnLeuLys : 216 ||||||!.! !|||||||||!!: !:!!|||:!!.!.|||:!!||||||||||||..! TyrThrAlaValAspThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeuSer 44975 : TACACAGCCGTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCG : 45034 217 : AsnLeuLys : 219 ||||||!:! AsnLeuArg 45035 : AATTTGAGA : 45045 vulgar: CbirOr86NTE 136 219 . KQ414804.1 44799 45045 + 143 M 27 81 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44800 45045 143 + . gene_id 2 ; sequence CbirOr86NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44800 45045 . + . KQ414804.1 exonerate:protein2genome:local exon 44800 45045 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 44800 45045 143 + . alignment_id 2 ; Query CbirOr86NTE ; Align 44800 137 81 ; Align 44881 165 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr86NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 94 -> 225 Target range: 31131 -> 31521 95 : ValLeuAsnMetIleLysAsnAspTrpLeuLysProMetThrSerGluGluArgAsnVal : 114 |||:!!!!. .!! ! :!!|||||| !! !!! !|||...||||||:::.....! ValIleLysSerPheTyrAspAspTrpLysThrSerArgThrLysGluGluLysGluThr 31132 : GTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACcaaggaggagaaggagacC : 31189 115 : MetIleLysGlnAlaArgIleAlaArgIleLeuThrLeuLeuSerCysLeuValValGlu : 134 |||:!:|||::!|||!:!.!!|||!:! !:!!:!!:!!! !!!!! :!!:!!..! ! MetLeuLysArgAlaLysPheAlaLysGlnIleSerIleTrpCysSerValLeuThrLeu 31190 : ATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGGTGCTCAGTATTAACCTTG : 31249 135 : MetPheAlaIleIleThrSerIleLeuProIlePheGlyIleSerMetArgTyrArgThr : 154 ! .!.!.!! !:!! ! !! !|||! ! !:: !|||! !..!! ! !!|||.!! ThrMetValThrValTyrLeuSerLeuArgAlaTrpIleIleTyrGlnLeuAspArgAla 31250 : ACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATCTACCAGCTTGATAGGGCA : 31309 155 : AsnArgThrAspProGlyLysIleLeuProLeuGlnThrTyrTyrLeuTyrAspValAsn : 174 |||!:!! !.!. ! !::::!:|||! !! !! !|||!:!! !!:!|||:!!..! AsnGlnLysGln---AspArgLeuLeuLeuTyrProGlyTyrPheProPheAspIleArg 31310 : AACCAGAAACAG---GATCGTCTGCTCCTGTACCCTGGCTATTTTCCCTTCGATATTCGT : 31366 175 : AsnSerProLeuTyrGluLeuThrPheValLeuGlnSerLeuSerMetIleValValAla : 194 ! ! !:!! !! !||| ! !! !||| !|||:!! ! ! !!.!!.! ProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeuAlaAlaTyrSerAlaVal 31367 : CCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCAGCGTATTCCGCTGTT : 31426 195 : ThrIleTyrThrGlyProAspThrPheMetSerLeuLeuValPheHisIleCysGlyGln : 214 ! !! !|||||| ! !|||||||||!!::!!:!!|||:!!.!.||||||||||||||| IleSerTyrThrThrValAspThrPheIleAlaMetLeuIleMetHisIleCysGlyGln 31427 : ATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATAATGCACATATGCGGACAA : 31486 215 : LeuLysAsnLeuLysAlaArgIleArgAsnLeu : 225 !!!:!!! |||!:! !!:!:!!|||!..||| PheGluIleLeuArgGlnLysLeuArgArgLeu 31487 : TTTGAGATACTGAGACAGAAATTACGAAGGCTG : 31521 vulgar: CbirOr86NTE 94 225 . KQ414804.1 31131 31521 + 128 M 64 192 G 1 0 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31132 31521 128 + . gene_id 3 ; sequence CbirOr86NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31132 31521 . + . KQ414804.1 exonerate:protein2genome:local exon 31132 31521 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 31132 31521 128 + . alignment_id 3 ; Query CbirOr86NTE ; Align 31132 95 192 ; Align 31324 160 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr86NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 317 -> 385 Target range: 34375 -> 34662 318 : ValIleGlnSerGluGlyIleTyrGluAlaValCysGlnTyrGluTrpTyrLysLeuLys : 337 :!!.!!||||||..!! !!!: !.!.:!!!.!! !:!!! .!.||||||!!.:!!..! IlePheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSer 34376 : ATATTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCA : 34433 338 : ProTrpGlnAlaLysAspPheLeuAsnIleMetIleGlnAlaArgArgProLeuTyrLeu : 357 ||| :!!|||||| !.!!||| !|||||| !::!.!! !|||||||||! !||| ProProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeu 34434 : CCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTG : 34493 358 : ThrAlaGlyLysLeuPheProMetThrIleAlaThrLeuCysAsn >>>> Target I : 373 ||||||||||||!!! ! !!.!.:!!!!:! !! !!!! !!!.! 83 ThrAlaGlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34494 : ACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt............. : 34543 374 : ntron 1 >>>> LeuLeuLysThrSerGlyGlyTyrIleSerValLeuLeu : 385 bp :::|||||||||:!! !||||||:!!|||||||||||| ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeu 34544 : ............agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTC : 34662 vulgar: CbirOr86NTE 317 385 . KQ414804.1 34375 34662 + 109 M 55 165 5 0 2 I 0 79 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34376 34662 109 + . gene_id 4 ; sequence CbirOr86NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34376 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34376 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34662 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34662 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34376 34662 109 + . alignment_id 4 ; Query CbirOr86NTE ; Align 34376 318 165 ; Align 34624 373 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr71PN Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 160 -> 221 Target range: 44871 -> 45054 161 : ArgPheProLeuArgValTyrTyrPhePheAspValThrSerArgProGlnTyrGluLeu : 180 |||.!.! !!!!|||!.!|||!:! !!:!||| ! ! !!!!|||.!.||||||!!! ArgLeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPhe 44872 : AGACTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTT : 44929 181 : ThrTyrIleSerLeuSerIleGlyLeuPhePheAlaAlaValThrTyrThrGlyIleAsp : 200 ||| |||:!!! !! !|||!.! !|||!:!||||||..!|||||||||!.!:!!||| ThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAsp 44930 : ACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGAT : 44989 201 : AsnPheLeuGlyLeuLeuValPheHisThrCysSerGlnLeuAspIleLeuSerThrArg : 220 !.!|||:!!! !:!!|||:!!.!.|||..!|||.!!||||||...! !|||!!!!.!..! ThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArgAsnGlu 44990 : ACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGAAACGAA : 45049 221 : Phe : 221 ||| Phe 45050 : TTC : 45054 vulgar: CbirOr71PN 160 221 . KQ414804.1 44871 45054 + 132 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44872 45054 132 + . gene_id 1 ; sequence CbirOr71PN ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44872 45054 . + . KQ414804.1 exonerate:protein2genome:local exon 44872 45054 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44872 45054 132 + . alignment_id 1 ; Query CbirOr71PN ; Align 44872 161 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr57NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 323 -> 379 Target range: 51900 -> 52319 324 : IleTyrTyrAlaValTyrAspTyrAlaTrpTyrLeuLeuLysProLysGluAlaArgSer : 343 ||| ! !!|||!.!||||||! !! !|||||| !|||...||||||.!.|||!:!! ! IleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLysAsnAlaLysLeu 51901 : ATAGCTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTG : 51958 344 : LeuMetLeuIleMetIleArgAlaAspLysProLeuTyrIleThrAlaGlyArgIlePhe : 363 |||:!::!!|||||| !|||||| !|||||| ! |||||||||||||||.!! ! LeuLeuIleIleMetArgArgAlaArgLeuProLeuGlnIleThrAlaGlyArgPheAla 51959 : CTACTAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCAGGTAGATTTGCT : 52018 364 : ProMetThrLeuSerMetPheCysSer >>>> Target Intron 1 >>>> IleI : 374 !!.!.||||||! !:!!!:!! ..! 251 bp |||: ThrPheThrLeuMetLeuTyrSerGln++ ++IleL 52019 : ACTTTCACTCTGATGCTGTATTCACAGgt.........................agATTT : 52302 375 : leLysThrSerAlaGly : 379 !!|||||||||!.!||| euLysThrSerValGly 52303 : TAAAAACCTCGGTGGGA : 52319 vulgar: CbirOr57NTE 323 379 . KQ414804.1 51900 52319 + 134 M 49 147 5 0 2 I 0 247 3 0 2 M 7 21 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51901 52319 134 + . gene_id 1 ; sequence CbirOr57NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51901 52047 . + . KQ414804.1 exonerate:protein2genome:local exon 51901 52047 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 52048 52049 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 52048 52298 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 52297 52298 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 52299 52319 . + . KQ414804.1 exonerate:protein2genome:local exon 52299 52319 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51901 52319 134 + . alignment_id 1 ; Query CbirOr57NTE ; Align 51901 324 147 ; Align 52299 373 21 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr57NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 0 -> 89 Target range: 35906 -> 36176 1 : LeuGluTrpAlaIleGlyIleAsnArgPheThrLeuLysIleLeuGlyLeuTrpProAsp : 20 :!!!!:!::|||!!:||| |||||||||!:!|||...:!!||||||:!!||||||!!: MetAspPheAlaMetGlyTrpAsnArgPheSerLeuSerValLeuGlyValTrpProGlu 35907 : ATGGATTTTGCTATGGGATGGAATCGTTTCAGTTTATCTGTACTTGGCGTGTGGCCAGAA : 35964 21 : GluArg<->LeuAsnArgGlnGlnArgPheLeuAlaAsnLeuArgAlaPheIleIlePhe : 39 !||| :!!::!!.!! !..!|||||| !:!!|||!!!! ! !!::.!!! ! ProArgLysMetSerAsnLeuSerArgPheAlaSerAsnPheIlePheTrpPheThrThr 35965 : CCGAGAAAGATGTCTAACCTGTCACGATTCGCGTCTAACTTTATATTCTGGTTCACGACT : 36024 40 : ThrThrMetIleLeuValSerValIleProAlaTyrIleSerLeuMetArgValTrpGly : 59 !! !! !:!!:!! !!! ! ! !||| ! ! !|||:!: LeuIleThrValValPheIleCysAlaProGlnMetThrHisLeuValLeuLysSerThr 36025 : TTGATAACGGTTGTCTTCATATGCGCTCCCCAAATGACGCATTTGGTAttaaaatcgacg : 36084 60 : AspMetMetAlaIleIleAspAsnLeuGlnValThrLeuProCysSerIleAlaAlaLeu : 79 :::::: ! !:!:|||!!:||||||..!|||!.!:!!||| !.!!:!! ! ! AsnLeuAspGluValIleGluAsnLeuSerValAsnIleProMetLeuPheSerLeuGly 36085 : aatttgGACGAGGTGATAGAGAATCTGTCGGTCAACATACCGATGCTCTTCTCATTGGGC : 36144 80 : LysIleIleIleMetTrpSerArgLysGlu : 89 ||| !||||||:!! ! ! !|||!:!:!! LysGlnIleIleLeuArgTyrArgArgLys 36145 : AAGCAAATCATTCTGCGTTATCGTAGAAAA : 36176 vulgar: CbirOr57NTE 0 89 . KQ414804.1 35906 36176 + 100 M 22 66 G 0 3 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 35907 36176 100 + . gene_id 2 ; sequence CbirOr57NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 35907 36176 . + . KQ414804.1 exonerate:protein2genome:local exon 35907 36176 . + . insertions 3 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 35907 36176 100 + . alignment_id 2 ; Query CbirOr57NTE ; Align 35907 1 66 ; Align 35976 23 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr61NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 199 Query range: 1 -> 215 Target range: 35906 -> 36923 2 : PheGluTrpAlaValGlnLeuAsnArgPheSerLeuLysLeuLeuGlyLeuTrpProGlu : 21 .!.!!:!::|||:!! !! !|||||||||||||||...:!!||||||:!!||||||||| MetAspPheAlaMetGlyTrpAsnArgPheSerLeuSerValLeuGlyValTrpProGlu 35907 : ATGGATTTTGCTATGGGATGGAATCGTTTCAGTTTATCTGTACTTGGCGTGTGGCCAGAA : 35964 22 : <->GluAlaAlaSerLeuGlnAspArgLeuAsnSerAsn<->LeuArgLeuPheGlyVal : 39 ..! ! !||| !! !...|||!!! |||||| :!! !! !||| !..! ProArgLysMetSerAsnLeuSerArgPheAlaSerAsnPheIlePheTrpPheThrThr 35965 : CCGAGAAAGATGTCTAACCTGTCACGATTCGCGTCTAACTTTATATTCTGGTTCACGACT : 36024 40 : PheIleLeuIleAsnGlyValCysThrValProSerLeuHisLeuLeuLeuLysIleTrp : 59 !!.||| !:!! ! !:!!|||.!! !! !! ! !||||||:!!|||||| LeuIleThrValValPheIleCysAlaProGlnMetThrHisLeuValLeuLysSer--- 36025 : TTGATAACGGTTGTCTTCATATGCGCTCCCCAAATGACGCATTTGGTAttaaaatcg--- : 36084 60 : GlyAspIleAsnAlaMetMetAspAsnPheValPheThrLeuProLeuLeuThrValSer : 79 :::::::!!! !:!!!!:!!:|||.!. ! !!!.!:!!|||:!!||| ! !! ! ThrAsnLeuAspGluValIleGluAsnLeuSerValAsnIleProMetLeuPheSerLeu 36085 : acgaatttgGACGAGGTGATAGAGAATCTGTCGGTCAACATACCGATGCTCTTCTCATTG : 36141 80 : ValLysLeuLeuIleLeuTrpTrpLysArgGlu{A} >>>> Target Intron 1 > : 91 ! !|||! !:!!|||||| ! !:::::|||:!!{|} 381 bp GlyLysGlnIleIleLeuArgTyrArgArgLys{A}++ 36142 : GGCAAGCAAATCATTCTGCGTTATCGTAGAAAA{G}gt...................... : 36180 92 : >>> {la}LeuSerSerLeuMetThrMetIleAlaHisAspTrpIleLysSerLysSer : 108 {||}||| !! !||||||!:!...||| ! !!|||||| :!! !!! !! ++{la}LeuValPheLeuMetSerGlnIlePheAspAspTrpAlaGluProIlePro 36181 : ...ag{CG}CTAGTATTCTTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCG : 36609 109 : LysAspGluArgAsnValMetIleArgCysAlaGlnAsnAlaArgLeuIleIleThrPhe : 128 :!!! !!:|||:!!..!|||:!:!:! !|||:!!! !::!|||:!!||| !! ! !! GluValAspArgHisThrMetLeuLysThrAlaLysIleSerArgMetIleSerIleVal 36610 : GAGGTGGATCGCCACACGATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTC : 36669 129 : SerTyrIleValIlePheCysSerLeuIleIleLeuIleIleSerThrAlaPheGlyTyr : 148 !!!! !|||:!!! !:! ! :!!:!!:!: !.!!:!:||| ! !.!! !! ! CysSerIleLeuThrTyrVal---MetValLeuAlaPheLeuSerLeuGlnIleTrpSer 36670 : TGTTCTATCCTGACGTATGTC---ATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGC : 36726 149 : ThrValThrHisValThrAsnIleThrAspThrLysLysProLeuProLeuGlnGlyTyr : 168 !:!:!! !:!!..!:!!.!..!!!.!! ! ! !! !:!!||| !.! SerMetGlnAsnThrSerGluPheAsnValGlyGlyLeuLeuIlePro------AlaThr 36727 : AGCATGCAAAACACCTCGGAGTTCAACGTAGGAGGACTACTTATCCCG------GCCACA : 36780 169 : TyrIleTyrAsnThrSerValSerProGlnPheGluLeuThrPhePheGlyGlnCysIle : 188 !:! !|||:!!|||!:! !||||||.!.!:!|||:!!|||!::.!!||||||! !:!: PheProTyrAspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheVal 36781 : TTTCCATACGACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTG : 36840 189 : SerLeuThrMetValAlaLeuSerTyrThrSerThrAspAsnPheLeuGlyLeuLeuVal : 208 .!! !..!:!! !|||:!!!!!|||:!!!!! !|||!..|||:!!!.!:!!|||||| GlyThrValLeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuVal 36841 : GGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTG : 36900 209 : PheHisIleCysGlyGlnLeu : 215 !!.|||||||||||||||||| LeuHisIleCysGlyGlnLeu 36901 : TTACACATATGCGGCCAATTA : 36923 vulgar: CbirOr61NTE 1 215 . KQ414804.1 35906 36923 + 199 M 20 60 G 0 3 M 12 36 G 0 3 M 25 75 G 1 0 M 31 93 S 0 1 5 0 2 I 0 377 3 0 2 S 1 2 M 44 132 G 1 0 M 28 84 G 2 0 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 35907 36923 199 + . gene_id 1 ; sequence CbirOr61NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 35907 36177 . + . KQ414804.1 exonerate:protein2genome:local exon 35907 36177 . + . insertions 6 ; deletions 1 KQ414804.1 exonerate:protein2genome:local splice5 36178 36179 . + . intron_id 1 ; splice_site "gt" KQ414804.1 exonerate:protein2genome:local intron 36178 36558 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 36557 36558 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 36559 36923 . + . KQ414804.1 exonerate:protein2genome:local exon 36559 36923 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 35907 36923 199 + . alignment_id 1 ; Query CbirOr61NTE ; Align 35907 2 60 ; Align 35970 22 36 ; Align 36009 34 75 ; Align 36084 60 93 ; Align 36561 92 132 ; Align 36693 137 84 ; Align 36777 167 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr61NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 162 -> 226 Target range: 44874 -> 45066 163 : LeuProLeuGlnGlyTyrTyrIleTyrAsnThrSerValSerProGlnPheGluLeuThr : 182 |||! !!!!!::!.!|||!:! !|||:!!!:!..!|||||||||.!.!:!|||!!!||| LeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThr 44875 : CTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACA : 44932 183 : PhePheGlyGlnCysIleSerLeuThrMetValAlaLeuSerTyrThrSerThrAspAsn : 202 ! .!!!.!||| !|||:!! ! ! !.!||| !!!!||||||:!!..!|||!.! ValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThr 44933 : GTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACT : 44992 203 : PheLeuGlyLeuLeuValPheHisIleCysGlyGlnLeuGluAsnLeuThrSerArgLeu : 222 |||:!!! !:!!|||:!!.!.|||:!!||||||||||||..!||||||! !!:!..!!!! PheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArgAsnGluPhe 44993 : TTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGAAACGAATTC : 45052 223 : TyrGlnMetArg : 226 !:!!:!:!:! GlyLysLeuGln 45053 : GGTAAGCTTCAA : 45066 vulgar: CbirOr61NTE 162 226 . KQ414804.1 44874 45066 + 133 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44875 45066 133 + . gene_id 2 ; sequence CbirOr61NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44875 45066 . + . KQ414804.1 exonerate:protein2genome:local exon 44875 45066 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44875 45066 133 + . alignment_id 2 ; Query CbirOr61NTE ; Align 44875 163 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr61NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 88 -> 229 Target range: 31113 -> 31533 89 : ArgGluAlaLeuSerSerLeuMetThrMetIleAlaHisAspTrpIleLysSerLysSer : 108 ...:::|||.!!!.! !!:!!!!:! ! .!! ! !!||||||! !! |||!:!!!: AsnLysAlaPheLysProValIleLysSerPheTyrAspAspTrpLysThrSerArgThr 31114 : aacaaagcttTCAAGCCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACc : 31171 109 : LysAspGluArgAsnValMetIleArgCysAlaGlnAsnAlaArgLeuIleIleThrPhe : 128 |||:::|||:::.....!|||:!:!:! ! |||:!! !|||!:!! !||| !! !!:: LysGluGluLysGluThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIleTrp 31172 : aaggaggagaaggagacCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGG : 31231 129 : SerTyrIleValIlePheCysSerLeuIleIleLeuIleIleSerThrAlaPheGlyTyr : 148 !!!! :!!:!!! !!!. !! !:!!! !:!!! !:!!! ! ! !|||!:: ! ! CysSerValLeuThrLeuThrMetValThrValTyrLeuSerLeuArgAlaTrpIleIle 31232 : TGCTCAGTATTAACCTTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATC : 31291 149 : ThrValThrHisValThrAsnIleThrAspThrLysLysProLeuProLeuGlnGlyTyr : 168 ! ! ! !! !.!!||| ! ! ! ! :::! !|||! !! !! |||||| TyrGlnLeuAspArgAlaAsn---GlnLysGlnAspArgLeuLeuLeuTyrProGlyTyr 31292 : TACCAGCTTGATAGGGCAAAC---CAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTAT : 31348 169 : TyrIleTyrAsnThrSerValSerProGlnPheGluLeuThrPhePheGlyGlnCysIle : 188 !:! !!:!:!!! ! !! !! ! ! !.!. !! !||| !||||||||| :!! PheProPheAspIleArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeu 31349 : TTTCCCTTCGATATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTC : 31408 189 : SerLeuThrMetValAlaLeuSerTyrThrSerThrAspAsnPheLeuGlyLeuLeuVal : 208 :!! ! ! !.!!.!:!!|||||||||!!!..!|||!..|||:!!!.!:!!|||:!! AlaAlaTyrSerAlaValIleSerTyrThrThrValAspThrPheIleAlaMetLeuIle 31409 : GCAGCGTATTCCGCTGTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATA : 31468 209 : PheHisIleCysGlyGlnLeuGluAsnLeuThrSerArgLeuTyrGlnMetArgGluSer : 228 .!.|||||||||||||||!!!|||! |||! !..!!:!||| ::!:!!! !!!:..! MetHisIleCysGlyGlnPheGluIleLeuArgGlnLysLeuArgArgLeuMetAspAsp 31469 : ATGCACATATGCGGACAATTTGAGATACTGAGACAGAAATTACGAAGGCTGATGGATGAC : 31528 229 : Lys : 229 :!! Glu 31529 : GAG : 31533 vulgar: CbirOr61NTE 88 229 . KQ414804.1 31113 31533 + 126 M 67 201 G 1 0 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31114 31533 126 + . gene_id 3 ; sequence CbirOr61NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31114 31533 . + . KQ414804.1 exonerate:protein2genome:local exon 31114 31533 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 31114 31533 126 + . alignment_id 3 ; Query CbirOr61NTE ; Align 31114 89 201 ; Align 31315 157 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr85PNC Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 167 -> 251 Target range: 44889 -> 45147 168 : TyrValLeuTyrAspValSerAspSerProPheTyrGluValThrPheLeuLeuGlnSer : 187 ||| !!! !|||||| !..!! !|||||| !|||||| !!||| ! :!! !|||! ! TyrPheProTyrAspSerAspValSerProAsnTyrGluPheThrValIleAlaGlnIle 44890 : TATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACAGTGATTGCTCAAATC : 44947 188 : PheGlyValIleAlaAlaAlaThrIleTyrThrAlaThrAspThrPheMetSerLeuLeu : 207 .!.!.!!.!.!! !|||||||||! !|||||||||..!|||||||||!!: !:!!||| IleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThrPheIleValMetLeu 44948 : ATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACTTTCATTGTAATGTTA : 45007 208 : ValPheHisIleCysGlyGlnLeuGluAsnLeuLysThrPheIleLeuAspLeuAspLys : 227 :!!.!.|||:!!||||||||||||..!||||||!:!!.! .!! ! ! |||.!. ! IleLeuHisValCysGlyGlnLeuSerAsnLeuArgAsnGluPheGlyLysLeuGlnAla 45008 : ATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGAAACGAATTCGGTAAGCTTCAAGCA : 45067 228 : PheSerAsnPheThrVal<-><->AlaLeuSerSerSerValGlnAspHisIleArgLeu : 245 ! !..!!!. ! |||:!! !|||.!!!.!! !|||||| ! ||| ! !||| CysAspLysValThrLeuGlnAlaLysLeuGlyLysIleValGlnLysHisGluTyrLeu 45068 : TGCGATAAAGTAACATTACAGGCGAAGTTGGGGAAAATCGTGCAGAAACACGAATATCTT : 45127 246 : IleArgPheIleLysIle : 251 ! !||||||:!!..!:!: AsnArgPheValSerLeu 45128 : AACAGGTTCGTATCATTG : 45147 vulgar: CbirOr85PNC 167 251 . KQ414804.1 44889 45147 + 137 M 66 198 G 0 6 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44890 45147 137 + . gene_id 1 ; sequence CbirOr85PNC ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44890 45147 . + . KQ414804.1 exonerate:protein2genome:local exon 44890 45147 . + . insertions 6 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44890 45147 137 + . alignment_id 1 ; Query CbirOr85PNC ; Align 44890 168 198 ; Align 45094 234 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr85PNC Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 170 -> 225 Target range: 36788 -> 36953 171 : TyrAspValSerAspSerProPheTyrGluValThrPheLeuLeuGlnSerPheGlyVal : 190 ||||||..!!:! ! |||||| !||||||:!!|||!::||| !|||! ! ! |||..! TyrAspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThr 36789 : TACGACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACA : 36846 191 : IleAlaAlaAlaThrIleTyrThrAlaThrAspThrPheMetSerLeuLeuValPheHis : 210 :!: !::!|||! ! !|||:!!..! !|||||||||:!::!!:!!||||||!!.||| ValLeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHis 36847 : GTGTTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACAC : 36906 211 : IleCysGlyGlnLeuGluAsnLeuLysThrPheIleLeuAspLeu : 225 ||||||||||||||| !|||:::! ! !:!! !:!!||| IleCysGlyGlnLeuThrValLeuArgIleAlaLeuGluAsnLeu 36907 : ATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTCGAGAATCTT : 36953 vulgar: CbirOr85PNC 170 225 . KQ414804.1 36788 36953 + 128 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36789 36953 128 + . gene_id 2 ; sequence CbirOr85PNC ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36789 36953 . + . KQ414804.1 exonerate:protein2genome:local exon 36789 36953 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36789 36953 128 + . alignment_id 2 ; Query CbirOr85PNC ; Align 36789 171 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr85PNC Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 92 -> 219 Target range: 31128 -> 31503 93 : ProIleLeuLysMetValLysThrAspTrpLeuLysLeuLysThrGluGluGluArgVal : 112 |||:!!:!!||| !! ! !|||||| !! ! !!:!|||:::||||||::: ProValIleLysSerPheTyrAspAspTrpLysThrSerArgThrLysGluGluLysGlu 31129 : CCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACcaaggaggagaaggag : 31186 113 : ValMetIleLysGlnGlyGlnThrAlaArgAlaIleMetIleTrpAspAlaPheValMet : 132 ..!|||:!:|||::!!.!:!! !|||!:! !||| |||||| !:!! ! :!!! ThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIleTrpCysSerValLeuThr 31187 : acCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGGTGCTCAGTATTAACC : 31246 133 : ValPheSerPheIleLeuValValIleLeuProCysPheGlyIleSerIleArgTyrLeu : 152 :!! !!!::!!..!||| !||| ! ! !.! ! !||| ! ! ||| Leu------ThrMetValThrValTyrLeuSerLeuArgAlaTrpIleIleTyrGlnLeu 31247 : TTG------ACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATCTACCAGCTT : 31300 153 : ThrAsnIleThrAspProArgArgValMetProLeuGlnThrTyrTyrValLeuTyrAsp : 172 !!.. !!.!.!. !!:! ! !:!!! !||| ! !! !||| !!! !!:!||| AspArgAlaAsnGlnLysGlnAspArgLeuLeuLeuTyrProGlyTyrPheProPheAsp 31301 : GATAGGGCAAACCAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTATTTTCCCTTCGAT : 31360 173 : ValSerAspSerProPheTyrGluValThrPheLeuLeuGlnSerPheGlyValIleAla : 192 :!! !! ! ! ! ! ! !||| !!!! !||| !.!!!.!!.! !:!! IleArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeuAlaAlaTyrSer 31361 : ATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCAGCGTATTCC : 31420 193 : AlaAlaThrIleTyrThrAlaThrAspThrPheMetSerLeuLeuValPheHisIleCys : 212 |||!.!! !! !||||||.!!..!|||||||||!!::!!:!!|||:!!.!.||||||||| AlaValIleSerTyrThrThrValAspThrPheIleAlaMetLeuIleMetHisIleCys 31421 : GCTGTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATAATGCACATATGC : 31480 213 : GlyGlnLeuGluAsnLeuLys : 219 ||||||!!!|||! |||!:! GlyGlnPheGluIleLeuArg 31481 : GGACAATTTGAGATACTGAGA : 31503 vulgar: CbirOr85PNC 92 219 . KQ414804.1 31128 31503 + 126 M 41 123 G 2 0 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31129 31503 126 + . gene_id 3 ; sequence CbirOr85PNC ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31129 31503 . + . KQ414804.1 exonerate:protein2genome:local exon 31129 31503 . + . insertions 0 ; deletions 2 KQ414804.1 exonerate:protein2genome:local similarity 31129 31503 126 + . alignment_id 3 ; Query CbirOr85PNC ; Align 31129 93 123 ; Align 31252 136 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr70NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 199 Query range: 0 -> 221 Target range: 35906 -> 36944 1 : LeuGluTrpAlaIleLysLeuAsnArgIleSerLeuGluValLeuGlyLeuTrpProLys : 20 :!!!!:!::|||!!: !! !||||||.!!||||||...|||||||||:!!||||||:!! MetAspPheAlaMetGlyTrpAsnArgPheSerLeuSerValLeuGlyValTrpProGlu 35907 : ATGGATTTTGCTATGGGATGGAATCGTTTCAGTTTATCTGTACTTGGCGTGTGGCCAGAA : 35964 21 : ValGluGluValProArg<->GluLysLeuLysHisAsnLeuHisValLeuSerIleLeu : 39 !..!:!!:!! !!!.! ..!::!!!! ! !|||!!! !!! !! !! ! ProArgLysMetSerAsnLeuSerArgPheAlaSerAsnPheIlePheTrpPheThrThr 35965 : CCGAGAAAGATGTCTAACCTGTCACGATTCGCGTCTAACTTTATATTCTGGTTCACGACT : 36024 40 : LeuIlePheValLeuSerIleLeuPheProCysIleHisSerLeuValLysThrHisGlu : 59 |||||| |||:!!! !|||! ! !||| !!: !|||||| LeuIleThrValValPheIleCysAlaProGlnMetThrHisLeuValLeuLysSerThr 36025 : TTGATAACGGTTGTCTTCATATGCGCTCCCCAAATGACGCATTTGGTAttaaaatcgacg : 36084 60 : AspIleMetIleIleIleGluHisLeuGlnCysIleLeuProMetIleThrCysIleVal : 79 :::::: :!:||||||:!!|||..! !! !:!!||||||:!! !! :!:! ! AsnLeuAspGluValIleGluAsnLeuSerValAsnIleProMetLeuPheSerLeuGly 36085 : aatttgGACGAGGTGATAGAGAATCTGTCGGTCAACATACCGATGCTCTTCTCATTGGGC : 36144 80 : ArgIleIleValPheTrpTrpLysLysGlu{A} >>>> Target Intron 1 >>>> : 90 !:! !|||:!!.!. ! !:::::!:!:!!{!} 381 bp LysGlnIleIleLeuArgTyrArgArgLys{A}++ 36145 : AAGCAAATCATTCTGCGTTATCGTAGAAAA{G}gt......................... : 36180 91 : {sp}IleIleProIleIleSerMetIleThrGluAspTrpLeuLysSerArgAsnVal : 108 { }:!!:!! !:!!!!:|||...||| !!!:|||||| !:!! !!! ! ! ! ++{la}LeuValPheLeuMetSerGlnIlePheAspAspTrpAlaGluProIleProGlu 36181 : ag{CG}CTAGTATTCTTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAG : 36612 109 : GlnGluArgAsnMetMetIleThrTrpAlaGlnArgSerArgIleIleValIleSerSer : 128 !!!:|||:!!! !|||:!:! ! |||:!!! !||||||!!:||| !||| !!!! ValAspArgHisThrMetLeuLysThrAlaLysIleSerArgMetIleSerIleValCys 36613 : GTGGATCGCCACACGATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTCTGT : 36672 129 : TyrIleValMetGlyIleSerCysPheCysGlyValLeuLeuProIlePheGlyLeuSer : 148 ! !|||:!!! ! !:!!! ! !!!...! !:!!! !|||! !|||!::.!! ||| SerIleLeuThrTyrValMetValLeuAlaPheLeuSerLeuGlnIleTrpSer---Ser 36673 : TCTATCCTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGC---AGC : 36729 149 : LeuThrAspGlyValAsnIleAsnAspThrGluLysIlePheProLeuArgValTyrTyr : 168 :!! !:!! ! !.!..!!|||! !! ! !:!!.!!||| !.! !:! MetGlnAsnThrSerGluPheAsnValGlyGlyLeuLeuIlePro------AlaThrPhe 36730 : ATGCAAAACACCTCGGAGTTCAACGTAGGAGGACTACTTATCCCG------GCCACATTT : 36783 169 : PheTyrAspValThrLysSerProGlnTyrGluLeuThrTyrIleIleLeuThrIleGly : 188 ||||||..!!.!|||||||||.!.||||||:!!|||!:::!! !! ! !:!:||| ProTyrAspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGly 36784 : CCATACGACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGG : 36843 189 : IlePhePheThrAlaThrThrTyrThrGlyIleAspAsnPheLeuGlyLeuLeuIlePhe : 208 ! ! ! !!.!:!|||! ! !|||:!! !!.!!|||!..|||:!!!.!:!!|||:!:!!. ThrValLeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeu 36844 : ACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTA : 36903 209 : HisIleCysGlyGlnLeuAspIleLeuSerThrArgLeu : 221 |||||||||||||||||| !:!!||| !!! ! !||| HisIleCysGlyGlnLeuThrValLeuArgIleAlaLeu 36904 : CACATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTC : 36944 vulgar: CbirOr70NTE 0 221 . KQ414804.1 35906 36944 + 199 M 26 78 G 0 3 M 63 189 S 0 1 5 0 2 I 0 377 3 0 2 S 1 2 M 56 168 G 1 0 M 16 48 G 2 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 35907 36944 199 + . gene_id 1 ; sequence CbirOr70NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 35907 36177 . + . KQ414804.1 exonerate:protein2genome:local exon 35907 36177 . + . insertions 3 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 36178 36179 . + . intron_id 1 ; splice_site "gt" KQ414804.1 exonerate:protein2genome:local intron 36178 36558 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 36557 36558 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 36559 36944 . + . KQ414804.1 exonerate:protein2genome:local exon 36559 36944 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 35907 36944 199 + . alignment_id 1 ; Query CbirOr70NTE ; Align 35907 1 78 ; Align 35988 27 189 ; Align 36561 91 168 ; Align 36729 148 48 ; Align 36777 166 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr70NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 163 -> 217 Target range: 44880 -> 45042 164 : LeuArgValTyrTyrPheTyrAspValThrLysSerProGlnTyrGluLeuThrTyrIle : 183 !!!|||!.!|||!:! !|||||| ! ! ||||||.!.||||||!!!||| ||| PheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThrValIle 44881 : TTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACAGTGATT : 44938 184 : IleLeuThrIleGlyIlePhePheThrAlaThrThrTyrThrGlyIleAspAsnPheLeu : 203 !! !! !|||!.! !|||!:!.!!|||||||||||||||!.!:!!|||!.!|||:!! AlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThrPheIle 44939 : GCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACTTTCATT : 44998 204 : GlyLeuLeuIlePheHisIleCysGlyGlnLeuAspIleLeu : 217 ! !:!!||||||.!.|||:!!||||||||||||...! !||| ValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeu 44999 : GTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTG : 45042 vulgar: CbirOr70NTE 163 217 . KQ414804.1 44880 45042 + 144 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44881 45042 144 + . gene_id 2 ; sequence CbirOr70NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44881 45042 . + . KQ414804.1 exonerate:protein2genome:local exon 44881 45042 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44881 45042 144 + . alignment_id 2 ; Query CbirOr70NTE ; Align 44881 164 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr70NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 92 -> 224 Target range: 31128 -> 31521 93 : ProIleIleSerMetIleThrGluAspTrpLeuLysSerArgAsnValGlnGluArgAsn : 112 |||:!!|||!.! .!! !!!:|||||| !! ||||||!.. :::|||:::... ProValIleLysSerPheTyrAspAspTrpLysThrSerArgThrLysGluGluLysGlu 31129 : CCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACcaaggaggagaaggag : 31186 113 : MetMetIleThrTrpAlaGlnArgSerArgIleIleValIleSerSerTyrIleValMet : 132 |||:!:! ! ! |||:!! !:!!!:! !||| !|||!!!!!!! :!!:!!! ThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIleTrpCysSerValLeuThr 31187 : acCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGGTGCTCAGTATTAACC : 31246 133 : GlyIleSerCysPheCysGlyValLeuLeuProIlePheGlyLeuSerLeuThrAspGly : 152 !! !! ! ! ! ! !:!! !|||! ! !:: !:!!! !! ! !||| !! LeuThrMetValThrValTyrLeuSerLeuArgAlaTrpIleIleTyrGlnLeuAspArg 31247 : TTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATCTACCAGCTTGATAGG : 31306 153 : ValAsnIleAsnAspThrGluLysIlePheProLeuArgValTyrTyrPheTyrAspVal : 172 !.!||| .!. ! !!!:::::!:.!!! !! !! !! !|||!:! !!:!|||:!! AlaAsn---GlnLysGlnAspArgLeuLeuLeuTyrProGlyTyrPheProPheAspIle 31307 : GCAAAC---CAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTATTTTCCCTTCGATATT : 31363 173 : ThrLysSerProGlnTyrGluLeuThrTyrIleIleLeuThrIleGlyIlePhePheThr : 192 ! !! ! ! ! !! !||| !!.!! !! !..!:!!!.! !:!! !.!! ArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeuAlaAlaTyrSerAla 31364 : CGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCAGCGTATTCCGCT : 31423 193 : AlaThrThrTyrThrGlyIleAspAsnPheLeuGlyLeuLeuIlePheHisIleCysGly : 212 !.!! !!:!|||||| !:!:|||!..|||:!!!.!:!!||||||.!.|||||||||||| ValIleSerTyrThrThrValAspThrPheIleAlaMetLeuIleMetHisIleCysGly 31424 : GTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATAATGCACATATGCGGA : 31483 213 : GlnLeuAspIleLeuSerThrArgLeuMetTyrLeu : 224 |||!!!!!:||||||!!! !!:!||| ||| GlnPheGluIleLeuArgGlnLysLeuArgArgLeu 31484 : CAATTTGAGATACTGAGACAGAAATTACGAAGGCTG : 31521 vulgar: CbirOr70NTE 92 224 . KQ414804.1 31128 31521 + 105 M 62 186 G 1 0 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31129 31521 105 + . gene_id 3 ; sequence CbirOr70NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31129 31521 . + . KQ414804.1 exonerate:protein2genome:local exon 31129 31521 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 31129 31521 105 + . alignment_id 3 ; Query CbirOr70NTE ; Align 31129 93 186 ; Align 31315 156 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr64NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 224 Query range: 4 -> 223 Target range: 30797 -> 31515 5 : AlaIleGluPheAsnArgPheAsnLeuThrLeuLeuGlyIleTrpProGluAsnAsnGlu : 24 |||:!!! !!::||||||!::|||:!! !|||:!!||||||||||||||| !:!..! AlaLeuGlyTrpAsnArgTrpAsnMetGluLeuValGlyIleTrpProGluProSerArg 30798 : GCACTTGGATGGAACCGTTGGAACATGGAACTGGTTGGAATTTGGCCAGAACCGAGCAGA : 30855 25 : AspLysGlnLysLysLeuLysSerAspIleArgValValLeuIleLeuAsnIleIleMet : 44 ..! ! |||::! ! !!:!!.!!!:!!.!:!!|||.!!:!! !:::|||::: SerAspGlnArg------TrpProAsnPheLysAlaLeuLeuPheIlePheValIleIle 30856 : TCTGATCAACGA------TGGCCGAATTTCAAGGCTTTGCTGTTCATTTTTGtgataata : 30909 45 : TrpThrSerIleIleProThrLeuHisSerLeuLeuLysIleTyrAspAspIleMetLeu : 64 ::: ... ! !||| ! ! !:!|||||| |||!::! |||:!! ||| PhePheGlyThrGlyProGlnSerValAsnLeuLeuPheIleTrpGlyAspLeuGlyLeu 30910 : ttttttggaaCCGGACCTCAGAGCGTGAATCTACTTTTCATATGGGGAGACCTTGGATTG : 30969 65 : ThrIleAspAsnLeuGln<->TyrThrLeuSerMetLeuMetAlaLeuIleLysLeuIle : 83 ..!! !!:||||||... !!.!:!! !! :!!! |||:!!!!:||||||||| ValThrGluAsnLeuSerThrAlaAsnIleProGlyIleAsnAlaMetMetLysLeuIle 30970 : GTCACGGAAAATCTGTCCACGGCTAATATTCCCGGCATAAACGCCATGATGAAACTGATT : 31029 84 : IleLeuTrpHisLysLysTyr{A} >>>> Target Intron 1 >>>> {sp}Ile : 92 ||| !|||||| ! !:! !!{!} 67 bp { !}.!! IleAlaTrpHisHisArgAsp{A}++ ++{la}Phe 31030 : ATCGCCTGGCATCACAGAGAT{G}gt.........................ag{ct}tTC : 31123 93 : LeuProValLeuAsnMetIleLysAspAspTrpLeuArgProGlnThrSerLysGluLys : 112 !||||||:!!!!. .!! ! ||||||||| !! ! !!::!|||...:::|||||| LysProValIleLysSerPheTyrAspAspTrpLysThrSerArgThrLysGluGluLys 31124 : AAGCCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACcaaggaggagaag : 31183 113 : AsnIleMetIleLysGlnAlaArgIleAlaArgThrLeuThrIlePheSerPhePheVal : 132 ... !|||:!:|||::!|||!:!.!!|||!:! !:!!:!!|||!::!!!! ! :!! GluThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIleTrpCysSerValLeu 31184 : gagacCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGGTGCTCAGTATTA : 31243 133 : ThrLeuMetSerGlyIleIleValSerPheLeuProLeuPheGlyIleSerLeuArgTyr : 152 ||||||! ! !! !! !:!! ! ! !|||! ! !!:: !|||! !! !! ! !! ThrLeuThrMetValThrValTyrLeuSerLeuArgAlaTrpIleIleTyrGlnLeuAsp 31244 : ACCTTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATCTACCAGCTTGAT : 31303 153 : ArgThrAsnArgThrAspProGlyArgLeuLeuProLeuGlnThrTyrTyrLeuTyrAsn : 172 |||.!!|||!:!! !.!. ! !|||||||||! !! !! !|||!:!! !!:!:!! ArgAlaAsnGlnLysGln---AspArgLeuLeuLeuTyrProGlyTyrPheProPheAsp 31304 : AGGGCAAACCAGAAACAG---GATCGTCTGCTCCTGTACCCTGGCTATTTTCCCTTCGAT : 31360 173 : ValAsnSerSerProLeuTyrGluValThrPheLeuLeuGlnGlyPheSerValMetAla : 192 :!!..! !!! ! !:!! ! !||| !!!! !|||! !.!!:!!!.! :!! IleArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeuAlaAlaTyrSer 31361 : ATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCAGCGTATTCC : 31420 193 : PheAlaThrMetTyrSerSerMetAspThrPheMetSerValLeuValPheHisIleCys : 212 !!.!! !! |||!!!!!!:!!|||||||||!!::!!:!!|||:!!.!.||||||||| AlaValIleSerTyrThrThrValAspThrPheIleAlaMetLeuIleMetHisIleCys 31421 : GCTGTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATAATGCACATATGC : 31480 213 : GlyGlnLeuGluAsnLeuLysThrArgIleArg : 223 ||||||!!!|||! |||!:! !!:!:!!||| GlyGlnPheGluIleLeuArgGlnLysLeuArg 31481 : GGACAATTTGAGATACTGAGACAGAAATTACGA : 31515 vulgar: CbirOr64NTE 4 223 . KQ414804.1 30797 31515 + 224 M 24 72 G 2 0 M 40 120 G 0 3 M 20 60 S 0 1 5 0 2 I 0 63 3 0 2 S 1 2 M 67 201 G 1 0 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 30798 31515 224 + . gene_id 1 ; sequence CbirOr64NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 30798 31053 . + . KQ414804.1 exonerate:protein2genome:local exon 30798 31053 . + . insertions 3 ; deletions 2 KQ414804.1 exonerate:protein2genome:local splice5 31054 31055 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 31054 31120 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 31119 31120 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 31121 31515 . + . KQ414804.1 exonerate:protein2genome:local exon 31121 31515 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 30798 31515 224 + . alignment_id 1 ; Query CbirOr64NTE ; Align 30798 5 72 ; Align 30870 31 120 ; Align 30993 71 60 ; Align 31123 92 201 ; Align 31324 160 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr64NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 216 Query range: 2 -> 224 Target range: 35909 -> 36950 3 : GluTrpAlaIleGluPheAsnArgPheAsnLeuThrLeuLeuGlyIleTrpProGluAsn : 22 !!:!::|||!!:! !!::|||||||||!:!|||:!!:!!||||||:!:||||||||| AspPheAlaMetGlyTrpAsnArgPheSerLeuSerValLeuGlyValTrpProGluPro 35910 : GATTTTGCTATGGGATGGAATCGTTTCAGTTTATCTGTACTTGGCGTGTGGCCAGAACCG : 35967 23 : AsnGlu<->AspLysGlnLysLysLeuLysSerAspIleArgValValLeuIleLeuAsn : 41 !..:!! ..!!!.! !..!::!!!! !|||:!!.!!! ! !! !!!!! ! ArgLysMetSerAsnLeuSerArgPheAlaSerAsnPheIlePheTrpPheThrThrLeu 35968 : AGAAAGATGTCTAACCTGTCACGATTCGCGTCTAACTTTATATTCTGGTTCACGACTTTG : 36027 42 : IleIleMetTrpThrSerIleIleProThrLeuHisSerLeuLeuLysIleTyrAspAsp : 61 |||! :!: !! ! ! !||| !:!! !|||:!! ::: IleThrValValPheIleCysAlaProGlnMetThrHisLeuValLeuLysSerThrAsn 36028 : ATAACGGTTGTCTTCATATGCGCTCCCCAAATGACGCATTTGGTAttaaaatcgacgaat : 36087 62 : IleMetLeuThrIleAspAsnLeuGlnTyrThrLeuSerMetLeuMetAlaLeu{I} > : 80 ::: !..!|||!!:||||||..! !!.!:!! !!||||||.!.:!!|||{ } LeuAspGluValIleGluAsnLeuSerValAsnIleProMetLeuPheSerLeu{A}+- 36088 : ttgGACGAGGTGATAGAGAATCTGTCGGTCAACATACCGATGCTCTTCTCATTG{G}gc. : 36147 81 : >>> Target Intron 1 >>>> {le}LysLeuIleIleLeuTrpHisLysLysTyr : 90 381 bp { !}|||||||||... |||! !... +-{sp}LysLeuIlePheThrIleHisThrSerLeu 36148 : ........................aa{AC}AAACtgattttcacaattcacACGTCTCTA : 36555 91 : AspIleLeuProValLeuAsnMetIleLysAspAspTrpLeuArgProGlnThrSerLys : 110 ! :!!:!! !:!!:!!!:!...||| ||||||||| !..!||| !!..! ! AlaLeuValPheLeuMetSerGlnIlePheAspAspTrpAlaGluProIleProGluVal 36556 : GCGCTAGTATTCTTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTG : 36615 111 : GluLysAsnIleMetIleLysGlnAlaArgIleAlaArgThrLeuThrIlePheSerPhe : 130 !!:::::!!! |||:!:||| |||!:!|||::!|||! !:!!:!!||| !!!!!! ! AspArgHisThrMetLeuLysThrAlaLysIleSerArgMetIleSerIleValCysSer 36616 : GATCGCCACACGATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTCTGTTCT : 36675 131 : PheValThrLeuMetSerGlyIleIleValSerPheLeuProLeuPheGlyIleSerLeu : 150 .!!:!!|||! !:!: !!::!!:!!:!!|||||| !!||| ! ||| ! IleLeuThrTyrVal------MetValLeuAlaPheLeuSerLeuGlnIleTrpSerSer 36676 : ATCCTGACGTATGTC------ATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGCAGC : 36729 151 : ArgTyrArgThrAsnArgThrAspProGlyArgLeuLeuProLeuGlnThrTyrTyrLeu : 170 ! ! ! !.!|||:::..! !:!! !||| !!|||||| :!!! !.!! !:!! ! MetGlnAsnThrSerGluPheAsnValGlyGlyLeuLeu---IleProAlaThrPhePro 36730 : ATGCAAAACACCTCGGAGTTCAACGTAGGAGGACTACTT---ATCCCGGCCACATTTCCA : 36786 171 : TyrAsnValAsnSerSerProLeuTyrGluValThrPheLeuLeuGlnGlyPheSerVal : 190 |||:!!..!|||!.!|||||| !||||||:!!|||!::||| !||| ! ! .!!..! TyrAspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThr 36787 : TACGACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACA : 36846 191 : MetAlaPheAlaThrMetTyrSerSerMetAspThrPheMetSerValLeuValPheHis : 210 :!! ! !|||! ! ||||||!!!.!.|||||||||:!::!!|||||||||!!.||| ValLeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHis 36847 : GTGTTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACAC : 36906 211 : IleCysGlyGlnLeuGluAsnLeuLysThrArgIleArgAsn : 224 ||||||||||||||| !|||:::! ! !:!!..!||| IleCysGlyGlnLeuThrValLeuArgIleAlaLeuGluAsn 36907 : ATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTCGAGAAT : 36950 vulgar: CbirOr64NTE 2 224 . KQ414804.1 35909 36950 + 216 M 22 66 G 0 3 M 55 165 S 0 1 5 0 2 I 0 377 3 0 2 S 1 2 M 55 165 G 2 0 M 26 78 G 1 0 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 35910 36950 216 + . gene_id 2 ; sequence CbirOr64NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 35910 36144 . + . KQ414804.1 exonerate:protein2genome:local exon 35910 36144 . + . insertions 3 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 36145 36146 . + . intron_id 1 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 36145 36525 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 36524 36525 . + . intron_id 0 ; splice_site "AA" KQ414804.1 exonerate:protein2genome:local cds 36526 36950 . + . KQ414804.1 exonerate:protein2genome:local exon 36526 36950 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 35910 36950 216 + . alignment_id 2 ; Query CbirOr64NTE ; Align 35910 3 66 ; Align 35979 25 165 ; Align 36528 81 165 ; Align 36693 138 78 ; Align 36771 165 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr64NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 133 -> 219 Target range: 44790 -> 45045 134 : LeuMetSerGlyIleIleValSerPheLeuProLeuPheGlyIleSerLeuArgTyrArg : 153 :!!! ||| !:!::!! ! !.!!:!! !:!! ! !|||! !||||||!:!! ! IleSerSerThrValLeuCysHisIleValValIleThrTyrIlePheLeuArgPheLeu 44791 : ATAAGCAGCACAGTGTTATGTCACATTGTGGTCATCACTTATATATTTCTACGATTCCTC : 44848 154 : ThrAsnArgThrAspProGlyArgLeuLeuProLeuGlnThrTyrTyrLeuTyrAsnVal : 173 |||!..!:! !..! ! !||||||||| !!!!::.!!|||!:!! !|||:!! ! ThrArgLysTyrSerGlyThrArgLeuLeu---PheArgAlaTyrPheProTyrAspSer 44849 : ACCAGGAAGTACAGCGGCACCAGACTACTC---TTCCGTGCTTATTTCCCTTACGACAGC : 44905 174 : AsnSerSerProLeuTyrGluValThrPheLeuLeuGlnGlyPheSerValMetAlaPhe : 193 :!! !|||||| !|||||| !!||| ! :!! !||| !.!.:!!!.!.!. ! AspValSerProAsnTyrGluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAla 44906 : GATGTCAGTCCAAATTACGAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCA : 44965 194 : AlaThrMetTyrSerSerMetAspThrPheMetSerValLeuValPheHisIleCysGly : 213 ||||||! |||!!!:!!:!:|||||||||!!: !:!!|||:!!.!.|||:!!|||||| AlaThrThrTyrThrAlaValAspThrPheIleValMetLeuIleLeuHisValCysGly 44966 : GCCACCACATACACAGCCGTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGA : 45025 214 : GlnLeuGluAsnLeuLys : 219 ||||||..!||||||!:! GlnLeuSerAsnLeuArg 45026 : CAACTTTCGAATTTGAGA : 45045 vulgar: CbirOr64NTE 133 219 . KQ414804.1 44790 45045 + 134 M 30 90 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44791 45045 134 + . gene_id 3 ; sequence CbirOr64NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44791 45045 . + . KQ414804.1 exonerate:protein2genome:local exon 44791 45045 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 44791 45045 134 + . alignment_id 3 ; Query CbirOr64NTE ; Align 44791 134 90 ; Align 44881 165 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr64NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 325 -> 385 Target range: 34399 -> 34662 326 : AspAlaValCysGlnTyrGluTrpTyrArgLeuLysProLysGlnMetLysAsnPheLeu : 345 :!!:!!!.!! !:!!! .!.||||||!.!:!!..!||| !:!! ||| !.!!||| AsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProProGluAlaLysCysLeuLeu 34400 : AATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCAGAAGCCAAGTGCCTTTTA : 34457 346 : AsnIleMetMetGlnSerArgArgProLeuHisLeuThrAlaGlyLysLeuPheProMet : 365 !|||||| ::!!!! !||||||||| !|||||||||||||||!!! ! !!.!. PheIleMetHisArgThrAlaArgProLeuCysLeuThrAlaGlyLysPheSerThrPhe 34458 : TTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCAGGAAAATTCAGTACCTTC : 34517 366 : ThrValAlaThrLeuSerAsn >>>> Target Intron 1 >>>> LeuLeuLysT : 376 :!!:!!! !! !!!!|||!.! 83 bp :::||||||| SerMetGluMetPheSerThr++ ++IleLeuLysT 34518 : TCCATGGAAATGTTCAGTACTgt.........................agattcTGAAAA : 34633 377 : hrSerGlyGlyTyrIleSerValLeuLeu : 385 ||:!! !||||||:!!|||||||||||| hrAlaMetGlyTyrLeuSerValLeuLeu 34634 : CAGCAATGGGATATCTTTCAGTTCTCCTC : 34662 vulgar: CbirOr64NTE 325 385 . KQ414804.1 34399 34662 + 105 M 47 141 5 0 2 I 0 79 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34400 34662 105 + . gene_id 4 ; sequence CbirOr64NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34400 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34400 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34662 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34662 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34400 34662 105 + . alignment_id 4 ; Query CbirOr64NTE ; Align 34400 326 141 ; Align 34624 373 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr69NI Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 189 Query range: 1 -> 222 Target range: 35906 -> 36944 2 : LeuGluTrpAlaIleLysLeuAsnArgIleSerLeuGluValLeuGlyLeuTrpProLys : 21 :!!!!:!::|||!!: !! !||||||.!!||||||...|||||||||:!!||||||:!! MetAspPheAlaMetGlyTrpAsnArgPheSerLeuSerValLeuGlyValTrpProGlu 35907 : ATGGATTTTGCTATGGGATGGAATCGTTTCAGTTTATCTGTACTTGGCGTGTGGCCAGAA : 35964 22 : ValGluGluValProArg<->GluLysLeuLysArgAsnLeuHisValLeuAlaIleLeu : 40 !..!:!!:!! !!!.! ..!::!!!! ! !|||!!! !!! ! !! ! ProArgLysMetSerAsnLeuSerArgPheAlaSerAsnPheIlePheTrpPheThrThr 35965 : CCGAGAAAGATGTCTAACCTGTCACGATTCGCGTCTAACTTTATATTCTGGTTCACGACT : 36024 41 : LeuLeuPheValPheGlyValLeuPheProCysIleHisSerLeuIleLysThrHisGlu : 60 |||:!! ||| !! !:!!! ! !||| !!: !|||:!! LeuIleThrValValPheIleCysAlaProGlnMetThrHisLeuValLeuLysSerThr 36025 : TTGATAACGGTTGTCTTCATATGCGCTCCCCAAATGACGCATTTGGTAttaaaatcgacg : 36084 61 : AspIleMetIleValIleGluHisLeuGlnGlyIleLeuProIleIleThrCysValVal : 80 :::::: |||||||||:!!|||..!! !! !:!!|||!!::!! !! :!!! ! AsnLeuAspGluValIleGluAsnLeuSerValAsnIleProMetLeuPheSerLeuGly 36085 : aatttgGACGAGGTGATAGAGAATCTGTCGGTCAACATACCGATGCTCTTCTCATTGGGC : 36144 81 : ArgIleIleValPheTrpTrpLysLysGlu{A} >>>> Target Intron 1 >>>> : 91 !:! !|||:!!.!. ! !:::::!:!:!!{!} 381 bp LysGlnIleIleLeuArgTyrArgArgLys{A}++ 36145 : AAGCAAATCATTCTGCGTTATCGTAGAAAA{G}gt......................... : 36180 92 : {sp}ValIleProIleIleSerMetIleThrGluAspTrpLeuLysSerArgAspVal : 109 { }:!!:!! !:!!!!:|||...||| !!!:|||||| !:!! !!! ! ! ! ++{la}LeuValPheLeuMetSerGlnIlePheAspAspTrpAlaGluProIleProGlu 36181 : ag{CG}CTAGTATTCTTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAG : 36612 110 : GlnGluLysLysValMetIleThrTrpAlaGlnLysSerArgIleIleValIleSerSer : 129 !!!:::: ! ..!|||:!:! ! |||:!!! ||||||!!:||| !||| !!!! ValAspArgHisThrMetLeuLysThrAlaLysIleSerArgMetIleSerIleValCys 36613 : GTGGATCGCCACACGATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTCTGT : 36672 130 : TyrIleValMetGlyValThrSerValCysGlyValLeuLeuProIlePheGlyIleSer : 149 ! !|||:!!! ! !|||! ! !:!!..! !:!!! !|||! !|||!::.!! ||| SerIleLeuThrTyrValMetValLeuAlaPheLeuSerLeuGlnIleTrpSer---Ser 36673 : TCTATCCTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGC---AGC : 36729 150 : ProThrHisGlyValAsnIleAsnAspThrGluLysMetPheProLeuArgValTyrTyr : 169 ! !:!! ! !.!..!!|||! !! ! !:!:.!!||| !.! !:! MetGlnAsnThrSerGluPheAsnValGlyGlyLeuLeuIlePro------AlaThrPhe 36730 : ATGCAAAACACCTCGGAGTTCAACGTAGGAGGACTACTTATCCCG------GCCACATTT : 36783 170 : PheTyrAspValThrLysSerProGlnTyrGluLeuThrTyrIleSerLeuSerIleGly : 189 ||||||..!!.!|||||||||.!.||||||:!!|||!:::!!.!!! !! !:!:||| ProTyrAspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGly 36784 : CCATACGACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGG : 36843 190 : IleLeuPheAlaAlaIleThrTyrThrGlyIleAspAsnPheLeuGlyLeuLeuValPhe : 209 ! !:!!!!.::!|||||| !|||:!! !!.!!|||!..|||:!!!.!:!!||||||!!. ThrValLeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeu 36844 : ACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTA : 36903 210 : HisIleCysGlyGlnIleAspIleLeuSerThrArgLeu : 222 |||||||||||||||:!! !:!!||| !!! ! !||| HisIleCysGlyGlnLeuThrValLeuArgIleAlaLeu 36904 : CACATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTC : 36944 vulgar: CbirOr69NI 1 222 . KQ414804.1 35906 36944 + 189 M 26 78 G 0 3 M 63 189 S 0 1 5 0 2 I 0 377 3 0 2 S 1 2 M 56 168 G 1 0 M 16 48 G 2 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 35907 36944 189 + . gene_id 1 ; sequence CbirOr69NI ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 35907 36177 . + . KQ414804.1 exonerate:protein2genome:local exon 35907 36177 . + . insertions 3 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 36178 36179 . + . intron_id 1 ; splice_site "gt" KQ414804.1 exonerate:protein2genome:local intron 36178 36558 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 36557 36558 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 36559 36944 . + . KQ414804.1 exonerate:protein2genome:local exon 36559 36944 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 35907 36944 189 + . alignment_id 1 ; Query CbirOr69NI ; Align 35907 2 78 ; Align 35988 28 189 ; Align 36561 92 168 ; Align 36729 149 48 ; Align 36777 167 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr69NI Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 164 -> 218 Target range: 44880 -> 45042 165 : LeuArgValTyrTyrPheTyrAspValThrLysSerProGlnTyrGluLeuThrTyrIle : 184 !!!|||!.!|||!:! !|||||| ! ! ||||||.!.||||||!!!||| ||| PheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThrValIle 44881 : TTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACAGTGATT : 44938 185 : SerLeuSerIleGlyIleLeuPheAlaAlaIleThrTyrThrGlyIleAspAsnPheLeu : 204 :!!! !! !|||!.! !!!!!:!||||||! !|||||||||!.!:!!|||!.!|||:!! AlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThrPheIle 44939 : GCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACTTTCATT : 44998 205 : GlyLeuLeuValPheHisIleCysGlyGlnIleAspIleLeu : 218 ! !:!!|||:!!.!.|||:!!|||||||||:!!...! !||| ValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeu 44999 : GTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTG : 45042 vulgar: CbirOr69NI 164 218 . KQ414804.1 44880 45042 + 134 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44881 45042 134 + . gene_id 2 ; sequence CbirOr69NI ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44881 45042 . + . KQ414804.1 exonerate:protein2genome:local exon 44881 45042 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44881 45042 134 + . alignment_id 2 ; Query CbirOr69NI ; Align 44881 165 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr69NI Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 93 -> 222 Target range: 31128 -> 31512 94 : ProIleIleSerMetIleThrGluAspTrpLeuLysSerArgAspValGlnGluLysLys : 113 |||:!!|||!.! .!! !!!:|||||| !! |||||| :::||||||::: ProValIleLysSerPheTyrAspAspTrpLysThrSerArgThrLysGluGluLysGlu 31129 : CCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACcaaggaggagaaggag : 31186 114 : ValMetIleThrTrpAlaGlnLysSerArgIleIleValIleSerSerTyrIleValMet : 133 ..!|||:!:! ! ! |||:!! :!!!:! !||| !|||!!!!!!! :!!:!!! ThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIleTrpCysSerValLeuThr 31187 : acCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGGTGCTCAGTATTAACC : 31246 134 : GlyValThrSerValCysGlyValLeuLeuProIlePheGlyIleSerProThrHisGly : 153 !..!! ! !..! ! !:!! !|||! ! !:: !|||! !! ! ! !! !! LeuThrMetValThrValTyrLeuSerLeuArgAlaTrpIleIleTyrGlnLeuAspArg 31247 : TTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATCTACCAGCTTGATAGG : 31306 154 : ValAsnIleAsnAspThrGluLysMetPheProLeuArgValTyrTyrPheTyrAspVal : 173 !.!||| .!. ! !!!:::::!!.!!! !! !! !! !|||!:! !!:!|||:!! AlaAsn---GlnLysGlnAspArgLeuLeuLeuTyrProGlyTyrPheProPheAspIle 31307 : GCAAAC---CAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTATTTTCCCTTCGATATT : 31363 174 : ThrLysSerProGlnTyrGluLeuThrTyrIleSerLeuSerIleGlyIleLeuPheAla : 193 ! !! ! ! ! !! !||| !!.!!.!!! ! !:!!!.! ! !! !||| ArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeuAlaAlaTyrSerAla 31364 : CGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCAGCGTATTCCGCT : 31423 194 : AlaIleThrTyrThrGlyIleAspAsnPheLeuGlyLeuLeuValPheHisIleCysGly : 213 !.!|||!:!|||||| !:!:|||!..|||:!!!.!:!!|||:!!.!.|||||||||||| ValIleSerTyrThrThrValAspThrPheIleAlaMetLeuIleMetHisIleCysGly 31424 : GTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATAATGCACATATGCGGA : 31483 214 : GlnIleAspIleLeuSerThrArgLeu : 222 |||.!!!!:||||||!!! !!:!||| GlnPheGluIleLeuArgGlnLysLeu 31484 : CAATTTGAGATACTGAGACAGAAATTA : 31512 vulgar: CbirOr69NI 93 222 . KQ414804.1 31128 31512 + 112 M 62 186 G 1 0 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31129 31512 112 + . gene_id 3 ; sequence CbirOr69NI ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31129 31512 . + . KQ414804.1 exonerate:protein2genome:local exon 31129 31512 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 31129 31512 112 + . alignment_id 3 ; Query CbirOr69NI ; Align 31129 94 186 ; Align 31315 157 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr63NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 189 Query range: 14 -> 220 Target range: 35942 -> 36935 15 : ThrLeuLeuGlyIleTrpProGluAsnHisGluThrLysGlnLysLysLeuMetSerAsp : 34 :!!:!!||||||:!:||||||||| ...:!!! !....!. !..!! !.!.:!!..! SerValLeuGlyValTrpProGluProArgLysMetSerAsnLeuSerArgPheAlaSer 35943 : TCTGTACTTGGCGTGTGGCCAGAACCGAGAAAGATGTCTAACCTGTCACGATTCGCGTCT : 36000 35 : IleArgValIleIleThrLeuAsnLeuIleThrTrpIleCysLeu<->IleProSerLeu : 53 ! ! !:!!.!! ! !!.!||||||||| :!!! !:!! !|||..!:!! AsnPheIlePheTrpPheThrThrLeuIleThrValValPheIleCysAlaProGlnMet 36001 : AACTTTATATTCTGGTTCACGACTTTGATAACGGTTGTCTTCATATGCGCTCCCCAAATG : 36060 54 : HisSerLeuLeuLysIleTyrAspAspIleIleLeuThrIleAspAsnLeuGlnTyrThr : 73 !|||:!! :::::: ! !..!|||!!:||||||..! !!.! ThrHisLeuValLeuLysSerThrAsnLeuAspGluValIleGluAsnLeuSerValAsn 36061 : ACGCATTTGGTAttaaaatcgacgaatttgGACGAGGTGATAGAGAATCTGTCGGTCAAC : 36120 74 : LeuProLeuLeuMetAlaIle{I} >>>> Target Intron 1 >>>> {le}Lys : 82 :!!|||:!!|||.!.:!!:!:{ } 381 bp { !}||| IleProMetLeuPheSerLeu{A}+- +-{sp}Lys 36121 : ATACCGATGCTCTTCTCATTG{G}gc.........................aa{AC}AAA : 36528 83 : LeuSerIleMetTrpHisLysLysAsnAspIleLeuProLeuLeuAsnMetIleLysAsp : 102 ||| ... |||! !... ! :!!:!! !|||:!!!:!...||| ||| LeuIlePheThrIleHisThrSerLeuAlaLeuValPheLeuMetSerGlnIlePheAsp 36529 : CtgattttcacaattcacACGTCTCTAGCGCTAGTATTCTTAATGAGCCAAATATTCGAC : 36588 103 : AspTrpLeuArgProLysThrSerGluGluArgAsnValMetIleLysGlnAlaArgIle : 122 |||||| !..!|||! !!..!! !!!:|||:!!..!|||:!:||| |||!:!||| AspTrpAlaGluProIleProGluValAspArgHisThrMetLeuLysThrAlaLysIle 36589 : GACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACGATGCTGAAGACCGCGAAAATT : 36648 123 : AlaArgIleLeuThrIlePheCysCysCysIleMetLeuIleSerAlaIleValIleLeu : 142 ::!|||!!::!!:!!||| !!|||! ! !:!:! !! !:!!! !!.!:!:!.!.!!||| SerArgMetIleSerIleValCysSerIleLeuThrTyrValMetValLeuAlaPheLeu 36649 : AGTCGAATGATATCCATAGTCTGTTCTATCCTGACGTATGTCATGGTTTTGGCCTTCTTG : 36708 143 : ValIleProLeuPheGlyIleSerMetArgTyrArgThrAsnArgThrAspSerAspLys : 162 !:!!! !:!!!::.!! ||||||!:! !!! !:!!.!. !!.!! .!!! ! SerLeuGlnIleTrpSer---SerMetGlnAsnThrSerGluPheAsnValGlyGlyLeu 36709 : TCACTTCAAATTTGGAGC---AGCATGCAAAACACCTCGGAGTTCAACGTAGGAGGACTA : 36765 163 : SerLeuProLeuGlnThrTyrTyrValTyrAspLysGluLysSerProPhePheGluIle : 182 !:!!||| .!! !:! !||||||! !.!.||||||||| !!:!|||||| LeuIlePro------AlaThrPheProTyrAspThrAsnLysSerProAsnTyrGluIle 36766 : CTTATCCCG------GCCACATTTCCATACGACACGAATAAAAGTCCTAATTACGAAATT : 36819 183 : ThrTyrValLeuGlnCysIleSerAlaThrLeuSerGlyPheMetTyrSerGlyThrAsp : 202 |||!:::!! !|||! !:!:.!!.!!..!||||||!.!.!. |||||| !! !||| ThrTrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSerCysPheAsp 36820 : ACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGAT : 36879 203 : SerPheLeuThrPheLeuValPheHisValCysGlyGlnLeuGluAsnLeuLys : 220 !!!|||:!!.!! !!||||||!!.|||:!!|||||||||||| !|||::: ThrPheValAlaValLeuValLeuHisIleCysGlyGlnLeuThrValLeuArg 36880 : ACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACTGTTCTCCGC : 36935 vulgar: CbirOr63NTE 14 220 . KQ414804.1 35942 36935 + 189 M 35 105 G 0 3 M 31 93 S 0 1 5 0 2 I 0 377 3 0 2 S 1 2 M 67 201 G 1 0 M 16 48 G 2 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 35943 36935 189 + . gene_id 1 ; sequence CbirOr63NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 35943 36144 . + . KQ414804.1 exonerate:protein2genome:local exon 35943 36144 . + . insertions 3 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 36145 36146 . + . intron_id 1 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 36145 36525 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 36524 36525 . + . intron_id 0 ; splice_site "AA" KQ414804.1 exonerate:protein2genome:local cds 36526 36935 . + . KQ414804.1 exonerate:protein2genome:local exon 36526 36935 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 35943 36935 189 + . alignment_id 1 ; Query CbirOr63NTE ; Align 35943 15 105 ; Align 36051 50 93 ; Align 36528 82 201 ; Align 36729 150 48 ; Align 36777 168 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr63NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 286 -> 386 Target range: 33825 -> 34662 287 : ArgAsnValSerValThrArgLeuIlePheIleGlyIleValSerPheThrThrPheThr : 306 !:!...:!!! ! !..!!:!|||:!!|||.!!! !:!: !! !! ! !! !.!!..! LysGlyIlePheAsnValGlnLeuLeuPhePheValLeuPheValCysPheIleLeuVal 33826 : AAAGGAATATTCAACGTGCAATTGCTTTTCTTCGTGCTGTTCGTATGCTTCATCCTTGTA : 33883 307 : HisMetCysLeuTyrCysValValGlyGluIleLeuLeuAlaHis >>>> Target I : 322 |||!!:! !:!!|||||| !:!!||||||!!:||||||.!!||| 454 HisIleTyrIleTyrCysTyrIleGlyGluMetLeuLeuThrHis+- 33884 : CACATCTACATTTATTGTTACATAGGAGAGATGCTACTCACACATgc............. : 33933 323 : ntron 1 >>>> CysGluAlaValTyrAspAlaAlaTyrGluTyrAsnTrpTyrThrL : 337 bp !!..!! !:!! !:!!:!!|||||||||! |||||||||!.!: ++SerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnV 33934 : ............agAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACG : 34430 338 : euGluProLysLysAlaArgAsnIleLeuMetIleMetIleArgAlaAsnLysProLeuT : 357 !!..!||| !:!!|||!:! !:!!|||.!.|||||| !|||.!! !:::||||||! alSerProProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuC 34431 : TCTCACCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTT : 34490 358 : yrLeuThrAlaGlyLysLeuPheProLeuThrMetAlaMetPheCysAsn >>>> Tar : 374 !|||||||||||||||!!! ! !!!!!:!!|||! !|||||| !!!.! ysLeuThrAlaGlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34491 : GCTTGACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt........ : 34543 375 : get Intron 2 >>>> LeuLeuLysThrSerGlyGlyTyrIleSerValLeuLeu : 386 83 bp :::|||||||||:!! !||||||:!!|||||||||||| ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeu 34544 : .................agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTC : 34662 vulgar: CbirOr63NTE 286 386 . KQ414804.1 33825 34662 + 177 M 35 105 5 0 2 I 0 450 3 0 2 M 52 156 5 0 2 I 0 79 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33826 34662 177 + . gene_id 2 ; sequence CbirOr63NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33826 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33826 33930 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 1 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 1 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34662 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34662 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33826 34662 177 + . alignment_id 2 ; Query CbirOr63NTE ; Align 33826 287 105 ; Align 34385 322 156 ; Align 34624 374 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr63NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 133 -> 220 Target range: 44787 -> 45045 134 : MetLeuIleSerAlaIleValIleLeuValIleProLeuPheGlyIleSerMetArgTyr : 153 !!::!!! !|||.!!:!::!! !! !:!!:!: !:!! ! !|||! !:!:|||!:! IleIleSerSerThrValLeuCysHisIleValValIleThrTyrIlePheLeuArgPhe 44788 : ATAATAAGCAGCACAGTGTTATGTCACATTGTGGTCATCACTTATATATTTCTACGATTC : 44845 154 : ArgThrAsnArgThrAspSerAspLysSerLeuProLeuGlnThrTyrTyrValTyrAsp : 173 ! !||| |||! ! !!|||! !! !!!|||! !!!!!::.!!|||!:! !|||||| LeuThr---ArgLysTyrSerGlyThrArgLeuLeuPheArgAlaTyrPheProTyrAsp 44846 : CTCACC---AGGAAGTACAGCGGCACCAGACTACTCTTCCGTGCTTATTTCCCTTACGAC : 44902 174 : LysGluLysSerProPhePheGluIleThrTyrValLeuGlnCysIleSerAlaThrLeu : 193 !..!!: |||||| !!:!|||.!!||| :!! !||| !|||:!!||| !! ! SerAspValSerProAsnTyrGluPheThrValIleAlaGlnIleIleAlaAlaPheTyr 44903 : AGCGATGTCAGTCCAAATTACGAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTAT : 44962 194 : SerGlyPheMetTyrSerGlyThrAspSerPheLeuThrPheLeuValPheHisValCys : 213 :!!!.! !! |||!!!!.!..!|||!!!|||:!!..!.!.|||:!!.!.||||||||| AlaAlaThrThrTyrThrAlaValAspThrPheIleValMetLeuIleLeuHisValCys 44963 : GCAGCCACCACATACACAGCCGTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGT : 45022 214 : GlyGlnLeuGluAsnLeuLys : 220 |||||||||..!||||||!:! GlyGlnLeuSerAsnLeuArg 45023 : GGACAACTTTCGAATTTGAGA : 45045 vulgar: CbirOr63NTE 133 220 . KQ414804.1 44787 45045 + 136 M 22 66 G 1 0 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44788 45045 136 + . gene_id 3 ; sequence CbirOr63NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44788 45045 . + . KQ414804.1 exonerate:protein2genome:local exon 44788 45045 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 44788 45045 136 + . alignment_id 3 ; Query CbirOr63NTE ; Align 44788 134 66 ; Align 44854 157 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr59PN Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 2 -> 134 Target range: 36569 -> 36950 3 : IleIleLysMetIleValGluAspTrpLeuLysSerLysThrIleTyrGluLysAsnAla : 22 :!!!!:!.....||| !!!!:|||||| !:!! !!! !! !!:::::!!.!! LeuMetSerGlnIlePheAspAspTrpAlaGluProIleProGluValAspArgHisThr 36570 : TTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACG : 36627 23 : MetMetLysTrpAlaLeuArgAlaArgIleIleIleThrCysThrTyrLeuValIleVal : 42 |||:!!||| ||| !! !::!||| !!:|||:!! ..!! !! !:!!:!:..! MetLeuLysThrAlaLysIleSerArg---MetIleSerIleValCysSerIleLeuThr 36628 : ATGCTGAAGACCGCGAAAATTAGTCGA---ATGATATCCATAGTCTGTTCTATCCTGACG : 36684 43 : LeuAlaPheIleLeuLeuPheGlyMetProIleIleGlyLysSerMetAlaLeuThrPro : 62 ! !!.!.!.:!!||| !||| ! ! ! !||| !!!..|||||| ! !||| !! TyrValMetValLeuAlaPheLeuSerLeuGlnIleTrpSerSerMetGlnAsnThrSer 36685 : TATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGCAGCATGCAAAACACCTCG : 36744 63 : AsnIleThrAspSerGlyLysSerMetLeuMetProThrTyrTyrIleTyrAspValThr : 82 .!..!!!.!! .!!||| :!:|||!!:|||.!! !:! !||||||..!!.! GluPheAsnValGlyGly------LeuLeuIleProAlaThrPheProTyrAspThrAsn 36745 : GAGTTCAACGTAGGAGGA------CTACTTATCCCGGCCACATTTCCATACGACACGAAT : 36798 83 : LysLysProProProGlnTyrGluLeuThrIleIleSerGlnPheIleSerLeuSerThr : 102 |||!.. |||.!.||||||:!!||| :!!.!!||||||:!:.!! ! ! ! LysSer------ProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrValLeu 36799 : AAAAGT------CCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTG : 36852 103 : IleAlaIleLeuTyrIleGlyValAspAsnPhePheGlyLeuCysValPheHisIleCys : 122 ! !||||||! !||| ! !! !!|||!..||| !!!.!:!! !|||!!.||||||||| SerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHisIleCys 36853 : AGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGC : 36912 123 : GlyGlnLeuAsnIleMetArgSerArgLeuLysHis : 134 |||||||||!.!:!!:!:|||! ! !|||:!!:!! GlyGlnLeuThrValLeuArgIleAlaLeuGluAsn 36913 : GGCCAATTAACTGTTCTCCGCATTGCCCTCGAGAAT : 36950 vulgar: CbirOr59PN 2 134 . KQ414804.1 36569 36950 + 121 M 29 87 G 1 0 M 36 108 G 2 0 M 14 42 G 2 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36570 36950 121 + . gene_id 1 ; sequence CbirOr59PN ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36570 36950 . + . KQ414804.1 exonerate:protein2genome:local exon 36570 36950 . + . insertions 0 ; deletions 5 KQ414804.1 exonerate:protein2genome:local similarity 36570 36950 121 + . alignment_id 1 ; Query CbirOr59PN ; Align 36570 3 87 ; Align 36657 33 108 ; Align 36765 71 42 ; Align 36807 87 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr59PN Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 2 -> 133 Target range: 31131 -> 31515 3 : IleIleLysMetIleValGluAspTrpLeuLysSerLysThrIleTyrGluLysAsnAla : 22 :!!|||||| .!! !!!:|||||| !! |||!:!||| ||||||.....! ValIleLysSerPheTyrAspAspTrpLysThrSerArgThrLysGluGluLysGluThr 31132 : GTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACcaaggaggagaaggagacC : 31189 23 : MetMetLysTrpAlaLeuArgAlaArg<->IleIleIleThrCysThrTyrLeuValIle : 41 |||:!!||| ! ||| ! !|||!:! ||| !||| !|||:!! |||..!:!: MetLeuLysArgAlaLysPheAlaLysGlnIleSerIleTrpCysSerValLeuThrLeu 31190 : ATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGGTGCTCAGTATTAACCTTG : 31249 42 : ValLeuAlaPheIleLeuLeuPheGlyMetProIleIleGlyLysSerMetAlaLeuThr : 61 ..!:!!!.! !:!!! !||| ! ! !! ||| ! ! ..!:!:! ! !.!! ThrMetValThrValTyrLeuSerLeuArgAlaTrpIleIleTyrGlnLeuAspArgAla 31250 : ACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATCTACCAGCTTGATAGGGCA : 31309 62 : ProAsnIleThrAspSerGlyLysSerMetLeuMetProThrTyrTyrIleTyrAspVal : 81 !.!.! ! !||| ::: !:!:||| ||| !|||!:! !!:!|||:!! AsnGlnLysGlnAsp------ArgLeuLeuLeuTyrProGlyTyrPheProPheAspIle 31310 : AACCAGAAACAGGAT------CGTCTGCTCCTGTACCCTGGCTATTTTCCCTTCGATATT : 31363 82 : ThrLysLysProProProGlnTyrGluLeuThrIleIleSerGlnPheIleSerLeuSer : 101 :::||| ! ! ! !! !|||! !.!!.!!||| ! :!!:!! !! ! ------ArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeuAlaAlaTyr 31364 : ------CGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCAGCGTAT : 31417 102 : ThrIleAlaIleLeuTyrIleGlyValAspAsnPhePheGlyLeuCysValPheHisIle : 121 :!! !!.!||| !|||! ! !||||||!..|||.!!!.!:!! :!!.!.|||||| SerAlaValIleSerTyrThrThrValAspThrPheIleAlaMetLeuIleMetHisIle 31418 : TCCGCTGTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATAATGCACATA : 31477 122 : CysGlyGlnLeuAsnIleMetArgSerArgLeuLys : 133 |||||||||!!!.!.|||:!!|||..!!:!|||::! CysGlyGlnPheGluIleLeuArgGlnLysLeuArg 31478 : TGCGGACAATTTGAGATACTGAGACAGAAATTACGA : 31515 vulgar: CbirOr59PN 2 133 . KQ414804.1 31131 31515 + 104 M 29 87 G 0 3 M 35 105 G 2 0 M 13 39 G 2 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31132 31515 104 + . gene_id 2 ; sequence CbirOr59PN ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31132 31515 . + . KQ414804.1 exonerate:protein2genome:local exon 31132 31515 . + . insertions 3 ; deletions 4 KQ414804.1 exonerate:protein2genome:local similarity 31132 31515 104 + . alignment_id 2 ; Query CbirOr59PN ; Align 31132 3 87 ; Align 31222 32 105 ; Align 31327 69 39 ; Align 31366 84 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr59PN Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 66 -> 130 Target range: 44862 -> 45048 67 : SerGlyLysSerMetLeuMetProThrTyrTyrIleTyrAspValThrLysLysProPro : 86 ||||||! !!!:!:|||.!.! !.!!|||!:! !|||||| !.. ! ! ! SerGlyThrArgLeuLeuPheArgAlaTyrPheProTyrAsp------SerAspValSer 44863 : AGCGGCACCAGACTACTCTTCCGTGCTTATTTCCCTTACGAC------AGCGATGTCAGT : 44914 87 : ProGlnTyrGluLeuThrIleIleSerGlnPheIleSerLeuSerThrIleAlaIleLeu : 106 |||.!.||||||!!!|||:!:|||:!!|||.!!|||:!! !! ! ! !|||! ! ! ProAsnTyrGluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThr 44915 : CCAAATTACGAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACA : 44974 107 : TyrIleGlyValAspAsnPhePheGlyLeuCysValPheHisIleCysGlyGlnLeuAsn : 126 |||! !!.!||||||!.!|||.!!! !:!!! :!!.!.|||:!!||||||||||||::: TyrThrAlaValAspThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeuSer 44975 : TACACAGCCGTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCG : 45034 127 : IleMetArgSer : 130 ! !:!!|||!:! AsnLeuArgAsn 45035 : AATTTGAGAAAC : 45048 vulgar: CbirOr59PN 66 130 . KQ414804.1 44862 45048 + 104 M 14 42 G 2 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44863 45048 104 + . gene_id 3 ; sequence CbirOr59PN ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44863 45048 . + . KQ414804.1 exonerate:protein2genome:local exon 44863 45048 . + . insertions 0 ; deletions 2 KQ414804.1 exonerate:protein2genome:local similarity 44863 45048 104 + . alignment_id 3 ; Query CbirOr59PN ; Align 44863 67 42 ; Align 44905 83 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr58NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 90 -> 224 Target range: 36560 -> 36953 91 : LeuMetProLeuIleAsnMetIleValGluAspTrpIleLysValLysThrGluGlnGlu : 110 |||:!: !|||!!:!:!...||| !!!!:|||||| :!! !! !!||| !!!: LeuValPheLeuMetSerGlnIlePheAspAspTrpAlaGluProIleProGluValAsp 36561 : CTAGTATTCTTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTGGAT : 36618 111 : ArgGluIleMetIleLysGlnAlaLysThrAlaArgMetIleValMetPheGlyGlyIle : 130 |||.!.! |||:!:||| ||||||! !::!||||||||| !!!: !! !!..!||| ArgHisThrMetLeuLysThrAlaLysIleSerArgMetIleSerIleValCysSerIle 36619 : CGCCACACGATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTCTGTTCTATC : 36678 131 : MetMetThrLeuAlaSerIleIleLeuIleIleProProCysPheGlyTyrSerMetArg : 150 :!!|||! !!.!! !:!!:!: !.!!:!: !!! ! .!! !! !||||||!:! ---LeuThrTyrValMetValLeuAlaPheLeuSerLeuGlnIleTrpSerSerMetGln 36679 : ---CTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGCAGCATGCAA : 36735 151 : TyrLeuThrAsnLeuThrAspSerGlyLysProLeuLeuLeuGlnThrTyrTyrLeuArg : 170 !! !:!!.!.!!!!.!! .!!||| ||||||:!!! !.!! !:!! ! ! AsnThrSerGluPheAsnValGlyGly------LeuLeuIleProAlaThrPheProTyr 36736 : AACACCTCGGAGTTCAACGTAGGAGGA------CTACTTATCCCGGCCACATTTCCATAC : 36789 171 : AspMetThrGluSerProTyrPheGluIleAlaPheIleAlaGlnAlaThrSerIleIle : 190 |||! !!.!:!!|||||| !!!:!||||||.!!!:::!!!.!||| !..!.!!! !:!: AspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrVal 36790 : GACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTG : 36849 191 : ValAlaAlaIleSerTyrThrGlyIleAspAsnPheLeuSerValValIlePheHisIle : 210 :!!::!||||||!!!|||:!! !!.!!|||!..|||:!!:!!|||:!!:!:!!.|||||| LeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHisIle 36850 : TTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATA : 36909 211 : CysAlaGlnLeuAspIleLeuLysGlyArgLeuLeuAsnLeu : 224 |||!.!|||||| !:!!|||::: ! !||| !|||||| CysGlyGlnLeuThrValLeuArgIleAlaLeuGluAsnLeu 36910 : TGCGGCCAATTAACTGTTCTCCGCATTGCCCTCGAGAATCTT : 36953 vulgar: CbirOr58NTE 90 224 . KQ414804.1 36560 36953 + 152 M 40 120 G 1 0 M 28 84 G 2 0 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36561 36953 152 + . gene_id 1 ; sequence CbirOr58NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36561 36953 . + . KQ414804.1 exonerate:protein2genome:local exon 36561 36953 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 36561 36953 152 + . alignment_id 1 ; Query CbirOr58NTE ; Align 36561 91 120 ; Align 36681 132 84 ; Align 36765 162 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr58NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 87 -> 224 Target range: 31113 -> 31521 88 : LysLysGluLeuMetProLeuIleAsnMetIleValGluAspTrpIleLysValLysThr : 107 ...||| .!!! !|||:!!|||!!. .!! !!!:||||||! !! !!:!||| AsnLysAlaPheLysProValIleLysSerPheTyrAspAspTrpLysThrSerArgThr 31114 : aacaaagcttTCAAGCCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACc : 31171 108 : GluGlnGluArgGluIleMetIleLysGlnAlaLysThrAlaArgMetIleValMetPhe : 127 ::::::|||:::||| !|||:!:|||::!|||||| !|||!:!...||| !!!:!:: LysGluGluLysGluThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIleTrp 31172 : aaggaggagaaggagacCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGG : 31231 128 : GlyGlyIleMet<->MetThrLeuAlaSerIleIleLeuIleIleProProCysPheGly : 146 !!..!:!!:!: :!!|||:!!!.!!!!:!! !|||! !:!!! ! !!!! .!! ! CysSerValLeuThrLeuThrMetValThrValTyrLeuSerLeuArgAlaTrpIleIle 31232 : TGCTCAGTATTAACCTTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATC : 31291 147 : TyrSerMetArgTyrLeuThrAsnLeuThrAspSerGlyLysProLeuLeuLeuGlnThr : 166 |||..!:!: ! !!.!.!. ! !||| :::! !||||||! !! ! TyrGlnLeuAspArgAlaAsnGlnLysGlnAsp------ArgLeuLeuLeuTyrProGly 31292 : TACCAGCTTGATAGGGCAAACCAGAAACAGGAT------CGTCTGCTCCTGTACCCTGGC : 31345 167 : TyrTyrLeuArgAspMetThrGluSerProTyrPheGluIleAlaPheIleAlaGlnAla : 186 |||!:!! ! !|||!!: ! !! ! ! .!. ! .!! !.!!!.!|||!.! TyrPheProPheAspIleArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnVal 31346 : TATTTTCCCTTCGATATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTG : 31405 187 : ThrSerIleIleValAlaAlaIleSerTyrThrGlyIleAspAsnPheLeuSerValVal : 206 !:!! ! !|||!.!|||||||||||| !:!:|||!..|||:!!:!!:!!:!! LeuAlaAlaTyrSerAlaValIleSerTyrThrThrValAspThrPheIleAlaMetLeu 31406 : CTCGCAGCGTATTCCGCTGTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTG : 31465 207 : IlePheHisIleCysAlaGlnLeuAspIleLeuLysGlyArgLeuLeuAsnLeu : 224 |||.!.|||||||||!.!|||!!!!!:||||||!:! !!:!|||! !!..||| IleMetHisIleCysGlyGlnPheGluIleLeuArgGlnLysLeuArgArgLeu 31466 : ATAATGCACATATGCGGACAATTTGAGATACTGAGACAGAAATTACGAAGGCTG : 31521 vulgar: CbirOr58NTE 87 224 . KQ414804.1 31113 31521 + 139 M 44 132 G 0 3 M 26 78 G 2 0 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31114 31521 139 + . gene_id 2 ; sequence CbirOr58NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31114 31521 . + . KQ414804.1 exonerate:protein2genome:local exon 31114 31521 . + . insertions 3 ; deletions 2 KQ414804.1 exonerate:protein2genome:local similarity 31114 31521 139 + . alignment_id 2 ; Query CbirOr58NTE ; Align 31114 88 132 ; Align 31249 132 78 ; Align 31327 160 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr58NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 324 -> 377 Target range: 51909 -> 52319 325 : AlaThrTyrGluTyrAlaTrpTyrSerLeuLysProAsnGlnAlaLysAspLeuMetLeu : 344 |||.!!|||!!:! !! !||||||!:!|||...|||!!..!.|||||| |||:!::!! AlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLysAsnAlaLysLeuLeuLeuIle 51910 : GCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTGCTACTAATT : 51967 345 : IleMetIleArgAlaGluLysProLeuTyrIleThrAlaGlyArgIlePheProMetThr : 364 |||||| !||||||..! !|||||| ! |||||||||||||||.!! ! !!.!.||| IleMetArgArgAlaArgLeuProLeuGlnIleThrAlaGlyArgPheAlaThrPheThr 51968 : ATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCAGGTAGATTTGCTACTTTCACT : 52027 365 : LeuSerMetPheCysSer >>>> Target Intron 1 >>>> LeuIleLysThrS : 375 |||! !:!!!:!! ..! 251 bp :!!:!!||||||| LeuMetLeuTyrSerGln++ ++IleLeuLysThrS 52028 : CTGATGCTGTATTCACAGgt.........................agATTTTAAAAACCT : 52311 376 : erAlaGly : 377 ||!.!||| erValGly 52312 : CGGTGGGA : 52319 vulgar: CbirOr58NTE 324 377 . KQ414804.1 51909 52319 + 130 M 46 138 5 0 2 I 0 247 3 0 2 M 7 21 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51910 52319 130 + . gene_id 3 ; sequence CbirOr58NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51910 52047 . + . KQ414804.1 exonerate:protein2genome:local exon 51910 52047 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 52048 52049 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 52048 52298 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 52297 52298 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 52299 52319 . + . KQ414804.1 exonerate:protein2genome:local exon 52299 52319 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51910 52319 130 + . alignment_id 3 ; Query CbirOr58NTE ; Align 51910 325 138 ; Align 52299 371 21 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr62PN Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 0 -> 221 Target range: 194174 -> 194831 1 : AlaIleGluLeuAsnArgLeuSerLeuThrLeuPheGlyValTrpProLysAsnAsnG : 20 |||:!!..!:!! !:! ! !||||||! !.!!|||:!!||||||!:!.!.:!!. AlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProArgGluAspS 194175 : GCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAAGGGAGGATT : 194232 21 : luThrLysGlnAsnLysLeuMetSerAspIleArgValIleIleLeuLeuThrValIl : 39 .. !:::.!.!.. ! !:!!! !! ! !! !! !:!::!!!!! !.!:! erLeuArgAspArgValArgLeuPheAlaGlnThrGlyValValPhe------AlaLe 194233 : CTCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTTC------GCTTT : 194283 40 : eLeuTrpIleCysIleIleProSerLeuHisSerLeuLeuLysSerCysAspAspIle : 58 ::!!!! .!! :!::!!||| !:!! !! ! !! ! ..!|||!!:|||:!: uMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCysGluAspLeu 194284 : GATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAGGATCTG : 194340 59 : MetLeuThrIleAspAsnLeuGlnIleThrLeuProLeuLeuMetAlaValMetLysL : 78 ! ! ! !!!: ! :!! ! !:!! ! !|||:!!|||:!!!!:|||! ThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleIleLysP 194341 : ACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCATCAAGT : 194400 79 : euHisAsnIleTrpGlnLysArgTyrAspValLeuProLeuLeuAsnMetIleLysAs : 97 !! !..!!: !!!.||| ! !!::!! ! !! !||| !!!::!! heTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGluMetGluTh 194401 : TCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGATGGAGAC : 194457 98 : pAspTrpLeuArgProLysThrSerGluGluArgAsnValMetIleLysGlnAlaGln : 116 .!.!:: ! ! !:!! !..!|||!!:|||.!.||||||! !!. |||:!! rGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsnCysAlaLys 194458 : GCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGCGCGAAA : 194514 117 : IleAlaArgIleLeuThrLeuLeuGlyCysCysIleValGluIleSerValIleIleA : 136 |||!.!|||.!!!!!||| !||| !! ! :!! ! ! !.!!!.!:!: IleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProT 194515 : ATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTTTGCCGT : 194574 137 : laSerIleLeuProIleCysGlyIleSerMetIleTyrArgThrAsnArgThrAspPr : 155 ! !|||:!!! ! ! ! ..!! !||| !!:! !:!!!.!!:! !! yrHisIleIleLeuProLeuMetSerGluArgIleValLysGluAspAsnSerThrGl 194575 : ACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAACAGTACTCA : 194631 156 : oGlyUnkLeuPheProLeuGlnThrTyrTyrLeuTyrAspValAsnAsnSerProLeu : 174 ! ! ||| !|||...!.!||| !!!!!:!! :!!.!.:!!||||||:!! nIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAspSerProIle 194632 : GATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGACTCGCCGATT : 194688 175 : TyrGluLeuThrPheValLeuGlnSerPheSerMetValLeuAlaGlyIleMetTyrT : 194 ||||||:!!|||||||||! !|||! !.!.! !! !:!! ! ! ! ! !! TyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuSerThrAsnC 194689 : TACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGTCGACGAATT : 194748 195 : hrSerThrAspThrPheMetSerLeuLeuIlePheHisValCysGlyHisLeuGluAs : 213 !.!!! ! !!!:!!!.:!::!! !:!!|||.!.||| !|||||| !!!||| ysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGlyLeuPheGluVa 194749 : GTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTTGTTCGAAGT : 194805 214 : nLeuLysAlaArgIleArgAsnLeu : 221 !!.. !|||!!:..!!.!:!! lThrSerArgArgMetGluThrIle 194806 : GACCAGCAGAAGGATGGAGACTATT : 194831 vulgar: CbirOr62PN 0 221 . KQ414889.1 194174 194831 + 112 M 35 105 G 2 0 M 184 552 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194175 194831 112 + . gene_id 1 ; sequence CbirOr62PN ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194175 194831 . + . KQ414889.1 exonerate:protein2genome:local exon 194175 194831 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 194175 194831 112 + . alignment_id 1 ; Query CbirOr62PN ; Align 194175 1 105 ; Align 194280 38 552 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr62PN Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 0 -> 221 Target range: 226933 -> 227599 1 : AlaIleGluLeuAsnArgLeuSerLeuThrLeuPheGlyValTrpProLysAsnAsnG : 20 ::!|||:!!|||||||||! ! !|||! !! !.!!|||:!!||||||..!:::..!: SerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgL 226934 : AGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCA : 226991 21 : luThrLysGlnAsnLysLeuMetSerAspIleArgValIleIleLeuLeuThrValIl : 39 !!!:!...!:!! ! ! ! !..! !:!! !.!!|||! ! !!.!:! ysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLe 226992 : AAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCT : 227048 40 : eLeuTrpIleCysIleIleProSerLeuHisSerLeuLeuLysSerCysAspAspIle : 58 ::!! ! .!! :!::!! !!||| ! ! !:!!:!! !..! ! ! ! ! uMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAla 227049 : GATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCT : 227105 59 : MetLeuThrIleAspAsnLeuGlnIleThrLeuProLeuLeuMetAlaValMetLysL : 78 !|||:!: ! ! :!! ! !! ! !!!! !|||:!!:!!:!:|||! TyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuLysT 227106 : TACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGT : 227165 79 : euHisAsnIleTrpGlnLysArgTyrAspValLeuProLeuLeuAsnMetIleLysAs : 97 ! !! :!: ! ! ..! !!|||:!!||| !! !:!!.!. !|||||| yrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIleLysTr 227166 : ACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATG : 227222 98 : pAspTrpLeuArgProLysThrSerGluGluArgAsnValMetIleLysGlnAlaGln : 116 |||||| !!.! !!:! ! !|||!!:||||||||||||:!:! ! ! ||| ! pAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyr 227223 : GGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTAT : 227279 117 : IleAlaArg<->IleLeuThrLeuLeuGlyCysCysIleValGluIleSerValIleI : 135 !!.!||| :!::!!|||:!!! ! !! !! !:!! !!... |||.... TyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheValPheP 227280 : TACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttt : 227339 136 : leAlaSerIleLeuProIleCysGlyIleSerMetIleTyrArgThrAsnArgThrAs : 154 .. ! !:!!:!!|||||| !!.! !|||:!: ! ..! !...!.! !.. heTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSe 227340 : tctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAG : 227396 155 : pProGlyUnkLeuPheProLeuGlnThrTyrTyrLeuTyrAspValAsnAsnSerPro : 173 ! ! ! :!! !! ! !! ! !:!! !||||||..! !!|||||| rTyrIleGlnMetProPheProPheProLysIleIleAlaAspValArgTyrSerPro 227397 : TTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCT : 227453 174 : LeuTyrGluLeuThrPheValLeuGlnSerPheSerMetValLeuAlaGlyIleMetT : 193 !!! !!|||:!! !||| !:!!|||! ! ! !!! :!!:!! ! ! !:!: PheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuHisGlyValT 227454 : TTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCA : 227513 194 : yrThrSerThrAspThrPheMetSerLeuLeuIlePheHisValCysGlyHisLeuGl : 212 :!!:!!.!! !!:!.!. :!!|||||| !!|||!.!||||||!!.:!!|| hrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGl 227514 : CGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGA : 227570 213 : uAsnLeuLysAlaArgIleArgAsnLeu : 221 | ||| !:!! !!:!: !!:!!||| uValLeuValSerTrpLeuGlyHisLeu 227571 : GGTGTTGGTGTCCTGGCTGGGACATTTG : 227599 vulgar: CbirOr62PN 0 221 . KQ414889.1 226933 227599 + 105 M 119 357 G 0 3 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226934 227599 105 + . gene_id 2 ; sequence CbirOr62PN ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226934 227599 . + . KQ414889.1 exonerate:protein2genome:local exon 226934 227599 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226934 227599 105 + . alignment_id 2 ; Query CbirOr62PN ; Align 226934 1 357 ; Align 227294 120 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr61NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 4 -> 222 Target range: 226933 -> 227590 5 : AlaValGlnLeuAsnArgPheSerLeuLysLeuLeuGlyLeuTrpProGluGluAlaA : 24 ::!:!!||||||||||||!:: !||||||! !||||||:!!||||||..!..! ! SerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgL 226934 : AGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCA : 226991 25 : laSerLeuGln<->AspArgLeuAsnSerAsnLeuArgLeuPheGlyValPheIleLe : 42 !|||! !!:! ! |||! ! !||| |||! ! !||| ! !!:! || ysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLe 226992 : AAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCT : 227048 43 : uIleAsnGlyValCysThrValProSerLeuHisLeuLeuLeuLysIleTrpGlyAsp : 61 |!!:!:! !! !! ..! ! !.!!|||:!!:!!:!!|||:!!:!: |||! ! uMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAla 227049 : GATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCT : 227105 62 : IleAsnAlaMetMetAspAsnPheValPheThrLeuProLeuLeuThrValSerValL : 81 !|||.!!:!!! ! ! ! !.!.:!!!!! ! !:!!:!!:!! :!!| TyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeu---LeuL 227106 : TACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTC---CTCA : 227162 82 : ysLeuLeuIleLeuTrpTrpLysArgGluAlaLeuSerSerLeuMetThrMetIleAl : 100 ||! !! !!!:||| !!:: ! ..!!!:! !:!! !..!! !:!: ! !||| ysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIleLy 227163 : AGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAA : 227219 101 : aHisAspTrpIleLysSerLysSerLysAspGluArgAsnValMetIleArgCysAla : 119 ! ||||||! !!.! !!:!! ! !!!:!!:||||||||||||:!:! !! !||| sTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyrAla 227220 : ATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCG : 227276 120 : GlnAsnAlaArgLeuIleIleThrPheSerTyrIleValIlePheCysSerLeuIleI : 139 ! !!!.!||| !:!:||||||.!!!!! .!! !!:!!||| |||...:::. TyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheValP 227277 : TATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtat : 227336 140 : le<-><->LeuIleIleSerThrAlaPheGlyTyrThrValThrHisValThrAsnIl : 156 .. :!!:!!:!! !!! ! ! !||| !..!!.!|||.!.! ! !||| hePheTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGlyAsnHi 227337 : ttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCA : 227393 157 : eThrAspThrLysLysProLeuProLeuGlnGlyTyrTyrIleTyrAsnThrSerVal : 175 !!:! !!! !:!!! !|||!!!|||!!!! ! ! !||| !:!!..! !! ! sSerTyrIleGlnMetProPheProPhePro---LysIleIleAlaAspValArgTyr 227394 : CAGTTACATTCAGATGCCGTTTCCGTTTCCA---AAAATCATCGCTGACGTTCGTTAC : 227447 176 : SerProGlnPheGluLeuThrPhePheGlyGlnCysIleSerLeuThrMetValAlaL : 195 |||||| !|||:!! !|||! ! !|||! !:!!!!! !! !:!!:!! ! SerProPheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuHisG 227448 : AGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACG : 227507 196 : euSerTyrThrSerThrAspAsnPheLeuGlyLeuLeuValPheHisIleCysGlyGl : 214 ! ! :!!:!!.!! !!:!.!. !!.!||||||!.! !!||| !|||||||| lyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGl 227508 : GTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCA : 227564 215 : nLeuGluAsnLeuThrSerArgLeu : 222 |:!!||| |||..!||| !!||| nMetGluValLeuValSerTrpLeu 227565 : GATGGAGGTGTTGGTGTCCTGGCTG : 227590 vulgar: CbirOr61NTE 4 222 . KQ414889.1 226933 227590 + 124 M 23 69 G 0 3 M 51 153 G 1 0 M 60 180 G 0 6 M 27 81 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226934 227590 124 + . gene_id 1 ; sequence CbirOr61NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226934 227590 . + . KQ414889.1 exonerate:protein2genome:local exon 226934 227590 . + . insertions 9 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 226934 227590 124 + . alignment_id 1 ; Query CbirOr61NTE ; Align 226934 5 69 ; Align 227006 28 153 ; Align 227159 80 180 ; Align 227345 140 81 ; Align 227426 168 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr57NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 0 -> 218 Target range: 208206 -> 208860 1 : LeuGluTrpAlaIleGlyIleAsnArgPheThrLeuLysIleLeuGlyLeuTrpProA : 20 |||...!:: !:!! !!:!:||| !!::||||||||||||:!!|||! !|||||| LeuSerPheAsnValArgLeuAsnValTrpThrLeuLysIleIleGlySerTrpProA 208207 : CTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGA : 208264 21 : spGluArgLeuAsnArgGlnGlnArgPheLeuAlaAsnLeuArgAlaPheIleIlePh : 39 ...! ! !..! ! ! !..! ! ! !:!!:!!! ! ! !:!!:!! rgSerIleAspArgSerTrpLeuGluAsnSerGlnHisIleLeuLeuAsnValLeuSe 208265 : GATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAG : 208321 40 : eThrThrMetIleLeuValSerValIleProAlaTyrIleSerLeuMetArgValTrp : 58 ! ! !:!!:!! ! !!! !|||||||||.!! !!!:! ! !!!:! !||| rHisCysLeuLeuGlyPheIleValIleProThrGlyMetPheAlaIleLeuValVal 208322 : TCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTC : 208378 59 : GlyAspMetMetAlaIleIleAspAsnLeuGlnValThrLeuProCysSerIleAlaA : 78 ! !|||.!. ! ! !:!! ! ! !! !...!.! ! ! !! !! !!!:||| GluAspPheTyrAspGlnLeuLysIleCysSerAlaLeuSerPhePheMetMetAlaP 208379 : GAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGT : 208438 79 : laLeuLysIleIleIleMetTrpSerArgLysGluAspLeuThrProIleValAsnMe : 97 ! !||| !:!:|||||| !|||:!!! |||:!! ! ! !|||.!. heThrLysTyrValIleMetThrValArgGluGlyAspIleArgLysCysValGluTy 208439 : TCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTA : 208495 98 : tValValAlaAspTrpIleArgThrLysThrGluGluGluArgAspThrMetIleArg : 116 |||! !|||||||||! !!.!..!:!! !||||||!!:||| ! ! !|||:!: ! rValGluAlaAspTrpArgAsnValGluHisGluGluAspArgLysIleMetLeuAsp 208496 : CGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGAC : 208552 117 : GlnAlaArgIleAlaArgTrpIleValValPheGlyCysIleIleMetIleLeuGluI : 136 .!.|||!!!.!!|||||| :!::!!|||.!. !! ! !.!!||| ! !! : AsnAlaSerPheAlaArgLysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyV 208553 : AACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtg : 208612 137 : leIleIleIleValIleProProCysPheGlyTyrSerMetArgTyrLeuThrAsnIl : 155 ::|||... ||| !! ! .!! ! ..!! ! ! ! ! !..! alIlePheTyrTyrIleAlaLeuProLeuThrArgAspLysValValGluGluGlyGl 208613 : taattttctattacaTCGCTTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGG : 208669 156 : eThrAspLysProGlyLysProLeuLeuLeuGlnThrTyrTyrLeuArgAspThrThr : 174 !!.! ! ! ! !!!:!! !:!!! !! ! !! ! !:!:!!! !|||..! ! yAsnLeuThrTyrArgArgLeuValTyrProValProLysPheIleLeuAspValArg 208670 : CAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGA : 208726 175 : GluSerProTyrPheGluIleValPheValAlaGlnAlaIleAlaValValMetCysA : 194 ! |||||| !|||||| !!!:!..!!.!||| !:!::!!! ! !!:!:..! TyrSerProValAsnGluIlePheTyrThrValGlnLeuLeuSerGlyPheValAlaH 208727 : TACAGTCCTGTGAATGAGATTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTC : 208786 195 : laPheSerTyrThrAlaThrAspAsnPheMetGlyIleValIlePheHisIleCysAl : 213 ! !! ! ..!!.!.!! !..!!!. !.!:!::!! .!.||| |||!. isAsnIleThrValGlyAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGl 208787 : ATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGG : 208843 214 : aGlnMetGluIleLeu : 218 !|||:!!:!!|||||| yGlnLeuGlnIleLeu 208844 : ACAGCTGCAGATTTTG : 208860 vulgar: CbirOr57NTE 0 218 . KQ414889.1 208206 208860 + 111 M 218 654 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208207 208860 111 + . gene_id 1 ; sequence CbirOr57NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208207 208860 . + . KQ414889.1 exonerate:protein2genome:local exon 208207 208860 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208207 208860 111 + . alignment_id 1 ; Query CbirOr57NTE ; Align 208207 1 654 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr82 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 12 -> 228 Target range: 259769 -> 260420 13 : GluTrpAlaValLysLeuAsnArgAlaGlyLeuAsnLeuLeuGlyLeuTrpProAsnP : 32 !!:!::::!:!!:!!!!!|||||| ! !|||!!.! !:!!||| !|||||| ! AspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS 259770 : GACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTT : 259827 33 : roGlnGluSerAlaArg<->GluGluValIleSerAsnIleArgValLeuLeuThrLe : 50 !!......!!!.!!||| |||:!!:!!|||||| !|||! !:!!!!!:!! !! erSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTy 259828 : CATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTA : 259884 51 : uLeuValMetLeuThrLeuLeuValProCysValHisSerLeuIleLysThrAsnSer : 69 ! !..!!!:|||..! !|||:!!|||||||||! ! !:!!:!! !!!...! rSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGlu 259885 : CAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAG : 259941 70 : AspIleMetLeuThrIleAspAsnLeuGlnIleIleIleProIleLeuSerThrIleI : 89 ..!:!: :!!! !! ! ||| !:!!! !! ! !!! ! ! !| SerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysI 259942 : AGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTA : 260001 90 : leLysLeuProIlePheTrpTrpLysLysLysAlaPheThrSerIleValAsnMetIl : 108 ||!!.! ! !!! !!.! !! !!:! !:!! !.!. !||| !|||.!. :! leAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisVa 260002 : TTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGT : 260058 109 : eValGluAspTrpLeuLysSerThrAsnIleHisGluArgLysThrMetIleLysTrp : 127 :! !.!.|||||| !! ! !|||!.. ! !!:!:!!!...!|||:!:!:!!:: lGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyr 260059 : GGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATAC : 260115 128 : AlaLeuArgAlaArgIlePheIleThrCysSerTyrIleLeuIleThrIleGlyLeuI : 147 ||| ! !!.!||| !:!:!!.!!..!|||! ! !.!!..! ||| !: AlaLysPheGlyArg---TyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyV 260116 : GCGAAATTCGGCAGA---TACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAG : 260172 148 : leIlePhePheValIleGlyProIlePheGlyLysSerMetThrLeuThrSerAsnIl : 166 !!:!:! !||| !:!:! ! !!:!:!!..!!! !..!:!!! !! !..!.!!||| alLeuCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGl 260173 : TTCTGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGA : 260229 167 : eThrAspSerSerArgSerLeuThrLeuProThrTyr<->TyrIleTyrAspValThr : 184 ||| ! ! !!.! !||| !!! ! !!..!||| ! :!: :!!|||!.! uThrArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsn 260230 : GACGAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAAC : 260286 185 : LysArgProGlnTyrGluLeuThrIleIleSerGlnCysIleSerIleThrThrThrG : 204 ! !!!|||..! !!|||:!!..!:!!:!! !|||! !:!!||| ! !! !..!. AspSerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValA 260287 : GACAGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGA : 260346 205 : lyIleLeuTyrIleGlyIleAspAsnPhePheGlyLeuLeuValPheHisIleCysGl : 223 .! ! !:!!|||||| !!:!.!! !.!:!!|||..! !||| ||||| snSerSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGl 260347 : ATTCGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGG : 260403 224 : yGlnLeuAsnIleMet : 228 ||||||||||:!::!: yGlnLeuAsnValLeu 260404 : CCAGTTGAACGTGCTC : 260420 vulgar: CbirOr82 12 228 . KQ414889.1 259769 260420 + 137 M 25 75 G 0 3 M 95 285 G 1 0 M 45 135 G 0 3 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259770 260420 137 + . gene_id 1 ; sequence CbirOr82 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259770 260420 . + . KQ414889.1 exonerate:protein2genome:local exon 259770 260420 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 259770 260420 137 + . alignment_id 1 ; Query CbirOr82 ; Align 259770 13 75 ; Align 259848 38 285 ; Align 260133 134 135 ; Align 260271 179 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr82 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 2 -> 232 Target range: 232426 -> 233119 3 : ArgSerThrArgAsnLysLysGluAspPheGluTrpAlaValLysLeuAsnArgAlaG : 22 |||..!||| !||| ! !..!|||!:!|||!::::!:!!:!!:!!|||||| ! ArgAspThrLeuAsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpP 232427 : CGCGACACGTTGAACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGT : 232484 23 : lyLeuAsnLeuLeuGlyLeuTrpProAsnProGlnGluSerAlaArg<->GluGluVa : 40 !|||!..! !:!!||| !||||||..! ! !|||!!!:!!||| :!!:!!:! heLeuThrProMetGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLe 232485 : TTCTGACACCGATGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACT : 232541 41 : lIleSerAsnIleArgValLeuLeuThrLeuLeuValMetLeuThrLeuLeuValPro : 59 !:!!:!!!!.:!: ! !||| ! !! !! !:!!|||:!!:!!! !:!!|||||| uLeuAlaLysLeuLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValPro 232542 : ACTCGCGAAACTGTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCG : 232598 60 : CysValHisSerLeuIleLysThrAsnSerAspIleMetLeuThrIleAspAsnLeuG : 79 |||:!!! ! !:!!:!: !:!!!!!..!:!! ! !! !!!: ! ::!:!! CysIleLeuPheIleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleG 232599 : TGCATTCTGTTCATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCG : 232658 80 : lnIleIleIleProIleLeuSerThrIleIleLysLeuProIlePheTrpTrpLysLy : 98 !!!:! !! !.!!|||! ! ! !:!:!!.! ! ! !!!.! ! ||| lyProMetSerHisPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAl 232659 : GTCCTATGAGTCACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGC : 232715 99 : sLysAlaPheThrSerIleValAsnMetIleValGluAspTrpLeuLysSerThrAsn : 117 !!!.! !.!! !! ! !|||.!...!:!: !:!!||||||! !!!. !! !!!. aAsnAspIleLeuTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLys 232716 : GAACGACATCCTCTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAA : 232772 118 : IleHisGluArgLysThrMetIleLysTrpAlaLeuArgAlaArgIlePheIleThrC : 137 ! !.!.||| ! !|||:!:||| ||| !! !!.!||| .!. ! ! ProValHisArgAspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysI 232773 : CCCGTCCATCGTGATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCA : 232832 138 : ysSerTyrIleLeuIleThrIleGlyLeuIleIlePhePheValIleGlyProIlePh : 156 !:!! .!!! !!!: !! !|||:!! ! ! ! :!!:!! ! !:!! leAlaAlaPheCysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuAr 232833 : TCGCTGCGTTTTGCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCG : 232889 157 : eGlyLysSerMetThrLeuThrSerAsnIleThrAspSerSerArgSerLeuThrLeu : 175 ! !!..!!!.!. !:!! !!:!.!.! ! !...! !! !! !! !! ! ! ! gMetSerThrPheTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThr 232890 : TATGAGCACGTTCTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACG : 232946 176 : ProThrTyrTyrIleTyrAspValThrLysArgProGlnTyrGluLeuThrIleIleS : 195 ! ! ! :!: |||..!! ! !!!||| ! !!|||:!!! !.!!:!! PheTyrThrLysLeuMetAspThrArgPheSerProThrAsnGluIleMetPheValL 232947 : TTCTACACGAAGCTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTC : 233006 196 : erGlnCysIleSerIleThrThrThrGlyIleLeuTyrIleGlyIleAspAsnPhePh : 214 !||||||:!!||| !! !..!..! !:!! !:!:||| ! !..!!!. euGlnCysLeuSerGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGl 233007 : TACAGTGTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGG : 233063 215 : eGlyLeuLeuValPheHisIleCysGlyGlnLeuAsnIleMetArgAsnArgLeu : 232 !!.!:!!|||!.!.!.||| |||||||||||||||:!::!!! !:::!:!||| yAlaValLeuAlaMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeu 233064 : CGCTGTTCTAGCGATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTG : 233119 vulgar: CbirOr82 2 232 . KQ414889.1 232426 233119 + 129 M 35 105 G 0 3 M 195 585 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232427 233119 129 + . gene_id 2 ; sequence CbirOr82 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232427 233119 . + . KQ414889.1 exonerate:protein2genome:local exon 232427 233119 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232427 233119 129 + . alignment_id 2 ; Query CbirOr82 ; Align 232427 3 105 ; Align 232535 38 585 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr82 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 325 -> 379 Target range: 292380 -> 292542 326 : LeuMetThrGlnCysAsnGlyIleTyrTyrAlaValTyrAspTyrGluTrpTyrSerL : 345 :!!:!! !||| !!!:!! !||| :!!||| !|||||| |||||||||!:!| ValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnL 292381 : GTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATC : 292438 346 : euAspProLysGluAlaLysAspLeuIleLeuPheMetIleLysIleArgAspProIl : 364 || !::!:!!|||:::|||:!!:!!||| ! :!: !! !! !:! !!||||| euProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIl 292439 : TGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGAT : 292495 365 : eTyrPheThrAlaGlyLysIlePheProValThrMetAlaMetPhe : 379 | ! .!!|||||||||||||||||| !:!!:!!:!! !! ||| eLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPhe 292496 : CAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTT : 292542 vulgar: CbirOr82 325 379 . KQ414889.1 292380 292542 + 109 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292381 292542 109 + . gene_id 3 ; sequence CbirOr82 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292381 292542 . + . KQ414889.1 exonerate:protein2genome:local exon 292381 292542 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292381 292542 109 + . alignment_id 3 ; Query CbirOr82 ; Align 292381 326 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr82 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 12 -> 228 Target range: 262846 -> 263497 13 : GluTrpAlaValLysLeuAsnArgAlaGlyLeuAsnLeuLeuGlyLeuTrpPro<->A : 31 !!:!::::!:!!:!!:!!|||||| ! !|||!!.! !:!!||| !|||||| : AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 32 : snProGlnGluSerAlaArgGluGluValIleSerAsnIleArgValLeuLeuThrLe : 50 :! !!..! ||| !! !|||..!:!!|||!!! !:!! !:!!:!!:!! !! erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 51 : uLeuValMetLeuThrLeuLeuValProCysValHisSerLeuIleLysThrAsnSer : 69 !! !:!!!!:|||:!! !:!!:!!|||! !:!!! ! !:!!:!! ! ! !..! rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 70 : AspIleMetLeuThrIleAspAsnLeuGlnIleIleIleProIleLeuSerThrIleI : 89 :!!.!! :!!! !:!:.!. !||| :!! !! ! !!! ! !!!:| AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 90 : leLysLeuProIlePheTrpTrpLysLysLysAlaPheThrSerIleValAsnMetIl : 108 ||!!.! ! !! !!.! ! ! !..|||! !.!. !.!! !|||.!. :! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 109 : eValGluAspTrpLeuLysSerThrAsnIleHisGluArgLysThrMetIleLysTrp : 127 : !|||||||||! !! !|||!..:!:.!.!!:!:!:::! !|||:!:||| lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 128 : AlaLeuArgAlaArgIlePheIleThrCysSerTyrIleLeuIleThrIleGlyLeuI : 147 ||| ! !!.!||| !:!:!:.!!..!|||! ! :!!.!!! ! ! ! !| AlaLysTyrGlyArg---TyrValAlaAlaSerCysAlaIlePheMetGlnThrSerI 263193 : GCGAAATACGGCCGC---TACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCA : 263249 148 : leIlePhePheValIleGlyProIlePheGlyLysSerMetThrLeuThrSerAsnIl : 166 ||!!:! ! !:!!! ! !! ||| !! !..!:!!! ! ! !.!!||| leMetCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGl 263250 : TCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGA : 263306 167 : eThrAspSerSerArgSerLeuThrLeuProThrTyr<->TyrIleTyrAspValThr : 184 ||| ! ! !|||! !||| !!! !|||..!||| ! ||| ! ||| ! uThrArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAsp 263307 : GACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGAC : 263363 185 : LysArgProGlnTyrGluLeuThrIleIleSerGlnCysIleSerIleThrThrThrG : 204 ! !!.!||| ! !!|||:!! !:!! !!!!|||! !:!:||| ! !! !..! ThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValT 263364 : ACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCA : 263423 205 : lyIleLeuTyrIleGlyIleAspAsnPhePheGlyLeuLeuValPheHisIleCysGl : 223 ! ! !:!!||| ! !..!.!. !.!:!!!!!!.! !||| !||||| hrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGl 263424 : CCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGG : 263480 224 : yGlnLeuAsnIleMet : 228 ||||||||||:!::!! yGlnLeuAsnValLeu 263481 : ACAGTTGAACGTGTTG : 263497 vulgar: CbirOr82 12 228 . KQ414889.1 262846 263497 + 104 M 18 54 G 0 3 M 102 306 G 1 0 M 45 135 G 0 3 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 263497 104 + . gene_id 4 ; sequence CbirOr82 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262847 263497 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263497 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 262847 263497 104 + . alignment_id 4 ; Query CbirOr82 ; Align 262847 13 54 ; Align 262904 31 306 ; Align 263210 134 135 ; Align 263348 179 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr82 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 10 -> 232 Target range: 278567 -> 279245 11 : AspPheGluTrpAlaValLysLeuAsnArgAlaGlyLeuAsnLeuLeuGlyLeuTrpP : 30 |||!:: !!::::!|||:!!:!!|||||| ! !|||!!.! !:!!|||:!!|||| AspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpP 278568 : GATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGC : 278625 31 : ro<->AsnProGlnGluSerAlaArgGluGluValIleSerAsnIleArgValLeuLe : 48 || !:!! ! ! !!!!.!! !|||:!!:!!! !||| :!!! !!.!|||:! roLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIl 278626 : CTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAAT : 278682 49 : uThrLeuLeuValMetLeuThrLeuLeuValProCys<->ValHisSerLeuIleLys : 66 !!:!! !!!!:!!!!: ! !||||||||||||||| :!! !!!!:!!:!! ! eSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAsp 278683 : CAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGAC : 278739 67 : ThrAsnSerAspIleMetLeuThrIleAspAsnLeuGlnIleIleIleProIleLeuS : 86 ! !!.!.!!|||:!! !! !||| ! ! :!! !:!!! ! ! ! !! LysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrM 278740 : AAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGA : 278799 87 : erThrIleIleLysLeuProIlePheTrpTrpLysLysLysAlaPheThrSerIleVa : 105 !.!!! ||||||! ! !|||.!. !! !::: !.!! !!.! !|| etAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysVa 278800 : TGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGT : 278856 106 : lAsnMetIleValGluAspTrp<-><-><->LeuLysSerThrAsnIleHisGluArg : 121 |||| ||| ! !|||||| |||..!! ! ... ...|||||| lAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArg 278857 : GAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagaga : 278913 122 : LysThrMetIleLysTrpAlaLeuArgAlaArgIlePheIleThrCysSerTyrIleL : 141 ::: |||! ! ! ||| !! !!.!||| !!!. ! !! !||| ! !! GluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyP 278914 : gagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTT : 278973 142 : euIleThrIleGlyLeuIleIlePhePheValIleGlyProIlePheGlyLysSerMe : 160 !!!!: ! !||| !:!!.!!!:! !!.!:!: !|||:!:|||!.! ! !!! heMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgTh 278974 : TCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCAC : 279030 161 : tThrLeuThrSerAsnIleThrAspSerSerArgSerLeuThrLeuProThrTyrTyr : 179 ! !:!!! !..!||| !|||! !!!|||!:!:!!!!! !!:!! ! ! ! rGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIle---TyrArgGly 279031 : GGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATC---TATCGCGGC : 279084 180 : IleTyrAspValThrLysArgProGlnTyrGluLeuThrIleIleSerGlnCysIleS : 199 :!! !||| ! !! !!!|||..!!:!|||:!!..! !.!!! !||||||:!:: LeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuA 279085 : CTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGG : 279144 200 : erIleThrThrThrGlyIleLeuTyrIleGlyIleAspAsnPhePheGlyLeuLeuVa : 218 !! !..! ! ! :!! !:!!||| ! !!:!!!..!!!.!:!!!!!|| laAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheVa 279145 : CCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGT : 279201 219 : lPheHisIleCysGlyGlnLeuAsnIleMetArgAsnArgLeu : 232 |.!.|||:!!|||||||||!!!!..|||:!: !!..!:!||| lMetHisValCysGlyGlnPheArgIleLeuValThrLysLeu 279202 : CATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTG : 279245 vulgar: CbirOr82 10 232 . KQ414889.1 278567 279245 + 100 M 20 60 G 0 3 M 30 90 G 0 3 M 52 156 G 0 9 M 63 189 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278568 279245 100 + . gene_id 5 ; sequence CbirOr82 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278568 279245 . + . KQ414889.1 exonerate:protein2genome:local exon 278568 279245 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278568 279245 100 + . alignment_id 5 ; Query CbirOr82 ; Align 278568 11 60 ; Align 278631 31 90 ; Align 278724 61 156 ; Align 278889 113 189 ; Align 279078 177 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr86NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 4 -> 225 Target range: 226933 -> 227599 5 : AlaThrGluLeuAsnArgIleSerLeuThrPhePheGlyValTrpProGluAsnHisG : 24 ::!! !:!!||||||||| !|||! ! .!!|||:!!||||||..!:::!.!: SerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgL 226934 : AGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCA : 226991 25 : luThrLysGlnLysAsnLeuIleSerGluIleArgValIleIleAlaCysAsnLeuLe : 43 !!!:!...!:!! !... ! !! !... !:!! !.!! !||| !! !|| ysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLe 226992 : AAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCT : 227048 44 : uIleTrpMetTrpLeuIleProSerLeuHisSerLeuLeuLysIleTyrAspAspIle : 62 |!!: ! .!. !|||:!! !!||| ! ! !:!!:!! ! ! ! ! ! uMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAla 227049 : GATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCT : 227105 63 : ThrSerAlaIleAspAsnLeuGlnTyrThrLeuProLeuLeuIleAlaLeuMetLysL : 82 !!:!.!!:!: ! ! :!! ! !! ! !!!! !!!::!!|||:!:|||! TyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuLysT 227106 : TACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGT : 227165 83 : euPheIleIleArgGlnLysLysTyrAspIleLeuLeuValLeuAsnMetIleLysAs : 101 !! !!!::!:! ! ! :!! !!||||||||| ! !:!!.!. !|||||| yrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIleLysTr 227166 : ACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATG : 227222 102 : nAspTrpLeuLysProMetThrSerGluGluArgAsnValMetIleLysGlnAlaArg : 120 |||||| !!!. !! ! !|||!!:||||||||||||:!:! ! ! ||| ! pAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyr 227223 : GGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTAT : 227279 121 : IleAlaArg<->IleLeuThrLeuLeuSerCysLeuValValGluMetPheAlaIleI : 139 !!.!||| :!::!!|||:!!! !!!!! !!!!||| !!... |||....... TyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheValPheP 227280 : TACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttt : 227339 140 : leThrSerIleLeuProIlePheGlyIleSerMetArgTyrArgThrAsnArgThrAs : 158 .. ! !:!!:!!|||||| !!.! !|||:!: ! ..! !...!.! !.. heTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSe 227340 : tctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAG : 227396 159 : pProGlyLysIleLeuProLeuGlnThrTyrTyrLeuTyrAspValAsnAsnSerPro : 177 ! ! !:!!!!:! ! !! ! !! ! !:!! !||||||..! !!|||||| rTyrIleGlnMetProPheProPheProLysIleIleAlaAspValArgTyrSerPro 227397 : TTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCT : 227453 178 : LeuTyrGluLeuThrPheValLeuGlnSerLeuSerMetIleValValAlaThrIleT : 197 !!! !!|||:!! !||| !:!!|||! !:!!!!! ||||||:!! ! !:!! PheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuHisGlyValT 227454 : TTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCA : 227513 198 : yrThrGlyProAspThrPheMetSerLeuLeuValPheHisIleCysGlyGlnLeuLy : 216 :!!!.! !! !!:!.!. :!!||||||!.! !!||| !|||||||||:!!:! hrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGl 227514 : CGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGA : 227570 217 : sAsnLeuLysAlaArgIleArgAsnLeu : 225 ! ||| !:!! !!:!: !!:!!||| uValLeuValSerTrpLeuGlyHisLeu 227571 : GGTGTTGGTGTCCTGGCTGGGACATTTG : 227599 vulgar: CbirOr86NTE 4 225 . KQ414889.1 226933 227599 + 125 M 119 357 G 0 3 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226934 227599 125 + . gene_id 1 ; sequence CbirOr86NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226934 227599 . + . KQ414889.1 exonerate:protein2genome:local exon 226934 227599 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226934 227599 125 + . alignment_id 1 ; Query CbirOr86NTE ; Align 226934 5 357 ; Align 227294 124 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr86NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 40 -> 225 Target range: 303301 -> 304794 41 : AsnLeuLeuIleTrpMetTrpLeuIleProSerLeuHisSerLeuLeuLysIleTyrA : 60 ||||||:!!:!!! .!. :!!||||||!!!:!!! !:!!:!! ! ! AsnLeuValLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnL 303302 : AATTTGGTTCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAA : 303359 61 : spAspIleThrSerAlaIleAspAsnLeuGlnTyrThrLeuProLeuLeuIleAlaLe : 79 ! |||! ! !! ! !:!: ! !!! ! ! !! !||||||:!!|| ysAspThrIleIleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLe 303360 : AGGATACGATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTT : 303416 80 : uMetLysLeuPheIleIleArgGlnLysLysTyrAspIleLeuLeuValLeuAsnMet : 98 |||||||! !!:: !:!! ! !::!||| ||| ! ! !:!!.!. ! uMetLysTyrTrpAlaLeuAlaThrArgLysProArgIleLysGluCysIleGluGlu 303417 : GATGAAGTATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAG : 303473 99 : IleLysAsnAspTrpLeuLys >>>> Target Intron 1 >>>> ProMetTh : 108 :!::!!!:!|||||| !:!! 938 bp ! :! ValGlnSerAspTrpLysGlu++ ++ValGluSe 303474 : GTGCAAAGTGATTGGAAAGAGgt.........................agGTGGAATC : 304441 109 : rSerGluGluArgAsnValMetIleLysGlnAlaArgIleAlaArgIleLeuThrLeu : 127 ! !..!!!:|||.!.:!!|||:!!||| ! !.!!:!!!:!.!|||! !||||||:!! rLeuArgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIle 304442 : TCTCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATA : 304498 128 : LeuSerCysLeuValValGluMetPheAlaIleIleThrSerIleLeuProIlePheG : 147 :!!!!!..!:!! !!:!! ! ! !!.!! !||| ! !! :!! ! |||! IleCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheA 304499 : ATCTGCGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCG : 304558 148 : lyIleSerMetArgTyrArgThrAsnArgThrAspProGlyLysIleLeuProLeuGl : 166 .!! !.!!! ! ! ! ! !!!.! ! ! ! !:!!:!! !! ! laThrGlyThrTyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProTh 304559 : CGACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCAC : 304615 167 : nThrTyrTyrLeuTyrAspValAsnAsnSerProLeuTyrGluLeuThrPheValLeu : 185 ! ! !|||!:!||||||.!.!..||||||:!!|||||||||..!!:! !!:!! rTyrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheVal 304616 : CTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTT : 304672 186 : GlnSerLeuSerMetIleValValAlaThrIleTyrThrGlyProAspThrPheMetS : 205 !!.!!!:!!!!! !|||:!! !:!!||| !.!!||| !! ! !!!. : HisCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaA 304673 : CATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCG : 304732 206 : erLeuLeuValPheHisIleCysGlyGlnLeuLysAsnLeuLysAlaArgIleArgAs : 224 !!|||!!!!.! ||| !|||||||||:!! ! ! !:!!! !:!!|||:!: !!:! laLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAs 304733 : CTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGA : 304789 225 : nLeu : 225 !||| pLeu 304790 : TCTT : 304794 vulgar: CbirOr86NTE 40 225 . KQ414889.1 303301 304794 + 119 M 65 195 5 0 2 I 0 934 3 0 2 M 120 360 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303302 304794 119 + . gene_id 2 ; sequence CbirOr86NTE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303302 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303302 303496 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304794 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304794 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303302 304794 119 + . alignment_id 2 ; Query CbirOr86NTE ; Align 303302 41 195 ; Align 304435 106 360 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr86NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 2 -> 225 Target range: 194168 -> 194831 3 : GluTrpAlaThrGluLeuAsnArgIleSerLeuThrPhePheGlyValTrpProGluA : 22 |||!::|||..!..!:!! !:! !|||||| .!!|||:!!||||||..!. GluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProArgG 194169 : GAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAAGGG : 194226 23 : snHisGluThrLysGlnLysAsnLeuIleSerGluIleArgValIleIleAlaCysAs : 41 !. !!... !:::.!.!:! !! !:!:! !! !! !! !:!::!! !..! luAspSerLeuArgAspArgValArgLeuPheAlaGlnThrGlyValValPheAla-- 194227 : AGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTTCGCT-- : 194283 42 : nLeuLeuIleTrpMetTrpLeuIleProSerLeuHisSerLeuLeuLysIleTyrAsp : 60 |||!!:!! .!. |||:!!||| !:!! !! ! !! ! !! !!!: ----LeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCysGlu 194284 : ----TTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAG : 194334 61 : AspIleThrSerAlaIleAspAsnLeuGlnTyrThrLeuProLeuLeuIleAlaLeuM : 80 |||:!:|||!!! !!!: ! :!! ! !:!! ! !|||:!:|||:!!! AspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleI 194335 : GATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCA : 194394 81 : etLysLeuPheIleIleArgGlnLysLysTyrAspIleLeuLeuValLeuAsnMetIl : 99 !:|||!!!!::! !!:! ! !!!.!:! ! !!:||| !!!! !||| !!! leLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGluMe 194395 : TCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGAT : 194451 100 : eLysAsnAspTrpLeuLysProMetThrSerGluGluArgAsnValMetIleLysGln : 118 ::!!!...!.!:: ! ! ! ! !..!|||!!:|||.!.||||||! !!. tGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsnCys 194452 : GGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGC : 194508 119 : AlaArgIleAlaArgIleLeuThrLeuLeuSerCysLeuValValGluMetPheAlaI : 138 |||!:!|||!.!|||.!!!!!||| !|||! !! !:!! ! ! !|||: AlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaL 194509 : GCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTT : 194568 139 : leIleThrSerIleLeuProIlePheGlyIleSerMetArgTyrArgThrAsnArgTh : 157 !: ! !|||:!!! ! !.!. ! ..!! !! ! !!:! !:!!!.!!: euProTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGluAspAsnSe 194569 : TGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAACAG : 194625 158 : rAspProGlyLysIleLeuProLeuGlnThrTyrTyrLeuTyrAspValAsnAsnSer : 176 ! !! ! ! :!:! ! !|||...!.!||| !!!!!:!! :!!.!.:!!||| rThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAspSer 194626 : TACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGACTCG : 194682 177 : ProLeuTyrGluLeuThrPheValLeuGlnSerLeuSerMetIleValValAlaThrI : 196 |||:!!||||||:!!|||||||||! !|||! !|||! !! ! !:!!:!! !:!!! ProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuSerT 194683 : CCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGTCGA : 194742 197 : leTyrThrGlyProAspThrPheMetSerLeuLeuValPheHisIleCysGlyGlnLe : 215 !! !||| ! !!!:!!!.:!::!! !:!!:!!.!.||| !|||||| !!! hrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGlyLeuPh 194743 : CGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTTGTT : 194799 216 : uLysAsnLeuLysAlaArgIleArgAsnLeu : 225 !:!! !!.. !|||!!:..!!.!:!! eGluValThrSerArgArgMetGluThrIle 194800 : CGAAGTGACCAGCAGAAGGATGGAGACTATT : 194831 vulgar: CbirOr86NTE 2 225 . KQ414889.1 194168 194831 + 118 M 38 114 G 2 0 M 183 549 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194169 194831 118 + . gene_id 3 ; sequence CbirOr86NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194169 194831 . + . KQ414889.1 exonerate:protein2genome:local exon 194169 194831 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 194169 194831 118 + . alignment_id 3 ; Query CbirOr86NTE ; Align 194169 3 114 ; Align 194283 43 549 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr71PN Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 300 -> 354 Target range: 292380 -> 292542 301 : LeuValIleGlnCysAspArgMetTyrTyrAlaIleCysSerGlnGluTrpTyrThrL : 320 :!!:!! !||| !!..!..!!!: :!!||| !! !..! !|||||||||!.!| ValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnL 292381 : GTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATC : 292438 321 : euGluSerLysLysAlaArgAsnLeuIlePheLeuLeuIleGlnThrLysIleProCy : 339 || !!!!::!|||||||||:!!:!!:!!.!.:!!||| ! !|||||| !||| euProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIl 292439 : TGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGAT : 292495 340 : sTyrIleThrAlaGlyLysIlePheProMetThrMetAlaThrPhe : 354 ! ! :!!|||||||||||||||||| !:!::!!:!! !|||||| eLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPhe 292496 : CAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTT : 292542 vulgar: CbirOr71PN 300 354 . KQ414889.1 292380 292542 + 106 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292381 292542 106 + . gene_id 1 ; sequence CbirOr71PN ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292381 292542 . + . KQ414889.1 exonerate:protein2genome:local exon 292381 292542 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292381 292542 106 + . alignment_id 1 ; Query CbirOr71PN ; Align 292381 301 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr71PN Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 312 -> 354 Target range: 206266 -> 206392 313 : CysSerGlnGluTrpTyrThrLeuGluSerLysLysAlaArgAsnLeuIlePheLeuL : 332 |||!!! !.!.|||||| !||| !!:!!:! ! ||||||::!:!!|||.!.:!!: CysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleI 206267 : TGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAA : 206324 333 : euIleGlnThrLysIleProCysTyrIleThrAlaGlyLysIlePheProMetThrMe : 351 !! !..!:!!!!. !||| ! :!!||||||||||||!!:||| !|||:!!:! leAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLe 206325 : TTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTT : 206381 352 : tAlaThrPhe : 354 :|||!:!||| uAlaSerPhe 206382 : AGCTAGTTTC : 206392 vulgar: CbirOr71PN 312 354 . KQ414889.1 206266 206392 + 100 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206267 206392 100 + . gene_id 2 ; sequence CbirOr71PN ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206267 206392 . + . KQ414889.1 exonerate:protein2genome:local exon 206267 206392 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206267 206392 100 + . alignment_id 2 ; Query CbirOr71PN ; Align 206267 313 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr70NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 318 -> 377 Target range: 254271 -> 254448 319 : GlnCysAspArgMetTyrTyrAlaIleCysSerGlnLysTrpTyrThrLeuAspSerL : 338 |||||| !:!:!: ! ! !.!:!!! !! ! ! ! |||||| !||| ..!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 339 : ysLysIleLysAsnLeuIleLeuLeuLeuIleArgThrLysIleProCysTyrIleTh : 357 :!!:!||| :!!|||||||||:!!:!!! !|||:!!!!.:!: ! ! ! ||||| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 358 : rAlaGlyLysValPheProMetThrMetAlaThrPheCysAsnLeuValGluThrSer : 376 ||||||||||:::||| |||:!!:!: !|||||| !!:!!:!! !||||||!:! rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 254443 377 : Val : 377 :!! Leu 254444 : CTT : 254448 vulgar: CbirOr70NTE 318 377 . KQ414889.1 254271 254448 + 108 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254448 108 + . gene_id 1 ; sequence CbirOr70NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254448 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254448 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254448 108 + . alignment_id 1 ; Query CbirOr70NTE ; Align 254272 319 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr70NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 318 -> 377 Target range: 238625 -> 238802 319 : GlnCysAspArgMetTyrTyrAlaIleCysSerGlnLysTrpTyrThrLeuAspSerL : 338 |||||| !:!:!: ! ! !.!:!!! !! ! ! ! |||||| !||| ..!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 339 : ysLysIleLysAsnLeuIleLeuLeuLeuIleArgThrLysIleProCysTyrIleTh : 357 :!!:!||| :!!|||||||||:!!:!!! !|||:!!!!.:!: ! ! ! :!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 358 : rAlaGlyLysValPheProMetThrMetAlaThrPheCysAsnLeuValGluThrSer : 376 |||||||||||||!!.! !|||:!!:!: !|||||| !!:!!:!! !||||||!:! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 377 : Val : 377 :!! Leu 238798 : CTT : 238802 vulgar: CbirOr70NTE 318 377 . KQ414889.1 238625 238802 + 100 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238802 100 + . gene_id 2 ; sequence CbirOr70NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238802 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238802 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238802 100 + . alignment_id 2 ; Query CbirOr70NTE ; Align 238626 319 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr69NI Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 283 -> 337 Target range: 292380 -> 292542 284 : LeuIleIleGlnCysAspArgMetTyrHisAlaIleCysSerGlnLysTrpTyrAsnL : 303 :!!:!: !||| !!..!..!!!: |||||| !! !..! !:!!|||||||||| ValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnL 292381 : GTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATC : 292438 304 : euAspSerLysLysAlaLysAsnLeuIleLeuLeuLeuIleArgThrLysValSerCy : 322 || !!!::!||||||::::!!:!!:!!|||:!!||| !! !|||||| ! !! euProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIl 292439 : TGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGAT : 292495 323 : sTyrIleThrAlaGlyLysValPheProMetThrMetSerThrPhe : 337 ! ! :!!||||||||||||:!!||| !:!::!!:!!!:!|||||| eLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPhe 292496 : CAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTT : 292542 vulgar: CbirOr69NI 283 337 . KQ414889.1 292380 292542 + 110 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292381 292542 110 + . gene_id 1 ; sequence CbirOr69NI ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292381 292542 . + . KQ414889.1 exonerate:protein2genome:local exon 292381 292542 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292381 292542 110 + . alignment_id 1 ; Query CbirOr69NI ; Align 292381 284 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr69NI Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 286 -> 344 Target range: 254271 -> 254445 287 : GlnCysAspArgMetTyrHisAlaIleCysSerGlnLysTrpTyrAsnLeuAspSerL : 306 |||||| !:!:!: !.!.!.!:!!! !! ! ! ! |||||| !!||| ..!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 307 : ysLysAlaLysAsnLeuIleLeuLeuLeuIleArgThrLysValSerCysTyrIleTh : 325 :!!:! ! :!!|||||||||:!!:!!! !|||:!!!!.||| ! ! ! ||||| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 326 : rAlaGlyLysValPheProMetThrMetSerThrPheCysAsnLeuValLysThrSer : 344 ||||||||||:::||| |||:!!:!:! !|||||| !!:!!:!! !:!!|||!:! rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 254443 vulgar: CbirOr69NI 286 344 . KQ414889.1 254271 254445 + 101 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254445 101 + . gene_id 2 ; sequence CbirOr69NI ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254445 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254445 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254445 101 + . alignment_id 2 ; Query CbirOr69NI ; Align 254272 287 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr58NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 290 -> 368 Target range: 291395 -> 292542 291 : IleCysTrpLeuValSerIleLeuIleAsnThrPheAlaHisMetCysLeuTyrCysV : 310 |||! ! !|||!!!:!!|||! !::! ! ! !:!!!!: :!!!:!||| IleLeuThrTyrValThrLeuLeuThrSerPheThrPheAsnIleLeuIlePheCysT 291396 : ATATTAACATACGTCACTCTCCTCACTTCTTTCACTTTCAACATACTGATATTCTGTT : 291453 311 : alValGlyGluIleLeuIleAlaLys >>>> Target Intron 1 >>>> Ala : 319 !|||||||||:!!|||:!!!.!:!! 913 bp !.! yrValGlyGluLeuLeuLeuGlyGln++ ++Gly 291454 : ACGTTGGCGAACTTCTTCTTGGACAGgt.........................agGGT : 292393 320 : GluGlyValTyrTyrAlaThrTyrGluTyrAlaTrpTyrSerLeuLysProAsnGlnA : 339 ...! !:!! :!!|||:!!|||!!: ! !||||||!:!||| ! !...:!!| SerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgArgLysA 292394 : AGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGG : 292453 340 : laLysAspLeuMetLeuIleMetIleArgAlaGluLysProLeuTyrIleThrAlaGl : 358 ||:::|||:!!:!:|||:!::!: !! !.!!:!! ! |||:!! ! :!!|||||||| laArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuThrAlaGl 292454 : CTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGG : 292510 359 : yArgIlePheProMetThrLeuSerMetPhe : 368 |!:!|||||| !:!::!!|||!:!! ||| yLysIlePheValLeuSerLeuAsnThrPhe 292511 : CAAAATATTCGTTCTCTCGTTGAACACTTTT : 292542 vulgar: CbirOr58NTE 290 368 . KQ414889.1 291395 292542 + 132 M 28 84 5 0 2 I 0 909 3 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291396 292542 132 + . gene_id 1 ; sequence CbirOr58NTE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291396 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291396 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292542 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292542 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291396 292542 132 + . alignment_id 1 ; Query CbirOr58NTE ; Align 291396 291 84 ; Align 292393 319 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr58NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 0 -> 217 Target range: 208206 -> 208860 1 : LeuGluTrpAlaIleGlyIleAsnArgIleSerLeuLysIleIleGlyLeuTrpProA : 20 |||...!:: !:!! !!:!:||| ! !!!|||||||||||||||! !|||||| LeuSerPheAsnValArgLeuAsnValTrpThrLeuLysIleIleGlySerTrpProA 208207 : CTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGA : 208264 21 : spAspLysLeuAsnArgTrpGlnArgPheLeuAlaAspLeuArgAlaPheThrIlePh : 39 ..!! ! !..! !||| !..! ! ! ! !!:!!! ! ! !..!:!! rgSerIleAspArgSerTrpLeuGluAsnSerGlnHisIleLeuLeuAsnValLeuSe 208265 : GATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAG : 208321 40 : eIleThrMetIleLeuAlaSerIleLeuProGlyIlePheAlaLeuValArgValTrp : 58 ! ! !:!!:!! ! !! !:!::!!||| ! !.!. ! !:!!! !||| rHisCysLeuLeuGlyPheIleValIleProThrGlyMetPheAlaIleLeuValVal 208322 : TCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTC : 208378 59 : GlyAspMetMetAlaMetThrAspAsnLeuGlnIleGlyLeuProPheSerValThrA : 78 ! !|||.!. ! !... ! ! ! !! !... ! ! ! !|||! !:!!.!! GluAspPheTyrAspGlnLeuLysIleCysSerAlaLeuSerPhePheMetMetAlaP 208379 : GAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGT : 208438 79 : laMetLysPheValIleMetTrpIleArgLysLysGluLeuMetProLeuIleAsnMe : 97 !! !|||!:!||||||||| :!!|||:!! !!::!! ! !! !:!!.!. heThrLysTyrValIleMetThrValArgGluGlyAspIleArgLysCysValGluTy 208439 : TCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTA : 208495 98 : tIleValGluAspTrpIleLysValLysThrGluGlnGluArgGluIleMetIleLys : 116 :!!! !! ||||||! !!!.|||:!! !|||:!!!!:|||:!!||||||:!: ! rValGluAlaAspTrpArgAsnValGluHisGluGluAspArgLysIleMetLeuAsp 208496 : CGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGAC : 208552 117 : GlnAlaLysThrAlaArg<->MetIleValMetPheGlyGlyIleMetMetThrLeuA : 135 .!.|||!.. !|||||| :!!||||||!!:! !|||!.!.!!||| ! . AsnAlaSerPheAlaArgLysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyV 208553 : AACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtg : 208612 136 : laSerIleIleLeuIleIleProProCysPheGlyTyrSerMetArgTyrLeuThrAs : 154 .. ... ||| ! !||| ! ! !! !!!.!:!: ! ! ! !.. alIlePheTyrTyrIleAlaLeuProLeuThrArgAspLysValValGluGluGlyGl 208613 : taattttctattacaTCGCTTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGG : 208669 155 : nLeuThrAspSerGlyLysProLeuLeuLeuGlnThrTyrTyrLeuArgAspMetThr : 173 ! ! ! ! ! !!!:!! !:!!! !! ! !! ! !:!:!!! !|||:!: ! yAsnLeuThrTyrArgArgLeuValTyrProValProLysPheIleLeuAspValArg 208670 : CAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGA : 208726 174 : GluSerProTyrPheGluIleAlaPheIleAlaGlnAlaThrSerIleIleValAlaA : 193 ! |||||| !|||||| !!:!! !.!||| ! !||| !.!!|||||| TyrSerProValAsnGluIlePheTyrThrValGlnLeuLeuSerGlyPheValAlaH 208727 : TACAGTCCTGTGAATGAGATTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTC : 208786 194 : laIleSerTyrThrGlyIleAspAsnPheLeuSerValValIlePheHisIleCysAl : 212 !! !! ! ..!||| ! !..!!!. !:!!:!!:!! .!.||| |||!. isAsnIleThrValGlyAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGl 208787 : ATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGG : 208843 213 : aGlnLeuAspIleLeu : 217 !||||||.!.|||||| yGlnLeuGlnIleLeu 208844 : ACAGCTGCAGATTTTG : 208860 vulgar: CbirOr58NTE 0 217 . KQ414889.1 208206 208860 + 124 M 122 366 G 0 3 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208207 208860 124 + . gene_id 2 ; sequence CbirOr58NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208207 208860 . + . KQ414889.1 exonerate:protein2genome:local exon 208207 208860 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208207 208860 124 + . alignment_id 2 ; Query CbirOr58NTE ; Align 208207 1 366 ; Align 208576 123 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr84NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 320 -> 374 Target range: 264723 -> 264885 321 : GlnCysAsnGluIleHisPheAlaThrTyrAsnHisGluTrpTyrPheLeuAspSerL : 340 ||||||!!.:!!:!! ! !.!..!|||! .!.||||||!:!||| !! !| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 341 : ysGluAlaLysAsnLeuIleProPheMetIleArgAlaSerGlnProIleHisPheTh : 359 ||!!: ! :!!||||||! !.!!!!::!!|||:!!||| ! !.!! ! ||||| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 360 : rAlaGlyLysValPheProMetThrMetAlaThrPheCysAsnLeu : 374 ||||||||||:!!.!!! !|||:!!||| !|||||| !!:!!:!! rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAspVal 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACGTA : 264885 vulgar: CbirOr84NTE 320 374 . KQ414889.1 264723 264885 + 105 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264885 105 + . gene_id 1 ; sequence CbirOr84NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264885 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264885 105 + . alignment_id 1 ; Query CbirOr84NTE ; Align 264724 321 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr84NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 317 -> 371 Target range: 292380 -> 292542 318 : LeuMetAlaGlnCysAsnGluIleHisPheAlaThrTyrAsnHisGluTrpTyrPheL : 337 :!!:!! !||| !!!:!|||||| !|||:!!|||:!! ||||||||| !| ValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnL 292381 : GTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATC : 292438 338 : euAspSerLysGluAlaLysAsnLeuIleProPheMetIleArgAlaSerGlnProIl : 356 || !!!::!:!!|||::::!!:!!:!!! ! ! :!: !! !.!!!.!!!.||||| euProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIl 292439 : TGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGAT : 292495 357 : eHisPheThrAlaGlyLysValPheProMetThrMetAlaThrPhe : 371 | ! .!!||||||||||||:!!||| !:!::!!:!! !|||||| eLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPhe 292496 : CAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTT : 292542 vulgar: CbirOr84NTE 317 371 . KQ414889.1 292380 292542 + 103 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292381 292542 103 + . gene_id 2 ; sequence CbirOr84NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292381 292542 . + . KQ414889.1 exonerate:protein2genome:local exon 292381 292542 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292381 292542 103 + . alignment_id 2 ; Query CbirOr84NTE ; Align 292381 318 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr67NC Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 3 -> 219 Target range: 221381 -> 222032 4 : AlaValLysLeuAsnArgIleSerLeuGluMetIleGlyLeuTrpProLysProGluL : 23 ::!|||:!!|||!:!||| ! !|||:!! !||||||:!!||||||!!. !!! ! SerValGlnLeuSerArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaA 221382 : AGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCA : 221439 24 : ysIleArgArgAspGluLeuLysArgAsnLeuTyrValPheValValLeuLeuMetLe : 42 !.||| !! !! ||| ! ! ! ! !!! ! :!! !||||||! !! !! || snIleSerThrValGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLe 221440 : ACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCT : 221496 43 : uValIleValGlyLeuPheProCysThrLeuSerLeuLeuArgIleGlnGlnAsnPhe : 61 |:!!! !! !||| ! ||||||!:!|||! !:!!:!!! ! ! !:!!:!! !! uIleThrPheLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspVal 221497 : GATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTC : 221553 62 : ThrLeuIleIleGluGlnLeuGlnPheLeuLeuProLeuValThrCysValIleArgL : 81 ! !! !|||:!! !||| ||| ! !! !|||! !... !!:!!!:!! TyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysT 221554 : TACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGT : 221613 82 : euValIlePheTrpTrpLysLysGluAlaValIleSerIleMetAsnMetIleValGl : 100 ! !:!:!!. ! :!!.!.! !:!! !..! !!!:.!. |||! ! yrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTr 221614 : ATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATG : 221670 101 : uAspTrpLeuAsnSerLysAsnIleGlnGluLysAsnIleMetIleThrTrpAlaGln : 119 !|||||| !|||! !! !! !:!!!!:|||:!!||||||||| ! ||| pAspTrpLysAsnIleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIle 221671 : GGATTGGAAGAATATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATT : 221727 120 : LysProArgLysIleIleMetIleAlaTyrSerIleMet<-><->GlyIleSerTyrA : 137 !|||::!:!:|||||||||..! ! !.!!||| |||... ::: PheGlyArgArgLeuIleMetIleCysThrPhePheMetTyrSerGlyPheValPheT 221728 : TTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGTACAGTggtttcgtttttt : 221787 138 : laCysValValValLeuProAlaLeuGlyIleSerValThrTyrThrArgAsnAlaTh : 156 ::!!.!:!!! ! !::!:!!|||! !! ! !.!! ! ! |||...|| yrTyrIleAlaIleProPheSerValGlyLysIleProAlaGlnAspValAsnValTh 221788 : attacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaac : 221844 157 : rAspIleAsnLysIleLeuProLeuGlnGlyPhePheIleTyrAspAlaThrLysThr : 175 | ||| ! !:!:!!!|||!!!..! !! |||||| !|||.!! ! ! !:! rPheIleProMetValPheProPheSerArg---PheIleValAspThrArgTyrSer 221845 : ttttattCCAATGGTGTTTCCTTTCTCGAGA---TTTATCGTCGATACTCGGTACAGT : 221898 176 : ProLeuTyrIleLeuThrTyrIleAlaGlnValIleThrPhePhePheAlaValMetA : 195 |||:!! !! :!! !!:! !|||:!!!!:.!! ! !!!. ! !! ProValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerI 221899 : CCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTA : 221958 196 : laTyrThrGlyIleAspAsnPheLeuGlyLeuLeuValPheHisIleCysGlyGlnMe : 214 ! :!!!.! ! !!:!!!.:!!!.!:!!!!!!.! ! ||| !||||||||||| leThrSerAlaAlaCysSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMe 221959 : TTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGAT : 222015 215 : tGluIleLeuMetAla : 219 |:!!:!:||||||::! tGlnValLeuMetSer 222016 : GCAAGTGTTGATGAGC : 222032 vulgar: CbirOr67NC 3 219 . KQ414889.1 221381 222032 + 125 M 129 387 G 0 6 M 34 102 G 1 0 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221382 222032 125 + . gene_id 1 ; sequence CbirOr67NC ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221382 222032 . + . KQ414889.1 exonerate:protein2genome:local exon 221382 222032 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221382 222032 125 + . alignment_id 1 ; Query CbirOr67NC ; Align 221382 4 387 ; Align 221775 133 102 ; Align 221877 168 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr67NC Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 3 -> 219 Target range: 226933 -> 227584 4 : AlaValLysLeuAsnArgIleSerLeuGluMetIleGlyLeuTrpProLysProGluL : 23 ::!:!!:!!||||||||| !|||:!! :!!|||:!!||||||..! !!...| SerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgL 226934 : AGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCA : 226991 24 : ysIleArgArgAspGluLeuLysArgAsnLeuTyrValPheValValLeuLeuMetLe : 42 ||! ! !||| ! ! ! !::!! !! :!! ! !!:!!! !! ! !|| ysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLe 226992 : AAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCT : 227048 43 : uValIleValGlyLeuPheProCysThrLeuSerLeuLeuArgIleGlnGlnAsnPhe : 61 |:!!! ! !!! !||| !! !! !! !|||! !:!!:!!! ! !:!!..! ! uMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAla 227049 : GATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCT : 227105 62 : ThrLeuIleIleGluGlnLeuGlnPheLeuLeuProLeuValThrCysValIleArgL : 81 ! !! :!::!!..!:!! :!!! ! !!!!!.!! !! !:!!:!!!:!! TyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuLysT 227106 : TACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGT : 227165 82 : euValIlePheTrpTrpLysLysGluAlaValIleSerIleMetAsnMetIleValGl : 100 ! !!!:!!. !!:: ! :!!!!:! !:!!:!!..! !:!:.!. !||| ! yrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIleLysTr 227166 : ACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATG : 227222 101 : uAspTrpLeuAsnSerLysAsnIleGlnGluLysAsnIleMetIleThrTrpAlaGln : 119 !|||||| !|||! !!:! !!:!::!!!!:!:!|||:!:|||:!:|||!::||| ! pAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyr 227223 : GGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTAT : 227279 120 : LysProArgLysIleIleMetIleAlaTyrSerIleMetGlyIleSerTyrAlaCysV : 139 ! !||||||:!:|||! |||..! ! !.!!:!: !! |||:::... TyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheValPheP 227280 : TACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttt : 227339 140 : alValValLeuProAlaLeuGlyIleSerValThrTyrThrArgAsnAlaThrAspIl : 158 :!!:!! ! !!:!!..! !.!! !..! |||..!:!!!.!!.! !!! heTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSe 227340 : tctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAG : 227396 159 : eAsnLysIleLeuProLeuGln<->GlyPhePheIleTyrAspAlaThrLysThrPro : 176 ! !!! :!!|||!!!! ! ! .!!||| !|||!.! ! ! !:!||| rTyrIleGlnMetProPheProPheProLysIleIleAlaAspValArgTyrSerPro 227397 : TTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCT : 227453 177 : LeuTyrIleLeuThrTyrIleAlaGlnValIleThrPhePhePheAlaValMetAlaT : 196 !!! !! :!! !!:! !.!||| !!:!!||| !.!! ! ! ! !.! PheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuHisGlyValT 227454 : TTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCA : 227513 197 : yrThrGlyIleAspAsnPheLeuGlyLeuLeuValPheHisIleCysGlyGlnMetGl : 215 :!!!.! ! !!:!.!. !!.!||||||!.! !!||| !|||||||||||||| hrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGl 227514 : CGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGA : 227570 216 : uIleLeuMetAla : 219 |:!:|||:!!:!! uValLeuValSer 227571 : GGTGTTGGTGTCC : 227584 vulgar: CbirOr67NC 3 219 . KQ414889.1 226933 227584 + 119 M 162 486 G 0 3 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226934 227584 119 + . gene_id 2 ; sequence CbirOr67NC ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226934 227584 . + . KQ414889.1 exonerate:protein2genome:local exon 226934 227584 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226934 227584 119 + . alignment_id 2 ; Query CbirOr67NC ; Align 226934 4 486 ; Align 227423 166 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr63NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 3 -> 226 Target range: 232456 -> 233128 4 : SerPhePheIleLysIleGluIleArgLeuLysThrLeuLeuGlyIleTrpProGluA : 23 ..!!:! !|||:!!:!:.!. ! !!!!! !|||! !:!!||| !||||||... GluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgV 232457 : GAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTG : 232514 24 : snHisGluThrLysGlnLysLysLeuMetSerAspIleArgValIleIleThrLeuAs : 42 ! ||||||..!::! :!!! !:!: !! ! !! !:!!! !:!!|||! !:! alThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHi 232515 : TTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCA : 232571 43 : nLeuIleThrTrpIleCysLeuIleProSerLeuHisSerLeuLeuLysIleTyrAsp : 61 !! !:!:! ! !! :!!:!!|||!!!:!!! ! !:!!||| ! !! sSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThr 232572 : TTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACG : 232628 62 : AspIleIleLeuThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuMetAlaIleI : 81 ..!:!! !! !!!: ! ::!:!! !! ! !! !!!!||||||!.! !: SerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluL 232629 : AGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAAT : 232688 82 : leLysLeuSerIleMetTrpHisLysLysAsnAspIleLeuProLeuLeuAsnMetIl : 100 !:!!.! !!!! !:!!! ! ||| !|||||||||||| !! !:!!.!...!:! euAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnVa 232689 : TGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGT : 232745 101 : eLysAspAspTrpLeuArgProLysThrSerGluGluArgAsnValMetIleLysGln : 119 :|||.!.||||||! !!.! !|||! ! !!! .!.|||:!!:!!|||:!:|||.!. lLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsn 232746 : GAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAAC : 232802 120 : AlaArgIleAlaArgIleLeuThrIlePheCysCysCysIleMetLeuIleSerAlaI : 139 |||!:!:!!!.!||| :!!.!! !.!!..!...! ! !|||! !! !.!!!.! AlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValG 232803 : GCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCG : 232862 140 : leValIleLeuValIleProLeuPheGlyIleSerMetArgTyrArgThrAsnArgTh : 158 ! ! ! !:!!:!! !! !.!! !!!!:|||! ! !||| ! !|||..!!: lySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSe 232863 : GCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAG : 232919 159 : rAspSerAspLysSerLeuProLeuGlnThrTyr<->TyrValTyrAspLysGluLys : 176 ! !!||| ! !!||||||! ! ! !||| ! :!! |||! ..! rTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPhe 232920 : TTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTC : 232976 177 : SerProPhePheGluIleThrTyrValLeuGlnCysIleSerAlaThrLeuSerGlyP : 196 |||||| !||||||! !!:!||||||||||||:!!|||!.! !:!! !..!! SerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnS 232977 : AGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACT : 233036 197 : heMetTyrSerGlyThrAspSerPheLeuThrPheLeuValPheHisValCysGlyGl : 215 !:!: ! !|||.!! !.!!!!. !.!! !!|||!.!.!.|||!.!|||||||| erValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGl 233037 : CCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACA : 233093 216 : nLeuGluAsnLeuLysLysArgValIleAspLeu : 226 ||||.!. :!!! !..!!:!:!! !|||||| nLeuAsnValValMetSerLysLeuAspAspLeu 233094 : GCTGAACGTGGTGATGTCGAAATTGGACGATTTG : 233128 vulgar: CbirOr63NTE 3 226 . KQ414889.1 232456 233128 + 157 M 166 498 G 0 3 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232457 233128 157 + . gene_id 1 ; sequence CbirOr63NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232457 233128 . + . KQ414889.1 exonerate:protein2genome:local exon 232457 233128 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232457 233128 157 + . alignment_id 1 ; Query CbirOr63NTE ; Align 232457 4 498 ; Align 232958 170 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr63NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 2 -> 219 Target range: 208206 -> 208860 3 : LeuSerPhePheIleLysIleGluIleArgLeuLysThrLeuLeuGlyIleTrpProG : 22 ||||||||| !:!!::::!:.!.:!: !! ! !! !:!!:!!||| !||||||. LeuSerPheAsnValArgLeuAsnValTrpThrLeuLysIleIleGlySerTrpProA 208207 : CTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGA : 208264 23 : luAsnHisGluThrLysGlnLysLysLeuMetSerAspIleArgValIleIleThrLe : 41 .!::! !!: !... ! !:!! !! ..! !!|||! !:!!! !:!! ! rgSerIleAspArgSerTrpLeuGluAsnSerGlnHisIleLeuLeuAsnValLeuSe 208265 : GATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAG : 208321 42 : uAsnLeuIleThrTrpIleCysLeuIleProSerLeuHisSerLeuLeuLysIleTyr : 60 !:!!! !:!: ! ! .!! !:!!||||||!!! ! ! ! !:!! :!! ! rHisCysLeuLeuGlyPheIleValIleProThrGlyMetPheAlaIleLeuValVal 208322 : TCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTC : 208378 61 : AspAspIleIleLeuThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuMetAlaI : 80 !!:|||.!! ! ! !:!! ! ! !! !... ! ! ! !!!!:!!||||||. GluAspPheTyrAspGlnLeuLysIleCysSerAlaLeuSerPhePheMetMetAlaP 208379 : GAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGT : 208438 81 : leIleLysLeuSerIleMetTrpHisLysLysAsnAspIleLeuProLeuLeuAsnMe : 99 !!! |||! ! !|||||| !::::!!..!||||||! ! !! !:!!.!. heThrLysTyrValIleMetThrValArgGluGlyAspIleArgLysCysValGluTy 208439 : TCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTA : 208495 100 : tIleLysAspAspTrpLeuArgProLysThrSerGluGluArgAsnValMetIleLys : 118 :!!:!!! !|||||| !!.! !:!! !..!|||!!:|||!!.:!!|||:!: ! rValGluAlaAspTrpArgAsnValGluHisGluGluAspArgLysIleMetLeuAsp 208496 : CGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGAC : 208552 119 : GlnAlaArgIleAlaArgIleLeuThrIlePheCysCysCysIleMetLeuIleSerA : 138 .!.|||!!!.!!||||||! !|||! !:!:.!.||| ! ..!.!!|||! ! !.!.. AsnAlaSerPheAlaArgLysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyV 208553 : AACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtg : 208612 139 : laIle<->ValIleLeuValIleProLeuPheGlyIleSerMetArgTyrArgThrAs : 156 ..||| :!!!.!:!:|||||| ! !! !!.!:!: ! ! ..! !.. alIlePheTyrTyrIleAlaLeuProLeuThrArgAspLysValValGluGluGlyGl 208613 : taattttctattacaTCGCTTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGG : 208669 157 : nArgThrAspSerAspLysSerLeuProLeuGlnThrTyrTyrValTyrAspLysGlu : 175 !!.! ! ! ! !:! !:!! !! ! !! ! !:!:!! ||| ..! yAsnLeuThrTyrArgArgLeuValTyrProValProLysPheIleLeuAspValArg 208670 : CAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGA : 208726 176 : LysSerProPhePheGluIleThrTyrValLeuGlnCysIleSerAlaThrLeuSerG : 195 ! |||||| ! !|||||| !|||..!:!!|||! :!:|||!.! !:!!:!! TyrSerProValAsnGluIlePheTyrThrValGlnLeuLeuSerGlyPheValAlaH 208727 : TACAGTCCTGTGAATGAGATTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTC : 208786 196 : lyPheMetTyrSerGlyThrAspSerPheLeuThrPheLeuValPheHisValCysGl : 214 ! !!!: !|||.!! !.!!!!. !.!!.!.|||!.!.!.|||!.!||||| isAsnIleThrValGlyAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGl 208787 : ATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGG : 208843 215 : yGlnLeuGluAsnLeu : 219 |||||||:!!! !||| yGlnLeuGlnIleLeu 208844 : ACAGCTGCAGATTTTG : 208860 vulgar: CbirOr63NTE 2 219 . KQ414889.1 208206 208860 + 148 M 137 411 G 0 3 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208207 208860 148 + . gene_id 2 ; sequence CbirOr63NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208207 208860 . + . KQ414889.1 exonerate:protein2genome:local exon 208207 208860 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208207 208860 148 + . alignment_id 2 ; Query CbirOr63NTE ; Align 208207 3 411 ; Align 208621 140 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr63NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 16 -> 241 Target range: 278612 -> 279299 17 : LeuGlyIleTrpProGluAsn<->HisGluThrLysGlnLysLysLeuMetSerAspI : 35 :!!|||:!!|||||| !:! !! !|||! !:!!|||:!!! |||! : IleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValV 278613 : ATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGG : 278670 36 : leArgValIleIleThrLeuAsnLeuIleThrTrpIleCysLeuIleProSerLeuHi : 54 !!! !!.!:!!|||!:!! ! !|||||| !!:::!!! :!! !:!!||| alLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCy 278671 : TCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTG : 278727 55 : sSerLeuLeuLysIleTyrAspAspIleIleLeuThrIleAspAsnLeuGlnTyrThr : 73 !!!!:!!||| ! ! ! !! !|||:!! ! !! !||| ! ! :!! ! ! sThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeu 278728 : CACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTA : 278784 74 : LeuProLeuLeuMetAlaIleIleLysLeuSerIleMetTrpHisLysLysAsnAspI : 93 ! !! ! !||||||! ||||||! !! !|||:!: ! ::: ..! ! | SerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysI 278785 : AGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGA : 278844 94 : leLeuProLeuLeuAsnMetIleLysAspAspTrp<-><-><->LeuArgProLysTh : 109 || ! !! !:!!||| |||::: |||||| ||| ! !::: leGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGl 278845 : TCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtca : 278901 110 : rSerGluGluArgAsnValMetIleLysGlnAlaArgIleAlaArgIleLeuThrIle : 128 ...|||||||||...:::|||! ! ...|||||||||!.!||| !|||.!!||| nGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIle 278902 : agaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATC : 278958 129 : PheCysCysCysIleMetLeuIleSerAlaIle<->ValIleLeuValIleProLeuP : 147 ||| !!..! !!.!!|||! ! !.!!!.!:!! !! ! !|||!!:||||||| PheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuP 278959 : TTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGT : 279018 148 : heGlyIleSerMetArgTyrArgThrAsnArgThrAspSerAspLysSerLeuProLe : 166 ||!.!:!! !!! !..! !! ! !|||..!|||! !!!..!:!!:!!!!!|||:! heAlaValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIl 279019 : TCGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGAT : 279075 167 : uGlnThrTyrTyrValTyrAspLysGluLysSerProPhePheGluIleThrTyrVal : 185 ! ! ! !:!! !||| !...! ||||||! |||||||||..! ! !! eTyrArg---GlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPhe 279076 : CTATCGC---GGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTC : 279129 186 : LeuGlnCysIleSerAlaThrLeuSerGlyPheMetTyrSerGlyThrAspSerPheL : 205 :!!||||||:!::!!||| !:!!! ! !! :!: ! !|||.!! !|||!!.: MetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuI 279130 : ATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGA : 279189 206 : euThrPheLeuValPheHisValCysGlyGlnLeuGluAsnLeuLysLysArgValIl : 224 !!.!! ! !!!|||.!.|||||||||||||||!!!..!! ||| !! !!:!:!! leAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAs 279190 : TTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGA : 279246 225 : eAspLeuAspLysPheHisAspPheArgAsnThrLeuSerTyrAsnIleGln : 241 ! ! ||| ! ! ! |||!!.!:!|||||| :!! !||| pLysLeuIleAspGlyValLysGlyArgLysSerLeuSerThrHisGluGln 279247 : TAAGCTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAA : 279299 vulgar: CbirOr63NTE 16 241 . KQ414889.1 278612 279299 + 148 M 7 21 G 0 3 M 81 243 G 0 9 M 35 105 G 0 3 M 29 87 G 1 0 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278613 279299 148 + . gene_id 3 ; sequence CbirOr63NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278613 279299 . + . KQ414889.1 exonerate:protein2genome:local exon 278613 279299 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278613 279299 148 + . alignment_id 3 ; Query CbirOr63NTE ; Align 278613 17 21 ; Align 278637 24 243 ; Align 278889 105 105 ; Align 278997 140 87 ; Align 279084 170 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr63NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 16 -> 219 Target range: 284559 -> 286183 17 : LeuGlyIleTrpProGluAsn<->HisGluThrLysGlnLysLysLeuMetSerAspI : 35 :!!|||:!!|||||| !:! !! !|||! !:!!|||:!!! |||! : IleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValV 284560 : ATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGG : 284617 36 : leArgValIleIleThrLeuAsnLeuIleThrTrpIleCysLeuIleProSerLeuHi : 54 !!! !!.!:!!|||!:!! ! !|||||| !!:::!!! :!! !:!!||| alLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCy 284618 : TCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTG : 284674 55 : sSerLeuLeuLysIleTyrAspAspIleIleLeuThrIleAspAsnLeuGlnTyrThr : 73 !!!!:!!||| ! ! ! !! !|||:!! ! !! !||| ! ! :!! ! ! sThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeu 284675 : CACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTG : 284731 74 : LeuProLeuLeuMetAlaIleIleLysLeuSerIleMetTrpHisLysLysAsnAspI : 93 ! !! !:!!|||||| ||||||! !! !|||:!: ::: ..! ! | SerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysI 284732 : AGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGA : 284791 94 : leLeuProLeuLeuAsnMetIleLysAspAsp{Tr} >>>> Target Intron 1 : 104 || !! !! !:!!!!. |||:::! |||{||} 1012 bp leGlyGlnCysValLysAspIleArgAlaAsp{Tr}++ 284792 : TCGGCCAATGCGTGAAGGACATTCGTGCGGAC{TG}gt.................... : 284828 105 : >>>> {p}LeuArgProLysThrSerGluGluArgAsnValMetIleLysGlnAla : 120 {|}||| !! !!.. ...|||||||||...:::|||! ! ...||| +-{p}LeuSerHisSerGlnGluGluGluArgGluIleMetArgAspSerAla 284829 : .....ac{G}CTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCT : 285884 121 : ArgIleAlaArgIleLeuThrIlePheCysCysCysIleMetLeuIleSerAla<->I : 139 ||||||!.!||| !|||.!!|||||||||..! !!.!!|||! ! !.!!!.! . ArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPheP 285885 : AGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTT : 285944 140 : leValIleLeuValIleProLeuPheGlyIleSerMetArgTyrArgThrAsnArgTh : 158 !! !! ! !|||!!:||||||! ! !:!! !!! !..! !! ! !|||..!|| heTyrThrThrValMetProLeuCysThrValArgThrGluIleIleAspAsnGluTh 285945 : TCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGAC : 286001 159 : rAspSerAspLysSerLeuProLeuGlnThrTyrTyrValTyrAspLysGluLysSer : 177 |! !!!..!:!!:!!!!!|||:!! ! ! !:!! !||| !...! ||| rValArgSerGlnAlaPheProIleTyrArg---GlyLeuLeuAspProArgThrSer 286002 : CGTGAGATCTCAAGCGTTCCCGATCTATCGC---GGCCTTCTCGATCCGCGTACCAGC : 286055 178 : ProPhePheGluIleThrTyrValLeuGlnCysIleSerAlaThrLeuSerGlyPheM : 197 |||! |||||||||..! ! !!:!!||||||:!::!!||| !:!!! ! !! : ProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerV 286056 : CCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGG : 286115 198 : etTyrSerGlyThrAspSerPheLeuThrPheLeuValPheHisValCysGlyGlnLe : 216 !: ! !|||.!! !|||!!. !.!! ! !!!|||.!.|||||||||||||||!! alThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPh 286116 : TCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATT : 286172 217 : uGluAsnLeu : 219 !..!! ||| eArgIleLeu 286173 : TAGGATACTT : 286183 vulgar: CbirOr63NTE 16 219 . KQ414889.1 284559 286183 + 137 M 7 21 G 0 3 M 80 240 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 34 102 G 0 3 M 30 90 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284560 286183 137 + . gene_id 4 ; sequence CbirOr63NTE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284560 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284560 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286183 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286183 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284560 286183 137 + . alignment_id 4 ; Query CbirOr63NTE ; Align 284560 17 21 ; Align 284584 24 240 ; Align 285839 105 102 ; Align 285944 139 90 ; Align 286034 170 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr63NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 16 -> 225 Target range: 259808 -> 260438 17 : LeuGlyIleTrpProGluAsnHisGluThrLysGlnLysLysLeuMetSerAspIleA : 36 :!!||| !|||||| ::: !...|||! ::! :!! !!!:! !..!:!!! IleGlyAlaTrpProProSerSerSerThrThrArgLeuGluLysIleIleSerValI 259809 : ATAGGCGCTTGGCCACCTTCATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTA : 259866 37 : rgValIleIleThrLeuAsnLeuIleThrTrpIleCysLeuIleProSerLeuHisSe : 55 !:!!|||.!!! !! ! !! !! !! ! !:!! !|||||||||!!!:!!! ! leLeuIlePheIleCysTyrSerThrIleLeuValThrLeuIleProCysValLeuHi 259867 : TCCTGATCTTTATCTGCTACAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCA : 259923 56 : rLeuLeuLysIleTyrAspAspIleIleLeuThrIleAspAsnLeuGlnTyrThrLeu : 74 !:!!||| ! !!:..!:!: !:!!! !! ! ||| ! ! ! sMetLeuLeuGluLysGluSerLeuTyrMetLysThrLysValLeuGlyProLeuThr 259924 : CATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACC : 259980 75 : ProLeuLeuMetAlaIleIleLysLeuSerIleMetTrpHisLysLysAsnAspIleL : 94 ! !! !!!!:!:!.! !|||!!.! !!!!! :!!! ! !:! !..||||||| HisTrpPheValGlyCysIleAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleL 259981 : CACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATAC : 260040 95 : euProLeuLeuAsnMetIleLysAspAspTrpLeuArgProLysThrSerGluGluAr : 113 || !! !:!!.!. :!::!!:!!|||||| !! ! !! !! !..!:!!!!:!: euSerCysValGluHisValGluAsnAspTrpArgIleIleThrArgGluLysAspGl 260041 : TTAGCTGCGTGGAACACGTGGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCA : 260097 114 : gAsnValMetIleLysGlnAlaArgIleAlaArgIleLeuThrIlePheCysCysCys : 132 !|||||||||:!:!:! ! |||!:!.!!!.!||| !:!!.!! !! !|||.....! nAsnValMetLeuArgTyrAlaLysPheGlyArgTyrValAlaAlaSerCysAlaAla 260098 : GAACGTGATGTTGAGATACGCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCT : 260154 133 : IleMetLeuIleSerAlaIleValIleLeuValIleProLeuPheGlyIleSerMetA : 152 .!!:!!! ! !.!!!.!:!: !.!!! !:!!:!! !!:!!!!..!!! !..!:!!! PheValGlnGlyGlyValLeuCysPheCysLeuValThrValLeuSerThrGluValI 260155 : TTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGA : 260214 153 : rgTyrArgThrAsnArgThrAspSerAspLysSerLeuProLeuGlnThrTyr<->Ty : 170 ! ! ! !|||..!||| ! !! ! ! !||||||! ! !..!||| ! leGlnValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaValTyrLysGl 260215 : TACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGA : 260271 171 : rValTyrAspLysGluLysSerProPhePheGluIleThrTyrValLeuGlnCysIle : 189 :!! :!! !.!. ! ||||||.!. !||||||..! !|||:!!|||! !:!! uLeuIleAsnValAsnAspSerProMetAsnGluIleValLeuValValGlnPheVal 260272 : GCTGATAAACGTGAACGACAGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTC : 260328 190 : SerAlaThrLeuSerGlyPheMetTyrSerGlyThrAspSerPheLeuThrPheLeuV : 209 |||!.! !:!! !..!! ! ! !|||! ! !|||.!! !.!! !!|||. SerGlyPheIleValAsnSerSerThrValGlyIlePheSerLeuAlaAlaValLeuT 260329 : TCGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGA : 260388 210 : alPheHisValCysGlyGlnLeuGluAsnLeuLysLysArgValIleAsp : 225 .! !|||!.!||||||||||||.!. |||! !:!! !!:!!! !!: hrAlaHisAlaCysGlyGlnLeuAsnValLeuMetGluTrpIleThrGlu 260389 : CCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAATGGATCACGGAG : 260438 vulgar: CbirOr63NTE 16 225 . KQ414889.1 259808 260438 + 133 M 153 459 G 0 3 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259809 260438 133 + . gene_id 5 ; sequence CbirOr63NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259809 260438 . + . KQ414889.1 exonerate:protein2genome:local exon 259809 260438 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259809 260438 133 + . alignment_id 5 ; Query CbirOr63NTE ; Align 259809 17 459 ; Align 260271 170 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr63NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 77 -> 219 Target range: 227149 -> 227578 78 : MetAlaIleIleLysLeuSerIleMetTrpHisLysLysAsnAspIleLeuProLeuL : 97 |||:!!:!!:!!|||! !|||!!::!! ! ! ! :!!:!!||||||||| !! !: MetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysV 227150 : ATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCG : 227207 98 : euAsnMetIleLysAspAspTrpLeuArgProLysThrSerGluGluArgAsnValMe : 116 !!.!. !|||||| |||||| !!.! !!:! ! !|||!!:||||||||||| alGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMe 227208 : TCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGAT : 227264 117 : tIleLysGlnAlaArgIleAlaArgIleLeuThrIlePheCysCysCysIleMetLeu : 135 |:!:! ! ! ||| ! !!.!|||! !|||! !! !.!!||| ! !.!!:!:!!! tValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValPhe 227265 : GGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTC : 227321 136 : IleSerAlaIleValIleLeuValIleProLeuPheGlyIleSerMetArgTyrArgT : 155 ! ||| ::: ... :!!:!! !! !.!!..! !.!!! ! ! ! SerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerValAlaThrG 227322 : AgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGG : 227381 156 : hrAsnArgThrAspSerAspLysSerLeuProLeuGln<->ThrTyrTyrValTyrAs : 173 !:!! !!!.! !!||| !!! ..!:!!|||!!!! ! !! ! !:!! !|| luAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIleIleAlaAs 227382 : AGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGA : 227438 174 : pLysGluLysSerProPhePheGluIleThrTyrValLeuGlnCysIleSerAlaThr : 192 | ... ! ||||||||| !|||||| !!:! !:!!|||! !:!!!!!!.!! ! pValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValThrGlyIle 227439 : CGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATC : 227495 193 : LeuSerGlyPheMetTyrSerGlyThrAspSerPheLeuThrPheLeuValPheHisV : 212 :!!! ! ! !:!: |||!.!.!! !|||.!. !.!!.!.|||!.! !!|||! ValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisA 227496 : GTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATG : 227555 213 : alCysGlyGlnLeuGluAsnLeu : 219 .!|||||||||:!!||| ||| laCysGlyGlnMetGluValLeu 227556 : CTTGCGGTCAGATGGAGGTGTTG : 227578 vulgar: CbirOr63NTE 77 219 . KQ414889.1 227149 227578 + 129 M 90 270 G 0 3 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 227150 227578 129 + . gene_id 6 ; sequence CbirOr63NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 227150 227578 . + . KQ414889.1 exonerate:protein2genome:local exon 227150 227578 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 227150 227578 129 + . alignment_id 6 ; Query CbirOr63NTE ; Align 227150 78 270 ; Align 227423 168 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr63NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 16 -> 219 Target range: 266673 -> 267285 17 : LeuGlyIleTrpProGluAsnHisGluThrLysGlnLysLysLeuMetSerAspIleA : 36 :!!||| !|||||| ! |||...:!! :!!! !!!: !..! ! IleGlyAlaTrpProProLeuSerLeuThrSerLysLeuGluArgIleValSerTyrA 266674 : ATAGGCGCTTGGCCGCCGTTGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACG : 266731 37 : rgValIleIleThrLeuAsnLeuIleThrTrpIleCysLeuIleProSerLeuHisSe : 55 !:!!|||:!!! !! ! !!! ! !! ! !.!! !:!!||||||!!!||| ! laLeuIleValIleCysTyrCysSerIleLeuPheThrValIleProCysLeuPheHi 266732 : CTTTGATCGTCATCTGCTACTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCA : 266788 56 : rLeuLeuLysIleTyrAspAspIleIleLeuThrIleAspAsnLeuGlnTyrThrLeu : 74 !|||:!! ! !!!!:..!||| ! !! !:!: ! !!! ! ! ! sLeuValLeuGluAspGluSerIleArgThrLysValLysValPheGlyProLeuSer 266789 : TCTCGTTCTGGAGGACGAGAGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGC : 266845 75 : ProLeuLeuMetAlaIleIleLysLeuSerIleMetTrpHisLysLysAsnAspIleL : 94 ! !! !!!!:!:!.! !|||!!.! !!!!! !:!!! !! :::!..!!.!!:|||! HisTrpPheValGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleA 266846 : CATTGGTTCGTCGGAGGAATTAACTACACCACACTGTTGCTACGCAGCAAAGAGATAC : 266905 95 : euProLeuLeuAsnMetIleLysAspAspTrpLeuArgProLysThrSerGluGluAr : 113 ! !! !:!!.!. !!::!! |||||| !! ! !! ! ! !!|||!!:!: rgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAspLy 266906 : GCGGTTGCGTAGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAA : 266962 114 : gAsnValMetIleLysGlnAlaArgIleAlaArgIleLeuThrIlePheCysCysCys : 132 !.!.||||||:!:|||.!.|||||||||!.!||| !:!!.!!|||||||||...... sGlnValMetLeuLysAsnAlaArgIleGlyArgTyrIleAlaIlePheCysAlaAla 266963 : GCAGGTGATGTTGAAGAACGCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCG : 267019 133 : IleMetLeuIleSerAlaIleValIleLeuValIleProLeuPheGlyIleSerMetA : 152 .!!|||! ! !.!!!.!:!!! ! !! !|||||| !! !||| !!!:..!! PheMetGlnCysGlyValLeuGlyTyrCysValIleThrAlaPheThrMetGlnThrV 267020 : TTCATGCAATGCGGTGTTCTCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCG : 267079 153 : rgTyrArgThrAsnArgThrAspSerAspLysSerLeuProLeuGlnThrTyr<->Ty : 170 ! ! ! !|||..!||| ! !! ! !||||||! ! !..!||| ! alGluValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaValTyrLysLy 267080 : TGGAAGTCGGTAACGAGACTAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAA : 267136 171 : rValTyrAspLysGluLysSerProPhePheGluIleThrTyrValLeuGlnCysIle : 189 :!! !! !!:! |||||| !||||||..! !|||! !|||! !:!! sMetIleAlaValAspThrSerProThrAsnGluIleValLeuValSerGlnPheVal 267137 : GATGATCGCAGTTGATACCAGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTA : 267193 190 : SerAlaThrLeuSerGlyPheMetTyrSerGlyThrAspSerPheLeuThrPheLeuV : 209 |||!.! !:!! !..!! ! ! !|||.!! !|||.!! !.!! ! !!!! SerGlyPheIleValAsnSerSerValValGlyAlaPheSerLeuAlaAlaValPheA 267194 : TCAGGATTCATCGTGAATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCG : 267253 210 : alPheHisValCysGlyGlnLeuGluAsnLeu : 219 .! !|||!.!||||||||||||... ||| laAlaHisAlaCysGlyGlnLeuSerValLeu 267254 : CGGCTCACGCGTGCGGACAGCTGAGCGTGCTG : 267285 vulgar: CbirOr63NTE 16 219 . KQ414889.1 266673 267285 + 129 M 153 459 G 0 3 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266674 267285 129 + . gene_id 7 ; sequence CbirOr63NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266674 267285 . + . KQ414889.1 exonerate:protein2genome:local exon 266674 267285 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266674 267285 129 + . alignment_id 7 ; Query CbirOr63NTE ; Align 266674 17 459 ; Align 267136 170 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr63NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 289 -> 371 Target range: 291386 -> 292542 290 : SerValThrArgLeuIlePheIleGlyIleValSerPheThrThrPheThrHisMetC : 309 |||:!! !! !|||! !!:!:!! !:!!:!!!!!! ! !|||||| :!!!!: SerIleGlyIleLeuThrTyrValThrLeuLeuThrSerPheThrPhe---AsnIleL 291387 : TCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTTTCACTTTC---AACATAC : 291441 310 : ysLeuTyrCysValValGlyGluIleLeuLeuAlaHis >>>> Target Intron : 322 :!!!:!||| !|||||||||:!!||||||!.!!!. 913 bp euIlePheCysTyrValGlyGluLeuLeuLeuGlyGln++ 291442 : TGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAGgt.................. : 291482 323 : 1 >>>> CysGluAlaValTyrAspAlaAlaTyrGluTyrAsnTrpTyrThrLeuG : 338 !!...! !:!! !!|||:!!|||!!: .!.||||||!.!||| ++GlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuP 291483 : .......agGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGC : 292441 339 : luProLysLysAlaArgAsnIleLeuMetIleMetIleArgAlaAsnLysProLeuTy : 357 ! !::!|||||||||:!!|||:!!:!!:!::!: !! !.!!!!. ! |||:!! ! roArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLy 292442 : CGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAA : 292498 358 : rLeuThrAlaGlyLysLeuPheProLeuThrMetAlaMetPhe : 371 |||||||||||||||:!!||| !|||:!!:!! !! ||| sLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPhe 292499 : ACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTT : 292542 vulgar: CbirOr63NTE 289 371 . KQ414889.1 291386 292542 + 128 M 16 48 G 1 0 M 15 45 5 0 2 I 0 909 3 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291387 292542 128 + . gene_id 8 ; sequence CbirOr63NTE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291387 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291387 291479 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292542 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292542 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291387 292542 128 + . alignment_id 8 ; Query CbirOr63NTE ; Align 291387 290 48 ; Align 291435 307 45 ; Align 292393 322 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr63NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 76 -> 248 Target range: 194381 -> 194903 77 : LeuMetAlaIleIleLysLeuSerIleMetTrpHisLysLysAsnAspIleLeuProL : 96 |||:!!||||||||||||!!!!!!! ||| !!.!:!!!.!!:||| ! !! LeuLeuAlaIleIleLysPheTrpThrMetIleValAsnArgLysGluIleArgPheC 194382 : CTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCT : 194439 97 : euLeuAsnMetIleLysAspAspTrpLeuArgProLysThrSerGluGluArgAsnVa : 115 !||| !!!::!! .!.!:: ! ! !:!! !..!|||!!:|||.!.|| ysLeuLeuGluMetGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnVa 194440 : GTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGT : 194496 116 : lMetIleLysGlnAlaArgIleAlaArgIleLeuThrIlePheCysCysCysIleMet : 134 ||||! !!. |||!:!|||!.!|||.!!!!!|||! !.!.! !! ! :!! lMetThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSer 194497 : GATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCT : 194553 135 : LeuIleSerAlaIleValIleLeuValIleProLeuPheGlyIleSerMetArgTyrA : 154 ! ! !.!!|||:!: ! !! !:!!|||! !! !.!. ! ..!! !! ! !! TyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluArgIleValL 194554 : TACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCA : 194613 155 : rgThrAsnArgThrAspSerAspLysSerLeuProLeuGlnThrTyrTyrValTyrAs : 173 :! !:!!!.!!:! !..! !! ! !|||...!.!||| ! !!!:!! ysGluAspAsnSerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAl 194614 : AGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGC : 194670 174 : pLysGluLysSerProPhePheGluIleThrTyrValLeuGlnCysIleSerAlaThr : 192 ! ||| ! ||||||.!!!:!|||||||||!:!|||! !||| :!:! !::!!:! aIleGluAspSerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSer 194671 : GATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGC : 194727 193 : LeuSerGlyPheMetTyrSerGlyThrAspSerPheLeuThrPheLeuValPheHisV : 212 :!!! ! !! ! ! !!!!!|||! ! !!|||!!.:!!.!! !:!!:!!.!.||| IleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisC 194728 : ATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATT : 194787 213 : alCysGlyGlnLeuGluAsnLeuLysLysArgVal<-><->IleAspLeuAspLysPh : 229 !|||||| !!!!||| !!..!:!|||:!! |||..!:!! !! ysCysGlyLeuPheGluValThrSerArgArgMetGluThrIleSerValProThrGl 194788 : GCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGATGGAGACTATTTCTGTGCCCACTGG : 194844 230 : eHisAspPheArgAsnThrLeuSerTyrAsnIleGlnAspHisIleArgLeuIleArg : 248 ! |||.!!|||..!! !|||!!! !! !:!!||| !|||:!:!:! !|||!:! yLysAspIleArgGlyArgLeuArgAspValValGlnPheHisLeuLysAlaIleLys 194845 : GAAGGATATTCGGGGTAGACTTAGGGACGTCGTTCAGTTTCATCTGAAAGCAATTAAG : 194901 vulgar: CbirOr63NTE 76 248 . KQ414889.1 194381 194903 + 103 M 147 441 G 0 6 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194382 194903 103 + . gene_id 9 ; sequence CbirOr63NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194382 194903 . + . KQ414889.1 exonerate:protein2genome:local exon 194382 194903 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194382 194903 103 + . alignment_id 9 ; Query CbirOr63NTE ; Align 194382 77 441 ; Align 194829 224 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr63NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 321 -> 374 Target range: 280276 -> 280435 322 : CysGluAlaValTyrAspAlaAlaTyrGluTyrAsnTrpTyrThrLeuGluProLysL : 341 ||| ! !||| !! :!!.!!||| ! !:!!|||||| !||| ! !|||| CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysL 280277 : TGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGA : 280334 342 : ysAlaArgAsnIleLeuMetIleMetIleArgAlaAsnLysProLeuTyrLeuThrAl : 360 |||||!:!..!:!::!!:!!|||.!. ! !:!!|||... !!:!! ! |||||||| ysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 280335 : AAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 280391 361 : aGlyLysLeuPheProLeuThrMetAlaMetPheCysAsnLeu : 374 |||||||:!!.!! !|||:!!:!:::!! ||||||!:!:!! aGlyLysIleIleAspLeuSerLeuSerSerPheCysSerVal 280392 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTG : 280435 vulgar: CbirOr63NTE 321 374 . KQ414889.1 280276 280435 + 103 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280277 280435 103 + . gene_id 10 ; sequence CbirOr63NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280277 280435 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280435 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280277 280435 103 + . alignment_id 10 ; Query CbirOr63NTE ; Align 280277 322 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr63NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 3 -> 219 Target range: 262846 -> 263497 4 : SerPhePheIleLysIleGluIleArgLeuLysThrLeuLeuGlyIleTrpProGluA : 23 ..!!:! !:!::!!|||.!. !!||| !! !! !:!!||| !|||||| !: AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 24 : snHisGluThrLysGlnLysLysLeuMetSerAspIleArgValIleIleThrLeuAs : 42 :! !..!! !..!::!! !:!!! !!!:! ! .!!! !:!!|||:!!..!! ! ! erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 43 : nLeuIleThrTrpIleCysLeuIleProSerLeuHisSerLeuLeuLysIleTyrAsp : 61 !! !:!!! ! ! !:!!|||||||||:!!! ! !:!!:!! ! ! !!!: rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 62 : AspIleIleLeuThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuMetAlaIleI : 81 :!!.!! !:!!! !:!:.!. !||| ! !! !! !!!!:!:!.!!!:| AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 82 : leLysLeuSerIleMetTrpHisLysLysAsnAspIleLeuProLeuLeuAsnMetIl : 100 ||!!.! !!!! :!!! !! ! ! !..!!.||||||! ! !! !:!!.!. :! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 101 : eLysAspAspTrpLeuArgProLysThrSerGluGluArgAsnValMetIleLysGln : 119 ::!!!!:||||||! !! ! !! ! !! !|||!!:!:!..!:!!|||:!:|||.!. lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 120 : AlaArgIleAlaArgIleLeuThrIlePheCysCysCysIleMetLeuIleSerAlaI : 139 |||!:! !!.!||| !:!!.!! !! !|||... !.!!|||! !! ||| !! AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 140 : leValIleLeuValIleProLeuPheGlyIleSerMetArgTyrArgThrAsnArgTh : 158 !: !! ! !:!!:!! !! !||| !! !..!:!!! ! ! ! !|||..!|| etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 159 : rAspSerAspLysSerLeuProLeuGlnThrTyr<->TyrValTyrAspLysGluLys : 176 | ! ! :::! !||||||! !! !..!||| ! :!! ! !!:! ! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 177 : SerProPhePheGluIleThrTyrValLeuGlnCysIleSerAlaThrLeuSerGlyP : 196 !:!||| !|||||| ! !!.! !|||! !:!:|||!.! !:!! ! ! AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 197 : heMetTyrSerGlyThrAspSerPheLeuThrPheLeuValPheHisValCysGlyGl : 215 ! ! !|||.!! !.!!.!. !.!! ! !!!!.! !|||!.!|||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 216 : nLeuGluAsnLeu : 219 ||||.!. ||| nLeuAsnValLeu 263484 : GTTGAACGTGTTG : 263497 vulgar: CbirOr63NTE 3 219 . KQ414889.1 262846 263497 + 102 M 166 498 G 0 3 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 263497 102 + . gene_id 11 ; sequence CbirOr63NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262847 263497 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263497 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262847 263497 102 + . alignment_id 11 ; Query CbirOr63NTE ; Align 262847 4 498 ; Align 263348 170 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr63NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 332 -> 374 Target range: 206275 -> 206401 333 : AsnTrpTyrThrLeuGluProLysLysAlaArgAsnIleLeuMetIleMetIleArgA : 352 ||||||||| !||| ! !!:! ! ||||||::!!!::!!:!!|||!!: !! !: AsnTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetS 206276 : AATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGT : 206333 353 : laAsnLysProLeuTyrLeuThrAlaGlyLysLeuPheProLeuThrMetAlaMetPh : 371 !!||| ! |||:!! ! |||||||||||||||:!!||| !:!!:!!:!:|||! || erAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPh 206334 : CTAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTT : 206390 372 : eCysAsnLeu : 374 | !:!!:!! eThrAspVal 206391 : CACCGATGTA : 206401 vulgar: CbirOr63NTE 332 374 . KQ414889.1 206275 206401 + 101 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206276 206401 101 + . gene_id 12 ; sequence CbirOr63NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206276 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206276 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206276 206401 101 + . alignment_id 12 ; Query CbirOr63NTE ; Align 206276 333 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr64NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 2 -> 225 Target range: 259769 -> 260441 3 : GluTrpAlaIleGluPheAsnArgPheAsnLeuThrLeuLeuGlyIleTrpProGluA : 22 !!:!::::!:!!:!!|||||||||!:: !|||! !! !:!!||| !|||||| : AspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS 259770 : GACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTT : 259827 23 : snAsnGluAspLysGlnLysLysLeuLysSerAspIleArgValValLeuIleLeuAs : 41 ::::!... ! ::! :!! !! ! !..!:!!! !:!!:!!!!!|||! ! ! erSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTy 259828 : CATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTA : 259884 42 : nIleIleMetTrpThrSerIleIleProThrLeuHisSerLeuLeuLysIleTyrAsp : 60 !! !! !!!: !..!!!!:!:|||||| !:!!! ! !:!!||| ! !!: rSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGlu 259885 : CAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAG : 259941 61 : AspIleMetLeuThrIleAspAsnLeuGlnTyrThrLeuSerMetLeuMetAlaLeuI : 80 ..!:!: :!!! !! ! ||| ! ! ! ! !!!!:!:!.!! !| SerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysI 259942 : AGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTA : 260001 81 : leLysLeuIleIleLeuTrpHisLysLysTyrAspIleLeuProValLeuAsnMetIl : 99 ||!!.! !! !! |||! ! !:! ||||||||| ! !:!!.!. :! leAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisVa 260002 : TTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGT : 260058 100 : eLysAspAspTrpLeuArgProGlnThrSerLysGluLysAsnIleMetIleLysGln : 118 ::!!:!!|||||| !! ! ! !! !..!|||!!::!!|||:!:|||:!:!:! ! lGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyr 260059 : GGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATAC : 260115 119 : AlaArgIleAlaArgThrLeuThrIlePheSerPhePheValThrLeuMetSerGlyI : 138 |||!:!.!!!.!||| !:!!.!! !! !!!! ! !!..!! ! .!!! !: AlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValL 260116 : GCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTC : 260175 139 : leIleValSerPheLeuProLeuPheGlyIleSerLeuArgTyrArgThrAsnArgTh : 157 !: ! !!!!!!!.:!! !!:!!!!..!!! !..!:!!! ! ! ! !|||..!|| euCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluTh 260176 : TGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGAC : 260232 158 : rAspProGlyArgLeuLeuProLeuGlnThrTyr<->TyrLeuTyrAsnValAsnSer : 175 | !! !!.!|||||||||! ! !..!||| ! ||| |||||||||..! rArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAsp 260233 : GAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGAC : 260289 176 : SerProLeuTyrGluValThrPheLeuLeuGlnGlyPheSerValMetAlaPheAlaT : 195 ||||||:!! !!|||:!!..!.!!:!!:!!||| ! !!|||! !.!. ! ! !: SerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnS 260290 : AGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATT : 260349 196 : hrMetTyrSerSerMetAspThrPheMetSerValLeuValPheHisIleCysGlyGl : 214 !!! ! !.!!!!: !!:!.!! !:!!||||||..! !||| |||||||| erSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGl 260350 : CGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCA : 260406 215 : nLeuGluAsnLeuLysThrArgIleArgAsnPhe : 225 ||||.!. |||! ! ! !!|||! !.!.||| nLeuAsnValLeuMetGluTrpIleThrGluPhe 260407 : GTTGAACGTGCTCATGGAATGGATCACGGAGTTT : 260441 vulgar: CbirOr64NTE 2 225 . KQ414889.1 259769 260441 + 153 M 166 498 G 0 3 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259770 260441 153 + . gene_id 1 ; sequence CbirOr64NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259770 260441 . + . KQ414889.1 exonerate:protein2genome:local exon 259770 260441 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259770 260441 153 + . alignment_id 1 ; Query CbirOr64NTE ; Align 259770 3 498 ; Align 260271 169 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr85PNC Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 1 -> 224 Target range: 236849 -> 237512 2 : GluTrpPheIleAlaLeuAsnArgAlaCysLeuLysLeuValGlyThrTrpProGluT : 21 !!:!:: !:!! !! !|||||| !...:!!||| !:!!||||||||||||:!! AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnP 236850 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGT : 236907 22 : hrAsnGluThrAlaTrpLysThrLeuMetThrAsnIleArgValIleIleIleLeuAs : 40 !:::..!!.! ! !!:!!.!:!! :!!...||| ! !:!:||| !! !!. heSerSerAsnLeuGluArgAsnIle---SerArgIleLeuAsnValIleCysTyrTh 236908 : TCTCGTCGAACCTCGAGAGAAACATC---TCTCGAATATTAAACGTGATCTGCTACAC : 236961 41 : nLeuIleIleTrpSerCysIleIleProAlaLeuHisSerLeuValArgIleTrpGly : 59 ! !|||:!!!::||| ||| ! !:!!|||||| !:!!:!!..! ||| rAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGlu---LysGly 236962 : CGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAA---AAAGGG : 237015 60 : AspIleThrSerMetIleAspAsnLeuGlnTyrSerLeuProIleThrValSerValI : 79 !.!! !!!!! :!: ! ! ||| ! ! ! !! ! ..! !!!!!:!!| ThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleI 237016 : ACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCA : 237075 80 : leLysPheIleLeuMetTrpArgLysLysMetValLeuIleProIleLeuLysMetVa : 98 ||!..!:!! !:!!:!!! !! !::!:::! ..!:!! !! !.!!!!!!!. :! leSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMe 237076 : TCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATAT : 237132 99 : lLysThrAspTrpLeuLysLeuLysThrGluGluGluArgValValMetIleLysGln : 117 !:!!||||||||| !! ! ! :::|||:::::: ||||||:!:||| ! tGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyr 237133 : GGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTAC : 237189 118 : GlyGlnThrAlaArgAlaIleMetIleTrpAspAlaPheValMetValPheSerPheI : 137 !.!:!! !::!||| ! !|||! !.!!.!! !!!!: ! !.!!.!.: AlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleL 237190 : GCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATAC : 237249 138 : leLeuValValIleLeuProCysPheGlyIleSerIleArgTyrLeuThrAsnIleTh : 156 !! ! ! !:!!:!! !!...! ! !! ! !:!! ! :!! !|||! || euGlyTyrCysValMetThrAlaSerThrThrMetValValValValGlyAsnLysTh 237250 : TTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGAC : 237306 157 : rAspProArgArgValMetProLeuGlnThrTyrTyrValLeuTyrAspValSerAsp : 175 | ! !||||||:!!||||||! !! !||| ! ! !||| ! |||..! rThrIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThr 237307 : TACGATCTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACG : 237363 176 : SerProPheTyrGluValThrPheLeuLeuGlnSerPheGlyValIleAlaAlaAlaT : 195 !:! !!.!. !!!!::!!..! !!|||! !|||! !.!!..!! !.!! !||| !! AsnThrMetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnA 237364 : AATACTATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACA : 237423 196 : hrIleTyrThrAlaThrAspThrPheMetSerLeuLeuValPheHisIleCysGlyGl : 214 .!! ! ! !::!..! !:!.!!! ||| !|||..!! ||| ! !||||| snSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGl 237424 : ACAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCA : 237480 215 : nLeuGluAsnLeuLysThrPheIleLeuAsp : 224 ||||... :!!! ! !! ||| !||| nLeuSerValValMetLeuSerIleGluAsp 237481 : GTTGAGCGTGGTTATGTTGTCGATCGAAGAT : 237512 vulgar: CbirOr85PNC 1 224 . KQ414889.1 236849 237512 + 111 M 28 84 G 1 0 M 26 78 G 1 0 M 167 501 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236850 237512 111 + . gene_id 1 ; sequence CbirOr85PNC ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236850 237512 . + . KQ414889.1 exonerate:protein2genome:local exon 236850 237512 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236850 237512 111 + . alignment_id 1 ; Query CbirOr85PNC ; Align 236850 2 84 ; Align 236934 31 78 ; Align 237012 58 501 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr85PNC Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 316 -> 369 Target range: 292380 -> 292539 317 : LeuValIleGlnTyrAspGlyIleTyrGluAlaValCysGlnTyrGluTrpTyrLysL : 336 :!!:!! !||| !..!! !||| .!.||| !! !.!. |||||||||!!.| ValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnL 292381 : GTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATC : 292438 337 : euGluProArgGlnAlaLysAspLeuLeuAsnIleMetMetLeuThrArgArgProLe : 355 || ! !|||:!!|||:::|||:!!:!! :!::!: :!!|||!:!!.!|||:! euProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIl 292439 : TGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGAT : 292495 356 : uHisLeuThrAlaGlyLysLeuPheProMetThrIleAlaThr : 369 ! ! |||||||||||||||:!!||| !:!::!!:!: !||| eLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThr 292496 : CAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACT : 292539 vulgar: CbirOr85PNC 316 369 . KQ414889.1 292380 292539 + 102 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292381 292539 102 + . gene_id 2 ; sequence CbirOr85PNC ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292381 292539 . + . KQ414889.1 exonerate:protein2genome:local exon 292381 292539 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292381 292539 102 + . alignment_id 2 ; Query CbirOr85PNC ; Align 292381 317 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr79NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 2 -> 217 Target range: 262846 -> 263497 3 : GluTrpAlaValLysLeuAsnArgAlaGlyLeuAsnLeuIleGlyLeuTrpProThrP : 22 !!:!::::!:!!:!!:!!|||||| ! !|||!!.! !|||||| !|||||| ! AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 23 : roGlnGluSerThrArg<->GlnArgLeuIleAsnAsnIleArgIleValPheThrPh : 40 !! ..!! !:!!||| :!!|||:!!||| !:!! !|||||| !! !!: erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 41 : eLeuValValThrSerLeuLeuValProSerIleHisSerLeuIleLysThrHisSer : 59 !! !:!!:!! !||| !:!!:!!|||||||||! ! !:!!:!! ! ! !..! rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 60 : AspIleMetLeuThrIleAspAsnLeuGlnIleThrLeuProValLeuSerSerIleI : 79 :!!.!! :!!! !:!:.!. !||| ! !! ! !!!! !.!!!!:| AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 80 : leArgLeuProIlePheTrpArgArgLysLysAlaLeuThrLeuIleIleAsnMetIl : 98 ||!.!! ! !! !!.! !! !!.!!..|||! !:!! ! ! !:!:.!. :! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 99 : eValGlnAspTrpLeuThrThrLysAsnIleArgGluArgLysThrMetIleLysTrp : 117 : !:!!||||||! !! !..!! !..:!:..!!!:!:!:::! !|||:!:||| lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 118 : AlaSerArgAlaArgIlePheIleIleCysThrTyrIleIleIleValThrSerIleI : 137 |||!.! !!.!||| ! ! ! !! ! ! |||.!!!!: !|||||||||! AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 138 : leIleMetPheValIleProIlePheGlyLysSerMetThrLeuAlaLeuAsnIleTh : 156 !: !! !! !:!!:!! !! ||| !! !..!:!!! ! !! ! !||| || etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 157 : rAspSerGlyLysSerLeuProLeuSerThrPhe<->TyrIleTyrAspValThrLys : 174 | ! ! !:::! !||||||! ! !!..!!:! ! ||| ! ||| !! ! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 175 : ArgProGlnTyrGluLeuThrIleIleAsnGlnCysIleSerMetIleThrAlaAlaI : 194 !.!||| ! !!|||:!! !:!! !!..|||! !:!:||| .!!! !!.!.!! AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 195 : leLeuTyrThrGlyIleAspAsnPhePheGlyLeuLeuValPheHisIleCysGlyGl : 213 ! !..!||| ! !..!.!. !.!:!!!!!!.! !||| !|||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 214 : nLeuAsnIleVal : 217 |||||||:!::!! nLeuAsnValLeu 263484 : GTTGAACGTGTTG : 263497 vulgar: CbirOr79NTE 2 217 . KQ414889.1 262846 263497 + 128 M 25 75 G 0 3 M 140 420 G 0 3 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 263497 128 + . gene_id 1 ; sequence CbirOr79NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262847 263497 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263497 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262847 263497 128 + . alignment_id 1 ; Query CbirOr79NTE ; Align 262847 3 75 ; Align 262925 28 420 ; Align 263348 168 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr79NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 1 -> 221 Target range: 232453 -> 233119 2 : PheGluTrpAlaValLysLeuAsnArgAlaGlyLeuAsnLeuIleGlyLeuTrpProT : 21 !:!|||!::::!:!!:!!:!!|||||| ! !|||!..! !!!:||| !|||||| TyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProA 232454 : TACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGC : 232511 22 : hrProGlnGluSerThrArg<->GlnArgLeuIleAsnAsnIleArgIleValPheTh : 39 ! ! !|||!!!:!!||| |||!:!|||:!! !!.:!: !! !:!! ! rgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCy 232512 : GTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTG : 232568 40 : rPheLeuValValThrSerLeuLeuValProSerIleHisSerLeuIleLysThrHis : 58 ! !! !:!!:!!! !|||! !:!!||||||!!!|||! ! !:!!:!: ! !! sHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAsp 232569 : TCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGAC : 232625 59 : SerAspIleMetLeuThrIleAspAsnLeuGlnIleThrLeuProValLeuSerSerI : 78 !!!..!:!! ! !! !!!: ! ::!:!! !! ! !! ! !!|||! !.!! ThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyG 232626 : ACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTG : 232685 79 : leIleArgLeuProIlePheTrpArgArgLysLysAlaLeuThrLeuIleIleAsnMe : 97 !:!:!.!! ! ! !!!.! ! !!:! !!!.! !:!! !! ! !:!:.!... luLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGl 232686 : AATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACA : 232742 98 : tIleValGlnAspTrpLeuThrThrLysAsnIleArgGluArgLysThrMetIleLys : 116 !:!: !|||||||||! !!.!..!|||!!. ! !.!.||| ! !|||:!:||| nValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLys 232743 : GGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAG : 232799 117 : TrpAlaSerArgAlaArgIlePheIleIleCysThrTyrIleIleIleValThrSerI : 136 |||!.!! !!.!||| .!. ! ! !.!! .!! !!!: !|||.!!: AsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyV 232800 : AACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTG : 232859 137 : leIleIleMetPheValIleProIlePheGlyLysSerMetThrLeuAlaLeuAsnIl : 155 !! ! ! :!!:!! !! !.!! !!! !|||! ! !! !!.! !||| alGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGl 232860 : TCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGA : 232916 156 : eThrAspSerGlyLysSerLeuProLeuSerThrPhe<->TyrIleTyrAspValThr : 173 !:! !!||| ! ! !!||||||! !!!! !!:! ! :!: |||..!! ! uSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArg 232917 : GAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGA : 232973 174 : LysArgProGlnTyrGluLeuThrIleIleAsnGlnCysIleSerMetIleThrAlaA : 193 !!!||| ! !!|||:!!! !.!!:!! ||||||:!!||| !.!!! !!.! PheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValA 232974 : TTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGA : 233033 194 : laIleLeuTyrThrGlyIleAspAsnPhePheGlyLeuLeuValPheHisIleCysGl : 212 ! !:!! !..!||| ! !..!!!. !!.!:!!|||!.!.!.||| ||||| snSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGl 233034 : ACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGG : 233090 213 : yGlnLeuAsnIleValArgAsnArgLeu : 221 ||||||||||:!:|||! !:::!:!||| yGlnLeuAsnValValMetSerLysLeu 233091 : ACAGCTGAACGTGGTGATGTCGAAATTG : 233119 vulgar: CbirOr79NTE 1 221 . KQ414889.1 232453 233119 + 121 M 26 78 G 0 3 M 140 420 G 0 3 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232454 233119 121 + . gene_id 2 ; sequence CbirOr79NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232454 233119 . + . KQ414889.1 exonerate:protein2genome:local exon 232454 233119 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232454 233119 121 + . alignment_id 2 ; Query CbirOr79NTE ; Align 232454 2 78 ; Align 232535 28 420 ; Align 232958 168 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr79NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 2 -> 217 Target range: 259769 -> 260420 3 : GluTrpAlaValLysLeuAsnArgAlaGlyLeuAsnLeuIleGlyLeuTrpProThrP : 22 !!:!::::!:!!:!!!!!|||||| ! !|||!!.! !|||||| !|||||| !! AspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS 259770 : GACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTT : 259827 23 : roGlnGluSerThrArg<->GlnArgLeuIleAsnAsnIleArgIleValPheThrPh : 40 !!......!!!|||||| :!!!:!:!!|||::! !|||! !||| !!.!! !!: erSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTy 259828 : CATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTA : 259884 41 : eLeuValValThrSerLeuLeuValProSerIleHisSerLeuIleLysThrHisSer : 59 ! !..!:!! ! ! !|||:!!|||!!!:!!! ! !:!!:!! ! ! ..! rSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGlu 259885 : CAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAG : 259941 60 : AspIleMetLeuThrIleAspAsnLeuGlnIleThrLeuProValLeuSerSerIleI : 79 ..!:!: :!!! !! ! ||| ! ! !! ! !!!! !.!! !| SerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysI 259942 : AGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTA : 260001 80 : leArgLeuProIlePheTrpArgArgLysLysAlaLeuThrLeuIleIleAsnMetIl : 98 ||!.!! ! !!! !!.! ! !||| !:!! !:!! ! ! !:!:.!. :! leAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisVa 260002 : TTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGT : 260058 99 : eValGlnAspTrpLeuThrThrLysAsnIleArgGluArgLysThrMetIleLysTrp : 117 :! !.!.|||||| !! !! !! !!.. !:!!!:!:!!!...!|||:!:!:!!:: lGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyr 260059 : GGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATAC : 260115 118 : AlaSerArgAlaArgIlePheIleIleCysThrTyrIleIleIleValThrSerIleI : 137 |||!.! !!.!||| ! !! ! !! ! ! !.!!:!: ! !.!!:!!: AlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValL 260116 : GCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTC : 260175 138 : leIleMetPheValIleProIlePheGlyLysSerMetThrLeuAlaLeuAsnIleTh : 156 !: !.!.! !:!!:!! !!:!:!!..!!! !..!:!!! !! !!.! !||| || euCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluTh 260176 : TGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGAC : 260232 157 : rAspSerGlyLysSerLeuProLeuSerThrPhe<->TyrIleTyrAspValThrLys : 174 | ! !! ! ! !||||||! !:!!..!!:! ! :!: :!!|||!.! ! rArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAsp 260233 : GAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGAC : 260289 175 : ArgProGlnTyrGluLeuThrIleIleAsnGlnCysIleSerMetIleThrAlaAlaI : 194 !!!|||..! !!|||:!!..!:!!:!! |||! !:!!||| .!!! !!.! ! SerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnS 260290 : AGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATT : 260349 195 : leLeuTyrThrGlyIleAspAsnPhePheGlyLeuLeuValPheHisIleCysGlyGl : 213 ! !..!|||||| !!:!.!! !.!:!!|||..! !||| |||||||| erSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGl 260350 : CGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCA : 260406 214 : nLeuAsnIleVal : 217 |||||||:!::!! nLeuAsnValLeu 260407 : GTTGAACGTGCTC : 260420 vulgar: CbirOr79NTE 2 217 . KQ414889.1 259769 260420 + 121 M 25 75 G 0 3 M 140 420 G 0 3 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259770 260420 121 + . gene_id 3 ; sequence CbirOr79NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259770 260420 . + . KQ414889.1 exonerate:protein2genome:local exon 259770 260420 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259770 260420 121 + . alignment_id 3 ; Query CbirOr79NTE ; Align 259770 3 75 ; Align 259848 28 420 ; Align 260271 168 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr79NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 280 -> 365 Target range: 264534 -> 264867 281 : AspGluGlyAsnAspIleSerValThrArgLeuSerPheLeuLeuLeuIleIleIleS : 300 .!.||| !!.!...! ...::: ...|||::! ! !!!!:!!|||:!:|||| GlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIleLeuIleS 264535 : CAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATACTGATAT : 264592 301 : erMetIleValHisMetSerIleTyrCysAlaValGlyGluAlaLeuMetThrGlu : 319 ||||| !! !:!!!!:! !:!! ||| !:!!|||||| !|||! !::: erMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThrGluGln++ 264593 : CAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACTGAGcaggt : 264649 320 : >>>> Target Intron 1 >>>> IleAsnGlyIleHisTyrAlaValTyrAspC : 329 78 bp !!!. !:!! ! ! !.!|||||| ! ++CysLysLysValGlyGluValValTyrMetS 264650 : .........................agTGTAAGAAAGTTGGTGAGGTGGTTTACATGT : 264757 330 : ysGluTrpTyrIleLeuAspProLysAsnAlaLysAspLeuIleProPheIleIleLy : 348 .!.|||||| !||| ! !|||:!! ! |||||||||! !.!!|||:!!!: erAsnTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLeuIleIleLeuAr 264758 : CGAATTGGTATTACTTACCCTACAAAGATATCCTTGATCTGATTCTCATCATTTTAAG : 264814 349 : sValSerGluProIleTyrPheThrAlaGlyLysValPheProIleThrMet : 365 ! !|||! ! !.!! ! |||||||||||||||:!!.!!! !!!::!!||| gSerSerValValPheLysPheThrAlaGlyLysIleLeuHisMetSerMet 264815 : ATCCAGCGTGGTGTTTAAATTCACCGCTGGAAAGATACTTCACATGTCCATG : 264867 vulgar: CbirOr79NTE 280 365 . KQ414889.1 264534 264867 + 107 M 38 114 5 0 2 I 0 74 3 0 2 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264535 264867 107 + . gene_id 4 ; sequence CbirOr79NTE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264535 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264535 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264726 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264867 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264867 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264535 264867 107 + . alignment_id 4 ; Query CbirOr79NTE ; Align 264535 281 114 ; Align 264727 319 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr80PN Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 287 -> 369 Target range: 258288 -> 258624 288 : ArgLeuSerPheProPheMetIleIleIleSerLeuLeuIleHisMetSerIleTyrC : 307 ...|||||| !|||||||||:!!||||||||| ...:::::: ::: | AsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPheAsnIlePheValIleC 258289 : aatttgagttcgtaCTTTATGATACTCATATcactttctttcaatatttttgtaatat : 258346 308 : ysAlaValGlyGluMetLeuMetAlaGlu >>>> Target Intron 1 >>>> : 317 || !:!!||||||!!:|||! ! !:!! 90 bp ysTyrIleGlyGluIleLeuThrGluGln++ ++ 258347 : gttACATAGGTGAAATATTAACAGAACAGgt.........................ag : 258464 318 : CysAsnGlyIleTyrHisAlaValTyrGluCysGluTrpTyrSerLeuAspProLysG : 336 |||!!. !:!! ! !!!.!|||||| ! !!:||||||! !||| ! !|||. CysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspLysA 258465 : TGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAAA : 258523 337 : luAlaLysAspLeuIleProPheMetIleLysValSerGluProValCysPheThrAl : 355 .! ! ||||||||| ! ! !!: !::! !|||! ! !||| .!!||||| rgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleThrAl 258524 : GAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGC : 258580 356 : aGlyLysIlePheProIleThrMetThrThrLeuCysAsnLeu : 369 |||||||...||| ::::!!!!: !|||!!! !!:!!:!! aGlyLysPhePheHisMetSerIleTyrThrPheSerAspVal 258581 : GggaaaattctttcacatGTCCATTTACACATTCAGCGATGTG : 258624 vulgar: CbirOr80PN 287 369 . KQ414889.1 258288 258624 + 112 M 29 87 5 0 2 I 0 86 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258289 258624 112 + . gene_id 1 ; sequence CbirOr80PN ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 258289 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258289 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258289 258624 112 + . alignment_id 1 ; Query CbirOr80PN ; Align 258289 288 87 ; Align 258466 317 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr80PN Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 319 -> 365 Target range: 292401 -> 292539 320 : IleTyrHisAlaValTyrGluCysGluTrpTyrSerLeuAspProLysGluAlaLysA : 339 ||| |||||| !|||!!: |||||||||!:!||| !::!:!!|||:::| IleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgArgLysAlaArgA 292402 : ATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGGCTCGTG : 292459 340 : spLeuIleProPheMetIleLysValSerGluProValCysPheThrAlaGlyLysIl : 358 ||:!!:!!! ! ! :!: !! !..!!.!.!.|||:!! .!!|||||||||||||| spIleValLeuValLeuAlaIleThrLysHisProIleLysLeuThrAlaGlyLysIl 292460 : ACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGGCAAAAT : 292516 359 : ePheProIleThrMetThrThr : 365 |||| !:!!:!!:!!!.!||| ePheValLeuSerLeuAsnThr 292517 : ATTCGTTCTCTCGTTGAACACT : 292539 vulgar: CbirOr80PN 319 365 . KQ414889.1 292401 292539 + 104 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292402 292539 104 + . gene_id 2 ; sequence CbirOr80PN ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292402 292539 . + . KQ414889.1 exonerate:protein2genome:local exon 292402 292539 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292402 292539 104 + . alignment_id 2 ; Query CbirOr80PN ; Align 292402 320 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr83NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 4 -> 223 Target range: 226933 -> 227596 5 : AlaValGlnLeuAsnArgAlaSerLeuHisLeuLeuGlyIleTrpProAsnProGluG : 24 ::!:!!|||||||||||| ! !||| ! ! !|||||||||||||||::: !!...: SerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgL 226934 : AGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCA : 226991 25 : luAsnProLys<->LysLysLeuMetSerAsnIleArgValPheValThrPheValLe : 42 !!!:! !!::! !!:!! !.!.||| :!:! !! !|||:!! !!:!!.!|| ysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLe 226992 : AAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCT : 227048 43 : uValIleSerLeuLeuValProSerIleHisSerLeuIleLysIleArgSerAspIle : 61 |:!!! !! ! !|||||| !!||| ! ! !:!!:!! ! !!.!! ! ! uMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAla 227049 : GATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCT : 227105 62 : MetMetThrIleAspAsnLeuGlnTyrThrLeuProValLeuSerAlaIleIleArgL : 81 ! |||:!: ! ! :!! ! !! ! ! !! !! !:!!:!!:!!!:!! TyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuLysT 227106 : TACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGT : 227165 82 : euAlaIlePheTrpTrpArgLysGluValLeuMetProIleMetAsnMetValMetGl : 100 !:!!!!:!!. !!::!.!:!!!!:! !:!!:!: ! !:!:.!. !:!!! yrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIleLysTr 227166 : ACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATG : 227222 101 : uAspTrpLeuLysSerLysThrIleTyrGluArgAsnThrMetIleLysTrpAlaLeu : 119 !|||||| !!!.! !!:! !:!: ! !!:||||||..!|||:!:! !!::|||! ! pAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyr 227223 : GGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTAT : 227279 120 : ArgGluArgIleIleIleThrIleThrTyrLeuIleIleMetMetValIleIleLeuL : 139 !! !|||! !:!:||||||||| ! !!!.!!:!!.!.! ...:::.... TyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheValPheP 227280 : TACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttt : 227339 140 : euPheGlyMetSerIlePheGlyLysSerMetArgLeuThrSerAsnIleThrAspSe : 158 ..::: !:!: ! !.!!..! .!!! ! !|||..!:!! !!.! !!|| heTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSe 227340 : tctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAG : 227396 159 : rTyrArgSerLeuProValGln<->ThrTyrTyrIleTyrAspValThrLysArgPro : 176 ||||! !..!:!!||| !!! ! !! ! !||| !|||||| ! ! !!!||| rTyrIleGlnMetProPheProPheProLysIleIleAlaAspValArgTyrSerPro 227397 : TTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCT : 227453 177 : GlnTyrGluLeuThrIleIleSerGlnTyrIleSerLeuIleIleAlaAlaMetLeuT : 196 !!|||:!! !.!! !|||!:!:!!!!! !|||:!: ! ! :!! PheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuHisGlyValT 227454 : TTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCA : 227513 197 : yrThrGlyIleAspAsnPhePheGlyLeuLeuValPheHisIleCysGlyGlnLeuAs : 215 :!!!.! ! !!:!.!. !.!||||||!.! !!||| !|||||||||:!!!! hrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGl 227514 : CGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGA : 227570 216 : pIleMetArgTyrArgLeuLysHis : 223 ::!::!! !! ! !!||| !||| uValLeuValSerTrpLeuGlyHis 227571 : GGTGTTGGTGTCCTGGCTGGGACAT : 227596 vulgar: CbirOr83NTE 4 223 . KQ414889.1 226933 227596 + 126 M 23 69 G 0 3 M 138 414 G 0 3 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226934 227596 126 + . gene_id 1 ; sequence CbirOr83NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226934 227596 . + . KQ414889.1 exonerate:protein2genome:local exon 226934 227596 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226934 227596 126 + . alignment_id 1 ; Query CbirOr83NTE ; Align 226934 5 69 ; Align 227006 28 414 ; Align 227423 166 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr59PN Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 200 -> 276 Target range: 264561 -> 264867 201 : ArgLeuLeuPheLeuPheLeuIleIleIleSerMetLeuValHisMetGlyIleTyrC : 220 ...||| ! ! !|||:!!|||:!:|||||||||! !! !:!!!!: !:!! | AsnLeuThrThrTyrPheMetIleLeuIleSerMetCysGlyAsnIlePheLeuMetC 264562 : aatttgacTACATATTTCATGATACTGATATCAATGTGCGGCAACATTTTTCTAATGT : 264619 221 : ysAlaValGlyGluAlaLeuIleSerGlu >>>> Target Intron 1 >>>> : 230 || !:!!|||||| !|||! !..!::: 78 bp ysTyrIleGlyGluIleLeuThrGluGln++ ++ 264620 : GTTATATCGGCGAGATATTGACTGAGcaggt.........................ag : 264725 231 : CysAsnGlyIleTyrTyrAlaValTyrAspPheGluTrpTyrTyrLeuAspProLysG : 249 |||!!. !:!! ! ! !.!|||||| ! .!.|||||||||||| ! !|||! CysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrLysA 264726 : TGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACAAAG : 264784 250 : luAlaLysAspLeuIleProPheIleIleLysValSerGluProValTyrPheThrAl : 268 !: ! |||||||||! !.!!|||:!!!:! !|||! ! ! !! ! |||||||| spIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheThrAl 264785 : ATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCACCGC : 264841 269 : aGlyLysValPheProValThrMet : 276 |||||||:!!.!!! !:!!:!!||| aGlyLysIleLeuHisMetSerMet 264842 : TGGAAAGATACTTCACATGTCCATG : 264867 vulgar: CbirOr59PN 200 276 . KQ414889.1 264561 264867 + 125 M 29 87 5 0 2 I 0 74 3 0 2 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264562 264867 125 + . gene_id 1 ; sequence CbirOr59PN ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264562 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264562 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264726 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264867 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264867 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264562 264867 125 + . alignment_id 1 ; Query CbirOr59PN ; Align 264562 201 87 ; Align 264727 230 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr82 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 305 -> 393 Target range: 807314 -> 807578 306 : PheLeuThrIleIleSerIleThrThrHisMetGlyIleTyrCysAlaValAspGluT : 325 |||:!! !!!::!:!!!:!: !! !!!.:!! !:!!|||..! !!.!! !.!.| PheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnT 807315 : TTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACA : 807372 326 : hrLeuMetThrGlnCysAsnGlyIleTyrTyrAlaValTyrAspTyrGluTrpTyrSe : 344 ||||| !:!!!:! !.!.! !||| ! |||!.!||||||! ! |||||| ! hrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrAr 807373 : CACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCG : 807429 345 : rLeuAspProLysGluAlaLysAspLeuIleLeuPheMetIleLysIleArgAspPro : 363 !! ! !! ! ! ! !|||!:!||||||:!!|||.!!!!: !::! !!.!...||| gCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerPro 807430 : TTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCT : 807486 364 : IleTyrPheThrAlaGlyLysIlePheProValThrMetAlaMetPheCysAsnLeuL : 383 ! !.!.||||||||||||.!! !!|||:!!!.!:!: !! ||| .!.:!!| TyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleL 807487 : TATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATAC : 807546 384 : euLysThrSerAlaSerTyrIleSerValLeu : 393 |||||.!!|||!.!||||||:!:||||||:!! euLysAlaSerGlySerTyrLeuSerValMet 807547 : TGAAAGCTTCTGGCTCGTATCTGTCTGTAATG : 807578 vulgar: CbirOr82 305 393 . KQ414940.1 807314 807578 + 135 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807315 807578 135 + . gene_id 1 ; sequence CbirOr82 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807315 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807315 807578 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807315 807578 135 + . alignment_id 1 ; Query CbirOr82 ; Align 807315 306 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr71PN Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 282 -> 368 Target range: 807320 -> 807578 283 : ValValPheValIlePheValHisMetGlyLeuTyrCysAlaValGlyGluIleLeuV : 302 :!!:!! ! ..!:!:.!.:!!!!.:!! !||||||..! !!.!|||.!.! !|||! LeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuG 807321 : CTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCG : 807378 303 : alIleGlnCysAspArgMetTyrTyrAlaIleCysSerGlnGluTrpTyrThrLeuGl : 321 ! !:! !!!:..!!!: ! ||| !! !..!... |||||| !! !.! luSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHi 807379 : AGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCA : 807435 322 : uSerLysLysAlaArgAsnLeuIlePheLeuLeuIleGlnThrLysIleProCysTyr : 340 ..!! ! !||||||:!!|||:!!!!.:!!:!! !!:! !!!. |||! ! ! sGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArg 807436 : CGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGT : 807492 341 : IleThrAlaGlyLysIlePheProMetThrMetAlaThrPheCysSerLeuIleLysT : 360 |||||||||||||||.!! !!||||||!.!:!: !|||||| ..!:!!:!:|||. IleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysA 807493 : ATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAG : 807552 361 : hrSerThrGlyTyrValSerValLeu : 368 !!||| !..!|||:!!||||||:!! laSerGlySerTyrLeuSerValMet 807553 : CTTCTGGCTCGTATCTGTCTGTAATG : 807578 vulgar: CbirOr71PN 282 368 . KQ414940.1 807320 807578 + 120 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807321 807578 120 + . gene_id 1 ; sequence CbirOr71PN ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807321 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807321 807578 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807321 807578 120 + . alignment_id 1 ; Query CbirOr71PN ; Align 807321 283 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr70NTE Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 318 -> 377 Target range: 4381 -> 4204 319 : GlnCysAspArgMetTyrTyrAlaIleCysSerGlnLysTrpTyrThrLeuAspSerLysLy : 339 |||||| !:!:!: ! ! !.!:!!! !! ! ! ! |||||| !||| ..!!:!!: GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 340 : sIleLysAsnLeuIleLeuLeuLeuIleArgThrLysIleProCysTyrIleThrAlaGlyL : 360 !||| :!!|||||||||:!!:!!! !|||:!!!!.:!: ! ! ! ||||||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 361 : ysValPheProMetThrMetAlaThrPheCysAsnLeuValGluThrSerVal : 377 ||:::||| |||:!!:!: !|||||| !!:!!:!! !||||||!:!:!! ysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeu 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTT : 4205 vulgar: CbirOr70NTE 318 377 . LHQN01027980.1 4381 4204 - 108 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4205 4381 108 - . gene_id 1 ; sequence CbirOr70NTE ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4205 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4205 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4205 4381 108 - . alignment_id 1 ; Query CbirOr70NTE ; Align 4382 319 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr69NI Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 286 -> 344 Target range: 4381 -> 4207 287 : GlnCysAspArgMetTyrHisAlaIleCysSerGlnLysTrpTyrAsnLeuAspSerLysLy : 307 |||||| !:!:!: !.!.!.!:!!! !! ! ! ! |||||| !!||| ..!!:!!: GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 308 : sAlaLysAsnLeuIleLeuLeuLeuIleArgThrLysValSerCysTyrIleThrAlaGlyL : 328 ! ! :!!|||||||||:!!:!!! !|||:!!!!.||| ! ! ! ||||||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 329 : ysValPheProMetThrMetSerThrPheCysAsnLeuValLysThrSer : 344 ||:::||| |||:!!:!:! !|||||| !!:!!:!! !:!!|||!:! ysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 4208 vulgar: CbirOr69NI 286 344 . LHQN01027980.1 4381 4207 - 101 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4208 4381 101 - . gene_id 1 ; sequence CbirOr69NI ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4208 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4208 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4208 4381 101 - . alignment_id 1 ; Query CbirOr69NI ; Align 4382 287 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr104NTE Target: KQ414601.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold45, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 323 -> 384 Target range: 1068357 -> 1066764 324 : ValTyrGluAlaAlaTyrGluTyrAsnTrpTyrThrLeuGluSerLysLysAlaAr : 342 ||| !|||||| !|||!!: !.!.||| ! !|||..! !:::!!. !!: ValThrGluAlaTyrTyrAspThrGluTrpGlnGluLeuSerValArgAsnGlnLy 1068357 : GTGACCGAAGCGTACTATGATACCGAGTGGCAAGAATTATCGGTCCGTAATCAAAA : 1068303 343 : gAsnLeuLeuMetIleMetIleArgAlaAsnLysProLeuTyrLeuThrAlaGlyL : 361 ! ||||||:!: !||| ! !!.!...!:! !!||||||||||||||||||| sLeuLeuLeuLeuAlaMetArgSerGlyArgArgThrLeuTyrLeuThrAlaGlyL 1068302 : GCTGTTGCTTCTTGCCATGCGTTCTGGACGAAGAACGTTATACCTTACAGCTGGAA : 1068246 362 : ysLeuPheProMetThrMetAlaMetPheCysAsn >>>> Target Intron : 373 ||:!!!:! !.!.:!!:!! ! ||| !:!! 1410 bp ysValTyrAsnPheSerLeuTyrGlyPheIleHis++ 1068245 : AAGTGTACAATTTCTCCTTGTACGGTTTTATCCATgt................... : 1068208 374 : 1 >>>> LeuLeuLysThrSerGlyGlyTyrIleSerValLeu : 384 :!!:!!||||||||| !||||||:!!|||:!!||| ++IleMetLysThrSerPheGlyTyrValSerLeuLeu 1068207 : ......agaTTATGAAAACCTCCTTCGGATACGTTTCTCTATTA : 1066765 vulgar: CbirOr104NTE 323 384 . KQ414601.1 1068357 1066764 - 110 M 49 147 5 0 2 I 0 1406 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414601.1 exonerate:protein2genome:local gene 1066765 1068357 110 - . gene_id 1 ; sequence CbirOr104NTE ; gene_orientation + KQ414601.1 exonerate:protein2genome:local cds 1068211 1068357 . - . KQ414601.1 exonerate:protein2genome:local exon 1068211 1068357 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local splice5 1068209 1068210 . - . intron_id 1 ; splice_site "GT" KQ414601.1 exonerate:protein2genome:local intron 1066801 1068210 . - . intron_id 1 KQ414601.1 exonerate:protein2genome:local splice3 1066801 1066802 . - . intron_id 0 ; splice_site "ag" KQ414601.1 exonerate:protein2genome:local cds 1066765 1066800 . - . KQ414601.1 exonerate:protein2genome:local exon 1066765 1066800 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local similarity 1066765 1068357 110 - . alignment_id 1 ; Query CbirOr104NTE ; Align 1068358 324 147 ; Align 1066801 373 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr89NTE Target: KQ414601.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold45, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 327 -> 385 Target range: 1068348 -> 1066764 328 : AlaAlaTyrGluTyrGluTrpTyrLysLeuGluProLysLysAlaLysValLeuVa : 346 ||| !|||!!: !|||||| ! :!!|||..! !:::!!. !|||:!!|||:! AlaTyrTyrAspThrGluTrpGlnGluLeuSerValArgAsnGlnLysLeuLeuLe 1068348 : GCGTACTATGATACCGAGTGGCAAGAATTATCGGTCCGTAATCAAAAGCTGTTGCT : 1068294 347 : lLeuLeuMetIleArgThrSerLysProLeuTyrIleThrAlaGlyLysIlePheP : 365 !||| !||| ! ! ! !!!:! !!||||||:!!||||||||||||:!:!:! uLeuAlaMetArgSerGlyArgArgThrLeuTyrLeuThrAlaGlyLysValTyrA 1068293 : TCTTGCCATGCGTTCTGGACGAAGAACGTTATACCTTACAGCTGGAAAAGTGTACA : 1068237 366 : roMetThrMetSerThrPheCysAsn >>>> Target Intron 1 >>>> I : 374 !.!.:!!:!!! ! !||| !:!! 1410 bp | snPheSerLeuTyrGlyPheIleHis++ ++I 1068236 : ATTTCTCCTTGTACGGTTTTATCCATgt.........................aga : 1066800 375 : leIleLysThrSerAlaGlyTyrValSerValLeu : 385 ||!!:||||||||| !||||||||||||:!!||| leMetLysThrSerPheGlyTyrValSerLeuLeu 1066799 : TTATGAAAACCTCCTTCGGATACGTTTCTCTATTA : 1066765 vulgar: CbirOr89NTE 327 385 . KQ414601.1 1068348 1066764 - 117 M 46 138 5 0 2 I 0 1406 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414601.1 exonerate:protein2genome:local gene 1066765 1068348 117 - . gene_id 1 ; sequence CbirOr89NTE ; gene_orientation + KQ414601.1 exonerate:protein2genome:local cds 1068211 1068348 . - . KQ414601.1 exonerate:protein2genome:local exon 1068211 1068348 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local splice5 1068209 1068210 . - . intron_id 1 ; splice_site "GT" KQ414601.1 exonerate:protein2genome:local intron 1066801 1068210 . - . intron_id 1 KQ414601.1 exonerate:protein2genome:local splice3 1066801 1066802 . - . intron_id 0 ; splice_site "ag" KQ414601.1 exonerate:protein2genome:local cds 1066765 1066800 . - . KQ414601.1 exonerate:protein2genome:local exon 1066765 1066800 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local similarity 1066765 1068348 117 - . alignment_id 1 ; Query CbirOr89NTE ; Align 1068349 328 138 ; Align 1066801 374 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr102PNI Target: KQ414601.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold45, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 282 -> 343 Target range: 1068357 -> 1066764 283 : IleTyrAspAlaAlaTyrGluTyrAsnTrpTyrThrLeuGluProLysGluThrLy : 301 :!: !!!:||| !|||!!: !.!.||| ! !|||..! !:::.!. !|| ValThrGluAlaTyrTyrAspThrGluTrpGlnGluLeuSerValArgAsnGlnLy 1068357 : GTGACCGAAGCGTACTATGATACCGAGTGGCAAGAATTATCGGTCCGTAATCAAAA : 1068303 302 : sAsnLeuLeuMetIleMetIleArgAlaAsnLysProLeuTyrLeuThrAlaGlyL : 320 | ||||||:!: !||| ! !!.!...!:! !!||||||||||||||||||| sLeuLeuLeuLeuAlaMetArgSerGlyArgArgThrLeuTyrLeuThrAlaGlyL 1068302 : GCTGTTGCTTCTTGCCATGCGTTCTGGACGAAGAACGTTATACCTTACAGCTGGAA : 1068246 321 : ysLeuPheProMetThrMetAlaThrPheCysAsn >>>> Target Intron : 332 ||:!!!:! !.!.:!!:!! ! !||| !:!! 1410 bp ysValTyrAsnPheSerLeuTyrGlyPheIleHis++ 1068245 : AAGTGTACAATTTCTCCTTGTACGGTTTTATCCATgt................... : 1068208 333 : 1 >>>> LeuLeuLysThrSerGlyGlyTyrIleSerValLeu : 343 :!!:!!||||||||| !||||||:!!|||:!!||| ++IleMetLysThrSerPheGlyTyrValSerLeuLeu 1068207 : ......agaTTATGAAAACCTCCTTCGGATACGTTTCTCTATTA : 1066765 vulgar: CbirOr102PNI 282 343 . KQ414601.1 1068357 1066764 - 110 M 49 147 5 0 2 I 0 1406 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414601.1 exonerate:protein2genome:local gene 1066765 1068357 110 - . gene_id 1 ; sequence CbirOr102PNI ; gene_orientation + KQ414601.1 exonerate:protein2genome:local cds 1068211 1068357 . - . KQ414601.1 exonerate:protein2genome:local exon 1068211 1068357 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local splice5 1068209 1068210 . - . intron_id 1 ; splice_site "GT" KQ414601.1 exonerate:protein2genome:local intron 1066801 1068210 . - . intron_id 1 KQ414601.1 exonerate:protein2genome:local splice3 1066801 1066802 . - . intron_id 0 ; splice_site "ag" KQ414601.1 exonerate:protein2genome:local cds 1066765 1066800 . - . KQ414601.1 exonerate:protein2genome:local exon 1066765 1066800 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local similarity 1066765 1068357 110 - . alignment_id 1 ; Query CbirOr102PNI ; Align 1068358 283 147 ; Align 1066801 332 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr108NI Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 161 -> 225 Target range: 1307370 -> 1307178 162 : LeuMetProMetGlnSerTyrTyrLeuTyrAspSerAspGlnSerProLeuTyrGl : 180 ::::!:|||! :!! ||| ! |||! ! !|||||||||!:!|| MetValProAsnAlaAlaArgTyrGlyThrAspIleThrAlaSerProLeuPheGl 1307370 : atgGTACCTAATGCTGCTAGGTATGGAACAGATATCACAGCATCTCCTCTCTTCGA : 1307316 181 : uIleSerPheValLeuGlnAlaAlaCysValValSerThrAlaAlaLeuPheSerG : 199 ||||:!!||||||! !||| ! !...|||!.!! !..!||||||! ! !|||| uIleAlaPheValCysGlnLeuIleAlaValAlaPheValAlaAlaSerThrSerG 1307315 : AATCGCTTTCGTTTGTCAACTGATTGCGGTTGCATTTGTGGCCGCCTCAACCTCAG : 1307259 200 : lyIleAspAsnPheTrpGlyLeuThrValSerHisIleCysGlyGlnLeuGluAsn : 217 ||:!:|||...! !! ! !|||:!!! !|||:!!! !||||||!!!:!! lyLeuAspGlySerCysMetThrThrIleLeuHisValSerGlyGlnPheLysLeu 1307258 : GCTTGGATGGATCATGTATGACCACGATTTTACACGTATCTGGACAATTCAAATTA : 1307205 218 : LeuGlnThrArgIleThrSerLeu : 225 :!!...||| !!:!!!:!!.!:!! IleSerThrTrpValSerLysMet 1307204 : ATCAGTACGTGGGTCAGCAAAATG : 1307179 vulgar: CbirOr108NI 161 225 . KQ414608.1 1307370 1307178 - 100 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1307179 1307370 100 - . gene_id 1 ; sequence CbirOr108NI ; gene_orientation . KQ414608.1 exonerate:protein2genome:local cds 1307179 1307370 . - . KQ414608.1 exonerate:protein2genome:local exon 1307179 1307370 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1307179 1307370 100 - . alignment_id 1 ; Query CbirOr108NI ; Align 1307371 162 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr106NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 544 Query range: 1 -> 251 Target range: 203453 -> 204296 2 : TyrGluTrpAlaThrGluLeuAsnArgIleAsnLeuThrLeuLeuGlyLeuTrpProG : 21 !:!|||||||||..!..!:!!|||||| !!:!|||! !:!!:!!||||||||| !| PheGluTrpAlaValArgMetAsnArgSerSerLeuArgIleIleGlyLeuTrpPheG 203454 : TTCGAATGGGCAGTTCGGATGAATCGCTCTAGTTTGAGAATAATTGGTCTTTGGTTTG : 203511 22 : luAsnAsnGluThrLysGlnLysLysLeuMetSerAspIleArgValIleLeuIlePh : 40 ||.!.:!!.!..!! |||...::: :::||| !!!: !||| ! luGluAspHisAlaGlyThrMetLysPheLeuArgLysLeuArgAsnMetGlyIleVa 203512 : AAGAAGATCACGCTggaacgatgaaatttttaagaaaattacgcAATATGGGGATCGT : 203568 41 : eAsnIleIlePheTrpSerCysIleIleProThrLeuHisSerLeuLeuLysIleTyr : 59 ||||||.!!!:: !|||:!!:!!||| !|||:!!||||||:!!||| !! ! lLeuIleIleLeuPheValCysValLeuProCysLeuTyrSerLeuIleLysGlnCys 203569 : GCTGATAATCCTCTTCGTTTGTGTACTTCCTTGCCTCTACTCTTTGATCAAACAATGT : 203625 60 : AspAspIleMetSerValIleAspAsnLeuGlnTyrThrLeuProPheLeuIleAlaV : 79 |||..!:!!|||:!!|||||||||||||||..!||||||:!!|||!!. !|||.!!: AspSerLeuMetAlaValIleAspAsnLeuSerTyrThrIleProLeuThrIleThrL 203626 : GACAGTTTAATGGCGGTGATAGATAATCTTTCATATACTATTCCTTTGACAATAACAC : 203685 80 : alIleLysLeuPheIleIleTrpGlnLysLysTyr{G} >>>> Target Intron : 91 !!!!:|||! !.!!:!!|||! !...|||||| {!} 93 bp euMetLysTyrIleValIleLeuSerLysLysGlu{V}++ 203686 : TGATGAAGTATATCGTTATATTGAGTAAAAaggaa{g}gt.................. : 203724 92 : 1 >>>> {lu}ValLeuProLeuLeuAsnMetIleLysAspAspTrpLeuArgPro : 106 { }:!!|||||||||:!!||||||||| !!!:|||||| !!:! ! ++{al}LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeu 203725 : .......ag{TT}CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTG : 203859 107 : LysThrSerLysGluArgAsnValMetLeuLysGlnAlaArgIleAlaArgIlePheT : 126 ||||||..! ||||||:!!||||||:!!:!!!:!.!!||||||.!!||| ! !! LysThrAspPheGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrS 203860 : AAAACGGATTTCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCA : 203919 127 : hrIlePheGlyPheLeuLeuIleGlnIleSerAlaIleIleValLeuPheLeuProLe : 145 :!|||.!..!!!:! !|||||| ! !:!!!.!!!:.!!:!!:!! !!|||||| erIleLeuSerTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProAr 203920 : GTATACTGAGTTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAG : 203976 146 : uPheGlyIleSerMetArgTyrThrThrAsnArgThrAspProGlyArgMetLeuPro : 164 ! !||||||!!!! ||||||..!||||||..!|||:!! ! !!:!:!:!!!||| gThrGlyIleThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPhePro 203977 : AACCGGTATTACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCG : 204033 165 : LeuGlnThrTyrTyrLeuTyrAsnValAsnSerSerProLeuTyrGluIleThrPheP : 184 :!!! |||||||||:::|||::::::::!..!!!!|||! !!:!||||||! !|||. ValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheL 204034 : GTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTC : 204093 185 : heLeuGlnSerPheSerValMetAlaGlySerThrMetTyrSerGlyThrAspThrPh : 203 !!||||||! ! !!!!:!!:!! ! !:!! ! |||! !|||..!|||!.!|| euLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPh 204094 : TCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTT : 204150 204 : eMetSerValIleValPheHisValCysGlyGlnLeuGluAsnLeuLysThrArgIle : 222 |.!..!!:!!:!::!!.!!|||:!!|||||||||||||||||||||:::||||||:!! ePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeu 204151 : CTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTT : 204207 223 : ArgThrLeuAspLysPheGlnAsnPheAlaGlyAlaLeuSerAlaSerValLysAspH : 242 !!.!:!! ! ! !!.:!!!.!|||! ! !! !||| !.!!!!!|||:!!|||| AlaAsnIleLysHisLeuGluThrPheAspArgIleLeuValThrThrValGluAspH 204208 : GCAAACATAAAACATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATC : 204267 243 : isIleArgLeuIleArgAlaIleIleIle : 251 ||:!:|||||||||||| !! !:!!||| isValArgLeuIleArgPheAsnValIle 204268 : ATGTGCGACTTATTAGGTTTAACGTTATC : 204296 vulgar: CbirOr106NTE 1 251 . KQ414617.1 203453 204296 + 544 M 89 267 S 0 1 5 0 2 I 0 89 3 0 2 S 1 2 M 160 480 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203454 204296 544 + . gene_id 1 ; sequence CbirOr106NTE ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203454 203721 . + . KQ414617.1 exonerate:protein2genome:local exon 203454 203721 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 203722 203723 . + . intron_id 1 ; splice_site "gt" KQ414617.1 exonerate:protein2genome:local intron 203722 203814 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 203813 203814 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 203815 204296 . + . KQ414617.1 exonerate:protein2genome:local exon 203815 204296 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203454 204296 544 + . alignment_id 1 ; Query CbirOr106NTE ; Align 203454 2 267 ; Align 203817 92 480 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr106NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 316 -> 373 Target range: 204763 -> 204934 317 : LeuValIleGlnPheAspGlyIleTyrGluAlaValCysGlnTyrGluTrpTyrLysL : 336 ||| !|||:!!! !!!:! !:!!|||! |||!.!! !:!!! !||||||! !!.| LeuSerIleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnL 204764 : ttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATT : 204821 337 : euLysProLysGlnAlaLysAspLeuMetAsnIleMetMetGlnThrLysArgProLe : 355 ||||| !!!!.:!!||||||..!|||!!: |||||| ::!.!!:!!|||||||| euLysSerAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLe 204822 : TGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCT : 204878 356 : uAsnLeuThrAlaGlyLysLeuPheProMetThrIleAlaMetLeuCysAsnLeu : 373 | !||||||||||||||||||||||||||||||!!: !! !!!!||||||:!! uCysLeuThrAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsnVal 204879 : CTGTTTAACCGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: CbirOr106NTE 316 373 . KQ414617.1 204763 204934 + 139 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204764 204934 139 + . gene_id 2 ; sequence CbirOr106NTE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204764 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204764 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204764 204934 139 + . alignment_id 2 ; Query CbirOr106NTE ; Align 204764 317 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr103NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 358 Query range: 90 -> 245 Target range: 203816 -> 204284 91 : IleAlaProValLeuLysMetValLysGluAspTrpLeuLysPheLysThrGluAspG : 110 :!! !|||:!!:!!!!.|||:!! !||||||||| !|||!!.||||||!!: !| LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspPheG 203817 : CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATTTCG : 203874 111 : luArgAsnIleMetIleArgArgAlaArgIleAlaArgIleIleThrIleCysGlyTy : 129 |||||:!!:!:||||||!:!|||.!!||||||.!!||| !! !!:!||| .!!|| luArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSerTy 203875 : AAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAGTTA : 203931 130 : rValValMetPheGlySerPheIlePheAlaValValLeuProPhePheGlyIleSer : 148 |!.!:!!!!:||| !:!! ! !!:||| !:!!||||||||| !||||||!!! rAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIleThr 203932 : TGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATTACC : 203988 149 : LeuArgHisMetThrAsnIleThrAspProGlyLysLeuMetProLeuGlnSerTyrT : 168 !|||:!!:!:|||||| !|||:!! ! !||||||.!.|||:!!! :::|||| ThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrTyrT 203989 : ACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttatt : 204048 169 : yrIleTyrAspIleAsnAsnSerProIleTyrGluIleThrTyrPheIleGlnGlyIl : 187 ||||||||||||||::!.!.!!!||| !!:!||||||! !!:!.!!:!!||| ! yrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAl 204049 : atatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGC : 204105 188 : eSerLeuMetLeuAlaAlaThrValTyrSerSerThrAspAsnPheLeuGlyLeuLeu : 206 !!!!|||:!!||| !||| ! !|||! !.!!..!|||||||||!!!|||:!!||| aThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeu 204106 : CACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTG : 204162 207 : ValLeuHisValCysGlyGlnLeuGluAsnLeuArgLysArgPheLeuLeuLeuAspG : 226 :!!||||||:!!||||||||||||||||||||||||! !|||.!! ! !:!! ! ! IleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysH 204163 : ATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAAC : 204222 227 : ln<->AspAspPheLysAsnSerLeuSerTyrAsnValHisAspHisArgArgLeuIl : 244 !. !!: !||| ! ..!! !||| ! !!..|||.!.|||||| !|||||||| isLeuGluThrPheAspArgIleLeuValThrThrValGluAspHisValArgLeuIl 204223 : ATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCGACTTAT : 204279 245 : eLys : 245 |!:! eArg 204280 : TAGG : 204284 vulgar: CbirOr103NTE 90 245 . KQ414617.1 203816 204284 + 358 M 136 408 G 0 3 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203817 204284 358 + . gene_id 1 ; sequence CbirOr103NTE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203817 204284 . + . KQ414617.1 exonerate:protein2genome:local exon 203817 204284 . + . insertions 3 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203817 204284 358 + . alignment_id 1 ; Query CbirOr103NTE ; Align 203817 91 408 ; Align 204228 227 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr103NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 314 -> 371 Target range: 204763 -> 204934 315 : LeuValIleGlnCysAsnGluPheTyrLysAlaAlaCysGluTyrLysTrpTyrGluL : 334 ||| !|||:!!! !.!.||| ! ||| ||||||! !|||! !:!!|||! .!.| LeuSerIleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnL 204764 : ttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATT : 204821 335 : euGlnProLysGlnValGlnSerLeuLeuIleIleMetValHisAlaAsnArgProLe : 353 ||:!! !!!!.:!!!.!:!!||||||:!!:!!||||||!.!...|||.!.|||||||| euLysSerAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLe 204822 : TGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCT : 204878 354 : uTyrLeuThrAlaGlyLysLeuPheProMetThrMetSerThrPheCysAsnMet : 371 |! !||||||||||||||||||||||||||||||||| !||||||||||||:!: uCysLeuThrAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsnVal 204879 : CTGTTTAACCGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: CbirOr103NTE 314 371 . KQ414617.1 204763 204934 + 161 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204764 204934 161 + . gene_id 2 ; sequence CbirOr103NTE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204764 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204764 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204764 204934 161 + . alignment_id 2 ; Query CbirOr103NTE ; Align 204764 315 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr99NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 382 Query range: 89 -> 280 Target range: 203813 -> 204484 90 : AlaLeuLeuSerIleLeuAsnMetMetAlaAsnAspTrpIleAlaPheLysLeuAspT : 109 !.!|||||| !!:!!:!!||||||!!:|||.!.|||||| ! !!!.||| !||| ValLeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspP 203814 : GTTCTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATT : 203871 110 : hrGlnArgAsnValMetMetLysTrpAlaArgIleAlaArgLeuIleValThrCysGl : 128 !:!!|||:!!||||||!!::!! ! .!!||||||.!!||| !! ! !! ! .! heGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSe 203872 : TCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAG : 203928 129 : yTyrMetLeuThrGlyPheGlyIleIleValValThrIlePheProTyrCysGlyLeu : 147 !||| !|||! ! ! !!.!:!!!!: !!:!!! !:!!.!.||| !|||:!! rTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIle 203929 : TTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATT : 203985 148 : ProPheArgHisLeuSerAsnLeuThrAspArgAspLysGlnLeuProIleGluAlaT : 167 !! !|||:!!:!!!!!||| !|||:!!! ! ! |||! !!!|||:!: ...| ThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrT 203986 : ACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaactt : 204045 168 : yrTyrPheTyrAsnThrAspProSerProGlnPheGluLeuThrPheLeuIleGlnAl : 186 |||||...|||::: ..! !!!!||| ! ||||||:!!! !||||||:!!||| yrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMe 204046 : attatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAAT : 204102 187 : aMetThrMetPheLeuIleAlaIleIleTyrIleSerValAspAlaPheLeuGlyLeu : 205 ! |||:!: ! |||!!:|||:!! !||||||.!!|||||| !|||!!!|||:!! tAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIle 204103 : GGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATA : 204159 206 : ValIleLeuHisThrCysGlyGlnLeuGluAsnPheLysTyrGlnLeuValSerMetV : 225 :!!|||||||||! !||||||||||||||||||.!!::: !:!|||!.!!:!!!: LeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleL 204160 : TTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAA : 204219 226 : alAlaSerAspAsnPheAspGlyAlaLeuArgAsnSerValIleThrHisValArgLe : 244 ! !! !!!:!.!|||||| !! !||| !!.!!!!||| ! !||||||||||| ysHisLeuGluThrPheAspArgIleLeuValThrThrValGluAspHisValArgLe 204220 : AACATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCGACT : 204276 245 : uIle{Ar} >>>> Target Intron 1 >>>> {g}PheThrAsnThrIleGlu : 252 ||||{||} 98 bp {|} ..!:!!..!|||||| uIle{Ar}++ ++{g}AlaValAspValIleGlu 204277 : TATT{AG}gt.........................ag{A}GCGGTCGATGTGATCGAA : 204398 253 : AspIlePheAlaLeuMetMetLeuGlyLeuValPheTyrPheGlyIleValPheCysL : 272 ..!||||||.!!:!!:!::!:|||!.!|||:!!||||||||||||! ! !! !|||: SerIlePheThrMetLeuValLeuAlaLeuLeuPheTyrPheGlyThrPheAlaCysI 204399 : AGTATATTTACGATGTTAGTCCTCGCGCTGTTATTCTATTTCGGCACATTTGCTTGCA : 204458 273 : euTyrGlyPheLeuLeuLeuSerVal : 280 !!||||||.!.||||||:!!!!!||| leTyrGlyLeuLeuLeuMetThrVal 204459 : TTTATGGACTATTATTAATGACCGTA : 204484 vulgar: CbirOr99NTE 89 280 . KQ414617.1 203813 204484 + 382 M 156 468 S 0 2 5 0 2 I 0 94 3 0 2 S 1 1 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203814 204484 382 + . gene_id 1 ; sequence CbirOr99NTE ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203814 204283 . + . KQ414617.1 exonerate:protein2genome:local exon 203814 204283 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 204284 204285 . + . intron_id 1 ; splice_site "GT" KQ414617.1 exonerate:protein2genome:local intron 204284 204381 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 204380 204381 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 204382 204484 . + . KQ414617.1 exonerate:protein2genome:local exon 204382 204484 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203814 204484 382 + . alignment_id 1 ; Query CbirOr99NTE ; Align 203814 90 468 ; Align 204383 247 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr114 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 348 Query range: 115 -> 272 Target range: 203813 -> 204284 116 : AlaLeuSerProLeuIleAspMetIleAlaArgAspTrpMetArgAlaLysMetLysG : 135 !.!|||! !||||||:!!:!!|||||||||..!|||||| !:! !|||! ! ! ValLeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspP 203814 : GTTCTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATT : 203871 136 : luGluArgAspValMetLeuLysArgAlaLysThrThrArgIleLeuAlaIleCysGl : 154 |||||||||||||||:!!:!!|||.!!::!! !|||||| ! !::!||| .! heGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSe 203872 : TCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAG : 203928 155 : yGlyValLeuIleLeuLeuThrLeuValPheGlyLeuGlyPheSerSerLeuGlyMet : 173 ! !!.!||||||!!! !.!!:!!:!!||| !:!!! !.!. !!!!! !|||!!: rTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIle 203929 : TTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATT : 203985 174 : SerLeuArgLeuValThrAsnLeuThrAspProGlyArgProLeuProIleGlnThrT : 193 !!! !|||! !||||||||| !|||:!! ! !!:!! !!!!|||:!:! |||| ThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrT 203986 : ACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaactt : 204045 194 : yrTyrLeuHisAspValThrArgSerProGlnPheGluLeuThrPheLeuAlaGlnGl : 212 |||||::::::|||::::!!..!!!!||| ! ||||||:!!! !|||||| !||| yrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMe 204046 : attatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAAT : 204102 213 : yIleAlaLeuThrIleSerGlyIleSerTyrThrGlyValAspAsnPheLeuGlyLeu : 231 ! !.!!|||..!:!!! !!.!:!!!!!|||! !|||||||||||||||!!!|||:!! tAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIle 204103 : GGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATA : 204159 232 : LeuMetLeuHisIleCysGlyGlnMetGluAsnLeuHisLeuArgValArgAsnLeuA : 251 |||!!:||||||||||||||||||:!!|||||||||!.! !|||:!! !|||:!!! LeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleL 204160 : TTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAA : 204219 252 : rgArgAspProAspPheLysAlaThrLeuLysTyrAsnValArgAspHisIleArgLe : 270 :!!.! ! !||| ! !! !||| ! !!..|||..!||||||:!:||||| ysHisLeuGluThrPheAspArgIleLeuValThrThrValGluAspHisValArgLe 204220 : AACATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCGACT : 204276 271 : uIleArg : 272 ||||||| uIleArg 204277 : TATTAGG : 204284 vulgar: CbirOr114 115 272 . KQ414617.1 203813 204284 + 348 M 157 471 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203814 204284 348 + . gene_id 1 ; sequence CbirOr114 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203814 204284 . + . KQ414617.1 exonerate:protein2genome:local exon 203814 204284 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203814 204284 348 + . alignment_id 1 ; Query CbirOr114 ; Align 203814 116 471 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr108NI Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 356 Query range: 91 -> 248 Target range: 203816 -> 204287 92 : LeuIleLeuIleLeuArgMetIleLysGluAspTrpLeuGlnProLysThrThrLysG : 111 |||:!:! !:!!:!!!.!|||||| !||||||||| !:!! !|||||| ! : LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspPheG 203817 : CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATTTCG : 203874 112 : lnArgHisIleMetValLysHisAlaArgSerAlaArgPheIleMetIlePheGlyTy : 130 !!||| !!:!:|||:!!:!!!...!!|||! !.!!||| ! !! |||.!..!!|| luArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSerTy 203875 : AAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAGTTA : 203931 131 : rLeuThrIleIleSerSerPheIleLeuLeuValPheLeuProCysPheGlyValSer : 149 | ! !|||.!!!!!:!! ! !!:!!!:!!:!! !!|||||| ! !|||:!!!!! rAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIleThr 203932 : TGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATTACC : 203988 150 : IleArgTyrLeuLysAsnMetThrAsnSerAlaArgLeuMetProMetGlnSerTyrT : 169 ! !||||||:!!! !||| ||||||! ! !!:!|||.!.|||:!!! :::|||| ThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrTyrT 203989 : ACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttatt : 204048 170 : yrLeuTyrAspSerAspGlnSerProLeuTyrGluIleSerPheValLeuGlnAlaAl : 188 ||:::|||||| ..!:!!!!!|||! !!:!||||||! !|||:!!|||||| !|| yrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAl 204049 : atatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGC : 204105 189 : aCysValValSerThrAlaAlaLeuPheSerGlyIleAspAsnPheTrpGlyLeuThr : 207 | !:!!|||! !! !||| !! !!:!! !|||:!!|||||||||!::|||:!! ! aThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeu 204106 : CACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTG : 204162 208 : ValSerHisIleCysGlyGlnLeuGluAsnLeuGlnThrArgIleThrSerLeuAspM : 227 :!! !|||||||||||||||||||||||||||!::||||||:!!.!!!:!:!! ! IleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysH 204163 : ATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAAC : 204222 228 : etPheLysAspPheAspSerThrLeuSerTyrSerValIleAspHisIleArgLeuIl : 246 !!.:!! !|||||| !!! !||| ! !!!!||| !||||||:!:|||||||| isLeuGluThrPheAspArgIleLeuValThrThrValGluAspHisValArgLeuIl 204223 : ATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCGACTTAT : 204279 247 : eArgPhe : 248 ||||||| eArgPhe 204280 : TAGGTTT : 204287 vulgar: CbirOr108NI 91 248 . KQ414617.1 203816 204287 + 356 M 157 471 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203817 204287 356 + . gene_id 1 ; sequence CbirOr108NI ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203817 204287 . + . KQ414617.1 exonerate:protein2genome:local exon 203817 204287 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203817 204287 356 + . alignment_id 1 ; Query CbirOr108NI ; Align 203817 92 471 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr109PNI Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 319 Query range: 90 -> 245 Target range: 203816 -> 204284 91 : IleLeuProLeuLeuAsnMetIleLysAspAspTrpLeuArgProLysThrSerGluG : 110 :!!|||||||||:!!||||||||| !!!:|||||| !!:! !||||||..! | LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspPheG 203817 : CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATTTCG : 203874 111 : luArgSerValMetIleLysGlnAlaArgIleAlaArgIleLeuThrIlePheGlyCy : 129 |||||..!|||||||||:!!!:!.!!||||||.!!||| ! !!:!|||.!..!!! luArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSerTy 203875 : AAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAGTTA : 203931 130 : sPheIleMetLeuIleSerValIlePheAlaLeuValPheProLeuPheGlyIleSer : 148 ! :!!!!:!!!! !:!!|||!!:||| !:!!|||.!.||| ! !||||||!!! rAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIleThr 203932 : TGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATTACC : 203988 149 : MetArgTyrArgThrAsnArgThrAspProAspLysSerLeuProPheGlnThrCysT : 168 ! |||||| !||||||..!|||:!! ! ! ||| !!!!||| ! ! ||| | ThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrTyrT 203989 : ACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttatt : 204048 169 : yrValTyrAspLysAspLysSerProPhePheGluIleThrTyrIleLeuGlnSerIl : 187 ||:::|||||| ..!:!!!!!|||!:!|||||||||! !!:!:!!||||||! ! yrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAl 204049 : atatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGC : 204105 188 : eSerSerMetLeuLeuAlaPheMetTyrSerSerThrAspSerPheLeuSerLeuLeu : 206 !!!!! !:!!|||:!!|||.!! |||! !.!!..!|||!:!|||!!!.!!:!!||| aThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeu 204106 : CACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTG : 204162 207 : ValPheHisValCysGlyGlnLeuGluAsnLeuLysLysArgValIle<->UnkUnkU : 225 :!!.!!|||:!!|||||||||||||||||||||:::! !|||:!! ! IleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysH 204163 : ATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAAC : 204222 226 : nkUnkUnkUnkUnkUnkUnkUnkLeuSerTyrAsnValArgAspHisIleArgLeuLe : 244 ... ||| ! !!..|||..!||||||:!:||||||:! isLeuGluThrPheAspArgIleLeuValThrThrValGluAspHisValArgLeuIl 204223 : ATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCGACTTAT : 204279 245 : uArg : 245 !||| eArg 204280 : TAGG : 204284 vulgar: CbirOr109PNI 90 245 . KQ414617.1 203816 204284 + 319 M 132 396 G 0 3 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203817 204284 319 + . gene_id 1 ; sequence CbirOr109PNI ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203817 204284 . + . KQ414617.1 exonerate:protein2genome:local exon 203817 204284 . + . insertions 3 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203817 204284 319 + . alignment_id 1 ; Query CbirOr109PNI ; Align 203817 91 396 ; Align 204216 223 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr96NC Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 336 Query range: 92 -> 246 Target range: 203825 -> 204287 93 : LeuIleLysMetIleGluGluAspTrpLeuArgValLysLysGluAlaGluArgGluV : 112 |||:!!!!.||||||! !||||||||| !!:!:!!|||! !!!: !||||||!!:| LeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspPheGluArgAspV 203826 : CTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATTTCGAAAGAGACG : 203883 113 : alMetIleArgArgAlaArgThrValArgLeuIleIleIleCysGlyTyrPheLeuMe : 131 ||||||||!:!|||.!!|||! !..!||| !! !! !||| .!!||| |||!! alMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSerTyrAlaLeuIl 203884 : TGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAGTTATGCGTTAAT : 203940 132 : tLeuPheAlaPhePheValIleIleIleLeuProSerPheGlyLeuHisPheArgArg : 150 :!!! !||| ! .!. !!!!:|||:!!||||||!!! !|||:!! ! !||| ! ePheThrAlaValMetPheMetIleValLeuProArgThrGlyIleThrThrArgTyr 203941 : ATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATTACCACTAGATAC : 203997 151 : LeuThrAsnLeuThrAspArgAsnArgLeuLeuProLeuGlnThrTyrTyrPheTyrA : 170 :!!|||||| !|||:!!! !!!.!:!|||!!!|||:!!! |||||||||...|||| ValThrAsnGluThrAsnIleLysLysLeuPheProValProThrTyrTyrIleTyrA 203998 : GTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttattatatttacg : 204057 171 : spThrAspLysSerProTyrPheGluLeuThrLeuValAlaGlnAlaLeuThrIleSe : 189 || ..!:!!!!!||||||||||||:!!! !!!!:!! !||| ! !|||:!! spIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAlaThrLeuVa 204058 : atataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGT : 204114 190 : rLeuGlyGlyIleThrTyrThrSerValAspAlaPheLeuGlyLeuThrIlePheHis : 208 !||| !!.!:!! !|||! !.!!|||||| !|||!!!|||:!! !|||.!!||| lLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeuIleLeuHis 204115 : GTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTGATCCTTCAT : 204171 209 : IleSerGlyGlnLeuGluAsnPheArgTyrGlnLeuProAsnLeuIleSerCysAspA : 228 |||!!!|||||||||||||||.!!||| !:!||| !!|||:!!! ! !! !!: IleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysHisLeuGluT 204172 : ATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAACATTTGGAAA : 204231 229 : spPheTyrSerAlaLeuArgThrAsnValGluThrHisLeuArgLeuIleArgPhe : 246 !||| !! !! !||| !|||!..|||||| !|||:!!||||||||||||||| hrPheAspArgIleLeuValThrThrValGluAspHisValArgLeuIleArgPhe 204232 : CTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCGACTTATTAGGTTT : 204287 vulgar: CbirOr96NC 92 246 . KQ414617.1 203825 204287 + 336 M 154 462 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203826 204287 336 + . gene_id 1 ; sequence CbirOr96NC ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203826 204287 . + . KQ414617.1 exonerate:protein2genome:local exon 203826 204287 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203826 204287 336 + . alignment_id 1 ; Query CbirOr96NC ; Align 203826 93 462 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr94PNC Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 328 Query range: 89 -> 247 Target range: 203813 -> 204287 90 : AlaLeuLeuSerIleIleLysMetMetAlaGluAspTrpIleAlaPheLysLeuAspT : 109 !.!|||||| !!:!!:!!!!.|||!!:|||||||||||| ! !!!.||| !||| ValLeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspP 203814 : GTTCTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATT : 203871 110 : hrGlnArgAspValMetMetLysTrpAlaArgThrAlaArgLeuIleValIleCysGl : 128 !:!!||||||||||||!!::!! ! .!!|||! !.!!||| !! ! !||| .! heGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSe 203872 : TCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAG : 203928 129 : yTyrIleValThrGlyPheGlyIleIleValValIleIleProProTyrPheGlyIle : 147 !||| :!!! ! ! !!.!:!!!!: !!:!!|||:!!! !||| !|||||| rTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIle 203929 : TTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATT : 203985 148 : ProPheArgArgLeuSerAsnLeuThrAspSerAspLysProLeuProLeuGlnThrT : 167 !! !||| !:!!!!!||| !|||:!!! ! ! |||! !!!!|||:!!! |||| ThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrT 203986 : ACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaactt : 204045 168 : yrTyrPheTyrAspThrAspProSerProGlnPheGluLeuThrPheLeuIleGlnAl : 186 |||||...|||||| ..! !!!!||| ! ||||||:!!! !||||||:!!||| yrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMe 204046 : attatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAAT : 204102 187 : aIleThrMetPheLeuAlaAlaIleSerTyrThrSerValAspAlaLeuLeuGlyLeu : 205 ! !|||:!: ! ||| !|||:!!!!!|||! !.!!|||||| !!!!!!!|||:!! tAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIle 204103 : GGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATA : 204159 206 : ValIleLeuHisThrCysGlyGlnLeuGluAsnPheLysTyrGlnLeuAlaAsnMetI : 225 :!!|||||||||! !||||||||||||||||||.!!::: !:!|||||||||!!:! LeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleL 204160 : TTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAA : 204219 226 : leAlaSerGluAsnPheAspSerAlaLeuArgAsnSerMetIleThrHisValArgLe : 244 ! !! !|||!.!|||||| !! !||| !!.!!!!:!: ! !||||||||||| ysHisLeuGluThrPheAspArgIleLeuValThrThrValGluAspHisValArgLe 204220 : AACATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCGACT : 204276 245 : uIleArgPhe : 247 |||||||||| uIleArgPhe 204277 : TATTAGGTTT : 204287 vulgar: CbirOr94PNC 89 247 . KQ414617.1 203813 204287 + 328 M 158 474 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203814 204287 328 + . gene_id 1 ; sequence CbirOr94PNC ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203814 204287 . + . KQ414617.1 exonerate:protein2genome:local exon 203814 204287 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203814 204287 328 + . alignment_id 1 ; Query CbirOr94PNC ; Align 203814 90 474 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr95NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 479 Query range: 0 -> 247 Target range: 203453 -> 204287 1 : PheValTrpValValGluLeuHisArgPheGlyLeuGluLeuValGlyLeuTrpProT : 20 |||! !|||!.!|||..!:!!:!!|||! !.!!|||..!:!!:!!||||||||| ! PheGluTrpAlaValArgMetAsnArgSerSerLeuArgIleIleGlyLeuTrpPheG 203454 : TTCGAATGGGCAGTTCGGATGAATCGCTCTAGTTTGAGAATAATTGGTCTTTGGTTTG : 203511 21 : hrIleAspLysAlaAlaLysThrSerAsnIleSerAspLeuArgGlyCysIleIlePh : 39 ! !||| ! |||... ... ::: ||||||..! ||| ! luGluAspHisAlaGlyThrMetLysPheLeuArgLysLeuArgAsnMetGlyIleVa 203512 : AAGAAGATCACGCTggaacgatgaaatttttaagaaaattacgcAATATGGGGATCGT : 203568 40 : eIleIleIleValPheValCysAlaIleProPheIleCysSerLeuIleArgValArg : 58 :!:||||||:!!|||||||||!.!:!!|||! !:!!! !|||||||||!:! ! !! lLeuIleIleLeuPheValCysValLeuProCysLeuTyrSerLeuIleLysGlnCys 203569 : GCTGATAATCCTCTTCGTTTGTGTACTTCCTTGCCTCTACTCTTTGATCAAACAATGT : 203625 59 : SerAspIleIleLeuValMetAspAsnLeuGlnValThrLeuProLeuMetValValL : 78 ..!..!:!!!!: !|||!!:|||||||||..! !|||:!!||||||! :!!..!| AspSerLeuMetAlaValIleAspAsnLeuSerTyrThrIleProLeuThrIleThrL 203626 : GACAGTTTAATGGCGGTGATAGATAATCTTTCATATACTATTCCTTTGACAATAACAC : 203685 79 : euLeuLysLeuIleIleMetArgTrpLysGlnThr{A} >>>> Target Intron : 90 ||:!!|||! !|||:!!!!: ! ! |||::: {!} 93 bp euMetLysTyrIleValIleLeuSerLysLysGlu{V}++ 203686 : TGATGAAGTATATCGTTATATTGAGTAAAAaggaa{g}gt.................. : 203724 91 : 1 >>>> {la}LeuLeuSerIleLeuAsnMetMetAlaAsnAspTrpArgValPhe : 105 {.!}|||||| !!:!!:!!||||||!!:|||.!.|||||| ! !!!. ++{al}LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeu 203725 : .......ag{TT}CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTG : 203859 106 : LysValAspThrGlnArgAspValMetLeuLysTrpAlaArgThrAlaArgPheIleV : 125 |||..!||| !:!!||||||||||||:!!:!! ! .!!|||! !.!!||| ! ! LysThrAspPheGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrS 203860 : AAAACGGATTTCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCA : 203919 126 : alThrCysGlyTyrIleMetThrGlyCysAlaValIleIleAlaIleValPheProTy : 144 !! ! .!!||| :!:! ! ! !||||||!!:.!! !||||||.!.||| erIleLeuSerTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProAr 203920 : GTATACTGAGTTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAG : 203976 145 : rPheGlyValProPheArgArgLeuSerAsnLeuThrAspSerAspLysProLeuPro : 163 !|||:!! !! !||| !:!!!!!||| !|||:!!! ! ! |||! !!!!||| gThrGlyIleThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPhePro 203977 : AACCGGTATTACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCG : 204033 164 : PheGlnAlaTyrTyrPheTyrAspThrAspProSerProGlnPheGluLeuThrPheV : 183 ! ! ...||||||...|||||| ..! !!!!||| ! ||||||:!!! !|||: ValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheL 204034 : GTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTC : 204093 184 : alPheGlnSerIleThrMetPheLeuAlaAlaValIleTyrThrSerValAspAlaLe : 202 !!.!!|||! ! !|||:!: ! ||| !|||:!! !|||! !.!!|||||| !!! euLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPh 204094 : TCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTT : 204150 203 : uLeuGlyLeuValIleLeuHisThrCysGlyGlnLeuGluAsnPheLysAspGlnLeu : 221 !!!!|||:!!:!!|||||||||! !||||||||||||||||||.!!::: !:!||| ePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeu 204151 : CTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTT : 204207 222 : AlaAsnMetAlaAlaSerLysAsnPheAspSerAlaLeuArgAsnSerValLeuThrH : 241 ||||||!!: ! !! !:!!!.!|||||| !! !||| !!.!!!!||| ! !| AlaAsnIleLysHisLeuGluThrPheAspArgIleLeuValThrThrValGluAspH 204208 : GCAAACATAAAACATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATC : 204267 242 : isValArgLeuIleArgPhe : 247 |||||||||||||||||||| isValArgLeuIleArgPhe 204268 : ATGTGCGACTTATTAGGTTT : 204287 vulgar: CbirOr95NTE 0 247 . KQ414617.1 203453 204287 + 479 M 89 267 S 0 1 5 0 2 I 0 89 3 0 2 S 1 2 M 157 471 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203454 204287 479 + . gene_id 1 ; sequence CbirOr95NTE ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203454 203721 . + . KQ414617.1 exonerate:protein2genome:local exon 203454 203721 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 203722 203723 . + . intron_id 1 ; splice_site "gt" KQ414617.1 exonerate:protein2genome:local intron 203722 203814 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 203813 203814 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 203815 204287 . + . KQ414617.1 exonerate:protein2genome:local exon 203815 204287 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203454 204287 479 + . alignment_id 1 ; Query CbirOr95NTE ; Align 203454 1 267 ; Align 203817 91 471 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr104NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 343 Query range: 90 -> 247 Target range: 203816 -> 204284 91 : IleLeuProLeuLeuAsnIleIleLysAspAspTrpLeuLysLeuLysThrSerLysG : 110 :!!|||||||||:!!|||!!:||| !!!:|||||| !||||||||||||..! | LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspPheG 203817 : CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATTTCG : 203874 111 : luArgAsnAlaMetIleLysGlnAlaArgIleAlaArgMetLeuThrIleTyrGlyTy : 129 |||||:!!!.!||||||:!!!:!.!!||||||.!!||| !!:!||| .!!|| luArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSerTy 203875 : AAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAGTTA : 203931 130 : rPheMetMetLeuMetSerValThrLeuAlaPheLeuLeuProLeuPheGlyIleSer : 148 | :!:!!:!!!! :!!|||! !!!! !.!.:!!|||||| ! !||||||!!! rAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIleThr 203932 : TGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATTACC : 203988 149 : MetArgTyrArgThrAsnArgThrAspProAsnAsnLysTyrLeuProLeuGlnThrT : 168 ! |||||| !||||||..!|||:!! ! !!.||| !!!!|||:!!! |||| ThrArgTyrValThrAsnGluThrAsn---IleLysLysLeuPheProValProThrT 203989 : ACTAGATACGTAACAAACGAAACCAAC---ATAAAAAAGCTTTTTCCGGTGCCaactt : 204045 169 : yrTyrValTyrAspLysAspLysSerProPhePheGluIleThrTyrValLeuGlnCy : 187 |||||:::|||||| ..!:!!!!!|||!:!|||||||||! !!:!:!!|||||| yrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMe 204046 : attatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAAT : 204102 188 : sIleSerLeuSerLeuAlaGlyGlyIleTyrThrSerThrAspSerPheLeuGlyVal : 206 !!!!||| !||| !!.! ! !|||! !.!!..!|||!:!|||!!!|||:!! tAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIle 204103 : GGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATA : 204159 207 : LeuValPheHisValCysGlyGlnLeuGlnAsnLeuLysGluArgValIleAsnLeuA : 226 |||:!!.!!|||:!!||||||||||||:!!||||||::: !|||:!! !|||:!! LeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleL 204160 : TTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAA : 204219 227 : spLysPheTyrAspPheArgLeuAlaLeuSerTyrAsnValArgAspHisMetArgLe : 245 ! ! !!. ! !||| !! ! !||| ! !!..|||..!||||||:!!||||| ysHisLeuGluThrPheAspArgIleLeuValThrThrValGluAspHisValArgLe 204220 : AACATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCGACT : 204276 246 : uIleArg : 247 ||||||| uIleArg 204277 : TATTAGG : 204284 vulgar: CbirOr104NTE 90 247 . KQ414617.1 203816 204284 + 343 M 67 201 G 1 0 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203817 204284 343 + . gene_id 1 ; sequence CbirOr104NTE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203817 204284 . + . KQ414617.1 exonerate:protein2genome:local exon 203817 204284 . + . insertions 0 ; deletions 1 KQ414617.1 exonerate:protein2genome:local similarity 203817 204284 343 + . alignment_id 1 ; Query CbirOr104NTE ; Align 203817 91 201 ; Align 204018 159 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr104NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 260 Query range: 280 -> 373 Target range: 204585 -> 204934 281 : MetPheSerGlnGlyArgGluPheSerValThrArgLeuThrPheIleValIleIleS : 300 !!:.!!!!!|||! !..!:!!||||||||| !|||:!!|||!:!:!!!.! !|||! IleLeuThrGlnGluGluGlnPheSerValLeuArgIleThrTyrLeuAlaCysIleP 204586 : ATACTCACCCAGGAAGAGCAATTTTCCGTATTACGAATAACCTATTTAGCCTGTATTT : 204643 301 : erLeuAsnThrPheThrHisMetCysLeuTyrCysIleValGlyGluIleLeuLeuAl : 319 !|||||||||||| !!!.! !! !||||||||||||..!|||:!!||||||:!! heLeuAsnThrPheLeuGlnThrSerLeuTyrCysIleThrGlyGlnIleLeuValAs 204644 : TTCTGAATACATTTCTTCAAACGTCTCTCTACTGTATCACAGGACAAATTTTAGTAAA : 204700 320 : aGln >>>> Target Intron 1 >>>> CysGluAlaValTyrGluAlaAlaT : 329 !||| 70 bp ! !|||! !||||||! ||||||| nGln++ ++SerGluGluValTyrValAlaAlaT 204701 : TCAGgt.........................agTCCGAAGAAGTATACGTTGCTGCGT : 204800 330 : yrGluTyrAsnTrpTyrThrLeuGluSerLysLysAlaArgAsnLeuLeuMetIleMe : 348 |||||! !.!.|||! !.!|||:!!|||!!.||||||!:!!:!|||:!!:!:||||| yrGluCysGluTrpLeuAsnLeuLysSerAsnLysAlaLysSerLeuIleLeuIleMe 204801 : ACGAATGCGAATGGTTGAATTTGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCAT : 204857 349 : tIleArgAlaAsnLysProLeuTyrLeuThrAlaGlyLysLeuPheProMetThrMet : 367 | !||||||.!.!:!||||||! !||||||||||||||||||||||||||||||||| tAlaArgAlaGlnArgProLeuCysLeuThrAlaGlyLysLeuPheProMetThrMet 204858 : GGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGcaggaaaattatttcctatGACGATG : 204914 368 : AlaMetPheCysAsnLeu : 373 !! !|||||||||:!! LeuThrPheCysAsnVal 204915 : CTAACGTTTTGCAACGTC : 204934 vulgar: CbirOr104NTE 280 373 . KQ414617.1 204585 204934 + 260 M 40 120 5 0 2 I 0 66 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204586 204934 260 + . gene_id 2 ; sequence CbirOr104NTE ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 204586 204705 . + . KQ414617.1 exonerate:protein2genome:local exon 204586 204705 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 204706 204707 . + . intron_id 1 ; splice_site "GT" KQ414617.1 exonerate:protein2genome:local intron 204706 204775 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 204774 204775 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 204776 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204776 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204586 204934 260 + . alignment_id 2 ; Query CbirOr104NTE ; Align 204586 281 120 ; Align 204776 321 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr105NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 471 Query range: 90 -> 372 Target range: 203816 -> 204934 91 : ValLeuProLeuLeuAsnMetIleLysAspAspTrpLeuArgProLysProLeuThrG : 110 :!!|||||||||:!!||||||||| !!!:|||||| !!:! !||| !! ! !| LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspPheG 203817 : CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATTTCG : 203874 111 : luArgAsnValMetIleLysGlnAlaArgIleAlaArgThrLeuThrIlePheGlyTy : 129 |||||:!!|||||||||:!!!:!.!!||||||.!!|||.!! !!:!|||.!..!!|| luArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSerTy 203875 : AAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAGTTA : 203931 130 : rPheValThrGlnLeuThrAlaIleThrValLeuPheLeuProLeuPheGlyIleSer : 148 | :!!! ! !.!!!.!!!: !:!!:!! !!|||||| ! !||||||!!! rAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIleThr 203932 : TGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATTACC : 203988 149 : MetThrTyrArgAsnAsnLysThrAspThrAspLysLeuLeuProValGlnSerTyrT : 168 ! ! !||| !!..|||:!!|||:!!! ! ! ||||||!!!||||||! :::|||| ThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrTyrT 203989 : ACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttatt : 204048 169 : yrLeuTyrAsnValSerLysSerProLeuTyrGluValThrPheValLeuGlnSerIl : 187 ||:::|||::::::|||:!!!!!|||! !!:!|||:!!! !|||:!!||||||! ! yrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAl 204049 : atatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGC : 204105 188 : eSerValMetThrAlaGlyThrThrTyrSerGlyMetAspThrTyrMetSerLeuLeu : 206 !!!!:!!:!! ! !!.! ! !|||! !|||:!:|||!.!!:!.!..!!:!!||| aThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeu 204106 : CACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTG : 204162 207 : ValPheHisValCysGlyGlnLeuGluAsnLeuArgGlyArgIleArgAsnLeuAspL : 226 :!!.!!|||:!!|||||||||||||||||||||||| !|||:!! !|||:!! ! IleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysH 204163 : ATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAAC : 204222 227 : ysPheAsnAsnPheAlaAspThrLeuSerAlaSerValLysAspHisIleArgLeuIl : 245 ! !!..!.!.!|||! ! !! !||| !.!!!!!|||:!!||||||:!:|||||||| isLeuGluThrPheAspArgIleLeuValThrThrValGluAspHisValArgLeuIl 204223 : ATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCGACTTAT : 204279 246 : e{Ar} >>>> Target Intron 1 >>>> {g}AlaIleIleIleIleAspAsp : 253 |{||} 98 bp {|}|||:!! !:!:|||!!:..! e{Ar}++ ++{g}AlaValAspValIleGluSer 204280 : T{AG}gt.........................ag{A}GCGGTCGATGTGATCGAAAGT : 204401 254 : ThrPheAsnLeuMetLeuLeuAlaLeuLeuIleTyrPheSerIleLeuPheAlaLeuT : 273 ! !|||!..:!!:!::!!||||||||||||.!!||||||.!!! !!!! !..!:!!| IlePheThrMetLeuValLeuAlaLeuLeuPheTyrPheGlyThrPheAlaCysIleT 204402 : ATATTTACGATGTTAGTCCTCGCGCTGTTATTCTATTTCGGCACATTTGCTTGCATTT : 204461 274 : yrGlyPheLeuPheValSer >>>> Target Intron 2 >>>> IleMetThr : 282 |||||.!.|||!!.:!!!!! 172 bp ||| :!! yrGlyLeuLeuLeuMetThr++ +-IleSerSer 204462 : ATGGACTATTATTAATGACCgt.........................acATTTCTTCA : 204660 283 : GlnGlyArgAsnLeuSerValAlaArgLeuLeuPheThrMetMetThrPheIleAsnT : 302 .!.! ! ! |||! ! ! !! ! !!!! !! ! ! !||| AsnValSerLeuLeuTyrHisArgThrAsnPheSerLysSerGlyLysPheGlnIleP 204661 : AACGTCTCTCTACTGTATCACAGGACAAATTTTAGTAAATCAGGTAAGTttcagattt : 204720 303 : hrPheGlyTyrMetCysLeuTyrCysLeuLeuGlyGluPheLeuValSer--GlnCys : 320 |||...:::::: ! !|||||| :::|||||| !!##:!!! ! hePheSerPheLeuTyrThrThrCysLeuHisPheGlnPheLeuCysArg##LysSer 204721 : tcttttctttcctctatACTACTTgtcttcattttcaatttctttgtCGATAAAGTCC : 204776 321 : AspGlyIleTyrGluAlaValCysGlnTyrGluTrpTyrGluLeuLysProLysGlnA : 340 !!:! !:!!|||! |||!.!! !:!!! !||||||! .!.|||||| !!!!.:!!| GluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsnLysA 204777 : GAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAACAAGG : 204836 341 : laLysAspLeuLeuAsnIleMetMetGlnThrArgArgProPheAsnLeuThrAlaGl : 359 |||||..!|||:!! |||||| ::!.!!!:!||||||.!! !||||||||||| laLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuThrAlaGl 204837 : CGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGcagg : 204893 360 : yLysLeuPheProMetThrIleAlaMetLeuCysAsnLeu : 372 |||||||||||||||||||!!: !! !!!!||||||:!! yLysLeuPheProMetThrMetLeuThrPheCysAsnVal 204894 : aaaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: CbirOr105NTE 90 372 . KQ414617.1 203816 204934 + 471 M 155 465 S 0 2 5 0 2 I 0 94 3 0 2 S 1 1 M 33 99 5 0 2 I 0 168 3 0 2 M 39 117 F 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203817 204934 471 + . gene_id 1 ; sequence CbirOr105NTE ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203817 204283 . + . KQ414617.1 exonerate:protein2genome:local exon 203817 204283 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 204284 204285 . + . intron_id 1 ; splice_site "GT" KQ414617.1 exonerate:protein2genome:local intron 204284 204381 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 204380 204381 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 204382 204481 . + . KQ414617.1 exonerate:protein2genome:local exon 204382 204481 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 204482 204483 . + . intron_id 2 ; splice_site "GT" KQ414617.1 exonerate:protein2genome:local intron 204482 204653 . + . intron_id 2 KQ414617.1 exonerate:protein2genome:local splice3 204652 204653 . + . intron_id 1 ; splice_site "AC" KQ414617.1 exonerate:protein2genome:local cds 204654 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204654 204934 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414617.1 exonerate:protein2genome:local similarity 203817 204934 471 + . alignment_id 1 ; Query CbirOr105NTE ; Align 203817 91 465 ; Align 204383 247 99 ; Align 204654 280 117 ; Align 204773 319 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr107NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 383 Query range: 91 -> 251 Target range: 203816 -> 204296 92 : ValLeuProLeuLeuAsnMetIleLysAspAspTrpLeuArgSerLysThrSerGluG : 111 :!!|||||||||:!!||||||||| !!!:|||||| !!:!! !||||||..! | LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspPheG 203817 : CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATTTCG : 203874 112 : luArgAsnValMetIleLysGlnAlaArgIleAlaArgIleLeuThrIlePheGlyCy : 130 |||||:!!|||||||||:!!!:!.!!||||||.!!||| ! !!:!|||.!..!!! luArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSerTy 203875 : AAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAGTTA : 203931 131 : sPheValThrGlnThrAlaAlaIleIleIleLeuLeuLeuSerValCysGlyIleSer : 149 ! :!!! ! ||||||!.!!!:.!!!!::!!:!!||| !! ! !||||||!!! rAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIleThr 203932 : TGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATTACC : 203988 150 : MetArgTyrArgThrAsnArgThrAspSerAspLysLeuLeuProLeuProSerTyrT : 169 ! |||||| !||||||..!|||:!!! ! ! ||||||!!!|||:!!|||:::|||| ThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrTyrT 203989 : ACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttatt : 204048 170 : yrIleTyrAspValSerAsnSerProLeuTyrGluValIlePheValLeuGlnSerPh : 188 |||||||||||:::|||.!.!!!|||! !!:!|||:!!!!:|||:!!||||||! ! yrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAl 204049 : atatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGC : 204105 189 : eSerPheMetIleAlaGlyMetMetTyrThrGlyThrAspThrPheMetSerLeuLeu : 207 !!!!!!.:!!:!! !!.!:!: |||! !|||..!|||!.!|||.!..!!:!!||| aThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeu 204106 : CACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTG : 204162 208 : IlePheHisValCysGlyGlnLeuGluAsnLeuLysAlaArgIleSerAsnPheAspL : 227 |||.!!|||:!!|||||||||||||||||||||:::.!!|||:!!:!!|||.!. ! IleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysH 204163 : ATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAAC : 204222 228 : ysLeuAsnAsnPheAlaAspThrLeuSerIleSerValLysAspHisIleArgLeuIl : 246 ! |||.!.!.!|||! ! !! !||| !! !!!!|||:!!||||||:!:|||||||| isLeuGluThrPheAspArgIleLeuValThrThrValGluAspHisValArgLeuIl 204223 : ATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCGACTTAT : 204279 247 : eArgSerIleIleVal : 251 ||||! !! !:!!:!! eArgPheAsnValIle 204280 : TAGGTTTAACGTTATC : 204296 vulgar: CbirOr107NTE 91 251 . KQ414617.1 203816 204296 + 383 M 160 480 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203817 204296 383 + . gene_id 1 ; sequence CbirOr107NTE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203817 204296 . + . KQ414617.1 exonerate:protein2genome:local exon 203817 204296 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203817 204296 383 + . alignment_id 1 ; Query CbirOr107NTE ; Align 203817 92 480 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr107NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 316 -> 375 Target range: 204763 -> 204940 317 : LeuValIleGlnTyrAspGlyIleTyrGluAlaValCysGlnTyrGluTrpTyrAsnL : 336 ||| !|||:!!! !!!:! !:!!|||! |||!.!! !:!!! !||||||! |||| LeuSerIleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnL 204764 : ttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATT : 204821 337 : euLysProLysGlnAlaLysAsnLeuLeuAsnIleMetMetGluThrLysArgProLe : 355 ||||| !!!!.:!!||||||!:!|||:!! |||||| ..!.!!:!!|||||||| euLysSerAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLe 204822 : TGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCT : 204878 356 : uHisLeuThrAlaGlyLysLeuPheProMetThrIleAlaThrLeuCysAsnLeuLeu : 374 | !||||||||||||||||||||||||||||||!!: !|||!!!||||||:!! ! uCysLeuThrAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsnValThr 204879 : CTGTTTAACCGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTCACT : 204935 375 : Gln : 375 ||| Gln 204936 : CAG : 204940 vulgar: CbirOr107NTE 316 375 . KQ414617.1 204763 204940 + 156 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204764 204940 156 + . gene_id 2 ; sequence CbirOr107NTE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204764 204940 . + . KQ414617.1 exonerate:protein2genome:local exon 204764 204940 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204764 204940 156 + . alignment_id 2 ; Query CbirOr107NTE ; Align 204764 317 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr89NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 548 Query range: 92 -> 374 Target range: 203816 -> 204934 93 : LeuValLeuValIleAsnMetIleAlaGluAspTrpIleLysAlaLysThrAspLysG : 112 |||:!!! !:!!:!!||||||||||||||||||||| !||| !||||||||| | LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspPheG 203817 : CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATTTCG : 203874 113 : luLeuTyrIleMetIleLysGlnAlaGlnAsnThrArgIleValThrMetIleGlyTy : 131 || ! !!:!:||||||:!!!:!.!!!:!! !|||||| !..!!:!!!::!:.!!|| luArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSerTy 203875 : AAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAGTTA : 203931 132 : rValPheMetValMetGlyIleThrLeuLeuValIleLeuProCysPheGlyLysSer : 150 |!.!!!.!!: !!! !.!:!!! !!!!:!!:!!:!!|||||| ! !|||! !!! rAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIleThr 203932 : TGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATTACC : 203988 151 : ValArgTyrThrThrAsnIleThrAspProAsnLysLeuLeuProLeuGlnThrTyrT : 170 ..!||||||..!|||||| !|||:!! !!!.||||||!!!|||:!!! ||||||| ThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrTyrT 203989 : ACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttatt : 204048 171 : yrLeuTyrAspLysAspGlnSerProPhePheGluLeuThrPheAlaAlaGlnThrVa : 189 ||:::|||||| ..!:!!!!!|||!:!||||||:!!! !||| ! !|||! !!. yrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAl 204049 : atatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGC : 204105 190 : lValIlePheMetSerGlyAlaThrTyrGlyGlyIleAspThrLeuLeuGlyLeuLeu : 208 !..!:!! ! :!:! !!.! ! !||| !|||:!!|||!.!!!!!!!|||:!!||| aThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeu 204106 : CACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTG : 204162 209 : IlePheHisLeuCysGlyGlnMetGluAsnLeuArgGluLysPheIleThrMetSerL : 228 |||.!!|||:!!|||||||||:!!|||||||||||| !::!.!! !!.!!!:!.! IleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysH 204163 : ATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAAC : 204222 229 : ysPheLysThrPheHisSerGlyLeuValPheIleValArgAspHisIleArgLeuIl : 247 ! !!.:!!|||||| !! !! !|||||| !! |||..!||||||:!:|||||||| isLeuGluThrPheAspArgIleLeuValThrThrValGluAspHisValArgLeuIl 204223 : ATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCGACTTAT : 204279 248 : e{Ly} >>>> Target Intron 1 >>>> {s}TyrPheAspThrIleGluSer : 255 |{!:} 98 bp {!} !!|||..!||||||||| e{Ar}++ ++{g}AlaValAspValIleGluSer 204280 : T{AG}gt.........................ag{A}GCGGTCGATGTGATCGAAAGT : 204401 256 : IlePheThrValLeuLeuLeuGlyLeuLeuIleTyrPheSerThrLeuPheCysLeuT : 275 |||||||||:!!|||:!!|||!.!||||||.!!||||||.!!|||!!! !|||:!!| IlePheThrMetLeuValLeuAlaLeuLeuPheTyrPheGlyThrPheAlaCysIleT 204402 : ATATTTACGATGTTAGTCCTCGCGCTGTTATTCTATTTCGGCACATTTGCTTGCATTT : 204461 276 : yrGlyPheLeuIleIleAla >>>> Target Intron 2 >>>> IleLeuThr : 284 |||||.!.|||:!!!!:.!! 174 bp .!!!!!! ! yrGlyLeuLeuLeuMetThr++ +-PhePheLys 204462 : ATGGACTATTATTAATGACCgt.........................atTTCTTCAAA : 204662 285 : GluArgSerGlnMetSerThrMetArgPheMetTyrLeuValSerValMetIleAsnP : 304 ...! !||| :!:||| ! !:!||| !!! :!! !! !||| . ArgLeuSerThrValSerGlnAspLysPhe******IleArg***ValSerAspPheL 204663 : CGTCTCTCTACTGTATCACAGGACAAATTTTAGTAAATCAGGTAAGTttcagattttc : 204722 305 : heCysGlyTyrMetCysLeuPheCysAlaAlaGlyGluArgLeuValThrGlnCysGl : 323 .. ::: !! !!!. ::: ... ||| !! !:!!! !|| euPhePheProLeuTyrTyrLeuSerSerPheSerIleSerLeuSerIleLysSerGl 204723 : ttttctttcctctatACTACTTgtcttcattttcaatttctttgtCGATAAAGTCCGA : 204779 324 : uAlaMetTyrTyrAlaAlaTyrGluTyrGluTrpTyrLysLeuGluProLysLysAla : 342 |! !:!:||| !||||||||||||! !||||||! !!.|||:!! !!!!.|||||| uGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsnLysAla 204780 : AGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAACAAGGCG : 204836 343 : LysValLeuValLeuLeuMetIleArgThrSerLysProLeuTyrIleThrAlaGlyL : 362 ||| !|||:!!|||:!!||| !|||.!!..!!:!||||||! !:!!|||||||||| LysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuThrAlaGlyL 204837 : AAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGcaggaa : 204896 363 : ysIlePheProMetThrMetSerThrPheCysAsnIle : 374 ||:::||||||||||||||| !||||||||||||:!! ysLeuPheProMetThrMetLeuThrPheCysAsnVal 204897 : aattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: CbirOr89NTE 92 374 . KQ414617.1 203816 204934 + 548 M 155 465 S 0 2 5 0 2 I 0 94 3 0 2 S 1 1 M 33 99 5 0 2 I 0 170 3 0 2 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203817 204934 548 + . gene_id 1 ; sequence CbirOr89NTE ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203817 204283 . + . KQ414617.1 exonerate:protein2genome:local exon 203817 204283 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 204284 204285 . + . intron_id 1 ; splice_site "GT" KQ414617.1 exonerate:protein2genome:local intron 204284 204381 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 204380 204381 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 204382 204481 . + . KQ414617.1 exonerate:protein2genome:local exon 204382 204481 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 204482 204483 . + . intron_id 2 ; splice_site "GT" KQ414617.1 exonerate:protein2genome:local intron 204482 204655 . + . intron_id 2 KQ414617.1 exonerate:protein2genome:local splice3 204654 204655 . + . intron_id 1 ; splice_site "AT" KQ414617.1 exonerate:protein2genome:local cds 204656 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204656 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203817 204934 548 + . alignment_id 1 ; Query CbirOr89NTE ; Align 203817 93 465 ; Align 204383 249 99 ; Align 204656 282 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr91NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 563 Query range: 0 -> 246 Target range: 203453 -> 204284 1 : PheGluTrpAlaThrGluLeuAsnArgTyrSerLeuGluPheIleGlyLeuTrpProL : 20 ||||||||||||..!..!:!!||||||! !||||||..!.!.|||||||||||| !: PheGluTrpAlaValArgMetAsnArgSerSerLeuArgIleIleGlyLeuTrpPheG 203454 : TTCGAATGGGCAGTTCGGATGAATCGCTCTAGTTTGAGAATAATTGGTCTTTGGTTTG : 203511 21 : ysMetGluGluThrThrArgGluLysLeuThrAlaAsnAlaArgValPheLeuLeuIl : 39 !! !!:.!..!! |||... ... ||| !.!. !:!!:! luGluAspHisAlaGlyThrMetLysPheLeuArgLysLeuArgAsnMetGlyIleVa 203512 : AAGAAGATCACGCTggaacgatgaaatttttaagaaaattacgcAATATGGGGATCGT : 203568 40 : eIleMetValThrPheValCysValIleProCysIleHisSerLeuIleArgValTrp : 58 ::!:!!::!! !||||||||||||:!!||||||:!!:!!|||||||||!:! !!! lLeuIleIleLeuPheValCysValLeuProCysLeuTyrSerLeuIleLysGlnCys 203569 : GCTGATAATCCTCTTCGTTTGTGTACTTCCTTGCCTCTACTCTTTGATCAAACAATGT : 203625 59 : GlyAspLeuMetSerMetThrAspAsnLeuGlnPheThrLeuProLeuValSerMetV : 78 ! !..!||||||:!!:!!! !|||||||||..!!:!|||:!!||||||..!! !! : AspSerLeuMetAlaValIleAspAsnLeuSerTyrThrIleProLeuThrIleThrL 203626 : GACAGTTTAATGGCGGTGATAGATAATCTTTCATATACTATTCCTTTGACAATAACAC : 203685 79 : alMetLysLeuValIleMetTrpSerLysLysAla{A} >>>> Target Intron : 90 !!||||||! !:!!:!!!!:! !||||||||| {!} 93 bp euMetLysTyrIleValIleLeuSerLysLysGlu{V}++ 203686 : TGATGAAGTATATCGTTATATTGAGTAAAAaggaa{g}gt.................. : 203724 91 : 1 >>>> {la}LeuAlaProIleLeuTyrMetIleAlaLysAspTrpLeuArgSer : 105 {.!}||| !|||:!!:!! !!|||||||||:!!|||||| !!:!! ! ++{al}LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeu 203725 : .......ag{TT}CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTG : 203859 106 : LysSerGluGluGluArgHisAsnMetIleArgCysAlaArgIleProArgMetIleI : 125 |||!!!!!: |||||| !! ||||||!:! ! .!!|||||| !!||| ! !! LysThrAspPheGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrS 203860 : AAAACGGATTTCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCA : 203919 126 : leIleCysGlyPheValIleMetPheAlaSerPheIleLeuLeuPheIleLeuProCy : 144 !||| .!!!:!!.!:!!!!:|||.!!:!! ! !!:!!!:!!.!.:!!|||||| ! erIleLeuSerTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProAr 203920 : GTATACTGAGTTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAG : 203976 145 : sPheGlyIleThrMetArgTyrIleThrAsnValThrAspProGlyLysProLeuPro : 163 !|||||||||! ||||||:!!||||||! !|||:!! ! !|||! !!!!||| gThrGlyIleThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPhePro 203977 : AACCGGTATTACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCG : 204033 164 : LeuGlnThrTyrTyrPheTyrAspThrAspGluSerProTyrPheGluLeuThrPheI : 183 :!!! |||||||||...|||||| ..!|||!!!||||||||||||:!!! !|||: ValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheL 204034 : GTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTC : 204093 184 : leAlaGlnGlyPheThrLeuMetValSerAlaMetGlyTyrThrAlaIleAspSerLe : 202 !! !||| ! !||||||:!!:!!! !|||:!: !!|||! !!.!:!!|||!:!!! euLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPh 204094 : TCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTT : 204150 203 : uPheGlyLeuLeuValPheHisValCysGlyGlnLeuGluAsnValLysGlyArgLeu : 221 !||||||:!!|||:!!.!!|||:!!||||||||||||||||||:!!::: !|||||| ePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeu 204151 : CTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTT : 204207 222 : ThrGlyProGluLysAspProAsnPheGluHisValLeuMetAsnThrIleThrAspH : 241 .!!..! !:!! ! !!.!|||!!:!.!:!!|||:!!!.!|||:!! !|||| AlaAsnIleLysHisLeuGluThrPheAspArgIleLeuValThrThrValGluAspH 204208 : GCAAACATAAAACATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATC : 204267 242 : isValArgLeuIleArg : 246 ||||||||||||||||| isValArgLeuIleArg 204268 : ATGTGCGACTTATTAGG : 204284 vulgar: CbirOr91NTE 0 246 . KQ414617.1 203453 204284 + 563 M 89 267 S 0 1 5 0 2 I 0 89 3 0 2 S 1 2 M 156 468 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203454 204284 563 + . gene_id 1 ; sequence CbirOr91NTE ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203454 203721 . + . KQ414617.1 exonerate:protein2genome:local exon 203454 203721 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 203722 203723 . + . intron_id 1 ; splice_site "gt" KQ414617.1 exonerate:protein2genome:local intron 203722 203814 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 203813 203814 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 203815 204284 . + . KQ414617.1 exonerate:protein2genome:local exon 203815 204284 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203454 204284 563 + . alignment_id 1 ; Query CbirOr91NTE ; Align 203454 1 267 ; Align 203817 91 468 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr91NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 315 -> 372 Target range: 204763 -> 204934 316 : LeuIleAlaGlnCysGluGlyValTyrGlnAlaAlaCysGluTyrHisTrpTyrAspL : 335 ||| !:!!! !|||! !|||||| ||||||! !|||! !.!.|||! :!!| LeuSerIleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnL 204764 : ttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATT : 204821 336 : euGluProLysGlnAlaArgAsnLeuIleLeuLeuMetMetArgAlaAsnLysProLe : 354 ||:!! !!!!.:!!|||!:!!:!|||||||||:!!||| ||||||.!.!:!||||| euLysSerAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLe 204822 : TGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCT : 204878 355 : uTyrValThrValGlyLysIlePheProLeuThrMetAsnAlaPheCysSerLeu : 372 |! !:!!|||!..||||||:::||||||::!|||||| .!!||||||!:!:!! uCysLeuThrAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsnVal 204879 : CTGTTTAACCGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: CbirOr91NTE 315 372 . KQ414617.1 204763 204934 + 141 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204764 204934 141 + . gene_id 2 ; sequence CbirOr91NTE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204764 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204764 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204764 204934 141 + . alignment_id 2 ; Query CbirOr91NTE ; Align 204764 316 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr102PNI Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 367 Query range: 90 -> 246 Target range: 203816 -> 204284 91 : IleLeuProLeuLeuAsnMetIleLysAspAspTrpLeuArgProLysThrSerGluG : 110 :!!|||||||||:!!||||||||| !!!:|||||| !!:! !||||||..! | LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspPheG 203817 : CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATTTCG : 203874 111 : luArgAsnValMetIleLysHisAlaArgIleAlaArgIleLeuThrIleValGlyTy : 129 |||||:!!|||||||||:!!!...!!||||||.!!||| ! !!:!|||:!!.!!|| luArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSerTy 203875 : AAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAGTTA : 203931 130 : rPheValMetLeuLeuThrLeuIlePheGlyLeuValPheProLeuPheGlyPheSer : 148 | :!!!!:!!! !.!!:!!!!:||| !:!!|||.!.||| ! !|||.!!!!! rAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIleThr 203932 : TGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATTACC : 203988 149 : IleArgTyrArgThrAsnArgThrAspProAspLysSerLeuProIleGlnThrTyrT : 168 ! !|||||| !||||||..!|||:!! ! ! ||| !!!!|||:!:! ||||||| ThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrTyrT 203989 : ACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttatt : 204048 169 : yrIleTyrAspLysAspLysSerProPhePheGluIleThrTyrIleLeuGlnSerIl : 187 ||||||||||| ..!:!!!!!|||!:!|||||||||! !!:!:!!||||||! ! yrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAl 204049 : atatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGC : 204105 188 : eSerAlaValLeuLeuAlaPheMetTyrSerSerProAspSerPheLeuSerLeuLeu : 206 !!!! !||||||:!!|||.!! |||! !.!! !|||!:!|||!!!.!!:!!||| aThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeu 204106 : CACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTG : 204162 207 : ValPheHisValCysGlyGlnLeuGluAsnLeuLysLysArgValIleAspLeuAspL : 226 :!!.!!|||:!!|||||||||||||||||||||:::! !|||:!! !:!!:!! ! IleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysH 204163 : ATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAAC : 204222 227 : ysPheGlnAspPheArgAsnValLeuSerTyrAsnValArgAsnHisIleArgLeuIl : 245 ! !!.:!! !||| !..!:!!||| ! !!..|||..!:!!|||:!:|||||||| isLeuGluThrPheAspArgIleLeuValThrThrValGluAspHisValArgLeuIl 204223 : ATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCGACTTAT : 204279 246 : eArg : 246 |||| eArg 204280 : TAGG : 204284 vulgar: CbirOr102PNI 90 246 . KQ414617.1 203816 204284 + 367 M 156 468 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203817 204284 367 + . gene_id 1 ; sequence CbirOr102PNI ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203817 204284 . + . KQ414617.1 exonerate:protein2genome:local exon 203817 204284 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203817 204284 367 + . alignment_id 1 ; Query CbirOr102PNI ; Align 203817 91 468 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr102PNI Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 168 Query range: 280 -> 332 Target range: 204778 -> 204934 281 : GluAlaIleTyrAspAlaAlaTyrGluTyrAsnTrpTyrThrLeuGluProLysGluT : 300 |||! !:!!|||! !||||||||||||! !.!.|||! !.!|||:!! !!!!.:!!. GluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsnLysA 204779 : GAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAACAAGG : 204836 301 : hrLysAsnLeuLeuMetIleMetIleArgAlaAsnLysProLeuTyrLeuThrAlaGl : 319 !!|||!:!|||:!!:!:|||||| !||||||.!.!:!||||||! !||||||||||| laLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuThrAlaGl 204837 : CGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGcagg : 204893 320 : yLysLeuPheProMetThrMetAlaThrPheCysAsnLeu : 332 |||||||||||||||||||||| !||||||||||||:!! yLysLeuPheProMetThrMetLeuThrPheCysAsnVal 204894 : aaaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: CbirOr102PNI 280 332 . KQ414617.1 204778 204934 + 168 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204779 204934 168 + . gene_id 2 ; sequence CbirOr102PNI ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204779 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204779 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204779 204934 168 + . alignment_id 2 ; Query CbirOr102PNI ; Align 204779 281 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr92NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 540 Query range: 0 -> 280 Target range: 203453 -> 204484 1 : PheValTrpAlaValGluLeuAsnArgTyrGlyLeuGluPheValGlyLeuTrpProT : 20 |||! !|||||||||..!:!!||||||! !.!!|||..!.!.:!!||||||||| ! PheGluTrpAlaValArgMetAsnArgSerSerLeuArgIleIleGlyLeuTrpPheG 203454 : TTCGAATGGGCAGTTCGGATGAATCGCTCTAGTTTGAGAATAATTGGTCTTTGGTTTG : 203511 21 : hrSerAspLysAlaAlaLysHisAsnTyrIleSerAsnLeuArgAlaTyrIleIlePh : 39 !..!||| ! |||... ...:::::: ...|||||| ! ||| ! luGluAspHisAlaGlyThrMetLysPheLeuArgLysLeuArgAsnMetGlyIleVa 203512 : AAGAAGATCACGCTggaacgatgaaatttttaagaaaattacgcAATATGGGGATCGT : 203568 40 : eIleIleIleThrPheValCysValIleProLeuIleCysSerLeuIleArgValLeu : 58 :!:|||||| !||||||||||||:!!|||! !:!!! !|||||||||!:! !! ! lLeuIleIleLeuPheValCysValLeuProCysLeuTyrSerLeuIleLysGlnCys 203569 : GCTGATAATCCTCTTCGTTTGTGTACTTCCTTGCCTCTACTCTTTGATCAAACAATGT : 203625 59 : AsnAsnIleIleLeuValIleAspAsnLeuGlnPheThrLeuSerMetMetValValL : 78 :!!!:!:!!!!: !|||||||||||||||..!!:!|||:!! !!:!!! :!!..!| AspSerLeuMetAlaValIleAspAsnLeuSerTyrThrIleProLeuThrIleThrL 203626 : GACAGTTTAATGGCGGTGATAGATAATCTTTCATATACTATTCCTTTGACAATAACAC : 203685 79 : euPheGlnPheIleIleMetArgTrpLysGlnThr{A} >>>> Target Intron : 90 ||.!.:!!!:!|||:!!!!: ! ! |||::: {!} 93 bp euMetLysTyrIleValIleLeuSerLysLysGlu{V}++ 203686 : TGATGAAGTATATCGTTATATTGAGTAAAAaggaa{g}gt.................. : 203724 91 : 1 >>>> {la}LeuLeuSerIleLeuLysMetMetAlaLysAspTrpIleValPhe : 105 {.!}|||||| !!:!!:!!!!.|||!!:|||:!!|||||| ! !!!. ++{al}LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeu 203725 : .......ag{TT}CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTG : 203859 106 : LysIleAspThrGlnArgAspValMetMetLysTrpAlaArgThrAlaArgValIleA : 125 |||! ||| !:!!||||||||||||!!::!! ! .!!|||! !.!!|||!.!! !: LysThrAspPheGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrS 203860 : AAAACGGATTTCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCA : 203919 126 : laIleCysGlyTyrIleValIleGlyPheGlyIleIleValValIleIleProProTy : 144 :!||| .!!||| :!!||| ! !!.!:!!!!: !!:!!|||:!!! !||| erIleLeuSerTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProAr 203920 : GTATACTGAGTTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAG : 203976 145 : rPheGlyIleProPheArgLysLeuSerAsnLeuThrAspArgAspLysProLeuVal : 163 !|||||| !! !||| ! :!!!!!||| !|||:!!! ! ! |||! !!!! ! gThrGlyIleThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPhePro 203977 : AACCGGTATTACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCG : 204033 164 : LeuGlnAlaTyrTyrPheTyrAspThrAspProSerProGlnPheGluLeuThrPheI : 183 :!!! ...||||||...|||||| ..! !!!!||| ! ||||||:!!! !|||: ValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheL 204034 : GTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTC : 204093 184 : lePheGlnAlaIleThrIlePheLeuAlaAlaThrSerTyrThrSerValAspAlaLe : 202 !!.!!||| ! !|||:!! ! ||| !||| !!!!|||! !.!!|||||| !!! euLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPh 204094 : TCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTT : 204150 203 : uLeuGlyLeuValIleLeuHisThrCysGlyGlnLeuGluAsnPheLysTyrGlnLeu : 221 !!!!|||:!!:!!|||||||||! !||||||||||||||||||.!!::: !:!||| ePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeu 204151 : CTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTT : 204207 222 : AlaAsnIleAlaAlaSerGluAsnPheAspGlyAlaLeuArgAsnSerValSerThrT : 241 ||||||||| ! !! !|||!.!|||||| !! !||| !!.!!!!|||..! !: AlaAsnIleLysHisLeuGluThrPheAspArgIleLeuValThrThrValGluAspH 204208 : GCAAACATAAAACATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATC : 204267 242 : yrAlaArgLeuIle{Ar} >>>> Target Intron 2 >>>> {g}PheThrAs : 249 !!!.!|||||||||{||} 98 bp {|} ..!:! isValArgLeuIle{Ar}++ ++{g}AlaValAs 204268 : ATGTGCGACTTATT{AG}gt.........................ag{A}GCGGTCGA : 204389 250 : nLysIleGluAspIlePheAlaLeuMetMetLeuGlyLeuLeuPheTyrPheGlyIle : 268 ! !||||||..!||||||.!!:!!:!::!:|||!.!||||||||||||||||||! ! pValIleGluSerIlePheThrMetLeuValLeuAlaLeuLeuPheTyrPheGlyThr 204390 : TGTGATCGAAAGTATATTTACGATGTTAGTCCTCGCGCTGTTATTCTATTTCGGCACA : 204446 269 : ValPheCysLeuPheGlyPheLeuLeuLeuSerVal : 280 !! !|||:!!!:!|||.!.||||||:!!!!!||| PheAlaCysIleTyrGlyLeuLeuLeuMetThrVal 204447 : TTTGCTTGCATTTATGGACTATTATTAATGACCGTA : 204484 vulgar: CbirOr92NTE 0 280 . KQ414617.1 203453 204484 + 540 M 89 267 S 0 1 5 0 2 I 0 89 3 0 2 S 1 2 M 155 465 S 0 2 5 0 2 I 0 94 3 0 2 S 1 1 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203454 204484 540 + . gene_id 1 ; sequence CbirOr92NTE ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203454 203721 . + . KQ414617.1 exonerate:protein2genome:local exon 203454 203721 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 203722 203723 . + . intron_id 1 ; splice_site "gt" KQ414617.1 exonerate:protein2genome:local intron 203722 203814 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 203813 203814 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 203815 204283 . + . KQ414617.1 exonerate:protein2genome:local exon 203815 204283 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 204284 204285 . + . intron_id 2 ; splice_site "GT" KQ414617.1 exonerate:protein2genome:local intron 204284 204381 . + . intron_id 2 KQ414617.1 exonerate:protein2genome:local splice3 204380 204381 . + . intron_id 1 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 204382 204484 . + . KQ414617.1 exonerate:protein2genome:local exon 204382 204484 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203454 204484 540 + . alignment_id 1 ; Query CbirOr92NTE ; Align 203454 1 267 ; Align 203817 91 465 ; Align 204383 247 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr101NC Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 484 Query range: 1 -> 246 Target range: 203453 -> 204281 2 : PheValTrpAlaValGluLeuAsnArgTyrGlyLeuGluLeuValGlyLeuTrpProP : 21 |||! !|||||||||..!:!!||||||! !.!!|||..!:!!:!!||||||||| ! PheGluTrpAlaValArgMetAsnArgSerSerLeuArgIleIleGlyLeuTrpPheG 203454 : TTCGAATGGGCAGTTCGGATGAATCGCTCTAGTTTGAGAATAATTGGTCTTTGGTTTG : 203511 22 : roIleAsnLysAlaAlaLysThrSerTyrIleSerAsnLeuArgAlaTyrIleIlePh : 40 ! !:!! ! |||... ...:::::: ...|||||| ! ||| ! luGluAspHisAlaGlyThrMetLysPheLeuArgLysLeuArgAsnMetGlyIleVa 203512 : AAGAAGATCACGCTggaacgatgaaatttttaagaaaattacgcAATATGGGGATCGT : 203568 41 : eIleIleIleThrPheValCysValIleProLeuIleCysSerLeuIleArgValLeu : 59 :!:|||||| !||||||||||||:!!|||! !:!!! !|||||||||!:! !! ! lLeuIleIleLeuPheValCysValLeuProCysLeuTyrSerLeuIleLysGlnCys 203569 : GCTGATAATCCTCTTCGTTTGTGTACTTCCTTGCCTCTACTCTTTGATCAAACAATGT : 203625 60 : AsnAsnIleIleLeuValIleAspAsnLeuGlnValThrLeuProMetMetValValL : 79 :!!!:!:!!!!: !|||||||||||||||..! !|||:!!|||:!!! :!!..!| AspSerLeuMetAlaValIleAspAsnLeuSerTyrThrIleProLeuThrIleThrL 203626 : GACAGTTTAATGGCGGTGATAGATAATCTTTCATATACTATTCCTTTGACAATAACAC : 203685 80 : euLeuLysIleIleIleMetArgTrpLysGlnThr{A} >>>> Target Intron : 91 ||:!!||| !|||:!!!!: ! ! |||::: {!} 93 bp euMetLysTyrIleValIleLeuSerLysLysGlu{V}++ 203686 : TGATGAAGTATATCGTTATATTGAGTAAAAaggaa{g}gt.................. : 203724 92 : 1 >>>> {la}LeuLeuSerIleLeuAsnMetMetAlaAsnAspTrpIleAlaPhe : 106 {.!}|||||| !!:!!:!!||||||!!:|||.!.|||||| ! !!!. ++{al}LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeu 203725 : .......ag{TT}CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTG : 203859 107 : LysValAspAlaGlnArgAspValMetMetLysTrpThrArgThrGlyArgLeuIleI : 126 |||..!||| !:!!||||||||||||!!::!! ! ||||||! ! !||| !! !! LysThrAspPheGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrS 203860 : AAAACGGATTTCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCA : 203919 127 : leIleCysGlyTyrMetMetIleGlyCysProAlaIleValAlaIleValPheProTy : 145 !||| .!!||| !:!:||| ! ! !!!.!!!: !! !||||||.!.||| erIleLeuSerTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProAr 203920 : GTATACTGAGTTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAG : 203976 146 : rPheGlyLeuProPheArgArgLeuSerAsnLeuThrAspSerAspLysProLeuPro : 164 !|||:!! !! !||| !:!!!!!||| !|||:!!! ! ! |||! !!!!||| gThrGlyIleThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPhePro 203977 : AACCGGTATTACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCG : 204033 165 : IleGlnGlyTyrTyrPheTyrAspThrAspLeuSerProGlnPheGluLeuThrPheI : 184 :!:! ||||||...|||||| ..! !!!!||| ! ||||||:!!! !|||: ValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheL 204034 : GTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTC : 204093 185 : leSerGlnAlaIleMetIleIleLeuAlaAlaValIleTyrThrSerValAspAlaLe : 203 !! !||| ! !! :!!:!:||| !|||:!! !|||! !.!!|||||| !!! euLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPh 204094 : TCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTT : 204150 204 : uLeuGlyLeuValIleLeuHisThrCysGlyGlnLeuGluAsnPheLysTyrGlnLeu : 222 !!!!|||:!!:!!|||||||||! !||||||||||||||||||.!!::: !:!||| ePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeu 204151 : CTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTT : 204207 223 : AlaSerMetAlaThrSerGluThrPheAspGlySerLeuArgAsnAsnValIleThrH : 242 |||!:!!!: ! !! !|||||||||||| !!! !||| !!.!!..||| ! !| AlaAsnIleLysHisLeuGluThrPheAspArgIleLeuValThrThrValGluAspH 204208 : GCAAACATAAAACATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATC : 204267 243 : isIleArgLeuIle : 246 ||:!:||||||||| isValArgLeuIle 204268 : ATGTGCGACTTATT : 204281 vulgar: CbirOr101NC 1 246 . KQ414617.1 203453 204281 + 484 M 89 267 S 0 1 5 0 2 I 0 89 3 0 2 S 1 2 M 155 465 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203454 204281 484 + . gene_id 1 ; sequence CbirOr101NC ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203454 203721 . + . KQ414617.1 exonerate:protein2genome:local exon 203454 203721 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 203722 203723 . + . intron_id 1 ; splice_site "gt" KQ414617.1 exonerate:protein2genome:local intron 203722 203814 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 203813 203814 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 203815 204281 . + . KQ414617.1 exonerate:protein2genome:local exon 203815 204281 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203454 204281 484 + . alignment_id 1 ; Query CbirOr101NC ; Align 203454 2 267 ; Align 203817 92 465 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr98NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 349 Query range: 89 -> 247 Target range: 203813 -> 204287 90 : ValLeuLeuSerMetValLysMetMetAlaGluAspTrpMetThrSerLysLeuAspA : 109 ||||||||| !!:!:|||!!.|||!!:|||||||||||| ! !! !||| !||| ValLeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspP 203814 : GTTCTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATT : 203871 110 : laGluArgAsnValMetIleLysHisAlaArgValAlaArgLeuIleValIleCysGl : 128 !||||||:!!|||||||||:!!!...!!|||:!!.!!||| !! ! !||| .! heGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSe 203872 : TCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAG : 203928 129 : yTyrValLeuMetValLeuAlaPheSerIleLeuIleIleLeuProCysPheGlyLeu : 147 !|||!.!|||!!: !! !||| ! ! !.!!:!!|||:!!|||||| ! !|||:!! rTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIle 203929 : TTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATT : 203985 148 : HisIleArgHisLeuThrAsnLeuThrAspArgGlyLysProLeuProLeuGlnThrT : 167 !! !|||:!!:!!|||||| !|||:!!! ! !|||! !!!!|||:!!! |||| ThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrT 203986 : ACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaactt : 204045 168 : yrTyrPheTyrAspThrAspLysSerProGlnPheGlnValThrTyrPheLeuGlnAl : 186 |||||...|||||| ..!:!!!!!||| ! |||:!!:!!! !!:!.!!|||||| yrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMe 204046 : attatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAAT : 204102 187 : aIleAlaIlePheLeuThrAlaValThrTyrThrSerValAspAlaPheLeuGlyVal : 205 ! !.!!:!! ! |||! !|||:!! !|||! !.!!|||||| !|||!!!|||:!! tAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIle 204103 : GGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATA : 204159 206 : ThrIlePheHisIleCysGlyGlnLeuGluAsnPheArgHisArgLeuThrAsnLeuI : 225 !|||.!!||||||||||||||||||||||||.!!||| ||||||.!!|||:!!! LeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleL 204160 : TTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAA : 204219 226 : leSerTyrLysAspPheAsnSerAlaLeuAlaLysAsnIleValAlaHisLeuArgLe : 244 ! !! :!! !|||:!! !! !|||!.!! !..:!!! !! !|||:!!||||| ysHisLeuGluThrPheAspArgIleLeuValThrThrValGluAspHisValArgLe 204220 : AACATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCGACT : 204276 245 : uIleArgPhe : 247 |||||||||| uIleArgPhe 204277 : TATTAGGTTT : 204287 vulgar: CbirOr98NTE 89 247 . KQ414617.1 203813 204287 + 349 M 158 474 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203814 204287 349 + . gene_id 1 ; sequence CbirOr98NTE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203814 204287 . + . KQ414617.1 exonerate:protein2genome:local exon 203814 204287 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203814 204287 349 + . alignment_id 1 ; Query CbirOr98NTE ; Align 203814 90 474 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr97NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 422 Query range: 89 -> 280 Target range: 203813 -> 204481 90 : AlaLeuLeuSerLeuValLysMetMetAlaGluAspTrpMetGluLeuLysThrAlaL : 109 !.!|||||| !!||||||!!.|||!!:|||||||||||| :!!|||||||||! ! ValLeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspP 203814 : GTTCTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATT : 203871 110 : ysGluLysAspValMetIleGlyArgAlaHisLeuAlaArgAlaIleValIleSerGl : 128 |||!:!|||||||||||| !|||.!!!..:!!.!!||||||! ! !||| !.! heGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSe 203872 : TCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAG : 203928 129 : yTyrValLeuMetValLeuAlaPheIleValValIleValLeuProTyrTyrGlyPhe : 147 !|||!.!|||!!: !! !||| ! !!: !!:!!|||||||||||| !|||.!! rTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIle 203929 : TTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATT : 203985 148 : SerLeuThrArgHisLeuThrAsnLeuThrAspProGlyLysProLeuProLeuGlnT : 167 !!! ||||||:!!:!!|||||| !|||:!! ! !|||! !!!!|||:!!! | Thr---ThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProT 203986 : ACC---ACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaa : 204042 168 : hrTyrTyrPheTyrAspIleAsnArgSerProGlnPheGluLeuThrPheLeuIleGl : 186 ||||||||...|||||||||::!..!!!!||| ! ||||||:!!! !||||||:!!|| hrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGl 204043 : cttattatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCA : 204099 187 : nAlaIleThrIlePheLeuAlaAlaValValTyrThrSerValAspAlaPheLeuGly : 205 | ! !|||:!! ! ||| !|||:!! !|||! !.!!|||||| !|||!!!||| nMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGly 204100 : AATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGA : 204156 206 : LeuThrIleLeuHisLeuCysGlyGlnLeuGluAsnPheLysGlyArgIleAlaValL : 225 :!! !|||||||||:!!||||||||||||||||||.!!::: !|||:!!||| !: IleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnI 204157 : ATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACA : 204216 226 : euSerSerCysGlnAsnPheIleArgValLeuSerAsnAsnValMetAsnHisLeuAr : 244 !!!.! !! :!!!.!||| !|||:!!||| !!.!!..||| :!!|||:!!|| leLysHisLeuGluThrPheAspArgIleLeuValThrThrValGluAspHisValAr 204217 : TAAAACATTTGGAAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCG : 204273 245 : gLeuIle{Ar} >>>> Target Intron 1 >>>> {g}PheAlaSerIleIle : 252 |||||||{||} 98 bp {|} !.!..!:!:||| gLeuIle{Ar}++ ++{g}AlaValAspValIle 204274 : ACTTATT{AG}gt.........................ag{A}GCGGTCGATGTGATC : 204395 253 : GluAspThrPheThrLeuMetMetLeuGlyLeuValPheTyrPheGlyIleValPheC : 272 |||..!! !||||||:!!:!::!:|||!.!|||:!!||||||||||||! ! !! !| GluSerIlePheThrMetLeuValLeuAlaLeuLeuPheTyrPheGlyThrPheAlaC 204396 : GAAAGTATATTTACGATGTTAGTCCTCGCGCTGTTATTCTATTTCGGCACATTTGCTT : 204455 273 : ysLeuHisGlyPheLeuLeuPheThr : 280 ||:!!:!!|||.!.||||||.!.||| ysIleTyrGlyLeuLeuLeuMetThr 204456 : GCATTTATGGACTATTATTAATGACC : 204481 vulgar: CbirOr97NTE 89 280 . KQ414617.1 203813 204481 + 422 M 59 177 G 1 0 M 97 291 S 0 2 5 0 2 I 0 94 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203814 204481 422 + . gene_id 1 ; sequence CbirOr97NTE ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203814 204283 . + . KQ414617.1 exonerate:protein2genome:local exon 203814 204283 . + . insertions 0 ; deletions 1 KQ414617.1 exonerate:protein2genome:local splice5 204284 204285 . + . intron_id 1 ; splice_site "GT" KQ414617.1 exonerate:protein2genome:local intron 204284 204381 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 204380 204381 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 204382 204481 . + . KQ414617.1 exonerate:protein2genome:local exon 204382 204481 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203814 204481 422 + . alignment_id 1 ; Query CbirOr97NTE ; Align 203814 90 177 ; Align 203991 150 291 ; Align 204383 248 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr97NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 321 -> 375 Target range: 204772 -> 204934 322 : GlnCysGluGlyIleTyrArgAlaMetCysAspLeuGluTrpTyrLysLeuGluSerA : 341 :!!! !|||! !:!!||| !||| !! !!!:! !||||||! !!.|||:!!|||! LysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerA 204773 : AAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGA : 204830 342 : rgLysAlaLysSerLeuIleProLeuMetIleArgAlaLysGlnProPheArgIleTh : 360 .!|||||||||||||||||| !:!!||| !||||||:!!::!|||.!! !!:!!|| snLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuTh 204831 : ACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAAC : 204887 361 : rAlaGlyLysIlePheProLeuThrMetThrThrPheCysSerLeu : 375 ||||||||||:::||||||::!|||||| !|||||||||!:!:!! rAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsnVal 204888 : CGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: CbirOr97NTE 321 375 . KQ414617.1 204772 204934 + 150 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204773 204934 150 + . gene_id 2 ; sequence CbirOr97NTE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204773 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204773 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204773 204934 150 + . alignment_id 2 ; Query CbirOr97NTE ; Align 204773 322 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr119PC Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 429 Query range: 0 -> 202 Target range: 1390523 -> 1392022 1 : MetGluPheAlaThrThrIleSerProGlnIleLysPheGlyLeuGlnAlaIleGl : 19 |||..! ! !! !!:!||||||! !! !:!::!!.!!||||||::! !! !|| MetSerHisAsnLysSerIleSerArgProValGluIleGlyLeuArgLeuThrGl 1390524 : ATGTCGCATAACAAAAGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGG : 1390578 20 : yIleTrpProGlySerSerTyrSerLeuLeuTyrArgAlaPheTrpThrIleThrL : 38 ||||||||||||||||||||||..!:!!:!! !|||!.! !|||! !||| !: yIleTrpProGlySerSerTyrGluIleIleValArgValThrTrpIleIleLeuM 1390579 : AATTTGGCCAGGTTCATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTA : 1390635 39 : euGlyValThrGlnThrPheGlnPheLysTyrIleIleSerCysIleLysAsnAsn : 56 !! !|||..!|||! !||||||!:!::!|||||||||!.! !:!! ! ..!!:! etThrValValGlnIlePheGlnTyrArgTyrIleIleLysHisLeuAspGlySer 1390636 : TGACAGTTGTACAAATATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGT : 1390689 57 : AsnPheProAspLeuValAspSerValSerThrThrLeuProTyrSerLeuLeuCy : 75 |||.!. !!:!!|||:!!|||||||||.!!||||||||||||||||||||||||! AsnLeuAlaAsnLeuIleAspSerValGlyThrThrLeuProTyrSerLeuLeuTy 1390690 : AATCTGGCGAACTTAATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTA : 1390746 76 : sLeuLysLeuIleIleLeuTrpLeuAsnGln{Ar} >>>> Target Intron : 86 !:::||||||||||||...||| !!!.!::{ !} 884 bp rValLysLeuIleIlePheTrpThrLysArg{Gl}++ 1390747 : TgtcaaattaattattttctggaCTAAACGT{GG}gt................... : 1390783 87 : 1 >>>> {g}LeuPheAsnAspIleLeuThrSerIleSerArgAspTrpHisAsn : 101 {!}:::|||...::::::|||..!.!!!!:|||!.!|||||| !||| ++{y}IlePheGluAsnMetLeuValGlyMetSerAsnAspTrpSerAsn 1390784 : ......ag{a}atattcgaaaatatgtTAGTGGGAATGTCTAACGATTGGAGTAAT : 1391708 102 : CysAspSerValSerPheAsnMetHisThrMetThrAsnLysAlaAsnLeuSerAr : 120 ! !...|||..!!.!|||:!!!!::!!.!!|||! !!:!||||||.!.|||:!! SerSerSerThrLysPheAspIleAsnAlaMetIleSerLysAlaGluLeuAlaTy 1391709 : TCTTCATCAACGAAATTTGACATAAACGCCATGATAAGTAAAGCTGAACTTGCGTA : 1391765 121 : gArgTyrSerMetLeuIleIleGlyValTyrTrpMetAlaValValValTyrValS : 139 !|||||||||! !:!!|||!!:.!!..!||| !!:|||||| !!!.!|||..!| rArgTyrSerLysValIleMetSerThrTyrAlaIleAlaValPheAlaTyrThrS 1391766 : TCGTTATTCGAAGGTAATTATGAGCACATATGCTATTGCCGTTTTCGCTTATACCA : 1391822 140 : erValIleMetGluPhe<-><-><->AsnTyrThrAsnGluSerAsnLysAlaGlu : 154 |||||.!!.!.|||||| :!! !! !..!|||! !:!! ! !... erValPhePheGluPheMetArgHisAspAsnAspGlyGluTyrAspLeuLysSer 1391823 : GCGTGTTTTTCGAGTTTATGCGTCACGACAACGACGGCGAATATGATTTAAAGTCT : 1391876 155 : AspHisLeuPheLeuLysMetGluPheProPheThrTyrAspValSerProIleAr : 173 .!.|||!!.:!!||||||!!:.!!||||||.!!||| !! !!!!|||! ArgGluLeuLeuMetLysMetAspLeuProPheAlaTyrTyrLysThrProThrTy 1391877 : CGAGAACTTTTGATGAAAATGGACCTCCCGTTTGCGTATTACAAAACACCGACGTA : 1391933 174 : gGluIleValMetValSerGlnPheValGlnLeuLeuSerAsnAlaSerValIleG : 192 !:!! |||.!.||| !||||||:!!|||||||||! !|||||||||!.!|||| rGlnTrpValPheValValGlnPheLeuGlnLeuLeuIleAsnAlaSerAlaIleG 1391934 : TCAATGGGTATTTGTTGTACAATTTCTTCAGCTGTTGATAAATGCATCTGCTATTG : 1391990 193 : lyMetLeuAspAlaLeuIleValThrLeuIle : 202 ||||||||||||||||||||:!!||||||:!! lyMetLeuAspAlaLeuIleIleThrLeuVal 1391991 : GTATGTTAGATGCTTTGATAATTACGTTGGTA : 1392022 vulgar: CbirOr119PC 0 202 . KQ414716.1 1390523 1392022 + 429 M 85 255 S 0 2 5 0 2 I 0 880 3 0 2 S 1 1 M 58 174 G 0 9 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390524 1392022 429 + . gene_id 1 ; sequence CbirOr119PC ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1390524 1390780 . + . KQ414716.1 exonerate:protein2genome:local exon 1390524 1390780 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1390781 1390782 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1390781 1391664 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1391663 1391664 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1391665 1392022 . + . KQ414716.1 exonerate:protein2genome:local exon 1391665 1392022 . + . insertions 9 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390524 1392022 429 + . alignment_id 1 ; Query CbirOr119PC ; Align 1390524 1 255 ; Align 1391666 87 174 ; Align 1391849 145 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr119PC Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 408 Query range: 201 -> 368 Target range: 1394161 -> 1395479 202 : IleLeuHisIleSerGlyGlnIleAspIleValCysArgGluLeuPheLysLeuPh : 220 |||!!!||||||.!!|||||||||!!:!!::!! !:!! ||| ...::: IlePheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAsnIleSe 1394162 : ATATTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaatatttc : 1394216 221 : eSerGluLysTyrGlyCysLysLeuTyrLysAlaAlaThrArgGluValIleArgA : 239 ::: ! ! ! !!:!|||! !:! !.!!|||!:!..!:!!|||!.!| rIleLysAspGluLysHisArgLeuSerArgAsnThrThrLysSerLeuIleHisA 1394217 : tattaaagATGAGAAACACAGATTATCGAGAAACACCACCAAATCATTAATTCACA : 1394273 240 : rgHisGlnAspValIleAlaLeuSerAspAsnIleGluAsnLeuPheSerTyrIle : 257 |||||!!. :!!||| ! !||||||::!||||||!:!||||||||||||||| rgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIle 1394274 : GACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACATT : 1394327 258 : AlaLeuMetGlnPhePheThrAsnThrLeuValIleCysCysIleAlaPheValIl : 276 ||||||||||||!::!!. !||||||||||||||||||||||||!.!|||:!!|| AlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGlyPheLeuIl 1394328 : GCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGATTCTTAAT : 1394384 277 : eValThr >>>> Target Intron 1 >>>> SerIleGluGlyAsnGlnAs : 285 ||||! ! 464 bp :!!.!!.!. !::: || eValIle++ ++AlaPheAsnThrAspGlyAs 1394385 : AGTAATTgt.........................agGCATTTAATACAGatggaaa : 1394875 286 : nTyrAlaMetLeuLeuLysSerLeuPhePheTyrIleAlaIleThrLeuGluAlaP : 304 | ...:::|||:::|||.!!||||||||||||||||||:!!||||||| nIleLysThrPheIleLysThrLeuLeuPheTyrIleAlaIleThrMetGluAlaP 1394876 : tataaaaacatttataaaaacattACTCTTTTACATCGCTATCACTATGGAAGCAT : 1394932 305 : heIlePheCysPheAlaGlyGluTyrLeuSerAsnLys >>>> Target Intr : 317 ||||||||! !||||||||||||||||||||||||||| 353 bp heIlePheSerPheAlaGlyGluTyrLeuSerAsnLys++ 1394933 : TCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAAgt................ : 1394973 318 : on 2 >>>> SerLysSerValAlaAsnAlaAlaTyrGluValPheTrpTyrAsn : 331 ||| !|||:!!::!||||||||||||... ! !|||||| ! ++SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeu 1394974 : .........agAGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTT : 1395366 332 : ValLysProSerGluSerArgMetLeuLeuIleLeuIleLeuArgSerGlnLysAr : 350 :!! ! |||..!!!:!!!!.!!!::!!:!!:!!|||!!::!!|||||||||!:!|| LeuAspProGlnAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgAr 1395367 : CTGGATCCTCAAGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACG : 1395423 351 : gLeuThrLeuThrIleGlyLysPheAsnAspLeuSerLeuGlnValPheAlaSer : 368 |||||||:!!||| !|||||||||! ||||||||||||:!!! !||||||!:! gLeuThrIleThrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsn 1395424 : ATTAACAATCACCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAAT : 1395479 vulgar: CbirOr119PC 201 368 . KQ414716.1 1394161 1395479 + 408 M 77 231 5 0 2 I 0 460 3 0 2 M 38 114 5 0 2 I 0 349 3 0 2 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394162 1395479 408 + . gene_id 2 ; sequence CbirOr119PC ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394162 1394392 . + . KQ414716.1 exonerate:protein2genome:local exon 1394162 1394392 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394393 1394394 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394393 1394856 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394855 1394856 . + . intron_id 0 ; splice_site "aG" KQ414716.1 exonerate:protein2genome:local cds 1394857 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394857 1394970 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394971 1394972 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394971 1395323 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1395322 1395323 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1395324 1395479 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395479 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394162 1395479 408 + . alignment_id 2 ; Query CbirOr119PC ; Align 1394162 202 231 ; Align 1394857 279 114 ; Align 1395324 317 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr119PC Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 255 Query range: 0 -> 182 Target range: 1385619 -> 1386654 1 : MetGluPheAlaThrThrIleSerProGlnIleLysPheGlyLeuGlnAlaIleGl : 19 ||| ! .!!|||! !|||!:!! !! !:!::!!!:!.!!|||!:: !.!!|| MetThrSerThrThrIleIleAsnArgProLeuGluTyrSerLeuArgLeuPheGl 1385620 : ATGACTTCGACGACTATAATTAATCGTCCATTGGAATATAGCCTCCGTCTATTTGG : 1385674 20 : yIleTrpProGlySerSerTyrSerLeuLeuTyrArgAlaPheTrpThrIleThrL : 38 | !||||||! !||||||||||||!!!||| ! !!! !.!!|||:!!! ! !: yAlaTrpProAspSerSerTyrSerPheLeuLysSerIleIleTrpSerThrIleM 1385675 : CGCCTGGCCAGATTCTTCCTATTCATTTCTGAAAAGTATTATTTGGTCGACGATAA : 1385731 39 : euGlyValThrGlnThrPheGlnPheLysTyrIleIleSerCysIleLysAsnAsn : 56 !!!.!... ||||||::! !||| !|||!!! !|||!:! ::: etAlaThrPheLeuMetPheGlnTyrTrpTyrCysIleThrHisIleArg---Ser 1385732 : TGGCAAcgtttttaatgtttcaataTTGGTATTGTATTACTCATATTAGA---TCA : 1385782 57 : AsnPheProAspLeuValAspSerValSerThrThrLeuProTyrSerLeuLeuCy : 75 ...... ||||||:::|||.!!:!!|||! !|||||| !! !!||||||:!!! GlyLeuIleAspLeuLeuAspGlyLeuSerIleThrLeuSerAsnSerLeuValPh 1385783 : ggtttaattgatttattgGACGGATTGAGTATTACTTTATCAAATTCACTCGTCTT : 1385839 76 : sLeuLysLeuIleIleLeuTrpLeuAsnGln{Ar} >>>> Target Intron : 86 !|||||||||||||||:!!||||||:!!...{||} 486 bp eLeuLysLeuIleIleIleTrpLeuHisSer{Ar}++ 1385840 : TCTCAAATTGATTATTATTTGGCTTCATAGT{CG}gt................... : 1385876 87 : 1 >>>> {g}LeuPheAsnAspIleLeuThrSerIleSerArgAspTrpHisAsn : 101 {|} !||| !!! !|||||||||!!!:!!! !..!|||!! :!!||| ++{g}ThrPheTyrGlyIleLeuThrThrValPheGluAspCysAsnAsn 1385877 : ......ag{A}ACATTTTATGGCATTCTGACAACCGTATTCGAGGACTGCAATAAT : 1386403 102 : CysAspSerValSerPheAsnMetHisThrMetThrAsnLysAlaAsnLeuSerAr : 120 ! !! !|||... ||| ... ||||||:!!||||||! |||||| TyrAlaSerThrValGluAsnLysArgIleMetThrAspLysAlaMetLeuSerSe 1386404 : TATGCTTCTAccgttgaaaataaacgaataatgACAGATAAAGCTATGTTGTCTTC : 1386460 121 : gArgTyrSerMetLeuIleIleGlyValTyrTrpMetAlaValValValTyrValS : 139 !||| ||| ...:::|||||| !!:!! !!!:.!! !!:!!|||||| !. rArgIleSerAsnPheLeuIleGlyTyrPheSerIleThrPheLeuValTyrSerG 1386461 : TCGtatctcaaattttttaattggctATTTTTCGATCACGTTCCTTGTATATTCAG : 1386517 140 : erVal<->IleMetGluPheAsnTyrThrAsnGluSerAsnLysAlaGluAspHis : 156 !!:!! :!!:!: !|||:!! ! !.!..!..!! :!!:::...... lyLeuAlaLeuValLeuPheAspGluAspGlnAsnGlyProValSerLysGlnArg 1386518 : GACTTGCTCTAGTATTATTTGATGAAGATCAGAATGGACCGGTTTCCAaacaaagg : 1386571 157 : LeuPheLeu<->LysMetGluPheProPheThrTyrAspValSerProIleArgGl : 174 |||||| :::||||||||||||||| ! ! ||||||||| || LysPheLeuIleArgMetGluPheProPheGluAlaThrValSerProArgTyrGl 1386572 : aaatttttaattagaatggAATTTCCTTTCGAAGCTACAGTCTCTCCACgttatga : 1386628 175 : uIleValMetValSerGlnPheVal : 182 ||||::::::||| ||||||::: uIleIleLeuValValGlnPheIle 1386629 : aattattctagttgtacaatttata : 1386654 vulgar: CbirOr119PC 0 182 . KQ414716.1 1385619 1386654 + 255 M 54 162 G 1 0 M 30 90 S 0 2 5 0 2 I 0 482 3 0 2 S 1 1 M 54 162 G 0 3 M 19 57 G 0 3 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1385620 1386654 255 + . gene_id 3 ; sequence CbirOr119PC ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1385620 1385873 . + . KQ414716.1 exonerate:protein2genome:local exon 1385620 1385873 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local splice5 1385874 1385875 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1385874 1386359 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1386358 1386359 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1386360 1386654 . + . KQ414716.1 exonerate:protein2genome:local exon 1386360 1386654 . + . insertions 6 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1385620 1386654 255 + . alignment_id 3 ; Query CbirOr119PC ; Align 1385620 1 162 ; Align 1385782 56 90 ; Align 1386361 87 162 ; Align 1386526 141 57 ; Align 1386586 160 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr119PC Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 233 Query range: 274 -> 367 Target range: 1408509 -> 1409202 275 : ValIleValThrSerIleGluGlyAsnGlnAsnTyrAlaMetLeuLeuLysSerLe : 293 :!!! :!! !:!!:!!:!!..!|||.!....!:! !||||||:!!|||! !:! LeuThrLeuGlnAlaLeuGlnAsnAsnAsnGlyPheLysMetLeuIleLysPheVa 1408510 : TTAACGTTACAGGCACTACAAAATAATAATGGATTTAAAATGTTGATCAAATTTGT : 1408564 294 : uPhePheTyrIleAlaIleThrLeuGluAlaPheIlePheCysPheAlaGlyGluT : 312 ! ! !:!|||!!:|||:!: !! !||||||||||||!:!|||||||||||||||| lValTyrTyrMetAlaValCysSerGluAlaPheIleTyrCysPheAlaGlyGluT 1408565 : TGTATATTACATGGCTGTGTGCTCAGAAGCGTTCATATACTGCTTTGCTGGAGAGT : 1408621 313 : yrLeuSerAsnLys >>>> Target Intron 1 >>>> SerLysSerValA : 321 |||||!:!! !||| 414 bp |||||| :::. yrLeuAsnIleLys++ ++SerLysLeuIleG 1408622 : ACCTTAATATCAAGgt.........................agagtaaactgattg : 1409062 322 : laAsnAlaAlaTyrGluValPheTrpTyrAsnValLysProSerGluSerArgMet : 339 ..:!!.!!||||||||| !!.!!|||||||||:!! ! !!!.!|||||||||:!: lyAspThrAlaTyrGluPheLeuTrpTyrAsnMetHisSerLysGluSerArgLeu 1409063 : gagACACGGCGTATGAATTTCTTTGGTATAATATGCATTCGAAGGAAAGCCGACTT : 1409116 340 : LeuLeuIleLeuIleLeuArgSerGlnLysArgLeuThrLeuThrIleGlyLysPh : 358 :!!|||:!!:!!|||||||||||||||||| !!!!!|||...|||...|||||||| MetLeuLeuValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysPh 1409117 : ATGTTGCTTGTAATACTACGATCACAGAAAGGATTTACtttcacttttggaaaatt : 1409173 359 : eAsnAspLeuSerLeuGlnValPheAla : 367 | ...||||||:!!:!! !|||||| eAlaSerLeuSerMetGluSerPheAla 1409174 : tgcaagtCTTTCCATGGAAAGTTTTGCA : 1409202 vulgar: CbirOr119PC 274 367 . KQ414716.1 1408509 1409202 + 233 M 42 126 5 0 2 I 0 410 3 0 2 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408510 1409202 233 + . gene_id 4 ; sequence CbirOr119PC ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408510 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408510 1408635 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408636 1408637 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408636 1409049 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1409048 1409049 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409050 1409202 . + . KQ414716.1 exonerate:protein2genome:local exon 1409050 1409202 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408510 1409202 233 + . alignment_id 4 ; Query CbirOr119PC ; Align 1408510 275 126 ; Align 1409050 317 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr119PC Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 316 -> 368 Target range: 1387619 -> 1387775 317 : SerLysSerValAlaAsnAlaAlaTyrGluValPheTrpTyrAsnValLysProSe : 335 |||:!! !!:!!.!!.!.:!:...|||... ...||||||:!!:!!|||||| ! SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 336 : rGluSerArgMetLeuLeuIleLeuIleLeuArgSerGlnLysArgLeuThrLeuT : 354 !|||:!!|||::::::|||::::::||||||||||||||||||..!|||! !|||| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 355 : hrIleGlyLysPheAsnAspLeuSerLeuGlnValPheAlaSer : 368 || ||||||||| :!!||||||||| !.!||||||!:: hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAt : 1387775 vulgar: CbirOr119PC 316 368 . KQ414716.1 1387619 1387775 + 141 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387775 141 + . gene_id 5 ; sequence CbirOr119PC ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387775 141 + . alignment_id 5 ; Query CbirOr119PC ; Align 1387620 317 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr119PC Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 316 -> 368 Target range: 1402435 -> 1402591 317 : SerLysSerValAlaAsnAlaAlaTyrGluValPheTrpTyrAsnValLysProSe : 335 |||:!! !:!!!.!|||.!!||||||||| !!.!!||||||:!!:!!::: !!!! SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerTh 1402436 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAAC : 1402490 336 : rGluSerArgMetLeuLeuIleLeuIleLeuArgSerGlnLysArgLeuThrLeuT : 354 !||||||!:!:!:|||:!! !:!!|||||||||||||||||| !!!!!|||!..| rGluSerGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheT 1402491 : TGAAAGCCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACGTtta : 1402547 355 : hrIleGlyLysPheAsnAspLeuSerLeuGlnValPheAlaSer : 368 ||...|||||||||:::...|||||||||:!! !|||.!!:!! hrPheGlyLysPheSerSerLeuSerLeuGluSerPheThrAla 1402548 : cttttggaaaattttcaagtctCTCCTTGGAAAGCTTTACGGCC : 1402591 vulgar: CbirOr119PC 316 368 . KQ414716.1 1402435 1402591 + 137 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1402436 1402591 137 + . gene_id 6 ; sequence CbirOr119PC ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1402436 1402591 . + . KQ414716.1 exonerate:protein2genome:local exon 1402436 1402591 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1402436 1402591 137 + . alignment_id 6 ; Query CbirOr119PC ; Align 1402436 317 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr119PC Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 236 -> 277 Target range: 1401108 -> 1401231 237 : IleArgArgHisGlnAspValIleAlaLeuSerAspAsnIleGluAsnLeuPheSe : 255 |||..!|||||||||!!::!!|||!.!!!!:!!!!:!..||||||!!.||||||!! IleAsnArgHisGlnGluIleIleValPheAlaGluArgIleGluLysLeuPheTh 1401109 : attaACAGACATCAGGAAATTATTGTTTTTGCAGAAAGAATTGAGAAACTTTTTAC : 1401163 256 : rTyrIleAlaLeuMetGlnPhePheThrAsnThrLeuValIleCysCysIleAlaP : 274 !|||!!:||||||! |||.!! ! :!!||||||:!!:!!|||||||||:!!!.!| rTyrMetAlaLeuSerGlnLeuValSerAsnThrIleIleIleCysCysValGlyP 1401164 : ATACATGGCTCTCAGTCAACTTGTGTCCAATACGATAATTATATGTTGCGTAGGAT : 1401220 275 : heValIleVal : 277 ||:!!:!!||| heLeuValVal 1401221 : TTCTCGTTGTA : 1401231 vulgar: CbirOr119PC 236 277 . KQ414716.1 1401108 1401231 + 129 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401109 1401231 129 + . gene_id 7 ; sequence CbirOr119PC ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1401109 1401231 . + . KQ414716.1 exonerate:protein2genome:local exon 1401109 1401231 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401109 1401231 129 + . alignment_id 7 ; Query CbirOr119PC ; Align 1401109 237 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr119PC Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 275 -> 316 Target range: 1401308 -> 1401431 276 : IleValThrSerIleGluGlyAsnGlnAsnTyrAlaMetLeuLeuLysSerLeuPh : 294 |||::: :!!:!!.!. !:!!.!.... ! !!:!!|||||||||||||||.. IleLeuGlnAlaValHisIleAspAsnGlyValProLeuLeuLeuLysSerLeuLe 1401309 : atattacaggCAGTACATATCGACAATGGAGTTCCTCTGTTACTCAaatctctttt : 1401363 295 : ePheTyrIleAlaIleThrLeuGluAlaPheIlePheCysPheAlaGlyGluTyrL : 313 .||||||:::!.!||| !|||||||||||||||!:!||||||!.!|||||||||| uPheTyrValValIleCysLeuGluAlaPheIleTyrCysPheValGlyGluTyrL 1401364 : attttatgtgGTTATTTGTTTAGAAGCGTTTATATACTGCTTTGTCGGAGAATATC : 1401420 314 : euSerAsnLys : 316 |||||! !||| euSerIleLys 1401421 : TCAGTATCAAG : 1401431 vulgar: CbirOr119PC 275 316 . KQ414716.1 1401308 1401431 + 114 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401309 1401431 114 + . gene_id 8 ; sequence CbirOr119PC ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1401309 1401431 . + . KQ414716.1 exonerate:protein2genome:local exon 1401309 1401431 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401309 1401431 114 + . alignment_id 8 ; Query CbirOr119PC ; Align 1401309 276 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr89NTE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 327 -> 374 Target range: 1395341 -> 1395482 328 : AlaAlaTyrGluTyrGluTrpTyrLysLeuGluProLysLysAlaLysValLeuVa : 346 |||||||||...! |||||| |||!!:|||:!! ! ! ! :!!:!!:! AlaAlaTyrSerSerProTrpTyrLeuLeuAspProGlnAspArgHisIleIleIl 1395342 : GCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCAAGACAGACATATCATTAT : 1395396 347 : lLeuLeuMetIleArgThrSerLysProLeuTyrIleThrAlaGlyLysIlePheP : 365 !|||||||||||||||:!!..!!:!! !||| |||||||||||||||.!!.!. eLeuLeuMetIleArgSerGlnArgArgLeuThrIleThrAlaGlyLysPheMetA 1395397 : TCTTCTCATGATAAGATCTCAAAGACGATTAACAATCACCGCTGGAAAATTTATGG : 1395453 366 : roMetThrMetSerThrPheCysAsnIle : 374 !:!!:!!:!:..! !|||...|||:!! spLeuSerLeuGluGlyPheAlaAsnVal 1395454 : ACTTGTCTTTAGAAGGTTTTGCAAATGTA : 1395482 vulgar: CbirOr89NTE 327 374 . KQ414716.1 1395341 1395482 + 113 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395342 1395482 113 + . gene_id 1 ; sequence CbirOr89NTE ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395342 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395342 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395342 1395482 113 + . alignment_id 1 ; Query CbirOr89NTE ; Align 1395342 328 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr102PNI Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 274 -> 332 Target range: 1387604 -> 1387778 275 : PheLeuPheGlyThrCysGluAlaIleTyrAspAlaAlaTyrGluTyrAsnTrpTy : 293 |||:::||| ||| !||| .!.:!:...|||...::: ||||| PheValPhePhe***SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTy 1387605 : tttgtttttttttagagtgAACGTATTACACAATCtgtgtacaattttctttggTA : 1387659 294 : rThrLeuGluProLysGluThrLysAsnLeuLeuMetIleMetIleArgAlaAsnL : 312 | !|||:!!|||::!|||.!!::: :::|||:::|||::::::|||:!!.!.| rAspLeuLysProArgGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnL 1387660 : CGATCTAAAACCTCGAGAAGCTCgtattgtattattaataatattacgaTCTCAGA : 1387716 313 : ysProLeuTyrLeuThrAlaGlyLysLeuPheProMetThrMetAlaThrPheCys : 330 || !||| |||||||||||||||!!! ! !:!::!!:!!|||.!!|||..! ysGluLeuIleLeuThrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAla 1387717 : AAGAGTTAATACTCACTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCT : 1387770 331 : AsnLeu : 332 |||::: AsnVal 1387771 : AAtgta : 1387778 vulgar: CbirOr102PNI 274 332 . KQ414716.1 1387604 1387778 + 124 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387605 1387778 124 + . gene_id 1 ; sequence CbirOr102PNI ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387605 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387605 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387605 1387778 124 + . alignment_id 1 ; Query CbirOr102PNI ; Align 1387605 275 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr91NTE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 314 -> 372 Target range: 1387604 -> 1387778 315 : PheLeuIleAlaGlnCysGluGlyValTyrGlnAlaAlaCysGluTyrHisTrpTy : 333 |||:::... ||| !!:!! |||:!:... ...::: ||||| PheValPhePhe***SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTy 1387605 : tttgtttttttttagagtgAACGTATTACACAATCtgtgtacaattttctttggTA : 1387659 334 : rAspLeuGluProLysGlnAlaArgAsnLeuIleLeuLeuMetMetArgAlaAsnL : 352 |||||||:!!|||::!:!!|||||| ::::::|||:::::::::|||:!!.!.| rAspLeuLysProArgGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnL 1387660 : CGATCTAAAACCTCGAGAAGCTCgtattgtattattaataatattacgaTCTCAGA : 1387716 353 : ysProLeuTyrValThrValGlyLysIlePheProLeuThrMetAsnAlaPheCys : 370 || !||| :!!|||!.!||||||.!! ! !|||:!!:!! !||||||..! ysGluLeuIleLeuThrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAla 1387717 : AAGAGTTAATACTCACTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCT : 1387770 371 : SerLeu : 372 !::::: AsnVal 1387771 : AAtgta : 1387778 vulgar: CbirOr91NTE 314 372 . KQ414716.1 1387604 1387778 + 110 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387605 1387778 110 + . gene_id 1 ; sequence CbirOr91NTE ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387605 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387605 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387605 1387778 110 + . alignment_id 1 ; Query CbirOr91NTE ; Align 1387605 315 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr104NTE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 321 -> 373 Target range: 1387622 -> 1387778 322 : GluAlaValTyrGluAlaAlaTyrGluTyrAsnTrpTyrThrLeuGluSerLysLy : 340 ||| !:!! :!!:!:...|||...::: |||||| !|||:!! !!::!:! GluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProArgGl 1387623 : gAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCGAGA : 1387677 341 : sAlaArgAsnLeuLeuMetIleMetIleArgAlaAsnLysProLeuTyrLeuThrA : 359 !|||||| :::|||:::|||::::::|||:!!.!.||| !||| ||||||| uAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuThrA 1387678 : AGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCACTG : 1387734 360 : laGlyLysLeuPheProMetThrMetAlaMetPheCysAsnLeu : 373 ||||||||!!! ! !:!::!!:!!||| |||..!|||::: laGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387735 : CGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: CbirOr104NTE 321 373 . KQ414716.1 1387622 1387778 + 114 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387623 1387778 114 + . gene_id 1 ; sequence CbirOr104NTE ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387623 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387623 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387623 1387778 114 + . alignment_id 1 ; Query CbirOr104NTE ; Align 1387623 322 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr118PSE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 171 -> 202 Target range: 1387453 -> 1387546 172 : MetLeuValLysLeuValProTyrTyrPhePheValAsnValGluMetPheIlePr : 190 :!::!!:!!|||! ! !!||||||||| !! !|||||| !||| |||||| LeuIleLeuLysCysPheProTyrTyrValAlaValAsnCysGluAlaPheIleLe 1387454 : TTAATACTGAAATGTTTTCCCTATTACGTTGCTGTTAATTGTGAAGCATTCATTTT : 1387508 191 : oCysPheThrGlyGluTyrLeuSerSerLysValArg : 202 !|||!:!|||||||||||||||!!!|||||||||||| uCysTyrThrGlyGluTyrLeuThrSerLysValArg 1387509 : ATGTTATACCGGAGAATATCTAACCTCTAAGgtaaga : 1387546 vulgar: CbirOr118PSE 171 202 . KQ414716.1 1387453 1387546 + 104 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387454 1387546 104 + . gene_id 1 ; sequence CbirOr118PSE ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387454 1387546 . + . KQ414716.1 exonerate:protein2genome:local exon 1387454 1387546 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387454 1387546 104 + . alignment_id 1 ; Query CbirOr118PSE ; Align 1387454 172 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr89NTE Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 319 -> 383 Target range: 892508 -> 892700 320 : ThrGlnCysGluAlaMetTyrTyrAlaAlaTyrGluTyrGluTrpTyrLysLeuGluP : 339 ||| ! !!!:|||:::||| !||| !||||||! !||| ThrLeuIleAspAlaValTyrLeuPheArgCysGluValMetTrpTyrThrLeuProL 892509 : ACGTTAATCGATGctgtatatttatttagatGTGAGGTAATGTGGTACACACTTCCTA : 892566 340 : roLysLysAlaLysValLeuValLeuLeuMetIleArgThrSerLysProLeuTyrIl : 358 !||| !...::: ...|||::! !|||!:!||||||||| ! ! || ysLysCysHisSerLeuTyrLysPheLeuLeuAlaArgSerSerLysProSerLysIl 892567 : AGAAGTGTCACagtttatataaatttttgctGGCAAGAAGTTCGAAACCTAGTAAAAT : 892623 359 : eThrAlaGlyLysIlePheProMetThrMetSerThrPheCysAsnIleIleLysThr : 377 ||||||| !|||:!! ||||||||||||..!|||||| ! ::: ... eThrAlaTyrLysLeuAlaProMetThrMetGluThrPheLeuAlaValLysAsnPhe 892624 : AACAGCTTATAAACTAGCACCCATGACGATGGAGACGTTTCTCgcggtaaaaaatttt : 892680 378 : SerAlaGlyTyrValSer : 383 ::: |||:::||| LeuSerArgTyrMetSer 892681 : ttatcgcgatatatgtca : 892700 vulgar: CbirOr89NTE 319 383 . KQ414735.1 892508 892700 + 104 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 892509 892700 104 + . gene_id 1 ; sequence CbirOr89NTE ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 892509 892700 . + . KQ414735.1 exonerate:protein2genome:local exon 892509 892700 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 892509 892700 104 + . alignment_id 1 ; Query CbirOr89NTE ; Align 892509 320 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr104NTE Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 323 -> 370 Target range: 1345573 -> 1345714 324 : ValTyrGluAlaAlaTyrGluTyrAsnTrpTyrThrLeuGluSerLysLysAlaAr : 342 :!! ! :!!|||..!||| !||||||||| !||| !..!||| ! .!!|| MetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLysTyrThrAr 1345574 : ATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAAATACACGCG : 1345628 343 : gAsnLeuLeuMetIleMetIleArgAlaAsnLysProLeuTyrLeuThrAlaGlyL : 361 |:::|||:!!.!. !!!: !|||:!!.!.||||||! !|||||||||||||||| gSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuThrAlaGlyL 1345629 : ATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAGCTGGCA : 1345685 362 : ysLeuPheProMetThrMetAlaMetPhe : 370 ||!!!!:! !.!.:!!:!:! !! ||| ysPheTyrValPheSerLeuGluThrPhe 1345686 : AGTTCTACGTGTTCTCGTTAGAAACATTC : 1345714 vulgar: CbirOr104NTE 323 370 . KQ414782.1 1345573 1345714 + 103 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345574 1345714 103 + . gene_id 1 ; sequence CbirOr104NTE ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345574 1345714 . + . KQ414782.1 exonerate:protein2genome:local exon 1345574 1345714 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345574 1345714 103 + . alignment_id 1 ; Query CbirOr104NTE ; Align 1345574 324 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr102PNI Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 282 -> 329 Target range: 1345573 -> 1345714 283 : IleTyrAspAlaAlaTyrGluTyrAsnTrpTyrThrLeuGluProLysGluThrLy : 301 !!: ! .!.|||..!||| !||||||||| !||| ! !||| ! |||:: MetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLysTyrThrAr 1345574 : ATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAAATACACGCG : 1345628 302 : sAsnLeuLeuMetIleMetIleArgAlaAsnLysProLeuTyrLeuThrAlaGlyL : 320 !:::|||:!!.!. !!!: !|||:!!.!.||||||! !|||||||||||||||| gSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuThrAlaGlyL 1345629 : ATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAGCTGGCA : 1345685 321 : ysLeuPheProMetThrMetAlaThrPhe : 329 ||!!!!:! !.!.:!!:!:! !|||||| ysPheTyrValPheSerLeuGluThrPhe 1345686 : AGTTCTACGTGTTCTCGTTAGAAACATTC : 1345714 vulgar: CbirOr102PNI 282 329 . KQ414782.1 1345573 1345714 + 108 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345574 1345714 108 + . gene_id 1 ; sequence CbirOr102PNI ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345574 1345714 . + . KQ414782.1 exonerate:protein2genome:local exon 1345574 1345714 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345574 1345714 108 + . alignment_id 1 ; Query CbirOr102PNI ; Align 1345574 283 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr108NI Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 131 -> 225 Target range: 44784 -> 45063 132 : ThrIleIleSerSerPheIleLeuLeuValPheLeuProCysPheGlyValSerIleArg : 151 ||||||||||||||| :!:|||! ! !.!!:!! ! ! ! !:!!! !:!!||| ThrIleIleSerSerThrValLeuCysHisIleValValIleThrTyrIlePheLeuArg 44785 : ACTATAATAAGCAGCACAGTGTTATGTCACATTGTGGTCATCACTTATATATTTCTACGA : 44842 152 : TyrLeuLysAsnMetThrAsnSerAlaArgLeuMetProMetGlnSerTyrTyrLeuTyr : 171 !:!|||! !..! ! !!:!.!!.!!||||||:!: .!.!:::!!|||!:!! !||| PheLeuThrArgLysTyrSerGlyThrArgLeuLeu---PheArgAlaTyrPheProTyr 44843 : TTCCTCACCAGGAAGTACAGCGGCACCAGACTACTC---TTCCGTGCTTATTTCCCTTAC : 44899 172 : AspSerAspGlnSerProLeuTyrGluIleSerPheValLeuGlnAlaAlaCysValVal : 191 ||||||||| |||||| !||||||.!!!!! ! :!! !||| ! !..!!.! !! AspSerAspValSerProAsnTyrGluPheThrValIleAlaGlnIleIleAlaAlaPhe 44900 : GACAGCGATGTCAGTCCAAATTACGAATTTACAGTGATTGCTCAAATCATAGCTGCTTTT : 44959 192 : SerThrAlaAlaLeuPheSerGlyIleAspAsnPheTrpGlyLeuThrValSerHisIle : 211 ! !.!!|||.!! !!:!!!!!.!:!!|||!.!||| ! !:!! !:!! !|||:!! TyrAlaAlaThrThrTyrThrAlaValAspThrPheIleValMetLeuIleLeuHisVal 44960 : TATGCAGCCACCACATACACAGCCGTCGATACTTTCATTGTAATGTTAATTCTGCACGTT : 45019 212 : CysGlyGlnLeuGluAsnLeuGlnThrArgIleThrSerLeu : 225 ||||||||||||..!||||||::!!.!..!.!! !!.!||| CysGlyGlnLeuSerAsnLeuArgAsnGluPheGlyLysLeu 45020 : TGTGGACAACTTTCGAATTTGAGAAACGAATTCGGTAAGCTT : 45063 vulgar: CbirOr108NI 131 225 . KQ414804.1 44784 45063 + 138 M 32 96 G 1 0 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44785 45063 138 + . gene_id 1 ; sequence CbirOr108NI ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44785 45063 . + . KQ414804.1 exonerate:protein2genome:local exon 44785 45063 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 44785 45063 138 + . alignment_id 1 ; Query CbirOr108NI ; Align 44785 132 96 ; Align 44881 165 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr108NI Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 91 -> 225 Target range: 36560 -> 36953 92 : LeuIleLeuIleLeuArgMetIleLysGluAspTrpLeuGlnProLysThrThrLysGln : 111 |||:!!!!!:!!:!!!!!...||| !!:|||||| !:!!|||! !! ! !.!. LeuValPheLeuMetSerGlnIlePheAspAspTrpAlaGluProIleProGluValAsp 36561 : CTAGTATTCTTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTGGAT : 36618 112 : ArgHisIleMetValLysHisAlaArgSerAlaArgPheIleMetIlePheGlyTyrLeu : 131 ||||||! |||:!!||| !|||!:!! !::!|||.!.||| ||| !! ! ArgHisThrMetLeuLysThrAlaLysIleSerArgMetIleSerIle------ValCys 36619 : CGCCACACGATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATA------GTCTGT : 36672 132 : ThrIleIleSerSerPheIleLeuLeuValPheLeuProCysPheGlyValSerIleArg : 151 :!!|||:!:!!!! ! !!!!::!!|||!.!|||||| !! ! ! !|||! !! ! SerIleLeuThrTyrValMetValLeuAlaPheLeuSerLeuGlnIleTrpSerSerMet 36673 : TCTATCCTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGCAGCATG : 36732 152 : TyrLeuLysAsnMetThrAsnSerAlaArgLeuMetProMetGlnSerTyrTyrLeuTyr : 171 ! !! ::: ! !||| !!.! !!|||:!: !!:! !:!! !:!! !||| GlnAsnThrSerGluPheAsnValGlyGlyLeuLeu---IleProAlaThrPheProTyr 36733 : CAAAACACCTCGGAGTTCAACGTAGGAGGACTACTT---ATCCCGGCCACATTTCCATAC : 36789 172 : AspSerAspGlnSerProLeuTyrGluIleSerPheValLeuGlnAlaAlaCysValVal : 191 |||!!!:!!:!!|||||| !|||||||||!!!!:::!! !||| !!.! ! ..!||| AspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrVal 36790 : GACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTG : 36849 192 : SerThrAlaAlaLeuPheSerGlyIleAspAsnPheTrpGlyLeuThrValSerHisIle : 211 ! !!:!||| !! !!:!||| !!.!!|||!..||| !.!:!! !|||! !|||||| LeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHisIle 36850 : TTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATA : 36909 212 : CysGlyGlnLeuGluAsnLeuGlnThrArgIleThrSerLeu : 225 |||||||||||| !|||!::! ! !:!! !!:!||| CysGlyGlnLeuThrValLeuArgIleAlaLeuGluAsnLeu 36910 : TGCGGCCAATTAACTGTTCTCCGCATTGCCCTCGAGAATCTT : 36953 vulgar: CbirOr108NI 91 225 . KQ414804.1 36560 36953 + 132 M 36 108 G 2 0 M 34 102 G 1 0 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36561 36953 132 + . gene_id 2 ; sequence CbirOr108NI ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36561 36953 . + . KQ414804.1 exonerate:protein2genome:local exon 36561 36953 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 36561 36953 132 + . alignment_id 2 ; Query CbirOr108NI ; Align 36561 92 108 ; Align 36669 130 102 ; Align 36771 165 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr114 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 173 Query range: 115 -> 306 Target range: 36557 -> 37673 116 : AlaLeuSerProLeuIleAspMetIleAlaArgAspTrpMetArgAlaLysMetLysGlu : 135 |||||| ! !|||!!:..!...||| ! !|||||| !..! !!! !:!!! ! AlaLeuValPheLeuMetSerGlnIlePheAspAspTrpAlaGluProIleProGluVal 36558 : GCGCTAGTATTCTTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTG : 36615 136 : GluArgAspValMetLeuLysArgAlaLysThrThrArgIleLeuAlaIleCysGlyGly : 155 !!:||| !!..!|||||||||! !||||||! !!:!|||!!::!!:!!||| AspArgHisThrMetLeuLysThrAlaLysIleSerArgMetIleSerIle--------- 36616 : GATCGCCACACGATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATA--------- : 36669 156 : ValLeuIleLeuLeuThrLeuValPheGlyLeuGlyPheSerSerLeuGlyMetSerLeu : 175 |||! ! !:!!||||||! !|||.!.! !|||!.!|||! !|||||| !!!:!!! ! ValCysSerIleLeuThrTyrValMetValLeuAlaPheLeuSerLeuGlnIleTrpSer 36670 : GTCTGTTCTATCCTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGC : 36726 176 : ArgLeuValThrAsnLeuThrAspProGlyArgProLeuProIleGlnThrTyrTyrLeu : 195 !!!:!! !!.!!.!! ! ! ! !! ! !! !|||! !|||! !.!! !:!! ! SerMetGlnAsnThrSerGluPheAsnValGlyGlyLeuLeuIleProAlaThrPhePro 36727 : AGCATGCAAAACACCTCGGAGTTCAACGTAGGAGGACTACTTATCCCGGCCACATTTCCA : 36786 196 : HisAspValThrArgSerProGlnPheGluLeuThrPheLeuAlaGlnGlyIleAlaLeu : 215 :!!|||..!!.!!:!||||||.!.!:!|||:!!|||!::|||!.!||| !:!:!.! ! TyrAspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThr 36787 : TACGACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACA : 36846 216 : ThrIleSerGlyIleSerTyrThrGlyValAspAsnPheLeuGlyLeuLeuMetLeuHis : 235 ..!:!:|||!.!|||!!!|||:!! !! !!|||!..|||:!!!.!:!!|||:!!|||||| ValLeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHis 36847 : GTGTTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACAC : 36906 236 : IleCysGlyGlnMetGluAsnLeuHisLeuArgValArgAsnLeuArgArgAspProAsp : 255 ||||||||||||:!: !|||!.!:!! !:!!..!|||||| !!.! !! IleCysGlyGlnLeuThrValLeuArgIleAlaLeuGluAsnLeuAlaAsnThrThrIle 36907 : ATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTCGAGAATCTTGCTAACACGACAATA : 36966 256 : PheLysAlaThrLeuLysTyrAsnValArgAspHisIleArgLeuIle{Ar} >>>> T : 272 ! ! ! !|||!:!.!.! !||| !! !:!! !{||} LysAspAsnTyrSerLysPheGlnGluArgLeuGlyTyrIleValHis{Ar}+- 36967 : AAAGACAACTACAGCAAGTTCCAAGAACGATTAGGATACATTGTGCAC{AG}gc...... : 37021 273 : arget Intron 1 >>>> {g}SerIleGluIleIleAspAspThrPheAsnLeuMet : 284 552 bp {|} ! !! !|||:!:!!:||| !||||||:!!||| ++{g}TyrAlaValIleValGluAspCysPheAsnIleMet 37022 : ...................ag{g}taCGCTGTGATAGTGGAAGATTGCTTCAACATCATG : 37605 285 : LeuLeuGlyLeuThrPheLeuPheGlyIleLeuPheCysLeuHisGlyPheLeuIleIle : 304 ||||||! !! !|||!!.:!!! ! ! !:!!.!!|||:!! !|||!:!! !!!:!!: LeuLeuValGlnThrLeuMetCysThrAlaMetLeuCysMetThrGlyTyrArgMetMet 37606 : CTGCTCGTTCAAACTTTAATGTGCACCGCCATGCTCTGTATGACTGGATATCGCATGATG : 37665 305 : AsnVal : 306 !.!||| ThrVal 37666 : ACCGTG : 37673 vulgar: CbirOr114 115 306 . KQ414804.1 36557 37673 + 173 M 37 111 G 3 0 M 116 348 S 0 2 5 0 2 I 0 548 3 0 2 S 1 1 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36558 37673 173 + . gene_id 1 ; sequence CbirOr114 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 36558 37018 . + . KQ414804.1 exonerate:protein2genome:local exon 36558 37018 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local splice5 37019 37020 . + . intron_id 1 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 37019 37570 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 37569 37570 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 37571 37673 . + . KQ414804.1 exonerate:protein2genome:local exon 37571 37673 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36558 37673 173 + . alignment_id 1 ; Query CbirOr114 ; Align 36558 116 111 ; Align 36669 156 348 ; Align 37572 273 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr114 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 115 -> 253 Target range: 31119 -> 31530 116 : AlaLeuSerProLeuIleAspMetIleAlaArgAspTrpMetArgAlaLysMetLysGlu : 135 |||.!!!.!|||:!!||| ! .!! ! !||||||! ! !:!!!:!! |||||| AlaPheLysProValIleLysSerPheTyrAspAspTrpLysThrSerArgThrLysGlu 31120 : gcttTCAAGCCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACcaaggag : 31177 136 : GluArgAspValMetLeuLysArgAlaLysThrThrArgIleLeuAlaIleCysGlyGly : 155 |||::::::..!|||||||||||||||||| !.!!!:! !:!!:!!|||!! !!..! GluLysGluThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIleTrpCysSer 31178 : gagaaggagacCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGGTGCTCA : 31237 156 : ValLeuIleLeuLeuThrLeuValPheGlyLeuGlyPheSerSerLeuGlyMetSerLeu : 175 ||||||! !||| !! !:!!..! !! !|||.!!.!! !!:!! !!!!:! !! ! ValLeuThrLeuThrMetValThrValTyrLeuSerLeuArgAla---TrpIleIleTyr 31238 : GTATTAACCTTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCG---TGGATCATCTAC : 31294 176 : ArgLeuValThrAsnLeuThrAspProGlyArgProLeuProIleGlnThrTyrTyrLeu : 195 !:!|||! !! ! ! ! ! ! !! !|||! !|||! ! !! !|||!:!! ! GlnLeuAspArgAlaAsnGlnLysGlnAspArgLeuLeuLeuTyrProGlyTyrPhePro 31295 : CAGCTTGATAGGGCAAACCAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTATTTTCCC : 31354 196 : HisAspValThrArgSerProGlnPheGluLeuThrPheLeuAlaGlnGlyIleAlaLeu : 215 !|||:!! !! !! ! ! !.!. !! !||| !!!!!.!|||! !:!!||| ! PheAspIleArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeuAlaAla 31355 : TTCGATATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCAGCG : 31414 216 : ThrIleSerGlyIleSerTyrThrGlyValAspAsnPheLeuGlyLeuLeuMetLeuHis : 235 ! !:!!! !|||||||||||| !||||||!..|||:!!!.!:!!|||!!::!!||| TyrSerAlaValIleSerTyrThrThrValAspThrPheIleAlaMetLeuIleMetHis 31415 : TATTCCGCTGTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATAATGCAC : 31474 236 : IleCysGlyGlnMetGluAsnLeuHisLeuArgValArgAsnLeuArgArgAsp : 253 ||||||||||||.!.|||! |||...! !!:!:!!|||!..|||! ! !||| IleCysGlyGlnPheGluIleLeuArgGlnLysLeuArgArgLeuMetAspAsp 31475 : ATATGCGGACAATTTGAGATACTGAGACAGAAATTACGAAGGCTGATGGATGAC : 31530 vulgar: CbirOr114 115 253 . KQ414804.1 31119 31530 + 152 M 55 165 G 1 0 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31120 31530 152 + . gene_id 2 ; sequence CbirOr114 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31120 31530 . + . KQ414804.1 exonerate:protein2genome:local exon 31120 31530 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 31120 31530 152 + . alignment_id 2 ; Query CbirOr114 ; Align 31120 116 165 ; Align 31285 172 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr114 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 184 -> 243 Target range: 44865 -> 45042 185 : GlyArgProLeuProIleGlnThrTyrTyrLeuHisAspValThrArgSerProGlnPhe : 204 |||! ! !|||! !.!!!::.!!|||!:!! !:!!||| ! ! !||||||.!.!:! GlyThrArgLeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyr 44866 : GGCACCAGACTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTAC : 44923 205 : GluLeuThrPheLeuAlaGlnGlyIleAlaLeuThrIleSerGlyIleSerTyrThrGly : 224 |||!!!||| ! :!!|||||| !|||||| ! ! !:!!!.!! !!!!||||||!.! GluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAla 44924 : GAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCC : 44983 225 : ValAspAsnPheLeuGlyLeuLeuMetLeuHisIleCysGlyGlnMetGluAsnLeu : 243 ||||||!.!|||:!!! !:!!|||!!:||||||:!!|||||||||:!:..!|||||| ValAspThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeu 44984 : GTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTG : 45042 vulgar: CbirOr114 184 243 . KQ414804.1 44865 45042 + 130 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44866 45042 130 + . gene_id 3 ; sequence CbirOr114 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44866 45042 . + . KQ414804.1 exonerate:protein2genome:local exon 44866 45042 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44866 45042 130 + . alignment_id 3 ; Query CbirOr114 ; Align 44866 185 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr103NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 93 -> 218 Target range: 36569 -> 36935 94 : ValLeuLysMetValLysGluAspTrpLeuLysPheLysThrGluAspGluArgAsnIle : 113 :!!:!!!.....:!! !!:|||||| !:!! ! !!|||! !!:|||:!!! LeuMetSerGlnIlePheAspAspTrpAlaGluProIleProGluValAspArgHisThr 36570 : TTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACG : 36627 114 : MetIleArgArgAlaArgIleAlaArgIleIleThrIleCysGlyTyrValValMetPhe : 133 |||:!:!:!! !|||!:!|||::!|||!!:|||:!!||| ! !!! !:!!:!!! !!:! MetLeuLysThrAlaLysIleSerArgMetIleSerIleValCysSerIleLeuThrTyr 36628 : ATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTCTGTTCTATCCTGACGTAT : 36687 134 : GlySerPheIlePheAlaValValLeuProPhePheGlyIleSerLeuArgHisMetThr : 153 ! !! ! !!:!: ! !:!! !|||! !.!!!::.!! |||:!!!:!:!!! :!! ValMetValLeuAlaPheLeuSerLeuGlnIleTrpSer---SerMetGlnAsnThrSer 36688 : GTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGC---AGCATGCAAAACACCTCG : 36744 154 : AsnIleThrAspProGlyLysLeuMetProLeuGlnSerTyrTyrIleTyrAspIleAsn : 173 .!..!!!.!! !||| !|||!!:||| :!! !:! !||||||! ||| GluPheAsnValGlyGlyLeuLeuIlePro------AlaThrPheProTyrAspThrAsn 36745 : GAGTTCAACGTAGGAGGACTACTTATCCCG------GCCACATTTCCATACGACACGAAT : 36798 174 : AsnSerProIleTyrGluIleThrTyrPheIleGlnGlyIleSerLeuMetLeuAlaAla : 193 !!.||||||! !||||||||||||!::.!! !||| !:!:.!! !:!!|||::!||| LysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrValLeuSerAla 36799 : AAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCG : 36858 194 : ThrValTyrSerSerThrAspAsnPheLeuGlyLeuLeuValLeuHisValCysGlyGln : 213 ! ! !||||||!!! !|||!..|||:!!!.!:!!||||||||||||:!!||||||||| IleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHisIleCysGlyGln 36859 : ATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAA : 36918 214 : LeuGluAsnLeuArg : 218 ||| !|||||| LeuThrValLeuArg 36919 : TTAACTGTTCTCCGC : 36935 vulgar: CbirOr103NTE 93 218 . KQ414804.1 36569 36935 + 158 M 53 159 G 1 0 M 16 48 G 2 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36570 36935 158 + . gene_id 1 ; sequence CbirOr103NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36570 36935 . + . KQ414804.1 exonerate:protein2genome:local exon 36570 36935 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 36570 36935 158 + . alignment_id 1 ; Query CbirOr103NTE ; Align 36570 94 159 ; Align 36729 148 48 ; Align 36777 166 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr103NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 158 -> 221 Target range: 44865 -> 45054 159 : GlyLysLeuMetProLeuGlnSerTyrTyrIleTyrAspIleAsnAsnSerProIleTyr : 178 |||! !:!:! !!!!!:::!!|||!:! !||||||! !:!! !||||||! !||| GlyThrArgLeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyr 44866 : GGCACCAGACTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTAC : 44923 179 : GluIleThrTyrPheIleGlnGlyIleSerLeuMetLeuAlaAlaThrValTyrSerSer : 198 |||.!!||| .!! !||| !|||:!! !.!.! !|||||||||..!|||!!!:!! GluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAla 44924 : GAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCC : 44983 199 : ThrAspAsnPheLeuGlyLeuLeuValLeuHisValCysGlyGlnLeuGluAsnLeuArg : 218 ..!|||!.!|||:!!! !:!!|||:!!|||||||||||||||||||||..!||||||||| ValAspThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArg 44984 : GTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGA : 45043 219 : LysArgPhe : 221 !!...!||| AsnGluPhe 45044 : AACGAATTC : 45054 vulgar: CbirOr103NTE 158 221 . KQ414804.1 44865 45054 + 150 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44866 45054 150 + . gene_id 2 ; sequence CbirOr103NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44866 45054 . + . KQ414804.1 exonerate:protein2genome:local exon 44866 45054 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44866 45054 150 + . alignment_id 2 ; Query CbirOr103NTE ; Align 44866 159 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr103NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 92 -> 230 Target range: 31128 -> 31539 93 : ProValLeuLysMetValLysGluAspTrpLeuLysPheLysThrGluAspGluArgAsn : 112 ||||||:!!||| !! ! !!:|||||| !! ! !:!|||::::::|||:::... ProValIleLysSerPheTyrAspAspTrpLysThrSerArgThrLysGluGluLysGlu 31129 : CCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACcaaggaggagaaggag : 31186 113 : IleMetIleArgArgAlaArgIleAlaArgIleIleThrIleCysGlyTyrValValMet : 132 !|||:!:!:!||||||!:!.!!|||!:! !|||:!!|||!! !!! |||:!!! ThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIleTrpCysSerValLeuThr 31187 : acCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGGTGCTCAGTATTAACC : 31246 133 : PheGlySerPheIlePheAlaValValLeuProPhePheGlyIleSerLeuArgHisMet : 152 !!. !! ! !!! ! !! !:!! !|||! ! !:: !|||! !! !! ! !!! ! LeuThrMetValThrValTyrLeuSerLeuArgAlaTrpIleIleTyrGlnLeuAspArg 31247 : TTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATCTACCAGCTTGATAGG : 31306 153 : ThrAsnIleThrAspProGlyLysLeuMetProLeuGlnSerTyrTyrIleTyrAspIle : 172 .!!||| ! ! ! !! !:::|||:!:! !! !! .!!|||!:! !!:!|||||| AlaAsn---GlnLysGlnAspArgLeuLeuLeuTyrProGlyTyrPheProPheAspIle 31307 : GCAAAC---CAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTATTTTCCCTTCGATATT : 31363 173 : AsnAsnSerProIleTyrGluIleThrTyrPheIleGlnGlyIleSerLeuMetLeuAla : 192 ..! ! ! !:!! ! ||| !!||| !|||! !:!!:!! ! ! !||| ArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeuAlaAlaTyrSerAla 31364 : CGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCAGCGTATTCCGCT : 31423 193 : AlaThrValTyrSerSerThrAspAsnPheLeuGlyLeuLeuValLeuHisValCysGly : 212 !.!! ! !|||!!!!!!..!|||!..|||:!!!.!:!!|||:!!:!!|||:!!|||||| ValIleSerTyrThrThrValAspThrPheIleAlaMetLeuIleMetHisIleCysGly 31424 : GTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATAATGCACATATGCGGA : 31483 213 : GlnLeuGluAsnLeuArgLysArgPheLeuLeuLeuAspGlnAspAspPheLys : 230 |||!!!|||! ||||||:!!!:!!!.! ! !||| .!.|||!!: ||| GlnPheGluIleLeuArgGlnLysLeuArgArgLeuMetAspAspGluLysLys 31484 : CAATTTGAGATACTGAGACAGAAATTACGAAGGCTGATGGATGACGAGAAGAAG : 31539 vulgar: CbirOr103NTE 92 230 . KQ414804.1 31128 31539 + 148 M 62 186 G 1 0 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31129 31539 148 + . gene_id 3 ; sequence CbirOr103NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31129 31539 . + . KQ414804.1 exonerate:protein2genome:local exon 31129 31539 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 31129 31539 148 + . alignment_id 3 ; Query CbirOr103NTE ; Align 31129 93 186 ; Align 31315 156 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr103NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 315 -> 368 Target range: 34375 -> 34534 316 : ValIleGlnCysAsnGluPheTyrLysAlaAlaCysGluTyrLysTrpTyrGluLeuGln : 335 :!!.!!||| !!!..|||.!. !!!.:!!|||! !|||! !!.||||||.!.:!!..! IlePheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSer 34376 : ATATTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCA : 34433 336 : ProLysGlnValGlnSerLeuLeuIleIleMetValHisAlaAsnArgProLeuTyrLeu : 355 ||| !:!!!.!:!!!!!||||||.!!|||||| !....!! !|||||||||! !||| ProProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeu 34434 : CCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTG : 34493 356 : ThrAlaGlyLysLeuPheProMetThrMetSerThrPhe : 368 ||||||||||||!!! ! !!.!.:!!|||..!! !||| ThrAlaGlyLysPheSerThrPheSerMetGluMetPhe 34494 : ACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTC : 34534 vulgar: CbirOr103NTE 315 368 . KQ414804.1 34375 34534 + 101 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34376 34534 101 + . gene_id 4 ; sequence CbirOr103NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 34376 34534 . + . KQ414804.1 exonerate:protein2genome:local exon 34376 34534 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34376 34534 101 + . alignment_id 4 ; Query CbirOr103NTE ; Align 34376 316 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr117NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 337 -> 395 Target range: 51888 -> 52062 338 : LysSerAspAsnIleArgThrValAlaTyrAsnLeuGluTrpTyrSerPheProArgLys : 357 ::!|||! !.!.||| !!.!!.!||||||:!!! !|||||||||!:!!!. !!! !||| GlnSerValGluIleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLys 51889 : caGAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAA : 51946 358 : HisAlaLeuSerIleIleLeuIleMetAlaArgSerArgArgProCysLysIleThrSer : 377 :!!||| !! !:!!:!!:!!|||||| !|||:!!||| !||| :!!||||||:!! AsnAlaLysLeuLeuLeuIleIleMetArgArgAlaArgLeuProLeuGlnIleThrAla 51947 : AATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCA : 52006 378 : GlyArgPheHisThrMetSerPheSerTyrTyrLysThrValLeuThrThrLeu : 395 ||||||||| !|||.!.!!!.!.! ! |||..! !||| ||| ||| GlyArgPheAlaThrPheThrLeuMetLeuTyrSerGlnValSerThrIleLeu 52007 : GGTAGATTTGCTACTTTCACTCTGATGCTGTATTCACAGGTaagtacaatttta : 52062 vulgar: CbirOr117NTE 337 395 . KQ414804.1 51888 52062 + 117 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51889 52062 117 + . gene_id 1 ; sequence CbirOr117NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 51889 52062 . + . KQ414804.1 exonerate:protein2genome:local exon 51889 52062 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51889 52062 117 + . alignment_id 1 ; Query CbirOr117NTE ; Align 51889 338 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr94PNC Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 3 -> 228 Target range: 30797 -> 31533 4 : AlaIleGluValAsnArgPheGlyLeuAspLeuIleGlyLeuTrpProThrIleAspLys : 23 |||:!!! ! !||||||!::..!:!!!!:|||:!!|||:!!|||||| ! ..!!:! AlaLeuGlyTrpAsnArgTrpAsnMetGluLeuValGlyIleTrpProGluProSerArg 30798 : GCACTTGGATGGAACCGTTGGAACATGGAACTGGTTGGAATTTGGCCAGAACCGAGCAGA : 30855 24 : AlaAlaLysAsnSerTyrIleSerAspLeuArgValSerIleIlePheIleIleIleAla : 43 :!!! !:!!... !:: !:! ! ! !:!! !.!!||||||:::|||||| SerAspGlnArg---TrpProAsnPheLysAlaLeuLeuPheIlePheValIleIlePhe 30856 : TCTGATCAACGA---TGGCCGAATTTCAAGGCTTTGCTGTTCATTTTTGtgataatattt : 30912 44 : PheAlaSerGlyIleProPheIleTrpSerLeuIleArgValArgSerAspIleMetLeu : 63 |||...:!!||| ||| ! ! !!:!|||:!! !:!! !!.!!|||:!! ||| PheGlyThrGly---ProGlnSerValAsnLeuLeuPheIleTrpGlyAspLeuGlyLeu 30913 : tttggaaCCGGA---CCTCAGAGCGTGAATCTACTTTTCATATGGGGAGACCTTGGATTG : 30969 64 : ValMetAspAsnLeuGln<->ValThrLeuThrIleMetAlaGlyLeuLeuLysLeuIle : 82 |||! !!!:||||||... !.!!.!:!! !! !!!: !!.!:!!:!!||||||||| ValThrGluAsnLeuSerThrAlaAsnIleProGlyIleAsnAlaMetMetLysLeuIle 30970 : GTCACGGAAAATCTGTCCACGGCTAATATTCCCGGCATAAACGCCATGATGAAACTGATT : 31029 83 : IleIleArgTrpLysGlnThr{A} >>>> Target Intron 1 >>>> {la}Leu : 91 ||| ! !! ! ::! !{|} 67 bp {||}.!! IleAlaTrpHisHisArgAsp{A}++ ++{la}Phe 31030 : ATCGCCTGGCATCACAGAGAT{G}gt.........................ag{ct}tTC : 31123 92 : LeuSerIleIleLysMetMetAlaGluAspTrpIleAlaPheLysLeuAspThrGlnArg : 111 ! !!:!!|||||| .!. !!!:||||||! !.!!! !:! :::::: LysProValIleLysSerPheTyrAspAspTrpLysThrSerArgThrLysGluGluLys 31124 : AAGCCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACcaaggaggagaag : 31183 112 : AspValMetMetLysTrpAlaArgThrAlaArgLeuIleValIleCysGlyTyrIleVal : 131 :::..!|||:!!||| ! |||!:! !|||!:!! !||| !|||!! !!! :!!:!! GluThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIleTrpCysSerValLeu 31184 : gagacCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGGTGCTCAGTATTA : 31243 132 : ThrGlyPheGlyIleIleValValIleIleProProTyrPheGlyIleProPheArgArg : 151 ||| !!. !!!::!!..!||| !:!! !! ! !!||| !!:!!:!! ! Thr---LeuThrMetValThrValTyrLeuSerLeuArgAlaTrpIleIleTyrGlnLeu 31244 : ACC---TTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATCTACCAGCTT : 31300 152 : LeuSerAsnLeuThrAspSerAspLysProLeuProLeuGlnThrTyrTyrPheTyrAsp : 171 !!!! ! ! ! ..!|||:::! !|||! !! !! !|||!:! !!:!||| AspArgAlaAsnGlnLysGlnAspArgLeuLeuLeuTyrProGlyTyrPheProPheAsp 31301 : GATAGGGCAAACCAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTATTTTCCCTTCGAT : 31360 172 : ThrAspProSerProGlnPheGluLeuThrPheLeuIleGlnAlaIleThrMetPheLeu : 191 ! ! !|||! ! ! !.!. !! !||| !!!! !|||!.!:!!.!! !!:!! ! IleArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeuAlaAlaTyrSer 31361 : ATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCAGCGTATTCC : 31420 192 : AlaAlaIleSerTyrThrSerValAspAlaLeuLeuGlyLeuValIleLeuHisThrCys : 211 |||!.!||||||||||||!!!||||||.!!!!!:!!!.!:!!:!!|||:!!|||! !||| AlaValIleSerTyrThrThrValAspThrPheIleAlaMetLeuIleMetHisIleCys 31421 : GCTGTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATAATGCACATATGC : 31480 212 : GlyGlnLeuGluAsnPheLysTyrGlnLeuAlaAsnMetIleAlaSerGlu : 228 ||||||!!!|||! .!.!:! ! :!!||| !!..:!!!!:! !..!||| GlyGlnPheGluIleLeuArgGlnLysLeuArgArgLeuMetAspAspGlu 31481 : GGACAATTTGAGATACTGAGACAGAAATTACGAAGGCTGATGGATGACGAG : 31533 vulgar: CbirOr94PNC 3 228 . KQ414804.1 30797 31533 + 161 M 24 72 G 1 0 M 19 57 G 1 0 M 21 63 G 0 3 M 20 60 S 0 1 5 0 2 I 0 63 3 0 2 S 1 2 M 42 126 G 1 0 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 30798 31533 161 + . gene_id 1 ; sequence CbirOr94PNC ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 30798 31053 . + . KQ414804.1 exonerate:protein2genome:local exon 30798 31053 . + . insertions 3 ; deletions 2 KQ414804.1 exonerate:protein2genome:local splice5 31054 31055 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 31054 31120 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 31119 31120 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 31121 31533 . + . KQ414804.1 exonerate:protein2genome:local exon 31121 31533 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 30798 31533 161 + . alignment_id 1 ; Query CbirOr94PNC ; Align 30798 4 72 ; Align 30870 29 57 ; Align 30927 49 63 ; Align 30993 70 60 ; Align 31123 91 126 ; Align 31249 134 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr104NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 290 -> 385 Target range: 33840 -> 34662 291 : ThrArgLeuThrPheIleValIleIleSerLeuAsnThrPheThrHisMetCysLeuTyr : 310 ..!!:!||| !|||.!!|||:!:.!! !! ! !! !.!!..!|||!!:! !:!!||| ValGlnLeuLeuPhePheValLeuPheValCysPheIleLeuValHisIleTyrIleTyr 33841 : GTGCAATTGCTTTTCTTCGTGCTGTTCGTATGCTTCATCCTTGTACACATCTACATTTAT : 33898 311 : CysIleValGlyGluIleLeuLeuAlaGln >>>> Target Intron 1 >>>> C : 321 ||| !:!!||||||!!:||||||.!!!!. 454 bp CysTyrIleGlyGluMetLeuLeuThrHis+- ++S 33899 : TGTTACATAGGAGAGATGCTACTCACACATgc.........................agA : 34385 322 : ysGluAlaValTyrGluAlaAlaTyrGluTyrAsnTrpTyrThrLeuGluSerLysLysA : 341 !!..!! !:!! !.!.:!!|||||||||! |||||||||!.!:!!..! !! !:!!| erArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProProGluA 34386 : GCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCAGAAG : 34445 342 : laArgAsnLeuLeuMetIleMetIleArgAlaAsnLysProLeuTyrLeuThrAlaGlyL : 361 ||!:! !||||||.!.|||||| !|||.!! !:::||||||! !||||||||||||| laLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAlaGlyL 34446 : CCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCAGGAA : 34505 362 : ysLeuPheProMetThrMetAlaMetPheCysAsn >>>> Target Intron 2 >> : 373 ||!!! ! !!.!.:!!|||! !|||||| !!!.! 83 bp ysPheSerThrPheSerMetGluMetPheSerThr++ 34506 : AATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt....................... : 34543 374 : >> LeuLeuLysThrSerGlyGlyTyrIleSerValLeuLeu : 385 :::|||||||||:!! !||||||:!!|||||||||||| ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeu 34544 : ..agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTC : 34662 vulgar: CbirOr104NTE 290 385 . KQ414804.1 33840 34662 + 167 M 30 90 5 0 2 I 0 450 3 0 2 M 52 156 5 0 2 I 0 79 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33841 34662 167 + . gene_id 1 ; sequence CbirOr104NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33841 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33841 33930 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 1 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 1 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34662 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34662 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33841 34662 167 + . alignment_id 1 ; Query CbirOr104NTE ; Align 33841 291 90 ; Align 34385 321 156 ; Align 34624 373 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr104NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 93 -> 225 Target range: 36569 -> 36953 94 : LeuLeuAsnIleIleLysAspAspTrpLeuLysLeuLysThrSerLysGluArgAsnAla : 113 |||:!!!:! !||| ||||||||| !:!!! !! !!..! !!!:|||:!!.!! LeuMetSerGlnIlePheAspAspTrpAlaGluProIleProGluValAspArgHisThr 36570 : TTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACG : 36627 114 : MetIleLysGlnAlaArgIleAlaArgMetLeuThrIleTyrGlyTyrPheMetMetLeu : 133 |||:!:||| |||!:!|||::!||||||:!!:!!||| ! !!! !.!!:!!! !! ! MetLeuLysThrAlaLysIleSerArgMetIleSerIleValCysSerIleLeuThrTyr 36628 : ATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTCTGTTCTATCCTGACGTAT : 36687 134 : MetSerValThrLeuAlaPheLeuLeuProLeuPheGlyIleSerMetArgTyrArgThr : 153 :!:! !||| ||||||||||||! !! !! !.!! !!! !||||||!:! ValMetVal---LeuAlaPheLeuSerLeuGlnIleTrpSerSerMetGln--------- 36688 : GTCATGGTT---TTGGCCTTCTTGTCACTTCAAATTTGGAGCAGCATGCAA--------- : 36738 154 : AsnArgThrAspProAsnAsnLysTyrLeuProLeuGlnThrTyrTyrValTyrAspLys : 173 |||! !:!!!!: !||| ! |||! !:!!! !.!! !:! !||||||! ! AsnThrSerGluPheAsnValGlyGlyLeuLeuIleProAlaThrPheProTyrAspThr 36739 : AACACCTCGGAGTTCAACGTAGGAGGACTACTTATCCCGGCCACATTTCCATACGACACG : 36795 174 : AspLysSerProPhePheGluIleThrTyrValLeuGlnCysIleSerLeuSerLeuAla : 193 :!!||||||||| !!:!|||||||||!:::!! !|||! !:!:.!! ! !|||::! AsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrValLeuSer 36796 : AATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGC : 36855 194 : GlyGlyIleTyrThrSerThrAspSerPheLeuGlyValLeuValPheHisValCysGly : 213 !.! ! !|||:!!!!! !|||!!!|||:!!!.!|||||||||!!.|||:!!|||||| AlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHisIleCysGly 36856 : GCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGC : 36915 214 : GlnLeuGlnAsnLeuLysGluArgValIleAsnLeu : 225 |||||| !|||::: !:!! |||||| GlnLeuThrValLeuArgIleAlaLeuGluAsnLeu 36916 : CAATTAACTGTTCTCCGCATTGCCCTCGAGAATCTT : 36953 vulgar: CbirOr104NTE 93 225 . KQ414804.1 36569 36953 + 149 M 43 129 G 1 0 M 13 39 G 3 0 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36570 36953 149 + . gene_id 2 ; sequence CbirOr104NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36570 36953 . + . KQ414804.1 exonerate:protein2genome:local exon 36570 36953 . + . insertions 0 ; deletions 4 KQ414804.1 exonerate:protein2genome:local similarity 36570 36953 149 + . alignment_id 2 ; Query CbirOr104NTE ; Align 36570 94 129 ; Align 36699 138 39 ; Align 36738 154 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr104NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 162 -> 219 Target range: 44874 -> 45045 163 : LeuProLeuGlnThrTyrTyrValTyrAspLysAspLysSerProPhePheGluIleThr : 182 |||! !!!!!::.!!|||!:! !||||||!..||| |||||| !!:!|||.!!||| LeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThr 44875 : CTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACA : 44932 183 : TyrValLeuGlnCysIleSerLeuSerLeuAlaGlyGlyIleTyrThrSerThrAspSer : 202 :!! !||| !|||:!! !! !! !|||!.! !! !||||||:!!..!|||!!! ValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThr 44933 : GTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACT : 44992 203 : PheLeuGlyValLeuValPheHisValCysGlyGlnLeuGlnAsnLeuLys : 219 |||:!!! !:!!|||:!!.!.||||||||||||||||||..!||||||!:! PheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArg 44993 : TTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGA : 45045 vulgar: CbirOr104NTE 162 219 . KQ414804.1 44874 45045 + 136 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44875 45045 136 + . gene_id 3 ; sequence CbirOr104NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44875 45045 . + . KQ414804.1 exonerate:protein2genome:local exon 44875 45045 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44875 45045 136 + . alignment_id 3 ; Query CbirOr104NTE ; Align 44875 163 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr109PNI Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 228 Query range: 1 -> 218 Target range: 35909 -> 36935 2 : GluTrpAlaIleGluLeuAsnArgLeuSerLeuThrPheLeuGlyIleTrpProGluAsn : 21 !!:!::|||!!:! !! !||||||!!!||||||:!! ! ||||||:!:||||||||| AspPheAlaMetGlyTrpAsnArgPheSerLeuSerValLeuGlyValTrpProGluPro 35910 : GATTTTGCTATGGGATGGAATCGTTTCAGTTTATCTGTACTTGGCGTGTGGCCAGAACCG : 35967 22 : HisLysThrLysGlnLysLysLeuMetSerAspIleArgValIleIleIleLeuAsnLeu : 41 ...|||! !....!. !..!! !.!.:!!..!! ! !:!!.!! .!! !!.!||| ArgLysMetSerAsnLeuSerArgPheAlaSerAsnPheIlePheTrpPheThrThrLeu 35968 : AGAAAGATGTCTAACCTGTCACGATTCGCGTCTAACTTTATATTCTGGTTCACGACTTTG : 36027 42 : IleThrTrpIleCysLeu<->IleProSerLeuHisSerLeuLeuLysIleTyrAspAsp : 60 |||||| :!!! !:!! !|||..!:!! !|||:!! ::: IleThrValValPheIleCysAlaProGlnMetThrHisLeuValLeuLysSerThrAsn 36028 : ATAACGGTTGTCTTCATATGCGCTCCCCAAATGACGCATTTGGTAttaaaatcgacgaat : 36087 61 : IleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuMetAlaIleIleLys : 80 ::: ..!..!|||!!:||||||..! !!.!:!!|||:!!|||.!.:!!:!: !||| LeuAspGluValIleGluAsnLeuSerValAsnIleProMetLeuPheSerLeuGlyLys 36088 : ttgGACGAGGTGATAGAGAATCTGTCGGTCAACATACCGATGCTCTTCTCATTGGGCAAG : 36147 81 : LeuPheIleIleTrpGlnLysGlnTyr{A} >>>> Target Intron 1 >>>> { : 90 ! !.!!|||:!: ! ! :::::! ! {!} 381 bp { GlnIleIleLeuArgTyrArgArgLys{A}++ ++{ 36148 : CAAATCATTCTGCGTTATCGTAGAAAA{G}gt.........................ag{ : 36559 91 : sp}IleLeuProLeuLeuAsnMetIleLysAspAspTrpLeuArgProLysThrSerGlu : 109 }:!!:!! !|||:!!!:!...||| ||||||||| !..!|||! !!..!! ! la}LeuValPheLeuMetSerGlnIlePheAspAspTrpAlaGluProIleProGluVal 36560 : CG}CTAGTATTCTTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTG : 36615 110 : GluArgSerValMetIleLysGlnAlaArgIleAlaArgIleLeuThrIlePheGlyCys : 129 !!:||| !..!|||:!:||| |||!:!|||::!|||!!::!!:!!||| !! ||| AspArgHisThrMetLeuLysThrAlaLysIleSerArgMetIleSerIleVal---Cys 36616 : GATCGCCACACGATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTC---TGT : 36672 130 : PheIleMetLeuIleSerValIlePheAlaLeuValPheProLeuPheGlyIleSerMet : 149 ! !|||:!! ! ! !:!!:!!!!.|||!!!:!!! ! !! !.!! !!! !|||||| SerIleLeuThrTyrValMetValLeuAlaPheLeuSerLeuGlnIleTrpSerSerMet 36673 : TCTATCCTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGCAGCATG : 36732 150 : ArgTyrArgThrAsnArgThrAspProAspLysSerLeuProPheGlnThrCysTyrVal : 169 !:! !!! !:!!.!. !!.!! !! ! !:!!||| .!! !:! ! GlnAsnThrSerGluPheAsnValGlyGlyLeuLeuIlePro------AlaThrPhePro 36733 : CAAAACACCTCGGAGTTCAACGTAGGAGGACTACTTATCCCG------GCCACATTTCCA : 36786 170 : TyrAspLysAspLysSerProPhePheGluIleThrTyrIleLeuGlnSerIleSerSer : 189 ||||||! !:!!||||||||| !!:!|||||||||!:::!! !|||! !:!:.!!!!! TyrAspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThr 36787 : TACGACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACA : 36846 190 : MetLeuLeuAlaPheMetTyrSerSerThrAspSerPheLeuSerLeuLeuValPheHis : 209 :!!||| !|||.!. ||||||!!! !|||!!!|||:!!:!!:!!||||||!!.||| ValLeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHis 36847 : GTGTTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACAC : 36906 210 : ValCysGlyGlnLeuGluAsnLeuLys : 218 :!!|||||||||||| !|||::: IleCysGlyGlnLeuThrValLeuArg 36907 : ATATGCGGCCAATTAACTGTTCTCCGC : 36935 vulgar: CbirOr109PNI 1 218 . KQ414804.1 35909 36935 + 228 M 46 138 G 0 3 M 42 126 S 0 1 5 0 2 I 0 377 3 0 2 S 1 2 M 37 111 G 1 0 M 35 105 G 2 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 35910 36935 228 + . gene_id 1 ; sequence CbirOr109PNI ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 35910 36177 . + . KQ414804.1 exonerate:protein2genome:local exon 35910 36177 . + . insertions 3 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 36178 36179 . + . intron_id 1 ; splice_site "gt" KQ414804.1 exonerate:protein2genome:local intron 36178 36558 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 36557 36558 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 36559 36935 . + . KQ414804.1 exonerate:protein2genome:local exon 36559 36935 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 35910 36935 228 + . alignment_id 1 ; Query CbirOr109PNI ; Align 35910 2 138 ; Align 36051 48 126 ; Align 36561 91 111 ; Align 36672 129 105 ; Align 36777 166 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr109PNI Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 161 -> 218 Target range: 44874 -> 45045 162 : LeuProPheGlnThrCysTyrValTyrAspLysAspLysSerProPhePheGluIleThr : 181 |||! !|||!::.!!! !!:! !||||||!..||| |||||| !!:!|||.!!||| LeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThr 44875 : CTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACA : 44932 182 : TyrIleLeuGlnSerIleSerSerMetLeuLeuAlaPheMetTyrSerSerThrAspSer : 201 ||| !|||! !|||:!!:!!.!.! ! !||| !! |||!!!:!!..!|||!!! ValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThr 44933 : GTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACT : 44992 202 : PheLeuSerLeuLeuValPheHisValCysGlyGlnLeuGluAsnLeuLys : 218 |||:!! !:!!|||:!!.!.||||||||||||||||||..!||||||!:! PheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArg 44993 : TTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGA : 45045 vulgar: CbirOr109PNI 161 218 . KQ414804.1 44874 45045 + 134 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44875 45045 134 + . gene_id 2 ; sequence CbirOr109PNI ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44875 45045 . + . KQ414804.1 exonerate:protein2genome:local exon 44875 45045 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44875 45045 134 + . alignment_id 2 ; Query CbirOr109PNI ; Align 44875 162 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr95NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 323 -> 387 Target range: 39971 -> 40241 324 : AlaValTyrGlnAlaIleTyrAspPheAspTrpTyrLysLeuGluAlaArgLysAlaArg : 343 !.!:!! !|||:!! !||||||! !:!!|||||| ! ||| ! !!!:! ! ||| ! GlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHisAlaVal 39972 : GGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCATGCTGTT : 40029 344 : GlyLeuValLeuLeuMetIleArgAlaSerGluProPheArgIleThrAlaGlyLysVal : 363 ..!||||||:!!:!!!!: !||||||..!! ! !!|||!:!||||||||||||||| !! SerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGlyLysPhe 40030 : TCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGAAAATTC : 40089 364 : IleProLeuThrLeuThrThrPheCysSer >>>> Target Intron 1 >>>> L : 374 ! !|||!!!:!!||| ! !||| !:!! 78 bp : SerProPheSerLeuGluLeuPheAsnAla++ ++V 40090 : AGTCCCTTTTCTCTCGAGCTGTTTAACGCTgt.........................agG : 40200 375 : euLeuLysThrSerAlaGlyTyrIleSerPheLeuLeuAla : 387 !!|||||||||||||||||||||:!!||| ! ||||||||| alLeuLysThrSerAlaGlyTyrLeuSerValLeuLeuAla 40201 : TTTTAAAAACGTCTGCTGGATATCTTTCCGTGTTGCTAGCT : 40241 vulgar: CbirOr95NTE 323 387 . KQ414804.1 39971 40241 + 134 M 50 150 5 0 2 I 0 74 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39972 40241 134 + . gene_id 1 ; sequence CbirOr95NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39972 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39972 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40241 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40241 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39972 40241 134 + . alignment_id 1 ; Query CbirOr95NTE ; Align 39972 324 150 ; Align 40200 374 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr107NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 94 -> 224 Target range: 36569 -> 36950 95 : LeuLeuAsnMetIleLysAspAspTrpLeuArgSerLysThrSerGluGluArgAsnVal : 114 |||:!!!:!...||| ||||||||| !..! !!! !!..!! !!!:|||:!!..! LeuMetSerGlnIlePheAspAspTrpAlaGluProIleProGluValAspArgHisThr 36570 : TTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACG : 36627 115 : MetIleLysGlnAlaArgIleAlaArgIleLeuThrIlePheGlyCysPheValThrGln : 134 |||:!:||| |||!:!|||::!|||!!::!!:!!||| !! !!! !.!!:!!||| ! MetLeuLysThrAlaLysIleSerArgMetIleSerIleValCysSerIleLeuThrTyr 36628 : ATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTCTGTTCTATCCTGACGTAT : 36687 135 : ThrAlaAlaIleIleIleLeuLeuLeuSerValCysGlyIleSerMetArgTyrArgThr : 154 ..! !!.!:!: !.!!|||! !|||..!:!!!! |||! ! ! ! !.!||| ValMetValLeuAlaPheLeuSerLeuGlnIleTrp------SerSerMetGlnAsnThr 36688 : GTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGG------AGCAGCATGCAAAACACC : 36741 155 : AsnArgThrAspSerAspLysLeuLeuProLeuProSerTyrTyrIleTyrAspValSer : 174 :::..! !:!! !! !|||||| :!!|||:!! !:! !||||||..!!:! SerGluPheAsnValGlyGlyLeuLeu---IleProAlaThrPheProTyrAspThrAsn 36742 : TCGGAGTTCAACGTAGGAGGACTACTT---ATCCCGGCCACATTTCCATACGACACGAAT : 36798 175 : AsnSerProLeuTyrGluValIlePheValLeuGlnSerPheSerPheMetIleAlaGly : 194 !!.|||||| !||||||:!!! !!:::!! !|||! ! ! .!! :!!:!:::!!.! LysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrValLeuSerAla 36799 : AAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCG : 36858 195 : MetMetTyrThrGlyThrAspThrPheMetSerLeuLeuIlePheHisValCysGlyGln : 214 !!: |||:!! !! !|||||||||:!::!!:!!|||:!:!!.|||:!!||||||||| IleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHisIleCysGlyGln 36859 : ATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAA : 36918 215 : LeuGluAsnLeuLysAlaArgIleSerAsn : 224 ||| !|||::: ! !:!!..!||| LeuThrValLeuArgIleAlaLeuGluAsn 36919 : TTAACTGTTCTCCGCATTGCCCTCGAGAAT : 36950 vulgar: CbirOr107NTE 94 224 . KQ414804.1 36569 36950 + 157 M 52 156 G 2 0 M 15 45 G 1 0 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36570 36950 157 + . gene_id 1 ; sequence CbirOr107NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36570 36950 . + . KQ414804.1 exonerate:protein2genome:local exon 36570 36950 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 36570 36950 157 + . alignment_id 1 ; Query CbirOr107NTE ; Align 36570 95 156 ; Align 36726 149 45 ; Align 36771 165 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr107NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 134 -> 219 Target range: 44793 -> 45045 135 : ThrAlaAlaIleIleIleLeuLeuLeuSerValCysGlyIleSerMetArgTyrArgThr : 154 !:!::!.!!:!::!! !! !:!!:!! !:!! ! !|||! !:!:|||!:!! !||| SerSerThrValLeuCysHisIleValValIleThrTyrIlePheLeuArgPheLeuThr 44794 : AGCAGCACAGTGTTATGTCACATTGTGGTCATCACTTATATATTTCTACGATTCCTCACC : 44851 155 : AsnArgThrAspSerAspLysLeuLeuProLeuProSerTyrTyrIleTyrAspValSer : 174 !..!:! !..!.!! !!:!|||||| !!!! !:!!|||!:! !|||||| !..! ArgLysTyrSerGlyThrArgLeuLeu---PheArgAlaTyrPheProTyrAspSerAsp 44852 : AGGAAGTACAGCGGCACCAGACTACTC---TTCCGTGCTTATTTCCCTTACGACAGCGAT : 44908 175 : AsnSerProLeuTyrGluValIlePheValLeuGlnSerPheSerPheMetIleAlaGly : 194 !|||||| !|||||| !!! ! ! :!! !|||! !.!.:!! !.!. !|||!.! ValSerProAsnTyrGluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAla 44909 : GTCAGTCCAAATTACGAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCC : 44968 195 : MetMetTyrThrGlyThrAspThrPheMetSerLeuLeuIlePheHisValCysGlyGln : 214 ! ! ||||||!.!..!|||||||||!!: !:!!||||||.!.||||||||||||||| ThrThrTyrThrAlaValAspThrPheIleValMetLeuIleLeuHisValCysGlyGln 44969 : ACCACATACACAGCCGTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAA : 45028 215 : LeuGluAsnLeuLys : 219 |||..!||||||!:! LeuSerAsnLeuArg 45029 : CTTTCGAATTTGAGA : 45045 vulgar: CbirOr107NTE 134 219 . KQ414804.1 44793 45045 + 131 M 29 87 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44794 45045 131 + . gene_id 2 ; sequence CbirOr107NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44794 45045 . + . KQ414804.1 exonerate:protein2genome:local exon 44794 45045 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 44794 45045 131 + . alignment_id 2 ; Query CbirOr107NTE ; Align 44794 135 87 ; Align 44881 165 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr107NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 317 -> 385 Target range: 34375 -> 34662 318 : ValIleGlnTyrAspGlyIleTyrGluAlaValCysGlnTyrGluTrpTyrAsnLeuLys : 337 :!!.!!||| ! ! !!!: !.!.:!!!.!! !:!!! .!.|||||||||:!!..! IlePheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSer 34376 : ATATTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCA : 34433 338 : ProLysGlnAlaLysAsnLeuLeuAsnIleMetMetGluThrLysArgProLeuHisLeu : 357 ||| !:!!|||||| !|||||| !|||||| ..!||| ||||||||| !||| ProProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeu 34434 : CCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTG : 34493 358 : ThrAlaGlyLysLeuPheProMetThrIleAlaThrLeuCysAsn >>>> Target I : 373 ||||||||||||!!! ! !!.!.:!!!!:! !! !!!! !!!.! 83 ThrAlaGlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34494 : ACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt............. : 34543 374 : ntron 1 >>>> LeuLeuGlnThrSerGlyGlyTyrIleSerValLeuLeu : 385 bp :::|||:!!|||:!! !||||||:!!|||||||||||| ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeu 34544 : ............agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTC : 34662 vulgar: CbirOr107NTE 317 385 . KQ414804.1 34375 34662 + 114 M 55 165 5 0 2 I 0 79 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34376 34662 114 + . gene_id 3 ; sequence CbirOr107NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34376 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34376 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34662 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34662 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34376 34662 114 + . alignment_id 3 ; Query CbirOr107NTE ; Align 34376 318 165 ; Align 34624 373 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr97NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 168 Query range: 3 -> 222 Target range: 30797 -> 31512 4 : AlaIleGlnLeuAsnArgPheGlyLeuGluLeuIleGlyLeuTrpProGlyAsnAspGlu : 23 |||:!! !! !||||||!::..!:!!||||||:!!|||:!!|||||| .!. ... AlaLeuGlyTrpAsnArgTrpAsnMetGluLeuValGlyIleTrpPro---GluProSer 30798 : GCACTTGGATGGAACCGTTGGAACATGGAACTGGTTGGAATTTGGCCA---GAACCGAGC : 30852 24 : ValAlaGluValLysLeuAlaSerAspLeuArgValGlyIleIlePheValIleValThr : 43 !:!!!!: !::!! ! !!!:! ! ! !:!! !.!!||||||||||||::: ArgSerAspGlnArgTrpProAsnPheLysAlaLeuLeuPheIlePheValIleIlePhe 30853 : AGATCTGATCAACGATGGCCGAATTTCAAGGCTTTGCTGTTCATTTTTGtgataatattt : 30912 44 : LeuIleSerGlyIleProLeuValCysSerLeuValArgValTrpGlyAspMetIleLeu : 63 ... :!!||| |||! ! ! !:!|||:!! !:!!|||||||||:!: !||| PheGlyThrGly---ProGlnSerValAsnLeuLeuPheIleTrpGlyAspLeuGlyLeu 30913 : tttggaaCCGGA---CCTCAGAGCGTGAATCTACTTTTCATATGGGGAGACCTTGGATTG : 30969 64 : MetIleAspAsnLeuGln<->IleThrLeuProLeuLeuIleValSerLeuLysLeuVal : 82 :!:! !!:||||||... !!.!:!!||| !:!!! !!.!! !:!!||||||:!! ValThrGluAsnLeuSerThrAlaAsnIleProGlyIleAsnAlaMetMetLysLeuIle 30970 : GTCACGGAAAATCTGTCCACGGCTAATATTCCCGGCATAAACGCCATGATGAAACTGATT : 31029 83 : ValMetArgArgLysArgMet{A} >>>> Target Intron 1 >>>> {la}Leu : 91 :!! !!!.! ! ||| {|} 67 bp {||}.!! IleAlaTrpHisHisArgAsp{A}++ ++{la}Phe 31030 : ATCGCCTGGCATCACAGAGAT{G}gt.........................ag{ct}tTC : 31123 92 : LeuSerLeuValLysMetMetAlaGluAspTrpMetGluLeuLysThrAlaLysGluLys : 111 ! !!:!!:!!||| .!. !!!:||||||! ! !!:!||| :::|||||| LysProValIleLysSerPheTyrAspAspTrpLysThrSerArgThrLysGluGluLys 31124 : AAGCCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACcaaggaggagaag : 31183 112 : AspValMetIleGlyArgAlaHisLeuAlaArgAlaIleValIleSerGlyTyrValLeu : 131 :::..!|||:!: !|||||| ! !!!|||!:! !||| !|||!!! !!! |||||| GluThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIleTrpCysSerValLeu 31184 : gagacCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGGTGCTCAGTATTA : 31243 132 : MetValLeuAlaPheIleValValIleValLeuProTyrTyrGlyPheSerLeuThrArg : 151 ! :!! ! ! !!! !||| !:!! !|||! ! !:: !.!!! !! ! ! ! ThrLeuThrMetValThrValTyrLeuSerLeuArgAlaTrpIleIleTyrGlnLeuAsp 31244 : ACCTTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATCTACCAGCTTGAT : 31303 152 : HisLeuThrAsnLeuThrAspProGlyLysProLeuProLeuGlnThrTyrTyrPheTyr : 171 ... !!.!.!. ! !||| :::! !|||! !! !! !|||!:! !!:! ArgAlaAsnGlnLysGlnAsp------ArgLeuLeuLeuTyrProGlyTyrPheProPhe 31304 : AGGGCAAACCAGAAACAGGAT------CGTCTGCTCCTGTACCCTGGCTATTTTCCCTTC : 31357 172 : AspIleAsnArgSerProGlnPheGluLeuThrPheLeuIleGlnAlaIleThrIlePhe : 191 ||||||..!! !! ! ! !.!. !! !||| !!!! !|||!.!:!!.!! !:! AspIleArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeuAlaAlaTyr 31358 : GATATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCAGCGTAT : 31417 192 : LeuAlaAlaValValTyrThrSerValAspAlaPheLeuGlyLeuThrIleLeuHisLeu : 211 ! !|||!.!:!! !||||||!!!||||||.!!|||:!!!.!:!! !|||:!!|||:!! SerAlaValIleSerTyrThrThrValAspThrPheIleAlaMetLeuIleMetHisIle 31418 : TCCGCTGTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATAATGCACATA : 31477 212 : CysGlyGlnLeuGluAsnPheLysGlyArgIle : 222 |||||||||!!!|||! .!.!:! !!:!:!! CysGlyGlnPheGluIleLeuArgGlnLysLeu 31478 : TGCGGACAATTTGAGATACTGAGACAGAAATTA : 31512 vulgar: CbirOr97NTE 3 222 . KQ414804.1 30797 31512 + 168 M 16 48 G 1 0 M 27 81 G 1 0 M 21 63 G 0 3 M 20 60 S 0 1 5 0 2 I 0 63 3 0 2 S 1 2 M 68 204 G 2 0 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 30798 31512 168 + . gene_id 1 ; sequence CbirOr97NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 30798 31053 . + . KQ414804.1 exonerate:protein2genome:local exon 30798 31053 . + . insertions 3 ; deletions 2 KQ414804.1 exonerate:protein2genome:local splice5 31054 31055 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 31054 31120 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 31119 31120 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 31121 31512 . + . KQ414804.1 exonerate:protein2genome:local exon 31121 31512 . + . insertions 0 ; deletions 2 KQ414804.1 exonerate:protein2genome:local similarity 30798 31512 168 + . alignment_id 1 ; Query CbirOr97NTE ; Align 30798 4 48 ; Align 30846 21 81 ; Align 30927 49 63 ; Align 30993 70 60 ; Align 31123 91 204 ; Align 31327 161 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr97NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 159 -> 228 Target range: 44865 -> 45072 160 : GlyLysProLeuProLeuGlnThrTyrTyrPheTyrAspIleAsnArgSerProGlnPhe : 179 |||! !|||! !!!!!::.!!|||!:! !||||||! !:!! !||||||.!.!:! GlyThrArgLeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyr 44866 : GGCACCAGACTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTAC : 44923 180 : GluLeuThrPheLeuIleGlnAlaIleThrIlePheLeuAlaAlaValValTyrThrSer : 199 |||!!!||| ! :!! !||| !|||.!! !|||! !||||||..!..!||||||:!! GluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAla 44924 : GAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCC : 44983 200 : ValAspAlaPheLeuGlyLeuThrIleLeuHisLeuCysGlyGlnLeuGluAsnPheLys : 219 ||||||.!!|||:!!! !:!! !|||||||||:!!||||||||||||..!|||!!.!:! ValAspThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArg 44984 : GTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGA : 45043 220 : GlyArgIleAlaValLeuSerSerCys : 228 ..!..!.!!!.! !|||..!:!!||| AsnGluPheGlyLysLeuGlnAlaCys 45044 : AACGAATTCGGTAAGCTTCAAGCATGC : 45072 vulgar: CbirOr97NTE 159 228 . KQ414804.1 44865 45072 + 154 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44866 45072 154 + . gene_id 2 ; sequence CbirOr97NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44866 45072 . + . KQ414804.1 exonerate:protein2genome:local exon 44866 45072 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44866 45072 154 + . alignment_id 2 ; Query CbirOr97NTE ; Align 44866 160 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr97NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 79 -> 215 Target range: 36527 -> 36923 80 : LysLeuValValMetArgArgLysArgMetAlaLeuLeuSerLeuValLysMetMetAla : 99 ||||||::: ...! ! !:!:||||||:!!! !|||:!!!.....!!: ! LysLeuIlePheThrIleHisThrSerLeuAlaLeuValPheLeuMetSerGlnIlePhe 36528 : AAACtgattttcacaattcacACGTCTCTAGCGCTAGTATTCTTAATGAGCCAAATATTC : 36585 100 : GluAspTrpMetGluLeuLysThrAlaLysGluLysAspValMetIleGlyArgAlaHis : 119 !!:|||||| !|||! !! !!! ! !!!:::: !!..!|||:!: !! !||| ! AspAspTrpAlaGluProIleProGluValAspArgHisThrMetLeuLysThrAlaLys 36586 : GACGACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACGATGCTGAAGACCGCGAAA : 36645 120 : LeuAlaArgAlaIleValIleSerGlyTyrValLeuMetValLeuAlaPheIleValVal : 139 :!!::!||| !||| !||| |||! ! :!!|||.!!!:!:!!:!!||| IleSerArgMetIleSerIle---------ValCysSerIleLeuThrTyrValMetVal 36646 : ATTAGTCGAATGATATCCATA---------GTCTGTTCTATCCTGACGTATGTCATGGTT : 36696 140 : IleValLeuProTyrTyrGlyPheSerLeuThrArgHisLeuThrAsnLeuThrAspPro : 159 :!:!.!!!! !! ! !.!!!!! !!:!! !!!. !|||::: ! !:!! ! LeuAlaPheLeuSerLeuGlnIleTrpSerSerMetGlnAsnThrSerGluPheAsnVal 36697 : TTGGCCTTCTTGTCACTTCAAATTTGGAGCAGCATGCAAAACACCTCGGAGTTCAACGTA : 36756 160 : GlyLysProLeuProLeuGlnThrTyrTyrPheTyrAspIleAsnArgSerProGlnPhe : 179 ||| !|||! !:!!! !.!! !:! ||||||! |||!:!||||||.!.!:! Gly---GlyLeuLeuIleProAlaThrPheProTyrAspThrAsnLysSerProAsnTyr 36757 : GGA---GGACTACTTATCCCGGCCACATTTCCATACGACACGAATAAAAGTCCTAATTAC : 36813 180 : GluLeuThrPheLeuIleGlnAlaIleThrIlePheLeuAlaAlaValValTyrThrSer : 199 |||:!!|||!::||| !||| !:!: !! ! ! |||::!|||:!! !|||:!!!!! GluIleThrTrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSerCys 36814 : GAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGC : 36873 200 : ValAspAlaPheLeuGlyLeuThrIleLeuHisLeuCysGlyGlnLeu : 215 !!|||.!!|||:!!!.!:!! !:!:||||||:!!|||||||||||| PheAspThrPheValAlaValLeuValLeuHisIleCysGlyGlnLeu 36874 : TTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTA : 36923 vulgar: CbirOr97NTE 79 215 . KQ414804.1 36527 36923 + 131 M 47 141 G 3 0 M 31 93 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36528 36923 131 + . gene_id 3 ; sequence CbirOr97NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36528 36923 . + . KQ414804.1 exonerate:protein2genome:local exon 36528 36923 . + . insertions 0 ; deletions 4 KQ414804.1 exonerate:protein2genome:local similarity 36528 36923 131 + . alignment_id 3 ; Query CbirOr97NTE ; Align 36528 80 141 ; Align 36669 130 93 ; Align 36762 162 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr97NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 324 -> 391 Target range: 39971 -> 40250 325 : GlyIleTyrArgAlaMetCysAspLeuGluTrpTyrLysLeuGluSerArgLysAlaLys : 344 |||||| !!:!:!! ! !|||! !.!.|||||| ! ||| ! !!!:! ! ||| GlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHisAlaVal 39972 : GGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCATGCTGTT : 40029 345 : SerLeuIleProLeuMetIleArgAlaLysGlnProPheArgIleThrAlaGlyLysIle : 364 ||||||:!! !:!!!!: !||||||:!! ! !!|||!:!|||||||||||||||.!! SerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGlyLysPhe 40030 : TCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGAAAATTC : 40089 365 : PheProLeuThrMetThrThrPheCysSer >>>> Target Intron 1 >>>> L : 375 !|||!!!:!!:!: ! !||| !:!! 78 bp : SerProPheSerLeuGluLeuPheAsnAla++ ++V 40090 : AGTCCCTTTTCTCTCGAGCTGTTTAACGCTgt.........................agG : 40200 376 : euLeuLysThrSerAlaGlyTyrIleSerPheLeuLeuAlaGlnArgGlu : 391 !!|||||||||||||||||||||:!!||| ! |||||||||..!!:!!!: alLeuLysThrSerAlaGlyTyrLeuSerValLeuLeuAlaMetLysAsp 40201 : TTTTAAAAACGTCTGCTGGATATCTTTCCGTGTTGCTAGCTATGAAAGAC : 40250 vulgar: CbirOr97NTE 324 391 . KQ414804.1 39971 40250 + 131 M 50 150 5 0 2 I 0 74 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39972 40250 131 + . gene_id 4 ; sequence CbirOr97NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39972 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39972 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40250 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40250 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39972 40250 131 + . alignment_id 4 ; Query CbirOr97NTE ; Align 39972 325 150 ; Align 40200 375 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr102PNI Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 223 Query range: 1 -> 218 Target range: 35909 -> 36935 2 : GluTrpAlaIleGluLeuAsnArgLeuSerLeuThrLeuLeuGlyIleTrpProGluAsn : 21 !!:!::|||!!:! !! !||||||!!!||||||:!!:!!||||||:!:||||||||| AspPheAlaMetGlyTrpAsnArgPheSerLeuSerValLeuGlyValTrpProGluPro 35910 : GATTTTGCTATGGGATGGAATCGTTTCAGTTTATCTGTACTTGGCGTGTGGCCAGAACCG : 35967 22 : HisGluThrLysGlnLysLysLeuIleSerAspIleArgValIleIleThrLeuAsnLeu : 41 ...:!!! !....!. !..!! !.!!:!!..!! ! !:!!.!! ! !!.!||| ArgLysMetSerAsnLeuSerArgPheAlaSerAsnPheIlePheTrpPheThrThrLeu 35968 : AGAAAGATGTCTAACCTGTCACGATTCGCGTCTAACTTTATATTCTGGTTCACGACTTTG : 36027 42 : IleThrTrpIleCysPhe<->IleProSerLeuHisSerLeuLeuLysIleTyrAspAsp : 60 |||||| :!!! !.!. !|||..!:!! !|||:!! ::: IleThrValValPheIleCysAlaProGlnMetThrHisLeuValLeuLysSerThrAsn 36028 : ATAACGGTTGTCTTCATATGCGCTCCCCAAATGACGCATTTGGTAttaaaatcgacgaat : 36087 61 : IleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuMetAlaMetIleLys : 80 ::: ..!..!|||!!:||||||..! !!.!:!!|||:!!|||.!.:!!:!! !||| LeuAspGluValIleGluAsnLeuSerValAsnIleProMetLeuPheSerLeuGlyLys 36088 : ttgGACGAGGTGATAGAGAATCTGTCGGTCAACATACCGATGCTCTTCTCATTGGGCAAG : 36147 81 : LeuPheIleIleTrpGlnLysLysTyr{A} >>>> Target Intron 1 >>>> { : 90 ! !.!!|||:!: ! ! :::!:! ! {!} 381 bp { GlnIleIleLeuArgTyrArgArgLys{A}++ ++{ 36148 : CAAATCATTCTGCGTTATCGTAGAAAA{G}gt.........................ag{ : 36559 91 : sp}IleLeuProLeuLeuAsnMetIleLysAspAspTrpLeuArgProLysThrSerGlu : 109 }:!!:!! !|||:!!!:!...||| ||||||||| !..!|||! !!..!! ! la}LeuValPheLeuMetSerGlnIlePheAspAspTrpAlaGluProIleProGluVal 36560 : CG}CTAGTATTCTTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTG : 36615 110 : GluArgAsnValMetIleLysHisAlaArgIleAlaArgIleLeuThrIleValGlyTyr : 129 !!:|||:!!..!|||:!:||| !|||!:!|||::!|||!!::!!:!!|||||| AspArgHisThrMetLeuLysThrAlaLysIleSerArgMetIleSerIleVal------ 36616 : GATCGCCACACGATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTC------ : 36672 130 : PheValMetLeuLeuThrLeuIlePheGlyLeuValPheProLeuPheGlyPheSerIle : 149 ! :!!||||||! !:!!.!.! !|||!.!||| !! !.!! !.!!!!!! ! ---CysSerIleLeuThrTyrValMetValLeuAlaPheLeuSerLeuGlnIleTrpSer 36673 : ---TGTTCTATCCTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGC : 36726 150 : ArgTyrArgThrAsnArgThrAspProAspLysSerLeuProIleGlnThrTyrTyrIle : 169 !!! !:!!.!!.! ! ! ! !! !.!!|||! !|||! !.!! !:! ! SerMetGlnAsnThrSerGluPheAsnValGlyGlyLeuLeuIleProAlaThrPhePro 36727 : AGCATGCAAAACACCTCGGAGTTCAACGTAGGAGGACTACTTATCCCGGCCACATTTCCA : 36786 170 : TyrAspLysAspLysSerProPhePheGluIleThrTyrIleLeuGlnSerIleSerAla : 189 ||||||! !:!!||||||||| !!:!|||||||||!:::!! !|||! !:!:.!!.!! TyrAspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThr 36787 : TACGACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACA : 36846 190 : ValLeuLeuAlaPheMetTyrSerSerProAspSerPheLeuSerLeuLeuValPheHis : 209 |||||| !|||.!. ||||||!!! !|||!!!|||:!!:!!:!!||||||!!.||| ValLeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHis 36847 : GTGTTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACAC : 36906 210 : ValCysGlyGlnLeuGluAsnLeuLys : 218 :!!|||||||||||| !|||::: IleCysGlyGlnLeuThrValLeuArg 36907 : ATATGCGGCCAATTAACTGTTCTCCGC : 36935 vulgar: CbirOr102PNI 1 218 . KQ414804.1 35909 36935 + 223 M 46 138 G 0 3 M 42 126 S 0 1 5 0 2 I 0 377 3 0 2 S 1 2 M 37 111 G 3 0 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 35910 36935 223 + . gene_id 1 ; sequence CbirOr102PNI ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 35910 36177 . + . KQ414804.1 exonerate:protein2genome:local exon 35910 36177 . + . insertions 3 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 36178 36179 . + . intron_id 1 ; splice_site "gt" KQ414804.1 exonerate:protein2genome:local intron 36178 36558 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 36557 36558 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 36559 36935 . + . KQ414804.1 exonerate:protein2genome:local exon 36559 36935 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 35910 36935 223 + . alignment_id 1 ; Query CbirOr102PNI ; Align 35910 2 138 ; Align 36051 48 126 ; Align 36561 91 111 ; Align 36672 131 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr102PNI Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 284 -> 344 Target range: 34399 -> 34662 285 : AspAlaAlaTyrGluTyrAsnTrpTyrThrLeuGluProLysGluThrLysAsnLeuLeu : 304 :!!:!!|||||||||! |||||||||!.!:!!..!||| !|||.!!||| !|||||| AsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProProGluAlaLysCysLeuLeu 34400 : AATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCAGAAGCCAAGTGCCTTTTA : 34457 305 : MetIleMetIleArgAlaAsnLysProLeuTyrLeuThrAlaGlyLysLeuPheProMet : 324 .!.|||||| !|||.!! !:::||||||! !|||||||||||||||!!! ! !!.!. PheIleMetHisArgThrAlaArgProLeuCysLeuThrAlaGlyLysPheSerThrPhe 34458 : TTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCAGGAAAATTCAGTACCTTC : 34517 325 : ThrMetAlaThrPheCysAsn >>>> Target Intron 1 >>>> LeuLeuLysT : 335 :!!|||! !! !||| !!!.! 83 bp :::||||||| SerMetGluMetPheSerThr++ ++IleLeuLysT 34518 : TCCATGGAAATGTTCAGTACTgt.........................agattcTGAAAA : 34633 336 : hrSerGlyGlyTyrIleSerValLeuLeu : 344 ||:!! !||||||:!!|||||||||||| hrAlaMetGlyTyrLeuSerValLeuLeu 34634 : CAGCAATGGGATATCTTTCAGTTCTCCTC : 34662 vulgar: CbirOr102PNI 284 344 . KQ414804.1 34399 34662 + 142 M 47 141 5 0 2 I 0 79 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34400 34662 142 + . gene_id 2 ; sequence CbirOr102PNI ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34400 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34400 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34662 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34662 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34400 34662 142 + . alignment_id 2 ; Query CbirOr102PNI ; Align 34400 285 141 ; Align 34624 332 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr102PNI Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 161 -> 218 Target range: 44874 -> 45045 162 : LeuProIleGlnThrTyrTyrIleTyrAspLysAspLysSerProPhePheGluIleThr : 181 |||! !.!!!::.!!|||!:! !||||||!..||| |||||| !!:!|||.!!||| LeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThr 44875 : CTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACA : 44932 182 : TyrIleLeuGlnSerIleSerAlaValLeuLeuAlaPheMetTyrSerSerProAspSer : 201 ||| !|||! !|||:!!||| !!! ! !||| !! |||!!!:!! !|||!!! ValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThr 44933 : GTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACT : 44992 202 : PheLeuSerLeuLeuValPheHisValCysGlyGlnLeuGluAsnLeuLys : 218 |||:!! !:!!|||:!!.!.||||||||||||||||||..!||||||!:! PheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArg 44993 : TTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGA : 45045 vulgar: CbirOr102PNI 161 218 . KQ414804.1 44874 45045 + 136 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44875 45045 136 + . gene_id 3 ; sequence CbirOr102PNI ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44875 45045 . + . KQ414804.1 exonerate:protein2genome:local exon 44875 45045 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44875 45045 136 + . alignment_id 3 ; Query CbirOr102PNI ; Align 44875 162 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr91NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 79 -> 214 Target range: 36527 -> 36923 80 : LysLeuValIleMetTrpSerLysLysAlaAlaLeuAlaProIleLeuTyrMetIleAla : 99 ||||||:::... ! !... !||||||!.! !:!!:!! !...||| ! LysLeuIlePheThrIleHisThrSerLeuAlaLeuValPheLeuMetSerGlnIlePhe 36528 : AAACtgattttcacaattcacACGTCTCTAGCGCTAGTATTCTTAATGAGCCAAATATTC : 36585 100 : LysAspTrpLeuArgSerLysSerGluGluGluArgHisAsnMetIleArgCysAlaArg : 119 ! |||||| !..! !!! !!|||! !!!:||||||!..|||:!:!:! !|||!:! AspAspTrpAlaGluProIleProGluValAspArgHisThrMetLeuLysThrAlaLys 36586 : GACGACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACGATGCTGAAGACCGCGAAA : 36645 120 : IleProArgMetIleIleIleCysGlyPheValIleMetPheAlaSerPheIleLeuLeu : 139 ||| !||||||||| !||| ! !!! !:!!:!:! !!:!!.! .!.:!!||| ! IleSerArgMetIleSerIleValCysSerIleLeuThrTyrVal---MetValLeuAla 36646 : ATTAGTCGAATGATATCCATAGTCTGTTCTATCCTGACGTATGTC---ATGGTTTTGGCC : 36702 140 : PheIleLeuProCysPheGlyIleThrMetArgTyrIleThrAsnValThrAspProGly : 159 |||:!:! !! ! .!! !!! !!:!|||!:! !!! !:!!.!. !!!.!! !||| PheLeuSerLeuGlnIleTrpSerSerMetGlnAsnThrSerGluPheAsnValGlyGly 36703 : TTCTTGTCACTTCAAATTTGGAGCAGCATGCAAAACACCTCGGAGTTCAACGTAGGAGGA : 36762 160 : LysProLeuProLeuGlnThrTyrTyrPheTyrAspThrAspGluSerProTyrPheGlu : 179 !! !:!!||| .!! !:! |||||||||:!!:!!|||||| !!!:!||| LeuLeuIlePro------AlaThrPheProTyrAspThrAsnLysSerProAsnTyrGlu 36763 : CTACTTATCCCG------GCCACATTTCCATACGACACGAATAAAAGTCCTAATTACGAA : 36816 180 : LeuThrPheIleAlaGlnGlyPheThrLeuMetValSerAlaMetGlyTyrThrAlaIle : 199 :!!|||!:::!!!.!||| ! ! ! !:!!:!!||||||!!: !!|||:!!..!.!! IleThrTrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSerCysPhe 36817 : ATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTC : 36876 200 : AspSerLeuPheGlyLeuLeuValPheHisValCysGlyGlnLeu : 214 |||!!!!!! !!!.!:!!||||||!!.|||:!!|||||||||||| AspThrPheValAlaValLeuValLeuHisIleCysGlyGlnLeu 36877 : GATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTA : 36923 vulgar: CbirOr91NTE 79 214 . KQ414804.1 36527 36923 + 150 M 55 165 G 1 0 M 28 84 G 2 0 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36528 36923 150 + . gene_id 1 ; sequence CbirOr91NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36528 36923 . + . KQ414804.1 exonerate:protein2genome:local exon 36528 36923 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 36528 36923 150 + . alignment_id 1 ; Query CbirOr91NTE ; Align 36528 80 165 ; Align 36693 136 84 ; Align 36777 166 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr91NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 131 -> 218 Target range: 44787 -> 45045 132 : MetPheAlaSerPheIleLeuLeuPheIleLeuProCysPheGlyIleThrMetArgTyr : 151 !!:.!.::!||| :!:|||! ! !|||:!! ! ! ! !||| !:!:|||!:! IleIleSerSerThrValLeuCysHisIleValValIleThrTyrIlePheLeuArgPhe 44788 : ATAATAAGCAGCACAGTGTTATGTCACATTGTGGTCATCACTTATATATTTCTACGATTC : 44845 152 : IleThrAsnValThrAspProGlyLysProLeuProLeuGlnThrTyrTyrPheTyrAsp : 171 :!!|||!.. ! !..! |||! !|||! !!!!!::.!!|||!:! !|||||| LeuThrArgLysTyrSer---GlyThrArgLeuLeuPheArgAlaTyrPheProTyrAsp 44846 : CTCACCAGGAAGTACAGC---GGCACCAGACTACTCTTCCGTGCTTATTTCCCTTACGAC : 44902 172 : ThrAspGluSerProTyrPheGluLeuThrPheIleAlaGlnGlyPheThrLeuMetVal : 191 !:!|||! |||||| !!!:!|||!!!||| ! ||||||||| !.!..!! !.!. ! SerAspValSerProAsnTyrGluPheThrValIleAlaGlnIleIleAlaAlaPheTyr 44903 : AGCGATGTCAGTCCAAATTACGAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTAT : 44962 192 : SerAlaMetGlyTyrThrAlaIleAspSerLeuPheGlyLeuLeuValPheHisValCys : 211 :!!|||! !|||||||||:!!|||!!!!!!.!!! !:!!|||:!!.!.||||||||| AlaAlaThrThrTyrThrAlaValAspThrPheIleValMetLeuIleLeuHisValCys 44963 : GCAGCCACCACATACACAGCCGTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGT : 45022 212 : GlyGlnLeuGluAsnValLys : 218 |||||||||..!|||:!!!:! GlyGlnLeuSerAsnLeuArg 45023 : GGACAACTTTCGAATTTGAGA : 45045 vulgar: CbirOr91NTE 131 218 . KQ414804.1 44787 45045 + 139 M 26 78 G 1 0 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44788 45045 139 + . gene_id 2 ; sequence CbirOr91NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44788 45045 . + . KQ414804.1 exonerate:protein2genome:local exon 44788 45045 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 44788 45045 139 + . alignment_id 2 ; Query CbirOr91NTE ; Align 44788 132 78 ; Align 44866 159 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr91NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 7 -> 85 Target range: 30809 -> 31040 8 : AsnArgTyrSerLeuGluPheIleGlyLeuTrpProLysMetGluGluThrThrArgGlu : 27 ||||||!::!:!:!!|||.!.:!!|||:!!|||||| ||| !!:!! ! !!!: AsnArgTrpAsnMetGluLeuValGlyIleTrpPro------GluProSerArgSerAsp 30810 : AACCGTTGGAACATGGAACTGGTTGGAATTTGGCCA------GAACCGAGCAGATCTGAT : 30861 28 : LysLeuThrAlaAsnAlaArgValPheLeuLeuIleIleMetValThrPheValCysVal : 47 :!!! ! ! !!||| !!:!!.!!!.|||!!!|||.!!:::::: ||| ..! GlnArgTrpProAsnPheLysAlaLeuLeuPheIlePheValIleIlePhePheGlyThr 30862 : CAACGATGGCCGAATTTCAAGGCTTTGCTGTTCATTTTTGtgataatattttttggaaCC : 30921 48 : IleProCysIleHisSerLeuIleArgValTrpGlyAspLeuMetSerMetThrAspAsn : 67 !||| ! ! !:!|||:!! !:!!|||||||||||| ! !:!:|||!!:||| GlyProGlnSerValAsnLeuLeuPheIleTrpGlyAspLeuGlyLeuValThrGluAsn 30922 : GGACCTCAGAGCGTGAATCTACTTTTCATATGGGGAGACCTTGGATTGGTCACGGAAAAT : 30981 68 : LeuGln<->PheThrLeuProLeuValSerMetValMetLysLeuValIleMetTrp : 85 |||... !!.!:!!||| !:!!!:! :!!|||||||||:!!||| ||| LeuSerThrAlaAsnIleProGlyIleAsnAlaMetMetLysLeuIleIleAlaTrp 30982 : CTGTCCACGGCTAATATTCCCGGCATAAACGCCATGATGAAACTGATTATCGCCTGG : 31040 vulgar: CbirOr91NTE 7 85 . KQ414804.1 30809 31040 + 106 M 12 36 G 2 0 M 48 144 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 30810 31040 106 + . gene_id 3 ; sequence CbirOr91NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 30810 31040 . + . KQ414804.1 exonerate:protein2genome:local exon 30810 31040 . + . insertions 3 ; deletions 2 KQ414804.1 exonerate:protein2genome:local similarity 30810 31040 106 + . alignment_id 3 ; Query CbirOr91NTE ; Align 30810 8 36 ; Align 30846 22 144 ; Align 30993 70 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr96NC Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 160 -> 227 Target range: 44874 -> 45075 161 : LeuProLeuGlnThrTyrTyrPheTyrAspThrAspLysSerProTyrPheGluLeuThr : 180 |||! !!!!!::.!!|||!:! !||||||!:!||| |||||| !!!:!|||!!!||| LeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThr 44875 : CTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACA : 44932 181 : LeuValAlaGlnAlaLeuThrIleSerLeuGlyGlyIleThrTyrThrSerValAspAla : 200 :!!:!!|||||| !:!!.!! !! !! !!.!!.!! !|||||||||:!!||||||.!! ValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThr 44933 : GTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACT : 44992 201 : PheLeuGlyLeuThrIlePheHisIleSerGlyGlnLeuGluAsnPheArgTyrGlnLeu : 220 |||:!!! !:!! !|||.!.|||:!!!!!|||||||||..!|||!!.||| !!:!!!!! PheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArgAsnGluPhe 44993 : TTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGAAACGAATTC : 45052 221 : ProAsnLeuIleSerCysAsp : 227 !!!.||| !:!!|||||| GlyLysLeuGlnAlaCysAsp 45053 : GGTAAGCTTCAAGCATGCGAT : 45075 vulgar: CbirOr96NC 160 227 . KQ414804.1 44874 45075 + 146 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44875 45075 146 + . gene_id 1 ; sequence CbirOr96NC ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44875 45075 . + . KQ414804.1 exonerate:protein2genome:local exon 44875 45075 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44875 45075 146 + . alignment_id 1 ; Query CbirOr96NC ; Align 44875 161 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr92NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 161 -> 228 Target range: 44874 -> 45075 162 : LeuValLeuGlnAlaTyrTyrPheTyrAspThrAspProSerProGlnPheGluLeuThr : 181 |||:!!!!!!::||||||!:! !||||||!:!||| !||||||.!.!:!|||!!!||| LeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThr 44875 : CTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACA : 44932 182 : PheIlePheGlnAlaIleThrIlePheLeuAlaAlaThrSerTyrThrSerValAspAla : 201 ! ||| !||| !|||.!! !|||! !|||||||||!!!||||||:!!||||||.!! ValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThr 44933 : GTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACT : 44992 202 : LeuLeuGlyLeuValIleLeuHisThrCysGlyGlnLeuGluAsnPheLysTyrGlnLeu : 221 !!!:!!! !:!!:!!|||||||||..!||||||||||||..!|||!!.!:! !!:!!!!! PheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArgAsnGluPhe 44993 : TTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGAAACGAATTC : 45052 222 : AlaAsnIleAlaAlaSerGlu : 228 !.!!!.:!! !|||!!!!!: GlyLysLeuGlnAlaCysAsp 45053 : GGTAAGCTTCAAGCATGCGAT : 45075 vulgar: CbirOr92NTE 161 228 . KQ414804.1 44874 45075 + 164 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44875 45075 164 + . gene_id 1 ; sequence CbirOr92NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44875 45075 . + . KQ414804.1 exonerate:protein2genome:local exon 44875 45075 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44875 45075 164 + . alignment_id 1 ; Query CbirOr92NTE ; Align 44875 162 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr92NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 324 -> 387 Target range: 39974 -> 40241 325 : ValTyrGlnAlaIleTyrAsnLeuGluTrpTyrLysLeuGluAlaArgLysAlaArgAsn : 344 :!! !|||:!! !|||:!!! !.!.|||||| ! ||| ! !!!:! ! ||| !::: IleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHisAlaValSer 39975 : ATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCATGCTGTTTCG : 40032 345 : LeuValLeuLeuMetIleArgAlaSerGluProPheArgIleThrAlaGlyLysValIle : 364 ||||||:!!:!!!!: !||||||..!! ! !!|||!:!||||||||||||||| !!! ! LeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGlyLysPheSer 40033 : TTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGT : 40092 365 : ProLeuThrMetAlaThrPheCysSer >>>> Target Intron 1 >>>> LeuL : 375 |||!!!:!!:!:! ! !||| !:!! 78 bp :!!| ProPheSerLeuGluLeuPheAsnAla++ ++ValL 40093 : CCCTTTTCTCTCGAGCTGTTTAACGCTgt.........................agGTTT : 40203 376 : euLysThrThrAlaGlyTyrIleSerValLeuLeuAla : 387 ||||||||:!!|||||||||:!!||||||||||||||| euLysThrSerAlaGlyTyrLeuSerValLeuLeuAla 40204 : TAAAAACGTCTGCTGGATATCTTTCCGTGTTGCTAGCT : 40241 vulgar: CbirOr92NTE 324 387 . KQ414804.1 39974 40241 + 130 M 49 147 5 0 2 I 0 74 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39975 40241 130 + . gene_id 2 ; sequence CbirOr92NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39975 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39975 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40241 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40241 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39975 40241 130 + . alignment_id 2 ; Query CbirOr92NTE ; Align 39975 325 147 ; Align 40200 374 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr92NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 89 -> 228 Target range: 31119 -> 31533 90 : AlaLeuLeuSerIleLeuLysMetMetAlaLysAspTrpIleValPheLysIleAspThr : 109 |||.!! ! !!:!!:!!||| .!. ! ! ||||||! !..!! !:!! AlaPheLysProValIleLysSerPheTyrAspAspTrpLysThrSerArgThrLysGlu 31120 : gcttTCAAGCCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACcaaggag : 31177 110 : GlnArgAspValMetMetLysTrpAlaArgThrAlaArgValIleAlaIleCysGlyTyr : 129 :::::::::..!|||:!!||| ! |||!:! !|||!:! !|||:!!||| !!! ! GluLysGluThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIle---TrpCys 31178 : gagaaggagacCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATC---TGGTGC : 31234 130 : IleValIleGlyPheGlyIleIleValValIleIleProProTyrPheGlyIleProPhe : 149 !|||:!! !!!. !!!::!!..!||| !:!! !! ! !!||| !!:! SerValLeuThrLeuThrMetValThrValTyrLeuSerLeuArgAlaTrpIleIleTyr 31235 : TCAGTATTAACCTTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATCTAC : 31294 150 : ArgLysLeuSerAsnLeuThrAspArgAspLysProLeuValLeuGlnAlaTyrTyrPhe : 169 !:! !!!! ! ! ! !:!|||:::! !|||:!!! !! !.!|||!:! ! GlnLeuAspArgAlaAsnGlnLysGlnAspArgLeuLeuLeuTyrProGlyTyrPhePro 31295 : CAGCTTGATAGGGCAAACCAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTATTTTCCC : 31354 170 : TyrAspThrAspProSerProGlnPheGluLeuThrPheIlePheGlnAlaIleThrIle : 189 !:!|||! ! !|||! ! ! !.!. !! !||| !.!! !|||!.!:!!.!! PheAspIleArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeuAlaAla 31355 : TTCGATATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCAGCG : 31414 190 : PheLeuAlaAlaThrSerTyrThrSerValAspAlaLeuLeuGlyLeuValIleLeuHis : 209 !:!! !|||!.!! !|||||||||!!!||||||.!!!!!:!!!.!:!!:!!|||:!!||| TyrSerAlaValIleSerTyrThrThrValAspThrPheIleAlaMetLeuIleMetHis 31415 : TATTCCGCTGTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATAATGCAC : 31474 210 : ThrCysGlyGlnLeuGluAsnPheLysTyrGlnLeuAlaAsnIleAlaAlaSerGlu : 228 ! !|||||||||!!!|||! .!.!:! ! :!!||| !!..:!: !! !..!||| IleCysGlyGlnPheGluIleLeuArgGlnLysLeuArgArgLeuMetAspAspGlu 31475 : ATATGCGGACAATTTGAGATACTGAGACAGAAATTACGAAGGCTGATGGATGACGAG : 31533 vulgar: CbirOr92NTE 89 228 . KQ414804.1 31119 31533 + 120 M 37 111 G 1 0 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31120 31533 120 + . gene_id 3 ; sequence CbirOr92NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31120 31533 . + . KQ414804.1 exonerate:protein2genome:local exon 31120 31533 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 31120 31533 120 + . alignment_id 3 ; Query CbirOr92NTE ; Align 31120 90 111 ; Align 31231 128 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr89NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 327 -> 389 Target range: 39983 -> 40247 328 : AlaAlaTyrGluTyrGluTrpTyrLysLeuGluProLysLysAlaLysValLeuValLeu : 347 :!!||||||!!:! !.!.|||||| ! ||| !|||||| ! ||| !||||||:!! SerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIle 39984 : TCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATC : 40041 348 : LeuMetIleArgThrSerLysProLeuTyrIleThrAlaGlyLysIlePheProMetThr : 367 :!!!!: !|||.!!..! ! !!!!! ! |||||||||||||||.!! !|||.!.:!! ValIleCysArgAlaGlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSer 40042 : GTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCT : 40101 368 : MetSerThrPheCysAsn >>>> Target Intron 1 >>>> IleIleLysThrS : 378 :!:..! !||| ! ! 78 bp :!!:!!||||||| LeuGluLeuPheAsnAla++ ++ValLeuLysThrS 40102 : CTCGAGCTGTTTAACGCTgt.........................agGTTTTAAAAACGT : 40212 379 : erAlaGlyTyrValSerValLeuLeuAlaMetGln : 389 |||||||||||:!!||||||||||||||||||:!! erAlaGlyTyrLeuSerValLeuLeuAlaMetLys 40213 : CTGCTGGATATCTTTCCGTGTTGCTAGCTATGAAA : 40247 vulgar: CbirOr89NTE 327 389 . KQ414804.1 39983 40247 + 134 M 46 138 5 0 2 I 0 74 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39984 40247 134 + . gene_id 1 ; sequence CbirOr89NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39984 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39984 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40247 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40247 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39984 40247 134 + . alignment_id 1 ; Query CbirOr89NTE ; Align 39984 328 138 ; Align 40200 374 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr119PC Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 285 -> 367 Target range: 51798 -> 52044 286 : TyrAlaMetLeuLeuLysSerLeuPhePheTyrIleAlaIleThrLeuGluAlaPheIle : 305 |||..! :!! !:!!!!!|||! ! !! ! :!! ! !!.!:!!.!..!!|||||| TyrCysTyrValGlyGluArgLeuSerValGluValAsnAspAsnValAsnThrPheIle 51799 : TATTGTTACGTGGGTGAAAGGCTTTCCGTTGAGGTAAATGATAATGTTAATACTTTTATT : 51856 306 : PheCysPheAlaGlyGluTyrLeuSerAsnLysSerLysSerValAlaAsnAlaAlaTyr : 325 !!! ::::::...::: ::!||| ..!:!!||||||||||||||| AlaSerCysHis***LysPhePheThrPheGlnSerValGluIleAlaAsnAlaAlaTyr 51857 : GCAAGTTgtcattaaaaattcttcacttttcaGAGCGTTGAAATAGCTAACGCGGCATAC : 51916 326 : GluValPheTrpTyrAsnValLysProSerGluSerArgMetLeuLeuIleLeuIleLeu : 345 !!: ! |||||||||:!!...|||!.!.!.:!!!:!:!!|||||||||:!!!!:! ! AspSerGluTrpTyrAsnLeuSerProLysAsnAlaLysLeuLeuLeuIleIleMetArg 51917 : GATTCTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTGCTACTAATTATCATGCGA : 51976 346 : ArgSerGlnLysArgLeuThrLeuThrIleGlyLysPheAsnAspLeuSerLeuGlnVal : 365 |||:!!::! !! !||| !:!!||| !|||!:!||| ! !!!!!!!|||..!:!! ArgAlaArgLeuProLeuGlnIleThrAlaGlyArgPheAlaThrPheThrLeuMetLeu 51977 : CGAGCCAGGTTACCTCTACAAATCACTGCAGGTAGATTTGCTACTTTCACTCTGATGCTG : 52036 366 : PheAla : 367 !:!:!! TyrSer 52037 : TATTCA : 52044 vulgar: CbirOr119PC 285 367 . KQ414804.1 51798 52044 + 113 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51799 52044 113 + . gene_id 1 ; sequence CbirOr119PC ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 51799 52044 . + . KQ414804.1 exonerate:protein2genome:local exon 51799 52044 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51799 52044 113 + . alignment_id 1 ; Query CbirOr119PC ; Align 51799 286 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr99NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 325 -> 385 Target range: 39980 -> 40238 326 : GluAlaIleCysAspLeuAspTrpTyrLysLeuAspSerArgGlnSerArgAsnLeuIle : 345 :!!:!! !! !|||! !:!!|||||| ! ||| !!!:!!!.:!! !:::|||:!! GlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHisAlaValSerLeuVal 39981 : CAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTT : 40038 346 : LeuLeuMetIleArgAlaSerGluProPheArgIleThrAlaGlyLysValIleProLeu : 365 :!!:!!!!: !||||||..!! ! !!|||!:!||||||||||||||| !!! !|||!!! IleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGlyLysPheSerProPhe 40039 : ATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTT : 40098 366 : ThrMetThrThrPheCysSer >>>> Target Intron 1 >>>> LeuLeuLysT : 376 :!!:!: ! !||| !:!! 78 bp :!!||||||| SerLeuGluLeuPheAsnAla++ ++ValLeuLysT 40099 : TCTCTCGAGCTGTTTAACGCTgt.........................agGTTTTAAAAA : 40209 377 : hrSerAlaGlyTyrIleSerPheLeuLeu : 385 ||||||||||||||:!!||| ! |||||| hrSerAlaGlyTyrLeuSerValLeuLeu 40210 : CGTCTGCTGGATATCTTTCCGTGTTGCTA : 40238 vulgar: CbirOr99NTE 325 385 . KQ414804.1 39980 40238 + 115 M 47 141 5 0 2 I 0 74 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39981 40238 115 + . gene_id 1 ; sequence CbirOr99NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39981 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39981 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40238 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40238 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39981 40238 115 + . alignment_id 1 ; Query CbirOr99NTE ; Align 39981 326 141 ; Align 40200 373 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr105NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 176 Query range: 93 -> 224 Target range: 36569 -> 36953 94 : LeuLeuAsnMetIleLysAspAspTrpLeuArgProLysProLeuThrGluArgAsnVal : 113 |||:!!!:!...||| ||||||||| !..!|||! ||| !..!!!:|||:!!..! LeuMetSerGlnIlePheAspAspTrpAlaGluProIleProGluValAspArgHisThr 36570 : TTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACG : 36627 114 : MetIleLysGlnAlaArgIleAlaArgThrLeuThrIlePheGlyTyrPheValThrGln : 133 |||:!:||| |||!:!|||::!|||! !:!!:!!||| !! !!! !.!!:!!||| ! MetLeuLysThrAlaLysIleSerArgMetIleSerIleValCysSerIleLeuThrTyr 36628 : ATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTCTGTTCTATCCTGACGTAT : 36687 134 : LeuThrAlaIleThrValLeuPheLeuProLeuPheGlyIleSerMetThrTyrArgAsn : 153 :!!! !!.!:!:.!! !!|||! |||! !:!!!:: |||! ! ! ! !.!!.! ValMetValLeuAlaPheLeuSerLeuGlnIleTrp------SerSerMetGlnAsnThr 36688 : GTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGG------AGCAGCATGCAAAACACC : 36741 154 : AsnLysThrAspThrAspLysLeuLeuProValGlnSerTyrTyrLeuTyrAsnValSer : 173 ::::!! !:!!..!! !|||||| :!!! !:!! !:!! !|||:!!..!!:! SerGluPheAsnValGlyGlyLeuLeu---IleProAlaThrPheProTyrAspThrAsn 36742 : TCGGAGTTCAACGTAGGAGGACTACTT---ATCCCGGCCACATTTCCATACGACACGAAT : 36798 174 : LysSerProLeuTyrGluValThrPheValLeuGlnSerIleSerValMetThrAlaGly : 193 ||||||||| !||||||:!!|||!:::!! !|||! !:!:.!!..!:!! !::!!.! LysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrValLeuSerAla 36799 : AAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCG : 36858 194 : ThrThrTyrSerGlyMetAspThrTyrMetSerLeuLeuValPheHisValCysGlyGln : 213 ! ! !|||||| !!.!.||||||!:!:!::!!:!!||||||!!.|||:!!||||||||| IleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHisIleCysGlyGln 36859 : ATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAA : 36918 214 : LeuGluAsnLeuArgGlyArgIleArgAsnLeu : 224 ||| !|||||| ! !:!!..!|||||| LeuThrValLeuArgIleAlaLeuGluAsnLeu 36919 : TTAACTGTTCTCCGCATTGCCCTCGAGAATCTT : 36953 vulgar: CbirOr105NTE 93 224 . KQ414804.1 36569 36953 + 176 M 52 156 G 2 0 M 15 45 G 1 0 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36570 36953 176 + . gene_id 1 ; sequence CbirOr105NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36570 36953 . + . KQ414804.1 exonerate:protein2genome:local exon 36570 36953 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 36570 36953 176 + . alignment_id 1 ; Query CbirOr105NTE ; Align 36570 94 156 ; Align 36726 148 45 ; Align 36771 164 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr105NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 161 -> 224 Target range: 44874 -> 45063 162 : LeuProValGlnSerTyrTyrLeuTyrAsnValSerLysSerProLeuTyrGluValThr : 181 |||! ! !!!:::!!|||!:!! !|||:!! !..! |||||| !|||||| !!||| LeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThr 44875 : CTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACA : 44932 182 : PheValLeuGlnSerIleSerValMetThrAlaGlyThrThrTyrSerGlyMetAspThr : 201 ! :!! !|||! !|||:!!!.!.!. !|||!.!|||||||||!!!!.!:!:|||||| ValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThr 44933 : GTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACT : 44992 202 : TyrMetSerLeuLeuValPheHisValCysGlyGlnLeuGluAsnLeuArgGlyArgIle : 221 !:!!!: !:!!|||:!!.!.||||||||||||||||||..!|||||||||..!..!.!! PheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArgAsnGluPhe 44993 : TTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGAAACGAATTC : 45052 222 : ArgAsnLeu : 224 !!!!.||| GlyLysLeu 45053 : GGTAAGCTT : 45063 vulgar: CbirOr105NTE 161 224 . KQ414804.1 44874 45063 + 142 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44875 45063 142 + . gene_id 2 ; sequence CbirOr105NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44875 45063 . + . KQ414804.1 exonerate:protein2genome:local exon 44875 45063 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44875 45063 142 + . alignment_id 2 ; Query CbirOr105NTE ; Align 44875 162 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr105NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 328 -> 384 Target range: 34411 -> 34662 329 : GlnTyrGluTrpTyrGluLeuLysProLysGlnAlaLysAspLeuLeuAsnIleMetMet : 348 :!!! .!.||||||.!.:!!..!||| !:!!|||||| !|||||| !|||||| GluSerAsnTrpTyrAsnValSerProProGluAlaLysCysLeuLeuPheIleMetHis 34412 : GAGTCAAACTGGTACAACGTCTCACCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCAC : 34469 349 : GlnThrArgArgProPheAsnLeuThrAlaGlyLysLeuPheProMetThrIleAlaMet : 368 ::!||| !||||||.!! !|||||||||||||||!!! ! !!.!.:!!!!:! !||| ArgThrAlaArgProLeuCysLeuThrAlaGlyLysPheSerThrPheSerMetGluMet 34470 : AGAACCGCTCGTCCACTTTGCTTGACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATG : 34529 369 : LeuCysAsn >>>> Target Intron 1 >>>> LeuLeuLysThrSerGlyGlyT : 379 !!! !!!.! 83 bp :::|||||||||:!! !|||| PheSerThr++ ++IleLeuLysThrAlaMetGlyT 34530 : TTCAGTACTgt.........................agattcTGAAAACAGCAATGGGAT : 34645 380 : yrIleSerValLeuLeu : 384 ||:!!|||||||||||| yrLeuSerValLeuLeu 34646 : ATCTTTCAGTTCTCCTC : 34662 vulgar: CbirOr105NTE 328 384 . KQ414804.1 34411 34662 + 115 M 43 129 5 0 2 I 0 79 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34412 34662 115 + . gene_id 3 ; sequence CbirOr105NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34412 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34412 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34662 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34662 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34412 34662 115 + . alignment_id 3 ; Query CbirOr105NTE ; Align 34412 329 129 ; Align 34624 372 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr106NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 219 Query range: 2 -> 225 Target range: 35909 -> 36953 3 : GluTrpAlaThrGluLeuAsnArgIleAsnLeuThrLeuLeuGlyLeuTrpProGluAsn : 22 !!:!::|||! !! !! !||||||.!!!:!|||:!!:!!||||||:!!||||||||| AspPheAlaMetGlyTrpAsnArgPheSerLeuSerValLeuGlyValTrpProGluPro 35910 : GATTTTGCTATGGGATGGAATCGTTTCAGTTTATCTGTACTTGGCGTGTGGCCAGAACCG : 35967 23 : AsnGluThrLysGlnLysLysLeuMetSerAspIleArgValIleLeuIlePheAsnIle : 42 !..:!!! !....!. !..!! !.!.:!!..!! ! !:!!.!!! !.!! !.!:!: ArgLysMetSerAsnLeuSerArgPheAlaSerAsnPheIlePheTrpPheThrThrLeu 35968 : AGAAAGATGTCTAACCTGTCACGATTCGCGTCTAACTTTATATTCTGGTTCACGACTTTG : 36027 43 : IlePheTrpSerCysIle<->IleProThrLeuHisSerLeuLeuLysIleTyrAspAsp : 61 ||| !! !||| !||| !:!! !|||:!! ::: IleThrValValPheIleCysAlaProGlnMetThrHisLeuValLeuLysSerThrAsn 36028 : ATAACGGTTGTCTTCATATGCGCTCCCCAAATGACGCATTTGGTAttaaaatcgacgaat : 36087 62 : IleMetSerValIleAspAsnLeuGlnTyrThrLeuProPheLeuIleAlaValIleLys : 81 ::: ..!||||||!!:||||||..! !!.!:!!|||.!.|||.!!:!!:!! !||| LeuAspGluValIleGluAsnLeuSerValAsnIleProMetLeuPheSerLeuGlyLys 36088 : ttgGACGAGGTGATAGAGAATCTGTCGGTCAACATACCGATGCTCTTCTCATTGGGCAAG : 36147 82 : LeuPheIleIleTrpGlnLysLysTyr{G} >>>> Target Intron 1 >>>> { : 91 ! !.!!|||:!: ! ! :::!:! ! {!} 381 bp { GlnIleIleLeuArgTyrArgArgLys{A}++ ++{ 36148 : CAAATCATTCTGCGTTATCGTAGAAAA{G}gt.........................ag{ : 36559 92 : lu}ValLeuProLeuLeuAsnMetIleLysAspAspTrpLeuArgProLysThrSerLys : 110 !}:!!:!! !|||:!!!:!...||| ||||||||| !..!|||! !!..! ! la}LeuValPheLeuMetSerGlnIlePheAspAspTrpAlaGluProIleProGluVal 36560 : CG}CTAGTATTCTTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTG : 36615 111 : GluArgAsnValMetLeuLysGlnAlaArgIleAlaArgIlePheThrIlePheGlyPhe : 130 !!:|||:!!..!||||||||| |||!:!|||::!|||!!:.!.:!!||| !! !!! ! AspArgHisThrMetLeuLysThrAlaLysIleSerArgMetIleSerIleValCysSer 36616 : GATCGCCACACGATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTCTGTTCT : 36675 131 : LeuLeuIleGlnIleSerAlaIleIleValLeuPheLeuProLeuPheGlyIleSerMet : 150 :!!|||! ! :!!! !!.!:!: ! !!|||! |||! !:!!!::.!! |||||| IleLeuThrTyrValMetValLeuAlaPheLeuSerLeuGlnIleTrpSer---SerMet 36676 : ATCCTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGC---AGCATG : 36732 151 : ArgTyrThrThrAsnArgThrAspProGlyArgMetLeuProLeuGlnThrTyrTyrLeu : 170 !:! !!|||:!!.!. !!.!! !|||! !:!::!!||| .!! !:!! ! GlnAsnThrSerGluPheAsnValGlyGlyLeuLeuIlePro------AlaThrPhePro 36733 : CAAAACACCTCGGAGTTCAACGTAGGAGGACTACTTATCCCG------GCCACATTTCCA : 36786 171 : TyrAsnValAsnSerSerProLeuTyrGluIleThrPhePheLeuGlnSerPheSerVal : 190 |||:!!..!|||!.!|||||| !||||||||||||!::.!! !|||! ! ! .!!..! TyrAspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThr 36787 : TACGACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACA : 36846 191 : MetAlaGlySerThrMetTyrSerGlyThrAspThrPheMetSerValIleValPheHis : 210 :!! !.!!:!!! ! |||||| !! !|||||||||:!::!!|||:!!|||!!.||| ValLeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHis 36847 : GTGTTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACAC : 36906 211 : ValCysGlyGlnLeuGluAsnLeuLysThrArgIleArgThrLeu : 225 :!!|||||||||||| !|||:::! ! !:!!..!!.!||| IleCysGlyGlnLeuThrValLeuArgIleAlaLeuGluAsnLeu 36907 : ATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTCGAGAATCTT : 36953 vulgar: CbirOr106NTE 2 225 . KQ414804.1 35909 36953 + 219 M 46 138 G 0 3 M 42 126 S 0 1 5 0 2 I 0 377 3 0 2 S 1 2 M 56 168 G 1 0 M 16 48 G 2 0 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 35910 36953 219 + . gene_id 1 ; sequence CbirOr106NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 35910 36177 . + . KQ414804.1 exonerate:protein2genome:local exon 35910 36177 . + . insertions 3 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 36178 36179 . + . intron_id 1 ; splice_site "gt" KQ414804.1 exonerate:protein2genome:local intron 36178 36558 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 36557 36558 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 36559 36953 . + . KQ414804.1 exonerate:protein2genome:local exon 36559 36953 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 35910 36953 219 + . alignment_id 1 ; Query CbirOr106NTE ; Align 35910 3 138 ; Align 36051 49 126 ; Align 36561 92 168 ; Align 36729 149 48 ; Align 36777 167 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr106NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 135 -> 225 Target range: 44796 -> 45063 136 : SerAlaIleIleValLeuPheLeuProLeuPheGlyIleSerMetArgTyrThrThrAsn : 155 |||.!!:!::!! !! !.!!:!! !:!! ! !|||! !:!:|||!:! !|||!.. SerThrValLeuCysHisIleValValIleThrTyrIlePheLeuArgPheLeuThrArg 44797 : AGCACAGTGTTATGTCACATTGTGGTCATCACTTATATATTTCTACGATTCCTCACCAGG : 44854 156 : ArgThrAspProGlyArgMetLeuProLeuGlnThrTyrTyrLeuTyrAsnValAsnSer : 175 !:! !..! ! !|||:!:||| !!!!::.!!|||!:!! !|||:!! !:!! ! LysTyrSerGlyThrArgLeuLeu---PheArgAlaTyrPheProTyrAspSerAspVal 44855 : AAGTACAGCGGCACCAGACTACTC---TTCCGTGCTTATTTCCCTTACGACAGCGATGTC : 44911 176 : SerProLeuTyrGluIleThrPhePheLeuGlnSerPheSerValMetAlaGlySerThr : 195 |||||| !||||||.!!||| ! .!! !|||! !.!.:!!!.!.!. !!.!:!!||| SerProAsnTyrGluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThr 44912 : AGTCCAAATTACGAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACC : 44971 196 : MetTyrSerGlyThrAspThrPheMetSerValIleValPheHisValCysGlyGlnLeu : 215 ! |||!!!!.!..!|||||||||!!: !:!!:!!:!!.!.|||||||||||||||||| ThrTyrThrAlaValAspThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeu 44972 : ACATACACAGCCGTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTT : 45031 216 : GluAsnLeuLysThrArgIleArgThrLeu : 225 ..!||||||!:!!.!..!.!! !!! !||| SerAsnLeuArgAsnGluPheGlyLysLeu 45032 : TCGAATTTGAGAAACGAATTCGGTAAGCTT : 45063 vulgar: CbirOr106NTE 135 225 . KQ414804.1 44796 45063 + 128 M 28 84 G 1 0 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44797 45063 128 + . gene_id 2 ; sequence CbirOr106NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44797 45063 . + . KQ414804.1 exonerate:protein2genome:local exon 44797 45063 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 44797 45063 128 + . alignment_id 2 ; Query CbirOr106NTE ; Align 44797 136 84 ; Align 44881 165 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr106NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 317 -> 385 Target range: 34375 -> 34662 318 : ValIleGlnPheAspGlyIleTyrGluAlaValCysGlnTyrGluTrpTyrLysLeuLys : 337 :!!.!!||| ! ! !!!: !.!.:!!!.!! !:!!! .!.||||||!!.:!!..! IlePheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSer 34376 : ATATTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCA : 34433 338 : ProLysGlnAlaLysAspLeuMetAsnIleMetMetGlnThrLysArgProLeuAsnLeu : 357 ||| !:!!|||||| !|||:!: !|||||| ::!||| ||||||||| !||| ProProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeu 34434 : CCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTG : 34493 358 : ThrAlaGlyLysLeuPheProMetThrIleAlaMetLeuCysAsn >>>> Target I : 373 ||||||||||||!!! ! !!.!.:!!!!:! !|||!!! !!!.! 83 ThrAlaGlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34494 : ACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt............. : 34543 374 : ntron 1 >>>> LeuLeuLysThrSerGlyGlyTyrIleSerValLeuLeu : 385 bp :::|||||||||:!! !||||||:!!|||||||||||| ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeu 34544 : ............agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTC : 34662 vulgar: CbirOr106NTE 317 385 . KQ414804.1 34375 34662 + 117 M 55 165 5 0 2 I 0 79 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34376 34662 117 + . gene_id 3 ; sequence CbirOr106NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34376 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34376 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34662 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34662 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34376 34662 117 + . alignment_id 3 ; Query CbirOr106NTE ; Align 34376 318 165 ; Align 34624 373 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr98NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 212 Query range: 3 -> 225 Target range: 30797 -> 31524 4 : AlaValGluLeuAsnArgPheGlyLeuGluLeuIleGlyLeuTrpProLysThrAsnGlu : 23 |||:!!! !! !||||||!::..!:!!||||||:!!|||:!!||||||:!! !!!:!..! AlaLeuGlyTrpAsnArgTrpAsnMetGluLeuValGlyIleTrpProGluProSerArg 30798 : GCACTTGGATGGAACCGTTGGAACATGGAACTGGTTGGAATTTGGCCAGAACCGAGCAGA : 30855 24 : LeuAlaLysGluArgPheTrpSerAspPheArgValGlyPheIlePheIleMetValThr : 43 ...!!:!:! ||| !!:!!|||!:!!.! !.!..!!.!!.!!:::::: ------SerAspGlnArgTrpProAsnPheLysAlaLeuLeuPheIlePheValIleIle 30856 : ------TCTGATCAACGATGGCCGAATTTCAAGGCTTTGCTGTTCATTTTTGtgataata : 30909 44 : PheValSerGlyIleProLeuValCysAlaLeuIleArgValTrpGlyAspMetIleLeu : 63 ||| ... ! !|||! ! ! !|||:!! !:!!|||||||||:!: !||| PhePheGlyThrGlyProGlnSerValAsnLeuLeuPheIleTrpGlyAspLeuGlyLeu 30910 : ttttttggaaCCGGACCTCAGAGCGTGAATCTACTTTTCATATGGGGAGACCTTGGATTG : 30969 64 : MetIleAspAsnLeuGln<->IleThrLeuProLeuLeuValValSerPheLysLeuIle : 82 :!:! !!:||||||... !!.!:!!||| !:!! !!.!! !.!.||||||||| ValThrGluAsnLeuSerThrAlaAsnIleProGlyIleAsnAlaMetMetLysLeuIle 30970 : GTCACGGAAAATCTGTCCACGGCTAATATTCCCGGCATAAACGCCATGATGAAACTGATT : 31029 83 : IleMetArgTrpLysArgThr{V} >>>> Target Intron 1 >>>> {al}Leu : 91 ||| !! ! ||| !{!} 67 bp {.!}.!! IleAlaTrpHisHisArgAsp{A}++ ++{la}Phe 31030 : ATCGCCTGGCATCACAGAGAT{G}gt.........................ag{ct}tTC : 31123 92 : LeuSerMetValLysMetMetAlaGluAspTrpMetThrSerLysLeuAspAlaGluArg : 111 ! !!:!::!!||| .!. !!!:||||||! ||||||!:! |||::: LysProValIleLysSerPheTyrAspAspTrpLysThrSerArgThrLysGluGluLys 31124 : AAGCCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACcaaggaggagaag : 31183 112 : AsnValMetIleLysHisAlaArgValAlaArgLeuIleValIleCysGlyTyrValLeu : 131 .....!|||:!:|||...|||!:! !!|||!:!! !||| !|||!! !!! |||||| GluThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIleTrpCysSerValLeu 31184 : gagacCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGGTGCTCAGTATTA : 31243 132 : MetValLeuAlaPheSerIleLeuIleIleLeuProCysPheGlyLeuHisIleArgHis : 151 ! :!! ! ! !!!!!:!!! !:!!! !|||! !...!:: !:!!:!! ! ! !! ThrLeuThrMetValThrValTyrLeuSerLeuArgAlaTrpIleIleTyrGlnLeuAsp 31244 : ACCTTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATCTACCAGCTTGAT : 31303 152 : LeuThrAsnLeuThrAspArgGlyLysProLeuProLeuGlnThrTyrTyrPheTyrAsp : 171 !.!!||| ! ! !:!! !:::! !|||! !! !! !|||!:! !!:!||| ArgAlaAsn---GlnLysGlnAspArgLeuLeuLeuTyrProGlyTyrPheProPheAsp 31304 : AGGGCAAAC---CAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTATTTTCCCTTCGAT : 31360 172 : ThrAspLysSerProGlnPheGlnValThrTyrPheLeuGlnAlaIleAlaIlePheLeu : 191 ! ! ! !! ! ! !.!.! ! !||| !!||| !|||!.!:!!||| !:!! ! IleArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeuAlaAlaTyrSer 31361 : ATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCAGCGTATTCC : 31420 192 : ThrAlaValThrTyrThrSerValAspAlaPheLeuGlyValThrIlePheHisIleCys : 211 .!!!.!:!!!:!||||||!!!||||||.!!|||:!!!.!:!! !|||.!.||||||||| AlaValIleSerTyrThrThrValAspThrPheIleAlaMetLeuIleMetHisIleCys 31421 : GCTGTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATAATGCACATATGC : 31480 212 : GlyGlnLeuGluAsnPheArgHisArgLeuThrAsnLeuIle : 225 ||||||!!!|||! .!.|||!!.!:!||| !!..|||!!: GlyGlnPheGluIleLeuArgGlnLysLeuArgArgLeuMet 31481 : GGACAATTTGAGATACTGAGACAGAAATTACGAAGGCTGATG : 31524 vulgar: CbirOr98NTE 3 225 . KQ414804.1 30797 31524 + 212 M 20 60 G 2 0 M 44 132 G 0 3 M 20 60 S 0 1 5 0 2 I 0 63 3 0 2 S 1 2 M 64 192 G 1 0 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 30798 31524 212 + . gene_id 1 ; sequence CbirOr98NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 30798 31053 . + . KQ414804.1 exonerate:protein2genome:local exon 30798 31053 . + . insertions 3 ; deletions 2 KQ414804.1 exonerate:protein2genome:local splice5 31054 31055 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 31054 31120 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 31119 31120 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 31121 31524 . + . KQ414804.1 exonerate:protein2genome:local exon 31121 31524 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 30798 31524 212 + . alignment_id 1 ; Query CbirOr98NTE ; Align 30798 4 60 ; Align 30858 26 132 ; Align 30993 70 60 ; Align 31123 91 192 ; Align 31315 156 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr98NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 158 -> 224 Target range: 44865 -> 45063 159 : GlyLysProLeuProLeuGlnThrTyrTyrPheTyrAspThrAspLysSerProGlnPhe : 178 |||! !|||! !!!!!::.!!|||!:! !||||||!:!||| ||||||.!.!:! GlyThrArgLeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyr 44866 : GGCACCAGACTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTAC : 44923 179 : GlnValThrTyrPheLeuGlnAlaIleAlaIlePheLeuThrAlaValThrTyrThrSer : 198 :!! !!||| .!! !||| !|||||| !|||! !.!!|||..!|||||||||:!! GluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAla 44924 : GAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCC : 44983 199 : ValAspAlaPheLeuGlyValThrIlePheHisIleCysGlyGlnLeuGluAsnPheArg : 218 ||||||.!!|||:!!! !:!! !|||.!.|||:!!||||||||||||..!|||!!.||| ValAspThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArg 44984 : GTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGA : 45043 219 : HisArgLeuThrAsnLeu : 224 :!!..!!!! !!!.||| AsnGluPheGlyLysLeu 45044 : AACGAATTCGGTAAGCTT : 45063 vulgar: CbirOr98NTE 158 224 . KQ414804.1 44865 45063 + 153 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44866 45063 153 + . gene_id 2 ; sequence CbirOr98NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44866 45063 . + . KQ414804.1 exonerate:protein2genome:local exon 44866 45063 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44866 45063 153 + . alignment_id 2 ; Query CbirOr98NTE ; Align 44866 159 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr98NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 79 -> 224 Target range: 36527 -> 36953 80 : LysLeuIleIleMetArgTrpLysArgThrValLeuLeuSerMetValLysMetMetAla : 99 |||||||||... ! ! ! !!.!|||:!!! !:!::!!!.....!!: ! LysLeuIlePheThrIleHisThrSerLeuAlaLeuValPheLeuMetSerGlnIlePhe 36528 : AAACtgattttcacaattcacACGTCTCTAGCGCTAGTATTCTTAATGAGCCAAATATTC : 36585 100 : GluAspTrpMetThrSerLysLeuAspAlaGluArgAsnValMetIleLysHisAlaArg : 119 !!:|||||| ! ! !!! ! !!!:!.!!!:|||:!!..!|||:!:||| !|||!:! AspAspTrpAlaGluProIleProGluValAspArgHisThrMetLeuLysThrAlaLys 36586 : GACGACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACGATGCTGAAGACCGCGAAA : 36645 120 : ValAlaArgLeuIleValIleCysGlyTyrValLeuMetValLeuAlaPheSerIleLeu : 139 :!!::!|||:!!||| !||| ! !!! !:!!|||! ! !:!! ! !!! ! !!!! IleSerArgMetIleSerIleValCysSerIleLeuThrTyrValMetValLeuAlaPhe 36646 : ATTAGTCGAATGATATCCATAGTCTGTTCTATCCTGACGTATGTCATGGTTTTGGCCTTC : 36705 140 : IleIleLeuProCysPheGlyLeuHisIleArgHisLeuThrAsnLeuThrAspArgGly : 159 :!: !|||! ! !!::.!! !!!:!:!:!! !:!!.!.!!!!.!! !!||| LeuSerLeuGlnIleTrpSer---SerMetGlnAsnThrSerGluPheAsnValGlyGly 36706 : TTGTCACTTCAAATTTGGAGC---AGCATGCAAAACACCTCGGAGTTCAACGTAGGAGGA : 36762 160 : LysProLeuProLeuGlnThrTyrTyrPheTyrAspThrAspLysSerProGlnPheGln : 179 !! !:!!||| .!! !:! |||||||||:!!|||||||||.!.!:!:!! LeuLeuIlePro------AlaThrPheProTyrAspThrAsnLysSerProAsnTyrGlu 36763 : CTACTTATCCCG------GCCACATTTCCATACGACACGAATAAAAGTCCTAATTACGAA : 36816 180 : ValThrTyrPheLeuGlnAlaIleAlaIlePheLeuThrAlaValThrTyrThrSerVal : 199 :!!|||!::.!! !||| !:!:!.!! ! ! |||!:!|||:!! !|||:!!!!! !! IleThrTrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSerCysPhe 36817 : ATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTC : 36876 200 : AspAlaPheLeuGlyValThrIlePheHisIleCysGlyGlnLeuGluAsnPheArgHis : 219 |||.!!|||:!!!.!||| !:!:!!.|||||||||||||||||| !.!!||| ! AspThrPheValAlaValLeuValLeuHisIleCysGlyGlnLeuThrValLeuArgIle 36877 : GATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACTGTTCTCCGCATT : 36936 220 : ArgLeuThrAsnLeu : 224 !||| !|||||| AlaLeuGluAsnLeu 36937 : GCCCTCGAGAATCTT : 36953 vulgar: CbirOr98NTE 79 224 . KQ414804.1 36527 36953 + 152 M 67 201 G 1 0 M 16 48 G 2 0 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36528 36953 152 + . gene_id 3 ; sequence CbirOr98NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36528 36953 . + . KQ414804.1 exonerate:protein2genome:local exon 36528 36953 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 36528 36953 152 + . alignment_id 3 ; Query CbirOr98NTE ; Align 36528 80 201 ; Align 36729 148 48 ; Align 36777 166 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr98NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 330 -> 390 Target range: 39992 -> 40250 331 : AspLeuGluTrpTyrLysLeuGluSerLysArgAlaArgAsnLeuIleLeuLeuMetIle : 350 |||! !.!.|||||| ! ||| ! !!|||!.!||| !:::|||:!!:!!:!!!!: ! AspCysAsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCys 39993 : GACTGTAACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGT : 40050 351 : ArgValAsnGluProPheArgIleThrAlaGlyLysValValProLeuThrMetThrThr : 370 |||!.!.!.! ! !!|||!:!||||||||||||||| !! !|||!!!:!!:!: ! ! ArgAlaGlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeu 40051 : CGCGCGCAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTG : 40110 371 : PheCysSer >>>> Target Intron 1 >>>> LeuLeuLysThrSerAlaGlyT : 381 ||| !:!! 78 bp :!!||||||||||||||||||| PheAsnAla++ ++ValLeuLysThrSerAlaGlyT 40111 : TTTAACGCTgt.........................agGTTTTAAAAACGTCTGCTGGAT : 40221 382 : yrIleSerPheLeuLeuAlaArgArgAsp : 390 ||:!!||| ! |||||||||! !!:!||| yrLeuSerValLeuLeuAlaMetLysAsp 40222 : ATCTTTCCGTGTTGCTAGCTATGAAAGAC : 40250 vulgar: CbirOr98NTE 330 390 . KQ414804.1 39992 40250 + 127 M 43 129 5 0 2 I 0 74 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39993 40250 127 + . gene_id 4 ; sequence CbirOr98NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39993 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39993 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40250 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40250 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39993 40250 127 + . alignment_id 4 ; Query CbirOr98NTE ; Align 39993 331 129 ; Align 40200 374 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr114 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 13 -> 240 Target range: 232414 -> 233098 14 : LeuThrAsnGlyMetAspArgSerAsnAspTyrAsnAspLeuGluTrpAlaIleGlyL : 33 ||| !:::..! |||! !! !|||! ! ...|||! !|||!::::!||| !: LeuAspSerSerArgAspThrLeuAsnAlaThrArgAspTyrGluTyrSerIleGlnV 232415 : CTGGACTCGTCCCGCGACACGTTGAACGCTACGCGAGACTACGAGTACAGCATCCAGG : 232472 34 : euAsnArgArgMetLeuLysPheValGlyLeuTrpProGlnAsnSerGluLysAlaAr : 52 !!|||||| !!.!.|||! ! :!!||| !||||||!:: !!!!|||! :!!|| alAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgValThrGluThrSerAr 232473 : TGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTGTTACAGAGACCTCGAG : 232529 53 : gGluLysLeuSerSerLysPheGlnLeuLeuPheAsnAlaIleThrLeuValPheVal : 71 |! :!!! ! ! ! ! ! !||| !.!!!.!..! !:!!|||:!!.!! ! gAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHisSerLeuMetIleSer 232530 : AGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCATTCTCTGATGATCTCC : 232586 72 : LeuThrIleProAlaIleMetSerLeuIleArgValTrpGlyAspMetMetLeuMetI : 91 ! !! !:!!|||..!|||:!!! !:!!:!: !! ! !..!:!: ! !! !! SerIleValProCysIleLeuPheIleLeuPheGluAspThrSerLeuGluGluArgM 232587 : TCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGA : 232646 92 : leAspAsnLeuGlnPheThrLeuCysLeuLeuIleThrIleLeuLysValAlaIleMe : 110 !: ! ::!:!! !! ! ! !!!!|||!!: ! !|||!!. !..! !:! etLysSerIleGlyProMetSerHisPheLeuMetGlyGluLeuAsnTyrCysCysLe 232647 : TGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAATTGAATTATTGCTGCTT : 232703 111 : tTrpSerAsnArgAlaAlaLeuSerProLeuIleAspMetIleAlaArgAspTrpMet : 129 !! !:!!!!. ! !! !:!! ! !! !:!:!!:..!:!: !!:!|||||| uLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnValLysGlnAspTrpArg 232704 : GTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGTGAAACAGGACTGGCGA : 232760 130 : ArgAlaLysMetLysGluGluArgAspValMetLeuLysArgAlaLysThrThrArgI : 149 !.!!.!|||! ! .!.||||||:!!|||||||||!.!|||||| ! !||| AsnValLysLysProValHisArgAspLeuMetLeuLysAsnAlaLysLeuGlyArgS 232761 : AACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAACGCGAAACTTGGACGTT : 232820 150 : leLeuAlaIleCysGlyGlyValLeuIleLeuLeuThrLeuValPheGlyLeuGlyPh : 168 :!!||| ! !!.!!.! !!! !!!:! ! ! !:!!! !! !! ! ! ! ! erIleAlaCysIleAlaAlaPheCysMetHisThrGlyValGlySerAspGluIleVa 232821 : CGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCGGCTCCGACGAAATAGT : 232877 169 : eSerSerLeuGlyMetSerLeuArgLeuValThrAsnLeuThrAspProGlyArgPro : 187 !!!!.!!||| !!|||||| ! !! !||| !||| !!:! !! !! ! !||| lThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSerTyrSerMetTyrPro 232878 : CACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAGTTACTCGATGTACCCG : 232934 188 : LeuProIleGlnThrTyr<->TyrLeuHisAspValThrArgSerProGlnPheGluL : 206 |||||| ! ! !||| ! ||| |||..!! ! !|||||| ! !|||: LeuProCysThrPheTyrThrLysLeuMetAspThrArgPheSerProThrAsnGluI 232935 : TTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTCAGTCCGACGAACGAGA : 232994 207 : euThrPheLeuAlaGlnGlyIleAlaLeuThrIleSerGlyIleSerTyrThrGlyVa : 225 !!! !|||:!! !||| !!:!!:!! ! !||| !..! ! ! !..!|||!. leMetPheValLeuGlnCysLeuSerGlyPheIleValAsnSerValThrValGlyAl 232995 : TAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGC : 233051 226 : lAspAsnPheLeuGlyLeuLeuMetLeuHisIleCysGlyGlnMet : 240 ! !..!!!. !!.!:!!||| !:!!||| |||||||||:!! aCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGlnLeu 233052 : CTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACAGCTG : 233098 vulgar: CbirOr114 13 240 . KQ414889.1 232414 233098 + 141 M 180 540 G 0 3 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232415 233098 141 + . gene_id 1 ; sequence CbirOr114 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232415 233098 . + . KQ414889.1 exonerate:protein2genome:local exon 232415 233098 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232415 233098 141 + . alignment_id 1 ; Query CbirOr114 ; Align 232415 14 540 ; Align 232958 194 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr114 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 24 -> 250 Target range: 278564 -> 279254 25 : AsnAspLeuGluTrpAlaIleGlyLeuAsnArgArgMetLeuLysPheValGlyLeuT : 44 !..|||! ! !!::::!:!! !:!!|||||| !!.!.|||||| :!!|||:!!| ThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValT 278565 : ACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTAT : 278622 45 : rpProGlnAsn<->SerGluLysAlaArgGluLysLeuSerSerLysPheGlnLeuLe : 62 |||||! !:! !!!! !! .!! !||||||:!!|||||| ! !!! !|| rpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLe 278623 : GGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTT : 278679 63 : uPheAsnAlaIleThrLeuValPheValLeuThrIleProAlaIleMetSerLeuIle : 81 |.!!!:!..!.!! !:!!! !|||:!!|||..! !|||:!: !!!:!!:!! uIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeu 278680 : AATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTC : 278736 82 : ArgValTrpGlyAspMetMetLeuMetIleAspAsnLeuGlnPheThrLeuCysLeuL : 101 ! ! ||||||:!: !! !||| ! ! :!! ! ! !! !! ! AspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysT 278737 : GACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCA : 278796 102 : euIleThrIleLeuLysValAlaIleMetTrpSerAsnArgAlaAlaLeuSerProLe : 120 !!!:.!!! :!!||| ! !|||:!: !|||..! !!!.! !:!!.!! !! hrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCy 278797 : CGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATG : 278853 121 : uIleAspMetIleAlaArgAspTrp<-><-><->MetArgAlaLysMetLysGluGlu : 136 !:!::!! ||| !! !|||||| :!: ! !:::...:::|||||| sValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGlu 278854 : CGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggag : 278910 137 : ArgAspValMetLeuLysArgAlaLysThrThrArgIleLeuAlaIleCysGlyGlyV : 156 |||::::::||| ! ! !!!|||!:!! ! !||| !|||||||||! !.!!!.!! ArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaG 278911 : agagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCG : 278970 157 : alLeuIleLeuLeuThrLeuValPheGlyLeuGlyPheSerSerLeu<->GlyMetSe : 174 !!!!!!:! !! ! ! !|||||| ! !!.! ! ! ! !!||| !.!:!: ! lyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValAr 278971 : GTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACG : 279027 175 : rLeuArgLeuValThrAsnLeuThrAspProGlyArgProLeuProIleGlnThrTyr : 193 ! !..!:!!:!! !||| !|||! !..!!:! !!!!!|||||| ! ! ! gThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGly 279028 : CACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGC : 279084 194 : TyrLeuHisAspValThrArgSerProGlnPheGluLeuThrPheLeuAlaGlnGlyI : 213 !||| ||| ! !! !||||||..!||||||:!!..! !!! !||| !!: LeuLeu---AspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysL 279085 : CTCCTC---GATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCT : 279141 214 : leAlaLeuThrIleSerGlyIleSerTyrThrGlyValAspAsnPheLeuGlyLeuLe : 232 !:||| ! !:!!! ! ! ! !..!|||!.! !!:!!!.:!!!.!:!!!! euAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPh 279142 : TGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTT : 279198 233 : uMetLeuHisIleCysGlyGlnMetGluAsnLeuHisLeuArgValArgAsnLeu : 250 !:!::!!|||:!!|||||||||.!...!! ||| !!:!:!! !!!.||| eValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeu 279199 : CGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTC : 279254 vulgar: CbirOr114 24 250 . KQ414889.1 278564 279254 + 120 M 23 69 G 0 3 M 81 243 G 0 9 M 43 129 G 0 3 M 24 72 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278565 279254 120 + . gene_id 2 ; sequence CbirOr114 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278565 279254 . + . KQ414889.1 exonerate:protein2genome:local exon 278565 279254 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278565 279254 120 + . alignment_id 2 ; Query CbirOr114 ; Align 278565 25 69 ; Align 278637 48 243 ; Align 278889 129 129 ; Align 279021 172 72 ; Align 279093 197 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr114 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 24 -> 250 Target range: 284511 -> 286204 25 : AsnAspLeuGluTrpAlaIleGlyLeuAsnArgArgMetLeuLysPheValGlyLeuT : 44 !..|||! ! !!::::!:!! !:!!|||||| !!.!.|||||| :!!|||:!!| ThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValT 284512 : ACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTAT : 284569 45 : rpProGlnAsn<->SerGluLysAlaArgGluLysLeuSerSerLysPheGlnLeuLe : 62 |||||! !:! !!!! !! .!! !||||||:!!|||||| ! !!! !|| rpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLe 284570 : GGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTT : 284626 63 : uPheAsnAlaIleThrLeuValPheValLeuThrIleProAlaIleMetSerLeuIle : 81 |.!!!:!..!.!! !:!!! !|||:!!|||..! !|||:!: !!!:!!:!! uIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeu 284627 : AATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTC : 284683 82 : ArgValTrpGlyAspMetMetLeuMetIleAspAsnLeuGlnPheThrLeuCysLeuL : 101 ! ! ||||||:!: !! !||| ! ! :!! ! ! !! !! !: AspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysM 284684 : GACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCA : 284743 102 : euIleThrIleLeuLysValAlaIleMetTrpSerAsnArgAlaAlaLeuSerProLe : 120 !!!!:.!! :!!||| ! !|||:!: |||..! !!!.! !:!!.!!! !! etMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCy 284744 : TGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATG : 284800 121 : uIleAspMetIleAlaArgAsp{Tr} >>>> Target Intron 1 >>>> {p} : 128 !:!: ! ||| ! !|||{||} 1012 bp {|} sValLysAspIleArgAlaAsp{Tr}++ +-{p} 284801 : CGTGAAGGACATTCGTGCGGAC{TG}gt.........................ac{G} : 285838 129 : MetArgAlaLysMetLysGluGluArgAspValMetLeuLysArgAlaLysThrThrA : 148 :!: ! !!.....:::|||||||||::::::||| ! ! !!!|||!:!! ! !| LeuSerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyA 285839 : CTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGAC : 285896 149 : rgIleLeuAlaIle<->CysGlyGlyValLeuIleLeuLeuThrLeuValPheGlyLe : 166 || !||||||||| |||!.!||| !!:!! !! ! ! !!!! !!!:! ! rgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrTh 285897 : GATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCAC : 285953 167 : uGlyPheSerSerLeuGlyMetSerLeuArgLeuValThrAsnLeuThrAspProGly : 185 !! !.!. !!! !! ! !:!: !! !..!:!!:!! !||| !|||! !..! rValMetProLeuCysThrValArgThrGluIleIleAspAsnGluThrValArgSer 285954 : GGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCT : 286010 186 : ArgProLeuProIleGlnThrTyrTyrLeuHisAspValThrArgSerProGlnPheG : 205 !:! !!!!!|||||| ! ! ! !||| ||| ! !! !||||||..!|||| GlnAlaPheProIleTyrArgGlyLeuLeu---AspProArgThrSerProSerPheG 286011 : CAAGCGTTCCCGATCTATCGCGGCCTTCTC---GATCCGCGTACCAGCCCGTCGTTCG : 286067 206 : luLeuThrPheLeuAlaGlnGlyIleAlaLeuThrIleSerGlyIleSerTyrThrGl : 224 ||:!!..! !!! !||| !!:!:||| ! !:!!! ! ! ! !..!|| luIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGl 286068 : AGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGG : 286124 225 : yValAspAsnPheLeuGlyLeuLeuMetLeuHisIleCysGlyGlnMetGluAsnLeu : 243 |!.! !!:!!!. !!.!:!!!!!:!::!!|||:!!|||||||||.!...!! ||| yAlaCysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeu 286125 : AGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTT : 286181 244 : HisLeuArgValArgAsnLeu : 250 !!:!:!! !!!.||| ValThrLysLeuAspLysLeu 286182 : GTGACAAAGCTGGATAAGCTC : 286204 vulgar: CbirOr114 24 250 . KQ414889.1 284511 286204 + 120 M 23 69 G 0 3 M 80 240 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 24 72 G 0 3 M 43 129 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284512 286204 120 + . gene_id 3 ; sequence CbirOr114 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284512 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284512 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286204 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286204 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284512 286204 120 + . alignment_id 3 ; Query CbirOr114 ; Align 284512 25 69 ; Align 284584 48 240 ; Align 285839 129 72 ; Align 285914 153 129 ; Align 286043 197 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr98NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 321 -> 374 Target range: 301877 -> 302036 322 : CysGluAlaValTyrArgAlaMetCysAspLeuGluTrpTyrLysLeuGluSerLysA : 341 |||... !:!! ! !||| !! !!!::!!!!:||||||!!.||| !:!!|||| CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysA 301878 : TGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGA : 301935 342 : rgAlaArgAsnLeuIleLeuLeuMetIleArgValAsnGluProPheArgIleThrAl : 360 ||||| !:!!||||||||||||! :!:! ! !.!. ! ||| !:!:!!||||| rgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAl 301936 : GAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGC : 301992 361 : aGlyLysValValProLeuThrMetThrThrPheCysSerLeu : 374 |||||||:!!:!! !|||:!!:!!!.!|||||| !!|||:!! aGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301993 : AGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: CbirOr98NTE 321 374 . KQ414889.1 301877 302036 + 114 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301878 302036 114 + . gene_id 1 ; sequence CbirOr98NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301878 302036 114 + . alignment_id 1 ; Query CbirOr98NTE ; Align 301878 322 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr98NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 331 -> 381 Target range: 280306 -> 280456 332 : LeuGluTrpTyrLysLeuGluSerLysArgAlaArgAsnLeuIleLeuLeuMetIleA : 351 :!!!!:||||||:::||| !.!!|||!:!|||!:!..!|||||||||:!!.!. ! IleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaV 280307 : ATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCG : 280364 352 : rgValAsnGluProPheArgIleThrAlaGlyLysValValProLeuThrMetThrTh : 370 ! !|||... !!.!.!:!:!!||||||||||||:!!:!! !|||:!!:!:!:!!: alSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSe 280365 : TGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAG : 280421 371 : rPheCysSerLeuLeuLysThrSerAlaGlyTyr : 381 !|||||||||:!! !! ! !!:! !..!||| rPheCysSerValSerIleIleAsnLeuSerTyr 280422 : CTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 280456 vulgar: CbirOr98NTE 331 381 . KQ414889.1 280306 280456 + 111 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280307 280456 111 + . gene_id 2 ; sequence CbirOr98NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280307 280456 . + . KQ414889.1 exonerate:protein2genome:local exon 280307 280456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280307 280456 111 + . alignment_id 2 ; Query CbirOr98NTE ; Align 280307 332 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr98NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 331 -> 381 Target range: 287093 -> 287243 332 : LeuGluTrpTyrLysLeuGluSerLysArgAlaArgAsnLeuIleLeuLeuMetIleA : 351 :!!!!:||||||:::||| !.!!|||! !|||!:!..!|||||||||:!!.!. ! IleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaV 287094 : ATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCG : 287151 352 : rgValAsnGluProPheArgIleThrAlaGlyLysValValProLeuThrMetThrTh : 370 ! !|||... !!.!.!:!:!!||||||||||||:!!:!! !|||:!!:!:!:!!: alSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSe 287152 : TGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAG : 287208 371 : rPheCysSerLeuLeuLysThrSerAlaGlyTyr : 381 !|||||||||:!! !! ! !!:! !..!||| rPheCysSerValSerIleIleAsnLeuSerTyr 287209 : CTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 287243 vulgar: CbirOr98NTE 331 381 . KQ414889.1 287093 287243 + 108 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287094 287243 108 + . gene_id 3 ; sequence CbirOr98NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287094 287243 . + . KQ414889.1 exonerate:protein2genome:local exon 287094 287243 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287094 287243 108 + . alignment_id 3 ; Query CbirOr98NTE ; Align 287094 332 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr98NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 317 -> 371 Target range: 292380 -> 292542 318 : ValThrGluGlnCysGluAlaValTyrArgAlaMetCysAspLeuGluTrpTyrLysL : 337 ||| ! ! ||| !!...! !:!! !.!||| ! !||| !|||||||||!!.| ValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnL 292381 : GTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATC : 292438 338 : euGluSerLysArgAlaArgAsnLeuIleLeuLeuMetIleArgValAsnGluProPh : 356 || !!!!::!!:!||||||:!!:!!:!!|||:!!:!: !! !..!!!..!.|||.! euProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIl 292439 : TGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGAT : 292495 357 : eArgIleThrAlaGlyLysValValProLeuThrMetThrThrPhe : 371 !!:!:!!||||||||||||:!! !! !|||:!!:!!!.!|||||| eLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPhe 292496 : CAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTT : 292542 vulgar: CbirOr98NTE 317 371 . KQ414889.1 292380 292542 + 105 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292381 292542 105 + . gene_id 4 ; sequence CbirOr98NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292381 292542 . + . KQ414889.1 exonerate:protein2genome:local exon 292381 292542 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292381 292542 105 + . alignment_id 4 ; Query CbirOr98NTE ; Align 292381 318 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr97NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 318 -> 372 Target range: 292380 -> 292542 319 : ValThrAsnGlnCysGluGlyIleTyrArgAlaMetCysAspLeuGluTrpTyrLysL : 338 ||| ! !!||| !!...! !||| !.!||| ! !||| !|||||||||!!.| ValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnL 292381 : GTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATC : 292438 339 : euGluSerArgLysAlaLysSerLeuIleProLeuMetIleArgAlaLysGlnProPh : 357 || !!!!|||||||||:::..!:!!:!!! !:!!:!: !! !.!!|||!!.|||.! euProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIl 292439 : TGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGAT : 292495 358 : eArgIleThrAlaGlyLysIlePheProLeuThrMetThrThrPhe : 372 !!:!:!!|||||||||||||||||| !|||:!!:!!!.!|||||| eLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPhe 292496 : CAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTT : 292542 vulgar: CbirOr97NTE 318 372 . KQ414889.1 292380 292542 + 113 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292381 292542 113 + . gene_id 1 ; sequence CbirOr97NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292381 292542 . + . KQ414889.1 exonerate:protein2genome:local exon 292381 292542 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292381 292542 113 + . alignment_id 1 ; Query CbirOr97NTE ; Align 292381 319 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr97NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 3 -> 216 Target range: 221381 -> 222020 4 : AlaIleGlnLeuAsnArgPheGlyLeuGluLeuIleGlyLeuTrpProGlyAsnAspG : 23 ::!:!:||||||!:!|||!:: !|||:!!! !||||||:!!||||||..!:::! !. SerValGlnLeuSerArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaA 221382 : AGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCA : 221439 24 : luValAlaGluValLysLeuAlaSerAspLeuArgValGlyIleIlePheValIleVa : 42 !.:!!:!! !|||:!! ! ! ! !!! !! !:!!..!:!!:!!! ! !! !:! snIleSerThrValGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLe 221440 : ACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCT : 221496 43 : lThrLeuIleSerGlyIleProLeuValCysSerLeuValArgValTrpGlyAspMet : 61 !! ! !.!! ! !:!!|||! ! ! !! !:!!:!!! !! ! ! !|||:!: uIleThrPheLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspVal 221497 : GATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTC : 221553 62 : IleLeuMetIleAspAsnLeuGlnIleThrLeuProLeuLeuIleValSerLeuLysL : 81 ! !! ||| ! ||| ! ! !! !:!!!!:!.!! !||||||! TyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysT 221554 : TACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGT : 221613 82 : euValValMetArgArgLysArgMetAlaLeuLeuSerLeuValLysMetMetAlaGl : 100 ! !:!!:!!! !! ! ! ..!! ! !:!!! !..!! !:!!:!! !!:! ! yrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTr 221614 : ATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATG : 221670 101 : uAspTrpMetGluLeuLysThrAlaLysGluLysAspValMetIleGlyArgAlaHis : 119 !||||||! !.!.:!!! !:!!|||!!:||||||:!!||||||! !!.!||| ! pAspTrpLysAsnIleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIle 221671 : GGATTGGAAGAATATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATT : 221727 120 : LeuAlaArgAlaIleValIleSerGlyTyrValLeuMetValLeuAlaPheIle<->V : 138 !!!!.!||| !:!::!!!!:! ! !! !!!!!||| ! !...|||::: PheGlyArgArgLeuIleMetIleCysThrPhePheMetTyrSerGlyPheValPheT 221728 : TTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGTACAGTggtttcgtttttt : 221787 139 : alValIleValLeuProTyrTyrGlyPheSerLeuThrArgHisLeuThrAsnLeuTh : 157 |||!.!:!!|||!:! !! ! !!.!:!! !! !!!. !...|||:::|| yrTyrIleAlaIleProPheSerValGlyLysIleProAlaGlnAspValAsnValTh 221788 : attacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaac : 221844 158 : rAspProGlyLysProLeuProLeuGlnThrTyrTyrPheTyrAspIleAsnArgSer : 176 | !! ! !!!!|||!!! :!! !:!.!! !|||! !... !||| rPheIleProMetValPheProPhe---SerArgPheIleValAspThrArgTyrSer 221845 : ttttattCCAATGGTGTTTCCTTTC---TCGAGATTTATCGTCGATACTCGGTACAGT : 221898 177 : ProGlnPheGluLeuThrPheLeuIleGlnAlaIleThrIlePheLeuAlaAlaValV : 196 ||| ! !|||:!! !|||! !:!!||| !!!:.!! ! !||| ! ! !: ProValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerI 221899 : CCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTA : 221958 197 : alTyrThrSerValAspAlaPheLeuGlyLeuThrIleLeuHisLeuCysGlyGlnLe : 215 !! :!!:!!!.! !::!!!.:!!!.!:!! ! !:!!||| !|||||||||:! leThrSerAlaAlaCysSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMe 221959 : TTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGAT : 222015 216 : uGlu : 216 !:!! tGln 222016 : GCAA : 222020 vulgar: CbirOr97NTE 3 216 . KQ414889.1 221381 222020 + 111 M 134 402 G 0 3 M 28 84 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221382 222020 111 + . gene_id 2 ; sequence CbirOr97NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221382 222020 . + . KQ414889.1 exonerate:protein2genome:local exon 221382 222020 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221382 222020 111 + . alignment_id 2 ; Query CbirOr97NTE ; Align 221382 4 402 ; Align 221787 138 84 ; Align 221871 167 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr97NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 322 -> 375 Target range: 301877 -> 302036 323 : CysGluGlyIleTyrArgAlaMetCysAspLeuGluTrpTyrLysLeuGluSerArgL : 342 |||... !||| ! !||| !! !!!::!!!!:||||||!!.||| !:!!!:!! CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysA 301878 : TGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGA : 301935 343 : ysAlaLysSerLeuIleProLeuMetIleArgAlaLysGlnProPheArgIleThrAl : 361 :!||| ! ..!||||||! !|||! :!:! !:!!:!! ! ||| !:!:!!||||| rgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAl 301936 : GAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGC : 301992 362 : aGlyLysIlePheProLeuThrMetThrThrPheCysSerLeu : 375 ||||||||||.!! !|||:!!:!!!.!|||||| !!|||:!! aGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301993 : AGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: CbirOr97NTE 322 375 . KQ414889.1 301877 302036 + 103 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301878 302036 103 + . gene_id 3 ; sequence CbirOr97NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301878 302036 103 + . alignment_id 3 ; Query CbirOr97NTE ; Align 301878 323 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr97NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 330 -> 372 Target range: 206266 -> 206392 331 : CysAspLeuGluTrpTyrLysLeuGluSerArgLysAlaLysSerLeuIleProLeuM : 350 ||| :!!.!.||||||:::||| !!:!||| ! |||:::|||:!!|||! !:!!! CysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleI 206267 : TGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAA : 206324 351 : etIleArgAlaLysGlnProPheArgIleThrAlaGlyLysIlePheProLeuThrMe : 369 !: !! !:!!!!. ! |||.!.!:!:!!||||||||||||!!:||| !:!!:!!:! leAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLe 206325 : TTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTT : 206381 370 : tThrThrPhe : 372 :.!!!:!||| uAlaSerPhe 206382 : AGCTAGTTTC : 206392 vulgar: CbirOr97NTE 330 372 . KQ414889.1 206266 206392 + 100 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206267 206392 100 + . gene_id 4 ; sequence CbirOr97NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206267 206392 . + . KQ414889.1 exonerate:protein2genome:local exon 206267 206392 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206267 206392 100 + . alignment_id 4 ; Query CbirOr97NTE ; Align 206267 331 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr97NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 318 -> 379 Target range: 297632 -> 297815 319 : ValThrAsnGlnCysGluGlyIleTyrArgAlaMetCysAspLeuGluTrpTyrLysL : 338 |||:!! !|||..!||| !.!! !!.!||| ! !:!!:!!|||||||||!!.| ValSerCysGlnAlaGluLysPheGlyAsnAlaAlaTyrAsnIleGluTrpTyrAsnL 297633 : GTTTCTTGTCAGGCTGAAAAATTCGGCAATGCAGCTTATAACATCGAATGGTACAACT : 297690 339 : euGluSerArgLysAlaLysSerLeuIleProLeuMetIleArgAlaLysGlnProPh : 357 || ! !!!.!!:!||| ..!|||:!: !:!!!!: !! !|||||| ||| euProProAsnArgAlaLeuAspLeuValLeuMetIleGlyIleAlaLysPheProPr 297691 : TACCGCCAAACAGGGCTCTCGATCTGGTGTTAATGATCGGTATAGCAAAATTTCCACC : 297747 358 : eArgIleThrAlaGlyLysIlePheProLeuThrMetThrThrPheCysSerLeuLeu : 376 |||:!!|||...|||||||||||| ::::!!!!:!.!|||||| !!:!!:!!! ! oArgLeuThrGlyGlyLysIlePheAspIleSerIleAsnThrPheSerAlaValArg 297748 : GAGGCTCACAggtggaaaaatattcgatatatCGATAAACACGTTCAGTGCCGTACGT : 297804 377 : LysThrSer : 379 !:: ||| ArgGlnSer 297805 : Agacaaagt : 297815 vulgar: CbirOr97NTE 318 379 . KQ414889.1 297632 297815 + 100 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297633 297815 100 + . gene_id 5 ; sequence CbirOr97NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297633 297815 . + . KQ414889.1 exonerate:protein2genome:local exon 297633 297815 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297633 297815 100 + . alignment_id 5 ; Query CbirOr97NTE ; Align 297633 319 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr89NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 316 -> 371 Target range: 292377 -> 292542 317 : ArgLeuValThrGlnCysGluAlaMetTyrTyrAlaAlaTyrGluTyrGluTrpTyrL : 336 |||:!!:!! !||| !!...! !!!: :!!|||:!!|||!!: |||||||||! ArgValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrA 292378 : CGAGTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACA : 292435 337 : ysLeuGluProLysLysAlaLysValLeuValLeuLeuMetIleArgThrSerLysPr : 355 !.||| ! !::!||||||:::! !:!!||||||:!!:!: !! !|||!.! ! || snLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisPr 292436 : ATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCC : 292492 356 : oLeuTyrIleThrAlaGlyLysIlePheProMetThrMetSerThrPhe : 371 |:!! ! :!!|||||||||||||||||| !:!::!!:!!!:!|||||| oIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPhe 292493 : GATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTT : 292542 vulgar: CbirOr89NTE 316 371 . KQ414889.1 292377 292542 + 120 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292378 292542 120 + . gene_id 1 ; sequence CbirOr89NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292378 292542 . + . KQ414889.1 exonerate:protein2genome:local exon 292378 292542 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292378 292542 120 + . alignment_id 1 ; Query CbirOr89NTE ; Align 292378 317 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr89NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 317 -> 381 Target range: 280264 -> 280456 318 : LeuValThrGlnCysGluAlaMetTyrTyrAlaAlaTyrGluTyrGluTrpTyrLysL : 337 !!!|||:!! !!||| ! !:!: ! :!!.!!||| ! !!!:||||||:::| PheValSer***CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgL 280265 : TTCGTTTCATAGTGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTT : 280322 338 : euGluProLysLysAlaLysValLeuValLeuLeuMetIleArgThrSerLysProLe : 356 || ! !|||||||||:!!! !|||:!!|||:!!.!. ! !:!!!:!... !!:! euProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIl 280323 : TGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCAT : 280379 357 : uTyrIleThrAlaGlyLysIlePheProMetThrMetSerThrPheCysAsnIleIle : 375 ! ! :!!|||||||||||||||.!! !:!::!!:!:|||!:!||||||!:!:!:! ! eLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSer 280380 : AAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGT : 280436 376 : LysThrSerAlaGlyTyr : 381 ! ! !!:! !..!||| IleIleAsnLeuSerTyr 280437 : ATCATAAATTTATCCTAT : 280456 vulgar: CbirOr89NTE 317 381 . KQ414889.1 280264 280456 + 108 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280265 280456 108 + . gene_id 2 ; sequence CbirOr89NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280265 280456 . + . KQ414889.1 exonerate:protein2genome:local exon 280265 280456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280265 280456 108 + . alignment_id 2 ; Query CbirOr89NTE ; Align 280265 318 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr89NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 321 -> 374 Target range: 301877 -> 302036 322 : CysGluAlaMetTyrTyrAlaAlaTyrGluTyrGluTrpTyrLysLeuGluProLysL : 341 |||... !!!: !! |||:!!|||||| !!!:||||||!!.||| ! !!|||! CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysA 301878 : TGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGA : 301935 342 : ysAlaLysValLeuValLeuLeuMetIleArgThrSerLysProLeuTyrIleThrAl : 360 :!||| ! ! !|||:!!||||||! :!:! !:!!..! ! |||! ! ! :!!||||| rgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAl 301936 : GAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGC : 301992 361 : aGlyLysIlePheProMetThrMetSerThrPheCysAsnIle : 374 ||||||||||.!! !:!::!!:!!!:!|||||| !!::!:!! aGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301993 : AGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: CbirOr89NTE 321 374 . KQ414889.1 301877 302036 + 108 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301878 302036 108 + . gene_id 3 ; sequence CbirOr89NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301878 302036 108 + . alignment_id 3 ; Query CbirOr89NTE ; Align 301878 322 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr89NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 1 -> 222 Target range: 278567 -> 279242 2 : AsnPheGluTrpAlaThrHisLeuAsnTyrLeuIleLeuAsnAlaIleGlyIleTrpP : 21 :!!!:: !!::::!..!!!.:!!||| !! !.!!|||!!. !!||||||:!!|||| AspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpP 278568 : GATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGC : 278625 22 : roMetThr<->HisLysArgValTyrAspLysValLeuSerAspLeuArgAlaIleLe : 39 ||:!:!:! ! !! !..!! !!:|||:!! !|||! :!!! !|||:!!:! roLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIl 278626 : CTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAAT : 278682 40 : uThrPheIleIleIleThrPheIleGlyValIleProAlaIleHisSerLeuLeuArg : 58 !!:!! !.!!:!:||| !|||:!! !||| !|||:!: !!!!:!!||| ! eSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAsp 278683 : CAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGAC : 278739 59 : ThrTrpGlyAspMetMetLeuMetIleAspAsnLeuGlnTyrThrLeuProLeuIleT : 78 ! ! ||||||:!: !! !||| ! ! :!! ! ! ! !! !! ! LysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrM 278740 : AAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGA : 278799 79 : hrThrValMetLysLeuValValIleTrpTrpLysLysProAspLeuValLeuValIl : 97 !.!!..!!!:|||! ! !:!!:!! !! !::: ! ! :!!! ! ! !:! etAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysVa 278800 : TGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGT : 278856 98 : eAsnMetIleAlaGluAspTrp<-><-><->IleLysAlaLysThrAspLysGluLeu : 113 :||| ||| ! !|||||| :!!..! !::: ::::::||| lAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArg 278857 : GAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagaga : 278913 114 : TyrIleMetIleLysGlnAlaGlnAsnThrArgIleValThrMetIleGlyTyrValP : 133 ||||||! ! ...|||::!! ! !||| !:!!.!!!!:.!!.!! !! !| GluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyP 278914 : gagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTT : 278973 134 : heMetValMet<->GlyIleThrLeuLeuValIleLeuProCysPheGlyLysSerVa : 151 ||||| ! |||:!! !! ! !!.!:!::!!|||! |||!.! ! !!.. heMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgTh 278974 : TCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCAC : 279030 152 : lArgTyrThrThrAsnIleThrAspProAsnLysLeuLeuProLeuGlnThrTyrTyr : 170 !..! !! ! !||| !|||! !::!:!! !!!!|||:!! ! ! ! rGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArg---Gly 279031 : GGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGC---GGC : 279084 171 : LeuTyrAspLysAspGlnSerProPhePheGluLeuThrPheAlaAlaGlnThrValV : 190 ||| !||| ! ! ||||||! ||||||:!!..! ! !||| !:!!! LeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuA 279085 : CTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGG : 279144 191 : alIlePheMetSerGlyAlaThrTyrGlyGlyIleAspThrLeuLeuGlyLeuLeuIl : 209 .! |||:!:! ! !:!!..! !! !||| ! !!:!|||:!!!.!:!!!!!:! laAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheVa 279145 : CCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGT : 279201 210 : ePheHisLeuCysGlyGlnMetGluAsnLeuArgGluLys : 222 !.!.|||:!!|||||||||.!...!! ||| ! !||| lMetHisValCysGlyGlnPheArgIleLeuValThrLys 279202 : CATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAG : 279242 vulgar: CbirOr89NTE 1 222 . KQ414889.1 278567 279242 + 104 M 22 66 G 0 3 M 81 243 G 0 9 M 32 96 G 0 3 M 32 96 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278568 279242 104 + . gene_id 4 ; sequence CbirOr89NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278568 279242 . + . KQ414889.1 exonerate:protein2genome:local exon 278568 279242 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278568 279242 104 + . alignment_id 4 ; Query CbirOr89NTE ; Align 278568 2 66 ; Align 278637 24 243 ; Align 278889 105 96 ; Align 278988 137 96 ; Align 279084 170 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr89NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 320 -> 378 Target range: 297641 -> 297815 321 : GlnCysGluAlaMetTyrTyrAlaAlaTyrGluTyrGluTrpTyrLysLeuGluProL : 340 |||..!||| !.!. ! !!|||||||||.!. !|||||||||!!.||| !|||! GlnAlaGluLysPheGlyAsnAlaAlaTyrAsnIleGluTrpTyrAsnLeuProProA 297642 : CAGGCTGAAAAATTCGGCAATGCAGCTTATAACATCGAATGGTACAACTTACCGCCAA : 297699 341 : ysLysAlaLysValLeuValLeuLeuMetIleArgThrSerLysProLeuTyrIleTh : 359 !.!:!||| ! !|||||||||:!!!!: !! !.!!!.! |||! ! :!!|| snArgAlaLeuAspLeuValLeuMetIleGlyIleAlaLysPheProProArgLeuTh 297700 : ACAGGGCTCTCGATCTGGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCAC : 297756 360 : rAlaGlyLysIlePheProMetThrMetSerThrPheCysAsnIleIleLysThrSer : 378 |...|||||||||||| ::::!!!!:!:!|||||| !! !:!! !!:: ||| rGlyGlyLysIlePheAspIleSerIleAsnThrPheSerAlaValArgArgGlnSer 297757 : AggtggaaaaatattcgatatatCGATAAACACGTTCAGTGCCGTACGTAgacaaagt : 297813 vulgar: CbirOr89NTE 320 378 . KQ414889.1 297641 297815 + 103 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297642 297815 103 + . gene_id 5 ; sequence CbirOr89NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297642 297815 . + . KQ414889.1 exonerate:protein2genome:local exon 297642 297815 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297642 297815 103 + . alignment_id 5 ; Query CbirOr89NTE ; Align 297642 321 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr89NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 316 -> 381 Target range: 287048 -> 287243 317 : ArgLeuValThrGlnCysGluAlaMetTyrTyrAlaAlaTyrGluTyrGluTrpTyrL : 336 |||...||| ||| ! !:!: !! :!!.!!||| ! !!!:||||||: ArgPheVal******CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrA 287049 : cgcttcgtttaatagtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATC : 287106 337 : ysLeuGluProLysLysAlaLysValLeuValLeuLeuMetIleArgThrSerLysPr : 355 ::||| ! !|||! !|||:!!! !|||:!!|||:!!.!. ! !:!!!:!... ! rgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSe 287107 : GTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTC : 287163 356 : oLeuTyrIleThrAlaGlyLysIlePheProMetThrMetSerThrPheCysAsnIle : 374 !:!! ! :!!|||||||||||||||.!! !:!::!!:!:|||!:!||||||!:!:!: rIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSerVal 287164 : CATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTG : 287220 375 : IleLysThrSerAlaGlyTyr : 381 ! !! ! !!:! !..!||| SerIleIleAsnLeuSerTyr 287221 : AGTATCATAAATTTATCCTAT : 287243 vulgar: CbirOr89NTE 316 381 . KQ414889.1 287048 287243 + 102 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287049 287243 102 + . gene_id 6 ; sequence CbirOr89NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287049 287243 . + . KQ414889.1 exonerate:protein2genome:local exon 287049 287243 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287049 287243 102 + . alignment_id 6 ; Query CbirOr89NTE ; Align 287049 317 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr89NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 320 -> 374 Target range: 234985 -> 235147 321 : GlnCysGluAlaMetTyrTyrAlaAlaTyrGluTyrGluTrpTyrLysLeuGluProL : 340 |||||| !:!: ! !!.!||| ! !|||||||||::!||| ! !| GlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProHisL 234986 : CAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATA : 235043 341 : ysLysAlaLysValLeuValLeuLeuMetIleArgThrSerLysProLeuTyrIleTh : 359 ||! ||| ! !||||||:!!:!!!!: !|||:!!|||! ! !:!! ! ||||| ysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIleTh 235044 : AAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCAC : 235100 360 : rAlaGlyLysIlePheProMetThrMetSerThrPheCysAsnIle : 374 ||||||||||.!!.!.! !|||:!!:!::!!|||||| !!:!!:!: rAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235101 : CGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: CbirOr89NTE 320 374 . KQ414889.1 234985 235147 + 100 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234986 235147 100 + . gene_id 7 ; sequence CbirOr89NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234986 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234986 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234986 235147 100 + . alignment_id 7 ; Query CbirOr89NTE ; Align 234986 321 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr92NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 321 -> 374 Target range: 301877 -> 302036 322 : CysAsnArgValTyrGlnAlaIleTyrAsnLeuGluTrpTyrLysLeuGluAlaArgL : 341 |||!:!!:!:!! !..!||| |||.!.:!!!!:||||||!!.||| !|||!:!! CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysA 301878 : TGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGA : 301935 342 : ysAlaArgAsnLeuValLeuLeuMetIleArgAlaSerGluProPheArgIleThrAl : 360 :!||| !:!!|||:!!||||||! :!:! !:!!..! ! ||| !:!:!!||||| rgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAl 301936 : GAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGC : 301992 361 : aGlyLysValIleProLeuThrMetAlaThrPheCysSerLeu : 374 |||||||:!!||| !|||:!!:!! !|||||| !!|||:!! aGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301993 : AGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: CbirOr92NTE 321 374 . KQ414889.1 301877 302036 + 122 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301878 302036 122 + . gene_id 1 ; sequence CbirOr92NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301878 302036 122 + . alignment_id 1 ; Query CbirOr92NTE ; Align 301878 322 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr92NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 321 -> 374 Target range: 280276 -> 280435 322 : CysAsnArgValTyrGlnAlaIleTyrAsnLeuGluTrpTyrLysLeuGluAlaArgL : 341 ||| !:!||| ! !:!!! !|||! :!!!!:||||||:::||| !!.!!:!| CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysL 280277 : TGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGA : 280334 342 : ysAlaArgAsnLeuValLeuLeuMetIleArgAlaSerGluProPheArgIleThrAl : 360 |||||!:!..!|||:!!|||:!!.!. ! !:!!!:!... !!.!.!:!:!!||||| ysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 280335 : AAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 280391 361 : aGlyLysValIleProLeuThrMetAlaThrPheCysSerLeu : 374 |||||||:!!||| !|||:!!:!:::!!:!|||||||||:!! aGlyLysIleIleAspLeuSerLeuSerSerPheCysSerVal 280392 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTG : 280435 vulgar: CbirOr92NTE 321 374 . KQ414889.1 280276 280435 + 120 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280277 280435 120 + . gene_id 2 ; sequence CbirOr92NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280277 280435 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280435 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280277 280435 120 + . alignment_id 2 ; Query CbirOr92NTE ; Align 280277 322 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr92NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 321 -> 374 Target range: 287063 -> 287222 322 : CysAsnArgValTyrGlnAlaIleTyrAsnLeuGluTrpTyrLysLeuGluAlaArgL : 341 ||| !:!||| ! !:!!! !|||! :!!!!:||||||:::||| !!.!!:!! CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysT 287064 : tGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAA : 287121 342 : ysAlaArgAsnLeuValLeuLeuMetIleArgAlaSerGluProPheArgIleThrAl : 360 !|||!:!..!|||:!!|||:!!.!. ! !:!!!:!... !!.!.!:!:!!||||| hrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 287122 : CAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 287178 361 : aGlyLysValIleProLeuThrMetAlaThrPheCysSerLeu : 374 |||||||:!!||| !|||:!!:!:::!!:!|||||||||:!! aGlyLysIleIleAspLeuSerLeuSerSerPheCysSerVal 287179 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTG : 287222 vulgar: CbirOr92NTE 321 374 . KQ414889.1 287063 287222 + 114 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287064 287222 114 + . gene_id 3 ; sequence CbirOr92NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287064 287222 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287222 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287064 287222 114 + . alignment_id 3 ; Query CbirOr92NTE ; Align 287064 322 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr92NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 319 -> 371 Target range: 234982 -> 235138 320 : GluHisCysAsnArgValTyrGlnAlaIleTyrAsnLeuGluTrpTyrLysLeuGluA : 339 :!!!!.|||!.!!:!||| :!! !:!:|||! !|||||||||::!||| GlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProH 234983 : CAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTC : 235040 340 : laArgLysAlaArgAsnLeuValLeuLeuMetIleArgAlaSerGluProPheArgIl : 358 !!:!! |||! !..!||||||:!!:!!!!: !|||:!!||| ! !.!.!:!|| isLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIl 235041 : ATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAAT : 235097 359 : eThrAlaGlyLysValIleProLeuThrMetAlaThrPhe : 371 ||||||||||||| !!:!!! !:!!:!!:!:||||||||| eThrAlaGlyLysPheLeuGlnMetSerValAlaThrPhe 235098 : CACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTT : 235138 vulgar: CbirOr92NTE 319 371 . KQ414889.1 234982 235138 + 113 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234983 235138 113 + . gene_id 4 ; sequence CbirOr92NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234983 235138 . + . KQ414889.1 exonerate:protein2genome:local exon 234983 235138 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234983 235138 113 + . alignment_id 4 ; Query CbirOr92NTE ; Align 234983 320 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr92NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 322 -> 371 Target range: 292395 -> 292542 323 : AsnArgValTyrGlnAlaIleTyrAsnLeuGluTrpTyrLysLeuGluAlaArgLysA : 342 !:!..!:!! !!.||| !|||:!! !|||||||||!!.||| ! !||||||| SerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgArgLysA 292396 : AGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGG : 292453 343 : laArgAsnLeuValLeuLeuMetIleArgAlaSerGluProPheArgIleThrAlaGl : 361 |||||:!!:!!||||||:!!:!: !! !.!!!.!.!.|||.!!!:!:!!|||||||| laArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuThrAlaGl 292454 : CTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGG : 292510 362 : yLysValIleProLeuThrMetAlaThrPhe : 371 ||||:!!.!! !|||:!!:!! !|||||| yLysIlePheValLeuSerLeuAsnThrPhe 292511 : CAAAATATTCGTTCTCTCGTTGAACACTTTT : 292542 vulgar: CbirOr92NTE 322 371 . KQ414889.1 292395 292542 + 113 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292396 292542 113 + . gene_id 5 ; sequence CbirOr92NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292396 292542 . + . KQ414889.1 exonerate:protein2genome:local exon 292396 292542 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292396 292542 113 + . alignment_id 5 ; Query CbirOr92NTE ; Align 292396 323 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr92NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 2 -> 215 Target range: 289735 -> 290374 3 : TrpAlaValGluLeuAsnArgTyrGlyLeuGluPheValGlyLeuTrpPro<->ThrS : 21 !::.!! !!|||||| !!.!!:: !|||:!! :!!|||:!!!::||| ..!! TyrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrProPheValP 289736 : TACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCT : 289793 22 : erAspLysAlaAlaLysHisAsnTyrIleSerAsnLeuArgAlaTyrIleIlePheIl : 40 !..!:::|||::!!:!!.!.!. ! :!!::::!! ! ! !:!::!!! ! heSerArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLeuValCysCy 289794 : TTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTG : 289850 41 : eIleIleThrPheValCysValIleProLeuIleCysSerLeuIleArgValLeuAsn : 59 ! ||| ! !! !:!!:!!|||!!!! ! ! !:!!:!! ! ! !||| sSerIleLeuGlnPheIleIleValProPheSerHisHisValLeuPheSerAspAsn 289851 : CTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAAC : 289907 60 : AsnIleIleLeuValIleAspAsnLeuGlnPheThrLeuSerMetMetValValLeuP : 79 :!!!!:! ! ! !!:!! ! |||||| ! ! !! ! :!!..!..!!!!| AspMetAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuThrThrPheP 289908 : GACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCT : 289967 80 : heGlnPheIleIleMetArgTrpLysGlnThrAlaLeuLeuSerIleLeuLysMetMe : 98 ||:!!!:! ! !.!.!!! !||| :!!|||:!! ! !! !:!!||| !! heLysTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysValLysHisIl 289968 : TCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACAT : 290024 99 : tAlaLysAspTrpIleValPheLysIleAspThrGlnArgAspValMetMetLysTrp : 117 :! !!:!||||||! :!!!!.::: !!!: !!!.|||! !:!!|||:!:!:!!:: eGluArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMetLeuArgTyr 290025 : CGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATAC : 290081 118 : AlaArgThrAlaArg<->ValIleAlaIleCysGlyTyrIleValIleGlyPheGlyI : 136 !.!! !! !::!||| :!!||| !:!:|||!.! !.!!:!! ! ! !|||: ValThrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyL 290082 : GTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTC : 290141 137 : leIleValValIleIleProProTyrPheGlyIleProPheArgLysLeuSerAsnLe : 155 !: ! ! !! !:!! !|||! |||..! !:!||| ! !||| euSerTyrAsnThrValIleProLeuPheSer---------LysLysSerValAsnGl 290142 : TGTCTTATAACACTGTCATACCGTTGTTCTCG---------AAGAAGAGCGTGAACGG : 290189 156 : uThrAspArgAspLysProLeuValLeuGlnAlaTyr<->TyrPheTyrAspThrAsp : 173 !!.!! ! ! !!:!||||||..!! !! !.!||| ! |||!:!|||..!.!. yAsnValThrIleArgProLeuThrTyrProGlyTyrGluGluPhePheAspValGln 290190 : TAACGTGACTATCAGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAG : 290246 174 : ProSerProGlnPheGluLeuThrPheIlePheGlnAlaIleThrIlePheLeuAlaA : 193 !|||||| !!:!|||:!!..!||| !.!.!!...!:!! !:!!.!.:!!.!!| LysSerProAlaTyrGluIleValPheCysMetHisCysValTyrValMetIleThrA 290247 : AAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGG : 290306 194 : laThrSerTyrThrSerValAspAlaLeuLeuGlyLeuValIleLeuHisThrCysGl : 212 ||!.!! ! ! !:!!!.! !!::!||| ! !:!! !! ! !||||||||||| laAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGl 290307 : CGAACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGG : 290363 213 : yGlnLeuGlu : 215 ||||:!!:!! yGlnIleLys 290364 : TCAGATTAAG : 290374 vulgar: CbirOr92NTE 2 215 . KQ414889.1 289735 290374 + 110 M 17 51 G 0 3 M 103 309 G 0 3 M 24 72 G 3 0 M 18 54 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289736 290374 110 + . gene_id 6 ; sequence CbirOr92NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289736 290374 . + . KQ414889.1 exonerate:protein2genome:local exon 289736 290374 . + . insertions 9 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 289736 290374 110 + . alignment_id 6 ; Query CbirOr92NTE ; Align 289736 3 51 ; Align 289790 20 309 ; Align 290102 123 72 ; Align 290174 150 54 ; Align 290231 168 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr92NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 320 -> 371 Target range: 264723 -> 264876 321 : HisCysAsnArgValTyrGlnAlaIleTyrAsnLeuGluTrpTyrLysLeuGluAlaA : 340 !!.|||!!.!:!||| !:!!!.!:!!|||! ! !.!.|||||| ! ||| !! GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 341 : rgLysAlaArgAsnLeuValLeuLeuMetIleArgAlaSerGluProPheArgIleTh : 359 :! ! !! !:!!|||:!!|||:!!!!::!!|||:!!|||! ! !|||!:!.!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 360 : rAlaGlyLysValIleProLeuThrMetAlaThrPhe : 371 ||||||||||:!!:!!! !:!!:!!||| !|||||| rAlaGlyLysIleLeuHisMetSerMetTyrThrPhe 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTC : 264876 vulgar: CbirOr92NTE 320 371 . KQ414889.1 264723 264876 + 106 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 264876 106 + . gene_id 7 ; sequence CbirOr92NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264724 264876 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264876 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 264876 106 + . alignment_id 7 ; Query CbirOr92NTE ; Align 264724 321 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr92NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 320 -> 371 Target range: 273014 -> 273167 321 : HisCysAsnArgValTyrGlnAlaIleTyrAsnLeuGluTrpTyrLysLeuGluAlaA : 340 ...|||...:::::: :!!!.!:!!|||! !.!.|||||| ! ||| !.!! GlnCysLysLysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProGlyL 273015 : cagtgtaaaaaaattggcGAGGTAGTTTACATGACGAACTGGTACTATTTACCCGGCA : 273072 341 : rgLysAlaArgAsnLeuValLeuLeuMetIleArgAlaSerGluProPheArgIleTh : 359 :! ! !! !:!!|||:!!|||:!!!!: !|||..!|||! !.!!!:!||||| ysAspIleLeuAspLeuIleLeuIleIleSerArgCysSerValValIleLysIleTh 273073 : AAGATATCCTCGATCTGATTTTGATCATCTCAAGATGCAGTGTTGTGATTAAAATCAC : 273129 360 : rAlaGlyLysValIleProLeuThrMetAlaThrPhe : 371 |||||||!:!:!!:!!|||:!!:!!:!! !|||||| rAlaGlyArgIleValProMetSerValTyrThrPhe 273130 : CGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTC : 273167 vulgar: CbirOr92NTE 320 371 . KQ414889.1 273014 273167 + 104 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 273015 273167 104 + . gene_id 8 ; sequence CbirOr92NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 273015 273167 . + . KQ414889.1 exonerate:protein2genome:local exon 273015 273167 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 273015 273167 104 + . alignment_id 8 ; Query CbirOr92NTE ; Align 273015 321 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr92NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 320 -> 377 Target range: 238625 -> 238796 321 : HisCysAsnArgValTyrGlnAlaIleTyrAsnLeuGluTrpTyrLysLeuGluAlaA : 340 !!.||| !:!||| !:!!!.!:!!|||! !!!:|||||| ! ||| ! !| GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 341 : rgLysAlaArgAsnLeuValLeuLeuMetIleArgAlaSerGluProPheArgIleTh : 359 ||!:! !! !:!!|||:!!|||:!!!!:! !|||:!!!:!! ! ! !!!:!:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 360 : rAlaGlyLysValIleProLeuThrMetAlaThrPheCysSerLeuLeuLysThr : 377 |||||||||||||:!!! !:!!:!!:!: !|||||| !!..!:!! !:!!||| rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThr 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 238796 vulgar: CbirOr92NTE 320 377 . KQ414889.1 238625 238796 + 101 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238796 101 + . gene_id 9 ; sequence CbirOr92NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238796 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238796 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238796 101 + . alignment_id 9 ; Query CbirOr92NTE ; Align 238626 321 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr92NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 320 -> 377 Target range: 244655 -> 244826 321 : HisCysAsnArgValTyrGlnAlaIleTyrAsnLeuGluTrpTyrLysLeuGluAlaA : 340 !!.||| !:!||| !:!!!.!:!!|||! !!!:|||||| ! ||| ! !| GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 341 : rgLysAlaArgAsnLeuValLeuLeuMetIleArgAlaSerGluProPheArgIleTh : 359 ||!:! !! !:!!|||:!!|||:!!!!:! !|||:!!!:! ! ! !!..!||||| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 360 : rAlaGlyLysValIleProLeuThrMetAlaThrPheCysSerLeuLeuLysThr : 377 |||||||||||||:!!! !:!!:!!:!: !|||||| !!..!:!! !:!!||| rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThr 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 244826 vulgar: CbirOr92NTE 320 377 . KQ414889.1 244655 244826 + 100 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244826 100 + . gene_id 10 ; sequence CbirOr92NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244826 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244826 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244826 100 + . alignment_id 10 ; Query CbirOr92NTE ; Align 244656 321 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr92NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 318 -> 371 Target range: 277545 -> 277704 319 : IleGluHisCysAsnArgValTyrGlnAlaIleTyrAsnLeuGluTrpTyrLysLeuG : 338 .!!..!!!.|||!!.!:!||| !:!!!.!:!!|||! !.!.|||||| ! ||| PheArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuP 277546 : TTCCGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTAC : 277603 339 : luAlaArgLysAlaArgAsnLeuValLeuLeuMetIleArgAlaSerGluProPheAr : 357 ! !!:! ! !! !||||||:!!|||:!!!!: !|||:!!||| ...:: roAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLy 277604 : CCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaa : 277660 358 : gIleThrAlaGlyLysValIleProLeuThrMetAlaThrPhe : 371 :|||||||||||||||:::||| ::::!!:!! !|||||| sIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277661 : aattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277704 vulgar: CbirOr92NTE 318 371 . KQ414889.1 277545 277704 + 100 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277546 277704 100 + . gene_id 11 ; sequence CbirOr92NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277546 277704 . + . KQ414889.1 exonerate:protein2genome:local exon 277546 277704 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277546 277704 100 + . alignment_id 11 ; Query CbirOr92NTE ; Align 277546 319 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr94PNC Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 324 -> 371 Target range: 292401 -> 292542 325 : ValTyrHisAlaIleTyrAspLeuGluTrpTyrLysLeuGluSerArgLysSerArgA : 344 :!! |||||| !|||||| !|||||||||!!.||| !!!!||||||:!!|||: IleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgArgLysAlaArgA 292402 : ATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGGCTCGTG : 292459 345 : snLeuIleLeuLeuMetIleArgAlaGlyGluProPheArgIleThrAlaGlyLysVa : 363 !!:!!:!!|||:!!:!: !! !.!! !.!.|||.!!!:!:!!||||||||||||:! spIleValLeuValLeuAlaIleThrLysHisProIleLysLeuThrAlaGlyLysIl 292460 : ACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGGCAAAAT : 292516 364 : lIleProLeuThrLeuThrThrPhe : 371 !.!! !|||:!!|||!.!|||||| ePheValLeuSerLeuAsnThrPhe 292517 : ATTCGTTCTCTCGTTGAACACTTTT : 292542 vulgar: CbirOr94PNC 324 371 . KQ414889.1 292401 292542 + 123 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292402 292542 123 + . gene_id 1 ; sequence CbirOr94PNC ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292402 292542 . + . KQ414889.1 exonerate:protein2genome:local exon 292402 292542 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292402 292542 123 + . alignment_id 1 ; Query CbirOr94PNC ; Align 292402 325 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr94PNC Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 321 -> 373 Target range: 301877 -> 302033 322 : CysAspAlaValTyrHisAlaIleTyrAspLeuGluTrpTyrLysLeuGluSerArgL : 341 |||..! !:!! ! ||| |||!!::!!!!:||||||!!.||| !:!!!:!! CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysA 301878 : TGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGA : 301935 342 : ysSerArgAsnLeuIleLeuLeuMetIleArgAlaGlyGluProPheArgIleThrAl : 360 :!:!! !:!!||||||||||||! :!:! !:!! ! ! ||| !:!:!!||||| rgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAl 301936 : GAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGC : 301992 361 : aGlyLysValIleProLeuThrLeuThrThrPheCysSer : 373 |||||||:!!||| !|||:!!|||!.!|||||| !!||| aGlyLysIleIleAspLeuSerLeuAsnThrPheSerSer 301993 : AGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCT : 302033 vulgar: CbirOr94PNC 321 373 . KQ414889.1 301877 302033 + 116 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301878 302033 116 + . gene_id 2 ; sequence CbirOr94PNC ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301878 302033 116 + . alignment_id 2 ; Query CbirOr94PNC ; Align 301878 322 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr94PNC Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 321 -> 373 Target range: 280276 -> 280432 322 : CysAspAlaValTyrHisAlaIleTyrAspLeuGluTrpTyrLysLeuGluSerArgL : 341 ||| !||| ! :!!! !||| :!!!!:||||||:::||| !.!!!:!| CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysL 280277 : TGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGA : 280334 342 : ysSerArgAsnLeuIleLeuLeuMetIleArgAlaGlyGluProPheArgIleThrAl : 360 ||:!!!:!..!|||||||||:!!.!. ! !:!!..!... !!.!.!:!:!!||||| ysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 280335 : AAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 280391 361 : aGlyLysValIleProLeuThrLeuThrThrPheCysSer : 373 |||||||:!!||| !|||:!!|||!:!!:!||||||||| aGlyLysIleIleAspLeuSerLeuSerSerPheCysSer 280392 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGC : 280432 vulgar: CbirOr94PNC 321 373 . KQ414889.1 280276 280432 + 112 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280277 280432 112 + . gene_id 3 ; sequence CbirOr94PNC ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280277 280432 112 + . alignment_id 3 ; Query CbirOr94PNC ; Align 280277 322 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr94PNC Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 321 -> 373 Target range: 287063 -> 287219 322 : CysAspAlaValTyrHisAlaIleTyrAspLeuGluTrpTyrLysLeuGluSerArgL : 341 ||| !||| ! :!!! !||| :!!!!:||||||:::||| !.!!!:!! CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysT 287064 : tGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAA : 287121 342 : ysSerArgAsnLeuIleLeuLeuMetIleArgAlaGlyGluProPheArgIleThrAl : 360 !:!!!:!..!|||||||||:!!.!. ! !:!!..!... !!.!.!:!:!!||||| hrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 287122 : CAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 287178 361 : aGlyLysValIleProLeuThrLeuThrThrPheCysSer : 373 |||||||:!!||| !|||:!!|||!:!!:!||||||||| aGlyLysIleIleAspLeuSerLeuSerSerPheCysSer 287179 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGC : 287219 vulgar: CbirOr94PNC 321 373 . KQ414889.1 287063 287219 + 106 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287064 287219 106 + . gene_id 4 ; sequence CbirOr94PNC ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287064 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287064 287219 106 + . alignment_id 4 ; Query CbirOr94PNC ; Align 287064 322 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr94PNC Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 318 -> 371 Target range: 234979 -> 235138 319 : ThrGlnHisCysAspAlaValTyrHisAlaIleTyrAspLeuGluTrpTyrLysLeuG : 338 ||||||!!.||| ! !||| .!. !:!:||| !|||||||||::!||| ThrGlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuP 234980 : ACTCAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTAC : 235037 339 : luSerArgLysSerArgAsnLeuIleLeuLeuMetIleArgAlaGlyGluProPheAr : 357 !!:!! :!!! !..!|||:!!:!!:!!!!: !|||:!!.!! ! !.!.!: roHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLy 235038 : CTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAA : 235094 358 : gIleThrAlaGlyLysValIleProLeuThrLeuThrThrPhe : 371 !||||||||||||||| !!:!!! !:!!:!!:!!.!!|||||| sIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPhe 235095 : AATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTT : 235138 vulgar: CbirOr94PNC 318 371 . KQ414889.1 234979 235138 + 103 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234980 235138 103 + . gene_id 5 ; sequence CbirOr94PNC ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234980 235138 . + . KQ414889.1 exonerate:protein2genome:local exon 234980 235138 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234980 235138 103 + . alignment_id 5 ; Query CbirOr94PNC ; Align 234980 319 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr107NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 184 Query range: 1 -> 224 Target range: 232453 -> 233125 2 : TyrGluTrpAlaIleGluPheAsnArgValSerLeuThrLeuPheGlyValTrpProI : 21 ||||||!::::!|||:!! ! |||||| !! !||||||! !.!.|||!.!|||||| TyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProA 232454 : TACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGC : 232511 22 : leAsnAsnGluThrLysGlnLysLysLeuMetSerAspIleArgValIleIleThrLe : 40 ! !!..||||||..!::! :!!! !:!: !! ! !! !:!!! !:!!|||! rgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCy 232512 : GTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTG : 232568 41 : uAsnValValIleTrpIleCysValIleProThrLeuHisSerLeuLeuLysIleTyr : 59 !:!! !:!!!!: !! :!!:!!||| !:!!! ! !:!!||| ! !! sHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAsp 232569 : TCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGAC : 232625 60 : AspAspIleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuIleAlaV : 79 ..!:!! !..!! !!!: ! ::!:!! !! ! !! !!!!|||!!:!.!! ThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyG 232626 : ACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTG : 232685 80 : alIleLysLeuPheIleIleTrpGlnLysLysTyrAspValLeuProLeuLeuAsnMe : 98 !:!:!!.! !! ! !:!:! ! !||| ! !!|||:!!||| !! !:!!.!... luLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGl 232686 : AATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACA : 232742 99 : tIleLysAspAspTrpLeuArgSerLysThrSerGluGluArgAsnValMetIleLys : 117 !:!:|||.!.||||||! !!.! !|||! ! !!! .!.|||:!!:!!|||:!:||| nValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLys 232743 : GGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAG : 232799 118 : GlnAlaArgIleAlaArgIleLeuThrIlePheGlyCysPheValThrGlnThrAlaA : 137 .!.|||!:!:!!!.!||| :!!.!! !.!!!.!...||| !! !!!.|||!.!! AsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyV 232800 : AACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTG : 232859 138 : laIleIleIleLeuLeuLeuSerValCysGlyIleSerMetArgTyrArgThrAsnAr : 156 .! ! ! ! !:!!:!!!!!! ! ! !!!!:|||! ! !||| ! !|||.. alGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGl 232860 : TCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGA : 232916 157 : gThrAspSerAspLysLeuLeuProLeuProSerTyr<->TyrIleTyrAspValSer : 174 !!:! !!||| ! ! !||||||! ! !!! !||| ! :!: |||..!!!! uSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArg 232917 : GAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGA : 232973 175 : AsnSerProLeuTyrGluValIlePheValLeuGlnSerPheSerPheMetIleAlaG : 194 !|||||| ! !!|||:!!!!:||||||||||||!!!.!!||| .!.|||!.!. PheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValA 232974 : TTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGA : 233033 195 : lyMetMetTyrThrGlyThrAspThrPheMetSerLeuLeuIlePheHisValCysGl : 213 .! :!: !..!|||.!! ! !!!. :!!:!!||| .!.|||!.!||||| snSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGl 233034 : ACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGG : 233090 214 : yGlnLeuGluAsnLeuLysAlaArgIleSerAsn : 224 |||||||.!. :!!! !:!!!:!:!:..!:!! yGlnLeuAsnValValMetSerLysLeuAspAsp 233091 : ACAGCTGAACGTGGTGATGTCGAAATTGGACGAT : 233125 vulgar: CbirOr107NTE 1 224 . KQ414889.1 232453 233125 + 184 M 167 501 G 0 3 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232454 233125 184 + . gene_id 1 ; sequence CbirOr107NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232454 233125 . + . KQ414889.1 exonerate:protein2genome:local exon 232454 233125 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232454 233125 184 + . alignment_id 1 ; Query CbirOr107NTE ; Align 232454 2 501 ; Align 232958 169 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr107NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 2 -> 225 Target range: 259769 -> 260441 3 : GluTrpAlaIleGluPheAsnArgValSerLeuThrLeuPheGlyValTrpProIleA : 22 !!:!::::!:!!:!!||||||||| !! !|||! !! !.!.|||!.!|||||| !: AspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS 259770 : GACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTT : 259827 23 : snAsnGluThrLysGlnLysLysLeuMetSerAspIleArgValIleIleThrLeuAs : 41 ::::!...|||! ::! :!! !!!:! !..!:!!! !:!!|||.!!! !! ! ! erSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTy 259828 : CATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTA : 259884 42 : nValValIleTrpIleCysValIleProThrLeuHisSerLeuLeuLysIleTyrAsp : 60 ! !..!||| !:!! !:!!|||||| !:!!! ! !:!!||| ! !!: rSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGlu 259885 : CAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAG : 259941 61 : AspIleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuIleAlaValI : 80 ..!:!: ! !! !! ! ||| ! ! !! !! !!!!:!!!.! !| SerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysI 259942 : AGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTA : 260001 81 : leLysLeuPheIleIleTrpGlnLysLysTyrAspValLeuProLeuLeuAsnMetIl : 99 ||!!.! ! ! :!:! ! !!:! |||:!!||| !! !:!!.!. :! leAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisVa 260002 : TTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGT : 260058 100 : eLysAspAspTrpLeuArgSerLysThrSerGluGluArgAsnValMetIleLysGln : 118 ::!!:!!|||||| !! !! !! !! !..!:!!!!:!:!|||||||||:!:!:! ! lGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyr 260059 : GGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATAC : 260115 119 : AlaArgIleAlaArgIleLeuThrIlePheGlyCysPheValThrGlnThrAlaAlaI : 138 |||!:!.!!!.!||| !:!!.!! !! ! !!... ! !!..!||| !!.!!.!: AlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValL 260116 : GCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTC : 260175 139 : leIleIleLeuLeuLeuSerValCysGlyIleSerMetArgTyrArgThrAsnArgTh : 157 !: !.!!! !|||:!!!!!|||! .!!! !..!:!!! ! ! ! !|||..!|| euCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluTh 260176 : TGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGAC : 260232 158 : rAspSerAspLysLeuLeuProLeuProSerTyr<->TyrIleTyrAspValSerAsn : 175 | ! !! ! ! |||||||||! ! !! !||| ! :!: :!!|||!:!:!! rArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAsp 260233 : GAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGAC : 260289 176 : SerProLeuTyrGluValIlePheValLeuGlnSerPheSerPheMetIleAlaGlyM : 195 ||||||:!! !!|||:!!:!!.!!|||:!!|||! ! !!||| .!.|||!.!..! SerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnS 260290 : AGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATT : 260349 196 : etMetTyrThrGlyThrAspThrPheMetSerLeuLeuIlePheHisValCysGlyGl : 214 !! !..!|||! ! !!:!.!! !:!!:!!|||! ! !|||!.!|||||||| erSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGl 260350 : CGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCA : 260406 215 : nLeuGluAsnLeuLysAlaArgIleSerAsnPhe : 225 ||||.!. |||! !! ! !!|||!!!.!.||| nLeuAsnValLeuMetGluTrpIleThrGluPhe 260407 : GTTGAACGTGCTCATGGAATGGATCACGGAGTTT : 260441 vulgar: CbirOr107NTE 2 225 . KQ414889.1 259769 260441 + 175 M 166 498 G 0 3 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259770 260441 175 + . gene_id 2 ; sequence CbirOr107NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259770 260441 . + . KQ414889.1 exonerate:protein2genome:local exon 259770 260441 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259770 260441 175 + . alignment_id 2 ; Query CbirOr107NTE ; Align 259770 3 498 ; Align 260271 169 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr107NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 2 -> 225 Target range: 266634 -> 267306 3 : GluTrpAlaIleGluPheAsnArgValSerLeuThrLeuPheGlyValTrpProIleA : 22 !!:!::::!:!::!!!!.|||||| !! !|||! !! !.!.|||!.!|||||| AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProL 266635 : GATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGT : 266692 23 : snAsnGluThrLysGlnLysLysLeuMetSerAspIleArgValIleIleThrLeuAs : 41 ::: |||...:!! :!!! !!!: !..! ! !:!!|||:!!! !! ! ! euSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266693 : TGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 42 : nValValIleTrpIleCysValIleProThrLeuHisSerLeuLeuLysIleTyrAsp : 60 ! ! !||| !.!! !||||||||| !||| ! !|||:!! ! !!!!: rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 61 : AspIleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuIleAlaValI : 80 ..!||| !!!! !:!: ! !!! ! ! !! !! !!!!:!!!.!! !| SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 81 : leLysLeuPheIleIleTrpGlnLysLysTyrAspValLeuProLeuLeuAsnMetIl : 99 ||!!.! ! !! !:!:! !! !:::!.. ! !!::!!! ! !! !:!!.!. !! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 100 : eLysAspAspTrpLeuArgSerLysThrSerGluGluArgAsnValMetIleLysGln : 118 ::!! |||||| !! ! !! ! ! !!|||!!:!:!.!.||||||:!:|||.!. tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 119 : AlaArgIleAlaArgIleLeuThrIlePheGlyCysPheValThrGlnThrAlaAlaI : 138 |||||||||!.!||| !:!!.!!|||||| !!... !!! !||| !!.!!.!: AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 139 : leIleIleLeuLeuLeuSerValCysGlyIleSerMetArgTyrArgThrAsnArgTh : 157 !! ! !! !:!!:!!!!!!.!! ! !!!:..!! ! ! ! !|||..!|| euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 158 : rAspSerAspLysLeuLeuProLeuProSerTyr<->TyrIleTyrAspValSerAsn : 175 | ! !! ! |||||||||! ! !! !||| ! !!: !! |||..!!.! rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 176 : SerProLeuTyrGluValIlePheValLeuGlnSerPheSerPheMetIleAlaGlyM : 195 |||||| ! !!|||:!!:!!.!!|||! !|||! ! ! ||| .!.|||!.!..! SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 196 : etMetTyrThrGlyThrAspThrPheMetSerLeuLeuIlePheHisValCysGlyGl : 214 !! !..!|||.!! !!:!.!! :!!:!!!!! !|||!.!|||||||| erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 215 : nLeuGluAsnLeuLysAlaArgIleSerAsnPhe : 225 ||||... |||! ! ! !!|||!.!.!.||| nLeuSerValLeuMetMetTrpIleLysGluPhe 267272 : GCTGAGCGTGCTGATGATGTGGATCAAGGAGTTT : 267306 vulgar: CbirOr107NTE 2 225 . KQ414889.1 266634 267306 + 148 M 166 498 G 0 3 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266635 267306 148 + . gene_id 3 ; sequence CbirOr107NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266635 267306 . + . KQ414889.1 exonerate:protein2genome:local exon 266635 267306 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266635 267306 148 + . alignment_id 3 ; Query CbirOr107NTE ; Align 266635 3 498 ; Align 267136 169 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr107NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 5 -> 218 Target range: 208218 -> 208860 6 : IleGluPheAsnArgValSerLeuThrLeuPheGlyValTrpProIleAsnAsnGluT : 25 :!!....!.||| ! !!!!|||! !:!!.!!||| !||||||! !::!! !!: ValArgLeuAsnValTrpThrLeuLysIleIleGlySerTrpProArgSerIleAspA 208219 : GTTCGTCTGAACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATC : 208276 26 : hrLysGlnLysLysLeuMetSerAspIleArgValIleIleThrLeuAsnValValIl : 44 !... ! !:!! !! ..! !!|||! !:!!! !:!! ! !:!! !:!!:! rgSerTrpLeuGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLe 208277 : GTTCCTGGTTAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCT : 208333 45 : eTrpIleCysValIleProThrLeuHisSerLeuLeuLysIleTyrAspAspIleMet : 63 ! ! .!! !|||||||||||| ! ! ! !:!! :!! !!!:|||.!! uGlyPheIleValIleProThrGlyMetPheAlaIleLeuValValGluAspPheTyr 208334 : CGGTTTCATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTAC : 208390 64 : SerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuIleAlaValIleLysLeuP : 83 ..! !:!! ! ! !! !... ! ! ! !!!!:!!!!:||| !!! |||! ! AspGlnLeuLysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrV 208391 : GACCAATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACG : 208450 84 : heIleIleTrpGlnLysLysTyrAspValLeuProLeuLeuAsnMetIleLysAspAs : 102 ! |||!!: ::::!! !|||:!!! ! !! !:!!.!. :!!:!!! !|| alIleMetThrValArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAs 208451 : TGATCATGACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGA : 208507 103 : pTrpLeuArgSerLysThrSerGluGluArgAsnValMetIleLysGlnAlaArgIle : 121 |||| !!.! !:!! !..!|||!!:|||!!.:!!|||:!: ! .!.|||!!!.!! pTrpArgAsnValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPhe 208508 : TTGGAGAAACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTC : 208564 122 : AlaArg<->IleLeuThrIlePheGlyCysPheValThrGlnThrAlaAlaIleIleI : 140 |||||| :!::!!..!|||! !|||..!|||:!! ! ! ... ... AlaArgLysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrT 208565 : GCCAGGAAACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctatt : 208624 141 : leLeuLeuLeuSerValCysGlyIleSerMetArgTyrArgThrAsnArgThrAspSe : 159 :!! !||| !!:!! ! !! !!.!:!: ! ! ..! !..!!.! ! ! yrIleAlaLeuProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTy 208625 : acaTCGCTTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTA : 208681 160 : rAspLysLeuLeuProLeuProSerTyrTyrIleTyrAspValSerAsnSerProLeu : 178 ! !:!|||:!! !! ! ! !! ! !:!||| |||||| !! !!||||||:!! rArgArgLeuValTyrProValProLysPheIleLeuAspValArgTyrSerProVal 208682 : CAGAAGGCTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTG : 208738 179 : TyrGluValIlePheValLeuGlnSerPheSerPheMetIleAlaGlyMetMetTyrT : 198 !!|||:!!.!!!:!..!:!!|||! !!!.||| !.!.:!!||| !! !!: . AsnGluIlePheTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrV 208739 : AATGAGATTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGG : 208798 199 : hrGlyThrAspThrPheMetSerLeuLeuIlePheHisValCysGlyGlnLeuGluAs : 217 .!|||.!! ! !!!. :!!|||||| .!.|||!.!||||||||||||:!!! alGlyAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIl 208799 : TTGGGGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGAT : 208855 218 : nLeu : 218 !||| eLeu 208856 : TTTG : 208860 vulgar: CbirOr107NTE 5 218 . KQ414889.1 208218 208860 + 146 M 118 354 G 0 3 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208219 208860 146 + . gene_id 4 ; sequence CbirOr107NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208219 208860 . + . KQ414889.1 exonerate:protein2genome:local exon 208219 208860 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208219 208860 146 + . alignment_id 4 ; Query CbirOr107NTE ; Align 208219 6 354 ; Align 208576 124 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr107NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 2 -> 225 Target range: 262846 -> 263518 3 : GluTrpAlaIleGluPheAsnArgValSerLeuThrLeuPheGlyValTrpProIleA : 22 !!:!::::!:!::!!.!.|||||| ! !|||! !! !.!!|||!.!||||||:!:: AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 23 : snAsnGluThrLysGlnLysLysLeuMetSerAspIleArgValIleIleThrLeuAs : 41 :! !..!! !..!::!! !:!!! !!!:! ! .!!! !:!!|||:!!..!! ! ! erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 42 : nValValIleTrpIleCysValIleProThrLeuHisSerLeuLeuLysIleTyrAsp : 60 ! !:!!||| ! !|||||||||:!!:!!! ! !:!!:!! ! ! !!!: rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 61 : AspIleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuIleAlaValI : 80 :!!.!! ! !! !:!:.!. !||| ! !! !! !!!!:!!!.!:!!| AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 81 : leLysLeuPheIleIleTrpGlnLysLysTyrAspValLeuProLeuLeuAsnMetIl : 99 ||!!.! ! ! :!:! !! ! !.. ! |||:!!! ! !! !:!!.!. :! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 100 : eLysAspAspTrpLeuArgSerLysThrSerGluGluArgAsnValMetIleLysGln : 118 ::!!!!:||||||! !! ! !! ! !! !|||!!:!:!..!:!!|||:!:|||.!. lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 119 : AlaArgIleAlaArgIleLeuThrIlePheGlyCysPheValThrGlnThrAlaAlaI : 138 |||!:! !!.!||| !:!!.!! !! ! !!....!! !!! !||||||::! !! AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 139 : leIleIleLeuLeuLeuSerValCysGlyIleSerMetArgTyrArgThrAsnArgTh : 157 !: !! ! !|||:!!!!!!.!! ! !! !..!:!!! ! ! ! !|||..!|| etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 158 : rAspSerAspLysLeuLeuProLeuProSerTyr<->TyrIleTyrAspValSerAsn : 175 | ! ! ::::!!||||||! !||| !||| ! ||| ! |||..!!.. rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 176 : SerProLeuTyrGluValIlePheValLeuGlnSerPheSerPheMetIleAlaGlyM : 195 !:!||| ! !!|||:!!.!!.!!!.! !|||! !.!.||| !.!.|||!.! ! AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 196 : etMetTyrThrGlyThrAspThrPheMetSerLeuLeuIlePheHisValCysGlyGl : 214 !! !..!|||.!! ! !.!.! :!!:!!!!! ! !|||!.!|||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 215 : nLeuGluAsnLeuLysAlaArgIleSerAsnPhe : 225 ||||.!. |||! !:!! !!|||!!!.!.||| nLeuAsnValLeuMetSerTrpIleThrGluPhe 263484 : GTTGAACGTGTTGATGTCCTGGATCACGGAATTC : 263518 vulgar: CbirOr107NTE 2 225 . KQ414889.1 262846 263518 + 139 M 166 498 G 0 3 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 263518 139 + . gene_id 5 ; sequence CbirOr107NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262847 263518 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263518 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262847 263518 139 + . alignment_id 5 ; Query CbirOr107NTE ; Align 262847 3 498 ; Align 263348 169 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr107NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 1 -> 222 Target range: 278570 -> 279245 2 : TyrGluTrpAlaIleGluPheAsnArgValSerLeuThrLeuPheGlyValTrpProI : 21 !:: !!::::!:!!:!!.!.|||||| !! !|||! !! !.!!||||||||||||: TrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProL 278571 : TGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTC : 278628 22 : leAsn<->AsnGluThrLysGlnLysLysLeuMetSerAspIleArgValIleIleTh : 39 !!!:! !! !|||! !:!!|||:!!! |||! :!!! !!.!:!!|||!: euSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSe 278629 : TCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAG : 278685 40 : rLeuAsnValValIleTrpIleCysValIleProThrLeuHisSerLeuLeuLysIle : 58 !! ! !:!!:!! !!:::!!! ||| !.!!||| !!!!:!!||| ! ! ! rCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLys 278686 : TTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAA : 278742 59 : TyrAspAspIleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuIleA : 78 !! !|||:!! !!!! !||| ! ! :!! ! ! ! !! ! !!!:| ThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetA 278743 : ACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGG : 278802 79 : laValIleLysLeuPheIleIleTrpGlnLysLysTyrAspValLeuProLeuLeuAs : 97 ||..!||||||! !!:!|||:!! !..!::: ! ! :!! ! !! !:!!|| laThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAs 278803 : CAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAA : 278859 98 : nMetIleLysAspAspTrp<-><-><->LeuArgSerLysThrSerGluGluArgAsn : 113 | |||::: |||||| ||| !! !::: ...|||||||||... nAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGlu 278860 : TGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagag : 278916 114 : ValMetIleLysGlnAlaArgIleAlaArgIleLeuThrIlePheGlyCys<->PheV : 132 :::|||! ! ...|||||||||!.!||| !|||.!!||||||.!!..! |||: IleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheM 278917 : atcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCA : 278976 133 : alThrGlnThrAlaAlaIleIleIleLeuLeuLeuSerValCysGlyIleSerMetAr : 151 !! !... !!.!!.!.!! !! ! !:!!:!! !!:!!! !!.!:!! !!! !.. etTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGl 278977 : TGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGA : 279033 152 : gTyrArgThrAsnArgThrAspSerAspLysLeuLeuProLeuProSerTyrTyrIle : 170 ! !! ! !|||..!|||! !!!..!:!! !!!!|||:!! ! ! ! !:!! uIleIleAspAsnGluThrValArgSerGlnAlaPheProIle---TyrArgGlyLeu 279034 : GATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATC---TATCGCGGCCTC : 279087 171 : TyrAspValSerAsnSerProLeuTyrGluValIlePheValLeuGlnSerPheSerP : 190 !||| ! !!!.!||||||! !!:!|||:!!:!: !!:!!|||!!!!!.:!! LeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaA 279088 : CTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCG : 279147 191 : heMetIleAlaGlyMetMetTyrThrGlyThrAspThrPheMetSerLeuLeuIlePh : 209 .!.:!! ! ! !:!: !..!|||.!! !!:!!!.!!::!!:!!!!!:!!.! laPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMe 279148 : CGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCAT : 279204 210 : eHisValCysGlyGlnLeuGluAsnLeuLysAlaArgIle : 222 .|||||||||||||||!!!..!! ||| !.!!!:!:!: tHisValCysGlyGlnPheArgIleLeuValThrLysLeu 279205 : GCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTG : 279245 vulgar: CbirOr107NTE 1 222 . KQ414889.1 278570 279245 + 127 M 21 63 G 0 3 M 81 243 G 0 9 M 27 81 G 0 3 M 35 105 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278571 279245 127 + . gene_id 6 ; sequence CbirOr107NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278571 279245 . + . KQ414889.1 exonerate:protein2genome:local exon 278571 279245 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278571 279245 127 + . alignment_id 6 ; Query CbirOr107NTE ; Align 278571 2 63 ; Align 278637 23 243 ; Align 278889 104 81 ; Align 278973 131 105 ; Align 279078 167 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr107NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 1 -> 222 Target range: 284517 -> 286195 2 : TyrGluTrpAlaIleGluPheAsnArgValSerLeuThrLeuPheGlyValTrpProI : 21 !:: !!::::!:!!:!!.!.|||||| !! !|||! !! !.!!||||||||||||: TrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProL 284518 : TGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTC : 284575 22 : leAsn<->AsnGluThrLysGlnLysLysLeuMetSerAspIleArgValIleIleTh : 39 !!!:! !! !|||! !:!!|||:!!! |||! :!!! !!.!:!!|||!: euSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSe 284576 : TCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAG : 284632 40 : rLeuAsnValValIleTrpIleCysValIleProThrLeuHisSerLeuLeuLysIle : 58 !! ! !:!!:!! !!:::!!! ||| !.!!||| !!!!:!!||| ! ! ! rCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLys 284633 : TTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAA : 284689 59 : TyrAspAspIleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuIleA : 78 !! !|||:!! !!!! !||| ! ! :!! ! ! ! !! !:!!!!:| ThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetA 284690 : ACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGG : 284749 79 : laValIleLysLeuPheIleIleTrpGlnLysLysTyrAspValLeuProLeuLeuAs : 97 ||!.!||||||! !!:!|||:!! ..!::: ! ! :!! !! !! !:!!!! laAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLy 284750 : CAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAA : 284806 98 : nMetIleLysAspAsp{Tr} >>>> Target Intron 1 >>>> {p}LeuArg : 105 . |||:::! |||{||} 1012 bp {|}||| ! sAspIleArgAlaAsp{Tr}++ +-{p}LeuSer 284807 : GGACATTCGTGCGGAC{TG}gt.........................ac{G}CTTTCG : 285842 106 : SerLysThrSerGluGluArgAsnValMetIleLysGlnAlaArgIleAlaArgIleL : 125 !!.. ...|||||||||...:::|||! ! ...|||||||||!.!||| !| HisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerL 285843 : CATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTT : 285902 126 : euThrIlePhe<->GlyCysPheValThrGlnThrAlaAlaIleIleIleLeuLeuLe : 143 ||.!!|||||| !.! !!|||:!! !... !!.! !.!! !! ! !:!!:! euAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMe 285903 : TGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGAT : 285959 144 : uSerValCysGlyIleSerMetArgTyrArgThrAsnArgThrAspSerAspLysLeu : 162 ! !!:!!||| !:!! !!! !..! !! ! !|||..!|||! !!!..!:!! ! tProLeuCysThrValArgThrGluIleIleAspAsnGluThrValArgSerGlnAla 285960 : GCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCG : 286016 163 : LeuProLeuProSerTyrTyrIleTyrAspValSerAsnSerProLeuTyrGluValI : 182 !!!|||:!! ! ! ! !:!! !||| ! !!!.!||||||! !!:!|||:!!: PheProIle---TyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleV 286017 : TTCCCGATC---TATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCG : 286073 183 : lePheValLeuGlnSerPheSerPheMetIleAlaGlyMetMetTyrThrGlyThrAs : 201 !: !!:!!|||!!!!!.:!! .!.:!! ! ! !:!: !..!|||.!! alGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCy 286074 : TGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTG : 286130 202 : pThrPheMetSerLeuLeuIlePheHisValCysGlyGlnLeuGluAsnLeuLysAla : 220 !!:!!!. :!!:!!!!!:!!.!.|||||||||||||||!!!..!! ||| !.!! sSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThr 286131 : CAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACA : 286187 221 : ArgIle : 222 !:!:!: LysLeu 286188 : AAGCTG : 286195 vulgar: CbirOr107NTE 1 222 . KQ414889.1 284517 286195 + 125 M 21 63 G 0 3 M 80 240 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 25 75 G 0 3 M 37 111 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284518 286195 125 + . gene_id 7 ; sequence CbirOr107NTE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284518 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284518 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286195 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286195 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284518 286195 125 + . alignment_id 7 ; Query CbirOr107NTE ; Align 284518 2 63 ; Align 284584 23 240 ; Align 285839 104 75 ; Align 285917 129 111 ; Align 286028 167 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr107NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 4 -> 218 Target range: 226933 -> 227578 5 : AlaIleGluPheAsnArgValSerLeuThrLeuPheGlyValTrpProIleAsnAsnG : 24 ::!|||:!!!!.|||||| ! !|||! !! !.!!|||:!!|||||| :::..!: SerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgL 226934 : AGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCA : 226991 25 : luThrLysGln<->LysLysLeuMetSerAspIleArgValIleIleThrLeuAsnVa : 42 !!!:!...!:! !!:!! !.!.||| :!:! !! !.!!:!! !! ! :! ysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLe 226992 : AAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCT : 227048 43 : lValIleTrpIleCysValIleProThrLeuHisSerLeuLeuLysIleTyrAspAsp : 61 !:!!! !!:: ! ||| ! !|||:!! !:!!|||:!!:!: ! ! ! uMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluVal---LysGly 227049 : GATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTG---AAAGGC : 227102 62 : IleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuIleAlaValIleL : 81 ! !:!|||:!: ! ! :!! ! !! ! !!!! !!!::!!:!!:!!| AlaTyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuL 227103 : GCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCA : 227162 82 : ysLeuPheIleIleTrpGlnLysLysTyrAspValLeuProLeuLeuAsnMetIleLy : 100 ||! !! !!!::!: ! ! :!! !!|||:!!||| !! !:!!.!. !||||| ysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIleLy 227163 : AGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAA : 227219 101 : sAspAspTrpLeuArgSerLysThrSerGluGluArgAsnValMetIleLysGlnAla : 119 | |||||| !!.!! !!:! ! !|||!!:||||||||||||:!:! ! ! ||| sTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyrAla 227220 : ATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCG : 227276 120 : ArgIleAlaArgIleLeuThrIlePheGlyCysPheValThrGlnThrAlaAlaIleI : 139 ! !!.!|||! !|||! !! !.!! !! ||| !!..! !::::: :::. TyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheValP 227277 : TATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtat : 227336 140 : leIleLeuLeuLeuSerValCysGlyIleSerMetArgTyrArgThrAsnArgThrAs : 158 ..... :!!:!! ! ! !..! !.!!! ! ! ! !:!! !!!.! ! hePheTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGlyAsnHi 227337 : ttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCA : 227393 159 : pSerAspLysLeuLeuProLeuPro<->SerTyrTyrIleTyrAspValSerAsnSer : 176 !||| !!! ! !:!!|||!!!||| !! ! !||| !|||||| !! !!||| sSerTyrIleGlnMetProPheProPheProLysIleIleAlaAspValArgTyrSer 227394 : CAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGC : 227450 177 : ProLeuTyrGluValIlePheValLeuGlnSerPheSerPheMetIleAlaGlyMetM : 196 |||!!! !!|||:!!.!!||| !:!!|||! ! ! !!! !!!::!: ! ! : ProPheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuHisGlyV 227451 : CCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTG : 227510 197 : etTyrThrGlyThrAspThrPheMetSerLeuLeuIlePheHisValCysGlyGlnLe : 215 !: :!!!.!.!! !!:!.!. :!!|||||| !!|||!.!|||||||||:! alThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMe 227511 : TCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGAT : 227567 216 : uGluAsnLeu : 218 !||| ||| tGluValLeu 227568 : GGAGGTGTTG : 227578 vulgar: CbirOr107NTE 4 218 . KQ414889.1 226933 227578 + 108 M 23 69 G 0 3 M 31 93 G 1 0 M 107 321 G 0 3 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226934 227578 108 + . gene_id 8 ; sequence CbirOr107NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226934 227578 . + . KQ414889.1 exonerate:protein2genome:local exon 226934 227578 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226934 227578 108 + . alignment_id 8 ; Query CbirOr107NTE ; Align 226934 5 69 ; Align 227006 28 93 ; Align 227099 60 321 ; Align 227423 167 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr107NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 2 -> 222 Target range: 194168 -> 194822 3 : GluTrpAlaIleGluPheAsnArgValSerLeuThrLeuPheGlyValTrpProIleA : 22 |||!::|||:!!..! ! !:!!.! !||||||! !.!!|||:!!|||||| ! GluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpPro---A 194169 : GAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCA---A : 194223 23 : snAsnGluThrLysGlnLysLysLeuMetSerAspIleArgValIleIleThrLeuAs : 41 ...!.!!::!! !:: ! !:!:!! ! ! !!:!..! !:!:..!!!! rgGluAspSerLeuArgAspArgValArgLeuPheAlaGlnThrGlyValValPheAl 194224 : GGGAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTTCGC : 194280 42 : nValValIleTrpIleCysValIleProThrLeuHisSerLeuLeuLysIleTyrAsp : 60 !:!!:!! !!:::!! ||| !! !..!:!!:!!!!!! !!!! ! ! !!: aLeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCys---Glu 194281 : TTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGC---GAG : 194334 61 : AspIleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuIleAlaValI : 80 |||:!:! !!!! !!!: ! :!! ! !:!! ! !|||:!:|||:!!| AspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleI 194335 : GATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCA : 194394 81 : leLysLeuPheIleIleTrpGlnLysLysTyrAspValLeuProLeuLeuAsnMetIl : 99 |||||!!!!::! !!: !!!.!:! ! !!::!! ! !! !||| !!! leLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGluMe 194395 : TCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGAT : 194451 100 : eLysAspAspTrpLeuArgSerLysThrSerGluGluArgAsnValMetIleLysGln : 118 ::!! .!.!:: ! ! !:!! !..!|||!!:|||.!.||||||! !!. tGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsnCys 194452 : GGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGC : 194508 119 : AlaArgIleAlaArgIleLeuThrIlePheGlyCysPheValThrGlnThrAlaAlaI : 138 |||!:!|||!.!|||.!!!!!|||! !.!. !! :!!:!! ! !!.!|||: AlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaL 194509 : GCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTT : 194568 139 : leIleIleLeuLeuLeuSerValCysGlyIleSerMetArgTyrArgThrAsnArgTh : 157 !: !! !:!!:!! ! ! ! ..!! !! ! !!:! !:!!!.!!: euProTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGluAspAsnSe 194569 : TGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAACAG : 194625 158 : rAspSerAspLysLeuLeuProLeuProSerTyrTyrIleTyrAspValSerAsnSer : 176 ! !..! |||! ! !||| !!:!||| !.!!!:!! :!!..!:!!||| rThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAspSer 194626 : TACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGACTCG : 194682 177 : ProLeuTyrGluValIlePheValLeuGlnSerPheSerPheMetIleAlaGlyMetM : 196 |||:!!||||||:!!! !||||||! !|||! !.!.! ! !! ||| ! ! !! ProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuSerT 194683 : CCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGTCGA : 194742 197 : etTyrThrGlyThrAspThrPheMetSerLeuLeuIlePheHisValCysGlyGlnLe : 215 ! !! !|||! ! !!!:!!!.:!::!! !:!!|||.!.||| !|||||| !!! hrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGlyLeuPh 194743 : CGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTTGTT : 194799 216 : uGluAsnLeuLysAlaArgIle : 222 !||| !!.. !|||!!: eGluValThrSerArgArgMet 194800 : CGAAGTGACCAGCAGAAGGATG : 194822 vulgar: CbirOr107NTE 2 222 . KQ414889.1 194168 194822 + 105 M 18 54 G 1 0 M 37 111 G 1 0 M 163 489 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194169 194822 105 + . gene_id 9 ; sequence CbirOr107NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194169 194822 . + . KQ414889.1 exonerate:protein2genome:local exon 194169 194822 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 194169 194822 105 + . alignment_id 9 ; Query CbirOr107NTE ; Align 194169 3 54 ; Align 194223 22 111 ; Align 194334 60 489 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr105NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 0 -> 224 Target range: 232453 -> 233128 1 : TyrGluTrpAlaIleGluAlaAsnArgLeuSerLeuThrLeuPheGlyValTrpProL : 20 ||||||!::::!|||:!!!.!||||||! !! !||||||! !.!.|||!.!||||||: TyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProA 232454 : TACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGC : 232511 21 : ysAsnAsnGluThrLysHisAsnLysLeuMetSerAsnIleArgValValIleLeuLe : 39 :: !!..||||||..!... !:!!! !:!: ! ! !! !:!! !:!! !! rgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCy 232512 : GTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTG : 232568 40 : uAsnValMetIleTrpIleCysLeuValProAsnLeuHisTyrLeuLeuLysValTyr : 58 !:!! !:!!!!: !! :!!|||||| !:!!! !:!:!!||| ! ! !! sHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAsp 232569 : TCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGAC : 232625 59 : AspAspIleMetSerAlaIleAspAsnLeuGlnCysThrLeuProLeuLeuIleAlaI : 78 ..!:!! !..! !!!: ! ::!:!! !! ! !! !!!!|||!!:!.! ThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyG 232626 : ACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTG : 232685 79 : leIleLysLeuPheValIleTrpGlnLysLysTyrAspValLeuProLeuLeuAsnMe : 97 !:!:!!.! !! ! !:!:! ! !||| ! !!|||:!!||| !! !:!!.!... luLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGl 232686 : AATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACA : 232742 98 : tIleLysAspAspTrpLeuArgProLysProLeuThrGluArgAsnValMetIleLys : 116 !:!:|||.!.||||||! !!.! !||| !! !..!.!.|||:!!:!!|||:!:||| nValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLys 232743 : GGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAG : 232799 117 : GlnAlaArgIleAlaArgThrLeuThrIlePheGlyTyrPheValThrGlnLeuThrA : 136 .!.|||!:!:!!!.!|||:!!:!!.!! !.!!!.! ||| !! !!!. ! !! AsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyV 232800 : AACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTG : 232859 137 : laIleThrValLeuPheLeuProLeuPheGlyIleSerMetThrTyrArgAsnAsnLy : 155 .! !:!!! ! !.!.:!! !! !.!! !!!!:|||! ! !||| !...|||:! alGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGl 232860 : TCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGA : 232916 156 : sThrAspThrAspLysLeuLeuProValGlnSerTyr<->TyrLeuTyrAsnValSer : 173 !!:! !!:!! ! ! !|||||| ! !! !||| ! ||| :!!..!!!! uSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArg 232917 : GAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGA : 232973 174 : LysSerProLeuTyrGluValThrPheValLeuGlnSerIleSerValMetThrAlaG : 193 |||||| ! !!|||:!!! !||||||||||||!!!:!!|||! !.!.! !!.!. PheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValA 232974 : TTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGA : 233033 194 : lyThrThrTyrSerGlyMetAspThrTyrMetSerLeuLeuValPheHisValCysGl : 212 .!:!!..! ! !||| ! !! :!!:!!|||!.!.!.|||!.!||||| snSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGl 233034 : ACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGG : 233090 213 : yGlnLeuGluAsnLeuArgGlyArgIleArgAsnLeu : 224 |||||||.!. :!!! !..!!:!:!: !:!!||| yGlnLeuAsnValValMetSerLysLeuAspAspLeu 233091 : ACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTG : 233128 vulgar: CbirOr105NTE 0 224 . KQ414889.1 232453 233128 + 171 M 167 501 G 0 3 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232454 233128 171 + . gene_id 1 ; sequence CbirOr105NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232454 233128 . + . KQ414889.1 exonerate:protein2genome:local exon 232454 233128 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232454 233128 171 + . alignment_id 1 ; Query CbirOr105NTE ; Align 232454 1 501 ; Align 232958 168 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr105NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 1 -> 217 Target range: 259769 -> 260420 2 : GluTrpAlaIleGluAlaAsnArgLeuSerLeuThrLeuPheGlyValTrpProLysA : 21 !!:!::::!:!!:!! !||||||! !! !|||! !! !.!.|||!.!|||||| : AspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS 259770 : GACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTT : 259827 22 : snAsnGluThrLysHisAsnLysLeuMetSerAsnIleArgValValIleLeuLeuAs : 40 ::::!...|||! ... !:!! !!!:! !::!:!!! !:!!:!!.!!:!!! ! ! erSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTy 259828 : CATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTA : 259884 41 : nValMetIleTrpIleCysLeuValProAsnLeuHisTyrLeuLeuLysValTyrAsp : 59 ! !! ||| !:!! !|||:!!||| !:!!! !:!!:!!||| ! ! ! !!: rSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGlu 259885 : CAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAG : 259941 60 : AspIleMetSerAlaIleAspAsnLeuGlnCysThrLeuProLeuLeuIleAlaIleI : 79 ..!:!: ! ! !! ! ||| ! ! !! !! !!!!:!!!.! !| SerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysI 259942 : AGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTA : 260001 80 : leLysLeuPheValIleTrpGlnLysLysTyrAspValLeuProLeuLeuAsnMetIl : 98 ||!!.! ! ..!:!:! ! !!:! |||:!!||| !! !:!!.!. :! leAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisVa 260002 : TTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGT : 260058 99 : eLysAspAspTrpLeuArgProLysProLeuThrGluArgAsnValMetIleLysGln : 117 ::!!:!!|||||| !! ! !! ! ! !! !!!:!:!|||||||||:!:!:! ! lGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyr 260059 : GGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATAC : 260115 118 : AlaArgIleAlaArgThrLeuThrIlePheGlyTyrPheValThrGlnLeuThrAlaI : 137 |||!:!.!!!.!||| !:!!.!! !! ! !! ! !!..!||| ! !!.!: AlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValL 260116 : GCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTC : 260175 138 : leThrValLeuPheLeuProLeuPheGlyIleSerMetThrTyrArgAsnAsnLysTh : 156 !: ! !!! !!!.:!! !!:!!!!..!!! !..!:!!! ! ! !...|||:!!|| euCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluTh 260176 : TGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGAC : 260232 157 : rAspThrAspLysLeuLeuProValGlnSerTyr<->TyrLeuTyrAsnValSerLys : 174 | ! !! ! ! ||||||||| ! ! !||| ! ||| ||||||!:! ! rArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAsp 260233 : GAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGAC : 260289 175 : SerProLeuTyrGluValThrPheValLeuGlnSerIleSerValMetThrAlaGlyT : 194 ||||||:!! !!|||:!!..!.!!|||:!!|||! !:!!|||! !.!.! !!.!..!: SerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnS 260290 : AGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATT : 260349 195 : hrThrTyrSerGlyMetAspThrTyrMetSerLeuLeuValPheHisValCysGlyGl : 213 !!!:! ! !|||!!: !!:! ! !:!!:!!|||..! !|||!.!|||||||| erSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGl 260350 : CGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCA : 260406 214 : nLeuGluAsnLeu : 217 ||||.!. ||| nLeuAsnValLeu 260407 : GTTGAACGTGCTC : 260420 vulgar: CbirOr105NTE 1 217 . KQ414889.1 259769 260420 + 157 M 166 498 G 0 3 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259770 260420 157 + . gene_id 2 ; sequence CbirOr105NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259770 260420 . + . KQ414889.1 exonerate:protein2genome:local exon 259770 260420 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259770 260420 157 + . alignment_id 2 ; Query CbirOr105NTE ; Align 259770 2 498 ; Align 260271 168 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr105NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 4 -> 224 Target range: 208218 -> 208881 5 : IleGluAlaAsnArgLeuSerLeuThrLeuPheGlyValTrpProLysAsnAsnGluT : 24 :!!... !||| !! !!!!|||! !:!!.!!||| !||||||!:!::!! !!: ValArgLeuAsnValTrpThrLeuLysIleIleGlySerTrpProArgSerIleAspA 208219 : GTTCGTCTGAACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATC : 208276 25 : hrLysHisAsnLysLeuMetSerAsnIleArgValValIleLeuLeuAsnValMetIl : 43 !... :!! !! ..!:!!|||! !:!! !:!!||| !:!! !:!!:! rgSerTrpLeuGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLe 208277 : GTTCCTGGTTAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCT : 208333 44 : eTrpIleCysLeuValProAsnLeuHisTyrLeuLeuLysValTyrAspAspIleMet : 62 ! ! .!! !:!!:!!|||!.! ! !:! !:!! ||| !!!:|||.!! uGlyPheIleValIleProThrGlyMetPheAlaIleLeuValValGluAspPheTyr 208334 : CGGTTTCATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTAC : 208390 63 : SerAlaIleAspAsnLeuGlnCysThrLeuProLeuLeuIleAlaIleIleLysLeuP : 82 ..! !:!! ! ! !! !.....! ! ! !!!!:!!!!:|||.!!! |||! ! AspGlnLeuLysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrV 208391 : GACCAATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACG : 208450 83 : heValIleTrpGlnLysLysTyrAspValLeuProLeuLeuAsnMetIleLysAspAs : 101 ! :!!!!: ::::!! !|||:!!! ! !! !:!!.!. :!!:!!! !|| alIleMetThrValArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAs 208451 : TGATCATGACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGA : 208507 102 : pTrpLeuArgProLysProLeuThrGluArgAsnValMetIleLysGlnAlaArgIle : 120 |||| !!.! !:!!! ! ! !!!:|||!!.:!!|||:!: ! .!.|||!!!.!! pTrpArgAsnValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPhe 208508 : TTGGAGAAACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTC : 208564 121 : AlaArgThrLeu<->ThrIlePheGlyTyrPheValThrGlnLeuThrAlaIleThrV : 139 ||||||! !||| ..!|||! !||| !|||:!! ! ! ... ... AlaArgLysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrT 208565 : GCCAGGAAACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctatt : 208624 140 : alLeuPheLeuProLeuPheGlyIleSerMetThrTyrArgAsnAsnLysThrAspTh : 158 :!! !||||||||| ! !! !!.!:!:..! ! ..!..!..!!!. ! yrIleAlaLeuProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTy 208625 : acaTCGCTTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTA : 208681 159 : rAspLysLeuLeuProValGlnSerTyrTyrLeuTyrAsnValSerLysSerProLeu : 177 ! !:!|||:!! ! ! !! ! !:!:!! :!!||| !! ! ||||||:!! rArgArgLeuValTyrProValProLysPheIleLeuAspValArgTyrSerProVal 208682 : CAGAAGGCTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTG : 208738 178 : TyrGluValThrPheValLeuGlnSerIleSerValMetThrAlaGlyThrThrTyrS : 197 !!|||:!! !!:!..!:!!|||! !:!:|||! !.!...!||| !!.!! ! AsnGluIlePheTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrV 208739 : AATGAGATTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGG : 208798 198 : erGlyMetAspThrTyrMetSerLeuLeuValPheHisValCysGlyGlnLeuGluAs : 216 !||| ! !! :!!||||||!.!.!.|||!.!||||||||||||:!!! alGlyAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIl 208799 : TTGGGGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGAT : 208855 217 : nLeuArgGlyArgIleArgAsnLeu : 224 !|||! !..! !!!!:..!!!.||| eLeuMetSerTrpMetGluLysLeu 208856 : TTTGATGTCCTGGATGGAGAAGTTG : 208881 vulgar: CbirOr105NTE 4 224 . KQ414889.1 208218 208881 + 145 M 120 360 G 0 3 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208219 208881 145 + . gene_id 3 ; sequence CbirOr105NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208219 208881 . + . KQ414889.1 exonerate:protein2genome:local exon 208219 208881 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208219 208881 145 + . alignment_id 3 ; Query CbirOr105NTE ; Align 208219 5 360 ; Align 208582 125 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr105NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 1 -> 217 Target range: 266634 -> 267285 2 : GluTrpAlaIleGluAlaAsnArgLeuSerLeuThrLeuPheGlyValTrpProLysA : 21 !!:!::::!:!::!! !||||||! !! !|||! !! !.!.|||!.!|||||| ! AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProL 266635 : GATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGT : 266692 22 : snAsnGluThrLysHisAsnLysLeuMetSerAsnIleArgValValIleLeuLeuAs : 40 ::: |||... ! !:!!! !!!: !::! ! !:!!:!!:!!:!!! ! ! euSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266693 : TGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 41 : nValMetIleTrpIleCysLeuValProAsnLeuHisTyrLeuLeuLysValTyrAsp : 59 ! ! ||| !.!! !:!!:!!||| !||| !:!!|||:!! !! ! !!!!: rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 60 : AspIleMetSerAlaIleAspAsnLeuGlnCysThrLeuProLeuLeuIleAlaIleI : 79 ..!||| !!! !:!: ! !!! ! ! !! !! !!!!:!!!.! !| SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 80 : leLysLeuPheValIleTrpGlnLysLysTyrAspValLeuProLeuLeuAsnMetIl : 98 ||!!.! ! !..!:!:! !! !:::!.. ! !!::!!! ! !! !:!!.!. !! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 99 : eLysAspAspTrpLeuArgProLysProLeuThrGluArgAsnValMetIleLysGln : 117 ::!! |||||| !! ! !! !! ! !!!:!:!.!.||||||:!:|||.!. tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 118 : AlaArgIleAlaArgThrLeuThrIlePheGlyTyrPheValThrGlnLeuThrAlaI : 137 |||||||||!.!||| !:!!.!!|||||| !! !!! !|||! ! !!.!: AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 138 : leThrValLeuPheLeuProLeuPheGlyIleSerMetThrTyrArgAsnAsnLysTh : 156 !! ! !! ! ! :!! !! !||| !!!:..!! ..! ! !..!|||:!!|| euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 157 : rAspThrAspLysLeuLeuProValGlnSerTyr<->TyrLeuTyrAsnValSerLys : 174 | ! !! ! ||||||||| ! ! !||| ! :!! ! |||..!! rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 175 : SerProLeuTyrGluValThrPheValLeuGlnSerIleSerValMetThrAlaGlyT : 194 |||||| ! !!|||:!!..!.!!|||! !|||! !:!!|||! !.!.! !!.!..!: SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 195 : hrThrTyrSerGlyMetAspThrTyrMetSerLeuLeuValPheHisValCysGlyGl : 213 !!!:! ! !||| !!:! ! :!!:!!!!!!.! !|||!.!|||||||| erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 214 : nLeuGluAsnLeu : 217 ||||... ||| nLeuSerValLeu 267272 : GCTGAGCGTGCTG : 267285 vulgar: CbirOr105NTE 1 217 . KQ414889.1 266634 267285 + 139 M 166 498 G 0 3 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266635 267285 139 + . gene_id 4 ; sequence CbirOr105NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266635 267285 . + . KQ414889.1 exonerate:protein2genome:local exon 266635 267285 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266635 267285 139 + . alignment_id 4 ; Query CbirOr105NTE ; Align 266635 2 498 ; Align 267136 168 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr105NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 1 -> 228 Target range: 194168 -> 194888 2 : GluTrpAlaIleGluAlaAsnArgLeuSerLeuThrLeuPheGlyValTrpProLysA : 21 |||!::|||:!!..!!.! !:! ! !||||||! !.!!|||:!!||||||!:!. GluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProArgG 194169 : GAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAAGGG : 194226 22 : snAsnGluThrLysHisAsnLysLeuMetSerAsnIleArgValValIleLeuLeuAs : 40 !.:!!... !::: :!!!:!:!! ! ! !!:!..!! !:!::!!!!! luAspSerLeuArg---AspArgValArgLeuPheAlaGlnThrGlyValValPheAl 194227 : AGGATTCTCTTCGC---GACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTTCGC : 194280 41 : nValMetIleTrpIleCysLeuValProAsnLeuHisTyrLeuLeuLysValTyrAsp : 59 !:!!||| !!:::!! |||||||||:!!:!! !||| !! ! ! !! !!!: aLeuMetCysPheLeu---LeuValProHisValIleTyrThrTyrPheAspCysGlu 194281 : TTTGATGTGCTTTCTA---CTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAG : 194334 60 : AspIleMetSerAlaIleAspAsnLeuGlnCysThrLeuProLeuLeuIleAlaIleI : 79 |||:!:! !!!! !!!: ! :!! !... !:!! ! !|||:!:||||||| AspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleI 194335 : GATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCA : 194394 80 : leLysLeuPheValIleTrpGlnLysLysTyrAspValLeuProLeuLeuAsnMetIl : 98 |||||!!!!::..!!!: !!!.!:! ! !!::!! ! !! !||| !!! leLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGluMe 194395 : TCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGAT : 194451 99 : eLysAspAspTrpLeuArgProLysProLeuThrGluArgAsnValMetIleLysGln : 117 ::!! .!.!:: ! ! !:!! ! ! !!!:|||.!.||||||! !!. tGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsnCys 194452 : GGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGC : 194508 118 : AlaArgIleAlaArgThrLeuThrIlePheGlyTyrPheValThrGlnLeuThrAlaI : 137 |||!:!|||!.!||| !!!!|||! !.!. !! :!!:!! ! ! !|||: AlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaL 194509 : GCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTT : 194568 138 : leThrVal<->LeuPheLeuProLeuPheGlyIleSerMetThrTyrArgAsnAsnLy : 155 !: !! ! :!!.!!|||||||||.!...! !!!!!:..! ! ..!:!!|||!. euProTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGluAspAsnSe 194569 : TGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAACAG : 194625 156 : sThrAspThrAspLysLeuLeuProValGlnSerTyrTyrLeuTyrAsnValSerLys : 174 .|||.!.! ! |||! ! !:!!...!:!||| !!!!!:! :!!..! ! rThrGlnIle---ProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAsp 194626 : TACTCAGATA---CCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGAC : 194679 175 : SerProLeuTyrGluValThrPheValLeuGlnSerIleSerValMetThrAlaGlyT : 194 ||||||:!!||||||:!!|||||||||! !|||! !:!:! ! !! ! ! ! !: SerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuS 194680 : TCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGT : 194739 195 : hrThrTyrSerGlyMetAspThrTyrMetSerLeuLeuValPheHisValCysGlyGl : 213 !!||| !!!!!|||!!: !!!:!! :!::!! !:!!:!!.!.||| !|||||| erThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGlyLe 194740 : CGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTT : 194796 214 : nLeuGlu >>>> Target Intron 1 >>>> AsnLeuArgGlyArgIleArgA : 223 !!!!||| 45 bp :!!:!!|||||||||:!!|||: uPheGlu++ ++AspIleArgGlyArgLeuArgA 194797 : GTTCGAAgt.........................agGATATTCGGGGTAGACTTAGGG : 194871 224 : snLeuAspLysPheAsn : 228 !!:!!! !:!!|||:!! spValValGlnPheHis 194872 : ACGTCGTTCAGTTTCAT : 194888 vulgar: CbirOr105NTE 1 228 . KQ414889.1 194168 194888 + 129 M 24 72 G 1 0 M 19 57 G 1 0 M 93 279 G 0 3 M 19 57 G 1 0 M 56 168 5 0 2 I 0 41 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194169 194888 129 + . gene_id 5 ; sequence CbirOr105NTE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 194169 194804 . + . KQ414889.1 exonerate:protein2genome:local exon 194169 194804 . + . insertions 3 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 194805 194806 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 194805 194849 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 194848 194849 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 194850 194888 . + . KQ414889.1 exonerate:protein2genome:local exon 194850 194888 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194169 194888 129 + . alignment_id 5 ; Query CbirOr105NTE ; Align 194169 2 72 ; Align 194241 27 57 ; Align 194298 47 279 ; Align 194580 140 57 ; Align 194637 160 168 ; Align 194850 216 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr105NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 3 -> 217 Target range: 226933 -> 227578 4 : AlaIleGluAlaAsnArgLeuSerLeuThrLeuPheGlyValTrpProLysAsnAsnG : 23 ::!|||:!! !||||||! ! !|||! !! !.!!|||:!!||||||..!:::..!: SerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgL 226934 : AGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCA : 226991 24 : luThrLysHisAsnLysLeuMetSerAsnIleArgValValIleLeuLeuAsnValMe : 42 !!!:!...!..! ! ! ! !::! !:!!! !.!!|||! ! !!!.!:! ysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLe 226992 : AAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCT : 227048 43 : tIleTrpIleCysLeuValProAsnLeuHisTyrLeuLeuLysValTyrAspAspIle : 61 !!!: ! .!! |||||| !!!:! ! |||:!!:!! !! ! ! ! ! ! uMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAla 227049 : GATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCT : 227105 62 : MetSerAlaIleAspAsnLeuGlnCysThrLeuProLeuLeuIleAlaIleIleLysL : 81 !:!.!!:!: ! ! :!! ! !! ! !!!! !!!::!!:!!:!!|||! TyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuLysT 227106 : TACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGT : 227165 82 : euPheValIleTrpGlnLysLysTyrAspValLeuProLeuLeuAsnMetIleLysAs : 100 !! !:!!:!: ! ! :!! !!|||:!!||| !! !:!!.!. !|||||| yrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIleLysTr 227166 : ACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATG : 227222 101 : pAspTrpLeuArgProLysProLeuThrGluArgAsnValMetIleLysGlnAlaArg : 119 |||||| !!.! !!:! !||| !!!:||||||||||||:!:! ! ! ||| ! pAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyr 227223 : GGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTAT : 227279 120 : IleAlaArgThrLeu<->ThrIlePheGlyTyrPheValThrGlnLeuThrAlaIleT : 138 !!.!|||! !||| ||||||! ! !!:!|||||| !... ...... TyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheValPheP 227280 : TACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttt : 227339 139 : hrValLeuPheLeuProLeuPheGlyIleSerMetThrTyrArgAsnAsnLysThrAs : 157 :!! !!:!!|||:!! !!.! !|||:!:.!! ..!:!!...!!. !.. heTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSe 227340 : tctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAG : 227396 158 : pThrAspLysLeuLeuProValGlnSerTyrTyrLeuTyrAsnValSerLysSerPro : 176 ! ! !:!!:!!! ! ! ! !! ! !:!! !:!!||| !! ! |||||| rTyrIleGlnMetProPheProPheProLysIleIleAlaAspValArgTyrSerPro 227397 : TTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCT : 227453 177 : LeuTyrGluValThrPheValLeuGlnSerIleSerValMetThrAlaGlyThrThrT : 196 !!! !!|||:!! !||| !:!!|||! !:!!!!!! !!!:..! ! ! !..! PheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuHisGlyValT 227454 : TTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCA : 227513 197 : yrSerGlyMetAspThrTyrMetSerLeuLeuValPheHisValCysGlyGlnLeuGl : 215 |||!.! !!:! :!!||||||!.! !!|||!.!|||||||||:!!|| hrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGl 227514 : CGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGA : 227570 216 : uAsnLeu : 217 | ||| uValLeu 227571 : GGTGTTG : 227578 vulgar: CbirOr105NTE 3 217 . KQ414889.1 226933 227578 + 121 M 121 363 G 0 3 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226934 227578 121 + . gene_id 6 ; sequence CbirOr105NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226934 227578 . + . KQ414889.1 exonerate:protein2genome:local exon 226934 227578 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226934 227578 121 + . alignment_id 6 ; Query CbirOr105NTE ; Align 226934 4 363 ; Align 227300 125 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr105NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 0 -> 224 Target range: 278570 -> 279254 1 : TyrGluTrpAlaIleGluAlaAsnArgLeuSerLeuThrLeuPheGlyValTrpProL : 20 !:: !!::::!:!!:!! !||||||! !! !|||! !! !.!!|||||||||||| TrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProL 278571 : TGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTC : 278628 21 : ysAsnAsnGluThrLysHisAsnLysLeuMetSerAsnIleArgValValIleLeuLe : 39 !:! ! ..!! ! :!! !!!:|||::!:!: !:!!!.!:!!:!! euSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSe 278629 : TCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAG : 278685 40 : uAsnValMetIleTrpIleCysLeuValPro<->AsnLeuHisTyrLeuLeuLysVal : 57 ! ! !!:!!||| ! .!! !||||||||| !||| ! :!!||| ! ! rCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLys 278686 : TTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAA : 278742 58 : TyrAspAspIleMetSerAlaIleAspAsnLeuGlnCysThrLeuProLeuLeuIleA : 77 !! !|||:!! !!! !||| ! ! :!! ! ! ! !! ! !!!:| ThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetA 278743 : ACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGG : 278802 78 : laIleIleLysLeuPheValIleTrpGlnLysLysTyrAspValLeuProLeuLeuAs : 96 ||! ||||||! !!:!:!!:!! !..!::: ! ! :!! ! !! !:!!|| laThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAs 278803 : CAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAA : 278859 97 : nMetIleLysAspAspTrp<-><-><->LeuArgProLysProLeuThrGluArgAsn : 112 | |||::: |||||| ||| ! !::: ||||||... nAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGlu 278860 : TGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagag : 278916 113 : ValMetIleLysGlnAlaArgIleAlaArgThrLeuThrIlePheGlyTyr<->PheV : 131 :::|||! ! ...|||||||||!.!|||:!!|||.!!||||||.!! ! |||: IleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheM 278917 : atcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCA : 278976 132 : alThrGlnLeuThrAlaIleThrValLeuPheLeuProLeuPheGlyIleSerMetTh : 150 !! !... ! !!.!.!! !..! ! ! :!!|||||||||!.!:!! !!! ! etTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGl 278977 : TGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGA : 279033 151 : rTyrArgAsnAsnLysThrAspThrAspLysLeuLeuProValGlnSerTyrTyrLeu : 169 ! !! !:!!|||:!!|||! ! !..!:!! !!!!|||:!! ! !! !||| uIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArg---GlyLeu 279034 : GATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGC---GGCCTC : 279087 170 : TyrAsnValSerLysSerProLeuTyrGluValThrPheValLeuGlnSerIleSerV : 189 !:!! ! !!! ||||||! !!:!|||:!!..! !!:!!|||!!!:!::!!! LeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaA 279088 : CTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCG : 279147 190 : alMetThrAlaGlyThrThrTyrSerGlyMetAspThrTyrMetSerLeuLeuValPh : 208 .!.!...! ! !:!!..! ! !||| !!:!! !!::!!:!!!!!|||.! laPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMe 279148 : CGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCAT : 279204 209 : eHisValCysGlyGlnLeuGluAsnLeuArgGlyArgIleArgAsnLeu : 224 .|||||||||||||||!!!..!! ||| ! !!:!:!: !!!.||| tHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeu 279205 : GCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTC : 279254 vulgar: CbirOr105NTE 0 224 . KQ414889.1 278570 279254 + 117 M 49 147 G 0 3 M 53 159 G 0 9 M 27 81 G 0 3 M 37 111 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278571 279254 117 + . gene_id 7 ; sequence CbirOr105NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278571 279254 . + . KQ414889.1 exonerate:protein2genome:local exon 278571 279254 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278571 279254 117 + . alignment_id 7 ; Query CbirOr105NTE ; Align 278571 1 147 ; Align 278721 50 159 ; Align 278889 103 81 ; Align 278973 130 111 ; Align 279084 168 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr105NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 1 -> 217 Target range: 262846 -> 263497 2 : GluTrpAlaIleGluAlaAsnArgLeuSerLeuThrLeuPheGlyValTrpProLysA : 21 !!:!::::!:!::!! !||||||! ! !|||! !! !.!!|||!.!|||||| !: AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 22 : snAsnGluThrLysHisAsnLysLeuMetSerAsnIleArgValValIleLeuLeuAs : 40 :! !..!! !..!...! :!!! !!!:! ! .!!! !:!!:!!:!!:!!! ! ! erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 41 : nValMetIleTrpIleCysLeuValProAsnLeuHisTyrLeuLeuLysValTyrAsp : 59 ! !:!:||| ! !:!!:!!|||::!:!!! !:!!:!!:!! !! ! !!!: rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 60 : AspIleMetSerAlaIleAspAsnLeuGlnCysThrLeuProLeuLeuIleAlaIleI : 79 :!!.!! ! ! !:!:.!. !||| ! !! !! !!!!:!!!.!!!:| AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 80 : leLysLeuPheValIleTrpGlnLysLysTyrAspValLeuProLeuLeuAsnMetIl : 98 ||!!.! ! ! !:!:! !! ! !.. ! |||:!!! ! !! !:!!.!. :! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 99 : eLysAspAspTrpLeuArgProLysProLeuThrGluArgAsnValMetIleLysGln : 117 ::!!!!:||||||! !! ! !! !||| !!!:!:!..!:!!|||:!:|||.!. lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 118 : AlaArgIleAlaArgThrLeuThrIlePheGlyTyrPheValThrGlnLeuThrAlaI : 137 |||!:! !!.!||| !:!!.!! !! ! !! .!! !!! !||| !!:! !! AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 138 : leThrValLeuPheLeuProLeuPheGlyIleSerMetThrTyrArgAsnAsnLysTh : 156 !: ! !! !.!.:!! !! !||| !! !..!:!!! ! ! !..!|||:!!|| etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 157 : rAspThrAspLysLeuLeuProValGlnSerTyr<->TyrLeuTyrAsnValSerLys : 174 | ! ! ::::!!|||||| !! ! !||| ! :!! ! |||..!! ! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 175 : SerProLeuTyrGluValThrPheValLeuGlnSerIleSerValMetThrAlaGlyT : 194 !:!||| ! !!|||:!! !.!!!.! !|||! !:!:|||! !.!.! !!.! !. AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 195 : hrThrTyrSerGlyMetAspThrTyrMetSerLeuLeuValPheHisValCysGlyGl : 213 !!||| ! !||| ! ! ! :!!:!!!!!!.! !|||!.!|||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 214 : nLeuGluAsnLeu : 217 ||||.!. ||| nLeuAsnValLeu 263484 : GTTGAACGTGTTG : 263497 vulgar: CbirOr105NTE 1 217 . KQ414889.1 262846 263497 + 111 M 166 498 G 0 3 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 263497 111 + . gene_id 8 ; sequence CbirOr105NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262847 263497 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263497 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262847 263497 111 + . alignment_id 8 ; Query CbirOr105NTE ; Align 262847 2 498 ; Align 263348 168 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr99NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 320 -> 373 Target range: 301877 -> 302036 321 : CysAspAlaLeuTyrGluAlaIleCysAspLeuAspTrpTyrLysLeuAspSerArgG : 340 |||..! !:!! !..!||| ! !!!::!!|||||||||!!.||| :!!!:!: CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysA 301878 : TGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGA : 301935 341 : lnSerArgAsnLeuIleLeuLeuMetIleArgAlaSerGluProPheArgIleThrAl : 359 :!:!! !:!!||||||||||||! :!:! !:!!..! ! ||| !:!:!!||||| rgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAl 301936 : GAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGC : 301992 360 : aGlyLysValIleProLeuThrMetThrThrPheCysSerLeu : 373 |||||||:!!||| !|||:!!:!!!.!|||||| !!|||:!! aGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301993 : AGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: CbirOr99NTE 320 373 . KQ414889.1 301877 302036 + 111 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301878 302036 111 + . gene_id 1 ; sequence CbirOr99NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301878 302036 111 + . alignment_id 1 ; Query CbirOr99NTE ; Align 301878 321 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr99NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 330 -> 380 Target range: 280306 -> 280456 331 : LeuAspTrpTyrLysLeuAspSerArgGlnSerArgAsnLeuIleLeuLeuMetIleA : 350 :!!|||||||||:::||| .!!!:!:!!:!!!:!..!|||||||||:!!.!. ! IleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaV 280307 : ATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCG : 280364 351 : rgAlaSerGluProPheArgIleThrAlaGlyLysValIleProLeuThrMetThrTh : 369 !:!!!:!... !!.!.!:!:!!||||||||||||:!!||| !|||:!!:!:!:!!: alSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSe 280365 : TGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAG : 280421 370 : rPheCysSerLeuLeuLysThrSerAlaGlyTyr : 380 !|||||||||:!! !! ! !!:! !..!||| rPheCysSerValSerIleIleAsnLeuSerTyr 280422 : CTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 280456 vulgar: CbirOr99NTE 330 380 . KQ414889.1 280306 280456 + 107 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280307 280456 107 + . gene_id 2 ; sequence CbirOr99NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280307 280456 . + . KQ414889.1 exonerate:protein2genome:local exon 280307 280456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280307 280456 107 + . alignment_id 2 ; Query CbirOr99NTE ; Align 280307 331 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr99NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 330 -> 380 Target range: 287093 -> 287243 331 : LeuAspTrpTyrLysLeuAspSerArgGlnSerArgAsnLeuIleLeuLeuMetIleA : 350 :!!|||||||||:::||| .!!!:! !:!!!:!..!|||||||||:!!.!. ! IleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaV 287094 : ATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCG : 287151 351 : rgAlaSerGluProPheArgIleThrAlaGlyLysValIleProLeuThrMetThrTh : 369 !:!!!:!... !!.!.!:!:!!||||||||||||:!!||| !|||:!!:!:!:!!: alSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSe 287152 : TGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAG : 287208 370 : rPheCysSerLeuLeuLysThrSerAlaGlyTyr : 380 !|||||||||:!! !! ! !!:! !..!||| rPheCysSerValSerIleIleAsnLeuSerTyr 287209 : CTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 287243 vulgar: CbirOr99NTE 330 380 . KQ414889.1 287093 287243 + 105 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287094 287243 105 + . gene_id 3 ; sequence CbirOr99NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287094 287243 . + . KQ414889.1 exonerate:protein2genome:local exon 287094 287243 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287094 287243 105 + . alignment_id 3 ; Query CbirOr99NTE ; Align 287094 331 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr99NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 2 -> 215 Target range: 289735 -> 290374 3 : TrpAlaIleGluLeuAsnArgPheGlyLeuLysLeuIleGlyLeuTrpProGluIle< : 22 !::.!!.!!|||||| !!.!!:: !||||||! !||||||:!!!::||| :!! TyrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrProPheValP 289736 : TACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCT : 289793 23 : ->AspLysAlaValLysThrSerTyrIleSerAspLeuArgAlaTyrMetIlePheIl : 40 ..!:::||| !!:! !..! ! :!!...:!! ! ! !:!!:!!! ! heSerArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLeuValCysCy 289794 : TTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTG : 289850 41 : eIleIleThrPheValThrThrIleProLeuMetArgSerLeuIleArgValArgAsp : 59 ! ||| ! !!! !! !:!!|||!!!! !.! !:!!:!! ! ! !:!! sSerIleLeuGlnPheIleIleValProPheSerHisHisValLeuPheSerAspAsn 289851 : CTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAAC : 289907 60 : AspIleLeuLeuValIleGluAsnLeuGlnPheIleLeuProIleMetMetValLeuL : 79 |||!!: ! ! !!:!!:!!|||||| ! :!: ! ! !:!!! ..!!!!! AspMetAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuThrThrPheP 289908 : GACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCT : 289967 80 : euLysPheLeuIleMetArgTrpLysGlnThrAlaLeuLeuSerIleLeuAsnMetMe : 98 !!|||!:!! ! !.!.!!! !||| :!!|||:!! ! !! !:!!!!. !! heLysTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysValLysHisIl 289968 : TCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACAT : 290024 99 : tAlaAsnAspTrpIleAlaPheLysLeuAspThrGlnArgAsnValMetMetLysTrp : 117 :! !!..||||||! !!!.::: !!!: !!!.||| !:!!|||:!:!:!!:: eGluArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMetLeuArgTyr 290025 : CGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATAC : 290081 118 : AlaArgIleAlaArg<->LeuIleValThrCysGlyTyrMetLeuThrGlyPheGlyI : 136 !.!! !!!:::!||| |||||| ! !|||!.! !.!.||| ! ! !|||: ValThrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyL 290082 : GTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTC : 290141 137 : leIleValValThrIlePheProTyrCysGlyLeuProPheArgHisLeuSerAsnLe : 155 !: ! ! !|||:!!.!.|||! ! !..! ! ! ! !:!! .!!|||:! euSerTyrAsnThrValIleProLeuPheSerLysLysSerValAsn---GlyAsnVa 290142 : TGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAAGAGCGTGAAC---GGTAACGT : 290195 156 : uThrAspArgAspLysGlnLeuProIleGluAlaTyrTyrPheTyrAsnThrAspPro : 174 !||| !||| ! ! ! !||| ! ! ! ! |||!:!:!!..!.!. ! lThrIleArgProLeuThrTyrPro---GlyTyrGluGluPhePheAspValGlnLys 290196 : GACTATCAGACCTCTAACTTATCCC---GGTTACGAGGAGTTCTTCGACGTTCAGAAG : 290249 175 : SerProGlnPheGluLeuThrPheLeuIleGlnAlaMetThrMetPheLeuIleAlaI : 194 |||||| !!:!|||:!!..!|||! !!!:!!...!:!: !:!:.!.:!!! |||! SerProAlaTyrGluIleValPheCysMetHisCysValTyrValMetIleThrAlaA 290250 : AGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGA : 290309 195 : leIleTyrIleSerValAspAlaPheLeuGlyLeuValIleLeuHisThrCysGlyGl : 213 !||| !!::!!!.! !!::!!!. ! !:!! !! ! !|||||||||||||| snIleThrMetAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGl 290310 : ACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCA : 290366 214 : nLeuGlu : 215 |:!!:!! nIleLys 290367 : GATTAAG : 290374 vulgar: CbirOr99NTE 2 215 . KQ414889.1 289735 290374 + 104 M 19 57 G 0 3 M 101 303 G 0 3 M 29 87 G 1 0 M 11 33 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289736 290374 104 + . gene_id 4 ; sequence CbirOr99NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289736 290374 . + . KQ414889.1 exonerate:protein2genome:local exon 289736 290374 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289736 290374 104 + . alignment_id 4 ; Query CbirOr99NTE ; Align 289736 3 57 ; Align 289796 22 303 ; Align 290102 123 87 ; Align 290189 153 33 ; Align 290222 165 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr95NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 321 -> 381 Target range: 280276 -> 280456 322 : CysAspAlaValTyrGlnAlaIleTyrAspPheAspTrpTyrLysLeuGluAlaArgL : 341 ||| !||| ! !:!!! !||| .!!|||||||||:::||| !!.!!:!| CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysL 280277 : TGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGA : 280334 342 : ysAlaArgGlyLeuValLeuLeuMetIleArgAlaSerGluProPheArgIleThrAl : 360 |||||!:!||||||:!!|||:!!.!. ! !:!!!:!... !!.!.!:!:!!||||| ysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 280335 : AAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 280391 361 : aGlyLysValIleProLeuThrLeuThrThrPheCysSerLeuLeuLysThrSerAla : 379 |||||||:!!||| !|||:!!|||!:!!:!|||||||||:!! !! ! !!:! ! aGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeu 280392 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTA : 280448 380 : GlyTyr : 381 ..!||| SerTyr 280449 : TCCTAT : 280456 vulgar: CbirOr95NTE 321 381 . KQ414889.1 280276 280456 + 126 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280277 280456 126 + . gene_id 1 ; sequence CbirOr95NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280277 280456 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280277 280456 126 + . alignment_id 1 ; Query CbirOr95NTE ; Align 280277 322 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr95NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 321 -> 374 Target range: 301877 -> 302036 322 : CysAspAlaValTyrGlnAlaIleTyrAspPheAspTrpTyrLysLeuGluAlaArgL : 341 |||..! !:!! !..!||| |||!!:.!!|||||||||!!.||| !|||!:!! CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysA 301878 : TGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGA : 301935 342 : ysAlaArgGlyLeuValLeuLeuMetIleArgAlaSerGluProPheArgIleThrAl : 360 :!||| !! !|||:!!||||||! :!:! !:!!..! ! ||| !:!:!!||||| rgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAl 301936 : GAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGC : 301992 361 : aGlyLysValIleProLeuThrLeuThrThrPheCysSerLeu : 374 |||||||:!!||| !|||:!!|||!.!|||||| !!|||:!! aGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301993 : AGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: CbirOr95NTE 321 374 . KQ414889.1 301877 302036 + 125 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301878 302036 125 + . gene_id 2 ; sequence CbirOr95NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301878 302036 125 + . alignment_id 2 ; Query CbirOr95NTE ; Align 301878 322 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr95NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 0 -> 228 Target range: 232453 -> 233140 1 : PheValTrpValValGluLeuHisArgPheGlyLeuGluLeuValGlyLeuTrpProT : 20 !:!! !!:: !:!!:!!:!!:!!|||!:: !||| !! !:!!||| !|||||| TyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProA 232454 : TACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGC : 232511 21 : hrIleAspLysAlaAlaLysThrSerAsnIleSerAspLeuArgGlyCysIleIlePh : 39 !:!! :!!.!!:!!!:!.!!..!.!.:!! !! !! ! ! ! :!!! !! rgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCy 232512 : GTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTG : 232568 40 : eIleIleIleValPheValCysAlaIleProPheIleCysSerLeuIleArgValArg : 58 ! ! !:!::!!.!! !! !:!!|||! !||| ! !:!!:!: !! ! ! sHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAsp 232569 : TCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGAC : 232625 59 : SerAspIleIleLeuValMetAspAsnLeuGlnValThrLeuProLeuMetValValL : 78 !!!..!:!! ! !||| ! ::!:!! !! ! !! !!!!:!!:!!! ! ThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyG 232626 : ACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTG : 232685 79 : euLeuLysLeuIleIleMetArgTrpLysGlnThrAlaLeuLeuSerIleLeuAsnMe : 97 !|||!!.! ! ! !:!! ! ||| !!.!! !:!!|||! ! !:!!.!... luLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGl 232686 : AATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACA : 232742 98 : tMetAlaAsnAspTrpArgValPheLysValAspThrGlnArgAspValMetLeuLys : 116 !:!! !.!.||||||||| ! !!||| ! !..!!!.||||||:!!||||||||| nValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLys 232743 : GGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAG : 232799 117 : TrpAlaArgThrAlaArgPheIleValThrCysGlyTyrIleMetThrGlyCysAlaV : 136 |||!:! !!.!|||! |||!.! ! !!.! .!! ! ! ! !!.!| AsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyV 232800 : AACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTG : 232859 137 : alIleIleAlaIleValPheProTyrPheGlyValProPheArgArgLeuSerAsnLe : 155 || ! !! ! !:!! !! !! .!! !!:!! ! ! !:!!.!!||| alGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGl 232860 : TCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGA : 232916 156 : uThrAspSerAspLysProLeuProPheGlnAlaTyr<->TyrPheTyrAspThrAsp : 173 !!:! !!||| ! |||||||||! ! ! !||| ! .!. |||||| uSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArg 232917 : GAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGA : 232973 174 : ProSerProGlnPheGluLeuThrPheValPheGlnSerIleThrMetPheLeuAlaA : 193 !|||||| ! !|||:!!! !||||||.!.|||!!!:!!:!! !|||:!!!.! PheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValA 232974 : TTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGA : 233033 194 : laValIleTyrThrSerValAspAlaLeuLeuGlyLeuValIleLeuHisThrCysGl : 212 ! !:!! !..!.!!!.! !!.!||| !!.!:!!:!! :!!|||.!!||||| snSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGl 233034 : ACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGG : 233090 213 : yGlnLeuGluAsnPheLysAspGlnLeuAlaAsnMetAlaAlaSerLys : 228 |||||||.!. ! ! !...:!!|||! !:!!:!!!.!! !:!!||| yGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLys 233091 : ACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAA : 233140 vulgar: CbirOr95NTE 0 228 . KQ414889.1 232453 233140 + 120 M 167 501 G 0 3 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232454 233140 120 + . gene_id 3 ; sequence CbirOr95NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232454 233140 . + . KQ414889.1 exonerate:protein2genome:local exon 232454 233140 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232454 233140 120 + . alignment_id 3 ; Query CbirOr95NTE ; Align 232454 1 501 ; Align 232958 168 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr95NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 321 -> 381 Target range: 287063 -> 287243 322 : CysAspAlaValTyrGlnAlaIleTyrAspPheAspTrpTyrLysLeuGluAlaArgL : 341 ||| !||| ! !:!!! !||| .!!|||||||||:::||| !!.!!:!! CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysT 287064 : tGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAA : 287121 342 : ysAlaArgGlyLeuValLeuLeuMetIleArgAlaSerGluProPheArgIleThrAl : 360 !|||!:!||||||:!!|||:!!.!. ! !:!!!:!... !!.!.!:!:!!||||| hrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 287122 : CAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 287178 361 : aGlyLysValIleProLeuThrLeuThrThrPheCysSerLeuLeuLysThrSerAla : 379 |||||||:!!||| !|||:!!|||!:!!:!|||||||||:!! !! ! !!:! ! aGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeu 287179 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTA : 287235 380 : GlyTyr : 381 ..!||| SerTyr 287236 : TCCTAT : 287243 vulgar: CbirOr95NTE 321 381 . KQ414889.1 287063 287243 + 120 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287064 287243 120 + . gene_id 4 ; sequence CbirOr95NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287064 287243 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287243 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287064 287243 120 + . alignment_id 4 ; Query CbirOr95NTE ; Align 287064 322 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr95NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 324 -> 371 Target range: 292401 -> 292542 325 : ValTyrGlnAlaIleTyrAspPheAspTrpTyrLysLeuGluAlaArgLysAlaArgG : 344 :!! !!.||| !|||||| !!:||||||!!.||| ! !||||||||||||! IleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgArgLysAlaArgA 292402 : ATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGGCTCGTG : 292459 345 : lyLeuValLeuLeuMetIleArgAlaSerGluProPheArgIleThrAlaGlyLysVa : 363 !:!!||||||:!!:!: !! !.!!!.!.!.|||.!!!:!:!!||||||||||||:! spIleValLeuValLeuAlaIleThrLysHisProIleLysLeuThrAlaGlyLysIl 292460 : ACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGGCAAAAT : 292516 364 : lIleProLeuThrLeuThrThrPhe : 371 !.!! !|||:!!|||!.!|||||| ePheValLeuSerLeuAsnThrPhe 292517 : ATTCGTTCTCTCGTTGAACACTTTT : 292542 vulgar: CbirOr95NTE 324 371 . KQ414889.1 292401 292542 + 115 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292402 292542 115 + . gene_id 5 ; sequence CbirOr95NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292402 292542 . + . KQ414889.1 exonerate:protein2genome:local exon 292402 292542 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292402 292542 115 + . alignment_id 5 ; Query CbirOr95NTE ; Align 292402 325 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr95NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 319 -> 371 Target range: 234982 -> 235138 320 : GluHisCysAspAlaValTyrGlnAlaIleTyrAspPheAspTrpTyrLysLeuGluA : 339 :!!!!.||| ! !||| :!! !:!:||| !!!:||||||::!||| GlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProH 234983 : CAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTC : 235040 340 : laArgLysAlaArgGlyLeuValLeuLeuMetIleArgAlaSerGluProPheArgIl : 358 !!:!! |||! !|||||||||:!!:!!!!: !|||:!!||| ! !.!.!:!|| isLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIl 235041 : ATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAAT : 235097 359 : eThrAlaGlyLysValIleProLeuThrLeuThrThrPhe : 371 ||||||||||||| !!:!!! !:!!:!!:!!.!!|||||| eThrAlaGlyLysPheLeuGlnMetSerValAlaThrPhe 235098 : CACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTT : 235138 vulgar: CbirOr95NTE 319 371 . KQ414889.1 234982 235138 + 106 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234983 235138 106 + . gene_id 6 ; sequence CbirOr95NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234983 235138 . + . KQ414889.1 exonerate:protein2genome:local exon 234983 235138 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234983 235138 106 + . alignment_id 6 ; Query CbirOr95NTE ; Align 234983 320 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr95NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 2 -> 215 Target range: 289735 -> 290374 3 : TrpValValGluLeuHisArgPheGlyLeuGluLeuValGlyLeuTrpProThrIle< : 22 !::..! !!|||||| !!.!!:: !|||:!!! !:!!|||:!!!::||| !:!! TyrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrProPheValP 289736 : TACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCT : 289793 23 : ->AspLysAlaAlaLysThrSerAsnIleSerAspLeuArgGlyCysIleIlePheIl : 40 ..!:::|||::!!:! !..!...! :!!...:!! ! ! !:!::!!! ! heSerArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLeuValCysCy 289794 : TTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTG : 289850 41 : eIleIleValPheValCysAlaIleProPheIleCysSerLeuIleArgValArgSer : 59 ! |||:!! !! ! !:!!||||||! ! ! !:!!:!! ! ! !!:! sSerIleLeuGlnPheIleIleValProPheSerHisHisValLeuPheSerAspAsn 289851 : CTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAAC : 289907 60 : AspIleIleLeuValMetAspAsnLeuGlnValThrLeuProLeuMetValValLeuL : 79 |||!!:! ! ! !!:!: ! |||||| ! ! ! ! !! !:!!..!..!!!!! AspMetAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuThrThrPheP 289908 : GACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCT : 289967 80 : euLysLeuIleIleMetArgTrpLysGlnThrAlaLeuLeuSerIleLeuAsnMetMe : 98 !!|||! ! ! !.!.!!! !||| :!!|||:!! ! !! !:!!!!. !! heLysTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysValLysHisIl 289968 : TCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACAT : 290024 99 : tAlaAsnAspTrpArgValPheLysValAspThrGlnArgAspValMetLeuLysTrp : 117 :! !!..||||||!:!:!!!!.:::! !!!: !!!.|||! !:!!||||||!:!!:: eGluArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMetLeuArgTyr 290025 : CGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATAC : 290081 118 : AlaArgThrAlaArg<->PheIleValThrCysGlyTyrIleMetThrGlyCysAlaV : 136 !.!! !! !::!||| .!!||| ! !|||!.! !.!!:!! ! ! !!!.!: ValThrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyL 290082 : GTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTC : 290141 137 : alIleIleAlaIleValPheProTyrPheGlyValProPheArgArgLeuSerAsnLe : 155 !! ! ! !! !|||.!.|||! |||..! !:!!:! ! !||| euSerTyrAsnThrValIleProLeuPheSer---------LysLysSerValAsnGl 290142 : TGTCTTATAACACTGTCATACCGTTGTTCTCG---------AAGAAGAGCGTGAACGG : 290189 156 : uThrAspSerAspLysProLeuProPheGlnAlaTyr<->TyrPheTyrAspThrAsp : 173 !!.!! !!! !!:!|||||| !!!:!! !.!||| ! |||!:!|||..!.!. yAsnValThrIleArgProLeuThrTyrProGlyTyrGluGluPhePheAspValGln 290190 : TAACGTGACTATCAGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAG : 290246 174 : ProSerProGlnPheGluLeuThrPheValPheGlnSerIleThrMetPheLeuAlaA : 193 !|||||| !!:!|||:!!..!||| !.!.!!.!!!:!! !:!:.!.:!!.!!| LysSerProAlaTyrGluIleValPheCysMetHisCysValTyrValMetIleThrA 290247 : AAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGG : 290306 194 : laValIleTyrThrSerValAspAlaLeuLeuGlyLeuValIleLeuHisThrCysGl : 212 || !||| ! !:!!!.! !!::!||| ! !:!! !! ! !||||||||||| laAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGl 290307 : CGAACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGG : 290363 213 : yGlnLeuGlu : 215 ||||:!!:!! yGlnIleLys 290364 : TCAGATTAAG : 290374 vulgar: CbirOr95NTE 2 215 . KQ414889.1 289735 290374 + 103 M 19 57 G 0 3 M 101 303 G 0 3 M 24 72 G 3 0 M 18 54 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289736 290374 103 + . gene_id 7 ; sequence CbirOr95NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289736 290374 . + . KQ414889.1 exonerate:protein2genome:local exon 289736 290374 . + . insertions 9 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 289736 290374 103 + . alignment_id 7 ; Query CbirOr95NTE ; Align 289736 3 57 ; Align 289796 22 303 ; Align 290102 123 72 ; Align 290174 150 54 ; Align 290231 168 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr95NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 322 -> 388 Target range: 305627 -> 305825 323 : AspAlaValTyrGlnAlaIleTyrAspPheAspTrpTyrLysLeuGluAlaArgLysA : 342 ..!::!||| !:!! !!:! .!!..!|||||| ! ||| !.!!!:!! ! SerSerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrI 305628 : AGTAGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGA : 305685 343 : laArgGlyLeuValLeuLeuMetIleArgAlaSerGluProPheArgIleThrAlaGl : 361 !!.!||||||:!!|||:!!!!: !! !:!!|||.!.||| !!:!|||!:!||||| leHisGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGl 305686 : TACATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGG : 305742 362 : yLysValIleProLeuThrLeuThrThrPheCysSerLeuLeuLysThrSerAlaGly : 380 |||||||:!! !|||:!!|||:!!|||||| ! !:!:!! ! ! !... ... yLysValValAspLeuSerLeuSerThrPheGlyAsnValSerTyrTyrGlnTyrSer 305743 : TAAAGTAGTTGATTTATCTTTATCCACATTTGGAAACGTGAGTTACTATcaatattcc : 305799 381 : TyrIleSerPheLeuLeuAlaLys : 388 ||||||...:::::: ||| AsnIleSerIleValIleLeuLys 305800 : aatatttcaattgttatattgaaa : 305825 vulgar: CbirOr95NTE 322 388 . KQ414889.1 305627 305825 + 101 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305628 305825 101 + . gene_id 8 ; sequence CbirOr95NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305628 305825 . + . KQ414889.1 exonerate:protein2genome:local exon 305628 305825 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305628 305825 101 + . alignment_id 8 ; Query CbirOr95NTE ; Align 305628 323 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr95NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 320 -> 378 Target range: 238625 -> 238799 321 : HisCysAspAlaValTyrGlnAlaIleTyrAspPheAspTrpTyrLysLeuGluAlaA : 340 !!.||| !||| !:!!!.!:!!||| ||||||||| ! ||| ! !| GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 341 : rgLysAlaArgGlyLeuValLeuLeuMetIleArgAlaSerGluProPheArgIleTh : 359 ||!:! !! !! !|||:!!|||:!!!!:! !|||:!!!:!! ! ! !!!:!:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 360 : rAlaGlyLysValIleProLeuThrLeuThrThrPheCysSerLeuLeuLysThrSer : 378 |||||||||||||:!!! !:!!:!!||| !|||||| !!..!:!! !:!!|||!:! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 vulgar: CbirOr95NTE 320 378 . KQ414889.1 238625 238799 + 100 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238799 100 + . gene_id 9 ; sequence CbirOr95NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238799 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238799 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238799 100 + . alignment_id 9 ; Query CbirOr95NTE ; Align 238626 321 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr103NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 173 Query range: 4 -> 217 Target range: 208218 -> 208860 5 : ValValLeuAsnArgIleCysLeuGlnValPheGlyIleTrpProAspAsnAsnAspI : 24 ||| !|||||| ! |||:!!:!!.!!||| !|||||| ::!! ||| ValArgLeuAsnValTrpThrLeuLysIleIleGlySerTrpProArgSerIleAspA 208219 : GTTCGTCTGAACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATC : 208276 25 : leLysGlnArgSerLeuMetLeuAspIleArgValIlePheIleLeuIleIleIleIl : 43 !... ! !..! !! ! ! !!|||! !:!!! ! ! :!! ! ! !:!::! rgSerTrpLeuGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLe 208277 : GTTCCTGGTTAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCT : 208333 44 : eCysSerSerValIleProThrIleHisSerLeuIleArgIleTrpGlyAspPheMet : 62 ! !!! !! !|||||||||||| ! ! ! !|||! !:!! ! !|||||| uGlyPheIleValIleProThrGlyMetPheAlaIleLeuValValGluAspPheTyr 208334 : CGGTTTCATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTAC : 208390 63 : SerThrIleAspAsnLeuGlnTyrThrLeuProLeuValMetSerIleLeuLysLeuP : 82 ..! !:!! ! ! !! !... ! ! ! !!!!:!!|||:!!.!! !|||! ! AspGlnLeuLysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrV 208391 : GACCAATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACG : 208450 83 : heIleMetTrpGlnLysLysGluGluIleAlaProValLeuLysMetValLysGluAs : 101 ! |||||| ::::!!! !!:||| ! ! !:!!:!! |||:!!! || alIleMetThrValArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAs 208451 : TGATCATGACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGA : 208507 102 : pTrpLeuLysPheLysThrGluAspGluArgAsnIleMetIleArgArgAlaArgIle : 120 |||| !!!. ! :!! !|||!!:!!:|||!!.||||||:!: !!.!|||!!!.!! pTrpArgAsnValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPhe 208508 : TTGGAGAAACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTC : 208564 121 : AlaArg<->IleIleThrIleCysGlyTyrValValMetPheGlySerPheIlePheA : 139 |||||| :!:|||..!||||||||| ! !!:!! ||| ......::: AlaArgLysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrT 208565 : GCCAGGAAACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctatt : 208624 140 : laValValLeuProPhePheGlyIleSerLeuArgHisMetThrAsnIleThrAspPr : 158 :!!!.!||||||.!! ! !! !!.!:!! !.!. ! !..!! ! ! yrIleAlaLeuProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTy 208625 : acaTCGCTTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTA : 208681 159 : oGlyLysLeuMetProLeuGlnSerTyrTyrIleTyrAspIleAsnAsnSerProIle : 177 ! !!!:!|||:!: !! ! !! ! !:!||| |||:!!... !!||||||:!: rArgArgLeuValTyrProValProLysPheIleLeuAspValArgTyrSerProVal 208682 : CAGAAGGCTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTG : 208738 178 : TyrGluIleThrTyrPheIleGlnGlyIleSerLeuMetLeuAlaAlaThrValTyrS : 197 !!|||||| !||| :!!||| !:!:||| !.!.:!!||| !!.!:!! AsnGluIlePheTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrV 208739 : AATGAGATTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGG : 208798 198 : erSerThrAspAsnPheLeuGlyLeuLeuValLeuHisValCysGlyGlnLeuGluAs : 216 !.!!.!! !..!!!. !!.!||||||!.!:!!|||!.!||||||||||||:!!! alGlyAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIl 208799 : TTGGGGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGAT : 208855 217 : nLeu : 217 !||| eLeu 208856 : TTTG : 208860 vulgar: CbirOr103NTE 4 217 . KQ414889.1 208218 208860 + 173 M 118 354 G 0 3 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208219 208860 173 + . gene_id 1 ; sequence CbirOr103NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208219 208860 . + . KQ414889.1 exonerate:protein2genome:local exon 208219 208860 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208219 208860 173 + . alignment_id 1 ; Query CbirOr103NTE ; Align 208219 5 354 ; Align 208576 123 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr103NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 0 -> 217 Target range: 278570 -> 279233 1 : TyrGluTrpAlaValValLeuAsnArgIleCysLeuGlnValPheGlyIleTrpProA : 20 !:: !!::::!||| !:!!|||||| ! !|||:!! !.!!|||:!!|||||| TrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProL 278571 : TGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTC : 278628 21 : spAsnAsnAspIleLysGlnArgSerLeuMetLeuAspIleArgValIlePheIleLe : 39 !!:! ! !:!:! !..! !!!: !..!:!: !:!! !!.||| euSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSe 278629 : TCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAG : 278685 40 : uIleIleIleIleCysSerSerValIlePro<->ThrIleHisSerLeuIleArgIle : 57 ! !.!!:!:||| !!! ! !:!!:!!||| .!!:!: !!!!:!!:!! !! ! rCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLys 278686 : TTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAA : 278742 58 : TrpGlyAspPheMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuValMetS : 77 ||||||.!! !!!! !||| ! ! :!! ! ! ! !! !..!|||: ThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetA 278743 : ACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGG : 278802 78 : erIleLeuLysLeuPheIleMetTrpGlnLysLysGluGluIleAlaProValLeuLy : 96 !!! :!!|||! !!:!|||:!: !..!::: ! :!!|||!.! ! !:!!!! laThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAs 278803 : CAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAA : 278859 97 : sMetValLysGluAspTrp<-><-><->LeuLysPheLysThrGluAspGluArgAsn : 112 . :!!::: !|||||| |||..!!:!::: |||:::||||||... nAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGlu 278860 : TGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagag : 278916 113 : IleMetIleArgArgAlaArgIleAlaArgIleIleThrIleCysGlyTyrValValM : 132 ||||||! !!!!|||||||||!.!||| !:!:.!!|||! !.!! !! ! !!| IleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheM 278917 : atcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCA : 278976 133 : etPhe<->GlySerPheIlePheAlaValValLeuProPhePheGlyIleSerLeuAr : 150 ||!:! |||.!! !!.!!!:!.!!!.!|||:!!|||!!.|||!.!:!! !! !.. etTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGl 278977 : TGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGA : 279033 151 : gHisMetThrAsnIleThrAspProGlyLysLeuMetProLeuGlnSerTyrTyrIle : 169 ! !!!: !||| !|||! !..!:!! !.!.|||:!! ! !! !:!! uIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArg---GlyLeu 279034 : GATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGC---GGCCTC : 279087 170 : TyrAspIleAsnAsnSerProIleTyrGluIleThrTyrPheIleGlnGlyIleSerL : 189 !||| ..!!.!|||||| !:!||||||..! ! |||!!:||| !!:!::!! LeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaA 279088 : CTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCG : 279147 190 : euMetLeuAlaAlaThrValTyrSerSerThrAspAsnPheLeuGlyLeuLeuValLe : 208 !.!.:!! ! !:!!||| ! !.!!.!! !!:!!!.:!!!.!:!!!!!|||:! laPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMe 279148 : CGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCAT : 279204 209 : uHisValCysGlyGlnLeuGluAsnLeu : 217 !|||||||||||||||!!!..!! ||| tHisValCysGlyGlnPheArgIleLeu 279205 : GCACGTCTGTGGGCAATTCAGGATACTT : 279233 vulgar: CbirOr103NTE 0 217 . KQ414889.1 278570 279233 + 143 M 49 147 G 0 3 M 53 159 G 0 9 M 31 93 G 0 3 M 33 99 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278571 279233 143 + . gene_id 2 ; sequence CbirOr103NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278571 279233 . + . KQ414889.1 exonerate:protein2genome:local exon 278571 279233 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278571 279233 143 + . alignment_id 2 ; Query CbirOr103NTE ; Align 278571 1 147 ; Align 278721 50 159 ; Align 278889 103 93 ; Align 278985 134 99 ; Align 279084 168 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr103NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 0 -> 217 Target range: 284517 -> 286183 1 : TyrGluTrpAlaValValLeuAsnArgIleCysLeuGlnValPheGlyIleTrpProA : 20 !:: !!::::!||| !:!!|||||| ! !|||:!! !.!!|||:!!|||||| TrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProL 284518 : TGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTC : 284575 21 : spAsnAsnAspIleLysGlnArgSerLeuMetLeuAspIleArgValIlePheIleLe : 39 !!:! ! !:!:! !..! !!!: !..!:!: !:!! !!.||| euSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSe 284576 : TCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAG : 284632 40 : uIleIleIleIleCysSerSerValIlePro<->ThrIleHisSerLeuIleArgIle : 57 ! !.!!:!:||| !!! ! !:!!:!!||| .!!:!: !!!!:!!:!! !! ! rCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLys 284633 : TTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAA : 284689 58 : TrpGlyAspPheMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuValMetS : 77 ||||||.!! !!!! !||| ! ! :!! ! ! ! !! !:!!|||: ThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetA 284690 : ACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGG : 284749 78 : erIleLeuLysLeuPheIleMetTrpGlnLysLysGluGluIleAlaProValLeuLy : 96 !! :!!|||! !!:!|||:!: ..!::: ! :!!|||!.!! ! !:!!|| laAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLy 284750 : CAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAA : 284806 97 : sMetValLysGluAsp{Tr} >>>> Target Intron 1 >>>> {p}LeuLys : 104 | :!!:::! !|||{||} 1012 bp {|}|||..! sAspIleArgAlaAsp{Tr}++ +-{p}LeuSer 284807 : GGACATTCGTGCGGAC{TG}gt.........................ac{G}CTTTCG : 285842 105 : PheLysThrGluAspGluArgAsnIleMetIleArgArgAlaArgIleAlaArgIleI : 124 !!.. |||:::||||||...||||||! !!!!|||||||||!.!||| !: HisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerL 285843 : CATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTT : 285902 125 : leThrIle<->CysGlyTyrValValMetPheGlySerPheIlePheAlaValValLe : 142 !:.!!||| |||!.! ! !!:!! ! !|||.!!|||.!!!:!.!!..!|||:! euAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMe 285903 : TGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGAT : 285959 143 : uProPhePheGlyIleSerLeuArgHisMetThrAsnIleThrAspProGlyLysLeu : 161 !|||!!.! ! !:!! !! !..! !!!: !||| |||! !..!:!! ! tProLeuCysThrValArgThrGluIleIleAspAsnGluThrValArgSerGlnAla 285960 : GCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCG : 286016 162 : MetProLeuGlnSerTyrTyrIleTyrAspIleAsnAsnSerProIleTyrGluIleT : 181 .!.|||:!! ! !! !:!! !||| ..!!.!|||||| !:!||||||. PheProIleTyrArg---GlyLeuLeuAspProArgThrSerProSerPheGluIleV 286017 : TTCCCGATCTATCGC---GGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCG : 286073 182 : hrTyrPheIleGlnGlyIleSerLeuMetLeuAlaAlaThrValTyrSerSerThrAs : 200 .! ! |||!!:||| !!:!::!! !.!.:!! ! !:!!||| ! !.!!.!! alGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCy 286074 : TGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTG : 286130 201 : pAsnPheLeuGlyLeuLeuValLeuHisValCysGlyGlnLeuGluAsnLeu : 217 !!:!!!. !!.!:!!!!!|||:!!|||||||||||||||!!!..!! ||| sSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeu 286131 : CAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTT : 286183 vulgar: CbirOr103NTE 0 217 . KQ414889.1 284517 286183 + 141 M 49 147 G 0 3 M 52 156 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 24 72 G 0 3 M 40 120 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284518 286183 141 + . gene_id 3 ; sequence CbirOr103NTE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284518 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284518 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286183 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286183 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284518 286183 141 + . alignment_id 3 ; Query CbirOr103NTE ; Align 284518 1 147 ; Align 284668 50 156 ; Align 285839 103 72 ; Align 285914 127 120 ; Align 286034 168 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr103NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 1 -> 217 Target range: 259769 -> 260420 2 : GluTrpAlaValValLeuAsnArgIleCysLeuGlnValPheGlyIleTrpProAspA : 21 !!:!::::!:!! !!!!|||||| ! !|||:!! !.!.||| !|||||| !: AspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS 259770 : GACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTT : 259827 22 : snAsnAspIleLysGlnArgSerLeuMetLeuAspIleArgValIlePheIleLeuIl : 40 ::::!..!! ! ::!! !..! !!!::!!..!:!!! !:!!|||||||||! ! erSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTy 259828 : CATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTA : 259884 41 : eIleIleIleCysSerSerValIleProThrIleHisSerLeuIleArgIleTrpGly : 59 !! !! !||| !!!!:!!|||||| !:!!! ! !:!!:!!! ! !! ! rSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGlu 259885 : CAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAG : 259941 60 : AspPheMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuValMetSerIleL : 79 ..!!!. ! !! !! ! ||| ! ! !! !! ! !!:!:.!! !: SerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysI 259942 : AGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTA : 260001 80 : euLysLeuPheIleMetTrpGlnLysLysGluGluIleAlaProValLeuLysMetVa : 98 !!!!.! ! ! :!!! ! !!:! ..!!!:||| ! ! !:!!:!! || leAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisVa 260002 : TTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGT : 260058 99 : lLysGluAspTrpLeuLysPheLysThrGluAspGluArgAsnIleMetIleArgArg : 117 |:!!.!.|||||| !! .!.! !! !||| ! !!:!:!|||:!:|||:!:||| ! lGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyr 260059 : GGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATAC : 260115 118 : AlaArgIleAlaArgIleIleThrIleCysGlyTyrValValMetPheGlySerPheI : 137 |||!:!.!!!.!||| !:!!.!! !! ! !! !.! !!:!! |||.!! !!: AlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValL 260116 : GCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTC : 260175 138 : lePheAlaValValLeuProPhePheGlyIleSerLeuArgHisMetThrAsnIleTh : 156 !:! ! ! !:!!:!! !! ! !!..!!! !..!:!!! !!!.:!! !||| || euCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluTh 260176 : TGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGAC : 260232 157 : rAspProGlyLysLeuMetProLeuGlnSerTyr<->TyrIleTyrAspIleAsnAsn : 174 | !! ! ! |||:!!|||! ! ! !||| ! :!: :!!:!:|||:!! rArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAsp 260233 : GAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGAC : 260289 175 : SerProIleTyrGluIleThrTyrPheIleGlnGlyIleSerLeuMetLeuAlaAlaT : 194 ||||||!!: !!||||||..! ! !!:!:||| !:!!||| !.!.:!!!.! !: SerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnS 260290 : AGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATT : 260349 195 : hrValTyrSerSerThrAspAsnPheLeuGlyLeuLeuValLeuHisValCysGlyGl : 213 !! ! ! !.!!! ! !!:!.!! !!.!:!!|||..! !|||!.!|||||||| erSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGl 260350 : CGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCA : 260406 214 : nLeuGluAsnLeu : 217 ||||.!. ||| nLeuAsnValLeu 260407 : GTTGAACGTGCTC : 260420 vulgar: CbirOr103NTE 1 217 . KQ414889.1 259769 260420 + 136 M 166 498 G 0 3 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259770 260420 136 + . gene_id 4 ; sequence CbirOr103NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259770 260420 . + . KQ414889.1 exonerate:protein2genome:local exon 259770 260420 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259770 260420 136 + . alignment_id 4 ; Query CbirOr103NTE ; Align 259770 2 498 ; Align 260271 168 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr103NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 0 -> 214 Target range: 232453 -> 233098 1 : TyrGluTrpAlaValValLeuAsnArgIleCysLeuGlnValPheGlyIleTrpProA : 20 ||||||!::::!:!! !:!!|||||| ! !||| ! !.!.||| !|||||| TyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProA 232454 : TACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGC : 232511 21 : spAsnAsnAspIleLysGlnArgSerLeuMetLeuAspIleArgValIlePheIleLe : 39 ! !!..!!:! !..!::! !..!! !:!:|||! ! !! !:!!! !.!!! !! rgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCy 232512 : GTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTG : 232568 40 : uIleIleIleIleCysSerSerValIleProThrIleHisSerLeuIleArgIleTrp : 58 ! ! !:!:!!: !||||||:!!:!!||| !|||! ! !:!!:!: ! ! sHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAsp 232569 : TCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGAC : 232625 59 : GlyAspPheMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuValMetSerI : 78 !..!.!. !..!! !!!: ! ::!:!! !! ! !! !!!!:!!|||.!! ThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyG 232626 : ACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTG : 232685 79 : leLeuLysLeuPheIleMetTrpGlnLysLysGluGluIleAlaProValLeuLysMe : 97 !|||!!.! !! ! !:!!! ! !||| !.!.!!:||| ! ! !:!!:!!.. luLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGl 232686 : AATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACA : 232742 98 : tValLysGluAspTrpLeuLysPheLysThrGluAspGluArgAsnIleMetIleArg : 116 !||||||:!!||||||! !!!. !!|||! ! ! !.!.|||:!!:!:|||:!:!:! nValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLys 232743 : GGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAG : 232799 117 : ArgAlaArgIleAlaArgIleIleThrIleCysGlyTyrValValMetPheGlySerP : 136 !.!|||!:!:!!!.!||| |||.!! ! !!.! !! !||| ! !.!! AsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyV 232800 : AACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTG : 232859 137 : heIlePheAlaValValLeuProPhePheGlyIleSerLeuArgHisMetThrAsnIl : 155 !! !! !! !! !:!!:!! !! .!! !!!!:||| ! !:!!:!! !||| alGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGl 232860 : TCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGA : 232916 156 : eThrAspProGlyLysLeuMetProLeuGlnSerTyr<->TyrIleTyrAspIleAsn : 173 !:! !! !! ! ! ! !:!:|||! ! !! !||| ! :!: |||! !!.. uSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArg 232917 : GAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGA : 232973 174 : AsnSerProIleTyrGluIleThrTyrPheIleGlnGlyIleSerLeuMetLeuAlaA : 193 !||||||! !!||||||! !!:! !!:!!||| !!:!!||| !.!.:!!!.! PheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValA 232974 : TTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGA : 233033 194 : laThrValTyrSerSerThrAspAsnPheLeuGlyLeuLeuValLeuHisValCysGl : 212 !:!!||| ! !.!!.!! !..!!!. !!.!:!!|||!.!:!!|||!.!||||| snSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGl 233034 : ACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGG : 233090 213 : yGlnLeu : 214 ||||||| yGlnLeu 233091 : ACAGCTG : 233098 vulgar: CbirOr103NTE 0 214 . KQ414889.1 232453 233098 + 129 M 167 501 G 0 3 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232454 233098 129 + . gene_id 5 ; sequence CbirOr103NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232454 233098 . + . KQ414889.1 exonerate:protein2genome:local exon 232454 233098 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232454 233098 129 + . alignment_id 5 ; Query CbirOr103NTE ; Align 232454 1 501 ; Align 232958 168 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr103NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 1 -> 220 Target range: 194168 -> 194819 2 : GluTrpAlaValValLeuAsnArgIleCysLeuGlnValPheGlyIleTrpProAspA : 21 |||!::|||||| !:!! !:! !||| ! !.!!|||||||||||| . GluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProArgG 194169 : GAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAAGGG : 194226 22 : snAsnAspIleLysGlnArgSerLeuMetLeuAspIleArgValIlePheIleLeuIl : 40 !.:!!..!:!!:::.!.||| !! !:!! .!! ! !! ! !:!::!!.! luAspSerLeuArgAspArgValArgLeu------PheAlaGlnThrGlyValValPh 194227 : AGGATTCTCTTCGCGACAGAGTCCGACTG------TTCGCTCAAACTGGCGTGGTCTT : 194277 41 : eIleIleIleCysSerSerValIleProThrIleHisSerLeuIleArgIleTrpGly : 59 ! !:!:!!:|||! ! !:!!:!!||| !:!: !! ! ! ! ! !!! ! ! eAlaLeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCysGlu 194278 : CGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAG : 194334 60 : AspPheMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuValMetSerIleL : 79 |||.!.! !!!! !!!: ! :!! ! !:!! ! !:!!:!!:!!|||: AspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleI 194335 : GATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCA : 194394 80 : euLysLeuPheIleMetTrpGlnLysLysGluGluIleAlaProValLeuLysMetVa : 98 !!|||!!!!::! ||| !!!.!:!:!!|||||| ! ! !||| ! !:! leLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGluMe 194395 : TCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGAT : 194451 99 : lLysGluAspTrpLeuLysPheLysThrGluAspGluArgAsnIleMetIleArgArg : 117 !:!! !.!.!:: ! ! ! :!! !|||!!:!!:|||.!.:!:|||! !.! !! tGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsnCys 194452 : GGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGC : 194508 118 : AlaArgIleAlaArgIleIleThrIleCysGlyTyrValValMetPheGlySerPheI : 137 |||!:!|||!.!|||.!!.!!|||! ! !! ! !:!! !:!|||.!! !: AlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaL 194509 : GCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTT : 194568 138 : le<->PheAlaValValLeuProPhePheGlyIleSerLeuArgHisMetThrAsnIl : 155 !: !:! !:!!:!!||||||.!..!...! !!!:!! ! ! ! !|||! euProTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGluAspAsnSe 194569 : TGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAACAG : 194625 156 : eThrAspProGlyLysLeuMetProLeuGlnSerTyrTyrIleTyrAspIleAsnAsn : 174 !|||.!. ! ||| !|||...!:!||| !.!!!:!! |||.!.:!! rThrGlnIle---ProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAsp 194626 : TACTCAGATA---CCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGAC : 194679 175 : SerProIleTyrGluIleThrTyrPheIleGlnGlyIleSerLeuMetLeuAlaAlaT : 194 |||||||||||||||||||||!:! !! ||| !:!:! ! !! :!! ! !: SerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuS 194680 : TCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGT : 194739 195 : hrValTyrSerSerThrAspAsnPheLeuGlyLeuLeuValLeuHisValCysGlyGl : 213 !!..! !!!!!.!!! ! !!!:!!!.:!!!.! !:!!:!!:!!||| !|||||| erThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGlyLe 194740 : CGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTT : 194796 214 : nLeuGluAsnLeuArgLysArg : 220 !!!!||| !!!!!:!||| uPheGluValThrSerArgArg 194797 : GTTCGAAGTGACCAGCAGAAGG : 194819 vulgar: CbirOr103NTE 1 220 . KQ414889.1 194168 194819 + 126 M 29 87 G 2 0 M 105 315 G 0 3 M 21 63 G 1 0 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194169 194819 126 + . gene_id 6 ; sequence CbirOr103NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194169 194819 . + . KQ414889.1 exonerate:protein2genome:local exon 194169 194819 . + . insertions 3 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 194169 194819 126 + . alignment_id 6 ; Query CbirOr103NTE ; Align 194169 2 87 ; Align 194256 33 315 ; Align 194574 138 63 ; Align 194637 160 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr103NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 3 -> 214 Target range: 212875 -> 213511 4 : AlaValValLeuAsnArgIleCysLeuGlnValPheGlyIleTrpProAspAsnAsnA : 23 :::::: !! !|||||| !|||:!! ! |||:!:|||||||||!!.::! SerIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspLysSerT 212876 : agtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCT : 212933 24 : spIleLysGlnArgSerLeuMetLeuAspIleArgValIlePheIleLeuIleIleIl : 42 !!:!!..!! !! !..! !! :!!! ! ! !|||! ! !:!!! ! ! !:! yrValSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLe 212934 : ACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTT : 212990 43 : eIleCysSerSerValIleProThrIleHisSerLeuIleArgIleTrpGlyAspPhe : 61 :||| !!! ! !||||||||| !! ! ! !:!!.!!! ! ! :::... uIleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGluAsnIle 212991 : GATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatata : 213047 62 : MetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuValMetSerIleLeuLysL : 81 ...... |||!!: !!! ! ! ! !! !||| :!!:!:! !|||! PheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysT 213048 : tttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGT : 213107 82 : euPheIleMetTrpGlnLysLysGluGluIleAlaProValLeuLysMetValLysGl : 100 ! ! :!! ! ! !!:!!:||| ! !! !:!!:!! :!!||| ! yrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMetLysTy 213108 : ATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATA : 213164 101 : uAspTrpLeuLysPheLysThrGluAspGluArgAsnIleMetIleArgArgAlaArg : 119 |||||| !!!..!!! ! !|||!!:!!:!:!.!.|||||| !!.!|||!!! rAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSer 213165 : TGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGC : 213221 120 : IleAla<->ArgIleIleThrIleCysGlyTyrValValMetPheGlySerPheIleP : 138 .!!!.! ||||||:!:|||||||||!.!!:! !!:!! |||! ! .!!! PheGlyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheThrPheT 213222 : TTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTT : 213281 139 : heAlaValValLeuProPhePheGlyIleSerLeuArgHisMetThrAsnIleThrAs : 157 :! !:!!|||:!!|||.!! !!.! !!.!:!! ! ! ! !! !..! yrPheLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAsnValTh 213282 : ATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGAC : 213338 158 : pProGlyLysLeuMetProLeuGlnSerTyrTyrIleTyrAspIleAsnAsnSerPro : 176 ! !!:!!:!!:!! !! ! ||| !:!||| !|||:!!... !!|||||| rPheArgGlnMetValValProValSerArgPheIleValAspValArgTyrSerPro 213339 : ATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCT : 213395 177 : IleTyrGluIleThrTyrPheIleGlnGlyIleSerLeuMetLeuAlaAlaThrValT : 196 :!: !!|||||| !!:!!!.|||||| !|||:!! !:!:||| ! !.!!:!! ValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleA 213396 : GTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTG : 213455 197 : yrSerSerThrAspAsnPheLeuGlyLeuLeuValLeuHisValCysGlyGlnLeu : 214 ! !.!! !!:!!!. !!.!:!!!!!!.!:!!|||!.!|||||||||:!! laValValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMet 213456 : CGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATG : 213511 vulgar: CbirOr103NTE 3 214 . KQ414889.1 212875 213511 + 125 M 118 354 G 0 3 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212876 213511 125 + . gene_id 7 ; sequence CbirOr103NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212876 213511 . + . KQ414889.1 exonerate:protein2genome:local exon 212876 213511 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212876 213511 125 + . alignment_id 7 ; Query CbirOr103NTE ; Align 212876 4 354 ; Align 213233 122 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr103NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 1 -> 217 Target range: 262846 -> 263497 2 : GluTrpAlaValValLeuAsnArgIleCysLeuGlnValPheGlyIleTrpProAspA : 21 !!:!::::!:!! !:!!|||||| |||:!! !.!!||| !|||||| : AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 22 : snAsnAspIleLysGlnArgSerLeuMetLeuAspIleArgValIlePheIleLeuIl : 40 :! !...|||..!::!! !..!! !!!::!! .!!! !:!!||| !!:!!! ! erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 41 : eIleIleIleCysSerSerValIleProThrIleHisSerLeuIleArgIleTrpGly : 59 ! !:!!||| |||!!!|||||||||:!!|||! ! !:!!:!!! ! ! ! ! rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 60 : AspPheMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuValMetSerIleL : 79 :!!||| ! !! !:!:.!. !||| ! !! !! ! !!:!:.!!!!:: AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 80 : euLysLeuPheIleMetTrpGlnLysLysGluGluIleAlaProValLeuLysMetVa : 98 !!!!.! ! ! :!!! !! ! !..:!!!!:||| ! ! !:!!:!! || leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 99 : lLysGluAspTrpLeuLysPheLysThrGluAspGluArgAsnIleMetIleArgArg : 117 |:!!|||||||||! !! ! ! ! ! !!!:!!:!:!..!||||||:!:!:!!.! lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 118 : AlaArgIleAlaArgIleIleThrIleCysGlyTyrValValMetPheGlySerPheI : 137 |||!:! !!.!||| !:!:.!! !! ! !! :!! !!||| !|||.!!! AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 138 : lePheAlaValValLeuProPhePheGlyIleSerLeuArgHisMetThrAsnIleTh : 156 !:! ! ! !:!!:!! !! ||| !! !..!:!!! !.!. !||| || etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 157 : rAspProGlyLysLeuMetProLeuGlnSerTyr<->TyrIleTyrAspIleAsnAsn : 174 | ! !::::!!:!:|||! !! ! !||| ! ||| ! :!!:!!!.. rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 175 : SerProIleTyrGluIleThrTyrPheIleGlnGlyIleSerLeuMetLeuAlaAlaT : 194 !:!|||! !!|||||| ! ! !! ||| !:!:||| !.!.:!!!.!.!!. AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 195 : hrValTyrSerSerThrAspAsnPheLeuGlyLeuLeuValLeuHisValCysGlyGl : 213 !!..! ! !.!!.!! !..!.!. !!.!:!!!!!!.! !|||!.!|||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 214 : nLeuGluAsnLeu : 217 ||||.!. ||| nLeuAsnValLeu 263484 : GTTGAACGTGTTG : 263497 vulgar: CbirOr103NTE 1 217 . KQ414889.1 262846 263497 + 123 M 166 498 G 0 3 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 263497 123 + . gene_id 8 ; sequence CbirOr103NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262847 263497 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263497 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262847 263497 123 + . alignment_id 8 ; Query CbirOr103NTE ; Align 262847 2 498 ; Align 263348 168 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr103NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 1 -> 217 Target range: 266634 -> 267285 2 : GluTrpAlaValValLeuAsnArgIleCysLeuGlnValPheGlyIleTrpProAspA : 21 !!:!::::!:!! !||||||||| ! !|||:!! !.!.||| !|||||| AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProL 266635 : GATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGT : 266692 22 : snAsnAspIleLysGlnArgSerLeuMetLeuAspIleArgValIlePheIleLeuIl : 40 ::: !! !...:!!! !..!! !!!::!!..! ! !:!!||| !!|||! ! euSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266693 : TGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 41 : eIleIleIleCysSerSerValIleProThrIleHisSerLeuIleArgIleTrpGly : 59 ! ! !||| ! !!!!||||||||| !:!: ! !|||:!!! ! ! ! rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 60 : AspPheMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuValMetSerIleL : 79 ..!.!! !!!! !:!: ! !!! ! ! !! !! ! !!:!:.!! !: SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 80 : euLysLeuPheIleMetTrpGlnLysLysGluGluIleAlaProValLeuLysMetVa : 98 !!!!.! ! !! !:!!! !! !:::!..:!!|||||| ! ! !:!!:!! :! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 99 : lLysGluAspTrpLeuLysPheLysThrGluAspGluArgAsnIleMetIleArgArg : 117 !:!! !|||||| !! ! ! ! ! !!!:!!:!:!.!.:!:|||:!:!:!!.! tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 118 : AlaArgIleAlaArgIleIleThrIleCysGlyTyrValValMetPheGlySerPheI : 137 |||||||||!.!||| !|||.!!|||! ! !! !.! !!||| !!.!! !!: AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 138 : lePheAlaValValLeuProPhePheGlyIleSerLeuArgHisMetThrAsnIleTh : 156 !! ! ! !|||:!! !! ||| !!!:..! ! !.!.:!: !||| || euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 157 : rAspProGlyLysLeuMetProLeuGlnSerTyr<->TyrIleTyrAspIleAsnAsn : 174 | !! ! ! |||:!!|||! ! ! !||| ! !!: !! :!!:!!!.! rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 175 : SerProIleTyrGluIleThrTyrPheIleGlnGlyIleSerLeuMetLeuAlaAlaT : 194 ||||||! !!||||||..! ! !! !||| !:!!||| !.!.:!!!.! !: SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 195 : hrValTyrSerSerThrAspAsnPheLeuGlyLeuLeuValLeuHisValCysGlyGl : 213 !! ! ! !.!!.!! !!:!.!! !!.!:!!!!!!.! !|||!.!|||||||| erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 214 : nLeuGluAsnLeu : 217 ||||... ||| nLeuSerValLeu 267272 : GCTGAGCGTGCTG : 267285 vulgar: CbirOr103NTE 1 217 . KQ414889.1 266634 267285 + 112 M 166 498 G 0 3 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266635 267285 112 + . gene_id 9 ; sequence CbirOr103NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266635 267285 . + . KQ414889.1 exonerate:protein2genome:local exon 266635 267285 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266635 267285 112 + . alignment_id 9 ; Query CbirOr103NTE ; Align 266635 2 498 ; Align 267136 168 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr103NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 324 -> 371 Target range: 206260 -> 206401 325 : AlaAlaCysGluTyrLysTrpTyrGluLeuGlnProLysGlnValGlnSerLeuLeuI : 344 .!!:!!||| ! !!.||||||...|||! ! !!:!!!.!.!!::|||:!!:!!: ThrSerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleL 206261 : ACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATAC : 206318 345 : leIleMetValHisAlaAsnArgProLeuTyrLeuThrAlaGlyLysLeuPheProMe : 363 !:|||!!:!.! :!!||| !|||:!! ! |||||||||||||||:!!||| !|| euIleIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMe 206319 : TGATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAAT : 206375 364 : tThrMetSerThrPheCysAsnMet : 371 |:!!:!::!!!:!||| !:!!:!: tSerLeuAlaSerPheThrAspVal 206376 : GTCTTTAGCTAGTTTCACCGATGTA : 206401 vulgar: CbirOr103NTE 324 371 . KQ414889.1 206260 206401 + 103 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206261 206401 103 + . gene_id 10 ; sequence CbirOr103NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206261 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206261 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206261 206401 103 + . alignment_id 10 ; Query CbirOr103NTE ; Align 206261 325 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr106NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 1 -> 225 Target range: 232453 -> 233128 2 : TyrGluTrpAlaThrGluLeuAsnArgIleAsnLeuThrLeuLeuGlyLeuTrpProG : 21 ||||||!::::!! !:!!:!!|||||| !||||||! !:!!||| !||||||. TyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProA 232454 : TACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGC : 232511 22 : luAsnAsnGluThrLysGlnLysLysLeuMetSerAspIleArgValIleLeuIlePh : 40 .. !!..||||||..!::! :!!! !:!: !! ! !! !:!!! !|||! !! rgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCy 232512 : GTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTG : 232568 41 : eAsnIleIlePheTrpSerCysIleIleProThrLeuHisSerLeuLeuLysIleTyr : 59 !:!! !:!:.!. |||! |||:!!||| !:!!! ! !:!!||| ! !! sHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAsp 232569 : TCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGAC : 232625 60 : AspAspIleMetSerValIleAspAsnLeuGlnTyrThrLeuProPheLeuIleAlaV : 79 ..!:!! !..! !!!: ! ::!:!! !! ! !! !||||||!!:!.!! ThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyG 232626 : ACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTG : 232685 80 : alIleLysLeuPheIleIleTrpGlnLysLysTyrGluValLeuProLeuLeuAsnMe : 98 !:!:!!.! !! ! !:!:! ! !||| ! !!!!::!!||| !! !:!!.!... luLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGl 232686 : AATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACA : 232742 99 : tIleLysAspAspTrpLeuArgProLysThrSerLysGluArgAsnValMetLeuLys : 117 !:!:|||.!.||||||! !!.! !|||! ! !! .!.|||:!!:!!||||||||| nValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLys 232743 : GGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAG : 232799 118 : GlnAlaArgIleAlaArgIlePheThrIlePheGlyPheLeuLeuIleGlnIleSerA : 137 .!.|||!:!:!!!.!||| .!..!! !.!!!.! !!!! !!!:!!.! !.!!! AsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyV 232800 : AACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTG : 232859 138 : laIleIleValLeuPheLeuProLeuPheGlyIleSerMetArgTyrThrThrAsnAr : 156 .! ! !! ! !.!.:!! !! !.!! !!!!:|||! ! !|||..! !|||.. alGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGl 232860 : TCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGA : 232916 157 : gThrAspProGlyArgMetLeuProLeuGlnThrTyr<->TyrLeuTyrAsnValAsn : 174 !!:! !! !! ! ! !||||||! ! ! !||| ! ||| :!!..!!.. uSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArg 232917 : GAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGA : 232973 175 : SerSerProLeuTyrGluIleThrPhePheLeuGlnSerPheSerValMetAlaGlyS : 194 ! !|||||| ! !!||||||! !||| !!||||||!!!.!!|||! !.!. !! !! PheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValA 232974 : TTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGA : 233033 195 : erThrMetTyrSerGlyThrAspThrPheMetSerValIleValPheHisValCysGl : 213 :!:!!:!: ! !|||.!! ! !!!. :!!|||:!!!.!.!.|||!.!||||| snSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGl 233034 : ACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGG : 233090 214 : yGlnLeuGluAsnLeuLysThrArgIleArgThrLeu : 225 |||||||.!. :!!! !:!!!:!:!: ! !||| yGlnLeuAsnValValMetSerLysLeuAspAspLeu 233091 : ACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTG : 233128 vulgar: CbirOr106NTE 1 225 . KQ414889.1 232453 233128 + 157 M 167 501 G 0 3 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232454 233128 157 + . gene_id 1 ; sequence CbirOr106NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232454 233128 . + . KQ414889.1 exonerate:protein2genome:local exon 232454 233128 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232454 233128 157 + . alignment_id 1 ; Query CbirOr106NTE ; Align 232454 2 501 ; Align 232958 169 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr106NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 2 -> 218 Target range: 259769 -> 260420 3 : GluTrpAlaThrGluLeuAsnArgIleAsnLeuThrLeuLeuGlyLeuTrpProGluA : 22 !!:!::::! !:!!!!!|||||| !|||! !! !:!!||| !|||||| : AspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS 259770 : GACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTT : 259827 23 : snAsnGluThrLysGlnLysLysLeuMetSerAspIleArgValIleLeuIlePheAs : 41 ::::!...|||! ::! :!! !!!:! !..!:!!! !:!!|||!!!|||! ! ! erSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTy 259828 : CATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTA : 259884 42 : nIleIlePheTrpSerCysIleIleProThrLeuHisSerLeuLeuLysIleTyrAsp : 60 !! !! !.!. ! ! !:!:|||||| !:!!! ! !:!!||| ! !!: rSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGlu 259885 : CAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAG : 259941 61 : AspIleMetSerValIleAspAsnLeuGlnTyrThrLeuProPheLeuIleAlaValI : 80 ..!:!: ! ! !! ! ||| ! ! !! !!::!!!:!!!.! !| SerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysI 259942 : AGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTA : 260001 81 : leLysLeuPheIleIleTrpGlnLysLysTyrGluValLeuProLeuLeuAsnMetIl : 99 ||!!.! ! ! :!:! ! !!:! !!::!!||| !! !:!!.!. :! leAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisVa 260002 : TTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGT : 260058 100 : eLysAspAspTrpLeuArgProLysThrSerLysGluArgAsnValMetLeuLysGln : 118 ::!!:!!|||||| !! ! !! !! !..!|||!!:!:!||||||||||||!:! ! lGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyr 260059 : GGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATAC : 260115 119 : AlaArgIleAlaArgIlePheThrIlePheGlyPheLeuLeuIleGlnIleSerAlaI : 138 |||!:!.!!!.!||| ! !!.!! !! ! !! !!!!:!:||| !.!!!.!: AlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValL 260116 : GCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTC : 260175 139 : leIleValLeuPheLeuProLeuPheGlyIleSerMetArgTyrThrThrAsnArgTh : 157 !: ! !!! !!!.:!! !!:!!!!..!!! !..!:!!! ! ! ..! !|||..!|| euCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluTh 260176 : TGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGAC : 260232 158 : rAspProGlyArgMetLeuProLeuGlnThrTyr<->TyrLeuTyrAsnValAsnSer : 175 | !! !!.!:!!||||||! ! !..!||| ! ||| |||||||||..! rArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAsp 260233 : GAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGAC : 260289 176 : SerProLeuTyrGluIleThrPhePheLeuGlnSerPheSerValMetAlaGlySerT : 195 ||||||:!! !!||||||..!.!! !!:!!|||! ! !!|||! !.!. !! !!:!: SerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnS 260290 : AGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATT : 260349 196 : hrMetTyrSerGlyThrAspThrPheMetSerValIleValPheHisValCysGlyGl : 214 !!! ! !|||! ! !!:!.!! !:!!|||:!:..! !|||!.!|||||||| erSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGl 260350 : CGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCA : 260406 215 : nLeuGluAsnLeu : 218 ||||.!. ||| nLeuAsnValLeu 260407 : GTTGAACGTGCTC : 260420 vulgar: CbirOr106NTE 2 218 . KQ414889.1 259769 260420 + 152 M 166 498 G 0 3 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259770 260420 152 + . gene_id 2 ; sequence CbirOr106NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259770 260420 . + . KQ414889.1 exonerate:protein2genome:local exon 259770 260420 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259770 260420 152 + . alignment_id 2 ; Query CbirOr106NTE ; Align 259770 3 498 ; Align 260271 169 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr106NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 2 -> 223 Target range: 266634 -> 267300 3 : GluTrpAlaThrGluLeuAsnArgIleAsnLeuThrLeuLeuGlyLeuTrpProGluA : 22 !!:!::::! !:!!||||||||| !|||! !! !:!!||| !|||||| ! AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProL 266635 : GATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGT : 266692 23 : snAsnGluThrLysGlnLysLysLeuMetSerAspIleArgValIleLeuIlePheAs : 41 ::: |||...:!! :!!! !!!: !..! ! !:!!|||:!!|||! ! ! euSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266693 : TGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 42 : nIleIlePheTrpSerCysIleIleProThrLeuHisSerLeuLeuLysIleTyrAsp : 60 ! ! !.!. !! ! !:!!|||||| !||| ! !|||:!! ! !!!!: rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 61 : AspIleMetSerValIleAspAsnLeuGlnTyrThrLeuProPheLeuIleAlaValI : 80 ..!||| !!! !:!: ! !!! ! ! !! !!::!!!:!!!.!! !| SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 81 : leLysLeuPheIleIleTrpGlnLysLysTyrGluValLeuProLeuLeuAsnMetIl : 99 ||!!.! ! !! !:!:! !! !:::!.. ! |||:!!! ! !! !:!!.!. !! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 100 : eLysAspAspTrpLeuArgProLysThrSerLysGluArgAsnValMetLeuLysGln : 118 ::!! |||||| !! ! !! ! ! !!:!!!!:!:!.!.||||||||||||.!. tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 119 : AlaArgIleAlaArgIlePheThrIlePheGlyPheLeuLeuIleGlnIleSerAlaI : 138 |||||||||!.!||| !.!!.!!|||||| !! !!!!!!:||| !.!!!.!: AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 139 : leIleValLeuPheLeuProLeuPheGlyIleSerMetArgTyrThrThrAsnArgTh : 157 !! ! !! ! ! :!! !! !||| !!!:..!! ! ! ..! !|||..!|| euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 158 : rAspProGlyArgMetLeuProLeuGlnThrTyr<->TyrLeuTyrAsnValAsnSer : 175 | !! !!.!:!!||||||! ! !..!||| ! :!! ! |||:!!!!! rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 176 : SerProLeuTyrGluIleThrPhePheLeuGlnSerPheSerValMetAlaGlySerT : 195 |||||| ! !!||||||..!.!! !!! !|||! ! ! |||! !.!. !! !!:!: SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 196 : hrMetTyrSerGlyThrAspThrPheMetSerValIleValPheHisValCysGlyGl : 214 !!! ! !|||.!! !!:!.!! :!!|||.!!!.! !|||!.!|||||||| erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 215 : nLeuGluAsnLeuLysThrArgIleArg : 223 ||||... |||! !! ! !!|||!:! nLeuSerValLeuMetMetTrpIleLys 267272 : GCTGAGCGTGCTGATGATGTGGATCAAG : 267300 vulgar: CbirOr106NTE 2 223 . KQ414889.1 266634 267300 + 144 M 166 498 G 0 3 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266635 267300 144 + . gene_id 3 ; sequence CbirOr106NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266635 267300 . + . KQ414889.1 exonerate:protein2genome:local exon 266635 267300 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266635 267300 144 + . alignment_id 3 ; Query CbirOr106NTE ; Align 266635 3 498 ; Align 267136 169 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr106NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 1 -> 225 Target range: 278570 -> 279254 2 : TyrGluTrpAlaThrGluLeuAsnArgIleAsnLeuThrLeuLeuGlyLeuTrpProG : 21 !:: !!::::!..!:!!:!!|||||| !|||! !! !:!!|||:!!|||||| TrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProL 278571 : TGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTC : 278628 22 : luAsnAsnGluThrLysGlnLysLysLeuMetSerAspIleArgValIleLeuIlePh : 40 !:! ! ..!! !:!! !!!:|||..!:!: !:!! |||||| euSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSe 278629 : TCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAG : 278685 41 : eAsnIleIlePheTrpSerCysIleIlePro<->ThrLeuHisSerLeuLeuLysIle : 58 ! !.!!:!:.!. ! ! ! !:!::!!||| .!!||| !!!!:!!||| ! ! ! rCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLys 278686 : TTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAA : 278742 59 : TyrAspAspIleMetSerValIleAspAsnLeuGlnTyrThrLeuProPheLeuIleA : 78 !! !|||:!! !!! !||| ! ! :!! ! ! ! !! ! !!!:| ThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetA 278743 : ACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGG : 278802 79 : laValIleLysLeuPheIleIleTrpGlnLysLysTyrGluValLeuProLeuLeuAs : 97 ||..!||||||! !!:!|||:!! !..!::: !:!!:!! ! !! !:!!|| laThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAs 278803 : CAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAA : 278859 98 : nMetIleLysAspAspTrp<-><-><->LeuArgProLysThrSerLysGluArgAsn : 113 | |||::: |||||| ||| ! !::: ...:::||||||... nAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGlu 278860 : TGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagag : 278916 114 : ValMetLeuLysGlnAlaArgIleAlaArgIlePheThrIlePheGlyPheLeuLeuI : 133 :::||| ! ! ...|||||||||!.!||| !!!..!!||||||.!! ! !!!!! IleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheM 278917 : atcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCA : 278976 134 : leGlnIleSerAlaIleIle<->ValLeuPheLeuProLeuPheGlyIleSerMetAr : 151 !: ! !.!!!.!:!!.!! ..! ! ! :!!|||||||||!.!:!! !!! !.. etTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGl 278977 : TGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGA : 279033 152 : gTyrThrThrAsnArgThrAspProGlyArgMetLeuProLeuGlnThrTyrTyrLeu : 170 ! !! ! !|||..!|||! !..!!:! !!!!|||:!! ! ! !||| uIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArg---GlyLeu 279034 : GATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGC---GGCCTC : 279087 171 : TyrAsnValAsnSerSerProLeuTyrGluIleThrPhePheLeuGlnSerPheSerV : 190 !:!! !..!!!!||||||! !!:!||||||..! |||:!!|||!!!!!.:!!! LeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaA 279088 : CTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCG : 279147 191 : alMetAlaGlySerThrMetTyrSerGlyThrAspThrPheMetSerValIleValPh : 209 .!.!.!.! !! !:!!:!: ! !|||.!! !!:!!!.!!::!!|||.!!|||.! laPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMe 279148 : CGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCAT : 279204 210 : eHisValCysGlyGlnLeuGluAsnLeuLysThrArgIleArgThrLeu : 225 .|||||||||||||||!!!..!! ||| !|||!:!:!: !! !||| tHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeu 279205 : GCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTC : 279254 vulgar: CbirOr106NTE 1 225 . KQ414889.1 278570 279254 + 132 M 49 147 G 0 3 M 53 159 G 0 9 M 36 108 G 0 3 M 28 84 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278571 279254 132 + . gene_id 4 ; sequence CbirOr106NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278571 279254 . + . KQ414889.1 exonerate:protein2genome:local exon 278571 279254 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278571 279254 132 + . alignment_id 4 ; Query CbirOr106NTE ; Align 278571 2 147 ; Align 278721 51 159 ; Align 278889 104 108 ; Align 279000 140 84 ; Align 279084 169 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr106NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 5 -> 225 Target range: 208218 -> 208881 6 : ThrGluLeuAsnArgIleAsnLeuThrLeuLeuGlyLeuTrpProGluAsnAsnGluT : 25 ..!...|||||| ! !..|||! !:!!:!!|||! !||||||..!::!! !!: ValArgLeuAsnValTrpThrLeuLysIleIleGlySerTrpProArgSerIleAspA 208219 : GTTCGTCTGAACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATC : 208276 26 : hrLysGlnLysLysLeuMetSerAspIleArgValIleLeuIlePheAsnIleIlePh : 44 !... ! !:!! !! ..! !!|||! !:!!! !:!!:!! !:!! !:!:.! rgSerTrpLeuGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLe 208277 : GTTCCTGGTTAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCT : 208333 45 : eTrpSerCysIleIleProThrLeuHisSerLeuLeuLysIleTyrAspAspIleMet : 63 ! ! ! ! !:!:||||||||| ! ! ! !:!! :!! !!!:|||.!! uGlyPheIleValIleProThrGlyMetPheAlaIleLeuValValGluAspPheTyr 208334 : CGGTTTCATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTAC : 208390 64 : SerValIleAspAsnLeuGlnTyrThrLeuProPheLeuIleAlaValIleLysLeuP : 83 ..! !:!! ! ! !! !... ! ! ! !|||:!!!!:||| !!! |||! ! AspGlnLeuLysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrV 208391 : GACCAATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACG : 208450 84 : heIleIleTrpGlnLysLysTyrGluValLeuProLeuLeuAsnMetIleLysAspAs : 102 ! |||!!: ::::!! !!!::!!! ! !! !:!!.!. :!!:!!! !|| alIleMetThrValArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAs 208451 : TGATCATGACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGA : 208507 103 : pTrpLeuArgProLysThrSerLysGluArgAsnValMetLeuLysGlnAlaArgIle : 121 |||| !!.! !:!! !..!:!!!!:|||!!.:!!|||||| ! .!.|||!!!.!! pTrpArgAsnValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPhe 208508 : TTGGAGAAACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTC : 208564 122 : AlaArg<->IlePheThrIlePheGlyPheLeuLeuIleGlnIleSerAlaIleIleV : 140 |||||| :!:.!!..!|||! !||| !!!!:!! ! ! ... AlaArgLysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrT 208565 : GCCAGGAAACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctatt : 208624 141 : alLeuPheLeuProLeuPheGlyIleSerMetArgTyrThrThrAsnArgThrAspPr : 159 :!! !||||||||| ! !! !!.!:!: ! ! ! !..!!.! ! yrIleAlaLeuProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTy 208625 : acaTCGCTTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTA : 208681 160 : oGlyArgMetLeuProLeuGlnThrTyrTyrLeuTyrAsnValAsnSerSerProLeu : 178 ! !!|||:!!:!! !! ! !! ! !:!:!! :!!|||...! !||||||:!! rArgArgLeuValTyrProValProLysPheIleLeuAspValArgTyrSerProVal 208682 : CAGAAGGCTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTG : 208738 179 : TyrGluIleThrPhePheLeuGlnSerPheSerValMetAlaGlySerThrMetTyrS : 198 !!|||||| !!:! :!!|||! !!!.|||! !.!.!.!!.! !!.!!!: AsnGluIlePheTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrV 208739 : AATGAGATTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGG : 208798 199 : erGlyThrAspThrPheMetSerValIleValPheHisValCysGlyGlnLeuGluAs : 217 !|||.!! ! !!!. :!!:!!:!!!.!.!.|||!.!||||||||||||:!!! alGlyAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIl 208799 : TTGGGGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGAT : 208855 218 : nLeuLysThrArgIleArgThrLeu : 225 !|||! !:!! !!!!:..!! !||| eLeuMetSerTrpMetGluLysLeu 208856 : TTTGATGTCCTGGATGGAGAAGTTG : 208881 vulgar: CbirOr106NTE 5 225 . KQ414889.1 208218 208881 + 125 M 118 354 G 0 3 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208219 208881 125 + . gene_id 5 ; sequence CbirOr106NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208219 208881 . + . KQ414889.1 exonerate:protein2genome:local exon 208219 208881 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208219 208881 125 + . alignment_id 5 ; Query CbirOr106NTE ; Align 208219 6 354 ; Align 208576 124 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr106NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 2 -> 222 Target range: 262846 -> 263509 3 : GluTrpAlaThrGluLeuAsnArgIleAsnLeuThrLeuLeuGlyLeuTrpProGluA : 22 !!:!::::! !:!!:!!|||||| |||! !! !:!!||| !|||||| !: AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 23 : snAsnGluThrLysGlnLysLysLeuMetSerAspIleArgValIleLeuIlePheAs : 41 :! !..!! !..!::!! !:!!! !!!:! ! .!!! !:!!|||:!!:!!! ! ! erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 42 : nIleIlePheTrpSerCysIleIleProThrLeuHisSerLeuLeuLysIleTyrAsp : 60 ! !:!!.!. ||| !:!!||||||:!!:!!! ! !:!!:!! ! ! !!!: rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 61 : AspIleMetSerValIleAspAsnLeuGlnTyrThrLeuProPheLeuIleAlaValI : 80 :!!.!! ! ! !:!:.!. !||| ! !! !!::!!!:!!!.!:!!| AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 81 : leLysLeuPheIleIleTrpGlnLysLysTyrGluValLeuProLeuLeuAsnMetIl : 99 ||!!.! ! ! :!:! !! ! !.. ! !!::!!! ! !! !:!!.!. :! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 100 : eLysAspAspTrpLeuArgProLysThrSerLysGluArgAsnValMetLeuLysGln : 118 ::!!!!:||||||! !! ! !! ! !! !:!!!!:!:!..!:!!|||||||||.!. lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 119 : AlaArgIleAlaArgIlePheThrIlePheGlyPheLeuLeuIleGlnIleSerAlaI : 138 |||!:! !!.!||| ! ! .!! !! ! !! :!!!!!!!:|||! ||| !! AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 139 : leIleValLeuPheLeuProLeuPheGlyIleSerMetArgTyrThrThrAsnArgTh : 157 !: ! !! !.!.:!! !! !||| !! !..!:!!! ! ! ! !|||..!|| etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 158 : rAspProGlyArgMetLeuProLeuGlnThrTyr<->TyrLeuTyrAsnValAsnSer : 175 | ! !||||||||||||! !! !..!||| ! :!! ! |||:!!!!! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 176 : SerProLeuTyrGluIleThrPhePheLeuGlnSerPheSerValMetAlaGlySerT : 195 !:!||| ! !!|||||| !.!! ! !|||! !.!.|||! !.!. !! !!!!. AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 196 : hrMetTyrSerGlyThrAspThrPheMetSerValIleValPheHisValCysGlyGl : 214 !!! ! !|||.!! ! !.!.! :!!|||.!!!.! !|||!.!|||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 215 : nLeuGluAsnLeuLysThrArgIle : 222 ||||.!. |||! !:!! !!||| nLeuAsnValLeuMetSerTrpIle 263484 : GTTGAACGTGTTGATGTCCTGGATC : 263509 vulgar: CbirOr106NTE 2 222 . KQ414889.1 262846 263509 + 118 M 166 498 G 0 3 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 263509 118 + . gene_id 6 ; sequence CbirOr106NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262847 263509 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263509 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262847 263509 118 + . alignment_id 6 ; Query CbirOr106NTE ; Align 262847 3 498 ; Align 263348 169 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr106NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 1 -> 225 Target range: 284517 -> 286204 2 : TyrGluTrpAlaThrGluLeuAsnArgIleAsnLeuThrLeuLeuGlyLeuTrpProG : 21 !:: !!::::!..!:!!:!!|||||| !|||! !! !:!!|||:!!|||||| TrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProL 284518 : TGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTC : 284575 22 : luAsnAsnGluThrLysGlnLysLysLeuMetSerAspIleArgValIleLeuIlePh : 40 !:! ! ..!! !:!! !!!:|||..!:!: !:!! |||||| euSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSe 284576 : TCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAG : 284632 41 : eAsnIleIlePheTrpSerCysIleIlePro<->ThrLeuHisSerLeuLeuLysIle : 58 ! !.!!:!:.!. ! ! ! !:!::!!||| .!!||| !!!!:!!||| ! ! ! rCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLys 284633 : TTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAA : 284689 59 : TyrAspAspIleMetSerValIleAspAsnLeuGlnTyrThrLeuProPheLeuIleA : 78 !! !|||:!! !!! !||| ! ! :!! ! ! ! !! !:!!!!:| ThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetA 284690 : ACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGG : 284749 79 : laValIleLysLeuPheIleIleTrpGlnLysLysTyrGluValLeuProLeuLeuAs : 97 ||!.!||||||! !!:!|||:!! ..!::: !:!!:!! !! !! !:!!!! laAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLy 284750 : CAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAA : 284806 98 : nMetIleLysAspAsp{Tr} >>>> Target Intron 1 >>>> {p}LeuArg : 105 . |||:::! |||{||} 1012 bp {|}||| ! sAspIleArgAlaAsp{Tr}++ +-{p}LeuSer 284807 : GGACATTCGTGCGGAC{TG}gt.........................ac{G}CTTTCG : 285842 106 : ProLysThrSerLysGluArgAsnValMetLeuLysGlnAlaArgIleAlaArgIleP : 125 ! !!.. ...:::||||||...:::||| ! ! ...|||||||||!.!||| !! HisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerL 285843 : CATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTT : 285902 126 : heThrIlePhe<->GlyPheLeuLeuIleGlnIleSerAlaIleIleValLeuPheLe : 143 !..!!|||||| !.! !!!!:!! !... !.!! !.!! !..! ! ! :! euAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMe 285903 : TGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGAT : 285959 144 : uProLeuPheGlyIleSerMetArgTyrThrThrAsnArgThrAspProGlyArgMet : 162 !||||||! ! !:!! !!! !..! !! ! !|||..!|||! !..!!:! ! tProLeuCysThrValArgThrGluIleIleAspAsnGluThrValArgSerGlnAla 285960 : GCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCG : 286016 163 : LeuProLeuGlnThrTyrTyrLeuTyrAsnValAsnSerSerProLeuTyrGluIleT : 182 !!!|||:!! ! ! !||| !:!! !..!!!!||||||! !!:!||||||. PheProIleTyrArg---GlyLeuLeuAspProArgThrSerProSerPheGluIleV 286017 : TTCCCGATCTATCGC---GGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCG : 286073 183 : hrPhePheLeuGlnSerPheSerValMetAlaGlySerThrMetTyrSerGlyThrAs : 201 .! |||:!!|||!!!!!.:!!!.!.!.!.! !! !:!!:!: ! !|||.!! alGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCy 286074 : TGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTG : 286130 202 : pThrPheMetSerValIleValPheHisValCysGlyGlnLeuGluAsnLeuLysThr : 220 !!:!!!. :!!|||.!!|||.!.|||||||||||||||!!!..!! ||| !||| sSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThr 286131 : CAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACA : 286187 221 : ArgIleArgThrLeu : 225 !:!:!: !! !||| LysLeuAspLysLeu 286188 : AAGCTGGATAAGCTC : 286204 vulgar: CbirOr106NTE 1 225 . KQ414889.1 284517 286204 + 112 M 49 147 G 0 3 M 52 156 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 25 75 G 0 3 M 39 117 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284518 286204 112 + . gene_id 7 ; sequence CbirOr106NTE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284518 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284518 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286204 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286204 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284518 286204 112 + . alignment_id 7 ; Query CbirOr106NTE ; Align 284518 2 147 ; Align 284668 51 156 ; Align 285839 104 75 ; Align 285917 129 117 ; Align 286034 169 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr106NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 2 -> 225 Target range: 194168 -> 194831 3 : GluTrpAlaThrGluLeuAsnArgIleAsnLeuThrLeuLeuGlyLeuTrpProGluA : 22 |||!::|||..!..!:!! !:! !||||||! !:!!|||:!!||||||..!. GluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProArgG 194169 : GAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAAGGG : 194226 23 : snAsnGluThrLysGlnLysLysLeuMetSerAspIleArgValIleLeuIlePheAs : 41 !.:!!... !:::.!.!:! ! !:!!! ! !!:!..! !:!!:!!||| luAspSerLeuArgAspArgValArgLeuPhe---AlaGlnThrGlyValValPheAl 194227 : AGGATTCTCTTCGCGACAGAGTCCGACTGTTC---GCTCAAACTGGCGTGGTCTTCGC : 194280 42 : nIleIlePheTrpSerCysIleIleProThrLeuHisSerLeuLeuLysIleTyrAsp : 60 !:!:!!:! !!:: ! :!! !! !..!:!!:!!!!!! !!!! ! ! !!: aLeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCys---Glu 194281 : TTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGC---GAG : 194334 61 : AspIleMetSerValIleAspAsnLeuGlnTyrThrLeuProPheLeuIleAlaValI : 80 |||:!:! !!!! !!!: ! :!! ! !:!! ! !|||:!:|||:!!| AspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleI 194335 : GATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCA : 194394 81 : leLysLeuPheIleIleTrpGlnLysLysTyrGluValLeuProLeuLeuAsnMetIl : 99 |||||!!!!::! !!: !!!.!:! ! |||:!! ! !! !||| !!! leLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGluMe 194395 : TCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGAT : 194451 100 : eLysAspAspTrpLeuArgProLysThrSerLysGluArgAsnValMetLeuLysGln : 118 ::!! .!.!:: ! ! !:!! !..!:!!!!:|||.!.|||||| !!!. tGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsnCys 194452 : GGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGC : 194508 119 : AlaArgIleAlaArgIlePheThrIlePheGlyPheLeuLeuIleGlnIleSerAlaI : 138 |||!:!|||!.!|||.!!||||||! !.!. !:!||| !:!!... !.!!!.! AlaLysIleGlyArgPhePheThrThrLeu---TyrLeuGlyLeuSerTyrGlyGlyA 194509 : GCGAAAATCGGCCGATTTTTTACTACCCTG---TACTTGGGACTTTCTTACGGTGGCG : 194565 139 : leIleValLeuPheLeuProLeuPheGlyIleSerMetArgTyrThrThrAsnArgTh : 157 !:!: !! ! !:!! !||| ! !!!:||| !||| !..!! !.!. !!. laLeuProTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGluAspAs 194566 : CTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAA : 194622 158 : rAspProGlyArgMetLeuPro<->LeuGlnThrTyrTyrLeuTyrAsnValAsnSer : 175 !..! !! !! ! |||||| |||...!.!||| !!!!!:! :!!.!...! nSerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAsp 194623 : CAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGAC : 194679 176 : SerProLeuTyrGluIleThrPhePheLeuGlnSerPheSerValMetAlaGlySerT : 195 ||||||:!!||||||||||||||| !!! !|||! !.!.! ! !! ! !! !: SerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuS 194680 : TCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGT : 194739 196 : hrMetTyrSerGlyThrAspThrPheMetSerValIleValPheHisValCysGlyGl : 214 !!! ! !!!!!|||! ! !!!:!!!.:!::!!..!|||:!!.!.||| !|||||| erThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGlyLe 194740 : CGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTT : 194796 215 : nLeuGluAsnLeuLysThrArgIleArgThrLeu : 225 !!!!||| !!..! !|||!!:..!|||:!! uPheGluValThrSerArgArgMetGluThrIle 194797 : GTTCGAAGTGACCAGCAGAAGGATGGAGACTATT : 194831 vulgar: CbirOr106NTE 2 225 . KQ414889.1 194168 194831 + 110 M 30 90 G 1 0 M 25 75 G 1 0 M 69 207 G 1 0 M 35 105 G 0 3 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194169 194831 110 + . gene_id 8 ; sequence CbirOr106NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194169 194831 . + . KQ414889.1 exonerate:protein2genome:local exon 194169 194831 . + . insertions 3 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 194169 194831 110 + . alignment_id 8 ; Query CbirOr106NTE ; Align 194169 3 90 ; Align 194259 34 75 ; Align 194334 60 207 ; Align 194541 130 105 ; Align 194649 165 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr109PNI Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 0 -> 217 Target range: 278570 -> 279233 1 : TyrGluTrpAlaIleGluLeuAsnArgLeuSerLeuThrPheLeuGlyIleTrpProG : 20 !:: !!::::!:!!:!!:!!||||||! !! !|||! ! :!!|||:!!|||||| TrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProL 278571 : TGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTC : 278628 21 : luAsn<->HisLysThrLysGlnLysLysLeuMetSerAspIleArgValIleIleIl : 38 !:! ! !|||! !:!!|||:!!! |||! :!!! !!.!:!!|||! euSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSe 278629 : TCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAG : 278685 39 : eLeuAsnLeuIleThrTrpIleCysLeuIleProSerLeuHisSerLeuLeuLysIle : 57 !! ! !|||||| !!:::!!! :!! !:!!||| !!!!:!!||| ! ! ! rCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLys 278686 : TTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAA : 278742 58 : TyrAspAspIleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuMetA : 77 !! !|||:!! !!!! !||| ! ! :!! ! ! ! !! ! !|||| ThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetA 278743 : ACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGG : 278802 78 : laIleIleLysLeuPheIleIleTrpGlnLysGlnTyrAspIleLeuProLeuLeuAs : 96 ||! ||||||! !!:!|||:!! !..!::: ! ! ||| ! !! !:!!|| laThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAs 278803 : CAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAA : 278859 97 : nMetIleLysAspAspTrp<-><-><->LeuArgProLysThrSerGluGluArgSer : 112 | |||::: |||||| ||| ! !::: ...|||||||||... nAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGlu 278860 : TGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagag : 278916 113 : ValMetIleLysGlnAlaArgIleAlaArgIleLeuThrIlePheGlyCys<->PheI : 131 :::|||! ! ...|||||||||!.!||| !|||.!!||||||.!!..! |||! IleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheM 278917 : atcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCA : 278976 132 : leMetLeuIleSerValIlePheAlaLeuValPheProLeuPheGlyIleSerMetAr : 150 !: ! ! !.!!|||.!!!:!.!! !|||.!.|||||||||!.!:!! !!! !.. etTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGl 278977 : TGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGA : 279033 151 : gTyrArgThrAsnArgThrAspProAspLysSerLeuProPheGlnThrCysTyrVal : 169 ! !! ! !|||..!|||! !..!:!!:!!!!!|||.!! ! ! !:!! uIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArg---GlyLeu 279034 : GATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGC---GGCCTC : 279087 170 : TyrAspLysAspLysSerProPhePheGluIleThrTyrIleLeuGlnSerIleSerS : 189 !||| ! !! ||||||! |||||||||..! ! .!!:!!|||!!!:!::!!: LeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaA 279088 : CTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCG : 279147 190 : erMetLeuLeuAlaPheMetTyrSerSerThrAspSerPheLeuSerLeuLeuValPh : 208 !!.!.:!!||| !! :!: ! !.!!.!! !|||!!.:!!:!!:!!!!!|||.! laPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMe 279148 : CGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCAT : 279204 209 : eHisValCysGlyGlnLeuGluAsnLeu : 217 .|||||||||||||||!!!..!! ||| tHisValCysGlyGlnPheArgIleLeu 279205 : GCACGTCTGTGGGCAATTCAGGATACTT : 279233 vulgar: CbirOr109PNI 0 217 . KQ414889.1 278570 279233 + 161 M 21 63 G 0 3 M 81 243 G 0 9 M 27 81 G 0 3 M 37 111 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278571 279233 161 + . gene_id 1 ; sequence CbirOr109PNI ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278571 279233 . + . KQ414889.1 exonerate:protein2genome:local exon 278571 279233 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278571 279233 161 + . alignment_id 1 ; Query CbirOr109PNI ; Align 278571 1 63 ; Align 278637 22 243 ; Align 278889 103 81 ; Align 278973 130 111 ; Align 279084 168 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr109PNI Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 0 -> 214 Target range: 232453 -> 233098 1 : TyrGluTrpAlaIleGluLeuAsnArgLeuSerLeuThrPheLeuGlyIleTrpProG : 20 ||||||!::::!|||:!!:!!||||||! !! !|||||| :!!||| !||||||. TyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProA 232454 : TACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGC : 232511 21 : luAsnHisLysThrLysGlnLysLysLeuMetSerAspIleArgValIleIleIleLe : 39 .. ! :!!|||..!::! :!!! !:!: !! ! !! !:!!! !:!!! !! rgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCy 232512 : GTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTG : 232568 40 : uAsnLeuIleThrTrpIleCysLeuIleProSerLeuHisSerLeuLeuLysIleTyr : 58 !:!!! !:!:! ! !! :!!:!!|||!!!:!!! ! !:!!||| ! !! sHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAsp 232569 : TCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGAC : 232625 59 : AspAspIleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuMetAlaI : 78 ..!:!! !..!! !!!: ! ::!:!! !! ! !! !!!!||||||!.! ThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyG 232626 : ACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTG : 232685 79 : leIleLysLeuPheIleIleTrpGlnLysGlnTyrAspIleLeuProLeuLeuAsnMe : 97 !:!:!!.! !! ! !:!:! ! !||| ! !!||||||||| !! !:!!.!... luLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGl 232686 : AATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACA : 232742 98 : tIleLysAspAspTrpLeuArgProLysThrSerGluGluArgSerValMetIleLys : 116 !:!:|||.!.||||||! !!.! !|||! ! !!! .!.|||..!:!!|||:!:||| nValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLys 232743 : GGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAG : 232799 117 : GlnAlaArgIleAlaArgIleLeuThrIlePheGlyCysPheIleMetLeuIleSerV : 136 .!.|||!:!:!!!.!||| :!!.!! !.!!!.!...||| !|||! !! !.!!| AsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyV 232800 : AACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTG : 232859 137 : alIlePheAlaLeuValPheProLeuPheGlyIleSerMetArgTyrArgThrAsnAr : 155 || !! !! ! !:!! !! !! !.!! !!!!:|||! ! !||| ! !|||.. alGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGl 232860 : TCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGA : 232916 156 : gThrAspProAspLysSerLeuProPheGln<->ThrCysTyrValTyrAspLysAsp : 173 !!:! !! !! ! !!||||||! ! ! ! ! :!! |||! uSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArg 232917 : GAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGA : 232973 174 : LysSerProPhePheGluIleThrTyrIleLeuGlnSerIleSerSerMetLeuLeuA : 193 |||||| !||||||! !!:!:!!||||||!!!:!!|||.!!.!.:!!:!! PheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValA 232974 : TTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGA : 233033 194 : laPheMetTyrSerSerThrAspSerPheLeuSerLeuLeuValPheHisValCysGl : 212 !! !:!: ! !.!!.!! !.!!!!. !:!!:!!|||!.!.!.|||!.!||||| snSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGl 233034 : ACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGG : 233090 213 : yGlnLeu : 214 ||||||| yGlnLeu 233091 : ACAGCTG : 233098 vulgar: CbirOr109PNI 0 214 . KQ414889.1 232453 233098 + 148 M 165 495 G 0 3 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232454 233098 148 + . gene_id 2 ; sequence CbirOr109PNI ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232454 233098 . + . KQ414889.1 exonerate:protein2genome:local exon 232454 233098 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232454 233098 148 + . alignment_id 2 ; Query CbirOr109PNI ; Align 232454 1 495 ; Align 232952 166 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr109PNI Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 4 -> 217 Target range: 208218 -> 208860 5 : IleGluLeuAsnArgLeuSerLeuThrPheLeuGlyIleTrpProGluAsnHisLysT : 24 :!!...|||||| !! !!!!|||! !.!.:!!||| !||||||..!::! ! ValArgLeuAsnValTrpThrLeuLysIleIleGlySerTrpProArgSerIleAspA 208219 : GTTCGTCTGAACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATC : 208276 25 : hrLysGlnLysLysLeuMetSerAspIleArgValIleIleIleLeuAsnLeuIleTh : 43 !... ! !:!! !! ..! !!|||! !:!!! !:!!:!! !:!!! !:!: rgSerTrpLeuGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLe 208277 : GTTCCTGGTTAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCT : 208333 44 : rTrpIleCysLeuIleProSerLeuHisSerLeuLeuLysIleTyrAspAspIleMet : 62 ! ! .!! !:!!||||||!!! ! ! ! !:!! :!! !!!:|||.!! uGlyPheIleValIleProThrGlyMetPheAlaIleLeuValValGluAspPheTyr 208334 : CGGTTTCATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTAC : 208390 63 : SerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuMetAlaIleIleLysLeuP : 82 ..! !:!! ! ! !! !... ! ! ! !!!!:!!||||||.!!! |||! ! AspGlnLeuLysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrV 208391 : GACCAATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACG : 208450 83 : heIleIleTrpGlnLysGlnTyrAspIleLeuProLeuLeuAsnMetIleLysAspAs : 101 ! |||!!: ::::!! !||||||! ! !! !:!!.!. :!!:!!! !|| alIleMetThrValArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAs 208451 : TGATCATGACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGA : 208507 102 : pTrpLeuArgProLysThrSerGluGluArgSerValMetIleLysGlnAlaArgIle : 120 |||| !!.! !:!! !..!|||!!:|||!.!:!!|||:!: ! .!.|||!!!.!! pTrpArgAsnValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPhe 208508 : TTGGAGAAACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTC : 208564 121 : AlaArg<->IleLeuThrIlePheGlyCysPheIleMetLeuIleSerValIlePheA : 139 |||||| :!::!!..!|||! !|||..!|||!!: ! :::...::: AlaArgLysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrT 208565 : GCCAGGAAACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctatt : 208624 140 : laLeuValPheProLeuPheGlyIleSerMetArgTyrArgThrAsnArgThrAspPr : 158 :!!!.!!!.|||||| ! !! !!.!:!: ! ! ..! !..!!.! ! yrIleAlaLeuProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTy 208625 : acaTCGCTTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTA : 208681 159 : oAspLysSerLeuProPheGlnThrCysTyrValTyrAspLysAspLysSerProPhe : 177 ! !:! !:!! ! ! !! !:!:!! ||| ! |||||| ! rArgArgLeuValTyrProValProLysPheIleLeuAspValArgTyrSerProVal 208682 : CAGAAGGCTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTG : 208738 178 : PheGluIleThrTyrIleLeuGlnSerIleSerSerMetLeuLeuAlaPheMetTyrS : 197 !|||||| !|||! :!!|||! !:!:|||.!!.!.:!! ! ! !!!: AsnGluIlePheTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrV 208739 : AATGAGATTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGG : 208798 198 : erSerThrAspSerPheLeuSerLeuLeuValPheHisValCysGlyGlnLeuGluAs : 216 !.!!.!! !.!!!!. !:!!||||||!.!.!.|||!.!||||||||||||:!!! alGlyAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIl 208799 : TTGGGGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGAT : 208855 217 : nLeu : 217 !||| eLeu 208856 : TTTG : 208860 vulgar: CbirOr109PNI 4 217 . KQ414889.1 208218 208860 + 135 M 118 354 G 0 3 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208219 208860 135 + . gene_id 3 ; sequence CbirOr109PNI ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208219 208860 . + . KQ414889.1 exonerate:protein2genome:local exon 208219 208860 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208219 208860 135 + . alignment_id 3 ; Query CbirOr109PNI ; Align 208219 5 354 ; Align 208576 123 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr109PNI Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 0 -> 217 Target range: 284517 -> 286183 1 : TyrGluTrpAlaIleGluLeuAsnArgLeuSerLeuThrPheLeuGlyIleTrpProG : 20 !:: !!::::!:!!:!!:!!||||||! !! !|||! ! :!!|||:!!|||||| TrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProL 284518 : TGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTC : 284575 21 : luAsn<->HisLysThrLysGlnLysLysLeuMetSerAspIleArgValIleIleIl : 38 !:! ! !|||! !:!!|||:!!! |||! :!!! !!.!:!!|||! euSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSe 284576 : TCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAG : 284632 39 : eLeuAsnLeuIleThrTrpIleCysLeuIleProSerLeuHisSerLeuLeuLysIle : 57 !! ! !|||||| !!:::!!! :!! !:!!||| !!!!:!!||| ! ! ! rCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLys 284633 : TTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAA : 284689 58 : TyrAspAspIleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuMetA : 77 !! !|||:!! !!!! !||| ! ! :!! ! ! ! !! !:!!|||| ThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetA 284690 : ACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGG : 284749 78 : laIleIleLysLeuPheIleIleTrpGlnLysGlnTyrAspIleLeuProLeuLeuAs : 96 || ||||||! !!:!|||:!! ..!::: ! ! ||| !! !! !:!!!! laAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLy 284750 : CAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAA : 284806 97 : nMetIleLysAspAsp{Tr} >>>> Target Intron 1 >>>> {p}LeuArg : 104 . |||:::! |||{||} 1012 bp {|}||| ! sAspIleArgAlaAsp{Tr}++ +-{p}LeuSer 284807 : GGACATTCGTGCGGAC{TG}gt.........................ac{G}CTTTCG : 285842 105 : ProLysThrSerGluGluArgSerValMetIleLysGlnAlaArgIleAlaArgIleL : 124 ! !!.. ...|||||||||...:::|||! ! ...|||||||||!.!||| !| HisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerL 285843 : CATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTT : 285902 125 : euThrIlePhe<->GlyCysPheIleMetLeuIleSerValIlePheAlaLeuValPh : 142 ||.!!|||||| !.! !!|||!!: ! ! !.!! !!.!!!:!.!! !|||.! euAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMe 285903 : TGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGAT : 285959 143 : eProLeuPheGlyIleSerMetArgTyrArgThrAsnArgThrAspProAspLysSer : 161 .||||||! ! !:!! !!! !..! !! ! !|||..!|||! !..!:!!:!! tProLeuCysThrValArgThrGluIleIleAspAsnGluThrValArgSerGlnAla 285960 : GCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCG : 286016 162 : LeuProPheGlnThrCysTyrValTyrAspLysAspLysSerProPhePheGluIleT : 181 !!!|||.!! ! ! !:!! !||| ! !! ||||||! |||||||||. PheProIleTyrArg---GlyLeuLeuAspProArgThrSerProSerPheGluIleV 286017 : TTCCCGATCTATCGC---GGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCG : 286073 182 : hrTyrIleLeuGlnSerIleSerSerMetLeuLeuAlaPheMetTyrSerSerThrAs : 200 .! ! .!!:!!|||!!!:!::!!:!!.!.:!!:!! !! :!: ! !.!!.!! alGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCy 286074 : TGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTG : 286130 201 : pSerPheLeuSerLeuLeuValPheHisValCysGlyGlnLeuGluAsnLeu : 217 !|||!!. !:!!:!!!!!|||.!.|||||||||||||||!!!..!! ||| sSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeu 286131 : CAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTT : 286183 vulgar: CbirOr109PNI 0 217 . KQ414889.1 284517 286183 + 134 M 21 63 G 0 3 M 80 240 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 25 75 G 0 3 M 39 117 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284518 286183 134 + . gene_id 4 ; sequence CbirOr109PNI ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284518 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284518 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286183 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286183 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284518 286183 134 + . alignment_id 4 ; Query CbirOr109PNI ; Align 284518 1 63 ; Align 284584 22 240 ; Align 285839 103 75 ; Align 285917 128 117 ; Align 286034 168 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr109PNI Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 1 -> 217 Target range: 266634 -> 267285 2 : GluTrpAlaIleGluLeuAsnArgLeuSerLeuThrPheLeuGlyIleTrpProGluA : 21 !!:!::::!:!::!!|||||||||! !! !|||! ! !:!!||| !|||||| ! AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProL 266635 : GATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGT : 266692 22 : snHisLysThrLysGlnLysLysLeuMetSerAspIleArgValIleIleIleLeuAs : 40 |||...:!! :!!! !!!: !..! ! !:!!|||:!!|||! ! ! euSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266693 : TGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 41 : nLeuIleThrTrpIleCysLeuIleProSerLeuHisSerLeuLeuLysIleTyrAsp : 59 !! ! !! ! !.!! !:!!||||||!!!||| ! !|||:!! ! !!!!: rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 60 : AspIleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuMetAlaIleI : 79 ..!||| !!!! !:!: ! !!! ! ! !! !! !!!!:!:!.! !| SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 80 : leLysLeuPheIleIleTrpGlnLysGlnTyrAspIleLeuProLeuLeuAsnMetIl : 98 ||!!.! ! !! !:!:! !! !:::... ! !!:|||! ! !! !:!!.!. !! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 99 : eLysAspAspTrpLeuArgProLysThrSerGluGluArgSerValMetIleLysGln : 117 ::!! |||||| !! ! !! ! ! !!|||!!:!:!..!||||||:!:|||.!. tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 118 : AlaArgIleAlaArgIleLeuThrIlePheGlyCysPheIleMetLeuIleSerValI : 137 |||||||||!.!||| !:!!.!!|||||| !!... .!!|||! ! !.!!|||: AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 138 : lePheAlaLeuValPheProLeuPheGlyIleSerMetArgTyrArgThrAsnArgTh : 156 !! ! !! !|||.!. !! !||| !!!:..!! ! ! ! !|||..!|| euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 157 : rAspProAspLysSerLeuProPheGlnThrCys<->TyrValTyrAspLysAspLys : 174 | !! ! !||||||! ! !..!! ! ! :!! !! |||! rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 175 : SerProPhePheGluIleThrTyrIleLeuGlnSerIleSerSerMetLeuLeuAlaP : 194 |||||| !||||||..! !:!!! !|||! !:!!|||.!!.!.:!!:!! !! SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 195 : heMetTyrSerSerThrAspSerPheLeuSerLeuLeuValPheHisValCysGlyGl : 213 ! ! !.!!.!! !|||.!! !:!!:!!!!!!.! !|||!.!|||||||| erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 214 : nLeuGluAsnLeu : 217 ||||... ||| nLeuSerValLeu 267272 : GCTGAGCGTGCTG : 267285 vulgar: CbirOr109PNI 1 217 . KQ414889.1 266634 267285 + 131 M 166 498 G 0 3 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266635 267285 131 + . gene_id 5 ; sequence CbirOr109PNI ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266635 267285 . + . KQ414889.1 exonerate:protein2genome:local exon 266635 267285 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266635 267285 131 + . alignment_id 5 ; Query CbirOr109PNI ; Align 266635 2 498 ; Align 267136 168 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr109PNI Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 1 -> 217 Target range: 259769 -> 260420 2 : GluTrpAlaIleGluLeuAsnArgLeuSerLeuThrPheLeuGlyIleTrpProGluA : 21 !!:!::::!:!!:!!!!!||||||! !! !|||! ! :!!||| !|||||| : AspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS 259770 : GACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTT : 259827 22 : snHisLysThrLysGlnLysLysLeuMetSerAspIleArgValIleIleIleLeuAs : 40 :: !...|||! ::! :!! !!!:! !..!:!!! !:!!|||.!!|||! ! ! erSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTy 259828 : CATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTA : 259884 41 : nLeuIleThrTrpIleCysLeuIleProSerLeuHisSerLeuLeuLysIleTyrAsp : 59 ! !! !! ! !:!! !|||||||||!!!:!!! ! !:!!||| ! !!: rSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGlu 259885 : CAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAG : 259941 60 : AspIleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuMetAlaIleI : 79 ..!:!: ! !! !! ! ||| ! ! !! !! !!!!:!:!.! !| SerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysI 259942 : AGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTA : 260001 80 : leLysLeuPheIleIleTrpGlnLysGlnTyrAspIleLeuProLeuLeuAsnMetIl : 98 ||!!.! ! ! :!:! ! !!:! ||||||||| !! !:!!.!. :! leAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisVa 260002 : TTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGT : 260058 99 : eLysAspAspTrpLeuArgProLysThrSerGluGluArgSerValMetIleLysGln : 117 ::!!:!!|||||| !! ! !! !! !..!:!!!!:!:!!:!||||||:!:!:! ! lGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyr 260059 : GGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATAC : 260115 118 : AlaArgIleAlaArgIleLeuThrIlePheGlyCysPheIleMetLeuIleSerValI : 137 |||!:!.!!!.!||| !:!!.!! !! ! !!... !.!!:!!! ! !.!!|||: AlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValL 260116 : GCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTC : 260175 138 : lePheAlaLeuValPheProLeuPheGlyIleSerMetArgTyrArgThrAsnArgTh : 156 !:! ! !! !:!! !! !!:!!!!..!!! !..!:!!! ! ! ! !|||..!|| euCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluTh 260176 : TGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGAC : 260232 157 : rAspProAspLysSerLeuProPheGlnThrCys<->TyrValTyrAspLysAspLys : 174 | !! ! ! !||||||! ! !..!! ! ! :!! :!! !:!! ! rArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAsp 260233 : GAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGAC : 260289 175 : SerProPhePheGluIleThrTyrIleLeuGlnSerIleSerSerMetLeuLeuAlaP : 194 ||||||.!. !||||||..! !:!!:!!|||! !:!!|||.!!.!.:!!:!! !! SerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnS 260290 : AGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATT : 260349 195 : heMetTyrSerSerThrAspSerPheLeuSerLeuLeuValPheHisValCysGlyGl : 213 ! ! !.!!! ! !|||.!! !:!!:!!|||..! !|||!.!|||||||| erSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGl 260350 : CGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCA : 260406 214 : nLeuGluAsnLeu : 217 ||||.!. ||| nLeuAsnValLeu 260407 : GTTGAACGTGCTC : 260420 vulgar: CbirOr109PNI 1 217 . KQ414889.1 259769 260420 + 112 M 166 498 G 0 3 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259770 260420 112 + . gene_id 6 ; sequence CbirOr109PNI ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259770 260420 . + . KQ414889.1 exonerate:protein2genome:local exon 259770 260420 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259770 260420 112 + . alignment_id 6 ; Query CbirOr109PNI ; Align 259770 2 498 ; Align 260271 168 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr109PNI Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 1 -> 217 Target range: 262846 -> 263497 2 : GluTrpAlaIleGluLeuAsnArgLeuSerLeuThrPheLeuGlyIleTrpProGluA : 21 !!:!::::!:!::!!:!!||||||! ! !|||! ! :!!||| !|||||| !: AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 22 : snHisLysThrLysGlnLysLysLeuMetSerAspIleArgValIleIleIleLeuAs : 40 :! !..!! !..!::!! !:!!! !!!:! ! .!!! !:!!|||:!!:!!! ! ! erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 41 : nLeuIleThrTrpIleCysLeuIleProSerLeuHisSerLeuLeuLysIleTyrAsp : 59 !! !:!!! ! ! !:!!|||||||||:!!! ! !:!!:!! ! ! !!!: rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 60 : AspIleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuMetAlaIleI : 79 :!!.!! ! !! !:!:.!. !||| ! !! !! !!!!:!:!.!!!:| AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 80 : leLysLeuPheIleIleTrpGlnLysGlnTyrAspIleLeuProLeuLeuAsnMetIl : 98 ||!!.! ! ! :!:! !! ! ... ! ||||||! ! !! !:!!.!. :! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 99 : eLysAspAspTrpLeuArgProLysThrSerGluGluArgSerValMetIleLysGln : 117 ::!!!!:||||||! !! ! !! ! !! !|||!!:!:! !!:!!|||:!:|||.!. lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 118 : AlaArgIleAlaArgIleLeuThrIlePheGlyCysPheIleMetLeuIleSerValI : 137 |||!:! !!.!||| !:!!.!! !! ! !!....!!.!!|||! !! |||:!!! AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 138 : lePheAlaLeuValPheProLeuPheGlyIleSerMetArgTyrArgThrAsnArgTh : 156 !:! ! !! !:!! !! !! !||| !! !..!:!!! ! ! ! !|||..!|| etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 157 : rAspProAspLysSerLeuProPheGlnThrCys<->TyrValTyrAspLysAspLys : 174 | ! :::! !||||||! !! !..!! ! ! :!! ! |||! ! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 175 : SerProPhePheGluIleThrTyrIleLeuGlnSerIleSerSerMetLeuLeuAlaP : 194 !:!||| !|||||| ! ! ! !|||! !:!:|||.!!.!.:!!:!!.!! AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 195 : heMetTyrSerSerThrAspSerPheLeuSerLeuLeuValPheHisValCysGlyGl : 213 ! ! !.!!.!! !.!!.!. !:!!:!!!!!!.! !|||!.!|||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 214 : nLeuGluAsnLeu : 217 ||||.!. ||| nLeuAsnValLeu 263484 : GTTGAACGTGTTG : 263497 vulgar: CbirOr109PNI 1 217 . KQ414889.1 262846 263497 + 101 M 166 498 G 0 3 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 263497 101 + . gene_id 7 ; sequence CbirOr109PNI ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262847 263497 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263497 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262847 263497 101 + . alignment_id 7 ; Query CbirOr109PNI ; Align 262847 2 498 ; Align 263348 168 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr91NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 0 -> 221 Target range: 232453 -> 233119 1 : PheGluTrpAlaThrGluLeuAsnArgTyrSerLeuGluPheIleGlyLeuTrpProL : 20 !:!|||!::::!! !:!!:!!||||||!::! !||| ! !!:||| !||||||: TyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProA 232454 : TACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGC : 232511 21 : ysMetGluGluThrThrArgGluLysLeuThrAlaAsnAlaArgValPheLeuLeuIl : 39 :::!: !||||||:!!|||! :!!! ! ! ! !! !:!! ||| ! rgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCy 232512 : GTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTG : 232568 40 : eIleMetValThrPheValCysValIleProCysIleHisSerLeuIleArgValTrp : 58 ! ! :!!! !.!! !! :!!:!!|||||||||! ! !:!!:!: !! ! sHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAsp 232569 : TCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGAC : 232625 59 : GlyAspLeuMetSerMetThrAspAsnLeuGlnPheThrLeuProLeuValSerMetV : 78 !..!||| !..!! !! ! ! ::!:!! !! ! !! !!!!:!!! ! ! ThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyG 232626 : ACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTG : 232685 79 : alMetLysLeuValIleMetTrpSerLysLysAlaAlaLeuAlaProIleLeuTyrMe : 97 !:!!!!.! ! ! !:!!! !:!!||| ! !! !:!! ! ! !:!! ! .. luLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGl 232686 : AATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACA : 232742 98 : tIleAlaLysAspTrpLeuArgSerLysSerGluGluGluArgHisAsnMetIleArg : 116 !:!: !:!!||||||! !!.! !|||!.! ! .!.||| !! |||:!:!:! nValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLys 232743 : GGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAG : 232799 117 : CysAlaArgIleProArgMetIleIleIleCysGlyPheValIleMetPheAlaSerP : 136 !|||!:!:!! !||| !||| ! ! !!.! !! !||| !.!!.!! AsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyV 232800 : AACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTG : 232859 137 : heIleLeuLeuPheIleLeuProCysPheGlyIleThrMetArgTyrIleThrAsnVa : 155 !! !! ! ! |||:!! !! ! .!! !!!!:!:!! ! !|||:!: !|||! alGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGl 232860 : TCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGA : 232916 156 : lThrAspProGlyLysProLeuProLeuGlnThrTyr<->TyrPheTyrAspThrAsp : 173 !!:! !! !! ! ! |||||||||! ! ! !||| ! .!. |||||| uSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArg 232917 : GAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGA : 232973 174 : GluSerProTyrPheGluLeuThrPheIleAlaGlnGlyPheThrLeuMetValSerA : 193 |||||| !|||:!!! !|||:!! !||| !!.!!:!! !.!.:!! ! PheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValA 232974 : TTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGA : 233033 194 : laMetGlyTyrThrAlaIleAspSerLeuPheGlyLeuLeuValPheHisValCysGl : 212 ! ! ! !..!!.! ! !.!!||| !!.!:!!|||!.!.!.|||!.!||||| snSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGl 233034 : ACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGG : 233090 213 : yGlnLeuGluAsnValLysGlyArgLeu : 221 |||||||.!. |||! !..!!:!||| yGlnLeuAsnValValMetSerLysLeu 233091 : ACAGCTGAACGTGGTGATGTCGAAATTG : 233119 vulgar: CbirOr91NTE 0 221 . KQ414889.1 232453 233119 + 126 M 167 501 G 0 3 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232454 233119 126 + . gene_id 1 ; sequence CbirOr91NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232454 233119 . + . KQ414889.1 exonerate:protein2genome:local exon 232454 233119 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232454 233119 126 + . alignment_id 1 ; Query CbirOr91NTE ; Align 232454 1 501 ; Align 232958 168 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr91NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 2 -> 213 Target range: 278576 -> 279221 3 : TrpAlaThrGluLeuAsnArgTyrSerLeuGluPheIleGlyLeuTrpPro<->LysM : 21 !::::!..!:!!:!!||||||!::! !|||:!! ||||||:!!|||||| !..: TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 22 : etGluGluThrThrArgGluLysLeuThrAlaAsnAlaArgValPheLeuLeuIleIl : 40 !: ! !|||||| !||||||:!!!:!:!! !.!! !!.!!!.:!! ! !.! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 41 : eMetValThrPheValCysValIleProCysIleHisSerLeuIleArgValTrpGly : 59 !:!!:!! !|||:!!! ||| !..!:!: !!!!:!!:!! ! ! ||| eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 60 : AspLeuMetSerMetThrAspAsnLeuGlnPheThrLeuProLeuValSerMetValM : 79 |||||| !!!! !! ! ! ! :!! ! ! ! !! !..!! ! ..!! AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 80 : etLysLeuValIleMetTrpSerLysLysAlaAlaLeuAlaProIleLeuTyrMetIl : 98 !:|||! ! !|||:!: !|||::: !.! !:!!!.! ! !:!! !! || leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 99 : eAlaLysAspTrp<-><-><->LeuArgSerLysSerGluGluGluArgHisAsnMet : 114 | !! !|||||| ||| !! !:::...||||||||||||... ||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 115 : IleArgCysAlaArgIleProArgMetIleIleIleCysGlyPheValIleMetPheA : 134 ! ! !!||||||||| !||| :!: |||! !.!! !! !.!!|||!:!: ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 135 : laSerPheIleLeu<->LeuPheIleLeuProCysPheGlyIleThrMetArgTyrIl : 152 !!.!! :!!!!! ! !:!::!!|||! |||!.!:!! !! !..! !|| erGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIl 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCAT : 279039 153 : eThrAsnValThrAspProGlyLysProLeuProLeuGlnThrTyrTyrPheTyrAsp : 171 | !|||! !|||! !..!:!! !!!!!|||:!! ! ! !.!! !||| eAspAsnGluThrValArgSerGlnAlaPheProIleTyrArg---GlyLeuLeuAsp 279040 : CGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGC---GGCCTCCTCGAT : 279093 172 : ThrAspGluSerProTyrPheGluLeuThrPheIleAlaGlnGlyPheThrLeuMetV : 191 !! ! ||||||! ||||||:!!..! .!! !||| !!!!..!! !.!.| ProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheV 279094 : CCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCG : 279153 192 : alSerAlaMetGlyTyrThrAlaIleAspSerLeuPheGlyLeuLeuValPheHisVa : 210 ||! ! ! !! ! !..!!.! ! !||||||.!!!.!:!!!!!|||.!.||||| alLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisVa 279154 : TTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGT : 279210 211 : lCysGlyGln : 213 |||||||||| lCysGlyGln 279211 : CTGTGGGCAA : 279221 vulgar: CbirOr91NTE 2 213 . KQ414889.1 278576 279221 + 119 M 17 51 G 0 3 M 83 249 G 0 9 M 36 108 G 0 3 M 28 84 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 279221 119 + . gene_id 2 ; sequence CbirOr91NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278577 279221 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279221 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278577 279221 119 + . alignment_id 2 ; Query CbirOr91NTE ; Align 278577 3 51 ; Align 278631 20 249 ; Align 278889 103 108 ; Align 279000 139 84 ; Align 279084 168 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr91NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 1 -> 214 Target range: 259769 -> 260411 2 : GluTrpAlaThrGluLeuAsnArgTyrSerLeuGluPheIleGlyLeuTrpProLysM : 21 !!:!::::! !:!!!!!||||||!::! !|||:!! |||||| !|||||| AspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS 259770 : GACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTT : 259827 22 : etGluGluThrThrArgGluLysLeuThrAlaAsnAlaArgValPheLeuLeuIleIl : 40 ......||||||||| :!! !! ! !::!!.!! !:!!.!!!!!:!! ! erSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTy 259828 : CATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTA : 259884 41 : eMetValThrPheValCysValIleProCysIleHisSerLeuIleArgValTrpGly : 59 !! ..!! !.!.||| !:!!|||||||||:!!! ! !:!!:!!! !! ! !! ! rSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGlu 259885 : CAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAG : 259941 60 : AspLeuMetSerMetThrAspAsnLeuGlnPheThrLeuProLeuValSerMetValM : 79 ..!||| ! !! ||| ! ||| ! ! !! !! ! !! ! !! SerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysI 259942 : AGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTA : 260001 80 : etLysLeuValIleMetTrpSerLysLysAlaAlaLeuAlaProIleLeuTyrMetIl : 98 !:!!.! !..!! :!!! !! !!:! !! !:!! ! ! !:!! ! :! leAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisVa 260002 : TTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGT : 260058 99 : eAlaLysAspTrpLeuArgSerLysSerGluGluGluArgHisAsnMetIleArgCys : 117 :! !!!.|||||| !! !! !! !!!!|||:!!!!:!:!:!! |||:!:|||! ! lGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyr 260059 : GGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATAC : 260115 118 : AlaArgIleProArgMetIleIleIleCysGlyPheValIleMetPheAlaSerPheI : 137 |||!:!.!! !||| :!! ! !! ! !! !.!.!!:!! !.!.!! !!: AlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValL 260116 : GCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTC : 260175 138 : leLeuLeuPheIleLeuProCysPheGlyIleThrMetArgTyrIleThrAsnValTh : 156 !:! !!!!! !:!::!! !! !!..!!! ! !:!!! ! ! :!: !|||! !|| euCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluTh 260176 : TGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGAC : 260232 157 : rAspProGlyLysProLeuProLeuGlnThrTyr<->TyrPheTyrAspThrAspGlu : 174 | !! ! ! ! !||||||! ! !..!||| ! .!. :!!..!:!!!!: rArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAsp 260233 : GAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGAC : 260289 175 : SerProTyrPheGluLeuThrPheIleAlaGlnGlyPheThrLeuMetValSerAlaM : 194 |||||| !|||:!!..!.!!:!!!.!||| ! !!:!! !.!.:!! ! ! SerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnS 260290 : AGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATT : 260349 195 : etGlyTyrThrAlaIleAspSerLeuPheGlyLeuLeuValPheHisValCysGlyGl : 213 !.!! !..!!.!||| !|||||| !.!:!!|||..! !|||!.!|||||||| erSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGl 260350 : CGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCA : 260406 214 : nLeu : 214 |||| nLeu 260407 : GTTG : 260411 vulgar: CbirOr91NTE 1 214 . KQ414889.1 259769 260411 + 116 M 166 498 G 0 3 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259770 260411 116 + . gene_id 3 ; sequence CbirOr91NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259770 260411 . + . KQ414889.1 exonerate:protein2genome:local exon 259770 260411 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259770 260411 116 + . alignment_id 3 ; Query CbirOr91NTE ; Align 259770 2 498 ; Align 260271 168 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr91NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 2 -> 213 Target range: 284523 -> 286171 3 : TrpAlaThrGluLeuAsnArgTyrSerLeuGluPheIleGlyLeuTrpPro<->LysM : 21 !::::!..!:!!:!!||||||!::! !|||:!! ||||||:!!|||||| !..: TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 22 : etGluGluThrThrArgGluLysLeuThrAlaAsnAlaArgValPheLeuLeuIleIl : 40 !: ! !|||||| !||||||:!!!:!:!! !.!! !!.!!!.:!! ! !.! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 41 : eMetValThrPheValCysValIleProCysIleHisSerLeuIleArgValTrpGly : 59 !:!!:!! !|||:!!! ||| !..!:!: !!!!:!!:!! ! ! ||| eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 60 : AspLeuMetSerMetThrAspAsnLeuGlnPheThrLeuProLeuValSerMetValM : 79 |||||| !!!! !! ! ! ! :!! ! ! ! !! !:!!! ! !.!! AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 80 : etLysLeuValIleMetTrpSerLysLysAlaAlaLeuAlaProIleLeuTyrMetIl : 98 !:|||! ! !|||:!: |||::: !.! !:!!!.!! ! !:!! ! || leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 99 : eAlaLysAsp{Tr} >>>> Target Intron 1 >>>> {p}LeuArgSerLys : 106 | ! !|||{||} 1012 bp {|}||| ! !!.. eArgAlaAsp{Tr}++ +-{p}LeuSerHisSer 284813 : TCGTGCGGAC{TG}gt.........................ac{G}CTTTCGCATAGt : 285848 107 : SerGluGluGluArgHisAsnMetIleArgCysAlaArgIleProArg<->MetIleI : 125 ...||||||||||||... |||! ! !!||||||||| !||| :!! | GlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaI 285849 : caagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGA : 285908 126 : leIleCysGlyPheValIleMetPheAlaSerPheIleLeuLeuPheIleLeuProCy : 144 ||.!!|||!.! ! !!!!: ! !!.!.!!|||.!!! ! ! :!::!!|||! lePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLe 285909 : TCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTT : 285965 145 : sPheGlyIleThrMetArgTyrIleThrAsnValThrAspProGlyLysProLeuPro : 163 ! ! !:!! !! !..! !||| !|||! !|||! !..!:!! !!!!!||| uCysThrValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPhePro 285966 : GTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCG : 286022 164 : LeuGlnThrTyrTyrPheTyrAspThrAspGluSerProTyrPheGluLeuThrPheI : 183 :!! ! ! !.!! !||| !! ! ||||||! ||||||:!!..! . IleTyrArg---GlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnP 286023 : ATCTATCGC---GGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAAT : 286079 184 : leAlaGlnGlyPheThrLeuMetValSerAlaMetGlyTyrThrAlaIleAspSerLe : 202 !! !||| !!!!..!! !.!.|||! ! ! !! ! !..!!.! ! !||||| heMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLe 286080 : TCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTT : 286136 203 : uPheGlyLeuLeuValPheHisValCysGlyGln : 213 | !!.!:!!!!!|||.!.||||||||||||||| uAlaAlaValPheValMetHisValCysGlyGln 286137 : GGCTGCTGTGTTCGTCATGCACGTCTGTGGACAA : 286171 vulgar: CbirOr91NTE 2 213 . KQ414889.1 284523 286171 + 115 M 17 51 G 0 3 M 82 246 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 20 60 G 0 3 M 44 132 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 286171 115 + . gene_id 4 ; sequence CbirOr91NTE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284524 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286171 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286171 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284524 286171 115 + . alignment_id 4 ; Query CbirOr91NTE ; Align 284524 3 51 ; Align 284578 20 246 ; Align 285839 103 60 ; Align 285902 123 132 ; Align 286034 168 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr91NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 1 -> 214 Target range: 266634 -> 267276 2 : GluTrpAlaThrGluLeuAsnArgTyrSerLeuGluPheIleGlyLeuTrpProLysM : 21 !!:!::::! !:!!|||||||||!::! !|||:!! !|||||| !|||||| !: AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProL 266635 : GATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGT : 266692 22 : etGluGluThrThrArgGluLysLeuThrAlaAsnAlaArgValPheLeuLeuIleIl : 40 !!..! |||:!!!:! :!!! !! !!.!::! ! !:!!.!!:!!:!! ! euSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266693 : TGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 41 : eMetValThrPheValCysValIleProCysIleHisSerLeuIleArgValTrpGly : 59 ! !! !.!. !! !||||||||||||:!: ! !|||:!!! !! ! ! ! rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 60 : AspLeuMetSerMetThrAspAsnLeuGlnPheThrLeuProLeuValSerMetValM : 79 ..!:!! !!!! ..! ! !!! ! ! !! !! ! !! ! ! !! SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 80 : etLysLeuValIleMetTrpSerLysLysAlaAlaLeuAlaProIleLeuTyrMetIl : 98 !:!!.! !..!! !:!!! ! !:::!.. !! !:!! ! ! !:!! ! !! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 99 : eAlaLysAspTrpLeuArgSerLysSerGluGluGluArgHisAsnMetIleArgCys : 117 : !! !|||||| !! ! !! !!! !|||!!:!:!!!. |||:!:!:! ! tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 118 : AlaArgIleProArgMetIleIleIleCysGlyPheValIleMetPheAlaSerPheI : 137 ||||||||| !||| ||| !|||! ! !! !.!.!!||| ..!.!! !!: AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 138 : leLeuLeuPheIleLeuProCysPheGlyIleThrMetArgTyrIleThrAsnValTh : 156 !! !! !! !:!::!! !!...||| !!!: !! ! ! :!! !|||! !|| euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 157 : rAspProGlyLysProLeuProLeuGlnThrTyr<->TyrPheTyrAspThrAspGlu : 174 | !! ! ! ! !||||||! ! !..!||| ! .!. !! ..!||| rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 175 : SerProTyrPheGluLeuThrPheIleAlaGlnGlyPheThrLeuMetValSerAlaM : 194 |||||| !|||:!!..!.!!:!!:!!||| ! ! :!! !.!.:!! ! ! SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 195 : etGlyTyrThrAlaIleAspSerLeuPheGlyLeuLeuValPheHisValCysGlyGl : 213 !.!! !..!!.! ! !|||||| !!.!:!!!!!!.! !|||!.!|||||||| erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 214 : nLeu : 214 |||| nLeu 267272 : GCTG : 267276 vulgar: CbirOr91NTE 1 214 . KQ414889.1 266634 267276 + 104 M 166 498 G 0 3 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266635 267276 104 + . gene_id 5 ; sequence CbirOr91NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266635 267276 . + . KQ414889.1 exonerate:protein2genome:local exon 266635 267276 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266635 267276 104 + . alignment_id 5 ; Query CbirOr91NTE ; Align 266635 2 498 ; Align 267136 168 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr104NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 0 -> 225 Target range: 232453 -> 233128 1 : TyrGluTrpAlaIleGluLeuAsnArgLeuSerLeuThrLeuPheGlyValTrpProG : 20 ||||||!::::!|||:!!:!!||||||! !! !||||||! !.!.|||!.!||||||! TyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProA 232454 : TACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGC : 232511 21 : lnAsnAsnGluAspLysGlnLysThrLeuMetSerAspIleArgValIleIleIleLe : 39 :: !!..||| !..!::! !! !:!: !! ! !! !:!!! !:!!! !! rgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCy 232512 : GTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTG : 232568 40 : uAsnIleMetThrTrpThrCysLeuIleProThrLeuHisSerLeuLeuLysIleTyr : 58 !:!! !:!!! ! :!!! :!!:!!||| !:!!! ! !:!!||| ! !! sHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAsp 232569 : TCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGAC : 232625 59 : AspAspIleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuMetAlaL : 78 ..!:!! !..!! !!!: ! ::!:!! !! ! !! !!!!||||||!.! ThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyG 232626 : ACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTG : 232685 79 : euLeuLysLeuSerIleLeuTrpGlnLysLysTyrAspIleLeuProLeuLeuAsnIl : 97 !|||!!.! !!!! !|||! ! !||| ! !!||||||||| !! !:!!.!. luLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGl 232686 : AATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACA : 232742 98 : eIleLysAspAspTrpLeuLysLeuLysThrSerLysGluArgAsnAlaMetIleLys : 116 :!:|||.!.||||||! !!!.:!!|||! ! !! .!.|||:!! !|||:!:||| nValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLys 232743 : GGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAG : 232799 117 : GlnAlaArgIleAlaArgMetLeuThrIleTyrGlyTyrPheMetMetLeuMetSerV : 136 .!.|||!:!:!!!.!||| !:!!.!! ! !!.! ||| |||! !! .!!| AsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyV 232800 : AACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTG : 232859 137 : alThrLeuAlaPheLeuLeuProLeuPheGlyIleSerMetArgTyrArgThrAsnAr : 155 || !! !! ! :!!:!! !! !.!! !!!!:|||! ! !||| ! !|||.. alGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGl 232860 : TCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGA : 232916 156 : gThrAspProAsnAsnLysTyrLeuProLeuGlnThrTyrTyrValTyrAspLysAsp : 174 !!:! !! !!! !! !! ! ! ! ! ! ! :!! |||! uSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArg 232917 : GAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGA : 232973 175 : LysSerProPhePheGluIleThrTyrValLeuGlnCysIleSerLeuSerLeuAlaG : 194 |||||| !||||||! !!:!||||||||||||:!!||| !! !:!!!.!. PheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValA 232974 : TTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGA : 233033 195 : lyGlyIleTyrThrSerThrAspSerPheLeuGlyValLeuValPheHisValCysGl : 213 .!..!:!! !..!.!!.!! !.!!!!. !!.!||||||!.!.!.|||!.!||||| snSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGl 233034 : ACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGG : 233090 214 : yGlnLeuGlnAsnLeuLysGluArgValIleAsnLeu : 225 |||||||.!. :!!! !..!!:!:!! !:!!||| yGlnLeuAsnValValMetSerLysLeuAspAspLeu 233091 : ACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTG : 233128 vulgar: CbirOr104NTE 0 225 . KQ414889.1 232453 233128 + 170 M 225 675 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232454 233128 170 + . gene_id 1 ; sequence CbirOr104NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232454 233128 . + . KQ414889.1 exonerate:protein2genome:local exon 232454 233128 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232454 233128 170 + . alignment_id 1 ; Query CbirOr104NTE ; Align 232454 1 675 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr104NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 288 -> 370 Target range: 291386 -> 292542 289 : SerValThrArgLeuThrPheIleValIleIleSerLeuAsnThrPheThrHisMetC : 308 |||:!! !! !||||||!:!:!!..!:!!:!!!!!! ! !|||||| :!!!!: SerIleGlyIleLeuThrTyrValThrLeuLeuThrSerPheThrPhe---AsnIleL 291387 : TCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTTTCACTTTC---AACATAC : 291441 309 : ysLeuTyrCysIleValGlyGluIleLeuLeuAlaGln >>>> Target Intron : 321 :!!!:!||| !|||||||||:!!||||||!.!||| 913 bp euIlePheCysTyrValGlyGluLeuLeuLeuGlyGln++ 291442 : TGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAGgt.................. : 291482 322 : 1 >>>> CysGluAlaValTyrGluAlaAlaTyrGluTyrAsnTrpTyrThrLeuG : 337 !!...! !:!! .!.|||:!!|||!!: .!.||||||!.!||| ++GlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuP 291483 : .......agGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGC : 292441 338 : luSerLysLysAlaArgAsnLeuLeuMetIleMetIleArgAlaAsnLysProLeuTy : 356 !!!!::!|||||||||:!!:!!:!!:!!:!::!: !! !.!!!!. ! |||:!! ! roArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLy 292442 : CGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAA : 292498 357 : rLeuThrAlaGlyLysLeuPheProMetThrMetAlaMetPhe : 370 |||||||||||||||:!!||| !:!::!!:!! !! ||| sLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPhe 292499 : ACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTT : 292542 vulgar: CbirOr104NTE 288 370 . KQ414889.1 291386 292542 + 139 M 16 48 G 1 0 M 15 45 5 0 2 I 0 909 3 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291387 292542 139 + . gene_id 2 ; sequence CbirOr104NTE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291387 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291387 291479 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292542 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292542 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291387 292542 139 + . alignment_id 2 ; Query CbirOr104NTE ; Align 291387 289 48 ; Align 291435 306 45 ; Align 292393 321 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr104NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 4 -> 218 Target range: 208218 -> 208860 5 : IleGluLeuAsnArgLeuSerLeuThrLeuPheGlyValTrpProGlnAsnAsnGluA : 24 :!!...|||||| !! !!!!|||! !:!!.!!||| !||||||::!::!! !!: ValArgLeuAsnValTrpThrLeuLysIleIleGlySerTrpProArgSerIleAspA 208219 : GTTCGTCTGAACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATC : 208276 25 : spLysGlnLysThrLeuMetSerAspIleArgValIleIleIleLeuAsnIleMetTh : 43 !... ! ! ! !! ..! !!|||! !:!!! !:!!:!! !:!! !:!! rgSerTrpLeuGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLe 208277 : GTTCCTGGTTAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCT : 208333 44 : rTrpThrCysLeuIleProThrLeuHisSerLeuLeuLysIleTyrAspAspIleMet : 62 ! ! ! !:!!||||||||| ! ! ! !:!! :!! !!!:|||.!! uGlyPheIleValIleProThrGlyMetPheAlaIleLeuValValGluAspPheTyr 208334 : CGGTTTCATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTAC : 208390 63 : SerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuMetAlaLeuLeuLysLeuS : 82 ..! !:!! ! ! !! !... ! ! ! !!!!:!!||||||!!! !|||! ! AspGlnLeuLysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrV 208391 : GACCAATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACG : 208450 83 : erIleLeuTrpGlnLysLysTyrAspIleLeuProLeuLeuAsnIleIleLysAspAs : 101 !|||:!! ::::!! !||||||! ! !! !:!!.!. !:!!:!!! !|| alIleMetThrValArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAs 208451 : TGATCATGACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGA : 208507 102 : pTrpLeuLysLeuLysThrSerLysGluArgAsnAlaMetIleLysGlnAlaArgIle : 120 |||| !!!.:!!:!! !..!:!!!!:|||!!. !|||:!: ! .!.|||!!!.!! pTrpArgAsnValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPhe 208508 : TTGGAGAAACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTC : 208564 121 : AlaArg<->MetLeuThrIleTyrGlyTyrPheMetMetLeuMetSerValThrLeuA : 139 |||||| :!!:!!..!|||! !||| !|||||| ! ::: AlaArgLysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrT 208565 : GCCAGGAAACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctatt : 208624 140 : laPheLeuLeuProLeuPheGlyIleSerMetArgTyrArgThrAsnArgThrAspPr : 158 .!! !||||||||| ! !! !!.!:!: ! ! ..! !..!!.! ! yrIleAlaLeuProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTy 208625 : acaTCGCTTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTA : 208681 159 : oAsnAsnLysTyrLeuProLeuGlnThrTyrTyrValTyrAspLysAspLysSerPro : 177 !!..!.. ! !! !|||:!!! ! ! !:!:!! ||| ! |||||| rArgArgLeuValTyrProValProLys---PheIleLeuAspValArgTyrSerPro 208682 : CAGAAGGCTGGTTTATCCTGTTCCTAAG---TTCATTCTGGACGTTCGATACAGTCCT : 208735 178 : PhePheGluIleThrTyrValLeuGlnCysIleSerLeuSerLeuAlaGlyGlyIleT : 197 ! !|||||| !|||..!:!!|||! :!:||| !! !:!!||| !..!||| ValAsnGluIlePheTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleT 208736 : GTGAATGAGATTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCA : 208795 198 : yrThrSerThrAspSerPheLeuGlyValLeuValPheHisValCysGlyGlnLeuGl : 216 ..!.!!.!! !.!!!!. !!.!:!!|||!.!.!.|||!.!|||||||||||||| hrValGlyAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGl 208796 : CGGTTGGGGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCA : 208852 217 : nAsnLeu : 218 |! !||| nIleLeu 208853 : GATTTTG : 208860 vulgar: CbirOr104NTE 4 218 . KQ414889.1 208218 208860 + 136 M 118 354 G 0 3 M 45 135 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208219 208860 136 + . gene_id 3 ; sequence CbirOr104NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208219 208860 . + . KQ414889.1 exonerate:protein2genome:local exon 208219 208860 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208219 208860 136 + . alignment_id 3 ; Query CbirOr104NTE ; Align 208219 5 354 ; Align 208576 123 135 ; Align 208711 169 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr104NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 0 -> 225 Target range: 278570 -> 279254 1 : TyrGluTrpAlaIleGluLeuAsnArgLeuSerLeuThrLeuPheGlyValTrpProG : 20 !:: !!::::!:!!:!!:!!||||||! !! !|||! !! !.!!||||||||||||! TrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProL 278571 : TGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTC : 278628 21 : lnAsnAsnGluAspLysGlnLysThrLeuMetSerAspIleArgValIleIleIleLe : 39 !:! ! ! ! ! ! !!!:|||..!:!: !:!! :!!||| euSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSe 278629 : TCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAG : 278685 40 : uAsnIleMetThrTrpThrCysLeuIlePro<->ThrLeuHisSerLeuLeuLysIle : 57 ! !.!!:!!! ! ! ! !|||:!!||| .!!||| !!!!:!!||| ! ! ! rCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLys 278686 : TTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAA : 278742 58 : TyrAspAspIleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuMetA : 77 !! !|||:!! !!!! !||| ! ! :!! ! ! ! !! ! !|||| ThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetA 278743 : ACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGG : 278802 78 : laLeuLeuLysLeuSerIleLeuTrpGlnLysLysTyrAspIleLeuProLeuLeuAs : 96 || !:!!|||! !! !|||||| !..!::: ! ! ||| ! !! !:!!|| laThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAs 278803 : CAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAA : 278859 97 : nIleIleLysAspAspTrp<-><-><->LeuLysLeuLysThrSerLysGluArgAsn : 112 | !|||::: |||||| |||..!! !::: ...:::||||||... nAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGlu 278860 : TGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagag : 278916 113 : AlaMetIleLysGlnAlaArgIleAlaArgMetLeuThrIleTyrGlyTyr<->PheM : 131 |||! ! ...|||||||||!.!||| |||.!!|||!:!.!! ! |||| IleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheM 278917 : atcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCA : 278976 132 : etMetLeuMetSerValThrLeuAlaPheLeuLeuProLeuPheGlyIleSerMetAr : 150 || ! ! .!!||| !! !.!! !:!!:!!|||||||||!.!:!! !!! !.. etTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGl 278977 : TGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGA : 279033 151 : gTyrArgThrAsnArgThrAspProAsnAsnLysTyrLeuProLeuGlnThrTyrTyr : 169 ! !! ! !|||..!||| !!..::!:!! !!!|||:!! ! ! ! uIleIleAspAsnGluThr---ValArgSerGlnAlaPheProIleTyrArg---Gly 279034 : GATCATCGACAATGAAACG---GTGAGATCTCAAGCGTTCCCGATCTATCGC---GGC : 279084 170 : ValTyrAspLysAspLysSerProPhePheGluIleThrTyrValLeuGlnCysIleS : 189 :!! !||| ! !! ||||||! |||||||||..! ! !!:!!||||||:!:: LeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuA 279085 : CTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGG : 279144 190 : erLeuSerLeuAlaGlyGlyIleTyrThrSerThrAspSerPheLeuGlyValLeuVa : 208 !! !! !:!! ! !..!:!! !..!.!!.!! !|||!!.:!!!.!|||!!!|| laAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheVa 279145 : CCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGT : 279201 209 : lPheHisValCysGlyGlnLeuGlnAsnLeuLysGluArgValIleAsnLeu : 225 |.!.|||||||||||||||!!!::!! ||| ! !!:!:!! !!!.||| lMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeu 279202 : CATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTC : 279254 vulgar: CbirOr104NTE 0 225 . KQ414889.1 278570 279254 + 128 M 49 147 G 0 3 M 53 159 G 0 9 M 27 81 G 0 3 M 27 81 G 1 0 M 10 30 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278571 279254 128 + . gene_id 4 ; sequence CbirOr104NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278571 279254 . + . KQ414889.1 exonerate:protein2genome:local exon 278571 279254 . + . insertions 15 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 278571 279254 128 + . alignment_id 4 ; Query CbirOr104NTE ; Align 278571 1 147 ; Align 278721 50 159 ; Align 278889 103 81 ; Align 278973 130 81 ; Align 279054 158 30 ; Align 279084 169 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr104NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 1 -> 220 Target range: 259769 -> 260426 2 : GluTrpAlaIleGluLeuAsnArgLeuSerLeuThrLeuPheGlyValTrpProGlnA : 21 !!:!::::!:!!:!!!!!||||||! !! !|||! !! !.!.|||!.!||||||! : AspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS 259770 : GACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTT : 259827 22 : snAsnGluAspLysGlnLysThrLeuMetSerAspIleArgValIleIleIleLeuAs : 40 ::::!... ! ::! ! !!!:! !..!:!!! !:!!|||.!!|||! ! ! erSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTy 259828 : CATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTA : 259884 41 : nIleMetThrTrpThrCysLeuIleProThrLeuHisSerLeuLeuLysIleTyrAsp : 59 !! !! ! ! !..! !||||||||| !:!!! ! !:!!||| ! !!: rSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGlu 259885 : CAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAG : 259941 60 : AspIleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuMetAlaLeuL : 79 ..!:!: ! !! !! ! ||| ! ! !! !! !!!!:!:!.!! !: SerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysI 259942 : AGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTA : 260001 80 : euLysLeuSerIleLeuTrpGlnLysLysTyrAspIleLeuProLeuLeuAsnIleIl : 98 !!!!.! !!!!! |||! ! !!:! ||||||||| !! !:!!.!. !:! leAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisVa 260002 : TTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGT : 260058 99 : eLysAspAspTrpLeuLysLeuLysThrSerLysGluArgAsnAlaMetIleLysGln : 117 ::!!:!!|||||| !! :!!! !! !..!|||!!:!:!|||!.!|||:!:!:! ! lGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyr 260059 : GGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATAC : 260115 118 : AlaArgIleAlaArgMetLeuThrIleTyrGlyTyrPheMetMetLeuMetSerValT : 137 |||!:!.!!!.!||| :!!.!! !! ! !! !.!.:!!! ! .!!||| AlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValL 260116 : GCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTC : 260175 138 : hrLeuAlaPheLeuLeuProLeuPheGlyIleSerMetArgTyrArgThrAsnArgTh : 156 !! ! !! !|||:!! !!:!!!!..!!! !..!:!!! ! ! ! !|||..!|| euCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluTh 260176 : TGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGAC : 260232 157 : rAspProAsnAsnLysTyrLeuProLeuGlnThrTyrTyrValTyrAspLysAspLys : 175 | ! !:!! !! ! ! ! ! ! ! ! ! :!! :!! !:!! ! rArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAsp 260233 : GAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGAC : 260289 176 : SerProPhePheGluIleThrTyrValLeuGlnCysIleSerLeuSerLeuAlaGlyG : 195 ||||||.!. !||||||..! !|||:!!|||! !:!!||| !! !:!!!.!..!. SerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnS 260290 : AGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATT : 260349 196 : lyIleTyrThrSerThrAspSerPheLeuGlyValLeuValPheHisValCysGlyGl : 214 .!! ! !..!.!!! ! !|||.!! !!.!||||||..! !|||!.!|||||||| erSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGl 260350 : CGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCA : 260406 215 : nLeuGlnAsnLeuLysGlu : 220 ||||.!. |||! !||| nLeuAsnValLeuMetGlu 260407 : GTTGAACGTGCTCATGGAA : 260426 vulgar: CbirOr104NTE 1 220 . KQ414889.1 259769 260426 + 121 M 219 657 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259770 260426 121 + . gene_id 5 ; sequence CbirOr104NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259770 260426 . + . KQ414889.1 exonerate:protein2genome:local exon 259770 260426 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259770 260426 121 + . alignment_id 5 ; Query CbirOr104NTE ; Align 259770 2 657 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr104NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 1 -> 218 Target range: 266634 -> 267285 2 : GluTrpAlaIleGluLeuAsnArgLeuSerLeuThrLeuPheGlyValTrpProGlnA : 21 !!:!::::!:!::!!|||||||||! !! !|||! !! !.!.|||!.!||||||! ! AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProL 266635 : GATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGT : 266692 22 : snAsnGluAspLysGlnLysThrLeuMetSerAspIleArgValIleIleIleLeuAs : 40 ::: ...:!! !! !!!: !..! ! !:!!|||:!!|||! ! ! euSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266693 : TGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 41 : nIleMetThrTrpThrCysLeuIleProThrLeuHisSerLeuLeuLysIleTyrAsp : 59 ! ! ! ! ! ! !:!!|||||| !||| ! !|||:!! ! !!!!: rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 60 : AspIleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuMetAlaLeuL : 79 ..!||| !!!! !:!: ! !!! ! ! !! !! !!!!:!:!.! !: SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 80 : euLysLeuSerIleLeuTrpGlnLysLysTyrAspIleLeuProLeuLeuAsnIleIl : 98 !!!!.! !!!!! !|||! !! !:::!.. ! !!:|||! ! !! !:!!.!. !!! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 99 : eLysAspAspTrpLeuLysLeuLysThrSerLysGluArgAsnAlaMetIleLysGln : 117 ::!! |||||| !! :!!! ! ! !!:!!!!:!:!.!.!.!|||:!:|||.!. tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 118 : AlaArgIleAlaArgMetLeuThrIleTyrGlyTyrPheMetMetLeuMetSerValT : 137 |||||||||!.!||| :!!.!!|||!:! !! .!.|||! ! .!!||| AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 138 : hrLeuAlaPheLeuLeuProLeuPheGlyIleSerMetArgTyrArgThrAsnArgTh : 156 ! ! !! !:!!:!! !! !||| !!!:..!! ! ! ! !|||..!|| euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 157 : rAspProAsnAsnLysTyrLeuProLeuGlnThrTyrTyrValTyrAspLysAspLys : 175 | ! :!! !! ! ! ! ! ! ! ! :!! !! |||! rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 176 : SerProPhePheGluIleThrTyrValLeuGlnCysIleSerLeuSerLeuAlaGlyG : 195 |||||| !||||||..! !|||! !|||! !:!!||| !! !:!!!.!..!. SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 196 : lyIleTyrThrSerThrAspSerPheLeuGlyValLeuValPheHisValCysGlyGl : 214 .!! ! !..!.!!.!! !|||.!! !!.!|||!!!!.! !|||!.!|||||||| erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 215 : nLeuGlnAsnLeu : 218 ||||... ||| nLeuSerValLeu 267272 : GCTGAGCGTGCTG : 267285 vulgar: CbirOr104NTE 1 218 . KQ414889.1 266634 267285 + 110 M 217 651 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266635 267285 110 + . gene_id 6 ; sequence CbirOr104NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266635 267285 . + . KQ414889.1 exonerate:protein2genome:local exon 266635 267285 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266635 267285 110 + . alignment_id 6 ; Query CbirOr104NTE ; Align 266635 2 651 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr104NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 331 -> 373 Target range: 206275 -> 206401 332 : AsnTrpTyrThrLeuGluSerLysLysAlaArgAsnLeuLeuMetIleMetIleArgA : 351 ||||||||| !||| !!:!!:! ! ||||||::!:!!:!!:!!|||!!: !! !: AsnTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetS 206276 : AATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGT : 206333 352 : laAsnLysProLeuTyrLeuThrAlaGlyLysLeuPheProMetThrMetAlaMetPh : 370 !!||| ! |||:!! ! |||||||||||||||:!!||| !|||:!!:!:|||! || erAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPh 206334 : CTAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTT : 206390 371 : eCysAsnLeu : 373 | !:!!:!! eThrAspVal 206391 : CACCGATGTA : 206401 vulgar: CbirOr104NTE 331 373 . KQ414889.1 206275 206401 + 108 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206276 206401 108 + . gene_id 7 ; sequence CbirOr104NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206276 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206276 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206276 206401 108 + . alignment_id 7 ; Query CbirOr104NTE ; Align 206276 332 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr104NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 319 -> 370 Target range: 277551 -> 277704 320 : GlnCysGluAlaValTyrGluAlaAlaTyrGluTyrAsnTrpTyrThrLeuGluSerL : 339 ||||||:!! !||| !|||!.!!.!||| ! ||||||||| !||| ..!| GlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAspL 277552 : CAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCGACA : 277609 340 : ysLysAlaArgAsnLeuLeuMetIleMetIleArgAlaAsnLysProLeuTyrLeuTh : 358 || ! !! !|||||||||:!:|||!!: !|||:!!!:! ::: :::|| ysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIleTh 277610 : AAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaattac : 277666 359 : rAlaGlyLysLeuPheProMetThrMetAlaMetPhe : 370 |||||||||||||... |||:!!:!! !! !||| rAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277667 : cgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277704 vulgar: CbirOr104NTE 319 370 . KQ414889.1 277551 277704 + 106 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277552 277704 106 + . gene_id 8 ; sequence CbirOr104NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277552 277704 . + . KQ414889.1 exonerate:protein2genome:local exon 277552 277704 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277552 277704 106 + . alignment_id 8 ; Query CbirOr104NTE ; Align 277552 320 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr104NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 320 -> 373 Target range: 280276 -> 280435 321 : CysGluAlaValTyrGluAlaAlaTyrGluTyrAsnTrpTyrThrLeuGluSerLysL : 340 ||| ! !||| !! !:!!.!!||| ! !:!!|||||| !||| !.!!|||| CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysL 280277 : TGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGA : 280334 341 : ysAlaArgAsnLeuLeuMetIleMetIleArgAlaAsnLysProLeuTyrLeuThrAl : 359 |||||!:!..!|||:!!:!!|||.!. ! !:!!|||... !!:!! ! |||||||| ysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAl 280335 : AAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGC : 280391 360 : aGlyLysLeuPheProMetThrMetAlaMetPheCysAsnLeu : 373 |||||||:!!.!! !:!::!!:!:::!! ||||||!:!:!! aGlyLysIleIleAspLeuSerLeuSerSerPheCysSerVal 280392 : TGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTG : 280435 vulgar: CbirOr104NTE 320 373 . KQ414889.1 280276 280435 + 106 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280277 280435 106 + . gene_id 9 ; sequence CbirOr104NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280277 280435 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280435 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280277 280435 106 + . alignment_id 9 ; Query CbirOr104NTE ; Align 280277 321 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr104NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 319 -> 377 Target range: 254271 -> 254445 320 : GlnCysGluAlaValTyrGluAlaAlaTyrGluTyrAsnTrpTyrThrLeuGluSerL : 339 |||||| ! !||| !|||!.!!.!||| ! :!!|||||| !||| !..!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 340 : ysLysAlaArgAsnLeuLeuMetIleMetIleArgAlaAsnLysProLeuTyrLeuTh : 358 :!!:! !! !:!!|||:!!:!!|||!!:! !|||:!!||| ! !:!! ! :!!|| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 359 : rAlaGlyLysLeuPheProMetThrMetAlaMetPheCysAsnLeuLeuLysThrSer : 377 ||||||||||:::||| |||:!!:!: !! !||| !!:!!:!! !:!!|||!:! rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 254443 vulgar: CbirOr104NTE 319 377 . KQ414889.1 254271 254445 + 103 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254445 103 + . gene_id 10 ; sequence CbirOr104NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254445 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254445 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254445 103 + . alignment_id 10 ; Query CbirOr104NTE ; Align 254272 320 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr104NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 0 -> 225 Target range: 284517 -> 286204 1 : TyrGluTrpAlaIleGluLeuAsnArgLeuSerLeuThrLeuPheGlyValTrpProG : 20 !:: !!::::!:!!:!!:!!||||||! !! !|||! !! !.!!||||||||||||! TrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProL 284518 : TGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTC : 284575 21 : lnAsnAsnGluAspLysGlnLysThrLeuMetSerAspIleArgValIleIleIleLe : 39 !:! ! ! ! ! ! !!!:|||..!:!: !:!! :!!||| euSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSe 284576 : TCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAG : 284632 40 : uAsnIleMetThrTrpThrCysLeuIlePro<->ThrLeuHisSerLeuLeuLysIle : 57 ! !.!!:!!! ! ! ! !|||:!!||| .!!||| !!!!:!!||| ! ! ! rCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLys 284633 : TTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAA : 284689 58 : TyrAspAspIleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuMetA : 77 !! !|||:!! !!!! !||| ! ! :!! ! ! ! !! !:!!|||| ThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetA 284690 : ACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGG : 284749 78 : laLeuLeuLysLeuSerIleLeuTrpGlnLysLysTyrAspIleLeuProLeuLeuAs : 96 || !:!!|||! !! !|||||| ..!::: ! ! ||| !! !! !:!!!! laAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLy 284750 : CAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAA : 284806 97 : nIleIleLysAspAsp{Tr} >>>> Target Intron 1 >>>> {p}LeuLys : 104 . !|||:::! |||{||} 1012 bp {|}|||..! sAspIleArgAlaAsp{Tr}++ +-{p}LeuSer 284807 : GGACATTCGTGCGGAC{TG}gt.........................ac{G}CTTTCG : 285842 105 : LeuLysThrSerLysGluArgAsnAlaMetIleLysGlnAlaArgIleAlaArgMetL : 124 ! !!.. ...:::||||||... |||! ! ...|||||||||!.!||| | HisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerL 285843 : CATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTT : 285902 125 : euThrIleTyr<->GlyTyrPheMetMetLeuMetSerValThrLeuAlaPheLeuLe : 142 ||.!!|||!:! !.! !|||||| ! ! .!! !! !! !.!! :!!:! euAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMe 285903 : TGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGAT : 285959 143 : uProLeuPheGlyIleSerMetArgTyrArgThrAsnArgThrAspProAsnAsnLys : 161 !||||||! ! !:!! !!! !..! !! ! !|||..!||| !!..::!:!! tProLeuCysThrValArgThrGluIleIleAspAsnGluThr---ValArgSerGln 285960 : GCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACC---GTGAGATCTCAA : 286013 162 : TyrLeuProLeuGlnThrTyrTyrValTyrAspLysAspLysSerProPhePheGluI : 181 !!!|||:!! ! ! !:!! !||| ! !! ||||||! ||||||| AlaPheProIleTyrArg---GlyLeuLeuAspProArgThrSerProSerPheGluI 286014 : GCGTTCCCGATCTATCGC---GGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGA : 286070 182 : leThrTyrValLeuGlnCysIleSerLeuSerLeuAlaGlyGlyIleTyrThrSerTh : 200 ||..! ! !!:!!||||||:!::!! !! !:!! ! !..!:!! !..!.!!.! leValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAl 286071 : TCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGC : 286127 201 : rAspSerPheLeuGlyValLeuValPheHisValCysGlyGlnLeuGlnAsnLeuLys : 219 ! !|||!!. !!.!|||!!!|||.!.|||||||||||||||!!!::!! ||| ! aCysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeuVal 286128 : TTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTG : 286184 220 : GluArgValIleAsnLeu : 225 !!:!:!! !!!.||| ThrLysLeuAspLysLeu 286185 : ACAAAGCTGGATAAGCTC : 286204 vulgar: CbirOr104NTE 0 225 . KQ414889.1 284517 286204 + 102 M 49 147 G 0 3 M 52 156 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 25 75 G 0 3 M 29 87 G 1 0 M 10 30 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284518 286204 102 + . gene_id 11 ; sequence CbirOr104NTE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284518 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284518 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286204 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286204 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 284518 286204 102 + . alignment_id 11 ; Query CbirOr104NTE ; Align 284518 1 147 ; Align 284668 50 156 ; Align 285839 103 75 ; Align 285917 128 87 ; Align 286004 158 30 ; Align 286034 169 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr104NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 320 -> 373 Target range: 301877 -> 302036 321 : CysGluAlaValTyrGluAlaAlaTyrGluTyrAsnTrpTyrThrLeuGluSerLysL : 340 |||... !:!! !..!|||:!!|||||| !:!!||||||!.!||| !:!!|||! CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysA 301878 : TGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGA : 301935 341 : ysAlaArgAsnLeuLeuMetIleMetIleArgAlaAsnLysProLeuTyrLeuThrAl : 359 :!||| !:!!|||:!!:!::!!! :!:! !:!!.!. ! |||! ! ! |||||||| rgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAl 301936 : GAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGC : 301992 360 : aGlyLysLeuPheProMetThrMetAlaMetPheCysAsnLeu : 373 |||||||:!!.!! !:!::!!:!! !! ||| !!::!:!! aGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301993 : AGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: CbirOr104NTE 320 373 . KQ414889.1 301877 302036 + 101 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301878 302036 101 + . gene_id 12 ; sequence CbirOr104NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301878 302036 101 + . alignment_id 12 ; Query CbirOr104NTE ; Align 301878 321 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr102PNI Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 0 -> 224 Target range: 232453 -> 233128 1 : TyrGluTrpAlaIleGluLeuAsnArgLeuSerLeuThrLeuLeuGlyIleTrpProG : 20 ||||||!::::!|||:!!:!!||||||! !! !||||||! !:!!||| !||||||. TyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProA 232454 : TACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGC : 232511 21 : luAsnHisGluThrLysGlnLysLysLeuIleSerAspIleArgValIleIleThrLe : 39 .. ! ||||||..!::! :!!! !:!! !! ! !! !:!!! !:!!|||! rgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCy 232512 : GTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTG : 232568 40 : uAsnLeuIleThrTrpIleCysPheIleProSerLeuHisSerLeuLeuLysIleTyr : 58 !:!!! !:!:! ! !! .!!:!!|||!!!:!!! ! !:!!||| ! !! sHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAsp 232569 : TCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGAC : 232625 59 : AspAspIleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuMetAlaM : 78 ..!:!! !..!! !!!: ! ::!:!! !! ! !! !!!!||||||!.! ThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyG 232626 : ACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTG : 232685 79 : etIleLysLeuPheIleIleTrpGlnLysLysTyrAspIleLeuProLeuLeuAsnMe : 97 :!:!!.! !! ! !:!:! ! !||| ! !!||||||||| !! !:!!.!... luLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGl 232686 : AATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACA : 232742 98 : tIleLysAspAspTrpLeuArgProLysThrSerGluGluArgAsnValMetIleLys : 116 !:!:|||.!.||||||! !!.! !|||! ! !!! .!.|||:!!:!!|||:!:||| nValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLys 232743 : GGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAG : 232799 117 : HisAlaArgIleAlaArgIleLeuThrIleValGlyTyrPheValMetLeuLeuThrL : 136 :!!|||!:!:!!!.!||| :!!.!! !:!!!.! ||| !|||! ! ! !: AsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyV 232800 : AACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTG : 232859 137 : euIlePheGlyLeuValPheProLeuPheGlyPheSerIleArgTyrArgThrAsnAr : 155 !! !! !! ! !:!! !! !! !.!! !!.!.|||! !||| ! !|||.. alGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGl 232860 : TCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGA : 232916 156 : gThrAspProAspLysSerLeuProIleGlnThrTyr<->TyrIleTyrAspLysAsp : 173 !!:! !! !! ! !!|||||| ! ! !||| ! :!: |||! uSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArg 232917 : GAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGA : 232973 174 : LysSerProPhePheGluIleThrTyrIleLeuGlnSerIleSerAlaValLeuLeuA : 193 |||||| !||||||! !!:!:!!||||||!!!:!!|||!.! !!:!!:!! PheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValA 232974 : TTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGA : 233033 194 : laPheMetTyrSerSerProAspSerPheLeuSerLeuLeuValPheHisValCysGl : 212 !! !:!: ! !.!! !! !.!!!!. !:!!:!!|||!.!.!.|||!.!||||| snSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGl 233034 : ACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGG : 233090 213 : yGlnLeuGluAsnLeuLysLysArgValIleAspLeu : 224 |||||||.!. :!!! !..!!:!:!! !|||||| yGlnLeuAsnValValMetSerLysLeuAspAspLeu 233091 : ACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTG : 233128 vulgar: CbirOr102PNI 0 224 . KQ414889.1 232453 233128 + 171 M 167 501 G 0 3 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232454 233128 171 + . gene_id 1 ; sequence CbirOr102PNI ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232454 233128 . + . KQ414889.1 exonerate:protein2genome:local exon 232454 233128 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232454 233128 171 + . alignment_id 1 ; Query CbirOr102PNI ; Align 232454 1 501 ; Align 232958 168 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr102PNI Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 3 -> 217 Target range: 226933 -> 227578 4 : AlaIleGluLeuAsnArgLeuSerLeuThrLeuLeuGlyIleTrpProGluAsnHisG : 23 ::!|||:!!|||||||||! ! !|||! !! !|||||||||||||||..!:::!.!: SerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgL 226934 : AGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCA : 226991 24 : luThrLysGln<->LysLysLeuIleSerAspIleArgValIleIleThrLeuAsnLe : 41 !!!:!...!:! !!:!! !.!!||| :!:! !! !.!!:!! !! ! || ysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLe 226992 : AAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCT : 227048 42 : uIleThrTrpIleCysPheIleProSerLeuHisSerLeuLeuLysIleTyrAspAsp : 60 |!!:!:!!:: ! !! !.!!|||:!! !:!!|||:!!:!: ! ! ! uMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluVal---LysGly 227049 : GATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTG---AAAGGC : 227102 61 : IleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuMetAlaMetIleL : 80 ! !:!|||:!: ! ! :!! ! !! ! !!!! !|||:!!:!::!!| AlaTyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuL 227103 : GCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCA : 227162 81 : ysLeuPheIleIleTrpGlnLysLysTyrAspIleLeuProLeuLeuAsnMetIleLy : 99 ||! !! !!!::!: ! ! :!! !!||||||||| !! !:!!.!. !||||| ysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIleLy 227163 : AGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAA : 227219 100 : sAspAspTrpLeuArgProLysThrSerGluGluArgAsnValMetIleLysHisAla : 118 | |||||| !!.! !!:! ! !|||!!:||||||||||||:!:! !:!!||| sTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyrAla 227220 : ATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCG : 227276 119 : ArgIleAlaArg<->IleLeuThrIleValGlyTyrPheValMetLeuLeuThrLeuI : 137 ! !!.!||| :!::!!|||||| ! !!:!||||||.!. :::. TyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheValP 227277 : TATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtat : 227336 138 : lePheGlyLeuValPheProLeuPheGlyPheSerIleArgTyrArgThrAsnArgTh : 156 ..||| :!!||| ! |||:!! !!.! |||:!! ! ..! !...!.! hePheTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGlyAsnHi 227337 : ttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCA : 227393 157 : rAspProAspLysSerLeuProIleGlnThrTyrTyrIleTyrAspLysAspLysSer : 175 !..! ! !:!!! !! ! ! !! ! !||| !||| ! ! ||| sSerTyrIleGlnMetProPheProPheProLysIleIleAlaAspValArgTyrSer 227394 : CAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGC : 227450 176 : ProPhePheGluIleThrTyrIleLeuGlnSerIleSerAlaValLeuLeuAlaPheM : 195 |||||| !|||||| !!:! :!!|||! !:!!!!!!.!:!!:!!||| ! !: ProPheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuHisGlyV 227451 : CCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTG : 227510 196 : etTyrSerSerProAspSerPheLeuSerLeuLeuValPheHisValCysGlyGlnLe : 214 !: |||:!! !! !|||.!. !:!!||||||!.! !!|||!.!|||||||||:! alThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMe 227511 : TCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGAT : 227567 215 : uGluAsnLeu : 217 !||| ||| tGluValLeu 227568 : GGAGGTGTTG : 227578 vulgar: CbirOr102PNI 3 217 . KQ414889.1 226933 227578 + 157 M 23 69 G 0 3 M 31 93 G 1 0 M 64 192 G 0 3 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226934 227578 157 + . gene_id 2 ; sequence CbirOr102PNI ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226934 227578 . + . KQ414889.1 exonerate:protein2genome:local exon 226934 227578 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226934 227578 157 + . alignment_id 2 ; Query CbirOr102PNI ; Align 226934 4 69 ; Align 227006 27 93 ; Align 227099 59 192 ; Align 227294 123 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr102PNI Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 0 -> 217 Target range: 278570 -> 279233 1 : TyrGluTrpAlaIleGluLeuAsnArgLeuSerLeuThrLeuLeuGlyIleTrpProG : 20 !:: !!::::!:!!:!!:!!||||||! !! !|||! !! !:!!|||:!!|||||| TrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProL 278571 : TGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTC : 278628 21 : luAsn<->HisGluThrLysGlnLysLysLeuIleSerAspIleArgValIleIleTh : 38 !:! !! !|||! !:!!|||:!!! !|||! :!!! !!.!:!!|||!: euSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSe 278629 : TCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAG : 278685 39 : rLeuAsnLeuIleThrTrpIleCysPheIleProSerLeuHisSerLeuLeuLysIle : 57 !! ! !|||||| !!:::!!! ! !:!!||| !!!!:!!||| ! ! ! rCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLys 278686 : TTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAA : 278742 58 : TyrAspAspIleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuMetA : 77 !! !|||:!! !!!! !||| ! ! :!! ! ! ! !! ! !|||| ThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetA 278743 : ACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGG : 278802 78 : laMetIleLysLeuPheIleIleTrpGlnLysLysTyrAspIleLeuProLeuLeuAs : 96 ||! !||||||! !!:!|||:!! !..!::: ! ! ||| ! !! !:!!|| laThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAs 278803 : CAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAA : 278859 97 : nMetIleLysAspAspTrp<-><-><->LeuArgProLysThrSerGluGluArgAsn : 112 | |||::: |||||| ||| ! !::: ...|||||||||... nAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGlu 278860 : TGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagag : 278916 113 : ValMetIleLysHisAlaArgIleAlaArgIleLeuThrIleValGlyTyr<->PheV : 131 :::|||! ! !|||||||||!.!||| !|||.!!||| !!.!! ! |||: IleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheM 278917 : atcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCA : 278976 132 : alMetLeuLeuThrLeuIlePheGlyLeuValPheProLeuPheGlyPheSerIleAr : 150 !! ! ! ! !:!!.!!!:! ! !|||.!.|||||||||!.! ! !!! .. etTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGl 278977 : TGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGA : 279033 151 : gTyrArgThrAsnArgThrAspProAspLysSerLeuProIleGlnThrTyrTyrIle : 169 ! !! ! !|||..!|||! !..!:!!:!!!!!|||||| ! ! !:!! uIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArg---GlyLeu 279034 : GATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGC---GGCCTC : 279087 170 : TyrAspLysAspLysSerProPhePheGluIleThrTyrIleLeuGlnSerIleSerA : 189 !||| ! !! ||||||! |||||||||..! ! .!!:!!|||!!!:!::!!| LeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaA 279088 : CTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCG : 279147 190 : laValLeuLeuAlaPheMetTyrSerSerProAspSerPheLeuSerLeuLeuValPh : 208 || !!:!!||| !! :!: ! !.!! !! !|||!!.:!!:!!:!!!!!|||.! laPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMe 279148 : CGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCAT : 279204 209 : eHisValCysGlyGlnLeuGluAsnLeu : 217 .|||||||||||||||!!!..!! ||| tHisValCysGlyGlnPheArgIleLeu 279205 : GCACGTCTGTGGGCAATTCAGGATACTT : 279233 vulgar: CbirOr102PNI 0 217 . KQ414889.1 278570 279233 + 147 M 21 63 G 0 3 M 81 243 G 0 9 M 27 81 G 0 3 M 37 111 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278571 279233 147 + . gene_id 3 ; sequence CbirOr102PNI ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278571 279233 . + . KQ414889.1 exonerate:protein2genome:local exon 278571 279233 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278571 279233 147 + . alignment_id 3 ; Query CbirOr102PNI ; Align 278571 1 63 ; Align 278637 22 243 ; Align 278889 103 81 ; Align 278973 130 111 ; Align 279084 168 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr102PNI Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 4 -> 217 Target range: 208218 -> 208860 5 : IleGluLeuAsnArgLeuSerLeuThrLeuLeuGlyIleTrpProGluAsnHisGluT : 24 :!!...|||||| !! !!!!|||! !:!!:!!||| !||||||..!::! !!: ValArgLeuAsnValTrpThrLeuLysIleIleGlySerTrpProArgSerIleAspA 208219 : GTTCGTCTGAACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATC : 208276 25 : hrLysGlnLysLysLeuIleSerAspIleArgValIleIleThrLeuAsnLeuIleTh : 43 !... ! !:!! !! !..! !!|||! !:!!! !:!! ! !:!!! !:!: rgSerTrpLeuGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLe 208277 : GTTCCTGGTTAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCT : 208333 44 : rTrpIleCysPheIleProSerLeuHisSerLeuLeuLysIleTyrAspAspIleMet : 62 ! ! .!! ! ! ||||||!!! ! ! ! !:!! :!! !!!:|||.!! uGlyPheIleValIleProThrGlyMetPheAlaIleLeuValValGluAspPheTyr 208334 : CGGTTTCATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTAC : 208390 63 : SerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuMetAlaMetIleLysLeuP : 82 ..! !:!! ! ! !! !... ! ! ! !!!!:!!||||||.!.! |||! ! AspGlnLeuLysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrV 208391 : GACCAATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACG : 208450 83 : heIleIleTrpGlnLysLysTyrAspIleLeuProLeuLeuAsnMetIleLysAspAs : 101 ! |||!!: ::::!! !||||||! ! !! !:!!.!. :!!:!!! !|| alIleMetThrValArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAs 208451 : TGATCATGACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGA : 208507 102 : pTrpLeuArgProLysThrSerGluGluArgAsnValMetIleLysHisAlaArgIle : 120 |||| !!.! !:!! !..!|||!!:|||!!.:!!|||:!: ! :!!|||!!!.!! pTrpArgAsnValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPhe 208508 : TTGGAGAAACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTC : 208564 121 : AlaArg<->IleLeuThrIleValGlyTyrPheValMetLeuLeuThrLeuIlePheG : 139 |||||| :!::!!..!||| !||| !|||:!! ! ...:::...::: AlaArgLysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrT 208565 : GCCAGGAAACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctatt : 208624 140 : lyLeuValPheProLeuPheGlyPheSerIleArgTyrArgThrAsnArgThrAspPr : 158 :!!!.!!!.|||||| ! !! !!.!:!! ! ! ..! !..!!.! ! yrIleAlaLeuProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTy 208625 : acaTCGCTTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTA : 208681 159 : oAspLysSerLeuProIleGlnThrTyrTyrIleTyrAspLysAspLysSerProPhe : 177 ! !:! !:!! ! ! !! ! !:!||| ||| ! |||||| ! rArgArgLeuValTyrProValProLysPheIleLeuAspValArgTyrSerProVal 208682 : CAGAAGGCTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTG : 208738 178 : PheGluIleThrTyrIleLeuGlnSerIleSerAlaValLeuLeuAlaPheMetTyrS : 197 !|||||| !|||! :!!|||! !:!:|||!.! !!:!! ! ! !!!: AsnGluIlePheTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrV 208739 : AATGAGATTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGG : 208798 198 : erSerProAspSerPheLeuSerLeuLeuValPheHisValCysGlyGlnLeuGluAs : 216 !.!! !! !.!!!!. !:!!||||||!.!.!.|||!.!||||||||||||:!!! alGlyAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIl 208799 : TTGGGGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGAT : 208855 217 : nLeu : 217 !||| eLeu 208856 : TTTG : 208860 vulgar: CbirOr102PNI 4 217 . KQ414889.1 208218 208860 + 136 M 118 354 G 0 3 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208219 208860 136 + . gene_id 4 ; sequence CbirOr102PNI ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208219 208860 . + . KQ414889.1 exonerate:protein2genome:local exon 208219 208860 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208219 208860 136 + . alignment_id 4 ; Query CbirOr102PNI ; Align 208219 5 354 ; Align 208576 123 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr102PNI Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 0 -> 217 Target range: 284517 -> 286183 1 : TyrGluTrpAlaIleGluLeuAsnArgLeuSerLeuThrLeuLeuGlyIleTrpProG : 20 !:: !!::::!:!!:!!:!!||||||! !! !|||! !! !:!!|||:!!|||||| TrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProL 284518 : TGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTC : 284575 21 : luAsn<->HisGluThrLysGlnLysLysLeuIleSerAspIleArgValIleIleTh : 38 !:! !! !|||! !:!!|||:!!! !|||! :!!! !!.!:!!|||!: euSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSe 284576 : TCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAG : 284632 39 : rLeuAsnLeuIleThrTrpIleCysPheIleProSerLeuHisSerLeuLeuLysIle : 57 !! ! !|||||| !!:::!!! ! !:!!||| !!!!:!!||| ! ! ! rCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLys 284633 : TTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAA : 284689 58 : TyrAspAspIleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuMetA : 77 !! !|||:!! !!!! !||| ! ! :!! ! ! ! !! !:!!|||| ThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetA 284690 : ACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGG : 284749 78 : laMetIleLysLeuPheIleIleTrpGlnLysLysTyrAspIleLeuProLeuLeuAs : 96 || !||||||! !!:!|||:!! ..!::: ! ! ||| !! !! !:!!!! laAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLy 284750 : CAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAA : 284806 97 : nMetIleLysAspAsp{Tr} >>>> Target Intron 1 >>>> {p}LeuArg : 104 . |||:::! |||{||} 1012 bp {|}||| ! sAspIleArgAlaAsp{Tr}++ +-{p}LeuSer 284807 : GGACATTCGTGCGGAC{TG}gt.........................ac{G}CTTTCG : 285842 105 : ProLysThrSerGluGluArgAsnValMetIleLysHisAlaArgIleAlaArgIleL : 124 ! !!.. ...|||||||||...:::|||! ! !|||||||||!.!||| !| HisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerL 285843 : CATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTT : 285902 125 : euThrIle<->ValGlyTyrPheValMetLeuLeuThrLeuIlePheGlyLeuValPh : 142 ||.!!||| !!.! !|||:!! ! ! ! !!!!.!!!:! ! !|||.! euAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMe 285903 : TGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGAT : 285959 143 : eProLeuPheGlyPheSerIleArgTyrArgThrAsnArgThrAspProAspLysSer : 161 .||||||! ! ! ! !!! ..! !! ! !|||..!|||! !..!:!!:!! tProLeuCysThrValArgThrGluIleIleAspAsnGluThrValArgSerGlnAla 285960 : GCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCG : 286016 162 : LeuProIleGlnThrTyrTyrIleTyrAspLysAspLysSerProPhePheGluIleT : 181 !!!|||||| ! ! !:!! !||| ! !! ||||||! |||||||||. PheProIleTyrArg---GlyLeuLeuAspProArgThrSerProSerPheGluIleV 286017 : TTCCCGATCTATCGC---GGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCG : 286073 182 : hrTyrIleLeuGlnSerIleSerAlaValLeuLeuAlaPheMetTyrSerSerProAs : 200 .! ! .!!:!!|||!!!:!::!!||| !!:!!:!! !! :!: ! !.!! !! alGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCy 286074 : TGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTG : 286130 201 : pSerPheLeuSerLeuLeuValPheHisValCysGlyGlnLeuGluAsnLeu : 217 !|||!!. !:!!:!!!!!|||.!.|||||||||||||||!!!..!! ||| sSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIleLeu 286131 : CAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTT : 286183 vulgar: CbirOr102PNI 0 217 . KQ414889.1 284517 286183 + 126 M 21 63 G 0 3 M 80 240 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 24 72 G 0 3 M 40 120 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284518 286183 126 + . gene_id 5 ; sequence CbirOr102PNI ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284518 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284518 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286183 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286183 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 284518 286183 126 + . alignment_id 5 ; Query CbirOr102PNI ; Align 284518 1 63 ; Align 284584 22 240 ; Align 285839 103 72 ; Align 285914 127 120 ; Align 286034 168 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr102PNI Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 1 -> 217 Target range: 266634 -> 267285 2 : GluTrpAlaIleGluLeuAsnArgLeuSerLeuThrLeuLeuGlyIleTrpProGluA : 21 !!:!::::!:!::!!|||||||||! !! !|||! !! !:!!||| !|||||| ! AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProL 266635 : GATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGT : 266692 22 : snHisGluThrLysGlnLysLysLeuIleSerAspIleArgValIleIleThrLeuAs : 40 |||...:!! :!!! !||| !..! ! !:!!|||:!!! !! ! ! euSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266693 : TGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 41 : nLeuIleThrTrpIleCysPheIleProSerLeuHisSerLeuLeuLysIleTyrAsp : 59 !! ! !! ! !.!! ! ! ||||||!!!||| ! !|||:!! ! !!!!: rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 60 : AspIleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuMetAlaMetI : 79 ..!||| !!!! !:!: ! !!! ! ! !! !! !!!!:!:!.! | SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 80 : leLysLeuPheIleIleTrpGlnLysLysTyrAspIleLeuProLeuLeuAsnMetIl : 98 ||!!.! ! !! !:!:! !! !:::!.. ! !!:|||! ! !! !:!!.!. !! leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 99 : eLysAspAspTrpLeuArgProLysThrSerGluGluArgAsnValMetIleLysHis : 117 ::!! |||||| !! ! !! ! ! !!|||!!:!:!.!.||||||:!:|||:!! tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 118 : AlaArgIleAlaArgIleLeuThrIleValGlyTyrPheValMetLeuLeuThrLeuI : 137 |||||||||!.!||| !:!!.!!||| !! !! !!|||! !! ! !:!!: AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 138 : lePheGlyLeuValPheProLeuPheGlyPheSerIleArgTyrArgThrAsnArgTh : 156 !! ! !! !|||.!. !! !||| !.!...!! ! ! ! ! !|||..!|| euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 157 : rAspProAspLysSerLeuProIleGlnThrTyr<->TyrIleTyrAspLysAspLys : 174 | !! ! !|||||| ! !..!||| ! !!: !! |||! rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 175 : SerProPhePheGluIleThrTyrIleLeuGlnSerIleSerAlaValLeuLeuAlaP : 194 |||||| !||||||..! !:!!! !|||! !:!!|||!.! !!:!!:!! !! SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 195 : heMetTyrSerSerProAspSerPheLeuSerLeuLeuValPheHisValCysGlyGl : 213 ! ! !.!! !! !|||.!! !:!!:!!!!!!.! !|||!.!|||||||| erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 214 : nLeuGluAsnLeu : 217 ||||... ||| nLeuSerValLeu 267272 : GCTGAGCGTGCTG : 267285 vulgar: CbirOr102PNI 1 217 . KQ414889.1 266634 267285 + 120 M 166 498 G 0 3 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266635 267285 120 + . gene_id 6 ; sequence CbirOr102PNI ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266635 267285 . + . KQ414889.1 exonerate:protein2genome:local exon 266635 267285 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266635 267285 120 + . alignment_id 6 ; Query CbirOr102PNI ; Align 266635 2 498 ; Align 267136 168 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr102PNI Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 1 -> 223 Target range: 259769 -> 260438 2 : GluTrpAlaIleGluLeuAsnArgLeuSerLeuThrLeuLeuGlyIleTrpProGluA : 21 !!:!::::!:!!:!!!!!||||||! !! !|||! !! !:!!||| !|||||| : AspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS 259770 : GACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTT : 259827 22 : snHisGluThrLysGlnLysLysLeuIleSerAspIleArgValIleIleThrLeuAs : 40 :: !...|||! ::! :!! !|||! !..!:!!! !:!!|||.!!! !! ! ! erSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTy 259828 : CATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTA : 259884 41 : nLeuIleThrTrpIleCysPheIleProSerLeuHisSerLeuLeuLysIleTyrAsp : 59 ! !! !! ! !:!! !.!.||||||!!!:!!! ! !:!!||| ! !!: rSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGlu 259885 : CAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAG : 259941 60 : AspIleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuMetAlaMetI : 79 ..!:!: ! !! !! ! ||| ! ! !! !! !!!!:!:!.! | SerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysI 259942 : AGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTA : 260001 80 : leLysLeuPheIleIleTrpGlnLysLysTyrAspIleLeuProLeuLeuAsnMetIl : 98 ||!!.! ! ! :!:! ! !!:! ||||||||| !! !:!!.!. :! leAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisVa 260002 : TTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGT : 260058 99 : eLysAspAspTrpLeuArgProLysThrSerGluGluArgAsnValMetIleLysHis : 117 ::!!:!!|||||| !! ! !! !! !..!:!!!!:!:!|||||||||:!:!:!:!! lGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyr 260059 : GGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATAC : 260115 118 : AlaArgIleAlaArgIleLeuThrIleValGlyTyrPheValMetLeuLeuThrLeuI : 137 |||!:!.!!!.!||| !:!!.!! ! ! !! ! !!:!!! ! ! !:!!: AlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValL 260116 : GCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTC : 260175 138 : lePheGlyLeuValPheProLeuPheGlyPheSerIleArgTyrArgThrAsnArgTh : 156 !:! ! !! !:!! !! !!:!!!!..!! ..!:!:! ! ! ! !|||..!|| euCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluTh 260176 : TGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGAC : 260232 157 : rAspProAspLysSerLeuProIleGlnThrTyr<->TyrIleTyrAspLysAspLys : 174 | !! ! ! !|||||| ! !..!||| ! :!: :!! !:!! ! rArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAsp 260233 : GAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGAC : 260289 175 : SerProPhePheGluIleThrTyrIleLeuGlnSerIleSerAlaValLeuLeuAlaP : 194 ||||||.!. !||||||..! !:!!:!!|||! !:!!|||!.! !!:!!:!! !! SerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnS 260290 : AGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATT : 260349 195 : heMetTyrSerSerProAspSerPheLeuSerLeuLeuValPheHisValCysGlyGl : 213 ! ! !.!! ! !|||.!! !:!!:!!|||..! !|||!.!|||||||| erSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGl 260350 : CGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCA : 260406 214 : nLeuGluAsnLeuLysLysArgValIleAsp : 223 ||||.!. |||! !:!! !!:!!! !!: nLeuAsnValLeuMetGluTrpIleThrGlu 260407 : GTTGAACGTGCTCATGGAATGGATCACGGAG : 260438 vulgar: CbirOr102PNI 1 223 . KQ414889.1 259769 260438 + 116 M 166 498 G 0 3 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259770 260438 116 + . gene_id 7 ; sequence CbirOr102PNI ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259770 260438 . + . KQ414889.1 exonerate:protein2genome:local exon 259770 260438 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259770 260438 116 + . alignment_id 7 ; Query CbirOr102PNI ; Align 259770 2 498 ; Align 260271 168 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr102PNI Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 1 -> 217 Target range: 262846 -> 263497 2 : GluTrpAlaIleGluLeuAsnArgLeuSerLeuThrLeuLeuGlyIleTrpProGluA : 21 !!:!::::!:!::!!:!!||||||! ! !|||! !! !:!!||| !|||||| !: AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 22 : snHisGluThrLysGlnLysLysLeuIleSerAspIleArgValIleIleThrLeuAs : 40 :! !..!! !..!::!! !:!!! !|||! ! .!!! !:!!|||:!!..!! ! ! erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 41 : nLeuIleThrTrpIleCysPheIleProSerLeuHisSerLeuLeuLysIleTyrAsp : 59 !! !:!!! ! ! ! !!|||||||||:!!! ! !:!!:!! ! ! !!!: rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 60 : AspIleMetSerThrIleAspAsnLeuGlnTyrThrLeuProLeuLeuMetAlaMetI : 79 :!!.!! ! !! !:!:.!. !||| ! !! !! !!!!:!:!.!|||| AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 80 : leLysLeuPheIleIleTrpGlnLysLysTyrAspIleLeuProLeuLeuAsnMetIl : 98 ||!!.! ! ! :!:! !! ! !.. ! ||||||! ! !! !:!!.!. :! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 99 : eLysAspAspTrpLeuArgProLysThrSerGluGluArgAsnValMetIleLysHis : 117 ::!!!!:||||||! !! ! !! ! !! !|||!!:!:!..!:!!|||:!:|||:!! lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 118 : AlaArgIleAlaArgIleLeuThrIleValGlyTyrPheValMetLeuLeuThrLeuI : 137 |||!:! !!.!||| !:!!.!! ! ! !! .!! !!|||! ! !!:!:!!! AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 138 : lePheGlyLeuValPheProLeuPheGlyPheSerIleArgTyrArgThrAsnArgTh : 156 !:! ! !! !:!! !! !! !||| ! ..!:!:! ! ! ! !|||..!|| etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 157 : rAspProAspLysSerLeuProIleGlnThrTyr<->TyrIleTyrAspLysAspLys : 174 | ! :::! !|||||| !! !..!||| ! ||| ! |||! ! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 175 : SerProPhePheGluIleThrTyrIleLeuGlnSerIleSerAlaValLeuLeuAlaP : 194 !:!||| !|||||| ! ! ! !|||! !:!:|||!.! !!:!!:!!.!! AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 195 : heMetTyrSerSerProAspSerPheLeuSerLeuLeuValPheHisValCysGlyGl : 213 ! ! !.!! !! !.!!.!. !:!!:!!!!!!.! !|||!.!|||||||| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 214 : nLeuGluAsnLeu : 217 ||||.!. ||| nLeuAsnValLeu 263484 : GTTGAACGTGTTG : 263497 vulgar: CbirOr102PNI 1 217 . KQ414889.1 262846 263497 + 108 M 166 498 G 0 3 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 263497 108 + . gene_id 8 ; sequence CbirOr102PNI ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262847 263497 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263497 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262847 263497 108 + . alignment_id 8 ; Query CbirOr102PNI ; Align 262847 2 498 ; Align 263348 168 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr102PNI Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 276 -> 329 Target range: 277545 -> 277704 277 : PheGlyThrCysGluAlaIleTyrAspAlaAlaTyrGluTyrAsnTrpTyrThrLeuG : 296 ||| !! !|||:!! !:!! !!!:!.!!.!||| ! ||||||||| !||| PheArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuP 277546 : TTCCGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTAC : 277603 297 : luProLysGluThrLysAsnLeuLeuMetIleMetIleArgAlaAsnLysProLeuTy : 315 !|||!!:! ! |||||||||:!:|||!!: !|||:!!!:! ::: roAspLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLy 277604 : CCGACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaa : 277660 316 : rLeuThrAlaGlyLysLeuPheProMetThrMetAlaThrPhe : 329 :::|||||||||||||||... |||:!!:!! !|||||| sIleThrAlaGlyLysLeuIleGlnMetSerValTyrThrPhe 277661 : aattaccgctggaaaattaattcaaatgtCCGTGTACACGTTC : 277704 vulgar: CbirOr102PNI 276 329 . KQ414889.1 277545 277704 + 108 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277546 277704 108 + . gene_id 9 ; sequence CbirOr102PNI ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277546 277704 . + . KQ414889.1 exonerate:protein2genome:local exon 277546 277704 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277546 277704 108 + . alignment_id 9 ; Query CbirOr102PNI ; Align 277546 277 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr102PNI Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 290 -> 332 Target range: 206275 -> 206401 291 : AsnTrpTyrThrLeuGluProLysGluThrLysAsnLeuLeuMetIleMetIleArgA : 310 ||||||||| !||| ! !!:!.!..!!:::::!:!!:!!:!!|||!!: !! !: AsnTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetS 206276 : AATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGT : 206333 311 : laAsnLysProLeuTyrLeuThrAlaGlyLysLeuPheProMetThrMetAlaThrPh : 329 !!||| ! |||:!! ! |||||||||||||||:!!||| !|||:!!:!:|||!:!|| erAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPh 206334 : CTAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTT : 206390 330 : eCysAsnLeu : 332 | !:!!:!! eThrAspVal 206391 : CACCGATGTA : 206401 vulgar: CbirOr102PNI 290 332 . KQ414889.1 206275 206401 + 101 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206276 206401 101 + . gene_id 10 ; sequence CbirOr102PNI ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206276 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206276 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206276 206401 101 + . alignment_id 10 ; Query CbirOr102PNI ; Align 206276 291 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr102PNI Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 279 -> 332 Target range: 301877 -> 302036 280 : CysGluAlaIleTyrAspAlaAlaTyrGluTyrAsnTrpTyrThrLeuGluProLysG : 299 |||... !||| !...|||:!!|||||| !:!!||||||!.!||| ! !!|||. CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysA 301878 : TGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGA : 301935 300 : luThrLysAsnLeuLeuMetIleMetIleArgAlaAsnLysProLeuTyrLeuThrAl : 318 .!.!! ! :!!|||:!!:!::!!! :!:! !:!!.!. ! |||! ! ! |||||||| rgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAl 301936 : GAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGC : 301992 319 : aGlyLysLeuPheProMetThrMetAlaThrPheCysAsnLeu : 332 |||||||:!!.!! !:!::!!:!! !|||||| !!::!:!! aGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301993 : AGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: CbirOr102PNI 279 332 . KQ414889.1 301877 302036 + 100 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301878 302036 100 + . gene_id 11 ; sequence CbirOr102PNI ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301878 302036 100 + . alignment_id 11 ; Query CbirOr102PNI ; Align 301878 280 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr94PNC Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 300 -> 371 Target range: 807323 -> 807536 301 : ValThrValLeuLeuAlaHisThrPheLeuTyrCysGlyAlaGlyGluIleMetThrG : 320 :!!..!..!|||||| !!!. !!:!||||||..! !||||||.!.! !:!: !. MetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluS 807324 : ATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGT : 807381 321 : lnHisCysAspAlaValTyrHisAlaIleTyrAspLeuGluTrpTyrLysLeuGluSe : 339 .!!.. !!!:! !:!! !!.||| !||||||! ! ||||||:::! !.!..! erArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGl 807382 : CGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGG : 807438 340 : rArgLysSerArgAsnLeuIleLeuLeuMetIleArgAlaGlyGluProPheArgIle : 358 !!.! !:!!|||:!!|||:!!|||:!!!!: !|||!.!..!..!|||!:!|||||| yHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIle 807439 : GCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATA : 807495 359 : ThrAlaGlyLysValIleProLeuThrLeuThrThrPhe : 371 |||||||||||| !!:!!|||:!!!.!||| !|||||| ThrAlaGlyLysPheValProMetAsnLeuPheThrPhe 807496 : ACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTC : 807536 vulgar: CbirOr94PNC 300 371 . KQ414940.1 807323 807536 + 143 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807324 807536 143 + . gene_id 1 ; sequence CbirOr94PNC ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807324 807536 . + . KQ414940.1 exonerate:protein2genome:local exon 807324 807536 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807324 807536 143 + . alignment_id 1 ; Query CbirOr94PNC ; Align 807324 301 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr92NTE Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 300 -> 385 Target range: 807323 -> 807578 301 : IleIleIleIlePheAlaHisThrPheLeuTyrCysGlyAlaGlyGluIleMetIleG : 320 !!::!:! !:!:.!. !!!. !!:!||||||..! !||||||.!.! !:!: . MetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluS 807324 : ATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGT : 807381 321 : luHisCysAsnArgValTyrGlnAlaIleTyrAsnLeuGluTrpTyrLysLeuGluAl : 339 .!!.. !.!...!:!! |||||| !|||:!!! ! ||||||:::! !.!.!. erArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGl 807382 : CGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGG : 807438 340 : aArgLysAlaArgAsnLeuValLeuLeuMetIleArgAlaSerGluProPheArgIle : 358 !!.! !||||||:!!|||:!!|||:!!!!: !|||!.!!:!..!|||!:!|||||| yHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIle 807439 : GCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATA : 807495 359 : ThrAlaGlyLysValIleProLeuThrMetAlaThrPheCysSerLeuLeuLysThrT : 378 |||||||||||| !!:!!|||:!!!.!:!: !|||||| ..!:!!||||||.!!: ThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaS 807496 : ACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTT : 807555 379 : hrAlaGlyTyrIleSerValLeu : 385 !!!.!..!|||:!:||||||:!! erGlySerTyrLeuSerValMet 807556 : CTGGCTCGTATCTGTCTGTAATG : 807578 vulgar: CbirOr92NTE 300 385 . KQ414940.1 807323 807578 + 165 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807324 807578 165 + . gene_id 1 ; sequence CbirOr92NTE ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807324 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807324 807578 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807324 807578 165 + . alignment_id 1 ; Query CbirOr92NTE ; Align 807324 301 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr99NTE Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 296 -> 386 Target range: 807314 -> 807584 297 : IleValSerValThrMetLeuLeuAlaHisThrPheLeuTyrCysGlyAlaGlyGluI : 316 .!!||| !:!!..!! |||||| !!!. !!:!||||||..! !||||||.!.! PheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnT 807315 : TTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACA : 807372 317 : leMetValGluHisCysAspAlaLeuTyrGluAlaIleCysAspLeuAspTrpTyrLy : 335 !:!:! !..!!.. !!!:! !:!! :!!||| !! !|||! ! !||||||:: hrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrAr 807373 : CACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCG : 807429 336 : sLeuAspSerArgGlnSerArgAsnLeuIleLeuLeuMetIleArgAlaSerGluPro : 354 :! ! !!.!!!.! !:!!|||:!!|||:!!|||:!!!!: !|||!.!!:!..!||| gCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerPro 807430 : TTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCT : 807486 355 : PheArgIleThrAlaGlyLysValIleProLeuThrMetThrThrPheCysSerLeuL : 374 !:!|||||||||||||||||| !!:!!|||:!!!.!:!: !|||||| ..!:!!| TyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleL 807487 : TATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATAC : 807546 375 : euLysThrSerAlaGlyTyrIleSerPheLeuLeuVal : 386 |||||.!!|||!.!..!|||:!:||| ! :!! !||| euLysAlaSerGlySerTyrLeuSerValMetLysVal 807547 : TGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTA : 807584 vulgar: CbirOr99NTE 296 386 . KQ414940.1 807314 807584 + 160 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807315 807584 160 + . gene_id 1 ; sequence CbirOr99NTE ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807315 807584 . + . KQ414940.1 exonerate:protein2genome:local exon 807315 807584 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807315 807584 160 + . alignment_id 1 ; Query CbirOr99NTE ; Align 807315 297 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr89NTE Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 299 -> 388 Target range: 807320 -> 807587 300 : ValMetIleAsnPheCysGlyTyrMetCysLeuPheCysAlaAlaGlyGluArgLeuV : 319 :!!|||:!:!.!!!. ! ! :!!! !|||!:!..! !||||||.!.! !|||! LeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuG 807321 : CTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCG : 807378 320 : alThrGlnCysGluAlaMetTyrTyrAlaAlaTyrGluTyrGluTrpTyrLysLeuGl : 338 !:!!!:! !|||! !!!: ! |||||||||!!:! ! ||||||:::! !.! luSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHi 807379 : AGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCA : 807435 339 : uProLysLysAlaLysValLeuValLeuLeuMetIleArgThrSerLysProLeuTyr : 357 . ! ! !|||!:!! !|||:!!|||:!!!!: !||| !!:!..!|||! ! ! sGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArg 807436 : CGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGT : 807492 358 : IleThrAlaGlyLysIlePheProMetThrMetSerThrPheCysAsnIleIleLysT : 377 |||||||||||||||.!! !!||||||!.!:!:! !|||||| .!.|||:!:|||. IleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysA 807493 : ATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAG : 807552 378 : hrSerAlaGlyTyrValSerValLeuLeuAlaMet : 388 !!|||!.!..!|||:!!||||||:!! !!.!||| laSerGlySerTyrLeuSerValMetLysValMet 807553 : CTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: CbirOr89NTE 299 388 . KQ414940.1 807320 807587 + 148 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807321 807587 148 + . gene_id 1 ; sequence CbirOr89NTE ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807321 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807321 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807321 807587 148 + . alignment_id 1 ; Query CbirOr89NTE ; Align 807321 300 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr95NTE Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 303 -> 385 Target range: 807332 -> 807578 304 : LeuLeuAlaHisThrPheLeuTyrCysCysAlaGlyGluIleIleIleGluHisCysA : 323 |||||| !!!. !!:!||||||..!! !||||||.!.! !:!! ..!!.. !! LeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrG 807333 : TTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCG : 807390 324 : spAlaValTyrGlnAlaIleTyrAspPheAspTrpTyrLysLeuGluAlaArgLysAl : 342 !:! !:!! |||||| !||||||! ! !||||||:::! !.!.!.!!.! !|| luGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAl 807391 : AAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGC : 807447 343 : aArgGlyLeuValLeuLeuMetIleArgAlaSerGluProPheArgIleThrAlaGly : 361 ||||! !|||:!!|||:!!!!: !|||!.!!:!..!|||!:!||||||||||||||| aArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGly 807448 : CAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGA : 807504 362 : LysValIleProLeuThrLeuThrThrPheCysSerLeuLeuLysThrSerAlaGlyT : 381 ||| !!:!!|||:!!!.!||| !|||||| ..!:!!||||||.!!|||!.!..!| LysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerT 807505 : AAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGT : 807564 382 : yrIleSerPheLeu : 385 ||:!:||| ! :!! yrLeuSerValMet 807565 : ATCTGTCTGTAATG : 807578 vulgar: CbirOr95NTE 303 385 . KQ414940.1 807332 807578 + 172 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807333 807578 172 + . gene_id 1 ; sequence CbirOr95NTE ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807333 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807333 807578 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807333 807578 172 + . alignment_id 1 ; Query CbirOr95NTE ; Align 807333 304 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr97NTE Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 194 Query range: 181 -> 386 Target range: 806538 -> 807578 182 : ThrPheLeuIleGlnAlaIleThrIlePheLeuAlaAlaValValTyrThrSerValA : 201 ..!!!.|||:!:|||!.!!!: !||||||!!! !||||||!.!:!! !.!! !| ValLeuLeuLeuGlnGlyMetHisIlePhePheAsnAlaValAlaHisCysGlyAsnA 806539 : GTGTTACTGCTGCAAGGGATGCACATTTTCTTCAACGCCGTGGCTCACTGCGGCAACG : 806596 202 : spAlaPheLeuGlyLeuThrIleLeuHisLeuCysGlyGlnLeuGluAsnPheLysGl : 220 ||!.!.!!!!! ! ! !! :!!|||||||||||||||!!!|||! !.!.||| spGlyLeuPhePheSerLeuThrMetHisLeuCysGlyGlnPheGluIleLeuLysMe 806597 : ACGGCCTCTTCTTCAGCCTGACGATGCATCTGTGCGGTCAGTTTGAAATTCTGAAGAT : 806653 221 : yArgIleAlaValLeuSerSerCysGlnAsnPheIleArgVal<->LeuSerAsnAsn : 238 !!.!:!:|||! !:!!..!! ! !! ! ! !||| ! :!!.!! ! ! tAsnLeuAlaGluIleGluPheGluAlaIleAlaCysArgLysArgIleGlyValLeu 806654 : GAATCTGGCGGAGATCGAGTTCGAGGCGATCGCTTGTCGGAAGCGAATCGGCGTTCTC : 806710 239 : ValMetAsnHisLeuArgLeuIleArgPheAlaSerIleIleGluAspThrPheThrL : 258 |||! ...|||! !!:!||| !!!..!!!:! !:!!|||.!.!:!|||!:!: ValLysArgHisCysLysLeuAlaValLeuThrAsnAspLeuGluGlnSerPheSerM 806711 : GTGAAACGACACTGCAAACTGGCGGTGTTGACCAACGATCTCGAGCAGAGCTTCAGTA : 806770 259 : euMetMetLeuGlyLeuValPheTyrPheGlyIleValPheCysLeuHisGlyPheLe : 277 !!!!:!!:|||! !! !:!!.!. !!.!:!::!!.!!|||:!!.!.||| ! etIleIleLeuValGlnLeuMetMetSerAlaLeuLeuIleCysValGluGlyGluSe 806771 : TGATTATTCTGGTGCAACTCATGATGAGTGCGTTGCTAATTTGCGTAGAAGGTGAGTC : 806827 278 : uLeuPhe{T} >>>> Target Intron 1 >>>> {hr}TyrValMetGlnVal : 285 !||||||{ } 422 bp { !}!:!|||.!.! !||| rLeuPhe{G}+- ++{ly}PheValPheLeuVal 806828 : GTTGTTC{G}ga.........................ag{GT}TTCGTCTTCCTGGTC : 807273 286 : IleThrGlyAspPheSerPheAlaGlnLeuCysPheProIleIleGlyIleThrIleL : 305 ! !.!! ..! !!.! ! !! !.!!:!! !!!:..!! !| AlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuMetValThrL 807274 : GCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGATGGTGACTT : 807333 306 : euPheThrHisThrPheLeuTyrCysGlyAlaGlyGluIleValThrAsnGlnCysGl : 324 ||.!.! !!!. !!:!||||||..! !||||||.!.! !:!! !:::!:! !|| euLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGl 807334 : TGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGA : 807390 325 : uGlyIleTyrArgAlaMetCysAspLeuGluTrpTyrLysLeuGluSerArgLysAla : 343 |! !||| !:!||| ! !|||! ! ||||||:::! !.!..!!!.! !||| uGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAla 807391 : AGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCC : 807447 344 : LysSerLeuIleProLeuMetIleArgAlaLysGlnProPheArgIleThrAlaGlyL : 363 !:!..!|||:!! !:!!!!: !|||!.!!!...!|||!:!|||||||||||||||| ArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyL 807448 : AGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAA : 807507 364 : ysIlePheProLeuThrMetThrThrPheCysSerLeuLeuLysThrSerAlaGlyTy : 382 ||.!! !!|||:!!!.!:!: !|||||| ..!:!!||||||.!!|||!.!..!|| ysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTy 807508 : AATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTA : 807564 383 : rIleSerPheLeu : 386 |:!:||| ! :!! rLeuSerValMet 807565 : TCTGTCTGTAATG : 807578 vulgar: CbirOr97NTE 181 386 . KQ414940.1 806538 807578 + 194 M 53 159 G 0 3 M 45 135 S 0 1 5 0 2 I 0 418 3 0 2 S 1 2 M 106 318 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806539 807578 194 + . gene_id 1 ; sequence CbirOr97NTE ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 806539 806836 . + . KQ414940.1 exonerate:protein2genome:local exon 806539 806836 . + . insertions 3 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 806837 806838 . + . intron_id 1 ; splice_site "GA" KQ414940.1 exonerate:protein2genome:local intron 806837 807258 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807578 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 806539 807578 194 + . alignment_id 1 ; Query CbirOr97NTE ; Align 806539 182 159 ; Align 806701 235 135 ; Align 807261 281 318 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr102PNI Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 270 -> 332 Target range: 117761 -> 117947 271 : AlaPheTyrGlyPheLeuPheGlyThrCysGluAlaIleTyrAspAlaAlaTyrGluT : 290 ::!|||||| ! !!! !|||! ! ! !!||||||||| ! !||||||||| ! SerPheTyrPheValTyrPheValGlnSerGluAlaIleGlyArgAlaAlaTyrThrV 117762 : AGTTTCTATTTCGTCTACTTTGTTCAGAGCGAAGCGATCGGTCGTGCAGCCTATACGG : 117819 291 : yrAsnTrpTyrThrLeuGluProLysGluThrLysAsnLeuLeuMetIleMetIleAr : 309 !|||:!! !! ! ! ! ! !||| ! !|||:!:|||||||| alProTrpHisTrpTyrProArgCysLeuArgLysProThrAsnMetLeuMetIleAr 117820 : TGCCTTGGCATTGGTACCCTCGTTGCTTGCGAAAACCAACCAACATGCTGATGATCAG : 117876 310 : gAlaAsnLysProLeuTyrLeuThrAlaGlyLysLeuPheProMetThrMetAlaThr : 328 |!.!.!.||||||:!! !|||||||||||||||:!! !! !:!::!!:!!! !||| gGlyGlnLysProValArgLeuThrAlaGlyLysIleValGlyLeuSerLeuGluThr 117877 : AGGTCAGAAACCGGTTCGTCTGACCGCCGGAAAAATCGTCGGACTCTCTCTGGAAACG : 117933 329 : PheCysAsnLeu : 332 |||..!::!:!! PheAlaSerVal 117934 : TTTGCCTCTGTA : 117947 vulgar: CbirOr102PNI 270 332 . KQ414940.1 117761 117947 + 100 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 117762 117947 100 + . gene_id 1 ; sequence CbirOr102PNI ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 117762 117947 . + . KQ414940.1 exonerate:protein2genome:local exon 117762 117947 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 117762 117947 100 + . alignment_id 1 ; Query CbirOr102PNI ; Align 117762 271 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr98NTE Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 298 -> 390 Target range: 807317 -> 807593 299 : ValGlyValThrThrLeuLeuThrHisThrPheLeuTyrCysGlyAlaGlyGluLeuV : 318 ||| !:!!..!|||||||||! !!!. !!:!||||||..! !||||||.!. !: ValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrL 807318 : GTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACAC : 807375 319 : alThrGluGlnCysGluAlaValTyrArgAlaMetCysAspLeuGluTrpTyrLysLe : 337 !! !..!!:! !|||! !:!! !:!||| ! !|||! ! ||||||:::! euGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCy 807376 : TCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTG : 807432 338 : uGluSerLysArgAlaArgAsnLeuIleLeuLeuMetIleArgValAsnGluProPhe : 356 !.!..!! ! !||||||:!!|||:!!|||:!!!!: !|||! !|||..!|||!:! sHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyr 807433 : CCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTAT : 807489 357 : ArgIleThrAlaGlyLysValValProLeuThrMetThrThrPheCysSerLeuLeuL : 376 |||||||||||||||||| !!||||||:!!!.!:!: !|||||| ..!:!!|||| ArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuL 807490 : CGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGA : 807549 377 : ysThrSerAlaGlyTyrIleSerPheLeuLeuAlaArgArgAsp : 390 ||.!!|||!.!..!|||:!:||| ! :!! !!.!! !! !||| ysAlaSerGlySerTyrLeuSerValMetLysValMetMetAsp 807550 : AAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: CbirOr98NTE 298 390 . KQ414940.1 807317 807593 + 175 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807318 807593 175 + . gene_id 1 ; sequence CbirOr98NTE ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807318 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807318 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807318 807593 175 + . alignment_id 1 ; Query CbirOr98NTE ; Align 807318 299 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr104NTE Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 319 -> 377 Target range: 4381 -> 4207 320 : GlnCysGluAlaValTyrGluAlaAlaTyrGluTyrAsnTrpTyrThrLeuGluSerLysLy : 340 |||||| ! !||| !|||!.!!.!||| ! :!!|||||| !||| !..!!:!!: GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 341 : sAlaArgAsnLeuLeuMetIleMetIleArgAlaAsnLysProLeuTyrLeuThrAlaGlyL : 361 ! !! !:!!|||:!!:!!|||!!:! !|||:!!||| ! !:!! ! :!!|||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 362 : ysLeuPheProMetThrMetAlaMetPheCysAsnLeuLeuLysThrSer : 377 ||:::||| |||:!!:!: !! !||| !!:!!:!! !:!!|||!:! ysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 4208 vulgar: CbirOr104NTE 319 377 . LHQN01027980.1 4381 4207 - 103 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4208 4381 103 - . gene_id 1 ; sequence CbirOr104NTE ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4208 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4208 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4208 4381 103 - . alignment_id 1 ; Query CbirOr104NTE ; Align 4382 320 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr119PC Target: LHQN01049708.1 Habropoda laboriosa contig49708, whole genome shotgun sequence Model: protein2genome:local Raw score: 200 Query range: 0 -> 84 Target range: 57 -> 309 1 : MetGluPheAlaThrThrIleSerProGlnIleLysPheGlyLeuGlnAlaIleGlyIleTrpP : 22 ||| !!!. !!.!|||!!:|||! !...:!!||||||||||||!!. !:!!|||||||||| MetIleLeuArgAsnThrMetSerGlnSerValLysPheGlyLeuHisPheValGlyIleTrpP 58 : ATGATATTACGAAATACAATGAGCCAATCTGTTAAGTTTGGTCTACATTTTGTCGGTATTTGGC : 121 23 : roGlySerSerTyrSerLeuLeuTyrArgAlaPheTrpThrIleThrLeuGlyValThrGlnTh : 43 |||||!!! !!!:! !! !|||:!!!:! ! !|||..!|||.!!:!!!.!||| !||||| roGlyThrProPheProSerLeuHisLysIleGlyTrpValIleAlaMetAlaValLeuGlnTh 122 : CAGGAACACCATTCCCAAGTTTACATAAAATTGGTTGGGTCATAGCGATGGCTGTACTTCAAAC : 184 44 : rPheGlnPheLysTyrIleIleSerCysIleLysAsnAsnAsnPheProAspLeuValAspSer : 64 |!:!|||!:!!:!|||||||||!!! ! !|||::!:!!!:!.!! !! ! !:!!|||!:! rTyrGlnTyrArgTyrIleIleThrHisTyrLysSerAspSerLeuMetValThrIleAspAsn 185 : TTATCAGTACAGATACATCATTACGCATTATAAATCTGATAGTCTTATGGTCACAATAGATAAT : 247 65 : ValSerThrThrLeuProTyrSerLeuLeuCysLeuLysLeuIleIleLeuTrpLeuAsn : 84 :!!|||! !|||:!!|||!:!!!!|||::: :::|||||||||||| ||| !||| LeuSerIleThrMetProPheThrLeuValLeuIleLysLeuIleIleThrTrpAlaAsn 248 : TTGAGCATCACCATGCCATTCACTCTagtgttaattaaattaattattacttgGGCAAAT : 309 vulgar: CbirOr119PC 0 84 . LHQN01049708.1 57 309 + 200 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049708.1 exonerate:protein2genome:local gene 58 309 200 + . gene_id 1 ; sequence CbirOr119PC ; gene_orientation . LHQN01049708.1 exonerate:protein2genome:local cds 58 309 . + . LHQN01049708.1 exonerate:protein2genome:local exon 58 309 . + . insertions 0 ; deletions 0 LHQN01049708.1 exonerate:protein2genome:local similarity 58 309 200 + . alignment_id 1 ; Query CbirOr119PC ; Align 58 1 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr119PC Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 316 -> 368 Target range: 824 -> 980 317 : SerLysSerValAlaAsnAlaAlaTyrGluValPheTrpTyrAsnValLysProSerGluSerA : 338 |||:!! !:!!!.!|||.!!||||||||| !!.!!||||||:!!:!!::: !!!!!||||||! SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSerG 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAGCC : 888 339 : rgMetLeuLeuIleLeuIleLeuArgSerGlnLysArgLeuThrLeuThrIleGlyLysPheAs : 359 :!:!:|||:!! !:!!|||||||||||||||||| !!!!!|||!..|||...|||||||||:: lnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysPheSe 889 : AACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaattttc : 951 360 : nAspLeuSerLeuGlnValPheAlaSer : 368 :...|||||||||:!! !|||.!!:!! rSerLeuSerLeuGluSerPheThrAla 952 : aagtctCTCCTTGGAAAGCTTTACGGCC : 980 vulgar: CbirOr119PC 316 368 . LHQN01050112.1 824 980 + 137 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 980 137 + . gene_id 1 ; sequence CbirOr119PC ; gene_orientation . LHQN01050112.1 exonerate:protein2genome:local cds 825 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 980 137 + . alignment_id 1 ; Query CbirOr119PC ; Align 825 317 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr124 Target: KQ414588.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold11, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 323 -> 392 Target range: 776514 -> 776799 324 : AlaLysSerLysSerIleGlyGluAlaIleTyrGlySerLeuTrpTyrAsnLeuSerP : 343 ...||| |||! !:!! ! :!!! !|||.!!:!!|||||||||||| !..! ValLysIleLysIleValHisPheSerArgTyrSerAlaLeuTrpTyrAsnSerAspL 776515 : gtgaaaatcaAAATTGTCCATTTTTCTAGATACAGCGCTTTGTGGTATAACAGCGACA : 776572 344 : roSerAspThrArgIleLeuLysPheIleMetLeuArgCysGlnLysArgLeuThrIl : 362 !!!! ! !:!:!!! !!!. :!: !!.!|||! !... !! ! !|| ysArgThrGlnSerLeuPheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIl 776573 : AGAGAACGCAATCGTTGTTTGTATTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAAT : 776629 363 : eThrAlaGlyGlyValIleAspLeuThrLeuGluGlyPheThrSer >>>> Targe : 378 |||||||||||||:!!||| :!!!.!|||:!!.!!|||:!!..! eThrAlaGlyGlyLeuIleThrMetAsnLeuGlnSerPheSerGlu++ 776630 : AACAGCCGGTGGACTAATTACAATGAACTTGCAAAGTTTCTCAGAGgt.......... : 776679 379 : t Intron 1 >>>> IleMetLysAlaSerValSerTyrValSerValLeuAsnAl : 391 78 bp |||:!:|||.!!|||||||||||| !! !||||||!!.:! ++IleValLysThrSerValSerTyrTyrMetValLeuLysSe 776680 : ...............agATTGTAAAGACGTCTGTCTCGTACTACATGGTACTGAAATC : 776794 392 : aMet : 392 !:!: rVal 776795 : CGTA : 776799 vulgar: CbirOr124 323 392 . KQ414588.1 776514 776799 + 110 M 54 162 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414588.1 exonerate:protein2genome:local gene 776515 776799 110 + . gene_id 1 ; sequence CbirOr124 ; gene_orientation + KQ414588.1 exonerate:protein2genome:local cds 776515 776676 . + . KQ414588.1 exonerate:protein2genome:local exon 776515 776676 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local splice5 776677 776678 . + . intron_id 1 ; splice_site "GT" KQ414588.1 exonerate:protein2genome:local intron 776677 776754 . + . intron_id 1 KQ414588.1 exonerate:protein2genome:local splice3 776753 776754 . + . intron_id 0 ; splice_site "AG" KQ414588.1 exonerate:protein2genome:local cds 776755 776799 . + . KQ414588.1 exonerate:protein2genome:local exon 776755 776799 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local similarity 776515 776799 110 + . alignment_id 1 ; Query CbirOr124 ; Align 776515 324 162 ; Align 776755 378 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr132 Target: KQ414615.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold33, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 294 -> 370 Target range: 2576788 -> 2577016 295 : ValPheTyrIleThrIleAsnLeuGluValPheIleTyrCysLeuSerGlyGluTy : 313 ||| !||| !! !:!!:!!:!! !! !! !!:||| ::: ... :: ValAsnTyrAlaIleValAspIle***Gln***MetTyrPheIleLeuAsn***Ph 2576789 : GTGAATTATGCAATAGTAGATATATAACAATAGATGTActtcattttaaattaatt : 2576843 314 : rLeuSerAlaLysSerLysMetIleGlyAsnAlaAlaTyrAsnAlaLeuTrpTyrA : 332 :... |||||| ! |||.!!!..|||||||||::: !! !|||! !. ePheLeu***LysSerPheSerIleSerThrAlaAlaTyrSerIleGlnTrpCysG 2576844 : tttcttatgaaAGAGTTTCAGTATAAGTACAGCTGCATATTCAATACAGTGGTGTC : 2576900 333 : spIleProThrLysGlnSerArgIleValSerPheIleIleLeuArgSerGlnLys : 350 !.:!:|||||| ! !.! ! !|||!!!.!.||||||||||||||||||!:! lnLeuProThrPheLeuLysAspGluValCysMetIleIleLeuArgSerGlnArg 2576901 : AACTGCCAACTTTTCTTAAAGACGAAGTATGCATGATTATACTACGTTCTCAAAGA : 2576954 351 : LeuLeuThrIleThrSerGlyLysIleMetAspLeuSerLeuGluArgPheThrSe : 369 ! ! ! !||||||:!!||||||||| ! ::: ||||||...||||||:: SerSerTyrIleThrAlaGlyLysIleTyrValMetHisLeuGluAsnPheThrAl 2576955 : TCTAGCTACATTACTGCGGGAAAGATATATGTGAtgcatttggaaaatttcaccgc : 2577011 370 : rVal : 370 :||| aVal 2577012 : ggta : 2577016 vulgar: CbirOr132 294 370 . KQ414615.1 2576788 2577016 + 108 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414615.1 exonerate:protein2genome:local gene 2576789 2577016 108 + . gene_id 1 ; sequence CbirOr132 ; gene_orientation . KQ414615.1 exonerate:protein2genome:local cds 2576789 2577016 . + . KQ414615.1 exonerate:protein2genome:local exon 2576789 2577016 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local similarity 2576789 2577016 108 + . alignment_id 1 ; Query CbirOr132 ; Align 2576789 295 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr122 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 323 -> 380 Target range: 204763 -> 204934 324 : LeuSerAlaLysSerLysSerIleSerAspAlaAlaTyrGluCysPheTrpTyrAspL : 343 |||||| !||||||:!!..!:!!! !! !||||||||||||||| |||! :!!| LeuSerIleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnL 204764 : ttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATT : 204821 344 : euThrProSerGluSerArgIleLeuMetPheLeuMetLeuArgAlaGlnLysArgLe : 362 ||! ! !!!:!:!!:!!!:!! !|||!!:!!.:!!||| !|||||||||!:!! !|| euLysSerAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLe 204822 : TGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCT : 204878 363 : uThrIleThrAlaGlyLysIleThrAspLeuSerLeuGluGlyPheThrThrIle : 380 | !:!!||||||||||||::: ::!!!!:!! ! !||| !!.!:!! uCysLeuThrAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsnVal 204879 : CTGTTTAACCGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: CbirOr122 323 380 . KQ414617.1 204763 204934 + 114 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204764 204934 114 + . gene_id 1 ; sequence CbirOr122 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204764 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204764 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204764 204934 114 + . alignment_id 1 ; Query CbirOr122 ; Align 204764 324 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr129PSE(F) Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 414 Query range: 195 -> 379 Target range: 1394161 -> 1395914 196 : ValLeuHisValThrGlyGlnIleAspIleLeuArgGlnGluLeuLeuMetThrCy : 214 :!!!!!|||:!! !|||||||||!!:!!:||| |||:!! !||| ... IlePheHisIleGlyGlyGlnIleGluMetLeu---GlnLysAlaLeuThrAsnIl 1394162 : ATATTTCATATTGGAGGACAGATAGAAATGTTG---CAGAAAGCTCtgacaaatat : 1394213 215 : sAsnAspGluSerSerGluSerSerSerIleIleAlaGlyIleArgLeuLeuIleT : 233 ::: :::..!..!:!! !!!!! ! ! ! ! !! !!:!! !|||||| eSerIleLysAspGluLysHisArgLeuSerArgAsnThrThrLysSerLeuIleH 1394214 : ttctattaaagATGAGAAACACAGATTATCGAGAAACACCACCAAATCATTAATTC : 1394270 234 : hrArgHisGlnLysIleIleThrLeuSerAspAsnIleGluGluLeuTyrSerAsp : 251 !||||||!!.::!||||||! ! !||||||::!||||||...|||!:!||| !! isArgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyr 1394271 : ACAGACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATAC : 1394324 252 : IleAlaLeuMetGlnPheLeuSerAsnThrLeuValIleCysCysIleGlyPheTh : 270 |||||||||||||||!::|||!!!|||||||||||||||||||||||||||||| IleAlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGlyPheLe 1394325 : ATTGCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGATTCTT : 1394381 271 : rIleIleAla >>>> Target Intron 1 >>>> SerLeuGlyLysAlaGl : 279 !|||:!! ! 464 bp :!!!!!..!! !! || uIleValIle++ ++AlaPheAsnThrAspGl 1394382 : AATAGTAATTgt.........................agGCATTTAATACAGatgg : 1394872 280 : yValThrIleIleLeuLeuLysSerAlaIlePheTyrValAlaValThrLeuGluA : 298 | ...:::|||::: !:!!||||||:!!|||:!!|||:!!|||| yAsnIleLysThrPheIleLysThrLeuLeuPheTyrIleAlaIleThrMetGluA 1394873 : aaatataaaaacatttataaaaacattACTCTTTTACATCGCTATCACTATGGAAG : 1394929 299 : laPheIlePheCysPheAlaGlyGluTyrLeuSerAlaLys >>>> Target I : 312 |||||||||||! !||||||||||||||||||||| !||| 353 laPheIlePheSerPheAlaGlyGluTyrLeuSerAsnLys++ 1394930 : CATTCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAAgt............. : 1394973 313 : ntron 2 >>>> SerLysSerIleGlyAspAlaAlaTyrGluSerLeuTrpTyr : 325 bp ||| !||||||.!!:!!|||||||||...|||! !|||||| ++SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyr 1394974 : ............agAGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTAC : 1395363 326 : AsnMetThrProAspLysCysArgIleIleLeuPheValIleLeuArgSerGlnLy : 344 !:!! !|||.!. ! ! !.!||||||:!!.!!:!!!!::!!|||||||||!: LeuLeuAspProGlnAspArgHisIleIleIleLeuLeuMetIleArgSerGlnAr 1395364 : CTTCTGGATCCTCAAGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAG : 1395420 345 : sArgLeuThrIleThrAlaGlyAsnValMetAspLeuSerLeuGlnGlyPheThrT : 363 !|||||||||||||||||||||!!. !!|||||||||||||||:!!||||||.!!! gArgLeuThrIleThrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaA 1395421 : ACGATTAACAATCACCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAA : 1395477 364 : hr >>>> Target Intron 3 >>>> ValMetLysAlaSerAlaSerTyrI : 372 .! 387 bp ::::!:||||||||||||||||||| sn++ ++IleLeuLysAlaSerAlaSerTyrI 1395478 : ATgt.........................agatcTTAAAGGCTTCTGCATCGTACA : 1395891 373 : leSerMetLeuHisAlaMetTyr : 379 |||||:!:|||:!!||||||||| leSerValLeuTyrAlaMetTyr 1395892 : TATCTGTACTGTATGCGATGTAC : 1395914 vulgar: CbirOr129PSE(F) 195 379 . KQ414716.1 1394161 1395914 + 414 M 11 33 G 1 0 M 66 198 5 0 2 I 0 460 3 0 2 M 38 114 5 0 2 I 0 349 3 0 2 M 52 156 5 0 2 I 0 383 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394162 1395914 414 + . gene_id 1 ; sequence CbirOr129PSE(F) ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394162 1394392 . + . KQ414716.1 exonerate:protein2genome:local exon 1394162 1394392 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local splice5 1394393 1394394 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394393 1394856 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394855 1394856 . + . intron_id 0 ; splice_site "aG" KQ414716.1 exonerate:protein2genome:local cds 1394857 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394857 1394970 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394971 1394972 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394971 1395323 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1395322 1395323 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1395324 1395479 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395479 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1395480 1395481 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1395480 1395866 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1395865 1395866 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1395867 1395914 . + . KQ414716.1 exonerate:protein2genome:local exon 1395867 1395914 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394162 1395914 414 + . alignment_id 1 ; Query CbirOr129PSE(F) ; Align 1394162 196 33 ; Align 1394195 208 198 ; Align 1394857 274 114 ; Align 1395324 312 156 ; Align 1395867 364 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr129PSE(F) Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 356 Query range: 227 -> 378 Target range: 1408291 -> 1409528 228 : IleArgLeuLeuIleThrArgHisGlnLysIleIleThrLeuSerAspAsnIleGl : 246 :!:|||!!!!!!|||!:!|||||||||:!!||||||! !!!!:!!!!:!..||||| LeuArgPhePheIleSerArgHisGlnGlnIleIleIlePheAlaGluArgIleGl 1408292 : CTGAGATTCTTCATCAGCAGACATCAACAGATCATCATATTTGCAGAGAGAATAGA : 1408346 247 : uGluLeuTyrSerAspIleAlaLeuMetGlnPheLeuSerAsnThrLeuValIleC : 265 |:!!|||!:!!!! !!:!!||||||! |||.!!|||||||||||||||:!!! !| uLysLeuPheThrTyrLeuAlaLeuSerGlnLeuLeuSerAsnThrLeuIleThrC 1408347 : AAAACTGTTTACGTATCTAGCACTTAGTCAACTTCTCTCGAATACCCTAATTACTT : 1408403 266 : ysCysIleGlyPheThrIleIleAla >>>> Target Intron 1 >>>> S : 274 |||||:!:|||!:!! !||| ! ! 92 bp : ysCysValGlyTyrIleIleAlaPhe++ ++A 1408404 : GCTGCGTGGGTTATATTATCGCATTTgt.........................agG : 1408522 275 : erLeuGlyLysAlaGlyValThrIleIleLeuLeuLysSerAlaIlePheTyrVal : 292 !!||| !!!. !..!! ! !! !!!:|||:!!|||! !!.!:!!!:!|||:!! laLeuGlnAsnAsnAsnGlyPheLysMetLeuIleLysPheValValTyrTyrMet 1408523 : CACTACAAAATAATAATGGATTTAAAATGTTGATCAAATTTGTTGTATATTACATG : 1408576 293 : AlaValThrLeuGluAlaPheIlePheCysPheAlaGlyGluTyrLeuSerAlaLy : 311 |||||| !! !||||||||||||!:!|||||||||||||||||||||!:! !|| AlaValCysSerGluAlaPheIleTyrCysPheAlaGlyGluTyrLeuAsnIleLy 1408577 : GCTGTGTGCTCAGAAGCGTTCATATACTGCTTTGCTGGAGAGTACCTTAATATCAA : 1408633 312 : s >>>> Target Intron 2 >>>> SerLysSerIleGlyAspAlaAlaTy : 320 | 414 bp |||||| |||||||||.!!||||| s++ ++SerLysLeuIleGlyAspThrAlaTy 1408634 : Ggt.........................agagtaaactgattggagACACGGCGTA : 1409074 321 : rGluSerLeuTrpTyrAsnMetThrProAspLysCysArgIleIleLeuPheValI : 339 ||||! !||||||||||||||| ! !! ! :!! !!|||:!!!!:|||.!!|||| rGluPheLeuTrpTyrAsnMetHisSerLysGluSerArgLeuMetLeuLeuValI 1409075 : TGAATTTCTTTGGTATAATATGCATTCGAAGGAAAGCCGACTTATGTTGCTTGTAA : 1409131 340 : leLeuArgSerGlnLysArgLeuThrIleThrAlaGlyAsnValMetAspLeuSer : 357 ||||||||||||||||| !!!!!|||...||| |||... ...|||||| leLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysPheAlaSerLeuSer 1409132 : TACTACGATCACAGAAAGGATTTACtttcacttttggaaaatttgcaagtCTTTCC : 1409185 358 : LeuGlnGlyPheThrThr >>>> Target Intron 3 >>>> ValMetLys : 366 :!!:!!.!!|||.!! ! 278 bp :::|||||| MetGluSerPheAlaGly++ ++IleMetLys 1409186 : ATGGAAAGTTTTGCAGGCgt.........................agattATGAAA : 1409490 367 : AlaSerAlaSerTyrIleSerMetLeuHisAlaMet : 378 |||||||||||||||||||||:!:|||! !|||||| AlaSerAlaSerTyrIleSerValLeuLeuAlaMet 1409491 : GCTTCTGCATCGTATATATCCGTATTGCTCGCAATG : 1409528 vulgar: CbirOr129PSE(F) 227 378 . KQ414716.1 1408291 1409528 + 356 M 46 138 5 0 2 I 0 88 3 0 2 M 38 114 5 0 2 I 0 410 3 0 2 M 52 156 5 0 2 I 0 274 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408292 1409528 356 + . gene_id 2 ; sequence CbirOr129PSE(F) ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408292 1408429 . + . KQ414716.1 exonerate:protein2genome:local exon 1408292 1408429 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408430 1408431 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408430 1408521 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1408520 1408521 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1408522 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408522 1408635 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408636 1408637 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408636 1409049 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1409048 1409049 . + . intron_id 1 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409050 1409205 . + . KQ414716.1 exonerate:protein2genome:local exon 1409050 1409205 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1409206 1409207 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1409206 1409483 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1409482 1409483 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409484 1409528 . + . KQ414716.1 exonerate:protein2genome:local exon 1409484 1409528 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408292 1409528 356 + . alignment_id 2 ; Query CbirOr129PSE(F) ; Align 1408292 228 138 ; Align 1408522 274 114 ; Align 1409050 312 156 ; Align 1409484 364 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr129PSE(F) Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 253 Query range: 227 -> 364 Target range: 1401096 -> 1402594 228 : IleArgLeuLeuIleThrArgHisGlnLysIleIleThrLeuSerAspAsnIleGl : 246 |||:::......|||..!|||||||||:!!||||||..!!!!:!!!!:!..||||| IleLysPhePheIleAsnArgHisGlnGluIleIleValPheAlaGluArgIleGl 1401097 : ataaaattcttcattaACAGACATCAGGAAATTATTGTTTTTGCAGAAAGAATTGA : 1401151 247 : uGluLeuTyrSerAspIleAlaLeuMetGlnPheLeuSerAsnThrLeuValIleC : 265 |:!!|||!:!!!! !!!!:||||||! |||.!!:!!|||||||||:!!:!!|||| uLysLeuPheThrTyrMetAlaLeuSerGlnLeuValSerAsnThrIleIleIleC 1401152 : GAAACTTTTTACATACATGGCTCTCAGTCAACTTGTGTCCAATACGATAATTATAT : 1401208 266 : ysCysIle{Gl} >>>> Target Intron 1 >>>> {y}PheThrIleIle : 272 |||||:!!{||} 83 bp {|} |||::: ysCysVal{Gl}-+ ++{y}Lys***IleLeu 1401209 : GTTGCGTA{GG}at.........................ag{g}aaataaatatta : 1401312 273 : AlaSerLeuGlyLysAlaGlyValThrIleIleLeuLeuLysSerAlaIlePheTy : 291 :!!:!! !! ! !..!! !..! !:!:|||||||||||| :::||||| GlnAlaValHisIleAspAsnGlyValProLeuLeuLeuLysSerLeuLeuPheTy 1401313 : caggCAGTACATATCGACAATGGAGTTCCTCTGTTACTCAaatctcttttatttta : 1401369 292 : rValAlaValThrLeuGluAlaPheIlePheCysPheAlaGlyGluTyrLeuSerA : 310 ||||!.!:!! !|||||||||||||||!:!||||||!.!||||||||||||||| rValValIleCysLeuGluAlaPheIleTyrCysPheValGlyGluTyrLeuSerI 1401370 : tgtgGTTATTTGTTTAGAAGCGTTTATATACTGCTTTGTCGGAGAATATCTCAGTA : 1401426 311 : la{Ly} >>>> Target Intron 2 >>>> {s}SerLysSerIleGlyAsp : 317 !{||} 1004 bp {|}|||:!! !||||||:!! le{Ly}+- --{s}SerGlnLeuIleGlyAsn 1401427 : TC{AA}gg.........................ta{G}AGCCAACTAATCGGCAAT : 1402451 318 : AlaAlaTyrGluSerLeuTrpTyrAsnMetThrProAspLysCysArgIleIleLe : 336 .!!|||||||||! !|||||||||:!!:!: ! !! !:!! !!!:!:!!:!!:! ThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSerGlnLeuLeuIl 1402452 : ACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAGCCAACTTCTAAT : 1402508 337 : uPheValIleLeuArgSerGlnLysArgLeuThrIleThrAlaGlyAsnValMetA : 355 ! !||||||||||||||||||||| !!!!!|||...||| |||... . eProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysPheSerS 1402509 : ACCTGTAATATTGAGGTCTCAAAAGGGTTTCACGTttacttttggaaaattttcaa : 1402565 356 : spLeuSerLeuGlnGlyPheThrThrVal : 364 ..|||||||||:!!.!!||||||.!!||| erLeuSerLeuGluSerPheThrAlaVal 1402566 : gtctCTCCTTGGAAAGCTTTACGGCCGTA : 1402594 vulgar: CbirOr129PSE(F) 227 364 . KQ414716.1 1401096 1402594 + 253 M 40 120 S 0 2 5 0 2 I 0 79 3 0 2 S 1 1 M 42 126 S 0 2 5 0 2 I 0 1000 3 0 2 S 1 1 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401097 1402594 253 + . gene_id 3 ; sequence CbirOr129PSE(F) ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401097 1401218 . + . KQ414716.1 exonerate:protein2genome:local exon 1401097 1401218 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401219 1401220 . + . intron_id 1 ; splice_site "AT" KQ414716.1 exonerate:protein2genome:local intron 1401219 1401301 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1401300 1401301 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1401302 1401430 . + . KQ414716.1 exonerate:protein2genome:local exon 1401302 1401430 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401431 1401432 . + . intron_id 2 ; splice_site "GG" KQ414716.1 exonerate:protein2genome:local intron 1401431 1402434 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1402433 1402434 . + . intron_id 1 ; splice_site "TA" KQ414716.1 exonerate:protein2genome:local cds 1402435 1402594 . + . KQ414716.1 exonerate:protein2genome:local exon 1402435 1402594 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401097 1402594 253 + . alignment_id 3 ; Query CbirOr129PSE(F) ; Align 1401097 228 120 ; Align 1401303 269 126 ; Align 1402436 312 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr129PSE(F) Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 199 Query range: 4 -> 84 Target range: 1390538 -> 1390778 5 : SerIleSerThrSerValGluIleGlyLeuArgPheValGlyIleTrpProAspLe : 23 ||||||||| ! !!||||||||||||||||||!!...!||||||||||||! !! SerIleSerArgProValGluIleGlyLeuArgLeuThrGlyIleTrpProGlySe 1390539 : AGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGGAATTTGGCCAGGTTC : 1390593 24 : uSerHisGlyThrLeuIleTrpLeuThrTyrMetThrSerValAlaIleValLeuT : 42 !|||:!!! !! !:!!:!! ! :!!|||!::!!:! ! !:!!.!!:!!|||! ! rSerTyrGluIleIleValArgValThrTrpIleIleLeuMetThrValValGlnI 1390594 : ATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTATGACAGTTGTACAAA : 1390650 43 : yrPheGlnTyrValTyrIlePheAsnHisPheAspValSerAsnIleSerAsnLeu : 60 ||||||||| !||||||.!.!!.|||.!!|||! !||||||:!::!!|||||| lePheGlnTyrArgTyrIleIleLysHisLeuAspGlySerAsnLeuAlaAsnLeu 1390651 : TATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGTAATCTGGCGAACTTA : 1390704 61 : IleAspAlaLeuSerIleThrLeuAlaTyrSerLeuGlyPheLeuLysLeuIleSe : 79 ||||||::!:!!.!!! !|||||| !!||||||||| !!:!:::||||||||| IleAspSerValGlyThrThrLeuProTyrSerLeuLeuTyrValLysLeuIleIl 1390705 : ATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTATgtcaaattaattat : 1390761 80 : rLeuTrpLeuAsnArg : 84 ...||| !!!.||| ePheTrpThrLysArg 1390762 : tttctggaCTAAACGT : 1390778 vulgar: CbirOr129PSE(F) 4 84 . KQ414716.1 1390538 1390778 + 199 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390539 1390778 199 + . gene_id 4 ; sequence CbirOr129PSE(F) ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1390539 1390778 . + . KQ414716.1 exonerate:protein2genome:local exon 1390539 1390778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390539 1390778 199 + . alignment_id 4 ; Query CbirOr129PSE(F) ; Align 1390539 5 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr129PSE(F) Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 311 -> 378 Target range: 1387619 -> 1387955 312 : SerLysSerIleGlyAspAlaAlaTyrGluSerLeuTrpTyrAsnMetThrProAs : 330 |||:!! !!||| !.!.:!:...|||... |||||||||:!!:!:! !||| SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 331 : pLysCysArgIleIleLeuPheValIleLeuArgSerGlnLysArgLeuThrIleT : 349 :!!..!||||||:::|||...:::||||||||||||||||||..!|||! !:!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 350 : hrAlaGlyAsnValMetAspLeuSerLeuGlnGlyPheThrThr >>>> Targe : 364 ||||||||!!. !!:!!:!!||||||||| !.!|||.!!!.. hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt.......... : 1387778 365 : t Intron 1 >>>> ValMetLysAlaSerAlaSerTyrIleSerMetLeuHis : 376 135 bp ::::!:||||||||||||||||||:!!|||:!:|||||| ++MetLeuLysAlaSerAlaSerTyrValSerValLeuHis 1387779 : ...............agatgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTTGCAT : 1387947 377 : AlaMet : 378 |||||| AlaMet 1387948 : GCAATG : 1387955 vulgar: CbirOr129PSE(F) 311 378 . KQ414716.1 1387619 1387955 + 170 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387955 170 + . gene_id 5 ; sequence CbirOr129PSE(F) ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387955 170 + . alignment_id 5 ; Query CbirOr129PSE(F) ; Align 1387620 312 156 ; Align 1387911 364 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr129PSE(F) Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 2 -> 85 Target range: 1385628 -> 1385874 3 : AlaThrSerIleSerThrSerValGluIleGlyLeuArgPheValGlyIleTrpPr : 21 .!!|||! !|||!:! ! !!:!!||| !.!!||||||.!. !!||| !||||| ThrThrIleIleAsnArgProLeuGluTyrSerLeuArgLeuPheGlyAlaTrpPr 1385629 : ACGACTATAATTAATCGTCCATTGGAATATAGCCTCCGTCTATTTGGCGCCTGGCC : 1385683 22 : oAspLeuSerHisGlyThrLeuIleTrpLeuThrTyrMetThrSerValAlaIleV : 40 ||||! !|||:!!..! !|||! ! ! :!!! !!:: !|||! !:!!|||! oAspSerSerTyrSerPheLeuLysSerIleIleTrpSerThrIleMetAlaThrP 1385684 : AGATTCTTCCTATTCATTTCTGAAAAGTATTATTTGGTCGACGATAATGGCAAcgt : 1385740 41 : alLeuTyrPheGlnTyrValTyrIlePheAsnHisPheAspValSerAsnIleSer : 58 ||| ||||||||| !||| !.!!!.!|||.!! |||...::: heLeuMetPheGlnTyrTrpTyrCysIleThrHisIleArg---SerGlyLeuIle 1385741 : ttttaatgtttcaataTTGGTATTGTATTACTCATATTAGA---TCAggtttaatt : 1385791 59 : AsnLeuIleAspAlaLeuSerIleThrLeuAlaTyrSerLeuGlyPheLeuLysLe : 77 :::|||:::|||!.!|||||||||||||||:!! !!||||||! !||||||||||| AspLeuLeuAspGlyLeuSerIleThrLeuSerAsnSerLeuValPheLeuLysLe 1385792 : gatttattgGACGGATTGAGTATTACTTTATCAAATTCACTCGTCTTTCTCAAATT : 1385848 78 : uIleSerLeuTrpLeuAsnArgLys : 85 ||||! !:!!||||||:!!!!!::! uIleIleIleTrpLeuHisSerArg 1385849 : GATTATTATTTGGCTTCATAGTCGG : 1385874 vulgar: CbirOr129PSE(F) 2 85 . KQ414716.1 1385628 1385874 + 150 M 51 153 G 1 0 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1385629 1385874 150 + . gene_id 6 ; sequence CbirOr129PSE(F) ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1385629 1385874 . + . KQ414716.1 exonerate:protein2genome:local exon 1385629 1385874 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local similarity 1385629 1385874 150 + . alignment_id 6 ; Query CbirOr129PSE(F) ; Align 1385629 3 153 ; Align 1385782 55 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr129PSE(F) Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 195 -> 272 Target range: 1387110 -> 1387338 196 : ValLeuHisValThrGlyGlnIleAspIleLeuArgGlnGluLeuLeuMetThrCy : 214 :!!||||||||| !||||||||||||:!!||| !!|||.!.:!! ! ! !! IleLeuHisValGlyGlyGlnIleAspLeuLeuCysGlnAsnMetArgAspIleSe 1387111 : ATATTACATGTTGGTGGTCAGATCGATTTATTGTGTCAAAACATGAGAGACATTTC : 1387165 215 : sAsnAspGluSerSerGluSerSerSerIleIleAlaGlyIleArgLeuLeuIleT : 233 !..!:!!.!...!!.!:!! ! !!..!! !:!:.!! |||!:! !:!!:!!. rArgAsnHisGluLysLysValProGlnLysLeuThr---IleLysAspValValV 1387166 : TCGTAATCATGAGAAGAAAGTACCGCAAAAACTGACA---ATAAAGGATGTCGTTG : 1387219 234 : hrArgHisGlnLysIleIleThrLeuSerAspAsnIleGluGluLeuTyrSerAsp : 251 .!|||||||||::!|||||| !|||||| ! ||||||||| !:!!!:!!!! !! alArgHisGlnArgIleIleArgLeuSerLysAsnIleGluThrValPheThrTyr 1387220 : TTAGGCATCAACGAATTATACGACTGTCTAAAAATATCGAGACAGTTTTTACTTAT : 1387273 252 : IleAlaLeuMetGlnPheLeuSerAsnThrLeuValIleCysCysIleGlyPheTh : 270 |||:!!||| ||||||||||||||| ||||||||||||! !|||.!!|||.. IleSerLeuCysGlnPheLeuSerAsnMetLeuValIleCysPheIleSerPheVa 1387274 : ATATCATTATgccaatttttatcgaatatgcTGGTTATCTGTTTCATAAGCTTCGT : 1387330 271 : rIleIle : 272 !:!::!! lLeuVal 1387331 : TTTGGTA : 1387338 vulgar: CbirOr129PSE(F) 195 272 . KQ414716.1 1387110 1387338 + 143 M 31 93 G 1 0 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387111 1387338 143 + . gene_id 7 ; sequence CbirOr129PSE(F) ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387111 1387338 . + . KQ414716.1 exonerate:protein2genome:local exon 1387111 1387338 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local similarity 1387111 1387338 143 + . alignment_id 7 ; Query CbirOr129PSE(F) ; Align 1387111 196 93 ; Align 1387204 228 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr133 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 410 Query range: 199 -> 382 Target range: 1394161 -> 1395914 200 : IleLeuHisIleGlyGlyGlnIleAspIleLeuArgGluCysLeuLeuThrAlaPh : 218 |||!!!||||||||||||||||||!!:!!:|||!:!:!!..!||| ... IlePheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAsnIleSe 1394162 : ATATTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaatatttc : 1394216 219 : eSerLysAsnMetMetSerThrValAspSerIleThrLeuArgThrLeuIleThrL : 237 |||:!! !! !! !:!!...!!!! !||| !!:!:!!|||||| !! rIleLysAspGluLysHisArgLeuSerArgAsnThrThrLysSerLeuIleHisA 1394217 : tattaaagATGAGAAACACAGATTATCGAGAAACACCACCAAATCATTAATTCACA : 1394273 238 : ysHisGlnGlnIleIleIlePheSerGluAsnIleGluAsnLeuTyrThrTyrIle : 255 :!|||!!.!:!||||||||| !|||!!:::!||||||!:!|||!:!:!!|||||| rgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIle 1394274 : GACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACATT : 1394327 256 : AlaLeuMetLeuPheValSerAspThrProIleIleCysCysLeuGlyPheIleIl : 274 |||||||||! !!:::!!!!!:!!|||! !:!!|||||||||:!!||||||:!!|| AlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGlyPheLeuIl 1394328 : GCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGATTCTTAAT : 1394384 275 : eValThr >>>> Target Intron 1 >>>> SerIleGlyThrThrAspGl : 283 ||||! ! 464 bp :!!.!!..!||| .. eValIle++ ++AlaPheAsnThrAspGlyAs 1394385 : AGTAATTgt.........................agGCATTTAATACAGatggaaa : 1394875 284 : yProAlaIleLeuValArgSerValLeuPheTyrLeuValMetAsnLeuGluAlaP : 302 . ...:::::::::::!|||||||||:!!!.!!!:!.!:!!||||||| nIleLysThrPheIleLysThrLeuLeuPheTyrIleAlaIleThrMetGluAlaP 1394876 : tataaaaacatttataaaaacattACTCTTTTACATCGCTATCACTATGGAAGCAT : 1394932 303 : heIleTyrCysPheAlaGlyGluTyrLeuSerAlaLys >>>> Target Intr : 315 |||||!:!! !||||||||||||||||||||| !||| 353 bp heIlePheSerPheAlaGlyGluTyrLeuSerAsnLys++ 1394933 : TCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAAgt................ : 1394973 316 : on 2 >>>> SerLysMetIleGlyAspAlaAlaTyrAsnSerLeuTrpTyrAsp : 329 ||| ! |||.!!:!!|||||||||!:!|||! !|||||| ! ++SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeu 1394974 : .........agAGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTT : 1395366 330 : ValAlaThrLysLysAsnLeuIleIleLeuPheIleIleLeuArgSerGlnLysAr : 348 :!!! ! !!:!! ! !..! !||||||:!!.!!:!!!!::!!|||||||||!:!|| LeuAspProGlnAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgAr 1395367 : CTGGATCCTCAAGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACG : 1395423 349 : gLeuThrIleThrIleGlyLysValMetAspLeuSerLeuGluArgPheThrSer : 367 ||||||||||||| !|||||| !!|||||||||||||||||| !!|||.!!!:! gLeuThrIleThrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsn+ 1395424 : ATTAACAATCACCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATg : 1395480 368 : >>>> Target Intron 3 >>>> ValValLysAlaSerAlaSerTyrIleS : 376 387 bp ::::!!|||||||||||||||||||||| + ++IleLeuLysAlaSerAlaSerTyrIleS 1395481 : t.........................agatcTTAAAGGCTTCTGCATCGTACATAT : 1395894 377 : erValLeuLeuAlaMetTyr : 382 ||||||||! !||||||||| erValLeuTyrAlaMetTyr 1395895 : CTGTACTGTATGCGATGTAC : 1395914 vulgar: CbirOr133 199 382 . KQ414716.1 1394161 1395914 + 410 M 77 231 5 0 2 I 0 460 3 0 2 M 38 114 5 0 2 I 0 349 3 0 2 M 52 156 5 0 2 I 0 383 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394162 1395914 410 + . gene_id 1 ; sequence CbirOr133 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394162 1394392 . + . KQ414716.1 exonerate:protein2genome:local exon 1394162 1394392 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394393 1394394 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394393 1394856 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394855 1394856 . + . intron_id 0 ; splice_site "aG" KQ414716.1 exonerate:protein2genome:local cds 1394857 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394857 1394970 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394971 1394972 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394971 1395323 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1395322 1395323 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1395324 1395479 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395479 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1395480 1395481 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1395480 1395866 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1395865 1395866 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1395867 1395914 . + . KQ414716.1 exonerate:protein2genome:local exon 1395867 1395914 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394162 1395914 410 + . alignment_id 1 ; Query CbirOr133 ; Align 1394162 200 231 ; Align 1394857 277 114 ; Align 1395324 315 156 ; Align 1395867 367 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr133 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 382 Query range: 230 -> 381 Target range: 1408291 -> 1409528 231 : LeuArgThrLeuIleThrLysHisGlnGlnIleIleIlePheSerGluAsnIleGl : 249 |||||| !!!!|||!:!!:!|||||||||||||||||||||:!!|||!..||||| LeuArgPhePheIleSerArgHisGlnGlnIleIleIlePheAlaGluArgIleGl 1408292 : CTGAGATTCTTCATCAGCAGACATCAACAGATCATCATATTTGCAGAGAGAATAGA : 1408346 250 : uAsnLeuTyrThrTyrIleAlaLeuMetLeuPheValSerAspThrProIleIleC : 268 |!!.|||!:!||||||:!!||||||! ! !.!!:!!|||:!!|||! !|||! !| uLysLeuPheThrTyrLeuAlaLeuSerGlnLeuLeuSerAsnThrLeuIleThrC 1408347 : AAAACTGTTTACGTATCTAGCACTTAGTCAACTTCTCTCGAATACCCTAATTACTT : 1408403 269 : ysCysLeuGlyPheIleIleValThr >>>> Target Intron 1 >>>> S : 277 |||||:!!|||!:!||||||!.! ! 92 bp : ysCysValGlyTyrIleIleAlaPhe++ ++A 1408404 : GCTGCGTGGGTTATATTATCGCATTTgt.........................agG : 1408522 278 : erIleGlyThrThrAspGlyProAlaIleLeuValArgSerValLeuPheTyrLeu : 295 !!:!! !!.!!.!:!!||| ! !!!:|||:!!!:!! !|||:!!!:!|||:!! laLeuGlnAsnAsnAsnGlyPheLysMetLeuIleLysPheValValTyrTyrMet 1408523 : CACTACAAAATAATAATGGATTTAAAATGTTGATCAAATTTGTTGTATATTACATG : 1408576 296 : ValMetAsnLeuGluAlaPheIleTyrCysPheAlaGlyGluTyrLeuSerAlaLy : 314 !.!:!! !! !||||||||||||||||||||||||||||||||||||!:! !|| AlaValCysSerGluAlaPheIleTyrCysPheAlaGlyGluTyrLeuAsnIleLy 1408577 : GCTGTGTGCTCAGAAGCGTTCATATACTGCTTTGCTGGAGAGTACCTTAATATCAA : 1408633 315 : s >>>> Target Intron 2 >>>> SerLysMetIleGlyAspAlaAlaTy : 323 | 414 bp ||||||:::|||||||||.!!||||| s++ ++SerLysLeuIleGlyAspThrAlaTy 1408634 : Ggt.........................agagtaaactgattggagACACGGCGTA : 1409074 324 : rAsnSerLeuTrpTyrAspValAlaThrLysLysAsnLeuIleIleLeuPheIleI : 342 |.!.! !|||||||||:!!:!! !:!!|||:!!!:!! !:!!!!:|||.!!:!!| rGluPheLeuTrpTyrAsnMetHisSerLysGluSerArgLeuMetLeuLeuValI 1409075 : TGAATTTCTTTGGTATAATATGCATTCGAAGGAAAGCCGACTTATGTTGCTTGTAA : 1409131 343 : leLeuArgSerGlnLysArgLeuThrIleThrIleGlyLysValMetAspLeuSer : 360 ||||||||||||||||| !!!!!|||...|||...|||||| ...|||||| leLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysPheAlaSerLeuSer 1409132 : TACTACGATCACAGAAAGGATTTACtttcacttttggaaaatttgcaagtCTTTCC : 1409185 361 : LeuGluArgPheThrSer >>>> Target Intron 3 >>>> ValValLys : 369 :!!|||!!!|||.!!.!! 278 bp ::::!!||| MetGluSerPheAlaGly++ ++IleMetLys 1409186 : ATGGAAAGTTTTGCAGGCgt.........................agattATGAAA : 1409490 370 : AlaSerAlaSerTyrIleSerValLeuLeuAlaMet : 381 |||||||||||||||||||||||||||||||||||| AlaSerAlaSerTyrIleSerValLeuLeuAlaMet 1409491 : GCTTCTGCATCGTATATATCCGTATTGCTCGCAATG : 1409528 vulgar: CbirOr133 230 381 . KQ414716.1 1408291 1409528 + 382 M 46 138 5 0 2 I 0 88 3 0 2 M 38 114 5 0 2 I 0 410 3 0 2 M 52 156 5 0 2 I 0 274 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408292 1409528 382 + . gene_id 2 ; sequence CbirOr133 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408292 1408429 . + . KQ414716.1 exonerate:protein2genome:local exon 1408292 1408429 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408430 1408431 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408430 1408521 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1408520 1408521 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1408522 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408522 1408635 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408636 1408637 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408636 1409049 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1409048 1409049 . + . intron_id 1 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409050 1409205 . + . KQ414716.1 exonerate:protein2genome:local exon 1409050 1409205 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1409206 1409207 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1409206 1409483 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1409482 1409483 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409484 1409528 . + . KQ414716.1 exonerate:protein2genome:local exon 1409484 1409528 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408292 1409528 382 + . alignment_id 2 ; Query CbirOr133 ; Align 1408292 231 138 ; Align 1408522 277 114 ; Align 1409050 315 156 ; Align 1409484 367 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr133 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 273 -> 367 Target range: 1401308 -> 1402594 274 : IleValThrSerIleGlyThrThrAspGlyProAlaIleLeuValArgSerValLe : 292 |||::: :!!:!! !! ! !:!!||| ! !!:!:|||:!!!::|||:::|| IleLeuGlnAlaValHisIleAspAsnGlyValProLeuLeuLeuLysSerLeuLe 1401309 : atattacaggCAGTACATATCGACAATGGAGTTCCTCTGTTACTCAaatctctttt : 1401363 293 : uPheTyrLeuValMetAsnLeuGluAlaPheIleTyrCysPheAlaGlyGluTyrL : 311 |||||||:::|||!!: !||||||||||||||||||||||||!.!|||||||||| uPheTyrValValIleCysLeuGluAlaPheIleTyrCysPheValGlyGluTyrL 1401364 : attttatgtgGTTATTTGTTTAGAAGCGTTTATATACTGCTTTGTCGGAGAATATC : 1401420 312 : euSerAla{Ly} >>>> Target Intron 1 >>>> {s}SerLysMetIle : 318 ||||| !{||} 1004 bp {|}|||:!!:!:||| euSerIle{Ly}+- --{s}SerGlnLeuIle 1401421 : TCAGTATC{AA}gg.........................ta{G}AGCCAACTAATC : 1402445 319 : GlyAspAlaAlaTyrAsnSerLeuTrpTyrAspValAlaThrLysLysAsnLeuIl : 337 |||:!!.!!||||||.!.! !||||||||||||:!! !:!!! :!!!:!! !:! GlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSerGlnLe 1402446 : GGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAGCCAACT : 1402502 338 : eIleLeuPheIleIleLeuArgSerGlnLysArgLeuThrIleThrIleGlyLysV : 356 !:!!:!! !:!!|||||||||||||||||| !!!!!|||...|||...|||||| uLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysP 1402503 : TCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACGTttacttttggaaaat : 1402559 357 : alMetAspLeuSerLeuGluArgPheThrSerVal : 367 ...||||||||||||!!!||||||:!!||| heSerSerLeuSerLeuGluSerPheThrAlaVal 1402560 : tttcaagtctCTCCTTGGAAAGCTTTACGGCCGTA : 1402594 vulgar: CbirOr133 273 367 . KQ414716.1 1401308 1402594 + 204 M 40 120 S 0 2 5 0 2 I 0 1000 3 0 2 S 1 1 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401309 1402594 204 + . gene_id 3 ; sequence CbirOr133 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401309 1401430 . + . KQ414716.1 exonerate:protein2genome:local exon 1401309 1401430 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401431 1401432 . + . intron_id 1 ; splice_site "GG" KQ414716.1 exonerate:protein2genome:local intron 1401431 1402434 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1402433 1402434 . + . intron_id 0 ; splice_site "TA" KQ414716.1 exonerate:protein2genome:local cds 1402435 1402594 . + . KQ414716.1 exonerate:protein2genome:local exon 1402435 1402594 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401309 1402594 204 + . alignment_id 3 ; Query CbirOr133 ; Align 1401309 274 120 ; Align 1402436 315 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr133 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 192 Query range: 3 -> 84 Target range: 1390535 -> 1390778 4 : SerThrValSerArgValValLysIleGlyLeuArgAlaCysGlyIleTrpProTy : 22 !.!!:!:!!|||||| !|||:!!|||||||||||| ! !|||||||||||| LysSerIleSerArgProValGluIleGlyLeuArgLeuThrGlyIleTrpProGl 1390536 : AAAAGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGGAATTTGGCCAGG : 1390590 23 : rLeuProThrThrThrLeuTyrArgPhePheTrpIleValMetLeuGlyIleAlaG : 41 !! ! !! ! !! !:!! !||| ! !||||||:!!:!::!! !:!!!.!| ySerSerTyrGluIleIleValArgValThrTrpIleIleLeuMetThrValValG 1390591 : TTCATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTATGACAGTTGTAC : 1390647 42 : lnIlePheGlnTyrGlnTyrValValIleHisTyrAsnThrAspAsnPheSerHis : 59 ||||||||||||||!:!|||:!!:!!! ||| !:!! !..!|||.!.:!!:!! lnIlePheGlnTyrArgTyrIleIleLysHisLeuAspGlySerAsnLeuAlaAsn 1390648 : AAATATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGTAATCTGGCGAAC : 1390701 60 : PheMetAspGlyValSerSerAlaMetThrTyrSerLeuLeuPheValLysLeuTh : 78 !!.!!:|||.!!|||.!!!!!.!!:!: !!||||||||||||!:!||||||||| LeuIleAspSerValGlyThrThrLeuProTyrSerLeuLeuTyrValLysLeuIl 1390702 : TTAATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTATgtcaaattaat : 1390758 79 : rIleLeuTrpAlaAsnGln : 84 |||...|||.!!!!.!:: eIlePheTrpThrLysArg 1390759 : tattttctggaCTAAACGT : 1390778 vulgar: CbirOr133 3 84 . KQ414716.1 1390535 1390778 + 192 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390536 1390778 192 + . gene_id 4 ; sequence CbirOr133 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1390536 1390778 . + . KQ414716.1 exonerate:protein2genome:local exon 1390536 1390778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390536 1390778 192 + . alignment_id 4 ; Query CbirOr133 ; Align 1390536 4 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr133 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 155 -> 276 Target range: 1386978 -> 1387341 156 : IleLeuLysMetLysLeuProPheThrValSerThrSerProIleTyrValLeuIl : 174 |||||||||::: ||| ::: ::: ...||| ::: IleLeuLysIleTyrLeuLysTyrIleHisThrGluIleThrPheTyrTyrIleTy 1386979 : atacttaaaatatatttaaaatacattcacactgaaataactttttactatattta : 1387033 175 : eThrIleLeuGlnPhePheTyrLeuAlaIleTyrGlyCysGlyIleSerMetValA : 193 |||:::::: ! !!!!! !! !||| ::: ::::!! rPheIleIleArgHisGlnAspPheAsnThrTyrLeuIlePheLeuLeuIleIle* 1387034 : ttttataattaggCATCAAGATTTTAACACTTatctaatatttttgttaatcaTTT : 1387090 194 : snSerLeuIleValThrLeuIleLeuHisIleGlyGlyGlnIleAspIleLeuArg : 211 !.! ! !:!! !! !|||||||||:!!|||||||||||||||:!!||| !! **LysAlaSerLeuLeu***IleLeuHisValGlyGlyGlnIleAspLeuLeuCys 1387091 : GAAAAGCTTCACTGTTGTAGATATTACATGTTGGTGGTCAGATCGATTTATTGTGT : 1387144 212 : GluCysLeuLeuThrAlaPheSerLysAsnMetMetSerThrValAspSerIleTh : 230 :!! !:!! ! ! !! ! !!!!.:!! !! !!.!..! !.!.!.!:!:|| GlnAsnMetArgAspIleSerArgAsnHisGluLysLysValProGlnLysLeuTh 1387145 : CAAAACATGAGAGACATTTCTCGTAATCATGAGAAGAAAGTACCGCAAAAACTGAC : 1387201 231 : rLeuArgThrLeuIleThrLysHisGlnGlnIleIleIlePheSerGluAsnIleG : 249 |:!!!:! !:!!:!!..!!:!||||||!:!|||||| !.!.|||:!!||||||| rIleLysAspValValValArgHisGlnArgIleIleArgLeuSerLysAsnIleG 1387202 : AATAAAGGATGTCGTTGTTAGGCATCAACGAATTATACGACTGTCTAAAAATATCG : 1387258 250 : luAsnLeuTyrThrTyrIleAlaLeuMetLeuPheValSerAspThrProIleIle : 267 ||!..:!!!:!|||||||||:!!||| |||:::|||::: !:!!||| luThrValPheThrTyrIleSerLeuCysGlnPheLeuSerAsnMetLeuValIle 1387259 : AGACAGTTTTTACTTATATATCATTATgccaatttttatcgaatatgcTGGTTATC : 1387312 268 : CysCysLeuGlyPheIleIleValThr : 276 |||! !:!!.!!|||:!!:!:|||||| CysPheIleSerPheValLeuValThr 1387313 : TGTTTCATAAGCTTCGTTTTGGTAACC : 1387341 vulgar: CbirOr133 155 276 . KQ414716.1 1386978 1387341 + 165 M 121 363 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1386979 1387341 165 + . gene_id 5 ; sequence CbirOr133 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1386979 1387341 . + . KQ414716.1 exonerate:protein2genome:local exon 1386979 1387341 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1386979 1387341 165 + . alignment_id 5 ; Query CbirOr133 ; Align 1386979 156 363 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr133 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 314 -> 381 Target range: 1387619 -> 1387955 315 : SerLysMetIleGlyAspAlaAlaTyrAsnSerLeuTrpTyrAspValAlaThrLy : 333 |||:!! ||| !.!.:!:...|||||| ||||||||||||:!! ! !!:: SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 334 : sLysAsnLeuIleIleLeuPheIleIleLeuArgSerGlnLysArgLeuThrIleT : 352 !:!! !! |||:::|||...|||||||||||||||||||||..!|||! !:!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 353 : hrIleGlyLysValMetAspLeuSerLeuGluArgPheThrSer >>>> Targe : 367 || |||||| !!:!!:!!|||||||||! !|||.!!!:: hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt.......... : 1387778 368 : t Intron 1 >>>> ValValLysAlaSerAlaSerTyrIleSerValLeuLeu : 379 135 bp ::::!!||||||||||||||||||:!!|||||||||! ! ++MetLeuLysAlaSerAlaSerTyrValSerValLeuHis 1387779 : ...............agatgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTTGCAT : 1387947 380 : AlaMet : 381 |||||| AlaMet 1387948 : GCAATG : 1387955 vulgar: CbirOr133 314 381 . KQ414716.1 1387619 1387955 + 159 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387955 159 + . gene_id 6 ; sequence CbirOr133 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387955 159 + . alignment_id 6 ; Query CbirOr133 ; Align 1387620 315 156 ; Align 1387911 367 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr133 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 222 -> 275 Target range: 1401072 -> 1401231 223 : MetSerThrValAspSerIleThrLeuArgThrLeuIleThrLysHisGlnGlnIl : 241 :!:||| ! !|||... :::::: ...|||..!!:!||||||:!!|| ValSerPheLysAspGlyLysGlnIleLysPhePheIleAsnArgHisGlnGluIl 1401073 : GTTTCCTTCAAAGACggaaaacaaataaaattcttcattaACAGACATCAGGAAAT : 1401127 242 : eIleIlePheSerGluAsnIleGluAsnLeuTyrThrTyrIleAlaLeuMetLeuP : 260 ||||:!!|||:!!|||!..||||||!!.|||!:!||||||!!:||||||! ! !. eIleValPheAlaGluArgIleGluLysLeuPheThrTyrMetAlaLeuSerGlnL 1401128 : TATTGTTTTTGCAGAAAGAATTGAGAAACTTTTTACATACATGGCTCTCAGTCAAC : 1401184 261 : heValSerAspThrProIleIleCysCysLeuGlyPheIleIleVal : 275 !!||||||:!!||| !||||||||||||:!!||||||:!!:!!||| euValSerAsnThrIleIleIleCysCysValGlyPheLeuValVal 1401185 : TTGTGTCCAATACGATAATTATATGTTGCGTAGGATTTCTCGTTGTA : 1401231 vulgar: CbirOr133 222 275 . KQ414716.1 1401072 1401231 + 142 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401073 1401231 142 + . gene_id 7 ; sequence CbirOr133 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1401073 1401231 . + . KQ414716.1 exonerate:protein2genome:local exon 1401073 1401231 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401073 1401231 142 + . alignment_id 7 ; Query CbirOr133 ; Align 1401073 223 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr133 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 143 -> 200 Target range: 1391851 -> 1392022 144 : AsnIleGlnArgIleAsnValSerAlaArgGluTyrIleLeuLysMetLysLeuPr : 162 ||| ! ..! !:!!:!!!.!:!!|||||| !:!::!!|||||| ! ||||| AsnAspGlyGluTyrAspLeuLysSerArgGluLeuLeuMetLysMetAspLeuPr 1391852 : AACGACGGCGAATATGATTTAAAGTCTCGAGAACTTTTGATGAAAATGGACCTCCC : 1391906 163 : oPheThrValSerThrSerProIleTyrValLeuIleThrIleLeuGlnPhePheT : 181 ||||.!! !! !! !!!!|||! ||| !! !:!! !:!!:!!||||||.!! oPheAlaTyrTyrLysThrProThrTyrGlnTrpValPheValValGlnPheLeuG 1391907 : GTTTGCGTATTACAAAACACCGACGTATCAATGGGTATTTGTTGTACAATTTCTTC : 1391963 182 : yrLeuAlaIleTyrGlyCysGlyIleSerMetValAsnSerLeuIleValThrLeu : 199 ! ||| !||| !!!.!! !!.!|||.!!|||:!!:!!:!!||||||:!!|||||| lnLeuLeuIleAsnAlaSerAlaIleGlyMetLeuAspAlaLeuIleIleThrLeu 1391964 : AGCTGTTGATAAATGCATCTGCTATTGGTATGTTAGATGCTTTGATAATTACGTTG : 1392017 200 : Ile : 200 :!! Val 1392018 : GTA : 1392022 vulgar: CbirOr133 143 200 . KQ414716.1 1391851 1392022 + 102 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1391852 1392022 102 + . gene_id 8 ; sequence CbirOr133 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1391852 1392022 . + . KQ414716.1 exonerate:protein2genome:local exon 1391852 1392022 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1391852 1392022 102 + . alignment_id 8 ; Query CbirOr133 ; Align 1391852 144 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr132 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 391 Query range: 202 -> 385 Target range: 1394161 -> 1395914 203 : ValLeuHisValGlyGlyGlnIleAspIleLeuArgGlyTrpLeuLeuThrAlaPh : 221 :!!!!!|||:!!||||||||||||!!:!!:|||!:! ! ||| ... IlePheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAsnIleSe 1394162 : ATATTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaatatttc : 1394216 222 : eSerLysAsnSerAlaGlnSerMetSerGluIleThrLeuArgSerLeuIleThrL : 240 |||:!!..! !!!.!!!:!:|||..!! !||| !!:!||||||||| !! rIleLysAspGluLysHisArgLeuSerArgAsnThrThrLysSerLeuIleHisA 1394217 : tattaaagATGAGAAACACAGATTATCGAGAAACACCACCAAATCATTAATTCACA : 1394273 241 : ysHisGlnGlnIleIleLeuPheSerGluAsnIleGluAspLeuTyrThrTyrVal : 258 :!|||!!.!:!||||||:!! !|||!!:::!||||||..!|||!:!:!!|||:!! rgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIle 1394274 : GACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACATT : 1394327 259 : AlaLeuMetIleLeuLeuSerAspThrPheIleIleCysCysLeuGlyTyrValVa : 277 ||||||||| ! !|||!!!:!!|||.!!:!!|||||||||:!!|||!:!:!!:! AlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGlyPheLeuIl 1394328 : GCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGATTCTTAAT : 1394384 278 : lAlaThr >>>> Target Intron 1 >>>> SerLeuAspThrProAsnAl : 286 !!.!! ! 464 bp :!!!!!:!!||| ... eValIle++ ++AlaPheAsnThrAspGlyAs 1394385 : AGTAATTgt.........................agGCATTTAATACAGatggaaa : 1394875 287 : aAlaAlaIleLeuMetLysSerLeuValPheTyrIleThrIleAsnLeuGluValP : 305 ...:::|||:::|||:!!|||||||||.!!|||!.!:!!|||!.!| nIleLysThrPheIleLysThrLeuLeuPheTyrIleAlaIleThrMetGluAlaP 1394876 : tataaaaacatttataaaaacattACTCTTTTACATCGCTATCACTATGGAAGCAT : 1394932 306 : heIleTyrCysLeuSerGlyGluTyrLeuSerAlaLys >>>> Target Intr : 318 |||||!:!! !!!!:!!||||||||||||||| !||| 353 bp heIlePheSerPheAlaGlyGluTyrLeuSerAsnLys++ 1394933 : TCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAAgt................ : 1394973 319 : on 2 >>>> SerLysMetIleGlyAsnAlaAlaTyrAsnAlaLeuTrpTyrAsp : 332 ||| ! |||.!!||||||||||||!:!:!!! !|||||| ! ++SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeu 1394974 : .........agAGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTT : 1395366 333 : IleProThrLysGlnSerArgIleValSerPheIleIleLeuArgSerGlnLysLe : 351 :!: ! !!:!!.!.!!!!.!|||:!!! !.!!:!!!!::!!|||||||||!:!! LeuAspProGlnAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgAr 1395367 : CTGGATCCTCAAGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACG : 1395423 352 : uLeuThrIleThrSerGlyLysIleMetAspLeuSerLeuGluArgPheThrSer : 370 !||||||||||||:!!||||||.!!|||||||||||||||||| !!|||.!!!:! gLeuThrIleThrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsn+ 1395424 : ATTAACAATCACCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATg : 1395480 371 : >>>> Target Intron 3 >>>> ValValLysAlaSerAlaSerTyrLeuS : 379 387 bp ::::!!||||||||||||||||||:!!| + ++IleLeuLysAlaSerAlaSerTyrIleS 1395481 : t.........................agatcTTAAAGGCTTCTGCATCGTACATAT : 1395894 380 : erMetLeuLeuAlaMetTyr : 385 ||:!:|||! !||||||||| erValLeuTyrAlaMetTyr 1395895 : CTGTACTGTATGCGATGTAC : 1395914 vulgar: CbirOr132 202 385 . KQ414716.1 1394161 1395914 + 391 M 77 231 5 0 2 I 0 460 3 0 2 M 38 114 5 0 2 I 0 349 3 0 2 M 52 156 5 0 2 I 0 383 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394162 1395914 391 + . gene_id 1 ; sequence CbirOr132 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394162 1394392 . + . KQ414716.1 exonerate:protein2genome:local exon 1394162 1394392 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394393 1394394 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394393 1394856 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394855 1394856 . + . intron_id 0 ; splice_site "aG" KQ414716.1 exonerate:protein2genome:local cds 1394857 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394857 1394970 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394971 1394972 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394971 1395323 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1395322 1395323 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1395324 1395479 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395479 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1395480 1395481 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1395480 1395866 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1395865 1395866 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1395867 1395914 . + . KQ414716.1 exonerate:protein2genome:local exon 1395867 1395914 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394162 1395914 391 + . alignment_id 1 ; Query CbirOr132 ; Align 1394162 203 231 ; Align 1394857 280 114 ; Align 1395324 318 156 ; Align 1395867 370 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr132 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 377 Query range: 229 -> 384 Target range: 1408279 -> 1409528 230 : SerGluIleThrLeuArgSerLeuIleThrLysHisGlnGlnIleIleLeuPheSe : 248 !:!:!!! ! !||||||! !!!!|||!:!!:!|||||||||||||||:!!|||:! AsnLysThrGlnLeuArgPhePheIleSerArgHisGlnGlnIleIleIlePheAl 1408280 : AATAAAACTCAACTGAGATTCTTCATCAGCAGACATCAACAGATCATCATATTTGC : 1408334 249 : rGluAsnIleGluAspLeuTyrThrTyrValAlaLeuMetIleLeuLeuSerAspT : 267 !|||!..|||||| ! |||!:!||||||:!!||||||! !|||||||||:!!| aGluArgIleGluLysLeuPheThrTyrLeuAlaLeuSerGlnLeuLeuSerAsnT 1408335 : AGAGAGAATAGAAAAACTGTTTACGTATCTAGCACTTAGTCAACTTCTCTCGAATA : 1408391 268 : hrPheIleIleCysCysLeuGlyTyrValValAlaThr >>>> Target Intr : 280 ||.!.|||! !||||||:!!||||||:!!:!!||| ! 92 bp hrLeuIleThrCysCysValGlyTyrIleIleAlaPhe++ 1408392 : CCCTAATTACTTGCTGCGTGGGTTATATTATCGCATTTgt................ : 1408432 281 : on 1 >>>> SerLeuAspThrProAsnAlaAlaAlaIleLeuMetLysSerLeu : 294 :!!|||.!.!.! !|||!.! ! !!!:|||!!:|||! !:!! ++AlaLeuGlnAsnAsnAsnGlyPheLysMetLeuIleLysPheVal 1408433 : .........agGCACTACAAAATAATAATGGATTTAAAATGTTGATCAAATTTGTT : 1408564 295 : ValPheTyrIleThrIleAsnLeuGluValPheIleTyrCysLeuSerGlyGluTy : 313 |||!:!|||!!:.!!:!: !! !|||!.!||||||||||||!!!:!!|||||||| ValTyrTyrMetAlaValCysSerGluAlaPheIleTyrCysPheAlaGlyGluTy 1408565 : GTATATTACATGGCTGTGTGCTCAGAAGCGTTCATATACTGCTTTGCTGGAGAGTA : 1408621 314 : rLeuSerAlaLys >>>> Target Intron 2 >>>> SerLysMetIleGl : 322 ||||!:! !||| 414 bp ||||||:::||||| rLeuAsnIleLys++ ++SerLysLeuIleGl 1408622 : CCTTAATATCAAGgt.........................agagtaaactgattgg : 1409062 323 : yAsnAlaAlaTyrAsnAlaLeuTrpTyrAspIleProThrLysGlnSerArgIleV : 341 |:!!.!!||||||.!. !|||||||||:!!!!:! !:!!|||:!!||||||:!!: yAspThrAlaTyrGluPheLeuTrpTyrAsnMetHisSerLysGluSerArgLeuM 1409063 : agACACGGCGTATGAATTTCTTTGGTATAATATGCATTCGAAGGAAAGCCGACTTA : 1409119 342 : alSerPheIleIleLeuArgSerGlnLysLeuLeuThrIleThrSerGlyLysIle : 359 !!! !.!!:!!|||||||||||||||||| !!!!|||...||| ||||||... etLeuLeuValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysPhe 1409120 : TGTTGCTTGTAATACTACGATCACAGAAAGGATTTACtttcacttttggaaaattt : 1409173 360 : MetAspLeuSerLeuGluArgPheThrSer >>>> Target Intron 3 >>> : 370 ...||||||:!!|||!!!|||.!!.!! 278 bp AlaSerLeuSerMetGluSerPheAlaGly++ 1409174 : gcaagtCTTTCCATGGAAAGTTTTGCAGGCgt........................ : 1409208 371 : > ValValLysAlaSerAlaSerTyrLeuSerMetLeuLeuAlaMet : 384 ::::!!||||||||||||||||||:!!|||:!:|||||||||||| ++IleMetLysAlaSerAlaSerTyrIleSerValLeuLeuAlaMet 1409209 : .agattATGAAAGCTTCTGCATCGTATATATCCGTATTGCTCGCAATG : 1409528 vulgar: CbirOr132 229 384 . KQ414716.1 1408279 1409528 + 377 M 50 150 5 0 2 I 0 88 3 0 2 M 38 114 5 0 2 I 0 410 3 0 2 M 52 156 5 0 2 I 0 274 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408280 1409528 377 + . gene_id 2 ; sequence CbirOr132 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408280 1408429 . + . KQ414716.1 exonerate:protein2genome:local exon 1408280 1408429 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408430 1408431 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408430 1408521 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1408520 1408521 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1408522 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408522 1408635 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408636 1408637 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408636 1409049 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1409048 1409049 . + . intron_id 1 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409050 1409205 . + . KQ414716.1 exonerate:protein2genome:local exon 1409050 1409205 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1409206 1409207 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1409206 1409483 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1409482 1409483 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409484 1409528 . + . KQ414716.1 exonerate:protein2genome:local exon 1409484 1409528 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408280 1409528 377 + . alignment_id 2 ; Query CbirOr132 ; Align 1408280 230 150 ; Align 1408522 280 114 ; Align 1409050 318 156 ; Align 1409484 370 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr132 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 302 Query range: 4 -> 203 Target range: 1390538 -> 1392022 5 : ThrLeuSerArgLeuIleArgIleGlyLeuHisIlePheGlyValTrpProTyrVa : 23 !:!:!!||||||! !:!:..!|||||||||...:!! !|||:!!|||||| ! SerIleSerArgProValGluIleGlyLeuArgLeuThrGlyIleTrpProGlySe 1390539 : AGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGGAATTTGGCCAGGTTC : 1390593 24 : lSerSerThrValLeuPheArgLeuTyrTrpIleValMetLeuSerThrAlaGlnV : 42 !|||! ! !:!!:!! !!|||:!! !||||||:!!:!::!!!!!..!!.!|||: rSerTyrGluIleIleValArgValThrTrpIleIleLeuMetThrValValGlnI 1390594 : ATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTATGACAGTTGTACAAA : 1390650 43 : alPheGlnTyrArgTyrValValValAsnIleHisMetAspAspPheSerGlnPhe : 60 !!|||||||||||||||:!!:!! !:!!:!! !! ..!:!!.!.:!!.!.!!. lePheGlnTyrArgTyrIleIleLysHisLeuAspGlySerAsnLeuAlaAsnLeu 1390651 : TATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGTAATCTGGCGAACTTA : 1390704 61 : MetAspGlyValSerSerAlaMetAlaSerSerLeuLeuPheIleLysLeuIleIl : 79 !!:|||.!!|||.!!!!!.!!:!: !!! !|||||||||!:!:::||||||||||| IleAspSerValGlyThrThrLeuProTyrSerLeuLeuTyrValLysLeuIleIl 1390705 : ATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTATgtcaaattaattat : 1390761 80 : eLeuTrpIleAsnGln{Ar} >>>> Target Intron 1 >>>> {g}IleP : 87 |...||| !!!.!::{ !} 884 bp {!}|||| ePheTrpThrLysArg{Gl}++ ++{y}IleP 1390762 : tttctggaCTAAACGT{GG}gt.........................ag{a}atat : 1391669 88 : hePheGluLeuLeuGlnMetMetAlaGluAspTrpGlnAsnTyrIleSerAsnHis : 105 || ...:::||| ! |||:!!.!.||||||...|||! ! !|||!.. ! heGluAsnMetLeuValGlyMetSerAsnAspTrpSerAsnSerSerSerThrLys 1391670 : tcgaaaatatgtTAGTGGGAATGTCTAACGATTGGAGTAATTCTTCATCAACGAAA : 1391723 106 : ThrAsnLeuArgLeuMetThrAsnIleAlaAspLeuAlaArgArgMetSerArgTr : 124 !:!!:!!!.! !|||! !!:!! !|||!!:|||||| !||| |||!:! PheAspIleAsnAlaMetIleSerLysAlaGluLeuAlaTyrArgTyrSerLysVa 1391724 : TTTGACATAAACGCCATGATAAGTAAAGCTGAACTTGCGTATCGTTATTCGAAGGT : 1391780 125 : pIleValGlyMetGlnMetIleAlaValValThrTyrIleSerGlyValLeuAlaA : 143 |||:!!.!!! ! ||||||||| !!.!!|||! !|||! ! !!!!!! ! lIleMetSerThrTyrAlaIleAlaValPheAlaTyrThrSerValPhePheGluP 1391781 : AATTATGAGCACATATGCTATTGCCGTTTTCGCTTATACCAGCGTGTTTTTCGAGT : 1391837 144 : laAsnValAsnSerSerGlu<->GluValLysProTyrAlaArgGluLeuIleLeu : 160 !! !:!!..!!:!!!: ||| ! ! ! ! :!!|||||||||:!::!! heMetArgHisAspAsnAspGlyGluTyrAspLeuLysSerArgGluLeuLeuMet 1391838 : TTATGCGTCACGACAACGACGGCGAATATGATTTAAAGTCTCGAGAACTTTTGATG : 1391891 161 : LysMetAspPheProPheAsnIleSerThrAsnPheIleTyrMetValIleSerVa : 179 |||||||||.!!|||||| !! !! !!.. ! |||... !:!!! !|| LysMetAspLeuProPheAlaTyrTyrLysThrProThrTyrGlnTrpValPheVa 1391892 : AAAATGGACCTCCCGTTTGCGTATTACAAAACACCGACGTATCAATGGGTATTTGT : 1391948 180 : lValGlnSerTyrHisLeuThrLeuValAlaTyrGlyIleThrIleIleAsnSerL : 198 |||||||! ! !!!.||| !:!! !|||! !!.!||| !!!::!!:!!:!!| lValGlnPheLeuGlnLeuLeuIleAsnAlaSerAlaIleGlyMetLeuAspAlaL 1391949 : TGTACAATTTCTTCAGCTGTTGATAAATGCATCTGCTATTGGTATGTTAGATGCTT : 1392005 199 : euLeuValThrLeuVal : 203 ||:!!:!!||||||||| euIleIleThrLeuVal 1392006 : TGATAATTACGTTGGTA : 1392022 vulgar: CbirOr132 4 203 . KQ414716.1 1390538 1392022 + 302 M 80 240 S 0 2 5 0 2 I 0 880 3 0 2 S 1 1 M 64 192 G 0 3 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390539 1392022 302 + . gene_id 3 ; sequence CbirOr132 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1390539 1390780 . + . KQ414716.1 exonerate:protein2genome:local exon 1390539 1390780 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1390781 1390782 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1390781 1391664 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1391663 1391664 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1391665 1392022 . + . KQ414716.1 exonerate:protein2genome:local exon 1391665 1392022 . + . insertions 3 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390539 1392022 302 + . alignment_id 3 ; Query CbirOr132 ; Align 1390539 5 240 ; Align 1391666 86 192 ; Align 1391861 150 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr132 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 231 Query range: 233 -> 370 Target range: 1401096 -> 1402594 234 : LeuArgSerLeuIleThrLysHisGlnGlnIleIleLeuPheSerGluAsnIleGl : 252 :::::: ...|||..!!:!||||||:!!||||||:!!|||:!!|||!..||||| IleLysPhePheIleAsnArgHisGlnGluIleIleValPheAlaGluArgIleGl 1401097 : ataaaattcttcattaACAGACATCAGGAAATTATTGTTTTTGCAGAAAGAATTGA : 1401151 253 : uAspLeuTyrThrTyrValAla >>>> Target Intron 1 >>>> LeuMe : 261 | ! |||!:!||||||:!!||| 83 bp |||:! uLysLeuPheThrTyrMetAla-+ +-LeuLe 1401152 : GAAACTTTTTACATACATGGCTct.........................aaCTCTT : 1401261 262 : tIleLeuLeuSerAspThrPheIleIleCysCysLeuGlyTyrValValAlaThrS : 280 : !:!! !! ! ! !|||.!!:!: ! ! ::: : uSerIleThrMetCysTyrPhePheValIleLeuCysArgLys***IleLeuGlnA 1401262 : ATCCATAACGATGTGTTATTTTTTCGTGATATTGTGtaggaaataaatattacagg : 1401318 281 : erLeuAspThrProAsnAlaAlaAlaIleLeuMetLysSerLeuValPheTyrIle : 298 !!:!! !!! ! !|||!.!!.! !!:!:|||:!:|||||||||:::||||||::: laValHisIleAspAsnGlyValProLeuLeuLeuLysSerLeuLeuPheTyrVal 1401319 : CAGTACATATCGACAATGGAGTTCCTCTGTTACTCAaatctcttttattttatgtg : 1401372 299 : ThrIleAsnLeuGluValPheIleTyrCysLeuSerGlyGluTyrLeuSerAla{L : 317 ..!||| !||||||!.!||||||||||||!!! !||||||||||||||| !{| ValIleCysLeuGluAlaPheIleTyrCysPheValGlyGluTyrLeuSerIle{L 1401373 : GTTATTTGTTTAGAAGCGTTTATATACTGCTTTGTCGGAGAATATCTCAGTATC{A : 1401429 318 : y} >>>> Target Intron 2 >>>> {s}SerLysMetIleGlyAsnAlaA : 325 |} 1004 bp {|}|||:!!:!:|||||||||.!!| y}+- --{s}SerGlnLeuIleGlyAsnThrA 1401430 : A}gg.........................ta{G}AGCCAACTAATCGGCAATACGG : 1402457 326 : laTyrAsnAlaLeuTrpTyrAspIleProThrLysGlnSerArgIleValSerPhe : 343 |||||.!. !||||||||||||:!!! !:!!! :!!|||!:!:!!:!!! ! ! laTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSerGlnLeuLeuIlePro 1402458 : CGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAGCCAACTTCTAATACCT : 1402511 344 : IleIleLeuArgSerGlnLysLeuLeuThrIleThrSerGlyLysIleMetAspLe : 362 :!!|||||||||||||||||| !!!!|||...||| ||||||... ...|| ValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysPheSerSerLe 1402512 : GTAATATTGAGGTCTCAAAAGGGTTTCACGTttacttttggaaaattttcaagtct : 1402568 363 : uSerLeuGluArgPheThrSerVal : 370 ||||||||||!!!||||||:!!||| uSerLeuGluSerPheThrAlaVal 1402569 : CTCCTTGGAAAGCTTTACGGCCGTA : 1402594 vulgar: CbirOr132 233 370 . KQ414716.1 1401096 1402594 + 231 M 26 78 5 0 2 I 0 79 3 0 2 M 57 171 S 0 2 5 0 2 I 0 1000 3 0 2 S 1 1 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401097 1402594 231 + . gene_id 4 ; sequence CbirOr132 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401097 1401174 . + . KQ414716.1 exonerate:protein2genome:local exon 1401097 1401174 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401175 1401176 . + . intron_id 1 ; splice_site "CT" KQ414716.1 exonerate:protein2genome:local intron 1401175 1401257 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1401256 1401257 . + . intron_id 0 ; splice_site "AA" KQ414716.1 exonerate:protein2genome:local cds 1401258 1401430 . + . KQ414716.1 exonerate:protein2genome:local exon 1401258 1401430 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401431 1401432 . + . intron_id 2 ; splice_site "GG" KQ414716.1 exonerate:protein2genome:local intron 1401431 1402434 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1402433 1402434 . + . intron_id 1 ; splice_site "TA" KQ414716.1 exonerate:protein2genome:local cds 1402435 1402594 . + . KQ414716.1 exonerate:protein2genome:local exon 1402435 1402594 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401097 1402594 231 + . alignment_id 4 ; Query CbirOr132 ; Align 1401097 234 78 ; Align 1401258 260 171 ; Align 1402436 318 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr132 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 317 -> 384 Target range: 1387619 -> 1387955 318 : SerLysMetIleGlyAsnAlaAlaTyrAsnAlaLeuTrpTyrAspIleProThrLy : 336 |||:!! ||| !.!.:!:...|||||| ||||||||||||:!! ! !!:: SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 337 : sGlnSerArgIleValSerPheIleIleLeuArgSerGlnLysLeuLeuThrIleT : 355 !:!!:!!||||||||| ...||||||||||||||||||||| !|||! !:!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 356 : hrSerGlyLysIleMetAspLeuSerLeuGluArgPheThrSer >>>> Targe : 370 ||:!!||||||.!!:!!:!!|||||||||! !|||.!!!:: hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt.......... : 1387778 371 : t Intron 1 >>>> ValValLysAlaSerAlaSerTyrLeuSerMetLeuLeu : 382 135 bp ::::!!||||||||||||||||||:!!|||:!:|||! ! ++MetLeuLysAlaSerAlaSerTyrValSerValLeuHis 1387779 : ...............agatgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTTGCAT : 1387947 383 : AlaMet : 384 |||||| AlaMet 1387948 : GCAATG : 1387955 vulgar: CbirOr132 317 384 . KQ414716.1 1387619 1387955 + 161 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387955 161 + . gene_id 5 ; sequence CbirOr132 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387955 161 + . alignment_id 5 ; Query CbirOr132 ; Align 1387620 318 156 ; Align 1387911 370 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr132 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 158 -> 279 Target range: 1386978 -> 1387341 159 : IleLeuLysMetAspPheProPheAsnIleSerThrAsnPheIleTyrMetValIl : 177 |||||||||::: ... ::: ::: ...||| ::: IleLeuLysIleTyrLeuLysTyrIleHisThrGluIleThrPheTyrTyrIleTy 1386979 : atacttaaaatatatttaaaatacattcacactgaaataactttttactatattta : 1387033 178 : eSerValValGlnSerTyrHisLeuThrLeuValAlaTyrGlyIleThrIleIleA : 196 ::::::::: ! ! !!!!!!.! ! ::: |||||| rPheIleIleArgHisGlnAspPheAsnThrTyrLeuIlePheLeuLeuIleIle* 1387034 : ttttataattaggCATCAAGATTTTAACACTTatctaatatttttgttaatcaTTT : 1387090 197 : snSerLeuLeuValThrLeuValLeuHisValGlyGlyGlnIleAspIleLeuArg : 214 !.! !! !:!! !! !:!!||||||||||||||||||||||||:!!||| !! **LysAlaSerLeuLeu***IleLeuHisValGlyGlyGlnIleAspLeuLeuCys 1387091 : GAAAAGCTTCACTGTTGTAGATATTACATGTTGGTGGTCAGATCGATTTATTGTGT : 1387144 215 : GlyTrpLeuLeuThrAlaPheSerLysAsnSerAlaGlnSerMetSerGluIleTh : 233 ! :!! ! ! !! ! !!!!.:!!..! !:!! ! !..!:!!:!:|| GlnAsnMetArgAspIleSerArgAsnHisGluLysLysValProGlnLysLeuTh 1387145 : CAAAACATGAGAGACATTTCTCGTAATCATGAGAAGAAAGTACCGCAAAAACTGAC : 1387201 234 : rLeuArgSerLeuIleThrLysHisGlnGlnIleIleLeuPheSerGluAsnIleG : 252 |:!!!:!..!:!!:!!..!!:!||||||!:!||||||! !.!.|||:!!||||||| rIleLysAspValValValArgHisGlnArgIleIleArgLeuSerLysAsnIleG 1387202 : AATAAAGGATGTCGTTGTTAGGCATCAACGAATTATACGACTGTCTAAAAATATCG : 1387258 253 : luAspLeuTyrThrTyrValAlaLeuMetIleLeuLeuSerAspThrPheIleIle : 270 || :!!!:!||||||:!!:!!||| ...||||||::: .!.:!!||| luThrValPheThrTyrIleSerLeuCysGlnPheLeuSerAsnMetLeuValIle 1387259 : AGACAGTTTTTACTTATATATCATTATgccaatttttatcgaatatgcTGGTTATC : 1387312 271 : CysCysLeuGlyTyrValValAlaThr : 279 |||! !:!!.!!!:!|||:!!!.!||| CysPheIleSerPheValLeuValThr 1387313 : TGTTTCATAAGCTTCGTTTTGGTAACC : 1387341 vulgar: CbirOr132 158 279 . KQ414716.1 1386978 1387341 + 152 M 121 363 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1386979 1387341 152 + . gene_id 6 ; sequence CbirOr132 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1386979 1387341 . + . KQ414716.1 exonerate:protein2genome:local exon 1386979 1387341 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1386979 1387341 152 + . alignment_id 6 ; Query CbirOr132 ; Align 1386979 159 363 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr132 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 2 -> 85 Target range: 1385628 -> 1385874 3 : ThrThrThrLeuSerArgLeuIleArgIleGlyLeuHisIlePheGlyValTrpPr : 21 ||||||! !:!!!:!|||! !:!:..! !.!!|||!.!:!!||||||!.!||||| ThrThrIleIleAsnArgProLeuGluTyrSerLeuArgLeuPheGlyAlaTrpPr 1385629 : ACGACTATAATTAATCGTCCATTGGAATATAGCCTCCGTCTATTTGGCGCCTGGCC : 1385683 22 : oTyrValSerSerThrValLeuPheArgLeuTyrTrpIleValMetLeuSerThrA : 40 | !! !|||! !:!! !!||| !!!:!! !||| ..!!!::!!:!!||| oAspSerSerTyrSerPheLeuLysSerIleIleTrpSerThrIleMetAlaThrP 1385684 : AGATTCTTCCTATTCATTTCTGAAAAGTATTATTTGGTCGACGATAATGGCAAcgt : 1385740 41 : laGlnValPheGlnTyrArgTyrValValValAsnIleHisMetAspAspPheSer : 58 :::||||||||| !!||| !:!!..!:!!|||... ... ... heLeuMetPheGlnTyrTrpTyrCysIleThrHisIleArg---SerGlyLeuIle 1385741 : ttttaatgtttcaataTTGGTATTGTATTACTCATATTAGA---TCAggtttaatt : 1385791 59 : GlnPheMetAspGlyValSerSerAlaMetAlaSerSerLeuLeuPheIleLysLe : 77 ......:::||||||:!!|||! !.!!:!::!!!:!||||||:!!|||:!!||||| AspLeuLeuAspGlyLeuSerIleThrLeuSerAsnSerLeuValPheLeuLysLe 1385792 : gatttattgGACGGATTGAGTATTACTTTATCAAATTCACTCGTCTTTCTCAAATT : 1385848 78 : uIleIleLeuTrpIleAsnGlnArg : 85 |||||||:!!|||:!!:!!...||| uIleIleIleTrpLeuHisSerArg 1385849 : GATTATTATTTGGCTTCATAGTCGG : 1385874 vulgar: CbirOr132 2 85 . KQ414716.1 1385628 1385874 + 148 M 51 153 G 1 0 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1385629 1385874 148 + . gene_id 7 ; sequence CbirOr132 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1385629 1385874 . + . KQ414716.1 exonerate:protein2genome:local exon 1385629 1385874 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local similarity 1385629 1385874 148 + . alignment_id 7 ; Query CbirOr132 ; Align 1385629 3 153 ; Align 1385782 55 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr120 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 644 Query range: 0 -> 376 Target range: 1385619 -> 1387955 1 : MetIleProThrThrThrValSerArgProValGluIleGlyLeuArgLeuThrGl : 19 |||! ! !!||||||! !:!!!:!||||||:!!||| !.!!||||||||| !|| MetThrSerThrThrIleIleAsnArgProLeuGluTyrSerLeuArgLeuPheGl 1385620 : ATGACTTCGACGACTATAATTAATCGTCCATTGGAATATAGCCTCCGTCTATTTGG : 1385674 20 : yIleTrpProAsnSerSerMetLeuPhe<-><->ArgLeuLeuTrpThrMetValM : 36 | !||||||:!!|||||| ! !||| !!!:!!:!!|||:!!! !:!!| yAlaTrpProAspSerSerTyrSerPheLeuLysSerIleIleTrpSerThrIleM 1385675 : CGCCTGGCCAGATTCTTCCTATTCATTTCTGAAAAGTATTATTTGGTCGACGATAA : 1385731 37 : etGlyThrGlyLeuIlePheGlnCysLeuTyrLeuLeuThrHisPheSerIleAla : 54 ||!.!||| |||:::|||||| !! !|||! !:!!||||||.!!!!! :!! etAlaThrPheLeuMetPheGlnTyrTrpTyrCysIleThrHisIleArg---Ser 1385732 : TGGCAAcgtttttaatgtttcaataTTGGTATTGTATTACTCATATTAGA---TCA : 1385782 55 : GluLeuProAsnLeuIleAspGlyLeuSerThrThrLeuProTyrSerLeuLeuPh : 73 ||| :::|||:::||||||||||||! !|||||| !! !!||||||:!!|| GlyLeuIleAspLeuLeuAspGlyLeuSerIleThrLeuSerAsnSerLeuValPh 1385783 : ggtttaattgatttattgGACGGATTGAGTATTACTTTATCAAATTCACTCGTCTT : 1385839 74 : ePheLysLeuIleThrLeuTrpValLysAsn{Gl} >>>> Target Intron : 84 |.!!|||||||||! !:!!|||:!! ! !:!{!:} 486 bp eLeuLysLeuIleIleIleTrpLeuHisSer{Ar}++ 1385840 : TCTCAAATTGATTATTATTTGGCTTCATAGT{CG}gt................... : 1385876 85 : 1 >>>> {n}IlePheLysAspIleLeuThrAlaMetSerLysAspTrpAlaGlu : 99 {!}! !||| ! ! !|||||||||.!!:!:! !:!!|||!! !.!. ++{g}ThrPheTyrGlyIleLeuThrThrValPheGluAspCysAsnAsn 1385877 : ......ag{A}ACATTTTATGGCATTCTGACAACCGTATTCGAGGACTGCAATAAT : 1386403 100 : TyrSer<-><-><-><->AsnMetTyrThrMetValAspLysAlaValLeuSerHi : 114 |||:!! ||| |||..!|||||||||:!!|||||| TyrAlaSerThrValGluAsnLysArgIleMetThrAspLysAlaMetLeuSerSe 1386404 : TATGCTTCTAccgttgaaaataaacgaataatgACAGATAAAGCTATGTTGTCTTC : 1386460 115 : sArgCysSerLysLeuIleIleGlyIleTyrAlaThrAlaValLeuLeuTyrSerT : 133 !||| |||......:::|||||| !!:!:!!! !.!! !!|||:!!|||||| rArgIleSerAsnPheLeuIleGlyTyrPheSerIleThrPheLeuValTyrSerG 1386461 : TCGtatctcaaattttttaattggctATTTTTCGATCACGTTCCTTGTATATTCAG : 1386517 134 : hrAlaThrIle<-><-><->AspPheArgLysGlnThrIleAspAsnGluCysArg : 148 ! !.!!:!! ||| !:!!.!. ! ! !::!::: ||| lyLeuAlaLeuValLeuPheAspGluAspGlnAsnGlyProValSerLysGlnArg 1386518 : GACTTGCTCTAGTATTATTTGATGAAGATCAGAATGGACCGGTTTCCAaacaaagg : 1386571 149 : GlnGlnLeuIleLysMetGluLeuProPheValPheCysAspSerProIleTyrGl : 167 ::: ||||||:::||||||!!!||||||! ! ! ! !|||||| ||||| LysPheLeuIleArgMetGluPheProPheGluAlaThrValSerProArgTyrGl 1386572 : aaatttttaattagaatggAATTTCCTTTCGAAGCTACAGTCTCTCCACgttatga : 1386628 168 : uIleMetValPheValGlnPheIleHisLeuMetAlaValAlaSerThrIleGlyM : 186 ||||:::::: |||||||||||| !:!!!.!! ! ! !!.!! uIleIleLeuValValGlnPheIlePheGluAlaPheIleValTyrGlyAlaAlaT 1386629 : aattattctagttgtacaatttatattcgaagcATTTATAGTTTATGGAGCAGCTA : 1386685 187 : etLeuAspAlaLeuIleValThrLeu >>>> Target Intron 2 >>>> M : 195 ! ! |||||||||!.!..!||| 399 bp ! hrSerIleAlaLeuIleAlaValLeu++ ++I 1386686 : CATCGATAGCCCTAATTGCAGTACTAgt.........................agA : 1387111 196 : etLeuHisIleGlyGlyGlnIleAspIleIleGlnGluGlnLeuGluLysIleCys : 213 !:||||||:!!|||||||||||||||:!!:!: :!!.!.:!!..! ! |||! ! leLeuHisValGlyGlyGlnIleAspLeuLeuCysGlnAsnMetArgAspIleSer 1387112 : TATTACATGTTGGTGGTCAGATCGATTTATTGTGTCAAAACATGAGAGACATTTCT : 1387165 214 : SerGluAspSerLysProHisLeuSerLysAspIleValLysSerLeuIleThrLy : 232 !!.!. !!..!||| ! ! !..!||| ! !:!!|||..!:!!:!!..!!: ArgAsnHisGluLysLysValProGlnLysLeuThrIleLysAspValValValAr 1387166 : CGTAATCATGAGAAGAAAGTACCGCAAAAACTGACAATAAAGGATGTCGTTGTTAG : 1387222 233 : sHisHisLysIleIleAlaPheSerAspLysIleGluSerLeuPheThrGlnIleA : 251 !|||!!.::!|||||| !.!.||| ! !!.||||||!!!:!!|||||| ! |||: gHisGlnArgIleIleArgLeuSerLysAsnIleGluThrValPheThrTyrIleS 1387223 : GCATCAACGAATTATACGACTGTCTAAAAATATCGAGACAGTTTTTACTTATATAT : 1387279 252 : laLeuMetGlnPheLeuSerAsnThrMetIleIleCysCysIleGlyPheLeuIle : 269 !!||| ||||||||||||||| :!!:!!||||||! !|||.!!|||:!!:!: erLeuCysGlnPheLeuSerAsnMetLeuValIleCysPheIleSerPheValLeu 1387280 : CATTATgccaatttttatcgaatatgcTGGTTATCTGTTTCATAAGCTTCGTTTTG : 1387333 270 : ValThr >>>> Target Intron 3 >>>> SerLeuGlyThrAspThrGly : 278 |||||| 85 bp ||||||..!|||!!: ! ! ValThr++ ++SerLeuAsnThrGluGlnThr 1387334 : GTAACCgt.........................agTCCTTGAACACGGAACAGACA : 1387445 279 : IleArgMetMetIleLysThrThrPhePheTyrIleAlaIleThrMetGluSerPh : 297 ! ! !!:!:!!::!:||| ! ! !!:!|||:!!|||:!!!.! |||:!!|| ThrGlyLeuIleLeuLysCysPheProTyrTyrValAlaValAsnCysGluAlaPh 1387446 : ACTGGATTAATACTGAAATGTTTTCCCTATTACGTTGCTGTTAATTGTGAAGCATT : 1387502 298 : eIlePheCysPheSerGlyGluTyrLeuSerSerLys >>>> Target Intro : 310 ||||!!.|||!:!!!!||||||||||||!!!|||||| 79 bp eIleLeuCysTyrThrGlyGluTyrLeuThrSerLys++ 1387503 : CATTTTATGTTATACCGGAGAATATCTAACCTCTAAGgt................. : 1387543 311 : n 4 >>>> SerLysMetIleGlyAspAlaAlaTyrGluSerLeuTrpTyrValL : 325 |||:!! ||| !.!.:!:...|||... |||||||||! !| ++SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspL 1387544 : ........agagtgAACGTATTACACAATCtgtgtacaattttctttggTACGATC : 1387665 326 : euLysProGluAspCysArgIleLeuLeuPheValIleMetArgSerGlnArgArg : 343 ||||||||..!!!:..!||||||:::|||...:::|||:::|||||||||!:!..! euLysProArgGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGlu 1387666 : TAAAACCTCGAGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAG : 1387719 344 : LeuThrIleThrAlaGlyGlnPheMetAspLeuSerLeuGluGlyPheAlaAsn : 362 |||! !:!!|||||||||:!!|||:!!:!!|||||||||! !.!||||||||| LeuIleLeuThrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387720 : TTAATACTCACTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt : 1387776 363 : >>>> Target Intron 5 >>>> SerLeuLysAlaSerAlaSerTyrIleSe : 371 135 bp |||||||||||||||||||||:!!|| ++MetLeuLysAlaSerAlaSerTyrValSe 1387777 : .........................agatgCTAAAAGCTTCAGCCTCGTACGTATC : 1387938 372 : rValLeuTyrAlaMet : 376 |||||||:!!|||||| rValLeuHisAlaMet 1387939 : TGTTTTGCATGCAATG : 1387955 vulgar: CbirOr120 0 376 . KQ414716.1 1385619 1387955 + 644 M 28 84 G 0 6 M 24 72 G 1 0 M 30 90 S 0 2 5 0 2 I 0 482 3 0 2 S 1 1 M 17 51 G 0 12 M 35 105 G 0 9 M 58 174 5 0 2 I 0 395 3 0 2 M 77 231 5 0 2 I 0 81 3 0 2 M 38 114 5 0 2 I 0 75 3 0 2 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1385620 1387955 644 + . gene_id 1 ; sequence CbirOr120 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1385620 1385873 . + . KQ414716.1 exonerate:protein2genome:local exon 1385620 1385873 . + . insertions 6 ; deletions 1 KQ414716.1 exonerate:protein2genome:local splice5 1385874 1385875 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1385874 1386359 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1386358 1386359 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1386360 1386711 . + . KQ414716.1 exonerate:protein2genome:local exon 1386360 1386711 . + . insertions 21 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1386712 1386713 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1386712 1387110 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1387109 1387110 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387111 1387341 . + . KQ414716.1 exonerate:protein2genome:local exon 1387111 1387341 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387342 1387343 . + . intron_id 3 ; splice_site "Gt" KQ414716.1 exonerate:protein2genome:local intron 1387342 1387426 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1387425 1387426 . + . intron_id 2 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387427 1387540 . + . KQ414716.1 exonerate:protein2genome:local exon 1387427 1387540 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387541 1387542 . + . intron_id 4 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387541 1387619 . + . intron_id 4 KQ414716.1 exonerate:protein2genome:local splice3 1387618 1387619 . + . intron_id 3 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 5 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 5 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 4 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1385620 1387955 644 + . alignment_id 1 ; Query CbirOr120 ; Align 1385620 1 84 ; Align 1385710 29 72 ; Align 1385782 54 90 ; Align 1386361 85 51 ; Align 1386424 102 105 ; Align 1386538 137 174 ; Align 1387111 195 231 ; Align 1387427 272 114 ; Align 1387620 310 156 ; Align 1387911 362 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr120 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 357 Query range: 0 -> 195 Target range: 1390523 -> 1392022 1 : MetIleProThrThrThrValSerArgProValGluIleGlyLeuArgLeuThrGl : 19 ||| ! !!.!! !!:!:!!||||||||||||||||||||||||||||||||||| MetSerHisAsnLysSerIleSerArgProValGluIleGlyLeuArgLeuThrGl 1390524 : ATGTCGCATAACAAAAGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGG : 1390578 20 : yIleTrpProAsnSerSer<-><->MetLeuPheArgLeuLeuTrpThrMetValM : 36 ||||||||||..!|||||| !!::!! !!|||:!! !|||! !!!::!!| yIleTrpProGlySerSerTyrGluIleIleValArgValThrTrpIleIleLeuM 1390579 : AATTTGGCCAGGTTCATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTA : 1390635 37 : etGlyThrGlyLeuIlePheGlnCysLeuTyrLeuLeuThrHisPheSerIleAla : 54 || !..!! !! !|||||||||! !! !|||:!!:!!! !|||.!!..! !::! etThrValValGlnIlePheGlnTyrArgTyrIleIleLysHisLeuAspGlySer 1390636 : TGACAGTTGTACAAATATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGT : 1390689 55 : GluLeuProAsnLeuIleAspGlyLeuSerThrThrLeuProTyrSerLeuLeuPh : 73 .!.||| !!||||||||||||.!!:!!.!!||||||||||||||||||||||||!: AsnLeuAlaAsnLeuIleAspSerValGlyThrThrLeuProTyrSerLeuLeuTy 1390690 : AATCTGGCGAACTTAATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTA : 1390746 74 : ePheLysLeuIleThrLeuTrpValLysAsn{Gl} >>>> Target Intron : 84 ! ||||||||| ...|||..!|||..!{ } 884 bp rValLysLeuIleIlePheTrpThrLysArg{Gl}++ 1390747 : TgtcaaattaattattttctggaCTAAACGT{GG}gt................... : 1390783 85 : 1 >>>> {n}IlePheLysAspIleLeuThrAlaMetSerLysAspTrpAlaGlu : 99 {!}||||||:::::::::|||..!!.!||||||!!.||||||::!.!. ++{y}IlePheGluAsnMetLeuValGlyMetSerAsnAspTrpSerAsn 1390784 : ......ag{a}atattcgaaaatatgtTAGTGGGAATGTCTAACGATTGGAGTAAT : 1391708 100 : TyrSer<-><-><-><->AsnMetTyrThrMetValAspLysAlaValLeuSerHi : 114 ! !||| :!!!!: !!.!!|||:!!..!||||||! !|||:!!:! SerSerSerThrLysPheAspIleAsnAlaMetIleSerLysAlaGluLeuAlaTy 1391709 : TCTTCATCAACGAAATTTGACATAAACGCCATGATAAGTAAAGCTGAACTTGCGTA : 1391765 115 : sArgCysSerLysLeuIleIleGlyIleTyrAlaThrAlaValLeuLeuTyrSerT : 133 !|||! !||||||:!!|||!!:.!!! !||||||! !||||||!!! !|||!!!! rArgTyrSerLysValIleMetSerThrTyrAlaIleAlaValPheAlaTyrThrS 1391766 : TCGTTATTCGAAGGTAATTATGAGCACATATGCTATTGCCGTTTTCGCTTATACCA : 1391822 134 : hrAlaThrIleAspPheArgLysGlnThrIleAspAsnGlu<-><-><-><->Cys : 147 :!!.! !.!!!!:|||! !:::!!. !! !|||..!||| ! ! erValPhePheGluPheMetArgHisAspAsnAspGlyGluTyrAspLeuLysSer 1391823 : GCGTGTTTTTCGAGTTTATGCGTCACGACAACGACGGCGAATATGATTTAAAGTCT : 1391876 148 : ArgGlnGlnLeuIleLysMetGluLeuProPheValPheCysAspSerProIleTy : 166 |||:!!! |||!!:||||||!!:|||||||||!.!!:!! ! ! !!!|||! || ArgGluLeuLeuMetLysMetAspLeuProPheAlaTyrTyrLysThrProThrTy 1391877 : CGAGAACTTTTGATGAAAATGGACCTCCCGTTTGCGTATTACAAAACACCGACGTA : 1391933 167 : rGluIleMetValPheValGlnPheIleHisLeuMetAlaValAlaSerThrIleG : 185 |:!! :!: !! !!|||||||||:!!!!.|||:!! ! !||||||.!!|||| rGlnTrpValPheValValGlnPheLeuGlnLeuLeuIleAsnAlaSerAlaIleG 1391934 : TCAATGGGTATTTGTTGTACAATTTCTTCAGCTGTTGATAAATGCATCTGCTATTG : 1391990 186 : lyMetLeuAspAlaLeuIleValThrLeuMet : 195 ||||||||||||||||||||:!!||||||:!: lyMetLeuAspAlaLeuIleIleThrLeuVal 1391991 : GTATGTTAGATGCTTTGATAATTACGTTGGTA : 1392022 vulgar: CbirOr120 0 195 . KQ414716.1 1390523 1392022 + 357 M 25 75 G 0 6 M 58 174 S 0 2 5 0 2 I 0 880 3 0 2 S 1 1 M 17 51 G 0 12 M 45 135 G 0 12 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390524 1392022 357 + . gene_id 2 ; sequence CbirOr120 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1390524 1390780 . + . KQ414716.1 exonerate:protein2genome:local exon 1390524 1390780 . + . insertions 6 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1390781 1390782 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1390781 1391664 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1391663 1391664 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1391665 1392022 . + . KQ414716.1 exonerate:protein2genome:local exon 1391665 1392022 . + . insertions 24 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390524 1392022 357 + . alignment_id 2 ; Query CbirOr120 ; Align 1390524 1 75 ; Align 1390605 26 174 ; Align 1391666 85 51 ; Align 1391729 102 135 ; Align 1391876 147 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr120 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 342 Query range: 218 -> 376 Target range: 1408270 -> 1409528 219 : ProHisLeuSerLysAspIleValLysSerLeuIleThrLysHisHisLysIleIl : 237 |||:!! !!:!||| ! !:!!!:!! !!!!|||!:!!:!|||!!.:!!||||| ProTyrLysAsnLysThrGlnLeuArgPhePheIleSerArgHisGlnGlnIleIl 1408271 : CCTTATAAGAATAAAACTCAACTGAGATTCTTCATCAGCAGACATCAACAGATCAT : 1408325 238 : eAlaPheSerAspLysIleGluSerLeuPheThrGlnIleAlaLeuMetGlnPheL : 256 | !|||:!!!!:!:!||||||!.!||||||||| ! :!!||||||! |||.!!| eIlePheAlaGluArgIleGluLysLeuPheThrTyrLeuAlaLeuSerGlnLeuL 1408326 : CATATTTGCAGAGAGAATAGAAAAACTGTTTACGTATCTAGCACTTAGTCAACTTC : 1408382 257 : euSerAsnThrMetIleIleCysCysIle{Gl} >>>> Target Intron 1 : 266 |||||||||||:!:|||! !||||||:!:{||} 86 bp euSerAsnThrLeuIleThrCysCysVal{Gl}-+ 1408383 : TCTCGAATACCCTAATTACTTGCTGCGTG{GG}tt..................... : 1408416 267 : >>>> {y}<-><->PheLeuIleValThrSerLeuGlyThrAspThrGlyIleAr : 280 {|} !|||! :!! !:!!||| !!.!:!!!.!|||.!!!: ++{y}***SerAsnLeuThrLeuGlnAlaLeuGlnAsnAsnAsnGlyPheLy 1408417 : ....ag{A}TGATCGAATTTAACGTTACAGGCACTACAAAATAATAATGGATTTAA : 1408546 281 : gMetMetIleLysThrThrPhePheTyrIleAlaIleThrMetGluSerPheIleP : 299 !|||:!!|||||| !..! ! !:!|||!!:|||:!: ! |||:!!||||||! sMetLeuIleLysPheValValTyrTyrMetAlaValCysSerGluAlaPheIleT 1408547 : AATGTTGATCAAATTTGTTGTATATTACATGGCTGTGTGCTCAGAAGCGTTCATAT : 1408603 300 : heCysPheSerGlyGluTyrLeuSerSerLys >>>> Target Intron 2 > : 310 :!||||||:!!||||||||||||!:!! !||| 414 bp yrCysPheAlaGlyGluTyrLeuAsnIleLys++ 1408604 : ACTGCTTTGCTGGAGAGTACCTTAATATCAAGgt...................... : 1408638 311 : >>> SerLysMetIleGlyAspAlaAlaTyrGluSerLeuTrpTyrValLeuLys : 326 ||||||:::|||||||||.!!|||||||||! !||||||||| !:!! ! ++SerLysLeuIleGlyAspThrAlaTyrGluPheLeuTrpTyrAsnMetHis 1408639 : ...agagtaaactgattggagACACGGCGTATGAATTTCTTTGGTATAATATGCAT : 1409098 327 : ProGluAspCysArgIleLeuLeuPheValIleMetArgSerGlnArgArgLeuTh : 345 !!:!!!!: !!|||:!!:!!|||.!!||||||:!:|||||||||!:! !!!!!|| SerLysGluSerArgLeuMetLeuLeuValIleLeuArgSerGlnLysGlyPheTh 1409099 : TCGAAGGAAAGCCGACTTATGTTGCTTGTAATACTACGATCACAGAAAGGATTTAC : 1409155 346 : rIleThrAlaGlyGlnPheMetAspLeuSerLeuGluGlyPheAlaAsn >>>> : 362 |...||| |||:::||| ...||||||:!!|||.!!||||||..! rPheThrPheGlyLysPheAlaSerLeuSerMetGluSerPheAlaGly++ 1409156 : tttcacttttggaaaatttgcaagtCTTTCCATGGAAAGTTTTGCAGGCgt..... : 1409208 363 : Target Intron 3 >>>> SerLeuLysAlaSerAlaSerTyrIleSerValL : 373 278 bp :!!|||||||||||||||||||||||||||| ++IleMetLysAlaSerAlaSerTyrIleSerValL 1409209 : ....................agattATGAAAGCTTCTGCATCGTATATATCCGTAT : 1409517 374 : euTyrAlaMet : 376 || !|||||| euLeuAlaMet 1409518 : TGCTCGCAATG : 1409528 vulgar: CbirOr120 218 376 . KQ414716.1 1408270 1409528 + 342 M 47 141 S 0 2 5 0 2 I 0 82 3 0 2 S 1 1 G 0 6 M 43 129 5 0 2 I 0 410 3 0 2 M 52 156 5 0 2 I 0 274 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408271 1409528 342 + . gene_id 3 ; sequence CbirOr120 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408271 1408413 . + . KQ414716.1 exonerate:protein2genome:local exon 1408271 1408413 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408414 1408415 . + . intron_id 1 ; splice_site "TT" KQ414716.1 exonerate:protein2genome:local intron 1408414 1408499 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1408498 1408499 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1408500 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408500 1408635 . + . insertions 6 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408636 1408637 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408636 1409049 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1409048 1409049 . + . intron_id 1 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409050 1409205 . + . KQ414716.1 exonerate:protein2genome:local exon 1409050 1409205 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1409206 1409207 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1409206 1409483 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1409482 1409483 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409484 1409528 . + . KQ414716.1 exonerate:protein2genome:local exon 1409484 1409528 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408271 1409528 342 + . alignment_id 3 ; Query CbirOr120 ; Align 1408271 219 141 ; Align 1408507 267 129 ; Align 1409050 310 156 ; Align 1409484 362 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr120 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 305 Query range: 194 -> 312 Target range: 1394161 -> 1394979 195 : MetLeuHisIleGlyGlyGlnIleAspIleIleGlnGluGlnLeuGluLysIleCy : 213 !!:!!!||||||||||||||||||!!:!!::!:|||:!! ||| ...||| IlePheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAsnIleSe 1394162 : ATATTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaatatttc : 1394216 214 : sSerGluAspSerLysProHisLeuSerLysAspIleValLysSerLeuIleThrL : 232 :::|||..!|||! !...||||||!:!:!!! !..!|||||||||||| !! rIleLysAspGluLysHisArgLeuSerArgAsnThrThrLysSerLeuIleHisA 1394217 : tattaaagATGAGAAACACAGATTATCGAGAAACACCACCAAATCATTAATTCACA : 1394273 233 : ysHisHisLysIleIleAlaPheSerAspLysIleGluSerLeuPheThrGlnIle : 250 :!||||||::!|||||| ! !||||||...|||||||||||||||:!! ! ||| rgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIle 1394274 : GACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACATT : 1394327 251 : AlaLeuMetGlnPheLeuSerAsnThrMetIleIleCysCysIleGly{Ph} >> : 267 ||||||||||||!::|||!!!||||||:!::!!|||||||||||||||{||} AlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGly{Ph}-+ 1394328 : GCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGA{TT}ct.. : 1394382 268 : >> Target Intron 1 >>>> {e}LeuIleValThrSerLeuGlyThrAspT : 277 464 bp {|}|||:::::: !:!!!!!..!|||||| +-{e}LeuLeuLeu***AlaPheAsnThrAspG 1394383 : .......................at{t}ttattgttgtaGGCATTTAATACAGatg : 1394872 278 : hrGlyIleArgMetMetIleLysThrThrPhePheTyrIleAlaIleThrMetGlu : 295 ...|||::: ...||||||||| !.!!|||||||||||||||||||||||| lyAsnIleLysThrPheIleLysThrLeuLeuPheTyrIleAlaIleThrMetGlu 1394873 : gaaatataaaaacatttataaaaacattACTCTTTTACATCGCTATCACTATGGAA : 1394926 296 : SerPheIlePheCysPheSerGlyGluTyrLeuSerSerLysSerLysMet : 312 :!!|||||||||! !|||:!!|||||||||||||||!:!||| !!..||| AlaPheIlePheSerPheAlaGlyGluTyrLeuSerAsnLysValSerMet 1394927 : GCATTCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAAGTTAGTATG : 1394979 vulgar: CbirOr120 194 312 . KQ414716.1 1394161 1394979 + 305 M 72 216 S 0 2 5 0 2 I 0 460 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394162 1394979 305 + . gene_id 4 ; sequence CbirOr120 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394162 1394379 . + . KQ414716.1 exonerate:protein2genome:local exon 1394162 1394379 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394380 1394381 . + . intron_id 1 ; splice_site "CT" KQ414716.1 exonerate:protein2genome:local intron 1394380 1394843 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394842 1394843 . + . intron_id 0 ; splice_site "at" KQ414716.1 exonerate:protein2genome:local cds 1394844 1394979 . + . KQ414716.1 exonerate:protein2genome:local exon 1394844 1394979 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394162 1394979 305 + . alignment_id 4 ; Query CbirOr120 ; Align 1394162 195 216 ; Align 1394845 268 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr120 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 176 Query range: 309 -> 361 Target range: 1395323 -> 1395479 310 : SerLysMetIleGlyAspAlaAlaTyrGluSerLeuTrpTyrValLeuLysProGl : 328 ||| ! |||.!!:!!|||||||||...|||! !||||||:!!||| ! |||:! SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 329 : uAspCysArgIleLeuLeuPheValIleMetArgSerGlnArgArgLeuThrIleT : 347 !||| ! !.!|||:!!:!!.!!:!!!!:!!:||||||||||||||||||||||||| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 348 : hrAlaGlyGlnPheMetAspLeuSerLeuGluGlyPheAlaAsn : 361 ||||||||:!!||||||||||||||||||||||||||||||||| hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsn 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAAT : 1395479 vulgar: CbirOr120 309 361 . KQ414716.1 1395323 1395479 + 176 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395479 176 + . gene_id 5 ; sequence CbirOr120 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395479 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395479 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395479 176 + . alignment_id 5 ; Query CbirOr120 ; Align 1395324 310 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr120 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 309 -> 377 Target range: 1402435 -> 1402808 310 : SerLysMetIleGlyAspAlaAlaTyrGluSerLeuTrpTyrValLeuLysProGl : 328 |||:!!:!:||||||:!!.!!|||||||||! !|||||||||! !|||::: !! SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerTh 1402436 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAAC : 1402490 329 : uAspCysArgIleLeuLeuPheValIleMetArgSerGlnArgArgLeuThrIleT : 347 !!: !!!:!:!!|||:!! !||||||:!!|||||||||!:! !!!!!|||...| rGluSerGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheT 1402491 : TGAAAGCCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACGTtta : 1402547 348 : hrAlaGlyGlnPheMetAspLeuSerLeuGluGlyPheAlaAsn >>>> Targe : 362 || |||:::||| ...||||||||||||.!!|||.!! ! hrPheGlyLysPheSerSerLeuSerLeuGluSerPheThrAla++ 1402548 : cttttggaaaattttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.......... : 1402594 363 : t Intron 1 >>>> SerLeuLysAlaSerAlaSerTyrIleSerValLeuTyr : 374 169 bp ! !:!!|||!.!|||||||||||||||||||||||| ! ++IleMetLysValSerAlaSerTyrIleSerValLeuLeu 1402595 : ...............agATCATGAAAGTCTCAGCATCATATATATCAGTACTTCTT : 1402797 375 : AlaMetTyr : 377 |||:!!||| AlaValTyr 1402798 : GCAGTGTAT : 1402808 vulgar: CbirOr120 309 377 . KQ414716.1 1402435 1402808 + 162 M 52 156 5 0 2 I 0 165 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1402436 1402808 162 + . gene_id 6 ; sequence CbirOr120 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1402436 1402591 . + . KQ414716.1 exonerate:protein2genome:local exon 1402436 1402591 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1402592 1402593 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1402592 1402760 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1402759 1402760 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402761 1402808 . + . KQ414716.1 exonerate:protein2genome:local exon 1402761 1402808 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1402436 1402808 162 + . alignment_id 6 ; Query CbirOr120 ; Align 1402436 310 156 ; Align 1402761 362 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr120 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 225 -> 270 Target range: 1401096 -> 1401231 226 : ValLysSerLeuIleThrLysHisHisLysIleIleAlaPheSerAspLysIleGl : 244 :::||| ...|||..!!:!|||!!.:!!||||||!.!|||:!!!!:!:!||||| IleLysPhePheIleAsnArgHisGlnGluIleIleValPheAlaGluArgIleGl 1401097 : ataaaattcttcattaACAGACATCAGGAAATTATTGTTTTTGCAGAAAGAATTGA : 1401151 245 : uSerLeuPheThrGlnIleAlaLeuMetGlnPheLeuSerAsnThrMetIleIleC : 263 |!.!||||||||| ! !!:||||||! |||.!!:!!|||||||||!!:||||||| uLysLeuPheThrTyrMetAlaLeuSerGlnLeuValSerAsnThrIleIleIleC 1401152 : GAAACTTTTTACATACATGGCTCTCAGTCAACTTGTGTCCAATACGATAATTATAT : 1401208 264 : ysCysIleGlyPheLeuIleVal : 270 |||||:!!|||||||||:!!||| ysCysValGlyPheLeuValVal 1401209 : GTTGCGTAGGATTTCTCGTTGTA : 1401231 vulgar: CbirOr120 225 270 . KQ414716.1 1401096 1401231 + 145 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401097 1401231 145 + . gene_id 7 ; sequence CbirOr120 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1401097 1401231 . + . KQ414716.1 exonerate:protein2genome:local exon 1401097 1401231 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401097 1401231 145 + . alignment_id 7 ; Query CbirOr120 ; Align 1401097 226 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr120 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 73 -> 195 Target range: 1398586 -> 1398958 74 : PheLysLeuIleThrLeuTrpValLysAsnGlnIlePheLysAspIleLeuThrAl : 92 ||| ||| !! !:!! !:!! :!!...:!!|||!..|||||||||:!!.! PhePheLeuSerLysIleThrIlePheHisSerValPheSerAspIleLeuSerTh 1398587 : ttttttttgtCTAAAATAACGATATTTCACAGCGTATTTAGTGACATTTTATCAAC : 1398641 93 : aMetSerLysAspTrpAlaGluTyrSerAsnMet<-><-><->TyrThrMetValA : 108 !|||..!:!!|||!! !:!!|||:!! !!!: ! !||| ! rMetGluGluAspCysGlnLysTyrAlaAlaIleAspIleAsnLysLeuMetSerL 1398642 : CATGGAAGAGGATTGTCAGAAATATGCTGCTATAGATATAAATAAGTTGATGTCAA : 1398698 109 : spLysAlaValLeuSerHisArgCysSerLysLeuIleIleGlyIleTyrAlaThr : 126 ! ! !.! |||||| :::...:!!:!!!!:..!:!:||| !.!! ysThrGlyGlnLeuSerPheTyrLeuThrSerIleValMetSerLeuTyrMetAla 1398699 : AAACCGGACAgctatctttttatttaacaagcATTGTTATGTCTTTGTATATGGCA : 1398752 127 : AlaValLeuLeuTyrSerThrAlaThrIleAspPheArgLysGlnThrIleAspAs : 145 :!!!.! !!!!|||! !||| !||||||! |||!:! !.!.!.! ! :: SerAlaAlaPheTyrIleThrAsnThrIleGlyPheGlnGlyAsnAsnAla---Se 1398753 : TCTGCAGCATTTTACATAACTAATACTATTGGATTTCAAGGAAATAATGCT---TC : 1398806 146 : nGluCysArgGlnGlnLeuIleLysMetGluLeuProPheValPheCysAspSerP : 164 :! !! !|||:!!! |||!!:||||||!!:|||||||||! ! ! !!!!:|||| rValSerArgGluLeuLeuMetLysMetAspLeuProPheGluThrSerGluSerP 1398807 : AGTATCTCGGGAGCTCCTTATGAAAATGGATTTGCCTTTCGAGACCAGCGAATCGC : 1398863 165 : roIleTyrGluIleMetValPheValGlnPheIleHisLeuMetAlaValAlaSer : 182 ||! !||||||:!!:!:||| !..!||| !!:!! !! !:!::!!|||||| ! roAsnTyrGluLeuValValThrThrGlnValLeuIleHisLeuSerValAlaVal 1398864 : CGAATTACGAACTTGTAGTAACTACACAGGTCCTTATTCACTTATCAGTGGCCGTA : 1398917 183 : ThrIleGlyMetLeuAspAlaLeuIleValThrLeuMet : 195 .!! !||| !!!:!!||||||:!!:!!! !:!!:!: AlaTyrGlyAlaPheAsnAlaLeuLeuLeuMetValVal 1398918 : GCATACGGTGCATTCAATGCTCTTCTCTTAATGGTGGTA : 1398958 vulgar: CbirOr120 73 195 . KQ414716.1 1398586 1398958 + 114 M 30 90 G 0 9 M 40 120 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1398587 1398958 114 + . gene_id 8 ; sequence CbirOr120 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1398587 1398958 . + . KQ414716.1 exonerate:protein2genome:local exon 1398587 1398958 . + . insertions 9 ; deletions 1 KQ414716.1 exonerate:protein2genome:local similarity 1398587 1398958 114 + . alignment_id 8 ; Query CbirOr120 ; Align 1398587 74 90 ; Align 1398686 104 120 ; Align 1398806 145 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr120 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 94 -> 195 Target range: 1405800 -> 1406100 95 : LysAspTrpAlaGluTyrSerAsnMetTyrThrMetValAspLysAlaValLeuSe : 113 ||| ! !::|||! ...... ::: !||| !||||| LysLysTyrAlaValLeuAspThrLysAsnLeuIleSerLysThrAlaHisLeuSe 1405801 : AAAAAGTACGCTGTTCttgatacaaaaaatttaatatcaaaaaCAGCACATCTATC : 1405855 114 : rHisArgCysSerLysLeuIleIleGlyIleTyrAlaThrAlaValLeuLeuTyrS : 132 | !|||! !!!!!.:!!:!:||| !!|||! !!.!:!!:!!..! !! !|||: rPheArgLeuThrAsnIleValIleCysIleCysValSerSerThrAlaCysTyrA 1405856 : TTTTCGATTAACCAATATAGTGATATGTATCTGTGTATCATCCACGGCATGTTATG : 1405912 133 : erThrAlaThrIleAspPheArgLysGlnThrIleAspAsnGluCysArgGlnGln : 150 !!! !!.!..!:!:! !:!!:! !.!||| !..! ! !|||:!!! laIleGlyValLeuAlaProGlnArgThrAsnIle---ThrAlaProArgGluLeu 1405913 : CAATTGGAGTTTTGGCGCCACAAAGGACTAATATA---ACAGCACCTCGAGAACTT : 1405963 151 : LeuIleLysMetGluLeuProPheValPheCysAspSerProIleTyrGluIleMe : 169 ||||||||||||!!:||||||||| ! !:!!|||||||||||||||:!::! LeuIleLysMetAspLeuProPheAsnThrAsnAsnSerProIleTyrGluLeuVa 1405964 : TTGATAAAAATGGACTTGCCATTTAATACGAACAATTCGCCTATTTACGAGCTGGT : 1406020 170 : tValPheValGlnPheIleHisLeuMetAlaValAlaSerThrIleGlyMetLeuA : 188 ::!! !!:!!|||!:!:!! ! !:!::!!..!|||! !|||.!!|||:!:!!!. lIleValLeuGlnTyrLeuCysLysValSerThrAlaPheThrPheGlyValPheS 1406021 : AATAGTTTTACAATACCTATGCAAAGTATCGACAGCTTTTACGTTTGGTGTATTCA : 1406077 189 : spAlaLeuIleValThrLeuMet : 195 .!::!|||:!!:!!! !:!!:!: erSerLeuLeuLeuMetMetVal 1406078 : GCAGTCTGCTTTTGATGATGGTA : 1406100 vulgar: CbirOr120 94 195 . KQ414716.1 1405800 1406100 + 107 M 49 147 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1405801 1406100 107 + . gene_id 9 ; sequence CbirOr120 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1405801 1406100 . + . KQ414716.1 exonerate:protein2genome:local exon 1405801 1406100 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local similarity 1405801 1406100 107 + . alignment_id 9 ; Query CbirOr120 ; Align 1405801 95 147 ; Align 1405948 145 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr130 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 678 Query range: 12 -> 395 Target range: 1385637 -> 1387955 13 : ValSerArgSerIleGluMetGlyLeuArgMetIleGlyValTrpProAspSerSe : 31 :!!!:!||| !!:!:||| .!!||||||:!:.!!|||!.!|||||||||||||| IleAsnArgProLeuGluTyrSerLeuArgLeuPheGlyAlaTrpProAspSerSe 1385638 : ATTAATCGTCCATTGGAATATAGCCTCCGTCTATTTGGCGCCTGGCCAGATTCTTC : 1385692 32 : rTyrThrIleLeuHisArgAlaPheTrpMetIleThrLeuThrMetAlaGlnThrP : 50 ||||:!!.!!||| ! !!! !.!!||| !! ! !:!!.!!! | rTyrSerPheLeuLysSerIleIleTrpSerThrIleMetAlaThrPheLeuMetP 1385693 : CTATTCATTTCTGAAAAGTATTATTTGGTCGACGATAATGGCAAcgtttttaatgt : 1385749 51 : heGlnTyrTrpTyrPheIleIleHisValArgThrAspAspLeuSerHisLeuMet : 68 ||||||||||||||! !|||! !|||:!!|||:!! ||| |||::: heGlnTyrTrpTyrCysIleThrHisIleArgSer---GlyLeuIleAspLeuLeu 1385750 : ttcaataTTGGTATTGTATTACTCATATTAGATCA---ggtttaattgatttattg : 1385800 69 : AspGlyLeuSerThrThrMetSerTyrSerLeuLeuLeuLeuLysLeuThrIlePh : 87 ||||||||||||! !|||:!:||| !!||||||:!!!!!|||||||||! !|||.! AspGlyLeuSerIleThrLeuSerAsnSerLeuValPheLeuLysLeuIleIleIl 1385801 : GACGGATTGAGTATTACTTTATCAAATTCACTCGTCTTTCTCAAATTGATTATTAT : 1385857 88 : eTrpValAsnArg{Ar} >>>> Target Intron 1 >>>> {g}IlePheH : 95 !|||:!!:!!!!!{||} 486 bp {|}! !|||: eTrpLeuHisSer{Ar}++ ++{g}ThrPheT 1385858 : TTGGCTTCATAGT{CG}gt.........................ag{A}ACATTTT : 1386367 96 : isAsnIleLeuAsnThrMetAlaArgAspArgSerGluCysAlaThrAspTrpAla : 113 !!..!||||||!..|||:!: !..!||| !!!:!.!.! !|||:!! yrGlyIleLeuThrThrValPheGluAspCysAsnAsnTyrAlaSerThrValGlu 1386368 : ATGGCATTCTGACAACCGTATTCGAGGACTGCAATAATTATGCTTCTAccgttgaa : 1386421 114 : Gly<->TyrLeuMetSerArgThrValTyrValSerHisArgSerSerAsnLeuIl : 131 ... :::|||!!! !! !!.! :!!||| !||| ||||||...:: AsnLysArgIleMetThrAspLysAlaMetLeuSerSerArgIleSerAsnPheLe 1386422 : aataaacgaataatgACAGATAAAGCTATGTTGTCTTCTCGtatctcaaatttttt : 1386478 132 : eIleGlyLeuTyrSerMetSerValIleLeuTyrGlyThrGlyValLeuIleAlaH : 150 :|||||| !!:!|||!!:!!! !!:!!:!!|||..! ! !!.!|||:!! ! uIleGlyTyrPheSerIleThrPheLeuValTyrSerGlyLeuAlaLeuValLeuP 1386479 : aattggctATTTTTCGATCACGTTCCTTGTATATTCAGGACTTGCTCTAGTATTAT : 1386535 151 : isSerAspGluProGluAspGluLeuAsnGluGlnLeuAlaValProThrArgGlu : 168 !..!!!:!!:! !.!.! !:!!::!:::||| |||::: heAspGluAspGlnAsnGlyProValSerLysGln---------------ArgLys 1386536 : TTGATGAAGATCAGAATGGACCGGTTTCCAaacaa---------------aggaaa : 1386574 169 : LeuPheLeuLysMetGluLeuProPheGluSerAsnAlaSerProValTyrGluVa : 187 ......::::::||||||!!!|||||||||:!!!..!.!|||||| ||||||:: PheLeuIleArgMetGluPheProPheGluAlaThrValSerProArgTyrGluIl 1386575 : tttttaattagaatggAATTTCCTTTCGAAGCTACAGTCTCTCCACgttatgaaat : 1386631 188 : lValMetValThrGlnPhePheHisGlnLeuAlaAlaAlaThrIleValGlyValL : 206 :::::::|||...||||||... ::: ! ! !!.! ! !!.!!.!..!! eIleLeuValValGlnPheIlePheGluAlaPheIleValTyrGlyAlaAlaThrS 1386632 : tattctagttgtacaatttatattcgaagcATTTATAGTTTATGGAGCAGCTACAT : 1386688 207 : euAsnAlaLeuIleValSerLeu >>>> Target Intron 2 >>>> IleL : 215 !! |||||||||!.! !||| 399 bp |||| erIleAlaLeuIleAlaValLeu++ ++IleL 1386689 : CGATAGCCCTAATTGCAGTACTAgt.........................agATAT : 1387114 216 : euHisValGlyGlyGlnIleAspIleMetCysArgGlyLeuValGluIleSerSer : 233 |||||||||||||||||||||||:!!:!!|||!:!..!:!! !!!:|||||| !! euHisValGlyGlyGlnIleAspLeuLeuCysGlnAsnMetArgAspIleSerArg 1387115 : TACATGTTGGTGGTCAGATCGATTTATTGTGTCAAAACATGAGAGACATTTCTCGT : 1387168 234 : GlyAspGlyMetPheAspLeuProAlaThrSerIleLysThrLeuIleHisArgHi : 252 ..! !!! !! ! ! ! !! ! ! !!!!|||||| !:!!:!! !||||| AsnHisGluLysLysValProGlnLysLeuThrIleLysAspValValValArgHi 1387169 : AATCATGAGAAGAAAGTACCGCAAAAACTGACAATAAAGGATGTCGTTGTTAGGCA : 1387225 253 : sGlnArgIleIleAlaLeuSerAlaAspIleGluThrLeuPheSerTyrIleAlaL : 271 ||||||||||||| !|||||| !:!!|||||||||:!!|||!!!||||||:!!| sGlnArgIleIleArgLeuSerLysAsnIleGluThrValPheThrTyrIleSerL 1387226 : TCAACGAATTATACGACTGTCTAAAAATATCGAGACAGTTTTTACTTATATATCAT : 1387282 272 : euMetGlnPheMetTrpAsnThrSerValIleCysCysLeuGlyPheLeuIleVal : 289 || ||||||::: ||| !|||||||||! !:!!.!!|||:!!:!:||| euCysGlnPheLeuSerAsnMetLeuValIleCysPheIleSerPheValLeuVal 1387283 : TATgccaatttttatcgaatatgcTGGTTATCTGTTTCATAAGCTTCGTTTTGGTA : 1387336 290 : Thr >>>> Target Intron 3 >>>> SerIleGlyAspSerGluGlySer : 298 ||| 85 bp |||:!:..! ..!:!! !!!! Thr++ ++SerLeuAsnThrGluGlnThrThr 1387337 : ACCgt.........................agTCCTTGAACACGGAACAGACAACT : 1387448 299 : ThrMetLeuValLysSerLeuPhePheTyrValValIleThrLeuGluAlaPheIl : 317 !:!::!!:!!|||!!!!!! !!:!||||||!.!:!!!.!! !||||||||||| GlyLeuIleLeuLysCysPheProTyrTyrValAlaValAsnCysGluAlaPheIl 1387449 : GGATTAATACTGAAATGTTTTCCCTATTACGTTGCTGTTAATTGTGAAGCATTCAT : 1387505 318 : ePheCysTyrAlaGlyGluTyrLeuSerAlaLys >>>> Target Intron 4 : 329 |!!.||||||.!!||||||||||||!!!:!!||| 79 bp eLeuCysTyrThrGlyGluTyrLeuThrSerLys++ 1387506 : TTTATGTTATACCGGAGAATATCTAACCTCTAAGgt.................... : 1387543 330 : >>>> SerArgMetIleGlyAspAlaAlaTyrGluAlaLysTrpTyrAsnSerS : 345 |||..! ||| !.!.:!:...|||... ||||||:!! !! ++SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuL 1387544 : .....agagtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAA : 1387668 346 : erProLysGlnSerArgValLeuLeuLeuLeuIleLeuArgSerGlnArgLysLeu : 363 .!|||::!:!!:!!|||::::::||||||:::|||||||||||||||!:!:!!||| ysProArgGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeu 1387669 : AACCTCGAGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTA : 1387722 364 : ThrIleThrIleGlyLysPheMetAspLeuSerLeuGluArgPheThrThr >>> : 381 ! !:!!||| |||||||||:!!:!!|||||||||! !|||.!!!.. IleLeuThrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387723 : ATACTCACTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt... : 1387778 382 : > Target Intron 5 >>>> IleIleLysAlaSerAlaSerTyrValSerVa : 391 135 bp ::::!!|||||||||||||||||||||||||| ++MetLeuLysAlaSerAlaSerTyrValSerVa 1387779 : ......................agatgCTAAAAGCTTCAGCCTCGTACGTATCTGT : 1387941 392 : lLeuHisAlaMet : 395 ||||||||||||| lLeuHisAlaMet 1387942 : TTTGCATGCAATG : 1387955 vulgar: CbirOr130 12 395 . KQ414716.1 1385637 1387955 + 678 M 49 147 G 1 0 M 29 87 S 0 2 5 0 2 I 0 482 3 0 2 S 1 1 M 22 66 G 0 3 M 47 141 G 5 0 M 47 141 5 0 2 I 0 395 3 0 2 M 77 231 5 0 2 I 0 81 3 0 2 M 38 114 5 0 2 I 0 75 3 0 2 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1385638 1387955 678 + . gene_id 1 ; sequence CbirOr130 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1385638 1385873 . + . KQ414716.1 exonerate:protein2genome:local exon 1385638 1385873 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local splice5 1385874 1385875 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1385874 1386359 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1386358 1386359 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1386360 1386711 . + . KQ414716.1 exonerate:protein2genome:local exon 1386360 1386711 . + . insertions 3 ; deletions 5 KQ414716.1 exonerate:protein2genome:local splice5 1386712 1386713 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1386712 1387110 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1387109 1387110 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387111 1387341 . + . KQ414716.1 exonerate:protein2genome:local exon 1387111 1387341 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387342 1387343 . + . intron_id 3 ; splice_site "Gt" KQ414716.1 exonerate:protein2genome:local intron 1387342 1387426 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1387425 1387426 . + . intron_id 2 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387427 1387540 . + . KQ414716.1 exonerate:protein2genome:local exon 1387427 1387540 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387541 1387542 . + . intron_id 4 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387541 1387619 . + . intron_id 4 KQ414716.1 exonerate:protein2genome:local splice3 1387618 1387619 . + . intron_id 3 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 5 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 5 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 4 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1385638 1387955 678 + . alignment_id 1 ; Query CbirOr130 ; Align 1385638 13 147 ; Align 1385785 63 87 ; Align 1386361 93 66 ; Align 1386430 115 141 ; Align 1386571 167 141 ; Align 1387111 214 231 ; Align 1387427 291 114 ; Align 1387620 329 156 ; Align 1387911 381 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr130 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 368 Query range: 243 -> 395 Target range: 1401093 -> 1402805 244 : SerIleLysThrLeuIleHisArgHisGlnArgIleIleAlaLeuSerAlaAspIl : 262 ...|||||| ...|||:!!|||||||||..!||||||!.!!!!:!!! ! || GlnIleLysPhePheIleAsnArgHisGlnGluIleIleValPheAlaGluArgIl 1401094 : caaataaaattcttcattaACAGACATCAGGAAATTATTGTTTTTGCAGAAAGAAT : 1401148 263 : eGluThrLeuPheSerTyrIleAlaLeuMetGlnPheMetTrpAsnThrSerValI : 281 ||||! !||||||!!!|||!!:||||||! |||.!!:!!! ||||||! !:!!| eGluLysLeuPheThrTyrMetAlaLeuSerGlnLeuValSerAsnThrIleIleI 1401149 : TGAGAAACTTTTTACATACATGGCTCTCAGTCAACTTGTGTCCAATACGATAATTA : 1401205 282 : leCysCysLeuGlyPheLeuIleValThr >>>> Target Intron 1 >>>> : 291 ||||||||:!!|||||||||:!!|||! ! 83 bp leCysCysValGlyPheLeuValValIle++ 1401206 : TATGTTGCGTAGGATTTCTCGTTGTAATTgt......................... : 1401237 292 : SerIleGlyAspSerGluGlySerThrMetLeuValLysSerLeuPhePheTyr : 308 :!!:!! ! !..!.!.||| ! !!:!!|||:!!|||||||||...|||||| ++AlaValHisIleAspAsnGlyValProLeuLeuLeuLysSerLeuLeuPheTyr 1401238 : aggCAGTACATATCGACAATGGAGTTCCTCTGTTACTCAaatctcttttattttat : 1401369 309 : ValValIleThrLeuGluAlaPheIlePheCysTyrAlaGlyGluTyrLeuSerAl : 327 ||||||||| !|||||||||||||||!:!|||!:!!.!||||||||||||||| ValValIleCysLeuGluAlaPheIleTyrCysPheValGlyGluTyrLeuSerIl 1401370 : gtgGTTATTTGTTTAGAAGCGTTTATATACTGCTTTGTCGGAGAATATCTCAGTAT : 1401426 328 : aLys >>>> Target Intron 2 >>>> SerArgMetIleGlyAspAlaAl : 336 !||| 1004 bp |||!:!:!:||||||:!!.!!|| eLys++ ++SerGlnLeuIleGlyAsnThrAl 1401427 : CAAGgt.........................agAGCCAACTAATCGGCAATACGGC : 1402457 337 : aTyrGluAlaLysTrpTyrAsnSerSerProLysGlnSerArgValLeuLeuLeuL : 355 ||||||| ! ||||||:!!! ! !! !!! :!!|||!:!:!!|||:!!! !: aTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSerGlnLeuLeuIleProV 1402458 : GTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAGCCAACTTCTAATACCTG : 1402514 356 : euIleLeuArgSerGlnArgLysLeuThrIleThrIleGlyLysPheMetAspLeu : 373 !!|||||||||||||||!:! !!!|||...|||...||||||||| ...||| alIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysPheSerSerLeu 1402515 : TAATATTGAGGTCTCAAAAGGGTTTCACGTttacttttggaaaattttcaagtctC : 1402568 374 : SerLeuGluArgPheThrThr >>>> Target Intron 3 >>>> IleIle : 382 |||||||||!!!||||||.!! 169 bp |||!!: SerLeuGluSerPheThrAla++ ++IleMet 1402569 : TCCTTGGAAAGCTTTACGGCCgt.........................agATCATG : 1402764 383 : LysAlaSerAlaSerTyrValSerValLeuHisAlaMet : 395 |||!.!||||||||||||:!!|||||||||! !|||:!! LysValSerAlaSerTyrIleSerValLeuLeuAlaVal 1402765 : AAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTG : 1402805 vulgar: CbirOr130 243 395 . KQ414716.1 1401093 1402805 + 368 M 47 141 5 0 2 I 0 79 3 0 2 M 38 114 5 0 2 I 0 1000 3 0 2 M 52 156 5 0 2 I 0 165 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401094 1402805 368 + . gene_id 2 ; sequence CbirOr130 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401094 1401234 . + . KQ414716.1 exonerate:protein2genome:local exon 1401094 1401234 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401235 1401236 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401235 1401317 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1401316 1401317 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1401318 1401431 . + . KQ414716.1 exonerate:protein2genome:local exon 1401318 1401431 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401432 1401433 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401432 1402435 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1402434 1402435 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402436 1402591 . + . KQ414716.1 exonerate:protein2genome:local exon 1402436 1402591 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1402592 1402593 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1402592 1402760 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1402759 1402760 . + . intron_id 2 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402761 1402805 . + . KQ414716.1 exonerate:protein2genome:local exon 1402761 1402805 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401094 1402805 368 + . alignment_id 2 ; Query CbirOr130 ; Align 1401094 244 141 ; Align 1401318 291 114 ; Align 1402436 329 156 ; Align 1402761 381 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr130 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 254 Query range: 213 -> 331 Target range: 1394161 -> 1394979 214 : IleLeuHisValGlyGlyGlnIleAspIleMetCysArgGlyLeuValGluIleSe : 232 |||!!!|||:!!||||||||||||!!:!!::!! !:!!.!|||......||||| IlePheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAsnIleSe 1394162 : ATATTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaatatttc : 1394216 233 : rSerGlyAspGlyMetPheAspLeuProAlaThrSerIleLysThrLeuIleHisA : 251 | |||! !! ! ||| !! !!.!!!!! !|||:!!|||||||||| rIleLysAspGluLysHisArgLeuSerArgAsnThrThrLysSerLeuIleHisA 1394217 : tattaaagATGAGAAACACAGATTATCGAGAAACACCACCAAATCATTAATTCACA : 1394273 252 : rgHisGlnArgIleIleAlaLeuSerAlaAspIleGluThrLeuPheSerTyrIle : 269 |||||!!.||||||||| ! !|||! !..!||||||!:!||||||||||||||| rgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIle 1394274 : GACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACATT : 1394327 270 : AlaLeuMetGlnPheMetTrpAsnThrSerValIleCysCysLeuGly{Ph} >> : 286 ||||||||||||!:::!:!! |||||| !||||||||||||:!!|||{||} AlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGly{Ph}-+ 1394328 : GCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGA{TT}ct.. : 1394382 287 : >> Target Intron 1 >>>> {e}LeuIleValThrSerIleGlyAspSerG : 296 464 bp {|}|||:::::: !:!!.!!..! ... +-{e}LeuLeuLeu***AlaPheAsnThrAspG 1394383 : .......................at{t}ttattgttgtaGGCATTTAATACAGatg : 1394872 297 : luGlySerThrMetLeuValLysSerLeuPhePheTyrValValIleThrLeuGlu : 314 ... ...:::|||:::|||.!!||||||:!!!.!||||||:!!||| lyAsnIleLysThrPheIleLysThrLeuLeuPheTyrIleAlaIleThrMetGlu 1394873 : gaaatataaaaacatttataaaaacattACTCTTTTACATCGCTATCACTATGGAA : 1394926 315 : AlaPheIlePheCysTyrAlaGlyGluTyrLeuSerAlaLysSerArgMet : 331 ||||||||||||! !!:!|||||||||||||||||| !||| !!!!||| AlaPheIlePheSerPheAlaGlyGluTyrLeuSerAsnLysValSerMet 1394927 : GCATTCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAAGTTAGTATG : 1394979 vulgar: CbirOr130 213 331 . KQ414716.1 1394161 1394979 + 254 M 72 216 S 0 2 5 0 2 I 0 460 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394162 1394979 254 + . gene_id 3 ; sequence CbirOr130 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394162 1394379 . + . KQ414716.1 exonerate:protein2genome:local exon 1394162 1394379 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394380 1394381 . + . intron_id 1 ; splice_site "CT" KQ414716.1 exonerate:protein2genome:local intron 1394380 1394843 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394842 1394843 . + . intron_id 0 ; splice_site "at" KQ414716.1 exonerate:protein2genome:local cds 1394844 1394979 . + . KQ414716.1 exonerate:protein2genome:local exon 1394844 1394979 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394162 1394979 254 + . alignment_id 3 ; Query CbirOr130 ; Align 1394162 214 216 ; Align 1394845 287 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr130 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 199 Query range: 242 -> 328 Target range: 1408285 -> 1408635 243 : ThrSerIleLysThrLeuIleHisArgHisGlnArgIleIleAlaLeuSerAlaAs : 261 |||..!:!:!:! !!!!||| !|||||||||!:!|||||| !!!!:!!! ! ThrGlnLeuArgPhePheIleSerArgHisGlnGlnIleIleIlePheAlaGluAr 1408286 : ACTCAACTGAGATTCTTCATCAGCAGACATCAACAGATCATCATATTTGCAGAGAG : 1408340 262 : pIleGluThrLeuPheSerTyrIleAlaLeuMetGlnPheMetTrpAsnThrSerV : 280 ||||||! !||||||!!!|||:!!||||||! |||.!!:!:! !|||||| !: gIleGluLysLeuPheThrTyrLeuAlaLeuSerGlnLeuLeuSerAsnThrLeuI 1408341 : AATAGAAAAACTGTTTACGTATCTAGCACTTAGTCAACTTCTCTCGAATACCCTAA : 1408397 281 : alIleCysCysLeuGlyPheLeuIleValThr >>>> Target Intron 1 > : 291 !!! !||||||:!!|||!:!:!!|||!.! ! 92 bp leThrCysCysValGlyTyrIleIleAlaPhe++ 1408398 : TTACTTGCTGCGTGGGTTATATTATCGCATTTgt...................... : 1408432 292 : >>> SerIleGlyAspSerGluGlySerThrMetLeuValLysSerLeuPhePhe : 307 :!!:!! !:!!!:!.!.|||! !! !||||||:!!|||! !:!! ! !:! ++AlaLeuGlnAsnAsnAsnGlyPheLysMetLeuIleLysPheValValTyr 1408433 : ...agGCACTACAAAATAATAATGGATTTAAAATGTTGATCAAATTTGTTGTATAT : 1408570 308 : TyrValValIleThrLeuGluAlaPheIlePheCysTyrAlaGlyGluTyrLeuSe : 326 |||:!!!.!:!: !! !||||||||||||!:!|||!:!|||||||||||||||!: TyrMetAlaValCysSerGluAlaPheIleTyrCysPheAlaGlyGluTyrLeuAs 1408571 : TACATGGCTGTGTGCTCAGAAGCGTTCATATACTGCTTTGCTGGAGAGTACCTTAA : 1408627 327 : rAlaLys : 328 ! !||| nIleLys 1408628 : TATCAAG : 1408635 vulgar: CbirOr130 242 328 . KQ414716.1 1408285 1408635 + 199 M 48 144 5 0 2 I 0 88 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408286 1408635 199 + . gene_id 4 ; sequence CbirOr130 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408286 1408429 . + . KQ414716.1 exonerate:protein2genome:local exon 1408286 1408429 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408430 1408431 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408430 1408521 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1408520 1408521 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1408522 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408522 1408635 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408286 1408635 199 + . alignment_id 4 ; Query CbirOr130 ; Align 1408286 243 144 ; Align 1408522 291 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr130 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 328 -> 395 Target range: 1395323 -> 1395911 329 : SerArgMetIleGlyAspAlaAlaTyrGluAlaLysTrpTyrAsnSerSerProLy : 347 |||! ! |||.!!:!!|||||||||...:!! |||||| ! !..!|||:! SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 348 : sGlnSerArgValLeuLeuLeuLeuIleLeuArgSerGlnArgLysLeuThrIleT : 366 !.!.!!!!.!:!!:!!:!!||||||!!::!!||||||||||||::!|||||||||| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 367 : hrIleGlyLysPheMetAspLeuSerLeuGlu{A} >>>> Target Intron : 377 || !|||||||||||||||||||||||||||{.} 387 bp hrAlaGlyLysPheMetAspLeuSerLeuGlu{G}++ 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAA{G}gt................... : 1395471 378 : 1 >>>> {rg}PheThrThrIleIleLysAlaSerAlaSerTyrValSerValLe : 392 {.!} |||:!!||||||||||||||||||:!!|||||||| --{lu}AsnPhe***IleLeuLysAlaSerAlaSerTyrIleSerValLe 1395472 : ......tt{aa}aatttttagatcTTAAAGGCTTCTGCATCGTACATATCTGTACT : 1395900 393 : uHisAlaMet : 395 |:!!|||||| uTyrAlaMet 1395901 : GTATGCGATG : 1395911 vulgar: CbirOr130 328 395 . KQ414716.1 1395323 1395911 + 155 M 48 144 S 0 1 5 0 2 I 0 383 3 0 2 S 1 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395911 155 + . gene_id 5 ; sequence CbirOr130 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1395324 1395468 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395468 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1395469 1395470 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1395469 1395855 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1395854 1395855 . + . intron_id 0 ; splice_site "tt" KQ414716.1 exonerate:protein2genome:local cds 1395856 1395911 . + . KQ414716.1 exonerate:protein2genome:local exon 1395856 1395911 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395911 155 + . alignment_id 5 ; Query CbirOr130 ; Align 1395324 329 144 ; Align 1395858 378 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr130 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 324 -> 381 Target range: 1409037 -> 1409208 325 : LeuSerAlaLysSerArgMetIleGlyAspAlaAlaTyrGluAlaLysTrpTyrAs : 343 :!!..! !:::|||::::::|||||||||.!!||||||||| ! |||||||| IleAspPheGlnSerLysLeuIleGlyAspThrAlaTyrGluPheLeuTrpTyrAs 1409038 : ATTGATTTTcagagtaaactgattggagACACGGCGTATGAATTTCTTTGGTATAA : 1409092 344 : nSerSerProLysGlnSerArgValLeuLeuLeuLeuIleLeuArgSerGlnArgL : 362 |! ! ! !!|||:!!||||||:!!:!!||||||:!!|||||||||||||||!:! nMetHisSerLysGluSerArgLeuMetLeuLeuValIleLeuArgSerGlnLysG 1409093 : TATGCATTCGAAGGAAAGCCGACTTATGTTGCTTGTAATACTACGATCACAGAAAG : 1409149 363 : ysLeuThrIleThrIleGlyLysPheMetAspLeuSerLeuGluArgPheThrThr : 380 !!!!|||...|||...||||||||| ...||||||:!!|||!!!|||.!! ! lyPheThrPheThrPheGlyLysPheAlaSerLeuSerMetGluSerPheAlaGly 1409150 : GATTTACtttcacttttggaaaatttgcaagtCTTTCCATGGAAAGTTTTGCAGGC : 1409203 381 : Ile : 381 :!! Val 1409204 : GTA : 1409208 vulgar: CbirOr130 324 381 . KQ414716.1 1409037 1409208 + 155 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1409038 1409208 155 + . gene_id 6 ; sequence CbirOr130 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1409038 1409208 . + . KQ414716.1 exonerate:protein2genome:local exon 1409038 1409208 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1409038 1409208 155 + . alignment_id 6 ; Query CbirOr130 ; Align 1409038 325 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr130 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 77 -> 214 Target range: 1391620 -> 1392022 78 : SerLeuLeuLeuLeuLysLeuThrIlePheTrpValAsnArgArgIlePheHisAs : 96 ......||||||::!|||! !||| ! :!! ! |||||||||...|| LysPheLeuLeuMetLysTyrThrArgGluIleIlePheCysArgIlePheGluAs 1391621 : aaattcttattaatGAAGTATACACGTGAGATAATATTTTgcagaatattcgaaaa : 1391675 97 : nIleLeuAsnThrMetAlaArgAspArgSer<->GluCysAlaThrAspTrpAlaG : 114 |:::||| !|||:!!!.!||| !!||| ...! :!!||| ! !::! ! nMetLeuValGlyMetSerAsnAspTrpSerAsnSerSerSerThrLysPheAspI 1391676 : tatgtTAGTGGGAATGTCTAACGATTGGAGTAATTCTTCATCAACGAAATTTGACA : 1391732 115 : lyTyrLeuMetSerArgThrValTyrValSerHisArgSerSerAsnLeuIleIle : 132 ! !! !|||! !!!!! !!.! ! :!!:!!:!!|||! !|||!!.:!!|||!!: leAsnAlaMetIleSerLysAlaGluLeuAlaTyrArgTyrSerLysValIleMet 1391733 : TAAACGCCATGATAAGTAAAGCTGAACTTGCGTATCGTTATTCGAAGGTAATTATG : 1391786 133 : GlyLeuTyrSerMetSerValIleLeuTyrGlyThrGlyValLeuIleAlaHisSe : 151 .!! !|||:!!!!::!!|||.!! !||| |||.!!|||!!!.!!! ! !! SerThrTyrAlaIleAlaValPheAlaTyr---ThrSerValPhePheGluPheMe 1391787 : AGCACATATGCTATTGCCGTTTTCGCTTAT---ACCAGCGTGTTTTTCGAGTTTAT : 1391840 152 : rAspGluProGluAspGluLeuAsnGluGlnLeuAlaValProThrArgGluLeuP : 170 ! !.!. !.!.||| ! :!!! !! !:!! !:!!|||||||||! tArgHisAspAsnAsp---------GlyGluTyrAspLeuLysSerArgGluLeuL 1391841 : GCGTCACGACAACGAC---------GGCGAATATGATTTAAAGTCTCGAGAACTTT : 1391888 171 : heLeuLysMetGluLeuProPheGluSerAsnAlaSerProValTyrGluValVal : 188 !.:!!||||||!!:|||||||||! !! ! !! !!!!|||..!|||:!! !||| euMetLysMetAspLeuProPheAlaTyrTyrLysThrProThrTyrGlnTrpVal 1391889 : TGATGAAAATGGACCTCCCGTTTGCGTATTACAAAACACCGACGTATCAATGGGTA : 1391942 189 : MetValThrGlnPhePheHisGlnLeuAlaAlaAlaThrIleValGlyValLeuAs : 207 .!.|||..!||||||.!!!!.! !||| ! !|||:!! !:!!|||:!!|||:! PheValValGlnPheLeuGlnLeuLeuIleAsnAlaSerAlaIleGlyMetLeuAs 1391943 : TTTGTTGTACAATTTCTTCAGCTGTTGATAAATGCATCTGCTATTGGTATGTTAGA : 1391999 208 : nAlaLeuIleValSerLeuIle : 214 !|||||||||:!!!!!|||:!! pAlaLeuIleIleThrLeuVal 1392000 : TGCTTTGATAATTACGTTGGTA : 1392022 vulgar: CbirOr130 77 214 . KQ414716.1 1391620 1392022 + 122 M 29 87 G 0 3 M 36 108 G 1 0 M 13 39 G 3 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1391621 1392022 122 + . gene_id 7 ; sequence CbirOr130 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1391621 1392022 . + . KQ414716.1 exonerate:protein2genome:local exon 1391621 1392022 . + . insertions 3 ; deletions 4 KQ414716.1 exonerate:protein2genome:local similarity 1391621 1392022 122 + . alignment_id 7 ; Query CbirOr130 ; Align 1391621 78 87 ; Align 1391711 107 108 ; Align 1391819 144 39 ; Align 1391858 160 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr130 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 162 -> 214 Target range: 1398802 -> 1398958 163 : AlaValProThrArgGluLeuPheLeuLysMetGluLeuProPheGluSerAsnAl : 181 ||| ! !:!!|||||||||.!!:!!||||||!!:||||||||||||!!!!:!! AlaSerValSerArgGluLeuLeuMetLysMetAspLeuProPheGluThrSerGl 1398803 : GCTTCAGTATCTCGGGAGCTCCTTATGAAAATGGATTTGCCTTTCGAGACCAGCGA : 1398857 182 : aSerProValTyrGluValValMetValThrGlnPhePheHisGlnLeuAlaAlaA : 200 !|||||| !||||||:!!|||:!:..!|||||| !!.!! !!!.|||:!!!.!| uSerProAsnTyrGluLeuValValThrThrGlnValLeuIleHisLeuSerValA 1398858 : ATCGCCGAATTACGAACTTGTAGTAACTACACAGGTCCTTATTCACTTATCAGTGG : 1398914 201 : laThrIleValGlyValLeuAsnAlaLeuIleValSerLeuIle : 214 ||..! ! !|||!.!!!!|||||||||:!!:!!! !:!!:!! laValAlaTyrGlyAlaPheAsnAlaLeuLeuLeuMetValVal 1398915 : CCGTAGCATACGGTGCATTCAATGCTCTTCTCTTAATGGTGGTA : 1398958 vulgar: CbirOr130 162 214 . KQ414716.1 1398802 1398958 + 117 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1398803 1398958 117 + . gene_id 8 ; sequence CbirOr130 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1398803 1398958 . + . KQ414716.1 exonerate:protein2genome:local exon 1398803 1398958 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1398803 1398958 117 + . alignment_id 8 ; Query CbirOr130 ; Align 1398803 163 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr130 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 166 -> 214 Target range: 1405956 -> 1406100 167 : ArgGluLeuPheLeuLysMetGluLeuProPheGluSerAsnAlaSerProValTy : 185 |||||||||!!.:!!||||||!!:|||||||||.!.!!!||| !||||||:!!|| ArgGluLeuLeuIleLysMetAspLeuProPheAsnThrAsnAsnSerProIleTy 1405957 : CGAGAACTTTTGATAAAAATGGACTTGCCATTTAATACGAACAATTCGCCTATTTA : 1406011 186 : rGluValValMetValThrGlnPhePheHisGlnLeuAlaAlaAlaThrIleValG : 204 ||||:!!|||!!:||| !|||!:!.!. !:!!:!!:!!.!!||| !! !!| rGluLeuValIleValLeuGlnTyrLeuCysLysValSerThrAlaPheThrPheG 1406012 : CGAGCTGGTAATAGTTTTACAATACCTATGCAAAGTATCGACAGCTTTTACGTTTG : 1406068 205 : lyValLeuAsnAlaLeuIleValSerLeuIle : 214 |||||!!!!:!::!|||:!!:!!! !:!!:!! lyValPheSerSerLeuLeuLeuMetMetVal 1406069 : GTGTATTCAGCAGTCTGCTTTTGATGATGGTA : 1406100 vulgar: CbirOr130 166 214 . KQ414716.1 1405956 1406100 + 116 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1405957 1406100 116 + . gene_id 9 ; sequence CbirOr130 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1405957 1406100 . + . KQ414716.1 exonerate:protein2genome:local exon 1405957 1406100 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1405957 1406100 116 + . alignment_id 9 ; Query CbirOr130 ; Align 1405957 167 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr137 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 369 Query range: 232 -> 386 Target range: 1401087 -> 1402805 233 : GlyIleThrMetLysAsnLeuIleGlyLysHisGlnLysIleIleLeuPheThrGl : 251 ||| :::||| ...|||..!!:!||||||:!!||||||:!!|||.!!|| GlyLysGlnIleLysPhePheIleAsnArgHisGlnGluIleIleValPheAlaGl 1401088 : ggaaaacaaataaaattcttcattaACAGACATCAGGAAATTATTGTTTTTGCAGA : 1401142 252 : uAsnIleGluAsnLeuTyrCysTyrIleAlaLeuMetGlnPheValSerAsnThrL : 270 |!..||||||!!.|||!:! |||!!:||||||! |||.!!||||||||||||: uArgIleGluLysLeuPheThrTyrMetAlaLeuSerGlnLeuValSerAsnThrI 1401143 : AAGAATTGAGAAACTTTTTACATACATGGCTCTCAGTCAACTTGTGTCCAATACGA : 1401199 271 : euIleIleCysSerIleGlyPheValIleValMet >>>> Target Intron : 282 !!|||||||||!!!:!!||||||:!!:!!|||!!: 83 bp leIleIleCysCysValGlyPheLeuValValIle++ 1401200 : TAATTATATGTTGCGTAGGATTTCTCGTTGTAATTgt................... : 1401237 283 : 1 >>>> SerMetHisSerProAspMetSerThrMetLeuValLysThrLeuLeu : 297 :!!:!:|||! ! !:!! ! !!:!!|||:!!|||:::|||||| ++AlaValHisIleAspAsnGlyValProLeuLeuLeuLysSerLeuLeu 1401238 : ......aggCAGTACATATCGACAATGGAGTTCCTCTGTTACTCAaatctctttta : 1401363 298 : PheTyrIleValMetAsnLeuGluAlaPheIlePheCysPheAlaGlyAspTyrLe : 316 ||||||:::|||!!: !|||||||||||||||!:!||||||!.!|||!!:||||| PheTyrValValIleCysLeuGluAlaPheIleTyrCysPheValGlyGluTyrLe 1401364 : ttttatgtgGTTATTTGTTTAGAAGCGTTTATATACTGCTTTGTCGGAGAATATCT : 1401420 317 : uSerThrLys >>>> Target Intron 2 >>>> SerGlnHisIleAlaAs : 325 ||||! !||| 1004 bp ||||||! |||!.!:! uSerIleLys++ ++SerGlnLeuIleGlyAs 1401421 : CAGTATCAAGgt.........................agAGCCAACTAATCGGCAA : 1402451 326 : pAlaAlaTyrArgSerLeuTrpTyrAsnMetThrValAsnGluSerArgThrIleS : 344 !.!!||||||..!! !|||||||||:!!:!: ! !!.!||||||!:! !:!!! nThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSerGlnLeuLeuI 1402452 : TACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAGCCAACTTCTAA : 1402508 345 : erPheLeuIleIleArgSerGlnLysArgLeuThrIleThrIleGlyLysIleMet : 362 ! !:!!|||:!:|||||||||||| !!!!!|||...|||...||||||... leProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysPheSer 1402509 : TACCTGTAATATTGAGGTCTCAAAAGGGTTTCACGTttacttttggaaaattttca : 1402562 363 : AspLeuSerLeuGluArgPheThrSer >>>> Target Intron 3 >>>> : 372 ...||||||||||||!!!||||||:!! 169 bp SerLeuSerLeuGluSerPheThrAla++ ++ 1402563 : agtctCTCCTTGGAAAGCTTTACGGCCgt.........................ag : 1402759 373 : ValIleLysAlaSerAlaSerTyrIleSerValLeuMetAlaIle : 386 :!!!!:|||!.!||||||||||||||||||||||||:!:|||:!: IleMetLysValSerAlaSerTyrIleSerValLeuLeuAlaVal 1402760 : ATCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTG : 1402805 vulgar: CbirOr137 232 386 . KQ414716.1 1401087 1402805 + 369 M 49 147 5 0 2 I 0 79 3 0 2 M 38 114 5 0 2 I 0 1000 3 0 2 M 52 156 5 0 2 I 0 165 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401088 1402805 369 + . gene_id 1 ; sequence CbirOr137 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401088 1401234 . + . KQ414716.1 exonerate:protein2genome:local exon 1401088 1401234 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401235 1401236 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401235 1401317 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1401316 1401317 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1401318 1401431 . + . KQ414716.1 exonerate:protein2genome:local exon 1401318 1401431 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401432 1401433 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401432 1402435 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1402434 1402435 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402436 1402591 . + . KQ414716.1 exonerate:protein2genome:local exon 1402436 1402591 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1402592 1402593 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1402592 1402760 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1402759 1402760 . + . intron_id 2 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402761 1402805 . + . KQ414716.1 exonerate:protein2genome:local exon 1402761 1402805 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401088 1402805 369 + . alignment_id 1 ; Query CbirOr137 ; Align 1401088 233 147 ; Align 1401318 282 114 ; Align 1402436 320 156 ; Align 1402761 372 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr137 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 357 Query range: 0 -> 205 Target range: 1390523 -> 1392022 1 : MetThrAsnThrSerThrIleCysPheSerIleLysPheValLeuLeuValPheGl : 19 |||:!!:!!!.!!.!!:!||| !! ! !!:!::!!.!!! !||| !:!! !|| MetSerHisAsnLysSerIleSerArgProValGluIleGlyLeuArgLeuThrGl 1390524 : ATGTCGCATAACAAAAGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGG : 1390578 20 : yIleTrpProGlyValSerCysValIleLeuHisArgLeuPheTrpSerSerThrL : 38 ||||||||||||| !|||! !! !|||:!! !|||:!! !|||! !! ! !: yIleTrpProGlySerSerTyrGluIleIleValArgValThrTrpIleIleLeuM 1390579 : AATTTGGCCAGGTTCATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTA : 1390635 39 : euIleIleThrGlnIlePheGlnTyrAlaTyrPheIleLeuHisPheHisThrAsp : 56 !!! !:!!..!||||||||||||||| !|||.!.||| !|||.!! !! !..! etThrValValGlnIlePheGlnTyrArgTyrIleIleLysHisLeuAspGlySer 1390636 : TGACAGTTGTACAAATATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGT : 1390689 57 : AsnLeuSerAspLeuMetAspAsnLeuSerCysAlaLeuAlaTyrSerLeuLeuPh : 75 ||||||:!!:!!|||!!:|||!:!:!!.!! !.!!||| !!||||||||||||!: AsnLeuAlaAsnLeuIleAspSerValGlyThrThrLeuProTyrSerLeuLeuTy 1390690 : AATCTGGCGAACTTAATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTA : 1390746 76 : ePheLysLeuIleIlePheTrpThrAsnGln{Ar} >>>> Target Intron : 86 ! |||||||||||||||||||||!!.!::{ !} 884 bp rValLysLeuIleIlePheTrpThrLysArg{Gl}++ 1390747 : TgtcaaattaattattttctggaCTAAACGT{GG}gt................... : 1390783 87 : 1 >>>> {g}LysPheArgAspIleLeuLysThrIleAlaAlaAspTrpLysAsp : 101 {!} |||...::::::||| ! !!!::!! !||||||!..:!! ++{y}IlePheGluAsnMetLeuValGlyMetSerAsnAspTrpSerAsn 1390784 : ......ag{a}atattcgaaaatatgtTAGTGGGAATGTCTAACGATTGGAGTAAT : 1391708 102 : CysAlaSerAspProPheSerLeuHisValThrThrSerAlaAlaAsnLeuSerHi : 120 ! !:!!||| !|||..!:!!:!!!.!! !! !||| !|||.!.|||:!!:! SerSerSerThrLysPheAspIleAsnAlaMetIleSerLysAlaGluLeuAlaTy 1391709 : TCTTCATCAACGAAATTTGACATAAACGCCATGATAAGTAAAGCTGAACTTGCGTA : 1391765 121 : sArgIleSerAsnMetIleIleGlyLeuHisMetAlaAlaValValThrTyrSerP : 139 !||| !|||!!.:!:|||!!:.!! !:!! !|||||| !!.!!|||!!! rArgTyrSerLysValIleMetSerThrTyrAlaIleAlaValPheAlaTyrThrS 1391766 : TCGTTATTCGAAGGTAATTATGAGCACATATGCTATTGCCGTTTTCGCTTATACCA : 1391822 140 : heGlyValLeuSerSerAsnGlyAspAspAsnPheAsnAlaSerThrValLeuAsp : 157 !! ! !!!!!..!! !! !! !!|||||| !..!! !! ! !:!! !..! erValPhePheGluPheMetArgHisAspAsnAspGlyGluTyrAspLeuLysSer 1391823 : GCGTGTTTTTCGAGTTTATGCGTCACGACAACGACGGCGAATATGATTTAAAGTCT : 1391876 158 : ArgAlaLeuIleLeuArgMetAspPheProPheAspSerAsnSerSerProIleTy : 176 |||! !|||:!::!!!:!||||||.!!||||||! ! ! !!!.!!!!|||! || ArgGluLeuLeuMetLysMetAspLeuProPheAlaTyrTyrLysThrProThrTy 1391877 : CGAGAACTTTTGATGAAAATGGACCTCCCGTTTGCGTATTACAAAACACCGACGTA : 1391933 177 : rGluIleValMetValIleGlnPhePheGlnLeuValThrHisAlaCysAlaIleA : 195 |:!! |||.!.|||:!!||||||.!!||||||:!!! !:!!|||! !||||||! rGlnTrpValPheValValGlnPheLeuGlnLeuLeuIleAsnAlaSerAlaIleG 1391934 : TCAATGGGTATTTGTTGTACAATTTCTTCAGCTGTTGATAAATGCATCTGCTATTG : 1391990 196 : spValLeuAsnAlaLeuIleIleThrLeuIle : 205 !:!!|||:!!||||||||||||||||||:!! lyMetLeuAspAlaLeuIleIleThrLeuVal 1391991 : GTATGTTAGATGCTTTGATAATTACGTTGGTA : 1392022 vulgar: CbirOr137 0 205 . KQ414716.1 1390523 1392022 + 357 M 85 255 S 0 2 5 0 2 I 0 880 3 0 2 S 1 1 M 119 357 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390524 1392022 357 + . gene_id 2 ; sequence CbirOr137 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1390524 1390780 . + . KQ414716.1 exonerate:protein2genome:local exon 1390524 1390780 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1390781 1390782 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1390781 1391664 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1391663 1391664 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1391665 1392022 . + . KQ414716.1 exonerate:protein2genome:local exon 1391665 1392022 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390524 1392022 357 + . alignment_id 2 ; Query CbirOr137 ; Align 1390524 1 255 ; Align 1391666 87 357 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr137 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 299 Query range: 84 -> 280 Target range: 1386354 -> 1387338 85 : GlnArgLysPheArgAspIleLeuLysThrIleAlaAlaAspTrpLysAspCysAl : 103 .!.|||! !||| !! !||||||! !|||:!! !! !|||!! !!.:!!! !|| AsnArgThrPheTyrGlyIleLeuThrThrValPheGluAspCysAsnAsnTyrAl 1386355 : AACAGAACATTTTATGGCATTCTGACAACCGTATTCGAGGACTGCAATAATTATGC : 1386409 104 : aSerAspProPheSerLeuHisValThrThrSerAlaAlaAsnLeuSerHisArgI : 122 |||| ::: ...::: |||..! !|||! |||||| !|||| aSerThrValGluAsnLysArgIleMetThrAspLysAlaMetLeuSerSerArgI 1386410 : TTCTAccgttgaaaataaacgaataatgACAGATAAAGCTATGTTGTCTTCTCGta : 1386466 123 : leSerAsnMetIleIleGlyLeuHisMetAlaAlaValValThrTyrSerPheGly : 140 ||||||||...:::|||||| ! ! ! !.!! !!:!!..!|||||| ||| leSerAsnPheLeuIleGlyTyrPheSerIleThrPheLeuValTyrSer---Gly 1386467 : tctcaaattttttaattggctATTTTTCGATCACGTTCCTTGTATATTCA---GGA : 1386517 141 : ValLeuSerSerAsnGlyAspAspAsnPheAsnAlaSerThrValLeuAspArgAl : 159 :!! ! ! ! !|||!!::!! |||!.! !!..! ! ...||| LeuAlaLeuValLeuPheAspGluAspGlnAsnGlyProValSerLysGlnArgLy 1386518 : CTTGCTCTAGTATTATTTGATGAAGATCAGAATGGACCGGTTTCCAaacaaaggaa : 1386574 160 : aLeuIleLeuArgMetAspPheProPheAspSerAsnSerSerProIleTyrGluI : 178 ...::::::||||||:!:|||||||||!!::!!!.. !|||||| ||||||| sPheLeuIleArgMetGluPheProPheGluAlaThrValSerProArgTyrGluI 1386575 : atttttaattagaatggAATTTCCTTTCGAAGCTACAGTCTCTCCACgttatgaaa : 1386631 179 : leValMetValIleGlnPhePheGlnLeuValThrHisAlaCysAlaIleAspVal : 196 ||::::::|||:::||||||... ..! ! !.!! !!.! !! !..! leIleLeuValValGlnPheIlePheGluAlaPheIleValTyrGlyAlaAlaThr 1386632 : ttattctagttgtacaatttatattcgaagcATTTATAGTTTATGGAGCAGCTACA : 1386685 197 : LeuAsnAlaLeuIleIleThrLeu >>>> Target Intron 1 >>>> Ile : 205 ! !! ||||||||| !..!||| 399 bp ||| SerIleAlaLeuIleAlaValLeu++ ++Ile 1386686 : TCGATAGCCCTAATTGCAGTACTAgt.........................agATA : 1387111 206 : LeuHisThrGlyGlyGlnIleAspIleLeuArgGluTrpLeuThrAsnValPheSe : 224 ||||||..!|||||||||||||||:!!||| !!:!! :!!! !:!!:!!! ! ! LeuHisValGlyGlyGlnIleAspLeuLeuCysGlnAsnMetArgAspIleSerAr 1387112 : TTACATGTTGGTGGTCAGATCGATTTATTGTGTCAAAACATGAGAGACATTTCTCG : 1387168 225 : rLysGluSerMetHisGlyMetThrGlyIleThrMetLysAsnLeuIleGlyLysH : 243 !!!..!...!! ! ! ! ! ! ! !:!:|||!!:|||:!!:!!:!!! !!:!| gAsnHisGluLysLysValProGlnLysLeuThrIleLysAspValValValArgH 1387169 : TAATCATGAGAAGAAAGTACCGCAAAAACTGACAATAAAGGATGTCGTTGTTAGGC : 1387225 244 : isGlnLysIleIleLeuPheThrGluAsnIleGluAsnLeuTyrCysTyrIleAla : 261 |||||::!||||||! !.!.:!!:!!|||||||||!..:!!!:! !||||||:!! isGlnArgIleIleArgLeuSerLysAsnIleGluThrValPheThrTyrIleSer 1387226 : ATCAACGAATTATACGACTGTCTAAAAATATCGAGACAGTTTTTACTTATATATCA : 1387279 262 : LeuMetGlnPheValSerAsnThrLeuIleIleCysSerIleGlyPheValIleVa : 280 ||| ||||||:::|||||| |||:!!||||||! !|||.!!||||||:!:|| LeuCysGlnPheLeuSerAsnMetLeuValIleCysPheIleSerPheValLeuVa 1387280 : TTATgccaatttttatcgaatatgcTGGTTATCTGTTTCATAAGCTTCGTTTTGGT : 1387336 281 : l : 280 | l 1387337 : A : 1387338 vulgar: CbirOr137 84 280 . KQ414716.1 1386354 1387338 + 299 M 54 162 G 1 0 M 65 195 5 0 2 I 0 395 3 0 2 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1386355 1387338 299 + . gene_id 3 ; sequence CbirOr137 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1386355 1386711 . + . KQ414716.1 exonerate:protein2genome:local exon 1386355 1386711 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local splice5 1386712 1386713 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1386712 1387110 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387109 1387110 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387111 1387338 . + . KQ414716.1 exonerate:protein2genome:local exon 1387111 1387338 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1386355 1387338 299 + . alignment_id 3 ; Query CbirOr137 ; Align 1386355 85 162 ; Align 1386517 140 195 ; Align 1387111 205 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr137 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 252 Query range: 291 -> 386 Target range: 1394886 -> 1395911 292 : LeuValLysThrLeuLeuPheTyrIleValMetAsnLeuGluAlaPheIlePheCy : 310 ...:::|||||||||||||||||||||!.!!!:!.!:!!|||||||||||||||! PheIleLysThrLeuLeuPheTyrIleAlaIleThrMetGluAlaPheIlePheSe 1394887 : tttataaaaacattACTCTTTTACATCGCTATCACTATGGAAGCATTCATCTTCTC : 1394941 311 : sPheAlaGlyAspTyrLeuSerThrLys >>>> Target Intron 1 >>>> : 320 !|||||||||!!:|||||||||!.!||| 353 bp rPheAlaGlyGluTyrLeuSerAsnLys++ + 1394942 : CTTTGCCGGAGAATATCTCAGTAACAAAgt.........................a : 1395322 321 : SerGlnHisIleAlaAspAlaAlaTyrArgSerLeuTrpTyrAsnMetThrValA : 338 |||! ! |||::!:!!|||||||||!!!|||! !|||||| !:!! ! !. +SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProG 1395323 : gAGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTC : 1395378 339 : snGluSerArgThrIleSerPheLeuIleIleArgSerGlnLysArgLeuThrIle : 356 !.!!:!!!!.!! !|||! !.!!|||!!:||||||||||||!:!|||||||||||| lnAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIle 1395379 : AAGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATC : 1395432 357 : ThrIleGlyLysIleMetAspLeuSerLeuGluArgPheThrSer >>>> Targ : 372 ||| !||||||.!!|||||||||||||||||| !!|||.!!!:! ThrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsn++ 1395433 : ACCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATgt......... : 1395482 373 : et Intron 2 >>>> ValIleLysAlaSerAlaSerTyrIleSerValLeuMe : 384 387 bp ::::!!|||||||||||||||||||||||||||||| ++IleLeuLysAlaSerAlaSerTyrIleSerValLeuTy 1395483 : ................agatcTTAAAGGCTTCTGCATCGTACATATCTGTACTGTA : 1395903 385 : tAlaIle : 386 |||!!: rAlaMet 1395904 : TGCGATG : 1395911 vulgar: CbirOr137 291 386 . KQ414716.1 1394886 1395911 + 252 M 28 84 5 0 2 I 0 349 3 0 2 M 52 156 5 0 2 I 0 383 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394887 1395911 252 + . gene_id 4 ; sequence CbirOr137 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394887 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394887 1394970 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394971 1394972 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394971 1395323 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1395322 1395323 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1395324 1395479 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395479 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1395480 1395481 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1395480 1395866 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1395865 1395866 . + . intron_id 1 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1395867 1395911 . + . KQ414716.1 exonerate:protein2genome:local exon 1395867 1395911 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394887 1395911 252 + . alignment_id 4 ; Query CbirOr137 ; Align 1394887 292 84 ; Align 1395324 320 156 ; Align 1395867 372 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr137 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 203 Query range: 204 -> 281 Target range: 1394161 -> 1394392 205 : IleLeuHisThrGlyGlyGlnIleAspIleLeuArgGluTrpLeuThrAsnValPh : 223 |||!!!|||! !||||||||||||!!:!!:|||!:!:!! |||||||||::: IlePheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAsnIleSe 1394162 : ATATTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaatatttc : 1394216 224 : eSerLysGluSerMetHisGlyMetThrGlyIleThrMetLysAsnLeuIleGlyL : 242 |||:!:..!! ||| !!:!::!! !!! !|||! |||:::|||||| !! rIleLysAspGluLysHisArgLeuSerArgAsnThrThrLysSerLeuIleHisA 1394217 : tattaaagATGAGAAACACAGATTATCGAGAAACACCACCAAATCATTAATTCACA : 1394273 243 : ysHisGlnLysIleIleLeuPheThrGluAsnIleGluAsnLeuTyrCysTyrIle : 260 :!|||!!.::!||||||:!! !:!!!!:::!||||||!:!|||!:!! |||||| rgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIle 1394274 : GACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACATT : 1394327 261 : AlaLeuMetGlnPheValSerAsnThrLeuIleIleCysSerIleGlyPheValIl : 279 ||||||||||||!:::!!!!!|||||||||:!!||||||!!!|||||||||:!!|| AlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGlyPheLeuIl 1394328 : GCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGATTCTTAAT : 1394384 280 : eValMet : 281 ||||!!: eValIle 1394385 : AGTAATT : 1394392 vulgar: CbirOr137 204 281 . KQ414716.1 1394161 1394392 + 203 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394162 1394392 203 + . gene_id 5 ; sequence CbirOr137 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1394162 1394392 . + . KQ414716.1 exonerate:protein2genome:local exon 1394162 1394392 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394162 1394392 203 + . alignment_id 5 ; Query CbirOr137 ; Align 1394162 205 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr137 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 235 -> 319 Target range: 1408291 -> 1408635 236 : MetLysAsnLeuIleGlyLysHisGlnLysIleIleLeuPheThrGluAsnIleGl : 254 :!!!:! !!!!|||.!!!:!||||||:!!||||||:!!|||.!!|||!..||||| LeuArgPhePheIleSerArgHisGlnGlnIleIleIlePheAlaGluArgIleGl 1408292 : CTGAGATTCTTCATCAGCAGACATCAACAGATCATCATATTTGCAGAGAGAATAGA : 1408346 255 : uAsnLeuTyrCysTyrIleAlaLeuMetGlnPheValSerAsnThrLeuIleIleC : 273 |!!.|||!:! |||:!!||||||! |||.!!:!!|||||||||||||||! !| uLysLeuPheThrTyrLeuAlaLeuSerGlnLeuLeuSerAsnThrLeuIleThrC 1408347 : AAAACTGTTTACGTATCTAGCACTTAGTCAACTTCTCTCGAATACCCTAATTACTT : 1408403 274 : ys{Se} >>>> Target Intron 1 >>>> {r}IleGlyPheValIleVal : 280 ||{!!} 92 bp {!} !..! !:!!! :!! ys{**}-- ++{*}***SerAsnLeuThrLeu 1408404 : GC{TG}cg.........................ag{A}TGATCGAATTTAACGTTA : 1408516 281 : MetSerMetHisSerProAspMetSerThrMetLeuValLysThrLeuLeuPheTy : 299 ..!:!!:!:!!.!:! !:!! ! !! !||||||:!!||| !:!!:!!!:!|| GlnAlaLeuGlnAsnAsnAsnGlyPheLysMetLeuIleLysPheValValTyrTy 1408517 : CAGGCACTACAAAATAATAATGGATTTAAAATGTTGATCAAATTTGTTGTATATTA : 1408573 300 : rIleValMetAsnLeuGluAlaPheIlePheCysPheAlaGlyAspTyrLeuSerT : 318 |!!:!.!:!! !! !||||||||||||!:!||||||||||||!!:||||||!:!! rMetAlaValCysSerGluAlaPheIleTyrCysPheAlaGlyGluTyrLeuAsnI 1408574 : CATGGCTGTGTGCTCAGAAGCGTTCATATACTGCTTTGCTGGAGAGTACCTTAATA : 1408630 319 : hrLys : 319 !||| leLys 1408631 : TCAAG : 1408635 vulgar: CbirOr137 235 319 . KQ414716.1 1408291 1408635 + 150 M 38 114 S 0 2 5 0 2 I 0 88 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408292 1408635 150 + . gene_id 6 ; sequence CbirOr137 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408292 1408407 . + . KQ414716.1 exonerate:protein2genome:local exon 1408292 1408407 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408408 1408409 . + . intron_id 1 ; splice_site "CG" KQ414716.1 exonerate:protein2genome:local intron 1408408 1408499 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1408498 1408499 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1408500 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408500 1408635 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408292 1408635 150 + . alignment_id 6 ; Query CbirOr137 ; Align 1408292 236 114 ; Align 1408501 275 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr137 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 319 -> 386 Target range: 1387619 -> 1387955 320 : SerGlnHisIleAlaAspAlaAlaTyrArgSerLeuTrpTyrAsnMetThrValAs : 338 |||:!!!.!|||.!!.!.:!:...|||... |||||||||:!!:!:! ! !.. SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 339 : nGluSerArgThrIleSerPheLeuIleIleArgSerGlnLysArgLeuThrIleT : 357 .|||:!!||| ::: ...:::|||:::||||||||||||..!|||! !:!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 358 : hrIleGlyLysIleMetAspLeuSerLeuGluArgPheThrSer >>>> Targe : 372 || ||||||.!!:!!:!!|||||||||! !|||.!!!:: hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt.......... : 1387778 373 : t Intron 1 >>>> ValIleLysAlaSerAlaSerTyrIleSerValLeuMet : 384 135 bp ::::!!||||||||||||||||||:!!||||||||| ++MetLeuLysAlaSerAlaSerTyrValSerValLeuHis 1387779 : ...............agatgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTTGCAT : 1387947 385 : AlaIle : 386 |||!!: AlaMet 1387948 : GCAATG : 1387955 vulgar: CbirOr137 319 386 . KQ414716.1 1387619 1387955 + 148 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387955 148 + . gene_id 7 ; sequence CbirOr137 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387955 148 + . alignment_id 7 ; Query CbirOr137 ; Align 1387620 320 156 ; Align 1387911 372 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr137 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 313 -> 372 Target range: 1409031 -> 1409208 314 : AspTyrLeuSerThrLysSerGlnHisIleAlaAspAlaAlaTyrArgSerLeuTr : 332 :!! !:!!..! !:::|||::: |||...|||.!!||||||..!! !||||| AsnIleIleAspPheGlnSerLysLeuIleGlyAspThrAlaTyrGluPheLeuTr 1409032 : AATATCATTGATTTTcagagtaaactgattggagACACGGCGTATGAATTTCTTTG : 1409086 333 : pTyrAsnMetThrValAsnGluSerArgThrIleSerPheLeuIleIleArgSerG : 351 |||||||||| ! !!!.||||||||| !!!:! !.!!:!!|||:!!||||||| pTyrAsnMetHisSerLysGluSerArgLeuMetLeuLeuValIleLeuArgSerG 1409087 : GTATAATATGCATTCGAAGGAAAGCCGACTTATGTTGCTTGTAATACTACGATCAC : 1409143 352 : lnLysArgLeuThrIleThrIleGlyLysIleMetAspLeuSerLeuGluArgPhe : 369 ||||| !!!!!|||...|||...||||||... ...||||||:!!|||!!!||| lnLysGlyPheThrPheThrPheGlyLysPheAlaSerLeuSerMetGluSerPhe 1409144 : AGAAAGGATTTACtttcacttttggaaaatttgcaagtCTTTCCATGGAAAGTTTT : 1409197 370 : ThrSerVal : 372 .!!.!!||| AlaGlyVal 1409198 : GCAGGCGTA : 1409208 vulgar: CbirOr137 313 372 . KQ414716.1 1409031 1409208 + 131 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1409032 1409208 131 + . gene_id 8 ; sequence CbirOr137 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1409032 1409208 . + . KQ414716.1 exonerate:protein2genome:local exon 1409032 1409208 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1409032 1409208 131 + . alignment_id 8 ; Query CbirOr137 ; Align 1409032 314 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr137 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 157 -> 205 Target range: 1405956 -> 1406100 158 : ArgAlaLeuIleLeuArgMetAspPheProPheAspSerAsnSerSerProIleTy : 176 |||! !|||:!::!!!:!||||||!!.||||||:!!!!!|||!:!||||||||||| ArgGluLeuLeuIleLysMetAspLeuProPheAsnThrAsnAsnSerProIleTy 1405957 : CGAGAACTTTTGATAAAAATGGACTTGCCATTTAATACGAACAATTCGCCTATTTA : 1406011 177 : rGluIleValMetValIleGlnPhePheGlnLeuValThrHisAlaCysAlaIleA : 195 ||||:!:|||!!:|||:!!|||!:!.!. !|||:!! |||! !.!!.!!! rGluLeuValIleValLeuGlnTyrLeuCysLysValSerThrAlaPheThrPheG 1406012 : CGAGCTGGTAATAGTTTTACAATACCTATGCAAAGTATCGACAGCTTTTACGTTTG : 1406068 196 : spValLeuAsnAlaLeuIleIleThrLeuIle : 205 !|||!!!!:!::!|||:!!:!:! !:!!:!! lyValPheSerSerLeuLeuLeuMetMetVal 1406069 : GTGTATTCAGCAGTCTGCTTTTGATGATGGTA : 1406100 vulgar: CbirOr137 157 205 . KQ414716.1 1405956 1406100 + 112 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1405957 1406100 112 + . gene_id 9 ; sequence CbirOr137 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1405957 1406100 . + . KQ414716.1 exonerate:protein2genome:local exon 1405957 1406100 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1405957 1406100 112 + . alignment_id 9 ; Query CbirOr137 ; Align 1405957 158 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr124 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 422 Query range: 210 -> 393 Target range: 1394161 -> 1395914 211 : ValLeuHisValSerGlyGlnIleAspIleMetGlnGlnAsnLeuIleGluIleSe : 229 :!!!!!|||:!!.!!|||||||||!!:!!::!!|||:!! !||| ...||||| IlePheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAsnIleSe 1394162 : ATATTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaatatttc : 1394216 230 : rAsnLysLysTyrAspArgSerIlePheLeuAlaValIleLysThrPheIleTyrL : 248 | ||| ! ! ! !.!!!!:!!! ! !..!! !|||:!!!!.|||:!!! rIleLysAspGluLysHisArgLeuSerArgAsnThrThrLysSerLeuIleHisA 1394217 : tattaaagATGAGAAACACAGATTATCGAGAAACACCACCAAATCATTAATTCACA : 1394273 249 : ysHisGlnArgIleIleIleLeuSerGluAsnIleGluAsnLeuPheThrHisIle : 266 :!|||!!.|||||||||||| !|||!!:::!||||||!:!||||||:!!:!!||| rgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIle 1394274 : GACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACATT : 1394327 267 : AlaLeuValGlnIleLeuTrpAsnThrValValMetCysCysThrGlyPheValIl : 285 ||||||:!!||| |||!! ||||||:!!|||!!:||||||! !||||||:!!|| AlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGlyPheLeuIl 1394328 : GCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGATTCTTAAT : 1394384 286 : eIleIle >>>> Target Intron 1 >>>> MetIleAspAsnGlyGluGl : 294 |:!!||| 464 bp .!!:!!!..! .. eValIle++ ++AlaPheAsnThrAspGlyAs 1394385 : AGTAATTgt.........................agGCATTTAATACAGatggaaa : 1394875 295 : yValIleGlyLeuIleLysProValSerTyrTyrPheAlaIleThrLeuGluAlaP : 313 .::: ...|||||| ::! !!:!|||.!!|||||||||:!!||||||| nIleLysThrPheIleLysThrLeuLeuPheTyrIleAlaIleThrMetGluAlaP 1394876 : tataaaaacatttataaaaacattACTCTTTTACATCGCTATCACTATGGAAGCAT : 1394932 314 : heValPheCysPheAlaGlyGluPheLeuSerAlaLys >>>> Target Intr : 326 ||:!!|||! !||||||||||||!:!|||||| !||| 353 bp heIlePheSerPheAlaGlyGluTyrLeuSerAsnLys++ 1394933 : TCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAAgt................ : 1394973 327 : on 2 >>>> SerLysSerIleGlyGluAlaIleTyrGlySerLeuTrpTyrAsn : 340 ||| !||||||.!!.!.||| !|||.!!|||! !|||||| ! ++SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeu 1394974 : .........agAGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTT : 1395366 341 : LeuSerProSerAspThrArgIleLeuLysPheIleMetLeuArgCysGlnLysAr : 359 |||..!|||..!|||! !!.!|||:!!! .!!:!!|||:!!|||! !|||!:!|| LeuAspProGlnAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgAr 1395367 : CTGGATCCTCAAGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACG : 1395423 360 : gLeuThrIleThrAlaGlyGlyValIleAspLeuThrLeuGluGlyPheThrSer : 378 ||||||||||||||||||| ! !!!!:||||||:!!||||||||||||.!!!:! gLeuThrIleThrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsn+ 1395424 : ATTAACAATCACCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATg : 1395480 379 : >>>> Target Intron 3 >>>> IleMetLysAlaSerValSerTyrValS : 387 387 bp |||:!:|||||||||!.!||||||:!!| + ++IleLeuLysAlaSerAlaSerTyrIleS 1395481 : t.........................agatcTTAAAGGCTTCTGCATCGTACATAT : 1395894 388 : erValLeuAsnAlaMetTyr : 393 |||||||| !!||||||||| erValLeuTyrAlaMetTyr 1395895 : CTGTACTGTATGCGATGTAC : 1395914 vulgar: CbirOr124 210 393 . KQ414716.1 1394161 1395914 + 422 M 77 231 5 0 2 I 0 460 3 0 2 M 38 114 5 0 2 I 0 349 3 0 2 M 52 156 5 0 2 I 0 383 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394162 1395914 422 + . gene_id 1 ; sequence CbirOr124 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394162 1394392 . + . KQ414716.1 exonerate:protein2genome:local exon 1394162 1394392 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394393 1394394 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394393 1394856 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394855 1394856 . + . intron_id 0 ; splice_site "aG" KQ414716.1 exonerate:protein2genome:local cds 1394857 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394857 1394970 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394971 1394972 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394971 1395323 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1395322 1395323 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1395324 1395479 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395479 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1395480 1395481 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1395480 1395866 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1395865 1395866 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1395867 1395914 . + . KQ414716.1 exonerate:protein2genome:local exon 1395867 1395914 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394162 1395914 422 + . alignment_id 1 ; Query CbirOr124 ; Align 1394162 211 231 ; Align 1394857 288 114 ; Align 1395324 326 156 ; Align 1395867 378 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr124 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 217 Query range: 241 -> 325 Target range: 1408291 -> 1408635 242 : IleLysThrPheIleTyrLysHisGlnArgIleIleIleLeuSerGluAsnIleGl : 260 :!:!:! !|||||| !!:!||||||!:!|||||||||!!!:!!|||!..||||| LeuArgPhePheIleSerArgHisGlnGlnIleIleIlePheAlaGluArgIleGl 1408292 : CTGAGATTCTTCATCAGCAGACATCAACAGATCATCATATTTGCAGAGAGAATAGA : 1408346 261 : uAsnLeuPheThrHisIleAlaLeuValGlnIleLeuTrpAsnThrValValMetC : 279 |!!.|||||||||:!!:!!|||||| !|||:!!|||! !||||||:!!:!!! | uLysLeuPheThrTyrLeuAlaLeuSerGlnLeuLeuSerAsnThrLeuIleThrC 1408347 : AAAACTGTTTACGTATCTAGCACTTAGTCAACTTCTCTCGAATACCCTAATTACTT : 1408403 280 : ysCysThrGlyPheValIleIleIle >>>> Target Intron 1 >>>> M : 288 |||||..!|||!:!:!!||| !.!! 92 bp ysCysValGlyTyrIleIleAlaPhe++ ++A 1408404 : GCTGCGTGGGTTATATTATCGCATTTgt.........................agG : 1408522 289 : etIleAspAsnGlyGluGlyValIleGlyLeuIleLysProValSerTyrTyrPhe : 306 :!!.!.|||..!.!.||| !!! ! !||||||||| !||| !||||||.!. laLeuGlnAsnAsnAsnGlyPheLysMetLeuIleLysPheValValTyrTyrMet 1408523 : CACTACAAAATAATAATGGATTTAAAATGTTGATCAAATTTGTTGTATATTACATG : 1408576 307 : AlaIleThrLeuGluAlaPheValPheCysPheAlaGlyGluPheLeuSerAlaLy : 325 |||:!: !! !|||||||||:!!!:!|||||||||||||||!:!|||!:! !|| AlaValCysSerGluAlaPheIleTyrCysPheAlaGlyGluTyrLeuAsnIleLy 1408577 : GCTGTGTGCTCAGAAGCGTTCATATACTGCTTTGCTGGAGAGTACCTTAATATCAA : 1408633 326 : s : 325 | s 1408634 : G : 1408635 vulgar: CbirOr124 241 325 . KQ414716.1 1408291 1408635 + 217 M 46 138 5 0 2 I 0 88 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408292 1408635 217 + . gene_id 2 ; sequence CbirOr124 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408292 1408429 . + . KQ414716.1 exonerate:protein2genome:local exon 1408292 1408429 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408430 1408431 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408430 1408521 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1408520 1408521 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1408522 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408522 1408635 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408292 1408635 217 + . alignment_id 2 ; Query CbirOr124 ; Align 1408292 242 138 ; Align 1408522 288 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr124 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 213 Query range: 0 -> 211 Target range: 1390523 -> 1392022 1 : MetLysArgAlaAsnThrIleSerArgSerValGluIleCysLeuArgPheIleGl : 19 |||..!!.! !!!.!:!||||||||| !!||||||||| !!||||||!!.! !|| MetSerHisAsnLysSerIleSerArgProValGluIleGlyLeuArgLeuThrGl 1390524 : ATGTCGCATAACAAAAGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGG : 1390578 20 : yLeuTrpProAsnSerAlaTyrAlaThrLeuTyrTrpIleThrTyrMetAlaThrL : 38 |:!!||||||..!|||:!!|||! !! !:!! ! ! :!!|||!::!!: ! !: yIleTrpProGlySerSerTyrGluIleIleValArgValThrTrpIleIleLeuM 1390579 : AATTTGGCCAGGTTCATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTA : 1390635 39 : euValIleMetGlnTyrCysGlnTyrAlaTyrIleValAlaArgPheGluLeuAsn : 56 !!..!:!!:!:||| ! !|||||| !||||||:!! !!.!.!!!!: !!:! etThrValValGlnIlePheGlnTyrArgTyrIleIleLysHisLeuAspGlySer 1390636 : TGACAGTTGTACAAATATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGT : 1390689 57 : AsnIleTrpLeuLeuMetAspCysLeuSerLeuThrLeuAlaTyrThrLeuValLe : 75 |||:!: ! !|||!!:||| !!:!!.!! !|||||| !!|||!:!|||:!!! AsnLeuAlaAsnLeuIleAspSerValGlyThrThrLeuProTyrSerLeuLeuTy 1390690 : AATCTGGCGAACTTAATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTA : 1390746 76 : uPheLysLeuIleIleLeuTrpTrpAsnArgArg{Se} >>>> Target Intr : 87 ! |||||||||||| :::|||..!!:!|||{.!} 884 bp rValLysLeuIleIle---PheTrpThrLysArg{Gl}++ 1390747 : Tgtcaaattaattatt---ttctggaCTAAACGT{GG}gt................ : 1390783 88 : on 1 >>>> {r}AspIleProCysPheLeuGlnAsnIleSerLeuArgArgGlu : 101 {!} ... ...||| !...!!:||| !.! ! ! ++{y}IlePheGluAsnMetLeuValGlyMetSer---AsnAspTrp 1390784 : .........ag{a}atattcgaaaatatgtTAGTGGGAATGTCT---AACGATTGG : 1391702 102 : LysGluCysThrMetAsnAspSerTyrAlaSerThrMetMetSerMetAlaAspVa : 120 !...!.! !:!! !.. ! ! ! !! !!:!.!!|||!!:|||! |||!!::! SerAsnSerSerSerThrLysPheAspIleAsnAlaMetIleSerLysAlaGluLe 1391703 : AGTAATTCTTCATCAACGAAATTTGACATAAACGCCATGATAAGTAAAGCTGAACT : 1391759 121 : lAlaArgArgLeuSerAsnIleValPheThrPheAsnThrPheValAlaPheSerL : 139 !||| !|||! !|||!!.:!!:!!.!.!:! !!.!!.!!!.!!.!|||:!!! uAlaTyrArgTyrSerLysValIleMetSerThrTyrAlaIleAlaValPheAlaT 1391760 : TGCGTATCGTTATTCGAAGGTAATTATGAGCACATATGCTATTGCCGTTTTCGCTT : 1391816 140 : euSerIleGlyGluHisTyrPheGlnSerMetSerAsnAlaAsnGlnIleAspAsn : 157 !!!! ... !:!|||:!!! !||| !!:!!! !||| |||..! yrThr------SerValPhePheGluPheMetArgHisAspAsn------AspGly 1391817 : ATACC------AGCGTGTTTTTCGAGTTTATGCGTCACGACAAC------GACGGC : 1391858 158 : SerSerGlnValSerProArgGluLeuProIleLysMetGluLeuProPheAspVa : 176 ..!! !.!.:!!!.! !!||||||||| !!!:||||||!!:|||||||||! GluTyrAspLeuLysSerArgGluLeuLeuMetLysMetAspLeuProPheAlaTy 1391859 : GAATATGATTTAAAGTCTCGAGAACTTTTGATGAAAATGGACCTCCCGTTTGCGTA : 1391915 177 : lSerLysSerProIlePheGluCysPheLeuIleGlyGlnPhePheTyrAspThrV : 195 !! !|||!!!|||! !:!:!!!! ! !!!:!!! !||||||.!! ! !: rTyrLysThrProThrTyrGlnTrpValPheValValGlnPheLeuGlnLeuLeuI 1391916 : TTACAAAACACCGACGTATCAATGGGTATTTGTTGTACAATTTCTTCAGCTGTTGA : 1391972 196 : alValAlaCysThrValGlyMetValAsnValLeuLeuValThrLeuVal : 211 !! !|||! !.!!:!!||||||:!!:!!!.!|||:!!:!!||||||||| leAsnAlaSerAlaIleGlyMetLeuAspAlaLeuIleIleThrLeuVal 1391973 : TAAATGCATCTGCTATTGGTATGTTAGATGCTTTGATAATTACGTTGGTA : 1392022 vulgar: CbirOr124 0 211 . KQ414716.1 1390523 1392022 + 213 M 80 240 G 1 0 M 5 15 S 0 2 5 0 2 I 0 880 3 0 2 S 1 1 M 10 30 G 1 0 M 42 126 G 2 0 M 11 33 G 2 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390524 1392022 213 + . gene_id 3 ; sequence CbirOr124 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1390524 1390780 . + . KQ414716.1 exonerate:protein2genome:local exon 1390524 1390780 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local splice5 1390781 1390782 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1390781 1391664 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1391663 1391664 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1391665 1392022 . + . KQ414716.1 exonerate:protein2genome:local exon 1391665 1392022 . + . insertions 0 ; deletions 5 KQ414716.1 exonerate:protein2genome:local similarity 1390524 1392022 213 + . alignment_id 3 ; Query CbirOr124 ; Align 1390524 1 240 ; Align 1390764 82 15 ; Align 1391666 88 30 ; Align 1391696 99 126 ; Align 1391822 143 33 ; Align 1391855 156 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr124 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 210 -> 286 Target range: 1387110 -> 1387338 211 : ValLeuHisValSerGlyGlnIleAspIleMetGlnGlnAsnLeuIleGluIleSe : 229 :!!|||||||||.!!||||||||||||:!!:!! ||||||:!!! !!!:||||| IleLeuHisValGlyGlyGlnIleAspLeuLeuCysGlnAsnMetArgAspIleSe 1387111 : ATATTACATGTTGGTGGTCAGATCGATTTATTGTGTCAAAACATGAGAGACATTTC : 1387165 230 : rAsnLysLysTyrAspArgSerIlePheLeuAlaValIleLysThrPheIleTyrL : 248 |..!!!. ! ! ! !:! ! ! !..!|||||| ! !!:!! !! rArgAsnHisGluLysLysValProGlnLysLeuThrIleLysAspValValValA 1387166 : TCGTAATCATGAGAAGAAAGTACCGCAAAAACTGACAATAAAGGATGTCGTTGTTA : 1387222 249 : ysHisGlnArgIleIleIleLeuSerGluAsnIleGluAsnLeuPheThrHisIle : 266 :!||||||||||||||| !||||||:!!|||||||||!..:!!||||||:!!||| rgHisGlnArgIleIleArgLeuSerLysAsnIleGluThrValPheThrTyrIle 1387223 : GGCATCAACGAATTATACGACTGTCTAAAAATATCGAGACAGTTTTTACTTATATA : 1387276 267 : AlaLeuValGlnIleLeuTrpAsnThrValValMetCysCysThrGlyPheValIl : 285 :!!||| |||...||| ||| :!!|||!!:|||! !! !.!!||||||:! SerLeuCysGlnPheLeuSerAsnMetLeuValIleCysPheIleSerPheValLe 1387277 : TCATTATgccaatttttatcgaatatgcTGGTTATCTGTTTCATAAGCTTCGTTTT : 1387333 286 : eIle : 286 ::!! uVal 1387334 : GGTA : 1387338 vulgar: CbirOr124 210 286 . KQ414716.1 1387110 1387338 + 166 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387111 1387338 166 + . gene_id 4 ; sequence CbirOr124 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387111 1387338 . + . KQ414716.1 exonerate:protein2genome:local exon 1387111 1387338 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387111 1387338 166 + . alignment_id 4 ; Query CbirOr124 ; Align 1387111 211 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr124 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 0 -> 89 Target range: 1385619 -> 1385883 1 : MetLysArgAlaAsnThrIleSerArgSerValGluIleCysLeuArgPheIleGl : 19 |||! !.!!!.!! !|||!:!||| !!:!!||| ! !!||||||.!..!!|| MetThrSerThrThrIleIleAsnArgProLeuGluTyrSerLeuArgLeuPheGl 1385620 : ATGACTTCGACGACTATAATTAATCGTCCATTGGAATATAGCCTCCGTCTATTTGG : 1385674 20 : yLeuTrpProAsnSerAlaTyrAlaThrLeuTyrTrpIleThrTyrMetAlaThrL : 38 | !||||||:!!|||:!!|||:!! !||| ! ! |||! !!:: !.!!! !: yAlaTrpProAspSerSerTyrSerPheLeuLysSerIleIleTrpSerThrIleM 1385675 : CGCCTGGCCAGATTCTTCCTATTCATTTCTGAAAAGTATTATTTGGTCGACGATAA : 1385731 39 : euValIleMetGlnTyrCysGlnTyrAlaTyrIleValAlaArgPheGluLeuAsn : 56 !!!.!! ... |||||| !||| !:!!.!!!.!.!!..!! !... etAlaThrPheLeuMetPheGlnTyrTrpTyrCysIleThrHisIleArgSerGly 1385732 : TGGCAAcgtttttaatgtttcaataTTGGTATTGTATTACTCATATTAGATCAggt : 1385785 57 : AsnIleTrpLeuLeuMetAspCysLeuSerLeuThrLeuAlaTyrThrLeuValLe : 75 ||| |||||| ||| ! ||||||:!!||||||:!! !!:!!||||||!! LeuIleAspLeuLeu---AspGlyLeuSerIleThrLeuSerAsnSerLeuValPh 1385786 : ttaattgatttattg---GACGGATTGAGTATTACTTTATCAAATTCACTCGTCTT : 1385839 76 : uPheLysLeuIleIleLeuTrpTrpAsnArgArgSerAspIle : 89 !.!!||||||||||||:!!||| :!!!!!|||! |||||| eLeuLysLeuIleIleIleTrpLeuHisSerArg***AspIle 1385840 : TCTCAAATTGATTATTATTTGGCTTCATAGTCGGTaggatata : 1385883 vulgar: CbirOr124 0 89 . KQ414716.1 1385619 1385883 + 129 M 61 183 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1385620 1385883 129 + . gene_id 5 ; sequence CbirOr124 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1385620 1385883 . + . KQ414716.1 exonerate:protein2genome:local exon 1385620 1385883 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local similarity 1385620 1385883 129 + . alignment_id 5 ; Query CbirOr124 ; Align 1385620 1 183 ; Align 1385803 63 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr124 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 160 -> 211 Target range: 1405947 -> 1406100 161 : ValSerProArgGluLeuProIleLysMetGluLeuProPheAspValSerLysSe : 179 ..!:!!|||||||||||| !|||||||||!!:|||||||||:!!..!!:!!!.|| ThrAlaProArgGluLeuLeuIleLysMetAspLeuProPheAsnThrAsnAsnSe 1405948 : ACAGCACCTCGAGAACTTTTGATAAAAATGGACTTGCCATTTAATACGAACAATTC : 1406002 180 : rProIlePheGluCysPheLeuIleGlyGlnPhePheTyrAspThrValValAlaC : 198 |||||||!:!||| ! :!!:!! !|||!:!.!.! ! ! ..! !..!|||! rProIleTyrGluLeuValIleValLeuGlnTyrLeuCysLysValSerThrAlaP 1406003 : GCCTATTTACGAGCTGGTAATAGTTTTACAATACCTATGCAAAGTATCGACAGCTT : 1406059 199 : ysThrValGlyMetValAsnValLeuLeuValThrLeuVal : 211 !||| !!|||:!: !!!:! !||||||:!!! !:!!||| heThrPheGlyValPheSerSerLeuLeuLeuMetMetVal 1406060 : TTACGTTTGGTGTATTCAGCAGTCTGCTTTTGATGATGGTA : 1406100 vulgar: CbirOr124 160 211 . KQ414716.1 1405947 1406100 + 104 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1405948 1406100 104 + . gene_id 6 ; sequence CbirOr124 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1405948 1406100 . + . KQ414716.1 exonerate:protein2genome:local exon 1405948 1406100 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1405948 1406100 104 + . alignment_id 6 ; Query CbirOr124 ; Align 1405948 161 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr123 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 478 Query range: 84 -> 386 Target range: 1386354 -> 1387955 85 : ArgArgIlePheHisHisIleLeuAlaAlaMetGluHisAspTrpArgGluCysAl : 103 !.!|||! !|||:!! !||||||.!!.!!:!: .!.|||!! !.!.!.! !|| AsnArgThrPheTyrGlyIleLeuThrThrValPheGluAspCysAsnAsnTyrAl 1386355 : AACAGAACATTTTATGGCATTCTGACAACCGTATTCGAGGACTGCAATAATTATGC : 1386409 104 : aValAsnAspSerTyrValSerThrMetLeuAsnValAlaGluLeuSerHisArgC : 122 | !!.. ... ||| !:!! !||| !|||||| !||| aSerThrValGluAsnLysArgIleMetThrAspLysAlaMetLeuSerSerArgI 1386410 : TTCTAccgttgaaaataaacgaataatgACAGATAAAGCTATGTTGTCTTCTCGta : 1386466 123 : ysSerAsnValMetIleSerIleAsnAlaLeuAlaAlaPhePheLeuSerIleGly : 140 |||||| :::|||... ! !:!!:!!.!! |||||| ! !..! leSerAsnPheLeuIleGlyTyrPheSerIleThr------PheLeuValTyrSer 1386467 : tctcaaattttttaattggctATTTTTCGATCACG------TTCCTTGTATATTCA : 1386514 141 : GluHisLeuLeuGlnSerMetAsnValAspAspSerArgAlaAsnAsnTyrSerAr : 159 ! !! ! !||| !! !.!.:!!! !|||.!.!:! !! !! !::! ...|| GlyLeuAlaLeuValLeuPheAspGluAspGlnAsnGlyProValSerLysGlnAr 1386515 : GGACTTGCTCTAGTATTATTTGATGAAGATCAGAATGGACCGGTTTCCAaacaaag : 1386571 160 : gGluLeuProIleLysMetGluPheProPheAspValSerLysSerProValPheG : 178 |:::... |||:::|||||||||||||||!!:!.!!!! |||||| :::| gLysPheLeuIleArgMetGluPheProPheGluAlaThrValSerProArgTyrG 1386572 : gaaatttttaattagaatggAATTTCCTTTCGAAGCTACAGTCTCTCCACgttatg : 1386628 179 : luCysPheLeuMetGlyGlnPheLeuTyrGluLeuValLeuAlaCysLeuValGly : 196 || ...|||::: ||||||::::::||| ! !!:!!!.!! ! !!.!!.! luIleIleLeuValValGlnPheIlePheGluAlaPheIleValTyrGlyAlaAla 1386629 : aaattattctagttgtacaatttatattcgaagcATTTATAGTTTATGGAGCAGCT : 1386682 197 : MetValAsnAlaIleLeuValSerLeu >>>> Target Intron 1 >>>> : 206 ! !! |||:!!:!!!.! !||| 399 bp ThrSerIleAlaLeuIleAlaValLeu++ ++ 1386683 : ACATCGATAGCCCTAATTGCAGTACTAgt.........................ag : 1387109 207 : IleLeuHisValSerGlyGlnIleAspIleMetArgGlnAspLeuIleLysIleSe : 224 ||||||||||||.!!||||||||||||:!!:!! !!|||:!!:!!! ! ! ||||| IleLeuHisValGlyGlyGlnIleAspLeuLeuCysGlnAsnMetArgAspIleSe 1387110 : ATATTACATGTTGGTGGTCAGATCGATTTATTGTGTCAAAACATGAGAGACATTTC : 1387165 225 : rAsnAsnTyrAsnProSerThrSerLeuAsnVal<->IleLysArgPheIleAspA : 242 |..!|||:!!.!. !!.!..! !!! !!!.:!! |||||| ! !!:!!! !| rArgAsnHisGluLysLysValProGlnLysLeuThrIleLysAspValValValA 1387166 : TCGTAATCATGAGAAGAAAGTACCGCAAAAACTGACAATAAAGGATGTCGTTGTTA : 1387222 243 : rgHisGlnLysThrIleIleLeuSerGluHisIleGluAsnLeuPheThrTyrIle : 260 ||||||||::!! !||| !||||||:!!:!!||||||!..:!!|||||||||||| rgHisGlnArgIleIleArgLeuSerLysAsnIleGluThrValPheThrTyrIle 1387223 : GGCATCAACGAATTATACGACTGTCTAAAAATATCGAGACAGTTTTTACTTATATA : 1387276 261 : AlaLeuMetGlnLeuLeuTrpAsnThrLeuValIleCysCysThrGlyPheValIl : 279 :!!||| |||...||| ||| ||||||||||||! !! !.!!||||||:! SerLeuCysGlnPheLeuSerAsnMetLeuValIleCysPheIleSerPheValLe 1387277 : TCATTATgccaatttttatcgaatatgcTGGTTATCTGTTTCATAAGCTTCGTTTT : 1387333 280 : eIleIle >>>> Target Intron 2 >>>> ThrIleGlyThrAsnGluGl : 288 ::!!! ! 85 bp :!!:!:..!|||.!.:!! uValThr++ ++SerLeuAsnThrGluGlnTh 1387334 : GGTAACCgt.........................agTCCTTGAACACGGAACAGAC : 1387445 289 : yAlaThrAlaSerIleLysSerValSerPheTyrIleAlaIleThrLeuGluValP : 307 !.!! ! !! !:!:|||!!! !! !!!:!|||:!!|||:!!!.!! !|||!.!| rThrGlyLeuIleLeuLysCysPheProTyrTyrValAlaValAsnCysGluAlaP 1387446 : AACTGGATTAATACTGAAATGTTTTCCCTATTACGTTGCTGTTAATTGTGAAGCAT : 1387502 308 : heIleLeuCysPheAlaGlyGluPheLeuSerAlaLys >>>> Target Intr : 320 |||||||||||!:!.!!||||||!:!|||!!!:!!||| 79 bp heIleLeuCysTyrThrGlyGluTyrLeuThrSerLys++ 1387503 : TCATTTTATGTTATACCGGAGAATATCTAACCTCTAAGgt................ : 1387543 321 : on 3 >>>> SerLysSerIleSerAspAlaValTyrGluSerLeuTrpTyrAsp : 334 |||:!! !!|||!!!.!.:!:||||||... |||||||||||| ++SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAsp 1387544 : .........agagtgAACGTATTACACAATCtgtgtacaattttctttggTACGAT : 1387662 335 : MetProProThrAspSerArgIleLeuLeuPheIleIleIleArgSerGlnLysAr : 353 :!: !||| !!!::!!||||||:::|||...||||||:::||||||||||||.. LeuLysProArgGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGl 1387663 : CTAAAACCTCGAGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGA : 1387719 354 : gLeuThrIleThrAlaGlyLysValValAspLeuThrLeuGluGlyPheThrSer : 372 !|||! !:!!|||||||||||| !!|||:!!|||:!!|||! !.!|||.!!!:: uLeuIleLeuThrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn+ 1387720 : GTTAATACTCACTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtg : 1387776 373 : >>>> Target Intron 4 >>>> IleMetLysAlaSerAlaSerTyrValS : 381 135 bp ::::!:|||||||||||||||||||||| + ++MetLeuLysAlaSerAlaSerTyrValS 1387777 : t.........................agatgCTAAAAGCTTCAGCCTCGTACGTAT : 1387938 382 : erValLeuAsnAlaMet : 386 ||||||||:!!|||||| erValLeuHisAlaMet 1387939 : CTGTTTTGCATGCAATG : 1387955 vulgar: CbirOr123 84 386 . KQ414716.1 1386354 1387955 + 478 M 49 147 G 2 0 M 70 210 5 0 2 I 0 395 3 0 2 M 30 90 G 0 3 M 46 138 5 0 2 I 0 81 3 0 2 M 38 114 5 0 2 I 0 75 3 0 2 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1386355 1387955 478 + . gene_id 1 ; sequence CbirOr123 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1386355 1386711 . + . KQ414716.1 exonerate:protein2genome:local exon 1386355 1386711 . + . insertions 0 ; deletions 2 KQ414716.1 exonerate:protein2genome:local splice5 1386712 1386713 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1386712 1387110 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387109 1387110 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387111 1387341 . + . KQ414716.1 exonerate:protein2genome:local exon 1387111 1387341 . + . insertions 3 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387342 1387343 . + . intron_id 2 ; splice_site "Gt" KQ414716.1 exonerate:protein2genome:local intron 1387342 1387426 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1387425 1387426 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387427 1387540 . + . KQ414716.1 exonerate:protein2genome:local exon 1387427 1387540 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387541 1387542 . + . intron_id 3 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387541 1387619 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1387618 1387619 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 4 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 4 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 3 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1386355 1387955 478 + . alignment_id 1 ; Query CbirOr123 ; Align 1386355 85 147 ; Align 1386502 136 210 ; Align 1387111 206 90 ; Align 1387204 236 138 ; Align 1387427 282 114 ; Align 1387620 320 156 ; Align 1387911 372 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr123 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 241 Query range: 281 -> 386 Target range: 1408521 -> 1409528 282 : ThrIleGlyThrAsnGluGlyAlaThrAlaSerIleLysSerValSerPheTyrIl : 300 .!!:!! !!.!|||.!.||| !! ! !! !||||||! !||| !!:!|||!! AlaLeuGlnAsnAsnAsnGlyPheLysMetLeuIleLysPheValValTyrTyrMe 1408522 : GCACTACAAAATAATAATGGATTTAAAATGTTGATCAAATTTGTTGTATATTACAT : 1408576 301 : eAlaIleThrLeuGluValPheIleLeuCysPheAlaGlyGluPheLeuSerAlaL : 319 :|||:!: !! !|||!.!||||||! !|||||||||||||||!:!|||!:! !| tAlaValCysSerGluAlaPheIleTyrCysPheAlaGlyGluTyrLeuAsnIleL 1408577 : GGCTGTGTGCTCAGAAGCGTTCATATACTGCTTTGCTGGAGAGTACCTTAATATCA : 1408633 320 : ys >>>> Target Intron 1 >>>> SerLysSerIleSerAspAlaValT : 328 || 414 bp |||||| |||...|||.!!!.!| ys++ ++SerLysLeuIleGlyAspThrAlaT 1408634 : AGgt.........................agagtaaactgattggagACACGGCGT : 1409074 329 : yrGluSerLeuTrpTyrAspMetProProThrAspSerArgIleLeuLeuPheIle : 346 |||||! !|||||||||:!!|||! ! !!! !!!:||||||:!!:!!|||.!!:!! yrGluPheLeuTrpTyrAsnMetHisSerLysGluSerArgLeuMetLeuLeuVal 1409075 : ATGAATTTCTTTGGTATAATATGCATTCGAAGGAAAGCCGACTTATGTTGCTTGTA : 1409128 347 : IleIleArgSerGlnLysArgLeuThrIleThrAlaGlyLysValValAspLeuTh : 365 |||:!!|||||||||||| !!!!!|||...||| |||||| ......|||:! IleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysPheAlaSerLeuSe 1409129 : ATACTACGATCACAGAAAGGATTTACtttcacttttggaaaatttgcaagtCTTTC : 1409185 366 : rLeuGluGlyPheThrSer >>>> Target Intron 2 >>>> IleMetLy : 374 !:!!|||.!!|||.!!.!! 278 bp |||||||| rMetGluSerPheAlaGly++ ++IleMetLy 1409186 : CATGGAAAGTTTTGCAGGCgt.........................agattATGAA : 1409490 375 : sAlaSerAlaSerTyrValSerValLeuAsnAlaMet : 386 ||||||||||||||||:!!||||||||| !|||||| sAlaSerAlaSerTyrIleSerValLeuLeuAlaMet 1409491 : AGCTTCTGCATCGTATATATCCGTATTGCTCGCAATG : 1409528 vulgar: CbirOr123 281 386 . KQ414716.1 1408521 1409528 + 241 M 38 114 5 0 2 I 0 410 3 0 2 M 52 156 5 0 2 I 0 274 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408522 1409528 241 + . gene_id 2 ; sequence CbirOr123 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408522 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408522 1408635 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408636 1408637 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408636 1409049 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1409048 1409049 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409050 1409205 . + . KQ414716.1 exonerate:protein2genome:local exon 1409050 1409205 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1409206 1409207 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1409206 1409483 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1409482 1409483 . + . intron_id 1 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409484 1409528 . + . KQ414716.1 exonerate:protein2genome:local exon 1409484 1409528 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408522 1409528 241 + . alignment_id 2 ; Query CbirOr123 ; Align 1408522 282 114 ; Align 1409050 320 156 ; Align 1409484 372 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr123 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 210 Query range: 205 -> 319 Target range: 1394161 -> 1394970 206 : IleLeuHisValSerGlyGlnIleAspIleMetArgGlnAspLeuIleLysIleSe : 224 |||!!!|||:!!.!!|||||||||!!:!!::!!!:!:!!! !||| ...||||| IlePheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAsnIleSe 1394162 : ATATTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaatatttc : 1394216 225 : r<->AsnAsnTyrAsnProSerThrSerLeuAsnValIleLysArgPheIleAspA : 242 | ...:!! ! !!.! !!!! !||| !|||..!! !||| !!!.||| !!| rIleLysAspGluLysHisArgLeuSerArgAsnThrThrLysSerLeuIleHisA 1394217 : tattaaagATGAGAAACACAGATTATCGAGAAACACCACCAAATCATTAATTCACA : 1394273 243 : rgHisGlnLysThrIleIleLeuSerGluHisIleGluAsnLeuPheThrTyrIle : 260 |||||!!.::!! !|||||| !|||!!: !||||||!:!||||||:!!|||||| rgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIle 1394274 : GACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACATT : 1394327 261 : AlaLeuMetGlnLeuLeuTrpAsnThrLeuValIleCysCysThrGly{Ph} >> : 277 ||||||||||||! !|||!! |||||||||||||||||||||! !|||{||} AlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGly{Ph}-+ 1394328 : GCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGA{TT}ct.. : 1394382 278 : >> Target Intron 1 >>>> {e}ValIleIleIleThrIleGlyThrAsnG : 287 464 bp {|}::::::::: .!!.!!..!|||::: +-{e}LeuLeuLeu***AlaPheAsnThrAspG 1394383 : .......................at{t}ttattgttgtaGGCATTTAATACAGatg : 1394872 288 : luGlyAlaThrAlaSerIleLysSerValSerPheTyrIleAlaIleThrLeuGlu : 305 ... ... ||||||:::::! !||||||||||||||||||:!!||| lyAsnIleLysThrPheIleLysThrLeuLeuPheTyrIleAlaIleThrMetGlu 1394873 : gaaatataaaaacatttataaaaacattACTCTTTTACATCGCTATCACTATGGAA : 1394926 306 : ValPheIleLeuCysPheAlaGlyGluPheLeuSerAlaLys : 319 !.!||||||!!!! !||||||||||||!:!|||||| !||| AlaPheIlePheSerPheAlaGlyGluTyrLeuSerAsnLys 1394927 : GCATTCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAA : 1394970 vulgar: CbirOr123 205 319 . KQ414716.1 1394161 1394970 + 210 M 19 57 G 0 3 M 52 156 S 0 2 5 0 2 I 0 460 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394162 1394970 210 + . gene_id 3 ; sequence CbirOr123 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394162 1394379 . + . KQ414716.1 exonerate:protein2genome:local exon 1394162 1394379 . + . insertions 3 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394380 1394381 . + . intron_id 1 ; splice_site "CT" KQ414716.1 exonerate:protein2genome:local intron 1394380 1394843 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394842 1394843 . + . intron_id 0 ; splice_site "at" KQ414716.1 exonerate:protein2genome:local cds 1394844 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394844 1394970 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394162 1394970 210 + . alignment_id 3 ; Query CbirOr123 ; Align 1394162 206 57 ; Align 1394222 225 156 ; Align 1394845 278 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr123 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 186 Query range: 0 -> 85 Target range: 1390523 -> 1390778 1 : MetLysArgThrSerThrIleSerGlyLeuValGluPheGlyLeuArgPheIleGl : 19 |||..!!.!!.!!.!!:!|||||| !!! !||||||.!!|||||||||!!.! !|| MetSerHisAsnLysSerIleSerArgProValGluIleGlyLeuArgLeuThrGl 1390524 : ATGTCGCATAACAAAAGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGG : 1390578 20 : yMetTrpProGlySerThrTyrAlaAsnLeuTrpTrpLeuIleTyrMetThrThrI : 38 |!!:||||||||||||:!!|||! !! !:!! ! :!!! !!::!!:! ! !! yIleTrpProGlySerSerTyrGluIleIleValArgValThrTrpIleIleLeuM 1390579 : AATTTGGCCAGGTTCATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTA : 1390635 39 : leValIleValGlnTyrTyrGlnTyrMetTyrValCysThrHisPheAspLeuSer : 56 !:..!:!!|||||| !:!|||||| |||:!! ! !|||.!!||| !||| etThrValValGlnIlePheGlnTyrArgTyrIleIleLysHisLeuAspGlySer 1390636 : TGACAGTTGTACAAATATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGT : 1390689 57 : AspLeuSerLeuLeuMetAspCysLeuGlyLeuThrLeuAlaTyrSerLeuAlaPh : 75 :!!|||:!! !|||!!:||| !!:!!||| !|||||| !!||||||||| !!: AsnLeuAlaAsnLeuIleAspSerValGlyThrThrLeuProTyrSerLeuLeuTy 1390690 : AATCTGGCGAACTTAATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTA : 1390746 76 : eValLysLeuPheAlaLeuTrpTrpAsnArg : 85 !|||||||||... ...||| !!.||| rValLysLeuIleIlePheTrpThrLysArg 1390747 : TgtcaaattaattattttctggaCTAAACGT : 1390778 vulgar: CbirOr123 0 85 . KQ414716.1 1390523 1390778 + 186 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390524 1390778 186 + . gene_id 4 ; sequence CbirOr123 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1390524 1390778 . + . KQ414716.1 exonerate:protein2genome:local exon 1390524 1390778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390524 1390778 186 + . alignment_id 4 ; Query CbirOr123 ; Align 1390524 1 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr123 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 319 -> 387 Target range: 1402435 -> 1402808 320 : SerLysSerIleSerAspAlaValTyrGluSerLeuTrpTyrAspMetProProTh : 338 |||:!! !|||.!!:!!.!!!.!||||||! !||||||||||||:!:! ! !!|| SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerTh 1402436 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAAC : 1402490 339 : rAspSerArgIleLeuLeuPheIleIleIleArgSerGlnLysArgLeuThrIleT : 357 |!!:|||!:!:!!|||:!! !:!!|||:!:|||||||||||| !!!!!|||...| rGluSerGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheT 1402491 : TGAAAGCCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACGTtta : 1402547 358 : hrAlaGlyLysValValAspLeuThrLeuGluGlyPheThrSer >>>> Targe : 372 || |||||| ...|||:!!||||||.!!||||||:!! hrPheGlyLysPheSerSerLeuSerLeuGluSerPheThrAla++ 1402548 : cttttggaaaattttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.......... : 1402594 373 : t Intron 1 >>>> IleMetLysAlaSerAlaSerTyrValSerValLeuAsn : 384 169 bp |||||||||!.!||||||||||||:!!||||||||| ! ++IleMetLysValSerAlaSerTyrIleSerValLeuLeu 1402595 : ...............agATCATGAAAGTCTCAGCATCATATATATCAGTACTTCTT : 1402797 385 : AlaMetTyr : 387 |||:!!||| AlaValTyr 1402798 : GCAGTGTAT : 1402808 vulgar: CbirOr123 319 387 . KQ414716.1 1402435 1402808 + 171 M 52 156 5 0 2 I 0 165 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1402436 1402808 171 + . gene_id 5 ; sequence CbirOr123 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1402436 1402591 . + . KQ414716.1 exonerate:protein2genome:local exon 1402436 1402591 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1402592 1402593 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1402592 1402760 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1402759 1402760 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402761 1402808 . + . KQ414716.1 exonerate:protein2genome:local exon 1402761 1402808 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1402436 1402808 171 + . alignment_id 5 ; Query CbirOr123 ; Align 1402436 320 156 ; Align 1402761 372 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr123 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 319 -> 372 Target range: 1395323 -> 1395482 320 : SerLysSerIleSerAspAlaValTyrGluSerLeuTrpTyrAspMetProProTh : 338 ||| !|||||||||:!!|||!.!|||...|||! !|||||| !:!! !||| SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 339 : rAspSerArgIleLeuLeuPheIleIleIleArgSerGlnLysArgLeuThrIleT : 357 !|||!!!!.!|||:!!:!!.!!:!!!!:||||||||||||!:!||||||||||||| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 358 : hrAlaGlyLysValValAspLeuThrLeuGluGlyPheThrSerIle : 372 ||||||||||| !!:!!||||||:!!||||||||||||.!!!:!:!! hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnVal 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTA : 1395482 vulgar: CbirOr123 319 372 . KQ414716.1 1395323 1395482 + 158 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395482 158 + . gene_id 6 ; sequence CbirOr123 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395482 158 + . alignment_id 6 ; Query CbirOr123 ; Align 1395324 320 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr123 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 235 -> 281 Target range: 1401096 -> 1401234 236 : IleLysArgPheIleAspArgHisGlnLysThrIleIleLeuSerGluHisIleGl : 254 |||||| ||||||:!!|||||||||:!!! !|||:!!!!!:!!|||...||||| IleLysPhePheIleAsnArgHisGlnGluIleIleValPheAlaGluArgIleGl 1401097 : ataaaattcttcattaACAGACATCAGGAAATTATTGTTTTTGCAGAAAGAATTGA : 1401151 255 : uAsnLeuPheThrTyrIleAlaLeuMetGlnLeuLeuTrpAsnThrLeuValIleC : 273 |!!.||||||||||||!!:||||||! ||||||:!!! ||||||:!!:!!|||| uLysLeuPheThrTyrMetAlaLeuSerGlnLeuValSerAsnThrIleIleIleC 1401152 : GAAACTTTTTACATACATGGCTCTCAGTCAACTTGTGTCCAATACGATAATTATAT : 1401208 274 : ysCysThrGlyPheValIleIleIle : 281 |||||..!||||||:!!:!!:!!||| ysCysValGlyPheLeuValValIle 1401209 : GTTGCGTAGGATTTCTCGTTGTAATT : 1401234 vulgar: CbirOr123 235 281 . KQ414716.1 1401096 1401234 + 155 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401097 1401234 155 + . gene_id 7 ; sequence CbirOr123 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1401097 1401234 . + . KQ414716.1 exonerate:protein2genome:local exon 1401097 1401234 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401097 1401234 155 + . alignment_id 7 ; Query CbirOr123 ; Align 1401097 236 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr123 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 228 -> 279 Target range: 1408270 -> 1408423 229 : ProSerThrSerLeuAsnValIleLysArgPheIleAspArgHisGlnLysThrIl : 247 |||! !! !!:! !!.! !:!:!:! !||||||..!|||||||||:!!! !|| ProTyrLysAsnLysThrGlnLeuArgPhePheIleSerArgHisGlnGlnIleIl 1408271 : CCTTATAAGAATAAAACTCAACTGAGATTCTTCATCAGCAGACATCAACAGATCAT : 1408325 248 : eIleLeuSerGluHisIleGluAsnLeuPheThrTyrIleAlaLeuMetGlnLeuL : 266 ||||!!!:!!|||...||||||!!.||||||||||||:!!||||||! ||||||| eIlePheAlaGluArgIleGluLysLeuPheThrTyrLeuAlaLeuSerGlnLeuL 1408326 : CATATTTGCAGAGAGAATAGAAAAACTGTTTACGTATCTAGCACTTAGTCAACTTC : 1408382 267 : euTrpAsnThrLeuValIleCysCysThrGlyPheValIle : 279 ||! !|||||||||:!!! !||||||..!|||!:!:!!||| euSerAsnThrLeuIleThrCysCysValGlyTyrIleIle 1408383 : TCTCGAATACCCTAATTACTTGCTGCGTGGGTTATATTATC : 1408423 vulgar: CbirOr123 228 279 . KQ414716.1 1408270 1408423 + 145 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408271 1408423 145 + . gene_id 8 ; sequence CbirOr123 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1408271 1408423 . + . KQ414716.1 exonerate:protein2genome:local exon 1408271 1408423 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408271 1408423 145 + . alignment_id 8 ; Query CbirOr123 ; Align 1408271 229 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr126 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 382 Query range: 196 -> 377 Target range: 1387110 -> 1387955 197 : ValLeuHisValSerGlyGlnIleAspValMetCysGlnGlyLeuArgGluIleSe : 215 :!!|||||||||.!!||||||||||||:!!:!!||||||..!:!!|||!!:||||| IleLeuHisValGlyGlyGlnIleAspLeuLeuCysGlnAsnMetArgAspIleSe 1387111 : ATATTACATGTTGGTGGTCAGATCGATTTATTGTGTCAAAACATGAGAGACATTTC : 1387165 216 : rSerThrArgLysSer<-><-><->AspProLeuAlaThrArgSerLeuValGluA : 231 | !!!.!!.!:!!!.! .!. !|||.!!! !!:!..!:!!|||! | rArgAsnHisGluLysLysValProGlnLysLeuThrIleLysAspValValValA 1387166 : TCGTAATCATGAGAAGAAAGTACCGCAAAAACTGACAATAAAGGATGTCGTTGTTA : 1387222 232 : rgHisGlnArgIleIleSerLeuSerAsnSerIleGluAsnPhePheSerPheVal : 249 ||||||||||||||||| !!||||||!!.!:!||||||!.. !!|||!!!!:!:!! rgHisGlnArgIleIleArgLeuSerLysAsnIleGluThrValPheThrTyrIle 1387223 : GGCATCAACGAATTATACGACTGTCTAAAAATATCGAGACAGTTTTTACTTATATA : 1387276 250 : AlaLeuIleGlnPheValTrpAsnThrIleValIleCysSerIleGlyLeuMetIl : 268 :!!||| ||||||::: ||| :!:|||||||||! !|||.!!!!!:!::! SerLeuCysGlnPheLeuSerAsnMetLeuValIleCysPheIleSerPheValLe 1387277 : TCATTATgccaatttttatcgaatatgcTGGTTATCTGTTTCATAAGCTTCGTTTT : 1387333 269 : eValIleSer{L} >>>> Target Intron 1 >>>> {eu}GlyThrAspM : 276 :|||! ! { } 79 bp { !}..! !:!!! uValThrVal{L}++ +-{ys}SerLeuAsnT 1387334 : GGTAACCGta{a}gt.........................aa{AG}TCCTTGAACA : 1387436 277 : etGluGlyLysSerGlyIleLeuIleGlnSerIleIleProTyrIleAlaValThr : 294 !||| !! !!!!|||:!!:!!:!::!!!!!.!! ! !|||:!!||||||!.! hrGluGlnThrThrGlyLeuIleLeuLysCysPheProTyrTyrValAlaValAsn 1387437 : CGGAACAGACAACTGGATTAATACTGAAATGTTTTCCCTATTACGTTGCTGTTAAT : 1387490 295 : LeuGluAlaPheValPheCysPheAlaGlyGluTyrLeuSerSerLys >>>> T : 311 ! !|||||||||:!!!!.|||!:!.!!||||||||||||!!!|||||| CysGluAlaPheIleLeuCysTyrThrGlyGluTyrLeuThrSerLys++ 1387491 : TGTGAAGCATTCATTTTATGTTATACCGGAGAATATCTAACCTCTAAGgt...... : 1387543 312 : arget Intron 2 >>>> SerLysSerIleGlyAspAlaAlaTyrGluThrLe : 322 79 bp |||:!! !!||| !.!.:!:...|||... || ++SerGluArgIleThrGlnSerValTyrAsnPheLe 1387544 : ...................agagtgAACGTATTACACAATCtgtgtacaattttct : 1387653 323 : uTrpTyrAspLeuSerThrLysGluCysArgIleLeuLeuLeuIleIleIleArgS : 341 |||||||||||||!.! !!::!|||..!||||||:::||||||||||||:::|||| uTrpTyrAspLeuLysProArgGluAlaArgIleValLeuLeuIleIleLeuArgS 1387654 : ttggTACGATCTAAAACCTCGAGAAGCTCgtattgtattattaataatattacgaT : 1387710 342 : erGlnLysArgLeuThrIleThrAlaGlyLysValMetAspLeuThrLeuGluGly : 359 ||||||||..!|||! !:!!|||||||||||| !!:!!:!!|||:!!|||! !.! erGlnLysGluLeuIleLeuThrAlaGlyLysPheValAsnLeuSerLeuAlaAla 1387711 : CTCAGAAAGAGTTAATACTCACTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCA : 1387764 360 : PheThrSer >>>> Target Intron 3 >>>> ValMetLysAlaSerAla : 368 |||.!!!:: 135 bp ::::!:|||||||||||| PheAlaAsn++ ++MetLeuLysAlaSerAla 1387765 : TTTGCTAAtgt.........................agatgCTAAAAGCTTCAGCC : 1387926 369 : SerTyrIleSerValLeuHisValIle : 377 ||||||:!!||||||||||||!.!!!: SerTyrValSerValLeuHisAlaMet 1387927 : TCGTACGTATCTGTTTTGCATGCAATG : 1387955 vulgar: CbirOr126 196 377 . KQ414716.1 1387110 1387955 + 382 M 24 72 G 0 9 M 51 153 S 0 1 5 0 2 I 0 75 3 0 2 S 1 2 M 38 114 5 0 2 I 0 75 3 0 2 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387111 1387955 382 + . gene_id 1 ; sequence CbirOr126 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387111 1387345 . + . KQ414716.1 exonerate:protein2genome:local exon 1387111 1387345 . + . insertions 9 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387346 1387347 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387346 1387424 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387423 1387424 . + . intron_id 0 ; splice_site "AA" KQ414716.1 exonerate:protein2genome:local cds 1387425 1387540 . + . KQ414716.1 exonerate:protein2genome:local exon 1387425 1387540 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387541 1387542 . + . intron_id 2 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387541 1387619 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1387618 1387619 . + . intron_id 1 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 3 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387111 1387955 382 + . alignment_id 1 ; Query CbirOr126 ; Align 1387111 197 72 ; Align 1387192 221 153 ; Align 1387427 273 114 ; Align 1387620 311 156 ; Align 1387911 363 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr126 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 343 Query range: 196 -> 378 Target range: 1394161 -> 1395914 197 : ValLeuHisValSerGlyGlnIleAspValMetCysGlnGlyLeuArgGluIleSe : 215 :!!!!!|||:!!.!!|||||||||!!::!!:!! :!!!.!||| ...||||| IlePheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAsnIleSe 1394162 : ATATTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaatatttc : 1394216 216 : rSerThrArgLysSerAspProLeuAla<-><-><->ThrArgSerLeuValGluA : 231 | !:!!!.! !! !|||:!! |||!:!||||||:!!.!.| rIleLysAspGluLysHisArgLeuSerArgAsnThrThrLysSerLeuIleHisA 1394217 : tattaaagATGAGAAACACAGATTATCGAGAAACACCACCAAATCATTAATTCACA : 1394273 232 : rgHisGlnArgIleIleSerLeuSerAsnSerIleGluAsnPhePheSerPheVal : 249 |||||!!.|||||||||! ! !|||:!!|||||||||!:!.!!||||||!:!:!! rgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIle 1394274 : GACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACATT : 1394327 250 : AlaLeuIleGlnPheValTrpAsnThrIleValIleCysSerIleGlyLeuMetIl : 268 ||||||!!:|||!:::!!!! ||||||:!!|||||||||!!!||||||!!!:!:|| AlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGlyPheLeuIl 1394328 : GCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGATTCTTAAT : 1394384 269 : eValIleSerLeuGlyThrAspMet{G} >>>> Target Intron 1 >>>> : 277 ||||||| ! ... { } 458 bp eValIleValSerAsnIleTyrGlu{T}-+ + 1394385 : AGTAATTGTAAGtaatatttacgaa{t}at.........................a : 1394868 278 : {lu}GlyLysSerGlyIleLeuIleGlnSerIleIleProTyrIleAlaValThr : 294 {! }|||... ...|||::::::::!:!! !|||||||||:!!||| +{yr}GlyAsnIleLysThrPheIleLysThrLeuLeuPheTyrIleAlaIleThr 1394869 : g{at}ggaaatataaaaacatttataaaaacattACTCTTTTACATCGCTATCACT : 1394920 295 : LeuGluAlaPheValPheCysPheAlaGlyGluTyrLeuSerSerLysSer{L} : 312 :!!|||||||||:!!|||! !|||||||||||||||||||||!:!||| !{|} MetGluAlaPheIlePheSerPheAlaGlyGluTyrLeuSerAsnLysVal{L}++ 1394921 : ATGGAAGCATTCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAAGTT{A}gt : 1394975 313 : >>>> Target Intron 2 >>>> {ys}----SerIleGlyAspAlaAlaTyr : 319 349 bp {||}####||||||.!!:!!||||||||| ++{ys}####SerIleSerAsnAlaAlaTyr 1394976 : .........................ag{AG}TCTATCAATTAGCAATGCAGCATAT : 1395348 320 : GluThrLeuTrpTyrAspLeuSerThrLysGluCysArgIleLeuLeuLeuIleIl : 338 ...:!!! !|||||| !|||..! !!:!!!!: ! !.!|||:!!:!!|||:!!!! SerSerProTrpTyrLeuLeuAspProGlnAspArgHisIleIleIleLeuLeuMe 1395349 : AGCTCACCTTGGTACCTTCTGGATCCTCAAGACAGACATATCATTATTCTTCTCAT : 1395405 339 : eIleArgSerGlnLysArgLeuThrIleThrAlaGlyLysValMetAspLeuThrL : 357 :||||||||||||!:!|||||||||||||||||||||||| !!|||||||||:!!| tIleArgSerGlnArgArgLeuThrIleThrAlaGlyLysPheMetAspLeuSerL 1395406 : GATAAGATCTCAAAGACGATTAACAATCACCGCTGGAAAATTTATGGACTTGTCTT : 1395462 358 : euGluGlyPheThrSer >>>> Target Intron 3 >>>> ValMetLysA : 366 |||||||||||.!!!:! 387 bp ::::!:|||| euGluGlyPheAlaAsn++ ++IleLeuLysA 1395463 : TAGAAGGTTTTGCAAATgt.........................agatcTTAAAGG : 1395876 367 : laSerAlaSerTyrIleSerValLeuHisValIleTyr : 378 ||||||||||||||||||||||||||:!!!.!!!:||| laSerAlaSerTyrIleSerValLeuTyrAlaMetTyr 1395877 : CTTCTGCATCGTACATATCTGTACTGTATGCGATGTAC : 1395914 vulgar: CbirOr126 196 378 . KQ414716.1 1394161 1395914 + 343 M 28 84 G 0 9 M 52 156 S 0 1 5 0 2 I 0 454 3 0 2 S 1 2 M 34 102 S 0 1 5 0 2 I 0 345 3 0 2 S 1 2 F 0 4 M 50 150 5 0 2 I 0 383 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394162 1395914 343 + . gene_id 2 ; sequence CbirOr126 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394162 1394411 . + . KQ414716.1 exonerate:protein2genome:local exon 1394162 1394411 . + . insertions 9 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394412 1394413 . + . intron_id 1 ; splice_site "at" KQ414716.1 exonerate:protein2genome:local intron 1394412 1394869 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394868 1394869 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1394870 1394974 . + . KQ414716.1 exonerate:protein2genome:local exon 1394870 1394974 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394975 1394976 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394975 1395323 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1395322 1395323 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1395324 1395479 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395479 . + . insertions 0 ; deletions 0 ; frameshifts 4 KQ414716.1 exonerate:protein2genome:local splice5 1395480 1395481 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1395480 1395866 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1395865 1395866 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1395867 1395914 . + . KQ414716.1 exonerate:protein2genome:local exon 1395867 1395914 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394162 1395914 343 + . alignment_id 2 ; Query CbirOr126 ; Align 1394162 197 84 ; Align 1394255 225 156 ; Align 1394872 278 102 ; Align 1395330 313 150 ; Align 1395867 363 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr126 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 312 Query range: 196 -> 378 Target range: 1401021 -> 1402808 197 : ValLeuHisValSerGlyGlnIleAspValMetCysGlnGlyLeuArgGluIleSe : 215 |||||||||:!!.!! !!|||||||||:!!||||||!:!..!|||! !!!::!!|| ValLeuHisLeuGlyCysGlnIleAspIleMetCysArgAsnLeuLeuAspValSe 1401022 : GTACTTCATCTAGGATGTCAAATCGACATCATGTGCCGAAATTTGCTAGACGTTTC : 1401076 216 : rSerThrArgLysSerAspProLeuAlaThrArgSerLeuValGluArgHisGlnA : 234 |! ! !.!||| ::: ...:::.!.|||||||||. rPhe---------LysAspGlyLysGlnIleLysPhePheIleAsnArgHisGlnG 1401077 : CTTC---------AAAGACggaaaacaaataaaattcttcattaACAGACATCAGG : 1401124 235 : rgIleIleSerLeuSerAsnSerIleGluAsnPhePheSerPheValAlaLeuIle : 252 .!|||||| !!!!:!!.!.!!!||||||!!..!!|||!!!!:!:!!||||||! ! luIleIleValPheAlaGluArgIleGluLysLeuPheThrTyrMetAlaLeuSer 1401125 : AAATTATTGTTTTTGCAGAAAGAATTGAGAAACTTTTTACATACATGGCTCTCAGT : 1401178 253 : GlnPheValTrpAsnThrIleValIleCysSerIleGlyLeuMetIleValIle : 271 |||.!!|||! |||||||||:!!||||||!!!:!!|||!!!:!::!!|||||| GlnLeuValSerAsnThrIleIleIleCysCysValGlyPheLeuValValIle++ 1401179 : CAACTTGTGTCCAATACGATAATTATATGTTGCGTAGGATTTCTCGTTGTAATTgt : 1401235 272 : >>>> Target Intron 1 >>>> SerLeuGlyThrAspMetGluGlyLysSe : 280 83 bp :!!:!! !! !||| ..! ! ++AlaValHisIleAsp------AsnGlyVa 1401236 : .........................aggCAGTACATATCGAC------AATGGAGT : 1401339 281 : rGlyIleLeuIleGlnSerIleIleProTyrIleAlaValThrLeuGluAlaPheV : 299 ! !:!:|||:!!:::|||:::::: |||:::!.!:!! !||||||||||||: lProLeuLeuLeuLysSerLeuLeuPheTyrValValIleCysLeuGluAlaPheI 1401340 : TCCTCTGTTACTCAaatctcttttattttatgtgGTTATTTGTTTAGAAGCGTTTA : 1401396 300 : alPheCysPheAlaGlyGluTyrLeuSerSerLys >>>> Target Intron : 311 !!!:!||||||!.!|||||||||||||||! !||| 1004 bp leTyrCysPheValGlyGluTyrLeuSerIleLys++ 1401397 : TATACTGCTTTGTCGGAGAATATCTCAGTATCAAGgt................... : 1401434 312 : 2 >>>> SerLysSerIleGlyAspAlaAlaTyrGluThrLeuTrpTyrAspLeu : 326 |||:!! !||||||:!!.!!||||||||| !||||||||||||||| ++SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeu 1401435 : ......agAGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTA : 1402481 327 : SerThrLysGluCysArgIleLeuLeuLeuIleIleIleArgSerGlnLysArgLe : 345 !!:!!! ||| !!!:!:!!|||:!!! !:!!|||:!:|||||||||||| !!!! ArgSerThrGluSerGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPh 1402482 : CGTTCAACTGAAAGCCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTT : 1402538 346 : uThrIleThrAlaGlyLysValMetAspLeuThrLeuGluGlyPheThrSerVal{ : 364 !|||...||| |||||| ...|||:!!||||||.!!||||||:!!|||{ eThrPheThrPheGlyLysPheSerSerLeuSerLeuGluSerPheThrAlaVal{ 1402539 : CACGTttacttttggaaaattttcaagtctCTCCTTGGAAAGCTTTACGGCCGTA{ : 1402595 365 : Me} >>>> Target Intron 3 >>>> {t}LysAlaSerAlaSerTyrIle : 371 ! } 169 bp {!}|||!.!||||||||||||||| Ar}-+ +-{g}LysValSerAlaSerTyrIle 1402596 : AG}ct.........................at{G}AAAGTCTCAGCATCATATATA : 1402785 372 : SerValLeuHisValIleTyr : 378 |||||||||! !!.!:!:||| SerValLeuLeuAlaValTyr 1402786 : TCAGTACTTCTTGCAGTGTAT : 1402808 vulgar: CbirOr126 196 378 . KQ414716.1 1401021 1402808 + 312 M 20 60 G 3 0 M 51 153 5 0 2 I 0 79 3 0 2 M 5 15 G 2 0 M 33 99 5 0 2 I 0 1000 3 0 2 M 53 159 S 0 2 5 0 2 I 0 165 3 0 2 S 1 1 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401022 1402808 312 + . gene_id 3 ; sequence CbirOr126 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401022 1401234 . + . KQ414716.1 exonerate:protein2genome:local exon 1401022 1401234 . + . insertions 0 ; deletions 3 KQ414716.1 exonerate:protein2genome:local splice5 1401235 1401236 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401235 1401317 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1401316 1401317 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1401318 1401431 . + . KQ414716.1 exonerate:protein2genome:local exon 1401318 1401431 . + . insertions 0 ; deletions 2 KQ414716.1 exonerate:protein2genome:local splice5 1401432 1401433 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401432 1402435 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1402434 1402435 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402436 1402596 . + . KQ414716.1 exonerate:protein2genome:local exon 1402436 1402596 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1402597 1402598 . + . intron_id 3 ; splice_site "ct" KQ414716.1 exonerate:protein2genome:local intron 1402597 1402765 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1402764 1402765 . + . intron_id 2 ; splice_site "AT" KQ414716.1 exonerate:protein2genome:local cds 1402766 1402808 . + . KQ414716.1 exonerate:protein2genome:local exon 1402766 1402808 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401022 1402808 312 + . alignment_id 3 ; Query CbirOr126 ; Align 1401022 197 60 ; Align 1401082 220 153 ; Align 1401318 271 15 ; Align 1401333 278 99 ; Align 1402436 311 159 ; Align 1402767 365 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr126 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 221 Query range: 2 -> 197 Target range: 1390532 -> 1392022 3 : ThrSerThrIleSerProSerLeuArgIleGlyLeuGlyLeuIleGlyMetTrpPr : 21 !.!!.!!:!||||||! ! !!:!!..!||||||||| !!|||! !|||!!:||||| AsnLysSerIleSerArgProValGluIleGlyLeuArgLeuThrGlyIleTrpPr 1390533 : AACAAAAGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGGAATTTGGCC : 1390587 22 : oGlySerSerHisAlaThrPhePheTrpLeuPheTyrMetValThrLeuValValM : 40 ||||||||||:!!! !! !.!! !! ! :!! !!::!!::!! !:!!..!|||: oGlySerSerTyrGluIleIleValArgValThrTrpIleIleLeuMetThrValV 1390588 : AGGTTCATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTATGACAGTTG : 1390644 41 : etGlnTyrLeuGlnTyrSerTyrValTyrAlaHisLeuAspValArgAsp<->Pro : 57 !:||| !!!|||||| !!|||:!! !|||||||||! !!!!:!! !! alGlnIlePheGlnTyrArgTyrIleIleLysHisLeuAspGlySerAsnLeuAla 1390645 : TACAAATATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGTAATCTGGCG : 1390698 58 : LysLeuIleAspGlyLeuSerValThrLeuAspTyrThrLeuThrPheLeuLysLe : 76 !!.|||||||||.!!:!!.!!..!|||||| !|||!:!||| !!:!:::||||| AsnLeuIleAspSerValGlyThrThrLeuProTyrSerLeuLeuTyrValLysLe 1390699 : AACTTAATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTATgtcaaatt : 1390755 77 : uLeuSerLeuTrpArgAsnArg{Ar} >>>> Target Intron 1 >>>> { : 84 |::: ...||| !!!.|||{ !} 884 bp { uIleIlePheTrpThrLysArg{Gl}++ ++{ 1390756 : aattattttctggaCTAAACGT{GG}gt.........................ag{ : 1391665 85 : g}IlePheSerAspIleLeuAspAlaMetGluAspAspTrp<->AsnAspCysVal : 101 !}||||||...::::::|||! !.!|||...:!!|||||| |||..!! ! y}IlePheGluAsnMetLeuValGlyMetSerAsnAspTrpSerAsnSerSerSer 1391666 : a}atattcgaaaatatgtTAGTGGGAATGTCTAACGATTGGAGTAATTCTTCATCA : 1391717 102 : ThrAspSerTyrIleCysValMetLysSerLysAlaGlyLeuAlaHisArgCysSe : 120 ||| ! ! ! !!||| !!.!|||! !|||||||||! !||||||:!!|||! !|| ThrLysPheAspIleAsnAlaMetIleSerLysAlaGluLeuAlaTyrArgTyrSe 1391718 : ACGAAATTTGACATAAACGCCATGATAAGTAAAGCTGAACTTGCGTATCGTTATTC : 1391774 121 : rAsnAlaMetMetThrLeuAsnThrLeuSer<-><-><-><-><->AlaIlePheT : 134 |!!.!.!!!:|||!:! ! !!.!!:!!:!! ::!:!:|||! rLysValIleMetSerThrTyrAlaIleAlaValPheAlaTyrThrSerValPheP 1391775 : GAAGGTAATTATGAGCACATATGCTATTGCCGTTTTCGCTTATACCAGCGTGTTTT : 1391831 135 : yrPheIleGlyAsnTyrLeuSerHisArgAlaValAspGlyAlaProArgGluPhe : 152 :! .!! !..!:!! !!:! !! !!! ! !||| ! ! !!||||||.!! heGluPheMetArgHisAspAsnAspGlyGluTyrAspLeuLysSerArgGluLeu 1391832 : TCGAGTTTATGCGTCACGACAACGACGGCGAATATGATTTAAAGTCTCGAGAACTT : 1391885 153 : ProMetGlnValGlnPheProPheAsnAlaThrAsnSerProIlePheGluLeuIl : 171 !|||:!!:!!.!..!!|||||| ! !!!.!!!|||! !:!:!!! !:! LeuMetLysMetAspLeuProPheAlaTyrTyrLysThrProThrTyrGlnTrpVa 1391886 : TTGATGAAAATGGACCTCCCGTTTGCGTATTACAAAACACCGACGTATCAATGGGT : 1391942 172 : eValLeuGlyLeuPheLeuHisValTrpGluThrAlaThrValIleAlaMetLeuA : 190 ! !!:!!! !! !||||||!!.:!!! ! !!.!|||:!!!.!|||!.!||||||: lPheValValGlnPheLeuGlnLeuLeuIleAsnAlaSerAlaIleGlyMetLeuA 1391943 : ATTTGTTGTACAATTTCTTCAGCTGTTGATAAATGCATCTGCTATTGGTATGTTAG : 1391999 191 : snSerLeuIleLeuThrLeuVal : 197 !!:!!||||||:!!||||||||| spAlaLeuIleIleThrLeuVal 1392000 : ATGCTTTGATAATTACGTTGGTA : 1392022 vulgar: CbirOr126 2 197 . KQ414716.1 1390532 1392022 + 221 M 54 162 G 0 3 M 27 81 S 0 2 5 0 2 I 0 880 3 0 2 S 1 1 M 13 39 G 0 3 M 33 99 G 0 15 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390533 1392022 221 + . gene_id 4 ; sequence CbirOr126 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1390533 1390780 . + . KQ414716.1 exonerate:protein2genome:local exon 1390533 1390780 . + . insertions 3 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1390781 1390782 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1390781 1391664 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1391663 1391664 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1391665 1392022 . + . KQ414716.1 exonerate:protein2genome:local exon 1391665 1392022 . + . insertions 18 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390533 1392022 221 + . alignment_id 4 ; Query CbirOr126 ; Align 1390533 3 162 ; Align 1390698 57 81 ; Align 1391666 85 39 ; Align 1391708 98 99 ; Align 1391822 131 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr126 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 186 Query range: 306 -> 374 Target range: 1409037 -> 1409519 307 : LeuSerSerLysSerLysSerIleGlyAspAlaAlaTyrGluThrLeuTrpTyrAs : 325 :!!..!! !:::|||||| |||||||||.!!||||||||| !|||||||||:! IleAspPheGlnSerLysLeuIleGlyAspThrAlaTyrGluPheLeuTrpTyrAs 1409038 : ATTGATTTTcagagtaaactgattggagACACGGCGTATGAATTTCTTTGGTATAA : 1409092 326 : pLeuSerThrLysGluCysArgIleLeuLeuLeuIleIleIleArgSerGlnLysA : 344 !:!! !:!!|||||| !!|||:!!:!!||||||:!!|||:!!|||||||||||| nMetHisSerLysGluSerArgLeuMetLeuLeuValIleLeuArgSerGlnLysG 1409093 : TATGCATTCGAAGGAAAGCCGACTTATGTTGCTTGTAATACTACGATCACAGAAAG : 1409149 345 : rgLeuThrIleThrAlaGlyLysValMetAspLeuThrLeuGluGlyPheThrSer : 362 !!!!!|||...||| |||||| ...|||:!!:!!|||.!!|||.!!.!! lyPheThrPheThrPheGlyLysPheAlaSerLeuSerMetGluSerPheAlaGly 1409150 : GATTTACtttcacttttggaaaatttgcaagtCTTTCCATGGAAAGTTTTGCAGGC : 1409203 363 : >>>> Target Intron 1 >>>> ValMetLysAlaSerAlaSerTyrIle : 371 278 bp :::|||||||||||||||||||||||| ++ ++IleMetLysAlaSerAlaSerTyrIle 1409204 : gt.........................agattATGAAAGCTTCTGCATCGTATATA : 1409508 372 : SerValLeu : 374 ||||||||| SerValLeu 1409509 : TCCGTATTG : 1409519 vulgar: CbirOr126 306 374 . KQ414716.1 1409037 1409519 + 186 M 56 168 5 0 2 I 0 274 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1409038 1409519 186 + . gene_id 5 ; sequence CbirOr126 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1409038 1409205 . + . KQ414716.1 exonerate:protein2genome:local exon 1409038 1409205 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1409206 1409207 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1409206 1409483 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1409482 1409483 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409484 1409519 . + . KQ414716.1 exonerate:protein2genome:local exon 1409484 1409519 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1409038 1409519 186 + . alignment_id 5 ; Query CbirOr126 ; Align 1409038 307 168 ; Align 1409484 363 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr126 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 196 -> 310 Target range: 1408216 -> 1408635 197 : ValLeuHisValSerGlyGlnIleAspValMetCysGlnGlyLeuArgGluIleSe : 215 |||||||||:!!.!! !!|||||||||:!!||||||||| !|||!:!|||:!! ! ValLeuHisLeuGlyCysGlnIleAspIleMetCysGlnThrLeuLysGluValPr 1408217 : GTGCTTCATCTAGGTTGTCAAATCGATATTATGTGCCAGACATTAAAGGAGGTTCC : 1408271 216 : rSerThrArgLysSerAspProLeuAlaThrArgSerLeuValGluArgHisGlnA : 234 !! !! !!.!|||!!!.!. !|||! !!!!:!!...|||||||||! oTyrLysAsnLysThrGln---------LeuArgPhePheIleSerArgHisGlnG 1408272 : TTATAAGAATAAAACTCAA---------CTGAGATTCTTCATCAGCAGACATCAAC : 1408319 235 : rgIleIleSerLeuSerAsnSerIleGluAsnPhePheSerPheValAlaLeuIle : 252 :!||||||! !!!!:!!.!.!!!||||||!!..!.|||!!!!:!:!!||||||! ! lnIleIleIlePheAlaGluArgIleGluLysLeuPheThrTyrLeuAlaLeuSer 1408320 : AGATCATCATATTTGCAGAGAGAATAGAAAAACTGTTTACGTATCTAGCACTTAGT : 1408373 253 : GlnPheValTrpAsnThrIleValIleCysSerIle{Gl} >>>> Target In : 265 |||.!!:!!! !||||||:!!:!!! !|||!!!:!:{||} 86 b GlnLeuLeuSerAsnThrLeuIleThrCysCysVal{Gl}-+ 1408374 : CAACTTCTCTCGAATACCCTAATTACTTGCTGCGTG{GG}tt.............. : 1408416 266 : tron 1 >>>> {y}LeuMetIleValIleSerLeuGlyThrAspMetGluGlyL : 279 p {|}! ! !! !:!!! ! !! !!.! !.!.! .!...! ++{y}***SerAsnLeuThrLeuGlnAlaLeuGlnAsnAsnAsnG 1408417 : ...........ag{A}TGATCGAATTTAACGTTACAGGCACTACAAAATAATAATG : 1408540 280 : ysSerGlyIleLeuIleGlnSerIleIleProTyrIleAlaValThrLeuGluAla : 297 !! ! !!!:||||||:!!! !:!!:!! !|||!!:|||||| !! !|||||| lyPheLysMetLeuIleLysPheValValTyrTyrMetAlaValCysSerGluAla 1408541 : GATTTAAAATGTTGATCAAATTTGTTGTATATTACATGGCTGTGTGCTCAGAAGCG : 1408594 298 : PheValPheCysPheAlaGlyGluTyrLeuSerSerLys : 310 |||:!!!:!|||||||||||||||||||||!:!! !||| PheIleTyrCysPheAlaGlyGluTyrLeuAsnIleLys 1408595 : TTCATATACTGCTTTGCTGGAGAGTACCTTAATATCAAG : 1408635 vulgar: CbirOr126 196 310 . KQ414716.1 1408216 1408635 + 164 M 25 75 G 3 0 M 40 120 S 0 2 5 0 2 I 0 82 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408217 1408635 164 + . gene_id 6 ; sequence CbirOr126 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408217 1408413 . + . KQ414716.1 exonerate:protein2genome:local exon 1408217 1408413 . + . insertions 0 ; deletions 3 KQ414716.1 exonerate:protein2genome:local splice5 1408414 1408415 . + . intron_id 1 ; splice_site "TT" KQ414716.1 exonerate:protein2genome:local intron 1408414 1408499 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1408498 1408499 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1408500 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408500 1408635 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408217 1408635 164 + . alignment_id 6 ; Query CbirOr126 ; Align 1408217 197 75 ; Align 1408292 225 120 ; Align 1408501 266 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr126 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 84 -> 197 Target range: 1405761 -> 1406100 85 : IlePheSerAspIleLeuAspAlaMetGluAspAspTrpAsnAspCysValThrAs : 103 :!!.!!! !||||||:!!....!!||||||!!:|||!! !!. ! ! !!.!..! LeuLeuTyrAspIleIleSerThrMetGluGluAspCysLysLysTyrAlaValLe 1405762 : CTACTTTACGACATTATCTCGACCATGGAAGAAGACTGTAAAAAGTACGCTGTTCt : 1405816 104 : pSerTyrIleCysValMetLysSerLysAlaGlyLeuAlaHisArgCysSerAsnA : 122 ... ::::::...... !||| !|||:!! !|||! !!!||| uAspThrLysAsnLeuIleSerLysThrAlaHisLeuSerPheArgLeuThrAsnI 1405817 : tgatacaaaaaatttaatatcaaaaaCAGCACATCTATCTTTTCGATTAACCAATA : 1405873 123 : laMetMetThrLeuAsnThrLeuSerAlaIlePheTyrPheIleGlyAsnTyrLeu : 140 !:!!!!: !:!! !..!! !|||.!! !! !||| |||||| !! ! leValIleCysIleCysValSerSerThrAlaCysTyrAlaIleGlyValLeuAla 1405874 : TAGTGATATGTATCTGTGTATCATCCACGGCATGTTATGCAATTGGAGTTTTGGCG : 1405927 141 : SerHisArgAlaValAspGlyAlaProArgGluPheProMetGlnValGlnPhePr : 159 !!!!.|||.!! ! !||||||||||||.!! !!!::!!:!!.!.!!.|| ProGlnArgThrAsnIleThrAlaProArgGluLeuLeuIleLysMetAspLeuPr 1405928 : CCACAAAGGACTAATATAACAGCACCTCGAGAACTTTTGATAAAAATGGACTTGCC : 1405984 160 : oPheAsnAlaThrAsnSerProIlePheGluLeuIleValLeuGlyLeuPheLeuH : 178 |||||||.!!!.!||||||||||||!:!||||||:!!:!!:!! !! !!:!||| oPheAsnThrAsnAsnSerProIleTyrGluLeuValIleValLeuGlnTyrLeuC 1405985 : ATTTAATACGAACAATTCGCCTATTTACGAGCTGGTAATAGTTTTACAATACCTAT : 1406041 179 : isValTrpGluThrAlaThrValIleAlaMetLeuAsnSerLeuIleLeuThrLeu : 196 ! ! ..!|||||| !..!.!!!.!:!:!!!!:!||||||:!!|||! !:!! ysLysValSerThrAlaPheThrPheGlyValPheSerSerLeuLeuLeuMetMet 1406042 : GCAAAGTATCGACAGCTTTTACGTTTGGTGTATTCAGCAGTCTGCTTTTGATGATG : 1406095 197 : Val : 197 ||| Val 1406096 : GTA : 1406100 vulgar: CbirOr126 84 197 . KQ414716.1 1405761 1406100 + 136 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1405762 1406100 136 + . gene_id 7 ; sequence CbirOr126 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1405762 1406100 . + . KQ414716.1 exonerate:protein2genome:local exon 1405762 1406100 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1405762 1406100 136 + . alignment_id 7 ; Query CbirOr126 ; Align 1405762 85 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr126 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 2 -> 84 Target range: 1385628 -> 1385874 3 : ThrSerThrIleSerProSerLeuArgIleGlyLeuGlyLeuIleGlyMetTrpPr : 21 |||!!!! !|||!:!! ! !!|||..! !.!!||| !!|||.!!||| ||||| ThrThrIleIleAsnArgProLeuGluTyrSerLeuArgLeuPheGlyAlaTrpPr 1385629 : ACGACTATAATTAATCGTCCATTGGAATATAGCCTCCGTCTATTTGGCGCCTGGCC : 1385683 22 : oGlySerSerHisAlaThrPhePheTrpLeuPheTyrMetValThrLeuValValM : 40 |! !||||||:!!:!! !.!. ! :!!.!!!:: !..!! !:!!!.!.... oAspSerSerTyrSerPheLeuLysSerIleIleTrpSerThrIleMetAlaThrP 1385684 : AGATTCTTCCTATTCATTTCTGAAAAGTATTATTTGGTCGACGATAATGGCAAcgt : 1385740 41 : etGlnTyrLeuGlnTyrSerTyrValTyrAlaHisLeuAspValArgAspProLys : 58 .. ...||||||!!!||| ! !.!!|||:!! ! heLeuMetPheGlnTyrTrpTyrCysIleThrHisIleArgSerGlyLeuIleAsp 1385741 : ttttaatgtttcaataTTGGTATTGTATTACTCATATTAGATCAggtttaattgat : 1385794 59 : LeuIleAspGlyLeuSerValThrLeuAspTyrThrLeuThrPheLeuLysLeuLe : 77 |||:::||||||||||||:!!||||||... !!:!!|||..!||||||||||||:! LeuLeuAspGlyLeuSerIleThrLeuSerAsnSerLeuValPheLeuLysLeuIl 1385795 : ttattgGACGGATTGAGTATTACTTTATCAAATTCACTCGTCTTTCTCAAATTGAT : 1385851 78 : uSerLeuTrpArgAsnArgArg : 84 !! !:!!|||! !:!!!!!||| eIleIleTrpLeuHisSerArg 1385852 : TATTATTTGGCTTCATAGTCGG : 1385874 vulgar: CbirOr126 2 84 . KQ414716.1 1385628 1385874 + 128 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1385629 1385874 128 + . gene_id 8 ; sequence CbirOr126 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1385629 1385874 . + . KQ414716.1 exonerate:protein2genome:local exon 1385629 1385874 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1385629 1385874 128 + . alignment_id 8 ; Query CbirOr126 ; Align 1385629 3 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr126 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 84 -> 197 Target range: 1398619 -> 1398958 85 : IlePheSerAspIleLeuAspAlaMetGluAspAspTrpAsnAspCysValThrAs : 103 :!!|||||||||||||||....!!||||||!!:|||!! .!. ! ! !!.!.!! ValPheSerAspIleLeuSerThrMetGluGluAspCysGlnLysTyrAlaAlaIl 1398620 : GTATTTAGTGACATTTTATCAACCATGGAAGAGGATTGTCAGAAATATGCTGCTAT : 1398674 104 : pSerTyrIleCysValMetLysSerLysAlaGlyLeuAlaHisArgCysSerAsnA : 122 ..! ! ! :!!|||..!!.!! !.! |||::: :::::: eAspIleAsnLysLeuMetSerLysThrGlyGlnLeuSerPheTyrLeuThrSerI 1398675 : AGATATAAATAAGTTGATGTCAAAAACCGGACAgctatctttttatttaacaagcA : 1398731 123 : laMetMetThrLeuAsnThrLeuSerAlaIlePheTyrPheIleGlyAsnTyrLeu : 140 !:!:|||:!!||| !!! ! !|||||| !||||||.!.! !..!!.! ! ! leValMetSerLeuTyrMetAlaSerAlaAlaPheTyrIleThrAsnThrIleGly 1398732 : TTGTTATGTCTTTGTATATGGCATCTGCAGCATTTTACATAACTAATACTATTGGA : 1398785 141 : SerHisArgAlaValAspGlyAlaProArgGluPheProMetGlnValGlnPhePr : 159 ! !!!. !! ! !! !..!!.! !!||||||.!!! !|||:!!:!!.!.!!.|| PheGlnGlyAsnAsnAlaSerValSerArgGluLeuLeuMetLysMetAspLeuPr 1398786 : TTTCAAGGAAATAATGCTTCAGTATCTCGGGAGCTCCTTATGAAAATGGATTTGCC : 1398842 160 : oPheAsnAlaThrAsnSerProIlePheGluLeuIleValLeuGlyLeuPheLeuH : 178 ||||.!..!!!:!.!.||||||! !!:!||||||:!!||| ! !! ! !!||| oPheGluThrSerGluSerProAsnTyrGluLeuValValThrThrGlnValLeuI 1398843 : TTTCGAGACCAGCGAATCGCCGAATTACGAACTTGTAGTAACTACACAGGTCCTTA : 1398899 179 : isValTrpGluThrAlaThrValIleAlaMetLeuAsnSerLeuIleLeuThrLeu : 196 ! !! ..!..!|||..!!.! !!.! !!!|||:!!|||:!!|||! !:!! leHisLeuSerValAlaValAlaTyrGlyAlaPheAsnAlaLeuLeuLeuMetVal 1398900 : TTCACTTATCAGTGGCCGTAGCATACGGTGCATTCAATGCTCTTCTCTTAATGGTG : 1398953 197 : Val : 197 ||| Val 1398954 : GTA : 1398958 vulgar: CbirOr126 84 197 . KQ414716.1 1398619 1398958 + 112 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1398620 1398958 112 + . gene_id 9 ; sequence CbirOr126 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1398620 1398958 . + . KQ414716.1 exonerate:protein2genome:local exon 1398620 1398958 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1398620 1398958 112 + . alignment_id 9 ; Query CbirOr126 ; Align 1398620 85 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr122 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 411 Query range: 15 -> 332 Target range: 1385631 -> 1387555 16 : SerThrIleSerGluSerValGluValGlyLeuArgPheIleGlyMetTrpProAs : 34 !!!! !|||!:!... !!:!!||| !.!!||||||.!..!!||| ||||||:! ThrIleIleAsnArgProLeuGluTyrSerLeuArgLeuPheGlyAlaTrpProAs 1385632 : ACTATAATTAATCGTCCATTGGAATATAGCCTCCGTCTATTTGGCGCCTGGCCAGA : 1385686 35 : nCysThrTyrAlaAsnIleAsnTrpTrpThrTyrIleLeuSerValAlaIleMetG : 53 !! !:!!|||:!! !:!:!!. ! ! !!:: !! !:!!|||! ... pSerSerTyrSerPheLeuLysSerIleIleTrpSerThrIleMetAlaThrPheL 1385687 : TTCTTCCTATTCATTTCTGAAAAGTATTATTTGGTCGACGATAATGGCAAcgtttt : 1385743 54 : lnTyrPheGlnTyrSerTyrIleLeuGlnHisPheAspIleSerAspLeuSerVal : 71 |||||||||!!!||| !:!! |||.!! ||| ||| euMetPheGlnTyrTrpTyrCysIleThrHisIleArg---SerGlyLeuIleAsp 1385744 : taatgtttcaataTTGGTATTGTATTACTCATATTAGA---TCAggtttaattgat : 1385794 72 : ThrIleAspGlyLeuSerIleThrLeuGlyTyrSerLeuSerLeuLeuLysLeuIl : 90 :::|||||||||||||||||||||..! !!|||||| !!!!||||||||||| LeuLeuAspGlyLeuSerIleThrLeuSerAsnSerLeuValPheLeuLysLeuIl 1385795 : ttattgGACGGATTGAGTATTACTTTATCAAATTCACTCGTCTTTCTCAAATTGAT : 1385851 91 : eAsnLeuTrpPheAsnArg{Ar} >>>> Target Intron 1 >>>> {g}L : 98 |! !:!!|||.!!:!!!!!{||} 486 bp {|}! eIleIleTrpLeuHisSer{Ar}++ ++{g}T 1385852 : TATTATTTGGCTTCATAGT{CG}gt.........................ag{A}A : 1386361 99 : ysLeuTyrValIleLeuAspAlaMetAspLysAspTrpThrAspGlyIleAlaVal : 116 !!!!|||! !|||||| .!!:!: !:!!|||!! !.!:!! ! !:!!... hrPheTyrGlyIleLeuThrThrValPheGluAspCysAsnAsnTyrAlaSerThr 1386362 : CATTTTATGGCATTCTGACAACCGTATTCGAGGACTGCAATAATTATGCTTCTAcc : 1386415 117 : AspSerAspIleSerMetMetIleArgHisAlaAsnLeuSerArgGlnLeuSerAs : 135 ...::: :::|||! ! ! ! |||! |||||| !!:::::||||| ValGluAsnLysArgIleMetThrAspLysAlaMetLeuSerSerArgIleSerAs 1386416 : gttgaaaataaacgaataatgACAGATAAAGCTATGTTGTCTTCTCGtatctcaaa : 1386472 136 : nAlaMetIleMetThrAsnAlaLeuAlaValPhePheTyrThrIleGlyGlyProI : 154 | :::||| ! !:!!:!!.!! !!.!! ! |||:!! ! !!.!! !: nPheLeuIleGlyTyrPheSerIleThrPheLeuValTyrSerGlyLeuAlaLeuV 1386473 : ttttttaattggctATTTTTCGATCACGTTCCTTGTATATTCAGGACTTGCTCTAG : 1386529 155 : leLeuArgSerMetIleTyrLysAsnGluGluThrLys<->ArgGluLeuProIle : 171 !!||| !..! ! ! !!.... !! :!!||| |||:::... ||| alLeuPheAspGluAspGlnAsnGlyProValSerLysGlnArgLysPheLeuIle 1386530 : TATTATTTGATGAAGATCAGAATGGACCGGTTTCCAaacaaaggaaatttttaatt : 1386583 172 : LysMetGluPheProPheAsnValAspAsnSerProValPheGluLeuValLeuVa : 190 :::|||||||||||||||.!.!.! !|||||| :::|||::::::||||| ArgMetGluPheProPheGluAlaThrValSerProArgTyrGluIleIleLeuVa 1386584 : agaatggAATTTCCTTTCGAAGCTACAGTCTCTCCACgttatgaaattattctagt : 1386640 191 : lAlaGlnLeuPheHisAspLeuSerValAlaCysIleIleAlaMetLeuAsnSerL : 209 |...|||...... ::: !! !:!!!.!! ! ! !|||! ! !! :!!| lValGlnPheIlePheGluAlaPheIleValTyrGlyAlaAlaThrSerIleAlaL 1386641 : tgtacaatttatattcgaagcATTTATAGTTTATGGAGCAGCTACATCGATAGCCC : 1386697 210 : euLeuValThrLeu >>>> Target Intron 2 >>>> ValLeuHisValS : 218 ||:!!!.!..!||| 399 bp :!!|||||||||. euIleAlaValLeu++ ++IleLeuHisValG 1386698 : TAATTGCAGTACTAgt.........................agATATTACATGTTG : 1387123 219 : erGlyGlnIleAspIleMetLeuGlnGlyPheLeuGluIleSerAlaLysLysHis : 236 !!||||||||||||:!!:!!! !|||..!.!. !!!:|||||| !!!. ! .!. lyGlyGlnIleAspLeuLeuCysGlnAsnMetArgAspIleSerArgAsnHisGlu 1387124 : GTGGTCAGATCGATTTATTGTGTCAAAACATGAGAGACATTTCTCGTAATCATGAG : 1387177 237 : AlaArg<->SerSerLeuAlaThrIleLysIleLeuIleAsnArgHisGlnArgIl : 254 !!:! !!..! ! !||||||||| !:!!:!! !|||||||||||||| LysLysValProGlnLysLeuThrIleLysAspValValValArgHisGlnArgIl 1387178 : AAGAAAGTACCGCAAAAACTGACAATAAAGGATGTCGTTGTTAGGCATCAACGAAT : 1387234 255 : eIleAspLeuAlaGluAsnIleGluAspLeuPheSerAsnValAlaLeuLeuGlnP : 273 |||| |||:!!:!!||||||||| :!!|||!!! !!:!!:!!|||! |||| eIleArgLeuSerLysAsnIleGluThrValPheThrTyrIleSerLeuCysGlnP 1387235 : TATACGACTGTCTAAAAATATCGAGACAGTTTTTACTTATATATCATTATgccaat : 1387291 274 : heIleTrpAsnThrLeuValIleCysCysIleGlyPheLeuLeuValIle >>>> : 290 ||::: ||| ||||||||||||! !|||.!!|||:!!||||||! ! heLeuSerAsnMetLeuValIleCysPheIleSerPheValLeuValThr++ 1387292 : ttttatcgaatatgcTGGTTATCTGTTTCATAAGCTTCGTTTTGGTAACCgt.... : 1387344 291 : Target Intron 3 >>>> SerIleGlyThrGluGluGlyAlaThrValIle : 300 85 bp |||:!:..!||||||:!! !.!! !:!!||| ++SerLeuAsnThrGluGlnThrThrGlyLeuIle 1387345 : .....................agTCCTTGAACACGGAACAGACAACTGGATTAATA : 1387457 301 : ThrLysSerLeuIlePheTyrValAlaIleAlaLeuGluAlaPheValPheCysTy : 319 !|||!!!!!! !!:!|||||||||:!! !! !|||||||||:!!!!.||||| LeuLysCysPheProTyrTyrValAlaValAsnCysGluAlaPheIleLeuCysTy 1387458 : CTGAAATGTTTTCCCTATTACGTTGCTGTTAATTGTGAAGCATTCATTTTATGTTA : 1387514 320 : rAlaGlyGluTyrLeuSerAlaLysSerLysSerIleSer : 332 |.!!||||||||||||!!!:!!||| :::::: ||| rThrGlyGluTyrLeuThrSerLysValArgAsnLysSer 1387515 : TACCGGAGAATATCTAACCTCTAAGgtaagaaataaaagt : 1387555 vulgar: CbirOr122 15 332 . KQ414716.1 1385631 1387555 + 411 M 50 150 G 1 0 M 30 90 S 0 2 5 0 2 I 0 482 3 0 2 S 1 1 M 69 207 G 0 3 M 47 141 5 0 2 I 0 395 3 0 2 M 25 75 G 0 3 M 51 153 5 0 2 I 0 81 3 0 2 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1385632 1387555 411 + . gene_id 1 ; sequence CbirOr122 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1385632 1385873 . + . KQ414716.1 exonerate:protein2genome:local exon 1385632 1385873 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local splice5 1385874 1385875 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1385874 1386359 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1386358 1386359 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1386360 1386711 . + . KQ414716.1 exonerate:protein2genome:local exon 1386360 1386711 . + . insertions 3 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1386712 1386713 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1386712 1387110 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1387109 1387110 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387111 1387341 . + . KQ414716.1 exonerate:protein2genome:local exon 1387111 1387341 . + . insertions 3 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387342 1387343 . + . intron_id 3 ; splice_site "Gt" KQ414716.1 exonerate:protein2genome:local intron 1387342 1387426 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1387425 1387426 . + . intron_id 2 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387427 1387555 . + . KQ414716.1 exonerate:protein2genome:local exon 1387427 1387555 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1385632 1387555 411 + . alignment_id 1 ; Query CbirOr122 ; Align 1385632 16 150 ; Align 1385782 67 90 ; Align 1386361 98 207 ; Align 1386571 167 141 ; Align 1387111 214 75 ; Align 1387189 239 153 ; Align 1387427 290 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr122 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 287 Query range: 15 -> 214 Target range: 1390535 -> 1392022 16 : SerThrIleSerGluSerValGluValGlyLeuArgPheIleGlyMetTrpProAs : 34 !.!!:!||||||... !!||||||:!!|||||||||!!.! !|||!!:||||||.. LysSerIleSerArgProValGluIleGlyLeuArgLeuThrGlyIleTrpProGl 1390536 : AAAAGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGGAATTTGGCCAGG : 1390590 35 : nCysThrTyrAlaAsnIleAsnTrpTrpThrTyrIleLeuSerValAlaIleMetG : 53 !! :!!|||! !! !||| ! ! |||!::|||:!! !:!!.!!:!!:!:| ySerSerTyrGluIleIleValArgValThrTrpIleIleLeuMetThrValValG 1390591 : TTCATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTATGACAGTTGTAC : 1390647 54 : lnTyrPheGlnTyrSerTyrIleLeuGlnHisPheAspIleSerAspLeuSerVal : 71 || ||||||||| !!||||||:!!:!!|||.!!||| !|||:!!|||:!! ! lnIlePheGlnTyrArgTyrIleIleLysHisLeuAspGlySerAsnLeuAlaAsn 1390648 : AAATATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGTAATCTGGCGAAC : 1390701 72 : ThrIleAspGlyLeuSerIleThrLeuGlyTyrSerLeuSerLeuLeuLysLeuIl : 90 !||||||.!!:!!.!!! !|||||| !|||||||||! !! !:::|||||||| LeuIleAspSerValGlyThrThrLeuProTyrSerLeuLeuTyrValLysLeuIl 1390702 : TTAATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTATgtcaaattaat : 1390758 91 : eAsnLeuTrpPheAsnArg{Ar} >>>> Target Intron 1 >>>> {g}L : 98 | ...||| !!!.|||{ !} 884 bp {!} eIlePheTrpThrLysArg{Gl}++ ++{y}I 1390759 : tattttctggaCTAAACGT{GG}gt.........................ag{a}a : 1391666 99 : ysLeuTyrValIleLeuAspAlaMetAspLysAspTrpThrAspGlyIleAlaVal : 116 ... :::|||! !.!|||..!!!.||||||!:!:!!..! !:!!..! lePheGluAsnMetLeuValGlyMetSerAsnAspTrpSerAsnSerSerSerThr 1391667 : tattcgaaaatatgtTAGTGGGAATGTCTAACGATTGGAGTAATTCTTCATCAACG : 1391720 117 : AspSerAspIleSerMetMetIleArgHisAlaAsnLeuSerArgGlnLeuSerAs : 135 ! ! !||||||!:! ||||||!!! ! |||.!.|||:!! !!::! !|||!! LysPheAspIleAsnAlaMetIleSerLysAlaGluLeuAlaTyrArgTyrSerLy 1391721 : AAATTTGACATAAACGCCATGATAAGTAAAGCTGAACTTGCGTATCGTTATTCGAA : 1391777 136 : nAlaMetIleMetThrAsnAlaLeuAlaValPhePheTyrThr<->IleGlyGlyP : 153 .!.!!!:!!:! ||| !!|||:!!||||||||| !|||||| :!: ! ! sValIleMetSerThrTyrAlaIleAlaValPheAlaTyrThrSerValPhePheG 1391778 : GGTAATTATGAGCACATATGCTATTGCCGTTTTCGCTTATACCAGCGTGTTTTTCG : 1391834 154 : roIleLeuArgSerMetIleTyrLysAsnGluGluThrLys<->ArgGluLeuPro : 170 !.!!:!!||| ! ! ! !! .!. ! !!: !||| ||||||||| ! luPheMetArgHisAspAsnAspGlyGluTyrAspLeuLysSerArgGluLeuLeu 1391835 : AGTTTATGCGTCACGACAACGACGGCGAATATGATTTAAAGTCTCGAGAACTTTTG : 1391888 171 : IleLysMetGluPheProPheAsnValAspAsnSerProValPheGluLeuValLe : 189 !!:||||||!!:.!!|||||| ! !!!!.!!!|||..!!:!:!!! !|||!! MetLysMetAspLeuProPheAlaTyrTyrLysThrProThrTyrGlnTrpValPh 1391889 : ATGAAAATGGACCTCCCGTTTGCGTATTACAAAACACCGACGTATCAATGGGTATT : 1391945 190 : uValAlaGlnLeuPheHisAspLeuSerValAlaCysIleIleAlaMetLeuAsnS : 208 !|||!.!|||!!!.!!!!. |||! ! !|||! ! !|||!.!||||||:!!: eValValGlnPheLeuGlnLeuLeuIleAsnAlaSerAlaIleGlyMetLeuAspA 1391946 : TGTTGTACAATTTCTTCAGCTGTTGATAAATGCATCTGCTATTGGTATGTTAGATG : 1392002 209 : erLeuLeuValThrLeuVal : 214 !!|||:!!:!!||||||||| laLeuIleIleThrLeuVal 1392003 : CTTTGATAATTACGTTGGTA : 1392022 vulgar: CbirOr122 15 214 . KQ414716.1 1390535 1392022 + 287 M 81 243 S 0 2 5 0 2 I 0 880 3 0 2 S 1 1 M 52 156 G 0 3 M 17 51 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390536 1392022 287 + . gene_id 2 ; sequence CbirOr122 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1390536 1390780 . + . KQ414716.1 exonerate:protein2genome:local exon 1390536 1390780 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1390781 1390782 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1390781 1391664 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1391663 1391664 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1391665 1392022 . + . KQ414716.1 exonerate:protein2genome:local exon 1391665 1392022 . + . insertions 6 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390536 1392022 287 + . alignment_id 2 ; Query CbirOr122 ; Align 1390536 16 243 ; Align 1391666 98 156 ; Align 1391825 150 51 ; Align 1391879 167 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr122 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 239 Query range: 243 -> 327 Target range: 1401096 -> 1401431 244 : IleLysIleLeuIleAsnArgHisGlnArgIleIleAspLeuAlaGluAsnIleGl : 262 ||||||......|||||||||||||||..!||||||! !!!!||||||!..||||| IleLysPhePheIleAsnArgHisGlnGluIleIleValPheAlaGluArgIleGl 1401097 : ataaaattcttcattaACAGACATCAGGAAATTATTGTTTTTGCAGAAAGAATTGA : 1401151 263 : uAspLeuPheSerAsnValAlaLeuLeuGlnPheIleTrpAsnThrLeuValIleC : 281 | ! ||||||!!! !!:!!|||||| !|||.!!:!:! ||||||:!!:!!|||| uLysLeuPheThrTyrMetAlaLeuSerGlnLeuValSerAsnThrIleIleIleC 1401152 : GAAACTTTTTACATACATGGCTCTCAGTCAACTTGTGTCCAATACGATAATTATAT : 1401208 282 : ysCysIleGlyPheLeuLeuValIle >>>> Target Intron 1 >>>> S : 290 |||||:!!|||||||||:!!|||||| 83 bp : ysCysValGlyPheLeuValValIle++ ++A 1401209 : GTTGCGTAGGATTTCTCGTTGTAATTgt.........................agg : 1401318 291 : erIleGlyThrGluGluGlyAlaThrValIleThrLysSerLeuIlePheTyrVal : 308 !!:!! !! !!!:.!.|||!.! !!:!!:!! !|||||||||:::||||||||| laValHisIleAspAsnGlyValProLeuLeuLeuLysSerLeuLeuPheTyrVal 1401319 : CAGTACATATCGACAATGGAGTTCCTCTGTTACTCAaatctcttttattttatgtg : 1401372 309 : AlaIleAlaLeuGluAlaPheValPheCysTyrAlaGlyGluTyrLeuSerAlaLy : 327 !.!|||..!||||||||||||:!!!:!|||!:!!.!||||||||||||||| !|| ValIleCysLeuGluAlaPheIleTyrCysPheValGlyGluTyrLeuSerIleLy 1401373 : GTTATTTGTTTAGAAGCGTTTATATACTGCTTTGTCGGAGAATATCTCAGTATCAA : 1401429 328 : s : 327 | s 1401430 : G : 1401431 vulgar: CbirOr122 243 327 . KQ414716.1 1401096 1401431 + 239 M 46 138 5 0 2 I 0 79 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401097 1401431 239 + . gene_id 3 ; sequence CbirOr122 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401097 1401234 . + . KQ414716.1 exonerate:protein2genome:local exon 1401097 1401234 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401235 1401236 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401235 1401317 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1401316 1401317 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1401318 1401431 . + . KQ414716.1 exonerate:protein2genome:local exon 1401318 1401431 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401097 1401431 239 + . alignment_id 3 ; Query CbirOr122 ; Align 1401097 244 138 ; Align 1401318 290 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr122 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 225 Query range: 213 -> 327 Target range: 1394161 -> 1394970 214 : ValLeuHisValSerGlyGlnIleAspIleMetLeuGlnGlyPheLeuGluIleSe : 232 :!!!!!|||:!!.!!|||||||||!!:!!::!!! !:!!!.!... ...||||| IlePheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAsnIleSe 1394162 : ATATTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaatatttc : 1394216 233 : rAlaLys<->LysHisAlaArgSerSerLeuAlaThrIleLysIleLeuIleAsnA : 250 | ||| :!! ! !|||! !||| ! !|||! !||| !||||||:!!| rIleLysAspGluLysHisArgLeuSerArgAsnThrThrLysSerLeuIleHisA 1394217 : tattaaagATGAGAAACACAGATTATCGAGAAACACCACCAAATCATTAATTCACA : 1394273 251 : rgHisGlnArgIleIleAspLeuAlaGluAsnIleGluAspLeuPheSerAsnVal : 268 |||||!!.||||||||| ! !:!!!!:::!||||||..!||||||||| !!:!! rgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIle 1394274 : GACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACATT : 1394327 269 : AlaLeuLeuGlnPheIleTrpAsnThrLeuValIleCysCysIleGly{Ph} >> : 285 ||||||:!!|||!:::!!!! |||||||||||||||||||||||||||{||} AlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGly{Ph}-+ 1394328 : GCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGA{TT}ct.. : 1394382 286 : >> Target Intron 1 >>>> {e}LeuLeuValIleSerIleGlyThrGluG : 295 464 bp {|}||||||::: :!!.!!..!|||!:: +-{e}LeuLeuLeu***AlaPheAsnThrAspG 1394383 : .......................at{t}ttattgttgtaGGCATTTAATACAGatg : 1394872 296 : luGlyAlaThrValIleThrLysSerLeuIlePheTyrValAlaIleAlaLeuGlu : 313 ... ...... |||:::|||:!!||||||:!!||||||.!!:!!||| lyAsnIleLysThrPheIleLysThrLeuLeuPheTyrIleAlaIleThrMetGlu 1394873 : gaaatataaaaacatttataaaaacattACTCTTTTACATCGCTATCACTATGGAA : 1394926 314 : AlaPheValPheCysTyrAlaGlyGluTyrLeuSerAlaLys : 327 ||||||:!!|||! !!:!|||||||||||||||||| !||| AlaPheIlePheSerPheAlaGlyGluTyrLeuSerAsnLys 1394927 : GCATTCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAA : 1394970 vulgar: CbirOr122 213 327 . KQ414716.1 1394161 1394970 + 225 M 21 63 G 0 3 M 50 150 S 0 2 5 0 2 I 0 460 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394162 1394970 225 + . gene_id 4 ; sequence CbirOr122 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394162 1394379 . + . KQ414716.1 exonerate:protein2genome:local exon 1394162 1394379 . + . insertions 3 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394380 1394381 . + . intron_id 1 ; splice_site "CT" KQ414716.1 exonerate:protein2genome:local intron 1394380 1394843 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394842 1394843 . + . intron_id 0 ; splice_site "at" KQ414716.1 exonerate:protein2genome:local cds 1394844 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394844 1394970 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394162 1394970 225 + . alignment_id 4 ; Query CbirOr122 ; Align 1394162 214 63 ; Align 1394228 235 150 ; Align 1394845 286 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr122 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 194 Query range: 327 -> 395 Target range: 1395323 -> 1395914 328 : SerLysSerIleSerAspAlaAlaTyrGluCysPheTrpTyrAspLeuThrProSe : 346 ||| !|||||||||:!!|||||||||...! !|||||| !||| !|||.. SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 347 : rGluSerArgIleLeuMetPheLeuMetLeuArgAlaGlnLysArgLeuThrIleT : 365 !!!:!!!!.!|||:!!!!:.!!||||||:!!|||:!!|||!:!||||||||||||| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 366 : hrAlaGlyLysIleThrAspLeuSerLeuGluGlyPheThrThr >>>> Targe : 380 |||||||||||.!!! !|||||||||||||||||||||.!!!.! hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsn++ 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATgt.......... : 1395482 381 : t Intron 1 >>>> IleMetLysSerSerAlaSerTyrIleSerValLeuCys : 392 387 bp |||:!:|||:!!||||||||||||||||||||||||! ! ++IleLeuLysAlaSerAlaSerTyrIleSerValLeuTyr 1395483 : ...............agatcTTAAAGGCTTCTGCATCGTACATATCTGTACTGTAT : 1395903 393 : AlaPheTyr : 395 |||.!.||| AlaMetTyr 1395904 : GCGATGTAC : 1395914 vulgar: CbirOr122 327 395 . KQ414716.1 1395323 1395914 + 194 M 52 156 5 0 2 I 0 383 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395914 194 + . gene_id 5 ; sequence CbirOr122 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1395324 1395479 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395479 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1395480 1395481 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1395480 1395866 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1395865 1395866 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1395867 1395914 . + . KQ414716.1 exonerate:protein2genome:local exon 1395867 1395914 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395914 194 + . alignment_id 5 ; Query CbirOr122 ; Align 1395324 328 156 ; Align 1395867 380 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr122 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 243 -> 327 Target range: 1408291 -> 1408635 244 : IleLysIleLeuIleAsnArgHisGlnArgIleIleAspLeuAlaGluAsnIleGl : 262 :!:!:!.!!!!!|||!:!|||||||||!:!|||||| !!!||||||!..||||| LeuArgPhePheIleSerArgHisGlnGlnIleIleIlePheAlaGluArgIleGl 1408292 : CTGAGATTCTTCATCAGCAGACATCAACAGATCATCATATTTGCAGAGAGAATAGA : 1408346 263 : uAspLeuPheSerAsnValAlaLeuLeuGlnPheIleTrpAsnThrLeuValIleC : 281 | ! ||||||!!! !!:!!|||||| !|||.!!:!!! !|||||||||:!!! !| uLysLeuPheThrTyrLeuAlaLeuSerGlnLeuLeuSerAsnThrLeuIleThrC 1408347 : AAAACTGTTTACGTATCTAGCACTTAGTCAACTTCTCTCGAATACCCTAATTACTT : 1408403 282 : ys{Cy} >>>> Target Intron 1 >>>> {s}IleGlyPheLeuLeuVal : 288 ||{!!} 92 bp { } !..! !||| !:!! ys{**}-- ++{*}***SerAsnLeuThrLeu 1408404 : GC{TG}cg.........................ag{A}TGATCGAATTTAACGTTA : 1408516 289 : IleSerIleGlyThrGluGluGlyAlaThrValIleThrLysSerLeuIlePheTy : 307 :!!:!! !!.!.!..!.||| !! !:!!:!:! !|||! !:!!:!!!:!|| GlnAlaLeuGlnAsnAsnAsnGlyPheLysMetLeuIleLysPheValValTyrTy 1408517 : CAGGCACTACAAAATAATAATGGATTTAAAATGTTGATCAAATTTGTTGTATATTA : 1408573 308 : rValAlaIleAlaLeuGluAlaPheValPheCysTyrAlaGlyGluTyrLeuSerA : 326 |:!!|||:!:..!! !|||||||||:!!!:!|||!:!|||||||||||||||!:! rMetAlaValCysSerGluAlaPheIleTyrCysPheAlaGlyGluTyrLeuAsnI 1408574 : CATGGCTGTGTGCTCAGAAGCGTTCATATACTGCTTTGCTGGAGAGTACCTTAATA : 1408630 327 : laLys : 327 !||| leLys 1408631 : TCAAG : 1408635 vulgar: CbirOr122 243 327 . KQ414716.1 1408291 1408635 + 143 M 38 114 S 0 2 5 0 2 I 0 88 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408292 1408635 143 + . gene_id 6 ; sequence CbirOr122 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408292 1408407 . + . KQ414716.1 exonerate:protein2genome:local exon 1408292 1408407 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408408 1408409 . + . intron_id 1 ; splice_site "CG" KQ414716.1 exonerate:protein2genome:local intron 1408408 1408499 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1408498 1408499 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1408500 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408500 1408635 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408292 1408635 143 + . alignment_id 6 ; Query CbirOr122 ; Align 1408292 244 114 ; Align 1408501 283 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr122 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 98 -> 214 Target range: 1405764 -> 1406100 99 : LeuTyrValIleLeuAspAlaMetAspLysAspTrpThrAspGlyIleAlaValAs : 117 ||||||! !|||:!!....!!|||!!::!!|||!! ! ! ! ! !!.!:::|| LeuTyrAspIleIleSerThrMetGluGluAspCysLysLysTyrAlaValLeuAs 1405765 : CTTTACGACATTATCTCGACCATGGAAGAAGACTGTAAAAAGTACGCTGTTCttga : 1405819 118 : pSerAspIleSerMetMetIleArgHisAlaAsnLeuSerArgGlnLeuSerAsnA : 136 |::: ::::::::: ::: |||:!!|||||| !!:!|||!!!||| pThrLys---AsnLeuIleSerLysThrAlaHisLeuSerPheArgLeuThrAsnI 1405820 : tacaaaa---aatttaatatcaaaaaCAGCACATCTATCTTTTCGATTAACCAATA : 1405873 137 : laMetIleMetThrAsnAlaLeuAlaValPhePheTyrThrIleGlyGlyProIle : 154 !:!!||| ! ! !!.!! !:!!..! ! !|||.!!|||||| leValIleCysIleCysValSerSerThrAlaCysTyrAlaIleGly--------- 1405874 : TAGTGATATGTATCTGTGTATCATCCACGGCATGTTATGCAATTGGA--------- : 1405921 155 : LeuArgSerMetIleTyrLysAsnGluGluThrLysArgGluLeuProIleLysMe : 173 :!! !:!! ! ! ||| ! !.!! ||||||||| !|||||||| ValLeuAlaProGlnArgThrAsnIleThrAlaProArgGluLeuLeuIleLysMe 1405922 : GTTTTGGCGCCACAAAGGACTAATATAACAGCACCTCGAGAACTTTTGATAAAAAT : 1405975 174 : tGluPheProPheAsnValAspAsnSerProValPheGluLeuValLeuValAlaG : 192 |!!:!!.|||||||||..!:!!|||||||||:!!!:!|||||||||:!!||| !| tAspLeuProPheAsnThrAsnAsnSerProIleTyrGluLeuValIleValLeuG 1405976 : GGACTTGCCATTTAATACGAACAATTCGCCTATTTACGAGCTGGTAATAGTTTTAC : 1406032 193 : lnLeuPheHisAspLeuSerValAlaCysIleIleAlaMetLeuAsnSerLeuLeu : 210 ||! !.!. ! ! :!!|||..!|||! !! .!!!.!:!:!!!!:!||||||||| lnTyrLeuCysLysValSerThrAlaPheThrPheGlyValPheSerSerLeuLeu 1406033 : AATACCTATGCAAAGTATCGACAGCTTTTACGTTTGGTGTATTCAGCAGTCTGCTT : 1406086 211 : ValThrLeuVal : 214 :!!! !:!!||| LeuMetMetVal 1406087 : TTGATGATGGTA : 1406100 vulgar: CbirOr122 98 214 . KQ414716.1 1405764 1406100 + 117 M 21 63 G 1 0 M 31 93 G 3 0 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1405765 1406100 117 + . gene_id 7 ; sequence CbirOr122 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1405765 1406100 . + . KQ414716.1 exonerate:protein2genome:local exon 1405765 1406100 . + . insertions 0 ; deletions 4 KQ414716.1 exonerate:protein2genome:local similarity 1405765 1406100 117 + . alignment_id 7 ; Query CbirOr122 ; Align 1405765 99 63 ; Align 1405828 121 93 ; Align 1405921 155 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr125 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 374 Query range: 199 -> 381 Target range: 1394161 -> 1395914 200 : ValLeuHisIleSerGlyGlnIleAspIleMetCysGlnGluLeuArgGluIleSe : 218 :!!!!!||||||.!!|||||||||!!:!!::!! :!!! ||| ...||||| IlePheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAsnIleSe 1394162 : ATATTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaatatttc : 1394216 219 : rSerThrSerLysProTyrSerLeuSer<-><-><->ThrLysSerLeuIleThrA : 234 | ..!:!! !:!!!!!|||||| ||||||||||||||| !| rIleLysAspGluLysHisArgLeuSerArgAsnThrThrLysSerLeuIleHisA 1394217 : tattaaagATGAGAAACACAGATTATCGAGAAACACCACCAAATCATTAATTCACA : 1394273 235 : rgHisGlnLysIleIleLeuLeuSerAsnAsnValGluAsnPhePheSerPheVal : 252 |||||!!.::!||||||:!! !|||:!!::!:!!|||!:!.!!||||||!:!:!! rgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIle 1394274 : GACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACATT : 1394327 253 : GlyLeuLeuGlnPheValTrpAsnThrPheValIleCysCysIleGlyPheMetAl : 271 !.!|||:!!|||!:::!!!! ||||||.!!|||||||||||||||||||||:!: AlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGlyPheLeuIl 1394328 : GCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGATTCTTAAT : 1394384 272 : aValIleSerLeuAsp{Me} >>>> Target Intron 1 >>>> {t}---- : 278 !|||||| ! :::{||} 453 bp {|}#### eValIleValSerAsn{Me}-+ ++{t}#### 1394385 : AGTAATTGTAAGtaat{at}tt.........................ag{G}CATT : 1394860 279 : -AsnThrGluGlyLysSerGlyValIleIleGlnPheIleIleProSerValAlaV : 296 #||||||!::|||... ......|||::: ::!:!! !! !:!!|||: #AsnThrAspGlyAsnIleLysThrPheIleLysThrLeuLeuPheTyrIleAlaI 1394861 : TAATACAGatggaaatataaaaacatttataaaaacattACTCTTTTACATCGCTA : 1394917 297 : alThrIleGluAlaPheValPheCysPheAlaGlyGluTyrLeuSerThrLys > : 314 !!|||!!:|||||||||:!!|||! !|||||||||||||||||||||!.!||| leThrMetGluAlaPheIlePheSerPheAlaGlyGluTyrLeuSerAsnLys++ 1394918 : TCACTATGGAAGCATTCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAAgt. : 1394973 315 : >>> Target Intron 2 >>>> SerLysSerIleGlyAspAlaAlaTyrGlu : 323 353 bp ||| !||||||.!!:!!|||||||||... ++SerLeuSerIleSerAsnAlaAlaTyrSer 1394974 : ........................agAGTCTATCAATTAGCAATGCAGCATATAGC : 1395351 324 : AlaValTrpTyrAspLeuSerThrSerGluCysArgValLeuLeuPheLeuIleLe : 342 :!! !|||||| !|||..! !!..!!!: ! !.!:!!:!!:!!.!!|||!!::! SerProTrpTyrLeuLeuAspProGlnAspArgHisIleIleIleLeuLeuMetIl 1395352 : TCACCTTGGTACCTTCTGGATCCTCAAGACAGACATATCATTATTCTTCTCATGAT : 1395408 343 : uArgSerGlnLysArgLeuThrIleThrAlaGlyLysValThrAspLeuThrLeuG : 361 !|||||||||!:!|||||||||||||||||||||||| !!! !||||||:!!|||| eArgSerGlnArgArgLeuThrIleThrAlaGlyLysPheMetAspLeuSerLeuG 1395409 : AAGATCTCAAAGACGATTAACAATCACCGCTGGAAAATTTATGGACTTGTCTTTAG : 1395465 362 : luAlaPheThrThr >>>> Target Intron 3 >>>> ValMetLysAlaS : 370 ||!.!|||.!!!.! 387 bp ::::!:||||||| luGlyPheAlaAsn++ ++IleLeuLysAlaS 1395466 : AAGGTTTTGCAAATgt.........................agatcTTAAAGGCTT : 1395879 371 : erAlaSerTyrIleSerValLeuHisAlaMetTyr : 381 |||||||||||||||||||||||:!!||||||||| erAlaSerTyrIleSerValLeuTyrAlaMetTyr 1395880 : CTGCATCGTACATATCTGTACTGTATGCGATGTAC : 1395914 vulgar: CbirOr125 199 381 . KQ414716.1 1394161 1395914 + 374 M 28 84 G 0 9 M 49 147 S 0 2 5 0 2 I 0 449 3 0 2 S 1 1 F 0 5 M 36 108 5 0 2 I 0 349 3 0 2 M 52 156 5 0 2 I 0 383 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394162 1395914 374 + . gene_id 1 ; sequence CbirOr125 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394162 1394403 . + . KQ414716.1 exonerate:protein2genome:local exon 1394162 1394403 . + . insertions 9 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394404 1394405 . + . intron_id 1 ; splice_site "tt" KQ414716.1 exonerate:protein2genome:local intron 1394404 1394856 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394855 1394856 . + . intron_id 0 ; splice_site "aG" KQ414716.1 exonerate:protein2genome:local cds 1394857 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394857 1394970 . + . insertions 0 ; deletions 0 ; frameshifts 5 KQ414716.1 exonerate:protein2genome:local splice5 1394971 1394972 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394971 1395323 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1395322 1395323 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1395324 1395479 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395479 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1395480 1395481 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1395480 1395866 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1395865 1395866 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1395867 1395914 . + . KQ414716.1 exonerate:protein2genome:local exon 1395867 1395914 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394162 1395914 374 + . alignment_id 1 ; Query CbirOr125 ; Align 1394162 200 84 ; Align 1394255 228 147 ; Align 1394863 278 108 ; Align 1395324 314 156 ; Align 1395867 366 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr125 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 334 Query range: 199 -> 380 Target range: 1408216 -> 1409528 200 : ValLeuHisIleSerGlyGlnIleAspIleMetCysGlnGluLeuArgGluIleSe : 218 |||||||||:!!.!! !!||||||||||||||||||||| !|||!:!|||:!! ! ValLeuHisLeuGlyCysGlnIleAspIleMetCysGlnThrLeuLysGluValPr 1408217 : GTGCTTCATCTAGGTTGTCAAATCGATATTATGTGCCAGACATTAAAGGAGGTTCC : 1408271 219 : rSerThrSerLysProTyrSerLeuSerThrLysSerLeuIleThrArgHisGlnL : 237 !! !! !!:!||| !..! !!:!! !!!!|||!:!|||||||||: oTyrLysAsnLys---------ThrGlnLeuArgPhePheIleSerArgHisGlnG 1408272 : TTATAAGAATAAA---------ACTCAACTGAGATTCTTCATCAGCAGACATCAAC : 1408319 238 : ysIleIleLeuLeuSerAsnAsnValGluAsnPhePheSerPheValGlyLeuLeu : 255 !!||||||:!!!!!:!!.!.!..:!!|||!!..!.|||!!!!:!:!!!.!||| ! lnIleIleIlePheAlaGluArgIleGluLysLeuPheThrTyrLeuAlaLeuSer 1408320 : AGATCATCATATTTGCAGAGAGAATAGAAAAACTGTTTACGTATCTAGCACTTAGT : 1408373 256 : GlnPheValTrpAsnThrPheValIleCysCysIle{Gl} >>>> Target In : 268 |||.!!:!!! !||||||.!.:!!! !||||||:!:{||} 86 b GlnLeuLeuSerAsnThrLeuIleThrCysCysVal{Gl}-+ 1408374 : CAACTTCTCTCGAATACCCTAATTACTTGCTGCGTG{GG}tt.............. : 1408416 269 : tron 1 >>>> {y}PheMetAlaValIleSerLeuAspMetAsnThrGluGlyL : 282 p {|}! ! !:!!! ! !! !! :!:.!.!.!.!...! ++{y}***SerAsnLeuThrLeuGlnAlaLeuGlnAsnAsnAsnG 1408417 : ...........ag{A}TGATCGAATTTAACGTTACAGGCACTACAAAATAATAATG : 1408540 283 : ysSerGlyValIleIleGlnPheIleIleProSerValAlaValThrIleGluAla : 300 !! ! !:!!:!:|||:!!|||:!!:!! !! !:!!|||||| ! !|||||| lyPheLysMetLeuIleLysPheValValTyrTyrMetAlaValCysSerGluAla 1408541 : GATTTAAAATGTTGATCAAATTTGTTGTATATTACATGGCTGTGTGCTCAGAAGCG : 1408594 301 : PheValPheCysPheAlaGlyGluTyrLeuSerThrLys >>>> Target Int : 314 |||:!!!:!|||||||||||||||||||||!:!! !||| 414 b PheIleTyrCysPheAlaGlyGluTyrLeuAsnIleLys++ 1408595 : TTCATATACTGCTTTGCTGGAGAGTACCTTAATATCAAGgt............... : 1408638 315 : ron 2 >>>> SerLysSerIleGlyAspAlaAlaTyrGluAlaValTrpTyrAs : 328 p |||||| |||||||||.!!||||||||| !:!!||||||:! ++SerLysLeuIleGlyAspThrAlaTyrGluPheLeuTrpTyrAs 1408639 : ..........agagtaaactgattggagACACGGCGTATGAATTTCTTTGGTATAA : 1409092 329 : pLeuSerThrSerGluCysArgValLeuLeuPheLeuIleLeuArgSerGlnLysA : 347 !:!! !:!!!.!||| !!|||:!!:!!|||.!!:!!|||||||||||||||||| nMetHisSerLysGluSerArgLeuMetLeuLeuValIleLeuArgSerGlnLysG 1409093 : TATGCATTCGAAGGAAAGCCGACTTATGTTGCTTGTAATACTACGATCACAGAAAG : 1409149 348 : rgLeuThrIleThrAlaGlyLysValThrAspLeuThrLeuGluAlaPheThrThr : 365 !!!!!|||...||| |||||| ......|||:!!:!!|||::!|||.!! ! lyPheThrPheThrPheGlyLysPheAlaSerLeuSerMetGluSerPheAlaGly 1409150 : GATTTACtttcacttttggaaaatttgcaagtCTTTCCATGGAAAGTTTTGCAGGC : 1409203 366 : >>>> Target Intron 3 >>>> ValMetLysAlaSerAlaSerTyrIle : 374 278 bp :::|||||||||||||||||||||||| ++ ++IleMetLysAlaSerAlaSerTyrIle 1409204 : gt.........................agattATGAAAGCTTCTGCATCGTATATA : 1409508 375 : SerValLeuHisAlaMet : 380 |||||||||! !|||||| SerValLeuLeuAlaMet 1409509 : TCCGTATTGCTCGCAATG : 1409528 vulgar: CbirOr125 199 380 . KQ414716.1 1408216 1409528 + 334 M 23 69 G 3 0 M 42 126 S 0 2 5 0 2 I 0 82 3 0 2 S 1 1 M 45 135 5 0 2 I 0 410 3 0 2 M 52 156 5 0 2 I 0 274 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408217 1409528 334 + . gene_id 2 ; sequence CbirOr125 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408217 1408413 . + . KQ414716.1 exonerate:protein2genome:local exon 1408217 1408413 . + . insertions 0 ; deletions 3 KQ414716.1 exonerate:protein2genome:local splice5 1408414 1408415 . + . intron_id 1 ; splice_site "TT" KQ414716.1 exonerate:protein2genome:local intron 1408414 1408499 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1408498 1408499 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1408500 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408500 1408635 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408636 1408637 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408636 1409049 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1409048 1409049 . + . intron_id 1 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409050 1409205 . + . KQ414716.1 exonerate:protein2genome:local exon 1409050 1409205 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1409206 1409207 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1409206 1409483 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1409482 1409483 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409484 1409528 . + . KQ414716.1 exonerate:protein2genome:local exon 1409484 1409528 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408217 1409528 334 + . alignment_id 2 ; Query CbirOr125 ; Align 1408217 200 69 ; Align 1408286 226 126 ; Align 1408501 269 135 ; Align 1409050 314 156 ; Align 1409484 366 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr125 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 322 Query range: 2 -> 272 Target range: 1385628 -> 1387338 3 : ThrSerProIleSerProLeuLeuArgValGlyLeuSerLeuIleGlyMetTrpPr : 21 |||!!! !|||!:!! !! !|||..! !.!!||| !!|||.!!||| ||||| ThrThrIleIleAsnArgProLeuGluTyrSerLeuArgLeuPheGlyAlaTrpPr 1385629 : ACGACTATAATTAATCGTCCATTGGAATATAGCCTCCGTCTATTTGGCGCCTGGCC : 1385683 22 : oAspThrSerTyrGlyThrLeuSerTrpLeuPheTyrMetMetThrValValValM : 40 ||||:!!||||||..! !|||!.! ! :!!.!!!:: !! !! !:!!!.!.... oAspSerSerTyrSerPheLeuLysSerIleIleTrpSerThrIleMetAlaThrP 1385684 : AGATTCTTCCTATTCATTTCTGAAAAGTATTATTTGGTCGACGATAATGGCAAcgt : 1385740 41 : etGlnTyrPheGlnTyrSerPheValTyrAlaHisLeuAspPheAsnAsnLeuThr : 58 .. |||||||||!!!!:! ! !.!!|||:!! :::...||| heLeuMetPheGlnTyrTrpTyrCysIleThrHisIleArg---SerGlyLeuIle 1385741 : ttttaatgtttcaataTTGGTATTGTATTACTCATATTAGA---TCAggtttaatt : 1385791 59 : LysLeuMetAspGlyLeuGlyLeuThrLeuAspTyrThrLeuThrIlePheLysLe : 77 |||:::|||||||||.!!:!!||||||... !!:!!|||..!.!!.!!||||| AspLeuLeuAspGlyLeuSerIleThrLeuSerAsnSerLeuValPheLeuLysLe 1385792 : gatttattgGACGGATTGAGTATTACTTTATCAAATTCACTCGTCTTTCTCAAATT : 1385848 78 : uLeuSerLeuArgPheAsnHis{Ar} >>>> Target Intron 1 >>>> { : 85 |:!!! !:!! !!.!!:!! !{||} 486 bp { uIleIleIleTrpLeuHisSer{Ar}++ ++{ 1385849 : GATTATTATTTGGCTTCATAGT{CG}gt.........................ag{ : 1386360 86 : g}IlePheAlaLysIleLeuAlaAlaIleAspLysAspValLysAspCysThrSer : 103 |}! !||| ! ||||||.!!.!!:!! !:!!||| !!!.:!!! !.!!||| g}ThrPheTyrGlyIleLeuThrThrValPheGluAspCysAsnAsnTyrAlaSer 1386361 : A}ACATTTTATGGCATTCTGACAACCGTATTCGAGGACTGCAATAATTATGCTTCT : 1386412 104 : GluMet<->HisGluCysIleMetThrSerLysAlaAsnLeuAlaGlnArgCysSe : 121 ::: :::::: |||||||||..!||||||! |||:!!...||| || ThrValGluAsnLysArgIleMetThrAspLysAlaMetLeuSerSerArgIleSe 1386413 : AccgttgaaaataaacgaataatgACAGATAAAGCTATGTTGTCTTCTCGtatctc : 1386469 122 : rAsnAlaIleIleSerValAsnAlaIleAlaThrValLeuTyrPheIleAspSerL : 140 |||| :::|||... ! !:!!|||.!! !:!!:!!|||! ! !:!!| rAsnPheLeuIleGlyTyrPheSerIleThrPheLeuValTyrSerGlyLeuAlaL 1386470 : aaattttttaattggctATTTTTCGATCACGTTCCTTGTATATTCAGGACTTGCTC : 1386526 141 : euVal<-><->ArgArgArgMetValSerGluAspGlyGlnPheArgGluPhePro : 156 ||||| !..! !..! !.!! !! !..!::: |||:::||| euValLeuPheAspGluAspGlnAsnGlyProValSerLysGlnArgLysPheLeu 1386527 : TAGTATTATTTGATGAAGATCAGAATGGACCGGTTTCCAaacaaaggaaattttta : 1386580 157 : ValGlnValLysPheProPheGluAlaHisGluSerProIleTyrGluPheAlaVa : 175 ::::::::::!!||||||||||||||| ! |||||| ||||||... :: IleArgMetGluPheProPheGluAlaThrValSerProArgTyrGluIleIleLe 1386581 : attagaatggAATTTCCTTTCGAAGCTACAGTCTCTCCACgttatgaaattattct : 1386637 176 : lValGlyLeuPhePheHisValLeuGluThrAlaThrValIleAlaMetLeuAsnA : 194 :||| |||... ! ! !!.! !! ! !|||! ! !! | uValValGlnPheIlePheGluAlaPheIleValTyrGlyAlaAlaThrSerIleA 1386638 : agttgtacaatttatattcgaagcATTTATAGTTTATGGAGCAGCTACATCGATAG : 1386694 195 : laLeuIleLeuThrLeu >>>> Target Intron 2 >>>> ValLeuHisI : 203 |||||||| !..!||| 399 bp :!!||||||: laLeuIleAlaValLeu++ ++IleLeuHisV 1386695 : CCCTAATTGCAGTACTAgt.........................agATATTACATG : 1387120 204 : leSerGlyGlnIleAspIleMetCysGlnGluLeuArgGluIleSerSerThrSer : 221 !!.!!||||||||||||:!!:!!||||||.!.:!!|||!!:|||||| !!!.! ! alGlyGlyGlnIleAspLeuLeuCysGlnAsnMetArgAspIleSerArgAsnHis 1387121 : TTGGTGGTCAGATCGATTTATTGTGTCAAAACATGAGAGACATTTCTCGTAATCAT : 1387174 222 : Lys<-><-><->ProTyrSerLeuSerThrLysSerLeuIleThrArgHisGlnLy : 237 :!! ||| ! !.!|||!!!! !|||..!:!!:!!..!|||||||||:: GluLysLysValProGlnLysLeuThrIleLysAspValValValArgHisGlnAr 1387175 : GAGAAGAAAGTACCGCAAAAACTGACAATAAAGGATGTCGTTGTTAGGCATCAACG : 1387231 238 : sIleIleLeuLeuSerAsnAsnValGluAsnPhePheSerPheValGlyLeuLeuG : 256 !||||||! !||||||!!.|||:!!|||!.. !!|||!!!!:!:!!..!|||! | gIleIleArgLeuSerLysAsnIleGluThrValPheThrTyrIleSerLeuCysG 1387232 : AATTATACGACTGTCTAAAAATATCGAGACAGTTTTTACTTATATATCATTATgcc : 1387288 257 : lnPheValTrpAsnThrPheValIleCysCysIleGlyPheMetAlaVal : 272 |||||::: ||| .!.|||||||||! !|||.!!|||:!: !||| lnPheLeuSerAsnMetLeuValIleCysPheIleSerPheValLeuVal 1387289 : aatttttatcgaatatgcTGGTTATCTGTTTCATAAGCTTCGTTTTGGTA : 1387338 vulgar: CbirOr125 2 272 . KQ414716.1 1385628 1387338 + 322 M 51 153 G 1 0 M 30 90 S 0 2 5 0 2 I 0 482 3 0 2 S 1 1 M 20 60 G 0 3 M 36 108 G 0 6 M 58 174 5 0 2 I 0 395 3 0 2 M 23 69 G 0 9 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1385629 1387338 322 + . gene_id 3 ; sequence CbirOr125 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1385629 1385873 . + . KQ414716.1 exonerate:protein2genome:local exon 1385629 1385873 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local splice5 1385874 1385875 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1385874 1386359 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1386358 1386359 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1386360 1386711 . + . KQ414716.1 exonerate:protein2genome:local exon 1386360 1386711 . + . insertions 9 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1386712 1386713 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1386712 1387110 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1387109 1387110 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387111 1387338 . + . KQ414716.1 exonerate:protein2genome:local exon 1387111 1387338 . + . insertions 9 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1385629 1387338 322 + . alignment_id 3 ; Query CbirOr125 ; Align 1385629 3 153 ; Align 1385782 55 90 ; Align 1386361 86 60 ; Align 1386424 106 108 ; Align 1386538 142 174 ; Align 1387111 200 69 ; Align 1387189 223 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr125 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 176 Query range: 313 -> 380 Target range: 1387619 -> 1387955 314 : SerLysSerIleGlyAspAlaAlaTyrGluAlaValTrpTyrAspLeuSerThrSe : 332 |||:!! !!||| !.!.:!:...|||... :::||||||||||||!.! !! ! SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 333 : rGluCysArgValLeuLeuPheLeuIleLeuArgSerGlnLysArgLeuThrIleT : 351 !|||..!|||::::::|||...:::||||||||||||||||||..!|||! !:!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 352 : hrAlaGlyLysValThrAspLeuThrLeuGluAlaPheThrThr >>>> Targe : 366 ||||||||||| !!..!:!!|||:!!|||! ||||||.!!!.. hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt.......... : 1387778 367 : t Intron 1 >>>> ValMetLysAlaSerAlaSerTyrIleSerValLeuHis : 378 135 bp ::::!:||||||||||||||||||:!!|||||||||||| ++MetLeuLysAlaSerAlaSerTyrValSerValLeuHis 1387779 : ...............agatgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTTGCAT : 1387947 379 : AlaMet : 380 |||||| AlaMet 1387948 : GCAATG : 1387955 vulgar: CbirOr125 313 380 . KQ414716.1 1387619 1387955 + 176 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387955 176 + . gene_id 4 ; sequence CbirOr125 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387955 176 + . alignment_id 4 ; Query CbirOr125 ; Align 1387620 314 156 ; Align 1387911 366 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr125 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 199 -> 313 Target range: 1401021 -> 1401431 200 : ValLeuHisIleSerGlyGlnIleAspIleMetCysGlnGluLeuArgGluIleSe : 218 |||||||||:!!.!! !!||||||||||||||||||!:!.!.|||! !!!::!!|| ValLeuHisLeuGlyCysGlnIleAspIleMetCysArgAsnLeuLeuAspValSe 1401022 : GTACTTCATCTAGGATGTCAAATCGACATCATGTGCCGAAATTTGCTAGACGTTTC : 1401076 219 : rSerThrSerLysProTyrSerLeuSerThrLysSerLeuIleThrArgHisGlnL : 237 |! !! !..! ... ... ||| ...|||..!|||||||||: rPheLysAsp---------GlyLysGlnIleLysPhePheIleAsnArgHisGlnG 1401077 : CTTCAAAGAC---------ggaaaacaaataaaattcttcattaACAGACATCAGG : 1401124 238 : ysIleIleLeuLeuSerAsnAsnValGluAsnPhePheSerPheValGlyLeuLeu : 255 !!||||||:!!!!!:!!.!.!..:!!|||!!..!!|||!!!!:!:!!!.!||| ! luIleIleValPheAlaGluArgIleGluLysLeuPheThrTyrMetAlaLeuSer 1401125 : AAATTATTGTTTTTGCAGAAAGAATTGAGAAACTTTTTACATACATGGCTCTCAGT : 1401178 256 : GlnPheValTrpAsnThrPheValIleCysCysIleGlyPheMetAlaValIle : 274 |||.!!|||! ||||||.!.:!!|||||||||:!!||||||:!:!.!|||||| GlnLeuValSerAsnThrIleIleIleCysCysValGlyPheLeuValValIle++ 1401179 : CAACTTGTGTCCAATACGATAATTATATGTTGCGTAGGATTTCTCGTTGTAATTgt : 1401235 275 : >>>> Target Intron 1 >>>> SerLeuAspMetAsnThrGluGlyLysSe : 283 83 bp :!! :!::!!! !!!:..! ! ++Ala------ValHisIleAspAsnGlyVa 1401236 : .........................aggCA------GTACATATCGACAATGGAGT : 1401339 284 : rGlyValIleIleGlnPheIleIleProSerValAlaValThrIleGluAlaPheV : 302 ! !:!!:!!:!!::: :::::: |||!.!:!! !:!!|||||||||: lProLeuLeuLeuLysSerLeuLeuPheTyrValValIleCysLeuGluAlaPheI 1401340 : TCCTCTGTTACTCAaatctcttttattttatgtgGTTATTTGTTTAGAAGCGTTTA : 1401396 303 : alPheCysPheAlaGlyGluTyrLeuSerThrLys : 313 !!!:!||||||!.!|||||||||||||||! !||| leTyrCysPheValGlyGluTyrLeuSerIleLys 1401397 : TATACTGCTTTGTCGGAGAATATCTCAGTATCAAG : 1401431 vulgar: CbirOr125 199 313 . KQ414716.1 1401021 1401431 + 172 M 22 66 G 3 0 M 49 147 5 0 2 I 0 79 3 0 2 M 1 3 G 2 0 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401022 1401431 172 + . gene_id 5 ; sequence CbirOr125 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401022 1401234 . + . KQ414716.1 exonerate:protein2genome:local exon 1401022 1401234 . + . insertions 0 ; deletions 3 KQ414716.1 exonerate:protein2genome:local splice5 1401235 1401236 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401235 1401317 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1401316 1401317 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1401318 1401431 . + . KQ414716.1 exonerate:protein2genome:local exon 1401318 1401431 . + . insertions 0 ; deletions 2 KQ414716.1 exonerate:protein2genome:local similarity 1401022 1401431 172 + . alignment_id 5 ; Query CbirOr125 ; Align 1401022 200 66 ; Align 1401088 225 147 ; Align 1401318 274 3 ; Align 1401321 277 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr125 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 313 -> 366 Target range: 1402435 -> 1402594 314 : SerLysSerIleGlyAspAlaAlaTyrGluAlaValTrpTyrAspLeuSerThrSe : 332 |||:!! !||||||:!!.!!||||||||| !:!!|||||||||||| !!:!!!! SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerTh 1402436 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAAC : 1402490 333 : rGluCysArgValLeuLeuPheLeuIleLeuArgSerGlnLysArgLeuThrIleT : 351 !||| !!!:!:!!|||:!! !:!!|||||||||||||||||| !!!!!|||...| rGluSerGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheT 1402491 : TGAAAGCCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACGTtta : 1402547 352 : hrAlaGlyLysValThrAspLeuThrLeuGluAlaPheThrThrVal : 366 || |||||| :::...|||:!!||||||::!||||||.!!||| hrPheGlyLysPheSerSerLeuSerLeuGluSerPheThrAlaVal 1402548 : cttttggaaaattttcaagtctCTCCTTGGAAAGCTTTACGGCCGTA : 1402594 vulgar: CbirOr125 313 366 . KQ414716.1 1402435 1402594 + 141 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1402436 1402594 141 + . gene_id 6 ; sequence CbirOr125 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1402436 1402594 . + . KQ414716.1 exonerate:protein2genome:local exon 1402436 1402594 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1402436 1402594 141 + . alignment_id 6 ; Query CbirOr125 ; Align 1402436 314 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr125 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 84 -> 200 Target range: 1391662 -> 1392022 85 : ArgIlePheAlaLysIleLeuAlaAlaIleAspLysAspValLysAspCysThrSe : 103 ||||||||| ...:::|||!.!!.!!!:..!!!.||| !!..:!!! !:!!|| ArgIlePheGluAsnMetLeuValGlyMetSerAsnAspTrpSerAsnSerSerSe 1391663 : agaatattcgaaaatatgtTAGTGGGAATGTCTAACGATTGGAGTAATTCTTCATC : 1391717 104 : rGluMetHisGluCys<->IleMetThrSerLysAlaAsnLeuAlaGlnArgCysS : 121 | !! !!!: !|||! !|||||||||.!.|||||| ! |||! !| rThrLysPheAspIleAsnAlaMetIleSerLysAlaGluLeuAlaTyrArgTyrS 1391718 : AACGAAATTTGACATAAACGCCATGATAAGTAAAGCTGAACTTGCGTATCGTTATT : 1391774 122 : erAsnAlaIleIleSerValAsnAlaIleAlaThrValLeuTyr<-><-><->Phe : 136 ||!!.!.!|||!!:|||..! !!|||||||||..! !! !||| ||| erLysValIleMetSerThrTyrAlaIleAlaValPheAlaTyrThrSerValPhe 1391775 : CGAAGGTAATTATGAGCACATATGCTATTGCCGTTTTCGCTTATACCAGCGTGTTT : 1391828 137 : IleAspSerLeuValArgArgArgMetValSerGluAspGlyGlnPheArgGluPh : 155 .!!!!:! !:!! !!.! !!.! ! !..! ! ||| !:!!! !||||||.! PheGluPheMetArgHisAspAsnAspGlyGluTyrAspLeuLysSerArgGluLe 1391829 : TTCGAGTTTATGCGTCACGACAACGACGGCGAATATGATTTAAAGTCTCGAGAACT : 1391885 156 : eProValGlnValLysPheProPheGluAlaHisGluSerProIleTyrGluPheA : 174 ! !:!!:!!:!! ! .!!||||||! ! !:!!:!!!!!|||! |||:!!!::! uLeuMetLysMetAspLeuProPheAlaTyrTyrLysThrProThrTyrGlnTrpV 1391886 : TTTGATGAAAATGGACCTCCCGTTTGCGTATTACAAAACACCGACGTATCAATGGG : 1391942 175 : laValValGlyLeuPhePheHisValLeuGluThrAlaThrValIleAlaMetLeu : 192 .! !!|||! !! !|||.!!!!.:!!||| !!.!|||:!!!.!|||!.!|||||| alPheValValGlnPheLeuGlnLeuLeuIleAsnAlaSerAlaIleGlyMetLeu 1391943 : TATTTGTTGTACAATTTCTTCAGCTGTTGATAAATGCATCTGCTATTGGTATGTTA : 1391996 193 : AsnAlaLeuIleLeuThrLeuVal : 200 :!!|||||||||:!!||||||||| AspAlaLeuIleIleThrLeuVal 1391997 : GATGCTTTGATAATTACGTTGGTA : 1392022 vulgar: CbirOr125 84 200 . KQ414716.1 1391662 1392022 + 115 M 24 72 G 0 3 M 27 81 G 0 9 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1391663 1392022 115 + . gene_id 7 ; sequence CbirOr125 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1391663 1392022 . + . KQ414716.1 exonerate:protein2genome:local exon 1391663 1392022 . + . insertions 12 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1391663 1392022 115 + . alignment_id 7 ; Query CbirOr125 ; Align 1391663 85 72 ; Align 1391738 109 81 ; Align 1391828 136 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr131 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 286 Query range: 225 -> 377 Target range: 1401096 -> 1402808 226 : MetLysThrLeuIleValArgHisGlnArgIleIleSerPheSerLysAsnIleGl : 244 :::||| ...||| !|||||||||..!|||||| !|||:!!:!!!..||||| IleLysPhePheIleAsnArgHisGlnGluIleIleValPheAlaGluArgIleGl 1401097 : ataaaattcttcattaACAGACATCAGGAAATTATTGTTTTTGCAGAAAGAATTGA : 1401151 245 : uThrLeuPheSerAsnIleThrLeuIleGlnPheValSerAspThrLeuLeuIleC : 263 |! !||||||!!! !!!!:.!!|||! !|||.!!||||||:!!|||:!!:!!|||| uLysLeuPheThrTyrMetAlaLeuSerGlnLeuValSerAsnThrIleIleIleC 1401152 : GAAACTTTTTACATACATGGCTCTCAGTCAACTTGTGTCCAATACGATAATTATAT : 1401208 264 : ysCysLeuGlyPheLeuIleValIleSerIleGlyValSerGlyGlySerThrMet : 281 |||||:!!|||||||||:!!|||||| !! ! !:!! ! ! !!:!:!! ysCysValGlyPheLeuValValIleValSerLysLeuLeuTyrIleAsnSerTyr 1401209 : GTTGCGTAGGATTTCTCGTTGTAATTGTAAGTAAGCTTCTCTATATTAACTCTTAT : 1401262 282 : LeuIleLysSerValLeuPhe{Ty} >>>> Target Intron 1 >>>> {r : 289 ! ! !::!!!!|||:!!|||{! } 83 bp {! Pro***ArgCysValIlePhe{Se}++ --{r 1401263 : CCATAACGATGTGTTATTTTT{TC}gt.........................ta{t : 1401371 290 : }LeuValIleLeuMetGluAlaPheIleSerCysPheLeuGlyGluTyrLeuSerT : 308 }:::||||||! !:!:||||||||||||! !||||||:!!|||||||||||||||! }ValValIleCysLeuGluAlaPheIleTyrCysPheValGlyGluTyrLeuSerI 1401372 : }gtgGTTATTTGTTTAGAAGCGTTTATATACTGCTTTGTCGGAGAATATCTCAGTA : 1401426 309 : hrLys >>>> Target Intron 2 >>>> SerLysThrIleGlyAspAlaA : 317 !||| 1004 bp |||:!! !||||||:!!.!!| leLys++ ++SerGlnLeuIleGlyAsnThrA 1401427 : TCAAGgt.........................agAGCCAACTAATCGGCAATACGG : 1402457 318 : laTyrGluSerLeuTrpTyrAsnArgThrProAlaGlnAsnArgAspLeuLeuLeu : 335 ||||||||! !|||||||||:!! ! ! !!.!!:!!!:!!:! !|||:!!! ! laTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSerGlnLeuLeuIlePro 1402458 : CGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAGCCAACTTCTAATACCT : 1402511 336 : MetIleMetArgSerGlnLysHisLeuSerLeuThrValGlyLysValValAspLe : 354 :!:|||:!!|||||||||||| !!!!!!!!..||| |||||| ...|| ValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysPheSerSerLe 1402512 : GTAATATTGAGGTCTCAAAAGGGTTTCACGTttacttttggaaaattttcaagtct : 1402568 355 : uSerLeuGlnGlnPheAlaSer >>>> Target Intron 3 >>>> ValVa : 363 |||||||:!!...|||.!!:!! 169 bp :!!:! uSerLeuGluSerPheThrAla++ ++IleMe 1402569 : CTCCTTGGAAAGCTTTACGGCCgt.........................agATCAT : 1402764 364 : lLysValSerAlaSerTyrValSerValLeuHisAlaMetTyr : 377 !||||||||||||||||||:!!|||||||||! !|||:!!||| tLysValSerAlaSerTyrIleSerValLeuLeuAlaValTyr 1402765 : GAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTGTAT : 1402808 vulgar: CbirOr131 225 377 . KQ414716.1 1401096 1402808 + 286 M 63 189 S 0 2 5 0 2 I 0 79 3 0 2 S 1 1 M 20 60 5 0 2 I 0 1000 3 0 2 M 52 156 5 0 2 I 0 165 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401097 1402808 286 + . gene_id 1 ; sequence CbirOr131 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401097 1401287 . + . KQ414716.1 exonerate:protein2genome:local exon 1401097 1401287 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401288 1401289 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401288 1401370 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1401369 1401370 . + . intron_id 0 ; splice_site "ta" KQ414716.1 exonerate:protein2genome:local cds 1401371 1401431 . + . KQ414716.1 exonerate:protein2genome:local exon 1401371 1401431 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401432 1401433 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401432 1402435 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1402434 1402435 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402436 1402591 . + . KQ414716.1 exonerate:protein2genome:local exon 1402436 1402591 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1402592 1402593 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1402592 1402760 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1402759 1402760 . + . intron_id 2 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402761 1402808 . + . KQ414716.1 exonerate:protein2genome:local exon 1402761 1402808 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401097 1402808 286 + . alignment_id 1 ; Query CbirOr131 ; Align 1401097 226 189 ; Align 1401372 290 60 ; Align 1402436 310 156 ; Align 1402761 362 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr131 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 264 Query range: 1 -> 195 Target range: 1390535 -> 1392022 2 : SerSerValCysValSerValGluTyrGlyLeuArgLeuValGlyIleTrpProGl : 20 !.!|||:!! !! ! !!|||||| !||||||||||||..!|||||||||||||| LysSerIleSerArgProValGluIleGlyLeuArgLeuThrGlyIleTrpProGl 1390536 : AAAAGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGGAATTTGGCCAGG : 1390590 21 : yThrSerTyrAlaIleLeuArgLysPhePheTyrIleSerLeuMetAlaIlePheG : 39 |:!!||||||! !|||:!! !::! ! !!::|||! !||||||.!!:!! ! | ySerSerTyrGluIleIleValArgValThrTrpIleIleLeuMetThrValValG 1390591 : TTCATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTATGACAGTTGTAC : 1390647 40 : lnIleLeuGlnTyrArgTyrLeuPheLeuAsnPhe<->GlyGluAspLeuSerLeu : 56 |||||!!!||||||||||||:!!.!. !:!!.!! |||...:!!|||:!! ! lnIlePheGlnTyrArgTyrIleIleLysHisLeuAspGlySerAsnLeuAlaAsn 1390648 : AAATATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGTAATCTGGCGAAC : 1390701 57 : LeuMetAspValLeuSerAlaAsnLeuAlaTyrSerLeuLeuLeuIleLysLeuIl : 75 |||!!:||| !:!!.!!.!!!.!||| !!||||||||||||! !:::|||||||| LeuIleAspSerValGlyThrThrLeuProTyrSerLeuLeuTyrValLysLeuIl 1390702 : TTAATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTATgtcaaattaat : 1390758 76 : eSerPheSerLeuAsnThr{Ar} >>>> Target Intron 1 >>>> {g}L : 83 | ||| !!!. !{ !} 884 bp {!}: eIlePheTrpThrLysArg{Gl}++ ++{y}I 1390759 : tattttctggaCTAAACGT{GG}gt.........................ag{a}a : 1391666 84 : euPheAspGluThrIleThrCysMetValGluAspTrpLysGluArgAspIleSer : 101 ::|||:::... :!!..! ! ||| !.!.||||||!...!. !... !!!! lePheGluAsnMetLeuValGlyMetSerAsnAspTrpSerAsnSerSerSerThr 1391667 : tattcgaaaatatgtTAGTGGGAATGTCTAACGATTGGAGTAATTCTTCATCAACG : 1391720 102 : <-><->AspLysHisThrMetThrArgMetAlaCysIleSerArgArgTyrSerAs : 118 |||! !:!!.!!|||! !!!!! ||| :!!:!! !|||||||||!! LysPheAspIleAsnAlaMetIleSerLysAlaGluLeuAlaTyrArgTyrSerLy 1391721 : AAATTTGACATAAACGCCATGATAAGTAAAGCTGAACTTGCGTATCGTTATTCGAA : 1391777 119 : nLeuIleIleValLeuTyrAlaMetSerValTrpPheTyrAlaThr<-><->GlyT : 135 .:!!|||!!: ! !||||||!!::!!|||!:: !|||.!!!:! ! sValIleMetSerThrTyrAlaIleAlaValPheAlaTyrThrSerValPhePheG 1391778 : GGTAATTATGAGCACATATGCTATTGCCGTTTTCGCTTATACCAGCGTGTTTTTCG : 1391834 136 : hrLeuLeuLysHisLysSerAspAsnGlnSerAspVal<-><->ArgGluLeuLeu : 151 !!!!:!!:::||| ! !:!|||..!:!!! !|||:!! |||||||||||| luPheMetArgHisAspAsnAspGlyGluTyrAspLeuLysSerArgGluLeuLeu 1391835 : AGTTTATGCGTCACGACAACGACGGCGAATATGATTTAAAGTCTCGAGAACTTTTG : 1391888 152 : LeuLysMetGluLeuProPheAlaIleGluSerSerSerValTyrThrAlaValLe : 170 :!!||||||!!:|||||||||||| ! ! !.!!!! !!..!||| ! !|||!! MetLysMetAspLeuProPheAlaTyrTyrLysThrProThrTyrGlnTrpValPh 1391889 : ATGAAAATGGACCTCCCGTTTGCGTATTACAAAACACCGACGTATCAATGGGTATT : 1391945 171 : uIleThrGlnPheValHisGlnThrSerAlaAlaSerMetValGlyValIleAlaS : 189 !:!!..!||||||:!!!!.! ! !! ! !|||||| :!!|||:!!:!!! !: eValValGlnPheLeuGlnLeuLeuIleAsnAlaSerAlaIleGlyMetLeuAspA 1391946 : TGTTGTACAATTTCTTCAGCTGTTGATAAATGCATCTGCTATTGGTATGTTAGATG : 1392002 190 : erMetLeuIleIleLeuVal : 195 !!:!!:!!|||! |||||| laLeuIleIleThrLeuVal 1392003 : CTTTGATAATTACGTTGGTA : 1392022 vulgar: CbirOr131 1 195 . KQ414716.1 1390535 1392022 + 264 M 49 147 G 0 3 M 31 93 S 0 2 5 0 2 I 0 880 3 0 2 S 1 1 M 19 57 G 0 6 M 32 96 G 0 6 M 14 42 G 0 6 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390536 1392022 264 + . gene_id 2 ; sequence CbirOr131 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1390536 1390780 . + . KQ414716.1 exonerate:protein2genome:local exon 1390536 1390780 . + . insertions 3 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1390781 1390782 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1390781 1391664 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1391663 1391664 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1391665 1392022 . + . KQ414716.1 exonerate:protein2genome:local exon 1391665 1392022 . + . insertions 18 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390536 1392022 264 + . alignment_id 2 ; Query CbirOr131 ; Align 1390536 2 147 ; Align 1390686 51 93 ; Align 1391666 83 57 ; Align 1391729 102 96 ; Align 1391831 134 42 ; Align 1391879 148 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr131 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 186 Query range: 150 -> 270 Target range: 1386978 -> 1387338 151 : LeuLeuLysMetGluLeuProPheAlaIleGluSerSerSerValTyrThrAlaVa : 169 :::||||||::: ||| ::: ... ::: ||| IleLeuLysIleTyrLeuLysTyrIleHisThrGluIleThrPheTyrTyrIleTy 1386979 : atacttaaaatatatttaaaatacattcacactgaaataactttttactatattta : 1387033 170 : lLeuIleThrGlnPheValHisGlnThrSerAlaAlaSerMetValGlyValIleA : 188 ...||| ::: ! ! !! !.!!!! ...::: :::||| rPheIleIleArgHisGlnAspPheAsnThrTyrLeuIlePheLeuLeuIleIle* 1387034 : ttttataattaggCATCAAGATTTTAACACTTatctaatatttttgttaatcaTTT : 1387090 189 : laSerMetLeuIleIleLeuValLeuHisAlaCysGlyGlnIleAspIleValArg : 206 !!.! ! !:!::!:! !:!!||||||!.! !!||||||||||||:!!:!! !! **LysAlaSerLeuLeu***IleLeuHisValGlyGlyGlnIleAspLeuLeuCys 1387091 : GAAAAGCTTCACTGTTGTAGATATTACATGTTGGTGGTCAGATCGATTTATTGTGT : 1387144 207 : GlnLysLeuSerGluIleThrArgAsnAspIleLysProSerGluAlaGluSerIl : 225 |||!!.:!!!!!!!:|||:!!|||||| !! ||| ! ! ! !:!! !! GlnAsnMetArgAspIleSerArgAsnHisGluLysLysValProGlnLysLeuTh 1387145 : CAAAACATGAGAGACATTTCTCGTAATCATGAGAAGAAAGTACCGCAAAAACTGAC : 1387201 226 : eMetLysThrLeuIleValArgHisGlnArgIleIleSerPheSerLysAsnIleG : 244 !!!:||| !:!!:!!||||||||||||||||||||| !!.!.||||||||||||| rIleLysAspValValValArgHisGlnArgIleIleArgLeuSerLysAsnIleG 1387202 : AATAAAGGATGTCGTTGTTAGGCATCAACGAATTATACGACTGTCTAAAAATATCG : 1387258 245 : luThrLeuPheSerAsnIleThrLeuIleGlnPheValSerAspThrLeuLeuIle : 262 |||||:!!|||!!! !!|||:!!||| ||||||:::|||::: |||:!!||| luThrValPheThrTyrIleSerLeuCysGlnPheLeuSerAsnMetLeuValIle 1387259 : AGACAGTTTTTACTTATATATCATTATgccaatttttatcgaatatgcTGGTTATC : 1387312 263 : CysCysLeuGlyPheLeuIleVal : 270 |||! !:!!.!!|||:!!:!:||| CysPheIleSerPheValLeuVal 1387313 : TGTTTCATAAGCTTCGTTTTGGTA : 1387338 vulgar: CbirOr131 150 270 . KQ414716.1 1386978 1387338 + 186 M 120 360 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1386979 1387338 186 + . gene_id 3 ; sequence CbirOr131 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1386979 1387338 . + . KQ414716.1 exonerate:protein2genome:local exon 1386979 1387338 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1386979 1387338 186 + . alignment_id 3 ; Query CbirOr131 ; Align 1386979 151 360 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr131 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 192 -> 271 Target range: 1394155 -> 1394392 193 : IleLeuValLeuHisAlaCysGlyGlnIleAspIleValArgGlnLysLeuSerGl : 211 |||! !:!!!!!||| ! ! |||||||||!!:!!::!!!:!:!! |||:::.. Ile***IlePheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAs 1394156 : ATTTAGATATTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaa : 1394210 212 : uIleThrArgAsnAspIleLysProSerGluAlaGluSerIleMetLysThrLeuI : 230 .|||::: ...||| |||! !!!! !:!!..!!:!! !! |||:!!|||| nIleSerIleLysAspGluLysHisArgLeuSerArgAsnThrThrLysSerLeuI 1394211 : tatttctattaaagATGAGAAACACAGATTATCGAGAAACACCACCAAATCATTAA : 1394267 231 : leValArgHisGlnArgIleIleSerPheSerLysAsnIleGluThrLeuPheSer : 248 || !||||||!!.|||||||||! ! !||| ! ::!||||||!:!||||||||| leHisArgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSer 1394268 : TTCACAGACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCA : 1394321 249 : AsnIleThrLeuIleGlnPheValSerAspThrLeuLeuIleCysCysLeuGlyPh : 267 !!|||.!!|||!!:|||!:::!!!!!:!!||||||:!!|||||||||:!!||||| TyrIleAlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGlyPh 1394322 : TACATTGCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGATT : 1394378 268 : eLeuIleValIle : 271 ||||||||||||| eLeuIleValIle 1394379 : CTTAATAGTAATT : 1394392 vulgar: CbirOr131 192 271 . KQ414716.1 1394155 1394392 + 172 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394156 1394392 172 + . gene_id 4 ; sequence CbirOr131 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1394156 1394392 . + . KQ414716.1 exonerate:protein2genome:local exon 1394156 1394392 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394156 1394392 172 + . alignment_id 4 ; Query CbirOr131 ; Align 1394156 193 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr131 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 309 -> 376 Target range: 1387619 -> 1387955 310 : SerLysThrIleGlyAspAlaAlaTyrGluSerLeuTrpTyrAsnArgThrProAl : 328 |||:!! !||| !.!.:!:...|||... |||||||||:!!! !! !||| SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 329 : aGlnAsnArgAspLeuLeuLeuMetIleMetArgSerGlnLysHisLeuSerLeuT : 347 !:!! !||| :::||||||:::|||:::||||||||||||.!.|||! !|||| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 348 : hrValGlyLysValValAspLeuSerLeuGlnGlnPheAlaSer >>>> Targe : 362 ||!.!|||||| !!|||:!!||||||||| !||||||!:: hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt.......... : 1387778 363 : t Intron 1 >>>> ValValLysValSerAlaSerTyrValSerValLeuHis : 374 135 bp ::::!!|||!.!||||||||||||||||||||||||||| ++MetLeuLysAlaSerAlaSerTyrValSerValLeuHis 1387779 : ...............agatgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTTGCAT : 1387947 375 : AlaMet : 376 |||||| AlaMet 1387948 : GCAATG : 1387955 vulgar: CbirOr131 309 376 . KQ414716.1 1387619 1387955 + 165 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387955 165 + . gene_id 5 ; sequence CbirOr131 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387955 165 + . alignment_id 5 ; Query CbirOr131 ; Align 1387620 310 156 ; Align 1387911 362 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr131 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 82 -> 199 Target range: 1405761 -> 1406112 83 : LeuPheAspGluThrIleThrCysMetValGluAspTrpLysGluArgAspIleSe : 101 |||.!! !!!!:! !|||:!! !|||! !||||||!! |||:!! !! !:!! LeuLeuTyrAspIleIleSerThrMetGluGluAspCysLysLysTyrAlaValLe 1405762 : CTACTTTACGACATTATCTCGACCATGGAAGAAGACTGTAAAAAGTACGCTGTTCt : 1405816 102 : rAsp<->LysHisThrMetThrArgMetAlaCysIleSerArgArgTyrSerAsnL : 119 ||| |||::: ::::::::: ||| !:!!||| !|||! !!!|||: uAspThrLysAsnLeuIleSerLysThrAlaHisLeuSerPheArgLeuThrAsnI 1405817 : tgatacaaaaaatttaatatcaaaaaCAGCACATCTATCTTTTCGATTAACCAATA : 1405873 120 : euIleIleValLeuTyrAlaMetSerValTrpPheTyrAlaThrGlyThrLeuLeu : 137 !!:!:||| !:!!! !!.! |||..! ! !||||||! !|||..!||| ! leValIleCysIleCysValSerSerThrAlaCysTyrAlaIleGlyValLeuAla 1405874 : TAGTGATATGTATCTGTGTATCATCCACGGCATGTTATGCAATTGGAGTTTTGGCG : 1405927 138 : LysHisLysSerAspAsnGlnSerAspValArgGluLeuLeuLeuLysMetGluLe : 156 !!!.!:!!!! ||| !!!!! !||||||||||||:!!||||||!!:|| ProGlnArgThr---AsnIleThrAlaProArgGluLeuLeuIleLysMetAspLe 1405928 : CCACAAAGGACT---AATATAACAGCACCTCGAGAACTTTTGATAAAAATGGACTT : 1405981 157 : uProPheAlaIleGluSerSerSerValTyrThrAlaValLeuIleThrGlnPheV : 175 ||||||| !! .!.!:!||| !!:!!||| ! !|||:!!:!! !|||!:!: uProPheAsnThrAsnAsnSerProIleTyrGluLeuValIleValLeuGlnTyrL 1405982 : GCCATTTAATACGAACAATTCGCCTATTTACGAGCTGGTAATAGTTTTACAATACC : 1406038 176 : alHisGlnThrSerAlaAlaSerMetValGlyValIleAlaSerMetLeuIleIle : 193 !! !:!!..!|||.!!|||! !! ! !!||||||.!!::!|||:!!|||:!:!!: euCysLysValSerThrAlaPheThrPheGlyValPheSerSerLeuLeuLeuMet 1406039 : TATGCAAAGTATCGACAGCTTTTACGTTTGGTGTATTCAGCAGTCTGCTTTTGATG : 1406092 194 : LeuValLeuHisAlaCys : 199 :!!||| ! ! !||| MetValSerThrAsnCys 1406093 : ATGGTAAGTACCAACTGT : 1406112 vulgar: CbirOr131 82 199 . KQ414716.1 1405761 1406112 + 151 M 20 60 G 0 3 M 39 117 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1405762 1406112 151 + . gene_id 6 ; sequence CbirOr131 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1405762 1406112 . + . KQ414716.1 exonerate:protein2genome:local exon 1405762 1406112 . + . insertions 3 ; deletions 1 KQ414716.1 exonerate:protein2genome:local similarity 1405762 1406112 151 + . alignment_id 6 ; Query CbirOr131 ; Align 1405762 83 60 ; Align 1405825 103 117 ; Align 1405942 143 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr131 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 305 -> 362 Target range: 1409037 -> 1409208 306 : LeuSerThrLysSerLysThrIleGlyAspAlaAlaTyrGluSerLeuTrpTyrAs : 324 :!!..! !:::|||||| |||||||||.!!|||||||||! !||||||||||| IleAspPheGlnSerLysLeuIleGlyAspThrAlaTyrGluPheLeuTrpTyrAs 1409038 : ATTGATTTTcagagtaaactgattggagACACGGCGTATGAATTTCTTTGGTATAA : 1409092 325 : nArgThrProAlaGlnAsnArgAspLeuLeuLeuMetIleMetArgSerGlnLysH : 343 |! ! ! !! !:!!!:!||| !:!!||||||:!:|||:!:|||||||||||| nMetHisSerLysGluSerArgLeuMetLeuLeuValIleLeuArgSerGlnLysG 1409093 : TATGCATTCGAAGGAAAGCCGACTTATGTTGCTTGTAATACTACGATCACAGAAAG : 1409149 344 : isLeuSerLeuThrValGlyLysValValAspLeuSerLeuGlnGlnPheAlaSer : 361 !!!!!:...||| |||||| ......||||||:!!:!!...||||||.!! lyPheThrPheThrPheGlyLysPheAlaSerLeuSerMetGluSerPheAlaGly 1409150 : GATTTACtttcacttttggaaaatttgcaagtCTTTCCATGGAAAGTTTTGCAGGC : 1409203 362 : Val : 362 ||| Val 1409204 : GTA : 1409208 vulgar: CbirOr131 305 362 . KQ414716.1 1409037 1409208 + 141 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1409038 1409208 141 + . gene_id 7 ; sequence CbirOr131 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1409038 1409208 . + . KQ414716.1 exonerate:protein2genome:local exon 1409038 1409208 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1409038 1409208 141 + . alignment_id 7 ; Query CbirOr131 ; Align 1409038 306 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr131 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 82 -> 195 Target range: 1398619 -> 1398958 83 : LeuPheAspGluThrIleThrCysMetValGluAsp<->TrpLysGluArgAspIl : 100 :!!|||..!!!:! !:!!:!! !|||! !|||||| !||| ! !! !|| ValPheSerAspIleLeuSerThrMetGluGluAspCysGlnLysTyrAlaAlaIl 1398620 : GTATTTAGTGACATTTTATCAACCATGGAAGAGGATTGTCAGAAATATGCTGCTAT : 1398674 101 : eSerAspLysHisThrMetThrArgMetAlaCysIleSerArgArgTyrSerAsnL : 119 |..! !!. ! !|||:!!!:!! !.! :::||| ::::::: eAspIleAsnLysLeuMetSerLysThrGlyGlnLeuSerPheTyrLeuThrSerI 1398675 : AGATATAAATAAGTTGATGTCAAAAACCGGACAgctatctttttatttaacaagcA : 1398731 120 : euIleIleValLeuTyrAlaMetSerValTrpPheTyrAlaThrGlyThrLeuLeu : 137 !!:!!!!: !|||||| ! |||!.! |||||| !|||..!||| :!! leValMetSerLeuTyrMetAlaSerAlaAlaPheTyrIleThrAsnThr---Ile 1398732 : TTGTTATGTCTTTGTATATGGCATCTGCAGCATTTTACATAACTAATACT---ATT : 1398782 138 : LysHisLysSerAspAsnGlnSerAspValArgGluLeuLeuLeuLysMetGluLe : 156 ! !:!!.!!:!!||| |||! !||||||||||||:!!||||||!!:|| GlyPheGlnGlyAsnAsnAlaSerValSerArgGluLeuLeuMetLysMetAspLe 1398783 : GGATTTCAAGGAAATAATGCTTCAGTATCTCGGGAGCTCCTTATGAAAATGGATTT : 1398839 157 : uProPheAlaIleGluSerSerSerValTyrThrAlaValLeuIleThrGlnPheV : 175 |||||||! !! !.....!||| !! !||| ! !|||:!!! !|||||| !!: uProPheGluThrSerGluSerProAsnTyrGluLeuValValThrThrGlnValL 1398840 : GCCTTTCGAGACCAGCGAATCGCCGAATTACGAACTTGTAGTAACTACACAGGTCC : 1398896 176 : alHisGlnThrSerAlaAlaSerMetValGlyValIleAlaSerMetLeuIleIle : 193 !! !!!. !|||!.!||| ! !|||!.!.!! !:!!:!:|||:!!!!: euIleHisLeuSerValAlaValAlaTyrGlyAlaPheAsnAlaLeuLeuLeuMet 1398897 : TTATTCACTTATCAGTGGCCGTAGCATACGGTGCATTCAATGCTCTTCTCTTAATG : 1398950 194 : LeuVal : 195 :!!||| ValVal 1398951 : GTGGTA : 1398958 vulgar: CbirOr131 82 195 . KQ414716.1 1398619 1398958 + 117 M 12 36 G 0 3 M 41 123 G 1 0 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1398620 1398958 117 + . gene_id 8 ; sequence CbirOr131 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1398620 1398958 . + . KQ414716.1 exonerate:protein2genome:local exon 1398620 1398958 . + . insertions 3 ; deletions 1 KQ414716.1 exonerate:protein2genome:local similarity 1398620 1398958 117 + . alignment_id 8 ; Query CbirOr131 ; Align 1398620 83 36 ; Align 1398659 95 123 ; Align 1398782 137 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr131 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 218 -> 269 Target range: 1408270 -> 1408423 219 : ProSerGluAlaGluSerIleMetLysThrLeuIleValArgHisGlnArgIleIl : 237 |||! !:!! !:!!!!! !:!!!:! !!!!||| !|||||||||!:!||||| ProTyrLysAsnLysThrGlnLeuArgPhePheIleSerArgHisGlnGlnIleIl 1408271 : CCTTATAAGAATAAAACTCAACTGAGATTCTTCATCAGCAGACATCAACAGATCAT : 1408325 238 : eSerPheSerLysAsnIleGluThrLeuPheSerAsnIleThrLeuIleGlnPheV : 256 |! !|||:!!:!!!..||||||! !||||||!!! !!:!!.!!|||! !|||.!!: eIlePheAlaGluArgIleGluLysLeuPheThrTyrLeuAlaLeuSerGlnLeuL 1408326 : CATATTTGCAGAGAGAATAGAAAAACTGTTTACGTATCTAGCACTTAGTCAACTTC : 1408382 257 : alSerAspThrLeuLeuIleCysCysLeuGlyPheLeuIle : 269 !!|||:!!||||||:!!! !||||||:!!|||!:!:!!||| euSerAsnThrLeuIleThrCysCysValGlyTyrIleIle 1408383 : TCTCGAATACCCTAATTACTTGCTGCGTGGGTTATATTATC : 1408423 vulgar: CbirOr131 218 269 . KQ414716.1 1408270 1408423 + 116 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408271 1408423 116 + . gene_id 9 ; sequence CbirOr131 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1408271 1408423 . + . KQ414716.1 exonerate:protein2genome:local exon 1408271 1408423 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408271 1408423 116 + . alignment_id 9 ; Query CbirOr131 ; Align 1408271 219 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr136 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 240 Query range: 202 -> 317 Target range: 1394161 -> 1394970 203 : IleLeuHisValSerGlyGlnIleAspIleLeuArgGluTrpValMetLysIlePh : 221 |||!!!|||:!!.!!|||||||||!!:!!:|||!:!:!! ::: ...||| IlePheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAsnIleSe 1394162 : ATATTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaatatttc : 1394216 222 : eSerLysGluLysGlyArgGlyAlaSerLeuPheMetIleLysLysAlaIleArgL : 240 |||:!::!! !!.! !! !||| ! !! ! !|||..! !|||!.!! rIleLysAspGluLysHisArgLeuSerArgAsnThrThrLysSerLeuIleHisA 1394217 : tattaaagATGAGAAACACAGATTATCGAGAAACACCACCAAATCATTAATTCACA : 1394273 241 : ysHisGlnLysIleIleThrPheSerGluHisIleGluAspLeuTyrSerAsnIle : 258 :!|||!!.::!||||||! ! !|||!!: !||||||..!|||!:!||| !!||| rgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIle 1394274 : GACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACATT : 1394327 259 : AlaMetAlaLeuPheValSerAspThrLeuIleIleCysCysLeuGlyPheIleMe : 277 |||:!! !! !!:::!!!!!:!!||||||:!!|||||||||:!!||||||:!!!! AlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGlyPheLeuIl 1394328 : GCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGATTCTTAAT : 1394384 278 : tValThr >>>> Target Intron 1 >>>> SerIleGlyThrSerAspAl : 286 :|||! ! 464 bp :!!.!!..!|||... eValIle++ ++AlaPheAsnThrAspGlyAs 1394385 : AGTAATTgt.........................agGCATTTAATACAGatggaaa : 1394875 287 : aAlaArgIleIleIleArgThrValLeuPheTyrPheValIleAsnMetGluAlaP : 305 ::: ...|||:::|||::!|||||||||.!!!.!|||!.!|||||||||| nIleLysThrPheIleLysThrLeuLeuPheTyrIleAlaIleThrMetGluAlaP 1394876 : tataaaaacatttataaaaacattACTCTTTTACATCGCTATCACTATGGAAGCAT : 1394932 306 : heIlePheCysPheAlaGlyGluTyrLeuSerAlaLys : 317 ||||||||! !||||||||||||||||||||| !||| heIlePheSerPheAlaGlyGluTyrLeuSerAsnLys 1394933 : TCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAA : 1394970 vulgar: CbirOr136 202 317 . KQ414716.1 1394161 1394970 + 240 M 77 231 5 0 2 I 0 460 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394162 1394970 240 + . gene_id 1 ; sequence CbirOr136 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394162 1394392 . + . KQ414716.1 exonerate:protein2genome:local exon 1394162 1394392 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394393 1394394 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394393 1394856 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394855 1394856 . + . intron_id 0 ; splice_site "aG" KQ414716.1 exonerate:protein2genome:local cds 1394857 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394857 1394970 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394162 1394970 240 + . alignment_id 1 ; Query CbirOr136 ; Align 1394162 203 231 ; Align 1394857 280 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr136 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 229 Query range: 275 -> 384 Target range: 1408509 -> 1409528 276 : IleMetValThrSerIleGlyThrSerAspAlaAlaArgIleIleIleArgThrVa : 294 :!!! !:!! !:!!:!! !!.!!:!:!!!.! !!:!!!::!:|||!:! !|| LeuThrLeuGlnAlaLeuGlnAsnAsnAsnGlyPheLysMetLeuIleLysPheVa 1408510 : TTAACGTTACAGGCACTACAAAATAATAATGGATTTAAAATGTTGATCAAATTTGT : 1408564 295 : lLeuPheTyrPheValIleAsnMetGluAlaPheIlePheCysPheAlaGlyGluT : 313 |:!!!:!|||.!.!.!:!: ! ||||||||||||!:!|||||||||||||||| lValTyrTyrMetAlaValCysSerGluAlaPheIleTyrCysPheAlaGlyGluT 1408565 : TGTATATTACATGGCTGTGTGCTCAGAAGCGTTCATATACTGCTTTGCTGGAGAGT : 1408621 314 : yrLeuSerAlaLys >>>> Target Intron 1 >>>> SerGlnSerIleG : 322 |||||!:! !||| 414 bp |||::: |||| yrLeuAsnIleLys++ ++SerLysLeuIleG 1408622 : ACCTTAATATCAAGgt.........................agagtaaactgattg : 1409062 323 : lyAspAlaAlaTyrAspThrCysTrpTyrAspSerTyrSerThrAlaAsnArgIle : 340 |||||.!!||||||!!: ! !||||||:!!! !:!!|||! !! !!:!|||:!! lyAspThrAlaTyrGluPheLeuTrpTyrAsnMetHisSerLysGluSerArgLeu 1409063 : gagACACGGCGTATGAATTTCTTTGGTATAATATGCATTCGAAGGAAAGCCGACTT : 1409116 341 : IleProPheLeuIleMetArgSerGlnAsnGlnLeuThrIleThrIleGlyLysVa : 359 !!: !.!!:!!|||:!:|||||||||!!. !!!!|||...|||...|||||| MetLeuLeuValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysPh 1409117 : ATGTTGCTTGTAATACTACGATCACAGAAAGGATTTACtttcacttttggaaaatt : 1409173 360 : lThrAsnLeuSerLeuGluArgPheThrAsn >>>> Target Intron 2 >> : 370 ...:::||||||:!!|||!!!|||.!!..! 278 bp eAlaSerLeuSerMetGluSerPheAlaGly++ 1409174 : tgcaagtCTTTCCATGGAAAGTTTTGCAGGCgt....................... : 1409208 371 : >> IleIleArgValSerAlaSerTyrValSerValLeuLeuAlaMet : 384 |||!!:!:!!.!||||||||||||:!!|||||||||||||||||| ++IleMetLysAlaSerAlaSerTyrIleSerValLeuLeuAlaMet 1409209 : ..agattATGAAAGCTTCTGCATCGTATATATCCGTATTGCTCGCAATG : 1409528 vulgar: CbirOr136 275 384 . KQ414716.1 1408509 1409528 + 229 M 42 126 5 0 2 I 0 410 3 0 2 M 52 156 5 0 2 I 0 274 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408510 1409528 229 + . gene_id 2 ; sequence CbirOr136 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408510 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408510 1408635 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408636 1408637 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408636 1409049 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1409048 1409049 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409050 1409205 . + . KQ414716.1 exonerate:protein2genome:local exon 1409050 1409205 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1409206 1409207 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1409206 1409483 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1409482 1409483 . + . intron_id 1 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409484 1409528 . + . KQ414716.1 exonerate:protein2genome:local exon 1409484 1409528 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408510 1409528 229 + . alignment_id 2 ; Query CbirOr136 ; Align 1408510 276 126 ; Align 1409050 318 156 ; Align 1409484 370 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr136 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 232 -> 317 Target range: 1401093 -> 1401431 233 : MetIleLysLysAlaIleArgLysHisGlnLysIleIleThrPheSerGluHisIl : 251 ...|||||| |||..!!:!||||||:!!||||||..!|||:!!|||...|| GlnIleLysPhePheIleAsnArgHisGlnGluIleIleValPheAlaGluArgIl 1401094 : caaataaaattcttcattaACAGACATCAGGAAATTATTGTTTTTGCAGAAAGAAT : 1401148 252 : eGluAspLeuTyrSerAsnIleAlaMetAlaLeuPheValSerAspThrLeuIleI : 270 |||| ! |||!:!!!! !!!!:|||:!:::!! !.!!||||||:!!|||:!!|||| eGluLysLeuPheThrTyrMetAlaLeuSerGlnLeuValSerAsnThrIleIleI 1401149 : TGAGAAACTTTTTACATACATGGCTCTCAGTCAACTTGTGTCCAATACGATAATTA : 1401205 271 : leCysCysLeuGlyPheIleMetValThr >>>> Target Intron 1 >>>> : 280 ||||||||:!!||||||:!!:!:|||! ! 83 bp leCysCysValGlyPheLeuValValIle++ 1401206 : TATGTTGCGTAGGATTTCTCGTTGTAATTgt......................... : 1401237 281 : SerIleGlyThrSerAspAlaAlaArgIleIleIleArgThrValLeuPheTyr : 297 :!!:!! !! !..!:!!!.!!.!! !:!::!!:!!!::::::::||||||||| ++AlaValHisIleAspAsnGlyValProLeuLeuLeuLysSerLeuLeuPheTyr 1401238 : aggCAGTACATATCGACAATGGAGTTCCTCTGTTACTCAaatctcttttattttat : 1401369 298 : PheValIleAsnMetGluAlaPheIlePheCysPheAlaGlyGluTyrLeuSerAl : 316 |||||| !:!:||||||||||||!:!||||||!.!||||||||||||||| ValValIleCysLeuGluAlaPheIleTyrCysPheValGlyGluTyrLeuSerIl 1401370 : gtgGTTATTTGTTTAGAAGCGTTTATATACTGCTTTGTCGGAGAATATCTCAGTAT : 1401426 317 : aLys : 317 !||| eLys 1401427 : CAAG : 1401431 vulgar: CbirOr136 232 317 . KQ414716.1 1401093 1401431 + 205 M 47 141 5 0 2 I 0 79 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401094 1401431 205 + . gene_id 3 ; sequence CbirOr136 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401094 1401234 . + . KQ414716.1 exonerate:protein2genome:local exon 1401094 1401234 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401235 1401236 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401235 1401317 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1401316 1401317 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1401318 1401431 . + . KQ414716.1 exonerate:protein2genome:local exon 1401318 1401431 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401094 1401431 205 + . alignment_id 3 ; Query CbirOr136 ; Align 1401094 233 141 ; Align 1401318 280 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr136 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 0 -> 85 Target range: 1390523 -> 1390778 1 : MetLysLeuGluAsnThrIleSerGlnValThrArgValTrpLeuGluIlePheGl : 19 |||..!! !.!.!!.!:!||||||!:: !..!..!:!! ! |||..!:!! !|| MetSerHisAsnLysSerIleSerArgProValGluIleGlyLeuArgLeuThrGl 1390524 : ATGTCGCATAACAAAAGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGG : 1390578 20 : yMetTrpProAsnSerSerCysIlePheLeuArgArgIlePheTrpValValAlaL : 38 |!!:||||||..!||||||! ! !.!!:!! !|||:!! !|||:!!:!! !: yIleTrpProGlySerSerTyrGluIleIleValArgValThrTrpIleIleLeuM 1390579 : AATTTGGCCAGGTTCATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTA : 1390635 39 : euIlePheGluGlnValGlyGlnTyrGlnTyrIleIleMetHisLeuTyrSerThr : 56 !!! ! !!! !|||:!! !||||||!:!|||||||||! !|||||| !!.!!!:! etThrValValGlnIlePheGlnTyrArgTyrIleIleLysHisLeuAspGlySer 1390636 : TGACAGTTGTACAAATATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGT : 1390689 57 : GluIleSerGluLeuMetAsnHisLeuSerAlaAlaMetSerPheThrLeuPheCy : 75 .!.:!::!!.!.|||!!::!! !:!!.!!.!!.!!:!: !!!:!!:!|||!!.! AsnLeuAlaAsnLeuIleAspSerValGlyThrThrLeuProTyrSerLeuLeuTy 1390690 : AATCTGGCGAACTTAATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTA : 1390746 76 : sIleLysLeuValValPheTrpTyrLysGln : 85 !:::||||||::::::|||||| !|||!:: rValLysLeuIleIlePheTrpThrLysArg 1390747 : TgtcaaattaattattttctggaCTAAACGT : 1390778 vulgar: CbirOr136 0 85 . KQ414716.1 1390523 1390778 + 159 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390524 1390778 159 + . gene_id 4 ; sequence CbirOr136 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1390524 1390778 . + . KQ414716.1 exonerate:protein2genome:local exon 1390524 1390778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390524 1390778 159 + . alignment_id 4 ; Query CbirOr136 ; Align 1390524 1 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr136 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 4 -> 82 Target range: 1405086 -> 1405320 5 : AsnThrIleSerGlnValThrArgValTrpLeuGluIlePheGlyMetTrpProAs : 23 |||||||||||||||..!..!!:! ! ! |||... ! !!.! ||||||.. AsnThrIleSerGlnThrValLysHisGlyLeuArgTyrAlaAlaSerTrpProGl 1405087 : AATACGATAAGTCAAACTGTAAAACATGGCCTCCGTTATGCTGCCTCTTGGCCAGG : 1405141 24 : nSerSerCysIlePheLeuArgArgIlePheTrpValValAlaLeuIlePheGluG : 42 .!!! !!! :::...|||...:::...||||||..!:!!!.!:!! ! | yThrProSerLeuIleLeuHisLysPhePheTrpThrIleValMetCysGlyLeuG 1405142 : AACACCATCGTtgattttacataaatttttttggaCAATTGTCATGTGTGGACTTC : 1405198 43 : lnValGlyGlnTyrGlnTyrIleIleMetHisLeuTyrSerThrGluIleSerGlu : 60 ||:!! !|||||| |||:!:|||! !|||! ! ! ! !!.! :!! !!!: lnIleTyrGlnTyrGlyTyrValIleArgHisTyrLysTyrAsnThrLeuValAsp 1405199 : AAATTTATCAGTACGGCTACGTGATCAGGCATTATAAATATAACACTCTTGTGGAT : 1405252 61 : LeuMetAsnHisLeuSerAlaAlaMetSerPheThrLeuPheCysIleLysLeuVa : 79 !:!::!!:!!|||||| !..!||| !!||||||||| ! |||||||||||| ! ThrValAspAsnLeuSerIleCysMetProPheThrLeuValCysIleLysLeuPh 1405253 : ACAGTAGATAATTTGAGCATTTGCATGCCATTCACTTTAGTGTGCATCAAATTATT : 1405309 80 : lValPheTrp : 82 !||| !||| eValAlaTrp 1405310 : TGTTGCTTGG : 1405320 vulgar: CbirOr136 4 82 . KQ414716.1 1405086 1405320 + 154 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1405087 1405320 154 + . gene_id 5 ; sequence CbirOr136 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1405087 1405320 . + . KQ414716.1 exonerate:protein2genome:local exon 1405087 1405320 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1405087 1405320 154 + . alignment_id 5 ; Query CbirOr136 ; Align 1405087 5 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr136 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 202 -> 279 Target range: 1387110 -> 1387341 203 : IleLeuHisValSerGlyGlnIleAspIleLeuArgGluTrpValMetLysIlePh : 221 ||||||||||||.!!||||||||||||:!!||| !!:!! :!!! ! |||! IleLeuHisValGlyGlyGlnIleAspLeuLeuCysGlnAsnMetArgAspIleSe 1387111 : ATATTACATGTTGGTGGTCAGATCGATTTATTGTGTCAAAACATGAGAGACATTTC : 1387165 222 : eSerLysGluLysGlyArgGlyAlaSerLeuPheMetIleLysLysAlaIleArgL : 240 ! !!!!..!.:!! !!:!! ! !!..! !.!.! |||||| ! !.!:!! !! rArgAsnHisGluLysLysValProGlnLysLeuThrIleLysAspValValValA 1387166 : TCGTAATCATGAGAAGAAAGTACCGCAAAAACTGACAATAAAGGATGTCGTTGTTA : 1387222 241 : ysHisGlnLysIleIleThrPheSerGluHisIleGluAspLeuTyrSerAsnIle : 258 :!||||||::!|||||| !.!.|||:!!:!!|||||| :!!!:!!!! !!||| rgHisGlnArgIleIleArgLeuSerLysAsnIleGluThrValPheThrTyrIle 1387223 : GGCATCAACGAATTATACGACTGTCTAAAAATATCGAGACAGTTTTTACTTATATA : 1387276 259 : AlaMetAlaLeuPheValSerAspThrLeuIleIleCysCysLeuGlyPheIleMe : 277 :!!:!:... |||:::|||::: |||:!!||||||! !:!!.!!|||:!!:! SerLeuCysGlnPheLeuSerAsnMetLeuValIleCysPheIleSerPheValLe 1387277 : TCATTATgccaatttttatcgaatatgcTGGTTATCTGTTTCATAAGCTTCGTTTT : 1387333 278 : tValThr : 279 !|||||| uValThr 1387334 : GGTAACC : 1387341 vulgar: CbirOr136 202 279 . KQ414716.1 1387110 1387341 + 141 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387111 1387341 141 + . gene_id 6 ; sequence CbirOr136 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387111 1387341 . + . KQ414716.1 exonerate:protein2genome:local exon 1387111 1387341 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387111 1387341 141 + . alignment_id 6 ; Query CbirOr136 ; Align 1387111 203 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr135 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 239 Query range: 201 -> 316 Target range: 1394161 -> 1394970 202 : IleLeuHisAlaSerGlyGlnIleGluIleLeuArgGluTrpLeuMetLysIlePh : 220 |||!!!||| !.!!||||||||||||!!:|||!:!:!! ||| ...||| IlePheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAsnIleSe 1394162 : ATATTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaatatttc : 1394216 221 : eProLysGluLysGluArgAspAlaAsnLeuPheMetValLysLysAlaIleArgL : 239 |||:!::!!:!!!.! !::: ! !! ..!|||..! !|||!.!! rIleLysAspGluLysHisArgLeuSerArgAsnThrThrLysSerLeuIleHisA 1394217 : tattaaagATGAGAAACACAGATTATCGAGAAACACCACCAAATCATTAATTCACA : 1394273 240 : ysHisGlnLysIleIleIlePheSerGluHisIleGluGluLeuTyrSerAsnIle : 257 :!|||!!.::!||||||||| !|||!!: !||||||...|||!:!||| !!||| rgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIle 1394274 : GACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACATT : 1394327 258 : AlaMetAlaLeuPheValSerAspThrLeuValIleCysPheLeuGlyPheIleIl : 276 |||:!! !! !!:::!!!!!:!!|||||||||||||||! !:!!||||||:!!|| AlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGlyPheLeuIl 1394328 : GCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGATTCTTAAT : 1394384 277 : eValThr >>>> Target Intron 1 >>>> SerIleGlyThrProAspAl : 285 ||||! ! 464 bp :!!.!!..!||| eValIle++ ++AlaPheAsnThrAspGlyAs 1394385 : AGTAATTgt.........................agGCATTTAATACAGatggaaa : 1394875 286 : aThrArgIleIleIleArgThrValValPheTyrPheValIleAsnMetGluAlaP : 304 ::: ...|||:::|||::!:!!||||||.!!!.!|||!.!|||||||||| nIleLysThrPheIleLysThrLeuLeuPheTyrIleAlaIleThrMetGluAlaP 1394876 : tataaaaacatttataaaaacattACTCTTTTACATCGCTATCACTATGGAAGCAT : 1394932 305 : heIlePheCysPheAlaGlyGluTyrLeuSerSerLys : 316 ||||||||! !|||||||||||||||||||||!:!||| heIlePheSerPheAlaGlyGluTyrLeuSerAsnLys 1394933 : TCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAA : 1394970 vulgar: CbirOr135 201 316 . KQ414716.1 1394161 1394970 + 239 M 77 231 5 0 2 I 0 460 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394162 1394970 239 + . gene_id 1 ; sequence CbirOr135 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394162 1394392 . + . KQ414716.1 exonerate:protein2genome:local exon 1394162 1394392 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394393 1394394 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394393 1394856 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394855 1394856 . + . intron_id 0 ; splice_site "aG" KQ414716.1 exonerate:protein2genome:local cds 1394857 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394857 1394970 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394162 1394970 239 + . alignment_id 1 ; Query CbirOr135 ; Align 1394162 202 231 ; Align 1394857 279 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr135 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 218 Query range: 201 -> 316 Target range: 1387110 -> 1387540 202 : IleLeuHisAlaSerGlyGlnIleGluIleLeuArgGluTrpLeuMetLysIlePh : 220 |||||||||!.!.!!|||||||||!!::!!||| !!:!! :!!! ! |||! IleLeuHisValGlyGlyGlnIleAspLeuLeuCysGlnAsnMetArgAspIleSe 1387111 : ATATTACATGTTGGTGGTCAGATCGATTTATTGTGTCAAAACATGAGAGACATTTC : 1387165 221 : eProLysGluLysGluArgAspAlaAsnLeuPheMetValLysLysAlaIleArgL : 239 !! !!!..!.:!!:!!!:!! !!.!. !.!.! :!!||| ! !.!:!! !! rArgAsnHisGluLysLysValProGlnLysLeuThrIleLysAspValValValA 1387166 : TCGTAATCATGAGAAGAAAGTACCGCAAAAACTGACAATAAAGGATGTCGTTGTTA : 1387222 240 : ysHisGlnLysIleIleIlePheSerGluHisIleGluGluLeuTyrSerAsnIle : 257 :!||||||::!|||||| !.!.|||:!!:!!|||||| !:!!!:!!!! !!||| rgHisGlnArgIleIleArgLeuSerLysAsnIleGluThrValPheThrTyrIle 1387223 : GGCATCAACGAATTATACGACTGTCTAAAAATATCGAGACAGTTTTTACTTATATA : 1387276 258 : AlaMetAlaLeuPheValSerAspThrLeuValIleCysPheLeuGlyPheIleIl : 276 :!!:!:... |||:::|||::: |||||||||||||||:!!.!!|||:!!:! SerLeuCysGlnPheLeuSerAsnMetLeuValIleCysPheIleSerPheValLe 1387277 : TCATTATgccaatttttatcgaatatgcTGGTTATCTGTTTCATAAGCTTCGTTTT : 1387333 277 : eValThr >>>> Target Intron 1 >>>> SerIleGlyThrProAspAl : 285 :|||||| 85 bp |||:!:..!||| !.!..! uValThr++ ++SerLeuAsnThrGluGlnTh 1387334 : GGTAACCgt.........................agTCCTTGAACACGGAACAGAC : 1387445 286 : aThrArgIleIleIleArgThrValValPheTyrPheValIleAsnMetGluAlaP : 304 !||| !!:!!|||:!:!:! ! !! !!:!||| !!!.!:!!||| ||||||| rThrGlyLeuIleLeuLysCysPheProTyrTyrValAlaValAsnCysGluAlaP 1387446 : AACTGGATTAATACTGAAATGTTTTCCCTATTACGTTGCTGTTAATTGTGAAGCAT : 1387502 305 : heIlePheCysPheAlaGlyGluTyrLeuSerSerLys : 316 |||||!!.|||!:!.!!||||||||||||!!!|||||| heIleLeuCysTyrThrGlyGluTyrLeuThrSerLys 1387503 : TCATTTTATGTTATACCGGAGAATATCTAACCTCTAAG : 1387540 vulgar: CbirOr135 201 316 . KQ414716.1 1387110 1387540 + 218 M 77 231 5 0 2 I 0 81 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387111 1387540 218 + . gene_id 2 ; sequence CbirOr135 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387111 1387341 . + . KQ414716.1 exonerate:protein2genome:local exon 1387111 1387341 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387342 1387343 . + . intron_id 1 ; splice_site "Gt" KQ414716.1 exonerate:protein2genome:local intron 1387342 1387426 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387425 1387426 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387427 1387540 . + . KQ414716.1 exonerate:protein2genome:local exon 1387427 1387540 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387111 1387540 218 + . alignment_id 2 ; Query CbirOr135 ; Align 1387111 202 231 ; Align 1387427 279 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr135 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 194 Query range: 231 -> 316 Target range: 1401093 -> 1401431 232 : MetValLysLysAlaIleArgLysHisGlnLysIleIleIlePheSerGluHisIl : 250 ...:::||| |||..!!:!||||||:!!||||||:!!|||:!!|||...|| GlnIleLysPhePheIleAsnArgHisGlnGluIleIleValPheAlaGluArgIl 1401094 : caaataaaattcttcattaACAGACATCAGGAAATTATTGTTTTTGCAGAAAGAAT : 1401148 251 : eGluGluLeuTyrSerAsnIleAlaMetAlaLeuPheValSerAspThrLeuValI : 269 ||||:!!|||!:!!!! !!!!:|||:!:::!! !.!!||||||:!!|||:!!:!!| eGluLysLeuPheThrTyrMetAlaLeuSerGlnLeuValSerAsnThrIleIleI 1401149 : TGAGAAACTTTTTACATACATGGCTCTCAGTCAACTTGTGTCCAATACGATAATTA : 1401205 270 : leCysPheLeuGlyPheIleIleValThr >>>> Target Intron 1 >>>> : 279 |||||! !:!!||||||:!!:!!|||! ! 83 bp leCysCysValGlyPheLeuValValIle++ 1401206 : TATGTTGCGTAGGATTTCTCGTTGTAATTgt......................... : 1401237 280 : SerIleGlyThrProAspAlaThrArgIleIleIleArgThrValValPheTyr : 296 :!!:!! !! ! !:!!!.!..!! !:!::!!:!!!:::::::::::|||||| ++AlaValHisIleAspAsnGlyValProLeuLeuLeuLysSerLeuLeuPheTyr 1401238 : aggCAGTACATATCGACAATGGAGTTCCTCTGTTACTCAaatctcttttattttat : 1401369 297 : PheValIleAsnMetGluAlaPheIlePheCysPheAlaGlyGluTyrLeuSerSe : 315 |||||| !:!:||||||||||||!:!||||||!.!|||||||||||||||! ValValIleCysLeuGluAlaPheIleTyrCysPheValGlyGluTyrLeuSerIl 1401370 : gtgGTTATTTGTTTAGAAGCGTTTATATACTGCTTTGTCGGAGAATATCTCAGTAT : 1401426 316 : rLys : 316 !||| eLys 1401427 : CAAG : 1401431 vulgar: CbirOr135 231 316 . KQ414716.1 1401093 1401431 + 194 M 47 141 5 0 2 I 0 79 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401094 1401431 194 + . gene_id 3 ; sequence CbirOr135 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401094 1401234 . + . KQ414716.1 exonerate:protein2genome:local exon 1401094 1401234 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401235 1401236 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401235 1401317 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1401316 1401317 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1401318 1401431 . + . KQ414716.1 exonerate:protein2genome:local exon 1401318 1401431 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401094 1401431 194 + . alignment_id 3 ; Query CbirOr135 ; Align 1401094 232 141 ; Align 1401318 279 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr135 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 0 -> 85 Target range: 1390523 -> 1390778 1 : MetLysLeuGluAspThrIleSerGlnAlaThrArgValTrpLeuGluValPheGl : 19 |||..!! !.!. ! !:!||||||!:: !!..!..!:!! ! |||..!:!! !|| MetSerHisAsnLysSerIleSerArgProValGluIleGlyLeuArgLeuThrGl 1390524 : ATGTCGCATAACAAAAGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGG : 1390578 20 : yIleTrpProAsnSerSerCysIlePheLeuArgArgMetPheTrpThrAlaAlaL : 38 ||||||||||..!||||||! ! !.!!:!! !|||:!: !|||! ! ! !: yIleTrpProGlySerSerTyrGluIleIleValArgValThrTrpIleIleLeuM 1390579 : AATTTGGCCAGGTTCATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTA : 1390635 39 : euIleIleGluGlnValGlyGlnTyrGlnTyrIleIleMetHisLeuTyrSerThr : 56 !!! !:!!! !|||:!! !||||||!:!|||||||||! !|||||| !!.!!!:! etThrValValGlnIlePheGlnTyrArgTyrIleIleLysHisLeuAspGlySer 1390636 : TGACAGTTGTACAAATATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGT : 1390689 57 : GluValSerGluIleMetAsnLeuLeuSerAlaAlaMetSerPheThrLeuPheCy : 75 .!.:!!:!!.!.:!!!!::!! !:!!.!!.!!.!!:!: !!!:!!:!|||!!.! AsnLeuAlaAsnLeuIleAspSerValGlyThrThrLeuProTyrSerLeuLeuTy 1390690 : AATCTGGCGAACTTAATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTA : 1390746 76 : sIleLysLeuGlyThrPheTrpTyrLysGln : 85 !:::|||||| |||||| !|||!:: rValLysLeuIleIlePheTrpThrLysArg 1390747 : TgtcaaattaattattttctggaCTAAACGT : 1390778 vulgar: CbirOr135 0 85 . KQ414716.1 1390523 1390778 + 140 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390524 1390778 140 + . gene_id 4 ; sequence CbirOr135 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1390524 1390778 . + . KQ414716.1 exonerate:protein2genome:local exon 1390524 1390778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390524 1390778 140 + . alignment_id 4 ; Query CbirOr135 ; Align 1390524 1 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr135 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 228 -> 276 Target range: 1408279 -> 1408423 229 : AsnLeuPheMetValLysLysAlaIleArgLysHisGlnLysIleIleIlePheSe : 247 ||| ! !...:!!!:! !|||!!!!:!||||||:!!||||||||||||:! AsnLysThrGlnLeuArgPhePheIleSerArgHisGlnGlnIleIleIlePheAl 1408280 : AATAAAACTCAACTGAGATTCTTCATCAGCAGACATCAACAGATCATCATATTTGC : 1408334 248 : rGluHisIleGluGluLeuTyrSerAsnIleAlaMetAlaLeuPheValSerAspT : 266 !|||...||||||:!!|||!:!!!! !!:!!|||:!:::!! !.!!:!!|||:!!| aGluArgIleGluLysLeuPheThrTyrLeuAlaLeuSerGlnLeuLeuSerAsnT 1408335 : AGAGAGAATAGAAAAACTGTTTACGTATCTAGCACTTAGTCAACTTCTCTCGAATA : 1408391 267 : hrLeuValIleCysPheLeuGlyPheIleIle : 276 |||||:!!! !|||! !:!!|||!:!|||||| hrLeuIleThrCysCysValGlyTyrIleIle 1408392 : CCCTAATTACTTGCTGCGTGGGTTATATTATC : 1408423 vulgar: CbirOr135 228 276 . KQ414716.1 1408279 1408423 + 108 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408280 1408423 108 + . gene_id 5 ; sequence CbirOr135 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1408280 1408423 . + . KQ414716.1 exonerate:protein2genome:local exon 1408280 1408423 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408280 1408423 108 + . alignment_id 5 ; Query CbirOr135 ; Align 1408280 229 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr127 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 425 Query range: 204 -> 387 Target range: 1394161 -> 1395914 205 : ValPheHisValSerGlyGlnIleAspIleIleCysGlnGluPheArgIleIleCy : 223 :!!||||||:!!.!!|||||||||!!:!!::!: :!!! ... ||| IlePheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAsnIleSe 1394162 : ATATTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaatatttc : 1394216 224 : sThrLysIleProIleHisGlySerSerThrSerThrLeuGlyIleLeuIleGluA : 242 ||| ! !! !||| !!! !|||! !!:!||| ! ! !||||||.!.| rIleLysAspGluLysHisArgLeuSerArgAsnThrThrLysSerLeuIleHisA 1394217 : tattaaagATGAGAAACACAGATTATCGAGAAACACCACCAAATCATTAATTCACA : 1394273 243 : rgHisAsnLysValIleLeuPheSerAspAsnValGluLysLeuPheSerPheIle : 260 |||||:!!::!:!!|||:!! !||||||::!:!!|||!..|||||||||!:!||| rgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIle 1394274 : GACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACATT : 1394327 261 : AlaLeuMetGlnIleValTrpAsnThrLeuValIleCysCysLeuGlyPheIleIl : 279 |||||||||||| :!!!! |||||||||||||||||||||:!!||||||:!!|| AlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGlyPheLeuIl 1394328 : GCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGATTCTTAAT : 1394384 280 : eMetIle >>>> Target Intron 1 >>>> SerValHisAsnAspThrSe : 288 |:!:||| 464 bp :!! !!:!!!..||| :: eValIle++ ++AlaPheAsnThrAspGlyAs 1394385 : AGTAATTgt.........................agGCATTTAATACAGatggaaa : 1394875 289 : rValIleValLeuValLysThrIlePheAlaTyrThrAlaIleMetIleGluAlaP : 307 :::: ......:::||||||::!.!! !|||! !||||||! !!:||||||| nIleLysThrPheIleLysThrLeuLeuPheTyrIleAlaIleThrMetGluAlaP 1394876 : tataaaaacatttataaaaacattACTCTTTTACATCGCTATCACTATGGAAGCAT : 1394932 308 : heIleIleCysPheAlaGlyGluTyrLeuCysLeuLys >>>> Target Intr : 320 |||||.!!! !|||||||||||||||||| !! !||| 353 bp heIlePheSerPheAlaGlyGluTyrLeuSerAsnLys++ 1394933 : TCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAAgt................ : 1394973 321 : on 2 >>>> SerLysSerIleAlaAspAlaAlaTyrGluSerLeuTrpTyrAsp : 334 ||| !||||||::!:!!|||||||||...|||! !|||||| ! ++SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeu 1394974 : .........agAGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTT : 1395366 335 : IleProProAspHisValLysIleIleLeuPheMetIleMetArgSerGlnArgGl : 353 :!: !|||.!. !! ! ! ||||||:!!.!!:!:!!:!!:|||||||||||| ! LeuAspProGlnAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgAr 1395367 : CTGGATCCTCAAGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACG : 1395423 354 : yLeuAlaIleThrAlaGlyArgIleThrAsnLeuSerLeuGluAlaPheAlaSer : 372 !|||.!!||||||||||||!:!.!!! !:!!||||||||||||!.!||||||!:! gLeuThrIleThrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsn+ 1395424 : ATTAACAATCACCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATg : 1395480 373 : >>>> Target Intron 3 >>>> IleMetLysAlaSerValSerTyrIleS : 381 387 bp |||:!:|||||||||!.!|||||||||| + ++IleLeuLysAlaSerAlaSerTyrIleS 1395481 : t.........................agatcTTAAAGGCTTCTGCATCGTACATAT : 1395894 382 : erValLeuHisAlaMetTyr : 387 ||||||||:!!||||||||| erValLeuTyrAlaMetTyr 1395895 : CTGTACTGTATGCGATGTAC : 1395914 vulgar: CbirOr127 204 387 . KQ414716.1 1394161 1395914 + 425 M 77 231 5 0 2 I 0 460 3 0 2 M 38 114 5 0 2 I 0 349 3 0 2 M 52 156 5 0 2 I 0 383 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394162 1395914 425 + . gene_id 1 ; sequence CbirOr127 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394162 1394392 . + . KQ414716.1 exonerate:protein2genome:local exon 1394162 1394392 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394393 1394394 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394393 1394856 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394855 1394856 . + . intron_id 0 ; splice_site "aG" KQ414716.1 exonerate:protein2genome:local cds 1394857 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394857 1394970 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394971 1394972 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394971 1395323 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1395322 1395323 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1395324 1395479 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395479 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1395480 1395481 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1395480 1395866 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1395865 1395866 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1395867 1395914 . + . KQ414716.1 exonerate:protein2genome:local exon 1395867 1395914 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394162 1395914 425 + . alignment_id 1 ; Query CbirOr127 ; Align 1394162 205 231 ; Align 1394857 282 114 ; Align 1395324 320 156 ; Align 1395867 372 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr127 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 288 Query range: 0 -> 205 Target range: 1390523 -> 1392022 1 : MetAlaValThrSerThrValSerProSerLeuLysIleGlyLeuArgLeuLeuGl : 19 |||:!! !!.!!.!!:!:!!|||! ! !!:!!:!!||||||||||||||| !|| MetSerHisAsnLysSerIleSerArgProValGluIleGlyLeuArgLeuThrGl 1390524 : ATGTCGCATAACAAAAGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGG : 1390578 20 : yValTrpProGlyValProLeuSerThrPheTyrTrpLeuThrPheMetSerSerI : 38 |:!!||||||||| ! !!! !..!! !.!! ! ! :!!|||!::!!:! ! !! yIleTrpProGlySerSerTyrGluIleIleValArgValThrTrpIleIleLeuM 1390579 : AATTTGGCCAGGTTCATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTA : 1390635 39 : leLeuIleLeuGlnTyrPheGlnTyrGlnTyrIlePheGluHisPheLysIleSer : 56 !: !:!!:!!||| |||||||||!:!||||||.!.:!!|||.!! ! !||| etThrValValGlnIlePheGlnTyrArgTyrIleIleLysHisLeuAspGlySer 1390636 : TGACAGTTGTACAAATATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGT : 1390689 57 : GluLeuProAsnLeuValAspGlyLeuProAlaThrLeuAspTyrThrLeuThrPh : 75 .!.||| !!||||||:!!|||.!!:!! !.!!|||||| !|||!:!||| !!: AsnLeuAlaAsnLeuIleAspSerValGlyThrThrLeuProTyrSerLeuLeuTy 1390690 : AATCTGGCGAACTTAATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTA : 1390746 76 : eLeuLysLeuAlaSerLeuTrpIleHisArg{Ar} >>>> Target Intron : 86 !:::|||||| ...||| ! ! |||{ !} 884 bp rValLysLeuIleIlePheTrpThrLysArg{Gl}++ 1390747 : TgtcaaattaattattttctggaCTAAACGT{GG}gt................... : 1390783 87 : 1 >>>> {g}ValIleHisGlnIleLeuAsnAlaMetAspAsnAspTrpCysGlu : 101 {!}:::.........:::||| !.!|||..!||||||||| !!.!. ++{y}IlePheGluAsnMetLeuValGlyMetSerAsnAspTrpSerAsn 1390784 : ......ag{a}atattcgaaaatatgtTAGTGGGAATGTCTAACGATTGGAGTAAT : 1391708 102 : CysIleGlyValAspGlnTyrLeuGlnValMetArgValLysAlaAsnIleSerHi : 120 ! ! !..!..! ! !!:!!.!.!.!|||! ! !||||||.!.:!!:!!:! SerSerSerThrLysPheAspIleAsnAlaMetIleSerLysAlaGluLeuAlaTy 1391709 : TCTTCATCAACGAAATTTGACATAAACGCCATGATAAGTAAAGCTGAACTTGCGTA : 1391765 121 : sPheCysSerAsnAlaMetLeuSerPheAsnAlaValAlaGlyValLeuTyrLeuL : 139 ! !! !|||!!.!.!!!::!!||| !!|||:!!|||! ! !! !||| ! rArgTyrSerLysValIleMetSerThrTyrAlaIleAlaValPheAlaTyrThrS 1391766 : TCGTTATTCGAAGGTAATTATGAGCACATATGCTATTGCCGTTTTCGCTTATACCA : 1391822 140 : euGlyGluTyrAlaIleArgPheLeuTyrLeuAlaGluAsnTyrAsnAspThrLeu : 157 !! ! !:!! !.!!! ! !! ! !! !! !! .!.|||:!! ! !! ! erValPhePheGluPheMetArgHisAspAsnAspGlyGluTyrAspLeuLysSer 1391823 : GCGTGTTTTTCGAGTTTATGCGTCACGACAACGACGGCGAATATGATTTAAAGTCT : 1391876 158 : ArgGlnLeuProIleLysValGlnLeuProPheGluIleAsnArgSerProThrPh : 176 |||:!!||| !!!:|||:!!.!.|||||||||! ! ! !!!:!!!!||||||!: ArgGluLeuLeuMetLysMetAspLeuProPheAlaTyrTyrLysThrProThrTy 1391877 : CGAGAACTTTTGATGAAAATGGACCTCCCGTTTGCGTATTACAAAACACCGACGTA : 1391933 177 : eGluLeuLeuValIleValLeuPheIleHisValMetLeuAsnValCysThrValA : 195 !:!!! !:!! !!:!!|||! !|||:!!!!.:!!:!!:!!|||!.!! !.!!:!!! rGlnTrpValPheValValGlnPheLeuGlnLeuLeuIleAsnAlaSerAlaIleG 1391934 : TCAATGGGTATTTGTTGTACAATTTCTTCAGCTGTTGATAAATGCATCTGCTATTG : 1391990 196 : laValIleAsnAlaLeuIleLeuThrLeuVal : 205 .!:!!:!!:!!|||||||||:!!||||||||| lyMetLeuAspAlaLeuIleIleThrLeuVal 1391991 : GTATGTTAGATGCTTTGATAATTACGTTGGTA : 1392022 vulgar: CbirOr127 0 205 . KQ414716.1 1390523 1392022 + 288 M 85 255 S 0 2 5 0 2 I 0 880 3 0 2 S 1 1 M 119 357 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390524 1392022 288 + . gene_id 2 ; sequence CbirOr127 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1390524 1390780 . + . KQ414716.1 exonerate:protein2genome:local exon 1390524 1390780 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1390781 1390782 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1390781 1391664 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1391663 1391664 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1391665 1392022 . + . KQ414716.1 exonerate:protein2genome:local exon 1391665 1392022 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390524 1392022 288 + . alignment_id 2 ; Query CbirOr127 ; Align 1390524 1 255 ; Align 1391666 87 357 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr127 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 206 Query range: 230 -> 319 Target range: 1408276 -> 1408635 231 : SerSerThrSerThrLeuGlyIleLeuIleGluArgHisAsnLysValIleLeuPh : 249 !.!!:!! !!!! !||| !!.!!!!!|||...||||||.!.:!!:!!|||:!!|| LysAsnLysThrGlnLeuArgPhePheIleSerArgHisGlnGlnIleIleIlePh 1408277 : AAGAATAAAACTCAACTGAGATTCTTCATCAGCAGACATCAACAGATCATCATATT : 1408331 250 : eSerAspAsnValGluLysLeuPheSerPheIleAlaLeuMetGlnIleValTrpA : 268 |:!!!!:!..:!!||||||||||||!!!!:!:!!||||||! |||:!!:!!! !| eAlaGluArgIleGluLysLeuPheThrTyrLeuAlaLeuSerGlnLeuLeuSerA 1408332 : TGCAGAGAGAATAGAAAAACTGTTTACGTATCTAGCACTTAGTCAACTTCTCTCGA : 1408388 269 : snThrLeuValIleCysCysLeuGlyPheIleIleMetIle >>>> Target I : 282 ||||||||:!!! !||||||:!!|||!:!|||||| .!! 92 snThrLeuIleThrCysCysValGlyTyrIleIleAlaPhe++ 1408389 : ATACCCTAATTACTTGCTGCGTGGGTTATATTATCGCATTTgt............. : 1408432 283 : ntron 1 >>>> SerValHisAsnAspThrSerValIleValLeuValLysThr : 295 bp :!!:!!!!.|||:!!!.!.!! !!! !:!!|||:!!||| ! ++AlaLeuGlnAsnAsnAsnGlyPheLysMetLeuIleLysPhe 1408433 : ............agGCACTACAAAATAATAATGGATTTAAAATGTTGATCAAATTT : 1408561 296 : IlePheAlaTyrThrAlaIleMetIleGluAlaPheIleIleCysPheAlaGlyGl : 314 :!! ! !|||! !|||:!: !|||||||||||| !|||||||||||||| ValValTyrTyrMetAlaValCysSerGluAlaPheIleTyrCysPheAlaGlyGl 1408562 : GTTGTATATTACATGGCTGTGTGCTCAGAAGCGTTCATATACTGCTTTGCTGGAGA : 1408618 315 : uTyrLeuCysLeuLys : 319 ||||||| !:!!||| uTyrLeuAsnIleLys 1408619 : GTACCTTAATATCAAG : 1408635 vulgar: CbirOr127 230 319 . KQ414716.1 1408276 1408635 + 206 M 51 153 5 0 2 I 0 88 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408277 1408635 206 + . gene_id 3 ; sequence CbirOr127 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408277 1408429 . + . KQ414716.1 exonerate:protein2genome:local exon 1408277 1408429 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408430 1408431 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408430 1408521 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1408520 1408521 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1408522 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408522 1408635 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408277 1408635 206 + . alignment_id 3 ; Query CbirOr127 ; Align 1408277 231 153 ; Align 1408522 282 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr127 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 194 Query range: 204 -> 322 Target range: 1387110 -> 1387549 205 : ValPheHisValSerGlyGlnIleAspIleIleCysGlnGluPheArgIleIleCy : 223 :!!!!.||||||.!!||||||||||||:!!:!:||||||.!..!.||| !|||! IleLeuHisValGlyGlyGlnIleAspLeuLeuCysGlnAsnMetArgAspIleSe 1387111 : ATATTACATGTTGGTGGTCAGATCGATTTATTGTGTCAAAACATGAGAGACATTTC : 1387165 224 : sThrLysIleProIleHisGlySerSerThrSerThrLeuGlyIleLeuIleGluA : 242 ! !!!. ! !! ! ! ! !!..!! ! !|||:!! ! !:!!:!!! | rArgAsnHisGluLysLysValProGlnLysLeuThrIleLysAspValValValA 1387166 : TCGTAATCATGAGAAGAAAGTACCGCAAAAACTGACAATAAAGGATGTCGTTGTTA : 1387222 243 : rgHisAsnLysValIleLeuPheSerAspAsnValGluLysLeuPheSerPheIle : 260 |||||.!.::!:!!|||! !.!.||| ! |||:!!|||! !:!!|||!!!!:!||| rgHisGlnArgIleIleArgLeuSerLysAsnIleGluThrValPheThrTyrIle 1387223 : GGCATCAACGAATTATACGACTGTCTAAAAATATCGAGACAGTTTTTACTTATATA : 1387276 261 : AlaLeuMetGlnIleValTrpAsnThrLeuValIleCysCysLeuGlyPheIleIl : 279 :!!||| |||...::: ||| ||||||||||||! !:!!.!!|||:!!:! SerLeuCysGlnPheLeuSerAsnMetLeuValIleCysPheIleSerPheValLe 1387277 : TCATTATgccaatttttatcgaatatgcTGGTTATCTGTTTCATAAGCTTCGTTTT : 1387333 280 : eMetIle >>>> Target Intron 1 >>>> SerValHisAsnAspThrSe : 288 ::!:! ! 85 bp |||:!!:!!!..!!: !!! uValThr++ ++SerLeuAsnThrGluGlnTh 1387334 : GGTAACCgt.........................agTCCTTGAACACGGAACAGAC : 1387445 289 : rValIleValLeuValLysThrIlePheAlaTyrThrAlaIleMetIleGluAlaP : 307 !..! !:!!:!!:!!||| !.!! ! !|||..!|||:!!! !||||||| rThrGlyLeuIleLeuLysCysPheProTyrTyrValAlaValAsnCysGluAlaP 1387446 : AACTGGATTAATACTGAAATGTTTTCCCTATTACGTTGCTGTTAATTGTGAAGCAT : 1387502 308 : heIleIleCysPheAlaGlyGluTyrLeuCysLeuLysSerLysSer : 322 |||||:!!|||!:!.!!|||||||||||| !! !||| :::::: heIleLeuCysTyrThrGlyGluTyrLeuThrSerLysValArgAsn 1387503 : TCATTTTATGTTATACCGGAGAATATCTAACCTCTAAGgtaagaaat : 1387549 vulgar: CbirOr127 204 322 . KQ414716.1 1387110 1387549 + 194 M 77 231 5 0 2 I 0 81 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387111 1387549 194 + . gene_id 4 ; sequence CbirOr127 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387111 1387341 . + . KQ414716.1 exonerate:protein2genome:local exon 1387111 1387341 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387342 1387343 . + . intron_id 1 ; splice_site "Gt" KQ414716.1 exonerate:protein2genome:local intron 1387342 1387426 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387425 1387426 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387427 1387549 . + . KQ414716.1 exonerate:protein2genome:local exon 1387427 1387549 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387111 1387549 194 + . alignment_id 4 ; Query CbirOr127 ; Align 1387111 205 231 ; Align 1387427 282 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr127 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 278 -> 372 Target range: 1401308 -> 1402594 279 : IleMetIleSerValHisAsnAspThrSerValIleValLeuValLysThrIlePh : 297 |||::: :!!||||||! !|||!.!.!!||| !:!!|||:!!|||::::::.. IleLeuGlnAlaValHisIleAspAsnGlyValProLeuLeuLeuLysSerLeuLe 1401309 : atattacaggCAGTACATATCGACAATGGAGTTCCTCTGTTACTCAaatctctttt : 1401363 298 : eAlaTyrThrAlaIleMetIleGluAlaPheIleIleCysPheAlaGlyGluTyrL : 316 . |||...!.!||| :!!|||||||||||| !||||||!.!|||||||||| uPheTyrValValIleCysLeuGluAlaPheIleTyrCysPheValGlyGluTyrL 1401364 : attttatgtgGTTATTTGTTTAGAAGCGTTTATATACTGCTTTGTCGGAGAATATC : 1401420 317 : euCysLeu{Ly} >>>> Target Intron 1 >>>> {s}SerLysSerIle : 323 || !!:!!{||} 1004 bp {|}|||:!! !||| euSerIle{Ly}+- --{s}SerGlnLeuIle 1401421 : TCAGTATC{AA}gg.........................ta{G}AGCCAACTAATC : 1402445 324 : AlaAspAlaAlaTyrGluSerLeuTrpTyrAspIleProProAspHisValLysIl : 342 !.!:!!.!!|||||||||! !||||||||||||:!!! ! !! !.!. !:!!:! GlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSerGlnLe 1402446 : GGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAGCCAACT : 1402502 343 : eIleLeuPheMetIleMetArgSerGlnArgGlyLeuAlaIleThrAlaGlyArgI : 361 !:!!:!! !:!:|||:!!|||||||||!:!|||!!!.!!...||| |||:::. uLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysP 1402503 : TCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACGTttacttttggaaaat : 1402559 362 : leThrAsnLeuSerLeuGluAlaPheAlaSerIle : 372 ..::::::||||||||||||::!|||.!!:!!:!! heSerSerLeuSerLeuGluSerPheThrAlaVal 1402560 : tttcaagtctCTCCTTGGAAAGCTTTACGGCCGTA : 1402594 vulgar: CbirOr127 278 372 . KQ414716.1 1401308 1402594 + 175 M 40 120 S 0 2 5 0 2 I 0 1000 3 0 2 S 1 1 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401309 1402594 175 + . gene_id 5 ; sequence CbirOr127 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401309 1401430 . + . KQ414716.1 exonerate:protein2genome:local exon 1401309 1401430 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401431 1401432 . + . intron_id 1 ; splice_site "GG" KQ414716.1 exonerate:protein2genome:local intron 1401431 1402434 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1402433 1402434 . + . intron_id 0 ; splice_site "TA" KQ414716.1 exonerate:protein2genome:local cds 1402435 1402594 . + . KQ414716.1 exonerate:protein2genome:local exon 1402435 1402594 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401309 1402594 175 + . alignment_id 5 ; Query CbirOr127 ; Align 1401309 279 120 ; Align 1402436 320 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr127 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 235 -> 281 Target range: 1401096 -> 1401234 236 : LeuGlyIleLeuIleGluArgHisAsnLysValIleLeuPheSerAspAsnValGl : 254 ::: ......|||.!.||||||.!.:!!:!!|||:!!|||:!!!!:!..:!!|| IleLysPhePheIleAsnArgHisGlnGluIleIleValPheAlaGluArgIleGl 1401097 : ataaaattcttcattaACAGACATCAGGAAATTATTGTTTTTGCAGAAAGAATTGA : 1401151 255 : uLysLeuPheSerPheIleAlaLeuMetGlnIleValTrpAsnThrLeuValIleC : 273 ||||||||||!!!!:!!!:||||||! |||:!!|||! ||||||:!!:!!|||| uLysLeuPheThrTyrMetAlaLeuSerGlnLeuValSerAsnThrIleIleIleC 1401152 : GAAACTTTTTACATACATGGCTCTCAGTCAACTTGTGTCCAATACGATAATTATAT : 1401208 274 : ysCysLeuGlyPheIleIleMetIle : 281 |||||:!!||||||:!!:!!:!:||| ysCysValGlyPheLeuValValIle 1401209 : GTTGCGTAGGATTTCTCGTTGTAATT : 1401234 vulgar: CbirOr127 235 281 . KQ414716.1 1401096 1401234 + 139 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401097 1401234 139 + . gene_id 6 ; sequence CbirOr127 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1401097 1401234 . + . KQ414716.1 exonerate:protein2genome:local exon 1401097 1401234 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401097 1401234 139 + . alignment_id 6 ; Query CbirOr127 ; Align 1401097 236 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr134PSE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 152 -> 203 Target range: 1401332 -> 1402489 153 : AsnGlyLeuAlaIleLeuValLysSerValLeuPheTyrLeuValMetAsnLeuGl : 171 ||||||:!! !!:!:|||:!!||||||:::|||||||||:::|||!!: !||||| AsnGlyValProLeuLeuLeuLysSerLeuLeuPheTyrValValIleCysLeuGl 1401333 : AATGGAGTTCCTCTGTTACTCAaatctcttttattttatgtgGTTATTTGTTTAGA : 1401387 172 : uAlaPheIleTyrCysPheAlaGlyGluTyrLeuArgAlaLys >>>> Target : 186 |||||||||||||||||||!.!||||||||||||!!! !||| 10 uAlaPheIleTyrCysPheValGlyGluTyrLeuSerIleLys++ 1401388 : AGCGTTTATATACTGCTTTGTCGGAGAATATCTCAGTATCAAGgt........... : 1401434 187 : Intron 1 >>>> SerLysLeuIleGlyAsnAlaAlaTyrAsnSerLeuTrpT : 199 04 bp |||:!!||||||||||||.!!||||||.!.! !||||||| ++SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpT 1401435 : ..............agAGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGT : 1402475 200 : yrGlyValAlaSer : 203 ||! !:!! !||| yrAspLeuArgSer 1402476 : ACGATTTACGTTCA : 1402489 vulgar: CbirOr134PSE 152 203 . KQ414716.1 1401332 1402489 + 160 M 33 99 5 0 2 I 0 1000 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401333 1402489 160 + . gene_id 1 ; sequence CbirOr134PSE ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401333 1401431 . + . KQ414716.1 exonerate:protein2genome:local exon 1401333 1401431 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401432 1401433 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401432 1402435 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1402434 1402435 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402436 1402489 . + . KQ414716.1 exonerate:protein2genome:local exon 1402436 1402489 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401333 1402489 160 + . alignment_id 1 ; Query CbirOr134PSE ; Align 1401333 153 99 ; Align 1402436 186 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr134PSE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 3 -> 68 Target range: 1390535 -> 1390730 4 : SerThrValSerGlnValValLysIleGlyLeuArgAlaCysGlyIleTrpProTy : 22 !.!!:!:!!|||!:: !|||:!!|||||||||||| ! !|||||||||||| LysSerIleSerArgProValGluIleGlyLeuArgLeuThrGlyIleTrpProGl 1390536 : AAAAGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGGAATTTGGCCAGG : 1390590 23 : rLeuProSerThrProLeuTyrArgPheLeuTrpIleValMetLeuSerIleAlaL : 41 !! ! !!! ! ! !:!! !||| ! !||||||:!!:!::!!!!!:!!!.!! ySerSerTyrGluIleIleValArgValThrTrpIleIleLeuMetThrValValG 1390591 : TTCATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTATGACAGTTGTAC : 1390647 42 : euLeuIleGlnTyrUnkTyrMetValIleHisTyrAsnThrAspAsnPheSerTyr : 59 !:!!.!!|||||| |||!!::!!! ||| !:!! !..!|||.!.:!! !! lnIlePheGlnTyrArgTyrIleIleLysHisLeuAspGlySerAsnLeuAlaAsn 1390648 : AAATATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGTAATCTGGCGAAC : 1390701 60 : PheMetAspGlyValSerSerAlaMet : 68 !!.!!:|||.!!|||.!!!!!.!!:!: LeuIleAspSerValGlyThrThrLeu 1390702 : TTAATAGACAGCGTCGGCACTACTTTA : 1390730 vulgar: CbirOr134PSE 3 68 . KQ414716.1 1390535 1390730 + 119 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390536 1390730 119 + . gene_id 2 ; sequence CbirOr134PSE ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1390536 1390730 . + . KQ414716.1 exonerate:protein2genome:local exon 1390536 1390730 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390536 1390730 119 + . alignment_id 2 ; Query CbirOr134PSE ; Align 1390536 4 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr134PSE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 152 -> 185 Target range: 1408536 -> 1408635 153 : AsnGlyLeuAlaIleLeuValLysSerValLeuPheTyrLeuValMetAsnLeuGl : 171 ||||||!!! !!!:|||:!!|||! !|||:!!!:!|||:!!!.!:!! !! !|| AsnGlyPheLysMetLeuIleLysPheValValTyrTyrMetAlaValCysSerGl 1408537 : AATGGATTTAAAATGTTGATCAAATTTGTTGTATATTACATGGCTGTGTGCTCAGA : 1408591 172 : uAlaPheIleTyrCysPheAlaGlyGluTyrLeuArgAlaLys : 185 ||||||||||||||||||||||||||||||||||!.! !||| uAlaPheIleTyrCysPheAlaGlyGluTyrLeuAsnIleLys 1408592 : AGCGTTCATATACTGCTTTGCTGGAGAGTACCTTAATATCAAG : 1408635 vulgar: CbirOr134PSE 152 185 . KQ414716.1 1408536 1408635 + 106 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408537 1408635 106 + . gene_id 3 ; sequence CbirOr134PSE ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1408537 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408537 1408635 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408537 1408635 106 + . alignment_id 3 ; Query CbirOr134PSE ; Align 1408537 153 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr124 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 323 -> 392 Target range: 12673 -> 12388 324 : AlaLysSerLysSerIleGlyGluAlaIleTyrGlySerLeuTrpTyrAsnLeuSerPro : 343 ...||| |||! !:!! ! :!!! !|||.!!:!!|||||||||||| !..! ! ValLysIleLysIleValHisPheSerArgTyrSerAlaLeuTrpTyrAsnSerAspLys 12673 : gtgaaaatcaAAATTGTCCATTTTTCTAGATACAGCGCTTTGTGGTATAACAGCGACAAG : 12616 344 : SerAspThrArgIleLeuLysPheIleMetLeuArgCysGlnLysArgLeuThrIleThr : 363 !!! ! !:!:!!! !!!. :!: !!.!|||! !... !! ! !|||||| ArgThrGlnSerLeuPheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThr 12615 : AGAACGCAATCGTTGTTTGTATTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAACA : 12556 364 : AlaGlyGlyValIleAspLeuThrLeuGluGlyPheThrSer >>>> Target Intr : 378 |||||||||:!!||| :!!!.!|||:!!.!!|||:!!..! 78 bp AlaGlyGlyLeuIleThrMetAsnLeuGlnSerPheSerGlu++ 12555 : GCCGGTGGACTAATTACAATGAACTTGCAAAGTTTCTCAGAGgt................ : 12509 379 : on 1 >>>> IleMetLysAlaSerValSerTyrValSerValLeuAsnAlaMet : 392 |||:!:|||.!!|||||||||||| !! !||||||!!.:!!:!: ++IleValLysThrSerValSerTyrTyrMetValLeuLysSerVal 12508 : .........agATTGTAAAGACGTCTGTCTCGTACTACATGGTACTGAAATCCGTA : 12389 vulgar: CbirOr124 323 392 . KQ414772.1 12673 12388 - 110 M 54 162 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 12389 12673 110 - . gene_id 1 ; sequence CbirOr124 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 12512 12673 . - . KQ414772.1 exonerate:protein2genome:local exon 12512 12673 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 12510 12511 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 12434 12511 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 12434 12435 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 12389 12433 . - . KQ414772.1 exonerate:protein2genome:local exon 12389 12433 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 12389 12673 110 - . alignment_id 1 ; Query CbirOr124 ; Align 12674 324 162 ; Align 12434 378 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr124 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 323 -> 392 Target range: 12676 -> 12391 324 : AlaLysSerLysSerIleGlyGluAlaIleTyrGlySerLeuTrpTyrAsnLeuSerPro : 343 ...||| |||! !:!! ! :!!! !|||..!:!!|||||||||||| !..! ! ValLysIleLysIleValHisPheSerArgTyrAsnAlaLeuTrpTyrAsnSerAspLys 12676 : gtgaaaatcaAAATTGTCCATTTTTCTAGATACAACGCTTTGTGGTATAACAGCGACAAG : 12619 344 : SerAspThrArgIleLeuLysPheIleMetLeuArgCysGlnLysArgLeuThrIleThr : 363 !!! ! !:!:!!! !!!. !:!: !!.!|||! !... !! ! !|||||| ArgThrGlnSerLeuPheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThr 12618 : AGAACGCAATCGTTGTTTGTATTAGCATTAAGAAATTGTCTATCTGCTCCTCAAATAACA : 12559 364 : AlaGlyGlyValIleAspLeuThrLeuGluGlyPheThrSer >>>> Target Intr : 378 |||||||||:!!||| :!!!.!|||:!!.!!|||:!!..! 78 bp AlaGlyGlyLeuIleThrMetAsnLeuGlnSerPheSerGlu++ 12558 : GCCGGTGGACTAATTACAATGAACTTGCAAAGTTTCTCAGAGgt................ : 12512 379 : on 1 >>>> IleMetLysAlaSerValSerTyrValSerValLeuAsnAlaMet : 392 |||:!:|||.!!|||||||||||| !! !||||||!!.:!!:!: ++IleValLysThrSerValSerTyrTyrMetValLeuLysSerVal 12511 : .........agATTGTAAAGACGTCTGTCTCGTACTACATGGTACTGAAATCCGTA : 12392 vulgar: CbirOr124 323 392 . LHQN01017803.1 12676 12391 - 112 M 54 162 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 12392 12676 112 - . gene_id 1 ; sequence CbirOr124 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 12515 12676 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12515 12676 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 12513 12514 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 12437 12514 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 12437 12438 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 12392 12436 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12392 12436 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 12392 12676 112 - . alignment_id 1 ; Query CbirOr124 ; Align 12677 324 162 ; Align 12437 378 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr127 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 303 -> 372 Target range: 51843 -> 52050 304 : IleGluAlaPheIleIleCysPheAlaGlyGluTyrLeuCysLeuLysSerLysSerIle : 323 :!!.!..!!|||||| ! !!! ::::::... ...::!||| ..!||| ValAsnThrPheIleAlaSerCysHis***LysPhePheThrPheGlnSerValGluIle 51844 : GTTAATACTTTTATTGCAAGTTgtcattaaaaattcttcacttttcaGAGCGTTGAAATA : 51901 324 : AlaAspAlaAlaTyrGluSerLeuTrpTyrAspIleProProAspHisValLysIleIle : 343 |||:!!|||||||||!!:||| !||||||:!!:!: !!||| ! :!!!.!|||:!::!! AlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLysAsnAlaLysLeuLeu 51902 : GCTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTGCTA : 51961 344 : LeuPheMetIleMetArgSerGlnArgGlyLeuAlaIleThrAlaGlyArgIleThrAsn : 363 |||.!!!!:!!: |||:!!::! ! !||| !|||||||||||||||.!!.!!!.! LeuIleIleMetArgArgAlaArgLeuProLeuGlnIleThrAlaGlyArgPheAlaThr 51962 : CTAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCAGGTAGATTTGCTACT : 52021 364 : LeuSerLeuGluAlaPheAlaSerIle : 372 !!!!!!||| ! !!:!:!!..!:!: PheThrLeuMetLeuTyrSerGlnVal 52022 : TTCACTCTGATGCTGTATTCACAGGTa : 52050 vulgar: CbirOr127 303 372 . KQ414804.1 51843 52050 + 116 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51844 52050 116 + . gene_id 1 ; sequence CbirOr127 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 51844 52050 . + . KQ414804.1 exonerate:protein2genome:local exon 51844 52050 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51844 52050 116 + . alignment_id 1 ; Query CbirOr127 ; Align 51844 304 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr127 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 319 -> 374 Target range: 39965 -> 40130 320 : SerLysSerIleAlaAspAlaAlaTyrGluSerLeuTrpTyrAspIleProProAspHis : 339 |||! .!!|||!.!.!.:!!||||||!!:!!! !|||||||||:!!|||||| ! ||| SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 340 : ValLysIleIleLeuPheMetIleMetArgSerGlnArgGlyLeuAlaIleThrAlaGly : 359 !.! :!!:!!.!!:!!||| |||:!!||| !..!!!! !|||||||||||| AlaValSerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGly 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGA : 40083 360 : ArgIleThrAsnLeuSerLeuGluAlaPheAlaSerIleMetLys : 374 !:!.!!!:! !!!!||||||||| !||| !:!!:!:! ::! LysPheSerProPheSerLeuGluLeuPheAsnAlaValSerArg 40084 : AAATTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTGTGAGTCGA : 40130 vulgar: CbirOr127 319 374 . KQ414804.1 39965 40130 + 115 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40130 115 + . gene_id 2 ; sequence CbirOr127 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39966 40130 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40130 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39966 40130 115 + . alignment_id 2 ; Query CbirOr127 ; Align 39966 320 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr123 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 319 -> 377 Target range: 39965 -> 40139 320 : SerLysSerIleSerAspAlaValTyrGluSerLeuTrpTyrAspMetProProThrAsp : 339 |||! .!!|||.!!.!.:!!!.!|||!!:!!! !|||||||||:!:||||||! ! !! SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 340 : SerArgIleLeuLeuPheIleIleIleArgSerGlnLysArgLeuThrIleThrAlaGly : 359 :!! ! |||:!!.!!:!:||| !|||:!!||| ! !!!! !|||||||||||| AlaValSerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGly 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGA : 40083 360 : LysValValAspLeuThrLeuGluGlyPheThrSerIleMetLysAlaSerAla : 377 ||| !! ! !!!!:!!|||||| !|||!.!:!!:!:! ::! !! !||| LysPheSerProPheSerLeuGluLeuPheAsnAlaValSerArgIleIleAla 40084 : AAATTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTGTGAGTCGAATTATCGCT : 40139 vulgar: CbirOr123 319 377 . KQ414804.1 39965 40139 + 103 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40139 103 + . gene_id 1 ; sequence CbirOr123 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39966 40139 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40139 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39966 40139 103 + . alignment_id 1 ; Query CbirOr123 ; Align 39966 320 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr131 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 293 -> 376 Target range: 51843 -> 52349 294 : MetGluAlaPheIleSerCysPheLeuGlyGluTyrLeuSerThrLysSerLysThrIle : 313 :!:.!..!!||||||:!! !!! ::::::...::: ::!||| !||| ValAsnThrPheIleAlaSerCysHis***LysPhePheThrPheGlnSerValGluIle 51844 : GTTAATACTTTTATTGCAAGTTgtcattaaaaattcttcacttttcaGAGCGTTGAAATA : 51901 314 : GlyAspAlaAlaTyrGluSerLeuTrpTyrAsnArgThrProAlaGlnAsnArgAspLeu : 333 !.!:!!|||||||||!!:||| !||||||||| !:!!||| !.!. !:! ||| AlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLysAsnAlaLysLeuLeu 51902 : GCTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTGCTA : 51961 334 : LeuLeuMetIleMetArgSerGlnLysHisLeuSerLeuThrValGlyLysValValAsp : 353 |||:!!!!:!!: |||:!!::! !! !|||..!:!!|||!.!|||!:! !!!.! ! LeuIleIleMetArgArgAlaArgLeuProLeuGlnIleThrAlaGlyArgPheAlaThr 51962 : CTAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCAGGTAGATTTGCTACT : 52021 354 : LeuSerLeuGlnGlnPheAlaSer >>>> Target Intron 1 >>>> ValValL : 364 !!!!!!|||..!! !!:!:!!..! 251 bp :!!:!!| PheThrLeuMetLeuTyrSerGln++ ++IleLeuL 52022 : TTCACTCTGATGCTGTATTCACAGgt.........................agATTTTAA : 52305 365 : ysValSerAla<-><->SerTyrValSerValLeuHisAlaMet : 376 ||..!|||!.! .!!|||||||||||||||:!!|||||| ysThrSerValGlyLysGlyTyrValSerValLeuTyrAlaMet 52306 : AAACCTCGGTGGGAAAAGGTTATGTTTCTGTTCTATACGCAATG : 52349 vulgar: CbirOr131 293 376 . KQ414804.1 51843 52349 + 111 M 68 204 5 0 2 I 0 247 3 0 2 M 6 18 G 0 6 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51844 52349 111 + . gene_id 1 ; sequence CbirOr131 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51844 52047 . + . KQ414804.1 exonerate:protein2genome:local exon 51844 52047 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 52048 52049 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 52048 52298 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 52297 52298 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 52299 52349 . + . KQ414804.1 exonerate:protein2genome:local exon 52299 52349 . + . insertions 6 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51844 52349 111 + . alignment_id 1 ; Query CbirOr131 ; Align 51844 294 204 ; Align 52299 362 18 ; Align 52323 368 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr131 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 142 -> 235 Target range: 31311 -> 31590 143 : AsnGlnSerAspValArgGluLeuLeuLeuLysMetGluLeuProPheAlaIleGluSer : 162 ||||||!.!.!.! !||| !||||||! ! ! !!!||||||! !|||... !! AsnGlnLysGlnAspArgLeuLeuLeuTyrProGlyTyrPheProPheAspIleArgPro 31312 : AACCAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTATTTTCCCTTCGATATTCGTCCA : 31369 163 : SerSerValTyrThrAlaValLeuIleThrGlnPheValHisGlnThrSerAlaAlaSer : 182 ! !.!!||| !:!!..! !.!! !||| ! :!! ! !||||||!.!! ! IleGlyValLeuLeuSerThrAsnPheGlyGlnValLeuAlaAlaTyrSerAlaValIle 31370 : ATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCAGCGTATTCCGCTGTTATC : 31429 183 : MetValGlyValIleAlaSerMetLeuIleIleLeuValLeuHisAlaCysGlyGlnIle : 202 ! ! !..!:!:! !!!!.!.:!! !!:|||:!!:!!||| !|||||||||.!! SerTyrThrThrValAspThrPheIleAlaMetLeuIleMetHisIleCysGlyGlnPhe 31430 : AGTTACACCACCGTGGATACATTTATCGCGATGCTGATAATGCACATATGCGGACAATTT : 31489 203 : AspIleValArgGlnLysLeuSerGluIleThrArgAsnAspIleLysProSerGluAla : 222 !!:|||:!!|||||||||||| !!..!:!:! ! !:!!!!:! ||| !!!!!...!.! GluIleLeuArgGlnLysLeuArgArgLeuMetAspAspGluLysLysThrArgSerVal 31490 : GAGATACTGAGACAGAAATTACGAAGGCTGATGGATGACGAGAAGAAGACCAGAAGCGTG : 31549 223 : GluSerIleMetLysThrLeuIleValArgHisGlnArg : 235 !!:..!|||..!||| !|||:!!:!!! ! :!!||| AspGluIleGlnLysGluLeuValLeuIleIleGluArg 31550 : GATGAGATTCAGAAGGAGCTGGTTTTGATCATAGAGAGG : 31590 vulgar: CbirOr131 142 235 . KQ414804.1 31311 31590 + 109 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31312 31590 109 + . gene_id 2 ; sequence CbirOr131 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31312 31590 . + . KQ414804.1 exonerate:protein2genome:local exon 31312 31590 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 31312 31590 109 + . alignment_id 2 ; Query CbirOr131 ; Align 31312 143 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr120 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 292 -> 376 Target range: 51840 -> 52349 293 : ThrMetGluSerPheIlePheCysPheSerGlyGluTyrLeuSerSerLysSerLysMet : 312 !.!:!:.!.!!!|||||| !!! ::::::...::: ::!||| AsnValAsnThrPheIleAlaSerCysHis***LysPhePheThrPheGlnSerValGlu 51841 : AATGTTAATACTTTTATTGCAAGTTgtcattaaaaattcttcacttttcaGAGCGTTGAA : 51898 313 : IleGlyAspAlaAlaTyrGluSerLeuTrpTyrValLeuLysProGluAspCysArgIle : 332 |||!.!:!!|||||||||!!:||| !|||||| !|||...|||:!!:!!...!:!:!: IleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLysAsnAlaLysLeu 51899 : ATAGCTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTG : 51958 333 : LeuLeuPheValIleMetArgSerGlnArgArgLeuThrIleThrAlaGlyGlnPheMet : 352 ||||||.!!:!!!!: |||:!!::! !! !||| !||||||||||||::!||| LeuLeuIleIleMetArgArgAlaArgLeuProLeuGlnIleThrAlaGlyArgPheAla 51959 : CTACTAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCAGGTAGATTTGCT : 52018 353 : AspLeuSerLeuGluGlyPheAlaAsn >>>> Target Intron 1 >>>> SerL : 363 !!!!!!!||| ! !!:!:!!.!. 251 bp ! !| ThrPheThrLeuMetLeuTyrSerGln++ ++IleL 52019 : ACTTTCACTCTGATGCTGTATTCACAGgt.........................agATTT : 52302 364 : euLysAlaSerAla<-><->SerTyrIleSerValLeuTyrAlaMet : 376 |||||.!!|||!.! .!!|||:!!|||||||||||||||||| euLysThrSerValGlyLysGlyTyrValSerValLeuTyrAlaMet 52303 : TAAAAACCTCGGTGGGAAAAGGTTATGTTTCTGTTCTATACGCAATG : 52349 vulgar: CbirOr120 292 376 . KQ414804.1 51840 52349 + 125 M 69 207 5 0 2 I 0 247 3 0 2 M 6 18 G 0 6 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51841 52349 125 + . gene_id 1 ; sequence CbirOr120 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51841 52047 . + . KQ414804.1 exonerate:protein2genome:local exon 51841 52047 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 52048 52049 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 52048 52298 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 52297 52298 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 52299 52349 . + . KQ414804.1 exonerate:protein2genome:local exon 52299 52349 . + . insertions 6 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51841 52349 125 + . alignment_id 1 ; Query CbirOr120 ; Align 51841 293 207 ; Align 52299 362 18 ; Align 52323 368 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr124 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 319 -> 392 Target range: 51873 -> 52349 320 : GluPheLeuSerAlaLysSerLysSerIleGlyGluAlaIleTyrGlySerLeuTrpTyr : 339 :::|||...::: ::!||| ..!|||!.!.!.||| !|||! !||| !|||||| LysPhePheThrPheGlnSerValGluIleAlaAsnAlaAlaTyrAspSerGluTrpTyr 51874 : aaattcttcacttttcaGAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAATGGTAC : 51931 340 : AsnLeuSerProSerAspThrArgIleLeuLysPheIleMetLeuArgCysGlnLysArg : 359 ||||||||||||!.!:!!.!!!:!:!:||| !.!!||||||! !|||..!::! !! ! AsnLeuSerProLysAsnAlaLysLeuLeuLeuIleIleMetArgArgAlaArgLeuPro 51932 : AATTTGTCTCCGAAAAATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGTTACCT : 51991 360 : LeuThrIleThrAlaGlyGlyValIleAspLeuThrLeuGluGlyPheThrSer >>>> : 378 ||| !|||||||||||| !! !! ! !!!!|||||| ! !!:!:!!..! LeuGlnIleThrAlaGlyArgPheAlaThrPheThrLeuMetLeuTyrSerGln++ 51992 : CTACAAATCACTGCAGGTAGATTTGCTACTTTCACTCTGATGCTGTATTCACAGgt.... : 52050 379 : Target Intron 1 >>>> IleMetLysAlaSerVal<-><->SerTyrValSerV : 388 251 bp |||:!:|||.!!|||||| .!!|||||||||| ++IleLeuLysThrSerValGlyLysGlyTyrValSerV 52051 : .....................agATTTTAAAAACCTCGGTGGGAAAAGGTTATGTTTCTG : 52335 389 : alLeuAsnAlaMet : 392 ||||| !!|||||| alLeuTyrAlaMet 52336 : TTCTATACGCAATG : 52349 vulgar: CbirOr124 319 392 . KQ414804.1 51873 52349 + 122 M 58 174 5 0 2 I 0 247 3 0 2 M 6 18 G 0 6 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51874 52349 122 + . gene_id 1 ; sequence CbirOr124 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51874 52047 . + . KQ414804.1 exonerate:protein2genome:local exon 51874 52047 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 52048 52049 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 52048 52298 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 52297 52298 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 52299 52349 . + . KQ414804.1 exonerate:protein2genome:local exon 52299 52349 . + . insertions 6 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51874 52349 122 + . alignment_id 1 ; Query CbirOr124 ; Align 51874 320 174 ; Align 52299 378 18 ; Align 52323 384 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr124 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 324 -> 385 Target range: 34381 -> 34564 325 : LysSerLysSerIleGlyGluAlaIleTyrGlySerLeuTrpTyrAsnLeuSerProSer : 344 :!!|||!:!..!!!:.!!.!.:!! !|||! !||| !|||||||||:!!|||||| !! GlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProPro 34382 : CAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCA : 34439 345 : AspThrArgIleLeuLysPheIleMetLeuArgCysGlnLysArgLeuThrIleThrAla : 364 !!:.!!!:! !||| !|||||||||! !||| ! :::! !||| !:!:|||||| GluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAla 34440 : GAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCA : 34499 365 : GlyGlyValIleAspLeuThrLeuGluGlyPheThrSerIleMetLysAlaSerValSer : 384 ||| ! !!! ! !!!!:!!:!!||| !|||!:!!!!:!!! :::::: GlyLysPheSerThrPheSerMetGluMetPheSerThrValSerProIleAsnIleHis 34500 : GGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTGTAAGCccgataaatattcat : 34559 385 : Tyr : 385 ::: Phe 34560 : ttt : 34564 vulgar: CbirOr124 324 385 . KQ414804.1 34381 34564 + 102 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34382 34564 102 + . gene_id 2 ; sequence CbirOr124 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 34382 34564 . + . KQ414804.1 exonerate:protein2genome:local exon 34382 34564 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34382 34564 102 + . alignment_id 2 ; Query CbirOr124 ; Align 34382 325 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr122 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 327 -> 382 Target range: 39965 -> 40130 328 : SerLysSerIleSerAspAlaAlaTyrGluCysPheTrpTyrAspLeuThrProSerGlu : 347 |||! .!!|||.!!.!.:!!||||||!!:||| !|||||||||||| !!|||!.!.!. SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 348 : SerArgIleLeuMetPheLeuMetLeuArgAlaGlnLysArgLeuThrIleThrAlaGly : 367 :!! ! |||:!:.!!:!!!!:! !||||||||| ! !!!! !|||||||||||| AlaValSerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGly 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGA : 40083 368 : LysIleThrAspLeuSerLeuGluGlyPheThrThrIleMetLys : 382 |||.!!!:! !!!!||||||||| !|||!.!.!!:!:! ::! LysPheSerProPheSerLeuGluLeuPheAsnAlaValSerArg 40084 : AAATTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTGTGAGTCGA : 40130 vulgar: CbirOr122 327 382 . KQ414804.1 39965 40130 + 116 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40130 116 + . gene_id 1 ; sequence CbirOr122 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39966 40130 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40130 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39966 40130 116 + . alignment_id 1 ; Query CbirOr122 ; Align 39966 328 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr132 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 318 -> 370 Target range: 301880 -> 302036 319 : LysMetIleGlyAsnAlaAlaTyrAsnAlaLeuTrpTyrAspIleProThrLysGlnS : 338 !.....||||||:::|||:!!|||.!. ! !||||||:!!:!!|||.!!|||::!: SerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgA 301881 : AGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAG : 301938 339 : erArgIleValSerPheIleIleLeuArgSerGlnLysLeuLeuThrIleThrSerGl : 357 !! ! !:!!! !.!.:!!! !:!!! !|||||| ! ! !! !! !:!!|||:!!|| laTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGl 301939 : CATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGG : 301995 358 : yLysIleMetAspLeuSerLeuGluArgPheThrSerVal : 370 |||||||!!:||||||||||||.!.! !|||!:!|||||| yLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301996 : GAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: CbirOr132 318 370 . KQ414889.1 301880 302036 + 101 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301881 302036 101 + . gene_id 1 ; sequence CbirOr132 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301881 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301881 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301881 302036 101 + . alignment_id 1 ; Query CbirOr132 ; Align 301881 319 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr123 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 288 -> 379 Target range: 280109 -> 280456 289 : AlaThrAlaSerIleLysSerValSerPheTyrIleAlaIleThrLeuGluValPheI : 308 |||! !!.!!!!.!!! !! !:!!! !||| !|||:!!:!!|||!!!.!.||||||| AlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerLeuThrPheAsnValPheI 280110 : GCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCA : 280167 309 : leLeuCysPheAlaGlyGluPheLeuSerAlaLys >>>> Target Intron 1 : 320 ||||||||!:! !||||||.!!||||||! !::: 74 bp leLeuCysTyrIleGlyGluIleLeuSerGluGln++ 280168 : TACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt..................... : 280205 321 : >>>> SerLysSerIleSerAspAlaValTyrGluSerLeuTrpTyrAspMetProP : 337 !!! !!.!:!!.!!! :!!..!||| !! ! !|||||| !:!!||| ++CysLeuLysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProG 280206 : ....agTGCTTAAAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAG : 280328 338 : roThrAspSerArgIleLeuLeuPheIleIleIleArgSerGlnLysArgLeuThrIl : 356 !! ! ! :!!!:! !|||:!!.!.|||.!! ! !|||.!.... !:!!! !:! lyLysLysAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLe 280329 : GGAAGAAAGCACAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATT : 280385 357 : eThrAlaGlyLysValValAspLeuThrLeuGluGlyPheThrSerIleMetLysAla : 375 !||||||||||||:!!:!!||||||:!!|||....!!||| !|||:!:! ! ! uThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIle 280386 : AACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATA : 280442 376 : SerAlaSerTyr : 379 !:! !|||||| AsnLeuSerTyr 280443 : AATTTATCCTAT : 280456 vulgar: CbirOr123 288 379 . KQ414889.1 280109 280456 + 139 M 31 93 5 0 2 I 0 70 3 0 2 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280110 280456 139 + . gene_id 1 ; sequence CbirOr123 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280110 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280110 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280456 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280110 280456 139 + . alignment_id 1 ; Query CbirOr123 ; Align 280110 289 93 ; Align 280277 320 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr123 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 299 -> 383 Target range: 305151 -> 305816 300 : IleAlaIleThrLeuGluValPheIleLeuCysPheAlaGlyGluPheLeuSerAlaL : 319 |||:!!:!!|||!!!.!.:!!||||||||||||!:! !||||||.!!|||! !! !| IleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuMetGluL 305152 : ATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTTATGGAAA : 305209 320 : ys >>>> Target Intron 1 >>>> SerLysSerIleSerAspAlaValTyr : 328 || 413 bp |||!..|||:!!.!! :!! !!:! ys++ ++SerSerSerValGlyLeuSerCysPhe 305210 : AGgt.........................agAGCAGTAGCGTTGGATTATCCTGTTTT : 305649 329 : GluSerLeuTrpTyrAspMetProProThrAspSerArgIleLeuLeuPheIleIleI : 348 !! ! !|||||| !!:!:||| !!! ! ! !!.! !|||:!!!!.|||||| MetIleSerTrpTyrHisLeuProThrLysThrIleHisGlyLeuIleLeuIleIleA 305650 : ATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGGTCTTATTTTAATCATTG : 305709 349 : leArgSerGlnLysArgLeuThrIleThrAlaGlyLysValValAspLeuThrLeuGl : 367 !! !|||...!!.! ! !! !|||!:!|||||||||||||||||||||:!!|||.. laMetSerSerAsnProAlaLysIleSerAlaGlyLysValValAspLeuSerLeuSe 305710 : CCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTAGTTGATTTATCTTTATC : 305766 368 : uGlyPheThrSerIleMetLysAlaSerAlaSerTyrValSerValLeu : 383 . !||| !!:!:!:! ! !... ||| :::|||:::::: rThrPheGlyAsnValSerTyrTyrGlnTyrSerAsnIleSerIleVal 305767 : CACATTTGGAAACGTGAGTTACTATcaatattccaatatttcaattgtt : 305816 vulgar: CbirOr123 299 383 . KQ414889.1 305151 305816 + 139 M 20 60 5 0 2 I 0 409 3 0 2 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305152 305816 139 + . gene_id 2 ; sequence CbirOr123 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305152 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305152 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305816 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305816 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305152 305816 139 + . alignment_id 2 ; Query CbirOr123 ; Align 305152 300 60 ; Align 305625 320 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr126 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 311 -> 363 Target range: 301880 -> 302036 312 : LysSerIleGlyAspAlaAlaTyrGluThrLeuTrpTyrAspLeuSerThrLysGluC : 331 !....!||||||...|||:!!||||||! ! !||||||:!!||| !!.!!|||..!. SerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgA 301881 : AGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAG : 301938 332 : ysArgIleLeuLeuLeuIleIleIleArgSerGlnLysArgLeuThrIleThrAlaGl : 350 .. ! !|||:!!|||:!!! !:!:! !|||||| ! ! !! !! !:!!|||||||| laTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGl 301939 : CATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGG : 301995 351 : yLysValMetAspLeuThrLeuGluGlyPheThrSerVal : 363 ||||:!!!!:||||||:!!|||.!. !|||!:!|||||| yLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301996 : GAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: CbirOr126 311 363 . KQ414889.1 301880 302036 + 109 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301881 302036 109 + . gene_id 1 ; sequence CbirOr126 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301881 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301881 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301881 302036 109 + . alignment_id 1 ; Query CbirOr126 ; Align 301881 312 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr126 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 308 -> 374 Target range: 305618 -> 305816 309 : SerLysSerLysSerIleGlyAspAlaAlaTyrGluThrLeuTrpTyrAspLeuSerT : 328 ||| !!|||!..|||:!!||| :!!..!!:! !! ! !|||||| !!||| !!| Ser***SerSerSerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProT 305619 : TCGTAGAGCAGTAGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGA : 305676 329 : hrLysGluCysArgIleLeuLeuLeuIleIleIleArgSerGlnLysArgLeuThrIl : 347 ||||| ! !.! !|||:!!||||||||| !! !|||...!!.! ! !! !|| hrLysThrIleHisGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIl 305677 : CTAAGACGATACATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAAT : 305733 348 : eThrAlaGlyLysValMetAspLeuThrLeuGluGlyPheThrSerValMetLysAla : 366 |!:!||||||||||||:!:||||||:!!|||... !||| !!:!|||! ! ! eSerAlaGlyLysValValAspLeuSerLeuSerThrPheGlyAsnValSerTyrTyr 305734 : CAGTGCTGGTAAAGTAGTTGATTTATCTTTATCCACATTTGGAAACGTGAGTTACTAT : 305790 367 : SerAlaSerTyrIleSerValLeu : 374 ... ||| ||||||:::::: GlnTyrSerAsnIleSerIleVal 305791 : caatattccaatatttcaattgtt : 305816 vulgar: CbirOr126 308 374 . KQ414889.1 305618 305816 + 106 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305619 305816 106 + . gene_id 2 ; sequence CbirOr126 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305619 305816 . + . KQ414889.1 exonerate:protein2genome:local exon 305619 305816 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305619 305816 106 + . alignment_id 2 ; Query CbirOr126 ; Align 305619 309 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr126 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 312 -> 370 Target range: 280282 -> 280456 313 : SerIleGlyAspAlaAlaTyrGluThrLeuTrpTyrAspLeuSerThrLysGluCysA : 332 !.!:!!|||! :!!.!!||| !! ! !|||||| !||| !! !|||:!!...! LysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaG 280283 : AAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCAC : 280340 333 : rgIleLeuLeuLeuIleIleIleArgSerGlnLysArgLeuThrIleThrAlaGlyLy : 351 :! !|||:!!||||||.!! ! !|||.!.... !:!!! !:!!||||||||||| lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 280341 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 280397 352 : sValMetAspLeuThrLeuGluGlyPheThrSerValMetLysAlaSerAlaSerTyr : 370 |:!!!!:||||||:!!|||....!!||| !||||||! ! !!:! !|||||| sIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 280398 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 280454 vulgar: CbirOr126 312 370 . KQ414889.1 280282 280456 + 101 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280283 280456 101 + . gene_id 3 ; sequence CbirOr126 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280283 280456 . + . KQ414889.1 exonerate:protein2genome:local exon 280283 280456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280283 280456 101 + . alignment_id 3 ; Query CbirOr126 ; Align 280283 313 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr122 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 307 -> 383 Target range: 291419 -> 292560 308 : ValAlaIleAlaLeuGluAlaPheValPheCysTyrAlaGlyGluTyrLeuSerAlaL : 327 ..!:!!.!!.!!!!!.!. !.!.:!!|||||||||!.!|||||| !||| !!.!: ThrSerPheThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyG 291420 : ACTTCTTTCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGAC : 291477 328 : ys >>>> Target Intron 1 >>>> SerLysSerIleSerAspAlaAlaTyr : 336 !! 913 bp .!!!....!|||:!! !!|||:!!||| ln++ ++GlySerGluIleAlaHisAlaSerTyr 291478 : AGgt.........................agGGTAGTGAAATCGCGCACGCTTCCTAC : 292417 337 : GluCysPheTrpTyrAspLeuThrProSerGluSerArgIleLeuMetPheLeuMetL : 356 !!: ||||||:!!||| !! ! !!:!!:!!||| !:!!:!:.!.:!!:!: AspThrGluTrpTyrAsnLeuProArgArgLysAlaArgAspIleValLeuValLeuA 292418 : GATACAGAATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTG : 292477 357 : euArgAlaGlnLysArgLeuThrIleThrAlaGlyLysIleThrAspLeuSerLeuGl : 375 !! !.!!:!! ! ! !:!!! !:!!||||||||||||||| !! !|||||||||.! laIleThrLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAs 292478 : CCATAACGAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAA : 292534 376 : uGlyPheThrThrIleMetLysSer : 383 . !||| !.!!:!! :!!||| nThrPheGlyAlaValArgGluSer 292535 : CACTTTTGGCGCTGTACGTGAATCA : 292560 vulgar: CbirOr122 307 383 . KQ414889.1 291419 292560 + 107 M 20 60 5 0 2 I 0 909 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291420 292560 107 + . gene_id 1 ; sequence CbirOr122 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291420 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291420 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292560 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292560 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291420 292560 107 + . alignment_id 1 ; Query CbirOr122 ; Align 291420 308 60 ; Align 292393 328 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr131 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 312 -> 362 Target range: 301886 -> 302036 313 : IleGlyAspAlaAlaTyrGluSerLeuTrpTyrAsnArgThrProAlaGlnAsnArgA : 332 ||||||...|||:!!||||||! ! !||||||||| ! !! !! !::! !| IleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrA 301887 : ATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACG : 301944 333 : spLeuLeuLeuMetIleMetArgSerGlnLysHisLeuSerLeuThrValGlyLysVa : 351 |||||:!!|||:!:! !:!!! !|||||| ! ! ! !!.!||||||!.!||||||:! spLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGlyLysIl 301945 : ATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAAT : 302001 352 : lValAspLeuSerLeuGlnGlnPheAlaSerVal : 362 !:!!||||||||||||.!. !|||::!|||||| eIleAspLeuSerLeuAsnThrPheSerSerVal 302002 : AATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: CbirOr131 312 362 . KQ414889.1 301886 302036 + 111 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301887 302036 111 + . gene_id 1 ; sequence CbirOr131 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301887 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301887 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301887 302036 111 + . alignment_id 1 ; Query CbirOr131 ; Align 301887 313 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr131 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 305 -> 366 Target range: 297632 -> 297815 306 : LeuSerThrLysSerLysThrIleGlyAspAlaAlaTyrGluSerLeuTrpTyrAsnA : 325 :!!||| !:!!:!!:!!! !.!!|||:!!|||||||||.!.! ! !||||||||| ValSerCysGlnAlaGluLysPheGlyAsnAlaAlaTyrAsnIleGluTrpTyrAsnL 297633 : GTTTCTTGTCAGGCTGAAAAATTCGGCAATGCAGCTTATAACATCGAATGGTACAACT : 297690 326 : rgThrProAlaGlnAsnArgAspLeuLeuLeuMetIleMetArgSerGlnLysHisLe : 344 ! !!||| !::! !! !||||||:!!||||||||| ! !:!!:!! ! ! euProProAsnArgAlaLeuAspLeuValLeuMetIleGlyIleAlaLysPheProPr 297691 : TACCGCCAAACAGGGCTCTCGATCTGGTGTTAATGATCGGTATAGCAAAATTTCCACC : 297747 345 : uSerLeuThrValGlyLysValValAspLeuSerLeuGlnGlnPheAlaSerValVal : 363 !!!!|||||| ||||||::: |||:::|||:!!.!. !|||::!:!!||| ! oArgLeuThrGlyGlyLysIlePheAspIleSerIleAsnThrPheSerAlaValArg 297748 : GAGGCTCACAggtggaaaaatattcgatatatCGATAAACACGTTCAGTGCCGTACGT : 297804 364 : LysValSer : 366 !:: ||| ArgGlnSer 297805 : Agacaaagt : 297815 vulgar: CbirOr131 305 366 . KQ414889.1 297632 297815 + 102 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297633 297815 102 + . gene_id 2 ; sequence CbirOr131 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297633 297815 . + . KQ414889.1 exonerate:protein2genome:local exon 297633 297815 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297633 297815 102 + . alignment_id 2 ; Query CbirOr131 ; Align 297633 306 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr120 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 186 -> 267 Target range: 1681989 -> 1682241 187 : LeuAspAlaLeuIleValThrLeuMetLeuHisIleGlyGlyGlnIleAspIleIl : 205 !!!||| !!!!:!: !! !|||! :!!|||:!!|||||||||.!! ! |||:! PheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLysIleLe 1681990 : TTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAGATTTT : 1682044 206 : eGlnGluGlnLeuGluLysIleCysSerGluAspSerLysProHisLeuSerLysA : 224 !|||.!.:!!|||:!!! !:!!! |||||| ! |||... ... ||| ! uGlnAsnLysLeuGlnThrValLeuSerGluLysSerSerLysGluLysSerAlaG 1682045 : ACAAAACAAACTCCAAACAGTATTGAGTGAGAAatcttcgaaagaaaaatcagctG : 1682101 225 : spIleValLysSerLeu<-><-><->IleThrLysHisHisLysIleIleAlaPhe : 239 :!: !|||..!!!! :!! ! ! |||||| !:!!:!!:!!::: lyLeuTyrLysGluPheLysGluCysValGlnTyrHisHisLeuLeuLeuSerTyr 1682102 : GACTGTATAAAGAGTTCAAGGAGTGCGTACAGTATCATCATTTGCTTCTTTCGtac : 1682155 240 : SerAspLysIleGluSerLeuPheThrGlnIleAlaLeuMetGlnPheLeuSerAs : 258 :::|||:::||| :!!||| ! !:!!!!:|||!!.||| !:: ValGluLysLeuGluTyrValPheCysValProLeuMetIleGlnLeuLeuValSe 1682156 : gtggaaaaattggaatacgTATTTTGTGTCCCGTTGATGATTCAATTGCTGGTGTC : 1682212 259 : nThrMetIleIleCysCysIleGlyPhe : 267 !!:!!!::!!:!:||| ! |||||| rSerIleValLeuCysValSerGlyPhe 1682213 : TAGCATAGTTCTGTGCGTCTCGGGGTTT : 1682241 vulgar: CbirOr120 186 267 . KQ414915.1 1681989 1682241 + 106 M 43 129 G 0 9 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681990 1682241 106 + . gene_id 1 ; sequence CbirOr120 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1681990 1682241 . + . KQ414915.1 exonerate:protein2genome:local exon 1681990 1682241 . + . insertions 9 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681990 1682241 106 + . alignment_id 1 ; Query CbirOr120 ; Align 1681990 187 129 ; Align 1682128 230 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr124 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 323 -> 392 Target range: 3143 -> 3428 324 : AlaLysSerLysSerIleGlyGluAlaIleTyrGlySerLeuTrpTyrAsnLeuSerProSe : 344 ...||| |||! !:!! ! :!!! !|||.!!:!!|||||||||||| !..! !!! ValLysIleLysIleValHisPheSerArgTyrSerAlaLeuTrpTyrAsnSerAspLysAr 3144 : gtgaaaatcaAAATTGTCCATTTTTCTAGATACAGCGCTTTGTGGTATAACAGCGACAAGAG : 3204 345 : rAspThrArgIleLeuLysPheIleMetLeuArgCysGlnLysArgLeuThrIleThrAlaG : 365 ! ! !:!:!!! !!!. :!: !!.!|||! !... !! ! !|||||||||| gThrGlnSerLeuPheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaG 3205 : AACGCAATCGTTGTTTGTATTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCG : 3267 366 : lyGlyValIleAspLeuThrLeuGluGlyPheThrSer >>>> Target Intron 1 > : 378 |||||:!!||| :!!!.!|||:!!.!!|||:!!..! 78 bp lyGlyLeuIleThrMetAsnLeuGlnSerPheSerGlu++ 3268 : GTGGACTAATTACAATGAACTTGCAAAGTTTCTCAGAGgt...................... : 3308 379 : >>> IleMetLysAlaSerValSerTyrValSerValLeuAsnAlaMet : 392 |||:!:|||.!!|||||||||||| !! !||||||!!.:!!:!: ++IleValLysThrSerValSerTyrTyrMetValLeuLysSerVal 3309 : ...agATTGTAAAGACGTCTGTCTCGTACTACATGGTACTGAAATCCGTA : 3428 vulgar: CbirOr124 323 392 . KQ414921.1 3143 3428 + 110 M 54 162 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 3144 3428 110 + . gene_id 1 ; sequence CbirOr124 ; gene_orientation + KQ414921.1 exonerate:protein2genome:local cds 3144 3305 . + . KQ414921.1 exonerate:protein2genome:local exon 3144 3305 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 3306 3307 . + . intron_id 1 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 3306 3383 . + . intron_id 1 KQ414921.1 exonerate:protein2genome:local splice3 3382 3383 . + . intron_id 0 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 3384 3428 . + . KQ414921.1 exonerate:protein2genome:local exon 3384 3428 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 3144 3428 110 + . alignment_id 1 ; Query CbirOr124 ; Align 3144 324 162 ; Align 3384 378 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr130 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 293 -> 395 Target range: 807281 -> 807587 294 : AspSerGluGlySerThrMetLeuValLysSerLeuPhePheTyrValValIleThrL : 313 ..!!!!:!!! !!:!..! !:!!!:!|||!!! !!.!. |||..!:!: !: SerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuMetValThrLeuLeuI 807282 : AGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGA : 807339 314 : euGluAlaPheIlePheCysTyrAlaGlyGluTyrLeuSerAlaLysSerArgMetIl : 332 !!:!! !!:!:!!!:!..!|||||||||.!. |||..!:!!::!!!!..! || leGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluIl 807340 : TTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAAT : 807396 333 : eGlyAspAlaAlaTyrGluAlaLysTrpTyrAsnSerSerProLysGlnSerArgVal : 351 |!.!.!.|||||||||!!::!! ||||||..!!!! ! ! ! !:!!|||! ! eAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAsp 807397 : TGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGAT : 807453 352 : LeuLeuLeuLeuIleLeuArgSerGlnArgLysLeuThrIleThrIleGlyLysPheM : 371 |||||||||:!!|||! !|||.!!.!. ! ! ! !|||||| !|||||||||: LeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheV 807454 : CTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCG : 807513 372 : etAspLeuSerLeuGluArgPheThrThrIleIleLysAlaSerAlaSerTyrValSe : 390 !: :!!!:!||| ! !|||! ! !|||:!:|||||||||!.!||||||:!!|| alProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSe 807514 : TCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTC : 807570 391 : rValLeuHisAlaMet : 395 ||||:!! ! !.!||| rValMetLysValMet 807571 : TGTAATGAAGGTAATG : 807587 vulgar: CbirOr130 293 395 . KQ414940.1 807281 807587 + 170 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807282 807587 170 + . gene_id 1 ; sequence CbirOr130 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807282 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807282 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807282 807587 170 + . alignment_id 1 ; Query CbirOr130 ; Align 807282 294 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr125 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 286 -> 380 Target range: 807305 -> 807587 287 : IleGlnPheIleIleProSerValAlaValThrIleGluAlaPheValPheCysPheA : 306 :!:::! !.!!:!!! !! !|||.!!:!! !|||:!! !!:!:!!!:!..!!:!| LeuArgSerPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrA 807306 : TTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACG : 807363 307 : laGlyGluTyrLeuSerThrLysSerLysSerIleGlyAspAlaAlaTyrGluAlaVa : 325 |||||.!. |||..!:!!::!!!!:!!..!|||!.!.!.|||||||||!!::!!:! laGlyAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLe 807364 : CGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCT : 807420 326 : lTrpTyrAspLeuSerThrSerGluCysArgValLeuLeuPheLeuIleLeuArgSer : 344 !|||||| !! ! ! ! !! !..!|||! !||||||!!.:!!|||! !|||.!! uTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGly 807421 : TTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGA : 807477 345 : GlnLysArgLeuThrIleThrAlaGlyLysValThrAspLeuThrLeuGluAlaPheT : 364 .!...!! !! ! !||||||||||||||| !!..! :!!!.!||| .!!|||! AsnSerProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheL 807478 : AATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCA : 807537 365 : hrThrValMetLysAlaSerAlaSerTyrIleSerValLeuHisAlaMet : 380 ! !:!!:!!|||||||||!.!||||||:!:||||||:!! ! !.!||| ysGluIleLeuLysAlaSerGlySerTyrLeuSerValMetLysValMet 807538 : AGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: CbirOr125 286 380 . KQ414940.1 807305 807587 + 157 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807306 807587 157 + . gene_id 1 ; sequence CbirOr125 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807306 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807306 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807306 807587 157 + . alignment_id 1 ; Query CbirOr125 ; Align 807306 287 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr131 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 265 -> 376 Target range: 807257 -> 807587 266 : GlyPheLeuIleValIleSerIleGlyValSerGlyGlySerThrMetLeuIleLysS : 285 ||||||:!!.!!:!!:!!:!!:!:.!!..!!.! ! !!:!..! !:!:!:!| GlyPheValPheLeuValAlaLeuSerThrLys---AspAsnValAlaAlaLeuArgS 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAG---GACAACGTTGCAGCATTGAGGA : 807312 286 : erValLeuPheTyrLeuValIleLeuMetGluAlaPheIleSerCysPheLeuGlyGl : 304 || !!:!!.!. :!!..!:!:|||!!::!! !!:!:!!! !..!!:! !|||.! erPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807313 : GCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 305 : uTyrLeuSerThrLysSerLysThrIleGlyAspAlaAlaTyrGluSerLeuTrpTyr : 323 . |||..!:!!::!!!!:!! !|||!.!.!.|||||||||!!:|||||||||||| nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 324 : AsnArgThrProAlaGlnAsnArgAspLeuLeuLeuMetIleMetArgSerGlnLysH : 343 ..! !! ! ! ! ! !|||||||||||||||!!:||| |||.!!.!...!! ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 344 : isLeuSerLeuThrValGlyLysValValAspLeuSerLeuGlnGlnPheAlaSerVa : 362 !! ! !!:!!|||!.!|||||| !!||| :!!!:!||| ||| !..!:! roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 363 : lValLysValSerAlaSerTyrValSerValLeuHisAlaMet : 376 !:!!|||!.!|||!.!||||||:!!||||||:!! ! !.!||| eLeuLysAlaSerGlySerTyrLeuSerValMetLysValMet 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: CbirOr131 265 376 . KQ414940.1 807257 807587 + 162 M 11 33 G 1 0 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807587 162 + . gene_id 1 ; sequence CbirOr131 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807587 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807258 807587 162 + . alignment_id 1 ; Query CbirOr131 ; Align 807258 266 33 ; Align 807291 278 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr127 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 275 -> 386 Target range: 807257 -> 807587 276 : GlyPheIleIleMetIleSerValHisAsnAspThrSerValIleValLeuValLysT : 295 ||||||:!!.!!:!!:!!:!!:!! !!.. ! !!:!||| !!.!||| !!.. GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 296 : hrIlePheAlaTyrThrAlaIleMetIleGluAlaPheIleIleCysPheAlaGlyGl : 314 !:!!.!. ! ||| :!::!!|||:!! !!:!:!! !..!!:!||||||.! heValLeuMetValThr---LeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807316 : TCGTTCTGATGGTGACT---TTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 315 : uTyrLeuCysLeuLysSerLysSerIleAlaAspAlaAlaTyrGluSerLeuTrpTyr : 333 . ||| ! !::!!!!:!!..!||||||.!.|||||||||!!:|||||||||||| nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 334 : AspIleProProAspHisValLysIleIleLeuPheMetIleMetArgSerGlnArgG : 353 ! !! ! ! !! !.!!:! !:!!|||!!.!!:||| |||.!!.!. ! ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 354 : lyLeuAlaIleThrAlaGlyArgIleThrAsnLeuSerLeuGluAlaPheAlaSerIl : 372 !! ! !||||||||||||!:!.!!..! :!!!:!||| .!!||| !..!|| roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 373 : eMetLysAlaSerValSerTyrIleSerValLeuHisAlaMet : 386 |:!!|||||||||! !||||||:!:||||||:!! ! !.!||| eLeuLysAlaSerGlySerTyrLeuSerValMetLysValMet 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: CbirOr127 275 386 . KQ414940.1 807257 807587 + 156 M 25 75 G 1 0 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807587 156 + . gene_id 1 ; sequence CbirOr127 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807587 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807258 807587 156 + . alignment_id 1 ; Query CbirOr127 ; Align 807258 276 75 ; Align 807333 302 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr129PSE(F) Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 280 -> 378 Target range: 807293 -> 807587 281 : ThrIleIleLeuLeuLysSerAlaIlePheTyrValAlaValThrLeuGluAlaPheI : 300 !.!:!! ! !|||!:!||| !:!!.!. |||.!!:!! !:!!:!! !!:!: AsnValAlaAlaLeuArgSerPheValLeuMetValThrLeuLeuIleGlnLeuTyrL 807294 : AACGTTGCAGCATTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACC : 807351 301 : lePheCysPheAlaGlyGluTyrLeuSerAlaLysSerLysSerIleGlyAspAlaAl : 319 !!!:!..!!:!||||||.!. |||..!:!!::!!!!:!!..!|||!.!.!.||||| euTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAl 807352 : TTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGC : 807408 320 : aTyrGluSerLeuTrpTyrAsnMetThrProAspLysCysArgIleIleLeuPheVal : 338 ||||!!:||||||||||||..! ! ! !! !..!||| !:!!|||!!.:!! aTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIle 807409 : CTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATC : 807465 339 : IleLeuArgSerGlnLysArgLeuThrIleThrAlaGlyAsnValMetAspLeuSerL : 358 |||! !|||.!!.!...!! !! ! !||||||||||||!!. !!:!: :!!!:!| IleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheValProMetAsnL 807466 : ATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATC : 807525 359 : euGlnGlyPheThrThrValMetLysAlaSerAlaSerTyrIleSerMetLeuHisAl : 377 || !|||! ! !:!!:!!|||||||||!.!||||||:!:|||:!::!! ! !. euPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSerValMetLysVa 807526 : TTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGT : 807582 378 : aMet : 378 !||| lMet 807583 : AATG : 807587 vulgar: CbirOr129PSE(F) 280 378 . KQ414940.1 807293 807587 + 165 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807294 807587 165 + . gene_id 1 ; sequence CbirOr129PSE(F) ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807294 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807294 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807294 807587 165 + . alignment_id 1 ; Query CbirOr129PSE(F) ; Align 807294 281 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr133 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 168 Query range: 270 -> 381 Target range: 807257 -> 807587 271 : GlyPheIleIleValThrSerIleGlyThrThrAspGlyProAlaIleLeuValArgS : 290 ||||||:!!.!!:!!..!:!!:!:.!!|||! !|||..! !||| !||| |||| GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeu---ArgS 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTG---AGGA : 807312 291 : erValLeuPheTyrLeuValMetAsnLeuGluAlaPheIleTyrCysPheAlaGlyGl : 309 || !!:!!.!. :!!..!:!! :!!:!! !!:!:!!|||..!!:!||||||.! erPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807313 : GCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 310 : uTyrLeuSerAlaLysSerLysMetIleGlyAspAlaAlaTyrAsnSerLeuTrpTyr : 328 . |||..!:!!::!!!!:!! |||!.!.!.|||||||||:!!|||||||||||| nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 329 : AspValAlaThrLysLysAsnLeuIleIleLeuPheIleIleLeuArgSerGlnLysA : 348 ! ! ! ! ! ! ! ! !:!!|||!!.||||||! !|||.!!.!...!! ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 349 : rgLeuThrIleThrIleGlyLysValMetAspLeuSerLeuGluArgPheThrSerVa : 367 !! ! !|||||| !|||||| !!:!: :!!!:!||| ! !|||! !..!:! roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 368 : lValLysAlaSerAlaSerTyrIleSerValLeuLeuAlaMet : 381 !:!!|||||||||!.!||||||:!:||||||:!! !!.!||| eLeuLysAlaSerGlySerTyrLeuSerValMetLysValMet 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: CbirOr133 270 381 . KQ414940.1 807257 807587 + 168 M 17 51 G 1 0 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807587 168 + . gene_id 1 ; sequence CbirOr133 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807587 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807258 807587 168 + . alignment_id 1 ; Query CbirOr133 ; Align 807258 271 51 ; Align 807309 289 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr122 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 283 -> 391 Target range: 807257 -> 807578 284 : GlyPheLeuLeuValIleSerIleGlyThrGluGluGlyAlaThrValIleThrLysS : 303 ||||||:!!!!!:!!:!!:!!:!:.!!|||:!!!!:..!!.!.!!!.!:!: !:!| GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeu---ArgS 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTG---AGGA : 807312 304 : erLeuIlePheTyrValAlaIleAlaLeuGluAlaPheValPheCysTyrAlaGlyGl : 322 ||!!!:!!.!. |||.!!:!: !:!!:!! !!:!:!!!:!..!|||||||||.! erPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807313 : GCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 323 : uTyrLeuSerAlaLysSerLysSerIleSerAspAlaAlaTyrGluCysPheTrpTyr : 341 . |||..!:!!::!!!!:!!..!|||:!!.!.|||||||||!!:! !.!!|||||| nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 342 : AspLeuThrProSerGluSerArgIleLeuMetPheLeuMetLeuArgAlaGlnLysA : 361 !! ! ! ! !! !:!!||| !|||:!:!!.:!!!!:! !|||!.!.!...!! ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 362 : rgLeuThrIleThrAlaGlyLysIleThrAspLeuSerLeuGluGlyPheThrThrIl : 380 !! ! !|||||||||||||||.!!..! :!!!:!||| !|||! ! !|| roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 381 : eMetLysSerSerAlaSerTyrIleSerValLeu : 391 |:!!|||:!!|||!.!||||||:!:||||||:!! eLeuLysAlaSerGlySerTyrLeuSerValMet 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATG : 807578 vulgar: CbirOr122 283 391 . KQ414940.1 807257 807578 + 167 M 17 51 G 1 0 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807578 167 + . gene_id 1 ; sequence CbirOr122 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807578 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807258 807578 167 + . alignment_id 1 ; Query CbirOr122 ; Align 807258 284 51 ; Align 807309 302 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr126 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 283 -> 377 Target range: 807305 -> 807587 284 : IleGlnSerIleIleProTyrIleAlaValThrLeuGluAlaPheValPheCysPheA : 303 :!:::!|||.!!:!!! ! :!:.!!:!! !:!!:!! !!:!:!!!:!..!!:!| LeuArgSerPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrA 807306 : TTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACG : 807363 304 : laGlyGluTyrLeuSerSerLysSerLysSerIleGlyAspAlaAlaTyrGluThrLe : 322 |||||.!. |||..!|||::!!!!:!!..!|||!.!.!.|||||||||!!::!!|| laGlyAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLe 807364 : CGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCT : 807420 323 : uTrpTyrAspLeuSerThrLysGluCysArgIleLeuLeuLeuIleIleIleArgSer : 341 ||||||| !! ! ! ! ! ! !..!||| !||||||||||||||| !|||.!! uTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGly 807421 : TTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGA : 807477 342 : GlnLysArgLeuThrIleThrAlaGlyLysValMetAspLeuThrLeuGluGlyPheT : 361 .!...!! !! ! !||||||||||||||| !!:!: :!!!.!||| !|||! AsnSerProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheL 807478 : AATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCA : 807537 362 : hrSerValMetLysAlaSerAlaSerTyrIleSerValLeuHisValIle : 377 !..!:!!:!!|||||||||!.!||||||:!:||||||:!! ! |||!!: ysGluIleLeuLysAlaSerGlySerTyrLeuSerValMetLysValMet 807538 : AGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: CbirOr126 283 377 . KQ414940.1 807305 807587 + 172 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807306 807587 172 + . gene_id 1 ; sequence CbirOr126 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807306 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807306 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807306 807587 172 + . alignment_id 1 ; Query CbirOr126 ; Align 807306 284 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr123 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 187 Query range: 274 -> 386 Target range: 807254 -> 807587 275 : ThrGlyPheValIleIleIleThrIleGlyThrAsnGluGlyAlaThrAlaSerIleL : 294 ||||||||||||.!!:!::!!.!!:!:.!!|||!!.!!:..! ..!|||:!!:!:! ThrGlyPheValPheLeuValAlaLeuSerThrLysAspAsn---ValAlaAlaLeuA 807255 : ACAGGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAAC---GTTGCAGCATTGA : 807309 295 : ysSerValSerPheTyrIleAlaIleThrLeuGluValPheIleLeuCysPheAlaGl : 313 :!||| !! !.!. :!:.!!:!: !:!!:!!:!!!:!:!!! !..!!:!||||| rgSerPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGl 807310 : GGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGG : 807366 314 : yGluPheLeuSerAlaLysSerLysSerIleSerAspAlaValTyrGluSerLeuTrp : 332 |.!. |||..!:!!::!!!!:!!..!|||:!!.!.|||!.!|||!!:||||||||| yAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrp 807367 : CAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGG : 807423 333 : TyrAspMetProProThrAspSerArgIleLeuLeuPheIleIleIleArgSerGlnL : 352 ||| ! ! ! ! !! :!!||| !||||||!!.|||||| !|||.!!.!.. TyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnS 807424 : TACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATT : 807483 353 : ysArgLeuThrIleThrAlaGlyLysValValAspLeuThrLeuGluGlyPheThrSe : 371 .!! !! ! !||||||||||||||| !!||| :!!!.!||| !|||! !.. erProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGl 807484 : CGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGA : 807540 372 : rIleMetLysAlaSerAlaSerTyrValSerValLeuAsnAlaMet : 386 !|||:!!|||||||||!.!||||||:!!||||||:!!!!.!.!||| uIleLeuLysAlaSerGlySerTyrLeuSerValMetLysValMet 807541 : GATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: CbirOr123 274 386 . KQ414940.1 807254 807587 + 187 M 14 42 G 1 0 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807255 807587 187 + . gene_id 1 ; sequence CbirOr123 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807255 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807255 807587 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807255 807587 187 + . alignment_id 1 ; Query CbirOr123 ; Align 807255 275 42 ; Align 807297 290 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr132 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 273 -> 384 Target range: 807257 -> 807587 274 : GlyTyrValValAlaThrSerLeuAspThrProAsnAlaAlaAlaIleLeuMetLysS : 293 |||!:!||| !! !..!:!!|||..!||| !:!! !!.!||| !||| !:!| GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeu---ArgS 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTG---AGGA : 807312 294 : erLeuValPheTyrIleThrIleAsnLeuGluValPheIleTyrCysLeuSerGlyGl : 312 ||!!!|||.!. :!:|||:!: :!!:!!:!!!:!:!!|||..!! !:!!|||.! erPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807313 : GCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 313 : uTyrLeuSerAlaLysSerLysMetIleGlyAsnAlaAlaTyrAsnAlaLeuTrpTyr : 331 . |||..!:!!::!!!!:!! |||!.!.!.|||||||||:!!:!!||||||||| nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 332 : AspIleProThrLysGlnSerArgIleValSerPheIleIleLeuArgSerGlnLysL : 351 ! !! ! ! ! !:!!||| !:!! !!!.||||||! !|||.!!.!...!! ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 352 : euLeuThrIleThrSerGlyLysIleMetAspLeuSerLeuGluArgPheThrSerVa : 370 !! ! !||||||:!!||||||.!!:!: :!!!:!||| ! !|||! !..!:! roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 371 : lValLysAlaSerAlaSerTyrLeuSerMetLeuLeuAlaMet : 384 !:!!|||||||||!.!||||||||||||:!::!! !!.!||| eLeuLysAlaSerGlySerTyrLeuSerValMetLysValMet 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: CbirOr132 273 384 . KQ414940.1 807257 807587 + 164 M 17 51 G 1 0 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807587 164 + . gene_id 1 ; sequence CbirOr132 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807587 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807258 807587 164 + . alignment_id 1 ; Query CbirOr132 ; Align 807258 274 51 ; Align 807309 292 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr137 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 275 -> 383 Target range: 807257 -> 807578 276 : GlyPheValIleValMetSerMetHisSerProAspMetSerThrMetLeuValLysT : 295 |||||||||.!!:!!:!::!!:!! !!!! !||| !:!..! !:!!!:!! GlyPheValPheLeuValAlaLeuSerThrLysAsp---AsnValAlaAlaLeuArgS 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGAC---AACGTTGCAGCATTGAGGA : 807312 296 : hrLeuLeuPheTyrIleValMetAsnLeuGluAlaPheIlePheCysPheAlaGlyAs : 314 :!!!!:!!.!. :!:..!:!! :!!:!! !!:!:!!!:!..!!:!||||||:! erPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807313 : GCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 315 : pTyrLeuSerThrLysSerGlnHisIleAlaAspAlaAlaTyrArgSerLeuTrpTyr : 333 ! |||..!:!!::!!!!:!!.!.||||||.!.||||||||| !|||||||||||| nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 334 : AsnMetThrValAsnGluSerArgThrIleSerPheLeuIleIleArgSerGlnLysA : 353 ..! !! !:!!! !:!!||| !:!! !!!.:!!||| !|||.!!.!...!! ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 354 : rgLeuThrIleThrIleGlyLysIleMetAspLeuSerLeuGluArgPheThrSerVa : 372 !! ! !|||||| !||||||.!!:!: :!!!:!||| ! !|||! !..!:! roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 373 : lIleLysAlaSerAlaSerTyrIleSerValLeu : 383 !:!:|||||||||!.!||||||:!:||||||:!! eLeuLysAlaSerGlySerTyrLeuSerValMet 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATG : 807578 vulgar: CbirOr137 275 383 . KQ414940.1 807257 807578 + 164 M 12 36 G 1 0 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807578 164 + . gene_id 1 ; sequence CbirOr137 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807578 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807258 807578 164 + . alignment_id 1 ; Query CbirOr137 ; Align 807258 276 36 ; Align 807294 289 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr120 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 265 -> 376 Target range: 807257 -> 807587 266 : GlyPheLeuIleValThrSerLeuGlyThrAspThrGlyIleArgMetMetIleLysT : 285 ||||||:!!.!!:!!..!:!!|||.!!||| ! !..!:!! :!:!:!! GlyPheValPheLeuValAlaLeuSerThrLysAspAsnVal---AlaAlaLeuArgS 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTT---GCAGCATTGAGGA : 807312 286 : hrThrPhePheTyrIleAlaIleThrMetGluSerPheIlePheCysPheSerGlyGl : 304 :! ! !!.!. :!:.!!:!: !!!::!! !!:!:!!!:!..!!:!:!!|||.! erPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807313 : GCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 305 : uTyrLeuSerSerLysSerLysMetIleGlyAspAlaAlaTyrGluSerLeuTrpTyr : 323 . |||..!|||::!!!!:!! |||!.!.!.|||||||||!!:|||||||||||| nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 324 : ValLeuLysProGluAspCysArgIleLeuLeuPheValIleMetArgSerGlnArgA : 343 !! ! ! !.!.! ..!||| !||||||!!.:!!||| |||.!!.!. !! ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 344 : rgLeuThrIleThrAlaGlyGlnPheMetAspLeuSerLeuGluGlyPheAlaAsnSe : 362 !! ! !||||||||||||:!!|||:!: :!!!:!||| !||| !.!.! roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 363 : rLeuLysAlaSerAlaSerTyrIleSerValLeuTyrAlaMet : 376 !||||||||||||!.!||||||:!:||||||:!! ! !.!||| eLeuLysAlaSerGlySerTyrLeuSerValMetLysValMet 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: CbirOr120 265 376 . KQ414940.1 807257 807587 + 164 M 14 42 G 1 0 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807587 164 + . gene_id 1 ; sequence CbirOr120 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807587 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807258 807587 164 + . alignment_id 1 ; Query CbirOr120 ; Align 807258 266 42 ; Align 807300 281 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr129PSE(F) Target: LHQN01049708.1 Habropoda laboriosa contig49708, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 3 -> 83 Target range: 69 -> 309 4 : ThrSerIleSerThrSerValGluIleGlyLeuArgPheValGlyIleTrpProAspLeuSerH : 25 !.!!!!!!:||| !||||||:!!.!!||||||!.!||||||||||||||||||! ! !! AsnThrMetSerGlnSerValLysPheGlyLeuHisPheValGlyIleTrpProGlyThrProP 70 : AATACAATGAGCCAATCTGTTAAGTTTGGTCTACATTTTGTCGGTATTTGGCCAGGAACACCAT : 133 26 : isGlyThrLeuIleTrpLeuThrTyrMetThrSerValAlaIleValLeuTyrPheGlnTyrVa : 46 ! !!:!||| ! :!! !!:::!:! !:!!:!!|||:!!:!!! ! !!:!|||||| heProSerLeuHisLysIleGlyTrpValIleAlaMetAlaValLeuGlnThrTyrGlnTyrAr 134 : TCCCAAGTTTACATAAAATTGGTTGGGTCATAGCGATGGCTGTACTTCAAACTTATCAGTACAG : 196 47 : lTyrIlePheAsnHisPheAspValSerAsnIleSerAsnLeuIleAspAlaLeuSerIleThr : 67 !||||||.!!!..|||!:! ! !..!!:!:!!! ! ! !|||||| !|||||||||||| gTyrIleIleThrHisTyrLysSerAspSerLeuMetValThrIleAspAsnLeuSerIleThr 197 : ATACATCATTACGCATTATAAATCTGATAGTCTTATGGTCACAATAGATAATTTGAGCATCACC : 259 68 : LeuAlaTyrSerLeuGlyPheLeuLysLeuIleSerLeuTrpLeuAsn : 83 :!! !!!:!!!!||| ...:::||||||||| ||| !||| MetProPheThrLeuValLeuIleLysLeuIleIleThrTrpAlaAsn 260 : ATGCCATTCACTCTagtgttaattaaattaattattacttgGGCAAAT : 309 vulgar: CbirOr129PSE(F) 3 83 . LHQN01049708.1 69 309 + 151 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049708.1 exonerate:protein2genome:local gene 70 309 151 + . gene_id 1 ; sequence CbirOr129PSE(F) ; gene_orientation . LHQN01049708.1 exonerate:protein2genome:local cds 70 309 . + . LHQN01049708.1 exonerate:protein2genome:local exon 70 309 . + . insertions 0 ; deletions 0 LHQN01049708.1 exonerate:protein2genome:local similarity 70 309 151 + . alignment_id 1 ; Query CbirOr129PSE(F) ; Align 70 4 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr131 Target: LHQN01049708.1 Habropoda laboriosa contig49708, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 1 -> 75 Target range: 69 -> 294 2 : SerSerValCysValSerValGluTyrGlyLeuArgLeuValGlyIleTrpProGlyThrSerT : 23 !:!!!!:!! !! !||||||:!!!:!||||||!.!!!!||||||||||||||||||||| !!! AsnThrMetSerGlnSerValLysPheGlyLeuHisPheValGlyIleTrpProGlyThrProP 70 : AATACAATGAGCCAATCTGTTAAGTTTGGTCTACATTTTGTCGGTATTTGGCCAGGAACACCAT : 133 24 : yrAlaIleLeuArgLysPhePheTyrIleSerLeuMetAlaIlePheGlnIleLeuGlnTyrAr : 44 :! !!! !|||!.!|||.!! !!:::!!! ! !||||||:!!.!!|||! !! !|||||||| heProSerLeuHisLysIleGlyTrpValIleAlaMetAlaValLeuGlnThrTyrGlnTyrAr 134 : TCCCAAGTTTACATAAAATTGGTTGGGTCATAGCGATGGCTGTACTTCAAACTTATCAGTACAG : 196 45 : gTyrLeuPheLeuAsnPheGlyGluAsp<->LeuSerLeuLeuMetAspValLeuSerAlaAsn : 64 ||||:!!.!! !:!!!:! !...||| |||! !:!! !!!:||| !|||||| !!.! gTyrIleIleThrHisTyrLysSerAspSerLeuMetValThrIleAspAsnLeuSerIleThr 197 : ATACATCATTACGCATTATAAATCTGATAGTCTTATGGTCACAATAGATAATTTGAGCATCACC : 259 65 : LeuAlaTyrSerLeuLeuLeuIleLysLeuIle : 75 :!! !!!:!!!!|||:::||||||||||||||| MetProPheThrLeuValLeuIleLysLeuIle 260 : ATGCCATTCACTCTagtgttaattaaattaatt : 294 vulgar: CbirOr131 1 75 . LHQN01049708.1 69 294 + 147 M 52 156 G 0 3 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049708.1 exonerate:protein2genome:local gene 70 294 147 + . gene_id 1 ; sequence CbirOr131 ; gene_orientation . LHQN01049708.1 exonerate:protein2genome:local cds 70 294 . + . LHQN01049708.1 exonerate:protein2genome:local exon 70 294 . + . insertions 3 ; deletions 0 LHQN01049708.1 exonerate:protein2genome:local similarity 70 294 147 + . alignment_id 1 ; Query CbirOr131 ; Align 70 2 156 ; Align 229 54 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr124 Target: LHQN01049708.1 Habropoda laboriosa contig49708, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 4 -> 84 Target range: 69 -> 309 5 : AsnThrIleSerArgSerValGluIleCysLeuArgPheIleGlyLeuTrpProAsnSerAlaT : 26 ||||||!!:|||!:!||||||:!!.!! !!|||!.!|||:!!|||:!!||||||...!!! !!! AsnThrMetSerGlnSerValLysPheGlyLeuHisPheValGlyIleTrpProGlyThrProP 70 : AATACAATGAGCCAATCTGTTAAGTTTGGTCTACATTTTGTCGGTATTTGGCCAGGAACACCAT : 133 27 : yrAlaThrLeuTyrTrpIleThrTyrMetAlaThrLeuValIleMetGlnTyrCysGlnTyrAl : 47 :! !!!:!|||:!! ||| !!:::!: !.!!:!!!.!:!!:!:||| !! !|||||| heProSerLeuHisLysIleGlyTrpValIleAlaMetAlaValLeuGlnThrTyrGlnTyrAr 134 : TCCCAAGTTTACATAAAATTGGTTGGGTCATAGCGATGGCTGTACTTCAAACTTATCAGTACAG : 196 48 : aTyrIleValAlaArgPheGluLeuAsnAsnIleTrpLeuLeuMetAspCysLeuSerLeuThr : 68 !||||||:!!.!!!.!!:!:!!! !:!!!:!:!! !:!! !!!:||| !||||||:!!||| gTyrIleIleThrHisTyrLysSerAspSerLeuMetValThrIleAspAsnLeuSerIleThr 197 : ATACATCATTACGCATTATAAATCTGATAGTCTTATGGTCACAATAGATAATTTGAGCATCACC : 259 69 : LeuAlaTyrThrLeuValLeuPheLysLeuIleIleLeuTrpTrpAsn : 84 :!! !!!:!||||||||||||...|||||||||||| ||| ||| MetProPheThrLeuValLeuIleLysLeuIleIleThrTrpAlaAsn 260 : ATGCCATTCACTCTagtgttaattaaattaattattacttgGGCAAAT : 309 vulgar: CbirOr124 4 84 . LHQN01049708.1 69 309 + 180 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049708.1 exonerate:protein2genome:local gene 70 309 180 + . gene_id 1 ; sequence CbirOr124 ; gene_orientation . LHQN01049708.1 exonerate:protein2genome:local cds 70 309 . + . LHQN01049708.1 exonerate:protein2genome:local exon 70 309 . + . insertions 0 ; deletions 0 LHQN01049708.1 exonerate:protein2genome:local similarity 70 309 180 + . alignment_id 1 ; Query CbirOr124 ; Align 70 5 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr121PSE Target: LHQN01049708.1 Habropoda laboriosa contig49708, whole genome shotgun sequence Model: protein2genome:local Raw score: 163 Query range: 0 -> 84 Target range: 57 -> 309 1 : MetThrProThrSerThrValSerHisSerMetGlnIleGlyLeuArgIleValGlyIleTrpP : 22 |||! ! ! !!:!|||:!!|||!!.|||:!::!!.!!||||||!.!.!!||||||||||||| MetIleLeuArgAsnThrMetSerGlnSerValLysPheGlyLeuHisPheValGlyIleTrpP 58 : ATGATATTACGAAATACAATGAGCCAATCTGTTAAGTTTGGTCTACATTTTGTCGGTATTTGGC : 121 23 : roAsnAlaSerTyrSerLeuLeuPheArgCysAlaTrpIleLeuThrArgGlyMetIleGlnTh : 43 ||....!! !!!:! !! !||| !!:! !!.!|||:!!:!!.!!! !!.!:!::!!||||| roGlyThrProPheProSerLeuHisLysIleGlyTrpValIleAlaMetAlaValLeuGlnTh 122 : CAGGAACACCATTCCCAAGTTTACATAAAATTGGTTGGGTCATAGCGATGGCTGTACTTCAAAC : 184 44 : rGlyGlnPheUnkTrpIleIleIleHisPheGlyAsnGluAspLeuSerArgLeuMetAspIle : 64 | !|||!:! !::||||||! |||!:! !::!!!:..!|||! ! ! !!!:|||! ! rTyrGlnTyrArgTyrIleIleThrHisTyrLysSerAspSerLeuMetValThrIleAspAsn 185 : TTATCAGTACAGATACATCATTACGCATTATAAATCTGATAGTCTTATGGTCACAATAGATAAT : 247 65 : LeuSerIleThrThrGluTyrThrValMetIleLeuLysLeuMetIleLeuLeuLeuAsn : 84 ||||||||||||! ! !!:!|||:!::::::::::||||||:::||| ! !||| LeuSerIleThrMetProPheThrLeuValLeuIleLysLeuIleIleThrTrpAlaAsn 248 : TTGAGCATCACCATGCCATTCACTCTagtgttaattaaattaattattacttgGGCAAAT : 309 vulgar: CbirOr121PSE 0 84 . LHQN01049708.1 57 309 + 163 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049708.1 exonerate:protein2genome:local gene 58 309 163 + . gene_id 1 ; sequence CbirOr121PSE ; gene_orientation . LHQN01049708.1 exonerate:protein2genome:local cds 58 309 . + . LHQN01049708.1 exonerate:protein2genome:local exon 58 309 . + . insertions 0 ; deletions 0 LHQN01049708.1 exonerate:protein2genome:local similarity 58 309 163 + . alignment_id 1 ; Query CbirOr121PSE ; Align 58 1 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr127 Target: LHQN01049708.1 Habropoda laboriosa contig49708, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 0 -> 82 Target range: 57 -> 303 1 : MetAlaValThrSerThrValSerProSerLeuLysIleGlyLeuArgLeuLeuGlyValTrpP : 22 ||| !:!! !!:!|||:!!|||! !|||:!!|||.!!||||||!.!!!!:!!|||:!!|||| MetIleLeuArgAsnThrMetSerGlnSerValLysPheGlyLeuHisPheValGlyIleTrpP 58 : ATGATATTACGAAATACAATGAGCCAATCTGTTAAGTTTGGTCTACATTTTGTCGGTATTTGGC : 121 23 : roGlyValProLeuSerThrPheTyrTrpLeuThrPheMetSerSerIleLeuIleLeuGlnTy : 43 |||||..!|||!!! !!!:!!!.:!! :!! !!:::!:! !:!!!!: !:!!|||||| roGlyThrProPheProSerLeuHisLysIleGlyTrpValIleAlaMetAlaValLeuGlnTh 122 : CAGGAACACCATTCCCAAGTTTACATAAAATTGGTTGGGTCATAGCGATGGCTGTACTTCAAAC : 184 44 : rPheGlnTyrGlnTyrIlePheGluHisPheLysIleSerGluLeuProAsnLeuValAspGly : 64 !!:!||||||::!||||||.!! !|||!:!||| !..!...||| ! ! !:!!|||..! rTyrGlnTyrArgTyrIleIleThrHisTyrLysSerAspSerLeuMetValThrIleAspAsn 185 : TTATCAGTACAGATACATCATTACGCATTATAAATCTGATAGTCTTATGGTCACAATAGATAAT : 247 65 : LeuProAlaThrLeuAspTyrThrLeuThrPheLeuLysLeuAlaSerLeuTrp : 82 ||| ! !|||:!! !:!||||||......:::|||||| ||| LeuSerIleThrMetProPheThrLeuValLeuIleLysLeuIleIleThrTrp 248 : TTGAGCATCACCATGCCATTCACTCTagtgttaattaaattaattattacttgG : 303 vulgar: CbirOr127 0 82 . LHQN01049708.1 57 303 + 170 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049708.1 exonerate:protein2genome:local gene 58 303 170 + . gene_id 1 ; sequence CbirOr127 ; gene_orientation . LHQN01049708.1 exonerate:protein2genome:local cds 58 303 . + . LHQN01049708.1 exonerate:protein2genome:local exon 58 303 . + . insertions 0 ; deletions 0 LHQN01049708.1 exonerate:protein2genome:local similarity 58 303 170 + . alignment_id 1 ; Query CbirOr127 ; Align 58 1 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr137 Target: LHQN01049708.1 Habropoda laboriosa contig49708, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 0 -> 84 Target range: 57 -> 309 1 : MetThrAsnThrSerThrIleCysPheSerIleLysPheValLeuLeuValPheGlyIleTrpP : 22 |||! ! !!:!|||!!: !! |||:!!||||||! !|||! ! !! !!|||||||||| MetIleLeuArgAsnThrMetSerGlnSerValLysPheGlyLeuHisPheValGlyIleTrpP 58 : ATGATATTACGAAATACAATGAGCCAATCTGTTAAGTTTGGTCTACATTTTGTCGGTATTTGGC : 121 23 : roGlyValSerCysValIleLeuHisArgLeuPheTrpSerSerThrLeuIleIleThrGlnIl : 43 |||||..! !!! ! !! !||||||!:!:!! !||| !! !.!!:!! !:!! !|||! roGlyThrProPheProSerLeuHisLysIleGlyTrpValIleAlaMetAlaValLeuGlnTh 122 : CAGGAACACCATTCCCAAGTTTACATAAAATTGGTTGGGTCATAGCGATGGCTGTACTTCAAAC : 184 44 : ePheGlnTyrAlaTyrPheIleLeuHisPheHisThrAspAsnLeuSerAspLeuMetAspAsn : 64 !!:!|||||| !|||.!!||| !|||!:! ! :!!|||!:!|||! !! ! !!!:|||||| rTyrGlnTyrArgTyrIleIleThrHisTyrLysSerAspSerLeuMetValThrIleAspAsn 185 : TTATCAGTACAGATACATCATTACGCATTATAAATCTGATAGTCTTATGGTCACAATAGATAAT : 247 65 : LeuSerCysAlaLeuAlaTyrSerLeuLeuPhePheLysLeuIleIlePheTrpThrAsn : 84 |||||| !.!!:!! !!!:!!!!|||:::......|||||||||||| |||.!!||| LeuSerIleThrMetProPheThrLeuValLeuIleLysLeuIleIleThrTrpAlaAsn 248 : TTGAGCATCACCATGCCATTCACTCTagtgttaattaaattaattattacttgGGCAAAT : 309 vulgar: CbirOr137 0 84 . LHQN01049708.1 57 309 + 174 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049708.1 exonerate:protein2genome:local gene 58 309 174 + . gene_id 1 ; sequence CbirOr137 ; gene_orientation . LHQN01049708.1 exonerate:protein2genome:local cds 58 309 . + . LHQN01049708.1 exonerate:protein2genome:local exon 58 309 . + . insertions 0 ; deletions 0 LHQN01049708.1 exonerate:protein2genome:local similarity 58 309 174 + . alignment_id 1 ; Query CbirOr137 ; Align 58 1 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr132 Target: LHQN01049708.1 Habropoda laboriosa contig49708, whole genome shotgun sequence Model: protein2genome:local Raw score: 163 Query range: 3 -> 83 Target range: 69 -> 309 4 : ThrThrLeuSerArgLeuIleArgIleGlyLeuHisIlePheGlyValTrpProTyrValSerS : 25 !.!|||:!!|||!:!! !:!!!:!.!!|||||||||.!! !!|||:!!|||||| ..! !!! AsnThrMetSerGlnSerValLysPheGlyLeuHisPheValGlyIleTrpProGlyThrProP 70 : AATACAATGAGCCAATCTGTTAAGTTTGGTCTACATTTTGTCGGTATTTGGCCAGGAACACCAT : 133 26 : erThrValLeuPheArgLeuTyrTrpIleValMetLeuSerThrAlaGlnValPheGlnTyrAr : 46 ! !! !||| !!:!:!! !|||:!!:!! !:!!:!!..! !|||..!!:!|||||||| heProSerLeuHisLysIleGlyTrpValIleAlaMetAlaValLeuGlnThrTyrGlnTyrAr 134 : TCCCAAGTTTACATAAAATTGGTTGGGTCATAGCGATGGCTGTACTTCAAACTTATCAGTACAG : 196 47 : gTyrValValValAsnIleHisMetAspAspPheSerGlnPheMetAspGlyValSerSerAla : 67 ||||:!!:!!..!:!! ! ! |||..!.!!! ! !!:|||..!:!!|||! !.!! gTyrIleIleThrHisTyrLysSerAspSerLeuMetValThrIleAspAsnLeuSerIleThr 197 : ATACATCATTACGCATTATAAATCTGATAGTCTTATGGTCACAATAGATAATTTGAGCATCACC : 259 68 : MetAlaSerSerLeuLeuPheIleLysLeuIleIleLeuTrpIleAsn : 83 ||| !!! !!!!|||:::...||||||||||||||| ||| !||| MetProPheThrLeuValLeuIleLysLeuIleIleThrTrpAlaAsn 260 : ATGCCATTCACTCTagtgttaattaaattaattattacttgGGCAAAT : 309 vulgar: CbirOr132 3 83 . LHQN01049708.1 69 309 + 163 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049708.1 exonerate:protein2genome:local gene 70 309 163 + . gene_id 1 ; sequence CbirOr132 ; gene_orientation . LHQN01049708.1 exonerate:protein2genome:local cds 70 309 . + . LHQN01049708.1 exonerate:protein2genome:local exon 70 309 . + . insertions 0 ; deletions 0 LHQN01049708.1 exonerate:protein2genome:local similarity 70 309 163 + . alignment_id 1 ; Query CbirOr132 ; Align 70 4 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr136 Target: LHQN01049708.1 Habropoda laboriosa contig49708, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 0 -> 82 Target range: 57 -> 303 1 : MetLysLeuGluAsnThrIleSerGlnValThrArgValTrpLeuGluIlePheGlyMetTrpP : 22 |||! !|||..!||||||!!:|||||| !..!!:! !! ! |||.!..!! !!|||!!:|||| MetIleLeuArgAsnThrMetSerGlnSerValLysPheGlyLeuHisPheValGlyIleTrpP 58 : ATGATATTACGAAATACAATGAGCCAATCTGTTAAGTTTGGTCTACATTTTGTCGGTATTTGGC : 121 23 : roAsnSerSerCysIlePheLeuArgArgIlePheTrpValValAlaLeuIlePheGluGlnVa : 43 ||...!!! !!! ! ! !|||!.!!:!||| !||||||:!!|||:!! ! ! |||.. roGlyThrProPheProSerLeuHisLysIleGlyTrpValIleAlaMetAlaValLeuGlnTh 122 : CAGGAACACCATTCCCAAGTTTACATAAAATTGGTTGGGTCATAGCGATGGCTGTACTTCAAAC : 184 44 : lGlyGlnTyrGlnTyrIleIleMetHisLeuTyrSerThrGluIleSerGluLeuMetAsnHis : 64 ! !||||||::!|||||||||! !|||! ! ! ||| !...:!!! !! !!!::!!:!! rTyrGlnTyrArgTyrIleIleThrHisTyrLysSerAspSerLeuMetValThrIleAspAsn 185 : TTATCAGTACAGATACATCATTACGCATTATAAATCTGATAGTCTTATGGTCACAATAGATAAT : 247 65 : LeuSerAlaAlaMetSerPheThrLeuPheCysIleLysLeuValValPheTrp : 82 |||||| !.!!||| !!||||||||| |||||||||:::::: ||| LeuSerIleThrMetProPheThrLeuValLeuIleLysLeuIleIleThrTrp 248 : TTGAGCATCACCATGCCATTCACTCTagtgttaattaaattaattattacttgG : 303 vulgar: CbirOr136 0 82 . LHQN01049708.1 57 303 + 161 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049708.1 exonerate:protein2genome:local gene 58 303 161 + . gene_id 1 ; sequence CbirOr136 ; gene_orientation . LHQN01049708.1 exonerate:protein2genome:local cds 58 303 . + . LHQN01049708.1 exonerate:protein2genome:local exon 58 303 . + . insertions 0 ; deletions 0 LHQN01049708.1 exonerate:protein2genome:local similarity 58 303 161 + . alignment_id 1 ; Query CbirOr136 ; Align 58 1 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr135 Target: LHQN01049708.1 Habropoda laboriosa contig49708, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 0 -> 82 Target range: 57 -> 303 1 : MetLysLeuGluAspThrIleSerGlnAlaThrArgValTrpLeuGluValPheGlyIleTrpP : 22 |||! !|||..!:!!|||!!:||||||:!!..!!:! !! ! |||.!. !! !!|||||||||| MetIleLeuArgAsnThrMetSerGlnSerValLysPheGlyLeuHisPheValGlyIleTrpP 58 : ATGATATTACGAAATACAATGAGCCAATCTGTTAAGTTTGGTCTACATTTTGTCGGTATTTGGC : 121 23 : roAsnSerSerCysIlePheLeuArgArgMetPheTrpThrAlaAlaLeuIleIleGluGlnVa : 43 ||...!!! !!! ! ! !|||!.!!:!!!: !|||..! !|||:!! !:!! |||.. roGlyThrProPheProSerLeuHisLysIleGlyTrpValIleAlaMetAlaValLeuGlnTh 122 : CAGGAACACCATTCCCAAGTTTACATAAAATTGGTTGGGTCATAGCGATGGCTGTACTTCAAAC : 184 44 : lGlyGlnTyrGlnTyrIleIleMetHisLeuTyrSerThrGluValSerGluIleMetAsnLeu : 64 ! !||||||::!|||||||||! !|||! ! ! ||| !...:!!! !! ! !!!::!! ! rTyrGlnTyrArgTyrIleIleThrHisTyrLysSerAspSerLeuMetValThrIleAspAsn 185 : TTATCAGTACAGATACATCATTACGCATTATAAATCTGATAGTCTTATGGTCACAATAGATAAT : 247 65 : LeuSerAlaAlaMetSerPheThrLeuPheCysIleLysLeuGlyThrPheTrp : 82 |||||| !.!!||| !!||||||||| ||||||||| ||| LeuSerIleThrMetProPheThrLeuValLeuIleLysLeuIleIleThrTrp 248 : TTGAGCATCACCATGCCATTCACTCTagtgttaattaaattaattattacttgG : 303 vulgar: CbirOr135 0 82 . LHQN01049708.1 57 303 + 138 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049708.1 exonerate:protein2genome:local gene 58 303 138 + . gene_id 1 ; sequence CbirOr135 ; gene_orientation . LHQN01049708.1 exonerate:protein2genome:local cds 58 303 . + . LHQN01049708.1 exonerate:protein2genome:local exon 58 303 . + . insertions 0 ; deletions 0 LHQN01049708.1 exonerate:protein2genome:local similarity 58 303 138 + . alignment_id 1 ; Query CbirOr135 ; Align 58 1 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr131 Target: LHQN01049752.1 Habropoda laboriosa contig49752, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 105 -> 195 Target range: 132 -> 399 106 : MetThrArgMetAlaCysIleSerArgArgTyrSerAsnLeuIleIleValLeuTyrAlaMetS : 127 |||:!!!:!! !.! :::||| :::::::!!|||!!: !! !||| !:!:| MetSerLysThrGlyGlnLeuSerPheTyrLeuThrSerIleIleMetSerSerTyrMetValS 133 : ATGTCAAAAACCGGACAgctatctttttatttaacaagcATTATTATGTCTTCGTATATGGTAT : 196 128 : erValTrpPheTyrAlaThrGlyThrLeuLeuLysHisLysSerAspAsnGlnSerAspValAr : 148 ||!.! |||||| !||||||||| :!! :::...:::||| |||! !|| erAlaAlaPheTyrIleThrGlyThr---IleGlyPheGlnGluAsnAsnAlaSerValSerAr 197 : CTGCAGCATTTTACATAACTGGTACT---ATTGgatttcaagaaaataatgCTTCAGTATCTAG : 256 149 : gGluLeuLeuLeuLysMetGluLeuProPheAlaIleGluSerSerSerValTyrThrAlaVal : 169 |||||||||||||||||||!!:|||||||||!.!! !.....!||| !! !||| ! !||| gGluLeuLeuLeuLysMetAspLeuProPheGlyThrSerGluSerProAsnTyrGluLeuVal 257 : GGAGCTCCTTCTGAAAATGGATTTGCCTTTTGGGACCAGCGAATCGCCGAATTACGAACTTGTA : 319 170 : LeuIleThrGlnPheValHisGlnThrSerAlaAlaSerMetValGlyValIleAlaSerMetL : 191 :!!! !|||||| !!:!! !!!...!|||||||||! !! !!||||||.!!::!:!!:!:| ValThrThrGlnValLeuIleHisValSerAlaAlaLeuThrPheGlyValPheSerAlaLeuL 320 : GTAACTACACAAGTCCTTATTCACGTATCAGCGGCCTTAACATTCGGTGTATTCAGTGCTCTTC : 385 192 : euIleIleLeuVal : 195 ||:!!!!::!!||| euLeuMetValVal 386 : TCTTAATGGTGGTA : 399 vulgar: CbirOr131 105 195 . LHQN01049752.1 132 399 + 132 M 30 90 G 1 0 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049752.1 exonerate:protein2genome:local gene 133 399 132 + . gene_id 1 ; sequence CbirOr131 ; gene_orientation . LHQN01049752.1 exonerate:protein2genome:local cds 133 399 . + . LHQN01049752.1 exonerate:protein2genome:local exon 133 399 . + . insertions 0 ; deletions 1 LHQN01049752.1 exonerate:protein2genome:local similarity 133 399 132 + . alignment_id 1 ; Query CbirOr131 ; Align 133 106 90 ; Align 223 137 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr130 Target: LHQN01049752.1 Habropoda laboriosa contig49752, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 131 -> 214 Target range: 150 -> 399 132 : IleGlyLeuTyrSerMetSerValIleLeuTyrGlyThrGlyValLeuIleAlaHisSerAspG : 153 :::......||| |||:!!|||:!!! !..! ! !|||! ! !||| !! ! LeuSerPheTyrLeuThrSerIleIleMetSerSerTyrMetValSerAlaAlaPheTyrIleT 151 : ctatctttttatttaacaagcATTATTATGTCTTCGTATATGGTATCTGCAGCATTTTACATAA : 214 154 : luProGluAspGluLeuAsnGluGlnLeuAlaValProThrArgGluLeuPheLeuLysMetGl : 174 ! !! ......|||... ||| ! !:!!|||||||||.!!|||||||||!! hrGlyThrIleGlyPheGlnGluAsnAsnAlaSerValSerArgGluLeuLeuLeuLysMetAs 215 : CTGGTACTATTGgatttcaagaaaataatgCTTCAGTATCTAGGGAGCTCCTTCTGAAAATGGA : 277 175 : uLeuProPheGluSerAsnAlaSerProValTyrGluValValMetValThrGlnPhePheHis : 195 :|||||||||! !!!!!:!! !|||||| !||||||:!!|||:!:..!|||||| !!.!! ! pLeuProPheGlyThrSerGluSerProAsnTyrGluLeuValValThrThrGlnValLeuIle 278 : TTTGCCTTTTGGGACCAGCGAATCGCCGAATTACGAACTTGTAGTAACTACACAAGTCCTTATT : 340 196 : GlnLeuAlaAlaAlaThrIleValGlyValLeuAsnAlaLeuIleValSerLeuIle : 214 !!.:!!:!!|||||| !! ! !!||||||!!!!:!||||||:!!:!!! !:!!:!! HisValSerAlaAlaLeuThrPheGlyValPheSerAlaLeuLeuLeuMetValVal 341 : CACGTATCAGCGGCCTTAACATTCGGTGTATTCAGTGCTCTTCTCTTAATGGTGGTA : 399 vulgar: CbirOr130 131 214 . LHQN01049752.1 150 399 + 115 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049752.1 exonerate:protein2genome:local gene 151 399 115 + . gene_id 1 ; sequence CbirOr130 ; gene_orientation . LHQN01049752.1 exonerate:protein2genome:local cds 151 399 . + . LHQN01049752.1 exonerate:protein2genome:local exon 151 399 . + . insertions 0 ; deletions 0 LHQN01049752.1 exonerate:protein2genome:local similarity 151 399 115 + . alignment_id 1 ; Query CbirOr130 ; Align 151 132 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr120 Target: LHQN01049752.1 Habropoda laboriosa contig49752, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 73 -> 195 Target range: 27 -> 399 74 : PheLysLeuIleThrLeuTrpValLysAsnGlnIlePheLysAspIleLeuThrAlaMetSerL : 95 ||| ||| !! !:!! !:!! :!!...:!!.!!!..|||||||||:!!.!!|||..!: PhePheLeuSerLysIleThrIlePheHisSerValLeuSerAspIleLeuSerThrMetGluG 28 : ttttttttgtCTAAAATAACGATATTTCACAGCGTACTTAGTGACATTTTATCAACCATGGAAG : 91 96 : ysAspTrpAlaGluTyrSerAsnMet<-><-><->TyrThrMetValAspLysAlaValLeuSe : 113 !!|||!! !:!!|||:!! !:!: ! !||| ! ! ! !.! ||||| luAspCysGlnLysTyrAlaAlaValAspIleAsnLysLeuMetSerLysThrGlyGlnLeuSe 92 : AGGATTGTCAGAAATATGCTGCTGTAGATATAAATAAGTTGATGTCAAAAACCGGACAgctatc : 154 114 : rHisArgCysSerLysLeuIleIleGlyIleTyrAlaThrAlaValLeuLeuTyrSerThrAla : 134 | :::...:!!|||!!:..! ||| !..!:!!!.! !!!!|||! !|||!.! rPheTyrLeuThrSerIleIleMetSerSerTyrMetValSerAlaAlaPheTyrIleThrGly 155 : tttttatttaacaagcATTATTATGTCTTCGTATATGGTATCTGCAGCATTTTACATAACTGGT : 217 135 : ThrIleAspPheArgLysGlnThrIleAspAsnGluCysArgGlnGlnLeuIleLysMetGluL : 156 ||||||! |||::::::...... ! :::! !! !|||:!!! |||:!:||||||!!:| ThrIleGlyPheGlnGluAsnAsnAla---SerValSerArgGluLeuLeuLeuLysMetAspL 218 : ACTATTGgatttcaagaaaataatgCT---TCAGTATCTAGGGAGCTCCTTCTGAAAATGGATT : 280 157 : euProPheValPheCysAspSerProIleTyrGluIleMetValPheValGlnPheIleHisLe : 177 ||||||||! ! ! !!!!:||||||! !||||||:!!:!:||| !..!||| !!:!! !! euProPheGlyThrSerGluSerProAsnTyrGluLeuValValThrThrGlnValLeuIleHi 281 : TGCCTTTTGGGACCAGCGAATCGCCGAATTACGAACTTGTAGTAACTACACAAGTCCTTATTCA : 343 178 : uMetAlaValAlaSerThrIleGlyMetLeuAspAlaLeuIleValThrLeuMet : 195 !:!::!!!.!|||! !|||.!!|||:!:!!!..!||||||:!!:!!! !:!!:!: sValSerAlaAlaLeuThrPheGlyValPheSerAlaLeuLeuLeuMetValVal 344 : CGTATCAGCGGCCTTAACATTCGGTGTATTCAGTGCTCTTCTCTTAATGGTGGTA : 399 vulgar: CbirOr120 73 195 . LHQN01049752.1 27 399 + 112 M 30 90 G 0 9 M 40 120 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049752.1 exonerate:protein2genome:local gene 28 399 112 + . gene_id 1 ; sequence CbirOr120 ; gene_orientation . LHQN01049752.1 exonerate:protein2genome:local cds 28 399 . + . LHQN01049752.1 exonerate:protein2genome:local exon 28 399 . + . insertions 9 ; deletions 1 LHQN01049752.1 exonerate:protein2genome:local similarity 28 399 112 + . alignment_id 1 ; Query CbirOr120 ; Align 28 74 90 ; Align 127 104 120 ; Align 247 145 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr127 Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 319 -> 387 Target range: 824 -> 1197 320 : SerLysSerIleAlaAspAlaAlaTyrGluSerLeuTrpTyrAspIleProProAspHisVa : 340 |||:!! !|||!.!:!!.!!|||||||||! !||||||||||||:!!! ! !! !.!. SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSe 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAG : 885 341 : lLysIleIleLeuPheMetIleMetArgSerGlnArgGlyLeuAlaIleThrAlaGlyArgI : 361 !:!!:!!:!!:!! !:!:|||:!!|||||||||!:!|||!!!.!!...||| |||:::. rGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysP 886 : CCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaat : 948 362 : leThrAsnLeuSerLeuGluAlaPheAlaSer >>>> Target Intron 1 >>>> I : 372 ..::::::||||||||||||::!|||.!!:!! 169 bp | heSerSerLeuSerLeuGluSerPheThrAla++ ++I 949 : tttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.........................agA : 1150 373 : leMetLysAlaSerValSerTyrIleSerValLeuHisAlaMetTyr : 387 ||||||||!.!|||!.!||||||||||||||||||! !|||:!!||| leMetLysValSerAlaSerTyrIleSerValLeuLeuAlaValTyr 1151 : TCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTGTAT : 1197 vulgar: CbirOr127 319 387 . LHQN01050112.1 824 1197 + 155 M 52 156 5 0 2 I 0 165 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 1197 155 + . gene_id 1 ; sequence CbirOr127 ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 825 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1197 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1197 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 1197 155 + . alignment_id 1 ; Query CbirOr127 ; Align 825 320 156 ; Align 1150 372 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr131 Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 309 -> 377 Target range: 824 -> 1197 310 : SerLysThrIleGlyAspAlaAlaTyrGluSerLeuTrpTyrAsnArgThrProAlaGlnAs : 330 |||:!! !||||||:!!.!!|||||||||! !|||||||||:!! ! ! !!.!!:!!!: SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSe 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAG : 885 331 : nArgAspLeuLeuLeuMetIleMetArgSerGlnLysHisLeuSerLeuThrValGlyLysV : 351 !!:! !|||:!!! !:!:|||:!!|||||||||||| !!!!!!!!..||| |||||| rGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysP 886 : CCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaat : 948 352 : alValAspLeuSerLeuGlnGlnPheAlaSer >>>> Target Intron 1 >>>> V : 362 ...|||||||||:!!...|||.!!:!! 169 bp : heSerSerLeuSerLeuGluSerPheThrAla++ ++I 949 : tttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.........................agA : 1150 363 : alValLysValSerAlaSerTyrValSerValLeuHisAlaMetTyr : 377 !!:!!||||||||||||||||||:!!|||||||||! !|||:!!||| leMetLysValSerAlaSerTyrIleSerValLeuLeuAlaValTyr 1151 : TCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTGTAT : 1197 vulgar: CbirOr131 309 377 . LHQN01050112.1 824 1197 + 150 M 52 156 5 0 2 I 0 165 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 1197 150 + . gene_id 1 ; sequence CbirOr131 ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 825 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1197 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1197 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 1197 150 + . alignment_id 1 ; Query CbirOr131 ; Align 825 310 156 ; Align 1150 362 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr123 Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 319 -> 387 Target range: 824 -> 1197 320 : SerLysSerIleSerAspAlaValTyrGluSerLeuTrpTyrAspMetProProThrAspSe : 340 |||:!! !|||.!!:!!.!!!.!||||||! !||||||||||||:!:! ! !!|||!!:|| SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSe 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAG : 885 341 : rArgIleLeuLeuPheIleIleIleArgSerGlnLysArgLeuThrIleThrAlaGlyLysV : 361 |!:!:!!|||:!! !:!!|||:!:|||||||||||| !!!!!|||...||| |||||| rGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysP 886 : CCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaat : 948 362 : alValAspLeuThrLeuGluGlyPheThrSer >>>> Target Intron 1 >>>> I : 372 ...|||:!!||||||.!!||||||:!! 169 bp | heSerSerLeuSerLeuGluSerPheThrAla++ ++I 949 : tttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.........................agA : 1150 373 : leMetLysAlaSerAlaSerTyrValSerValLeuAsnAlaMetTyr : 387 ||||||||!.!||||||||||||:!!||||||||| !|||:!!||| leMetLysValSerAlaSerTyrIleSerValLeuLeuAlaValTyr 1151 : TCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTGTAT : 1197 vulgar: CbirOr123 319 387 . LHQN01050112.1 824 1197 + 171 M 52 156 5 0 2 I 0 165 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 1197 171 + . gene_id 1 ; sequence CbirOr123 ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 825 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1197 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1197 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 1197 171 + . alignment_id 1 ; Query CbirOr123 ; Align 825 320 156 ; Align 1150 372 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr129PSE(F) Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 311 -> 379 Target range: 824 -> 1197 312 : SerLysSerIleGlyAspAlaAlaTyrGluSerLeuTrpTyrAsnMetThrProAspLysCy : 332 |||:!! !||||||:!!.!!|||||||||! !|||||||||:!!:!: ! !! !:!! ! SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSe 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAG : 885 333 : sArgIleIleLeuPheValIleLeuArgSerGlnLysArgLeuThrIleThrAlaGlyAsnV : 353 !!:!:!!:!!:!! !||||||||||||||||||||| !!!!!|||...||| |||... rGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysP 886 : CCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaat : 948 354 : alMetAspLeuSerLeuGlnGlyPheThrThr >>>> Target Intron 1 >>>> V : 364 ...|||||||||:!!.!!||||||.!! 169 bp : heSerSerLeuSerLeuGluSerPheThrAla++ ++I 949 : tttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.........................agA : 1150 365 : alMetLysAlaSerAlaSerTyrIleSerMetLeuHisAlaMetTyr : 379 !!||||||!.!||||||||||||||||||:!:|||! !|||:!!||| leMetLysValSerAlaSerTyrIleSerValLeuLeuAlaValTyr 1151 : TCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTGTAT : 1197 vulgar: CbirOr129PSE(F) 311 379 . LHQN01050112.1 824 1197 + 158 M 52 156 5 0 2 I 0 165 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 1197 158 + . gene_id 1 ; sequence CbirOr129PSE(F) ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 825 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1197 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1197 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 1197 158 + . alignment_id 1 ; Query CbirOr129PSE(F) ; Align 825 312 156 ; Align 1150 364 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr126 Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 310 -> 378 Target range: 824 -> 1197 311 : SerLysSerIleGlyAspAlaAlaTyrGluThrLeuTrpTyrAspLeuSerThrLysGluCy : 331 |||:!! !||||||:!!.!!||||||||| !||||||||||||||| !!:!!! ||| ! SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSe 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAG : 885 332 : sArgIleLeuLeuLeuIleIleIleArgSerGlnLysArgLeuThrIleThrAlaGlyLysV : 352 !!:!:!!|||:!!! !:!!|||:!:|||||||||||| !!!!!|||...||| |||||| rGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysP 886 : CCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaat : 948 353 : alMetAspLeuThrLeuGluGlyPheThrSer >>>> Target Intron 1 >>>> V : 363 ...|||:!!||||||.!!||||||:!! 169 bp : heSerSerLeuSerLeuGluSerPheThrAla++ ++I 949 : tttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.........................agA : 1150 364 : alMetLysAlaSerAlaSerTyrIleSerValLeuHisValIleTyr : 378 !!||||||!.!||||||||||||||||||||||||! !!.!:!:||| leMetLysValSerAlaSerTyrIleSerValLeuLeuAlaValTyr 1151 : TCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTGTAT : 1197 vulgar: CbirOr126 310 378 . LHQN01050112.1 824 1197 + 178 M 52 156 5 0 2 I 0 165 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 1197 178 + . gene_id 1 ; sequence CbirOr126 ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 825 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1197 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1197 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 1197 178 + . alignment_id 1 ; Query CbirOr126 ; Align 825 311 156 ; Align 1150 363 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr125 Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 179 Query range: 313 -> 381 Target range: 824 -> 1197 314 : SerLysSerIleGlyAspAlaAlaTyrGluAlaValTrpTyrAspLeuSerThrSerGluCy : 334 |||:!! !||||||:!!.!!||||||||| !:!!|||||||||||| !!:!!!!!||| ! SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSe 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAG : 885 335 : sArgValLeuLeuPheLeuIleLeuArgSerGlnLysArgLeuThrIleThrAlaGlyLysV : 355 !!:!:!!|||:!! !:!!|||||||||||||||||| !!!!!|||...||| |||||| rGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysP 886 : CCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaat : 948 356 : alThrAspLeuThrLeuGluAlaPheThrThr >>>> Target Intron 1 >>>> V : 366 :::...|||:!!||||||::!||||||.!! 169 bp : heSerSerLeuSerLeuGluSerPheThrAla++ ++I 949 : tttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.........................agA : 1150 367 : alMetLysAlaSerAlaSerTyrIleSerValLeuHisAlaMetTyr : 381 !!||||||!.!||||||||||||||||||||||||! !|||:!!||| leMetLysValSerAlaSerTyrIleSerValLeuLeuAlaValTyr 1151 : TCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTGTAT : 1197 vulgar: CbirOr125 313 381 . LHQN01050112.1 824 1197 + 179 M 52 156 5 0 2 I 0 165 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 1197 179 + . gene_id 1 ; sequence CbirOr125 ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 825 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1197 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1197 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 1197 179 + . alignment_id 1 ; Query CbirOr125 ; Align 825 314 156 ; Align 1150 366 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr137 Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 319 -> 386 Target range: 824 -> 1194 320 : SerGlnHisIleAlaAspAlaAlaTyrArgSerLeuTrpTyrAsnMetThrValAsnGluSe : 340 ||||||! |||!.!:!!.!!||||||..!! !|||||||||:!!:!: ! !!.!||||| SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSe 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAG : 885 341 : rArgThrIleSerPheLeuIleIleArgSerGlnLysArgLeuThrIleThrIleGlyLysI : 361 |!:! !:!!! ! !:!!|||:!:|||||||||||| !!!!!|||...|||...||||||. rGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysP 886 : CCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaat : 948 362 : leMetAspLeuSerLeuGluArgPheThrSer >>>> Target Intron 1 >>>> V : 372 .. ...||||||||||||!!!||||||:!! 169 bp : heSerSerLeuSerLeuGluSerPheThrAla++ ++I 949 : tttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.........................agA : 1150 373 : alIleLysAlaSerAlaSerTyrIleSerValLeuMetAlaIle : 386 !!!!:|||!.!||||||||||||||||||||||||:!:|||:!: leMetLysValSerAlaSerTyrIleSerValLeuLeuAlaVal 1151 : TCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTG : 1194 vulgar: CbirOr137 319 386 . LHQN01050112.1 824 1194 + 157 M 52 156 5 0 2 I 0 165 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 1194 157 + . gene_id 1 ; sequence CbirOr137 ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 825 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1194 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1194 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 1194 157 + . alignment_id 1 ; Query CbirOr137 ; Align 825 320 156 ; Align 1150 372 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr133 Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 314 -> 382 Target range: 824 -> 1197 315 : SerLysMetIleGlyAspAlaAlaTyrAsnSerLeuTrpTyrAspValAlaThrLysLysAs : 335 |||:!!:!:||||||:!!.!!||||||.!.! !||||||||||||:!! !:!!! :!!!: SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSe 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAG : 885 336 : nLeuIleIleLeuPheIleIleLeuArgSerGlnLysArgLeuThrIleThrIleGlyLysV : 356 !! !:!!:!!:!! !:!!|||||||||||||||||| !!!!!|||...|||...|||||| rGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysP 886 : CCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaat : 948 357 : alMetAspLeuSerLeuGluArgPheThrSer >>>> Target Intron 1 >>>> V : 367 ...||||||||||||!!!||||||:!! 169 bp : heSerSerLeuSerLeuGluSerPheThrAla++ ++I 949 : tttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.........................agA : 1150 368 : alValLysAlaSerAlaSerTyrIleSerValLeuLeuAlaMetTyr : 382 !!:!!|||!.!||||||||||||||||||||||||||||||:!!||| leMetLysValSerAlaSerTyrIleSerValLeuLeuAlaValTyr 1151 : TCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTGTAT : 1197 vulgar: CbirOr133 314 382 . LHQN01050112.1 824 1197 + 177 M 52 156 5 0 2 I 0 165 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 1197 177 + . gene_id 1 ; sequence CbirOr133 ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 825 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1197 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1197 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 1197 177 + . alignment_id 1 ; Query CbirOr133 ; Align 825 315 156 ; Align 1150 367 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr132 Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 176 Query range: 317 -> 385 Target range: 824 -> 1197 318 : SerLysMetIleGlyAsnAlaAlaTyrAsnAlaLeuTrpTyrAspIleProThrLysGlnSe : 338 |||:!!:!:|||||||||.!!||||||.!. !||||||||||||:!!! !:!!! :!!|| SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSe 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAG : 885 339 : rArgIleValSerPheIleIleLeuArgSerGlnLysLeuLeuThrIleThrSerGlyLysI : 359 |!:!:!!:!!! ! !:!!|||||||||||||||||| !!!!|||...||| ||||||. rGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysP 886 : CCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaat : 948 360 : leMetAspLeuSerLeuGluArgPheThrSer >>>> Target Intron 1 >>>> V : 370 .. ...||||||||||||!!!||||||:!! 169 bp : heSerSerLeuSerLeuGluSerPheThrAla++ ++I 949 : tttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.........................agA : 1150 371 : alValLysAlaSerAlaSerTyrLeuSerMetLeuLeuAlaMetTyr : 385 !!:!!|||!.!||||||||||||:!!|||:!:|||||||||:!!||| leMetLysValSerAlaSerTyrIleSerValLeuLeuAlaValTyr 1151 : TCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTGTAT : 1197 vulgar: CbirOr132 317 385 . LHQN01050112.1 824 1197 + 176 M 52 156 5 0 2 I 0 165 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 1197 176 + . gene_id 1 ; sequence CbirOr132 ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 825 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1197 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1197 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 1197 176 + . alignment_id 1 ; Query CbirOr132 ; Align 825 318 156 ; Align 1150 370 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr130 Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 328 -> 395 Target range: 824 -> 1194 329 : SerArgMetIleGlyAspAlaAlaTyrGluAlaLysTrpTyrAsnSerSerProLysGlnSe : 349 |||!:!:!:||||||:!!.!!||||||||| ! ||||||:!!! ! !! !!! :!!|| SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSe 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAG : 885 350 : rArgValLeuLeuLeuLeuIleLeuArgSerGlnArgLysLeuThrIleThrIleGlyLysP : 370 |!:!:!!|||:!!! !:!!|||||||||||||||!:! !!!|||...|||...||||||| rGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysP 886 : CCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaat : 948 371 : heMetAspLeuSerLeuGluArgPheThrThr >>>> Target Intron 1 >>>> I : 381 || ...||||||||||||!!!||||||.!! 169 bp | heSerSerLeuSerLeuGluSerPheThrAla++ ++I 949 : tttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.........................agA : 1150 382 : leIleLysAlaSerAlaSerTyrValSerValLeuHisAlaMet : 395 ||!!:|||!.!||||||||||||:!!|||||||||! !|||:!! leMetLysValSerAlaSerTyrIleSerValLeuLeuAlaVal 1151 : TCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTG : 1194 vulgar: CbirOr130 328 395 . LHQN01050112.1 824 1194 + 162 M 52 156 5 0 2 I 0 165 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 1194 162 + . gene_id 1 ; sequence CbirOr130 ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 825 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1194 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1194 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 1194 162 + . alignment_id 1 ; Query CbirOr130 ; Align 825 329 156 ; Align 1150 381 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr120 Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 309 -> 377 Target range: 824 -> 1197 310 : SerLysMetIleGlyAspAlaAlaTyrGluSerLeuTrpTyrValLeuLysProGluAspCy : 330 |||:!!:!:||||||:!!.!!|||||||||! !|||||||||! !|||::: !! !!: ! SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSe 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAG : 885 331 : sArgIleLeuLeuPheValIleMetArgSerGlnArgArgLeuThrIleThrAlaGlyGlnP : 351 !!:!:!!|||:!! !||||||:!!|||||||||!:! !!!!!|||...||| |||:::| rGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysP 886 : CCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaat : 948 352 : heMetAspLeuSerLeuGluGlyPheAlaAsn >>>> Target Intron 1 >>>> S : 362 || ...||||||||||||.!!|||.!! ! 169 bp ! heSerSerLeuSerLeuGluSerPheThrAla++ ++I 949 : tttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.........................agA : 1150 363 : erLeuLysAlaSerAlaSerTyrIleSerValLeuTyrAlaMetTyr : 377 !:!!|||!.!|||||||||||||||||||||||| !|||:!!||| leMetLysValSerAlaSerTyrIleSerValLeuLeuAlaValTyr 1151 : TCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTGTAT : 1197 vulgar: CbirOr120 309 377 . LHQN01050112.1 824 1197 + 162 M 52 156 5 0 2 I 0 165 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 1197 162 + . gene_id 1 ; sequence CbirOr120 ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 825 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1197 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1197 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 1197 162 + . alignment_id 1 ; Query CbirOr120 ; Align 825 310 156 ; Align 1150 362 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr141 Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 244 -> 369 Target range: 1306928 -> 1306556 245 : IleIleSerPheLeuGluTyrIleGluAspLeuTyrThrTyrIleAlaLeuValGl : 263 :!! !||| ! :!!.!. :::...:::|||:::||| !|||!.!!!!||||| LeuTyrSerValValAsnAspValAsnAsnLeuPheThrProIleValPheValGl 1306928 : TTATACAGCGTGGTGAATGatgtgaataatttatttactccCATCGTTTTCGTACA : 1306874 264 : nPheIleSerAsnThrMetLeuMetCysSerLeuGlyPheLeuIleAlaIleGlyA : 282 |.!!:!!!!!!:! !!!::!!!!:|||! ! !|||||| |||:!! !: nLeuLeuThrSerGlyIleValIleCysLeuSerGlyPhe------AlaValPheA 1306873 : ACTTCTTACAAGCGGAATAGTAATTTGTTTAAGTGGATTC------GCGGTTTTCG : 1306823 283 : snProAspAlaThrGluGlnIleValArgSerLeuLeuPheTyrAlaValThrAsn : 300 !! !|||||| ! .!.|||:!!!:!! !:!!! !!:!! :!! !! ! spAsnAspAlaArgThrAspIleLeuLysTyrValSerTyrLeuSerSerIleTrp 1306822 : ATAACGACGCCCGTACCGATATTCTGAAATACGTATCTTATTTGTCCTCGATTTGG : 1306769 301 : LeuGluValPheIlePheCysTyrAlaGlyGluTyrLeuLysAsnLysThrThrAl : 319 |||:!!:!!!!.:!!!::|||! !!|||||| !||| .!.:!!!:! !! LeuGlnLeuLeuLeuTrpCysLeuProGlyGluIleLeuValGlnGluSerLeuGl 1306768 : TTGCAACTTTTGTTATGGTGTTTGCCCGGTGAAATTCTCGTTCAAGAGAGTTTAGA : 1306712 320 : aIleGlyMetAlaAlaTyr<->AsnSerAlaTrpTyrGluLeuLysProLysHisS : 337 !|||||| !.!!.!||| ||| ! !!||||||.!.||| !|||! :!!. uIleGlyHisValValTyrLeuAsnValProTrpTyrAsnLeuProProIleTyrG 1306711 : AATAGGACACGTAGTCTACTTAAATGTACCATGGTACAATTTGCCGCCAATTTACC : 1306655 338 : erArgProLeuIlePheIleIleLeuArgAlaGlnLysGlnLeuThrIleThrVal : 355 .!||| !||| !.!.!!:|||||||||||||||:!! ! ! !!:!||||||!.! lnArgLysLeuCysMetMetIleLeuArgAlaGlnGlnTyrCysSerIleThrAla 1306654 : AGAGAAAACTTTGCATGATGATCCTTAGGGCACAACAATATTGCAGCATCACGGCA : 1306601 356 : GlyLysIleMetAspLeuSerLeuGluCysPheAlaSerIle : 369 !! !.!! ||||||:!!.!. !!..!!|||:!: LeuThrPheArgThrLeuSerIleHisThrLeuThrSerVal 1306600 : TTAACGTTTCGAACGTTGTCTATTCACACGTTAACGAGCGTG : 1306557 vulgar: CbirOr141 244 369 . KQ414608.1 1306928 1306556 - 139 M 32 96 G 2 0 M 47 141 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1306557 1306928 139 - . gene_id 1 ; sequence CbirOr141 ; gene_orientation . KQ414608.1 exonerate:protein2genome:local cds 1306557 1306928 . - . KQ414608.1 exonerate:protein2genome:local exon 1306557 1306928 . - . insertions 3 ; deletions 2 KQ414608.1 exonerate:protein2genome:local similarity 1306557 1306928 139 - . alignment_id 1 ; Query CbirOr141 ; Align 1306929 245 96 ; Align 1306833 279 141 ; Align 1306689 326 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr142CTE Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 246 -> 367 Target range: 1306913 -> 1306559 247 : GluAsnIleGluSerLeuTyrThrTyrIleAlaLeuSerGlnPheValSerAsnTh : 265 .!.::::::...:::|||:::||| !|||!.!!!! !|||.!!:!!!!!!:! AsnAspValAsnAsnLeuPheThrProIleValPheValGlnLeuLeuThrSerGl 1306913 : AATGatgtgaataatttatttactccCATCGTTTTCGTACAACTTCTTACAAGCGG : 1306859 266 : rIleMetIleCysSerLeuGlyPheLeuIleValMetAlaIleGlySerProAsnV : 284 !|||:!:||||||! ! !|||||| |||:!! !..! !:!!! yIleValIleCysLeuSerGlyPhe------------AlaValPheAspAsnAspA 1306858 : AATAGTAATTTGTTTAAGTGGATTC------------GCGGTTTTCGATAACGACG : 1306814 285 : alValGluGlnIleLeuArgSerValLeuPheTyrThrIleThrSerLeuGluAla : 302 .! ! .!.||||||!:!! !|||! !!:!! :!! ! !!!!|||:!! ! laArgThrAspIleLeuLysTyrValSerTyrLeuSerSerIleTrpLeuGlnLeu 1306813 : CCCGTACCGATATTCTGAAATACGTATCTTATTTGTCCTCGATTTGGTTGCAACTT : 1306760 303 : PheIlePheCysPheAlaGlyGluTyrLeuAsnAsnLysSerLysAlaIleGlyAl : 321 !!.:!!!::|||!!. !!|||||| !||| !.!.:!!||| !! !|||||| LeuLeuTrpCysLeuProGlyGluIleLeuValGlnGluSerLeuGluIleGlyHi 1306759 : TTGTTATGGTGTTTGCCCGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGACA : 1306703 322 : aAlaAlaTyr<->AsnSerLeuTrpTyrAsnLeuLysProLysAspSerArgValL : 339 !!.!!.!||| ||| !! !|||||||||||| !|||! !!..!||| !| sValValTyrLeuAsnValProTrpTyrAsnLeuProProIleTyrGlnArgLysL 1306702 : CGTAGTCTACTTAAATGTACCATGGTACAATTTGCCGCCAATTTACCAGAGAAAAC : 1306646 340 : euLeuPheMetIleLeuArgSerGlnLysGlnLeuThrLeuThrAlaGlyLysMet : 357 ||! !.!.||||||||||||:!!|||:!! ! ! !!:!:!!|||||| !! !.!. euCysMetMetIleLeuArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPhe 1306645 : TTTGCATGATGATCCTTAGGGCACAACAATATTGCAGCATCACGGCATTAACGTTT : 1306592 358 : MetAspLeuSerLeuGlnSerPheThrThr : 367 ||||||:!!!!.!!!!!.|||!:! ArgThrLeuSerIleHisThrLeuThrSer 1306591 : CGAACGTTGTCTATTCACACGTTAACGAGC : 1306560 vulgar: CbirOr142CTE 246 367 . KQ414608.1 1306913 1306559 - 118 M 27 81 G 4 0 M 47 141 G 0 3 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1306560 1306913 118 - . gene_id 1 ; sequence CbirOr142CTE ; gene_orientation . KQ414608.1 exonerate:protein2genome:local cds 1306560 1306913 . - . KQ414608.1 exonerate:protein2genome:local exon 1306560 1306913 . - . insertions 3 ; deletions 4 KQ414608.1 exonerate:protein2genome:local similarity 1306560 1306913 118 - . alignment_id 1 ; Query CbirOr142CTE ; Align 1306914 247 81 ; Align 1306833 278 141 ; Align 1306689 325 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr151 Target: KQ414615.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold33, whole genome shotgun sequence Model: protein2genome:local Raw score: 571 Query range: 0 -> 220 Target range: 2575368 -> 2576249 1 : MetAsnIleAspAspTyrValPheIleAsnLysArgValLeuLysPheValGlyLe : 19 ||||||||| :::|||||||||||||||:!!! !!.!||||||||||||||||| MetAsnIleLysAsnTyrValPheIleAsnGlnLeuAlaLeuLysPheValGlyLe 2575369 : AtgaacattaaaaattacgtCTTTATAAATCAACTGGCCCTAAAGTTTGTTGGACT : 2575423 20 : uTyrProThrAsnIleAlaArgTyrIleValCysCysValCysMetPheThrIleV : 38 |||||||! !!:!||| !||||||:!!:!!||| ! !|||!!:.!. !|||: uTyrProIleSerIleIleArgTyrLeuIleCysIleSerCysIleMetLeuIleI 2575424 : TTATCCAATAAGTATTATCAGATATCTTATATGCATTAGTTGTATTATGCTTATAA : 2575480 39 : alIleProGlnAlaValGlnIleTyrGlnAsnTrpArgAspLeuAlaValValLeu : 56 !!||||||||| !..!..!|||||| !|||||| !|||||| !:!!|||||| leIleProGlnIleThrMetIleTyrThrAsnTrpAspAspLeuAsnIleValLeu 2575481 : TCATACCACAAATAACAATGATTTATACAAATTGGGATGATCTAAATATCGTCTTG : 2575534 57 : GluThr{Se} >>>> Target Intron 1 >>>> {r}SerValLeuLeuTh : 64 ||||||{||} 78 bp {|}||| !|||||||| GluThr{Se}++ ++{r}SerSerLeuLeuTh 2575535 : GAAACA{AG}gt.........................ag{c}tCAAGTCTACTTAC : 2575636 65 : rIleLeuLeuAlaIleLeuLysSerLeuValTrpIleSerAsnArgArgLysMetA : 83 ||||! !||||||! !|||||||||:!!:!!|||!!: ||||||:::|||::: rIleSerLeuAlaThrLeuLysSerIleIleTrpMetPheAsnArgLysLysLeuA 2575637 : AATTTCCCTTGCTACATTAAAATCAATAATTTGGATgtttaacagaaaaaaattgg : 2575693 84 : spSerPheIleAspTyrMetPheThrAspTyrTrpAspValMetThrAlaHisIle : 101 !||||||!!:!:!|||!!.||||||||||||!!::!!:!:! !.!!:!!:!! laValPheIleGluPheMetLeuThrAspTyrTrpGluIleValLysThrAsnVal 2575694 : cGGTTTTCATTGAGTTCATGTTAACAGACTATTGGGAAATAGTTAAAACTAACGTT : 2575747 102 : SerLysHisGluAsnValTyrAla{Il} >>>> Target Intron 2 >>>> : 110 |||:!!:!! !.!.! !||||||{||} 84 bp SerGluTyrLeuGlnGluTyrAla{Il}++ + 2575748 : TCTGAATACCTACAAGAATATGCA{AT}gt.........................a : 2575858 111 : {e}TyrValArgLysGlyHisLeuPheThrLysGlyTyrLeuPheLeuIleCysA : 128 {|}|||...:::... ...||||||||||||...... :::|||| +{e}TyrAlaLysAsn---------IleThrLysGlyTyrPheIleSerMetCysA 2575859 : g{a}tatgctaaaaat---------attacaaagggttattttatttcaatgtgtA : 2575903 129 : snSerLeuLeuPhePhePheSerLeuProIlePheGluSerValValThrThrIle : 146 ||:!!||||||||||||! !||||||||||||.!!|||! ! !!|||||| ! ! snAlaLeuLeuPhePheCysSerLeuProIleIleGluIlePheValThrGluHis 2575904 : ATGCATTACTATTCTTCTGTAGCTTGCCTATTATCGAAATATTTGTTACTGAACAT : 2575957 147 : LysGlyThrSerAspAsnSerThrAsnAsnPheProPheValAlaLeuTyrProGl : 165 :!!..!:!!..!:!! !!!! !!!.||||||||||||!.!||| !|||||| GlnAsnSerAspAsnLeuThrLeuLysAsnPheProPheAlaAlaThrTyrProTh 2575958 : CAAAACTCTGATAATCTTACTCTGAAGAACTTTCCATTTGCTGCAACATATCCTAC : 2576014 166 : uSerTyrTyrAsnPheProMetTyrGlu >>>> Target Intron 3 >>>> : 175 :::||||||||||||...|||||| 68 bp rValPheTyrAsnPheProPheTyrGlu++ + 2576015 : agttttttataactttcctttttacgaggt.........................a : 2576110 176 : IleValTyrPheSerGlnMetLeuAlaThrSerLeuCysGlyLeuIleIleLeuG : 193 |||!.!||| ! |||||| !||||||||||||:!!||| !!|||!!:||||||! +IleAlaTyrValSerGlnAlaLeuAlaThrSerIleCysCysLeuMetIleLeuA 2576111 : gATTGCATATGTGTCTCAAGCGCTAGCAACCAGTATTTGTTGTCTAATGATACTTG : 2576166 194 : lyThrAspThrLeuIleAlaThrAlaLeuPheHisThrCysGlyHisPheArgVal : 211 .!|||||| !|||||||||||||||:!!.!!|||||||||||||||||| !||| laThrAspGlyLeuIleAlaThrAlaValLeuHisThrCysGlyHisPheAlaVal 2576167 : CAACTGATGGTCTAATTGCAACTGCTGTGCTCCATACATGTGGGCATTTTGCAGta : 2576220 212 : LeuGlnGlyLysIleGluHisIleAsn : 220 |||::: ...:::......:!!:!! LeuLysGluAsnLeuArgArgLeuAsp 2576221 : cttaaagaaaatttaaggcgACTTGAT : 2576249 vulgar: CbirOr151 0 220 . KQ414615.1 2575368 2576249 + 571 M 58 174 S 0 2 5 0 2 I 0 74 3 0 2 S 1 1 M 50 150 S 0 2 5 0 2 I 0 80 3 0 2 S 1 1 M 4 12 G 3 0 M 57 171 5 0 2 I 0 64 3 0 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414615.1 exonerate:protein2genome:local gene 2575369 2576249 571 + . gene_id 1 ; sequence CbirOr151 ; gene_orientation + KQ414615.1 exonerate:protein2genome:local cds 2575369 2575544 . + . KQ414615.1 exonerate:protein2genome:local exon 2575369 2575544 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2575545 2575546 . + . intron_id 1 ; splice_site "GT" KQ414615.1 exonerate:protein2genome:local intron 2575545 2575622 . + . intron_id 1 KQ414615.1 exonerate:protein2genome:local splice3 2575621 2575622 . + . intron_id 0 ; splice_site "ag" KQ414615.1 exonerate:protein2genome:local cds 2575623 2575775 . + . KQ414615.1 exonerate:protein2genome:local exon 2575623 2575775 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2575776 2575777 . + . intron_id 2 ; splice_site "GT" KQ414615.1 exonerate:protein2genome:local intron 2575776 2575859 . + . intron_id 2 KQ414615.1 exonerate:protein2genome:local splice3 2575858 2575859 . + . intron_id 1 ; splice_site "ag" KQ414615.1 exonerate:protein2genome:local cds 2575860 2576043 . + . KQ414615.1 exonerate:protein2genome:local exon 2575860 2576043 . + . insertions 0 ; deletions 3 KQ414615.1 exonerate:protein2genome:local splice5 2576044 2576045 . + . intron_id 3 ; splice_site "gt" KQ414615.1 exonerate:protein2genome:local intron 2576044 2576111 . + . intron_id 3 KQ414615.1 exonerate:protein2genome:local splice3 2576110 2576111 . + . intron_id 2 ; splice_site "AG" KQ414615.1 exonerate:protein2genome:local cds 2576112 2576249 . + . KQ414615.1 exonerate:protein2genome:local exon 2576112 2576249 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local similarity 2575369 2576249 571 + . alignment_id 1 ; Query CbirOr151 ; Align 2575369 1 174 ; Align 2575624 60 150 ; Align 2575861 111 12 ; Align 2575873 118 171 ; Align 2576112 175 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr151 Target: KQ414615.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold33, whole genome shotgun sequence Model: protein2genome:local Raw score: 378 Query range: 255 -> 396 Target range: 2576498 -> 2577177 256 : PheCysAspTyrMetGluThrIlePheSerProMetLeuPheLeuGlnThrLeuAl : 274 ||||||||| ! |||||| ||| !||||||.!!|||||||||:!!.! PheCysAspAsnMetGluLysAsnPheHisLeuMetLeuLeuLeuGlnThrMetTh 2576499 : TTTTGTGATAAtatggaaaagaattttcaccTAATGCTCCTTTTACAAACTATGAC : 2576553 275 : aSerSerLeuIleIleCysLeuValGlyPheGlnIleThrAspAlaHisIle >> : 292 !|||||||||!!:||||||!!!||||||||||||:!!:!! !!.! !::: rSerSerLeuMetIleCysPheValGlyPheGlnValSerThrValSerVal-+ 2576554 : CAGTAGTCTTATGATTTGTTTCGTCGGATTTCAAGTTTCGACCGTAAGCgtgat.. : 2576609 293 : >> Target Intron 1 >>>> ThrAlaAsnAlaIleSerLysLeuIleLysT : 302 77 bp ||| !!..! ! !||||||:::||||||: ++ThrLeuThrGluGlnSerLysValIleLysP 2576610 : .......................agACACTAACAGAACAATctaaagtaattaaat : 2576714 303 : yrPheSerTyrLeuLeuMetAlaLeuPheGlnLeuLeuLeuPheCysIleProGly : 320 :: |||:!!|||:!!:!!...||||||||||||||||||||||||.!!|||||| heAlaSerHisLeuIleValThrLeuPheGlnLeuLeuLeuPheCysPheProGly 2576715 : ttgcttcTCACTTAATCGTGAcgctttttcaattattactcTTTTGTTTCCCTGGG : 2576768 321 : AspAlaLeuIleAspGlu >>>> Target Intron 2 >>>> SerSerThr : 329 ||| !|||||| :!! 69 bp |||! !!:! AspMetLeuIleArgGln++ ++SerPheSer 2576769 : GATATGCTAATCCGACAGgt.........................agAGTTTCAGT : 2576864 330 : IleSerArgThrLeuTyrThrIleAspTrpTyrGluLeuProValLeuPheLysIl : 348 ||||||! !.!! !|||:!!|||.!.|||! !:!!||||||..!!!!.!!||| IleSerThrAlaAlaTyrSerIleGlnTrpCysGlnLeuProThrPheLeuLysAs 2576865 : ATAAGTACAGCTGCATATTCAATACAGTGGTGTCAACTGCCAACTTTTCTTAAAGA : 2576921 349 : eGluValCysLeuLeuMetLeuArgSerGlnLysSerSerLysIleThrAlaGlyL : 367 !|||||||||:!!:!!!!:||||||||||||!:!|||||| ! ||||||||||||| pGluValCysMetIleIleLeuArgSerGlnArgSerSerTyrIleThrAlaGlyL 2576922 : CGAAGTATGCATGATTATACTACGTTCTCAAAGATCTAGCTACATTACTGCGGGAA : 2576978 368 : ysPheTyrValMetHisLeuGluAsnPheAsnAla >>>> Target Intron : 379 ||.!.||||||||||||||||||||||||...||| 110 bp ysIleTyrValMetHisLeuGluAsnPheThrAla++ 2576979 : AGATATATGTGAtgcatttggaaaatttcaccgcggt................... : 2577016 380 : 3 >>>> ValLeuSerThrAlaValSerTyrPheMetLeuLeuArgSerPheAsn : 394 :!!|||||||||||| !||||||||||||:!!|||!:!||||||||| ++IleLeuSerThrAlaCysSerTyrPheMetMetLeuGlnSerPheAsn 2577017 : ......agATACTCAGTACTGCATGTTCATACTTTATGATGCTTCAAAGCTTCAAT : 2577169 395 : SerAsp : 396 |||!!: SerGlu 2577170 : TCAGAA : 2577177 vulgar: CbirOr151 255 396 . KQ414615.1 2576498 2577177 + 378 M 36 108 5 0 2 I 0 73 3 0 2 M 35 105 5 0 2 I 0 65 3 0 2 M 52 156 5 0 2 I 0 106 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414615.1 exonerate:protein2genome:local gene 2576499 2577177 378 + . gene_id 2 ; sequence CbirOr151 ; gene_orientation + KQ414615.1 exonerate:protein2genome:local cds 2576499 2576606 . + . KQ414615.1 exonerate:protein2genome:local exon 2576499 2576606 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2576607 2576608 . + . intron_id 1 ; splice_site "at" KQ414615.1 exonerate:protein2genome:local intron 2576607 2576683 . + . intron_id 1 KQ414615.1 exonerate:protein2genome:local splice3 2576682 2576683 . + . intron_id 0 ; splice_site "AG" KQ414615.1 exonerate:protein2genome:local cds 2576684 2576788 . + . KQ414615.1 exonerate:protein2genome:local exon 2576684 2576788 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2576789 2576790 . + . intron_id 2 ; splice_site "GT" KQ414615.1 exonerate:protein2genome:local intron 2576789 2576857 . + . intron_id 2 KQ414615.1 exonerate:protein2genome:local splice3 2576856 2576857 . + . intron_id 1 ; splice_site "AG" KQ414615.1 exonerate:protein2genome:local cds 2576858 2577013 . + . KQ414615.1 exonerate:protein2genome:local exon 2576858 2577013 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2577014 2577015 . + . intron_id 3 ; splice_site "gt" KQ414615.1 exonerate:protein2genome:local intron 2577014 2577123 . + . intron_id 3 KQ414615.1 exonerate:protein2genome:local splice3 2577122 2577123 . + . intron_id 2 ; splice_site "AG" KQ414615.1 exonerate:protein2genome:local cds 2577124 2577177 . + . KQ414615.1 exonerate:protein2genome:local exon 2577124 2577177 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local similarity 2576499 2577177 378 + . alignment_id 2 ; Query CbirOr151 ; Align 2576499 256 108 ; Align 2576684 292 105 ; Align 2576858 327 156 ; Align 2577124 379 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr143 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 312 -> 372 Target range: 204763 -> 204943 313 : LeuAsnAsnLysSerLysGluIleGlyLeuAlaThrTyrAsnCysAlaTrpTyrAsnL : 332 |||:::! ||||||:!!|||:!! !:!!|||.!!|||.!.|||! !|||! |||| LeuSerIleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnL 204764 : ttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATT : 204821 333 : euLysProLysAspSerArgValLeuLeuPheIleIleLeuArgSerGlnLysGlnLe : 351 ||||| !!!!. ! :!!!:! !|||:!!!!.|||!!: !|||:!!|||!:!! !|| euLysSerAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLe 204822 : TGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCT : 204878 352 : uThrLeuThrAlaGlyLysMetMetAspLeuSerLeuGlnSerPheAlaSerIleMet : 370 | !|||||||||||||||:::... ::!!!!:!!! !!!!|||..!!:!:!!! uCysLeuThrAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsnValThr 204879 : CTGTTTAACCGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTCACT : 204935 371 : AsnIle : 372 .!.:!! GlnLeu 204936 : CAGCTA : 204943 vulgar: CbirOr143 312 372 . KQ414617.1 204763 204943 + 126 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204764 204943 126 + . gene_id 1 ; sequence CbirOr143 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204764 204943 . + . KQ414617.1 exonerate:protein2genome:local exon 204764 204943 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204764 204943 126 + . alignment_id 1 ; Query CbirOr143 ; Align 204764 313 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr142CTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 311 -> 365 Target range: 204763 -> 204925 312 : LeuAsnAsnLysSerLysAlaIleGlyAlaAlaAlaTyrAsnSerLeuTrpTyrAsnL : 331 |||:::! ||||||:!!! !:!! !!.!|||||||||.!.!!! !|||! |||| LeuSerIleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnL 204764 : ttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATT : 204821 332 : euLysProLysAspSerArgValLeuLeuPheMetIleLeuArgSerGlnLysGlnLe : 350 ||||| !!!!. ! :!!!:! !|||:!!!!.!!:!!: !|||:!!|||!:!! !|| euLysSerAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLe 204822 : TGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCT : 204878 351 : uThrLeuThrAlaGlyLysMetMetAspLeuSerLeuGlnSerPhe : 365 | !|||||||||||||||:::... ::!!!!:!!! !!!!||| uCysLeuThrAlaGlyLysLeuPheProMetThrMetLeuThrPhe 204879 : CTGTTTAACCGcaggaaaattatttcctatGACGATGCTAACGTTT : 204925 vulgar: CbirOr142CTE 311 365 . KQ414617.1 204763 204925 + 103 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204764 204925 103 + . gene_id 1 ; sequence CbirOr142CTE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204764 204925 . + . KQ414617.1 exonerate:protein2genome:local exon 204764 204925 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204764 204925 103 + . alignment_id 1 ; Query CbirOr142CTE ; Align 204764 312 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr147PSE Target: KQ414667.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold102, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 801 Query range: 0 -> 328 Target range: 805202 -> 801463 1 : LeuLeuSerMetSerIleAlaMetThrIleHisAlaSerTyrLysMetAspAspValA : 20 :!!:!! !||||||||||||:!!||| ! !!!.!! !:!!!!.!!:||||||:!!| ValValValMetSerIleAlaValThrAlaAspValIleHisAsnIleAspAspLeuA 805202 : GTGGTGGTGATGTCGATCGCGGTGACGGCCGACGTGATCCACAATATCGACGATTTGG : 805145 21 : spGluMetThrGluLeuIleLeuSerCysCysValCysTyrLeuSerLeuIleArgVa : 39 ||||| !||||||! ! |||! !||| !.!! !||||||!!!:!!:!!|||:! spGluAlaThrGluCysAlaLeuIleCysThrAlaPheTyrLeuCysValValArgMe 805144 : ACGAAGCGACCGAGTGTGCGTTGATTTGCACAGCATTTTACCTTTGCGTTGTTCGCAT : 805088 40 : lValValPheSerIleHisGlnLysGluMetLeuTyrValIleGluThrMetArgAsn : 58 !||||||!:!:!!||||||||||||!!:||||||||||||:!:.!.|||||||||! ! tValValTyrAlaIleHisGlnLysAspMetLeuTyrValValAsnThrMetArgIle 805087 : GGTGGTGTACGCGATTCATCAGAAAGATATGCTTTACGTAGTGAACACAATGAGGATC : 805031 59 : AspTrpIleGlySerSerTyrGluGluArgAlaIleLeuArgAsnLysCysLeuPheA : 78 ||||||! !! !|||||| ! |||!!:|||!.!|||||| !.!.||| :!!|||| AspTrpThrGluSerSerLysGluAspArgValIleLeuAlaGluLysThrMetPheA 805030 : GATTGGACTGAATCTTCAAAAGAGGATCGTGTTATTCTAGCGGAGAAAACGATGTTCG : 804971 79 : laTyrArgLeuAlaLysCysPheIleThrMetValMetGlyIleAlaThrLeuPheAl : 97 ||!:!||||||||||||! !||||||!:!! ||| !.!! ! !..!:!!||| laPheArgLeuAlaLysTyrPheIleSerThrValAlaAlaThrIleValMetPheMe 804970 : CCTTTCGTCTTGCCAAGTACTTTATCAGTACCGTGGCTGCAACTATCGTGATGTTCAT : 804914 98 : aLeuGluProIlePheLys >>>> Target Intron 1 >>>> MetAsnPheL : 107 !! ! ||||||.!.:!! 728 bp !!: !! ! | tCysIleProIleLeuGlu++ ++IleTyrValL 804913 : GTGCATTCCGATTCTAGAGgt.........................agATTTACGTGC : 804156 108 : euSerAspValGluArgThrPheProPheHisTyrIleTyrPheAsnGlnThrAlaSe : 126 ||.!! ! ! !:!! ! ! ! !|||.!!!:!.!!|||||||||!.!|| euGlyLysAspLysValLeuProPheArgGlyTyrPhePheLeuAsnGlnThrValSe 804155 : TTGGTAAGGACAAAGTGCTCCCATTCCGAGGTTACTTCTTCCTCAATCAAACCGTGTC : 804099 127 : rProIlePheGluCysLeuTyrPheLeuAspThrIleAlaGlyLeuSerThrValCys : 145 ||||||||||||||||||||||.!.!!!:!!..!! !|||||| !! ! !! ! rProIlePheGluCysLeuTyrLeuPheAsnValThrAlaGlyGlyPheGlyGlyThr 804098 : GCCGATCTTCGAGTGCTTGTACCTGTTCAACGTGACCGCTGGTGGATTCGGCGGTACG : 804042 146 : ThrIleSerSerAlaThrSerPheAsnLeuValAlaValIleHisGlySerAlaLysP : 165 ! !|||:!!|||..!||||||||||||||||||!.!:!!!!:|||||||||||||||| MetIleAlaSerCysThrSerPheAsnLeuValValIleMetHisGlySerAlaLysP 804041 : ATGATCGCCAGTTGCACCAGTTTCAATCTGGTGGTAATAATGCACGGCTCGGCCAAGT : 803982 166 : heAlaIleLeuGlnArgArgLeuGluThrValAsnArgAsnAspProAspIleAspAr : 184 |||||:!!|||!:!||||||||||||.!!:!!!:! !!!!.||||||:!! ! !! heAlaValLeuArgArgArgLeuGluAlaLeuSerGlyLysAspProAsnSerThrTh 803981 : TTGCTGTTCTACGGAGAAGATTGGAGGCTCTCAGCGGCAAGGATCCTAATTCTACTAC : 803925 185 : gValIleValAsnCysIleArgArgHisGlnAspAlaIle{Al} >>>> Target : 198 !|||!!:! !:!!! :!:! !|||||||||!!:||||||{! } 69 rValMetGlyAspLeuValIleArgHisGlnGluAlaIle{Gl}++ 803924 : TGTTATGGGGGATTTAGTGATTCGCCACCAGGAAGCAATA{GA}gt............ : 803879 199 : Intron 2 >>>> {a}PheAlaAspAlaLeuGluSerValLeuAsnLeuLeuAlaL : 212 6 bp {!}!:!|||||||||||||||!!!:!!:!!|||:!!||||||| ++{u}TyrAlaAspAlaLeuGluArgIleIleAsnValLeuAlaL 803878 : .............ag{G}TACGCAGATGCACTGGAAAGGATCATAAATGTTCTGGCTT : 803145 213 : euGlyGlnPheValLeuSerIleGlyLeuValCysPheAlaGlyPheGlnIleThrSe : 231 ||||||||||||||:!!|||! !||||||:!!|||||||||||||||||||||||||| euGlyGlnPheValIleSerThrGlyLeuIleCysPheAlaGlyPheGlnIleThrSe 803144 : TGGGACAATTCGTCATTAGCACAGGTCTGATCTGCTTCGCGGGATTCCAGATCACCTC : 803088 232 : r >>>> Target Intron 3 >>>> MetLeuGlnAsnLysValGlnCysLeuL : 241 | 61 bp |||:!!:!!:!!|||! !!:! :!!| r++ ++MetMetGluAspLysGlyArgLeuMetL 803087 : Ggt.........................agATGATGGAGGATAAAGGACGGCTGATGA : 802997 242 : ysTyrSerGlyPheLeuCysAlaThrIleLeuGluLeuPheMetPheSerSerSerGl : 260 |||||||| !|||||| !:!!.!!||||||||||||||||||||||||! !||||| ysTyrSerThrPheLeuAsnSerAlaIleLeuGluLeuPheMetPheSerPheSerGl 802996 : AATATTCCACCTTCTTGAACTCCGCCATTCTCGAGCTGTTCATGTTCAGCTTCAGCGG : 802940 261 : yAsnGluLeuIleIleGlu >>>> Target Intron 4 >>>> SerAspAlaV : 270 ||||! |||||| !||| 1119 bp |||||||||| yAsnGlyLeuIleAspGlu++ ++SerAspAlaV 802939 : AAACGGCCTGATAGACGAGgt.........................agAGCGACGCGG : 801791 271 : alSerGluSerAlaTyrArgSerAspTrpIleGlyGlyThrPheSerArgSerLeuHi : 289 ||.!!|||||||||||| !!|||! |||||||||.!! !||||||!:!||||||!! alGlyGluSerAlaTyrGlySerGlyTrpIleGlySerArgPheSerGlnSerLeuGl 801790 : TAGGCGAGTCAGCTTATGGCAGCGGATGGATCGGTAGTCGTTTCTCTCAGAGTCTTCA : 801734 290 : sIleMetMetIleArgSerArgIleProSerArgValThrValGlyLysPheCysAsp : 308 .|||||||||!!:|||||||||||||||!!!!:!:!!|||!.!!.!||||||! !..! nIleMetMetMetArgSerArgIleProCysLysIleThrAlaAlaLysPheTyrSer 801733 : GATCATGATGATGCGCTCGAGGATACCATGCAAGATAACCGCCGCTAAATTCTACAGC : 801677 309 : ValSerLeuArgSerPheThrGln >>>> Target Intron 5 >>>> ValLe : 318 :!!||||||..!||||||:!!:!! 151 bp ||||| MetSerLeuGluSerPheSerLys++ ++ValLe 801676 : ATGTCCTTGGAGAGCTTCTCGAAGgt.........................agGTACT : 801496 319 : uSerThrSerPheSerTyrLeuMetValLeu : 328 |||||||||||||||||||!!!! !|||||| uSerThrSerPheSerTyrPheThrValLeu 801495 : CAGCACGTCTTTCTCCTACTTCACGGTCCTC : 801464 vulgar: CbirOr147PSE 0 328 . KQ414667.1 805202 801463 - 801 M 103 309 5 0 2 I 0 724 3 0 2 M 94 282 S 0 2 5 0 2 I 0 692 3 0 2 S 1 1 M 33 99 5 0 2 I 0 57 3 0 2 M 35 105 5 0 2 I 0 1115 3 0 2 M 50 150 5 0 2 I 0 147 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414667.1 exonerate:protein2genome:local gene 801464 805202 801 - . gene_id 1 ; sequence CbirOr147PSE ; gene_orientation + KQ414667.1 exonerate:protein2genome:local cds 804894 805202 . - . KQ414667.1 exonerate:protein2genome:local exon 804894 805202 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 804892 804893 . - . intron_id 1 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 804166 804893 . - . intron_id 1 KQ414667.1 exonerate:protein2genome:local splice3 804166 804167 . - . intron_id 0 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 803882 804165 . - . KQ414667.1 exonerate:protein2genome:local exon 803882 804165 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 803880 803881 . - . intron_id 2 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 803186 803881 . - . intron_id 2 KQ414667.1 exonerate:protein2genome:local splice3 803186 803187 . - . intron_id 1 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 803086 803185 . - . KQ414667.1 exonerate:protein2genome:local exon 803086 803185 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 803084 803085 . - . intron_id 3 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 803025 803085 . - . intron_id 3 KQ414667.1 exonerate:protein2genome:local splice3 803025 803026 . - . intron_id 2 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 802920 803024 . - . KQ414667.1 exonerate:protein2genome:local exon 802920 803024 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 802918 802919 . - . intron_id 4 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801801 802919 . - . intron_id 4 KQ414667.1 exonerate:protein2genome:local splice3 801801 801802 . - . intron_id 3 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801651 801800 . - . KQ414667.1 exonerate:protein2genome:local exon 801651 801800 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 801649 801650 . - . intron_id 5 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801500 801650 . - . intron_id 5 KQ414667.1 exonerate:protein2genome:local splice3 801500 801501 . - . intron_id 4 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801464 801499 . - . KQ414667.1 exonerate:protein2genome:local exon 801464 801499 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local similarity 801464 805202 801 - . alignment_id 1 ; Query CbirOr147PSE ; Align 805203 1 309 ; Align 804166 104 282 ; Align 803185 199 99 ; Align 803025 232 105 ; Align 801801 267 150 ; Align 801500 317 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr146 Target: KQ414667.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold102, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 879 Query range: 7 -> 381 Target range: 806021 -> 801463 8 : AspGluGluTyrAspLysLeuIleArgProIleLeuValIleSerLysLeuIleAlaV : 27 :!!:!!|||||||||:!!|||||||||||||||:!!:!!! !:!!|||:!!|||:!!: AsnLysGluTyrAspGluLeuIleArgProIleMetLeuThrAlaLysIleIleSerI 806021 : AACAAGGAATACGATGAACTGATCAGACCCATCATGTTAACCGCAAAGATCATTTCCA : 805964 28 : alTrpProLeuLysGluAspArgProPheSerAlaThrValPheArgIleCysHisVa : 46 !!||||||||| !|||:!!!!! !! .!!|||! !:!!||||||! !! !|||:! leTrpProLeuAlaGluAsnSerAlaThrGlyAlaIleLeuPheArgArgPheHisLe 805963 : TCTGGCCGTTGGCAGAGAATAGCGCTACGGGGGCTATATTGTTCAGGAGATTCCACTT : 805907 47 : lValPheLeuLeuPheMet >>>> Target Intron 1 >>>> LeuLeuSerL : 56 !:!!! !:!!!!!|||:!! 684 bp :!!:!! !: uLeuCysMetPhePheLeu++ ++ValValValM 805906 : GCTCTGCATGTTTTTTCTGgt.........................agGTGGTGGTGA : 805193 57 : euSerIleAlaLeuThrIleAspIlePheTyrAsnThrAsnAspValAspGluValAs : 75 !!|||||||||:!!||| !|||:!:.!!:!!|||! !:!!|||:!!||||||!.!!. etSerIleAlaValThrAlaAspValIleHisAsnIleAspAspLeuAspGluAlaTh 805192 : TGTCGATCGCGGTGACGGCCGACGTGATCCACAATATCGACGATTTGGACGAAGCGAC : 805136 76 : nGluArgIleLeuPheGlyCysValCysTyrLeuSerValIleArgValIleValPhe : 94 !||| !! |||.!! !! !.!! !||||||!!!|||:!!|||:!!:!:|||!:! rGluCysAlaLeuIleCysThrAlaPheTyrLeuCysValValArgMetValValTyr 805135 : CGAGTGTGCGTTGATTTGCACAGCATTTTACCTTTGCGTTGTTCGCATGGTGGTGTAC : 805079 95 : SerPheHisGlnLysAspIleLeuTyrValIleGluAlaMetArgAsnAspTrpIleG : 114 :!!.!!||||||||||||!!:|||||||||:!:.!..!!||||||! !||||||! !! AlaIleHisGlnLysAspMetLeuTyrValValAsnThrMetArgIleAspTrpThrG 805078 : GCGATTCATCAGAAAGATATGCTTTACGTAGTGAACACAATGAGGATCGATTGGACTG : 805019 115 : lySerSerTyrGluGluArgAlaIleLeuArgAsnLysCysLeuLeuAlaTyrArgLe : 133 !|||||| ! |||!!:|||!.!|||||| !.!.||| :!!!!!|||!:!||||| luSerSerLysGluAspArgValIleLeuAlaGluLysThrMetPheAlaPheArgLe 805018 : AATCTTCAAAAGAGGATCGTGTTATTCTAGCGGAGAAAACGATGTTCGCCTTTCGTCT : 804962 134 : uAlaLysTyrPheIleThrValIleValGlyAsnGlyPheValTyrValLeuValPro : 152 ||||||||||||||||!:!..!:!:!.!!.!!.! ! ! :!!!:!:!!! !:!!||| uAlaLysTyrPheIleSerThrValAlaAlaThrIleValMetPheMetCysIlePro 804961 : TGCCAAGTACTTTATCAGTACCGTGGCTGCAACTATCGTGATGTTCATGTGCATTCCG : 804905 153 : IlePheGlu >>>> Target Intron 2 >>>> MetAsnPheLeuSerAspVa : 162 |||.!.||| 728 bp !!: !! ! |||.!! ! IleLeuGlu++ ++IleTyrValLeuGlyLys-- 804904 : ATTCTAGAGgt.........................agATTTACGTGCTTGGTAAG-- : 804147 163 : lGluArgThrLeuProPheHisGlyTyrPhePheAlaAsnGlnThrValSerProIle : 181 !!:!:!..!|||||||||!..|||||||||||| !||||||||||||||||||||| -AspLysValLeuProPheArgGlyTyrPhePheLeuAsnGlnThrValSerProIle 804146 : -GACAAAGTGCTCCCATTCCGAGGTTACTTCTTCCTCAATCAAACCGTGTCGCCGATC : 804093 182 : TyrGluTyrLeuTyrValValAspAlaIleGlyGlyLeuSerAlaGlyTrpThrValA : 201 !:!|||! !||||||:!! !!:!!!.!! !!.!||| !! !!.!||| !! !:!!| PheGluCysLeuTyrLeuPheAsnValThrAlaGlyGlyPheGlyGlyThrMetIleA 804092 : TTCGAGTGCTTGTACCTGTTCAACGTGACCGCTGGTGGATTCGGCGGTACGATGATCG : 804033 202 : laSerAlaThrSerPheThrLeuIleValAlaIleHisGlySerValLysPheMetMe : 220 |||||..!|||||||||!.!|||:!:||| !!!:|||||||||!.!|||||| :! laSerCysThrSerPheAsnLeuValValIleMetHisGlySerAlaLysPheAlaVa 804032 : CCAGTTGCACCAGTTTCAATCTGGTGGTAATAATGCACGGCTCGGCCAAGTTTGCTGT : 803976 221 : tLeuGlnArgArgLeuGluThrIleLysArgAspAspProAspValAspArgValIle : 239 :|||!:!||||||||||||.!!:!!!.. !! ! ||||||:!! ! !! !|||!!: lLeuArgArgArgLeuGluAlaLeuSerGlyLysAspProAsnSerThrThrValMet 803975 : TCTACGGAGAAGATTGGAGGCTCTCAGCGGCAAGGATCCTAATTCTACTACTGTTATG : 803919 240 : AlaAsnCysIleArgArgHisGlnAspAlaIle{Th} >>>> Target Intron : 251 !.!:!!! :!:! !|||||||||!!:||||||{ } 696 bp GlyAspLeuValIleArgHisGlnGluAlaIle{Gl}++ 803918 : GGGGATTTAGTGATTCGCCACCAGGAAGCAATA{GA}gt................... : 803879 252 : 3 >>>> {r}PheAlaAspAlaPheGluArgIleSerAsnLeuLeuValLeuGlyGl : 267 {!}!:!|||||||||.!.|||||||||! !|||:!!|||!.!|||||||| ++{u}TyrAlaAspAlaLeuGluArgIleIleAsnValLeuAlaLeuGlyGl 803878 : ......ag{G}TACGCAGATGCACTGGAAAGGATCATAAATGTTCTGGCTTTGGGACA : 803139 268 : nPheValThrSerIleGlyLeuValCysPheAlaGlyPheGlnLeuAlaIle >>>> : 285 |||||||! !|||! !||||||:!!||||||||||||||||||:!!.!! nPheValIleSerThrGlyLeuIleCysPheAlaGlyPheGlnIleThrSer++ 803138 : ATTCGTCATTAGCACAGGTCTGATCTGCTTCGCGGGATTCCAGATCACCTCGgt.... : 803083 286 : Target Intron 4 >>>> MetLeuHisAspAsnIleGlnLeuTyrGlnThrLe : 296 61 bp |||:!!.!.|||!!. !!:!||| :!! !! ++MetMetGluAspLysGlyArgLeuMetLysTyrSe 803082 : .....................agATGATGGAGGATAAAGGACGGCTGATGAAATATTC : 802991 297 : uIlePheLeuIleLeuThrIleLeuGluLeuTyrMetPheSerLeuSerGlyAsnLys : 315 !! !||||||! !! !.!!||||||||||||!:!|||||||||!!!||||||||| rThrPheLeuAsnSerAlaIleLeuGluLeuPheMetPheSerPheSerGlyAsnGly 802990 : CACCTTCTTGAACTCCGCCATTCTCGAGCTGTTCATGTTCAGCTTCAGCGGAAACGGC : 802934 316 : LeuIleIleGlu >>>> Target Intron 5 >>>> SerAspAlaValGlyGl : 325 |||||| !||| 1119 bp ||||||||||||||||| LeuIleAspGlu++ ++SerAspAlaValGlyGl 802933 : CTGATAGACGAGgt.........................agAGCGACGCGGTAGGCGA : 801785 326 : uSerAlaTyrArgSerAspTrpIleGlyGlyThrPheGlyArgSerLeuGlnIleVal : 344 |||||||||| !!|||! |||||||||.!! !|||..!!:!||||||||||||:!! uSerAlaTyrGlySerGlyTrpIleGlySerArgPheSerGlnSerLeuGlnIleMet 801784 : GTCAGCTTATGGCAGCGGATGGATCGGTAGTCGTTTCTCTCAGAGTCTTCAGATCATG : 801728 345 : MetIleArgSerArgIleProSerArgIleThrValGlyLysPheCysAspValSerL : 364 |||!!:|||||||||||||||!!!!:!||||||!.!!.!||||||! !..!:!!|||| MetMetArgSerArgIleProCysLysIleThrAlaAlaLysPheTyrSerMetSerL 801727 : ATGATGCGCTCGAGGATACCATGCAAGATAACCGCCGCTAAATTCTACAGCATGTCCT : 801668 365 : euArgSerPheThrGln >>>> Target Intron 6 >>>> ValLeuSerThr : 373 ||..!||||||:!!:!! 151 bp |||||||||||| euGluSerPheSerLys++ ++ValLeuSerThr 801667 : TGGAGAGCTTCTCGAAGgt.........................agGTACTCAGCACG : 801490 374 : SerPheSerTyrMetMetValLeu : 381 ||||||||||||.!.! !|||||| SerPheSerTyrPheThrValLeu 801489 : TCTTTCTCCTACTTCACGGTCCTC : 801464 vulgar: CbirOr146 7 381 . KQ414667.1 806021 801463 - 879 M 45 135 5 0 2 I 0 680 3 0 2 M 103 309 5 0 2 I 0 724 3 0 2 M 6 18 G 1 0 M 88 264 S 0 2 5 0 2 I 0 692 3 0 2 S 1 1 M 33 99 5 0 2 I 0 57 3 0 2 M 35 105 5 0 2 I 0 1115 3 0 2 M 50 150 5 0 2 I 0 147 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414667.1 exonerate:protein2genome:local gene 801464 806021 879 - . gene_id 1 ; sequence CbirOr146 ; gene_orientation + KQ414667.1 exonerate:protein2genome:local cds 805887 806021 . - . KQ414667.1 exonerate:protein2genome:local exon 805887 806021 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 805885 805886 . - . intron_id 1 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 805203 805886 . - . intron_id 1 KQ414667.1 exonerate:protein2genome:local splice3 805203 805204 . - . intron_id 0 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 804894 805202 . - . KQ414667.1 exonerate:protein2genome:local exon 804894 805202 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 804892 804893 . - . intron_id 2 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 804166 804893 . - . intron_id 2 KQ414667.1 exonerate:protein2genome:local splice3 804166 804167 . - . intron_id 1 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 803882 804165 . - . KQ414667.1 exonerate:protein2genome:local exon 803882 804165 . - . insertions 0 ; deletions 1 KQ414667.1 exonerate:protein2genome:local splice5 803880 803881 . - . intron_id 3 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 803186 803881 . - . intron_id 3 KQ414667.1 exonerate:protein2genome:local splice3 803186 803187 . - . intron_id 2 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 803086 803185 . - . KQ414667.1 exonerate:protein2genome:local exon 803086 803185 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 803084 803085 . - . intron_id 4 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 803025 803085 . - . intron_id 4 KQ414667.1 exonerate:protein2genome:local splice3 803025 803026 . - . intron_id 3 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 802920 803024 . - . KQ414667.1 exonerate:protein2genome:local exon 802920 803024 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 802918 802919 . - . intron_id 5 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801801 802919 . - . intron_id 5 KQ414667.1 exonerate:protein2genome:local splice3 801801 801802 . - . intron_id 4 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801651 801800 . - . KQ414667.1 exonerate:protein2genome:local exon 801651 801800 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 801649 801650 . - . intron_id 6 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801500 801650 . - . intron_id 6 KQ414667.1 exonerate:protein2genome:local splice3 801500 801501 . - . intron_id 5 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801464 801499 . - . KQ414667.1 exonerate:protein2genome:local exon 801464 801499 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local similarity 801464 806021 879 - . alignment_id 1 ; Query CbirOr146 ; Align 806022 8 135 ; Align 805203 53 309 ; Align 804166 156 18 ; Align 804148 163 264 ; Align 803185 252 99 ; Align 803025 285 105 ; Align 801801 320 150 ; Align 801500 370 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr140 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 336 Query range: 202 -> 381 Target range: 1394164 -> 1395911 203 : LeuHisIleGlyGlyGlnIleAsnIleLeuLeuCysTrpLeuMetGluValThrPr : 221 !!!||||||||||||||||||.!.!!:|||! ! ||| ...:::::: PheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAsnIleSerIl 1394165 : TTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaatatttctat : 1394219 222 : oLysGluIleGluThrLys<-><->ArgGluSerIleValAlaIleIleArgLysH : 238 |||:!: :!! !!:! |||.!.!!!! ! !:!!:!!|||!.!!:!| eLysAspGluLysHisArgLeuSerArgAsnThrThrLysSerLeuIleHisArgH 1394220 : taaagATGAGAAACACAGATTATCGAGAAACACCACCAAATCATTAATTCACAGAC : 1394276 239 : isGlnLysIleIleThrLeuSerGluValIleGluAsnLeuTyrSerTyrIleAla : 256 ||!!.::!||||||! ! !|||!!: !||||||!:!|||!:!|||||||||||| isHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIleAla 1394277 : ATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACATTGCT : 1394330 257 : LeuValGlnPheThrSerAsnThrValMetIleCysSerLeuGly{Ph} >>>> : 272 |||:!!|||!:: !!!!||||||:!!:!:||||||!!!:!!|||{||} LeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGly{Ph}-+ 1394331 : TTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGA{TT}ct..... : 1394382 273 : Target Intron 1 >>>> {e}IleIleValThrAlaIleGlyAsnProAspA : 283 464 bp {|}::::::::: !|||.!!..!!.. +-{e}LeuLeuLeu***AlaPheAsnThrAspGlyA 1394383 : ....................at{t}ttattgttgtaGGCATTTAATACAGatggaa : 1394875 284 : laSerGluLysIleMetArgSerLeuLeuPheTyrAlaValThrAsnIleGluAla : 301 ::: ...:::::::::|||||||||||| !!.!! !!.!!!:|||||| snIleLysThrPheIleLysThrLeuLeuPheTyrIleAlaIleThrMetGluAla 1394876 : atataaaaacatttataaaaacattACTCTTTTACATCGCTATCACTATGGAAGCA : 1394929 302 : PheIlePheCysPheAlaGlyGluTyrLeuSerAsnLys >>>> Target Int : 315 |||||||||! !||||||||||||||||||||||||||| 353 b PheIlePheSerPheAlaGlyGluTyrLeuSerAsnLys++ 1394930 : TTCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAAgt............... : 1394973 316 : ron 2 >>>> SerLysAlaIleGlyAsnAlaAlaTyrAsnSerAlaTrpTyrAs : 329 p ||| !:!!|||.!!||||||||||||!:!||| !!|||||| ++SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLe 1394974 : ..........agAGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCT : 1395366 330 : pMetLysIleThrAspArgArgThrPheLeuPheValIleLeuArgSerGlnLysG : 348 !:!! ! ! !||||||!.!! !.!!:!!.!!:!!!!::!!|||||||||!:!! uLeuAspProGlnAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgA 1395367 : TCTGGATCCTCAAGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGAC : 1395423 349 : lnLeuSerPheThrAlaGlyLysMetMetThrLeuSerLeuGluGlyPheThrAsn : 366 :!|||!!!.!!||||||||||||.!.||| !||||||||||||||||||.!!||| rgLeuThrIleThrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsn 1395424 : GATTAACAATCACCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAAT : 1395477 367 : >>>> Target Intron 3 >>>> IleMetLysAlaSerGlySerTyrLeu : 375 387 bp |||:!:|||||||||!.!||||||:!! ++ ++IleLeuLysAlaSerAlaSerTyrIle 1395478 : gt.........................agatcTTAAAGGCTTCTGCATCGTACATA : 1395891 376 : SerValLeuLeuAlaMet : 381 |||||||||! !|||||| SerValLeuTyrAlaMet 1395892 : TCTGTACTGTATGCGATG : 1395911 vulgar: CbirOr140 202 381 . KQ414716.1 1394164 1395911 + 336 M 25 75 G 0 6 M 44 132 S 0 2 5 0 2 I 0 460 3 0 2 S 1 1 M 42 126 5 0 2 I 0 349 3 0 2 M 52 156 5 0 2 I 0 383 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394165 1395911 336 + . gene_id 1 ; sequence CbirOr140 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394165 1394379 . + . KQ414716.1 exonerate:protein2genome:local exon 1394165 1394379 . + . insertions 6 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394380 1394381 . + . intron_id 1 ; splice_site "CT" KQ414716.1 exonerate:protein2genome:local intron 1394380 1394843 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394842 1394843 . + . intron_id 0 ; splice_site "at" KQ414716.1 exonerate:protein2genome:local cds 1394844 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394844 1394970 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394971 1394972 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394971 1395323 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1395322 1395323 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1395324 1395479 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395479 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1395480 1395481 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1395480 1395866 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1395865 1395866 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1395867 1395911 . + . KQ414716.1 exonerate:protein2genome:local exon 1395867 1395911 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394165 1395911 336 + . alignment_id 1 ; Query CbirOr140 ; Align 1394165 203 75 ; Align 1394246 228 132 ; Align 1394845 273 126 ; Align 1395324 315 156 ; Align 1395867 367 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr140 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 286 Query range: 0 -> 201 Target range: 1390523 -> 1392019 1 : MetAlaSerLysArgThrIleAsnArgThrIleGluLeuLeuLeuThrMetPheGl : 19 |||:!! !!!.!:!!:!|||!:!||| !!:!:|||:!! !|||! !:!: !|| MetSerHisAsnLysSerIleSerArgProValGluIleGlyLeuArgLeuThrGl 1390524 : ATGTCGCATAACAAAAGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGG : 1390578 20 : yValTrpProGlyIleSerCysValIleIleTyrArgValPheTrpIleIleThrL : 38 |:!!||||||||| !|||! !! !|||||| !|||||| !||||||||| !: yIleTrpProGlySerSerTyrGluIleIleValArgValThrTrpIleIleLeuM 1390579 : AATTTGGCCAGGTTCATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTA : 1390635 39 : euAlaIleAsnGluPhePheHisTyrArgTyrPheValThrHisLeuSerIleAsp : 56 !!.!!:!! :!!.!.|||!!.|||||||||.!.:!!! !||||||..! !..! etThrValValGlnIlePheGlnTyrArgTyrIleIleLysHisLeuAspGlySer 1390636 : TGACAGTTGTACAAATATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGT : 1390689 57 : AsnLeuPheAspLeuMetAspCysLeuSerSerPheLeuAlaHisValLysLeuTh : 75 |||||| :!!|||!!:||| !!:!!.!!!!! !||| !!:!! ! !||| AsnLeuAlaAsnLeuIleAspSerValGlyThrThrLeuProTyrSerLeuLeuTy 1390690 : AATCTGGCGAACTTAATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTA : 1390746 76 : rValLysIleIleIlePheSerLeuLysGln{Ar} >>>> Target Intron : 86 !||||||:::||||||||| !|||!::{ !} 884 bp rValLysLeuIleIlePheTrpThrLysArg{Gl}++ 1390747 : TgtcaaattaattattttctggaCTAAACGT{GG}gt................... : 1390783 87 : 1 >>>> {g}ThrPheIleGluIleIleLysLeuMetSerGluAspTrpSerAsp : 101 {!} ||| ...::::!! ! !||||||.!.|||||||||:!! ++{y}IlePheGluAsnMetLeuValGlyMetSerAsnAspTrpSerAsn 1390784 : ......ag{a}atattcgaaaatatgtTAGTGGGAATGTCTAACGATTGGAGTAAT : 1391708 102 : SerSerAsnSerAspValAlaLeuAsnLysThrSerSerLysAlaLysLeuSerSe : 120 ||||||:::!!! ! !!! !:!!||| ! !! !|||||||||:!!|||:!!! SerSerSerThrLysPheAspIleAsnAlaMetIleSerLysAlaGluLeuAlaTy 1391709 : TCTTCATCAACGAAATTTGACATAAACGCCATGATAAGTAAAGCTGAACTTGCGTA : 1391765 121 : rArgIleSerAsnGlyLeuIleIleLeuHisThrIleAlaAlaLeuAlaTyrVal< : 139 !||| !|||!!.! !:!!!!:! ! !:!!.!!||||||!.!!!!||||||..! rArgTyrSerLysValIleMetSerThrTyrAlaIleAlaValPheAlaTyrThrS 1391766 : TCGTTATTCGAAGGTAATTATGAGCACATATGCTATTGCCGTTTTCGCTTATACCA : 1391822 140 : -><-><->ValGlyIleLeuLeuAlaAspValAspValThrAspGlnThrValAsp : 154 !!! !.!!:!!! ! !||| !|||! ! ! !!.!. ! !..! erValPhePheGluPheMetArgHisAspAsnAspGlyGluTyrAspLeuLysSer 1391823 : GCGTGTTTTTCGAGTTTATGCGTCACGACAACGACGGCGAATATGATTTAAAGTCT : 1391876 155 : LeuProLeuMetMetLysMetGluTyrProPheValIleAspThrGlnArgGluTy : 173 ! ! !|||:!!|||||||||!!: !||||||!.! ! !!! ! !! ! !|| ArgGluLeuLeuMetLysMetAspLeuProPheAlaTyrTyrLysThrProThrTy 1391877 : CGAGAACTTTTGATGAAAATGGACCTCCCGTTTGCGTATTACAAAACACCGACGTA : 1391933 174 : rArgLeuValLeuValThrGlnPheIleTyrValMetValCysSerTrpGlyAlaG : 192 |!:!! !|||!!!|||..!||||||:!! ! :!!:!!:!! !:!!! !.! !| rGlnTrpValPheValValGlnPheLeuGlnLeuLeuIleAsnAlaSerAlaIleG 1391934 : TCAATGGGTATTTGTTGTACAATTTCTTCAGCTGTTGATAAATGCATCTGCTATTG : 1391990 193 : lyLeuPheAsnAlaLeuLeuIleThrLeu : 201 ||:!!!!.:!!||||||:!!||||||||| lyMetLeuAspAlaLeuIleIleThrLeu 1391991 : GTATGTTAGATGCTTTGATAATTACGTTG : 1392019 vulgar: CbirOr140 0 201 . KQ414716.1 1390523 1392019 + 286 M 85 255 S 0 2 5 0 2 I 0 880 3 0 2 S 1 1 M 52 156 G 0 9 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390524 1392019 286 + . gene_id 2 ; sequence CbirOr140 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1390524 1390780 . + . KQ414716.1 exonerate:protein2genome:local exon 1390524 1390780 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1390781 1390782 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1390781 1391664 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1391663 1391664 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1391665 1392019 . + . KQ414716.1 exonerate:protein2genome:local exon 1391665 1392019 . + . insertions 9 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390524 1392019 286 + . alignment_id 2 ; Query CbirOr140 ; Align 1390524 1 255 ; Align 1391666 87 156 ; Align 1391831 139 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr140 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 235 Query range: 272 -> 381 Target range: 1408509 -> 1409528 273 : IleIleValThrAlaIleGlyAsnProAspAlaSerGluLysIleMetArgSerLe : 291 :!!! :!! !|||:!! !||| !:!!!.!! !:!!! !:!:!!:!:!! !:! LeuThrLeuGlnAlaLeuGlnAsnAsnAsnGlyPheLysMetLeuIleLysPheVa 1408510 : TTAACGTTACAGGCACTACAAAATAATAATGGATTTAAAATGTTGATCAAATTTGT : 1408564 292 : uLeuPheTyrAlaValThrAsnIleGluAlaPheIlePheCysPheAlaGlyGluT : 310 !:!!!:!||| !!.!..! ! !||||||||||||!:!|||||||||||||||| lValTyrTyrMetAlaValCysSerGluAlaPheIleTyrCysPheAlaGlyGluT 1408565 : TGTATATTACATGGCTGTGTGCTCAGAAGCGTTCATATACTGCTTTGCTGGAGAGT : 1408621 311 : yrLeuSerAsnLys >>>> Target Intron 1 >>>> SerLysAlaIleG : 319 |||||!:!! !||| 414 bp |||||| |||| yrLeuAsnIleLys++ ++SerLysLeuIleG 1408622 : ACCTTAATATCAAGgt.........................agagtaaactgattg : 1409062 320 : lyAsnAlaAlaTyrAsnSerAlaTrpTyrAspMetLysIleThrAspArgArgThr : 337 ||:!!.!!||||||.!.! ! !||||||:!!||| ! ! !!!:!!!||| ! lyAspThrAlaTyrGluPheLeuTrpTyrAsnMetHisSerLysGluSerArgLeu 1409063 : gagACACGGCGTATGAATTTCTTTGGTATAATATGCATTCGAAGGAAAGCCGACTT : 1409116 338 : PheLeuPheValIleLeuArgSerGlnLysGlnLeuSerPheThrAlaGlyLysMe : 356 .!.|||.!!||||||||||||||||||||| !!!!!!:|||||| ||||||.. MetLeuLeuValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysPh 1409117 : ATGTTGCTTGTAATACTACGATCACAGAAAGGATTTACtttcacttttggaaaatt : 1409173 357 : tMetThrLeuSerLeuGluGlyPheThrAsn >>>> Target Intron 2 >> : 367 . :::||||||:!!|||.!!|||.!!..! 278 bp eAlaSerLeuSerMetGluSerPheAlaGly++ 1409174 : tgcaagtCTTTCCATGGAAAGTTTTGCAGGCgt....................... : 1409208 368 : >> IleMetLysAlaSerGlySerTyrLeuSerValLeuLeuAlaMet : 381 |||||||||||||||!.!||||||:!!|||||||||||||||||| ++IleMetLysAlaSerAlaSerTyrIleSerValLeuLeuAlaMet 1409209 : ..agattATGAAAGCTTCTGCATCGTATATATCCGTATTGCTCGCAATG : 1409528 vulgar: CbirOr140 272 381 . KQ414716.1 1408509 1409528 + 235 M 42 126 5 0 2 I 0 410 3 0 2 M 52 156 5 0 2 I 0 274 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408510 1409528 235 + . gene_id 3 ; sequence CbirOr140 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408510 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408510 1408635 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408636 1408637 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408636 1409049 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1409048 1409049 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409050 1409205 . + . KQ414716.1 exonerate:protein2genome:local exon 1409050 1409205 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1409206 1409207 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1409206 1409483 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1409482 1409483 . + . intron_id 1 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409484 1409528 . + . KQ414716.1 exonerate:protein2genome:local exon 1409484 1409528 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408510 1409528 235 + . alignment_id 3 ; Query CbirOr140 ; Align 1408510 273 126 ; Align 1409050 315 156 ; Align 1409484 367 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr140 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 229 Query range: 84 -> 276 Target range: 1386354 -> 1387341 85 : GlnArgThrPheIleGluIleIleLysLeuMetSerGluAspTrpSerAspSerSe : 103 .!.||||||||| !! |||:!:! ! !:!:! !||||||!! !:!:!!! !:! AsnArgThrPheTyrGlyIleLeuThrThrValPheGluAspCysAsnAsnTyrAl 1386355 : AACAGAACATTTTATGGCATTCTGACAACCGTATTCGAGGACTGCAATAATTATGC : 1386409 104 : rAsnSerAspValAlaLeuAsnLysThrSerSerLysAlaLysLeuSerSerArgI : 122 !::!!:: ... !!!..!||||||! !||||||||||||| aSerThrValGluAsnLysArgIleMetThrAspLysAlaMetLeuSerSerArgI 1386410 : TTCTAccgttgaaaataaacgaataatgACAGATAAAGCTATGTTGTCTTCTCGta : 1386466 123 : leSerAsnGlyLeuIleIleLeuHisThrIleAlaAlaLeuAlaTyrVal<->Val : 139 |||||||| |||||| ! !:!!|||.!! !|||!.!||| ! :!! leSerAsnPheLeuIleGlyTyrPheSerIleThrPheLeuValTyrSerGlyLeu 1386467 : tctcaaattttttaattggctATTTTTCGATCACGTTCCTTGTATATTCAGGACTT : 1386520 140 : GlyIleLeuLeuAlaAspValAspValThrAspGln<->ThrValAspLeuProLe : 157 !.!:!!:!!||| !|||! !||| !!.!! ! ! :!! ... .. AlaLeuValLeuPheAspGluAspGlnAsnGlyProValSerLysGlnArgLysPh 1386521 : GCTCTAGTATTATTTGATGAAGATCAGAATGGACCGGTTTCCAaacaaaggaaatt : 1386577 158 : uMetMetLysMetGluTyrProPheValIleAspThrGlnArgGluTyrArgLeuV : 176 .:::::::::||||||!:!||||||! ! ! ..!...! !...|||...:::: eLeuIleArgMetGluPheProPheGluAlaThrValSerProArgTyrGluIleI 1386578 : tttaattagaatggAATTTCCTTTCGAAGCTACAGTCTCTCCACgttatgaaatta : 1386634 177 : alLeuValThrGlnPheIleTyrValMetValCysSerTrpGlyAlaGlyLeuPhe : 194 ::||||||...|||||||||::: !! !!::||||||!.! !! leLeuValValGlnPheIlePheGluAlaPheIleValTyrGlyAlaAlaThrSer 1386635 : ttctagttgtacaatttatattcgaagcATTTATAGTTTATGGAGCAGCTACATCG : 1386688 195 : AsnAlaLeuLeuIleThrLeu >>>> Target Intron 1 >>>> ThrLeu : 203 ! ||||||:!! !..!||| 399 bp ! !||| IleAlaLeuIleAlaValLeu++ ++IleLeu 1386689 : ATAGCCCTAATTGCAGTACTAgt.........................agATATTA : 1387114 204 : HisIleGlyGlyGlnIleAsnIleLeuLeuCysTrpLeuMetGluValThrProLy : 222 |||:!!||||||||||||:!!:!!|||! ! :!!! !!::!!:!!! !!! HisValGlyGlyGlnIleAspLeuLeuCysGlnAsnMetArgAspIleSerArgAs 1387115 : CATGTTGGTGGTCAGATCGATTTATTGTGTCAAAACATGAGAGACATTTCTCGTAA : 1387171 223 : sGluIleGlu<-><->ThrLysArgGluSerIleValAlaIleIleArgLysHisG : 239 ..!. :!! !!:!!!:! !!!!||| !! !:!!:!! !!:!|||| nHisGluLysLysValProGlnLysLeuThrIleLysAspValValValArgHisG 1387172 : TCATGAGAAGAAAGTACCGCAAAAACTGACAATAAAGGATGTCGTTGTTAGGCATC : 1387228 240 : lnLysIleIleThrLeuSerGluValIleGluAsnLeuTyrSerTyrIleAlaLeu : 257 ||::!|||||| !||||||:!! !||||||!..:!!!:!!!!||||||:!!||| lnArgIleIleArgLeuSerLysAsnIleGluThrValPheThrTyrIleSerLeu 1387229 : AACGAATTATACGACTGTCTAAAAATATCGAGACAGTTTTTACTTATATATCATTA : 1387282 258 : ValGlnPheThrSerAsnThrValMetIleCysSerLeuGlyPheIleIleValTh : 276 |||||| |||||| :!!:!:||||||! !:!!.!!|||:!!:!:||||| CysGlnPheLeuSerAsnMetLeuValIleCysPheIleSerPheValLeuValTh 1387283 : TgccaatttttatcgaatatgcTGGTTATCTGTTTCATAAGCTTCGTTTTGGTAAC : 1387339 277 : r : 276 | r 1387340 : C : 1387341 vulgar: CbirOr140 84 276 . KQ414716.1 1386354 1387341 + 229 M 54 162 G 0 3 M 13 39 G 0 3 M 50 150 5 0 2 I 0 395 3 0 2 M 24 72 G 0 6 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1386355 1387341 229 + . gene_id 4 ; sequence CbirOr140 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1386355 1386711 . + . KQ414716.1 exonerate:protein2genome:local exon 1386355 1386711 . + . insertions 6 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1386712 1386713 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1386712 1387110 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387109 1387110 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387111 1387341 . + . KQ414716.1 exonerate:protein2genome:local exon 1387111 1387341 . + . insertions 6 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1386355 1387341 229 + . alignment_id 4 ; Query CbirOr140 ; Align 1386355 85 162 ; Align 1386520 139 39 ; Align 1386562 152 150 ; Align 1387111 202 72 ; Align 1387189 226 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr140 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 314 -> 381 Target range: 1387619 -> 1387955 315 : SerLysAlaIleGlyAsnAlaAlaTyrAsnSerAlaTrpTyrAspMetLysIleTh : 333 |||:!! !||| !.!.:!:...|||||| |||||||||:!:||| ! SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 334 : rAspArgArgThrPheLeuPheValIleLeuArgSerGlnLysGlnLeuSerPheT : 352 !!!: !||| |||...:::||||||||||||||||||:!!|||! !.!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 353 : hrAlaGlyLysMetMetThrLeuSerLeuGluGlyPheThrAsn >>>> Targe : 367 |||||||||||.!.:!!!.!|||||||||! !.!|||.!!||| hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt.......... : 1387778 368 : t Intron 1 >>>> IleMetLysAlaSerGlySerTyrLeuSerValLeuLeu : 379 135 bp ::::!:|||||||||!.!||||||:!!|||||||||! ! ++MetLeuLysAlaSerAlaSerTyrValSerValLeuHis 1387779 : ...............agatgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTTGCAT : 1387947 380 : AlaMet : 381 |||||| AlaMet 1387948 : GCAATG : 1387955 vulgar: CbirOr140 314 381 . KQ414716.1 1387619 1387955 + 160 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387955 160 + . gene_id 5 ; sequence CbirOr140 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387955 160 + . alignment_id 5 ; Query CbirOr140 ; Align 1387620 315 156 ; Align 1387911 367 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr140 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 314 -> 367 Target range: 1402435 -> 1402594 315 : SerLysAlaIleGlyAsnAlaAlaTyrAsnSerAlaTrpTyrAspMetLysIleTh : 333 |||:!! !|||||||||.!!||||||.!.! ! !|||||||||:!:::: !|| SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerTh 1402436 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAAC : 1402490 334 : rAspArgArgThrPheLeuPheValIleLeuArgSerGlnLysGlnLeuSerPheT : 352 |!!:!!!!:! !.!.:!! !||||||||||||||||||||| !!!!!!|||| rGluSerGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheT 1402491 : TGAAAGCCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACGTtta : 1402547 353 : hrAlaGlyLysMetMetThrLeuSerLeuGluGlyPheThrAsnIle : 367 || ||||||... :::||||||||||||.!!|||||| !:!! hrPheGlyLysPheSerSerLeuSerLeuGluSerPheThrAlaVal 1402548 : cttttggaaaattttcaagtctCTCCTTGGAAAGCTTTACGGCCGTA : 1402594 vulgar: CbirOr140 314 367 . KQ414716.1 1402435 1402594 + 137 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1402436 1402594 137 + . gene_id 6 ; sequence CbirOr140 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1402436 1402594 . + . KQ414716.1 exonerate:protein2genome:local exon 1402436 1402594 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1402436 1402594 137 + . alignment_id 6 ; Query CbirOr140 ; Align 1402436 315 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr144 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 397 Query range: 201 -> 369 Target range: 1394161 -> 1395482 202 : IleLeuHisIleGlyGlyGlnValAspIleLeuArgCysLeuLeuThrAspLeuVa : 220 |||!!!|||||||||||||||:!!!!:!!:|||!:! !||||||:::::: IlePheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAsnIleSe 1394162 : ATATTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaatatttc : 1394216 221 : lSerLysGluAspGlyArgLysArgThrIleValThrThrGlyGluIleIleArgL : 239 |||:!:!!: !!.!!:! !:!!! ! !|||||| !..!:!!|||!.!! rIleLysAspGluLysHisArgLeuSerArgAsnThrThrLysSerLeuIleHisA 1394217 : tattaaagATGAGAAACACAGATTATCGAGAAACACCACCAAATCATTAATTCACA : 1394273 240 : ysHisGlnLysIleIleAsnPheSerGlnAsnValGluAsnLeuTyrThrTyrIle : 257 :!|||!!.::!||||||! ! !|||.!.::!:!!|||!:!|||!:!:!!|||||| rgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIle 1394274 : GACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACATT : 1394327 258 : AlaLeuLeuGlnPheAlaSerAsnThrIleIleIleCysSerLeuGlyPheLeuIl : 276 ||||||:!!|||!:: !!!!||||||:!!:!!||||||!!!:!!||||||||||| AlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGlyPheLeuIl 1394328 : GCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGATTCTTAAT : 1394384 277 : eValCys >>>> Target Intron 1 >>>> AlaIleGlyThrProAspAl : 285 |||| ! 464 bp |||.!!..!||| eValIle++ ++AlaPheAsnThrAspGlyAs 1394385 : AGTAATTgt.........................agGCATTTAATACAGatggaaa : 1394875 286 : aThrGlnGlnIleIleArgSerValLeuPheTyrIleIleThrAsnLeuGluAlaP : 304 ::: ...|||::::::::!|||||||||||| !! !!.!:!!||||||| nIleLysThrPheIleLysThrLeuLeuPheTyrIleAlaIleThrMetGluAlaP 1394876 : tataaaaacatttataaaaacattACTCTTTTACATCGCTATCACTATGGAAGCAT : 1394932 305 : heIlePheCysPheAlaGlyGluTyrLeuAsnAsnLys >>>> Target Intr : 317 ||||||||! !||||||||||||||||||!:!|||||| 353 bp heIlePheSerPheAlaGlyGluTyrLeuSerAsnLys++ 1394933 : TCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAAgt................ : 1394973 318 : on 2 >>>> SerLysAlaIleGlyValAlaAlaTyrAsnSerAlaTrpTyrAsn : 331 ||| !:!!|||.!! !|||||||||!:!||| !!|||||| ! ++SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeu 1394974 : .........agAGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTT : 1395366 332 : LeuLysProGluAspGlyArgIleLeuSerPheIleIleLeuArgSerGlnLysGl : 350 ||| ! |||:!!||| !!!.!|||:!!! !.!!:!!!!::!!|||||||||!:!!: LeuAspProGlnAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgAr 1395367 : CTGGATCCTCAAGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACG : 1395423 351 : nLeuThrLeuThrValGlyLysMetMetAspLeuSerLeuGluTyrPheAlaSerI : 369 !||||||:!!|||!.!||||||.!.|||||||||||||||||| !||||||!:!: gLeuThrIleThrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnV 1395424 : ATTAACAATCACCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATG : 1395480 370 : le : 369 !! al 1395481 : TA : 1395482 vulgar: CbirOr144 201 369 . KQ414716.1 1394161 1395482 + 397 M 77 231 5 0 2 I 0 460 3 0 2 M 38 114 5 0 2 I 0 349 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394162 1395482 397 + . gene_id 1 ; sequence CbirOr144 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394162 1394392 . + . KQ414716.1 exonerate:protein2genome:local exon 1394162 1394392 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394393 1394394 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394393 1394856 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394855 1394856 . + . intron_id 0 ; splice_site "aG" KQ414716.1 exonerate:protein2genome:local cds 1394857 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394857 1394970 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394971 1394972 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394971 1395323 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1395322 1395323 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394162 1395482 397 + . alignment_id 1 ; Query CbirOr144 ; Align 1394162 202 231 ; Align 1394857 279 114 ; Align 1395324 317 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr144 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 244 Query range: 0 -> 202 Target range: 1390523 -> 1392022 1 : MetIleArgLysSerThrIleAsnArgThrThrGluIleMetPheThrLeuPheGl : 19 ||| !.!!!.!.!!:!|||!:!||| !!..!|||||| .!.! !||| !|| MetSerHisAsnLysSerIleSerArgProValGluIleGlyLeuArgLeuThrGl 1390524 : ATGTCGCATAACAAAAGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGG : 1390578 20 : yIleTrpProGlyThrSerCysIleGlnIleArgArgIlePheTrpPheIleThrI : 38 |||||||||||||:!!|||! ! ! ||| !|||:!! !|||.!.||| !! yIleTrpProGlySerSerTyrGluIleIleValArgValThrTrpIleIleLeuM 1390579 : AATTTGGCCAGGTTCATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTA : 1390635 39 : leIleIleValGlnPheLeuHisTyrArgTyrLeuLeuThrHisPheTyrSerAsp : 56 !:! !:!!||||||.!.!!!!!.|||||||||:!!:!!! !|||.!! !!.!!..! etThrValValGlnIlePheGlnTyrArgTyrIleIleLysHisLeuAspGlySer 1390636 : TGACAGTTGTACAAATATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGT : 1390689 57 : AspLeuPheAsnLeuMetAspCysLeuSerSerPheLeuAlaTyrAlaLysValMe : 75 :!!||| ||||||!!:||| !!:!!.!!!!! !||| !!|||::! !:!! AsnLeuAlaAsnLeuIleAspSerValGlyThrThrLeuProTyrSerLeuLeuTy 1390690 : AATCTGGCGAACTTAATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTA : 1390746 76 : tThrLysPheIleValPheTrpPheAsnGln{Ar} >>>> Target Intron : 86 ...|||...|||:::|||||| !!!.!::{ !} 884 bp rValLysLeuIleIlePheTrpThrLysArg{Gl}++ 1390747 : TgtcaaattaattattttctggaCTAAACGT{GG}gt................... : 1390783 87 : 1 >>>> {g}LysPheIleGluThrLeuAlaMetMetAlaGluAspTrpAsnAsp : 101 {!} ||| ... |||!.! |||:!!.!.||||||!:!:!! ++{y}IlePheGluAsnMetLeuValGlyMetSerAsnAspTrpSerAsn 1390784 : ......ag{a}atattcgaaaatatgtTAGTGGGAATGTCTAACGATTGGAGTAAT : 1391708 102 : CysProAsnAsnGluIleSerMetGlnGluThrIleCysLysAlaLysLeuSerAs : 120 ! ! !!:::!..:!!.!!..!!!:.!.! ! !||| !!||||||:!!|||:!! ! SerSerSerThrLysPheAspIleAsnAlaMetIleSerLysAlaGluLeuAlaTy 1391709 : TCTTCATCAACGAAATTTGACATAAACGCCATGATAAGTAAAGCTGAACTTGCGTA : 1391765 121 : pArgIleAlaAsnAlaIleIleIleLeuHisThrLeuSerValValThrTyrGlyT : 139 !||| !:!!!!.!.!|||!!:! ! !:!!.!!:!!:!!||| !!.!!||| !! rArgTyrSerLysValIleMetSerThrTyrAlaIleAlaValPheAlaTyrThrS 1391766 : TCGTTATTCGAAGGTAATTATGAGCACATATGCTATTGCCGTTTTCGCTTATACCA : 1391822 140 : hr<-><-><->ArgIleIleLeuAlaAspValAspIleThrAspSerThrSerIle : 154 :! ..!.!!!!:! ! !||| !||| ! ! !!..! !!.! ! erValPhePheGluPheMetArgHisAspAsnAspGlyGluTyrAspLeuLysSer 1391823 : GCGTGTTTTTCGAGTTTATGCGTCACGACAACGACGGCGAATATGATTTAAAGTCT : 1391876 155 : ProProTyrIleHisLysValGluLeuProPheAspValAsnThrGlnArgAlaTy : 173 ! ! ! !:!: |||:!!!!:|||||||||! ! !!! ! !! !.!!|| ArgGluLeuLeuMetLysMetAspLeuProPheAlaTyrTyrLysThrProThrTy 1391877 : CGAGAACTTTTGATGAAAATGGACCTCCCGTTTGCGTATTACAAAACACCGACGTA : 1391933 174 : rLysMetValLeuIleThrGlnPheThrTyrLeuIleMetCysSerTrpAlaAlaG : 192 |:!! !|||!!!:!!..!|||||| ! ! |||:!:!!: !:!!! ||| !| rGlnTrpValPheValValGlnPheLeuGlnLeuLeuIleAsnAlaSerAlaIleG 1391934 : TCAATGGGTATTTGTTGTACAATTTCTTCAGCTGTTGATAAATGCATCTGCTATTG : 1391990 193 : lyAlaValAsnAlaLeuLeuLeuThrLeuIle : 202 || !:!!:!!||||||:!!:!!||||||:!! lyMetLeuAspAlaLeuIleIleThrLeuVal 1391991 : GTATGTTAGATGCTTTGATAATTACGTTGGTA : 1392022 vulgar: CbirOr144 0 202 . KQ414716.1 1390523 1392022 + 244 M 85 255 S 0 2 5 0 2 I 0 880 3 0 2 S 1 1 M 53 159 G 0 9 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390524 1392022 244 + . gene_id 2 ; sequence CbirOr144 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1390524 1390780 . + . KQ414716.1 exonerate:protein2genome:local exon 1390524 1390780 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1390781 1390782 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1390781 1391664 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1391663 1391664 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1391665 1392022 . + . KQ414716.1 exonerate:protein2genome:local exon 1391665 1392022 . + . insertions 9 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390524 1392022 244 + . alignment_id 2 ; Query CbirOr144 ; Align 1390524 1 255 ; Align 1391666 87 159 ; Align 1391834 140 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr144 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 201 Query range: 274 -> 369 Target range: 1408509 -> 1409208 275 : LeuIleValCysAlaIleGlyThrProAspAlaThrGlnGlnIleIleArgSerVa : 293 |||! :!! |||:!! !!.! !:!!!.! !:!!..!:!:|||!:!! !|| LeuThrLeuGlnAlaLeuGlnAsnAsnAsnGlyPheLysMetLeuIleLysPheVa 1408510 : TTAACGTTACAGGCACTACAAAATAATAATGGATTTAAAATGTTGATCAAATTTGT : 1408564 294 : lLeuPheTyrIleIleThrAsnLeuGluAlaPheIlePheCysPheAlaGlyGluT : 312 |:!!!:!|||!!: !..! !! !||||||||||||!:!|||||||||||||||| lValTyrTyrMetAlaValCysSerGluAlaPheIleTyrCysPheAlaGlyGluT 1408565 : TGTATATTACATGGCTGTGTGCTCAGAAGCGTTCATATACTGCTTTGCTGGAGAGT : 1408621 313 : yrLeuAsnAsnLys >>>> Target Intron 1 >>>> SerLysAlaIleG : 321 ||||||||! !||| 414 bp |||||| |||| yrLeuAsnIleLys++ ++SerLysLeuIleG 1408622 : ACCTTAATATCAAGgt.........................agagtaaactgattg : 1409062 322 : lyValAlaAlaTyrAsnSerAlaTrpTyrAsnLeuLysProGluAspGlyArgIle : 339 || !.!!||||||.!.! ! !|||||||||:!! ! !!:!!!!:.!!|||:!! lyAspThrAlaTyrGluPheLeuTrpTyrAsnMetHisSerLysGluSerArgLeu 1409063 : gagACACGGCGTATGAATTTCTTTGGTATAATATGCATTCGAAGGAAAGCCGACTT : 1409116 340 : LeuSerPheIleIleLeuArgSerGlnLysGlnLeuThrLeuThrValGlyLysMe : 358 :!!! !.!!:!!|||||||||||||||||| !!!!|||...||| ||||||.. MetLeuLeuValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysPh 1409117 : ATGTTGCTTGTAATACTACGATCACAGAAAGGATTTACtttcacttttggaaaatt : 1409173 359 : tMetAspLeuSerLeuGluTyrPheAlaSerIle : 369 . ...||||||:!!||| !||||||.!!:!! eAlaSerLeuSerMetGluSerPheAlaGlyVal 1409174 : tgcaagtCTTTCCATGGAAAGTTTTGCAGGCGTA : 1409208 vulgar: CbirOr144 274 369 . KQ414716.1 1408509 1409208 + 201 M 42 126 5 0 2 I 0 410 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408510 1409208 201 + . gene_id 3 ; sequence CbirOr144 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408510 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408510 1408635 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408636 1408637 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408636 1409049 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1409048 1409049 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409050 1409208 . + . KQ414716.1 exonerate:protein2genome:local exon 1409050 1409208 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408510 1409208 201 + . alignment_id 3 ; Query CbirOr144 ; Align 1408510 275 126 ; Align 1409050 317 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr144 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 169 Query range: 235 -> 316 Target range: 1401105 -> 1401431 236 : IleIleArgLysHisGlnLysIleIleAsnPheSerGlnAsnValGluAsnLeuTy : 254 ...|||..!!:!||||||:!!|||||| !|||:!!:!!!..:!!|||!!.|||!: PheIleAsnArgHisGlnGluIleIleValPheAlaGluArgIleGluLysLeuPh 1401106 : ttcattaACAGACATCAGGAAATTATTGTTTTTGCAGAAAGAATTGAGAAACTTTT : 1401160 255 : rThrTyrIleAlaLeuLeuGlnPheAlaSerAsnThrIleIleIleCysSerLeu{ : 273 !||||||!!:|||||| !|||.!!!.!|||||||||||||||||||||!!!:!!{ eThrTyrMetAlaLeuSerGlnLeuValSerAsnThrIleIleIleCysCysVal{ 1401161 : TACATACATGGCTCTCAGTCAACTTGTGTCCAATACGATAATTATATGTTGCGTA{ : 1401217 274 : Gl} >>>> Target Intron 1 >>>> {y}PheLeuIleValCysAlaIle : 280 ||} 83 bp {|} |||::: |||:!! Gl}-+ ++{y}Lys***IleLeuGlnAlaVal 1401218 : GG}at.........................ag{g}aaataaatattacaggCAGTA : 1401321 281 : GlyThrProAspAlaThrGlnGlnIleIleArgSerValLeuPheTyrIleIleTh : 299 !! ! !:!!!.!..!! ! !:!!:!!!::|||:::|||||||||::::!!! HisIleAspAsnGlyValProLeuLeuLeuLysSerLeuLeuPheTyrValValIl 1401322 : CATATCGACAATGGAGTTCCTCTGTTACTCAaatctcttttattttatgtgGTTAT : 1401378 300 : rAsnLeuGluAlaPheIlePheCysPheAlaGlyGluTyrLeuAsnAsnLys : 316 ! !|||||||||||||||!:!||||||!.!||||||||||||!:!! !||| eCysLeuGluAlaPheIleTyrCysPheValGlyGluTyrLeuSerIleLys 1401379 : TTGTTTAGAAGCGTTTATATACTGCTTTGTCGGAGAATATCTCAGTATCAAG : 1401431 vulgar: CbirOr144 235 316 . KQ414716.1 1401105 1401431 + 169 M 37 111 S 0 2 5 0 2 I 0 79 3 0 2 S 1 1 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401106 1401431 169 + . gene_id 4 ; sequence CbirOr144 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401106 1401218 . + . KQ414716.1 exonerate:protein2genome:local exon 1401106 1401218 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401219 1401220 . + . intron_id 1 ; splice_site "AT" KQ414716.1 exonerate:protein2genome:local intron 1401219 1401301 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1401300 1401301 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1401302 1401431 . + . KQ414716.1 exonerate:protein2genome:local exon 1401302 1401431 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401106 1401431 169 + . alignment_id 4 ; Query CbirOr144 ; Align 1401106 236 111 ; Align 1401303 274 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr144 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 168 Query range: 201 -> 277 Target range: 1387110 -> 1387338 202 : IleLeuHisIleGlyGlyGlnValAspIleLeuArgCysLeuLeuThrAspLeuVa : 220 |||||||||:!!|||||||||:!!|||:!!||| !! !:!!! !|||:!! IleLeuHisValGlyGlyGlnIleAspLeuLeuCysGlnAsnMetArgAspIleSe 1387111 : ATATTACATGTTGGTGGTCAGATCGATTTATTGTGTCAAAACATGAGAGACATTTC : 1387165 221 : lSerLysGluAspGlyArgLysArgThrIleValThrThrGlyGluIleIleArgL : 239 ! !!!!..!.!!: !!:! !! ! !! !:!!|||! ! !!!::!!:!! !! rArgAsnHisGluLysLysValProGlnLysLeuThrIleLysAspValValValA 1387166 : TCGTAATCATGAGAAGAAAGTACCGCAAAAACTGACAATAAAGGATGTCGTTGTTA : 1387222 240 : ysHisGlnLysIleIleAsnPheSerGlnAsnValGluAsnLeuTyrThrTyrIle : 257 :!||||||::!||||||....!.|||:!!|||:!!|||!..:!!!:!||||||||| rgHisGlnArgIleIleArgLeuSerLysAsnIleGluThrValPheThrTyrIle 1387223 : GGCATCAACGAATTATACGACTGTCTAAAAATATCGAGACAGTTTTTACTTATATA : 1387276 258 : AlaLeuLeuGlnPheAlaSerAsnThrIleIleIleCysSerLeuGlyPheLeuIl : 276 :!!|||! |||||| |||||| :!::!!||||||! !:!!.!!|||:!!:! SerLeuCysGlnPheLeuSerAsnMetLeuValIleCysPheIleSerPheValLe 1387277 : TCATTATgccaatttttatcgaatatgcTGGTTATCTGTTTCATAAGCTTCGTTTT : 1387333 277 : eVal : 277 :||| uVal 1387334 : GGTA : 1387338 vulgar: CbirOr144 201 277 . KQ414716.1 1387110 1387338 + 168 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387111 1387338 168 + . gene_id 5 ; sequence CbirOr144 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387111 1387338 . + . KQ414716.1 exonerate:protein2genome:local exon 1387111 1387338 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387111 1387338 168 + . alignment_id 5 ; Query CbirOr144 ; Align 1387111 202 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr144 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 316 -> 369 Target range: 1387619 -> 1387778 317 : SerLysAlaIleGlyValAlaAlaTyrAsnSerAlaTrpTyrAsnLeuLysProGl : 335 |||:!! !||| ! !:!:...|||||| ||||||:!!|||||||||.. SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 336 : uAspGlyArgIleLeuSerPheIleIleLeuArgSerGlnLysGlnLeuThrLeuT : 354 !!!:!.!||||||::: ...|||||||||||||||||||||:!!|||! !|||| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 355 : hrValGlyLysMetMetAspLeuSerLeuGluTyrPheAlaSerIle : 369 ||!.!||||||.!.:!!:!!|||||||||! ||||||!::::: hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: CbirOr144 316 369 . KQ414716.1 1387619 1387778 + 141 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387778 141 + . gene_id 6 ; sequence CbirOr144 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387778 141 + . alignment_id 6 ; Query CbirOr144 ; Align 1387620 317 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr144 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 316 -> 369 Target range: 1402435 -> 1402594 317 : SerLysAlaIleGlyValAlaAlaTyrAsnSerAlaTrpTyrAsnLeuLysProGl : 335 |||:!! !|||||| !.!!||||||.!.! ! !||||||:!!|||::: !! SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerTh 1402436 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAAC : 1402490 336 : uAspGlyArgIleLeuSerPheIleIleLeuArgSerGlnLysGlnLeuThrLeuT : 354 !!:.!!!:!:!!|||! ! !:!!|||||||||||||||||| !!!|||!..| rGluSerGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheT 1402491 : TGAAAGCCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACGTtta : 1402547 355 : hrValGlyLysMetMetAspLeuSerLeuGluTyrPheAlaSerIle : 369 || ||||||... ...|||||||||||| !|||.!!:!!:!! hrPheGlyLysPheSerSerLeuSerLeuGluSerPheThrAlaVal 1402548 : cttttggaaaattttcaagtctCTCCTTGGAAAGCTTTACGGCCGTA : 1402594 vulgar: CbirOr144 316 369 . KQ414716.1 1402435 1402594 + 117 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1402436 1402594 117 + . gene_id 7 ; sequence CbirOr144 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1402436 1402594 . + . KQ414716.1 exonerate:protein2genome:local exon 1402436 1402594 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1402436 1402594 117 + . alignment_id 7 ; Query CbirOr144 ; Align 1402436 317 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr145 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 405 Query range: 198 -> 379 Target range: 1394161 -> 1395911 199 : ValLeuHisAlaGlyGlyGlnIleAspIleLeuArgGluArgLeuLeuGluIleLe : 217 :!!!!!||| !||||||||||||!!:!!:|||!:!:!! !||| ...||| IlePheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAsnIleSe 1394162 : ATATTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaatatttc : 1394216 218 : uSerLysAspLysLysProThrMetSerThrIleThrIleGlySerLeuIleGlnA : 236 ||||||:!!|||! !! !:!:|||! !! !|||! ! !|||||||||!!.| rIleLysAspGluLysHisArgLeuSerArgAsnThrThrLysSerLeuIleHisA 1394217 : tattaaagATGAGAAACACAGATTATCGAGAAACACCACCAAATCATTAATTCACA : 1394273 237 : rgHisGlnAsnIleIleIlePheThrGluLysIleGluSerLeuTyrSerTyrIle : 254 |||||!!....||||||||| !:!!!!:...||||||||||||!:!||||||||| rgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIle 1394274 : GACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACATT : 1394327 255 : AlaLeuAlaGlnPheIleSerAsnThrValValIleCysCysLeuGly{Ph} >> : 271 |||||| !|||!:::!!!!!||||||:!!||||||||||||:!!|||{||} AlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGly{Ph}-+ 1394328 : GCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGA{TT}ct.. : 1394382 272 : >> Target Intron 1 >>>> {e}IleIleValAsnSerIleGlyThrGluG : 281 464 bp {|}::::::::: :!!.!!..!|||!::| +-{e}LeuLeuLeu***AlaPheAsnThrAspG 1394383 : .......................at{t}ttattgttgtaGGCATTTAATACAGatg : 1394872 282 : lySer<->SerMetIleIleArgSerLeuLeuPheTyrValValIleAsnLeuGlu : 298 ||::: ... ...|||::::::||||||||||||:!!!.!|||!.!:!!||| lyAsnIleLysThrPheIleLysThrLeuLeuPheTyrIleAlaIleThrMetGlu 1394873 : gaaatataaaaacatttataaaaacattACTCTTTTACATCGCTATCACTATGGAA : 1394926 299 : AlaPheIlePheCysPheAlaGlyGluTyrLeuSerMetLys >>>> Target : 313 ||||||||||||! !|||||||||||||||||||||! ||| 35 AlaPheIlePheSerPheAlaGlyGluTyrLeuSerAsnLys++ 1394927 : GCATTCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAAgt............ : 1394973 314 : Intron 2 >>>> SerLysMetIleGlyAspAlaAlaTyrGluSerLeuTrpTy : 326 3 bp ||| ! |||.!!:!!|||||||||...|||! !||||| ++SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTy 1394974 : .............agAGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTA : 1395363 327 : rAspLeuThrProSerGluThrArgIleLeuLeuPheLeuIleMetArgSerGlnL : 345 | !||| !|||..!!!:! !!.!|||:!!:!!.!!|||!!:!!:|||||||||! rLeuLeuAspProGlnAspArgHisIleIleIleLeuLeuMetIleArgSerGlnA 1395364 : CCTTCTGGATCCTCAAGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAA : 1395420 346 : ysGlnLeuThrIleThrValGlyArgPheThrAsnLeuSerLeuGlnGlnPheAla : 363 :!!:!||||||||||||!.!|||!:!|||! !:!!|||||||||:!! |||||| rgArgLeuThrIleThrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAla 1395421 : GACGATTAACAATCACCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCA : 1395474 364 : Asn >>>> Target Intron 3 >>>> IleIleLysLeuSerAlaSerTyr : 372 ||| 387 bp |||:!!||| !|||||||||||| Asn++ ++IleLeuLysAlaSerAlaSerTyr 1395475 : AATgt.........................agatcTTAAAGGCTTCTGCATCGTAC : 1395888 373 : ValSerValLeuLeuAlaLeu : 379 :!!|||||||||! !|||:!! IleSerValLeuTyrAlaMet 1395889 : ATATCTGTACTGTATGCGATG : 1395911 vulgar: CbirOr145 198 379 . KQ414716.1 1394161 1395911 + 405 M 72 216 S 0 2 5 0 2 I 0 460 3 0 2 S 1 1 M 11 33 G 0 3 M 30 90 5 0 2 I 0 349 3 0 2 M 52 156 5 0 2 I 0 383 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394162 1395911 405 + . gene_id 1 ; sequence CbirOr145 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394162 1394379 . + . KQ414716.1 exonerate:protein2genome:local exon 1394162 1394379 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394380 1394381 . + . intron_id 1 ; splice_site "CT" KQ414716.1 exonerate:protein2genome:local intron 1394380 1394843 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394842 1394843 . + . intron_id 0 ; splice_site "at" KQ414716.1 exonerate:protein2genome:local cds 1394844 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394844 1394970 . + . insertions 3 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394971 1394972 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394971 1395323 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1395322 1395323 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1395324 1395479 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395479 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1395480 1395481 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1395480 1395866 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1395865 1395866 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1395867 1395911 . + . KQ414716.1 exonerate:protein2genome:local exon 1395867 1395911 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394162 1395911 405 + . alignment_id 1 ; Query CbirOr145 ; Align 1394162 199 216 ; Align 1394845 272 33 ; Align 1394881 283 90 ; Align 1395324 313 156 ; Align 1395867 365 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr145 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 391 Query range: 5 -> 274 Target range: 1385637 -> 1387338 6 : IleThrArgSerIleGluIleGlyLeuArgValAlaGlyIleTrpProAsnValSe : 24 |||!.!||| !!:!:||| !.!!||||||:!! !||| !||||||:!! !|| IleAsnArgProLeuGluTyrSerLeuArgLeuPheGlyAlaTrpProAspSerSe 1385638 : ATTAATCGTCCATTGGAATATAGCCTCCGTCTATTTGGCGCCTGGCCAGATTCTTC : 1385692 25 : rTyrThrIleAlaSerArgLeuLeuTrpThrMetThrMetIleAlaAlaGlnThrP : 43 ||||:!!.!! !!.!!!!:!!:!!|||:!!! !! !||| !... | rTyrSerPheLeuLysSerIleIleTrpSerThrIleMetAlaThrPheLeuMetP 1385693 : CTATTCATTTCTGAAAAGTATTATTTGGTCGACGATAATGGCAAcgtttttaatgt : 1385749 44 : heGlnTyrArgHisMetValLeuHisLeuHisSerGluAspLeuSerProLeuMet : 61 |||||||| !!:!! :!! !|||:!!...||| ||| |||::: heGlnTyrTrpTyrCysIleThrHisIleArgSer---GlyLeuIleAspLeuLeu 1385750 : ttcaataTTGGTATTGTATTACTCATATTAGATCA---ggtttaattgatttattg : 1385800 62 : AspGlyLeuSerAlaThrLeuSerTyrSerLeuLeuCysValLysLeuIleValPh : 80 |||||||||||| !||||||||| !!||||||:!!! !:!!|||||||||:!!.! AspGlyLeuSerIleThrLeuSerAsnSerLeuValPheLeuLysLeuIleIleIl 1385801 : GACGGATTGAGTATTACTTTATCAAATTCACTCGTCTTTCTCAAATTGATTATTAT : 1385857 81 : eTrpThrLysGln{Ar} >>>> Target Intron 1 >>>> {g}IlePheH : 88 !||| ! ! ...{||} 486 bp {|}! !|||: eTrpLeuHisSer{Ar}++ ++{g}ThrPheT 1385858 : TTGGCTTCATAGT{CG}gt.........................ag{A}ACATTTT : 1386367 89 : isAspValLeuArgValIleAlaThrAspTrpLysGluCysGluAspValGlyGlu : 106 !!! !:!!|||! !..!:!! ! !|||!! !!..!.! !! ..!... ||| yrGlyIleLeuThrThrValPheGluAspCysAsnAsnTyrAlaSerThrValGlu 1386368 : ATGGCATTCTGACAACCGTATTCGAGGACTGCAATAATTATGCTTCTAccgttgaa : 1386421 107 : AlaLeuCysThrMetThrSerValAlaAsnLeuCysHisArgPheSerAsnSerIl : 125 ||||||..! !|||! |||! ! !|||...|||||| :: AsnLysArgIleMetThrAspLysAlaMetLeuSerSerArgIleSerAsnPheLe 1386422 : aataaacgaataatgACAGATAAAGCTATGTTGTCTTCTCGtatctcaaatttttt : 1386478 126 : eIleGlyLeuHisSerMetAlaValLeuPheTyrCysIleGlyValValAlaLeuS : 144 :|||||| ! !|||!!:.!! !!||| ! |||! ! !!.!:!!!.!|||! uIleGlyTyrPheSerIleThrPheLeuValTyrSerGlyLeuAlaLeuValLeuP 1386479 : aattggctATTTTTCGATCACGTTCCTTGTATATTCAGGACTTGCTCTAGTATTAT : 1386535 145 : erAsnHisAspGly<-><-><-><->IleAlaGluArgGluLeuPheLeuLysMet : 158 !:!!.!.||| ! ! :::|||:::......::::::||| heAspGluAspGlnAsnGlyProValSerLysGlnArgLysPheLeuIleArgMet 1386536 : TTGATGAAGATCAGAATGGACCGGTTTCCAaacaaaggaaatttttaattagaatg : 1386589 159 : GluLeuProPheGluSerGlyThrSerProValTyrGluLeuValMetThrThrGl : 177 |||!!!|||||||||:!! !..!|||||| ||||||:::::::::......|| GluPheProPheGluAlaThrValSerProArgTyrGluIleIleLeuValValGl 1386590 : gAATTTCCTTTCGAAGCTACAGTCTCTCCACgttatgaaattattctagttgtaca : 1386646 178 : nPheLeuHisGlnMetThrSerAlaThrValIleGlyValLeuSerAlaLeuLeuV : 196 ||||::: ::: !! !!.! !! ! !!.!..!! !! !||||||:!!! nPheIlePheGluAlaPheIleValTyrGlyAlaAlaThrSerIleAlaLeuIleA 1386647 : atttatattcgaagcATTTATAGTTTATGGAGCAGCTACATCGATAGCCCTAATTG : 1386703 197 : alThrLeu >>>> Target Intron 2 >>>> ValLeuHisAlaGlyGlyG : 205 .!..!||| 399 bp :!!||||||!.!||||||| laValLeu++ ++IleLeuHisValGlyGlyG 1386704 : CAGTACTAgt.........................agATATTACATGTTGGTGGTC : 1387129 206 : lnIleAspIleLeuArgGluArgLeuLeuGluIleLeuSerLysAspLysLysPro : 223 ||||||||:!!||| !!:!!!.!:!! !!!:|||! ! !!!!. !!:!!||| ! lnIleAspLeuLeuCysGlnAsnMetArgAspIleSerArgAsnHisGluLysLys 1387130 : AGATCGATTTATTGTGTCAAAACATGAGAGACATTTCTCGTAATCATGAGAAGAAA : 1387183 224 : ThrMetSerThrIleThrIleGlySerLeuIleGlnArgHisGlnAsnIleIleIl : 242 ..! !..!! !:!:|||||| !..!:!!:!! |||||||||...|||||| ValProGlnLysLeuThrIleLysAspValValValArgHisGlnArgIleIleAr 1387184 : GTACCGCAAAAACTGACAATAAAGGATGTCGTTGTTAGGCATCAACGAATTATACG : 1387240 243 : ePheThrGluLysIleGluSerLeuTyrSerTyrIleAlaLeuAlaGlnPheIleS : 261 !.!.:!!:!!!!.||||||!!!:!!!:!!!!||||||:!!|||...||||||:::| gLeuSerLysAsnIleGluThrValPheThrTyrIleSerLeuCysGlnPheLeuS 1387241 : ACTGTCTAAAAATATCGAGACAGTTTTTACTTATATATCATTATgccaatttttat : 1387297 262 : erAsnThrValValIleCysCysLeuGlyPheIleIleVal : 274 ||||| :!!|||||||||! !:!!.!!|||:!!:!:||| erAsnMetLeuValIleCysPheIleSerPheValLeuVal 1387298 : cgaatatgcTGGTTATCTGTTTCATAAGCTTCGTTTTGGTA : 1387338 vulgar: CbirOr145 5 274 . KQ414716.1 1385637 1387338 + 391 M 49 147 G 1 0 M 29 87 S 0 2 5 0 2 I 0 482 3 0 2 S 1 1 M 63 189 G 0 12 M 50 150 5 0 2 I 0 395 3 0 2 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1385638 1387338 391 + . gene_id 2 ; sequence CbirOr145 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1385638 1385873 . + . KQ414716.1 exonerate:protein2genome:local exon 1385638 1385873 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local splice5 1385874 1385875 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1385874 1386359 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1386358 1386359 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1386360 1386711 . + . KQ414716.1 exonerate:protein2genome:local exon 1386360 1386711 . + . insertions 12 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1386712 1386713 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1386712 1387110 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1387109 1387110 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387111 1387338 . + . KQ414716.1 exonerate:protein2genome:local exon 1387111 1387338 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1385638 1387338 391 + . alignment_id 2 ; Query CbirOr145 ; Align 1385638 6 147 ; Align 1385785 56 87 ; Align 1386361 86 189 ; Align 1386562 149 150 ; Align 1387111 199 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr145 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 351 Query range: 3 -> 199 Target range: 1390535 -> 1392022 4 : AsnThrIleThrArgSerIleGluIleGlyLeuArgValAlaGlyIleTrpProAs : 22 !!.!:!|||!:!||| !!:!:|||||||||||||||:!!.!!||||||||||||.. LysSerIleSerArgProValGluIleGlyLeuArgLeuThrGlyIleTrpProGl 1390536 : AAAAGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGGAATTTGGCCAGG : 1390590 23 : nValSerTyrThrIleAlaSerArgLeuLeuTrpThrMetThrMetIleAlaAlaG : 41 ! !|||||| !||| ! !|||:!! !|||! !!!: !|||! !!.!!.!| ySerSerTyrGluIleIleValArgValThrTrpIleIleLeuMetThrValValG 1390591 : TTCATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTATGACAGTTGTAC : 1390647 42 : lnThrPheGlnTyrArgHisMetValLeuHisLeuHisSerGluAspLeuSerPro : 59 ||! !||||||||||||:!!!!::!! !|||||| !!.!!...:!!|||:!! ! lnIlePheGlnTyrArgTyrIleIleLysHisLeuAspGlySerAsnLeuAlaAsn 1390648 : AAATATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGTAATCTGGCGAAC : 1390701 60 : LeuMetAspGlyLeuSerAlaThrLeuSerTyrSerLeuLeuCysValLysLeuIl : 78 |||!!:|||.!!:!!.!!.!!|||||| !!||||||||||||! !||||||||||| LeuIleAspSerValGlyThrThrLeuProTyrSerLeuLeuTyrValLysLeuIl 1390702 : TTAATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTATgtcaaattaat : 1390758 79 : eValPheTrpThrLysGln{Ar} >>>> Target Intron 1 >>>> {g}I : 86 |:::||||||||||||!::{ !} 884 bp {!}| eIlePheTrpThrLysArg{Gl}++ ++{y}I 1390759 : tattttctggaCTAAACGT{GG}gt.........................ag{a}a : 1391666 87 : lePheHisAspValLeuArgValIleAlaThrAspTrpLysGluCysGluAspVal : 104 |||||...::::::||| !! !!!::!!!.!||||||!...!.! !..!.....! lePheGluAsnMetLeuValGlyMetSerAsnAspTrpSerAsnSerSerSerThr 1391667 : tattcgaaaatatgtTAGTGGGAATGTCTAACGATTGGAGTAATTCTTCATCAACG : 1391720 105 : GlyGluAlaLeuCysThrMetThrSerValAlaAsnLeuCysHisArgPheSerAs : 123 ! ! !:!! !.!!|||! !||| !|||.!.|||...:!!|||!:!|||!! LysPheAspIleAsnAlaMetIleSerLysAlaGluLeuAlaTyrArgTyrSerLy 1391721 : AAATTTGACATAAACGCCATGATAAGTAAAGCTGAACTTGCGTATCGTTATTCGAA : 1391777 124 : nSerIleIleGlyLeuHisSerMetAlaValLeuPheTyrCysIleGlyValValA : 142 . !|||!!:.!! !:!!:!!!!:||||||!!! !||| !! !! ! !! !!! sValIleMetSerThrTyrAlaIleAlaValPheAlaTyrThrSerValPhePheG 1391778 : GGTAATTATGAGCACATATGCTATTGCCGTTTTCGCTTATACCAGCGTGTTTTTCG : 1391834 143 : laLeuSerAsnHisAspGlyIleAlaGlu<-><-><-><-><->ArgGluLeuPhe : 155 !!!!! !..!||||||..! !!.!||| |||||||||!!. luPheMetArgHisAspAsnAspGlyGluTyrAspLeuLysSerArgGluLeuLeu 1391835 : AGTTTATGCGTCACGACAACGACGGCGAATATGATTTAAAGTCTCGAGAACTTTTG : 1391888 156 : LeuLysMetGluLeuProPheGluSerGlyThrSerProValTyrGluLeuValMe : 174 :!!||||||!!:|||||||||! !! ! !! !!!!|||..!|||:!!! !|||.! MetLysMetAspLeuProPheAlaTyrTyrLysThrProThrTyrGlnTrpValPh 1391889 : ATGAAAATGGACCTCCCGTTTGCGTATTACAAAACACCGACGTATCAATGGGTATT : 1391945 175 : tThrThrGlnPheLeuHisGlnMetThrSerAlaThrValIleGlyValLeuSerA : 193 ...!..!|||||||||!!.! !:!!! !!:!|||:!!!.!||||||:!!|||..!| eValValGlnPheLeuGlnLeuLeuIleAsnAlaSerAlaIleGlyMetLeuAspA 1391946 : TGTTGTACAATTTCTTCAGCTGTTGATAAATGCATCTGCTATTGGTATGTTAGATG : 1392002 194 : laLeuLeuValThrLeuVal : 199 |||||:!!:!!||||||||| laLeuIleIleThrLeuVal 1392003 : CTTTGATAATTACGTTGGTA : 1392022 vulgar: CbirOr145 3 199 . KQ414716.1 1390535 1392022 + 351 M 81 243 S 0 2 5 0 2 I 0 880 3 0 2 S 1 1 M 66 198 G 0 15 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390536 1392022 351 + . gene_id 3 ; sequence CbirOr145 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1390536 1390780 . + . KQ414716.1 exonerate:protein2genome:local exon 1390536 1390780 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1390781 1390782 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1390781 1391664 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1391663 1391664 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1391665 1392022 . + . KQ414716.1 exonerate:protein2genome:local exon 1391665 1392022 . + . insertions 15 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390536 1392022 351 + . alignment_id 3 ; Query CbirOr145 ; Align 1390536 4 243 ; Align 1391666 86 198 ; Align 1391879 152 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr145 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 328 Query range: 229 -> 365 Target range: 1401096 -> 1402594 230 : IleGlySerLeuIleGlnArgHisGlnAsnIleIleIlePheThrGluLysIleGl : 248 ||| ...|||.!.|||||||||.!.||||||:!!|||.!!|||!:!||||| IleLysPhePheIleAsnArgHisGlnGluIleIleValPheAlaGluArgIleGl 1401097 : ataaaattcttcattaACAGACATCAGGAAATTATTGTTTTTGCAGAAAGAATTGA : 1401151 249 : uSerLeuTyrSerTyrIleAlaLeuAlaGlnPheIleSerAsnThrValValIleC : 267 |!.!|||!:!!!!|||!!:||||||::!|||.!!:!:|||||||||:!!:!!|||| uLysLeuPheThrTyrMetAlaLeuSerGlnLeuValSerAsnThrIleIleIleC 1401152 : GAAACTTTTTACATACATGGCTCTCAGTCAACTTGTGTCCAATACGATAATTATAT : 1401208 268 : ysCysLeuGlyPheIleIleValAsn >>>> Target Intron 1 >>>> S : 276 |||||:!!||||||:!!:!!|||! ! 83 bp : ysCysValGlyPheLeuValValIle++ ++A 1401209 : GTTGCGTAGGATTTCTCGTTGTAATTgt.........................agg : 1401318 277 : erIleGlyThrGlu<->GlySerSerMetIleIleArgSerLeuLeuPheTyrVal : 293 !!:!! !! !!!: ||| ! !!:!!:!!:!!!::|||||||||||||||||| laValHisIleAspAsnGlyValProLeuLeuLeuLysSerLeuLeuPheTyrVal 1401319 : CAGTACATATCGACAATGGAGTTCCTCTGTTACTCAaatctcttttattttatgtg : 1401372 294 : ValIleAsnLeuGluAlaPheIlePheCysPheAlaGlyGluTyrLeuSerMet{L : 312 |||||| !|||||||||||||||!:!||||||!.!|||||||||||||||!!:{| ValIleCysLeuGluAlaPheIleTyrCysPheValGlyGluTyrLeuSerIle{L 1401373 : GTTATTTGTTTAGAAGCGTTTATATACTGCTTTGTCGGAGAATATCTCAGTATC{A : 1401429 313 : y} >>>> Target Intron 2 >>>> {s}SerLysMetIleGlyAspAlaA : 320 |} 1004 bp {|}|||:!!:!:||||||:!!.!!| y}+- --{s}SerGlnLeuIleGlyAsnThrA 1401430 : A}gg.........................ta{G}AGCCAACTAATCGGCAATACGG : 1402457 321 : laTyrGluSerLeuTrpTyrAspLeuThrProSerGluThrArgIleLeuLeuPhe : 338 ||||||||! !||||||||||||||| ! !!!!!|||!:!!:!:!!|||:!! ! laTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSerGlnLeuLeuIlePro 1402458 : CGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAGCCAACTTCTAATACCT : 1402511 339 : LeuIleMetArgSerGlnLysGlnLeuThrIleThrValGlyArgPheThrAsnLe : 357 :!!|||:!!|||||||||||| !!!|||...||| |||:::|||::::::|| ValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysPheSerSerLe 1402512 : GTAATATTGAGGTCTCAAAAGGGTTTCACGTttacttttggaaaattttcaagtct : 1402568 358 : uSerLeuGlnGlnPheAlaAsnIle : 365 |||||||:!!...|||.!! !:!! uSerLeuGluSerPheThrAlaVal 1402569 : CTCCTTGGAAAGCTTTACGGCCGTA : 1402594 vulgar: CbirOr145 229 365 . KQ414716.1 1401096 1402594 + 328 M 46 138 5 0 2 I 0 79 3 0 2 M 5 15 G 0 3 M 31 93 S 0 2 5 0 2 I 0 1000 3 0 2 S 1 1 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401097 1402594 328 + . gene_id 4 ; sequence CbirOr145 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401097 1401234 . + . KQ414716.1 exonerate:protein2genome:local exon 1401097 1401234 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401235 1401236 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401235 1401317 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1401316 1401317 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1401318 1401430 . + . KQ414716.1 exonerate:protein2genome:local exon 1401318 1401430 . + . insertions 3 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401431 1401432 . + . intron_id 2 ; splice_site "GG" KQ414716.1 exonerate:protein2genome:local intron 1401431 1402434 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1402433 1402434 . + . intron_id 1 ; splice_site "TA" KQ414716.1 exonerate:protein2genome:local cds 1402435 1402594 . + . KQ414716.1 exonerate:protein2genome:local exon 1402435 1402594 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401097 1402594 328 + . alignment_id 4 ; Query CbirOr145 ; Align 1401097 230 138 ; Align 1401318 276 15 ; Align 1401336 281 93 ; Align 1402436 313 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr145 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 303 Query range: 3 -> 199 Target range: 1405086 -> 1406100 4 : AsnThrIleThrArgSerIleGluIleGlyLeuArgValAlaGlyIleTrpProAs : 22 |||||||||!:!!:!!!!:!!:!! !||||||||| !|||!.! !||||||.. AsnThrIleSerGlnThrValLysHisGlyLeuArgTyrAlaAlaSerTrpProGl 1405087 : AATACGATAAGTCAAACTGTAAAACATGGCCTCCGTTATGCTGCCTCTTGGCCAGG : 1405141 23 : nValSerTyrThrIleAlaSerArgLeuLeuTrpThrMetThrMetIleAlaAlaG : 41 ...! !!! ||| :::......||||||!!:..!||| !!.! !| yThrProSerLeuIleLeuHisLysPhePheTrpThrIleValMetCysGlyLeuG 1405142 : AACACCATCGTtgattttacataaatttttttggaCAATTGTCATGTGTGGACTTC : 1405198 42 : lnThrPheGlnTyrArgHisMetValLeuHisLeuHisSerGluAspLeuSerPro : 59 ||! !!:!|||||| !!:!!:!!:!! !|||! ! ! ! !.!. !||| ! ! lnIleTyrGlnTyrGlyTyrValIleArgHisTyrLysTyrAsnThrLeuValAsp 1405199 : AAATTTATCAGTACGGCTACGTGATCAGGCATTATAAATATAACACTCTTGTGGAT : 1405252 60 : LeuMetAspGlyLeuSerAlaThrLeuSerTyrSerLeuLeuCysValLysLeuIl : 78 !:!:|||..!|||||| ! !:!! !!!:!!!!|||:!!|||:!!||||||.! ThrValAspAsnLeuSerIleCysMetProPheThrLeuValCysIleLysLeuPh 1405253 : ACAGTAGATAATTTGAGCATTTGCATGCCATTCACTTTAGTGTGCATCAAATTATT : 1405309 79 : eValPheTrpThrLysGln{Ar} >>>> Target Intron 1 >>>> {g}I : 86 !||| !|||||| ! !::{ !} 429 bp {!}: eValAlaTrpThrHisArg{Gl}++ ++{y}L 1405310 : TGTTGCTTGGACACATCGC{GG}gt.........................ag{t}C : 1405762 87 : lePheHisAspValLeuArgValIleAlaThrAspTrpLysGluCysGluAspVal : 104 !!.!!:!!|||:!!:!! !..!!!:! ! !|||!! |||:!!! !! ||| euLeuTyrAspIleIleSerThrMetGluGluAspCysLysLysTyrAla---Val 1405763 : TACTTTACGACATTATCTCGACCATGGAAGAAGACTGTAAAAAGTACGCT---GTT : 1405813 105 : GlyGluAlaLeuCysThrMetThrSerValAlaAsnLeuCysHisArgPheSerAs : 123 :::... ::::::.....!|||:!!|||! ! !|||!!.!!!|| LeuAspThrLysAsnLeuIleSerLysThrAlaHisLeuSerPheArgLeuThrAs 1405814 : CttgatacaaaaaatttaatatcaaaaaCAGCACATCTATCTTTTCGATTAACCAA : 1405870 124 : nSerIleIleGlyLeuHisSerMetAlaValLeuPheTyrCysIleGlyValValA : 142 |! !:!:||| !!:!! ! ! :!!..! !! !|||...|||||||||:!!| nIleValIleCysIleCysValSerSerThrAlaCysTyrAlaIleGlyValLeuA 1405871 : TATAGTGATATGTATCTGTGTATCATCCACGGCATGTTATGCAATTGGAGTTTTGG : 1405927 143 : laLeuSerAsnHisAspGlyIleAlaGluArgGluLeuPheLeuLysMetGluLeu : 160 ||! !..!!.. !:!! !! !||| |||||||||!!.:!!||||||!!:||| laProGlnArgThrAsnIleThrAlaProArgGluLeuLeuIleLysMetAspLeu 1405928 : CGCCACAAAGGACTAATATAACAGCACCTCGAGAACTTTTGATAAAAATGGACTTG : 1405981 161 : ProPheGluSerGlyThrSerProValTyrGluLeuValMetThrThrGlnPheLe : 179 ||||||.!.!!!..!!.!||||||:!!||||||||||||!!:..! !|||!:!|| ProPheAsnThrAsnAsnSerProIleTyrGluLeuValIleValLeuGlnTyrLe 1405982 : CCATTTAATACGAACAATTCGCCTATTTACGAGCTGGTAATAGTTTTACAATACCT : 1406038 180 : uHisGlnMetThrSerAlaThrValIleGlyValLeuSerAlaLeuLeuValThrL : 198 | !:!!:!::!!!!!||| !..!.!!||||||!!!|||::!||||||:!!! !: uCysLysValSerThrAlaPheThrPheGlyValPheSerSerLeuLeuLeuMetM 1406039 : ATGCAAAGTATCGACAGCTTTTACGTTTGGTGTATTCAGCAGTCTGCTTTTGATGA : 1406095 199 : euVal : 199 !!||| etVal 1406096 : TGGTA : 1406100 vulgar: CbirOr145 3 199 . KQ414716.1 1405086 1406100 + 303 M 81 243 S 0 2 5 0 2 I 0 425 3 0 2 S 1 1 M 17 51 G 1 0 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1405087 1406100 303 + . gene_id 5 ; sequence CbirOr145 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1405087 1405331 . + . KQ414716.1 exonerate:protein2genome:local exon 1405087 1405331 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1405332 1405333 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1405332 1405760 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1405759 1405760 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1405761 1406100 . + . KQ414716.1 exonerate:protein2genome:local exon 1405761 1406100 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local similarity 1405087 1406100 303 + . alignment_id 5 ; Query CbirOr145 ; Align 1405087 4 243 ; Align 1405762 86 51 ; Align 1405813 104 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr145 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 266 Query range: 277 -> 379 Target range: 1408530 -> 1409528 278 : GlyThrGluGlySerSerMetIleIleArgSerLeuLeuPheTyrValValIleAs : 296 ..!!.!.!.|||! !!.!|||:!:|||!:!! !:!!:!!!:!|||:!!!.!:!: AsnAsnAsnGlyPheLysMetLeuIleLysPheValValTyrTyrMetAlaValCy 1408531 : AATAATAATGGATTTAAAATGTTGATCAAATTTGTTGTATATTACATGGCTGTGTG : 1408585 297 : nLeuGluAlaPheIlePheCysPheAlaGlyGluTyrLeuSerMetLys >>>> : 313 !! !||||||||||||!:!|||||||||||||||||||||!:!!!:||| sSerGluAlaPheIleTyrCysPheAlaGlyGluTyrLeuAsnIleLys++ 1408586 : CTCAGAAGCGTTCATATACTGCTTTGCTGGAGAGTACCTTAATATCAAGgt..... : 1408638 314 : Target Intron 1 >>>> SerLysMetIleGlyAspAlaAlaTyrGluSerL : 324 414 bp ||||||:::|||||||||.!!|||||||||! !| ++SerLysLeuIleGlyAspThrAlaTyrGluPheL 1408639 : ....................agagtaaactgattggagACACGGCGTATGAATTTC : 1409083 325 : euTrpTyrAspLeuThrProSerGluThrArgIleLeuLeuPheLeuIleMetArg : 342 ||||||||:!!:!! ! !!!.!|||!:!|||:!!:!!|||.!!:!!|||:!:||| euTrpTyrAsnMetHisSerLysGluSerArgLeuMetLeuLeuValIleLeuArg 1409084 : TTTGGTATAATATGCATTCGAAGGAAAGCCGACTTATGTTGCTTGTAATACTACGA : 1409137 343 : SerGlnLysGlnLeuThrIleThrValGlyArgPheThrAsnLeuSerLeuGlnGl : 361 ||||||||| !!!!|||...||| |||:::|||...:::||||||:!!:!!.. SerGlnLysGlyPheThrPheThrPheGlyLysPheAlaSerLeuSerMetGluSe 1409138 : TCACAGAAAGGATTTACtttcacttttggaaaatttgcaagtCTTTCCATGGAAAG : 1409194 362 : nPheAlaAsn >>>> Target Intron 2 >>>> IleIleLysLeuSerAl : 370 .||||||..! 278 bp |||!!:||| !||||| rPheAlaGly++ ++IleMetLysAlaSerAl 1409195 : TTTTGCAGGCgt.........................agattATGAAAGCTTCTGC : 1409499 371 : aSerTyrValSerValLeuLeuAlaLeu : 379 |||||||:!!|||||||||||||||:!! aSerTyrIleSerValLeuLeuAlaMet 1409500 : ATCGTATATATCCGTATTGCTCGCAATG : 1409528 vulgar: CbirOr145 277 379 . KQ414716.1 1408530 1409528 + 266 M 35 105 5 0 2 I 0 410 3 0 2 M 52 156 5 0 2 I 0 274 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408531 1409528 266 + . gene_id 6 ; sequence CbirOr145 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408531 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408531 1408635 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408636 1408637 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408636 1409049 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1409048 1409049 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409050 1409205 . + . KQ414716.1 exonerate:protein2genome:local exon 1409050 1409205 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1409206 1409207 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1409206 1409483 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1409482 1409483 . + . intron_id 1 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409484 1409528 . + . KQ414716.1 exonerate:protein2genome:local exon 1409484 1409528 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408531 1409528 266 + . alignment_id 6 ; Query CbirOr145 ; Align 1408531 278 105 ; Align 1409050 313 156 ; Align 1409484 365 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr145 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 182 Query range: 312 -> 379 Target range: 1387619 -> 1387955 313 : SerLysMetIleGlyAspAlaAlaTyrGluSerLeuTrpTyrAspLeuThrProSe : 331 |||:!! ||| !.!.:!:...|||... |||||||||||||||! !||| ! SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 332 : rGluThrArgIleLeuLeuPheLeuIleMetArgSerGlnLysGlnLeuThrIleT : 350 !|||.!!||||||:::|||...:::|||:::||||||||||||:!!|||! !:!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 351 : hrValGlyArgPheThrAsnLeuSerLeuGlnGlnPheAlaAsn >>>> Targe : 365 ||!.!|||!:!|||..!|||||||||||| !||||||||| hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt.......... : 1387778 366 : t Intron 1 >>>> IleIleLysLeuSerAlaSerTyrValSerValLeuLeu : 377 135 bp ::::!!||| !||||||||||||||||||||||||! ! ++MetLeuLysAlaSerAlaSerTyrValSerValLeuHis 1387779 : ...............agatgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTTGCAT : 1387947 378 : AlaLeu : 379 |||:!! AlaMet 1387948 : GCAATG : 1387955 vulgar: CbirOr145 312 379 . KQ414716.1 1387619 1387955 + 182 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387955 182 + . gene_id 7 ; sequence CbirOr145 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387955 182 + . alignment_id 7 ; Query CbirOr145 ; Align 1387620 313 156 ; Align 1387911 365 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr145 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 110 -> 199 Target range: 1398691 -> 1398958 111 : MetThrSerValAlaAsnLeuCysHisArgPheSerAsnSerIleIleGlyLeuHi : 129 |||:!!!.!..!!.!.!.||| ...::::::! !:!!!!:..!|||:! MetSerLysThrGlyGlnLeuSerPheTyrLeuThrSerIleValMetSerLeuTy 1398692 : ATGTCAAAAACCGGACAgctatctttttatttaacaagcATTGTTATGTCTTTGTA : 1398746 130 : sSerMetAlaValLeuPheTyrCysIleGlyValValAlaLeuSerAsnHisAspG : 148 !! ! :!!!.! !|||||| ! !..!..!:!!!.!!!!..!...:!!:!!! rMetAlaSerAlaAlaPheTyrIleThrAsnThrIleGlyPheGlnGlyAsnAsnA 1398747 : TATGGCATCTGCAGCATTTTACATAACTAATACTATTGGATTTCAAGGAAATAATG : 1398803 149 : lyIleAlaGluArgGluLeuPheLeuLysMetGluLeuProPheGluSerGlyThr : 166 .! !!.!...|||||||||.!!:!!||||||!!:||||||||||||!!!.!! ! laSerValSerArgGluLeuLeuMetLysMetAspLeuProPheGluThrSerGlu 1398804 : CTTCAGTATCTCGGGAGCTCCTTATGAAAATGGATTTGCCTTTCGAGACCAGCGAA : 1398857 167 : SerProValTyrGluLeuValMetThrThrGlnPheLeuHisGlnMetThrSerAl : 185 |||||| !||||||||||||:!:||||||||| !!||| !!!.:!::!! !|| SerProAsnTyrGluLeuValValThrThrGlnValLeuIleHisLeuSerValAl 1398858 : TCGCCGAATTACGAACTTGTAGTAACTACACAGGTCCTTATTCACTTATCAGTGGC : 1398914 186 : aThrValIleGlyValLeuSerAlaLeuLeuValThrLeuVal : 199 |..!!.! !|||!.!!!!!:!|||||||||:!!! !:!!||| aValAlaTyrGlyAlaPheAsnAlaLeuLeuLeuMetValVal 1398915 : CGTAGCATACGGTGCATTCAATGCTCTTCTCTTAATGGTGGTA : 1398958 vulgar: CbirOr145 110 199 . KQ414716.1 1398691 1398958 + 150 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1398692 1398958 150 + . gene_id 8 ; sequence CbirOr145 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1398692 1398958 . + . KQ414716.1 exonerate:protein2genome:local exon 1398692 1398958 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1398692 1398958 150 + . alignment_id 8 ; Query CbirOr145 ; Align 1398692 111 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr139 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 217 Query range: 201 -> 317 Target range: 1387110 -> 1387540 202 : IleLeuHisLeuAlaGlyGlnIleAspIleLeuArgArgTrpLeuThrGluIleLe : 220 |||||||||:!!!.!||||||||||||:!!||| !!!:! :!!! !!!:|||! IleLeuHisValGlyGlyGlnIleAspLeuLeuCysGlnAsnMetArgAspIleSe 1387111 : ATATTACATGTTGGTGGTCAGATCGATTTATTGTGTCAAAACATGAGAGACATTTC : 1387165 221 : uPheSerGluGluAsnGlyTyrLysProSerAlaValMetIleLysLysIleIleG : 239 ! !!:!.!.|||!!. ! |||..! !:!!! |||||| ! :!!:!!! rArgAsnHisGluLysLysVal---ProGlnLysLeuThrIleLysAspValValV 1387166 : TCGTAATCATGAGAAGAAAGTA---CCGCAAAAACTGACAATAAAGGATGTCGTTG : 1387219 240 : luLysHisGlnAsnIleIleAsnPheSerGluAspIleGluAsnLeuTyrSerArg : 257 !:!||||||...||||||....!.|||:!!:!!||||||!..:!!!:!!!! ! alArgHisGlnArgIleIleArgLeuSerLysAsnIleGluThrValPheThrTyr 1387220 : TTAGGCATCAACGAATTATACGACTGTCTAAAAATATCGAGACAGTTTTTACTTAT : 1387273 258 : IleAlaLeuIleLeuPheValSerAspThrLeuIleIleCysPheValGlyPheVa : 276 |||:!!||| |||:::|||::: |||:!!|||||||||:!!.!!||||| IleSerLeuCysGlnPheLeuSerAsnMetLeuValIleCysPheIleSerPheVa 1387274 : ATATCATTATgccaatttttatcgaatatgcTGGTTATCTGTTTCATAAGCTTCGT : 1387330 277 : lLeuValThr >>>> Target Intron 1 >>>> SerIleGlyAlaSerAs : 285 |||||||||| 85 bp |||:!:..!.!!..!.! lLeuValThr++ ++SerLeuAsnThrGluGl 1387331 : TTTGGTAACCgt.........................agTCCTTGAACACGGAACA : 1387442 286 : nSerPhePheThrIleLeuLysIleLeuAlaPheTyrPheValMetAsnPheGluA : 304 .!!! ! !||||||||| !!!! !!!:!||| !!!.!:!:|||! !|||| nThrThrGlyLeuIleLeuLysCysPheProTyrTyrValAlaValAsnCysGluA 1387443 : GACAACTGGATTAATACTGAAATGTTTTCCCTATTACGTTGCTGTTAATTGTGAAG : 1387499 305 : laPheValTyrCysPheAlaGlyGluTyrLeuSerSerLys : 317 |||||:!!! |||!:!.!!||||||||||||!!!|||||| laPheIleLeuCysTyrThrGlyGluTyrLeuThrSerLys 1387500 : CATTCATTTTATGTTATACCGGAGAATATCTAACCTCTAAG : 1387540 vulgar: CbirOr139 201 317 . KQ414716.1 1387110 1387540 + 217 M 26 78 G 1 0 M 51 153 5 0 2 I 0 81 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387111 1387540 217 + . gene_id 1 ; sequence CbirOr139 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387111 1387341 . + . KQ414716.1 exonerate:protein2genome:local exon 1387111 1387341 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local splice5 1387342 1387343 . + . intron_id 1 ; splice_site "Gt" KQ414716.1 exonerate:protein2genome:local intron 1387342 1387426 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387425 1387426 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387427 1387540 . + . KQ414716.1 exonerate:protein2genome:local exon 1387427 1387540 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387111 1387540 217 + . alignment_id 1 ; Query CbirOr139 ; Align 1387111 202 78 ; Align 1387189 229 153 ; Align 1387427 280 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr139 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 209 Query range: 317 -> 385 Target range: 1395323 -> 1395914 318 : SerLysMetIleGlyGluAlaAlaTyrAspSerSerTrpTyrGlnSerThrProGl : 336 ||| ! |||.!!.!.|||||||||..!||| !!||||||! ! !||||| SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 337 : nAspSerArgIleIleLeuPheLeuIleMetArgSerGlnAsnGlnLeuThrIleT : 355 ||||!!!!.!||||||:!!.!!|||!!:!!:|||||||||!..!:!|||||||||| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 356 : hrIleGlyLysPheMetAspLeuSerLeuGluArgPheAlaAsn >>>> Targe : 370 || !||||||||||||||||||||||||||| !!||||||||| hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsn++ 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATgt.......... : 1395482 371 : t Intron 1 >>>> IleIleLysAlaSerAlaSerTyrValSerValLeuLeu : 382 387 bp |||:!!||||||||||||||||||:!!|||||||||! ! ++IleLeuLysAlaSerAlaSerTyrIleSerValLeuTyr 1395483 : ...............agatcTTAAAGGCTTCTGCATCGTACATATCTGTACTGTAT : 1395903 383 : AlaMetTyr : 385 ||||||||| AlaMetTyr 1395904 : GCGATGTAC : 1395914 vulgar: CbirOr139 317 385 . KQ414716.1 1395323 1395914 + 209 M 52 156 5 0 2 I 0 383 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395914 209 + . gene_id 2 ; sequence CbirOr139 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1395324 1395479 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395479 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1395480 1395481 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1395480 1395866 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1395865 1395866 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1395867 1395914 . + . KQ414716.1 exonerate:protein2genome:local exon 1395867 1395914 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395914 209 + . alignment_id 2 ; Query CbirOr139 ; Align 1395324 318 156 ; Align 1395867 370 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr139 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 0 -> 82 Target range: 1390523 -> 1390769 1 : MetLysValThrSerThrIleGlyArgSerValGluIleProLeuArgMetPheGl : 19 |||..! !!.!!.!!:!|||.!!||| !!||||||||| !||||||:!: !|| MetSerHisAsnLysSerIleSerArgProValGluIleGlyLeuArgLeuThrGl 1390524 : ATGTCGCATAACAAAAGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGG : 1390578 20 : yIleTrpProGlySerProTyrValSerLeuCysArgLeuPheTrpThrIleAlaL : 38 |||||||||||||||| !!|||! !! !:!! !|||:!! !|||! !||| !: yIleTrpProGlySerSerTyrGluIleIleValArgValThrTrpIleIleLeuM 1390579 : AATTTGGCCAGGTTCATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTA : 1390635 39 : euValThrAlaGlnTyrPheGlnTyrGlnTyrIleIleThrHisIleTyrIleAla : 56 !!..!..!!.!||| |||||||||!:!|||||||||! !|||:!! !! !::! etThrValValGlnIlePheGlnTyrArgTyrIleIleLysHisLeuAspGlySer 1390636 : TGACAGTTGTACAAATATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGT : 1390689 57 : AspLeuSerAspLeuMetAspGlyLeuSerAlaThrLeuAlaPheThrLeuLeuPh : 75 :!!|||:!!:!!|||!!:|||.!!:!!.!!.!!|||||| !!!:!!:!||||||!: AsnLeuAlaAsnLeuIleAspSerValGlyThrThrLeuProTyrSerLeuLeuTy 1390690 : AATCTGGCGAACTTAATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTA : 1390746 76 : eIleLysLeuValThrPheTrp : 82 !:::||||||::: |||||| rValLysLeuIleIlePheTrp 1390747 : Tgtcaaattaattattttctgg : 1390769 vulgar: CbirOr139 0 82 . KQ414716.1 1390523 1390769 + 205 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390524 1390769 205 + . gene_id 3 ; sequence CbirOr139 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1390524 1390769 . + . KQ414716.1 exonerate:protein2genome:local exon 1390524 1390769 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390524 1390769 205 + . alignment_id 3 ; Query CbirOr139 ; Align 1390524 1 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr139 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 185 Query range: 0 -> 86 Target range: 1385619 -> 1385874 1 : MetLysValThrSerThrIleGlyArgSerValGluIleProLeuArgMetPheGl : 19 |||! !|||!!!! !|||..!||| !!:!!||| ! !||||||:!:||||| MetThrSerThrThrIleIleAsnArgProLeuGluTyrSerLeuArgLeuPheGl 1385620 : ATGACTTCGACGACTATAATTAATCGTCCATTGGAATATAGCCTCCGTCTATTTGG : 1385674 20 : yIleTrpProGlySerProTyrValSerLeuCysArgLeuPheTrpThrIleAlaL : 38 | !||||||! !||| !!||| !! !||| !!!:!!.!!|||:!!! !: yAlaTrpProAspSerSerTyrSerPheLeuLysSerIleIleTrpSerThrIleM 1385675 : CGCCTGGCCAGATTCTTCCTATTCATTTCTGAAAAGTATTATTTGGTCGACGATAA : 1385731 39 : euValThrAlaGlnTyrPheGlnTyrGlnTyrIleIleThrHisIleTyrIleAla : 56 !!!.!||| ||||||||| !||| !|||||||||||| :!! etAlaThrPheLeuMetPheGlnTyrTrpTyrCysIleThrHisIleArg---Ser 1385732 : TGGCAAcgtttttaatgtttcaataTTGGTATTGTATTACTCATATTAGA---TCA : 1385782 57 : AspLeuSerAspLeuMetAspGlyLeuSerAlaThrLeuAlaPheThrLeuLeuPh : 75 ||| ||||||:::|||||||||||| !||||||:!! !:!!|||:!!|| GlyLeuIleAspLeuLeuAspGlyLeuSerIleThrLeuSerAsnSerLeuValPh 1385783 : ggtttaattgatttattgGACGGATTGAGTATTACTTTATCAAATTCACTCGTCTT : 1385839 76 : eIleLysLeuValThrPheTrpIleAsnGlnArg : 86 |:!!||||||:!!! !.!!|||:!!:!!...||| eLeuLysLeuIleIleIleTrpLeuHisSerArg 1385840 : TCTCAAATTGATTATTATTTGGCTTCATAGTCGG : 1385874 vulgar: CbirOr139 0 86 . KQ414716.1 1385619 1385874 + 185 M 54 162 G 1 0 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1385620 1385874 185 + . gene_id 4 ; sequence CbirOr139 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1385620 1385874 . + . KQ414716.1 exonerate:protein2genome:local exon 1385620 1385874 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local similarity 1385620 1385874 185 + . alignment_id 4 ; Query CbirOr139 ; Align 1385620 1 162 ; Align 1385782 56 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr149NTE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 308 -> 361 Target range: 1387619 -> 1387778 309 : SerSerGlyLeuGlnAspAlaPheTyrAsnIleLysTrpTyrLysAsnProProGl : 327 |||..! !!:!! !.!.:!: ||||||... |||||| ! !|||!: SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 328 : nHisThrArgLeuIleSerIleCysMetThrArgAlaGluLysProLeuThrLeuT : 346 !.!..!!|||:::::: ::: ::: |||:!!:!!||| !|||! !|||| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 347 : hrAlaGlyLysPheCysIleLeuSerLeuSerThrPheThrAsnIle : 361 |||||||||||||| ! !|||||||||:!!.!!|||.!!|||::: hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: CbirOr149NTE 308 361 . KQ414716.1 1387619 1387778 + 113 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387778 113 + . gene_id 1 ; sequence CbirOr149NTE ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387778 113 + . alignment_id 1 ; Query CbirOr149NTE ; Align 1387620 309 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr149NTE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 308 -> 361 Target range: 1395323 -> 1395482 309 : SerSerGlyLeuGlnAspAlaPheTyrAsnIleLysTrpTyrLysAsnProProGl : 327 ||| !..!:!!...:!!||| |||!:! ! |||||| !||||| SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 328 : nHisThrArgLeuIleSerIleCysMetThrArgAlaGluLysProLeuThrLeuT : 346 | !!! !!.!:!!|||! !:!! !|||! !|||:!!:!!!:!! !||||||:!!| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 347 : hrAlaGlyLysPheCysIleLeuSerLeuSerThrPheThrAsnIle : 361 |||||||||||||| !|||||||||..! !|||.!!|||:!! hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnVal 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTA : 1395482 vulgar: CbirOr149NTE 308 361 . KQ414716.1 1395323 1395482 + 109 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395482 109 + . gene_id 2 ; sequence CbirOr149NTE ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395482 109 + . alignment_id 2 ; Query CbirOr149NTE ; Align 1395324 309 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr148 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 317 -> 370 Target range: 1387619 -> 1387778 318 : SerAlaAlaLeuArgAspAlaPheTyrAsnThrGluTrpTyrAsnAsnProProSe : 336 ||| ! !:!!! !.!.:!: |||||| ||||||:!! !||| ! SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 337 : rCysThrLysLeuIleSerIleCysMetValArgAlaGluLysProMetValLeuT : 355 ! .!!::::::::: ::: ::::::|||:!!:!!||| !:!::!!|||| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 356 : hrAlaAlaLysPhePheProLeuSerLeuSerThrPheThrAsnIle : 370 |||||!.!|||||| ! !|||||||||:!!.!!|||.!!|||::: hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: CbirOr148 317 370 . KQ414716.1 1387619 1387778 + 102 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387778 102 + . gene_id 1 ; sequence CbirOr148 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387778 102 + . alignment_id 1 ; Query CbirOr148 ; Align 1387620 318 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr138 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 224 Query range: 200 -> 315 Target range: 1394161 -> 1394970 201 : ValLeuHisAlaSerGlyGlnIleLysIleLeuCysGlyTrpLeuIleLysIlePh : 219 :!!!!!||| !.!!|||||||||:!!!!:||| ! ||| ...||| IlePheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAsnIleSe 1394162 : ATATTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaatatttc : 1394216 220 : eProLysLysGluLysTyrAsnLeuGlnIleThrMetValGluLysIleIleThrA : 238 ||| ! ||||||:!!!..|||..!! !!.!! ..!:!!..!:!!||| !| rIleLysAspGluLysHisArgLeuSerArgAsnThrThrLysSerLeuIleHisA 1394217 : tattaaagATGAGAAACACAGATTATCGAGAAACACCACCAAATCATTAATTCACA : 1394273 239 : rgHisGlnAspIleIleAlaPheSerLysLysIleGluLysLeuTyrSerTyrIle : 256 |||||!!. |||||| ! !||| ! ...||||||!..|||!:!||||||||| rgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIle 1394274 : GACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACATT : 1394327 257 : AlaLeuValGlnPheLeuSerAspThrLeuLeuIleCysGlyLeuGlyPheIleLe : 275 ||||||:!!|||!::|||!!!:!!||||||:!!|||||| !!:!!||||||:!!:! AlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGlyPheLeuIl 1394328 : GCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGATTCTTAAT : 1394384 276 : uAlaThr >>>> Target Intron 1 >>>> SerIleGlyLysProAsnTh : 284 !!.!! ! 464 bp :!!.!!..!! ! ..... eValIle++ ++AlaPheAsnThrAspGlyAs 1394385 : AGTAATTgt.........................agGCATTTAATACAGatggaaa : 1394875 285 : rTrpValIleLeuIleLysThrCysLeuPheTyrPheSerMetAsnLeuGluAlaP : 303 . ...||||||||| |||||||||.!!:!!!!:!.!:!!||||||| nIleLysThrPheIleLysThrLeuLeuPheTyrIleAlaIleThrMetGluAlaP 1394876 : tataaaaacatttataaaaacattACTCTTTTACATCGCTATCACTATGGAAGCAT : 1394932 304 : heThrPheCysPheAlaGlyGluTyrLeuSerThrGlu : 315 ||! !|||! !|||||||||||||||||||||!.!:!! heIlePheSerPheAlaGlyGluTyrLeuSerAsnLys 1394933 : TCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAA : 1394970 vulgar: CbirOr138 200 315 . KQ414716.1 1394161 1394970 + 224 M 77 231 5 0 2 I 0 460 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394162 1394970 224 + . gene_id 1 ; sequence CbirOr138 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394162 1394392 . + . KQ414716.1 exonerate:protein2genome:local exon 1394162 1394392 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394393 1394394 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394393 1394856 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394855 1394856 . + . intron_id 0 ; splice_site "aG" KQ414716.1 exonerate:protein2genome:local cds 1394857 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394857 1394970 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394162 1394970 224 + . alignment_id 1 ; Query CbirOr138 ; Align 1394162 201 231 ; Align 1394857 278 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr138 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 206 Query range: 282 -> 382 Target range: 1408536 -> 1409528 283 : AsnThrTrpValIleLeuIleLysThrCysLeuPheTyrPheSerMetAsnLeuGl : 301 ||| !!:: !!!:||||||||| ! !:!!!:!|||.!.:!!:!! !! !|| AsnGlyPheLysMetLeuIleLysPheValValTyrTyrMetAlaValCysSerGl 1408537 : AATGGATTTAAAATGTTGATCAAATTTGTTGTATATTACATGGCTGTGTGCTCAGA : 1408591 302 : uAlaPheThrPheCysPheAlaGlyGluTyrLeuSerThrGluSer >>>> Tar : 317 |||||||! !!:!|||||||||||||||||||||!:!! !:!! ! uAlaPheIleTyrCysPheAlaGlyGluTyrLeuAsnIleLysVal++ 1408592 : AGCGTTCATATACTGCTTTGCTGGAGAGTACCTTAATATCAAGGTCgt........ : 1408641 318 : get Intron 1 >>>> <->LysIleIleGlyAspAlaAlaTyrAsnSerLeuT : 328 411 bp |||:::|||||||||.!!||||||.!.! !|||| ++SerLysLeuIleGlyAspThrAlaTyrGluPheLeuT 1408642 : .................agagtaaactgattggagACACGGCGTATGAATTTCTTT : 1409086 329 : rpTyrGluSerThrSerLysAspThrGlnIleIleLeuPheLeuIleMetArgSer : 346 |||||.!.! ! !||||||!!:!:!!:!:!!!!:|||.!!:!!|||:!:|||||| rpTyrAsnMetHisSerLysGluSerArgLeuMetLeuLeuValIleLeuArgSer 1409087 : GGTATAATATGCATTCGAAGGAAAGCCGACTTATGTTGCTTGTAATACTACGATCA : 1409140 347 : GlnAsnGlnLeuThrIleThrIleGlyLysIleThrAspMetSerLeuLysArgPh : 365 |||!!. !!!!|||...|||...||||||.........:!:|||:!!:!!!!!|| GlnLysGlyPheThrPheThrPheGlyLysPheAlaSerLeuSerMetGluSerPh 1409141 : CAGAAAGGATTTACtttcacttttggaaaatttgcaagtCTTTCCATGGAAAGTTT : 1409197 366 : eSerAsp >>>> Target Intron 2 >>>> IleValLysAlaSerAlaSe : 374 |:!!! ! 278 bp |||:!!|||||||||||||| eAlaGly++ ++IleMetLysAlaSerAlaSe 1409198 : TGCAGGCgt.........................agattATGAAAGCTTCTGCATC : 1409502 375 : rTyrIleSerValLeuLeuAlaMet : 382 ||||||||||||||||||||||||| rTyrIleSerValLeuLeuAlaMet 1409503 : GTATATATCCGTATTGCTCGCAATG : 1409528 vulgar: CbirOr138 282 382 . KQ414716.1 1408536 1409528 + 206 M 34 102 5 0 2 I 0 407 3 0 2 G 0 3 M 51 153 5 0 2 I 0 274 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408537 1409528 206 + . gene_id 2 ; sequence CbirOr138 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408537 1408638 . + . KQ414716.1 exonerate:protein2genome:local exon 1408537 1408638 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408639 1408640 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408639 1409049 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1409048 1409049 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409053 1409205 . + . KQ414716.1 exonerate:protein2genome:local exon 1409053 1409205 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1409206 1409207 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1409206 1409483 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1409482 1409483 . + . intron_id 1 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409484 1409528 . + . KQ414716.1 exonerate:protein2genome:local exon 1409484 1409528 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408537 1409528 206 + . alignment_id 2 ; Query CbirOr138 ; Align 1408537 283 102 ; Align 1409053 317 153 ; Align 1409484 368 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr138 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 5 -> 82 Target range: 1390538 -> 1390769 6 : AlaIleAsnArgSerValGluIleLeuLeuArgIleCysGlyLeuTrpThrGlySe : 24 ::!|||!:!||| !!||||||||| !||||||:!! !|||:!!||| !!||||| SerIleSerArgProValGluIleGlyLeuArgLeuThrGlyIleTrpProGlySe 1390539 : AGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGGAATTTGGCCAGGTTC : 1390593 25 : rProTyrAlaProPheCysLysLeuTyrTrpThrPheSerPheSerIleThrIleI : 43 | !!|||! ! !.!! !::!:!! !|||! !.!! !.!.!!!:!!..! !| rSerTyrGluIleIleValArgValThrTrpIleIleLeuMetThrValValGlnI 1390594 : ATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTATGACAGTTGTACAAA : 1390650 44 : leLeuSerPheGlnTyrIleIleLysTyrLeuGlnAspThrAspLeuProGluLeu : 61 ||!!!..!!:!!:!||||||||||||:!!|||.!.! !!:!:!!||| !!.!.||| lePheGlnTyrArgTyrIleIleLysHisLeuAspGlySerAsnLeuAlaAsnLeu 1390651 : TATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGTAATCTGGCGAACTTA : 1390704 62 : MetGluThrPheSerValPheValValAsnIleLeuValPheCysLysLeuValIl : 80 !!:!!:!:! !!.!!..! !:!! ! !!! !|||:!!!:! ||||||:::|| IleAspSerValGlyThrThrLeuProTyrSerLeuLeuTyrValLysLeuIleIl 1390705 : ATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTATgtcaaattaattat : 1390761 81 : ePheTrp : 82 ||||||| ePheTrp 1390762 : tttctgg : 1390769 vulgar: CbirOr138 5 82 . KQ414716.1 1390538 1390769 + 146 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390539 1390769 146 + . gene_id 3 ; sequence CbirOr138 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1390539 1390769 . + . KQ414716.1 exonerate:protein2genome:local exon 1390539 1390769 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390539 1390769 146 + . alignment_id 3 ; Query CbirOr138 ; Align 1390539 6 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr138 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 230 -> 275 Target range: 1401093 -> 1401228 231 : MetValGluLysIleIleThrArgHisGlnAspIleIleAlaPheSerLysLysIl : 249 ...:::::: ...|||..!|||||||||!!:||||||!.!|||:!!:!!!:!|| GlnIleLysPhePheIleAsnArgHisGlnGluIleIleValPheAlaGluArgIl 1401094 : caaataaaattcttcattaACAGACATCAGGAAATTATTGTTTTTGCAGAAAGAAT : 1401148 250 : eGluLysLeuTyrSerTyrIleAlaLeuValGlnPheLeuSerAspThrLeuLeuI : 268 ||||||||||!:!!!!|||!!:|||||| !|||.!!:!!|||:!!|||:!!:!!| eGluLysLeuPheThrTyrMetAlaLeuSerGlnLeuValSerAsnThrIleIleI 1401149 : TGAGAAACTTTTTACATACATGGCTCTCAGTCAACTTGTGTCCAATACGATAATTA : 1401205 269 : leCysGlyLeuGlyPheIleLeu : 275 ||||| !!:!!||||||:!!:!! leCysCysValGlyPheLeuVal 1401206 : TATGTTGCGTAGGATTTCTCGTT : 1401228 vulgar: CbirOr138 230 275 . KQ414716.1 1401093 1401228 + 125 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401094 1401228 125 + . gene_id 4 ; sequence CbirOr138 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1401094 1401228 . + . KQ414716.1 exonerate:protein2genome:local exon 1401094 1401228 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401094 1401228 125 + . alignment_id 4 ; Query CbirOr138 ; Align 1401094 231 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr138 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 87 -> 201 Target range: 1405764 -> 1406100 88 : LeuAspGluLeuLeuAlaIleMetAlaMetAspTrpLysLysAsnIleAspThrAs : 106 ||| !!!!::!!:!!:!!! !|||! ! |||!! |||||| !! !! ! || LeuTyrAspIleIleSerThrMetGluGluAspCysLysLysTyrAlaValLeuAs 1405765 : CTTTACGACATTATCTCGACCATGGAAGAAGACTGTAAAAAGTACGCTGTTCttga : 1405819 107 : pLeuAsnAlaHisIleMetAlaLysLysAlaAsnLeuSerArgTyrPheSerAsnT : 125 | ... ::::::::::::||| !|||:!!|||||| ! !!.!!!|||! p---ThrLysAsnLeuIleSerLysThrAlaHisLeuSerPheArgLeuThrAsnI 1405820 : t---acaaaaaatttaatatcaaaaaCAGCACATCTATCTTTTCGATTAACCAATA : 1405873 126 : hrLeuValValIleTyrSerGlySerValLeuAlaTyrSerIleValIleLeuAla : 143 !:!!:!! !|||! ! !..!|||..! !..!|||:!!|||! !:!!|||||| leValIleCysIleCysValSerSerThrAlaCysTyrAlaIleGlyValLeuAla 1405874 : TAGTGATATGTATCTGTGTATCATCCACGGCATGTTATGCAATTGGAGTTTTGGCG : 1405927 144 : ThrAsnIlePheSerAsnGluSerSerGluArgSerLeuLeuIleLysMetAsnLe : 162 !!.!. !!!||| !!!!:!! |||..!|||||||||||||||:!!|| ProGln---ArgThrAsnIleThrAlaProArgGluLeuLeuIleLysMetAspLe 1405928 : CCACAA---AGGACTAATATAACAGCACCTCGAGAACTTTTGATAAAAATGGACTT : 1405981 163 : uProPheAspSerAsnArgGlnPheValHisGluPheValMetLeuAsnGlnLeuP : 181 |||||||:!!!!!|||!.!..! !:!!:!!|||.!.|||!!::!! |||! !. uProPheAsnThrAsnAsnSerProIleTyrGluLeuValIleValLeuGlnTyrL 1405982 : GCCATTTAATACGAACAATTCGCCTATTTACGAGCTGGTAATAGTTTTACAATACC : 1406038 182 : heGlnLeuLeuMetLeuAlaSerAlaAspAlaIleLeuAsnAlaLeuLeuIleThr : 199 !. !:!! ! !|||! !.!! !!.!:!!!!!!:!::!||||||:!:! ! euCysLysValSerThrAlaPheThrPheGlyValPheSerSerLeuLeuLeuMet 1406039 : TATGCAAAGTATCGACAGCTTTTACGTTTGGTGTATTCAGCAGTCTGCTTTTGATG : 1406092 200 : MetVal : 201 |||||| MetVal 1406093 : ATGGTA : 1406100 vulgar: CbirOr138 87 201 . KQ414716.1 1405764 1406100 + 117 M 19 57 G 1 0 M 38 114 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1405765 1406100 117 + . gene_id 5 ; sequence CbirOr138 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1405765 1406100 . + . KQ414716.1 exonerate:protein2genome:local exon 1405765 1406100 . + . insertions 0 ; deletions 2 KQ414716.1 exonerate:protein2genome:local similarity 1405765 1406100 117 + . alignment_id 5 ; Query CbirOr138 ; Align 1405765 88 57 ; Align 1405822 108 114 ; Align 1405936 147 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr141 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 351 Query range: 201 -> 383 Target range: 1394161 -> 1395911 202 : IleLeuHisAlaGlyGlyGlnIleAsnIleLeuHisSerTrpLeuIleGluLeuVa : 220 |||!!!||| !||||||||||||.!.!!:|||!!.!.! ||| ...::: IlePheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAsnIleSe 1394162 : ATATTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaatatttc : 1394216 221 : lProArgLysGluLysGluArgAspAspSerIleValValMetThrAsnLysIleI : 239 ::: ! ||||||.!.||| ...!!!! !..! |||!!...!:!!| rIleLysAspGluLysHisArgLeuSerArgAsnThr------ThrLysSerLeuI 1394217 : tattaaagATGAGAAACACAGATTATCGAGAAACACC------ACCAAATCATTAA : 1394267 240 : leGlnLysHisGlnLysIleIleSerPheLeuGluTyrIleGluAspLeuTyrThr : 257 ||!!.!:!|||!!.::!||||||! ! !! !!!:! !||||||..!|||!:!:!! leHisArgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSer 1394268 : TTCACAGACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCA : 1394321 258 : TyrIleAlaLeuValGlnPheIleSerAsnThrMetLeuMetCysSerLeuGlyPh : 276 ||||||||||||:!!|||!:::!!!!!||||||:!::!!!!:|||!!!:!!||||| TyrIleAlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGlyPh 1394322 : TACATTGCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGATT : 1394378 277 : eLeuIle >>>> Target Intron 1 >>>> AlaIleGlyAsnProAspAl : 285 ||||||| 470 bp |||.!!..!!.. eLeuIle++ ++AlaPheAsnThrAspGlyAs 1394379 : CTTAATAgt.........................agGCATTTAATACAGatggaaa : 1394875 286 : aThrGluGlnIleValArgSerLeuLeuPheTyrAlaValThrAsnLeuGluValP : 304 ::: ...:::::::::|||||||||||| !!.!! !!.!:!!|||!.!| nIleLysThrPheIleLysThrLeuLeuPheTyrIleAlaIleThrMetGluAlaP 1394876 : tataaaaacatttataaaaacattACTCTTTTACATCGCTATCACTATGGAAGCAT : 1394932 305 : heIlePheCysTyrAlaGlyGluTyrLeuLysAsnLys >>>> Target Intr : 317 ||||||||! !!:!|||||||||||||||!..|||||| 353 bp heIlePheSerPheAlaGlyGluTyrLeuSerAsnLys++ 1394933 : TCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAAgt................ : 1394973 318 : on 2 >>>> ThrThrAlaIleGlyMetAlaAlaTyrAsnSerAlaTrpTyrGlu : 331 !:! !:!!|||.!!! |||||||||!:!||| !!|||||| ++SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeu 1394974 : .........agAGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTT : 1395366 332 : LeuLysProLysHisSerArgProLeuIlePheIleIleLeuArgAlaGlnLysGl : 350 ||| ! |||:!! !!!!!!.! !:!!|||.!!:!!!!::!!|||:!!|||!:!!: LeuAspProGlnAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgAr 1395367 : CTGGATCCTCAAGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACG : 1395423 351 : nLeuThrIleThrValGlyLysIleMetAspLeuSerLeuGluCysPheAlaSer : 369 !||||||||||||!.!||||||.!!|||||||||||||||||| !!||||||!:! gLeuThrIleThrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsn+ 1395424 : ATTAACAATCACCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATg : 1395480 370 : >>>> Target Intron 3 >>>> IleMetLysAlaSerGlySerTyrLeuS : 378 387 bp |||:!:|||||||||!.!||||||:!!| + ++IleLeuLysAlaSerAlaSerTyrIleS 1395481 : t.........................agatcTTAAAGGCTTCTGCATCGTACATAT : 1395894 379 : erIleLeuLeuAlaMet : 383 ||:!!|||! !|||||| erValLeuTyrAlaMet 1395895 : CTGTACTGTATGCGATG : 1395911 vulgar: CbirOr141 201 383 . KQ414716.1 1394161 1395911 + 351 M 31 93 G 2 0 M 44 132 5 0 2 I 0 466 3 0 2 M 38 114 5 0 2 I 0 349 3 0 2 M 52 156 5 0 2 I 0 383 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394162 1395911 351 + . gene_id 1 ; sequence CbirOr141 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394162 1394386 . + . KQ414716.1 exonerate:protein2genome:local exon 1394162 1394386 . + . insertions 0 ; deletions 2 KQ414716.1 exonerate:protein2genome:local splice5 1394387 1394388 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394387 1394856 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394855 1394856 . + . intron_id 0 ; splice_site "aG" KQ414716.1 exonerate:protein2genome:local cds 1394857 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394857 1394970 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394971 1394972 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394971 1395323 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1395322 1395323 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1395324 1395479 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395479 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1395480 1395481 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1395480 1395866 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1395865 1395866 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1395867 1395911 . + . KQ414716.1 exonerate:protein2genome:local exon 1395867 1395911 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394162 1395911 351 + . alignment_id 1 ; Query CbirOr141 ; Align 1394162 202 93 ; Align 1394255 235 132 ; Align 1394857 279 114 ; Align 1395324 317 156 ; Align 1395867 369 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr141 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 333 Query range: 201 -> 383 Target range: 1387110 -> 1387955 202 : IleLeuHisAlaGlyGlyGlnIleAsnIleLeuHisSerTrpLeuIleGluLeuVa : 220 |||||||||!.!||||||||||||:!!:!!||| !..! :!!! !!!::!! IleLeuHisValGlyGlyGlnIleAspLeuLeuCysGlnAsnMetArgAspIleSe 1387111 : ATATTACATGTTGGTGGTCAGATCGATTTATTGTGTCAAAACATGAGAGACATTTC : 1387165 221 : lProArgLysGluLysGluArgAspAspSerIleValValMetThrAsnLysIleI : 239 !! !!.! ! ||||||:!! ! .!.!.!:!:..!:!! !!. ! :!!: rArgAsnHisGluLysLysValProGlnLysLeuThrIle------LysAspValV 1387166 : TCGTAATCATGAGAAGAAAGTACCGCAAAAACTGACAATA------AAGGATGTCG : 1387216 240 : leGlnLysHisGlnLysIleIleSerPheLeuGluTyrIleGluAspLeuTyrThr : 257 !! !:!||||||::!|||||| !!.!.! !:!! !!|||||| :!!!:!||| alValArgHisGlnArgIleIleArgLeuSerLysAsnIleGluThrValPheThr 1387217 : TTGTTAGGCATCAACGAATTATACGACTGTCTAAAAATATCGAGACAGTTTTTACT : 1387270 258 : TyrIleAlaLeuValGlnPheIleSerAsnThrMetLeuMetCysSerLeuGlyPh : 276 ||||||:!!||| ||||||:::|||||| :!!:!!!!:|||! !:!!.!!|| TyrIleSerLeuCysGlnPheLeuSerAsnMetLeuValIleCysPheIleSerPh 1387271 : TATATATCATTATgccaatttttatcgaatatgcTGGTTATCTGTTTCATAAGCTT : 1387327 277 : eLeuIle >>>> Target Intron 1 >>>> AlaIleGlyAsnProAspAl : 285 |:!!:!: 91 bp :!!:!:..!!.. !.!..! eValLeu++ ++SerLeuAsnThrGluGlnTh 1387328 : CGTTTTGgt.........................agTCCTTGAACACGGAACAGAC : 1387445 286 : aThrGluGlnIleValArgSerLeuLeuPheTyrAlaValThrAsnLeuGluValP : 304 !|||! ! !|||:!!!:!!!!!!!! !!:!|||!.!!.!..!|||! !|||!.!| rThrGlyLeuIleLeuLysCysPheProTyrTyrValAlaValAsnCysGluAlaP 1387446 : AACTGGATTAATACTGAAATGTTTTCCCTATTACGTTGCTGTTAATTGTGAAGCAT : 1387502 305 : heIlePheCysTyrAlaGlyGluTyrLeuLysAsnLys >>>> Target Intr : 317 |||||!!.||||||.!!||||||||||||! ::!||| 79 bp heIleLeuCysTyrThrGlyGluTyrLeuThrSerLys++ 1387503 : TCATTTTATGTTATACCGGAGAATATCTAACCTCTAAGgt................ : 1387543 318 : on 2 >>>> ThrThrAlaIleGlyMetAlaAlaTyrAsnSerAlaTrpTyrGlu : 331 ::: ! !||| !...:!:...|||||| ||||||!!: ++SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAsp 1387544 : .........agagtgAACGTATTACACAATCtgtgtacaattttctttggTACGAT : 1387662 332 : LeuLysProLysHisSerArgProLeuIlePheIleIleLeuArgAlaGlnLysGl : 350 |||||||||::!.!.:!!||| ::::::...||||||||||||:!!||||||:! LeuLysProArgGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGl 1387663 : CTAAAACCTCGAGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGA : 1387719 351 : nLeuThrIleThrValGlyLysIleMetAspLeuSerLeuGluCysPheAlaSer : 369 !|||! !:!!|||!.!||||||.!!:!!:!!|||||||||! ...||||||!:: uLeuIleLeuThrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn+ 1387720 : GTTAATACTCACTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtg : 1387776 370 : >>>> Target Intron 3 >>>> IleMetLysAlaSerGlySerTyrLeuS : 378 135 bp ::::!:|||||||||!.!||||||:!!| + ++MetLeuLysAlaSerAlaSerTyrValS 1387777 : t.........................agatgCTAAAAGCTTCAGCCTCGTACGTAT : 1387938 379 : erIleLeuLeuAlaMet : 383 ||:!!|||! !|||||| erValLeuHisAlaMet 1387939 : CTGTTTTGCATGCAATG : 1387955 vulgar: CbirOr141 201 383 . KQ414716.1 1387110 1387955 + 333 M 32 96 G 2 0 M 43 129 5 0 2 I 0 87 3 0 2 M 38 114 5 0 2 I 0 75 3 0 2 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387111 1387955 333 + . gene_id 2 ; sequence CbirOr141 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387111 1387335 . + . KQ414716.1 exonerate:protein2genome:local exon 1387111 1387335 . + . insertions 0 ; deletions 2 KQ414716.1 exonerate:protein2genome:local splice5 1387336 1387337 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1387336 1387426 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387425 1387426 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387427 1387540 . + . KQ414716.1 exonerate:protein2genome:local exon 1387427 1387540 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387541 1387542 . + . intron_id 2 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387541 1387619 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1387618 1387619 . + . intron_id 1 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 3 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387111 1387955 333 + . alignment_id 2 ; Query CbirOr141 ; Align 1387111 202 96 ; Align 1387207 236 129 ; Align 1387427 279 114 ; Align 1387620 317 156 ; Align 1387911 369 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr141 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 217 Query range: 276 -> 383 Target range: 1408515 -> 1409528 277 : LeuIleAlaIleGlyAsnProAspAlaThrGluGlnIleValArgSerLeuLeuPh : 295 ||| |||:!! !||| !:!!!.! !:!!..!:!::!!!:!! !:!!:!!!: LeuGlnAlaLeuGlnAsnAsnAsnGlyPheLysMetLeuIleLysPheValValTy 1408516 : TTACAGGCACTACAAAATAATAATGGATTTAAAATGTTGATCAAATTTGTTGTATA : 1408570 296 : eTyrAlaValThrAsnLeuGluValPheIlePheCysTyrAlaGlyGluTyrLeuL : 314 !||| !!.!..! !! !|||!.!||||||!:!|||!:!|||||||||||||||! rTyrMetAlaValCysSerGluAlaPheIleTyrCysPheAlaGlyGluTyrLeuA 1408571 : TTACATGGCTGTGTGCTCAGAAGCGTTCATATACTGCTTTGCTGGAGAGTACCTTA : 1408627 315 : ysAsnLys >>>> Target Intron 1 >>>> ThrThrAlaIleGlyMetA : 323 !.! !||| 414 bp ::: |||||| . snIleLys++ ++SerLysLeuIleGlyAspT 1408628 : ATATCAAGgt.........................agagtaaactgattggagACA : 1409068 324 : laAlaTyrAsnSerAlaTrpTyrGluLeuLysProLysHisSerArgProLeuIle : 341 !!||||||.!.! ! !||||||.!.:!! ! !!|||.!.||||||! !:!!:!: hrAlaTyrGluPheLeuTrpTyrAsnMetHisSerLysGluSerArgLeuMetLeu 1409069 : CGGCGTATGAATTTCTTTGGTATAATATGCATTCGAAGGAAAGCCGACTTATGTTG : 1409122 342 : PheIleIleLeuArgAlaGlnLysGlnLeuThrIleThrValGlyLysIleMetAs : 360 .!!:!!|||||||||:!!|||||| !!!!|||...||| ||||||... .. LeuValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysPheAlaSe 1409123 : CTTGTAATACTACGATCACAGAAAGGATTTACtttcacttttggaaaatttgcaag : 1409179 361 : pLeuSerLeuGluCysPheAlaSer >>>> Target Intron 2 >>>> Il : 369 .||||||:!!||| !!||||||.!! 278 bp || rLeuSerMetGluSerPheAlaGly++ ++Il 1409180 : tCTTTCCATGGAAAGTTTTGCAGGCgt.........................agat : 1409484 370 : eMetLysAlaSerGlySerTyrLeuSerIleLeuLeuAlaMet : 383 |||||||||||||!.!||||||:!!|||:!!|||||||||||| eMetLysAlaSerAlaSerTyrIleSerValLeuLeuAlaMet 1409485 : tATGAAAGCTTCTGCATCGTATATATCCGTATTGCTCGCAATG : 1409528 vulgar: CbirOr141 276 383 . KQ414716.1 1408515 1409528 + 217 M 40 120 5 0 2 I 0 410 3 0 2 M 52 156 5 0 2 I 0 274 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408516 1409528 217 + . gene_id 3 ; sequence CbirOr141 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408516 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408516 1408635 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408636 1408637 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408636 1409049 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1409048 1409049 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409050 1409205 . + . KQ414716.1 exonerate:protein2genome:local exon 1409050 1409205 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1409206 1409207 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1409206 1409483 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1409482 1409483 . + . intron_id 1 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409484 1409528 . + . KQ414716.1 exonerate:protein2genome:local exon 1409484 1409528 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408516 1409528 217 + . alignment_id 3 ; Query CbirOr141 ; Align 1408516 277 120 ; Align 1409050 317 156 ; Align 1409484 369 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr141 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 0 -> 82 Target range: 1390523 -> 1390769 1 : MetThrArgGluSerThrIleAsnTyrThrLeuLysIleMetLeuIleLeuCysGl : 19 |||:!!!.!.!.!.!!:!|||!:! ! !!:!!:!!||| |||! ||| !|| MetSerHisAsnLysSerIleSerArgProValGluIleGlyLeuArgLeuThrGl 1390524 : ATGTCGCATAACAAAAGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGG : 1390578 20 : yValTrpProGlyArgProTyrIleThrIleCysArgAlaTyrTrpValIleAlaL : 38 |:!!||||||||| ! !!||| !! !||| !|||!.! !|||:!!||| !: yIleTrpProGlySerSerTyrGluIleIleValArgValThrTrpIleIleLeuM 1390579 : AATTTGGCCAGGTTCATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTA : 1390635 39 : euGlyIleAspGluIleCysHisPheArgTyrLeuLeuMetHisPheGlnTyrAsn : 56 !! !:!!! :!!|||! !!!.!:!||||||:!!:!!! !|||.!!.!. !!:! etThrValValGlnIlePheGlnTyrArgTyrIleIleLysHisLeuAspGlySer 1390636 : TGACAGTTGTACAAATATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGT : 1390689 57 : AspLeuPheAspLeuMetAspCysPheSerSerPheLeuThrGlnIleLysPheIl : 75 :!!||| :!!|||!!:||| !! !!.!!!!! !||| !! ! ! ! !!!. AsnLeuAlaAsnLeuIleAspSerValGlyThrThrLeuProTyrSerLeuLeuTy 1390690 : AATCTGGCGAACTTAATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTA : 1390746 76 : eThrLysLeuIleIlePheTrp : 82 !...|||||||||||||||||| rValLysLeuIleIlePheTrp 1390747 : Tgtcaaattaattattttctgg : 1390769 vulgar: CbirOr141 0 82 . KQ414716.1 1390523 1390769 + 144 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390524 1390769 144 + . gene_id 4 ; sequence CbirOr141 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1390524 1390769 . + . KQ414716.1 exonerate:protein2genome:local exon 1390524 1390769 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390524 1390769 144 + . alignment_id 4 ; Query CbirOr141 ; Align 1390524 1 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr141 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 268 -> 369 Target range: 1401287 -> 1402594 269 : MetLeuMetCysSerLeuGlyPheLeuIleAlaIleGlyAsnProAspAlaThrGl : 287 :!!:!!:!!||| ...||| |||:!! !! ! !:!!!.!..! ValIleLeuCysArgLys***IleLeuGlnAlaValHisIleAspAsnGlyValPr 1401288 : GTGATATTGTGtaggaaataaatattacaggCAGTACATATCGACAATGGAGTTCC : 1401342 288 : uGlnIleValArgSerLeuLeuPheTyrAlaValThrAsnLeuGlu >>>> Tar : 303 ! !:!!:!!!::|||||||||||||||...|||! ! !|||||| oLeuLeuLeuLysSerLeuLeuPheTyrValValIleCysLeuGlu+- 1401343 : TCTGTTACTCAaatctcttttattttatgtgGTTATTTGTTTAGAAgc........ : 1401392 304 : get Intron 1 >>>> ValPheIlePheCysTyrAlaGlyGluTyrLeuLysA : 315 1004 bp |||... ... ||| !!!!:::: +-ValLeuCysIleMetTyrLeuLysCysCysPheArgH 1401393 : .................atgttctttgtattatgtatttaaaatgttGCTTTCGTC : 1402430 316 : snLysThrThrAlaIleGlyMetAlaAlaTyrAsnSerAlaTrpTyrGluLeuLys : 333 !! !!!:! ! !||||||! .!!||||||.!.! ! !||||||!!:|||::: is***SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArg 1402431 : ATTAGAGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGT : 1402484 334 : ProLysHisSerArgProLeuIlePheIleIleLeuArgAlaGlnLysGlnLeuTh : 352 !!! .!.|||!:!! !|||||| !:!!|||||||||:!!|||||| !!!|| SerThrGluSerGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheTh 1402485 : TCAACTGAAAGCCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCAC : 1402541 353 : rIleThrValGlyLysIleMetAspLeuSerLeuGluCysPheAlaSerIle : 369 |...||| ||||||... ...|||||||||||| !!|||.!!:!!:!! rPheThrPheGlyLysPheSerSerLeuSerLeuGluSerPheThrAlaVal 1402542 : GTttacttttggaaaattttcaagtctCTCCTTGGAAAGCTTTACGGCCGTA : 1402594 vulgar: CbirOr141 268 369 . KQ414716.1 1401287 1402594 + 119 M 34 102 5 0 2 I 0 1000 3 0 2 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401288 1402594 119 + . gene_id 5 ; sequence CbirOr141 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401288 1401389 . + . KQ414716.1 exonerate:protein2genome:local exon 1401288 1401389 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401390 1401391 . + . intron_id 1 ; splice_site "GC" KQ414716.1 exonerate:protein2genome:local intron 1401390 1402393 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1402392 1402393 . + . intron_id 0 ; splice_site "at" KQ414716.1 exonerate:protein2genome:local cds 1402394 1402594 . + . KQ414716.1 exonerate:protein2genome:local exon 1402394 1402594 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401288 1402594 119 + . alignment_id 5 ; Query CbirOr141 ; Align 1401288 269 102 ; Align 1402394 303 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr142CTE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 358 Query range: 202 -> 365 Target range: 1394164 -> 1395473 203 : LeuHisAlaAlaGlyGlnIleAspIleLeuArgCysTrpLeuThrGln<->ArgVa : 220 !!!||| !!.!|||||||||!!:!!:|||!:! ||||||... :: PheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAsnIleSerIl 1394165 : TTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaatatttctat : 1394219 221 : lAspGluAsnLysHisGlySerValValIleThrIleSerLysIleIleGluLysH : 239 : :!:.!.|||||| !!! ! ! !! !|||! !!.!..!:!!|||.!.!:!| eLysAspGluLysHisArgLeuSerArgAsnThrThrLysSerLeuIleHisArgH 1394220 : taaagATGAGAAACACAGATTATCGAGAAACACCACCAAATCATTAATTCACAGAC : 1394276 240 : isGlnLysValIleGluPheSerGluAsnIleGluSerLeuTyrThrTyrIleAla : 257 ||!!.::!:!!||| !|||!!:::!||||||||||||!:!:!!||||||||| isHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIleAla 1394277 : ATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACATTGCT : 1394330 258 : LeuSerGlnPheValSerAsnThrIleMetIleCysSerLeuGlyPheLeuIleVa : 276 |||! !|||!:::!!!!!||||||:!!:!:||||||!!!:!!|||||||||||||| LeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGlyPheLeuIleVa 1394331 : TTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGATTCTTAATAGT : 1394387 277 : lMet >>>> Target Intron 1 >>>> AlaIleGlySerProAsnValVa : 285 |!!: 464 bp |||.!!..!!!! ... :: lIle++ ++AlaPheAsnThrAspGlyAsnIl 1394388 : AATTgt.........................agGCATTTAATACAGatggaaatat : 1394878 286 : lGluGlnIleLeuArgSerValLeuPheTyrThrIleThrSerLeuGluAlaPheI : 304 :::: ...:::::::::::!|||||||||! ! !! !!!!:!!|||||||||| eLysThrPheIleLysThrLeuLeuPheTyrIleAlaIleThrMetGluAlaPheI 1394879 : aaaaacatttataaaaacattACTCTTTTACATCGCTATCACTATGGAAGCATTCA : 1394935 305 : lePheCysPheAlaGlyGluTyrLeuAsnAsnLys >>>> Target Intron : 316 |||||! !||||||||||||||||||!:!|||||| 353 bp lePheSerPheAlaGlyGluTyrLeuSerAsnLys++ 1394936 : TCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAAgt................... : 1394973 317 : 2 >>>> SerLysAlaIleGlyAlaAlaAlaTyrAsnSerLeuTrpTyrAsnLeu : 331 ||| !:!!|||.!! !|||||||||!:!|||! !|||||| !||| ++SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeu 1394974 : ......agAGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTG : 1395369 332 : LysProLysAspSerArgValLeuLeuPheMetIleLeuArgSerGlnLysGlnLe : 350 ! |||:!!|||!!!!.!:!!:!!:!!.!!:!:!!::!!|||||||||!:!!:!|| AspProGlnAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLe 1395370 : GATCCTCAAGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATT : 1395426 351 : uThrLeuThrAlaGlyLysMetMetAspLeuSerLeuGlnSerPhe : 365 ||||:!!||||||||||||.!.|||||||||||||||:!!.!!||| uThrIleThrAlaGlyLysPheMetAspLeuSerLeuGluGlyPhe 1395427 : AACAATCACCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTT : 1395473 vulgar: CbirOr142CTE 202 365 . KQ414716.1 1394164 1395473 + 358 M 16 48 G 0 3 M 59 177 5 0 2 I 0 460 3 0 2 M 38 114 5 0 2 I 0 349 3 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394165 1395473 358 + . gene_id 1 ; sequence CbirOr142CTE ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394165 1394392 . + . KQ414716.1 exonerate:protein2genome:local exon 1394165 1394392 . + . insertions 3 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394393 1394394 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394393 1394856 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394855 1394856 . + . intron_id 0 ; splice_site "aG" KQ414716.1 exonerate:protein2genome:local cds 1394857 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394857 1394970 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394971 1394972 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394971 1395323 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1395322 1395323 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1395324 1395473 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395473 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394165 1395473 358 + . alignment_id 1 ; Query CbirOr142CTE ; Align 1394165 203 48 ; Align 1394216 219 177 ; Align 1394857 278 114 ; Align 1395324 316 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr142CTE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 325 Query range: 234 -> 365 Target range: 1408300 -> 1409199 235 : IleIleGluLysHisGlnLysValIleGluPheSerGluAsnIleGluSerLeuTy : 253 .!!|||...!:!||||||:!!:!!||| !|||:!!|||!..||||||!.!|||!: PheIleSerArgHisGlnGlnIleIleIlePheAlaGluArgIleGluLysLeuPh 1408301 : TTCATCAGCAGACATCAACAGATCATCATATTTGCAGAGAGAATAGAAAAACTGTT : 1408355 254 : rThrTyrIleAlaLeuSerGlnPheValSerAsnThrIleMetIleCysSerLeuG : 272 !||||||:!!||||||||||||.!!:!!|||||||||:!!!!:! !|||!!!:!!| eThrTyrLeuAlaLeuSerGlnLeuLeuSerAsnThrLeuIleThrCysCysValG 1408356 : TACGTATCTAGCACTTAGTCAACTTCTCTCGAATACCCTAATTACTTGCTGCGTGG : 1408412 273 : lyPheLeuIleValMet >>>> Target Intron 1 >>>> AlaIleGlyS : 281 ||!:!:!!|||!.!.!. 92 bp |||:!! !! lyTyrIleIleAlaPhe++ ++AlaLeuGlnA 1408413 : GTTATATTATCGCATTTgt.........................agGCACTACAAA : 1408531 282 : erProAsnValValGluGlnIleLeuArgSerValLeuPheTyrThrIleThrSer : 299 :! !|||! ! !!:!!..!:!::!!!:!! !|||:!!!:!|||! ! !..!!!! snAsnAsnGlyPheLysMetLeuIleLysPheValValTyrTyrMetAlaValCys 1408532 : ATAATAATGGATTTAAAATGTTGATCAAATTTGTTGTATATTACATGGCTGTGTGC : 1408585 300 : LeuGluAlaPheIlePheCysPheAlaGlyGluTyrLeuAsnAsnLys >>>> T : 316 ! !||||||||||||!:!||||||||||||||||||||||||! !||| SerGluAlaPheIleTyrCysPheAlaGlyGluTyrLeuAsnIleLys++ 1408586 : TCAGAAGCGTTCATATACTGCTTTGCTGGAGAGTACCTTAATATCAAGgt...... : 1408638 317 : arget Intron 2 >>>> SerLysAlaIleGlyAlaAlaAlaTyrAsnSerLe : 327 414 bp |||||| |||||| !.!!||||||.!.! !|| ++SerLysLeuIleGlyAspThrAlaTyrGluPheLe 1408639 : ...................agagtaaactgattggagACACGGCGTATGAATTTCT : 1409083 328 : uTrpTyrAsnLeuLysProLysAspSerArgValLeuLeuPheMetIleLeuArgS : 346 ||||||||||:!! ! !!|||!!:||||||:!!:!!|||.!!:!:|||||||||| uTrpTyrAsnMetHisSerLysGluSerArgLeuMetLeuLeuValIleLeuArgS 1409084 : TTGGTATAATATGCATTCGAAGGAAAGCCGACTTATGTTGCTTGTAATACTACGAT : 1409140 347 : erGlnLysGlnLeuThrLeuThrAlaGlyLysMetMetAspLeuSerLeuGlnSer : 364 |||||||| !!!!|||...||| ||||||... ...||||||:!!:!!||| erGlnLysGlyPheThrPheThrPheGlyLysPheAlaSerLeuSerMetGluSer 1409141 : CACAGAAAGGATTTACtttcacttttggaaaatttgcaagtCTTTCCATGGAAAGT : 1409194 365 : Phe : 365 ||| Phe 1409195 : TTT : 1409199 vulgar: CbirOr142CTE 234 365 . KQ414716.1 1408300 1409199 + 325 M 43 129 5 0 2 I 0 88 3 0 2 M 38 114 5 0 2 I 0 410 3 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1408301 1409199 325 + . gene_id 2 ; sequence CbirOr142CTE ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1408301 1408429 . + . KQ414716.1 exonerate:protein2genome:local exon 1408301 1408429 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408430 1408431 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408430 1408521 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1408520 1408521 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1408522 1408635 . + . KQ414716.1 exonerate:protein2genome:local exon 1408522 1408635 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1408636 1408637 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1408636 1409049 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1409048 1409049 . + . intron_id 1 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409050 1409199 . + . KQ414716.1 exonerate:protein2genome:local exon 1409050 1409199 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1408301 1409199 325 + . alignment_id 2 ; Query CbirOr142CTE ; Align 1408301 235 129 ; Align 1408522 278 114 ; Align 1409050 316 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr142CTE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 236 Query range: 202 -> 365 Target range: 1387113 -> 1387769 203 : LeuHisAlaAlaGlyGlnIleAspIleLeu<->ArgCysTrpLeuThrGlnArgVa : 220 ||||||!.!!.!||||||||||||:!!||| !:! ! ! ! ! ! LeuHisValGlyGlyGlnIleAspLeuLeuCysGlnAsnMetArgAspIleSerAr 1387114 : TTACATGTTGGTGGTCAGATCGATTTATTGTGTCAAAACATGAGAGACATTTCTCG : 1387168 221 : lAspGluAsnLysHisGlySerValValIleThrIleSerLysIleIleGluLysH : 239 !:!!.!..!.||| ! ! ! !! ! !:!:||||||!.! ! :!!:!!! !:!| gAsnHisGluLysLysValProGlnLysLeuThrIleLysAspValValValArgH 1387169 : TAATCATGAGAAGAAAGTACCGCAAAAACTGACAATAAAGGATGTCGTTGTTAGGC : 1387225 240 : isGlnLysValIleGluPheSerGluAsnIleGluSerLeuTyrThrTyrIleAla : 257 |||||::!:!!|||..!.!.|||:!!|||||||||!!!:!!!:!|||||||||:!! isGlnArgIleIleArgLeuSerLysAsnIleGluThrValPheThrTyrIleSer 1387226 : ATCAACGAATTATACGACTGTCTAAAAATATCGAGACAGTTTTTACTTATATATCA : 1387279 258 : LeuSerGlnPheValSerAsnThrIleMetIleCysSerLeuGlyPheLeuIle : 276 |||! ||||||:::|||||| :!::!:||||||! !:!!.!!|||:!!:!: LeuCysGlnPheLeuSerAsnMetLeuValIleCysPheIleSerPheValLeu++ 1387280 : TTATgccaatttttatcgaatatgcTGGTTATCTGTTTCATAAGCTTCGTTTTGgt : 1387336 277 : >>>> Target Intron 1 >>>> ValMetAlaIleGlySerProAsnValVa : 285 164 bp ! ! !! !! !|||.!. !:! ++HisSerPheTyrValIleProGluAsnIl 1387337 : .........................agCATTCATTTTATGTTATACCGGAGAATAT : 1387527 286 : lGluGlnIleLeuArgSerValLeuPheTyrThrIleThrSerLeuGluAlaPheI : 304 ! !!! :!! ...::: :::||| ... ::: e***ProLeuArg***GluIleLysValHisThrLysArgLysLysLysArgGlyA 1387528 : CTAACCTCTAAGgtaagaaataaaagtacacacaaaaagaaagaaaaaaagaggag : 1387584 305 : lePheCysPheAlaGlyGluTyrLeuAsnAsnLysSerLysAlaIleGlyAlaAla : 322 ||| ||| :::::: |||:!! !||| ! !:!: spPheIlePhe***GlnCysPheValPhePhe***SerGluArgIleThrGlnSer 1387585 : attttatattttgacagtgttttgtttttttttagagtgAACGTATTACACAATCt : 1387638 323 : AlaTyrAsnSerLeuTrpTyrAsnLeuLysProLysAspSerArgValLeuLeuPh : 341 ...|||||| |||||||||:!!|||||||||::!!!::!!|||::::::|||.. ValTyrAsnPheLeuTrpTyrAspLeuLysProArgGluAlaArgIleValLeuLe 1387639 : gtgtacaattttctttggTACGATCTAAAACCTCGAGAAGCTCgtattgtattatt : 1387695 342 : eMetIleLeuArgSerGlnLysGlnLeuThrLeuThrAlaGlyLysMetMetAspL : 360 .:::||||||||||||||||||:!!|||! !|||||||||||||||.!.:!!:!!| uIleIleLeuArgSerGlnLysGluLeuIleLeuThrAlaGlyLysPheValAsnL 1387696 : aataatattacgaTCTCAGAAAGAGTTAATACTCACTGCGGGCAAATTTGTGAATC : 1387752 361 : euSerLeuGlnSerPhe : 365 |||||||| :!!||| euSerLeuAlaAlaPhe 1387753 : TTTCCTTGGCTGCATTT : 1387769 vulgar: CbirOr142CTE 202 365 . KQ414716.1 1387113 1387769 + 236 M 10 30 G 0 3 M 63 189 5 0 2 I 0 160 3 0 2 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387114 1387769 236 + . gene_id 3 ; sequence CbirOr142CTE ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387114 1387335 . + . KQ414716.1 exonerate:protein2genome:local exon 1387114 1387335 . + . insertions 3 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387336 1387337 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1387336 1387499 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387498 1387499 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387500 1387769 . + . KQ414716.1 exonerate:protein2genome:local exon 1387500 1387769 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387114 1387769 236 + . alignment_id 3 ; Query CbirOr142CTE ; Align 1387114 203 30 ; Align 1387147 213 189 ; Align 1387500 276 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr142CTE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 221 Query range: 231 -> 315 Target range: 1401096 -> 1401431 232 : IleSerLysIleIleGluLysHisGlnLysValIleGluPheSerGluAsnIleGl : 250 |||... ...|||.!.!:!||||||:!!:!!|||! |||:!!|||!..||||| IleLysPhePheIleAsnArgHisGlnGluIleIleValPheAlaGluArgIleGl 1401097 : ataaaattcttcattaACAGACATCAGGAAATTATTGTTTTTGCAGAAAGAATTGA : 1401151 251 : uSerLeuTyrThrTyrIleAlaLeuSerGlnPheValSerAsnThrIleMetIleC : 269 |!.!|||!:!||||||!!:||||||||||||.!!|||||||||||||||!!:|||| uLysLeuPheThrTyrMetAlaLeuSerGlnLeuValSerAsnThrIleIleIleC 1401152 : GAAACTTTTTACATACATGGCTCTCAGTCAACTTGTGTCCAATACGATAATTATAT : 1401208 270 : ysSerLeuGlyPheLeuIleValMetAla{I} >>>> Target Intron 1 > : 279 ||!!!:!!|||||||||:!!|||!!:!.!{|} 83 bp ysCysValGlyPheLeuValValIleVal{I}++ 1401209 : GTTGCGTAGGATTTCTCGTTGTAATTGTA{A}gt...................... : 1401241 280 : >>> {le}GlySerProAsnValValGluGlnIleLeuArgSerValLeuPheTy : 295 {||} !! ! !|||! !||| ! !:!!|||!::|||:::|||||||| ++{le}HisIleAspAsnGlyValProLeuLeuLeuLysSerLeuLeuPheTy 1401242 : ...ag{TA}CATATCGACAATGGAGTTCCTCTGTTACTCAaatctcttttatttta : 1401369 296 : rThrIleThrSerLeuGluAlaPheIlePheCysPheAlaGlyGluTyrLeuAsnA : 314 |...:!!! !!!!|||||||||||||||!:!||||||!.!||||||||||||!:!! rValValIleCysLeuGluAlaPheIleTyrCysPheValGlyGluTyrLeuSerI 1401370 : tgtgGTTATTTGTTTAGAAGCGTTTATATACTGCTTTGTCGGAGAATATCTCAGTA : 1401426 315 : snLys : 315 !||| leLys 1401427 : TCAAG : 1401431 vulgar: CbirOr142CTE 231 315 . KQ414716.1 1401096 1401431 + 221 M 47 141 S 0 1 5 0 2 I 0 79 3 0 2 S 1 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401097 1401431 221 + . gene_id 4 ; sequence CbirOr142CTE ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401097 1401238 . + . KQ414716.1 exonerate:protein2genome:local exon 1401097 1401238 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401239 1401240 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401239 1401321 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1401320 1401321 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1401322 1401431 . + . KQ414716.1 exonerate:protein2genome:local exon 1401322 1401431 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401097 1401431 221 + . alignment_id 4 ; Query CbirOr142CTE ; Align 1401097 232 141 ; Align 1401324 280 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr142CTE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 0 -> 86 Target range: 1390523 -> 1390781 1 : MetLeuArgLysSerThrLeuAsnArgThrIleLysPheLeuLeuIleLeuPheGl : 19 |||! !!.!!!.!.!!:!:!!!:!||| !!:!::!!.!! !|||! ||| !|| MetSerHisAsnLysSerIleSerArgProValGluIleGlyLeuArgLeuThrGl 1390524 : ATGTCGCATAACAAAAGCATCAGTCGCCCAGTGGAAATTGGCCTAAGGTTAACTGG : 1390578 20 : yIleTrpProGlyThrSerTyrIleLeuValCysArgGlyPheTrpIleIleThrI : 38 |||||||||||||:!!|||||| !:!!:!! !|||! ! !||||||||| !! yIleTrpProGlySerSerTyrGluIleIleValArgValThrTrpIleIleLeuM 1390579 : AATTTGGCCAGGTTCATCTTACGAAATTATCGTCCGAGTAACTTGGATAATTCTTA : 1390635 39 : leGlyPheIleGluPheCysHisTyrArgTyrPheValThrHisIleTyrSerAla : 56 !: ! !!:!!:!!.!.! !!!.|||||||||.!.:!!! !|||:!! !!.!!::! etThrValValGlnIlePheGlnTyrArgTyrIleIleLysHisLeuAspGlySer 1390636 : TGACAGTTGTACAAATATTCCAATATCGATATATAATAAAGCATCTCGATGGTAGT : 1390689 57 : GluLeuLeuAspLeuIleAspCysThrCysSerPheLeuAlaHisAlaLysValLe : 75 .!.||| !:!!||||||||| !!..! !!!!! !||| !!:!!::! !:!!! AsnLeuAlaAsnLeuIleAspSerValGlyThrThrLeuProTyrSerLeuLeuTy 1390690 : AATCTGGCGAACTTAATAGACAGCGTCGGCACTACTTTACCTTACAGTCTGTTGTA : 1390746 76 : uIleLysPheIleValPheTrpLeuAsnGlnGly : 86 !:::|||...|||:::|||||| !!!.!::||| rValLysLeuIleIlePheTrpThrLysArgGly 1390747 : TgtcaaattaattattttctggaCTAAACGTGGG : 1390781 vulgar: CbirOr142CTE 0 86 . KQ414716.1 1390523 1390781 + 164 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1390524 1390781 164 + . gene_id 5 ; sequence CbirOr142CTE ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1390524 1390781 . + . KQ414716.1 exonerate:protein2genome:local exon 1390524 1390781 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1390524 1390781 164 + . alignment_id 5 ; Query CbirOr142CTE ; Align 1390524 1 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr142CTE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 315 -> 366 Target range: 1402435 -> 1402588 316 : SerLysAlaIleGlyAlaAlaAlaTyrAsnSerLeuTrpTyrAsnLeuLysProLy : 334 |||:!! !|||||| !.!!||||||.!.! !|||||||||:!!|||::: !!! SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerTh 1402436 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAAC : 1402490 335 : sAspSerArgValLeuLeuPheMetIleLeuArgSerGlnLysGlnLeuThrLeuT : 353 !!:|||!:!:!!|||:!! !:!:|||||||||||||||||| !!!|||!..| rGluSerGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheT 1402491 : TGAAAGCCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACGTtta : 1402547 354 : hrAlaGlyLysMetMetAspLeuSerLeuGlnSerPheThr : 366 || ||||||... ...|||||||||:!!||||||||| hrPheGlyLysPheSerSerLeuSerLeuGluSerPheThr 1402548 : cttttggaaaattttcaagtctCTCCTTGGAAAGCTTTACG : 1402588 vulgar: CbirOr142CTE 315 366 . KQ414716.1 1402435 1402588 + 131 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1402436 1402588 131 + . gene_id 6 ; sequence CbirOr142CTE ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1402436 1402588 . + . KQ414716.1 exonerate:protein2genome:local exon 1402436 1402588 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1402436 1402588 131 + . alignment_id 6 ; Query CbirOr142CTE ; Align 1402436 316 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr142CTE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 0 -> 84 Target range: 1385619 -> 1385868 1 : MetLeuArgLysSerThrLeuAsnArgThrIleLysPheLeuLeuIleLeuPheGl : 19 ||| ! !! !!!!! !:!!|||||| !!:!::!!!:! !||| !|||||||| MetThrSerThrThrIleIleAsnArgProLeuGluTyrSerLeuArgLeuPheGl 1385620 : ATGACTTCGACGACTATAATTAATCGTCCATTGGAATATAGCCTCCGTCTATTTGG : 1385674 20 : yIleTrpProGlyThrSerTyrIleLeuValCysArgGlyPheTrpIleIleThrI : 38 | !||||||! !:!!|||||| !!!!:!! !!! !.!!||| ! ! !! yAlaTrpProAspSerSerTyrSerPheLeuLysSerIleIleTrpSerThrIleM 1385675 : CGCCTGGCCAGATTCTTCCTATTCATTTCTGAAAAGTATTATTTGGTCGACGATAA : 1385731 39 : leGlyPheIleGluPheCysHisTyrArgTyrPheValThrHisIleTyrSerAla : 56 !:!.! ... ... ...||| !!|||! !:!!||||||||| |||... etAlaThrPheLeuMetPheGlnTyrTrpTyrCysIleThrHisIleArgSerGly 1385732 : TGGCAAcgtttttaatgtttcaataTTGGTATTGTATTACTCATATTAGATCAggt : 1385785 57 : GluLeuLeuAspLeuIleAspCysThrCysSerPheLeuAlaHisAlaLysValLe : 75 |||:::||||||:::||| ! ! !!! ! !|||:!!:!!:!! |||!! ---LeuIleAspLeuLeuAspGlyLeuSerIleThrLeuSerAsnSerLeuValPh 1385786 : ---ttaattgatttattgGACGGATTGAGTATTACTTTATCAAATTCACTCGTCTT : 1385839 76 : uIleLysPheIleValPheTrpLeuAsn : 84 !:!!|||!!.|||:!!.!!||||||:!! eLeuLysLeuIleIleIleTrpLeuHis 1385840 : TCTCAAATTGATTATTATTTGGCTTCAT : 1385868 vulgar: CbirOr142CTE 0 84 . KQ414716.1 1385619 1385868 + 122 M 56 168 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1385620 1385868 122 + . gene_id 7 ; sequence CbirOr142CTE ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1385620 1385868 . + . KQ414716.1 exonerate:protein2genome:local exon 1385620 1385868 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local similarity 1385620 1385868 122 + . alignment_id 7 ; Query CbirOr142CTE ; Align 1385620 1 168 ; Align 1385788 58 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr143 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 402 Query range: 200 -> 383 Target range: 1387110 -> 1387955 201 : IleLeuHisValGlyGlyGlnIleAspIleLeuGlnTyrArgLeuGluGlnLeuAl : 219 |||||||||||||||||||||||||||:!!||| ! !.!:!!..!.!.:!!:! IleLeuHisValGlyGlyGlnIleAspLeuLeuCysGlnAsnMetArgAspIleSe 1387111 : ATATTACATGTTGGTGGTCAGATCGATTTATTGTGTCAAAACATGAGAGACATTTC : 1387165 220 : aPheSerGluIleArgAsnGluGlnGluSerIleIleThrValAsnLysIleIleG : 238 ! !!:!.!. !:!!!.! !! !:!!!.! :!:|||:!!!!. ! :!!:!! rArgAsnHisGluLysLysValProGlnLys---LeuThrIleLysAspValValV 1387166 : TCGTAATCATGAGAAGAAAGTACCGCAAAAA---CTGACAATAAAGGATGTCGTTG : 1387219 239 : lnLysHisGlnLysIleIleTyrPheSerGluAsnIleGluSerLeuTyrThrTyr : 256 !:!||||||::!|||||| .!.|||:!!|||||||||!!!:!!!:!|||||| alArgHisGlnArgIleIleArgLeuSerLysAsnIleGluThrValPheThrTyr 1387220 : TTAGGCATCAACGAATTATACGACTGTCTAAAAATATCGAGACAGTTTTTACTTAT : 1387273 257 : IleAlaLeuLeuLeuPheValSerAsnIleAlaLeuIleCysSerIleGlyPheLe : 275 |||:!!|||! |||:::||||||::: !:!!||||||! !|||.!!|||:! IleSerLeuCysGlnPheLeuSerAsnMetLeuValIleCysPheIleSerPheVa 1387274 : ATATCATTATgccaatttttatcgaatatgcTGGTTATCTGTTTCATAAGCTTCGT : 1387330 276 : uIleValThr >>>> Target Intron 1 >>>> AlaIleGlySerProAs : 284 !:!:|||||| 85 bp :!!:!:..!!!! !.! lLeuValThr++ ++SerLeuAsnThrGluGl 1387331 : TTTGGTAACCgt.........................agTCCTTGAACACGGAACA : 1387442 285 : pAlaThrGlnGlnIleIleLysCysIleLeuPhePheThrIleThrAsnLeuGluA : 303 ..!!||| ! !|||:!:||||||.!!! !!:!!:!..! !..!|||! !|||| nThrThrGlyLeuIleLeuLysCysPheProTyrTyrValAlaValAsnCysGluA 1387443 : GACAACTGGATTAATACTGAAATGTTTTCCCTATTACGTTGCTGTTAATTGTGAAG : 1387499 304 : laTyrIleTyrCysTyrAlaGlyGluTyrLeuAsnAsnLys >>>> Target I : 317 ||!:!|||! ||||||.!!||||||||||||!.!::!||| 79 laPheIleLeuCysTyrThrGlyGluTyrLeuThrSerLys++ 1387500 : CATTCATTTTATGTTATACCGGAGAATATCTAACCTCTAAGgt............. : 1387543 318 : ntron 2 >>>> SerLysGluIleGlyLeuAlaThrTyrAsnCysAlaTrpTyr : 330 bp |||:!!...||| !! !:!:...|||||| |||||| ++SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyr 1387544 : ............agagtgAACGTATTACACAATCtgtgtacaattttctttggTAC : 1387659 331 : AsnLeuLysProLysAspSerArgValLeuLeuPheIleIleLeuArgSerGlnLy : 349 :!!|||||||||::!!!::!!|||::::::|||...|||||||||||||||||||| AspLeuLysProArgGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLy 1387660 : GATCTAAAACCTCGAGAAGCTCgtattgtattattaataatattacgaTCTCAGAA : 1387716 350 : sGlnLeuThrLeuThrAlaGlyLysMetMetAspLeuSerLeuGlnSerPheAlaS : 368 |:!!|||! !|||||||||||||||.!.:!!:!!||||||||| :!!||||||! sGluLeuIleLeuThrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaA 1387717 : AGAGTTAATACTCACTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTA : 1387773 369 : er >>>> Target Intron 3 >>>> IleMetAsnIleSerGlySerTyrL : 377 :: 135 bp ::::!:!!. !|||!.!||||||: sn++ ++MetLeuLysAlaSerAlaSerTyrV 1387774 : Atgt.........................agatgCTAAAAGCTTCAGCCTCGTACG : 1387935 378 : euSerValLeuLeuAlaMet : 383 !!|||||||||! !|||||| alSerValLeuHisAlaMet 1387936 : TATCTGTTTTGCATGCAATG : 1387955 vulgar: CbirOr143 200 383 . KQ414716.1 1387110 1387955 + 402 M 29 87 G 1 0 M 48 144 5 0 2 I 0 81 3 0 2 M 38 114 5 0 2 I 0 75 3 0 2 M 52 156 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387111 1387955 402 + . gene_id 1 ; sequence CbirOr143 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387111 1387341 . + . KQ414716.1 exonerate:protein2genome:local exon 1387111 1387341 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local splice5 1387342 1387343 . + . intron_id 1 ; splice_site "Gt" KQ414716.1 exonerate:protein2genome:local intron 1387342 1387426 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387425 1387426 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1387427 1387540 . + . KQ414716.1 exonerate:protein2genome:local exon 1387427 1387540 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387541 1387542 . + . intron_id 2 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387541 1387619 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1387618 1387619 . + . intron_id 1 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 3 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 2 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387111 1387955 402 + . alignment_id 1 ; Query CbirOr143 ; Align 1387111 201 87 ; Align 1387198 231 144 ; Align 1387427 279 114 ; Align 1387620 317 156 ; Align 1387911 369 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr143 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 323 Query range: 232 -> 383 Target range: 1401096 -> 1402805 233 : ValAsnLysIleIleGlnLysHisGlnLysIleIleTyrPheSerGluAsnIleGl : 251 :::... ...|||.!.!:!||||||:!!|||||| !|||:!!|||!..||||| IleLysPhePheIleAsnArgHisGlnGluIleIleValPheAlaGluArgIleGl 1401097 : ataaaattcttcattaACAGACATCAGGAAATTATTGTTTTTGCAGAAAGAATTGA : 1401151 252 : uSerLeuTyrThrTyrIleAlaLeuLeuLeuPheValSerAsnIleAlaLeuIleC : 270 |!.!|||!:!||||||!!:|||||| !! !.!!|||||||||! !:!!|||| uLysLeuPheThrTyrMetAlaLeuSerGlnLeuValSerAsnThrIleIleIleC 1401152 : GAAACTTTTTACATACATGGCTCTCAGTCAACTTGTGTCCAATACGATAATTATAT : 1401208 271 : ysSerIleGlyPheLeuIleValThr >>>> Target Intron 1 >>>> A : 279 ||!!!:!!|||||||||:!!|||! ! 83 bp | ysCysValGlyPheLeuValValIle++ ++A 1401209 : GTTGCGTAGGATTTCTCGTTGTAATTgt.........................agg : 1401318 280 : laIleGlySerProAspAlaThrGlnGlnIleIleLysCysIleLeuPhePheThr : 297 ||:!! !! ! !:!!!.!..!! ! !:!!:!!||| :::||||||:::... laValHisIleAspAsnGlyValProLeuLeuLeuLysSerLeuLeuPheTyrVal 1401319 : CAGTACATATCGACAATGGAGTTCCTCTGTTACTCAaatctcttttattttatgtg : 1401372 298 : IleThrAsnLeuGluAlaTyrIleTyrCysTyrAlaGlyGluTyrLeuAsnAsnLy : 316 :!!! ! !|||||||||!:!|||||||||!:!!.!||||||||||||!:!! !|| ValIleCysLeuGluAlaPheIleTyrCysPheValGlyGluTyrLeuSerIleLy 1401373 : GTTATTTGTTTAGAAGCGTTTATATACTGCTTTGTCGGAGAATATCTCAGTATCAA : 1401429 317 : s >>>> Target Intron 2 >>>> SerLysGluIleGlyLeuAlaThrTy : 325 | 1004 bp |||:!! !|||||| !.!!.!!|| s++ ++SerGlnLeuIleGlyAsnThrAlaTy 1401430 : Ggt.........................agAGCCAACTAATCGGCAATACGGCGTA : 1402460 326 : rAsnCysAlaTrpTyrAsnLeuLysProLysAspSerArgValLeuLeuPheIleI : 344 |.!.! ! !||||||:!!|||::: !!! !!:|||!:!:!!|||:!! !:!!| rGluPheLeuTrpTyrAspLeuArgSerThrGluSerGlnLeuLeuIleProValI 1402461 : TGAATTTCTTTGGTACGATTTACGTTCAACTGAAAGCCAACTTCTAATACCTGTAA : 1402517 345 : leLeuArgSerGlnLysGlnLeuThrLeuThrAlaGlyLysMetMetAspLeuSer : 362 ||||||||||||||||| !!!|||!..||| ||||||... ...|||||| leLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysPheSerSerLeuSer 1402518 : TATTGAGGTCTCAAAAGGGTTTCACGTttacttttggaaaattttcaagtctCTCC : 1402571 363 : LeuGlnSerPheAlaSer >>>> Target Intron 3 >>>> IleMetAsn : 371 |||:!!||||||.!!:!! 169 bp ||||||!!. LeuGluSerPheThrAla++ ++IleMetLys 1402572 : TTGGAAAGCTTTACGGCCgt.........................agATCATGAAA : 1402767 372 : IleSerGlySerTyrLeuSerValLeuLeuAlaMet : 383 :!!|||!.!||||||:!!|||||||||||||||:!! ValSerAlaSerTyrIleSerValLeuLeuAlaVal 1402768 : GTCTCAGCATCATATATATCAGTACTTCTTGCAGTG : 1402805 vulgar: CbirOr143 232 383 . KQ414716.1 1401096 1402805 + 323 M 46 138 5 0 2 I 0 79 3 0 2 M 38 114 5 0 2 I 0 1000 3 0 2 M 52 156 5 0 2 I 0 165 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401097 1402805 323 + . gene_id 2 ; sequence CbirOr143 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1401097 1401234 . + . KQ414716.1 exonerate:protein2genome:local exon 1401097 1401234 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401235 1401236 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401235 1401317 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1401316 1401317 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1401318 1401431 . + . KQ414716.1 exonerate:protein2genome:local exon 1401318 1401431 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1401432 1401433 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1401432 1402435 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1402434 1402435 . + . intron_id 1 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402436 1402591 . + . KQ414716.1 exonerate:protein2genome:local exon 1402436 1402591 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1402592 1402593 . + . intron_id 3 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1402592 1402760 . + . intron_id 3 KQ414716.1 exonerate:protein2genome:local splice3 1402759 1402760 . + . intron_id 2 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402761 1402805 . + . KQ414716.1 exonerate:protein2genome:local exon 1402761 1402805 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401097 1402805 323 + . alignment_id 2 ; Query CbirOr143 ; Align 1401097 233 138 ; Align 1401318 279 114 ; Align 1402436 317 156 ; Align 1402761 369 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr143 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 179 Query range: 200 -> 316 Target range: 1394161 -> 1394970 201 : IleLeuHisValGlyGlyGlnIleAspIleLeuGlnTyrArgLeuGluGlnLeuAl : 219 |||!!!|||:!!||||||||||||!!:!!:|||||| ! !||| ...::::: IlePheHisIleGlyGlyGlnIleGluMetLeuGlnLysAlaLeuThrAsnIleSe 1394162 : ATATTTCATATTGGAGGACAGATAGAAATGTTGCAGAAAGCTCtgacaaatatttc : 1394216 220 : aPheSerGluIleArgAsnGluGlnGluSerIleIleThrValAsnLysIleIleG : 238 :......:!: ..!!!..!.::! !|||! !! !|||..!!!...!:!!|||! rIleLysAsp---GluLysHisArgLeuSerArgAsnThrThrLysSerLeuIleH 1394217 : tattaaagAT---GAGAAACACAGATTATCGAGAAACACCACCAAATCATTAATTC : 1394270 239 : lnLysHisGlnLysIleIleTyrPheSerGluAsnIleGluSerLeuTyrThrTyr : 256 !.!:!|||!!.::!|||||| ! !|||!!:::!||||||||||||!:!:!!||| isArgHisHisArgIleIleIleAsnSerAspSerIleGluSerLeuPheSerTyr 1394271 : ACAGACATCATCGAATCATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATAC : 1394324 257 : IleAlaLeuLeuLeuPheValSerAsnIleAlaLeuIleCysSerIleGly{Ph} : 274 |||||||||:!!! !!:::!!!!!|||! !:!!||||||!!!||||||{||} IleAlaLeuMetGlnTrpLeuCysAsnThrLeuValIleCysCysIleGly{Ph}- 1394325 : ATTGCTTTGATGCAGTGGTTATGTAACACGCTCGTTATATGTTGCATAGGA{TT}c : 1394380 275 : >>>> Target Intron 1 >>>> {e}LeuIleValThrAlaIleGlySerP : 283 464 bp {|}|||:::::: !|||.!!..!!!! + +-{e}LeuLeuLeu***AlaPheAsnThrA 1394381 : t.........................at{t}ttattgttgtaGGCATTTAATACAG : 1394869 284 : roAspAlaThrGlnGlnIleIleLysCysIleLeuPhePheThrIleThrAsnLeu : 301 ::: ...|||||| ::!||||||!:!! ! !! !!.!:!! spGlyAsnIleLysThrPheIleLysThrLeuLeuPheTyrIleAlaIleThrMet 1394870 : atggaaatataaaaacatttataaaaacattACTCTTTTACATCGCTATCACTATG : 1394923 302 : GluAlaTyrIleTyrCysTyrAlaGlyGluTyrLeuAsnAsnLys : 316 ||||||!:!|||!:!! !!:!|||||||||||||||!:!|||||| GluAlaPheIlePheSerPheAlaGlyGluTyrLeuSerAsnLys 1394924 : GAAGCATTCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAA : 1394970 vulgar: CbirOr143 200 316 . KQ414716.1 1394161 1394970 + 179 M 22 66 G 1 0 M 50 150 S 0 2 5 0 2 I 0 460 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394162 1394970 179 + . gene_id 3 ; sequence CbirOr143 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394162 1394379 . + . KQ414716.1 exonerate:protein2genome:local exon 1394162 1394379 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local splice5 1394380 1394381 . + . intron_id 1 ; splice_site "CT" KQ414716.1 exonerate:protein2genome:local intron 1394380 1394843 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1394842 1394843 . + . intron_id 0 ; splice_site "at" KQ414716.1 exonerate:protein2genome:local cds 1394844 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394844 1394970 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394162 1394970 179 + . alignment_id 3 ; Query CbirOr143 ; Align 1394162 201 66 ; Align 1394228 224 150 ; Align 1394845 275 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr143 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 316 -> 369 Target range: 1395323 -> 1395482 317 : SerLysGluIleGlyLeuAlaThrTyrAsnCysAlaTrpTyrAsnLeuLysProLy : 335 ||| !..!|||.!! !|||.!!|||!:!! !!|||||| !||| ! |||:! SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 336 : sAspSerArgValLeuLeuPheIleIleLeuArgSerGlnLysGlnLeuThrLeuT : 354 !|||!!!!.!:!!:!!:!!.!!:!!!!::!!|||||||||!:!!:!||||||:!!| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 355 : hrAlaGlyLysMetMetAspLeuSerLeuGlnSerPheAlaSerIle : 369 |||||||||||.!.|||||||||||||||:!!.!!||||||!:!:!! hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnVal 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTA : 1395482 vulgar: CbirOr143 316 369 . KQ414716.1 1395323 1395482 + 143 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395482 143 + . gene_id 4 ; sequence CbirOr143 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395482 143 + . alignment_id 4 ; Query CbirOr143 ; Align 1395324 317 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr143 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 312 -> 369 Target range: 1409037 -> 1409208 313 : LeuAsnAsnLysSerLysGluIleGlyLeuAlaThrTyrAsnCysAlaTrpTyrAs : 331 :!!:!! !:::|||||| |||||| !.!!.!!|||.!.! ! !|||||||| IleAspPheGlnSerLysLeuIleGlyAspThrAlaTyrGluPheLeuTrpTyrAs 1409038 : ATTGATTTTcagagtaaactgattggagACACGGCGTATGAATTTCTTTGGTATAA : 1409092 332 : nLeuLysProLysAspSerArgValLeuLeuPheIleIleLeuArgSerGlnLysG : 350 |:!! ! !!|||!!:||||||:!!:!!|||.!!:!!|||||||||||||||||| nMetHisSerLysGluSerArgLeuMetLeuLeuValIleLeuArgSerGlnLysG 1409093 : TATGCATTCGAAGGAAAGCCGACTTATGTTGCTTGTAATACTACGATCACAGAAAG : 1409149 351 : lnLeuThrLeuThrAlaGlyLysMetMetAspLeuSerLeuGlnSerPheAlaSer : 368 !!!!|||...||| ||||||... ...||||||:!!:!!|||||||||.!! lyPheThrPheThrPheGlyLysPheAlaSerLeuSerMetGluSerPheAlaGly 1409150 : GATTTACtttcacttttggaaaatttgcaagtCTTTCCATGGAAAGTTTTGCAGGC : 1409203 369 : Ile : 369 :!! Val 1409204 : GTA : 1409208 vulgar: CbirOr143 312 369 . KQ414716.1 1409037 1409208 + 139 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1409038 1409208 139 + . gene_id 5 ; sequence CbirOr143 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1409038 1409208 . + . KQ414716.1 exonerate:protein2genome:local exon 1409038 1409208 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1409038 1409208 139 + . alignment_id 5 ; Query CbirOr143 ; Align 1409038 313 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr148 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 317 -> 385 Target range: 1345564 -> 1345846 318 : SerAlaAlaLeuArgAspAlaPheTyrAsnThrGluTrpTyrAsnAsnProProSe : 336 |||:!!! !:!!!:!.!.|||! !||| !!:!.!.||||||:!! ||| !!. SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 337 : rCysThrLysLeuIleSerIleCysMetValArgAlaGluLysProMetValLeuT : 355 !! !|||::!! !:!!! !.!!|||!!:!.!|||:!!:!!|||||| ! !|||| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 356 : hrAlaAlaLysPhePheProLeuSerLeuSerThrPheThrAsn >>>> Targe : 370 |||||!.!||||||!:! !!!!||||||..!|||||| !! ! hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIle++ 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCgt.......... : 1345723 371 : t Intron 1 >>>> IleValLysThrSerMetAlaTyrLeuSerIleLeuArg : 382 78 bp |||||||||.!!||||||||||||||||||:!!|||!:! ++IleValLysAlaSerMetAlaTyrLeuSerValLeuLys 1345724 : ...............agATAGTAAAAGCGTCGATGGCCTATCTTTCCGTTCTGAAA : 1345835 383 : AsnPheIle : 385 !:!.!!||| SerIleIle 1345836 : AGCATTATC : 1345846 vulgar: CbirOr148 317 385 . KQ414782.1 1345564 1345846 + 151 M 52 156 5 0 2 I 0 74 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345846 151 + . gene_id 1 ; sequence CbirOr148 ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345565 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345846 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345846 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345846 151 + . alignment_id 1 ; Query CbirOr148 ; Align 1345565 318 156 ; Align 1345799 370 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr150 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 718 Query range: 133 -> 389 Target range: 1344588 -> 1345843 134 : LeuPhePheValProAlaLeuTyrTyrLeuAlaProIlePheAlaCysIleLeuSe : 152 ...|||||| ||| !:! !::! !|||||| ! !|||! !!: PhePhePheGlnSerAsnLeuValPheArgSerAspIlePheIleAsnIleSerAs 1344589 : tttttttttcaatcaaacCTCGTATTTAGAAGCGACATTTTTATCAACATTTCCAA : 1344643 153 : rAsnGluTyrGlySerGlyAsnCysThrLeuProTyrGluLeuProValArgValA : 171 ! ... ! !! !.!!|||||||||||||||||||||||||||:!!!:!|||| n***SerThrGluPheSerAsnCysThrLeuProTyrGluLeuProMetLysValA 1344644 : TTGATCCACAGAGTTCAGTAACTGTACTCTTCCTTACGAGCTACCAATGAAAGTGA : 1344700 172 : snLeuValTyrGluIleSerGlyMetArgSerTyrValLeuPheCysValIleLeu : 189 ||! !:!!||||||:!:!!!! !:!!|||!!!|||!.!|||||||||||| !!!! snHisLeuTyrGluValThrGluValArgThrTyrAlaLeuPheCysValTyrPhe 1344701 : ACCACCTGTACGAAGTGACAGAGGTGCGGACGTACGCTTTGTTCTGCGTTTACTTC : 1344754 190 : IleProSerSerThrPheLeuThrIleGlyAlaThrAlaAlaAspSerAlaMetIl : 208 :!!|||!!!|||! !!!.||||||||||||||||||!.!||||||||| !:!::! ValProThrSerMetLeuLeuThrIleGlyAlaThrGlyAlaAspSerLeuLeuVa 1344755 : GTACCGACGAGCATGTTACTAACAATCGGTGCAACTGGCGCCGACAGTCTTCTAGT : 1344811 209 : eSerLeuThrPheTyrLeuCysGlyGlnLeuSerIleLeuAspHisArgMetLysA : 227 !!!!|||||||||:!!||||||.!!|||!!!|||||||||... |||:::|||| lThrLeuThrPheHisLeuCysSerGlnPheSerIleLeuSerSerArgValLysA 1344812 : CACCTTGACTTTCCATCTTTGCAGTCAATTTTCGATcctgtcgagccgtgtaaaaA : 1344868 228 : snIleAspLeuLysSerSerLysCysHisTyrGluMetLysValLeuValLysArg : 245 ||||||||:!!:!! !!..!|||! ! ! :!!||||||!.!||||||:!!||| snIleAspValGluProGlnLysTyrPheProGlnMetLysAlaLeuValGluArg 1344869 : ATATCGACGTCGAGCCGCAAAAGTATTTCCCACAAATGAAAGCACTCGTTGAACGG : 1344922 246 : HisMetGluLeuIle{Gl} >>>> Target Intron 1 >>>> {n}LeuAl : 253 |||! ||||||:!!{!:} 139 bp {!}||||| HisThrGluLeuLeu{Ar}++ ++{g}LeuAl 1344923 : CACACCGAACTTCTA{CG}gt.........................ag{A}TTGGC : 1345085 254 : aAsnIleLeuAlaAspThrPheSerTrpLeuMetPheValGlnThrValGlyIleI : 272 |..!|||||||||!!:||||||||| |||||||||:!!||||||:!!|||:::| aGlyIleLeuAlaGluThrPheSerThrLeuMetPheIleGlnThrLeuGlyLeuI 1345086 : GGGCATTTTGGCAGAGACGTTTAGTACTCTGATGTTTATACAAACTTTAGGgttga : 1345142 273 : lePheSerLeuCysIleIleLeuTyrGlnLeuLeuMet >>>> Target Intr : 285 |||||||||||||||||:!!:!!!:!|||||||||! ! 133 bp lePheSerLeuCysIleValValPheGlnLeuLeuThr++ 1345143 : tattttctttatgCATCGTCGTCTTTCAATTACTCACGgt................ : 1345183 286 : on 2 >>>> ThrAlaGluGlyGluLysGluIleAspGluIleIleHisPheMet : 299 ! !::!|||..!! :!!!!:!!::!! ! |||||||||!!: ++MetSerGluSerGlyGluAspMetAsn---ThrIleHisPheIle 1345184 : .........agATGAGCGAATCGGGCGAAGACATGAAC---ACGATACACTTTATA : 1345353 300 : MetTyrSerIleAlaValValLeuLeuAlaPheCysTyrCysPheLeuGlyGluCy : 318 !!:|||||| !||||||:!!||||||||||||||||||||||||||||||||||| IleTyrSerCysAlaValIleLeuLeuAlaPheCysTyrCysPheLeuGlyGluCy 1345354 : ATTTATTCCTGCGCCGTTATATTACTAGCATTCTGCTATTGTTTCTTGGGAGAGTG : 1345410 319 : sLeuIleSerGlu >>>> Target Intron 3 >>>> SerLeuAlaLeuGl : 327 |||||||!:!||| 140 bp |||! !! !:!!:! sLeuIleAsnGlu++ ++SerSerGluMetGl 1345411 : CCTGATTAACGAGgt.........................agAGTTCTGAAATGCA : 1345577 328 : uTrpAlaCysTyrSerIleAsnTrpTyrGluSerSerSerGluPheValHisLeuL : 346 ! !|||||||||! !! !|||||||||!!:! ! !!..!:!!!:!..!!..! !| nGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLysTyrThrArgSerL 1345578 : GCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAAATACACGCGATCGT : 1345634 347 : euMetIleCysIleAlaArgSerArgLysProLeuCysLeuThrAlaGlyLysPhe : 364 ||!!:.!!|||||||||||||||!:!||||||! !! !|||||||||||||||||| euIlePheCysIleAlaArgSerGlnLysProSerTyrLeuThrAlaGlyLysPhe 1345635 : TAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAGCTGGCAAGTTC : 1345688 365 : TyrValPheSerLeuGluThrPheGlyThr >>>> Target Intron 4 >>> : 375 |||||||||||||||||||||||||||! ! 78 bp TyrValPheSerLeuGluThrPheGlyIle++ 1345689 : TACGTGTTCTCGTTAGAAACATTCGGCATCgt........................ : 1345723 376 : > IleIleLysAlaSerMetAlaTyrLeuSerValLeuLysThrIle : 389 |||:!!|||||||||||||||||||||||||||||||||!:!||| ++IleValLysAlaSerMetAlaTyrLeuSerValLeuLysSerIle 1345724 : .agATAGTAAAAGCGTCGATGGCCTATCTTTCCGTTCTGAAAAGCATT : 1345843 vulgar: CbirOr150 133 389 . KQ414782.1 1344588 1345843 + 718 M 117 351 S 0 2 5 0 2 I 0 135 3 0 2 S 1 1 M 33 99 5 0 2 I 0 129 3 0 2 M 9 27 G 1 0 M 28 84 5 0 2 I 0 136 3 0 2 M 52 156 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1344589 1345843 718 + . gene_id 1 ; sequence CbirOr150 ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1344589 1344941 . + . KQ414782.1 exonerate:protein2genome:local exon 1344589 1344941 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1344942 1344943 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1344942 1345080 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345079 1345080 . + . intron_id 0 ; splice_site "AG" KQ414782.1 exonerate:protein2genome:local cds 1345081 1345180 . + . KQ414782.1 exonerate:protein2genome:local exon 1345081 1345180 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345181 1345182 . + . intron_id 2 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345181 1345313 . + . intron_id 2 KQ414782.1 exonerate:protein2genome:local splice3 1345312 1345313 . + . intron_id 1 ; splice_site "AG" KQ414782.1 exonerate:protein2genome:local cds 1345314 1345424 . + . KQ414782.1 exonerate:protein2genome:local exon 1345314 1345424 . + . insertions 0 ; deletions 1 KQ414782.1 exonerate:protein2genome:local splice5 1345425 1345426 . + . intron_id 3 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345425 1345564 . + . intron_id 3 KQ414782.1 exonerate:protein2genome:local splice3 1345563 1345564 . + . intron_id 2 ; splice_site "AG" KQ414782.1 exonerate:protein2genome:local cds 1345565 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 4 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 4 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 3 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345843 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345843 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1344589 1345843 718 + . alignment_id 1 ; Query CbirOr150 ; Align 1344589 134 351 ; Align 1345082 252 99 ; Align 1345314 285 27 ; Align 1345341 295 84 ; Align 1345565 323 156 ; Align 1345799 375 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr150 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 454 Query range: 0 -> 155 Target range: 1342073 -> 1342538 1 : MetArgLeuArgIleGluSerPheTyrAspLysGlnValIleSerTrpSerLysLe : 19 :!: !|||!.!:!:||| !|||||||||:!!.!.|||:!!||||||||||||! ValSerLeuAsnValGluLeuPheTyrAspGluAsnValLeuSerTrpSerLysAr 1342074 : GTATCGTTGAACGTGGAACTGTTCTACGACGAGAACGTGCTATCGTGGAGCAAACG : 1342128 20 : uLeuLeuSerIleIleGlyLeuTrpProGluAsnHisAsnAspPheArgPhePheP : 38 !||||||.!!:!! !||||||||||||!!:|||!.!|||||| |||||||||| gLeuLeuGlyLeuSerGlyLeuTrpProAspAsnArgAsnAspValArgPhePheP 1342129 : TCTCCTCGGCTTATCCGGCCTGTGGCCGGATAATCGCAACGAcgtacgatttttct : 1342185 39 : heTyrIleThrTyrIleIleSerCysSerLeuLeuLeuIleValAsnLeuValGln : 56 ||||||||!:!|||:!::!:! !! !!!!! !||| !!!:|||!..|||:!!||| heTyrIleSerTyrValValIlePheThrTrpLeuGluMetValThrLeuLeuGln 1342186 : tctacATTAGCTACGTGGTGATCTTCACGTGGCTGGAGATGGTGACGCTGCTGCAG : 1342239 57 : AsnMetHisAspMetLysLysValMetArgTyrIleThrPheValPheProSerIl : 75 |||!!:||||||:!::!!||| :::::: ||||||.!. !||||||!!!|| AsnIleHisAspLeuGluLysSerLeuLysAsnIleThrLeuSerPheProThrIl 1342240 : AATATACACGACCTTGAGaagtcgttgaaaaatatcacgCTATCGTTCCCGACCAT : 1342296 76 : eLeuIleValLeuLysAsnValMetPheArgTrpLysLysAspGlnLeuLeuProI : 94 |||||||||||||||| !|||||||||||| !!!.! ! !!! :!!||||||: eLeuIleValLeuLysAlaValMetPheArgLeuAsnMetHisLeuValLeuProL 1342297 : CTTGATAGTGCTGAAGGCCGTGATGTTTCGGCTGAACATGCATCTCGTCCTGCCGT : 1342353 95 : leLeuAlaValIleLysGlyAsnValLysGluGlyLeuTyrGlnThrTyrAspGlu : 112 !:|||! !!.!:!:!:! !:!!||||||:!!|||||||||!:!:!! ! !!:||| euLeuGluAlaValArgLysAspValLysGlnGlyLeuTyrArgSerGlnGluGlu 1342354 : TGCTCGAGGCAGTGAGAAAGGACGTGAAACAGGGACTGTATCGGTCGCAGGAGGAA : 1342407 113 : LysTyrLysValIleTrpTyrAsnIleAlaSerThrLeuPheThrThrSerSerVa : 131 !:! ! !|||:!!||||||!:!:!:|||:!!|||||||||:!!|||||||||!. ArgArgThrValValTrpTyrSerValAlaAlaThrLeuPheSerThrSerSerAl 1342408 : AGGCGAACGGTTGTATGGTACAGCGTGGCCGCCACCTTATTTTCCACGTCGTCGGC : 1342464 132 : lThrSerLeuPhePheValProAlaLeuTyrTyrLeuAlaProIlePheAlaCysI : 150 !! !||||||||||||||||||.!!|||!:!||| ! !|||||| !!!.!|||: aMetSerLeuPhePheValProThrLeuPheTyrThrLysProIleValGlyCysL 1342465 : CATGTCTTTGTTCTTCGTGCCCACGTTATTTTATACGAAGCCGATCGTCGGCTGTC : 1342521 151 : leLeuSerAsnGluTyr : 155 !:||||||!:!:!!!:! euLeuSerSerLysPhe 1342522 : TGTTGTCGAGTAAGTTC : 1342538 vulgar: CbirOr150 0 155 . KQ414782.1 1342073 1342538 + 454 M 155 465 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1342074 1342538 454 + . gene_id 2 ; sequence CbirOr150 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1342074 1342538 . + . KQ414782.1 exonerate:protein2genome:local exon 1342074 1342538 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1342074 1342538 454 + . alignment_id 2 ; Query CbirOr150 ; Align 1342074 1 465 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr151 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 326 -> 379 Target range: 1345564 -> 1345723 327 : SerSerThrIleSerArgThrLeuTyrThrIleAspTrpTyrGluLeuProValLe : 345 |||||| !!!:..!!:!.!!! !||| !! !:!!||||||!!:||||||! ! SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 346 : uPheLysIleGluValCysLeuLeuMetLeuArgSerGlnLysSerSerLysIleT : 364 !!:!! ! !..!:!! !!!! !!!: !|||||||||||| !!||| ! :!!| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 365 : hrAlaGlyLysPheTyrValMetHisLeuGluAsnPheAsnAlaVal : 379 ||||||||||||||||||||.!. ||||||!..|||..! !||| hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIleVal 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCGTG : 1345723 vulgar: CbirOr151 326 379 . KQ414782.1 1345564 1345723 + 112 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345723 112 + . gene_id 1 ; sequence CbirOr151 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345723 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345723 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345723 112 + . alignment_id 1 ; Query CbirOr151 ; Align 1345565 327 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr149NTE Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 308 -> 376 Target range: 1345564 -> 1345846 309 : SerSerGlyLeuGlnAspAlaPheTyrAsnIleLysTrpTyrLysAsnProProGl : 327 ||||||! !:!!|||.!.|||! !||| !! !!!.|||||| ! ||| !:! SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 328 : nHisThrArgLeuIleSerIleCysMetThrArgAlaGluLysProLeuThrLeuT : 346 !:!!||||||! !:!!! !.!!|||!!:.!!|||:!!:!!||||||! ! !|||| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 347 : hrAlaGlyLysPheCysIleLeuSerLeuSerThrPheThrAsn >>>> Targe : 361 ||||||||||||||! !:!:!!!||||||..!|||||| !! ! hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIle++ 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCgt.......... : 1345723 362 : t Intron 1 >>>> IleValLysThrSerMetAlaTyrMetSerLeuLeuArg : 373 78 bp |||||||||.!!||||||||||||:!:|||:!!|||!:! ++IleValLysAlaSerMetAlaTyrLeuSerValLeuLys 1345724 : ...............agATAGTAAAAGCGTCGATGGCCTATCTTTCCGTTCTGAAA : 1345835 374 : LysIleLeu : 376 !..|||:!! SerIleIle 1345836 : AGCATTATC : 1345846 vulgar: CbirOr149NTE 308 376 . KQ414782.1 1345564 1345846 + 161 M 52 156 5 0 2 I 0 74 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345846 161 + . gene_id 1 ; sequence CbirOr149NTE ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345565 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345846 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345846 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345846 161 + . alignment_id 1 ; Query CbirOr149NTE ; Align 1345565 309 156 ; Align 1345799 361 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr149NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 261 -> 361 Target range: 33789 -> 34543 262 : LeuCysLeuThrSerLeuAsnMetLeuAlaAsnSerGluPheGlyAspAsnThrAsnPhe : 281 :!!! |||! !!!!! ! !!:|||! !|||..!:!! ! !|||..!.!.!!. MetSerLeuIleThrGlnValIleLeuGluAsnGluLysGlyIlePheAsnValGlnLeu 33790 : ATGTCGTTAATTACACAGGTGATACTAGAAAACGAGAAAGGAATATTCAACGTGCAATTG : 33847 282 : IleValPheLeuLeuTyrThrSerCysValPheMetThrIlePheGlyTyrCysTyrIle : 301 :!! !!|||:!!|||!:!..!!!!! !:!!.!!:!: !|||!:! !|||||||||||| LeuPhePheValLeuPheValCysPheIleLeuValHisIleTyrIleTyrCysTyrIle 33848 : CTTTTCTTCGTGCTGTTCGTATGCTTCATCCTTGTACACATCTACATTTATTGTTACATA : 33907 302 : GlyAspCysLeuIleThrGlu >>>> Target Intron 1 >>>> SerSerGlyL : 312 |||!!: |||:!!|||.!. 454 bp |||!!!! !: GlyGluMetLeuLeuThrHis+- ++SerArgGluM 33908 : GGAGAGATGCTACTCACACATgc.........................agAGCAGAGAAA : 34394 313 : euGlnAspAlaPheTyrAsnIleLysTrpTyrLysAsnProProGlnHisThrArgLeuI : 332 !!...:!!:!! !|||.!. !!!.||||||!!. ! !!|||! !.!..!!!:!! !: etSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProProGluAlaLysCysL 34395 : TGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCAGAAGCCAAGTGCC : 34454 333 : leSerIleCysMetThrArgAlaGluLysProLeuThrLeuThrAlaGlyLysPheCysI : 352 !!! !.!! !||| !|||.!!! :::|||||| !|||||||||||||||||| !!! euLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAlaGlyLysPheSerT 34455 : TTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCAGGAAAATTCAGTA : 34514 353 : leLeuSerLeuSerThrPheThrAsnIle : 361 !!!!|||:!!..!! !|||!:!!.!:!! hrPheSerMetGluMetPheSerThrVal 34515 : CCTTCTCCATGGAAATGTTCAGTACTGTA : 34543 vulgar: CbirOr149NTE 261 361 . KQ414804.1 33789 34543 + 137 M 47 141 5 0 2 I 0 450 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33790 34543 137 + . gene_id 1 ; sequence CbirOr149NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33790 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33790 33930 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 1 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34543 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34543 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33790 34543 137 + . alignment_id 1 ; Query CbirOr149NTE ; Align 33790 262 141 ; Align 34385 309 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr148 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 277 -> 370 Target range: 33810 -> 34543 278 : MetIleThrAsnSerGluHisGlyAspAsnAlaSerValValAlaPheIleLeuTyrThr : 297 !!::!! !|||..!:!! ! !|||!.!..!:!!:!! !|||:!:|||!:!..! IleLeuGluAsnGluLysGlyIlePheAsnValGlnLeuLeuPhePheValLeuPheVal 33811 : ATACTAGAAAACGAGAAAGGAATATTCAACGTGCAATTGCTTTTCTTCGTGCTGTTCGTA : 33868 298 : PheCysValSerMetThrIlePheGlyTyrCysTyrIleGlyAspCysPheIleAsnGlu : 317 ! !! !:!! !:!: !|||!:! !|||||||||||||||!!: .!.:!!!...!. CysPheIleLeuValHisIleTyrIleTyrCysTyrIleGlyGluMetLeuLeuThrHis 33869 : TGCTTCATCCTTGTACACATCTACATTTATTGTTACATAGGAGAGATGCTACTCACACAT : 33928 318 : >>>> Target Intron 1 >>>> SerAlaAlaLeuArgAspAlaPheTyrAsnT : 328 454 bp ||| !! !:!!!!!:!!:!! !|||.!.: +- ++SerArgGluMetSerAsnSerAlaTyrGluS 33929 : gc.........................agAGCAGAGAAATGAGCAATTCCGCTTACGAGT : 34415 329 : hrGluTrpTyrAsnAsnProProSerCysThrLysLeuIleSerIleCysMetValArgA : 348 !!.!.||||||||| ! !!||| !! .!!|||! !:!!! !.!! !||| !|||. erAsnTrpTyrAsnValSerProProGluAlaLysCysLeuLeuPheIleMetHisArgT 34416 : CAAACTGGTACAACGTCTCACCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAA : 34475 349 : laGluLysProMetValLeuThrAlaAlaLysPhePheProLeuSerLeuSerThrPheT : 368 !!! :::|||:!: !|||||||||!.!|||||| ! !!!!!|||:!!..!! !|||! hrAlaArgProLeuCysLeuThrAlaGlyLysPheSerThrPheSerMetGluMetPheS 34476 : CCGCTCGTCCACTTTGCTTGACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCA : 34535 369 : hrAsnIle : 370 :!!.!:!! erThrVal 34536 : GTACTGTA : 34543 vulgar: CbirOr148 277 370 . KQ414804.1 33810 34543 + 123 M 40 120 5 0 2 I 0 450 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33811 34543 123 + . gene_id 1 ; sequence CbirOr148 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33811 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33811 33930 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 1 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34543 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34543 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33811 34543 123 + . alignment_id 1 ; Query CbirOr148 ; Align 33811 278 120 ; Align 34385 318 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr150 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 317 -> 390 Target range: 34369 -> 34671 318 : CysLeuIleSerGluSerLeuAlaLeuGluTrpAlaCysTyrSerIleAsnTrpTyrGlu : 337 ||| !|||! !:!!||| !! !:!!... :!!..!|||..! !|||||||||.!. CysGlyIlePheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsn 34370 : tGTGGTATATTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAAC : 34427 338 : SerSerSerGluPheValHisLeuLeuMetIleCysIleAlaArgSerArgLysProLeu : 357 !||| !! ! !.! ! ! !|||:!:.!! !!!: !|||!!! !:::|||||| ValSerProProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeu 34428 : GTCTCACCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTT : 34487 358 : CysLeuThrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyThr >>>> Ta : 375 ||||||||||||||||||||| !..!||||||:!!|||! !|||.!!||| CysLeuThrAlaGlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34488 : TGCTTGACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt....... : 34543 376 : rget Intron 1 >>>> IleIleLysAlaSerMetAlaTyrLeuSerValLeuLysT : 388 83 bp |||:!:|||.!!:!!|||!.!||||||||||||||| | ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeuT 34544 : ..................agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTCA : 34663 389 : hrIleThr : 390 ||:!!||| hrValThr 34664 : CAGTTACA : 34671 vulgar: CbirOr150 317 390 . KQ414804.1 34369 34671 + 155 M 57 171 5 0 2 I 0 79 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34370 34671 155 + . gene_id 1 ; sequence CbirOr150 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34370 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34370 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34671 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34671 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34370 34671 155 + . alignment_id 1 ; Query CbirOr150 ; Align 34370 318 171 ; Align 34624 375 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr139 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 300 -> 384 Target range: 51840 -> 52349 301 : AsnPheGluAlaPheValTyrCysPheAlaGlyGluTyrLeuSerSerLysSerLysMet : 320 ||| !!.!..!!|||:!! !!! ::::::...::: ::!||| AsnValAsnThrPheIleAlaSerCysHis***LysPhePheThrPheGlnSerValGlu 51841 : AATGTTAATACTTTTATTGCAAGTTgtcattaaaaattcttcacttttcaGAGCGTTGAA : 51898 321 : IleGlyGluAlaAlaTyrAspSerSerTrpTyrGlnSerThrProGlnAspSerArgIle : 340 |||!.!.!.|||||||||||||||..!||||||.!.! !:!!|||:!!:!!:!!!:!:!: IleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLysAsnAlaLysLeu 51899 : ATAGCTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTG : 51958 341 : IleLeuPheLeuIleMetArgSerGlnAsnGlnLeuThrIleThrIleGlyLysPheMet : 360 :!!|||.!!:!!!!: |||:!!::! ! ||| !|||||| !|||!:!||| LeuLeuIleIleMetArgArgAlaArgLeuProLeuGlnIleThrAlaGlyArgPheAla 51959 : CTACTAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCAGGTAGATTTGCT : 52018 361 : AspLeuSerLeuGluArgPheAlaAsn >>>> Target Intron 1 >>>> IleI : 371 !!!!!!!||| !! !!:!:!!.!. 251 bp |||: ThrPheThrLeuMetLeuTyrSerGln++ ++IleL 52019 : ACTTTCACTCTGATGCTGTATTCACAGgt.........................agATTT : 52302 372 : leLysAlaSerAla<-><->SerTyrValSerValLeuLeuAlaMet : 384 !!|||.!!|||!.! .!!|||||||||||||||! !|||||| euLysThrSerValGlyLysGlyTyrValSerValLeuTyrAlaMet 52303 : TAAAAACCTCGGTGGGAAAAGGTTATGTTTCTGTTCTATACGCAATG : 52349 vulgar: CbirOr139 300 384 . KQ414804.1 51840 52349 + 123 M 69 207 5 0 2 I 0 247 3 0 2 M 6 18 G 0 6 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51841 52349 123 + . gene_id 1 ; sequence CbirOr139 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51841 52047 . + . KQ414804.1 exonerate:protein2genome:local exon 51841 52047 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 52048 52049 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 52048 52298 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 52297 52298 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 52299 52349 . + . KQ414804.1 exonerate:protein2genome:local exon 52299 52349 . + . insertions 6 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51841 52349 123 + . alignment_id 1 ; Query CbirOr139 ; Align 51841 301 207 ; Align 52299 370 18 ; Align 52323 376 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr145 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 295 -> 365 Target range: 51840 -> 52050 296 : AsnLeuGluAlaPheIlePheCysPheAlaGlyGluTyrLeuSerMetLysSerLysMet : 315 |||:!!.!..!!|||||| !!! ::::::...:::...::!||| AsnValAsnThrPheIleAlaSerCysHis***LysPhePheThrPheGlnSerValGlu 51841 : AATGTTAATACTTTTATTGCAAGTTgtcattaaaaattcttcacttttcaGAGCGTTGAA : 51898 316 : IleGlyAspAlaAlaTyrGluSerLeuTrpTyrAspLeuThrProSerGluThrArgIle : 335 |||!.!:!!|||||||||!!:||| !||||||:!!|||:!!|||!.!.!..!!!:!:!: IleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLysAsnAlaLysLeu 51899 : ATAGCTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTG : 51958 336 : LeuLeuPheLeuIleMetArgSerGlnLysGlnLeuThrIleThrValGlyArgPheThr : 355 ||||||.!!:!!!!: |||:!!::! !! ||| !||||||!.!|||||||||.!! LeuLeuIleIleMetArgArgAlaArgLeuProLeuGlnIleThrAlaGlyArgPheAla 51959 : CTACTAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCAGGTAGATTTGCT : 52018 356 : AsnLeuSerLeuGlnGlnPheAlaAsnIle : 365 !.!!!!!!!|||..!! !!:!:!!.!.:!: ThrPheThrLeuMetLeuTyrSerGlnVal 52019 : ACTTTCACTCTGATGCTGTATTCACAGGTa : 52050 vulgar: CbirOr145 295 365 . KQ414804.1 51840 52050 + 123 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51841 52050 123 + . gene_id 1 ; sequence CbirOr145 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 51841 52050 . + . KQ414804.1 exonerate:protein2genome:local exon 51841 52050 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51841 52050 123 + . alignment_id 1 ; Query CbirOr145 ; Align 51841 296 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr151 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 326 -> 379 Target range: 39965 -> 40124 327 : SerSerThrIleSerArgThrLeuTyrThrIleAspTrpTyrGluLeuProValLeuPhe : 346 |||!!! !|||.!!!:!:!! !||| ! !:!!||||||!!:|||||| ! ! ! SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 347 : LysIleGluValCysLeuLeuMetLeuArgSerGlnLysSerSerLysIleThrAlaGly : 366 :!!..!:!! !:!!:!!!!:! !|||:!!||| !|||! !:!!|||||||||||| AlaValSerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGly 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGA : 40083 367 : LysPheTyrValMetHisLeuGluAsnPheAsnAlaVal : 379 |||||| ! !.!. !|||||| |||||||||||| LysPheSerProPheSerLeuGluLeuPheAsnAlaVal 40084 : AAATTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTGTG : 40124 vulgar: CbirOr151 326 379 . KQ414804.1 39965 40124 + 108 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40124 108 + . gene_id 1 ; sequence CbirOr151 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39966 40124 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40124 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39966 40124 108 + . alignment_id 1 ; Query CbirOr151 ; Align 39966 327 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr153 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 223 Query range: 300 -> 410 Target range: 12463 -> 13155 301 : PheLeuGlyArgGlyThrLeuIleArgArgThrIleTyrMetSerHisAlaAsnAlaCys : 320 ||| !.!!.! !:!!||| !||||||!:!|||!:!|||! !! ! ! !!.!..! Phe***AlaAsnThrSerLeuAlaArgArgSerIlePheMetPheLeuIleCysGlyAla 12464 : ttttagGCTAATACTTCTCTTGCAAGGCGCAGTATTTTCATGTTCCTCATATGTGGCGCC : 12521 321 : ValCysGlnLeuPheValValThrPheThrSerAsnAspLeuIleGluGluSerArgAla : 340 :!! ! !||||||:!! !!|||!:!!:!!!!||| :!!||||||:!!||| ! ! MetValLeuLeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsn 12522 : ATGGTTTTATTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAAT : 12581 341 : IleGlyHisAlaAlaTyrAsnAlaAsnTrpGlnValLeu<->SerHisLysHisAspLys : 359 |||!.! !|||||||||:::||| ||| !! !:!! ! !:!!||| !! !||| IleAlaPheAlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLys 12582 : ATTGCTTTTGCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAA : 12641 360 : ArgIleArgAsnAlaIleGlnMetIleMetValArgSerIleArgAlaCysSerIleSer : 379 !:!:!!|||:!!! !:!: !|||:!!!!:! !||||||! !|||!.!|||!!!:!:!!! LysLeuArgHisAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThr 12642 : AAGCTACGGCATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACT : 12701 380 : AlaGlyGlyPhePheProValSerLeuGluThrPheMetThr >>>> Target Intr : 394 |||..!|||||||||||||||||||||||||||!:!! ||| 359 bp AlaAsnGlyPhePheProValSerLeuGluThrTyrThrThr++ 12702 : GCGAATGGATTTTTCCCTGTGTCCTTAGAAACTTATACTACGgt................ : 12748 395 : on 1 >>>> ValMetGlyThrAlaAlaSerTyrPheThrLeuLeuArgAsnPheIleG : 410 ::::::.!!||||||||||||||||||||||||||||||||| !:!!: ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnValG 12749 : .........agattttgAGTACCGCGGCGTCGTACTTCACATTATTGAGAAATAACGTAG : 13153 411 : ln : 410 !! lu 13154 : AA : 13155 vulgar: CbirOr153 300 410 . KQ414828.1 12463 13155 + 223 M 53 159 G 0 3 M 40 120 5 0 2 I 0 355 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 12464 13155 223 + . gene_id 1 ; sequence CbirOr153 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 12464 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12464 12745 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13104 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 13103 13104 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 13105 13155 . + . KQ414828.1 exonerate:protein2genome:local exon 13105 13155 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 12464 13155 223 + . alignment_id 1 ; Query CbirOr153 ; Align 12464 301 159 ; Align 12626 354 120 ; Align 13105 394 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr153 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 191 Query range: 272 -> 407 Target range: 4081 -> 5250 273 : LysMetGluSerIlePheMetTyrThrThrLeuCysGlnLeuMetValSerGlyIleLeuLe : 293 ...:::...||||||||||||! ! !!.!:!!||| !|||:!: !! ! !! !! !:! AsnIleArgSerIlePheMetSerArgAsnValCysLeuLeuLeuPheHisArgCys***Va 4082 : aatattcgttcgatttttatgTCTCGTAATGTTTGTTTACTACTATTTCACCGCTGTTGAGT : 4142 294 : uCysValAlaGlyPheGlnValPheLeuGlyArgGlyThrLeuIleArgArgThrIleTyrM : 314 ! !..!:!! !.!. !!:!! ! !! ! ! ! !!:!!!!:!:!||| !! !!:!: lIleThrSerMetIle***LeuProGlnGluAspThrProIleMetGlnArgLeuThrPheL 4143 : AATTACATCTATGATATAATTACCACAGGAAGATACTCCCATTATGCAGCGCCTTACTTTCT : 4205 315 : etSerHisAlaAsnAlaCysValCysGlnLeuPheValValThrPheThrSerAsnAspLeu : 334 !!! !||| !!..!.!|||:!!|||||||||!!.:!! !!|||!:!!:!!!!:!! !||| euPheHisLeuThrGlyCysLeuCysGlnLeuLeuMetPheThrTyrSerCysAspCysLeu 4206 : TGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTG : 4265 335 : IleGluGluSerArgAlaIleGlyHisAlaAlaTyrAsnAlaAsnTrp<->GlnValLeuSe : 354 |||..!|||||| ! !:!:!.!:!!||| !|||:!!..!:::||| !!.:!!! !! IleArgGluSerLeuAsnValAlaAsnAlaIleTyrAspCysSerTrpIleHisLeuProMe 4266 : ATACGAGAAAGCTTGAACGTGGCCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAAT : 4328 355 : rHisLysHisAspLysArgIleArgAsnAlaIleGlnMetIleMetValArgSerIleArgA : 375 ! !!!:! !! ::!! !:!:|||!!.! !:!: !.!.:!!!!:! !||||||! ! ! tAspArgSerGlyArgMetLeuArgLysAspLeuThrPheValIleGlyArgSerArgValP 4329 : GGACAGATCTGGGCGAATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTAC : 4391 376 : laCysSerIleSerAlaGlyGlyPhePheProValSerLeuGluThrPheMetThr >>>> : 394 !!|||!!!:!!!!!||| !!|||||||||||||||||||||||||||!:!! :!! roCysCysLeuThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 4392 : CTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt.... : 4450 395 : Target Intron 1 >>>> ValMetGlyThrAlaAlaSerTyrPheThrLeuLeuArg : 406 761 bp :!!:!:.!!|||||||||||||||||||||||||||||| ++IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArg 4451 : .....................agATTTTAAGTACCGCAGCGTCATACTTCACACTGCTACGA : 5245 407 : Asn : 407 ||| Asn 5246 : AAC : 5250 vulgar: CbirOr153 272 407 . KQ414828.1 4081 5250 + 191 M 78 234 G 0 3 M 43 129 5 0 2 I 0 757 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 4082 5250 191 + . gene_id 2 ; sequence CbirOr153 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 4082 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4082 4447 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 5208 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 5207 5208 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 5209 5250 . + . KQ414828.1 exonerate:protein2genome:local exon 5209 5250 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 4082 5250 191 + . alignment_id 2 ; Query CbirOr153 ; Align 4082 273 234 ; Align 4319 351 129 ; Align 5209 394 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr153 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 309 -> 406 Target range: 19377 -> 19894 310 : ArgThrIleTyrMetSerHisAlaAsnAlaCysValCysGlnLeuPheValValThrPhe : 329 ||| !|||!:!!!:! !||| !...||||||:!!|||||||||.!.:!! !!|||!:! ArgLeuIlePheIlePheHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyr 19378 : CGACTGATTTTCATCTTTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTAC : 19435 330 : ThrSerAsnAspLeuIleGluGluSerArgAlaIleGlyHisAlaAlaTyrAsnAlaAsn : 349 !:!!!!:!! !:!!|||..!||||||! !::!! !!.!.!.|||!.!|||!:!!.! ! SerCysAspCysIleIleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyPro 19436 : AGCTGCGACTGCATCATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCC : 19495 350 : TrpGlnValLeuSerHisLysHisAsp<->LysArgIleArgAsnAlaIleGlnMetIle : 368 ||| !:!!||| !! !.. ||| |||! !||||||!!.! !:!:..!:!::!! TrpThrLeuLeuProMetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuVal 19496 : TGGACACTTTTACCAATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTT : 19555 369 : MetValArgSerIleArgAlaCysSerIleSerAlaGlyGlyPhePheProValSerLeu : 388 !!::!!||||||! ! ! !!|||!!!:!:!!!||| !!||||||||| !||||||||| IleMetArgSerSerValProCysCysLeuThrAlaArgGlyPhePheValValSerLeu 19556 : ATCATGAGATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTA : 19615 389 : GluThrPheMet{T} >>>> Target Intron 1 >>>> {hr}ValMetGlyThr : 397 ||||||!:!! { } 223 bp { !}|||:!:.!!||| GluThrTyrThr{G}+- +-{lu}ValLeuSerThr 19616 : GAAACGTACACA{G}gg.........................ac{AG}GTTTTAAGCACC : 19865 398 : AlaAlaSerTyrPheThrLeuLeuArg : 406 ||||||||||||||||||||||||!:! AlaAlaSerTyrPheThrLeuLeuLys 19866 : GCAGCCTCATACTTTACGTTGCTGAAG : 19894 vulgar: CbirOr153 309 406 . KQ414828.1 19377 19894 + 166 M 49 147 G 0 3 M 34 102 S 0 1 5 0 2 I 0 219 3 0 2 S 1 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 19378 19894 166 + . gene_id 3 ; sequence CbirOr153 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 19378 19630 . + . KQ414828.1 exonerate:protein2genome:local exon 19378 19630 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19631 19632 . + . intron_id 1 ; splice_site "GG" KQ414828.1 exonerate:protein2genome:local intron 19631 19853 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 19852 19853 . + . intron_id 0 ; splice_site "AC" KQ414828.1 exonerate:protein2genome:local cds 19854 19894 . + . KQ414828.1 exonerate:protein2genome:local exon 19854 19894 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 19378 19894 166 + . alignment_id 3 ; Query CbirOr153 ; Align 19378 310 147 ; Align 19528 359 102 ; Align 19856 394 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr153 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 320 -> 410 Target range: 28559 -> 29242 321 : ValCysGlnLeuPheValValThrPheThrSerAsnAspLeuIleGluGluSerArgAla : 340 ||| !!||||||!:::!! !!|||!:!!:!!!!:!! !:!!! ! !||||||! ! ! ValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsn 28560 : GTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAAC : 28617 341 : IleGlyHisAlaAlaTyrAsnAlaAsnTrp<->GlnValLeuSerHisLysHisAspLys : 359 |||!.!.!.:!!!.!||| !!.! ||| .!.:!!! !! ||| ||| IleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLys 28618 : ATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaa : 28677 360 : ArgIleArgAsnAlaIleGlnMetIleMetValArgSerIleArgAlaCysSerIleSer : 379 :!!|||!!.! !:!!|||:!!:!!!!::!!|||:!!! !||| !!! !|||:!:!!! LeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThr 28678 : ctgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACT : 28737 380 : AlaGlyGlyPhePheProValSerLeuGluThrPheMetThr >>>> Target Intr : 394 ||| !!||||||||| !!:!!|||||||||||||||! ! ! 410 bp AlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 28738 : GCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt................ : 28784 395 : on 1 >>>> ValMetGlyThrAlaAlaSerTyrPheThrLeuLeuArgAsnPheIleG : 410 :!!|||.!!|||:!! !||||||||||||||||||!:!.!.! !|||: ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnCysIleG 28785 : .........agATCATGAGTACATCAATGTCGTATTTCACATTATTAAAACAATGTATCG : 29240 411 : ln : 410 !! lu 29241 : AG : 29242 vulgar: CbirOr153 320 410 . KQ414828.1 28559 29242 + 138 M 30 90 G 0 3 M 43 129 5 0 2 I 0 406 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28560 29242 138 + . gene_id 4 ; sequence CbirOr153 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 28560 28781 . + . KQ414828.1 exonerate:protein2genome:local exon 28560 28781 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 28782 28783 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 28782 29191 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 29190 29191 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 29192 29242 . + . KQ414828.1 exonerate:protein2genome:local exon 29192 29242 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28560 29242 138 + . alignment_id 4 ; Query CbirOr153 ; Align 28560 321 90 ; Align 28653 351 129 ; Align 29192 394 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr153 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 320 -> 410 Target range: 23604 -> 24190 321 : ValCysGlnLeuPheValValThrPheThrSerAsnAspLeuIleGluGluSerArgAla : 340 :!! !!||||||!:::!! !!|||!:!!:!!!!:!! !:!!! ! !||||||! ! ! MetSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsn 23605 : ATGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCATAACAACAGAAAGCCTGAAC : 23662 341 : IleGlyHisAlaAlaTyrAsnAlaAsnTrp<->GlnValLeuSerHisLysHisAspLys : 359 |||!.!.!.:!!!.!||| !!.! ||| .!.:!!! !! ! !!||| !! ||| IleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLys 23663 : ATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATGGACAAATTTGGAAAA : 23722 360 : ArgIleArgAsnAlaIleGlnMetIleMetValArgSerIleArgAlaCysSerIleSer : 379 ! !:!!|||!!.! !:!:||||||:!!!!::!!|||:!!! !||| !!! !:!!:!:!!! LeuLeuArgLysGluLeuGlnMetLeuIleLeuArgAlaArgArgProSerAlaLeuThr 23723 : CTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACT : 23782 380 : AlaGlyGlyPhePheProValSerLeuGluThrPheMetThr >>>> Target Intr : 394 ||| !!||||||||| !!:!!|||||||||||||||! ! ! 313 bp AlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 23783 : GCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt................ : 23829 395 : on 1 >>>> ValMetGlyThrAlaAlaSerTyrPheThrLeuLeuArgAsnPheIleG : 410 :!!|||.!!|||:!! !||||||||||||||||||!:!.!.! !|||: ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnCysIleG 23830 : .........agATCATGAGTACATCAATGTCGTATTTCACATTATTAAAACAATGTATCG : 24188 411 : ln : 410 !! lu 24189 : AG : 24190 vulgar: CbirOr153 320 410 . KQ414828.1 23604 24190 + 136 M 30 90 G 0 3 M 43 129 5 0 2 I 0 309 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 23605 24190 136 + . gene_id 5 ; sequence CbirOr153 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 23605 23826 . + . KQ414828.1 exonerate:protein2genome:local exon 23605 23826 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23827 23828 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23827 24139 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 24138 24139 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 24140 24190 . + . KQ414828.1 exonerate:protein2genome:local exon 24140 24190 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 23605 24190 136 + . alignment_id 5 ; Query CbirOr153 ; Align 23605 321 90 ; Align 23698 351 129 ; Align 24140 394 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr153 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 320 -> 409 Target range: 38535 -> 39211 321 : ValCysGlnLeuPheValValThrPheThrSerAsnAspLeuIleGluGluSerArgAla : 340 ||| !!||||||!:::!! !!|||!:!!:!!!!:!! !:!!! ! !||||||! ! ! ValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsn 38536 : GTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAAC : 38593 341 : IleGlyHisAlaAlaTyrAsnAlaAsnTrp<->GlnValLeuSerHisLysHisAspLys : 359 |||!.!.!.:!!!.!||| !!.! ||| .!.:!!! !! ||| ||| IleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLys 38594 : ATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaa : 38653 360 : ArgIleArgAsnAlaIleGlnMetIleMetValArgSerIleArgAlaCysSerIleSer : 379 :!!|||!!.! !:!!|||:!!:!!!!::!!|||:!!! !||| !!! !|||:!:!!! LeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThr 38654 : ctgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACT : 38713 380 : AlaGlyGlyPhePheProValSerLeuGluThrPheMetThr >>>> Target Intr : 394 ||| !!||||||||| !!:!!|||||||||||||||! ! ! 406 bp AlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 38714 : GCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt................ : 38760 395 : on 1 >>>> ValMetGlyThrAlaAlaSerTyrPheThrLeuLeuArgAsnPheIle : 409 :!!|||.!!|||:!! !||||||||||||||||||!:!.!. !||| ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnSerIle 38761 : .........agATCATGAGTACATCAATGTCGTATTTCACATTATTAAAACAAAGTATC : 39211 vulgar: CbirOr153 320 409 . KQ414828.1 38535 39211 + 136 M 30 90 G 0 3 M 43 129 5 0 2 I 0 402 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38536 39211 136 + . gene_id 6 ; sequence CbirOr153 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 38536 38757 . + . KQ414828.1 exonerate:protein2genome:local exon 38536 38757 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 38758 38759 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 38758 39163 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 39162 39163 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 39164 39211 . + . KQ414828.1 exonerate:protein2genome:local exon 39164 39211 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38536 39211 136 + . alignment_id 6 ; Query CbirOr153 ; Align 38536 321 90 ; Align 38629 351 129 ; Align 39164 394 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr153 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 159 -> 195 Target range: 17827 -> 17935 160 : AsnValGlyLysAsnValSerAspArgLysLeuProPheAsnValTrpIleGlyValPro : 179 |||:::||||||||| |||!!:|||! !||||||||||||:!!|||:!!..!:!!||| AsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpValAsnLeuPro 17828 : aatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTCAACTTGCCA : 17885 180 : ThrAsnValSerProAsnPheGluIleIlePhePheIleGluValLeu : 195 !::::!!!!!||| !!!:!|||||| ||| ::::!!|||||| LeuSerMetThrProTyrTyrGluIleThrPheSerLeuGlnValLeu 17886 : TTATCAATGACGCCATATTACgaaataactttttcattaCAGGTAttg : 17935 vulgar: CbirOr153 159 195 . KQ414828.1 17827 17935 + 112 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17828 17935 112 + . gene_id 7 ; sequence CbirOr153 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 17828 17935 . + . KQ414828.1 exonerate:protein2genome:local exon 17828 17935 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17828 17935 112 + . alignment_id 7 ; Query CbirOr153 ; Align 17828 160 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr153 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 320 -> 394 Target range: 33597 -> 33822 321 : ValCysGlnLeuPheValValThrPheThrSerAsnAspLeuIleGluGluSerArgAla : 340 ||| !!||||||!:::!! !!|||!:!!:!!!!||| !:!!! ! !||||||! ! ! ValSerGlnLeuTrpMetPheThrTyrSerCysAsnCysIleThrThrGluSerLeuAsn 33598 : GTGAGTCAACTATGGATGTTCACGTACAGTTGCAATTGCATAACAACAGAAAGCCTGAAC : 33655 341 : IleGlyHisAlaAlaTyrAsnAlaAsnTrp<->GlnValLeuSerHisLysHisAspLys : 359 |||!.!.!.:!!!.!||| !!.! ||| .!.:!!! !! ||| ||| IleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLys 33656 : ATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaa : 33715 360 : ArgIleArgAsnAlaIleGlnMetIleMetValArgSerIleArgAlaCysSerIleSer : 379 :!!|||!!.! !:!!|||:!!:!!!!::!!|||:!!! !||| !!! !:!!:!:!!! LeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerAlaLeuThr 33716 : ctgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACT : 33775 380 : AlaGlyGlyPhePheProValSerLeuGluThrPheMetThrVal : 394 ||| !!||||||||| !!:!!!!!||||||||||||! ! !||| AlaCysGlyPhePheSerIleThrLeuGluThrPheThrLysVal 33776 : GCCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTACTAAGGta : 33822 vulgar: CbirOr153 320 394 . KQ414828.1 33597 33822 + 103 M 30 90 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 33598 33822 103 + . gene_id 8 ; sequence CbirOr153 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 33598 33822 . + . KQ414828.1 exonerate:protein2genome:local exon 33598 33822 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 33598 33822 103 + . alignment_id 8 ; Query CbirOr153 ; Align 33598 321 90 ; Align 33691 351 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr147PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 187 -> 229 Target range: 33005 -> 33131 188 : AsnCysIleArgArgHisGlnAspAlaIleAlaPheAlaAspAlaLeuGluSerValLeu : 207 |||||||||!:!!:!||||||! ||| |||...::: ||||||..!|||!!! AsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysGluIleLeuGluGluValPhe 33006 : AATTGCATTCAACAACATCAGGCACTaattgaattttgtgaaatactCGAAGAGGTATTC : 33063 208 : AsnLeuLeuAlaLeuGlyGlnPheValLeuSerIleGlyLeuValCysPheAlaGlyPhe : 227 !..:!!:!!!.!||||||||| ! :!!:!!! !! ! !:!!:!!||||||||||||!:! ThrValIleValLeuGlyGlnValLeuMetPheSerIleIleIleCysPheAlaGlyTyr 33064 : ACGGTAATCGTACTCGGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTAT : 33123 228 : GlnIle : 229 :!!:!! GluVal 33124 : GAAGTA : 33131 vulgar: CbirOr147PSE 187 229 . KQ414828.1 33005 33131 + 104 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 33006 33131 104 + . gene_id 1 ; sequence CbirOr147PSE ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 33006 33131 . + . KQ414828.1 exonerate:protein2genome:local exon 33006 33131 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 33006 33131 104 + . alignment_id 1 ; Query CbirOr147PSE ; Align 33006 188 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr151 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 169 -> 286 Target range: 22692 -> 23052 170 : PheProMetTyrGluIleValTyrPheSerGlnMetLeuAlaThrSerLeuCysGlyLeu : 189 .!!||| ::: ::: ..!!!!||| |||:!!..!! !! ! !.!! ! IleProGlyAsnLysAsnIleSerLeuThrGlnAlaLeuSerValTyrGlnValSerAla 22693 : ATTCCAGgtaataaaaacatttctctCACGCAGGCTTTATCTGTGTACCAAGTTAGCGCG : 22750 190 : IleIleLeuGlyThrAspThrLeuIleAlaThrAlaLeuPheHisThrCysGlyHisPhe : 209 ! !||| !! ||| :::... .!.|||..!..!|||!!.||| CysTyrLeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPhe 22751 : TGTTACCTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTT : 22810 210 : ArgValLeuGlnGlyLysIleGluHisIleAsnGlyGluIleGlyHisMetLeuGlnAla : 229 |||:!!|||||| !!:!|||! :!!:!::::||| !! !! ! :!! !...::! ArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSer 22811 : CGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGT : 22870 230 : HisAsnGluLeuAsn<-><-><->IleValArgLysIleLysLeuGlnIleIleSerThr : 246 .!.||| ! !!.. ! !..!||| ! ! :!!:!!.!!! !:! ! GluAsnProSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCys 22871 : GAAAATCCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGC : 22930 247 : IleLysHisHisTyrThrIleLeuTrpPheCysAspTyrMetGluThrIlePheSerPro : 266 |||:!!!!.||| ! .!!:!!:!! ||||||! :!:||| !:!!|||!!! ! IleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrVal 22931 : ATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTA : 22990 267 : MetLeuPheLeuGlnThrLeuAlaSerSerLeuIleIleCysLeuValGlyPheGlnIle : 286 !!::!!.!! !|||..!||| !||||||:!!:!!||||||!!!:!!|||!:!|||:!! IleValLeuGlyGlnValLeuMetSerSerIleLeuIleCysPheIleGlyTyrGlnVal 22991 : ATCGTACTCGGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTA : 23050 vulgar: CbirOr151 169 286 . KQ414828.1 22692 23052 + 101 M 65 195 G 0 9 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22693 23052 101 + . gene_id 1 ; sequence CbirOr151 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 22693 23052 . + . KQ414828.1 exonerate:protein2genome:local exon 22693 23052 . + . insertions 9 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22693 23052 101 + . alignment_id 1 ; Query CbirOr151 ; Align 22693 170 195 ; Align 22897 235 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr142CTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 318 -> 367 Target range: 301886 -> 302033 319 : IleGlyAlaAlaAlaTyrAsnSerLeuTrpTyrAsnLeuLysProLysAspSerArgV : 338 ||||||:!!|||:!!|||.!.! ! !|||||||||||| ! !!||| :!! !! IleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrA 301887 : ATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACG : 301944 339 : alLeuLeuPheMetIleLeuArgSerGlnLysGlnLeuThrLeuThrAlaGlyLysMe : 357 !|||:!!.!.:!:! !:!!! !|||||| ! ! !! !! !|||||||||||||||!! spLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGlyLysIl 301945 : ATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAAT : 302001 358 : tMetAspLeuSerLeuGlnSerPheThrThr : 367 :!!:||||||||||||.!.!!!|||!:!:!! eIleAspLeuSerLeuAsnThrPheSerSer 302002 : AATCGACTTATCCTTGAATACATTCAGCTCT : 302033 vulgar: CbirOr142CTE 318 367 . KQ414889.1 301886 302033 + 101 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301887 302033 101 + . gene_id 1 ; sequence CbirOr142CTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301887 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301887 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301887 302033 101 + . alignment_id 1 ; Query CbirOr142CTE ; Align 301887 319 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr141 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 319 -> 376 Target range: 280285 -> 280456 320 : IleGlyMetAlaAlaTyrAsnSerAlaTrpTyrGluLeuLysProLysHisSerArgP : 339 :!!|||:!!:!!.!!|||! ! !! !||||||...||| ! !||| ! :!!!:! ValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnG 280286 : GTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAG : 280343 340 : roLeuIlePheIleIleLeuArgAlaGlnLysGlnLeuThrIleThrValGlyLysIl : 358 !||||||.!.|||.!! ! !:!!.!.......:!!! !:!!|||!.!|||||||| lyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIl 280344 : GTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGAT : 280400 359 : eMetAspLeuSerLeuGluCysPheAlaSerIleMetLysAlaSerGlySerTyr : 376 |!!:||||||||||||... !!|||..!|||:!:! ! !!:! !|||||| eIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 280401 : CATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 280456 vulgar: CbirOr141 319 376 . KQ414889.1 280285 280456 + 101 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280286 280456 101 + . gene_id 1 ; sequence CbirOr141 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280286 280456 . + . KQ414889.1 exonerate:protein2genome:local exon 280286 280456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280286 280456 101 + . alignment_id 1 ; Query CbirOr141 ; Align 280286 320 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr141 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 319 -> 376 Target range: 287072 -> 287243 320 : IleGlyMetAlaAlaTyrAsnSerAlaTrpTyrGluLeuLysProLysHisSerArgP : 339 :!!|||:!!:!!.!!|||! ! !! !||||||...||| ! !||| :!!!:! ValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnG 287073 : GTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAG : 287130 340 : roLeuIlePheIleIleLeuArgAlaGlnLysGlnLeuThrIleThrValGlyLysIl : 358 !||||||.!.|||.!! ! !:!!.!.......:!!! !:!!|||!.!|||||||| lyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIl 287131 : GTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGAT : 287187 359 : eMetAspLeuSerLeuGluCysPheAlaSerIleMetLysAlaSerGlySerTyr : 376 |!!:||||||||||||... !!|||..!|||:!:! ! !!:! !|||||| eIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 287188 : CATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 287243 vulgar: CbirOr141 319 376 . KQ414889.1 287072 287243 + 101 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287073 287243 101 + . gene_id 2 ; sequence CbirOr141 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287073 287243 . + . KQ414889.1 exonerate:protein2genome:local exon 287073 287243 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287073 287243 101 + . alignment_id 2 ; Query CbirOr141 ; Align 287073 320 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr143 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 318 -> 376 Target range: 287069 -> 287243 319 : GluIleGlyLeuAlaThrTyrAsnCysAlaTrpTyrAsnLeuLysProLysAspSerA : 338 :!!:!!||||||:!!||||||! !! !||||||..!||| ! !||| :!!! LysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaG 287070 : AAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTC : 287127 339 : rgValLeuLeuPheIleIleLeuArgSerGlnLysGlnLeuThrLeuThrAlaGlyLy : 357 :!! !|||:!!.!.|||.!! ! !|||.!.......:!!! !|||||||||||||| lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 287128 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 287184 358 : sMetMetAspLeuSerLeuGlnSerPheAlaSerIleMetAsnIleSerGlySerTyr : 376 |!!:!!:||||||||||||...||||||..!|||:!:! ! !|||!:! !|||||| sIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 287185 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 287241 vulgar: CbirOr143 318 376 . KQ414889.1 287069 287243 + 124 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287070 287243 124 + . gene_id 1 ; sequence CbirOr143 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287070 287243 . + . KQ414889.1 exonerate:protein2genome:local exon 287070 287243 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287070 287243 124 + . alignment_id 1 ; Query CbirOr143 ; Align 287070 319 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr143 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 318 -> 376 Target range: 280282 -> 280456 319 : GluIleGlyLeuAlaThrTyrAsnCysAlaTrpTyrAsnLeuLysProLysAspSerA : 338 :!!:!!|||:!!:!!||||||! !! !||||||..!||| ! !||| ! :!!! LysValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaG 280283 : AAAGTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCAC : 280340 339 : rgValLeuLeuPheIleIleLeuArgSerGlnLysGlnLeuThrLeuThrAlaGlyLy : 357 :!! !|||:!!.!.|||.!! ! !|||.!.......:!!! !|||||||||||||| lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 280341 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 280397 358 : sMetMetAspLeuSerLeuGlnSerPheAlaSerIleMetAsnIleSerGlySerTyr : 376 |!!:!!:||||||||||||...||||||..!|||:!:! ! !|||!:! !|||||| sIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 280398 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 280454 vulgar: CbirOr143 318 376 . KQ414889.1 280282 280456 + 121 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280283 280456 121 + . gene_id 2 ; sequence CbirOr143 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280283 280456 . + . KQ414889.1 exonerate:protein2genome:local exon 280283 280456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280283 280456 121 + . alignment_id 2 ; Query CbirOr143 ; Align 280283 319 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr143 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 317 -> 369 Target range: 301880 -> 302036 318 : LysGluIleGlyLeuAlaThrTyrAsnCysAlaTrpTyrAsnLeuLysProLysAspS : 337 !..:!!||||||! !|||:!!|||.!. !! !|||||||||||| ! !!||| : SerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgA 301881 : AGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAG : 301938 338 : erArgValLeuLeuPheIleIleLeuArgSerGlnLysGlnLeuThrLeuThrAlaGl : 356 !! !! !|||:!!.!.:!!! !:!!! !|||||| ! ! !! !! !||||||||||| laTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGl 301939 : CATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGG : 301995 357 : yLysMetMetAspLeuSerLeuGlnSerPheAlaSerIle : 369 ||||!!:!!:||||||||||||.!.!!!|||::!|||:!! yLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301996 : GAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: CbirOr143 317 369 . KQ414889.1 301880 302036 + 109 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301881 302036 109 + . gene_id 3 ; sequence CbirOr143 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301881 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301881 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301881 302036 109 + . alignment_id 3 ; Query CbirOr143 ; Align 301881 318 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr153 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 345 Query range: 232 -> 406 Target range: 1682043 -> 1683051 233 : LeuGluArgValValCysThrAspIleValLysSerLeuAspGlnLysArgLysGl : 251 |||:!!!.! !:!! |||! :!: !:!!!.. ...:::::::::... LeuGlnAsnLysLeuGlnThrValLeuSerGluLysSerSerLysGluLysSerAl 1682044 : TTACAAAACAAACTCCAAACAGTATTGAGTGAGAAatcttcgaaagaaaaatcagc : 1682098 252 : nGluLeuTyrGluGluIleLysArgCysValIlePheHisHisGluLeuIleTrpT : 270 ! !||||||:!!|||.!!|||..!|||||| !:!|||||| !|||:!!! !| aGlyLeuTyrLysGluPheLysGluCysValGlnTyrHisHisLeuLeuLeuSerT 1682099 : tGGACTGTATAAAGAGTTCAAGGAGTGCGTACAGTATCATCATTTGCTTCTTTCGt : 1682155 271 : yrSerGluLysMetGluSerIlePheMetTyrThrThrLeuCysGlnLeuMetVal : 288 || ||||||:::||| :!!||| ! !! !:!! !||||||:!!||| yrValGluLysLeuGluTyrValPheCysValProLeuMetIleGlnLeuLeuVal 1682156 : acgtggaaaaattggaatacgTATTTTGTGTCCCGTTGATGATTCAATTGCTGGTG : 1682209 289 : SerGlyIleLeuLeuCysValAlaGlyPheGlnValPheLeu >>>> Target : 303 |||.!!|||:!!|||||||||:!!|||||||||:!!! ||| 28 SerSerIleValLeuCysValSerGlyPheGlnLeuSerLeu++ 1682210 : TCTAGCATAGTTCTGTGCGTCTCGGGGTTTCAACTATCATTGgt............ : 1682256 304 : Intron 1 >>>> GlyArgGlyThrLeuIleArgArgThrIleTyrMetSerHi : 316 5 bp ! !!.!|||..!|||!!:!:!||| !:!:!:!:!:!:!:! ++ValAsnGlyValLeuMetLysArgLeuLeuPheLeuAsnTy 1682257 : .............agGTGAACGGTGTATTGATGAAACGATTGTTGTTCCTAAATTA : 1682578 317 : sAlaAsnAlaCysValCysGlnLeuPheValValThrPheThrSerAsnAspLeuI : 335 ! ! !!.! ! ||| |||:::|||::::::|||.!.!.!!!!||||||:!!! rPheLeuGlyGlyValIleGlnIlePheLeuIleThrLeuAsnCysAsnAspIleM 1682579 : CTTTCTCGGTGGAGTGATacagatatttttaataacccTAAATTGCAACGACATAA : 1682635 336 : leGluGluSerArgAlaIleGlyHisAlaAlaTyrAsnAlaAsnTrpGlnValLeu : 353 !:|||:!!||| !!||||||||| ||| !|||!:!..!||||||:!! ! etGluGlnSerGlyAlaIleGlyThrAlaIleTyrSerCysAsnTrpGluArgAsn 1682636 : TGGAGCAAAGTGGCGCTATAGGAACAGCGATCTACAGTTGTAATTGGGAGAGGAAt : 1682689 354 : SerHisLysHisAspLysArgIleArgAsnAlaIleGlnMetIleMetValArgSe : 372 :::...||| ::!.!!|||!!.! !!!:..!!!::!!|||||||||:! ValTyrAsnHisPheTyrGlnPheArgLysAspMetMetIleValMetValArgAl 1682690 : gtttataatcatttttaccAGTTCAGAAAGGATATGATGATTGTAATGGTACGAGC : 1682746 373 : rIleArgAlaCysSerIleSerAlaGlyGlyPhePheProValSerLeuGluThrP : 391 !! !||| !!|||! !|||||||||!.! !|||||||||:!!|||||||||:!!| aLysArgProCysTyrIleSerAlaAlaLysPhePheProIleSerLeuGluSerP 1682747 : GAAACGTCCTTGCTACATTTCAGCAGCGAAATTCTTTCCAATCTCCCTTGAATCGT : 1682803 392 : heMetThr >>>> Target Intron 2 >>>> ValMetGlyThrAlaAlaS : 400 ||! !! 201 bp |||:!:.!!.!!.!!|||| heThrLys++ ++ValLeuSerAlaThrAlaS 1682804 : TCACGAaggt.........................agGTGTTAAGTGCAACAGCAT : 1683031 401 : erTyrPheThrLeuLeuArg : 406 |||||!:!|||||||||||| erTyrTyrThrLeuLeuArg 1683032 : CTTATTATACACTGCTGCGT : 1683051 vulgar: CbirOr153 232 406 . KQ414915.1 1682043 1683051 + 345 M 70 210 5 0 2 I 0 281 3 0 2 M 91 273 5 0 2 I 0 197 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682044 1683051 345 + . gene_id 1 ; sequence CbirOr153 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1682044 1682253 . + . KQ414915.1 exonerate:protein2genome:local exon 1682044 1682253 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1682254 1682255 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1682254 1682538 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1682537 1682538 . + . intron_id 0 ; splice_site "aG" KQ414915.1 exonerate:protein2genome:local cds 1682539 1682811 . + . KQ414915.1 exonerate:protein2genome:local exon 1682539 1682811 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1682812 1682813 . + . intron_id 2 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1682812 1683012 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1683011 1683012 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1683013 1683051 . + . KQ414915.1 exonerate:protein2genome:local exon 1683013 1683051 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1682044 1683051 345 + . alignment_id 1 ; Query CbirOr153 ; Align 1682044 233 210 ; Align 1682539 303 273 ; Align 1683013 394 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr153 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 239 Query range: 68 -> 194 Target range: 1698553 -> 1699139 69 : ThrTyrThrAlaCysSerAlaMetProValAlaValValLeuMetLysIleCysPh : 87 .!!||||||||||||!:! !:!: !:!! !:!!||||||:!:|||:!:! ! ! AlaTyrThrAlaCysAsnIleLeuCysLeuIleMetValLeuLeuLysLeuPheVa 1698554 : GCTTACACCGCTTGTAACATTCTCTGCCTGATTATGGTACTGTTAAAGCTGTTCGT : 1698608 88 : ePheLeuLysAsnArgLysGluIleLeuLysMetLeuArgTyrThrGluAspHisP : 106 ! ! !!!! !:!!|||||||||.!!:!!:!!:!:||| ||| :::| lValPheIleHisArgLysGluPheIleGluLeuLeuValTyrMetTyrLysAsnP 1698609 : TGTATTCATACACAGGAAAGAATTCATCGAACTgcttgtatatatgtacaaaaatt : 1698665 107 : heTrpTyrAlaGlnTyrAspGluTyrGlyAsnLysLeuLeuGluAspIleAsnLys : 124 |||||:!! !.!.|||||| !!! ! !||||||:!!||| !!..!:! heTrpHisLeuAsnTyrAspCysAsnGluLeuLeuLeuLeuGlnAspCysArgArg 1698666 : tttggcACCTCAATTACGATTGCAACGAACTACTACTGCTGCAAGACTGCAGAAGA : 1698719 125 : LysGlyIleIleLeuIleCysThrPheIlePhePheValGlnGlyAlaValValSe : 143 ! .!!! !|||! !||| !.!!! !|||! !!.!||||||.!!:!!||||| IleSerThrIleCysIleThrLeuIleAsnPheCysAlaGlnGlyThrIleValSe 1698720 : ATTAGCACTATATGTATCACGTTGATTAACTTCTGTGCTCAAGGCACAATTGTCAG : 1698776 144 : rTyrMetLeuAlaProIleIle{G} >>>> Target Intron 1 >>>> {l : 151 ||||:!!|||.!!|||||||||{|} 208 bp {| rTyrValLeuThrProIleIle{G}++ +-{l 1698777 : CTACGTGCTAACACCTATTATA{G}gt.........................ac{G : 1699009 152 : y}IleLeuIleLeuLysLeuHisGlnAsnValGlyLysAsnValSerAspArgLys : 169 |}! !:!:!!! ! :!! |||:::|||:::||| !||||||||| ! y}LysAspValPheTyrIleLeuAlaAsnIleGlyArgAsnSerSerAspArgVal 1699010 : G}AAGGATGTGTTCTATATTTTAgcaaatattggaagaaaCAGTTCCGATAGAGTG : 1699062 170 : LeuProPheAsnValTrpIleGlyValProThrAsnValSerProAsnPheGluIl : 188 ||||||||||||:!!|||:!!! !:!!||| !::!|||||||||!..!:!||||| LeuProPheAsnMetTrpValAspLeuProLeuSerValSerProThrTyrGluIl 1699063 : CTCCCATTCAACATGTGGGTTGATTTGCCGCTGTCTGTGTCACCAACGTACGAAAT : 1699119 189 : eIlePhePheIleGluVal : 194 |:!:||| ! :!!:!!||| eValPheValLeuGlnVal 1699120 : AGTGTTCGTGCTTCAGGTA : 1699139 vulgar: CbirOr153 68 194 . KQ414915.1 1698553 1699139 + 239 M 82 246 S 0 1 5 0 2 I 0 204 3 0 2 S 1 2 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1698554 1699139 239 + . gene_id 2 ; sequence CbirOr153 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1698554 1698800 . + . KQ414915.1 exonerate:protein2genome:local exon 1698554 1698800 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1698801 1698802 . + . intron_id 1 ; splice_site "Gt" KQ414915.1 exonerate:protein2genome:local intron 1698801 1699008 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699007 1699008 . + . intron_id 0 ; splice_site "AC" KQ414915.1 exonerate:protein2genome:local cds 1699009 1699139 . + . KQ414915.1 exonerate:protein2genome:local exon 1699009 1699139 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1698554 1699139 239 + . alignment_id 2 ; Query CbirOr153 ; Align 1698554 69 246 ; Align 1699011 152 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr153 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 193 Query range: 64 -> 153 Target range: 1681303 -> 1681570 65 : PheTyrAlaIleThrTyrThrAlaCysSerAlaMetProValAlaValValLeuMe : 83 ||| ||| |||||||||||||||!:!.!!!!:|||:!! !|||:!!||||| Phe***AlaAlaThrTyrThrAlaCysAsnThrIleProLeuPheValIleLeuMe 1681304 : ttttaggcAGCGACGTACACTGCTTGCAACACGATACCACTTTTCGTAATACTAAT : 1681358 84 : tLysIleCysPhePheLeuLysAsnArgLysGluIleLeuLysMetLeuArgTyrT : 102 ||||! ! ! ! ||| !! ...||||||||||||||| !:!!:!!..!!:!. tLysThrValValPheThrIleArgArgLysGluIleLeuTrpLeuIleGluPheA 1681359 : GAAGACTGTTGTATTCACGATTCGACGAAAAGAAATACTGTGGCTGATCGAATTTG : 1681415 103 : hrGluAspHisPheTrpTyrAlaGlnTyrAspGluTyrGlyAsnLysLeuLeuGlu : 120 !!:!! ! :!!||||||:!!! !:!!:!!..!...!:!|||!!.||| !:!!!!: laGlnLysTyrPheTrpHisAspLysHisSerSerPheGlyLysLysAlaMetAsp 1681416 : CCCAAAAATACTTTTGGCACGACAAGCACAGCAGCTTTGGAAAAAAGGCCATGGAC : 1681469 121 : AspIleAsnLysLysGlyIleIleLeuIleCysThrPheIlePhePheValGlnGl : 139 :!!:!!:!!|||!:!!.!:!!|||! !!!:! !:!!|||! !.!!.!.:!! ! !. AsnLeuAspLysArgAlaLeuIleTyrMetSerSerPheThrIleLeuIleTyrAl 1681470 : AACCTTGACAAGAGAGCCCTAATATATATGTCCTCTTTCACTATCCTAATTTATGC : 1681526 140 : yAlaValValSerTyrMetLeuAlaProIleIleGlyIleLeu : 153 !.!!||||||! !|||:!!|||:!!||||||:!!|||! ||| aThrValValIleTyrValLeuSerProIleLeuGlyLysLeu 1681527 : AACAGTCGTTATATACGTGTTGTCTCCAATTCTTGGTAAGTTG : 1681570 vulgar: CbirOr153 64 153 . KQ414915.1 1681303 1681570 + 193 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681304 1681570 193 + . gene_id 3 ; sequence CbirOr153 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1681304 1681570 . + . KQ414915.1 exonerate:protein2genome:local exon 1681304 1681570 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681304 1681570 193 + . alignment_id 3 ; Query CbirOr153 ; Align 1681304 65 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr153 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 187 Query range: 305 -> 407 Target range: 1702968 -> 1703650 306 : ThrLeuIleArgArgThrIleTyrMetSerHisAlaAsnAlaCysValCysGlnLe : 324 |||! ! |||||| !! !!:!:!:! !||| ! !!.! !!:!!|||||||| ThrProAlaArgArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLe 1702969 : ACTCCAGCGAGGCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACT : 1703023 325 : uPheValValThrPheThrSerAsnAspLeuIleGluGluSerArgAlaIleGlyH : 343 |!!.:!! !!|||!:!!:!!!!:!!! !|||||||||||||||! ! !|||||| uLeuLeuPheThrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyT 1703024 : ATTGCTATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGA : 1703080 344 : isAlaAlaTyrAsnAlaAsnTrp<->GlnValLeuSerHisLysHisAspLysArg : 360 !||| !||| !!.! !||| !!.:!!! !! ! !!||| !! !!:!||| hrAlaIleTyrLeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArg 1703081 : CTGCGATATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGG : 1703134 361 : IleArgAsnAlaIleGlnMetIleMetValArgSerIleArgAlaCysSerIleSe : 379 :!:|||!..! !:!: !|||:!!!!:|||||||||! !!:!:!! !!!!!:!!!! LeuArgArgAspLeuThrMetValIleValArgSerArgLysSerSerCysLeuTh 1703135 : TTGAGAAGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAAC : 1703191 380 : rAlaGlyGlyPhePheProValSerLeuGluThrPheMetThr >>>> Target : 394 !|||.!!|||||||||||||||||||||||||||! !! ||| 3 rAlaSerGlyPhePheProValSerLeuGluThrCysThrThr++ 1703192 : TGCCAGCGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGgt........... : 1703238 395 : Intron 1 >>>> ValMetGlyThrAlaAlaSerTyrPheThrLeuLeuArgA : 407 73 bp |||:!:.!!|||||| !|||||||||||||||||||||: ++ValLeuSerThrAlaMetSerTyrPheThrLeuLeuArgH 1703239 : ..............agGTGCTCAGTACAGCGATGTCATACTTCACTTTATTAAGGC : 1703648 408 : sn : 407 !! is 1703649 : AC : 1703650 vulgar: CbirOr153 305 407 . KQ414915.1 1702968 1703650 + 187 M 45 135 G 0 3 M 43 129 5 0 2 I 0 369 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702969 1703650 187 + . gene_id 4 ; sequence CbirOr153 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702969 1703235 . + . KQ414915.1 exonerate:protein2genome:local exon 1702969 1703235 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1703236 1703237 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1703236 1703608 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1703607 1703608 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1703609 1703650 . + . KQ414915.1 exonerate:protein2genome:local exon 1703609 1703650 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702969 1703650 187 + . alignment_id 4 ; Query CbirOr153 ; Align 1702969 306 135 ; Align 1703107 351 129 ; Align 1703609 394 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr153 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 320 -> 406 Target range: 1695671 -> 1696251 321 : ValCysGlnLeuPheValValThrPheThrSerAsnAspLeuIleGluGluSerAr : 339 :!!||||||||||||:!! !!|||!:!!:!!!!:!!! !|||! !..!||||||! LeuCysGlnLeuPheMetPheThrTyrSerCysAspGlyLeuThrArgGluSerMe 1695672 : TTGTGTCAACTTTTTATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCAT : 1695726 340 : gAlaIleGlyHisAlaAlaTyrAsnAlaAsnTrpGlnValLeu<->SerHisLysH : 357 !! !:!!.!!...|||!.!!:! ! ||| ! !||| ! ! !!!:!: tAspValSerArgAlaValPheAlaArgProTrpAlaAsnLeuProMetAspArgA 1695727 : GGACGTTAGCAGAGCTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAA : 1695783 358 : isAspLysArgIleArgAsnAlaIleGlnMetIleMetValArgSerIleArgAla : 375 !!! |||!!!:!:|||.!.::!!!:! !|||:!:!!::!!||||||! !|||..! snGlyLysSerValArgGlnSerMetLeuMetValIleMetArgSerAsnArgCys 1695784 : ATGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGT : 1695837 376 : CysSerIleSerAlaGlyGlyPhePheProValSerLeuGluThrPheMetThr : 394 |||!!!:!!!!!|||.!!|||||||||||||||||||||||||||!:!! ! CysCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrGly++ 1695838 : TGCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGgt : 1695894 395 : >>>> Target Intron 1 >>>> ValMetGlyThrAlaAlaSerTyrPheTh : 403 319 bp |||:!:.!!|||||| !||||||||||| ++ValLeuSerThrAlaMetSerTyrPheTh 1695895 : .........................agGTCCTCAGCACTGCAATGTCATACTTTAC : 1696240 404 : rLeuLeuArg : 406 |||||||||| rLeuLeuArg 1696241 : ACTACTGAGA : 1696251 vulgar: CbirOr153 320 406 . KQ414915.1 1695671 1696251 + 172 M 33 99 G 0 3 M 40 120 5 0 2 I 0 315 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1695672 1696251 172 + . gene_id 5 ; sequence CbirOr153 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1695672 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695672 1695893 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696251 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696251 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1695672 1696251 172 + . alignment_id 5 ; Query CbirOr153 ; Align 1695672 321 99 ; Align 1695774 354 120 ; Align 1696213 394 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr153 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 308 -> 410 Target range: 1712387 -> 1713330 309 : ArgArgThrIleTyrMetSerHisAlaAsnAlaCysValCysGlnLeuPheValVa : 327 !:!!:!! |||::: ||| ! !.!|||:!!|||||||||.!.:!! ! LysGlnMetIlePheThrPheHisLeuAlaGlyCysMetCysGlnLeuLeuMetPh 1712388 : AAACAGAtgattttcacgtttcacctAGCGGGATGTATGTGTCAATTGCTGATGTT : 1712442 328 : lThrPheThrSerAsnAspLeuIleGluGluSerArgAlaIleGlyHisAlaAlaT : 346 !|||!:!!:!!!!:!! !:!!||| !|||||| ! !:!: !.!.|||!.!| eThrTyrSerCysAspCysIleIleThrGluSerLeuAsnValThrGluAlaValT 1712443 : TACGTACAGCTGCGATTGTATAATAACGGAAAGTTTGAACGTGACGGAAGCGGTGT : 1712499 347 : yrAsnAlaAsnTrpGlnValLeu<->SerHisLysHisAspLysArgIleArgAsn : 363 ||:!!!.! |||! ! !||| ! ! !! !...! !:!! !||||||!!. yrAspGlyProTrpProArgLeuProMetSerThrArgGlyArgMetIleArgLys 1712500 : ACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGAAGAATGATAAGGAAG : 1712553 364 : AlaIleGlnMetIleMetValArgSerIleArgAlaCysSerIleSerAlaGlyGl : 382 ! !:!: !:!::!!!!::!!||||||! ! ! !!|||!!!:!:!!!||| !!|| AspLeuIleLeuValIleIleArgSerArgValProCysCysLeuThrAlaArgGl 1712554 : GATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTGCTTGACCGCCAGAGG : 1712610 383 : yPhePheProValSerLeuGluThrPheMetThr >>>> Target Intron 1 : 394 ||||||| !:!!||||||||||||!:!! !! ! 634 bp yPhePheValIleSerLeuGluThrTyrThrLys++ 1712611 : ATTCTTCGTAATATCTTTGGAAACGTATACGAAGgt.................... : 1712648 395 : >>>> ValMetGlyThrAlaAlaSerTyrPheThrLeuLeuArgAsnPheIleG : 410 |||!!:.!!||||||!.!|||||||||||||||||||||.!. !|||: ++ValIleSerThrAlaValSerTyrPheThrLeuLeuArgGlnArgIleG 1712649 : .....agGTTATAAGTACAGCAGTGTCGTACTTCACACTGTTAAGGCAACGTATAG : 1713328 411 : ln : 410 !! lu 1713329 : AG : 1713330 vulgar: CbirOr153 308 410 . KQ414915.1 1712387 1713330 + 171 M 45 135 G 0 3 M 40 120 5 0 2 I 0 630 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712388 1713330 171 + . gene_id 6 ; sequence CbirOr153 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1712388 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712388 1712645 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713330 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713330 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712388 1713330 171 + . alignment_id 6 ; Query CbirOr153 ; Align 1712388 309 135 ; Align 1712526 354 120 ; Align 1713280 394 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr153 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 272 -> 408 Target range: 1708070 -> 1708481 273 : LysMetGluSerIlePheMetTyrThrThrLeuCysGlnLeuMetValSerGlyIl : 291 ...:::...||||||||||||! ! !!.!:!!||| !|||:!: !! ! !! AsnIleArgSerIlePheMetSerArgAsnValCysLeuLeuLeuPheHisArgCy 1708071 : aatattcgttcgatttttatgTCTCGTAATGTTTGTTTACTACTATTTCACCGCTG : 1708125 292 : eLeuLeuCysValAlaGlyPheGlnValPheLeuGlyArgGlyThrLeuIleArgA : 310 !! !:!! !..!:!! !.!. !!:!! ! !! ! ! ! !!:!!!!:!:!| s***ValIleThrSerMetIle***LeuProGlnGluAspThrProIleMetGlnA 1708126 : TTGAGTAATTACATCTATGATATAATTACCACAGGAAGATACTCCCATTATGCAGC : 1708182 311 : rgThrIleTyrMetSerHisAlaAsnAlaCysValCysGlnLeuPheValValThr : 328 || !! !!:!:!!! !||| !!..!.!|||:!!|||||||||!!.:!! !!||| rgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuMetPheThr 1708183 : GCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGATGTTCACC : 1708236 329 : PheThrSerAsnAspLeuIleGluGluSerArgAlaIleGlyHisAlaAlaTyrAs : 347 !:!!:!!!!:!! !||||||..!|||||| ! !:!:!.!:!!||| !|||:! TyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIleTyrAs 1708237 : TACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATATACGA : 1708293 348 : nAlaAsnTrp<->GlnValLeuSerHisLysHisAspLysArgIleArgAsnAlaI : 365 !..!:::||| !!.:!!! !! ! !!!:! !! ::!! !:!:|||!!.! !: pCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAspL 1708294 : CTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATT : 1708350 366 : leGlnMetIleMetValArgSerIleArgAlaCysSerIleSerAlaGlyGlyPhe : 383 !: !.!.:!!!!:! !||||||! ! ! !!|||!!!:!!!!!||| !!|||||| euThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhe 1708351 : TGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTC : 1708404 384 : PheProValSerLeuGluThrPheMetThrValMetGlyThrAlaAlaSerTyrPh : 402 |||||||||||||||||||||!:!! :!!|||!!: !:!!.!! ! ! .! PheProValSerLeuGluThrTyrThrSerValIleHisSerThrPheHisThrIl 1708405 : TTCCCTGTGTCACTGGAAACGTACACTTCGGTAATTCATTCAACATTTCACACGAT : 1708461 403 : eThrLeuLeuArgAsnPhe : 408 .:!!:!!|||..! !!||| eSerMetLeuGluTyrPhe 1708462 : ATCGATGTTAGAGTATTTc : 1708481 vulgar: CbirOr153 272 408 . KQ414915.1 1708070 1708481 + 155 M 78 234 G 0 3 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1708071 1708481 155 + . gene_id 7 ; sequence CbirOr153 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1708071 1708481 . + . KQ414915.1 exonerate:protein2genome:local exon 1708071 1708481 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1708071 1708481 155 + . alignment_id 7 ; Query CbirOr153 ; Align 1708071 273 234 ; Align 1708308 351 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr153 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 309 -> 394 Target range: 1689489 -> 1689747 310 : ArgThrIleTyrMetSerHisAlaAsnAlaCysValCysGlnLeuPheValValTh : 328 ||| !|||!:!:!:! !||| !! !!.! !! !! !!..:::... || ArgLeuIlePheLeuPheHisMetIleGlySerPheIleHisIleIlePhePheTh 1689490 : CGCCTCATATTCTTATTCCACATGATCGGTAGCTTCATCCacataattttcttcac : 1689544 329 : rPheThrSerAsnAspLeuIleGluGluSerArgAlaIleGlyHisAlaAlaTyrA : 347 |::!!:!!!!..!! !|||||||||||||||! !! !|||!.! |||.!!||| rTyrSerCysGlyGlyLeuIleGluGluSerMetAspIleAlaThrAlaThrTyrA 1689545 : gtACAGTTGTGGTGGTTTGATAGAAGAGAGTATGGATATTGCAACAGCAACGTATG : 1689601 348 : snAlaAsnTrpGlnValLeu<->SerHisLysHisAspLysArgIleArgAsnAla : 364 !.!! ||| !|||||| ! !:!!||| !! !|||! !||||||... ! laGlyMetTrpThrValLeuProMetAsnLysValGlyLysMetIleArgGlyAsn 1689602 : CAGGAATGTGGACGGTTTTGCCAATGAATAAAGTTGGCAAAATGATACGAGGAAAT : 1689655 365 : IleGlnMetIleMetValArgSerIleArgAlaCysSerIleSerAlaGlyGlyPh : 383 !!::!!:!:!!:! |||||||||:!:!:! !!|||!!!|||!!!||||||||||| MetLysLeuMetThrValArgSerLeuGlnProCysCysIleThrAlaGlyGlyPh 1689656 : ATGAAGTTAATGACCGTAAGGTCGTTGCAACCGTGTTGCATAACTGCTGGTGGATT : 1689712 384 : ePheProValSerLeuGluThrPheMetThrVal : 394 ||||||||||||||||:!!||| !! .!!||| ePheProValSerLeuLysThrAlaThrAlaVal 1689713 : CTTTCCTGTCTCCTTGAAAACTGCTACCGCGGTA : 1689747 vulgar: CbirOr153 309 394 . KQ414915.1 1689489 1689747 + 145 M 44 132 G 0 3 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1689490 1689747 145 + . gene_id 8 ; sequence CbirOr153 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1689490 1689747 . + . KQ414915.1 exonerate:protein2genome:local exon 1689490 1689747 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1689490 1689747 145 + . alignment_id 8 ; Query CbirOr153 ; Align 1689490 310 132 ; Align 1689625 354 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr153 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 189 -> 233 Target range: 1681938 -> 1682070 190 : PhePheIleGluValLeuSerLeuIleHisSerGlyLeuLeuPheCysCysPheAs : 208 ||| !:!::!!..!||||||:!!:!:|||||||||:!!! !|||||||||||||| PheThrLeuGlnThrLeuSerValValHisSerGlyIleCysPheCysCysPheAs 1681939 : ttcaCTTTGCAGACATTATCTGTGGTGCATTCGGGAATTTGTTTCTGTTGTTTCGA : 1681993 209 : pValLeuLeuGlyLeuLeuAsnIleTyrThrAlaGlyGlnPheLysLeuLeuGlnH : 227 | !!!!||| !!:!!|||!:!!!::!!..!!.!||||||||||||:!!||||||: pAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLysIleLeuGlnA 1681994 : CAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAGATTTTACAAA : 1682050 228 : isArgLeuGluThrAlaLeu : 233 !!!:!|||:!!|||!.!||| snLysLeuGlnThrValLeu 1682051 : ACAAACTCCAAACAGTATTG : 1682070 vulgar: CbirOr153 189 233 . KQ414915.1 1681938 1682070 + 134 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681939 1682070 134 + . gene_id 9 ; sequence CbirOr153 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1681939 1682070 . + . KQ414915.1 exonerate:protein2genome:local exon 1681939 1682070 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681939 1682070 134 + . alignment_id 9 ; Query CbirOr153 ; Align 1681939 190 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr153 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 159 -> 205 Target range: 1694355 -> 1694493 160 : AsnValGlyLysAsnValSerAspArgLysLeuProPheAsnValTrpIleGlyVa : 178 ||||||||||||||| !|||!!:|||! !||||||||||||:!!|||:!!! ! ! AsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnMetTrpValAspPh 1694356 : AATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACATGTGGGTTGACTT : 1694410 179 : lProThrAsnValSerProAsnPheGluIleIlePhePheIleGluValLeuSerL : 197 !||||||...:!!|||||| !!!:!|||:!!:!!|||.!!|||:!!||| !!.!! eProThrGlyLeuSerProTyrTyrGluValLeuPheIleIleGlnValSerLysA 1694411 : TCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATACAGGTAAGCAAAC : 1694467 198 : euIleHisSerGlyLeuLeuPheCys : 205 !||| ! !! !!!!:!!! !||| rgIleSerArg***PheValCysCys 1694468 : GTATCTCTCGATAATTTGTATGTTGC : 1694493 vulgar: CbirOr153 159 205 . KQ414915.1 1694355 1694493 + 124 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694356 1694493 124 + . gene_id 10 ; sequence CbirOr153 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1694356 1694493 . + . KQ414915.1 exonerate:protein2genome:local exon 1694356 1694493 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694356 1694493 124 + . alignment_id 10 ; Query CbirOr153 ; Align 1694356 160 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr149NTE Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 210 Query range: 168 -> 376 Target range: 806529 -> 807590 169 : TyrThrCysValCysIleTyrLeuThrLeuMetValProIleIleIleCysGlyTyrA : 188 :!!..!||||||! :!: ! ! !:!! :!! !.!!! ! ! !.!:!!. HisValCysValLeuLeuLeuGlnGlyMetHisIlePhePheAsnAlaValAlaHisC 806530 : CACGTCTGCGTGTTACTGCTGCAAGGGATGCACATTTTCTTCAACGCCGTGGCTCACT : 806587 189 : laGlyAlaAspAlaTyrLeuLeuSerMetIleLeuHisValCysGlyGlnPheAlaAl : 207 .!||| !|||!.! !!!!!!!|||:!!! :!!|||:!!||||||||||||! ! ysGlyAsnAspGlyLeuPhePheSerLeuThrMetHisLeuCysGlyGlnPheGluIl 806588 : GCGGCAACGACGGCCTCTTCTTCAGCCTGACGATGCATCTGTGCGGTCAGTTTGAAAT : 806644 208 : aLeuThrCysLysValAsnAsnLeuLeuLysAsnHisLysAsnTyrArgArgAsnPhe : 226 !|||! ! !!.:!! .!.:!! ! .!. ! !! !|||!:!....!! eLeuLysMetAsnLeuAlaGluIleGluPheGluAlaIleAlaCysArgLysArgIle 806645 : TCTGAAGATGAATCTGGCGGAGATCGAGTTCGAGGCGATCGCTTGTCGGAAGCGAATC : 806701 227 : ThrAsnIleValLeuArgHisGlnHisLeuIleThrLeuAlaGluIleLeuGluAsnA : 246 ! !:!!||| !|||||| ! ||| ..!|||.!!.!. !||||||.!.! GlyValLeuValLysArgHisCysLysLeuAlaValLeuThrAsnAspLeuGluGlnS 806702 : GGCGTTCTCGTGAAACGACACTGCAAACTGGCGGTGTTGACCAACGATCTCGAGCAGA : 806761 247 : snPheAsnTyrIlePheLeuGlnGlnIleValGlyThrValPheIleLeuCysLeuTh : 265 :!|||!:! |||.!!||| !|||:!!:!! !!:!!.!!!.:!!:!!|||:!! erPheSerMetIleIleLeuValGlnLeuMetMetSerAlaLeuLeuIleCysValGl 806762 : GCTTCAGTATGATTATTCTGGTGCAACTCATGATGAGTGCGTTGCTAATTTGCGTAGA : 806818 266 : r{S} >>>> Target Intron 1 >>>> {er}LeuAsnMetLeuAlaAsnSer : 273 !{.} 437 bp {!!}!!! !.!.|||!.! ! ! u{G}++ ++{ly}PheValPheLeuValAlaLeu 806819 : A{G}gt.........................ag{GT}TTCGTCTTCCTGGTCGCTCTG : 807279 274 : GluPheGlyAspAsnThrAsnPheIleValPheLeuLeuTyrThrSerCysValPheM : 293 ... !||||||..! :!: ! !!!!:!! ! ! ! !:!!.!.! SerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuMetValThrLeuLeuI 807280 : AGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGA : 807339 294 : etThrIlePheGlyTyrCysTyrIleGlyAspCysLeuIleThrGluSerSerGlyLe : 312 !: !:!:!:! !|||..!||| |||:!! ||| :!!..!!!!..!! !:! leGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluIl 807340 : TTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAAT : 807396 313 : uGlnAspAlaPheTyrAsnIleLysTrpTyrLysAsnProProGlnHisThrArgLeu : 331 ! !.!.||| !|||:!! ! ||||||::: !! ! !!!. .!!||| ! eAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAsp 807397 : TGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGAT : 807453 332 : IleSerIleCysMetThrArgAlaGluLysProLeuThrLeuThrAlaGlyLysPheC : 351 :!! !:!: !!!: !|||!.!.!...!|||! ! !:!!||||||||||||||| LeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheV 807454 : CTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCG : 807513 352 : ysIleLeuSerLeuSerThrPheThrAsnIleValLysThrSerMetAlaTyrMetSe : 370 ! :!!!:!|||! !||||||! !.!.|||:!!|||.!!||| :!!|||:!!|| alProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSe 807514 : TCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTC : 807570 371 : rLeuLeuArgLysIleLeu : 376 |:!!:!!!:! !!!::!! rValMetLysValMetMet 807571 : TGTAATGAAGGTAATGATG : 807590 vulgar: CbirOr149NTE 168 376 . KQ414940.1 806529 807590 + 210 M 97 291 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806530 807590 210 + . gene_id 1 ; sequence CbirOr149NTE ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 806530 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806530 806821 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807258 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807590 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807590 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 806530 807590 210 + . alignment_id 1 ; Query CbirOr149NTE ; Align 806530 169 291 ; Align 807261 267 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr143 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 272 -> 383 Target range: 807257 -> 807587 273 : GlyPheLeuIleValThrAlaIleGlySerProAspAlaThrGlnGlnIleIleLysC : 292 ||||||:!!.!!:!!..!|||:!:.!!!!! !||| !..! ! !:!:! !..! GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 293 : ysIleLeuPhePheThrIleThrAsnLeuGluAlaTyrIleTyrCysTyrAlaGlyGl : 311 !:!!|||.!. ! |||:!: ! :!!:!! !|||:!!|||..!|||||||||.! heValLeuMetValThrLeuLeu---IleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807316 : TCGTTCTGATGGTGACTTTGCTG---ATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 312 : uTyrLeuAsnAsnLysSerLysGluIleGlyLeuAlaThrTyrAsnCysAlaTrpTyr : 330 . |||.!.:::::!!!!:!!||||||!.!! !|||.!!|||:!!! ! !|||||| nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 331 : AsnLeuLysProLysAspSerArgValLeuLeuPheIleIleLeuArgSerGlnLysG : 350 ..!! ! ! ! ! ! :!!|||! !||||||!!.||||||! !|||.!!.!...!! ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 351 : lnLeuThrLeuThrAlaGlyLysMetMetAspLeuSerLeuGlnSerPheAlaSerIl : 369 ! ! !:!!||||||||||||.!.:!: :!!!:!||| !!!||| !..!|| roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 370 : eMetAsnIleSerGlySerTyrLeuSerValLeuLeuAlaMet : 383 |:!!!!. !|||||||||||||||||||||:!! !!.!||| eLeuLysAlaSerGlySerTyrLeuSerValMetLysValMet 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: CbirOr143 272 383 . KQ414940.1 807257 807587 + 177 M 27 81 G 1 0 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807587 177 + . gene_id 1 ; sequence CbirOr143 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807587 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807258 807587 177 + . alignment_id 1 ; Query CbirOr143 ; Align 807258 273 81 ; Align 807339 301 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr150 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 239 Query range: 194 -> 389 Target range: 806568 -> 807587 195 : PheLeuThrIleGlyAlaThrAlaAlaAspSerAlaMetIleSerLeuThrPheTyrL : 214 ||| !.!!:!:!.! ! !!.! !|||.!! !.!..!!|||||||||.!.:!!| PheAsnAlaValAlaHisCysGlyAsnAspGlyLeuPhePheSerLeuThrMetHisL 806569 : TTCAACGCCGTGGCTCACTGCGGCAACGACGGCCTCTTCTTCAGCCTGACGATGCATC : 806626 215 : euCysGlyGlnLeuSerIleLeuAspHisArgMetLysAsnIleAspLeuLysSerSe : 233 |||||||||||!!!..!|||||| ! !.!:!! !.!.|||!!:!!!:!!:!!! euCysGlyGlnPheGluIleLeuLysMetAsnLeuAlaGluIleGluPheGluAlaIl 806627 : TGTGCGGTCAGTTTGAAATTCTGAAGATGAATCTGGCGGAGATCGAGTTCGAGGCGAT : 806683 234 : rLysCysHisTyrGluMetLysValLeuValLysArgHisMetGluLeuIleGlnLeu : 252 ! |||!.. ! ..!!!: |||||||||||||||||| :!!||| !||| eAlaCysArgLysArgIleGlyValLeuValLysArgHisCysLysLeuAlaValLeu 806684 : CGCTTGTCGGAAGCGAATCGGCGTTCTCGTGAAACGACACTGCAAACTGGCGGTGTTG : 806740 253 : AlaAsnIleLeuAlaAspThrPheSerTrpLeuMetPheValGlnThrValGlyIleI : 272 .!!||| !|||! !.!.!:!|||||| !:!!!!:.!.|||||| !:!! !! ! ThrAsnAspLeuGluGlnSerPheSerMetIleIleLeuValGlnLeuMetMetSerA 806741 : ACCAACGATCTCGAGCAGAGCTTCAGTATGATTATTCTGGTGCAACTCATGATGAGTG : 806800 273 : lePheSerLeuCysIleIle{L} >>>> Target Intron 1 >>>> {eu}Ty : 280 !!. !:!!|||:!! !{ } 437 bp { !}!: laLeuLeuIleCysValGlu{G}++ ++{ly}Ph 806801 : CGTTGCTAATTTGCGTAGAA{G}gt.........................ag{GT}TT : 807261 281 : rGlnLeuLeuMetThrAlaGluGlyGluLysGluIleAspGluIleIleHisPheMet : 299 ! !!!|||:!:.!! !... !:!! ! .!.:!!! ! !:!:! !|||:!: eValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheVal 807262 : CGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTT : 807318 300 : MetTyrSerIleAlaValValLeuLeuAlaPheCysTyrCysPheLeuGlyGluCysL : 319 :!! ! !:!:.!!:!!:!!:!!! ! !!:! !|||..!!:! !|||.!. | Leu---MetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrL 807319 : CTG---ATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACAC : 807375 320 : euIleSerGluSerLeuAlaLeuGluTrpAlaCysTyrSerIleAsnTrpTyrGluSe : 338 || |||..!!!! !! !:!!! ! |||..!|||..! ! !||||||...!! euGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCy 807376 : TCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTG : 807432 339 : rSerSerGluPheValHisLeuLeuMetIleCysIleAlaArgSerArgLysProLeu : 357 ! !.!!.!. !.!... !|||:!::!: !||| !|||.!!!.!..!|||! ! sHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyr 807433 : CCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTAT : 807489 358 : CysLeuThrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyThrIleIleL : 377 !!:!!||||||||||||||| ! !.!.!:!||| |||||| ! !|||:!:| ArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuL 807490 : CGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGA : 807549 378 : ysAlaSerMetAlaTyrLeuSerValLeuLysThrIle : 389 |||||||| :!!||||||||||||:!!|||..!!!: ysAlaSerGlySerTyrLeuSerValMetLysValMet 807550 : AAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: CbirOr150 194 389 . KQ414940.1 806568 807587 + 239 M 84 252 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 21 63 G 1 0 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806569 807587 239 + . gene_id 1 ; sequence CbirOr150 ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 806569 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806569 806821 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807258 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807587 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 806569 807587 239 + . alignment_id 1 ; Query CbirOr150 ; Align 806569 195 252 ; Align 807261 280 63 ; Align 807324 302 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr141 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 275 -> 383 Target range: 807266 -> 807587 276 : PheLeuIleAlaIleGlyAsnProAspAlaThrGluGlnIleValArgSerLeuLeuP : 295 ||||||:!!|||:!:.!!!.. !||| !..!! ! !:!: ||||||!!!:!!. PheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeu---ArgSerPheValL 807267 : TTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTG---AGGAGCTTCGTTC : 807321 296 : heTyrAlaValThrAsnLeuGluValPheIlePheCysTyrAlaGlyGluTyrLeuLy : 314 !. !.!..! ! :!!:!!:!!!:!:!!!:!..!|||||||||.!. |||:! euMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGl 807322 : TGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGA : 807378 315 : sAsnLysThrThrAlaIleGlyMetAlaAlaTyrAsnSerAlaTrpTyrGluLeuLys : 333 !:::::!||| !! !|||!.!...|||||||||:!!||| !||||||...! ! ! uSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHis 807379 : GTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCAC : 807435 334 : ProLysHisSerArgProLeuIlePheIleIleLeuArgAlaGlnLysGlnLeuThrI : 353 ! ! :!!||| !|||:!!!!.||||||! !|||!.!.!...!! ! ! !| GlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgI 807436 : GGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTA : 807495 354 : leThrValGlyLysIleMetAspLeuSerLeuGluCysPheAlaSerIleMetLysAl : 372 |||||!.!||||||.!!:!: :!!!:!||| !||| !..!|||:!!||||| leThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAl 807496 : TAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGC : 807552 373 : aSerGlySerTyrLeuSerIleLeuLeuAlaMet : 383 |||||||||||||||||||:!!:!! !!.!||| aSerGlySerTyrLeuSerValMetLysValMet 807553 : TTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: CbirOr141 275 383 . KQ414940.1 807266 807587 + 180 M 14 42 G 1 0 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807267 807587 180 + . gene_id 1 ; sequence CbirOr141 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807267 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807267 807587 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807267 807587 180 + . alignment_id 1 ; Query CbirOr141 ; Align 807267 276 42 ; Align 807309 291 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr151 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 299 -> 391 Target range: 807305 -> 807581 300 : IleLysTyrPheSerTyrLeuLeuMetAlaLeuPheGlnLeuLeuLeuPheCysIleP : 319 :!:!:! !||| ! :!!:!!! !|||.!!||||||! !|||!:!..! ! LeuArgSerPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrA 807306 : TTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACG : 807363 320 : roGlyAspAlaLeuIleAspGluSerSerThrIleSerArgThrLeuTyrThrIleAs : 338 !!|||:!!.!!||| .....!!!!..! !|||:!!!:!.!! !||| ! ! laGlyAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLe 807364 : CGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCT : 807420 339 : pTrpTyrGluLeuProValLeuPheLysIleGluValCysLeuLeuMetLeuArgSer : 357 !||||||...! !! !! !! ! ! !!!::!! !|||:!!!!:! !|||.!! uTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGly 807421 : TTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGA : 807477 358 : GlnLysSerSerLysIleThrAlaGlyLysPheTyrValMetHisLeuGluAsnPheA : 377 .!...! !!! !:::|||||||||||||||||| ! !|||:!!||| !.!|||! AsnSerProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheL 807478 : AATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCA : 807537 378 : snAlaValLeuSerThrAlaValSerTyrPheMetLeuLeuArg : 391 !.! !:!!|||!.!.!!:!!! !||||||.!. :!!:!!!:! ysGluIleLeuLysAlaSerGlySerTyrLeuSerValMetLys 807538 : AGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: CbirOr151 299 391 . KQ414940.1 807305 807581 + 108 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807306 807581 108 + . gene_id 1 ; sequence CbirOr151 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807306 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807306 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807306 807581 108 + . alignment_id 1 ; Query CbirOr151 ; Align 807306 300 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr148 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 194 -> 273 Target range: 806580 -> 806817 195 : GlyTyrAlaGlyAlaAspAlaTyrValLeuSerMetValLeuHisIleCysGlyGlnT : 214 !.!:!!..!||| !|||!.! ! !!!!!|||:!!..!:!!|||:!:|||||||||! AlaHisCysGlyAsnAspGlyLeuPhePheSerLeuThrMetHisLeuCysGlyGlnP 806581 : GCTCACTGCGGCAACGACGGCCTCTTCTTCAGCCTGACGATGCATCTGTGCGGTCAGT : 806638 215 : yrAlaAlaLeuAlaTyrLysValAspAsnLeuLeuArgHisGlnGluAsnTyrGlnAr : 233 :!! ! !||| ! !!.:!!! .!.:!! ! !.!. ! !! !!:!!: heGluIleLeuLysMetAsnLeuAlaGluIleGluPheGluAlaIleAlaCysArgLy 806639 : TTGAAATTCTGAAGATGAATCTGGCGGAGATCGAGTTCGAGGCGATCGCTTGTCGGAA : 806695 234 : gAsnIleGlyAsnIleValIleLysHisArgLeuLeuIleThrLeuAlaGluIleLeu : 252 !...|||||| !:!!|||! !::!||| !! !||| ..!|||.!!.!. !||| sArgIleGlyValLeuValLysArgHisCysLysLeuAlaValLeuThrAsnAspLeu 806696 : GCGAATCGGCGTTCTCGTGAAACGACACTGCAAACTGGCGGTGTTGACCAACGATCTC : 806752 253 : GluLysAsnPheThrIleIlePheLeuGlnGlnThrLeuGlyThrIleLeuLeuLeuC : 272 |||:!!!:!|||!:!!!:|||.!!||| !||| !:!! !!:! ||||||:!!| GluGlnSerPheSerMetIleIleLeuValGlnLeuMetMetSerAlaLeuLeuIleC 806753 : GAGCAGAGCTTCAGTATGATTATTCTGGTGCAACTCATGATGAGTGCGTTGCTAATTT : 806812 273 : ysLeu : 273 ||:!! ysVal 806813 : GCGTA : 806817 vulgar: CbirOr148 194 273 . KQ414940.1 806580 806817 + 108 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806581 806817 108 + . gene_id 1 ; sequence CbirOr148 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 806581 806817 . + . KQ414940.1 exonerate:protein2genome:local exon 806581 806817 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 806581 806817 108 + . alignment_id 1 ; Query CbirOr148 ; Align 806581 195 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr146 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 279 -> 385 Target range: 807266 -> 807590 280 : PheGlnLeuAlaIleMetLeuHisAspAsnIleGlnLeuTyrGlnThrLeuIlePheL : 299 |||! !:!!|||:!:! ! ! ||||||:!! ! !! ::!!:!!!!:!!.!.: PheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuM 807267 : TTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGA : 807324 300 : euIleLeuThrIleLeuGluLeuTyrMetPheSerLeuSerGlyAsnLysLeuIleIl : 318 !!:!: ! !:!::!!:!!||||||:!:!:!:!!! !:!!||||||! !||| etValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSe 807325 : TGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTC : 807381 319 : eGluSerAspAlaValGlyGluSerAlaTyrArgSerAspTrp<-><->IleGlyGly : 335 ..!!!!!!:! !:!!!.!:!!:!!|||||| !||| !||| ! !||| rArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGly 807382 : GCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGG : 807438 336 : ThrPheGlyArgSerLeuGlnIleValMetIleArgSerArgIleProSerArgIleT : 355 ! !.!|||..!|||! :!::!!!!: !|||.!!!.! |||! !||||||| HisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleT 807439 : CACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAA : 807498 356 : hrValGlyLysPheCysAspValSerLeuArgSerPheThrGlnValLeuSerThrSe : 374 ||!.!||||||||| ! :!!!:!||| !!!!|||! !:!!:!!|||!.!.!!|| hrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSe 807499 : CAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTC : 807555 375 : rPheSerTyrMetMetValLeuPheThrIleMet : 385 | !||||||:!! |||:!! ..!!!:||| rGlySerTyrLeuSerValMetLysValMetMet 807556 : TGGCTCGTATCTGTCTGTAATGAAGGTAATGATG : 807590 vulgar: CbirOr146 279 385 . KQ414940.1 807266 807590 + 149 M 53 159 G 0 6 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807267 807590 149 + . gene_id 1 ; sequence CbirOr146 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807267 807590 . + . KQ414940.1 exonerate:protein2genome:local exon 807267 807590 . + . insertions 6 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807267 807590 149 + . alignment_id 1 ; Query CbirOr146 ; Align 807267 280 159 ; Align 807432 333 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr144 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 272 -> 383 Target range: 807257 -> 807587 273 : GlyPheLeuIleValCysAlaIleGlyThrProAspAlaThrGlnGlnIleIleArgS : 292 ||||||:!!.!!:!! !|||:!:.!!||| !||| !.! ! !:!:|||| GlyPheValPheLeuValAlaLeuSerThrLysAsp---AsnValAlaAlaLeuArgS 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGAC---AACGTTGCAGCATTGAGGA : 807312 293 : erValLeuPheTyrIleIleThrAsnLeuGluAlaPheIlePheCysPheAlaGlyGl : 311 || !!:!!.!. :!:! ! ! :!!:!! !!:!:!!!:!..!!:!||||||.! erPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807313 : GCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 312 : uTyrLeuAsnAsnLysSerLysAlaIleGlyValAlaAlaTyrAsnSerAlaTrpTyr : 330 . |||.!.:::::!!!!:!!! !|||!.! !|||||||||:!!||| !|||||| nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 331 : AsnLeuLysProGluAspGlyArgIleLeuSerPheIleIleLeuArgSerGlnLysG : 350 ..!! ! ! !.!.! !.!||| !||| !!!.||||||! !|||.!!.!...!! ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 351 : lnLeuThrLeuThrValGlyLysMetMetAspLeuSerLeuGluTyrPheAlaSerIl : 369 ! ! !:!!|||!.!||||||.!.:!: :!!!:!||| !||| !..!|| roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 370 : eMetSerAlaSerGlySerTyrLeuSerValMetLeuAlaMet : 383 |:!!!.!||||||||||||||||||||||||||| !!.!||| eLeuLysAlaSerGlySerTyrLeuSerValMetLysValMet 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: CbirOr144 272 383 . KQ414940.1 807257 807587 + 165 M 12 36 G 1 0 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807587 165 + . gene_id 1 ; sequence CbirOr144 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807587 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807258 807587 165 + . alignment_id 1 ; Query CbirOr144 ; Align 807258 273 36 ; Align 807294 286 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr140 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 270 -> 381 Target range: 807257 -> 807587 271 : GlyPheIleIleValThrAlaIleGlyAsnProAspAlaSerGluLysIleMetArgS : 290 ||||||:!!.!!:!!..!|||:!:.!!!.. !||| !:!! ! !:!!|||| GlyPheValPheLeuValAlaLeuSerThrLysAsp---AsnValAlaAlaLeuArgS 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGAC---AACGTTGCAGCATTGAGGA : 807312 291 : erLeuLeuPheTyrAlaValThrAsnIleGluAlaPheIlePheCysPheAlaGlyGl : 309 ||!!!:!!.!. !.!..! ! |||:!! !!:!:!!!:!..!!:!||||||.! erPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807313 : GCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 310 : uTyrLeuSerAsnLysSerLysAlaIleGlyAsnAlaAlaTyrAsnSerAlaTrpTyr : 328 . |||..!:::::!!!!:!!! !|||!.!.!.|||||||||:!!||| !|||||| nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 329 : AspMetLysIleThrAspArgArgThrPheLeuPheValIleLeuArgSerGlnLysG : 348 ! ! !! !||| !.!!|||!!.:!!|||! !|||.!!.!...!! ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 349 : lnLeuSerPheThrAlaGlyLysMetMetThrLeuSerLeuGluGlyPheThrAsnIl : 367 ! ! !!.!.||||||||||||.!.:!: !!:!!!:!||| !|||! !.!.|| roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 368 : eMetLysAlaSerGlySerTyrLeuSerValLeuLeuAlaMet : 381 |:!!|||||||||||||||||||||||||||:!! !!.!||| eLeuLysAlaSerGlySerTyrLeuSerValMetLysValMet 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: CbirOr140 270 381 . KQ414940.1 807257 807587 + 167 M 12 36 G 1 0 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807587 167 + . gene_id 1 ; sequence CbirOr140 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807587 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807258 807587 167 + . alignment_id 1 ; Query CbirOr140 ; Align 807258 271 36 ; Align 807294 284 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr139 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 272 -> 384 Target range: 807254 -> 807587 273 : ValGlyPheValLeuValThrSerIleGlyAlaSerAsnSerPhePheThrIleLeuL : 292 ..!|||||||||!!!:!!..!:!!:!:.!!.!!!.!:!!!:! !!.!! !|||! ThrGlyPheValPheLeuValAlaLeuSerThrLysAspAsn---ValAlaAlaLeuA 807255 : ACAGGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAAC---GTTGCAGCATTGA : 807309 293 : ysIleLeuAlaPheTyrPheValMetAsnPheGluAlaPheValTyrCysPheAlaGl : 311 :!! !!!!!.!.!. ! ..!:!! .!!:!! !!:!:!!|||..!!:!||||| rgSerPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGl 807310 : GGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGG : 807366 312 : yGluTyrLeuSerSerLysSerLysMetIleGlyGluAlaAlaTyrAspSerSerTrp : 330 |.!. |||..!|||::!!!!:!! |||!.!:!!||||||||||||||| !||| yAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrp 807367 : CAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGG : 807423 331 : TyrGlnSerThrProGlnAspSerArgIleIleLeuPheLeuIleMetArgSerGlnA : 350 |||!::!!! ! !!!.! :!!||| !:!!|||!!.:!!||| |||.!!.!.: TyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnS 807424 : TACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATT : 807483 351 : snGlnLeuThrIleThrIleGlyLysPheMetAspLeuSerLeuGluArgPheAlaAs : 369 ::! ! ! !|||||| !|||||||||:!: :!!!:!||| ! !||| !.! erProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGl 807484 : CGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGA : 807540 370 : nIleIleLysAlaSerAlaSerTyrValSerValLeuLeuAlaMet : 384 .|||:!:|||||||||!.!||||||:!!||||||:!! !!.!||| uIleLeuLysAlaSerGlySerTyrLeuSerValMetLysValMet 807541 : GATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: CbirOr139 272 384 . KQ414940.1 807254 807587 + 170 M 14 42 G 1 0 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807255 807587 170 + . gene_id 1 ; sequence CbirOr139 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807255 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807255 807587 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807255 807587 170 + . alignment_id 1 ; Query CbirOr139 ; Align 807255 273 42 ; Align 807297 288 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr138 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 285 -> 382 Target range: 807296 -> 807587 286 : ValIleLeuIleLysThrCysLeuPheTyrPheSerMetAsnLeuGluAlaPheThrP : 305 ||| ! !:!:!:!!:!! !:!!.!. ! !!!:!! :!!:!! !!:! !! ValAlaAlaLeuArgSerPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuT 807297 : GTTGCAGCATTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTT : 807354 306 : heCysPheAlaGlyGluTyrLeuSerThrGluSerLysIleIleGlyAspAlaAlaTy : 324 :!..!!:!||||||.!. |||..!:!!..!!!!:!! !|||!.!.!.|||||||| yrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTy 807355 : ACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTA : 807411 325 : rAsnSerLeuTrpTyrGluSerThrSerLysAspThrGlnIleIleLeuPheLeuIle : 343 |:!!||||||||||||...!!! !.!! ! ! .!!::! !:!!|||!!.:!!||| rAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIle 807412 : TGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATC : 807468 344 : MetArgSerGlnAsnGlnLeuThrIleThrIleGlyLysIleThrAspMetSerLeuL : 363 |||.!!.!.:::! ! ! !|||||| !||||||.!!..! |||!:!||| HisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuP 807469 : CATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTT : 807528 364 : ysArgPheSerAspIleValLysAlaSerAlaSerTyrIleSerValLeuLeuAlaMe : 382 ! !|||!.!!!:|||:!!|||||||||!.!||||||:!:||||||:!! !!.!|| heThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSerValMetLysValMe 807529 : TCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAAT : 807585 383 : t : 382 | t 807586 : G : 807587 vulgar: CbirOr138 285 382 . KQ414940.1 807296 807587 + 154 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807297 807587 154 + . gene_id 1 ; sequence CbirOr138 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807297 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807297 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807297 807587 154 + . alignment_id 1 ; Query CbirOr138 ; Align 807297 286 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr145 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 269 -> 376 Target range: 807257 -> 807578 270 : GlyPheIleIleValAsnSerIleGlyThrGluGlySerSerMetIleIleArgSerL : 289 ||||||:!!.!!:!! !:!!:!:.!!|||:!!! !!:! ! !:!:||||||! GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 290 : euLeuPheTyrValValIleAsnLeuGluAlaPheIlePheCysPheAlaGlyGluTy : 308 !!:!!.!. |||..!:!: :!!:!! !!:!:!!!:!..!!:!||||||.!. heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 309 : rLeuSerMetLysSerLysMetIleGlyAspAlaAlaTyrGluSerLeuTrpTyrAsp : 327 |||..! !::!!!!:!! |||!.!.!.|||||||||!!:|||||||||||| ! rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 328 : LeuThrProSerGluThrArgIleLeuLeuPheLeuIleMetArgSerGlnLysGlnL : 347 ! ! ! ! !! !.!!||| !||||||!!.:!!||| |||.!!.!...!! ! CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 348 : euThrIleThrValGlyArgPheThrAsnLeuSerLeuGlnGlnPheAlaAsnIleIl : 366 ! !||||||!.!|||!:!|||..! :!!!:!||| ||| !.!.|||:! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 367 : eLysLeuSerAlaSerTyrValSerValLeu : 376 :||| !|||!.!||||||:!!||||||:!! uLysAlaSerGlySerTyrLeuSerValMet 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATG : 807578 vulgar: CbirOr145 269 376 . KQ414940.1 807257 807578 + 178 M 107 321 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807578 178 + . gene_id 1 ; sequence CbirOr145 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807578 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807578 178 + . alignment_id 1 ; Query CbirOr145 ; Align 807258 270 321 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr152PSE Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 356 Query range: 0 -> 241 Target range: 116833 -> 117962 1 : ValAsnThrTrpMetGluSerPheThrMetIleLeuSerLeuLeuSerGlyGlnAlaP : 20 :!!:!!||| .!.||||||||||||||||||:!!|||:!!:!!.!!|||||||||! LeuAspThrIlePheGluSerPheThrMetIleIleSerIleValGlyGlyGlnAlaA 116834 : CTGGACACCATTTTCGAGTCGTTCACGATGATCATCTCGATCGTGGGCGGTCAGGCGC : 116891 21 : roLeuThrIleLeuLeuLeuPheArgGlyArgLeuGlnArgLeuLeuSerThrCysGl : 39 !!!!:!!||||||! !! !|||||||||! !! !!:!! !:!!|||..!.!!||||| rgPheSerIleLeuSerTrpPheArgGlyThrCysArgThrMetLeuGluAlaCysGl 116892 : GGTTCTCGATCCTGTCGTGGTTCCGCGGTACCTGTCGAACGATGCTCGAAGCCTGCGA : 116948 40 : uGluLeuTrpAlaThrLeuSerAlaThrGluLysLysCysValHisAspTyrAlaLys : 58 | ||||||:!!||||||!.! !! !||||||:!! !|||!....!||||||!!. uPheLeuTrpSerThrLeuLysProArgGluLysGluIleValArgSerTyrAlaAsn 116949 : GTTCCTCTGGTCGACTCTGAAACCGCGGGAGAAGGAGATCGTTCGAAGTTACGCGAAC : 117005 59 : ThrThrGlnArgLeuThrTyrPheTyrLeuPheGlyCysAlaPheThrIlePhePheT : 78 ! !|||::! !|||||| !! !|||||| !.!!|||!.!||||||||||||.!!| LysThrArgLeuLeuThrArgCysTyrLeuAlaSerCysValPheThrIlePheIleT 117006 : AAAACGAGATTGCTGACCCGCTGCTACTTGGCCAGCTGCGTCTTCACCATCTTCATTT : 117065 79 : yrAlaValAlaSerLeuPheValAlaGlnArgAspGluSerSerAsnValThrThrAr : 97 ||!.!||| !:!!||||||! ! !..!!:! !..! !!..!|||:!!:!! !!. yrGlyValPheAlaLeuPheAspGlnSerGlnProSerProGluAsnLeuSerGluAs 117066 : ACGGCGTGTTCGCTCTCTTCGATCAATCGCAACCCTCGCCGGAGAACCTCTCGGAGAA : 117122 98 : gValLeuProTyr{A} >>>> Target Intron 1 >>>> {la}ArgLeuVal : 105 !! ! ! ! !!{ } 39 bp { !}!:!! !..! nGlyThrValAsp{M}++ -+{et}GlnGlnThr 117123 : CGGCACGGTCGAC{A}gt.........................gg{TG}CAACAAACG : 117185 106 : GluValSerArgThrProCysTyrGluIleArgCysSerMetIleAsnValGlyValT : 125 ! !! !..!! ! !!||| ! ! !! !:!!|||:!:|||||||||:!!| ProTrpTyrGluIleThrCysAlaLeuGlnLeuPheAlaMetLeuAsnValGlyIleT 117186 : CCGTGGTACGAGATCACTTGCGCCCTTCAGCTGTTCGCGATGTTGAACGTCGGCATCA : 117245 126 : hrCysValAlaAlaAspThrIleGlyProValLeuIleLeuThrValSerGlyHisPh : 144 ||||||||!.!!.!|||||||||||||||:!!!!!:!!||| !..!!!!!.!||||| hrCysValGlyValAspThrIleGlyProLeuPheValLeuLeuThrCysAlaHisPh 117246 : CCTGTGTCGGAGTAGACACGATCGGTCCTCTCTTCGTCCTGCTCACTTGTGCTCATTT : 117302 145 : eLysValLeuAsnSerArgMetLeuAsnLeuSerAsnArgAlaCysTrpAsnLysCys : 163 | ! |||:!!...||||||!!: !!:!||| ! ... :!!:::! ! eAspValIleArgSerArgIleGluSerLeuHis---------AlaIleAspArgSer 117303 : CGACGTGATTCGATCTCGAATCGAGAGTTTACAC---------GCGATCGATCGTTCT : 117350 164 : ProArgAsnArgAlaLysProAspLeuGlnLeuCysValGlnTyrHisGlnIleValP : 183 !!!!!!:! ! !! ! !:!!|||!:!:!!! ||| !|||!:!!!::!!. SerSerSerValGlnThrArgAsnLeuArgValLeuValIleArgHisArgMetLeuL 117351 : TCGAGCAGCGTACAGACGAGAAATCTCCGAGTCTTGGTGATCCGTCATCGAATGCTCC : 117410 184 : he{As} >>>> Target Intron 2 >>>> {p}GluAlaIleSerLysAlaVa : 191 !!{||} 376 bp {|}|||||||||.!!:::|||!. eu{As}++ ++{p}GluAlaIleGlyArgAlaAl 117411 : TC{GA}gt.........................ag{C}GAAGCGATCGGTCGTGCAGC : 117810 192 : lTyrCysThrSerTrpTyrHisPheSerTyrAlaLeuLysArgSerLeuAsnIleVal : 210 !||| ..! !!|||:!! !:! !! !..!|||::!!:! !! !|||!!::!! aTyrThrValProTrpHisTrpTyrProArgCysLeuArgLysProThrAsnMetLeu 117811 : CTATACGGTGCCTTGGCATTGGTACCCTCGTTGCTTGCGAAAACCAACCAACATGCTG : 117867 211 : AlaLeuArgSerGlnLysAlaAlaGlnLeuThrAlaGlyTyrPheValProLeuSerL : 230 !:!!|||.!!|||||| !!!.!!::|||||||||||| ! .!!||| !||||||| MetIleArgGlyGlnLysProValArgLeuThrAlaGlyLysIleValGlyLeuSerL 117868 : ATGATCAGAGGTCAGAAACCGGTTCGTCTGACCGCCGGAAAAATCGTCGGACTCTCTC : 117927 231 : euGlnThrPheAlaSerValArgPheIleThrSer : 241 ||:!!||||||||||||||| ! !!:!!! !||| euGluThrPheAlaSerValSerValValIleSer 117928 : TGGAAACGTTTGCCTCTGTATCCGTCGTTATCTCT : 117962 vulgar: CbirOr152PSE 0 241 . KQ414940.1 116833 117962 + 356 M 101 303 S 0 1 5 0 2 I 0 35 3 0 2 S 1 2 M 53 159 G 3 0 M 25 75 S 0 2 5 0 2 I 0 372 3 0 2 S 1 1 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 116834 117962 356 + . gene_id 1 ; sequence CbirOr152PSE ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 116834 117137 . + . KQ414940.1 exonerate:protein2genome:local exon 116834 117137 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 117138 117139 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 117138 117176 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 117175 117176 . + . intron_id 0 ; splice_site "GG" KQ414940.1 exonerate:protein2genome:local cds 117177 117414 . + . KQ414940.1 exonerate:protein2genome:local exon 117177 117414 . + . insertions 0 ; deletions 3 KQ414940.1 exonerate:protein2genome:local splice5 117415 117416 . + . intron_id 2 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 117415 117790 . + . intron_id 2 KQ414940.1 exonerate:protein2genome:local splice3 117789 117790 . + . intron_id 1 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 117791 117962 . + . KQ414940.1 exonerate:protein2genome:local exon 117791 117962 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 116834 117962 356 + . alignment_id 1 ; Query CbirOr152PSE ; Align 116834 1 303 ; Align 117179 103 159 ; Align 117338 159 75 ; Align 117792 185 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr144 Target: LHQN01049708.1 Habropoda laboriosa contig49708, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 0 -> 84 Target range: 57 -> 309 1 : MetIleArgLysSerThrIleAsnArgThrThrGluIleMetPheThrLeuPheGlyIleTrpP : 22 |||||| !::!!:!|||!!:!:!!:!:!!..!:!!.!! .!. !!!! !!|||||||||| MetIleLeuArgAsnThrMetSerGlnSerValLysPheGlyLeuHisPheValGlyIleTrpP 58 : ATGATATTACGAAATACAATGAGCCAATCTGTTAAGTTTGGTCTACATTTTGTCGGTATTTGGC : 121 23 : roGlyThrSerCysIleGlnIleArgArgIlePheTrpPheIleThrIleIleIleValGlnPh : 43 |||||||| !!! ! !...:!!!.!!:!||| !||| !!|||.!!!!: !:!!:!!||| roGlyThrProPheProSerLeuHisLysIleGlyTrpValIleAlaMetAlaValLeuGlnTh 122 : CAGGAACACCATTCCCAAGTTTACATAAAATTGGTTGGGTCATAGCGATGGCTGTACTTCAAAC : 184 44 : eLeuHisTyrArgTyrLeuLeuThrHisPheTyrSerAspAspLeuPheAsnLeuMetAspCys : 64 !! !!!.|||||||||:!!:!!||||||!:! ! ||||||..!|||.!. ! !!!:||| ! rTyrGlnTyrArgTyrIleIleThrHisTyrLysSerAspSerLeuMetValThrIleAspAsn 185 : TTATCAGTACAGATACATCATTACGCATTATAAATCTGATAGTCTTATGGTCACAATAGATAAT : 247 65 : LeuSerSerPheLeuAlaTyrAlaLysValMetThrLysPheIleValPheTrpPheAsn : 84 ||||||! ! !:!! !!!:!.!! |||::: |||...|||::: ||| ||| LeuSerIleThrMetProPheThrLeuValLeuIleLysLeuIleIleThrTrpAlaAsn 248 : TTGAGCATCACCATGCCATTCACTCTagtgttaattaaattaattattacttgGGCAAAT : 309 vulgar: CbirOr144 0 84 . LHQN01049708.1 57 309 + 159 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049708.1 exonerate:protein2genome:local gene 58 309 159 + . gene_id 1 ; sequence CbirOr144 ; gene_orientation . LHQN01049708.1 exonerate:protein2genome:local cds 58 309 . + . LHQN01049708.1 exonerate:protein2genome:local exon 58 309 . + . insertions 0 ; deletions 0 LHQN01049708.1 exonerate:protein2genome:local similarity 58 309 159 + . alignment_id 1 ; Query CbirOr144 ; Align 58 1 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr142CTE Target: LHQN01049708.1 Habropoda laboriosa contig49708, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 0 -> 86 Target range: 57 -> 315 1 : MetLeuArgLysSerThrLeuAsnArgThrIleLysPheLeuLeuIleLeuPheGlyIleTrpP : 22 |||:!! !::!!:!|||:!!!:!!:!:!!:!!|||||| !||| !!!! !!|||||||||| MetIleLeuArgAsnThrMetSerGlnSerValLysPheGlyLeuHisPheValGlyIleTrpP 58 : ATGATATTACGAAATACAATGAGCCAATCTGTTAAGTTTGGTCTACATTTTGTCGGTATTTGGC : 121 23 : roGlyThrSerTyrIleLeuValCysArgGlyPheTrpIleIleThrIleGlyPheIleGluPh : 43 |||||||| !!!:! ! !:!! !!:! ! !|||:!!|||.!!!!:!.! ! :!!:!! roGlyThrProPheProSerLeuHisLysIleGlyTrpValIleAlaMetAlaValLeuGlnTh 122 : CAGGAACACCATTCCCAAGTTTACATAAAATTGGTTGGGTCATAGCGATGGCTGTACTTCAAAC : 184 44 : eCysHisTyrArgTyrPheValThrHisIleTyrSerAlaGluLeuLeuAspLeuIleAspCys : 64 !! !!!.|||||||||.!!:!!|||||| ! ! |||! !...|||:!!! ! !|||||| ! rTyrGlnTyrArgTyrIleIleThrHisTyrLysSerAspSerLeuMetValThrIleAspAsn 185 : TTATCAGTACAGATACATCATTACGCATTATAAATCTGATAGTCTTATGGTCACAATAGATAAT : 247 65 : ThrCysSerPheLeuAlaHisAlaLysValLeuIleLysPheIleValPheTrpLeuAsnGlnG : 86 ! !!! ! !:!! !! !.!! ||||||||||||...|||::: ||| !||| ! | LeuSerIleThrMetProPheThrLeuValLeuIleLysLeuIleIleThrTrpAlaAsnTyrG 248 : TTGAGCATCACCATGCCATTCACTCTagtgttaattaaattaattattacttgGGCAAATTATG : 313 87 : ly : 86 || ly 314 : GG : 315 vulgar: CbirOr142CTE 0 86 . LHQN01049708.1 57 315 + 153 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049708.1 exonerate:protein2genome:local gene 58 315 153 + . gene_id 1 ; sequence CbirOr142CTE ; gene_orientation . LHQN01049708.1 exonerate:protein2genome:local cds 58 315 . + . LHQN01049708.1 exonerate:protein2genome:local exon 58 315 . + . insertions 0 ; deletions 0 LHQN01049708.1 exonerate:protein2genome:local similarity 58 315 153 + . alignment_id 1 ; Query CbirOr142CTE ; Align 58 1 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr139 Target: LHQN01049708.1 Habropoda laboriosa contig49708, whole genome shotgun sequence Model: protein2genome:local Raw score: 193 Query range: 0 -> 84 Target range: 57 -> 309 1 : MetLysValThrSerThrIleGlyArgSerValGluIleProLeuArgMetPheGlyIleTrpP : 22 |||! !:!! !!:!|||!!:.!!!:!||||||:!!.!! !|||!.!.!. !!|||||||||| MetIleLeuArgAsnThrMetSerGlnSerValLysPheGlyLeuHisPheValGlyIleTrpP 58 : ATGATATTACGAAATACAATGAGCCAATCTGTTAAGTTTGGTCTACATTTTGTCGGTATTTGGC : 121 23 : roGlySerProTyrValSerLeuCysArgLeuPheTrpThrIleAlaLeuValThrAlaGlnTy : 43 |||||!!!|||!:! !|||||| !!:!:!! !|||..!||||||:!!!.!..! !||| roGlyThrProPheProSerLeuHisLysIleGlyTrpValIleAlaMetAlaValLeuGlnTh 122 : CAGGAACACCATTCCCAAGTTTACATAAAATTGGTTGGGTCATAGCGATGGCTGTACTTCAAAC : 184 44 : rPheGlnTyrGlnTyrIleIleThrHisIleTyrIleAlaAspLeuSerAspLeuMetAspGly : 64 !!:!||||||::!||||||||||||||| ! ! !! !..!|||! !! ! !!!:|||..! rTyrGlnTyrArgTyrIleIleThrHisTyrLysSerAspSerLeuMetValThrIleAspAsn 185 : TTATCAGTACAGATACATCATTACGCATTATAAATCTGATAGTCTTATGGTCACAATAGATAAT : 247 65 : LeuSerAlaThrLeuAlaPheThrLeuLeuPheIleLysLeuValThrPheTrpIleAsn : 84 |||||| !|||:!! !!|||||||||:::...|||||||||::: ||| !||| LeuSerIleThrMetProPheThrLeuValLeuIleLysLeuIleIleThrTrpAlaAsn 248 : TTGAGCATCACCATGCCATTCACTCTagtgttaattaaattaattattacttgGGCAAAT : 309 vulgar: CbirOr139 0 84 . LHQN01049708.1 57 309 + 193 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049708.1 exonerate:protein2genome:local gene 58 309 193 + . gene_id 1 ; sequence CbirOr139 ; gene_orientation . LHQN01049708.1 exonerate:protein2genome:local cds 58 309 . + . LHQN01049708.1 exonerate:protein2genome:local exon 58 309 . + . insertions 0 ; deletions 0 LHQN01049708.1 exonerate:protein2genome:local similarity 58 309 193 + . alignment_id 1 ; Query CbirOr139 ; Align 58 1 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr145 Target: LHQN01049708.1 Habropoda laboriosa contig49708, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 0 -> 81 Target range: 60 -> 303 1 : MetPheAlaAsnThrIleThrArgSerIleGluIleGlyLeuArgValAlaGlyIleTrpProA : 22 !!:!!. !||||||!!:!:!!:!|||:!!:!!.!!||||||!.! !!!.!||||||||||||. IleLeuArgAsnThrMetSerGlnSerValLysPheGlyLeuHisPheValGlyIleTrpProG 61 : ATATTACGAAATACAATGAGCCAATCTGTTAAGTTTGGTCTACATTTTGTCGGTATTTGGCCAG : 124 23 : snValSerTyrThrIleAlaSerArgLeuLeuTrpThrMetThrMetIleAlaAlaGlnThrPh : 43 ....! !!!:! !!! ! ! !!:!:!! !|||..!!!:.!!||| !!.! !||||||!: lyThrProPheProSerLeuHisLysIleGlyTrpValIleAlaMetAlaValLeuGlnThrTy 125 : GAACACCATTCCCAAGTTTACATAAAATTGGTTGGGTCATAGCGATGGCTGTACTTCAAACTTA : 187 44 : eGlnTyrArgHisMetValLeuHisLeuHisSerGluAspLeuSerProLeuMetAspGlyLeu : 64 !|||||||||:!!!!::!! !|||! ! ! |||!!:..!|||! ! ! !!!:|||..!||| rGlnTyrArgTyrIleIleThrHisTyrLysSerAspSerLeuMetValThrIleAspAsnLeu 188 : TCAGTACAGATACATCATTACGCATTATAAATCTGATAGTCTTATGGTCACAATAGATAATTTG : 250 65 : SerAlaThrLeuSerTyrSerLeuLeuCysValLysLeuIleValPheTrp : 81 ||| !|||:!! !!!:!!!!|||::: :::|||||||||::: ||| SerIleThrMetProPheThrLeuValLeuIleLysLeuIleIleThrTrp 251 : AGCATCACCATGCCATTCACTCTagtgttaattaaattaattattacttgG : 303 vulgar: CbirOr145 0 81 . LHQN01049708.1 60 303 + 174 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049708.1 exonerate:protein2genome:local gene 61 303 174 + . gene_id 1 ; sequence CbirOr145 ; gene_orientation . LHQN01049708.1 exonerate:protein2genome:local cds 61 303 . + . LHQN01049708.1 exonerate:protein2genome:local exon 61 303 . + . insertions 0 ; deletions 0 LHQN01049708.1 exonerate:protein2genome:local similarity 61 303 174 + . alignment_id 1 ; Query CbirOr145 ; Align 61 1 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr145 Target: LHQN01049752.1 Habropoda laboriosa contig49752, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 110 -> 199 Target range: 132 -> 399 111 : MetThrSerValAlaAsnLeuCysHisArgPheSerAsnSerIleIleGlyLeuHisSerMetA : 132 |||:!!!.!..!!.!.!.||| ...::::::! !|||!!:..!! !:!!! !:!:: MetSerLysThrGlyGlnLeuSerPheTyrLeuThrSerIleIleMetSerSerTyrMetValS 133 : ATGTCAAAAACCGGACAgctatctttttatttaacaagcATTATTATGTCTTCGTATATGGTAT : 196 133 : laValLeuPheTyrCysIleGlyValValAlaLeuSerAsnHisAspGlyIleAlaGluArgGl : 153 !!!.! !|||||| ! !|||..!:!!!...........::::::..! !!.!...||||| erAlaAlaPheTyrIleThrGlyThrIleGlyPheGlnGluAsnAsnAlaSerValSerArgGl 197 : CTGCAGCATTTTACATAACTGGTACTATTGgatttcaagaaaataatgCTTCAGTATCTAGGGA : 259 154 : uLeuPheLeuLysMetGluLeuProPheGluSerGlyThrSerProValTyrGluLeuValMet : 174 ||||.!!|||||||||!!:|||||||||! !!!!.!! !|||||| !||||||||||||:!: uLeuLeuLeuLysMetAspLeuProPheGlyThrSerGluSerProAsnTyrGluLeuValVal 260 : GCTCCTTCTGAAAATGGATTTGCCTTTTGGGACCAGCGAATCGCCGAATTACGAACTTGTAGTA : 322 175 : ThrThrGlnPheLeuHisGlnMetThrSerAlaThrValIleGlyValLeuSerAlaLeuLeuV : 196 ||||||||| !!||| !!!.:!::!!:!!||| !..!.!!||||||!!!||||||||||||: ThrThrGlnValLeuIleHisValSerAlaAlaLeuThrPheGlyValPheSerAlaLeuLeuL 323 : ACTACACAAGTCCTTATTCACGTATCAGCGGCCTTAACATTCGGTGTATTCAGTGCTCTTCTCT : 388 197 : alThrLeuVal : 199 !!! !:!!||| euMetValVal 389 : TAATGGTGGTA : 399 vulgar: CbirOr145 110 199 . LHQN01049752.1 132 399 + 157 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01049752.1 exonerate:protein2genome:local gene 133 399 157 + . gene_id 1 ; sequence CbirOr145 ; gene_orientation . LHQN01049752.1 exonerate:protein2genome:local cds 133 399 . + . LHQN01049752.1 exonerate:protein2genome:local exon 133 399 . + . insertions 0 ; deletions 0 LHQN01049752.1 exonerate:protein2genome:local similarity 133 399 157 + . alignment_id 1 ; Query CbirOr145 ; Align 133 111 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr143 Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 316 -> 383 Target range: 824 -> 1194 317 : SerLysGluIleGlyLeuAlaThrTyrAsnCysAlaTrpTyrAsnLeuLysProLysAspSe : 337 |||:!! !|||||| !.!!.!!|||.!.! ! !||||||:!!|||::: !!! !!:|| SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSe 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAG : 885 338 : rArgValLeuLeuPheIleIleLeuArgSerGlnLysGlnLeuThrLeuThrAlaGlyLysM : 358 |!:!:!!|||:!! !:!!|||||||||||||||||| !!!|||!..||| ||||||. rGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysP 886 : CCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaat : 948 359 : etMetAspLeuSerLeuGlnSerPheAlaSer >>>> Target Intron 1 >>>> I : 369 .. ...|||||||||:!!||||||.!!:!! 169 bp | heSerSerLeuSerLeuGluSerPheThrAla++ ++I 949 : tttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.........................agA : 1150 370 : leMetAsnIleSerGlySerTyrLeuSerValLeuLeuAlaMet : 383 |||||!!.:!!|||!.!||||||:!!|||||||||||||||:!! leMetLysValSerAlaSerTyrIleSerValLeuLeuAlaVal 1151 : TCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTG : 1194 vulgar: CbirOr143 316 383 . LHQN01050112.1 824 1194 + 152 M 52 156 5 0 2 I 0 165 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 1194 152 + . gene_id 1 ; sequence CbirOr143 ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 825 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1194 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1194 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 1194 152 + . alignment_id 1 ; Query CbirOr143 ; Align 825 317 156 ; Align 1150 369 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr145 Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 312 -> 379 Target range: 824 -> 1194 313 : SerLysMetIleGlyAspAlaAlaTyrGluSerLeuTrpTyrAspLeuThrProSerGluTh : 333 |||:!!:!:||||||:!!.!!|||||||||! !||||||||||||||| ! !!!!!|||!: SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSe 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAG : 885 334 : rArgIleLeuLeuPheLeuIleMetArgSerGlnLysGlnLeuThrIleThrValGlyArgP : 354 !!:!:!!|||:!! !:!!|||:!!|||||||||||| !!!|||...||| |||:::| rGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysP 886 : CCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaat : 948 355 : heThrAsnLeuSerLeuGlnGlnPheAlaAsn >>>> Target Intron 1 >>>> I : 365 ||::::::|||||||||:!!...|||.!! ! 169 bp | heSerSerLeuSerLeuGluSerPheThrAla++ ++I 949 : tttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.........................agA : 1150 366 : leIleLysLeuSerAlaSerTyrValSerValLeuLeuAlaLeu : 379 ||!!:|||:!!||||||||||||:!!|||||||||||||||:!! leMetLysValSerAlaSerTyrIleSerValLeuLeuAlaVal 1151 : TCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTG : 1194 vulgar: CbirOr145 312 379 . LHQN01050112.1 824 1194 + 180 M 52 156 5 0 2 I 0 165 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 1194 180 + . gene_id 1 ; sequence CbirOr145 ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 825 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1194 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1194 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 1194 180 + . alignment_id 1 ; Query CbirOr145 ; Align 825 313 156 ; Align 1150 365 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr141 Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 319 -> 383 Target range: 833 -> 1194 320 : IleGlyMetAlaAlaTyrAsnSerAlaTrpTyrGluLeuLysProLysHisSerArgProLe : 340 ||||||! .!!||||||.!.! ! !||||||!!:|||::: !!! .!.|||!:!! !|| IleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSerGlnLeuLe 834 : ATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAGCCAACTTCT : 894 341 : uIlePheIleIleLeuArgAlaGlnLysGlnLeuThrIleThrValGlyLysIleMetAspL : 361 |||| !:!!|||||||||:!!|||||| !!!|||...||| ||||||... ...| uIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysPheSerSerL 895 : AATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaattttcaagtc : 957 362 : euSerLeuGluCysPheAlaSer >>>> Target Intron 1 >>>> IleMetLysA : 372 ||||||||||| !!|||.!!:!! 169 bp |||||||||! euSerLeuGluSerPheThrAla++ ++IleMetLysV 958 : tCTCCTTGGAAAGCTTTACGGCCgt.........................agATCATGAAAG : 1159 373 : laSerGlySerTyrLeuSerIleLeuLeuAlaMet : 383 .!|||!.!||||||:!!|||:!!|||||||||:!! alSerAlaSerTyrIleSerValLeuLeuAlaVal 1160 : TCTCAGCATCATATATATCAGTACTTCTTGCAGTG : 1194 vulgar: CbirOr141 319 383 . LHQN01050112.1 833 1194 + 149 M 49 147 5 0 2 I 0 165 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 834 1194 149 + . gene_id 1 ; sequence CbirOr141 ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 834 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 834 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1194 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1194 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 834 1194 149 + . alignment_id 1 ; Query CbirOr141 ; Align 834 320 147 ; Align 1150 369 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr140 Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 314 -> 381 Target range: 824 -> 1194 315 : SerLysAlaIleGlyAsnAlaAlaTyrAsnSerAlaTrpTyrAspMetLysIleThrAspAr : 335 |||:!! !|||||||||.!!||||||.!.! ! !|||||||||:!:::: !|||!!:!! SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSe 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAG : 885 336 : gArgThrPheLeuPheValIleLeuArgSerGlnLysGlnLeuSerPheThrAlaGlyLysM : 356 !!:! !.!.:!! !||||||||||||||||||||| !!!!!!|||||| ||||||. rGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysP 886 : CCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaat : 948 357 : etMetThrLeuSerLeuGluGlyPheThrAsn >>>> Target Intron 1 >>>> I : 367 .. :::||||||||||||.!!|||||| ! 169 bp | heSerSerLeuSerLeuGluSerPheThrAla++ ++I 949 : tttcaagtctCTCCTTGGAAAGCTTTACGGCCgt.........................agA : 1150 368 : leMetLysAlaSerGlySerTyrLeuSerValLeuLeuAlaMet : 381 ||||||||!.!|||!.!||||||:!!|||||||||||||||:!! leMetLysValSerAlaSerTyrIleSerValLeuLeuAlaVal 1151 : TCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTG : 1194 vulgar: CbirOr140 314 381 . LHQN01050112.1 824 1194 + 171 M 52 156 5 0 2 I 0 165 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 1194 171 + . gene_id 1 ; sequence CbirOr140 ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 825 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1194 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1194 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 1194 171 + . alignment_id 1 ; Query CbirOr140 ; Align 825 315 156 ; Align 1150 367 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr144 Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 316 -> 369 Target range: 824 -> 983 317 : SerLysAlaIleGlyValAlaAlaTyrAsnSerAlaTrpTyrAsnLeuLysProGluAspGlyA : 338 |||:!! !|||||| !.!!||||||.!.! ! !||||||:!!|||::: !! !!:.!!! SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSerG 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAGCC : 888 339 : rgIleLeuSerPheIleIleLeuArgSerGlnLysGlnLeuThrLeuThrValGlyLysMetMe : 359 :!:!!|||! ! !:!!|||||||||||||||||| !!!|||!..||| ||||||... lnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysPheSe 889 : AACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaattttc : 951 360 : tAspLeuSerLeuGluTyrPheAlaSerIle : 369 ...|||||||||||| !|||.!!:!!:!! rSerLeuSerLeuGluSerPheThrAlaVal 952 : aagtctCTCCTTGGAAAGCTTTACGGCCGTA : 983 vulgar: CbirOr144 316 369 . LHQN01050112.1 824 983 + 117 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 983 117 + . gene_id 1 ; sequence CbirOr144 ; gene_orientation . LHQN01050112.1 exonerate:protein2genome:local cds 825 983 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 983 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 983 117 + . alignment_id 1 ; Query CbirOr144 ; Align 825 317 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr142CTE Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 315 -> 366 Target range: 824 -> 977 316 : SerLysAlaIleGlyAlaAlaAlaTyrAsnSerLeuTrpTyrAsnLeuLysProLysAspSerA : 337 |||:!! !|||||| !.!!||||||.!.! !|||||||||:!!|||::: !!! !!:|||! SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSerG 825 : AGCCAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAGCC : 888 338 : rgValLeuLeuPheMetIleLeuArgSerGlnLysGlnLeuThrLeuThrAlaGlyLysMetMe : 358 :!:!!|||:!! !:!:|||||||||||||||||| !!!|||!..||| ||||||... lnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysPheSe 889 : AACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaattttc : 951 359 : tAspLeuSerLeuGlnSerPheThr : 366 ...|||||||||:!!||||||||| rSerLeuSerLeuGluSerPheThr 952 : aagtctCTCCTTGGAAAGCTTTACG : 977 vulgar: CbirOr142CTE 315 366 . LHQN01050112.1 824 977 + 131 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 825 977 131 + . gene_id 1 ; sequence CbirOr142CTE ; gene_orientation . LHQN01050112.1 exonerate:protein2genome:local cds 825 977 . + . LHQN01050112.1 exonerate:protein2genome:local exon 825 977 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 825 977 131 + . alignment_id 1 ; Query CbirOr142CTE ; Align 825 316 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr156NTE Target: KQ414601.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold45, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 144 Query range: 154 -> 265 Target range: 1071016 -> 1070674 155 : AsnAsnThrGluSerPheMetLeuProTyr<->ArgIleHisThrPhePheAspIl : 172 |||.!.|||..! !!:! ||||||!:! !!! !|||..!.!! !!! AsnGluThrArgValTyrGluLeuProPheProSerTyrHisValLeuProTyrLy 1071016 : AACGAAACGAGAGTCTACGAATTGCCCTTCCCTAGTTACCATGTTCTCCCGTACAA : 1070962 173 : eThrAspThrTyrThrTyrValLeuIleTyrLeuTyrLeuPheProMetLeuTyrA : 191 !||| ! !!:!|||:!!:!!!!:||| !!:!! ! !|||:!::!!! ! sHisAspPheArgSerTyrIleIleMetTyrAlaPheGlnGlyProLeuMetLeuV 1070961 : GCATGACTTTCGCAGTTACATTATCATGTACGCGTTCCAGGGTCCGCTTATGTTGG : 1070905 192 : laSerMetLeuHisMetAlaAlaIleCysLeuLeuValValLeuValPheHisIle : 209 .!.!!:!! !|||!!:.!!.!!:!! !!|||:!!||| !||||||.!.|||:!! alGlyLeuAsnHisIleThrThrLeuSerLeuIleValSerLeuValLeuHisVal 1070904 : TGGGGTTGAACCACATAACCACCCTCAGTTTAATAGTTAGCCTGGTGCTGCATGTT : 1070851 210 : CysGlyGluLeuSerIleLeuSerTyrArgIleLysAsnIleLysValGlnSerMe : 228 ||||||:!!!!!|||||||||||||||||||||:::||||||::::::||||||! CysGlyLysPheSerIleLeuSerTyrArgIleGlnAsnIleGlnIleGlnSerLy 1070850 : TGCGGTAAATTCTCGATCTTGTCGTATCgtatacaaaatattcaaatccaGTCGAA : 1070794 229 : t<-><->MetValLysArgPheArgThrPheValArgMetHisLeuLysIleIleT : 245 :!: !!:!!:!.!!..! !||||||! ! |||:!!|||:!:|||! sAspAsnLeuAsnArgLysIleGluAspPheValThrAspHisIleLysLeuIleL 1070793 : AGATAATTTAAACAGGAAAATCGAGGATTTCGTGACCGATCACATCAAATTGATAT : 1070737 246 : rpMetAlaLysSerValAspAspIlePheAsnPheIleLeuLeuAspGluLeuLeu : 263 !.!..! ::: |||||| :::|||! !||| ! ...! ! ! eu***ValSerLeuIle***ArgIlePhe***TrpIleTyrLeuLysSerCysAla 1070736 : TATAAGTATCACttatttgacgaattttctaatGGATATATCTCAAAAGTTGTGCG : 1070683 264 : SerAsn : 265 ! !||| IleAsn 1070682 : ATAAat : 1070675 vulgar: CbirOr156NTE 154 265 . KQ414601.1 1071016 1070674 - 144 M 10 30 G 0 3 M 64 192 G 0 6 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414601.1 exonerate:protein2genome:local gene 1070675 1071016 144 - . gene_id 1 ; sequence CbirOr156NTE ; gene_orientation . KQ414601.1 exonerate:protein2genome:local cds 1070675 1071016 . - . KQ414601.1 exonerate:protein2genome:local exon 1070675 1071016 . - . insertions 9 ; deletions 0 KQ414601.1 exonerate:protein2genome:local similarity 1070675 1071016 144 - . alignment_id 1 ; Query CbirOr156NTE ; Align 1071017 155 30 ; Align 1070984 165 192 ; Align 1070786 229 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr154 Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 253 -> 400 Target range: 1306934 -> 1305876 254 : LeuThrLeuIleCysTyrValArgAsnMetGlnArgAlaPheAlaValIleLeuLe : 272 ||| !||| ! !! |||!.!::::::...... |||... !|||:!!!! LeuLeuLeuTyrSerValValAsnAspValAsnAsnLeuPheThrProIleValPh 1306934 : CTACTTTTATACAGCGTGGTGAATGatgtgaataatttatttactccCATCGTTTT : 1306880 273 : uGlyGlnLeuLeuLeuSerSerIleValIleCysPheGlyGlyPheGlnPheLeuG : 291 !! !||||||||| !|||.!!||||||||||||!!..!!|||||| ! !!!!!! eValGlnLeuLeuThrSerGlyIleValIleCysLeuSerGlyPheAlaValPheA 1306879 : CGTACAACTTCTTACAAGCGGAATAGTAATTTGTTTAAGTGGATTCGCGGTTTTCG : 1306823 292 : luThrAsnValAlaValArgLysPheLeuPheAlaCysHisPheValGlyGlyLeu : 309 !:!.!:!!!.! !..! !! .!. !!:!!.!! !:!!!!. !..! !! ! spAsnAspAlaArgThrAspIleLeuLysTyrValSerTyrLeuSerSerIleTrp 1306822 : ATAACGACGCCCGTACCGATATTCTGAAATACGTATCTTATTTGTCCTCGATTTGG : 1306769 310 : IleGlnLeuPheIleTyrThrTrpThrCysAsnAspIleIleIleGlnSerThrAl : 328 :!:||||||!!.:!!!:: !! ! !! !!.!. !:!!:!! !:!!||| !! LeuGlnLeuLeuLeuTrpCysLeuProGlyGluIleLeuValGlnGluSerLeuGl 1306768 : TTGCAACTTTTGTTATGGTGTTTGCCCGGTGAAATTCTCGTTCAAGAGAGTTTAGA : 1306712 329 : aIleSerAspAlaAlaTyr<->AsnSerLysTrpTyrLeuLeuSerAsnAsnAspP : 346 !|||.!! !!!.!!.!||| ||| ! !|||||| ||| | uIleGlyHisValValTyrLeuAsnValProTrpTyr------------AsnLeuP 1306711 : AATAGGACACGTAGTCTACTTAAATGTACCATGGTAC------------AATTTGC : 1306667 347 : roGlyLysThrLeuArgLysGlyLeuIleMetIleMetIleArgAlaArgArgPro : 364 || !! !! !|||||| ||| !|||!!:!!::!!||||||!:!!:! ! roProIleTyrGlnArgLys---LeuCysMetMetIleLeuArgAlaGlnGlnTyr 1306666 : CGCCAATTTACCAGAGAAAA---CTTTGCATGATGATCCTTAGGGCACAACAATAT : 1306616 365 : CysThrLeuThrAlaGlyTyrValThrValIleSerLeuAspThrPheMetGly : 383 |||!:!:!!|||||| ! !! !..!:!:|||:!! !!|||!!.! !.!! CysSerIleThrAlaLeuThrPheArgThrLeuSerIleHisThrLeuThrSer++ 1306615 : TGCAGCATCACGGCATTAACGTTTCGAACGTTGTCTATTCACACGTTAACGAGCgt : 1306559 384 : >>>> Target Intron 1 >>>> IleLeuSerLysAlaMetSerTyrPheTh : 392 629 bp :!!!!!!:!! !||| ||||||||||| ++ValPheAsnThrAlaAlaSerTyrPheTh 1306558 : .........................agGTATTCAATACAGCCGCTTCATATTTCAC : 1305903 393 : rLeuLeuArgGlnMetSerGluGlu : 400 ||||||||||||||||..!:!!:!! rLeuLeuArgGlnMetGlnGlnLys 1305902 : TTTGCTGCGACAAATGCAACAAAAG : 1305877 vulgar: CbirOr154 253 400 . KQ414608.1 1306934 1305876 - 110 M 81 243 G 0 3 M 5 15 G 4 0 M 9 27 G 1 0 M 29 87 5 0 2 I 0 625 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1305877 1306934 110 - . gene_id 1 ; sequence CbirOr154 ; gene_orientation + KQ414608.1 exonerate:protein2genome:local cds 1306560 1306934 . - . KQ414608.1 exonerate:protein2genome:local exon 1306560 1306934 . - . insertions 3 ; deletions 5 KQ414608.1 exonerate:protein2genome:local splice5 1306558 1306559 . - . intron_id 1 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1305931 1306559 . - . intron_id 1 KQ414608.1 exonerate:protein2genome:local splice3 1305931 1305932 . - . intron_id 0 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1305877 1305930 . - . KQ414608.1 exonerate:protein2genome:local exon 1305877 1305930 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1305877 1306934 110 - . alignment_id 1 ; Query CbirOr154 ; Align 1306935 254 243 ; Align 1306689 335 15 ; Align 1306674 344 27 ; Align 1306647 354 87 ; Align 1305931 383 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr159 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence Model: protein2genome:local Raw score: 304 Query range: 256 -> 411 Target range: 457508 -> 459207 257 : HisArgGlyGlyPheAlaGluTrpPheGlyArgSerValArgAspHisGlnArgLeuA : 276 ||| !..! !||| !... ! !:! !! !!!!:!!!:! !||||||||||||! HisAspAsnThrPheLeuArgArgTyrLysThrCysLeuGlnPheHisGlnArgLeuI 457509 : CACGACAACACGTTTCTTCGTCGTTACAAGACCTGTCTGCAATTTCATCAGAGATTGA : 457566 277 : rgValIleIleAspAspPheAsnLysIleTyrAsnMetCysMetPheValGlnMetLe : 295 ! !|||! ! ! |||!:!|||!:!||||||!:! ! !!|||||||||||||||:! leSerIleThrLysAspTyrAsnArgIleTyrSerSerSerMetPheValGlnMetIl 457567 : TCTCCATAACCAAAGATTACAACAGAATCTACAGCTCGAGCATGTTCGTCCAGATGAT : 457623 296 : uLeuSerIleThrMetIleCysLeuThrSerPheGlnLeuLeuLeu >>>> Targe : 311 !! !|||! !:!!!!:||||||||||||.!!|||||| !:!!:!! eSerSerThrSerIleIleCysLeuThrGlyPheGlnAlaValVal++ 457624 : CTCCAGCACTTCGATTATTTGCTTAACTGGTTTCCAAGCTGTCGTGgt.......... : 457673 312 : t Intron 1 >>>> ValThrGlyGlnSerSer<->ThrPheLysPheSerLeuTy : 323 67 bp ||| !|||||||||||| ! !.!.||||||.!!:!!|| ++ValGlyGlyGlnSerSerAspIleMetLysPheGlyIleTy 457674 : ...............agGTCGGAGGGCAGAGCTCGGACATCATGAAGTTCGGGATCTA : 457777 324 : rLeuIleAlaAlaAlaMetGlnIlePhePheValCysTrpLeuGlyAsnGluValMet : 342 ||||! !|||||| ! |||:!:!!.!:!:!!||||||||||||||||||:!!! rLeuSerAlaAlaIleSerGlnLeuLeuTyrIleCysTrpLeuGlyAsnGluLeuSer 457778 : CTTGAGCGCGGCCATATCTCAGCTGTTGTACATCTGTTGGCTGGGGAACGAGCTGAGC : 457834 343 : TyrGln >>>> Target Intron 2 >>>> SerAlaLeuLeuThrGlnSerGl : 352 |||..! 87 bp |||:!!:!!:!! !::!||||| TyrSer++ ++SerSerValIleAspArgSerGl 457835 : TACTCGgt.........................agAGTTCGGTGATAGACAGGAGTCA : 457951 353 : nTrpLeuSerGlyTrpGluAspGluLeuSerAsnThrLysThrGlyArgLeuLeuIle : 371 ||||||||||||||||.!. !!||| ! |||!..! !! !!:!:!!!!!! ! nTrpLeuSerGlyTrpAsnHisGlu---HisLeuThrSerIleValLysIlePheThr 457952 : GTGGCTCTCCGGTTGGAATCACGAA---CATTTGACTAGTATCGTGAAAATCTTCACT : 458005 372 : LeuSerMetIlePheSerThrArgThrLeuAsnIleLysAlaGlyValPheTyrAspL : 391 ||||||! !!:|||!!!! !!:!:!!:!!!..:!:||||||||||||||||||! | LeuSerThrMetPheThrArgGlnSerIleThrLeuLysAlaGlyValPheTyrValL 458006 : CTGTCCACCATGTTCACCAGACAGTCGATTACGTTGAAGGCTGGCGTATTTTATGTAC : 458065 392 : euAsnMetGluThrPheThrThr >>>> Target Intron 3 >>>> ValLeu : 400 ||::!:!!|||||||||! !.!! 1080 bp :!!:!! euSerLeuGluThrPheIleAla++ ++IleVal 458066 : TATCTCTGGAGACTTTTATCGCGgt.........................agATCGTA : 459172 401 : LysGlyAlaTyrSerValPheValLeuLeuAsn : 411 !:! !!:!!||||||||||||..!||||||||| ArgArgSerTyrSerValPheThrLeuLeuAsn 459173 : AGGAGGTCCTACTCAGTCTTCACTCTATTGAAC : 459207 vulgar: CbirOr159 256 411 . KQ414618.1 457508 459207 + 304 M 54 162 5 0 2 I 0 63 3 0 2 M 6 18 G 0 3 M 28 84 5 0 2 I 0 83 3 0 2 M 16 48 G 1 0 M 37 111 5 0 2 I 0 1076 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 457509 459207 304 + . gene_id 1 ; sequence CbirOr159 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 457509 457670 . + . KQ414618.1 exonerate:protein2genome:local exon 457509 457670 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 457671 457672 . + . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 457671 457737 . + . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 457736 457737 . + . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 457738 457842 . + . KQ414618.1 exonerate:protein2genome:local exon 457738 457842 . + . insertions 3 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 457843 457844 . + . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 457843 457929 . + . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 457928 457929 . + . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 457930 458088 . + . KQ414618.1 exonerate:protein2genome:local exon 457930 458088 . + . insertions 0 ; deletions 1 KQ414618.1 exonerate:protein2genome:local splice5 458089 458090 . + . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 458089 459168 . + . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 459167 459168 . + . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 459169 459207 . + . KQ414618.1 exonerate:protein2genome:local exon 459169 459207 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 457509 459207 304 + . alignment_id 1 ; Query CbirOr159 ; Align 457509 257 162 ; Align 457738 311 18 ; Align 457759 317 84 ; Align 457930 345 48 ; Align 457978 362 111 ; Align 459169 399 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr168 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 205 Query range: 92 -> 209 Target range: 1052965 -> 1052614 93 : TyrAspArgLeuGlnTyrValIleTyrGluLeuGluAspTyrCysLysArgAlaLy : 111 |||! ! !|||||| :!!||| |||:!! ||| !|||..!|||:! TyrGlySerLeuGlnArgIleIleThrGluMetIleThrTyrValLysGluAlaGl 1052965 : TATGGTTCTTTACAGCGAATAATTACAGAAATGATCACGTACGTCAAAGAGGCGCA : 1052911 112 : sProGluGluValIleValPheHisArgTyrIleAspAsnCysArgSerPheTyrI : 130 !! ! ||| ! !:!!.!!|||!.!||||||.!.!!.|||!:! !|||||| nGlnPheGluArgGluIleLeuHisAsnTyrIleGlnLysCysLysLeuPheTyrG 1052910 : GCAATTCGAAAGGGAAATTCTCCACAACTATATCCAAAAATGCAAACTTTTTTACG : 1052854 131 : leGlySerValSerAlaPheThrValThrAlaLeuLeuLeuCysIleSerProAla : 148 !||||||:!!! ! ! !:!! !||| !! !!!! :!!.!!|||!.! lyGlySerLeuIleTrpThrTyrLeuCysAlaThrCysPheValLeuGlyProVal 1052853 : GTGGTTCGTTAATTTGGACATACCTCTGTGCAACTTGTTTCGTATTAGGACCCGTT : 1052800 149 : ValGluSerThrThrPheProIleAspValGluTyrProPheSerMetAspTyrLe : 167 ||| ! !!!.! !!||||||! !..!!.!|||||||||||| !!:!::!! ! ValLeuProAsnProPheProSerSerAlaGluTyrProPheArgValAsnArgTh 1052799 : GTTCTACCAAATCCTTTTCCCAGCAGTGCAGAGTATCCGTTTCGCGTTAATCGTAC : 1052743 168 : uProValLysIleLeuIleTyrLeuHisGlnLeuLeuLeuIleTyrGlnSerTyrT : 186 !|||:!!!!. !:!!:!!||||||||||||! !!!!:!!! !!:!|||! ! !. rProMetAsnAlaIleValTyrLeuHisGlnSerPheIleSerPheGlnTyrSerA 1052742 : ACCCATGAATGCTATTGTCTACCTGCACCAATCTTTCATAAGCTTTCAGTACAGTG : 1052686 187 : hrGlnValCysSerAsnValPheValGlyLeuLeuLeuTrpPheValSerAlaArg : 204 !!!!.:!!||| !!:!:!!|||! !!.!||||||||||||.!!..!:!!|||||| laHisIleCysValSerIlePheGlyAlaLeuLeuLeuTrpIleThrAlaAlaArg 1052685 : CACACATATGTGTAAGCATTTTCGGAGCTCTTTTACTCTGGATTACGGCTGCGAGA : 1052632 205 : CysAspIleLeuSer : 209 ! ! !! !|||!!! PheHisCysLeuThr 1052631 : TTTCATTGCTTAACT : 1052615 vulgar: CbirOr168 92 209 . KQ414618.1 1052965 1052614 - 205 M 117 351 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1052615 1052965 205 - . gene_id 1 ; sequence CbirOr168 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1052615 1052965 . - . KQ414618.1 exonerate:protein2genome:local exon 1052615 1052965 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1052615 1052965 205 - . alignment_id 1 ; Query CbirOr168 ; Align 1052966 93 351 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr168 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 6 -> 97 Target range: 1039163 -> 1038890 7 : GluLysLeuIleAlaPheLeuLysThrHisLeuPhePheAlaCysCysTrpProLe : 25 |||!:! !|||:!!.!!:!!:!!..! ! ! !|||.!!|||||||||||||| GluArgAlaIleSerLeuValGlnValIleThrAlaPheThrCysCysTrpProLe 1039163 : GAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGCTTTTACCTGCTGTTGGCCTCT : 1039109 26 : uArgSerThrAlaThrArgTyrGluLysThrCysAspMetIlePheArgPhePheS : 44 |! !||||||||||||!:!! ! ! ! ! !! !|||.!.|||! !||| uProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuArgSerPheL 1039108 : TCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGAGATCTTTCC : 1039052 45 : erMetValHisGlyThrValMetIleValSerIleLeuTyrThrIleTyrIleAsn : 62 !:!::!!:!!!.! !|||:!!.!!:!! !!:!:||||||.!!:!::!!:!::!! euLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHisValHis 1039051 : TGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTGCAT : 1038998 63 : ProSerAsnLeuLeuLeuIleMetArgLeuCysCysGlnLeuCysThrThrThrGl : 81 ! !!:!:!! ! ! !:!! !!:! !..!|||! ! ! !.!! ...:: ArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGl 1038997 : CGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCTctcgtgca : 1038941 82 : uValProLeuGlnIleMetCysTyrThrMetGlnTyrAspArgLeuGln : 97 :::: ...||| ... ! !! ! |||||||||!.!!!!||| nIlePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGln 1038940 : aatatttttccaaactttcgttTGCATCGGTCAATACGATCATTTTCAG : 1038891 vulgar: CbirOr168 6 97 . KQ414618.1 1039163 1038890 - 118 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1038891 1039163 118 - . gene_id 2 ; sequence CbirOr168 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1038891 1039163 . - . KQ414618.1 exonerate:protein2genome:local exon 1038891 1039163 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1038891 1039163 118 - . alignment_id 2 ; Query CbirOr168 ; Align 1039164 7 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr168 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 6 -> 97 Target range: 1029996 -> 1029723 7 : GluLysLeuIleAlaPheLeuLysThrHisLeuPhePheAlaCysCysTrpProLe : 25 |||!:! !|||:!!.!!:!!:!!..! ! ! !|||.!!|||||||||||||| GluArgAlaIleSerLeuValGlnValIleThrAlaPheThrCysCysTrpProLe 1029996 : GAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGCTTTTACCTGCTGTTGGCCTCT : 1029942 26 : uArgSerThrAlaThrArgTyrGluLysThrCysAspMetIlePheArgPhePheS : 44 |! !||||||||||||!:!! ! ! ! ! !! !|||.!.|||! !||| uProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuArgSerPheL 1029941 : TCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGAGATCTTTCC : 1029885 45 : erMetValHisGlyThrValMetIleValSerIleLeuTyrThrIleTyrIleAsn : 62 !:!::!!:!!!.! !|||:!!.!!:!! !!:!:||||||.!!:!::!!:!::!! euLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHisValHis 1029884 : TGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTGCAT : 1029831 63 : ProSerAsnLeuLeuLeuIleMetArgLeuCysCysGlnLeuCysThrThrThrGl : 81 ! !!:!:!! ! ! !:!! !!:! !..!|||! ! ! !.!! ...:: ArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGl 1029830 : CGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCctcgtgca : 1029774 82 : uValProLeuGlnIleMetCysTyrThrMetGlnTyrAspArgLeuGln : 97 :::: ...||| !.!. !! !! ! |||||||||!.!!!!||| nIlePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGln 1029773 : aatatttttccagacTTTCGTTTGCATCGGCCAATACGATCATTTTCAG : 1029724 vulgar: CbirOr168 6 97 . KQ414618.1 1029996 1029723 - 118 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1029724 1029996 118 - . gene_id 3 ; sequence CbirOr168 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1029724 1029996 . - . KQ414618.1 exonerate:protein2genome:local exon 1029724 1029996 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1029724 1029996 118 - . alignment_id 3 ; Query CbirOr168 ; Align 1029997 7 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr169 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 319 Query range: 127 -> 342 Target range: 1052830 -> 1051978 128 : IleThrGlyValSerPheIlePheAlaProLeuLeuLeuProGlnProPheProLe : 146 :!! !!.!..!!!!|||:!!!!.!.!|||:!!:!!||||||.!.||||||||| LeuCysAlaThrCysPheValLeuGlyProValValLeuProAsnProPheProSe 1052830 : CTCTGTGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAATCCTTTTCCCAG : 1052776 147 : uGluLeuGluTyrProPheAspIleTyrGln<->ProLeuGlnThrIleIleTyrV : 164 !... !|||||||||||| !:!! !!!:: |||:!!.!..!!|||:!!|||: rSerAlaGluTyrProPheArgValAsnArgThrProMetAsnAlaIleValTyrL 1052775 : CAGTGCAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGTCTACC : 1052719 165 : alHisHisIleIleAlaIlePheGlnSerValThrGlnValGlyAlaAsnThrPhe : 182 !!|||!!. !.!! !! !||||||! ! !.!!!!.:!! !!!.!!:!! !||| euHisGlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerIlePhe 1052718 : TGCACCAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCATTTTC : 1052665 183 : ProAlaLeuLeuLeuTrpPheValAlaAlaArgPheHisIleLeuSerThrArgPh : 201 !|||||||||||||||.!!..!||||||||||||||| !|||!!! !..! ! GlyAlaLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeuGluVa 1052664 : GGAGCTCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTGGAGGT : 1052608 202 : eCysThrValThrAspMetLysGlnLeuLeuLysCysValTyrGluHisAsnIleL : 220 ! ! !:!!..!!!: ! ..!|||:!!! |||||| ! :!!!!. :!!| lGlnGlnSerSerSerIleHisMetLeuIleIleCysValLysLysGlnLeuLeuL 1052607 : TCAACAAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCTACTAC : 1052551 221 : euLeu{Ar} >>>> Target Intron 1 >>>> {g}TyrAlaGluGluVal : 227 || !{||} 65 bp {|}||||||:!!|||||| euArg{Ar}++ ++{g}TyrAlaLysGluVal 1052550 : TGAGG{AG}gt.........................ag{G}TACGCCAAAGAAGTG : 1052465 228 : ThrHisAlaValArgTyrValAlaLeuLeuCysIleThrCysSerThrGlyAlaVa : 246 ..! !!!.! !!||| !:!!!.!||| !..!|||.!! |||! ! !|||:! ValAspGlyPheArgLeuIleValLeuAsnAlaIleAlaMetSerIleLeuAlaLe 1052464 : GTTGACGGTTTTCGGCTTATAGTACTCAACGCTATAGCAATGAGCATTTTGGCTCT : 1052408 247 : lIlePheGlyTyrLeuThrPheMetSer >>>> Target Intron 2 >>>> : 256 !! !.!..!! !:!!|||!!.!!:! ! 62 bp uThrLeuSerSerIleThrLeuIleMet++ + 1052407 : TACTCTAAGTAGTATTACATTAATAATGgt.........................a : 1052318 257 : ArgGlnProValSerValLysPheIlePheLeuMetIleGlyLeuCysGlyPheV : 274 ..! !|||:!!! !|||||| ! !|||:!!! :!!.!!!!! !! !.!!! +GluIleProLeuIleValLysValGlnPheValThrValSerPheThrValLeuA 1052317 : gGAAATACCGTTAATTGTGAAAGTGCAATTCGTAACTGTAAGCTTCACTGTACTCG : 1052262 275 : alGluLeuTyrMetTyrAlaTrpProAlaAspAsnValMetThrMet >>>> Ta : 290 .!|||:!!||||||||||||||| !!|||||| !!:!!! !||| laGluIleTyrMetTyrAlaTrpSerAlaAspTyrMetLysAspMet++ 1052261 : CAGAAATTTATATGTACGCATGGTCAGCTGACTACATGAAAGACATGgt....... : 1052212 291 : rget Intron 3 >>>> SerSerAspIleAlaLeuAlaValTyrAsnSerSer : 301 80 bp |||:!! ! :!!:!!! !::!||||||:!!! !!!! ++SerAlaLysValSerGlnSerValTyrAspLeuThr 1052211 : ..................agAGTGCAAAGGTTTCACAAAGTGTGTATGATTTAACG : 1052101 302 : TrpTyrLysAspAspValAlaMetArgLysValLeuMetHisIleIleArgArgSe : 320 |||||| !.!. ::: |||:::||| :::::::::|||::: !!.! TrpTyrGlyGlnThrLeuGluMetGlnLysAsnValLeuTyrIleLeuValHis-- 1052100 : TGGTACGGACAAACATtggaaatgcagaaaaatgtattatacatattgGTACAC-- : 1052044 321 : rGlnArgProValValValSerValProCysAlaLeuProGlnLeuSerMetThrT : 339 |||..!||||||:!!:!!|||||| !||| !:!!|||:!!||||||:!: !| -GlnGluProValIleLeuSerValSerCysIleValProGluLeuSerLeuArgT 1052043 : -CAAGAACCGGTAATTCTGTCAGTTAGTTGCATCGTGCCGGAGCTTTCTCTTCGTT : 1051990 340 : yrTyrAlaSer : 342 |||||..!||| yrTyrCysSer 1051989 : ATTATTGCTCG : 1051979 vulgar: CbirOr169 127 342 . KQ414618.1 1052830 1051978 - 319 M 29 87 G 0 3 M 65 195 S 0 2 5 0 2 I 0 61 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 34 102 5 0 2 I 0 76 3 0 2 M 30 90 G 1 0 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1051979 1052830 319 - . gene_id 1 ; sequence CbirOr169 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1052544 1052830 . - . KQ414618.1 exonerate:protein2genome:local exon 1052544 1052830 . - . insertions 3 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052542 1052543 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052479 1052543 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052479 1052480 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052379 1052478 . - . KQ414618.1 exonerate:protein2genome:local exon 1052379 1052478 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052377 1052378 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052317 1052378 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1052317 1052318 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052215 1052316 . - . KQ414618.1 exonerate:protein2genome:local exon 1052215 1052316 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052213 1052214 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052135 1052214 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1052135 1052136 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1051979 1052134 . - . KQ414618.1 exonerate:protein2genome:local exon 1051979 1052134 . - . insertions 0 ; deletions 1 KQ414618.1 exonerate:protein2genome:local similarity 1051979 1052830 319 - . alignment_id 1 ; Query CbirOr169 ; Align 1052831 128 87 ; Align 1052741 157 195 ; Align 1052478 223 99 ; Align 1052317 256 102 ; Align 1052135 290 90 ; Align 1052045 321 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr169 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 189 Query range: 255 -> 354 Target range: 1056077 -> 1055717 256 : ArgGlnProValSerValLysPheIlePheLeuMetIleGlyLeuCysGlyPheVa : 274 !.!||||||:!! !:!!||| !:!!!:! !:!::!!! !!!! !!!.! !|| AsnGlnProLeuLeuLeuLysAlaLeuTyrAlaValValValPheSerAlaSerVa 1056077 : AATCAACCATTGCTTTTGAAAGCTTTATACGCGGTCGTAGTATTCAGCGCCAGCGT : 1056023 275 : lGluLeuTyrMetTyrAlaTrpProAlaAspAsnValMetThrMet >>>> Tar : 290 |||||||!:!||||||||||||||||||||||||:!!||| !||| lGluLeuPheMetTyrAlaTrpProAlaAspAsnLeuMetArgMet++ 1056022 : GGAGCTCTTCATGTACGCTTGGCCTGCGGATAATTTGATGCGTATGgt........ : 1055973 291 : get Intron 1 >>>> SerSerAspIleAlaLeuAlaValTyrAsnSerSerT : 302 63 bp |||!!! ! :!!||| !! !:!!||||||!!!..!| ++SerThrLysLeuAlaAlaAspIleTyrAsnThrAspT 1055972 : .................agAGTACGAAGCTTGCGGCAGATATTTACAACACAGATT : 1055876 303 : rpTyrLysAspAspValAlaMetArgLysValLeuMetHisIleIleArgArgSer : 320 ||!:!:!! ! |||:!! !:!!!:!||| !:!! :!!||||||!:!|||||| rpPheGluLysAspIleArgLeuGlnLysLysValTyrTyrIleIleGlnArgSer 1055875 : GGTTCGAAAAGGATATTAGATTGCAAAAAAAGGTATACTATATTATACAAAGGTCT : 1055822 321 : GlnArgProValValValSerValProCysAlaLeuProGlnLeuSerMetThrTy : 339 ||||||! !! !!.!:!! !!:!! ! !! !:!!|||:!!||||||:!! !!|| GlnArgLeuGluAlaIleArgIleAsnGlyIleValProLysLeuSerLeuProTy 1055821 : CAGAGGCTCGAAGCTATTCGAATTAATGGCATAGTTCCAAAACTATCCCTGCCATA : 1055765 340 : rTyrAlaSerTyrIleSerThrValPheSerTyrMetAlaPheIle : 354 |||||||! ! !!!!||| !! !!:!! !.!. !.!.||| rTyrAlaMetValGlyThrThrPheValAlaLeuPheLeuLeuIle 1055764 : CTATGCAATGGTAGGTACTACTTTTGTTGCACTTTTTCTTCTAATC : 1055718 vulgar: CbirOr169 255 354 . KQ414618.1 1056077 1055717 - 189 M 34 102 5 0 2 I 0 59 3 0 2 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1055718 1056077 189 - . gene_id 2 ; sequence CbirOr169 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1055976 1056077 . - . KQ414618.1 exonerate:protein2genome:local exon 1055976 1056077 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1055974 1055975 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1055913 1055975 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1055913 1055914 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1055718 1055912 . - . KQ414618.1 exonerate:protein2genome:local exon 1055718 1055912 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1055718 1056077 189 - . alignment_id 2 ; Query CbirOr169 ; Align 1056078 256 102 ; Align 1055913 290 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr169 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 157 Query range: 127 -> 222 Target range: 1029053 -> 1028765 128 : IleThrGlyValSerPheIlePheAlaProLeuLeuLeuProGlnProPheProLe : 146 :!!|||!.!|||! !.!.:!!.!.!.! !! !:!!:!! !!.!.||||||||| LeuThrAlaValIleMetValLeuGlySerArgIleIleSerAspProPheProTh 1029053 : TTAACAGCAGTTATTATGGTTCTGGGAAGTCGGATTATATCTGATCCTTTTCCAAC : 1028999 147 : uGluLeuGluTyrProPheAspIle<->TyrGlnProLeuGlnThrIleIleTyrV : 164 !.!. !! !||||||||| !:!! !:!:!!||||||::!!:!||||||!:!: rAsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheM 1028998 : CAACGCCGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGTATCATTTTTA : 1028942 165 : alHisHisIleIleAlaIlePheGlnSerValThrGlnValGlyAlaAsnThrPhe : 182 !!|||!!. .!!!.! !.!.|||!!!!.!.!!!!...!.!! !|||..!.!. etHisGlnSerPheValGlyIleGlnCysAlaAlaHisThrSerMetAsnValLeu 1028941 : TGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACACTAGTATGAATGTGCTA : 1028888 183 : ProAlaLeuLeuLeuTrpPheValAlaAlaArgPheHisIleLeuSerThrArgPh : 201 !!|||||||||||| |||!.!||||||||||||.!.||||||! !! !..!.! ThrAlaLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIleLeuMetMetGluLe 1028887 : ACTGCATTGTTATTACTATTTGCTGCAGCTCGTTTCGAGATACTGATGATGGAGCT : 1028831 202 : eCysThrValThrAspMetLysGlnLeuLeuLysCysValTyrGluHisAsnIleL : 220 . ! !.!|||!:!|||!!::!! !|||:!!||||||:!! ! :!!:!!:::|||: uArgAsnValSerAspIleGluThrLeuIleLysCysMetLysLysTyrSerIleV 1028830 : GAGGAATGTCAGTGACATTGAAACACTGATTAAATGTATGAAAAAGTATTCGATCG : 1028774 221 : euLeuArg : 222 !!! !||| alArgArg 1028773 : TACGGAGG : 1028766 vulgar: CbirOr169 127 222 . KQ414618.1 1029053 1028765 - 157 M 27 81 G 0 3 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028766 1029053 157 - . gene_id 3 ; sequence CbirOr169 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028766 1029053 . - . KQ414618.1 exonerate:protein2genome:local exon 1028766 1029053 . - . insertions 3 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028766 1029053 157 - . alignment_id 3 ; Query CbirOr169 ; Align 1029054 128 81 ; Align 1028970 155 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr169 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 147 Query range: 8 -> 106 Target range: 1039163 -> 1038869 9 : AspArgValIleAlaPheLeuArgValTyrLeuAlaLeuAlaCysCysTrpProLe : 27 !!:|||!.!|||:!!.!!:!!!:!||| ! !|||!!!.!!|||||||||||||| GluArgAlaIleSerLeuValGlnValIleThrAlaPheThrCysCysTrpProLe 1039163 : GAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGCTTTTACCTGCTGTTGGCCTCT : 1039109 28 : uProProAspAlaThrLysPheGlnArgLeuCysArgArgIleLeuArgTyrPheC : 46 |||| !! |||||||||! !! ! !||| !!:!|||||||||! !||| uProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuArgSerPheL 1039108 : TCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGAGATCTTTCC : 1039052 47 : ysLeuAlaAsnSerIleThrIleIlePheSerGlyValTrpThrIleSerLysHis : 64 ||| !|||:!!:!!..!:!:.!!.!. !! !:!!!::.!!:!: ! !||| euLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHisValHis 1039051 : TGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTGCAT : 1038998 65 : GlyAspAspAlaPheMetValMetArgValGlyCysGlnMetSerAlaAlaAlaGl : 83 !!:!!|||||| ! ||| !!:!!.!!.!|||! !! ! !||| ...|| ArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGl 1038997 : CGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCTctcgtgca : 1038941 84 : nIleProLeuGlnMetIleLeuPheAlaMetGlnAspGluArgMetGlnValLysM : 102 |||| ...||| ...:::! ! ! ||| !!!!:!.!.!.||||||!:!: nIlePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGlnValArgL 1038940 : aatatttttccaaactttcgttTGCATCGGTCAATACGATCATTTTCAGGTAAGAT : 1038884 103 : etPheMetLeuVal : 106 !:.!!:!:! !:!! euIleLeuArgIle 1038883 : TAATTTTACGCATA : 1038870 vulgar: CbirOr169 8 106 . KQ414618.1 1039163 1038869 - 147 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1038870 1039163 147 - . gene_id 4 ; sequence CbirOr169 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1038870 1039163 . - . KQ414618.1 exonerate:protein2genome:local exon 1038870 1039163 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1038870 1039163 147 - . alignment_id 4 ; Query CbirOr169 ; Align 1039164 9 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr169 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 147 Query range: 8 -> 106 Target range: 1029996 -> 1029702 9 : AspArgValIleAlaPheLeuArgValTyrLeuAlaLeuAlaCysCysTrpProLe : 27 !!:|||!.!|||:!!.!!:!!!:!||| ! !|||!!!.!!|||||||||||||| GluArgAlaIleSerLeuValGlnValIleThrAlaPheThrCysCysTrpProLe 1029996 : GAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGCTTTTACCTGCTGTTGGCCTCT : 1029942 28 : uProProAspAlaThrLysPheGlnArgLeuCysArgArgIleLeuArgTyrPheC : 46 |||| !! |||||||||! !! ! !||| !!:!|||||||||! !||| uProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuArgSerPheL 1029941 : TCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGAGATCTTTCC : 1029885 47 : ysLeuAlaAsnSerIleThrIleIlePheSerGlyValTrpThrIleSerLysHis : 64 ||| !|||:!!:!!..!:!:.!!.!. !! !:!!!::.!!:!: ! !||| euLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHisValHis 1029884 : TGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTGCAT : 1029831 65 : GlyAspAspAlaPheMetValMetArgValGlyCysGlnMetSerAlaAlaAlaGl : 83 !!:!!|||||| ! ||| !!:!!.!!.!|||! !! ! !||| ...|| ArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGl 1029830 : CGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCctcgtgca : 1029774 84 : nIleProLeuGlnMetIleLeuPheAlaMetGlnAspGluArgMetGlnValLysM : 102 |||| ...||| .!!:!!! ! ! ||| !!!!:!.!.!.||||||!:!: nIlePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGlnValArgL 1029773 : aatatttttccagacTTTCGTTTGCATCGGCCAATACGATCATTTTCAGGTAAGAT : 1029717 103 : etPheMetLeuVal : 106 !:.!!:!:! !:!! euIleLeuArgIle 1029716 : TAATTTTACGCATA : 1029703 vulgar: CbirOr169 8 106 . KQ414618.1 1029996 1029702 - 147 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1029703 1029996 147 - . gene_id 5 ; sequence CbirOr169 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1029703 1029996 . - . KQ414618.1 exonerate:protein2genome:local exon 1029703 1029996 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1029703 1029996 147 - . alignment_id 5 ; Query CbirOr169 ; Align 1029997 9 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr162 Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 428 Query range: 0 -> 219 Target range: 57441 -> 58098 1 : MetAspPheArgAsnValAsnSerLeuAsnIleArgLeuAsnMetLeuSerGlyAsnLeu : 20 |||||||||!:!!:!:!!!:!..!||||||!!:! !:!!|||! !! !|||||||||! ! MetAspPheGlnSerLeuSerGlnLeuAsnMetLeuIleAsnLysTyrSerGlyAsnGln 57442 : ATGGATTTTCAAAGCTTGAGTCAGCTAAATATGCTTATAAACAAGTATTCGGGGAATCAA : 57499 21 : LeuProMetThrAspArgGlySerSerPheSerLeuLeuTrpLysLeuTyrGlyValLeu : 40 |||||||||||||||!:! !!!!!.!!!. !!! !:!!! ||| !|||..!:!!:!! LeuProMetThrAspLysLysThrLysLeuProTyrIleLeuLysSerTyrSerIleMet 57500 : CTACCGATGACGGATAAGAAAACGAAATTACCGTATATTTTAAAGAGCTATTCGATTATG : 57559 41 : ValTrpLeuIleGluLeuIleLeuAlaIleCysLeuThrLeuGlySerIleTyrValSer : 60 !|||||||||:!!|||! !! ! !! ! !! !..!!!!||| !.!! !!||| !! SerTrpLeuIleGlnLeuThrTyrLeuThrValCysValPheGlyLeuPheAsnValPro 57560 : TCTTGGCTGATACAGCTAACATACCTGACTGTCTGCGTTTTTGGTCTTTTCAACGTACCC : 57619 61 : ThrGlnLysLeuLeuGluAspSerLeuIleCysPheAlaValGlyGlyGluValIlePhe : 80 ! !.!.||| !|||:!!|||.!! !:!! !.!.!.!|||!.! !|||! !||| ! ArgAspLysAlaLeuLysAspGlyThrValAsnIleValValAlaLeuGluGluIleVal 57620 : AGAGATAAAGCATTGAAGGACGGCACGGTAAATATAGTGGTTGCTTTAGAAGAAATTGTG : 57679 81 : ThrLeuLeuArgLeuTyrSerCysGlnAspLeuValCysGlnLeuIleArgGlnMetAsn : 100 !:!!:!! !|||:!!!:! !!:!! !|||||| ! ::!|||||| !!:!!:!!||| LeuValIleTyrLeuHisAsnArgLysThrLeuValArgArgLeuIleGlyGluLeuAsn 57680 : CTGGTTATTTATTTGCACAACCGTAAAACTTTGGTACGAAGGTTAATTGGAGAACTGAAT : 57739 101 : AspIleLeuCysThrAlaAspGluSerMetLysAsnIleValArgGluThrLeuGluPro : 120 !:!!|||.....!! !:!!|||! !:!:::!|||:!!..!! !.!.|||:!!:!! !! ArgValLeuAlaValAspAsnGluMetLeuArgAsnValThrIleAsnThrValLysSer 57740 : CGTGTTCTCGCGGTAGATAACGAGATGCTACGAAATGTCACGATTAATACCGTGAAATCC : 57799 121 : ValLysValProLeuMetPheTyrIleValAlaSerLeuGlyAlaIleIleGlyTrpTrp : 140 :!!:!! !|||||| ...||| ::!||||||:!!..!|||:!!!!: !||| LeuGluLysProLeuLysIleTyrThrIleAlaSerValAsnAlaValMetLeuTrpThr 57800 : TTAGAGAAAcccttgaaaatttatacgatTGCCAGTGTTAATGCAGTTATGCTTTGGACA : 57859 141 : GlyLeuProPheIleAlaIleLeuAsnLysAsnValTyrCysTyrGluAspTyrArgVal : 160 !.!||||||.!!:!! !:!!!!!...!:!::!! !!:!! !||| !||||||!!!||| AlaLeuProLeuValGlnValPheArgArgSerGluPheTyrTyrThrAspTyrSerVal 57860 : GCTTTGCCACTCGTCCAAGTATTTCGGAGATCTGAGTTCTATTATACGGATTATAGTGTG : 57919 161 : ProValAlaPheSerLysGlnProPheSerPheGlyThrPheValLeuGlyAspLeuPhe : 180 |||!.!|||.!.||||||||||||||||||!:!! !..!|||||| !|||! !:!!.!! ProAlaAlaLeuSerLysGlnProPheSerTyrAspValPheValGlyGlyValValLeu 57920 : CCAGCTGCTCTATCTAAGCAACCGTTTTCATACGACGTTTTCGTCGGCGGCGTTGTTCTT : 57979 181 : ValLeuIleSerThrThrTyrMetPheLeuLysLysValGlyAlaAspValTyrMetIle : 200 !:!!|||.!! !..!|||! :::||||||:::|||..!|||:!!|||! !!!: GlnIleIleGlyGlyValTyrThrValMetLysLysIleGlyValAspIleTyrThrMet 57980 : CAGATTATTGGTGGTGTATACAccgtaatgaaaaaaattggcgTGGATATTTATACGATG : 58039 201 : HisLeuValLeuMetMetThrAlaGlnTyrArgTyrIleAlaValLysMetAlaIle : 219 ||||||:!!|||:!:|||||||||||||||!:!|||||| !! !|||:!:|||!!: HisLeuIleLeuLeuMetThrAlaGlnTyrLysTyrIleArgGlyLysValAlaMet 58040 : CATTTGATTCTTTTAATGACGGCGCAGTACAAATATATTAGGGGCAAAGTTGCGATG : 58098 vulgar: CbirOr162 0 219 . KQ414777.1 57441 58098 + 428 M 219 657 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 57442 58098 428 + . gene_id 1 ; sequence CbirOr162 ; gene_orientation . KQ414777.1 exonerate:protein2genome:local cds 57442 58098 . + . KQ414777.1 exonerate:protein2genome:local exon 57442 58098 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 57442 58098 428 + . alignment_id 1 ; Query CbirOr162 ; Align 57442 1 657 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr162 Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 260 -> 328 Target range: 61699 -> 61980 261 : ThrCysLeuLeuLysArgIleLeuSerThrAsnPheSerIleIleTyrValTyrSerVal : 280 ||| !:!!||||||!:!:!!|||||| !!|||.!!.!!|||:!!|||||| !!!:!||| ThrIleMetLeuLysLysLeuLeuSerProAsnIleGlyIleLeuTyrValAsnAsnVal 61700 : ACTATTATGTTGAAGAAATTACTATCTCCAAACATTGGAATACTTTACGTAAACAACGTT : 61757 281 : PheArgPheCysPheIleGlyIleLeuIleSerThr >>>> Target Intron 1 > : 293 |||||||||||||||:!!.!!:!!:!!|||! !||| 80 bp PheArgPheCysPheLeuSerLeuMetIleIleThr++ 61758 : TTCCGGTTCTGCTTTCTAAGTTTAATGATTATAACGgt...................... : 61798 294 : >>> IleProSerSerThrPheLeuGlnGlyIleSerValThrPheTyrAlaValGlyA : 311 .........||| ::: ::: :::....!.|||.!!:!!|||| ++AsnSerGlyAspAsnPhe---GluLysLeuIleIleValMetTyrThrIleGlyA 61799 : ...agaattccggagataatttt---gaaaaattgataattgtaATGTATACAATTGGTG : 61927 312 : laAlaValGlnLeuTyrValLeuCysSerCysValGlnGlnLeuLeuAsnAla : 328 || !..!|||!!!||||||||||||! !|||:!!|||:!!|||:!!.!.||| laLeuThrGlnPheTyrValLeuCysPheCysIleGlnGluLeuValGluAla 61928 : CTCTAACGCAATTTTATGTATTGTGCTTCTGTATTCAAGAGTTAGTCGAAGCG : 61980 vulgar: CbirOr162 260 328 . KQ414777.1 61699 61980 + 146 M 32 96 5 0 2 I 0 76 3 0 2 M 6 18 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 61700 61980 146 + . gene_id 2 ; sequence CbirOr162 ; gene_orientation + KQ414777.1 exonerate:protein2genome:local cds 61700 61795 . + . KQ414777.1 exonerate:protein2genome:local exon 61700 61795 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local splice5 61796 61797 . + . intron_id 1 ; splice_site "GT" KQ414777.1 exonerate:protein2genome:local intron 61796 61875 . + . intron_id 1 KQ414777.1 exonerate:protein2genome:local splice3 61874 61875 . + . intron_id 0 ; splice_site "ag" KQ414777.1 exonerate:protein2genome:local cds 61876 61980 . + . KQ414777.1 exonerate:protein2genome:local exon 61876 61980 . + . insertions 0 ; deletions 1 KQ414777.1 exonerate:protein2genome:local similarity 61700 61980 146 + . alignment_id 2 ; Query CbirOr162 ; Align 61700 261 96 ; Align 61876 293 18 ; Align 61894 300 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr163 Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 499 Query range: 0 -> 262 Target range: 57441 -> 58233 1 : MetAspPheGlnAsnValAsnProLeuAsnValTrpIleAsnPheIleSerGlyAsnLeu : 20 ||||||||||||!:!:!!!:!! !||||||:!! |||||| !|||||||||! ! MetAspPheGlnSerLeuSerGlnLeuAsnMetLeuIleAsnLysTyrSerGlyAsnGln 57442 : ATGGATTTTCAAAGCTTGAGTCAGCTAAATATGCTTATAAACAAGTATTCGGGGAATCAA : 57499 21 : PheProMetThrAlaAspAspThrSerPheSerValLeuTrpLysIleTyrSerIleLeu : 40 .!.|||||||||! ! ! ! |||!.!!!. !! !:!!! |||! !|||||||||:!! LeuProMetThrAspLysLysThrLysLeuProTyrIleLeuLysSerTyrSerIleMet 57500 : CTACCGATGACGGATAAGAAAACGAAATTACCGTATATTTTAAAGAGCTATTCGATTATG : 57559 41 : LeuTrpLeuLeuGluLeuValGlnValCysMetLeuIleProGlyCysIleLeuValPro : 60 ! !||||||:!!:!!|||..! ! :!! !:!:! !:!! !||| !.!! !|||||| SerTrpLeuIleGlnLeuThrTyrLeuThrValCysValPheGlyLeuPheAsnValPro 57560 : TCTTGGCTGATACAGCTAACATACCTGACTGTCTGCGTTTTTGGTCTTTTCAACGTACCC : 57619 61 : LysGluLysAlaLeuLysAspGlyMetValGlyLeuValValThrPheGluValThrPhe : 80 !:!!!:||||||||||||||||||! !|||..!:!!||||||.!!!!.|||! !! ! ! ArgAspLysAlaLeuLysAspGlyThrValAsnIleValValAlaLeuGluGluIleVal 57620 : AGAGATAAAGCATTGAAGGACGGCACGGTAAATATAGTGGTTGCTTTAGAAGAAATTGTG : 57679 81 : MetValThrArgIleHisThrCysLysArgLeuMetArgGlnLeuIleGlnSerLeuAsn : 100 :!!|||! ! !:!:|||!.! !!|||! !|||:!:|||::!|||||| !..!|||||| LeuValIleTyrLeuHisAsnArgLysThrLeuValArgArgLeuIleGlyGluLeuAsn 57680 : CTGGTTATTTATTTGCACAACCGTAAAACTTTGGTACGAAGGTTAATTGGAGAACTGAAT : 57739 101 : AspIleLeuHisAlaLysAspGluLeuMetArgAsnIleValValAlaThrLeuLysPro : 120 !:!!||| !.! ! :!!|||:!!:!:||||||:!!..!:!! !|||:!!||| !! ArgValLeuAlaValAspAsnGluMetLeuArgAsnValThrIleAsnThrValLysSer 57740 : CGTGTTCTCGCGGTAGATAACGAGATGCTACGAAATGTCACGATTAATACCGTGAAATCC : 57799 121 : MetGluThrProLeuLysPheTyrLeuMetAlaGlyValLeuSerIleIleIleTrpSer : 140 :!:|||! !|||||||||...||| :::|||.!!||| !:!!:!!!!::!!|||!!! LeuGluLysProLeuLysIleTyrThrIleAlaSerValAsnAlaValMetLeuTrpThr 57800 : TTAGAGAAAcccttgaaaatttatacgatTGCCAGTGTTAATGCAGTTATGCTTTGGACA : 57859 141 : SerThrProPheValLeuValTyrGlnLysAspValPhePheTyrValAspPheArgMet : 160 :!! !|||.!!|||! !|||!:!!:!!:!..!! !|||!:!|||..!|||!:!!!!:!! AlaLeuProLeuValGlnValPheArgArgSerGluPheTyrTyrThrAspTyrSerVal 57860 : GCTTTGCCACTCGTCCAAGTATTTCGGAGATCTGAGTTCTATTATACGGATTATAGTGTG : 57919 161 : ProValAlaTyrThrArgGluProPheSerThrThrValPheValIleGlySerLeuVal : 180 |||!.!||| :!!!:!:!!||||||||| ! !||||||||| !||| !:!!:!! ProAlaAlaLeuSerLysGlnProPheSerTyrAspValPheValGlyGlyValValLeu 57920 : CCAGCTGCTCTATCTAAGCAACCGTTTTCATACGACGTTTTCGTCGGCGGCGTTGTTCTT : 57979 181 : ValLeuMetSerSerIleTyrIlePheIleLysLysValSerValAspSerTyrMetMet : 200 !:!!!!:.!!.!!:!!|||! :::||||||:::...||||||! !|||! !||| GlnIleIleGlyGlyValTyrThrValMetLysLysIleGlyValAspIleTyrThrMet 57980 : CAGATTATTGGTGGTGTATACAccgtaatgaaaaaaattggcgTGGATATTTATACGATG : 58039 201 : HisLeuIleLeuMetIleThrAlaGlnTyrArgTyrValAlaLeuLysLeuSerMetIle : 220 ||||||||||||:!:!!:||||||||||||!:!|||:!! ! !|||:!!:!!|||! ! HisLeuIleLeuLeuMetThrAlaGlnTyrLysTyrIleArgGlyLysValAlaMetThr 58040 : CATTTGATTCTTTTAATGACGGCGCAGTACAAATATATTAGGGGCAAAGTTGCGATGACA : 58099 221 : PheGln<-><->AspLysValProArgAspAspGlyAsnSerTyrAsnGluLysLysHis : 238 |||!:! :!!:!!!.! ! !||| !||||||||| !!.!! ! !||| ! PheArgGlnTyrAsnGluAlaPheAspAspPheGlyAsnSerIleThrGlyLeuLysVal 58100 : TTTCGACAGTATAACGAAGCTTTCGATGATTTCGGCAACAGTATTACTGGACTGAAAGTT : 58159 239 : ArgLeuThrMetAspTyrArgAlaGluLysAspIleLysAlaLeuCysArgHisHisAsn : 258 !! ! !! !.!. ! ! !:!!:!!!!:!!:!:!:!! !! !!.!|||:!!.!. SerCysGluLysGlnLysValIleLysGlnGluMetArgSerAlaSerHisHisTyrGlu 58160 : TCATGCGAGAAGCAAAAAGTGATCAAACAGGAAATGAGATCGGCGTCTCATCATTACGAA : 58219 259 : ThrIleValGln : 262 ..!||||||:!! ValIleValLys 58220 : GTTATAGTCAAG : 58233 vulgar: CbirOr163 0 262 . KQ414777.1 57441 58233 + 499 M 222 666 G 0 6 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 57442 58233 499 + . gene_id 1 ; sequence CbirOr163 ; gene_orientation . KQ414777.1 exonerate:protein2genome:local cds 57442 58233 . + . KQ414777.1 exonerate:protein2genome:local exon 57442 58233 . + . insertions 6 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 57442 58233 499 + . alignment_id 1 ; Query CbirOr163 ; Align 57442 1 666 ; Align 58114 223 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr163 Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 327 -> 384 Target range: 62088 -> 62259 328 : LeuLeuAspAlaThrIleGluIleThrAspLysAlaPheHisGluGluTrpTyrArgTyr : 347 !!!|||:!! !!:!! !...:!!.!!||| ! !.! ! ||||||..!|||||| !! ! PheLeuAsn***SerThrSerValAlaAspAspValValHisGluArgTrpTyrPheCys 62089 : TTCTTGAATTAGAGCACATCTGTAGCGGACGATGTAGTACATGAACGATGGTATTTCTGT : 62146 348 : GlyGlyLeuIleLysArgThrPheIleMetIleIleMetAlaAsnAsnLeuGluCysLys : 367 ! !! !|||:!!:!!|||..!.!! !|||||||||:!:|||:!!!!.:!!||||||!:! AspValLeuValGlnArgValIleAlaMetIleIleLeuAlaAspLysMetGluCysArg 62147 : GATGTACTAGTACAACGAGTAATTGCTATGATTATTTTAGCTGATAAAATGGAATGTAGA : 62206 368 : LeuSerThrPheGlyLysPheAsnLeuSerLeuProSerPheMetThrIle : 384 ||||||!:!||| !!!!..!.:!!|||!!!|||||||||||||||:!!:!: LeuSerSerPheArgAsnIleAspLeuThrLeuProSerPheMetSerVal 62207 : CTGTCCAGTTTTCGGAACATAGATTTAACTTTACCATCTTTTATGTCGGTa : 62259 vulgar: CbirOr163 327 384 . KQ414777.1 62088 62259 + 129 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 62089 62259 129 + . gene_id 2 ; sequence CbirOr163 ; gene_orientation . KQ414777.1 exonerate:protein2genome:local cds 62089 62259 . + . KQ414777.1 exonerate:protein2genome:local exon 62089 62259 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 62089 62259 129 + . alignment_id 2 ; Query CbirOr163 ; Align 62089 328 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr163 Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 261 -> 296 Target range: 61693 -> 61798 262 : GlnMetThrLeuMetLeuArgAsnLeuLeuSerLeuAsnPheSerLeuIleTyrValAsn : 281 :::||||||:!!||||||!:!!!.|||||||||! !|||.!!.!!:!!:!!||||||||| ArgMetThrIleMetLeuLysLysLeuLeuSerProAsnIleGlyIleLeuTyrValAsn 61694 : aggaTGACTATTATGTTGAAGAAATTACTATCTCCAAACATTGGAATACTTTACGTAAAC : 61751 282 : SerIlePheArgPheCysGlyIleAlaIleMetValPheAlaIle : 296 !:!:!!|||||||||||| !:!!::!:!!|||:!!.!..!!:!! AsnValPheArgPheCysPheLeuSerLeuMetIleIleThrVal 61752 : AACGTTTTCCGGTTCTGCTTTCTAAGTTTAATGATTATAACGGTA : 61798 vulgar: CbirOr163 261 296 . KQ414777.1 61693 61798 + 103 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 61694 61798 103 + . gene_id 3 ; sequence CbirOr163 ; gene_orientation . KQ414777.1 exonerate:protein2genome:local cds 61694 61798 . + . KQ414777.1 exonerate:protein2genome:local exon 61694 61798 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 61694 61798 103 + . alignment_id 3 ; Query CbirOr163 ; Align 61694 262 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr164 Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 507 Query range: 0 -> 222 Target range: 57441 -> 58107 1 : MetAspPheGlnSerValAsnProLeuAsnValArgLeuAsnLeuIleSerGlyAsnLeu : 20 |||||||||||||||:!!!:!! !||||||:!!! !:!!||| ! !|||||||||! ! MetAspPheGlnSerLeuSerGlnLeuAsnMetLeuIleAsnLysTyrSerGlyAsnGln 57442 : ATGGATTTTCAAAGCTTGAGTCAGCTAAATATGCTTATAAACAAGTATTCGGGGAATCAA : 57499 21 : LeuProMetThrAlaAspGlyThrValPheSerThrPheTrpLysIleHisSerValPhe : 40 ||||||||||||! ! ! !||| !!!. !! !.!!! |||! !:!!|||:!!.!. LeuProMetThrAspLysLysThrLysLeuProTyrIleLeuLysSerTyrSerIleMet 57500 : CTACCGATGACGGATAAGAAAACGAAATTACCGTATATTTTAAAGAGCTATTCGATTATG : 57559 41 : ValTrpLeuLeuThrAlaValHisThrSerValLeuIleTyrGlyCysThrLeuValPro : 60 !||||||:!! ! !..!:!! !!!!|||! !:!!!:!||| ! ! !|||||| SerTrpLeuIleGlnLeuThrTyrLeuThrValCysValPheGlyLeuPheAsnValPro 57560 : TCTTGGCTGATACAGCTAACATACCTGACTGTCTGCGTTTTTGGTCTTTTCAACGTACCC : 57619 61 : ArgGluLysAlaLeuLysAspGlySerValAlaLeuValIleThrValGluValIlePhe : 80 |||!!:||||||||||||||||||!!!||| !:!!|||:!!.!!:!!|||! !||| ! ArgAspLysAlaLeuLysAspGlyThrValAsnIleValValAlaLeuGluGluIleVal 57620 : AGAGATAAAGCATTGAAGGACGGCACGGTAAATATAGTGGTTGCTTTAGAAGAAATTGTG : 57679 81 : MetValMetGlnIleHisAlaArgLysArgLeuValLeuGlnLeuIleLysLysMetAsn : 100 :!!|||!!: ! :!:||| !||||||! !||||||! !::!|||||| !:!!:!!||| LeuValIleTyrLeuHisAsnArgLysThrLeuValArgArgLeuIleGlyGluLeuAsn 57680 : CTGGTTATTTATTTGCACAACCGTAAAACTTTGGTACGAAGGTTAATTGGAGAACTGAAT : 57739 101 : GluIleLeuCysLeuLysAsnGluMetIleLysAspIleValIleAlaLeuLeuLysSer : 120 ...:!!|||...:!! ! |||||||||:!!::!:!!:!!..!||| ! !:!!|||||| ArgValLeuAlaValAspAsnGluMetLeuArgAsnValThrIleAsnThrValLysSer 57740 : CGTGTTCTCGCGGTAGATAACGAGATGCTACGAAATGTCACGATTAATACCGTGAAATCC : 57799 121 : MetLysIleProLeuLysPheTyrTrpMetAlaGlyValValSerIleIleValTrpCys : 140 :!::!!! !|||||||||...||| :::|||.!!||| !:!!:!!!!::!!||| LeuGluLysProLeuLysIleTyrThrIleAlaSerValAsnAlaValMetLeuTrpThr 57800 : TTAGAGAAAcccttgaaaatttatacgatTGCCAGTGTTAATGCAGTTATGCTTTGGACA : 57859 141 : SerAlaProPheValValIleLeuGluArgAsnTyrPhePheTyrValAspTyrArgMet : 160 :!! !|||.!!||| !:!!!!!..!|||::! ! |||!:!|||..!||||||!!!:!! AlaLeuProLeuValGlnValPheArgArgSerGluPheTyrTyrThrAspTyrSerVal 57860 : GCTTTGCCACTCGTCCAAGTATTTCGGAGATCTGAGTTCTATTATACGGATTATAGTGTG : 57919 161 : ProValPheTyrAlaGluGluProPheSerIleSerIlePheValLeuGlyThrLeuIle : 180 |||!.! ! :!!:!!:!!||||||||| !..!:!!|||||| !|||..!:!!:!! ProAlaAlaLeuSerLysGlnProPheSerTyrAspValPheValGlyGlyValValLeu 57920 : CCAGCTGCTCTATCTAAGCAACCGTTTTCATACGACGTTTTCGTCGGCGGCGTTGTTCTT : 57979 181 : LeuMetValSerSerMetTyrThrPheThrLysLysValSerValAspSerTyrMetIle : 200 ! !!!::!!.!!.!!:!:|||||| ||||||:::...||||||! !|||! !!!: GlnIleIleGlyGlyValTyrThrValMetLysLysIleGlyValAspIleTyrThrMet 57980 : CAGATTATTGGTGGTGTATACAccgtaatgaaaaaaattggcgTGGATATTTATACGATG : 58039 201 : HisMetIleLeuLeuValThrAlaGlnTyrLysTyrIleAlaSerLysLeuSerMetIle : 220 |||:!!|||||||||:!!||||||||||||||||||||| !.!!|||:!!:!!|||! ! HisLeuIleLeuLeuMetThrAlaGlnTyrLysTyrIleArgGlyLysValAlaMetThr 58040 : CATTTGATTCTTTTAATGACGGCGCAGTACAAATATATTAGGGGCAAAGTTGCGATGACA : 58099 221 : PheGln : 222 |||!:! PheArg 58100 : TTTCGA : 58107 vulgar: CbirOr164 0 222 . KQ414777.1 57441 58107 + 507 M 222 666 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 57442 58107 507 + . gene_id 1 ; sequence CbirOr164 ; gene_orientation . KQ414777.1 exonerate:protein2genome:local cds 57442 58107 . + . KQ414777.1 exonerate:protein2genome:local exon 57442 58107 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 57442 58107 507 + . alignment_id 1 ; Query CbirOr164 ; Align 57442 1 666 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr164 Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 256 -> 294 Target range: 61693 -> 61807 257 : GlnIleIleLeuLeuLeuLysThrLeuLeuSerLeuAsnLeuSerLeuIleTyrValAsn : 276 ::::!:! !:!!:!!||||||! !|||||||||! !|||:!!.!!:!!:!!||||||||| ArgMetThrIleMetLeuLysLysLeuLeuSerProAsnIleGlyIleLeuTyrValAsn 61694 : aggaTGACTATTATGTTGAAGAAATTACTATCTCCAAACATTGGAATACTTTACGTAAAC : 61751 277 : SerValPheArgPheCysPheIleGlyValMetIleLeuSerIleSerSerThr : 294 !:!||||||||||||||||||:!!.!!:!!||||||:!!!!!:!!! ! !||| AsnValPheArgPheCysPheLeuSerLeuMetIleIleThrValTyrLeuThr 61752 : AACGTTTTCCGGTTCTGCTTTCTAAGTTTAATGATTATAACGGTATACCTTACG : 61807 vulgar: CbirOr164 256 294 . KQ414777.1 61693 61807 + 107 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 61694 61807 107 + . gene_id 2 ; sequence CbirOr164 ; gene_orientation . KQ414777.1 exonerate:protein2genome:local cds 61694 61807 . + . KQ414777.1 exonerate:protein2genome:local exon 61694 61807 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 61694 61807 107 + . alignment_id 2 ; Query CbirOr164 ; Align 61694 257 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr166CTE Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 503 Query range: 0 -> 230 Target range: 57441 -> 58131 1 : MetAspPheGlnAsnValAsnProLeuAsnValTrpIleAsnPheIleSerGlyAsnLeu : 20 ||||||||||||!:!:!!!:!! !||||||:!! |||||| !|||||||||! ! MetAspPheGlnSerLeuSerGlnLeuAsnMetLeuIleAsnLysTyrSerGlyAsnGln 57442 : ATGGATTTTCAAAGCTTGAGTCAGCTAAATATGCTTATAAACAAGTATTCGGGGAATCAA : 57499 21 : PheProMetThrAlaAspAspThrSerPheProValLeuTrpLysIleTyrSerIleLeu : 40 .!.|||||||||! ! ! ! |||!.!!!.||| !:!!! |||! !|||||||||:!! LeuProMetThrAspLysLysThrLysLeuProTyrIleLeuLysSerTyrSerIleMet 57500 : CTACCGATGACGGATAAGAAAACGAAATTACCGTATATTTTAAAGAGCTATTCGATTATG : 57559 41 : LeuTrpLeuLeuGluLeuValGlnMetCysValLeuIleArgGlyCysIleLeuValPro : 60 ! !||||||:!!:!!|||..! ! :!! !|||! !:!! !||| !.!! !|||||| SerTrpLeuIleGlnLeuThrTyrLeuThrValCysValPheGlyLeuPheAsnValPro 57560 : TCTTGGCTGATACAGCTAACATACCTGACTGTCTGCGTTTTTGGTCTTTTCAACGTACCC : 57619 61 : LysGluArgAlaLeuLysAspGlyLeuIleGlyLeuAlaIleThrIleGluValValPhe : 80 !:!!!:!:!||||||||||||||| !:!!..!:!!!.!:!!.!!:!!|||! !:!! ! ArgAspLysAlaLeuLysAspGlyThrValAsnIleValValAlaLeuGluGluIleVal 57620 : AGAGATAAAGCATTGAAGGACGGCACGGTAAATATAGTGGTTGCTTTAGAAGAAATTGTG : 57679 81 : IleValValArgIleGlnThrArgArgGlyLeuIleGlnGlnLeuIleGlnAsnLeuAsn : 100 :!:|||:!! !:!:!!.!.!|||!:! !|||:!!!:!::!|||||| !.!.|||||| LeuValIleTyrLeuHisAsnArgLysThrLeuValArgArgLeuIleGlyGluLeuAsn 57680 : CTGGTTATTTATTTGCACAACCGTAAAACTTTGGTACGAAGGTTAATTGGAGAACTGAAT : 57739 101 : AspIleLeuArgThrLysAspGluIleMetArgAsnIleValIleGlyIlePheLysPro : 120 !:!!||| !..! ! :!!|||!!::!:||||||:!!..!|||..!! ! ! ||| !! ArgValLeuAlaValAspAsnGluMetLeuArgAsnValThrIleAsnThrValLysSer 57740 : CGTGTTCTCGCGGTAGATAACGAGATGCTACGAAATGTCACGATTAATACCGTGAAATCC : 57799 121 : IleLysAlaProPheLysPheTyrLeuIleGlyGlyThrAlaSerValPheMetTrpThr : 140 :!!:!! !|||...|||...||| |||!.!.!!..! !:!!|||.!.:!:|||||| LeuGluLysProLeuLysIleTyrThrIleAlaSerValAsnAlaValMetLeuTrpThr 57800 : TTAGAGAAAcccttgaaaatttatacgatTGCCAGTGTTAATGCAGTTATGCTTTGGACA : 57859 141 : ValValProPheSerLeuValPheHisArgAsnValPhePheTyrIleAspTyrArgMet : 160 !.!:!!|||.!! !! !||||||!..|||::!! !|||!:!|||! ||||||!!!:!! AlaLeuProLeuValGlnValPheArgArgSerGluPheTyrTyrThrAspTyrSerVal 57860 : GCTTTGCCACTCGTCCAAGTATTTCGGAGATCTGAGTTCTATTATACGGATTATAGTGTG : 57919 161 : ProValIlePheSerLysGluProPheSerIleThrThrPheValAlaGlySerLeuLeu : 180 |||!.! !.!.||||||:!!||||||||| ! !..!||||||!.!||| !:!!||| ProAlaAlaLeuSerLysGlnProPheSerTyrAspValPheValGlyGlyValValLeu 57920 : CCAGCTGCTCTATCTAAGCAACCGTTTTCATACGACGTTTTCGTCGGCGGCGTTGTTCTT : 57979 181 : ValMetThrSerSerValTyrIlePheIleLysLysValSerValAspSerTyrMetThr : 200 !!!:! !.!!.!!||||||! :::||||||:::...||||||! !|||! !! ! GlnIleIleGlyGlyValTyrThrValMetLysLysIleGlyValAspIleTyrThrMet 57980 : CAGATTATTGGTGGTGTATACAccgtaatgaaaaaaattggcgTGGATATTTATACGATG : 58039 201 : HisLeuIleLeuLeuIleThrAlaGlnTyrLysTyrThrAlaLeuLysLeuAlaMetIle : 220 |||||||||||||||!!:||||||||||||||||||! ! ! !|||:!!||||||! ! HisLeuIleLeuLeuMetThrAlaGlnTyrLysTyrIleArgGlyLysValAlaMetThr 58040 : CATTTGATTCTTTTAATGACGGCGCAGTACAAATATATTAGGGGCAAAGTTGCGATGACA : 58099 221 : PheGlnGlyAlaGlnAsnAsnCysAspAsp : 230 |||!:! ! !.!..!. !! !|||||| PheArgGlnTyrAsnGluAlaPheAspAsp 58100 : TTTCGACAGTATAACGAAGCTTTCGATGAT : 58131 vulgar: CbirOr166CTE 0 230 . KQ414777.1 57441 58131 + 503 M 230 690 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 57442 58131 503 + . gene_id 1 ; sequence CbirOr166CTE ; gene_orientation . KQ414777.1 exonerate:protein2genome:local cds 57442 58131 . + . KQ414777.1 exonerate:protein2genome:local exon 57442 58131 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 57442 58131 503 + . alignment_id 1 ; Query CbirOr166CTE ; Align 57442 1 690 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr166CTE Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 258 -> 292 Target range: 61693 -> 61795 259 : HisMetThrPheLeuLeuArgGluLeuLeuSerSerAsnLeuSerIleMetTyrLeuAsn : 278 ...||||||.!!:!!|||!:!:!!||||||||| !!|||:!!.!!|||:!:|||:!!||| ArgMetThrIleMetLeuLysLysLeuLeuSerProAsnIleGlyIleLeuTyrValAsn 61694 : aggaTGACTATTATGTTGAAGAAATTACTATCTCCAAACATTGGAATACTTTACGTAAAC : 61751 279 : AsnValPheArgPheCysCysIleValIleMetValIleSer : 292 ||||||||||||||||||! !:!! !:!!|||:!!|||!!! AsnValPheArgPheCysPheLeuSerLeuMetIleIleThr 61752 : AACGTTTTCCGGTTCTGCTTTCTAAGTTTAATGATTATAACG : 61795 vulgar: CbirOr166CTE 258 292 . KQ414777.1 61693 61795 + 107 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 61694 61795 107 + . gene_id 2 ; sequence CbirOr166CTE ; gene_orientation . KQ414777.1 exonerate:protein2genome:local cds 61694 61795 . + . KQ414777.1 exonerate:protein2genome:local exon 61694 61795 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 61694 61795 107 + . alignment_id 2 ; Query CbirOr166CTE ; Align 61694 259 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr167 Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 478 Query range: 0 -> 229 Target range: 57441 -> 58128 1 : MetAspPheGlnAsnValAsnSerLeuAsnValArgLeuAsnMetPheSerGlyAsnLeu : 20 ||||||||||||!:!:!!!:!..!||||||:!!! !:!!|||! !!:!|||||||||! ! MetAspPheGlnSerLeuSerGlnLeuAsnMetLeuIleAsnLysTyrSerGlyAsnGln 57442 : ATGGATTTTCAAAGCTTGAGTCAGCTAAATATGCTTATAAACAAGTATTCGGGGAATCAA : 57499 21 : LeuProMetThrSerAspAspSerLeuPheProIleProTrpArgIleTyrSerValIle : 40 ||||||||||||..! ! ! !!! !!!.||| ! !! !:!! !||||||:!!!!: LeuProMetThrAspLysLysThrLysLeuProTyrIleLeuLysSerTyrSerIleMet 57500 : CTACCGATGACGGATAAGAAAACGAAATTACCGTATATTTTAAAGAGCTATTCGATTATG : 57559 41 : IleTrpLeuIleGluMetIleTyrIleCysGlyMetThrLeuAlaLeuIleLeuIlePro : 60 !|||||||||:!!:!:! !|||:!: !! ! ..!!!!!.!|||.!! !:!!||| SerTrpLeuIleGlnLeuThrTyrLeuThrValCysValPheGlyLeuPheAsnValPro 57560 : TCTTGGCTGATACAGCTAACATACCTGACTGTCTGCGTTTTTGGTCTTTTCAACGTACCC : 57619 61 : LysGluValLeuGlnAspGlyGlyThrMetGlyPheLeuValSerIleGluValPheVal : 80 !:!!!: ! ! ! ! ! !||||||:!:..!.!.:!!|||:!!:!!|||! !.!!||| ArgAspLysAlaLeuLysAspGlyThrValAsnIleValValAlaLeuGluGluIleVal 57620 : AGAGATAAAGCATTGAAGGACGGCACGGTAAATATAGTGGTTGCTTTAGAAGAAATTGTG : 57679 81 : LeuMetMetArgMetAsnSerArgArgAspLeuIleSerGlnLeuIleLysAspLeuAsn : 100 |||:!:!!: !:!!:!!!:!|||!:! !|||:!! !!::!|||||| !!!:|||||| LeuValIleTyrLeuHisAsnArgLysThrLeuValArgArgLeuIleGlyGluLeuAsn 57680 : CTGGTTATTTATTTGCACAACCGTAAAACTTTGGTACGAAGGTTAATTGGAGAACTGAAT : 57739 101 : GlyMetLeuArgSerGluAspGluThrMetLysAsnIleValLeuSerIleLeuLysPro : 120 !!:!:||| ! !!!::!!|||! !:!:::!|||:!!..!:!!!:!! !:!!||| !! ArgValLeuAlaValAspAsnGluMetLeuArgAsnValThrIleAsnThrValLysSer 57740 : CGTGTTCTCGCGGTAGATAACGAGATGCTACGAAATGTCACGATTAATACCGTGAAATCC : 57799 121 : IleAsnThrProLeuGluPheTyrTrpIleAlaGlyThrSerSerLeuMetIleTrpSer : 140 :!!.!.! !||||||:::...||| ||||||.!!..!!:!:!!:!!|||:!!|||!!! LeuGluLysProLeuLysIleTyrThrIleAlaSerValAsnAlaValMetLeuTrpThr 57800 : TTAGAGAAAcccttgaaaatttatacgatTGCCAGTGTTAATGCAGTTATGCTTTGGACA : 57859 141 : TyrIleProLeuValValLeuSerLysLysThrTyrPheSerTyrSerAspPheArgVal : 160 !:!:||||||||| !:!!! !::!!:!:!! ! |||! !|||!!!|||!:!!!!||| AlaLeuProLeuValGlnValPheArgArgSerGluPheTyrTyrThrAspTyrSerVal 57860 : GCTTTGCCACTCGTCCAAGTATTTCGGAGATCTGAGTTCTATTATACGGATTATAGTGTG : 57919 161 : ProIleValLeuThrLysGlnProPheThrValGluIlePheValLeuGlyThrIleLeu : 180 ||| !!.!|||:!!||||||||||||:!! !!!::!!|||||| !|||..!:!!||| ProAlaAlaLeuSerLysGlnProPheSerTyrAspValPheValGlyGlyValValLeu 57920 : CCAGCTGCTCTATCTAAGCAACCGTTTTCATACGACGTTTTCGTCGGCGGCGTTGTTCTT : 57979 181 : ValPheIleGlyAsnLeuTyrLeuPheThrLysLysValAlaLeuAspValTyrMetIle : 200 !.!!||||||..!:!!||| ||||||:::...:!!|||:!!|||! !!!: GlnIleIleGlyGlyValTyrThrValMetLysLysIleGlyValAspIleTyrThrMet 57980 : CAGATTATTGGTGGTGTATACAccgtaatgaaaaaaattggcgTGGATATTTATACGATG : 58039 201 : AsnPheValLeuLeuMetThrAlaGlnTyrHisTyrIleAlaThrLysLeuAlaMetIle : 220 :!!!!.:!!||||||||||||||||||||| ! |||||| ! !|||:!!||||||! ! HisLeuIleLeuLeuMetThrAlaGlnTyrLysTyrIleArgGlyLysValAlaMetThr 58040 : CATTTGATTCTTTTAATGACGGCGCAGTACAAATATATTAGGGGCAAAGTTGCGATGACA : 58099 221 : PheArgAspAlaGlnAspThrAspAsp : 229 ||||||.!. !.!.!!:.!! !||| PheArgGlnTyrAsnGluAlaPheAsp 58100 : TTTCGACAGTATAACGAAGCTTTCGAT : 58128 vulgar: CbirOr167 0 229 . KQ414777.1 57441 58128 + 478 M 229 687 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 57442 58128 478 + . gene_id 1 ; sequence CbirOr167 ; gene_orientation . KQ414777.1 exonerate:protein2genome:local cds 57442 58128 . + . KQ414777.1 exonerate:protein2genome:local exon 57442 58128 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 57442 58128 478 + . alignment_id 1 ; Query CbirOr167 ; Align 57442 1 687 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr167 Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 259 -> 309 Target range: 61696 -> 61846 260 : IleThrSerMetLeuLysGluLeuLeuSerSerAsnMetSerLeuMetTyrLeuSerAsn : 279 :!:|||! !|||||||||:!!||||||||| !!|||!!:.!!:!!:!:|||:!!!:!||| MetThrIleMetLeuLysLysLeuLeuSerProAsnIleGlyIleLeuTyrValAsnAsn 61697 : aTGACTATTATGTTGAAGAAATTACTATCTCCAAACATTGGAATACTTTACGTAAACAAC : 61754 280 : ValPheArgPheCysPheLeuGlyIleMetLeuIleSerAlaIleLeuSerSerAsnLeu : 299 |||||||||||||||||||||.!!:!!|||:!!|||!!!!.! !|||!!!! ! ! ||| ValPheArgPheCysPheLeuSerLeuMetIleIleThrValTyrLeuThrPhe***Leu 61755 : GTTTTCCGGTTCTGCTTTCTAAGTTTAATGATTATAACGGTATACCTTACGTTTTAGCTT : 61814 300 : PheAspThrPheMetIleSerMetPheIle : 309 .!!:!!..! .!.:!: !:!!|||||| LeuAsnValGluPheLeuValLeuPheIle 61815 : CTTAATGTAGAATTTTTGGTTTTGTTCATA : 61846 vulgar: CbirOr167 259 309 . KQ414777.1 61696 61846 + 122 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 61697 61846 122 + . gene_id 2 ; sequence CbirOr167 ; gene_orientation . KQ414777.1 exonerate:protein2genome:local cds 61697 61846 . + . KQ414777.1 exonerate:protein2genome:local exon 61697 61846 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 61697 61846 122 + . alignment_id 2 ; Query CbirOr167 ; Align 61697 260 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr165 Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 348 Query range: 0 -> 220 Target range: 57441 -> 58107 1 : MetAspPheGluAsnValAsnSerMetAsnArgGlnLeuAsnLeuIleSerGlyAsnLeu : 20 |||||||||:!!!:!:!!!:!..!:!:|||! !! :!!||| ! !|||||||||! ! MetAspPheGlnSerLeuSerGlnLeuAsnMetLeuIleAsnLysTyrSerGlyAsnGln 57442 : ATGGATTTTCAAAGCTTGAGTCAGCTAAATATGCTTATAAACAAGTATTCGGGGAATCAA : 57499 21 : PheProMetThrAlaAsnGlyPheThrIleGlyTrp<-><->ArgIleTyrSerIleAla : 38 .!.|||||||||! !!!. ! ! !:!! !!:: !:!! !||||||||| ! LeuProMetThrAspLysLysThrLysLeuProTyrIleLeuLysSerTyrSerIleMet 57500 : CTACCGATGACGGATAAGAAAACGAAATTACCGTATATTTTAAAGAGCTATTCGATTATG : 57559 39 : ValTrpLeuLeuMetThrValGluCysIleAlaPhePheSerGlyCysAlaMetValPro : 58 !||||||:!!..! !..! ! ! !!.!! ! !!! !||| ! !! |||||| SerTrpLeuIleGlnLeuThrTyrLeuThrValCysValPheGlyLeuPheAsnValPro 57560 : TCTTGGCTGATACAGCTAACATACCTGACTGTCTGCGTTTTTGGTCTTTTCAACGTACCC : 57619 59 : LysGluLysAsnIleAsnAsnGlyMetThrValMetLeuPheAsnValGluValPheSer : 78 !:!!!:||| :!:!!.:!!|||! !..! !!!::!! !! !:!!|||! !.!! ! ArgAspLysAlaLeuLysAspGlyThrValAsnIleValValAlaLeuGluGluIleVal 57620 : AGAGATAAAGCATTGAAGGACGGCACGGTAAATATAGTGGTTGCTTTAGAAGAAATTGTG : 57679 79 : LeuIleThrArgIleHisValLysArgGlyLeuIleMetGlnPheIleArgGlyMetAsn : 98 |||:!!! ! !:!:||| !:::!:! !|||:!! ::!!!.||| !!! !:!!||| LeuValIleTyrLeuHisAsnArgLysThrLeuValArgArgLeuIleGlyGluLeuAsn 57680 : CTGGTTATTTATTTGCACAACCGTAAAACTTTGGTACGAAGGTTAATTGGAGAACTGAAT : 57739 99 : AspSerLeuArgThrArgAspLysIleMetLysArgIleValMetLysValValArgGln : 118 ! !||| !..! !:!!:!!!!::!:::!!.!:!!..!!!:!!...!|||!:!... ArgValLeuAlaValAspAsnGluMetLeuArgAsnValThrIleAsnThrValLysSer 57740 : CGTGTTCTCGCGGTAGATAACGAGATGCTACGAAATGTCACGATTAATACCGTGAAATCC : 57799 119 : MetGlnThrProIleLysPheTyrLeuLeuIleGlyGlnLeuThrMetThrIleTrpIle : 138 :!::!!! !|||:::|||...||| ::! !.!! !.!!:!:! !:!!|||! ! LeuGluLysProLeuLysIleTyrThrIleAlaSerValAsnAlaValMetLeuTrpThr 57800 : TTAGAGAAAcccttgaaaatttatacgatTGCCAGTGTTAATGCAGTTATGCTTTGGACA : 57859 139 : LeuLeuProLeuGlyGluIleGlyLysLysSerPhePheSerTyrValAspTyrLysIle : 158 !|||||||||! !:!!:!! !::!!:!||| |||! !|||..!||||||!..:!: AlaLeuProLeuValGlnValPheArgArgSerGluPheTyrTyrThrAspTyrSerVal 57860 : GCTTTGCCACTCGTCCAAGTATTTCGGAGATCTGAGTTCTATTATACGGATTATAGTGTG : 57919 159 : ProAsnAlaIleSerLysGlnProPheSerAlaMetThrPheValLeuGlyIleMetLeu : 178 ||| !|||:!!|||||||||||||||||| ! ..!|||||| !|||:!!:!:||| ProAlaAlaLeuSerLysGlnProPheSerTyrAspValPheValGlyGlyValValLeu 57920 : CCAGCTGCTCTATCTAAGCAACCGTTTTCATACGACGTTTTCGTCGGCGGCGTTGTTCTT : 57979 179 : ThrLeuPheAlaAspValTyrLeuLeuThrLysLysLeuSerLeuAspSerTyrValVal : 198 !:!!.!!!.!! !|||||| ::: ||||||:::...:!!|||! !|||..!:!! GlnIleIleGlyGlyValTyrThrValMetLysLysIleGlyValAspIleTyrThrMet 57980 : CAGATTATTGGTGGTGTATACAccgtaatgaaaaaaattggcgTGGATATTTATACGATG : 58039 199 : HisMetValGlnLeuMetThrAlaGlnTyrGlnTyrIleAlaLeuLysLeuAlaGluMet : 218 |||:!!:!!! ||||||||||||||||||:!!|||||| ! !|||:!!||| !! HisLeuIleLeuLeuMetThrAlaGlnTyrLysTyrIleArgGlyLysValAlaMetThr 58040 : CATTTGATTCTTTTAATGACGGCGCAGTACAAATATATTAGGGGCAAAGTTGCGATGACA : 58099 219 : PheGln : 220 |||!:! PheArg 58100 : TTTCGA : 58107 vulgar: CbirOr165 0 220 . KQ414777.1 57441 58107 + 348 M 32 96 G 0 6 M 188 564 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 57442 58107 348 + . gene_id 1 ; sequence CbirOr165 ; gene_orientation . KQ414777.1 exonerate:protein2genome:local cds 57442 58107 . + . KQ414777.1 exonerate:protein2genome:local exon 57442 58107 . + . insertions 6 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 57442 58107 348 + . alignment_id 1 ; Query CbirOr165 ; Align 57442 1 96 ; Align 57544 33 564 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr165 Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 220 Query range: 257 -> 380 Target range: 61693 -> 62259 258 : GlnMetSerPheIleLeuLysGluLeuLeuSerPheHisValSerValThrTyrIleCys : 277 :::|||!!!.!!!!:||||||:!!||||||||| :!!:!!.!!:!! !|||:!! ! ArgMetThrIleMetLeuLysLysLeuLeuSerProAsnIleGlyIleLeuTyrValAsn 61694 : aggaTGACTATTATGTTGAAGAAATTACTATCTCCAAACATTGGAATACTTTACGTAAAC : 61751 278 : AsnIleLeuArgTyrCysCysIleGlyValMetAlaLeuAspThr >>>> Target I : 293 |||:!!!!!|||!:!|||! !:!!.!!:!!||| !:!! ||| 80 AsnValPheArgPheCysPheLeuSerLeuMetIleIle---Thr++ 61752 : AACGTTTTCCGGTTCTGCTTTCTAAGTTTAATGATTATA---ACGgt............. : 61798 294 : ntron 1 >>>> IleSerArgProLeuTyrGluTyrValMetValLeuLeuTyrLeuP : 308 bp ||| :::||| :::::::::::::!!||| !. ++AsnSerGlyAspAsnPheGluLysLeuIleIleValMetTyrThrI 61799 : ............agaattccggagataattttgaaaaattgataattgtaATGTATACAA : 61921 309 : heSerSerIleValGluPheCysMetValCysPheCysValGlnGluLeuLeuAsnAla : 328 !!.!!:!!:!!..!:!!|||! !:!::!!|||||||||:!!|||||||||:!!.!.||| leGlyAlaLeuThrGlnPheTyrValLeuCysPheCysIleGlnGluLeuValGluAla+ 61922 : TTGGTGCTCTAACGCAATTTTATGTATTGTGCTTCTGTATTCAAGAGTTAGTCGAAGCGg : 61981 329 : >>>> Target Intron 2 >>>> SerLysGluLeuThrAspLysAlaPheHisGl : 338 120 bp |||! !...:!!.!!||| ! !.! ! ||||| + ++SerThrSerValAlaAspAspValValHisGl 61982 : t.........................agAGCACATCTGTAGCGGACGATGTAGTACATGA : 62131 339 : uAspTrpPheArgCysArgLeuSerIleLysArgThrPheLeuLeuMetIleThrAlaAs : 358 | |||!:! !||| !:!! !:!!:!!|||..!.!! !:!!!!:||| !|||:! uArgTrpTyrPheCysAspValLeuValGlnArgValIleAlaMetIleIleLeuAlaAs 62132 : ACGATGGTATTTCTGTGATGTACTAGTACAACGAGTAATTGCTATGATTATTTTAGCTGA : 62191 359 : nLysLeuGluCysLysLeuAlaLysValGlyAsnPheAsnLeuAlaLeuProSerPheLe : 378 !|||:!!||||||!:!|||:!!!.. !! !!|||.!.:!!|||.!!||||||||||||:! pLysMetGluCysArgLeuSerSerPheArgAsnIleAspLeuThrLeuProSerPheMe 62192 : TAAAATGGAATGTAGACTGTCCAGTTTTCGGAACATAGATTTAACTTTACCATCTTTTAT : 62251 379 : uMetIle : 380 ! !:!: tSerVal 62252 : GTCGGTa : 62259 vulgar: CbirOr165 257 380 . KQ414777.1 61693 62259 + 220 M 33 99 G 1 0 M 1 3 5 0 2 I 0 76 3 0 2 M 35 105 5 0 2 I 0 116 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 61694 62259 220 + . gene_id 2 ; sequence CbirOr165 ; gene_orientation + KQ414777.1 exonerate:protein2genome:local cds 61694 61795 . + . KQ414777.1 exonerate:protein2genome:local exon 61694 61795 . + . insertions 0 ; deletions 1 KQ414777.1 exonerate:protein2genome:local splice5 61796 61797 . + . intron_id 1 ; splice_site "GT" KQ414777.1 exonerate:protein2genome:local intron 61796 61875 . + . intron_id 1 KQ414777.1 exonerate:protein2genome:local splice3 61874 61875 . + . intron_id 0 ; splice_site "ag" KQ414777.1 exonerate:protein2genome:local cds 61876 61980 . + . KQ414777.1 exonerate:protein2genome:local exon 61876 61980 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local splice5 61981 61982 . + . intron_id 2 ; splice_site "GT" KQ414777.1 exonerate:protein2genome:local intron 61981 62100 . + . intron_id 2 KQ414777.1 exonerate:protein2genome:local splice3 62099 62100 . + . intron_id 1 ; splice_site "AG" KQ414777.1 exonerate:protein2genome:local cds 62101 62259 . + . KQ414777.1 exonerate:protein2genome:local exon 62101 62259 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 61694 62259 220 + . alignment_id 2 ; Query CbirOr165 ; Align 61694 258 99 ; Align 61793 292 3 ; Align 61876 293 105 ; Align 62101 328 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr161 Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 451 Query range: 0 -> 264 Target range: 57441 -> 58233 1 : MetAspPheGlnAsnValAsnProLeuAsnIleArgLeuAsnLysLeuSerGlyAsnLeu : 20 ||||||||||||!:!:!!!:!! !||||||!!:! !:!!||||||! !|||||||||! ! MetAspPheGlnSerLeuSerGlnLeuAsnMetLeuIleAsnLysTyrSerGlyAsnGln 57442 : ATGGATTTTCAAAGCTTGAGTCAGCTAAATATGCTTATAAACAAGTATTCGGGGAATCAA : 57499 21 : LeuProMetThrAspArgAspSerSerPheThrLeuLeuTrpLysLeuTyrGlyValPhe : 40 |||||||||||||||!:! ! !!!!.!!!. !!! !:!!! ||| !|||..!:!!.!. LeuProMetThrAspLysLysThrLysLeuProTyrIleLeuLysSerTyrSerIleMet 57500 : CTACCGATGACGGATAAGAAAACGAAATTACCGTATATTTTAAAGAGCTATTCGATTATG : 57559 41 : ValThrValThrGluLeuLeuLeuThrValValLeuIleProGlyCysIleTyrValSer : 60 ! !:!!! !:!!||| !! ! !..!|||! !:!! !||| !.!! !!||| !! SerTrpLeuIleGlnLeuThrTyrLeuThrValCysValPheGlyLeuPheAsnValPro 57560 : TCTTGGCTGATACAGCTAACATACCTGACTGTCTGCGTTTTTGGTCTTTTCAACGTACCC : 57619 61 : ArgLysLysLeuMetGlnAspGlyLeuIleCysLeuAlaThrThrGlyGluMetAlaPhe : 80 ||| ! ||| !:!!:!!|||||| !:!! !:!!!.!..!.!! !||| ! ! ArgAspLysAlaLeuLysAspGlyThrValAsnIleValValAlaLeuGluGluIleVal 57620 : AGAGATAAAGCATTGAAGGACGGCACGGTAAATATAGTGGTTGCTTTAGAAGAAATTGTG : 57679 81 : MetIleValArgIleHisLysCysArgAspLeuValArgGlnLeuIleArgArgLeuAsn : 100 :!!:!!:!! !:!:|||!!. !!!:! !|||||||||::!|||||| !!..!|||||| LeuValIleTyrLeuHisAsnArgLysThrLeuValArgArgLeuIleGlyGluLeuAsn 57680 : CTGGTTATTTATTTGCACAACCGTAAAACTTTGGTACGAAGGTTAATTGGAGAACTGAAT : 57739 101 : GlyIleMetTyrValAlaAspLysAsnMetArgAsnIleValThrLysThrLeuLysPro : 120 !!:!!:!: |||! !:!!:!!! :!:||||||:!!..!! !!!.|||:!!||| !! ArgValLeuAlaValAspAsnGluMetLeuArgAsnValThrIleAsnThrValLysSer 57740 : CGTGTTCTCGCGGTAGATAACGAGATGCTACGAAATGTCACGATTAATACCGTGAAATCC : 57799 121 : ThrGlnValProLeuMetPheTyrThrAlaAlaGlyMetMetSerThrIleThrTrpCys : 140 !:!! !|||||| ...|||||| !|||.!!:!:! :!!..!!!: !||| LeuGluLysProLeuLysIleTyrThrIleAlaSerValAsnAlaValMetLeuTrpThr 57800 : TTAGAGAAAcccttgaaaatttatacgatTGCCAGTGTTAATGCAGTTATGCTTTGGACA : 57859 141 : CysLeuProPheValLeuIlePheGluLysSerValPheTrpAsnGluAspTyrLysMet : 160 ..!||||||.!!|||! !:!!|||..!!:!|||! !|||!:: !! !||||||!..:!! AlaLeuProLeuValGlnValPheArgArgSerGluPheTyrTyrThrAspTyrSerVal 57860 : GCTTTGCCACTCGTCCAAGTATTTCGGAGATCTGAGTTCTATTATACGGATTATAGTGTG : 57919 161 : ProAlaPhePheProLysGlnProPheSerLeuLysIlePheIleLeuAsnAsnLeuPhe : 180 |||||| !.!. !!|||||||||||||||! ! ! :!!|||:!! !..! !:!!.!! ProAlaAlaLeuSerLysGlnProPheSerTyrAspValPheValGlyGlyValValLeu 57920 : CCAGCTGCTCTATCTAAGCAACCGTTTTCATACGACGTTTTCGTCGGCGGCGTTGTTCTT : 57979 181 : IleMetLeuGlyCysIleTyrMetIleLeuLysLysIleAlaAlaAspValTyrMetIle : 200 !!::!!||| !!:!!|||! ::::::|||||||||.....!|||:!!|||! !!!: GlnIleIleGlyGlyValTyrThrValMetLysLysIleGlyValAspIleTyrThrMet 57980 : CAGATTATTGGTGGTGTATACAccgtaatgaaaaaaattggcgTGGATATTTATACGATG : 58039 201 : HisLeuValLeuLeuMetThrAlaGlnTyrGlnTyrIleAlaMetArgLeuThrMetIle : 220 ||||||:!!|||||||||||||||||||||:!!|||||| ! !:!:!!.!!|||! ! HisLeuIleLeuLeuMetThrAlaGlnTyrLysTyrIleArgGlyLysValAlaMetThr 58040 : CATTTGATTCTTTTAATGACGGCGCAGTACAAATATATTAGGGGCAAAGTTGCGATGACA : 58099 221 : PheHisGluGlnAsnGluHisGlyAspThrLysLysLysArgLeuSerGluIleAsnGln : 240 |||!..:!! ! |||||| ! !||| ! !!.!!!:!!!!!! !:!:!!. PheArgGlnTyrAsnGluAlaPheAspAspPheGlyAsnSerIleThrGlyLeuLysVal 58100 : TTTCGACAGTATAACGAAGCTTTCGATGATTTCGGCAACAGTATTACTGGACTGAAAGTT : 58159 241 : LysGlnGluArgGluMetMetAlaLeuCysArgHisHisAsnAlaValIleHisIleMet : 260 ..! |||!:!:!!! :!! ! ! ..! ...:::||| ! !||| ! SerCysGluLysGlnLysValIleLysGlnGluMetArgSerAlaSerHisHisTyrGlu 58160 : TCATGCGAGAAGCAAAAAGTGATCAAACAGGAAATGAGATCGGCGTCTCATCATTACGAA : 58219 261 : PheLeuLeuLys : 264 !!:!!:!!||| ValIleValLys 58220 : GTTATAGTCAAG : 58233 vulgar: CbirOr161 0 264 . KQ414777.1 57441 58233 + 451 M 264 792 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 57442 58233 451 + . gene_id 1 ; sequence CbirOr161 ; gene_orientation . KQ414777.1 exonerate:protein2genome:local cds 57442 58233 . + . KQ414777.1 exonerate:protein2genome:local exon 57442 58233 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 57442 58233 451 + . alignment_id 1 ; Query CbirOr161 ; Align 57442 1 792 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr161 Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 168 Query range: 323 -> 395 Target range: 62088 -> 63128 324 : LeuLeuAspAlaSerMetGluIleThrAspLysAlaPheHisGluGlyTrpTyrPheCys : 343 !!!|||:!! !|||! ...:!!.!!||| ! !.! ! |||||| !!|||||||||||| PheLeuAsn***SerThrSerValAlaAspAspValValHisGluArgTrpTyrPheCys 62089 : TTCTTGAATTAGAGCACATCTGTAGCGGACGATGTAGTACATGAACGATGGTATTTCTGT : 62146 344 : LysProSerIleLysTrpLysPheMetLeuIleIleMetAlaAsnAsnLeuGluCysLys : 363 ! ! !:!!:!! ! !.!! :!!||||||:!:|||:!!!!.:!!||||||!:! AspValLeuValGlnArgValIleAlaMetIleIleLeuAlaAspLysMetGluCysArg 62147 : GATGTACTAGTACAACGAGTAATTGCTATGATTATTTTAGCTGATAAAATGGAATGTAGA : 62206 364 : IleAlaLysIleGluAsnPheAsnLeuSerLeuProSerPheMetLys >>>> Targe : 380 :!::!!!...!!..!|||.!.:!!|||!!!|||||||||||||||..! LeuSerSerPheArgAsnIleAspLeuThrLeuProSerPheMetSer++ 62207 : CTGTCCAGTTTTCGGAACATAGATTTAACTTTACCATCTTTTATGTCGgt.......... : 62259 381 : t Intron 1 >>>> IleLeuAsnGlnSerTyrSerIleAlaLeuValPheLeuArgP : 394 824 bp ||||||||||||:!!||||||! !::!|||:!!||||||!:! ++IleLeuAsnGlnAlaTyrSerThrSerLeuLeuPheLeuLysA 62260 : ...............agATTCTAAACCAAGCATACTCGACTAGTTTGCTGTTTTTGAAAG : 63123 395 : heLys : 395 ||| laLys 63124 : CAAAA : 63128 vulgar: CbirOr161 323 395 . KQ414777.1 62088 63128 + 168 M 56 168 5 0 2 I 0 820 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 62089 63128 168 + . gene_id 2 ; sequence CbirOr161 ; gene_orientation + KQ414777.1 exonerate:protein2genome:local cds 62089 62256 . + . KQ414777.1 exonerate:protein2genome:local exon 62089 62256 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local splice5 62257 62258 . + . intron_id 1 ; splice_site "GT" KQ414777.1 exonerate:protein2genome:local intron 62257 63080 . + . intron_id 1 KQ414777.1 exonerate:protein2genome:local splice3 63079 63080 . + . intron_id 0 ; splice_site "AG" KQ414777.1 exonerate:protein2genome:local cds 63081 63128 . + . KQ414777.1 exonerate:protein2genome:local exon 63081 63128 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 62089 63128 168 + . alignment_id 2 ; Query CbirOr161 ; Align 62089 324 168 ; Align 63081 380 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr156NTE Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 320 -> 383 Target range: 1345579 -> 1345846 321 : AspAlaTyrTyrGluCysAspTrpTyrGluMetProLeuAspCysLysArgCysLe : 339 .!.|||! !||| !!:!!||||||!!::!:||| ! ! ! !! !|||! || GlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLysTyrThrArgSerLe 1345580 : CAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAAATACACGCGATCGTT : 1345634 340 : uLeuIleCysMetIleArgGlyGlnValMetLeuHisLeuThrAlaGlyArgPheT : 358 |:!!.!!|||!!: !|||..!||| ! !! !:!!||||||||||||!:!|||| uIlePheCysIleAlaArgSerGlnLysProSerTyrLeuThrAlaGlyLysPheT 1345635 : AATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAGCTGGCAAGTTCT : 1345691 359 : yrIlePheSerLeuAsnSerPheThrAsn >>>> Target Intron 1 >>>> : 368 ||:!:|||||||||.!.!!!||| !! ! 78 bp yrValPheSerLeuGluThrPheGlyIle++ 1345692 : ACGTGTTCTCGTTAGAAACATTCGGCATCgt......................... : 1345723 369 : ValIleLysThrSerLeuAlaTyrLeuSerMetLeuArgThrValLeu : 383 :!!:!!|||.!!|||:!!||||||||||||:!:|||!:!!:!:!!:!! ++IleValLysAlaSerMetAlaTyrLeuSerValLeuLysSerIleIle 1345724 : agATAGTAAAAGCGTCGATGGCCTATCTTTCCGTTCTGAAAAGCATTATC : 1345846 vulgar: CbirOr156NTE 320 383 . KQ414782.1 1345579 1345846 + 144 M 47 141 5 0 2 I 0 74 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345580 1345846 144 + . gene_id 1 ; sequence CbirOr156NTE ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345580 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345580 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345846 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345846 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345580 1345846 144 + . alignment_id 1 ; Query CbirOr156NTE ; Align 1345580 321 141 ; Align 1345799 368 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr158PN Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 168 -> 256 Target range: 1344678 -> 1344942 169 : TyrIleLeuProTyrArgPheHisMetPheTyrAlaIleGluAsnMetLeuSerTy : 187 ||| |||||| !:! ! :!! .!.|||! !:!: !.!.:!!! !!!!|| TyrGluLeuProMetLysValAsnHisLeuTyrGluValThrGluValArgThrTy 1344679 : TACGAGCTACCAATGAAAGTGAACCACCTGTACGAAGTGACAGAGGTGCGGACGTA : 1344733 188 : rValIleThrTyrGlyValGlnLeuProPheValPheIleSerGlyPheGlyGlnS : 206 |!.!:!: !! !! ! ! :!!||| !.!.:!! ! !.!!||| !! rAlaLeuPheCysValTyrPheValProThrSerMetLeuLeuThrIleGlyAlaT 1344734 : CGCTTTGTTCTGCGTTTACTTCGTACCGACGAGCATGTTACTAACAATCGGTGCAA : 1344790 207 : erAlaAlaAspCysLeuMetValThrLeuValPheHisIleCysGlyGlnMetAla : 224 !!!.!|||||| !!|||:!:|||||||||..!||||||:!!|||.!!|||.!.:!! hrGlyAlaAspSerLeuLeuValThrLeuThrPheHisLeuCysSerGlnPheSer 1344791 : CTGGCGCCGACAGTCTTCTAGTCACCTTGACTTTCCATCTTTGCAGTCAATTTTCG : 1344844 225 : ValLeuAlaLeuArgIleAsnAsnIleSerThrAspSerTyrAsnCysGlyHisGl : 243 :!:|||::: |||:::...||||||..!..!!!: !! ! !!.! ! !! :! IleLeuSerSerArgValLysAsnIleAspValGluProGlnLysTyrPheProGl 1344845 : ATcctgtcgagccgtgtaaaaAATATCGACGTCGAGCCGCAAAAGTATTTCCCACA : 1344901 244 : uIleArgHisValValArgMetHisIleArgLeuLeuArg : 256 !!!:!:! :!!|||..! !|||! !..!||||||||| nMetLysAlaLeuValGluArgHisThrGluLeuLeuArg 1344902 : AATGAAAGCACTCGTTGAACGGCACACCGAACTTCTACGG : 1344942 vulgar: CbirOr158PN 168 256 . KQ414782.1 1344678 1344942 + 131 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1344679 1344942 131 + . gene_id 1 ; sequence CbirOr158PN ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1344679 1344942 . + . KQ414782.1 exonerate:protein2genome:local exon 1344679 1344942 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1344679 1344942 131 + . alignment_id 1 ; Query CbirOr158PN ; Align 1344679 169 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr154 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 337 Query range: 181 -> 402 Target range: 32801 -> 34319 182 : GlnSerPheSerThrIleHisSerGlyIleCysThrCysCysPheAspAsnPheValSer : 201 |||:!!!!.|||..! !!!. !|||:!:||| ! !||||||||||||... GlnAlaLeuSerValTyrGlnValGlyValCysTyrLeuCysPheAspAsnIlePhePhe 32802 : CAGGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCTttgataacatttttttc : 32859 202 : ThrPheAsnIleHisValAlaAlaGlnLeuLysIleLeuAlaHisLysValGluValIle : 221 ... !:!!|||||||||!.!|||!!!:::|||||| !:!!!:!:!!! !:!: IleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnVal 32860 : attatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTG : 32919 222 : <-><->ValGluLysCysIleGluAsnThrValAsnGlyGluCysProProAsnIleMet : 239 :!!...:!! :!::!!!:!!.!! !||| !... !! ! ! SerGlyLeuSerGluIleValLysSerAsnAspAsnThrSerThrAlaGluLeuTyrSer 32920 : TCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACAAGCACGGCTGAATTATACTCA : 32979 240 : GluMetAlaLeuLysLysLeuGlnAsnCysIleGlnGlnHisLeuThrLeuIleCysTyr : 259 |||! ..!! !! |||!!!:!!||||||||||||||||||! !.!!|||||| ::: GluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPhe 32980 : GAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTaattgaattt : 33039 260 : ValArgAsnMetGlnArgAlaPheAlaValIleLeuLeuGlyGlnLeuLeuLeuSerSer : 279 ... ::::!!..!!.!|||.!!||||||:!!|||||||||:!!|||:!!! !||| CysGluIleLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMetPheSer 33040 : tgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTAATGTTTAGC : 33099 280 : IleValIleCysPheGlyGlyPheGlnPheLeuGlu >>>> Target Intron 1 > : 292 |||:!!|||||||||!.!|||!:!:!! ! ||| ! 406 bp IleIleIleCysPheAlaGlyTyrGluValLeuLeu++ 33100 : ATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGgt...................... : 33140 293 : >>> ThrAsnValAlaValArg<->LysPheLeuPheAlaCysHisPheValGlyGlyL : 309 ! !!..:!! !! !!..! ::: !! !|||.!!||| !!!.:!! !|||: ++IleThrLeuProPheGluSerArgValAlaPheThrCysPheLeuIleThrGlyV 33141 : ...agATAACGTTACCATTTGAATCGCGCGTTGCTTTCACGTGCTTCTTGATTACGGGCG : 33598 310 : euIleGlnLeuPheIleTyrThrTrpThrCysAsnAspIleIleIleGlnSerThrAlaI : 329 !!! !||||||!::!!:!:!|||!::!:!|||||| !|||! !! !:!!||| ! !| alSerGlnLeuTrpMetPheThrTyrSerCysAsnCysIleThrThrGluSerLeuAsnI 33599 : TGAGTCAACTATGGATGTTCACGTACAGTTGCAATTGCATAACAACAGAAAGCCTGAACA : 33658 330 : leSerAspAlaAlaTyrAsnSerLysTrpTyrLeuLeuSerAsnAsnAspProGlyLysT : 349 ||:!!!!::!!!.!||| !.!! !||| !||| !!! ::: |||||| leAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysL 33659 : TCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaac : 33718 350 : hrLeuArgLysGlyLeuIleMetIleMetIleArgAlaArgArgProCysThrLeuThrA : 369 |||||||||! !||| !:!!:!!!!::!:|||||||||||||||! !.!!||||||| euLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerAlaLeuThrA 33719 : tgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACTG : 33778 370 : laGlyTyrValThrValIleSerLeuAspThrPheMetGly >>>> Target Intro : 383 || !! !! ! !|||!!!|||!!:||||||! ! 440 bp laCysGlyPhePheSerIleThrLeuGluThrPheThrLys++ 33779 : CCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTACTAAGgt................. : 33822 384 : n 2 >>>> IleLeuSerLysAlaMetSerTyrPheThrLeuLeuArgGlnMetSerGl : 399 |||:!!|||! !:!!|||||||||||||||||||||!:!|||! :!!|| ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnSerAlaGl 33823 : ........agATCATGAGTACATCAATGTCGTATTTCACCCTACTAAAACAAAGTGCCGA : 34308 400 : uGluGluIle : 402 |!!: !:!! uAspThrVal 34309 : GGACACAGTA : 34319 vulgar: CbirOr154 181 402 . KQ414828.1 32801 34319 + 337 M 40 120 G 0 6 M 70 210 5 0 2 I 0 402 3 0 2 M 6 18 G 0 3 M 85 255 5 0 2 I 0 436 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32802 34319 337 + . gene_id 1 ; sequence CbirOr154 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32802 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32802 33137 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33543 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 33542 33543 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 33544 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33544 33819 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 2 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34319 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34319 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32802 34319 337 + . alignment_id 1 ; Query CbirOr154 ; Align 32802 182 120 ; Align 32928 222 210 ; Align 33544 292 18 ; Align 33565 298 255 ; Align 34260 383 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr154 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 322 Query range: 161 -> 402 Target range: 22352 -> 24199 162 : PheLysLeuTrpPheAspPheProTyrHis<->SerProTyrTyrGluValThrTyrThr : 180 !:! ! :!!|||.!!|||.!.|||! ! !!!||||||||||||:::||||||! ! TyrAspMetTrpLeuAspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIle 22353 : TACGATATGTGGCTCGATCTACCATTATCCGTAACAccatattatgaaattacttACATA : 22410 181 : IleGlnSerPheSerThrIleHis{S} >>>> Target Intron 1 >>>> {er} : 189 |||||| !!!. !!! !.!! {!} 307 bp { !} IleGlnValLeuProIlePheSer{I}+- ++{le} 22411 : ATACAGGTATTACCAATTTTCTCA{A}gg.........................ag{TT} : 22745 190 : GlyIleCysThrCysCysPheAspAsnPheValSerThrPheAsnIleHisValAlaAla : 209 .!! ||| ! !||||||||| ... ... :!!|||||||||!.! SerAlaCysTyrLeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGly 22746 : AGCGCGTGTTACCTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGT : 22804 210 : GlnLeuLysIleLeuAlaHisLysValGluValIle<-><->ValGluLysCysIleGlu : 227 |||!!!:::|||||| !:!!!:!:!!! !:!: :!!...:!! :!::!! GlnPheArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLys 22805 : CAGTTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAA : 22864 228 : AsnThrValAsnGlyGluCysProProAsnIleMetGluMetAlaLeuLysLysLeuGln : 247 !:!!:!! !||| !... ! ! ! |||! ..!! !! |||!!!:!! SerSerGluAsnProSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLys 22865 : AGCAGTGAAAATCCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAG : 22924 248 : AsnCysIleGlnGlnHisLeuThrLeuIleCysTyrValArgAsnMetGlnArgAlaPhe : 267 ||||||||||||||||||! !.!!|||||| !:! ! !!..:!::!!..!!.!||| AsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPhe 22925 : AATTGCATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTC : 22984 268 : AlaValIleLeuLeuGlyGlnLeuLeuLeuSerSerIleValIleCysPheGlyGlyPhe : 287 .!!||||||:!!|||||||||:!!|||:!!|||||||||:!!||||||||| !|||!:! ThrValIleValLeuGlyGlnValLeuMetSerSerIleLeuIleCysPheIleGlyTyr 22985 : ACGGTAATCGTACTCGGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTAT : 23044 288 : GlnPheLeuGluThrAsnVal<->AlaValArgLysPhe{L} >>>> Target Intr : 300 ||| ! ||| !..!!:!:!! ::! !!.!|||!:!{!} 492 bp GlnValLeuLeuValSerIleGluSerTyrAsnLysTyr{S}++ 23045 : CAAGTACTCCTGGTGAGTATCGAAAGCTATAATAAATAC{T}gt................ : 23089 301 : on 2 >>>> {eu}PheAlaCysHisPheValGlyGlyLeuIleGlnLeuPheIleTyr : 315 { !}||||||||| !!!.:!! !|||:!!! !||||||!::!!:!:! -+{er}PheAlaCysPheLeuMetMetGlyMetSerGlnLeuTrpMetPhe 23090 : .........tg{CT}TTCGCGTGCTTCTTGATGATGGGCATGAGTCAACTATGGATGTTC : 23623 316 : ThrTrpThrCysAsnAspIleIleIleGlnSerThrAlaIleSerAspAlaAlaTyrAsn : 335 |||!::!:!|||:!! !|||! !! !:!!||| ! !|||:!!!!::!!!.!||| ! ThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAla 23624 : ACGTATAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTGTACGCT : 23683 336 : SerLysTrpTyrLeuLeuSerAsnAsnAspProGlyLysThrLeuArgLysGlyLeuIle : 355 .!! !||| !||| !!! :!! ! !|||||| !|||||||||! !||| ! GlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysGluLeuGln 23684 : GGACCATGGATAAATTTACCAATGGACAAATTTGGAAAACTGCTAAGAAAAGAATTGCAA : 23743 356 : MetIleMetIleArgAlaArgArgProCysThrLeuThrAlaGlyTyrValThrValIle : 375 |||:!!!!::!:|||||||||||||||! !.!!||||||||| !! !! ! !||| MetLeuIleLeuArgAlaArgArgProSerAlaLeuThrAlaCysGlyPhePheSerIle 23744 : ATGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTGTGGATTCTTTTCTATA : 23803 376 : SerLeuAspThrPheMetGly >>>> Target Intron 3 >>>> IleLeuSerL : 386 ||||||!!:||||||! ! 313 bp |||:!!|||! SerLeuGluThrPheThrLys++ ++IleMetSerT 23804 : TCTCTCGAAACCTTTACTAAGgt.........................agATCATGAGTA : 24149 387 : ysAlaMetSerTyrPheThrLeuLeuArgGlnMetSerGluGluGluIle : 402 !:!!|||||||||||||||||||||!:!||| ! !|||!!: !:!! hrSerMetSerTyrPheThrLeuLeuLysGlnCysIleGluAspThrVal 24150 : CATCAATGTCGTATTTCACATTATTAAAACAATGTATCGAGGACACGGTA : 24199 vulgar: CbirOr154 161 402 . KQ414828.1 22352 24199 + 322 M 10 30 G 0 3 M 17 51 S 0 1 5 0 2 I 0 303 3 0 2 S 1 2 M 32 96 G 0 6 M 73 219 G 0 3 M 5 15 S 0 1 5 0 2 I 0 488 3 0 2 S 1 2 M 82 246 5 0 2 I 0 309 3 0 2 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22353 24199 322 + . gene_id 2 ; sequence CbirOr154 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22353 22437 . + . KQ414828.1 exonerate:protein2genome:local exon 22353 22437 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22438 22439 . + . intron_id 1 ; splice_site "GG" KQ414828.1 exonerate:protein2genome:local intron 22438 22744 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22743 22744 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22745 23086 . + . KQ414828.1 exonerate:protein2genome:local exon 22745 23086 . + . insertions 9 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23087 23088 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23087 23578 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 23577 23578 . + . intron_id 1 ; splice_site "TG" KQ414828.1 exonerate:protein2genome:local cds 23579 23826 . + . KQ414828.1 exonerate:protein2genome:local exon 23579 23826 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23827 23828 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23827 24139 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 24138 24139 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 24140 24199 . + . KQ414828.1 exonerate:protein2genome:local exon 24140 24199 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22353 24199 322 + . alignment_id 2 ; Query CbirOr154 ; Align 22353 162 30 ; Align 22386 172 51 ; Align 22747 190 96 ; Align 22849 222 219 ; Align 23071 295 15 ; Align 23581 301 246 ; Align 24140 383 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr154 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 287 Query range: 161 -> 402 Target range: 37495 -> 39223 162 : PheLysLeuTrpPheAspPheProTyrHis<->SerProTyrTyrGluValThrTyrThr : 180 !:! ! :!!|||.!!|||.!.|||! ! !!!||||||||||||:::||||||! ! TyrAspMetTrpLeuAspLeuProLeuSerIleThrProTyrTyrGluIleThrTyrIle 37496 : TACGATATGTGGCTCGATCTACCATTATCCATAACAccatattatgaaattacttACATA : 37553 181 : IleGln >>>> Target Intron 1 >>>> SerPheSerThrIleHisSerGlyI : 191 |||||| 307 bp :!!!!.|||..! !!!. !.!! IleGln++ ++AlaLeuSerValTyrGlnValSerA 37554 : ATACAGgt.........................agGCTTTATCTGTGTACCAAGTTAGCG : 37893 192 : leCysThrCysCysPheAspAsnPheValSerThrPheAsnIleHisValAlaAlaGlnL : 211 ||| ! !||||||||| ... ... :!!|||||||||!.!|||! laCysTyrLeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnP 37894 : CGTGTTACCTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGT : 37953 212 : euLysIleLeuAlaHisLysValGluValIle<-><->ValGluLysCysIleGluAsnT : 229 !!:::|||||| !:!!!:!:!!! !:!: :!!...:!! :!::!!!:!! heArgIleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerS 37954 : TTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCA : 38013 230 : hrValAsnGlyGluCysProProAsnIleMetGluMetAlaLeuLysLysLeuGlnAsnC : 249 :!! !||| !... ! ! ! |||! ..!! !! |||!!!:!!|||| erGluAsnProSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnC 38014 : GTGAAAATCCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATT : 38073 250 : ysIleGlnGlnHisLeuThrLeuIleCysTyrValArgAsnMetGlnArgAlaPheAlaV : 269 ||||||||||||||! !.!!|||||| !:! ! !!..:!::!!..!!.!|||.!!| ysIleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrV 38074 : GCATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGG : 38133 270 : alIleLeuLeuGlyGlnLeuLeuLeuSerSerIleValIleCysPheGlyGlyPheGlnP : 289 ||||| !|||||||||:!!|||:!!! !||||||:!!|||||||||! !! !!:!||| alIleAlaLeuGlyGlnValLeuMetPheSerIleLeuIleCysPheValValTyrGlnA 38134 : TAATTGCACTCGGACAAGTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAG : 38193 290 : heLeuGlu >>>> Target Intron 2 >>>> ThrAsnValAlaValArgLysPh : 299 ||| ! 289 bp ... ::: !!!!.! laLeuLeu++ ++AsnPheTyrTyrLeuTrpAsn** 38194 : CACTCCTGgt.........................agaatttttattacctgTGGAATTA : 38512 300 : eLeuPheAlaCysHisPheValGlyGlyLeuIleGlnLeuPheIleTyrThrTrpThrCy : 319 :!!|||||| :!! !|||:!!! !||||||!::!!:!:!|||!::!:!|| *MetPheAlaThr------MetThrGlyValSerGlnLeuTrpMetPheThrTyrSerCy 38513 : AATGTTCGCAACG------ATGACGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTG : 38566 320 : sAsnAspIleIleIleGlnSerThrAlaIleSerAspAlaAlaTyrAsnSerLysTrpTy : 339 |:!! !|||! !! !:!!||| ! !|||:!!!!::!!!.!||| !.!! !||| sAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyProTrpIl 38567 : CGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCATGGAT : 38626 340 : rLeuLeuSerAsnAsnAspProGlyLysThrLeuArgLysGlyLeuIleMetIleMetIl : 359 !||| !!! ::: |||||| |||||||||! !||| !:!!:!!!!::! eAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeuIleLe 38627 : AAATTTACCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTCATCTT : 38686 360 : eArgAlaArgArgProCysThrLeuThrAlaGlyTyrValThrValIleSerLeuAspTh : 379 :|||||||||||||||! !:!!||||||||| !! !! ! !|||||||||!!:|| uArgAlaArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeuGluTh 38687 : GAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTCGAAAC : 38746 380 : rPheMetGlyIleLeuSerLysAla{M} >>>> Target Intron 3 >>>> {et : 388 ||||! !:!!!!!!.! ! {|} 406 bp {|| rPheThrLysValPheLysTyr***{M}++ +-{et 38747 : CTTTACTAAGGTATTTAAATACtaa{a}gt.........................aa{TG : 39180 389 : }SerTyrPheThrLeuLeuArgGlnMetSerGluGluGluIle : 402 }||||||||||||||||||!:!|||! ! !!!:!!: !:!! }SerTyrPheThrLeuLeuLysGlnSerIleAspAspThrVal 39181 : }TCGTATTTCACATTATTAAAACAAAGTATCGACGACACGGTA : 39223 vulgar: CbirOr154 161 402 . KQ414828.1 37495 39223 + 287 M 10 30 G 0 3 M 11 33 5 0 2 I 0 303 3 0 2 M 39 117 G 0 6 M 70 210 5 0 2 I 0 285 3 0 2 M 12 36 G 2 0 M 82 246 S 0 1 5 0 2 I 0 402 3 0 2 S 1 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37496 39223 287 + . gene_id 3 ; sequence CbirOr154 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37496 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37496 37561 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 38201 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 38201 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 38202 38203 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 38202 38490 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 38489 38490 . + . intron_id 1 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 38491 38773 . + . KQ414828.1 exonerate:protein2genome:local exon 38491 38773 . + . insertions 0 ; deletions 2 KQ414828.1 exonerate:protein2genome:local splice5 38774 38775 . + . intron_id 3 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 38774 39179 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 39178 39179 . + . intron_id 2 ; splice_site "AA" KQ414828.1 exonerate:protein2genome:local cds 39180 39223 . + . KQ414828.1 exonerate:protein2genome:local exon 39180 39223 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37496 39223 287 + . alignment_id 3 ; Query CbirOr154 ; Align 37496 162 30 ; Align 37529 172 33 ; Align 37869 183 117 ; Align 37992 222 210 ; Align 38491 292 36 ; Align 38527 306 246 ; Align 39182 389 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr154 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 211 Query range: 153 -> 287 Target range: 2894 -> 3705 154 : AsnValThrLysLysIleLeuProPheLysLeuTrpPheAspPheProTyrHis<->SerPr : 173 ||| ::: ! !:!:!!||| ! !!!!.!!!|||.!!|||.!.||| ! !!!|| AsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuProIleThrIleThrPr 2895 : aatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCCGATAACCATCACACC : 2955 174 : oTyrTyrGluValThrTyrThrIleGln >>>> Target Intron 1 >>>> SerPh : 184 ||||||||||::: :::||||||||| 406 bp ! !|| oTyrTyrGluIleLeuPheThrIleGln++ ++IlePh 2956 : ATactatgaaatattatttacgaTACAGgt.........................agATTTT : 3394 185 : eSerThrIleHisSerGlyIleCysThrCysCysPheAspAsnPheValSerThrPheAsnI : 205 |! !! !!!::!! ! !!||| !! ! !|||.!!|||||||||:!!!!!! !.!!|||: eIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheLeuCysMetIleAsnL 3395 : TATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTCTGTGCATGATCAATC : 3457 206 : leHisValAlaAlaGlnLeuLysIleLeuAlaHisLysValGluValIleValGluLysCys : 225 !!|||..!|||.!!|||!!!::!|||||| !:!!!:!:!!..! !:!: !! ! ! euHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnValCysGlyAlaAsn 3458 : TACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGTGCAAAC : 3517 226 : IleGluAsnThrValAsnGlyGluCysProProAsnIleMetGluMetAlaLeuLysLysLe : 246 !...!:: ...::: |||::!! ! !!!: ..!! ! |||!! GluArgSerAspLysIleSerLysLysThrProSerAsnSerAspGluCysTyrAlaLysPh 3518 : GAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTT : 3580 247 : uGlnAsnCysIleGlnGlnHisLeuThrLeuIleCysTyrValArgAsnMetGlnArgAlaP : 267 !:!!||||||||||||||||||! !.!!|||||| ||| !!.!!!.:!:|||..!!.!| eLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnLysLeuGlnGluValP 3581 : CAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACAAACTTCAAGAGGTGT : 3643 268 : heAlaValIleLeuLeuGlyGlnLeuLeuLeuSerSerIleValIleCysPheGlyGlyPhe : 287 ||!.!:!!.!!:!!|||!.!|||:!!||||||! !|||:!::!!!!:|||.!!! !|||!:! heGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAspGlyTyr 3644 : TCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGGATAT : 3703 vulgar: CbirOr154 153 287 . KQ414828.1 2894 3705 + 211 M 18 54 G 0 3 M 11 33 5 0 2 I 0 402 3 0 2 M 105 315 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2895 3705 211 + . gene_id 4 ; sequence CbirOr154 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2895 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2895 2984 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3705 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3705 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2895 3705 211 + . alignment_id 4 ; Query CbirOr154 ; Align 2895 154 54 ; Align 2952 172 33 ; Align 3391 183 315 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr154 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 297 -> 380 Target range: 28526 -> 28775 298 : LysPheLeuPheAlaCysHisPheValGlyGlyLeuIleGlnLeuPheIleTyrThrTrp : 317 ::: !! !!!.|||||| !! :!! !|||:!!! !||||||!::!!:!:!|||!:: ArgValAlaLeuAlaCysPheSerMetThrGlyValSerGlnLeuTrpMetPheThrTyr 28527 : CGCGTTGCTTTGGCGTGCTTCTCGATGACGGGCGTGAGTCAACTATGGATGTTCACGTAC : 28584 318 : ThrCysAsnAspIleIleIleGlnSerThrAlaIleSerAspAlaAlaTyrAsnSerLys : 337 !:!|||:!! !|||! !! !:!!||| ! !|||:!!!!::!!!.!||| !.!! ! SerCysAspCysIleThrThrGluSerLeuAsnIleAlaGluSerValTyrAlaGlyPro 28585 : AGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGCTGAATCTGTATACGCTGGACCA : 28644 338 : TrpTyrLeuLeuSerAsnAsnAspProGlyLysThrLeuArgLysGlyLeuIleMetIle : 357 ||| !||| !!! ::: |||||| |||||||||! !||| !:!!:!! TrpIleAsnLeuProMetAspLysPheGlyLysLeuLeuArgLysAspLeuGlnValLeu 28645 : TGGATAAATTTACCAATggataaatttggaaaactgCTAAGAAAAGATCTACAAGTGCTC : 28704 358 : MetIleArgAlaArgArgProCysThrLeuThrAlaGlyTyrValThrValIleSerLeu : 377 !!::!:|||||||||||||||! !:!!||||||||| !! !! ! !||||||||| IleLeuArgAlaArgArgProSerSerLeuThrAlaCysGlyPhePheSerIleSerLeu 28705 : ATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCCTGTGGATTCTTTTCTATATCTCTC : 28764 378 : AspThrPhe : 380 !!:|||||| GluThrPhe 28765 : GAAACCTTT : 28775 vulgar: CbirOr154 297 380 . KQ414828.1 28526 28775 + 147 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28527 28775 147 + . gene_id 5 ; sequence CbirOr154 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28527 28775 . + . KQ414828.1 exonerate:protein2genome:local exon 28527 28775 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28527 28775 147 + . alignment_id 5 ; Query CbirOr154 ; Align 28527 298 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr154 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 188 -> 296 Target range: 10849 -> 11179 189 : SerGlyIleCysThrCysCysPheAspAsnPheValSerThrPheAsnIleHisValAla : 208 !!!||||||||| !! !||||||||||||.!! !!!!!! !.!.!:!:!:|||:!!::! ThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerValHisLeuSer 10850 : ACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTGCATTTGAGT : 10907 209 : AlaGlnLeuLysIleLeuAlaHisLysValGluValIle<-><->ValGluLysCysIle : 226 !.!|||!!!:::|||||| !:!!!:!:!! ! !:!: |||:!! ! ||| GlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGlnTyrGlnIle 10908 : GGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAATATCAGATA : 10967 227 : GluAsnThrValAsnGlyGluCysProProAsnIleMetGluMetAlaLeuLysLysLeu : 246 ...... ... ! !:!! !! ...! :!!! !:!!|||!!! SerGluLysAsnMetGluSerValLeuGluAspCysThrArgArgSerTyrGluLysPhe 10968 : AgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGTAGATCTTACGAGAAATTT : 11027 247 : GlnAsnCysIleGlnGlnHisLeuThrLeuIleCysTyrValArgAsnMetGlnArgAla : 266 :!!!:!! !:!!!:!||||||! !||||||||| !||| !..!!!.:!::!!!.!!.! LysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLysLeuGluHisVal 11028 : AAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAGCTTGAACACGTT : 11087 267 : PheAlaValIleLeuLeuGlyGlnLeuLeuLeuSerSerIleValIleCysPheGlyGly : 286 !:!.!! !|||:!!|||||||||:!!||||||! !|||:!::!!||||||.!! !||| TyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIleCysLeuPheGly 11088 : TACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATTTGCCTCTTTGGT : 11147 287 : PheGlnPheLeuGluThrAsnValAlaVal : 296 !:!|||.!.||| !..!!:!:!!:!!:!! TyrGlnIleLeuLeuValSerIleSerLeu 11148 : TATCAGATATTATTGGTTAGTATTTCACTT : 11179 vulgar: CbirOr154 188 296 . KQ414828.1 10849 11179 + 145 M 33 99 G 0 6 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10850 11179 145 + . gene_id 6 ; sequence CbirOr154 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 10850 11179 . + . KQ414828.1 exonerate:protein2genome:local exon 10850 11179 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10850 11179 145 + . alignment_id 6 ; Query CbirOr154 ; Align 10850 189 99 ; Align 10955 222 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr154 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 153 -> 218 Target range: 17839 -> 18147 154 : AsnValThrLysLysIleLeuProPheLysLeuTrpPheAspPheProTyrHis<->Ser : 172 ||| :!!:!!!:!||||||||||||!!.:!!||| !!:!!!!.|||! !!! AsnGluSerGluArgIleLeuProPheAsnMetTrpValAsnLeuProLeuSerMetThr 17840 : aatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTCAACTTGCCATTATCAATGACG : 17897 173 : ProTyrTyrGluValThrTyrThrIleGln >>>> Target Intron 1 >>>> S : 183 ||||||||||||:::|||:::::::::||| 110 bp ProTyrTyrGluIleThrPheSerLeuGln++ ++V 17898 : CCATATTACgaaataactttttcattaCAGgt.........................agg : 18040 184 : erPheSerThrIleHisSerGlyIleCysThrCysCysPheAspAsnPheValSerThrP : 203 !.!.||| ! !|||! !|||:!: !! !! !|||||||||||||||::: !. alLeuSerLeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIleM 18041 : tTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgcttcgacaattttttatgcatCA : 18100 204 : heAsnIleHisValAlaAlaGlnLeuLysIleLeuAlaHisLysVal : 218 !.|||:!:|||!.!|||.!!|||!!!::!:!!||| !:!!::!:!! etAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnTyrArgMet 18101 : TGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAATACCGAATG : 18147 vulgar: CbirOr154 153 218 . KQ414828.1 17839 18147 + 132 M 18 54 G 0 3 M 11 33 5 0 2 I 0 106 3 0 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17840 18147 132 + . gene_id 7 ; sequence CbirOr154 ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17840 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17840 17929 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18147 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18147 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17840 18147 132 + . alignment_id 7 ; Query CbirOr154 ; Align 17840 154 54 ; Align 17897 172 33 ; Align 18040 183 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr154 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 8 -> 78 Target range: 15127 -> 15337 9 : SerValArgIleThrArgLeuPheMetLysMetValGlyLeuTrpTyrValGluThrPro : 28 |||:!!!!!:!:||| !:!!|||||||||!!:|||||||||||| !.!..!!.!! ! SerIleSerLeuThrSerValPheMetLysIleValGlyLeuTrpMetAlaSerAsnArg 15128 : TCAATCAGCCTGACGTCCGTTTTCATGAAGATCGTTGGACTGTGGATGGCGTCGAACCGT : 15185 29 : ArgGluArgLeuLeuLeuArgAlaAlaPheSerTyrAlaIleTrpAlaIleValPheAla : 48 !|||!:!! !:!!! !!.! !.!!.!.!!!|||.!!:!: ||||||:!!|||||| PheGluGlnArgValArgAsnIleThrLeuCysTyrThrLeuIleAlaIleLeuPheAla 15186 : TTCGAGCAACGAGTACGAAATATCACGCTGTGTTACACGCTGATCGCGATTCTCTTCGCC : 15245 49 : IleLeuValValGlyValAspLeuTyrTyrCysIleGlyAspPheTyrAlaValThrSer : 68 :!:! !:!! ! !..!||||||||||||! ||||||||| !!.! !.!!!!! LeuTrpIleGlnMetThrAspLeuTyrTyrSerTrpGlyAspPheGlyValSerAlaArg 15246 : CTGTGGATACAAATGACGGATTTGTATTACTCGTGGGGAGATTTTGGTGTAAGTGCGAGG : 15305 69 : AsnLeuCysThrThrLeuLeuLeuIleMet : 78 ...:!!|||..! !! !:!!||| !||| GlyIleCysValLeu***ValLeuGluMet 15306 : GGAATTTGTGTGCTTTAGGTGTTGGAAATG : 15337 vulgar: CbirOr154 8 78 . KQ414828.1 15127 15337 + 118 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15128 15337 118 + . gene_id 8 ; sequence CbirOr154 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 15128 15337 . + . KQ414828.1 exonerate:protein2genome:local exon 15128 15337 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15128 15337 118 + . alignment_id 8 ; Query CbirOr154 ; Align 15128 9 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr154 Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 245 -> 290 Target range: 18243 -> 18378 246 : LeuGlnAsnCysIleGlnGlnHisLeuThrLeuIleCysTyrValArgAsnMetGlnArg : 265 |||:!!:!!! !|||::!||||||! !!.!||||||..!||| !!.!!!.:!::!!!:! LeuLysAspTyrIleArgGlnHisGlnAsnLeuIleAlaTyrCysAsnLysLeuGluLys 18244 : CTCAAAGATTATATCAGACAGCATCAGAACCTGATTGCTTATTGCAACAAACTCGAGAAA : 18301 266 : AlaPheAlaValIleLeuLeuGlyGlnLeuLeuLeuSerSerIleValIleCysPheGly : 285 !.!||| !:!!|||:!!|||||||||||||||:!!! !|||!!::!!||||||.!!! ! ValPheAsnIleIleValLeuGlyGlnLeuLeuMetPheSerMetLeuIleCysLeuAsp 18302 : GTGTTCAATATCATTGTTCTGGGGCAATTGTTAATGTTCAGCATGTTGATCTGTCTCGAT : 18361 286 : GlyPheGlnPheLeu : 290 |||||||||.!.||| GlyPheGlnIleLeu 18362 : GGATTTCAGATACTT : 18378 vulgar: CbirOr154 245 290 . KQ414828.1 18243 18378 + 114 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 18244 18378 114 + . gene_id 9 ; sequence CbirOr154 ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 18244 18378 . + . KQ414828.1 exonerate:protein2genome:local exon 18244 18378 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 18244 18378 114 + . alignment_id 9 ; Query CbirOr154 ; Align 18244 246 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr155PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 209 Query range: 23 -> 235 Target range: 22385 -> 23826 24 : SerProTyrTyrGluIleAlaTyr >>>> Target Intron 1 >>>> ThrLeuP : 34 !!!|||||||||||||||...||| 316 bp .!!||| ThrProTyrTyrGluIleThrTyr-+ ++AlaLeuS 22386 : ACAccatattatgaaattacttACat.........................agGCTTTAT : 22732 35 : roIleMetAlaGlnLeuGluAsnValIleCysIlePheCysPheAspAsnPheValArgU : 54 !!:!: ! !! ! ! !:!!||| ||| ... |||::: erValTyrGlnValSerAlaCysTyrLeuCys---PheAspIleIlePhePheIleLeuC 22733 : CTGTGTACCAAGTTAGCGCGTGTTACCTTTGC---tttgatatcatttttttcattttgt : 22789 55 : nkValHisValAlaAlaGlnLeuLysIleLeuAsnArgLysValAspIleIleThrGluL : 74 :!!|||||||||!.!|||!!!:::||||||.!. !!:!:!!! !! !:!::!!! ysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnValSerGlyL 22790 : gtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTGTCAGGTC : 22849 75 : ysCysIleGluAspSerAlaAsnGluLysCysGlnProGluIleAspSerIleGluTrpV : 94 ! !! !! !.!::!!:!|||!!. ... !!!!: ! ! ! !||| euSerGluIleValLysSerSerGluAsnProSerThrAspGluLeuTyrSerGluLysC 22850 : TAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAATTATACTCAGAGAAAT : 22909 95 : alLeuLysLysLeuGlnAsnCysValGlnGlnHisLeuThrLeuIleIleThrTyrValA : 114 !! !! |||!!!:!!||||||:!!|||||||||! !.!!||| ||| !!:! ! ysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeu---IleGluPheCysA 22910 : GTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTA---ATTGAATTTTGTG : 22966 115 : rgAsnMetGlnArgValPheAlaIleIleLeuLeuGlyGlnUnkProLeuSerSerValI : 134 !!..:!::!!..!||||||.!!:!!|||:!!||||||||| ! !:!!||||||:!!: laThrLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMetSerSerIleL 22967 : CAACACTCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCTAATGTCTAGCATAT : 23026 135 : leIleCysPheSerGlyPheSerLeuLeuVal >>>> Target Intron 2 >>>> : 145 !!|||||||||! !|||!:!..!:!!|||:!! 492 bp euIleCysPheIleGlyTyrGlnValLeuLeu++ + 23027 : TAATTTGCTTCATCGGGTATCAAGTACTCCTGgt.........................a : 23549 146 : GlySerArgCysCysGln<->LysCysIlePheAlaValGlnPheValGlySerLeuTh : 163 !!.! !! ! !:!! ::: ! !|||||| ! !!.:!! !.!!:!!!: +IleLysLeuSerPheGluSerArgValAlaPheAlaCysPheLeuMetMetGlyMetSe 23550 : gATAAAGTTATCATTTGAATCGCGCGTTGCTTTCGCGTGCTTCTTGATGATGGGCATGAG : 23608 164 : rGlnLeuLeuIleTyrThrTrpThrProAsnAspIleIleValArgSerAlaAlaIleSe : 183 !||||||! !!!:!:!|||!::!:! !:!! !|||! !..!..!||| ! !|||:! rGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIleAl 23609 : TCAACTATGGATGTTCACGTATAGTTGCGATTGCATAACAACAGAAAGCCTGAACATCGC : 23668 184 : rAspAlaAlaTyrAsnSerLysTrpHisLeuLeuProGlyAsnGlySerGlyLysSerLe : 203 !!!::!!!.!||| !.!! !||| !|||||| !:!! !! !|||||| !|| aGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeuLe 23669 : TGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATGGACAAATTTGGAAAACTGCT : 23728 204 : uArgGluGlyLeuIleMetIleThrIleArgAlaArgArgLeuCysAlaLeuAlaAlaGl : 223 ||||:!!! !||| !|||:!!! !:!:||||||||||||! !! !||||||.!!||| ! uArgLysGluLeuGlnMetLeuIleLeuArgAlaArgArgProSerAlaLeuThrAlaCy 23729 : AAGAAAAGAATTGCAAATGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACTGCCTG : 23788 224 : yHisPheAlaValThrSerLeuAspThrPheThrArg : 235 ! ||| ! !! !||||||!!:|||||||||!:! sGlyPhePheSerIleSerLeuGluThrPheThrLys 23789 : TGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAG : 23826 vulgar: CbirOr155PSE 23 235 . KQ414828.1 22385 23826 + 209 M 8 24 5 0 2 I 0 312 3 0 2 M 13 39 G 1 0 M 63 189 G 1 0 M 35 105 5 0 2 I 0 488 3 0 2 M 6 18 G 0 3 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22386 23826 209 + . gene_id 1 ; sequence CbirOr155PSE ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22386 22409 . + . KQ414828.1 exonerate:protein2genome:local exon 22386 22409 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22410 22411 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 22410 22725 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22724 22725 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22726 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22726 23058 . + . insertions 0 ; deletions 2 KQ414828.1 exonerate:protein2genome:local splice5 23059 23060 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 23059 23550 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 23549 23550 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 23551 23826 . + . KQ414828.1 exonerate:protein2genome:local exon 23551 23826 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22386 23826 209 + . alignment_id 1 ; Query CbirOr155PSE ; Align 22386 24 24 ; Align 22726 32 39 ; Align 22765 46 189 ; Align 22954 110 105 ; Align 23551 145 18 ; Align 23572 151 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr155PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 23 -> 146 Target range: 32464 -> 33143 24 : SerProTyrTyrGluIleAlaTyrThrLeuPro >>>> Target Intron 1 >>>> : 35 !!!|||||||||||||||...|||! !:!!! ! 307 bp ThrProTyrTyrGluIleThrTyrIleIleGln++ 32465 : ACAccatattatgaaattacttACATAATACAGgt......................... : 32500 36 : IleMetAlaGlnLeuGluAsnValIleCysIlePheCysPheAspAsn<-><->PheV : 52 !:!::!! !! !:!! !! !:!:||| !.!!|||||||||||| |||: ++AlaLeuSerValTyrGlnValGlyValCysTyrLeuCysPheAspAsnIlePhePheI 32501 : agGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCTttgataacatttttttca : 32862 53 : alArgUnkValHisValAlaAlaGlnLeuLysIleLeuAsnArgLysValAspIleIleT : 72 :: :!!|||||||||!.!|||!!!:::||||||.!. !!:!:!!! !! !:!:: leMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnValS 32863 : ttatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTGT : 32922 73 : hrGluLysCysIleGluAspSerAlaAsnGluLysCysGlnProGluIleAspSerIleG : 92 !!! ! !! !! !.!::!|||!!:!!. ... !!! ! ! ! !| erGlyLeuSerGluIleValLysSerAsnAspAsnThrSerThrAlaGluLeuTyrSerG 32923 : CAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACAAGCACGGCTGAATTATACTCAG : 32982 93 : luTrpValLeuLysLysLeuGlnAsnCysValGlnGlnHisLeuThrLeuIleIleThrT : 112 || !! !! |||!!!:!!||||||:!!|||||||||! !.!!||| ||| : luLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeu---IleGluP 32983 : AGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTa---attgaat : 33039 113 : yrValArgAsnMetGlnArgValPheAlaIleIleLeuLeuGlyGlnUnkProLeuSerS : 132 :: ... ::::!!..!||||||.!!:!!|||:!!||||||||| ! !:!!! !| heCysGluIleLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMetPheS 33040 : tttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTAATGTTTA : 33099 133 : erValIleIleCysPheSerGlyPheSerLeuLeuValGlySer : 146 ||:!!||||||||||||:!!|||!:!..!:!!|||:!!! !||| erIleIleIleCysPheAlaGlyTyrGluValLeuLeuValSer 33100 : GCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGGTGAGT : 33143 vulgar: CbirOr155PSE 23 146 . KQ414828.1 32464 33143 + 162 M 11 33 5 0 2 I 0 303 3 0 2 M 16 48 G 0 6 M 58 174 G 1 0 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32465 33143 162 + . gene_id 2 ; sequence CbirOr155PSE ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32465 32497 . + . KQ414828.1 exonerate:protein2genome:local exon 32465 32497 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32498 32499 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32498 32804 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32803 32804 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32805 33143 . + . KQ414828.1 exonerate:protein2genome:local exon 32805 33143 . + . insertions 6 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 32465 33143 162 + . alignment_id 2 ; Query CbirOr155PSE ; Align 32465 24 33 ; Align 32805 35 48 ; Align 32859 51 174 ; Align 33033 110 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr155PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 23 -> 146 Target range: 37528 -> 38207 24 : SerProTyrTyrGluIleAlaTyrThrLeuPro >>>> Target Intron 1 >>>> : 35 !!!|||||||||||||||...|||! !:!!! ! 307 bp ThrProTyrTyrGluIleThrTyrIleIleGln++ 37529 : ACAccatattatgaaattacttACATAATACAGgt......................... : 37564 36 : IleMetAlaGlnLeuGluAsnValIleCysIlePheCysPheAsp<-><->AsnPheV : 52 !:!::!! !! !:!! ! ! ||| !.!!||||||||| |||: ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIlePhePheI 37565 : agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatttttttca : 37926 53 : alArgUnkValHisValAlaAlaGlnLeuLysIleLeuAsnArgLysValAspIleIleT : 72 :: :!!|||||||||!.!|||!!!:::||||||.!. !!:!:!!! !! !:!:: leLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnValS 37927 : ttttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTGT : 37986 73 : hrGluLysCysIleGluAspSerAlaAsnGluLysCysGlnProGluIleAspSerIleG : 92 !!! ! !! !! !.!::!!:!|||!!. ... !!!!: ! ! ! !| erGlyLeuSerGluIleValLysSerSerGluAsnProSerThrAspGluLeuTyrSerG 37987 : CAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAATTATACTCAG : 38046 93 : luTrpValLeuLysLysLeuGlnAsnCysValGlnGlnHisLeuThrLeuIleIleThrT : 112 || !! !! |||!!!:!!||||||:!!|||||||||! !.!!||| ||| !! luLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeu---IleGluP 38047 : AGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTA---ATTGAAT : 38103 113 : yrValArgAsnMetGlnArgValPheAlaIleIleLeuLeuGlyGlnUnkProLeuSerS : 132 :! ! !!..:!::!!..!||||||.!!:!!||| !||||||||| ! !:!!! !| heCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnValLeuMetPheS 38104 : TTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCTAATGTTTA : 38163 133 : erValIleIleCysPheSerGlyPheSerLeuLeuValGlySer : 146 ||:!!:!!||||||||| !! !!:!..! !|||:!!! !||| erIleLeuIleCysPheValValTyrGlnAlaLeuLeuValSer 38164 : GCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTGGTGAGT : 38207 vulgar: CbirOr155PSE 23 146 . KQ414828.1 37528 38207 + 132 M 11 33 5 0 2 I 0 303 3 0 2 M 15 45 G 0 6 M 59 177 G 1 0 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37529 38207 132 + . gene_id 3 ; sequence CbirOr155PSE ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37529 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37529 37561 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 38207 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 38207 . + . insertions 6 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 37529 38207 132 + . alignment_id 3 ; Query CbirOr155PSE ; Align 37529 24 33 ; Align 37869 35 45 ; Align 37920 50 177 ; Align 38097 110 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr155PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 23 -> 144 Target range: 2951 -> 3717 24 : SerProTyrTyrGluIleAlaTyrThrLeuPro >>>> Target Intron 1 >>>> : 35 !!!||||||||||||||| :::|||:!!! ! 406 bp ThrProTyrTyrGluIleLeuPheThrIleGln++ ++ 2952 : ACACCATactatgaaatattatttacgaTACAGgt.........................ag : 3389 36 : IleMetAlaGlnLeuGluAsnValIleCysIlePheCysPheAspAsnPheValArgUnkVa : 55 |||.!. ! !:!! ! ! !||| !! !.!!|||.!!|||||||||:!! !! :! IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheLeuCysMetIl 3390 : ATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTCTGTGCATGAT : 3451 56 : lHisValAlaAlaGlnLeuLysIleLeuAsnArgLysValAspIleIleThrGluLysCysI : 76 !:!!:!! !.!! !:!!.!!! !! !:!! ! :!: !.!! ! !! eAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnValCysGlyA 3452 : CAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAATGTGTGCGGTG : 3514 77 : leGluAspSerAlaAsnGluLysCysGlnProGluIleAspSerIleGluTrpValLeuLys : 96 !.!.!!: !!::::::::: ::: ..!!:! !!: !! ! laAsnGluArgSerAspLysIleSerLysLysThrProSerAsnSerAspGluCysTyrAla 3515 : CAAACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCT : 3574 97 : LysLeuGlnAsnCysValGlnGlnHisLeuThrLeuIleIleThrTyrValArgAsnMetGl : 117 |||!!!:!!||||||:!!|||||||||! !.!!||| ||| !||| !!.!!!.:!:|| LysPheLysAsnCysIleGlnGlnHisGlnAlaLeu---IleGluTyrCysAsnLysLeuGl 3575 : AAGTTCAAAAATTGCATTCAACAGCATCAAGCACTC---ATAGAATACTGTAACAAACTTCA : 3634 118 : nArgValPheAlaIleIleLeuLeuGlyGlnUnkProLeuSerSerValIleIleCysPheS : 138 |..!||||||!.!|||.!!:!!|||!.!||| !|||! !|||:!!:!!!!:|||.!!. nGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuA 3635 : AGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCG : 3697 139 : erGlyPheSerLeuLeuVal : 144 .!|||!:!! !:!!:!!||| spGlyTyrLeuValMetVal 3698 : ATGGATATTTGGTGATGGTT : 3717 vulgar: CbirOr155PSE 23 144 . KQ414828.1 2951 3717 + 128 M 11 33 5 0 2 I 0 402 3 0 2 M 74 222 G 1 0 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2952 3717 128 + . gene_id 4 ; sequence CbirOr155PSE ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2952 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2952 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3717 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3717 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 2952 3717 128 + . alignment_id 4 ; Query CbirOr155PSE ; Align 2952 24 33 ; Align 3391 35 222 ; Align 3613 110 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr155PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 5 -> 144 Target range: 17839 -> 18381 6 : AsnValThrGluLysIleLeuProPheLysLeuUnkLeuAspLeu<->AlaArgHisSer : 24 ||| :!!|||!:!||||||||||||!!.:!! :!!:!!||| ! ! !!! AsnGluSerGluArgIleLeuProPheAsnMetTrpValAsnLeuProLeuSerMetThr 17840 : aatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTCAACTTGCCATTATCAATGACG : 17897 25 : ProTyrTyrGluIleAlaTyrThrLeuPro >>>> Target Intron 1 >>>> I : 35 |||||||||||||||...::::::|||! ! 110 bp : ProTyrTyrGluIleThrPheSerLeuGln++ ++V 17898 : CCATATTACgaaataactttttcattaCAGgt.........................agg : 18040 36 : leMetAlaGlnLeuGluAsnValIleCysIlePheCysPheAspAsnPhe<-><->ValA : 53 :!:!!:!!! !! !.!.! !! !:!: !! !|||||||||||||||||| ::!! alLeuSerLeuTyrHisIleGlyValSerTyrPheCysPheAspAsnPheLeuCysIleM 18041 : tTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgcttcgacaattttttatgcatCA : 18100 54 : rgUnkValHisValAlaAlaGlnLeuLysIleLeuAsnArgLysValAspIleIleThrG : 73 ! :!!|||!.!|||.!!|||!!!::!:!!|||.!. !::!:!!! ! !!!:|||! etAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnTyrArgMetAlaAsnMetThrA 18101 : TGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAATACCGAATGGCGAATATGACCG : 18160 74 : luLysCysIleGluAspSerAlaAsnGluLysCysGlnProGluIleAspSerIleGluT : 93 !: ! :::::: ......... :!! !!...:!:..!||| ! spLeuLysAspLysGluArgLysGluArgAsnMetLysThrSerValSerSerAlaCysP 18161 : ATTTAAAGGacaaagagaggaaagagagaaatatgaAGACAAGTGTGAGTTCGGCGTGCT : 18220 94 : rpValLeuLys<-><-><->LysLeuGlnAsnCysValGlnGlnHisLeuThrLeuIleI : 110 ::!.! !:!! |||:!!:!!! !:!!::!||||||! !!.!||| | heAlaThrGluCysTyrAsnValLeuLysAspTyrIleArgGlnHisGlnAsnLeu---I 18221 : TTGCAACAGAATGTTACAACGTTCTCAAAGATTATATCAGACAGCATCAGAACCTG---A : 18277 111 : leThrTyrValArgAsnMetGlnArgValPheAlaIleIleLeuLeuGlyGlnUnkProL : 130 ||.!!||| !!.!!!.:!::!!!:!|||||| !||||||:!!||||||||| !: leAlaTyrCysAsnLysLeuGluLysValPheAsnIleIleValLeuGlyGlnLeuLeuM 18278 : TTGCTTATTGCAACAAACTCGAGAAAGTGTTCAATATCATTGTTCTGGGGCAATTGTTAA : 18337 131 : euSerSerValIleIleCysPheSerGlyPheSerLeuLeuVal : 144 !!! !|||:!!:!:||||||.!!..!||||||..!:!!|||:!! etPheSerMetLeuIleCysLeuAspGlyPheGlnIleLeuMet 18338 : TGTTCAGCATGTTGATCTGTCTCGATGGATTTCAGATACTTATG : 18381 vulgar: CbirOr155PSE 5 144 . KQ414828.1 17839 18381 + 122 M 15 45 G 0 3 M 14 42 5 0 2 I 0 106 3 0 2 M 17 51 G 0 6 M 45 135 G 0 9 M 12 36 G 1 0 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17840 18381 122 + . gene_id 5 ; sequence CbirOr155PSE ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17840 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17840 17929 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18381 . + . insertions 15 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 17840 18381 122 + . alignment_id 5 ; Query CbirOr155PSE ; Align 17840 6 45 ; Align 17888 21 42 ; Align 18040 35 51 ; Align 18097 52 135 ; Align 18241 97 36 ; Align 18277 110 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr155PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 160 -> 235 Target range: 28556 -> 28781 161 : SerLeuThrGlnLeuLeuIleTyrThrTrpThrProAsnAspIleIleValArgSerAla : 180 .!!:!!!:!||||||! !!!:!:!|||!::!:! !:!! !|||! !..!..!||| ! GlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeu 28557 : GGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTG : 28614 181 : AlaIleSerAspAlaAlaTyrAsnSerLysTrpHisLeuLeuProGlyAsnGlySerGly : 200 !|||:!!!!::!!!.!||| !.!! !||| !|||||| ::: ||| AsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGly 28615 : AACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttgga : 28674 201 : LysSerLeuArgGluGlyLeuIleMetIleThrIleArgAlaArgArgLeuCysAlaLeu : 220 ||| ||||||:!!! !||| !:!!:!!! !:!:||||||||||||! !! !:!!||| LysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeu 28675 : aaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTG : 28734 221 : AlaAlaGlyHisPheAlaValThrSerLeuAspThrPheThrArg : 235 .!!||| !! ||| ! !! !||||||!!:|||||||||!:! ThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys 28735 : ACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAG : 28781 vulgar: CbirOr155PSE 160 235 . KQ414828.1 28556 28781 + 113 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28557 28781 113 + . gene_id 6 ; sequence CbirOr155PSE ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28557 28781 . + . KQ414828.1 exonerate:protein2genome:local exon 28557 28781 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28557 28781 113 + . alignment_id 6 ; Query CbirOr155PSE ; Align 28557 161 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr155PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 160 -> 235 Target range: 38532 -> 38757 161 : SerLeuThrGlnLeuLeuIleTyrThrTrpThrProAsnAspIleIleValArgSerAla : 180 .!!:!!!:!||||||! !!!:!:!|||!::!:! !:!! !|||! !..!..!||| ! GlyValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeu 38533 : GGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTG : 38590 181 : AlaIleSerAspAlaAlaTyrAsnSerLysTrpHisLeuLeuProGlyAsnGlySerGly : 200 !|||:!!!!::!!!.!||| !.!! !||| !|||||| ::: ||| AsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGly 38591 : AACATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttgga : 38650 201 : LysSerLeuArgGluGlyLeuIleMetIleThrIleArgAlaArgArgLeuCysAlaLeu : 220 ||| ||||||:!!! !||| !:!!:!!! !:!:||||||||||||! !! !:!!||| LysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeu 38651 : aaactgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTG : 38710 221 : AlaAlaGlyHisPheAlaValThrSerLeuAspThrPheThrArg : 235 .!!||| !! ||| ! !! !||||||!!:|||||||||!:! ThrAlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys 38711 : ACTGCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAG : 38757 vulgar: CbirOr155PSE 160 235 . KQ414828.1 38532 38757 + 113 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38533 38757 113 + . gene_id 7 ; sequence CbirOr155PSE ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38533 38757 . + . KQ414828.1 exonerate:protein2genome:local exon 38533 38757 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38533 38757 113 + . alignment_id 7 ; Query CbirOr155PSE ; Align 38533 161 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr168 Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 6 -> 97 Target range: 5273 -> 5000 7 : GluLysLeuIleAlaPheLeuLysThrHisLeuPhePheAlaCysCysTrpProLeuArgSe : 27 |||!:! !|||:!!.!!:!! ! ..! ! ! !|||.!!|||||||||||||||! !|| GluArgAlaIleSerLeuValHisValIleThrAlaPheThrCysCysTrpProLeuProSe 5273 : GAAAGAGCCATCTCCCTTGTCCACGTTATCACGGCTTTTACCTGCTGTTGGCCTCTTCCCTC : 5213 28 : rThrAlaThrArgTyrGluLysThrCysAspMetIlePheArgPhePheSerMetValHisG : 48 ||||||||||!:!! ! ! ! ! !! !|||.!.|||! !||| !:!::!!:!!! rThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuArgSerPheLeuLeuLeuAsnA 5212 : GACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGAGATCTTTCCTGCTTTTAAACG : 5150 49 : lyThrValMetIleValSerIleLeuTyrThrIleTyrIleAsnProSerAsnLeuLeuLeu : 68 .! !|||:!!.!!:!! !!:!:||||||.!!:!::!!:!::!!! !!:!:!! ! ! ! laLeuValLeuPheLeuProLeuLeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsn 5149 : CGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAAC : 5090 69 : IleMetArgLeuCysCysGlnLeuCysThrThrThrGluValProLeuGlnIleMetCysTy : 89 :!! !!:! !..!|||! ! ! !.!! ...:::::: ...||| !.!. !! ValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCy 5089 : GTCGCGAAAGCTGCTTGCCTGACGCTTGCCctcgtgcaaatatttttccagacTTTCGTTTG : 5027 90 : rThrMetGlnTyrAspArgLeuGln : 97 !! ! |||||||||!.!!!!||| sIleGlyGlnTyrAspHisPheGln 5026 : CATCGGCCAATACGATCATTTTCAG : 5001 vulgar: CbirOr168 6 97 . LHQN01020543.1 5273 5000 - 116 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 5001 5273 116 - . gene_id 1 ; sequence CbirOr168 ; gene_orientation . LHQN01020543.1 exonerate:protein2genome:local cds 5001 5273 . - . LHQN01020543.1 exonerate:protein2genome:local exon 5001 5273 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 5001 5273 116 - . alignment_id 1 ; Query CbirOr168 ; Align 5274 7 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr169 Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 146 Query range: 8 -> 106 Target range: 5273 -> 4979 9 : AspArgValIleAlaPheLeuArgValTyrLeuAlaLeuAlaCysCysTrpProLeuProPr : 29 !!:|||!.!|||:!!.!!:!!!.!||| ! !|||!!!.!!|||||||||||||||||| ! GluArgAlaIleSerLeuValHisValIleThrAlaPheThrCysCysTrpProLeuProSe 5273 : GAAAGAGCCATCTCCCTTGTCCACGTTATCACGGCTTTTACCTGCTGTTGGCCTCTTCCCTC : 5213 30 : oAspAlaThrLysPheGlnArgLeuCysArgArgIleLeuArgTyrPheCysLeuAlaAsnS : 50 ! |||||||||! !! ! !||| !!:!|||||||||! !||| ||| !|||: rThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuArgSerPheLeuLeuLeuAsnA 5212 : GACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGAGATCTTTCCTGCTTTTAAACG : 5150 51 : erIleThrIleIlePheSerGlyValTrpThrIleSerLysHisGlyAspAspAlaPheMet : 70 !!:!!..!:!:.!!.!. !! !:!!!::.!!:!: ! !||| !!:!!|||||| ! laLeuValLeuPheLeuProLeuLeuTyrAlaLeuHisValHisArgAsnAspAlaGluAsn 5149 : CGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTGCATCGAAACGACGCCGAGAAC : 5090 71 : ValMetArgValGlyCysGlnMetSerAlaAlaAlaGlnIleProLeuGlnMetIleLeuPh : 91 ||| !!:!!.!!.!|||! !! ! !||| ...|||||| ...||| .!!:!!! ValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPheValCy 5089 : GTCGCGAAAGCTGCTTGCCTGACGCTTGCCctcgtgcaaatatttttccagacTTTCGTTTG : 5027 92 : eAlaMetGlnAspGluArgMetGlnValLysMetPheMetLeuVal : 106 ! ! ||| !!!!:!.!.!.||||||!:!:!:.!!:!:! !:!! sIleGlyGlnTyrAspHisPheGlnValArgLeuIleLeuArgIle 5026 : CATCGGCCAATACGATCATTTTCAGGTAAGATTAATTTTACGCATA : 4980 vulgar: CbirOr169 8 106 . LHQN01020543.1 5273 4979 - 146 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4980 5273 146 - . gene_id 1 ; sequence CbirOr169 ; gene_orientation . LHQN01020543.1 exonerate:protein2genome:local cds 4980 5273 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4980 5273 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4980 5273 146 - . alignment_id 1 ; Query CbirOr169 ; Align 5274 9 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr154 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 275 Query range: 243 -> 403 Target range: 1682109 -> 1683075 244 : LysLysLeuGlnAsnCysIleGlnGlnHisLeuThrLeuIleCysTyrValArgAs : 262 |||:!!!!!:!!.!.|||:!!||| ! |||! ! !|||:!!! ||||||..... LysGluPheLysGluCysValGlnTyrHisHisLeuLeuLeuSerTyrValGluLy 1682110 : AAAGAGTTCAAGGAGTGCGTACAGTATCATCATTTGCTTCTTTCGtacgtggaaaa : 1682164 263 : nMetGlnArgAlaPheAlaValIleLeuLeuGlyGlnLeuLeuLeuSerSerIleV : 281 .:::::: ..!|||..!||| |||:!! !|||||||||:!!|||||||||| sLeuGluTyrValPheCysValProLeuMetIleGlnLeuLeuValSerSerIleV 1682165 : attggaatacgTATTTTGTGTCCCGTTGATGATTCAATTGCTGGTGTCTAGCATAG : 1682221 282 : alIleCysPheGlyGlyPheGlnPhe<->Leu >>>> Target Intron 1 > : 291 ||:!:||| !!..!|||||||||.!. ||| 285 bp alLeuCysValSerGlyPheGlnLeuSerLeu++ 1682222 : TTCTGTGCGTCTCGGGGTTTCAACTATCATTGgt...................... : 1682256 292 : >>> GluThrAsnValAlaValArgLysPheLeuPheAlaCysHisPheValGly : 307 ! !!.!..!||| !:!!!:!::!!!.|||||| ! !:!!|||:!!||| ++ValAsnGlyValLeuMetLysArgLeuLeuPheLeuAsnTyrPheLeuGly 1682257 : ...agGTGAACGGTGTATTGATGAAACGATTGTTGTTCCTAAATTACTTTCTCGGT : 1682587 308 : GlyLeuIleGlnLeuPheIleTyrThrTrpThrCysAsnAspIleIleIleGlnSe : 326 |||:!!||||||:::|||::: ||| !.!||||||||||||!!: ||||| GlyValIleGlnIlePheLeuIleThrLeuAsnCysAsnAspIleMetGluGlnSe 1682588 : GGAGTGATacagatatttttaataacccTAAATTGCAACGACATAATGGAGCAAAG : 1682644 327 : rThrAlaIleSerAspAlaAlaTyrAsnSerLysTrpTyrLeuLeuSerAsnAsnA : 345 | !||||||.!! ||| !|||!:!!!!!!.||| ! ! ||| rGlyAlaIleGlyThrAlaIleTyrSerCysAsnTrpGluArgAsnValTyrAsnH 1682645 : TGGCGCTATAGGAACAGCGATCTACAGTTGTAATTGGGAGAGGAAtgtttataatc : 1682701 346 : spProGlyLysThrLeuArgLysGlyLeuIleMetIleMetIleArgAlaArgArg : 363 !!!!||||||! !:!!!!:!!::!!|||:!!||||||!:!||| is---PheTyrGlnPheArgLysAspMetMetIleValMetValArgAlaLysArg 1682702 : at---ttttaccAGTTCAGAAAGGATATGATGATTGTAATGGTACGAGCGAAACGT : 1682752 364 : ProCysThrLeuThrAlaGlyTyrValThrValIleSerLeuAspThrPheMetGl : 382 |||||| !:!!:!!|||!.! ! !! ! !|||||||||!!::!!|||! ! ProCysTyrIleSerAlaAlaLysPhePheProIleSerLeuGluSerPheThrLy 1682753 : CCTTGCTACATTTCAGCAGCGAAATTCTTTCCAATCTCCCTTGAATCGTTCACGAa : 1682809 383 : y >>>> Target Intron 2 >>>> IleLeuSerLysAlaMetSerTyrPh : 391 201 bp :!:|||||| !.!! ||||||!: s++ ++ValLeuSerAlaThrAlaSerTyrTy 1682810 : ggt.........................agGTGTTAAGTGCAACAGCATCTTATTA : 1683037 392 : eThrLeuLeuArgGlnMetSerGluGluGluIleLys : 403 !|||||||||||| !|||..! !!!:! |||:!! rThrLeuLeuArgThrMetGluMetAspValIleGlu 1683038 : TACACTGCTGCGTACAATGGAAATGGACGTCATAGAG : 1683075 vulgar: CbirOr154 243 403 . KQ414915.1 1682109 1683075 + 275 M 46 138 G 0 3 M 1 3 5 0 2 I 0 281 3 0 2 M 55 165 G 1 0 M 36 108 5 0 2 I 0 197 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682110 1683075 275 + . gene_id 1 ; sequence CbirOr154 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1682110 1682253 . + . KQ414915.1 exonerate:protein2genome:local exon 1682110 1682253 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1682254 1682255 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1682254 1682538 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1682537 1682538 . + . intron_id 0 ; splice_site "aG" KQ414915.1 exonerate:protein2genome:local cds 1682539 1682811 . + . KQ414915.1 exonerate:protein2genome:local exon 1682539 1682811 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1682812 1682813 . + . intron_id 2 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1682812 1683012 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1683011 1683012 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1683013 1683075 . + . KQ414915.1 exonerate:protein2genome:local exon 1683013 1683075 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1682110 1683075 275 + . alignment_id 1 ; Query CbirOr154 ; Align 1682110 244 138 ; Align 1682251 290 3 ; Align 1682539 291 165 ; Align 1682704 347 108 ; Align 1683013 383 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr154 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 267 Query range: 245 -> 400 Target range: 1712089 -> 1713333 246 : LeuGlnAsnCysIleGlnGlnHisLeuThrLeuIleCysTyrValArgAsnMetGl : 264 !!!:!!!..|||:!!!::||||||! !:!!|||!!:..!!:! ......::::: PheLysArgCysValArgGlnHisGlnSerLeuMetAlaPheCysGluLysLeuGl 1712090 : TTCAAAAGATGCGTTCGTCAACATCAATCTCTGATGGCTTTCTgcgagaaactcga : 1712144 265 : nArgAlaPheAlaValIleLeuLeuGlyGlnLeuLeuLeuSerSerIleValIleC : 283 :... |||::!:!!|||:!!|||||||||||||||:!!! !|||||| !!!!:| uGluMetPheSerMetIleIleLeuGlyGlnLeuLeuValPheSerIlePheMetC 1712145 : agaaatgTTCAGTATGATTATACTGGGGCAATTGTTAGTGTTCAGTATTTTTATGT : 1712201 284 : ysPheGlyGlyPheGlnPheLeuGluThrAsnValAlaValArgLysPheLeuPhe : 301 ||.!!! !! !! !||| ! ||| !..!!:! :!!:!!!!!|||.!.:!!||| ysLeuAspValCysGlnValLeuLeuValSer---SerIleSerLysIleIlePhe 1712202 : GTCTCGACGTGTGCCAAGTACTTCTGGTTAGT---TCAATTAGCAAAATAATCTTC : 1712252 302 : AlaCysHis >>>> Target Intron 1 >>>> PheValGlyGlyLeuIle : 310 ..!!! ||| 148 bp ...!.!||| !!:!! ! Cys***His++ +-LeuAlaGlyCysMetCys 1712253 : TGTTGACACgt.........................acctAGCGGGATGTATGTGT : 1712427 311 : GlnLeuPheIleTyrThrTrpThrCysAsnAspIleIleIleGlnSerThrAlaIl : 329 ||||||.!.!!:!:!|||!::!:!|||:!! !||||||! :!!||| ! !:! GlnLeuLeuMetPheThrTyrSerCysAspCysIleIleThrGluSerLeuAsnVa 1712428 : CAATTGCTGATGTTTACGTACAGCTGCGATTGTATAATAACGGAAAGTTTGAACGT : 1712484 330 : eSerAspAlaAlaTyrAsnSerLysTrpTyrLeuLeuSerAsnAsnAspProGlyL : 348 :!!!!!:|||!.!|||:!!.!! !||| ! !||| !!! !:! !|||! lThrGluAlaValTyrAspGlyProTrpProArgLeuProMetSerThrArgGlyA 1712485 : GACGGAAGCGGTGTACGATGGACCATGGCCACGTTTGCCAATGAGCACGAGAGGAA : 1712541 349 : ysThrLeuArgLysGlyLeuIleMetIleMetIleArgAlaArgArgProCysThr : 366 :!! !:!!||||||! !||||||:!::!!!!:||||||:!!||| !|||||| ! rgMetIleArgLysAspLeuIleLeuValIleIleArgSerArgValProCysCys 1712542 : GAATGATAAGGAAGGATTTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTGC : 1712595 367 : LeuThrAlaGlyTyrValThrValIleSerLeuAspThrPheMetGly >>>> T : 383 ||||||||| !! !! !||||||||||||!!:|||!:!! ! ! LeuThrAlaArgGlyPhePheValIleSerLeuGluThrTyrThrLys++ 1712596 : TTGACCGCCAGAGGATTCTTCGTAATATCTTTGGAAACGTATACGAAGgt...... : 1712648 384 : arget Intron 2 >>>> IleLeuSerLysAlaMetSerTyrPheThrLeuLe : 394 634 bp :!!:!!|||! !|||:!!||||||||||||||||| ++ValIleSerThrAlaValSerTyrPheThrLeuLe 1712649 : ...................agGTTATAAGTACAGCAGTGTCGTACTTCACACTGTT : 1713313 395 : uArgGlnMetSerGluGlu : 400 ||||||| ! !|||||| uArgGlnArgIleGluGlu 1713314 : AAGGCAACGTATAGAGGAA : 1713333 vulgar: CbirOr154 245 400 . KQ414915.1 1712089 1713333 + 267 M 48 144 G 1 0 M 10 30 5 0 2 I 0 144 3 0 2 M 78 234 5 0 2 I 0 630 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712090 1713333 267 + . gene_id 2 ; sequence CbirOr154 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1712090 1712263 . + . KQ414915.1 exonerate:protein2genome:local exon 1712090 1712263 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1712264 1712265 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712264 1712411 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1712410 1712411 . + . intron_id 0 ; splice_site "ac" KQ414915.1 exonerate:protein2genome:local cds 1712412 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712412 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713333 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713333 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712090 1713333 267 + . alignment_id 2 ; Query CbirOr154 ; Align 1712090 246 144 ; Align 1712234 295 30 ; Align 1712412 305 234 ; Align 1713280 383 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr154 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 179 -> 287 Target range: 1707370 -> 1707694 180 : ThrIleGlnSerPheSerThrIleHisSerGlyIleCysThrCysCysPheAspAs : 198 :!!:!!||| !|||! !..!!!::!! ! !!||| !! ! !|||.!!||||| SerLeuGlnValPheIleValMetTyrValCysIleSerTyrLeuCysIleAspAs 1707371 : TCGCTACAGGTTTTTATCGTAATGTACGTTTGCATAAGCTACCTTTGTATCGACAA : 1707425 199 : nPheValSerThrPheAsnIleHisValAlaAlaGlnLeuLysIleLeuAlaHisL : 217 ||||:!!!!!! !.!!|||:!!|||..!|||.!!|||!!!::!|||||| !:!!! nPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrA 1707426 : TTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACA : 1707482 218 : ysValGluValIleValGluLysCysIleGluAsnThrValAsnGlyGluCysPro : 235 :!:!!..! !:!: !! ! ! !...!:: ...::: rgLeuSerAsnValCysGlyAlaAsnGluArgSerAspLysIleSerLysLysThr 1707483 : GACTGTCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaaaca : 1707536 236 : ProAsnIleMetGluMetAlaLeuLysLysLeuGlnAsnCysIleGlnGlnHisLe : 254 |||::!! ! !!!: ..!! ! |||!!!:!!||||||||||||||||||! ProSerAsnSerAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGl 1707537 : CCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCA : 1707593 255 : uThrLeuIleCysTyrValArgAsnMetGlnArgAlaPheAlaValIleLeuLeuG : 273 !.!!|||||| ||| !!.!.!.:!:|||..!!.!|||!.!:!!.!!:!!|||! nAlaLeuIleGluTyrCysAsnGluLeuGlnGluValPheGlyLeuPheValLeuA 1707594 : AGCACTCATAGAATACTGTAACGAACTTCAAGAGGTGTTCGGTTTATTTGTGCTTG : 1707650 274 : lyGlnLeuLeuLeuSerSerIleValIleCysPheGlyGlyPhe : 287 .!|||:!!||||||! !|||:!::!!!!:|||.!!! !|||!:! laGlnValLeuLeuPheSerLeuLeuMetCysLeuAspGlyTyr 1707651 : CACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGGATAT : 1707694 vulgar: CbirOr154 179 287 . KQ414915.1 1707370 1707694 + 164 M 108 324 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707371 1707694 164 + . gene_id 3 ; sequence CbirOr154 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1707371 1707694 . + . KQ414915.1 exonerate:protein2genome:local exon 1707371 1707694 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1707371 1707694 164 + . alignment_id 3 ; Query CbirOr154 ; Align 1707371 180 324 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr154 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 159 -> 224 Target range: 1681761 -> 1682076 160 : LeuProPheLysLeuTrpPheAspPheProTyrHisSerProTyrTyrGluValTh : 178 !!!||||||!:!:!!!:: ! ! !!! ! !!!||||||||||||::: PheProPheArgValPheAsnLeuProThrSerLeuThrProTyrTyrGluIleLe 1681762 : TTTCCATTCAGAGTGTTTAACTTGCCTACGTCTTTGACGCCgtattatgaaatatt : 1681816 179 : rTyrThrIleGln >>>> Target Intron 1 >>>> SerPheSerThrIl : 187 :::..!|||:!! 120 bp !!!!!.|||..!:! uPheValIleGlu++ ++ThrLeuSerValVa 1681817 : gttcGTGATAGAGgt.........................agACATTATCTGTGGT : 1681963 188 : eHisSerGlyIleCysThrCysCysPheAspAsnPheValSerThrPheAsnIleH : 206 :||||||||||||||| !||||||||||||||||||:!!!!!! !.!.!:!!!:| lHisSerGlyIleCysPheCysCysPheAspAsnPheLeuCysIleLeuSerMetH 1681964 : GCATTCGGGAATTTGTTTCTGTTGTTTCGACAATTTCCTGTGTATACTGAGCATGC : 1682020 207 : isValAlaAlaGlnLeuLysIleLeuAlaHisLysValGluValIleValGluLys : 224 |||||!.!!.!|||!!!||||||||| !:!!|||:!!:!!..!:!!:!!...:!! isValGlyGlyGlnPheLysIleLeuGlnAsnLysLeuGlnThrValLeuSerGlu 1682021 : ACGTCGGTGGACAGTTTAAGATTTTACAAAACAAACTCCAAACAGTATTGAGTGAG : 1682074 vulgar: CbirOr154 159 224 . KQ414915.1 1681761 1682076 + 157 M 23 69 5 0 2 I 0 116 3 0 2 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681762 1682076 157 + . gene_id 4 ; sequence CbirOr154 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681762 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681762 1681830 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682076 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682076 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681762 1682076 157 + . alignment_id 4 ; Query CbirOr154 ; Align 1681762 160 69 ; Align 1681951 183 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr154 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 0 -> 67 Target range: 1680268 -> 1680469 1 : MetThrGlnSerLysGluTyrArgSerValArgIleThrArgLeuPheMetLysMe : 19 :!:|||.!.!!!! !:!!||| !|||:!!|||:!!||||||:!!.!!||||||!! ValThrAspThrThrLysTyrPheSerIleArgLeuThrArgIleLeuMetLysIl 1680269 : GTCACAGACACGACGAAATACTTTTCCATTCGACTCACACGGATACTCATGAAAAT : 1680323 20 : tValGlyLeuTrpTyrValGluThrProArgGluArgLeuLeuLeuArgAlaAlaP : 38 ::!!|||!!!||| !!|||:!!||| !||||||!:!|||:!!||||||!.! !! eIleGlyPheTrpAsnValGlnThrArgArgGluGlnLeuIleLeuArgValAsnT 1680324 : CATAGGCTTCTGGAATGTTCAGACAAGAAGGGAACAGCTGATATTGCGAGTCAACT : 1680380 39 : heSerTyrAlaIleTrpAlaIleValPheAlaIleLeuValValGlyValAspLeu : 56 :! !||| !:!: !.!:!! ! ! :!!||| !:!!! ! !:!!|||||| yrLeuTyrMetLeuLeuValLeuSerValSerIleThrIleGluLeuLeuAspLeu 1680381 : ATCTGTACATGTTGCTCGTTCTTTCTGTATCTATAACAATCGAATTGTTAGATCTT : 1680434 57 : TyrTyrCysIleGlyAspPheTyrAlaValThr : 67 ||||||||| !|||!!.|||!.! !||| TyrTyrCysArgHisAspLeuTyrValCysThr 1680435 : TATTATTGCCGGCATGATTTATATGTGTGTACA : 1680469 vulgar: CbirOr154 0 67 . KQ414915.1 1680268 1680469 + 152 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1680269 1680469 152 + . gene_id 5 ; sequence CbirOr154 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1680269 1680469 . + . KQ414915.1 exonerate:protein2genome:local exon 1680269 1680469 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1680269 1680469 152 + . alignment_id 5 ; Query CbirOr154 ; Align 1680269 1 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr154 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 8 -> 146 Target range: 1697530 -> 1698793 9 : SerValArgIleThrArgLeuPheMetLysMetValGlyLeuTrpTyrValGluTh : 27 :!!:!! !!!:||| !!!!!!.||||||!!:||||||||||||! !.!:!! AlaLeuLeuMetThrSerPheLeuMetLysIleValGlyLeuTrpLeuAlaLysAs 1697531 : GCTCTGTTAATGACGTCGTTTTTAATGAAGATCGTCGGTCTTTGGTTAGCGAAAGA : 1697585 28 : rProArgGluArgLeuLeuLeuArgAlaAlaPheSerTyrAlaIleTrpAlaIleV : 46 ! !!:!|||..!! ! !! !||| !.!!!!.! !|||.!!:!: ||||||: pSerLysGluGluArgLysArgArgTyrThrLeuIleTyrThrValValAlaIleL 1697586 : CAGCAAGGAGGAACGCAAGCGTCGGTACACTTTGATCTATACGGTGGTCGCGATTT : 1697642 47 : alPheAla{Il} >>>> Target Intron 1 >>>> {e}LeuValValGly : 53 !!|||!.!{:!} 849 bp {!}||| ! ! ! euPheGly{Va}++ --{l}LeuLysProPhe 1697643 : TGTTTGGA{GT}gt.........................ta{A}CTTAAACCCTTC : 1698512 54 : ValAspLeuTyrTyrCysIleGlyAspPheTyrAlaValThrSerAsnLeuCysTh : 72 :!! !!:!! ||| ...... ! !.!!! !!.! !|||!. LeuHisIleGlyAsnThrIlePheGlnLeu***AspCysAlaTyrThrAlaCysAs 1698513 : TTACACATAGgcaatacaatttttcaattataggACTGTGCTTACACCGCTTGTAA : 1698569 73 : rThrLeuLeuLeuIleMetIleLeuValLysLeuGlySerPheMetPheTyrArgA : 91 !! !|||! !|||||||||:!!|||:!!|||||| ! ! ! .!..!.:!!||| nIleLeuCysLeuIleMetValLeuLeuLysLeuPheValValPheIleHisArgL 1698570 : CATTCTCTGCCTGATTATGGTACTGTTAAAGCTGTTCGTTGTATTCATACACAGGA : 1698626 92 : spIleValPheAspLeuIleArgPheAlaGluLysAsnPheTrpSerThrThrTyr : 109 ! ! !!.!!!!:|||::: ::: |||||||||||| ! !!.!||| ysGluPheIleGluLeuLeuValTyrMetTyrLysAsnPheTrpHisLeuAsnTyr 1698627 : AAGAATTCATCGAACTgcttgtatatatgtacaaaaatttttggcACCTCAATTAC : 1698680 110 : AspGluPheGlyAlaGlnValLeuGluThrTyrAspLysLeuGlyMetThrMetVa : 128 ||| !! ! !! !:!!|||:!! !! ! !:!:!!.!!! ! ! :! AspCysAsnGluLeuLeuLeuLeuGlnAspCysArgArgIleSerThrIleCysIl 1698681 : GATTGCAACGAACTACTACTGCTGCAAGACTGCAGAAGAATTAGCACTATATGTAT : 1698737 129 : lTyrIlePheThrPheIleValTyrIleAlaThrPheAsnTyrIlePheAlaPro : 146 ! :!:.!!!.!||| !!.! ! !.!!! ! !!!:!|||:!:.!..!!||| eThrLeuIleAsnPheCysAlaGlnGlyThrIleValSerTyrValLeuThrPro 1698738 : CACGTTGATTAACTTCTGTGCTCAAGGCACAATTGTCAGCTACGTGCTAACACCT : 1698793 vulgar: CbirOr154 8 146 . KQ414915.1 1697530 1698793 + 108 M 40 120 S 0 2 5 0 2 I 0 845 3 0 2 S 1 1 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1697531 1698793 108 + . gene_id 6 ; sequence CbirOr154 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1697531 1697652 . + . KQ414915.1 exonerate:protein2genome:local exon 1697531 1697652 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1697653 1697654 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1697653 1698501 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1698500 1698501 . + . intron_id 0 ; splice_site "TA" KQ414915.1 exonerate:protein2genome:local cds 1698502 1698793 . + . KQ414915.1 exonerate:protein2genome:local exon 1698502 1698793 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1697531 1698793 108 + . alignment_id 6 ; Query CbirOr154 ; Align 1697531 9 120 ; Align 1698503 50 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr155PSE Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 23 -> 144 Target range: 1707070 -> 1707706 24 : SerProTyrTyrGluIleAlaTyrThrLeuPro >>>> Target Intron 1 : 35 !!!||||||||||||||| !!:!|||! !! ! 276 bp ThrProTyrTyrGluIleLeuPheThrSerGln++ 1707071 : ACACCATACTATGAGATATTATTTACGTCGCAGgt..................... : 1707106 36 : >>>> IleMetAlaGlnLeuGluAsnValIleCysIlePheCysPheAspAsnPh : 51 :!!.!. ! !:!! ! ! !||| !! !.!!|||.!!|||||||| ++ValPheIleValMetTyrValCysIleSerTyrLeuCysIleAspAsnPh 1707107 : ....agGTTTTTATCGTAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTT : 1707428 52 : eValArgUnkValHisValAlaAlaGlnLeuLysIleLeuAsnArgLysValAspI : 70 |:!! !! :!!:!!:!! !.!! !:!!.!!! !! !:!! ! : eLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgL 1707429 : TCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGAC : 1707485 71 : leIleThrGluLysCysIleGluAspSerAlaAsnGluLysCysGlnProGluIle : 88 !: !.!! ! !! !.!.!!: !!::::::::: ::: euSerAsnValCysGlyAlaAsnGluArgSerAspLysIleSerLysLysThrPro 1707486 : TGTCGAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaaacaCCG : 1707539 89 : AspSerIleGluTrpValLeuLysLysLeuGlnAsnCysValGlnGlnHisLeuTh : 107 ..!!:! !!: !! ! |||!!!:!!||||||:!!|||||||||! !.! SerAsnSerAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAl 1707540 : TCCAATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGC : 1707596 108 : rLeuIleIleThrTyrValArgAsnMetGlnArgValPheAlaIleIleLeuLeuG : 126 !||| ||| !||| !!.!.!.:!:|||..!||||||!.!:!!.!!:!!|||! aLeu---IleGluTyrCysAsnGluLeuGlnGluValPheGlyLeuPheValLeuA 1707597 : ACTC---ATAGAATACTGTAACGAACTTCAAGAGGTGTTCGGTTTATTTGTGCTTG : 1707650 127 : lyGlnUnkProLeuSerSerValIleIleCysPheSerGlyPheSerLeuLeuVal : 144 .!||| !|||! !|||:!!:!!!!:|||.!!..!|||!:!! !:!!:!!||| laGlnValLeuLeuPheSerLeuLeuMetCysLeuAspGlyTyrLeuValMetVal 1707651 : CACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGGATATTTGGTGATGGTT : 1707704 vulgar: CbirOr155PSE 23 144 . KQ414915.1 1707070 1707706 + 117 M 11 33 5 0 2 I 0 272 3 0 2 M 74 222 G 1 0 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1707071 1707706 117 + . gene_id 1 ; sequence CbirOr155PSE ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1707071 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1707071 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707706 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707706 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1707071 1707706 117 + . alignment_id 1 ; Query CbirOr155PSE ; Align 1707071 24 33 ; Align 1707380 35 222 ; Align 1707602 110 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr155PSE Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 42 -> 144 Target range: 1699659 -> 1699971 43 : IleCysIlePheCysPheAspAsnPhe<-><->ValArgUnkValHisValAlaAl : 59 :!!||| !.!!||||||||||||.!! :!!! ! :!!|||!.!|||.! ValCysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaTh 1699660 : GTATGTTACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTAC : 1699714 60 : aGlnLeuLysIleLeuAsnArgLysValAspIleIleThrGluLysCysIleGluA : 78 !|||!!!:::||||||.!. !!:!:!!...! !:!: !!!:! ! !! :!!. rGlnPheArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysG 1699715 : TCAATTTCGTATACTGCAATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGC : 1699771 79 : sp<->SerAlaAsnGluLysCysGlnProGluIleAspSerIleGluTrpValLeu : 95 !. ..!! !||||||... !! ! !! ! ! !! ! ||| !! ! lnValAspAspAsnGluSerSerAlaAlaLeuSerArgPheAlaGluAsnCysTyr 1699772 : AAGTAGATGACAATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTAT : 1699825 96 : LysLysLeuGlnAsnCysValGlnGlnHisLeuThrLeuIleIleThrTyrValAr : 114 ||| !!!!:!!|||||||||!:!||||||! !!.! !||||||||| !!. LysAlaPheLysAsnCysValArgGlnHisGlnAsn---HisIleThrTyrCysHi 1699826 : AAGGCGTTTAAAAATTGCGTACGACAACATCAGAAT---CATATCACGTACTGTCA : 1699879 115 : gAsnMetGlnArgValPheAlaIleIleLeuLeuGlyGlnUnkProLeuSerSerV : 133 !!..:!!.!...!:!!|||.!!:!!|||:!!||||||!!. ! !:!!! !|||: sArgLeuAsnGluIlePheThrValIleValLeuGlyHisIleLeuValPheSerL 1699880 : CAGATTGAACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGCC : 1699936 134 : alIleIleCysPheSerGlyPheSerLeuLeuVal : 144 !!:!:||||||.!. !||||||..!:!!|||||| euLeuIleCysLeuValGlyPheGlnValLeuVal 1699937 : TTCTGATATGTCTGGTTGGATTCCAAGTGCTCGTA : 1699971 vulgar: CbirOr155PSE 42 144 . KQ414915.1 1699659 1699971 + 103 M 9 27 G 0 6 M 27 81 G 0 3 M 29 87 G 1 0 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699660 1699971 103 + . gene_id 2 ; sequence CbirOr155PSE ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1699660 1699971 . + . KQ414915.1 exonerate:protein2genome:local exon 1699660 1699971 . + . insertions 9 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1699660 1699971 103 + . alignment_id 2 ; Query CbirOr155PSE ; Align 1699660 43 27 ; Align 1699693 52 81 ; Align 1699777 79 87 ; Align 1699864 109 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr155PSE Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 42 -> 144 Target range: 1702040 -> 1702352 43 : IleCysIlePheCysPheAspAsnPhe<-><->ValArgUnkValHisValAlaAl : 59 :!!||| !.!!||||||||||||.!! :!!! ! :!!|||!.!|||.! ValCysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaTh 1702041 : GTATGTTACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTAC : 1702095 60 : aGlnLeuLysIleLeuAsnArgLysValAspIleIleThrGluLysCysIleGluA : 78 !|||!!!:::||||||.!. !!:!:!!...! !:!: !!!:! ! !! :!!. rGlnPheArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysG 1702096 : TCAATTTCGTATACTGCAATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGC : 1702152 79 : sp<->SerAlaAsnGluLysCysGlnProGluIleAspSerIleGluTrpValLeu : 95 !. ..!! !||||||... !! ! !! ! ! !! ! ||| !! ! lnValAspAspAsnGluSerSerAlaAlaLeuSerArgPheAlaGluAsnCysTyr 1702153 : AAGTAGATGACAATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTAT : 1702206 96 : LysLysLeuGlnAsnCysValGlnGlnHisLeuThrLeuIleIleThrTyrValAr : 114 ||| !!!!:!!|||||||||!:!||||||! !!.! !||||||||| !!. LysAlaPheLysAsnCysValArgGlnHisGlnAsn---HisIleThrTyrCysHi 1702207 : AAGGCGTTTAAAAATTGCGTACGACAACATCAGAAT---CATATCACGTACTGTCA : 1702260 115 : gAsnMetGlnArgValPheAlaIleIleLeuLeuGlyGlnUnkProLeuSerSerV : 133 !!..:!!.!...!:!!|||.!!:!!|||:!!||||||!!. ! !:!!! !|||: sArgLeuAsnGluIlePheThrValIleValLeuGlyHisIleLeuValPheSerL 1702261 : CAGATTGAACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGCC : 1702317 134 : alIleIleCysPheSerGlyPheSerLeuLeuVal : 144 !!:!:||||||.!. !||||||..!:!!|||||| euLeuIleCysLeuValGlyPheGlnValLeuVal 1702318 : TTCTGATATGTCTGGTTGGATTCCAAGTGCTCGTG : 1702352 vulgar: CbirOr155PSE 42 144 . KQ414915.1 1702040 1702352 + 103 M 9 27 G 0 6 M 27 81 G 0 3 M 29 87 G 1 0 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702041 1702352 103 + . gene_id 3 ; sequence CbirOr155PSE ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702041 1702352 . + . KQ414915.1 exonerate:protein2genome:local exon 1702041 1702352 . + . insertions 9 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1702041 1702352 103 + . alignment_id 3 ; Query CbirOr155PSE ; Align 1702041 43 27 ; Align 1702074 52 81 ; Align 1702158 79 87 ; Align 1702245 109 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr176 Target: KQ414583.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold34, whole genome shotgun sequence Model: protein2genome:local Raw score: 550 Query range: 106 -> 334 Target range: 619603 -> 620470 107 : LeuSerArgAspGluLeuHisGlnAspLeuLeuArgGluTyrThrTrpLysGlyLeuP : 126 :!! !!!.!:!!!!: !:!!:!! !:!!:!!! ! ! |||||||||:!!|||:!!| IleArgAsnAsnAspLysTyrGluArgIleValThrTyrTyrThrTrpGlnGlyIleP 619604 : ATCCGCAATAACGATAAATACGAACGTATCGTAACGTATTACACTTGGCAAGGAATTT : 619661 127 : heHisHisAlaValTyrGlnSerPheGlyAlaValAlaValPheCysTrpGlyPheTh : 145 |||||||| !..!||||||||||||||| !:!!||||||.!!! !|||..!! !|| heHisHisIleThrTyrGlnSerPheGlyIleIleAlaValIlePheTrpSerCysTh 619662 : TCCATCATATCACTTATCAAAGCTTCGGTATCATAGCTGTAATCTTCTGGTCATGCAC : 619718 146 : rProIleSerAspLeuIleAlaGlyArgSerArgGlnLeuProMetGluGlyTrpTyr : 164 | !!:!! !:!!|||!!: ! !!! !! !!:!! ||| !!!::!!!.!|||||| rAlaValValAsnLeuMetLysArgThrTyrGlnLeuLeuLeuIleLysAlaTrpTyr 619719 : AGCAGTTGTAAATCTGATGAAACGGACGTATCAACTTTTATTGATAAAAGCATGGTAT : 619775 165 : ProTyrAsnThrThrThrSerProAlaPheGluIleThrAlaAlaHisGlnGlyIleA : 184 |||||||||..!|||! !|||||||||!::|||...||| ||||||! !:!:! ProTyrAsnValThrIleSerProAlaTyrGluPheThrIleLeuHisGlnValValG 619776 : CCTTATAATGTAACAATTTCGCCAGCTTAtgaatttactattttacatCAAGTCGTGG : 619835 185 : laIleSerIleAlaCysPheHisAsnValAlaMetAspThrLeuIleThrGlyLeuIl : 203 .!:!!!!!::: |||...:::|||||||||!!:||||||!!!|||||||||!!!|| lyValThrValAsnCysIleAsnAsnValAlaIleAspThrPheIleThrGlyPheIl 619836 : GTGTCACTGtaaattgtattaataatGTAGCAATAGATACTTTTATAACAGGTTTTAT : 619892 204 : eThrValAlaCysCysGlnLeuAlaIleLeuGluArgAsnIleLeuSerIleAspAsn : 222 |! !..!|||||||||||||||.!!:!!|||... !||||||! !|||||| !! !! eIleThrAlaCysCysGlnLeuThrLeuLeuSerTyrAsnIleSerSerIleHisTyr 619893 : AATAACTGCTTGTTGCCAATTGACACTCTTAAGTTATAACATCTCTTCGATACACTAT : 619949 223 : GluLysIleValCysValValGlnAsnAspIleGlnAspAspGlnGlyAsnSerAspV : 242 ||| ! ! !!||| !.. ! !.!.||| !...!.!:!!!.!..!. GluAlaGluLysGluPheValAlaArg---ThrAspAspIleSerAlaAspLysSerT 619950 : GAAGCGGAGAAAGAATTTGTTGCTAGG---ACTGATGATATCAGTGCCGATAAATCTA : 620006 243 : alProGluGlyThrLeuSerProAsnGlnGlnLeuLysArgCysAlaMetHisAsnAs : 261 .! !!:!! ! ! !..! ! !!:::...|||||| ||| |||!:!!. hrSerLysThrTyrAsnGlnLeuTyrGluAspLeuLysIleCysIleGluHisSerAr 620007 : CTTCAAAAACTTACAACCAATTGTATgaggatttgaaaatttgcattgaaCATAGTAG : 620063 262 : nLeuIleTyr{As} >>>> Target Intron 1 >>>> {n}PheThrArgGlu : 269 .||||||! !{:!} 105 bp {!}|||.!!|||:!! gLeuIleSer{As}++ ++{p}PheAlaArgLys 620064 : ACTGATATCC{GA}gt.........................ag{T}TTCGCACGAAAG : 620192 270 : IleGlnAspIlePheGlyThrIleIlePhePheGlnPheLeuSerAsnCysLeuIleI : 289 |||||||||! !|||||||||:!:||||||||||||.!.||| !||||||:!!! !: IleGlnAspThrPheGlyThrValIlePhePheGlnLeuLeuValAsnCysIleThrV 620193 : ATTCAAGATACATTCGGTACTGTGATATTTTTTCAACTGCTGGTAAATTGTATAACCG : 620252 290 : leCysLeuIleAlaPheAsnValSerGln >>>> Target Intron 2 >>>> : 299 !!||||||:!!|||!:!|||:!!|||||| 81 bp alCysLeuLeuAlaTyrAsnIleSerGln++ ++ 620253 : TTTGTTTACTTGCATACAATATATCACAGgt.........................ag : 620361 300 : MetLysValTyrIleProGluValLeuIleGlyMetLeuThrTyrMetCysCysMetT : 318 :!!||| !|||:!!! !...! !|||.!!||||||!!!! !:!!||||||||||||| LeuLysTyrTyrValLeuSerAspLeuPheGlyMetPheMetHisMetCysCysMetT 620362 : CTGAAATATTACGTTCTATCCGATTTGTTTGGTATGTTTATGCATATGTGCTGTATGA : 620420 319 : hrTyrGlnIlePheIlePheCysTrpHisGlyAsnGluLeuHisLeuHis : 334 |||||||||||||||||!:!|||||||||||||||||||||:!!|||||| hrTyrGlnIlePheIleTyrCysTrpHisGlyAsnGluLeuTyrLeuHis 620421 : CATATCAAATCTTTATATATTGCTGGCACGGGAACGAACTGTATCTTCAT : 620470 vulgar: CbirOr176 106 334 . KQ414583.1 619603 620470 + 550 M 125 375 G 1 0 M 32 96 S 0 2 5 0 2 I 0 101 3 0 2 S 1 1 M 33 99 5 0 2 I 0 77 3 0 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414583.1 exonerate:protein2genome:local gene 619604 620470 550 + . gene_id 1 ; sequence CbirOr176 ; gene_orientation + KQ414583.1 exonerate:protein2genome:local cds 619604 620076 . + . KQ414583.1 exonerate:protein2genome:local exon 619604 620076 . + . insertions 0 ; deletions 1 KQ414583.1 exonerate:protein2genome:local splice5 620077 620078 . + . intron_id 1 ; splice_site "gt" KQ414583.1 exonerate:protein2genome:local intron 620077 620181 . + . intron_id 1 KQ414583.1 exonerate:protein2genome:local splice3 620180 620181 . + . intron_id 0 ; splice_site "AG" KQ414583.1 exonerate:protein2genome:local cds 620182 620281 . + . KQ414583.1 exonerate:protein2genome:local exon 620182 620281 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local splice5 620282 620283 . + . intron_id 2 ; splice_site "GT" KQ414583.1 exonerate:protein2genome:local intron 620282 620362 . + . intron_id 2 KQ414583.1 exonerate:protein2genome:local splice3 620361 620362 . + . intron_id 1 ; splice_site "AG" KQ414583.1 exonerate:protein2genome:local cds 620363 620470 . + . KQ414583.1 exonerate:protein2genome:local exon 620363 620470 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local similarity 619604 620470 550 + . alignment_id 1 ; Query CbirOr176 ; Align 619604 107 375 ; Align 619979 233 96 ; Align 620183 266 99 ; Align 620363 299 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr175CTE Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 506 Query range: 0 -> 232 Target range: 1063143 -> 1062361 1 : MetValLeuIleArgIleArgIleHisTyrValLeuArgValLeuGlnIleCysGl : 19 ||| !|||.!!!.! !.!|||||| ||||||!.!:!!|||:!!:!:..!|| MetSerLeuPheAsnAlaAsnIleHisArgValLeuHisIleLeuGluLeuAlaGl 1063143 : ATGAGCCTGTTCAACGCGAACATTCATCGAGTACTTCATATACTAGAATTGGCTGG : 1063089 20 : yAlaPheThrSerThrTrpProProAspProThrAlaThrLysArgGluIlePheP : 38 | !||||||!!!||||||||| !||| !!!.!::!!:!|||||||||:!! !!| yArgPheThrCysThrTrpProLeuAspSerAsnSerSerLysArgGluValValP 1063088 : AAGGTTCACGTGTACCTGGCCGTTAGATTCTAACAGCAGTAAAAGAGAAGTTGTCT : 1063032 39 : heArgAspLeuSerTrpPheLeuSerIleMetAsnValLeuSerSerIleProPro : 56 |||||:!!:!! !!||| !!!!!!!|||:!:||||||:!!! ! !:!: ! !! heArgAsnValArgTrpGlyPheThrIleLeuAsnValIleLeuLeuLeuIleSer 1063031 : TTCGTAACGTTCGATGGGGTTTCACGATACTAAACGTGATATTACTACTGATATCC : 1062978 57 : LeuIleLeuGlyAlaTrpTyrSerArgAsnAspIleIleGlnMetMetLysSerLe : 75 |||||||||... :::::: |||||||||||| :::||||||::::! LeuIleLeuAlaIlePheHisPheArgAsnAspIleThrIleLeuMetLysThrIl 1062977 : TTGATACTcgcgatttttcactttcgaaaCGACATaactattttaatgaaaaccaT : 1062921 76 : uSerGluLeuThrAlaLeuMetGluValLeuPheAsnLeuIleLeuCysLysIleG : 94 !||||||:!!|||||||||:!!|||||||||.!.:!!:!!||||||||||||!!:: eSerGluMetThrAlaLeuLeuGluValLeuMetAspMetIleLeuCysLysMetL 1062920 : CTCCGAGATGACTGCTCTGCTGGAGGTGTTGATGGACATGATTCTCTGCAAAATGA : 1062864 95 : luArgLeuArgLeuGln >>>> Target Intron 1 >>>> ValSerLysI : 103 !!!!! !!:!|||||| 86 bp |||.!!|||: ysSerAlaGlnLeuGln++ -+ValGlyLysV 1062863 : AGAGTGCACAGCTTCAggt.........................tgGTAGGAAAAG : 1062751 104 : leSerAspPhePheLysTyrSerGluLeuHisGluLysHisThrIleGlnLysTyr : 121 !!!.!! ||| ! ||| :!!.!. !:!!|||! ! ! !|||||| !||| alLysAlaPheValLysValAlaAsnLysAsnGluIleLysIleIleGlnGlyTyr 1062750 : TAAAGGCGTTTGTAAAAGTGGCAAACAAGAACGAGATTAAGATAATACAAGGATAC : 1062697 122 : IleAspArgTyrSerAsnPheSerAlaValValGlyIleSerTyrIleLeuAlaAl : 140 :!:|||||||||!.!...|||! !!.!..!:!!!.!!!:.!!|||:!!:!!.!!!. ValAspArgTyrLysArgPhePheGlyThrIleAlaMetGlyTyrValMetThrGl 1062696 : GTGGATCGATATAAACGATTTTTCGGAACAATAGCAATGGGATACGTAATGACTGG : 1062640 141 : aIleThrPheSerCysGlyProPhePheLeuProIleAsnLeuProMetGluAlaT : 159 !||||||||||||! !.!|||.!.|||! ! ! !.!.|||||| !!:!.!| yIleThrPheSerLeuAlaProLeuPheSerValGlnGluLeuProAlaAspGlyT 1062639 : AATCACGTTCAGTTTGGCGCCTCTGTTTTCCGTACAAGAATTGCCAGCAGACGGAT : 1062583 160 : rpTyrProPheProThrAspSerLeuTyrValArgSerIleLeuTyrIleSerGln : 177 || !|||||| !!! ! ! !!||| ||| !!!!:!!:!!|||.!! !||| rpIleProPheSerIleLysProLeuGlyValTyrCysLeuValTyrPheValGln 1062582 : GGATCCCGTTTTCCATTAAACCACTGGGAGTATATTGCCTCGTATACTTTGTGCAG : 1062529 178 : ValLeuAlaIleLeuGlnThrGlyPheCysIleThrValAspPheMetIleAlaMe : 196 |||! !..!||||||||||||!.!|||||||||!:!||||||||||||||||||:! ValTyrCysIleLeuGlnThrAlaPheCysIleSerValAspPheMetIleAlaLe 1062528 : GTTTACTGCATTCTCCAAACAGCGTTCTGCATTAGCGTGGATTTCATGATCGCTCT : 1062472 197 : tPhePheTrpTyrSerAlaAlaArgLeuAspMetLeuGlyLeuGluLeuGlnHisI : 215 :.!..!! ! !:!|||||||||!:!||||||!!:||||||:!!:!!|||!:! ! uLeuIleSerPheSerAlaAlaLysLeuAspIleLeuGlyMetLysLeuArgLysA 1062471 : TCTAATCAGCTTCTCCGCGGCTAAATTAGACATACTGGGGATGAAACTGCGAAAAG : 1062415 216 : leThrHisGluAsnGlnIleLysThrCysIleGlnLysHisGlnGluIleIle : 232 !.! !.!.:!! !:!: !!:!|||:!!:!!:!!||||||||||||||| laAsnGlyHisAspValLeuValSerCysValLysGluHisGlnGluIleIle 1062414 : CGAATGGCCACGACGTGCTGGTAAGCTGTGTCAAAGAACACCAAGAGATAATA : 1062362 vulgar: CbirOr175CTE 0 232 . KQ414618.1 1063143 1062361 - 506 M 99 297 5 0 2 I 0 82 3 0 2 M 133 399 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1062362 1063143 506 - . gene_id 1 ; sequence CbirOr175CTE ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1062847 1063143 . - . KQ414618.1 exonerate:protein2genome:local exon 1062847 1063143 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1062845 1062846 . - . intron_id 1 ; splice_site "gt" KQ414618.1 exonerate:protein2genome:local intron 1062761 1062846 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1062761 1062762 . - . intron_id 0 ; splice_site "TG" KQ414618.1 exonerate:protein2genome:local cds 1062362 1062760 . - . KQ414618.1 exonerate:protein2genome:local exon 1062362 1062760 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1062362 1063143 506 - . alignment_id 1 ; Query CbirOr175CTE ; Align 1063144 1 297 ; Align 1062761 100 399 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr175CTE Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 215 Query range: 74 -> 233 Target range: 1058209 -> 1057732 75 : LeuSerGluLeuThrAlaLeuMetGluValLeuPheAsnLeuIleLeuCysLysIl : 93 :!!||| ! !||| !|||:::...:::|||......||| !! ! |||! IleSerIleGluThrPheLeuLeuAsnIleLeuIleGluLeuSerProValLysAs 1058209 : ATTTCGATAGAAACATTTCtgttaaacattttaattgaacTGTCACCGGTGAAAAA : 1058155 94 : eGluArgLeuArgLeuGlnValSerLysIleSerAspPhePheLysTyrSerGluL : 112 !.!. !! !!:!:!! ! !! ! ! !!:..!:!!|||! !!:!|||:!! nAsnAlaSerGlnValLeuTyrPheAspMetGluAsnPheCysArgTyrAlaThrS 1058154 : CAATGCTTCGCAGGTATTGTACTTCGACATGGAGAATTTCTGCAGATACGCCACCt : 1058098 113 : euHisGluLysHisThrIleGlnLysTyrIleAspArgTyrSerAsnPheSerAla : 130 |||||| ...:!:|||::!|||:!:|||||||||!.! !!||| !!.! erLysGluLysValValLeuGlnArgTyrValAspArgTyrLysTyrPheHisGly 1058097 : cgaaggaaaaagttgtcCTGCAACGATACGTGGACAGATACAAATACTTTCATGGG : 1058044 131 : ValValGlyIleSerTyrIleLeuAlaAlaIleThrPheSerCysGlyProPhePh : 149 :!! ! !:!!!!!! !.!!|||.!!.!!||| ! !!! ! !!||||||!!.!: IleTyrIleLeuTrpCysPheLeuThrThrIlePheValIleSerGlyProLeuTy 1058043 : ATTTATATATTATGGTGCTTCCTCACGACCATCTTCGTCATAAGTGGTCCATTGTA : 1057987 150 : eLeuProIleAsnLeuProMetGluAlaTrpTyrProPheProThrAspSerLeuT : 168 !! !||| !..!!!|||! .!.||| |||||||||! !..!!!: ! ! rSerProGlnThrPheProThrHisAlaIleTyrProPheGlnValGluHisThrL 1057986 : CTCACCACAGACGTTCCCCACTCATGCGATATATCCTTTCCAAGTGGAACATACAC : 1057930 169 : yrValArgSerIleLeuTyrIleSerGlnValLeuAlaIleLeuGlnThrGlyPhe : 186 !!!:: ::::::|||... ||| !|||!.! !!!!|||.!!..! ! euPheLysIleValIleTyrPheHisGlnSerLeuValGlyPheGlnAlaSerAla 1057929 : TGTTCAagattgttatttatttccatCAGTCGTTAGTTGGTTTTCAGGCGTCCGCT : 1057876 187 : CysIleThrValAspPheMetIleAlaMetPhePheTrpTyrSerAlaAlaArgLe : 205 !!!!:.!!:!!||| !...||||||:!:.!!.!. ! |||:!!|||||||||!! GlyMetAlaIleAspThrGlnIleAlaLeuLeuLeuArgTyrAlaAlaAlaArgPh 1057875 : GGTATGGCCATCGACACTCAAATTGCTCTTCTTCTGCGATACGCGGCTGCCAGGTT : 1057819 206 : uAspMetLeuGlyLeuGluLeuGlnHisIleThrHisGluAsnGlnIleLysThrC : 224 !!!::!:|||||| !|||:!!!:!:!! !!.! !.!. !:!!.!!!!..!!| eGluLeuLeuGlyAsnGluMetArgAsnAlaAsnThrHisCysGluPheAsnAlaC 1057818 : CGAGCTATTGGGAAACGAGATGCGAAATGCAAATACTCACTGTGAATTCAATGCCT : 1057762 225 : ysIleGlnLysHisGlnGluIleIleArg : 233 |||||:!!||||||...|||:!!:!!||| ysIleGluLysHisSerGluLeuLeuArg 1057761 : GCATAGAGAAGCACAGTGAACTTCTCAGg : 1057733 vulgar: CbirOr175CTE 74 233 . KQ414618.1 1058209 1057732 - 215 M 159 477 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057733 1058209 215 - . gene_id 2 ; sequence CbirOr175CTE ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1057733 1058209 . - . KQ414618.1 exonerate:protein2genome:local exon 1057733 1058209 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057733 1058209 215 - . alignment_id 2 ; Query CbirOr175CTE ; Align 1058210 75 477 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr175CTE Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 149 Query range: 112 -> 233 Target range: 1029128 -> 1028765 113 : HisGluLysHisThrIleGlnLysTyrIleAspArgTyrSerAsnPheSerAlaVa : 131 :!!|||!:! !!..!.!!|||::!|||:!!|||!:!|||||| |||! !!.!.. TyrGluArgAspValPheGlnArgTyrValAspLysTyrSerLeuPheTyrValTh 1029128 : TACGAAAGAGACGTCTTTCAACGATACGTCGATAAATACTCTTTATTTTACGTAAC : 1029074 132 : lValGlyIleSerTyrIleLeuAlaAlaIleThrPheSerCysGlyProPhePheL : 150 ! !..! !!!!:! !|||.!!|||:!!! !.!. ! ||| ! .!!: rCysSerSerTrpPheTyrLeuThrAlaValIleMetValLeuGlySerArgIleI 1029073 : ATGTTCGTCGTGGTTTTACTTAACAGCAGTTATTATGGTTCTGGGAAGTCGGATTA : 1029017 151 : euProIleAsnLeuProMetGluAlaTrpTyrProPheProThrAspSerLeuTyr : 168 !! !! ! !!!!|||! .!.||| ||||||||||||..!:!!! ! ! ! leSerAspProPheProThrAsnAlaValTyrProPheProValAsnPheGluPro 1029016 : TATCTGATCCTTTTCCAACCAACGCCGTATATCCATTCCCTGTTAACTTTGAACCC : 1028963 169 : ValArgSerIleLeuTyrIleSerGlnValLeuAlaIleLeuGlnThrGlyPheCy : 187 :!!|||||||||:!!!:!!!: !||| !!!!!.! !:!!||| !!.! LeuArgSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHi 1028962 : TTGAGAAGTATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACA : 1028906 188 : sIleThrValAspPheMetIleAlaMetPhePheTrpTyrSerAlaAlaArgLeuA : 206 !! !!:!:!!:!! ! :!:! !|||:!!!!.!!. !:!:!!|||||||||!!!! sThrSerMetAsnValLeuThrAlaLeuLeuLeuLeuPheAlaAlaAlaArgPheG 1028905 : CACTAGTATGAATGTGCTAACTGCATTGTTATTACTATTTGCTGCAGCTCGTTTCG : 1028849 207 : spMetLeuGlyLeuGluLeuGlnHisIleThrHisGluAsnGlnIleLysThrCys : 224 !:!!:||| !:!!||||||::!:!!:!!!:! !! .!. !:!:! ! !||| luIleLeuMetMetGluLeuArgAsnValSerAspIleGluThrLeuIleLysCys 1028848 : AGATACTGATGATGGAGCTGAGGAATGTCAGTGACATTGAAACACTGATTAAATGT : 1028795 225 : IleGlnLysHisGlnGluIleIleArg : 233 !!::!!|||:!!..! :!! ||| MetLysLysTyrSerIleValArgArg 1028794 : ATGAAAAAGTATTCGATCGTACGGAGG : 1028766 vulgar: CbirOr175CTE 112 233 . KQ414618.1 1029128 1028765 - 149 M 121 363 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028766 1029128 149 - . gene_id 3 ; sequence CbirOr175CTE ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028766 1029128 . - . KQ414618.1 exonerate:protein2genome:local exon 1028766 1029128 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028766 1029128 149 - . alignment_id 3 ; Query CbirOr175CTE ; Align 1029129 113 363 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr172 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 176 Query range: 297 -> 368 Target range: 1024047 -> 1023768 298 : AspLysAlaTyrAspValAlaTrpGlnIleTyrThrSerProCysMetTyrGlySe : 316 !!::!!|||:!!..!:!!||||||.!.|||||| !||| !!!! !!: !!!.!|| GluGlnAlaHisSerIleAlaTrpAspIleTyrAspSerSerTrpIleAsnAlaSe 1024047 : GAACAGGCACACAGTATTGCCTGGGATATTTACGACTCCTCGTGGATTAACGCGTC : 1023993 317 : rSerIleMetArgGlnAsnIleTyrMetLeuIleGlnArgCysLeuLysProValV : 335 |!!!! :!:|||...!..||| :!::!!||||||||||||! !!:!|||:!!. rThrLysValArgSerArgIleValLeuIleIleGlnArgCysGlnArgProIleT 1023992 : CACGAAGGTTCGCAGTAGGATCGTGCTAATTATTCAAAGGTGCCAGAGACCTATTA : 1023936 336 : alIleSerThrSerGlyPheIleProValValSerIleLysPheCysGlyLys > : 353 .!||| !.!!! !||||||.!! !!!.! !|||:!!||||||||||||:!! hrIleHisAlaIleGlyPhePheThrAlaTrpSerLeuLysPheCysGlyGln++ 1023935 : CGATTCACGCTATTGGATTTTTCACCGCCTGGTCTTTAAAATTCTGTGGACAGgt. : 1023880 354 : >>> Target Intron 1 >>>> LeuLeuTyrLeuThrPheSerPhePheMet : 362 66 bp :::|||||| |||:::|||||| ! ++ValLeuTyrThrIlePheThrPhePheSer 1023879 : ........................agGttctttatacaatttttacctTCTTCTCG : 1023789 363 : AlaLeuArgAlaIleLeu : 368 ||||||!:!|||:!:||| AlaLeuLysAlaValLeu 1023788 : GCACTGAAGGCAGTGCTA : 1023769 vulgar: CbirOr172 297 368 . KQ414618.1 1024047 1023768 - 176 M 55 165 5 0 2 I 0 62 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1023769 1024047 176 - . gene_id 1 ; sequence CbirOr172 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1023883 1024047 . - . KQ414618.1 exonerate:protein2genome:local exon 1023883 1024047 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1023881 1023882 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1023817 1023882 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1023817 1023818 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1023769 1023816 . - . KQ414618.1 exonerate:protein2genome:local exon 1023769 1023816 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1023769 1024047 176 - . alignment_id 1 ; Query CbirOr172 ; Align 1024048 298 165 ; Align 1023817 353 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr171 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 281 Query range: 117 -> 231 Target range: 1052902 -> 1052560 118 : GluAlaCysIleGlnArgGluTyrValAspLysCysAlaHisPheTyrGlyPheCy : 136 ||| ! |||! !.!.!.|||:!!.!.|||||| !! !||||||||| !! GluArgGluIleLeuHisAsnTyrIleGlnLysCysLysLeuPheTyrGlyGlySe 1052902 : GAAAGGGAAATTCTCCACAACTATATCCAAAAATGCAAACTTTTTTACGGTGGTTC : 1052848 137 : sIleValValPheTyrMetSerLeuPheAlaLeuIleLeuGlyProValValLeuA : 155 :!!:!! ! |||:!:!!! ! !..!!!!:!!|||||||||||||||||| rLeuIleTrpThrTyrLeuCysAlaThrCysPheValLeuGlyProValValLeuP 1052847 : GTTAATTTGGACATACCTCTGTGCAACTTGTTTCGTATTAGGACCCGTTGTTCTAC : 1052791 156 : spGlnProPheProValThrAlaGluPheProPheAspAlaSerArgGlnProLeu : 173 .!.||||||||| !!:!||||||!:!|||||| !!.!!:!||| !|||:!! roAsnProPheProSerSerAlaGluTyrProPheArgValAsnArgThrProMet 1052790 : CAAATCCTTTTCCCAGCAGTGCAGAGTATCCGTTTCGCGTTAATCGTACACCCATG : 1052737 174 : ArgIleIleThrTyrLeuHisGlnValValValGlyLeuGlnIleAlaAlaHisLe : 192 !.! !|||..!|||||||||||| ! !!:!!.!!!!!||| !::!||||||:! AsnAlaIleValTyrLeuHisGlnSerPheIleSerPheGlnTyrSerAlaHisIl 1052736 : AATGCTATTGTCTACCTGCACCAATCTTTCATAAGCTTTCAGTACAGTGCACACAT : 1052680 193 : uCysValAsnAlaTyrMetAlaLeuLeuLeuTrpValThrSerAlaArgPheArgL : 211 !||||||!:! !!:! |||||||||||||||:!!|||:!!|||||||||!.!! eCysValSerIlePheGlyAlaLeuLeuLeuTrpIleThrAlaAlaArgPheHisC 1052679 : ATGTGTAAGCATTTTCGGAGCTCTTTTACTCTGGATTACGGCTGCGAGATTTCATT : 1052623 212 : euLeuThrGluGluIleArgAlaAlaThrAsnIleTyrAspPheIleLysCysIle : 229 !|||||| !|||:!!!:! !::!:!!!:!|||:!! !!.|||! |||:!! ysLeuThrLeuGluValGlnGlnSerSerSerIleHisMetLeuIleIleCysVal 1052622 : GCTTAACTCTGGAGGTTCAACAAAGTTCAAGTATTCATATGTTAATCATCTGTGTT : 1052569 230 : LysLys : 231 |||||| LysLys 1052568 : AAGAAA : 1052561 vulgar: CbirOr171 117 231 . KQ414618.1 1052902 1052560 - 281 M 114 342 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1052561 1052902 281 - . gene_id 1 ; sequence CbirOr171 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1052561 1052902 . - . KQ414618.1 exonerate:protein2genome:local exon 1052561 1052902 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1052561 1052902 281 - . alignment_id 1 ; Query CbirOr171 ; Align 1052903 118 342 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr171 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 252 Query range: 98 -> 232 Target range: 1029179 -> 1028780 99 : LeuGlnPheValThrPheGluMetGluArgPheCysAlaLeuIleLysSerHisGl : 117 |||||| :!!! ! ||||||:!!! !! !|||! ! ! ||| !!:!!|| LeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGl 1029179 : TTGCAGAAACTAATCGAAGAAATGAAGATTTGCTGTGAAACAGCGAAACCATACGA : 1029125 118 : uGluAlaCysIleGlnArgGluTyrValAspLysCysAlaHisPheTyrGlyPheC : 136 |..!! ! !.!!|||||| ||||||||||||! !:!! ||||||! ! | uArgAspValPheGlnArg---TyrValAspLysTyrSerLeuPheTyrValThrC 1029124 : AAGAGACGTCTTTCAACGA---TACGTCGATAAATACTCTTTATTTTACGTAACAT : 1029071 137 : ysIleValValPheTyrMetSerLeuPheAlaLeuIleLeuGlyProValValLeu : 154 || ! !||||||:!:!!! ! !! !:!!:!!|||||| ! !:!!:!! ysSerSerTrpPheTyrLeuThrAlaValIleMetValLeuGlySerArgIleIle 1029070 : GTTCGTCGTGGTTTTACTTAACAGCAGTTATTATGGTTCTGGGAAGTCGGATTATA : 1029017 155 : AspGlnProPheProValThrAlaGluPheProPheAspAlaSerArgGlnProLe : 173 ..!.!.|||||||||..!!.!|||! !!:!|||||| !!.!!:! !:!!||||| SerAspProPheProThrAsnAlaValTyrProPheProValAsnPheGluProLe 1029016 : TCTGATCCTTTTCCAACCAACGCCGTATATCCATTCCCTGTTAACTTTGAACCCTT : 1028960 174 : uArgIleIleThrTyrLeuHisGlnValValValGlyLeuGlnIleAlaAlaHisL : 192 ||||! !|||! !!:!:!!|||||| ! !!||||||:!!||| !||||||||| uArgSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisT 1028959 : GAGAAGTATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACA : 1028903 193 : euCysValAsnAlaTyrMetAlaLeuLeuLeuTrpValThrSerAlaArgPheArg : 210 ! !!:!!|||!.! ! |||||||||||| !!.!!:!!|||||||||..! hrSerMetAsnValLeuThrAlaLeuLeuLeuLeuPheAlaAlaAlaArgPheGlu 1028902 : CTAGTATGAATGTGCTAACTGCATTGTTATTACTATTTGCTGCAGCTCGTTTCGAG : 1028849 211 : LeuLeuThrGluGluIleArgAlaAlaThrAsnIleTyrAspPheIleLysCysIl : 229 :!!|||! ! !|||:!:||| !!.!!:!:!!||| ! .!.|||||||||!! IleLeuMetMetGluLeuArgAsnValSerAspIleGluThrLeuIleLysCysMe 1028848 : ATACTGATGATGGAGCTGAGGAATGTCAGTGACATTGAAACACTGATTAAATGTAT : 1028792 230 : eLysLysHis : 232 :||||||:!! tLysLysTyr 1028791 : GAAAAAGTAT : 1028781 vulgar: CbirOr171 98 232 . KQ414618.1 1029179 1028780 - 252 M 25 75 G 1 0 M 108 324 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028781 1029179 252 - . gene_id 2 ; sequence CbirOr171 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028781 1029179 . - . KQ414618.1 exonerate:protein2genome:local exon 1028781 1029179 . - . insertions 0 ; deletions 1 KQ414618.1 exonerate:protein2genome:local similarity 1028781 1029179 252 - . alignment_id 2 ; Query CbirOr171 ; Align 1029180 99 75 ; Align 1029105 125 324 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr173PI Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 94 -> 220 Target range: 1029179 -> 1028801 95 : IleGlnLysLeuLeuPheGluIleGluGlnProHisLysThrTrpThrProArgGl : 113 :!:|||||||||:!! |||!!::!! ! !:!!||| !! !||| !|| LeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGl 1029179 : TTGCAGAAACTAATCGAAGAAATGAAGATTTGCTGTGAAACAGCGAAACCATACGA : 1029125 114 : uGlnIleIleLysValLysPheIleArgArgPheTyrLysPheCysIleLeuLeuT : 132 |::! !:!! !::!!:!:!! !!:!!:!! ! !|||! !:!! !! !! uArgAspValPheGlnArgTyrValAspLysTyrSerLeuPheTyrValThrCysS 1029124 : AAGAGACGTCTTTCAACGATACGTCGATAAATACTCTTTATTTTACGTAACATGTT : 1029068 133 : rpIleIleThrValIleAspLeuAlaIlePheValPheSerSerLeuIleSerAsn : 150 ! ! !:!! !!.!|||.!.|||.!..!!|||! !|||! !::! erSerTrpPheTyrLeuThrAlaValIleMetValLeuGlySerArgIleIleSer 1029067 : CGTCGTGGTTTTACTTAACAGCAGTTATTATGGTTCTGGGAAGTCGGATTATATCT : 1029014 151 : GluMetTyrProIleAsnValValTyrProPheProIleSerAsnAsnTrpValTy : 169 !!: !:!|||! !|||!.!|||||||||||||||:!!!:! !.!. :!! AspProPheProThrAsnAlaValTyrProPheProValAsnPheGluProLeuAr 1029013 : GATCCTTTTCCAACCAACGCCGTATATCCATTCCCTGTTAACTTTGAACCCTTGAG : 1028957 170 : rTyrValThrTyrValAspIleValIleAlaMetGlnGluThrCysValValMetL : 188 !:!!! !!:!:!! !! ! !.!!!.! !:!! !..!!.! !! gSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisThrS 1028956 : AAGTATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACACTA : 1028900 189 : euValAspLeuMetValThrLeuIleMetTrpHisAlaAlaPheGlnPheTyrLeu : 206 !:!!:!!:!!:!:..!.!!|||:!!:!: !|||||| !!::||| ! :!! erMetAsnValLeuThrAlaLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIle 1028899 : GTATGAATGTGCTAACTGCATTGTTATTACTATTTGCTGCAGCTCGTTTCGAGATA : 1028846 207 : LeuGlyMetGlnIleArgPheValAspThrAlaGluLysLeu : 220 ||| !|||:!!:!:||| !|||..! ! !|||! !||| LeuMetMetGluLeuArgAsnValSerAspIleGluThrLeu 1028845 : CTGATGATGGAGCTGAGGAATGTCAGTGACATTGAAACACTG : 1028802 vulgar: CbirOr173PI 94 220 . KQ414618.1 1029179 1028801 - 109 M 126 378 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028802 1029179 109 - . gene_id 1 ; sequence CbirOr173PI ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028802 1029179 . - . KQ414618.1 exonerate:protein2genome:local exon 1028802 1029179 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028802 1029179 109 - . alignment_id 1 ; Query CbirOr173PI ; Align 1029180 95 378 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr173PI Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 94 -> 229 Target range: 1038346 -> 1037941 95 : IleGlnLysLeuLeuPheGluIleGluGlnProHisLysThrTrpThrProArgGl : 113 :!:|||||||||:!! |||!!::!! ! !:!!||| ! !||| !|| LeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGl 1038346 : TTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGA : 1038292 114 : uGlnIleIleLysValLysPheIleArgArgPheTyrLysPheCysIleLeuLeuT : 132 |::! !:!! !::!!:!:!!!.!!:! ||| ||| !! uArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysS 1038291 : AAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTT : 1038235 133 : rpIleIleThrValIleAspLeuAlaIlePheValPheSerSerLeuIleSerAsn : 150 ! ! ! !:!! ! !|||.!.|||.!!.!!||||||:!!! !::! erSerTrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSer 1038234 : CGTCATGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCC : 1038181 151 : GluMetTyrProIleAsnValValTyrProPheProIleSerAsnAsnTrpValTy : 169 !!: !:!|||! !|||!.!|||||||||||||||:!!!:! !.!. :!! AspProPheProThrAsnAlaValTyrProPheProValAsnPheGluProLeuAr 1038180 : GATCCTTTTCCAACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAG : 1038124 170 : rTyrValThrTyrValAspIleValIleAlaMetGlnGluThrCysValValMetL : 188 !:!!! !!:!:!! !! ! !.!!!.! !:!! !..!!.! ! gSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisAlaS 1038123 : AAGCATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTA : 1038067 189 : euValAspLeuMetValThrLeuIleMetTrpHisAlaAlaPheGlnPheTyrLeu : 206 !:!!:!!:!!:!: !.!!|||:!!:!! !.!!.!! :::||| ::: erMetAsnValLeuSerAlaLeuLeuLeuLeuPheThrThrAlaArgPheGluIle 1038066 : GTATGAATGTGCTTTCTGCACTGTTATTGCTATTCACTACAGCtcgtttcgaaata : 1038013 207 : LeuGlyMetGlnIleArgPheValAspThrAlaGluLysLeuArgAlaSerIleTh : 225 ||| !! !:!!:!:||| !|||:!! ! !|||! !|||! ! !|||!!:! LeuMetThrGluLeuArgAsnValAsnAspIleGluThrLeuIleLysSerMetLy 1038012 : ttgaTGACGGAGTTGAGGAATGTCAATGATATCGAAACACTGATTAAGAGTATGAA : 1037956 226 : rGluUnkAsnThr : 229 !:!! :::||| sLysTyrSerThr 1037955 : AAAGTATTCGACT : 1037942 vulgar: CbirOr173PI 94 229 . KQ414618.1 1038346 1037941 - 102 M 135 405 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037942 1038346 102 - . gene_id 2 ; sequence CbirOr173PI ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1037942 1038346 . - . KQ414618.1 exonerate:protein2genome:local exon 1037942 1038346 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037942 1038346 102 - . alignment_id 2 ; Query CbirOr173PI ; Align 1038347 95 405 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr181 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 325 Query range: 150 -> 372 Target range: 3178000 -> 3178917 151 : LeuProTyrLysValTrpLeuProTyrAspSerSerThrSerProThrPheTrpIl : 169 |||||| ...! !|||:!!|||||||||! !|||:!!..! ! !!:! !|| LeuProIleSerAspTrpValProTyrAspLeuSerSerGlnLysLeuTyrThrIl 3178001 : TTGCCAATATCCGACTGGGTGCCTTACGATTTGTCCTCGCAAAAATTGTACACGAT : 3178055 170 : eThrSerIleGlnGlnIleIleThrValIlePheAlaThrIleIleAsnValGlyT : 188 |:!! !:!:!!.|||! ||| !:!!!!: !!..!.!!! !! !!:!|||!.!! eSerLeuLeuHisGlnThrIleGlyLeuMetValCysAlaAsnThrSerValAlaA 3178056 : ATCTCTGTTGCATCAAACGATAGGCCTGATGGTCTGTGCGAACACCAGCGTGGCAA : 3178112 189 : hrGluThrLeuValPheGlyPheIleLeuGlnThrCysAlaGlnIleGluIlePhe : 206 .!|||||||||:!! |||.!.!!::!!|||.!! !!||||||.!!||||||||| snGluThrLeuIleAlaGlyLeuMetIleGlnAlaGlyAlaGlnPheGluIlePhe 3178113 : ACGAAACACTTATCGCAGGGCTGATGATACAAGCTGGCGCGCAATTCGAGATATTT : 3178166 207 : GlnAsnArgLeuGluLysLeu<-><->ValIleTyrLysThrThrLysTyrAlaGl : 223 :!!||| !..!!!.||| :!!:!!! ! |||! !!:! !!::!|| CysHisArgAlaArgAsnLeuThrAlaLeuLeuLeuAspThrArgArgAsnSerGl 3178167 : TGCCATCGAGCGAGAAATCTAACCGCCCTACTCTTGGATACCAGAAGAAACAGCGA : 3178223 224 : uHisSerPheAlaSerSerAsnLysLysLysAlaThrIleSerGluTyrValCysH : 242 | !!!! |||! !!.!!.!!:! !!. :::......:::||| : uSerArgGluAlaPheLysThrArgCysAsnArgIleLeuGlyAsnPheValGluT 3178224 : GTCTAGAGAAGCTTTTAAGACCAGATGTAATCGaatacttggaaatttcgtggaAT : 3178280 243 : isHisLeuSerIleTyr{As} >>>> Target Intron 1 >>>> {n}Tyr : 249 !!||||||..!:!!|||{!!} 87 bp {.}!:! yrHisLeuGluValTyr{Ly}++ ++{s}Phe 3178281 : ATCATCTGGAAGTTTAC{aa}gt.........................ag{a}TTT : 3178388 250 : AlaLysThrLeuAsnSerIlePheAsnProIlePhePheValGlnPheCysGlySe : 268 .!!:!!|||:!!|||!!!:!:|||.!. !!!:.!!|||:!!||||||! ! !|| ThrGlnThrValAsnThrValPheGlnTyrMetIlePheLeuGlnPheSerIleSe 3178389 : ACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCTGCAATTTTCCATCAG : 3178445 269 : rIleIleValLeuCysThrSerValTyrTyrIleAlaGlyHisIleThrAspSerG : 287 | ! ||||||||| !|||:!!||| ! !!::!! ! !! ! !! !||| rSerThrValLeuCysLeuSerIleTyrLysMetSerThrIleAsnProPheSerM 3178446 : TTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGATTAATCCATTTAGCA : 3178502 288 : luSerAlaThrLeuLeuVal<->PheThrIleCysMetPheValGlnIleTyrVal : 304 !!:! !..!! !! !!.! !:! ! !||||||.!!..!|||:!:|||:!! etAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeuThrGlnValTyrLeu 3178503 : TGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACGCAGGTGTATTTA : 3178556 305 : TyrCysTrpSerGlyAsnGluValMetLeuLys >>>> Target Intron 2 : 316 |||||||||! !||||||||||||! !|||||| 155 bp TyrCysTrpPheGlyAsnGluValThrLeuLys++ 3178557 : TACTGTTGGTTCGGGAACGAGGTGACGTTGAAGgt..................... : 3178594 317 : >>>> SerValLysValAlaAspIleIleTyrHisLeuAspTrpProLeuLeuSe : 332 |||! !||||||!.!!!: !||||||.!.:!!|||||| !! !||| ! ++SerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuPr 3178595 : ....agAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCC : 3178795 333 : rValSerGluLysLysAspLeuLeuIleIleMetIleArgSerArgIleProIleG : 351 !..!..! !!:!||||||||||||:!:|||||| ||||||!:! !|||:!!: oThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValL 3178796 : CACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTA : 3178852 352 : lnPheThrSerSerPheLeuIleThrLeuSerHisGlnSerTyrSerAsnLeuLeu : 369 !!.!.||||||.!! !:!!:!!..!|||||| :!!|||!:!! !::!:!! ! ysMetThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerValSer 3178853 : AAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTTAGT : 3178906 370 : LysThrSer : 372 !:!! !||| ArgIleSer 3178907 : AGAATTTCC : 3178917 vulgar: CbirOr181 150 372 . KQ414646.1 3178000 3178917 + 325 M 63 189 G 0 6 M 34 102 S 0 2 5 0 2 I 0 83 3 0 2 S 1 1 M 45 135 G 0 3 M 22 66 5 0 2 I 0 151 3 0 2 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178001 3178917 325 + . gene_id 1 ; sequence CbirOr181 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3178001 3178299 . + . KQ414646.1 exonerate:protein2genome:local exon 3178001 3178299 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178300 3178301 . + . intron_id 1 ; splice_site "gt" KQ414646.1 exonerate:protein2genome:local intron 3178300 3178386 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3178385 3178386 . + . intron_id 0 ; splice_site "ag" KQ414646.1 exonerate:protein2genome:local cds 3178387 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178387 3178591 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178592 3178593 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3178592 3178746 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3178745 3178746 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3178747 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178747 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178001 3178917 325 + . alignment_id 1 ; Query CbirOr181 ; Align 3178001 151 189 ; Align 3178196 214 102 ; Align 3178388 249 135 ; Align 3178526 294 66 ; Align 3178747 316 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr181 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 271 Query range: 0 -> 213 Target range: 3159620 -> 3160338 1 : MetGlnLeuLeuSerLeuAsnPheLeuMetGlnThrIleAlaGlyIleTrpArgPr : 19 |||!!. !|||..!|||:::!!. !! !||||||..!||| ! ||||| MetHisThrLeuGlnLeuSerLeuLysThrLeuThrIleCysGlyTyrIleArgPr 3159621 : ATGCACACGTTGCAATTGTCGTTGAAAACTTTGACGATTTGCGGCTACATAAGGCC : 3159675 20 : oThrGluTrpArgSerSerGlyAlaLysLeuLeuTyrAsnValPheThrIlePheI : 38 ||||..!|||!:!||| !!||| !|||||||||||||||||| !|||:!! !: oThrSerTrpLysSerProGlyLeuLysLeuLeuTyrAsnValHisThrValThrV 3159676 : AACATCGTGGAAGTCACCGGGGCTAAAGCTTCTCTATAACGTACACACGGTTACTG : 3159732 39 : leLeuPheLeuIleTyrPheLeuMetLeuSerGlnPheMetAspSerValLeuVal : 56 !!:!! ! :!!:!! ! !!!.!.:!!:!!|||.!.:!:||| :::... alValValValLeuSerThrPhePheValAlaGlnIleLeuAspIleIlePheAsn 3159733 : TAGTGGTAGTTCTTAGCACGTTTTTCGTCGCCCAGATATTggacattattttcaac : 3159786 57 : ValAspAsnIleAspAspPheAlaThrAsnSerLeuMetPheValSerMetIleAl : 75 |||!!:||| !|||!!:|||::! !|||! !! !!!: !!!!:!!!!: ValGluAsnGlnAspGluPheSerAspAsnPheCysIleThrCysCysValMetAs 3159787 : gtgGAGAATCAAGACGAGTTTAGCGACAATTTCTGCATAACGTGCTGCGTGATGAA : 3159843 76 : aValCysCysLysAlaThrValIleValValArgArgAsnAlaIleIleAsnLeuV : 94 ! ! ! ! ||| ! ! !:!::!!:!! !!|||.!. !||| !||||||: nSerLeuGlyLysLeuTyrSerLeuLeuIleGlyArgGluMetIleGlnAsnLeuI 3159844 : CAGCCTTGGAAAGTTGTACAGCTTGCTGATAGGACGAGAAATGATCCAAAATTTAA : 3159900 95 : alGluValLeuLeuLysGluProTyrLysProArgAspAlaAspGluValAlaIle : 112 !!!!: !|||! !!..!!:||| !!:!||| !|||! !! ||| !! !||| leAspSerLeuGlnSerAspProLeuArgProLeuAspGluValGluAsnGluIle 3159901 : TAGACTCGCTACAAAGTGACCCTCTTAGGCCGTTGGACGAAGTGGAGAATGAAATT : 3159954 113 : GlnThrLysPheAspGluPheIle{Ar} >>>> Target Intron 1 >>>> : 121 !:! !!:! !!!::!! |||{..} 73 bp ArgLeuArgHisGluLysThrIle{Gl}++ + 3159955 : CGATTGAGACACGAGAAGACAATC{GA}gt.........................a : 3160054 122 : {g}SerTrpSerArgLysTyrLeuIleLeuAlaThrSerSerValThrSerValT : 139 {!}!.! |||! ! ||| !:!!! !.!!..! !|||!.!|||.!!||| +{u}LysLeuSerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValT 3160055 : g{A}AAGCTCTCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTAT : 3160108 140 : hrIleGlySerLeuLeuAsnValMetHis<->GlyTyrLeuProTyrLysValTrp : 156 !!!: !||| !:!!!..!.!.!.... !! ! |||||| !::!|||||| rpMetLeuSerAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrp 3160109 : GGATGTTGTCGGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGG : 3160162 157 : LeuProTyrAsp<->SerSerThrSerProThrPheTrpIleThrSerIleGlnGl : 174 ||||||!:!||| !!!:!!|||! ! !! !||| ! :!!|||! ! ! ! || LeuProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGl 3160163 : TTACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCA : 3160219 175 : nIleIleThrValIlePheAlaThrIleIleAsnValGlyThrGluThrLeuValP : 193 |.!!:!!|||:!!|||||| !|||! ! ! !:!!||||||!!:!.!||| !! nPheValThrLeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheS 3160220 : GTTTGTAACTCTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCA : 3160276 194 : heGlyPheIleLeuGlnThrCysAlaGlnIleGluIlePheGlnAsnArgLeuGlu : 211 !|||.!.:!::!!!!.! !! !..!|||.!!||||||.!!|||:!!||||||:!! erGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLys 3160277 : GCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAG : 3160330 212 : LysLeu : 213 !..:!! SerIle 3160331 : AGCATT : 3160338 vulgar: CbirOr181 0 213 . KQ414646.1 3159620 3160338 + 271 M 120 360 S 0 2 5 0 2 I 0 69 3 0 2 S 1 1 M 27 81 G 0 3 M 12 36 G 0 3 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3159621 3160338 271 + . gene_id 2 ; sequence CbirOr181 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3159621 3159982 . + . KQ414646.1 exonerate:protein2genome:local exon 3159621 3159982 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3159983 3159984 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3159983 3160055 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3160054 3160055 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3160056 3160338 . + . KQ414646.1 exonerate:protein2genome:local exon 3160056 3160338 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3159621 3160338 271 + . alignment_id 2 ; Query CbirOr181 ; Align 3159621 1 360 ; Align 3160057 122 81 ; Align 3160141 149 36 ; Align 3160180 161 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr181 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 0 -> 120 Target range: 3149023 -> 3149383 1 : MetGlnLeuLeuSerLeuAsnPheLeuMetGlnThrIleAlaGlyIleTrpArgPr : 19 ||| :!!||| !!! ! !||| !!!:! !||||||..!||| !|||||||| MetAlaIleLeuArgProAlaPheAsnIleLeuThrIleCysGlyCysTrpArgPr 3149024 : ATGGCTATCTTACGGCCAGCTTTCAACATACTGACGATCTGCGGATGCTGGAGGCC : 3149078 20 : oThrGluTrpArgSerSerGlyAlaLysLeuLeuTyrAsnValPheThrIlePheI : 38 | !..!!! |||!!!!!! !!|||||| ! !|||! !|||!:!|||!!:|||: oCysSerCysArgThrThrArgAlaLysAlaAlaTyrIleValTyrThrMetPheV 3149079 : GTGCTCGTGCCGAACGACACGCGCCAAGGCCGCGTACATCGTTTACACGATGTTCG : 3149135 39 : leLeuPheLeuIleTyrPheLeuMetLeuSerGlnPheMetAspSerValLeuVal : 56 !::!!.!!|||:!::!! !!!! :!:|||||||||...::: ::!||| ! alValLeuLeuLeuHisSerPheCysIleSerGlnPhePheAsnValIleLeuAsn 3149136 : TGGTACTTTTATTGCACAGCTTCTGCATctcgcaatttttcaacgtgatACTGAAC : 3149189 57 : ValAspAsnIleAspAspPheAlaThrAsnSerLeuMetPheValSerMetIleAl : 75 :!! !.. |||!!:.!.::! !!:!! !! !||||||:!!:!! :!! LeuArgThrAlaAspGluLeuSerGluSerPheTyrMetPheIleAlaSerValLe 3149190 : TTGAGAACGGCGGACGAGCTGAGCGAGAGTTTCTACATGTTCATCGCGTCCGTTCT : 3149246 76 : aValCysCysLysAlaThrValIleValValArgArgAsnAlaIleIleAsnLeuV : 94 ! !||||||||| !..!..!:!::!!..!!.!!.!...::!||| ! !||| uSerCysCysLysIleValThrLeuLeuThrAsnHisGlySerIleGluIleLeuA 3149247 : GTCCTGCTGCAAGATCGTCACGCTGCTGACGAACCACGGAAGCATCGAGATCCTCC : 3149303 95 : alGluValLeuLeuLysGluProTyrLysProArgAspAlaAspGluValAlaIle : 112 !..! !||| !:!!||||||! !|||||| !..!|||!!:|||!.!!.!||| rgArgArgLeuGluGluGluProCysLysProValSerAlaGluGluAlaValIle 3149304 : GGAGGAGACTGGAGGAGGAGCCGTGTAAACCTGTGAGCGCCGAGGAGGCTGTCATA : 3149357 113 : GlnThrLysPheAspGluPheIle : 120 |||!:!|||||||||..! !||| GlnSerLysPheAspArgAsnIle 3149358 : CAGAGTAAATTCGACAGAAACATC : 3149383 vulgar: CbirOr181 0 120 . KQ414646.1 3149023 3149383 + 204 M 120 360 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3149024 3149383 204 + . gene_id 3 ; sequence CbirOr181 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3149024 3149383 . + . KQ414646.1 exonerate:protein2genome:local exon 3149024 3149383 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3149024 3149383 204 + . alignment_id 3 ; Query CbirOr181 ; Align 3149024 1 360 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr181 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 188 Query range: 3 -> 125 Target range: 3179622 -> 3179985 4 : LeuSerLeuAsnPheLeuMetGlnThrIleAlaGlyIleTrpArgProThrGluTr : 22 ::!|||::: ||| ... ::!|||!.!||| !|||||||||! !..!|| ValSerValLeuPheThrPheLeuSerIleGlyGlyCysTrpArgProIleSerTr 3179623 : gtATCGGtactttttacatttctcaGTATCGGTGGCTGTTGGAGACCGATCTCGTG : 3179677 23 : pArgSerSerGlyAlaLysLeuLeuTyrAsnValPheThrIlePheIleLeuPheL : 41 | !|||!!! ! !! ! !:!!|||||||||!:!|||:!!.!!:!!|||.!!: pSerSerThrTyrLysThrAlaIleTyrAsnValTyrThrValLeuValLeuIleM 3179678 : GTCTTCGACGTACAAAACGGCAATCTACAATGTCTACACCGTTCTCGTATTAATCA : 3179734 42 : euIleTyrPheLeuMetLeuSerGlnPheMetAspSerValLeuValValAspAsn : 59 !! ! ! !!!!|||:!!||||||||| ! !|||:!!!!!..!:!!!!:!.! etGlyValAsnPheMetValSerGlnPhe---GlySerMetPheThrIleGluThr 3179735 : TGGGTGTTAATTTCATGGTTTCGCAATTT---GGCAGCATGTTCACCATAGAAACC : 3179785 60 : IleAspAspPheAlaThrAsnSerLeuMetPheValSerMetIleAlaValCysCy : 78 :!!.!.||||||!.! ! !!!!! !!!:! !||||||:!!.!!!.!! !||||| ValGlnAspPheValAspLeuThrTyrIleCysValSerValPheValGlyCysCy 3179786 : GTACAAGATTTCGTCGACCTTACTTACATATGCGTCTCCGTGTTCGTCGGTTGTTG : 3179842 79 : sLysAlaThrValIleValValArgArgAsnAlaIleIleAsnLeuValGluValL : 97 |||| !:!! !:!:||| !! !|||!!.! !||||||:!!|||:!!.!.:!!! sLysLeuSerAsnValValPheTyrArgLysAspIleIleAspLeuMetAsnIleP 3179843 : CAAGCTGTCAAACGTGGTGTTCTATCGGAAAGATATCATAGACCTGATGAACATCT : 3179899 98 : euLeuLysGluProTyrLysProArgAspAlaAspGluValAlaIleGlnThrLys : 115 !!:!!:!!!!:|||! ! ! ! !:!! !!!:|||! ! !:!:|||.!!!:! heMetGluAspProCysAlaCysSerAsnLysGluGluAspGlnValGlnAlaArg 3179900 : TCATGGAGGATCCTTGTGCATGTTCGAACAAGGAGGAGGACCAGGTGCAAGCGAGA : 3179953 116 : PheAspGluPheIleArgSerTrpSerArg : 125 !:!|||!!: :!!|||||| !!||| TyrAspAspGlnLeuArgSerValArgArg 3179954 : TACGACGATCAATTACGGTCAGTACGAAGA : 3179985 vulgar: CbirOr181 3 125 . KQ414646.1 3179622 3179985 + 188 M 47 141 G 1 0 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3179623 3179985 188 + . gene_id 4 ; sequence CbirOr181 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3179623 3179985 . + . KQ414646.1 exonerate:protein2genome:local exon 3179623 3179985 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3179623 3179985 188 + . alignment_id 4 ; Query CbirOr181 ; Align 3179623 4 141 ; Align 3179764 52 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr181 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 120 -> 213 Target range: 3155400 -> 3155679 121 : ArgSerTrpSerArgLysTyrLeuIleLeuAlaThrSerSerValThrSerValTh : 139 |||!!! ! |||! ! ! ||| !||||||!.! !|||!!!|||! !!!!:!!:! ArgArgSerSerThrTyrTyrAlaIleLeuValGluSerThrValMetThrLeuSe 3155401 : AGAAGAAGCTCAACCTATTACGCGATTCTGGTCGAATCGACGGTGATGACTTTGTC : 3155455 140 : rIleGlySerLeuLeuAsnValMetHisGlyTyrLeuProTyrLysValTrpLeuP : 158 !.!!|||:!!||||||!!. ! !! !|||||||||::!:!!||||||| rPheGlyAlaLeuLeuLysProGluSerArgProLeuProTyrArgIleTrpLeuP 3155456 : TTTCGGTGCACTGTTGAAACCAGAATCACGTCCTTTACCGTATCGAATTTGGCTAC : 3155512 159 : roTyrAspSerSerThrSerProThrPheTrpIleThrSerIleGlnGlnIleIle : 176 ||! !:!!! !!!! !!! ! !|||!:!!! ! !! !! !! ||| !:!: roCysAsnTyrThrProLeuIleThrTyrCysSerIleTyrThrLeuGlnCysVal 3155513 : CTTGCAATTACACCCCGTTAATTACTTACTGTTCGATTTACACTCTCCAATGTGTG : 3155566 177 : ThrValIlePheAlaThrIleIleAsnValGlyThrGluThrLeuValPheGlyPh : 195 .!!:!! !.!.::!.!!!!:!!::!!|||!.! !!!:!:!|||:!!! !|||.! AlaLeuAlaLeuSerAlaMetMetHisValAlaCysAspSerLeuIleCysGlyLe 3155567 : GCACTCGCTCTAAGCGCTATGATGCACGTCGCCTGCGACAGTTTGATCTGCGGCCT : 3155623 196 : eIleLeuGlnThrCysAlaGlnIleGluIlePheGlnAsnArgLeuGluLysLeu : 213 .:!:|||!!.|||! !!.!||||||||||||.!! !||||||::: ::: uLeuLeuHisThrTyrGlyGlnIleGluIleLeuGlyCysArgLeuLysThrIle 3155624 : GCTGTTACACACTTACGGCCAGATCGAGATCCTCGGTTGTCGTCTGAaaacgata : 3155679 vulgar: CbirOr181 120 213 . KQ414646.1 3155400 3155679 + 127 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155401 3155679 127 + . gene_id 5 ; sequence CbirOr181 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155401 3155679 . + . KQ414646.1 exonerate:protein2genome:local exon 3155401 3155679 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155401 3155679 127 + . alignment_id 5 ; Query CbirOr181 ; Align 3155401 121 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr181 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 315 -> 382 Target range: 3165264 -> 3165539 316 : SerValLysValAlaAspIleIleTyrHisLeuAspTrpProLeuLeuSerValSe : 334 |||:!!:!!:!! !! !!!!:|||!:!||| !|||||| !!! !|||!:! !!: SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAs 3165265 : AGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAA : 3165319 335 : rGluLysLysAspLeuLeuIleIleMetIleArgSerArgIleProIleGlnPheT : 353 !! ! !:!! |||||||||!!:|||! !|||:!! !! ||||||:!!|||| nValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheT 3165320 : CGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCA : 3165376 354 : hrSerSerPheLeuIleThrLeuSerHisGlnSerTyrSerAsn >>>> Targe : 368 |||||! ! !:!!:!!:!!:!!!:!! !:!!|||!:!! ! hrSerIleHisValValSerValAsnLeuGluSerPheMetAla++ 3165377 : CCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt.......... : 3165423 369 : t Intron 1 >>>> LeuLeuLysThrSerTyrSerAlaPheAsnLeuLeuGln : 380 74 bp :!!:!!||||||||||||||||||||||||:!!:!!||| ++ValIleLysThrSerTyrSerAlaPheAsnMetIleGln 3165424 : ...............agGTAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAA : 3165531 381 : GlnSer : 382 |||||| GlnSer 3165532 : CAAAGC : 3165539 vulgar: CbirOr181 315 382 . KQ414646.1 3165264 3165539 + 121 M 52 156 5 0 2 I 0 70 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3165265 3165539 121 + . gene_id 6 ; sequence CbirOr181 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3165265 3165420 . + . KQ414646.1 exonerate:protein2genome:local exon 3165265 3165420 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165421 3165422 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165421 3165494 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3165493 3165494 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165495 3165539 . + . KQ414646.1 exonerate:protein2genome:local exon 3165495 3165539 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3165265 3165539 121 + . alignment_id 6 ; Query CbirOr181 ; Align 3165265 316 156 ; Align 3165495 368 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr181 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 315 -> 381 Target range: 3156085 -> 3156416 316 : SerValLysValAlaAspIleIleTyrHisLeuAspTrpProLeuLeuSerValSe : 334 |||:!!:!!:!!:!!:!!!!:|||!:!|||||||||||| !!! !!!!..! !:! SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 3156086 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 3156140 335 : rGluLysLysAspLeuLeuIleIleMetIleArgSerArgIleProIleGlnPheT : 353 ! !|||::!:!!:!!|||! !!!:|||!!:|||:!! ! ||||||:!!.!!! aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 3156141 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 3156197 354 : hrSerSerPheLeuIleThrLeuSerHisGlnSerTyrSerAsn >>>> Targe : 368 !||| ! !:!!:!!:!!:!!!:!! !.!.|||!:! ! ! leSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 3156198 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.......... : 3156244 369 : t Intron 1 >>>> LeuLeuLysThrSerTyrSerAlaPheAsnLeuLeuGln : 380 133 bp ||||||||||||||||||||||||!:!|||:!!|||||| ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGln 3156245 : ...............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAA : 3156411 381 : Gln : 381 !:: Arg 3156412 : CGC : 3156416 vulgar: CbirOr181 315 381 . KQ414646.1 3156085 3156416 + 116 M 52 156 5 0 2 I 0 129 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3156086 3156416 116 + . gene_id 7 ; sequence CbirOr181 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3156086 3156241 . + . KQ414646.1 exonerate:protein2genome:local exon 3156086 3156241 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156242 3156243 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156242 3156374 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3156373 3156374 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156375 3156416 . + . KQ414646.1 exonerate:protein2genome:local exon 3156375 3156416 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3156086 3156416 116 + . alignment_id 7 ; Query CbirOr181 ; Align 3156086 316 156 ; Align 3156375 368 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr181 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 152 -> 225 Target range: 3153210 -> 3153429 153 : TyrLysValTrpLeuProTyrAspSerSerThrSerProThrPheTrpIleThrSe : 171 ::::::||||||||||||||||||!!!!!!|||..!|||..!||| :!:! !! PheArgValTrpLeuProTyrAspThrThrThrGlnProValPheThrLeuIleTy 3153211 : tttcgcgtCTGGTTACCTTACGACACTACTACACAACCTGTCTTCACTCTGATCTA : 3153265 172 : rIleGlnGlnIleIleThrValIlePheAlaThrIleIleAsnValGlyThrGluT : 190 ! !|||||||||:!! !..! !:!::!..!! !||||||||| ! !!!: rCysGlnGlnIleValCysThrTrpTyrSerValAsnIleAsnValIleCysAspC 3153266 : CTGTCAACAGATCGTCTGCACGTGGTACAGCGTGAATATTAACGTCATTTGCGACT : 3153322 191 : hrLeuValPheGlyPheIleLeuGlnThrCysAlaGlnIleGluIlePheGlnAsn : 208 !||| !! !|||.!.!!::!!|||! !|||:!! :!!..!! .!.:!! ! ysLeuPheSerGlyLeuMetIleGlnIleCysSerIleLeuArgLysMetLysPro 3153323 : GCCTGTTCAGCGGCCTGATGATACAGATTTGCTCAATCTTACGGAAGATGAAACCT : 3153376 209 : ArgLeuGluLysLeuValIleTyrLysThrThrLysTyrAlaGluHisSer : 225 ! !! !..!!!.! !|||:!! !! ! !! !!:!|||.!!...!!.||| ThrArgArgAsnCysValLeuValThrIleIleArgTyrThrSerGlnSer 3153377 : ACTCGGCGAAACTGTGTGCTCGTCACCATAATCAGATATACAAGCCAGTCT : 3153429 vulgar: CbirOr181 152 225 . KQ414646.1 3153210 3153429 + 114 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153211 3153429 114 + . gene_id 8 ; sequence CbirOr181 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153211 3153429 . + . KQ414646.1 exonerate:protein2genome:local exon 3153211 3153429 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153211 3153429 114 + . alignment_id 8 ; Query CbirOr181 ; Align 3153211 153 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr181 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 150 -> 213 Target range: 3164409 -> 3164598 151 : LeuProTyrLysValTrpLeuProTyrAspSerSerThrSerProThrPheTrpIl : 169 ||| !!:!::!!.!|||||||||||||||! !||| !!:!!|||! !||| :! LeuMetPheArgAlaTrpLeuProTyrAspTyrSerProAlaProIlePheIleLe 3164410 : CTGATGTTTCGAGCATGGTTACCCTACGATTACTCCCCTGCGCCCATTTTTATCCT : 3164464 170 : eThrSerIleGlnGlnIleIleThrValIlePheAlaThrIleIleAsnValGlyT : 188 !|||! !:!!!!.||| !|||.!!!.!! .!...! !! ! !:!||| !. uThrPheValHisGlnAlaIleAlaAlaThrIleCysCysThrSerSerValThrV 3164465 : TACCTTCGTCCATCAAGCTATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTG : 3164521 189 : hrGluThrLeuValPheGlyPheIleLeuGlnThrCysAlaGlnIleGluIlePhe : 206 .!!!::!!||| ! !|||!!.:!::!!.!.! !! !..!|||.!!||||||.!. alAspSerLeuTyrThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeu 3164522 : TGGATTCTCTATACACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTA : 3164575 207 : GlnAsnArgLeuGluLysLeu : 213 :!!:!!||||||..!!!.:!! GluHisArgLeuArgAsnVal 3164576 : GAACATCGTCTAAGGAACGTT : 3164598 vulgar: CbirOr181 150 213 . KQ414646.1 3164409 3164598 + 105 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164410 3164598 105 + . gene_id 9 ; sequence CbirOr181 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164410 3164598 . + . KQ414646.1 exonerate:protein2genome:local exon 3164410 3164598 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164410 3164598 105 + . alignment_id 9 ; Query CbirOr181 ; Align 3164410 151 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr180 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 333 Query range: 150 -> 372 Target range: 3178000 -> 3178917 151 : LeuProTyrArgValTrpLeuProTyrAspSerAsnIleAlaThrMetPheTrpIl : 169 |||||| !! !|||:!!|||||||||! !::! !! !:!!!:! !|| LeuProIleSerAspTrpValProTyrAspLeuSerSerGlnLysLeuTyrThrIl 3178001 : TTGCCAATATCCGACTGGGTGCCTTACGATTTGTCCTCGCAAAAATTGTACACGAT : 3178055 170 : eThrSerMetGlnGlnIleIleSerLeuIlePheAlaThrValIleAsnValGlyT : 188 |:!! !:!!!!.|||! |||.!!|||!!: !!..!.!! !! !!:!|||!.!! eSerLeuLeuHisGlnThrIleGlyLeuMetValCysAlaAsnThrSerValAlaA 3178056 : ATCTCTGTTGCATCAAACGATAGGCCTGATGGTCTGTGCGAACACCAGCGTGGCAA : 3178112 189 : hrGluThrLeuIleSerGlyPheIleLeuGlnThrCysAlaGlnIleGluIlePhe : 206 .!||||||||||||:!!|||.!.!!::!!|||.!! !!||||||.!!||||||||| snGluThrLeuIleAlaGlyLeuMetIleGlnAlaGlyAlaGlnPheGluIlePhe 3178113 : ACGAAACACTTATCGCAGGGCTGATGATACAAGCTGGCGCGCAATTCGAGATATTT : 3178166 207 : GlnAsnArgLeuHisLysLeu<-><->MetIleAsnGlnThrThrAlaTyrMetLy : 223 :!!||| !...!!.||| :!::!! .!.|||! ! ! !!! :! CysHisArgAlaArgAsnLeuThrAlaLeuLeuLeuAspThrArgArgAsnSerGl 3178167 : TGCCATCGAGCGAGAAATCTAACCGCCCTACTCTTGGATACCAGAAGAAACAGCGA : 3178223 224 : sGlnSerLeuAlaSerSerCysLysGlyThrSerIlePheSerGluTyrIleArgH : 242 !...!!! !|||! !!.! !!:! !!!.! ! |||.........::::::..!: uSerArgGluAlaPheLysThrArgCysAsnArgIleLeuGlyAsnPheValGluT 3178224 : GTCTAGAGAAGCTTTTAAGACCAGATGTAATCGaatacttggaaatttcgtggaAT : 3178280 243 : isHisLeuLysIleTyr{Gl} >>>> Target Intron 1 >>>> {u}Tyr : 249 !!||||||:!!:!!|||{:!} 87 bp {!}!:! yrHisLeuGluValTyr{Ly}++ ++{s}Phe 3178281 : ATCATCTGGAAGTTTAC{aa}gt.........................ag{a}TTT : 3178388 250 : AlaLysThrValAsnIleIlePheAsnProIlePhePheValGlnPhePheSerSe : 268 .!!:!!|||||||||! !:!:|||.!. !!!:.!!|||:!!||||||! !! !|| ThrGlnThrValAsnThrValPheGlnTyrMetIlePheLeuGlnPheSerIleSe 3178389 : ACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCTGCAATTTTCCATCAG : 3178445 269 : rIleIleValLeuCysThrSerValTyrTyrLeuSerGlnHisIleThrGluSerG : 287 | ! ||||||||| !|||:!!||| ! :!!||| ! !! ! !! ||| rSerThrValLeuCysLeuSerIleTyrLysMetSerThrIleAsnProPheSerM 3178446 : TTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGATTAATCCATTTAGCA : 3178502 288 : lySerAlaThrPheIleVal<->TyrThrIleGlyMetPheValGlnIleTyrIle : 304 !!:! !..!!:: !!.! ||| ! ! !!|||.!!..!|||:!:|||:!! etAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeuThrGlnValTyrLeu 3178503 : TGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACGCAGGTGTATTTA : 3178556 305 : TyrCysTrpSerGlyAsnGluAlaIleLeuLys >>>> Target Intron 2 : 316 |||||||||! !|||||||||!.!! |||||| 155 bp TyrCysTrpPheGlyAsnGluValThrLeuLys++ 3178557 : TACTGTTGGTTCGGGAACGAGGTGACGTTGAAGgt..................... : 3178594 317 : >>>> SerThrSerValGlyAspValIleTyrGlnLeuAspTrpHisLeuLeuSe : 332 ||| !!.!||||||!!:!.!||||||:!!:!!|||||| !||| ! ++SerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuPr 3178595 : ....agAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCC : 3178795 333 : rValSerGluLysLysAspLeuLeuMetIleMetIleArgThrThrIleProIleL : 351 !..!..! !!:!||||||||||||:!!|||||| |||:!!! ! !|||:!!| oThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValL 3178796 : CACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTA : 3178852 352 : ysPheThrSerSerPheLeuIleThrLeuSerHisGluSerTyrSerAsnIleLeu : 369 ||.!.||||||.!! !:!!:!!..!|||||| ||||||!:!! !::!:!! ! ysMetThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerValSer 3178853 : AAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTTAGT : 3178906 370 : LysThrSer : 372 !:!! !||| ArgIleSer 3178907 : AGAATTTCC : 3178917 vulgar: CbirOr180 150 372 . KQ414646.1 3178000 3178917 + 333 M 63 189 G 0 6 M 34 102 S 0 2 5 0 2 I 0 83 3 0 2 S 1 1 M 45 135 G 0 3 M 22 66 5 0 2 I 0 151 3 0 2 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178001 3178917 333 + . gene_id 1 ; sequence CbirOr180 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3178001 3178299 . + . KQ414646.1 exonerate:protein2genome:local exon 3178001 3178299 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178300 3178301 . + . intron_id 1 ; splice_site "gt" KQ414646.1 exonerate:protein2genome:local intron 3178300 3178386 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3178385 3178386 . + . intron_id 0 ; splice_site "ag" KQ414646.1 exonerate:protein2genome:local cds 3178387 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178387 3178591 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178592 3178593 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3178592 3178746 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3178745 3178746 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3178747 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178747 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178001 3178917 333 + . alignment_id 1 ; Query CbirOr180 ; Align 3178001 151 189 ; Align 3178196 214 102 ; Align 3178388 249 135 ; Align 3178526 294 66 ; Align 3178747 316 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr180 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 272 Query range: 0 -> 213 Target range: 3159620 -> 3160338 1 : MetGlnIleLeuSerLeuAsnPheLeuMetTyrThrValGlyGlyIleTrpArgPr : 19 |||!!.! |||..!|||:::!!. !! ! |||:!! !!||| ! ||||| MetHisThrLeuGlnLeuSerLeuLysThrLeuThrIleCysGlyTyrIleArgPr 3159621 : ATGCACACGTTGCAATTGTCGTTGAAAACTTTGACGATTTGCGGCTACATAAGGCC : 3159675 20 : oIleLysTrpCysSerSerGlyLeuLysValLeuTyrAsnIlePheThrIleLeuV : 38 |! !..!||| ||| !!|||||||||:!!|||||||||:!! !|||:!! !| oThrSerTrpLysSerProGlyLeuLysLeuLeuTyrAsnValHisThrValThrV 3159676 : AACATCGTGGAAGTCACCGGGGCTAAAGCTTCTCTATAACGTACACACGGTTACTG : 3159732 39 : alLeuLeuSerLeuTyrPheLeuValLeuThrGlnPheLeuAspIleValLeuIle : 56 ||:!!:!! !||| ! !!! !!:!!.!!|||.!.|||||||||:::... alValValValLeuSerThrPhePheValAlaGlnIleLeuAspIleIlePheAsn 3159733 : TAGTGGTAGTTCTTAGCACGTTTTTCGTCGCCCAGATATTggacattattttcaac : 3159786 57 : ValAspAsnIleAspAspPheThrThrAsnSerLeuMetLeuLeuThrIleValAl : 75 |||!!:||| !|||!!:|||!:! !|||! !! !!!: !! ! !:!::!! ValGluAsnGlnAspGluPheSerAspAsnPheCysIleThrCysCysValMetAs 3159787 : gtgGAGAATCAAGACGAGTTTAGCGACAATTTCTGCATAACGTGCTGCGTGATGAA : 3159843 76 : aValCysCysLysAlaThrLeuValValValArgArgAsnAlaIleIleAsnLeuV : 94 ! ! ! ! ||| ! ! !:!!:!!:!! !!|||.!. !||| !||||||: nSerLeuGlyLysLeuTyrSerLeuLeuIleGlyArgGluMetIleGlnAsnLeuI 3159844 : CAGCCTTGGAAAGTTGTACAGCTTGCTGATAGGACGAGAAATGATCCAAAATTTAA : 3159900 95 : alArgMetLeuLeuLysAspProTyrLysLeuArgAspAlaAspGluMetAlaIle : 112 !! ! !|||! !!..|||||| !!:!! ! !|||! !! |||! ! !||| leAspSerLeuGlnSerAspProLeuArgProLeuAspGluValGluAsnGluIle 3159901 : TAGACTCGCTACAAAGTGACCCTCTTAGGCCGTTGGACGAAGTGGAGAATGAAATT : 3159954 113 : GlnArgLysPheAspThrPheIle{Ar} >>>> Target Intron 1 >>>> : 121 !:! !!:! !!!:! ! |||{..} 73 bp ArgLeuArgHisGluLysThrIle{Gl}++ + 3159955 : CGATTGAGACACGAGAAGACAATC{GA}gt.........................a : 3160054 122 : {g}SerTyrSerIleLysTyrSerLeuLeuCysThrThrSerLeuThrGlyValT : 139 {!}!.! !|||!!: |||!!!:!!! ! ..! !||| !||||||||| +{u}LysLeuSerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValT 3160055 : g{A}AAGCTCTCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTAT : 3160108 140 : hrIleGlySerValLeuAsnIleIleGln<->GlyTyrLeuProTyrArgValTrp : 156 !!!: !|||!.!:!!!.. !.!!::! !! ! |||||| !||||||||| rpMetLeuSerAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrp 3160109 : GGATGTTGTCGGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGG : 3160162 157 : LeuProTyrAspSerAsnIleAlaThr<->MetPheTrpIleThrSerMetGlnGl : 174 ||||||!:!|||! !!.. !.!! ! !!:||| ! :!!|||! ! ! || LeuProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGl 3160163 : TTACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCA : 3160219 175 : nIleIleSerLeuIlePheAlaThrValIleAsnValGlyThrGluThrLeuIleS : 193 |.!!:!!!!!||||||||| !|||..! ! !:!!||||||!!:!.!|||.!!| nPheValThrLeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheS 3160220 : GTTTGTAACTCTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCA : 3160276 194 : erGlyPheIleLeuGlnThrCysAlaGlnIleGluIlePheGlnAsnArgLeuHis : 211 |||||.!.:!::!!!!.! !! !..!|||.!!||||||.!!|||:!!|||||| ! erGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLys 3160277 : GCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAG : 3160330 212 : LysLeu : 213 !..:!! SerIle 3160331 : AGCATT : 3160338 vulgar: CbirOr180 0 213 . KQ414646.1 3159620 3160338 + 272 M 120 360 S 0 2 5 0 2 I 0 69 3 0 2 S 1 1 M 27 81 G 0 3 M 17 51 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3159621 3160338 272 + . gene_id 2 ; sequence CbirOr180 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3159621 3159982 . + . KQ414646.1 exonerate:protein2genome:local exon 3159621 3159982 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3159983 3159984 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3159983 3160055 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3160054 3160055 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3160056 3160338 . + . KQ414646.1 exonerate:protein2genome:local exon 3160056 3160338 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3159621 3160338 272 + . alignment_id 2 ; Query CbirOr180 ; Align 3159621 1 360 ; Align 3160057 122 81 ; Align 3160141 149 51 ; Align 3160195 166 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr180 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 190 Query range: 3 -> 131 Target range: 3179622 -> 3180003 4 : LeuSerLeuAsnPheLeuMetTyrThrValGlyGlyIleTrpArgProIleLysTr : 22 ::!|||::: ||| ... ::!:!!|||||| !||||||||||||..!|| ValSerValLeuPheThrPheLeuSerIleGlyGlyCysTrpArgProIleSerTr 3179623 : gtATCGGtactttttacatttctcaGTATCGGTGGCTGTTGGAGACCGATCTCGTG : 3179677 23 : pCysSerSerGlyLeuLysValLeuTyrAsnIlePheThrIleLeuValLeuLeuS : 41 |! !|||!!! ! !! !!.!:!!||||||:!!!:!|||:!!|||||||||:!!! pSerSerThrTyrLysThrAlaIleTyrAsnValTyrThrValLeuValLeuIleM 3179678 : GTCTTCGACGTACAAAACGGCAATCTACAATGTCTACACCGTTCTCGTATTAATCA : 3179734 42 : erLeuTyrPheLeuValLeuThrGlnPheLeuAspIleValLeuIleValAspAsn : 59 ! ! ! !!!!:!!:!!:!!|||||| ! !! !:!!!!!! !:!!!!:!.! etGlyValAsnPheMetValSerGlnPhe---GlySerMetPheThrIleGluThr 3179735 : TGGGTGTTAATTTCATGGTTTCGCAATTT---GGCAGCATGTTCACCATAGAAACC : 3179785 60 : IleAspAspPheThrThrAsnSerLeuMetLeuLeuThrIleValAlaValCysCy : 78 :!!.!.||||||..! ! !!!!! !!!:! !:!!:!!:!: !!!.!! !||||| ValGlnAspPheValAspLeuThrTyrIleCysValSerValPheValGlyCysCy 3179786 : GTACAAGATTTCGTCGACCTTACTTACATATGCGTCTCCGTGTTCGTCGGTTGTTG : 3179842 79 : sLysAlaThrLeuValValValArgArgAsnAlaIleIleAsnLeuValArgMetL : 97 |||| !:!! !|||||| !! !|||!!.! !||||||:!!|||:!!!.!!!:! sLysLeuSerAsnValValPheTyrArgLysAspIleIleAspLeuMetAsnIleP 3179843 : CAAGCTGTCAAACGTGGTGTTCTATCGGAAAGATATCATAGACCTGATGAACATCT : 3179899 98 : euLeuLysAspProTyrLysLeuArgAspAlaAspGluMetAlaIleGlnArgLys : 115 !!:!!:!!||||||! ! !! ! !:!! !!!:||| !:!:||| !!:! heMetGluAspProCysAlaCysSerAsnLysGluGluAspGlnValGlnAlaArg 3179900 : TCATGGAGGATCCTTGTGCATGTTCGAACAAGGAGGAGGACCAGGTGCAAGCGAGA : 3179953 116 : PheAspThrPheIleArgSerTyrSerIleLysTyrSerLeuLeuCys : 131 !:!||| ! :!!|||||| !!! ! ! ! !|||:!!! !||| TyrAspAspGlnLeuArgSerValArgArgAspSerSerIleCysCys 3179954 : TACGACGATCAATTACGGTCAGTACGAAGAGATTCTTCAATTTGTTGT : 3180003 vulgar: CbirOr180 3 131 . KQ414646.1 3179622 3180003 + 190 M 47 141 G 1 0 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3179623 3180003 190 + . gene_id 3 ; sequence CbirOr180 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3179623 3180003 . + . KQ414646.1 exonerate:protein2genome:local exon 3179623 3180003 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3179623 3180003 190 + . alignment_id 3 ; Query CbirOr180 ; Align 3179623 4 141 ; Align 3179764 52 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr180 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 120 -> 217 Target range: 3150032 -> 3150326 121 : ArgSerTyrSerIleLysTyrSerLeuLeuCysThrThrSerLeuThrGlyValTh : 139 |||||| !!!||| ! |||!!!:!!||| ! !!!!:!! ! !!:!!! ArgSerValThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCysMetIl 3150033 : AGGTCGGTGACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTGTATGAT : 3150087 140 : rIleGlySerValLeu<->AsnIleIleGlnGlyTyrLeuProTyrArgValTrpL : 157 !:!!..!|||:!!||| :!!.!!! !:!! !! ! ||| !!||||||!.!|||| eLeuSerSerLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgAlaTrpL 3150088 : CCTCTCTTCGTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAGCCTGGC : 3150144 158 : euProTyrAspSerAsnIleAlaThrMetPheTrpIleThrSerMetGlnGlnIle : 175 |||||!:!|||! !::!:!: !!||| !:!!::|||.!!! !:!:!!.|||||| euProPheAspTyrSerLeuProThrTyrTyrTyrIleAlaTyrValHisGlnIle 3150145 : TGCCCTTCGATTACTCTCTGCCAACTTACTATTACATCGCGTACGTTCATCAGATC : 3150198 176 : IleSerLeuIlePheAlaThrValIleAsnValGlyThrGluThrLeuIleSerGl : 194 :!!:!!|||||| !.!!:!!:!! ||||||!.! !!!:..!:!!|||!!!|| ValAlaLeuIleGlyThrSerLeuSerAsnValAlaCysAspValIleIleCysGl 3150199 : GTCGCGCTGATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCATCTGCGG : 3150255 195 : yPheIleLeuGlnThrCysAlaGlnIleGluIlePheGlnAsnArgLeuHisLysL : 213 |!!.:!!:!!!!..!!|||!.!||| ||||||.!!:!!:!!|||:!! ! :!!: yLeuLeuValHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMetLysGluM 3150256 : GTTGCTCGTTCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATGAAGGAGA : 3150312 214 : euMetIleAsnGln : 217 !!! ! .!.||| etThrGlnGluGln 3150313 : TGACGCAGGAACAG : 3150326 vulgar: CbirOr180 120 217 . KQ414646.1 3150032 3150326 + 142 M 24 72 G 0 3 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150033 3150326 142 + . gene_id 4 ; sequence CbirOr180 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150033 3150326 . + . KQ414646.1 exonerate:protein2genome:local exon 3150033 3150326 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150033 3150326 142 + . alignment_id 4 ; Query CbirOr180 ; Align 3150033 121 72 ; Align 3150108 145 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr180 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 117 -> 218 Target range: 3155391 -> 3155694 118 : ThrPheIleArgSerTyrSerIleLysTyrSerLeuLeuCysThrThrSerLeuTh : 136 ||| !! !|||!!! !|||! ! ! |||:!!:!!||| ! !:!!!!!:!!! ThrValCysArgArgSerSerThrTyrTyrAlaIleLeuValGluSerThrValMe 3155392 : ACCGTTTGCAGAAGAAGCTCAACCTATTACGCGATTCTGGTCGAATCGACGGTGAT : 3155446 137 : rGlyValThrIleGlySerValLeuAsnIleIleGlnGlyTyrLeuProTyrArgV : 155 ! !:!!:!!.!!|||:!!:!!|||!!. ! !..! !! !||||||||||||: tThrLeuSerPheGlyAlaLeuLeuLysProGluSerArgProLeuProTyrArgI 3155447 : GACTTTGTCTTTCGGTGCACTGTTGAAACCAGAATCACGTCCTTTACCGTATCGAA : 3155503 156 : alTrpLeuProTyrAspSerAsnIleAlaThrMetPheTrpIleThrSerMetGln : 173 !!|||||||||! !:!!! !!.! !! !! !:!!! ! !! !! ! leTrpLeuProCysAsnTyrThrProLeuIleThrTyrCysSerIleTyrThrLeu 3155504 : TTTGGCTACCTTGCAATTACACCCCGTTAATTACTTACTGTTCGATTTACACTCTC : 3155557 174 : GlnIleIleSerLeuIlePheAlaThrValIleAsnValGlyThrGluThrLeuIl : 192 ||| !:!::!!||| !.!.::!.!!:!!!!::!!|||!.! !!!:!:!||||| GlnCysValAlaLeuAlaLeuSerAlaMetMetHisValAlaCysAspSerLeuIl 3155558 : CAATGTGTGGCACTCGCTCTAAGCGCTATGATGCACGTCGCCTGCGACAGTTTGAT : 3155614 193 : eSerGlyPheIleLeuGlnThrCysAlaGlnIleGluIlePheGlnAsnArgLeuH : 211 |!!!|||.!.:!:|||!!.|||! !!.!||||||||||||.!! !|||||| eCysGlyLeuLeuLeuHisThrTyrGlyGlnIleGluIleLeuGlyCysArgLeuL 3155615 : CTGCGGCCTGCTGTTACACACTTACGGCCAGATCGAGATCCTCGGTTGTCGTCTGA : 3155671 212 : isLysLeuMetIleAsnGlnThr : 218 ::: |||:::::: ysThrIleLysGluAsnGluSer 3155672 : aaacgataaaagaaaacgagagt : 3155694 vulgar: CbirOr180 117 218 . KQ414646.1 3155391 3155694 + 123 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155392 3155694 123 + . gene_id 5 ; sequence CbirOr180 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155392 3155694 . + . KQ414646.1 exonerate:protein2genome:local exon 3155392 3155694 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155392 3155694 123 + . alignment_id 5 ; Query CbirOr180 ; Align 3155392 118 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr180 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 321 -> 382 Target range: 3165282 -> 3165539 322 : ValIleTyrGlnLeuAspTrpHisLeuLeuSerValSerGluLysLysAspLeuLe : 340 :!!|||!:!!!. !|||||| ! !|||!:! !!:!! ! !:!! ||||| MetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArgAlaLeuLe 3165283 : ATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGAGCACTTTT : 3165337 341 : uMetIleMetIleArgThrThrIleProIleLysPheThrSerSerPheLeuIleT : 359 |!!:!!:|||! !|||.!!..!! ||||||:!!|||||||||! ! !:!!:!!: uIleMetMetArgArgAlaValArgProIleGluPheThrSerIleHisValValS 3165338 : AATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCACGTTGTCT : 3165394 360 : hrLeuSerHisGluSerTyrSerAsn >>>> Target Intron 1 >>>> I : 368 !!:!!!:!! !||||||!:!! ! 74 bp : erValAsnLeuGluSerPheMetAla++ ++V 3165395 : CTGTGAATCTCGAATCCTTCATGGCAgt.........................agG : 3165495 369 : leLeuLysThrSerTyrSerAlaPheAsnLeuLeuGlnArgSer : 382 !!:!!||||||||||||||||||||||||:!!:!!|||!:!||| alIleLysThrSerTyrSerAlaPheAsnMetIleGlnGlnSer 3165496 : TAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAACAAAGC : 3165539 vulgar: CbirOr180 321 382 . KQ414646.1 3165282 3165539 + 108 M 46 138 5 0 2 I 0 70 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3165283 3165539 108 + . gene_id 6 ; sequence CbirOr180 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3165283 3165420 . + . KQ414646.1 exonerate:protein2genome:local exon 3165283 3165420 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165421 3165422 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165421 3165494 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3165493 3165494 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165495 3165539 . + . KQ414646.1 exonerate:protein2genome:local exon 3165495 3165539 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3165283 3165539 108 + . alignment_id 6 ; Query CbirOr180 ; Align 3165283 322 138 ; Align 3165495 368 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr180 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 247 -> 315 Target range: 3155805 -> 3156012 248 : GluTyrAlaLysThrValAsnIleIlePheAsnProIlePhePheValGlnPhePh : 266 ..!!:!.!! ! !:!!||| !|||.!. ! .!!|||..!|||||| ArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAl 3155806 : AGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGC : 3155860 267 : eSerSerIleIleValLeuCysThrSerValTyrTyrLeuSer<->GlnHisIleT : 284 !|||! :!:!.!:!!||| !!:!:!!||| |||!!! ..! !!:!:| aValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValT 3155861 : GGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGA : 3155917 285 : hrGluSerGlySerAlaThrPheIleValTyrThrIleGlyMetPheValGlnIle : 302 || !! ! !!! !!.! !.!.|||:!!|||!:!! ! !!|||.!!..!|||||| hrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIle 3155918 : CGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATA : 3155971 303 : TyrIleTyrCysTrpSerGlyAsnGluAlaIleLeuLys : 315 !:!||||||||||||! !|||||||||!.!! |||||| PheIleTyrCysTrpTyrGlyAsnGluValLysLeuLys 3155972 : TTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAG : 3156012 vulgar: CbirOr180 247 315 . KQ414646.1 3155805 3156012 + 105 M 33 99 G 0 3 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155806 3156012 105 + . gene_id 7 ; sequence CbirOr180 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155806 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155806 3156012 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155806 3156012 105 + . alignment_id 7 ; Query CbirOr180 ; Align 3155806 248 99 ; Align 3155908 281 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr180 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 321 -> 382 Target range: 3158754 -> 3159011 322 : ValIleTyrGlnLeuAspTrpHisLeuLeuSerValSerGluLysLysAspLeuLe : 340 :!!|||!:!!!. !|||||| ! !|||!:! !!:!! ! !:!! ||||| MetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArgAlaLeuLe 3158755 : ATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGAGCACTTTT : 3158809 341 : uMetIleMetIleArgThrThrIleProIleLysPheThrSerSerPheLeuIleT : 359 |!!:!!:|||! !|||.!!..!! ||||||:!!|||||||||! ! !:!!:!!: uIleMetMetArgArgAlaValArgProIleGluPheThrSerIleHisValValS 3158810 : AATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCACGTTGTCT : 3158866 360 : hrLeuSerHisGluSerTyrSerAsn >>>> Target Intron 1 >>>> I : 368 !!:!!!:!! !||||||!:!! ! 74 bp : erValAsnLeuGluSerPheMetAla++ ++V 3158867 : CTGTGAATCTCGAATCCTTCATGGCAgt.........................agG : 3158967 369 : leLeuLysThrSerTyrSerAlaPheAsnLeuLeuGlnArgSer : 382 !!:!!||||||:!!|||||||||||||||:!!:!!|||!:!||| alIleLysThrAlaTyrSerAlaPheAsnMetIleGlnGlnSer 3158968 : TAATAAAAACTGCGTACTCCGCGTTCAACATGATCCAACAAAGC : 3159011 vulgar: CbirOr180 321 382 . KQ414646.1 3158754 3159011 + 105 M 46 138 5 0 2 I 0 70 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158755 3159011 105 + . gene_id 8 ; sequence CbirOr180 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3158755 3158892 . + . KQ414646.1 exonerate:protein2genome:local exon 3158755 3158892 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158893 3158894 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158893 3158966 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3158965 3158966 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158967 3159011 . + . KQ414646.1 exonerate:protein2genome:local exon 3158967 3159011 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3158755 3159011 105 + . alignment_id 8 ; Query CbirOr180 ; Align 3158755 322 138 ; Align 3158967 368 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr180 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 150 -> 217 Target range: 3164409 -> 3164610 151 : LeuProTyrArgValTrpLeuProTyrAspSerAsnIleAlaThrMetPheTrpIl : 169 ||| !!:!|||!.!|||||||||||||||! !::! !||| !!!!:||| :! LeuMetPheArgAlaTrpLeuProTyrAspTyrSerProAlaProIlePheIleLe 3164410 : CTGATGTTTCGAGCATGGTTACCCTACGATTACTCCCCTGCGCCCATTTTTATCCT : 3164464 170 : eThrSerMetGlnGlnIleIleSerLeuIlePheAlaThrValIleAsnValGlyT : 188 !|||! !:!:!!.||| !|||:!! !! .!...! !..! !:!||| !. uThrPheValHisGlnAlaIleAlaAlaThrIleCysCysThrSerSerValThrV 3164465 : TACCTTCGTCCATCAAGCTATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTG : 3164521 189 : hrGluThrLeuIleSerGlyPheIleLeuGlnThrCysAlaGlnIleGluIlePhe : 206 .!!!::!!||| !!!!|||!!.:!::!!.!.! !! !..!|||.!!||||||.!. alAspSerLeuTyrThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeu 3164522 : TGGATTCTCTATACACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTA : 3164575 207 : GlnAsnArgLeuHisLysLeuMetIleAsnGln : 217 :!!:!!||||||...!!.:!!! ! !.!.||| GluHisArgLeuArgAsnValLysThrGluGln 3164576 : GAACATCGTCTAAGGAACGTTAAAACTGAGCAG : 3164610 vulgar: CbirOr180 150 217 . KQ414646.1 3164409 3164610 + 105 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164410 3164610 105 + . gene_id 9 ; sequence CbirOr180 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164410 3164610 . + . KQ414646.1 exonerate:protein2genome:local exon 3164410 3164610 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164410 3164610 105 + . alignment_id 9 ; Query CbirOr180 ; Align 3164410 151 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr180 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 152 -> 225 Target range: 3153210 -> 3153429 153 : TyrArgValTrpLeuProTyrAspSerAsnIleAlaThrMetPheTrpIleThrSe : 171 :::|||||||||||||||||||||!!!!.!! ! ! !!:!:||| :!:! !! PheArgValTrpLeuProTyrAspThrThrThrGlnProValPheThrLeuIleTy 3153211 : tttcgcgtCTGGTTACCTTACGACACTACTACACAACCTGTCTTCACTCTGATCTA : 3153265 172 : rMetGlnGlnIleIleSerLeuIlePheAlaThrValIleAsnValGlyThrGluT : 190 ! |||||||||:!!!!! ! !:!::!..! !||||||||| ! !!!: rCysGlnGlnIleValCysThrTrpTyrSerValAsnIleAsnValIleCysAspC 3153266 : CTGTCAACAGATCGTCTGCACGTGGTACAGCGTGAATATTAACGTCATTTGCGACT : 3153322 191 : hrLeuIleSerGlyPheIleLeuGlnThrCysAlaGlnIleGluIlePheGlnAsn : 208 !|||.!!||||||.!.!!::!!|||! !|||:!! :!!..!! .!.:!! ! ysLeuPheSerGlyLeuMetIleGlnIleCysSerIleLeuArgLysMetLysPro 3153323 : GCCTGTTCAGCGGCCTGATGATACAGATTTGCTCAATCTTACGGAAGATGAAACCT : 3153376 209 : ArgLeuHisLysLeuMetIleAsnGlnThrThrAlaTyrMetLysGlnSer : 225 ! !! !!..!!.! !:!!:!! ! ! !! ! !|||! !..|||||| ThrArgArgAsnCysValLeuValThrIleIleArgTyrThrSerGlnSer 3153377 : ACTCGGCGAAACTGTGTGCTCGTCACCATAATCAGATATACAAGCCAGTCT : 3153429 vulgar: CbirOr180 152 225 . KQ414646.1 3153210 3153429 + 104 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153211 3153429 104 + . gene_id 10 ; sequence CbirOr180 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153211 3153429 . + . KQ414646.1 exonerate:protein2genome:local exon 3153211 3153429 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153211 3153429 104 + . alignment_id 10 ; Query CbirOr180 ; Align 3153211 153 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr184 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 246 -> 313 Target range: 3155805 -> 3156012 247 : ArgIleAlaLysMetIleAsnAspValPheSerGluValIlePheValGlnPhePh : 265 |||.!!.!! |||||||||!!: !|||..! !!.!||||||..!|||||| ArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAl 3155806 : AGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGC : 3155860 266 : eAlaSerIleLeuValLeuCysSerSerLeuTyrHisLeuSerSerHisAlaIleV : 284 !.!|||! |||!.!:!!|||! !!:!||||||! |||!!!.!! ! !:!:. aValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValT 3155861 : GGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGA : 3155917 285 : alAspVal<-><->AlaProLeuIleValTyrAlaPheCysMetPheValGlnIle : 300 .! :!! !.! !:!!|||:!!|||::! !||||||.!!..!|||||| hrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIle 3155918 : CGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATA : 3155971 301 : PheValTyrCysTrpAlaGlyAsnGluValIleLeuLys : 313 |||:!!||||||||| !||||||||||||! |||||| PheIleTyrCysTrpTyrGlyAsnGluValLysLeuLys 3155972 : TTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAG : 3156012 vulgar: CbirOr184 246 313 . KQ414646.1 3155805 3156012 + 144 M 40 120 G 0 6 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155806 3156012 144 + . gene_id 1 ; sequence CbirOr184 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155806 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155806 3156012 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155806 3156012 144 + . alignment_id 1 ; Query CbirOr184 ; Align 3155806 247 120 ; Align 3155932 287 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr184 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 120 -> 220 Target range: 3180047 -> 3180350 121 : ArgSerHisSerIleSerTyrLeuLeuLeuAlaMetValSerAlaThrGlyThrVa : 139 |||!.!:!!:!!:!!!!!||| !:!!:!!!.! !:!!|||!.!.!!..!|||:! ArgLysAsnAlaValArgTyrThrMetValValGluMetSerValAlaSerThrIl 3180048 : AGGAAAAACGCTGTCAGATACACAATGGTAGTCGAGATGTCGGTCGCCTCGACTAT : 3180102 140 : lAlaGlyGlyLeuLeuAspThrLeuLys<->GlyGluLeuProTyrAsnThrTrpV : 157 ! !..!..!|||:!! !!.!!!!:!! |||..!||| !!|||!.. !||| eLeuAsnSerLeuValThrAsnPheGlnHisGlyArgLeuThrTyrArgGlyTrpP 3180103 : TTTAAACTCGTTAGTGACCAACTTTCAACACGGCAGACTAACCTACAGAGGCTGGT : 3180159 158 : alProTyrAspTyrThrSerSerLeuSerLeuTrpLeuThrSerLeuGlnGluSer : 175 !!|||||||||||||||!!!:!!:!! !!!! ||||||! ! !! !:!! ! heProTyrAspTyrThrThrAlaValLeuPheProLeuThrTyrAlaLeuGlnLeu 3180160 : TCCCTTACGATTACACGACCGCCGTACTTTTTCCATTGACATACGCTCTGCAGCTA : 3180213 176 : IleAlaValIleLeuGlyThrPheIleAsnValAlaThrGluThrSerValLeuGl : 194 :!!..!|||:!!:!! !:!!!::|||:!!|||:!!..!!!:! ! ! !!!!!|| LeuCysValLeuValTyrSerTrpIleHisValSerValAspIleLeuPhePheGl 3180214 : TTATGCGTGCTCGTATATTCCTGGATCCACGTTTCAGTGGATATTCTCTTCTTCGG : 3180270 195 : yPheCysLeuGlnThrCysAlaGlnLeuGluIleLeuLysHisArgLeuGlnArgM : 213 |.!.! :!!||| !|||..!|||!!!!!:|||||| |||......!!!! yLeuLeuMetGlnLeuCysCysGlnPheAspIleLeuPheSerArgPheSerSerI 3180271 : ACTGTTGATGCAACTGTGCTGTCAATTCGAcattctcttctctcgtttcAGTAGCA : 3180327 214 : etValAsnSerThrGluGlyIle : 220 !:..!:::..!!.!:!!|||:!! leThrSerGluAsnLysGlyVal 3180328 : TAACGTCGGAGAACAAGGGTGTT : 3180350 vulgar: CbirOr184 120 220 . KQ414646.1 3180047 3180350 + 135 M 28 84 G 0 3 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180048 3180350 135 + . gene_id 2 ; sequence CbirOr184 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180048 3180350 . + . KQ414646.1 exonerate:protein2genome:local exon 3180048 3180350 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180048 3180350 135 + . alignment_id 2 ; Query CbirOr184 ; Align 3180048 121 84 ; Align 3180135 149 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr184 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 312 -> 370 Target range: 3178743 -> 3178917 313 : LysSerThrGluLeuSerGluGlyValTyrGlnValAspTrpThrLeuIleThrVa : 331 :!!||| !:!!:!!.!!|||!.!:!!|||:!!:!!||||||||| !:!! !!.. GlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuProTh 3178744 : CAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCCCAC : 3178798 332 : lSerGluArgArgAspLeuLeuMetIleMetLysArgSerThrArgProIleLysL : 350 !..! !|||!:!|||||||||:!!|||||| !||||||! !||||||:!!|||: rAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValLysM 3178799 : CGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTAAAA : 3178855 351 : euThrSerSerPheLeuValThrLeuSerLeuThrSerTyrSerAsnLeuLeuLys : 368 !!||||||.!! !:!!|||..!|||||| ! !|||!:!! !::!:!! !!:! etThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerValSerArg 3178856 : TGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTTAGTAGA : 3178909 369 : AlaSer : 370 !||| IleSer 3178910 : ATTTCC : 3178917 vulgar: CbirOr184 312 370 . KQ414646.1 3178743 3178917 + 134 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178744 3178917 134 + . gene_id 3 ; sequence CbirOr184 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178744 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178744 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178744 3178917 134 + . alignment_id 3 ; Query CbirOr184 ; Align 3178744 313 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr184 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 118 -> 213 Target range: 3150026 -> 3150314 119 : IleIleArgSerHisSerIleSerTyrLeuLeuLeuAlaMetValSerAlaThrGl : 137 :!! !|||||| !!!|||! !||| !:!!|||!.! :!!!!!!.! ! ! LeuTyrArgSerValThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCy 3150027 : CTTTACAGGTCGGTGACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTG : 3150081 138 : yThrValAlaGlyGlyLeuLeu<->AspThrLeuLysGlyGluLeuProTyrAsnT : 155 !! !:!! !..!..!|||||| ||| ! !:!! !!|||||| !!|||!... sMetIleLeuSerSerLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgA 3150082 : TATGATCCTCTCTTCGTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAG : 3150138 156 : hrTrpValProTyrAspTyrThrSerSerLeuSerLeuTrpLeuThrSerLeuGln : 173 !!|||:!!|||!:!||||||:!! ! !! !! !! !!:::!!.!!! !:!!!!. laTrpLeuProPheAspTyrSerLeuProThrTyrTyrTyrIleAlaTyrValHis 3150139 : CCTGGCTGCCCTTCGATTACTCTCTGCCAACTTACTATTACATCGCGTACGTTCAT : 3150192 174 : GluSerIleAlaValIleLeuGlyThrPheIleAsnValAlaThrGluThrSerVa : 192 :!!! !:!!|||:!!||| ! !:!!.!! ||||||||| !!!:..!! !:! GlnIleValAlaLeuIleGlyThrSerLeuSerAsnValAlaCysAspValIleIl 3150193 : CAGATCGTCGCGCTGATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCAT : 3150249 193 : lLeuGlyPheCysLeuGlnThrCysAlaGlnLeuGluIleLeuLysHisArgLeuG : 211 !! !|||!!. !:!!!!..!!|||!.!|||! !||||||||||||||||||:!!: eCysGlyLeuLeuValHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMetL 3150250 : CTGCGGGTTGCTCGTTCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATGA : 3150306 212 : lnArgMet : 213 !!..!||| ysGluMet 3150307 : AGGAGATG : 3150314 vulgar: CbirOr184 118 213 . KQ414646.1 3150026 3150314 + 133 M 26 78 G 0 3 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150027 3150314 133 + . gene_id 4 ; sequence CbirOr184 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150027 3150314 . + . KQ414646.1 exonerate:protein2genome:local exon 3150027 3150314 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150027 3150314 133 + . alignment_id 4 ; Query CbirOr184 ; Align 3150027 119 78 ; Align 3150108 145 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr184 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 142 -> 213 Target range: 3157857 -> 3158070 143 : LeuLeuAspThrLeuLysGlyGluLeuProTyrAsnThrTrpValProTyrAspTy : 161 |||:!!||| ! !!!. !!:!!||| !!:!....!!|||:!!||||||||||| LeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrAspTy 3157858 : TTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACGATTA : 3157912 162 : rThrSerSerLeuSerLeuTrpLeuThrSerLeuGlnGluSerIleAlaValIleL : 180 |:!! !!:!!! !! !!!! |||||||||:!!!!.:!!:!!|||||| !! : rSerProAlaProIlePheIleLeuThrSerValHisGlnAlaIleAlaSerThrI 3157913 : CTCCCCTGCGCCCATTTTTATCCTTACCTCCGTCCATCAAGCTATAGCCTCGACGA : 3157969 181 : euGlyThrPheIleAsnValAlaThrGluThrSerValLeuGlyPheCysLeuGln : 198 !! !! ! ! !.!|||.!!..!!!:||| ! ! !|||!!.! :!!.!. leCysCysThrSerThrValThrValAspThrLeuTyrThrGlyLeuLeuIleAsn 3157970 : TATGTTGCACTTCGACCGTCACTGTGGATACTCTATACACTGGCTTGTTGATTAAT : 3158023 199 : ThrCysAlaGlnLeuGluIleLeuLysHisArgLeuGlnArgMet : 213 ! !! !..!|||!!!|||||||||:!!|||||||||::!!.!:!: IleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnVal 3158024 : ATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTT : 3158070 vulgar: CbirOr184 142 213 . KQ414646.1 3157857 3158070 + 111 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157858 3158070 111 + . gene_id 5 ; sequence CbirOr184 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3157858 3158070 . + . KQ414646.1 exonerate:protein2genome:local exon 3157858 3158070 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157858 3158070 111 + . alignment_id 5 ; Query CbirOr184 ; Align 3157858 143 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr184 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 120 -> 211 Target range: 3160053 -> 3160332 121 : ArgSerHisSerIleSerTyrLeuLeuLeuAlaMetValSerAlaThrGlyThrVa : 139 |||!.!! !|||!!::!!||| !:!!! !.!!:!::!!||||||||||||..! ArgLysLeuSerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValTr 3160054 : AGAAAGCTCTCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTATG : 3160108 140 : lAlaGlyGlyLeuLeuAspThrLeuLys<->GlyGluLeuProTyrAsnThrTrpV : 157 ! ! !..! !:!! .!!!!!!:! !!||||||||| !.....!|||: pMetLeuSerAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrpL 3160109 : GATGTTGTCGGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGGT : 3160165 158 : alProTyrAspTyrThrSerSerLeuSerLeuTrp<->LeuThrSerLeuGlnGlu : 174 !!|||!:!||||||! !:!!!!!|||.!!:!!!:: ||||||! ! ! ! :!! euProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGln 3160166 : TACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAG : 3160219 175 : SerIleAlaValIleLeuGlyThrPheIleAsnValAlaThrGluThrSerValLe : 193 ! !:!!.!!:!!|||!!! !||| ! ! !:!!!.!|||!!:!.! ! !! PheValThrLeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheSe 3160220 : TTTGTAACTCTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCAG : 3160276 194 : uGlyPheCysLeuGlnThrCysAlaGlnLeuGluIleLeuLysHisArgLeuGln : 211 !|||.!.! :!!!!.! !! !..!|||!!!|||||||||:!!|||||||||:!! rGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLys 3160277 : CGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAG : 3160332 vulgar: CbirOr184 120 211 . KQ414646.1 3160053 3160332 + 101 M 28 84 G 0 3 M 20 60 G 0 3 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160054 3160332 101 + . gene_id 6 ; sequence CbirOr184 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160054 3160332 . + . KQ414646.1 exonerate:protein2genome:local exon 3160054 3160332 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160054 3160332 101 + . alignment_id 6 ; Query CbirOr184 ; Align 3160054 121 84 ; Align 3160141 149 60 ; Align 3160204 169 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr184 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 118 -> 213 Target range: 3164310 -> 3164598 119 : IleIleArgSerHisSerIleSerTyrLeuLeuLeuAlaMetValSerAlaThrGl : 137 .!!.!!|||!!!:!!!!!|||.!!|||! ! !||| !:!::!!!!!||| ! ! PhePheArgTrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleCysAlaPheTr 3164311 : TTTTTTAGATGGAACACGATTGGCTACTGGAGTTTACTATTAATTTGTGCGTTCTG : 3164365 138 : yThrValAlaGlyGlyLeuLeu<->AspThrLeuLysGlyGluLeuProTyrAsnT : 155 !! ! !!.! !!..!|||||| ||| ! !!.. !!:!!||| !!:!.... pIleTyrValArgSerLeuLeuThrAspPheSerSerArgLysLeuMetPheArgA 3164366 : GATATACGTGAGATCGCTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAG : 3164422 156 : hrTrpValProTyrAspTyrThrSerSerLeuSerLeuTrpLeuThrSerLeuGln : 173 !!|||:!!||||||||||||:!! !!:!!! !! !!!! ||||||! !:!!!!. laTrpLeuProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHis 3164423 : CATGGTTACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCAT : 3164476 174 : GluSerIleAlaValIleLeuGlyThrPheIleAsnValAlaThrGluThrSerVa : 192 :!!:!!||||||!.!! :!! !! ! ! !:!|||.!!..!!!::!! ! GlnAlaIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTy 3164477 : CAAGCTATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATA : 3164533 193 : lLeuGlyPheCysLeuGlnThrCysAlaGlnLeuGluIleLeuLysHisArgLeuG : 211 ! !|||!!.! :!!.!.! !! !..!|||!!!|||||||||:!!|||||||||: rThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuA 3164534 : CACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAA : 3164590 212 : lnArgMet : 213 :!!.!:!: rgAsnVal 3164591 : GGAACGTT : 3164598 vulgar: CbirOr184 118 213 . KQ414646.1 3164310 3164598 + 100 M 26 78 G 0 3 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164311 3164598 100 + . gene_id 7 ; sequence CbirOr184 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164311 3164598 . + . KQ414646.1 exonerate:protein2genome:local exon 3164311 3164598 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164311 3164598 100 + . alignment_id 7 ; Query CbirOr184 ; Align 3164311 119 78 ; Align 3164392 145 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr179 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 217 Query range: 0 -> 210 Target range: 3159620 -> 3160332 1 : MetGlnIleLeuSerLeuAsnPheLeuLeuTyrThrIleGlyGlyValTrpArgPr : 19 |||!!.! |||..!|||:::!!. ! !! |||||| !!||| ! ||||| MetHisThrLeuGlnLeuSerLeuLysThrLeuThrIleCysGlyTyrIleArgPr 3159621 : ATGCACACGTTGCAATTGTCGTTGAAAACTTTGACGATTTGCGGCTACATAAGGCC : 3159675 20 : oIleGluTrpSerSerThrArgSerLysLeuLeuTyrAsnLeuPheThrPheTyrV : 38 |! !..!|||!.!||| !! !! !|||||||||||||||:!! !||| !! !| oThrSerTrpLysSerProGlyLeuLysLeuLeuTyrAsnValHisThrValThrV 3159676 : AACATCGTGGAAGTCACCGGGGCTAAAGCTTCTCTATAACGTACACACGGTTACTG : 3159732 39 : alIleCysSerLeuMetPheLeuLeuValThrGluLeuLeuAsnIleLeuPhe<-> : 56 ||:!: !|||! !!!!!!|||.!!:!!:!!|||:::|||:::||| alValValValLeuSerThrPhePheValAlaGlnIleLeuAspIleIlePheAsn 3159733 : TAGTGGTAGTTCTTAGCACGTTTTTCGTCGCCCAGATATTggacattattttcaac : 3159786 57 : ValAspAsnIleAspAspCysIleMetIleLeuMetIleLeuLeuSerIleValSe : 74 |||!!:||| !|||!!:! !! ! ! !!!! ||| !! !!!!:!::!!!: ValGluAsnGlnAspGluPheSerAspAsnPheCysIleThrCysCysValMetAs 3159787 : gtgGAGAATCAAGACGAGTTTAGCGACAATTTCTGCATAACGTGCTGCGTGATGAA : 3159843 75 : rCysIleCysLysMetPheIleValIleIleArgArgAspLysIleIleAsnIleI : 93 ! !!:!! ! |||:!!!:!! !:!!:!:||| !!|||!!:! !||| !|||:!!| nSerLeuGlyLysLeuTyrSerLeuLeuIleGlyArgGluMetIleGlnAsnLeuI 3159844 : CAGCCTTGGAAAGTTGTACAGCTTGCTGATAGGACGAGAAATGATCCAAAATTTAA : 3159900 94 : leGlyThrLeuArgGluLysProCysLysAlaCysThrGluAspGluMetAspIle : 111 ||! !:!!|||!:!... ! ||| !!:! !!! !|||! |||! !!:||| leAspSerLeuGlnSerAspProLeuArgProLeuAspGluValGluAsnGluIle 3159901 : TAGACTCGCTACAAAGTGACCCTCTTAGGCCGTTGGACGAAGTGGAGAATGAAATT : 3159954 112 : GlnLeuLysPheAspArgLeuIle{Ar} >>>> Target Intron 1 >>>> : 120 !:!|||!:! !!!:!:! !|||{..} 73 bp ArgLeuArgHisGluLysThrIle{Gl}++ + 3159955 : CGATTGAGACACGAGAAGACAATC{GA}gt.........................a : 3160054 121 : {g}SerGlnSerIleSerTyrLeuLeuLeuAlaLeuLeuSerLeuLeuGly<->G : 137 {!}!.!! |||!!::!!||| !:!!! !.!!:!!|||||| ! !||| +{u}LysLeuSerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValT 3160055 : g{A}AAGCTCTCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTAT : 3160108 138 : lyMetIleGlyAlaIleLeuGluThrLeuGluGlyThrLeuProTyrLysIleArg : 155 !!|||:!:..!|||!!: !! ! ! ! !! !|||||| !::!:!! !! rpMetLeuSerAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrp 3160109 : GGATGTTGTCGGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGG : 3160162 156 : ValProTyrAspCysSerSerLeuLeuSerLeuTrp<->LeuThrSerLeuGlnGl : 173 :!!|||!:!|||! !!!!:!! !|||.!!:!!!:: ||||||! ! ! ! :! LeuProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGl 3160163 : TTACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCA : 3160219 174 : uAsnIleGlyMetIleMetGlyThrPheIleAsnValAlaThrGluThrSerIleM : 192 ! !:!! !:!!|||.!. !||| ! ! !:!!!.!|||!!:!.! !.!!! nPheValThrLeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheS 3160220 : GTTTGTAACTCTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCA : 3160276 193 : etGlyPheCysLeuGlnMetCysAlaGlnPheGluIleLeuLysHisArgLeuGln : 210 |||.!.! :!!!!.!!:! !..!|||||||||||||||:!!|||||||||:!! erGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLys 3160277 : GCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAG : 3160330 vulgar: CbirOr179 0 210 . KQ414646.1 3159620 3160332 + 217 M 55 165 G 0 3 M 64 192 S 0 2 5 0 2 I 0 69 3 0 2 S 1 1 M 16 48 G 0 3 M 31 93 G 0 3 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3159621 3160332 217 + . gene_id 1 ; sequence CbirOr179 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3159621 3159982 . + . KQ414646.1 exonerate:protein2genome:local exon 3159621 3159982 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3159983 3159984 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3159983 3160055 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3160054 3160055 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3160056 3160332 . + . KQ414646.1 exonerate:protein2genome:local exon 3160056 3160332 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3159621 3160332 217 + . alignment_id 1 ; Query CbirOr179 ; Align 3159621 1 165 ; Align 3159789 56 192 ; Align 3160057 121 48 ; Align 3160108 137 93 ; Align 3160204 168 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr179 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 245 -> 312 Target range: 3155805 -> 3156012 246 : ArgAsnValArgMetValAsnAspIlePheSerValValIlePheIleGlnPhePh : 264 ||| !..! !|||:!!|||!!: !|||..!:!!!.!||||||! !|||||| ArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAl 3155806 : AGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGC : 3155860 265 : eAlaSerIleLeuIleLeuCysThrSerLeuTyrPheValTyrSerHisThrIleA : 283 !.!|||! ||| :!!||| !!:!||||||.!.:!! .!! !:!:. aValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValT 3155861 : GGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGA : 3155917 284 : laAspVal<-><->AlaProPheIleIleTyrAlaPheCysMetPheValGlnIle : 299 !! :!! !.! !.!.|||!!:|||::! !||||||.!!..!|||||| hrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIle 3155918 : CGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATA : 3155971 300 : PheValTyrCysTrpAlaGlyAsnGluValMetLeuGln : 312 |||:!!||||||||| !||||||||||||! !|||:!! PheIleTyrCysTrpTyrGlyAsnGluValLysLeuLys 3155972 : TTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAG : 3156012 vulgar: CbirOr179 245 312 . KQ414646.1 3155805 3156012 + 134 M 40 120 G 0 6 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155806 3156012 134 + . gene_id 2 ; sequence CbirOr179 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155806 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155806 3156012 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155806 3156012 134 + . alignment_id 2 ; Query CbirOr179 ; Align 3155806 246 120 ; Align 3155932 286 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr179 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 311 -> 369 Target range: 3178743 -> 3178917 312 : GlnSerThrGlyLeuSerGluGlyValTyrAspMetAspTrpThrLeuMetThrIl : 330 |||||| ! !:!!.!!|||!.!:!!|||!!:|||||||||||| !:!: !!! GlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuProTh 3178744 : CAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCCCAC : 3178798 331 : eAsnGluArgArgAspLeuLeuMetIleMetLysArgSerMetLysSerIleLysL : 349 !:!! !|||!:!|||||||||:!!|||||| !||||||! ::! !!:!!|||: rAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValLysM 3178799 : CGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTAAAA : 3178855 350 : euThrSerSerPheLeuValThrLeuSerLeuGluSerTyrSerAsnLeuLeuLys : 367 !!||||||.!! !:!!|||..!|||||| !||||||!:!! !::!:!! !!:! etThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerValSerArg 3178856 : TGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTTAGTAGA : 3178909 368 : ThrSer : 369 ! !||| IleSer 3178910 : ATTTCC : 3178917 vulgar: CbirOr179 311 369 . KQ414646.1 3178743 3178917 + 134 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178744 3178917 134 + . gene_id 3 ; sequence CbirOr179 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178744 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178744 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178744 3178917 134 + . alignment_id 3 ; Query CbirOr179 ; Align 3178744 312 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr179 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 117 -> 212 Target range: 3150026 -> 3150314 118 : LeuIleArgSerGlnSerIleSerTyrLeuLeuLeuAlaLeuLeuSerLeuLeuGl : 136 ||| !|||||| !!!!|||! !||| !:!!|||!.! !|||!!!:!!||| ! LeuTyrArgSerValThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCy 3150027 : CTTTACAGGTCGGTGACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTG : 3150081 137 : yGlyMetIleGlyAlaIleLeu<->GluThrLeuGluGlyThrLeuProTyrLysI : 154 ! !!!::!!..!:!!:!:||| !!: ! !||| !! !||| !!|||!:! sMetIleLeuSerSerLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgA 3150082 : TATGATCCTCTCTTCGTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAG : 3150138 155 : leArgValProTyrAspCysSerSerLeuLeuSerLeuTrpLeuThrSerLeuGln : 172 ! !!:!!|||!:!|||! !||| !! ! !! !! !!:::!!.!!! !:!!!!. laTrpLeuProPheAspTyrSerLeuProThrTyrTyrTyrIleAlaTyrValHis 3150139 : CCTGGCTGCCCTTCGATTACTCTCTGCCAACTTACTATTACATCGCGTACGTTCAT : 3150192 173 : GluAsnIleGlyMetIleMetGlyThrPheIleAsnValAlaThrGluThrSerIl : 191 :!!! !:!!!.!:!!||| !:!!.!! ||||||||| !!!:..!! !|| GlnIleValAlaLeuIleGlyThrSerLeuSerAsnValAlaCysAspValIleIl 3150193 : CAGATCGTCGCGCTGATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCAT : 3150249 192 : eMetGlyPheCysLeuGlnMetCysAlaGlnPheGluIleLeuLysHisArgLeuG : 210 | |||!!. !:!!!!. |||!.!||| ||||||||||||||||||:!!: eCysGlyLeuLeuValHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMetL 3150250 : CTGCGGGTTGCTCGTTCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATGA : 3150306 211 : lnArgMet : 212 !!..!||| ysGluMet 3150307 : AGGAGATG : 3150314 vulgar: CbirOr179 117 212 . KQ414646.1 3150026 3150314 + 111 M 26 78 G 0 3 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150027 3150314 111 + . gene_id 4 ; sequence CbirOr179 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150027 3150314 . + . KQ414646.1 exonerate:protein2genome:local exon 3150027 3150314 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150027 3150314 111 + . alignment_id 4 ; Query CbirOr179 ; Align 3150027 118 78 ; Align 3150108 144 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr179 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 148 -> 212 Target range: 3177997 -> 3178189 149 : ThrLeuProTyrLysIleArgValProTyrAspCysSerSerLeuLeuSerLeuTr : 167 ||||||||| ... ! !!||||||||||||! ||||||! ! !! !! ! ThrLeuProIleSerAspTrpValProTyrAspLeuSerSerGlnLysLeuTyrTh 3177998 : ACTTTGCCAATATCCGACTGGGTGCCTTACGATTTGTCCTCGCAAAAATTGTACAC : 3178052 168 : pLeuThrSerLeuGlnGluAsnIleGlyMetIleMetGlyThrPheIleAsnValA : 186 !:!!:!! !|||!!.:!!!..||||||:!!!!::!: !!.!! !! !!:!|||| rIleSerLeuLeuHisGlnThrIleGlyLeuMetValCysAlaAsnThrSerValA 3178053 : GATATCTCTGTTGCATCAAACGATAGGCCTGATGGTCTGTGCGAACACCAGCGTGG : 3178109 187 : laThrGluThrSerIleMetGlyPheCysLeuGlnMetCysAlaGlnPheGluIle : 204 ||!.!|||||| !||| |||.!. :!!||| !!||||||||||||||| laAsnGluThrLeuIleAlaGlyLeuMetIleGlnAlaGlyAlaGlnPheGluIle 3178110 : CAAACGAAACACTTATCGCAGGGCTGATGATACAAGCTGGCGCGCAATTCGAGATA : 3178163 205 : LeuLysHisArgLeuGlnArgMet : 212 !!! |||||| !::!!.!:!: PheCysHisArgAlaArgAsnLeu 3178164 : TTTTGCCATCGAGCGAGAAATCTA : 3178189 vulgar: CbirOr179 148 212 . KQ414646.1 3177997 3178189 + 109 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3177998 3178189 109 + . gene_id 5 ; sequence CbirOr179 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3177998 3178189 . + . KQ414646.1 exonerate:protein2genome:local exon 3177998 3178189 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3177998 3178189 109 + . alignment_id 5 ; Query CbirOr179 ; Align 3177998 149 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr187 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 810 Query range: 0 -> 367 Target range: 3149023 -> 3151146 1 : MetHisIleLeuGluLysThrPheIleIleLeuThrIleCysGlyCysTrpArgPr : 19 ||| !||||||..! !.!!|||! !||||||||||||||||||||||||||||| MetAlaIleLeuArgProAlaPheAsnIleLeuThrIleCysGlyCysTrpArgPr 3149024 : ATGGCTATCTTACGGCCAGCTTTCAACATACTGACGATCTGCGGATGCTGGAGGCC : 3149078 20 : oAsnSerTrpThrSerLeuTyrLysArgIleLeuTyrHisMetTyrThrValPheI : 38 | !|||!! !!!! ! ! !:! ! !||| !:!:||||||:!!|||: oCysSerCysArgThrThrArgAlaLysAlaAlaTyrIleValTyrThrMetPheV 3149079 : GTGCTCGTGCCGAACGACACGCGCCAAGGCCGCGTACATCGTTTACACGATGTTCG : 3149135 39 : lePheValLeuValAsnSerPheThrLeuSerGlnLeuLeuAspIleIleLeuIle : 56 !: ! :!!|||:!!:!!|||||| !:!:||||||......::::::||||||! ! alValLeuLeuLeuHisSerPheCysIleSerGlnPhePheAsnValIleLeuAsn 3149136 : TGGTACTTTTATTGCACAGCTTCTGCATctcgcaatttttcaacgtgatACTGAAC : 3149189 57 : ValAspAsnSerAspAspPheSerAspAsnPheTyrThrLeuLeuAlaMetIleVa : 75 :!! !..:!!|||!!:.!.|||!!:!:!||||||! !!!!:!!||| :!!:! LeuArgThrAlaAspGluLeuSerGluSerPheTyrMetPheIleAlaSerValLe 3149190 : TTGAGAACGGCGGACGAGCTGAGCGAGAGTTTCTACATGTTCATCGCGTCCGTTCT : 3149246 76 : lSerSerCysLysMetPheSerLeuLeuIleAsnArgAsnAsnIleAlaMetLeuI : 94 !|||!!!||||||!!: !!!!!||||||! |||!.!...!:!|||! !!!:||| uSerCysCysLysIleValThrLeuLeuThrAsnHisGlySerIleGluIleLeuA 3149247 : GTCCTGCTGCAAGATCGTCACGCTGCTGACGAACCACGGAAGCATCGAGATCCTCC : 3149303 95 : leAsnIleLeuMetGluLysProCysLysProPheArgLeuAsnGluValGluIle : 112 !..! !||| !|||:!!|||||||||||| ! !!! !.!.|||!.!! ||| rgArgArgLeuGluGluGluProCysLysProValSerAlaGluGluAlaValIle 3149304 : GGAGGAGACTGGAGGAGGAGCCGTGTAAACCTGTGAGCGCCGAGGAGGCTGTCATA : 3149357 113 : TyrHisArgPheAspLysSerIle{Gl} >>>> Target Intron 1 >>>> : 121 ! !!:!||||||!:!!:!|||{ } 649 bp GlnSerLysPheAspArgAsnIle{Gl}++ + 3149358 : CAGAGTAAATTCGACAGAAACATC{GG}gt.........................a : 3150033 122 : {n}ThrAsnThrIleHisTyrAlaIleLeuValGluThrThrCysIleSerValA : 139 {!}:!! ||||||:!!|||.!!|||||||||||| !||| !:!!!!!:!! +{y}SerValThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCysMetI 3150034 : g{G}TCGGTGACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTGTATGA : 3150087 140 : laIleThrSerLeuPheThrAsnPheAsnLysArgIleLeuThrPheArgAlaTrp : 157 !:!!:!!||||||.!! !:!!||||||:!!||| !|||.!!!:!||||||||| leLeuSerSerLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgAlaTrp 3150088 : TCCTCTCTTCGTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAGCCTGG : 3150141 158 : LeuProTyrAspTyrSerLeuProIleLeuPheTyrIleThrTyrIleHisGlnLe : 176 ||||||!:!|||||||||||||||! !! !!:!||||||.!!|||:!!||||||:! LeuProPheAspTyrSerLeuProThrTyrTyrTyrIleAlaTyrValHisGlnIl 3150142 : CTGCCCTTCGATTACTCTCTGCCAACTTACTATTACATCGCGTACGTTCATCAGAT : 3150198 177 : uIleGlyPheIleMetGlySerIleLeuHisLeuAlaCysAspGlyLeuIlePheG : 195 !:!!!.!.!.||| !|||:!!! !:!!:!!|||||||||! !:!!|||! !| eValAlaLeuIleGlyThrSerLeuSerAsnValAlaCysAspValIleIleCysG 3150199 : CGTCGCGCTGATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCATCTGCG : 3150255 196 : lyLeuLeuValHisIleTyrGlyGlnIleGluIleLeuGluSerArgLeuArgArg : 213 |||||||||||||| !! !|||||| |||||||||:!! !|||:!!!:!..! lyLeuLeuValHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMetLysGlu 3150256 : GGTTGCTCGTTCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATGAAGGAG : 3150309 214 : IleThrHisGluPro<->AspIleLeuArgGluCysIleLeuGlnHisAsnArgIl : 231 !!:|||!!.|||! ! ! !:!! !!:!! !:!!! ! |||:!! !:! MetThrGlnGluGlnArgProAsnIleGlyLysIleValArgPheHisAspTyrLe 3150310 : ATGACGCAGGAACAGAGGCCGAATATCGGGAAAATCGTTCGTTTCCACGATTATCT : 3150366 232 : eLeu{Ly} >>>> Target Intron 2 >>>> {s}PheAlaValLeuIleA : 239 !! !{ } 230 bp {!}!:!!.! !! !!!:. uTyr{Gl}++ ++{y}TyrValPheThrMetG 3150367 : TTAC{GG}gt.........................ag{G}TACGTTTTCACGATGC : 3150620 240 : snGluLysPheArgPheIleLeuSerIleGlnPheValValSerThrLeuValVal : 257 !.||||||||||||!::|||:!!.!!:!:|||.!!:!! !||||||||||||||| lnGluLysPheArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuValVal 3150621 : AAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGGTAGTG : 3150674 258 : CysPheAsnLeuPheGlnIleThrLysThrThrThrSerSerAlaLysTyrIleGl : 276 ||||||! !|||!:!:!!:!:.!!!!.||| !! !!! !|||:!!||||||:!:|| CysPheIleLeuTyrGluLeuAlaAsnThrProProIleSerSerLysTyrLeuGl 3150675 : TGTTTCATCCTGTACGAATTGGCGAACACGCCTCCAATCAGCTCCAAGTACCTGCA : 3150731 277 : nLeuAlaLeuTyrMetSerSerMetLeuThrGlnIlePhePheTyrCysTrpTyrG : 295 |!!!!.!||||||:!!:!!!!!|||:!!|||||||||||||||||||||||||||| nPheValLeuTyrLeuAlaCysMetMetThrGlnIlePhePheTyrCysTrpTyrG 3150732 : ATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATCTTCTTTTACTGCTGGTACG : 3150788 296 : lyAsnGluValLysLeuLys >>>> Target Intron 3 >>>> SerArgG : 304 ||.!.:!!:!!||||||||| 61 bp ||| !: lyGluGlnLeuLysLeuLys++ ++SerValG 3150789 : GCGAGCAGTTGAAACTGAAGgt.........................agAGCGTCG : 3150876 305 : lnLeuSerAsnAsnIlePheGluMetGluTrpSerThrLeuAspSerArgValLys : 322 !!:!! !..!!..||||||||||||!!:|||! ! !!|||.!.!:! !!:!!||| luIleValArgThrIlePheGluMetAspTrpIleProLeuGlnAsnGlyIleLys 3150877 : AGATTGTGCGCACGATCTTCGAAATGGATTGGATACCTCTCCAGAACGGTATCAAG : 3150930 323 : LysThrLeuLeuLeuIleMetArgArgSerThrValProIleGluPheThrSerSe : 341 ||| !|||:!!:!!:!: !||||||:!!! !:!!|||||||||!!.|||!!!:! LysAspLeuIleValValAlaArgArgAlaMetIleProIleGluLeuThrCysAl 3150931 : AAGGATTTGATAGTCGTGGCGAGAAGAGCGATGATCCCGATCGAGTTGACCTGCGC : 3150987 342 : rTyrIleIlePheMetAsnLeuAspSerPheValGly >>>> Target Intro : 354 !|||!!:.!! !|||:!!|||:!!!!!||||||.!! 79 bp aTyrMetPheThrMetAspLeuAsnThrPheValSer++ 3150988 : GTACATGTTCACCATGGACTTGAACACCTTCGTCAGCgt................. : 3151028 355 : n 4 >>>> LeuLeuLysThrSerTyrSerAlaTyrAsnIleLeuGlnGln : 367 |||||||||! !|||||||||.!!||||||:!:|||:!!::! ++LeuLeuLysMetSerTyrSerThrTyrAsnLeuLeuGluArg 3151029 : ........agCTGTTGAAAATGTCCTACTCGACGTACAATCTGCTTGAAAGG : 3151146 vulgar: CbirOr187 0 367 . KQ414646.1 3149023 3151146 + 810 M 120 360 S 0 2 5 0 2 I 0 645 3 0 2 S 1 1 M 97 291 G 0 3 M 14 42 S 0 2 5 0 2 I 0 226 3 0 2 S 1 1 M 68 204 5 0 2 I 0 57 3 0 2 M 52 156 5 0 2 I 0 75 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3149024 3151146 810 + . gene_id 1 ; sequence CbirOr187 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3149024 3149385 . + . KQ414646.1 exonerate:protein2genome:local exon 3149024 3149385 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3149386 3149387 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3149386 3150034 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150033 3150034 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150035 3150373 . + . KQ414646.1 exonerate:protein2genome:local exon 3150035 3150373 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150374 3150375 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150374 3150603 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3150602 3150603 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150604 3150808 . + . KQ414646.1 exonerate:protein2genome:local exon 3150604 3150808 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150809 3150810 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150809 3150869 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3150868 3150869 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150870 3151025 . + . KQ414646.1 exonerate:protein2genome:local exon 3150870 3151025 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3151026 3151027 . + . intron_id 4 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3151026 3151104 . + . intron_id 4 KQ414646.1 exonerate:protein2genome:local splice3 3151103 3151104 . + . intron_id 3 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3151105 3151146 . + . KQ414646.1 exonerate:protein2genome:local exon 3151105 3151146 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3149024 3151146 810 + . alignment_id 1 ; Query CbirOr187 ; Align 3149024 1 360 ; Align 3150036 122 291 ; Align 3150330 219 42 ; Align 3150605 234 204 ; Align 3150870 302 156 ; Align 3151105 354 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr187 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 751 Query range: 0 -> 367 Target range: 3163849 -> 3165536 1 : MetHisIleLeuGluLysThrPheIleIleLeuThrIleCysGlyCysTrpArgPr : 19 ||| !:!!|||:!!...|||! :!!:!:|||! !|||! !||||||!::! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 3163850 : ATGAGTGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTACCTGCC : 3163904 20 : oAsnSerTrpThrSerLeuTyrLysArgIleLeuTyrHisMetTyrThrValPheI : 38 |:!!|||||||||!!!! !!:!:!!||| !||||||:!!!!:||| !|||||| oHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheT 3163905 : CCATTCGTGGACAACGCCGTTCGAAAGGTCTTTGTACAATATCTACGGGGTGTTCT : 3163961 39 : lePheValLeuValAsnSerPheThrLeuSerGlnLeuLeuAspIleIleLeuIle : 56 !!!.:!!|||:!!!:!|||.!!.!!|||||||||:!!||||||:!! :!!! ! yrLeuLeuLeuLeuSerSerLeuAlaLeuSerGlnIleLeuAspValAlaIleAsn 3163962 : ACTTGCTTCTTCTAAGCAGCCTCGCCCTCTCGCAAATATTAGACGTAGCGATCAAC : 3164015 57 : ValAspAsnSerAspAspPheSerAspAsnPheTyrThrLeuLeuAlaMetIleVa : 75 |||!!:!:!..!||||||||||||||||||||| !!.!:!!.!!:! ValGluSerGlnAspAspPheSerAspAsnPheSerIleThrAlaValValPheLe 3164016 : GTGGAGAGCCAGGATGACTTCagtgacaatttttctatcaccGCTGTGGTGTTTCT : 3164072 76 : lSerSerCysLysMetPheSerLeuLeuIleAsnArgAsnAsnIleAlaMetLeuI : 94 !!!!!!!! !|||:!:! !! !|||||||||...|||...|||.!! !.!.|||| uThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuI 3164073 : CACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGA : 3164129 95 : leAsnIleLeuMetGluLysProCysLysProPheArgLeuAsnGluValGluIle : 112 ||:!!! |||..!.!.||||||! !..!||| ! ! !.!.||| !|||||| leAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIle 3164130 : TCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATT : 3164183 113 : TyrHisArgPheAspLysSerIle{Gl} >>>> Target Intron 1 >>>> : 121 !:!|||!!:|||! !! !{:!} 107 bp ArgAlaLysPheGluLysIleThr{Gl}++ + 3164184 : AGAGCGAAATTCGAGAAGATCACC{GA}gt.........................a : 3164317 122 : {n}ThrAsnThrIleHisTyrAlaIleLeuValGluThrThrCysIleSerValA : 139 {!} !||||||||| !||| !! !|||:!! !! ! !....!!!!!:!! +{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleCysAlaPheTrpIleT 3164318 : g{A}TGGAACACGATTGGCTACTGGAGTTTACTATTAATTTGTGCGTTCTGGATAT : 3164371 140 : laIleThrSerLeuPheThrAsnPheAsnLysArgIleLeuThrPheArgAlaTrp : 157 !:!:! !||||||!!.|||:!!|||!:!!..|||! !|||! !|||||||||||| yrValArgSerLeuLeuThrAspPheSerSerArgLysLeuMetPheArgAlaTrp 3164372 : ACGTGAGATCGCTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGCATGG : 3164425 158 : LeuProTyrAspTyrSerLeuProIleLeuPheTyrIleThrTyrIleHisGlnLe : 176 ||||||||||||||||||! ! !! !:!!||| !:!!|||!:!:!!|||||| LeuProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAl 3164426 : TTACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGC : 3164482 177 : uIleGlyPheIleMetGlySerIleLeuHisLeuAlaCysAspGlyLeuIlePheG : 195 !|||!.! ! !!: !!!!!! !! ! !:!!.!! |||..!||| ! !| aIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrG 3164483 : TATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTG : 3164539 196 : lyLeuLeuValHisIleTyrGlyGlnIleGluIleLeuGluSerArgLeuArgArg : 213 ||||||||:!!:!!|||||| !!|||.!!|||||||||||| !|||||||||!.! lyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsn 3164540 : GCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAAC : 3164593 214 : Ile<->ThrHisGluProAspIleLeuArgGluCysIleLeuGlnHisAsnArgIl : 231 :!! |||.!.:!! !||| !:!!!:!:!!||| !! !!!.|||:!!||||| ValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIl 3164594 : GTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTAT : 3164650 232 : eLeu{Ly} >>>> Target Intron 2 >>>> {s}PheAlaValLeuIleA : 239 |! !{:!} 325 bp {!}|||:!! ! !:!:| eTyr{Gl}++ ++{n}PheSerLysLysValA 3164651 : ATAC{CA}gt.........................ag{A}TTTTCGAAAAAGGTGA : 3164999 240 : snGluLysPheArgPheIleLeuSerIleGlnPheValValSerThrLeuValVal : 257 |||||:!!|||!:!.!.||||||! ! !|||||| !:!!|||! !! !|||:!! snGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIle 3165000 : ACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATC : 3165053 258 : CysPheAsnLeuPheGlnIleThrLysThrThrThrSerSerAlaLysTyrIleGl : 276 ||||||||||||!:!!:!!!:|||:!!! !! !! !...::: |||:::::::: CysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThr---LysPheValGl 3165054 : TGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacg---aaattcgtcga : 3165107 277 : nLeuAlaLeuTyrMetSerSerMetLeuThrGlnIlePhePheTyrCysTrpTyrG : 295 :::: !|||||| ! !!!!! :!!||||||||||||!:!||||||||||||| uIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrG 3165108 : aatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACG : 3165164 296 : lyAsnGluValLysLeuLys >>>> Target Intron 3 >>>> SerArgG : 304 ||||||||||||||! !||| 80 bp |||! !| lyAsnGluValLysHisLys++ ++SerLeuG 3165165 : GCAACGAAGTGAAACATAAGgt.........................agAGCCTCC : 3165271 305 : lnLeuSerAsnAsnIlePheGluMetGluTrpSerThrLeuAspSerArgValLys : 322 ||||| !! !!! ||||||.!.! !!:|||!!!:!!|||:!!!:!!.!|||! lnLeuProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThr 3165272 : AACTTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACC : 3165325 323 : LysThrLeuLeuLeuIleMetArgArgSerThrValProIleGluPheThrSerSe : 341 !:!.!!||||||:!!!!:|||||||||:!!..! !||||||||||||||||||! ArgAlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheThrSerIl 3165326 : AGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTAT : 3165382 342 : rTyrIleIlePheMetAsnLeuAspSerPheValGly >>>> Target Intro : 354 !:!!:!!:!!! !:!!||||||!!:||||||:!!!.! 74 bp eHisValValSerValAsnLeuGluSerPheMetAla++ 3165383 : TCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt................. : 3165423 355 : n 4 >>>> LeuLeuLysThrSerTyrSerAlaTyrAsnIleLeuGlnGln : 367 :!!:!!||||||||||||||||||!:!|||!!::!!|||||| ++ValIleLysThrSerTyrSerAlaPheAsnMetIleGlnGln 3165424 : ........agGTAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAACAA : 3165536 vulgar: CbirOr187 0 367 . KQ414646.1 3163849 3165536 + 751 M 120 360 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 93 279 G 0 3 M 18 54 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 38 114 G 1 0 M 29 87 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3163850 3165536 751 + . gene_id 2 ; sequence CbirOr187 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3163850 3164211 . + . KQ414646.1 exonerate:protein2genome:local exon 3163850 3164211 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164212 3164213 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164212 3164318 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3164317 3164318 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164319 3164657 . + . KQ414646.1 exonerate:protein2genome:local exon 3164319 3164657 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164658 3164659 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164658 3164982 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3164981 3164982 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164983 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164983 3165184 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3165185 3165186 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165185 3165264 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3165263 3165264 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165265 3165420 . + . KQ414646.1 exonerate:protein2genome:local exon 3165265 3165420 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165421 3165422 . + . intron_id 4 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165421 3165494 . + . intron_id 4 KQ414646.1 exonerate:protein2genome:local splice3 3165493 3165494 . + . intron_id 3 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165495 3165536 . + . KQ414646.1 exonerate:protein2genome:local exon 3165495 3165536 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3163850 3165536 751 + . alignment_id 2 ; Query CbirOr187 ; Align 3163850 1 360 ; Align 3164320 122 279 ; Align 3164602 215 54 ; Align 3164984 234 114 ; Align 3165098 273 87 ; Align 3165265 302 156 ; Align 3165495 354 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr187 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 739 Query range: 0 -> 367 Target range: 3157321 -> 3159008 1 : MetHisIleLeuGluLysThrPheIleIleLeuThrIleCysGlyCysTrpArgPr : 19 ||| !:!!|||:!!...|||! :!!:!:|||! !|||! !||||||!::! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 3157322 : ATGAGCGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTATCTGCC : 3157376 20 : oAsnSerTrpThrSerLeuTyrLysArgIleLeuTyrHisMetTyrThrValPheI : 38 |:!!|||||||||!!!! !!:!:!!||| !||||||:!!!!:||| !|||||| oHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheS 3157377 : CCATTCGTGGACAACACCGTTCGAAAGGTCTTTGTACAATATCTACGGGGtgttct : 3157433 39 : lePheValLeuValAsnSerPheThrLeuSerGlnLeuLeuAspIleIleLeuIle : 56 |||:::|||:::::!|||.!!..!|||||||||:!!||||||:!! :!!! ! erPheLeuLeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIleAsn 3157434 : cctttcttcttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCAAC : 3157487 57 : ValAspAsnSerAspAspPheSerAspAsnPheTyrThrLeuLeuAlaMetIleVa : 75 |||!!:!:!..!||||||||||||||||||||| ... ! !!.!:!!.!!:! ValGluSerGlnAspAspPheSerAspAsnPheSerValThrAlaValValPheLe 3157488 : GTGGAGAGCCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTTCT : 3157544 76 : lSerSerCysLysMetPheSerLeuLeuIleAsnArgAsnAsnIleAlaMetLeuI : 94 !!!!!!!! !|||:!:! !! !|||||||||...|||...|||.!! !.!.|||| uThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuI 3157545 : CACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGA : 3157601 95 : leAsnIleLeuMetGluLysProCysLysProPheArgLeuAsnGluValGluIle : 112 ||:!!! |||..!.!.||||||! !..!||| ! ! !.!.||| !|||||| leAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIle 3157602 : TCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATT : 3157655 113 : TyrHisArgPheAspLysSerIle{Gl} >>>> Target Intron 1 >>>> : 121 !:!|||!!:|||! !! !{:!} 107 bp ArgAlaLysPheGluLysIleThr{Gl}++ + 3157656 : AGAGCGAAATTCGAGAAGATCACC{GA}gt.........................a : 3157789 122 : {n}ThrAsnThrIleHisTyrAlaIleLeuValGluThrThrCysIleSerValA : 139 {!} !||||||||| !||| !! |||::: ::: .!!! !:!! +{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleT 3157790 : g{A}TGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATAT : 3157843 140 : laIleThrSerLeuPheThrAsnPheAsnLysArgIleLeuThrPheArgAlaTrp : 157 !:!:! !||||||!!.! !:!!|||!:!!!.|||! !|||! !|||||||||||| yrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrp 3157844 : ACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGG : 3157897 158 : LeuProTyrAspTyrSerLeuProIleLeuPheTyrIleThrTyrIleHisGlnLe : 176 :!!|||||||||||||||! ! !! !:!!||| !:!!|||! !:!!|||||| IleProTyrAspTyrSerProAlaProIlePheIleLeuThrSerValHisGlnAl 3157898 : ATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTCCGTCCATCAAGC : 3157954 177 : uIleGlyPheIleMetGlySerIleLeuHisLeuAlaCysAspGlyLeuIlePheG : 195 !|||!.!! ! !!: !!!!!! !! ! !:!!.!! ||| !||| ! !| aIleAlaSerThrIleCysCysThrSerThrValThrValAspThrLeuTyrThrG 3157955 : TATAGCCTCGACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTATACACTG : 3158011 196 : lyLeuLeuValHisIleTyrGlyGlnIleGluIleLeuGluSerArgLeuArgArg : 213 ||||||||:!!:!!|||||| !!|||.!!|||||||||||| !|||||||||!.! lyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsn 3158012 : GCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAAC : 3158065 214 : Ile<->ThrHisGluProAspIleLeuArgGluCysIleLeuGlnHisAsnArgIl : 231 :!! |||.!.:!! !||| !:!!!:!:!!||| !! !!!.|||:!!||||| ValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIl 3158066 : GTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTAT : 3158122 232 : eLeu{Ly} >>>> Target Intron 2 >>>> {s}PheAlaValLeuIleA : 239 |! !{:!} 325 bp {!}|||:!! ! !:!:| eTyr{Gl}++ ++{n}PheSerLysLysValA 3158123 : ATAC{CA}gt.........................ag{A}TTTTCGAAAAAGGTGA : 3158471 240 : snGluLysPheArgPheIleLeuSerIleGlnPheValValSerThrLeuValVal : 257 |||||:!!|||!:!.!.||||||! ! !|||||| !:!!|||! !! !|||:!! snGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIle 3158472 : ACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATC : 3158525 258 : CysPheAsnLeuPheGlnIleThrLysThrThrThrSerSerAlaLysTyrIleGl : 276 ||||||||||||!:!!:!!!:|||:!!! !! !! !...::: |||:::::::: CysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThr---LysPheValGl 3158526 : TGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacg---aaattcgtcga : 3158579 277 : nLeuAlaLeuTyrMetSerSerMetLeuThrGlnIlePhePheTyrCysTrpTyrG : 295 :::: !|||||| ! !!!!! :!!||||||||||||!:!||||||||||||| uIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrG 3158580 : aatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGTTGGTACG : 3158636 296 : lyAsnGluValLysLeuLys >>>> Target Intron 3 >>>> SerArgG : 304 |||||||||||||| !||| 80 bp |||! !| lyAsnGluValLysAspLys++ ++SerLeuG 3158637 : GCAACGAAGTGAAAGATAAGgt.........................agAGCCTCC : 3158743 305 : lnLeuSerAsnAsnIlePheGluMetGluTrpSerThrLeuAspSerArgValLys : 322 ||||| !! !!! ||||||.!.! !!:|||!!!:!!|||:!!!:!!.!|||! lnLeuProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThr 3158744 : AACTTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACC : 3158797 323 : LysThrLeuLeuLeuIleMetArgArgSerThrValProIleGluPheThrSerSe : 341 !:!.!!||||||:!!!!:|||||||||:!!..! !||||||||||||||||||! ArgAlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheThrSerIl 3158798 : AGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTAT : 3158854 342 : rTyrIleIlePheMetAsnLeuAspSerPheValGly >>>> Target Intro : 354 !:!!:!!:!!! !:!!||||||!!:||||||:!!!.! 74 bp eHisValValSerValAsnLeuGluSerPheMetAla++ 3158855 : TCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt................. : 3158895 355 : n 4 >>>> LeuLeuLysThrSerTyrSerAlaTyrAsnIleLeuGlnGln : 367 :!!:!!||||||:!!|||||||||!:!|||!!::!!|||||| ++ValIleLysThrAlaTyrSerAlaPheAsnMetIleGlnGln 3158896 : ........agGTAATAAAAACTGCGTACTCCGCGTTCAACATGATCCAACAA : 3159008 vulgar: CbirOr187 0 367 . KQ414646.1 3157321 3159008 + 739 M 120 360 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 93 279 G 0 3 M 18 54 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 38 114 G 1 0 M 29 87 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157322 3159008 739 + . gene_id 3 ; sequence CbirOr187 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3157322 3157683 . + . KQ414646.1 exonerate:protein2genome:local exon 3157322 3157683 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3157684 3157685 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3157684 3157790 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3157789 3157790 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3157791 3158129 . + . KQ414646.1 exonerate:protein2genome:local exon 3157791 3158129 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158130 3158131 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158130 3158454 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3158453 3158454 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158455 3158656 . + . KQ414646.1 exonerate:protein2genome:local exon 3158455 3158656 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3158657 3158658 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158657 3158736 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3158735 3158736 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158737 3158892 . + . KQ414646.1 exonerate:protein2genome:local exon 3158737 3158892 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158893 3158894 . + . intron_id 4 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158893 3158966 . + . intron_id 4 KQ414646.1 exonerate:protein2genome:local splice3 3158965 3158966 . + . intron_id 3 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158967 3159008 . + . KQ414646.1 exonerate:protein2genome:local exon 3158967 3159008 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157322 3159008 739 + . alignment_id 3 ; Query CbirOr187 ; Align 3157322 1 360 ; Align 3157792 122 279 ; Align 3158074 215 54 ; Align 3158456 234 114 ; Align 3158570 273 87 ; Align 3158737 302 156 ; Align 3158967 354 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr187 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 679 Query range: 0 -> 367 Target range: 3154921 -> 3156416 1 : MetHisIleLeuGluLysThrPheIleIleLeuThrIleCysGlyCysTrpArgPr : 19 ||||||:!!|||:!!||| !.!. !.!!! !.!!!!:|||||| !|||! !|| MetHisLeuLeuGlnLysGlnLeuGlnPheCysAlaMetCysGlyLeuTrpProPr 3154922 : ATGCATCTACTGCAAAAACAACTGCAATTTTGCGCAATGTGCGGTCTCTGGCCACC : 3154976 20 : oAsnSerTrpThrSerLeuTyrLysArgIleLeuTyrHisMetTyrThrValPheI : 38 | |||! .!! !!|||!:!||||||.!! !||| !:!:!:!:!! !!:!! oProSerSerAlaProLeuPheLysArgPheAlaTyrSerValPheSerTrpTyrT 3154977 : GCCATCATCAGCTCCGCTGTTTAAAAGATTCGCCTACTCTGTATTCTCGTGGTACA : 3155033 39 : lePheValLeuValAsnSerPheThrLeuSerGlnLeuLeuAspIleIleLeuIle : 56 !!.:!!|||||| !!! ! ..!!!!||||||:!!:!!|||:!!|||:!!! ! hrLeuIleLeuValTyrIleThrValPheSerGlnIleMetAspLeuIleValAsn 3155034 : CGTTAATACTGGTGTACATCACGGTTTTCAGCCAAATCATGGACCTAATCGTGAAC : 3155087 57 : ValAspAsnSerAspAspPheSerAspAsnPheTyrThrLeuLeuAlaMetIleVa : 75 ||| !.!..!|||!!:||||||||||||||||||! !||||||||| :! ValThrThrGlnAspGluPheSerAspAsnPheTyrIleLeuLeuAlaCysAlaIl 3155088 : GTGACGACTCAAGACGAGTTTAGCGACAATTTTTACATACTTCTGGCGTGTGCGAT : 3155144 76 : lSerSerCysLysMetPheSerLeuLeuIleAsnArgAsnAsnIleAlaMetLeuI : 94 !|||! ! ||| |||:!!|||! !!:!|||!!.|||:!! ! :!!| eSerLeuGlnLysAlaGlnSerValLeuAsnSerArgLysAsnValHisArgMetI 3155145 : ATCCTTGCAGAAAGCACAGAGTGTGTTAAACAGTCGTAAGAATGTCCACCGTATGA : 3155201 95 : leAsnIleLeuMetGluLysProCysLysProPheArgLeuAsnGluValGluIle : 112 ||:!!:!!|||! ...:!!|||! ! ! ||| !! !.!.|||:!!|||||| leAspLeuLeuAsnSerGluProPheHisProGluCysLysGluGluIleGluIle 3155202 : TCGATCTTTTGAACAGCGAACCTTTTCATCCAGAATGTAAGGAGGAAATCGAGATA : 3155255 113 : TyrHisArgPheAspLysSerIle{Gl} >>>> Target Intron 1 >>>> : 121 !|||.!!..!:!! ! !{::} 119 bp ArgSerArgIleSerGluHisAla{Ar}++ + 3155256 : AGAAGTAGGATCTCCGAGCACGCC{AG}gt.........................a : 3155401 122 : {n}ThrAsnThrIleHisTyrAlaIleLeuValGluThrThrCysIleSerValA : 139 {!}! !!:!:!!! !:!!||||||||||||||||||:!!||| !!:!!!:!!: +{g}ArgSerSerThrTyrTyrAlaIleLeuValGluSerThrValMetThrLeuS 3155402 : g{A}AGAAGCTCAACCTATTACGCGATTCTGGTCGAATCGACGGTGATGACTTTGT : 3155455 140 : laIleThrSerLeuPheThrAsnPheAsnLysArgIleLeuThrPheArgAlaTrp : 157 !!.!! !:!!|||!!.! ! .!...!||| !||| !!!:!||| !||| erPheGlyAlaLeuLeuLysPro---GluSerArgProLeuProTyrArgIleTrp 3155456 : CTTTCGGTGCACTGTTGAAACCA---GAATCACGTCCTTTACCGTATCGAATTTGG : 3155506 158 : LeuProTyrAspTyrSerLeuProIleLeuPheTyrIleThrTyrIleHisGlnLe : 176 ||||||! !:!!|||!!!! ! !||| !!:!! ! ! !|||! !! !|||! LeuProCysAsnTyrThrProLeuIleThrTyrCysSerIleTyrThrLeuGlnCy 3155507 : CTACCTTGCAATTACACCCCGTTAATTACTTACTGTTCGATTTACACTCTCCAATG : 3155563 177 : uIleGlyPheIleMetGlySerIleLeuHisLeuAlaCysAspGlyLeuIlePheG : 195 !:!:!.!.!! !:!:.!!:!!!!::!!|||:!!|||||||||.!!||||||! !| sValAlaLeuAlaLeuSerAlaMetMetHisValAlaCysAspSerLeuIleCysG 3155564 : TGTGGCACTCGCTCTAAGCGCTATGATGCACGTCGCCTGCGACAGTTTGATCTGCG : 3155620 196 : lyLeuLeuValHisIleTyrGlyGlnIleGluIleLeuGluSerArgLeuArgArg : 213 ||||||||:!!|||! !|||||||||||||||||||||! !!!||||||!:: lyLeuLeuLeuHisThrTyrGlyGlnIleGluIleLeuGlyCysArgLeuLysThr 3155621 : GCCTGCTGTTACACACTTACGGCCAGATCGAGATCCTCGGTTGTCGTCTGAaaacg : 3155674 214 : Ile<->ThrHisGluProAspIleLeuArgGluCysIleLeuGlnHisAsnArgIl : 231 ||| :::||| ! ! ! !!:! !|||:!!! ! ! :!!|||! !|| IleLysGluAsnGluSerLysThrSerLysLeuCysValArgTyrAsnAsnLeuIl 3155675 : ataaaagaaaacgagagtAAGACGTCCAAGTTGTGCGTTCGTTACAACAACCTTAT : 3155731 232 : eLeu{Ly} >>>> Target Intron 2 >>>> {s}PheAlaValLeuIleA : 239 |! !{::} 69 bp {!}|||.!!!.!:!!|||| eTyr{Ar}++ ++{g}PheThrAlaMetIleA 3155732 : CTAT{CG}gt.........................ag{A}TTCACCGCTATGATAA : 3155824 240 : snGluLysPheArgPheIleLeuSerIleGlnPheValValSerThrLeuValVal : 257 |||||:!!|||..!.!. :!!! !! !||||||!.!||||||||||||!.!:!! snGluGlnPheGluMetAlaIlePheThrGlnPheAlaValSerThrLeuAlaIle 3155825 : ACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGTGAGTACGCTGGCGATA : 3155878 258 : CysPheAsnLeuPheGlnIleThrLysThrThrThrSerSerAlaLysTyrIleGl : 276 ||||||||||||!:!! !:!!||| !:!! !..!!!! !! !!:!|||:!::! CysPheAsnLeuTyrLeuLeuThrGlySerAspValThrProIleArgTyrValGl 3155879 : TGCTTCAATCTTTACCTATTAACAGGATCAGATGTGACGCCGATTAGGTATGTGGA : 3155935 277 : nLeuAlaLeuTyrMetSerSerMetLeuThrGlnIlePhePheTyrCysTrpTyrG : 295 !:!! !:!!|||! |||!!!||||||||||||||||||.!!||||||||||||| uIleIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysTrpTyrG 3155936 : AATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTGGTACG : 3155992 296 : lyAsnGluValLysLeuLysSerArgGln >>>> Target Intron 3 >>>> : 305 |||||||||||||||||||| ! ! ! 73 bp lyAsnGluValLysLeuLysValSerTyr-+ 3155993 : GGAACGAAGTTAAGCTGAAGGTTTCTTATtt......................... : 3156024 306 : LeuSerAsnAsnIlePheGluMetGluTrpSerThrLeuAspSerArgValLys : 322 :!!||||||! ||||||.!.:!:!!:|||!!! !!!!!|||!.! !..!||| ++IleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAlaThrLys 3156025 : agATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGCTACAAAA : 3156146 323 : LysThrLeuLeuLeuIleMetArgArgSerThrValProIleGluPheThrSerSe : 341 ::!!.!:!!||| !!!:|||! !|||:!!:!! !|||||||||.!!! !||| ArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleIleSerVa 3156147 : CGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCATCAGCGT : 3156203 342 : rTyrIleIlePheMetAsnLeuAspSerPheValGly >>>> Target Intro : 354 ! !:!::!!! !:!!||||||||||||||||||!.! 133 bp lArgValLeuSerValAsnLeuAspSerPheValAla++ 3156204 : TCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt................. : 3156244 355 : n 4 >>>> LeuLeuLysThrSerTyrSerAlaTyrAsnIleLeuGlnGln : 367 ||||||||||||||||||||||||||||||:!!||||||!:: ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGlnArg 3156245 : ........agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAACGC : 3156416 vulgar: CbirOr187 0 367 . KQ414646.1 3154921 3156416 + 679 M 120 360 S 0 2 5 0 2 I 0 115 3 0 2 S 1 1 M 25 75 G 1 0 M 67 201 G 0 3 M 18 54 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 71 213 5 0 2 I 0 69 3 0 2 M 49 147 5 0 2 I 0 129 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3154922 3156416 679 + . gene_id 4 ; sequence CbirOr187 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3154922 3155283 . + . KQ414646.1 exonerate:protein2genome:local exon 3154922 3155283 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3155284 3155285 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3155284 3155402 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3155401 3155402 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3155403 3155738 . + . KQ414646.1 exonerate:protein2genome:local exon 3155403 3155738 . + . insertions 3 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3155739 3155740 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3155739 3155807 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3155806 3155807 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3155808 3156021 . + . KQ414646.1 exonerate:protein2genome:local exon 3155808 3156021 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156022 3156023 . + . intron_id 3 ; splice_site "TT" KQ414646.1 exonerate:protein2genome:local intron 3156022 3156094 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3156093 3156094 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156095 3156241 . + . KQ414646.1 exonerate:protein2genome:local exon 3156095 3156241 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156242 3156243 . + . intron_id 4 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156242 3156374 . + . intron_id 4 KQ414646.1 exonerate:protein2genome:local splice3 3156373 3156374 . + . intron_id 3 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156375 3156416 . + . KQ414646.1 exonerate:protein2genome:local exon 3156375 3156416 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3154922 3156416 679 + . alignment_id 4 ; Query CbirOr187 ; Align 3154922 1 360 ; Align 3155404 122 75 ; Align 3155479 148 201 ; Align 3155683 215 54 ; Align 3155809 234 213 ; Align 3156095 305 147 ; Align 3156375 354 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr187 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 352 Query range: 120 -> 303 Target range: 3180047 -> 3180673 121 : GlnThrAsnThrIleHisTyrAlaIleLeuValGluThrThrCysIleSerValAl : 139 ::!! !|||.!!:!!...|||.!!!!::!!||||||! !:!! ! !|||..! ArgLysAsnAlaValArgTyrThrMetValValGluMetSerValAlaSerThrIl 3180048 : AGGAAAAACGCTGTCAGATACACAATGGTAGTCGAGATGTCGGTCGCCTCGACTAT : 3180102 140 : aIleThrSerLeuPheThrAsnPheAsnLysArgIleLeuThrPheArgAlaTrpL : 158 !:!!!.!|||||| ! |||||||||.!. ! !!! !||||||!:!|||!.!|||! eLeuAsnSerLeuValThrAsnPheGlnHisGlyArgLeuThrTyrArgGlyTrpP 3180103 : TTTAAACTCGTTAGTGACCAACTTTCAACACGGCAGACTAACCTACAGAGGCTGGT : 3180159 159 : euProTyrAspTyrSerLeuProIleLeuPheTyrIleThrTyrIleHisGlnLeu : 176 !!||||||||||||!!! ! !!:!!|||||| :!:|||||| !! |||||| heProTyrAspTyrThrThrAlaValLeuPheProLeuThrTyrAlaLeuGlnLeu 3180160 : TCCCTTACGATTACACGACCGCCGTACTTTTTCCATTGACATACGCTCTGCAGCTA : 3180213 177 : IleGlyPheIleMetGlySerIleLeuHisLeuAlaCysAspGlyLeuIlePheGl : 195 :!! !! ! :!!:!: !||| :!!|||:!!:!! ||| !|||.!!||||| LeuCysValLeuValTyrSerTrpIleHisValSerValAspIleLeuPhePheGl 3180214 : TTATGCGTGCTCGTATATTCCTGGATCCACGTTTCAGTGGATATTCTCTTCTTCGG : 3180270 196 : yLeuLeuValHisIleTyrGlyGlnIleGluIleLeuGluSerArgLeuArgArgI : 214 |||||||:!!!!.:!:! ! !!|||.!!!!:|||||| ||||||...!!!!!!| yLeuLeuMetGlnLeuCysCysGlnPheAspIleLeuPheSerArgPheSerSerI 3180271 : ACTGTTGATGCAACTGTGCTGTCAATTCGAcattctcttctctcgtttcAGTAGCA : 3180327 215 : leThrHisGlu<->ProAspIleLeuArgGluCysIleLeuGlnHisAsnArgIle : 231 ||||| ||| !! !:!!||||||..!||||||! !!!.|||:!!|||||| leThrSerGluAsnLysGlyValLeuArgArgCysIleArgHisHisAspArgIle 3180328 : TAACGTCGGAGAACAAGGGTGTTTTACGAAGATGCATTCGTCATCACGACAGAATT : 3180381 232 : Leu{Ly} >>>> Target Intron 1 >>>> {s}PheAlaValLeuIleAs : 239 ! !{::} 74 bp {:}!!.|||! !:!!!!:|| Tyr{Ar}++ ++{g}LeuAlaGluIleMetAs 3180382 : TAC{CG}gt.........................ag{T}TTAGCTGAAATAATGAA : 3180479 240 : nGluLysPheArgPheIleLeuSerIleGlnPheValValSerThrLeuValValC : 258 |!!:!...!.!:!.!.! :!!! ! !|||||| !!! !||| !:!!|||:!!| nAspSerLeuGlnLeuThrMetPheAlaGlnPhePheGlySerPheMetValIleC 3180480 : CGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTTCGGAAGCTTTATGGTGATCT : 3180536 259 : ysPheAsnLeuPheGlnIleThrLysThrThrThrSerSerAlaLysTyrIleGln : 276 ||.!.!:!|||.!!|||:!: !!!..!! !! ! !|||.!!:!!!:!:!! ! ysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleLeuSerThrGluPheLeuAla 3180537 : GCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTCTCAGCACCGAATTCTTAGCG : 3180590 277 : LeuAlaLeuTyrMetSerSerMetLeuThrGlnIlePhePheTyrCysTrpTyrGl : 295 ! ...|||:::||||||:::||| !|||! !|||.!!|||||||||||||| ThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPheLeuTyrCysTrpTyrGl 3180591 : ACGAtattttatctgagctcgatACTGCTGCAGAGCTTTCTTTACTGTTGGTACGG : 3180647 296 : yAsnGluValLysLeuLysSerArg : 303 ||||||||||!:! !||| !||| yAsnGluValArgThrLysValArg 3180648 : AAACGAAGTGAGAACGAAGGTTCGC : 3180673 vulgar: CbirOr187 120 303 . KQ414646.1 3180047 3180673 + 352 M 97 291 G 0 3 M 15 45 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180048 3180673 352 + . gene_id 5 ; sequence CbirOr187 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3180048 3180388 . + . KQ414646.1 exonerate:protein2genome:local exon 3180048 3180388 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3180389 3180390 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3180389 3180462 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3180461 3180462 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3180463 3180673 . + . KQ414646.1 exonerate:protein2genome:local exon 3180463 3180673 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180048 3180673 352 + . alignment_id 5 ; Query CbirOr187 ; Align 3180048 121 291 ; Align 3180342 218 45 ; Align 3180464 234 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr187 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 242 Query range: 231 -> 351 Target range: 3160720 -> 3161151 232 : LeuLysPheAlaValLeuIleAsnGluLysPheArgPheIleLeuSerIleGlnPh : 250 !!!!:!||||||! !:!!||||||! !||||||!!!.!!! :!!:!!! ||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3160721 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3160775 251 : eValValSerThrLeuValValCysPheAsnLeuPheGlnIleThrLysThrThrT : 269 |:!!|||!!!|||:!!..!:!!|||||||||||||||!:!:!:|||:!!|||! !. eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3160776 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3160832 270 : hrSerSerAlaLysTyrIleGlnLeuAlaLeuTyrMetSerSerMetLeuThrGln : 287 .!! !||| :!! !:!! !||| !! !!:!||| !|||:!!!!!.!!||| alTyrSer---GlnValLeuAlaLeuIleProPheMetValSerValPheAlaGln 3160833 : TGTATTCG---CAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAG : 3160883 288 : IlePhePheTyrCysTrpTyrGlyAsnGluValLysLeuLysSerArg{G} >>> : 304 ||||||!:!! !||||||||||||||||||..!|||:!!||| !|||{:} IlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLysValArg{G}-+ 3160884 : ATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGGTACGT{G}at... : 3160937 305 : > Target Intron 1 >>>> {ln}LeuSerAsnAsnIlePheGluMetGluT : 314 74 bp {!!}:!!!!!:!!!..:!!||||||! .!.| -+{lu}IleCysAspThrValPheGluSerAsnT 3160938 : ......................tg{AA}ATTTGCGACACAGTATTCGAAAGCAACT : 3161038 315 : rpSerThrLeuAspSerArgValLysLysThrLeuLeuLeuIleMetArgArgSer : 332 ||!!!.!!|||..!..!!!!..!||||||||||||||| !|||||| !|||||| rpThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgSer 3161039 : GGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCG : 3161092 333 : ThrValProIleGluPheThrSerSerTyrIleIlePheMetAsnLeuAspSerPh : 351 ! !|||||||||||||||.!!:!!!:!:!!.!! !:!:||||||!!:||||| LeuLysProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSerPh 3161093 : TTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTT : 3161149 352 : e : 351 | e 3161150 : T : 3161151 vulgar: CbirOr187 231 351 . KQ414646.1 3160720 3161151 + 242 M 40 120 G 1 0 M 31 93 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160721 3161151 242 + . gene_id 6 ; sequence CbirOr187 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3160721 3160934 . + . KQ414646.1 exonerate:protein2genome:local exon 3160721 3160934 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3160935 3160936 . + . intron_id 1 ; splice_site "AT" KQ414646.1 exonerate:protein2genome:local intron 3160935 3161008 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3161007 3161008 . + . intron_id 0 ; splice_site "TG" KQ414646.1 exonerate:protein2genome:local cds 3161009 3161151 . + . KQ414646.1 exonerate:protein2genome:local exon 3161009 3161151 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160721 3161151 242 + . alignment_id 6 ; Query CbirOr187 ; Align 3160721 232 120 ; Align 3160841 273 93 ; Align 3161011 305 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr187 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 242 Query range: 231 -> 351 Target range: 3174931 -> 3175362 232 : LeuLysPheAlaValLeuIleAsnGluLysPheArgPheIleLeuSerIleGlnPh : 250 !!!!:!||||||! !:!!||||||! !||||||!!!.!!! :!!:!!! ||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3174932 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3174986 251 : eValValSerThrLeuValValCysPheAsnLeuPheGlnIleThrLysThrThrT : 269 |:!!|||!!!|||:!!..!:!!|||||||||||||||!:!:!:|||:!!|||! !. eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3174987 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3175043 270 : hrSerSerAlaLysTyrIleGlnLeuAlaLeuTyrMetSerSerMetLeuThrGln : 287 .!! !||| :!! !:!! !||| !! !!:!||| !|||:!!!!!.!!||| alTyrSer---GlnValLeuAlaLeuIleProPheMetValSerValPheAlaGln 3175044 : TGTATTCG---CAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAG : 3175094 288 : IlePhePheTyrCysTrpTyrGlyAsnGluValLysLeuLysSerArg{G} >>> : 304 ||||||!:!! !||||||||||||||||||..!|||:!!||| !|||{:} IlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLysValArg{G}-+ 3175095 : ATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGGTACGT{G}at... : 3175148 305 : > Target Intron 1 >>>> {ln}LeuSerAsnAsnIlePheGluMetGluT : 314 74 bp {!!}:!!!!!:!!!..:!!||||||! .!.| -+{lu}IleCysAspThrValPheGluSerAsnT 3175149 : ......................tg{AA}ATTTGCGACACAGTATTCGAAAGCAACT : 3175249 315 : rpSerThrLeuAspSerArgValLysLysThrLeuLeuLeuIleMetArgArgSer : 332 ||!!!.!!|||..!..!!!!..!||||||||||||||| !|||||| !|||||| rpThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgSer 3175250 : GGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCG : 3175303 333 : ThrValProIleGluPheThrSerSerTyrIleIlePheMetAsnLeuAspSerPh : 351 ! !|||||||||||||||.!!:!!!:!:!!.!! !:!:||||||!!:||||| LeuLysProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSerPh 3175304 : TTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTT : 3175360 352 : e : 351 | e 3175361 : T : 3175362 vulgar: CbirOr187 231 351 . KQ414646.1 3174931 3175362 + 242 M 40 120 G 1 0 M 31 93 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174932 3175362 242 + . gene_id 7 ; sequence CbirOr187 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3174932 3175145 . + . KQ414646.1 exonerate:protein2genome:local exon 3174932 3175145 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3175146 3175147 . + . intron_id 1 ; splice_site "AT" KQ414646.1 exonerate:protein2genome:local intron 3175146 3175219 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3175218 3175219 . + . intron_id 0 ; splice_site "TG" KQ414646.1 exonerate:protein2genome:local cds 3175220 3175362 . + . KQ414646.1 exonerate:protein2genome:local exon 3175220 3175362 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3174932 3175362 242 + . alignment_id 7 ; Query CbirOr187 ; Align 3174932 232 120 ; Align 3175052 273 93 ; Align 3175222 305 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr187 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 234 Query range: 0 -> 121 Target range: 3159620 -> 3159983 1 : MetHisIleLeuGluLysThrPheIleIleLeuThrIleCysGlyCysTrpArgPr : 19 ||||||! |||:!! !:!!!!.! !! !|||||||||||||||! ! ||||| MetHisThrLeuGlnLeuSerLeuLysThrLeuThrIleCysGlyTyrIleArgPr 3159621 : ATGCACACGTTGCAATTGTCGTTGAAAACTTTGACGATTTGCGGCTACATAAGGCC : 3159675 20 : oAsnSerTrpThrSerLeuTyrLysArgIleLeuTyrHisMetTyrThrValPheI : 38 |!..||||||! !|||! ! !!:!:!!||||||:!!:!::!!|||||| !: oThrSerTrpLysSerProGlyLeuLysLeuLeuTyrAsnValHisThrValThrV 3159676 : AACATCGTGGAAGTCACCGGGGCTAAAGCTTCTCTATAACGTACACACGGTTACTG : 3159732 39 : lePheValLeuValAsnSerPheThrLeuSerGlnLeuLeuAspIleIleLeuIle : 56 !! ! |||:!!:!!!:!!!!||| !:!!:!!|||:!!||||||||||||... alValValValLeuSerThrPhePheValAlaGlnIleLeuAspIleIlePheAsn 3159733 : TAGTGGTAGTTCTTAGCACGTTTTTCGTCGCCCAGATATTggacattattttcaac : 3159786 57 : ValAspAsnSerAspAspPheSerAspAsnPheTyrThrLeuLeuAlaMetIleVa : 75 |||!!:|||..!|||!!:|||||||||||||||! !! ! !! !..!:!!!!: ValGluAsnGlnAspGluPheSerAspAsnPheCysIleThrCysCysValMetAs 3159787 : gtgGAGAATCAAGACGAGTTTAGCGACAATTTCTGCATAACGTGCTGCGTGATGAA : 3159843 76 : lSerSerCysLysMetPheSerLeuLeuIleAsnArgAsnAsnIleAlaMetLeuI : 94 !||| ! ! |||:!!!:!||||||||||||...|||.!.! ||| !! |||| nSerLeuGlyLysLeuTyrSerLeuLeuIleGlyArgGluMetIleGlnAsnLeuI 3159844 : CAGCCTTGGAAAGTTGTACAGCTTGCTGATAGGACGAGAAATGATCCAAAATTTAA : 3159900 95 : leAsnIleLeuMetGluLysProCysLysProPheArgLeuAsnGluValGluIle : 112 ||:!! |||...... ! ||| !!:!|||!!. ! ! ||| !|||||| leAspSerLeuGlnSerAspProLeuArgProLeuAspGluValGluAsnGluIle 3159901 : TAGACTCGCTACAAAGTGACCCTCTTAGGCCGTTGGACGAAGTGGAGAATGAAATT : 3159954 113 : TyrHisArgPheAspLysSerIleGln : 121 ||| !!!:|||!!!|||:!! ArgLeuArgHisGluLysThrIleGlu 3159955 : CGATTGAGACACGAGAAGACAATCGAG : 3159983 vulgar: CbirOr187 0 121 . KQ414646.1 3159620 3159983 + 234 M 121 363 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3159621 3159983 234 + . gene_id 8 ; sequence CbirOr187 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3159621 3159983 . + . KQ414646.1 exonerate:protein2genome:local exon 3159621 3159983 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3159621 3159983 234 + . alignment_id 8 ; Query CbirOr187 ; Align 3159621 1 363 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr187 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 214 Query range: 122 -> 297 Target range: 3153117 -> 3153645 123 : AsnThrIleHisTyrAlaIleLeuValGluThrThrCysIleSerValAlaIleTh : 141 |||.!!! !|||.!! !!!!:!!!!:! ! ! :!! !:!! !||||| AsnAlaLysAlaTyrThrTyrPheLeuAspIleLeuValValValLeuTrpIleTh 3153118 : AACGCTAAGGCTTACACATATTTCCTGGACATCTTGGTAGTCGTTTTATGGATAAC : 3153172 142 : rSerLeuPheThrAsnPheAsnLysArgIleLeuThrPheArgAlaTrpLeuProT : 160 ||||! !||||||:!!!:!!..:::||| ... ||||||..!|||||||||| rSerTyrPheThrAspTyrArgArgArgLysPheLysPheArgValTrpLeuProT 3153173 : ATCGTACTTCACGGACTACAGGcgcagaaaattcaaatttcgcgtCTGGTTACCTT : 3153229 161 : yrAspTyrSerLeuProIleLeuPheTyrIleThrTyrIleHisGlnLeuIleGly : 178 ||||| !!!! !! ! !:!!||| !:!:! !||| !!!.|||:!!:!! !! yrAspThrThrThrGlnProValPheThrLeuIleTyrCysGlnGlnIleValCys 3153230 : ACGACACTACTACACAACCTGTCTTCACTCTGATCTACTGTCAACAGATCGTCTGC : 3153283 179 : PheIleMetGlySerIleLeuHisLeuAlaCysAspGlyLeuIlePheGlyLeuLe : 197 .!! !! !:!!:!!:!! !|||||| !!|||.!! !||||||:! ThrTrpTyrSerValAsnIleAsnValIleCysAspCysLeuPheSerGlyLeuMe 3153284 : ACGTGGTACAGCGTGAATATTAACGTCATTTGCGACTGCCTGTTCAGCGGCCTGAT : 3153340 198 : uValHisIleTyrGlyGlnIleGluIleLeuGluSerArgLeuArgArgIleThrH : 216 !:!!!!.|||! !..! :!!..!! :!!:!! !!! !! !|||!.! !..!! tIleGlnIleCysSerIleLeuArgLysMetLysProThrArgArgAsnCysValL 3153341 : GATACAGATTTGCTCAATCTTACGGAAGATGAAACCTACTCGGCGAAACTGTGTGC : 3153397 217 : isGluProAspIle<-><->LeuArgGluCysIleLeuGlnHisAsnArgIleLeu : 232 !! !! ||| !!!!:!!! ! ::: ...||| :!! euValThrIleIleArgTyrThrSerGlnSerArgGlnGluIleLysArgTyrVal 3153398 : TCGTCACCATAATCAGATATACAAGCCAGTCTCGacaagaaattaaacgatacgTT : 3153451 233 : LysPheAlaValLeuIleAsnGluLysPheArgPheIleLeuSerIleGlnPheVa : 251 !!!.||| !:!!:!:|||||||||.!! !! !:!!! !||||||||||||!. ***LeuAlaGlnIleValAsnGluLysLeuGlyAsnValSerSerIleGlnPheAl 3153452 : TGATTGGCGCAAATAGTGAACGAGAAGCTTGGAAATGTCTCGAGTATACAGTTCGC : 3153508 252 : lValSerThrLeuValValCysPheAsnLeuPheGlnIleThrLysThrThrThrS : 270 !:!!|||||| !!.!:!!||||||||||||!:!!:!!!::!! ..!! ! ! aIleSerThrGlyAlaIleCysPheAsnLeuTyrArgMetSer---ValIleGluL 3153509 : GATAAGCACAGGAGCGATATGCTTCAATCTCTATCGAATGTCG---GTGATAGAAC : 3153562 271 : erSerAlaLysTyrIleGlnLeuAlaLeuTyrMetSerSerMetLeuThrGlnIle : 288 !.!! !!|||!:!:!::!! ! ! ! !! !!!!:!:|||.!!|||||| euGlyProLysPheValGluAlaLeuThrIleThrValCysLeuLeuAlaGlnIle 3153563 : TCGGTCCAAAGTTTGTGGAAGCGTTAACTATCACAGTATGCTTACTCGCGCAGATA : 3153616 289 : PhePheTyrCysTrpTyrGlyAsnGlu : 297 |||!:!||||||||||||||||||::: PheTyrTyrCysTrpTyrGlyAsnAsp 3153617 : TTTTACTATTGTTGGTAcggtaacgat : 3153645 vulgar: CbirOr187 122 297 . KQ414646.1 3153117 3153645 + 214 M 98 294 G 0 6 M 45 135 G 1 0 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153118 3153645 214 + . gene_id 9 ; sequence CbirOr187 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153118 3153645 . + . KQ414646.1 exonerate:protein2genome:local exon 3153118 3153645 . + . insertions 6 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3153118 3153645 214 + . alignment_id 9 ; Query CbirOr187 ; Align 3153118 123 294 ; Align 3153418 221 135 ; Align 3153553 267 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr187 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 163 Query range: 228 -> 301 Target range: 3178372 -> 3178591 229 : AsnArgIleLeuLysPheAlaValLeuIleAsnGluLysPheArgPheIleLeuSe : 247 ||| ||| :::|||.!! ! !:!:||| !|||!:!!:!!!::!!! AsnPheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePh 3178373 : aatttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTT : 3178427 248 : rIleGlnPheValValSerThrLeuValValCysPheAsnLeuPheGlnIleThrL : 266 !:!:|||||| !:!!|||:!! !|||:!!|||!!.!:!:!!!:!:!!!!::!!! eLeuGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerT 3178428 : CCTGCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGA : 3178484 267 : ysThrThrThrSerSerAlaLysTyrIleGlnLeuAlaLeuTyrMetSerSerMet : 284 !! !!.! !!! !||| !!!.!:!:!! !! !|||! !|||:!:!!!!!!||| hrIleAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMet 3178485 : CGATTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATG : 3178538 285 : LeuThrGlnIlePhePheTyrCysTrpTyrGlyAsnGluValLysLeuLys : 301 |||||||||:!:!:!!!.|||||||||!:!||||||||||||! !|||||| LeuThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys 3178539 : CTCACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: CbirOr187 228 301 . KQ414646.1 3178372 3178591 + 163 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178373 3178591 163 + . gene_id 10 ; sequence CbirOr187 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178373 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178373 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178373 3178591 163 + . alignment_id 10 ; Query CbirOr187 ; Align 3178373 229 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr187 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 123 -> 234 Target range: 3160062 -> 3160401 124 : ThrIleHisTyrAlaIleLeuValGluThrThrCysIleSerValAlaIleThrSe : 142 :!!!!: !|||.!!:!!! !..!! ! !!:!...! !.!!||| !!!: !|| SerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValTrpMetLeuSe 3160063 : TCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTATGGATGTTGTC : 3160117 143 : rLeuPheThrAsnPheAsnLysArgIleLeuThrPheArgAlaTrpLeuProTyrA : 161 | !.!.||| |||!..! ||| ||| !!.!!|||!.!|||||||||!:!| rAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrpLeuProPheA 3160118 : GGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGGTTACCTTTCG : 3160174 162 : spTyrSerLeuProIle<->LeuPheTyrIleThrTyrIleHisGlnLeuIleGly : 178 |||||!!! ! !!:!: :!!||| !:!!|||||| !:!!|||!!!:!! ! spTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGlnPheValThr 3160175 : ATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAGTTTGTAACT : 3160228 179 : PheIleMetGlySerIleLeuHisLeuAlaCysAspGlyLeuIlePheGlyLeuLe : 197 .!.|||.!. !!!!! ! ! !:!!!.! !|||..!|||.!! !|||||||| LeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheSerGlyLeuLe 3160229 : CTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCAGCGGACTGTT : 3160285 198 : uValHisIleTyrGlyGlnIleGluIleLeuGluSerArgLeuArgArgIleThrH : 216 |:!!||||||||| !!|||.!!|||||||||:!! !||||||!:!!!!|||! !! uIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysSerIleLysP 3160286 : GATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGAGCATTAAAC : 3160342 217 : isGluProAspIle<->LeuArgGluCysIleLeuGlnHisAsnArgIleLeuLys : 233 !!!: !!!: ! !!:!:!!||| !!!!!!.||| !!||||||! !||| roAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrArgIleTyrLys 3160343 : CTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGCATATACAAG : 3160396 234 : Phe : 234 ||| Phe 3160397 : TTT : 3160401 vulgar: CbirOr187 123 234 . KQ414646.1 3160062 3160401 + 159 M 43 129 G 0 3 M 54 162 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160063 3160401 159 + . gene_id 11 ; sequence CbirOr187 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160063 3160401 . + . KQ414646.1 exonerate:protein2genome:local exon 3160063 3160401 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160063 3160401 159 + . alignment_id 11 ; Query CbirOr187 ; Align 3160063 124 129 ; Align 3160195 167 162 ; Align 3160360 221 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr187 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 137 -> 234 Target range: 3174314 -> 3174612 138 : ValAlaIleThrSerLeuPheThrAsnPheAsnLysArgIleLeuThrPheArgAl : 156 ::: .!!:!!|||:!!|||||| !|||!!.! ||| ||| !!.!!|||!. IleTrpPheSerSerIlePheThrAlaPheLysIleArgGluLeuProLeuArgGl 3174315 : atatggTTCTCGTCGATCTTCACGGCTTTTAAGATCAGAGAGTTACCCCTTCGAGG : 3174369 157 : aTrpLeu-ProTyrAspTyrSerLeuProIle<->LeuPheTyrIleThrTyrIle : 173 !||||||#|||!:!||||||!!! ! !!:!: :!!||| !:!!|||||| ! yTrpLeu#ProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAla 3174370 : ATGGTTAACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCT : 3174424 174 : HisGlnLeuIleGlyPheIleMetGlySerIleLeuHisLeuAlaCysAspGlyLe : 192 :!!|||!!!:!! !.!.|||.!. !!!! ! ! !:!!!.!! !|||..!|| TyrGlnPheValThrLeuIlePheLeuThrSerAlaIleIleGlySerAspAsnLe 3174425 : TATCAGTTTGTAACTCTGATATTCCTTACTTCTGCTATTATCGGTTCTGACAATCT : 3174481 193 : uIlePheGlyLeuLeuValHisIleTyrGlyGlnIleGluIleLeuGluSerArgL : 211 |.!! !|||||||||:!!||||||||| !!|||.!!|||||||||:!! !|||| uPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgL 3174482 : ATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTC : 3174538 212 : euArgArgIleThrHisGluProAspIle<->LeuArgGluCysIleLeuGlnHis : 228 ||!:!!!!|||! !! !!!: !!!: ! !!:!:!!||| !!!!!!.||| euLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHis 3174539 : TGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCAT : 3174592 229 : AsnArgIleLeuLysPhe : 234 !!||||||! !|||||| TyrArgIleTyrLysPhe 3174593 : TATCGCATATACAAGTTT : 3174612 vulgar: CbirOr187 137 234 . KQ414646.1 3174314 3174612 + 133 M 21 63 F 0 1 M 8 24 G 0 3 M 54 162 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174315 3174612 133 + . gene_id 12 ; sequence CbirOr187 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174315 3174612 . + . KQ414646.1 exonerate:protein2genome:local exon 3174315 3174612 . + . insertions 6 ; deletions 0 ; frameshifts 1 KQ414646.1 exonerate:protein2genome:local similarity 3174315 3174612 133 + . alignment_id 12 ; Query CbirOr187 ; Align 3174315 138 63 ; Align 3174379 159 24 ; Align 3174406 167 162 ; Align 3174571 221 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr186PC Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 642 Query range: 0 -> 298 Target range: 3149023 -> 3150808 1 : MetArgIleLeuGlyPheThrPheLysIleLeuMetSerCysGlyCysTrpIlePr : 19 ||| !|||||| !! .!!|||!!.||||||! !! !||||||||||||! || MetAlaIleLeuArgProAlaPheAsnIleLeuThrIleCysGlyCysTrpArgPr 3149024 : ATGGCTATCTTACGGCCAGCTTTCAACATACTGACGATCTGCGGATGCTGGAGGCC : 3149078 20 : oAsnSerTrpArgSerProHisArgArgLeuMetTyrHisValTyrThrIlePheI : 38 | !|||!! |||!!! !!!.! !!:! ! !||| !|||||||||!!:|||: oCysSerCysArgThrThrArgAlaLysAlaAlaTyrIleValTyrThrMetPheV 3149079 : GTGCTCGTGCCGAACGACACGCGCCAAGGCCGCGTACATCGTTTACACGATGTTCG : 3149135 39 : leLeuMetLeuIleAsnThrPheThrLeuSerGlnPheLeuAspIleIleLeuThr : 56 !::!!:!:|||:!::!!!:!||| !:!:|||||||||...::::::||||||!.! alValLeuLeuLeuHisSerPheCysIleSerGlnPhePheAsnValIleLeuAsn 3149136 : TGGTACTTTTATTGCACAGCTTCTGCATctcgcaatttttcaacgtgatACTGAAC : 3149189 57 : ValAspAsnAlaAspAspPheThrAspAsnPheTyrMetMetLeuAlaMetIleVa : 75 :!! !..||||||!!:.!.!:!!!:!:!|||||||||.!.:!!||| :!!:! LeuArgThrAlaAspGluLeuSerGluSerPheTyrMetPheIleAlaSerValLe 3149190 : TTGAGAACGGCGGACGAGCTGAGCGAGAGTTTCTACATGTTCATCGCGTCCGTTCT : 3149246 76 : lSerCysPheLysMetPheSerLeuLeuIleAsnArgGlyAsnIleAlaMetLeuT : 94 !||||||! !|||!!: !!!!!||||||! |||!.!|||!:!|||! !!!:||| uSerCysCysLysIleValThrLeuLeuThrAsnHisGlySerIleGluIleLeuA 3149247 : GTCCTGCTGCAAGATCGTCACGCTGCTGACGAACCACGGAAGCATCGAGATCCTCC : 3149303 95 : hrAspIleLeuMetLysGlyProCysLysProLeuGluGlnGluGluIleGluIle : 112 ! ! !||| !:!!! !||||||||||||:!!... |||||| !! ||| rgArgArgLeuGluGluGluProCysLysProValSerAlaGluGluAlaValIle 3149304 : GGAGGAGACTGGAGGAGGAGCCGTGTAAACCTGTGAGCGCCGAGGAGGCTGTCATA : 3149357 113 : ArgGlnLysPheAspLysLeuIle{Gl} >>>> Target Intron 1 >>>> : 121 !:!...|||||||||!:! !|||{! } 649 bp GlnSerLysPheAspArgAsnIle{Gl}++ + 3149358 : CAGAGTAAATTCGACAGAAACATC{GG}gt.........................a : 3150033 122 : {u}ThrAsnThrLeuHisTyrMetIleLeuValGluLeuThrCysAlaSerThrA : 139 {!}:!! |||:!!:!!|||! !|||||||||||||||||| ! !!!!! ! +{y}SerValThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCysMetI 3150034 : g{G}TCGGTGACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTGTATGA : 3150087 140 : laValAlaSerLeuPheThrAspTyrArgLysThrGlnLeuThrPheArgAlaTrp : 157 !:!!:!!||||||.!! !|||!:!!.!:!! !:!!|||.!!!:!||||||||| leLeuSerSerLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgAlaTrp 3150088 : TCCTCTCTTCGTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAGCCTGG : 3150141 158 : LeuProPheAsnTyrSerSerThrMetLeuTyrHisPheThrTyrPheHisGlnLe : 176 |||||||||:!!|||||| ! !!! ! !|||:!!.!!.!!||| !!||||||:! LeuProPheAspTyrSerLeuProThrTyrTyrTyrIleAlaTyrValHisGlnIl 3150142 : CTGCCCTTCGATTACTCTCTGCCAACTTACTATTACATCGCGTACGTTCATCAGAT : 3150198 177 : uIleSerLeuThrValGlySerValLeuHisValAlaCysAspGlyLeuIleCysG : 195 !:!!:!!|||! !! ! !|||:!!! !:!!||||||||||||! !:!!||||||| eValAlaLeuIleGlyThrSerLeuSerAsnValAlaCysAspValIleIleCysG 3150199 : CGTCGCGCTGATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCATCTGCG : 3150255 196 : lyLeuLeuLeuHisIleCysCysGlnMetGluIleLeuSerTyrArgLeuLysLys : 213 ||||||||:!!||| !||| !!|||..!|||||||||!.!:!!|||:!!|||:!! lyLeuLeuValHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMetLysGlu 3150256 : GGTTGCTCGTTCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATGAAGGAG : 3150309 214 : IleValCysSerProGlu<->ArgIleArgAspCysValIleGlnHisAsnLeuIl : 231 !!:..! ..!! !..! !.!||| !! ! !||| ! |||:!!! !:! MetThrGlnGluGlnArgProAsnIleGlyLysIleValArgPheHisAspTyrLe 3150310 : ATGACGCAGGAACAGAGGCCGAATATCGGGAAAATCGTTCGTTTCCACGATTATCT : 3150366 232 : ePhe{Ly} >>>> Target Intron 2 >>>> {s}PheAlaPheMetLeuA : 239 !!:!{ } 230 bp {!}!:!!.!|||! !:!!. uTyr{Gl}++ ++{y}TyrValPheThrMetG 3150367 : TTAC{GG}gt.........................ag{G}TACGTTTTCACGATGC : 3150620 240 : snLysLysPheArgPheThrIleThrPheGlnPheLeuValSerThrLeuValVal : 257 !.:!!|||||||||!::! !||| ! ! |||.!!||| !||||||||||||||| lnGluLysPheArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuValVal 3150621 : AAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGGTAGTG : 3150674 258 : CysPheThrLeuTyrGlnLeuThrLysThr<-><-><->SerGlyLysPheValGl : 273 ||||||! !||||||:!!|||.!!!!.||| |||..!|||!:!:!!:! CysPheIleLeuTyrGluLeuAlaAsnThrProProIleSerSerLysTyrLeuGl 3150675 : TGTTTCATCCTGTACGAATTGGCGAACACGCCTCCAATCAGCTCCAAGTACCTGCA : 3150731 274 : uIleGlyLeuTyrMetSerCysMetLeuThrGlnIlePheLeuTyrCysTrpTyrG : 292 !.!!! !||||||:!!:!!||||||:!!||||||||||||!!!||||||||||||| nPheValLeuTyrLeuAlaCysMetMetThrGlnIlePhePheTyrCysTrpTyrG 3150732 : ATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATCTTCTTTTACTGCTGGTACG : 3150788 293 : lyAsnGluValLysLeuLys : 298 ||.!.:!!:!!||||||||| lyGluGlnLeuLysLeuLys 3150789 : GCGAGCAGTTGAAACTGAAG : 3150808 vulgar: CbirOr186PC 0 298 . KQ414646.1 3149023 3150808 + 642 M 120 360 S 0 2 5 0 2 I 0 645 3 0 2 S 1 1 M 98 294 G 0 3 M 13 39 S 0 2 5 0 2 I 0 226 3 0 2 S 1 1 M 34 102 G 0 9 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3149024 3150808 642 + . gene_id 1 ; sequence CbirOr186PC ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3149024 3149385 . + . KQ414646.1 exonerate:protein2genome:local exon 3149024 3149385 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3149386 3149387 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3149386 3150034 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150033 3150034 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150035 3150373 . + . KQ414646.1 exonerate:protein2genome:local exon 3150035 3150373 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150374 3150375 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150374 3150603 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3150602 3150603 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150604 3150808 . + . KQ414646.1 exonerate:protein2genome:local exon 3150604 3150808 . + . insertions 9 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3149024 3150808 642 + . alignment_id 1 ; Query CbirOr186PC ; Align 3149024 1 360 ; Align 3150036 122 294 ; Align 3150333 220 39 ; Align 3150605 234 102 ; Align 3150716 268 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr186PC Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 606 Query range: 0 -> 298 Target range: 3163849 -> 3165184 1 : MetArgIleLeuGlyPheThrPheLysIleLeuMetSerCysGlyCysTrpIlePr : 19 |||!!!:!!||| !! !|||! :!:|||! ! !! !||||||!:::!:|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 3163850 : ATGAGTGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTACCTGCC : 3163904 20 : oAsnSerTrpArgSerProHisArgArgLeuMetTyrHisValTyrThrIlePheI : 38 |:!!||||||! !!!!||| !..!|||! !:!!|||:!!:!!||| !:!:||| oHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheT 3163905 : CCATTCGTGGACAACGCCGTTCGAAAGGTCTTTGTACAATATCTACGGGGTGTTCT : 3163961 39 : leLeuMetLeuIleAsnThrPheThrLeuSerGlnPheLeuAspIleIleLeuThr : 56 !|||:!:|||:!!!:!!:!.!!.!!|||||||||.!.||||||:!! :!!!.! yrLeuLeuLeuLeuSerSerLeuAlaLeuSerGlnIleLeuAspValAlaIleAsn 3163962 : ACTTGCTTCTTCTAAGCAGCCTCGCCCTCTCGCAAATATTAGACGTAGCGATCAAC : 3164015 57 : ValAspAsnAlaAspAspPheThrAspAsnPheTyrMetMetLeuAlaMetIleVa : 75 |||!!:!:! !|||||||||:::||||||||| ::: !!.!:!!.!!:! ValGluSerGlnAspAspPheSerAspAsnPheSerIleThrAlaValValPheLe 3164016 : GTGGAGAGCCAGGATGACTTCagtgacaatttttctatcaccGCTGTGGTGTTTCT : 3164072 76 : lSerCysPheLysMetPheSerLeuLeuIleAsnArgGlyAsnIleAlaMetLeuT : 94 !!!!!! ||||||:!:! !! !|||||||||...|||||||||.!! !.!.|||! uThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuI 3164073 : CACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGA : 3164129 95 : hrAspIleLeuMetLysGlyProCysLysProLeuGluGlnGluGluIleGluIle : 112 !|||! |||..!!!. !|||! !..!|||:!!!!: !||||||! !|||||| leAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIle 3164130 : TCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATT : 3164183 113 : ArgGlnLysPheAspLysLeuIle{Gl} >>>> Target Intron 1 >>>> : 121 ||| !||||||!!:|||:!!! !{||} 107 bp ArgAlaLysPheGluLysIleThr{Gl}++ + 3164184 : AGAGCGAAATTCGAGAAGATCACC{GA}gt.........................a : 3164317 122 : {u}ThrAsnThrLeuHisTyrMetIleLeuValGluLeuThrCysAlaSerThrA : 139 {|} !||||||:!! !||| !! !|||:!! !:!! !... !!!!! ! +{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleCysAlaPheTrpIleT 3164318 : g{A}TGGAACACGATTGGCTACTGGAGTTTACTATTAATTTGTGCGTTCTGGATAT : 3164371 140 : laValAlaSerLeuPheThrAspTyrArgLysThrGlnLeuThrPheArgAlaTrp : 157 !||| !||||||!!.||||||!:!!!!!..! !:!!|||! !|||||||||||| yrValArgSerLeuLeuThrAspPheSerSerArgLysLeuMetPheArgAlaTrp 3164372 : ACGTGAGATCGCTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGCATGG : 3164425 158 : LeuProPheAsnTyrSerSerThrMetLeuTyrHisPheThrTyrPheHisGlnLe : 176 ||||||!:!:!!|||||| !!.!! :!!!:! !.!!|||!:! !!|||||| LeuProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAl 3164426 : TTACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGC : 3164482 177 : uIleSerLeuThrValGlySerValLeuHisValAlaCysAspGlyLeuIleCysG : 195 !|||:!! !|||:!! !!!!!..!! ! !|||.!! |||..!||| ! !| aIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrG 3164483 : TATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTG : 3164539 196 : lyLeuLeuLeuHisIleCysCysGlnMetGluIleLeuSerTyrArgLeuLysLys : 213 ||||||||:!!:!!|||! !||||||.!.|||||||||..!:!!||||||!:!!!. lyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsn 3164540 : GCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAAC : 3164593 214 : IleValCys<->SerProGluArgIleArgAspCysValIleGlnHisAsnLeuIl : 231 :!! ! ! ..! !!!: !:!:!:!.!.|||!.! !!!.|||:!!! !|| ValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIl 3164594 : GTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTAT : 3164650 232 : ePhe{Ly} >>>> Target Intron 2 >>>> {s}PheAlaPheMetLeuA : 239 |!:!{:!} 325 bp {!}|||:!! ! !:!!| eTyr{Gl}++ ++{n}PheSerLysLysValA 3164651 : ATAC{CA}gt.........................ag{A}TTTTCGAAAAAGGTGA : 3164999 240 : snLysLysPheArgPheThrIleThrPheGlnPheLeuValSerThrLeuValVal : 257 ||:!!:!!|||!:!.!.! !:!:! !! !||||||! !:!!|||! !! !|||:!! snGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIle 3165000 : ACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATC : 3165053 258 : CysPheThrLeuTyrGlnLeuThr<-><->LysThrSerGlyLysPheValGluIl : 274 ||||||!.!||||||!:!:!!||| |||! !... |||||||||||||| CysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIl 3165054 : TGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaat : 3165110 275 : eGlyLeuTyrMetSerCysMetLeuThrGlnIlePheLeuTyrCysTrpTyrGlyA : 293 | !|||||| ! !|||! :!!||||||||||||! !|||||||||||||||| eIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyA 3165111 : caTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGGCA : 3165167 294 : snGluValLysLeuLys : 298 |||||||||||! !||| snGluValLysHisLys 3165168 : ACGAAGTGAAACATAAG : 3165184 vulgar: CbirOr186PC 0 298 . KQ414646.1 3163849 3165184 + 606 M 120 360 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 95 285 G 0 3 M 16 48 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 32 96 G 0 6 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3163850 3165184 606 + . gene_id 2 ; sequence CbirOr186PC ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3163850 3164211 . + . KQ414646.1 exonerate:protein2genome:local exon 3163850 3164211 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164212 3164213 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164212 3164318 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3164317 3164318 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164319 3164657 . + . KQ414646.1 exonerate:protein2genome:local exon 3164319 3164657 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164658 3164659 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164658 3164982 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3164981 3164982 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164983 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164983 3165184 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3163850 3165184 606 + . alignment_id 2 ; Query CbirOr186PC ; Align 3163850 1 360 ; Align 3164320 122 285 ; Align 3164608 217 48 ; Align 3164984 234 96 ; Align 3165086 266 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr186PC Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 585 Query range: 0 -> 298 Target range: 3157321 -> 3158656 1 : MetArgIleLeuGlyPheThrPheLysIleLeuMetSerCysGlyCysTrpIlePr : 19 |||!!!:!!||| !! !|||! :!:|||! ! !! !||||||!:::!:|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 3157322 : ATGAGCGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTATCTGCC : 3157376 20 : oAsnSerTrpArgSerProHisArgArgLeuMetTyrHisValTyrThrIlePheI : 38 |:!!||||||! !!!!||| !..!|||! !:!!|||:!!:!!||| !:::||| oHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheS 3157377 : CCATTCGTGGACAACACCGTTCGAAAGGTCTTTGTACAATATCTACGGGGtgttct : 3157433 39 : leLeuMetLeuIleAsnThrPheThrLeuSerGlnPheLeuAspIleIleLeuThr : 56 ...:::|||:::::!!:!.!!..!|||||||||.!.||||||:!! :!!!.! erPheLeuLeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIleAsn 3157434 : cctttcttcttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCAAC : 3157487 57 : ValAspAsnAlaAspAspPheThrAspAsnPheTyrMetMetLeuAlaMetIleVa : 75 |||!!:!:! !|||||||||!::||||||||| ::: !!.!:!!.!!:! ValGluSerGlnAspAspPheSerAspAsnPheSerValThrAlaValValPheLe 3157488 : GTGGAGAGCCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTTCT : 3157544 76 : lSerCysPheLysMetPheSerLeuLeuIleAsnArgGlyAsnIleAlaMetLeuT : 94 !!!!!! ||||||:!:! !! !|||||||||...|||||||||.!! !.!.|||! uThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuI 3157545 : CACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGA : 3157601 95 : hrAspIleLeuMetLysGlyProCysLysProLeuGluGlnGluGluIleGluIle : 112 !|||! |||..!!!. !|||! !..!|||:!!!!: !||||||! !|||||| leAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIle 3157602 : TCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATT : 3157655 113 : ArgGlnLysPheAspLysLeuIle{Gl} >>>> Target Intron 1 >>>> : 121 ||| !||||||!!:|||:!!! !{||} 107 bp ArgAlaLysPheGluLysIleThr{Gl}++ + 3157656 : AGAGCGAAATTCGAGAAGATCACC{GA}gt.........................a : 3157789 122 : {u}ThrAsnThrLeuHisTyrMetIleLeuValGluLeuThrCysAlaSerThrA : 139 {|} !||||||:!! !||| !! |||::: :::::: !! !! ! +{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleT 3157790 : g{A}TGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATAT : 3157843 140 : laValAlaSerLeuPheThrAspTyrArgLysThrGlnLeuThrPheArgAlaTrp : 157 !||| !||||||!!.! !|||!:!!!!!!.! !:!!|||! !|||||||||||| yrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrp 3157844 : ACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGG : 3157897 158 : LeuProPheAsnTyrSerSerThrMetLeuTyrHisPheThrTyrPheHisGlnLe : 176 :!!|||!:!:!!|||||| !!.!! :!!!:! !.!!|||! ! !!|||||| IleProTyrAspTyrSerProAlaProIlePheIleLeuThrSerValHisGlnAl 3157898 : ATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTCCGTCCATCAAGC : 3157954 177 : uIleSerLeuThrValGlySerValLeuHisValAlaCysAspGlyLeuIleCysG : 195 !|||:!!! !|||:!! !!!!!..!! ! !|||.!! ||| !||| ! !| aIleAlaSerThrIleCysCysThrSerThrValThrValAspThrLeuTyrThrG 3157955 : TATAGCCTCGACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTATACACTG : 3158011 196 : lyLeuLeuLeuHisIleCysCysGlnMetGluIleLeuSerTyrArgLeuLysLys : 213 ||||||||:!!:!!|||! !||||||.!.|||||||||..!:!!||||||!:!!!. lyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsn 3158012 : GCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAAC : 3158065 214 : IleValCys<->SerProGluArgIleArgAspCysValIleGlnHisAsnLeuIl : 231 :!! ! ! ..! !!!: !:!:!:!.!.|||!.! !!!.|||:!!! !|| ValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIl 3158066 : GTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTAT : 3158122 232 : ePhe{Ly} >>>> Target Intron 2 >>>> {s}PheAlaPheMetLeuA : 239 |!:!{:!} 325 bp {!}|||:!! ! !:!!| eTyr{Gl}++ ++{n}PheSerLysLysValA 3158123 : ATAC{CA}gt.........................ag{A}TTTTCGAAAAAGGTGA : 3158471 240 : snLysLysPheArgPheThrIleThrPheGlnPheLeuValSerThrLeuValVal : 257 ||:!!:!!|||!:!.!.! !:!:! !! !||||||! !:!!|||! !! !|||:!! snGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIle 3158472 : ACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATC : 3158525 258 : CysPheThrLeuTyrGlnLeuThr<-><->LysThrSerGlyLysPheValGluIl : 274 ||||||!.!||||||!:!:!!||| |||! !... |||||||||||||| CysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIl 3158526 : TGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaat : 3158582 275 : eGlyLeuTyrMetSerCysMetLeuThrGlnIlePheLeuTyrCysTrpTyrGlyA : 293 | !|||||| ! !|||! :!!||||||||||||! !|||||||||||||||| eIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyA 3158583 : caTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGTTGGTACGGCA : 3158639 294 : snGluValLysLeuLys : 298 ||||||||||| !||| snGluValLysAspLys 3158640 : ACGAAGTGAAAGATAAG : 3158656 vulgar: CbirOr186PC 0 298 . KQ414646.1 3157321 3158656 + 585 M 120 360 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 95 285 G 0 3 M 16 48 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 32 96 G 0 6 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157322 3158656 585 + . gene_id 3 ; sequence CbirOr186PC ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3157322 3157683 . + . KQ414646.1 exonerate:protein2genome:local exon 3157322 3157683 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3157684 3157685 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3157684 3157790 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3157789 3157790 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3157791 3158129 . + . KQ414646.1 exonerate:protein2genome:local exon 3157791 3158129 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158130 3158131 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158130 3158454 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3158453 3158454 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158455 3158656 . + . KQ414646.1 exonerate:protein2genome:local exon 3158455 3158656 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157322 3158656 585 + . alignment_id 3 ; Query CbirOr186PC ; Align 3157322 1 360 ; Align 3157792 122 285 ; Align 3158080 217 48 ; Align 3158456 234 96 ; Align 3158558 266 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr186PC Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 524 Query range: 0 -> 298 Target range: 3154921 -> 3156012 1 : MetArgIleLeuGlyPheThrPheLysIleLeuMetSerCysGlyCysTrpIlePr : 19 |||!.!:!!||| ! !.!.:!!.!!! ! ! !|||||| !||| !|| MetHisLeuLeuGlnLysGlnLeuGlnPheCysAlaMetCysGlyLeuTrpProPr 3154922 : ATGCATCTACTGCAAAAACAACTGCAATTTTGCGCAATGTGCGGTCTCTGGCCACC : 3154976 20 : oAsnSerTrpArgSerProHisArgArgLeuMetTyrHisValTyrThrIlePheI : 38 | |||! ! !!! ! !!:!|||!!! ||| !|||!:!:!! !:!! oProSerSerAlaProLeuPheLysArgPheAlaTyrSerValPheSerTrpTyrT 3154977 : GCCATCATCAGCTCCGCTGTTTAAAAGATTCGCCTACTCTGTATTCTCGTGGTACA : 3155033 39 : leLeuMetLeuIleAsnThrPheThrLeuSerGlnPheLeuAspIleIleLeuThr : 56 |||!!:|||:!: !!! ! ..!!!!||||||.!!:!!|||:!!|||:!!!.! hrLeuIleLeuValTyrIleThrValPheSerGlnIleMetAspLeuIleValAsn 3155034 : CGTTAATACTGGTGTACATCACGGTTTTCAGCCAAATCATGGACCTAATCGTGAAC : 3155087 57 : ValAspAsnAlaAspAspPheThrAspAsnPheTyrMetMetLeuAlaMetIleVa : 75 ||| !.! !|||!!:|||!:!||||||||||||!!::!:|||||| :! ValThrThrGlnAspGluPheSerAspAsnPheTyrIleLeuLeuAlaCysAlaIl 3155088 : GTGACGACTCAAGACGAGTTTAGCGACAATTTTTACATACTTCTGGCGTGTGCGAT : 3155144 76 : lSerCysPheLysMetPheSerLeuLeuIleAsnArgGlyAsnIleAlaMetLeuT : 94 !|||! ||| |||:!!|||! !!:!||| !|||:!! ! :!!! eSerLeuGlnLysAlaGlnSerValLeuAsnSerArgLysAsnValHisArgMetI 3155145 : ATCCTTGCAGAAAGCACAGAGTGTGTTAAACAGTCGTAAGAATGTCCACCGTATGA : 3155201 95 : hrAspIleLeuMetLysGlyProCysLysProLeuGluGlnGluGluIleGluIle : 112 !|||:!!|||! !..! !|||! ! ! ||| ! :!!||||||||||||||| leAspLeuLeuAsnSerGluProPheHisProGluCysLysGluGluIleGluIle 3155202 : TCGATCTTTTGAACAGCGAACCTTTTCATCCAGAATGTAAGGAGGAAATCGAGATA : 3155255 113 : ArgGlnLysPheAspLysLeuIle{Gl} >>>> Target Intron 1 >>>> : 121 |||...!:!.!!..!:!!! ! !{..} 119 bp ArgSerArgIleSerGluHisAla{Ar}++ + 3155256 : AGAAGTAGGATCTCCGAGCACGCC{AG}gt.........................a : 3155401 122 : {u}ThrAsnThrLeuHisTyrMetIleLeuValGluLeuThrCysAlaSerThrA : 139 {!}! !!:!:!! !:!!||| !||||||||||||! !||| !!!! !: +{g}ArgSerSerThrTyrTyrAlaIleLeuValGluSerThrValMetThrLeuS 3155402 : g{A}AGAAGCTCAACCTATTACGCGATTCTGGTCGAATCGACGGTGATGACTTTGT : 3155455 140 : laValAlaSerLeuPheThrAspTyrArgLysThrGlnLeuThrPheArgAlaTrp : 157 !! !!!.!:!!|||!!.! ! ..!..! !! ||| !!!:!||| !||| erPheGlyAlaLeuLeuLysPro---GluSerArgProLeuProTyrArgIleTrp 3155456 : CTTTCGGTGCACTGTTGAAACCA---GAATCACGTCCTTTACCGTATCGAATTTGG : 3155506 158 : LeuProPheAsnTyrSerSerThrMetLeuTyrHisPheThrTyrPheHisGlnLe : 176 ||||||! !||||||!!! !! !!!: !||| !! ! !||| !! !|||! LeuProCysAsnTyrThrProLeuIleThrTyrCysSerIleTyrThrLeuGlnCy 3155507 : CTACCTTGCAATTACACCCCGTTAATTACTTACTGTTCGATTTACACTCTCCAATG : 3155563 177 : uIleSerLeuThrValGlySerValLeuHisValAlaCysAspGlyLeuIleCysG : 195 !:!::!!|||.!!:!!.!!:!!:!!:!!|||||||||||||||.!!|||||||||| sValAlaLeuAlaLeuSerAlaMetMetHisValAlaCysAspSerLeuIleCysG 3155564 : TGTGGCACTCGCTCTAAGCGCTATGATGCACGTCGCCTGCGACAGTTTGATCTGCG : 3155620 196 : lyLeuLeuLeuHisIleCysCysGlnMetGluIleLeuSerTyrArgLeuLysLys : 213 ||||||||||||||! !! ! !!|||!!:|||||||||.!!! !||||||||| lyLeuLeuLeuHisThrTyrGlyGlnIleGluIleLeuGlyCysArgLeuLysThr 3155621 : GCCTGCTGTTACACACTTACGGCCAGATCGAGATCCTCGGTTGTCGTCTGAaaacg : 3155674 214 : IleValCysSerProGluArgIle<->ArgAspCysValIleGlnHisAsnLeuIl : 231 ||| ::: ...!:!! !:! |||||| ! ! :!!|||||||| IleLysGluAsnGluSerLysThrSerLysLeuCysValArgTyrAsnAsnLeuIl 3155675 : ataaaagaaaacgagagtAAGACGTCCAAGTTGTGCGTTCGTTACAACAACCTTAT : 3155731 232 : ePhe{Ly} >>>> Target Intron 2 >>>> {s}PheAlaPheMetLeuA : 239 |!:!{::} 69 bp {!}|||.!! !|||:!!| eTyr{Ar}++ ++{g}PheThrAlaMetIleA 3155732 : CTAT{CG}gt.........................ag{A}TTCACCGCTATGATAA : 3155824 240 : snLysLysPheArgPheThrIleThrPheGlnPheLeuValSerThrLeuValVal : 257 ||:!!:!!|||..!.!..!!||| ! !|||||| !||||||||||||!.!:!! snGluGlnPheGluMetAlaIlePheThrGlnPheAlaValSerThrLeuAlaIle 3155825 : ACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGTGAGTACGCTGGCGATA : 3155878 258 : CysPheThrLeuTyrGlnLeuThr<-><-><->LysThrSerGlyLysPheValGl : 273 ||||||!.!||||||! !|||||| !||| !! !!:!!:!||||| CysPheAsnLeuTyrLeuLeuThrGlySerAspValThrProIleArgTyrValGl 3155879 : TGCTTCAATCTTTACCTATTAACAGGATCAGATGTGACGCCGATTAGGTATGTGGA : 3155935 274 : uIleGlyLeuTyrMetSerCysMetLeuThrGlnIlePheLeuTyrCysTrpTyrG : 292 |||| !:!!|||! ||||||||||||||||||||||||:!!||||||||||||| uIleIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysTrpTyrG 3155936 : AATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTGGTACG : 3155992 293 : lyAsnGluValLysLeuLys : 298 |||||||||||||||||||| lyAsnGluValLysLeuLys 3155993 : GGAACGAAGTTAAGCTGAAG : 3156012 vulgar: CbirOr186PC 0 298 . KQ414646.1 3154921 3156012 + 524 M 120 360 S 0 2 5 0 2 I 0 115 3 0 2 S 1 1 M 25 75 G 1 0 M 74 222 G 0 3 M 11 33 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 32 96 G 0 9 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3154922 3156012 524 + . gene_id 4 ; sequence CbirOr186PC ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3154922 3155283 . + . KQ414646.1 exonerate:protein2genome:local exon 3154922 3155283 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3155284 3155285 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3155284 3155402 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3155401 3155402 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3155403 3155738 . + . KQ414646.1 exonerate:protein2genome:local exon 3155403 3155738 . + . insertions 3 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3155739 3155740 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3155739 3155807 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3155806 3155807 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3155808 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155808 3156012 . + . insertions 9 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3154922 3156012 524 + . alignment_id 4 ; Query CbirOr186PC ; Align 3154922 1 360 ; Align 3155404 122 75 ; Align 3155479 148 222 ; Align 3155704 222 33 ; Align 3155809 234 96 ; Align 3155914 266 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr186PC Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 197 Query range: 122 -> 294 Target range: 3153117 -> 3153645 123 : AsnThrLeuHisTyrMetIleLeuValGluLeuThrCysAlaSerThrAlaValAl : 141 |||.!! ! !|||! !!!!:!!!!::!! ! !.! ! ! !:!!.! AsnAlaLysAlaTyrThrTyrPheLeuAspIleLeuValValValLeuTrpIleTh 3153118 : AACGCTAAGGCTTACACATATTTCCTGGACATCTTGGTAGTCGTTTTATGGATAAC : 3153172 142 : aSerLeuPheThrAspTyrArgLysThrGlnLeuThrPheArgAlaTrpLeuProP : 160 !|||! !|||||||||||||||::: :::... ||||||..!|||||||||! rSerTyrPheThrAspTyrArgArgArgLysPheLysPheArgValTrpLeuProT 3153173 : ATCGTACTTCACGGACTACAGGcgcagaaaattcaaatttcgcgtCTGGTTACCTT : 3153229 161 : heAsnTyrSerSerThrMetLeuTyrHisPheThrTyrPheHisGlnLeuIleSer : 178 :!:!! !!!!!!! ! :!!!:! !.!.! !|||! !!!.|||:!!:!!!!! yrAspThrThrThrGlnProValPheThrLeuIleTyrCysGlnGlnIleValCys 3153230 : ACGACACTACTACACAACCTGTCTTCACTCTGATCTACTGTCAACAGATCGTCTGC : 3153283 179 : LeuThrValGlySerValLeuHisValAlaCysAspGlyLeuIleCysGlyLeuLe : 197 ! ! !.!! ! !:!!:!!||| !|||||| !!|||.!! !!||||||:! ThrTrpTyrSerValAsnIleAsnValIleCysAspCysLeuPheSerGlyLeuMe 3153284 : ACGTGGTACAGCGTGAATATTAACGTCATTTGCGACTGCCTGTTCAGCGGCCTGAT : 3153340 198 : uLeuHisIleCysCysGlnMet<->GluIleLeuSerTyrArgLeuLysLysIleV : 215 !:!!!!.||||||! :!: :!!!!: ! !! !|||! !!!. :!:: tIleGlnIleCysSerIleLeuArgLysMetLysProThrArgArgAsnCysValL 3153341 : GATACAGATTTGCTCAATCTTACGGAAGATGAAACCTACTCGGCGAAACTGTGTGC : 3153397 216 : alCysSerProGluArgIleArgAspCysValIleGlnHisAsnLeuIlePheLys : 233 !! !!!! ! ||| !! !..! ! |||... ::: euValThrIleIleArgTyrThrSerGlnSerArgGlnGluIleLysArgTyrVal 3153398 : TCGTCACCATAATCAGATATACAAGCCAGTCTCGacaagaaattaaacgatacgTT : 3153451 234 : <->PheAlaPheMetLeuAsnLysLysPheArgPheThrIleThrPheGlnPheLe : 251 !!.||| !!::!!|||:!!|||.!! !! !..! !:!.!.|||||| ***LeuAlaGlnIleValAsnGluLysLeuGlyAsnValSerSerIleGlnPheAl 3153452 : TGATTGGCGCAAATAGTGAACGAGAAGCTTGGAAATGTCTCGAGTATACAGTTCGC : 3153508 252 : uValSerThrLeuValValCysPheThrLeuTyrGlnLeuThr<-><->LysThrS : 268 !:!!|||||| !!.!:!!||||||!.!||||||!:!:!!:!! :!! !. aIleSerThrGlyAlaIleCysPheAsnLeuTyrArgMetSerValIleGluLeuG 3153509 : GATAAGCACAGGAGCGATATGCTTCAATCTCTATCGAATGTCGGTGATAGAACTCG : 3153565 269 : erGlyLysPheValGluIleGlyLeuTyrMetSerCysMetLeuThrGlnIlePhe : 286 !! !|||||||||||| ! ! !! !|||:!:|||.!!||||||||| lyProLysPheValGluAlaLeuThrIleThrValCysLeuLeuAlaGlnIlePhe 3153566 : GTCCAAAGTTTGTGGAAGCGTTAACTATCACAGTATGCTTACTCGCGCAGATATTT : 3153619 287 : LeuTyrCysTrpTyrGlyAsnGlu : 294 ! !||||||||||||||||||::: TyrTyrCysTrpTyrGlyAsnAsp 3153620 : TACTATTGTTGGTAcggtaacgat : 3153645 vulgar: CbirOr186PC 122 294 . KQ414646.1 3153117 3153645 + 197 M 82 246 G 0 3 M 29 87 G 0 3 M 32 96 G 0 6 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153118 3153645 197 + . gene_id 5 ; sequence CbirOr186PC ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153118 3153645 . + . KQ414646.1 exonerate:protein2genome:local exon 3153118 3153645 . + . insertions 12 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153118 3153645 197 + . alignment_id 5 ; Query CbirOr186PC ; Align 3153118 123 246 ; Align 3153367 205 87 ; Align 3153457 234 96 ; Align 3153559 266 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr186PC Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 123 -> 236 Target range: 3160062 -> 3160407 124 : ThrLeuHisTyrMetIleLeuValGluLeuThrCysAlaSerThrAlaValAlaSe : 142 :!!:!! !|||! !:!!! !..!! !|||!:!....!!.!!..! !:!! !|| SerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValTrpMetLeuSe 3160063 : TCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTATGGATGTTGTC : 3160117 143 : rLeuPheThrAspTyrArgLysThrGlnLeuThrPheArgAlaTrpLeuProPheA : 161 | !.!.|||! !:!|||! ! !:!!||| !!.!!|||!.!||||||||||||: rAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrpLeuProPheA 3160118 : GGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGGTTACCTTTCG : 3160174 162 : snTyrSerSerThrMet<->LeuTyrHisPheThrTyrPheHisGlnLeuIleSer : 178 !!|||!!!:!!|||:!! :!!!:! !.!!|||||| !:!!|||!!!:!!!!! spTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGlnPheValThr 3160175 : ATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAGTTTGTAACT : 3160228 179 : LeuThrValGlySerValLeuHisValAlaCysAspGlyLeuIleCysGlyLeuLe : 197 |||! ! !! !!!!..! ! !:!!!.! !|||..!|||.!! !!|||||||| LeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheSerGlyLeuLe 3160229 : CTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCAGCGGACTGTT : 3160285 198 : uLeuHisIleCysCysGlnMetGluIleLeuSerTyrArgLeuLysLysIleValC : 216 |:!!||||||! !||||||.!.|||||||||..!:!!|||||||||!..||| ! uIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysSerIleLysP 3160286 : GATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGAGCATTAAAC : 3160342 217 : ysSerProGlu<->ArgIleArgAspCysValIleGlnHisAsnLeuIlePheLys : 233 !..! !||| ! !:!.!.|||!.!.!!!!.||| !!! !|||!:!||| roAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrArgIleTyrLys 3160343 : CTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGCATATACAAG : 3160396 234 : PheAlaPhe : 236 |||...::: PheValTyr 3160397 : TTTgtctac : 3160407 vulgar: CbirOr186PC 123 236 . KQ414646.1 3160062 3160407 + 170 M 43 129 G 0 3 M 53 159 G 0 3 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160063 3160407 170 + . gene_id 6 ; sequence CbirOr186PC ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160063 3160407 . + . KQ414646.1 exonerate:protein2genome:local exon 3160063 3160407 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160063 3160407 170 + . alignment_id 6 ; Query CbirOr186PC ; Align 3160063 124 129 ; Align 3160195 167 159 ; Align 3160357 220 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr186PC Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 231 -> 298 Target range: 3160720 -> 3160927 232 : PheLysPheAlaPheMetLeuAsnLysLysPheArgPheThrIleThrPheGlnPh : 250 |||!:!|||||| !!::!!||| !||||||!!!.!!|||!!:.!! ||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3160721 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3160775 251 : eLeuValSerThrLeuValValCysPheThrLeuTyrGlnLeuThrLysThrSer< : 269 |||||||!!!|||:!!..!:!!||||||!.!|||!:!!:!||||||:!!|||!.! eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3160776 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3160832 270 : -><->GlyLysPheValGluIleGlyLeuTyrMetSerCysMetLeuThrGlnIle : 285 ..!:!! !!:!!! !:!: !! !!:!||| ! !!:!!!!!.!!|||||| alTyrSerGlnValLeuAlaLeuIleProPheMetValSerValPheAlaGlnIle 3160833 : TGTATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATA : 3160886 286 : PheLeuTyrCysTrpTyrGlyAsnGluValLysLeuLys : 298 |||! !! !||||||||||||||||||..!|||:!!||| PheTyrCysCysTrpTyrGlyAsnGluThrLysValLys 3160887 : TTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG : 3160927 vulgar: CbirOr186PC 231 298 . KQ414646.1 3160720 3160927 + 145 M 37 111 G 0 6 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160721 3160927 145 + . gene_id 7 ; sequence CbirOr186PC ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160721 3160927 . + . KQ414646.1 exonerate:protein2genome:local exon 3160721 3160927 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160721 3160927 145 + . alignment_id 7 ; Query CbirOr186PC ; Align 3160721 232 111 ; Align 3160838 269 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr186PC Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 231 -> 298 Target range: 3174931 -> 3175138 232 : PheLysPheAlaPheMetLeuAsnLysLysPheArgPheThrIleThrPheGlnPh : 250 |||!:!|||||| !!::!!||| !||||||!!!.!!|||!!:.!! ||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3174932 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3174986 251 : eLeuValSerThrLeuValValCysPheThrLeuTyrGlnLeuThrLysThrSer< : 269 |||||||!!!|||:!!..!:!!||||||!.!|||!:!!:!||||||:!!|||!.! eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3174987 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3175043 270 : -><->GlyLysPheValGluIleGlyLeuTyrMetSerCysMetLeuThrGlnIle : 285 ..!:!! !!:!!! !:!: !! !!:!||| ! !!:!!!!!.!!|||||| alTyrSerGlnValLeuAlaLeuIleProPheMetValSerValPheAlaGlnIle 3175044 : TGTATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATA : 3175097 286 : PheLeuTyrCysTrpTyrGlyAsnGluValLysLeuLys : 298 |||! !! !||||||||||||||||||..!|||:!!||| PheTyrCysCysTrpTyrGlyAsnGluThrLysValLys 3175098 : TTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG : 3175138 vulgar: CbirOr186PC 231 298 . KQ414646.1 3174931 3175138 + 145 M 37 111 G 0 6 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174932 3175138 145 + . gene_id 8 ; sequence CbirOr186PC ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174932 3175138 . + . KQ414646.1 exonerate:protein2genome:local exon 3174932 3175138 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3174932 3175138 145 + . alignment_id 8 ; Query CbirOr186PC ; Align 3174932 232 111 ; Align 3175049 269 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr186PC Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 228 -> 298 Target range: 3178372 -> 3178591 229 : AsnLeuIlePheLysPheAlaPheMetLeuAsnLysLysPheArgPheThrIleTh : 247 |||...||| :::|||.!! ! !:!!|||! !|||!:!!:!! !||| AsnPheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePh 3178373 : aatttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTT : 3178427 248 : rPheGlnPheLeuValSerThrLeuValValCysPheThrLeuTyrGlnLeuThrL : 266 !.!.||||||! !:!!|||:!! !|||:!!|||!!.!:!:!!|||:!!:!!:!!! eLeuGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerT 3178428 : CCTGCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGA : 3178484 267 : ysThr<-><-><->SerGlyLysPheValGluIleGlyLeuTyrMetSerCysMet : 281 !! ! ||| !!!.|||||| ! !!.!! !|||:!:!!!|||||| hrIleAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMet 3178485 : CGATTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATG : 3178538 282 : LeuThrGlnIlePheLeuTyrCysTrpTyrGlyAsnGluValLysLeuLys : 298 |||||||||:!:!:!||||||||||||!:!||||||||||||! !|||||| LeuThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys 3178539 : CTCACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: CbirOr186PC 228 298 . KQ414646.1 3178372 3178591 + 145 M 39 117 G 0 9 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178373 3178591 145 + . gene_id 9 ; sequence CbirOr186PC ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178373 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178373 3178591 . + . insertions 9 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178373 3178591 145 + . alignment_id 9 ; Query CbirOr186PC ; Align 3178373 229 117 ; Align 3178499 268 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr186PC Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 140 -> 236 Target range: 3174323 -> 3174618 141 : AlaSerLeuPheThrAspTyrArgLysThrGlnLeuThrPheArgAlaTrpLeu-P : 159 :!!|||:!!||||||! !!:!!:!! ! !:!!||| !!.!!|||!.!||||||#| SerSerIlePheThrAlaPheLysIleArgGluLeuProLeuArgGlyTrpLeu#P 3174324 : TCGTCGATCTTCACGGCTTTTAAGATCAGAGAGTTACCCCTTCGAGGATGGTTAAC : 3174379 160 : roPheAsnTyrSerSerThrMet<->LeuTyrHisPheThrTyrPheHisGlnLeu : 176 |||||:!!|||!!!:!!|||:!! :!!!:! !.!!|||||| !:!!|||!!! roPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGlnPhe 3174380 : CTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAGTTT : 3174433 177 : IleSerLeuThrValGlySerValLeuHisValAlaCysAspGlyLeuIleCysGl : 195 :!!!!!|||! ! !! !!!! ! ! !:!!!.!! !|||..!|||.!! !!|| ValThrLeuIlePheLeuThrSerAlaIleIleGlySerAspAsnLeuPheSerGl 3174434 : GTAACTCTGATATTCCTTACTTCTGCTATTATCGGTTCTGACAATCTATTCAGCGG : 3174490 196 : yLeuLeuLeuHisIleCysCysGlnMetGluIleLeuSerTyrArgLeuLysLysI : 214 |||||||:!!||||||! !||||||.!.|||||||||..!:!!|||||||||!..| yLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysSerI 3174491 : ACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGAGCA : 3174547 215 : leValCysSerProGlu<->ArgIleArgAspCysValIleGlnHisAsnLeuIle : 231 || ! !..! !||| ! !:!.!.|||!.!.!!!!.||| !!! !||| leLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrArgIle 3174548 : TTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGCATA : 3174601 232 : PheLysPheAlaPhe : 236 !:!||||||...::: TyrLysPheValTyr 3174602 : TACAAGTTTgtctac : 3174618 vulgar: CbirOr186PC 140 236 . KQ414646.1 3174323 3174618 + 140 M 18 54 F 0 1 M 8 24 G 0 3 M 53 159 G 0 3 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174324 3174618 140 + . gene_id 10 ; sequence CbirOr186PC ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174324 3174618 . + . KQ414646.1 exonerate:protein2genome:local exon 3174324 3174618 . + . insertions 6 ; deletions 0 ; frameshifts 1 KQ414646.1 exonerate:protein2genome:local similarity 3174324 3174618 140 + . alignment_id 10 ; Query CbirOr186PC ; Align 3174324 141 54 ; Align 3174379 159 24 ; Align 3174406 167 159 ; Align 3174568 220 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr186PC Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 232 -> 298 Target range: 3180460 -> 3180667 233 : LysPheAlaPheMetLeuAsnLysLysPheArgPheThrIleThrPheGlnPheLe : 251 !..!!.||| !!::!!||| ! !...!.!:!.!.|||!!: ! !||||||!! SerLeuAlaGluIleMetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePh 3180461 : AGTTTAGCTGAAATAATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTT : 3180515 252 : uValSerThrLeuValValCysPheThrLeuTyrGlnLeuThrLysThr<-><->< : 268 !! !||| !:!!|||:!!|||.!.!:!||| !|||||| !!!..!! eGlySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleL 3180516 : CGGAAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTC : 3180572 269 : ->SerGlyLysPheValGluIleGlyLeuTyrMetSerCysMetLeuThrGlnIle : 285 ||| !:!!|||:!!! !! ...|||:::||| :::||| !|||! ! euSerThrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSer 3180573 : TCAGCACCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGC : 3180626 286 : PheLeuTyrCysTrpTyrGlyAsnGluValLysLeuLys : 298 ||||||||||||||||||||||||||||||!:! !||| PheLeuTyrCysTrpTyrGlyAsnGluValArgThrLys 3180627 : TTTCTTTACTGTTGGTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: CbirOr186PC 232 298 . KQ414646.1 3180460 3180667 + 112 M 35 105 G 0 9 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180461 3180667 112 + . gene_id 11 ; sequence CbirOr186PC ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180461 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180461 3180667 . + . insertions 9 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180461 3180667 112 + . alignment_id 11 ; Query CbirOr186PC ; Align 3180461 233 105 ; Align 3180575 268 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr182 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 301 Query range: 0 -> 213 Target range: 3149023 -> 3150314 1 : MetGlnIleLeuSerLeuAsnPhePheIleTyrThrValGlyGlyValTrpArgPr : 19 ||| |||||| !!! ! !||| !||| |||:!! !!||| !|||||||| MetAlaIleLeuArgProAlaPheAsnIleLeuThrIleCysGlyCysTrpArgPr 3149024 : ATGGCTATCTTACGGCCAGCTTTCAACATACTGACGATCTGCGGATGCTGGAGGCC : 3149078 20 : oIleGluTrpSerSerThrGlyAlaLysLeuLeuTyrAsnValPheThrPheIleT : 38 | !..!!! !!!!!||| !!|||||| ! !|||! !|||!:!|||.!..!!. oCysSerCysArgThrThrArgAlaLysAlaAlaTyrIleValTyrThrMetPheV 3149079 : GTGCTCGTGCCGAACGACACGCGCCAAGGCCGCGTACATCGTTTACACGATGTTCG : 3149135 39 : hrIleValProLeuTyrPheLeuMetLeuThrGlnPheMetAspIleValLeuIle : 56 .!:!!:!! !|||:!! !!!! :!::::||||||...::::::::!|||! ! alValLeuLeuLeuHisSerPheCysIleSerGlnPhePheAsnValIleLeuAsn 3149136 : TGGTACTTTTATTGCACAGCTTCTGCATctcgcaatttttcaacgtgatACTGAAC : 3149189 57 : ValAspAsnLeuAspAspPheAlaThrAsnSerLeuMetPheMetThrIleValGl : 75 :!! !.. !|||!!:.!.::! !!:!! !! !||||||!!:.!! !||| LeuArgThrAlaAspGluLeuSerGluSerPheTyrMetPheIleAlaSerValLe 3149190 : TTGAGAACGGCGGACGAGCTGAGCGAGAGTTTCTACATGTTCATCGCGTCCGTTCT : 3149246 76 : yValCysCysLysAlaThrValAlaValValArgArgSerGluIleIleAspLeuV : 94 ! !||||||||| !..!..! !:!!..!!.!!.!.!!...||| !||| uSerCysCysLysIleValThrLeuLeuThrAsnHisGlySerIleGluIleLeuA 3149247 : GTCCTGCTGCAAGATCGTCACGCTGCTGACGAACCACGGAAGCATCGAGATCCTCC : 3149303 95 : alGlnIleLeuLeuLysAspProCysLysProArgAsnGluAlaGluLeuAlaIle : 112 !::!! !||| !:!!!!:|||||||||||| !!:!! ! !||| !!.!||| rgArgArgLeuGluGluGluProCysLysProValSerAlaGluGluAlaValIle 3149304 : GGAGGAGACTGGAGGAGGAGCCGTGTAAACCTGTGAGCGCCGAGGAGGCTGTCATA : 3149357 113 : GlnAlaLysPheAspGluPheIle{Ar} >>>> Target Intron 1 >>>> : 121 |||::!|||||||||..! !|||{ !} 649 bp GlnSerLysPheAspArgAsnIle{Gl}++ + 3149358 : CAGAGTAAATTCGACAGAAACATC{GG}gt.........................a : 3150033 122 : {g}SerSerSerIleLysTyrSerLeuLeuAlaThrGlySerIleThrSerPheT : 139 {!}||| !!!!||| ! |||!!!:!!|||!.! ! !!!!:!! !!!!.!.! +{y}SerValThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCysMetI 3150034 : g{G}TCGGTGACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTGTATGA : 3150087 140 : hrIleArgSerLeuLeu<->AsnValLeuGlnGlyHisLeuProTyrArgValTrp : 156 !:!! !||||||||| :!! !! !:!! !!.!.||| !!||||||!.!||| leLeuSerSerLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgAlaTrp 3150088 : TCCTCTCTTCGTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAGCCTGG : 3150141 157 : LeuProTyrAspSerAspGluSerLeuMetPheTrpIleThrSerIleHisGlnIl : 175 ||||||!:!|||! !..! ! !! ! !:!!::|||.!!! !:!!|||||||| LeuProPheAspTyrSerLeuProThrTyrTyrTyrIleAlaTyrValHisGlnIl 3150142 : CTGCCCTTCGATTACTCTCTGCCAACTTACTATTACATCGCGTACGTTCATCAGAT : 3150198 176 : eIleThrLeuIlePheAlaThrIleIleAsnValGlyThrGluThrLeuIlePheG : 194 |:!!.!!|||||| !.!!:!!:!! ||||||!.! !!!:..!:!!|||! !| eValAlaLeuIleGlyThrSerLeuSerAsnValAlaCysAspValIleIleCysG 3150199 : CGTCGCGCTGATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCATCTGCG : 3150255 195 : lyLeuPheLeuGlnThrCysValGlnLeuGluIlePheGluSerArgLeuHisLys : 212 |||||.!!:!!!!..!!|||! !|||! !||||||.!!:!! !|||:!! ! :!! lyLeuLeuValHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMetLysGlu 3150256 : GGTTGCTCGTTCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATGAAGGAG : 3150309 213 : Leu : 213 :!! Met 3150310 : ATG : 3150314 vulgar: CbirOr182 0 213 . KQ414646.1 3149023 3150314 + 301 M 120 360 S 0 2 5 0 2 I 0 645 3 0 2 S 1 1 M 23 69 G 0 3 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3149024 3150314 301 + . gene_id 1 ; sequence CbirOr182 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3149024 3149385 . + . KQ414646.1 exonerate:protein2genome:local exon 3149024 3149385 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3149386 3149387 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3149386 3150034 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150033 3150034 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150035 3150314 . + . KQ414646.1 exonerate:protein2genome:local exon 3150035 3150314 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3149024 3150314 301 + . alignment_id 1 ; Query CbirOr182 ; Align 3149024 1 360 ; Align 3150036 122 69 ; Align 3150108 145 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr182 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 270 Query range: 0 -> 213 Target range: 3159620 -> 3160338 1 : MetGlnIleLeuSerLeuAsnPhePheIleTyrThrValGlyGlyValTrpArgPr : 19 |||!!.! |||..!|||:::!!. ! !! |||:!! !!||| ! ||||| MetHisThrLeuGlnLeuSerLeuLysThrLeuThrIleCysGlyTyrIleArgPr 3159621 : ATGCACACGTTGCAATTGTCGTTGAAAACTTTGACGATTTGCGGCTACATAAGGCC : 3159675 20 : oIleGluTrpSerSerThrGlyAlaLysLeuLeuTyrAsnValPheThrPheIleT : 38 |! !..!|||!.!||| !!||| !|||||||||||||||||| !||| !!! !. oThrSerTrpLysSerProGlyLeuLysLeuLeuTyrAsnValHisThrValThrV 3159676 : AACATCGTGGAAGTCACCGGGGCTAAAGCTTCTCTATAACGTACACACGGTTACTG : 3159732 39 : hrIleValProLeuTyrPheLeuMetLeuThrGlnPheMetAspIleValLeuIle : 56 .!:!:||| !||| ! !!!.!.:!!.!!|||.!.:!:||||||:::... alValValValLeuSerThrPhePheValAlaGlnIleLeuAspIleIlePheAsn 3159733 : TAGTGGTAGTTCTTAGCACGTTTTTCGTCGCCCAGATATTggacattattttcaac : 3159786 57 : ValAspAsnLeuAspAspPheAlaThrAsnSerLeuMetPheMetThrIleValGl : 75 |||!!:|||! !|||!!:|||::! !|||! !! !!!: !:!::!!.. ValGluAsnGlnAspGluPheSerAspAsnPheCysIleThrCysCysValMetAs 3159787 : gtgGAGAATCAAGACGAGTTTAGCGACAATTTCTGCATAACGTGCTGCGTGATGAA : 3159843 76 : yValCysCysLysAlaThrValAlaValValArgArgSerGluIleIleAspLeuV : 94 ! ! ! ! ||| ! ! ! !:!!:!! !!|||..! !||| !:!!|||: nSerLeuGlyLysLeuTyrSerLeuLeuIleGlyArgGluMetIleGlnAsnLeuI 3159844 : CAGCCTTGGAAAGTTGTACAGCTTGCTGATAGGACGAGAAATGATCCAAAATTTAA : 3159900 95 : alGlnIleLeuLeuLysAspProCysLysProArgAsnGluAlaGluLeuAlaIle : 112 !!.!. |||! !!..|||||| !!:!||| !:!!|||!.!||| !! !||| leAspSerLeuGlnSerAspProLeuArgProLeuAspGluValGluAsnGluIle 3159901 : TAGACTCGCTACAAAGTGACCCTCTTAGGCCGTTGGACGAAGTGGAGAATGAAATT : 3159954 113 : GlnAlaLysPheAspGluPheIle{Ar} >>>> Target Intron 1 >>>> : 121 !:! !!:! !!!::!! |||{..} 73 bp ArgLeuArgHisGluLysThrIle{Gl}++ + 3159955 : CGATTGAGACACGAGAAGACAATC{GA}gt.........................a : 3160054 122 : {g}SerSerSerIleLysTyrSerLeuLeuAlaThrGlySerIleThrSerPheT : 139 {!}!.! !|||!!: |||!!!:!!! !.!!..! !||| |||.!! ! +{u}LysLeuSerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValT 3160055 : g{A}AAGCTCTCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTAT : 3160108 140 : hrIleArgSerLeuLeuAsnValLeuGln<->GlyHisLeuProTyrArgValTrp : 156 !!!: !||| !:!!!..!.!!!!::! !!.!.|||||| !||||||||| rpMetLeuSerAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrp 3160109 : GGATGTTGTCGGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGG : 3160162 157 : LeuProTyrAspSerAspGluSerLeu<->MetPheTrpIleThrSerIleHisGl : 174 ||||||!:!|||! ! ! !!!||| !!:||| ! :!!|||! ! !:!!|| LeuProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGl 3160163 : TTACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCA : 3160219 175 : nIleIleThrLeuIlePheAlaThrIleIleAsnValGlyThrGluThrLeuIleP : 193 |.!!:!!|||||||||||| !|||! ! ! !:!!||||||!!:!.!|||.!! nPheValThrLeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheS 3160220 : GTTTGTAACTCTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCA : 3160276 194 : heGlyLeuPheLeuGlnThrCysValGlnLeuGluIlePheGluSerArgLeuHis : 211 !||||||!!.:!!!!.! !! ! !|||!!!||||||.!!:!! !|||||| ! erGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLys 3160277 : GCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAG : 3160330 212 : LysLeu : 213 !..:!! SerIle 3160331 : AGCATT : 3160338 vulgar: CbirOr182 0 213 . KQ414646.1 3159620 3160338 + 270 M 120 360 S 0 2 5 0 2 I 0 69 3 0 2 S 1 1 M 27 81 G 0 3 M 17 51 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3159621 3160338 270 + . gene_id 2 ; sequence CbirOr182 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3159621 3159982 . + . KQ414646.1 exonerate:protein2genome:local exon 3159621 3159982 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3159983 3159984 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3159983 3160055 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3160054 3160055 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3160056 3160338 . + . KQ414646.1 exonerate:protein2genome:local exon 3160056 3160338 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3159621 3160338 270 + . alignment_id 2 ; Query CbirOr182 ; Align 3159621 1 360 ; Align 3160057 122 81 ; Align 3160141 149 51 ; Align 3160195 166 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr182 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 315 -> 373 Target range: 3178743 -> 3178917 316 : LysSerThrSerIleGlyAsnAlaIleTyrGluMetAsnTrpThrLeuLeuSerIl : 334 :!!||| !!.!:!!|||.!.|||||||||||||||:!!|||||| !||| !!! GlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuProTh 3178744 : CAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCCCAC : 3178798 335 : eSerGluLysArgAspLeuLeuMetIleMetLysArgSerAlaIleProIleLysP : 353 !..! !!:!!:!|||||||||:!!|||||| !|||||| ! !|||:!!|||. rAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValLysM 3178799 : CGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTAAAA : 3178855 354 : heThrSerSerPheLeuIleThrPheSerLeuGluAlaTyrSerSerIleLeuLys : 371 !.||||||.!! !:!!:!!..!!!.||| !|||:!!!:!! !|||:!! !!:! etThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerValSerArg 3178856 : TGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTTAGTAGA : 3178909 372 : ThrSer : 373 ! !||| IleSer 3178910 : ATTTCC : 3178917 vulgar: CbirOr182 315 373 . KQ414646.1 3178743 3178917 + 134 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178744 3178917 134 + . gene_id 3 ; sequence CbirOr182 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178744 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178744 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178744 3178917 134 + . alignment_id 3 ; Query CbirOr182 ; Align 3178744 316 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr182 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 316 -> 383 Target range: 3165264 -> 3165539 317 : SerThrSerIleGlyAsnAlaIleTyrGluMetAsnTrpThrLeuLeuSerIleSe : 335 ||| !..!:!! ! !! !|||!:!.!.! :!!||||||! !|||!:!! !!: SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAs 3165265 : AGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAA : 3165319 336 : rGluLysArgAspLeuLeuMetIleMetLysArgSerAlaIleProIleLysPheT : 354 !! ! |||! ||||||!!:!!:|||!:!|||:!!!.!! ||||||:!!|||| nValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheT 3165320 : CGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCA : 3165376 355 : hrSerSerPheLeuIleThrPheSerLeuGluAlaTyrSerSer >>>> Targe : 369 |||||! ! !:!!:!!:!! ! !:!||||||:!!!:!! !:!! hrSerIleHisValValSerValAsnLeuGluSerPheMetAla++ 3165377 : CCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt.......... : 3165423 370 : t Intron 1 >>>> IleLeuLysThrSerTyrSerAlaPheAsnValLeuGln : 381 74 bp :!!:!!||||||||||||||||||||||||:!!:!!||| ++ValIleLysThrSerTyrSerAlaPheAsnMetIleGln 3165424 : ...............agGTAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAA : 3165531 382 : GlnSer : 383 |||||| GlnSer 3165532 : CAAAGC : 3165539 vulgar: CbirOr182 316 383 . KQ414646.1 3165264 3165539 + 127 M 52 156 5 0 2 I 0 70 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3165265 3165539 127 + . gene_id 4 ; sequence CbirOr182 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3165265 3165420 . + . KQ414646.1 exonerate:protein2genome:local exon 3165265 3165420 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165421 3165422 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165421 3165494 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3165493 3165494 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165495 3165539 . + . KQ414646.1 exonerate:protein2genome:local exon 3165495 3165539 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3165265 3165539 127 + . alignment_id 4 ; Query CbirOr182 ; Align 3165265 317 156 ; Align 3165495 369 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr182 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 248 -> 328 Target range: 3155805 -> 3156048 249 : HisTyrAlaLysThrLeuAsnSerIlePheAsnGlnValLeuPhePheGlnPhePh : 267 ...!:!.!! ! !:!!|||..! !|||.!...!!.!:!!||| !|||||| ArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAl 3155806 : AGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGC : 3155860 268 : eGlySerIleLeuValLeuCysThrSerValTyrTyrMetSer<->ThrHisIleS : 285 ! !|||! |||!.!:!!||| !!:!:!!||| :!:!!! :!! !!:!:! aValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValT 3155861 : GGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGA : 3155917 286 : erGlySerGluAlaAlaThrLeuProAlaTyrThrValCysMetPheValGlnIle : 303 !! !! !..! !!.! !:!! ! !|||!:! !||||||.!!..!|||||| hrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIle 3155918 : CGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATA : 3155971 304 : PheValTyrCysTrpSerGlyAsnGluValIleLeuLysSerThrSerIleGlyAs : 322 |||:!!|||||||||! !||||||||||||! |||||| !:!!! !.!! !!:! PheIleTyrCysTrpTyrGlyAsnGluValLysLeuLysValSerTyrPheArgHi 3155972 : TTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAGGTTTCTTATTTTCGACA : 3156028 323 : nAlaIleTyrGluMetAsn : 328 !..! !||| !:!:||| sCysSerTyrLeuLeuAsn 3156029 : TTGTTCATATTTGCTAAAT : 3156048 vulgar: CbirOr182 248 328 . KQ414646.1 3155805 3156048 + 124 M 33 99 G 0 3 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155806 3156048 124 + . gene_id 5 ; sequence CbirOr182 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155806 3156048 . + . KQ414646.1 exonerate:protein2genome:local exon 3155806 3156048 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155806 3156048 124 + . alignment_id 5 ; Query CbirOr182 ; Align 3155806 249 99 ; Align 3155908 282 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr182 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 316 -> 383 Target range: 3158736 -> 3159011 317 : SerThrSerIleGlyAsnAlaIleTyrGluMetAsnTrpThrLeuLeuSerIleSe : 335 ||| !..!:!! ! !! !|||!:!.!.! :!!||||||! !|||!:!! !!: SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAs 3158737 : AGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAA : 3158791 336 : rGluLysArgAspLeuLeuMetIleMetLysArgSerAlaIleProIleLysPheT : 354 !! ! |||! ||||||!!:!!:|||!:!|||:!!!.!! ||||||:!!|||| nValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheT 3158792 : CGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCA : 3158848 355 : hrSerSerPheLeuIleThrPheSerLeuGluAlaTyrSerSer >>>> Targe : 369 |||||! ! !:!!:!!:!! ! !:!||||||:!!!:!! !:!! hrSerIleHisValValSerValAsnLeuGluSerPheMetAla++ 3158849 : CCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt.......... : 3158895 370 : t Intron 1 >>>> IleLeuLysThrSerTyrSerAlaPheAsnValLeuGln : 381 74 bp :!!:!!||||||:!!|||||||||||||||:!!:!!||| ++ValIleLysThrAlaTyrSerAlaPheAsnMetIleGln 3158896 : ...............agGTAATAAAAACTGCGTACTCCGCGTTCAACATGATCCAA : 3159003 382 : GlnSer : 383 |||||| GlnSer 3159004 : CAAAGC : 3159011 vulgar: CbirOr182 316 383 . KQ414646.1 3158736 3159011 + 124 M 52 156 5 0 2 I 0 70 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158737 3159011 124 + . gene_id 6 ; sequence CbirOr182 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3158737 3158892 . + . KQ414646.1 exonerate:protein2genome:local exon 3158737 3158892 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158893 3158894 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158893 3158966 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3158965 3158966 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158967 3159011 . + . KQ414646.1 exonerate:protein2genome:local exon 3158967 3159011 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3158737 3159011 124 + . alignment_id 6 ; Query CbirOr182 ; Align 3158737 317 156 ; Align 3158967 369 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr182 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 120 -> 218 Target range: 3155400 -> 3155694 121 : ArgSerSerSerIleLysTyrSerLeuLeuAlaThrGlySerIleThrSerPheTh : 139 |||!!!||||||! ! ! |||:!!:!!|||!.! !..!!!!:!:! !!!!!!.:! ArgArgSerSerThrTyrTyrAlaIleLeuValGluSerThrValMetThrLeuSe 3155401 : AGAAGAAGCTCAACCTATTACGCGATTCTGGTCGAATCGACGGTGATGACTTTGTC : 3155455 140 : rIleArgSerLeuLeuAsnValLeuGlnGlyHisLeuProTyrArgValTrpLeuP : 158 !.!! !!:!!||||||!!. ! !..! !!! !||||||||||||:!!||||||| rPheGlyAlaLeuLeuLysProGluSerArgProLeuProTyrArgIleTrpLeuP 3155456 : TTTCGGTGCACTGTTGAAACCAGAATCACGTCCTTTACCGTATCGAATTTGGCTAC : 3155512 159 : roTyrAspSerAspGluSerLeuMetPheTrpIleThrSerIleHisGlnIleIle : 176 ||! !:!!! ! ! !! !:!!! !:!!! ! !! !! !! !||| !:!: roCysAsnTyrThrProLeuIleThrTyrCysSerIleTyrThrLeuGlnCysVal 3155513 : CTTGCAATTACACCCCGTTAATTACTTACTGTTCGATTTACACTCTCCAATGTGTG : 3155566 177 : ThrLeuIlePheAlaThrIleIleAsnValGlyThrGluThrLeuIlePheGlyLe : 195 .!!||| !.!.::!.!!!!:!!::!!|||!.! !!!:!:!||||||! !||||| AlaLeuAlaLeuSerAlaMetMetHisValAlaCysAspSerLeuIleCysGlyLe 3155567 : GCACTCGCTCTAAGCGCTATGATGCACGTCGCCTGCGACAGTTTGATCTGCGGCCT : 3155623 196 : uPheLeuGlnThrCysValGlnLeuGluIlePheGluSerArgLeuHisLysLeuI : 214 |.!.|||!!.|||! !! !|||:!!||||||.!!! !!!|||||| ::: uLeuLeuHisThrTyrGlyGlnIleGluIleLeuGlyCysArgLeuLysThrIleL 3155624 : GCTGTTACACACTTACGGCCAGATCGAGATCCTCGGTTGTCGTCTGAaaacgataa : 3155680 215 : leIleAsnLysThr : 218 |||:::::: ysGluAsnGluSer 3155681 : aagaaaacgagagt : 3155694 vulgar: CbirOr182 120 218 . KQ414646.1 3155400 3155694 + 123 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155401 3155694 123 + . gene_id 7 ; sequence CbirOr182 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155401 3155694 . + . KQ414646.1 exonerate:protein2genome:local exon 3155401 3155694 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155401 3155694 123 + . alignment_id 7 ; Query CbirOr182 ; Align 3155401 121 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr182 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 126 -> 213 Target range: 3157809 -> 3158070 127 : TyrSerLeuLeuAlaThrGlySerIleThrSerPheThrIleArgSerLeuLeuAs : 145 !::||||||||| ...::!.!! !! !!:!..!! ! ! !|||:!!:! TrpSerLeuLeuLeuIleSerThrPhePheIleTyrValArgSerLeuLeuIleAs 3157810 : TGGAGtttactattaatttctacGTTCTTTATATACGTGAGATCGCTTTTGATAGA : 3157864 146 : nValLeuGlnGlyHisLeuProTyrArgValTrpLeuProTyrAspSerAspGluS : 164 ! !! !.!. !! ! ||| !!:!|||!.!|||:!!|||||||||! !..! : pPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrAspTyrSerProA 3157865 : TTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACGATTACTCCCCTG : 3157921 165 : erLeuMetPheTrpIleThrSerIleHisGlnIleIleThrLeuIlePheAlaThr : 182 !!! !!!:||| :!!||||||:!!|||||| !|||.!!! !! .!...! ! laProIlePheIleLeuThrSerValHisGlnAlaIleAlaSerThrIleCysCys 3157922 : CGCCCATTTTTATCCTTACCTCCGTCCATCAAGCTATAGCCTCGACGATATGTTGC : 3157975 183 : IleIleAsnValGlyThrGluThrLeuIlePheGlyLeuPheLeuGlnThrCysVa : 201 ! ! !.!||| !..!!!:|||||| ! !||||||!!.:!!.!.! !! ! ThrSerThrValThrValAspThrLeuTyrThrGlyLeuLeuIleAsnIleTyrCy 3157976 : ACTTCGACCGTCACTGTGGATACTCTATACACTGGCTTGTTGATTAATATCTACTG : 3158032 202 : lGlnLeuGluIlePheGluSerArgLeuHisLysLeu : 213 !|||!!!||||||.!.||| !||||||...!!.:!! sGlnPheGluIleLeuGluHisArgLeuArgAsnVal 3158033 : CCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTT : 3158070 vulgar: CbirOr182 126 213 . KQ414646.1 3157809 3158070 + 118 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157810 3158070 118 + . gene_id 8 ; sequence CbirOr182 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3157810 3158070 . + . KQ414646.1 exonerate:protein2genome:local exon 3157810 3158070 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157810 3158070 118 + . alignment_id 8 ; Query CbirOr182 ; Align 3157810 127 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr182 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 118 -> 213 Target range: 3164310 -> 3164598 119 : PheIleArgSerSerSerIleLysTyrSerLeuLeuAlaThrGlySerIleThrSe : 137 |||.!!|||!!!!:!!!!||| |||!!! !||| ! ! !!!! !!! PhePheArgTrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleCysAlaPheTr 3164311 : TTTTTTAGATGGAACACGATTGGCTACTGGAGTTTACTATTAATTTGTGCGTTCTG : 3164365 138 : rPheThrIleArgSerLeuLeuAsnValLeuGlnGlyHis<->LeuProTyrArgV : 155 !.!. !:!:||||||||||||!..! !!!!....!!... ||| !!:!|||! pIleTyrValArgSerLeuLeuThrAspPheSerSerArgLysLeuMetPheArgA 3164366 : GATATACGTGAGATCGCTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAG : 3164422 156 : alTrpLeuProTyrAspSerAspGluSerLeuMetPheTrpIleThrSerIleHis : 173 .!|||||||||||||||! !..! :!!! !!!:||| :!!|||! !:!!||| laTrpLeuProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHis 3164423 : CATGGTTACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCAT : 3164476 174 : GlnIleIleThrLeuIlePheAlaThrIleIleAsnValGlyThrGluThrLeuIl : 192 ||| !|||.!! !! .!...! !! ! !:!||| !..!!!::!!||| GlnAlaIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTy 3164477 : CAAGCTATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATA : 3164533 193 : ePheGlyLeuPheLeuGlnThrCysValGlnLeuGluIlePheGluSerArgLeuH : 211 ! !||||||!!.:!!.!.! !! ! !|||!!!||||||.!.||| !||||||. rThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuA 3164534 : CACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAA : 3164590 212 : isLysLeu : 213 ..!!.:!! rgAsnVal 3164591 : GGAACGTT : 3164598 vulgar: CbirOr182 118 213 . KQ414646.1 3164310 3164598 + 107 M 32 96 G 0 3 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164311 3164598 107 + . gene_id 9 ; sequence CbirOr182 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164311 3164598 . + . KQ414646.1 exonerate:protein2genome:local exon 3164311 3164598 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164311 3164598 107 + . alignment_id 9 ; Query CbirOr182 ; Align 3164311 119 96 ; Align 3164410 151 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr182 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 250 -> 316 Target range: 3180466 -> 3180667 251 : AlaLysThrLeuAsnSerIlePheAsnGlnValLeuPhePheGlnPhePheGlySe : 269 |||:!!! !:!!|||..!! !.!..!.! !..!:!!||| !|||||||||||||| AlaGluIleMetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePheGlySe 3180467 : GCTGAAATAATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTTCGGAAG : 3180521 270 : rIleLeuValLeuCysThrSer<->ValTyrTyrMetSerThrHisIleSerGlyS : 287 |.!!:!!|||:!!||| !||| :!! ! ! :!:!:!.!! !!||| !.!!! rPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleLeuSerT 3180522 : CTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTCTCAGCA : 3180578 288 : erGluAlaAlaThrLeuProAlaTyrThrValCysMetPheValGlnIlePheVal : 305 !!||| ! !.!! ! ||| :::.!.:!!|||! !|||:!! hrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPheLeu 3180579 : CCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGCTTTCTT : 3180632 306 : TyrCysTrpSerGlyAsnGluValIleLeuLys : 316 |||||||||! !||||||||||||! ! !||| TyrCysTrpTyrGlyAsnGluValArgThrLys 3180633 : TACTGTTGGTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: CbirOr182 250 316 . KQ414646.1 3180466 3180667 + 107 M 26 78 G 0 3 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180467 3180667 107 + . gene_id 10 ; sequence CbirOr182 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180467 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180467 3180667 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180467 3180667 107 + . alignment_id 10 ; Query CbirOr182 ; Align 3180467 251 78 ; Align 3180548 277 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr183 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 275 Query range: 0 -> 213 Target range: 3159620 -> 3160338 1 : MetGlnIleLeuSerLeuAsnPhePheMetHisThrLeuGlyGlyValTrpArgPr : 19 |||!!.! |||..!|||:::!!. ! |||:!! !!||| ! ||||| MetHisThrLeuGlnLeuSerLeuLysThrLeuThrIleCysGlyTyrIleArgPr 3159621 : ATGCACACGTTGCAATTGTCGTTGAAAACTTTGACGATTTGCGGCTACATAAGGCC : 3159675 20 : oIleGluTrpSerSerThrGlyAlaLysLeuLeuTyrAsnValTyrThrSerIleT : 38 |! !..!|||!.!||| !!||| !||||||||||||||||||:!!||| !! !. oThrSerTrpLysSerProGlyLeuLysLeuLeuTyrAsnValHisThrValThrV 3159676 : AACATCGTGGAAGTCACCGGGGCTAAAGCTTCTCTATAACGTACACACGGTTACTG : 3159732 39 : hrIleValHisLeuTyrPheLeuMetLeuThrGlnPheMetAspLeuLeuPheIle : 56 .!:!:||| !||| ! !!!.!.:!!.!!|||.!.:!:|||::::::||| alValValValLeuSerThrPhePheValAlaGlnIleLeuAspIleIlePheAsn 3159733 : TAGTGGTAGTTCTTAGCACGTTTTTCGTCGCCCAGATATTggacattattttcaac : 3159786 57 : ValAspAsnLeuAspAspPheAlaThrAsnSerLeuMetPheMetThrValValAl : 75 |||!!:|||! !|||!!:|||::! !|||! !! !!!: !|||:!! ValGluAsnGlnAspGluPheSerAspAsnPheCysIleThrCysCysValMetAs 3159787 : gtgGAGAATCAAGACGAGTTTAGCGACAATTTCTGCATAACGTGCTGCGTGATGAA : 3159843 76 : aValCysSerLysAlaThrValAlaValLeuArgArgAsnThrIleIleAspLeuV : 94 ! ! !.!!||| ! ! ! !:!!:!! !!|||.!.! !||| !:!!|||: nSerLeuGlyLysLeuTyrSerLeuLeuIleGlyArgGluMetIleGlnAsnLeuI 3159844 : CAGCCTTGGAAAGTTGTACAGCTTGCTGATAGGACGAGAAATGATCCAAAATTTAA : 3159900 95 : alGlnIleLeuLeuLysAspProCysLysProArgAsnGluThrGluLeuValIle : 112 !!.!. |||! !!..|||||| !!:!||| !:!!|||..!||| !! !||| leAspSerLeuGlnSerAspProLeuArgProLeuAspGluValGluAsnGluIle 3159901 : TAGACTCGCTACAAAGTGACCCTCTTAGGCCGTTGGACGAAGTGGAGAATGAAATT : 3159954 113 : GlnThrLysCysAsnGluPheIle{Ar} >>>> Target Intron 1 >>>> : 121 !:! !!:! !.!.:!! |||{..} 73 bp ArgLeuArgHisGluLysThrIle{Gl}++ + 3159955 : CGATTGAGACACGAGAAGACAATC{GA}gt.........................a : 3160054 122 : {g}SerIleSerIleLysTyrSerLeuLeuAlaThrCysSerValThrGlyValT : 139 {!}!.!:!!|||!!: |||!!!:!!! !.!!..! |||!.!||||||||| +{u}LysLeuSerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValT 3160055 : g{A}AAGCTCTCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTAT : 3160108 140 : hrIleArgSerValLeuAsnValMetGlu<->GlyGlnLeuProTyrArgValTrp : 156 !!!: !|||!.!:!!!..!.!.!...! !!:!!|||||| !||||||||| rpMetLeuSerAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrp 3160109 : GGATGTTGTCGGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGG : 3160162 157 : LeuProTyrAspSerAspGluPro<->SerMetPheTrpIleThrSerIleLeuGl : 174 ||||||!:!|||! ! ! !! .!!!!:||| ! :!!|||! ! !! !|| LeuProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGl 3160163 : TTACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCA : 3160219 175 : nIleIleSerIleIleTyrCysThrIleIleAsnValGlyThrGluThrLeuMetP : 193 |.!!:!!!!!:!:|||!:! !|||! ! ! !:!!||||||!!:!.!|||.!. nPheValThrLeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheS 3160220 : GTTTGTAACTCTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCA : 3160276 194 : heGlyLeuPheLeuGlnThrCysIleGlnLeuGluIlePheGluAsnArgLeuArg : 211 !||||||!!.:!!!!.! !! ! !|||!!!||||||.!!:!!:!!||||||!:! erGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLys 3160277 : GCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAG : 3160330 212 : ArgLeu : 213 !!!:!! SerIle 3160331 : AGCATT : 3160338 vulgar: CbirOr183 0 213 . KQ414646.1 3159620 3160338 + 275 M 120 360 S 0 2 5 0 2 I 0 69 3 0 2 S 1 1 M 27 81 G 0 3 M 16 48 G 0 3 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3159621 3160338 275 + . gene_id 1 ; sequence CbirOr183 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3159621 3159982 . + . KQ414646.1 exonerate:protein2genome:local exon 3159621 3159982 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3159983 3159984 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3159983 3160055 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3160054 3160055 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3160056 3160338 . + . KQ414646.1 exonerate:protein2genome:local exon 3160056 3160338 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3159621 3160338 275 + . alignment_id 1 ; Query CbirOr183 ; Align 3159621 1 360 ; Align 3160057 122 81 ; Align 3160141 149 48 ; Align 3160192 165 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr183 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 194 Query range: 3 -> 123 Target range: 3179622 -> 3179979 4 : LeuSerLeuAsnPhePheMetHisThrLeuGlyGlyValTrpArgProIleGluTr : 22 ::!|||::: ||| ... ::!:!!|||||| !||||||||||||..!|| ValSerValLeuPheThrPheLeuSerIleGlyGlyCysTrpArgProIleSerTr 3179623 : gtATCGGtactttttacatttctcaGTATCGGTGGCTGTTGGAGACCGATCTCGTG : 3179677 23 : pSerSerThrGlyAlaLysLeuLeuTyrAsnValTyrThrSerIleThrIleValH : 41 |||||||||| ! !! ! !:!!||||||||||||||| !:!!..!:!!:!! pSerSerThrTyrLysThrAlaIleTyrAsnValTyrThrValLeuValLeuIleM 3179678 : GTCTTCGACGTACAAAACGGCAATCTACAATGTCTACACCGTTCTCGTATTAATCA : 3179734 42 : isLeuTyrPheLeuMetLeuThrGlnPheMetAspLeuLeuPheIleValAspAsn : 59 ! ! !!!!|||:!!:!!|||||| ! ! !:!!|||! !:!!!!:!.! etGlyValAsnPheMetValSerGlnPhe---GlySerMetPheThrIleGluThr 3179735 : TGGGTGTTAATTTCATGGTTTCGCAATTT---GGCAGCATGTTCACCATAGAAACC : 3179785 60 : LeuAspAspPheAlaThrAsnSerLeuMetPheMetThrValValAlaValCysSe : 78 :!!.!.||||||!.! ! !!!!! !!!:! !:!::!!||| !!!.!! !|||!! ValGlnAspPheValAspLeuThrTyrIleCysValSerValPheValGlyCysCy 3179786 : GTACAAGATTTCGTCGACCTTACTTACATATGCGTCTCCGTGTTCGTCGGTTGTTG : 3179842 79 : rLysAlaThrValAlaValLeuArgArgAsnThrIleIleAspLeuValGlnIleL : 97 !||| !:!! !!.!|||!!! !|||!!. !||||||||||||:!!.!.|||! sLysLeuSerAsnValValPheTyrArgLysAspIleIleAspLeuMetAsnIleP 3179843 : CAAGCTGTCAAACGTGGTGTTCTATCGGAAAGATATCATAGACCTGATGAACATCT : 3179899 98 : euLeuLysAspProCysLysProArgAsnGluThrGluLeuValIleGlnThrLys : 115 !!:!!:!!||||||||| ! ! !|||:!! !||| ! !:!:|||.!!!:! heMetGluAspProCysAlaCysSerAsnLysGluGluAspGlnValGlnAlaArg 3179900 : TCATGGAGGATCCTTGTGCATGTTCGAACAAGGAGGAGGACCAGGTGCAAGCGAGA : 3179953 116 : CysAsnGluPheIleArgSerIle : 123 ! !:!!!!: :!!||||||:!! TyrAspAspGlnLeuArgSerVal 3179954 : TACGACGATCAATTACGGTCAGTA : 3179979 vulgar: CbirOr183 3 123 . KQ414646.1 3179622 3179979 + 194 M 47 141 G 1 0 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3179623 3179979 194 + . gene_id 2 ; sequence CbirOr183 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3179623 3179979 . + . KQ414646.1 exonerate:protein2genome:local exon 3179623 3179979 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3179623 3179979 194 + . alignment_id 2 ; Query CbirOr183 ; Align 3179623 4 141 ; Align 3179764 52 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr183 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 186 Query range: 120 -> 316 Target range: 3150032 -> 3150808 121 : ArgSerIleSerIleLysTyrSerLeuLeuAlaThrCysSerValThrGlyValTh : 139 ||||||:!:!!!||| ! |||!!!:!!|||!.! ! !!!!||| ! !!:!!! ArgSerValThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCysMetIl 3150033 : AGGTCGGTGACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTGTATGAT : 3150087 140 : rIleArgSerValLeu<->AsnValMetGluGlyGlnLeuProTyrArgValTrpL : 157 !:!! !|||:!!||| :!! !!! ||| !!:!!||| !!||||||!.!|||| eLeuSerSerLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgAlaTrpL 3150088 : CCTCTCTTCGTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAGCCTGGC : 3150144 158 : euProTyrAspSerAspGluProSerMetPheTrpIleThrSerIleLeuGlnIle : 175 |||||!:!|||! !..! !|||!!! !:!!::|||.!!! !:!!! !|||||| euProPheAspTyrSerLeuProThrTyrTyrTyrIleAlaTyrValHisGlnIle 3150145 : TGCCCTTCGATTACTCTCTGCCAACTTACTATTACATCGCGTACGTTCATCAGATC : 3150198 176 : IleSerIleIleTyrCysThrIleIleAsnValGlyThrGluThrLeuMetPheGl : 194 :!!:!!:!:||| ! :!!:!! ||||||!.! !!!:..!:!!!!:! !|| ValAlaLeuIleGlyThrSerLeuSerAsnValAlaCysAspValIleIleCysGl 3150199 : GTCGCGCTGATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCATCTGCGG : 3150255 195 : yLeuPheLeuGlnThrCysIleGlnLeuGluIlePheGluAsnArgLeuArgArgL : 213 ||||.!!:!!!!..!!||| !|||! !||||||.!!:!!:!!|||:!!!:!..!: yLeuLeuValHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMetLysGluM 3150256 : GTTGCTCGTTCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATGAAGGAGA : 3150312 214 : euValIleAsnLysThrSerGlyTyr{A} >>>> Target Intron 1 >>>> : 222 !!..! .!.:!!! ! !!..! !{.} 179 bp etThrGlnGluGlnArgProAsnIle{G}+- 3150313 : TGACGCAGGAACAGAGGCCGAATATC{G}gg......................... : 3150342 223 : {rg}GluTyrLeuProHisLysSerLeuAspThrGluGluGluMetAsnIleSe : 239 {.!}|||:::||| ! |||..!! ! !!..!..!...|||! ! !! -+{lu}GluPheLeuPheLeuLysAsp***TyrValArgSerGluArgLeuAlaTh 3150343 : cg{aa}gaatttctcttCTTAAAAGATTGATACGTGAGGTCCGAAAGGTTGGCGAC : 3150569 240 : rGlyTyrIleAsnHisHisLeuCysIlePheAsnTyrAlaLysThrLeuAsnArgI : 258 !!.!!! :!!!.. !!:!!! ! ! !!..|||!.! |||:!!.!...!! rAla***LeuArgTrpAspValSerGluArgArgTyrValPheThrMetGlnGluL 3150570 : CGCTTAATTAAGATGGGACGTATCTGAACGCAGGTACGTTTTCACGATGCAAGAGA : 3150626 259 : lePheSerGlnValLeuPheCysGlnPhePheAlaSerIleLeuIleLeuCysThr : 276 |||!!! !:!!:!! ! |||.!!!!.:!!|||! |||:!!:!!||| ! ysPheArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuValValCysPhe 3150627 : AGTTCAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGGTAGTGTGTTTC : 3150680 277 : SerValTyrTyrMetSerMetIleLys<-><->GlySerGluAlaAlaThrLeuIl : 293 ! !:!!||| ! :!!:!!! ! .!!|||:!! ! ! !!!!:! IleLeuTyrGluLeuAlaAsnThrProProIleSerSerLysTyrLeuGlnPheVa 3150681 : ATCCTGTACGAATTGGCGAACACGCCTCCAATCAGCTCCAAGTACCTGCAATTTGT : 3150737 294 : eValTyrThrPheCysMetSerValGlnIlePheIleTyrCysTrpSerGlyAsnG : 312 !:!!||| ! !||||||! !..!|||||||||.!!|||||||||! !|||.!.: lLeuTyrLeuAlaCysMetMetThrGlnIlePhePheTyrCysTrpTyrGlyGluG 3150738 : CCTGTACCTGGCCTGTATGATGACGCAGATCTTCTTTTACTGCTGGTACGGCGAGC : 3150794 313 : luValIleThrLys : 316 !!:!!! ! !||| lnLeuLysLeuLys 3150795 : AGTTGAAACTGAAG : 3150808 vulgar: CbirOr183 120 316 . KQ414646.1 3150032 3150808 + 186 M 24 72 G 0 3 M 77 231 S 0 1 5 0 2 I 0 175 3 0 2 S 1 2 M 63 189 G 0 6 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150033 3150808 186 + . gene_id 3 ; sequence CbirOr183 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3150033 3150339 . + . KQ414646.1 exonerate:protein2genome:local exon 3150033 3150339 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150340 3150341 . + . intron_id 1 ; splice_site "GG" KQ414646.1 exonerate:protein2genome:local intron 3150340 3150518 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150517 3150518 . + . intron_id 0 ; splice_site "cg" KQ414646.1 exonerate:protein2genome:local cds 3150519 3150808 . + . KQ414646.1 exonerate:protein2genome:local exon 3150519 3150808 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150033 3150808 186 + . alignment_id 3 ; Query CbirOr183 ; Align 3150033 121 72 ; Align 3150108 145 231 ; Align 3150521 223 189 ; Align 3150716 286 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr183 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 314 -> 373 Target range: 3178740 -> 3178917 315 : ThrLysSerThrSerIleGlyAsnAlaValTyrGluMetAsnTrpThrLeuLeuSe : 333 :!!:!!||| !!.!:!!|||.!.|||:!!|||||||||:!!|||||| !||| ! SerGlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuPr 3178741 : TCCCAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCC : 3178795 334 : rIleSerGluLysArgAspLeuLeuMetIleMetLysArgSerSerMetProIleL : 352 !! !..! !!:!!:!|||||||||:!!|||||| !||||||!.! |||:!!| oThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValL 3178796 : CACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTA : 3178852 353 : ysPheThrSerSerPheLeuIleThrPheSerLeuGluSerTyrSerAsnIleLeu : 370 ||.!.||||||.!! !:!!:!!..!!!.||| !||||||!:!! !::!:!! ! ysMetThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerValSer 3178853 : AAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTTAGT : 3178906 371 : LysThrSer : 373 !:!! !||| ArgIleSer 3178907 : AGAATTTCC : 3178917 vulgar: CbirOr183 314 373 . KQ414646.1 3178740 3178917 + 137 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178741 3178917 137 + . gene_id 4 ; sequence CbirOr183 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178741 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178741 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178741 3178917 137 + . alignment_id 4 ; Query CbirOr183 ; Align 3178741 315 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr183 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 316 -> 383 Target range: 3165264 -> 3165539 317 : SerThrSerIleGlyAsnAlaValTyrGluMetAsnTrpThrLeuLeuSerIleSe : 335 ||| !..!:!! ! !! !:!!!:!.!.! :!!||||||! !|||!:!! !!: SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAs 3165265 : AGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAA : 3165319 336 : rGluLysArgAspLeuLeuMetIleMetLysArgSerSerMetProIleLysPheT : 354 !! ! |||! ||||||!!:!!:|||!:!|||:!! !! !||||||:!!|||| nValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheT 3165320 : CGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCA : 3165376 355 : hrSerSerPheLeuIleThrPheSerLeuGluSerTyrSerAsn >>>> Targe : 369 |||||! ! !:!!:!!:!! ! !:!|||||||||!:!! ! hrSerIleHisValValSerValAsnLeuGluSerPheMetAla++ 3165377 : CCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt.......... : 3165423 370 : t Intron 1 >>>> IleLeuLysThrSerTyrSerAlaPheAsnIleLeuGln : 381 74 bp :!!:!!||||||||||||||||||||||||!!::!!||| ++ValIleLysThrSerTyrSerAlaPheAsnMetIleGln 3165424 : ...............agGTAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAA : 3165531 382 : ArgSer : 383 !:!||| GlnSer 3165532 : CAAAGC : 3165539 vulgar: CbirOr183 316 383 . KQ414646.1 3165264 3165539 + 122 M 52 156 5 0 2 I 0 70 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3165265 3165539 122 + . gene_id 5 ; sequence CbirOr183 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3165265 3165420 . + . KQ414646.1 exonerate:protein2genome:local exon 3165265 3165420 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165421 3165422 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165421 3165494 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3165493 3165494 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165495 3165539 . + . KQ414646.1 exonerate:protein2genome:local exon 3165495 3165539 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3165265 3165539 122 + . alignment_id 5 ; Query CbirOr183 ; Align 3165265 317 156 ; Align 3165495 369 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr183 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 249 -> 328 Target range: 3155805 -> 3156048 250 : AsnTyrAlaLysThrLeuAsnArgIlePheSerGlnValLeuPheCysGlnPhePh : 268 !..!:!.!! ! !:!!|||..! !|||..!..!!.!:!!||| !|||||| ArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAl 3155806 : AGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGC : 3155860 269 : eAlaSerIleLeuIleLeuCysThrSerValTyrTyrMet<-><->SerMetIleL : 285 !.!|||! ||| :!!||| !!:!:!!||| :!: ||| :!:! aValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValT 3155861 : GGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGA : 3155917 286 : ysGlySerGluAlaAlaThrLeuIleValTyrThrPheCysMetSerValGlnIle : 303 ! !! !..! !!.! !:!!|||:!!|||!:! !|||||| !..!|||||| hrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIle 3155918 : CGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATA : 3155971 304 : PheIleTyrCysTrpSerGlyAsnGluValIleThrLysSerThrSerIleGlyAs : 322 |||||||||||||||! !||||||||||||! !||| !:!!! !.!! !!:! PheIleTyrCysTrpTyrGlyAsnGluValLysLeuLysValSerTyrPheArgHi 3155972 : TTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAGGTTTCTTATTTTCGACA : 3156028 323 : nAlaValTyrGluMetAsn : 328 !..! !||| !:!:||| sCysSerTyrLeuLeuAsn 3156029 : TTGTTCATATTTGCTAAAT : 3156048 vulgar: CbirOr183 249 328 . KQ414646.1 3155805 3156048 + 120 M 32 96 G 0 6 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155806 3156048 120 + . gene_id 6 ; sequence CbirOr183 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155806 3156048 . + . KQ414646.1 exonerate:protein2genome:local exon 3155806 3156048 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155806 3156048 120 + . alignment_id 6 ; Query CbirOr183 ; Align 3155806 250 96 ; Align 3155908 282 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr183 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 126 -> 227 Target range: 3164337 -> 3164640 127 : TyrSerLeuLeuAlaThrCysSerValThrGlyValThrIleArgSerValLeuAs : 145 !::||||||||| !! !|||:!! !! ! ! !..!! ! ! !:!! !:! TrpSerLeuLeuLeuIleCysAlaPheTrpIleTyrValArgSerLeuLeuThrAs 3164338 : TGGAGTTTACTATTAATTTGTGCGTTCTGGATATACGTGAGATCGCTTTTGACAGA : 3164392 146 : nValMetGluGlyGlnLeuProTyrArgValTrpLeuProTyrAspSerAspGluP : 164 ! !!! ... !!:!!||| !!:!|||!.!|||||||||||||||! !..! pPheSerSerArgLysLeuMetPheArgAlaTrpLeuProTyrAspTyrSerProA 3164393 : TTTTAGTAGTAGAAAACTGATGTTTCGAGCATGGTTACCCTACGATTACTCCCCTG : 3164449 165 : roSerMetPheTrpIleThrSerIleLeuGlnIleIleSerIleIleTyrCysThr : 182 !! !!!!:||| :!!|||! !:!!! !||| !|||:!! ! ||| ! laProIlePheIleLeuThrPheValHisGlnAlaIleAlaAlaThrIleCysCys 3164450 : CGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCGACGATATGTTGC : 3164503 183 : IleIleAsnValGlyThrGluThrLeuMetPheGlyLeuPheLeuGlnThrCysIl : 201 ! ! !:!||| !..!!!::!!||| !||||||!!.:!!.!.! !! ! ThrSerSerValThrValAspSerLeuTyrThrGlyLeuLeuIleAsnIleTyrCy 3164504 : ACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTGATTAATATCTACTG : 3164560 202 : eGlnLeuGluIlePheGluAsnArgLeuArgArgLeuValIleAsnLysThrSerG : 220 !|||!!!||||||.!.|||:!!|||||||||!.!:!! !! !.!.:!! !..!. sGlnPheGluIleLeuGluHisArgLeuArgAsnValLysThrGluGlnAspAspS 3164561 : CCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAACTGAGCAGGATGACT : 3164617 221 : lyTyrArgGluTyrLeuProHis : 227 .! !:!:!!! ! !! !||| erValLysGlnCysAlaGlnHis 3164618 : CTGTGAAGCAATGTGCTCAACAT : 3164640 vulgar: CbirOr183 126 227 . KQ414646.1 3164337 3164640 + 120 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164338 3164640 120 + . gene_id 7 ; sequence CbirOr183 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164338 3164640 . + . KQ414646.1 exonerate:protein2genome:local exon 3164338 3164640 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164338 3164640 120 + . alignment_id 7 ; Query CbirOr183 ; Align 3164338 127 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr183 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 316 -> 383 Target range: 3158736 -> 3159011 317 : SerThrSerIleGlyAsnAlaValTyrGluMetAsnTrpThrLeuLeuSerIleSe : 335 ||| !..!:!! ! !! !:!!!:!.!.! :!!||||||! !|||!:!! !!: SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAs 3158737 : AGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAA : 3158791 336 : rGluLysArgAspLeuLeuMetIleMetLysArgSerSerMetProIleLysPheT : 354 !! ! |||! ||||||!!:!!:|||!:!|||:!! !! !||||||:!!|||| nValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheT 3158792 : CGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCA : 3158848 355 : hrSerSerPheLeuIleThrPheSerLeuGluSerTyrSerAsn >>>> Targe : 369 |||||! ! !:!!:!!:!! ! !:!|||||||||!:!! ! hrSerIleHisValValSerValAsnLeuGluSerPheMetAla++ 3158849 : CCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt.......... : 3158895 370 : t Intron 1 >>>> IleLeuLysThrSerTyrSerAlaPheAsnIleLeuGln : 381 74 bp :!!:!!||||||:!!|||||||||||||||!!::!!||| ++ValIleLysThrAlaTyrSerAlaPheAsnMetIleGln 3158896 : ...............agGTAATAAAAACTGCGTACTCCGCGTTCAACATGATCCAA : 3159003 382 : ArgSer : 383 !:!||| GlnSer 3159004 : CAAAGC : 3159011 vulgar: CbirOr183 316 383 . KQ414646.1 3158736 3159011 + 119 M 52 156 5 0 2 I 0 70 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158737 3159011 119 + . gene_id 8 ; sequence CbirOr183 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3158737 3158892 . + . KQ414646.1 exonerate:protein2genome:local exon 3158737 3158892 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158893 3158894 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158893 3158966 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3158965 3158966 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158967 3159011 . + . KQ414646.1 exonerate:protein2genome:local exon 3158967 3159011 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3158737 3159011 119 + . alignment_id 8 ; Query CbirOr183 ; Align 3158737 317 156 ; Align 3158967 369 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr183 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 120 -> 218 Target range: 3155400 -> 3155694 121 : ArgSerIleSerIleLysTyrSerLeuLeuAlaThrCysSerValThrGlyValTh : 139 |||!!!! !|||! ! ! |||:!!:!!|||!.! !! !!!|||! ! !:!!:! ArgArgSerSerThrTyrTyrAlaIleLeuValGluSerThrValMetThrLeuSe 3155401 : AGAAGAAGCTCAACCTATTACGCGATTCTGGTCGAATCGACGGTGATGACTTTGTC : 3155455 140 : rIleArgSerValLeuAsnValMetGluGlyGlnLeuProTyrArgValTrpLeuP : 158 !.!! !!:!!:!!|||!!. ! ..! !!! ||||||||||||:!!||||||| rPheGlyAlaLeuLeuLysProGluSerArgProLeuProTyrArgIleTrpLeuP 3155456 : TTTCGGTGCACTGTTGAAACCAGAATCACGTCCTTTACCGTATCGAATTTGGCTAC : 3155512 159 : roTyrAspSerAspGluProSerMetPheTrpIleThrSerIleLeuGlnIleIle : 176 ||! !:!!! ! ! ! !! !! !:!!! ! !! !! !|||||| !:!: roCysAsnTyrThrProLeuIleThrTyrCysSerIleTyrThrLeuGlnCysVal 3155513 : CTTGCAATTACACCCCGTTAATTACTTACTGTTCGATTTACACTCTCCAATGTGTG : 3155566 177 : SerIleIleTyrCysThrIleIleAsnValGlyThrGluThrLeuMetPheGlyLe : 195 :!!:!! ! !!.!!!!:!!::!!|||!.! !!!:!:!|||!!:! !||||| AlaLeuAlaLeuSerAlaMetMetHisValAlaCysAspSerLeuIleCysGlyLe 3155567 : GCACTCGCTCTAAGCGCTATGATGCACGTCGCCTGCGACAGTTTGATCTGCGGCCT : 3155623 196 : uPheLeuGlnThrCysIleGlnLeuGluIlePheGluAsnArgLeuArgArgLeuV : 214 |.!.|||!!.|||! ! !|||:!!||||||.!!! !||||||!:: ::: uLeuLeuHisThrTyrGlyGlnIleGluIleLeuGlyCysArgLeuLysThrIleL 3155624 : GCTGTTACACACTTACGGCCAGATCGAGATCCTCGGTTGTCGTCTGAaaacgataa : 3155680 215 : alIleAsnLysThr : 218 |||:::::: ysGluAsnGluSer 3155681 : aagaaaacgagagt : 3155694 vulgar: CbirOr183 120 218 . KQ414646.1 3155400 3155694 + 110 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155401 3155694 110 + . gene_id 9 ; sequence CbirOr183 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155401 3155694 . + . KQ414646.1 exonerate:protein2genome:local exon 3155401 3155694 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155401 3155694 110 + . alignment_id 9 ; Query CbirOr183 ; Align 3155401 121 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr177 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 1062 Query range: 0 -> 376 Target range: 3177231 -> 3178917 1 : MetHisValLeuProLeuSerPheAlaLeuLeuThrTyrThrGlyTyrTrpArgPr : 19 |||||| !||||||||| !!|||||||||||||||! ! !|||||||||!:!|| MetHisArgLeuProLeuProPheAlaLeuLeuThrCysCysGlyTyrTrpLysPr 3177232 : ATGCATAGGCTTCCTTTGCCTTTCGCTCTGCTTACTTGCTGCGGCTACTGGAAACC : 3177286 20 : oValAspTrpProSerThrSerValLysTyrTrpAlaTyrCysIleTyrSerThrA : 38 |..! ! ||||||:!!!:!|||:!!||||||||| !||| !:!!||||||..! oThrLysTrpProAlaSerSerLeuLysTyrTrpLeuTyrAspValTyrSerValP 3177287 : GACAAAATGGCCAGCTAGTTCGCTGAAATACTGGCTGTACGACGTTTACTCGGTGT : 3177343 39 : laMetIlePheLeuLeuHisThrPheAlaLeuCysGlyLeuValAspCysPheMet : 56 !|||:!!|||||||||::: |||......|||!.!! !:!!|||! !!.!!: heMetValPheLeuLeuTyrPhePheThrPheCysAlaCysIleAspSerLeuIle 3177344 : TTATGGTCTTTTTGCTctattttttcacgttttgCGCATGCATAGACTCGTTGATC : 3177397 57 : IleLysAspValGluIlePheIleGluLysPheSerLeuPheLeuSerValLeuGl : 75 ! !||||||:!!:!!! .!.! !!!:|||||||||||||||:!!||||||!!!|| SerLysAspLeuLysThrMetThrAspLysPheSerLeuPheIleSerValPheGl 3177398 : AGCAAAGATCTCAAGACGATGACAGATAAGTTTTCTCTGTTCATCTCTGTGTTCGG : 3177454 76 : yValCysLeuLysValMetAsnLeuValLeuArgArgAspGluValIleGlyLeuT : 94 ||||! !||||||||| |||||| !!|||!:!|||! ..!:!!|||..!:!!! yValSerLeuLysValAlaAsnLeuPheLeuGlnArgGlyArgIleIleAsnValM 3177455 : TGTCTCTCTGAAAGTAGCCAATTTATTCCTTCAACGGGGGAGGATTATAAACGTGA : 3177511 95 : hrAspMetLeuValLysAspValCysThrProArgAspAsnTyrGluThrGluIle : 112 !:!!!!:|||:!!! !!!: !|||! !|||||||||.!. ! |||! ! !||| etAsnIleLeuLeuThrGluAsnCysIleProArgAspGluGlnGluLysIleIle 3177512 : TGAACATTTTGCTGACGGAGAATTGCATCCCGAGGGACGAGCAAGAAAAGATAATA : 3177565 113 : GlnGlnArgPheAspArgThrAla{Me} >>>> Target Intron 1 >>>> : 121 |||!:!!:! !|||!.! !|||{! } 316 bp GlnArgLysAsnAspAsnTyrAla{Ar}++ + 3177566 : CAACGGAAGAACGATAATTACGCG{AG}gt.........................a : 3177908 122 : {t}ThrIleThrIleTyrCysGluIleLeuAsnGluSerAlaValPhePheAlaT : 139 { }! !:!:|||||||||||||||||||||||||||||||||!.!|||!!.|||| +{g}LysLeuThrIleTyrCysGluIleLeuAsnGluSerAlaAlaPheLeuAlaT 3177909 : g{A}AAACTGACAATCTACTGCGAGATCCTGAACGAATCCGCCGCATTCTTAGCTA : 3177962 140 : hrValAlaGlnLeuLysHisTyrIleAspThrHisThrLeuProLeuSerAspTrp : 157 |||||||||||! !!!..!.!:!||| !:!! ! |||||||||:!!||||||||| hrValAlaGlnTyrAsnGluPheIleArgSerLysThrLeuProIleSerAspTrp 3177963 : CGGTAGCACAGTACAACGAATTCATACGCTCCAAGACTTTGCCAATATCCGACTGG : 3178016 158 : ValProTyrAspIleSerSerThrGlyValTyrTrpAlaThrValLeuHisGlnTh : 176 ||||||||||||:!:|||||| ! !:!!||| ! !:!!:!!||||||||||| ValProTyrAspLeuSerSerGlnLysLeuTyrThrIleSerLeuLeuHisGlnTh 3178017 : GTGCCTTACGATTTGTCCTCGCAAAAATTGTACACGATATCTCTGTTGCATCAAAC : 3178073 177 : rIleGlyLeuMetValCysAlaAsnAlaSerValAlaHisGluThrLeuIleSerG : 195 |||||||||||||||||||||||||.!!|||||||||:!!||||||||||||:!!| rIleGlyLeuMetValCysAlaAsnThrSerValAlaAsnGluThrLeuIleAlaG 3178074 : GATAGGCCTGATGGTCTGTGCGAACACCAGCGTGGCAAACGAAACACTTATCGCAG : 3178130 196 : lyPheMetIleGlnThrCysAlaGlnLeuAspIlePheCysHisArgAlaArgThr : 213 ||.!.|||||||||.!! !!||||||!!!!!:|||||||||||||||||||||!.! lyLeuMetIleGlnAlaGlyAlaGlnPheGluIlePheCysHisArgAlaArgAsn 3178131 : GGCTGATGATACAAGCTGGCGCGCAATTCGAGATATTTTGCCATCGAGCGAGAAAT : 3178184 214 : LeuProAsnLeuLeuGlnGluAlaGlnLysTyrSerThrSerLysAlaAspGlnLy : 232 ||| !! !|||||| !!!:.!!::!!:! !!||| !|||!:!! !! ! || LeuThrAlaLeuLeuLeuAspThrArgArgAsnSerGluSerArgGluAlaPheLy 3178185 : CTAACCGCCCTACTCTTGGATACCAGAAGAAACAGCGAGTCTAGAGAAGCTTTTAA : 3178241 233 : sMetArgGluArgGlnLeuIleArgGluPheValHisHisHisArgTyrIleTyr{ : 251 |! ||| !.!!:::::::: ...||||||...:!!|||! ! ! :!!|||{ sThrArgCysAsnArgIleLeuGlyAsnPheValGluTyrHisLeuGluValTyr{ 3178242 : GACCAGATGTAATCGaatacttggaaatttcgtggaATATCATCTGGAAGTTTAC{ : 3178298 252 : Ar} >>>> Target Intron 2 >>>> {g}PheAlaAspArgValThrAla : 258 !:} 87 bp {!}|||.!!.!.! !|||!.!.!! Ly}++ ++{s}PheThrGlnThrValAsnThr 3178299 : aa}gt.........................ag{a}TTTACACAGACGGTGAACACT : 3178406 259 : ValPheThrLeuMetIleLeuLeuGlnPheThrIleSerSerThrValLeuCysLe : 277 |||||| !! !||||||!!!|||||||||:!!||||||||||||||||||||||| ValPheGlnTyrMetIlePheLeuGlnPheSerIleSerSerThrValLeuCysLe 3178407 : GTGTTCCAGTACATGATTTTCCTGCAATTTTCCATCAGTTCGACGGTGCTGTGTTT : 3178463 278 : uSerValTyrGluMetSerLysLysAsnLeuLeuSerPheGluPheAlaTrpSerS : 296 ||||:!!|||:!!||||||! !! |||! !!!!|||.!..!.|||!.!|||!!!: uSerIleTyrLysMetSerThrIleAsnProPheSerMetAsnPheValTrpCysA 3178464 : GAGCATCTATAAAATGTCGACGATTAATCCATTTAGCATGAACTTCGTCTGGTGCG : 3178520 297 : erLeuTyrLeuGlyCysMetLeuMetGlnIlePheLeuTyrCysTrpPheGlyAsn : 314 !!! !|||||| !!|||||||||! !|||:!:!:!||||||||||||||||||||| laSerTyrLeuCysCysMetLeuThrGlnValTyrLeuTyrCysTrpPheGlyAsn 3178521 : CCTCCTATTTATGCTGTATGCTCACGCAGGTGTATTTATACTGTTGGTTCGGGAAC : 3178574 315 : GluValThrLeuLys >>>> Target Intron 3 >>>> SerAlaGluIle : 323 ||||||||||||||| 155 bp |||! !:!!:!! GluValThrLeuLys++ ++SerGluLysVal 3178575 : GAGGTGACGTTGAAGgt.........................agAGCGAAAAAGTA : 3178756 324 : GlySerAlaIleTyrGluMetAspTrpSerMetPheProThrAspLeuMetLysTh : 342 |||..!|||||||||||||||||||||!!! .!!|||||||||:!!! !||| GlyGluAlaIleTyrGluMetAspTrpThrAlaLeuProThrAspIleArgLysAs 3178757 : GGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCCCACCGATATAAGGAAAGA : 3178813 343 : rLeuLeuIleIleIleSerArgSerLysArgProIleThrIleThrSerGlyTyrI : 361 !||||||:!:|||!!::!!|||||||||||||||:!!! !!!:|||||||||:!!: pLeuLeuLeuIleMetAlaArgSerLysArgProValLysMetThrSerGlyHisV 3178814 : TCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTAAAATGACAAGCGGCCACG : 3178870 362 : leValThrLeuSerAsnGluSerPheMetLysIleIleArgIleSer : 376 !!|||..!|||||| ||||||||||||...:!!! !||||||||| alValValLeuSerAlaGluSerPheMetSerValSerArgIleSer 3178871 : TCGTCGTTTTATCCGCAGAATCATTTATGTCTGTTAGTAGAATTTCC : 3178917 vulgar: CbirOr177 0 376 . KQ414646.1 3177231 3178917 + 1062 M 120 360 S 0 2 5 0 2 I 0 312 3 0 2 S 1 1 M 129 387 S 0 2 5 0 2 I 0 83 3 0 2 S 1 1 M 68 204 5 0 2 I 0 151 3 0 2 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3177232 3178917 1062 + . gene_id 1 ; sequence CbirOr177 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3177232 3177593 . + . KQ414646.1 exonerate:protein2genome:local exon 3177232 3177593 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3177594 3177595 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3177594 3177909 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3177908 3177909 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3177910 3178299 . + . KQ414646.1 exonerate:protein2genome:local exon 3177910 3178299 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178300 3178301 . + . intron_id 2 ; splice_site "gt" KQ414646.1 exonerate:protein2genome:local intron 3178300 3178386 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3178385 3178386 . + . intron_id 1 ; splice_site "ag" KQ414646.1 exonerate:protein2genome:local cds 3178387 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178387 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178592 3178593 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3178592 3178746 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3178745 3178746 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3178747 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178747 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3177232 3178917 1062 + . alignment_id 1 ; Query CbirOr177 ; Align 3177232 1 360 ; Align 3177911 122 387 ; Align 3178388 252 204 ; Align 3178747 320 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr177 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 223 Query range: 250 -> 385 Target range: 3150601 -> 3151146 251 : ArgPheAlaAspArgValThrAlaValPheThrLeuMetIleLeuLeuGlnPheTh : 269 |||!:!!.! !! !:!! !! ! !|||! !! !!!:||| !:!!|||.!! ArgTyrValPheThrMetGlnGluLysPheArgTrpIleIleGlyValGlnLeuLe 3150602 : AGGTACGTTTTCACGATGCAAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTT : 3150656 270 : rIleSerSerThrValLeuCysLeuSerValTyrGluMetSerLysLysAsnLeuL : 288 ! |||!!! !|||:!!|||!!!! !:!!||||||:!!:!!!!.! ! !! !: uSerSerThrLeuValValCysPheIleLeuTyrGluLeuAlaAsnThrProProI 3150657 : ATCGAGCACGCTGGTAGTGTGTTTCATCCTGTACGAATTGGCGAACACGCCTCCAA : 3150713 289 : euSerPheGluPheAlaTrpSerSerLeuTyrLeuGlyCysMetLeuMetGlnIle : 306 !!|||! !:!!!:! ! ! ! !|||||||||!.!||||||:!!! !|||||| leSerSerLysTyrLeuGlnPheValLeuTyrLeuAlaCysMetMetThrGlnIle 3150714 : TCAGCTCCAAGTACCTGCAATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATC : 3150767 307 : PheLeuTyrCysTrpPheGlyAsnGluValThrLeuLys >>>> Target Int : 320 |||!!!|||||||||!:!|||.!.:!!:!!! !|||||| 61 bp PhePheTyrCysTrpTyrGlyGluGlnLeuLysLeuLys++ 3150768 : TTCTTTTACTGCTGGTACGGCGAGCAGTTGAAACTGAAGgt............... : 3150811 321 : ron 1 >>>> SerAlaGluIleGlySerAlaIleTyrGluMetAspTrpSerMe : 334 |||!.!||||||! ! !!.!!|||!:!||||||||||||! ! ++SerValGluIleValArgThrIlePheGluMetAspTrpIlePr 3150812 : ..........agAGCGTCGAGATTGTGCGCACGATCTTCGAAATGGATTGGATACC : 3150912 335 : tPheProThrAspLeuMetLysThrLeuLeuIleIleIleSerArgSerLysArgP : 353 .!!! !!.!! !:!!! !||| !|||:!!:!!:!: !!!|||:!!! !! !| oLeuGlnAsnGlyIleLysLysAspLeuIleValValAlaArgArgAlaMetIleP 3150913 : TCTCCAGAACGGTATCAAGAAGGATTTGATAGTCGTGGCGAGAAGAGCGATGATCC : 3150969 354 : roIleThrIleThrSerGlyTyrIleValThrLeuSerAsnGluSerPheMetLys : 371 ||||| !:!:|||!!!!.!|||!!: !!|||:!!..! .!.!!!|||:!:!.. roIleGluLeuThrCysAlaTyrMetPheThrMetAspLeuAsnThrPheValSer 3150970 : CGATCGAGTTGACCTGCGCGTACATGTTCACCATGGACTTGAACACCTTCGTCAGC : 3151023 372 : >>>> Target Intron 2 >>>> IleIleArgIleSerTyrSerAlaTyr : 380 79 bp :!::!:!:!!!:|||||||||.!!||| ++ ++LeuLeuLysMetSerTyrSerThrTyr 3151024 : gt.........................agCTGTTGAAAATGTCCTACTCGACGTAC : 3151129 381 : AsnValLeuLysLys : 385 |||:!!|||:!!!:! AsnLeuLeuGluArg 3151130 : AATCTGCTTGAAAGG : 3151146 vulgar: CbirOr177 250 385 . KQ414646.1 3150601 3151146 + 223 M 69 207 5 0 2 I 0 57 3 0 2 M 52 156 5 0 2 I 0 75 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150602 3151146 223 + . gene_id 2 ; sequence CbirOr177 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3150602 3150808 . + . KQ414646.1 exonerate:protein2genome:local exon 3150602 3150808 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150809 3150810 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150809 3150869 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150868 3150869 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150870 3151025 . + . KQ414646.1 exonerate:protein2genome:local exon 3150870 3151025 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3151026 3151027 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3151026 3151104 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3151103 3151104 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3151105 3151146 . + . KQ414646.1 exonerate:protein2genome:local exon 3151105 3151146 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150602 3151146 223 + . alignment_id 2 ; Query CbirOr177 ; Align 3150602 251 207 ; Align 3150870 320 156 ; Align 3151105 372 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr177 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 250 -> 343 Target range: 3155805 -> 3156084 251 : ArgPheAlaAspArgValThrAlaValPheThrLeuMetIleLeuLeuGlnPheTh : 269 ||||||.!!! !! !:!!!.!! ! !||| !:!! !|||!!! !||||||.! ArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAl 3155806 : AGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGC : 3155860 270 : rIleSerSerThrValLeuCysLeuSerValTyrGluMetSerLysLysAsnLeuL : 288 !:!:|||!!! !!.!:!!|||!!!!:!:!!||| !:!:!!! !..!:!!:!! aValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValT 3155861 : GGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGA : 3155917 289 : euSerPheGluPheAlaTrpSerSerLeuTyrLeuGlyCysMetLeuMetGlnIle : 306 ! !!.!!..!!:!!.! ! !! !:!!||| !.!!|||||||||! !|||||| hrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIle 3155918 : CGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATA : 3155971 307 : PheLeuTyrCysTrpPheGlyAsnGluValThrLeuLysSerAlaGluIleGlySe : 325 |||:!!|||||||||!:!||||||||||||! !|||||| !:!! ! .!! !! PheIleTyrCysTrpTyrGlyAsnGluValLysLeuLysValSerTyrPheArgHi 3155972 : TTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAGGTTTCTTATTTTCGACA : 3156028 326 : rAlaIleTyrGluMetAspTrpSerMetPheProThrAspLeuMetLysThrLeu : 343 !..! !||| !:!::!! :!! ||| !!.! !|||:!:... !||| sCysSerTyrLeuLeuAsnProAla***PheValAsnThrLeuLeuSerCysLeu 3156029 : TTGTTCATATTTGCTAAATCCTGCATAATTTGTTAACACTTTGTTATCTTGTTTA : 3156084 vulgar: CbirOr177 250 343 . KQ414646.1 3155805 3156084 + 153 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155806 3156084 153 + . gene_id 3 ; sequence CbirOr177 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155806 3156084 . + . KQ414646.1 exonerate:protein2genome:local exon 3155806 3156084 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155806 3156084 153 + . alignment_id 3 ; Query CbirOr177 ; Align 3155806 251 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr177 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 238 -> 319 Target range: 3180424 -> 3180667 239 : IleArgGluPheValHisHisHisArgTyrIleTyrArgPheAlaAspArgValTh : 257 :!:|||||| ..! ! ... ! |||!:! !! !!!!!!.|||!!:! !:!!!. LeuArgGluLysThrLysArg***ArgPheCysCysSerLeuAlaGluIleMetAs 3180425 : TTGCGCGAGAAAACGAAGAGATAACGATTCTGTTGCAGTTTAGCTGAAATAATGAA : 3180479 258 : rAlaValPheThrLeuMetIleLeuLeuGlnPheThrIleSerSerThrValLeuC : 276 !! ! !.!. !|||! !!!:!!! !|||||| ! !|||! !! !|||:!!| nAspSerLeuGlnLeuThrMetPheAlaGlnPhePheGlySerPheMetValIleC 3180480 : CGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTTCGGAAGCTTTATGGTGATCT : 3180536 277 : ysLeuSerValTyrGluMetSerLysLysAsnLeuLeuSerPheGluPheAlaTrp : 294 ||||||||:!! !:!!:!!! !!!. !:!!:!!|||||| !|||||| ! ! ysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleLeuSerThrGluPheLeuAla 3180537 : GCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTCTCAGCACCGAATTCTTAGCG : 3180590 295 : SerSerLeuTyrLeuGlyCysMetLeuMetGlnIlePheLeuTyrCysTrpPheGl : 313 !!!! ...||||||... :::|||:!!|||! !|||||||||||||||!:!|| ThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPheLeuTyrCysTrpTyrGl 3180591 : ACGAtattttatctgagctcgatACTGCTGCAGAGCTTTCTTTACTGTTGGTACGG : 3180647 314 : yAsnGluValThrLeuLys : 319 ||||||||||! ! !||| yAsnGluValArgThrLys 3180648 : AAACGAAGTGAGAACGAAG : 3180667 vulgar: CbirOr177 238 319 . KQ414646.1 3180424 3180667 + 139 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180425 3180667 139 + . gene_id 4 ; sequence CbirOr177 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180425 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180425 3180667 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180425 3180667 139 + . alignment_id 4 ; Query CbirOr177 ; Align 3180425 239 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr177 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 250 -> 319 Target range: 3164980 -> 3165184 251 : ArgPheAlaAspArgValThrAlaValPheThrLeuMetIleLeuLeuGlnPheTh : 269 ||||||:!! ! !:!|||!.!! !! !|||! !|||!!::!::!!! !|||||| ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3164981 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3165035 270 : rIleSerSerThrValLeuCysLeuSerValTyrGluMetSerLysLysAsnLeuL : 288 !||||||! !:!!|||:!!|||!!!!:!:!!|||..!|||!!!:!!! !!. : sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---M 3165036 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---A : 3165089 289 : euSerPheGluPheAlaTrpSerSerLeuTyrLeuGlyCysMetLeuMetGlnIle : 306 !!... :::|||... !||||||! ! !|||! :!!! !|||||| etAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 3165090 : TGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 3165143 307 : PheLeuTyrCysTrpPheGlyAsnGluValThrLeuLys : 319 |||! !|||||||||!:!||||||||||||! !! !||| PheTyrTyrCysTrpTyrGlyAsnGluValLysHisLys 3165144 : TTTTACTATTGCTGGTACGGCAACGAAGTGAAACATAAG : 3165184 vulgar: CbirOr177 250 319 . KQ414646.1 3164980 3165184 + 135 M 36 108 G 1 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164981 3165184 135 + . gene_id 5 ; sequence CbirOr177 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164981 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164981 3165184 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3164981 3165184 135 + . alignment_id 5 ; Query CbirOr177 ; Align 3164981 251 108 ; Align 3165089 288 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr177 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 250 -> 316 Target range: 3158452 -> 3158647 251 : ArgPheAlaAspArgValThrAlaValPheThrLeuMetIleLeuLeuGlnPheTh : 269 ||||||:!! ! !:!|||!.!! !! !|||! !|||!!::!::!!! !|||||| ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3158453 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3158507 270 : rIleSerSerThrValLeuCysLeuSerValTyrGluMetSerLysLysAsnLeuL : 288 !||||||! !:!!|||:!!|||!!!!:!:!!|||..!|||!!!:!!! !!. : sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---M 3158508 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---A : 3158561 289 : euSerPheGluPheAlaTrpSerSerLeuTyrLeuGlyCysMetLeuMetGlnIle : 306 !!... :::|||... !||||||! ! !|||! :!!! !|||||| etAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 3158562 : TGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 3158615 307 : PheLeuTyrCysTrpPheGlyAsnGluVal : 316 |||! !|||||||||!:!|||||||||||| PheTyrTyrCysTrpTyrGlyAsnGluVal 3158616 : TTTTACTATTGTTGGTACGGCAACGAAGTG : 3158647 vulgar: CbirOr177 250 316 . KQ414646.1 3158452 3158647 + 134 M 36 108 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158453 3158647 134 + . gene_id 6 ; sequence CbirOr177 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158453 3158647 . + . KQ414646.1 exonerate:protein2genome:local exon 3158453 3158647 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3158453 3158647 134 + . alignment_id 6 ; Query CbirOr177 ; Align 3158453 251 108 ; Align 3158561 288 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr177 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 249 -> 319 Target range: 3160720 -> 3160927 250 : TyrArgPheAlaAspArgValThrAlaValPheThrLeuMetIleLeuLeuGlnPh : 268 !:!|||||||||!!:! !:!!!.!||| !|||!:!:!!! !!!: ! !||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3160721 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3160775 269 : eThrIleSerSerThrValLeuCysLeuSerValTyrGluMetSerLysLysAsnL : 287 | !:!:!!!!!!! !..!:!!|||!!!!:!:!!!:!..!:!!!!!:!!! !!.: eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3160776 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3160832 288 : euLeuSerPheGluPheAlaTrpSerSerLeuTyrLeuGlyCysMetLeuMetGln : 305 !!! !||| ! !!.|||! !! ! !! !:!:!!! ! !!:!!!!! ||| alTyrSerGlnValLeuAlaLeuIlePro---PheMetValSerValPheAlaGln 3160833 : TGTATTCGCAAGTTTTAGCATTGATACCG---TTCATGGTCAGTGTGTTCGCACAG : 3160883 306 : IlePheLeuTyrCysTrpPheGlyAsnGluValThrLeuLys : 319 ||||||! !! !||||||!:!|||||||||..!! !:!!||| IlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys 3160884 : ATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG : 3160927 vulgar: CbirOr177 249 319 . KQ414646.1 3160720 3160927 + 100 M 47 141 G 1 0 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160721 3160927 100 + . gene_id 7 ; sequence CbirOr177 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160721 3160927 . + . KQ414646.1 exonerate:protein2genome:local exon 3160721 3160927 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3160721 3160927 100 + . alignment_id 7 ; Query CbirOr177 ; Align 3160721 250 141 ; Align 3160862 298 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr177 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 249 -> 319 Target range: 3174931 -> 3175138 250 : TyrArgPheAlaAspArgValThrAlaValPheThrLeuMetIleLeuLeuGlnPh : 268 !:!|||||||||!!:! !:!!!.!||| !|||!:!:!!! !!!: ! !||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3174932 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3174986 269 : eThrIleSerSerThrValLeuCysLeuSerValTyrGluMetSerLysLysAsnL : 287 | !:!:!!!!!!! !..!:!!|||!!!!:!:!!!:!..!:!!!!!:!!! !!.: eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3174987 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3175043 288 : euLeuSerPheGluPheAlaTrpSerSerLeuTyrLeuGlyCysMetLeuMetGln : 305 !!! !||| ! !!.|||! !! ! !! !:!:!!! ! !!:!!!!! ||| alTyrSerGlnValLeuAlaLeuIlePro---PheMetValSerValPheAlaGln 3175044 : TGTATTCGCAAGTTTTAGCATTGATACCG---TTCATGGTCAGTGTGTTCGCACAG : 3175094 306 : IlePheLeuTyrCysTrpPheGlyAsnGluValThrLeuLys : 319 ||||||! !! !||||||!:!|||||||||..!! !:!!||| IlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys 3175095 : ATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG : 3175138 vulgar: CbirOr177 249 319 . KQ414646.1 3174931 3175138 + 100 M 47 141 G 1 0 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174932 3175138 100 + . gene_id 8 ; sequence CbirOr177 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174932 3175138 . + . KQ414646.1 exonerate:protein2genome:local exon 3174932 3175138 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3174932 3175138 100 + . alignment_id 8 ; Query CbirOr177 ; Align 3174932 250 141 ; Align 3175073 298 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr188CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 694 Query range: 0 -> 300 Target range: 3149023 -> 3150805 1 : MetHisValLeuAspSerThrPheLysPheLeuThrIleCysGlyCysTrpArgPr : 19 ||| !:!!||| !!.!!|||!!..!.|||||||||||||||||||||||||| MetAlaIleLeuArgProAlaPheAsnIleLeuThrIleCysGlyCysTrpArgPr 3149024 : ATGGCTATCTTACGGCCAGCTTTCAACATACTGACGATCTGCGGATGCTGGAGGCC : 3149078 20 : oAsnSerTrpThrSerSerCysLysSerMetIleTyrArgMetHisThrIlePheI : 38 | !|||!! !!!!!!! !! !.! |||! !:!::!!|||!!:|||: oCysSerCysArgThrThrArgAlaLysAlaAlaTyrIleValTyrThrMetPheV 3149079 : GTGCTCGTGCCGAACGACACGCGCCAAGGCCGCGTACATCGTTTACACGATGTTCG : 3149135 39 : leLeuAlaLeuValAsnThrPheThrLeuSerGlnLeuLeuAspIleIlePheIle : 56 !::!! !|||:!!:!!!:!||| !:!:||||||......::::::|||.!.! ! alValLeuLeuLeuHisSerPheCysIleSerGlnPhePheAsnValIleLeuAsn 3149136 : TGGTACTTTTATTGCACAGCTTCTGCATctcgcaatttttcaacgtgatACTGAAC : 3149189 57 : ValAspAsnAlaAspGluPheThrAspAsnPheTyrMetLeuLeuAlaMetPheVa : 75 :!! !..|||||||||.!.!:!!!:!:!|||||||||!!!:!!||| !!:! LeuArgThrAlaAspGluLeuSerGluSerPheTyrMetPheIleAlaSerValLe 3149190 : TTGAGAACGGCGGACGAGCTGAGCGAGAGTTTCTACATGTTCATCGCGTCCGTTCT : 3149246 76 : lSerCysCysLysMetLeuSerMetLeuIleAsnArgLysAsnIleThrMetLeuI : 94 !||||||||||||!!::!!!!!:!!|||! |||!.! !!:!||| !!!:||| uSerCysCysLysIleValThrLeuLeuThrAsnHisGlySerIleGluIleLeuA 3149247 : GTCCTGCTGCAAGATCGTCACGCTGCTGACGAACCACGGAAGCATCGAGATCCTCC : 3149303 95 : leAsnIleValMetGluLysProCysLysProLeuGluProAspGluMetGluIle : 112 !..! !:!! !|||:!!||||||||||||:!!... !!!!:||| ! ||| rgArgArgLeuGluGluGluProCysLysProValSerAlaGluGluAlaValIle 3149304 : GGAGGAGACTGGAGGAGGAGCCGTGTAAACCTGTGAGCGCCGAGGAGGCTGTCATA : 3149357 113 : TyrHisLysPheAspLysSerAla{Gl} >>>> Target Intron 1 >>>> : 121 ! !|||||||||!:!!:! !{ } 649 bp GlnSerLysPheAspArgAsnIle{Gl}++ + 3149358 : CAGAGTAAATTCGACAGAAACATC{GG}gt.........................a : 3150033 122 : {n}AlaThrThrIleHisTyrAlaIleLeuValGluSerThrCysValCysIleT : 139 {!}:!!..!||||||:!!|||.!!|||||||||||| !||| !:!!|||!!:! +{y}SerValThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCysMetI 3150034 : g{G}TCGGTGACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTGTATGA : 3150087 140 : hrLeuThrSerLeuLeuThrAspTyrArgLysGlnAlaLeuThrPheArgAlaTrp : 157 !|||:!!||||||||| !|||!:!!.!:!!!:!! !|||.!!!:!||||||||| leLeuSerSerLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgAlaTrp 3150088 : TCCTCTCTTCGTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAGCCTGG : 3150141 158 : LeuProTyrAspTyrSerSerProIleLeuPheHisIleThrTyrValHisGlnLe : 176 ||||||!:!||||||||| !|||! !! !!:!:!!|||.!!||||||||||||:! LeuProPheAspTyrSerLeuProThrTyrTyrTyrIleAlaTyrValHisGlnIl 3150142 : CTGCCCTTCGATTACTCTCTGCCAACTTACTATTACATCGCGTACGTTCATCAGAT : 3150198 177 : uIleSerLeuIleValGlySerValLeuHisValAlaCysAspGlyLeuIleCysG : 195 !:!!:!!||||||! ! !|||:!!! !:!!||||||||||||! !:!!||||||| eValAlaLeuIleGlyThrSerLeuSerAsnValAlaCysAspValIleIleCysG 3150199 : CGTCGCGCTGATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCATCTGCG : 3150255 196 : lyPheLeuValHisIleCysCysGlnIleGluIleLeuGluSerArgLeuArgArg : 213 ||!!.||||||||| !||| !!||| |||||||||:!! !|||:!!!:!..! lyLeuLeuValHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMetLysGlu 3150256 : GGTTGCTCGTTCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATGAAGGAG : 3150309 214 : IleValCysGluPro<->AspIleLeuArgAspCysIleLeuGlnHisAsnArgIl : 231 !!:..! |||! ! ! !:!! !! ! !:!!! ! |||:!! !:! MetThrGlnGluGlnArgProAsnIleGlyLysIleValArgPheHisAspTyrLe 3150310 : ATGACGCAGGAACAGAGGCCGAATATCGGGAAAATCGTTCGTTTCCACGATTATCT : 3150366 232 : ePhe{As} >>>> Target Intron 2 >>>> {n}PheAlaPheLeuValA : 239 !!:!{..} 230 bp {.}!:!!.!||| !:!!. uTyr{Gl}++ ++{y}TyrValPheThrMetG 3150367 : TTAC{GG}gt.........................ag{G}TACGTTTTCACGATGC : 3150620 240 : snGluLysPheArgPheThrIleThrIleGlnPheIleValSerThrLeuValVal : 257 !.||||||||||||!::! !||| !:!:|||.!!:!! !||||||||||||||| lnGluLysPheArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuValVal 3150621 : AAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGGTAGTG : 3150674 258 : CysPheAsnLeuTyrGlnLeuThrArgValThrThrSerAsnGluLysTyrMetGl : 276 ||||||! !||||||:!!|||.!!!.!..! !! !!! !!:!...||||||:!!|| CysPheIleLeuTyrGluLeuAlaAsnThrProProIleSerSerLysTyrLeuGl 3150675 : TGTTTCATCCTGTACGAATTGGCGAACACGCCTCCAATCAGCTCCAAGTACCTGCA : 3150731 277 : nLeuValLeuTyrMetCysCysMetLeuThrGlnIlePhePheTyrCysTrpTyrG : 295 |!!!|||||||||:!!..!||||||:!!|||||||||||||||||||||||||||| nPheValLeuTyrLeuAlaCysMetMetThrGlnIlePhePheTyrCysTrpTyrG 3150732 : ATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATCTTCTTTTACTGCTGGTACG : 3150788 296 : lyAsnGluValLysLeu : 300 ||.!.:!!:!!|||||| lyGluGlnLeuLysLeu 3150789 : GCGAGCAGTTGAAACTG : 3150805 vulgar: CbirOr188CTE 0 300 . KQ414646.1 3149023 3150805 + 694 M 120 360 S 0 2 5 0 2 I 0 645 3 0 2 S 1 1 M 97 291 G 0 3 M 14 42 S 0 2 5 0 2 I 0 226 3 0 2 S 1 1 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3149024 3150805 694 + . gene_id 1 ; sequence CbirOr188CTE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3149024 3149385 . + . KQ414646.1 exonerate:protein2genome:local exon 3149024 3149385 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3149386 3149387 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3149386 3150034 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150033 3150034 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150035 3150373 . + . KQ414646.1 exonerate:protein2genome:local exon 3150035 3150373 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150374 3150375 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150374 3150603 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3150602 3150603 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150604 3150805 . + . KQ414646.1 exonerate:protein2genome:local exon 3150604 3150805 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3149024 3150805 694 + . alignment_id 1 ; Query CbirOr188CTE ; Align 3149024 1 360 ; Align 3150036 122 291 ; Align 3150330 219 42 ; Align 3150605 234 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr188CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 583 Query range: 0 -> 299 Target range: 3157321 -> 3158650 1 : MetHisValLeuAspSerThrPheLysPheLeuThrIleCysGlyCysTrpArgPr : 19 ||| !|||||| ! ||||||! !!.|||! !|||! !||||||!::! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 3157322 : ATGAGCGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTATCTGCC : 3157376 20 : oAsnSerTrpThrSerSerCysLysSerMetIleTyrArgMetHisThrIlePheI : 38 |:!!|||||||||!!! !!! !:!!!!! :!:|||!.!!!::!! !:::||| oHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheS 3157377 : CCATTCGTGGACAACACCGTTCGAAAGGTCTTTGTACAATATCTACGGGGtgttct : 3157433 39 : leLeuAlaLeuValAsnThrPheThrLeuSerGlnLeuLeuAspIleIlePheIle : 56 ... |||:::::!!:!.!!..!|||||||||:!!||||||:!! .!!! ! erPheLeuLeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIleAsn 3157434 : cctttcttcttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCAAC : 3157487 57 : ValAspAsnAlaAspGluPheThrAspAsnPheTyrMetLeuLeuAlaMetPheVa : 75 |||!!:!:! !|||!!:|||!::||||||||| ::: ! !!.!:!!|||:! ValGluSerGlnAspAspPheSerAspAsnPheSerValThrAlaValValPheLe 3157488 : GTGGAGAGCCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTTCT : 3157544 76 : lSerCysCysLysMetLeuSerMetLeuIleAsnArgLysAsnIleThrMetLeuI : 94 !!!!!! ! !|||:!:! !! !:!:||||||...||| !|||.!!! !.!.|||| uThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuI 3157545 : CACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGA : 3157601 95 : leAsnIleValMetGluLysProCysLysProLeuGluProAspGluMetGluIle : 112 ||:!!! :!!..!.!.||||||! !..!|||:!!!!: !!!!:|||! |||||| leAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIle 3157602 : TCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATT : 3157655 113 : TyrHisLysPheAspLysSerAla{Gl} >>>> Target Intron 1 >>>> : 121 ||||||!!:|||! !.!!{:!} 107 bp ArgAlaLysPheGluLysIleThr{Gl}++ + 3157656 : AGAGCGAAATTCGAGAAGATCACC{GA}gt.........................a : 3157789 122 : {n}AlaThrThrIleHisTyrAlaIleLeuValGluSerThrCysValCysIleT : 139 {!} !!.!|||||| !||| !! |||::: ::: !!! !||| +{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleT 3157790 : g{A}TGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATAT : 3157843 140 : hrLeuThrSerLeuLeuThrAspTyrArgLysGlnAlaLeuThrPheArgAlaTrp : 157 !:!!! !|||||||||! !|||!:!!!!!!.::! !|||! !|||||||||||| yrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrp 3157844 : ACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGG : 3157897 158 : LeuProTyrAspTyrSerSerProIleLeuPheHisIleThrTyrValHisGlnLe : 176 :!!||||||||||||||| !! !! !:!!||| !:!!|||! !||||||||| IleProTyrAspTyrSerProAlaProIlePheIleLeuThrSerValHisGlnAl 3157898 : ATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTCCGTCCATCAAGC : 3157954 177 : uIleSerLeuIleValGlySerValLeuHisValAlaCysAspGlyLeuIleCysG : 195 !|||:!!! !! :!! !!!!!..!! ! !|||.!! ||| !||| ! !| aIleAlaSerThrIleCysCysThrSerThrValThrValAspThrLeuTyrThrG 3157955 : TATAGCCTCGACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTATACACTG : 3158011 196 : lyPheLeuValHisIleCysCysGlnIleGluIleLeuGluSerArgLeuArgArg : 213 ||!!.|||:!!:!!|||! !||||||.!!|||||||||||| !|||||||||!.! lyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsn 3158012 : GCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAAC : 3158065 214 : IleValCysGlu<->ProAspIleLeuArgAspCysIleLeuGlnHisAsnArgIl : 231 :!! ! !||| !||| !:!!!:!.!.||| !! !!!.|||:!!||||| ValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIl 3158066 : GTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTAT : 3158122 232 : ePhe{As} >>>> Target Intron 2 >>>> {n}PheAlaPheLeuValA : 239 |!:!{.!} 325 bp {.}|||:!! !|||| eTyr{Gl}++ ++{n}PheSerLysLysValA 3158123 : ATAC{CA}gt.........................ag{A}TTTTCGAAAAAGGTGA : 3158471 240 : snGluLysPheArgPheThrIleThrIleGlnPheIleValSerThrLeuValVal : 257 |||||:!!|||!:!.!.! !:!:! ! !|||||| !:!!|||! !! !|||:!! snGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIle 3158472 : ACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATC : 3158525 258 : CysPheAsnLeuTyrGlnLeuThrArgValThrThrSerAsnGluLysTyrMetGl : 276 |||||||||||||||!:!:!!|||!:!:!! ! !! !:!: |||:::::::: CysPheAsnLeuTyrArgMetThrGlnIle---LysMetAspThrLysPheValGl 3158526 : TGCTTCAATCTTTACCGAATGACACAGATC---AAAATGGAcacgaaattcgtcga : 3158579 277 : nLeuValLeuTyrMetCysCysMetLeuThrGlnIlePhePheTyrCysTrpTyrG : 295 :::::!!|||||| ! !|||! :!!||||||||||||!:!||||||||||||| uIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrG 3158580 : aatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGTTGGTACG : 3158636 296 : lyAsnGluValLys : 299 |||||||||||||| lyAsnGluValLys 3158637 : GCAACGAAGTGAAA : 3158650 vulgar: CbirOr188CTE 0 299 . KQ414646.1 3157321 3158650 + 583 M 120 360 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 96 288 G 0 3 M 15 45 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 34 102 G 1 0 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157322 3158650 583 + . gene_id 2 ; sequence CbirOr188CTE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3157322 3157683 . + . KQ414646.1 exonerate:protein2genome:local exon 3157322 3157683 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3157684 3157685 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3157684 3157790 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3157789 3157790 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3157791 3158129 . + . KQ414646.1 exonerate:protein2genome:local exon 3157791 3158129 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158130 3158131 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158130 3158454 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3158453 3158454 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158455 3158650 . + . KQ414646.1 exonerate:protein2genome:local exon 3158455 3158650 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3157322 3158650 583 + . alignment_id 2 ; Query CbirOr188CTE ; Align 3157322 1 360 ; Align 3157792 122 288 ; Align 3158083 218 45 ; Align 3158456 234 102 ; Align 3158558 269 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr188CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 560 Query range: 0 -> 300 Target range: 3154921 -> 3156009 1 : MetHisValLeuAspSerThrPheLysPheLeuThrIleCysGlyCysTrpArgPr : 19 ||||||:!!|||.!.!.! !.!.:!!|||! !.!!!!:|||||| !|||! !|| MetHisLeuLeuGlnLysGlnLeuGlnPheCysAlaMetCysGlyLeuTrpProPr 3154922 : ATGCATCTACTGCAAAAACAACTGCAATTTTGCGCAATGTGCGGTCTCTGGCCACC : 3154976 20 : oAsnSerTrpThrSerSerCysLysSerMetIleTyrArgMetHisThrIlePheI : 38 | |||! .!! !! !! !|||!!!.!. !||| !:!: !:!! !:!! oProSerSerAlaProLeuPheLysArgPheAlaTyrSerValPheSerTrpTyrT 3154977 : GCCATCATCAGCTCCGCTGTTTAAAAGATTCGCCTACTCTGTATTCTCGTGGTACA : 3155033 39 : leLeuAlaLeuValAsnThrPheThrLeuSerGlnLeuLeuAspIleIlePheIle : 56 ||| !|||||| !!! ! ..!!!!||||||:!!:!!|||:!!||| ! ! ! hrLeuIleLeuValTyrIleThrValPheSerGlnIleMetAspLeuIleValAsn 3155034 : CGTTAATACTGGTGTACATCACGGTTTTCAGCCAAATCATGGACCTAATCGTGAAC : 3155087 57 : ValAspAsnAlaAspGluPheThrAspAsnPheTyrMetLeuLeuAlaMetPheVa : 75 ||| !.! !|||||||||!:!||||||||||||!!:||||||||| :! ValThrThrGlnAspGluPheSerAspAsnPheTyrIleLeuLeuAlaCysAlaIl 3155088 : GTGACGACTCAAGACGAGTTTAGCGACAATTTTTACATACTTCTGGCGTGTGCGAT : 3155144 76 : lSerCysCysLysMetLeuSerMetLeuIleAsnArgLysAsnIleThrMetLeuI : 94 !|||! ||| ! !|||:!!|||! !!:!|||||||||:!! ! :!!| eSerLeuGlnLysAlaGlnSerValLeuAsnSerArgLysAsnValHisArgMetI 3155145 : ATCCTTGCAGAAAGCACAGAGTGTGTTAAACAGTCGTAAGAATGTCCACCGTATGA : 3155201 95 : leAsnIleValMetGluLysProCysLysProLeuGluProAspGluMetGluIle : 112 ||:!!:!!:!!! ...:!!|||! ! ! ||| ! !!!:|||!!:|||||| leAspLeuLeuAsnSerGluProPheHisProGluCysLysGluGluIleGluIle 3155202 : TCGATCTTTTGAACAGCGAACCTTTTCATCCAGAATGTAAGGAGGAAATCGAGATA : 3155255 113 : TyrHisLysPheAspLysSerAla{Gl} >>>> Target Intron 1 >>>> : 121 !!:!.!!..!:!! !|||{::} 119 bp ArgSerArgIleSerGluHisAla{Ar}++ + 3155256 : AGAAGTAGGATCTCCGAGCACGCC{AG}gt.........................a : 3155401 122 : {n}AlaThrThrIleHisTyrAlaIleLeuValGluSerThrCysValCysIleT : 139 {!} !!:!:!!! !:!!|||||||||||||||||||||||| :!! !:!:: +{g}ArgSerSerThrTyrTyrAlaIleLeuValGluSerThrValMetThrLeuS 3155402 : g{A}AGAAGCTCAACCTATTACGCGATTCTGGTCGAATCGACGGTGATGACTTTGT : 3155455 140 : hrLeuThrSerLeuLeuThrAspTyrArgLysGlnAlaLeuThrPheArgAlaTrp : 157 !!!!! !:!!||||||! ! ..!..!!:: !!||| !!!:!||| !||| erPheGlyAlaLeuLeuLysPro---GluSerArgProLeuProTyrArgIleTrp 3155456 : CTTTCGGTGCACTGTTGAAACCA---GAATCACGTCCTTTACCGTATCGAATTTGG : 3155506 158 : LeuProTyrAspTyrSerSerProIleLeuPheHisIleThrTyrValHisGlnLe : 176 ||||||! !:!!|||!!! !! !||| !!:! ! ! !|||..!! !|||! LeuProCysAsnTyrThrProLeuIleThrTyrCysSerIleTyrThrLeuGlnCy 3155507 : CTACCTTGCAATTACACCCCGTTAATTACTTACTGTTCGATTTACACTCTCCAATG : 3155563 177 : uIleSerLeuIleValGlySerValLeuHisValAlaCysAspGlyLeuIleCysG : 195 !:!::!!||| !:!!.!!:!!:!!:!!|||||||||||||||.!!|||||||||| sValAlaLeuAlaLeuSerAlaMetMetHisValAlaCysAspSerLeuIleCysG 3155564 : TGTGGCACTCGCTCTAAGCGCTATGATGCACGTCGCCTGCGACAGTTTGATCTGCG : 3155620 196 : lyPheLeuValHisIleCysCysGlnIleGluIleLeuGluSerArgLeuArgArg : 213 ||.!.|||:!!|||! !! ! !!|||||||||||||||! !!!||||||!:: lyLeuLeuLeuHisThrTyrGlyGlnIleGluIleLeuGlyCysArgLeuLysThr 3155621 : GCCTGCTGTTACACACTTACGGCCAGATCGAGATCCTCGGTTGTCGTCTGAaaacg : 3155674 214 : Ile<->ValCysGluProAspIleLeuArgAspCysIleLeuGlnHisAsnArgIl : 231 ||| ||| ! ! ! !!:! |||:!!! ! ! :!!|||! !|| IleLysGluAsnGluSerLysThrSerLysLeuCysValArgTyrAsnAsnLeuIl 3155675 : ataaaagaaaacgagagtAAGACGTCCAAGTTGTGCGTTCGTTACAACAACCTTAT : 3155731 232 : ePhe{As} >>>> Target Intron 2 >>>> {n}PheAlaPheLeuValA : 239 |!:!{..} 69 bp {.}|||.!! !:!!:!!| eTyr{Ar}++ ++{g}PheThrAlaMetIleA 3155732 : CTAT{CG}gt.........................ag{A}TTCACCGCTATGATAA : 3155824 240 : snGluLysPheArgPheThrIleThrIleGlnPheIleValSerThrLeuValVal : 257 |||||:!!|||..!.!..!!||| !! !|||||| ||||||||||||!.!:!! snGluGlnPheGluMetAlaIlePheThrGlnPheAlaValSerThrLeuAlaIle 3155825 : ACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGTGAGTACGCTGGCGATA : 3155878 258 : CysPheAsnLeuTyrGlnLeuThrArgValThrThrSerAsnGluLysTyrMetGl : 276 |||||||||||||||! !|||||| !! ! !..!!!! !:!|||:!!:! CysPheAsnLeuTyrLeuLeuThrGlySerAspValThrProIleArgTyrValGl 3155879 : TGCTTCAATCTTTACCTATTAACAGGATCAGATGTGACGCCGATTAGGTATGTGGA : 3155935 277 : nLeuValLeuTyrMetCysCysMetLeuThrGlnIlePhePheTyrCysTrpTyrG : 295 !:!!:!!:!!|||! !!|||||||||||||||||||||.!!||||||||||||| uIleIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysTrpTyrG 3155936 : AATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTGGTACG : 3155992 296 : lyAsnGluValLysLeu : 300 ||||||||||||||||| lyAsnGluValLysLeu 3155993 : GGAACGAAGTTAAGCTG : 3156009 vulgar: CbirOr188CTE 0 300 . KQ414646.1 3154921 3156009 + 560 M 120 360 S 0 2 5 0 2 I 0 115 3 0 2 S 1 1 M 25 75 G 1 0 M 67 201 G 0 3 M 18 54 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3154922 3156009 560 + . gene_id 3 ; sequence CbirOr188CTE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3154922 3155283 . + . KQ414646.1 exonerate:protein2genome:local exon 3154922 3155283 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3155284 3155285 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3155284 3155402 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3155401 3155402 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3155403 3155738 . + . KQ414646.1 exonerate:protein2genome:local exon 3155403 3155738 . + . insertions 3 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3155739 3155740 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3155739 3155807 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3155806 3155807 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3155808 3156009 . + . KQ414646.1 exonerate:protein2genome:local exon 3155808 3156009 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3154922 3156009 560 + . alignment_id 3 ; Query CbirOr188CTE ; Align 3154922 1 360 ; Align 3155404 122 75 ; Align 3155479 148 201 ; Align 3155683 215 54 ; Align 3155809 234 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr188CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 550 Query range: 7 -> 299 Target range: 3179634 -> 3180661 8 : PheLysPheLeuThrIleCysGlyCysTrpArgProAsnSerTrpThrSerSerCy : 26 ||| ||||||::!||| !!|||||||||||||||! !||||||:!!|||!!!! PheThrPheLeuSerIleGlyGlyCysTrpArgProIleSerTrpSerSerThrTy 3179635 : tttacatttctcaGTATCGGTGGCTGTTGGAGACCGATCTCGTGGTCTTCGACGTA : 3179689 27 : sLysSerMetIleTyrArgMetHisThrIlePheIleLeuAlaLeuValAsnThrP : 45 !|||!!! ||||||!.!:!::!!|||:!!.!!:!!||| !:!!! ! !!.!| rLysThrAlaIleTyrAsnValTyrThrValLeuValLeuIleMetGlyValAsnP 3179690 : CAAAACGGCAATCTACAATGTCTACACCGTTCTCGTATTAATCATGGGTGTTAATT : 3179746 46 : heThrLeuSerGlnLeuLeuAspIleIlePheIleValAspAsnAlaAspGluPhe : 63 ||! !:!!|||||| !!!! !! !!!:|||! !:!!!!:!.!!.!.!.!!:||| heMetValSerGln---PheGlySerMetPheThrIleGluThrValGlnAspPhe 3179747 : TCATGGTTTCGCAA---TTTGGCAGCATGTTCACCATAGAAACCGTACAAGATTTC : 3179797 64 : ThrAspAsnPheTyrMetLeuLeuAlaMetPheValSerCysCysLysMetLeuSe : 82 ..!||| ! !|||!!:! !:!!:!!:!!||||||.!!|||||||||:!!! !!: ValAspLeuThrTyrIleCysValSerValPheValGlyCysCysLysLeuSerAs 3179798 : GTCGACCTTACTTACATATGCGTCTCCGTGTTCGTCGGTTGTTGCAAGCTGTCAAA : 3179854 83 : rMetLeuIleAsnArgLysAsnIleThrMetLeuIleAsnIleValMetGluLysP : 101 !:!!:!!.!! !!||||||:!!|||! ! |||!!:|||||| !!|||||| ! | nValValPheTyrArgLysAspIleIleAspLeuMetAsnIlePheMetGluAspP 3179855 : CGTGGTGTTCTATCGGAAAGATATCATAGACCTGATGAACATCTTCATGGAGGATC : 3179911 102 : roCysLysProLeuGluProAspGluMetGluIleTyrHisLysPheAspLysSer : 119 ||||| ! !! !.!. !!!:||| :!!:!: ! !:!!:!||| ! ..! roCysAlaCysSerAsnLysGluGluAspGlnValGlnAlaArgTyrAspAspGln 3179912 : CTTGTGCATGTTCGAACAAGGAGGAGGACCAGGTGCAAGCGAGATACGACGATCAA : 3179965 120 : Ala{Gl} >>>> Target Intron 1 >>>> {n}AlaThrThrIleHisTy : 127 !{!:} 77 bp {!} !!.!.!!:!!...|| Leu{Ar}++ ++{g}LysAsnAlaValArgTy 3179966 : TTA{CG}gt.........................ag{G}AAAAACGCTGTCAGATA : 3180066 128 : rAlaIleLeuValGluSerThrCysValCysIleThrLeuThrSerLeuLeuThrA : 146 |.!!!!::!!||||||! !:!! !!.!! ! !! !|||!.!||||||:!!|||: rThrMetValValGluMetSerValAlaSerThrIleLeuAsnSerLeuValThrA 3180067 : CACAATGGTAGTCGAGATGTCGGTCGCCTCGACTATTTTAAACTCGTTAGTGACCA : 3180123 147 : spTyrArgLysGlnAlaLeuThrPheArgAlaTrpLeuProTyrAspTyrSerSer : 164 !!!:!!:! ! !||||||!:!|||!.!|||!!!||||||||||||!!!!!! snPheGlnHisGlyArgLeuThrTyrArgGlyTrpPheProTyrAspTyrThrThr 3180124 : ACTTTCAACACGGCAGACTAACCTACAGAGGCTGGTTCCCTTACGATTACACGACC : 3180177 165 : ProIleLeuPheHisIleThrTyrValHisGlnLeuIleSerLeuIleValGlySe : 183 !!:!!||||||! :!:||||||!.!! ||||||:!!!!!:!!:!!||| !|| AlaValLeuPheProLeuThrTyrAlaLeuGlnLeuLeuCysValLeuValTyrSe 3180178 : GCCGTACTTTTTCCATTGACATACGCTCTGCAGCTATTATGCGTGCTCGTATATTC : 3180234 184 : rValLeuHisValAlaCysAspGlyLeuIleCysGlyPheLeuValHisIleCysC : 202 | !:!!||||||:!! ||| !|||.!!! !|||.!.|||:!!!!.:!:|||| rTrpIleHisValSerValAspIleLeuPhePheGlyLeuLeuMetGlnLeuCysC 3180235 : CTGGATCCACGTTTCAGTGGATATTCTCTTCTTCGGACTGTTGATGCAACTGTGCT : 3180291 203 : ysGlnIleGluIleLeuGluSerArgLeuArgArgIleValCysGlu<->ProAsp : 219 |||||.!!!!:|||||| ||||||...!!!!!!|||..!! ||| !! ! ysGlnPheAspIleLeuPheSerArgPheSerSerIleThrSerGluAsnLysGly 3180292 : GTCAATTCGAcattctcttctctcgtttcAGTAGCATAACGTCGGAGAACAAGGGT : 3180345 220 : IleLeuArgAspCysIleLeuGlnHisAsnArgIlePhe{As} >>>> Target : 233 :!!|||||| ||||||! !!!.|||:!!||||||!:!{..} 7 ValLeuArgArgCysIleArgHisHisAspArgIleTyr{Ar}++ 3180346 : GTTTTACGAAGATGCATTCGTCATCACGACAGAATTTAC{CG}gt........... : 3180391 234 : Intron 2 >>>> {n}PheAlaPheLeuValAsnGluLysPheArgPheThrI : 246 4 bp {!}!!.||| :!!:!!|||!!:!...!.!:!.!.|||! ++{g}LeuAlaGluIleMetAsnAspSerLeuGlnLeuThrM 3180392 : ..............ag{T}TTAGCTGAAATAATGAACGACAGTCTACAGCTGACGA : 3180500 247 : leThrIleGlnPheIleValSerThrLeuValValCysPheAsnLeuTyrGlnLeu : 264 !: ! !||||||.!!! !||| !:!!|||:!!|||.!.!:!||| !|||||| etPheAlaGlnPhePheGlySerPheMetValIleCysLeuSerLeuIleGlnLeu 3180501 : TGTTCGCCCAGTTTTTCGGAAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTG : 3180554 265 : ThrArgValThrThrSerAsnGluLysTyrMetGlnLeuValLeuTyrMetCysCy : 283 !!.!!.! !! ! !!:! :!!!:!:!: ! !:::...|||::: LeuAsnAlaAspIleLeuSerThrGluPheLeuAlaThrIlePheTyrLeuSerSe 3180555 : TTAAACGCAGATATTCTCAGCACCGAATTCTTAGCGACGAtattttatctgagctc : 3180611 284 : sMetLeuThrGlnIlePhePheTyrCysTrpTyrGlyAsnGluValLys : 299 :::||| !|||! !|||.!!||||||||||||||||||||||||!:! rIleLeuLeuGlnSerPheLeuTyrCysTrpTyrGlyAsnGluValArg 3180612 : gatACTGCTGCAGAGCTTTCTTTACTGTTGGTACGGAAACGAAGTGAGA : 3180661 vulgar: CbirOr188CTE 7 299 . KQ414646.1 3179634 3180661 + 550 M 42 126 G 1 0 M 70 210 S 0 2 5 0 2 I 0 73 3 0 2 S 1 1 M 96 288 G 0 3 M 15 45 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3179635 3180661 550 + . gene_id 4 ; sequence CbirOr188CTE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3179635 3179972 . + . KQ414646.1 exonerate:protein2genome:local exon 3179635 3179972 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3179973 3179974 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3179973 3180049 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3180048 3180049 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3180050 3180388 . + . KQ414646.1 exonerate:protein2genome:local exon 3180050 3180388 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3180389 3180390 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3180389 3180462 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3180461 3180462 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3180463 3180661 . + . KQ414646.1 exonerate:protein2genome:local exon 3180463 3180661 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3179635 3180661 550 + . alignment_id 4 ; Query CbirOr188CTE ; Align 3179635 8 126 ; Align 3179761 51 210 ; Align 3180051 122 288 ; Align 3180342 218 45 ; Align 3180464 234 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr188CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 397 Query range: 0 -> 236 Target range: 3159620 -> 3160407 1 : MetHisValLeuAspSerThrPheLysPheLeuThrIleCysGlyCysTrpArgPr : 19 ||||||..!|||.!.! !:!!!!.||| !|||||||||||||||! ! ||||| MetHisThrLeuGlnLeuSerLeuLysThrLeuThrIleCysGlyTyrIleArgPr 3159621 : ATGCACACGTTGCAATTGTCGTTGAAAACTTTGACGATTTGCGGCTACATAAGGCC : 3159675 20 : oAsnSerTrpThrSerSerCysLysSerMetIleTyrArgMetHisThrIlePheI : 38 |!..||||||! !||| !! ! !!.!:!::!!|||!.!:!:||||||:!! !: oThrSerTrpLysSerProGlyLeuLysLeuLeuTyrAsnValHisThrValThrV 3159676 : AACATCGTGGAAGTCACCGGGGCTAAAGCTTCTCTATAACGTACACACGGTTACTG : 3159732 39 : leLeuAlaLeuValAsnThrPheThrLeuSerGlnLeuLeuAspIleIlePheIle : 56 !!:!!!.!:!!:!!!:!|||||| !:!!:!!|||:!!||||||||||||||| alValValValLeuSerThrPhePheValAlaGlnIleLeuAspIleIlePheAsn 3159733 : TAGTGGTAGTTCTTAGCACGTTTTTCGTCGCCCAGATATTggacattattttcaac : 3159786 57 : ValAspAsnAlaAspGluPheThrAspAsnPheTyrMetLeuLeuAlaMetPheVa : 75 |||!!:||| !|||||||||!:!|||||||||! !!!: !! !..!:!!.!. ValGluAsnGlnAspGluPheSerAspAsnPheCysIleThrCysCysValMetAs 3159787 : gtgGAGAATCAAGACGAGTTTAGCGACAATTTCTGCATAACGTGCTGCGTGATGAA : 3159843 76 : lSerCysCysLysMetLeuSerMetLeuIleAsnArgLysAsnIleThrMetLeuI : 94 !||| ! ! |||:!!! !|||:!!||||||...|||:!!! ||| !! |||| nSerLeuGlyLysLeuTyrSerLeuLeuIleGlyArgGluMetIleGlnAsnLeuI 3159844 : CAGCCTTGGAAAGTTGTACAGCTTGCTGATAGGACGAGAAATGATCCAAAATTTAA : 3159900 95 : leAsnIleValMetGluLysProCysLysProLeuGluProAspGluMetGluIle : 112 ||:!! :!!...... ! ||| !!:!||||||!!: !! |||! |||||| leAspSerLeuGlnSerAspProLeuArgProLeuAspGluValGluAsnGluIle 3159901 : TAGACTCGCTACAAAGTGACCCTCTTAGGCCGTTGGACGAAGTGGAGAATGAAATT : 3159954 113 : TyrHisLysPheAspLysSerAla{Gl} >>>> Target Intron 1 >>>> : 121 !:! !!!:|||!!! !{:!} 73 bp ArgLeuArgHisGluLysThrIle{Gl}++ + 3159955 : CGATTGAGACACGAGAAGACAATC{GA}gt.........................a : 3160054 122 : {n}AlaThrThrIleHisTyrAlaIleLeuValGluSerThrCysValCysIleT : 139 {!} ! !:!!!!: !|||.!!:!!! !..!! ! !!:!.....! !!:!! +{u}LysLeuSerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValT 3160055 : g{A}AAGCTCTCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTAT : 3160108 140 : hrLeuThrSerLeuLeuThrAspTyrArgLysGlnAlaLeuThrPheArgAlaTrp : 157 !:!! !||| !:!!|||! !:!|||! ::!! !||| !!.!!|||!.!||| rpMetLeuSerAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrp 3160109 : GGATGTTGTCGGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGG : 3160162 158 : LeuProTyrAspTyrSerSerProIle<->LeuPheHisIleThrTyrValHisGl : 175 ||||||!:!||||||!!!:!! !!:!: :!!||| !:!!||||||!.!:!!|| LeuProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGl 3160163 : TTACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCA : 3160219 176 : nLeuIleSerLeuIleValGlySerValLeuHisValAlaCysAspGlyLeuIleC : 194 |!!!:!!!!!|||||| !! !!!!..! ! !:!!!.! !|||..!|||.!! nPheValThrLeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheS 3160220 : GTTTGTAACTCTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCA : 3160276 195 : ysGlyPheLeuValHisIleCysCysGlnIleGluIleLeuGluSerArgLeuArg : 212 !!|||.!.|||:!!||||||! !||||||.!!|||||||||:!! !||||||!:! erGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLys 3160277 : GCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAG : 3160330 213 : ArgIleValCysGluProAspIle<->LeuArgAspCysIleLeuGlnHisAsnAr : 230 !!!||| ! !!!: !!!: ! !!:!.!.||| !!!!!!.||| !!|| SerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrAr 3160331 : AGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCG : 3160387 231 : gIlePheAsnPheAlaPhe : 236 ||||!:!!!.|||...::: gIleTyrLysPheValTyr 3160388 : CATATACAAGTTTgtctac : 3160407 vulgar: CbirOr188CTE 0 236 . KQ414646.1 3159620 3160407 + 397 M 120 360 S 0 2 5 0 2 I 0 69 3 0 2 S 1 1 M 45 135 G 0 3 M 54 162 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3159621 3160407 397 + . gene_id 5 ; sequence CbirOr188CTE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3159621 3159982 . + . KQ414646.1 exonerate:protein2genome:local exon 3159621 3159982 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3159983 3159984 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3159983 3160055 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3160054 3160055 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3160056 3160407 . + . KQ414646.1 exonerate:protein2genome:local exon 3160056 3160407 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3159621 3160407 397 + . alignment_id 5 ; Query CbirOr188CTE ; Align 3159621 1 360 ; Align 3160057 122 135 ; Align 3160195 167 162 ; Align 3160360 221 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr188CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 381 Query range: 137 -> 299 Target range: 3164367 -> 3165178 138 : IleThrLeuThrSerLeuLeuThrAspTyrArgLysGlnAlaLeuThrPheArgAl : 156 ||| !:!!! !|||||||||||||||!:!!!!!..::! !|||! !|||||||| IleTyrValArgSerLeuLeuThrAspPheSerSerArgLysLeuMetPheArgAl 3164368 : ATATACGTGAGATCGCTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGC : 3164422 157 : aTrpLeuProTyrAspTyrSerSerProIleLeuPheHisIleThrTyrValHisG : 175 |||||||||||||||||||||| !! !! !:!!||| !:!!|||!:!||||||| aTrpLeuProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisG 3164423 : ATGGTTACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATC : 3164479 176 : lnLeuIleSerLeuIleValGlySerValLeuHisValAlaCysAspGlyLeuIle : 193 || !|||:!! !! :!! !!!!!..!! ! !|||.!! |||..!||| ! lnAlaIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyr 3164480 : AAGCTATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATAC : 3164533 194 : CysGlyPheLeuValHisIleCysCysGlnIleGluIleLeuGluSerArgLeuAr : 212 !|||!!.|||:!!:!!|||! !||||||.!!|||||||||||| !|||||||| ThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuAr 3164534 : ACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAG : 3164590 213 : gArgIleValCysGlu<->ProAspIleLeuArgAspCysIleLeuGlnHisAsnA : 230 |!.!:!! ! !||| !||| !:!!!:!.!.||| !! !!!.|||:!!| gAsnValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspA 3164591 : GAACGTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATC : 3164647 231 : rgIlePhe{As} >>>> Target Intron 1 >>>> {n}PheAlaPheLeu : 237 |||||!:!{.!} 325 bp {.}|||:!! ! rgIleTyr{Gl}++ ++{n}PheSerLysLys 3164648 : GTATATAC{CA}gt.........................ag{A}TTTTCGAAAAAG : 3164993 238 : ValAsnGluLysPheArgPheThrIleThrIleGlnPheIleValSerThrLeuVa : 256 |||||||||:!!|||!:!.!.! !:!:! ! !|||||| !:!!|||! !! !|| ValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerVa 3164994 : GTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGT : 3165050 257 : lValCysPheAsnLeuTyrGlnLeuThrArgValThrThrSerAsnGluLysTyrM : 275 |:!!|||||||||||||||!:!:!!|||!:!:!! ! !! !:!: |||:::: lIleCysPheAsnLeuTyrArgMetThrGlnIle---LysMetAspThrLysPheV 3165051 : GATCTGCTTCAATCTTTACCGAATGACACAGATC---AAAATGGAcacgaaattcg : 3165104 276 : etGlnLeuValLeuTyrMetCysCysMetLeuThrGlnIlePhePheTyrCysTrp : 293 :::::::::!!|||||| ! !|||! :!!||||||||||||!:!||||||||| alGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrp 3165105 : tcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGG : 3165158 294 : TyrGlyAsnGluValLys : 299 |||||||||||||||||| TyrGlyAsnGluValLys 3165159 : TACGGCAACGAAGTGAAA : 3165178 vulgar: CbirOr188CTE 137 299 . KQ414646.1 3164367 3165178 + 381 M 80 240 G 0 3 M 15 45 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 34 102 G 1 0 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164368 3165178 381 + . gene_id 6 ; sequence CbirOr188CTE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3164368 3164657 . + . KQ414646.1 exonerate:protein2genome:local exon 3164368 3164657 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164658 3164659 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164658 3164982 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3164981 3164982 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164983 3165178 . + . KQ414646.1 exonerate:protein2genome:local exon 3164983 3165178 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3164368 3165178 381 + . alignment_id 6 ; Query CbirOr188CTE ; Align 3164368 138 240 ; Align 3164611 218 45 ; Align 3164984 234 102 ; Align 3165086 269 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr188CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 250 Query range: 126 -> 297 Target range: 3153129 -> 3153645 127 : TyrAlaIleLeuValGluSerThrCysValCysIleThrLeuThrSerLeuLeuTh : 145 |||.!! !!!!:!!!!:! ! ! ||| !:!! !:!!||||||! !!!!|| TyrThrTyrPheLeuAspIleLeuValValValLeuTrpIleThrSerTyrPheTh 3153130 : TACACATATTTCCTGGACATCTTGGTAGTCGTTTTATGGATAACATCGTACTTCAC : 3153184 146 : rAspTyrArgLysGlnAlaLeuThrPheArgAlaTrpLeuProTyrAspTyrSerS : 164 ||||||||||:::::: ... ||||||..!||||||||||||||| !!!!! rAspTyrArgArgArgLysPheLysPheArgValTrpLeuProTyrAspThrThrT 3153185 : GGACTACAGGcgcagaaaattcaaatttcgcgtCTGGTTACCTTACGACACTACTA : 3153241 165 : erProIleLeuPheHisIleThrTyrValHisGlnLeuIleSerLeuIleValGly : 182 !!! ! !:!!||| !:!:! !||| !!!.|||:!!:!!!!! ! !.!! hrGlnProValPheThrLeuIleTyrCysGlnGlnIleValCysThrTrpTyrSer 3153242 : CACAACCTGTCTTCACTCTGATCTACTGTCAACAGATCGTCTGCACGTGGTACAGC : 3153295 183 : SerValLeuHisValAlaCysAspGlyLeuIleCysGlyPheLeuValHisIleCy : 201 ! !:!!:!!||| !|||||| !!|||.!! !!|||.!.:!!:!!!!.||||| ValAsnIleAsnValIleCysAspCysLeuPheSerGlyLeuMetIleGlnIleCy 3153296 : GTGAATATTAACGTCATTTGCGACTGCCTGTTCAGCGGCCTGATGATACAGATTTG : 3153352 202 : sCysGlnIleGluIleLeuGluSerArgLeuArgArgIleValCysGluProAspI : 220 |! :!!..!! :!!:!! !!! !! !|||!.! !||| !! !! | sSerIleLeuArgLysMetLysProThrArgArgAsnCysValLeuValThrIleI 3153353 : CTCAATCTTACGGAAGATGAAACCTACTCGGCGAAACTGTGTGCTCGTCACCATAA : 3153409 221 : le<-><->LeuArgAspCysIleLeuGlnHisAsnArgIlePheAsnPheAlaPhe : 236 || !!!!.!.! ! ::: ...||| !! !!.||| leArgTyrThrSerGlnSerArgGlnGluIleLysArgTyrVal***LeuAlaGln 3153410 : TCAGATATACAAGCCAGTCTCGacaagaaattaaacgatacgTTTGATTGGCGCAA : 3153463 237 : LeuValAsnGluLysPheArgPheThrIleThrIleGlnPheIleValSerThrLe : 255 :!!||||||||||||.!! !! !..! !:!||||||||| :!!|||||| IleValAsnGluLysLeuGlyAsnValSerSerIleGlnPheAlaIleSerThrGl 3153464 : ATAGTGAACGAGAAGCTTGGAAATGTCTCGAGTATACAGTTCGCGATAAGCACAGG : 3153520 256 : uValValCysPheAsnLeuTyrGlnLeuThrArgValThrThrSerAsnGluLysT : 274 !!.!:!!|||||||||||||||!:!:!!:!! |||! ! ! !..! !|||! yAlaIleCysPheAsnLeuTyrArgMetSer---ValIleGluLeuGlyProLysP 3153521 : AGCGATATGCTTCAATCTCTATCGAATGTCG---GTGATAGAACTCGGTCCAAAGT : 3153574 275 : yrMetGlnLeuValLeuTyrMetCysCysMetLeuThrGlnIlePhePheTyrCys : 292 :!:!!:!! !:!! ! !! |||:!:|||.!!|||||||||!:!|||||| heValGluAlaLeuThrIleThrValCysLeuLeuAlaGlnIlePheTyrTyrCys 3153575 : TTGTGGAAGCGTTAACTATCACAGTATGCTTACTCGCGCAGATATTTTACTATTGT : 3153628 293 : TrpTyrGlyAsnGlu : 297 ||||||||||||::: TrpTyrGlyAsnAsp 3153629 : TGGTAcggtaacgat : 3153645 vulgar: CbirOr188CTE 126 297 . KQ414646.1 3153129 3153645 + 250 M 94 282 G 0 6 M 45 135 G 1 0 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153130 3153645 250 + . gene_id 7 ; sequence CbirOr188CTE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153130 3153645 . + . KQ414646.1 exonerate:protein2genome:local exon 3153130 3153645 . + . insertions 6 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3153130 3153645 250 + . alignment_id 7 ; Query CbirOr188CTE ; Align 3153130 127 282 ; Align 3153418 221 135 ; Align 3153553 267 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr188CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 232 Query range: 0 -> 118 Target range: 3163849 -> 3164203 1 : MetHisValLeuAspSerThrPheLysPheLeuThrIleCysGlyCysTrpArgPr : 19 ||| !|||||| ! ||||||! !!.|||! !|||! !||||||!::! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 3163850 : ATGAGTGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTACCTGCC : 3163904 20 : oAsnSerTrpThrSerSerCysLysSerMetIleTyrArgMetHisThrIlePheI : 38 |:!!|||||||||!!! !!! !:!!!!! :!:|||!.!!!::!! !:!:||| oHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheT 3163905 : CCATTCGTGGACAACGCCGTTCGAAAGGTCTTTGTACAATATCTACGGGGTGTTCT : 3163961 39 : leLeuAlaLeuValAsnThrPheThrLeuSerGlnLeuLeuAspIleIlePheIle : 56 !||| !|||:!!!:!!:!.!!.!!|||||||||:!!||||||:!! .!!! ! yrLeuLeuLeuLeuSerSerLeuAlaLeuSerGlnIleLeuAspValAlaIleAsn 3163962 : ACTTGCTTCTTCTAAGCAGCCTCGCCCTCTCGCAAATATTAGACGTAGCGATCAAC : 3164015 57 : ValAspAsnAlaAspGluPheThrAspAsnPheTyrMetLeuLeuAlaMetPheVa : 75 |||!!:!:! !|||!!:|||:::||||||||| ::: !!.!:!!|||:! ValGluSerGlnAspAspPheSerAspAsnPheSerIleThrAlaValValPheLe 3164016 : GTGGAGAGCCAGGATGACTTCagtgacaatttttctatcaccGCTGTGGTGTTTCT : 3164072 76 : lSerCysCysLysMetLeuSerMetLeuIleAsnArgLysAsnIleThrMetLeuI : 94 !!!!!! ! !|||:!:! !! !:!:||||||...||| !|||.!!! !.!.|||| uThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuI 3164073 : CACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGA : 3164129 95 : leAsnIleValMetGluLysProCysLysProLeuGluProAspGluMetGluIle : 112 ||:!!! :!!..!.!.||||||! !..!|||:!!!!: !!!!:|||! |||||| leAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIle 3164130 : TCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATT : 3164183 113 : TyrHisLysPheAspLys : 118 ||||||!!:||| ArgAlaLysPheGluLys 3164184 : AGAGCGAAATTCGAGAAG : 3164203 vulgar: CbirOr188CTE 0 118 . KQ414646.1 3163849 3164203 + 232 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3163850 3164203 232 + . gene_id 8 ; sequence CbirOr188CTE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3163850 3164203 . + . KQ414646.1 exonerate:protein2genome:local exon 3163850 3164203 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3163850 3164203 232 + . alignment_id 8 ; Query CbirOr188CTE ; Align 3163850 1 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr188CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 228 -> 300 Target range: 3178372 -> 3178588 229 : AsnArgIlePheAsnPheAlaPheLeuValAsnGluLysPheArgPheThrIleTh : 247 ||| ||| ...|||.!! !|||||| !|||!:!!:!! !||| AsnPheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePh 3178373 : aatttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTT : 3178427 248 : rIleGlnPheIleValSerThrLeuValValCysPheAsnLeuTyrGlnLeuThrA : 266 !:!:|||||| !:!!|||:!! !|||:!!|||!!.!:!:!!|||:!!:!!:!!! eLeuGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerT 3178428 : CCTGCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGA : 3178484 267 : rgValThrThrSerAsnGluLysTyrMetGlnLeuValLeuTyrMetCysCysMet : 284 !:!!!.! !!! !!:! !!!.!:!:!: !! !!.!! !|||:!:||||||||| hrIleAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMet 3178485 : CGATTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATG : 3178538 285 : LeuThrGlnIlePhePheTyrCysTrpTyrGlyAsnGluValLysLeu : 300 |||||||||:!:!:!!!.|||||||||!:!||||||||||||! !||| LeuThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeu 3178539 : CTCACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTG : 3178588 vulgar: CbirOr188CTE 228 300 . KQ414646.1 3178372 3178588 + 174 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178373 3178588 174 + . gene_id 9 ; sequence CbirOr188CTE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178373 3178588 . + . KQ414646.1 exonerate:protein2genome:local exon 3178373 3178588 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178373 3178588 174 + . alignment_id 9 ; Query CbirOr188CTE ; Align 3178373 229 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr188CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 163 Query range: 231 -> 300 Target range: 3160720 -> 3160924 232 : PheAsnPheAlaPheLeuValAsnGluLysPheArgPheThrIleThrIleGlnPh : 250 |||!..|||||| :!!:!!|||! !||||||!!!.!!|||!!:.!!! ||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3160721 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3160775 251 : eIleValSerThrLeuValValCysPheAsnLeuTyrGlnLeuThrArgValThrT : 269 |:!:|||!!!|||:!!..!:!!||||||||||||!:!!:!||||||!:! |||! eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGln---ThrL 3160776 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAG---ACCA : 3160829 270 : hrSerAsnGluLysTyrMetGlnLeuValLeuTyrMetCysCysMetLeuThrGln : 287 ! ! !!..!:!! !:!: !|||:!!! !!:!||| ! !!:!!!!!.!!||| ysValTyrSerGlnValLeuAlaLeuIleProPheMetValSerValPheAlaGln 3160830 : AGGTGTATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAG : 3160883 288 : IlePhePheTyrCysTrpTyrGlyAsnGluValLysLeu : 300 ||||||!:!! !||||||||||||||||||..!|||:!! IlePheTyrCysCysTrpTyrGlyAsnGluThrLysVal 3160884 : ATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTG : 3160924 vulgar: CbirOr188CTE 231 300 . KQ414646.1 3160720 3160924 + 163 M 35 105 G 1 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160721 3160924 163 + . gene_id 10 ; sequence CbirOr188CTE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160721 3160924 . + . KQ414646.1 exonerate:protein2genome:local exon 3160721 3160924 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3160721 3160924 163 + . alignment_id 10 ; Query CbirOr188CTE ; Align 3160721 232 105 ; Align 3160826 268 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr188CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 163 Query range: 231 -> 300 Target range: 3174931 -> 3175135 232 : PheAsnPheAlaPheLeuValAsnGluLysPheArgPheThrIleThrIleGlnPh : 250 |||!..|||||| :!!:!!|||! !||||||!!!.!!|||!!:.!!! ||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3174932 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3174986 251 : eIleValSerThrLeuValValCysPheAsnLeuTyrGlnLeuThrArgValThrT : 269 |:!:|||!!!|||:!!..!:!!||||||||||||!:!!:!||||||!:! |||! eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGln---ThrL 3174987 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAG---ACCA : 3175040 270 : hrSerAsnGluLysTyrMetGlnLeuValLeuTyrMetCysCysMetLeuThrGln : 287 ! ! !!..!:!! !:!: !|||:!!! !!:!||| ! !!:!!!!!.!!||| ysValTyrSerGlnValLeuAlaLeuIleProPheMetValSerValPheAlaGln 3175041 : AGGTGTATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAG : 3175094 288 : IlePhePheTyrCysTrpTyrGlyAsnGluValLysLeu : 300 ||||||!:!! !||||||||||||||||||..!|||:!! IlePheTyrCysCysTrpTyrGlyAsnGluThrLysVal 3175095 : ATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTG : 3175135 vulgar: CbirOr188CTE 231 300 . KQ414646.1 3174931 3175135 + 163 M 35 105 G 1 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174932 3175135 163 + . gene_id 11 ; sequence CbirOr188CTE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174932 3175135 . + . KQ414646.1 exonerate:protein2genome:local exon 3174932 3175135 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3174932 3175135 163 + . alignment_id 11 ; Query CbirOr188CTE ; Align 3174932 232 105 ; Align 3175037 268 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr188CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 136 -> 236 Target range: 3174311 -> 3174618 137 : CysIleThrLeuThrSerLeuLeuThrAspTyrArgLysGlnAlaLeuThrPheAr : 155 |||||| !!!:!!|||:!!!!!|||! !!:!!:!! ::!! !||| !!.!!|| CysIleTrpPheSerSerIlePheThrAlaPheLysIleArgGluLeuProLeuAr 3174312 : tgtatatggTTCTCGTCGATCTTCACGGCTTTTAAGATCAGAGAGTTACCCCTTCG : 3174366 156 : gAlaTrpLeu-ProTyrAspTyrSerSerProIle<->LeuPheHisIleThrTyr : 172 |!.!||||||#|||!:!||||||!!!:!! !!:!: :!!||| !:!!|||||| gGlyTrpLeu#ProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyr 3174367 : AGGATGGTTAACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTAC : 3174421 173 : ValHisGlnLeuIleSerLeuIleValGlySerValLeuHisValAlaCysAspGl : 191 !.!:!!|||!!!:!!!!!|||||| !! !!!! ! ! !:!!!.!! !|||.. AlaTyrGlnPheValThrLeuIlePheLeuThrSerAlaIleIleGlySerAspAs 3174422 : GCTTATCAGTTTGTAACTCTGATATTCCTTACTTCTGCTATTATCGGTTCTGACAA : 3174478 192 : yLeuIleCysGlyPheLeuValHisIleCysCysGlnIleGluIleLeuGluSerA : 210 !|||.!! !!|||.!.|||:!!||||||! !||||||.!!|||||||||:!! !| nLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisA 3174479 : TCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATC : 3174535 211 : rgLeuArgArgIleValCysGluProAspIle<->LeuArgAspCysIleLeuGln : 227 |||||!:!!!!||| ! !!!: !!!: ! !!:!.!.||| !!!!!!. rgLeuLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHis 3174536 : GTCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCAT : 3174589 228 : HisAsnArgIlePheAsnPheAlaPhe : 236 ||| !!||||||!:!!!.|||...::: HisTyrArgIleTyrLysPheValTyr 3174590 : CATTATCGCATATACAAGTTTgtctac : 3174618 vulgar: CbirOr188CTE 136 236 . KQ414646.1 3174311 3174618 + 144 M 22 66 F 0 1 M 8 24 G 0 3 M 54 162 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174312 3174618 144 + . gene_id 12 ; sequence CbirOr188CTE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174312 3174618 . + . KQ414646.1 exonerate:protein2genome:local exon 3174312 3174618 . + . insertions 6 ; deletions 0 ; frameshifts 1 KQ414646.1 exonerate:protein2genome:local similarity 3174312 3174618 144 + . alignment_id 12 ; Query CbirOr188CTE ; Align 3174312 137 66 ; Align 3174379 159 24 ; Align 3174406 167 162 ; Align 3174571 221 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr176 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 264 -> 333 Target range: 3155805 -> 3156009 265 : AsnPheThrArgGluIleGlnAspIlePheGlyThrIleIlePhePheGlnPheLe : 283 !..|||||| ! !|||.!.!!: !|||! !! ! |||||| !|||||| ArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAl 3155806 : AGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGC : 3155860 284 : uSerAsnCysLeuIleIleCysLeuIleAlaPheAsnValSerGlnMetLysValT : 302 ! !!:! ||| ||||||!!!! ! !!:! :!!!!! ! ! ||| aValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspVal- 3155861 : GGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTG- : 3155917 303 : yrIleProGluValLeuIleGlyMetLeuThrTyrMetCysCysMetThrTyrGln : 320 ! ||| !! !:!:! !!!::!!! !|||! !!|||||| ! ||| --ThrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGln 3155918 : --ACGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAA : 3155968 321 : IlePheIlePheCysTrpHisGlyAsnGluLeuHisLeu : 333 |||||||||!:!||||||:!!|||||||||:!! ! ||| IlePheIleTyrCysTrpTyrGlyAsnGluValLysLeu 3155969 : ATATTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTG : 3156009 vulgar: CbirOr176 264 333 . KQ414646.1 3155805 3156009 + 108 M 37 111 G 1 0 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155806 3156009 108 + . gene_id 1 ; sequence CbirOr176 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155806 3156009 . + . KQ414646.1 exonerate:protein2genome:local exon 3155806 3156009 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3155806 3156009 108 + . alignment_id 1 ; Query CbirOr176 ; Align 3155806 265 111 ; Align 3155917 303 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr178PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 467 Query range: 0 -> 364 Target range: 3177231 -> 3178884 1 : MetHisIleLeuProValSerPheAlaLeuPheAsnTyrThrValTyrUnkGlnPr : 19 ||||||! ||||||:!! !!|||||||||.!!!.!! ! !! !||| :!!|| MetHisArgLeuProLeuProPheAlaLeuLeuThrCysCysGlyTyrTrpLysPr 3177232 : ATGCATAGGCTTCCTTTGCCTTTCGCTCTGCTTACTTGCTGCGGCTACTGGAAACC : 3177286 20 : oValTyrPheProValAsnLeuLeuLysTyrUnkMetTyrAsnLeuTyrPheValP : 38 |..! ! !::|||!.!!:!! !||||||||| :!!|||:!!:!!|||! |||| oThrLysTrpProAlaSerSerLeuLysTyrTrpLeuTyrAspValTyrSerValP 3177287 : GACAAAATGGCCAGCTAGTTCGCTGAAATACTGGCTGTACGACGTTTACTCGGTGT : 3177343 39 : heMetIleThrLeuLeuAsnThrPheValPheTyrGlyLeuValAsnIlePhePhe : 56 |||||:!! !|||||| |||...||| !!.!! !:!!:!! ! !!. heMetValPheLeuLeuTyrPhePheThrPheCysAlaCysIleAsp---SerLeu 3177344 : TTATGGTCTTTTTGCTctattttttcacgttttgCGCATGCATAGAC---TCGTTG : 3177394 57 : MetSerAlaAsnLeuValArgGluGlnPheValAsnLysCysTyrLeuTyrPhePh : 75 !!:||| !:!!||| !! ! ! ! ! ! !... !:!:!!! ! ! || IleSerLysAspLeuLysThrMetThrAspLysPheSerLeuPheIleSerValPh 3177395 : ATCAGCAAAGATCTCAAGACGATGACAGATAAGTTTTCTCTGTTCATCTCTGTGTT : 3177451 76 : eArgSerThrAlaPheLeuAlaArgSerCysIleSerLeuUnkLeuArgGluAspL : 94 | !! !:!! ! :!!|||!.!! !! !:!!..!! ! !! ! !:!! eGlyValSerLeuLysValAlaAsnLeuPheLeuGlnArgGlyArgIleIleAsnV 3177452 : CGGTGTCTCTCTGAAAGTAGCCAATTTATTCCTTCAACGGGGGAGGATTATAAACG : 3177508 95 : ysLeuAsnLysMetLeuLeuArgGluAsnCysIleProLysGluGlyHisLysVal : 112 !:!!||| !!:||||||! !|||||||||||||||!:!!!:! !!!.:!! ! alMetAsn---IleLeuLeuThrGluAsnCysIleProArgAspGluGlnGluLys 3177509 : TGATGAAC---ATTTTGCTGACGGAGAATTGCATCCCGAGGGACGAGCAAGAAAAG : 3177559 113 : SerIleGlnAlaLysPheAsp{Ar} >>>> Target Intron 1 >>>> {g : 120 ! !|||||| !||| !|||{!:} 325 bp {! IleIleGlnArgLysAsnAsp{Ly}-+ ++{s 3177560 : ATAATACAACGGAAGAACGAT{AA}tt.........................ag{A : 3177910 121 : }AsnAlaArgTyrThrIleThrValLeuArgAspIleProLeuTyrValTyrProL : 139 }!!. !! ! ! ! ! !:!!|||!.!!!: ! !! !!:!:!! ! !!: }LysLeuThrIleTyrCysGluIleLeuAsnGluSerAlaAlaPheLeuAlaThrV 3177911 : }AAACTGACAATCTACTGCGAGATCCTGAACGAATCCGCCGCATTCTTAGCTACGG : 3177965 140 : euArgAsnPheThrCysTrpUnkTrpThrCysSerPheProValTyrAspUnkAla : 157 !! !.!.!:!!.! !:: ! :!! !!!!!.|||:!!! !||| !.! alAlaGlnTyrAsnGluPheIleArgSerLysThrLeuProIleSerAspTrpVal 3177966 : TAGCACAGTACAACGAATTCATACGCTCCAAGACTTTGCCAATATCCGACTGGGTG : 3178019 158 : ProPheAspValTrpSerIleTyrIlePheMetProThrLeuLeuPheGlnCysVa : 176 |||!:!|||:!!! ||| ! ! :!:!:!! ! !:!!|||||| !||| :! ProTyrAspLeuSerSerGlnLysLeuTyrThrIleSerLeuLeuHisGlnThrIl 3178020 : CCTTACGATTTGTCCTCGCAAAAATTGTACACGATATCTCTGTTGCATCAAACGAT : 3178076 177 : lThrLeuMetLeuCysAlaAsnSerSerValThrHisGluThrLeuIleValArgM : 195 ! !||||||:!!|||||||||!!!||||||.!!:!!||||||||||||!.! !!: eGlyLeuMetValCysAlaAsnThrSerValAlaAsnGluThrLeuIleAlaGlyL 3178077 : AGGCCTGATGGTCTGTGCGAACACCAGCGTGGCAAACGAAACACTTATCGCAGGGC : 3178133 196 : etMetIleGlnIleCysSerGlnPheGluThrLeuCysHisArgThrAsnLeuLeu : 213 !!||||||||| ! !!:!!|||||||||! !!!!|||||||||.!!!.. !||| euMetIleGlnAlaGlyAlaGlnPheGluIlePheCysHisArgAlaArgAsnLeu 3178134 : TGATGATACAAGCTGGCGCGCAATTCGAGATATTTTGCCATCGAGCGAGAAATCTA : 3178187 214 : ProMetLeuLeuMetAsnValGluLysLysTyrLysSerAspGlnAspLeuIleMe : 232 !! ||||||:!!:!!..!..!!:!!!. !:!!||| :!!! !!!!! ! ThrAlaLeuLeuLeuAspThrArgArgAsnSerGluSerArgGluAlaPheLysTh 3178188 : ACCGCCCTACTCTTGGATACCAGAAGAAACAGCGAGTCTAGAGAAGCTTTTAAGAC : 3178244 233 : tUnkGluArgMetMetIleArgAsnLeuMetTyrHisHisLeuTyrIleTyr{Ly} : 250 !.! :::::: |||...::: :!!|||||| ! :!!|||{||} rArgCysAsnArgIleLeuGlyAsnPheValGluTyrHisLeuGluValTyr{Ly} 3178245 : CAGATGTAATCGaatacttggaaatttcgtggaATATCATCTGGAAGTTTAC{aa} : 3178298 251 : >>>> Target Intron 2 >>>> {s}PheAlaAsnMetValAsn<->Val : 257 87 bp {|}|||.!!.!.! !|||||| ||| ++ ++{s}PheThrGlnThrValAsnThrVal 3178299 : gt.........................ag{a}TTTACACAGACGGTGAACACTGTG : 3178409 258 : LeuThrLeuValMetPheValGlnPheSerValSerSerLeuValLeuCysMetSe : 276 !!! !! !:!!!!:|||:!!|||||||||:!!|||||| !|||||||||:!!|| PheGlnTyrMetIlePheLeuGlnPheSerIleSerSerThrValLeuCysLeuSe 3178410 : TTCCAGTACATGATTTTCCTGCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAG : 3178466 277 : rIleTyrLysIleSerThrMetThrSerLeuLeuThrLeuAspPheAspValPheS : 295 ||||||||||!!:||||||!!:!.! !! !!!!:!:!!:!!|||! ! !! !: rIleTyrLysMetSerThrIleAsnPro---PheSerMetAsnPheValTrpCysA 3178467 : CATCTATAAAATGTCGACGATTAATCCA---TTTAGCATGAACTTCGTCTGGTGCG : 3178520 296 : erTyrLeuTyrThrProIleLeuThrGlnIlePheLeuTyrCysUnkTyrGlyAsn : 313 !!! !! !! ! !!!:|||||||||:!:!:!||||||||| !:!|||||| laSerTyrLeuCysCysMetLeuThrGlnValTyrLeuTyrCysTrpPheGlyAsn 3178521 : CCTCCTATTTATGCTGTATGCTCACGCAGGTGTATTTATACTGTTGGTTCGGGAAC : 3178574 314 : GluValThrLeuLys >>>> Target Intron 3 >>>> SerIleAspVal : 322 ||||||||||||||| 155 bp ||| ! ! ||| GluValThrLeuLys++ ++SerGluLysVal 3178575 : GAGGTGACGTTGAAGgt.........................agAGCGAAAAAGTA : 3178756 323 : SerAsnAspIleTyrLysMetAsnTrpThrIleLeuLysIleTrpIleIleLysAs : 341 .!!.!.! !||||||:!!|||:!!|||||| !||| ! ! |||! ||||| GlyGluAlaIleTyrGluMetAspTrpThrAlaLeuProThrAspIleArgLysAs 3178757 : GGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCCCACCGATATAAGGAAAGA : 3178813 342 : pLeuIleValMetThrMetCysValAlaLysProIleLysMetSerSerGlyTyrV : 360 ||||:!::!!!!:! ! ! ! ! !::!|||:!!||||||!!!||||||:!!| pLeuLeuLeuIleMetAlaArgSerLysArgProValLysMetThrSerGlyHisV 3178814 : TCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTAAAATGACAAGCGGCCACG : 3178870 361 : alValIleLeuThr : 364 |||||:!!|||:!! alValValLeuSer 3178871 : TCGTCGTTTTATCC : 3178884 vulgar: CbirOr178PSE 0 364 . KQ414646.1 3177231 3178884 + 467 M 53 159 G 1 0 M 42 126 G 1 0 M 22 66 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 129 387 S 0 2 5 0 2 I 0 83 3 0 2 S 1 1 M 6 18 G 0 3 M 29 87 G 1 0 M 32 96 5 0 2 I 0 151 3 0 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3177232 3178884 467 + . gene_id 1 ; sequence CbirOr178PSE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3177232 3177584 . + . KQ414646.1 exonerate:protein2genome:local exon 3177232 3177584 . + . insertions 0 ; deletions 2 KQ414646.1 exonerate:protein2genome:local splice5 3177585 3177586 . + . intron_id 1 ; splice_site "TT" KQ414646.1 exonerate:protein2genome:local intron 3177585 3177909 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3177908 3177909 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3177910 3178299 . + . KQ414646.1 exonerate:protein2genome:local exon 3177910 3178299 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178300 3178301 . + . intron_id 2 ; splice_site "gt" KQ414646.1 exonerate:protein2genome:local intron 3178300 3178386 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3178385 3178386 . + . intron_id 1 ; splice_site "ag" KQ414646.1 exonerate:protein2genome:local cds 3178387 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178387 3178591 . + . insertions 3 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3178592 3178593 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3178592 3178746 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3178745 3178746 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3178747 3178884 . + . KQ414646.1 exonerate:protein2genome:local exon 3178747 3178884 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3177232 3178884 467 + . alignment_id 1 ; Query CbirOr178PSE ; Align 3177232 1 159 ; Align 3177391 55 126 ; Align 3177517 98 66 ; Align 3177911 121 387 ; Align 3178388 251 18 ; Align 3178409 257 87 ; Align 3178496 287 96 ; Align 3178747 319 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr178PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 260 -> 360 Target range: 3150637 -> 3150995 261 : ValMetPheValGlnPheSerValSerSerLeuValLeuCysMetSerIleTyrLy : 279 :!!!!: !||||||.!!! ! !|||!!!||||||:!!|||.!.! !:!:|||:! IleIleGlyValGlnLeuLeuSerSerThrLeuValValCysPheIleLeuTyrGl 3150638 : ATAATAGGCGTGCAGCTTTTATCGAGCACGCTGGTAGTGTGTTTCATCCTGTACGA : 3150692 280 : sIleSerThrMetThrSerLeuLeuThrLeuAspPheAspValPheSerTyrLeuT : 298 !:!::!!!.!! ! !! !!:!! !:!! ! !!.!..!. !! !! !|||||| uLeuAlaAsnThrProProIleSerSerLysTyrLeuGlnPheValLeuTyrLeu- 3150693 : ATTGGCGAACACGCCTCCAATCAGCTCCAAGTACCTGCAATTTGTCCTGTACCTG- : 3150749 299 : yrThrProIleLeuThrGlnIlePheLeuTyrCysUnkTyrGlyAsnGluValThr : 316 .!! !!!::!!||||||||||||!!!|||||| ||||||.!.:!!:!!! ! --AlaCysMetMetThrGlnIlePhePheTyrCysTrpTyrGlyGluGlnLeuLys 3150750 : --GCCTGTATGATGACGCAGATCTTCTTTTACTGCTGGTACGGCGAGCAGTTGAAA : 3150800 317 : LeuLys >>>> Target Intron 1 >>>> SerIleAspValSerAsnAsp : 325 |||||| 61 bp |||:!!!!::!! !..! LeuLys++ ++SerValGluIleValArgThr 3150801 : CTGAAGgt.........................agAGCGTCGAGATTGTGCGCACG : 3150888 326 : IleTyrLysMetAsnTrpThrIleLeuLysIleTrpIleIleLysAspLeuIleVa : 344 |||!:!:!!|||:!!|||! ! !|||:!!! ! ! |||! |||||||||||||| IlePheGluMetAspTrpIleProLeuGlnAsnGlyIleLysLysAspLeuIleVa 3150889 : ATCTTCGAAATGGATTGGATACCTCTCCAGAACGGTATCAAGAAGGATTTGATAGT : 3150945 345 : lMetThrMetCysValAlaLysProIleLysMetSerSerGlyTyrVal : 360 |:!!.!!! ! !.! !! ||||||:!!:!!!!!!!!!.!|||:!! lValAlaArgArgAlaMetIleProIleGluLeuThrCysAlaTyrMet 3150946 : CGTGGCGAGAAGAGCGATGATCCCGATCGAGTTGACCTGCGCGTACATG : 3150995 vulgar: CbirOr178PSE 260 360 . KQ414646.1 3150637 3150995 + 132 M 37 111 G 1 0 M 20 60 5 0 2 I 0 57 3 0 2 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150638 3150995 132 + . gene_id 2 ; sequence CbirOr178PSE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3150638 3150808 . + . KQ414646.1 exonerate:protein2genome:local exon 3150638 3150808 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3150809 3150810 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150809 3150869 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150868 3150869 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150870 3150995 . + . KQ414646.1 exonerate:protein2genome:local exon 3150870 3150995 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150638 3150995 132 + . alignment_id 2 ; Query CbirOr178PSE ; Align 3150638 261 111 ; Align 3150749 299 60 ; Align 3150870 319 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr178PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 259 -> 318 Target range: 3155838 -> 3156012 260 : LeuValMetPheValGlnPheSerValSerSerLeuValLeuCysMetSerIleTy : 278 :!!!.!!!:|||..!||||||:!!||||||!!!|||!.!:!!|||.!.!:!:!!|| MetAlaIlePheThrGlnPheAlaValSerThrLeuAlaIleCysPheAsnLeuTy 3155839 : ATGGCGATTTTCACTCAATTCGCGGTGAGTACGCTGGCGATATGCTTCAATCTTTA : 3155893 279 : rLysIleSerThrMetThrSerLeuLeuThrLeuAspPheAspValPheSerTyrL : 297 | :!!! !||| :!!..!:!! ! !!:!! !:!! ! !.!.! ! ! r---LeuLeuThrGlySerAspValThrProIleArgTyrValGluIleIleMetT 3155894 : C---CTATTAACAGGATCAGATGTGACGCCGATTAGGTATGTGGAAATAATCATGT : 3155947 298 : euTyrThrProIleLeuThrGlnIlePheLeuTyrCysUnkTyrGlyAsnGluVal : 315 ! !!:! !!!:|||||||||||||||:!!|||||| ||||||||||||||| yrSerSerCysMetLeuThrGlnIlePheIleTyrCysTrpTyrGlyAsnGluVal 3155948 : ACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTGGTACGGGAACGAAGTT : 3156001 316 : ThrLeuLys : 318 ! !|||||| LysLeuLys 3156002 : AAGCTGAAG : 3156012 vulgar: CbirOr178PSE 259 318 . KQ414646.1 3155838 3156012 + 106 M 19 57 G 1 0 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155839 3156012 106 + . gene_id 3 ; sequence CbirOr178PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155839 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155839 3156012 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3155839 3156012 106 + . alignment_id 3 ; Query CbirOr178PSE ; Align 3155839 260 57 ; Align 3155896 280 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr189 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 649 Query range: 0 -> 301 Target range: 3149023 -> 3150808 1 : MetArgIleLeuGlnLeuThrPheLysIleLeuThrPheIleGlyCysTrpArgPr : 19 ||| !||||||!:!! !.!!|||!!.|||||||||.!! !|||||||||||||| MetAlaIleLeuArgProAlaPheAsnIleLeuThrIleCysGlyCysTrpArgPr 3149024 : ATGGCTATCTTACGGCCAGCTTTCAACATACTGACGATCTGCGGATGCTGGAGGCC : 3149078 20 : oGluSerTrpSerSerLeuTyrLeuArgMetValTyrGlyAlaTyrThrIlePheM : 38 | |||!! !!!!! ! ! !!:! !.!||| !!.!||||||!!:|||: oCysSerCysArgThrThrArgAlaLysAlaAlaTyrIleValTyrThrMetPheV 3149079 : GTGCTCGTGCCGAACGACACGCGCCAAGGCCGCGTACATCGTTTACACGATGTTCG : 3149135 39 : etIleIleLeuLeuTyrThrPheLeuMetSerGlnPheLeuAspIleIleTrpAsn : 56 !!:!!:!!||||||:!!!:!|||! !!!:|||||||||...::::::||| !||| alValLeuLeuLeuHisSerPheCysIleSerGlnPhePheAsnValIleLeuAsn 3149136 : TGGTACTTTTATTGCACAGCTTCTGCATctcgcaatttttcaacgtgatACTGAAC : 3149189 57 : ValAspAsnAlaGluAspPheThrGluAsnLeuTyrValMetLeuAlaSerValVa : 75 :!! !..|||!!:!!:.!.!:!|||!:!!!!|||:!!.!.:!!|||||||||:! LeuArgThrAlaAspGluLeuSerGluSerPheTyrMetPheIleAlaSerValLe 3149190 : TTGAGAACGGCGGACGAGCTGAGCGAGAGTTTCTACATGTTCATCGCGTCCGTTCT : 3149246 76 : lSerCysSerLysMetLeuSerLeuLeuValAsnArgArgAsnIleTyrAlaLeuT : 94 !||||||!!!|||!!::!!!!!||||||..!|||!.! !!!:!||| ! !||| uSerCysCysLysIleValThrLeuLeuThrAsnHisGlySerIleGluIleLeuA 3149247 : GTCCTGCTGCAAGATCGTCACGCTGCTGACGAACCACGGAAGCATCGAGATCCTCC : 3149303 95 : hrAsnIleLeuIleGluLysProHisLysProLeuGlnIleAspGluIleLysIle : 112 !!..! !||| |||:!!||| !||||||:!!... !!!:||| ! ||| rgArgArgLeuGluGluGluProCysLysProValSerAlaGluGluAlaValIle 3149304 : GGAGGAGACTGGAGGAGGAGCCGTGTAAACCTGTGAGCGCCGAGGAGGCTGTCATA : 3149357 113 : GlnTyrLysPheAsnLysLeuIle{Gl} >>>> Target Intron 1 >>>> : 121 ||| !||||||:!!!:! !|||{ } 649 bp GlnSerLysPheAspArgAsnIle{Gl}++ + 3149358 : CAGAGTAAATTCGACAGAAACATC{GG}gt.........................a : 3150033 122 : {n}AsnLysThrPheTrpTyrThrIleLeuValGluThrThrCysAlaCysIleT : 139 {!}::: !|||.!!!::|||||||||||||||||| !||| ! !|||!!:! +{y}SerValThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCysMetI 3150034 : g{G}TCGGTGACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTGTATGA : 3150087 140 : hrMetThrSerLeuPheThrGluPheArgLysGlyAsnLeuThrTyrArgAlaTrp : 157 !:!::!!||||||.!! !!!:|||!.!:!! !!.!.|||.!!|||||||||||| leLeuSerSerLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgAlaTrp 3150088 : TCCTCTCTTCGTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAGCCTGG : 3150141 158 : LeuProTyrAsnTyrSerSerThrIleValPheCysPheThrTyrAlaHisGlnLe : 176 ||||||!:!:!!|||||| ! !!! ! !!:!! !.!!.!!|||!.!||||||:! LeuProPheAspTyrSerLeuProThrTyrTyrTyrIleAlaTyrValHisGlnIl 3150142 : CTGCCCTTCGATTACTCTCTGCCAACTTACTATTACATCGCGTACGTTCATCAGAT : 3150198 177 : uLeuSerLeuThrAlaGlySerLeuValAsnValAlaCysAspSerLeuIleCysG : 195 !:!!:!!|||! !!.! !|||||| !||||||||||||||| !:!!||||||| eValAlaLeuIleGlyThrSerLeuSerAsnValAlaCysAspValIleIleCysG 3150199 : CGTCGCGCTGATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCATCTGCG : 3150255 196 : lyLeuLeuValHisIleCysCysGlnIleGluIleLeuGluTyrArgLeuSerLys : 213 |||||||||||||| !||| !!||| |||||||||:!!:!!|||:!!!.!:!! lyLeuLeuValHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMetLysGlu 3150256 : GGTTGCTCGTTCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATGAAGGAG : 3150309 214 : LeuSerArgAsp<->HisAspValLeuArgAspCysValLeuHisHisAspSerIl : 231 :!!!!!!:!!!: ... !:!! !! ! !|||! ! !||||||! !:! MetThrGlnGluGlnArgProAsnIleGlyLysIleValArgPheHisAspTyrLe 3150310 : ATGACGCAGGAACAGAGGCCGAATATCGGGAAAATCGTTCGTTTCCACGATTATCT : 3150366 232 : ePhe{Al} >>>> Target Intron 2 >>>> {a}TyrAlaHisLysLeuA : 239 !!:!{!.} 230 bp {!}|||!.! !! !:!!. uTyr{Gl}++ ++{y}TyrValPheThrMetG 3150367 : TTAC{GG}gt.........................ag{G}TACGTTTTCACGATGC : 3150620 240 : snAsnGluPheArgMetThrIleAlaMetGlnPheIleValSerThrMetValVal : 257 !..!.:!!|||||| !! !|||!.!:!!|||.!!:!! !||||||:!!|||||| lnGluLysPheArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuValVal 3150621 : AAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGGTAGTG : 3150674 258 : CysSerAsnLeuTyrGlnMetThrLysSerThrThrAlaAsnAlaSerTyrLeuPr : 276 |||! !! !||||||:!!:!!.!!!!.!!! !! !! !!:!:!!!.!||||||! CysPheIleLeuTyrGluLeuAlaAsnThrProProIleSerSerLysTyrLeuGl 3150675 : TGTTTCATCCTGTACGAATTGGCGAACACGCCTCCAATCAGCTCCAAGTACCTGCA : 3150731 277 : oLeuLeuLeuTyrMetSerCysMetMetThrGlnIlePheIleTyrCysTrpTyrG : 295 !!!!:!!||||||:!!:!!|||||||||||||||||||||.!!||||||||||||| nPheValLeuTyrLeuAlaCysMetMetThrGlnIlePhePheTyrCysTrpTyrG 3150732 : ATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATCTTCTTTTACTGCTGGTACG : 3150788 296 : lyAsnGluValLysLeuLys : 301 ||.!.:!!:!!||||||||| lyGluGlnLeuLysLeuLys 3150789 : GCGAGCAGTTGAAACTGAAG : 3150808 vulgar: CbirOr189 0 301 . KQ414646.1 3149023 3150808 + 649 M 120 360 S 0 2 5 0 2 I 0 645 3 0 2 S 1 1 M 96 288 G 0 3 M 15 45 S 0 2 5 0 2 I 0 226 3 0 2 S 1 1 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3149024 3150808 649 + . gene_id 1 ; sequence CbirOr189 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3149024 3149385 . + . KQ414646.1 exonerate:protein2genome:local exon 3149024 3149385 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3149386 3149387 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3149386 3150034 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150033 3150034 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150035 3150373 . + . KQ414646.1 exonerate:protein2genome:local exon 3150035 3150373 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150374 3150375 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150374 3150603 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3150602 3150603 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150604 3150808 . + . KQ414646.1 exonerate:protein2genome:local exon 3150604 3150808 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3149024 3150808 649 + . alignment_id 1 ; Query CbirOr189 ; Align 3149024 1 360 ; Align 3150036 122 288 ; Align 3150327 218 45 ; Align 3150605 234 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr189 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 515 Query range: 122 -> 367 Target range: 3164322 -> 3165536 123 : LysThrPheTrpTyrThrIleLeuValGluThrThrCysAlaCysIleThrMetTh : 141 !!.|||.!! ! ||| !! !|||:!! !! ! !... !!! ||| !:!!! AsnThrIleGlyTyrTrpSerLeuLeuLeuIleCysAlaPheTrpIleTyrValAr 3164323 : AACACGATTGGCTACTGGAGTTTACTATTAATTTGTGCGTTCTGGATATACGTGAG : 3164377 142 : rSerLeuPheThrGluPheArgLysGlyAsnLeuThrTyrArgAlaTrpLeuProT : 160 !||||||!!.|||!!:|||!!!!.. !!!!.|||! !!:!|||||||||||||||| gSerLeuLeuThrAspPheSerSerArgLysLeuMetPheArgAlaTrpLeuProT 3164378 : ATCGCTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGCATGGTTACCCT : 3164434 161 : yrAsnTyrSerSerThrIleValPheCysPheThrTyrAlaHisGlnLeuLeuSer : 178 ||:!!|||||| !!.!! !:!!||| !.!!|||!:!!.!|||||| !:!!:!! yrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAlaIleAla 3164435 : ACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCC : 3164488 179 : LeuThrAlaGlySerLeuValAsnValAlaCysAspSerLeuIleCysGlyLeuLe : 197 !||| ! !!!!! ! !!:!|||.!! ||||||||| ! !|||||||| AlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLe 3164489 : GCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTT : 3164545 198 : uValHisIleCysCysGlnIleGluIleLeuGluTyrArgLeuSerLysLeuSerA : 216 |:!!:!!|||! !||||||.!!||||||||||||:!!||||||!!!!!.:!!!.!! uIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysT 3164546 : GATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAA : 3164602 217 : rgAspHis<->AspValLeuArgAspCysValLeuHisHisAspSerIlePhe{Al : 233 !!!:!!. ||| !:!!!:!.!.|||!.!! !||||||||| !!|||!:!{ hrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIleTyr{Gl 3164603 : CTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTATATAC{CA : 3164656 234 : } >>>> Target Intron 1 >>>> {a}TyrAlaHisLysLeuAsnAsnGl : 241 } 325 bp {!}!:!:!! ! |||:!!|||.!.|| }++ ++{n}PheSerLysLysValAsnGluGl 3164657 : }gt.........................ag{A}TTTTCGAAAAAGGTGAACGAAGA : 3165005 242 : uPheArgMetThrIleAlaMetGlnPheIleValSerThrMetValValCysSerA : 260 ||||!:!:!!! !:!: ! |||||| !:!!|||! ! !|||:!!|||! !| uPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIleCysPheA 3165006 : ATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTTCA : 3165062 261 : snLeuTyrGlnMetThrLysSerThrThrAlaAsnAlaSerTyrLeuProLeuLeu : 278 ||||||||!:!||||||:!! ! !! ! !:!:......:::::: ::::!! snLeuTyrArgMetThrGln---IleLysMetAspThrLysPheValGluIleIle 3165063 : ATCTTTACCGAATGACACAG---ATCAAAATGGAcacgaaattcgtcgaaatcaTA : 3165113 279 : LeuTyrMetSerCysMetMetThrGlnIlePheIleTyrCysTrpTyrGlyAsnGl : 297 |||||| ! !|||! !!:|||||||||||| !|||||||||||||||||||| LeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGl 3165114 : CTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGGCAACGA : 3165170 298 : uValLysLeuLys >>>> Target Intron 2 >>>> SerIleGlnLeuVa : 306 |||||||! !||| 80 bp |||:!!|||||| uValLysHisLys++ ++SerLeuGlnLeuPr 3165171 : AGTGAAACATAAGgt.........................agAGCCTCCAACTTCC : 3165277 307 : lAspAsnIlePheAlaMetAspTrpLeuThrLeuAspArgAsnValThrArgGlyL : 325 ! !!! |||||| !! |||||| !:!!|||:!!!.!||||||||||||!.!| oTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArgAlaL 3165278 : ATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGAGCAC : 3165334 326 : euLeuIleIleMetAsnArgAlaThrIleProIleGluPheThrSerGlyTyrVal : 343 ||||||||!!:|||!..||||||..!! |||||||||||||||||| !:!!||| euLeuIleMetMetArgArgAlaValArgProIleGluPheThrSerIleHisVal 3165335 : TTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCACGTT : 3165388 344 : PheSerMetAsnLeuAspSerPheValGly >>>> Target Intron 3 >>> : 354 !!|||:!!||||||!!:||||||:!!!.! 74 bp ValSerValAsnLeuGluSerPheMetAla++ 3165389 : GTCTCTGTGAATCTCGAATCCTTCATGGCAgt........................ : 3165423 355 : > IleLeuLysThrSerTyrSerAlaTyrAsnIleLeuLysLys : 367 :!!:!!||||||||||||||||||!:!|||!!::!!:!!:!! ++ValIleLysThrSerTyrSerAlaPheAsnMetIleGlnGln 3165424 : .agGTAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAACAA : 3165536 vulgar: CbirOr189 122 367 . KQ414646.1 3164322 3165536 + 515 M 96 288 G 0 3 M 14 42 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 33 99 G 1 0 M 34 102 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164323 3165536 515 + . gene_id 2 ; sequence CbirOr189 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3164323 3164657 . + . KQ414646.1 exonerate:protein2genome:local exon 3164323 3164657 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164658 3164659 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164658 3164982 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3164981 3164982 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164983 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164983 3165184 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3165185 3165186 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165185 3165264 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3165263 3165264 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165265 3165420 . + . KQ414646.1 exonerate:protein2genome:local exon 3165265 3165420 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165421 3165422 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165421 3165494 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3165493 3165494 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165495 3165536 . + . KQ414646.1 exonerate:protein2genome:local exon 3165495 3165536 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164323 3165536 515 + . alignment_id 2 ; Query CbirOr189 ; Align 3164323 123 288 ; Align 3164614 219 42 ; Align 3164984 234 99 ; Align 3165083 268 102 ; Align 3165265 302 156 ; Align 3165495 354 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr189 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 494 Query range: 122 -> 367 Target range: 3157794 -> 3159008 123 : LysThrPheTrpTyrThrIleLeuValGluThrThrCysAlaCysIleThrMetTh : 141 !!.|||.!! ! ||| !! |||::: ::: !! !||| !:!!! AsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrValAr 3157795 : AACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATATACGTGAG : 3157849 142 : rSerLeuPheThrGluPheArgLysGlyAsnLeuThrTyrArgAlaTrpLeuProT : 160 !||||||!!.! !!!:|||!!!!!. !!!!.|||! !!:!|||||||||:!!|||| gSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProT 3157850 : ATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCT : 3157906 161 : yrAsnTyrSerSerThrIleValPheCysPheThrTyrAlaHisGlnLeuLeuSer : 178 ||:!!|||||| !!.!! !:!!||| !.!!|||! !!.!|||||| !:!!:!! yrAspTyrSerProAlaProIlePheIleLeuThrSerValHisGlnAlaIleAla 3157907 : ACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTCCGTCCATCAAGCTATAGCC : 3157960 179 : LeuThrAlaGlySerLeuValAsnValAlaCysAspSerLeuIleCysGlyLeuLe : 197 ! !||| ! !!!!! ! !!.!|||.!! |||!!!||| ! !|||||||| SerThrIleCysCysThrSerThrValThrValAspThrLeuTyrThrGlyLeuLe 3157961 : TCGACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTATACACTGGCTTGTT : 3158017 198 : uValHisIleCysCysGlnIleGluIleLeuGluTyrArgLeuSerLysLeuSerA : 216 |:!!:!!|||! !||||||.!!||||||||||||:!!||||||!!!!!.:!!!.!! uIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysT 3158018 : GATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAA : 3158074 217 : rgAspHis<->AspValLeuArgAspCysValLeuHisHisAspSerIlePhe{Al : 233 !!!:!!. ||| !:!!!:!.!.|||!.!! !||||||||| !!|||!:!{ hrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIleTyr{Gl 3158075 : CTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTATATAC{CA : 3158128 234 : } >>>> Target Intron 1 >>>> {a}TyrAlaHisLysLeuAsnAsnGl : 241 } 325 bp {!}!:!:!! ! |||:!!|||.!.|| }++ ++{n}PheSerLysLysValAsnGluGl 3158129 : }gt.........................ag{A}TTTTCGAAAAAGGTGAACGAAGA : 3158477 242 : uPheArgMetThrIleAlaMetGlnPheIleValSerThrMetValValCysSerA : 260 ||||!:!:!!! !:!: ! |||||| !:!!|||! ! !|||:!!|||! !| uPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIleCysPheA 3158478 : ATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTTCA : 3158534 261 : snLeuTyrGlnMetThrLysSerThrThrAlaAsnAlaSerTyrLeuProLeuLeu : 278 ||||||||!:!||||||:!! ! !! ! !:!:......:::::: ::::!! snLeuTyrArgMetThrGln---IleLysMetAspThrLysPheValGluIleIle 3158535 : ATCTTTACCGAATGACACAG---ATCAAAATGGAcacgaaattcgtcgaaatcaTA : 3158585 279 : LeuTyrMetSerCysMetMetThrGlnIlePheIleTyrCysTrpTyrGlyAsnGl : 297 |||||| ! !|||! !!:|||||||||||| !|||||||||||||||||||| LeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGl 3158586 : CTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGTTGGTACGGCAACGA : 3158642 298 : uValLysLeuLys >>>> Target Intron 2 >>>> SerIleGlnLeuVa : 306 ||||||| !||| 80 bp |||:!!|||||| uValLysAspLys++ ++SerLeuGlnLeuPr 3158643 : AGTGAAAGATAAGgt.........................agAGCCTCCAACTTCC : 3158749 307 : lAspAsnIlePheAlaMetAspTrpLeuThrLeuAspArgAsnValThrArgGlyL : 325 ! !!! |||||| !! |||||| !:!!|||:!!!.!||||||||||||!.!| oTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArgAlaL 3158750 : ATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGAGCAC : 3158806 326 : euLeuIleIleMetAsnArgAlaThrIleProIleGluPheThrSerGlyTyrVal : 343 ||||||||!!:|||!..||||||..!! |||||||||||||||||| !:!!||| euLeuIleMetMetArgArgAlaValArgProIleGluPheThrSerIleHisVal 3158807 : TTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCACGTT : 3158860 344 : PheSerMetAsnLeuAspSerPheValGly >>>> Target Intron 3 >>> : 354 !!|||:!!||||||!!:||||||:!!!.! 74 bp ValSerValAsnLeuGluSerPheMetAla++ 3158861 : GTCTCTGTGAATCTCGAATCCTTCATGGCAgt........................ : 3158895 355 : > IleLeuLysThrSerTyrSerAlaTyrAsnIleLeuLysLys : 367 :!!:!!||||||:!!|||||||||!:!|||!!::!!:!!:!! ++ValIleLysThrAlaTyrSerAlaPheAsnMetIleGlnGln 3158896 : .agGTAATAAAAACTGCGTACTCCGCGTTCAACATGATCCAACAA : 3159008 vulgar: CbirOr189 122 367 . KQ414646.1 3157794 3159008 + 494 M 96 288 G 0 3 M 14 42 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 33 99 G 1 0 M 34 102 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157795 3159008 494 + . gene_id 3 ; sequence CbirOr189 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3157795 3158129 . + . KQ414646.1 exonerate:protein2genome:local exon 3157795 3158129 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158130 3158131 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158130 3158454 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3158453 3158454 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158455 3158656 . + . KQ414646.1 exonerate:protein2genome:local exon 3158455 3158656 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3158657 3158658 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158657 3158736 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3158735 3158736 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158737 3158892 . + . KQ414646.1 exonerate:protein2genome:local exon 3158737 3158892 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158893 3158894 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158893 3158966 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3158965 3158966 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158967 3159008 . + . KQ414646.1 exonerate:protein2genome:local exon 3158967 3159008 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157795 3159008 494 + . alignment_id 3 ; Query CbirOr189 ; Align 3157795 123 288 ; Align 3158086 219 42 ; Align 3158456 234 99 ; Align 3158555 268 102 ; Align 3158737 302 156 ; Align 3158967 354 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr189 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 459 Query range: 118 -> 367 Target range: 3155394 -> 3156416 119 : LeuIleGlnAsnLysThrPheTrpTyrThrIleLeuValGluThrThrCysAlaCy : 137 :!! !::!!..!..:!! !!::|||.!!||||||||||||:!!||| ! ValCysArgArgSerSerThrTyrTyrAlaIleLeuValGluSerThrValMetTh 3155395 : GTTTGCAGAAGAAGCTCAACCTATTACGCGATTCTGGTCGAATCGACGGTGATGAC : 3155449 138 : sIleThrMetThrSerLeuPheThrGluPheArgLysGlyAsnLeuThrTyrArgA : 156 !:!::!!.!. !:!!|||!!.! ! ! ..!..! !! !||| !!|||||| rLeuSerPheGlyAlaLeuLeuLysPro---GluSerArgProLeuProTyrArgI 3155450 : TTTGTCTTTCGGTGCACTGTTGAAACCA---GAATCACGTCCTTTACCGTATCGAA : 3155503 157 : laTrpLeuProTyrAsnTyrSerSerThrIleValPheCysPheThrTyrAlaHis : 174 !|||||||||! !||||||!!! !! !|||..!!:!|||! ! !|||.!!! ! leTrpLeuProCysAsnTyrThrProLeuIleThrTyrCysSerIleTyrThrLeu 3155504 : TTTGGCTACCTTGCAATTACACCCCGTTAATTACTTACTGTTCGATTTACACTCTC : 3155557 175 : GlnLeuLeuSerLeuThrAlaGlySerLeuValAsnValAlaCysAspSerLeuIl : 193 |||! !:!!:!!|||.!! !.!!:!!:!!:!!:!!|||||||||||||||||||| GlnCysValAlaLeuAlaLeuSerAlaMetMetHisValAlaCysAspSerLeuIl 3155558 : CAATGTGTGGCACTCGCTCTAAGCGCTATGATGCACGTCGCCTGCGACAGTTTGAT : 3155614 194 : eCysGlyLeuLeuValHisIleCysCysGlnIleGluIleLeuGluTyrArgLeuS : 212 |||||||||||||:!!|||! !! ! !!|||||||||||||||! ! !||||||! eCysGlyLeuLeuLeuHisThrTyrGlyGlnIleGluIleLeuGlyCysArgLeuL 3155615 : CTGCGGCCTGCTGTTACACACTTACGGCCAGATCGAGATCCTCGGTTGTCGTCTGA : 3155671 213 : erLysLeuSerArgAspHisAsp<->ValLeuArgAspCysValLeuHisHisAsp : 229 .. :::......:::...... ..!! !!:! ||||||! !:!!:!!:!! ysThrIleLysGluAsnGluSerLysThrSerLysLeuCysValArgTyrAsnAsn 3155672 : aaacgataaaagaaaacgagagtAAGACGTCCAAGTTGTGCGTTCGTTACAACAAC : 3155725 230 : SerIlePhe{Al} >>>> Target Intron 1 >>>> {a}TyrAlaHisLy : 237 !|||!:!{ } 69 bp {!}!:!.!! !! LeuIleTyr{Ar}++ ++{g}PheThrAlaMe 3155726 : CTTATCTAT{CG}gt.........................ag{A}TTCACCGCTAT : 3155818 238 : sLeuAsnAsnGluPheArgMetThrIleAlaMetGlnPheIleValSerThrMetV : 256 !:!!|||.!.:!!|||..!|||.!!||| !! |||||| |||||||||:!!! tIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAlaValSerThrLeuA 3155819 : GATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGTGAGTACGCTGG : 3155875 257 : alValCysSerAsnLeuTyrGlnMetThrLysSerThrThrAlaAsnAlaSerTyr : 274 .!:!!|||! !|||||||||! !:!:||| !||| !..!.!! !!!!||| laIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValThrProIleArgTyr 3155876 : CGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGACGCCGATTAGGTAT : 3155929 275 : LeuProLeuLeuLeuTyrMetSerCysMetMetThrGlnIlePheIleTyrCysTr : 293 :!! !:!!:!!:!!|||! |||||||||:!:||||||||||||||||||||||| ValGluIleIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysTr 3155930 : GTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTG : 3155986 294 : pTyrGlyAsnGluValLysLeuLys{Se} >>>> Target Intron 2 >>>> : 302 |||||||||||||||||||||||||{ } 73 bp pTyrGlyAsnGluValLysLeuLys{Va}-+ 3155987 : GTACGGGAACGAAGTTAAGCTGAAG{GT}tt......................... : 3156017 303 : {r}IleGlnLeuValAspAsnIlePheAlaMetAspTrpLeuThrLeuAspArg : 319 {!}:!!:!!:!! !:!!! |||||| !:!:|||||| ! !!!!!|||!:! ++{l}LeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLys 3156018 : ag{C}CTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAA : 3156137 320 : AsnValThrArgGlyLeuLeuIleIleMetAsnArgAlaThrIleProIleGluPh : 338 !..!! !|||..!:!!|||! !!!:|||! ||||||:!! |||||||||.! AlaThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIl 3156138 : GCTACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAAT : 3156194 339 : eThrSerGlyTyrValPheSerMetAsnLeuAspSerPheValGly >>>> Tar : 354 !! !|||! ! !|||.!!|||:!!||||||||||||||||||!.! eIleSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 3156195 : CATCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt........ : 3156244 355 : get Intron 3 >>>> IleLeuLysThrSerTyrSerAlaTyrAsnIleLeuL : 366 133 bp :!:|||||||||||||||||||||||||||:!!|||: ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuG 3156245 : .................agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCC : 3156411 367 : ysLys : 367 !!::: lnArg 3156412 : AACGC : 3156416 vulgar: CbirOr189 118 367 . KQ414646.1 3155394 3156416 + 459 M 28 84 G 1 0 M 72 216 G 0 3 M 13 39 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 68 204 S 0 2 5 0 2 I 0 69 3 0 2 S 1 1 M 51 153 5 0 2 I 0 129 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155395 3156416 459 + . gene_id 4 ; sequence CbirOr189 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3155395 3155738 . + . KQ414646.1 exonerate:protein2genome:local exon 3155395 3155738 . + . insertions 3 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3155739 3155740 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3155739 3155807 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3155806 3155807 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3155808 3156014 . + . KQ414646.1 exonerate:protein2genome:local exon 3155808 3156014 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156015 3156016 . + . intron_id 2 ; splice_site "TT" KQ414646.1 exonerate:protein2genome:local intron 3156015 3156087 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3156086 3156087 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156088 3156241 . + . KQ414646.1 exonerate:protein2genome:local exon 3156088 3156241 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156242 3156243 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156242 3156374 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3156373 3156374 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156375 3156416 . + . KQ414646.1 exonerate:protein2genome:local exon 3156375 3156416 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155395 3156416 459 + . alignment_id 4 ; Query CbirOr189 ; Align 3155395 119 84 ; Align 3155479 148 216 ; Align 3155698 220 39 ; Align 3155809 234 204 ; Align 3156089 303 153 ; Align 3156375 354 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr189 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 373 Query range: 116 -> 301 Target range: 3180035 -> 3180667 117 : AsnLysLeuIleGlnAsnLysThrPheTrpTyrThrIleLeuValGluThrThrCy : 135 ||| ! ||| !::!!!.!!..!! !! ! ||||||!!::!!||||||! !:!! AsnTyrLeuAspArgLysAsnAlaValArgTyrThrMetValValGluMetSerVa 3180036 : AATTATCTCGACAGGAAAAACGCTGTCAGATACACAATGGTAGTCGAGATGTCGGT : 3180090 136 : sAlaCysIleThrMetThrSerLeuPheThrGluPheArgLysGlyAsnLeuThrT : 154 !|||! ! !! !:!:!.!|||||| ! |||.!.|||!:! ! |||!..||||||| lAlaSerThrIleLeuAsnSerLeuValThrAsnPheGlnHisGlyArgLeuThrT 3180091 : CGCCTCGACTATTTTAAACTCGTTAGTGACCAACTTTCAACACGGCAGACTAACCT : 3180147 155 : yrArgAlaTrpLeuProTyrAsnTyrSerSerThrIleValPheCysPheThrTyr : 172 |||||!.!|||!!!||||||:!!|||!!!!!!.!!:!!:!!||| !!.|||||| yrArgGlyTrpPheProTyrAspTyrThrThrAlaValLeuPheProLeuThrTyr 3180148 : ACAGAGGCTGGTTCCCTTACGATTACACGACCGCCGTACTTTTTCCATTGACATAC : 3180201 173 : AlaHisGlnLeuLeuSerLeuThrAlaGlySerLeuValAsnValAlaCysAspSe : 191 |||! |||||||||!!!:!! !!.! !|||! !:!!:!!|||:!! |||! AlaLeuGlnLeuLeuCysValLeuValTyrSerTrpIleHisValSerValAspIl 3180202 : GCTCTGCAGCTATTATGCGTGCTCGTATATTCCTGGATCCACGTTTCAGTGGATAT : 3180258 192 : rLeuIleCysGlyLeuLeuValHisIleCysCysGlnIleGluIleLeuGluTyrA : 210 !|||.!!! !|||||||||:!!!!.:!:|||||||||.!!!!:|||||| | eLeuPhePheGlyLeuLeuMetGlnLeuCysCysGlnPheAspIleLeuPheSerA 3180259 : TCTCTTCTTCGGACTGTTGATGCAACTGTGCTGTCAATTCGAcattctcttctctc : 3180315 211 : rgLeuSerLysLeu<->SerArgAspHisAspValLeuArgAspCysValLeuHis : 227 ||...|||!..:!! |||..!:!! ! ! !||||||||| |||:!!! !||| rgPheSerSerIleThrSerGluAsnLysGlyValLeuArgArgCysIleArgHis 3180316 : gtttcAGTAGCATAACGTCGGAGAACAAGGGTGTTTTACGAAGATGCATTCGTCAT : 3180369 228 : HisAspSerIlePhe{Al} >>>> Target Intron 1 >>>> {a}TyrAl : 235 ||||||!!!|||!:!{ } 74 bp {!}! || HisAspArgIleTyr{Ar}++ ++{g}LeuAl 3180370 : CACGACAGAATTTAC{CG}gt.........................ag{T}TTAGC : 3180467 236 : aHisLysLeuAsnAsnGluPheArgMetThrIleAlaMetGlnPheIleValSerT : 254 |.!.! !:!!|||:!!....!.!:!:!!|||!!: ! ||||||.!!! !||| aGluIleMetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePheGlySerP 3180468 : TGAAATAATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTTCGGAAGCT : 3180524 255 : hrMetValValCysSerAsnLeuTyrGlnMetThrLysSerThrThrAlaAsnAla : 272 !||||||:!!||| !!:!||| !|||:!! !!!.:!! !! ! !!:!.!! heMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleLeuSerThr 3180525 : TTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTCTCAGCACC : 3180578 273 : SerTyrLeuProLeuLeuLeuTyrMetSerCysMetMetThrGlnIlePheIleTy : 291 ..!!:!||| !! !:::...|||:::||| ::::!! !|||! !|||:!!|| GluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPheLeuTy 3180579 : GAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGCTTTCTTTA : 3180635 292 : rCysTrpTyrGlyAsnGluValLysLeuLys : 301 ||||||||||||||||||||||!:! !||| rCysTrpTyrGlyAsnGluValArgThrLys 3180636 : CTGTTGGTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: CbirOr189 116 301 . KQ414646.1 3180035 3180667 + 373 M 98 294 G 0 3 M 18 54 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180036 3180667 373 + . gene_id 5 ; sequence CbirOr189 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3180036 3180388 . + . KQ414646.1 exonerate:protein2genome:local exon 3180036 3180388 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3180389 3180390 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3180389 3180462 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3180461 3180462 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3180463 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180463 3180667 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180036 3180667 373 + . alignment_id 5 ; Query CbirOr189 ; Align 3180036 117 294 ; Align 3180333 215 54 ; Align 3180464 234 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr189 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 220 Query range: 0 -> 123 Target range: 3152421 -> 3152790 1 : MetArgIleLeuGlnLeuThrPheLysIleLeuThrPheIleGlyCysTrpArgPr : 19 ||| !! !|||...! !|||||||||:!!|||||| ! ! !||| ! ! !|| MetAspThrLeuSerTrpThrPheLysLeuLeuThrValAsnGlyIleLeuAlaPr 3152422 : aTGGATACTCTAAGCTGGACGTTCAAGCTTCTGACGGTGAACGGTATTCTGGCACC : 3152476 20 : oGluSerTrpSerSerLeuTyrLeuArgMetValTyrGlyAlaTyrThrIlePheM : 38 |...:!!!::! !|||! !!::! !! !!!::!!|||||| !|||! !.!!|||| oSerAlaPheMetSerGlnTrpGlnThrIleLeuTyrGlyMetTyrMetPhePheM 3152477 : GTCCGCTTTCATGTCTCAGTGGCAGACGATTTTGTACGGGATGTACATGTTCTTCA : 3152533 39 : etIleIleLeuLeuTyrThrPheLeuMetSerGlnPheLeuAspIleIleTrpAsn : 56 ||:!: :!!||||||.!!.!. ! !!!! !.!!|||! !!!:|||!::||| etValSerMetLeuTyrAlaMetGluCysCysLeuIleLeuGlyMetIlePheAsn 3152534 : TGGTGTCGATGCTCTACGCGATGGAGTGCTGCCTGATCTTGGGCATGATATTCAAC : 3152587 57 : ValAspAsnAlaGluAspPheThrGluAsnLeuTyrValMetLeuAlaSerValVa : 75 ||||||!:! !|||||||||!:!||||||||||||:!!! !||| ! !:!! ValAspSerGlnGluAspPheSerGluAsnLeuTyrIleThrLeuIleLeuMetCy 3152588 : GTGGACAGTCAGGAGGATTTCAGCGAGAATCTGTATATCACGTTGATACTGATGTG : 3152644 76 : lSerCysSerLysMetLeuSerLeuLeuValAsnArgArgAsnIleTyrAlaLeuT : 94 !||||||!!!|||!!:! !! !|||:!!..!::! !!:!...||| ! !.!:!!. sSerCysCysLysIleTyrMetLeuValThrSerAlaLysGlyIleLysValMetV 3152645 : CAGCTGTTGCAAAATCTACATGCTGGTCACTTCTGCGAAGGGGATCAAAGTTATGG : 3152701 95 : hrAsnIleLeuIleGluLysProHisLysProLeuGlnIleAspGluIleLysIle : 112 .!:!!:!!||| !|||:!!||| ! !|||:!!.!.! !!!:|||! !:!!||| alAspValLeuArgGluGluProPheValProMetAsnArgGluGluAsnGluIle 3152702 : TGGACGTCCTTCGAGAGGAGCCTTTCGTGCCTATGAACAGAGAAGAGAACGAGATT : 3152755 113 : GlnTyrLysPheAsnLysLeuIleGlnAsnLys : 123 ::! !:!|||.!.:!! !|||:!!!:!||| ArgValArgPheGluGluLysIleGluSerLys 3152756 : AGAGTGAGATTCGAGGAGAAAATCGAGAGTAAG : 3152790 vulgar: CbirOr189 0 123 . KQ414646.1 3152421 3152790 + 220 M 123 369 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3152422 3152790 220 + . gene_id 6 ; sequence CbirOr189 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3152422 3152790 . + . KQ414646.1 exonerate:protein2genome:local exon 3152422 3152790 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3152422 3152790 220 + . alignment_id 6 ; Query CbirOr189 ; Align 3152422 1 369 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr189 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 215 Query range: 231 -> 354 Target range: 3174931 -> 3175371 232 : PheAlaTyrAlaHisLysLeuAsnAsnGluPheArgMetThrIleAlaMetGlnPh : 250 ||| !!:!|||.!.! :!!||| :!!|||!!!!!:|||!!:|||! !||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3174932 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3174986 251 : eIleValSerThrMetValValCysSerAsnLeuTyrGlnMetThrLysSerThrT : 269 |:!:|||!!!||||||..!:!!|||! !||||||!:!!:!:!!|||:!! |||! eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGln---ThrL 3174987 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAG---ACCA : 3175040 270 : hrAlaAsnAlaSerTyrLeuProLeuLeuLeuTyrMetSerCysMetMetThrGln : 287 !!.! !!:!!..! !||| !!|||:!!! !!:!||| ! !!:!!.!..!!||| ysValTyrSerGlnValLeuAlaLeuIleProPheMetValSerValPheAlaGln 3175041 : AGGTGTATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAG : 3175094 288 : IlePheIleTyrCysTrpTyrGlyAsnGluValLysLeuLys{Se} >>>> Tar : 302 |||||| !! !||||||||||||||||||..!|||:!!|||{ } IlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys{Va}-- 3175095 : ATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG{GT}ac........ : 3175143 303 : get Intron 1 >>>> {r}IleGlnLeuValAspAsnIlePheAlaMetAspT : 314 74 bp {!}:!!:!!:!! !|||!..:!!|||! !! :!!| ++{l}LeuGluIleCysAspThrValPheGluSerAsnT 3175144 : .................ag{C}CTTGAAATTTGCGACACAGTATTCGAAAGCAACT : 3175249 315 : rpLeuThrLeuAspArgAsnValThrArgGlyLeuLeuIleIleMetAsnArgAla : 332 || !.!!|||..!!:!!:!..!! !!:! !||||||! |||||| |||:!! rpThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgSer 3175250 : GGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCG : 3175303 333 : ThrIleProIleGluPheThrSerGlyTyrValPheSerMetAsnLeuAspSerPh : 351 !! |||||||||||||||.!!!.!!:!|||||| !!:!:||||||!!:||||| LeuLysProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSerPh 3175304 : TTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTT : 3175360 352 : eValGlyIle : 354 | !.!!:!! eLysSerVal 3175361 : TAAAAGTGTT : 3175371 vulgar: CbirOr189 231 354 . KQ414646.1 3174931 3175371 + 215 M 35 105 G 1 0 M 34 102 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174932 3175371 215 + . gene_id 7 ; sequence CbirOr189 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3174932 3175140 . + . KQ414646.1 exonerate:protein2genome:local exon 3174932 3175140 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3175141 3175142 . + . intron_id 1 ; splice_site "AC" KQ414646.1 exonerate:protein2genome:local intron 3175141 3175214 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3175213 3175214 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3175215 3175371 . + . KQ414646.1 exonerate:protein2genome:local exon 3175215 3175371 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3174932 3175371 215 + . alignment_id 7 ; Query CbirOr189 ; Align 3174932 232 105 ; Align 3175037 268 102 ; Align 3175216 303 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr189 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 206 Query range: 237 -> 354 Target range: 3160738 -> 3161160 238 : LeuAsnAsnGluPheArgMetThrIleAlaMetGlnPheIleValSerThrMetVa : 256 :!!||| :!!|||!!!!!:|||!!:|||! !||||||:!:|||!!!||||||.. IleAsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValThrThrMetTh 3160739 : ATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGAC : 3160793 257 : lValCysSerAsnLeuTyrGlnMetThrLysSerThrThrAlaAsnAlaSerTyrL : 275 !:!!|||! !||||||!:!!:!:!!|||:!! |||! !!.! !!:!!..! !| rMetCysPheAsnLeuPheArgLeuThrGln---ThrLysValTyrSerGlnValL 3160794 : AATGTGCTTCAACCTCTTTCGACTGACACAG---ACCAAGGTGTATTCGCAAGTTT : 3160847 276 : euProLeuLeuLeuTyrMetSerCysMetMetThrGlnIlePheIleTyrCysTrp : 293 || !!|||:!!! !!:!||| ! !!:!!.!..!!||||||||| !! !|||||| euAlaLeuIleProPheMetValSerValPheAlaGlnIlePheTyrCysCysTrp 3160848 : TAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGG : 3160901 294 : TyrGlyAsnGluValLysLeuLys{Se} >>>> Target Intron 1 >>>> : 302 ||||||||||||..!|||:!!|||{ } 74 bp TyrGlyAsnGluThrLysValLys{Va}-- + 3160902 : TATGGAAACGAGACCAAAGTGAAG{GT}ac.........................a : 3161002 303 : {r}IleGlnLeuValAspAsnIlePheAlaMetAspTrpLeuThrLeuAspArgA : 320 {!}:!!:!!:!! !|||!..:!!|||! !! :!!||| !.!!|||..!!:!! +{l}LeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnS 3161003 : g{C}CTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGA : 3161056 321 : snValThrArgGlyLeuLeuIleIleMetAsnArgAlaThrIleProIleGluPhe : 338 :!..!! !!:! !||||||! |||||| |||:!! !! |||||||||||| erThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPhe 3161057 : GCACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTC : 3161110 339 : ThrSerGlyTyrValPheSerMetAsnLeuAspSerPheValGlyIle : 354 |||.!!!.!!:!|||||| !!:!:||||||!!:|||||| !.!!:!! ThrGlyAlaPheValPheProValAsnLeuGluSerPheLysSerVal 3161111 : ACCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAAAGTGTT : 3161160 vulgar: CbirOr189 237 354 . KQ414646.1 3160738 3161160 + 206 M 29 87 G 1 0 M 34 102 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160739 3161160 206 + . gene_id 8 ; sequence CbirOr189 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3160739 3160929 . + . KQ414646.1 exonerate:protein2genome:local exon 3160739 3160929 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3160930 3160931 . + . intron_id 1 ; splice_site "AC" KQ414646.1 exonerate:protein2genome:local intron 3160930 3161003 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3161002 3161003 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3161004 3161160 . + . KQ414646.1 exonerate:protein2genome:local exon 3161004 3161160 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160739 3161160 206 + . alignment_id 8 ; Query CbirOr189 ; Align 3160739 238 87 ; Align 3160826 268 102 ; Align 3161005 303 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr189 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 182 Query range: 126 -> 236 Target range: 3160071 -> 3160407 127 : TyrThrIleLeuValGluThrThrCysAlaCysIleThrMetThrSerLeuPheTh : 145 ||||||:!!! !..!! ! !!:!....!! !!:!! !||| !||| !.!.|| TyrThrValCysThrValLeuSerAlaThrGlyValTrpMetLeuSerAlaMetTh 3160072 : TATACGGTTTGTACAGTACTGAGCGCGACTGGTGTATGGATGTTGTCGGCCATGAC : 3160126 146 : rGluPheArgLysGlyAsnLeuThrTyrArgAlaTrpLeuProTyrAsnTyrSerS : 164 |! !||||||! !!.!.||| !! !|||!.!|||||||||!:!:!!|||!!!: rAlaPheArgIleArgGluLeuProLeuArgValTrpLeuProPheAspTyrArgA 3160127 : GGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGGTTACCTTTCGATTATAGAG : 3160183 165 : erThrIle<->ValPheCysPheThrTyrAlaHisGlnLeuLeuSerLeuThrAla : 181 !!|||:!: :!!||| !!.!!|||||||||:!!|||!!!:!!!!!|||! ! ! laThrLeuGlyIlePheSerLeuThrTyrAlaTyrGlnPheValThrLeuIlePhe 3160184 : CCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAGTTTGTAACTCTGATATTC : 3160237 182 : GlySerLeuValAsnValAlaCysAspSerLeuIleCysGlyLeuLeuValHisIl : 200 !!!! !!.!! !:!!!.! !|||!:!|||.!! !!|||||||||:!!||||| IleThrThrAlaIleMetGlyThrAspAsnLeuPheSerGlyLeuLeuIleHisIl 3160238 : ATTACTACCGCGATTATGGGTACTGACAATCTATTCAGCGGACTGTTGATCCACAT : 3160294 201 : eCysCysGlnIleGluIleLeuGluTyrArgLeuSerLysLeuSerArgAspHisA : 219 |! !||||||.!!|||||||||:!!:!!||||||!.!!..:!!!.!! !|||...! eTyrCysGlnPheGluIleLeuGlnHisArgLeuLysSerIleLysProAspArgG 3160295 : TTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGAGCATTAAACCTGACAGGG : 3160351 220 : spVal<->LeuArgAspCysValLeuHisHisAspSerIlePheAlaTyrAlaHis : 236 !: ! !!:!.!.|||!.!!!!|||||| !! !!|||!:! !!:!...::: luTyrSerAlaLysGlnCysAlaPheHisHisTyrArgIleTyrLysPheValTyr 3160352 : AGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGCATATACAAGTTTgtctac : 3160405 vulgar: CbirOr189 126 236 . KQ414646.1 3160071 3160407 + 182 M 40 120 G 0 3 M 54 162 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160072 3160407 182 + . gene_id 9 ; sequence CbirOr189 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160072 3160407 . + . KQ414646.1 exonerate:protein2genome:local exon 3160072 3160407 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160072 3160407 182 + . alignment_id 9 ; Query CbirOr189 ; Align 3160072 127 120 ; Align 3160195 167 162 ; Align 3160360 221 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr189 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 136 -> 236 Target range: 3174311 -> 3174618 137 : CysIleThrMetThrSerLeuPheThrGluPheArgLysGlyAsnLeuThrTyrAr : 155 |||||| .!.:!!|||:!!||||||! |||!:!! !!.!.||| !! !|| CysIleTrpPheSerSerIlePheThrAlaPheLysIleArgGluLeuProLeuAr 3174312 : tgtatatggTTCTCGTCGATCTTCACGGCTTTTAAGATCAGAGAGTTACCCCTTCG : 3174366 156 : gAlaTrpLeu-ProTyrAsnTyrSerSerThrIle<->ValPheCysPheThrTyr : 172 |!.!||||||#|||!:!:!!|||!!!:!!|||:!: :!!||| !!.!!|||||| gGlyTrpLeu#ProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyr 3174367 : AGGATGGTTAACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTAC : 3174421 173 : AlaHisGlnLeuLeuSerLeuThrAlaGlySerLeuValAsnValAlaCysAspSe : 191 |||:!!|||!!!:!!!!!|||! ! ! !!!!! !!.!! !:!!!.!! !|||!: AlaTyrGlnPheValThrLeuIlePheLeuThrSerAlaIleIleGlySerAspAs 3174422 : GCTTATCAGTTTGTAACTCTGATATTCCTTACTTCTGCTATTATCGGTTCTGACAA : 3174478 192 : rLeuIleCysGlyLeuLeuValHisIleCysCysGlnIleGluIleLeuGluTyrA : 210 !|||.!! !!|||||||||:!!||||||! !||||||.!!|||||||||:!!:!!| nLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisA 3174479 : TCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATC : 3174535 211 : rgLeuSerLysLeuSerArgAspHisAspVal<->LeuArgAspCysValLeuHis : 227 |||||!.!!..:!!!.!! !|||...!!: ! !!:!.!.|||!.!!!!||| rgLeuLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHis 3174536 : GTCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCAT : 3174589 228 : HisAspSerIlePheAlaTyrAlaHis : 236 ||| !! !!|||!:! !!:!...::: HisTyrArgIleTyrLysPheValTyr 3174590 : CATTATCGCATATACAAGTTTgtctac : 3174618 vulgar: CbirOr189 136 236 . KQ414646.1 3174311 3174618 + 159 M 22 66 F 0 1 M 8 24 G 0 3 M 54 162 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174312 3174618 159 + . gene_id 10 ; sequence CbirOr189 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174312 3174618 . + . KQ414646.1 exonerate:protein2genome:local exon 3174312 3174618 . + . insertions 6 ; deletions 0 ; frameshifts 1 KQ414646.1 exonerate:protein2genome:local similarity 3174312 3174618 159 + . alignment_id 10 ; Query CbirOr189 ; Align 3174312 137 66 ; Align 3174379 159 24 ; Align 3174406 167 162 ; Align 3174571 221 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr189 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 230 -> 301 Target range: 3178378 -> 3178591 231 : IlePheAlaTyrAlaHisLysLeuAsnAsnGluPheArgMetThrIleAlaMetGl : 249 ||| !:!.!!!!.! !:!!|||!.!! !|||!:! ! !||| !:!!|| IleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLeuGl 3178379 : atttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCTGCA : 3178433 250 : nPheIleValSerThrMetValValCysSerAsnLeuTyrGlnMetThrLysSerT : 268 |||| !:!!|||:!!! !|||:!!|||! !!:!:!!|||:!!|||:!!! !! !! nPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrIleA 3178434 : ATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGATTA : 3178490 269 : hrThrAlaAsnAlaSerTyrLeuProLeuLeuLeuTyrMetSerCysMetMetThr : 286 .! !! !!:! !!:!!:!:!! !! ! !! !|||:!:!!!||||||:!:||| snProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeuThr 3178491 : ATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACG : 3178544 287 : GlnIlePheIleTyrCysTrpTyrGlyAsnGluValLysLeuLys : 301 |||:!:!:!:!!|||||||||!:!||||||||||||! !|||||| GlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys 3178545 : CAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: CbirOr189 230 301 . KQ414646.1 3178378 3178591 + 154 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178379 3178591 154 + . gene_id 11 ; sequence CbirOr189 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178379 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178379 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178379 3178591 154 + . alignment_id 11 ; Query CbirOr189 ; Align 3178379 231 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr189 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 126 -> 201 Target range: 3153129 -> 3153354 127 : TyrThrIleLeuValGluThrThrCysAlaCysIleThrMetThrSerLeuPheTh : 145 |||||| !!!!:!!!!:! ! ! !.! !:!! !!!:||||||! !||||| TyrThrTyrPheLeuAspIleLeuValValValLeuTrpIleThrSerTyrPheTh 3153130 : TACACATATTTCCTGGACATCTTGGTAGTCGTTTTATGGATAACATCGTACTTCAC : 3153184 146 : rGluPheArgLysGlyAsnLeuThrTyrArgAlaTrpLeuProTyrAsnTyrSerS : 164 |!!:!:!|||::: ...... :::|||..!||||||||||||:!! !!!!! rAspTyrArgArgArgLysPheLysPheArgValTrpLeuProTyrAspThrThrT 3153185 : GGACTACAGGcgcagaaaattcaaatttcgcgtCTGGTTACCTTACGACACTACTA : 3153241 165 : erThrIleValPheCysPheThrTyrAlaHisGlnLeuLeuSerLeuThrAlaGly : 182 !! ! !|||||| !.!.! !|||..!!!.|||:!!:!!!!! ! ! !.!! hrGlnProValPheThrLeuIleTyrCysGlnGlnIleValCysThrTrpTyrSer 3153242 : CACAACCTGTCTTCACTCTGATCTACTGTCAACAGATCGTCTGCACGTGGTACAGC : 3153295 183 : SerLeuValAsnValAlaCysAspSerLeuIleCysGlyLeuLeuValHisIleCy : 201 ! !:!!|||||| !||||||!!!|||.!! !!||||||:!!:!!!!.||||| ValAsnIleAsnValIleCysAspCysLeuPheSerGlyLeuMetIleGlnIleCy 3153296 : GTGAATATTAACGTCATTTGCGACTGCCTGTTCAGCGGCCTGATGATACAGATTTG : 3153352 202 : s : 201 | s 3153353 : C : 3153354 vulgar: CbirOr189 126 201 . KQ414646.1 3153129 3153354 + 142 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153130 3153354 142 + . gene_id 12 ; sequence CbirOr189 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153130 3153354 . + . KQ414646.1 exonerate:protein2genome:local exon 3153130 3153354 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153130 3153354 142 + . alignment_id 12 ; Query CbirOr189 ; Align 3153130 127 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr189 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 234 -> 297 Target range: 3153459 -> 3153645 235 : AlaHisLysLeuAsnAsnGluPheArgMetThrIleAlaMetGlnPheIleValSe : 253 |||!!.! !:!!|||.!.:!!.!! !!! ..! ::!!!:|||||| :!!|| AlaGlnIleValAsnGluLysLeuGlyAsnValSerSerIleGlnPheAlaIleSe 3153460 : GCGCAAATAGTGAACGAGAAGCTTGGAAATGTCTCGAGTATACAGTTCGCGATAAG : 3153514 254 : rThrMetValValCysSerAsnLeuTyrGlnMetThrLysSerThrThrAlaAsnA : 272 |||| !.!:!!|||! !|||||||||!:!|||:!! !! ! ! !..! rThrGlyAlaIleCysPheAsnLeuTyrArgMetSer---ValIleGluLeuGlyP 3153515 : CACAGGAGCGATATGCTTCAATCTCTATCGAATGTCG---GTGATAGAACTCGGTC : 3153568 273 : laSerTyrLeuProLeuLeuLeuTyrMetSerCysMetMetThrGlnIlePheIle : 290 !!!.!!:!:!! ! !||| ! !! !|||:!::!:.!!||||||||| ! roLysPheValGluAlaLeuThrIleThrValCysLeuLeuAlaGlnIlePheTyr 3153569 : CAAAGTTTGTGGAAGCGTTAACTATCACAGTATGCTTACTCGCGCAGATATTTTAC : 3153622 291 : TyrCysTrpTyrGlyAsnGlu : 297 ||||||||||||||||||::: TyrCysTrpTyrGlyAsnAsp 3153623 : TATTGTTGGTAcggtaacgat : 3153645 vulgar: CbirOr189 234 297 . KQ414646.1 3153459 3153645 + 110 M 31 93 G 1 0 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153460 3153645 110 + . gene_id 13 ; sequence CbirOr189 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153460 3153645 . + . KQ414646.1 exonerate:protein2genome:local exon 3153460 3153645 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3153460 3153645 110 + . alignment_id 13 ; Query CbirOr189 ; Align 3153460 235 93 ; Align 3153553 267 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr184 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 142 -> 213 Target range: 1946846 -> 1946633 143 : LeuLeuAspThrLeuLysGlyGluLeuProTyrAsnThrTrpValProTyrAspTy : 161 |||:!!||| ! !!!. !!:!!||| !!:!....!!|||:!!||||||||||| LeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrAspTy 1946846 : TTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACGATTA : 1946792 162 : rThrSerSerLeuSerLeuTrpLeuThrSerLeuGlnGluSerIleAlaValIleL : 180 |:!! !!:!!! !! !!!! ||||||! !:!!!!.:!!:!!||||||!.!! : rSerProAlaProIlePheIleLeuThrPheValHisGlnAlaIleAlaAlaThrI 1946791 : CTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCGACGA : 1946735 181 : euGlyThrPheIleAsnValAlaThrGluThrSerValLeuGlyPheCysLeuGln : 198 !! !! ! ! !:!|||.!!..!!!::!! ! ! !|||!!.! :!!.!. leCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLeuIleAsn 1946734 : TATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTGATTAAT : 1946681 199 : ThrCysAlaGlnLeuGluIleLeuLysHisArgLeuGlnArgMet : 213 ! !! !..!|||!!!|||||||||:!!|||||||||::!!.!:!: IleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnVal 1946680 : ATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTT : 1946634 vulgar: CbirOr184 142 213 . KQ414661.1 1946846 1946633 - 104 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946634 1946846 104 - . gene_id 1 ; sequence CbirOr184 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946634 1946846 . - . KQ414661.1 exonerate:protein2genome:local exon 1946634 1946846 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1946634 1946846 104 - . alignment_id 1 ; Query CbirOr184 ; Align 1946847 143 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr188CTE Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 592 Query range: 0 -> 299 Target range: 1947382 -> 1946053 1 : MetHisValLeuAspSerThrPheLysPheLeuThrIleCysGlyCysTrpArgPr : 19 ||| !|||||| ! ||||||! !!.|||! !|||! !||||||!::! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 1947382 : ATGAGCGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTATCTGCC : 1947328 20 : oAsnSerTrpThrSerSerCysLysSerMetIleTyrArgMetHisThrIlePheI : 38 |:!!|||||||||!!! !!! !:!!!!! :!:|||!.!!!::!! !:::||| oHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheS 1947327 : CCATTCGTGGACAACACCGTTCGAAAGGTCTTTGTACAATATCTACGGGGtgttct : 1947271 39 : leLeuAlaLeuValAsnThrPheThrLeuSerGlnLeuLeuAspIleIlePheIle : 56 ... |||:::::!!:!.!!..!|||||||||:!!||||||:!! .!!! ! erPheLeuLeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIleAsn 1947270 : cctttcttcttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCAAC : 1947217 57 : ValAspAsnAlaAspGluPheThrAspAsnPheTyrMetLeuLeuAlaMetPheVa : 75 |||!!:!:! !|||!!:|||!::||||||||| ::: ! !!.!:!!|||:! ValGluSerGlnAspAspPheSerAspAsnPheSerValThrAlaValValPheLe 1947216 : GTGGAGAGCCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTTCT : 1947160 76 : lSerCysCysLysMetLeuSerMetLeuIleAsnArgLysAsnIleThrMetLeuI : 94 !!!!!! ! !|||:!:! !! !:!:||||||...||| !|||.!!! !.!.|||| uThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuI 1947159 : CACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGA : 1947103 95 : leAsnIleValMetGluLysProCysLysProLeuGluProAspGluMetGluIle : 112 ||:!!! :!!..!.!.||||||! !..!|||:!!!!: !!!!:|||! |||||| leAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIle 1947102 : TCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATT : 1947049 113 : TyrHisLysPheAspLysSerAla{Gl} >>>> Target Intron 1 >>>> : 121 ||||||!!:|||! !.!!{:!} 107 bp ArgAlaLysPheGluLysIleThr{Gl}++ + 1947048 : AGAGCGAAATTCGAGAAGATCACC{GA}gt.........................a : 1946915 122 : {n}AlaThrThrIleHisTyrAlaIleLeuValGluSerThrCysValCysIleT : 139 {!} !!.!|||||| !||| !! |||::: ::: !!! !||| +{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleT 1946914 : g{A}TGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATAT : 1946861 140 : hrLeuThrSerLeuLeuThrAspTyrArgLysGlnAlaLeuThrPheArgAlaTrp : 157 !:!!! !|||||||||! !|||!:!!!!!!.::! !|||! !|||||||||||| yrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrp 1946860 : ACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGG : 1946807 158 : LeuProTyrAspTyrSerSerProIleLeuPheHisIleThrTyrValHisGlnLe : 176 :!!||||||||||||||| !! !! !:!!||| !:!!|||!:!||||||||| IleProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAl 1946806 : ATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGC : 1946750 177 : uIleSerLeuIleValGlySerValLeuHisValAlaCysAspGlyLeuIleCysG : 195 !|||:!! !! :!! !!!!!..!! ! !|||.!! |||..!||| ! !| aIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrG 1946749 : TATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTG : 1946693 196 : lyPheLeuValHisIleCysCysGlnIleGluIleLeuGluSerArgLeuArgArg : 213 ||!!.|||:!!:!!|||! !||||||.!!|||||||||||| !|||||||||!.! lyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsn 1946692 : GCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAAC : 1946639 214 : IleValCysGlu<->ProAspIleLeuArgAspCysIleLeuGlnHisAsnArgIl : 231 :!! ! !||| !||| !:!!!:!.!.||| !! !!!.|||:!!||||| ValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIl 1946638 : GTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTAT : 1946582 232 : ePhe{As} >>>> Target Intron 2 >>>> {n}PheAlaPheLeuValA : 239 |!:!{.!} 325 bp {.}|||:!! !|||| eTyr{Gl}++ ++{n}PheSerLysLysValA 1946581 : ATAC{CA}gt.........................ag{A}TTTTCGAAAAAGGTGA : 1946233 240 : snGluLysPheArgPheThrIleThrIleGlnPheIleValSerThrLeuValVal : 257 |||||:!!|||!:!.!.! !:!:! ! !|||||| !:!!|||! !! !|||:!! snGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIle 1946232 : ACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATC : 1946179 258 : CysPheAsnLeuTyrGlnLeuThrArgValThrThrSerAsnGluLysTyrMetGl : 276 |||||||||||||||!:!:!!|||!:!:!! ! !! !:!: |||:::::::: CysPheAsnLeuTyrArgMetThrGlnIle---LysMetAspThrLysPheValGl 1946178 : TGCTTCAATCTTTACCGAATGACACAGATC---AAAATGGAcacgaaattcgtcga : 1946125 277 : nLeuValLeuTyrMetCysCysMetLeuThrGlnIlePhePheTyrCysTrpTyrG : 295 :::::!!|||||| ! !|||! :!!||||||||||||!:!||||||||||||| uIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrG 1946124 : aatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACG : 1946068 296 : lyAsnGluValLys : 299 |||||||||||||| lyAsnGluValLys 1946067 : GCAACGAAGTGAAA : 1946054 vulgar: CbirOr188CTE 0 299 . KQ414661.1 1947382 1946053 - 592 M 120 360 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 96 288 G 0 3 M 15 45 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 34 102 G 1 0 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946054 1947382 592 - . gene_id 1 ; sequence CbirOr188CTE ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1947021 1947382 . - . KQ414661.1 exonerate:protein2genome:local exon 1947021 1947382 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1947019 1947020 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946914 1947020 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1946914 1946915 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946575 1946913 . - . KQ414661.1 exonerate:protein2genome:local exon 1946575 1946913 . - . insertions 3 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946573 1946574 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946250 1946574 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1946250 1946251 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946054 1946249 . - . KQ414661.1 exonerate:protein2genome:local exon 1946054 1946249 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946054 1947382 592 - . alignment_id 1 ; Query CbirOr188CTE ; Align 1947383 1 360 ; Align 1946913 122 288 ; Align 1946622 218 45 ; Align 1946249 234 102 ; Align 1946147 269 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr180 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 321 -> 382 Target range: 1945949 -> 1945692 322 : ValIleTyrGlnLeuAspTrpHisLeuLeuSerValSerGluLysLysAspLeuLe : 340 :!!|||!:!!!. !|||||| ! !|||!:! !!:!! ! !:!! ||||| MetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArgAlaLeuLe 1945949 : ATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGAGCACTTTT : 1945895 341 : uMetIleMetIleArgThrThrIleProIleLysPheThrSerSerPheLeuIleT : 359 |!!:!!:|||! !|||.!!..!! ||||||:!!|||||||||! ! !:!!:!!: uIleMetMetArgArgAlaValArgProIleGluPheThrSerIleHisValValS 1945894 : AATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCACGTTGTCT : 1945838 360 : hrLeuSerHisGluSerTyrSerAsn >>>> Target Intron 1 >>>> I : 368 !!:!!!:!! !||||||!:!! ! 74 bp : erValAsnLeuGluSerPheMetAla++ ++V 1945837 : CTGTGAATCTCGAATCCTTCATGGCAgt.........................agG : 1945737 369 : leLeuLysThrSerTyrSerAlaPheAsnLeuLeuGlnArgSer : 382 !!:!!||||||||||||||||||||||||:!!:!!|||!:!||| alIleLysThrSerTyrSerAlaPheAsnMetIleGlnGlnSer 1945736 : TAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAACAAAGC : 1945693 vulgar: CbirOr180 321 382 . KQ414661.1 1945949 1945692 - 108 M 46 138 5 0 2 I 0 70 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945693 1945949 108 - . gene_id 1 ; sequence CbirOr180 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1945812 1945949 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1945949 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945693 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945693 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945693 1945949 108 - . alignment_id 1 ; Query CbirOr180 ; Align 1945950 322 138 ; Align 1945738 368 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr189 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 507 Query range: 122 -> 367 Target range: 1946909 -> 1945695 123 : LysThrPheTrpTyrThrIleLeuValGluThrThrCysAlaCysIleThrMetTh : 141 !!.|||.!! ! ||| !! |||::: ::: !! !||| !:!!! AsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrValAr 1946909 : AACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATATACGTGAG : 1946855 142 : rSerLeuPheThrGluPheArgLysGlyAsnLeuThrTyrArgAlaTrpLeuProT : 160 !||||||!!.! !!!:|||!!!!!. !!!!.|||! !!:!|||||||||:!!|||| gSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProT 1946854 : ATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCT : 1946798 161 : yrAsnTyrSerSerThrIleValPheCysPheThrTyrAlaHisGlnLeuLeuSer : 178 ||:!!|||||| !!.!! !:!!||| !.!!|||!:!!.!|||||| !:!!:!! yrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAlaIleAla 1946797 : ACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCC : 1946744 179 : LeuThrAlaGlySerLeuValAsnValAlaCysAspSerLeuIleCysGlyLeuLe : 197 !||| ! !!!!! ! !!:!|||.!! ||||||||| ! !|||||||| AlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLe 1946743 : GCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTT : 1946687 198 : uValHisIleCysCysGlnIleGluIleLeuGluTyrArgLeuSerLysLeuSerA : 216 |:!!:!!|||! !||||||.!!||||||||||||:!!||||||!!!!!.:!!!.!! uIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysT 1946686 : GATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAA : 1946630 217 : rgAspHis<->AspValLeuArgAspCysValLeuHisHisAspSerIlePhe{Al : 233 !!!:!!. ||| !:!!!:!.!.|||!.!! !||||||||| !!|||!:!{ hrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIleTyr{Gl 1946629 : CTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTATATAC{CA : 1946576 234 : } >>>> Target Intron 1 >>>> {a}TyrAlaHisLysLeuAsnAsnGl : 241 } 325 bp {!}!:!:!! ! |||:!!|||.!.|| }++ ++{n}PheSerLysLysValAsnGluGl 1946575 : }gt.........................ag{A}TTTTCGAAAAAGGTGAACGAAGA : 1946227 242 : uPheArgMetThrIleAlaMetGlnPheIleValSerThrMetValValCysSerA : 260 ||||!:!:!!! !:!: ! |||||| !:!!|||! ! !|||:!!|||! !| uPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIleCysPheA 1946226 : ATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTTCA : 1946170 261 : snLeuTyrGlnMetThrLysSerThrThrAlaAsnAlaSerTyrLeuProLeuLeu : 278 ||||||||!:!||||||:!! ! !! ! !:!:......:::::: ::::!! snLeuTyrArgMetThrGln---IleLysMetAspThrLysPheValGluIleIle 1946169 : ATCTTTACCGAATGACACAG---ATCAAAATGGAcacgaaattcgtcgaaatcaTA : 1946119 279 : LeuTyrMetSerCysMetMetThrGlnIlePheIleTyrCysTrpTyrGlyAsnGl : 297 |||||| ! !|||! !!:|||||||||||| !|||||||||||||||||||| LeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGl 1946118 : CTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGGCAACGA : 1946062 298 : uValLysLeuLys >>>> Target Intron 2 >>>> SerIleGlnLeuVa : 306 ||||||| !||| 80 bp |||:!!|||||| uValLysAspLys++ ++SerLeuGlnLeuPr 1946061 : AGTGAAAGATAAGgt.........................agAGCCTCCAACTTCC : 1945955 307 : lAspAsnIlePheAlaMetAspTrpLeuThrLeuAspArgAsnValThrArgGlyL : 325 ! !!! |||||| !! |||||| !:!!|||:!!!.!||||||||||||!.!| oTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArgAlaL 1945954 : ATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGAGCAC : 1945898 326 : euLeuIleIleMetAsnArgAlaThrIleProIleGluPheThrSerGlyTyrVal : 343 ||||||||!!:|||!..||||||..!! |||||||||||||||||| !:!!||| euLeuIleMetMetArgArgAlaValArgProIleGluPheThrSerIleHisVal 1945897 : TTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCACGTT : 1945844 344 : PheSerMetAsnLeuAspSerPheValGly >>>> Target Intron 3 >>> : 354 !!|||:!!||||||!!:||||||:!!!.! 74 bp ValSerValAsnLeuGluSerPheMetAla++ 1945843 : GTCTCTGTGAATCTCGAATCCTTCATGGCAgt........................ : 1945809 355 : > IleLeuLysThrSerTyrSerAlaTyrAsnIleLeuLysLys : 367 :!!:!!||||||||||||||||||!:!|||!!::!!:!!:!! ++ValIleLysThrSerTyrSerAlaPheAsnMetIleGlnGln 1945808 : .agGTAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAACAA : 1945696 vulgar: CbirOr189 122 367 . KQ414661.1 1946909 1945695 - 507 M 96 288 G 0 3 M 14 42 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 33 99 G 1 0 M 34 102 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945696 1946909 507 - . gene_id 1 ; sequence CbirOr189 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1946575 1946909 . - . KQ414661.1 exonerate:protein2genome:local exon 1946575 1946909 . - . insertions 3 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946573 1946574 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946250 1946574 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1946250 1946251 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946048 1946249 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946249 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local splice5 1946046 1946047 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945968 1946047 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1945968 1945969 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945812 1945967 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1945967 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 3 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 3 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 2 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945696 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945696 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945696 1946909 507 - . alignment_id 1 ; Query CbirOr189 ; Align 1946910 123 288 ; Align 1946619 219 42 ; Align 1946249 234 99 ; Align 1946150 268 102 ; Align 1945968 302 156 ; Align 1945738 354 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr189 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 147 Query range: 301 -> 367 Target range: 1948618 -> 1948287 302 : SerIleGlnLeuValAspAsnIlePheAlaMetAspTrpLeuThrLeuAspArgAs : 320 |||:!!:!!:!! !:!!! |||||| !:!:|||||| ! !!!!!|||!:! SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 1948618 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 1948564 321 : nValThrArgGlyLeuLeuIleIleMetAsnArgAlaThrIleProIleGluPheT : 339 !..!! !|||..!:!!|||! !!!:|||! ||||||:!! |||||||||.!!! aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 1948563 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 1948507 340 : hrSerGlyTyrValPheSerMetAsnLeuAspSerPheValGly >>>> Targe : 354 !|||! ! !|||.!!|||:!!||||||||||||||||||!.! leSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 1948506 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.......... : 1948460 355 : t Intron 1 >>>> IleLeuLysThrSerTyrSerAlaTyrAsnIleLeuLys : 366 133 bp :!:|||||||||||||||||||||||||||:!!|||:!! ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGln 1948459 : ...............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAA : 1948293 367 : Lys : 367 ::: Arg 1948292 : CGC : 1948288 vulgar: CbirOr189 301 367 . KQ414661.1 1948618 1948287 - 147 M 52 156 5 0 2 I 0 129 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948288 1948618 147 - . gene_id 2 ; sequence CbirOr189 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1948463 1948618 . - . KQ414661.1 exonerate:protein2genome:local exon 1948463 1948618 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1948461 1948462 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1948330 1948462 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1948330 1948331 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1948288 1948329 . - . KQ414661.1 exonerate:protein2genome:local exon 1948288 1948329 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948288 1948618 147 - . alignment_id 2 ; Query CbirOr189 ; Align 1948619 302 156 ; Align 1948330 354 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr183 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 316 -> 383 Target range: 1945967 -> 1945692 317 : SerThrSerIleGlyAsnAlaValTyrGluMetAsnTrpThrLeuLeuSerIleSe : 335 ||| !..!:!! ! !! !:!!!:!.!.! :!!||||||! !|||!:!! !!: SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAs 1945967 : AGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAA : 1945913 336 : rGluLysArgAspLeuLeuMetIleMetLysArgSerSerMetProIleLysPheT : 354 !! ! |||! ||||||!!:!!:|||!:!|||:!! !! !||||||:!!|||| nValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheT 1945912 : CGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCA : 1945856 355 : hrSerSerPheLeuIleThrPheSerLeuGluSerTyrSerAsn >>>> Targe : 369 |||||! ! !:!!:!!:!! ! !:!|||||||||!:!! ! hrSerIleHisValValSerValAsnLeuGluSerPheMetAla++ 1945855 : CCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt.......... : 1945809 370 : t Intron 1 >>>> IleLeuLysThrSerTyrSerAlaPheAsnIleLeuGln : 381 74 bp :!!:!!||||||||||||||||||||||||!!::!!||| ++ValIleLysThrSerTyrSerAlaPheAsnMetIleGln 1945808 : ...............agGTAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAA : 1945701 382 : ArgSer : 383 !:!||| GlnSer 1945700 : CAAAGC : 1945693 vulgar: CbirOr183 316 383 . KQ414661.1 1945967 1945692 - 122 M 52 156 5 0 2 I 0 70 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945693 1945967 122 - . gene_id 1 ; sequence CbirOr183 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1945812 1945967 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1945967 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945693 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945693 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945693 1945967 122 - . alignment_id 1 ; Query CbirOr183 ; Align 1945968 317 156 ; Align 1945738 369 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr182 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 316 -> 383 Target range: 1945967 -> 1945692 317 : SerThrSerIleGlyAsnAlaIleTyrGluMetAsnTrpThrLeuLeuSerIleSe : 335 ||| !..!:!! ! !! !|||!:!.!.! :!!||||||! !|||!:!! !!: SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAs 1945967 : AGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAA : 1945913 336 : rGluLysArgAspLeuLeuMetIleMetLysArgSerAlaIleProIleLysPheT : 354 !! ! |||! ||||||!!:!!:|||!:!|||:!!!.!! ||||||:!!|||| nValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheT 1945912 : CGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCA : 1945856 355 : hrSerSerPheLeuIleThrPheSerLeuGluAlaTyrSerSer >>>> Targe : 369 |||||! ! !:!!:!!:!! ! !:!||||||:!!!:!! !:!! hrSerIleHisValValSerValAsnLeuGluSerPheMetAla++ 1945855 : CCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt.......... : 1945809 370 : t Intron 1 >>>> IleLeuLysThrSerTyrSerAlaPheAsnValLeuGln : 381 74 bp :!!:!!||||||||||||||||||||||||:!!:!!||| ++ValIleLysThrSerTyrSerAlaPheAsnMetIleGln 1945808 : ...............agGTAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAA : 1945701 382 : GlnSer : 383 |||||| GlnSer 1945700 : CAAAGC : 1945693 vulgar: CbirOr182 316 383 . KQ414661.1 1945967 1945692 - 127 M 52 156 5 0 2 I 0 70 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945693 1945967 127 - . gene_id 1 ; sequence CbirOr182 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1945812 1945967 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1945967 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945693 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945693 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945693 1945967 127 - . alignment_id 1 ; Query CbirOr182 ; Align 1945968 317 156 ; Align 1945738 369 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr177 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 134 Query range: 250 -> 316 Target range: 1946251 -> 1946056 251 : ArgPheAlaAspArgValThrAlaValPheThrLeuMetIleLeuLeuGlnPheTh : 269 ||||||:!! ! !:!|||!.!! !! !|||! !|||!!::!::!!! !|||||| ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 1946251 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 1946197 270 : rIleSerSerThrValLeuCysLeuSerValTyrGluMetSerLysLysAsnLeuL : 288 !||||||! !:!!|||:!!|||!!!!:!:!!|||..!|||!!!:!!! !!. : sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---M 1946196 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---A : 1946143 289 : euSerPheGluPheAlaTrpSerSerLeuTyrLeuGlyCysMetLeuMetGlnIle : 306 !!... :::|||... !||||||! ! !|||! :!!! !|||||| etAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 1946142 : TGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 1946089 307 : PheLeuTyrCysTrpPheGlyAsnGluVal : 316 |||! !|||||||||!:!|||||||||||| PheTyrTyrCysTrpTyrGlyAsnGluVal 1946088 : TTTTACTATTGCTGGTACGGCAACGAAGTG : 1946057 vulgar: CbirOr177 250 316 . KQ414661.1 1946251 1946056 - 134 M 36 108 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946057 1946251 134 - . gene_id 1 ; sequence CbirOr177 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946057 1946251 . - . KQ414661.1 exonerate:protein2genome:local exon 1946057 1946251 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946057 1946251 134 - . alignment_id 1 ; Query CbirOr177 ; Align 1946252 251 108 ; Align 1946144 288 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr187 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 750 Query range: 0 -> 367 Target range: 1947382 -> 1945695 1 : MetHisIleLeuGluLysThrPheIleIleLeuThrIleCysGlyCysTrpArgPr : 19 ||| !:!!|||:!!...|||! :!!:!:|||! !|||! !||||||!::! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 1947382 : ATGAGCGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTATCTGCC : 1947328 20 : oAsnSerTrpThrSerLeuTyrLysArgIleLeuTyrHisMetTyrThrValPheI : 38 |:!!|||||||||!!!! !!:!:!!||| !||||||:!!!!:||| !|||||| oHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheS 1947327 : CCATTCGTGGACAACACCGTTCGAAAGGTCTTTGTACAATATCTACGGGGtgttct : 1947271 39 : lePheValLeuValAsnSerPheThrLeuSerGlnLeuLeuAspIleIleLeuIle : 56 |||:::|||:::::!|||.!!..!|||||||||:!!||||||:!! :!!! ! erPheLeuLeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIleAsn 1947270 : cctttcttcttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCAAC : 1947217 57 : ValAspAsnSerAspAspPheSerAspAsnPheTyrThrLeuLeuAlaMetIleVa : 75 |||!!:!:!..!||||||||||||||||||||| ... ! !!.!:!!.!!:! ValGluSerGlnAspAspPheSerAspAsnPheSerValThrAlaValValPheLe 1947216 : GTGGAGAGCCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTTCT : 1947160 76 : lSerSerCysLysMetPheSerLeuLeuIleAsnArgAsnAsnIleAlaMetLeuI : 94 !!!!!!!! !|||:!:! !! !|||||||||...|||...|||.!! !.!.|||| uThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuI 1947159 : CACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGA : 1947103 95 : leAsnIleLeuMetGluLysProCysLysProPheArgLeuAsnGluValGluIle : 112 ||:!!! |||..!.!.||||||! !..!||| ! ! !.!.||| !|||||| leAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIle 1947102 : TCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATT : 1947049 113 : TyrHisArgPheAspLysSerIle{Gl} >>>> Target Intron 1 >>>> : 121 !:!|||!!:|||! !! !{:!} 107 bp ArgAlaLysPheGluLysIleThr{Gl}++ + 1947048 : AGAGCGAAATTCGAGAAGATCACC{GA}gt.........................a : 1946915 122 : {n}ThrAsnThrIleHisTyrAlaIleLeuValGluThrThrCysIleSerValA : 139 {!} !||||||||| !||| !! |||::: ::: .!!! !:!! +{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleT 1946914 : g{A}TGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATAT : 1946861 140 : laIleThrSerLeuPheThrAsnPheAsnLysArgIleLeuThrPheArgAlaTrp : 157 !:!:! !||||||!!.! !:!!|||!:!!!.|||! !|||! !|||||||||||| yrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrp 1946860 : ACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGG : 1946807 158 : LeuProTyrAspTyrSerLeuProIleLeuPheTyrIleThrTyrIleHisGlnLe : 176 :!!|||||||||||||||! ! !! !:!!||| !:!!|||!:!:!!|||||| IleProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAl 1946806 : ATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGC : 1946750 177 : uIleGlyPheIleMetGlySerIleLeuHisLeuAlaCysAspGlyLeuIlePheG : 195 !|||!.! ! !!: !!!!!! !! ! !:!!.!! |||..!||| ! !| aIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrG 1946749 : TATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTG : 1946693 196 : lyLeuLeuValHisIleTyrGlyGlnIleGluIleLeuGluSerArgLeuArgArg : 213 ||||||||:!!:!!|||||| !!|||.!!|||||||||||| !|||||||||!.! lyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsn 1946692 : GCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAAC : 1946639 214 : Ile<->ThrHisGluProAspIleLeuArgGluCysIleLeuGlnHisAsnArgIl : 231 :!! |||.!.:!! !||| !:!!!:!:!!||| !! !!!.|||:!!||||| ValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIl 1946638 : GTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTAT : 1946582 232 : eLeu{Ly} >>>> Target Intron 2 >>>> {s}PheAlaValLeuIleA : 239 |! !{:!} 325 bp {!}|||:!! ! !:!:| eTyr{Gl}++ ++{n}PheSerLysLysValA 1946581 : ATAC{CA}gt.........................ag{A}TTTTCGAAAAAGGTGA : 1946233 240 : snGluLysPheArgPheIleLeuSerIleGlnPheValValSerThrLeuValVal : 257 |||||:!!|||!:!.!.||||||! ! !|||||| !:!!|||! !! !|||:!! snGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIle 1946232 : ACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATC : 1946179 258 : CysPheAsnLeuPheGlnIleThrLysThrThrThrSerSerAlaLysTyrIleGl : 276 ||||||||||||!:!!:!!!:|||:!!! !! !! !...::: |||:::::::: CysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThr---LysPheValGl 1946178 : TGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacg---aaattcgtcga : 1946125 277 : nLeuAlaLeuTyrMetSerSerMetLeuThrGlnIlePhePheTyrCysTrpTyrG : 295 :::: !|||||| ! !!!!! :!!||||||||||||!:!||||||||||||| uIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrG 1946124 : aatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACG : 1946068 296 : lyAsnGluValLysLeuLys >>>> Target Intron 3 >>>> SerArgG : 304 |||||||||||||| !||| 80 bp |||! !| lyAsnGluValLysAspLys++ ++SerLeuG 1946067 : GCAACGAAGTGAAAGATAAGgt.........................agAGCCTCC : 1945961 305 : lnLeuSerAsnAsnIlePheGluMetGluTrpSerThrLeuAspSerArgValLys : 322 ||||| !! !!! ||||||.!.! !!:|||!!!:!!|||:!!!:!!.!|||! lnLeuProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThr 1945960 : AACTTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACC : 1945907 323 : LysThrLeuLeuLeuIleMetArgArgSerThrValProIleGluPheThrSerSe : 341 !:!.!!||||||:!!!!:|||||||||:!!..! !||||||||||||||||||! ArgAlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheThrSerIl 1945906 : AGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTAT : 1945850 342 : rTyrIleIlePheMetAsnLeuAspSerPheValGly >>>> Target Intro : 354 !:!!:!!:!!! !:!!||||||!!:||||||:!!!.! 74 bp eHisValValSerValAsnLeuGluSerPheMetAla++ 1945849 : TCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt................. : 1945809 355 : n 4 >>>> LeuLeuLysThrSerTyrSerAlaTyrAsnIleLeuGlnGln : 367 :!!:!!||||||||||||||||||!:!|||!!::!!|||||| ++ValIleLysThrSerTyrSerAlaPheAsnMetIleGlnGln 1945808 : ........agGTAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAACAA : 1945696 vulgar: CbirOr187 0 367 . KQ414661.1 1947382 1945695 - 750 M 120 360 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 93 279 G 0 3 M 18 54 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 38 114 G 1 0 M 29 87 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945696 1947382 750 - . gene_id 1 ; sequence CbirOr187 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1947021 1947382 . - . KQ414661.1 exonerate:protein2genome:local exon 1947021 1947382 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1947019 1947020 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946914 1947020 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1946914 1946915 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946575 1946913 . - . KQ414661.1 exonerate:protein2genome:local exon 1946575 1946913 . - . insertions 3 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946573 1946574 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946250 1946574 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1946250 1946251 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946048 1946249 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946249 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local splice5 1946046 1946047 . - . intron_id 3 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945968 1946047 . - . intron_id 3 KQ414661.1 exonerate:protein2genome:local splice3 1945968 1945969 . - . intron_id 2 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945812 1945967 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1945967 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 4 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 4 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 3 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945696 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945696 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945696 1947382 750 - . alignment_id 1 ; Query CbirOr187 ; Align 1947383 1 360 ; Align 1946913 122 279 ; Align 1946631 215 54 ; Align 1946249 234 114 ; Align 1946135 273 87 ; Align 1945968 302 156 ; Align 1945738 354 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr187 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 155 Query range: 301 -> 367 Target range: 1948618 -> 1948287 302 : SerArgGlnLeuSerAsnAsnIlePheGluMetGluTrpSerThrLeuAspSerAr : 320 |||! !:!!:!!||||||! ||||||.!.:!:!!:|||!!! !!!!!|||!.! SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 1948618 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 1948564 321 : gValLysLysThrLeuLeuLeuIleMetArgArgSerThrValProIleGluPheT : 339 !..!|||::!!.!:!!||| !!!:|||! !|||:!!:!! !|||||||||.!!! aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 1948563 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 1948507 340 : hrSerSerTyrIleIlePheMetAsnLeuAspSerPheValGly >>>> Targe : 354 !||| ! !:!::!!! !:!!||||||||||||||||||!.! leSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 1948506 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.......... : 1948460 355 : t Intron 1 >>>> LeuLeuLysThrSerTyrSerAlaTyrAsnIleLeuGln : 366 133 bp ||||||||||||||||||||||||||||||:!!|||||| ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGln 1948459 : ...............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAA : 1948293 367 : Gln : 367 !:: Arg 1948292 : CGC : 1948288 vulgar: CbirOr187 301 367 . KQ414661.1 1948618 1948287 - 155 M 52 156 5 0 2 I 0 129 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948288 1948618 155 - . gene_id 2 ; sequence CbirOr187 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1948463 1948618 . - . KQ414661.1 exonerate:protein2genome:local exon 1948463 1948618 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1948461 1948462 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1948330 1948462 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1948330 1948331 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1948288 1948329 . - . KQ414661.1 exonerate:protein2genome:local exon 1948288 1948329 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948288 1948618 155 - . alignment_id 2 ; Query CbirOr187 ; Align 1948619 302 156 ; Align 1948330 354 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr186PC Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 594 Query range: 0 -> 298 Target range: 1947382 -> 1946047 1 : MetArgIleLeuGlyPheThrPheLysIleLeuMetSerCysGlyCysTrpIlePr : 19 |||!!!:!!||| !! !|||! :!:|||! ! !! !||||||!:::!:|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 1947382 : ATGAGCGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTATCTGCC : 1947328 20 : oAsnSerTrpArgSerProHisArgArgLeuMetTyrHisValTyrThrIlePheI : 38 |:!!||||||! !!!!||| !..!|||! !:!!|||:!!:!!||| !:::||| oHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheS 1947327 : CCATTCGTGGACAACACCGTTCGAAAGGTCTTTGTACAATATCTACGGGGtgttct : 1947271 39 : leLeuMetLeuIleAsnThrPheThrLeuSerGlnPheLeuAspIleIleLeuThr : 56 ...:::|||:::::!!:!.!!..!|||||||||.!.||||||:!! :!!!.! erPheLeuLeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIleAsn 1947270 : cctttcttcttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCAAC : 1947217 57 : ValAspAsnAlaAspAspPheThrAspAsnPheTyrMetMetLeuAlaMetIleVa : 75 |||!!:!:! !|||||||||!::||||||||| ::: !!.!:!!.!!:! ValGluSerGlnAspAspPheSerAspAsnPheSerValThrAlaValValPheLe 1947216 : GTGGAGAGCCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTTCT : 1947160 76 : lSerCysPheLysMetPheSerLeuLeuIleAsnArgGlyAsnIleAlaMetLeuT : 94 !!!!!! ||||||:!:! !! !|||||||||...|||||||||.!! !.!.|||! uThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuI 1947159 : CACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGA : 1947103 95 : hrAspIleLeuMetLysGlyProCysLysProLeuGluGlnGluGluIleGluIle : 112 !|||! |||..!!!. !|||! !..!|||:!!!!: !||||||! !|||||| leAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIle 1947102 : TCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATT : 1947049 113 : ArgGlnLysPheAspLysLeuIle{Gl} >>>> Target Intron 1 >>>> : 121 ||| !||||||!!:|||:!!! !{||} 107 bp ArgAlaLysPheGluLysIleThr{Gl}++ + 1947048 : AGAGCGAAATTCGAGAAGATCACC{GA}gt.........................a : 1946915 122 : {u}ThrAsnThrLeuHisTyrMetIleLeuValGluLeuThrCysAlaSerThrA : 139 {|} !||||||:!! !||| !! |||::: :::::: !! !! ! +{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleT 1946914 : g{A}TGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATAT : 1946861 140 : laValAlaSerLeuPheThrAspTyrArgLysThrGlnLeuThrPheArgAlaTrp : 157 !||| !||||||!!.! !|||!:!!!!!!.! !:!!|||! !|||||||||||| yrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrp 1946860 : ACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGG : 1946807 158 : LeuProPheAsnTyrSerSerThrMetLeuTyrHisPheThrTyrPheHisGlnLe : 176 :!!|||!:!:!!|||||| !!.!! :!!!:! !.!!|||!:! !!|||||| IleProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAl 1946806 : ATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGC : 1946750 177 : uIleSerLeuThrValGlySerValLeuHisValAlaCysAspGlyLeuIleCysG : 195 !|||:!! !|||:!! !!!!!..!! ! !|||.!! |||..!||| ! !| aIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrG 1946749 : TATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTG : 1946693 196 : lyLeuLeuLeuHisIleCysCysGlnMetGluIleLeuSerTyrArgLeuLysLys : 213 ||||||||:!!:!!|||! !||||||.!.|||||||||..!:!!||||||!:!!!. lyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsn 1946692 : GCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAAC : 1946639 214 : IleValCys<->SerProGluArgIleArgAspCysValIleGlnHisAsnLeuIl : 231 :!! ! ! ..! !!!: !:!:!:!.!.|||!.! !!!.|||:!!! !|| ValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIl 1946638 : GTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTAT : 1946582 232 : ePhe{Ly} >>>> Target Intron 2 >>>> {s}PheAlaPheMetLeuA : 239 |!:!{:!} 325 bp {!}|||:!! ! !:!!| eTyr{Gl}++ ++{n}PheSerLysLysValA 1946581 : ATAC{CA}gt.........................ag{A}TTTTCGAAAAAGGTGA : 1946233 240 : snLysLysPheArgPheThrIleThrPheGlnPheLeuValSerThrLeuValVal : 257 ||:!!:!!|||!:!.!.! !:!:! !! !||||||! !:!!|||! !! !|||:!! snGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIle 1946232 : ACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATC : 1946179 258 : CysPheThrLeuTyrGlnLeuThr<-><->LysThrSerGlyLysPheValGluIl : 274 ||||||!.!||||||!:!:!!||| |||! !... |||||||||||||| CysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIl 1946178 : TGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaat : 1946122 275 : eGlyLeuTyrMetSerCysMetLeuThrGlnIlePheLeuTyrCysTrpTyrGlyA : 293 | !|||||| ! !|||! :!!||||||||||||! !|||||||||||||||| eIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyA 1946121 : caTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGGCA : 1946065 294 : snGluValLysLeuLys : 298 ||||||||||| !||| snGluValLysAspLys 1946064 : ACGAAGTGAAAGATAAG : 1946048 vulgar: CbirOr186PC 0 298 . KQ414661.1 1947382 1946047 - 594 M 120 360 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 95 285 G 0 3 M 16 48 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 32 96 G 0 6 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946048 1947382 594 - . gene_id 1 ; sequence CbirOr186PC ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1947021 1947382 . - . KQ414661.1 exonerate:protein2genome:local exon 1947021 1947382 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1947019 1947020 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946914 1947020 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1946914 1946915 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946575 1946913 . - . KQ414661.1 exonerate:protein2genome:local exon 1946575 1946913 . - . insertions 3 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946573 1946574 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946250 1946574 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1946250 1946251 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946048 1946249 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946249 . - . insertions 6 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1946048 1947382 594 - . alignment_id 1 ; Query CbirOr186PC ; Align 1947383 1 360 ; Align 1946913 122 285 ; Align 1946625 217 48 ; Align 1946249 234 96 ; Align 1946147 266 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr181 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 315 -> 381 Target range: 1948618 -> 1948287 316 : SerValLysValAlaAspIleIleTyrHisLeuAspTrpProLeuLeuSerValSe : 334 |||:!!:!!:!!:!!:!!!!:|||!:!|||||||||||| !!! !!!!..! !:! SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 1948618 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 1948564 335 : rGluLysLysAspLeuLeuIleIleMetIleArgSerArgIleProIleGlnPheT : 353 ! !|||::!:!!:!!|||! !!!:|||!!:|||:!! ! ||||||:!!.!!! aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 1948563 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 1948507 354 : hrSerSerPheLeuIleThrLeuSerHisGlnSerTyrSerAsn >>>> Targe : 368 !||| ! !:!!:!!:!!:!!!:!! !.!.|||!:! ! ! leSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 1948506 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.......... : 1948460 369 : t Intron 1 >>>> LeuLeuLysThrSerTyrSerAlaPheAsnLeuLeuGln : 380 133 bp ||||||||||||||||||||||||!:!|||:!!|||||| ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGln 1948459 : ...............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAA : 1948293 381 : Gln : 381 !:: Arg 1948292 : CGC : 1948288 vulgar: CbirOr181 315 381 . KQ414661.1 1948618 1948287 - 116 M 52 156 5 0 2 I 0 129 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948288 1948618 116 - . gene_id 1 ; sequence CbirOr181 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1948463 1948618 . - . KQ414661.1 exonerate:protein2genome:local exon 1948463 1948618 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1948461 1948462 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1948330 1948462 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1948330 1948331 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1948288 1948329 . - . KQ414661.1 exonerate:protein2genome:local exon 1948288 1948329 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948288 1948618 116 - . alignment_id 1 ; Query CbirOr181 ; Align 1948619 316 156 ; Align 1948330 368 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr181 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 315 -> 382 Target range: 1945967 -> 1945692 316 : SerValLysValAlaAspIleIleTyrHisLeuAspTrpProLeuLeuSerValSe : 334 |||:!!:!!:!! !! !!!!:|||!:!||| !|||||| !!! !|||!:! !!: SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAs 1945967 : AGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAA : 1945913 335 : rGluLysLysAspLeuLeuIleIleMetIleArgSerArgIleProIleGlnPheT : 353 !! ! !:!! |||||||||!!:|||! !|||:!! !! ||||||:!!|||| nValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheT 1945912 : CGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCA : 1945856 354 : hrSerSerPheLeuIleThrLeuSerHisGlnSerTyrSer >>>> Target I : 367 |||||! ! !:!!:!!:!!:!!!:!! !:!!|||!:!! ! 77 hrSerIleHisValValSerValAsnLeuGluSerPheMet+- 1945855 : CCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGgc............. : 1945812 368 : ntron 1 >>>> AsnLeuLeuLysThrSerTyrSerAlaPheAsnLeuLeuGln : 380 bp :!!:!!||||||||||||||||||||||||:!!:!!||| ++---ValIleLysThrSerTyrSerAlaPheAsnMetIleGln 1945811 : ............ag---GTAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAA : 1945701 381 : GlnSer : 382 |||||| GlnSer 1945700 : CAAAGC : 1945693 vulgar: CbirOr181 315 382 . KQ414661.1 1945967 1945692 - 100 M 51 153 5 0 2 I 0 73 3 0 2 G 1 0 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945693 1945967 100 - . gene_id 2 ; sequence CbirOr181 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1945815 1945967 . - . KQ414661.1 exonerate:protein2genome:local exon 1945815 1945967 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945813 1945814 . - . intron_id 1 ; splice_site "GC" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945814 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945693 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945693 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945693 1945967 100 - . alignment_id 2 ; Query CbirOr181 ; Align 1945968 316 153 ; Align 1945738 368 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr176 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 328 -> 387 Target range: 1395305 -> 1395482 329 : AsnGluLeuHisLeuHisSerLeuArgLeuAlaLeuAlaAlaTyrSerSerAsnTr : 347 ||| :!! ||| ! |||||| !:!!::! !||||||||||||||| !|| AsnIleVal***Leu***SerLeuSerIleSerAsnAlaAlaTyrSerSerProTr 1395306 : aacattgTGTGATTGTAGAGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTG : 1395360 348 : pPheAlaGlyThrGluGlyPheLysArgSerLeuGlnIleValMetValArgSerG : 366 |!:! ! ! ! ! !!:!!.!! !:!! :!!:!!|||:!!||||||| pTyrLeuLeuAspProGlnAspArgHisIleIleIleLeuLeuMetIleArgSerG 1395361 : GTACCTTCTGGATCCTCAAGACAGACATATCATTATTCTTCTCATGATAAGATCTC : 1395417 367 : lnArgProLeuThrMetSerAlaGlyAsnIleMetLeuLeuSerLeuAspThrPhe : 384 |||||! !||||||!!:!!!||||||!!..!!||| !|||||||||!!: !||| lnArgArgLeuThrIleThrAlaGlyLysPheMetAspLeuSerLeuGluGlyPhe 1395418 : AAAGACGATTAACAATCACCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTT : 1395471 385 : ValGlnIle : 387 !.!.!.:!! AlaAsnVal 1395472 : GCAAATGTA : 1395482 vulgar: CbirOr176 328 387 . KQ414716.1 1395305 1395482 + 100 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395306 1395482 100 + . gene_id 1 ; sequence CbirOr176 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395306 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395306 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395306 1395482 100 + . alignment_id 1 ; Query CbirOr176 ; Align 1395306 329 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr186PC Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 142 -> 214 Target range: 44847 -> 45063 143 : LeuPheThrAspTyrArgLysThrGlnLeuThrPheArgAlaTrpLeuProPheAsnTyr : 162 ||| !! ! ! |||!!! |||::!||| !|||||||||!::!!!|||!:!:!! ! LeuThrArgLysTyrSerGlyThrArgLeuLeuPheArgAlaTyrPheProTyrAspSer 44848 : CTCACCAGGAAGTACAGCGGCACCAGACTACTCTTCCGTGCTTATTTCCCTTACGACAGC : 44905 163 : SerSerThrMetLeuTyrHisPheThrTyrPheHisGlnLeuIleSerLeuThrValGly : 182 ..! !!:! !|||.!.|||||| .!! !|||:!!|||:!! ! ! !!.! AspValSerProAsnTyrGluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAla 44906 : GATGTCAGTCCAAATTACGAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCA : 44965 183 : SerValLeuHisValAlaCysAspGlyLeuIleCysGlyLeuLeuLeuHisIleCysCys : 202 :!!..! !:!!..!||| !||| !!!!||| !|||:!!||||||:!!||| ! AlaThrThrTyrThrAlaValAspThrPheIleValMetLeuIleLeuHisValCysGly 44966 : GCCACCACATACACAGCCGTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGA : 45025 203 : GlnMetGluIleLeuSerTyrArgLeuLysLysIle : 214 |||:!:..!! !|||!!! !!..!!!! |||:!! GlnLeuSerAsnLeuArgAsnGluPheGlyLysLeu 45026 : CAACTTTCGAATTTGAGAAACGAATTCGGTAAGCTT : 45063 vulgar: CbirOr186PC 142 214 . KQ414804.1 44847 45063 + 102 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44848 45063 102 + . gene_id 1 ; sequence CbirOr186PC ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44848 45063 . + . KQ414804.1 exonerate:protein2genome:local exon 44848 45063 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44848 45063 102 + . alignment_id 1 ; Query CbirOr186PC ; Align 44848 143 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr173PI Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 94 -> 229 Target range: 4456 -> 4051 95 : IleGlnLysLeuLeuPheGluIleGluGlnProHisLysThrTrpThrProArgGluGlnIl : 115 :!:|||||||||:!! |||!!::!! ! !:!!||| ! !||| !|||::! LeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAs 4456 : TTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGA : 4396 116 : eIleLysValLysPheIleArgArgPheTyrLysPheCysIleLeuLeuTrpIleIleThrV : 136 !:!! !::!!:!:!!!.!!:! ||| ||| !! ! ! ! pValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheT 4395 : CGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTT : 4333 137 : alIleAspLeuAlaIlePheValPheSerSerLeuIleSerAsnGluMetTyrProIleAsn : 156 !:!! ! !|||.!.|||.!!.!!||||||:!!! !::!!!: !:!|||! !||| yrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPheProThrAsn 4332 : ACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACCAAC : 4273 157 : ValValTyrProPheProIleSerAsnAsnTrpValTyrTyrValThrTyrValAspIleVa : 177 !.!|||||||||||||||:!!!:! !.!. :!! !:!!! !!:!:!! !! ! AlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHisGlnSe 4272 : GCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCACCAATC : 4210 178 : lIleAlaMetGlnGluThrCysValValMetLeuValAspLeuMetValThrLeuIleMetT : 198 !.!!!.! !:!! !..!!.! ! !:!!:!!:!!:!: !.!!|||:!!:!! rPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeuLeuLeuL 4209 : GTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTGTTATTGC : 4147 199 : rpHisAlaAlaPheGlnPheTyrLeuLeuGlyMetGlnIleArgPheValAspThrAlaGlu : 218 !.!!.!! :::||| :::||| !! !:!!:!:||| !|||:!! ! !||| euPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAspIleGlu 4146 : TATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGATATCGAA : 4087 219 : LysLeuArgAlaSerIleThrGluUnkAsnThr : 229 ! !|||! ! !|||!!:! !:!! :::||| ThrLeuIleLysSerMetLysLysTyrSerThr 4086 : ACACTGATTAAGAGTATGAAAAAGTATTCGACT : 4052 vulgar: CbirOr173PI 94 229 . LHQN01020543.1 4456 4051 - 102 M 135 405 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4052 4456 102 - . gene_id 1 ; sequence CbirOr173PI ; gene_orientation . LHQN01020543.1 exonerate:protein2genome:local cds 4052 4456 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4052 4456 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4052 4456 102 - . alignment_id 1 ; Query CbirOr173PI ; Align 4457 95 405 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr182 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 296 -> 381 Target range: 807326 -> 807581 297 : ValCysMetPheValGlnIlePheValTyrCysTrpSerGlyAsnGluValIleLeuL : 316 ||| !:!!.!.:!!|||:!:!:!:!!|||..!!:::!!|||||| !:!! ! !: ValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerA 807327 : GTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGC : 807384 317 : ysSerThrSerIleGlyAsnAlaIleTyrGluMetAsnTrpThrLeuLeuSerIleSe : 335 :!!!! !..!|||!.!.!.||| !|||!!: !||| !! !! ! ! rgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHi 807385 : GAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCA : 807441 336 : rGluLysArgAspLeuLeuMetIleMetLysArgSerAlaIleProIleLysPheThr : 354 !! ! ||||||||||||:!!|||!!: ! |||.!! ! ||| !:::.!.||| sAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThr 807442 : CGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACA : 807498 355 : SerSerPheLeuIleThrPheSerLeuGluAlaTyrSerSerIleLeuLysThrSerT : 374 :!!.!! !!!:!! !!.!.!:!||| .!!!:!!.!..!|||||||||.!!||| AlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerG 807499 : GCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTG : 807558 375 : yrSerAlaPheAsnValLeuGln : 381 !||| !.!.::!|||:!!:!! lySerTyrLeuSerValMetLys 807559 : GCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: CbirOr182 296 381 . KQ414940.1 807326 807581 + 116 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807327 807581 116 + . gene_id 1 ; sequence CbirOr182 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807327 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807327 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807327 807581 116 + . alignment_id 1 ; Query CbirOr182 ; Align 807327 297 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr183 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 288 -> 381 Target range: 807302 -> 807581 289 : AlaAlaThrLeuIleValTyrThrPheCysMetSerValGlnIlePheIleTyrCysT : 308 ||| !! ! !.!!||| ! ! ! !:!! !:!!|||:!:!:!:!!|||..!! AlaLeuArgSerPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaT 807303 : GCATTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCT : 807360 309 : rpSerGlyAsnGluValIleThrLysSerThrSerIleGlyAsnAlaValTyrGluMe : 327 :::!!|||||| !:!! :!!::!!!! !..!|||!.!.!.|||!.!|||!!: yrAlaGlyAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSe 807361 : ACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTC : 807417 328 : tAsnTrpThrLeuLeuSerIleSerGluLysArgAspLeuLeuMetIleMetLysArg : 346 !||| !! !! ! ! !! ! ||||||||||||:!!|||!!: ! ||| rLeuTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArg 807418 : TCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGA : 807474 347 : SerSerMetProIleLysPheThrSerSerPheLeuIleThrPheSerLeuGluSerT : 366 .!!!:! !||| !:::.!.|||:!!.!! !!!:!! !!.!.!:!||| !!!! GlyAsnSerProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrP 807475 : GGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTT : 807534 367 : yrSerAsnIleLeuLysThrSerTyrSerAlaPheAsnIleLeuGln : 381 :!!.!.!.|||||||||.!!||| !||| !.!.::!:!!:!!:!! heLysGluIleLeuLysAlaSerGlySerTyrLeuSerValMetLys 807535 : TCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: CbirOr183 288 381 . KQ414940.1 807302 807581 + 120 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807303 807581 120 + . gene_id 1 ; sequence CbirOr183 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807303 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807303 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807303 807581 120 + . alignment_id 1 ; Query CbirOr183 ; Align 807303 289 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr184 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 274 -> 378 Target range: 807269 -> 807581 275 : LeuTyrHisLeuSerSerHisAlaIleValAspValAlaProLeuIleValTyrAlaP : 294 ||| ! !||||||!!! ! ! !! !|||! !.! ! ! !.!!||| ! LeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuMetV 807270 : CTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGATGG : 807327 295 : heCysMetPheValGlnIlePheValTyrCysTrpAlaGlyAsnGluValIleLeuLy : 313 ! !:!!.!.:!!|||:!:!:!:!!|||..!!::||||||||| !:!! ! !:: alThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerAr 807328 : TGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCG : 807384 314 : sSerThrGluLeuSerGluGlyValTyrGlnValAspTrpThrLeuIleThrValSer : 332 !!!! !|||:!!:!!:!!!.!!.!|||.!. ! !||| !! ! ! !! ! ! gThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHis 807385 : AACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCAC : 807441 333 : GluArgArgAspLeuLeuMetIleMetLysArgSerThrArgProIleLysLeuThrS : 352 ! ! !||||||||||||:!!|||!!: ! |||.!!!.! !||| !::::!!|||: AlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrA 807442 : GCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAG : 807501 353 : erSerPheLeuValThrLeuSerLeuThrSerTyrSerAsnLeuLeuLysAlaSerTy : 371 !!.!! !!!||| !!:!!!:!||| !!!!!:!!.!.!.:!!|||||||||||| laGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGl 807502 : CCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGG : 807558 372 : rSerAlaPheAsnValLeuGln : 378 !||| !.!.::!|||:!!:!! ySerTyrLeuSerValMetLys 807559 : CTCGTATCTGTCTGTAATGAAG : 807581 vulgar: CbirOr184 274 378 . KQ414940.1 807269 807581 + 128 M 104 312 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807270 807581 128 + . gene_id 1 ; sequence CbirOr184 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807270 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807270 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807270 807581 128 + . alignment_id 1 ; Query CbirOr184 ; Align 807270 275 312 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr179 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 294 -> 377 Target range: 807332 -> 807581 295 : MetPheValGlnIlePheValTyrCysTrpAlaGlyAsnGluValMetLeuGlnSerT : 314 :!!.!.:!!|||:!:!:!:!!|||..!!::||||||||| !:!! !! !!:!!!! LeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrG 807333 : TTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCG : 807390 315 : hrGlyLeuSerGluGlyValTyrAspMetAspTrpThrLeuMetThrIleAsnGluAr : 333 !! !:!!:!!:!!!.!!.!|||||| !||| !! ! ! :!!! ! luGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAl 807391 : AAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGC : 807447 334 : gArgAspLeuLeuMetIleMetLysArgSerMetLysSerIleLysLeuThrSerSer : 352 !||||||||||||:!!|||!!: ! |||.!!! ..! !! !::::!!|||:!!.!! aArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGly 807448 : CAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGA : 807504 353 : PheLeuValThrLeuSerLeuGluSerTyrSerAsnLeuLeuLysThrSerTyrSerV : 372 !!!||| !!:!!!:!||| !!!!:!!.!.!.:!!||||||.!!||| !||| LysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerT 807505 : AAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGT : 807564 373 : alPheSerLeuLeuGln : 377 !.!.|||:!!:!!:!! yrLeuSerValMetLys 807565 : ATCTGTCTGTAATGAAG : 807581 vulgar: CbirOr179 294 377 . KQ414940.1 807332 807581 + 115 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807333 807581 115 + . gene_id 1 ; sequence CbirOr179 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807333 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807333 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807333 807581 115 + . alignment_id 1 ; Query CbirOr179 ; Align 807333 295 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr186PC Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 198 Query range: 189 -> 298 Target range: 1345 -> 681 190 : AspGlyLeuIleCysGlyLeuLeuLeuHisIleCysCysGlnMetGluIleLeuSerTyrAr : 210 |||..!|||.!! !!|||||||||:!!||||||! !||||||.!.|||||||||..!:!!|| AspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisAr 1345 : GACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCG : 1285 211 : gLeuLysLysIleValCysSerProGlu<->ArgIleArgAspCysValIleGlnHisAsnL : 230 |||||||!..||| ! !..! !||| ! !:!.!.|||!.!.!!!!.||| !!! gLeuLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrA 1284 : TCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATC : 1222 231 : euIlePhe{Ly} >>>> Target Intron 1 >>>> {s}PheAlaPheMetLeuAsn : 239 !|||!:!{||} 328 bp {|}|||||| !!::!!||| rgIleTyr{Ly}++ ++{s}PheAlaGluIleIleAsn 1221 : GCATATAC{AA}gt.........................ag{A}TTCGCTGAAATTATAAAC : 867 240 : LysLysPheArgPheThrIleThrPheGlnPheLeuValSerThrLeuValValCysPheTh : 260 !||||||!!!.!!|||!!:.!! ||||||||||||!!!|||:!!..!:!!||||||!. AlaLysPheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThrMetCysPheAs 866 : GCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACAATGTGCTTCAA : 804 261 : rLeuTyrGlnLeuThrLysThrSer<-><->GlyLysPheValGluIleGlyLeuTyrMetS : 279 !|||!:!!:!||||||:!!|||!.! ..!:!! !!:!!! !:!: !! !!:!||| nLeuPheArgLeuThrGlnThrLysValTyrSerGlnValLeuAlaLeuIleProPheMetV 803 : CCTCTTTCGACTGACACAGACCAAGGTGTATTCGCAAGTTTTAGCATTGATACCGTTCATGG : 741 280 : erCysMetLeuThrGlnIlePheLeuTyrCysTrpTyrGlyAsnGluValLysLeuLys : 298 ! !!:!!!!!.!!|||||||||! !! !||||||||||||||||||..!|||:!!||| alSerValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys 740 : TCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG : 682 vulgar: CbirOr186PC 189 298 . LHQN01050085.1 1345 681 - 198 M 30 90 G 0 3 M 13 39 S 0 2 5 0 2 I 0 324 3 0 2 S 1 1 M 35 105 G 0 6 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 682 1345 198 - . gene_id 1 ; sequence CbirOr186PC ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 1212 1345 . - . LHQN01050085.1 exonerate:protein2genome:local exon 1212 1345 . - . insertions 3 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 1210 1211 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 884 1211 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 884 885 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 682 883 . - . LHQN01050085.1 exonerate:protein2genome:local exon 682 883 . - . insertions 6 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 682 1345 198 - . alignment_id 1 ; Query CbirOr186PC ; Align 1346 190 90 ; Align 1253 220 39 ; Align 883 234 105 ; Align 772 269 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr187 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 360 Query range: 189 -> 367 Target range: 1345 -> 248 190 : AspGlyLeuIlePheGlyLeuLeuValHisIleTyrGlyGlnIleGluIleLeuGluSerAr : 210 |||..!|||.!! !|||||||||:!!||||||||| !!|||.!!|||||||||:!! !|| AspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisAr 1345 : GACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCG : 1285 211 : gLeuArgArgIleThrHisGluProAspIle<->LeuArgGluCysIleLeuGlnHisAsnA : 230 ||||!:!!!!|||! !! !!!: !!!: ! !!:!:!!||| !!!!!!.||| !!| gLeuLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrA 1284 : TCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATC : 1222 231 : rgIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheAlaValLeuIleAsn : 239 |||||! !{||} 328 bp {|}||||||! !:!!|||||| rgIleTyr{Ly}++ ++{s}PheAlaGluIleIleAsn 1221 : GCATATAC{AA}gt.........................ag{A}TTCGCTGAAATTATAAAC : 867 240 : GluLysPheArgPheIleLeuSerIleGlnPheValValSerThrLeuValValCysPheAs : 260 ! !||||||!!!.!!! :!!:!!! ||||||:!!|||!!!|||:!!..!:!!|||||||| AlaLysPheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThrMetCysPheAs 866 : GCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACAATGTGCTTCAA : 804 261 : nLeuPheGlnIleThrLysThrThrThrSerSerAlaLysTyrIleGlnLeuAlaLeuTyrM : 281 |||||||!:!:!:|||:!!|||! !..!! !||| :!! !:!! !||| !! !!:!| nLeuPheArgLeuThrGlnThrLysValTyrSer---GlnValLeuAlaLeuIleProPheM 803 : CCTCTTTCGACTGACACAGACCAAGGTGTATTCG---CAAGTTTTAGCATTGATACCGTTCA : 744 282 : etSerSerMetLeuThrGlnIlePhePheTyrCysTrpTyrGlyAsnGluValLysLeuLys : 301 || !|||:!!!!!.!!|||||||||!:!! !||||||||||||||||||..!|||:!!||| etValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys 743 : TGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG : 684 302 : >>>> Target Intron 2 >>>> SerArgGlnLeuSerAsnAsnIlePheGluMet : 312 74 bp |||! !:!!:!!!!!:!!!..:!!||||||! ++ ++SerLeuGluIleCysAspThrValPheGluSer 683 : gt.........................agAGCCTTGAAATTTGCGACACAGTATTCGAAAGC : 577 313 : GluTrpSerThrLeuAspSerArgValLysLysThrLeuLeuLeuIleMetArgArgSerTh : 333 .!.|||!!!.!!|||..!..!!!!..!||||||||||||||| !|||||| !|||||| AsnTrpThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgSerLe 576 : AACTGGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTT : 514 334 : rValProIleGluPheThrSerSerTyrIleIlePheMetAsnLeuAspSerPheValGly : 354 ! !|||||||||||||||.!!:!!!:!:!!.!! !:!:||||||!!:|||||| !.!! uLysProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSerPheLysSer+ 513 : GAAGCCAATAGAATTCACCGGCGCTTTCGTTTTTCCCGTAAATTTGGAGTCTTTTAAAAGTg : 451 355 : >>>> Target Intron 3 >>>> LeuLeuLysThrSerTyrSerAlaTyrAsnIleL : 365 161 bp |||:!!|||||||||||||||!.!!:!|||:!!: + ++LeuValLysThrSerTyrSerValPheAsnValI 450 : t.........................agTTGGTGAAAACTTCCTATTCGGTATTCAACGTAA : 257 366 : euGlnGln : 367 !!|||||| leGlnGln 256 : TCCAGCAA : 249 vulgar: CbirOr187 189 367 . LHQN01050085.1 1345 248 - 360 M 31 93 G 0 3 M 12 36 S 0 2 5 0 2 I 0 324 3 0 2 S 1 1 M 38 114 G 1 0 M 29 87 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 157 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 249 1345 360 - . gene_id 1 ; sequence CbirOr187 ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 1212 1345 . - . LHQN01050085.1 exonerate:protein2genome:local exon 1212 1345 . - . insertions 3 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 1210 1211 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 884 1211 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 884 885 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 682 883 . - . LHQN01050085.1 exonerate:protein2genome:local exon 682 883 . - . insertions 0 ; deletions 1 LHQN01050085.1 exonerate:protein2genome:local splice5 680 681 . - . intron_id 2 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 608 681 . - . intron_id 2 LHQN01050085.1 exonerate:protein2genome:local splice3 608 609 . - . intron_id 1 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 452 607 . - . LHQN01050085.1 exonerate:protein2genome:local exon 452 607 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 450 451 . - . intron_id 3 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 291 451 . - . intron_id 3 LHQN01050085.1 exonerate:protein2genome:local splice3 291 292 . - . intron_id 2 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 249 290 . - . LHQN01050085.1 exonerate:protein2genome:local exon 249 290 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 249 1345 360 - . alignment_id 1 ; Query CbirOr187 ; Align 1346 190 93 ; Align 1250 221 36 ; Align 883 234 114 ; Align 769 273 87 ; Align 608 302 156 ; Align 291 354 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr189 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 334 Query range: 189 -> 367 Target range: 1345 -> 248 190 : AspSerLeuIleCysGlyLeuLeuValHisIleCysCysGlnIleGluIleLeuGluTyrAr : 210 |||!:!|||.!! !!|||||||||:!!||||||! !||||||.!!|||||||||:!!:!!|| AspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisAr 1345 : GACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCG : 1285 211 : gLeuSerLysLeuSerArgAspHisAspVal<->LeuArgAspCysValLeuHisHisAspS : 230 ||||!.!!..:!!!.!! !|||...!!: ! !!:!.!.|||!.!!!!|||||| !! gLeuLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrA 1284 : TCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATC : 1222 231 : erIlePhe{Al} >>>> Target Intron 1 >>>> {a}TyrAlaHisLysLeuAsn : 239 !!|||!:!{ } 328 bp {!}!:!|||.!.! :!!||| rgIleTyr{Ly}++ ++{s}PheAlaGluIleIleAsn 1221 : GCATATAC{AA}gt.........................ag{A}TTCGCTGAAATTATAAAC : 867 240 : AsnGluPheArgMetThrIleAlaMetGlnPheIleValSerThrMetValValCysSerAs : 260 :!!|||!!!!!:|||!!:|||! !||||||:!:|||!!!||||||..!:!!|||! !|| AlaLysPheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThrMetCysPheAs 866 : GCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACAATGTGCTTCAA : 804 261 : nLeuTyrGlnMetThrLysSerThrThrAlaAsnAlaSerTyrLeuProLeuLeuLeuTyrM : 281 ||||!:!!:!:!!|||:!! |||! !!.! !!:!!..! !||| !!|||:!!! !!:!| nLeuPheArgLeuThrGln---ThrLysValTyrSerGlnValLeuAlaLeuIleProPheM 803 : CCTCTTTCGACTGACACAG---ACCAAGGTGTATTCGCAAGTTTTAGCATTGATACCGTTCA : 744 282 : etSerCysMetMetThrGlnIlePheIleTyrCysTrpTyrGlyAsnGluValLysLeuLys : 301 || ! !!:!!.!..!!||||||||| !! !||||||||||||||||||..!|||:!!||| etValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys 743 : TGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG : 684 302 : >>>> Target Intron 2 >>>> SerIleGlnLeuValAspAsnIlePheAlaMet : 312 74 bp |||:!!:!!:!! !|||!..:!!|||! !! ++ ++SerLeuGluIleCysAspThrValPheGluSer 683 : gt.........................agAGCCTTGAAATTTGCGACACAGTATTCGAAAGC : 577 313 : AspTrpLeuThrLeuAspArgAsnValThrArgGlyLeuLeuIleIleMetAsnArgAlaTh : 333 :!!||| !.!!|||..!!:!!:!..!! !!:! !||||||! |||||| |||:!! AsnTrpThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgSerLe 576 : AACTGGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTT : 514 334 : rIleProIleGluPheThrSerGlyTyrValPheSerMetAsnLeuAspSerPheValGly : 354 !! |||||||||||||||.!!!.!!:!|||||| !!:!:||||||!!:|||||| !.!! uLysProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSerPheLysSer+ 513 : GAAGCCAATAGAATTCACCGGCGCTTTCGTTTTTCCCGTAAATTTGGAGTCTTTTAAAAGTg : 451 355 : >>>> Target Intron 3 >>>> IleLeuLysThrSerTyrSerAlaTyrAsnIleL : 365 161 bp :!::!!|||||||||||||||!.!!:!|||:!!: + ++LeuValLysThrSerTyrSerValPheAsnValI 450 : t.........................agTTGGTGAAAACTTCCTATTCGGTATTCAACGTAA : 257 366 : euLysLys : 367 !!:!!:!! leGlnGln 256 : TCCAGCAA : 249 vulgar: CbirOr189 189 367 . LHQN01050085.1 1345 248 - 334 M 31 93 G 0 3 M 12 36 S 0 2 5 0 2 I 0 324 3 0 2 S 1 1 M 33 99 G 1 0 M 34 102 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 157 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 249 1345 334 - . gene_id 1 ; sequence CbirOr189 ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 1212 1345 . - . LHQN01050085.1 exonerate:protein2genome:local exon 1212 1345 . - . insertions 3 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 1210 1211 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 884 1211 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 884 885 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 682 883 . - . LHQN01050085.1 exonerate:protein2genome:local exon 682 883 . - . insertions 0 ; deletions 1 LHQN01050085.1 exonerate:protein2genome:local splice5 680 681 . - . intron_id 2 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 608 681 . - . intron_id 2 LHQN01050085.1 exonerate:protein2genome:local splice3 608 609 . - . intron_id 1 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 452 607 . - . LHQN01050085.1 exonerate:protein2genome:local exon 452 607 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 450 451 . - . intron_id 3 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 291 451 . - . intron_id 3 LHQN01050085.1 exonerate:protein2genome:local splice3 291 292 . - . intron_id 2 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 249 290 . - . LHQN01050085.1 exonerate:protein2genome:local exon 249 290 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 249 1345 334 - . alignment_id 1 ; Query CbirOr189 ; Align 1346 190 93 ; Align 1250 221 36 ; Align 883 234 99 ; Align 784 268 102 ; Align 608 302 156 ; Align 291 354 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr188CTE Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 210 Query range: 189 -> 300 Target range: 1345 -> 684 190 : AspGlyLeuIleCysGlyPheLeuValHisIleCysCysGlnIleGluIleLeuGluSerAr : 210 |||..!|||.!! !!|||.!.|||:!!||||||! !||||||.!!|||||||||:!! !|| AspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisAr 1345 : GACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCG : 1285 211 : gLeuArgArgIleValCysGluProAspIle<->LeuArgAspCysIleLeuGlnHisAsnA : 230 ||||!:!!!!||| ! !!!: !!!: ! !!:!.!.||| !!!!!!.||| !!| gLeuLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrA 1284 : TCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATC : 1222 231 : rgIlePhe{As} >>>> Target Intron 1 >>>> {n}PheAlaPheLeuValAsn : 239 |||||!:!{!!} 328 bp {.}|||||| :!!:!!||| rgIleTyr{Ly}++ ++{s}PheAlaGluIleIleAsn 1221 : GCATATAC{AA}gt.........................ag{A}TTCGCTGAAATTATAAAC : 867 240 : GluLysPheArgPheThrIleThrIleGlnPheIleValSerThrLeuValValCysPheAs : 260 ! !||||||!!!.!!|||!!:.!!! ||||||:!:|||!!!|||:!!..!:!!|||||||| AlaLysPheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThrMetCysPheAs 866 : GCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACAATGTGCTTCAA : 804 261 : nLeuTyrGlnLeuThrArgValThrThrSerAsnGluLysTyrMetGlnLeuValLeuTyrM : 281 ||||!:!!:!||||||!:! |||! ! ! !!..!:!! !:!: !|||:!!! !!:!| nLeuPheArgLeuThrGln---ThrLysValTyrSerGlnValLeuAlaLeuIleProPheM 803 : CCTCTTTCGACTGACACAG---ACCAAGGTGTATTCGCAAGTTTTAGCATTGATACCGTTCA : 744 282 : etCysCysMetLeuThrGlnIlePhePheTyrCysTrpTyrGlyAsnGluValLysLeu : 300 || ! !!:!!!!!.!!|||||||||!:!! !||||||||||||||||||..!|||:!! etValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLysVal 743 : TGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTG : 685 vulgar: CbirOr188CTE 189 300 . LHQN01050085.1 1345 684 - 210 M 31 93 G 0 3 M 12 36 S 0 2 5 0 2 I 0 324 3 0 2 S 1 1 M 33 99 G 1 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 685 1345 210 - . gene_id 1 ; sequence CbirOr188CTE ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 1212 1345 . - . LHQN01050085.1 exonerate:protein2genome:local exon 1212 1345 . - . insertions 3 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 1210 1211 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 884 1211 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 884 885 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 685 883 . - . LHQN01050085.1 exonerate:protein2genome:local exon 685 883 . - . insertions 0 ; deletions 1 LHQN01050085.1 exonerate:protein2genome:local similarity 685 1345 210 - . alignment_id 1 ; Query CbirOr188CTE ; Align 1346 190 93 ; Align 1250 221 36 ; Align 883 234 99 ; Align 784 268 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr177 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 249 -> 319 Target range: 888 -> 681 250 : TyrArgPheAlaAspArgValThrAlaValPheThrLeuMetIleLeuLeuGlnPheThrIleS : 271 !:!|||||||||!!:! !:!!!.!||| !|||!:!:!!! !!!: ! !|||||| !:!:! PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValT 888 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGA : 825 272 : erSerThrValLeuCysLeuSerValTyrGluMetSerLysLysAsnLeuLeuSerPheGluPh : 292 !!!!!! !..!:!!|||!!!!:!:!!!:!..!:!!!!!:!!! !!.:!!! !||| ! !! hrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysValTyrSerGlnValLe 824 : CCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGGTGTATTCGCAAGTTTT : 762 293 : eAlaTrpSerSerLeuTyrLeuGlyCysMetLeuMetGlnIlePheLeuTyrCysTrpPheGly : 313 .|||! !! ! !! !:!:!!! ! !!:!!!!! |||||||||! !! !||||||!:!||| uAlaLeuIlePro---PheMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGly 761 : AGCATTGATACCG---TTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGA : 702 314 : AsnGluValThrLeuLys : 319 ||||||..!! !:!!||| AsnGluThrLysValLys 701 : AACGAGACCAAAGTGAAG : 682 vulgar: CbirOr177 249 319 . LHQN01050085.1 888 681 - 100 M 47 141 G 1 0 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 682 888 100 - . gene_id 1 ; sequence CbirOr177 ; gene_orientation . LHQN01050085.1 exonerate:protein2genome:local cds 682 888 . - . LHQN01050085.1 exonerate:protein2genome:local exon 682 888 . - . insertions 0 ; deletions 1 LHQN01050085.1 exonerate:protein2genome:local similarity 682 888 100 - . alignment_id 1 ; Query CbirOr177 ; Align 889 250 141 ; Align 748 298 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr210 Target: KQ414573.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold16, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 136 -> 214 Target range: 648894 -> 648657 137 : TyrSerThrMetProValValLeuArgGlyIleTyrSerPhe<->LeuProAsnGlnT : 155 !:!:!!.!!||||||:!!:!!|||!.!!.! ! !!!!!!!. !!! !||| !: PheAlaAlaMetProLeuLeuLeuAsnAlaAlaAspThrLeuGlyPheSerAsnValS 648894 : TTTGCGGCAATGCCATTACTGCTGAATGCAGCTGACACTTTAGGATTCAGCAATGTGT : 648837 156 : hrTyrGluIleLysPheLeuPheArgValGluHisValIleAspValGluLysTyrPh : 174 !! !!!: ! !!!.:!!||||||||||||||| !!:!:||||||!!:||||||!: erSerAspArgProLeuValPheArgValGluHisPheValAspValAspLysTyrTy 648836 : CCAGCGATCGACCGTTGGTATTTCGAGTTGAACATTTCGTGGATGTGGACAAATACTA : 648780 175 : eAsnLeuLeuMetIleTyrAlaIleIleSerValPheTyrIleValSerValValVal : 193 ! !! !|||:!::!::!!:!! !.!!.!!..!.!. .!!..!:!!:!!|||||| rTyrThrLeuLeuValHisSerTyrPheGlyThrIleAlaPheThrAlaIleValVal 648779 : CTATACCCTTTTAGTGCATTCATACTTTGGTACTATAGCATTTACTGCGATTGTTGTC : 648723 194 : AlaIleAspCysIlePheValAlaCysIleGlnHisAsnThrAlaLeuPheGluCysI : 213 :!!|||:!!! |||.!.!.!!.!! !:!!! !|||.!. !!.!|||! !||| !: SerIleAsnSerIleIleAlaValTyrValLeuHisGluCysGlyLeuCysGluIleL 648722 : TCTATCAACTCGATAATAGCTGTGTACGTCCTACACGAATGCGGACTTTGTGAAATCT : 648663 214 : leArg : 214 !!||| euArg 648662 : TAAGG : 648658 vulgar: CbirOr210 136 214 . KQ414573.1 648894 648657 - 105 M 14 42 G 0 3 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414573.1 exonerate:protein2genome:local gene 648658 648894 105 - . gene_id 1 ; sequence CbirOr210 ; gene_orientation . KQ414573.1 exonerate:protein2genome:local cds 648658 648894 . - . KQ414573.1 exonerate:protein2genome:local exon 648658 648894 . - . insertions 3 ; deletions 0 KQ414573.1 exonerate:protein2genome:local similarity 648658 648894 105 - . alignment_id 1 ; Query CbirOr210 ; Align 648895 137 42 ; Align 648850 151 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr209 Target: KQ414573.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold16, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 129 -> 214 Target range: 648915 -> 648660 130 : IleIleGlyPheValPheCysTyrAlaLeuLeuProLeuAlaGlyProValLeuAspI : 149 :!!.!!|||!!.:!! !:!||| !:!!|||||| ! ! !!.! !|||! LeuPheGlyLeuIleThrProPheAlaAlaMetProLeuLeuLeuAsnAlaAlaAspT 648915 : TTATTCGGATTAATAACACCGTTTGCGGCAATGCCATTACTGCTGAATGCAGCTGACA : 648858 150 : leIleSerProLeuAsnGlyThrArgProArgLysMetProHisProAlaGluTyrPh : 168 !:!!.!! ! !|||! !:!!!!! !||| !:!! ! !! !!.!|||:!!|| hrLeuGlyPheSerAsnValSerSerAspArgProLeuValPheArgValGluHisPh 648857 : CTTTAGGATTCAGCAATGTGTCCAGCGATCGACCGTTGGTATTTCGAGTTGAACATTT : 648801 169 : eIleAsnGlnGluLysTyrTyrTyrValLeuLeuLeuAsnThrTyrValGlyTyrVal : 187 |:!::!! !!!:||||||||||||..!||||||:!!:!!:!!||| !!||| !:!! eValAspValAspLysTyrTyrTyrThrLeuLeuValHisSerTyrPheGlyThrIle 648800 : CGTGGATGTGGACAAATACTACTATACCCTTTTAGTGCATTCATACTTTGGTACTATA : 648744 188 : AlaCysValSerIleAlaValAlaAlaAspThrMetTyrValLeuLeuValGluHisI : 207 |||! !..!:!!|||!.!|||:!! !:!!:!!!!: !.!:!!! !||| !||| AlaPheThrAlaIleValValSerIleAsnSerIleIleAlaValTyrValLeuHisG 648743 : GCATTTACTGCGATTGTTGTCTCTATCAACTCGATAATAGCTGTGTACGTCCTACACG : 648684 208 : leCysGlyMetTyrGlyValLeu : 214 !||||||:!:! !! !:!!||| luCysGlyLeuCysGluIleLeu 648683 : AATGCGGACTTTGTGAAATCTTA : 648661 vulgar: CbirOr209 129 214 . KQ414573.1 648915 648660 - 127 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414573.1 exonerate:protein2genome:local gene 648661 648915 127 - . gene_id 1 ; sequence CbirOr209 ; gene_orientation . KQ414573.1 exonerate:protein2genome:local cds 648661 648915 . - . KQ414573.1 exonerate:protein2genome:local exon 648661 648915 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local similarity 648661 648915 127 - . alignment_id 1 ; Query CbirOr209 ; Align 648916 130 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr209 Target: KQ414573.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold16, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 327 -> 377 Target range: 628998 -> 628848 328 : IleSerIleAlaAlaTyrAsnGlyThrTrpTyrAsnAlaProThrGluValGlnLysL : 347 ||| ||| ||||||! !||||||.!.:!! !! !.!. !::!|||| IleTyrIlePheArgThrAsnGlyLysTrpTyrGluSerSerTyrAsnCysArgLysL 628998 : atatatattttcaggACAAATGGCAAATGGTATGAATCGTCATATAATTGCAGAAAAC : 628941 348 : euLeuIleLeuLeuIleAlaArgSerGlnLysAlaSerArgIleThrIleAlaLysLe : 366 ||||||||:!!:!!:!!:!!!:!||| !! !:!! !!:!:!!||| !..!|||:! euLeuIleIleMetLeuSerLysSerLeuThrSerLeuLysLeuThrAlaCysLysIl 628940 : TTCTGATAATAATGTTATCAAAAAGCTTAACATCTCTTAAATTAACGGCTTGCAAAAT : 628884 367 : uTyrValIleAsnLeuGluGlyPheSerMetVal : 377 !|||...:::|||||||||...|||!:! !||| eTyrThrLeuAsnLeuGluSerPheAsnAlaVal 628883 : CTACACattaaatttagaaagttTCAATGCGGTA : 628849 vulgar: CbirOr209 327 377 . KQ414573.1 628998 628848 - 103 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414573.1 exonerate:protein2genome:local gene 628849 628998 103 - . gene_id 2 ; sequence CbirOr209 ; gene_orientation . KQ414573.1 exonerate:protein2genome:local cds 628849 628998 . - . KQ414573.1 exonerate:protein2genome:local exon 628849 628998 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local similarity 628849 628998 103 - . alignment_id 2 ; Query CbirOr209 ; Align 628999 328 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr198 Target: KQ414583.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold34, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 288 -> 354 Target range: 620425 -> 620691 289 : GlnIlePheLeuTyrCysTrpPheGlyAsnLysValLysLeuLys >>>> Target : 304 |||||||||:!!||||||||| !||||||:!!:!! ! ||| ! 6 GlnIlePheIleTyrCysTrpHisGlyAsnGluLeuTyrLeuHis++ 620426 : CAAATCTTTATATATTGCTGGCACGGGAACGAACTGTATCTTCATgt........... : 620473 305 : Intron 1 >>>> SerLeuHisLeuAlaAsnSerIleTyrAspLeuGluTrpArg : 317 8 bp |||:!!:!!:!!..! !:!! !||| !.!.||| !! ++SerMetAsnIleCysPheAlaAlaTyrMetAsnAsnTrpTrp 620474 : ..............agAGCATGAATATATGTTTTGCCGCTTATATGAATAATTGGTGG : 620578 318 : ThrLeuThrValSerThrLysLysAlaLeuLeuLeuIleMetAsnArgAlaLysIleP : 337 ! !||| !..! !|||::!|||||||||:!!:!!|||:::!:!|||:!! !| HisAsnThrLysAspPheLysArgAlaLeuLeuValValMetSerLysAlaGlnArgP 620579 : CATAATACCAAGGATTTTAAACGAGCCTTGCTCGTTGTAATGTCAAAAGCTCAACGAC : 620638 338 : roIleGluPheLysSerIleSerIleLeuThrMetAsnArgAspSerTyrLeu : 354 ||||| !!.! ! !!:!|||:!! !:!:::! !!!:!:!!:!:!! roIleIleLeuThrValGlyAsnIleMetGluLeuSerLeuGluAsnPheVal 620639 : CTATTATTTTAACTGTTGGAAATATTATGGAATTATCTTTAGAGAATTTCGTT : 620691 vulgar: CbirOr198 288 354 . KQ414583.1 620425 620691 + 101 M 15 45 5 0 2 I 0 64 3 0 2 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414583.1 exonerate:protein2genome:local gene 620426 620691 101 + . gene_id 1 ; sequence CbirOr198 ; gene_orientation + KQ414583.1 exonerate:protein2genome:local cds 620426 620470 . + . KQ414583.1 exonerate:protein2genome:local exon 620426 620470 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local splice5 620471 620472 . + . intron_id 1 ; splice_site "GT" KQ414583.1 exonerate:protein2genome:local intron 620471 620538 . + . intron_id 1 KQ414583.1 exonerate:protein2genome:local splice3 620537 620538 . + . intron_id 0 ; splice_site "AG" KQ414583.1 exonerate:protein2genome:local cds 620539 620691 . + . KQ414583.1 exonerate:protein2genome:local exon 620539 620691 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local similarity 620426 620691 101 + . alignment_id 1 ; Query CbirOr198 ; Align 620426 289 45 ; Align 620539 304 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr197 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 606 Query range: 6 -> 350 Target range: 3149050 -> 3151028 7 : LeuCysThrLeuSerGlyCysTrpLeuProProSerTrpMetSerLeuProLysHi : 25 :!! |||:!!!!!||||||||| !||| !|||!! !!! !! ! ! IleLeuThrIleCysGlyCysTrpArgProCysSerCysArgThrThrArgAlaLy 3149051 : ATACTGACGATCTGCGGATGCTGGAGGCCGTGCTCGTGCCGAACGACACGCGCCAA : 3149105 26 : sArgMetTyrSerIleTyrArgIleLeuLeuIleValIleLeuPheThrPheThrI : 44 ! !|||! !:!!|||! !!!:!!!:!!:!!:!!:!!||| !!:!||| !| sAlaAlaTyrIleValTyrThrMetPheValValLeuLeuLeuHisSerPheCysI 3149106 : GGCCGCGTACATCGTTTACACGATGTTCGTGGTACTTTTATTGCACAGCTTCTGCA : 3149162 45 : leSerGlnIleMetAsnValLeuLeuAsnIleAspLysPheAspGluIleSerAsp : 62 ||||||||......||||||::!||||||:!: ! ! ||||||:!:|||!!: leSerGlnPhePheAsnValIleLeuAsnLeuArgThrAlaAspGluLeuSerGlu 3149163 : TctcgcaatttttcaacgtgatACTGAACTTGAGAACGGCGGACGAGCTGAGCGAG : 3149216 63 : SerIleTyrMetMetValSerIleSerValAlaAlaTyrLysIleIleAlaValTr : 81 |||.!!||||||.!.:!!:!! ! !:!!:!!..!! !||||||:!!.!!:!! SerPheTyrMetPheIleAlaSerValLeuSerCysCysLysIleValThrLeuLe 3149217 : AGTTTCTACATGTTCATCGCGTCCGTTCTGTCCTGCTGCAAGATCGTCACGCTGCT : 3149273 82 : pIleAsnHisLysAsnIleThrGluIleIleThrIlePheAlaGluLysProPheA : 100 !! |||||| !!:!||| ! :!! ! !! !.!.! !|||:!!|||! ! uThrAsnHisGlySerIleGluIleLeuArgArgArgLeuGluGluGluProCysL 3149274 : GACGAACCACGGAAGCATCGAGATCCTCCGGAGGAGACTGGAGGAGGAGCCGTGTA : 3149330 101 : laThrValGluSerSerGluGluMetIleGlnGlnLysTyrAsnLysAlaIle{Ly : 118 ! !!|||...:!!..!|||! :!:||||||...|||!:!:!!!:! !|||{ ysProValSerAlaGluGluAlaValIleGlnSerLysPheAspArgAsnIle{Gl 3149331 : AACCTGTGAGCGCCGAGGAGGCTGTCATACAGAGTAAATTCGACAGAAACATC{GG : 3149384 119 : } >>>> Target Intron 1 >>>> {s}LysTyrAlaLeuTrpTyrValIl : 126 } 649 bp {!}..! .!!:!!!::|||..!|| }++ ++{y}SerValThrIleTyrTyrThrIl 3149385 : }gt.........................ag{G}TCGGTGACGATTTACTACACGAT : 3150057 127 : eLeuValGluThrThrValGlyIleMetIleValGlySerAlaPheThrAspGlyV : 145 |||||||||| !|||||| ! !||||||:!!..!||| !.!! !||| ! eLeuValGluLeuThrValLeuCysMetIleLeuSerSerLeuLeuGlyAspPheA 3150058 : TCTGGTGGAACTCACGGTCCTCTGTATGATCCTCTCTTCGTTGCTCGGCGACTTTA : 3150114 146 : alGluArgLysLeuProTyrArgValTrpLeuProTyrAspTyrSerProProThr : 163 !||||||:!!||| !!||||||!.!|||||||||!:!|||||||||! !|||||| snGluArgGluLeuAlaTyrArgAlaTrpLeuProPheAspTyrSerLeuProThr 3150115 : ACGAGCGGGAACTGGCGTACAGAGCCTGGCTGCCCTTCGATTACTCTCTGCCAACT : 3150168 164 : IlePheTyrProThrTyrIleHisGlnLeuIleGlyMetThrIleAlaAlaAsnIl : 182 !!:!||| !.!!|||:!!||||||:!!:!!!.!:!!! ! !.!!:!! ! TyrTyrTyrIleAlaTyrValHisGlnIleValAlaLeuIleGlyThrSerLeuSe 3150169 : TACTATTACATCGCGTACGTTCATCAGATCGTCGCGCTGATCGGTACGTCGCTTTC : 3150225 183 : eAsnIleAlaCysAspSerLeuIleSerGlyLeuLeuGlnGlnIleCysCysGlnI : 201 |||:!!||||||||| !:!!|||!!!||||||||| !!. !||| !!||| rAsnValAlaCysAspValIleIleCysGlyLeuLeuValHisAlaCysGlyGlnG 3150226 : GAACGTCGCCTGCGACGTGATCATCTGCGGGTTGCTCGTTCACGCTTGCGGCCAAC : 3150282 202 : leGluIleLeuGlnTyrArgLeuThrLysValSerHisAspGlyHisVal<->Leu : 218 |||||||||:!!:!!|||:!!! !:!!:!!!!!!!.!!: !... ! :!! lnGluIleLeuLysHisArgMetLysGluMetThrGlnGluGlnArgProAsnIle 3150283 : AGGAGATTCTCAAGCACAGAATGAAGGAGATGACGCAGGAACAGAGGCCGAATATC : 3150336 219 : AsnAsnCysValArgHisHisAspArgIleTyr{Ly} >>>> Target Intro : 230 ...!!. !|||||| !|||||| !:!!|||{ } 230 bp GlyLysIleValArgPheHisAspTyrLeuTyr{Gl}++ 3150337 : GGGAAAATCGTTCGTTTCCACGATTATCTTTAC{GG}gt................. : 3150376 231 : n 2 >>>> {s}TyrAlaGlnThrValAsnMetAsnPheThrLysIleIleAlaL : 245 {!}|||!.! |||:!!.!. !!!.|||! ! !||||||!.!: ++{y}TyrValPheThrMetGlnGluLysPheArgTrpIleIleGlyV 3150377 : ........ag{G}TACGTTTTCACGATGCAAGAGAAGTTCAGATGGATAATAGGCG : 3150647 246 : euGlnPheValValSerMetLeuValValCysAlaAsnLeuTyrLysLeuVal<-> : 263 !!|||.!!:!! !|||! !|||||||||||| !! !||||||:!!|||!.! alGlnLeuLeuSerSerThrLeuValValCysPheIleLeuTyrGluLeuAlaAsn 3150648 : TGCAGCTTTTATCGAGCACGCTGGTAGTGTGTTTCATCCTGTACGAATTGGCGAAC : 3150701 264 : MetAlaThrIleLeuAlaAspPheIleIleLeuMetLeuTyrThrAlaCysMetLe : 281 ! ! !! !!||| !:!! ! !:!:!: !!!!:!:|||||| !|||||||||:! ThrProProIleSerSerLysTyrLeuGlnPheValLeuTyrLeuAlaCysMetMe 3150702 : ACGCCTCCAATCAGCTCCAAGTACCTGCAATTTGTCCTGTACCTGGCCTGTATGAT : 3150758 282 : uAlaGlnIlePheLeuTyrCysTrpPheGlyAsnGluLeuLysLeuLys >>>> : 298 !.!!|||||||||!!!|||||||||!:!|||.!.:!!|||||||||||| tThrGlnIlePhePheTyrCysTrpTyrGlyGluGlnLeuLysLeuLys++ 3150759 : GACGCAGATCTTCTTTTACTGCTGGTACGGCGAGCAGTTGAAACTGAAGgt..... : 3150811 299 : Target Intron 3 >>>> SerLysSerLeuSerAsnSerIleTyrAsnIleT : 309 61 bp ||| ..!:!! !..!!!!|||!:!.!.!!: ++SerValGluIleValArgThrIlePheGluMetA 3150812 : ....................agAGCGTCGAGATTGTGCGCACGATCTTCGAAATGG : 3150903 310 : hrTrpTyrThrLeuAspAspSerLysLysLysSerLeuLeuLeuIleMetLysArg : 327 !||| !!|||.!.:!!.!!! ||||||..!|||:!!:!!:!: !!:!||| spTrpIleProLeuGlnAsnGlyIleLysLysAspLeuIleValValAlaArgArg 3150904 : ATTGGATACCTCTCCAGAACGGTATCAAGAAGGATTTGATAGTCGTGGCGAGAAGA : 3150957 328 : SerMetIleProIleGluPheAsnSerValValIleIleThrLeuAsnLeuAspSe : 346 :!!|||||||||||||||!!.!.!!!!!.! !!!:.!!|||:!!:!!|||:!!!! AlaMetIleProIleGluLeuThrCysAlaTyrMetPheThrMetAspLeuAsnTh 3150958 : GCGATGATCCCGATCGAGTTGACCTGCGCGTACATGTTCACCATGGACTTGAACAC : 3151014 347 : rPheValSerLeu : 350 !|||||||||:!! rPheValSerVal 3151015 : CTTCGTCAGCGTC : 3151028 vulgar: CbirOr197 6 350 . KQ414646.1 3149050 3151028 + 606 M 111 333 S 0 2 5 0 2 I 0 645 3 0 2 S 1 1 M 99 297 G 0 3 M 12 36 S 0 2 5 0 2 I 0 226 3 0 2 S 1 1 M 32 96 G 0 3 M 35 105 5 0 2 I 0 57 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3149051 3151028 606 + . gene_id 1 ; sequence CbirOr197 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3149051 3149385 . + . KQ414646.1 exonerate:protein2genome:local exon 3149051 3149385 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3149386 3149387 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3149386 3150034 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150033 3150034 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150035 3150373 . + . KQ414646.1 exonerate:protein2genome:local exon 3150035 3150373 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150374 3150375 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150374 3150603 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3150602 3150603 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150604 3150808 . + . KQ414646.1 exonerate:protein2genome:local exon 3150604 3150808 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150809 3150810 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150809 3150869 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3150868 3150869 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150870 3151028 . + . KQ414646.1 exonerate:protein2genome:local exon 3150870 3151028 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3149051 3151028 606 + . alignment_id 1 ; Query CbirOr197 ; Align 3149051 7 333 ; Align 3150036 119 297 ; Align 3150336 218 36 ; Align 3150605 231 96 ; Align 3150704 263 105 ; Align 3150870 298 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr197 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 406 Query range: 117 -> 365 Target range: 3155400 -> 3156422 118 : LysLysTyrAlaLeuTrpTyrValIleLeuValGluThrThrValGlyIleMetIl : 136 !:!!:! !:!! !!::|||!.!||||||||||||:!!|||||| !! !:!! ArgArgSerSerThrTyrTyrAlaIleLeuValGluSerThrValMetThrLeuSe 3155401 : AGAAGAAGCTCAACCTATTACGCGATTCTGGTCGAATCGACGGTGATGACTTTGTC : 3155455 137 : eValGlySerAlaPheThrAspGlyValGluArgLysLeuProTyrArgValTrpL : 155 ! !!||| |||.!. ! ! !! !..!||| ||||||||||||:!!|||| rPheGly---AlaLeuLeuLysProGluSerArgProLeuProTyrArgIleTrpL 3155456 : TTTCGGT---GCACTGTTGAAACCAGAATCACGTCCTTTACCGTATCGAATTTGGC : 3155509 156 : euProTyrAspTyrSerProProThrIlePheTyrProThrTyrIleHisGlnLeu : 173 |||||! !:!!|||!!!||| !! !! !!:!! ! !!! !|||! !! !|||! ! euProCysAsnTyrThrProLeuIleThrTyrCysSerIleTyrThrLeuGlnCys 3155510 : TACCTTGCAATTACACCCCGTTAATTACTTACTGTTCGATTTACACTCTCCAATGT : 3155563 174 : IleGlyMetThrIleAlaAlaAsnIleAsnIleAlaCysAspSerLeuIleSerGl : 192 :!:!.!:!:.!!:!!::!|||! !!::!!:!!||||||||||||||||||!!!|| ValAlaLeuAlaLeuSerAlaMetMetHisValAlaCysAspSerLeuIleCysGl 3155564 : GTGGCACTCGCTCTAAGCGCTATGATGCACGTCGCCTGCGACAGTTTGATCTGCGG : 3155620 193 : yLeuLeuGlnGlnIleCysCysGlnIleGluIleLeuGlnTyrArgLeuThrLysV : 211 ||||||| !!!.! !! ! !!||||||||||||||| ! !||||||! : yLeuLeuLeuHisThrTyrGlyGlnIleGluIleLeuGlyCysArgLeuLysThrI 3155621 : CCTGCTGTTACACACTTACGGCCAGATCGAGATCCTCGGTTGTCGTCTGAaaacga : 3155677 212 : al<->SerHisAspGlyHisValLeuAsnAsnCysValArgHisHisAspArgIle : 228 :: ...::::::... ! ..!! !!!. |||||||||:!!:!!:!!! !||| leLysGluAsnGluSerLysThrSerLysLeuCysValArgTyrAsnAsnLeuIle 3155678 : taaaagaaaacgagagtAAGACGTCCAAGTTGTGCGTTCGTTACAACAACCTTATC : 3155731 229 : Tyr{Ly} >>>> Target Intron 1 >>>> {s}TyrAlaGlnThrValAs : 236 |||{::} 69 bp {!}!:!.!! ! !:!!|| Tyr{Ar}++ ++{g}PheThrAlaMetIleAs 3155732 : TAT{CG}gt.........................ag{A}TTCACCGCTATGATAAA : 3155824 237 : nMetAsnPheThrLysIleIleAlaLeuGlnPheValValSerMetLeuValValC : 255 | !.!.||| !! ! ||| ! !||||||!.!||||||! !|||!.!:!!| nGluGlnPheGluMetAlaIlePheThrGlnPheAlaValSerThrLeuAlaIleC 3155825 : CGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGTGAGTACGCTGGCGATAT : 3155881 256 : ysAlaAsnLeuTyrLysLeuValMetAlaThrIleLeu<->AlaAspPheIleIle : 272 || !||||||||| !|||..! :!! !:!: ! ! !:!:!: ! ysPheAsnLeuTyrLeuLeuThrGlySerAspValThrProIleArgTyrValGlu 3155882 : GCTTCAATCTTTACCTATTAACAGGATCAGATGTGACGCCGATTAGGTATGTGGAA : 3155935 273 : LeuMetLeuTyrThrAlaCysMetLeuAlaGlnIlePheLeuTyrCysTrpPheGl : 291 :!!!!::!!|||!:!::!|||||||||.!!|||||||||:!!|||||||||!:!|| IleIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysTrpTyrGl 3155936 : ATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTGGTACGG : 3155992 292 : yAsnGluLeuLysLeuLysSerLysSer >>>> Target Intron 2 >>>> : 301 |||||||:!!||||||||| !...! ! 73 bp yAsnGluValLysLeuLysValSerTyr-+ + 3155993 : GAACGAAGTTAAGCTGAAGGTTTCTTATtt.........................a : 3156093 302 : LeuSerAsnSerIleTyrAsnIleThrTrpTyrThrLeuAspAspSerLysLysL : 319 :!!||||||! !|||!:!:!!:!! !||| !!!!!||| ! :!!! !|||: +IleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAlaThrLysA 3156094 : gATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGCTACAAAAC : 3156149 320 : ysSerLeuLeuLeuIleMetLysArgSerMetIleProIleGluPheAsnSerVal : 337 :!!:!:!!||| !!!:|||! !|||:!! ! |||||||||.!!! !|||||| rgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleIleSerVal 3156150 : GAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCATCAGCGTT : 3156203 338 : ValIleIleThrLeuAsnLeuAspSerPheValSer >>>> Target Intron : 350 !:!::!!:!!:!!||||||||||||||||||:!! 133 bp ArgValLeuSerValAsnLeuAspSerPheValAla++ 3156204 : CGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.................. : 3156244 351 : 3 >>>> LeuLeuLysAlaSerTyrSerValPheAsnValLeuLysArgAlaGl : 365 |||||||||.!!|||||||||!.!!:!|||||||||:!!|||!.!:! ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGlnArgGlyGl 3156245 : .......agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAACGCGGCGA : 3156420 366 : n : 365 ! u 3156421 : A : 3156422 vulgar: CbirOr197 117 365 . KQ414646.1 3155400 3156422 + 406 M 21 63 G 1 0 M 72 216 G 0 3 M 18 54 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 37 111 G 0 3 M 33 99 5 0 2 I 0 69 3 0 2 M 49 147 5 0 2 I 0 129 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155401 3156422 406 + . gene_id 2 ; sequence CbirOr197 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3155401 3155738 . + . KQ414646.1 exonerate:protein2genome:local exon 3155401 3155738 . + . insertions 3 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3155739 3155740 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3155739 3155807 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3155806 3155807 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3155808 3156021 . + . KQ414646.1 exonerate:protein2genome:local exon 3155808 3156021 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156022 3156023 . + . intron_id 2 ; splice_site "TT" KQ414646.1 exonerate:protein2genome:local intron 3156022 3156094 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3156093 3156094 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156095 3156241 . + . KQ414646.1 exonerate:protein2genome:local exon 3156095 3156241 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156242 3156243 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156242 3156374 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3156373 3156374 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156375 3156422 . + . KQ414646.1 exonerate:protein2genome:local exon 3156375 3156422 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155401 3156422 406 + . alignment_id 2 ; Query CbirOr197 ; Align 3155401 118 63 ; Align 3155464 140 216 ; Align 3155683 212 54 ; Align 3155809 231 111 ; Align 3155923 268 99 ; Align 3156095 301 147 ; Align 3156375 350 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr197 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 375 Query range: 134 -> 297 Target range: 3164367 -> 3165184 135 : MetIleValGlySerAlaPheThrAspGlyValGluArgLysLeuProTyrArgVa : 153 !!: !||| !!||| !!!.|||||| ! !...||||||||| !!:!|||!. IleTyrValArgSerLeuLeuThrAspPheSerSerArgLysLeuMetPheArgAl 3164368 : ATATACGTGAGATCGCTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGC : 3164422 154 : lTrpLeuProTyrAspTyrSerProProThrIlePheTyrProThrTyrIleHisG : 172 !|||||||||||||||||||||||| !! !!|||||| !! !|||!:!:!!|||| aTrpLeuProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisG 3164423 : ATGGTTACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATC : 3164479 173 : lnLeuIleGlyMetThrIleAlaAlaAsnIleAsnIleAlaCysAspSerLeuIle : 190 || !|||!.! !||||||..!..!!.! !:!:!!.!! ||||||||| ! lnAlaIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyr 3164480 : AAGCTATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATAC : 3164533 191 : SerGlyLeuLeuGlnGlnIleCysCysGlnIleGluIleLeuGlnTyrArgLeuTh : 209 !!!||||||||| .!.|||! !||||||.!!|||||||||:!!:!!||||||! ThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuAr 3164534 : ACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAG : 3164590 210 : rLysVal<->SerHisAspGlyHisValLeuAsnAsnCysValArgHisHisAspA : 227 !!!.||| !!!.!..!.! ! !! !:!!!!..!.|||!.!!:!|||||||||| gAsnValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspA 3164591 : GAACGTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATC : 3164647 228 : rgIleTyr{Ly} >>>> Target Intron 1 >>>> {s}TyrAlaGlnThr : 234 ||||||||{:!} 325 bp {!}!:!:!!:!!! ! rgIleTyr{Gl}++ ++{n}PheSerLysLys 3164648 : GTATATAC{CA}gt.........................ag{A}TTTTCGAAAAAG : 3164993 235 : ValAsnMetAsnPheThrLysIleIleAlaLeuGlnPheValValSerMetLeuVa : 253 |||||| .!.|||! ! !|||:!: !! !|||||| !:!!||||||! !|| ValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerVa 3164994 : GTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGT : 3165050 254 : lValCysAlaAsnLeuTyrLysLeuValMetAlaThrIleLeuAlaAspPheIleI : 272 |:!!||| !|||||||||::!:!!..!..! !! !!!: ... |||::: lIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValG 3165051 : GATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcg : 3165107 273 : leLeuMetLeuTyrThrAlaCysMetLeuAlaGlnIlePheLeuTyrCysTrpPhe : 290 ::::!:||||||:!! !|||! :!!.!!|||||||||! !|||||||||!:! luIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyr 3165108 : aaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTAC : 3165161 291 : GlyAsnGluLeuLysLeuLys : 297 |||||||||:!!|||! !||| GlyAsnGluValLysHisLys 3165162 : GGCAACGAAGTGAAACATAAG : 3165184 vulgar: CbirOr197 134 297 . KQ414646.1 3164367 3165184 + 375 M 77 231 G 0 3 M 18 54 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164368 3165184 375 + . gene_id 3 ; sequence CbirOr197 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3164368 3164657 . + . KQ414646.1 exonerate:protein2genome:local exon 3164368 3164657 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164658 3164659 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164658 3164982 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3164981 3164982 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164983 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164983 3165184 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164368 3165184 375 + . alignment_id 3 ; Query CbirOr197 ; Align 3164368 135 231 ; Align 3164602 212 54 ; Align 3164984 231 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr197 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 358 Query range: 120 -> 297 Target range: 3157797 -> 3158656 121 : AlaLeuTrpTyrValIleLeuValGluThrThrValGlyIleMetIleValGlySe : 139 .!!:!! ! ||| !! |||::: :::..! !.!!!!: !||| !!|| ThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrValArgSe 3157798 : ACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATATACGTGAGATC : 3157852 140 : rAlaPheThrAspGlyValGluArgLysLeuProTyrArgValTrpLeuProTyrA : 158 | !!!.! !||| ! !.!.||||||||| !!:!|||!.!|||:!!||||||| rLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrA 3157853 : GCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACG : 3157909 159 : spTyrSerProProThrIlePheTyrProThrTyrIleHisGlnLeuIleGlyMet : 176 ||||||||||| !! !!|||||| !! !|||! !:!!|||||| !|||!.! ! spTyrSerProAlaProIlePheIleLeuThrSerValHisGlnAlaIleAlaSer 3157910 : ATTACTCCCCTGCGCCCATTTTTATCCTTACCTCCGTCCATCAAGCTATAGCCTCG : 3157963 177 : ThrIleAlaAlaAsnIleAsnIleAlaCysAspSerLeuIleSerGlyLeuLeuGl : 195 ||||||..!..!!.! !.!:!!.!! |||!!!||| !!!!||||||||| ThrIleCysCysThrSerThrValThrValAspThrLeuTyrThrGlyLeuLeuIl 3157964 : ACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTATACACTGGCTTGTTGAT : 3158020 196 : nGlnIleCysCysGlnIleGluIleLeuGlnTyrArgLeuThrLysVal<->SerH : 213 .!.|||! !||||||.!!|||||||||:!!:!!||||||! !!!.||| !!!. eAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysThrG 3158021 : TAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAACTG : 3158077 214 : isAspGlyHisValLeuAsnAsnCysValArgHisHisAspArgIleTyr{Ly} : 230 !..!.! ! !! !:!!!!..!.|||!.!!:!||||||||||||||||||{:!} luGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIleTyr{Gl}++ 3158078 : AGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTATATAC{CA}gt : 3158130 231 : >>>> Target Intron 1 >>>> {s}TyrAlaGlnThrValAsnMetAsnPh : 239 325 bp {!}!:!:!!:!!! !|||||| .!.|| ++{n}PheSerLysLysValAsnGluGluPh 3158131 : .........................ag{A}TTTTCGAAAAAGGTGAACGAAGAATT : 3158480 240 : eThrLysIleIleAlaLeuGlnPheValValSerMetLeuValValCysAlaAsnL : 258 |! ! !|||:!: !! !|||||| !:!!||||||! !|||:!!||| !|||| eLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIleCysPheAsnL 3158481 : CAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTTCAATC : 3158537 259 : euTyrLysLeuValMetAlaThrIleLeuAlaAspPheIleIleLeuMetLeuTyr : 276 |||||::!:!!..!..! !! !!!: ... |||::: ::::!:|||||| euTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIleIleLeuTyr 3158538 : TTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaatcaTACTCTAC : 3158591 277 : ThrAlaCysMetLeuAlaGlnIlePheLeuTyrCysTrpPheGlyAsnGluLeuLy : 295 :!! !|||! :!!.!!|||||||||! !|||||||||!:!|||||||||:!!|| SerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGluValLy 3158592 : TCTTTCTGCACTATCACGCAGATATTTTACTATTGTTGGTACGGCAACGAAGTGAA : 3158648 296 : sLeuLys : 297 | !||| sAspLys 3158649 : AGATAAG : 3158656 vulgar: CbirOr197 120 297 . KQ414646.1 3157797 3158656 + 358 M 91 273 G 0 3 M 18 54 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157798 3158656 358 + . gene_id 4 ; sequence CbirOr197 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3157798 3158129 . + . KQ414646.1 exonerate:protein2genome:local exon 3157798 3158129 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158130 3158131 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158130 3158454 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3158453 3158454 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158455 3158656 . + . KQ414646.1 exonerate:protein2genome:local exon 3158455 3158656 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157798 3158656 358 + . alignment_id 4 ; Query CbirOr197 ; Align 3157798 121 273 ; Align 3158074 212 54 ; Align 3158456 231 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr197 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 324 Query range: 113 -> 297 Target range: 3180035 -> 3180667 114 : AsnLysAlaIleLysLysTyrAlaLeuTrpTyrValIleLeuValGluThrThrVa : 132 ||| ! ! !!:!||| !!|||:!! ! |||..!!!::!!||||||! !:!!|| AsnTyrLeuAspArgLysAsnAlaValArgTyrThrMetValValGluMetSerVa 3180036 : AATTATCTCGACAGGAAAAACGCTGTCAGATACACAATGGTAGTCGAGATGTCGGT : 3180090 133 : lGlyIleMetIleValGlySerAlaPheThrAspGlyValGluArgLysLeuProT : 151 |!.! ! |||:!!..!||| ! ! |||:!! ! !.!. !!!:!||| !!| lAlaSerThrIleLeuAsnSerLeuValThrAsnPheGlnHisGlyArgLeuThrT 3180091 : CGCCTCGACTATTTTAAACTCGTTAGTGACCAACTTTCAACACGGCAGACTAACCT : 3180147 152 : yrArgValTrpLeuProTyrAspTyrSerProProThrIlePheTyrProThrTyr : 169 |||||! !|||!!!||||||||||||!!! !! !!..!:!!||| !|||||| yrArgGlyTrpPheProTyrAspTyrThrThrAlaValLeuPheProLeuThrTyr 3180148 : ACAGAGGCTGGTTCCCTTACGATTACACGACCGCCGTACTTTTTCCATTGACATAC : 3180201 170 : IleHisGlnLeuIleGlyMetThrIleAlaAlaAsnIleAsnIleAlaCysAspSe : 188 !! ||||||:!! !!:!! !:!! !:!! |||:!!:!!:!! |||! AlaLeuGlnLeuLeuCysValLeuValTyrSerTrpIleHisValSerValAspIl 3180202 : GCTCTGCAGCTATTATGCGTGCTCGTATATTCCTGGATCCACGTTTCAGTGGATAT : 3180258 189 : rLeuIleSerGlyLeuLeuGlnGlnIleCysCysGlnIleGluIleLeuGlnTyrA : 207 !|||.!!! !|||||||||..!|||:!:|||||||||.!!!!:|||||| | eLeuPhePheGlyLeuLeuMetGlnLeuCysCysGlnPheAspIleLeuPheSerA 3180259 : TCTCTTCTTCGGACTGTTGATGCAACTGTGCTGTCAATTCGAcattctcttctctc : 3180315 208 : rgLeuThrLysVal<->SerHisAspGlyHisValLeuAsnAsnCysValArgHis : 224 ||...!:!!..:!! |||.!.:!! ! !||||||...!..|||:!!|||||| rgPheSerSerIleThrSerGluAsnLysGlyValLeuArgArgCysIleArgHis 3180316 : gtttcAGTAGCATAACGTCGGAGAACAAGGGTGTTTTACGAAGATGCATTCGTCAT : 3180369 225 : HisAspArgIleTyr{Ly} >>>> Target Intron 1 >>>> {s}TyrAl : 232 |||||||||||||||{::} 74 bp {:}! || HisAspArgIleTyr{Ar}++ ++{g}LeuAl 3180370 : CACGACAGAATTTAC{CG}gt.........................ag{T}TTAGC : 3180467 233 : aGlnThrValAsnMetAsnPheThrLysIleIleAlaLeuGlnPheValValSerM : 251 |:!!! !:!!||| !:!.!. ! !! !!: ! !|||||| !!! !|||. aGluIleMetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePheGlySerP 3180468 : TGAAATAATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTTCGGAAGCT : 3180524 252 : etLeuValValCysAlaAsnLeuTyrLysLeuValMetAlaThrIleLeuAla<-> : 269 !.:!!|||:!!||| !!:!||| !:!!|||:!!! ||| !||||||::! heMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleLeuSerThr 3180525 : TTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTCTCAGCACC : 3180578 270 : AspPheIleIleLeuMetLeuTyrThrAlaCysMetLeuAlaGlnIlePheLeuTy : 287 !!:|||:!! !!::...||| ::: :::||| !|||! !|||||||| GluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPheLeuTy 3180579 : GAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGCTTTCTTTA : 3180635 288 : rCysTrpPheGlyAsnGluLeuLysLeuLys : 297 |||||||!:!|||||||||:!!!:! !||| rCysTrpTyrGlyAsnGluValArgThrLys 3180636 : CTGTTGGTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: CbirOr197 113 297 . KQ414646.1 3180035 3180667 + 324 M 98 294 G 0 3 M 18 54 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 38 114 G 0 3 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180036 3180667 324 + . gene_id 5 ; sequence CbirOr197 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3180036 3180388 . + . KQ414646.1 exonerate:protein2genome:local exon 3180036 3180388 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3180389 3180390 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3180389 3180462 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3180461 3180462 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3180463 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180463 3180667 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180036 3180667 324 + . alignment_id 5 ; Query CbirOr197 ; Align 3180036 114 294 ; Align 3180333 212 54 ; Align 3180464 231 114 ; Align 3180581 269 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr197 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 235 Query range: 227 -> 354 Target range: 3178378 -> 3178917 228 : IleTyrLysTyrAlaGlnThrValAsnMetAsnPheThrLysIleIleAlaLeuGl : 246 ||| :::!:!.!!||||||||||||! ||| ! ! !!:||| !||||| IleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLeuGl 3178379 : atttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCTGCA : 3178433 247 : nPheValValSerMetLeuValValCysAlaAsnLeuTyrLysLeu<->ValMetA : 264 |||| !:!!||| ! !|||:!!||| !!:!:!!||||||:!! ..!!!: nPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrIleA 3178434 : ATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGATTA : 3178490 265 : laThrIleLeuAlaAspPheIleIleLeuMetLeuTyrThrAlaCysMetLeuAla : 282 ! !!.!! ! !:!!|||:!! ! ! ! !||| !..!|||||||||.!! snProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeuThr 3178491 : ATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACG : 3178544 283 : GlnIlePheLeuTyrCysTrpPheGlyAsnGluLeuLysLeuLys >>>> Targ : 298 |||:!:!:!||||||||||||||||||||||||:!!! !|||||| GlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys++ 3178545 : CAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAGgt......... : 3178594 299 : et Intron 1 >>>> SerLysSerLeuSerAsnSerIleTyrAsnIleThrTr : 310 155 bp |||:!!!.!:!!.!!.!.:!!||||||.!.!!: !|| ++SerGluLysValGlyGluAlaIleTyrGluMetAspTr 3178595 : ................agAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTG : 3178783 311 : pTyrThrLeuAspAspSerLysLysLysSerLeuLeuLeuIleMetLysArgSerM : 329 | .!!||| ! !..!! !!:!|||..!||||||||||||||| !||||||! pThrAlaLeuProThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerL 3178784 : GACGGCACTTCCCACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAA : 3178840 330 : etIleProIleGluPheAsnSerValValIleIleThrLeuAsnLeuAspSerPhe : 347 !|||:!!:!!.!.!..|||! ! !:!!:!!..!|||::! !!!:|||||| ysArgProValLysMetThrSerGlyHisValValValLeuSerAlaGluSerPhe 3178841 : AACGACCTGTTAAAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTT : 3178894 348 : ValSerLeuLeuLysAlaSer : 354 :!!|||:!! !!:! !||| MetSerValSerArgIleSer 3178895 : ATGTCTGTTAGTAGAATTTCC : 3178917 vulgar: CbirOr197 227 354 . KQ414646.1 3178378 3178917 + 235 M 34 102 G 0 3 M 36 108 5 0 2 I 0 151 3 0 2 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178379 3178917 235 + . gene_id 6 ; sequence CbirOr197 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3178379 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178379 3178591 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178592 3178593 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3178592 3178746 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3178745 3178746 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3178747 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178747 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178379 3178917 235 + . alignment_id 6 ; Query CbirOr197 ; Align 3178379 228 102 ; Align 3178484 262 108 ; Align 3178747 298 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr197 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 181 Query range: 228 -> 350 Target range: 3160720 -> 3162713 229 : TyrLysTyrAlaGlnThrValAsnMetAsnPheThrLysIleIleAlaLeuGlnPh : 247 !:!!:!!:!|||:!!! !:!!||| !!!.|||!:!! ! !!:||| !||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3160721 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3160775 248 : eValValSerMetLeuValValCysAlaAsnLeuTyrLysLeuValMetAlaThrI : 266 |:!!|||!!!! :!!..!:!!||| !||||||!:!::!|||..!..!.!!! !: eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3160776 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3160832 267 : leLeuAlaAspPheIleIleLeuMetLeuTyrThrAlaCysMetLeuAlaGlnIle : 284 !:! !:!!.!. !!:!! !|||!!:! !!:!! !!.! !!:!!!!!||||||||| alTyrSerGlnValLeuAlaLeuIleProPheMetValSerValPheAlaGlnIle 3160833 : TGTATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATA : 3160886 285 : PheLeuTyrCysTrpPheGlyAsnGluLeuLysLeuLysSerLysSerLeuSerAs : 303 |||! !! !||||||!:!||||||||| !|||:!!||| !:::..!! !!!!:! PheTyrCysCysTrpTyrGlyAsnGluThrLysValLysValArgAspGlnThrAs 3160887 : TTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGGTACGTGATCAAACAGA : 3160943 304 : nSerIleTyrAsnIle >>>> Target Intron 1 >>>> ThrTrpTyrTh : 312 !! !:::::::::||| 1627 bp !||| ! pPheLeuPheSerIle-+ -+AspTrpThrPr 3160944 : CTTCttattctcaatttt.........................tgGACTGGACACC : 3162597 313 : rLeuAspAspSerLysLysLysSerLeuLeuLeuIleMetLysArgSerMetIleP : 331 !!!!||| ! :!! |||::!!:! !||| !!!:|||! !|||:!! ! !! oPheAspLysAlaAlaLysArgAsnThrLeuThrMetMetMetArgAlaSerSerL 3162598 : ATTCGATAAAGCTGCTAAACGAAATACTCTAACCATGATGATGCGTGCATCGTCTC : 3162654 332 : roIleGluPheAsnSerValValIleIleThrLeuAsnLeuAspSerPheValSer : 349 !||||||.!!! !|||||| !:!::!!:!!:!!||||||||||||||||||:!! euIleGluIleIleSerValArgValLeuSerValAsnLeuAspSerPheValAla 3162655 : TGATCGAAATCATCAGCGTTCGTGTGCTCTCCGTGAATCTAGATTCGTTCGTCGCT : 3162708 350 : Leu : 350 ::: Val 3162709 : Gtc : 3162713 vulgar: CbirOr197 228 350 . KQ414646.1 3160720 3162713 + 181 M 80 240 5 0 2 I 0 1623 3 0 2 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160721 3162713 181 + . gene_id 7 ; sequence CbirOr197 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3160721 3160960 . + . KQ414646.1 exonerate:protein2genome:local exon 3160721 3160960 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3160961 3160962 . + . intron_id 1 ; splice_site "tt" KQ414646.1 exonerate:protein2genome:local intron 3160961 3162587 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3162586 3162587 . + . intron_id 0 ; splice_site "TG" KQ414646.1 exonerate:protein2genome:local cds 3162588 3162713 . + . KQ414646.1 exonerate:protein2genome:local exon 3162588 3162713 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160721 3162713 181 + . alignment_id 7 ; Query CbirOr197 ; Align 3160721 229 240 ; Align 3162588 309 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr197 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 117 -> 231 Target range: 3160053 -> 3160401 118 : LysLysTyrAlaLeuTrpTyrValIleLeuValGluThrThrValGlyIleMetIl : 136 !:!||| !:!!:!! |||..!:!!! !..!! ! !!:!!.! ! !:!: ArgLysLeuSerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValTr 3160054 : AGAAAGCTCTCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTATG : 3160108 137 : eValGlySerAlaPheThrAspGlyValGluArgLysLeuProTyrArgValTrpL : 155 :!! !||||||.!.|||! ! ! |||:!!|||||| !|||||||||| pMetLeuSerAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrpL 3160109 : GATGTTGTCGGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGGT : 3160165 156 : euProTyrAspTyrSerProProThr<->IlePheTyrProThrTyrIleHisGln : 172 |||||!:!||||||!!! !! !! ! |||||| !! !|||||| !:!!||| euProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGln 3160166 : TACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAG : 3160219 173 : LeuIleGlyMetThrIleAlaAlaAsnIleAsnIleAlaCysAspSerLeuIleSe : 191 !!!:!! !:!!! !.!! !.!!!.! ! !!!:!.! !|||!:!|||.!!|| PheValThrLeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheSe 3160220 : TTTGTAACTCTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCAG : 3160276 192 : rGlyLeuLeuGlnGlnIleCysCysGlnIleGluIleLeuGlnTyrArgLeuThrL : 210 |||||||||| !!.|||! !||||||.!!||||||||||||:!!||||||! !! rGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysS 3160277 : CGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGA : 3160333 211 : ysValSerHisAsp<->GlyHisValLeuAsnAsnCysValArgHisHisAspArg : 227 ..:!!!.!! !||| ! !:!! ! !!!..!.|||!.! !|||||| !!||| erIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrArg 3160334 : GCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGC : 3160387 228 : IleTyrLysTyr : 231 |||||||||!:! IleTyrLysPhe 3160388 : ATATACAAGTTT : 3160401 vulgar: CbirOr197 117 231 . KQ414646.1 3160053 3160401 + 164 M 46 138 G 0 3 M 51 153 G 0 3 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160054 3160401 164 + . gene_id 8 ; sequence CbirOr197 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160054 3160401 . + . KQ414646.1 exonerate:protein2genome:local exon 3160054 3160401 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160054 3160401 164 + . alignment_id 8 ; Query CbirOr197 ; Align 3160054 118 138 ; Align 3160195 164 153 ; Align 3160351 215 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr197 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 123 -> 198 Target range: 3153129 -> 3153354 124 : TyrValIleLeuValGluThrThrValGlyIleMetIleValGlySerAlaPheTh : 142 |||..! !!!!:!!!!:! ! !|||! !:!!:!: :!! !||| !||||| TyrThrTyrPheLeuAspIleLeuValValValLeuTrpIleThrSerTyrPheTh 3153130 : TACACATATTTCCTGGACATCTTGGTAGTCGTTTTATGGATAACATCGTACTTCAC : 3153184 143 : rAspGlyValGluArgLysLeuProTyrArgValTrpLeuProTyrAspTyrSerP : 161 |||| ! !...||||||... :::||||||||||||||||||||| !!!! rAspTyrArgArgArgLysPheLysPheArgValTrpLeuProTyrAspThrThrT 3153185 : GGACTACAGGcgcagaaaattcaaatttcgcgtCTGGTTACCTTACGACACTACTA : 3153241 162 : roProThrIlePheTyrProThrTyrIleHisGlnLeuIleGlyMetThrIleAla : 179 !!! ! !!:!!||| !! !! !||| !!!.|||:!!:!! !!! ! ! !::! hrGlnProValPheThrLeuIleTyrCysGlnGlnIleValCysThrTrpTyrSer 3153242 : CACAACCTGTCTTCACTCTGATCTACTGTCAACAGATCGTCTGCACGTGGTACAGC : 3153295 180 : AlaAsnIleAsnIleAlaCysAspSerLeuIleSerGlyLeuLeuGlnGlnIleCy : 198 !.!|||||||||:!! !||||||!!!|||.!!|||||||||:!! !|||||||| ValAsnIleAsnValIleCysAspCysLeuPheSerGlyLeuMetIleGlnIleCy 3153296 : GTGAATATTAACGTCATTTGCGACTGCCTGTTCAGCGGCCTGATGATACAGATTTG : 3153352 199 : s : 198 | s 3153353 : C : 3153354 vulgar: CbirOr197 123 198 . KQ414646.1 3153129 3153354 + 156 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153130 3153354 156 + . gene_id 9 ; sequence CbirOr197 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153130 3153354 . + . KQ414646.1 exonerate:protein2genome:local exon 3153130 3153354 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153130 3153354 156 + . alignment_id 9 ; Query CbirOr197 ; Align 3153130 124 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr197 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 228 -> 308 Target range: 3174931 -> 3175171 229 : TyrLysTyrAlaGlnThrValAsnMetAsnPheThrLysIleIleAlaLeuGlnPh : 247 !:!!:!!:!|||:!!! !:!!||| !!!.|||!:!! ! !!:||| !||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3174932 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3174986 248 : eValValSerMetLeuValValCysAlaAsnLeuTyrLysLeuValMetAlaThrI : 266 |:!!|||!!!! :!!..!:!!||| !||||||!:!::!|||..!..!.!!! !: eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3174987 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3175043 267 : leLeuAlaAspPheIleIleLeuMetLeuTyrThrAlaCysMetLeuAlaGlnIle : 284 !:! !:!!.!. !!:!! !|||!!:! !!:!! !!.! !!:!!!!!||||||||| alTyrSerGlnValLeuAlaLeuIleProPheMetValSerValPheAlaGlnIle 3175044 : TGTATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATA : 3175097 285 : PheLeuTyrCysTrpPheGlyAsnGluLeuLysLeuLysSerLysSerLeuSerAs : 303 |||! !! !||||||!:!||||||||| !|||:!!||| !:::..!! !!!!:! PheTyrCysCysTrpTyrGlyAsnGluThrLysValLysValArgAspGlnThrAs 3175098 : TTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGGTACGTGATCAAACAGA : 3175154 304 : nSerIleTyrAsnIle : 308 !! !:::::::::||| pPheLeuPheSerIle 3175155 : CTTCttattctcaatt : 3175171 vulgar: CbirOr197 228 308 . KQ414646.1 3174931 3175171 + 153 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174932 3175171 153 + . gene_id 10 ; sequence CbirOr197 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174932 3175171 . + . KQ414646.1 exonerate:protein2genome:local exon 3174932 3175171 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3174932 3175171 153 + . alignment_id 10 ; Query CbirOr197 ; Align 3174932 229 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr197 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 231 -> 293 Target range: 3153459 -> 3153645 232 : AlaGlnThrValAsnMetAsnPheThrLysIleIleAlaLeuGlnPheValValSe : 250 ||||||! !|||||| !!!..!! !!!.:!! ::!:!!||||||!.!:!!|| AlaGlnIleValAsnGluLysLeuGlyAsnValSerSerIleGlnPheAlaIleSe 3153460 : GCGCAAATAGTGAACGAGAAGCTTGGAAATGTCTCGAGTATACAGTTCGCGATAAG : 3153514 251 : rMetLeuValValCysAlaAsnLeuTyrLysLeuValMetAlaThrIleLeuAlaA : 269 |! !!.!:!!||| !|||||||||::!:!! !:!! ! !:!! ! !! rThrGlyAlaIleCysPheAsnLeuTyrArgMetSerValIleGluLeuGlyProL 3153515 : CACAGGAGCGATATGCTTCAATCTCTATCGAATGTCGGTGATAGAACTCGGTCCAA : 3153571 270 : spPheIleIleLeuMetLeuTyrThrAlaCysMetLeuAlaGlnIlePheLeuTyr : 287 ! |||:!: ! !:!: ! !|||!.!|||:!:|||||||||||||||! !||| ysPheValGluAlaLeuThrIleThrValCysLeuLeuAlaGlnIlePheTyrTyr 3153572 : AGTTTGTGGAAGCGTTAACTATCACAGTATGCTTACTCGCGCAGATATTTTACTAT : 3153625 288 : CysTrpPheGlyAsnGlu : 293 ||||||!::||||||::: CysTrpTyrGlyAsnAsp 3153626 : TGTTGGTAcggtaacgat : 3153645 vulgar: CbirOr197 231 293 . KQ414646.1 3153459 3153645 + 142 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153460 3153645 142 + . gene_id 11 ; sequence CbirOr197 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153460 3153645 . + . KQ414646.1 exonerate:protein2genome:local exon 3153460 3153645 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153460 3153645 142 + . alignment_id 11 ; Query CbirOr197 ; Align 3153460 232 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr197 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 137 -> 231 Target range: 3174323 -> 3174612 138 : GlySerAlaPheThrAspGlyValGluArgLysLeuProTyrArgValTrpLeu-P : 156 ..!||| !||||||! ! ! ! |||:!!|||||| !|||! !||||||#| SerSerIlePheThrAlaPheLysIleArgGluLeuProLeuArgGlyTrpLeu#P 3174324 : TCGTCGATCTTCACGGCTTTTAAGATCAGAGAGTTACCCCTTCGAGGATGGTTAAC : 3174379 157 : roTyrAspTyrSerProProThr<->IlePheTyrProThrTyrIleHisGlnLeu : 173 ||!:!||||||!!! !! !! ! |||||| !! !|||||| !:!!|||!!! roPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGlnPhe 3174380 : CTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAGTTT : 3174433 174 : IleGlyMetThrIleAlaAlaAsnIleAsnIleAlaCysAspSerLeuIleSerGl : 192 :!! !:!!! !.!! !.!!::! !! !|||!.!! !|||!:!|||.!!||||| ValThrLeuIlePheLeuThrSerAlaIleIleGlySerAspAsnLeuPheSerGl 3174434 : GTAACTCTGATATTCCTTACTTCTGCTATTATCGGTTCTGACAATCTATTCAGCGG : 3174490 193 : yLeuLeuGlnGlnIleCysCysGlnIleGluIleLeuGlnTyrArgLeuThrLysV : 211 ||||||| !!.|||! !||||||.!!||||||||||||:!!||||||! !!..: yLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysSerI 3174491 : ACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGAGCA : 3174547 212 : alSerHisAsp<->GlyHisValLeuAsnAsnCysValArgHisHisAspArgIle : 228 !!!.!! !||| ! !:!! ! !!!..!.|||!.! !|||||| !!|||||| leLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrArgIle 3174548 : TTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGCATA : 3174601 229 : TyrLysTyr : 231 ||||||!:! TyrLysPhe 3174602 : TACAAGTTT : 3174612 vulgar: CbirOr197 137 231 . KQ414646.1 3174323 3174612 + 133 M 18 54 F 0 1 M 8 24 G 0 3 M 51 153 G 0 3 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174324 3174612 133 + . gene_id 12 ; sequence CbirOr197 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174324 3174612 . + . KQ414646.1 exonerate:protein2genome:local exon 3174324 3174612 . + . insertions 6 ; deletions 0 ; frameshifts 1 KQ414646.1 exonerate:protein2genome:local similarity 3174324 3174612 133 + . alignment_id 12 ; Query CbirOr197 ; Align 3174324 138 54 ; Align 3174379 156 24 ; Align 3174406 164 153 ; Align 3174562 215 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr191 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 622 Query range: 5 -> 372 Target range: 3154927 -> 3156422 6 : IleMetGluPheThrPheLysValLeuSerValValGlyValTrpProProAspSe : 24 :!!:!!:!! !.!.:!! !!! !:!!:!! !|||:!!||||||||| || LeuLeuGlnLysGlnLeuGlnPheCysAlaMetCysGlyLeuTrpProProProSe 3154928 : CTACTGCAAAAACAACTGCAATTTTGCGCAATGTGCGGTCTCTGGCCACCGCCATC : 3154982 25 : rTrpThrSerSerPheLysArgAlaMetTyrAsnValTyrSerAlaPheIleThrL : 43 |! .!! !! !||||||||| ! |||::!|||!:!||| !!:!! !: rSerAlaProLeuPheLysArgPheAlaTyrSerValPheSerTrpTyrThrLeuI 3154983 : ATCAGCTCCGCTGTTTAAAAGATTCGCCTACTCTGTATTCTCGTGGTACACGTTAA : 3155039 44 : euMetIlePheThrLeuLeuIleProGlnLeuLeuAspIleIleLeuAsnValLys : 61 !!:!!:!:!:!! ! !:!!.!! !|||:!!:!!|||:!!|||:!!||||||! ! leLeuValTyrIleThrValPheSerGlnIleMetAspLeuIleValAsnValThr 3155040 : TACTGGTGTACATCACGGTTTTCAGCCAAATCATGGACCTAATCGTGAACGTGACG : 3155093 62 : ThrThrGluAspPheAlaAspIlePheTyrMetLeuLeuAlaValAlaMetSerCy : 80 ||| !!!:!!:|||::!|||! !||||||!!:||||||||| !|||!!:|||! ThrGlnAspGluPheSerAspAsnPheTyrIleLeuLeuAlaCysAlaIleSerLe 3155094 : ACTCAAGACGAGTTTAGCGACAATTTTTACATACTTCTGGCGTGTGCGATATCCTT : 3155150 81 : sPheLysMetThrAsnLeuLeuIleAsnArgLysAsnIleLysMetLeuLysAsnI : 99 ||| !!:!:!!|||! !!:!|||||||||:!! ! :!!! :!!: uGlnLysAlaGlnSerValLeuAsnSerArgLysAsnValHisArgMetIleAspL 3155151 : GCAGAAAGCACAGAGTGTGTTAAACAGTCGTAAGAATGTCCACCGTATGATCGATC : 3155207 100 : leLeuSerGluArgProPheIleProValGluAlaAspGluMetGluIleArgArg : 117 !!|||!:!.....!|||||| !|||! ! !!!:|||!!:|||||||||!!! euLeuAsnSerGluProPheHisProGluCysLysGluGluIleGluIleArgSer 3155208 : TTTTGAACAGCGAACCTTTTCATCCAGAATGTAAGGAGGAAATCGAGATAAGAAGT : 3155261 118 : LysTyrAspLysSerIle{Hi} >>>> Target Intron 1 >>>> {s}Gl : 125 !:! !..!:!! ! !{..} 119 bp {.}:: ArgIleSerGluHisAla{Ar}++ ++{g}Ar 3155262 : AGGATCTCCGAGCACGCC{AG}gt.........................ag{A}AG : 3155404 126 : nLysThrPheTrpTyrThrValLeuAlaGluValThrLeuMetTrpThrAlaLeuA : 144 !!..:!! !!::|||.!!:!!|||!.!||| !|||:!!||| !:!!!!!! gSerSerThrTyrTyrAlaIleLeuValGluSerThrValMetThrLeuSerPheG 3155405 : AAGCTCAACCTATTACGCGATTCTGGTCGAATCGACGGTGATGACTTTGTCTTTCG : 3155461 145 : laSerPheLeuThrAspPheArgSerGlyAsnLeuThrPheArgGluTrpThrPro : 162 .!:!!.!.|||! ! ..!||| !! !||| !!!:!||| ||| !||| lyAlaLeuLeuLysPro---GluSerArgProLeuProTyrArgIleTrpLeuPro 3155462 : GTGCACTGTTGAAACCA---GAATCACGTCCTTTACCGTATCGAATTTGGCTACCT : 3155512 163 : TyrAsnTyrSerGluThrMet<->PheCysValIleTyrValArgGlnLeuIleSe : 180 ! !||||||!!! ! !!!: !:!||| !||||||..!! !|||! !:!::! CysAsnTyrThrProLeuIleThrTyrCysSerIleTyrThrLeuGlnCysValAl 3155513 : TGCAATTACACCCCGTTAATTACTTACTGTTCGATTTACACTCTCCAATGTGTGGC : 3155569 181 : rThrSerMetGlyAlaMetValAsnIleAlaCysAspSerMetIleCysGlyPheI : 199 ! !:!!:!:.!!||||||:!!:!!:!!||||||||||||:!!|||||||||.!.: aLeuAlaLeuSerAlaMetMetHisValAlaCysAspSerLeuIleCysGlyLeuL 3155570 : ACTCGCTCTAAGCGCTATGATGCACGTCGCCTGCGACAGTTTGATCTGCGGCCTGC : 3155626 200 : leLeuHisValCysCysGlnPheGluIleLeuGluCysArgLeuLysLysValAla : 217 !:||||||..!! ! !!|||.!!|||||||||! |||||||||||| ::: euLeuHisThrTyrGlyGlnIleGluIleLeuGlyCysArgLeuLysThrIleLys 3155627 : TGTTACACACTTACGGCCAGATCGAGATCCTCGGTTGTCGTCTGAaaacgataaaa : 3155680 218 : LeuAspGlnLysAsnLeuArgMetGlyAspCysValHisGlnHisAspCysIlePh : 236 :::...:::::: !! ! ! ||||||!.! ! :!!:!! !|||!: ---GluAsnGluSerLysThrSerLysLeuCysValArgTyrAsnAsnLeuIleTy 3155681 : ---gaaaacgagagtAAGACGTCCAAGTTGTGCGTTCGTTACAACAACCTTATCTA : 3155734 237 : e{Ly} >>>> Target Intron 2 >>>> {s}PheAlaPheMetIleAsnG : 244 !{::} 69 bp {!}|||.!! !|||||||||| r{Ar}++ ++{g}PheThrAlaMetIleAsnG 3155735 : T{CG}gt.........................ag{A}TTCACCGCTATGATAAACG : 3155827 245 : luHisPheLysProIleIleThrIleGlnPheIleValSerMetLeuValValCys : 262 ||!!.|||:!! ! ||| !! !|||||| ||||||! !|||!.!:!!||| luGlnPheGluMetAlaIlePheThrGlnPheAlaValSerThrLeuAlaIleCys 3155828 : AGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGTGAGTACGCTGGCGATATGC : 3155881 263 : SerAsnLeuTyrGlnLeuAlaLysValThrLeuAsn<->AlaGluSerLeuThrLe : 280 ! !|||||||||! !|||.!! ! ! !:!!!.. !..!! !:!! !:! PheAsnLeuTyrLeuLeuThrGlySerAspValThrProIleArgTyrValGluIl 3155882 : TTCAATCTTTACCTATTAACAGGATCAGATGTGACGCCGATTAGGTATGTGGAAAT : 3155938 281 : uMetLeuTyrThrThrSerMetLeuThrGlnIleLeuIleTyrCysTrpPheGlyA : 299 !!!::!!|||!:!!:!!!!|||||||||||||||!!!||||||||||||!:!|||| eIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysTrpTyrGlyA 3155939 : AATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTGGTACGGGA : 3155995 300 : snGluValLysIleLys >>>> Target Intron 3 >>>> SerValGlnL : 308 |||||||||||:!:||| 73 bp |||:!!:!!: snGluValLysLeuLys++ ++SerLeuGluI 3155996 : ACGAAGTTAAGCTGAAGgt.........................agAGCCTCGAGA : 3156095 309 : euAlaAlaAsnIlePheGluIleGluTrpLeuLysLeuAspArgSerSerLysLys : 326 !!:!! !! ||||||.!.:!!!!:||| ! !!!!|||!:!:!!!!!|||::! leSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAlaThrLysArg 3156096 : TTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGCTACAAAACGA : 3156149 327 : AspLeuLeuIleIleMetAsnArgSerLeuValProIleGluPheSerSerAlaTy : 345 :!!:!!|||! !!!:|||! |||:!!! ! !|||||||||.!!! !|||!.! AsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleIleSerValAr 3156150 : AATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCATCAGCGTTCG : 3156206 346 : rIleIleThrMetAsnValAspSerPheValSer >>>> Target Intron 4 : 357 !:!::!!:!!:!!|||:!!||||||||||||:!! 133 bp gValLeuSerValAsnLeuAspSerPheValAla++ 3156207 : TGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.................... : 3156244 358 : >>>> LeuLeuLysThrSerTyrSerAlaTyrThrLeuLeuLysGlnMetGlu : 372 |||||||||||||||||||||||||||!.!:!!|||:!!!:: ||| ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGlnArgGlyGlu 3156245 : .....agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAACGCGGCGAA : 3156422 vulgar: CbirOr191 5 372 . KQ414646.1 3154927 3156422 + 622 M 118 354 S 0 2 5 0 2 I 0 115 3 0 2 S 1 1 M 25 75 G 1 0 M 19 57 G 0 3 M 48 144 G 1 0 M 18 54 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 37 111 G 0 3 M 30 90 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 129 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3154928 3156422 622 + . gene_id 1 ; sequence CbirOr191 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3154928 3155283 . + . KQ414646.1 exonerate:protein2genome:local exon 3154928 3155283 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3155284 3155285 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3155284 3155402 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3155401 3155402 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3155403 3155738 . + . KQ414646.1 exonerate:protein2genome:local exon 3155403 3155738 . + . insertions 3 ; deletions 2 KQ414646.1 exonerate:protein2genome:local splice5 3155739 3155740 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3155739 3155807 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3155806 3155807 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3155808 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155808 3156012 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156013 3156014 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156013 3156085 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3156084 3156085 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156086 3156241 . + . KQ414646.1 exonerate:protein2genome:local exon 3156086 3156241 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156242 3156243 . + . intron_id 4 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156242 3156374 . + . intron_id 4 KQ414646.1 exonerate:protein2genome:local splice3 3156373 3156374 . + . intron_id 3 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156375 3156422 . + . KQ414646.1 exonerate:protein2genome:local exon 3156375 3156422 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3154928 3156422 622 + . alignment_id 1 ; Query CbirOr191 ; Align 3154928 6 354 ; Align 3155404 125 75 ; Align 3155479 151 57 ; Align 3155539 170 144 ; Align 3155683 219 54 ; Align 3155809 238 111 ; Align 3155923 275 90 ; Align 3156086 305 156 ; Align 3156375 357 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr191 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 447 Query range: 1 -> 304 Target range: 3179607 -> 3180667 2 : GluLysAlaLysIleMetGluPheThrPheLysValLeuSerValValGlyValTr : 20 :::||| :::..! ||| ||||||:!!! !||| !|| LysLysLysMetLysValSerValLeuPheThrPheLeuSerIleGlyGlyCysTr 3179608 : aagaagaagatgaaagtATCGGtactttttacatttctcaGTATCGGTGGCTGTTG : 3179662 21 : pProProAspSerTrpThrSerSerPheLysArgAlaMetTyrAsnValTyrSerA : 39 | !||| !||||||:!!|||!!!!:!|||! !|||!!:||||||||||||!!!! pArgProIleSerTrpSerSerThrTyrLysThrAlaIleTyrAsnValTyrThrV 3179663 : GAGACCGATCTCGTGGTCTTCGACGTACAAAACGGCAATCTACAATGTCTACACCG : 3179719 40 : laPheIleThrLeuMetIlePheThrLeuLeuIleProGlnLeuLeuAspIleIle : 57 .!.!!:!! !:!!||| ! !!!.!!!!:!!:!! !!||| !!!! !! !!!: alLeuValLeuIleMetGlyValAsnPheMetValSerGln---PheGlySerMet 3179720 : TTCTCGTATTAATCATGGGTGTTAATTTCATGGTTTCGCAA---TTTGGCAGCATG : 3179770 58 : LeuAsnValLysThrThrGluAspPheAlaAspIlePheTyrMetLeuLeuAlaVa : 76 !!!!.!:!!:!!|||..!:!!||||||!.!|||:!! !|||!!:! !:!!:!!|| PheThrIleGluThrValGlnAspPheValAspLeuThrTyrIleCysValSerVa 3179771 : TTCACCATAGAAACCGTACAAGATTTCGTCGACCTTACTTACATATGCGTCTCCGT : 3179827 77 : lAlaMetSerCysPheLysMetThrAsnLeuLeuIleAsnArgLysAsnIleLysM : 95 | !:!:.!!|||! !|||:!!:!!|||:!!:!!.!! !!||||||:!!|||! ! lPheValGlyCysCysLysLeuSerAsnValValPheTyrArgLysAspIleIleA 3179828 : GTTCGTCGGTTGTTGCAAGCTGTCAAACGTGGTGTTCTATCGGAAAGATATCATAG : 3179884 96 : etLeuLysAsnIleLeuSerGluArgProPheIleProValGluAlaAspGluMet : 113 |||! !||||||!!!! !||| !|||! ! ! ! !.!. !!!:||| spLeuMetAsnIlePheMetGluAspProCysAlaCysSerAsnLysGluGluAsp 3179885 : ACCTGATGAACATCTTCATGGAGGATCCTTGTGCATGTTCGAACAAGGAGGAGGAC : 3179938 114 : GluIleArgArgLysTyrAspLysSerIle{Hi} >>>> Target Intron 1 : 124 :!!:!:!:! !!:!|||||| ! ..!:!!{!.} 77 bp GlnValGlnAlaArgTyrAspAspGlnLeu{Ar}++ 3179939 : CAGGTGCAAGCGAGATACGACGATCAATTA{CG}gt.................... : 3179975 125 : >>>> {s}GlnLysThrPheTrpTyrThrValLeuAlaGluValThrLeuMetT : 140 {.}:!!!!..!! !! ! ||||||:!!:!!!.!|||:!!:!!:!! ! ++{g}LysAsnAlaValArgTyrThrMetValValGluMetSerValAlaS 3179976 : .....ag{G}AAAAACGCTGTCAGATACACAATGGTAGTCGAGATGTCGGTCGCCT : 3180096 141 : rpThrAlaLeuAlaSerPheLeuThrAspPheArgSerGlyAsnLeuThrPheArg : 158 !||| !||| !|||!!.:!!|||:!!|||!:! !|||!..||||||!:!||| erThrIleLeuAsnSerLeuValThrAsnPheGlnHisGlyArgLeuThrTyrArg 3180097 : CGACTATTTTAAACTCGTTAGTGACCAACTTTCAACACGGCAGACTAACCTACAGA : 3180150 159 : GluTrpThrProTyrAsnTyr<->SerGluThrMetPheCysValIleTyrValAr : 176 ! ||| !||||||:!!||| !!!! ..!:!:||| :!!! !|||!.!! GlyTrpPheProTyrAspTyrThrThrAlaValLeuPheProLeuThrTyrAlaLe 3180151 : GGCTGGTTCCCTTACGATTACACGACCGCCGTACTTTTTCCATTGACATACGCTCT : 3180207 177 : gGlnLeuIleSerThrSerMetGlyAlaMetValAsnIleAlaCysAspSerMetI : 195 !||||||:!!!!!..! !:!: !:!! !:!!:!!:!!:!! |||! !:!:. uGlnLeuLeuCysValLeuValTyrSerTrpIleHisValSerValAspIleLeuP 3180208 : GCAGCTATTATGCGTGCTCGTATATTCCTGGATCCACGTTTCAGTGGATATTCTCT : 3180264 196 : leCysGlyPheIleLeuHisValCysCysGlnPheGluIleLeuGluCysArgLeu : 213 !!! !|||.!.:!::!!!!.:!!||||||||||||!!:|||||| |||... hePheGlyLeuLeuMetGlnLeuCysCysGlnPheAspIleLeuPheSerArgPhe 3180265 : TCTTCGGACTGTTGATGCAACTGTGCTGTCAATTCGAcattctcttctctcgtttc : 3180318 214 : LysLysValAlaLeuAspGlnLysAsnLeuArgMetGlyAspCysValHisGlnHi : 232 !..!..:!!.!!! !!!:.!.|||..!:!! :!: !! |||:!!!.!!!.|| SerSerIleThrSerGluAsnLysGlyVal---LeuArgArgCysIleArgHisHi 3180319 : AGTAGCATAACGTCGGAGAACAAGGGTGTT---TTACGAAGATGCATTCGTCATCA : 3180372 233 : sAspCysIlePhe{Ly} >>>> Target Intron 2 >>>> {s}PheAlaP : 240 |||| ! |||!:!{::} 74 bp {:}!!.||| sAspArgIleTyr{Ar}++ ++{g}LeuAlaG 3180373 : CGACAGAATTTAC{CG}gt.........................ag{T}TTAGCTG : 3180470 241 : heMetIleAsnGluHisPheLysProIleIleThrIleGlnPheIleValSerMet : 258 !!:!!:|||!!: !.!.:!!! !! !!: ! !||||||.!!! !|||.!. luIleMetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePheGlySerPhe 3180471 : AAATAATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTTCGGAAGCTTT : 3180524 259 : LeuValValCysSerAsnLeuTyrGlnLeuAlaLysVal<->ThrLeuAsnAlaGl : 276 :!!|||:!!||| !!:!||| !|||||| !!!.!.! ! !|||!:!.!!|| MetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleLeuSerThrGl 3180525 : ATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTCTCAGCACCGA : 3180581 277 : uSerLeuThrLeuMetLeuTyrThrThrSerMetLeuThrGlnIleLeuIleTyrC : 295 |! !|||.!! !!::...||| :::|||:::||| !|||! !!!!:!!|||| uPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPheLeuTyrC 3180582 : ATTCTTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGCTTTCTTTACT : 3180638 296 : ysTrpPheGlyAsnGluValLysIleLys : 304 |||||!:!||||||||||||!:!! ||| ysTrpTyrGlyAsnGluValArgThrLys 3180639 : GTTGGTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: CbirOr191 1 304 . KQ414646.1 3179607 3180667 + 447 M 51 153 G 1 0 M 70 210 S 0 2 5 0 2 I 0 73 3 0 2 S 1 1 M 41 123 G 0 3 M 58 174 G 1 0 M 12 36 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 34 102 G 0 3 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3179608 3180667 447 + . gene_id 2 ; sequence CbirOr191 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3179608 3179972 . + . KQ414646.1 exonerate:protein2genome:local exon 3179608 3179972 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3179973 3179974 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3179973 3180049 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3180048 3180049 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3180050 3180388 . + . KQ414646.1 exonerate:protein2genome:local exon 3180050 3180388 . + . insertions 3 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3180389 3180390 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3180389 3180462 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3180461 3180462 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3180463 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180463 3180667 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3179608 3180667 447 + . alignment_id 2 ; Query CbirOr191 ; Align 3179608 2 153 ; Align 3179761 54 210 ; Align 3180051 125 123 ; Align 3180177 166 174 ; Align 3180351 225 36 ; Align 3180464 238 102 ; Align 3180569 272 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr191 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 439 Query range: 6 -> 357 Target range: 3159629 -> 3162713 7 : MetGluPheThrPheLysValLeuSerValValGlyValTrpProProAspSerTr : 25 :!!:!!!!.:!!!!.|||..!|||!!!:!! !||| ! !||| ||||| LeuGlnLeuSerLeuLysThrLeuThrIleCysGlyTyrIleArgProThrSerTr 3159630 : TTGCAATTGTCGTTGAAAACTTTGACGATTTGCGGCTACATAAGGCCAACATCGTG : 3159684 26 : pThrSerSerPheLysArgAlaMetTyrAsnValTyrSerAlaPheIleThrLeuM : 44 |! !||| !! !!:! !:!:|||||||||:!!!!!!.! !:!!..!:!!: pLysSerProGlyLeuLysLeuLeuTyrAsnValHisThrValThrValValValV 3159685 : GAAGTCACCGGGGCTAAAGCTTCTCTATAACGTACACACGGTTACTGTAGTGGTAG : 3159741 45 : etIlePheThrLeuLeuIleProGlnLeuLeuAspIleIleLeuAsnValLysThr : 62 !::!! !|||!!!!!!:!! !!|||:!!||||||||||||...||||||:!!!.! alLeuSerThrPhePheValAlaGlnIleLeuAspIleIlePheAsnValGluAsn 3159742 : TTCTTAGCACGTTTTTCGTCGCCCAGATATTggacattattttcaacgtgGAGAAT : 3159795 63 : ThrGluAspPheAlaAspIlePheTyrMetLeuLeuAlaValAlaMetSerCysPh : 81 !!!:!!:|||::!|||! !|||! !!!: !! !..!||| !! ||| ! GlnAspGluPheSerAspAsnPheCysIleThrCysCysValMetAsnSerLeuGl 3159796 : CAAGACGAGTTTAGCGACAATTTCTGCATAACGTGCTGCGTGATGAACAGCCTTGG : 3159852 82 : eLysMetThrAsnLeuLeuIleAsnArgLysAsnIleLysMetLeuLysAsnIleL : 100 |||:!! !!:!|||||||||...|||:!!! |||:!!! |||! !:!! | yLysLeuTyrSerLeuLeuIleGlyArgGluMetIleGlnAsnLeuIleAspSerL 3159853 : AAAGTTGTACAGCTTGCTGATAGGACGAGAAATGATCCAAAATTTAATAGACTCGC : 3159909 101 : euSerGluArgProPheIleProValGluAlaAspGluMetGluIleArgArgLys : 118 ||..!... !|||.!!! |||:!!!!:! !! |||! ||||||||| !!:! euGlnSerAspProLeuArgProLeuAspGluValGluAsnGluIleArgLeuArg 3159910 : TACAAAGTGACCCTCTTAGGCCGTTGGACGAAGTGGAGAATGAAATTCGATTGAGA : 3159963 119 : TyrAspLysSerIle{Hi} >>>> Target Intron 1 >>>> {s}GlnLy : 126 :!!!!:|||!!!|||{.!} 73 bp {.}:!! HisGluLysThrIle{Gl}++ ++{u}LysLe 3159964 : CACGAGAAGACAATC{GA}gt.........................ag{A}AAGCT : 3160060 127 : sThrPheTrpTyrThrValLeuAlaGluValThrLeuMetTrpThrAlaLeuAlaS : 145 :!!.!. |||||||||! !.!!! !:!!!:! !! ! ..! !:!! !| uSerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValTrpMetLeuS 3160061 : CTCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTATGGATGTTGT : 3160117 146 : erPheLeuThrAspPheArgSerGlyAsnLeuThrPheArgGluTrpThrProTyr : 163 || !:!!|||! ||||||! ! !!.!.||| !!.!!|||! !||| !|||!:! erAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrpLeuProPhe 3160118 : CGGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGGTTACCTTTC : 3160171 164 : AsnTyrSerGluThrMet<-><->PheCysValIleTyrValArgGlnLeuIleSe : 180 :!!|||!!!! |||:!! ||| !!:!!! !|||!.! !|||!!!:!!!! AspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGlnPheValTh 3160172 : GATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAGTTTGTAAC : 3160228 181 : rThrSerMetGlyAlaMetValAsnIleAlaCysAspSerMetIleCysGlyPheI : 199 ! !! !.!. !.!!! !.!! !!!:!.! !|||!:!:!:.!! !!|||.!.: rLeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheSerGlyLeuL 3160229 : TCTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCAGCGGACTGT : 3160285 200 : leLeuHisValCysCysGlnPheGluIleLeuGluCysArgLeuLysLysValAla : 217 !::!!|||:!!! !||||||||||||||||||:!! !|||||||||!..:!! ! euIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysSerIleLys 3160286 : TGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGAGCATTAAA : 3160339 218 : LeuAspGlnLysAsnLeuArgMetGlyAspCysValHisGlnHisAspCysIlePh : 236 ! !||| !:!.!.! ! ! ! !.!.|||!.! !!!.||| !! !!|||!: ProAsp---ArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrArgIleTy 3160340 : CCTGAC---AGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGCATATA : 3160393 237 : e{Ly} >>>> Target Intron 2 >>>> {s}PheAlaPheMetIleAsnG : 244 !{||} 328 bp {|}|||||| !!:||||||! r{Ly}++ ++{s}PheAlaGluIleIleAsnA 3160394 : C{AA}gt.........................ag{A}TTCGCTGAAATTATAAACG : 3160745 245 : luHisPheLysProIleIleThrIleGlnPheIleValSerMetLeuValValCys : 262 ! ! |||!.. !! !!:.!!! ||||||:!:|||!!!! :!!..!:!!||| laLysPheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThrMetCys 3160746 : CGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACAATGTGC : 3160799 263 : SerAsnLeuTyrGlnLeuAlaLysValThrLeuAsnAlaGluSerLeuThrLeuMe : 281 ! !||||||!:!!:!|||.!!:!!..!! !:!! !!:!!:!! !|||.!!|||!! PheAsnLeuPheArgLeuThrGlnThrLysValTyrSerGlnValLeuAlaLeuIl 3160800 : TTCAACCTCTTTCGACTGACACAGACCAAGGTGTATTCGCAAGTTTTAGCATTGAT : 3160856 282 : tLeuTyrThrThrSerMetLeuThrGlnIleLeuIleTyrCysTrpPheGlyAsnG : 300 :! !!:!! !..!|||:!!!!!.!!||||||!!! !! !||||||!:!||||||| eProPheMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnG 3160857 : ACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACG : 3160913 301 : luValLys{Il} >>>> Target Intron 3 >>>> {e}LysSerValGln : 307 ||..!|||{:!} 1627 bp {!}|||..! !!:: luThrLys{Va}+- ++{l}LysGluProArg 3160914 : AGACCAAA{GT}ga.........................ag{A}AAAGAGCCTCga : 3162561 308 : LeuAlaAlaAsnIlePheGluIleGluTrpLeuLysLeuAspArgSerSerLysLy : 326 |||:!!:!:!!:||| ! !!!!|||!:!:!!:!!|||:: AspPhe***TyrHisPheGlnLeuAspTrpThrProPheAspLysAlaAlaLysAr 3162562 : gatttttaatatcatttcCAACTGGACTGGACACCATTCGATAAAGCTGCTAAACG : 3162618 327 : sAspLeuLeuIleIleMetAsnArgSerLeuValProIleGluPheSerSerAlaT : 345 !:!! !|||! !!!:|||! |||:!!! ! !! !||||||.!!! !|||!.! gAsnThrLeuThrMetMetMetArgAlaSerSerLeuIleGluIleIleSerValA 3162619 : AAATACTCTAACCATGATGATGCGTGCATCGTCTCTGATCGAAATCATCAGCGTTC : 3162675 346 : yrIleIleThrMetAsnValAspSerPheValSerLeu : 357 !:!::!!:!!:!!|||:!!||||||||||||:!!::: rgValLeuSerValAsnLeuAspSerPheValAlaVal 3162676 : GTGTGCTCTCCGTGAATCTAGATTCGTTCGTCGCTGtc : 3162713 vulgar: CbirOr191 6 357 . KQ414646.1 3159629 3162713 + 439 M 117 351 S 0 2 5 0 2 I 0 69 3 0 2 S 1 1 M 45 135 G 0 6 M 50 150 G 1 0 M 16 48 S 0 2 5 0 2 I 0 324 3 0 2 S 1 1 M 65 195 S 0 2 5 0 2 I 0 1623 3 0 2 S 1 1 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3159630 3162713 439 + . gene_id 3 ; sequence CbirOr191 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3159630 3159982 . + . KQ414646.1 exonerate:protein2genome:local exon 3159630 3159982 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3159983 3159984 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3159983 3160055 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3160054 3160055 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3160056 3160397 . + . KQ414646.1 exonerate:protein2genome:local exon 3160056 3160397 . + . insertions 6 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3160398 3160399 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3160398 3160725 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3160724 3160725 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3160726 3160923 . + . KQ414646.1 exonerate:protein2genome:local exon 3160726 3160923 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3160924 3160925 . + . intron_id 3 ; splice_site "GA" KQ414646.1 exonerate:protein2genome:local intron 3160924 3162550 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3162549 3162550 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3162551 3162713 . + . KQ414646.1 exonerate:protein2genome:local exon 3162551 3162713 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3159630 3162713 439 + . alignment_id 3 ; Query CbirOr191 ; Align 3159630 7 351 ; Align 3160057 125 135 ; Align 3160198 170 150 ; Align 3160348 221 48 ; Align 3160727 238 195 ; Align 3162552 304 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr191 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 368 Query range: 125 -> 357 Target range: 3164322 -> 3165423 126 : LysThrPheTrpTyrThrValLeuAlaGluValThrLeuMetTrpThrAlaLeuAl : 144 !!.|||.!! ! ||| ! !||| ! !:!! ! !.!.|||! ! !:!! AsnThrIleGlyTyrTrpSerLeuLeuLeuIleCysAlaPheTrpIleTyrValAr 3164323 : AACACGATTGGCTACTGGAGTTTACTATTAATTTGTGCGTTCTGGATATACGTGAG : 3164377 145 : aSerPheLeuThrAspPheArgSerGlyAsnLeuThrPheArgGluTrpThrProT : 163 !|||.!!||||||||||||!!!||| !!!!.|||! !||||||! !||| !|||| gSerLeuLeuThrAspPheSerSerArgLysLeuMetPheArgAlaTrpLeuProT 3164378 : ATCGCTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGCATGGTTACCCT : 3164434 164 : yrAsnTyrSerGluThr<->MetPheCysValIleTyrValArgGlnLeuIleSer : 180 ||:!!|||||| .!! !!:||| !:!!! !!:!|||!.!||| !|||:!! yrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAlaIleAla 3164435 : ACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCC : 3164488 181 : ThrSerMetGlyAlaMetValAsnIleAlaCysAspSerMetIleCysGlyPheIl : 199 .!!!!!!!: !!..!! !!:!:!!.!! ||||||:!: ! !|||!!.:! AlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLe 3164489 : GCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTT : 3164545 200 : eLeuHisValCysCysGlnPheGluIleLeuGluCysArgLeuLysLysValAlaL : 218 ::!!:!!:!!! !||||||||||||||||||||| !||||||!:!!!.||| ! uIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysT 3164546 : GATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAA : 3164602 219 : euAspGlnLysAsnLeuArgMetGlyAspCysValHisGlnHisAspCysIlePhe : 236 !!!:||| ! :!! !:!! !.!.|||!.!!!.!!.|||||| !!|||!:! hrGluGlnAspAsp---SerValLysGlnCysAlaGlnHisHisAspArgIleTyr 3164603 : CTGAGCAGGATGAC---TCTGTGAAGCAATGTGCTCAACATCACGATCGTATATAC : 3164653 237 : LysPheAlaPhe >>>> Target Intron 1 >>>> MetIleAsnGluHis : 245 :!!! !.!||| 325 bp ! !:!:||||||.!. Gln***ValPhe++ +-LysValAsnGluGlu 3164654 : CAGTAAGTTTTCgt.........................aaAAGGTGAACGAAGAA : 3165005 246 : PheLysProIleIleThrIleGlnPheIleValSerMetLeuValValCysSerAs : 264 ||||||! !|||:!:! ! !|||||| !:!!||||||! !|||:!!|||! !|| PheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIleCysPheAs 3165006 : TTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTTCAA : 3165062 265 : nLeuTyrGlnLeuAlaLysValThrLeuAsnAlaGluSerLeuThrLeuMetLeuT : 283 |||||||!:!:!!.!!:!!:!!! !:!!:!:...::: ::: ::::!:|||| nLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIleIleLeuT 3165063 : TCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaatcaTACTCT : 3165119 284 : yrThrThrSerMetLeuThrGlnIleLeuIleTyrCysTrpPheGlyAsnGluVal : 301 ||:!! !!!!! :!!|||||||||!!! !|||||||||!:!|||||||||||| yrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGluVal 3165120 : ACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGGCAACGAAGTG : 3165173 302 : LysIleLysSerValGlnLeuAla{A} >>>> Target Intron 2 >>>> : 310 ||| !||| !! !!!.! ! {!} 80 bp LysHisLysValAspHisCysHis{A}-+ +- 3165174 : AAACATAAGGTTGATCATTGTcac{g}at.........................at : 3165279 311 : {la}AsnIlePheGluIleGluTrpLeuLysLeuAspArgSerSerLysLysAspL : 328 { !}! ||||||.!.! !!!:||| !...|||:!!!.!!:! !! !:!! | {sp}MetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArgAlaL 3165280 : {AC}ATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGAGCAC : 3165334 329 : euLeuIleIleMetAsnArgSerLeuValProIleGluPheSerSerAlaTyrIle : 346 ||||||||!!:|||!..|||:!!:!! !||||||||||||!!!||| !:!!:!! euLeuIleMetMetArgArgAlaValArgProIleGluPheThrSerIleHisVal 3165335 : TTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCACGTT : 3165388 347 : IleThrMetAsnValAspSerPheValSerLeu : 357 :!!:!!:!!|||:!!!!:||||||:!!:!!:!! ValSerValAsnLeuGluSerPheMetAlaVal 3165389 : GTCTCTGTGAATCTCGAATCCTTCATGGCAGTC : 3165423 vulgar: CbirOr191 125 357 . KQ414646.1 3164322 3165423 + 368 M 43 129 G 0 3 M 54 162 G 1 0 M 17 51 5 0 2 I 0 321 3 0 2 M 69 207 S 0 1 5 0 2 I 0 76 3 0 2 S 1 2 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164323 3165423 368 + . gene_id 4 ; sequence CbirOr191 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3164323 3164667 . + . KQ414646.1 exonerate:protein2genome:local exon 3164323 3164667 . + . insertions 3 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3164668 3164669 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164668 3164992 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3164991 3164992 . + . intron_id 0 ; splice_site "AA" KQ414646.1 exonerate:protein2genome:local cds 3164993 3165200 . + . KQ414646.1 exonerate:protein2genome:local exon 3164993 3165200 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165201 3165202 . + . intron_id 2 ; splice_site "at" KQ414646.1 exonerate:protein2genome:local intron 3165201 3165280 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3165279 3165280 . + . intron_id 1 ; splice_site "AT" KQ414646.1 exonerate:protein2genome:local cds 3165281 3165423 . + . KQ414646.1 exonerate:protein2genome:local exon 3165281 3165423 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164323 3165423 368 + . alignment_id 4 ; Query CbirOr191 ; Align 3164323 126 129 ; Align 3164455 169 162 ; Align 3164617 224 51 ; Align 3164993 241 207 ; Align 3165283 311 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr191 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 336 Query range: 125 -> 357 Target range: 3157794 -> 3158895 126 : LysThrPheTrpTyrThrValLeuAlaGluValThrLeuMetTrpThrAlaLeuAl : 144 !!.|||.!! ! ||| ! ||| :::::: !.!.!::! ! !:!! AsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrValAr 3157795 : AACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATATACGTGAG : 3157849 145 : aSerPheLeuThrAspPheArgSerGlyAsnLeuThrPheArgGluTrpThrProT : 163 !|||.!!|||! !||||||!!!!:! !!!!.|||! !||||||! !|||! !|||| gSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProT 3157850 : ATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCT : 3157906 164 : yrAsnTyrSerGluThr<->MetPheCysValIleTyrValArgGlnLeuIleSer : 180 ||:!!|||||| .!! !!:||| !:!!! !! !|||!.!||| !|||:!! yrAspTyrSerProAlaProIlePheIleLeuThrSerValHisGlnAlaIleAla 3157907 : ACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTCCGTCCATCAAGCTATAGCC : 3157960 181 : ThrSerMetGlyAlaMetValAsnIleAlaCysAspSerMetIleCysGlyPheIl : 199 :!!!!!!!: !!..!! !!.!:!!.!! |||!!!:!: ! !|||!!.:! SerThrIleCysCysThrSerThrValThrValAspThrLeuTyrThrGlyLeuLe 3157961 : TCGACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTATACACTGGCTTGTT : 3158017 200 : eLeuHisValCysCysGlnPheGluIleLeuGluCysArgLeuLysLysValAlaL : 218 ::!!:!!:!!! !||||||||||||||||||||| !||||||!:!!!.||| ! uIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysT 3158018 : GATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAA : 3158074 219 : euAspGlnLysAsnLeuArgMetGlyAspCysValHisGlnHisAspCys >>>> : 235 !!!:||| ! :!! !:!! !.!.|||!.!!!.!!.|||||| !! hrGluGlnAspAsp---SerValLysGlnCysAlaGlnHisHisAspArg-+ 3158075 : CTGAGCAGGATGAC---TCTGTGAAGCAATGTGCTCAACATCACGATCGTat.... : 3158124 236 : Target Intron 1 >>>> IlePheLysPheAlaPheMetIleAsnGluHis : 245 325 bp ! !! !!:!|||:!! ! !:!:||||||.!. +-ThrCysArgPheSerLysLysValAsnGluGlu 3158125 : .....................aaACTTGCAGATTTTCGAAAAAGGTGAACGAAGAA : 3158477 246 : PheLysProIleIleThrIleGlnPheIleValSerMetLeuValValCysSerAs : 264 ||||||! !|||:!:! ! !|||||| !:!!||||||! !|||:!!|||! !|| PheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIleCysPheAs 3158478 : TTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTTCAA : 3158534 265 : nLeuTyrGlnLeuAlaLysValThrLeuAsnAlaGluSerLeuThrLeuMetLeuT : 283 |||||||!:!:!!.!!:!!:!!! !:!!:!:...::: ::: ::::!:|||| nLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIleIleLeuT 3158535 : TCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaatcaTACTCT : 3158591 284 : yrThrThrSerMetLeuThrGlnIleLeuIleTyrCysTrpPheGlyAsnGluVal : 301 ||:!! !!!!! :!!|||||||||!!! !|||||||||!:!|||||||||||| yrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGluVal 3158592 : ACTCTTTCTGCACTATCACGCAGATATTTTACTATTGTTGGTACGGCAACGAAGTG : 3158645 302 : LysIle{L} >>>> Target Intron 2 >>>> {ys}SerValGlnLeuAl : 309 ||| {:} 83 bp {!!}|||:!!|||||| ! Lys---{G}-+ --{lu}SerLeuGlnLeuPr 3158646 : AAA---{G}at.........................gt{AG}AGCCTCCAACTTCC : 3158749 310 : aAlaAsnIlePheGluIleGluTrpLeuLysLeuAspArgSerSerLysLysAspL : 328 ! !! ||||||.!.! !!!:||| !...|||:!!!.!!:! !! !:!! | oTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArgAlaL 3158750 : ATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGAGCAC : 3158806 329 : euLeuIleIleMetAsnArgSerLeuValProIleGluPheSerSerAlaTyrIle : 346 ||||||||!!:|||!..|||:!!:!! !||||||||||||!!!||| !:!!:!! euLeuIleMetMetArgArgAlaValArgProIleGluPheThrSerIleHisVal 3158807 : TTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCACGTT : 3158860 347 : IleThrMetAsnValAspSerPheValSerLeu : 357 :!!:!!:!!|||:!!!!:||||||:!!:!!:!! ValSerValAsnLeuGluSerPheMetAlaVal 3158861 : GTCTCTGTGAATCTCGAATCCTTCATGGCAGTC : 3158895 vulgar: CbirOr191 125 357 . KQ414646.1 3157794 3158895 + 336 M 43 129 G 0 3 M 54 162 G 1 0 M 11 33 5 0 2 I 0 321 3 0 2 M 68 204 G 1 0 S 0 1 5 0 2 I 0 79 3 0 2 S 1 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157795 3158895 336 + . gene_id 5 ; sequence CbirOr191 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3157795 3158121 . + . KQ414646.1 exonerate:protein2genome:local exon 3157795 3158121 . + . insertions 3 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3158122 3158123 . + . intron_id 1 ; splice_site "AT" KQ414646.1 exonerate:protein2genome:local intron 3158122 3158446 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3158445 3158446 . + . intron_id 0 ; splice_site "AA" KQ414646.1 exonerate:protein2genome:local cds 3158447 3158651 . + . KQ414646.1 exonerate:protein2genome:local exon 3158447 3158651 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3158652 3158653 . + . intron_id 2 ; splice_site "AT" KQ414646.1 exonerate:protein2genome:local intron 3158652 3158734 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3158733 3158734 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local cds 3158735 3158895 . + . KQ414646.1 exonerate:protein2genome:local exon 3158735 3158895 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157795 3158895 336 + . alignment_id 5 ; Query CbirOr191 ; Align 3157795 126 129 ; Align 3157927 169 162 ; Align 3158089 224 33 ; Align 3158447 235 204 ; Align 3158737 305 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr191 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 210 Query range: 129 -> 300 Target range: 3153129 -> 3153645 130 : TyrThrValLeuAlaGluValThrLeuMetTrpThrAlaLeuAlaSerPheLeuTh : 148 |||||| !!!! !!!::!! !:!!:!: ! !:!!.!!|||!:!!!!|| TyrThrTyrPheLeuAspIleLeuValValValLeuTrpIleThrSerTyrPheTh 3153130 : TACACATATTTCCTGGACATCTTGGTAGTCGTTTTATGGATAACATCGTACTTCAC : 3153184 149 : rAspPheArgSerGlyAsnLeuThrPheArgGluTrpThrProTyrAsn<->TyrS : 166 ||||!:!||| ...... |||||| ||| !||||||:!! !! rAspTyrArgArgArgLysPheLysPheArgValTrpLeuProTyrAspThrThrT 3153185 : GGACTACAGGcgcagaaaattcaaatttcgcgtCTGGTTACCTTACGACACTACTA : 3153241 167 : erGluThrMetPheCysValIleTyrValArgGlnLeuIleSerThrSerMetGly : 184 !!:!! !!:!:||| !:!!|||||| !!:!|||:!!:!!!!!|||!!! .!! hrGlnProValPheThrLeuIleTyrCysGlnGlnIleValCysThrTrpTyrSer 3153242 : CACAACCTGTCTTCACTCTGATCTACTGTCAACAGATCGTCTGCACGTGGTACAGC : 3153295 185 : AlaMetValAsnIleAlaCysAspSerMetIleCysGlyPheIleLeuHisValCy : 203 !.!! :!!|||:!! !||||||!!!:!!.!! !!|||.!.!!::!!!!.:!!|| ValAsnIleAsnValIleCysAspCysLeuPheSerGlyLeuMetIleGlnIleCy 3153296 : GTGAATATTAACGTCATTTGCGACTGCCTGTTCAGCGGCCTGATGATACAGATTTG : 3153352 204 : sCysGlnPheGluIleLeuGluCysArgLeuLysLysValAlaLeuAspGlnLysA : 222 |! !!...!! :!!:!! !! !! !::!!!. !!.!|||! ! ! !! sSerIleLeuArgLysMetLysProThrArgArgAsnCysValLeuValThrIleI 3153353 : CTCAATCTTACGGAAGATGAAACCTACTCGGCGAAACTGTGTGCTCGTCACCATAA : 3153409 223 : snLeuArgMetGlyAspCysValHisGlnHisAspCysIlePheLysPheAlaPhe : 240 ! ! !! .!!.!.! ! ...::: !! !!!.||| leArgTyrThrSerGlnSerArgGlnGluIleLysArgTyrVal***LeuAlaGln 3153410 : TCAGATATACAAGCCAGTCTCGacaagaaattaaacgatacgTTTGATTGGCGCAA : 3153463 241 : MetIleAsnGluHisPheLysProIleIleThrIleGlnPheIleValSerMetLe : 259 !!::!:|||||| ! .!! ! !:!! !:!||||||||| :!!|||! IleValAsnGluLysLeuGlyAsnValSerSerIleGlnPheAlaIleSerThrGl 3153464 : ATAGTGAACGAGAAGCTTGGAAATGTCTCGAGTATACAGTTCGCGATAAGCACAGG : 3153520 260 : uValValCysSerAsnLeuTyrGlnLeuAlaLysValThrLeuAsnAlaGluSerL : 278 !!.!:!!|||! !|||||||||!:!:!!:!! !:!! !|||..! !!:!!! !: yAlaIleCysPheAsnLeuTyrArgMetSerValIleGluLeuGlyProLysPheV 3153521 : AGCGATATGCTTCAATCTCTATCGAATGTCGGTGATAGAACTCGGTCCAAAGTTTG : 3153577 279 : euThrLeuMetLeuTyrThrThrSerMetLeuThrGlnIleLeuIleTyrCysTrp : 296 !! ! !:!: ! !|||..!!!!:!:|||.!!||||||!!! !||||||||| alGluAlaLeuThrIleThrValCysLeuLeuAlaGlnIlePheTyrTyrCysTrp 3153578 : TGGAAGCGTTAACTATCACAGTATGCTTACTCGCGCAGATATTTTACTATTGTTGG : 3153631 297 : PheGlyAsnGlu : 300 !::||||||::: TyrGlyAsnAsp 3153632 : TAcggtaacgat : 3153645 vulgar: CbirOr191 129 300 . KQ414646.1 3153129 3153645 + 210 M 35 105 G 0 3 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153130 3153645 210 + . gene_id 6 ; sequence CbirOr191 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153130 3153645 . + . KQ414646.1 exonerate:protein2genome:local exon 3153130 3153645 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153130 3153645 210 + . alignment_id 6 ; Query CbirOr191 ; Align 3153130 130 105 ; Align 3153238 165 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr191 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 149 -> 304 Target range: 3174342 -> 3175138 150 : PheArgSerGlyAsnLeuThrPheArgGluTrpThrProTyrAsnTyrSerGluTh : 168 !!.||||||! !!:!! ! !!|||..!!!: ! !|||!:!:!!|||!!!! || LeuArgSerGluSerTyrProPheGluAspGly***ProPheAspTyrArgAlaTh 3174343 : TTAAGATCAGAGAGTTACCCCTTCGAGGATGGTTAACCTTTCGATTATAGAGCCAC : 3174397 169 : rMet<-><->PheCysValIleTyrValArgGlnLeuIleSerThrSerMetGlyA : 185 |:!! ||| !!:!!! !|||!.! !|||!!!:!!!!! !! !.!. !. rLeuGlyIlePheSerLeuThrTyrAlaTyrGlnPheValThrLeuIlePheLeuT 3174398 : ATTGGGTATTTTCAGCCTTACCTACGCTTATCAGTTTGTAACTCTGATATTCCTTA : 3174454 186 : laMetValAsnIleAlaCysAspSerMetIleCysGlyPheIleLeuHisValCys : 203 !! !.!! !|||!.!! !|||!:!:!:.!! !!|||.!.:!::!!|||:!!! ! hrSerAlaIleIleGlySerAspAsnLeuPheSerGlyLeuLeuIleHisIleTyr 3174455 : CTTCTGCTATTATCGGTTCTGACAATCTATTCAGCGGACTGTTGATCCACATTTAT : 3174508 204 : CysGlnPheGluIleLeuGluCysArgLeuLysLysValAlaLeuAspGlnLysAs : 222 ||||||||||||||||||:!! !|||||||||!..:!! !! !||| !:!.! CysGlnPheGluIleLeuGlnHisArgLeuLysSerIleLysProAsp---ArgGl 3174509 : TGCCAATTCGAGATACTCCAACATCGTCTGAAGAGCATTAAACCTGAC---AGGGA : 3174562 223 : nLeuArgMetGlyAspCysValHisGlnHisAspCysIlePhe{Ly} >>>> Ta : 237 .! ! ! ! !.!.|||!.! !!!.||| !! !!|||!:!{||} uTyrSerAlaLysGlnCysAlaPheHisHisTyrArgIleTyr{Ly}++ 3174563 : GTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGCATATAC{AA}gt....... : 3174611 238 : rget Intron 1 >>>> {s}PheAlaPheMetIleAsnGluHisPheLysPro : 248 328 bp {|}|||||| !!:||||||! ! ! |||!.. ! ++{s}PheAlaGluIleIleAsnAlaLysPheSerIle 3174612 : ..................ag{A}TTCGCTGAAATTATAAACGCGAAGTTCAGCATC : 3174968 249 : IleIleThrIleGlnPheIleValSerMetLeuValValCysSerAsnLeuTyrGl : 267 ! !!:.!!! ||||||:!:|||!!!! :!!..!:!!|||! !||||||!:!!: ThrMetAlaThrGlnPheLeuValThrThrMetThrMetCysPheAsnLeuPheAr 3174969 : ACGATGGCCACGCAATTTCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCG : 3175025 268 : nLeuAlaLysValThrLeuAsnAlaGluSerLeuThrLeuMetLeuTyrThrThrS : 286 !|||.!!:!!..!! !:!! !!:!!:!! !|||.!!|||!!:! !!:!! !..!| gLeuThrGlnThrLysValTyrSerGlnValLeuAlaLeuIleProPheMetValS 3175026 : ACTGACACAGACCAAGGTGTATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCA : 3175082 287 : erMetLeuThrGlnIleLeuIleTyrCysTrpPheGlyAsnGluValLysIleLys : 304 ||:!!!!!.!!||||||!!! !! !||||||!:!|||||||||..!|||:!:||| erValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys 3175083 : GTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG : 3175136 vulgar: CbirOr191 149 304 . KQ414646.1 3174342 3175138 + 204 M 20 60 G 0 6 M 50 150 G 1 0 M 16 48 S 0 2 5 0 2 I 0 324 3 0 2 S 1 1 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174343 3175138 204 + . gene_id 7 ; sequence CbirOr191 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3174343 3174608 . + . KQ414646.1 exonerate:protein2genome:local exon 3174343 3174608 . + . insertions 6 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3174609 3174610 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3174609 3174936 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3174935 3174936 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3174937 3175138 . + . KQ414646.1 exonerate:protein2genome:local exon 3174937 3175138 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3174343 3175138 204 + . alignment_id 7 ; Query CbirOr191 ; Align 3174343 150 60 ; Align 3174409 170 150 ; Align 3174559 221 48 ; Align 3174938 238 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr191 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 302 -> 357 Target range: 3150863 -> 3151028 303 : IleLysSerValGlnLeuAlaAlaAsnIlePheGluIleGluTrpLeuLysLeuAs : 321 |||:!!||||||:!!:!!!.! !!..|||||||||!!:!!:|||:!! |||.! IleGlnSerValGluIleValArgThrIlePheGluMetAspTrpIleProLeuGl 3150864 : ATTCAGAGCGTCGAGATTGTGCGCACGATCTTCGAAATGGATTGGATACCTCTCCA : 3150918 322 : pArgSerSerLysLysAspLeuLeuIleIleMetAsnArgSerLeuValProIleG : 340 .!.!.!!! !||||||||||||:!!:!!:!: !!..|||:!!:!!:!!||||||| nAsnGlyIleLysLysAspLeuIleValValAlaArgArgAlaMetIleProIleG 3150919 : GAACGGTATCAAGAAGGATTTGATAGTCGTGGCGAGAAGAGCGATGATCCCGATCG : 3150975 341 : luPheSerSerAlaTyrIleIleThrMetAsnValAspSerPheValSerLeu : 357 ||!!.!!!!!!||||||!!:.!!||||||:!!:!!:!!!!!|||||||||:!! luLeuThrCysAlaTyrMetPheThrMetAspLeuAsnThrPheValSerVal 3150976 : AGTTGACCTGCGCGTACATGTTCACCATGGACTTGAACACCTTCGTCAGCGTC : 3151028 vulgar: CbirOr191 302 357 . KQ414646.1 3150863 3151028 + 143 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150864 3151028 143 + . gene_id 8 ; sequence CbirOr191 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150864 3151028 . + . KQ414646.1 exonerate:protein2genome:local exon 3150864 3151028 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150864 3151028 143 + . alignment_id 8 ; Query CbirOr191 ; Align 3150864 303 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr191 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 234 -> 304 Target range: 3178378 -> 3178591 235 : IlePheLysPheAlaPheMetIleAsnGluHisPheLysProIleIleThrIleGl : 253 ||| :::|||.!! ! !:!:||| |||:!! !!!:||| !:!:|| IleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLeuGl 3178379 : atttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCTGCA : 3178433 254 : nPheIleValSerMetLeuValValCysSerAsnLeuTyrGlnLeuAlaLysValT : 272 |||| !:!!||| ! !|||:!!|||! !!:!:!!|||:!!:!!:!!! !:!!! nPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrIleA 3178434 : ATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGATTA : 3178490 273 : hr<->LeuAsnAlaGluSerLeuThrLeuMetLeuTyrThrThrSerMetLeuThr : 289 .! !!!!:! !.!.! !:!! !! ! ! !||| ! !!!!||||||||| snProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeuThr 3178491 : ATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACG : 3178544 290 : GlnIleLeuIleTyrCysTrpPheGlyAsnGluValLysIleLys : 304 |||:!:! !:!!||||||||||||||||||||||||! !:!:||| GlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys 3178545 : CAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: CbirOr191 234 304 . KQ414646.1 3178378 3178591 + 124 M 38 114 G 0 3 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178379 3178591 124 + . gene_id 9 ; sequence CbirOr191 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178379 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178379 3178591 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178379 3178591 124 + . alignment_id 9 ; Query CbirOr191 ; Align 3178379 235 114 ; Align 3178496 273 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr191 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 303 -> 361 Target range: 3178743 -> 3178917 304 : LysSerValGlnLeuAlaAlaAsnIlePheGluIleGluTrpLeuLysLeuAspAr : 322 :!!|||! !:!!:!!!.!! ! !|||!:!|||!!:!!:||| ! !||| !! GlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuProTh 3178744 : CAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCCCAC : 3178798 323 : gSerSerLysLysAspLeuLeuIleIleMetAsnArgSerLeuValProIleGluP : 341 !..!! !!:!||||||||||||:!:|||||| |||||| ! !|||:!!:!!. rAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValLysM 3178799 : CGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTAAAA : 3178855 342 : heSerSerAlaTyrIleIleThrMetAsnValAspSerPheValSerLeuLeuLys : 359 !.!!!|||!.!:!!:!!:!!..!:!:::!!.!!!:||||||:!!|||:!! !!:! etThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerValSerArg 3178856 : TGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTTAGTAGA : 3178909 360 : ThrSer : 361 ! !||| IleSer 3178910 : ATTTCC : 3178917 vulgar: CbirOr191 303 361 . KQ414646.1 3178743 3178917 + 108 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178744 3178917 108 + . gene_id 10 ; sequence CbirOr191 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178744 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178744 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178744 3178917 108 + . alignment_id 10 ; Query CbirOr191 ; Align 3178744 304 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr200CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 538 Query range: 0 -> 303 Target range: 3163849 -> 3165193 1 : MetAsnValLeuLysPheThrLeuIleIleCysGlyPheAlaGlyCysTrpGlnPr : 19 |||!:!|||||||||! !|||! !:!!:!: ! !.!!:!!||||||!::! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 3163850 : ATGAGTGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTACCTGCC : 3163904 20 : oLeuSerTrpThrSerLeuSerLysAsnIleMetTyrLysAlaTyrAlaThrPheL : 38 |! !|||||||||!!!! !! !:!!!.. !:!!|||!!. !|||!.!..!|||! oHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheT 3163905 : CCATTCGTGGACAACGCCGTTCGAAAGGTCTTTGTACAATATCTACGGGGTGTTCT : 3163961 39 : euIleSerSerLeuTyrIlePheLeuIleSerGlnPheIleHisValAlaLeuAsn : 56 !:!: ! !||| !! !.!! !:!!||||||.!.:!! !!||||||:!!||| yrLeuLeuLeuLeuSerSerLeuAlaLeuSerGlnIleLeuAspValAlaIleAsn 3163962 : ACTTGCTTCTTCTAAGCAGCCTCGCCCTCTCGCAAATATTAGACGTAGCGATCAAC : 3164015 57 : ValGlyAsnSerAspGluPheThrAspAlaLeuTyrMetMetLeuThrIleLeuVa : 75 |||! !!:!..!|||!!:|||:::||| ... ::: !..!:!:!!!:! ValGluSerGlnAspAspPheSerAspAsnPheSerIleThrAlaValValPheLe 3164016 : GTGGAGAGCCAGGATGACTTCagtgacaatttttctatcaccGCTGTGGTGTTTCT : 3164072 76 : lAlaGlyTyrLysGlnValTyrMetTrpIleAspArgLysAsnPheMetIleIleI : 94 !.!! !!!:!|||! ! !:!: ||| ||| !||||||!!:.!!:!:| uThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuI 3164073 : CACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGA : 3164129 95 : leAsnValLeuThrGluGluProPheAlaProCysGluSerHisGluLeuMetIle : 112 ||:!!..!||| !.!.:!!||||||:!!||| !!:!!!.!.||| ! !||| leAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIle 3164130 : TCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATT : 3164183 113 : GlnGluLysPheGluLysIleAla{Gl} >>>> Target Intron 1 >>>> : 121 ::!! !|||||||||||||||.!!{:!} 107 bp ArgAlaLysPheGluLysIleThr{Gl}++ + 3164184 : AGAGCGAAATTCGAGAAGATCACC{GA}gt.........................a : 3164317 122 : {n}ThrAsnThrLeuArgTyrLeuIleLeuValLeuMetSerIleSerSerIleI : 139 {!} !||||||:!! !!|||! !! !|||:!!|||!!:!!! ! !!!!||| +{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleCysAlaPheTrpIleT 3164318 : g{A}TGGAACACGATTGGCTACTGGAGTTTACTATTAATTTGTGCGTTCTGGATAT : 3164371 140 : leLeuThrSerValPheThrValLeuThrAsnHisAsnLeuThrTyrAsnThrTrp : 157 !:!!! !|||:!!!!.|||! !!!!!:!!:!...!!.|||! !!:!....!!||| yrValArgSerLeuLeuThrAspPheSerSerArgLysLeuMetPheArgAlaTrp 3164372 : ACGTGAGATCGCTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGCATGG : 3164425 158 : IleProPheAsnTyrSerProProAlaValPhePheLeuValTyrThrHisGlnLe : 176 :!!|||!:!:!!||||||||| !! !!:!!|||.!!|||..!!:!..!|||||| LeuProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAl 3164426 : TTACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGC : 3164482 177 : uIleAlaMetSerThrSerGlyValValAsnValAlaCysAspSerLeuLeuCysG : 195 !|||||| !!!!! !!!! !!..! !!:!|||.!! |||||||||! ! !| aIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrG 3164483 : TATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTG : 3164539 196 : lyPheLeuLeuTyrIleCysCysGlnLeuGluIleLeuArgTyrArgLeuSerLys : 213 ||!!.|||:!! !!|||! !||||||!!!|||||||||..!:!!||||||!!!!!. lyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsn 3164540 : GCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAAC : 3164593 214 : IleIleHisGlyGln<->AspIleLeuHisAspCysValTyrHisHisAsnArgIl : 231 :!!! ! !! !||| ||| !:!! ! .!.|||!.! ! ||||||:!!||||| ValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIl 3164594 : GTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTAT : 3164650 232 : ePhe{Gl} >>>> Target Intron 2 >>>> {u}TyrAlaTyrIleValA : 239 |!:!{:!} 325 bp {!}!:!:!! ! ! |||| eTyr{Gl}++ ++{n}PheSerLysLysValA 3164651 : ATAC{CA}gt.........................ag{A}TTTTCGAAAAAGGTGA : 3164999 240 : snLysLysPheAlaValIleIleThrIleGlnPheAlaValSerMetLeuValVal : 257 ||:!!:!!||| !:!!|||:!:! ! !||||||..!:!!||||||! !|||:!! snGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIle 3165000 : ACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATC : 3165053 258 : CysSerAsnLeuTyrArgIleAlaMetAlaAlaAsnTyrMetSerTyrIleProLe : 276 |||! !||||||||||||!!:.!!..! ! !! ! ...:::::: :: CysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIl 3165054 : TGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaat : 3165110 277 : uValValTyrThrSerAlaIleLeuMetGlnIlePheIleTyrCysTrpPheGlyA : 295 ::!!:!!|||:!!! !..!! !:!!! !||||||||| !|||||||||!:!|||| eIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyA 3165111 : caTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGGCA : 3165167 296 : snGluValLysLeuLysSerLeuHis : 303 |||||||||||! !||| ! !||| snGluValLysHisLysValAspHis 3165168 : ACGAAGTGAAACATAAGGTTGATCAT : 3165193 vulgar: CbirOr200CTE 0 303 . KQ414646.1 3163849 3165193 + 538 M 120 360 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 97 291 G 0 3 M 14 42 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3163850 3165193 538 + . gene_id 1 ; sequence CbirOr200CTE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3163850 3164211 . + . KQ414646.1 exonerate:protein2genome:local exon 3163850 3164211 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164212 3164213 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164212 3164318 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3164317 3164318 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164319 3164657 . + . KQ414646.1 exonerate:protein2genome:local exon 3164319 3164657 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164658 3164659 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164658 3164982 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3164981 3164982 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164983 3165193 . + . KQ414646.1 exonerate:protein2genome:local exon 3164983 3165193 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3163850 3165193 538 + . alignment_id 1 ; Query CbirOr200CTE ; Align 3163850 1 360 ; Align 3164320 122 291 ; Align 3164614 219 42 ; Align 3164984 234 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr200CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 534 Query range: 0 -> 303 Target range: 3157321 -> 3158665 1 : MetAsnValLeuLysPheThrLeuIleIleCysGlyPheAlaGlyCysTrpGlnPr : 19 |||!:!|||||||||! !|||! !:!!:!: ! !.!!:!!||||||!::! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 3157322 : ATGAGCGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTATCTGCC : 3157376 20 : oLeuSerTrpThrSerLeuSerLysAsnIleMetTyrLysAlaTyrAlaThrPheL : 38 |! !|||||||||!!!! !! !:!!!.. !:!!|||!!. !|||!.!...||| oHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheS 3157377 : CCATTCGTGGACAACACCGTTCGAAAGGTCTTTGTACAATATCTACGGGGtgttct : 3157433 39 : euIleSerSerLeuTyrIlePheLeuIleSerGlnPheIleHisValAlaLeuAsn : 56 ... ||| !! !.!!:!!:!!||||||.!.:!! !!||||||:!!||| erPheLeuLeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIleAsn 3157434 : cctttcttcttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCAAC : 3157487 57 : ValGlyAsnSerAspGluPheThrAspAlaLeuTyrMetMetLeuThrIleLeuVa : 75 |||! !!:!..!|||!!:|||!::||| ... ::: !..!:!:!!!:! ValGluSerGlnAspAspPheSerAspAsnPheSerValThrAlaValValPheLe 3157488 : GTGGAGAGCCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTTCT : 3157544 76 : lAlaGlyTyrLysGlnValTyrMetTrpIleAspArgLysAsnPheMetIleIleI : 94 !.!! !!!:!|||! ! !:!: ||| ||| !||||||!!:.!!:!:| uThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuI 3157545 : CACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGA : 3157601 95 : leAsnValLeuThrGluGluProPheAlaProCysGluSerHisGluLeuMetIle : 112 ||:!!..!||| !.!.:!!||||||:!!||| !!:!!!.!.||| ! !||| leAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIle 3157602 : TCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATT : 3157655 113 : GlnGluLysPheGluLysIleAla{Gl} >>>> Target Intron 1 >>>> : 121 ::!! !|||||||||||||||.!!{:!} 107 bp ArgAlaLysPheGluLysIleThr{Gl}++ + 3157656 : AGAGCGAAATTCGAGAAGATCACC{GA}gt.........................a : 3157789 122 : {n}ThrAsnThrLeuArgTyrLeuIleLeuValLeuMetSerIleSerSerIleI : 139 {!} !||||||:!! !!|||! !! |||:::|||:::||| ! !! !||| +{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleT 3157790 : g{A}TGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATAT : 3157843 140 : leLeuThrSerValPheThrValLeuThrAsnHisAsnLeuThrTyrAsnThrTrp : 157 !:!!! !|||:!!!!.! !! !!!!!:!|||...!!.|||! !!:!....!!||| yrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrp 3157844 : ACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGG : 3157897 158 : IleProPheAsnTyrSerProProAlaValPhePheLeuValTyrThrHisGlnLe : 176 ||||||!:!:!!||||||||| !! !!:!!|||.!!|||..!! !..!|||||| IleProTyrAspTyrSerProAlaProIlePheIleLeuThrSerValHisGlnAl 3157898 : ATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTCCGTCCATCAAGC : 3157954 177 : uIleAlaMetSerThrSerGlyValValAsnValAlaCysAspSerLeuLeuCysG : 195 !|||||| !!!!! !!!! !!..! !!.!|||.!! |||!!!|||! ! !| aIleAlaSerThrIleCysCysThrSerThrValThrValAspThrLeuTyrThrG 3157955 : TATAGCCTCGACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTATACACTG : 3158011 196 : lyPheLeuLeuTyrIleCysCysGlnLeuGluIleLeuArgTyrArgLeuSerLys : 213 ||!!.|||:!! !!|||! !||||||!!!|||||||||..!:!!||||||!!!!!. lyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsn 3158012 : GCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAAC : 3158065 214 : IleIleHisGlyGln<->AspIleLeuHisAspCysValTyrHisHisAsnArgIl : 231 :!!! ! !! !||| ||| !:!! ! .!.|||!.! ! ||||||:!!||||| ValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIl 3158066 : GTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTAT : 3158122 232 : ePhe{Gl} >>>> Target Intron 2 >>>> {u}TyrAlaTyrIleValA : 239 |!:!{:!} 325 bp {!}!:!:!! ! ! |||| eTyr{Gl}++ ++{n}PheSerLysLysValA 3158123 : ATAC{CA}gt.........................ag{A}TTTTCGAAAAAGGTGA : 3158471 240 : snLysLysPheAlaValIleIleThrIleGlnPheAlaValSerMetLeuValVal : 257 ||:!!:!!||| !:!!|||:!:! ! !||||||..!:!!||||||! !|||:!! snGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIle 3158472 : ACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATC : 3158525 258 : CysSerAsnLeuTyrArgIleAlaMetAlaAlaAsnTyrMetSerTyrIleProLe : 276 |||! !||||||||||||!!:.!!..! ! !! ! ...:::::: :: CysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIl 3158526 : TGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaat : 3158582 277 : uValValTyrThrSerAlaIleLeuMetGlnIlePheIleTyrCysTrpPheGlyA : 295 ::!!:!!|||:!!! !..!! !:!!! !||||||||| !|||||||||!:!|||| eIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyA 3158583 : caTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGTTGGTACGGCA : 3158639 296 : snGluValLysLeuLysSerLeuHis : 303 ||||||||||| !||| ! !||| snGluValLysAspLysValAspHis 3158640 : ACGAAGTGAAAGATAAGGTTGATCAT : 3158665 vulgar: CbirOr200CTE 0 303 . KQ414646.1 3157321 3158665 + 534 M 120 360 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 97 291 G 0 3 M 14 42 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157322 3158665 534 + . gene_id 2 ; sequence CbirOr200CTE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3157322 3157683 . + . KQ414646.1 exonerate:protein2genome:local exon 3157322 3157683 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3157684 3157685 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3157684 3157790 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3157789 3157790 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3157791 3158129 . + . KQ414646.1 exonerate:protein2genome:local exon 3157791 3158129 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158130 3158131 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158130 3158454 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3158453 3158454 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158455 3158665 . + . KQ414646.1 exonerate:protein2genome:local exon 3158455 3158665 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157322 3158665 534 + . alignment_id 2 ; Query CbirOr200CTE ; Align 3157322 1 360 ; Align 3157792 122 291 ; Align 3158086 219 42 ; Align 3158456 234 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr200CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 399 Query range: 151 -> 362 Target range: 3155490 -> 3156271 152 : LeuThrTyrAsnThrTrpIleProPheAsnTyrSerProProAlaValPhePheLe : 170 ||| !!|||...! !|||:!!|||! !||||||!!!||| ! !..!!:!! !! LeuProTyrArgIleTrpLeuProCysAsnTyrThrProLeuIleThrTyrCysSe 3155491 : TTACCGTATCGAATTTGGCTACCTTGCAATTACACCCCGTTAATTACTTACTGTTC : 3155545 171 : uValTyrThrHisGlnLeuIleAlaMetSerThrSerGlyValValAsnValAlaC : 189 !:!!||||||! !|||! !:!:|||:!::!! !|||!.!:!!:!!:!!||||||| rIleTyrThrLeuGlnCysValAlaLeuAlaLeuSerAlaMetMetHisValAlaC 3155546 : GATTTACACTCTCCAATGTGTGGCACTCGCTCTAAGCGCTATGATGCACGTCGCCT : 3155602 190 : ysAspSerLeuLeuCysGlyPheLeuLeuTyrIleCysCysGlnLeuGluIleLeu : 207 |||||||||||:!!||||||.!.||||||:!!! !! ! !!|||:!!||||||||| ysAspSerLeuIleCysGlyLeuLeuLeuHisThrTyrGlyGlnIleGluIleLeu 3155603 : GCGACAGTTTGATCTGCGGCCTGCTGTTACACACTTACGGCCAGATCGAGATCCTC : 3155656 208 : ArgTyrArgLeuSerLysIleIleHisGlyGlnAspIleLeuHisAsp<->CysVa : 225 !!! !||||||!.. ||| ......:::...! ! ! ! ||||| GlyCysArgLeuLysThrIleLysGluAsnGluSerLysThrSerLysLeuCysVa 3155657 : GGTTGTCGTCTGAaaacgataaaagaaaacgagagtAAGACGTCCAAGTTGTGCGT : 3155713 226 : lTyrHisHisAsnArgIlePhe{Gl} >>>> Target Intron 1 >>>> { : 233 | !:!!:!!|||! !|||!:!{..} 69 bp { lArgTyrAsnAsnLeuIleTyr{Ar}++ ++{ 3155714 : TCGTTACAACAACCTTATCTAT{CG}gt.........................ag{ : 3155808 234 : u}TyrAlaTyrIleValAsnLysLysPheAlaValIleIleThrIleGlnPheAla : 251 !}!:!.!! !!!::!!|||:!!:!!|||! !:!! ||| !! !||||||||| g}PheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAla 3155809 : A}TTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCG : 3155860 252 : ValSerMetLeuValValCysSerAsnLeuTyrArgIleAlaMetAla<->AlaAs : 269 ||||||! !|||!.!:!!|||! !|||||||||! !:!!.!! :!! !.!!. ValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValTh 3155861 : GTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGAC : 3155917 270 : nTyrMetSerTyrIleProLeuValValTyrThrSerAlaIleLeuMetGlnIleP : 288 . !!:!!!|||:!: !:!!:!!:!!|||!:!|||..!!!:|||! !||||||| rProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIleP 3155918 : GCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATAT : 3155974 289 : heIleTyrCysTrpPheGlyAsnGluValLysLeuLys >>>> Target Intr : 301 ||||||||||||||!:!||||||||||||||||||||| 73 bp heIleTyrCysTrpTyrGlyAsnGluValLysLeuLys++ 3155975 : TCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAGgt................ : 3156015 302 : on 2 >>>> SerLeuHisLeuMetAsnAsnIleTyrAsnMetGluTrpThrThr : 315 ||||||.!.:!! |||! |||!:!:!!:!:!!:|||||| !! ++SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrPro 3156016 : .........agAGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCG : 3156128 316 : LeuAsnSerSerSerLysLysAlaLeuLeuPheIleMetLysArgAlaMetValPr : 334 !!!:!!!.!:!!!!!|||::! !:!!||| !!!:|||! !|||||| ! !|| PheAspLysAlaThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerPr 3156129 : TTCGATAAAGCTACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCC : 3156185 335 : oIleGluPheHisSerSerTyrIleIleThrMetAsnLeuAspSerPheValAlaV : 353 |||||||.!! !||| ! !:!::!!:!!:!!|||||||||||||||||||||| oIleGluIleIleSerValArgValLeuSerValAsnLeuAspSerPheValAlaV 3156186 : AATTGAAATCATCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTG : 3156242 354 : alLeuLysMetSerTyrSerValPheAsn : 362 || !! ...|||... ||| alSerIleAspLysTyrGlnLysThrAsn 3156243 : TCAGTATtgataaatatcaaaaaactaat : 3156271 vulgar: CbirOr200CTE 151 362 . KQ414646.1 3155490 3156271 + 399 M 72 216 G 0 3 M 9 27 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 34 102 G 0 3 M 33 99 5 0 2 I 0 69 3 0 2 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155491 3156271 399 + . gene_id 3 ; sequence CbirOr200CTE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3155491 3155738 . + . KQ414646.1 exonerate:protein2genome:local exon 3155491 3155738 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3155739 3155740 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3155739 3155807 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3155806 3155807 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3155808 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155808 3156012 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156013 3156014 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156013 3156085 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3156084 3156085 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156086 3156271 . + . KQ414646.1 exonerate:protein2genome:local exon 3156086 3156271 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155491 3156271 399 + . alignment_id 3 ; Query CbirOr200CTE ; Align 3155491 152 216 ; Align 3155710 224 27 ; Align 3155809 234 102 ; Align 3155914 268 99 ; Align 3156086 301 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr200CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 318 Query range: 0 -> 296 Target range: 3152421 -> 3153645 1 : MetAsnValLeuLysPheThrLeuIleIleCysGlyPheAlaGlyCysTrpGlnPr : 19 |||:!!..!|||!..!::|||!!!! :!! ! ! !||| ! ! !|| MetAspThrLeuSerTrpThrPheLysLeuLeuThrValAsnGlyIleLeuAlaPr 3152422 : aTGGATACTCTAAGCTGGACGTTCAAGCTTCTGACGGTGAACGGTATTCTGGCACC : 3152476 20 : oLeuSerTrpThrSerLeuSerLysAsnIleMetTyrLysAlaTyrAlaThrPheL : 38 |! !:!!!::! !|||! !!!!:!!!..|||:!!||| ! !||| ! !|||: oSerAlaPheMetSerGlnTrpGlnThrIleLeuTyrGlyMetTyrMetPhePheM 3152477 : GTCCGCTTTCATGTCTCAGTGGCAGACGATTTTGTACGGGATGTACATGTTCTTCA : 3152533 39 : euIleSerSerLeuTyrIlePheLeuIleSerGlnPheIleHisValAlaLeuAsn : 56 !!:!:|||! !|||||| .!. ! !!!!! !.!!:!: !:!! !!!!||| etValSerMetLeuTyrAlaMetGluCysCysLeuIleLeuGlyMetIlePheAsn 3152534 : TGGTGTCGATGCTCTACGCGATGGAGTGCTGCCTGATCTTGGGCATGATATTCAAC : 3152587 57 : ValGlyAsnSerAspGluPheThrAspAlaLeuTyrMetMetLeuThrIleLeuVa : 75 |||! !!:!..!!!:!!:|||!:!!!: !||||||!!:! !|||! !:!::!! ValAspSerGlnGluAspPheSerGluAsnLeuTyrIleThrLeuIleLeuMetCy 3152588 : GTGGACAGTCAGGAGGATTTCAGCGAGAATCTGTATATCACGTTGATACTGATGTG : 3152644 76 : lAlaGlyTyrLysGlnValTyrMetTrpIleAspArgLysAsnPheMetIleIleI : 94 !::! !!! !||| ! :!! ! !..! !|||....!!! :!!!!:: sSerCysCysLysIleTyrMetLeuValThrSerAlaLysGlyIleLysValMetV 3152645 : CAGCTGTTGCAAAATCTACATGCTGGTCACTTCTGCGAAGGGGATCAAAGTTATGG : 3152701 95 : leAsnValLeuThrGluGluProPheAlaProCysGluSerHisGluLeuMetIle : 112 !::!!|||||| !||||||||||||!.!||| .!.!!!.!.||| ! !||| alAspValLeuArgGluGluProPheValProMetAsnArgGluGluAsnGluIle 3152702 : TGGACGTCCTTCGAGAGGAGCCTTTCGTGCCTATGAACAGAGAAGAGAACGAGATT : 3152755 113 : GlnGluLysPheGluLysIleAlaGlnThr{As} >>>> Target Intron 1 : 123 ::!! !!:!||||||:!!! ! !:!!!:!{||} 330 bp ArgValArgPheGluGluLysIleGluSer{As}++ 3152756 : AGAGTGAGATTCGAGGAGAAAATCGAGAGT{AA}gt.................... : 3152792 124 : >>>> {n}ThrLeuArgTyrLeuIleLeuValLeuMetSerIleSerSerIleI : 139 {|}.!! ! !||| ! !!!!:!! !!!:! !:!! ! !:!! +-{n}AlaLysAlaTyrThrTyrPheLeuAspIleLeuValValValLeuT 3152793 : .....aa{C}GCTAAGGCTTACACATATTTCCTGGACATCTTGGTAGTCGTTTTAT : 3153166 140 : leLeuThrSerValPheThrValLeuThrAsnHisAsnLeuThrTyrAsnThrTrp : 157 :!!|||||| !||||||! !! !! !............ :::.....!||| rpIleThrSerTyrPheThrAspTyrArgArgArgLysPheLysPheArgValTrp 3153167 : GGATAACATCGTACTTCACGGACTACAGGcgcagaaaattcaaatttcgcgtCTGG : 3153220 158 : IleProPheAsnTyrSerProProAlaValPhePheLeuValTyrThrHisGlnLe : 176 :!!|||!:!:!! !!!! !!! ! !!|||||| !|||:!!||| !!!.|||:! LeuProTyrAspThrThrThrGlnProValPheThrLeuIleTyrCysGlnGlnIl 3153221 : TTACCTTACGACACTACTACACAACCTGTCTTCACTCTGATCTACTGTCAACAGAT : 3153277 177 : uIleAlaMetSerThrSerGlyValValAsnValAlaCysAspSerLeuLeuCysG : 195 !:!!..!! !!!! !|||! ! !:!!|||||| !||||||!!!|||!!! !!| eValCysThrTrpTyrSerValAsnIleAsnValIleCysAspCysLeuPheSerG 3153278 : CGTCTGCACGTGGTACAGCGTGAATATTAACGTCATTTGCGACTGCCTGTTCAGCG : 3153334 196 : lyPheLeuLeuTyrIleCysCysGlnLeuGluIleLeuArgTyrArgLeuSerLys : 213 ||.!.:!!:!! ! ||||||! |||..!! :!!!:! !! !! ! !!!!. lyLeuMetIleGlnIleCysSerIleLeuArgLysMetLysProThrArgArgAsn 3153335 : GCCTGATGATACAGATTTGCTCAATCTTACGGAAGATGAAACCTACTCGGCGAAAC : 3153388 214 : IleIleHisGlyGlnAspIleLeuHisAspCysValTyrHisHis<-><->AsnAr : 230 !:!:! !! ! ||| !:!! !! !! !!..... ...|| CysValLeuValThrIleIleArgTyrThrSerGlnSerArgGlnGluIleLysAr 3153389 : TGTGTGCTCGTCACCATAATCAGATATACAAGCCAGTCTCGacaagaaattaaacg : 3153445 231 : gIlePheGluTyrAlaTyrIleValAsnLysLysPheAlaValIleIleThrIleG : 249 | !! !! ||| ! |||||||||:!!|||.!!!.! !:!! !:!|||| gTyrVal***LeuAlaGlnIleValAsnGluLysLeuGlyAsnValSerSerIleG 3153446 : atacgTTTGATTGGCGCAAATAGTGAACGAGAAGCTTGGAAATGTCTCGAGTATAC : 3153502 250 : lnPheAlaValSerMetLeuValValCysSerAsnLeuTyrArgIleAlaMetAla : 267 ||||||||:!!|||! !!.!:!!|||! !||||||||||||!!::!!:!! ! lnPheAlaIleSerThrGlyAlaIleCysPheAsnLeuTyrArgMetSerValIle 3153503 : AGTTCGCGATAAGCACAGGAGCGATATGCTTCAATCTCTATCGAATGTCGGTGATA : 3153556 268 : AlaAsnTyrMetSerTyrIleProLeuValValTyrThrSerAlaIleLeuMetGl : 286 ! ! ! ! !.!!:!:!: ! !:!!..! !||| !..!:!!||| !|| GluLeuGlyProLysPheValGluAlaLeuThrIleThrValCysLeuLeuAlaGl 3153557 : GAACTCGGTCCAAAGTTTGTGGAAGCGTTAACTATCACAGTATGCTTACTCGCGCA : 3153613 287 : nIlePheIleTyrCysTrpPheGlyAsnGlu : 296 ||||||| !|||||||||!::||||||::: nIlePheTyrTyrCysTrpTyrGlyAsnAsp 3153614 : GATATTTTACTATTGTTGGTAcggtaacgat : 3153645 vulgar: CbirOr200CTE 0 296 . KQ414646.1 3152421 3153645 + 318 M 122 366 S 0 2 5 0 2 I 0 326 3 0 2 S 1 1 M 105 315 G 0 6 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3152422 3153645 318 + . gene_id 4 ; sequence CbirOr200CTE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3152422 3152789 . + . KQ414646.1 exonerate:protein2genome:local exon 3152422 3152789 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3152790 3152791 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3152790 3153119 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3153118 3153119 . + . intron_id 0 ; splice_site "AA" KQ414646.1 exonerate:protein2genome:local cds 3153120 3153645 . + . KQ414646.1 exonerate:protein2genome:local exon 3153120 3153645 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3152422 3153645 318 + . alignment_id 4 ; Query CbirOr200CTE ; Align 3152422 1 366 ; Align 3153121 124 315 ; Align 3153442 229 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr200CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 255 Query range: 232 -> 362 Target range: 3150601 -> 3151134 233 : GluTyrAlaTyrIleValAsnLysLysPheAlaValIleIleThrIleGlnPheAl : 251 ..!|||!.!!:!! :!!.!.:!!|||||| ! !|||||| !:!:|||.!! ArgTyrValPheThrMetGlnGluLysPheArgTrpIleIleGlyValGlnLeuLe 3150602 : AGGTACGTTTTCACGATGCAAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTT : 3150656 252 : aValSerMetLeuValValCysSerAsnLeuTyrArgIleAlaMetAlaAlaAsnT : 270 ! !|||! !||||||||||||! !! !||||||..!:!:|||! .!! !! uSerSerThrLeuValValCysPheIleLeuTyrGluLeuAlaAsnThrProProI 3150657 : ATCGAGCACGCTGGTAGTGTGTTTCATCCTGTACGAATTGGCGAACACGCCTCCAA : 3150713 271 : yrMetSer<->TyrIleProLeuValValTyrThrSerAlaIleLeuMetGlnIle : 287 !! ||| |||:!:! !!!!|||:!!||| !:!!..!!!::!!! !|||||| leSerSerLysTyrLeuGlnPheValLeuTyrLeuAlaCysMetMetThrGlnIle 3150714 : TCAGCTCCAAGTACCTGCAATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATC : 3150767 288 : PheIleTyrCysTrpPheGlyAsnGluValLysLeuLys >>>> Target Int : 301 |||.!!|||||||||!:!|||.!.:!!:!!||||||||| 61 bp PhePheTyrCysTrpTyrGlyGluGlnLeuLysLeuLys++ 3150768 : TTCTTTTACTGCTGGTACGGCGAGCAGTTGAAACTGAAGgt............... : 3150811 302 : ron 1 >>>> SerLeuHisLeuMetAsnAsnIleTyrAsnMetGluTrpThrTh : 315 |||:!!.!.:!!:!!..!!..|||!:!.!.|||!!:|||! ! ! ++SerValGluIleValArgThrIlePheGluMetAspTrpIlePr 3150812 : ..........agAGCGTCGAGATTGTGCGCACGATCTTCGAAATGGATTGGATACC : 3150912 316 : rLeuAsnSerSerSerLysLysAlaLeuLeuPheIleMetLysArgAlaMetValP : 334 !|||.!.!:!.!!! !||||||! !|||:!! !!:!: !!:!|||||||||:!!| oLeuGlnAsnGlyIleLysLysAspLeuIleValValAlaArgArgAlaMetIleP 3150913 : TCTCCAGAACGGTATCAAGAAGGATTTGATAGTCGTGGCGAGAAGAGCGATGATCC : 3150969 335 : roIleGluPheHisSerSerTyrIleIleThrMetAsnLeuAspSerPheValAla : 352 ||||||||!!. !!!!:!!|||!!:.!!||||||:!!|||:!!!!!||||||::! roIleGluLeuThrCysAlaTyrMetPheThrMetAspLeuAsnThrPheValSer 3150970 : CGATCGAGTTGACCTGCGCGTACATGTTCACCATGGACTTGAACACCTTCGTCAGC : 3151023 353 : >>>> Target Intron 2 >>>> ValLeuLysMetSerTyrSerValPhe : 361 79 bp :!!||||||||||||||||||..!!:! ++ ++LeuLeuLysMetSerTyrSerThrTyr 3151024 : gt.........................agCTGTTGAAAATGTCCTACTCGACGTAC : 3151129 362 : Asn : 362 ||| Asn 3151130 : AAT : 3151134 vulgar: CbirOr200CTE 232 362 . KQ414646.1 3150601 3151134 + 255 M 40 120 G 0 3 M 28 84 5 0 2 I 0 57 3 0 2 M 52 156 5 0 2 I 0 75 3 0 2 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150602 3151134 255 + . gene_id 5 ; sequence CbirOr200CTE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3150602 3150808 . + . KQ414646.1 exonerate:protein2genome:local exon 3150602 3150808 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150809 3150810 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150809 3150869 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150868 3150869 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150870 3151025 . + . KQ414646.1 exonerate:protein2genome:local exon 3150870 3151025 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3151026 3151027 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3151026 3151104 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3151103 3151104 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3151105 3151134 . + . KQ414646.1 exonerate:protein2genome:local exon 3151105 3151134 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150602 3151134 255 + . alignment_id 5 ; Query CbirOr200CTE ; Align 3150602 233 120 ; Align 3150725 273 84 ; Align 3150870 301 156 ; Align 3151105 353 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr200CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 231 -> 300 Target range: 3160720 -> 3160927 232 : PheGluTyrAlaTyrIleValAsnLysLysPheAlaValIleIleThrIleGlnPh : 250 |||..!!:!||| ! |||:!!||| !||||||::!:!!! !!:.!!! ||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3160721 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3160775 251 : eAlaValSerMetLeuValValCysSerAsnLeuTyrArgIleAlaMetAlaAlaA : 269 | !|||!!!! :!!..!:!!|||! !||||||!:!|||:!:.!!..!.!! ! eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3160776 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3160832 270 : snTyrMetSerTyrIleProLeuValValTyrThrSerAlaIleLeuMetGlnIle : 287 ||| !..! !:!! !!|||:!! !!:!! ! !::!:!:!!! |||||| alTyrSerGlnValLeuAlaLeuIleProPheMetValSerValPheAlaGlnIle 3160833 : TGTATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATA : 3160886 288 : PheIleTyrCysTrpPheGlyAsnGluValLysLeuLys : 300 ||| !! !||||||!:!|||||||||..!|||:!!||| PheTyrCysCysTrpTyrGlyAsnGluThrLysValLys 3160887 : TTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG : 3160927 vulgar: CbirOr200CTE 231 300 . KQ414646.1 3160720 3160927 + 154 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160721 3160927 154 + . gene_id 6 ; sequence CbirOr200CTE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160721 3160927 . + . KQ414646.1 exonerate:protein2genome:local exon 3160721 3160927 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160721 3160927 154 + . alignment_id 6 ; Query CbirOr200CTE ; Align 3160721 232 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr200CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 231 -> 300 Target range: 3174931 -> 3175138 232 : PheGluTyrAlaTyrIleValAsnLysLysPheAlaValIleIleThrIleGlnPh : 250 |||..!!:!||| ! |||:!!||| !||||||::!:!!! !!:.!!! ||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3174932 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3174986 251 : eAlaValSerMetLeuValValCysSerAsnLeuTyrArgIleAlaMetAlaAlaA : 269 | !|||!!!! :!!..!:!!|||! !||||||!:!|||:!:.!!..!.!! ! eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3174987 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3175043 270 : snTyrMetSerTyrIleProLeuValValTyrThrSerAlaIleLeuMetGlnIle : 287 ||| !..! !:!! !!|||:!! !!:!! ! !::!:!:!!! |||||| alTyrSerGlnValLeuAlaLeuIleProPheMetValSerValPheAlaGlnIle 3175044 : TGTATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATA : 3175097 288 : PheIleTyrCysTrpPheGlyAsnGluValLysLeuLys : 300 ||| !! !||||||!:!|||||||||..!|||:!!||| PheTyrCysCysTrpTyrGlyAsnGluThrLysValLys 3175098 : TTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG : 3175138 vulgar: CbirOr200CTE 231 300 . KQ414646.1 3174931 3175138 + 154 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174932 3175138 154 + . gene_id 7 ; sequence CbirOr200CTE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174932 3175138 . + . KQ414646.1 exonerate:protein2genome:local exon 3174932 3175138 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3174932 3175138 154 + . alignment_id 7 ; Query CbirOr200CTE ; Align 3174932 232 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr200CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 123 -> 236 Target range: 3160062 -> 3160407 124 : ThrLeuArgTyrLeuIleLeuValLeuMetSerIleSerSerIleIleLeuThrSe : 142 :!!:!! !||| !:!!! !..!:!!:!!||| !!!.!!:!! :!! !|| SerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValTrpMetLeuSe 3160063 : TCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTATGGATGTTGTC : 3160117 143 : rValPheThrValLeuThrAsnHisAsnLeuThrTyrAsnThrTrpIleProPheA : 161 |!.!.!.|||!.!!!!! !! !....!.||| !! !.....!|||:!!||||||: rAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrpLeuProPheA 3160118 : GGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGGTTACCTTTCG : 3160174 162 : snTyr<->SerProProAlaValPhePheLeuValTyrThrHisGlnLeuIleAla : 178 !!||| :!! !! !!.!:!!||| !|||..!|||.!!:!!|||!!!:!!.!! spTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGlnPheValThr 3160175 : ATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAGTTTGTAACT : 3160228 179 : MetSerThrSerGlyValValAsnValAlaCysAspSerLeuLeuCysGlyPheLe : 197 :!!! ! !! ! !..!!.!! !:!!!.! !|||!:!|||!!! !!|||.!.|| LeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheSerGlyLeuLe 3160229 : CTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCAGCGGACTGTT : 3160285 198 : uLeuTyrIleCysCysGlnLeuGluIleLeuArgTyrArgLeuSerLysIleIleH : 216 |:!!:!!|||! !||||||!!!|||||||||!:!:!!||||||!.!!..|||! !! uIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysSerIleLysP 3160286 : GATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGAGCATTAAAC : 3160342 217 : isGlyGlnAspIle<->LeuHisAspCysValTyrHisHisAsnArgIlePheGlu : 233 !! !::!!!: ! ! ! .!.|||!.!!:!|||||| !!||||||!:!:!! roAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrArgIleTyrLys 3160343 : CTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGCATATACAAG : 3160396 234 : TyrAlaTyr : 236 !:!...||| PheValTyr 3160397 : TTTgtctac : 3160407 vulgar: CbirOr200CTE 123 236 . KQ414646.1 3160062 3160407 + 151 M 39 117 G 0 3 M 58 174 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160063 3160407 151 + . gene_id 8 ; sequence CbirOr200CTE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160063 3160407 . + . KQ414646.1 exonerate:protein2genome:local exon 3160063 3160407 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160063 3160407 151 + . alignment_id 8 ; Query CbirOr200CTE ; Align 3160063 124 117 ; Align 3160183 163 174 ; Align 3160360 221 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr200CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 228 -> 300 Target range: 3178372 -> 3178591 229 : AsnArgIlePheGluTyrAlaTyrIleValAsnLysLysPheAlaValIleIleTh : 247 ||| ||| ...!:!.!! ! ! ||||||! !||| ! !!!:||| AsnPheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePh 3178373 : aatttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTT : 3178427 248 : rIleGlnPheAlaValSerMetLeuValValCysSerAsnLeuTyrArgIleAlaM : 266 !:!:||||||:!!:!!||| ! !|||:!!|||! !!:!:!!|||!:!!!::!!! eLeuGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerT 3178428 : CCTGCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGA : 3178484 267 : etAlaAlaAsnTyr<->MetSerTyrIleProLeuValValTyrThrSerAlaIle : 283 ! ! ! !:! |||!:!!:!:!! !! !!.! !||| !!!!..!!!: hrIleAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMet 3178485 : CGATTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATG : 3178538 284 : LeuMetGlnIlePheIleTyrCysTrpPheGlyAsnGluValLysLeuLys : 300 |||! !|||:!:!:!:!!||||||||||||||||||||||||! !|||||| LeuThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys 3178539 : CTCACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: CbirOr200CTE 228 300 . KQ414646.1 3178372 3178591 + 133 M 42 126 G 0 3 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178373 3178591 133 + . gene_id 9 ; sequence CbirOr200CTE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178373 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178373 3178591 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178373 3178591 133 + . alignment_id 9 ; Query CbirOr200CTE ; Align 3178373 229 126 ; Align 3178502 271 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr200CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 11 -> 117 Target range: 3179646 -> 3179961 12 : GlyPheAlaGlyCysTrpGlnProLeuSerTrpThrSerLeuSerLysAsnIleMe : 30 .!!.!!!.!|||||||||::!|||:!!||||||:!!||| !! !|||!.. !!! SerIleGlyGlyCysTrpArgProIleSerTrpSerSerThrTyrLysThrAlaIl 3179647 : aGTATCGGTGGCTGTTGGAGACCGATCTCGTGGTCTTCGACGTACAAAACGGCAAT : 3179701 31 : tTyrLysAlaTyrAlaThrPheLeuIleSerSerLeuTyrIlePheLeuIleSerG : 49 :|||!!.!.!|||.!!..!.!!:!!:!!! !! ! ! !! !|||:!!:!!|||| eTyrAsnValTyrThrValLeuValLeuIleMetGlyValAsnPheMetValSerG 3179702 : CTACAATGTCTACACCGTTCTCGTATTAATCATGGGTGTTAATTTCATGGTTTCGC : 3179758 50 : lnPheIleHisValAlaLeuAsnValGlyAsnSerAspGluPheThrAspAlaLeu : 67 ||||| ! !:!! !!!!.!:!!! !!.! !.!.!!:|||..!||| ! ! lnPheGlySerMet---PheThrIleGluThrValGlnAspPheValAspLeuThr 3179759 : AATTTGGCAGCATG---TTCACCATAGAAACCGTACAAGATTTCGTCGACCTTACT : 3179809 68 : TyrMetMetLeuThrIleLeuValAlaGlyTyrLysGlnValTyrMetTrpIleAs : 86 |||!!: :!!:!!:!:!!!|||!.! !!! !|||! ! ! !!:!! !.!! ! TyrIleCysValSerValPheValGlyCysCysLysLeuSerAsnValValPheTy 3179810 : TACATATGCGTCTCCGTGTTCGTCGGTTGTTGCAAGCTGTCAAACGTGGTGTTCTA : 3179866 87 : pArgLysAsnPheMetIleIleIleAsnValLeuThrGluGluProPheAlaProC : 105 !||||||:!!.!!!!: !:!:!!:|||:!!!!!! !|||!!:|||! !||| !! rArgLysAspIleIleAspLeuMetAsnIlePheMetGluAspProCysAlaCysS 3179867 : TCGGAAAGATATCATAGACCTGATGAACATCTTCATGGAGGATCCTTGTGCATGTT : 3179923 106 : ysGluSerHisGluLeuMetIleGlnGluLysPheGlu : 117 .!.!.!.!.||| !..!:!:|||! !!:!!:!!!: erAsnLysGluGluAspGlnValGlnAlaArgTyrAsp 3179924 : CGAACAAGGAGGAGGACCAGGTGCAAGCGAGATACGAC : 3179961 vulgar: CbirOr200CTE 11 117 . KQ414646.1 3179646 3179961 + 131 M 42 126 G 1 0 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3179647 3179961 131 + . gene_id 10 ; sequence CbirOr200CTE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3179647 3179961 . + . KQ414646.1 exonerate:protein2genome:local exon 3179647 3179961 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3179647 3179961 131 + . alignment_id 10 ; Query CbirOr200CTE ; Align 3179647 12 126 ; Align 3179773 55 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr200CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 130 -> 236 Target range: 3174293 -> 3174618 131 : ValLeuMetSerIleSerSerIleIleLeuThrSerValPheThrValLeuThrAs : 149 :::||| ||| ||| !!!:!!|||:!!||||||!.!!!!! !! LeuLeu***ArgIleTyrCysIleTrpPheSerSerIlePheThrAlaPheLysIl 3174294 : ctcttgtagagaatttactgtatatggTTCTCGTCGATCTTCACGGCTTTTAAGAT : 3174348 150 : nHisAsnLeuThrTyrAsnThrTrpIleProPheAsnTyr----SerProProAla : 166 !....!.||| !! !... !|||:!! !!|||...! ####:!! !! !!.! eArgGluLeuProLeuArgGlyTrpLeuThrPheArgLeu####AlaThrLeuGly 3174349 : CAGAGAGTTACCCCTTCGAGGATGGTTAACCTTTCGATTATAGAGCCACATTGGGT : 3174403 167 : ValPhePheLeuValTyrThrHisGlnLeuIleAlaMetSerThrSerGlyValVa : 185 :!!||| !|||..!|||.!!:!!|||!!!:!!.!!:!!! ! ! ! ! !!. IlePheSerLeuThrTyrAlaTyrGlnPheValThrLeuIlePheLeuThrSerAl 3174404 : ATTTTCAGCCTTACCTACGCTTATCAGTTTGTAACTCTGATATTCCTTACTTCTGC : 3174460 186 : lAsnValAlaCysAspSerLeuLeuCysGlyPheLeuLeuTyrIleCysCysGlnL : 204 !! !:!!!.!! !|||!:!|||!!! !!|||.!.|||:!!:!!|||! !||||||! aIleIleGlySerAspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnP 3174461 : TATTATCGGTTCTGACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAAT : 3174517 205 : euGluIleLeuArgTyrArgLeuSerLysIleIleHisGlyGlnAspIle<->Leu : 221 !!|||||||||!:!:!!||||||!.!!..|||! !! !! !::!!!: ! ! heGluIleLeuGlnHisArgLeuLysSerIleLysProAspArgGluTyrSerAla 3174518 : TCGAGATACTCCAACATCGTCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCG : 3174571 222 : HisAspCysValTyrHisHisAsnArgIlePheGluTyrAlaTyr : 236 ! .!.|||!.!!:!|||||| !!||||||!:!:!!!:!...||| LysGlnCysAlaPheHisHisTyrArgIleTyrLysPheValTyr 3174572 : AAACAGTGTGCTTTTCATCATTATCGCATATACAAGTTTgtctac : 3174618 vulgar: CbirOr200CTE 130 236 . KQ414646.1 3174293 3174618 + 116 M 32 96 F 0 4 M 58 174 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174294 3174618 116 + . gene_id 11 ; sequence CbirOr200CTE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174294 3174618 . + . KQ414646.1 exonerate:protein2genome:local exon 3174294 3174618 . + . insertions 3 ; deletions 0 ; frameshifts 4 KQ414646.1 exonerate:protein2genome:local similarity 3174294 3174618 116 + . alignment_id 11 ; Query CbirOr200CTE ; Align 3174294 131 96 ; Align 3174394 163 174 ; Align 3174571 221 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr200CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 234 -> 300 Target range: 3180466 -> 3180667 235 : AlaTyrIleValAsnLysLysPheAlaValIleIleThrIleGlnPheAlaValSe : 253 ||| ! |||:!!||| ! !...!. !:!!! !!: ! !|||||| !! !|| AlaGluIleMetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePheGlySe 3180467 : GCTGAAATAATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTTCGGAAG : 3180521 254 : rMetLeuValValCysSerAsnLeuTyrArgIleAlaMetAlaAlaAsnTyrMetS : 272 |.!.:!!|||:!!||| !!:!||| !!:!:!: !! |||! !! ! !! ! rPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleLeuSerT 3180522 : CTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTCTCAGCA : 3180578 273 : er<->TyrIleProLeuValValTyrThrSerAlaIleLeuMetGlnIlePheIle : 289 !! !:!:!! !! !::: ||| |||:::||||||:!!|||! !|||:!! hrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPheLeu 3180579 : CCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGCTTTCTT : 3180632 290 : TyrCysTrpPheGlyAsnGluValLysLeuLys : 300 |||||||||!:!||||||||||||!:! !||| TyrCysTrpTyrGlyAsnGluValArgThrLys 3180633 : TACTGTTGGTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: CbirOr200CTE 234 300 . KQ414646.1 3180466 3180667 + 113 M 38 114 G 0 3 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180467 3180667 113 + . gene_id 12 ; sequence CbirOr200CTE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180467 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180467 3180667 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180467 3180667 113 + . alignment_id 12 ; Query CbirOr200CTE ; Align 3180467 235 114 ; Align 3180584 273 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr202 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 222 Query range: 149 -> 313 Target range: 3155481 -> 3156012 150 : AspArgProLeuProPheLysThrTyrLeuProTyrSerIleSerGlyLeuPhePr : 168 ...||||||||||||!:!::!! !!::||||||! !!:! !!!! !|||.!! ! SerArgProLeuProTyrArgIleTrpLeuProCysAsnTyrThrProLeuIleTh 3155482 : TCACGTCCTTTACCGTATCGAATTTGGCTACCTTGCAATTACACCCCGTTAATTAC : 3155536 169 : oTyrValAlaThrTyrLeuGlnHisValGlyAlaIlePheTyrGlyValLeuLeuA : 187 !||| !:!!! !||| !! !!. !! !|||:!! ! .!!!.!:!!:!!: rTyrCysSerIleTyrThrLeuGlnCysValAlaLeuAlaLeuSerAlaMetMetH 3155537 : TTACTGTTCGATTTACACTCTCCAATGTGTGGCACTCGCTCTAAGCGCTATGATGC : 3155593 188 : snValAlaPheAspThrLeuValTyrGlyPheThrLeuHisValCysGlyGlnIle : 205 !!||||||! !|||!:!|||:!!! !|||.!. !||||||..!! !||||||||| isValAlaCysAspSerLeuIleCysGlyLeuLeuLeuHisThrTyrGlyGlnIle 3155594 : ACGTCGCCTGCGACAGTTTGATCTGCGGCCTGCTGTTACACACTTACGGCCAGATC : 3155647 206 : GluLeuLeuArgHisArgLeuSerGluIlePheArgAsnTyrProAspThrGluAr : 224 |||:!!||| !! !||||||!.. ||| ...||| ! |||...!: GluIleLeuGlyCysArgLeuLysThrIleLysGluAsnGluSerLysThrSerLy 3155648 : GAGATCCTCGGTTGTCGTCTGAaaacgataaaagaaaacgagagtAAGACGTCCAA : 3155704 225 : gThrAspSerGlyLysAspAlaMetIleAspGluCysValLysHisHisLeuHis{ : 243 ! ! ! ! !! ! :!! !:!:||| !!..!|||||| ! !:!!!!.{ sLeuCysValArgTyrAsnAsnLeuIleTyrArgCysValVal***SerValGln{ 3155705 : GTTGTGCGTTCGTTACAACAACCTTATCTATCGGTGCGTAGTGTGAAGCGTTCAA{ : 3155761 244 : Va} >>>> Target Intron 1 >>>> {l}HisGluIleValArgArgIle : 250 ||} 39 bp {|} !..!.!!..! !! !||| Va}-+ +-{l}CysArgPheThrAlaMetIle 3155762 : GT}tt.........................aa{T}TGCAGATTCACCGCTATGATA : 3155821 251 : GlnSerLeuPheValTrpThrValThrValLeuPheIlePheSerMetValThrLe : 269 .!...!! !|||! ! !.!!:!! !..!! !||| ! |||! !:!!.!!:! AsnGluGlnPheGluMetAlaIlePheThrGlnPheAlaValSerThrLeuAlaIl 3155822 : AACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGTGAGTACGCTGGCGAT : 3155878 270 : uCysThrSerIlePheGlnMetSerLysLysGluLeuLeuSerAlaLysPhePheS : 288 !||| !!:!:!!!:!! !:!:!!! !..!!!::!! ! !! !!:!!:! ! . eCysPheAsnLeuTyrLeuLeuThrGlySerAspValThrProIleArgTyrValG 3155879 : ATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGACGCCGATTAGGTATGTGG : 3155935 289 : erLeuLeuLeuTyrLeuGlyCysMetLeuPheGlnValPheLeuTyrCysTrpTyr : 306 .!:!!:!!:!!||| !.!!||||||||| |||:!!|||:!!|||||||||||| luIleIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysTrpTyr 3155936 : AAATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTGGTAC : 3155989 307 : GlyAsnGluLeuGluLeuLys : 313 |||||||||:!!:!!|||||| GlyAsnGluValLysLeuLys 3155990 : GGGAACGAAGTTAAGCTGAAG : 3156012 vulgar: CbirOr202 149 313 . KQ414646.1 3155481 3156012 + 222 M 93 279 S 0 2 5 0 2 I 0 35 3 0 2 S 1 1 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155482 3156012 222 + . gene_id 1 ; sequence CbirOr202 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3155482 3155762 . + . KQ414646.1 exonerate:protein2genome:local exon 3155482 3155762 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3155763 3155764 . + . intron_id 1 ; splice_site "TT" KQ414646.1 exonerate:protein2genome:local intron 3155763 3155801 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3155800 3155801 . + . intron_id 0 ; splice_site "AA" KQ414646.1 exonerate:protein2genome:local cds 3155802 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155802 3156012 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155482 3156012 222 + . alignment_id 1 ; Query CbirOr202 ; Align 3155482 150 279 ; Align 3155803 244 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr202 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 246 -> 313 Target range: 3150607 -> 3150808 247 : ValArgArgIleGlnSerLeuPheValTrpThrValThrValLeuPheIlePheSe : 265 ||| !! !!!:|||..! !||| !|||! !:!! !|||! !.!!:!!! || ValPheThrMetGlnGluLysPheArgTrpIleIleGlyValGlnLeuLeuSerSe 3150608 : GTTTTCACGATGCAAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTTATCGAG : 3150662 266 : rMetValThrLeuCysThrSerIlePheGlnMetSerLysLysGluLeuLeuSerA : 284 |! !:!!..!:!!||| !! !:!:!:!:!!:!!:!!!!.! ! ! !:!!|||: rThrLeuValValCysPheIleLeuTyrGluLeuAlaAsnThrProProIleSerS 3150663 : CACGCTGGTAGTGTGTTTCATCCTGTACGAATTGGCGAACACGCCTCCAATCAGCT : 3150719 285 : laLysPhePheSerLeuLeuLeuTyrLeuGlyCysMetLeuPheGlnValPheLeu : 302 !!|||!:!.!...!!!!:!!|||||||||!.!||||||:!! |||:!!|||!!! erLysTyrLeuGlnPheValLeuTyrLeuAlaCysMetMetThrGlnIlePhePhe 3150720 : CCAAGTACCTGCAATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATCTTCTTT : 3150773 303 : TyrCysTrpTyrGlyAsnGluLeuGluLeuLys : 313 |||||||||||||||.!.:!!|||:!!|||||| TyrCysTrpTyrGlyGluGlnLeuLysLeuLys 3150774 : TACTGCTGGTACGGCGAGCAGTTGAAACTGAAG : 3150808 vulgar: CbirOr202 246 313 . KQ414646.1 3150607 3150808 + 150 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150608 3150808 150 + . gene_id 2 ; sequence CbirOr202 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150608 3150808 . + . KQ414646.1 exonerate:protein2genome:local exon 3150608 3150808 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150608 3150808 150 + . alignment_id 2 ; Query CbirOr202 ; Align 3150608 247 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr202 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 242 -> 313 Target range: 3178378 -> 3178591 243 : ValHisGluIleValArgArgIleGlnSerLeuPheValTrpThrValThrValLe : 261 ::: ....!!..!!:!! !:!:.!.!!!:!!||| !!::! !:!! !:!!! IleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLeuGl 3178379 : atttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCTGCA : 3178433 262 : uPheIlePheSerMetValThrLeuCysThrSerIlePheGlnMetSerLysLysG : 280 !||| !.!!||| !..!..!|||||| !||||||!:!:!!||||||! !! . nPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrIleA 3178434 : ATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGATTA : 3178490 281 : luLeuLeuSerAlaLysPhePheSerLeuLeuLeuTyrLeuGlyCysMetLeuPhe : 298 !.! !!!!||| !!!.||| !!!!!! ! !! !|||||| !!||||||||| snProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeuThr 3178491 : ATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACG : 3178544 299 : GlnValPheLeuTyrCysTrpTyrGlyAsnGluLeuGluLeuLys : 313 ||||||!:!||||||||||||!:!|||||||||:!! !|||||| GlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys 3178545 : CAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: CbirOr202 242 313 . KQ414646.1 3178378 3178591 + 140 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178379 3178591 140 + . gene_id 3 ; sequence CbirOr202 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178379 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178379 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178379 3178591 140 + . alignment_id 3 ; Query CbirOr202 ; Align 3178379 243 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr202 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 256 -> 313 Target range: 3180496 -> 3180667 257 : ThrValThrValLeuPheIlePheSerMetValThrLeuCysThrSerIlePheGl : 275 |||:!! !!.!! !|||.!! |||.!.:!!..!:!!||| !|||:!:.!!|| ThrMetPheAlaGlnPhePheGlySerPheMetValIleCysLeuSerLeuIleGl 3180497 : ACGATGTTCGCCCAGTTTTTCGGAAGCTTTATGGTGATCTGCCTGAGCCTGATTCA : 3180551 276 : nMetSerLysLysGluLeuLeuSerAlaLysPhePheSerLeuLeuLeuTyrLeuG : 294 |:!!! !!!. !!!::!!||||||.!!:!!|||!!.:!! !:::...||||||. nLeuLeuAsnAlaAspIleLeuSerThrGluPheLeuAlaThrIlePheTyrLeuS 3180552 : GTTGTTAAACGCAGATATTCTCAGCACCGAATTCTTAGCGACGAtattttatctga : 3180608 295 : lyCysMetLeuPheGlnValPheLeuTyrCysTrpTyrGlyAsnGluLeuGluLeu : 312 .. :::|||.!.||| !|||||||||||||||||||||||||||:!!..! ! erSerIleLeuLeuGlnSerPheLeuTyrCysTrpTyrGlyAsnGluValArgThr 3180609 : gctcgatACTGCTGCAGAGCTTTCTTTACTGTTGGTACGGAAACGAAGTGAGAACG : 3180662 313 : Lys : 313 ||| Lys 3180663 : AAG : 3180667 vulgar: CbirOr202 256 313 . KQ414646.1 3180496 3180667 + 135 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180497 3180667 135 + . gene_id 4 ; sequence CbirOr202 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180497 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180497 3180667 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180497 3180667 135 + . alignment_id 4 ; Query CbirOr202 ; Align 3180497 257 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr202 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 247 -> 313 Target range: 3164989 -> 3165184 248 : ArgArgIleGlnSerLeuPheValTrpThrValThrValLeuPheIlePheSerMe : 266 !:!!:!:!:.!...! !||| ! !! !:!!! ! !! !||| !.!.||||| LysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMe 3164990 : AAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCAT : 3165044 267 : tValThrLeuCysThrSerIlePheGlnMetSerLysLysGluLeuLeuSerAlaL : 285 | !..!:!!||| !!:!:!!!:!!:!|||!!!:!!! :!! :!!......| tSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---MetAspThrL 3165045 : GTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---ATGGAcacga : 3165098 286 : ysPhePheSerLeuLeuLeuTyrLeuGlyCysMetLeuPheGlnValPheLeuTyr : 303 ||||| ...::::!!||||||! ! !|||! :!! |||:!!|||! !||| ysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyr 3165099 : aattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTAT : 3165152 304 : CysTrpTyrGlyAsnGluLeuGluLeuLys : 313 ||||||||||||||||||:!!:!!! !||| CysTrpTyrGlyAsnGluValLysHisLys 3165153 : TGCTGGTACGGCAACGAAGTGAAACATAAG : 3165184 vulgar: CbirOr202 247 313 . KQ414646.1 3164989 3165184 + 114 M 33 99 G 1 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164990 3165184 114 + . gene_id 5 ; sequence CbirOr202 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164990 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164990 3165184 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3164990 3165184 114 + . alignment_id 5 ; Query CbirOr202 ; Align 3164990 248 99 ; Align 3165089 282 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr202 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 247 -> 313 Target range: 3158461 -> 3158656 248 : ArgArgIleGlnSerLeuPheValTrpThrValThrValLeuPheIlePheSerMe : 266 !:!!:!:!:.!...! !||| ! !! !:!!! ! !! !||| !.!.||||| LysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMe 3158462 : AAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCAT : 3158516 267 : tValThrLeuCysThrSerIlePheGlnMetSerLysLysGluLeuLeuSerAlaL : 285 | !..!:!!||| !!:!:!!!:!!:!|||!!!:!!! :!! :!!......| tSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---MetAspThrL 3158517 : GTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---ATGGAcacga : 3158570 286 : ysPhePheSerLeuLeuLeuTyrLeuGlyCysMetLeuPheGlnValPheLeuTyr : 303 ||||| ...::::!!||||||! ! !|||! :!! |||:!!|||! !||| ysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyr 3158571 : aattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTAT : 3158624 304 : CysTrpTyrGlyAsnGluLeuGluLeuLys : 313 ||||||||||||||||||:!!:!! !||| CysTrpTyrGlyAsnGluValLysAspLys 3158625 : TGTTGGTACGGCAACGAAGTGAAAGATAAG : 3158656 vulgar: CbirOr202 247 313 . KQ414646.1 3158461 3158656 + 113 M 33 99 G 1 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158462 3158656 113 + . gene_id 6 ; sequence CbirOr202 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158462 3158656 . + . KQ414646.1 exonerate:protein2genome:local exon 3158462 3158656 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3158462 3158656 113 + . alignment_id 6 ; Query CbirOr202 ; Align 3158462 248 99 ; Align 3158561 282 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr202 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 249 -> 323 Target range: 3160738 -> 3160957 250 : IleGlnSerLeuPheValTrpThrValThrValLeuPheIlePheSerMetValTh : 268 |||.!.:!! !||| ! |||:!!.!!..!! !|||:!: ! !!!! :!!|| IleAsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValThrThrMetTh 3160739 : ATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGAC : 3160793 269 : rLeuCysThrSerIlePheGlnMetSerLysLysGluLeuLeuSerAlaLysPheP : 287 |:!!||| !!:!:!!|||!:!:!!!!!:!!! :!!:!!! !||| :!! !!! rMetCysPheAsnLeuPheArgLeuThrGlnThrLysValTyrSer---GlnValL 3160794 : AATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGGTGTATTCG---CAAGTTT : 3160847 288 : heSerLeuLeuLeuTyrLeuGlyCysMetLeuPheGlnValPheLeuTyrCysTrp : 305 !.:!!|||:!!! !!:!:!!! ! !!:!!!!! |||:!!|||! !! !|||||| euAlaLeuIleProPheMetValSerValPheAlaGlnIlePheTyrCysCysTrp 3160848 : TAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGG : 3160901 306 : TyrGlyAsnGluLeuGluLeuLysSerLysSerIleGlyAspAlaIleTyrSer : 323 |||||||||||| !:!!:!!||| !:::..! ! !||| !::::::||| TyrGlyAsnGluThrLysValLysValArgAspGlnThrAspPheLeuPheSer 3160902 : TATGGAAACGAGACCAAAGTGAAGGTACGTGATCAAACAGACTTCttattctca : 3160957 vulgar: CbirOr202 249 323 . KQ414646.1 3160738 3160957 + 103 M 34 102 G 1 0 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160739 3160957 103 + . gene_id 7 ; sequence CbirOr202 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160739 3160957 . + . KQ414646.1 exonerate:protein2genome:local exon 3160739 3160957 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3160739 3160957 103 + . alignment_id 7 ; Query CbirOr202 ; Align 3160739 250 102 ; Align 3160841 285 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr202 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 249 -> 323 Target range: 3174949 -> 3175168 250 : IleGlnSerLeuPheValTrpThrValThrValLeuPheIlePheSerMetValTh : 268 |||.!.:!! !||| ! |||:!!.!!..!! !|||:!: ! !!!! :!!|| IleAsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValThrThrMetTh 3174950 : ATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGAC : 3175004 269 : rLeuCysThrSerIlePheGlnMetSerLysLysGluLeuLeuSerAlaLysPheP : 287 |:!!||| !!:!:!!|||!:!:!!!!!:!!! :!!:!!! !||| :!! !!! rMetCysPheAsnLeuPheArgLeuThrGlnThrLysValTyrSer---GlnValL 3175005 : AATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGGTGTATTCG---CAAGTTT : 3175058 288 : heSerLeuLeuLeuTyrLeuGlyCysMetLeuPheGlnValPheLeuTyrCysTrp : 305 !.:!!|||:!!! !!:!:!!! ! !!:!!!!! |||:!!|||! !! !|||||| euAlaLeuIleProPheMetValSerValPheAlaGlnIlePheTyrCysCysTrp 3175059 : TAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGG : 3175112 306 : TyrGlyAsnGluLeuGluLeuLysSerLysSerIleGlyAspAlaIleTyrSer : 323 |||||||||||| !:!!:!!||| !:::..! ! !||| !::::::||| TyrGlyAsnGluThrLysValLysValArgAspGlnThrAspPheLeuPheSer 3175113 : TATGGAAACGAGACCAAAGTGAAGGTACGTGATCAAACAGACTTCttattctca : 3175168 vulgar: CbirOr202 249 323 . KQ414646.1 3174949 3175168 + 103 M 34 102 G 1 0 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174950 3175168 103 + . gene_id 8 ; sequence CbirOr202 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174950 3175168 . + . KQ414646.1 exonerate:protein2genome:local exon 3174950 3175168 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3174950 3175168 103 + . alignment_id 8 ; Query CbirOr202 ; Align 3174950 250 102 ; Align 3175052 285 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr196 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 496 Query range: 123 -> 366 Target range: 3150041 -> 3151146 124 : ThrLeuArgTyrThrIleLeuIleGluThrSerTrpSerCysSerGlyLeuThrSe : 142 |||:!! !||||||||||||:!:||| !!!! !|||! ! !|||:!!|| ThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCysMetIleLeuSerSe 3150042 : ACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTGTATGATCCTCTCTTC : 3150096 143 : rLeuLeuAlaAspPheArgHisArgArgLeuThrTyrArgGluTrpValProTyrA : 161 |||||||!.!||||||!.!.!.|||..!|||.!!||||||! |||:!!|||!:!| rLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgAlaTrpLeuProPheA 3150097 : GTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAGCCTGGCTGCCCTTCG : 3150153 162 : spTyrSerSerTyrMetValPheCysValThrTyrAlaHisGlnPheLeuSerThr : 179 |||||||| ! ! !!:!! !:!!.!!|||!.!||||||.!!:!!:!! ! spTyrSerLeuProThrTyrTyrTyrIleAlaTyrValHisGlnIleValAlaLeu 3150154 : ATTACTCTCTGCCAACTTACTATTACATCGCGTACGTTCATCAGATCGTCGCGCTG : 3150207 180 : PheTyrCysAlaThrValAsnValAlaCysAspThrLeuIleCysGlyLeuLeuMe : 198 .!! ! :!! ! !|||||||||||||||..!:!!|||||||||||||||:! IleGlyThrSerLeuSerAsnValAlaCysAspValIleIleCysGlyLeuLeuVa 3150208 : ATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCATCTGCGGGTTGCTCGT : 3150264 199 : tHisValCysCysGlnIleGluIleLeuGluTyrArgLeuLysLysLeuSerArg< : 217 :|||!.!||| !!||| |||||||||:!!:!!|||:!!|||:!!:!!!!!!:! lHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMetLysGluMetThrGlnG 3150265 : TCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATGAAGGAGATGACGCAGG : 3150321 218 : ->AsnAlaAspThrLeuAspTyrCysIleArgHisHisAsnSerIlePhe{Gl} : 233 .!. ! !.!:!!! ! !:!!||| !|||:!!! !:!!!:!{! } luGlnArgProAsnIleGlyLysIleValArgPheHisAspTyrLeuTyr{Gl}++ 3150322 : AACAGAGGCCGAATATCGGGAAAATCGTTCGTTTCCACGATTATCTTTAC{GG}gt : 3150374 234 : >>>> Target Intron 1 >>>> {u}PheAlaArgLeuValAsnThrArgPh : 242 230 bp {!}!:!!.! ! !:!!.!. !!:!|| ++{y}TyrValPheThrMetGlnGluLysPh 3150375 : .........................ag{G}TACGTTTTCACGATGCAAGAGAAGTT : 3150629 243 : eThrGlnIleIleGlyPheGlnPheIleThrSerThrLeuIleIleCysSerAsnL : 261 |! ! !||||||||| ! |||.!!:!!:!!|||||||||:!!:!:|||! !! !| eArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuValValCysPheIleL 3150630 : CAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGGTAGTGTGTTTCATCC : 3150686 262 : euTyrGlnLeuSerLysSer<->ThrMetSerAlaAspAsnIleSerLeuIleVal : 278 |||||:!!|||:!!!!.!!! !!!!:|||:!! ! !!:!:..!!!!:!!:!! euTyrGluLeuAlaAsnThrProProIleSerSerLysTyrLeuGlnPheValLeu 3150687 : TGTACGAATTGGCGAACACGCCTCCAATCAGCTCCAAGTACCTGCAATTTGTCCTG : 3150740 279 : TyrThrPheCysMetLeuThrGlnIlePheIleTyrCysTrpPheGlySerLysVa : 297 ||| ! !||||||:!!||||||||||||.!!|||||||||!:!|||..!:!!:! TyrLeuAlaCysMetMetThrGlnIlePhePheTyrCysTrpTyrGlyGluGlnLe 3150741 : TACCTGGCCTGTATGATGACGCAGATCTTCTTTTACTGCTGGTACGGCGAGCAGTT : 3150797 298 : lLysSerLys >>>> Target Intron 2 >>>> SerLeuGluLeuThrAs : 306 !||| !||| 61 bp |||:!!|||:!!..! uLysLeuLys++ ++SerValGluIleValAr 3150798 : GAAACTGAAGgt.........................agAGCGTCGAGATTGTGCG : 3150885 307 : pArgIlePheGlnThrAspTrpProMetLeuAsnSerSerIleLysAsnSerLeuL : 325 !! !||||||:!!! !|||||| ! |||.!.!:!.!!||||||!!...!|||: gThrIlePheGluMetAspTrpIleProLeuGlnAsnGlyIleLysLysAspLeuI 3150886 : CACGATCTTCGAAATGGATTGGATACCTCTCCAGAACGGTATCAAGAAGGATTTGA : 3150942 326 : euIleIleMetLysArgAlaIleIleProIleGluPheThrThrAlaHisIleIle : 343 !!:!!:!: !!:!||||||!!:||||||||||||!!.||| !|||:!!!!:.!! leValValAlaArgArgAlaMetIleProIleGluLeuThrCysAlaTyrMetPhe 3150943 : TAGTCGTGGCGAGAAGAGCGATGATCCCGATCGAGTTGACCTGCGCGTACATGTTC : 3150996 344 : SerLeuAsnLeuGluSerPheValAla >>>> Target Intron 3 >>>> : 353 !!!:!!:!!|||.!.!!!||||||::! 79 bp ThrMetAspLeuAsnThrPheValSer++ ++ 3150997 : ACCATGGACTTGAACACCTTCGTCAGCgt.........................ag : 3151103 354 : LeuLeuLysIleSerTyrSerAlaTyrAsnLeuIleValArg : 366 |||||||||!!:|||||||||.!!|||||||||:!!! !||| LeuLeuLysMetSerTyrSerThrTyrAsnLeuLeuGluArg 3151104 : CTGTTGAAAATGTCCTACTCGACGTACAATCTGCTTGAAAGG : 3151146 vulgar: CbirOr196 123 366 . KQ414646.1 3150041 3151146 + 496 M 93 279 G 0 3 M 16 48 S 0 2 5 0 2 I 0 226 3 0 2 S 1 1 M 34 102 G 0 3 M 33 99 5 0 2 I 0 57 3 0 2 M 52 156 5 0 2 I 0 75 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150042 3151146 496 + . gene_id 1 ; sequence CbirOr196 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3150042 3150373 . + . KQ414646.1 exonerate:protein2genome:local exon 3150042 3150373 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150374 3150375 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150374 3150603 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150602 3150603 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150604 3150808 . + . KQ414646.1 exonerate:protein2genome:local exon 3150604 3150808 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150809 3150810 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150809 3150869 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3150868 3150869 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150870 3151025 . + . KQ414646.1 exonerate:protein2genome:local exon 3150870 3151025 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3151026 3151027 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3151026 3151104 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3151103 3151104 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3151105 3151146 . + . KQ414646.1 exonerate:protein2genome:local exon 3151105 3151146 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150042 3151146 496 + . alignment_id 1 ; Query CbirOr196 ; Align 3150042 124 279 ; Align 3150324 217 48 ; Align 3150605 234 102 ; Align 3150710 268 99 ; Align 3150870 301 156 ; Align 3151105 353 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr196 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 384 Query range: 126 -> 365 Target range: 3155418 -> 3156280 127 : TyrThrIleLeuIleGluThrSerTrpSerCysSerGlyLeuThrSerLeuLeuAl : 145 |||.!!||||||:!!|||:!!!!! !! ! !! !..!!!! !:!!|||||| TyrAlaIleLeuValGluSerThrValMetThrLeuSerPheGlyAlaLeuLeuLy 3155419 : TACGCGATTCTGGTCGAATCGACGGTGATGACTTTGTCTTTCGGTGCACTGTTGAA : 3155473 146 : aAspPheArgHisArgArgLeuThrTyrArgGluTrpValProTyrAspTyrSerS : 164 ! ..! |||! !||| !!|||||| |||:!!|||! !:!!|||!!! sPro---GluSerArgProLeuProTyrArgIleTrpLeuProCysAsnTyrThrP 3155474 : ACCA---GAATCACGTCCTTTACCGTATCGAATTTGGCTACCTTGCAATTACACCC : 3155527 165 : erTyrMetValPheCysValThrTyrAlaHisGlnPheLeuSerThrPheTyrCys : 182 !!! !!:..!!:!||| !! !|||.!!! !|||! !:!!:!! ! ! !! roLeuIleThrTyrCysSerIleTyrThrLeuGlnCysValAlaLeuAlaLeuSer 3155528 : CGTTAATTACTTACTGTTCGATTTACACTCTCCAATGTGTGGCACTCGCTCTAAGC : 3155581 183 : AlaThrValAsnValAlaCysAspThrLeuIleCysGlyLeuLeuMetHisValCy : 201 |||! !:!!:!!||||||||||||!:!||||||||||||||||||:!:|||..!! AlaMetMetHisValAlaCysAspSerLeuIleCysGlyLeuLeuLeuHisThrTy 3155582 : GCTATGATGCACGTCGCCTGCGACAGTTTGATCTGCGGCCTGCTGTTACACACTTA : 3155638 202 : sCysGlnIleGluIleLeuGluTyrArgLeuLysLysLeuSerArgAsn<->AlaA : 219 ! !!|||||||||||||||! ! !||||||||| :::......||| ::: rGlyGlnIleGluIleLeuGlyCysArgLeuLysThrIleLysGluAsnGluSerL 3155639 : CGGCCAGATCGAGATCCTCGGTTGTCGTCTGAaaacgataaaagaaaacgagagtA : 3155695 220 : spThrLeuAspTyrCysIleArgHisHisAsn >>>> Target Intron 1 > : 230 ! |||! ! ! ! |||:!!|||:!!:!!||| 69 bp ysThrSerLysLeuCysValArgTyrAsnAsn-+ 3155696 : AGACGTCCAAGTTGTGCGTTCGTTACAACAACct...................... : 3155730 231 : >>> SerIlePheGluPheAlaArgLeuValAsnThrArgPheThrGlnIleIle : 246 ..!! !! !..!|||.!! !:!!:!!||| !!:!||| !..! ||| +-AspAsnCysArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIle 3155731 : ...acGATAATTGCAGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATT : 3155845 247 : GlyPheGlnPheIleThrSerThrLeuIleIleCysSerAsnLeuTyrGlnLeuSe : 265 ! !|||||| ..!||||||||| ||||||! !|||||||||! !|||!! PheThrGlnPheAlaValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuTh 3155846 : TTCACTCAATTCGCGGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAAC : 3155902 266 : rLysSerThrMetSerAlaAspAsn<->IleSerLeuIleValTyrThrPheCysM : 283 ! !||| !:!!!!! !! !!.. :!:..!:!!|||:!!|||!:! !|||| rGlySerAspValThrProIleArgTyrValGluIleIleMetTyrSerSerCysM 3155903 : AGGATCAGATGTGACGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCA : 3155959 284 : etLeuThrGlnIlePheIleTyrCysTrpPheGlySerLysValLysSerLys > : 301 |||||||||||||||||||||||||||||!:!|||!:!:!!|||||| !||| etLeuThrGlnIlePheIleTyrCysTrpTyrGlyAsnGluValLysLeuLys++ 3155960 : TGCTCACGCAAATATTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAGgt. : 3156015 302 : >>> Target Intron 2 >>>> SerLeuGluLeuThrAspArgIlePheGln : 310 73 bp |||||||||:!!:!!:!!! !||||||!!. ++SerLeuGluIleSerAsnMetIlePheHis 3156016 : ........................agAGCCTCGAGATTTCTAATATGATTTTTCAC : 3156113 311 : ThrAspTrpProMetLeuAsnSerSerIleLysAsnSerLeuLeuIleIleMetLy : 329 !|||||| !! !!!!:!!!.!:!!! !|||...!:!:!!|||! !!!:|||! LeuAspTrpThrProPheAspLysAlaThrLysArgAsnIleLeuThrMetMetMe 3156114 : CTCGACTGGACACCGTTCGATAAAGCTACAAAACGAAATATACTAACTATGATGAT : 3156170 330 : sArgAlaIleIleProIleGluPheThrThrAlaHisIleIleSerLeuAsnLeuG : 348 !|||||| |||||||||.!!! !!:!!.!!.!:!::!!|||:!!||||||! tArgAlaSerSerProIleGluIleIleSerValArgValLeuSerValAsnLeuA 3156171 : GCGTGCGTCGTCGCCAATTGAAATCATCAGCGTTCGTGTGCTCTCCGTGAATCTCG : 3156227 349 : luSerPheValAlaLeuLeuLysIleSerTyrSerAlaTyrAsnLeuIleVal : 365 !:||||||||||||:!! !! ...|||... |||:::...::: spSerPheValAlaValSerIleAspLysTyrGlnLysThrAsnIlePheLeu 3156228 : ATTCGTTCGTCGCTGTCAGTATtgataaatatcaaaaaactaatattttcctt : 3156280 vulgar: CbirOr196 126 365 . KQ414646.1 3155418 3156280 + 384 M 20 60 G 1 0 M 70 210 G 0 3 M 12 36 5 0 2 I 0 65 3 0 2 M 44 132 G 0 3 M 27 81 5 0 2 I 0 69 3 0 2 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155419 3156280 384 + . gene_id 2 ; sequence CbirOr196 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3155419 3155727 . + . KQ414646.1 exonerate:protein2genome:local exon 3155419 3155727 . + . insertions 3 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3155728 3155729 . + . intron_id 1 ; splice_site "CT" KQ414646.1 exonerate:protein2genome:local intron 3155728 3155796 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3155795 3155796 . + . intron_id 0 ; splice_site "AC" KQ414646.1 exonerate:protein2genome:local cds 3155797 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155797 3156012 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156013 3156014 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156013 3156085 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3156084 3156085 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156086 3156280 . + . KQ414646.1 exonerate:protein2genome:local exon 3156086 3156280 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155419 3156280 384 + . alignment_id 2 ; Query CbirOr196 ; Align 3155419 127 60 ; Align 3155479 148 210 ; Align 3155692 218 36 ; Align 3155797 230 132 ; Align 3155932 274 81 ; Align 3156086 301 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr196 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 225 Query range: 122 -> 233 Target range: 3157794 -> 3158130 123 : AsnThrLeuArgTyrThrIleLeuIleGluThrSerTrpSerCysSerGlyLeuTh : 141 ||||||:!! !!||| !! |||::: ||| !! !! !! ! !:!!! AsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrValAr 3157795 : AACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATATACGTGAG : 3157849 142 : rSerLeuLeuAlaAspPheArgHisArgArgLeuThrTyrArgGluTrpValProT : 160 !||||||||| !||||||!!!:!!|||!:!|||! !!:!|||! !|||:!!|||| gSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProT 3157850 : ATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCT : 3157906 161 : yrAspTyrSerSerTyrMetValPheCysValThrTyrAlaHisGlnPheLeuSer : 178 ||||||||||| !! :!!||| !:!!|||! !!.!|||||| !:!!:!! yrAspTyrSerProAlaProIlePheIleLeuThrSerValHisGlnAlaIleAla 3157907 : ACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTCCGTCCATCAAGCTATAGCC : 3157960 179 : ThrPheTyrCysAlaThrValAsnValAlaCysAspThrLeuIleCysGlyLeuLe : 197 :!! |||..!||| !!.!|||.!! ||||||||| ! !|||||||| SerThrIleCysCysThrSerThrValThrValAspThrLeuTyrThrGlyLeuLe 3157961 : TCGACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTATACACTGGCTTGTT : 3158017 198 : uMetHisValCysCysGlnIleGluIleLeuGluTyrArgLeuLysLysLeu<->S : 215 |!!::!!:!!! !||||||.!!||||||||||||:!!||||||!:!!!.:!! ! uIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysT 3158018 : GATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAA : 3158074 216 : erArgAsnAlaAspThrLeuAspTyrCysIleArgHisHisAsnSerIlePheGlu : 233 !!..!.!.! !|||:!!:!! ! ! ||| !!:!||||||:!! !!|||!:!:!! hrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIleTyrGln 3158075 : CTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTATATACCAG : 3158128 vulgar: CbirOr196 122 233 . KQ414646.1 3157794 3158130 + 225 M 92 276 G 0 3 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157795 3158130 225 + . gene_id 3 ; sequence CbirOr196 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3157795 3158130 . + . KQ414646.1 exonerate:protein2genome:local exon 3157795 3158130 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157795 3158130 225 + . alignment_id 3 ; Query CbirOr196 ; Align 3157795 123 276 ; Align 3158074 215 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr196 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 217 Query range: 122 -> 233 Target range: 3164322 -> 3164658 123 : AsnThrLeuArgTyrThrIleLeuIleGluThrSerTrpSerCysSerGlyLeuTh : 141 ||||||:!! !!||| !! !|||:!! !! !!!! !! !!! ! ! !:!!! AsnThrIleGlyTyrTrpSerLeuLeuLeuIleCysAlaPheTrpIleTyrValAr 3164323 : AACACGATTGGCTACTGGAGTTTACTATTAATTTGTGCGTTCTGGATATACGTGAG : 3164377 142 : rSerLeuLeuAlaAspPheArgHisArgArgLeuThrTyrArgGluTrpValProT : 160 !|||||||||.!!||||||!!! !|||!:!|||! !!:!|||! !|||:!!|||| gSerLeuLeuThrAspPheSerSerArgLysLeuMetPheArgAlaTrpLeuProT 3164378 : ATCGCTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGCATGGTTACCCT : 3164434 161 : yrAspTyrSerSerTyrMetValPheCysValThrTyrAlaHisGlnPheLeuSer : 178 ||||||||||| !! :!!||| !:!!|||!:!!.!|||||| !:!!:!! yrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAlaIleAla 3164435 : ACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCC : 3164488 179 : ThrPheTyrCysAlaThrValAsnValAlaCysAspThrLeuIleCysGlyLeuLe : 197 .!! |||..!||| !!:!|||.!! |||:!!||| ! !|||||||| AlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLe 3164489 : GCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTT : 3164545 198 : uMetHisValCysCysGlnIleGluIleLeuGluTyrArgLeuLysLysLeu<->S : 215 |!!::!!:!!! !||||||.!!||||||||||||:!!||||||!:!!!.:!! ! uIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysT 3164546 : GATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAA : 3164602 216 : erArgAsnAlaAspThrLeuAspTyrCysIleArgHisHisAsnSerIlePheGlu : 233 !!..!.!.! !|||:!!:!! ! ! ||| !!:!||||||:!! !!|||!:!:!! hrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIleTyrGln 3164603 : CTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTATATACCAG : 3164656 vulgar: CbirOr196 122 233 . KQ414646.1 3164322 3164658 + 217 M 92 276 G 0 3 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164323 3164658 217 + . gene_id 4 ; sequence CbirOr196 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164323 3164658 . + . KQ414646.1 exonerate:protein2genome:local exon 3164323 3164658 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164323 3164658 217 + . alignment_id 4 ; Query CbirOr196 ; Align 3164323 123 276 ; Align 3164602 215 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr196 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 181 Query range: 123 -> 234 Target range: 3160062 -> 3160401 124 : ThrLeuArgTyrThrIleLeuIleGluThrSerTrpSerCysSerGlyLeuThrSe : 142 :!!:!! !||||||:!!! !! !! ! !||| !!!! !! ! !!:!! !|| SerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValTrpMetLeuSe 3160063 : TCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTATGGATGTTGTC : 3160117 143 : rLeuLeuAlaAspPheArgHisArgArgLeuThrTyrArgGluTrpValProTyrA : 161 | !:!!.!!! |||||| !|||..!||| !! !|||! !|||:!!|||!:!| rAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrpLeuProPheA 3160118 : GGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGGTTACCTTTCG : 3160174 162 : spTyrSerSerTyrMet<->ValPheCysValThrTyrAlaHisGlnPheLeuSer : 178 |||||!!!:!! :!! :!!||| !!:!!|||||||||:!!||||||:!!!!! spTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGlnPheValThr 3160175 : ATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAGTTTGTAACT : 3160228 179 : ThrPheTyrCysAlaThrValAsnValAlaCysAspThrLeuIleCysGlyLeuLe : 197 !.!.!:! !.!!|||!.!! !:!!!.! !|||!.!|||.!! !!|||||||| LeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheSerGlyLeuLe 3160229 : CTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCAGCGGACTGTT : 3160285 198 : uMetHisValCysCysGlnIleGluIleLeuGluTyrArgLeuLysLysLeuSerA : 216 |!!:|||:!!! !||||||.!!|||||||||:!!:!!|||||||||!..:!!!.!! uIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysSerIleLysP 3160286 : GATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGAGCATTAAAC : 3160342 217 : rgAsnAlaAsp<->ThrLeuAspTyrCysIleArgHisHisAsnSerIlePheGlu : 233 !:!! !!!: :!! ! ! ! ||| ! !|||||| !! !!|||!:!:!! roAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrArgIleTyrLys 3160343 : CTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGCATATACAAG : 3160396 234 : Phe : 234 ||| Phe 3160397 : TTT : 3160401 vulgar: CbirOr196 123 234 . KQ414646.1 3160062 3160401 + 181 M 43 129 G 0 3 M 53 159 G 0 3 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160063 3160401 181 + . gene_id 5 ; sequence CbirOr196 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160063 3160401 . + . KQ414646.1 exonerate:protein2genome:local exon 3160063 3160401 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160063 3160401 181 + . alignment_id 5 ; Query CbirOr196 ; Align 3160063 124 129 ; Align 3160195 167 159 ; Align 3160357 220 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr196 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 298 -> 369 Target range: 3165258 -> 3165545 299 : SerLysSerLeuGluLeuThrAspArgIlePheGlnThrAspTrpProMetLeuAs : 317 ||| !!||||||:!!||| !! !!! !||||||!!.!:!|||||| !! ||||| Ser***SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSerLeuAs 3165259 : TCGTAGAGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAA : 3165313 318 : nSerSerIleLysAsnSerLeuLeuIleIleMetLysArgAlaIleIleProIleG : 336 |!:!!:!:!!! !..:!!|||||||||!!:|||!:!||||||:!:! ||||||| nAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgProIleG 3165314 : CAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAG : 3165370 337 : luPheThrThrAlaHisIleIleSerLeuAsnLeuGluSerPheValAla >>>> : 353 ||||||||!:! !|||:!!:!!|||:!!|||||||||||||||:!!||| luPheThrSerIleHisValValSerValAsnLeuGluSerPheMetAla++ 3165371 : AGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt.... : 3165423 354 : Target Intron 1 >>>> LeuLeuLysIleSerTyrSerAlaTyrAsnLeu : 363 74 bp :!!:!!|||! !||||||||||||!:!|||:!! ++ValIleLysThrSerTyrSerAlaPheAsnMet 3165424 : .....................agGTAATAAAAACTTCGTACTCCGCGTTCAACATG : 3165525 364 : IleValArgMetGlnGln : 369 ||| !!:!! :!!||| IleGlnGlnSerLysGln 3165526 : ATCCAACAAAGCAAACAA : 3165545 vulgar: CbirOr196 298 369 . KQ414646.1 3165258 3165545 + 178 M 54 162 5 0 2 I 0 70 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3165259 3165545 178 + . gene_id 6 ; sequence CbirOr196 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3165259 3165420 . + . KQ414646.1 exonerate:protein2genome:local exon 3165259 3165420 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165421 3165422 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165421 3165494 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3165493 3165494 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165495 3165545 . + . KQ414646.1 exonerate:protein2genome:local exon 3165495 3165545 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3165259 3165545 178 + . alignment_id 6 ; Query CbirOr196 ; Align 3165259 299 162 ; Align 3165495 353 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr196 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 298 -> 353 Target range: 3158730 -> 3158895 299 : SerLysSerLeuGluLeuThrAspArgIlePheGlnThrAspTrpProMetLeuAs : 317 ||| !!||||||:!!||| !! !!! !||||||!!.!:!|||||| !! ||||| Ser***SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSerLeuAs 3158731 : TCGTAGAGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAA : 3158785 318 : nSerSerIleLysAsnSerLeuLeuIleIleMetLysArgAlaIleIleProIleG : 336 |!:!!:!:!!! !..:!!|||||||||!!:|||!:!||||||:!:! ||||||| nAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgProIleG 3158786 : CAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAG : 3158842 337 : luPheThrThrAlaHisIleIleSerLeuAsnLeuGluSerPheValAlaLeu : 353 ||||||||!:! !|||:!!:!!|||:!!|||||||||||||||:!!|||:!! luPheThrSerIleHisValValSerValAsnLeuGluSerPheMetAlaVal 3158843 : AGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAGTC : 3158895 vulgar: CbirOr196 298 353 . KQ414646.1 3158730 3158895 + 156 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158731 3158895 156 + . gene_id 7 ; sequence CbirOr196 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158731 3158895 . + . KQ414646.1 exonerate:protein2genome:local exon 3158731 3158895 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3158731 3158895 156 + . alignment_id 7 ; Query CbirOr196 ; Align 3158731 299 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr196 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 136 -> 234 Target range: 3174311 -> 3174612 137 : CysSerGlyLeuThrSerLeuLeuAlaAspPheArgHisArgArgLeuThrTyrAr : 155 ||| !!!:!!|||:!!!!!.!!! !|||!:! !|||..!||| !! !|| CysIleTrpPheSerSerIlePheThrAlaPheLysIleArgGluLeuProLeuAr 3174312 : tgtatatggTTCTCGTCGATCTTCACGGCTTTTAAGATCAGAGAGTTACCCCTTCG : 3174366 156 : gGluTrpVal-ProTyrAspTyrSerSerTyrMet<->ValPheCysValThrTyr : 172 |! !|||:!!#|||!:!||||||!!!:!! :!! :!!||| !!:!!|||||| gGlyTrpLeu#ProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyr 3174367 : AGGATGGTTAACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTAC : 3174421 173 : AlaHisGlnPheLeuSerThrPheTyrCysAlaThrValAsnValAlaCysAspTh : 191 |||:!!||||||:!!!!! !.!.!:! !.!!:!!!.!! !:!!!.!! !|||!. AlaTyrGlnPheValThrLeuIlePheLeuThrSerAlaIleIleGlySerAspAs 3174422 : GCTTATCAGTTTGTAACTCTGATATTCCTTACTTCTGCTATTATCGGTTCTGACAA : 3174478 192 : rLeuIleCysGlyLeuLeuMetHisValCysCysGlnIleGluIleLeuGluTyrA : 210 !|||.!! !!|||||||||!!:|||:!!! !||||||.!!|||||||||:!!:!!| nLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisA 3174479 : TCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATC : 3174535 211 : rgLeuLysLysLeuSerArgAsnAlaAsp<->ThrLeuAspTyrCysIleArgHis : 227 ||||||||!..:!!!.!! !:!! !!!: :!! ! ! ! ||| ! !||| rgLeuLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHis 3174536 : GTCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCAT : 3174589 228 : HisAsnSerIlePheGluPhe : 234 ||| !! !!|||!:!:!!||| HisTyrArgIleTyrLysPhe 3174590 : CATTATCGCATATACAAGTTT : 3174612 vulgar: CbirOr196 136 234 . KQ414646.1 3174311 3174612 + 147 M 22 66 F 0 1 M 8 24 G 0 3 M 53 159 G 0 3 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174312 3174612 147 + . gene_id 8 ; sequence CbirOr196 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174312 3174612 . + . KQ414646.1 exonerate:protein2genome:local exon 3174312 3174612 . + . insertions 6 ; deletions 0 ; frameshifts 1 KQ414646.1 exonerate:protein2genome:local similarity 3174312 3174612 147 + . alignment_id 8 ; Query CbirOr196 ; Align 3174312 137 66 ; Align 3174379 159 24 ; Align 3174406 167 159 ; Align 3174568 220 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr196 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 228 -> 300 Target range: 3178372 -> 3178591 229 : AsnSerIlePheGluPheAlaArgLeuValAsnThrArgPheThrGlnIleIleGl : 247 ||| ||| ...|||.!!!:! !||||||||| !||| ! ! !!:||| AsnPheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePh 3178373 : aatttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTT : 3178427 248 : yPheGlnPheIleThrSerThrLeuIleIleCysSerAsnLeuTyrGlnLeuSerL : 266 !.!.|||||| !! !|||:!! !:!::!:|||! !!:!:!!|||:!!:!!|||! eLeuGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerT 3178428 : CCTGCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGA : 3178484 267 : ys<->SerThrMetSerAlaAspAsnIleSerLeuIleValTyrThrPheCysMet : 283 ! !:! !!.!.||| !:!! !:!!!!!! ! ! !||| !! !|||||| hrIleAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMet 3178485 : CGATTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATG : 3178538 284 : LeuThrGlnIlePheIleTyrCysTrpPheGlySerLysValLysSerLys : 300 |||||||||:!:!:!:!!|||||||||||||||!:!:!!|||! !! !||| LeuThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys 3178539 : CTCACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: CbirOr196 228 300 . KQ414646.1 3178372 3178591 + 136 M 38 114 G 0 3 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178373 3178591 136 + . gene_id 9 ; sequence CbirOr196 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178373 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178373 3178591 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178373 3178591 136 + . alignment_id 9 ; Query CbirOr196 ; Align 3178373 229 114 ; Align 3178490 267 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr196 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 123 -> 215 Target range: 3177916 -> 3178192 124 : ThrLeuArgTyrThrIleLeuIleGluThrSerTrpSerCysSerGlyLeuThrSe : 142 |||:!! !! ! !||||||! !|||:!!:!! ! !! :!! !:!!.!!.. ThrIleTyrCysGluIleLeuAsnGluSerAlaAlaPheLeuAlaThrValAlaGl 3177917 : ACAATCTACTGCGAGATCCTGAACGAATCCGCCGCATTCTTAGCTACGGTAGCACA : 3177971 143 : rLeuLeuAlaAspPheArgHisArgArgLeuThrTyrArgGluTrpValProTyrA : 161 !! ! !! ! !.!.||| !!:!! !||| !! !!!:||||||||||||| nTyrAsnGluPheIleArgSerLysThrLeuProIleSerAspTrpValProTyrA 3177972 : GTACAACGAATTCATACGCTCCAAGACTTTGCCAATATCCGACTGGGTGCCTTACG : 3178028 162 : spTyrSerSerTyrMetValPheCysValThrTyrAlaHisGlnPheLeuSerThr : 179 ||! |||||| ! ! :!!!:! :!!:!! !|||||| :!!.!! ! spLeuSerSerGlnLysLeuTyrThrIleSerLeuLeuHisGlnThrIleGlyLeu 3178029 : ATTTGTCCTCGCAAAAATTGTACACGATATCTCTGTTGCATCAAACGATAGGCCTG : 3178082 180 : PheTyrCysAlaThrValAsnValAlaCysAspThrLeuIleCysGlyLeuLeuMe : 198 .!. !||||||!.!..!!:!|||||| !!!:|||||||||...||||||:!!!! MetValCysAlaAsnThrSerValAlaAsnGluThrLeuIleAlaGlyLeuMetIl 3178083 : ATGGTCTGTGCGAACACCAGCGTGGCAAACGAAACACTTATCGCAGGGCTGATGAT : 3178139 199 : tHisValCysCysGlnIleGluIleLeuGluTyrArgLeuLysLysLeuSer : 215 :!!.!.! !!...|||.!!||||||!!! :!!||| !!:!!!.|||!!! eGlnAlaGlyAlaGlnPheGluIlePheCysHisArgAlaArgAsnLeuThr 3178140 : ACAAGCTGGCGCGCAATTCGAGATATTTTGCCATCGAGCGAGAAATCTAACC : 3178192 vulgar: CbirOr196 123 215 . KQ414646.1 3177916 3178192 + 131 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3177917 3178192 131 + . gene_id 10 ; sequence CbirOr196 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3177917 3178192 . + . KQ414646.1 exonerate:protein2genome:local exon 3177917 3178192 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3177917 3178192 131 + . alignment_id 10 ; Query CbirOr196 ; Align 3177917 124 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr196 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 298 -> 350 Target range: 3160995 -> 3161151 299 : SerLysSerLeuGluLeuThrAspArgIlePheGlnThrAspTrpProMetLeuAs : 317 ||| !!|||||||||:!! !|||! !:!!|||:!!!:!:!!||| !! |||!: Ser***SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSe 3160996 : TCGTAGAGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAG : 3161050 318 : nSerSerIleLysAsnSerLeuLeuIleIleMetLysArgAlaIleIleProIleG : 336 !..!|||! !|||!!.!!!||||||! |||||| !|||:!!:!:! ||||||| rGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleG 3161051 : CCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAG : 3161107 337 : luPheThrThrAlaHisIleIleSerLeuAsnLeuGluSerPhe : 350 |||||||| !||| !:!!.!! !!:!!||||||||||||||| luPheThrGlyAlaPheValPheProValAsnLeuGluSerPhe 3161108 : AATTCACCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTT : 3161151 vulgar: CbirOr196 298 350 . KQ414646.1 3160995 3161151 + 130 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160996 3161151 130 + . gene_id 11 ; sequence CbirOr196 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160996 3161151 . + . KQ414646.1 exonerate:protein2genome:local exon 3160996 3161151 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160996 3161151 130 + . alignment_id 11 ; Query CbirOr196 ; Align 3160996 299 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr196 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 298 -> 350 Target range: 3175206 -> 3175362 299 : SerLysSerLeuGluLeuThrAspArgIlePheGlnThrAspTrpProMetLeuAs : 317 ||| !!|||||||||:!! !|||! !:!!|||:!!!:!:!!||| !! |||!: Ser***SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSe 3175207 : TCGTAGAGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAG : 3175261 318 : nSerSerIleLysAsnSerLeuLeuIleIleMetLysArgAlaIleIleProIleG : 336 !..!|||! !|||!!.!!!||||||! |||||| !|||:!!:!:! ||||||| rGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleG 3175262 : CCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAG : 3175318 337 : luPheThrThrAlaHisIleIleSerLeuAsnLeuGluSerPhe : 350 |||||||| !||| !:!!.!! !!:!!||||||||||||||| luPheThrGlyAlaPheValPheProValAsnLeuGluSerPhe 3175319 : AATTCACCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTT : 3175362 vulgar: CbirOr196 298 350 . KQ414646.1 3175206 3175362 + 130 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3175207 3175362 130 + . gene_id 12 ; sequence CbirOr196 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3175207 3175362 . + . KQ414646.1 exonerate:protein2genome:local exon 3175207 3175362 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3175207 3175362 130 + . alignment_id 12 ; Query CbirOr196 ; Align 3175207 299 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr196 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 298 -> 357 Target range: 3153704 -> 3153881 299 : SerLysSerLeuGluLeuThrAspArgIlePheGlnThrAspTrpProMetLeuAs : 317 |||:!!|||||||||:!!..!||||||:!! .!.!:!:!! !!:!!! !:! SerGlnSerLeuGluIleValAspArgValThrAsnSerAsnIleThrValSerAs 3153705 : TCGCAGAGTCTCGAAATTGTGGACAGAGTAACGAACAGTAATATAACCGTGTCGGA : 3153759 318 : nSerSerIleLysAsnSerLeuLeuIleIleMetLysArgAlaIleIleProIleG : 336 !..!||| !|||!!.! !|||:!!:!:!!:!!:::!||||||:!: |||:!!| pGluSerSerLysLysIleLeuValLeuMetIleArgArgAlaLeuGluProValG 3153760 : CGAAAGCTCCAAGAAGATTCTGGTATTGATGATACGACGAGCTTTGGAGCCTGTCG : 3153816 337 : luPheThrThrAlaHisIleIleSerLeuAsnLeuGluSerPheValAlaLeuLeu : 354 |||||||| ! !!.!|||!!:|||:!!|||||||||||||||..!:!!:!! ! luPheThrGlyLeuArgIleMetSerValAsnLeuGluSerPheThrSerValSer 3153817 : AGTTCACCGGCCTTCGTATCATGTCTGTTAATCTCGAGTCATTCACGTCGGTTAGT : 3153870 355 : LysIleSer : 357 ! !|||||| MetIleSer 3153871 : ATGATATCG : 3153881 vulgar: CbirOr196 298 357 . KQ414646.1 3153704 3153881 + 119 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153705 3153881 119 + . gene_id 13 ; sequence CbirOr196 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153705 3153881 . + . KQ414646.1 exonerate:protein2genome:local exon 3153705 3153881 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153705 3153881 119 + . alignment_id 13 ; Query CbirOr196 ; Align 3153705 299 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr193 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 655 Query range: 0 -> 365 Target range: 3154921 -> 3156416 1 : MetArgAlaMetGlnPheProLeuLysIleLeuMetValAlaGlyCysTrpProPr : 19 |||!.! !:!!||| ! !|||:!!.!!! ! :!!..!||| !|||||||| MetHisLeuLeuGlnLysGlnLeuGlnPheCysAlaMetCysGlyLeuTrpProPr 3154922 : ATGCATCTACTGCAAAAACAACTGCAATTTTGCGCAATGTGCGGTCTCTGGCCACC : 3154976 20 : oValSerTrpSerSerLeuCysLysArgThrValTyrAsnGlyTyrThrIlePheV : 38 | !|||! :!! !!|||! !|||||| !!.!|||::!! !!:!:!! !:!. oProSerSerAlaProLeuPheLysArgPheAlaTyrSerValPheSerTrpTyrT 3154977 : GCCATCATCAGCTCCGCTGTTTAAAAGATTCGCCTACTCTGTATTCTCGTGGTACA : 3155033 39 : alThrLeuMetLeuValThrPheMetPheProGlnIleMetAspIleIleLeuAsn : 56 .! !:!!:!!:!! !! ! :!:||| !||||||||||||:!!|||:!!||| hrLeuIleLeuValTyrIleThrValPheSerGlnIleMetAspLeuIleValAsn 3155034 : CGTTAATACTGGTGTACATCACGGTTTTCAGCCAAATCATGGACCTAATCGTGAAC : 3155087 57 : ValAspAsnAlaAspAspPheThrGluThrPheTyrValMetLeuAlaThrValIl : 75 ||| !.! !|||!!:|||!:!!!:!.!||||||:!!:!:|||||| !!.!|| ValThrThrGlnAspGluPheSerAspAsnPheTyrIleLeuLeuAlaCysAlaIl 3155088 : GTGACGACTCAAGACGAGTTTAGCGACAATTTTTACATACTTCTGGCGTGTGCGAT : 3155144 76 : eAlaSerCysLysMetPheSerLeuLeuLeuAsnArgLysAsnIleLysIleLeuT : 94 |:!!! ! ||| |||:!!||| !!:!|||||||||:!! ! !:!!! eSerLeuGlnLysAlaGlnSerValLeuAsnSerArgLysAsnValHisArgMetI 3155145 : ATCCTTGCAGAAAGCACAGAGTGTGTTAAACAGTCGTAAGAATGTCCACCGTATGA : 3155201 95 : hrAspAlaLeuAlaGluLysProPheArgProLeuGluProAspGluIleGluIle : 112 !||| !||| !...:!!||||||!.!||| ! !!!:|||||||||||| leAspLeuLeuAsnSerGluProPheHisProGluCysLysGluGluIleGluIle 3155202 : TCGATCTTTTGAACAGCGAACCTTTTCATCCAGAATGTAAGGAGGAAATCGAGATA : 3155255 113 : ArgGlnLysValGluAspThrIle{Ar} >>>> Target Intron 1 >>>> : 121 |||...!:!:!!...!!: ! !{||} 119 bp ArgSerArgIleSerGluHisAla{Ar}++ + 3155256 : AGAAGTAGGATCTCCGAGCACGCC{AG}gt.........................a : 3155401 122 : {g}ThrAsnSerIleTrpTyrIlePheLeuValGluIleThrCysAlaCysIleA : 139 {|}! !!:!|||! !!::||| .!!||||||||| ||| ! !:!:: +{g}ArgSerSerThrTyrTyrAlaIleLeuValGluSerThrValMetThrLeuS 3155402 : g{A}AGAAGCTCAACCTATTACGCGATTCTGGTCGAATCGACGGTGATGACTTTGT : 3155455 140 : snLeuThrSerLeuLeuThrLysPheArgArgGlyAspLeuThrTyrArgGluTrp : 157 :!!!! !:!!||||||! ! ! !||| !||| !!|||||| ||| erPheGlyAlaLeuLeuLysProGluSerArg---ProLeuProTyrArgIleTrp 3155456 : CTTTCGGTGCACTGTTGAAACCAGAATCACGT---CCTTTACCGTATCGAATTTGG : 3155506 158 : ThrProTyrGluTyrSerSerValMetTyrTyrIleThr<->TyrPheArgGlnLe : 175 !|||! !.!.|||!!! !!:!!!!: !||| !:!! ||| !! !|||! LeuProCysAsnTyrThrProLeuIleThrTyrCysSerIleTyrThrLeuGlnCy 3155507 : CTACCTTGCAATTACACCCCGTTAATTACTTACTGTTCGATTTACACTCTCCAATG : 3155563 176 : uIleSerLeuSerThrAlaAlaIleValAsnValAlaCysAspCysIleIleCysG : 194 !:!::!!|||:!! !::!|||!!::!!:!!|||||||||||| !!:!:||||||| sValAlaLeuAlaLeuSerAlaMetMetHisValAlaCysAspSerLeuIleCysG 3155564 : TGTGGCACTCGCTCTAAGCGCTATGATGCACGTCGCCTGCGACAGTTTGATCTGCG : 3155620 195 : lyLeuLeuValHisIleCysCysGluIleAspIleLeuLysTyrArgLeuArgLys : 212 ||||||||:!!|||! !! ! !!:!!|||!!:|||||| ! !||||||!:: lyLeuLeuLeuHisThrTyrGlyGlnIleGluIleLeuGlyCysArgLeuLysThr 3155621 : GCCTGCTGTTACACACTTACGGCCAGATCGAGATCCTCGGTTGTCGTCTGAaaacg : 3155674 213 : SerLeuArgAsnArgThrAspPheArgGlu<->CysValArgGlnHisAspSerIl : 230 ...|||...::: ! !:!! ||||||||| ! :!!:!! !|| IleLysGluAsnGluSerLysThrSerLysLeuCysValArgTyrAsnAsnLeuIl 3155675 : ataaaagaaaacgagagtAAGACGTCCAAGTTGTGCGTTCGTTACAACAACCTTAT : 3155731 231 : eTyr{Ly} >>>> Target Intron 2 >>>> {s}PheAlaTyrThrIleA : 238 ||||{::} 69 bp {!}|||.!! !! !|||| eTyr{Ar}++ ++{g}PheThrAlaMetIleA 3155732 : CTAT{CG}gt.........................ag{A}TTCACCGCTATGATAA : 3155824 239 : snGluAsnPheArgIleIleLeuAlaIleGlnPheAlaValSerThrLeuValVal : 256 |||||.!.|||..!!!: :!! !! !|||||||||||||||||||||!.!:!! snGluGlnPheGluMetAlaIlePheThrGlnPheAlaValSerThrLeuAlaIle 3155825 : ACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGTGAGTACGCTGGCGATA : 3155878 257 : CysSerAsnMetTyrGlnIleAlaArgThrSerLeuSer<->AlaGluTyrIlePr : 274 |||! !|||:!:|||! !:!!.!! !!:!!..!:!!!!! !..!|||:!: CysPheAsnLeuTyrLeuLeuThrGlySerAspValThrProIleArgTyrValGl 3155879 : TGCTTCAATCTTTACCTATTAACAGGATCAGATGTGACGCCGATTAGGTATGTGGA : 3155935 275 : oLeuMetLeuTyrThrSerCysMetPheThrGlnIleLeuIleTyrCysTrpTyrG : 293 !:!!!!::!!|||!:!|||||||||.!!|||||||||!!!|||||||||||||||| uIleIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysTrpTyrG 3155936 : AATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTGGTACG : 3155992 294 : lyAsnGluValLysLeuLys >>>> Target Intron 3 >>>> SerValG : 302 |||||||||||||||||||| 73 bp |||:!!: lyAsnGluValLysLeuLys++ ++SerLeuG 3155993 : GGAACGAAGTTAAGCTGAAGgt.........................agAGCCTCG : 3156092 303 : lnLeuAlaAsnGluIlePheGluMetAspTrpIleThrValAspLysGluValLys : 320 !!:!!:!!||| !||||||.!.:!:||||||! ! !! !!||||||! ..!||| luIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAlaThrLys 3156093 : AGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGCTACAAAA : 3156146 321 : GluGlyLeuMetMetIleMetAsnArgSerLeuValProIleGluPheSerSerAl : 339 ..!..!:!!:!:! !!:|||! |||:!!! ! !|||||||||.!!! !|||!. ArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleIleSerVa 3156147 : CGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCATCAGCGT : 3156203 340 : aHisIlePheThrValAsnLeuAspSerPheValLys >>>> Target Intro : 352 !!.!:!:.!!:!!||||||||||||||||||||| 133 bp lArgValLeuSerValAsnLeuAspSerPheValAla++ 3156204 : TCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt................. : 3156244 353 : n 4 >>>> IleLeuLysAlaSerTyrSerAlaTyrSerIleLeuGlnGln : 365 :!:||||||.!!|||||||||||||||!:!:!!||||||!:: ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGlnArg 3156245 : ........agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAACGC : 3156416 vulgar: CbirOr193 0 365 . KQ414646.1 3154921 3156416 + 655 M 120 360 S 0 2 5 0 2 I 0 115 3 0 2 S 1 1 M 28 84 G 1 0 M 20 60 G 0 3 M 52 156 G 0 3 M 9 27 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 37 111 G 0 3 M 30 90 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 129 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3154922 3156416 655 + . gene_id 1 ; sequence CbirOr193 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3154922 3155283 . + . KQ414646.1 exonerate:protein2genome:local exon 3154922 3155283 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3155284 3155285 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3155284 3155402 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3155401 3155402 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3155403 3155738 . + . KQ414646.1 exonerate:protein2genome:local exon 3155403 3155738 . + . insertions 6 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3155739 3155740 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3155739 3155807 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3155806 3155807 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3155808 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155808 3156012 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156013 3156014 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156013 3156085 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3156084 3156085 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156086 3156241 . + . KQ414646.1 exonerate:protein2genome:local exon 3156086 3156241 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156242 3156243 . + . intron_id 4 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156242 3156374 . + . intron_id 4 KQ414646.1 exonerate:protein2genome:local splice3 3156373 3156374 . + . intron_id 3 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156375 3156416 . + . KQ414646.1 exonerate:protein2genome:local exon 3156375 3156416 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3154922 3156416 655 + . alignment_id 1 ; Query CbirOr193 ; Align 3154922 1 360 ; Align 3155404 122 84 ; Align 3155488 151 60 ; Align 3155551 171 156 ; Align 3155710 223 27 ; Align 3155809 233 111 ; Align 3155923 270 90 ; Align 3156086 300 156 ; Align 3156375 352 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr193 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 565 Query range: 0 -> 352 Target range: 3159620 -> 3161160 1 : MetArgAlaMetGlnPheProLeuLysIleLeuMetValAlaGlyCysTrpProPr : 19 |||!.!.!!:!!|||!!. !!||||||! !|||! !:!!..!|||! ! !|| MetHisThrLeuGlnLeuSerLeuLysThrLeuThrIleCysGlyTyrIleArgPr 3159621 : ATGCACACGTTGCAATTGTCGTTGAAAACTTTGACGATTTGCGGCTACATAAGGCC : 3159675 20 : oValSerTrpSerSerLeuCysLysArgThrValTyrAsnGlyTyrThrIlePheV : 38 |..!||||||!.!|||! ! ! !!:! !:!!||||||! !:!!|||:!! !| oThrSerTrpLysSerProGlyLeuLysLeuLeuTyrAsnValHisThrValThrV 3159676 : AACATCGTGGAAGTCACCGGGGCTAAAGCTTCTCTATAACGTACACACGGTTACTG : 3159732 39 : alThrLeuMetLeuValThrPheMetPheProGlnIleMetAspIleIleLeuAsn : 56 ||..!:!!:!:||| !||||||.!. !! !!||||||:!:|||||||||...||| alValValValLeuSerThrPhePheValAlaGlnIleLeuAspIleIlePheAsn 3159733 : TAGTGGTAGTTCTTAGCACGTTTTTCGTCGCCCAGATATTggacattattttcaac : 3159786 57 : ValAspAsnAlaAspAspPheThrGluThrPheTyrValMetLeuAlaThrValIl : 75 |||!!:||| !|||!!:|||!:!!!:!.!|||! !:!!! !! !..!..!:!!! ValGluAsnGlnAspGluPheSerAspAsnPheCysIleThrCysCysValMetAs 3159787 : gtgGAGAATCAAGACGAGTTTAGCGACAATTTCTGCATAACGTGCTGCGTGATGAA : 3159843 76 : eAlaSerCysLysMetPheSerLeuLeuLeuAsnArgLysAsnIleLysIleLeuT : 94 !::! ! ! |||:!!!:!|||||||||:!!...|||:!!! |||:!!! !|||! nSerLeuGlyLysLeuTyrSerLeuLeuIleGlyArgGluMetIleGlnAsnLeuI 3159844 : CAGCCTTGGAAAGTTGTACAGCTTGCTGATAGGACGAGAAATGATCCAAAATTTAA : 3159900 95 : hrAspAlaLeuAlaGluLysProPheArgProLeuGluProAspGluIleGluIle : 112 !|||:!!||| !... ! |||.!!|||||||||!!: !! |||! !|||||| leAspSerLeuGlnSerAspProLeuArgProLeuAspGluValGluAsnGluIle 3159901 : TAGACTCGCTACAAAGTGACCCTCTTAGGCCGTTGGACGAAGTGGAGAATGAAATT : 3159954 113 : ArgGlnLysValGluAspThrIle{Ar} >>>> Target Intron 1 >>>> : 121 ||| !!:! !||| ! ||||||{..} 73 bp ArgLeuArgHisGluLysThrIle{Gl}++ + 3159955 : CGATTGAGACACGAGAAGACAATC{GA}gt.........................a : 3160054 122 : {g}ThrAsnSerIleTrpTyrIlePheLeuValGluIleThrCysAlaCysIleA : 139 {!}! ! !|||!!: |||! !!! !..!! !:!:!:!....!! !!:!! +{u}LysLeuSerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValT 3160055 : g{A}AAGCTCTCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTAT : 3160108 140 : snLeuThrSerLeuLeuThrLysPheArgArgGlyAspLeuThrTyrArgGluTrp : 157 :!! !||| !:!!||| !||||||! ! !!!!:||| !! !|||! !||| rpMetLeuSerAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrp 3160109 : GGATGTTGTCGGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGG : 3160162 158 : ThrProTyrGluTyrSerSerValMet<-><->TyrTyrIleThrTyrPheArgGl : 174 !|||!:!!!:|||!!!:!!..!:!! !:! !:!!|||||| ! !|| LeuProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGl 3160163 : TTACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCA : 3160219 175 : nLeuIleSerLeuSerThrAlaAlaIleValAsnValAlaCysAspCysIleIleC : 193 |!!!:!!!!!|||! ! ! !.!!! !!.!! !:!!!.! !||| !:!!.!! nPheValThrLeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheS 3160220 : GTTTGTAACTCTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCA : 3160276 194 : ysGlyLeuLeuValHisIleCysCysGluIleAspIleLeuLysTyrArgLeuArg : 211 !!|||||||||:!!||||||! !|||:!!.!!!!:||||||:!!:!!||||||!:! erGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLys 3160277 : GCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAG : 3160330 212 : LysSerLeuArgAsnArgThr<->AspPheArgGluCysValArgGlnHisAspSe : 229 !..! ! !! !:!!||| ! ..! !:!:!!|||!.! !!!.||| !! ! SerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrAr 3160331 : AGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCG : 3160387 230 : rIleTyr{Ly} >>>> Target Intron 2 >>>> {s}PheAlaTyrThrI : 237 !||||||{||} 328 bp {|}|||||| ! ! !| gIleTyr{Ly}++ ++{s}PheAlaGluIleI 3160388 : CATATAC{AA}gt.........................ag{A}TTCGCTGAAATTA : 3160739 238 : leAsnGluAsnPheArgIleIleLeuAlaIleGlnPheAlaValSerThrLeuVal : 255 |||||! !!!.|||!!!|||! :!!|||! |||||| !|||!!!|||:!!..! leAsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThr 3160740 : TAAACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACA : 3160793 256 : ValCysSerAsnMetTyrGlnIleAlaArgThrSerLeuSerAlaGluTyrIlePr : 274 :!!|||! !|||:!:!:!!:!:!:.!!!:!|||!.!:!!! !:!!:!! !:!! ! MetCysPheAsnLeuPheArgLeuThrGlnThrLysValTyrSerGlnValLeuAl 3160794 : ATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGGTGTATTCGCAAGTTTTAGC : 3160850 275 : oLeuMetLeuTyrThrSerCysMetPheThrGlnIleLeuIleTyrCysTrpTyrG : 293 !|||!!:! !!:!! ! ! !!:!!|||.!!||||||!!! !! !|||||||||| aLeuIleProPheMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyrG 3160851 : ATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATG : 3160907 294 : lyAsnGluValLysLeuLys >>>> Target Intron 3 >>>> SerValG : 302 ||||||||..!|||:!!||| 74 bp |||:!!: lyAsnGluThrLysValLys++ ++SerLeuG 3160908 : GAAACGAGACCAAAGTGAAGgt.........................agAGCCTTG : 3161008 303 : lnLeuAlaAsnGluIlePheGluMetAspTrpIleThrValAspLysGluValLys : 320 !!:!!..!:!! !:!!||||||! :!!|||! .!!:!!..!:!!.....!||| luIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSerThrLys 3161009 : AAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAGCACCAAA : 3161062 321 : GluGlyLeuMetMetIleMetAsnArgSerLeuValProIleGluPheSerSerAl : 339 :!! !|||:!!! !|||||| ||||||||| !||||||||||||!!!.!!|| LysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheThrGlyAl 3161063 : AAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCACCGGCGC : 3161119 340 : aHisIlePheThrValAsnLeuAspSerPheValLysIle : 352 | !:!!||| !!|||||||||!!:|||||| !!..:!! aPheValPheProValAsnLeuGluSerPheLysSerVal 3161120 : TTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAAAGTGTT : 3161160 vulgar: CbirOr193 0 352 . KQ414646.1 3159620 3161160 + 565 M 120 360 S 0 2 5 0 2 I 0 69 3 0 2 S 1 1 M 45 135 G 0 6 M 52 156 G 0 3 M 13 39 S 0 2 5 0 2 I 0 324 3 0 2 S 1 1 M 67 201 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3159621 3161160 565 + . gene_id 2 ; sequence CbirOr193 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3159621 3159982 . + . KQ414646.1 exonerate:protein2genome:local exon 3159621 3159982 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3159983 3159984 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3159983 3160055 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3160054 3160055 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3160056 3160397 . + . KQ414646.1 exonerate:protein2genome:local exon 3160056 3160397 . + . insertions 9 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3160398 3160399 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3160398 3160725 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3160724 3160725 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3160726 3160927 . + . KQ414646.1 exonerate:protein2genome:local exon 3160726 3160927 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3160928 3160929 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3160928 3161001 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3161000 3161001 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3161002 3161160 . + . KQ414646.1 exonerate:protein2genome:local exon 3161002 3161160 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3159621 3161160 565 + . alignment_id 2 ; Query CbirOr193 ; Align 3159621 1 360 ; Align 3160057 122 135 ; Align 3160198 167 156 ; Align 3160357 219 39 ; Align 3160727 233 201 ; Align 3161002 300 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr193 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 511 Query range: 120 -> 352 Target range: 3150032 -> 3151028 121 : ArgThrAsnSerIleTrpTyrIlePheLeuValGluIleThrCysAlaCysIleAs : 139 |||:!! !!!|||!::|||! .!!|||||||||:!!||| ! !|||!!:! ArgSerValThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCysMetIl 3150033 : AGGTCGGTGACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTGTATGAT : 3150087 140 : nLeuThrSerLeuLeuThrLysPheArgArgGlyAspLeuThrTyrArgGluTrpT : 158 !|||:!!||||||||| ! ! |||!.!..! !!!!:|||.!!||||||! ||| eLeuSerSerLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgAlaTrpL 3150088 : CCTCTCTTCGTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAGCCTGGC : 3150144 159 : hrProTyrGluTyrSer<->SerValMetTyrTyrIleThrTyrPheArgGlnLeu : 175 !|||!:!!!:|||||| !!..! |||||||||.!!||| !!!.!|||:!! euProPheAspTyrSerLeuProThrTyrTyrTyrIleAlaTyrValHisGlnIle 3150145 : TGCCCTTCGATTACTCTCTGCCAACTTACTATTACATCGCGTACGTTCATCAGATC : 3150198 176 : IleSerLeuSerThrAlaAlaIleValAsnValAlaCysAspCysIleIleCysGl : 194 :!!:!!|||! ! !.!!:!!:!! !||||||||||||||| ||||||||||| ValAlaLeuIleGlyThrSerLeuSerAsnValAlaCysAspValIleIleCysGl 3150199 : GTCGCGCTGATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCATCTGCGG : 3150255 195 : yLeuLeuValHisIleCysCysGluIleAspIleLeuLysTyrArgLeuArgLys< : 213 ||||||||||||| !||| !!:!! !!:|||||||||:!!|||:!!!:!:!! yLeuLeuValHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMetLysGluM 3150256 : GTTGCTCGTTCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATGAAGGAGA : 3150312 214 : ->SerLeuArgAsnArgThrAspPheArgGluCysValArgGlnHisAspSerIle : 230 !!!! !..!.!.||| !!:!!.!! !!:!! !|||||| ||||||! !:!! etThrGlnGluGlnArgProAsnIleGlyLysIleValArgPheHisAspTyrLeu 3150313 : TGACGCAGGAACAGAGGCCGAATATCGGGAAAATCGTTCGTTTCCACGATTATCTT : 3150366 231 : Tyr{Ly} >>>> Target Intron 1 >>>> {s}PheAlaTyrThrIleAs : 238 |||{ } 230 bp {!}!:!!.!!:!|||!!:.! Tyr{Gl}++ ++{y}TyrValPheThrMetGl 3150367 : TAC{GG}gt.........................ag{G}TACGTTTTCACGATGCA : 3150620 239 : nGluAsnPheArgIleIleLeuAlaIleGlnPheAlaValSerThrLeuValValC : 257 .|||!!.|||||| |||:!!!.!:!:|||.!! ! !|||||||||||||||| nGluLysPheArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuValValC 3150621 : AGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGGTAGTGT : 3150677 258 : ysSerAsnMetTyrGlnIleAlaArgThr<->SerLeuSerAlaGluTyrIlePro : 274 ||! !! !:!!|||:!!:!:|||!.!||| !!:!!|||:!!:!!|||:!:! ! ysPheIleLeuTyrGluLeuAlaAsnThrProProIleSerSerLysTyrLeuGln 3150678 : GTTTCATCCTGTACGAATTGGCGAACACGCCTCCAATCAGCTCCAAGTACCTGCAA : 3150731 275 : LeuMetLeuTyrThrSerCysMetPheThrGlnIleLeuIleTyrCysTrpTyrGl : 293 !!!:!:|||||| !:!!||||||.!.|||||||||!!!.!!|||||||||||||| PheValLeuTyrLeuAlaCysMetMetThrGlnIlePhePheTyrCysTrpTyrGl 3150732 : TTTGTCCTGTACCTGGCCTGTATGATGACGCAGATCTTCTTTTACTGCTGGTACGG : 3150788 294 : yAsnGluValLysLeuLys >>>> Target Intron 2 >>>> SerValGl : 302 |.!.:!!:!!||||||||| 61 bp ||||||:! yGluGlnLeuLysLeuLys++ ++SerValGl 3150789 : CGAGCAGTTGAAACTGAAGgt.........................agAGCGTCGA : 3150876 303 : nLeuAlaAsnGluIlePheGluMetAspTrpIleThrValAspLysGluValLysG : 321 !:!!!.!..! !||||||||||||||||||||| !!:!!.!.!!.! :!!|||: uIleValArgThrIlePheGluMetAspTrpIleProLeuGlnAsnGlyIleLysL 3150877 : GATTGTGCGCACGATCTTCGAAATGGATTGGATACCTCTCCAGAACGGTATCAAGA : 3150933 322 : luGlyLeuMetMetIleMetAsnArgSerLeuValProIleGluPheSerSerAla : 339 !!! !|||!!::!::!: !!..|||:!!:!!:!!|||||||||!!.!!!!!!||| ysAspLeuIleValValAlaArgArgAlaMetIleProIleGluLeuThrCysAla 3150934 : AGGATTTGATAGTCGTGGCGAGAAGAGCGATGATCCCGATCGAGTTGACCTGCGCG : 3150987 340 : HisIlePheThrValAsnLeuAspSerPheValLysIle : 352 :!!!!:||||||:!!:!!|||:!!!!!||||||!..:!! TyrMetPheThrMetAspLeuAsnThrPheValSerVal 3150988 : TACATGTTCACCATGGACTTGAACACCTTCGTCAGCGTC : 3151028 vulgar: CbirOr193 120 352 . KQ414646.1 3150032 3151028 + 511 M 43 129 G 0 3 M 49 147 G 0 3 M 19 57 S 0 2 5 0 2 I 0 226 3 0 2 S 1 1 M 34 102 G 0 3 M 33 99 5 0 2 I 0 57 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150033 3151028 511 + . gene_id 3 ; sequence CbirOr193 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3150033 3150373 . + . KQ414646.1 exonerate:protein2genome:local exon 3150033 3150373 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150374 3150375 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150374 3150603 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150602 3150603 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150604 3150808 . + . KQ414646.1 exonerate:protein2genome:local exon 3150604 3150808 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150809 3150810 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150809 3150869 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3150868 3150869 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150870 3151028 . + . KQ414646.1 exonerate:protein2genome:local exon 3150870 3151028 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150033 3151028 511 + . alignment_id 3 ; Query CbirOr193 ; Align 3150033 121 129 ; Align 3150165 164 147 ; Align 3150315 213 57 ; Align 3150605 233 102 ; Align 3150710 267 99 ; Align 3150870 300 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr193 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 334 Query range: 136 -> 352 Target range: 3174311 -> 3175371 137 : CysIleAsnLeuThrSerLeuLeuThrLysPheArgArgGlyAspLeuThrTyrAr : 155 |||||| !!!:!!|||:!!!!!||| |||!:!! ! !!!!:||| !! !|| CysIleTrpPheSerSerIlePheThrAlaPheLysIleArgGluLeuProLeuAr 3174312 : tgtatatggTTCTCGTCGATCTTCACGGCTTTTAAGATCAGAGAGTTACCCCTTCG : 3174366 156 : gGluTrpThr-ProTyrGluTyrSerSerValMet<-><->TyrTyrIleThrTyr : 171 |! !||| !#|||!:!!!:|||!!!:!!..!:!! !:! !:!!|||||| gGlyTrpLeu#ProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyr 3174367 : AGGATGGTTAACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTAC : 3174421 172 : PheArgGlnLeuIleSerLeuSerThrAlaAlaIleValAsnValAlaCysAspCy : 190 ! !|||!!!:!!!!!|||! ! ! !.!! !!.!! !:!!!.!! !||| AlaTyrGlnPheValThrLeuIlePheLeuThrSerAlaIleIleGlySerAspAs 3174422 : GCTTATCAGTTTGTAACTCTGATATTCCTTACTTCTGCTATTATCGGTTCTGACAA : 3174478 191 : sIleIleCysGlyLeuLeuValHisIleCysCysGluIleAspIleLeuLysTyrA : 209 !:!!.!! !!|||||||||:!!||||||! !|||:!!.!!!!:||||||:!!:!!| nLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisA 3174479 : TCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATC : 3174535 210 : rgLeuArgLysSerLeuArgAsnArgThr<->AspPheArgGluCysValArgGln : 226 |||||!:!!..! ! !! !:!!||| ! ..! !:!:!!|||!.! !!!. rgLeuLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHis 3174536 : GTCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCAT : 3174589 227 : HisAspSerIleTyr{Ly} >>>> Target Intron 1 >>>> {s}PheAl : 234 ||| !! !!||||||{||} 328 bp {|}||||| HisTyrArgIleTyr{Ly}++ ++{s}PheAl 3174590 : CATTATCGCATATAC{AA}gt.........................ag{A}TTCGC : 3174941 235 : aTyrThrIleAsnGluAsnPheArgIleIleLeuAlaIleGlnPheAlaValSerT : 253 | ! ! !||||||! !!!.|||!!!|||! :!!|||! |||||| !|||!!!| aGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValThrT 3174942 : TGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCA : 3174998 254 : hrLeuValValCysSerAsnMetTyrGlnIleAlaArgThrSerLeuSerAlaGlu : 271 ||:!!..!:!!|||! !|||:!:!:!!:!:!:.!!!:!|||!.!:!!! !:!!:!! hrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysValTyrSerGln 3174999 : CTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGGTGTATTCGCAA : 3175052 272 : TyrIleProLeuMetLeuTyrThrSerCysMetPheThrGlnIleLeuIleTyrCy : 290 !:!! !!|||!!:! !!:!! ! ! !!:!!|||.!!||||||!!! !! !|| ValLeuAlaLeuIleProPheMetValSerValPheAlaGlnIlePheTyrCysCy 3175053 : GTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTG : 3175109 291 : sTrpTyrGlyAsnGluValLysLeuLys >>>> Target Intron 2 >>>> : 300 ||||||||||||||||..!|||:!!||| 74 bp sTrpTyrGlyAsnGluThrLysValLys++ + 3175110 : CTGGTATGGAAACGAGACCAAAGTGAAGgt.........................a : 3175211 301 : SerValGlnLeuAlaAsnGluIlePheGluMetAspTrpIleThrValAspLysG : 318 |||:!!:!!:!!..!:!! !:!!||||||! :!!|||! .!!:!!..!:!!. +SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnS 3175212 : gAGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGA : 3175267 319 : luValLysGluGlyLeuMetMetIleMetAsnArgSerLeuValProIleGluPhe : 336 ....!|||:!! !|||:!!! !|||||| ||||||||| !|||||||||||| erThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPhe 3175268 : GCACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTC : 3175321 337 : SerSerAlaHisIlePheThrValAsnLeuAspSerPheValLysIle : 352 !!!.!!||| !:!!||| !!|||||||||!!:|||||| !!..:!! ThrGlyAlaPheValPheProValAsnLeuGluSerPheLysSerVal 3175322 : ACCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAAAGTGTT : 3175371 vulgar: CbirOr193 136 352 . KQ414646.1 3174311 3175371 + 334 M 22 66 F 0 1 M 8 24 G 0 6 M 52 156 G 0 3 M 13 39 S 0 2 5 0 2 I 0 324 3 0 2 S 1 1 M 67 201 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174312 3175371 334 + . gene_id 4 ; sequence CbirOr193 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3174312 3174608 . + . KQ414646.1 exonerate:protein2genome:local exon 3174312 3174608 . + . insertions 9 ; deletions 0 ; frameshifts 1 KQ414646.1 exonerate:protein2genome:local splice5 3174609 3174610 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3174609 3174936 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3174935 3174936 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3174937 3175138 . + . KQ414646.1 exonerate:protein2genome:local exon 3174937 3175138 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3175139 3175140 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3175139 3175212 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3175211 3175212 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3175213 3175371 . + . KQ414646.1 exonerate:protein2genome:local exon 3175213 3175371 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3174312 3175371 334 + . alignment_id 4 ; Query CbirOr193 ; Align 3174312 137 66 ; Align 3174379 159 24 ; Align 3174409 167 156 ; Align 3174568 219 39 ; Align 3174938 233 201 ; Align 3175213 300 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr193 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 271 Query range: 122 -> 352 Target range: 3153117 -> 3153869 123 : AsnSerIleTrpTyrIlePheLeuValGluIleThrCysAlaCysIleAsnLeuTh : 141 |||:!!! |||! !!:!!!!:!!!!:||| ! !.! !:!! :!!|| AsnAlaLysAlaTyrThrTyrPheLeuAspIleLeuValValValLeuTrpIleTh 3153118 : AACGCTAAGGCTTACACATATTTCCTGGACATCTTGGTAGTCGTTTTATGGATAAC : 3153172 142 : rSerLeuLeuThrLysPheArgArgGlyAspLeuThrTyrArgGluTrpThrProT : 160 ||||! !!!!||| ! !:!|||||| ... :::||| ||| !|||| rSerTyrPheThrAspTyrArgArgArgLysPheLysPheArgValTrpLeuProT 3153173 : ATCGTACTTCACGGACTACAGGcgcagaaaattcaaatttcgcgtCTGGTTACCTT : 3153229 161 : yrGluTyrSerSer<->ValMetTyrTyrIleThrTyrPheArgGlnLeuIleSer : 177 ||!!: !!!!!!! !:!:!:! !:!:! !|||! !!:!|||:!!:!!!!! yrAspThrThrThrGlnProValPheThrLeuIleTyrCysGlnGlnIleValCys 3153230 : ACGACACTACTACACAACCTGTCTTCACTCTGATCTACTGTCAACAGATCGTCTGC : 3153283 178 : LeuSerThrAlaAlaIleValAsnValAlaCysAspCysIleIleCysGlyLeuLe : 196 !!!! !::!!.!! !:!!|||||| !|||||||||:!:.!! !!||||||:! ThrTrpTyrSerValAsnIleAsnValIleCysAspCysLeuPheSerGlyLeuMe 3153284 : ACGTGGTACAGCGTGAATATTAACGTCATTTGCGACTGCCTGTTCAGCGGCCTGAT : 3153340 197 : uValHisIleCysCysGluIleAspIleLeuLysTyrArgLeuArgLysSer<->L : 214 !:!!!!.||||||! :!! ! :!!||| !! !! !|||!!.!!! | tIleGlnIleCysSerIleLeuArgLysMetLysProThrArgArgAsnCysValL 3153341 : GATACAGATTTGCTCAATCTTACGGAAGATGAAACCTACTCGGCGAAACTGTGTGC : 3153397 215 : euArgAsnArgThrAspPheArgGluCysValArgGlnHisAspSerIleTyrLys : 232 || !!.!! !! ! !:!! !... !||||||... ... ||| euValThrIleIleArgTyrThrSerGlnSerArgGlnGluIleLysArgTyrVal 3153398 : TCGTCACCATAATCAGATATACAAGCCAGTCTCGacaagaaattaaacgatacgTT : 3153451 233 : <->PheAlaTyrThrIleAsnGluAsnPheArgIleIleLeuAlaIleGlnPheAl : 250 !!.||| ! ! !:!:||||||!!..!! !!! !:!!! !::!||||||||||| ***LeuAlaGlnIleValAsnGluLysLeuGlyAsnValSerSerIleGlnPheAl 3153452 : TGATTGGCGCAAATAGTGAACGAGAAGCTTGGAAATGTCTCGAGTATACAGTTCGC : 3153508 251 : aValSerThrLeuValValCysSerAsnMetTyrGlnIleAlaArgThrSerLeuS : 269 |:!!|||||| !!.!:!!|||! !|||:!:|||!:!!!::!! !! !..!|||. aIleSerThrGlyAlaIleCysPheAsnLeuTyrArgMetSerValIleGluLeuG 3153509 : GATAAGCACAGGAGCGATATGCTTCAATCTCTATCGAATGTCGGTGATAGAACTCG : 3153565 270 : erAlaGluTyrIleProLeuMetLeuTyrThrSerCysMetPheThrGlnIleLeu : 287 !! !!:!!!:!:!: ! !:!: ! !||| !|||:!:.!!.!!||||||!!! lyProLysPheValGluAlaLeuThrIleThrValCysLeuLeuAlaGlnIlePhe 3153566 : GTCCAAAGTTTGTGGAAGCGTTAACTATCACAGTATGCTTACTCGCGCAGATATTT : 3153619 288 : IleTyrCysTrpTyrGlyAsnGluValLysLeu{L} >>>> Target Intron : 299 !||||||||||||||||||::: ... {:} 53 bp TyrTyrCysTrpTyrGlyAsnAspArgAsnTyr{G}-+ 3153620 : TACTATTGTTGGTAcggtaacgatagaaattac{g}at.................. : 3153658 300 : 1 >>>> {ys}SerValGlnLeuAlaAsnGluIlePheGluMetAspTrpIleT : 314 {!!}|||:!!:!!:!!!.!:!!..!:!! .!.! :!! ! !. --{lu}SerLeuGluIleValAspArgValThrAsnSerAsnIleThrV 3153659 : .......gc{AG}AGTCTCGAAATTGTGGACAGAGTAACGAACAGTAATATAACCG : 3153753 315 : hrValAspLysGluValLysGluGlyLeuMetMetIleMetAsnArgSerLeuVal : 332 .! !|||:!!... !|||:!! !|||:!::!!!!:!!:...|||:!!|||! ! alSerAspGluSerSerLysLysIleLeuValLeuMetIleArgArgAlaLeuGlu 3153754 : TGTCGGACGAAAGCTCCAAGAAGATTCTGGTATTGATGATACGACGAGCTTTGGAG : 3153807 333 : ProIleGluPheSerSerAlaHisIlePheThrValAsnLeuAspSerPheValLy : 351 |||:!!||||||!!!.!! !!.!|||.!.:!!|||||||||!!:||||||..!.. ProValGluPheThrGlyLeuArgIleMetSerValAsnLeuGluSerPheThrSe 3153808 : CCTGTCGAGTTCACCGGCCTTCGTATCATGTCTGTTAATCTCGAGTCATTCACGTC : 3153864 352 : sIle : 352 !:!! rVal 3153865 : GGTT : 3153869 vulgar: CbirOr193 122 352 . KQ414646.1 3153117 3153869 + 271 M 42 126 G 0 3 M 49 147 G 0 3 M 19 57 G 0 3 M 66 198 S 0 1 5 0 2 I 0 49 3 0 2 S 1 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153118 3153869 271 + . gene_id 5 ; sequence CbirOr193 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3153118 3153655 . + . KQ414646.1 exonerate:protein2genome:local exon 3153118 3153655 . + . insertions 9 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3153656 3153657 . + . intron_id 1 ; splice_site "AT" KQ414646.1 exonerate:protein2genome:local intron 3153656 3153708 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3153707 3153708 . + . intron_id 0 ; splice_site "GC" KQ414646.1 exonerate:protein2genome:local cds 3153709 3153869 . + . KQ414646.1 exonerate:protein2genome:local exon 3153709 3153869 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153118 3153869 271 + . alignment_id 5 ; Query CbirOr193 ; Align 3153118 123 126 ; Align 3153247 165 147 ; Align 3153397 214 57 ; Align 3153457 233 198 ; Align 3153711 300 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr193 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 258 Query range: 231 -> 352 Target range: 3158452 -> 3158895 232 : LysPheAlaTyrThrIleAsnGluAsnPheArgIleIleLeuAlaIleGlnPheAl : 250 !:!|||:!! ! ! !:!:||||||.!.|||!:!:!:|||||| ! !||||||.. ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3158453 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3158507 251 : aValSerThrLeuValValCysSerAsnMetTyrGlnIleAlaArgThrSerLeuS : 269 !:!!|||! !! !|||:!!|||! !|||:!:|||!:!!!:.!!!:!! !!.!:!!. sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetA 3158508 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGG : 3158564 270 : erAlaGluTyrIleProLeuMetLeuTyrThrSerCysMetPheThrGlnIleLeu : 287 .....::::::::: ::::!:||||||:!!! !|||! .!!|||||||||!!! spThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePhe 3158565 : AcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTT : 3158618 288 : IleTyrCysTrpTyrGlyAsnGluValLysLeu{L} >>>> Target Intron : 299 !||||||||||||||||||||||||||| {:} 83 bp TyrTyrCysTrpTyrGlyAsnGluValLys---{G}-+ 3158619 : TACTATTGTTGGTACGGCAACGAAGTGAAA---{G}at.................. : 3158654 300 : 1 >>>> {ys}SerValGlnLeuAlaAsnGluIlePheGluMetAspTrpIleT : 314 {!!}|||:!!|||||| !! !! !||||||.!.! ||||||! : --{lu}SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrS 3158655 : .......gt{AG}AGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGT : 3158779 315 : hrValAspLysGluValLysGluGlyLeuMetMetIleMetAsnArgSerLeuVal : 332 !!:!!:!!!!..!.|||! ..!!.!|||:!:!!:!!:|||!..|||:!!:!! ! erLeuAsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaValArg 3158780 : CTTTGAACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGG : 3158833 333 : ProIleGluPheSerSerAlaHisIlePheThrValAsnLeuAspSerPheValLy : 351 ||||||||||||!!!||| !|||:!! !!:!!|||||||||!!:||||||:!! ProIleGluPheThrSerIleHisValValSerValAsnLeuGluSerPheMetAl 3158834 : CCAATAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGC : 3158890 352 : sIle : 352 !:!! aVal 3158891 : AGTC : 3158895 vulgar: CbirOr193 231 352 . KQ414646.1 3158452 3158895 + 258 M 66 198 G 1 0 S 0 1 5 0 2 I 0 79 3 0 2 S 1 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158453 3158895 258 + . gene_id 6 ; sequence CbirOr193 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3158453 3158651 . + . KQ414646.1 exonerate:protein2genome:local exon 3158453 3158651 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3158652 3158653 . + . intron_id 1 ; splice_site "AT" KQ414646.1 exonerate:protein2genome:local intron 3158652 3158734 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3158733 3158734 . + . intron_id 0 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local cds 3158735 3158895 . + . KQ414646.1 exonerate:protein2genome:local exon 3158735 3158895 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3158453 3158895 258 + . alignment_id 6 ; Query CbirOr193 ; Align 3158453 232 198 ; Align 3158737 300 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr193 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 185 Query range: 231 -> 299 Target range: 3164980 -> 3165184 232 : LysPheAlaTyrThrIleAsnGluAsnPheArgIleIleLeuAlaIleGlnPheAl : 250 !:!|||:!! ! ! !:!:||||||.!.|||!:!:!:|||||| ! !||||||.. ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3164981 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3165035 251 : aValSerThrLeuValValCysSerAsnMetTyrGlnIleAlaArgThrSerLeuS : 269 !:!!|||! !! !|||:!!|||! !|||:!:|||!:!!!:.!!!:!! !!.!:!!. sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetA 3165036 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGG : 3165092 270 : erAlaGluTyrIleProLeuMetLeuTyrThrSerCysMetPheThrGlnIleLeu : 287 .....::::::::: ::::!:||||||:!!! !|||! .!!|||||||||!!! spThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePhe 3165093 : AcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTT : 3165146 288 : IleTyrCysTrpTyrGlyAsnGluValLysLeuLys : 299 !|||||||||||||||||||||||||||! !||| TyrTyrCysTrpTyrGlyAsnGluValLysHisLys 3165147 : TACTATTGCTGGTACGGCAACGAAGTGAAACATAAG : 3165184 vulgar: CbirOr193 231 299 . KQ414646.1 3164980 3165184 + 185 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164981 3165184 185 + . gene_id 7 ; sequence CbirOr193 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164981 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164981 3165184 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164981 3165184 185 + . alignment_id 7 ; Query CbirOr193 ; Align 3164981 232 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr193 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 9 -> 122 Target range: 3179640 -> 3179976 10 : IleLeuMetValAlaGlyCysTrpProProValSerTrpSerSerLeuCysLysAr : 28 ...||| :!!!.!||||||||| !|||:!!|||||||||||| !! !|||! PheLeuSerIleGlyGlyCysTrpArgProIleSerTrpSerSerThrTyrLysTh 3179641 : tttctcaGTATCGGTGGCTGTTGGAGACCGATCTCGTGGTCTTCGACGTACAAAAC : 3179695 29 : gThrValTyrAsnGlyTyrThrIlePheValThrLeuMetLeuValThrPheMetP : 47 !.!!:!!||||||! !||||||:!!.!!||| !:!!||| !|||!.!|||||| rAlaIleTyrAsnValTyrThrValLeuValLeuIleMetGlyValAsnPheMetV 3179696 : GGCAATCTACAATGTCTACACCGTTCTCGTATTAATCATGGGTGTTAATTTCATGG : 3179752 48 : heProGlnIleMetAspIleIleLeuAsnValAspAsnAlaAspAspPheThrGlu : 65 !! !!||| .!.! !! !!!:!!!!.!:!!!!:!.!!.!.!.||||||..!!!: alSerGln---PheGlySerMetPheThrIleGluThrValGlnAspPheValAsp 3179753 : TTTCGCAA---TTTGGCAGCATGTTCACCATAGAAACCGTACAAGATTTCGTCGAC : 3179803 66 : ThrPheTyrValMetLeuAlaThrValIleAlaSerCysLysMetPheSerLeuLe : 84 ! !|||:!! :!!:!!..! !!:!!!.!!!!||||||:!!! !:!:!!:! LeuThrTyrIleCysValSerValPheValGlyCysCysLysLeuSerAsnValVa 3179804 : CTTACTTACATATGCGTCTCCGTGTTCGTCGGTTGTTGCAAGCTGTCAAACGTGGT : 3179860 85 : uLeuAsnArgLysAsnIleLysIleLeuThrAspAlaLeuAlaGluLysProPheA : 103 !!!! !!||||||:!!|||! ! !|||! !:!! !!!! !||| ! |||! ! lPheTyrArgLysAspIleIleAspLeuMetAsnIlePheMetGluAspProCysA 3179861 : GTTCTATCGGAAAGATATCATAGACCTGATGAACATCTTCATGGAGGATCCTTGTG : 3179917 104 : rgProLeuGluProAspGluIleGluIleArgGlnLysValGluAspThrIleArg : 121 ! !! !.!. !!!:||| !:!!:!:!:! !!:! !!!:||| !:!!||| laCysSerAsnLysGluGluAspGlnValGlnAlaArgTyrAspAspGlnLeuArg 3179918 : CATGTTCGAACAAGGAGGAGGACCAGGTGCAAGCGAGATACGACGATCAATTACGG : 3179971 122 : Thr : 122 :!! Ser 3179972 : TCA : 3179976 vulgar: CbirOr193 9 122 . KQ414646.1 3179640 3179976 + 177 M 40 120 G 1 0 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3179641 3179976 177 + . gene_id 8 ; sequence CbirOr193 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3179641 3179976 . + . KQ414646.1 exonerate:protein2genome:local exon 3179641 3179976 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3179641 3179976 177 + . alignment_id 8 ; Query CbirOr193 ; Align 3179641 10 120 ; Align 3179761 51 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr193 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 229 -> 299 Target range: 3178378 -> 3178591 230 : IleTyrLysPheAlaTyrThrIleAsnGluAsnPheArgIleIleLeuAlaIleGl : 248 ||| :::|||.!! ! |||:!:||| |||!:! !!!::!! !:!:|| IleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLeuGl 3178379 : atttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCTGCA : 3178433 249 : nPheAlaValSerThrLeuValValCysSerAsnMetTyrGlnIleAlaArgThrS : 267 ||||:!!:!!|||:!! !|||:!!|||! !!:!!!:|||:!!!!::!!! !! !! nPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrIleA 3178434 : ATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGATTA : 3178490 268 : er<->LeuSerAlaGluTyrIleProLeuMetLeuTyrThrSerCysMetPheThr : 284 :! !!!||| !.!.!:!:!! !! ! ! !||| !!!!||||||.!!||| snProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeuThr 3178491 : ATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACG : 3178544 285 : GlnIleLeuIleTyrCysTrpTyrGlyAsnGluValLysLeuLys : 299 |||:!:! !:!!|||||||||!:!||||||||||||! !|||||| GlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys 3178545 : CAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: CbirOr193 229 299 . KQ414646.1 3178378 3178591 + 145 M 38 114 G 0 3 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178379 3178591 145 + . gene_id 9 ; sequence CbirOr193 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178379 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178379 3178591 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178379 3178591 145 + . alignment_id 9 ; Query CbirOr193 ; Align 3178379 230 114 ; Align 3178496 268 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr193 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 299 -> 352 Target range: 3165264 -> 3165423 300 : SerValGlnLeuAlaAsnGluIlePheGluMetAspTrpIleThrValAspLysGl : 318 |||:!!|||||| !! !! !||||||.!.! ||||||! :!!:!!:!!!!..! SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAs 3165265 : AGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAA : 3165319 319 : uValLysGluGlyLeuMetMetIleMetAsnArgSerLeuValProIleGluPheS : 337 .|||! ..!!.!|||:!:!!:!!:|||!..|||:!!:!! !||||||||||||! nValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheT 3165320 : CGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCA : 3165376 338 : erSerAlaHisIlePheThrValAsnLeuAspSerPheValLysIle : 352 !!||| !|||:!! !!:!!|||||||||!!:||||||:!! !:!! hrSerIleHisValValSerValAsnLeuGluSerPheMetAlaVal 3165377 : CCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAGTC : 3165423 vulgar: CbirOr193 299 352 . KQ414646.1 3165264 3165423 + 123 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3165265 3165423 123 + . gene_id 10 ; sequence CbirOr193 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3165265 3165423 . + . KQ414646.1 exonerate:protein2genome:local exon 3165265 3165423 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3165265 3165423 123 + . alignment_id 10 ; Query CbirOr193 ; Align 3165265 300 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr193 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 217 -> 299 Target range: 3180418 -> 3180667 218 : ThrAspPheArgGluCysValArgGlnHisAspSerIleTyrLysPheAlaTyrTh : 236 :!!:!!!!.|||||| ..!!:!::! ! ! ! !! !!..!!.||| ! ! SerAsnLeuArgGluLysThrLysArg***ArgPheCysCysSerLeuAlaGluIl 3180419 : TCGAACTTGCGCGAGAAAACGAAGAGATAACGATTCTGTTGCAGTTTAGCTGAAAT : 3180473 237 : rIleAsnGluAsnPheArgIleIleLeuAlaIleGlnPheAlaValSerThrLeuV : 255 !!!:|||!!:!:!.!.!:!:!:! :!! ! !|||||| !! !||| !:!!| eMetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePheGlySerPheMetV 3180474 : AATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTTCGGAAGCTTTATGG : 3180530 256 : alValCysSerAsnMetTyrGlnIleAlaArgThrSer<->LeuSerAlaGluTyr : 272 ||:!!||| !!:!:!! !|||:!: !!.!.!!..! ||||||.!!|||!:! alIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleLeuSerThrGluPhe 3180531 : TGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTCTCAGCACCGAATTC : 3180584 273 : IleProLeuMetLeuTyrThrSerCysMetPheThrGlnIleLeuIleTyrCysTr : 291 :!! !! !!::...||| ||| :::.!. !|||! !!!!:!!|||||||| LeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPheLeuTyrCysTr 3180585 : TTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGCTTTCTTTACTGTTG : 3180641 292 : pTyrGlyAsnGluValLysLeuLys : 299 ||||||||||||||||!:! !||| pTyrGlyAsnGluValArgThrLys 3180642 : GTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: CbirOr193 217 299 . KQ414646.1 3180418 3180667 + 119 M 50 150 G 0 3 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180419 3180667 119 + . gene_id 11 ; sequence CbirOr193 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180419 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180419 3180667 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180419 3180667 119 + . alignment_id 11 ; Query CbirOr193 ; Align 3180419 218 150 ; Align 3180572 268 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr193 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 298 -> 356 Target range: 3178743 -> 3178917 299 : LysSerValGlnLeuAlaAsnGluIlePheGluMetAspTrpIleThrValAspLy : 317 :!!|||! !:!!:!!!.!.!.! |||!:!||||||||||||! .!!:!! !! GlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuProTh 3178744 : CAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCCCAC : 3178798 318 : sGluValLysGluGlyLeuMetMetIleMetAsnArgSerLeuValProIleGluP : 336 !!::!!!:!:!!! !|||:!!:!!|||||| |||||| ! !|||:!!:!!. rAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValLysM 3178799 : CGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTAAAA : 3178855 337 : heSerSerAlaHisIlePheThrValAsnLeuAspSerPheValLysIleLeuLys : 354 !.!!!|||!.!|||:!! !!..!:!!::! !!!:||||||:!!...:!! !!:! etThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerValSerArg 3178856 : TGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTTAGTAGA : 3178909 355 : AlaSer : 356 !||| IleSer 3178910 : ATTTCC : 3178917 vulgar: CbirOr193 298 356 . KQ414646.1 3178743 3178917 + 108 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178744 3178917 108 + . gene_id 12 ; sequence CbirOr193 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178744 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178744 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178744 3178917 108 + . alignment_id 12 ; Query CbirOr193 ; Align 3178744 299 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr198 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 433 Query range: 0 -> 306 Target range: 3163849 -> 3165193 1 : MetSerValMetLysSerThrLeuLeuIleCysThrIleAlaGlyCysTrpGlnPr : 19 |||||||||:!!|||||||||! !|||:!: !! !|||:!!||||||!::! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 3163850 : ATGAGTGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTACCTGCC : 3163904 20 : oProSerTrpLysLeuSerPheLysTyrIleIleIleTyrArgThrTyrAlaMetP : 38 |! !||||||! ! ! !!|||:!! !:!:|||!.!! !|||!.!:!!| oHisSerTrpThrThrProPheGluArg---SerLeuTyrAsnIleTyrGlyValP 3163905 : CCATTCGTGGACAACGCCGTTCGAAAGG---TCTTTGTACAATATCTACGGGGTGT : 3163958 39 : heLeuThrSerLeuLeuTyrLeuPheThrIleSerGluPheMetTyrIleIleLeu : 56 ||! ! ! !|||||| ! !.!!.!!:!!|||:!!.!.:!: !!:!! :!! heTyrLeuLeuLeuLeuSerSerLeuAlaLeuSerGlnIleLeuAspValAlaIle 3163959 : TCTACTTGCTTCTTCTAAGCAGCCTCGCCCTCTCGCAAATATTAGACGTAGCGATC : 3164012 57 : AsnAlaAspSerSerAspAspTyrThrAspSerLeuTyrMetLeuLeuSerIlePh : 75 |||!.!!!:|||..!||||||!:!:::|||:::... ::: ! !:!:|| AsnValGluSerGlnAspAspPheSerAspAsnPheSerIleThrAlaValValPh 3164013 : AACGTGGAGAGCCAGGATGACTTCagtgacaatttttctatcaccGCTGTGGTGTT : 3164069 76 : eValThrAlaTyrLysGlnValSerMetTrpIleAsnTyrLysArgIleMetAlaI : 94 |:!!||| !!:!|||! !! !:!: |||... ! !!.!.!!!!: !: eLeuThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheL 3164070 : TCTCACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTC : 3164126 95 : leIleAsnValLeuSerGluLysLeuPheAlaSerCysAspSerCysGluValThr : 112 !:|||:!!..!|||..!.!.|||! !|||:!! !! |||!!! ||| ! ! euIleAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGlu 3164127 : TGATCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAG : 3164180 113 : IleGlnGluLysPheGluLysMetSer{Gl} >>>> Target Intron 1 >> : 122 |||::!! !||||||||||||!!:!!!{:!} 107 bp IleArgAlaLysPheGluLysIleThr{Gl}++ 3164181 : ATTAGAGCGAAATTCGAGAAGATCACC{GA}gt....................... : 3164214 123 : >> {n}ThrAsnThrSerArgTyrLeuAsnIleValMetLeuSerValIleThrI : 139 {!} !||||||! ! !!|||! !!:!:!!:!!:!::!!!!!!.!.!! !| ++{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleCysAlaPheTrpI 3164215 : ..ag{A}TGGAACACGATTGGCTACTGGAGTTTACTATTAATTTGTGCGTTCTGGA : 3164368 140 : lePheSerMetSerIlePheThrAsnLeuMetLysArgAsnLeuThrTyrLysAla : 157 ||!:! !! |||:!!!!.|||:!!!!!! !..|||!!.|||! !!:!::!||| leTyrValArgSerLeuLeuThrAspPheSerSerArgLysLeuMetPheArgAla 3164369 : TATACGTGAGATCGCTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGCA : 3164422 158 : TrpIleProPheAspTyrSerSerProAlaValPheTyrIleValTyrAlaHisGl : 176 |||:!!|||!:!||||||||| !! !! !!:!!||| !:!!..!!:!!.!||||| TrpLeuProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGl 3164423 : TGGTTACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCA : 3164479 177 : nLeuLeuAlaMetValThrSerGlyIleValAsnIleAlaCysAspSerLeuLeuC : 195 | !:!!||| !..!! !!!! !!! ! !!:!:!!.!! |||||||||! ! nAlaIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrT 3164480 : AGCTATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACA : 3164536 196 : ysGlyPheLeuLeuTyrIleCysCysGlnLeuGluIleLeuGluTyrArgLeuThr : 213 !|||!!.|||:!! !!|||! !||||||!!!||||||||||||:!!||||||! ! hrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArg 3164537 : CTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGG : 3164590 214 : LysMetAlaCysGlyGln<->TyrIleLeuArgAspCysIleIleTyrHisAsnTy : 231 !!.:!: ! !! !||| !! !:!!!:!.!.||| ! !:!!|||:!! AsnValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspAr 3164591 : AACGTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCG : 3164647 232 : rIlePhe{Gl} >>>> Target Intron 2 >>>> {u}TyrThrTyrAlaV : 239 !|||!:!{:!} 325 bp {!}!:!:!! ! !| gIleTyr{Gl}++ ++{n}PheSerLysLysV 3164648 : TATATAC{CA}gt.........................ag{A}TTTTCGAAAAAGG : 3164996 240 : alAsn<->ValPheAlaArgIleIleAlaIleGlnPheValAlaSerAlaIleVal : 256 ||||| ! !||| !! !|||:!: ! !|||||| ! !||| ! ||| alAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerVal 3164997 : TGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTG : 3165050 257 : ValCysSerAsnLeuTyrArgIlePheValAlaValValGluAsnAspTyrIleTh : 275 :!!|||! !||||||||||||!!: ! ! !:!!!!:... :::::: IleCysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGl 3165051 : ATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcga : 3165107 276 : rThrLeuIleIleSerThrTyrThrPheAlaIleLeuMetGlnIlePheLeuTyrC : 294 :!!:!! |||:!!|||..!! !:!!! !|||||||||! !|||| uIleIleLeu---------TyrSerPheCysThrIleThrGlnIlePheTyrTyrC 3165108 : aatcaTACTC---------TACTCTTTCTGCACTATCACGCAGATATTTTACTATT : 3165155 295 : ysTrpPheGlyAsnLysValLysLeuLysSerLeuHis : 306 |||||!:!||||||:!!||||||! !||| ! !||| ysTrpTyrGlyAsnGluValLysHisLysValAspHis 3165156 : GCTGGTACGGCAACGAAGTGAAACATAAGGTTGATCAT : 3165193 vulgar: CbirOr198 0 306 . KQ414646.1 3163849 3165193 + 433 M 28 84 G 1 0 M 92 276 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 97 291 G 0 3 M 14 42 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 6 18 G 0 3 M 38 114 G 3 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3163850 3165193 433 + . gene_id 1 ; sequence CbirOr198 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3163850 3164211 . + . KQ414646.1 exonerate:protein2genome:local exon 3163850 3164211 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3164212 3164213 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164212 3164318 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3164317 3164318 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164319 3164657 . + . KQ414646.1 exonerate:protein2genome:local exon 3164319 3164657 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164658 3164659 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164658 3164982 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3164981 3164982 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164983 3165193 . + . KQ414646.1 exonerate:protein2genome:local exon 3164983 3165193 . + . insertions 3 ; deletions 3 KQ414646.1 exonerate:protein2genome:local similarity 3163850 3165193 433 + . alignment_id 1 ; Query CbirOr198 ; Align 3163850 1 84 ; Align 3163934 30 276 ; Align 3164320 123 291 ; Align 3164614 220 42 ; Align 3164984 235 18 ; Align 3165005 241 114 ; Align 3165119 282 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr198 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 422 Query range: 0 -> 306 Target range: 3157321 -> 3158665 1 : MetSerValMetLysSerThrLeuLeuIleCysThrIleAlaGlyCysTrpGlnPr : 19 |||||||||:!!|||||||||! !|||:!: !! !|||:!!||||||!::! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 3157322 : ATGAGCGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTATCTGCC : 3157376 20 : oProSerTrpLysLeuSerPheLysTyrIleIleIleTyrArgThrTyrAlaMetP : 38 |! !||||||! ! ! !!|||:!! !:!:|||!.!! !|||!.!:::| oHisSerTrpThrThrProPheGluArg---SerLeuTyrAsnIleTyrGlyValP 3157377 : CCATTCGTGGACAACACCGTTCGAAAGG---TCTTTGTACAATATCTACGGGGtgt : 3157430 39 : heLeuThrSerLeuLeuTyrLeuPheThrIleSerGluPheMetTyrIleIleLeu : 56 || |||||| ! !.!!..!:!!|||:!!.!.:!: !!:!! :!! heSerPheLeuLeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIle 3157431 : tctcctttcttcttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATC : 3157484 57 : AsnAlaAspSerSerAspAspTyrThrAspSerLeuTyrMetLeuLeuSerIlePh : 75 |||!.!!!:|||..!||||||!:!!::|||:::... ::: ! ! !:!:|| AsnValGluSerGlnAspAspPheSerAspAsnPheSerValThrAlaValValPh 3157485 : AACGTGGAGAGCCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTT : 3157541 76 : eValThrAlaTyrLysGlnValSerMetTrpIleAsnTyrLysArgIleMetAlaI : 94 |:!!||| !!:!|||! !! !:!: |||... ! !!.!.!!!!: !: eLeuThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheL 3157542 : TCTCACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTC : 3157598 95 : leIleAsnValLeuSerGluLysLeuPheAlaSerCysAspSerCysGluValThr : 112 !:|||:!!..!|||..!.!.|||! !|||:!! !! |||!!! ||| ! ! euIleAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGlu 3157599 : TGATCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAG : 3157652 113 : IleGlnGluLysPheGluLysMetSer{Gl} >>>> Target Intron 1 >> : 122 |||::!! !||||||||||||!!:!!!{:!} 107 bp IleArgAlaLysPheGluLysIleThr{Gl}++ 3157653 : ATTAGAGCGAAATTCGAGAAGATCACC{GA}gt....................... : 3157686 123 : >> {n}ThrAsnThrSerArgTyrLeuAsnIleValMetLeuSerValIleThrI : 139 {!} !||||||! ! !!|||! !!::::::::::::::|||..!.!! !| ++{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheI 3157687 : ..ag{A}TGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTA : 3157840 140 : lePheSerMetSerIlePheThrAsnLeuMetLysArgAsnLeuThrTyrLysAla : 157 ||!:! !! |||:!!!!.! !:!!!!!! !!.|||!!.|||! !!:!::!||| leTyrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAla 3157841 : TATACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCA : 3157894 158 : TrpIleProPheAspTyrSerSerProAlaValPheTyrIleValTyrAlaHisGl : 176 |||||||||!:!||||||||| !! !! !!:!!||| !:!!..!! !!.!||||| TrpIleProTyrAspTyrSerProAlaProIlePheIleLeuThrSerValHisGl 3157895 : TGGATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTCCGTCCATCA : 3157951 177 : nLeuLeuAlaMetValThrSerGlyIleValAsnIleAlaCysAspSerLeuLeuC : 195 | !:!!||| !..!! !!!! !!! ! !!.!:!!.!! |||!!!|||! ! nAlaIleAlaSerThrIleCysCysThrSerThrValThrValAspThrLeuTyrT 3157952 : AGCTATAGCCTCGACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTATACA : 3158008 196 : ysGlyPheLeuLeuTyrIleCysCysGlnLeuGluIleLeuGluTyrArgLeuThr : 213 !|||!!.|||:!! !!|||! !||||||!!!||||||||||||:!!||||||! ! hrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArg 3158009 : CTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGG : 3158062 214 : LysMetAlaCysGlyGln<->TyrIleLeuArgAspCysIleIleTyrHisAsnTy : 231 !!.:!: ! !! !||| !! !:!!!:!.!.||| ! !:!!|||:!! AsnValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspAr 3158063 : AACGTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCG : 3158119 232 : rIlePhe{Gl} >>>> Target Intron 2 >>>> {u}TyrThrTyrAlaV : 239 !|||!:!{:!} 325 bp {!}!:!:!! ! !| gIleTyr{Gl}++ ++{n}PheSerLysLysV 3158120 : TATATAC{CA}gt.........................ag{A}TTTTCGAAAAAGG : 3158468 240 : alAsn<->ValPheAlaArgIleIleAlaIleGlnPheValAlaSerAlaIleVal : 256 ||||| ! !||| !! !|||:!: ! !|||||| ! !||| ! ||| alAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerVal 3158469 : TGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTG : 3158522 257 : ValCysSerAsnLeuTyrArgIlePheValAlaValValGluAsnAspTyrIleTh : 275 :!!|||! !||||||||||||!!: ! ! !:!!!!:... :::::: IleCysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGl 3158523 : ATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcga : 3158579 276 : rThrLeuIleIleSerThrTyrThrPheAlaIleLeuMetGlnIlePheLeuTyrC : 294 :!!:!! |||:!!|||..!! !:!!! !|||||||||! !|||| uIleIleLeu---------TyrSerPheCysThrIleThrGlnIlePheTyrTyrC 3158580 : aatcaTACTC---------TACTCTTTCTGCACTATCACGCAGATATTTTACTATT : 3158627 295 : ysTrpPheGlyAsnLysValLysLeuLysSerLeuHis : 306 |||||!:!||||||:!!|||||| !||| ! !||| ysTrpTyrGlyAsnGluValLysAspLysValAspHis 3158628 : GTTGGTACGGCAACGAAGTGAAAGATAAGGTTGATCAT : 3158665 vulgar: CbirOr198 0 306 . KQ414646.1 3157321 3158665 + 422 M 28 84 G 1 0 M 92 276 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 97 291 G 0 3 M 14 42 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 6 18 G 0 3 M 38 114 G 3 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157322 3158665 422 + . gene_id 2 ; sequence CbirOr198 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3157322 3157683 . + . KQ414646.1 exonerate:protein2genome:local exon 3157322 3157683 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3157684 3157685 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3157684 3157790 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3157789 3157790 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3157791 3158129 . + . KQ414646.1 exonerate:protein2genome:local exon 3157791 3158129 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158130 3158131 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158130 3158454 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3158453 3158454 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158455 3158665 . + . KQ414646.1 exonerate:protein2genome:local exon 3158455 3158665 . + . insertions 3 ; deletions 3 KQ414646.1 exonerate:protein2genome:local similarity 3157322 3158665 422 + . alignment_id 2 ; Query CbirOr198 ; Align 3157322 1 84 ; Align 3157406 30 276 ; Align 3157792 123 291 ; Align 3158086 220 42 ; Align 3158456 235 18 ; Align 3158477 241 114 ; Align 3158591 282 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr198 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 417 Query range: 0 -> 305 Target range: 3149023 -> 3150814 1 : MetSerValMetLysSerThrLeuLeuIleCysThrIleAlaGlyCysTrpGlnPr : 19 |||:!!:!!:!:::! !!.!!!!! !||| ||||||..!|||||||||::!|| MetAlaIleLeuArgProAlaPheAsnIleLeuThrIleCysGlyCysTrpArgPr 3149024 : ATGGCTATCTTACGGCCAGCTTTCAACATACTGACGATCTGCGGATGCTGGAGGCC : 3149078 20 : oProSerTrpLysLeuSerPheLysTyrIleIleIleTyrArgThrTyrAlaMetP : 38 | !|||!! ::! !!!! ::: !! ! |||! !..!|||.!!|||| oCysSerCysArgThrThr---ArgAlaLysAlaAlaTyrIleValTyrThrMetP 3149079 : GTGCTCGTGCCGAACGACA---CGCGCCAAGGCCGCGTACATCGTTTACACGATGT : 3149132 39 : heLeuThrSerLeuLeuTyrLeuPheThrIleSerGluPheMetTyrIleIleLeu : 56 ||:!!..! !||||||:!! !||| !||||||:::|||... :::|||||| heValValLeuLeuLeuHisSerPheCysIleSerGlnPhePheAsnValIleLeu 3149133 : TCGTGGTACTTTTATTGCACAGCTTCTGCATctcgcaatttttcaacgtgatACTG : 3149186 57 : AsnAlaAspSerSerAspAspTyrThrAspSerLeuTyrMetLeuLeuSerIlePh : 75 ||| ! !!!:!!|||!!: !:!!!:|||!!!||||||!!!:!!:!! ! ! AsnLeuArgThrAlaAspGluLeuSerGluSerPheTyrMetPheIleAlaSerVa 3149187 : AACTTGAGAACGGCGGACGAGCTGAGCGAGAGTTTCTACATGTTCATCGCGTCCGT : 3149243 76 : eValThrAlaTyrLysGlnValSerMetTrpIleAsnTyrLysArgIleMetAlaI : 94 !:!!:!!..!! !||| |||!!!:!! !! |||:!! !!!!||| ! !: lLeuSerCysCysLysIleValThrLeuLeuThrAsnHisGlySerIleGluIleL 3149244 : TCTGTCCTGCTGCAAGATCGTCACGCTGCTGACGAACCACGGAAGCATCGAGATCC : 3149300 95 : leIleAsnValLeuSerGluLysLeuPheAlaSerCysAspSerCysGluValThr : 112 !! !.. !|||..!|||:!!! !! ! ! !! ..!:!! |||!.!..! euArgArgArgLeuGluGluGluProCysLysProValSerAlaGluGluAlaVal 3149301 : TCCGGAGGAGACTGGAGGAGGAGCCGTGTAAACCTGTGAGCGCCGAGGAGGCTGTC : 3149354 113 : IleGlnGluLysPheGluLysMetSer{Gl} >>>> Target Intron 1 >> : 122 ||||||...||||||!!:!:!! ! !{ } 649 bp IleGlnSerLysPheAspArgAsnIle{Gl}++ 3149355 : ATACAGAGTAAATTCGACAGAAACATC{GG}gt....................... : 3149388 123 : >> {n}ThrAsnThrSerArgTyrLeuAsnIleValMetLeuSerValIleThrI : 139 {!}:!! |||! ! !||| !! !:!:||| |||!!!|||:!! !! ++{y}SerValThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCysM 3149389 : ..ag{G}TCGGTGACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTGTA : 3150084 140 : lePheSerMetSerIlePheThrAsnLeuMetLysArgAsnLeuThrTyrLysAla : 157 !:.!! ! |||:!:.!! !:!!!!!! :!!|||.!.|||.!!|||!:!||| etIleLeuSerSerLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgAla 3150085 : TGATCCTCTCTTCGTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAGCC : 3150138 158 : TrpIleProPheAspTyrSerSerProAlaValPheTyrIleValTyrAlaHisGl : 176 |||:!:||||||||||||||| !|||.!! !!:!||||||!.!|||!.!||||| TrpLeuProPheAspTyrSerLeuProThrTyrTyrTyrIleAlaTyrValHisGl 3150139 : TGGCTGCCCTTCGATTACTCTCTGCCAACTTACTATTACATCGCGTACGTTCATCA : 3150195 177 : nLeuLeuAlaMetValThrSerGlyIleValAsnIleAlaCysAspSerLeuLeuC : 195 |:!!:!!|||:!!:!! !!!!..!:!! !|||:!!||||||||| !:!!:!!| nIleValAlaLeuIleGlyThrSerLeuSerAsnValAlaCysAspValIleIleC 3150196 : GATCGTCGCGCTGATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCATCT : 3150252 196 : ysGlyPheLeuLeuTyrIleCysCysGlnLeuGluIleLeuGluTyrArgLeuThr : 213 |||||!!.|||:!!:!! !||| !!|||! !|||||||||:!!:!!|||:!!! ! ysGlyLeuLeuValHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMetLys 3150253 : GCGGGTTGCTCGTTCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATGAAG : 3150306 214 : LysMetAlaCysGlyGlnTyr<->IleLeuArgAspCysIleIleTyrHisAsnTy : 231 :!!|||.!! ! !||| ! !:!! !! ! !:!! !!:!|||:!!|| GluMetThrGlnGluGlnArgProAsnIleGlyLysIleValArgPheHisAspTy 3150307 : GAGATGACGCAGGAACAGAGGCCGAATATCGGGAAAATCGTTCGTTTCCACGATTA : 3150363 232 : rIlePhe{Gl} >>>> Target Intron 2 >>>> {u}TyrThrTyrAlaV : 239 |:!!!:!{! } 230 bp {!}|||..!!:!.!!: rLeuTyr{Gl}++ ++{y}TyrValPheThrM 3150364 : TCTTTAC{GG}gt.........................ag{G}TACGTTTTCACGA : 3150617 240 : al<->AsnValPheAlaArgIleIleAlaIleGlnPheValAlaSerAlaIleVal : 256 !! .!. !||| ! !!||||||!.!:!:|||.!!:!!:!!|||.!!:!:||| etGlnGluLysPheArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuVal 3150618 : TGCAAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGGTA : 3150671 257 : ValCysSerAsnLeuTyrArgIlePheValAlaValValGluAsnAspTyrIleTh : 275 ||||||! !! !||||||..!:!: !.!! ! ! !:!..! ! ! ValCysPheIleLeuTyrGluLeuAlaAsnThrProProIleSerSerLysTyrLe 3150672 : GTGTGTTTCATCCTGTACGAATTGGCGAACACGCCTCCAATCAGCTCCAAGTACCT : 3150728 276 : rThrLeuIleIleSerThrTyrThrPheAlaIleLeuMetGlnIlePheLeuTyrC : 294 ! !!!!:!!:!: ||| ! !..!!!::!!! !|||||||||!!!|||| uGlnPheValLeu------TyrLeuAlaCysMetMetThrGlnIlePhePheTyrC 3150729 : GCAATTTGTCCTG------TACCTGGCCTGTATGATGACGCAGATCTTCTTTTACT : 3150779 295 : ysTrpPheGlyAsnLysValLysLeuLysSerLeu : 305 |||||!:!|||.!.:!!:!!||||||||| !||| ysTrpTyrGlyGluGlnLeuLysLeuLysValLeu 3150780 : GCTGGTACGGCGAGCAGTTGAAACTGAAGGTACTG : 3150814 vulgar: CbirOr198 0 305 . KQ414646.1 3149023 3150814 + 417 M 25 75 G 1 0 M 95 285 S 0 2 5 0 2 I 0 645 3 0 2 S 1 1 M 98 294 G 0 3 M 13 39 S 0 2 5 0 2 I 0 226 3 0 2 S 1 1 M 5 15 G 0 3 M 40 120 G 2 0 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3149024 3150814 417 + . gene_id 3 ; sequence CbirOr198 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3149024 3149385 . + . KQ414646.1 exonerate:protein2genome:local exon 3149024 3149385 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3149386 3149387 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3149386 3150034 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150033 3150034 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150035 3150373 . + . KQ414646.1 exonerate:protein2genome:local exon 3150035 3150373 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150374 3150375 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150374 3150603 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3150602 3150603 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150604 3150814 . + . KQ414646.1 exonerate:protein2genome:local exon 3150604 3150814 . + . insertions 3 ; deletions 2 KQ414646.1 exonerate:protein2genome:local similarity 3149024 3150814 417 + . alignment_id 3 ; Query CbirOr198 ; Align 3149024 1 75 ; Align 3149099 27 285 ; Align 3150036 123 294 ; Align 3150333 221 39 ; Align 3150605 235 15 ; Align 3150623 240 120 ; Align 3150743 282 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr198 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 228 Query range: 123 -> 312 Target range: 3155403 -> 3156039 124 : AsnThrSerArgTyrLeuAsnIleValMetLeuSerValIleThrIlePheSerMe : 142 !..!:!|||! !|||! ! |||:!!:!: !|||..!:!:! !! !!!.|||.! ArgSerSerThrTyrTyrAlaIleLeuValGluSerThrValMetThrLeuSerPh 3155404 : AGAAGCTCAACCTATTACGCGATTCTGGTCGAATCGACGGTGATGACTTTGTCTTT : 3155458 143 : tSerIlePheThrAsnLeuMetLysArgAsnLeuThrTyrLysAlaTrpIleProP : 161 ..!! !.!. !!!.! ! ..!||| !||| !!|||::! !|||:!!|||! eGlyAlaLeuLeuLysProGluSerArgProLeuProTyrArgIleTrpLeuProC 3155459 : CGGTGCACTGTTGAAACCAGAATCACGTCCTTTACCGTATCGAATTTGGCTACCTT : 3155515 162 : heAspTyrSerSerProAlaValPheTyrIleValTyrAlaHisGlnLeuLeuAla : 179 !:!!|||!!! !! ! !..!!:!! ! :!!|||.!!! !|||! !:!!||| ysAsnTyrThrProLeuIleThrTyrCysSerIleTyrThrLeuGlnCysValAla 3155516 : GCAATTACACCCCGTTAATTACTTACTGTTCGATTTACACTCTCCAATGTGTGGCA : 3155569 180 : MetValThrSerGlyIleValAsnIleAlaCysAspSerLeuLeuCysGlyPheLe : 198 :!:!.! !|||!.!!!::!!:!!:!!|||||||||||||||:!!||||||.!.|| LeuAlaLeuSerAlaMetMetHisValAlaCysAspSerLeuIleCysGlyLeuLe 3155570 : CTCGCTCTAAGCGCTATGATGCACGTCGCCTGCGACAGTTTGATCTGCGGCCTGCT : 3155626 199 : uLeuTyrIleCysCysGlnLeuGluIleLeuGluTyrArgLeuThrLysMetAlaC : 217 ||||:!!! !! ! !!|||:!!|||||||||! ! !||||||! ::: uLeuHisThrTyrGlyGlnIleGluIleLeuGlyCysArgLeuLysThrIleLysG 3155627 : GTTACACACTTACGGCCAGATCGAGATCCTCGGTTGTCGTCTGAaaacgataaaag : 3155683 218 : ysGlyGln<->TyrIleLeuArgAspCysIleIleTyrHisAsnTyrIlePhe{Gl : 234 ...::: ! ! ! !!:! |||:!! !|||:!!||| !|||!:!{.. luAsnGluSerLysThrSerLysLeuCysValArgTyrAsnAsnLeuIleTyr{Ar 3155684 : aaaacgagagtAAGACGTCCAAGTTGTGCGTTCGTTACAACAACCTTATCTAT{CG : 3155737 235 : } >>>> Target Intron 1 >>>> {u}TyrThrTyrAlaValAsn<->Va : 241 } 69 bp {!}!:!||| ! !:!!||| }++ ++{g}PheThrAlaMetIleAsnGluGl 3155738 : }gt.........................ag{A}TTCACCGCTATGATAAACGAGCA : 3155830 242 : lPheAlaArgIleIleAlaIleGlnPheValAlaSerAlaIleValValCysSerA : 260 !|||! !! ! ||| !! !||||||!.!!.!|||.!!:!:!.!:!!|||! !| nPheGluMetAlaIlePheThrGlnPheAlaValSerThrLeuAlaIleCysPheA 3155831 : ATTCGAGATGGCGATTTTCACTCAATTCGCGGTGAGTACGCTGGCGATATGCTTCA : 3155887 261 : snLeuTyrArgIlePheValAlaValValGluAsnAspTyrIleThrThrLeuIle : 278 ||||||||! !:!! ! !:!!! !||| ! |||! ! !:!! ! snLeuTyrLeuLeuThrGlySerAspValThrPro------IleArgTyrValGlu 3155888 : ATCTTTACCTATTAACAGGATCAGATGTGACGCCG------ATTAGGTATGTGGAA : 3155935 279 : IleSerThrTyrThrPheAlaIleLeuMetGlnIlePheLeuTyrCysTrpPheGl : 297 |||! !! !|||!:! !..!!!:|||! !|||||||||:!!|||||||||!:!|| IleIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysTrpTyrGl 3155936 : ATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTGGTACGG : 3155992 298 : yAsnLysValLysLeuLysSerLeuHisLeuAlaAsnSerIleTyr : 312 ||||:!!|||||||||||| !! !:!!!!! !:!!!!! !||| yAsnGluValLysLeuLysValSerTyrPheArgHisCysSerTyr 3155993 : GAACGAAGTTAAGCTGAAGGTTTCTTATTTTCGACATTGTTCATAT : 3156039 vulgar: CbirOr198 123 312 . KQ414646.1 3155403 3156039 + 228 M 96 288 G 0 3 M 14 42 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 6 18 G 0 3 M 31 93 G 2 0 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155404 3156039 228 + . gene_id 4 ; sequence CbirOr198 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3155404 3155738 . + . KQ414646.1 exonerate:protein2genome:local exon 3155404 3155738 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3155739 3155740 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3155739 3155807 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3155806 3155807 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3155808 3156039 . + . KQ414646.1 exonerate:protein2genome:local exon 3155808 3156039 . + . insertions 3 ; deletions 2 KQ414646.1 exonerate:protein2genome:local similarity 3155404 3156039 228 + . alignment_id 4 ; Query CbirOr198 ; Align 3155404 124 288 ; Align 3155695 220 42 ; Align 3155809 235 18 ; Align 3155830 241 93 ; Align 3155923 274 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr198 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 127 -> 237 Target range: 3160071 -> 3160407 128 : TyrLeuAsnIleValMetLeuSerValIleThrIlePheSerMetSerIlePheTh : 146 ||| ! ! !..!:!:||||||!.!! ! !:!!!::! !:!!||| !.!.|| TyrThrValCysThrValLeuSerAlaThrGlyValTrpMetLeuSerAlaMetTh 3160072 : TATACGGTTTGTACAGTACTGAGCGCGACTGGTGTATGGATGTTGTCGGCCATGAC : 3160126 147 : rAsnLeuMetLysArgAsnLeuThrTyrLysAlaTrpIleProPheAspTyr<->S : 164 | !!!! !! |||.!.||| !! !::!!.!|||:!!|||||||||||| : rAlaPheArgIleArgGluLeuProLeuArgValTrpLeuProPheAspTyrArgA 3160127 : GGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGGTTACCTTTCGATTATAGAG : 3160183 165 : erSerProAlaValPheTyrIleValTyrAlaHisGlnLeuLeuAlaMetValThr : 182 !!!!! !!.!:!!||| !:!!..!||||||:!!|||!!!:!!.!!:!!:!! ! laThrLeuGlyIlePheSerLeuThrTyrAlaTyrGlnPheValThrLeuIlePhe 3160184 : CCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAGTTTGTAACTCTGATATTC : 3160237 183 : SerGlyIleValAsnIleAlaCysAspSerLeuLeuCysGlyPheLeuLeuTyrIl : 201 ! ! !! !!.!! !!!:!.! !|||!:!|||!!! !!|||.!.|||:!!:!!|| IleThrThrAlaIleMetGlyThrAspAsnLeuPheSerGlyLeuLeuIleHisIl 3160238 : ATTACTACCGCGATTATGGGTACTGACAATCTATTCAGCGGACTGTTGATCCACAT : 3160294 202 : eCysCysGlnLeuGluIleLeuGluTyrArgLeuThrLysMetAlaCysGly<->G : 219 |! !||||||!!!|||||||||:!!:!!||||||! !!..!!: ! !! ! : eTyrCysGlnPheGluIleLeuGlnHisArgLeuLysSerIleLysProAspArgG 3160295 : TTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGAGCATTAAACCTGACAGGG : 3160351 220 : lnTyrIleLeuArgAspCysIleIleTyrHisAsnTyrIlePheGluTyrThrTyr : 237 !!||| ! !!:!.!.||| !.!!:!!||| !! !|||!:!:!!!:!...||| luTyrSerAlaLysGlnCysAlaPheHisHisTyrArgIleTyrLysPheValTyr 3160352 : AGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGCATATACAAGTTTgtctac : 3160405 vulgar: CbirOr198 127 237 . KQ414646.1 3160071 3160407 + 150 M 36 108 G 0 3 M 55 165 G 0 3 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160072 3160407 150 + . gene_id 5 ; sequence CbirOr198 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160072 3160407 . + . KQ414646.1 exonerate:protein2genome:local exon 3160072 3160407 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160072 3160407 150 + . alignment_id 5 ; Query CbirOr198 ; Align 3160072 128 108 ; Align 3160183 164 165 ; Align 3160351 219 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr198 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 135 -> 237 Target range: 3174305 -> 3174618 136 : ValIleThrIlePheSerMetSerIlePheThrAsnLeuMetLysArgAsnLeuTh : 154 ::: |||:::! ! !|||||||||||| !!!!! !! |||.!.||| ! IleTyrCysIleTrpPheSerSerIlePheThrAlaPheLysIleArgGluLeuPr 3174306 : atttactgtatatggTTCTCGTCGATCTTCACGGCTTTTAAGATCAGAGAGTTACC : 3174360 155 : rTyrLysAlaTrpIle-ProPheAspTyr<->SerSerProAlaValPheTyrIle : 171 ! !::!!.!|||:!!#|||||||||||| :!!!!! !!.!:!!||| !:!! oLeuArgGlyTrpLeu#ProPheAspTyrArgAlaThrLeuGlyIlePheSerLeu 3174361 : CCTTCGAGGATGGTTAACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTT : 3174415 172 : ValTyrAlaHisGlnLeuLeuAlaMetValThrSerGlyIleValAsnIleAlaCy : 190 ..!||||||:!!|||!!!:!!.!!:!!:!! ! ! ! !!.!! !|||!.!! ThrTyrAlaTyrGlnPheValThrLeuIlePheLeuThrSerAlaIleIleGlySe 3174416 : ACCTACGCTTATCAGTTTGTAACTCTGATATTCCTTACTTCTGCTATTATCGGTTC : 3174472 191 : sAspSerLeuLeuCysGlyPheLeuLeuTyrIleCysCysGlnLeuGluIleLeuG : 209 !|||!:!|||!!! !!|||.!.|||:!!:!!|||! !||||||!!!|||||||||: rAspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuG 3174473 : TGACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCC : 3174529 210 : luTyrArgLeuThrLysMetAlaCysGly<->GlnTyrIleLeuArgAspCysIle : 226 !!:!!||||||! !!..!!: ! !! ! :!!||| ! !!:!.!.||| ! lnHisArgLeuLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAla 3174530 : AACATCGTCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCT : 3174583 227 : IleTyrHisAsnTyrIlePheGluTyrThrTyr : 237 .!!:!!||| !! !|||!:!:!!!:!...||| PheHisHisTyrArgIleTyrLysPheValTyr 3174584 : TTTCATCATTATCGCATATACAAGTTTgtctac : 3174618 vulgar: CbirOr198 135 237 . KQ414646.1 3174305 3174618 + 125 M 24 72 F 0 1 M 4 12 G 0 3 M 55 165 G 0 3 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174306 3174618 125 + . gene_id 6 ; sequence CbirOr198 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174306 3174618 . + . KQ414646.1 exonerate:protein2genome:local exon 3174306 3174618 . + . insertions 6 ; deletions 0 ; frameshifts 1 KQ414646.1 exonerate:protein2genome:local similarity 3174306 3174618 125 + . alignment_id 6 ; Query CbirOr198 ; Align 3174306 136 72 ; Align 3174379 160 12 ; Align 3174394 164 165 ; Align 3174562 219 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr198 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 9 -> 124 Target range: 3177258 -> 3177600 10 : IleCysThrIleAlaGlyCysTrpGlnProProSerTrpLysLeuSerPheLysTy : 28 :!: !||| !..!|||! !|||:!!||| !!!.!||| ! !|||! ! ! LeuLeuThrCysCysGlyTyrTrpLysProThrLysTrpProAlaSerSerLeuLy 3177259 : CTGCTTACTTGCTGCGGCTACTGGAAACCGACAAAATGGCCAGCTAGTTCGCTGAA : 3177313 29 : rIleIleIleTyrArgThrTyrAlaMetPheLeuThrSerLeuLeuTyrLeuPheT : 47 ! :!:||| !..!|||:!!:!!|||:!!..!! !|||||||||...|||| sTyrTrpLeuTyrAspValTyrSerValPheMetValPheLeuLeuTyrPhePheT 3177314 : ATACTGGCTGTACGACGTTTACTCGGTGTTTATGGTCTTTTTGCTctattttttca : 3177370 48 : hrIleSerGluPheMetTyrIleIleLeuAsnAlaAspSerSerAspAspTyrThr : 65 ||... !! !! !!!: !! :!::!!!:! !||| !!.! ||| hrPheCysAlaCysIleAspSerLeuIleSerLysAspLeuLys---ThrMetThr 3177371 : cgttttgCGCATGCATAGACTCGTTGATCAGCAAAGATCTCAAG---ACGATGACA : 3177421 66 : AspSerLeuTyrMetLeuLeuSerIlePheValThrAlaTyrLysGlnValSerMe : 84 |||!.!!!!! !:!!!!!:!!|||:!:|||! !..!:!! ||| !!.!!:!:! AspLysPheSerLeuPheIleSerValPheGlyValSerLeuLysValAlaAsnLe 3177422 : GATAAGTTTTCTCTGTTCATCTCTGTGTTCGGTGTCTCTCTGAAAGTAGCCAATTT : 3177478 85 : tTrpIleAsnTyrLysArgIleMetAlaIleIleAsnValLeuSerGluLysLeuP : 103 :!:::!!.!. !||||||!!: !:!:!!:|||:!!||| ! !:!! !! uPheLeuGlnArgGlyArgIleIleAsnValMetAsnIleLeuLeuThrGluAsnC 3177479 : ATTCCTTCAACGGGGGAGGATTATAAACGTGATGAACATTTTGCTGACGGAGAATT : 3177535 104 : heAlaSerCysAspSerCysGluValThrIleGlnGluLysPheGluLysMetSer : 121 ! ! !! ! |||..! ||| !! !||||||..!||| !!!:!!. :!! ysIleProArgAspGluGlnGluLysIleIleGlnArgLysAsnAspAsnTyrAla 3177536 : GCATCCCGAGGGACGAGCAAGAAAAGATAATACAACGGAAGAACGATAATTACGCG : 3177589 122 : GlnThrAsn : 124 ::!:!!::: ArgSerSer 3177590 : AGGTCTtct : 3177600 vulgar: CbirOr198 9 124 . KQ414646.1 3177258 3177600 + 120 M 52 156 G 1 0 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3177259 3177600 120 + . gene_id 7 ; sequence CbirOr198 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3177259 3177600 . + . KQ414646.1 exonerate:protein2genome:local exon 3177259 3177600 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3177259 3177600 120 + . alignment_id 7 ; Query CbirOr198 ; Align 3177259 10 156 ; Align 3177415 63 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr198 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 303 -> 370 Target range: 3161001 -> 3161363 304 : SerLeuHisLeuAlaAsnSerIleTyrAspLeuGluTrpArgThrLeuThrValSe : 322 ||||||.!.:!!..!:!!!!!:!!!:!!!: !.!.|||! !.!!|||!:! !|| SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSe 3161002 : AGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAG : 3161056 323 : rThrLysLysAlaLeuLeuLeuIleMetAsnArgAlaLysIleProIleGluPheL : 341 ||||||||||.!!|||||| !|||||| |||:!! !! ||||||||||||! rThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheT 3161057 : CACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCA : 3161113 342 : ysSerIleSerIleLeuThrMetAsnArgAspSerTyrLeuAsn >>>> Targe : 356 .!! !! !:!!!!! !!:!:||| !!!:|||!:! !!:! hrGlyAlaPheValPheProValAsnLeuGluSerPheLysSer++ 3161114 : CCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAAAGTgt.......... : 3161160 357 : t Intron 1 >>>> LeuLeuLysLeuSerTyrSerAlaPheAsnValLeuTyr : 368 161 bp |||:!!||| !|||||||||!.!|||||||||:!! ! ++LeuValLysThrSerTyrSerValPheAsnValIleGln 3161161 : ...............agTTGGTGAAAACTTCCTATTCGGTATTCAACGTAATCCAG : 3161355 369 : HisThr : 370 !!.||| GlnThr 3161356 : CAAACG : 3161363 vulgar: CbirOr198 303 370 . KQ414646.1 3161001 3161363 + 115 M 52 156 5 0 2 I 0 157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3161002 3161363 115 + . gene_id 8 ; sequence CbirOr198 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3161002 3161157 . + . KQ414646.1 exonerate:protein2genome:local exon 3161002 3161157 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3161158 3161159 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3161158 3161318 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3161317 3161318 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3161319 3161363 . + . KQ414646.1 exonerate:protein2genome:local exon 3161319 3161363 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3161002 3161363 115 + . alignment_id 8 ; Query CbirOr198 ; Align 3161002 304 156 ; Align 3161319 356 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr198 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 303 -> 370 Target range: 3175212 -> 3175574 304 : SerLeuHisLeuAlaAsnSerIleTyrAspLeuGluTrpArgThrLeuThrValSe : 322 ||||||.!.:!!..!:!!!!!:!!!:!!!: !.!.|||! !.!!|||!:! !|| SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSe 3175213 : AGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAG : 3175267 323 : rThrLysLysAlaLeuLeuLeuIleMetAsnArgAlaLysIleProIleGluPheL : 341 ||||||||||.!!|||||| !|||||| |||:!! !! ||||||||||||! rThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheT 3175268 : CACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCA : 3175324 342 : ysSerIleSerIleLeuThrMetAsnArgAspSerTyrLeuAsn >>>> Targe : 356 .!! !! !:!!!!! !!:!:||| !!!:|||!:! !!:! hrGlyAlaPheValPheProValAsnLeuGluSerPheLysSer++ 3175325 : CCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAAAGTgt.......... : 3175371 357 : t Intron 1 >>>> LeuLeuLysLeuSerTyrSerAlaPheAsnValLeuTyr : 368 161 bp |||:!!||| !|||||||||!.!|||||||||:!! ! ++LeuValLysThrSerTyrSerValPheAsnValIleGln 3175372 : ...............agTTGGTGAAAACTTCCTATTCGGTATTCAACGTAATCCAG : 3175566 369 : HisThr : 370 !!.||| GlnThr 3175567 : CAAACG : 3175574 vulgar: CbirOr198 303 370 . KQ414646.1 3175212 3175574 + 115 M 52 156 5 0 2 I 0 157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3175213 3175574 115 + . gene_id 9 ; sequence CbirOr198 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3175213 3175368 . + . KQ414646.1 exonerate:protein2genome:local exon 3175213 3175368 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3175369 3175370 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3175369 3175529 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3175528 3175529 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3175530 3175574 . + . KQ414646.1 exonerate:protein2genome:local exon 3175530 3175574 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3175213 3175574 115 + . alignment_id 9 ; Query CbirOr198 ; Align 3175213 304 156 ; Align 3175530 356 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr198 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 229 -> 303 Target range: 3178372 -> 3178591 230 : AsnTyrIlePheGluTyrThrTyrAlaValAsn<->ValPheAlaArgIleIleAl : 247 |||:::||| ...!:!||| ! .!!|||||| |||||| ! !!!:||| AsnPheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePh 3178373 : aatttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTT : 3178427 248 : aIleGlnPheValAlaSerAlaIleValValCysSerAsnLeuTyrArgIlePheV : 266 !:!:|||||| ! !|||:!!! |||:!!|||! !!:!:!!|||!:! : eLeuGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLys------M 3178428 : CCTGCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAA------A : 3178478 267 : alAlaValValGluAsnAspTyrIleThrThrLeuIleIleSerThrTyrThrPhe : 284 !!:!!..!:!!.!. ! !!!:!.! !:!! !:!!:!!||| !! ! etSerThrIleAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCys 3178479 : TGTCGACGATTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGC : 3178532 285 : AlaIleLeuMetGlnIlePheLeuTyrCysTrpPheGlyAsnLysValLysLeuLy : 303 ..!!!:|||! !|||:!:!:!|||||||||||||||||||||:!!|||! !||||| CysMetLeuThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLy 3178533 : TGTATGCTCACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAA : 3178589 304 : s : 303 | s 3178590 : G : 3178591 vulgar: CbirOr198 229 303 . KQ414646.1 3178372 3178591 + 109 M 11 33 G 0 3 M 23 69 G 2 0 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178373 3178591 109 + . gene_id 10 ; sequence CbirOr198 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178373 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178373 3178591 . + . insertions 3 ; deletions 2 KQ414646.1 exonerate:protein2genome:local similarity 3178373 3178591 109 + . alignment_id 10 ; Query CbirOr198 ; Align 3178373 230 33 ; Align 3178409 241 69 ; Align 3178478 266 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr199 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 660 Query range: 0 -> 369 Target range: 3163849 -> 3165545 1 : MetArgValLeuArgPheThrLeuLeuIleCysAlaPheAlaGlyCysTrpGlnPr : 19 |||!!!||||||!:!! !|||! !|||:!: ! !.!!:!!||||||!::! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 3163850 : ATGAGTGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTACCTGCC : 3163904 20 : oSerSerTrpThrSerLeuLeuLysHisIleIleTyrLysThrTyrAlaMetPheL : 38 | !|||||||||!!!! !!!!:!!... !:!:|||!!.! !|||!.!:!!|||! oHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheT 3163905 : CCATTCGTGGACAACGCCGTTCGAAAGGTCTTTGTACAATATCTACGGGGTGTTCT : 3163961 39 : euGlySerAlaLeuCysIlePheSerIleSerGlnPheMetAsnIleMetLeuAsn : 56 ! ! ! !||| !!! !.!!:!!:!!||||||.!.:!::!!:!! !:!!||| yrLeuLeuLeuLeuSerSerLeuAlaLeuSerGlnIleLeuAspValAlaIleAsn 3163962 : ACTTGCTTCTTCTAAGCAGCCTCGCCCTCTCGCAAATATTAGACGTAGCGATCAAC : 3164015 57 : ValGluAsnSerAspGluPheIleAspSerLeuTyrMetMetLeuThrValPheVa : 75 ||||||!:!..!|||!!:||| |||:::... ::: !..!||||||:! ValGluSerGlnAspAspPheSerAspAsnPheSerIleThrAlaValValPheLe 3164016 : GTGGAGAGCCAGGATGACTTCagtgacaatttttctatcaccGCTGTGGTGTTTCT : 3164072 76 : lAlaSerTyrLysGlnValTyrMetTrpArgAspArgLysAsnIleMetMetIleI : 94 !.!!!!!!:!|||! ! !:!: ! ! ||| !|||.!!!!:.!.:!:| uThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuI 3164073 : CACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGA : 3164129 95 : leAsnValPheThrPheLysLeuPheAlaProCysGluSerTyrGluValThrIle : 112 ||:!!..!.!! ! !|||! !|||:!!||| !!:!!! ! ||| ! !||| leAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIle 3164130 : TCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATT : 3164183 113 : GlnArgLysPheGluLysIleThr{Ly} >>>> Target Intron 1 >>>> : 121 ::! !||||||||||||||||||{:!} 107 bp ArgAlaLysPheGluLysIleThr{Gl}++ + 3164184 : AGAGCGAAATTCGAGAAGATCACC{GA}gt.........................a : 3164317 122 : {s}AsnAsnThrLeuArgTyrLeuLeuLeuIleValIleAlaIleAlaSerMetI : 139 {!} ||||||:!! !!|||! ! !|||:!!:!!|||..! !!!!!!: +{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleCysAlaPheTrpIleT 3164318 : g{A}TGGAACACGATTGGCTACTGGAGTTTACTATTAATTTGTGCGTTCTGGATAT : 3164371 140 : leMetMetSerValLeuThrGluLeuThrLysArgAsnLeuThrTyrLysAlaTrp : 157 !:!!! |||:!!||||||!!:!!!!:!!..|||!!.|||! !!:!::!|||||| yrValArgSerLeuLeuThrAspPheSerSerArgLysLeuMetPheArgAlaTrp 3164372 : ACGTGAGATCGCTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGCATGG : 3164425 158 : IleProPheAsnTyrSerSerProAlaValTyrPheLeuValTyrIleHisGlnLe : 176 :!!|||!:!:!!|||||| !! !! !!:!!!:!.!!|||..!!:!:!!|||||| LeuProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAl 3164426 : TTACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGC : 3164482 177 : uIleGlyMetAlaThrSerGlyIleValAsnValAlaCysGluSerLeuIlePheG : 195 !|||!.! !.!!! !!!! !!! ! !!:!|||.!! !!:|||||| ! !| aIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrG 3164483 : TATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTG : 3164539 196 : lyLeuLeuLeuGlnIleCysGlyGlnLeuGluIleLeuGluHisArgLeuThrLys : 213 ||||||||:!!.!.|||! ! !!|||!!!|||||||||||||||||||||! !!!. lyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsn 3164540 : GCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAAC : 3164593 214 : Leu<->ValHisAspGluGlyIleIleGlyAspCysIleLeuHisHisAsnLeuIl : 231 :!! ..!.!..!.!!:! ! !:!: !.!.||| !! !||||||:!!! !|| ValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIl 3164594 : GTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTAT : 3164650 232 : ePhe{Gl} >>>> Target Intron 2 >>>> {u}TyrAlaTyrLysValA : 239 |!:!{:!} 325 bp {!}!:!:!! ! ||||||| eTyr{Gl}++ ++{n}PheSerLysLysValA 3164651 : ATAC{CA}gt.........................ag{A}TTTTCGAAAAAGGTGA : 3164999 240 : snAsnMetPheAlaLysIleIleAlaLeuGlnPheAlaValSerMetLeuValVal : 257 ||.!. ||| ! !|||:!: !! !||||||..!:!!||||||! !|||:!! snGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIle 3165000 : ACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATC : 3165053 258 : CysSerAsnLeuTyrArgLeuAlaMetValThrAspTyrValThrPheIleSerLe : 276 |||! !||||||||||||:!!.!!..!:!!! ! ! ... |||:::...:: CysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIl 3165054 : TGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaat : 3165110 277 : uThrThrTyrThrCysAlaIleLeuThrGlnIlePheIleTyrCysTrpPheGlyA : 295 : ! !|||:!!! !..!! !:!!|||||||||||| !|||||||||!:!|||| eIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyA 3165111 : caTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGGCA : 3165167 296 : snGluValLysIleLys >>>> Target Intron 3 >>>> SerLeuHisL : 304 ||||||||||| !||| 80 bp ||||||!!.| snGluValLysHisLys++ ++SerLeuGlnL 3165168 : ACGAAGTGAAACATAAGgt.........................agAGCCTCCAAC : 3165274 305 : euAlaAsnLysIleTyrAsnMetGluTrpLeuThrLeuSerAsnSerCysLysLys : 322 || !! !!! !|||!:!:!!! !!:||| !:!!|||!:!|||!:! !! !:! euProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArg 3165275 : TTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGA : 3165328 323 : GlyLeuLeuMetIleMetLysArgAlaThrValProIleGluPheSerSerAlaTy : 341 !.!||||||!!:!!:|||!:!||||||..! !||||||||||||!!!||| !:! AlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheThrSerIleHi 3165329 : GCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCA : 3165385 342 : rValIleThrMetAsnLeuAspSerPheAlaAla >>>> Target Intron 4 : 353 !|||:!!:!!:!!||||||!!:|||||| !||| 74 bp sValValSerValAsnLeuGluSerPheMetAla++ 3165386 : CGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt.................... : 3165423 354 : >>>> LeuLeuLysMetSerTyrSerAlaPheAsnLeuLeuHisGlnThrGlnG : 369 :!!:!!|||! ||||||||||||||||||:!!:!!!!.|||!:!:!!: ++ValIleLysThrSerTyrSerAlaPheAsnMetIleGlnGlnSerLysG 3165424 : .....agGTAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAACAAAGCAAAC : 3165543 370 : lu : 369 !! ln 3165544 : AA : 3165545 vulgar: CbirOr199 0 369 . KQ414646.1 3163849 3165545 + 660 M 120 360 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 93 279 G 0 3 M 18 54 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 67 201 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3163850 3165545 660 + . gene_id 1 ; sequence CbirOr199 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3163850 3164211 . + . KQ414646.1 exonerate:protein2genome:local exon 3163850 3164211 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164212 3164213 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164212 3164318 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3164317 3164318 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164319 3164657 . + . KQ414646.1 exonerate:protein2genome:local exon 3164319 3164657 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164658 3164659 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164658 3164982 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3164981 3164982 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164983 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164983 3165184 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165185 3165186 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165185 3165264 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3165263 3165264 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165265 3165420 . + . KQ414646.1 exonerate:protein2genome:local exon 3165265 3165420 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165421 3165422 . + . intron_id 4 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165421 3165494 . + . intron_id 4 KQ414646.1 exonerate:protein2genome:local splice3 3165493 3165494 . + . intron_id 3 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165495 3165545 . + . KQ414646.1 exonerate:protein2genome:local exon 3165495 3165545 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3163850 3165545 660 + . alignment_id 1 ; Query CbirOr199 ; Align 3163850 1 360 ; Align 3164320 122 279 ; Align 3164602 215 54 ; Align 3164984 234 201 ; Align 3165265 301 156 ; Align 3165495 353 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr199 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 643 Query range: 0 -> 369 Target range: 3157321 -> 3159017 1 : MetArgValLeuArgPheThrLeuLeuIleCysAlaPheAlaGlyCysTrpGlnPr : 19 |||!!!||||||!:!! !|||! !|||:!: ! !.!!:!!||||||!::! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 3157322 : ATGAGCGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTATCTGCC : 3157376 20 : oSerSerTrpThrSerLeuLeuLysHisIleIleTyrLysThrTyrAlaMetPheL : 38 | !|||||||||!!!! !!!!:!!... !:!:|||!!.! !|||!.!:::||| oHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheS 3157377 : CCATTCGTGGACAACACCGTTCGAAAGGTCTTTGTACAATATCTACGGGGtgttct : 3157433 39 : euGlySerAlaLeuCysIlePheSerIleSerGlnPheMetAsnIleMetLeuAsn : 56 ||| !! !.!! !:!!||||||.!.:!::!!:!! !:!!||| erPheLeuLeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIleAsn 3157434 : cctttcttcttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCAAC : 3157487 57 : ValGluAsnSerAspGluPheIleAspSerLeuTyrMetMetLeuThrValPheVa : 75 ||||||!:!..!|||!!:|||! |||:::... ::: !..!||||||:! ValGluSerGlnAspAspPheSerAspAsnPheSerValThrAlaValValPheLe 3157488 : GTGGAGAGCCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTTCT : 3157544 76 : lAlaSerTyrLysGlnValTyrMetTrpArgAspArgLysAsnIleMetMetIleI : 94 !.!!!!!!:!|||! ! !:!: ! ! ||| !|||.!!!!:.!.:!:| uThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuI 3157545 : CACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGA : 3157601 95 : leAsnValPheThrPheLysLeuPheAlaProCysGluSerTyrGluValThrIle : 112 ||:!!..!.!! ! !|||! !|||:!!||| !!:!!! ! ||| ! !||| leAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIle 3157602 : TCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATT : 3157655 113 : GlnArgLysPheGluLysIleThr{Ly} >>>> Target Intron 1 >>>> : 121 ::! !||||||||||||||||||{:!} 107 bp ArgAlaLysPheGluLysIleThr{Gl}++ + 3157656 : AGAGCGAAATTCGAGAAGATCACC{GA}gt.........................a : 3157789 122 : {s}AsnAsnThrLeuArgTyrLeuLeuLeuIleValIleAlaIleAlaSerMetI : 139 {!} ||||||:!! !!|||! ! |||::::::|||::: !! !!!: +{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleT 3157790 : g{A}TGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATAT : 3157843 140 : leMetMetSerValLeuThrGluLeuThrLysArgAsnLeuThrTyrLysAlaTrp : 157 !:!!! |||:!!|||! !!!:!!!!:!!!.|||!!.|||! !!:!::!|||||| yrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrp 3157844 : ACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGG : 3157897 158 : IleProPheAsnTyrSerSerProAlaValTyrPheLeuValTyrIleHisGlnLe : 176 ||||||!:!:!!|||||| !! !! !!:!!!:!.!!|||..!! !:!!|||||| IleProTyrAspTyrSerProAlaProIlePheIleLeuThrSerValHisGlnAl 3157898 : ATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTCCGTCCATCAAGC : 3157954 177 : uIleGlyMetAlaThrSerGlyIleValAsnValAlaCysGluSerLeuIlePheG : 195 !|||!.! !.!!! !!!! !!! ! !!.!|||.!! !!:!!!||| ! !| aIleAlaSerThrIleCysCysThrSerThrValThrValAspThrLeuTyrThrG 3157955 : TATAGCCTCGACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTATACACTG : 3158011 196 : lyLeuLeuLeuGlnIleCysGlyGlnLeuGluIleLeuGluHisArgLeuThrLys : 213 ||||||||:!!.!.|||! ! !!|||!!!|||||||||||||||||||||! !!!. lyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsn 3158012 : GCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAAC : 3158065 214 : Leu<->ValHisAspGluGlyIleIleGlyAspCysIleLeuHisHisAsnLeuIl : 231 :!! ..!.!..!.!!:! ! !:!: !.!.||| !! !||||||:!!! !|| ValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIl 3158066 : GTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTAT : 3158122 232 : ePhe{Gl} >>>> Target Intron 2 >>>> {u}TyrAlaTyrLysValA : 239 |!:!{:!} 325 bp {!}!:!:!! ! ||||||| eTyr{Gl}++ ++{n}PheSerLysLysValA 3158123 : ATAC{CA}gt.........................ag{A}TTTTCGAAAAAGGTGA : 3158471 240 : snAsnMetPheAlaLysIleIleAlaLeuGlnPheAlaValSerMetLeuValVal : 257 ||.!. ||| ! !|||:!: !! !||||||..!:!!||||||! !|||:!! snGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIle 3158472 : ACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATC : 3158525 258 : CysSerAsnLeuTyrArgLeuAlaMetValThrAspTyrValThrPheIleSerLe : 276 |||! !||||||||||||:!!.!!..!:!!! ! ! ... |||:::...:: CysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIl 3158526 : TGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaat : 3158582 277 : uThrThrTyrThrCysAlaIleLeuThrGlnIlePheIleTyrCysTrpPheGlyA : 295 : ! !|||:!!! !..!! !:!!|||||||||||| !|||||||||!:!|||| eIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyA 3158583 : caTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGTTGGTACGGCA : 3158639 296 : snGluValLysIleLys >>>> Target Intron 3 >>>> SerLeuHisL : 304 ||||||||||| !||| 80 bp ||||||!!.| snGluValLysAspLys++ ++SerLeuGlnL 3158640 : ACGAAGTGAAAGATAAGgt.........................agAGCCTCCAAC : 3158746 305 : euAlaAsnLysIleTyrAsnMetGluTrpLeuThrLeuSerAsnSerCysLysLys : 322 || !! !!! !|||!:!:!!! !!:||| !:!!|||!:!|||!:! !! !:! euProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArg 3158747 : TTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGA : 3158800 323 : GlyLeuLeuMetIleMetLysArgAlaThrValProIleGluPheSerSerAlaTy : 341 !.!||||||!!:!!:|||!:!||||||..! !||||||||||||!!!||| !:! AlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheThrSerIleHi 3158801 : GCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCA : 3158857 342 : rValIleThrMetAsnLeuAspSerPheAlaAla >>>> Target Intron 4 : 353 !|||:!!:!!:!!||||||!!:|||||| !||| 74 bp sValValSerValAsnLeuGluSerPheMetAla++ 3158858 : CGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt.................... : 3158895 354 : >>>> LeuLeuLysMetSerTyrSerAlaPheAsnLeuLeuHisGlnThrGlnG : 369 :!!:!!|||! :!!|||||||||||||||:!!:!!!!.|||!:!:!!: ++ValIleLysThrAlaTyrSerAlaPheAsnMetIleGlnGlnSerLysG 3158896 : .....agGTAATAAAAACTGCGTACTCCGCGTTCAACATGATCCAACAAAGCAAAC : 3159015 370 : lu : 369 !! ln 3159016 : AA : 3159017 vulgar: CbirOr199 0 369 . KQ414646.1 3157321 3159017 + 643 M 120 360 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 93 279 G 0 3 M 18 54 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 67 201 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157322 3159017 643 + . gene_id 2 ; sequence CbirOr199 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3157322 3157683 . + . KQ414646.1 exonerate:protein2genome:local exon 3157322 3157683 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3157684 3157685 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3157684 3157790 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3157789 3157790 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3157791 3158129 . + . KQ414646.1 exonerate:protein2genome:local exon 3157791 3158129 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158130 3158131 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158130 3158454 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3158453 3158454 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158455 3158656 . + . KQ414646.1 exonerate:protein2genome:local exon 3158455 3158656 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158657 3158658 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158657 3158736 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3158735 3158736 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158737 3158892 . + . KQ414646.1 exonerate:protein2genome:local exon 3158737 3158892 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158893 3158894 . + . intron_id 4 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158893 3158966 . + . intron_id 4 KQ414646.1 exonerate:protein2genome:local splice3 3158965 3158966 . + . intron_id 3 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158967 3159017 . + . KQ414646.1 exonerate:protein2genome:local exon 3158967 3159017 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157322 3159017 643 + . alignment_id 2 ; Query CbirOr199 ; Align 3157322 1 360 ; Align 3157792 122 279 ; Align 3158074 215 54 ; Align 3158456 234 201 ; Align 3158737 301 156 ; Align 3158967 353 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr199 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 409 Query range: 126 -> 366 Target range: 3155415 -> 3156416 127 : TyrLeuLeuLeuIleValIleAlaIleAlaSerMetIleMetMetSerValLeuTh : 145 |||! ! !:!!:!:||| !:!!! !.!! !! :!: .!..!!!.!||| TyrTyrAlaIleLeuValGluSerThrValMetThrLeuSerPheGlyAlaLeuLe 3155416 : TATTACGCGATTCTGGTCGAATCGACGGTGATGACTTTGTCTTTCGGTGCACTGTT : 3155470 146 : rGluLeuThrLysArgAsnLeuThrTyrLysAlaTrpIleProPheAsnTyrSerS : 164 !:!!! ! !..!||| !||| !!|||::! !|||:!!|||! !||||||!!! uLysProGluSerArgProLeuProTyrArgIleTrpLeuProCysAsnTyrThrP 3155471 : GAAACCAGAATCACGTCCTTTACCGTATCGAATTTGGCTACCTTGCAATTACACCC : 3155527 165 : erProAlaValTyrPheLeuValTyrIleHisGlnLeuIleGlyMetAlaThrSer : 182 !! ! !..!|||! !! !:!!|||! !! !|||! !:!:!.!:!:||| !||| roLeuIleThrTyrCysSerIleTyrThrLeuGlnCysValAlaLeuAlaLeuSer 3155528 : CGTTAATTACTTACTGTTCGATTTACACTCTCCAATGTGTGGCACTCGCTCTAAGC : 3155581 183 : GlyIleValAsnValAlaCysGluSerLeuIlePheGlyLeuLeuLeuGlnIleCy : 201 !.!!!::!!:!!|||||||||!!:|||||||||! !||||||||||||!!.! !! AlaMetMetHisValAlaCysAspSerLeuIleCysGlyLeuLeuLeuHisThrTy 3155582 : GCTATGATGCACGTCGCCTGCGACAGTTTGATCTGCGGCCTGCTGTTACACACTTA : 3155638 202 : sGlyGlnLeuGluIleLeuGluHisArgLeuThrLysLeuValHisAspGluGlyI : 220 !||||||:!!|||||||||! !||||||! ::: ...:::|||...! rGlyGlnIleGluIleLeuGlyCysArgLeuLysThrIleLysGluAsnGluSerL 3155639 : CGGCCAGATCGAGATCCTCGGTTGTCGTCTGAaaacgataaaagaaaacgagagtA : 3155695 221 : leIleGlyAsp<->CysIleLeuHisHisAsnLeuIlePhe{Gl} >>>> Targ : 233 ! ..! ! |||:!!! !:!!:!!|||||||||!:!{..} ysThrSerLysLeuCysValArgTyrAsnAsnLeuIleTyr{Ar}++ 3155696 : AGACGTCCAAGTTGTGCGTTCGTTACAACAACCTTATCTAT{CG}gt......... : 3155741 234 : et Intron 1 >>>> {u}TyrAlaTyrLysValAsnAsnMetPheAlaLysIl : 245 69 bp {!}!:!.!! !! !:!!|||.!....|||! !! ! ++{g}PheThrAlaMetIleAsnGluGlnPheGluMetAl 3155742 : ................ag{A}TTCACCGCTATGATAAACGAGCAATTCGAGATGGC : 3155842 246 : eIleAlaLeuGlnPheAlaValSerMetLeuValValCysSerAsnLeuTyrArgL : 264 ||| ! !|||||||||||||||! !|||!.!:!!|||! !|||||||||! !| aIlePheThrGlnPheAlaValSerThrLeuAlaIleCysPheAsnLeuTyrLeuL 3155843 : GATTTTCACTCAATTCGCGGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTAT : 3155899 265 : eu<->AlaMetValThrAspTyrValThrPheIleSerLeuThrThrTyrThrCys : 281 || !.! ! !..! :!!! !!:!:!:..!:!!! !! !|||!:! !! euThrGlySerAspValThrProIleArgTyrValGluIleIleMetTyrSerSer 3155900 : TAACAGGATCAGATGTGACGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGT : 3155953 282 : AlaIleLeuThrGlnIlePheIleTyrCysTrpPheGlyAsnGluValLysIleLy : 300 ..!!!:|||||||||||||||||||||||||||!:!|||||||||||||||:!:|| CysMetLeuThrGlnIlePheIleTyrCysTrpTyrGlyAsnGluValLysLeuLy 3155954 : TGCATGCTCACGCAAATATTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAA : 3156010 301 : s >>>> Target Intron 2 >>>> SerLeuHisLeuAlaAsnLysIleTy : 309 | 73 bp ||||||.!.:!!:!!|||! !|||!: s++ ++SerLeuGluIleSerAsnMetIlePh 3156011 : Ggt.........................agAGCCTCGAGATTTCTAATATGATTTT : 3156110 310 : rAsnMetGluTrpLeuThrLeuSerAsnSerCysLysLysGlyLeuLeuMetIleM : 328 !:!!:!:!!:||| ! !!!!!..!!!.:!! |||::!..!:!!|||! !!:| eHisLeuAspTrpThrProPheAspLysAlaThrLysArgAsnIleLeuThrMetM 3156111 : TCACCTCGACTGGACACCGTTCGATAAAGCTACAAAACGAAATATACTAACTATGA : 3156167 329 : etLysArgAlaThrValProIleGluPheSerSerAlaTyrValIleThrMetAsn : 346 ||! !||||||:!! !|||||||||.!!! !|||!.! !|||:!!:!!:!!||| etMetArgAlaSerSerProIleGluIleIleSerValArgValLeuSerValAsn 3156168 : TGATGCGTGCGTCGTCGCCAATTGAAATCATCAGCGTTCGTGTGCTCTCCGTGAAT : 3156221 347 : LeuAspSerPheAlaAla >>>> Target Intron 3 >>>> LeuLeuLys : 355 ||||||||||||!.!||| 133 bp ||||||||| LeuAspSerPheValAla++ ++LeuLeuLys 3156222 : CTCGATTCGTTCGTCGCTgt.........................agTTGCTGAAA : 3156381 356 : MetSerTyrSerAlaPheAsnLeuLeuHisGln : 366 ! ||||||||||||!:!|||:!!|||!!.!:: ThrSerTyrSerAlaTyrAsnValLeuGlnArg 3156382 : ACTTCTTACTCGGCGTACAACGTTCTCCAACGC : 3156416 vulgar: CbirOr199 126 366 . KQ414646.1 3155415 3156416 + 409 M 97 291 G 0 3 M 9 27 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 31 93 G 0 3 M 36 108 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 129 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155416 3156416 409 + . gene_id 3 ; sequence CbirOr199 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3155416 3155738 . + . KQ414646.1 exonerate:protein2genome:local exon 3155416 3155738 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3155739 3155740 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3155739 3155807 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3155806 3155807 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3155808 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155808 3156012 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156013 3156014 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156013 3156085 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3156084 3156085 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156086 3156241 . + . KQ414646.1 exonerate:protein2genome:local exon 3156086 3156241 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156242 3156243 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156242 3156374 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3156373 3156374 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156375 3156416 . + . KQ414646.1 exonerate:protein2genome:local exon 3156375 3156416 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155416 3156416 409 + . alignment_id 3 ; Query CbirOr199 ; Align 3155416 127 291 ; Align 3155710 224 27 ; Align 3155809 234 93 ; Align 3155905 265 108 ; Align 3156086 301 156 ; Align 3156375 353 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr199 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 341 Query range: 115 -> 302 Target range: 3150017 -> 3150814 116 : PheGluLysIleThrLysAsnAsnThrLeuArgTyrLeuLeuLeuIleValIleAl : 134 !!.:!!! !:!! !!:!::: |||:!! !||| !:!!|||:!:! !:!!.! LeuGlnMetLeuTyrArgSerValThrIleTyrTyrThrIleLeuValGluLeuTh 3150018 : TTACAGATGCTTTACAGGTCGGTGACGATTTACTACACGATTCTGGTGGAACTCAC : 3150072 135 : aIleAlaSerMetIleMetMetSerValLeuThrGluLeuThrLysArgAsnLeuT : 153 !:!! !!!!||||||:!: |||:!!||| !!!:!!!!.!:!!|||.!.|||. rValLeuCysMetIleLeuSerSerLeuLeuGlyAspPheAsnGluArgGluLeuA 3150073 : GGTCCTCTGTATGATCCTCTCTTCGTTGCTCGGCGACTTTAACGAGCGGGAACTGG : 3150129 154 : hrTyrLysAlaTrpIleProPheAsnTyrSerSerProAlaValTyrPheLeuVal : 171 !!|||!:!||||||:!:||||||:!!|||||| !|||.!! !|||!:!:!!!.! laTyrArgAlaTrpLeuProPheAspTyrSerLeuProThrTyrTyrTyrIleAla 3150130 : CGTACAGAGCCTGGCTGCCCTTCGATTACTCTCTGCCAACTTACTATTACATCGCG : 3150183 172 : TyrIleHisGlnLeuIleGlyMetAlaThrSerGlyIleValAsnValAlaCysGl : 190 |||:!!||||||:!!:!!!.!:!! ! !!!!..!:!! !||||||||||||!! TyrValHisGlnIleValAlaLeuIleGlyThrSerLeuSerAsnValAlaCysAs 3150184 : TACGTTCATCAGATCGTCGCGCTGATCGGTACGTCGCTTTCGAACGTCGCCTGCGA : 3150240 191 : uSerLeuIlePheGlyLeuLeuLeuGlnIleCysGlyGlnLeuGluIleLeuGluH : 209 : !:!!|||! !|||||||||:!!!!. !|||||||||! !|||||||||:!!| pValIleIleCysGlyLeuLeuValHisAlaCysGlyGlnGlnGluIleLeuLysH 3150241 : CGTGATCATCTGCGGGTTGCTCGTTCACGCTTGCGGCCAACAGGAGATTCTCAAGC : 3150297 210 : isArgLeuThrLysLeuValHisAspGlu<->GlyIleIleGlyAspCysIleLeu : 226 |||||:!!! !:!!:!!..!!!.!!::!! !! !|||||| ! !:!!! ! isArgMetLysGluMetThrGlnGluGlnArgProAsnIleGlyLysIleValArg 3150298 : ACAGAATGAAGGAGATGACGCAGGAACAGAGGCCGAATATCGGGAAAATCGTTCGT : 3150351 227 : HisHisAsnLeuIlePhe{Gl} >>>> Target Intron 1 >>>> {u}Ty : 234 !|||:!!! !:!!!:!{! } 230 bp {!}|| PheHisAspTyrLeuTyr{Gl}++ ++{y}Ty 3150352 : TTCCACGATTATCTTTAC{GG}gt.........................ag{G}TA : 3150605 235 : rAlaTyrLysValAsnAsnMetPheAlaLysIleIleAlaLeuGlnPheAlaValS : 253 |!.!!:!! !:!!.!..!.! !||| ! !||||||!.!:!!|||.!! ! !| rValPheThrMetGlnGluLysPheArgTrpIleIleGlyValGlnLeuLeuSerS 3150606 : CGTTTTCACGATGCAAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTTATCGA : 3150662 254 : erMetLeuValValCysSerAsnLeuTyrArgLeuAlaMetValThrAspTyrVal : 271 ||! !||||||||||||! !! !||||||..!||||||! ..! !! ! ! erThrLeuValValCysPheIleLeuTyrGluLeuAlaAsnThrProProIleSer 3150663 : GCACGCTGGTAGTGTGTTTCATCCTGTACGAATTGGCGAACACGCCTCCAATCAGC : 3150716 272 : Thr<->PheIleSerLeuThrThrTyrThrCysAlaIleLeuThrGlnIlePheIl : 289 :!! !:!:!:..!!!!..! !||| !..!..!!!::!!||||||||||||.! SerLysTyrLeuGlnPheValLeuTyrLeuAlaCysMetMetThrGlnIlePhePh 3150717 : TCCAAGTACCTGCAATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATCTTCTT : 3150773 290 : eTyrCysTrpPheGlyAsnGluValLysIleLysSerLeu : 302 !|||||||||!:!|||.!.:!!:!!|||:!:||| !||| eTyrCysTrpTyrGlyGluGlnLeuLysLeuLysValLeu 3150774 : TTACTGCTGGTACGGCGAGCAGTTGAAACTGAAGGTACTG : 3150814 vulgar: CbirOr199 115 302 . KQ414646.1 3150017 3150814 + 341 M 103 309 G 0 3 M 14 42 S 0 2 5 0 2 I 0 226 3 0 2 S 1 1 M 39 117 G 0 3 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150018 3150814 341 + . gene_id 4 ; sequence CbirOr199 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3150018 3150373 . + . KQ414646.1 exonerate:protein2genome:local exon 3150018 3150373 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150374 3150375 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150374 3150603 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150602 3150603 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150604 3150814 . + . KQ414646.1 exonerate:protein2genome:local exon 3150604 3150814 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150018 3150814 341 + . alignment_id 4 ; Query CbirOr199 ; Align 3150018 116 309 ; Align 3150330 219 42 ; Align 3150605 234 117 ; Align 3150725 273 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr199 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 279 Query range: 118 -> 300 Target range: 3180041 -> 3180667 119 : IleThrLysAsnAsnThrLeuArgTyrLeuLeuLeuIleValIleAlaIleAlaSe : 137 :!! !!:!!!.|||.!!:!!|||||| !:!!:!!:!!! !!!::!!:!!||||| LeuAspArgLysAsnAlaValArgTyrThrMetValValGluMetSerValAlaSe 3180042 : CTCGACAGGAAAAACGCTGTCAGATACACAATGGTAGTCGAGATGTCGGTCGCCTC : 3180096 138 : rMetIleMetMetSerValLeuThrGluLeuThrLysArgAsnLeuThrTyrLysA : 156 |! |||:!:! |||:!!:!!|||.!.!!! ! ! !!!..|||||||||!:!! rThrIleLeuAsnSerLeuValThrAsnPheGlnHisGlyArgLeuThrTyrArgG 3180097 : GACTATTTTAAACTCGTTAGTGACCAACTTTCAACACGGCAGACTAACCTACAGAG : 3180153 157 : laTrpIleProPheAsnTyrSerSerProAlaValTyrPheLeuValTyrIleHis : 174 .!|||.!!|||!:!:!!|||!!!!!! !!!.!:!!!:! |||..!||| !! lyTrpPheProTyrAspTyrThrThrAlaValLeuPheProLeuThrTyrAlaLeu 3180154 : GCTGGTTCCCTTACGATTACACGACCGCCGTACTTTTTCCATTGACATACGCTCTG : 3180207 175 : GlnLeuIleGlyMetAlaThrSerGlyIleValAsnValAlaCysGluSerLeuIl : 193 ||||||:!! !!:!! !..!! !..! :!!:!!|||:!! !!:! !|||.! GlnLeuLeuCysValLeuValTyrSerTrpIleHisValSerValAspIleLeuPh 3180208 : CAGCTATTATGCGTGCTCGTATATTCCTGGATCCACGTTTCAGTGGATATTCTCTT : 3180264 194 : ePheGlyLeuLeuLeuGlnIleCysGlyGlnLeuGluIleLeuGluHisArgLeuT : 212 !||||||||||||:!!|||:!:||| !!|||!!!!!:|||||| |||...! ePheGlyLeuLeuMetGlnLeuCysCysGlnPheAspIleLeuPheSerArgPheS 3180265 : CTTCGGACTGTTGATGCAACTGTGCTGTCAATTCGAcattctcttctctcgtttcA : 3180321 213 : hrLysLeuVal<->HisAspGluGlyIleIleGlyAspCysIleLeuHisHisAsn : 229 :!!..:!!..! .!.:!!:!!|||:!!:!! !! ||||||! !||||||:!! erSerIleThrSerGluAsnLysGlyValLeuArgArgCysIleArgHisHisAsp 3180322 : GTAGCATAACGTCGGAGAACAAGGGTGTTTTACGAAGATGCATTCGTCATCACGAC : 3180375 230 : LeuIlePhe{Gl} >>>> Target Intron 1 >>>> {u}TyrAlaTyrLy : 237 !|||!:!{..} 74 bp {.}! ||| ! ! ArgIleTyr{Ar}++ ++{g}LeuAlaGluIl 3180376 : AGAATTTAC{CG}gt.........................ag{T}TTAGCTGAAAT : 3180473 238 : sValAsnAsnMetPheAlaLysIleIleAlaLeuGlnPheAlaValSerMetLeuV : 256 !:!!|||:!!! .!. ! !! !!: ! !|||||| !! !|||.!.:!!| eMetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePheGlySerPheMetV 3180474 : AATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTTCGGAAGCTTTATGG : 3180530 257 : alValCysSerAsnLeuTyrArgLeuAlaMetValThrAspTyrValThr<->Phe : 273 ||:!!||| !!:!||| !!:!||| !! !.! ! ! ! !||| ||| alIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleLeuSerThrGluPhe 3180531 : TGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTCTCAGCACCGAATTC : 3180584 274 : IleSerLeuThrThrTyrThrCysAlaIleLeuThrGlnIlePheIleTyrCysTr : 292 :!!:!! !! ||| :::|||||| !|||! !|||:!!|||||||| LeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPheLeuTyrCysTr 3180585 : TTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGCTTTCTTTACTGTTG : 3180641 293 : pPheGlyAsnGluValLysIleLys : 300 |!:!||||||||||||!:!! ||| pTyrGlyAsnGluValArgThrLys 3180642 : GTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: CbirOr199 118 300 . KQ414646.1 3180041 3180667 + 279 M 97 291 G 0 3 M 17 51 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 39 117 G 0 3 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180042 3180667 279 + . gene_id 5 ; sequence CbirOr199 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3180042 3180388 . + . KQ414646.1 exonerate:protein2genome:local exon 3180042 3180388 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3180389 3180390 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3180389 3180462 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3180461 3180462 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3180463 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180463 3180667 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180042 3180667 279 + . alignment_id 5 ; Query CbirOr199 ; Align 3180042 119 291 ; Align 3180336 216 51 ; Align 3180464 234 117 ; Align 3180584 273 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr199 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 213 Query range: 122 -> 296 Target range: 3153117 -> 3153645 123 : AsnThrLeuArgTyrLeuLeuLeuIleValIleAlaIleAlaSerMetIleMetMe : 141 |||.!! ! !||| !! !!!!:!:! !||| !:!!!.! !:!: !!:! AsnAlaLysAlaTyrThrTyrPheLeuAspIleLeuValValValLeuTrpIleTh 3153118 : AACGCTAAGGCTTACACATATTTCCTGGACATCTTGGTAGTCGTTTTATGGATAAC : 3153172 142 : tSerValLeuThrGluLeuThrLysArgAsnLeuThrTyrLysAlaTrpIleProP : 160 ||| !!!!|||!!:! !! !:::|||...... ::::::..!|||:!!|||! rSerTyrPheThrAspTyrArgArgArgLysPheLysPheArgValTrpLeuProT 3153173 : ATCGTACTTCACGGACTACAGGcgcagaaaattcaaatttcgcgtCTGGTTACCTT : 3153229 161 : heAsnTyrSerSerProAlaValTyrPheLeuValTyrIleHisGlnLeuIleGly : 178 :!:!! !!!!!!!! ! !!|||!:! !|||:!!||| !!!.|||:!!:!! !! yrAspThrThrThrGlnProValPheThrLeuIleTyrCysGlnGlnIleValCys 3153230 : ACGACACTACTACACAACCTGTCTTCACTCTGATCTACTGTCAACAGATCGTCTGC : 3153283 179 : MetAlaThrSerGlyIleValAsnValAlaCysGluSerLeuIlePheGlyLeuLe : 197 ! ! ! !|||! !! !:!!|||||| !|||!!:!!!|||.!! !||||||:! ThrTrpTyrSerValAsnIleAsnValIleCysAspCysLeuPheSerGlyLeuMe 3153284 : ACGTGGTACAGCGTGAATATTAACGTCATTTGCGACTGCCTGTTCAGCGGCCTGAT : 3153340 198 : uLeuGlnIleCysGlyGlnLeuGluIleLeuGlu<-><->HisArgLeuThrLysL : 214 !:!!|||||||||..! |||..!! :!!:!! !..||| ! ! !| tIleGlnIleCysSerIleLeuArgLysMetLysProThrArgArgAsnCysValL 3153341 : GATACAGATTTGCTCAATCTTACGGAAGATGAAACCTACTCGGCGAAACTGTGTGC : 3153397 215 : euValHisAspGluGlyIleIleGlyAspCysIleLeuHisHisAsnLeuIlePhe : 232 ||||| ! !! !! !.!!.!.! ! ... ... !! euValThrIleIleArgTyrThrSerGlnSerArgGlnGluIleLysArgTyrVal 3153398 : TCGTCACCATAATCAGATATACAAGCCAGTCTCGacaagaaattaaacgatacgTT : 3153451 233 : GluTyrAlaTyrLysValAsnAsnMetPheAlaLysIleIleAlaLeuGlnPheAl : 251 !! ||| ! ! !||||||.!.! !.!!!.!!!.:!! ::!:!!|||||||| ***LeuAlaGlnIleValAsnGluLysLeuGlyAsnValSerSerIleGlnPheAl 3153452 : TGATTGGCGCAAATAGTGAACGAGAAGCTTGGAAATGTCTCGAGTATACAGTTCGC : 3153508 252 : aValSerMetLeuValValCysSerAsnLeuTyrArgLeuAlaMetValThrAspT : 270 |:!!|||! !!.!:!!|||! !||||||||||||:!!:!!:!!:!! ! ! aIleSerThrGlyAlaIleCysPheAsnLeuTyrArgMetSerValIleGluLeuG 3153509 : GATAAGCACAGGAGCGATATGCTTCAATCTCTATCGAATGTCGGTGATAGAACTCG : 3153565 271 : yrValThrPheIleSerLeuThrThrTyrThrCysAlaIleLeuThrGlnIlePhe : 288 ! !! !|||:!:..! ! !||| !||| ..!:!!|||.!!||||||||| lyProLysPheValGluAlaLeuThrIleThrValCysLeuLeuAlaGlnIlePhe 3153566 : GTCCAAAGTTTGTGGAAGCGTTAACTATCACAGTATGCTTACTCGCGCAGATATTT : 3153619 289 : IleTyrCysTrpPheGlyAsnGlu : 296 !|||||||||!::||||||::: TyrTyrCysTrpTyrGlyAsnAsp 3153620 : TACTATTGTTGGTAcggtaacgat : 3153645 vulgar: CbirOr199 122 296 . KQ414646.1 3153117 3153645 + 213 M 86 258 G 0 6 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153118 3153645 213 + . gene_id 6 ; sequence CbirOr199 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153118 3153645 . + . KQ414646.1 exonerate:protein2genome:local exon 3153118 3153645 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153118 3153645 213 + . alignment_id 6 ; Query CbirOr199 ; Align 3153118 123 258 ; Align 3153382 209 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr199 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 231 -> 353 Target range: 3160720 -> 3162713 232 : PheGluTyrAlaTyrLysValAsnAsnMetPheAlaLysIleIleAlaLeuGlnPh : 250 |||..!!:!||| ! ! :!!||| ! !|||::!! ! !!:||| !||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3160721 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3160775 251 : eAlaValSerMetLeuValValCysSerAsnLeuTyrArgLeuAlaMetValThrA : 269 | !|||!!!! :!!..!:!!|||! !||||||!:!||||||.!!..!..!! !! eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3160776 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3160832 270 : spTyrValThrPheIleSerLeuThrThrTyrThrCysAlaIleLeuThrGlnIle : 287 ||| ! ! !!:!!:!!|||! ! !!!:!! ! !::!:!:!!!.!!|||||| alTyrSerGlnValLeuAlaLeuIleProPheMetValSerValPheAlaGlnIle 3160833 : TGTATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATA : 3160886 288 : PheIleTyrCysTrpPheGlyAsnGluValLysIleLysSerLeuHisLeuAlaAs : 306 ||| !! !||||||!:!|||||||||..!|||:!:||| !! ! !!! !.!!:! PheTyrCysCysTrpTyrGlyAsnGluThrLysValLysValArgAspGlnThrAs 3160887 : TTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGGTACGTGATCAAACAGA : 3160943 307 : nLysIleTyrAsnMetGluTrpLeuThrLeuSerAsn{S} >>>> Target In : 319 ! :::::::::::: |||! ! { } 1627 pPheLeuPheSerIlePheLeuSerPheLeuPheLeu{P}++ 3160944 : CTTCttattctcaattttcctctcgtttctgTTTCTA{C}gt.............. : 3160985 320 : tron 1 >>>> {er}CysLysLysGlyLeuLeuMetIleMetLysArgAlaThr : 332 bp {!!}..!|||::!..! !|||! !!:|||! !||||||:!! ++{ro}AlaLysArgAsnThrLeuThrMetMetMetArgAlaSer 3160986 : ...........ag{CT}GCTAAACGAAATACTCTAACCATGATGATGCGTGCATCG : 3162648 333 : ValProIleGluPheSerSerAlaTyrValIleThrMetAsnLeuAspSerPheAl : 351 !! !||||||.!!! !|||!.! !|||:!!:!!:!!|||||||||||||||!. SerLeuIleGluIleIleSerValArgValLeuSerValAsnLeuAspSerPheVa 3162649 : TCTCTGATCGAAATCATCAGCGTTCGTGTGCTCTCCGTGAATCTAGATTCGTTCGT : 3162705 352 : aAlaLeu : 353 !|||::: lAlaVal 3162706 : CGCTGtc : 3162713 vulgar: CbirOr199 231 353 . KQ414646.1 3160720 3162713 + 165 M 87 261 S 0 1 5 0 2 I 0 1623 3 0 2 S 1 2 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160721 3162713 165 + . gene_id 7 ; sequence CbirOr199 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3160721 3160982 . + . KQ414646.1 exonerate:protein2genome:local exon 3160721 3160982 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3160983 3160984 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3160983 3162609 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3162608 3162609 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3162610 3162713 . + . KQ414646.1 exonerate:protein2genome:local exon 3162610 3162713 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160721 3162713 165 + . alignment_id 7 ; Query CbirOr199 ; Align 3160721 232 261 ; Align 3162612 320 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr199 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 228 -> 300 Target range: 3178372 -> 3178591 229 : AsnLeuIlePheGluTyrAlaTyrLysValAsnAsnMetPheAlaLysIleIleAl : 247 |||...||| ...!:!.!! ! ! !||||||!.!:!!||| ! ! !!:||| AsnPheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePh 3178373 : aatttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTT : 3178427 248 : aLeuGlnPheAlaValSerMetLeuValValCysSerAsnLeuTyrArgLeuAlaM : 266 !|||||||||:!!:!!||| ! !|||:!!|||! !!:!:!!|||!:!:!!:!!! eLeuGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerT 3178428 : CCTGCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGA : 3178484 267 : etValThrAspTyr<->ValThrPheIleSerLeuThrThrTyrThrCysAlaIle : 283 !:!!!.! !:! :!!!.!|||:!!!!!! !.!!:!!||| !|||..!!!: hrIleAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMet 3178485 : CGATTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATG : 3178538 284 : LeuThrGlnIlePheIleTyrCysTrpPheGlyAsnGluValLysIleLys : 300 |||||||||:!:!:!:!!||||||||||||||||||||||||! !:!:||| LeuThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys 3178539 : CTCACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: CbirOr199 228 300 . KQ414646.1 3178372 3178591 + 165 M 42 126 G 0 3 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178373 3178591 165 + . gene_id 8 ; sequence CbirOr199 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178373 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178373 3178591 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178373 3178591 165 + . alignment_id 8 ; Query CbirOr199 ; Align 3178373 229 126 ; Align 3178502 271 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr199 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 231 -> 300 Target range: 3174931 -> 3175138 232 : PheGluTyrAlaTyrLysValAsnAsnMetPheAlaLysIleIleAlaLeuGlnPh : 250 |||..!!:!||| ! ! :!!||| ! !|||::!! ! !!:||| !||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3174932 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3174986 251 : eAlaValSerMetLeuValValCysSerAsnLeuTyrArgLeuAlaMetValThrA : 269 | !|||!!!! :!!..!:!!|||! !||||||!:!||||||.!!..!..!! !! eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3174987 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3175043 270 : spTyrValThrPheIleSerLeuThrThrTyrThrCysAlaIleLeuThrGlnIle : 287 ||| ! ! !!:!!:!!|||! ! !!!:!! ! !::!:!:!!!.!!|||||| alTyrSerGlnValLeuAlaLeuIleProPheMetValSerValPheAlaGlnIle 3175044 : TGTATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATA : 3175097 288 : PheIleTyrCysTrpPheGlyAsnGluValLysIleLys : 300 ||| !! !||||||!:!|||||||||..!|||:!:||| PheTyrCysCysTrpTyrGlyAsnGluThrLysValLys 3175098 : TTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG : 3175138 vulgar: CbirOr199 231 300 . KQ414646.1 3174931 3175138 + 141 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174932 3175138 141 + . gene_id 9 ; sequence CbirOr199 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174932 3175138 . + . KQ414646.1 exonerate:protein2genome:local exon 3174932 3175138 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3174932 3175138 141 + . alignment_id 9 ; Query CbirOr199 ; Align 3174932 232 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr199 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 123 -> 236 Target range: 3160062 -> 3160407 124 : ThrLeuArgTyrLeuLeuLeuIleValIleAlaIleAlaSerMetIleMetMetSe : 142 :!!:!! !||| !:!!! !! !|||:!:::! .!!.!!:!: |||:!!|| SerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValTrpMetLeuSe 3160063 : TCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTATGGATGTTGTC : 3160117 143 : rValLeuThrGluLeuThrLysArgAsnLeuThrTyrLysAlaTrpIleProPheA : 161 |!.!:!!|||! !!!!! !! |||.!.||| !! !::!!.!|||:!!||||||: rAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrpLeuProPheA 3160118 : GGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGGTTACCTTTCG : 3160174 162 : snTyr<->SerSerProAlaValTyrPheLeuValTyrIleHisGlnLeuIleGly : 178 !!||| :!!!!! !!.!:!!!:! !|||..!||| !:!!|||!!!:!! ! spTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGlnPheValThr 3160175 : ATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAGTTTGTAACT : 3160228 179 : MetAlaThrSerGlyIleValAsnValAlaCysGluSerLeuIlePheGlyLeuLe : 197 :!! ! !! ! !! !!.!! !:!!!.! !!!:!:!|||.!! !|||||||| LeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheSerGlyLeuLe 3160229 : CTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCAGCGGACTGTT : 3160285 198 : uLeuGlnIleCysGlyGlnLeuGluIleLeuGluHisArgLeuThrLysLeuValH : 216 |:!!!!.|||! ! !!|||!!!|||||||||:!!|||||||||! !!..:!! !! uIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysSerIleLysP 3160286 : GATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGAGCATTAAAC : 3160342 217 : isAsp<->GluGlyIleIleGlyAspCysIleLeuHisHisAsnLeuIlePheGlu : 233 !||| ||| ! ! !.!.||| !!!!|||||| !!! !|||!:!:!! roAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrArgIleTyrLys 3160343 : CTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGCATATACAAG : 3160396 234 : TyrAlaTyr : 236 !:!...||| PheValTyr 3160397 : TTTgtctac : 3160407 vulgar: CbirOr199 123 236 . KQ414646.1 3160062 3160407 + 138 M 39 117 G 0 3 M 55 165 G 0 3 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160063 3160407 138 + . gene_id 10 ; sequence CbirOr199 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160063 3160407 . + . KQ414646.1 exonerate:protein2genome:local exon 3160063 3160407 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160063 3160407 138 + . alignment_id 10 ; Query CbirOr199 ; Align 3160063 124 117 ; Align 3160183 163 165 ; Align 3160351 218 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr199 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 0 -> 118 Target range: 3159620 -> 3159974 1 : MetArgValLeuArgPheThrLeuLeuIleCysAlaPheAlaGlyCysTrpGlnPr : 19 |||!.!..!|||!:!!!.:!!||| !! !! .!!.!!..!|||! ! ::!|| MetHisThrLeuGlnLeuSerLeuLysThrLeuThrIleCysGlyTyrIleArgPr 3159621 : ATGCACACGTTGCAATTGTCGTTGAAAACTTTGACGATTTGCGGCTACATAAGGCC : 3159675 20 : oSerSerTrpThrSerLeuLeuLysHisIleIleTyrLysThrTyrAlaMetPheL : 38 |!!!||||||! !|||! ! ! ! ! :!!:!!|||!!...!:!!.!!:!: !: oThrSerTrpLysSerProGlyLeuLysLeuLeuTyrAsnValHisThrValThrV 3159676 : AACATCGTGGAAGTCACCGGGGCTAAAGCTTCTCTATAACGTACACACGGTTACTG : 3159732 39 : euGlySerAlaLeuCysIlePheSerIleSerGlnPheMetAsnIleMetLeuAsn : 56 !!! ! !!.!||| !!! |||! !:!!:!!|||.!.:!::::|||:::...||| alValValValLeuSerThrPhePheValAlaGlnIleLeuAspIleIlePheAsn 3159733 : TAGTGGTAGTTCTTAGCACGTTTTTCGTCGCCCAGATATTggacattattttcaac : 3159786 57 : ValGluAsnSerAspGluPheIleAspSerLeuTyrMetMetLeuThrValPheVa : 75 |||||||||..!|||||||||! !|||!:!!!!! !!!:! !! ! !|||.!. ValGluAsnGlnAspGluPheSerAspAsnPheCysIleThrCysCysValMetAs 3159787 : gtgGAGAATCAAGACGAGTTTAGCGACAATTTCTGCATAACGTGCTGCGTGATGAA : 3159843 76 : lAlaSerTyrLysGlnValTyrMetTrpArgAspArgLysAsnIleMetMetIleI : 94 !::! ! ||| ! ! !:!! !! !! |||:!!! |||...! :!!| nSerLeuGlyLysLeuTyrSerLeuLeuIleGlyArgGluMetIleGlnAsnLeuI 3159844 : CAGCCTTGGAAAGTTGTACAGCTTGCTGATAGGACGAGAAATGATCCAAAATTTAA : 3159900 95 : leAsnValPheThrPheLysLeuPheAlaProCysGluSerTyrGluValThrIle : 112 ||:!! !.!. ! ! ! ! !.!! !|||! !!:..! ||| ! !||| leAspSerLeuGlnSerAspProLeuArgProLeuAspGluValGluAsnGluIle 3159901 : TAGACTCGCTACAAAGTGACCCTCTTAGGCCGTTGGACGAAGTGGAGAATGAAATT : 3159954 113 : GlnArgLysPheGluLys : 118 !:! !!:! !|||||| ArgLeuArgHisGluLys 3159955 : CGATTGAGACACGAGAAG : 3159974 vulgar: CbirOr199 0 118 . KQ414646.1 3159620 3159974 + 117 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3159621 3159974 117 + . gene_id 11 ; sequence CbirOr199 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3159621 3159974 . + . KQ414646.1 exonerate:protein2genome:local exon 3159621 3159974 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3159621 3159974 117 + . alignment_id 11 ; Query CbirOr199 ; Align 3159621 1 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr194 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 415 Query range: 139 -> 366 Target range: 3164373 -> 3165536 140 : LeuThrThrLeuPheIleAsnPheArgArgGlyAspLeuAlaTyrArgGluTrpLe : 158 :!!! !:!!|||!!.! !:!!|||!!!!!! !! ! ||| !!:!|||! !||||| ValArgSerLeuLeuThrAspPheSerSerArgLysLeuMetPheArgAlaTrpLe 3164374 : GTGAGATCGCTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGCATGGTT : 3164428 159 : uProTyrGluTyrSerSerGlyIleIleTyrTyrPheThrTyrPheArgGlnLeuV : 177 |||||||!!:|||||| !!!.! !|||!:! !.!!|||!:! !!!.!||| !: uProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAlaI 3164429 : ACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTA : 3164485 178 : alSerLeuThrAlaAlaSerIleValAsnValAlaCysAspCysMetIleCysGly : 195 !!:!! !||| !..!!!!! ! !!:!|||.!! |||! !:!: ! !||| leAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGly 3164486 : TAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGC : 3164539 196 : LeuPheLeuHisIleCysCysGlnIleAspIleLeuLysCysArgLeuArgLysCy : 214 |||!!.:!!:!!|||! !||||||.!!!!:||||||:!! !|||||||||!!. LeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnVa 3164540 : TTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGT : 3164596 215 : sLeuArgAsnArgAsnAsp<->LeuSerGluCysValCysGlnHisGluSerIleT : 232 ! !! !.!.!:!:!!||| :!!!.!:!!|||!.! !!.|||!!: !!|||| lLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIleT 3164597 : TAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTATAT : 3164653 233 : yr{Ly} >>>> Target Intron 1 >>>> {s}PheAlaTyrMetIleAsn : 239 ||{:!} 325 bp {!}|||:!! ! ! !:!:||| yr{Gl}++ ++{n}PheSerLysLysValAsn 3164654 : AC{CA}gt.........................ag{A}TTTTCGAAAAAGGTGAAC : 3164999 240 : GluLysPheArgValIleIleAlaValGlnPheAlaValSerThrLeuValLeuCy : 258 |||:!!|||!:!:!!|||:!: ! !||||||..!:!!|||! !! !|||:!!|| GluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIleCy 3165000 : GAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTG : 3165056 259 : sSerSerMetPheGlnLeuAlaArgMetSerMetAsnAlaGluValValProLeuL : 277 |! !!:!:!:!:!!:!:!!.!!!:!!!:!.!|||:!:...::: ||| :::: sPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIleI 3165057 : CTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaatca : 3165113 278 : euLeuTyrThrIleCysMetCysLeuGlnIleLeuIleTyrCysTrpTyrGlyAsn : 295 !!||||||:!!.!!|||! ! !||||||!!! !|||||||||||||||||| leLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsn 3165114 : TACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGGCAAC : 3165167 296 : GluValLysLeuLys >>>> Target Intron 2 >>>> SerIleGlnLeu : 304 |||||||||! !||| 80 bp |||:!!|||||| GluValLysHisLys++ ++SerLeuGlnLeu 3165168 : GAAGTGAAACATAAGgt.........................agAGCCTCCAACTT : 3165274 305 : AlaAspAspIlePheGluMetAspTrpIleAlaSerAspLysGlyThrLysGluAs : 323 !! !! ||||||.!.! ||||||! :!!! !:!!!!...!..!! ..! ProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArgAl 3165275 : CCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGAGC : 3165331 324 : nLeuIleMetIleMetAsnArgSerLeuValProIleAspIleSerThrAlaHisI : 342 |||:!!!!:!!:|||!..|||:!!:!! !||||||!!:.!!!!!!:! !|||: aLeuLeuIleMetMetArgArgAlaValArgProIleGluPheThrSerIleHisV 3165332 : ACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCACG : 3165388 343 : leLeuThrValAsnLeuAspSerPheValLys >>>> Target Intron 3 > : 353 !!:!!:!!|||||||||!!:||||||:!! ! 74 bp alValSerValAsnLeuGluSerPheMetAla++ 3165389 : TTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt...................... : 3165423 354 : >>> LeuLeuLysAlaSerTyrSerAlaTyrSerIleLeuGlnGln : 366 :!!:!!|||.!!||||||||||||!:!!:!!!::!!|||||| ++ValIleLysThrSerTyrSerAlaPheAsnMetIleGlnGln 3165424 : ...agGTAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAACAA : 3165536 vulgar: CbirOr194 139 366 . KQ414646.1 3164373 3165536 + 415 M 81 243 G 0 3 M 12 36 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 67 201 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164374 3165536 415 + . gene_id 1 ; sequence CbirOr194 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3164374 3164657 . + . KQ414646.1 exonerate:protein2genome:local exon 3164374 3164657 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164658 3164659 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164658 3164982 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3164981 3164982 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164983 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164983 3165184 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165185 3165186 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165185 3165264 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3165263 3165264 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165265 3165420 . + . KQ414646.1 exonerate:protein2genome:local exon 3165265 3165420 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165421 3165422 . + . intron_id 3 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165421 3165494 . + . intron_id 3 KQ414646.1 exonerate:protein2genome:local splice3 3165493 3165494 . + . intron_id 2 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165495 3165536 . + . KQ414646.1 exonerate:protein2genome:local exon 3165495 3165536 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164374 3165536 415 + . alignment_id 1 ; Query CbirOr194 ; Align 3164374 140 243 ; Align 3164620 221 36 ; Align 3164984 234 201 ; Align 3165265 301 156 ; Align 3165495 353 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr194 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 385 Query range: 120 -> 364 Target range: 3180047 -> 3180946 121 : GlnThrAsnAlaLysValTyrThrValMetIleGluThrThrCysAlaCysMetAs : 139 ::!! !|||||| !||||||:!!:!::!!|||! !:!! !|||! ! ! ArgLysAsnAlaValArgTyrThrMetValValGluMetSerValAlaSerThrIl 3180048 : AGGAAAAACGCTGTCAGATACACAATGGTAGTCGAGATGTCGGTCGCCTCGACTAT : 3180102 140 : nLeuThrThrLeuPheIleAsnPheArgArgGlyAspLeuAlaTyrArgGluTrpL : 158 !|||!.!:!!||| ! ! !||||||!:!!.!||| |||.!!||||||! |||! eLeuAsnSerLeuValThrAsnPheGlnHisGlyArgLeuThrTyrArgGlyTrpP 3180103 : TTTAAACTCGTTAGTGACCAACTTTCAACACGGCAGACTAACCTACAGAGGCTGGT : 3180159 159 : euProTyrGluTyrSerSerGlyIleIleTyrTyrPheThrTyrPheArgGlnLeu : 176 !!||||||!!:|||!!!!!!!.!:!!:!!!:! !!.|||||| !! !|||||| heProTyrAspTyrThrThrAlaValLeuPheProLeuThrTyrAlaLeuGlnLeu 3180160 : TCCCTTACGATTACACGACCGCCGTACTTTTTCCATTGACATACGCTCTGCAGCTA : 3180213 177 : ValSerLeuThrAlaAlaSerIleValAsnValAlaCysAspCysMetIleCysGl : 195 :!!!!!:!! !!.! !||| :!!:!!|||:!! ||| !:!:.!!! !|| LeuCysValLeuValTyrSerTrpIleHisValSerValAspIleLeuPhePheGl 3180214 : TTATGCGTGCTCGTATATTCCTGGATCCACGTTTCAGTGGATATTCTCTTCTTCGG : 3180270 196 : yLeuPheLeuHisIleCysCysGlnIleAspIleLeuLysCysArgLeuArgLysC : 214 ||||!!.:!!!!.:!:|||||||||.!!||||||||| |||...!!!!.. yLeuLeuMetGlnLeuCysCysGlnPheAspIleLeuPheSerArgPheSerSerI 3180271 : ACTGTTGATGCAACTGTGCTGTCAATTCGAcattctcttctctcgtttcAGTAGCA : 3180327 215 : ysLeu<->ArgAsnArgAsnAspLeuSerGluCysValCysGlnHisGluSerIle : 231 ! ..!|||!:!..!! !||| !!..!|||:!! !!!!.|||!!:!!!||| leThrSerGluAsnLysGlyValLeuArgArgCysIleArgHisHisAspArgIle 3180328 : TAACGTCGGAGAACAAGGGTGTTTTACGAAGATGCATTCGTCATCACGACAGAATT : 3180381 232 : Tyr{Ly} >>>> Target Intron 1 >>>> {s}PheAlaTyrMetIleAs : 239 |||{::} 74 bp {:}!!.||| ! !!:!!:|| Tyr{Ar}++ ++{g}LeuAlaGluIleMetAs 3180382 : TAC{CG}gt.........................ag{T}TTAGCTGAAATAATGAA : 3180479 240 : nGluLysPheArgValIleIleAlaValGlnPheAlaValSerThrLeuValLeuC : 258 |!!:!...!.!:!:!!! !!: !!.!|||||| !! !||| !:!!|||:!!| nAspSerLeuGlnLeuThrMetPheAlaGlnPhePheGlySerPheMetValIleC 3180480 : CGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTTCGGAAGCTTTATGGTGATCT : 3180536 259 : ysSerSerMetPheGlnLeuAlaArgMetSer<->MetAsnAlaGluValValPro : 275 || !|||:!!.!!|||||| !!.! ..! :!:!:!.!!||| !!:!! !! ysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleLeuSerThrGluPheLeuAla 3180537 : GCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTCTCAGCACCGAATTCTTAGCG : 3180590 276 : LeuLeuLeuTyrThrIleCysMetCysLeuGlnIleLeuIleTyrCysTrpTyrGl : 294 !:::...||| ::: ||||||! !!!!:!!|||||||||||||| ThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPheLeuTyrCysTrpTyrGl 3180591 : ACGAtattttatctgagctcgatACTGCTGCAGAGCTTTCTTTACTGTTGGTACGG : 3180647 295 : yAsnGluValLysLeuLys >>>> Target Intron 2 >>>> SerIleGl : 303 ||||||||||!:! !||| 87 bp |||:!!.! yAsnGluValArgThrLys++ ++SerValAs 3180648 : AAACGAAGTGAGAACGAAGgt.........................agAGCGTAGA : 3180761 304 : nLeuAlaAspAspIlePheGluMetAspTrpIleAlaSerAspLysGlyThrLysG : 322 .|||||||||! !!:|||.!.:!:||||||! !.!! !..!:!! ! !!:!: pLeuAlaAspValMetPheHisValAspTrpThrGlyLeuSerGluLysGlyArgL 3180762 : TCTGGCAGACGTGATGTTTCACGTAGATTGGACGGGATTGAGCGAGAAAGGGAGGA : 3180818 323 : luAsnLeuIleMetIleMetAsnArgSerLeuValProIleAspIleSerThrAla : 340 !!! !:!!:!!.!. |||!..|||!!!! ! !|||||| .!!..!!:!!.! ysIleIleLeuPheAlaMetThrArgThrArgSerProIleLeuPheGluSerVal 3180819 : AGATCATTTTATTCGCGATGACGAGAACACGATCGCCGATTTTATTCGAGAGCGTT : 3180872 341 : HisIleLeuThrValAsnLeuAspSerPheValLysLeuLeuLysAlaSerTyrSe : 359 |||:!::!!|||||||||:!!|||! !|||||| :!! !!:!.!! ||| HisValIleThrValAsnIleAspPhePheValValValSerArgThrLeuTyrLe 3180873 : CATGTGATCACGGTGAACATCGACTTCTTCGTGGTCGTCAGTAGAACActatattt : 3180929 360 : rAlaTyrSerIleLeu : 364 :::|||! ||| uHisPheSerArgLeu 3180930 : acacttttcAAGGCTG : 3180946 vulgar: CbirOr194 120 364 . KQ414646.1 3180047 3180946 + 385 M 95 285 G 0 3 M 17 51 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 35 105 G 0 3 M 32 96 5 0 2 I 0 83 3 0 2 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180048 3180946 385 + . gene_id 2 ; sequence CbirOr194 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3180048 3180388 . + . KQ414646.1 exonerate:protein2genome:local exon 3180048 3180388 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3180389 3180390 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3180389 3180462 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3180461 3180462 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3180463 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180463 3180667 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3180668 3180669 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3180668 3180754 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3180753 3180754 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3180755 3180946 . + . KQ414646.1 exonerate:protein2genome:local exon 3180755 3180946 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180048 3180946 385 + . alignment_id 2 ; Query CbirOr194 ; Align 3180048 121 285 ; Align 3180336 216 51 ; Align 3180464 234 105 ; Align 3180572 269 96 ; Align 3180755 301 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr194 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 358 Query range: 123 -> 350 Target range: 3160062 -> 3161151 124 : AlaLysValTyrThrValMetIleGluThrThrCysAlaCysMetAsnLeuThrTh : 142 :!!! !!.!||||||||| ! !! ! !!:!....!! !!:!: :!! !:! SerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValTrpMetLeuSe 3160063 : TCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTATGGATGTTGTC : 3160117 143 : rLeuPheIleAsnPheArgArgGlyAspLeuAlaTyrArgGluTrpLeuProTyrG : 161 ! !.!.! ||||||! ! !!!!:||| !! !|||! !|||||||||!:!! rAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrpLeuProPheA 3160118 : GGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGGTTACCTTTCG : 3160174 162 : luTyrSerSerGlyIle<->IleTyrTyrPheThrTyrPheArgGlnLeuValSer : 178 !:|||!!!:!! !:!: |||!:! !.!!|||||| ! !|||!!!|||!!! spTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGlnPheValThr 3160175 : ATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAGTTTGTAACT : 3160228 179 : LeuThrAlaAlaSerIleValAsnValAlaCysAspCysMetIleCysGlyLeuPh : 197 |||! ! ! !!!!! !!.!! !:!!!.! !||| !:!:.!! !!||||||!! LeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheSerGlyLeuLe 3160229 : CTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCAGCGGACTGTT : 3160285 198 : eLeuHisIleCysCysGlnIleAspIleLeuLysCysArgLeuArgLysCysLeuA : 216 .:!!||||||! !||||||.!!!!:||||||:!! !||||||!:!!.. ! !! uIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysSerIleLysP 3160286 : GATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGAGCATTAAAC : 3160342 217 : rgAsnArgAsn<->AspLeuSerGluCysValCysGlnHisGluSerIleTyr{Ly : 233 !:!!|||.!. ..! !!.!:!!|||!.!! !!!.||| ! !!||||||{|| roAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrArgIleTyr{Ly 3160343 : CTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATCGCATATAC{AA : 3160396 234 : } >>>> Target Intron 1 >>>> {s}PheAlaTyrMetIleAsnGluLy : 241 } 328 bp {|}|||||| ! !!:||||||! !|| }++ ++{s}PheAlaGluIleIleAsnAlaLy 3160397 : }gt.........................ag{A}TTCGCTGAAATTATAAACGCGAA : 3160748 242 : sPheArgValIleIleAlaValGlnPheAlaValSerThrLeuValLeuCysSerS : 260 ||||!!!:!!! !!:|||..!|||||| !|||!!!|||:!!..!:!!|||! !! sPheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThrMetCysPheA 3160749 : GTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACAATGTGCTTCA : 3160805 261 : erMetPheGlnLeuAlaArgMetSerMetAsnAlaGluValValProLeuLeuLeu : 278 :!:!:|||!:!|||.!!!:!! !.!:!! !!:!!:!!|||:!! !!|||:!!! ! snLeuPheArgLeuThrGlnThrLysValTyrSerGlnValLeuAlaLeuIlePro 3160806 : ACCTCTTTCGACTGACACAGACCAAGGTGTATTCGCAAGTTTTAGCATTGATACCG : 3160859 279 : TyrThrIleCysMetCysLeuGlnIleLeuIleTyrCysTrpTyrGlyAsnGluVa : 297 !:!! !:!! !!:!!! ! !||||||!!! !! !||||||||||||||||||.. PheMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnGluTh 3160860 : TTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACGAGAC : 3160916 298 : lLysLeuLys >>>> Target Intron 2 >>>> SerIleGlnLeuAlaAs : 306 !|||:!!||| 74 bp |||:!!:!!:!!..!|| rLysValLys++ ++SerLeuGluIleCysAs 3160917 : CAAAGTGAAGgt.........................agAGCCTTGAAATTTGCGA : 3161017 307 : pAspIlePheGluMetAspTrpIleAlaSerAspLysGlyThrLysGluAsnLeuI : 325 | :!!||||||! :!!|||! ||| !..!:!!.!!||||||:!!!..|||: pThrValPheGluSerAsnTrpThrAlaLeuSerGlnSerThrLysLysThrLeuL 3161018 : CACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAGCACCAAAAAGACACTCC : 3161074 326 : leMetIleMetAsnArgSerLeuValProIleAspIleSerThrAlaHisIleLeu : 343 !:! !|||||| ||||||||| !||||||!!:.!!!!! !||| !:!!!!! euThrIleMetLeuArgSerLeuLysProIleGluPheThrGlyAlaPheValPhe 3161075 : TGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTTC : 3161128 344 : ThrValAsnLeuAspSerPhe : 350 !!|||||||||!!:|||||| ProValAsnLeuGluSerPhe 3161129 : CCCGTAAATTTGGAGTCTTTT : 3161151 vulgar: CbirOr194 123 350 . KQ414646.1 3160062 3161151 + 358 M 43 129 G 0 3 M 53 159 G 0 3 M 13 39 S 0 2 5 0 2 I 0 324 3 0 2 S 1 1 M 67 201 5 0 2 I 0 70 3 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160063 3161151 358 + . gene_id 3 ; sequence CbirOr194 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3160063 3160397 . + . KQ414646.1 exonerate:protein2genome:local exon 3160063 3160397 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3160398 3160399 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3160398 3160725 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3160724 3160725 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3160726 3160927 . + . KQ414646.1 exonerate:protein2genome:local exon 3160726 3160927 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3160928 3160929 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3160928 3161001 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3161000 3161001 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3161002 3161151 . + . KQ414646.1 exonerate:protein2genome:local exon 3161002 3161151 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160063 3161151 358 + . alignment_id 3 ; Query CbirOr194 ; Align 3160063 124 129 ; Align 3160195 167 159 ; Align 3160357 220 39 ; Align 3160727 234 201 ; Align 3161002 301 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr194 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 343 Query range: 122 -> 366 Target range: 3153117 -> 3154092 123 : AsnAlaLysValTyrThrValMetIleGluThrThrCysAlaCysMetAsnLeuTh : 141 |||||||||!.!|||||| !.!.:!:!!:! ! ! !.! !:!: :!!|| AsnAlaLysAlaTyrThrTyrPheLeuAspIleLeuValValValLeuTrpIleTh 3153118 : AACGCTAAGGCTTACACATATTTCCTGGACATCTTGGTAGTCGTTTTATGGATAAC : 3153172 142 : rThrLeuPheIleAsnPheArgArgGlyAspLeuAlaTyrArgGluTrpLeuProT : 160 |:!!! !|||! :!!!:!|||||| ... :::||| |||||||||| rSerTyrPheThrAspTyrArgArgArgLysPheLysPheArgValTrpLeuProT 3153173 : ATCGTACTTCACGGACTACAGGcgcagaaaattcaaatttcgcgtCTGGTTACCTT : 3153229 161 : yrGluTyrSerSerGlyIleIleTyrTyrPheThrTyrPheArgGlnLeuValSer : 178 ||!!: !!!!!!! ! !:!!!:! !.!.! !|||! !!:!|||:!!|||!!! yrAspThrThrThrGlnProValPheThrLeuIleTyrCysGlnGlnIleValCys 3153230 : ACGACACTACTACACAACCTGTCTTCACTCTGATCTACTGTCAACAGATCGTCTGC : 3153283 179 : LeuThrAlaAlaSerIleValAsnValAlaCysAspCysMetIleCysGlyLeuPh : 197 ! ! !::! !! !:!!|||||| !|||||||||:!!.!! !!||||||.! ThrTrpTyrSerValAsnIleAsnValIleCysAspCysLeuPheSerGlyLeuMe 3153284 : ACGTGGTACAGCGTGAATATTAACGTCATTTGCGACTGCCTGTTCAGCGGCCTGAT : 3153340 198 : eLeuHisIleCysCysGlnIleAspIleLeuLysCysArgLeuArgLysCysLeuA : 216 .:!!!!.||||||! :!! ! :!!||| !! !! !|||!!.|||:!!! tIleGlnIleCysSerIleLeuArgLysMetLysProThrArgArgAsnCysValL 3153341 : GATACAGATTTGCTCAATCTTACGGAAGATGAAACCTACTCGGCGAAACTGTGTGC : 3153397 217 : rgAsnArg<-><->AsnAspLeuSerGluCysValCysGlnHisGluSerIleTyr : 232 ! !! ! !.. !! !|||:!!! ! ::: ::: ! euValThrIleIleArgTyrThrSerGlnSerArgGlnGluIleLysArgTyrVal 3153398 : TCGTCACCATAATCAGATATACAAGCCAGTCTCGacaagaaattaaacgatacgTT : 3153451 233 : LysPheAlaTyrMetIleAsnGluLysPheArgValIleIleAlaValGlnPheAl : 251 !!!.||| ! !!::!:|||||||||.!! !! !:!! ::!:!!|||||||| ***LeuAlaGlnIleValAsnGluLysLeuGlyAsnValSerSerIleGlnPheAl 3153452 : TGATTGGCGCAAATAGTGAACGAGAAGCTTGGAAATGTCTCGAGTATACAGTTCGC : 3153508 252 : aValSerThrLeuValLeuCysSerSerMetPheGlnLeuAlaArgMetSerMetA : 270 |:!!|||||| !!.!:!!|||! !!:!:!:!:!!:!:!!:!! !!!:..!:!:. aIleSerThrGlyAlaIleCysPheAsnLeuTyrArgMetSerValIleGluLeuG 3153509 : GATAAGCACAGGAGCGATATGCTTCAATCTCTATCGAATGTCGGTGATAGAACTCG : 3153565 271 : snAlaGluValValProLeuLeuLeuTyrThrIleCysMetCysLeuGlnIleLeu : 288 .! !!:!! !!||| ! !||| ! !|||:!!|||:!: ! !||||||!!! lyProLysPheValGluAlaLeuThrIleThrValCysLeuLeuAlaGlnIlePhe 3153566 : GTCCAAAGTTTGTGGAAGCGTTAACTATCACAGTATGCTTACTCGCGCAGATATTT : 3153619 289 : IleTyrCysTrpTyrGlyAsnGluValLysLeuLys >>>> Target Intron : 301 !||||||||||||||||||::: ... ! 53 bp TyrTyrCysTrpTyrGlyAsnAspArgAsnTyrAsp-- 3153620 : TACTATTGTTGGTAcggtaacgatagaaattacgATag.................. : 3153660 302 : 1 >>>> SerIleGlnLeuAlaAspAspIlePheGluMetAspTrpIleAlaSe : 316 |||:!!:!!:!!!.!||| :!! .!.! :!! ! !!.!|| ++SerLeuGluIleValAspArgValThrAsnSerAsnIleThrValSe 3153661 : .......agAGTCTCGAAATTGTGGACAGAGTAACGAACAGTAATATAACCGTGTC : 3153756 317 : rAspLysGlyThrLysGluAsnLeuIleMetIleMetAsnArgSerLeuValProI : 335 ||||:!!.!!:!!|||:!!! !|||:!!:!!!!:!!:...|||:!!|||! !|||: rAspGluSerSerLysLysIleLeuValLeuMetIleArgArgAlaLeuGluProV 3153757 : GGACGAAAGCTCCAAGAAGATTCTGGTATTGATGATACGACGAGCTTTGGAGCCTG : 3153813 336 : leAspIleSerThrAlaHisIleLeuThrValAsnLeuAspSerPheValLys > : 353 !!!!:.!!!!! ! !!.!|||:!!:!!|||||||||!!:||||||..!..! alGluPheThrGlyLeuArgIleMetSerValAsnLeuGluSerPheThrSer++ 3153814 : TCGAGTTCACCGGCCTTCGTATCATGTCTGTTAATCTCGAGTCATTCACGTCGgt. : 3153869 354 : >>> Target Intron 2 >>>> LeuLeuLysAlaSerTyrSerAlaTyrSer : 362 184 bp |||||||||:!!||||||:!!|||!:!!:! ++LeuLeuLysSerSerTyrAlaAlaPheAsn 3153870 : ........................agCTGTTGAAATCCTCCTACGCGGCTTTCAAT : 3154078 363 : IleLeuGlnGln : 366 !!:||||||::: MetLeuGlnGlu 3154079 : ATGCTCCaggaa : 3154092 vulgar: CbirOr194 122 366 . KQ414646.1 3153117 3154092 + 343 M 96 288 G 0 6 M 82 246 5 0 2 I 0 49 3 0 2 M 52 156 5 0 2 I 0 180 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153118 3154092 343 + . gene_id 4 ; sequence CbirOr194 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3153118 3153657 . + . KQ414646.1 exonerate:protein2genome:local exon 3153118 3153657 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3153658 3153659 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local intron 3153658 3153710 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3153709 3153710 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3153711 3153866 . + . KQ414646.1 exonerate:protein2genome:local exon 3153711 3153866 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3153867 3153868 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3153867 3154050 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3154049 3154050 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3154051 3154092 . + . KQ414646.1 exonerate:protein2genome:local exon 3154051 3154092 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153118 3154092 343 + . alignment_id 4 ; Query CbirOr194 ; Align 3153118 123 288 ; Align 3153412 219 246 ; Align 3153711 301 156 ; Align 3154051 353 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr194 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 258 Query range: 232 -> 353 Target range: 3150601 -> 3151028 233 : LysPheAlaTyrMetIleAsnGluLysPheArgValIleIleAlaValGlnPheAl : 251 !:!!:!!.!!:!! !!!:.!.|||||||||||| !||||||!.!||||||.!! ArgTyrValPheThrMetGlnGluLysPheArgTrpIleIleGlyValGlnLeuLe 3150602 : AGGTACGTTTTCACGATGCAAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTT : 3150656 252 : aValSerThrLeuValLeuCysSerSerMetPheGlnLeuAlaArgMet<->SerM : 269 ! !||||||||||||:!!|||! !! !:!!!:!:!!||||||!.!! ! !!! uSerSerThrLeuValValCysPheIleLeuTyrGluLeuAlaAsnThrProProI 3150657 : ATCGAGCACGCTGGTAGTGTGTTTCATCCTGTACGAATTGGCGAACACGCCTCCAA : 3150713 270 : etAsnAlaGluValValProLeuLeuLeuTyrThrIleCysMetCysLeuGlnIle : 287 !:!:!:!!:!! !:!!! !!!!:!!|||||| ! !|||||| !|||||| leSerSerLysTyrLeuGlnPheValLeuTyrLeuAlaCysMetMetThrGlnIle 3150714 : TCAGCTCCAAGTACCTGCAATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATC : 3150767 288 : LeuIleTyrCysTrpTyrGlyAsnGluValLysLeuLys >>>> Target Int : 301 !!!.!!|||||||||||||||.!.:!!:!!||||||||| 61 bp PhePheTyrCysTrpTyrGlyGluGlnLeuLysLeuLys++ 3150768 : TTCTTTTACTGCTGGTACGGCGAGCAGTTGAAACTGAAGgt............... : 3150811 302 : ron 1 >>>> SerIleGlnLeuAlaAspAspIlePheGluMetAspTrpIleAl : 315 |||:!!:!!:!!!.! ! ||||||||||||||||||||| ! ++SerValGluIleValArgThrIlePheGluMetAspTrpIlePr 3150812 : ..........agAGCGTCGAGATTGTGCGCACGATCTTCGAAATGGATTGGATACC : 3150912 316 : aSerAspLysGlyThrLysGluAsnLeuIleMetIleMetAsnArgSerLeuValP : 334 ! !.!.!!.|||! !|||:!!:!!||||||:!::!: !!..|||:!!:!!:!!| oLeuGlnAsnGlyIleLysLysAspLeuIleValValAlaArgArgAlaMetIleP 3150913 : TCTCCAGAACGGTATCAAGAAGGATTTGATAGTCGTGGCGAGAAGAGCGATGATCC : 3150969 335 : roIleAspIleSerThrAlaHisIleLeuThrValAsnLeuAspSerPheValLys : 352 |||||!!::!:!!! !|||:!!!!:!!!|||:!!:!!|||:!!!!!||||||!.. roIleGluLeuThrCysAlaTyrMetPheThrMetAspLeuAsnThrPheValSer 3150970 : CGATCGAGTTGACCTGCGCGTACATGTTCACCATGGACTTGAACACCTTCGTCAGC : 3151023 353 : Leu : 353 :!! Val 3151024 : GTC : 3151028 vulgar: CbirOr194 232 353 . KQ414646.1 3150601 3151028 + 258 M 35 105 G 0 3 M 33 99 5 0 2 I 0 57 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150602 3151028 258 + . gene_id 5 ; sequence CbirOr194 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3150602 3150808 . + . KQ414646.1 exonerate:protein2genome:local exon 3150602 3150808 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150809 3150810 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150809 3150869 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150868 3150869 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150870 3151028 . + . KQ414646.1 exonerate:protein2genome:local exon 3150870 3151028 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150602 3151028 258 + . alignment_id 5 ; Query CbirOr194 ; Align 3150602 233 105 ; Align 3150710 268 99 ; Align 3150870 301 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr194 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 258 Query range: 232 -> 351 Target range: 3158452 -> 3158889 233 : LysPheAlaTyrMetIleAsnGluLysPheArgValIleIleAlaValGlnPheAl : 251 !:!|||:!! ! ! !:!:||||||:!!|||!:!:!!|||:!: ! !||||||.. ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3158453 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3158507 252 : aValSerThrLeuValLeuCysSerSerMetPheGlnLeuAlaArgMetSerMetA : 270 !:!!|||! !! !|||:!!|||! !!:!:!:!:!!:!:!!.!!!:!!!:!.!|||: sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetA 3158508 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGG : 3158564 271 : snAlaGluValValProLeuLeuLeuTyrThrIleCysMetCysLeuGlnIleLeu : 288 !:...::: ||| ::::!!||||||:!!.!!|||! ! !||||||!!! spThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePhe 3158565 : AcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTT : 3158618 289 : IleTyrCysTrpTyrGlyAsnGluValLysLeuLys >>>> Target Intron : 301 !||||||||||||||||||||||||||| !||| 80 bp TyrTyrCysTrpTyrGlyAsnGluValLysAspLys++ 3158619 : TACTATTGTTGGTACGGCAACGAAGTGAAAGATAAGgt.................. : 3158659 302 : 1 >>>> SerIleGlnLeuAlaAspAspIlePheGluMetAspTrpIleAlaSe : 316 |||:!!|||||| !! !! ||||||.!.! ||||||! :!!! ++SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSerLe 3158660 : .......agAGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTT : 3158782 317 : rAspLysGlyThrLysGluAsnLeuIleMetIleMetAsnArgSerLeuValProI : 335 !:!!!!...!..!! ..! |||:!!!!:!!:|||!..|||:!!:!! !|||| uAsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgProI 3158783 : GAACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAA : 3158839 336 : leAspIleSerThrAlaHisIleLeuThrValAsnLeuAspSerPheVal : 351 ||!!:.!!!!!!:! !|||:!!:!!:!!|||||||||!!:||||||:!! leGluPheThrSerIleHisValValSerValAsnLeuGluSerPheMet 3158840 : TAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATG : 3158889 vulgar: CbirOr194 232 351 . KQ414646.1 3158452 3158889 + 258 M 68 204 5 0 2 I 0 76 3 0 2 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158453 3158889 258 + . gene_id 6 ; sequence CbirOr194 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3158453 3158656 . + . KQ414646.1 exonerate:protein2genome:local exon 3158453 3158656 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158657 3158658 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158657 3158736 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3158735 3158736 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158737 3158889 . + . KQ414646.1 exonerate:protein2genome:local exon 3158737 3158889 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3158453 3158889 258 + . alignment_id 6 ; Query CbirOr194 ; Align 3158453 233 204 ; Align 3158737 301 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr194 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 247 Query range: 232 -> 369 Target range: 3155805 -> 3156425 233 : LysPheAlaTyrMetIleAsnGluLysPheArgValIleIleAlaValGlnPheAl : 251 !:!|||.!! !||||||||||||:!!|||..!:!! ||| !..!|||||||| ArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAl 3155806 : AGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGC : 3155860 252 : aValSerThrLeuValLeuCysSerSerMetPheGlnLeuAlaArgMetSerMetA : 270 |||||||||||||!.!:!!|||! !!:!:!:!:!! !|||.!! !! ..!:!!! aValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValT 3155861 : GGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGA : 3155917 271 : sn<->AlaGluValValProLeuLeuLeuTyrThrIleCysMetCysLeuGlnIle : 287 .. !..! !||| !:!!:!!:!!|||!:!! !|||||| ! !|||||| hrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIle 3155918 : CGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATA : 3155971 288 : LeuIleTyrCysTrpTyrGlyAsnGluValLysLeuLysSerIleGln >>>> T : 304 !!!|||||||||||||||||||||||||||||||||||| ! ! ! PheIleTyrCysTrpTyrGlyAsnGluValLysLeuLysValSerTyr-+ 3155972 : TTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAGGTTTCTTATtt...... : 3156024 305 : arget Intron 1 >>>> LeuAlaAspAspIlePheGluMetAspTrpIleAl : 315 73 bp :!!:!!:!! ||||||.!.:!:||||||! ! ! ++IleSerAsnMetIlePheHisLeuAspTrpThrPr 3156025 : ...................agATTTCTAATATGATTTTTCACCTCGACTGGACACC : 3156128 316 : aSerAspLysGlyThrLysGluAsnLeuIleMetIleMetAsnArgSerLeuValP : 334 !! !||||||!.!||||||..!|||:!!:!!! !!:|||! |||:!!! ! !| oPheAspLysAlaThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerP 3156129 : GTTCGATAAAGCTACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGC : 3156185 335 : roIleAspIleSerThrAlaHisIleLeuThrValAsnLeuAspSerPheValLys : 352 |||||!!:|||! !!:!!.!!.!:!:|||:!!||||||||||||||||||||| roIleGluIleIleSerValArgValLeuSerValAsnLeuAspSerPheValAla 3156186 : CAATTGAAATCATCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCT : 3156239 353 : LeuLeuLys{A} >>>> Target Intron 2 >>>> {la}SerTyrSerAl : 360 :!! !! {|} 133 bp {||}||||||||||| ValSerIle{A}-+ +-{la}SerTyrSerAl 3156240 : GTCAGTATt{g}at.........................aa{CT}TCTTACTCGGC : 3156396 361 : aTyrSerIleLeuGlnGlnMetGluGly : 369 ||||!:!:!!||||||!:: |||||| aTyrAsnValLeuGlnArgGlyGluGly 3156397 : GTACAACGTTCTCCAACGCGGCGAAGGC : 3156425 vulgar: CbirOr194 232 369 . KQ414646.1 3155805 3156425 + 247 M 38 114 G 0 3 M 33 99 5 0 2 I 0 69 3 0 2 M 52 156 S 0 1 5 0 2 I 0 129 3 0 2 S 1 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155806 3156425 247 + . gene_id 7 ; sequence CbirOr194 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3155806 3156021 . + . KQ414646.1 exonerate:protein2genome:local exon 3155806 3156021 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156022 3156023 . + . intron_id 1 ; splice_site "TT" KQ414646.1 exonerate:protein2genome:local intron 3156022 3156094 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3156093 3156094 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156095 3156251 . + . KQ414646.1 exonerate:protein2genome:local exon 3156095 3156251 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156252 3156253 . + . intron_id 2 ; splice_site "at" KQ414646.1 exonerate:protein2genome:local intron 3156252 3156384 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3156383 3156384 . + . intron_id 1 ; splice_site "AA" KQ414646.1 exonerate:protein2genome:local cds 3156385 3156425 . + . KQ414646.1 exonerate:protein2genome:local exon 3156385 3156425 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155806 3156425 247 + . alignment_id 7 ; Query CbirOr194 ; Align 3155806 233 114 ; Align 3155923 271 99 ; Align 3156095 304 156 ; Align 3156387 357 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr194 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 227 Query range: 0 -> 131 Target range: 3154921 -> 3155314 1 : MetArgValMetGlnPheProLeuLysValLeuThrValAlaGlyCysTrpProPr : 19 |||!.!:!!:!!||| ! !|||:!! !!! !.!!:!!..!||| !|||||||| MetHisLeuLeuGlnLysGlnLeuGlnPheCysAlaMetCysGlyLeuTrpProPr 3154922 : ATGCATCTACTGCAAAAACAACTGCAATTTTGCGCAATGTGCGGTCTCTGGCCACC : 3154976 20 : oIleSerTrpSerProLeuCysLysArgThrValTyrAsnAlaTyrThrIlePheV : 38 | !|||! :!!||||||! !|||||| !!.!|||::!!.!!:!:!! !:!. oProSerSerAlaProLeuPheLysArgPheAlaTyrSerValPheSerTrpTyrT 3154977 : GCCATCATCAGCTCCGCTGTTTAAAAGATTCGCCTACTCTGTATTCTCGTGGTACA : 3155033 39 : alThrLeuLeuLeuPheThrPheMetValProGlnLeuLeuAspIleIleLeuAsn : 56 .! !:!!|||:!!!:!! ! :!: !! !|||:!!:!!|||:!!|||:!!||| hrLeuIleLeuValTyrIleThrValPheSerGlnIleMetAspLeuIleValAsn 3155034 : CGTTAATACTGGTGTACATCACGGTTTTCAGCCAAATCATGGACCTAATCGTGAAC : 3155087 57 : ValAspAsnProGluAspPheThrAlaThrPheTyrValMetLeuAlaMetValIl : 75 ||| !.!! !!!:!!:|||!:!! !!.!||||||:!!:!:|||||| !.!|| ValThrThrGlnAspGluPheSerAspAsnPheTyrIleLeuLeuAlaCysAlaIl 3155088 : GTGACGACTCAAGACGAGTTTAGCGACAATTTTTACATACTTCTGGCGTGTGCGAT : 3155144 76 : eAlaCysCysLysMetLeuSerLeuLeuHisAsnArgLysAsnIleAlaLysLeuT : 94 |:!!! ||| ! !|||:!!|||:!!!:!|||||||||:!! !::::!!! eSerLeuGlnLysAlaGlnSerValLeuAsnSerArgLysAsnValHisArgMetI 3155145 : ATCCTTGCAGAAAGCACAGAGTGTGTTAAACAGTCGTAAGAATGTCCACCGTATGA : 3155201 95 : hrAspThrLeuAlaGluGluProPheArgProLeuGluProAspGluIleGluIle : 112 !||| !||| !...|||||||||!.!||| ! !!!:|||||||||||| leAspLeuLeuAsnSerGluProPheHisProGluCysLysGluGluIleGluIle 3155202 : TCGATCTTTTGAACAGCGAACCTTTTCATCCAGAATGTAAGGAGGAAATCGAGATA : 3155255 113 : ArgGlnGlnPheAspAsnMetIleGlnThrAsnAlaLysValTyrThrValMetIl : 131 |||...::!.!!..!.!. !::! |||||| !:!:|| ArgSerArgIleSerGluHisAlaArg***ValLeuHisPheTyrThrGlyLeuIl 3155256 : AGAAGTAGGATCTCCGAGCACGCCAGGTaagttcttcatttttatacagGCTTAAT : 3155312 132 : e : 131 | e 3155313 : C : 3155314 vulgar: CbirOr194 0 131 . KQ414646.1 3154921 3155314 + 227 M 131 393 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3154922 3155314 227 + . gene_id 8 ; sequence CbirOr194 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3154922 3155314 . + . KQ414646.1 exonerate:protein2genome:local exon 3154922 3155314 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3154922 3155314 227 + . alignment_id 8 ; Query CbirOr194 ; Align 3154922 1 393 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr194 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 222 Query range: 231 -> 350 Target range: 3174931 -> 3175362 232 : TyrLysPheAlaTyrMetIleAsnGluLysPheArgValIleIleAlaValGlnPh : 250 !:!!:!|||||| ! !!:||||||! !||||||!!!:!!! !!:|||..!||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3174932 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3174986 251 : eAlaValSerThrLeuValLeuCysSerSerMetPheGlnLeuAlaArgMetSerM : 269 | !|||!!!|||:!!..!:!!|||! !!:!:!:|||!:!|||.!!!:!! !.!: eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3174987 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3175043 270 : etAsnAlaGluValValProLeuLeuLeuTyrThrIleCysMetCysLeuGlnIle : 287 !! !!:!!:!!|||:!! !!|||:!!! !!:!! !:!! !!:!!! ! !|||||| alTyrSerGlnValLeuAlaLeuIleProPheMetValSerValPheAlaGlnIle 3175044 : TGTATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATA : 3175097 288 : LeuIleTyrCysTrpTyrGlyAsnGluValLysLeuLys{Se} >>>> Target : 301 !!! !! !||||||||||||||||||..!|||:!!|||{ } 7 PheTyrCysCysTrpTyrGlyAsnGluThrLysValLys{Va}-- 3175098 : TTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG{GT}ac........... : 3175143 302 : Intron 1 >>>> {r}IleGlnLeuAlaAspAspIlePheGluMetAspTrpI : 314 4 bp {!}:!!:!!:!!..!||| :!!||||||! :!!|||! ++{l}LeuGluIleCysAspThrValPheGluSerAsnTrpT 3175144 : ..............ag{C}CTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGA : 3175252 315 : leAlaSerAspLysGlyThrLysGluAsnLeuIleMetIleMetAsnArgSerLeu : 332 ||| !..!:!!.!!||||||:!!!..|||:!:! !|||||| ||||||||| hrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgSerLeu 3175253 : CGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTG : 3175306 333 : ValProIleAspIleSerThrAlaHisIleLeuThrValAsnLeuAspSerPhe : 350 !||||||!!:.!!!!! !||| !:!!!!! !!|||||||||!!:|||||| LysProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSerPhe 3175307 : AAGCCAATAGAATTCACCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTT : 3175362 vulgar: CbirOr194 231 350 . KQ414646.1 3174931 3175362 + 222 M 69 207 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174932 3175362 222 + . gene_id 9 ; sequence CbirOr194 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3174932 3175140 . + . KQ414646.1 exonerate:protein2genome:local exon 3174932 3175140 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3175141 3175142 . + . intron_id 1 ; splice_site "AC" KQ414646.1 exonerate:protein2genome:local intron 3175141 3175214 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3175213 3175214 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3175215 3175362 . + . KQ414646.1 exonerate:protein2genome:local exon 3175215 3175362 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3174932 3175362 222 + . alignment_id 9 ; Query CbirOr194 ; Align 3174932 232 207 ; Align 3175216 302 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr194 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 219 Query range: 0 -> 121 Target range: 3159620 -> 3159983 1 : MetArgValMetGlnPheProLeuLysValLeuThrValAlaGlyCysTrpProPr : 19 |||!.!..!:!!|||!!. !!||||||..!||||||:!!..!|||! ! !|| MetHisThrLeuGlnLeuSerLeuLysThrLeuThrIleCysGlyTyrIleArgPr 3159621 : ATGCACACGTTGCAATTGTCGTTGAAAACTTTGACGATTTGCGGCTACATAAGGCC : 3159675 20 : oIleSerTrpSerProLeuCysLysArgThrValTyrAsnAlaTyrThrIlePheV : 38 |! !||||||!.! !!! ! ! !!:! !:!!||||||!.!:!!|||:!! !| oThrSerTrpLysSerProGlyLeuLysLeuLeuTyrAsnValHisThrValThrV 3159676 : AACATCGTGGAAGTCACCGGGGCTAAAGCTTCTCTATAACGTACACACGGTTACTG : 3159732 39 : alThrLeuLeuLeuPheThrPheMetValProGlnLeuLeuAspIleIleLeuAsn : 56 ||..!:!!:!!||| !||||||.!.||| !!|||:!!||||||||||||...||| alValValValLeuSerThrPhePheValAlaGlnIleLeuAspIleIlePheAsn 3159733 : TAGTGGTAGTTCTTAGCACGTTTTTCGTCGCCCAGATATTggacattattttcaac : 3159786 57 : ValAspAsnProGluAspPheThrAlaThrPheTyrValMetLeuAlaMetValIl : 75 |||!!:|||! !!!:!!:|||!:!! !!.!|||! !:!!! !! !..!:!!:!!! ValGluAsnGlnAspGluPheSerAspAsnPheCysIleThrCysCysValMetAs 3159787 : gtgGAGAATCAAGACGAGTTTAGCGACAATTTCTGCATAACGTGCTGCGTGATGAA : 3159843 76 : eAlaCysCysLysMetLeuSerLeuLeuHisAsnArgLysAsnIleAlaLysLeuT : 94 !::! ! ! |||:!!! !||||||||| ...|||:!!! ||| !!!.|||! nSerLeuGlyLysLeuTyrSerLeuLeuIleGlyArgGluMetIleGlnAsnLeuI 3159844 : CAGCCTTGGAAAGTTGTACAGCTTGCTGATAGGACGAGAAATGATCCAAAATTTAA : 3159900 95 : hrAspThrLeuAlaGluGluProPheArgProLeuGluProAspGluIleGluIle : 112 !|||:!!||| !...!!:|||.!!|||||||||!!: !! |||! !|||||| leAspSerLeuGlnSerAspProLeuArgProLeuAspGluValGluAsnGluIle 3159901 : TAGACTCGCTACAAAGTGACCCTCTTAGGCCGTTGGACGAAGTGGAGAATGAAATT : 3159954 113 : ArgGlnGlnPheAspAsnMetIleGln : 121 ||| !::! !!!:!!.! |||:!! ArgLeuArgHisGluLysThrIleGlu 3159955 : CGATTGAGACACGAGAAGACAATCGAG : 3159983 vulgar: CbirOr194 0 121 . KQ414646.1 3159620 3159983 + 219 M 121 363 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3159621 3159983 219 + . gene_id 10 ; sequence CbirOr194 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3159621 3159983 . + . KQ414646.1 exonerate:protein2genome:local exon 3159621 3159983 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3159621 3159983 219 + . alignment_id 10 ; Query CbirOr194 ; Align 3159621 1 363 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr194 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 214 Query range: 230 -> 357 Target range: 3178378 -> 3178917 231 : IleTyrLysPheAlaTyrMetIleAsnGluLysPheArgValIleIleAlaValGl : 249 ||| :::|||.!! ! ! !:!:||| !|||!:! !!!:||| !:!!|| IleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLeuGl 3178379 : atttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCTGCA : 3178433 250 : nPheAlaValSerThrLeuValLeuCysSerSerMetPheGlnLeuAlaArgMetS : 268 ||||:!!:!!|||:!! !|||||||||! !|||!!:!:!:!!:!!:!!! !!!:! nPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrIleA 3178434 : ATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGATTA : 3178490 269 : er<->MetAsnAlaGluValValProLeuLeuLeuTyrThrIleCysMetCysLeu : 285 :! .!.!:! !.!. !!||| !! ! !! !||| ! !|||||| ! ! snProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeuThr 3178491 : ATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACG : 3178544 286 : GlnIleLeuIleTyrCysTrpTyrGlyAsnGluValLysLeuLys >>>> Targ : 301 |||:!:! !:!!|||||||||!:!||||||||||||! !|||||| GlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys++ 3178545 : CAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAGgt......... : 3178594 302 : et Intron 1 >>>> SerIleGlnLeuAlaAspAspIlePheGluMetAspTr : 313 155 bp ||| !:!!:!!!.!!!:! !|||!:!||||||||||| ++SerGluLysValGlyGluAlaIleTyrGluMetAspTr 3178595 : ................agAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTG : 3178783 314 : pIleAlaSerAspLysGlyThrLysGluAsnLeuIleMetIleMetAsnArgSerL : 332 |! ||| ! !! ! !! !!:!:!!:!!|||:!::!!|||||| |||||| pThrAlaLeuProThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerL 3178784 : GACGGCACTTCCCACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAA : 3178840 333 : euValProIleAspIleSerThrAlaHisIleLeuThrValAsnLeuAspSerPhe : 350 ! !|||:!! ! !!:!!!!:!!.!|||:!!:!!..!:!!::! !!!:|||||| ysArgProValLysMetThrSerGlyHisValValValLeuSerAlaGluSerPhe 3178841 : AACGACCTGTTAAAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTT : 3178894 351 : ValLysLeuLeuLysAlaSer : 357 :!!...:!! !!:! !||| MetSerValSerArgIleSer 3178895 : ATGTCTGTTAGTAGAATTTCC : 3178917 vulgar: CbirOr194 230 357 . KQ414646.1 3178378 3178917 + 214 M 38 114 G 0 3 M 32 96 5 0 2 I 0 151 3 0 2 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178379 3178917 214 + . gene_id 11 ; sequence CbirOr194 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3178379 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178379 3178591 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178592 3178593 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3178592 3178746 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3178745 3178746 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3178747 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178747 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178379 3178917 214 + . alignment_id 11 ; Query CbirOr194 ; Align 3178379 231 114 ; Align 3178496 269 96 ; Align 3178747 301 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr194 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 136 -> 236 Target range: 3174311 -> 3174618 137 : CysMetAsnLeuThrThrLeuPheIleAsnPheArgArgGlyAspLeuAlaTyrAr : 155 |||::: !!!:!!:!!:!!|||! !|||!:!! ! !!!!:||| !! !|| CysIleTrpPheSerSerIlePheThrAlaPheLysIleArgGluLeuProLeuAr 3174312 : tgtatatggTTCTCGTCGATCTTCACGGCTTTTAAGATCAGAGAGTTACCCCTTCG : 3174366 156 : gGluTrpLeuProTyrGluTyrSerSerGlyIleIleTyrTyr----PheThrTyr : 172 |! !|||||| !!!:!..!! ! !||| !||| |||!:!####.!!|||||| gGlyTrpLeuThrPheArgLeu***SerHisIleGlyTyrPhe####LeuThrTyr 3174367 : AGGATGGTTAACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTAC : 3174421 173 : PheArgGlnLeuValSerLeuThrAlaAlaSerIleValAsnValAlaCysAspCy : 191 ! !|||!!!|||!!!|||! ! ! !!!! !!.!! !:!!!.!! !||| AlaTyrGlnPheValThrLeuIlePheLeuThrSerAlaIleIleGlySerAspAs 3174422 : GCTTATCAGTTTGTAACTCTGATATTCCTTACTTCTGCTATTATCGGTTCTGACAA : 3174478 192 : sMetIleCysGlyLeuPheLeuHisIleCysCysGlnIleAspIleLeuLysCysA : 210 !:!:.!! !!||||||!!.:!!||||||! !||||||.!!!!:||||||:!! !| nLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisA 3174479 : TCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATC : 3174535 211 : rgLeuArgLysCysLeuArgAsnArgAsn<->AspLeuSerGluCysValCysGln : 227 |||||!:!!.. ! !! !:!!|||.!. ..! !!.!:!!|||!.!! !!!. rgLeuLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHis 3174536 : GTCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCAT : 3174589 228 : HisGluSerIleTyrLysPheAlaTyr : 236 ||| ! !!||||||||||||...||| HisTyrArgIleTyrLysPheValTyr 3174590 : CATTATCGCATATACAAGTTTgtctac : 3174618 vulgar: CbirOr194 136 236 . KQ414646.1 3174311 3174618 + 119 M 33 99 F 0 4 M 50 150 G 0 3 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174312 3174618 119 + . gene_id 12 ; sequence CbirOr194 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174312 3174618 . + . KQ414646.1 exonerate:protein2genome:local exon 3174312 3174618 . + . insertions 3 ; deletions 0 ; frameshifts 4 KQ414646.1 exonerate:protein2genome:local similarity 3174312 3174618 119 + . alignment_id 12 ; Query CbirOr194 ; Align 3174312 137 99 ; Align 3174415 170 150 ; Align 3174568 220 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr195PIC Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 511 Query range: 2 -> 275 Target range: 3157330 -> 3158650 3 : LeuLysLeuThrTyrThrIleValMetIleAlaGlyCysPheArgProLeuSerTr : 21 ||||||! !|||! !:!::!!! |||:!!||||||!:!! !|||! !||||| LeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuProHisSerTr 3157331 : CTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTATCTGCCCCATTCGTG : 3157385 22 : pThrSerProPheLysCysThrIleTyrIleIleTyrArgLeuTyrIleIleSerM : 40 ||||!!!||||||:!! ! :!!:!:|||! !|||||| !!:::::: ... : pThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheSerPheLeuL 3157386 : GACAACACCGTTCGAAAGGTCTTTGTACAATATCTACGGGGtgttctcctttcttc : 3157442 41 : etLeuCysThrPheThrMetLeuGlnIleMetAspIleLeuLeuAspIleAspAsn : 58 ::||| !!:!.!!..!:!:! !||||||:!:|||:!! !:!!:!!:!:!!:!:! euLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIleAsnValGluSer 3157443 : ttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCAACGTGGAGAGC : 3157496 59 : AlaAspAspPheThrAsnAsnLeuAsnMetLeuLeuThrThrSerAlaAlaSerTy : 77 !|||||||||!:::::|||...:::::: ! !..!..!! ! !.!!!!!!: GlnAspAspPheSerAspAsnPheSerValThrAlaValValPheLeuThrTrpPh 3157497 : CAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTTCTCACGTGGTT : 3157553 78 : rLysMetPheIleMetTrpIleAsnTyrGluAsnPheAlaThrLeuIleAsnTyrL : 96 !|||:!:! !|||:!: |||... !! !|||||| ! !||||||:!! | eLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuIleAspThrL 3157554 : CAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGATCGATACGC : 3157610 97 : euThr{Un} >>>> Target Intron 1 >>>> {k}AsnAsnThrLeuArg : 103 || !{ } 173 bp { } ||||||:!! !! euGln{Ly}-- ++{s}TrpAsnThrIleGly 3157611 : TTCAG{AA}ca.........................ag{A}TGGAACACGATTGGC : 3157804 104 : TyrThrIleLeuIleGluThrThrCysSerPheIleAlaLeuThrSerLeuPheTh : 122 ||| !! |||::: ::: ! !|||||| !:!!! !||||||!!.! TyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrValArgSerLeuLeuIl 3157805 : TACTGGAGtttactattaatttctacGTTCTTTATATACGTGAGATCGCTTTTGAT : 3157861 123 : rAspPheThrHisArgArgLeuThrTyrArgGluTrpValProTyrAspTyrSerS : 141 !||||||!:!:!!|||!:!|||! !!:!|||! !|||:!!||||||||||||||| eAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrAspTyrSerP 3157862 : AGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACGATTACTCCC : 3157918 142 : erPheMetAlaPheCysPheThrTyrAlaGlnGlnMetValSerThrPheHisCys : 159 !! !||| !.!!|||! !!.!!!.||| :!!:!!:!! ||| roAlaProIlePheIleLeuThrSerValHisGlnAlaIleAlaSerThrIleCys 3157919 : CTGCGCCCATTTTTATCCTTACCTCCGTCCATCAAGCTATAGCCTCGACGATATGT : 3157972 160 : AlaThrValAsnValAlaCysAspThrLeuLeuCysGlyPheLeuMetHisLeuCy : 178 ..!||| !!.!|||.!! |||||||||! ! !|||!!.|||!!::!!:!!! CysThrSerThrValThrValAspThrLeuTyrThrGlyLeuLeuIleAsnIleTy 3157973 : TGCACTTCGACCGTCACTGTGGATACTCTATACACTGGCTTGTTGATTAATATCTA : 3158029 179 : sCysGlnIleGluValLeuGluTyrArgLeuLysLysLeuSerSerAsnLys<->A : 196 !||||||.!!|||:!!||||||:!!||||||!:!!!.:!!!.!!!!.!.:!! : rCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysThrGluGlnAspA 3158030 : CTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAACTGAGCAGGATG : 3158086 197 : snSerValGlyTyrCysIleArgHisHisAsnArgIlePhe{Gl} >>>> Targ : 210 !!|||||| ! ! ||| !!:!||||||:!!||||||!:!{:!} spSerValLysGlnCysAlaGlnHisHisAspArgIleTyr{Gl}++ 3158087 : ACTCTGTGAAGCAATGTGCTCAACATCACGATCGTATATAC{CA}gt......... : 3158132 211 : et Intron 2 >>>> {u}PheAlaArgLeuValAsnIleArgPheAlaLysIl : 222 325 bp {!}|||:!!!:! !|||||| !..!||| ! !|| ++{n}PheSerLysLysValAsnGluGluPheLysLeuIl 3158133 : ................ag{A}TTTTCGAAAAAGGTGAACGAAGAATTCAAACTGAT : 3158489 223 : eIleGlyTyrGlnPheIleAlaSerMetLeuValIleCysAlaAsnLeuTyrGlnL : 241 |:!: !! !|||||| ! !||||||! !||||||||| !|||||||||!:!: eLeuIleSerGlnPheCysIleSerMetSerValIleCysPheAsnLeuTyrArgM 3158490 : ACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAA : 3158546 242 : euThrLysSerSerLeuSerAlaAsnHisValGlnLeuIleMetTyrThrSerCys : 259 !!|||:!!! !!.!:!!......... |||::::::|||:!:|||:!!! !||| etThrGlnIleLysMetAspThrLysPheValGluIleIleLeuTyrSerPheCys 3158547 : TGACACAGATCAAAATGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGC : 3158600 260 : MetLeuThrGlnIlePheIleTyrCysTrpPheGlyAsnLysValLys : 275 ! :!!|||||||||||| !|||||||||!:!||||||:!!|||||| ThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGluValLys 3158601 : ACTATCACGCAGATATTTTACTATTGTTGGTACGGCAACGAAGTGAAA : 3158650 vulgar: CbirOr195PIC 2 275 . KQ414646.1 3157330 3158650 + 511 M 95 285 S 0 2 5 0 2 I 0 169 3 0 2 S 1 1 M 97 291 G 0 3 M 14 42 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157331 3158650 511 + . gene_id 1 ; sequence CbirOr195PIC ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3157331 3157617 . + . KQ414646.1 exonerate:protein2genome:local exon 3157331 3157617 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3157618 3157619 . + . intron_id 1 ; splice_site "CA" KQ414646.1 exonerate:protein2genome:local intron 3157618 3157790 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3157789 3157790 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3157791 3158129 . + . KQ414646.1 exonerate:protein2genome:local exon 3157791 3158129 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158130 3158131 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158130 3158454 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3158453 3158454 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3158455 3158650 . + . KQ414646.1 exonerate:protein2genome:local exon 3158455 3158650 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157331 3158650 511 + . alignment_id 1 ; Query CbirOr195PIC ; Align 3157331 3 285 ; Align 3157792 99 291 ; Align 3158086 196 42 ; Align 3158456 211 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr195PIC Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 511 Query range: 2 -> 275 Target range: 3163858 -> 3165178 3 : LeuLysLeuThrTyrThrIleValMetIleAlaGlyCysPheArgProLeuSerTr : 21 ||||||! !|||! !:!::!!! |||:!!||||||!:!! !|||! !||||| LeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuProHisSerTr 3163859 : CTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTACCTGCCCCATTCGTG : 3163913 22 : pThrSerProPheLysCysThrIleTyrIleIleTyrArgLeuTyrIleIleSerM : 40 ||||!!!||||||:!! ! :!!:!:|||! !|||||| !!:!!!:! !:!: !: pThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheTyrLeuLeuL 3163914 : GACAACGCCGTTCGAAAGGTCTTTGTACAATATCTACGGGGTGTTCTACTTGCTTC : 3163970 41 : etLeuCysThrPheThrMetLeuGlnIleMetAspIleLeuLeuAspIleAspAsn : 58 !:||| !!!:!.!!.!!:!:! !||||||:!:|||:!! !:!!:!!:!:!!:!:! euLeuSerSerLeuAlaLeuSerGlnIleLeuAspValAlaIleAsnValGluSer 3163971 : TTCTAAGCAGCCTCGCCCTCTCGCAAATATTAGACGTAGCGATCAACGTGGAGAGC : 3164024 59 : AlaAspAspPheThrAsnAsnLeuAsnMetLeuLeuThrThrSerAlaAlaSerTy : 77 !|||||||||::::::|||...:::::: !..!..!! ! !.!!!!!!: GlnAspAspPheSerAspAsnPheSerIleThrAlaValValPheLeuThrTrpPh 3164025 : CAGGATGACTTCagtgacaatttttctatcaccGCTGTGGTGTTTCTCACGTGGTT : 3164081 78 : rLysMetPheIleMetTrpIleAsnTyrGluAsnPheAlaThrLeuIleAsnTyrL : 96 !|||:!:! !|||:!: |||... !! !|||||| ! !||||||:!! | eLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuIleAspThrL 3164082 : CAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGATCGATACGC : 3164138 97 : euThr{Un} >>>> Target Intron 1 >>>> {k}AsnAsnThrLeuArg : 103 || !{ } 173 bp { } ||||||:!! !! euGln{Ly}-- ++{s}TrpAsnThrIleGly 3164139 : TTCAG{AA}ca.........................ag{A}TGGAACACGATTGGC : 3164332 104 : TyrThrIleLeuIleGluThrThrCysSerPheIleAlaLeuThrSerLeuPheTh : 122 ||| !! !|||:!! !! ! !...! !!::||| !:!!! !||||||!!.|| TyrTrpSerLeuLeuLeuIleCysAlaPheTrpIleTyrValArgSerLeuLeuTh 3164333 : TACTGGAGTTTACTATTAATTTGTGCGTTCTGGATATACGTGAGATCGCTTTTGAC : 3164389 123 : rAspPheThrHisArgArgLeuThrTyrArgGluTrpValProTyrAspTyrSerS : 141 |||||||!:! !|||!:!|||! !!:!|||! !|||:!!||||||||||||||| rAspPheSerSerArgLysLeuMetPheArgAlaTrpLeuProTyrAspTyrSerP 3164390 : AGATTTTAGTAGTAGAAAACTGATGTTTCGAGCATGGTTACCCTACGATTACTCCC : 3164446 142 : erPheMetAlaPheCysPheThrTyrAlaGlnGlnMetValSerThrPheHisCys : 159 !! !||| !.!!|||!:!!.!!!.||| :!!:!!.!! ||| roAlaProIlePheIleLeuThrPheValHisGlnAlaIleAlaAlaThrIleCys 3164447 : CTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCGACGATATGT : 3164500 160 : AlaThrValAsnValAlaCysAspThrLeuLeuCysGlyPheLeuMetHisLeuCy : 178 ..!||| !!:!|||.!! |||:!!|||! ! !|||!!.|||!!::!!:!!! CysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLeuIleAsnIleTy 3164501 : TGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTGATTAATATCTA : 3164557 179 : sCysGlnIleGluValLeuGluTyrArgLeuLysLysLeuSerSerAsnLys<->A : 196 !||||||.!!|||:!!||||||:!!||||||!:!!!.:!!!.!!!!.!.:!! : rCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysThrGluGlnAspA 3164558 : CTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAACTGAGCAGGATG : 3164614 197 : snSerValGlyTyrCysIleArgHisHisAsnArgIlePhe{Gl} >>>> Targ : 210 !!|||||| ! ! ||| !!:!||||||:!!||||||!:!{:!} spSerValLysGlnCysAlaGlnHisHisAspArgIleTyr{Gl}++ 3164615 : ACTCTGTGAAGCAATGTGCTCAACATCACGATCGTATATAC{CA}gt......... : 3164660 211 : et Intron 2 >>>> {u}PheAlaArgLeuValAsnIleArgPheAlaLysIl : 222 325 bp {!}|||:!!!:! !|||||| !..!||| ! !|| ++{n}PheSerLysLysValAsnGluGluPheLysLeuIl 3164661 : ................ag{A}TTTTCGAAAAAGGTGAACGAAGAATTCAAACTGAT : 3165017 223 : eIleGlyTyrGlnPheIleAlaSerMetLeuValIleCysAlaAsnLeuTyrGlnL : 241 |:!: !! !|||||| ! !||||||! !||||||||| !|||||||||!:!: eLeuIleSerGlnPheCysIleSerMetSerValIleCysPheAsnLeuTyrArgM 3165018 : ACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAA : 3165074 242 : euThrLysSerSerLeuSerAlaAsnHisValGlnLeuIleMetTyrThrSerCys : 259 !!|||:!!! !!.!:!!......... |||::::::|||:!:|||:!!! !||| etThrGlnIleLysMetAspThrLysPheValGluIleIleLeuTyrSerPheCys 3165075 : TGACACAGATCAAAATGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGC : 3165128 260 : MetLeuThrGlnIlePheIleTyrCysTrpPheGlyAsnLysValLys : 275 ! :!!|||||||||||| !|||||||||!:!||||||:!!|||||| ThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGluValLys 3165129 : ACTATCACGCAGATATTTTACTATTGCTGGTACGGCAACGAAGTGAAA : 3165178 vulgar: CbirOr195PIC 2 275 . KQ414646.1 3163858 3165178 + 511 M 95 285 S 0 2 5 0 2 I 0 169 3 0 2 S 1 1 M 97 291 G 0 3 M 14 42 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3163859 3165178 511 + . gene_id 2 ; sequence CbirOr195PIC ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3163859 3164145 . + . KQ414646.1 exonerate:protein2genome:local exon 3163859 3164145 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164146 3164147 . + . intron_id 1 ; splice_site "CA" KQ414646.1 exonerate:protein2genome:local intron 3164146 3164318 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3164317 3164318 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164319 3164657 . + . KQ414646.1 exonerate:protein2genome:local exon 3164319 3164657 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164658 3164659 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164658 3164982 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3164981 3164982 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164983 3165178 . + . KQ414646.1 exonerate:protein2genome:local exon 3164983 3165178 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3163859 3165178 511 + . alignment_id 2 ; Query CbirOr195PIC ; Align 3163859 3 285 ; Align 3164320 99 291 ; Align 3164614 196 42 ; Align 3164984 211 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr195PIC Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 383 Query range: 11 -> 276 Target range: 3154957 -> 3156009 12 : IleAlaGlyCysPheArgProLeuSerTrpThrSerProPheLysCysThrIleTy : 30 !!:..!||| !!::! !|||! !|||! .!! !!! !|||||| ! ! !|| MetCysGlyLeuTrpProProProSerSerAlaProLeuPheLysArgPheAlaTy 3154958 : ATGTGCGGTCTCTGGCCACCGCCATCATCAGCTCCGCTGTTTAAAAGATTCGCCTA : 3155012 31 : rIleIleTyrArgLeuTyrIleIleSerMetLeuCysThrPheThrMetLeuGlnI : 49 | !:!!!:! !! !|||! :!!! !:!!:!!! !! ! ..!.!. !|||| rSerValPheSerTrpTyrThrLeuIleLeuValTyrIleThrValPheSerGlnI 3155013 : CTCTGTATTCTCGTGGTACACGTTAATACTGGTGTACATCACGGTTTTCAGCCAAA : 3155069 50 : leMetAspIleLeuLeuAspIleAspAsnAlaAspAspPheThrAsnAsnLeuAsn : 67 ||||||||:!!:!!:!!:!!:!: !.! !|||!!:|||!:!:!!|||!!! !! leMetAspLeuIleValAsnValThrThrGlnAspGluPheSerAspAsnPheTyr 3155070 : TCATGGACCTAATCGTGAACGTGACGACTCAAGACGAGTTTAGCGACAATTTTTAC : 3155123 68 : MetLeuLeuThrThrSerAlaAlaSerTyrLysMetPheIleMetTrpIleAsnTy : 86 !!:||||||.!! !:!! !:!!! ! ! ||| ! !:!!! ! !!:! IleLeuLeuAlaCysAlaIleSerLeuGlnLysAlaGlnSerValLeuAsnSerAr 3155124 : ATACTTCTGGCGTGTGCGATATCCTTGCAGAAAGCACAGAGTGTGTTAAACAGTCG : 3155180 87 : rGluAsnPheAlaThrLeuIleAsnTyrLeuThr{Un} >>>> Target Intr : 98 !:!!||| !! ! !:!!|||:!! !|||!.!{ } 185 bp gLysAsnValHisArgMetIleAspLeuLeuAsn{Ar}-- 3155181 : TAAGAATGTCCACCGTATGATCGATCTTTTGAAC{AG}cg................ : 3155220 99 : on 1 >>>> {k}AsnAsnThrLeuArgTyrThrIleLeuIleGluThrThrCys : 112 { }!..!:!:!! ! !|||.!!||||||:!!|||:!!||| ++{g}ArgSerSerThrTyrTyrAlaIleLeuValGluSerThrVal 3155221 : .........ag{A}AGAAGCTCAACCTATTACGCGATTCTGGTCGAATCGACGGTG : 3155443 113 : SerPheIleAlaLeuThrSerLeuPheThrAspPheThrHisArgArgLeuThrTy : 131 ! ! !:!::!!!!! !:!!|||!!.! ! ! |||! !||| !!|| MetThrLeuSerPheGlyAlaLeuLeuLysPro---GluSerArgProLeuProTy 3155444 : ATGACTTTGTCTTTCGGTGCACTGTTGAAACCA---GAATCACGTCCTTTACCGTA : 3155497 132 : rArgGluTrpValProTyrAspTyrSerSerPheMetAlaPheCysPheThrTyrA : 150 |||| |||:!!|||! !:!!|||!!! !!!!.!!:.!!!:!|||! ! !|||. rArgIleTrpLeuProCysAsnTyrThrProLeuIleThrTyrCysSerIleTyrT 3155498 : TCGAATTTGGCTACCTTGCAATTACACCCCGTTAATTACTTACTGTTCGATTTACA : 3155554 151 : laGlnGlnMetValSerThrPheHisCysAlaThrValAsnValAlaCysAspThr : 168 !!! ||| |||:!! ! !! !!|||! !:!!:!!||||||||||||!:! hrLeuGlnCysValAlaLeuAlaLeuSerAlaMetMetHisValAlaCysAspSer 3155555 : CTCTCCAATGTGTGGCACTCGCTCTAAGCGCTATGATGCACGTCGCCTGCGACAGT : 3155608 169 : LeuLeuCysGlyPheLeuMetHisLeuCysCysGlnIleGluValLeuGluTyrAr : 187 |||:!!||||||.!.|||:!:||| !! ! !!|||||||||:!!|||! ! !|| LeuIleCysGlyLeuLeuLeuHisThrTyrGlyGlnIleGluIleLeuGlyCysAr 3155609 : TTGATCTGCGGCCTGCTGTTACACACTTACGGCCAGATCGAGATCCTCGGTTGTCG : 3155665 188 : gLeuLysLysLeuSerSerAsnLysAsnSerValGly<->TyrCysIleArgHisH : 205 ||||||| :::......|||::::::!.!..!..! ! |||:!!|||:!!: gLeuLysThrIleLysGluAsnGluSerLysThrSerLysLeuCysValArgTyrA 3155666 : TCTGAaaacgataaaagaaaacgagagtAAGACGTCCAAGTTGTGCGTTCGTTACA : 3155722 206 : isAsnArgIlePhe{Gl} >>>> Target Intron 2 >>>> {u}PheAla : 212 !!|||! !|||!:!{..} 69 bp {!}|||.!! snAsnLeuIleTyr{Ar}++ ++{g}PheThr 3155723 : ACAACCTTATCTAT{CG}gt.........................ag{A}TTCACC : 3155812 213 : ArgLeuValAsnIleArgPheAlaLysIleIleGlyTyrGlnPheIleAlaSerMe : 231 !:!!:!!||| !:!|||! !! ! ||| ! !|||||| !.!|||! AlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAlaValSerTh 3155813 : GCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGTGAGTAC : 3155869 232 : tLeuValIleCysAlaAsnLeuTyrGlnLeuThrLysSerSerLeuSer<->AlaA : 249 !|||!.!|||||| !|||||||||! !|||||| !|||..!:!!!!! !! rLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValThrProIleA 3155870 : GCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGACGCCGATTA : 3155926 250 : snHisValGlnLeuIleMetTyrThrSerCysMetLeuThrGlnIlePheIleTyr : 267 ..:!!|||:!!:!!|||||||||!:!|||||||||||||||||||||||||||||| rgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyr 3155927 : GGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTAC : 3155980 268 : CysTrpPheGlyAsnLysValLysIle : 276 ||||||!:!||||||:!!||||||:!: CysTrpTyrGlyAsnGluValLysLeu 3155981 : TGCTGGTACGGGAACGAAGTTAAGCTG : 3156009 vulgar: CbirOr195PIC 11 276 . KQ414646.1 3154957 3156009 + 383 M 86 258 S 0 2 5 0 2 I 0 181 3 0 2 S 1 1 M 25 75 G 1 0 M 75 225 G 0 3 M 10 30 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 37 111 G 0 3 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3154958 3156009 383 + . gene_id 3 ; sequence CbirOr195PIC ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3154958 3155217 . + . KQ414646.1 exonerate:protein2genome:local exon 3154958 3155217 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3155218 3155219 . + . intron_id 1 ; splice_site "CG" KQ414646.1 exonerate:protein2genome:local intron 3155218 3155402 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3155401 3155402 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3155403 3155738 . + . KQ414646.1 exonerate:protein2genome:local exon 3155403 3155738 . + . insertions 3 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3155739 3155740 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3155739 3155807 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3155806 3155807 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3155808 3156009 . + . KQ414646.1 exonerate:protein2genome:local exon 3155808 3156009 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3154958 3156009 383 + . alignment_id 3 ; Query CbirOr195PIC ; Align 3154958 12 258 ; Align 3155404 99 75 ; Align 3155479 125 225 ; Align 3155707 200 30 ; Align 3155809 211 111 ; Align 3155923 248 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr195PIC Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 354 Query range: 92 -> 276 Target range: 3150017 -> 3150805 93 : IleAsnTyrLeuThrUnkAsnAsnThrLeuArgTyrThrIleLeuIleGluThrTh : 111 :!!.!. ||| ! ::: |||:!! !||||||||||||:!:||| !|| LeuGlnMetLeuTyrArgSerValThrIleTyrTyrThrIleLeuValGluLeuTh 3150018 : TTACAGATGCTTTACAGGTCGGTGACGATTTACTACACGATTCTGGTGGAACTCAC : 3150072 112 : rCysSerPheIleAlaLeuThrSerLeuPheThrAspPheThrHisArgArgLeuT : 130 | ! !! !!!: !|||:!!||||||.!! !||||||!.!.!.|||..!|||. rValLeuCysMetIleLeuSerSerLeuLeuGlyAspPheAsnGluArgGluLeuA 3150073 : GGTCCTCTGTATGATCCTCTCTTCGTTGCTCGGCGACTTTAACGAGCGGGAACTGG : 3150129 131 : hrTyrArgGluTrpValProTyrAspTyrSerSerPheMetAlaPheCysPheThr : 148 !!||||||! |||:!!|||!:!||||||||| ! ! !!:!! !.!!.!! laTyrArgAlaTrpLeuProPheAspTyrSerLeuProThrTyrTyrTyrIleAla 3150130 : CGTACAGAGCCTGGCTGCCCTTCGATTACTCTCTGCCAACTTACTATTACATCGCG : 3150183 149 : TyrAlaGlnGlnMetValSerThrPheHisCysAlaThrValAsnValAlaCysAs : 167 |||!.!!!.|||!!:|||:!! !.!! ! :!! ! !|||||||||||||| TyrValHisGlnIleValAlaLeuIleGlyThrSerLeuSerAsnValAlaCysAs 3150184 : TACGTTCATCAGATCGTCGCGCTGATCGGTACGTCGCTTTCGAACGTCGCCTGCGA : 3150240 168 : pThrLeuLeuCysGlyPheLeuMetHisLeuCysCysGlnIleGluValLeuGluT : 186 |..!:!!:!!||||||!!.|||:!:||| !||| !!||| |||:!!|||:!!: pValIleIleCysGlyLeuLeuValHisAlaCysGlyGlnGlnGluIleLeuLysH 3150241 : CGTGATCATCTGCGGGTTGCTCGTTCACGCTTGCGGCCAACAGGAGATTCTCAAGC : 3150297 187 : yrArgLeuLysLysLeuSerSerAsnLysAsn<->SerValGlyTyrCysIleArg : 203 !!|||:!!|||:!!:!!!!!..!.!.:!!!.. !:!:!!||| ! !:!!||| isArgMetLysGluMetThrGlnGluGlnArgProAsnIleGlyLysIleValArg 3150298 : ACAGAATGAAGGAGATGACGCAGGAACAGAGGCCGAATATCGGGAAAATCGTTCGT : 3150351 204 : HisHisAsnArgIlePhe{Gl} >>>> Target Intron 1 >>>> {u}Ph : 211 !|||:!! !:!!!:!{! } 230 bp {!}!: PheHisAspTyrLeuTyr{Gl}++ ++{y}Ty 3150352 : TTCCACGATTATCTTTAC{GG}gt.........................ag{G}TA : 3150605 212 : eAlaArgLeuValAsnIleArgPheAlaLysIleIleGlyTyrGlnPheIleAlaS : 230 !!.! ! !:!!.!. !:!||| ! !||||||||| |||.!!:!!:!!| rValPheThrMetGlnGluLysPheArgTrpIleIleGlyValGlnLeuLeuSerS 3150606 : CGTTTTCACGATGCAAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTTATCGA : 3150662 231 : erMetLeuValIleCysAlaAsnLeuTyrGlnLeuThrLysSer<->SerLeuSer : 247 ||! !||||||:!:||| !! !||||||:!!|||.!!!!.!!! !!:!!||| erThrLeuValValCysPheIleLeuTyrGluLeuAlaAsnThrProProIleSer 3150663 : GCACGCTGGTAGTGTGTTTCATCCTGTACGAATTGGCGAACACGCCTCCAATCAGC : 3150716 248 : AlaAsnHisValGlnLeuIleMetTyrThrSerCysMetLeuThrGlnIlePheIl : 266 :!!!!.:!!:!!|||!!!:!!:!!||| !:!!||||||:!!||||||||||||.! SerLysTyrLeuGlnPheValLeuTyrLeuAlaCysMetMetThrGlnIlePhePh 3150717 : TCCAAGTACCTGCAATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATCTTCTT : 3150773 267 : eTyrCysTrpPheGlyAsnLysValLysIle : 276 !|||||||||!:!|||.!.:!!:!!|||:!: eTyrCysTrpTyrGlyGluGlnLeuLysLeu 3150774 : TTACTGCTGGTACGGCGAGCAGTTGAAACTG : 3150805 vulgar: CbirOr195PIC 92 276 . KQ414646.1 3150017 3150805 + 354 M 104 312 G 0 3 M 13 39 S 0 2 5 0 2 I 0 226 3 0 2 S 1 1 M 34 102 G 0 3 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150018 3150805 354 + . gene_id 4 ; sequence CbirOr195PIC ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3150018 3150373 . + . KQ414646.1 exonerate:protein2genome:local exon 3150018 3150373 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150374 3150375 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150374 3150603 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150602 3150603 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150604 3150805 . + . KQ414646.1 exonerate:protein2genome:local exon 3150604 3150805 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150018 3150805 354 + . alignment_id 4 ; Query CbirOr195PIC ; Align 3150018 93 312 ; Align 3150333 197 39 ; Align 3150605 211 102 ; Align 3150710 245 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr195PIC Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 249 Query range: 99 -> 272 Target range: 3153117 -> 3153642 100 : AsnThrLeuArgTyrThrIleLeuIleGluThrThrCysSerPheIleAlaLeuTh : 118 |||.!! ! !|||||| !!!!:!:!!:! ! ! ! !!:!! !:!!|| AsnAlaLysAlaTyrThrTyrPheLeuAspIleLeuValValValLeuTrpIleTh 3153118 : AACGCTAAGGCTTACACATATTTCCTGGACATCTTGGTAGTCGTTTTATGGATAAC : 3153172 119 : rSerLeuPheThrAspPheThrHisArgArgLeuThrTyrArgGluTrpValProT : 137 ||||! !|||||||||!:!! !...|||:::... :::||| |||:!!|||| rSerTyrPheThrAspTyrArgArgArgLysPheLysPheArgValTrpLeuProT 3153173 : ATCGTACTTCACGGACTACAGGcgcagaaaattcaaatttcgcgtCTGGTTACCTT : 3153229 138 : yrAspTyrSerSerPheMetAlaPheCysPheThrTyrAlaGlnGlnMetValSer : 155 ||||| !!!!!!! !.!||| !.!.! !|||..!||||||!!:|||!!! yrAspThrThrThrGlnProValPheThrLeuIleTyrCysGlnGlnIleValCys 3153230 : ACGACACTACTACACAACCTGTCTTCACTCTGATCTACTGTCAACAGATCGTCTGC : 3153283 156 : ThrPheHisCysAlaThrValAsnValAlaCysAspThrLeuLeuCysGlyPheLe : 174 |||!:::!! !!!.!!.!:!!|||||| !|||||| !|||!!! !!|||.!.:! ThrTrpTyrSerValAsnIleAsnValIleCysAspCysLeuPheSerGlyLeuMe 3153284 : ACGTGGTACAGCGTGAATATTAACGTCATTTGCGACTGCCTGTTCAGCGGCCTGAT : 3153340 175 : uMetHisLeuCysCysGlnIleGluValLeuGluTyrArgLeuLysLys<-><->L : 191 !!!:!!.:!!|||! :!!..! !:!!:!! !! !! !::!!!. | tIleGlnIleCysSerIleLeuArgLysMetLysProThrArgArgAsnCysValL 3153341 : GATACAGATTTGCTCAATCTTACGGAAGATGAAACCTACTCGGCGAAACTGTGTGC : 3153397 192 : euSerSerAsnLysAsnSerValGlyTyrCysIleArgHisHisAsnArgIlePhe : 209 || !!!!! ! !..! !..!.!! ! ! ! :::... ...||| !! euValThrIleIleArgTyrThrSerGlnSerArgGlnGluIleLysArgTyrVal 3153398 : TCGTCACCATAATCAGATATACAAGCCAGTCTCGacaagaaattaaacgatacgTT : 3153451 210 : GluPheAlaArgLeuValAsnIleArgPheAlaLysIleIleGlyTyrGlnPheIl : 228 !!!.|||!:!:!!|||||| !:!.!!!.!!!.:!! .!! |||||| ***LeuAlaGlnIleValAsnGluLysLeuGlyAsnValSerSerIleGlnPheAl 3153452 : TGATTGGCGCAAATAGTGAACGAGAAGCTTGGAAATGTCTCGAGTATACAGTTCGC : 3153508 229 : eAlaSerMetLeuValIleCysAlaAsnLeuTyrGlnLeuThrLysSerSerLeuS : 247 !|||! !!.!|||||| !|||||||||!:!:!!:!! !! !..!|||. aIleSerThrGlyAlaIleCysPheAsnLeuTyrArgMetSerValIleGluLeuG 3153509 : GATAAGCACAGGAGCGATATGCTTCAATCTCTATCGAATGTCGGTGATAGAACTCG : 3153565 248 : erAlaAsnHisValGlnLeuIleMetTyrThrSerCysMetLeuThrGlnIlePhe : 265 !! !!!!. !|||:!! !:!!! !||| !|||:!:|||.!!||||||||| lyProLysPheValGluAlaLeuThrIleThrValCysLeuLeuAlaGlnIlePhe 3153566 : GTCCAAAGTTTGTGGAAGCGTTAACTATCACAGTATGCTTACTCGCGCAGATATTT : 3153619 266 : IleTyrCysTrpPheGlyAsn : 272 !|||||||||!::|||||| TyrTyrCysTrpTyrGlyAsn 3153620 : TACTATTGTTGGTAcggtaac : 3153642 vulgar: CbirOr195PIC 99 272 . KQ414646.1 3153117 3153642 + 249 M 91 273 G 0 6 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153118 3153642 249 + . gene_id 5 ; sequence CbirOr195PIC ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153118 3153642 . + . KQ414646.1 exonerate:protein2genome:local exon 3153118 3153642 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153118 3153642 249 + . alignment_id 5 ; Query CbirOr195PIC ; Align 3153118 100 273 ; Align 3153397 191 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr195PIC Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 205 -> 276 Target range: 3178372 -> 3178588 206 : AsnArgIlePheGluPheAlaArgLeuValAsnIleArgPheAlaLysIleIleGl : 224 ||| ||| ...|||.!!!:! !||||||! ! !||| ! ! !!:||| AsnPheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePh 3178373 : aatttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTT : 3178427 225 : yTyrGlnPheIleAlaSerMetLeuValIleCysAlaAsnLeuTyrGlnLeu<->T : 242 ! |||||| ! !||| ! !|||:!:||| !!:!:!!|||:!!:!! | eLeuGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerT 3178428 : CCTGCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGA : 3178484 243 : hrLysSerSerLeuSerAlaAsnHisValGlnLeuIleMetTyrThrSerCysMet : 260 ||! !:! !!!!!||| !||| !||| !! ! ! ||| !!!!|||||| hrIleAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMet 3178485 : CGATTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATG : 3178538 261 : LeuThrGlnIlePheIleTyrCysTrpPheGlyAsnLysValLysIle : 276 |||||||||:!:!:!:!!||||||||||||||||||:!!|||! !:!: LeuThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeu 3178539 : CTCACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTG : 3178588 vulgar: CbirOr195PIC 205 276 . KQ414646.1 3178372 3178588 + 141 M 36 108 G 0 3 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178373 3178588 141 + . gene_id 6 ; sequence CbirOr195PIC ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178373 3178588 . + . KQ414646.1 exonerate:protein2genome:local exon 3178373 3178588 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178373 3178588 141 + . alignment_id 6 ; Query CbirOr195PIC ; Align 3178373 206 108 ; Align 3178484 242 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr195PIC Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 66 -> 193 Target range: 3177814 -> 3178195 67 : AsnMetLeuLeuThrThrSerAlaAlaSerTyrLysMetPheIleMetTrpIleAs : 85 ::::!!|||:!!||| !!!! !! !! ! ! ::::::|||:::... ...:: SerLeuLeuIleThrLeuThrGlnAspPheGlnGluIlePheLeuGlnIlePheSe 3177815 : TCGTTGTTAATTACTCTAACGCAGGATTTTCAGGagatttttctccaaattttctc : 3177869 86 : nTyrGluAsnPheAlaThrLeuIleAsnTyrLeuThrUnkAsnAsnThrLeuArgT : 104 :! !!|||::!!.!! !:!:.!. !! !:!! !!. |||:!! !! rSerLeuTyrPheSerAsnTyrLeuGlnValSerSerArgLysLeuThrIleTyrC 3177870 : cTCGCTCTATTTTAGCAATTACTTGCAAGTTTCTTCCAGAAAACTGACAATCTACT : 3177926 105 : yrThrIleLeuIleGluThrThrCysSerPheIleAlaLeuThrSerLeuPheThr : 122 ! !||||||! !|||:!!.!!...! !!!. !.!!:!!.!!..!! ! ! ! ysGluIleLeuAsnGluSerAlaAlaPheLeuAlaThrValAlaGlnTyrAsnGlu 3177927 : GCGAGATCCTGAACGAATCCGCCGCATTCTTAGCTACGGTAGCACAGTACAACGAA : 3177980 123 : AspPheThrHisArgArgLeuThrTyrArgGluTrpValProTyrAspTyrSerSe : 141 !.!. ! !!:!! !||| !! !!!:|||||||||||||||! ||||| PheIleArgSerLysThrLeuProIleSerAspTrpValProTyrAspLeuSerSe 3177981 : TTCATACGCTCCAAGACTTTGCCAATATCCGACTGGGTGCCTTACGATTTGTCCTC : 3178037 142 : rPheMetAlaPheCysPheThrTyrAlaGlnGlnMetValSerThrPheHisCysA : 160 | ! !!:! .!.:!! !!!.|||! !:!!.!! !.!. !|||| rGlnLysLeuTyrThrIleSerLeuLeuHisGlnThrIleGlyLeuMetValCysA 3178038 : GCAAAAATTGTACACGATATCTCTGTTGCATCAAACGATAGGCCTGATGGTCTGTG : 3178094 161 : laThrValAsnValAlaCysAspThrLeuLeuCysGlyPheLeuMetHisLeuCys : 178 ||!.!..!!:!|||||| !!!:||||||:!!...|||.!.:!!!!:!!. ! !! laAsnThrSerValAlaAsnGluThrLeuIleAlaGlyLeuMetIleGlnAlaGly 3178095 : CGAACACCAGCGTGGCAAACGAAACACTTATCGCAGGGCTGATGATACAAGCTGGC : 3178148 179 : CysGlnIleGluValLeuGluTyrArgLeuLysLysLeuSerSer : 193 ...|||.!!|||:!!!!! :!!||| !!:!!!.|||!!!:!! AlaGlnPheGluIlePheCysHisArgAlaArgAsnLeuThrAla 3178149 : GCGCAATTCGAGATATTTTGCCATCGAGCGAGAAATCTAACCGCC : 3178195 vulgar: CbirOr195PIC 66 193 . KQ414646.1 3177814 3178195 + 117 M 127 381 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3177815 3178195 117 + . gene_id 7 ; sequence CbirOr195PIC ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3177815 3178195 . + . KQ414646.1 exonerate:protein2genome:local exon 3177815 3178195 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3177815 3178195 117 + . alignment_id 7 ; Query CbirOr195PIC ; Align 3177815 67 381 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr195PIC Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 209 -> 275 Target range: 3180460 -> 3180661 210 : GluPheAlaArgLeuValAsnIleArgPheAlaLysIleIleGlyTyrGlnPheIl : 228 ...!!.|||..!:!!:!!||| !!!!.!. ! !! !!: ! !||||||.! SerLeuAlaGluIleMetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePh 3180461 : AGTTTAGCTGAAATAATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTT : 3180515 229 : eAlaSerMetLeuValIleCysAlaAsnLeuTyrGlnLeuThrLysSerSer<->L : 246 !!.!|||.!.:!!||||||||| !!:!||| !|||||| !!!.:!!..! | eGlySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleL 3180516 : CGGAAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTC : 3180572 247 : euSerAlaAsnHisValGlnLeuIleMetTyrThrSerCysMetLeuThrGlnIle : 264 |||||.!!.!. !:!! ! !|||...||| ||| :::||| !|||! ! euSerThrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSer 3180573 : TCAGCACCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGC : 3180626 265 : PheIleTyrCysTrpPheGlyAsnLysValLys : 275 |||:!!|||||||||!:!||||||:!!|||!:! PheLeuTyrCysTrpTyrGlyAsnGluValArg 3180627 : TTTCTTTACTGTTGGTACGGAAACGAAGTGAGA : 3180661 vulgar: CbirOr195PIC 209 275 . KQ414646.1 3180460 3180661 + 112 M 36 108 G 0 3 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180461 3180661 112 + . gene_id 8 ; sequence CbirOr195PIC ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180461 3180661 . + . KQ414646.1 exonerate:protein2genome:local exon 3180461 3180661 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180461 3180661 112 + . alignment_id 8 ; Query CbirOr195PIC ; Align 3180461 210 108 ; Align 3180572 246 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr196 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 226 Query range: 122 -> 233 Target range: 1946909 -> 1946573 123 : AsnThrLeuArgTyrThrIleLeuIleGluThrSerTrpSerCysSerGlyLeuTh : 141 ||||||:!! !!||| !! |||::: ||| !! !! !! ! !:!!! AsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrValAr 1946909 : AACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATATACGTGAG : 1946855 142 : rSerLeuLeuAlaAspPheArgHisArgArgLeuThrTyrArgGluTrpValProT : 160 !||||||||| !||||||!!!:!!|||!:!|||! !!:!|||! !|||:!!|||| gSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProT 1946854 : ATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCT : 1946798 161 : yrAspTyrSerSerTyrMetValPheCysValThrTyrAlaHisGlnPheLeuSer : 178 ||||||||||| !! :!!||| !:!!|||!:!!.!|||||| !:!!:!! yrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAlaIleAla 1946797 : ACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCC : 1946744 179 : ThrPheTyrCysAlaThrValAsnValAlaCysAspThrLeuIleCysGlyLeuLe : 197 .!! |||..!||| !!:!|||.!! |||:!!||| ! !|||||||| AlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLe 1946743 : GCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTT : 1946687 198 : uMetHisValCysCysGlnIleGluIleLeuGluTyrArgLeuLysLysLeu<->S : 215 |!!::!!:!!! !||||||.!!||||||||||||:!!||||||!:!!!.:!! ! uIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysT 1946686 : GATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAA : 1946630 216 : erArgAsnAlaAspThrLeuAspTyrCysIleArgHisHisAsnSerIlePheGlu : 233 !!..!.!.! !|||:!!:!! ! ! ||| !!:!||||||:!! !!|||!:!:!! hrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIleTyrGln 1946629 : CTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTATATACCAG : 1946576 vulgar: CbirOr196 122 233 . KQ414661.1 1946909 1946573 - 226 M 92 276 G 0 3 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946574 1946909 226 - . gene_id 1 ; sequence CbirOr196 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946574 1946909 . - . KQ414661.1 exonerate:protein2genome:local exon 1946574 1946909 . - . insertions 3 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1946574 1946909 226 - . alignment_id 1 ; Query CbirOr196 ; Align 1946910 123 276 ; Align 1946631 215 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr196 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 178 Query range: 298 -> 369 Target range: 1945973 -> 1945686 299 : SerLysSerLeuGluLeuThrAspArgIlePheGlnThrAspTrpProMetLeuAs : 317 ||| !!||||||:!!||| !! !!! !||||||!!.!:!|||||| !! ||||| Ser***SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSerLeuAs 1945973 : TCGTAGAGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAA : 1945919 318 : nSerSerIleLysAsnSerLeuLeuIleIleMetLysArgAlaIleIleProIleG : 336 |!:!!:!:!!! !..:!!|||||||||!!:|||!:!||||||:!:! ||||||| nAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgProIleG 1945918 : CAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAG : 1945862 337 : luPheThrThrAlaHisIleIleSerLeuAsnLeuGluSerPheValAla >>>> : 353 ||||||||!:! !|||:!!:!!|||:!!|||||||||||||||:!!||| luPheThrSerIleHisValValSerValAsnLeuGluSerPheMetAla++ 1945861 : AGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt.... : 1945809 354 : Target Intron 1 >>>> LeuLeuLysIleSerTyrSerAlaTyrAsnLeu : 363 74 bp :!!:!!|||! !||||||||||||!:!|||:!! ++ValIleLysThrSerTyrSerAlaPheAsnMet 1945808 : .....................agGTAATAAAAACTTCGTACTCCGCGTTCAACATG : 1945707 364 : IleValArgMetGlnGln : 369 ||| !!:!! :!!||| IleGlnGlnSerLysGln 1945706 : ATCCAACAAAGCAAACAA : 1945687 vulgar: CbirOr196 298 369 . KQ414661.1 1945973 1945686 - 178 M 54 162 5 0 2 I 0 70 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945687 1945973 178 - . gene_id 2 ; sequence CbirOr196 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1945812 1945973 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1945973 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945687 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945687 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945687 1945973 178 - . alignment_id 2 ; Query CbirOr196 ; Align 1945974 299 162 ; Align 1945738 353 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr196 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 144 Query range: 300 -> 366 Target range: 1948618 -> 1948287 301 : SerLeuGluLeuThrAspArgIlePheGlnThrAspTrpProMetLeuAsnSerSe : 319 |||||||||:!!:!!:!!! !||||||!!. !|||||| !! !!!!:!!!.!:! SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 1948618 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 1948564 320 : rIleLysAsnSerLeuLeuIleIleMetLysArgAlaIleIleProIleGluPheT : 338 !! !|||...!:!:!!|||! !!!:|||! !|||||| |||||||||.!!! aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 1948563 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 1948507 339 : hrThrAlaHisIleIleSerLeuAsnLeuGluSerPheValAla >>>> Targe : 353 !!:!!.!!.!:!::!!|||:!!||||||!!:|||||||||||| leSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 1948506 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.......... : 1948460 354 : t Intron 1 >>>> LeuLeuLysIleSerTyrSerAlaTyrAsnLeuIleVal : 365 133 bp |||||||||! !||||||||||||||||||:!!:!! ! ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGln 1948459 : ...............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAA : 1948293 366 : Arg : 366 ||| Arg 1948292 : CGC : 1948288 vulgar: CbirOr196 300 366 . KQ414661.1 1948618 1948287 - 144 M 52 156 5 0 2 I 0 129 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948288 1948618 144 - . gene_id 3 ; sequence CbirOr196 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1948463 1948618 . - . KQ414661.1 exonerate:protein2genome:local exon 1948463 1948618 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1948461 1948462 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1948330 1948462 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1948330 1948331 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1948288 1948329 . - . KQ414661.1 exonerate:protein2genome:local exon 1948288 1948329 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948288 1948618 144 - . alignment_id 3 ; Query CbirOr196 ; Align 1948619 301 156 ; Align 1948330 353 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr202 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 247 -> 313 Target range: 1946242 -> 1946047 248 : ArgArgIleGlnSerLeuPheValTrpThrValThrValLeuPheIlePheSerMe : 266 !:!!:!:!:.!...! !||| ! !! !:!!! ! !! !||| !.!.||||| LysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMe 1946242 : AAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCAT : 1946188 267 : tValThrLeuCysThrSerIlePheGlnMetSerLysLysGluLeuLeuSerAlaL : 285 | !..!:!!||| !!:!:!!!:!!:!|||!!!:!!! :!! :!!......| tSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---MetAspThrL 1946187 : GTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---ATGGAcacga : 1946134 286 : ysPhePheSerLeuLeuLeuTyrLeuGlyCysMetLeuPheGlnValPheLeuTyr : 303 ||||| ...::::!!||||||! ! !|||! :!! |||:!!|||! !||| ysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyr 1946133 : aattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTAT : 1946080 304 : CysTrpTyrGlyAsnGluLeuGluLeuLys : 313 ||||||||||||||||||:!!:!! !||| CysTrpTyrGlyAsnGluValLysAspLys 1946079 : TGCTGGTACGGCAACGAAGTGAAAGATAAG : 1946048 vulgar: CbirOr202 247 313 . KQ414661.1 1946242 1946047 - 113 M 33 99 G 1 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946048 1946242 113 - . gene_id 1 ; sequence CbirOr202 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946048 1946242 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946242 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946048 1946242 113 - . alignment_id 1 ; Query CbirOr202 ; Align 1946243 248 99 ; Align 1946144 282 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr198 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 431 Query range: 0 -> 306 Target range: 1947382 -> 1946038 1 : MetSerValMetLysSerThrLeuLeuIleCysThrIleAlaGlyCysTrpGlnPr : 19 |||||||||:!!|||||||||! !|||:!: !! !|||:!!||||||!::! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 1947382 : ATGAGCGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTATCTGCC : 1947328 20 : oProSerTrpLysLeuSerPheLysTyrIleIleIleTyrArgThrTyrAlaMetP : 38 |! !||||||! ! ! !!|||:!! !:!:|||!.!! !|||!.!:::| oHisSerTrpThrThrProPheGluArg---SerLeuTyrAsnIleTyrGlyValP 1947327 : CCATTCGTGGACAACACCGTTCGAAAGG---TCTTTGTACAATATCTACGGGGtgt : 1947274 39 : heLeuThrSerLeuLeuTyrLeuPheThrIleSerGluPheMetTyrIleIleLeu : 56 || |||||| ! !.!!..!:!!|||:!!.!.:!: !!:!! :!! heSerPheLeuLeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIle 1947273 : tctcctttcttcttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATC : 1947220 57 : AsnAlaAspSerSerAspAspTyrThrAspSerLeuTyrMetLeuLeuSerIlePh : 75 |||!.!!!:|||..!||||||!:!!::|||:::... ::: ! ! !:!:|| AsnValGluSerGlnAspAspPheSerAspAsnPheSerValThrAlaValValPh 1947219 : AACGTGGAGAGCCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTT : 1947163 76 : eValThrAlaTyrLysGlnValSerMetTrpIleAsnTyrLysArgIleMetAlaI : 94 |:!!||| !!:!|||! !! !:!: |||... ! !!.!.!!!!: !: eLeuThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheL 1947162 : TCTCACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTC : 1947106 95 : leIleAsnValLeuSerGluLysLeuPheAlaSerCysAspSerCysGluValThr : 112 !:|||:!!..!|||..!.!.|||! !|||:!! !! |||!!! ||| ! ! euIleAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGlu 1947105 : TGATCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAG : 1947052 113 : IleGlnGluLysPheGluLysMetSer{Gl} >>>> Target Intron 1 >> : 122 |||::!! !||||||||||||!!:!!!{:!} 107 bp IleArgAlaLysPheGluLysIleThr{Gl}++ 1947051 : ATTAGAGCGAAATTCGAGAAGATCACC{GA}gt....................... : 1947018 123 : >> {n}ThrAsnThrSerArgTyrLeuAsnIleValMetLeuSerValIleThrI : 139 {!} !||||||! ! !!|||! !!::::::::::::::|||..!.!! !| ++{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheI 1947017 : ..ag{A}TGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTA : 1946864 140 : lePheSerMetSerIlePheThrAsnLeuMetLysArgAsnLeuThrTyrLysAla : 157 ||!:! !! |||:!!!!.! !:!!!!!! !!.|||!!.|||! !!:!::!||| leTyrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAla 1946863 : TATACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCA : 1946810 158 : TrpIleProPheAspTyrSerSerProAlaValPheTyrIleValTyrAlaHisGl : 176 |||||||||!:!||||||||| !! !! !!:!!||| !:!!..!!:!!.!||||| TrpIleProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGl 1946809 : TGGATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCA : 1946753 177 : nLeuLeuAlaMetValThrSerGlyIleValAsnIleAlaCysAspSerLeuLeuC : 195 | !:!!||| !..!! !!!! !!! ! !!:!:!!.!! |||||||||! ! nAlaIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrT 1946752 : AGCTATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACA : 1946696 196 : ysGlyPheLeuLeuTyrIleCysCysGlnLeuGluIleLeuGluTyrArgLeuThr : 213 !|||!!.|||:!! !!|||! !||||||!!!||||||||||||:!!||||||! ! hrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArg 1946695 : CTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGG : 1946642 214 : LysMetAlaCysGlyGln<->TyrIleLeuArgAspCysIleIleTyrHisAsnTy : 231 !!.:!: ! !! !||| !! !:!!!:!.!.||| ! !:!!|||:!! AsnValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspAr 1946641 : AACGTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCG : 1946585 232 : rIlePhe{Gl} >>>> Target Intron 2 >>>> {u}TyrThrTyrAlaV : 239 !|||!:!{:!} 325 bp {!}!:!:!! ! !| gIleTyr{Gl}++ ++{n}PheSerLysLysV 1946584 : TATATAC{CA}gt.........................ag{A}TTTTCGAAAAAGG : 1946236 240 : alAsn<->ValPheAlaArgIleIleAlaIleGlnPheValAlaSerAlaIleVal : 256 ||||| ! !||| !! !|||:!: ! !|||||| ! !||| ! ||| alAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerVal 1946235 : TGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTG : 1946182 257 : ValCysSerAsnLeuTyrArgIlePheValAlaValValGluAsnAspTyrIleTh : 275 :!!|||! !||||||||||||!!: ! ! !:!!!!:... :::::: IleCysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGl 1946181 : ATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcga : 1946125 276 : rThrLeuIleIleSerThrTyrThrPheAlaIleLeuMetGlnIlePheLeuTyrC : 294 :!!:!! |||:!!|||..!! !:!!! !|||||||||! !|||| uIleIleLeu---------TyrSerPheCysThrIleThrGlnIlePheTyrTyrC 1946124 : aatcaTACTC---------TACTCTTTCTGCACTATCACGCAGATATTTTACTATT : 1946077 295 : ysTrpPheGlyAsnLysValLysLeuLysSerLeuHis : 306 |||||!:!||||||:!!|||||| !||| ! !||| ysTrpTyrGlyAsnGluValLysAspLysValAspHis 1946076 : GCTGGTACGGCAACGAAGTGAAAGATAAGGTTGATCAT : 1946039 vulgar: CbirOr198 0 306 . KQ414661.1 1947382 1946038 - 431 M 28 84 G 1 0 M 92 276 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 97 291 G 0 3 M 14 42 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 6 18 G 0 3 M 38 114 G 3 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946039 1947382 431 - . gene_id 1 ; sequence CbirOr198 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1947021 1947382 . - . KQ414661.1 exonerate:protein2genome:local exon 1947021 1947382 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local splice5 1947019 1947020 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946914 1947020 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1946914 1946915 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946575 1946913 . - . KQ414661.1 exonerate:protein2genome:local exon 1946575 1946913 . - . insertions 3 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946573 1946574 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946250 1946574 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1946250 1946251 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946039 1946249 . - . KQ414661.1 exonerate:protein2genome:local exon 1946039 1946249 . - . insertions 3 ; deletions 3 KQ414661.1 exonerate:protein2genome:local similarity 1946039 1947382 431 - . alignment_id 1 ; Query CbirOr198 ; Align 1947383 1 84 ; Align 1947299 30 276 ; Align 1946913 123 291 ; Align 1946619 220 42 ; Align 1946249 235 18 ; Align 1946228 241 114 ; Align 1946114 282 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr200CTE Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 543 Query range: 0 -> 303 Target range: 1947382 -> 1946038 1 : MetAsnValLeuLysPheThrLeuIleIleCysGlyPheAlaGlyCysTrpGlnPr : 19 |||!:!|||||||||! !|||! !:!!:!: ! !.!!:!!||||||!::! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 1947382 : ATGAGCGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTATCTGCC : 1947328 20 : oLeuSerTrpThrSerLeuSerLysAsnIleMetTyrLysAlaTyrAlaThrPheL : 38 |! !|||||||||!!!! !! !:!!!.. !:!!|||!!. !|||!.!...||| oHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheS 1947327 : CCATTCGTGGACAACACCGTTCGAAAGGTCTTTGTACAATATCTACGGGGtgttct : 1947271 39 : euIleSerSerLeuTyrIlePheLeuIleSerGlnPheIleHisValAlaLeuAsn : 56 ... ||| !! !.!!:!!:!!||||||.!.:!! !!||||||:!!||| erPheLeuLeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIleAsn 1947270 : cctttcttcttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCAAC : 1947217 57 : ValGlyAsnSerAspGluPheThrAspAlaLeuTyrMetMetLeuThrIleLeuVa : 75 |||! !!:!..!|||!!:|||!::||| ... ::: !..!:!:!!!:! ValGluSerGlnAspAspPheSerAspAsnPheSerValThrAlaValValPheLe 1947216 : GTGGAGAGCCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTTCT : 1947160 76 : lAlaGlyTyrLysGlnValTyrMetTrpIleAspArgLysAsnPheMetIleIleI : 94 !.!! !!!:!|||! ! !:!: ||| ||| !||||||!!:.!!:!:| uThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuI 1947159 : CACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGA : 1947103 95 : leAsnValLeuThrGluGluProPheAlaProCysGluSerHisGluLeuMetIle : 112 ||:!!..!||| !.!.:!!||||||:!!||| !!:!!!.!.||| ! !||| leAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIle 1947102 : TCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATT : 1947049 113 : GlnGluLysPheGluLysIleAla{Gl} >>>> Target Intron 1 >>>> : 121 ::!! !|||||||||||||||.!!{:!} 107 bp ArgAlaLysPheGluLysIleThr{Gl}++ + 1947048 : AGAGCGAAATTCGAGAAGATCACC{GA}gt.........................a : 1946915 122 : {n}ThrAsnThrLeuArgTyrLeuIleLeuValLeuMetSerIleSerSerIleI : 139 {!} !||||||:!! !!|||! !! |||:::|||:::||| ! !! !||| +{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleT 1946914 : g{A}TGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATAT : 1946861 140 : leLeuThrSerValPheThrValLeuThrAsnHisAsnLeuThrTyrAsnThrTrp : 157 !:!!! !|||:!!!!.! !! !!!!!:!|||...!!.|||! !!:!....!!||| yrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrp 1946860 : ACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGG : 1946807 158 : IleProPheAsnTyrSerProProAlaValPhePheLeuValTyrThrHisGlnLe : 176 ||||||!:!:!!||||||||| !! !!:!!|||.!!|||..!!:!..!|||||| IleProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAl 1946806 : ATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGC : 1946750 177 : uIleAlaMetSerThrSerGlyValValAsnValAlaCysAspSerLeuLeuCysG : 195 !|||||| !!!!! !!!! !!..! !!:!|||.!! |||||||||! ! !| aIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrG 1946749 : TATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTG : 1946693 196 : lyPheLeuLeuTyrIleCysCysGlnLeuGluIleLeuArgTyrArgLeuSerLys : 213 ||!!.|||:!! !!|||! !||||||!!!|||||||||..!:!!||||||!!!!!. lyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsn 1946692 : GCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAAC : 1946639 214 : IleIleHisGlyGln<->AspIleLeuHisAspCysValTyrHisHisAsnArgIl : 231 :!!! ! !! !||| ||| !:!! ! .!.|||!.! ! ||||||:!!||||| ValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIl 1946638 : GTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTAT : 1946582 232 : ePhe{Gl} >>>> Target Intron 2 >>>> {u}TyrAlaTyrIleValA : 239 |!:!{:!} 325 bp {!}!:!:!! ! ! |||| eTyr{Gl}++ ++{n}PheSerLysLysValA 1946581 : ATAC{CA}gt.........................ag{A}TTTTCGAAAAAGGTGA : 1946233 240 : snLysLysPheAlaValIleIleThrIleGlnPheAlaValSerMetLeuValVal : 257 ||:!!:!!||| !:!!|||:!:! ! !||||||..!:!!||||||! !|||:!! snGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIle 1946232 : ACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATC : 1946179 258 : CysSerAsnLeuTyrArgIleAlaMetAlaAlaAsnTyrMetSerTyrIleProLe : 276 |||! !||||||||||||!!:.!!..! ! !! ! ...:::::: :: CysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIl 1946178 : TGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaat : 1946122 277 : uValValTyrThrSerAlaIleLeuMetGlnIlePheIleTyrCysTrpPheGlyA : 295 ::!!:!!|||:!!! !..!! !:!!! !||||||||| !|||||||||!:!|||| eIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyA 1946121 : caTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGGCA : 1946065 296 : snGluValLysLeuLysSerLeuHis : 303 ||||||||||| !||| ! !||| snGluValLysAspLysValAspHis 1946064 : ACGAAGTGAAAGATAAGGTTGATCAT : 1946039 vulgar: CbirOr200CTE 0 303 . KQ414661.1 1947382 1946038 - 543 M 120 360 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 97 291 G 0 3 M 14 42 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946039 1947382 543 - . gene_id 1 ; sequence CbirOr200CTE ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1947021 1947382 . - . KQ414661.1 exonerate:protein2genome:local exon 1947021 1947382 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1947019 1947020 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946914 1947020 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1946914 1946915 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946575 1946913 . - . KQ414661.1 exonerate:protein2genome:local exon 1946575 1946913 . - . insertions 3 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946573 1946574 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946250 1946574 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1946250 1946251 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946039 1946249 . - . KQ414661.1 exonerate:protein2genome:local exon 1946039 1946249 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1946039 1947382 543 - . alignment_id 1 ; Query CbirOr200CTE ; Align 1947383 1 360 ; Align 1946913 122 291 ; Align 1946619 219 42 ; Align 1946249 234 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr200CTE Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 300 -> 362 Target range: 1948618 -> 1948432 301 : SerLeuHisLeuMetAsnAsnIleTyrAsnMetGluTrpThrThrLeuAsnSerSe : 319 ||||||.!.:!! |||! |||!:!:!!:!:!!:|||||| !!!!!:!!!.!:! SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 1948618 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 1948564 320 : rSerLysLysAlaLeuLeuPheIleMetLysArgAlaMetValProIleGluPheH : 338 !!!!|||::! !:!!||| !!!:|||! !|||||| ! !|||||||||.!! aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 1948563 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 1948507 339 : isSerSerTyrIleIleThrMetAsnLeuAspSerPheValAlaValLeuLysMet : 356 !||| ! !:!::!!:!!:!!|||||||||||||||||||||||| !! leSerValArgValLeuSerValAsnLeuAspSerPheValAlaValSerIleAsp 1948506 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTGTCAGTATtgat : 1948453 357 : SerTyrSerValPheAsn : 362 ...|||... ||| LysTyrGlnLysThrAsn 1948452 : aaatatcaaaaaactaat : 1948433 vulgar: CbirOr200CTE 300 362 . KQ414661.1 1948618 1948432 - 122 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948433 1948618 122 - . gene_id 2 ; sequence CbirOr200CTE ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1948433 1948618 . - . KQ414661.1 exonerate:protein2genome:local exon 1948433 1948618 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948433 1948618 122 - . alignment_id 2 ; Query CbirOr200CTE ; Align 1948619 301 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr193 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 317 Query range: 231 -> 367 Target range: 1946251 -> 1945689 232 : LysPheAlaTyrThrIleAsnGluAsnPheArgIleIleLeuAlaIleGlnPheAl : 250 !:!|||:!! ! ! !:!:||||||.!.|||!:!:!:|||||| ! !||||||.. ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 1946251 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 1946197 251 : aValSerThrLeuValValCysSerAsnMetTyrGlnIleAlaArgThrSerLeuS : 269 !:!!|||! !! !|||:!!|||! !|||:!:|||!:!!!:.!!!:!! !!.!:!!. sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetA 1946196 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGG : 1946140 270 : erAlaGluTyrIleProLeuMetLeuTyrThrSerCysMetPheThrGlnIleLeu : 287 .....::::::::: ::::!:||||||:!!! !|||! .!!|||||||||!!! spThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePhe 1946139 : AcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTT : 1946086 288 : IleTyrCysTrpTyrGlyAsnGluValLysLeuLys >>>> Target Intron : 300 !||||||||||||||||||||||||||| !||| 80 bp TyrTyrCysTrpTyrGlyAsnGluValLysAspLys++ 1946085 : TACTATTGCTGGTACGGCAACGAAGTGAAAGATAAGgt.................. : 1946045 301 : 1 >>>> SerValGlnLeuAlaAsnGluIlePheGluMetAspTrpIleThrVa : 315 |||:!!|||||| !! !! !||||||.!.! ||||||! :!!:! ++SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSerLe 1946044 : .......agAGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTT : 1945922 316 : lAspLysGluValLysGluGlyLeuMetMetIleMetAsnArgSerLeuValProI : 334 !:!!!!..!.|||! ..!!.!|||:!:!!:!!:|||!..|||:!!:!! !|||| uAsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgProI 1945921 : GAACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAA : 1945865 335 : leGluPheSerSerAlaHisIlePheThrValAsnLeuAspSerPheValLys > : 352 ||||||||!!!||| !|||:!! !!:!!|||||||||!!:||||||:!! ! leGluPheThrSerIleHisValValSerValAsnLeuGluSerPheMetAla++ 1945864 : TAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt. : 1945809 353 : >>> Target Intron 2 >>>> IleLeuLysAlaSerTyrSerAlaTyrSer : 361 74 bp :!!:!!|||.!!||||||||||||!:!!:! ++ValIleLysThrSerTyrSerAlaPheAsn 1945808 : ........................agGTAATAAAAACTTCGTACTCCGCGTTCAAC : 1945710 362 : IleLeuGlnGlnMetLys : 367 !!::!!||||||! ||| MetIleGlnGlnSerLys 1945709 : ATGATCCAACAAAGCAAA : 1945690 vulgar: CbirOr193 231 367 . KQ414661.1 1946251 1945689 - 317 M 68 204 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945690 1946251 317 - . gene_id 1 ; sequence CbirOr193 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1946048 1946251 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946251 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946046 1946047 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945968 1946047 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1945968 1945969 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945812 1945967 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1945967 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945690 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945690 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945690 1946251 317 - . alignment_id 1 ; Query CbirOr193 ; Align 1946252 232 204 ; Align 1945968 300 156 ; Align 1945738 352 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr193 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 147 Query range: 299 -> 365 Target range: 1948618 -> 1948287 300 : SerValGlnLeuAlaAsnGluIlePheGluMetAspTrpIleThrValAspLysGl : 318 |||:!!:!!:!!:!!||| !||||||.!.:!:||||||! ! !! !!||||||! SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 1948618 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 1948564 319 : uValLysGluGlyLeuMetMetIleMetAsnArgSerLeuValProIleGluPheS : 337 ..!|||..!..!:!!:!:! !!:|||! |||:!!! ! !|||||||||.!!! aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 1948563 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 1948507 338 : erSerAlaHisIlePheThrValAsnLeuAspSerPheValLys >>>> Targe : 352 !|||!.!!.!:!:.!!:!!||||||||||||||||||||| leSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 1948506 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.......... : 1948460 353 : t Intron 1 >>>> IleLeuLysAlaSerTyrSerAlaTyrSerIleLeuGln : 364 133 bp :!:||||||.!!|||||||||||||||!:!:!!|||||| ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGln 1948459 : ...............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAA : 1948293 365 : Gln : 365 !:: Arg 1948292 : CGC : 1948288 vulgar: CbirOr193 299 365 . KQ414661.1 1948618 1948287 - 147 M 52 156 5 0 2 I 0 129 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948288 1948618 147 - . gene_id 2 ; sequence CbirOr193 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1948463 1948618 . - . KQ414661.1 exonerate:protein2genome:local exon 1948463 1948618 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1948461 1948462 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1948330 1948462 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1948330 1948331 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1948288 1948329 . - . KQ414661.1 exonerate:protein2genome:local exon 1948288 1948329 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948288 1948618 147 - . alignment_id 2 ; Query CbirOr193 ; Align 1948619 300 156 ; Align 1948330 352 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr197 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 367 Query range: 120 -> 297 Target range: 1946906 -> 1946047 121 : AlaLeuTrpTyrValIleLeuValGluThrThrValGlyIleMetIleValGlySe : 139 .!!:!! ! ||| !! |||::: :::..! !.!!!!: !||| !!|| ThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrValArgSe 1946906 : ACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATATACGTGAGATC : 1946852 140 : rAlaPheThrAspGlyValGluArgLysLeuProTyrArgValTrpLeuProTyrA : 158 | !!!.! !||| ! !.!.||||||||| !!:!|||!.!|||:!!||||||| rLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrA 1946851 : GCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACG : 1946795 159 : spTyrSerProProThrIlePheTyrProThrTyrIleHisGlnLeuIleGlyMet : 176 ||||||||||| !! !!|||||| !! !|||!:!:!!|||||| !|||!.! ! spTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAlaIleAlaAla 1946794 : ATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCG : 1946741 177 : ThrIleAlaAlaAsnIleAsnIleAlaCysAspSerLeuIleSerGlyLeuLeuGl : 195 ||||||..!..!!.! !:!:!!.!! ||||||||| !!!!||||||||| ThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLeuIl 1946740 : ACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTGAT : 1946684 196 : nGlnIleCysCysGlnIleGluIleLeuGlnTyrArgLeuThrLysVal<->SerH : 213 .!.|||! !||||||.!!|||||||||:!!:!!||||||! !!!.||| !!!. eAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysThrG 1946683 : TAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAACTG : 1946627 214 : isAspGlyHisValLeuAsnAsnCysValArgHisHisAspArgIleTyr{Ly} : 230 !..!.! ! !! !:!!!!..!.|||!.!!:!||||||||||||||||||{:!} luGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIleTyr{Gl}++ 1946626 : AGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTATATAC{CA}gt : 1946574 231 : >>>> Target Intron 1 >>>> {s}TyrAlaGlnThrValAsnMetAsnPh : 239 325 bp {!}!:!:!!:!!! !|||||| .!.|| ++{n}PheSerLysLysValAsnGluGluPh 1946573 : .........................ag{A}TTTTCGAAAAAGGTGAACGAAGAATT : 1946224 240 : eThrLysIleIleAlaLeuGlnPheValValSerMetLeuValValCysAlaAsnL : 258 |! ! !|||:!: !! !|||||| !:!!||||||! !|||:!!||| !|||| eLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIleCysPheAsnL 1946223 : CAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTTCAATC : 1946167 259 : euTyrLysLeuValMetAlaThrIleLeuAlaAspPheIleIleLeuMetLeuTyr : 276 |||||::!:!!..!..! !! !!!: ... |||::: ::::!:|||||| euTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIleIleLeuTyr 1946166 : TTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaatcaTACTCTAC : 1946113 277 : ThrAlaCysMetLeuAlaGlnIlePheLeuTyrCysTrpPheGlyAsnGluLeuLy : 295 :!! !|||! :!!.!!|||||||||! !|||||||||!:!|||||||||:!!|| SerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGluValLy 1946112 : TCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGGCAACGAAGTGAA : 1946056 296 : sLeuLys : 297 | !||| sAspLys 1946055 : AGATAAG : 1946048 vulgar: CbirOr197 120 297 . KQ414661.1 1946906 1946047 - 367 M 91 273 G 0 3 M 18 54 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946048 1946906 367 - . gene_id 1 ; sequence CbirOr197 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1946575 1946906 . - . KQ414661.1 exonerate:protein2genome:local exon 1946575 1946906 . - . insertions 3 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946573 1946574 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946250 1946574 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1946250 1946251 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946048 1946249 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946249 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1946048 1946906 367 - . alignment_id 1 ; Query CbirOr197 ; Align 1946907 121 273 ; Align 1946631 212 54 ; Align 1946249 231 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr197 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 142 Query range: 297 -> 365 Target range: 1948618 -> 1948281 298 : SerLysSerLeuSerAsnSerIleTyrAsnIleThrTrpTyrThrLeuAspAspSe : 316 ||| ..!:!!||||||! !|||!:!:!!:!! !||| !!!!!||| ! :! SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 1948618 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 1948564 317 : rLysLysLysSerLeuLeuLeuIleMetLysArgSerMetIleProIleGluPheA : 335 !! !|||::!!:!:!!||| !!!:|||! !|||:!! ! |||||||||.!!! aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 1948563 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 1948507 336 : snSerValValIleIleThrLeuAsnLeuAspSerPheValSer >>>> Targe : 350 !|||||| !:!::!!:!!:!!||||||||||||||||||:!! leSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 1948506 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.......... : 1948460 351 : t Intron 1 >>>> LeuLeuLysAlaSerTyrSerValPheAsnValLeuLys : 362 133 bp |||||||||.!!|||||||||!.!!:!|||||||||:!! ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGln 1948459 : ...............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAA : 1948293 363 : ArgAlaGln : 365 |||!.!:!! ArgGlyGlu 1948292 : CGCGGCGAA : 1948282 vulgar: CbirOr197 297 365 . KQ414661.1 1948618 1948281 - 142 M 52 156 5 0 2 I 0 129 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948282 1948618 142 - . gene_id 2 ; sequence CbirOr197 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1948463 1948618 . - . KQ414661.1 exonerate:protein2genome:local exon 1948463 1948618 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1948461 1948462 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1948330 1948462 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1948330 1948331 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1948282 1948329 . - . KQ414661.1 exonerate:protein2genome:local exon 1948282 1948329 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948282 1948618 142 - . alignment_id 2 ; Query CbirOr197 ; Align 1948619 298 156 ; Align 1948330 350 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr191 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 437 Query range: 125 -> 370 Target range: 1946909 -> 1945695 126 : LysThrPheTrpTyrThrValLeuAlaGluValThrLeuMetTrpThrAlaLeuAl : 144 !!.|||.!! ! ||| ! ||| :::::: !.!.!::! ! !:!! AsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrValAr 1946909 : AACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATATACGTGAG : 1946855 145 : aSerPheLeuThrAspPheArgSerGlyAsnLeuThrPheArgGluTrpThrProT : 163 !|||.!!|||! !||||||!!!!:! !!!!.|||! !||||||! !|||! !|||| gSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProT 1946854 : ATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCT : 1946798 164 : yrAsnTyrSerGluThr<->MetPheCysValIleTyrValArgGlnLeuIleSer : 180 ||:!!|||||| .!! !!:||| !:!!! !!:!|||!.!||| !|||:!! yrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAlaIleAla 1946797 : ACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCC : 1946744 181 : ThrSerMetGlyAlaMetValAsnIleAlaCysAspSerMetIleCysGlyPheIl : 199 .!!!!!!!: !!..!! !!:!:!!.!! ||||||:!: ! !|||!!.:! AlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLe 1946743 : GCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTT : 1946687 200 : eLeuHisValCysCysGlnPheGluIleLeuGluCysArgLeuLysLysValAlaL : 218 ::!!:!!:!!! !||||||||||||||||||||| !||||||!:!!!.||| ! uIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysT 1946686 : GATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAA : 1946630 219 : euAspGlnLysAsnLeuArgMetGlyAspCysValHisGlnHisAspCysIlePhe : 236 !!!:||| ! :!! !:!! !.!.|||!.!!!.!!.|||||| !!|||!:! hrGluGlnAspAsp---SerValLysGlnCysAlaGlnHisHisAspArgIleTyr 1946629 : CTGAGCAGGATGAC---TCTGTGAAGCAATGTGCTCAACATCACGATCGTATATAC : 1946579 237 : {Ly} >>>> Target Intron 1 >>>> {s}PheAlaPheMetIleAsnGl : 244 {:!} 325 bp {!}|||:!! ! !:!:||||| {Gl}++ ++{n}PheSerLysLysValAsnGl 1946578 : {CA}gt.........................ag{A}TTTTCGAAAAAGGTGAACGA : 1946230 245 : uHisPheLysProIleIleThrIleGlnPheIleValSerMetLeuValValCysS : 263 |.!.||||||! !|||:!:! ! !|||||| !:!!||||||! !|||:!!|||! uGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIleCysP 1946229 : AGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTGCT : 1946173 264 : erAsnLeuTyrGlnLeuAlaLysValThrLeuAsnAlaGluSerLeuThrLeuMet : 281 !|||||||||!:!:!!.!!:!!:!!! !:!!:!:...::: ::: ::::!: heAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIleIle 1946172 : TCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaatcaTA : 1946119 282 : LeuTyrThrThrSerMetLeuThrGlnIleLeuIleTyrCysTrpPheGlyAsnGl : 300 ||||||:!! !!!!! :!!|||||||||!!! !|||||||||!:!|||||||| LeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGl 1946118 : CTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGGCAACGA : 1946062 301 : uValLysIleLys >>>> Target Intron 2 >>>> SerValGlnLeuAl : 309 ||||||| !||| 80 bp |||:!!|||||| ! uValLysAspLys++ ++SerLeuGlnLeuPr 1946061 : AGTGAAAGATAAGgt.........................agAGCCTCCAACTTCC : 1945955 310 : aAlaAsnIlePheGluIleGluTrpLeuLysLeuAspArgSerSerLysLysAspL : 328 ! !! ||||||.!.! !!!:||| !...|||:!!!.!!:! !! !:!! | oTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArgAlaL 1945954 : ATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGAGCAC : 1945898 329 : euLeuIleIleMetAsnArgSerLeuValProIleGluPheSerSerAlaTyrIle : 346 ||||||||!!:|||!..|||:!!:!! !||||||||||||!!!||| !:!!:!! euLeuIleMetMetArgArgAlaValArgProIleGluPheThrSerIleHisVal 1945897 : TTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCACGTT : 1945844 347 : IleThrMetAsnValAspSerPheValSer >>>> Target Intron 3 >>> : 357 :!!:!!:!!|||:!!!!:||||||:!!:!! 74 bp ValSerValAsnLeuGluSerPheMetAla++ 1945843 : GTCTCTGTGAATCTCGAATCCTTCATGGCAgt........................ : 1945809 358 : > LeuLeuLysThrSerTyrSerAlaTyrThrLeuLeuLysGln : 370 :!!:!!||||||||||||||||||!:!!.!:!!:!!:!!||| ++ValIleLysThrSerTyrSerAlaPheAsnMetIleGlnGln 1945808 : .agGTAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAACAA : 1945696 vulgar: CbirOr191 125 370 . KQ414661.1 1946909 1945695 - 437 M 43 129 G 0 3 M 54 162 G 1 0 M 13 39 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 67 201 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945696 1946909 437 - . gene_id 1 ; sequence CbirOr191 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1946575 1946909 . - . KQ414661.1 exonerate:protein2genome:local exon 1946575 1946909 . - . insertions 3 ; deletions 1 KQ414661.1 exonerate:protein2genome:local splice5 1946573 1946574 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946250 1946574 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1946250 1946251 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946048 1946249 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946249 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946046 1946047 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945968 1946047 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1945968 1945969 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945812 1945967 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1945967 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 3 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 3 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 2 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945696 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945696 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945696 1946909 437 - . alignment_id 1 ; Query CbirOr191 ; Align 1946910 126 129 ; Align 1946778 169 162 ; Align 1946616 224 39 ; Align 1946249 238 201 ; Align 1945968 305 156 ; Align 1945738 357 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr191 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 304 -> 372 Target range: 1948618 -> 1948281 305 : SerValGlnLeuAlaAlaAsnIlePheGluIleGluTrpLeuLysLeuAspArgSe : 323 |||:!!:!!:!!:!! !! ||||||.!.:!!!!:||| ! !!!!|||!:!:! SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 1948618 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 1948564 324 : rSerLysLysAspLeuLeuIleIleMetAsnArgSerLeuValProIleGluPheS : 342 !!!!|||::!:!!:!!|||! !!!:|||! |||:!!! ! !|||||||||.!!! aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 1948563 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 1948507 343 : erSerAlaTyrIleIleThrMetAsnValAspSerPheValSer >>>> Targe : 357 !|||!.! !:!::!!:!!:!!|||:!!||||||||||||:!! leSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 1948506 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.......... : 1948460 358 : t Intron 1 >>>> LeuLeuLysThrSerTyrSerAlaTyrThrLeuLeuLys : 369 133 bp |||||||||||||||||||||||||||!.!:!!|||:!! ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGln 1948459 : ...............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAA : 1948293 370 : GlnMetGlu : 372 !:: ||| ArgGlyGlu 1948292 : CGCGGCGAA : 1948282 vulgar: CbirOr191 304 372 . KQ414661.1 1948618 1948281 - 139 M 52 156 5 0 2 I 0 129 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948282 1948618 139 - . gene_id 2 ; sequence CbirOr191 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1948463 1948618 . - . KQ414661.1 exonerate:protein2genome:local exon 1948463 1948618 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1948461 1948462 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1948330 1948462 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1948330 1948331 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1948282 1948329 . - . KQ414661.1 exonerate:protein2genome:local exon 1948282 1948329 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948282 1948618 139 - . alignment_id 2 ; Query CbirOr191 ; Align 1948619 305 156 ; Align 1948330 357 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr194 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 279 Query range: 232 -> 366 Target range: 1946251 -> 1945695 233 : LysPheAlaTyrMetIleAsnGluLysPheArgValIleIleAlaValGlnPheAl : 251 !:!|||:!! ! ! !:!:||||||:!!|||!:!:!!|||:!: ! !||||||.. ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 1946251 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 1946197 252 : aValSerThrLeuValLeuCysSerSerMetPheGlnLeuAlaArgMetSerMetA : 270 !:!!|||! !! !|||:!!|||! !!:!:!:!:!!:!:!!.!!!:!!!:!.!|||: sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetA 1946196 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGG : 1946140 271 : snAlaGluValValProLeuLeuLeuTyrThrIleCysMetCysLeuGlnIleLeu : 288 !:...::: ||| ::::!!||||||:!!.!!|||! ! !||||||!!! spThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePhe 1946139 : AcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTT : 1946086 289 : IleTyrCysTrpTyrGlyAsnGluValLysLeuLys >>>> Target Intron : 301 !||||||||||||||||||||||||||| !||| 80 bp TyrTyrCysTrpTyrGlyAsnGluValLysAspLys++ 1946085 : TACTATTGCTGGTACGGCAACGAAGTGAAAGATAAGgt.................. : 1946045 302 : 1 >>>> SerIleGlnLeuAlaAspAspIlePheGluMetAspTrpIleAlaSe : 316 |||:!!|||||| !! !! ||||||.!.! ||||||! :!!! ++SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSerLe 1946044 : .......agAGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTT : 1945922 317 : rAspLysGlyThrLysGluAsnLeuIleMetIleMetAsnArgSerLeuValProI : 335 !:!!!!...!..!! ..! |||:!!!!:!!:|||!..|||:!!:!! !|||| uAsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgProI 1945921 : GAACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAA : 1945865 336 : leAspIleSerThrAlaHisIleLeuThrValAsnLeuAspSerPheValLys > : 353 ||!!:.!!!!!!:! !|||:!!:!!:!!|||||||||!!:||||||:!! ! leGluPheThrSerIleHisValValSerValAsnLeuGluSerPheMetAla++ 1945864 : TAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt. : 1945809 354 : >>> Target Intron 2 >>>> LeuLeuLysAlaSerTyrSerAlaTyrSer : 362 74 bp :!!:!!|||.!!||||||||||||!:!!:! ++ValIleLysThrSerTyrSerAlaPheAsn 1945808 : ........................agGTAATAAAAACTTCGTACTCCGCGTTCAAC : 1945710 363 : IleLeuGlnGln : 366 !!::!!|||||| MetIleGlnGln 1945709 : ATGATCCAACAA : 1945696 vulgar: CbirOr194 232 366 . KQ414661.1 1946251 1945695 - 279 M 68 204 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945696 1946251 279 - . gene_id 1 ; sequence CbirOr194 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1946048 1946251 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946251 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946046 1946047 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945968 1946047 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1945968 1945969 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945812 1945967 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1945967 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945696 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945696 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945696 1946251 279 - . alignment_id 1 ; Query CbirOr194 ; Align 1946252 233 204 ; Align 1945968 301 156 ; Align 1945738 353 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr194 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 165 Query range: 300 -> 369 Target range: 1948618 -> 1948278 301 : SerIleGlnLeuAlaAspAspIlePheGluMetAspTrpIleAlaSerAspLysGl : 319 |||:!!:!!:!!:!!:!! ||||||.!.:!:||||||! ! !!! !||||||!. SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 1948618 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 1948564 320 : yThrLysGluAsnLeuIleMetIleMetAsnArgSerLeuValProIleAspIleS : 338 !||||||..!|||:!!:!!! !!:|||! |||:!!! ! !||||||!!:|||! aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 1948563 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 1948507 339 : erThrAlaHisIleLeuThrValAsnLeuAspSerPheValLys >>>> Targe : 353 !!:!!.!!.!:!:|||:!!||||||||||||||||||||| leSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 1948506 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.......... : 1948460 354 : t Intron 1 >>>> LeuLeuLysAlaSerTyrSerAlaTyrSerIleLeuGln : 365 133 bp |||||||||.!!|||||||||||||||!:!:!!|||||| ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGln 1948459 : ...............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAA : 1948293 366 : GlnMetGluGly : 369 !:: |||||| ArgGlyGluGly 1948292 : CGCGGCGAAGGC : 1948279 vulgar: CbirOr194 300 369 . KQ414661.1 1948618 1948278 - 165 M 52 156 5 0 2 I 0 129 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948279 1948618 165 - . gene_id 2 ; sequence CbirOr194 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1948463 1948618 . - . KQ414661.1 exonerate:protein2genome:local exon 1948463 1948618 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1948461 1948462 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1948330 1948462 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1948330 1948331 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1948279 1948329 . - . KQ414661.1 exonerate:protein2genome:local exon 1948279 1948329 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948279 1948618 165 - . alignment_id 2 ; Query CbirOr194 ; Align 1948619 301 156 ; Align 1948330 353 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr195PIC Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 512 Query range: 2 -> 275 Target range: 1947373 -> 1946053 3 : LeuLysLeuThrTyrThrIleValMetIleAlaGlyCysPheArgProLeuSerTr : 21 ||||||! !|||! !:!::!!! |||:!!||||||!:!! !|||! !||||| LeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuProHisSerTr 1947373 : CTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTATCTGCCCCATTCGTG : 1947319 22 : pThrSerProPheLysCysThrIleTyrIleIleTyrArgLeuTyrIleIleSerM : 40 ||||!!!||||||:!! ! :!!:!:|||! !|||||| !!:::::: ... : pThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheSerPheLeuL 1947318 : GACAACACCGTTCGAAAGGTCTTTGTACAATATCTACGGGGtgttctcctttcttc : 1947262 41 : etLeuCysThrPheThrMetLeuGlnIleMetAspIleLeuLeuAspIleAspAsn : 58 ::||| !!:!.!!..!:!:! !||||||:!:|||:!! !:!!:!!:!:!!:!:! euLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIleAsnValGluSer 1947261 : ttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCAACGTGGAGAGC : 1947208 59 : AlaAspAspPheThrAsnAsnLeuAsnMetLeuLeuThrThrSerAlaAlaSerTy : 77 !|||||||||!:::::|||...:::::: ! !..!..!! ! !.!!!!!!: GlnAspAspPheSerAspAsnPheSerValThrAlaValValPheLeuThrTrpPh 1947207 : CAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTTCTCACGTGGTT : 1947151 78 : rLysMetPheIleMetTrpIleAsnTyrGluAsnPheAlaThrLeuIleAsnTyrL : 96 !|||:!:! !|||:!: |||... !! !|||||| ! !||||||:!! | eLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuIleAspThrL 1947150 : CAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGATCGATACGC : 1947094 97 : euThr{Un} >>>> Target Intron 1 >>>> {k}AsnAsnThrLeuArg : 103 || !{ } 173 bp { } ||||||:!! !! euGln{Ly}-- ++{s}TrpAsnThrIleGly 1947093 : TTCAG{AA}ca.........................ag{A}TGGAACACGATTGGC : 1946900 104 : TyrThrIleLeuIleGluThrThrCysSerPheIleAlaLeuThrSerLeuPheTh : 122 ||| !! |||::: ::: ! !|||||| !:!!! !||||||!!.! TyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrValArgSerLeuLeuIl 1946899 : TACTGGAGtttactattaatttctacGTTCTTTATATACGTGAGATCGCTTTTGAT : 1946843 123 : rAspPheThrHisArgArgLeuThrTyrArgGluTrpValProTyrAspTyrSerS : 141 !||||||!:!:!!|||!:!|||! !!:!|||! !|||:!!||||||||||||||| eAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrAspTyrSerP 1946842 : AGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACGATTACTCCC : 1946786 142 : erPheMetAlaPheCysPheThrTyrAlaGlnGlnMetValSerThrPheHisCys : 159 !! !||| !.!!|||!:!!.!!!.||| :!!:!!.!! ||| roAlaProIlePheIleLeuThrPheValHisGlnAlaIleAlaAlaThrIleCys 1946785 : CTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCGACGATATGT : 1946732 160 : AlaThrValAsnValAlaCysAspThrLeuLeuCysGlyPheLeuMetHisLeuCy : 178 ..!||| !!:!|||.!! |||:!!|||! ! !|||!!.|||!!::!!:!!! CysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLeuIleAsnIleTy 1946731 : TGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTGATTAATATCTA : 1946675 179 : sCysGlnIleGluValLeuGluTyrArgLeuLysLysLeuSerSerAsnLys<->A : 196 !||||||.!!|||:!!||||||:!!||||||!:!!!.:!!!.!!!!.!.:!! : rCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysThrGluGlnAspA 1946674 : CTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAACTGAGCAGGATG : 1946618 197 : snSerValGlyTyrCysIleArgHisHisAsnArgIlePhe{Gl} >>>> Targ : 210 !!|||||| ! ! ||| !!:!||||||:!!||||||!:!{:!} spSerValLysGlnCysAlaGlnHisHisAspArgIleTyr{Gl}++ 1946617 : ACTCTGTGAAGCAATGTGCTCAACATCACGATCGTATATAC{CA}gt......... : 1946572 211 : et Intron 2 >>>> {u}PheAlaArgLeuValAsnIleArgPheAlaLysIl : 222 325 bp {!}|||:!!!:! !|||||| !..!||| ! !|| ++{n}PheSerLysLysValAsnGluGluPheLysLeuIl 1946571 : ................ag{A}TTTTCGAAAAAGGTGAACGAAGAATTCAAACTGAT : 1946215 223 : eIleGlyTyrGlnPheIleAlaSerMetLeuValIleCysAlaAsnLeuTyrGlnL : 241 |:!: !! !|||||| ! !||||||! !||||||||| !|||||||||!:!: eLeuIleSerGlnPheCysIleSerMetSerValIleCysPheAsnLeuTyrArgM 1946214 : ACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAA : 1946158 242 : euThrLysSerSerLeuSerAlaAsnHisValGlnLeuIleMetTyrThrSerCys : 259 !!|||:!!! !!.!:!!......... |||::::::|||:!:|||:!!! !||| etThrGlnIleLysMetAspThrLysPheValGluIleIleLeuTyrSerPheCys 1946157 : TGACACAGATCAAAATGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGC : 1946104 260 : MetLeuThrGlnIlePheIleTyrCysTrpPheGlyAsnLysValLys : 275 ! :!!|||||||||||| !|||||||||!:!||||||:!!|||||| ThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGluValLys 1946103 : ACTATCACGCAGATATTTTACTATTGCTGGTACGGCAACGAAGTGAAA : 1946054 vulgar: CbirOr195PIC 2 275 . KQ414661.1 1947373 1946053 - 512 M 95 285 S 0 2 5 0 2 I 0 169 3 0 2 S 1 1 M 97 291 G 0 3 M 14 42 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946054 1947373 512 - . gene_id 1 ; sequence CbirOr195PIC ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1947087 1947373 . - . KQ414661.1 exonerate:protein2genome:local exon 1947087 1947373 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1947085 1947086 . - . intron_id 1 ; splice_site "CA" KQ414661.1 exonerate:protein2genome:local intron 1946914 1947086 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1946914 1946915 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946575 1946913 . - . KQ414661.1 exonerate:protein2genome:local exon 1946575 1946913 . - . insertions 3 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946573 1946574 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946250 1946574 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1946250 1946251 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946054 1946249 . - . KQ414661.1 exonerate:protein2genome:local exon 1946054 1946249 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1946054 1947373 512 - . alignment_id 1 ; Query CbirOr195PIC ; Align 1947374 3 285 ; Align 1946913 99 291 ; Align 1946619 196 42 ; Align 1946249 211 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr199 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 655 Query range: 0 -> 369 Target range: 1947382 -> 1945686 1 : MetArgValLeuArgPheThrLeuLeuIleCysAlaPheAlaGlyCysTrpGlnPr : 19 |||!!!||||||!:!! !|||! !|||:!: ! !.!!:!!||||||!::! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 1947382 : ATGAGCGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTATCTGCC : 1947328 20 : oSerSerTrpThrSerLeuLeuLysHisIleIleTyrLysThrTyrAlaMetPheL : 38 | !|||||||||!!!! !!!!:!!... !:!:|||!!.! !|||!.!:::||| oHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheS 1947327 : CCATTCGTGGACAACACCGTTCGAAAGGTCTTTGTACAATATCTACGGGGtgttct : 1947271 39 : euGlySerAlaLeuCysIlePheSerIleSerGlnPheMetAsnIleMetLeuAsn : 56 ||| !! !.!! !:!!||||||.!.:!::!!:!! !:!!||| erPheLeuLeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIleAsn 1947270 : cctttcttcttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCAAC : 1947217 57 : ValGluAsnSerAspGluPheIleAspSerLeuTyrMetMetLeuThrValPheVa : 75 ||||||!:!..!|||!!:|||! |||:::... ::: !..!||||||:! ValGluSerGlnAspAspPheSerAspAsnPheSerValThrAlaValValPheLe 1947216 : GTGGAGAGCCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTTCT : 1947160 76 : lAlaSerTyrLysGlnValTyrMetTrpArgAspArgLysAsnIleMetMetIleI : 94 !.!!!!!!:!|||! ! !:!: ! ! ||| !|||.!!!!:.!.:!:| uThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuI 1947159 : CACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGA : 1947103 95 : leAsnValPheThrPheLysLeuPheAlaProCysGluSerTyrGluValThrIle : 112 ||:!!..!.!! ! !|||! !|||:!!||| !!:!!! ! ||| ! !||| leAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIle 1947102 : TCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATT : 1947049 113 : GlnArgLysPheGluLysIleThr{Ly} >>>> Target Intron 1 >>>> : 121 ::! !||||||||||||||||||{:!} 107 bp ArgAlaLysPheGluLysIleThr{Gl}++ + 1947048 : AGAGCGAAATTCGAGAAGATCACC{GA}gt.........................a : 1946915 122 : {s}AsnAsnThrLeuArgTyrLeuLeuLeuIleValIleAlaIleAlaSerMetI : 139 {!} ||||||:!! !!|||! ! |||::::::|||::: !! !!!: +{u}TrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleT 1946914 : g{A}TGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATAT : 1946861 140 : leMetMetSerValLeuThrGluLeuThrLysArgAsnLeuThrTyrLysAlaTrp : 157 !:!!! |||:!!|||! !!!:!!!!:!!!.|||!!.|||! !!:!::!|||||| yrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrp 1946860 : ACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGG : 1946807 158 : IleProPheAsnTyrSerSerProAlaValTyrPheLeuValTyrIleHisGlnLe : 176 ||||||!:!:!!|||||| !! !! !!:!!!:!.!!|||..!!:!:!!|||||| IleProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAl 1946806 : ATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGC : 1946750 177 : uIleGlyMetAlaThrSerGlyIleValAsnValAlaCysGluSerLeuIlePheG : 195 !|||!.! !.!!! !!!! !!! ! !!:!|||.!! !!:|||||| ! !| aIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrG 1946749 : TATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTG : 1946693 196 : lyLeuLeuLeuGlnIleCysGlyGlnLeuGluIleLeuGluHisArgLeuThrLys : 213 ||||||||:!!.!.|||! ! !!|||!!!|||||||||||||||||||||! !!!. lyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsn 1946692 : GCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAAC : 1946639 214 : Leu<->ValHisAspGluGlyIleIleGlyAspCysIleLeuHisHisAsnLeuIl : 231 :!! ..!.!..!.!!:! ! !:!: !.!.||| !! !||||||:!!! !|| ValLysThrGluGlnAspAspSerValLysGlnCysAlaGlnHisHisAspArgIl 1946638 : GTTAAAACTGAGCAGGATGACTCTGTGAAGCAATGTGCTCAACATCACGATCGTAT : 1946582 232 : ePhe{Gl} >>>> Target Intron 2 >>>> {u}TyrAlaTyrLysValA : 239 |!:!{:!} 325 bp {!}!:!:!! ! ||||||| eTyr{Gl}++ ++{n}PheSerLysLysValA 1946581 : ATAC{CA}gt.........................ag{A}TTTTCGAAAAAGGTGA : 1946233 240 : snAsnMetPheAlaLysIleIleAlaLeuGlnPheAlaValSerMetLeuValVal : 257 ||.!. ||| ! !|||:!: !! !||||||..!:!!||||||! !|||:!! snGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIle 1946232 : ACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATC : 1946179 258 : CysSerAsnLeuTyrArgLeuAlaMetValThrAspTyrValThrPheIleSerLe : 276 |||! !||||||||||||:!!.!!..!:!!! ! ! ... |||:::...:: CysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIl 1946178 : TGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaat : 1946122 277 : uThrThrTyrThrCysAlaIleLeuThrGlnIlePheIleTyrCysTrpPheGlyA : 295 : ! !|||:!!! !..!! !:!!|||||||||||| !|||||||||!:!|||| eIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyA 1946121 : caTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGGCA : 1946065 296 : snGluValLysIleLys >>>> Target Intron 3 >>>> SerLeuHisL : 304 ||||||||||| !||| 80 bp ||||||!!.| snGluValLysAspLys++ ++SerLeuGlnL 1946064 : ACGAAGTGAAAGATAAGgt.........................agAGCCTCCAAC : 1945958 305 : euAlaAsnLysIleTyrAsnMetGluTrpLeuThrLeuSerAsnSerCysLysLys : 322 || !! !!! !|||!:!:!!! !!:||| !:!!|||!:!|||!:! !! !:! euProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValThrArg 1945957 : TTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCACCAGA : 1945904 323 : GlyLeuLeuMetIleMetLysArgAlaThrValProIleGluPheSerSerAlaTy : 341 !.!||||||!!:!!:|||!:!||||||..! !||||||||||||!!!||| !:! AlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheThrSerIleHi 1945903 : GCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTATTCA : 1945847 342 : rValIleThrMetAsnLeuAspSerPheAlaAla >>>> Target Intron 4 : 353 !|||:!!:!!:!!||||||!!:|||||| !||| 74 bp sValValSerValAsnLeuGluSerPheMetAla++ 1945846 : CGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt.................... : 1945809 354 : >>>> LeuLeuLysMetSerTyrSerAlaPheAsnLeuLeuHisGlnThrGlnG : 369 :!!:!!|||! ||||||||||||||||||:!!:!!!!.|||!:!:!!: ++ValIleLysThrSerTyrSerAlaPheAsnMetIleGlnGlnSerLysG 1945808 : .....agGTAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAACAAAGCAAAC : 1945689 370 : lu : 369 !! ln 1945688 : AA : 1945687 vulgar: CbirOr199 0 369 . KQ414661.1 1947382 1945686 - 655 M 120 360 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 93 279 G 0 3 M 18 54 S 0 2 5 0 2 I 0 321 3 0 2 S 1 1 M 67 201 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945687 1947382 655 - . gene_id 1 ; sequence CbirOr199 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1947021 1947382 . - . KQ414661.1 exonerate:protein2genome:local exon 1947021 1947382 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1947019 1947020 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946914 1947020 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1946914 1946915 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946575 1946913 . - . KQ414661.1 exonerate:protein2genome:local exon 1946575 1946913 . - . insertions 3 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946573 1946574 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946250 1946574 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1946250 1946251 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946048 1946249 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946249 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946046 1946047 . - . intron_id 3 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945968 1946047 . - . intron_id 3 KQ414661.1 exonerate:protein2genome:local splice3 1945968 1945969 . - . intron_id 2 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945812 1945967 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1945967 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 4 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 4 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 3 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945687 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945687 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945687 1947382 655 - . alignment_id 1 ; Query CbirOr199 ; Align 1947383 1 360 ; Align 1946913 122 279 ; Align 1946631 215 54 ; Align 1946249 234 201 ; Align 1945968 301 156 ; Align 1945738 353 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr199 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 300 -> 366 Target range: 1948618 -> 1948287 301 : SerLeuHisLeuAlaAsnLysIleTyrAsnMetGluTrpLeuThrLeuSerAsnSe : 319 ||||||.!.:!!:!!|||! !|||!:!:!!:!:!!:||| ! !!!!!..!!!.:! SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 1948618 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 1948564 320 : rCysLysLysGlyLeuLeuMetIleMetLysArgAlaThrValProIleGluPheS : 338 ! |||::!..!:!!|||! !!:|||! !||||||:!! !|||||||||.!!! aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 1948563 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 1948507 339 : erSerAlaTyrValIleThrMetAsnLeuAspSerPheAlaAla >>>> Targe : 353 !|||!.! !|||:!!:!!:!!|||||||||||||||!.!||| leSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 1948506 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.......... : 1948460 354 : t Intron 1 >>>> LeuLeuLysMetSerTyrSerAlaPheAsnLeuLeuHis : 365 133 bp |||||||||! ||||||||||||!:!|||:!!|||!!. ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGln 1948459 : ...............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAA : 1948293 366 : Gln : 366 !:: Arg 1948292 : CGC : 1948288 vulgar: CbirOr199 300 366 . KQ414661.1 1948618 1948287 - 139 M 52 156 5 0 2 I 0 129 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948288 1948618 139 - . gene_id 2 ; sequence CbirOr199 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1948463 1948618 . - . KQ414661.1 exonerate:protein2genome:local exon 1948463 1948618 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1948461 1948462 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1948330 1948462 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1948330 1948331 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1948288 1948329 . - . KQ414661.1 exonerate:protein2genome:local exon 1948288 1948329 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948288 1948618 139 - . alignment_id 2 ; Query CbirOr199 ; Align 1948619 301 156 ; Align 1948330 353 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr208 Target: KQ414667.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold102, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 346 -> 396 Target range: 801764 -> 801463 347 : TyrThrSerGluArgCysArgLysIleLeuLeuLeuIleMetIleArgThrIleLeuP : 366 !::! !.!!...|||! ! !:!!! !|||! !:!!!!:|||!!:|||:!!! :!!| TrpIleGlySerArgPheSerGlnSerLeuGlnIleMetMetMetArgSerArgIleP 801764 : TGGATCGGTAGTCGTTTCTCTCAGAGTCTTCAGATCATGATGATGCGCTCGAGGATAC : 801707 367 : roCysArgIleThrAlaGlyLysLeuValThrLeuSerIleGluSerPheGlyVal : 385 |||||!:!|||||||||!.!|||!!! !!:!:!!|||:!:|||||||||..! ! roCysLysIleThrAlaAlaLysPheTyrSerMetSerLeuGluSerPheSerLys++ 801706 : CATGCAAGATAACCGCCGCTAAATTCTACAGCATGTCCTTGGAGAGCTTCTCGAAGgt : 801650 386 : >>>> Target Intron 1 >>>> ValLeuLysThrSerIleSerTyrPheMetV : 395 151 bp ||||||!..||||||.!!|||||||||! !| ++ValLeuSerThrSerPheSerTyrPheThrV 801649 : .........................agGTACTCAGCACGTCTTTCTCCTACTTCACGG : 801469 396 : alLeu : 396 ||||| alLeu 801468 : TCCTC : 801464 vulgar: CbirOr208 346 396 . KQ414667.1 801764 801463 - 107 M 38 114 5 0 2 I 0 147 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414667.1 exonerate:protein2genome:local gene 801464 801764 107 - . gene_id 1 ; sequence CbirOr208 ; gene_orientation + KQ414667.1 exonerate:protein2genome:local cds 801651 801764 . - . KQ414667.1 exonerate:protein2genome:local exon 801651 801764 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 801649 801650 . - . intron_id 1 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801500 801650 . - . intron_id 1 KQ414667.1 exonerate:protein2genome:local splice3 801500 801501 . - . intron_id 0 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801464 801499 . - . KQ414667.1 exonerate:protein2genome:local exon 801464 801499 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local similarity 801464 801764 107 - . alignment_id 1 ; Query CbirOr208 ; Align 801765 347 114 ; Align 801500 385 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr205 Target: KQ414667.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold102, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 356 -> 397 Target range: 801737 -> 801463 357 : LeuLeuLeuIleMetAsnArgThrValTyrProCysLysIleThrAlaGlyLysIleL : 376 |||! !:!!!!:|||! |||:!! ! ||||||||||||||||||!.!|||.!!! LeuGlnIleMetMetMetArgSerArgIleProCysLysIleThrAlaAlaLysPheT 801737 : CTTCAGATCATGATGATGCGCTCGAGGATACCATGCAAGATAACCGCCGCTAAATTCT : 801680 377 : euIleLeuSerIleGluSerPheGlyThr >>>> Target Intron 1 >>>> : 386 !! !:!!|||:!:|||||||||..!! ! 151 bp yrSerMetSerLeuGluSerPheSerLys++ ++ 801679 : ACAGCATGTCCTTGGAGAGCTTCTCGAAGgt.........................ag : 801501 387 : ValLeuLysThrSerMetSerTyrLeuThrValLeu : 397 ||||||!..||||||.!.||||||!!!||||||||| ValLeuSerThrSerPheSerTyrPheThrValLeu 801500 : GTACTCAGCACGTCTTTCTCCTACTTCACGGTCCTC : 801464 vulgar: CbirOr205 356 397 . KQ414667.1 801737 801463 - 100 M 29 87 5 0 2 I 0 147 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414667.1 exonerate:protein2genome:local gene 801464 801737 100 - . gene_id 1 ; sequence CbirOr205 ; gene_orientation + KQ414667.1 exonerate:protein2genome:local cds 801651 801737 . - . KQ414667.1 exonerate:protein2genome:local exon 801651 801737 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 801649 801650 . - . intron_id 1 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801500 801650 . - . intron_id 1 KQ414667.1 exonerate:protein2genome:local splice3 801500 801501 . - . intron_id 0 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801464 801499 . - . KQ414667.1 exonerate:protein2genome:local exon 801464 801499 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local similarity 801464 801737 100 - . alignment_id 1 ; Query CbirOr205 ; Align 801738 357 87 ; Align 801500 386 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr206 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 346 -> 401 Target range: 1395359 -> 1395911 347 : TrpTyrTyrThrSerLysArgCysGlnLysLeuLeuLeuLeuIleMetAsnArgTh : 365 |||||| ! !..! !:! !::! ! :!!:!!:!!|||:!!|||! |||:! TrpTyrLeuLeuAspProGlnAspArgHisIleIleIleLeuLeuMetIleArgSe 1395360 : TGGTACCTTCTGGATCCTCAAGACAGACATATCATTATTCTTCTCATGATAAGATC : 1395414 366 : rMetLysProCysLysIleThrAlaGlyLysIleMetIleLeuSerIleGluSerP : 384 !...!:!! !! ! !|||||||||||||||.!!||| !||||||:!!|||.!!| rGlnArgArgLeuThrIleThrAlaGlyLysPheMetAspLeuSerLeuGluGlyP 1395415 : TCAAAGACGATTAACAATCACCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTT : 1395471 385 : heAlaAla >>>> Target Intron 1 >>>> ValValLysAlaSerValS : 393 ||||| ! 387 bp ::::!!|||||||||!.!| heAlaAsn++ ++IleLeuLysAlaSerAlaS 1395472 : TTGCAAATgt.........................agatcTTAAAGGCTTCTGCAT : 1395885 394 : erTyrLeuThrIlePheArgSerLeu : 401 |||||:!!:!!:!!.!. !:!!:!! erTyrIleSerValLeuTyrAlaMet 1395886 : CGTACATATCTGTACTGTATGCGATG : 1395911 vulgar: CbirOr206 346 401 . KQ414716.1 1395359 1395911 + 100 M 40 120 5 0 2 I 0 383 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395360 1395911 100 + . gene_id 1 ; sequence CbirOr206 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1395360 1395479 . + . KQ414716.1 exonerate:protein2genome:local exon 1395360 1395479 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1395480 1395481 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1395480 1395866 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1395865 1395866 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1395867 1395911 . + . KQ414716.1 exonerate:protein2genome:local exon 1395867 1395911 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395360 1395911 100 + . alignment_id 1 ; Query CbirOr206 ; Align 1395360 347 120 ; Align 1395867 387 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr209 Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 153 -> 213 Target range: 887588 -> 887768 154 : AsnGlyThrArgProArgLysMetProHisProAlaGluTyrPheIleAsnGlnGluL : 173 ||| !!|||..!||||||:!!! ! !:!!|||!.!|||||| !|||:::...|||| AsnArgThrGluProArgGlnThrLeuTyrProValGluTyrHisIleAspSerGluL 887589 : AACCGGACCGAACCCAGACAGACTCTATACCCAGTGGAGTACCACATCgacagtgaaa : 887646 174 : ysTyrTyrTyrValLeuLeuLeuAsnThrTyrValGlyTyrValAlaCysValSerIl : 192 |||||:::|||::::!! ! !:!! !|||!.!..! ||| ! !:!! ! ysTyrPheTyrLeuIleThrAlaHisCysTyrAlaSerThrValLeuLeuLeuLeuGl 887647 : aatatttttacctgATTACAGCTCATTGTTACGCCTCGACAGTACTTCTTCTGCTTCA : 887703 193 : eAlaValAlaAlaAspThrMetTyrValLeuLeuValGluHisIleCysGlyMetTyr : 211 !.!!|||!.! !||||||||||||:!!:!!||||||:!!||| !|||!.!:!:!:! nThrValValHisAspThrMetTyrIleValLeuValGlnHisGlyCysAlaLeuPhe 887704 : AACTGTCGTACACGACACAATGTACATTGTTCTGGTCCAACATGGCTGCGCTTTATTC : 887760 212 : GlyVal : 213 !.!||| AlaVal 887761 : GCAGTT : 887768 vulgar: CbirOr209 153 213 . KQ414735.1 887588 887768 + 135 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 887589 887768 135 + . gene_id 1 ; sequence CbirOr209 ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 887589 887768 . + . KQ414735.1 exonerate:protein2genome:local exon 887589 887768 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 887589 887768 135 + . alignment_id 1 ; Query CbirOr209 ; Align 887589 154 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr209 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 145 -> 213 Target range: 37979 -> 37775 146 : ValLeuAspIleIleSerProLeuAsnGlyThrArgProArgLysMetProHisProAla : 165 |||||||||:!!||||||||| !|||! !:!!||| ! ! ! .!. !:!!|||||| ValLeuAspLeuIleSerProLysAsnGluSerArgGlyValAspPheIleTyrProAla 37979 : GTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTCATTTATCCTGCA : 37922 166 : GluTyrPheIleAsnGlnGluLysTyrTyrTyrValLeuLeuLeuAsnThrTyrValGly : 185 ! ||| !:!!:!!:!!|||:!!:!!||||||:!!|||:!! !:!!! ! ! !! ! TyrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHisMetLeuCysVal 37921 : TACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCACATGCTCTGCGTG : 37862 186 : TyrValAlaCysValSerIleAlaValAlaAlaAspThrMetTyrValLeuLeuValGlu : 205 ..!!.! !!! !:!: !:!!:!!..!||||||!!:|||:!! !:!!|||:!! IleThrValValPhePheValTyrIleSerCysAspThrIleTyrMetSerIleValGln 37861 : ATAACTGTAGTGTTTTTCGTGTACATCTCCTGTGACACGATCTACATGAGCATCGTTCAA : 37802 206 : HisIleCysGlyMetTyrGlyVal : 213 ||| ||||||:!: ..!||| HisAlaCysGlyLeuLeuAsnVal 37801 : CACGCGTGCGGATTACTGAACGTC : 37776 vulgar: CbirOr209 145 213 . KQ414772.1 37979 37775 - 125 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37776 37979 125 - . gene_id 1 ; sequence CbirOr209 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37776 37979 . - . KQ414772.1 exonerate:protein2genome:local exon 37776 37979 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 37776 37979 125 - . alignment_id 1 ; Query CbirOr209 ; Align 37980 146 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr209 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 112 -> 210 Target range: 33721 -> 33427 113 : ThrArgTyrSerGluAsnGlyArgLysPheThrLeuAlaTyrSerIleCysIleIleGly : 132 |||||||||! ! !.. ...|||::: :::::: ! ! !:!: ! ThrArgTyrTyrCysThrValTyrSerPheSerSerAsnPheThrAlaAsnGlyValPhe 33721 : ACCCGATATTATTGTActgtttattcattttcttcaaatttcacagCAAACGGAGTGTTT : 33664 133 : PheValPheCysTyrAlaLeuLeuProLeuAlaGlyProValLeuAspIleIleSerPro : 152 ! ! !.!! !:!::!! ! !|||!!! ! !! ! !!:!!|||:!! ! ! !! CysTyrIleMetPheSerSerAlaProPheIleProHisPheIleAspValAlaLeuSer 33663 : TGCTACATCATGTTCAGCTCGGCGCCTTTTATACCGCATTTTATCGATGTTGCGTTGTCG : 33604 153 : LeuAsnGlyThrArgProArgLysMetProHisProAlaGluTyrPheIleAsnGlnGlu : 172 !|||! !:!!||| ! !!..:!! !:!!|||||| ! ||| !|||:!!|||!:: LysAsnGluSerArgLysLeuSerLeuMetTyrProAlaTyrTyrGlyIleAspGlnAsp 33603 : AAAAACGAGTCACGAAAATTAAGTTTGATGTACCCTGCCTATTACGGCATTGACCAGGac : 33544 173 : LysTyrTyrTyrValLeuLeuLeuAsnThrTyrValGlyTyrValAlaCysValSerIle : 192 |||||||||||| |||::: !:!!! ! !!.! !.!||| !!! !:!! LysTyrTyrTyrTyrLeuMetAlaHisMetMetSerAlaGlyAlaAlaValPhePheVal 33543 : aagtattattattatctaatgGCTCACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTA : 33484 193 : AlaValAlaAlaAspThrMetTyrValLeuLeuValGluHisIleCysGlyMet : 210 !:!!:!!..!||||||!!:|||:!! !:!!|||:!!||| ||||||:!! PheMetSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeu 33483 : TTTATGTCCTGCGACACGATTTATATGAATATCGTTCAACACGCGTGCGGATTG : 33428 vulgar: CbirOr209 112 210 . KQ414772.1 33721 33427 - 118 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33428 33721 118 - . gene_id 2 ; sequence CbirOr209 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33428 33721 . - . KQ414772.1 exonerate:protein2genome:local exon 33428 33721 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 33428 33721 118 - . alignment_id 2 ; Query CbirOr209 ; Align 33722 113 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr209 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 136 -> 210 Target range: 24413 -> 24191 137 : TyrAlaLeuLeuProLeuAlaGlyProValLeuAspIleIleSerProLeuAsnGlyThr : 156 !:!.!! !:!! !!:!!.!! !! !|||||||||:!!||||||||| !|||! !:!! PheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSer 24413 : TTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCG : 24356 157 : ArgProArgLysMetProHisProAlaGluTyrPheIleAsnGlnGluLysTyrTyrTyr : 176 ||| ! ! .!. !:!!||||||.!.||| !:!!:!!:!!|||:!!:!!|||||| ArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyrTyr 24355 : CGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTACTAC : 24296 177 : ValLeuLeuLeuAsnThrTyrValGlyTyrValAlaCysValSerIleAlaValAlaAla : 196 !|||:!! !:!!! ! ! !! ! ..!!.! !!! !:!! !:!!:!!..! TyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIleSerCys 24295 : TATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGT : 24236 197 : AspThrMetTyrValLeuLeuValGluHisIleCysGlyMet : 210 ||||||!!:|||:!! !:!!|||:!!||| ||||||:!: AspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeu 24235 : GACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTA : 24192 vulgar: CbirOr209 136 210 . KQ414772.1 24413 24191 - 118 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24192 24413 118 - . gene_id 3 ; sequence CbirOr209 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24192 24413 . - . KQ414772.1 exonerate:protein2genome:local exon 24192 24413 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 24192 24413 118 - . alignment_id 3 ; Query CbirOr209 ; Align 24414 137 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr209 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 145 -> 213 Target range: 29565 -> 29361 146 : ValLeuAspIleIleSerProLeuAsnGlyThrArgProArgLysMetProHisProAla : 165 |||||||||:!!||||||||| !|||! !:!!||| ! ! .!. !:!!|||||| ValLeuAspLeuIleSerProLysAsnGluSerArgGlyValGlyPheIleTyrProAla 29565 : GTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTGGGCTTCATTTATCCTGCA : 29508 166 : GluTyrPheIleAsnGlnGluLysTyrTyrTyrValLeuLeuLeuAsnThrTyrValGly : 185 ! ||| !:!!:!!:!!|||:!!:!!|||||| !|||:!! !:!!! ! ! !! ! TyrTyrGlyLeuAspGluGluGluHisTyrTyrTyrLeuMetGlyHisMetLeuSerVal 29507 : TACTACGGTCTTGACGAAGAGGAGCATTACTACTATCTGATGGGTCACATGCTTTCCGTG : 29448 186 : TyrValAlaCysValSerIleAlaValAlaAlaAspThrMetTyrValLeuLeuValGlu : 205 ..!!.! !!! !:!! !:!!:!!..!||||||!!:|||:!! !:!!|||:!! IleThrValValPhePheValTyrIleSerCysAspThrIleTyrMetAsnValValGln 29447 : ATAACCGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATCTATATGAATGTCGTGCAA : 29388 206 : HisIleCysGlyMetTyrGlyVal : 213 ||| ||||||:!:! ..!||| HisAlaCysGlyLeuLeuAsnVal 29387 : CACGCGTGTGGATTATTGAACGTC : 29362 vulgar: CbirOr209 145 213 . KQ414772.1 29565 29361 - 117 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29362 29565 117 - . gene_id 4 ; sequence CbirOr209 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29362 29565 . - . KQ414772.1 exonerate:protein2genome:local exon 29362 29565 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 29362 29565 117 - . alignment_id 4 ; Query CbirOr209 ; Align 29566 146 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr209 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 134 -> 213 Target range: 18045 -> 17808 135 : PheCysTyrAlaLeuLeuProLeuAlaGlyProValLeuAspIleIleSerProLeuAsn : 154 |||! !:! !! !:!!|||! !:!! !! !:!!:!!:!! !!.! !!! !||| PheLeuPheIleGlnValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsn 18045 : TTCTTGTTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAAT : 17988 155 : GlyThrArgProArgLysMetProHisProAlaGluTyrPheIleAsnGlnGluLysTyr : 174 !|||! ! ! !:!!.!. ! |||!.! ! ||||||:!!:!!:!!! !:!!||| IleThrProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGluValGluTyr 17987 : ATAACGCCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATAC : 17928 175 : TyrTyrValLeuLeuLeuAsnThrTyrValGlyTyrValAlaCysValSerIleAlaVal : 194 |||||| !:!!:!!|||:!! ! ! ! !:!! ! ||| !:!: ! ! TyrTyrTyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyrCys 17927 : TATTATTACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGT : 17868 195 : AlaAlaAspThrMetTyrValLeuLeuValGluHisIleCysGlyMetTyrGlyVal : 213 |||..!||||||! |||:!!:!!||||||:!!|||! !||||||:!!!:!!.!||| AlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaVal 17867 : GCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTG : 17809 vulgar: CbirOr209 134 213 . KQ414772.1 18045 17808 - 112 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17809 18045 112 - . gene_id 5 ; sequence CbirOr209 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17809 18045 . - . KQ414772.1 exonerate:protein2genome:local exon 17809 18045 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17809 18045 112 - . alignment_id 5 ; Query CbirOr209 ; Align 18046 135 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr209 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 140 -> 210 Target range: 42697 -> 42487 141 : ProLeuAlaGlyProValLeuAspIleIleSerProLeuAsnGlyThrArgProArgLys : 160 |||! ! ! !! !|||! !|||:!!!!:! ! !! !|||! !:!!||| ! ! ProTyrIleProHisValTyrAspValMetLeuSerLysAsnGluSerArgLysLeuGly 42697 : CCTTATATACCGCATGTATATGATGTTATGTTATCGAAAAACGAGTCACGAAAGTTGGGT : 42640 161 : MetProHisProAlaGluTyrPheIleAsnGlnGluLysTyrTyrTyrValLeuLeuLeu : 180 .!. !:!!|||||| ! ||| !:!!:!!|||!!:|||||||||||| !:!!:!! ! PheIleTyrProAlaTyrTyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAla 42639 : TTCATTTACCCTGCCTATTATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCT : 42580 181 : AsnThrTyrValGlyTyrValAlaCysValSerIleAlaValAlaAlaAspThrMetTyr : 200 :!!! ! !||| !:!!!.! !!! !! ! !:!!:!!..!||||||!!:||| HisMetThrSerGlyGlyLeuValValPhePheThrPheIleSerCysAspThrIleTyr 42579 : CACATGACATCTGGGGGCTTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTAC : 42520 201 : ValLeuLeuValGluHisIleCysGlyMet : 210 :!! !:!!|||:!!||| ||||||:!! MetAsnIleValGlnHisAlaCysGlyLeu 42519 : ATGAATATCGTGCAACACGCGTGCGGATTG : 42488 vulgar: CbirOr209 140 210 . KQ414772.1 42697 42487 - 111 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42488 42697 111 - . gene_id 6 ; sequence CbirOr209 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42488 42697 . - . KQ414772.1 exonerate:protein2genome:local exon 42488 42697 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42488 42697 111 - . alignment_id 6 ; Query CbirOr209 ; Align 42698 141 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr209 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 126 -> 204 Target range: 45970 -> 45736 127 : SerIleCysIleIleGlyPheValPheCysTyrAlaLeuLeuProLeuAlaGlyProVal : 146 |||:!! !||| ! ! |||! ! !:!:!! ! !|||||| ! ! !:!! SerValThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIle 45970 : TCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATC : 45913 147 : LeuAspIleIleSerProLeuAsnGlyThrArgProArgLysMetProHisProAlaGlu : 166 ||||||:!!|||||||||||||||! !:!!||||||||| ! !!:!! !||| ! LeuAspLeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyr 45912 : CTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTAC : 45853 167 : TyrPheIleAsnGlnGluLysTyrTyrTyrValLeuLeuLeuAsnThrTyrValGlyTyr : 186 ! !!:!.!!|||! !!!: ! ||||||||| !:!!:!! ! !!||| !!.! !! CysTyrPheAsnProAspAspTyrTyrTyrTyrValValGlyTyrThrSerAlaCysIle 45852 : TGTTACTTCAATCCGGACGACTACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATA : 45793 187 : ValAlaCysValSerIleAlaValAlaAlaAspThrMetTyrValLeuLeuVal : 204 ! ! !..!! ! !:!: !|||!.!||||||! !!!: :!!! !|||||| GlyMetAlaGlyLeuValLeuValGlyAlaAspIleIleMetIleHisLeuVal 45792 : GGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATTATGATACATCTTGTA : 45737 vulgar: CbirOr209 126 204 . KQ414772.1 45970 45736 - 100 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45737 45970 100 - . gene_id 7 ; sequence CbirOr209 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45737 45970 . - . KQ414772.1 exonerate:protein2genome:local exon 45737 45970 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45737 45970 100 - . alignment_id 7 ; Query CbirOr209 ; Align 45971 127 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr203 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 123 -> 215 Target range: 38045 -> 37769 124 : LeuLeuPheThrLeuGlnMetTrpIleIleValValValTyrIleValTrpIlePheThr : 143 |||! !||||||:!!.!. !.!! ! !|||:!!!:!! ! ! ! .!!||| LeuTyrPheThrValAsnGlyLeuPheCysTyrValIlePheThrSerValAlaIleThr 38045 : CTGTATTTCACAGTAAACGGACTGTTTTGCTACGTTATATTCACCTCAGTGGCGATTACG : 37988 144 : ProGluIleLeuAspValIleSerProLeuAsnGluSerArgProArgIleGluSerPhe : 163 |||...:!!||||||:!!||||||||| !|||||||||||| ! ! ! ! !!:! ProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValAspPheIleTyr 37987 : CCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTCATTTAT : 37928 164 : LysLeuGluPhePheIleAspLysAspArgTyrIleTyrPheThrArgPheTyrIleCys : 183 ! ! !:! !:!!|||:!!!!:..!:!! !|||.!! !! ! !:!!!!: ! ProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHisMetLeu 37927 : CCTGCATACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCACATGCTC : 37868 184 : PheValAlaIleIleIleIleThrIlePheLeuSerAsnPheSerIleValLeuThrPhe : 203 ! !||| !! !:!!:!:.!! !:!:!:!:!!||| ! !!!!||| !:!!!:!.!! CysValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMetSerIle 37867 : TGCGTGATAACTGTAGTGTTTTTCGTGTACATCTCCTGTGACACGATCTACATGAGCATC : 37808 204 : ThrGlnHisValCysGlyMetCysLysLeuLeuGly : 215 ..!||||||!.!||||||:!: !!.:!!! !||| ValGlnHisAlaCysGlyLeuLeuAsnValSerGly 37807 : GTTCAACACGCGTGCGGATTACTGAACGTCTCTGGG : 37770 vulgar: CbirOr203 123 215 . KQ414772.1 38045 37769 - 123 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37770 38045 123 - . gene_id 1 ; sequence CbirOr203 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37770 38045 . - . KQ414772.1 exonerate:protein2genome:local exon 37770 38045 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 37770 38045 123 - . alignment_id 1 ; Query CbirOr203 ; Align 38046 124 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr203 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 134 -> 215 Target range: 24419 -> 24176 135 : ValValTyrIleValTrpIlePheThrProGluIleLeuAspValIleSerProLeuAsn : 154 |||:!!!:!! !!.! ! .!!||||||...:!!||||||:!!||||||||| !||| ValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 24419 : GTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAAC : 24362 155 : GluSerArgProArgIleGluSerPheLysLeuGluPhePheIleAspLysAspArgTyr : 174 ||||||||| ! ! ! ! !!:! !.!.!:! !:!!|||:!!!!:..!:!! GluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHis 24361 : GAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCAT : 24302 175 : IleTyrPheThrArgPheTyrIleCysPheValAlaIleIleIleIleThrIlePheLeu : 194 !|||!:! !! ! !:!!!!: !! !||| !! !:!!:!:.!! !:!!!:!:!! TyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIle 24301 : TACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATC : 24242 195 : SerAsnPheSerIleValLeuThrPheThrGlnHisValCysGlyMetCysLysLeuLeu : 214 ||| ! !!!!||| !:!!!.!.!!..!||||||!.!||||||:!:! !!.|||! ! SerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSer 24241 : TCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCT : 24182 215 : Gly : 215 ||| Gly 24181 : GGG : 24177 vulgar: CbirOr203 134 215 . KQ414772.1 24419 24176 - 122 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24177 24419 122 - . gene_id 2 ; sequence CbirOr203 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24177 24419 . - . KQ414772.1 exonerate:protein2genome:local exon 24177 24419 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 24177 24419 122 - . alignment_id 2 ; Query CbirOr203 ; Align 24420 135 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr203 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 125 -> 215 Target range: 29625 -> 29355 126 : PheThrLeuGlnMetTrpIleIleValValValTyrIleValTrpIlePheThrProGlu : 145 |||||| !.!. .!! ! !|||:!!!:!! ! ! ! .!.||||||... PheThrAlaAsnGlyIlePheCysTyrValIlePheThrSerValAlaIleThrProArg 29625 : tTCACAGCAAATGGAATCTTCTGCTACGTTATATTCACCTCAGTGGCGATAACCCCTCGT : 29568 146 : IleLeuAspValIleSerProLeuAsnGluSerArgProArgIleGluSerPheLysLeu : 165 :!!||||||:!!||||||||| !|||||||||||| ! ! ! ! !!:! ! ValLeuAspLeuIleSerProLysAsnGluSerArgGlyValGlyPheIleTyrProAla 29567 : GTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTGGGCTTCATTTATCCTGCA : 29508 166 : GluPhePheIleAspLysAspArgTyrIleTyrPheThrArgPheTyrIleCysPheVal : 185 ! !:! !:!!|||:!!!!:..!:!! !|||!:! !! ! !:!!!!: !! !||| TyrTyrGlyLeuAspGluGluGluHisTyrTyrTyrLeuMetGlyHisMetLeuSerVal 29507 : TACTACGGTCTTGACGAAGAGGAGCATTACTACTATCTGATGGGTCACATGCTTTCCGTG : 29448 186 : AlaIleIleIleIleThrIlePheLeuSerAsnPheSerIleValLeuThrPheThrGln : 205 !! !:!!:!:.!! !:!!!:!:!!||| ! !!!!||| !:!!!.! !!..!||| IleThrValValPhePheValTyrIleSerCysAspThrIleTyrMetAsnValValGln 29447 : ATAACCGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATCTATATGAATGTCGTGCAA : 29388 206 : HisValCysGlyMetCysLysLeuLeuGly : 215 |||!.!||||||:!:! !!.:!!! !||| HisAlaCysGlyLeuLeuAsnValSerGly 29387 : CACGCGTGTGGATTATTGAACGTCTCTGGG : 29356 vulgar: CbirOr203 125 215 . KQ414772.1 29625 29355 - 117 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29356 29625 117 - . gene_id 3 ; sequence CbirOr203 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29356 29625 . - . KQ414772.1 exonerate:protein2genome:local exon 29356 29625 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 29356 29625 117 - . alignment_id 3 ; Query CbirOr203 ; Align 29626 126 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr203 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 126 -> 181 Target range: 45970 -> 45805 127 : ThrLeuGlnMetTrpIleIleValValValTyrIleValTrpIlePheThrProGluIle : 146 :!!:!! !!:!::||| !||| !|||!:! !..! ! !.!!! !||| ||| SerValThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIle 45970 : TCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATC : 45913 147 : LeuAspValIleSerProLeuAsnGluSerArgProArgIleGluSerPheLysLeuGlu : 166 ||||||:!!||||||||||||||||||||||||||||||:!: ! :!!!:!||| ! ! LeuAspLeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyr 45912 : CTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTAC : 45853 167 : PhePheIleAspLysAspArgTyrIleTyrPheThrArgPheTyr : 181 ! !!:!.!!:!! !||| !||| !|||!:!..! ! ||| CysTyrPheAsnProAspAspTyrTyrTyrTyrValValGlyTyr 45852 : TGTTACTTCAATCCGGACGACTACTATTATTACGTCGTGGGGTAC : 45806 vulgar: CbirOr203 126 181 . KQ414772.1 45970 45805 - 102 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45806 45970 102 - . gene_id 4 ; sequence CbirOr203 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45806 45970 . - . KQ414772.1 exonerate:protein2genome:local exon 45806 45970 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45806 45970 102 - . alignment_id 4 ; Query CbirOr203 ; Align 45971 127 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr209 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 324 -> 377 Target range: 1345564 -> 1345723 325 : SerThrGlyIleSerIleAlaAlaTyrAsnGlyThrTrpTyrAsnAlaProThrGl : 343 |||:!!! !!!:..! |||..!||| !.!!!.!||||||:!! !||| !:! SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 344 : uValGlnLysLeuLeuIleLeuLeuIleAlaArgSerGlnLysAlaSerArgIleT : 362 ! ! !::!! !||||||!!!! !|||||||||||||||||| !!||| !:!!| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 363 : hrIleAlaLysLeuTyrValIleAsnLeuGluGlyPheSerMetVal : 377 || !!.!|||!!!||||||.!!:::|||||| !|||.!!!!:||| hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIleVal 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCGTG : 1345723 vulgar: CbirOr209 324 377 . KQ414782.1 1345564 1345723 + 108 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345723 108 + . gene_id 1 ; sequence CbirOr209 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345723 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345723 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345723 108 + . alignment_id 1 ; Query CbirOr209 ; Align 1345565 325 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr203 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 133 Query range: 126 -> 215 Target range: 26255 -> 25988 127 : ThrLeuGlnMetTrpIleIleValValValTyrIleValTrpIlePheThrProGluIle : 146 |||:!!!!.!!:! !:!! !!.!!.!:!!!:!!!: !! ! |||..! !! !||| ThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIle 26255 : ACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATT : 26198 147 : LeuAspValIleSerProLeuAsnGluSerArgProArgIleGluSerPheLysLeuGlu : 166 ||||||:!!:!!! !||||||||||||!!!||| !!|||:!: !!:! ! ! ! LeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyr 26197 : CTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTAC : 26138 167 : PhePheIleAspLysAspArgTyrIleTyrPheThrArgPheTyrIleCysPheValAla : 186 !:!|||:!!|||:!!|||!:!||| !|||!!.! ! ! :!!!!:! !.!!|||!.! TyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValVal 26137 : TATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTG : 26078 187 : IleIleIleIleThrIlePheLeuSerAsnPheSerIleValLeuThrPheThrGlnHis : 206 :!!!!::!!|||:!!:!!|||! !:!! ! !:!!! ! !:!! ! !..!|||||| ValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHis 26077 : GTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACAC : 26018 207 : ValCysGlyMetCysLysLeuLeuGly : 215 !.!||||||:!!! :!! !||| AlaCysGlyLeuLeuAlaIleAlaGly 26017 : GCTTGCGGATTGTTGGCCATTGCAGGG : 25989 vulgar: CbirOr203 126 215 . LHQN01017803.1 26255 25988 - 133 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26255 133 - . gene_id 1 ; sequence CbirOr203 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26255 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26255 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26255 133 - . alignment_id 1 ; Query CbirOr203 ; Align 26256 127 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr203 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 134 -> 215 Target range: 29613 -> 29370 135 : ValValTyrIleValTrpIlePheThrProGluIleLeuAspValIleSerProLeuAsn : 154 |||:!!!:!! !!.! ! .!!||||||...:!!||||||:!!||||||||| !||| ValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 29613 : GTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAAC : 29556 155 : GluSerArgProArgIleGluSerPheLysLeuGluPhePheIleAspLysAspArgTyr : 174 ||||||||| ! ! ! ! !!:! !.!.!:! !:!!|||:!!!!:..!:!! GluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHis 29555 : GAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCAT : 29496 175 : IleTyrPheThrArgPheTyrIleCysPheValAlaIleIleIleIleThrIlePheLeu : 194 !|||!:! !! ! !:!!!!: !! !||| !! !:!!:!:.!! !:!!!:!:!! TyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIle 29495 : TACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATC : 29436 195 : SerAsnPheSerIleValLeuThrPheThrGlnHisValCysGlyMetCysLysLeuLeu : 214 ||| ! !!!!||| !:!!!.!.!!..!||||||!.!||||||:!:! !!.|||! ! SerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSer 29435 : TCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCT : 29376 215 : Gly : 215 ||| Gly 29375 : GGG : 29371 vulgar: CbirOr203 134 215 . LHQN01017803.1 29613 29370 - 122 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29371 29613 122 - . gene_id 2 ; sequence CbirOr203 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29371 29613 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29371 29613 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 29371 29613 122 - . alignment_id 2 ; Query CbirOr203 ; Align 29614 135 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr203 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 126 -> 181 Target range: 33717 -> 33552 127 : ThrLeuGlnMetTrpIleIleValValValTyrIleValTrpIlePheThrProGluIle : 146 :!!:!! !!:!::||| !||| !|||!:! !..! ! !.!!! !||| ||| SerValThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIle 33717 : TCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATC : 33660 147 : LeuAspValIleSerProLeuAsnGluSerArgProArgIleGluSerPheLysLeuGlu : 166 ||||||:!!||||||||||||||||||||||||||||||:!: ! :!!!:!||| ! ! LeuAspLeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyr 33659 : CTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTAC : 33600 167 : PhePheIleAspLysAspArgTyrIleTyrPheThrArgPheTyr : 181 ! !!:!.!!:!! !||| !||| !|||!:!..! ! ||| CysTyrPheAsnProAspAspTyrTyrTyrTyrValValGlyTyr 33599 : TGTTACTTCAATCCGGACGACTACTATTATTACGTCGTGGGGTAC : 33553 vulgar: CbirOr203 126 181 . LHQN01017803.1 33717 33552 - 102 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33553 33717 102 - . gene_id 3 ; sequence CbirOr203 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33553 33717 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33553 33717 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33553 33717 102 - . alignment_id 3 ; Query CbirOr203 ; Align 33718 127 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr209 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 177 Query range: 136 -> 213 Target range: 26225 -> 25994 137 : TyrAlaLeuLeuProLeuAlaGlyProValLeuAspIleIleSerProLeuAsnGlyThr : 156 !:! !! !||||||!!!!.!..!|||:!!|||||||||:!!! !|||||||||! !||| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThr 26225 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACG : 26168 157 : ArgProArgLysMetProHisProAlaGluTyrPheIleAsnGlnGluLysTyrTyrTyr : 176 ||| !!||| !.!. !:!!|||||| ! ||||||:!!:!!:!!!!:||||||:!!||| ArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyr 26167 : CGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTAC : 26108 177 : ValLeuLeuLeuAsnThrTyrValGlyTyrValAlaCysValSerIleAlaValAlaAla : 196 :!!:!!:!! !:!!! !|||:!!! ! ||| ! !:!!|||:!! ! !|||..! LeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCys 26107 : TTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGC : 26048 197 : AspThrMetTyrValLeuLeuValGluHisIleCysGlyMetTyrGlyVal : 213 |||.!!! ||||||! ! !|||:!!||| !||||||:!!! !.!:!! AspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 26047 : GATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 25995 vulgar: CbirOr209 136 213 . LHQN01017803.1 26225 25994 - 177 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25995 26225 177 - . gene_id 1 ; sequence CbirOr209 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25995 26225 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25995 26225 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25995 26225 177 - . alignment_id 1 ; Query CbirOr209 ; Align 26226 137 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr209 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 136 -> 210 Target range: 29607 -> 29385 137 : TyrAlaLeuLeuProLeuAlaGlyProValLeuAspIleIleSerProLeuAsnGlyThr : 156 !:!.!! !:!! !!:!!.!! !! !|||||||||:!!||||||||| !|||! !:!! PheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSer 29607 : TTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCG : 29550 157 : ArgProArgLysMetProHisProAlaGluTyrPheIleAsnGlnGluLysTyrTyrTyr : 176 ||| ! ! .!. !:!!||||||.!.||| !:!!:!!:!!|||:!!:!!|||||| ArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyrTyr 29549 : CGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTACTAC : 29490 177 : ValLeuLeuLeuAsnThrTyrValGlyTyrValAlaCysValSerIleAlaValAlaAla : 196 !|||:!! !:!!! ! ! !! ! ..!!.! !!! !:!! !:!!:!!..! TyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIleSerCys 29489 : TATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGT : 29430 197 : AspThrMetTyrValLeuLeuValGluHisIleCysGlyMet : 210 ||||||!!:|||:!! !:!!|||:!!||| ||||||:!: AspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeu 29429 : GACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTA : 29386 vulgar: CbirOr209 136 210 . LHQN01017803.1 29607 29385 - 118 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29386 29607 118 - . gene_id 2 ; sequence CbirOr209 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29386 29607 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29386 29607 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 29386 29607 118 - . alignment_id 2 ; Query CbirOr209 ; Align 29608 137 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr209 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 134 -> 213 Target range: 18429 -> 18192 135 : PheCysTyrAlaLeuLeuProLeuAlaGlyProValLeuAspIleIleSerProLeuAsn : 154 |||! !:! !! !:!!|||! !:!! !! !:!!:!!:!! !!.! !!! !||| PheLeuPheIleGlnValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsn 18429 : TTCTTGTTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAAT : 18372 155 : GlyThrArgProArgLysMetProHisProAlaGluTyrPheIleAsnGlnGluLysTyr : 174 !|||! ! ! ! !:!: ! |||!.! ! ||||||:!!:!!:!!! !:!!||| IleThrProSerLeuProValValValProGlyTyrTyrPheValAspGluValGluTyr 18371 : ATAACGCCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATAC : 18312 175 : TyrTyrValLeuLeuLeuAsnThrTyrValGlyTyrValAlaCysValSerIleAlaVal : 194 |||||| !:!!:!!|||:!! ! ! ! !:!! ! ||| !:!: ! ! TyrTyrTyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyrCys 18311 : TATTATTACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGT : 18252 195 : AlaAlaAspThrMetTyrValLeuLeuValGluHisIleCysGlyMetTyrGlyVal : 213 |||..!||||||! |||:!!:!!||||||:!!|||! !||||||:!!!:!!.!||| AlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaVal 18251 : GCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTG : 18193 vulgar: CbirOr209 134 213 . LHQN01017803.1 18429 18192 - 111 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18193 18429 111 - . gene_id 3 ; sequence CbirOr209 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18193 18429 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18193 18429 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18193 18429 111 - . alignment_id 3 ; Query CbirOr209 ; Align 18430 135 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr209 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 126 -> 204 Target range: 33717 -> 33483 127 : SerIleCysIleIleGlyPheValPheCysTyrAlaLeuLeuProLeuAlaGlyProVal : 146 |||:!! !||| ! ! |||! ! !:!:!! ! !|||||| ! ! !:!! SerValThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIle 33717 : TCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATC : 33660 147 : LeuAspIleIleSerProLeuAsnGlyThrArgProArgLysMetProHisProAlaGlu : 166 ||||||:!!|||||||||||||||! !:!!||||||||| ! !!:!! !||| ! LeuAspLeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyr 33659 : CTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTAC : 33600 167 : TyrPheIleAsnGlnGluLysTyrTyrTyrValLeuLeuLeuAsnThrTyrValGlyTyr : 186 ! !!:!.!!|||! !!!: ! ||||||||| !:!!:!! ! !!||| !!.! !! CysTyrPheAsnProAspAspTyrTyrTyrTyrValValGlyTyrThrSerAlaCysIle 33599 : TGTTACTTCAATCCGGACGACTACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATA : 33540 187 : ValAlaCysValSerIleAlaValAlaAlaAspThrMetTyrValLeuLeuVal : 204 ! ! !..!! ! !:!: !|||!.!||||||! !!!: :!!! !|||||| GlyMetAlaGlyLeuValLeuValGlyAlaAspIleIleMetIleHisLeuVal 33539 : GGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATTATGATACATCTTGTA : 33484 vulgar: CbirOr209 126 204 . LHQN01017803.1 33717 33483 - 100 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33484 33717 100 - . gene_id 4 ; sequence CbirOr209 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33484 33717 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33484 33717 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33484 33717 100 - . alignment_id 4 ; Query CbirOr209 ; Align 33718 127 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr196 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 273 -> 347 Target range: 51750 -> 52032 274 : IleSerLeuIleValTyrThrPheCysMetLeuThrGlnIlePheIleTyrCysTrpPhe : 293 ::: !|||:!: !!|||..! !!! !:!!:!! !|||:!!|||:!:||||||!:: ! LeuPheLeuLeuPheTyrValValTyrValMetLeuGlnLeuPheLeuTyrCysTyrVal 51751 : ctctTTTTGCTGTTCTACGTGGTTTACGTGATGCTACAATTATTCTTGTATTGTTACGTG : 51808 294 : GlySerLysValLysSerLys >>>> Target Intron 1 >>>> SerLeuGluL : 304 |||..!!:!:!!... !:!! 60 bp |||:!!|||: GlyGluArgLeuSerValGlu++ ++SerValGluI 51809 : GGTGAAAGGCTTTCCGTTGAGgt.........................agAGCGTTGAAA : 51901 305 : euThrAspArgIlePheGlnThrAspTrpProMetLeuAsnSerSerIleLysAsnSerL : 324 !!.!!:!! ! !!:!.!.:!!!!:||| !! |||::! !!!.!! ! !!!.! !| leAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLysAsnAlaLysLeuL 51902 : TAGCTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTGC : 51961 325 : euLeuIleIleMetLysArgAlaIleIleProIleGluPheThrThrAlaHisIleIleS : 344 ||||||||||||||::!||||||! :!!|||:!!:!!.!!|||.!!!.!....!! !! euLeuIleIleMetArgArgAlaArgLeuProLeuGlnIleThrAlaGlyArgPheAlaT 51962 : TACTAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCAGGTAGATTTGCTA : 52021 345 : erLeuAsnLeu : 347 !!!!!!.!||| hrPheThrLeu 52022 : CTTTCACTCTG : 52032 vulgar: CbirOr196 273 347 . KQ414804.1 51750 52032 + 119 M 27 81 5 0 2 I 0 56 3 0 2 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51751 52032 119 + . gene_id 1 ; sequence CbirOr196 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51751 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51751 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52032 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52032 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51751 52032 119 + . alignment_id 1 ; Query CbirOr196 ; Align 51751 274 81 ; Align 51892 301 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr202 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 89 -> 244 Target range: 44685 -> 45150 90 : ValSerMetLeuLeuAspCysPheArgGlyGluThrCysGlnProLysAsnSerGluGlu : 109 :!!!.! |||||| ! |||.!. !! !!!: ! !! ! !..!!!.!.!!!:!!: LeuLysSerLeuLeuLysCysMetAlaAspAspTrpSerThrValSerLysLysAspAsp 44686 : CTGAAATCTCTGCTGAAATGCATGGCCGACGATTGGAGCACAGTATCGAAAAAAGATGAT : 44743 110 : LysMetIleLeuSerArgTyrAsnArgLysAlaGluTrpCysAlaArgAlaPheMetIle : 129 ! ! !:!!|||!.! ! |||! .!!..! ! ! !! !::! !! :!: LeuAspThrMetSerAsnIleAlaArgIleThrArgLysThrIleIleSerSerThrVal 44744 : CTAGACACCATGAGTAACATCGCAAGGATCACCAGAAAGACTATAATAAGCAGCACAGTG : 44803 130 : MetCysGlnAlaSerCysValAlaHisIleLeuAlaProIleValGlyProGlnAspThr : 149 :!:|||!!. ! ! !:!!.!!:!!|||!!! !! !.!!:!! ! !:!! !!!:! LeuCysHisIleValValIleThrTyrIlePheLeuArgPheLeuThrArgLysTyrSer 44804 : TTATGTCACATTGTGGTCATCACTTATATATTTCTACGATTCCTCACCAGGAAGTACAGC : 44863 150 : AspArgProLeuProPheLysThrTyrLeuProTyrSerIleSerGlyLeuPheProTyr : 169 ! !! ! !|||! !|||:::.!!|||!!!||||||..!! !..!! ! ! !||| GlyThrArgLeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyr 44864 : GGCACCAGACTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTAC : 44923 170 : ValAlaThrTyrLeuGlnHisValGlyAlaIlePheTyrGlyValLeuLeuAsnValAla : 189 ! ! !||| :!! !!.:!! !||| !||||||!.!!.! ! ! !!..!||| GluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAla 44924 : GAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCC : 44983 190 : PheAspThrLeuValTyrGlyPheThrLeuHisValCysGlyGlnIleGluLeuLeuArg : 209 !!||||||!!!:!! !!!.! !||||||||||||||||||:!!..! !|||||| ValAspThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArg 44984 : GTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGA : 45043 210 : HisArgLeuSerGluIlePheArgAsnTyrProAspThrGluArgThrAspSerGlyLys : 229 :!!..!!!!.!!:!!:!! ! ! !! !! ||| !!:!.!! ! ! !|||||| AsnGluPheGlyLysLeuGlnAlaCysAspLysValThrLeuGlnAlaLysLeuGlyLys 45044 : AACGAATTCGGTAAGCTTCAAGCATGCGATAAAGTAACATTACAGGCGAAGTTGGGGAAA : 45103 230 : AspAlaMetIleAspGluCysValLysHisHisLeuHisValHis : 244 !!.!..!! ! !!|||! !:!!!!.... !:!! :!!||| IleValGlnLysHisGluTyrLeuAsnArgPheValSerLeuHis 45104 : ATCGTGCAGAAACACGAATATCTTAACAGGTTCGTATCATTGCac : 45150 vulgar: CbirOr202 89 244 . KQ414804.1 44685 45150 + 109 M 155 465 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44686 45150 109 + . gene_id 1 ; sequence CbirOr202 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44686 45150 . + . KQ414804.1 exonerate:protein2genome:local exon 44686 45150 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44686 45150 109 + . alignment_id 1 ; Query CbirOr202 ; Align 44686 90 465 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr202 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 146 -> 252 Target range: 31314 -> 31635 147 : GlnAspThrAspArgProLeuProPheLysThrTyrLeuProTyrSerIleSerGlyLeu : 166 ||| ! !||||||! !|||! !!:! !|||!!!|||!:!..!||| !! !:!! GlnLysGlnAspArgLeuLeuLeuTyrProGlyTyrPheProPheAspIleArgProIle 31315 : CAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTATTTTCCCTTCGATATTCGTCCAATA : 31372 167 : PheProTyrValAlaThrTyrLeuGlnHisValGlyAlaIlePheTyrGlyValLeuLeu : 186 ! :!!:!!||| !!!!! !!.||| !||| !:!! !!.!|||:!! ! GlyValLeuLeuSerThrAsnPheGlyGlnValLeuAlaAlaTyrSerAlaValIleSer 31373 : GGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCAGCGTATTCCGCTGTTATCAGT : 31432 187 : AsnValAlaPheAspThrLeuValTyrGlyPheThrLeuHisValCysGlyGlnIleGlu : 206 !!..!.!! ! ||||||!!!:!! !.!.! !:!!|||:!!|||||||||.!!||| TyrThrThrValAspThrPheIleAlaMetLeuIleMetHisIleCysGlyGlnPheGlu 31433 : TACACCACCGTGGATACATTTATCGCGATGCTGATAATGCACATATGCGGACAATTTGAG : 31492 207 : LeuLeuArgHisArgLeuSerGluIlePheArgAsnTyrProAspThrGluArgThrAsp : 226 :!!||||||!!.!:!||| !!..!:!:.!. !:!! ! ! ! |||..!!!!..!||| IleLeuArgGlnLysLeuArgArgLeuMetAspAspGluLysLysThrArgSerValAsp 31493 : ATACTGAGACAGAAATTACGAAGGCTGATGGATGACGAGAAGAAGACCAGAAGCGTGGAT : 31552 227 : SerGlyLysAspAlaMetIleAspGluCysValLysHis<->HisLeuHisValHisGlu : 245 ..! !:!! ! ! !:!!:!! ! !!:!||| ||||||:!! GluIleGlnLysGluLeuValLeuIleIleGluArgHisGluHisLeuAsnTrp***Ile 31553 : GAGATTCAGAAGGAGCTGGTTTTGATCATAGAGAGGCATGAGCATCTAAATTggtgaata : 31612 246 : IleValArgArgIleGlnSer : 252 |||::::::......|||||| IleLeuLysAsnPheGlnSer 31613 : attttgaagaattttcagagT : 31635 vulgar: CbirOr202 146 252 . KQ414804.1 31314 31635 + 104 M 93 279 G 0 3 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31315 31635 104 + . gene_id 2 ; sequence CbirOr202 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31315 31635 . + . KQ414804.1 exonerate:protein2genome:local exon 31315 31635 . + . insertions 3 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 31315 31635 104 + . alignment_id 2 ; Query CbirOr202 ; Align 31315 147 279 ; Align 31597 240 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr209 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 126 -> 214 Target range: 475509 -> 475773 127 : SerIleCysIleIleGlyPheValPheCysTyrAlaLeuLeuProLeuAlaGlyProV : 146 !!!:!! :!! ! ! :!!||| ! !||||||! !!!!:!!..! !: ThrValLeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerSerLysI 475510 : ACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGTCTAAGA : 475567 147 : alLeuAspIleIleSerProLeuAsnGlyThrArgProArgLysMetProHisProAl : 165 !!|||||| !:!:! !|||||||||! !:!!||||||!!! ! ! ! leLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleArgIl 475568 : TCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaat : 475624 166 : aGluTyrPheIleAsnGlnGluLysTyrTyrTyrValLeuLeuLeuAsnThrTyrVal : 184 |||||||||||||||:!!:!!||||||!:!|||:!! !:!!:!! !! ! !||| eGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrVal 475625 : agaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGTA : 475681 185 : GlyTyrValAlaCysValSerIleAlaValAlaAlaAspThrMetTyrValLeuLeuV : 204 ! !:!! !! !! !!!!! !||||||.!!!!:.!!!!:!:!..!:!!! !: ThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrpL 475682 : ACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGGT : 475741 205 : alGluHisIleCysGlyMetTyrGlyValLeu : 214 !!:!!||| ! ...:::::: :::::: euGlnHisCysIleSerLeuPheGluIleVal 475742 : TGCAACATTGCATaagtttatttgaaattgtt : 475773 vulgar: CbirOr209 126 214 . KQ414815.1 475509 475773 + 112 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475510 475773 112 + . gene_id 1 ; sequence CbirOr209 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475510 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475510 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475510 475773 112 + . alignment_id 1 ; Query CbirOr209 ; Align 475510 127 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr203 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 124 -> 213 Target range: 457144 -> 457411 125 : LeuPheThrLeuGlnMetTrpIleIleValValValTyrIleValTrpIlePheThrP : 144 :!!.!!|||:!!...! !:: ! !!.!:!!||| !! !..!! ! !.!! !| MetIleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheP 457145 : ATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTC : 457202 145 : roGluIleLeuAspValIleSerProLeuAsnGluSerArgProArgIleGluSerPh : 163 || !:!!||||||:!!:!: !||||||||||||||||||||| !! !! !.! roIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrLe 457203 : CGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCT : 457259 164 : eLysLeuGluPhePheIleAspLysAspArgTyrIleTyrPheThrArgPheTyrIle : 182 !! ! !|||!:!|||:!!|||! ! ! !:!|||!!::!!!:!! !! ! :!!||| uThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIle 457260 : TACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATT : 457316 183 : CysPheValAlaIleIleIleIleThrIlePheLeuSerAsnPheSerIleValLeuT : 202 ! ! !:!:||| !|||! !!. !:!!||| |||:!!:!!:!!| IleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleT 457317 : ATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAA : 457376 203 : hrPheThrGlnHisValCysGlyMetCysLysLeu : 213 || !..!! !||||||||||||:!!! !|||||| hrAsnValLeuHisValCysGlyLeuPheLysLeu 457377 : CGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr203 124 213 . KQ414815.1 457144 457411 + 132 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457145 457411 132 + . gene_id 1 ; sequence CbirOr203 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457145 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457145 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457145 457411 132 + . alignment_id 1 ; Query CbirOr203 ; Align 457145 125 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr203 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 124 -> 214 Target range: 475503 -> 475773 125 : LeuPheThrLeuGlnMetTrpIleIleValValValTyrIleValTrpIlePheThrP : 144 ::: !|||:!!! !:!:!:: !! !:!! !!..! |||:!! :!!|||:!! IleValThrValLeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerS 475504 : attgtTACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGT : 475561 145 : roGluIleLeuAspValIleSerProLeuAsnGluSerArgProArgIleGluSerPh : 163 !!:!!||||||||| !:!:! !|||||||||||||||||||||!!! ... !.. erLysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIl 475562 : CTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAt : 475618 164 : eLysLeuGluPhePheIleAspLysAspArgTyrIleTyrPheThrArgPheTyrIle : 182 .::::::|||:::||||||::::!!.!.!:!|||.!!|||.!.!:! !.!!||| eArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGln 475619 : acgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAG : 475675 183 : CysPheValAlaIleIleIleIleThrIlePheLeuSerAsnPheSerIleValLeuT : 202 ! ! ..! !:!!:!:.!! !|||! !:!:!!:!!!.! :!!||| !! !! ThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrM 475676 : ACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCA : 475735 203 : hrPheThrGlnHisValCysGlyMetCysLysLeuLeu : 214 !!:: !|||||| ! ...::: ::::::::: etTrpLeuGlnHisCysIleSerLeuPheGluIleVal 475736 : TGTGGTTGCAACATTGCATaagtttatttgaaattgtt : 475773 vulgar: CbirOr203 124 214 . KQ414815.1 475503 475773 + 123 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475504 475773 123 + . gene_id 2 ; sequence CbirOr203 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475504 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475504 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475504 475773 123 + . alignment_id 2 ; Query CbirOr203 ; Align 475504 125 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr203 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 125 -> 214 Target range: 481971 -> 482238 126 : PheThrLeuGlnMetTrpIleIleValValValTyrIleValTrpIlePheThrProG : 145 ...||| ! !!!:!:: ! |||:!!:!! |||:!!!! !.!.:!! ! IleThrAlaLeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerP 481972 : attacagcGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTT : 482029 146 : luIleLeuAspValIleSerProLeuAsnGluSerArgProArgIleGluSerPheLy : 164 :!!|||||||||||| !||||||||||||!!!||| !!!.! ! !! ! .. heValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSe 482030 : TCGTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATC : 482086 165 : sLeuGluPhePheIleAspLysAspArgTyrIleTyrPheThrArgPheTyrIleCys : 183 !:!!|||!:!|||||||||:!!.!.!:!||| ! !|||! !! !|||:!! !! rMetGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrp 482087 : AATGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGG : 482143 184 : PheValAlaIleIleIleIleThrIlePheLeuSerAsnPheSerIleValLeuThrP : 203 ||| ! !:!!:!!:!! !||||||.!!:!!.!!! !!!:!::!!:!!! !! PheSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetT 482144 : TTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGT : 482203 204 : heThrGlnHisValCysGlyMetCysLysLeuLeu : 214 :: !:!!|||!.!....!!:!!! !! |||:!! rpLeuGluHisAlaAlaSerLeuPheThrLeuVal 482204 : GGCTTGAACACGCTGCAAGCTTGTTCACCCTTGTA : 482238 vulgar: CbirOr203 125 214 . KQ414815.1 481971 482238 + 115 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481972 482238 115 + . gene_id 3 ; sequence CbirOr203 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481972 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 481972 482238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481972 482238 115 + . alignment_id 3 ; Query CbirOr203 ; Align 481972 126 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr203 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 177 Query range: 88 -> 215 Target range: 1225871 -> 1224024 89 : TyrLysLysLeuPheAspTyrMetTrpArgAspTrpAlaLeuGlnLysThrLysAs : 107 ::::::|||||||||||| !||| ||| ||| !||| !:!!.!!||||| PheArgLysLeuPheAspLeuMetValArgArgTrpLysLeuLeuGluAlaLysAs 1225871 : tttcgaaaattattcgatcTCATGGTACGAAGATGGAAACTGTTGGAAGCAAAGGA : 1225817 108 : pGluIleLysIleMetHisAspTyrAlaGluThrThrArgLeuValMetLeuLeuP : 126 |||||||:!!|||:!! ! ! |||.!!...! ! !! ! !:!!! !|||! pGluIleGluIleLeuLysLysTyrThrSerLysGlyMetArgLeuArgGluLeuT 1225816 : CGAAATAGAGATACTGAAGAAATACACCAGTAAAGGGATGAGACTTAGAGAACTGT : 1225760 127 : heThr{L} >>>> Target Intron 1 >>>> {eu}GlnMetTrpIleIle : 133 :!! !{ } 1463 bp { !}..!:!!||||||:!! yrLys{A}++ ++{sp}SerLeuTrpIleVal 1225759 : ACAAA{G}gt.........................ag{ac}tCGTTGTGGATAGTT : 1224276 134 : ValValValTyrIleValTrpIlePheThrProGluIleLeuAspValIleSerPr : 152 :!!:!!||||||!!: !!:: !!!.! ! ! !:!!|||||||||:!!:!!|| LeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAspValValAlaPr 1224275 : CTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCC : 1224219 153 : oLeuAsnGluSerArgProArgIleGluSerPheLysLeuGluPhe<->PheIleA : 170 ||||||||||!!!|||||||||! ! !.!! !:!!...!:! ||||||| oLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleA 1224218 : GTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAG : 1224162 171 : spLysAspArgTyrIleTyrPheThrArgPheTyrIleCysPheValAlaIleIle : 188 ||:!! !!..!:!!.!!||| !..!!.!|||:!!:!!! ! ! !!.!||| ! spGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSer 1224161 : ACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCC : 1224108 189 : IleIleThrIlePheLeuSerAsnPheSerIleValLeuThrPheThrGlnHisVa : 207 ! ! !!!:.!.:!!:!! !! !:!! !:!!|||.!!! ! |||:! CysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLe 1224107 : TGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCT : 1224051 208 : lCysGlyMetCysLysLeuLeuGly : 215 !||||||:!!! ! !:!!! !||| uCysGlyLeuPheAlaValCysGly 1224050 : TTGCGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: CbirOr203 88 215 . KQ414851.1 1225871 1224024 - 177 M 39 117 S 0 1 5 0 2 I 0 1459 3 0 2 S 1 2 M 39 117 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1225871 177 - . gene_id 1 ; sequence CbirOr203 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1225754 1225871 . - . KQ414851.1 exonerate:protein2genome:local exon 1225754 1225871 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1225752 1225753 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1224291 1225753 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1224291 1224292 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1224025 1224290 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224290 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1225871 177 - . alignment_id 1 ; Query CbirOr203 ; Align 1225872 89 117 ; Align 1224289 129 117 ; Align 1224169 168 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr203 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 136 Query range: 121 -> 215 Target range: 1243881 -> 1243599 122 : ValMetLeuLeuPheThrLeuGlnMetTrpIleIleValValValTyrIleValTr : 140 :::::::!!! !.!!:!! ! :!!!:: !.!! !:!!:!!!:!:!!:!!!: IleLeuValSerLeuSerGlyThrLeuPheTyrPheSerIleIlePheValLeuPh 1243881 : atactcGTCTCTCTTTCAGGTACTTTGTTCTATTTCTCGATAATATTCGTATTATT : 1243827 141 : pIlePheThrProGluIleLeuAspValIleSerProLeuAsnGluSerArgProA : 159 : !!!.! !||| !||||||||||||:!!|||||||||||||||!!!||| !!| eProLeuIleProProIleLeuAspValValSerProLeuAsnGluThrArgSerA 1243826 : TCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTC : 1243770 160 : rgIleGluSerPheLysLeuGluPhePheIleAspLysAspArgTyrIleTyrPhe : 177 |||||||| ...||||||::::::.!..!!|||! :::::: ...||| rgIleGluValIleLysLeuGlnTyrLeuPheAspMetGluLysAsnPheTyrSer 1243769 : GGATAGaagtaataaaattgcaataccTGTTCGACAtggagaagaatttttattca : 1243716 178 : ThrArgPheTyrIleCysPheValAlaIleIleIleIleThrIlePheLeuSerAs : 196 !!|||! ! !!!:: !:!!.!!!!:! !!!:! !:!!.!.:!!!!!! LeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMetValIleIleThrIl 1243715 : ttatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTAT : 1243659 197 : nPheSerIleValLeuThrPheThrGlnHisValCysGlyMetCysLysLeuLeuG : 215 !:!!:!! !:!!..!.!!! !!!.|||..!||||||:!:! ! :!!! !| eAspAlaLeuTyrValValIleIleHisHisThrCysGlyLeuPheAlaValCysG 1243658 : AGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCTGTTTGCG : 1243602 216 : ly : 215 || ly 1243601 : GG : 1243600 vulgar: CbirOr203 121 215 . KQ414851.1 1243881 1243599 - 136 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243881 136 - . gene_id 2 ; sequence CbirOr203 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243881 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243881 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243881 136 - . alignment_id 2 ; Query CbirOr203 ; Align 1243882 122 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr203 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 122 -> 215 Target range: 1234341 -> 1234059 123 : MetLeuLeuPheThrLeuGlnMetTrpIleIleValValValTyrIleValTrpIl : 141 !!::!!!!!|||:!! ! !:!: ! !.!!:!!||||||!:!:!::!! IleValPhePheSerAspThrLeuLeuSerPheMetValValPheLeuLeuValPr 1234341 : ATCGTGTTCTTCTCAGATACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCC : 1234287 142 : ePheThrProGluIleLeuAspValIleSerProLeuAsnGluSerArgProArgI : 160 !!!...! ! !.!!|||||||||:!! !||||||||||||!!!||||||||| oLeuValPheProPheLeuAspValValLeuProLeuAsnGluThrArgProArgG 1234286 : ATTAGTTTTTCCATTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGAC : 1234230 161 : leGluSerPheLysLeuGluPhe<->PheIleAspLysAspArgTyrIleTyrPhe : 177 :!!.!!|||!:!:!!.!.!:! !:!.!!|||:!!! !|||.!!!:! ! lnGlnGlyPheArgValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSer 1234229 : AGCAAGGATTCAGAGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGC : 1234176 178 : ThrArgPheTyrIleCysPheValAlaIleIleIleIleThrIlePheLeuSerAs : 196 ..! !||| ! :!:..!!::! !|||:!!:!!:!!:!!! !|||.!.:!!!!! ValTyrPheGlnLeuAlaTrpGlyAlaValValValValMetIleIleIleThrVa 1234175 : GTGTACTTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGT : 1234119 197 : nPheSerIleValLeuThrPheThrGlnHisValCysGlyMetCysLysLeuLeuG : 215 !|||:!: !:!!! !.!.! !!!.|||!.! !!||||||! ! :!!! !| lAspSerLeuTyrMetIleIleIleHisHisAlaSerGlyMetPheAlaValCysG 1234118 : AGACTCGTTGTACATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTGTGCG : 1234062 216 : ly : 215 || ly 1234061 : GG : 1234060 vulgar: CbirOr203 122 215 . KQ414851.1 1234341 1234059 - 113 M 45 135 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234341 113 - . gene_id 3 ; sequence CbirOr203 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234341 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234341 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234341 113 - . alignment_id 3 ; Query CbirOr203 ; Align 1234342 123 135 ; Align 1234204 168 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr203 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 125 -> 215 Target range: 1240094 -> 1239821 126 : PheThrLeuGlnMetTrpIleIleValValValTyrIleValTrpIlePheThrPr : 144 .!!:!!:!! :!:!:: :::::: :::::::::||| ... || IleSerValValLeuPheSerValLeuPheIlePheLeuValValProIlePhePr 1240094 : ATTTCAGTCGTTTTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcc : 1240040 145 : oGluIleLeuAspValIleSerProLeuAsnGluSerArgProArgIleGluSerP : 163 | :::||||||:!!:!!!.!||||||||||||!!!||| !!||| ::: | oProLeuLeuAspIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIleP 1240039 : tcctcttctggACATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatat : 1239983 164 : heLysLeuGluPhe<->PheIleAspLysAspArgTyrIleTyrPheThrArgPhe : 180 |||||:::...!:! .!!||||||!:!|||..! ! ! .!!||| !||| heLysValAsnTyrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPhe 1239982 : tcaaagttaaTTACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTT : 1239929 181 : TyrIleCysPheValAlaIleIleIleIleThrIlePheLeuSerAsnPheSerIl : 199 :!!:!:! !!::..!.!!|||! !:!! ! ! ! ! ||||||::: ! !|| HisLeuSerTrpThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIl 1239928 : CACTTGTCTTGGACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGAT : 1239872 200 : eValLeuThrPheThrGlnHisValCysGlyMetCysLysLeuLeuGly : 215 | !:!! !.!!! !!!.|||..! !!|||:!!! ! :!! !||| eTyrValLeuLeuIleHisHisThrSerGlyLeuPheAlaValAlaGly 1239871 : ATACGTCCTTCTTATTCATCATACCAGCGGTCTGTTTGCTGTGGCTGgg : 1239822 vulgar: CbirOr203 125 215 . KQ414851.1 1240094 1239821 - 105 M 42 126 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240094 105 - . gene_id 4 ; sequence CbirOr203 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239822 1240094 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240094 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240094 105 - . alignment_id 4 ; Query CbirOr203 ; Align 1240095 126 126 ; Align 1239966 168 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr205 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 343 -> 386 Target range: 1222499 -> 1222370 344 : AlaLysTrpTyrLysThrSerIleLysCysGlnLysLeuLeuLeuLeuIleMetAs : 362 :!!|||||||||:!! ! !!:!!||| ! |||||||||:!!! ! !!!:...! SerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTyrThrMetGlnMe 1222499 : TCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTACACGATGCAAAT : 1222445 363 : nArgThrValTyrProCysLysIleThrAlaGlyLysIleLeuIleLeuSerIleG : 381 |||:!!:!! ||||||! !:!!||||||||| !:!:! ! :!!!:!|||| tArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisGluMetAsnIleG 1222444 : GAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATGAGATGAACATCG : 1222388 382 : luSerPheGlyThrVal : 386 |||||||||||! !||| luSerPheGlyIleVal 1222387 : AGAGTTTCGGAATAGTA : 1222371 vulgar: CbirOr205 343 386 . KQ414851.1 1222499 1222370 - 104 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222371 1222499 104 - . gene_id 1 ; sequence CbirOr205 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1222371 1222499 . - . KQ414851.1 exonerate:protein2genome:local exon 1222371 1222499 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222371 1222499 104 - . alignment_id 1 ; Query CbirOr205 ; Align 1222500 344 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr209 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 167 Query range: 123 -> 213 Target range: 1224303 -> 1224030 124 : LeuAlaTyrSerIleCysIleIleGlyPheValPheCysTyrAlaLeuLeuProLe : 142 ||| :::||| :!: ! !!:!!!!. ||| ! !!!!||||| LeuIlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLe 1224303 : ttaattttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATT : 1224249 143 : uAlaGlyProValLeuAspIleIleSerProLeuAsnGlyThrArgProArgLysM : 161 | !..!||||||||||||:!!:!!:!!|||||||||! !||||||||||||!:!: uIleAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgL 1224248 : GATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGC : 1224192 162 : etProHisProAlaGluTyr<->PheIleAsnGlnGluLysTyrTyrTyrValLeu : 178 !: !! !|||!.!...||| ||||||:!!:!! ! :!!:!!!:!||| !:!! euLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerVal 1224191 : TTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTG : 1224138 179 : LeuLeuAsnThrTyrValGlyTyrValAlaCysValSerIleAlaValAlaAlaAs : 197 !!!!:!! !|||..!.!! :!!:!!|||! !! !!!: !:!!|||!.!|| AsnPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAs 1224137 : AATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGA : 1224081 198 : pThrMetTyrValLeuLeuValGluHisIleCysGlyMetTyrGlyVal : 213 |! !:!:|||:!! !:!!:!! |||:!!||||||:!!!:!!.!||| pMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaVal 1224080 : TATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: CbirOr209 123 213 . KQ414851.1 1224303 1224030 - 167 M 44 132 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224303 167 - . gene_id 1 ; sequence CbirOr209 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224303 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224303 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224303 167 - . alignment_id 1 ; Query CbirOr209 ; Align 1224304 124 132 ; Align 1224169 168 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr209 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 144 Query range: 132 -> 213 Target range: 1243848 -> 1243605 133 : PheValPheCysTyrAlaLeuLeuProLeuAlaGlyProValLeuAspIleIleSe : 151 ||| !.!. !:!!.!|||!!!|||||| ! !|||:!!||||||:!!:!!|| PheSerIleIlePheValLeuPheProLeuIleProProIleLeuAspValValSe 1243848 : TTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTC : 1243794 152 : rProLeuAsnGlyThrArgProArgLysMetProHisProAlaGluTyrPheIleA : 170 ||||||||||! !|||||| !!|||! ! :::|||.!..!!: rProLeuAsnGluThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheA 1243793 : ACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCG : 1243737 171 : snGlnGluLysTyrTyrTyrValLeuLeuLeuAsnThrTyrValGlyTyrValAla : 188 !!...|||||| :::||| ||| :!! !!||| ! ! !!! !! ! spMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMet 1243736 : ACAtggagaagaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATG : 1243683 189 : CysValSerIleAlaValAlaAlaAspThrMetTyrValLeuLeuValGluHisIl : 207 !:!!! !:!! !:!!.!! !|||.!!:!:||||||:!!:!!:!!.!.|||! ThrMetMetValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisTh 1243682 : ACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACAC : 1243626 208 : eCysGlyMetTyrGlyVal : 213 ||||||:!:!:!!.!||| rCysGlyLeuPheAlaVal 1243625 : GTGTGGCTTATTCGCTGTT : 1243606 vulgar: CbirOr209 132 213 . KQ414851.1 1243848 1243605 - 144 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243848 144 - . gene_id 2 ; sequence CbirOr209 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243848 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243848 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243848 144 - . alignment_id 2 ; Query CbirOr209 ; Align 1243849 133 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr209 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 133 Query range: 119 -> 213 Target range: 1229518 -> 1229230 120 : ArgLysPheThrLeuAlaTyrSerIleCysIleIleGlyPheValPheCys<->Ty : 137 |||:!! !:!!:!!!.!!:!|||:!! ! !:!! !|||!.!.!.||| !: ArgGluSerSerIleValPheSerLeuAspAlaLeuLeuPheAlaMetCysValPh 1229518 : CGCGAAAGTTCCATCGTATTTTCCTTAGATGCTTTACTCTTCGCAATGTGTGTTTT : 1229464 138 : rAlaLeuLeuProLeuAlaGlyProValLeuAspIleIleSerProLeuAsnGlyT : 156 ! !|||:!!|||||| !||||||!.!|||||||||:!! !|||! !|||! !| eLeuLeuValProLeuPheGlyProAlaLeuAspIleValLeuProSerAsnGluT 1229463 : CTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCGTCCTTCCATCAAATGAAA : 1229407 157 : hrArgProArgLysMetProHisProAlaGluTyrPheIle<->AsnGlnGluLys : 173 |||||||||||:!!...! ! ! !!.!.!.|||.!.||| :!!|||! ! ! hrArgProArgGlnGlnLeuPheArgValAsnTyrIleIlePheAspGlnAlaAsp 1229406 : CTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAATTTTCGACCAAGCAGAC : 1229353 174 : TyrTyrTyrValLeuLeuLeuAsnThrTyrValGlyTyrValAlaCysValSerIl : 192 |||!:!!:! !:!!! !:!!.!. !!:! ! !! :!!!.! !|||! ! TyrPhePheTyrValTyrIleGlnLeuPheTrpCysThrIleValLeuValMetAl 1229352 : TATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACAATCGTTCTTGTAATGGC : 1229296 193 : eAlaValAlaAlaAspThrMetTyrValLeuLeuValGluHisIleCysGlyMetT : 211 ! !:!!.!!!.!|||:!!:!!|||:!!:!!:!!:!! ! ||| ! !!||||||! aIleIleThrValAspSerLeuTyrMetIleIleIleTyrHisAlaSerGlyMetP 1229295 : CATTATCACCGTAGATTCATTGTACATGATCATAATTTACCATGCCAGCGGAATGT : 1229239 212 : yrGlyVal : 213 :!!.!:!! heAlaIle 1229238 : TCGCTATA : 1229231 vulgar: CbirOr209 119 213 . KQ414851.1 1229518 1229230 - 133 M 17 51 G 0 3 M 33 99 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229231 1229518 133 - . gene_id 3 ; sequence CbirOr209 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229231 1229518 . - . KQ414851.1 exonerate:protein2genome:local exon 1229231 1229518 . - . insertions 6 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229231 1229518 133 - . alignment_id 3 ; Query CbirOr209 ; Align 1229519 120 51 ; Align 1229465 137 99 ; Align 1229363 170 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr210 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 147 Query range: 335 -> 395 Target range: 1242796 -> 1242524 336 : TyrAsnCysAspTrpTyrThrIleSerLeuArgSerArgGlnLeuLeuLysPheTh : 354 ||||||! |||||| !! ! !!:!! !!! !!:!:!!:!!||| ! .!... TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIleVa 1242796 : TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATATAGT : 1242742 355 : rLeuLeuArgAlaSerLysProCysGlnIleMetAlaGlyAsnLeuTyrValMetS : 373 !! !:!!|||:!!.!!|||||||||:!!:!::!:||||||...||||||! !|||! lGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluMetA 1242741 : ACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAATGA : 1242685 374 : erMetGluAsnPheGlySer >>>> Target Intron 1 >>>> IleIleL : 382 :!!!:||||||||||||||| 92 bp !.!!| snIleGluAsnPheGlySer++ ++ThrPheL 1242684 : ACATTGAGAATTTTGGATCAgt.........................agacTTTCA : 1242566 383 : ysAlaCysIleSerTyrValThrMetLeuLeuSerLeuGln : 395 ||.!!|||||||||||| !!|||||||||||||||!!!:!! ysThrCysIleSerTyrPheThrMetLeuLeuSerPheLys 1242565 : AAACCTGCATATCGTACTTTACGATGCTCTTATCATTCAAA : 1242525 vulgar: CbirOr210 335 395 . KQ414851.1 1242796 1242524 - 147 M 44 132 5 0 2 I 0 88 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242525 1242796 147 - . gene_id 1 ; sequence CbirOr210 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1242665 1242796 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242796 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242525 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242525 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242525 1242796 147 - . alignment_id 1 ; Query CbirOr210 ; Align 1242797 336 132 ; Align 1242573 380 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr210 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 335 -> 395 Target range: 1233381 -> 1233126 336 : TyrAsnCysAspTrpTyrThrIleSerLeuArgSerArgGlnLeuLeuLysPheTh : 354 |||::!! ! ||||||! !:!! !! !!:!! !!:!!:!:!!:!! ! ! TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMe 1233381 : TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGAT : 1233327 355 : rLeuLeuArgAlaSerLysProCysGlnIleMetAlaGlyAsnLeuTyrValMetS : 373 !! !:!!|||||| !||||||||| :!:! ||||||...||||||! !|||! tGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetA 1233326 : GCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGA : 1233270 374 : erMetGluAsnPheGlySer >>>> Target Intron 1 >>>> IleIleL : 382 :!||||||||||||!.!!:! 75 bp !.!!| snMetGluAsnPheAlaAsn++ ++ThrPheL 1233269 : ACATGGAGAACTTTGCAAACgt.........................agaCATTCA : 1233168 383 : ysAlaCysIleSerTyrValThrMetLeuLeuSerLeuGln : 395 ||.!!|||!!:|||||| !!|||||||||:!!||||||::! ysThrCysMetSerTyrPheThrMetLeuMetSerLeuArg 1233167 : AAACGTGCATGTCATACTTCACAATGCTGATGTCACTTAGA : 1233127 vulgar: CbirOr210 335 395 . KQ414851.1 1233381 1233126 - 132 M 44 132 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233127 1233381 132 - . gene_id 2 ; sequence CbirOr210 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233250 1233381 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233381 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233127 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233127 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233127 1233381 132 - . alignment_id 2 ; Query CbirOr210 ; Align 1233382 336 132 ; Align 1233175 380 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr210 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 335 -> 380 Target range: 1228545 -> 1228410 336 : TyrAsnCysAspTrpTyrThrIleSerLeuArgSerArgGlnLeuLeuLysPheTh : 354 |||::!! ! ||||||! !:!!||| !!:!! !!:!!:!:!!:!! ! .!.! TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 355 : rLeuLeuArgAlaSerLysProCysGlnIleMetAlaGlyAsnLeuTyrValMetS : 373 !! !:!!|||||| !||||||||| :!:! ||||||...||||||! !|||! tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 374 : erMetGluAsnPheGlySerIle : 380 :!||||||||||||!.!!:!:!! snMetGluAsnPheAlaAsnVal 1228433 : ACATGGAGAACTTTGCAAACGTT : 1228411 vulgar: CbirOr210 335 380 . KQ414851.1 1228545 1228410 - 108 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1228545 108 - . gene_id 3 ; sequence CbirOr210 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228411 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1228545 108 - . alignment_id 3 ; Query CbirOr210 ; Align 1228546 336 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr206 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 310 -> 399 Target range: 807314 -> 807581 311 : LeuThrValTyrIleAlaGlnLeuLeuHisLeuPheLeuHisPheTrpGlnAlaGlnP : 330 !!!..!:!! :!:.!! !|||:!!!!.|||!:!|||:!! !!:: !!.!.!. PheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnT 807315 : TTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACA : 807372 331 : heLeuLeuAspTyrSerValLeuProTyrGluSerIleCysArgAlaAsnTrpTyrTy : 349 ||| !... !!!! ! ! ! :!!:!! !! ! !:!! !|||||| hrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrAr 807373 : CACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCG : 807429 350 : rThrSerLysArgCysGlnLysLeuLeuLeuLeuIleMetAsnArgThrMetLysPro : 368 ! ! ! !!.!... !:! !||||||||||||!!::!!||| !! ..!||| gCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerPro 807430 : TTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCT : 807486 369 : CysLysIleThrAlaGlyLysIleMetIleLeuSerIleGluSerPheAlaAlaValV : 388 ! !:::|||||||||||||||.!!:!: :!!!:!:!! !!!||| !! !:!!: TyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleL 807487 : TATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATAC : 807546 389 : alLysAlaSerValSerTyrLeuThrIlePheArg : 399 !!|||||||||! !|||||||||:!!:!!.!.!:! euLysAlaSerGlySerTyrLeuSerValMetLys 807547 : TGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: CbirOr206 310 399 . KQ414940.1 807314 807581 + 102 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807315 807581 102 + . gene_id 1 ; sequence CbirOr206 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807315 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807315 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807315 807581 102 + . alignment_id 1 ; Query CbirOr206 ; Align 807315 311 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr193 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 281 -> 366 Target range: 807332 -> 807587 282 : MetPheThrGlnIleLeuIleTyrCysTrpTyrGlyAsnGluValLysLeuLysSerV : 301 :!!.!.! !|||:!:! !:!!|||..!!:: |||||| !:!!:!!! !::!!!!! LeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrG 807333 : TTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCG : 807390 302 : alGlnLeuAlaAsnGluIlePheGluMetAspTrpIleThrValAspLysGluValLy : 320 !:!!:!!|||.!.! !!:!!!: !||| ! ! ! !! !.!.!.! luGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAl 807391 : AAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGC : 807447 321 : sGluGlyLeuMetMetIleMetAsnArgSerLeuValProIleGluPheSerSerAla : 339 ..!! !|||:!::!!|||!!::!!|||.!! ! !||| !....!.!!!:!!!.! aArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGly 807448 : CAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGA : 807504 340 : HisIlePheThrValAsnLeuAspSerPheValLysIleLeuLysAlaSerTyrSerA : 359 ! .!! !! !!:!!|||||| !!!!||| !:!!||||||||||||||| !||| LysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerT 807505 : AAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGT : 807564 360 : laTyrSerIleLeuGlnGlnMet : 366 ! |||:!!:!!:!! !||| yrLeuSerValMetLysValMet 807565 : ATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: CbirOr193 281 366 . KQ414940.1 807332 807587 + 102 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807333 807587 102 + . gene_id 1 ; sequence CbirOr193 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807333 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807333 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807333 807587 102 + . alignment_id 1 ; Query CbirOr193 ; Align 807333 282 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr203 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 117 -> 215 Target range: 32455 -> 32749 118 : ThrThrArgLeuValMetLeuLeuPheThrLeuGlnMetTrpIleIleValValValTyr : 137 ||| |||... ...|||:!! !||| ! :!:!::||| !:!! !! !||| ThrLeuArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyr 32456 : ACtctccgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTAC : 32513 138 : IleValTrpIlePheThrProGluIleLeuAspValIleSerProLeuAsnGluSerArg : 157 !:!! ! !||| !||| ! |||:!!|||||||||:!!|||||||||||||||||| AlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArg 32514 : GCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGA : 32573 158 : ProArgIleGluSerPheLysLeuGluPhePheIleAspLysAspArgTyrIleTyrPhe : 177 ! !!.!:!! ! !!!:! !|||!:!|||:!!|||:::...:::|||... HisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuPro 32574 : CACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccA : 32633 178 : ThrArgPheTyrIleCysPheValAlaIleIleIleIleThrIlePheLeuSerAsnPhe : 197 ! ! !!!.:!!!!: ! ..!!.!! !:!! !:!:|||:!! ! !:!! IleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAsp 32634 : ATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgat : 32693 198 : SerIleValLeuThrPheThrGlnHisValCysGlyMetCysLysLeuLeuGly : 215 |||||| ::: ||| ! |||||||||!.!! ! !!!.:!!|||||| SerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIleLeuGly 32694 : tcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATTCTCGGG : 32749 vulgar: CbirOr203 117 215 . KQ415081.1 32455 32749 + 136 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32456 32749 136 + . gene_id 1 ; sequence CbirOr203 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32456 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32456 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32456 32749 136 + . alignment_id 1 ; Query CbirOr203 ; Align 32456 118 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr209 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 133 -> 214 Target range: 32503 -> 32746 134 : ValPheCysTyrAlaLeuLeuProLeuAlaGlyProValLeuAspIleIleSerProLeu : 153 :!!|||! !||||||:!!:!!! !!!! ! ! !:!!:!!|||:!:|||:!!|||||| IlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeu 32504 : ATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTA : 32561 154 : AsnGlyThrArgProArgLysMetProHisProAlaGluTyrPheIleAsnGlnGluLys : 173 |||! !:!!|||! !!.! !:!!|||:!! !!!.!|||||||||:!!:!!|||:::||| AsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLys 32562 : AACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaa : 32621 174 : TyrTyrTyrValLeuLeuLeuAsnThrTyrValGlyTyrValAlaCysValSerIleAla : 193 |||::: !:!! !|||:!!! ! !! ! ! !..! ! !!:!!!!!:!!||| TyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAla 32622 : tatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCC : 32681 194 : ValAlaAlaAspThrMetTyrValLeuLeuValGluHisIleCysGlyMetTyrGlyVal : 213 ..!|||!..|||::::::::::::......::! |||:!!|||!.!! !:!..!:!! ThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32682 : ACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32741 214 : Leu : 214 ||| Leu 32742 : CTC : 32746 vulgar: CbirOr209 133 214 . KQ415081.1 32503 32746 + 150 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32504 32746 150 + . gene_id 1 ; sequence CbirOr209 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32504 32746 . + . KQ415081.1 exonerate:protein2genome:local exon 32504 32746 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32504 32746 150 + . alignment_id 1 ; Query CbirOr209 ; Align 32504 134 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr208 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 343 -> 396 Target range: 26755 -> 27626 344 : AsnTrpTyrTyrThrSerGluArgCysArgLysIleLeuLeuLeuIleMetIleArgThr : 363 !:!|||||| .!! !! !|||...!:!|||:!:|||||||||:!::!! !:! ! SerTrpTyrAlaAlaProThrArgAlaGlnLysLeuLeuLeuLeuValLeuGlnLysCys 26756 : AGCTGGTACGCGGCGCCAACGCGGGCACAAAAATTGCTGCTGCTGGTGTTGCAGAAATGC : 26813 364 : IleLeuProCysArgIleThrAlaGlyLysLeuValThrLeuSerIleGluSerPheGly : 383 !!::!!||||||!!!:!!:!!|||!.!|||:!!|||||| !|||:!::!!! !!:!!.! MetValProCysSerLeuSerAlaAlaLysIleValThrAlaSerLeuGlnIleTyrAla 26814 : ATGGTGCCTTGTAGTTTATCGGCCGCTAAAATTGTCACCGCATCGCTGCAAATCTATGCT : 26873 384 : Val >>>> Target Intron 1 >>>> ValLeuLysThrSerIleSerTyrPheM : 394 ..! 712 bp :!!:!!:!!||||||:!!||||||||| Thr++ ++IleValGlnThrSerValSerTyrPheS 26874 : ACGgt.........................agATCGTCCAGACGTCGGTATCTTACTTCT : 27618 395 : etValLeu : 396 |||||| erValLeu 27619 : CTGTGCTG : 27626 vulgar: CbirOr208 343 396 . KQ415081.1 26755 27626 + 116 M 41 123 5 0 2 I 0 708 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 26756 27626 116 + . gene_id 1 ; sequence CbirOr208 ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 26756 26878 . + . KQ415081.1 exonerate:protein2genome:local exon 26756 26878 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 26879 26880 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 26879 27590 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 27589 27590 . + . intron_id 0 ; splice_site "aG" KQ415081.1 exonerate:protein2genome:local cds 27591 27626 . + . KQ415081.1 exonerate:protein2genome:local exon 27591 27626 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 26756 27626 116 + . alignment_id 1 ; Query CbirOr208 ; Align 26756 344 123 ; Align 27591 385 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr206 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 344 -> 387 Target range: 26752 -> 26881 345 : AlaAsnTrpTyrTyrThrSerLysArgCysGlnLysLeuLeuLeuLeuIleMetAsnArg : 364 !.!!:!|||||| .!! !!! !|||...||||||||||||||||||:!::!!.!.!:! GlySerTrpTyrAlaAlaProThrArgAlaGlnLysLeuLeuLeuLeuValLeuGlnLys 26753 : GGAAGCTGGTACGCGGCGCCAACGCGGGCACAAAAATTGCTGCTGCTGGTGTTGCAGAAA : 26810 365 : ThrMetLysProCysLysIleThrAlaGlyLysIleMetIleLeuSerIleGluSerPhe : 384 !||| !||||||!..:!!:!!|||!.!||||||:!:! ! !|||:!::!!! !!:! CysMetValProCysSerLeuSerAlaAlaLysIleValThrAlaSerLeuGlnIleTyr 26811 : TGCATGGTGCCTTGTAGTTTATCGGCCGCTAAAATTGTCACCGCATCGCTGCAAATCTAT : 26870 385 : AlaAlaVal : 387 |||.!!||| AlaThrVal 26871 : GCTACGGTA : 26881 vulgar: CbirOr206 344 387 . KQ415081.1 26752 26881 + 103 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 26753 26881 103 + . gene_id 1 ; sequence CbirOr206 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 26753 26881 . + . KQ415081.1 exonerate:protein2genome:local exon 26753 26881 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 26753 26881 103 + . alignment_id 1 ; Query CbirOr206 ; Align 26753 345 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr209 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 136 -> 213 Target range: 5005 -> 5236 137 : TyrAlaLeuLeuProLeuAlaGlyProValLeuAspIleIleSerProLeuAsnGlyThrAr : 157 !:! !! !||||||!!!!.!..!|||:!!|||||||||:!!! !|||||||||! !||||| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5006 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5066 158 : gProArgLysMetProHisProAlaGluTyrPheIleAsnGlnGluLysTyrTyrTyrValL : 178 | !!||| !.!. !:!!|||||| ! ||||||:!!:!!:!!!!:||||||:!!|||:!!: gAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuI 5067 : AGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGA : 5129 179 : euLeuLeuAsnThrTyrValGlyTyrValAlaCysValSerIleAlaValAlaAlaAspThr : 198 !!:!! !:!!! !|||:!!! ! ||| ! !:!!|||:!! ! !|||..!|||.!! leValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 5130 : TCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 5189 199 : MetTyrValLeuLeuValGluHisIleCysGlyMetTyrGlyVal : 213 ! ||||||! ! !|||:!!||| !||||||:!!! !.!:!! AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 5190 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 5236 vulgar: CbirOr209 136 213 . LHQN01025741.1 5005 5236 + 177 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5006 5236 177 + . gene_id 1 ; sequence CbirOr209 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5006 5236 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5006 5236 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5006 5236 177 + . alignment_id 1 ; Query CbirOr209 ; Align 5006 137 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr209 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 145 -> 213 Target range: 1621 -> 1825 146 : ValLeuAspIleIleSerProLeuAsnGlyThrArgProArgLysMetProHisProAlaGl : 166 |||||||||:!!||||||||| !|||! !:!!||| ! ! ! .!. !:!!|||||| ! ValLeuAspLeuIleSerProLysAsnGluSerArgGlyValAspPheIleTyrProAlaTy 1622 : GTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTCATTTATCCTGCATA : 1682 167 : uTyrPheIleAsnGlnGluLysTyrTyrTyrValLeuLeuLeuAsnThrTyrValGlyTyrV : 187 ||| !:!!:!!:!!|||:!!:!!||||||:!!|||:!! !:!!! ! ! !! ! . rTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHisMetLeuCysValIleT 1683 : CTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCACATGCTCTGCGTGATAA : 1745 188 : alAlaCysValSerIleAlaValAlaAlaAspThrMetTyrValLeuLeuValGluHisIle : 207 .!!.! !!! !:!! !:!!:!!..!||||||!!:|||:!! !:!!|||:!!||| hrValValPhePheValTyrIleSerCysAspThrIleTyrMetAsnIleValGlnHisAla 1746 : CTGTAGTGTTTTTCGTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGCG : 1805 208 : CysGlyMetTyrGlyVal : 213 ||||||:!: ..!||| CysGlyLeuLeuAsnVal 1806 : TGCGGATTACTGAACGTC : 1825 vulgar: CbirOr209 145 213 . LHQN01025741.1 1621 1825 + 124 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1622 1825 124 + . gene_id 2 ; sequence CbirOr209 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1622 1825 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1622 1825 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1622 1825 124 + . alignment_id 2 ; Query CbirOr209 ; Align 1622 146 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr209 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 134 -> 213 Target range: 11492 -> 11729 135 : PheCysTyrAlaLeuLeuProLeuAlaGlyProValLeuAspIleIleSerProLeuAsn : 154 |||! !:! !! !:!!|||! !.!! !! !:!!:!!:!! !!.! !!! !||| PheLeuPheIleGlnValProTrpThrThrArgLeuValAsnSerTyrLysThrGlnAsn 11493 : TTCTTGTTCATACAAGTGCCATGGACGACCCGATTGGTGAACTCGTACAAGACACAGAAT : 11550 155 : GlyThrArgProArgLysMetProHisProAlaGluTyrPheIleAsnGlnGluLysTyr : 174 !|||! ! ! !:!!.!. ! |||!.! ! ||||||:!!:!!:!!! !:!!||| IleThrProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGluValGluTyr 11551 : ATAACGCCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATAC : 11610 175 : TyrTyrValLeuLeuLeuAsnThrTyrValGlyTyrValAlaCysValSerIleAlaVal : 194 |||||| !:!!:!!|||:!! ! ! ! !:!! ! ||| !:!: ! ! TyrTyrTyrIleIleLeuHisGlyThrCysThrValLeuIleValValValValTyrCys 11611 : TATTATTACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGT : 11670 195 : AlaAlaAspThrMetTyrValLeuLeuValGluHisIleCysGlyMetTyrGlyVal : 213 |||..!||||||! |||:!!:!!||||||:!!|||! !||||||:!!!:!!.!||| AlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaVal 11671 : GCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTG : 11729 vulgar: CbirOr209 134 213 . LHQN01025741.1 11492 11729 + 111 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11493 11729 111 + . gene_id 3 ; sequence CbirOr209 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11493 11729 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11493 11729 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11493 11729 111 + . alignment_id 3 ; Query CbirOr209 ; Align 11493 135 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr203 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 126 -> 215 Target range: 4975 -> 5242 127 : ThrLeuGlnMetTrpIleIleValValValTyrIleValTrpIlePheThrProGluIleLe : 147 |||:!!!!.!!:! !:!! !!.!!.!:!!!:!!!: !! ! |||..! !! !||||| ThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLe 4976 : ACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCT : 5036 148 : uAspValIleSerProLeuAsnGluSerArgProArgIleGluSerPheLysLeuGluPheP : 168 ||||:!!:!!! !||||||||||||!!!||| !!|||:!: !!:! ! ! ! !:!| uAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrP 5037 : GGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATT : 5099 169 : heIleAspLysAspArgTyrIleTyrPheThrArgPheTyrIleCysPheValAlaIleIle : 188 ||:!!|||:!!|||!:!||| !|||!!.! ! ! :!!!!:! !.!!|||!.!:!!!!: heValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMet 5100 : TCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATG : 5159 189 : IleIleThrIlePheLeuSerAsnPheSerIleValLeuThrPheThrGlnHisValCysGl : 209 :!!|||:!!:!!|||! !:!! ! !:!!! ! !:!! ! !..!||||||!.!||||| LeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGl 5160 : CTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGG : 5222 210 : yMetCysLysLeuLeuGly : 215 |:!!! :!! !||| yLeuLeuAlaIleAlaGly 5223 : ATTGTTGGCCATTGCAGGG : 5242 vulgar: CbirOr203 126 215 . LHQN01025741.1 4975 5242 + 133 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4976 5242 133 + . gene_id 1 ; sequence CbirOr203 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4976 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4976 5242 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4976 5242 133 + . alignment_id 1 ; Query CbirOr203 ; Align 4976 127 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr203 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 123 -> 215 Target range: 1555 -> 1831 124 : LeuLeuPheThrLeuGlnMetTrpIleIleValValValTyrIleValTrpIlePheThrPr : 144 |||! !||||||:!!.!. !.!! ! !|||:!!!:!! ! ! ! .!!||||| LeuTyrPheThrValAsnGlyLeuPheCysTyrValIlePheThrSerValAlaIleThrPr 1556 : CTGTATTTCACAGTAAACGGACTGTTTTGCTACGTTATATTCACCTCAGTGGCGATTACGCC : 1616 145 : oGluIleLeuAspValIleSerProLeuAsnGluSerArgProArgIleGluSerPheLysL : 165 |...:!!||||||:!!||||||||| !|||||||||||| ! ! ! ! !!:! oArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValAspPheIleTyrProA 1617 : TCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTCATTTATCCTG : 1679 166 : euGluPhePheIleAspLysAspArgTyrIleTyrPheThrArgPheTyrIleCysPheVal : 185 ! ! !:! !:!!|||:!!!!:..!:!! !|||.!! !! ! !:!!!!: !! !||| laTyrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHisMetLeuCysVal 1680 : CATACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCACATGCTCTGCGTG : 1739 186 : AlaIleIleIleIleThrIlePheLeuSerAsnPheSerIleValLeuThrPheThrGlnHi : 206 !! !:!!:!:.!! !:!!!:!:!!||| ! !!!!||| !:!!!.!.!!..!||||| IleThrValValPhePheValTyrIleSerCysAspThrIleTyrMetAsnIleValGlnHi 1740 : ATAACTGTAGTGTTTTTCGTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCAACA : 1802 207 : sValCysGlyMetCysLysLeuLeuGly : 215 |!.!||||||:!: !!.:!!! !||| sAlaCysGlyLeuLeuAsnValSerGly 1803 : CGCGTGCGGATTACTGAACGTCTCTGGG : 1831 vulgar: CbirOr203 123 215 . LHQN01025741.1 1555 1831 + 122 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1556 1831 122 + . gene_id 2 ; sequence CbirOr203 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1556 1831 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1556 1831 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1556 1831 122 + . alignment_id 2 ; Query CbirOr203 ; Align 1556 124 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr209 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 134 -> 213 Target range: 1230 -> 993 135 : PheCysTyrAlaLeuLeuProLeuAlaGlyProValLeuAspIleIleSerProLeuAsnGl : 155 |||! !:! !! !:!!|||! !.!! !! !:!!:!!:!! !!.! !!! !||| PheLeuPheIleGlnValProTrpThrThrArgMetValAsnSerTyrLysThrGlnAsnIl 1230 : TTCTTGTTCATACAAGTGCCATGGACGACCCGAATGGTGAACTCGTACAAGACACAGAATAT : 1170 156 : yThrArgProArgLysMetProHisProAlaGluTyrPheIleAsnGlnGluLysTyrTyrT : 176 !|||! ! ! ! !:!: ! |||!.! ! ||||||:!!:!!:!!! !:!!||||||| eThrProSerLeuProValValValProGlyTyrTyrPheValAspGluValGluTyrTyrT 1169 : AACGCCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATT : 1107 177 : yrValLeuLeuLeuAsnThrTyrValGlyTyrValAlaCysValSerIleAlaValAlaAla : 196 || !:!!:!!|||:!! ! ! ! !:!! ! ||| !:!: ! !|||..! yrTyrIleIleLeuHisGlyThrCysThrValLeuIleValValValValTyrCysAlaCys 1106 : ATTACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 1047 197 : AspThrMetTyrValLeuLeuValGluHisIleCysGlyMetTyrGlyVal : 213 ||||||! |||:!!:!!||||||:!!|||! !||||||:!!!:!!.!||| AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaVal 1046 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTG : 994 vulgar: CbirOr209 134 213 . LHQN01027734.1 1230 993 - 110 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 994 1230 110 - . gene_id 1 ; sequence CbirOr209 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 994 1230 . - . LHQN01027734.1 exonerate:protein2genome:local exon 994 1230 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 994 1230 110 - . alignment_id 1 ; Query CbirOr209 ; Align 1231 135 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr203 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 129 Query range: 131 -> 215 Target range: 5672 -> 5420 132 : IleIleValValValTyrIleValTrpIlePheThrProGluIleLeuAspValIleSerPr : 152 :!! !!.!!.!:!!!:!!!: !! ! |||..! !! !|||||||||:!!:!!! !|| LeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetPr 5672 : TTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCC : 5612 153 : oLeuAsnGluSerArgProArgIleGluSerPheLysLeuGluPhePheIleAspLysAspA : 173 ||||||||||!!!||| !!|||:!: !!:! ! ! ! !:!|||:!!|||:!!|||! oLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspL 5611 : GTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACA : 5549 174 : rgTyrIleTyrPheThrArgPheTyrIleCysPheValAlaIleIleIleIleThrIlePhe : 193 :!||| !|||!!.! ! ! :!!!!:! !.!!|||!.!:!!!!::!!|||:!!:!!||| ysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPhe 5548 : AATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTC : 5489 194 : LeuSerAsnPheSerIleValLeuThrPheThrGlnHisValCysGlyMetCysLysLeuLe : 214 ! !:!! ! !:!!! ! !:!! ! !..!||||||!.!||||||:!!! :!! CysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAl 5488 : TGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGC : 5426 215 : uGly : 215 !||| aGly 5425 : AGGG : 5421 vulgar: CbirOr203 131 215 . LHQN01028732.1 5672 5420 - 129 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5672 129 - . gene_id 1 ; sequence CbirOr203 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5672 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5672 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5672 129 - . alignment_id 1 ; Query CbirOr203 ; Align 5673 132 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr209 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 173 Query range: 136 -> 213 Target range: 5657 -> 5426 137 : TyrAlaLeuLeuProLeuAlaGlyProValLeuAspIleIleSerProLeuAsnGlyThrAr : 157 !:! !! !||||||!!!!.!..!|||:!!|||||||||:!!! !|||||||||! !||||| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5657 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5597 158 : gProArgLysMetProHisProAlaGluTyrPheIleAsnGlnGluLysTyrTyrTyrValL : 178 | !!||| !.!. !:!!|||||| ! ||||||:!!:!!:!!!!:|||||| !|||:!!: gAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuI 5596 : AGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGA : 5534 179 : euLeuLeuAsnThrTyrValGlyTyrValAlaCysValSerIleAlaValAlaAlaAspThr : 198 !!:!! !:!!! !|||:!!! ! ||| ! !:!!|||:!! ! !|||..!|||.!! leValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 5533 : TCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 5474 199 : MetTyrValLeuLeuValGluHisIleCysGlyMetTyrGlyVal : 213 ! ||||||! ! !|||:!!||| !||||||:!!! !.!:!! AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 5473 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 5427 vulgar: CbirOr209 136 213 . LHQN01028732.1 5657 5426 - 173 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5427 5657 173 - . gene_id 1 ; sequence CbirOr209 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5427 5657 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5427 5657 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5427 5657 173 - . alignment_id 1 ; Query CbirOr209 ; Align 5658 137 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr202 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 249 -> 323 Target range: 870 -> 651 250 : IleGlnSerLeuPheValTrpThrValThrValLeuPheIlePheSerMetValThrLeuCysT : 271 |||.!.:!! !||| ! |||:!!.!!..!! !|||:!: ! !!!! :!!|||:!!||| IleAsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThrMetCysP 870 : ATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACAATGTGCT : 807 272 : hrSerIlePheGlnMetSerLysLysGluLeuLeuSerAlaLysPhePheSerLeuLeuLeuTy : 292 !!:!:!!|||!:!:!!!!!:!!! :!!:!!! !||| :!! !!!!.:!!|||:!!! !!: heAsnLeuPheArgLeuThrGlnThrLysValTyrSer---GlnValLeuAlaLeuIleProPh 806 : TCAACCTCTTTCGACTGACACAGACCAAGGTGTATTCG---CAAGTTTTAGCATTGATACCGTT : 747 293 : rLeuGlyCysMetLeuPheGlnValPheLeuTyrCysTrpTyrGlyAsnGluLeuGluLeuLys : 313 !:!!! ! !!:!!!!! |||:!!|||! !! !|||||||||||||||||| !:!!:!!||| eMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys 746 : CATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG : 684 314 : SerLysSerIleGlyAspAlaIleTyrSer : 323 !:::..! ! !||| !::::::||| ValArgAspGlnThrAspPheLeuPheSer 683 : GTACGTGATCAAACAGACTTCttattctca : 652 vulgar: CbirOr202 249 323 . LHQN01050085.1 870 651 - 103 M 34 102 G 1 0 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 652 870 103 - . gene_id 1 ; sequence CbirOr202 ; gene_orientation . LHQN01050085.1 exonerate:protein2genome:local cds 652 870 . - . LHQN01050085.1 exonerate:protein2genome:local exon 652 870 . - . insertions 0 ; deletions 1 LHQN01050085.1 exonerate:protein2genome:local similarity 652 870 103 - . alignment_id 1 ; Query CbirOr202 ; Align 871 250 102 ; Align 769 285 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr194 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 305 Query range: 189 -> 350 Target range: 1345 -> 457 190 : AspCysMetIleCysGlyLeuPheLeuHisIleCysCysGlnIleAspIleLeuLysCysAr : 210 ||| !:!:.!! !!||||||!!.:!!||||||! !||||||.!!!!:||||||:!! !|| AspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisAr 1345 : GACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCG : 1285 211 : gLeuArgLysCysLeuArgAsnArgAsn<->AspLeuSerGluCysValCysGlnHisGluS : 230 ||||!:!!.. ! !! !:!!|||.!. ..! !!.!:!!|||!.!! !!!.||| ! gLeuLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrA 1284 : TCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATC : 1222 231 : erIleTyr{Ly} >>>> Target Intron 1 >>>> {s}PheAlaTyrMetIleAsn : 239 !!||||||{||} 328 bp {|}|||||| ! !!:|||||| rgIleTyr{Ly}++ ++{s}PheAlaGluIleIleAsn 1221 : GCATATAC{AA}gt.........................ag{A}TTCGCTGAAATTATAAAC : 867 240 : GluLysPheArgValIleIleAlaValGlnPheAlaValSerThrLeuValLeuCysSerSe : 260 ! !||||||!!!:!!! !!:|||..!|||||| !|||!!!|||:!!..!:!!|||! !!: AlaLysPheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThrMetCysPheAs 866 : GCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACAATGTGCTTCAA : 804 261 : rMetPheGlnLeuAlaArgMetSerMetAsnAlaGluValValProLeuLeuLeuTyrThrI : 281 !:!:|||!:!|||.!!!:!! !.!:!! !!:!!:!!|||:!! !!|||:!!! !!:!! !: nLeuPheArgLeuThrGlnThrLysValTyrSerGlnValLeuAlaLeuIleProPheMetV 803 : CCTCTTTCGACTGACACAGACCAAGGTGTATTCGCAAGTTTTAGCATTGATACCGTTCATGG : 741 282 : leCysMetCysLeuGlnIleLeuIleTyrCysTrpTyrGlyAsnGluValLysLeuLys > : 301 !! !!:!!! ! !||||||!!! !! !||||||||||||||||||..!|||:!!||| alSerValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys++ 740 : TCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGgt. : 679 302 : >>> Target Intron 2 >>>> SerIleGlnLeuAlaAspAspIlePheGluMetAsp : 312 74 bp |||:!!:!!:!!..!||| :!!||||||! :!! ++SerLeuGluIleCysAspThrValPheGluSerAsn 678 : ........................agAGCCTTGAAATTTGCGACACAGTATTCGAAAGCAAC : 574 313 : TrpIleAlaSerAspLysGlyThrLysGluAsnLeuIleMetIleMetAsnArgSerLeuVa : 333 |||! ||| !..!:!!.!!||||||:!!!..|||:!:! !|||||| ||||||||| TrpThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLy 573 : TGGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAA : 511 334 : lProIleAspIleSerThrAlaHisIleLeuThrValAsnLeuAspSerPhe : 350 !||||||!!:.!!!!! !||| !:!!!!! !!|||||||||!!:|||||| sProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSerPhe 510 : GCCAATAGAATTCACCGGCGCTTTCGTTTTTCCCGTAAATTTGGAGTCTTTT : 458 vulgar: CbirOr194 189 350 . LHQN01050085.1 1345 457 - 305 M 30 90 G 0 3 M 13 39 S 0 2 5 0 2 I 0 324 3 0 2 S 1 1 M 67 201 5 0 2 I 0 70 3 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 458 1345 305 - . gene_id 1 ; sequence CbirOr194 ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 1212 1345 . - . LHQN01050085.1 exonerate:protein2genome:local exon 1212 1345 . - . insertions 3 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 1210 1211 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 884 1211 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 884 885 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 682 883 . - . LHQN01050085.1 exonerate:protein2genome:local exon 682 883 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 680 681 . - . intron_id 2 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 608 681 . - . intron_id 2 LHQN01050085.1 exonerate:protein2genome:local splice3 608 609 . - . intron_id 1 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 458 607 . - . LHQN01050085.1 exonerate:protein2genome:local exon 458 607 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 458 1345 305 - . alignment_id 1 ; Query CbirOr194 ; Align 1346 190 90 ; Align 1253 220 39 ; Align 883 234 201 ; Align 608 301 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr193 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 311 Query range: 188 -> 352 Target range: 1345 -> 448 189 : AspCysIleIleCysGlyLeuLeuValHisIleCysCysGluIleAspIleLeuLysTyrAr : 209 ||| !:!!.!! !!|||||||||:!!||||||! !|||:!!.!!!!:||||||:!!:!!|| AspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisAr 1345 : GACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCG : 1285 210 : gLeuArgLysSerLeuArgAsnArgThr<->AspPheArgGluCysValArgGlnHisAspS : 229 ||||!:!!..! ! !! !:!!||| ! ..! !:!:!!|||!.! !!!.||| !! gLeuLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrA 1284 : TCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATC : 1222 230 : erIleTyr{Ly} >>>> Target Intron 1 >>>> {s}PheAlaTyrThrIleAsn : 238 !!||||||{||} 328 bp {|}|||||| ! ! !|||||| rgIleTyr{Ly}++ ++{s}PheAlaGluIleIleAsn 1221 : GCATATAC{AA}gt.........................ag{A}TTCGCTGAAATTATAAAC : 867 239 : GluAsnPheArgIleIleLeuAlaIleGlnPheAlaValSerThrLeuValValCysSerAs : 259 ! !!!.|||!!!|||! :!!|||! |||||| !|||!!!|||:!!..!:!!|||! !|| AlaLysPheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThrMetCysPheAs 866 : GCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACAATGTGCTTCAA : 804 260 : nMetTyrGlnIleAlaArgThrSerLeuSerAlaGluTyrIleProLeuMetLeuTyrThrS : 280 |:!:!:!!:!:!:.!!!:!|||!.!:!!! !:!!:!! !:!! !!|||!!:! !!:!! ! nLeuPheArgLeuThrGlnThrLysValTyrSerGlnValLeuAlaLeuIleProPheMetV 803 : CCTCTTTCGACTGACACAGACCAAGGTGTATTCGCAAGTTTTAGCATTGATACCGTTCATGG : 741 281 : erCysMetPheThrGlnIleLeuIleTyrCysTrpTyrGlyAsnGluValLysLeuLys > : 300 ! !!:!!|||.!!||||||!!! !! !||||||||||||||||||..!|||:!!||| alSerValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys++ 740 : TCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGgt. : 679 301 : >>> Target Intron 2 >>>> SerValGlnLeuAlaAsnGluIlePheGluMetAsp : 311 74 bp |||:!!:!!:!!..!:!! !:!!||||||! :!! ++SerLeuGluIleCysAspThrValPheGluSerAsn 678 : ........................agAGCCTTGAAATTTGCGACACAGTATTCGAAAGCAAC : 574 312 : TrpIleThrValAspLysGluValLysGluGlyLeuMetMetIleMetAsnArgSerLeuVa : 332 |||! .!!:!!..!:!!.....!|||:!! !|||:!!! !|||||| ||||||||| TrpThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLy 573 : TGGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAA : 511 333 : lProIleGluPheSerSerAlaHisIlePheThrValAsnLeuAspSerPheValLysIle : 352 !||||||||||||!!!.!!||| !:!!||| !!|||||||||!!:|||||| !!..:!! sProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSerPheLysSerVal 510 : GCCAATAGAATTCACCGGCGCTTTCGTTTTTCCCGTAAATTTGGAGTCTTTTAAAAGTGTT : 449 vulgar: CbirOr193 188 352 . LHQN01050085.1 1345 448 - 311 M 30 90 G 0 3 M 13 39 S 0 2 5 0 2 I 0 324 3 0 2 S 1 1 M 67 201 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 449 1345 311 - . gene_id 1 ; sequence CbirOr193 ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 1212 1345 . - . LHQN01050085.1 exonerate:protein2genome:local exon 1212 1345 . - . insertions 3 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 1210 1211 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 884 1211 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 884 885 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 682 883 . - . LHQN01050085.1 exonerate:protein2genome:local exon 682 883 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 680 681 . - . intron_id 2 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 608 681 . - . intron_id 2 LHQN01050085.1 exonerate:protein2genome:local splice3 608 609 . - . intron_id 1 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 449 607 . - . LHQN01050085.1 exonerate:protein2genome:local exon 449 607 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 449 1345 311 - . alignment_id 1 ; Query CbirOr193 ; Align 1346 189 90 ; Align 1253 219 39 ; Align 883 233 201 ; Align 608 300 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr200CTE Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 206 Query range: 189 -> 300 Target range: 1345 -> 681 190 : AspSerLeuLeuCysGlyPheLeuLeuTyrIleCysCysGlnLeuGluIleLeuArgTyrAr : 210 |||!:!|||!!! !!|||.!.|||:!!:!!|||! !||||||!!!|||||||||!:!:!!|| AspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisAr 1345 : GACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCG : 1285 211 : gLeuSerLysIleIleHisGlyGlnAspIle<->LeuHisAspCysValTyrHisHisAsnA : 230 ||||!.!!..|||! !! !! !::!!!: ! ! ! .!.|||!.!!:!|||||| !!| gLeuLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrA 1284 : TCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATC : 1222 231 : rgIlePhe{Gl} >>>> Target Intron 1 >>>> {u}TyrAlaTyrIleValAsn : 239 |||||!:!{:!} 328 bp {!}!:!||| ! |||:!!||| rgIleTyr{Ly}++ ++{s}PheAlaGluIleIleAsn 1221 : GCATATAC{AA}gt.........................ag{A}TTCGCTGAAATTATAAAC : 867 240 : LysLysPheAlaValIleIleThrIleGlnPheAlaValSerMetLeuValValCysSerAs : 260 !||||||::!:!!! !!:.!!! |||||| !|||!!!! :!!..!:!!|||! !|| AlaLysPheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThrMetCysPheAs 866 : GCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACAATGTGCTTCAA : 804 261 : nLeuTyrArgIleAlaMetAlaAlaAsnTyrMetSerTyrIleProLeuValValTyrThrS : 281 ||||!:!|||:!:.!!..!.!! ! ||| !..! !:!! !!|||:!! !!:!! ! nLeuPheArgLeuThrGlnThrLysValTyrSerGlnValLeuAlaLeuIleProPheMetV 803 : CCTCTTTCGACTGACACAGACCAAGGTGTATTCGCAAGTTTTAGCATTGATACCGTTCATGG : 741 282 : erAlaIleLeuMetGlnIlePheIleTyrCysTrpPheGlyAsnGluValLysLeuLys : 300 !::!:!:!!! ||||||||| !! !||||||!:!|||||||||..!|||:!!||| alSerValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys 740 : TCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG : 682 vulgar: CbirOr200CTE 189 300 . LHQN01050085.1 1345 681 - 206 M 31 93 G 0 3 M 12 36 S 0 2 5 0 2 I 0 324 3 0 2 S 1 1 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 682 1345 206 - . gene_id 1 ; sequence CbirOr200CTE ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 1212 1345 . - . LHQN01050085.1 exonerate:protein2genome:local exon 1212 1345 . - . insertions 3 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 1210 1211 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 884 1211 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 884 885 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 682 883 . - . LHQN01050085.1 exonerate:protein2genome:local exon 682 883 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 682 1345 206 - . alignment_id 1 ; Query CbirOr200CTE ; Align 1346 190 93 ; Align 1250 221 36 ; Align 883 234 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr199 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 176 Query range: 189 -> 300 Target range: 1345 -> 681 190 : GluSerLeuIlePheGlyLeuLeuLeuGlnIleCysGlyGlnLeuGluIleLeuGluHisAr : 210 !!:!:!|||.!! !|||||||||:!!!!.|||! ! !!|||!!!|||||||||:!!||||| AspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisAr 1345 : GACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCG : 1285 211 : gLeuThrLysLeuValHisAsp<->GluGlyIleIleGlyAspCysIleLeuHisHisAsnL : 230 ||||! !!..:!! !! !||| ||| ! ! !.!.||| !!!!|||||| !!! gLeuLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrA 1284 : TCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATC : 1222 231 : euIlePhe{Gl} >>>> Target Intron 1 >>>> {u}TyrAlaTyrLysValAsn : 239 !|||!:!{:!} 328 bp {!}!:!||| ! ! :!!||| rgIleTyr{Ly}++ ++{s}PheAlaGluIleIleAsn 1221 : GCATATAC{AA}gt.........................ag{A}TTCGCTGAAATTATAAAC : 867 240 : AsnMetPheAlaLysIleIleAlaLeuGlnPheAlaValSerMetLeuValValCysSerAs : 260 ! !|||::!! ! !!:||| !|||||| !|||!!!! :!!..!:!!|||! !|| AlaLysPheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThrMetCysPheAs 866 : GCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACAATGTGCTTCAA : 804 261 : nLeuTyrArgLeuAlaMetValThrAspTyrValThrPheIleSerLeuThrThrTyrThrC : 281 ||||!:!||||||.!!..!..!! !! ||| ! ! !!:!!:!!|||! ! !!!:!! ! nLeuPheArgLeuThrGlnThrLysValTyrSerGlnValLeuAlaLeuIleProPheMetV 803 : CCTCTTTCGACTGACACAGACCAAGGTGTATTCGCAAGTTTTAGCATTGATACCGTTCATGG : 741 282 : ysAlaIleLeuThrGlnIlePheIleTyrCysTrpPheGlyAsnGluValLysIleLys : 300 !::!:!:!!!.!!||||||||| !! !||||||!:!|||||||||..!|||:!:||| alSerValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys 740 : TCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG : 682 vulgar: CbirOr199 189 300 . LHQN01050085.1 1345 681 - 176 M 28 84 G 0 3 M 15 45 S 0 2 5 0 2 I 0 324 3 0 2 S 1 1 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 682 1345 176 - . gene_id 1 ; sequence CbirOr199 ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 1212 1345 . - . LHQN01050085.1 exonerate:protein2genome:local exon 1212 1345 . - . insertions 3 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 1210 1211 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 884 1211 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 884 885 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 682 883 . - . LHQN01050085.1 exonerate:protein2genome:local exon 682 883 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 682 1345 176 - . alignment_id 1 ; Query CbirOr199 ; Align 1346 190 84 ; Align 1259 218 45 ; Align 883 234 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr197 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 218 Query range: 186 -> 308 Target range: 1345 -> 648 187 : AspSerLeuIleSerGlyLeuLeuGlnGlnIleCysCysGlnIleGluIleLeuGlnTyrAr : 207 |||!:!|||.!!|||||||||||| !!.|||! !||||||.!!||||||||||||:!!|| AspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisAr 1345 : GACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCG : 1285 208 : gLeuThrLysValSerHisAsp<->GlyHisValLeuAsnAsnCysValArgHisHisAspA : 227 ||||! !!..:!!!.!! !||| ! !:!! ! !!!..!.|||!.! !|||||| !!| gLeuLysSerIleLysProAspArgGluTyrSerAlaLysGlnCysAlaPheHisHisTyrA 1284 : TCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATTATC : 1222 228 : rgIleTyr{Ly} >>>> Target Intron 1 >>>> {s}TyrAlaGlnThrValAsn : 236 ||||||||{||} 328 bp {|}!:!|||:!!! !:!!||| rgIleTyr{Ly}++ ++{s}PheAlaGluIleIleAsn 1221 : GCATATAC{AA}gt.........................ag{A}TTCGCTGAAATTATAAAC : 867 237 : MetAsnPheThrLysIleIleAlaLeuGlnPheValValSerMetLeuValValCysAlaAs : 257 !!!.|||!:!! ! !!:||| !||||||:!!|||!!!! :!!..!:!!||| !|| AlaLysPheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThrMetCysPheAs 866 : GCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACAATGTGCTTCAA : 804 258 : nLeuTyrLysLeuValMetAlaThrIleLeuAlaAspPheIleIleLeuMetLeuTyrThrA : 278 ||||!:!::!|||..!..!.!!! !:!:! !:!!.!. !!:!! !|||!!:! !!:!! !! nLeuPheArgLeuThrGlnThrLysValTyrSerGlnValLeuAlaLeuIleProPheMetV 803 : CCTCTTTCGACTGACACAGACCAAGGTGTATTCGCAAGTTTTAGCATTGATACCGTTCATGG : 741 279 : laCysMetLeuAlaGlnIlePheLeuTyrCysTrpPheGlyAsnGluLeuLysLeuLysSer : 298 .! !!:!!!!!||||||||||||! !! !||||||!:!||||||||| !|||:!!||| ! alSerValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLysVal 740 : TCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGGTA : 681 299 : LysSerLeuSerAsnSerIleTyrAsnIle : 308 :::..!! !!!!:!!! !:::::::::||| ArgAspGlnThrAspPheLeuPheSerIle 680 : CGTGATCAAACAGACTTCttattctcaatt : 649 vulgar: CbirOr197 186 308 . LHQN01050085.1 1345 648 - 218 M 28 84 G 0 3 M 15 45 S 0 2 5 0 2 I 0 324 3 0 2 S 1 1 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 649 1345 218 - . gene_id 1 ; sequence CbirOr197 ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 1212 1345 . - . LHQN01050085.1 exonerate:protein2genome:local exon 1212 1345 . - . insertions 3 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 1210 1211 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 884 1211 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 884 885 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 649 883 . - . LHQN01050085.1 exonerate:protein2genome:local exon 649 883 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 649 1345 218 - . alignment_id 1 ; Query CbirOr197 ; Align 1346 187 84 ; Align 1259 215 45 ; Align 883 231 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr191 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 188 Query range: 191 -> 304 Target range: 1345 -> 681 192 : AspSerMetIleCysGlyPheIleLeuHisValCysCysGlnPheGluIleLeuGluCysAr : 212 |||!:!:!:.!! !!|||.!.:!::!!|||:!!! !||||||||||||||||||:!! !|| AspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisAr 1345 : GACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCG : 1285 213 : gLeuLysLysValAlaLeuAspGlnLysAsnLeuArgMetGlyAspCysValHisGlnHisA : 233 |||||||!..:!! !! !||| !:!.!.! ! ! ! !.!.|||!.! !!!.||| gLeuLysSerIleLysProAsp---ArgGluTyrSerAlaLysGlnCysAlaPheHisHisT 1284 : TCTGAAGAGCATTAAACCTGAC---AGGGAGTACTCTGCGAAACAGTGTGCTTTTCATCATT : 1225 234 : spCysIlePhe{Ly} >>>> Target Intron 1 >>>> {s}PheAlaPheMetIle : 242 !! !!|||!:!{||} 328 bp {|}|||||| !!:||| yrArgIleTyr{Ly}++ ++{s}PheAlaGluIleIle 1224 : ATCGCATATAC{AA}gt.........................ag{A}TTCGCTGAAATTATA : 870 243 : AsnGluHisPheLysProIleIleThrIleGlnPheIleValSerMetLeuValValCysSe : 263 |||! ! ! |||!.. !! !!:.!!! ||||||:!:|||!!!! :!!..!:!!|||! AsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThrMetCysPh 869 : AACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACAATGTGCTT : 807 264 : rAsnLeuTyrGlnLeuAlaLysValThrLeuAsnAlaGluSerLeuThrLeuMetLeuTyrT : 284 !||||||!:!!:!|||.!!:!!..!! !:!! !!:!!:!! !|||.!!|||!!:! !!:!! eAsnLeuPheArgLeuThrGlnThrLysValTyrSerGlnValLeuAlaLeuIleProPheM 806 : CAACCTCTTTCGACTGACACAGACCAAGGTGTATTCGCAAGTTTTAGCATTGATACCGTTCA : 744 285 : hrThrSerMetLeuThrGlnIleLeuIleTyrCysTrpPheGlyAsnGluValLysIleLys : 304 !..!|||:!!!!!.!!||||||!!! !! !||||||!:!|||||||||..!|||:!:||| etValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys 743 : TGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG : 684 vulgar: CbirOr191 191 304 . LHQN01050085.1 1345 681 - 188 M 28 84 G 1 0 M 16 48 S 0 2 5 0 2 I 0 324 3 0 2 S 1 1 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 682 1345 188 - . gene_id 1 ; sequence CbirOr191 ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 1212 1345 . - . LHQN01050085.1 exonerate:protein2genome:local exon 1212 1345 . - . insertions 0 ; deletions 1 LHQN01050085.1 exonerate:protein2genome:local splice5 1210 1211 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 884 1211 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 884 885 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 682 883 . - . LHQN01050085.1 exonerate:protein2genome:local exon 682 883 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 682 1345 188 - . alignment_id 1 ; Query CbirOr191 ; Align 1346 192 84 ; Align 1262 221 48 ; Align 883 238 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr198 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 303 -> 370 Target range: 607 -> 245 304 : SerLeuHisLeuAlaAsnSerIleTyrAspLeuGluTrpArgThrLeuThrValSerThrLysL : 325 ||||||.!.:!!..!:!!!!!:!!!:!!!: !.!.|||! !.!!|||!:! !|||||||||| SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSerThrLysL 607 : AGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAGCACCAAAA : 544 326 : ysAlaLeuLeuLeuIleMetAsnArgAlaLysIleProIleGluPheLysSerIleSerIleLe : 346 ||.!!|||||| !|||||| |||:!! !! ||||||||||||! .!! !! !:!!!! ysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheThrGlyAlaPheValPh 543 : AGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTT : 481 347 : uThrMetAsnArgAspSerTyrLeuAsn >>>> Target Intron 1 >>>> LeuLeuL : 358 ! !!:!:||| !!!:|||!:! !!:! 161 bp |||:!!| eProValAsnLeuGluSerPheLysSer++ ++LeuValL 480 : TCCCGTAAATTTGGAGTCTTTTAAAAGTgt.........................agTTGGTGA : 284 359 : ysLeuSerTyrSerAlaPheAsnValLeuTyrHisThr : 370 || !|||||||||!.!|||||||||:!! ! !!.||| ysThrSerTyrSerValPheAsnValIleGlnGlnThr 283 : AAACTTCCTATTCGGTATTCAACGTAATCCAGCAAACG : 246 vulgar: CbirOr198 303 370 . LHQN01050085.1 607 245 - 115 M 52 156 5 0 2 I 0 157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 246 607 115 - . gene_id 1 ; sequence CbirOr198 ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 452 607 . - . LHQN01050085.1 exonerate:protein2genome:local exon 452 607 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 450 451 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 291 451 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 291 292 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 246 290 . - . LHQN01050085.1 exonerate:protein2genome:local exon 246 290 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 246 607 115 - . alignment_id 1 ; Query CbirOr198 ; Align 608 304 156 ; Align 291 356 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr196 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 298 -> 350 Target range: 613 -> 457 299 : SerLysSerLeuGluLeuThrAspArgIlePheGlnThrAspTrpProMetLeuAsnSerSerI : 320 ||| !!|||||||||:!! !|||! !:!!|||:!!!:!:!!||| !! |||!:!..!|||! Ser***SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSerT 613 : TCGTAGAGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAGCA : 550 321 : leLysAsnSerLeuLeuIleIleMetLysArgAlaIleIleProIleGluPheThrThrAlaHi : 341 !|||!!.!!!||||||! |||||| !|||:!!:!:! ||||||||||||||| !||| hrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheThrGlyAlaPh 549 : CCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCACCGGCGCTTT : 487 342 : sIleIleSerLeuAsnLeuGluSerPhe : 350 !:!!.!! !!:!!||||||||||||||| eValPheProValAsnLeuGluSerPhe 486 : CGTTTTTCCCGTAAATTTGGAGTCTTTT : 458 vulgar: CbirOr196 298 350 . LHQN01050085.1 613 457 - 130 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 458 613 130 - . gene_id 1 ; sequence CbirOr196 ; gene_orientation . LHQN01050085.1 exonerate:protein2genome:local cds 458 613 . - . LHQN01050085.1 exonerate:protein2genome:local exon 458 613 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 458 613 130 - . alignment_id 1 ; Query CbirOr196 ; Align 614 299 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr223 Target: KQ414573.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold16, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 143 Query range: 151 -> 210 Target range: 648837 -> 648660 152 : SerThrAsnArgProLeuLeuHisArgValGluTyrTyrIleAspMetAspLysTyrT : 171 |||!:!:!!|||||||||:!! !|||||||||:!!!:!:!:|||:!!|||||||||| SerSerAspArgProLeuValPheArgValGluHisPheValAspValAspLysTyrT 648837 : TCCAGCGATCGACCGTTGGTATTTCGAGTTGAACATTTCGTGGATGTGGACAAATACT : 648780 172 : yrPheProIleLeuIleHisGlyTyrLeuThrAlaIleValCysIleSerIleAlaIl : 190 ||!:! !!:!!|||:!:|||..!|||!!! !.!!|||!.!! !! !:!!|||!.!:! yrTyrThrLeuLeuValHisSerTyrPheGlyThrIleAlaPheThrAlaIleValVa 648779 : ACTATACCCTTTTAGTGCATTCATACTTTGGTACTATAGCATTTACTGCGATTGTTGT : 648723 191 : eAlaThrAspThrMetTyrValIleMetValGlnHisValCysGlyLeuPheThrIle : 209 !:!!! !:!!:!!!!: !.!:!: |||! !|||! !|||||||||! ! !||| lSerIleAsnSerIleIleAlaValTyrValLeuHisGluCysGlyLeuCysGluIle 648722 : CTCTATCAACTCGATAATAGCTGTGTACGTCCTACACGAATGCGGACTTTGTGAAATC : 648666 210 : Ile : 210 :!! Leu 648665 : TTA : 648661 vulgar: CbirOr223 151 210 . KQ414573.1 648837 648660 - 143 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414573.1 exonerate:protein2genome:local gene 648661 648837 143 - . gene_id 1 ; sequence CbirOr223 ; gene_orientation . KQ414573.1 exonerate:protein2genome:local cds 648661 648837 . - . KQ414573.1 exonerate:protein2genome:local exon 648661 648837 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local similarity 648661 648837 143 - . alignment_id 1 ; Query CbirOr223 ; Align 648838 152 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr217PSE Target: KQ414573.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold16, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 319 -> 370 Target range: 629001 -> 628848 320 : ArgValTyrThrSerThrTyrArgGlyGluTrpTyrGluSerSerCysLysSerLysL : 339 ::::::||| !.!|||:!!|||||||||||||||! !!!.!!!!:!| LysIleTyrIlePheArgThrAsnGlyLysTrpTyrGluSerSerTyrAsnCysArgL 629001 : aaaatatatattttcaggACAAATGGCAAATGGTATGAATCGTCATATAATTGCAGAA : 628944 340 : ysLeuLeuAsnMetValMetLeuArgSerIleSerProCysThrLeuThrValGlyLy : 358 ||||||||! !!::!!:!:! !!:!|||:!!!!! !! !! !||||||!.! !!|| ysLeuLeuIleIleMetLeuSerLysSerLeuThrSerLeuLysLeuThrAlaCysLy 628943 : AACTTCTGATAATAATGTTATCAAAAAGCTTAACATCTCTTAAATTAACGGCTTGCAA : 628887 359 : sIleMetIleLeuSerLeuProSerPheSerAlaVal : 370 |||| ! |||:::||| ||||||!:!|||||| sIleTyrThrLeuAsnLeuGluSerPheAsnAlaVal 628886 : AATCTACACattaaatttagaaagttTCAATGCGGTA : 628849 vulgar: CbirOr217PSE 319 370 . KQ414573.1 629001 628848 - 101 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414573.1 exonerate:protein2genome:local gene 628849 629001 101 - . gene_id 1 ; sequence CbirOr217PSE ; gene_orientation . KQ414573.1 exonerate:protein2genome:local cds 628849 629001 . - . KQ414573.1 exonerate:protein2genome:local exon 628849 629001 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local similarity 628849 629001 101 - . alignment_id 1 ; Query CbirOr217PSE ; Align 629002 320 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr216CTE Target: KQ414573.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold16, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 136 -> 215 Target range: 648894 -> 648657 137 : TyrSerThrMetProTyrValMetSerGlyLeuTyrMetPheMetProThrAsnGluT : 156 !:!:!!.!!||||||! :!!:!!!:!!.! ! !!! !!. !!:!|||! !: PheAlaAlaMetProLeuLeuLeuAsnAlaAlaAspThrLeuGlyPheSerAsnValS 648894 : TTTGCGGCAATGCCATTACTGCTGAATGCAGCTGACACTTTAGGATTCAGCAATGTGT : 648837 157 : hrTyrGluIleLysPheValPheArgValGluHisValValAspMetGluLysTyrPh : 175 !! !!!: ! !!!.|||||||||||||||||| !!||||||:!!!!:||||||!: erSerAspArgProLeuValPheArgValGluHisPheValAspValAspLysTyrTy 648836 : CCAGCGATCGACCGTTGGTATTTCGAGTTGAACATTTCGTGGATGTGGACAAATACTA : 648780 176 : eAsnLeuLeuMetLeuPheAlaIleIleSerValPheTyrIleLeuSerIleValIle : 194 ! !! !|||:!::!! !:!! !.!!.!!..!.!. .!! !:!!||||||:!! rTyrThrLeuLeuValHisSerTyrPheGlyThrIleAlaPheThrAlaIleValVal 648779 : CTATACCCTTTTAGTGCATTCATACTTTGGTACTATAGCATTTACTGCGATTGTTGTC : 648723 195 : AlaValAspCysIlePheValLeuCysIleGlnHisIleCysAlaLeuPheGluSerI : 214 :!!:!!:!!! |||.!.!.!:!!! !:!!! !||| !|||!.!|||! !|||! !: SerIleAsnSerIleIleAlaValTyrValLeuHisGluCysGlyLeuCysGluIleL 648722 : TCTATCAACTCGATAATAGCTGTGTACGTCCTACACGAATGCGGACTTTGTGAAATCT : 648663 215 : leArg : 215 !!||| euArg 648662 : TAAGG : 648658 vulgar: CbirOr216CTE 136 215 . KQ414573.1 648894 648657 - 114 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414573.1 exonerate:protein2genome:local gene 648658 648894 114 - . gene_id 1 ; sequence CbirOr216CTE ; gene_orientation . KQ414573.1 exonerate:protein2genome:local cds 648658 648894 . - . KQ414573.1 exonerate:protein2genome:local exon 648658 648894 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local similarity 648658 648894 114 - . alignment_id 1 ; Query CbirOr216CTE ; Align 648895 137 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr215 Target: KQ414573.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold16, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 136 -> 215 Target range: 648894 -> 648657 137 : TyrSerThrMetProIleValValSerValIleTyrLysValLeuProAlaAsnGluT : 156 !:!:!!.!!||||||:!!:!!:!!!:!!.! ! !!! :!! ! !::!|||! !: PheAlaAlaMetProLeuLeuLeuAsnAlaAlaAspThrLeuGlyPheSerAsnValS 648894 : TTTGCGGCAATGCCATTACTGCTGAATGCAGCTGACACTTTAGGATTCAGCAATGTGT : 648837 157 : hrTyrGluAlaGlyPheLeuPheArgLeuGluHisValIleAspValGluLysTyrPh : 175 !! !!!: ! !!!.:!!||||||:!!|||||| !!:!:||||||!!:||||||!: erSerAspArgProLeuValPheArgValGluHisPheValAspValAspLysTyrTy 648836 : CCAGCGATCGACCGTTGGTATTTCGAGTTGAACATTTCGTGGATGTGGACAAATACTA : 648780 176 : eThrLeuLeuMetLeuTyrAlaPheIleSerValPheTyrIleLeuSerIleValIle : 194 ! ! !|||:!::!!:!!:!!!:!.!!.!!..!.!. .!! !:!!||||||:!! rTyrThrLeuLeuValHisSerTyrPheGlyThrIleAlaPheThrAlaIleValVal 648779 : CTATACCCTTTTAGTGCATTCATACTTTGGTACTATAGCATTTACTGCGATTGTTGTC : 648723 195 : AlaValAspCysIlePheValLeuCysIleGlnHisThrCysAlaLeuPheGluGlyI : 214 :!!:!!:!!! |||.!.!.!:!!! !:!!! !||| !|||!.!|||! !||| !: SerIleAsnSerIleIleAlaValTyrValLeuHisGluCysGlyLeuCysGluIleL 648722 : TCTATCAACTCGATAATAGCTGTGTACGTCCTACACGAATGCGGACTTTGTGAAATCT : 648663 215 : leArg : 215 !!||| euArg 648662 : TAAGG : 648658 vulgar: CbirOr215 136 215 . KQ414573.1 648894 648657 - 120 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414573.1 exonerate:protein2genome:local gene 648658 648894 120 - . gene_id 1 ; sequence CbirOr215 ; gene_orientation . KQ414573.1 exonerate:protein2genome:local cds 648658 648894 . - . KQ414573.1 exonerate:protein2genome:local exon 648658 648894 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local similarity 648658 648894 120 - . alignment_id 1 ; Query CbirOr215 ; Align 648895 137 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr213 Target: KQ414573.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold16, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 133 -> 219 Target range: 648915 -> 648657 134 : LeuTyrAlaValTrpIleSerPheSerMetMetProIleValIleSerArgLeuTyrT : 153 |||!:!!.!:!! ! ! !!|||:!! ||||||:!!:!!:!:!:! ! ! !!| LeuPheGlyLeuIleThrProPheAlaAlaMetProLeuLeuLeuAsnAlaAlaAspT 648915 : TTATTCGGATTAATAACACCGTTTGCGGCAATGCCATTACTGCTGAATGCAGCTGACA : 648858 154 : hrPheLeuProThrAsnGluThrPheGluThrLysTyrLeuTyrArgValGluHisVa : 172 ||!!. ! !!:!|||! !:!! !!!: ! !! :!!!:!|||||||||||| ! hrLeuGlyPheSerAsnValSerSerAspArgProLeuValPheArgValGluHisPh 648857 : CTTTAGGATTCAGCAATGTGTCCAGCGATCGACCGTTGGTATTTCGAGTTGAACATTT : 648801 173 : lIleAspValGluLysTyrPheThrLeuLeuMetLeuLeuAlaIleIleGlyIlePhe : 191 !:!:||||||!!:||||||!:! ! !|||:!::!!! !:!! !.!!|||! !.!. eValAspValAspLysTyrTyrTyrThrLeuLeuValHisSerTyrPheGlyThrIle 648800 : CGTGGATGTGGACAAATACTACTATACCCTTTTAGTGCATTCATACTTTGGTACTATA : 648744 192 : TyrIleValSerIleAlaIleAlaValAspSerValPheValLeuCysMetGlnHisA : 211 .!!..!:!!|||!.!:!!:!!:!!:!!|||:!!.!.!.!:!!! !:!:! !|||. AlaPheThrAlaIleValValSerIleAsnSerIleIleAlaValTyrValLeuHisG 648743 : GCATTTACTGCGATTGTTGTCTCTATCAACTCGATAATAGCTGTGTACGTCCTACACG : 648684 212 : snThrAlaLeuPheGluGluValArg : 219 !. !!.!|||! !||| :!!||| luCysGlyLeuCysGluIleLeuArg 648683 : AATGCGGACTTTGTGAAATCTTAAGG : 648658 vulgar: CbirOr213 133 219 . KQ414573.1 648915 648657 - 116 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414573.1 exonerate:protein2genome:local gene 648658 648915 116 - . gene_id 1 ; sequence CbirOr213 ; gene_orientation . KQ414573.1 exonerate:protein2genome:local cds 648658 648915 . - . KQ414573.1 exonerate:protein2genome:local exon 648658 648915 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local similarity 648658 648915 116 - . alignment_id 1 ; Query CbirOr213 ; Align 648916 134 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr218 Target: KQ414573.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold16, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 335 -> 396 Target range: 629001 -> 628818 336 : LysIlePheGluSerAlaTyrAsnThrLysTrpTyrAsnMetSerIleAlaThrArgL : 355 ||||||::: ||| !|||||||||.!. !||| ! ! !|||| LysIleTyrIlePheArgThrAsnGlyLysTrpTyrGluSerSerTyrAsnCysArgL 629001 : aaaatatatattttcaggACAAATGGCAAATGGTATGAATCGTCATATAATTGCAGAA : 628944 356 : ysLeuLeuIleIleIleMetMetLysSerArgThrProLeuValIleThrAlaGlyLy : 374 ||||||||||||||!!::!: |||||| !||| !!||| !:!!|||||| !!|| ysLeuLeuIleIleMetLeuSerLysSerLeuThrSerLeuLysLeuThrAlaCysLy 628943 : AACTTCTGATAATAATGTTATCAAAAAGCTTAACATCTCTTAAATTAACGGCTTGCAA : 628887 375 : sIleMetIleMetSerTyrValThrPheAsnAlaValLeuArgAlaSerSerSerTyr : 393 |||| ! :::::: :::|||||||||||| ||| sIleTyrThrLeuAsnLeuGluSerPheAsnAlaValArgPhePhePheHisPheTyr 628886 : AATCTACACattaaatttagaaagttTCAATGCGGTAagatttttcttccacttttat : 628830 394 : PheMetLeu : 396 ::: ||| TyrSerLeu 628829 : tactcgtta : 628819 vulgar: CbirOr218 335 396 . KQ414573.1 629001 628818 - 108 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414573.1 exonerate:protein2genome:local gene 628819 629001 108 - . gene_id 1 ; sequence CbirOr218 ; gene_orientation . KQ414573.1 exonerate:protein2genome:local cds 628819 629001 . - . KQ414573.1 exonerate:protein2genome:local exon 628819 629001 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local similarity 628819 629001 108 - . alignment_id 1 ; Query CbirOr218 ; Align 629002 336 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr221 Target: KQ414573.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold16, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 483 Query range: 49 -> 217 Target range: 650681 -> 648660 50 : GlyGlyMetIleThrAlaTrpPheAlaGlyAspIleAspAlaPheMetGluSerSerS : 69 |||||||||:!!|||||| ! !! !||||||:!!!!::!!|||:!:||||||! !: GlyGlyMetValThrAlaMetThrAspGlyAspValGluSerPheLeuGluSerPheA 650681 : GGCGGAATGGTAACTGCTATGACCGATGGTGACGTCGAATCGTTTTTAGAAAGTTTTG : 650624 70 : erProPheValIleSerLeuMetCysIleCysLysHisIleAsnTyrThrTyrAsnHi : 88 !!|||.!!:!!|||||||||||||||:!!! !|||:::||||||::: ||||||:: laProLeuIleIleSerLeuMetCysLeuSerLysTyrIleAsnPhePheTyrAsnTy 650623 : CACCCCTCATCATTAGTCTAATGTGTCTCTCTAagtatatcaattttttttacaatta : 650567 89 : sGlyGln >>>> Target Intron 1 >>>> MetArgGlnLeuThrValThrM : 98 : ::: 60 bp |||||| ! ||| ! !! !| rLysLys++ ++MetArgTyrLeuLeuAsnIleM 650566 : taaaaaggt.........................agATGAGGTATTTATTGAATATAA : 650477 99 : etAlaAspAspTrpAsnIleTyrSerLysPheSerHisGluPheAspIleLeuCysAr : 117 || !!!:||||||!..||||||!.!||| ! !.!:!!|||||||||:!!||||||.. etGlnGluAspTrpArgIleTyrLysLysValLysAsnGluPheAspValLeuCysGl 650476 : TGCAAGAGGATTGGAGGATATATAAGAAAGTAAAGAACGAGTTTGACGTTCTTTGTGA : 650420 118 : gSerTyrAlaIleGlyLysArgValThrIleAlaTyrAla{V} >>>> Target I : 131 !..!||||||:!!||||||!:!:!!|||! !::!!:!|||{!} 1457 uGlnTyrAlaValGlyLysLysLeuThrThrSerPheAla{A}++ 650419 : ACAATATGCAGTAGGAAAGAAGCTTACTACTAGTTTTGCA{G}gt............. : 650375 132 : ntron 2 >>>> {al}SerLeuTyrGlySerMetThrProPheLeuValValProV : 145 bp {.!}! !|||!:!|||! !!!:||||||||| !!.!:!!|||: ++{la}PheLeuPheGlyLeuIleThrProPheAlaAlaMetProL 650374 : ............ag{CT}TTTTTATTCGGATTAATAACACCGTTTGCGGCAATGCCAT : 648879 146 : alIleLeuAsnThrAlaSerTyrMetGlyLeuTyrAsnIleSerGluGlyArgProLe : 164 !!:!:||||||.!!|||..! !:!:|||!!! !|||:!:|||...! !|||||||| euLeuLeuAsnAlaAlaAspThrLeuGlyPheSerAsnValSerSerAspArgProLe 648878 : TACTGCTGAATGCAGCTGACACTTTAGGATTCAGCAATGTGTCCAGCGATCGACCGTT : 648822 165 : uMetPheArgThrGluTyrPheLeuAspSerGluLysTyrTyrTyrProLeuLeuVal : 183 |:!:||||||..!|||:!!|||:!!||| !!!:|||||||||||| !!||||||||| uValPheArgValGluHisPheValAspValAspLysTyrTyrTyrThrLeuLeuVal 648821 : GGTATTTCGAGTTGAACATTTCGTGGATGTGGACAAATACTACTATACCCTTTTAGTG : 648765 184 : HisSerTyrIleGlyThrLeuGlyPheValThrIleValValAlaIleAspSerMetL : 203 |||||||||.!!||||||:!!!.!|||..!.!!|||||||||:!!|||:!!|||!!:: HisSerTyrPheGlyThrIleAlaPheThrAlaIleValValSerIleAsnSerIleI 648764 : CATTCATACTTTGGTACTATAGCATTTACTGCGATTGTTGTCTCTATCAACTCGATAA : 648705 204 : euValPheHisIleGlnHisGluCysGlyMetCysGluIleLeu : 217 !!!.! ! :!!:!!! !||||||||||||:!:|||||||||||| leAlaValTyrValLeuHisGluCysGlyLeuCysGluIleLeu 648704 : TAGCTGTGTACGTCCTACACGAATGCGGACTTTGTGAAATCTTA : 648661 vulgar: CbirOr221 49 217 . KQ414573.1 650681 648660 - 483 M 41 123 5 0 2 I 0 56 3 0 2 M 40 120 S 0 1 5 0 2 I 0 1453 3 0 2 S 1 2 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414573.1 exonerate:protein2genome:local gene 648661 650681 483 - . gene_id 1 ; sequence CbirOr221 ; gene_orientation + KQ414573.1 exonerate:protein2genome:local cds 650559 650681 . - . KQ414573.1 exonerate:protein2genome:local exon 650559 650681 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local splice5 650557 650558 . - . intron_id 1 ; splice_site "gT" KQ414573.1 exonerate:protein2genome:local intron 650499 650558 . - . intron_id 1 KQ414573.1 exonerate:protein2genome:local splice3 650499 650500 . - . intron_id 0 ; splice_site "AG" KQ414573.1 exonerate:protein2genome:local cds 650378 650498 . - . KQ414573.1 exonerate:protein2genome:local exon 650378 650498 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local splice5 650376 650377 . - . intron_id 2 ; splice_site "GT" KQ414573.1 exonerate:protein2genome:local intron 648921 650377 . - . intron_id 2 KQ414573.1 exonerate:protein2genome:local splice3 648921 648922 . - . intron_id 1 ; splice_site "AG" KQ414573.1 exonerate:protein2genome:local cds 648661 648920 . - . KQ414573.1 exonerate:protein2genome:local exon 648661 648920 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local similarity 648661 650681 483 - . alignment_id 1 ; Query CbirOr221 ; Align 650682 50 123 ; Align 650499 91 120 ; Align 648919 132 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr221 Target: KQ414573.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold16, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 219 Query range: 258 -> 334 Target range: 640057 -> 639748 259 : GluTyrAlaArgArgIleGluIleAlaAsnThrThrSerTyrPhePheGlnLeuGlyP : 278 ..!!:!|||!.!! !:!!||| !||||||||||||||||||!!.||||||||||||| ArgPheAlaAsnLeuLeuGluGluAlaAsnThrThrSerTyrLeuPheGlnLeuGlyP 640057 : aGATTTGCTAATCTACTTGAGGAAGCAAATACCACGTCTTATTTGTTCCAGTTGGGGT : 640000 279 : heAsnMetMetGlyMetThrPheThrIlePheGln >>>> Target Intron 1 : 290 ||||||||!!: !!:!:!:!|||||| |||||| 81 bp heAsnMetIleCysValSerPheThrGlnPheGln++ 639999 : TTAACATGATTTGCGTAAGCTTCACACAGTTTCAGgt..................... : 639962 291 : >>>> AlaValValLysLeuSerAspProLysGluAlaLeuArgPheAlaSerPheT : 307 .!!|||:!!!!.|||..!||| !! :!!|||||||||!:!!.!||| !!| ++ThrValIleAsnLeuGlnAspThrProLysAlaLeuArgTyrValSerValT 639961 : ....agACGGTAATAAATTTACAAGATACACCCAAGGCTCTCAGATATGTTTCAGTCA : 639832 308 : hrIleCysLeuPheSerValLeuPheLeuGluSerTrpProGlyGlnGlnLeuSerAs : 326 |||||||||||!!.!!!! !|||!!.!!!! !|||||||||||||||!:!|||||||| hrIleCysLeuLeuCysAspLeuLeuPheValSerTrpProGlyGlnArgLeuSerAs 639831 : CGATTTGCTTGTTATGCGACCTTTTGTTTGTAAGCTGGCCAGGACAACGATTGTCCGA : 639775 327 : pTyrThrAspLysIlePheAlaTyr : 334 |||||||!!::::||||||! !||| pTyrThrGluArgIlePheGluTyr 639774 : TTATACTGAACGCATCTTCGAATAT : 639749 vulgar: CbirOr221 258 334 . KQ414573.1 640057 639748 - 219 M 31 93 5 0 2 I 0 77 3 0 2 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414573.1 exonerate:protein2genome:local gene 639749 640057 219 - . gene_id 2 ; sequence CbirOr221 ; gene_orientation + KQ414573.1 exonerate:protein2genome:local cds 639965 640057 . - . KQ414573.1 exonerate:protein2genome:local exon 639965 640057 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local splice5 639963 639964 . - . intron_id 1 ; splice_site "GT" KQ414573.1 exonerate:protein2genome:local intron 639884 639964 . - . intron_id 1 KQ414573.1 exonerate:protein2genome:local splice3 639884 639885 . - . intron_id 0 ; splice_site "AG" KQ414573.1 exonerate:protein2genome:local cds 639749 639883 . - . KQ414573.1 exonerate:protein2genome:local exon 639749 639883 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local similarity 639749 640057 219 - . alignment_id 2 ; Query CbirOr221 ; Align 640058 259 93 ; Align 639884 290 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr221 Target: KQ414573.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold16, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 180 Query range: 329 -> 395 Target range: 629001 -> 628481 330 : LysIlePheAlaTyrIleThrGlyGlyArgTrpTyrAlaPheSerLeuAsnValArgL : 349 ||||||::: ::: |||..!|||!:!||||||! !! |||! !||| !|||| LysIleTyrIlePheArgThrAsnGlyLysTrpTyrGluSerSerTyrAsnCysArgL 629001 : aaaatatatattttcaggACAAATGGCAAATGGTATGAATCGTCATATAATTGCAGAA : 628944 350 : ysValIleSerIleMetLeuLeuArgSerTyrValProIleArgIleThrAlaGlyLy : 368 ||:!!:!:! !|||||||||! !!:!|||! ..! !!:!!!:!:!!|||||| !!|| ysLeuLeuIleIleMetLeuSerLysSerLeuThrSerLeuLysLeuThrAlaCysLy 628943 : AACTTCTGATAATAATGTTATCAAAAAGCTTAACATCTCTTAAATTAACGGCTTGCAA : 628887 369 : sLeuTyrThrLeuAsnLeuGluAsnPheSerSer >>>> Target Intron 1 > : 380 |:!!||||||||||||||||||:::|||!:!:!! 322 bp sIleTyrThrLeuAsnLeuGluSerPheAsnAla++ 628886 : AATCTACACattaaatttagaaagttTCAATGCGgt...................... : 628849 381 : >>> ValValArgThrSerPheSerTyrPheThrValLeuCysSerMetGln : 395 ||||||!:!||||||||||||||| !! !||||||||||||:!:||| ++ValValGlnThrSerPheSerTyrThrMetValLeuCysSerLeuGln 628848 : ...agGTTGTACAAACATCATTCTCTTACACCATGGTTTTATGCTCTCTTCAA : 628482 vulgar: CbirOr221 329 395 . KQ414573.1 629001 628481 - 180 M 50 150 5 0 2 I 0 318 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414573.1 exonerate:protein2genome:local gene 628482 629001 180 - . gene_id 3 ; sequence CbirOr221 ; gene_orientation + KQ414573.1 exonerate:protein2genome:local cds 628852 629001 . - . KQ414573.1 exonerate:protein2genome:local exon 628852 629001 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local splice5 628850 628851 . - . intron_id 1 ; splice_site "GT" KQ414573.1 exonerate:protein2genome:local intron 628530 628851 . - . intron_id 1 KQ414573.1 exonerate:protein2genome:local splice3 628530 628531 . - . intron_id 0 ; splice_site "AG" KQ414573.1 exonerate:protein2genome:local cds 628482 628529 . - . KQ414573.1 exonerate:protein2genome:local exon 628482 628529 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local similarity 628482 629001 180 - . alignment_id 3 ; Query CbirOr221 ; Align 629002 330 150 ; Align 628530 380 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr224PSE(S) Target: KQ414601.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold45, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 314 -> 373 Target range: 1068366 -> 1068189 315 : SerLeuGlnIleArgAspArgIleTyrAsnSerSerTrpTyrAsnValSerAlaLy : 333 ||| !:!!:!:! !!!: ! !|||:!!!!!..!||| ! .!.:!!|||!.!:: SerThrLysValThrGluAlaTyrTyrAspThrGluTrpGlnGluLeuSerValAr 1068366 : tCGACGAAAGTGACCGAAGCGTACTATGATACCGAGTGGCAAGAATTATCGGTCCG : 1068312 334 : sSerArgGluLeuValMetMetValMetMetLysSerLeuArgProSerPheIleS : 352 :!:!!:!:!!|||:!!:!::!:!.!||| ....!!! !||| !!! !!:!:!!! gAsnGlnLysLeuLeuLeuLeuAlaMetArgSerGlyArgArgThrLeuTyrLeuT 1068311 : TAATCAAAAGCTGTTGCTTCTTGCCATGCGTTCTGGACGAAGAACGTTATACCTTA : 1068255 353 : erAlaGlyLysIleTyrIlePheSerLeuLysSerPheIleThrValValGlnAla : 370 !!|||||||||:!:|||! !||||||||| ! .!!|||||| !||| ! ... hrAlaGlyLysValTyrAsnPheSerLeuTyrGlyPheIleHisValSerIleThr 1068254 : CAGCTGGAAAAGTGTACAATTTCTCCTTGTACGGTTTTATCCATGTAAGTATTAcg : 1068201 371 : SerIleSer : 373 :::|||::: AsnIleAsn 1068200 : aatattaac : 1068190 vulgar: CbirOr224PSE(S) 314 373 . KQ414601.1 1068366 1068189 - 101 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414601.1 exonerate:protein2genome:local gene 1068190 1068366 101 - . gene_id 1 ; sequence CbirOr224PSE(S) ; gene_orientation . KQ414601.1 exonerate:protein2genome:local cds 1068190 1068366 . - . KQ414601.1 exonerate:protein2genome:local exon 1068190 1068366 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local similarity 1068190 1068366 101 - . alignment_id 1 ; Query CbirOr224PSE(S) ; Align 1068367 315 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr225 Target: KQ414601.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold45, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 323 -> 384 Target range: 1068366 -> 1068183 324 : SerPheGlnIleArgAspArgIleTyrHisSerSerTrpTyrAsnValSerThrLy : 342 ||| :!!:!:! !!!: ! !||| !!!!!..!||| ! .!.:!!|||..!:: SerThrLysValThrGluAlaTyrTyrAspThrGluTrpGlnGluLeuSerValAr 1068366 : tCGACGAAAGTGACCGAAGCGTACTATGATACCGAGTGGCAAGAATTATCGGTCCG : 1068312 343 : sSerGlnLysMetAlaMetIleValMetAlaArgSerArgArgProAlaPhePheS : 361 :!:!||||||:!! !:!::!!!.!||| ! !.!!|||||| !! !!:!.!!! gAsnGlnLysLeuLeuLeuLeuAlaMetArgSerGlyArgArgThrLeuTyrLeuT 1068311 : TAATCAAAAGCTGTTGCTTCTTGCCATGCGTTCTGGACGAAGAACGTTATACCTTA : 1068255 362 : erAlaGlyLysValTyrIlePheSerLeuGluSerPheThrThrIleLeuGlnThr : 379 !!|||||||||||||||! !||||||||| ! .!!|||! ! !:!! ! ||| hrAlaGlyLysValTyrAsnPheSerLeuTyrGlyPheIleHisValSerIleThr 1068254 : CAGCTGGAAAAGTGTACAATTTCTCCTTGTACGGTTTTATCCATGTAAGTATTAcg : 1068201 380 : SerMetSerTyrLeu : 384 ::::::::: ||| AsnIleAsnProLeu 1068200 : aatattaaccctttg : 1068184 vulgar: CbirOr225 323 384 . KQ414601.1 1068366 1068183 - 105 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414601.1 exonerate:protein2genome:local gene 1068184 1068366 105 - . gene_id 1 ; sequence CbirOr225 ; gene_orientation . KQ414601.1 exonerate:protein2genome:local cds 1068184 1068366 . - . KQ414601.1 exonerate:protein2genome:local exon 1068184 1068366 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local similarity 1068184 1068366 105 - . alignment_id 1 ; Query CbirOr225 ; Align 1068367 324 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr228 Target: KQ414601.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold45, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 323 -> 373 Target range: 1068366 -> 1068216 324 : SerLeuGlnMetCysAsnLysIleTyrAsnGlySerTrpTyrGluLeuProIleLy : 342 ||| !:!!:!! !.!. ! !|||:!! !..!||| ! |||||| !!:!!:: SerThrLysValThrGluAlaTyrTyrAspThrGluTrpGlnGluLeuSerValAr 1068366 : tCGACGAAAGTGACCGAAGCGTACTATGATACCGAGTGGCAAGAATTATCGGTCCG : 1068312 343 : sSerGlnLysLeuMetLeuLeuValMetMetLysSerPheArgProCysCysValS : 361 :!:!|||||||||:!!||||||!.!||| ....!! ||| !!! ! !:!!! gAsnGlnLysLeuLeuLeuLeuAlaMetArgSerGlyArgArgThrLeuTyrLeuT 1068311 : TAATCAAAAGCTGTTGCTTCTTGCCATGCGTTCTGGACGAAGAACGTTATACCTTA : 1068255 362 : erAlaGlyLysIleTyrIlePheSerLeuGlnGlyPhe : 373 !!|||||||||:!:|||! !||||||||| ! |||||| hrAlaGlyLysValTyrAsnPheSerLeuTyrGlyPhe 1068254 : CAGCTGGAAAAGTGTACAATTTCTCCTTGTACGGTTTT : 1068217 vulgar: CbirOr228 323 373 . KQ414601.1 1068366 1068216 - 107 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414601.1 exonerate:protein2genome:local gene 1068217 1068366 107 - . gene_id 1 ; sequence CbirOr228 ; gene_orientation . KQ414601.1 exonerate:protein2genome:local cds 1068217 1068366 . - . KQ414601.1 exonerate:protein2genome:local exon 1068217 1068366 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local similarity 1068217 1068366 107 - . alignment_id 1 ; Query CbirOr228 ; Align 1068367 324 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr219 Target: KQ414615.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold33, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 333 -> 400 Target range: 2576854 -> 2577165 334 : SerSerGluGluValHisGluSerAlaTyrAsnThrLysTrpTyrAsnMetProTh : 352 ..!||| ...:!! ! !:!!||||||:::! !:!!|||! !.!.:!!||||| LysSerPheSerIleSerThrAlaAlaTyrSerIleGlnTrpCysGlnLeuProTh 2576855 : aAGAGTTTCAGTATAAGTACAGCTGCATATTCAATACAGTGGTGTCAACTGCCAAC : 2576909 353 : rAsnGlnArgLysLeuLeuValMetIleMetMetArgSerArgLysProSerArgI : 371 | !! !:! ! !:!! !||||||!!::!:||||||!:!!:! !!||| !| rPheLeuLysAspGluValCysMetIleIleLeuArgSerGlnArgSerSerTyrI 2576910 : TTTTCTTAAAGACGAAGTATGCATGATTATACTACGTTCTCAAAGATCTAGCTACA : 2576966 372 : leThrAlaGlyLysLeuValAsnLeuSerTyrValAsnPheSerAla >>>> Ta : 387 ||||||||||||||:!! ! ::: ||||||:::||| leThrAlaGlyLysIleTyrValMetHisLeuGluAsnPheThrAla++ 2576967 : TTACTGCGGGAAAGATATATGTGAtgcatttggaaaatttcaccgcggt....... : 2577016 388 : rget Intron 1 >>>> ValIleArgAlaSerSerSerTyrPheMetLeuLeu : 398 110 bp :!!:!!!!!.!!:!!!!!||||||||||||:!!||| ++IleLeuSerThrAlaCysSerTyrPheMetMetLeu 2577017 : ..................agATACTCAGTACTGCATGTTCATACTTTATGATGCTT : 2577157 399 : ArgSer : 400 !:!||| GlnSer 2577158 : CAAAGC : 2577165 vulgar: CbirOr219 333 400 . KQ414615.1 2576854 2577165 + 111 M 53 159 5 0 2 I 0 106 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414615.1 exonerate:protein2genome:local gene 2576855 2577165 111 + . gene_id 1 ; sequence CbirOr219 ; gene_orientation + KQ414615.1 exonerate:protein2genome:local cds 2576855 2577013 . + . KQ414615.1 exonerate:protein2genome:local exon 2576855 2577013 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2577014 2577015 . + . intron_id 1 ; splice_site "gt" KQ414615.1 exonerate:protein2genome:local intron 2577014 2577123 . + . intron_id 1 KQ414615.1 exonerate:protein2genome:local splice3 2577122 2577123 . + . intron_id 0 ; splice_site "AG" KQ414615.1 exonerate:protein2genome:local cds 2577124 2577165 . + . KQ414615.1 exonerate:protein2genome:local exon 2577124 2577165 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local similarity 2576855 2577165 111 + . alignment_id 1 ; Query CbirOr219 ; Align 2576855 334 159 ; Align 2577124 387 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr218 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 333 -> 383 Target range: 204775 -> 204925 334 : SerGluLysIlePheGluSerAlaTyrAsnThrLysTrpTyrAsnMetSerIleAlaT : 353 ||||||:!!:!!!:!! :!!||||||.!. !:!!|||! |||:!!!.! !! SerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsnL 204776 : TCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAACA : 204833 354 : hrArgLysLeuLeuIleIleIleMetMetLysSerArgThrProLeuValIleThrAl : 372 ! !||| !||||||:!!|||||| !:!:!!!:!! !|||||| !:!!||||| ysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuThrAl 204834 : AGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGc : 204890 373 : aGlyLysIleMetIleMetSerTyrValThrPhe : 383 |||||||:::... |||!!! :!!|||||| aGlyLysLeuPheProMetThrMetLeuThrPhe 204891 : aggaaaattatttcctatGACGATGCTAACGTTT : 204925 vulgar: CbirOr218 333 383 . KQ414617.1 204775 204925 + 110 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204776 204925 110 + . gene_id 1 ; sequence CbirOr218 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204776 204925 . + . KQ414617.1 exonerate:protein2genome:local exon 204776 204925 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204776 204925 110 + . alignment_id 1 ; Query CbirOr218 ; Align 204776 334 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr219 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 333 -> 387 Target range: 204772 -> 204934 334 : SerSerGluGluValHisGluSerAlaTyrAsnThrLysTrpTyrAsnMetProThrA : 353 !.!||||||||||||:!!! :!!||||||.!. !:!!|||! |||:!! !:!!| LysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerA 204773 : AAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGA : 204830 354 : snGlnArgLysLeuLeuValMetIleMetMetArgSerArgLysProSerArgIleTh : 372 ||:!! !||| !|||:!!:!:|||||| |||:!!!:!!:!||| ! !!:!!|| snLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuTh 204831 : ACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAAC : 204887 373 : rAlaGlyLysLeuValAsnLeuSerTyrValAsnPheSerAlaVal : 387 ||||||||||||| ::!!!! :!!!..|||!!! !||| rAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsnVal 204888 : CGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: CbirOr219 333 387 . KQ414617.1 204772 204934 + 118 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204773 204934 118 + . gene_id 1 ; sequence CbirOr219 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204773 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204773 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204773 204934 118 + . alignment_id 1 ; Query CbirOr219 ; Align 204773 334 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr213 Target: KQ414667.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold102, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 347 -> 400 Target range: 801761 -> 801451 348 : IleSerLeuArgSerArgGlnLeuLeuLysPheThrLeuLeuArgValThrLysProC : 367 |||.!! !|||! ! !||| !|||:!!.!!! !:!!:!!||| !! !! !|||| IleGlySerArgPheSerGlnSerLeuGlnIleMetMetMetArgSerArgIleProC 801761 : ATCGGTAGTCGTTTCTCTCAGAGTCTTCAGATCATGATGATGCGCTCGAGGATACCAT : 801704 368 : ysGlnIleThrAlaGlyLysMetTyrValMetSerMetGluAsnPheGlySer >>> : 385 ||:!!|||||||||!.!|||.!.||| !||||||:!!|||!:!|||..!!.! ysLysIleThrAlaAlaLysPheTyrSerMetSerLeuGluSerPheSerLys++ 801703 : GCAAGATAACCGCCGCTAAATTCTACAGCATGTCCTTGGAGAGCTTCTCGAAGgt... : 801648 386 : > Target Intron 1 >>>> IleIleLysAlaCysLeuSerTyrPheThrMetL : 396 151 bp :!!:!!!...!!! !!!!||||||||||||:!:| ++ValLeuSerThrSerPheSerTyrPheThrValL 801647 : ......................agGTACTCAGCACGTCTTTCTCCTACTTCACGGTCC : 801466 397 : euLeuSerLeuArg : 400 || !:!! !!:! euThrAlaThrLys 801465 : TCACAGCCACCAAA : 801452 vulgar: CbirOr213 347 400 . KQ414667.1 801761 801451 - 100 M 37 111 5 0 2 I 0 147 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414667.1 exonerate:protein2genome:local gene 801452 801761 100 - . gene_id 1 ; sequence CbirOr213 ; gene_orientation + KQ414667.1 exonerate:protein2genome:local cds 801651 801761 . - . KQ414667.1 exonerate:protein2genome:local exon 801651 801761 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 801649 801650 . - . intron_id 1 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801500 801650 . - . intron_id 1 KQ414667.1 exonerate:protein2genome:local splice3 801500 801501 . - . intron_id 0 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801452 801499 . - . KQ414667.1 exonerate:protein2genome:local exon 801452 801499 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local similarity 801452 801761 100 - . alignment_id 1 ; Query CbirOr213 ; Align 801762 348 111 ; Align 801500 385 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr221 Target: KQ414667.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold102, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 350 -> 391 Target range: 801737 -> 801463 351 : IleSerIleMetLeuLeuArgSerTyrValProIleArgIleThrAlaGlyLysLeuT : 370 :!!..!||||||:!!:!!|||||| :!!||| !!:!|||||||||!.!|||!!!| LeuGlnIleMetMetMetArgSerArgIleProCysLysIleThrAlaAlaLysPheT 801737 : CTTCAGATCATGATGATGCGCTCGAGGATACCATGCAAGATAACCGCCGCTAAATTCT : 801680 371 : yrThrLeuAsnLeuGluAsnPheSerSer >>>> Target Intron 1 >>>> : 380 ||!:!:!!::!||||||!:!||||||!.! 151 bp yrSerMetSerLeuGluSerPheSerLys++ ++ 801679 : ACAGCATGTCCTTGGAGAGCTTCTCGAAGgt.........................ag : 801501 381 : ValValArgThrSerPheSerTyrPheThrValLeu : 391 |||:!!!!!||||||||||||||||||||||||||| ValLeuSerThrSerPheSerTyrPheThrValLeu 801500 : GTACTCAGCACGTCTTTCTCCTACTTCACGGTCCTC : 801464 vulgar: CbirOr221 350 391 . KQ414667.1 801737 801463 - 122 M 29 87 5 0 2 I 0 147 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414667.1 exonerate:protein2genome:local gene 801464 801737 122 - . gene_id 1 ; sequence CbirOr221 ; gene_orientation + KQ414667.1 exonerate:protein2genome:local cds 801651 801737 . - . KQ414667.1 exonerate:protein2genome:local exon 801651 801737 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 801649 801650 . - . intron_id 1 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801500 801650 . - . intron_id 1 KQ414667.1 exonerate:protein2genome:local splice3 801500 801501 . - . intron_id 0 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801464 801499 . - . KQ414667.1 exonerate:protein2genome:local exon 801464 801499 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local similarity 801464 801737 122 - . alignment_id 1 ; Query CbirOr221 ; Align 801738 351 87 ; Align 801500 380 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr215 Target: KQ414667.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold102, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 343 -> 392 Target range: 801761 -> 801463 344 : IleSerLeuArgSerArgGlnLeuLeuLysPheThrLeuLeuArgAlaThrLysProC : 363 |||.!! !|||! ! !||| !|||:!!.!!! !:!!:!!|||:!!! !! !|||| IleGlySerArgPheSerGlnSerLeuGlnIleMetMetMetArgSerArgIleProC 801761 : ATCGGTAGTCGTTTCTCTCAGAGTCTTCAGATCATGATGATGCGCTCGAGGATACCAT : 801704 364 : ysGlnIleThrAlaGlyLysMetTyrIleMetSerMetGluAsnPheSerAla >>> : 381 ||:!!|||||||||!.!|||.!.|||! !||||||:!!|||!:!|||||| ! ysLysIleThrAlaAlaLysPheTyrSerMetSerLeuGluSerPheSerLys++ 801703 : GCAAGATAACCGCCGCTAAATTCTACAGCATGTCCTTGGAGAGCTTCTCGAAGgt... : 801648 382 : > Target Intron 1 >>>> IleIleGlnAlaCysIleSerTyrPheThrMetL : 392 151 bp :!!:!!....!!! !.!!||||||||||||:!:| ++ValLeuSerThrSerPheSerTyrPheThrValL 801647 : ......................agGTACTCAGCACGTCTTTCTCCTACTTCACGGTCC : 801466 393 : eu : 392 || eu 801465 : TC : 801464 vulgar: CbirOr215 343 392 . KQ414667.1 801761 801463 - 105 M 37 111 5 0 2 I 0 147 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414667.1 exonerate:protein2genome:local gene 801464 801761 105 - . gene_id 1 ; sequence CbirOr215 ; gene_orientation + KQ414667.1 exonerate:protein2genome:local cds 801651 801761 . - . KQ414667.1 exonerate:protein2genome:local exon 801651 801761 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 801649 801650 . - . intron_id 1 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801500 801650 . - . intron_id 1 KQ414667.1 exonerate:protein2genome:local splice3 801500 801501 . - . intron_id 0 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801464 801499 . - . KQ414667.1 exonerate:protein2genome:local exon 801464 801499 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local similarity 801464 801761 105 - . alignment_id 1 ; Query CbirOr215 ; Align 801762 344 111 ; Align 801500 381 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr218 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 333 -> 383 Target range: 1387619 -> 1387769 334 : SerGluLysIlePheGluSerAlaTyrAsnThrLysTrpTyrAsnMetSerIleAl : 352 ||||||:::||| :!!|||...|||||| ||||||:!!:!:!.! ! SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 353 : aThrArgLysLeuLeuIleIleIleMetMetLysSerArgThrProLeuValIleT : 371 ! ! !:::::::::::::::|||:::::::::|||!:!! ! !|||:!!:!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 372 : hrAlaGlyLysIleMetIleMetSerTyrValThrPhe : 383 |||||||||||.!!:!!! !:!:|||! !.!.!!||| hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPhe 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTT : 1387769 vulgar: CbirOr218 333 383 . KQ414716.1 1387619 1387769 + 102 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387769 102 + . gene_id 1 ; sequence CbirOr218 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387769 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387769 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387769 102 + . alignment_id 1 ; Query CbirOr218 ; Align 1387620 334 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr219 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 334 -> 387 Target range: 1387619 -> 1387778 335 : SerGluGluValHisGluSerAlaTyrAsnThrLysTrpTyrAsnMetProThrAs : 353 ||||||...:!! :!!|||...|||||| ||||||:!!:!: ! !!.. SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 354 : nGlnArgLysLeuLeuValMetIleMetMetArgSerArgLysProSerArgIleT : 372 .:!! !:::::::::::::::|||::::::||||||!:!||| !! !! !:!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 373 : hrAlaGlyLysLeuValAsnLeuSerTyrValAsnPheSerAlaVal : 387 |||||||||||!!!||||||||||||! !.! |||:!! ||| hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: CbirOr219 334 387 . KQ414716.1 1387619 1387778 + 115 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387778 115 + . gene_id 1 ; sequence CbirOr219 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387778 115 + . alignment_id 1 ; Query CbirOr219 ; Align 1387620 335 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr217PSE Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 160 -> 218 Target range: 887594 -> 887768 161 : ThrArgProValGlyPheProTyrHisValGluTyrTyrIleAspLeuGluLysTyrT : 180 |||..!||| ! ! !! !|||! |||||||||:!!|||||| |||||||||: ThrGluProArgGlnThrLeuTyrProValGluTyrHisIleAspSerGluLysTyrP 887595 : ACCGAACCCAGACAGACTCTATACCCAGTGGAGTACCACATCgacagtgaaaaatatt : 887652 181 : yrTyrProValLeuIleHisAsnTyrLeuAlaThrThrIleArgLeuThrIleValIl : 199 ::||| :!! ! !||| !||| !:!!|||..!:!!! !||| ! !..!:! heTyrLeuIleThrAlaHisCysTyrAlaSerThrValLeuLeuLeuLeuGlnThrVa 887653 : tttacctgATTACAGCTCATTGTTACGCCTCGACAGTACTTCTTCTGCTTCAAACTGT : 887709 200 : eAlaSerAspThrCysValAlaIleLeuValGlnHisCysCysAlaLeuPheSerVal : 218 !!.! !|||||| ! !:!!|||||||||||| !!||||||||||||:!!||| lValHisAspThrMetTyrIleValLeuValGlnHisGlyCysAlaLeuPheAlaVal 887710 : CGTACACGACACAATGTACATTGTTCTGGTCCAACATGGCTGCGCTTTATTCGCAGTT : 887766 vulgar: CbirOr217PSE 160 218 . KQ414735.1 887594 887768 + 134 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 887595 887768 134 + . gene_id 1 ; sequence CbirOr217PSE ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 887595 887768 . + . KQ414735.1 exonerate:protein2genome:local exon 887595 887768 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 887595 887768 134 + . alignment_id 1 ; Query CbirOr217PSE ; Align 887595 161 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr217PSE Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 133 -> 219 Target range: 891612 -> 891867 134 : IleTyrAlaPheGlySerLeuPheProLeuLeuAlaIleIleProLysIleLeuGlyA : 153 :!!||| ! !! !:!!!:! !|||||| !! !!!: !! !|||:!!! !: ValTyrMetThrLeuLeuIleTyrLeuLeuLeuProProMetSerLeuIleIleAspA 891613 : GTTTATATGACACTTTTAATCTACTTACTATTACCGCCCATGTCATTAATAATTGATG : 891670 154 : snAspValThrSerAsnTyrSerThrArgProValGlyPheProTyrHisValGluTy : 172 !!! !:!!:!!|||||||||||| !:! ! !..!||| !!:!.!.:!!!!:|| spValIleSerSerAsnTyrSer---GlnGluArgAsnPheLeuPheGluLeuAspTy 891671 : ACGTTATATCCTCAAATTATTCG---CAAGAGCGAAACTTTTTATTCGAACTCGACTA : 891724 173 : rTyrIleAspLeuGluLysTyrTyrTyrProValLeuIleHisAsnTyrLeuAlaThr : 191 | !:!:||| ::::::|||:::||| ::: ||||||:::|||:!!!.!||| rGlyValAspSerGlnGlnTyrPheTyrTyrIleSerIleHisSerTyrMetGlyThr 891725 : TGGCGTGGACAGccaacaatatttttattatatatccATTCATTCGTACATGGGAACT : 891781 192 : ThrIleArgLeuThrIleValIleAlaSerAspThrCysValAlaIleLeuValGlnH : 211 .!!:!! ! !!.!:!!:!! !.!!!!!|||||| ! ! !:!:! ! !|||| AlaValValAlaAsnLeuIleAlaThrCysAspThrThrTyrMetLeuTyrSerGlnH 891782 : GCTGTAGTTGCCAATTTAATTGCTACTTGCGATACTACCTACATGTTGTACTCTCAAC : 891841 212 : isCysCysAlaLeuPheSerValVal : 219 ||..!! !|||||||||:!!:!!||| isAlaTyrAlaLeuPheAlaIleVal 891842 : ATGCTTATGCTTTGTTTGCAATTGTA : 891867 vulgar: CbirOr217PSE 133 219 . KQ414735.1 891612 891867 + 119 M 27 81 G 1 0 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 891613 891867 119 + . gene_id 2 ; sequence CbirOr217PSE ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 891613 891867 . + . KQ414735.1 exonerate:protein2genome:local exon 891613 891867 . + . insertions 0 ; deletions 1 KQ414735.1 exonerate:protein2genome:local similarity 891613 891867 119 + . alignment_id 2 ; Query CbirOr217PSE ; Align 891613 134 81 ; Align 891694 162 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr222 Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 123 -> 211 Target range: 891594 -> 891864 124 : ThrIleTyrValCysLeuLeuTyrMetValIleValIlePheLeuLeuLeuProLeuL : 143 |||.!! !:!!...! !:!!||||||..!:!!:!!|||!:!||||||||||||! !! ThrPheValLeuAlaTyrValTyrMetThrLeuLeuIleTyrLeuLeuLeuProProM 891595 : ACTTTTGTTTTAGCATACGTTTATATGACACTTTTAATCTACTTACTATTACCGCCCA : 891652 144 : ysProLeuIlePheHisGly<-><->AlaAsnThrThrThrArgProLeuLeuLeuHi : 160 ! !!||||||.!! !!! ! :!!:::!.! !:!!!:! !! ! !!!! etSerLeuIleIleAspAspValIleSerSerAsnTyrSerGlnGluArgAsnPheLe 891653 : TGTCATTAATAATTGATGACGTTATATCCTCAAATTATTCGCAAGAGCGAAACTTTTT : 891709 161 : sLysValLysTyrTyrTyrIleAspIleAspLysTyrTyrPheLeuIleTrpIleHis : 179 ! ! !!||| !:!:|||! ...:::|||:::::: ||| |||||| uPheGluLeuAspTyrGlyValAspSerGlnGlnTyrPheTyrTyrIleSerIleHis 891710 : ATTCGAACTCGACTATGGCGTGGACAGccaacaatatttttattatatatccATTCAT : 891766 180 : GlyTyrLeuAlaSerLeuIleCysGlyThrTrpIleIleAlaAlaAspAlaThrPheM : 199 ..!|||:!!!.!!!! !:!! !!.!!.!! ||| !.!!..!|||.!!|||!:!| SerTyrMetGlyThrAlaValValAlaAsnLeuIleAlaThrCysAspThrThrTyrM 891767 : TCGTACATGGGAACTGCTGTAGTTGCCAATTTAATTGCTACTTGCGATACTACCTACA : 891826 200 : etIlePheValGlnHisAlaCysGlyLeuPheIleVal : 211 ||:!:!:! !|||||||||! !!.!|||||| !:!! etLeuTyrSerGlnHisAlaTyrAlaLeuPheAlaIle 891827 : TGTTGTACTCTCAACATGCTTATGCTTTGTTTGCAATT : 891864 vulgar: CbirOr222 123 211 . KQ414735.1 891594 891864 + 102 M 26 78 G 0 6 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 891595 891864 102 + . gene_id 1 ; sequence CbirOr222 ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 891595 891864 . + . KQ414735.1 exonerate:protein2genome:local exon 891595 891864 . + . insertions 6 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 891595 891864 102 + . alignment_id 1 ; Query CbirOr222 ; Align 891595 124 78 ; Align 891679 150 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr221 Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 156 -> 218 Target range: 887588 -> 887774 157 : AsnIleSerGluGlyArgProLeuMetPheArgThrGluTyrPheLeuAspSerGluL : 176 ||| !!!||| !|||! ! !:!:!:!! !..!|||||| !:!!|||||||||| AsnArgThrGluProArgGlnThrLeuTyrProValGluTyrHisIleAspSerGluL 887589 : AACCGGACCGAACCCAGACAGACTCTATACCCAGTGGAGTACCACATCgacagtgaaa : 887646 177 : ysTyrTyrTyrProLeuLeuValHisSerTyrIleGlyThrLeuGlyPheValThrIl : 195 |||||:::||| :!! !!.!|||!!!||| !..!|||:!! !.!!:!! ! ysTyrPheTyrLeuIleThrAlaHisCysTyrAlaSerThrValLeuLeuLeuLeuGl 887647 : aatatttttacctgATTACAGCTCATTGTTACGCCTCGACAGTACTTCTTCTGCTTCA : 887703 196 : eValValAlaIleAspSerMetLeuValPheHisIleGlnHisGluCysGlyMetCys : 214 !..!|||!.! !|||!!!|||! !:!! !!! :!!||||||! |||!.!:!:! ! nThrValValHisAspThrMetTyrIleValLeuValGlnHisGlyCysAlaLeuPhe 887704 : AACTGTCGTACACGACACAATGTACATTGTTCTGGTCCAACATGGCTGCGCTTTATTC : 887760 215 : GluIleLeuGly : 218 ! !:!! !||| AlaValThrGly 887761 : GCAGTTACGGGG : 887774 vulgar: CbirOr221 156 218 . KQ414735.1 887588 887774 + 114 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 887589 887774 114 + . gene_id 1 ; sequence CbirOr221 ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 887589 887774 . + . KQ414735.1 exonerate:protein2genome:local exon 887589 887774 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 887589 887774 114 + . alignment_id 1 ; Query CbirOr221 ; Align 887589 157 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr221 Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 132 -> 217 Target range: 891612 -> 891867 133 : LeuTyrGlySerMetThrProPheLeuValValProValIleLeuAsnThrAlaSerT : 152 :!!||| !!!!:!: ! !!:!|||:!!:!!||| !!!:! ! ! ! !..! ValTyrMetThrLeuLeuIleTyrLeuLeuLeuProProMetSerLeuIleIleAspA 891613 : GTTTATATGACACTTTTAATCTACTTACTATTACCGCCCATGTCATTAATAATTGATG : 891670 153 : yrMetGlyLeuTyrAsnIleSerGluGlyArgProLeuMetPheArgThrGluTyrPh : 171 !!:!: !! !! ||| !|||:!!! !||| !!!!:!:|||..! !!!:||| spValIleSerSerAsnTyrSerGlnGluArgAsnPheLeuPheGluLeuAspTyrGl 891671 : ACGTTATATCCTCAAATTATTCGCAAGAGCGAAACTTTTTATTCGAACTCGACTATGG : 891727 172 : eLeuAspSerGluLysTyrTyrTyrProLeuLeuValHisSerTyrIleGlyThrLeu : 190 !:!!||||||::::::|||:::||| ::: :!!|||||||||!!:|||||| ! yValAspSerGlnGlnTyrPheTyrTyrIleSerIleHisSerTyrMetGlyThrAla 891728 : CGTGGACAGccaacaatatttttattatatatccATTCATTCGTACATGGGAACTGCT : 891784 191 : GlyPheValThrIleValValAlaIleAspSerMetLeuValPheHisIleGlnHisG : 210 ! ! !!!.!!.!:!!:!!!.!.!! !|||!!!! ! !:!!!!.:!! !||||||! ValValAlaAsnLeuIleAlaThrCysAspThrThrTyrMetLeuTyrSerGlnHisA 891785 : GTAGTTGCCAATTTAATTGCTACTTGCGATACTACCTACATGTTGTACTCTCAACATG : 891844 211 : luCysGlyMetCysGluIleLeu : 217 ! !!.!:!!! !! !|||:!! laTyrAlaLeuPheAlaIleVal 891845 : CTTATGCTTTGTTTGCAATTGTA : 891867 vulgar: CbirOr221 132 217 . KQ414735.1 891612 891867 + 108 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 891613 891867 108 + . gene_id 2 ; sequence CbirOr221 ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 891613 891867 . + . KQ414735.1 exonerate:protein2genome:local exon 891613 891867 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 891613 891867 108 + . alignment_id 2 ; Query CbirOr221 ; Align 891613 133 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr223 Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 154 -> 212 Target range: 887603 -> 887777 155 : ArgProLeuLeuHisArgValGluTyrTyrIleAspMetAspLysTyrTyrPheProI : 174 |||! ! !|||:!!! !|||||||||:!!|||||| :::||||||:::::: | ArgGlnThrLeuTyrProValGluTyrHisIleAspSerGluLysTyrPheTyrLeuI 887604 : AGACAGACTCTATACCCAGTGGAGTACCACATCgacagtgaaaaatatttttacctgA : 887661 175 : leLeuIleHisGlyTyrLeuThrAlaIleValCysIleSerIleAlaIleAlaThrAs : 193 || ! !||| !!||| !:!!.!!:!!:!! !:!: ! !.!!:!!!.! !|| leThrAlaHisCysTyrAlaSerThrValLeuLeuLeuLeuGlnThrValValHisAs 887662 : TTACAGCTCATTGTTACGCCTCGACAGTACTTCTTCTGCTTCAAACTGTCGTACACGA : 887718 194 : pThrMetTyrValIleMetValGlnHisValCysGlyLeuPheThrIleIleGlyGln : 212 ||||||||||:!!:!!:!!|||||||||! !|||!.!||||||.!!:!!! |||||| pThrMetTyrIleValLeuValGlnHisGlyCysAlaLeuPheAlaValThrGlyGln 887719 : CACAATGTACATTGTTCTGGTCCAACATGGCTGCGCTTTATTCGCAGTTACGGGGCAA : 887775 vulgar: CbirOr223 154 212 . KQ414735.1 887603 887777 + 143 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 887604 887777 143 + . gene_id 1 ; sequence CbirOr223 ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 887604 887777 . + . KQ414735.1 exonerate:protein2genome:local exon 887604 887777 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 887604 887777 143 + . alignment_id 1 ; Query CbirOr223 ; Align 887604 155 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr223 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 134 Query range: 162 -> 213 Target range: 17949 -> 17796 163 : TyrTyrIleAspMetAspLysTyrTyrPheProIleLeuIleHisGlyTyrLeuThrAla : 182 |||!:!:!!||| ! :!!||||||!:! !|||:!!:!!|||||| ! !||| ! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIle 17949 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATT : 17892 183 : IleValCysIleSerIleAlaIleAlaThrAspThrMetTyrValIleMetValGlnHis : 202 :!::!! :!: !:!: ! !||| !||||||! |||:!!:!!:!!||||||||| LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 17891 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 17832 203 : ValCysGlyLeuPheThrIleIleGlyGlnGlu : 213 ..!||||||||||||.!!:!: !||| !||| ThrCysGlyLeuPheAlaValAlaGly***Glu 17831 : ACTTGCGGACTGTTCGCCGTGGCCGGGTGAGAA : 17797 vulgar: CbirOr223 162 213 . KQ414772.1 17949 17796 - 134 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17797 17949 134 - . gene_id 1 ; sequence CbirOr223 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17797 17949 . - . KQ414772.1 exonerate:protein2genome:local exon 17797 17949 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17797 17949 134 - . alignment_id 1 ; Query CbirOr223 ; Align 17950 163 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr223 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 144 -> 211 Target range: 42673 -> 42472 145 : LeuLeuGluSerSerLeuAsnSerThrAsnArgProLeuLeuHisArgValGluTyrTyr : 164 :!!:!! !|||!.! !.!.||| !!!. ! !!!!:!!:!!! !!.! ! ||| ! ValMetLeuSerLysAsnGluSerArgLysLeuGlyPheIleTyrProAlaTyrTyrGly 42673 : GTTATGTTATCGAAAAACGAGTCACGAAAGTTGGGTTTCATTTACCCTGCCTATTATGGC : 42616 165 : IleAspMetAspLysTyrTyrPheProIleLeuIleHisGlyTyrLeuThrAlaIleVal : 184 :!!|||...||||||||||||!:! !|||:!! !||| ! ! ! !!.!:!!||| ValAspGlnAspLysTyrTyrTyrTyrIleIleAlaHisMetThrSerGlyGlyLeuVal 42615 : GTTGATCAAGACAAGTATTATTACTATATAATAGCTCACATGACATCTGGGGGCTTAGTG : 42556 185 : CysIleSerIleAlaIleAlaThrAspThrMetTyrValIleMetValGlnHisValCys : 204 .!!! !! ! !|||:!! !||||||!!:|||:!!! !!!:|||||||||!.!||| ValPhePheThrPheIleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCys 42555 : GTGTTTTTCACCTTTATCTCCTGCGACACGATTTACATGAATATCGTGCAACACGCGTGC : 42496 205 : GlyLeuPheThrIleIleGly : 211 ||||||!!. !||| !||| GlyLeuLeuLeuIleSerGly 42495 : GGATTGTTGTTGATTTCTGGG : 42473 vulgar: CbirOr223 144 211 . KQ414772.1 42673 42472 - 107 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42473 42673 107 - . gene_id 2 ; sequence CbirOr223 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42473 42673 . - . KQ414772.1 exonerate:protein2genome:local exon 42473 42673 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42473 42673 107 - . alignment_id 2 ; Query CbirOr223 ; Align 42674 145 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr223 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 147 -> 211 Target range: 33604 -> 33412 148 : SerSerLeuAsnSerThrAsnArgProLeuLeuHisArgValGluTyrTyrIleAspMet : 167 |||!.! !.!.||| !!!. ! !|||:!!:!!! !!.! ! ||| !||||||..! SerLysAsnGluSerArgLysLeuSerLeuMetTyrProAlaTyrTyrGlyIleAspGln 33604 : TCGAAAAACGAGTCACGAAAATTAAGTTTGATGTACCCTGCCTATTACGGCATTGACCAG : 33547 168 : AspLysTyrTyrPheProIleLeuIleHisGlyTyrLeuThrAlaIleValCysIleSer : 187 ||||||||||||::: :::::: !||| ! !.!!!.! !!.! .!!! ! AspLysTyrTyrTyrTyrLeuMetAlaHisMetMetSerAlaGlyAlaAlaValPhePhe 33546 : GacaagtattattattatctaatgGCTCACATGATGAGCGCAGGGGCAGCGGTGTTTTTC : 33487 188 : IleAlaIleAlaThrAspThrMetTyrValIleMetValGlnHisValCysGlyLeuPhe : 207 :!! !!!::!! !||||||!!:|||:!!! !!!:|||||||||!.!|||||||||!!. ValPheMetSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeu 33486 : GTATTTATGTCCTGCGACACGATTTATATGAATATCGTTCAACACGCGTGCGGATTGTTG : 33427 208 : ThrIleIleGly : 211 !||| !||| PheIleSerGly 33426 : TTCATTTCCGGG : 33413 vulgar: CbirOr223 147 211 . KQ414772.1 33604 33412 - 107 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33413 33604 107 - . gene_id 3 ; sequence CbirOr223 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33413 33604 . - . KQ414772.1 exonerate:protein2genome:local exon 33413 33604 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 33413 33604 107 - . alignment_id 3 ; Query CbirOr223 ; Align 33605 148 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr228 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 125 -> 215 Target range: 18072 -> 17802 126 : TyrSerLeuTyrCysPheAlaCysLeuAlaLeuPheMetCysAlaSerLeuIleProGln : 145 !:! !!:!! !!...!:! !|||! ! !||||||!!: !.! !!! ! !!!:! PheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpSerThrArg 18072 : TTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGTCGACCCGA : 18015 146 : LeuLeuAsnValValLeuProLeuAsnGluSerArgProValLeuProProTyrProGly : 165 |||:!!||| ! ! ! !!! !||| !!!!! ! !:!!! ! ! ! |||||| LeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuGlnPheValIleProGly 18014 : TTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGA : 17955 166 : HisTyrPheValAspGluGluGluTyrPheLeuHisIlePheCysHisSerIleValAla : 185 :!!|||||||||||||||! !||||||!:!! !:!!|||.!. !|||.!!! !.!! TyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThr 17954 : TATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACA : 17895 186 : TrpGluIleAlaMetThrGlyIleValAlaHisAspCysMetPheLeuSerCysValGlu : 205 !|||!.!:!!..!! ! ! !||| !||| !! !:!:!! ! |||:!! IleLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGln 17894 : ATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAA : 17835 206 : HisGlyCysSerIlePheAlaValAlaGly : 215 ||| !|||.!!:!:||||||||||||||| HisThrCysGlyLeuPheAlaValAlaGly 17834 : CACACTTGCGGACTGTTCGCCGTGGCCGGG : 17803 vulgar: CbirOr228 125 215 . KQ414772.1 18072 17802 - 121 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17803 18072 121 - . gene_id 1 ; sequence CbirOr228 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17803 18072 . - . KQ414772.1 exonerate:protein2genome:local exon 17803 18072 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17803 18072 121 - . alignment_id 1 ; Query CbirOr228 ; Align 18073 126 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr226 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 332 -> 388 Target range: 16779 -> 16528 333 : TyrAsnSerTyrTrpTyrArgGluSerThrLysSerGlnLysLeuIleMetLeuMetMet : 352 |||.!.|||! ||||||! !...|||:!!|||!!!||| !||| !:!!:!! !:!: TyrGluSerLeuTrpTyrThrSerSerSerLysThrGlnAlaLeuTyrValValAlaLeu 16779 : TACGAATCATTATGGTACACAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCGTTA : 16722 353 : MetLysSerLeuGlnProCysCysLeuSerValGlyLysIleTyrIleLeuSerMetGln : 372 !:!!:!||| !||| !||||||!!!!.!||| :!! !|||!:!|||||| ArgArgAsnLeuThrProThrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMetGln 16721 : CGAAGAAACCTAACACCTACCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATGCAA : 16662 373 : SerPheSerThr >>>> Target Intron 1 >>>> IleLeuLysAlaSerValS : 383 ||||||:!! ! 83 bp :!::!!||| !||||||| SerPheAlaGlu++ ++ValValLysMetSerValS 16661 : AGCTTCGCAGAGgt.........................agGTGGTAAAAATGTCCGTTT : 16546 384 : erTyrPheThrMetLeu : 388 |||||!:!|||:!!||| erTyrTyrThrValLeu 16545 : CCTATTATACGGTGTTG : 16529 vulgar: CbirOr226 332 388 . KQ414772.1 16779 16528 - 123 M 44 132 5 0 2 I 0 79 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 16529 16779 123 - . gene_id 1 ; sequence CbirOr226 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 16648 16779 . - . KQ414772.1 exonerate:protein2genome:local exon 16648 16779 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 16646 16647 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 16565 16647 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 16565 16566 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 16529 16564 . - . KQ414772.1 exonerate:protein2genome:local exon 16529 16564 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 16529 16779 123 - . alignment_id 1 ; Query CbirOr226 ; Align 16780 333 132 ; Align 16565 377 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr226 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 127 -> 218 Target range: 14157 -> 13884 128 : ValTyrCysThrLeuSerLeuPheLeuPheLeuSerLeuSerLeuIleProPheAlaLeu : 147 ||| !!...! !:!!!!!:!!.!!||||||:!!!!! ! !!:!!! !||| ! !||| ValAsnAlaIleValCysValIleLeuPheValThrThrProValThrProHisIleLeu 14157 : GTGAACGCGATCGTTTGTGTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATTTTG : 14100 148 : AspIleIleLeuProLeuAsnGluSerArgProIleValSerProTyrProAlaAsnTyr : 167 ||||||:!!|||||| !|||||||||||| !:!!!.!! ! !||||||||| !!||| AspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyr 14099 : GACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTAT : 14040 168 : PheValAspValArgGluHisPhePheLysIleTyrTrpHisSerIleLeuAlaTrpGlu : 187 |||..!|||! !!.!:!!:!! ! ! ! ||| ! !|||! ! ! !!.! PheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeu 14039 : TTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTT : 13980 188 : IleIleIleIleGlyIleIleThrTyrMetCysMetTyrValThrTyrIleGluHisVal : 207 :!::!:.!! !! ! !:!!.!!! ! !! |||:!! ! !:!::!!|||! ! ValValPheTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGly 13979 : GTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGC : 13920 208 : CysSerIlePheAlaThrIleGlyPheArgIle : 218 |||.!!:!:!!.|||..! !||| :::||| CysGlyLeuLeuAlaValSerGly***LysIle 13919 : TGCGGATTGTTGGCCGTGTCCGGgtaaaaaatt : 13885 vulgar: CbirOr226 127 218 . KQ414772.1 14157 13884 - 123 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13885 14157 123 - . gene_id 2 ; sequence CbirOr226 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13885 14157 . - . KQ414772.1 exonerate:protein2genome:local exon 13885 14157 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13885 14157 123 - . alignment_id 2 ; Query CbirOr226 ; Align 14158 128 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr225 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 126 -> 217 Target range: 18075 -> 17802 127 : IleTyrLeuValTyrCysPheLeuAlaValValIlePheMetSerMetSerLeuValPro : 146 |||!:!! !||| !!...!:!:!!..! ! !!:!:|||!!:..!:!! !!! ! ! !! IlePheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpSerThr 18075 : ATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGTCGACC : 18018 147 : TyrIleLeuAsnIleValArgProLeuAsnGlnSerArgProIleLeuProProTyrArg : 166 :!::!!||| !!:! !!! !||| !!!!! ! !:!:! ! ! ! ! ! ArgLeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuGlnPheValIlePro 18017 : CGATTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCC : 17958 167 : GlyTyrTyrPheIleAspSerGlnGluHisPhePheGlnIleLeuTrpHisSerIleVal : 186 ||||||||||||:!!|||..! !|||:!!!:!!:! ! |||:!! |||.!!! ! GlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCys 17957 : GGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGC : 17898 187 : GlyTrpGluValValValAlaAlaValValAlaHisAspSerLeuPheValThrTyrVal : 206 ! !:!!||||||!.!!.! ! !||| !|||!!! !!:!:!!..! ||| ThrIleLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuVal 17897 : ACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTG : 17838 207 : GluHisIleCysSerMetPheAlaLeuIleGly : 217 :!!|||! !|||.!!:!!||||||:!! !||| GlnHisThrCysGlyLeuPheAlaValAlaGly 17837 : CAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 17803 vulgar: CbirOr225 126 217 . KQ414772.1 18075 17802 - 112 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17803 18075 112 - . gene_id 1 ; sequence CbirOr225 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17803 18075 . - . KQ414772.1 exonerate:protein2genome:local exon 17803 18075 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17803 18075 112 - . alignment_id 1 ; Query CbirOr225 ; Align 18076 127 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr225 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 129 -> 184 Target range: 45967 -> 45802 130 : ValTyrCysPheLeuAlaValValIlePheMetSerMetSerLeuValProTyrIleLeu : 149 ||| ! !:!:!!!.!||| !:!:||| !!! ! !!|||:!!|||!:!|||||| ValThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeu 45967 : GTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTG : 45910 150 : AsnIleValArgProLeuAsnGlnSerArgProIleLeuProProTyrArgGlyTyrTyr : 169 :!!:!!:!! !|||||||||:!!||||||||| !||| ! !!|||!:!!.!|||! ! AspLeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyrCys 45909 : GACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTACTGT : 45850 170 : PheIleAspSerGlnGluHisPhePheGlnIleLeuTrpHisSer : 184 !:!.!!:!! !!.!.!!::!!!:!!:! ! :!!:!! !!:!!!!! TyrPheAsnProAspAspTyrTyrTyrTyrValValGlyTyrThr 45849 : TACTTCAATCCGGACGACTACTATTATTACGTCGTGGGGTACACC : 45803 vulgar: CbirOr225 129 184 . KQ414772.1 45967 45802 - 108 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45803 45967 108 - . gene_id 2 ; sequence CbirOr225 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45803 45967 . - . KQ414772.1 exonerate:protein2genome:local exon 45803 45967 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45803 45967 108 - . alignment_id 2 ; Query CbirOr225 ; Align 45968 130 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr227 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 143 Query range: 127 -> 215 Target range: 14157 -> 13893 128 : IleTyrCysPheLeuThrThrTyrLeuPheIleLeuMetSerLeuGluProPheIleLeu : 147 :!: !!....!!:!! !..! !||||||:!: !! ! !!:!! !||| !|||||| ValAsnAlaIleValCysValIleLeuPheValThrThrProValThrProHisIleLeu 14157 : GTGAACGCGATCGTTTGTGTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATTTTG : 14100 148 : AspIleIleLeuProLeuAsnGluSerArgProIleLeuProProTyrProSerTyrTyr : 167 ||||||:!!|||||| !|||||||||||| !:!! ! ! !||||||:!!|||||| AspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyr 14099 : GACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTAT : 14040 168 : PheValAspThrGluGluTyrPhePheGlnIlePheLeuHisThrIleMetValTrpThr : 187 |||..!||| !.!.:!!||| ! ! ! |||.!! !|||! ! ||| ! PheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeu 14039 : TTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTT : 13980 188 : PheIleValIleGlyIleGlnAlaHisAspCysMetPheIleThrTyrValGluHisIle : 207 ! :!: !! !! ! ! ||| !||| !! !:!||| ! !|||:!!||| ! ValValPheTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGly 13979 : GTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGC : 13920 208 : CysSerSerPheAlaValValGly : 215 |||.!!! !!!.|||||| !||| CysGlyLeuLeuAlaValSerGly 13919 : TGCGGATTGTTGGCCGTGTCCGGg : 13894 vulgar: CbirOr227 127 215 . KQ414772.1 14157 13893 - 143 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13894 14157 143 - . gene_id 1 ; sequence CbirOr227 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13894 14157 . - . KQ414772.1 exonerate:protein2genome:local exon 13894 14157 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13894 14157 143 - . alignment_id 1 ; Query CbirOr227 ; Align 14158 128 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr227 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 124 -> 215 Target range: 18075 -> 17802 125 : LeuTyrThrIleTyrCysPheLeuThrThrTyrLeuPheIleLeuMetSerLeuGluPro : 144 :!!!:! !!:!: !!...!:!:!! !:!!!:!|||||||||! !:!! !!! !..! !! IlePheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpSerThr 18075 : ATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGTCGACC : 18018 145 : PheIleLeuAspIleIleLeuProLeuAsnGluSerArgProIleLeuProProTyrPro : 164 :!::!!:!! ! ! !!! !||| !!!!! ! !:!:! ! ! ! ||| ArgLeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuGlnPheValIlePro 18017 : CGATTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCC : 17958 165 : SerTyrTyrPheValAspThrGluGluTyrPhePheGlnIlePheLeuHisThrIleMet : 184 .!!||||||||||||||| !! !||||||!:!!:! ! |||.!.|||||| !! GlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCys 17957 : GGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGC : 17898 185 : ValTrpThrPheIleValIleGlyIleGlnAlaHisAspCysMetPheIleThrTyrVal : 204 ..! !.!!:!!|||:!:! ! ! ||| !||| !! !:!!!:..! ||| ThrIleLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuVal 17897 : ACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTG : 17838 205 : GluHisIleCysSerSerPheAlaValValGly : 215 :!!|||! !|||.!! !|||||||||!.!||| GlnHisThrCysGlyLeuPheAlaValAlaGly 17837 : CAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 17803 vulgar: CbirOr227 124 215 . KQ414772.1 18075 17802 - 119 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17803 18075 119 - . gene_id 2 ; sequence CbirOr227 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17803 18075 . - . KQ414772.1 exonerate:protein2genome:local exon 17803 18075 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17803 18075 119 - . alignment_id 2 ; Query CbirOr227 ; Align 18076 125 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr227 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 121 -> 182 Target range: 45985 -> 45802 122 : PheSerLeuLeuTyrThrIleTyrCysPheLeuThrThrTyrLeuPheIleLeuMetSer : 141 !!.|||:!!! ! !:!!:!! ! !:!:!! !..!! !:!!||| ! ! ! !! LeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThrAlaPro 45985 : TTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCC : 45928 142 : LeuGluProPheIleLeuAspIleIleLeuProLeuAsnGluSerArgProIleLeuPro : 161 ||| !|||||||||||||||:!!|||! !||||||||||||||||||||| !||| ! LeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArgLeuTyr 45927 : CTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTAC : 45868 162 : ProTyrProSerTyrTyrPheValAspThrGluGluTyrPhePheGlnIlePheLeuHis : 181 !!||| !:!!|||! !!:! !!:!! !!!!:!!:|||!:!!:! ! :!! ! !:!! AlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValValGlyTyr 45867 : GCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTGGGGTAC : 45808 182 : Thr : 182 ||| Thr 45807 : ACC : 45803 vulgar: CbirOr227 121 182 . KQ414772.1 45985 45802 - 107 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45803 45985 107 - . gene_id 3 ; sequence CbirOr227 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45803 45985 . - . KQ414772.1 exonerate:protein2genome:local exon 45803 45985 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45803 45985 107 - . alignment_id 3 ; Query CbirOr227 ; Align 45986 122 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr222 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 163 -> 211 Target range: 17952 -> 17808 164 : TyrTyrTyrIleAspIleAspLysTyrTyrPheLeuIleTrpIleHisGlyTyrLeuAla : 183 ||||||!:!:!!||| !! :!!||||||!:!! !||| :!!|||||| ! !.!! TyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThr 17952 : TATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACA : 17895 184 : SerLeuIleCysGlyThrTrpIleIleAlaAlaAspAlaThrPheMetIlePheValGln : 203 ! !|||||| ! !..! ! ! !|||..!|||.!!!:!!:!|||:!!.!.|||||| IleLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGln 17894 : ATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAA : 17835 204 : HisAlaCysGlyLeuPheIleVal : 211 |||.!!|||||||||||| !||| HisThrCysGlyLeuPheAlaVal 17834 : CACACTTGCGGACTGTTCGCCGTG : 17809 vulgar: CbirOr222 163 211 . KQ414772.1 17952 17808 - 115 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17809 17952 115 - . gene_id 1 ; sequence CbirOr222 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17809 17952 . - . KQ414772.1 exonerate:protein2genome:local exon 17809 17952 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17809 17952 115 - . alignment_id 1 ; Query CbirOr222 ; Align 17953 164 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr222 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 163 -> 212 Target range: 42622 -> 42475 164 : TyrTyrTyrIleAspIleAspLysTyrTyrPheLeuIleTrpIleHisGlyTyrLeuAla : 183 |||||| !:!!||| !||||||||||||!:!! !||| !||| ! ! !!.! TyrTyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAlaHisMetThrSerGly 42622 : TATTATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCTCACATGACATCTGGG : 42565 184 : SerLeuIleCysGlyThrTrpIleIleAlaAlaAspAlaThrPheMetIlePheValGln : 203 .!!|||:!: ! ! .!!|||:!!..!|||.!!! !!:!|||! !.!!|||||| GlyLeuValValPhePheThrPheIleSerCysAspThrIleTyrMetAsnIleValGln 42564 : GGCTTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTACATGAATATCGTGCAA : 42505 204 : HisAlaCysGlyLeuPheIleValThr : 212 |||||||||||||||!!.:!::!!:!! HisAlaCysGlyLeuLeuLeuIleSer 42504 : CACGCGTGCGGATTGTTGTTGATTTCT : 42476 vulgar: CbirOr222 163 212 . KQ414772.1 42622 42475 - 105 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42476 42622 105 - . gene_id 2 ; sequence CbirOr222 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42476 42622 . - . KQ414772.1 exonerate:protein2genome:local exon 42476 42622 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42476 42622 105 - . alignment_id 2 ; Query CbirOr222 ; Align 42623 164 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr222 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 129 -> 212 Target range: 20577 -> 20322 130 : LeuTyrMetValIleValIlePheLeuLeuLeuProLeuLysProLeuIle<-><->Phe : 147 |||!:!:!: ! !.!|||||||||! !:!!|||!!! !|||:!!||| .!! LeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAspIle 20577 : TTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATT : 20520 148 : HisGlyAlaAsnThrThrThrArgProLeuLeuLeuHisLysValLysTyrTyrTyrIle : 167 :!!!.! !! !.!! !|||||| !! !:!!!!! ! ! ! ||||||!::!!: TyrAlaProLeuAsnLysThrArgLysArgValPheValTyrProAlaTyrTyrTrpMet 20519 : TACGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATG : 20460 168 : AspIleAspLysTyrTyrPheLeuIleTrpIleHisGlyTyrLeuAlaSerLeuIleCys : 187 ||| !!!::!!||||||.!.:!!!!: |||||| ! !!!!.! !:!!!!: ! AspProGluGlnTyrTyrMetIleMetIleIleHisIleMetPheValValIleMetVal 20459 : GATCCTGAGCAATACTACATGATAATGATAATACACATAATGTTCGTGGTGATCATGGTC : 20400 188 : GlyThrTrpIleIleAlaAlaAspAlaThrPheMetIlePheValGlnHisAlaCysGly : 207 !!..! .!! !|||..!||| !!.!!:!:!! ! !|||||||||||||||||| CysValIlePheCysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGly 20399 : TGTGTCATATTCTGTGCTTGCGACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGC : 20340 208 : LeuPheIleValThr : 212 |||!!. !|||||| LeuLeuAlaValThr 20339 : TTATTGGCTGTCACC : 20323 vulgar: CbirOr222 129 212 . KQ414772.1 20577 20322 - 105 M 17 51 G 0 6 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20323 20577 105 - . gene_id 3 ; sequence CbirOr222 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20323 20577 . - . KQ414772.1 exonerate:protein2genome:local exon 20323 20577 . - . insertions 6 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20323 20577 105 - . alignment_id 3 ; Query CbirOr222 ; Align 20578 130 51 ; Align 20521 147 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr222 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 149 -> 212 Target range: 33604 -> 33415 150 : AlaAsnThrThrThrArgProLeuLeuLeuHisLysValLysTyrTyrTyrIleAspIle : 169 :!!!!.!.! !:!!||| !||| !||| ! ! |||||| !|||||| SerLysAsnGluSerArgLysLeuSerLeuMetTyrProAlaTyrTyrGlyIleAspGln 33604 : TCGAAAAACGAGTCACGAAAATTAAGTTTGATGTACCCTGCCTATTACGGCATTGACCAG : 33547 170 : AspLysTyrTyrPheLeuIleTrpIleHisGlyTyrLeuAlaSerLeuIleCysGlyThr : 189 ||||||||||||::: ::: !||| ! !|||.!! ! ! ! AspLysTyrTyrTyrTyrLeuMetAlaHisMetMetSerAlaGlyAlaAlaValPhePhe 33546 : GacaagtattattattatctaatgGCTCACATGATGAGCGCAGGGGCAGCGGTGTTTTTC : 33487 190 : TrpIleIleAlaAlaAspAlaThrPheMetIlePheValGlnHisAlaCysGlyLeuPhe : 209 .!!!!::!!..!|||.!!! !!:!|||! !.!!|||||||||||||||||||||!!. ValPheMetSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeu 33486 : GTATTTATGTCCTGCGACACGATTTATATGAATATCGTTCAACACGCGTGCGGATTGTTG : 33427 210 : IleValThr : 212 .!!:!!:!! PheIleSer 33426 : TTCATTTCC : 33416 vulgar: CbirOr222 149 212 . KQ414772.1 33604 33415 - 100 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33416 33604 100 - . gene_id 4 ; sequence CbirOr222 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33416 33604 . - . KQ414772.1 exonerate:protein2genome:local exon 33416 33604 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 33416 33604 100 - . alignment_id 4 ; Query CbirOr222 ; Align 33605 150 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr224PSE(S) Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 125 -> 216 Target range: 14166 -> 13893 126 : PhePhePheAlaHisCysPheLeuThrMetCysIleIleMetLeuMetSerLeuMetSer : 145 !:!! .!.!.!:!!....!!:!! !:!: !:!:.!!:!! !! ! !!:!!! !! TyrSerIleValAsnAlaIleValCysValIleLeuPheValThrThrProValThrPro 14166 : TATTCGATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGACCACGCCGGTGACACCG : 14109 146 : PheIleLeuAspIleValLeuProLeuAsnGluSerArgProValLeuLeuProTyrPro : 165 !||||||||||||:!!|||||| !|||||||||||| !||| !! ! !|||||| HisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrPro 14108 : CATATTTTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCG : 14049 166 : SerTyrTyrPheValAspAlaGluGluTyrValPheGlnIlePheSerHisThrIleVal : 185 :!!|||||||||..!|||! !.!.:!!|||! ! ! ! |||.!!!!!|||! ! ! AlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSer 14048 : GCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCC : 13989 186 : AlaTrpPhePheLeuGlyIleGlyIleMetAlaHisAspGlyMetPheIleThrTyrIle : 205 !.! .!! ! :!! ! !! ! !:!:||| !||| !! !:!||| ! !:!: ValIleLeuValValPheTyrValTyrValAlaCysAspThrSerTyrIleTyrValVal 13988 : GTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTG : 13929 206 : GluHisIleCysSerSerPheAlaValIleGly : 216 :!!||| !|||.!!! !!!.|||||| !||| GlnHisGlyCysGlyLeuLeuAlaValSerGly 13928 : CAACACGGCTGCGGATTGTTGGCCGTGTCCGGg : 13894 vulgar: CbirOr224PSE(S) 125 216 . KQ414772.1 14166 13893 - 124 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13894 14166 124 - . gene_id 1 ; sequence CbirOr224PSE(S) ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13894 14166 . - . KQ414772.1 exonerate:protein2genome:local exon 13894 14166 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13894 14166 124 - . alignment_id 1 ; Query CbirOr224PSE(S) ; Align 14167 126 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr224PSE(S) Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 131 -> 202 Target range: 45958 -> 45745 132 : PheLeuThrMetCysIleIleMetLeuMetSerLeuMetSerPheIleLeuAspIleVal : 151 !:!:!! !:!!! !:!:.!! ! ! !!|||!!: !!||||||||||||:!!:!! TyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeuAspLeuIle 45958 : TACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTGGACCTAATT : 45901 152 : LeuProLeuAsnGluSerArgProValLeuLeuProTyrProSerTyrTyrPheValAsp : 171 ! !||||||||||||||||||||| !|||! ! !!||| !:!!|||! !!:! !!:!! SerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyrCysTyrPheAsn 45900 : TCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTACTGTTACTTCAAT : 45841 172 : AlaGluGluTyrValPheGlnIlePheSerHisThrIleValAlaTrpPhePheLeuGly : 191 !!!!:!!:||| !!:! ! :!! ! .!!:!!|||! !!.!..! .!. !||| ProAspAspTyrTyrTyrTyrValValGlyTyrThrSerAlaCysIleGlyMetAlaGly 45840 : CCGGACGACTACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATAGGAATGGCCGGA : 45781 192 : IleGlyIleMetAlaHisAspGlyMetPheIle : 202 :!!! !:!!:!:!.! !||| !!!:.!.||| LeuValLeuValGlyAlaAspIleIleMetIle 45780 : CTCGTGCTTGTCGGCGCTGACATTATTATGATA : 45746 vulgar: CbirOr224PSE(S) 131 202 . KQ414772.1 45958 45745 - 105 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45746 45958 105 - . gene_id 2 ; sequence CbirOr224PSE(S) ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45746 45958 . - . KQ414772.1 exonerate:protein2genome:local exon 45746 45958 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45746 45958 105 - . alignment_id 2 ; Query CbirOr224PSE(S) ; Align 45959 132 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 170 Query range: 135 -> 215 Target range: 29595 -> 29355 136 : ValPheValSerIleSerLeuIleProGlnIleLeuAspLeuIleAlaProLeuAsnGlu : 155 :!!|||..!|||:!::!!:!!! !|||!:::!!||||||||||||:!!||| !|||||| IlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGlu 29595 : ATATTCACCTCAGTGGCGATAACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAA : 29538 156 : SerArgProIleLeuLeuProTyrGluAlaTyrTyrPheValAspGluGluGluTyrPhe : 175 |||||| !:!: !!!! !||| ||||||||| !:!!||||||||||||:!!!:! SerArgGlyValGlyPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyr 29537 : TCGCGCGGAGTGGGCTTCATTTATCCTGCATACTACGGTCTTGACGAAGAGGAGCATTAC : 29478 176 : PheTyrIlePhePheHisAlaValValAlaLeuGluIleAlaIleThrGlyLeuLeuAla : 195 !:!|||:!:.!. !||| !:!! !!.!:!! :!!!.!.!! !! !! !:!!:!! TyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIleSer 29477 : TACTATCTGATGGGTCACATGCTTTCCGTGATAACCGTCGTGTTTTTCGTCTACATCTCC : 29418 196 : HisAspCysMetLeuLeuThrTyrValGlnHisValCysSerIlePheAlaIleAlaGly : 215 !||| !!:! !:!!!.! !|||||||||!.!|||.!!:!!!!. !:!!:!!||| CysAspThrIleTyrMetAsnValValGlnHisAlaCysGlyLeuLeuAsnValSerGly 29417 : TGTGACACGATCTATATGAATGTCGTGCAACACGCGTGTGGATTATTGAACGTCTCTGGG : 29358 vulgar: CbirOr229 135 215 . KQ414772.1 29595 29355 - 170 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29356 29595 170 - . gene_id 1 ; sequence CbirOr229 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29356 29595 . - . KQ414772.1 exonerate:protein2genome:local exon 29356 29595 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 29356 29595 170 - . alignment_id 1 ; Query CbirOr229 ; Align 29596 136 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 164 Query range: 135 -> 215 Target range: 38009 -> 37769 136 : ValPheValSerIleSerLeuIleProGlnIleLeuAspLeuIleAlaProLeuAsnGlu : 155 :!!|||..!|||:!::!!:!!! |||!:::!!||||||||||||:!!||| !|||||| IlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGlu 38009 : ATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAA : 37952 156 : SerArgProIleLeuLeuProTyrGluAlaTyrTyrPheValAspGluGluGluTyrPhe : 175 |||||| !:!! !!!! !||| ||||||||| !:!!||||||||||||:!!!:! SerArgGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyr 37951 : TCGCGTGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAGGAACATTAT : 37892 176 : PheTyrIlePhePheHisAlaValValAlaLeuGluIleAlaIleThrGlyLeuLeuAla : 195 !:! !:!:.!. !||| !:!! !!.!:!! :!!!.!.!! !! !! !:!!:!! TyrIleLeuMetGlyHisMetLeuCysValIleThrValValPhePheValTyrIleSer 37891 : TACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTGTACATCTCC : 37832 196 : HisAspCysMetLeuLeuThrTyrValGlnHisValCysSerIlePheAlaIleAlaGly : 215 !||| !!:! !:!!!:! !|||||||||!.!|||.!!:!!.!. !:!!:!!||| CysAspThrIleTyrMetSerIleValGlnHisAlaCysGlyLeuLeuAsnValSerGly 37831 : TGTGACACGATCTACATGAGCATCGTTCAACACGCGTGCGGATTACTGAACGTCTCTGGG : 37772 vulgar: CbirOr229 135 215 . KQ414772.1 38009 37769 - 164 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37770 38009 164 - . gene_id 2 ; sequence CbirOr229 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37770 38009 . - . KQ414772.1 exonerate:protein2genome:local exon 37770 38009 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 37770 38009 164 - . alignment_id 2 ; Query CbirOr229 ; Align 38010 136 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 158 Query range: 135 -> 215 Target range: 24416 -> 24176 136 : ValPheValSerIleSerLeuIleProGlnIleLeuAspLeuIleAlaProLeuAsnGlu : 155 :!!|||..!:!!:!::!!:!!! !|||!:::!!||||||||||||:!!||| !|||||| LeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGlu 24416 : CTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAA : 24359 156 : SerArgProIleLeuLeuProTyrGluAlaTyrTyrPheValAspGluGluGluTyrPhe : 175 |||||| !:!: !!!! !||| ||| !!||| !|||||||||||||||:!!!:! SerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyr 24358 : TCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTAC : 24299 176 : PheTyrIlePhePheHisAlaValValAlaLeuGluIleAlaIleThrGlyLeuLeuAla : 195 !:!|||:!:.!. !||| !:!! !!.!:!! :!!!.!.!! !! !! !:!!:!! TyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIleSer 24298 : TACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCC : 24239 196 : HisAspCysMetLeuLeuThrTyrValGlnHisValCysSerIlePheAlaIleAlaGly : 215 !||| !!:! !:!!!.! !|||||||||!.!|||.!!:!!!!. !:!!:!!||| CysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSerGly 24238 : TGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCTGGG : 24179 vulgar: CbirOr229 135 215 . KQ414772.1 24416 24176 - 158 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24177 24416 158 - . gene_id 3 ; sequence CbirOr229 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24177 24416 . - . KQ414772.1 exonerate:protein2genome:local exon 24177 24416 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 24177 24416 158 - . alignment_id 3 ; Query CbirOr229 ; Align 24417 136 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 154 Query range: 135 -> 215 Target range: 14133 -> 13893 136 : ValPheValSerIleSerLeuIleProGlnIleLeuAspLeuIleAlaProLeuAsnGlu : 155 :!!||||||!!!! !!:!!! !|||!!.|||||||||:!!:!! !||| !|||||| LeuPheValThrThrProValThrProHisIleLeuAspIleLeuLeuProLysAsnGlu 14133 : CTGTTCGTGACCACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAGAACGAG : 14076 156 : SerArgProIleLeuLeuProTyrGluAlaTyrTyrPheValAspGluGluGluTyrPhe : 175 |||||| !:!! !! ! !||| !||||||||||||..!||||||.!.:!!||| ! SerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAsp 14075 : TCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGAC : 14016 176 : PheTyrIlePhePheHisAlaValValAlaLeuGluIleAlaIleThrGlyLeuLeuAla : 195 ! ||||||.!! ||| !!.! !!.!:!! :!:!.!.!! !! !! !:!!||| ValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrValAla 14015 : GTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCT : 13956 196 : HisAspCysMetLeuLeuThrTyrValGlnHisValCysSerIlePheAlaIleAlaGly : 215 !||| !! ! !:!! ! !|||||||||! !|||.!!:!:!!.|||:!::!!||| CysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly 13955 : TGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGg : 13896 vulgar: CbirOr229 135 215 . KQ414772.1 14133 13893 - 154 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13894 14133 154 - . gene_id 4 ; sequence CbirOr229 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13894 14133 . - . KQ414772.1 exonerate:protein2genome:local exon 13894 14133 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13894 14133 154 - . alignment_id 4 ; Query CbirOr229 ; Align 14134 136 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 143 Query range: 124 -> 215 Target range: 18075 -> 17802 125 : IlePheMetLeuTrpCysTyrIleIleSerProValPheValSerIleSerLeuIlePro : 144 |||||| :!! ...|||||| !||| !:!!|||:!!..!:!: !!! ! !! IlePheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpSerThr 18075 : ATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGTCGACC : 18018 145 : GlnIleLeuAspLeuIleAlaProLeuAsnGluSerArgProIleLeuLeuProTyrGlu : 164 !:!:!::!!:!!! ! ! ! !!! !||| !!!!! ! !:!:! !!!! ! ArgLeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuGlnPheValIlePro 18017 : CGATTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCC : 17958 165 : AlaTyrTyrPheValAspGluGluGluTyrPhePheTyrIlePhePheHisAlaValVal : 184 !.!||||||||||||||||||! !||||||!:!!:!||||||.!..!!|||!.!..! ! GlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCys 17957 : GGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGC : 17898 185 : AlaLeuGluIleAlaIleThrGlyLeuLeuAlaHisAspCysMetLeuLeuThrTyrVal : 204 .!!:!! !|||!.!:!:..!! !! !! !||| !||| !! ! !:!!..! ||| ThrIleLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuVal 17897 : ACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTG : 17838 205 : GlnHisValCysSerIlePheAlaIleAlaGly : 215 ||||||..!|||.!!:!:||||||:!:|||||| GlnHisThrCysGlyLeuPheAlaValAlaGly 17837 : CAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 17803 vulgar: CbirOr229 124 215 . KQ414772.1 18075 17802 - 143 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17803 18075 143 - . gene_id 5 ; sequence CbirOr229 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17803 18075 . - . KQ414772.1 exonerate:protein2genome:local exon 17803 18075 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17803 18075 143 - . alignment_id 5 ; Query CbirOr229 ; Align 18076 125 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 137 Query range: 130 -> 205 Target range: 45958 -> 45733 131 : TyrIleIleSerProValPheValSerIleSerLeuIleProGlnIleLeuAspLeuIle : 150 |||||| ! ! !!|||||| !!!! !!||||||||| ||||||||||||||| TyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeuAspLeuIle 45958 : TACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTGGACCTAATT : 45901 151 : AlaProLeuAsnGluSerArgProIleLeuLeuProTyrGluAlaTyrTyrPheValAsp : 170 :!!||||||||||||||||||||| !|||! ! !!|||:!!||||||! !!:! !!:!! SerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyrCysTyrPheAsn 45900 : TCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTACTGTTACTTCAAT : 45841 171 : GluGluGluTyrPhePheTyrIlePhePheHisAlaValValAlaLeuGluIleAlaIle : 190 !!!:!!:|||!:!!:!|||:!! ! :!!.!! !!.!..!:!!! !!!:||| ! ProAspAspTyrTyrTyrTyrValValGlyTyrThrSerAlaCysIleGlyMetAlaGly 45840 : CCGGACGACTACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATAGGAATGGCCGGA : 45781 191 : ThrGlyLeuLeuAlaHisAspCysMetLeuLeuThrTyrValGln : 205 !! !|||:!!!.! !||| !!!::!!:!! ! !|||!:: LeuValLeuValGlyAlaAspIleIleMetIleHisLeuValArg 45780 : CTCGTGCTTGTCGGCGCTGACATTATTATGATACATCTTGTACGT : 45734 vulgar: CbirOr229 130 205 . KQ414772.1 45958 45733 - 137 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45734 45958 137 - . gene_id 6 ; sequence CbirOr229 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45734 45958 . - . KQ414772.1 exonerate:protein2genome:local exon 45734 45958 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45734 45958 137 - . alignment_id 6 ; Query CbirOr229 ; Align 45959 131 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr225 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 323 -> 373 Target range: 1345564 -> 1345714 324 : SerPheGlnIleArgAspArgIleTyrHisSerSerTrpTyrAsnValSerThrLy : 342 |||! !:!!!!:!:!.!. ! !||| !|||!:!||||||:!!:!! !! !|| SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 343 : sSerGlnLysMetAlaMetIleValMetAlaArgSerArgArgProAlaPhePheS : 361 |! ! !::! ! !!!:.!! !!!:|||||||||!:!!:!|||:!!!:!.!.! sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 362 : erAlaGlyLysValTyrIlePheSerLeuGluSerPhe : 373 !!||||||||| !!|||:!:||||||||||||!!!||| hrAlaGlyLysPheTyrValPheSerLeuGluThrPhe 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTC : 1345714 vulgar: CbirOr225 323 373 . KQ414782.1 1345564 1345714 + 114 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345714 114 + . gene_id 1 ; sequence CbirOr225 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345714 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345714 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345714 114 + . alignment_id 1 ; Query CbirOr225 ; Align 1345565 324 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr219 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 334 -> 387 Target range: 1345564 -> 1345723 335 : SerGluGluValHisGluSerAlaTyrAsnThrLysTrpTyrAsnMetProThrAs : 353 |||...|||:!!!!.:!!:!!..!||| !!:!!!.||||||:!!:!:||| !!! SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 354 : nGlnArgLysLeuLeuValMetIleMetMetArgSerArgLysProSerArgIleT : 372 . ! ! !::!! !|||:!!.!. !!!: ||||||!:!||||||||| !:!!| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 373 : hrAlaGlyLysLeuValAsnLeuSerTyrValAsnPheSerAlaVal : 387 |||||||||||!!! ! !!!|||! ! !!..|||.!! !||| hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIleVal 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCGTG : 1345723 vulgar: CbirOr219 334 387 . KQ414782.1 1345564 1345723 + 101 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345723 101 + . gene_id 1 ; sequence CbirOr219 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345723 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345723 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345723 101 + . alignment_id 1 ; Query CbirOr219 ; Align 1345565 335 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr227 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 155 Query range: 126 -> 215 Target range: 26255 -> 25988 127 : ThrIleTyrCysPheLeuThrThrTyrLeuPheIleLeuMetSerLeuGluProPheIle : 146 |||:!::!! ! ||| !.!! !||||||!!:! !:!! !!!!!! ! !! ||| ThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIle 26255 : ACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATT : 26198 147 : LeuAspIleIleLeuProLeuAsnGluSerArgProIleLeuProProTyrProSerTyr : 166 |||||||||:!!:!!||||||||||||!!!||| !! ||| ! !||||||:!!||| LeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyr 26197 : CTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTAC : 26138 167 : TyrPheValAspThrGluGluTyrPhePheGlnIlePheLeuHisThrIleMetValTrp : 186 |||||||||||| !!!::!!||| !!:! !||| ! !|||! ! !:!:||| ! TyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValVal 26137 : TATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTG : 26078 187 : ThrPheIleValIleGlyIleGlnAlaHisAspCysMetPheIleThrTyrValGluHis : 206 ..!.!.:!!:!! !! !.!! ||| !|||..!! !:!:!: ! !|||:!!||| ValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHis 26077 : GTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACAC : 26018 207 : IleCysSerSerPheAlaValValGly : 215 !|||.!!! !!!.|||:!!!.!||| AlaCysGlyLeuLeuAlaIleAlaGly 26017 : GCTTGCGGATTGTTGGCCATTGCAGGG : 25989 vulgar: CbirOr227 126 215 . LHQN01017803.1 26255 25988 - 155 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26255 155 - . gene_id 1 ; sequence CbirOr227 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26255 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26255 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26255 155 - . alignment_id 1 ; Query CbirOr227 ; Align 26256 127 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr227 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 142 Query range: 135 -> 215 Target range: 14170 -> 13930 136 : LeuPheIleLeuMetSerLeuGluProPheIleLeuAspIleIleLeuProLeuAsnGlu : 155 ||||||:!:! !! ! !!:!! !||| !||||||||||||:!!|||||| !|||||| LeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProLysAsnGlu 14170 : CTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAGAACGAG : 14113 156 : SerArgProIleLeuProProTyrProSerTyrTyrPheValAspThrGluGluTyrPhe : 175 |||||| !:!! ! ! !||||||:!!|||||||||..!||| !.!.:!!||| ! SerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAsp 14112 : TCACGAGACGTAGCGTACATTTATCCGGCCTATTATTTCACCGACGAGCATAAGTACGAC : 14053 176 : PheGlnIlePheLeuHisThrIleMetValTrpThrPheIleValIleGlyIleGlnAla : 195 ! ! |||.!! !|||! ! ||| ! ! :!: !! !! ! ! ||| ValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrValAla 14052 : GTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCT : 13993 196 : HisAspCysMetPheIleThrTyrValGluHisIleCysSerSerPheAlaValValGly : 215 !||| !! !:!||| ! !|||:!!||| !|||.!!! !!!.|||||| !||| CysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly 13992 : TGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGg : 13933 vulgar: CbirOr227 135 215 . LHQN01017803.1 14170 13930 - 142 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13931 14170 142 - . gene_id 2 ; sequence CbirOr227 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13931 14170 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13931 14170 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13931 14170 142 - . alignment_id 2 ; Query CbirOr227 ; Align 14171 136 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr227 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 124 -> 215 Target range: 18459 -> 18186 125 : LeuTyrThrIleTyrCysPheLeuThrThrTyrLeuPheIleLeuMetSerLeuGluPro : 144 :!!!:! !!:!: !!...!:!:!! !:!!!:!|||||||||! !:!! !!! !..! !! IlePheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpSerThr 18459 : ATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGTCGACC : 18402 145 : PheIleLeuAspIleIleLeuProLeuAsnGluSerArgProIleLeuProProTyrPro : 164 :!::!!:!! ! ! !!! !||| !!!!! ! !:!:! ! ! ! ||| ArgLeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuProValValValPro 18401 : CGATTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCC : 18342 165 : SerTyrTyrPheValAspThrGluGluTyrPhePheGlnIlePheLeuHisThrIleMet : 184 .!!||||||||||||||| !! !||||||!:!!:! ! |||.!.|||||| !! GlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCys 18341 : GGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGC : 18282 185 : ValTrpThrPheIleValIleGlyIleGlnAlaHisAspCysMetPheIleThrTyrVal : 204 ..! !.!!:!!|||:!:! ! ! ||| !||| !! !:!!!:..! ||| ThrIleLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuVal 18281 : ACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTG : 18222 205 : GluHisIleCysSerSerPheAlaValValGly : 215 :!!|||! !|||.!! !|||||||||!.!||| GlnHisThrCysGlyLeuPheAlaValAlaGly 18221 : CAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 18187 vulgar: CbirOr227 124 215 . LHQN01017803.1 18459 18186 - 120 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18187 18459 120 - . gene_id 3 ; sequence CbirOr227 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18187 18459 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18187 18459 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18187 18459 120 - . alignment_id 3 ; Query CbirOr227 ; Align 18460 125 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr227 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 121 -> 182 Target range: 33732 -> 33549 122 : PheSerLeuLeuTyrThrIleTyrCysPheLeuThrThrTyrLeuPheIleLeuMetSer : 141 !!.|||:!!! ! !:!!:!! ! !:!:!! !..!! !:!!||| ! ! ! !! LeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThrAlaPro 33732 : TTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCC : 33675 142 : LeuGluProPheIleLeuAspIleIleLeuProLeuAsnGluSerArgProIleLeuPro : 161 ||| !|||||||||||||||:!!|||! !||||||||||||||||||||| !||| ! LeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArgLeuTyr 33674 : CTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTAC : 33615 162 : ProTyrProSerTyrTyrPheValAspThrGluGluTyrPhePheGlnIlePheLeuHis : 181 !!||| !:!!|||! !!:! !!:!! !!!!:!!:|||!:!!:! ! :!! ! !:!! AlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValValGlyTyr 33614 : GCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTGGGGTAC : 33555 182 : Thr : 182 ||| Thr 33554 : ACC : 33550 vulgar: CbirOr227 121 182 . LHQN01017803.1 33732 33549 - 107 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33550 33732 107 - . gene_id 4 ; sequence CbirOr227 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33550 33732 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33550 33732 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33550 33732 107 - . alignment_id 4 ; Query CbirOr227 ; Align 33733 122 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 222 Query range: 87 -> 215 Target range: 26460 -> 25988 88 : ArgIleLysTyrLeuThrAspHisLeuLeuAspAspTrpLysLysLeuGluSerProGlu : 107 !:!:!:||||||||| !! ! :!!! !!!:||||||!:! :!! !||| !!!: GlnLeuLysTyrLeuLeuGlyLysIleTyrGluAspTrpArgAlaMetThrSerGluAsp 26460 : CAGCTGAAATATCTTCTTGGAAAGATCTACGAAGACTGGAGAGCCATGACGTCGGAGGAT : 26403 108 : GluTyrLysIleMetLysAlaTyrAlaAlaAsnGlyArgLeuPheAlaLeuIlePheMet : 127 |||||||||||||||! ! !||||||! !!!.|||! !!!! !!.!:!!:!!!:!!!: GluTyrLysIleMetThrLysTyrAlaGluLysGlyIlePheSerValIleLeuTyrIle 26402 : GAGTACAAGATCATGACGAAATACGCGGAGAAAGGGATTTTCAGTGTCATACTCTATATT : 26343 128 : {L} >>>> Target Intron 1 >>>> {eu}TrpCysTyrIleIleSerProVal : 136 {|} 88 bp {||} ! :!! !:!! !!:!! {L}++ ++{eu}HisIleSerLeuCysAlaAlaLeu 26342 : {C}gt.........................ag{TG}CATATATCGTTATGCGCCGCTCTA : 26228 137 : PheValSerIleSerLeuIleProGlnIleLeuAspLeuIleAlaProLeuAsnGluSer : 156 |||:!!!!!:!: !!!!!:!: !!! !|||||||||:!!:!! !||||||||||||!!! PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThr 26227 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACG : 26168 157 : ArgProIleLeuLeuProTyrGluAlaTyrTyrPheValAspGluGluGluTyrPhePhe : 176 ||| !! |||!!! !||| !|||||||||||||||||||||!!::!!||| !!:! ArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyr 26167 : CGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTAC : 26108 177 : TyrIlePhePheHisAlaValValAlaLeuGluIleAlaIleThrGlyLeuLeuAlaHis : 196 ! ||| ! ||| ! !:!!!.!:!!! !!!: !|||:!!! !!!!! !||| ! LeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCys 26107 : TTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGC : 26048 197 : AspCysMetLeuLeuThrTyrValGlnHisValCysSerIlePheAlaIleAlaGly : 215 |||..!! ! !:!! ! !|||||||||!.!|||.!!:!:!!.|||||||||||| AspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 26047 : GATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 25989 vulgar: CbirOr229 87 215 . LHQN01017803.1 26460 25988 - 222 M 40 120 S 0 1 5 0 2 I 0 84 3 0 2 S 1 2 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26460 222 - . gene_id 1 ; sequence CbirOr229 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 26340 26460 . - . LHQN01017803.1 exonerate:protein2genome:local exon 26340 26460 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 26338 26339 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 26252 26339 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 26252 26253 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 25989 26251 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26251 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26460 222 - . alignment_id 1 ; Query CbirOr229 ; Align 26461 88 120 ; Align 26250 129 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 158 Query range: 135 -> 215 Target range: 29610 -> 29370 136 : ValPheValSerIleSerLeuIleProGlnIleLeuAspLeuIleAlaProLeuAsnGlu : 155 :!!|||..!:!!:!::!!:!!! !|||!:::!!||||||||||||:!!||| !|||||| LeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGlu 29610 : CTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAA : 29553 156 : SerArgProIleLeuLeuProTyrGluAlaTyrTyrPheValAspGluGluGluTyrPhe : 175 |||||| !:!: !!!! !||| ||| !!||| !|||||||||||||||:!!!:! SerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyr 29552 : TCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTAC : 29493 176 : PheTyrIlePhePheHisAlaValValAlaLeuGluIleAlaIleThrGlyLeuLeuAla : 195 !:!|||:!:.!. !||| !:!! !!.!:!! :!!!.!.!! !! !! !:!!:!! TyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIleSer 29492 : TACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCC : 29433 196 : HisAspCysMetLeuLeuThrTyrValGlnHisValCysSerIlePheAlaIleAlaGly : 215 !||| !!:! !:!!!.! !|||||||||!.!|||.!!:!!!!. !:!!:!!||| CysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSerGly 29432 : TGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCTGGG : 29373 vulgar: CbirOr229 135 215 . LHQN01017803.1 29610 29370 - 158 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29371 29610 158 - . gene_id 2 ; sequence CbirOr229 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29371 29610 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29371 29610 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 29371 29610 158 - . alignment_id 2 ; Query CbirOr229 ; Align 29611 136 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 157 Query range: 135 -> 215 Target range: 14170 -> 13930 136 : ValPheValSerIleSerLeuIleProGlnIleLeuAspLeuIleAlaProLeuAsnGlu : 155 :!!|||||||||! !!:!!! !|||!!.|||||||||:!!:!! !||| !|||||| LeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProLysAsnGlu 14170 : CTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAGAACGAG : 14113 156 : SerArgProIleLeuLeuProTyrGluAlaTyrTyrPheValAspGluGluGluTyrPhe : 175 |||||| !:!! !! ! !||| !||||||||||||..!||||||.!.:!!||| ! SerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAsp 14112 : TCACGAGACGTAGCGTACATTTATCCGGCCTATTATTTCACCGACGAGCATAAGTACGAC : 14053 176 : PheTyrIlePhePheHisAlaValValAlaLeuGluIleAlaIleThrGlyLeuLeuAla : 195 ! ||||||.!! ||| !!.! !!.!:!! :!:!.!.!! !! !! !:!!||| ValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrValAla 14052 : GTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCT : 13993 196 : HisAspCysMetLeuLeuThrTyrValGlnHisValCysSerIlePheAlaIleAlaGly : 215 !||| !! ! !:!! ! !|||||||||! !|||.!!:!:!!.|||:!::!!||| CysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly 13992 : TGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGg : 13933 vulgar: CbirOr229 135 215 . LHQN01017803.1 14170 13930 - 157 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13931 14170 157 - . gene_id 3 ; sequence CbirOr229 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13931 14170 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13931 14170 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13931 14170 157 - . alignment_id 3 ; Query CbirOr229 ; Align 14171 136 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 143 Query range: 124 -> 215 Target range: 18459 -> 18186 125 : IlePheMetLeuTrpCysTyrIleIleSerProValPheValSerIleSerLeuIlePro : 144 |||||| :!! ...|||||| !||| !:!!|||:!!..!:!: !!! ! !! IlePheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpSerThr 18459 : ATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGTCGACC : 18402 145 : GlnIleLeuAspLeuIleAlaProLeuAsnGluSerArgProIleLeuLeuProTyrGlu : 164 !:!:!::!!:!!! ! ! ! !!! !||| !!!!! ! !:!:! !:!! ! ArgLeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuProValValValPro 18401 : CGATTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCC : 18342 165 : AlaTyrTyrPheValAspGluGluGluTyrPhePheTyrIlePhePheHisAlaValVal : 184 !.!||||||||||||||||||! !||||||!:!!:!||||||.!..!!|||!.!..! ! GlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCys 18341 : GGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGC : 18282 185 : AlaLeuGluIleAlaIleThrGlyLeuLeuAlaHisAspCysMetLeuLeuThrTyrVal : 204 .!!:!! !|||!.!:!:..!! !! !! !||| !||| !! ! !:!!..! ||| ThrIleLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuVal 18281 : ACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTG : 18222 205 : GlnHisValCysSerIlePheAlaIleAlaGly : 215 ||||||..!|||.!!:!:||||||:!:|||||| GlnHisThrCysGlyLeuPheAlaValAlaGly 18221 : CAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 18187 vulgar: CbirOr229 124 215 . LHQN01017803.1 18459 18186 - 143 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18187 18459 143 - . gene_id 4 ; sequence CbirOr229 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18187 18459 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18187 18459 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18187 18459 143 - . alignment_id 4 ; Query CbirOr229 ; Align 18460 125 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 137 Query range: 130 -> 205 Target range: 33705 -> 33480 131 : TyrIleIleSerProValPheValSerIleSerLeuIleProGlnIleLeuAspLeuIle : 150 |||||| ! ! !!|||||| !!!! !!||||||||| ||||||||||||||| TyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeuAspLeuIle 33705 : TACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTGGACCTAATT : 33648 151 : AlaProLeuAsnGluSerArgProIleLeuLeuProTyrGluAlaTyrTyrPheValAsp : 170 :!!||||||||||||||||||||| !|||! ! !!|||:!!||||||! !!:! !!:!! SerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyrCysTyrPheAsn 33647 : TCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTACTGTTACTTCAAT : 33588 171 : GluGluGluTyrPhePheTyrIlePhePheHisAlaValValAlaLeuGluIleAlaIle : 190 !!!:!!:|||!:!!:!|||:!! ! :!!.!! !!.!..!:!!! !!!:||| ! ProAspAspTyrTyrTyrTyrValValGlyTyrThrSerAlaCysIleGlyMetAlaGly 33587 : CCGGACGACTACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATAGGAATGGCCGGA : 33528 191 : ThrGlyLeuLeuAlaHisAspCysMetLeuLeuThrTyrValGln : 205 !! !|||:!!!.! !||| !!!::!!:!! ! !|||!:: LeuValLeuValGlyAlaAspIleIleMetIleHisLeuValArg 33527 : CTCGTGCTTGTCGGCGCTGACATTATTATGATACATCTTGTACGT : 33481 vulgar: CbirOr229 130 205 . LHQN01017803.1 33705 33480 - 137 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33481 33705 137 - . gene_id 5 ; sequence CbirOr229 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33481 33705 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33481 33705 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33481 33705 137 - . alignment_id 5 ; Query CbirOr229 ; Align 33706 131 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr222 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 153 -> 229 Target range: 26168 -> 25940 154 : ThrArgProLeuLeuLeuHisLysValLysTyrTyrTyrIleAspIleAspLysTyrTyr : 173 |||||| !!! !|||!!! ! ! ! ||||||!:!:!!||| |||||||||:!! ThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHis 26168 : ACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCAT : 26111 174 : PheLeuIleTrpIleHisGlyTyrLeuAlaSerLeuIleCysGlyThrTrpIleIleAla : 193 !:!|||||| ||| !||||||!.! !:!!!!: ! !:!! .!! !||| TyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 26110 : TACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 26051 194 : AlaAspAlaThrPheMetIlePheValGlnHisAlaCysGlyLeuPheIleValThrThr : 213 ..!||||||!.!!:!:!! ! !|||||||||||||||||||||!!. !:!!.!! ! CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 26050 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 25991 214 : ValArgIleGluArgValIleGlnGlnLysGlyCysLeuThrArgAsp : 229 ! !:!!:!! !! !:!!..!:!!!!.|||! !||| !|||:!! ***LeuValGlnGlyGlnLeuMetGluAsnGlyPheLeuTyrArgAsn 25990 : TAATTAGTTCAAGGACAATTAATGGAAAATGGTTTTCTTTATAGAAAT : 25941 vulgar: CbirOr222 153 229 . LHQN01017803.1 26168 25940 - 124 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25941 26168 124 - . gene_id 1 ; sequence CbirOr222 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25941 26168 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25941 26168 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25941 26168 124 - . alignment_id 1 ; Query CbirOr222 ; Align 26169 154 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr222 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 163 -> 211 Target range: 18336 -> 18192 164 : TyrTyrTyrIleAspIleAspLysTyrTyrPheLeuIleTrpIleHisGlyTyrLeuAla : 183 ||||||!:!:!!||| !! :!!||||||!:!! !||| :!!|||||| ! !.!! TyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThr 18336 : TATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACA : 18279 184 : SerLeuIleCysGlyThrTrpIleIleAlaAlaAspAlaThrPheMetIlePheValGln : 203 ! !|||||| ! !..! ! ! !|||..!|||.!!!:!!:!|||:!!.!.|||||| IleLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGln 18278 : ATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAA : 18219 204 : HisAlaCysGlyLeuPheIleVal : 211 |||.!!|||||||||||| !||| HisThrCysGlyLeuPheAlaVal 18218 : CACACTTGCGGACTGTTCGCCGTG : 18193 vulgar: CbirOr222 163 211 . LHQN01017803.1 18336 18192 - 115 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18193 18336 115 - . gene_id 2 ; sequence CbirOr222 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18193 18336 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18193 18336 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18193 18336 115 - . alignment_id 2 ; Query CbirOr222 ; Align 18337 164 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr223 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 134 Query range: 162 -> 213 Target range: 18333 -> 18180 163 : TyrTyrIleAspMetAspLysTyrTyrPheProIleLeuIleHisGlyTyrLeuThrAla : 182 |||!:!:!!||| ! :!!||||||!:! !|||:!!:!!|||||| ! !||| ! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIle 18333 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATT : 18276 183 : IleValCysIleSerIleAlaIleAlaThrAspThrMetTyrValIleMetValGlnHis : 202 :!::!! :!: !:!: ! !||| !||||||! |||:!!:!!:!!||||||||| LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 18275 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 18216 203 : ValCysGlyLeuPheThrIleIleGlyGlnGlu : 213 ..!||||||||||||.!!:!: !||| !||| ThrCysGlyLeuPheAlaValAlaGly***Glu 18215 : ACTTGCGGACTGTTCGCCGTGGCCGGGTGAGAA : 18181 vulgar: CbirOr223 162 213 . LHQN01017803.1 18333 18180 - 134 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18181 18333 134 - . gene_id 1 ; sequence CbirOr223 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18181 18333 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18181 18333 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18181 18333 134 - . alignment_id 1 ; Query CbirOr223 ; Align 18334 163 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr223 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 154 -> 211 Target range: 26159 -> 25988 155 : ArgProLeuLeuHisArgValGluTyrTyrIleAspMetAspLysTyrTyrPheProIle : 174 ||| !!!!:!!:!!! !!.! ! |||!:!:!!||| !|||||||||:!!!:! !||| ArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIle 26159 : CGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATC : 26102 175 : LeuIleHisGlyTyrLeuThrAlaIleValCysIleSerIleAlaIleAlaThrAspThr : 194 :!! ||| !||||||..!!.!:!!:!! !||||||:!! ! !||| !|||.!! ValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 26101 : GTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 26042 195 : MetTyrValIleMetValGlnHisValCysGlyLeuPheThrIleIleGly : 211 ! |||||| ! |||||||||!.!|||||||||!!..!!||| !||| AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 26041 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 25989 vulgar: CbirOr223 154 211 . LHQN01017803.1 26159 25988 - 127 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26159 127 - . gene_id 2 ; sequence CbirOr223 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26159 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26159 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26159 127 - . alignment_id 2 ; Query CbirOr223 ; Align 26160 155 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr226 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 134 Query range: 126 -> 215 Target range: 26255 -> 25988 127 : SerValTyrCysThrLeuSerLeuPheLeuPheLeuSerLeuSerLeuIleProPheAla : 146 !!!|||:!! :!!|||!!! ! !||||||:!!!!!||| !!!!!:!: !! ! ThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIle 26255 : ACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATT : 26198 147 : LeuAspIleIleLeuProLeuAsnGluSerArgProIleValSerProTyrProAlaAsn : 166 |||||||||:!!:!!||||||||||||!!!||| !! :!!! ! !||||||||| !! LeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyr 26197 : CTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTAC : 26138 167 : TyrPheValAspValArgGluHisPhePheLysIleTyrTrpHisSerIleLeuAlaTrp : 186 ||||||||||||! ! !:!!:!! !!:! !||| !!|||! ! !|||!.! ! TyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValVal 26137 : TATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTG : 26078 187 : GluIleIleIleIleGlyIleIleThrTyrMetCysMetTyrValThrTyrIleGluHis : 206 ! !!!::!!||| !! !.!! !.!!! ! ..!! |||||| ! !:!::!!||| ValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHis 26077 : GTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACAC : 26018 207 : ValCysSerIlePheAlaThrIleGly : 215 !.!|||.!!:!:!!.|||! ! !||| AlaCysGlyLeuLeuAlaIleAlaGly 26017 : GCTTGCGGATTGTTGGCCATTGCAGGG : 25989 vulgar: CbirOr226 126 215 . LHQN01017803.1 26255 25988 - 134 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26255 134 - . gene_id 1 ; sequence CbirOr226 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26255 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26255 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26255 134 - . alignment_id 1 ; Query CbirOr226 ; Align 26256 127 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr226 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 131 -> 218 Target range: 14182 -> 13921 132 : LeuSerLeuPheLeuPheLeuSerLeuSerLeuIleProPheAlaLeuAspIleIleLeu : 151 :!!!!!:!!.!!||||||:!!||| ! !!:!!! !||| ! !|||||||||:!!||| ValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeu 14182 : GTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTA : 14125 152 : ProLeuAsnGluSerArgProIleValSerProTyrProAlaAsnTyrPheValAspVal : 171 ||| !|||||||||||| !:!!!.!! ! !||||||||| !!||||||..!|||! ! ProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGlu 14124 : CCGAAGAACGAGTCACGAGACGTAGCGTACATTTATCCGGCCTATTATTTCACCGACGAG : 14065 172 : ArgGluHisPhePheLysIleTyrTrpHisSerIleLeuAlaTrpGluIleIleIleIle : 191 !.!:!!:!! ! ! ! ||| ! !|||! ! ! !!.! :!::!:.!! ! HisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyr 14064 : CATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTAC : 14005 192 : GlyIleIleThrTyrMetCysMetTyrValThrTyrIleGluHisValCysSerIlePhe : 211 ! ! !:!!.!!! ! !! |||:!! ! !:!::!!|||! !|||.!!:!:!!. ValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeu 14004 : GTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTG : 13945 212 : AlaThrIleGlyPheArgIle : 218 |||..! !||| :::||| AlaValSerGly***LysIle 13944 : GCCGTGTCCGGgtaaaaaatt : 13922 vulgar: CbirOr226 131 218 . LHQN01017803.1 14182 13921 - 125 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13922 14182 125 - . gene_id 2 ; sequence CbirOr226 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13922 14182 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13922 14182 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13922 14182 125 - . alignment_id 2 ; Query CbirOr226 ; Align 14183 132 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr226 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 332 -> 388 Target range: 17163 -> 16912 333 : TyrAsnSerTyrTrpTyrArgGluSerThrLysSerGlnLysLeuIleMetLeuMetMet : 352 |||.!.|||! ||||||! !...|||:!!|||!!!||| !||| !:!!:!! !:!: TyrGluSerLeuTrpTyrThrSerSerSerLysThrGlnAlaLeuTyrValValAlaLeu 17163 : TACGAATCATTATGGTACACAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCGTTA : 17106 353 : MetLysSerLeuGlnProCysCysLeuSerValGlyLysIleTyrIleLeuSerMetGln : 372 !:!!:!||| !||| !||||||!!!!.!||| :!! !|||!:!|||||| ArgArgAsnLeuThrProThrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMetGln 17105 : CGAAGAAACCTAACACCTACCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATGCAA : 17046 373 : SerPheSerThr >>>> Target Intron 1 >>>> IleLeuLysAlaSerValS : 383 ||||||:!! ! 83 bp :!::!!||| !||||||| SerPheAlaGlu++ ++ValValLysMetSerValS 17045 : AGCTTCGCAGAGgt.........................agGTGGTAAAAATGTCCGTTT : 16930 384 : erTyrPheThrMetLeu : 388 |||||!:!|||:!!||| erTyrTyrThrValLeu 16929 : CCTATTATACGGTGTTG : 16913 vulgar: CbirOr226 332 388 . LHQN01017803.1 17163 16912 - 123 M 44 132 5 0 2 I 0 79 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 16913 17163 123 - . gene_id 3 ; sequence CbirOr226 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 17032 17163 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17032 17163 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 17030 17031 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 16949 17031 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 16949 16950 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 16913 16948 . - . LHQN01017803.1 exonerate:protein2genome:local exon 16913 16948 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 16913 17163 123 - . alignment_id 3 ; Query CbirOr226 ; Align 17164 333 132 ; Align 16949 377 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr225 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 126 -> 217 Target range: 18459 -> 18186 127 : IleTyrLeuValTyrCysPheLeuAlaValValIlePheMetSerMetSerLeuValPro : 146 |||!:!! !||| !!...!:!:!!..! ! !!:!:|||!!:..!:!! !!! ! ! !! IlePheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpSerThr 18459 : ATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGTCGACC : 18402 147 : TyrIleLeuAsnIleValArgProLeuAsnGlnSerArgProIleLeuProProTyrArg : 166 :!::!!||| !!:! !!! !||| !!!!! ! !:!:! ! ! ! ! ! ArgLeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuProValValValPro 18401 : CGATTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCC : 18342 167 : GlyTyrTyrPheIleAspSerGlnGluHisPhePheGlnIleLeuTrpHisSerIleVal : 186 ||||||||||||:!!|||..! !|||:!!!:!!:! ! |||:!! |||.!!! ! GlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCys 18341 : GGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGC : 18282 187 : GlyTrpGluValValValAlaAlaValValAlaHisAspSerLeuPheValThrTyrVal : 206 ! !:!!||||||!.!!.! ! !||| !|||!!! !!:!:!!..! ||| ThrIleLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuVal 18281 : ACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTG : 18222 207 : GluHisIleCysSerMetPheAlaLeuIleGly : 217 :!!|||! !|||.!!:!!||||||:!! !||| GlnHisThrCysGlyLeuPheAlaValAlaGly 18221 : CAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 18187 vulgar: CbirOr225 126 217 . LHQN01017803.1 18459 18186 - 113 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18187 18459 113 - . gene_id 1 ; sequence CbirOr225 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18187 18459 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18187 18459 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18187 18459 113 - . alignment_id 1 ; Query CbirOr225 ; Align 18460 127 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr225 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 129 -> 184 Target range: 33714 -> 33549 130 : ValTyrCysPheLeuAlaValValIlePheMetSerMetSerLeuValProTyrIleLeu : 149 ||| ! !:!:!!!.!||| !:!:||| !!! ! !!|||:!!|||!:!|||||| ValThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeu 33714 : GTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTG : 33657 150 : AsnIleValArgProLeuAsnGlnSerArgProIleLeuProProTyrArgGlyTyrTyr : 169 :!!:!!:!! !|||||||||:!!||||||||| !||| ! !!|||!:!!.!|||! ! AspLeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyrCys 33656 : GACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTACTGT : 33597 170 : PheIleAspSerGlnGluHisPhePheGlnIleLeuTrpHisSer : 184 !:!.!!:!! !!.!.!!::!!!:!!:! ! :!!:!! !!:!!!!! TyrPheAsnProAspAspTyrTyrTyrTyrValValGlyTyrThr 33596 : TACTTCAATCCGGACGACTACTATTATTACGTCGTGGGGTACACC : 33550 vulgar: CbirOr225 129 184 . LHQN01017803.1 33714 33549 - 108 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33550 33714 108 - . gene_id 2 ; sequence CbirOr225 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33550 33714 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33550 33714 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33550 33714 108 - . alignment_id 2 ; Query CbirOr225 ; Align 33715 130 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr228 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 168 Query range: 126 -> 215 Target range: 26255 -> 25988 127 : SerLeuTyrCysPheAlaCysLeuAlaLeuPheMetCysAlaSerLeuIleProGlnLeu : 146 !!!:!!:!! ! !||| !||||||||||||||| ! !!!!!:!: !!! !:!! ThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIle 26255 : ACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATT : 26198 147 : LeuAsnValValLeuProLeuAsnGluSerArgProValLeuProProTyrProGlyHis : 166 |||:!!:!!:!!:!!||||||||||||!!!||| !! !||| ! !||||||!.!:!! LeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyr 26197 : CTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTAC : 26138 167 : TyrPheValAspGluGluGluTyrPheLeuHisIlePheCysHisSerIleValAlaTrp : 186 |||||||||||||||!!::!!||| !! ! ||| ! ! |||! ! !:!!!.! ! TyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValVal 26137 : TATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTG : 26078 187 : GluIleAlaMetThrGlyIleValAlaHisAspCysMetPheLeuSerCysValGluHis : 206 ! !!!: !!!::!!! !.!! !||| !|||..!! !:!:!!! !..!|||:!!||| ValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHis 26077 : GTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACAC : 26018 207 : GlyCysSerIlePheAlaValAlaGly : 215 !.!|||.!!:!:!!.|||:!!|||||| AlaCysGlyLeuLeuAlaIleAlaGly 26017 : GCTTGCGGATTGTTGGCCATTGCAGGG : 25989 vulgar: CbirOr228 126 215 . LHQN01017803.1 26255 25988 - 168 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26255 168 - . gene_id 1 ; sequence CbirOr228 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26255 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26255 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26255 168 - . alignment_id 1 ; Query CbirOr228 ; Align 26256 127 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr228 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 125 -> 215 Target range: 18456 -> 18186 126 : TyrSerLeuTyrCysPheAlaCysLeuAlaLeuPheMetCysAlaSerLeuIleProGln : 145 !:! !!:!! !!...!:! !|||! ! !||||||!!: !.! !!! ! !!!:! PheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpSerThrArg 18456 : TTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGTCGACCCGA : 18399 146 : LeuLeuAsnValValLeuProLeuAsnGluSerArgProValLeuProProTyrProGly : 165 |||:!!||| ! ! ! !!! !||| !!!!! ! !:!!! ! ! ! |||||| LeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuProValValValProGly 18398 : TTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGA : 18339 166 : HisTyrPheValAspGluGluGluTyrPheLeuHisIlePheCysHisSerIleValAla : 185 :!!|||||||||||||||! !||||||!:!! !:!!|||.!. !|||.!!! !.!! TyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThr 18338 : TATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACA : 18279 186 : TrpGluIleAlaMetThrGlyIleValAlaHisAspCysMetPheLeuSerCysValGlu : 205 !|||!.!:!!..!! ! ! !||| !||| !! !:!:!! ! |||:!! IleLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGln 18278 : ATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAA : 18219 206 : HisGlyCysSerIlePheAlaValAlaGly : 215 ||| !|||.!!:!:||||||||||||||| HisThrCysGlyLeuPheAlaValAlaGly 18218 : CACACTTGCGGACTGTTCGCCGTGGCCGGG : 18187 vulgar: CbirOr228 125 215 . LHQN01017803.1 18456 18186 - 122 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18187 18456 122 - . gene_id 2 ; sequence CbirOr228 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18187 18456 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18187 18456 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18187 18456 122 - . alignment_id 2 ; Query CbirOr228 ; Align 18457 126 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr224PSE(S) Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 158 Query range: 123 -> 216 Target range: 26267 -> 25988 124 : PheLeuPhePhePheAlaHisCysPheLeuThrMetCysIleIleMetLeuMetSerLeu : 143 ||| !||| !.!||| ! ||| ! ..!:!!.!!|||! !:!! !!!!! PheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPhe 26267 : TTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTC : 26210 144 : MetSerPheIleLeuAspIleValLeuProLeuAsnGluSerArgProValLeuLeuPro : 163 :!!||| ||||||||||||:!!:!!||||||||||||!!!||| !! !|||!!! ! ValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheVal 26209 : GTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTC : 26150 164 : TyrProSerTyrTyrPheValAspAlaGluGluTyrValPheGlnIlePheSerHisThr : 183 ||||||:!!|||||||||||||||! !!!::!!||| !!:! !||| ! .!!|||! ! TyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMet 26149 : TATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATG : 26090 184 : IleValAlaTrpPhePheLeuGlyIleGlyIleMetAlaHisAspGlyMetPheIleThr : 203 !:!!!.! ! ! .!.||| ! !! !.!! ||| !|||!.!! !:!:!: ! TyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyr 26089 : TATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTAC : 26030 204 : TyrIleGluHisIleCysSerSerPheAlaValIleGly : 216 !:!::!!||| !|||.!!! !!!.|||:!! !||| AlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 26029 : GCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 25989 vulgar: CbirOr224PSE(S) 123 216 . LHQN01017803.1 26267 25988 - 158 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26267 158 - . gene_id 1 ; sequence CbirOr224PSE(S) ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26267 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26267 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26267 158 - . alignment_id 1 ; Query CbirOr224PSE(S) ; Align 26268 124 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr224PSE(S) Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 125 -> 216 Target range: 14203 -> 13930 126 : PhePhePheAlaHisCysPheLeuThrMetCysIleIleMetLeuMetSerLeuMetSer : 145 !:!! .!.|||:!!....!!:!! !:!: !:!:.!!:!!! !! ! !!:!!! !! TyrSerIleAlaAsnAlaIleValCysValIleLeuPheValSerThrProValThrPro 14203 : TATTCGATAGCGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCG : 14146 146 : PheIleLeuAspIleValLeuProLeuAsnGluSerArgProValLeuLeuProTyrPro : 165 !||||||||||||:!!|||||| !|||||||||||| !||| !! ! !|||||| HisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrPro 14145 : CATATTTTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTATCCG : 14086 166 : SerTyrTyrPheValAspAlaGluGluTyrValPheGlnIlePheSerHisThrIleVal : 185 :!!|||||||||..!|||! !.!.:!!|||! ! ! ! |||.!!!!!|||! ! ! AlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSer 14085 : GCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCC : 14026 186 : AlaTrpPhePheLeuGlyIleGlyIleMetAlaHisAspGlyMetPheIleThrTyrIle : 205 !.! .!! ! :!! ! !! ! !:!:||| !||| !! !:!||| ! !:!: ValIleLeuValValPheTyrValTyrValAlaCysAspThrSerTyrIleTyrValVal 14025 : GTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTG : 13966 206 : GluHisIleCysSerSerPheAlaValIleGly : 216 :!!||| !|||.!!! !!!.|||||| !||| GlnHisGlyCysGlyLeuLeuAlaValSerGly 13965 : CAACACGGCTGCGGATTGTTGGCCGTGTCCGGg : 13931 vulgar: CbirOr224PSE(S) 125 216 . LHQN01017803.1 14203 13930 - 127 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13931 14203 127 - . gene_id 2 ; sequence CbirOr224PSE(S) ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13931 14203 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13931 14203 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13931 14203 127 - . alignment_id 2 ; Query CbirOr224PSE(S) ; Align 14204 126 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr224PSE(S) Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 131 -> 202 Target range: 33705 -> 33492 132 : PheLeuThrMetCysIleIleMetLeuMetSerLeuMetSerPheIleLeuAspIleVal : 151 !:!:!! !:!!! !:!:.!! ! ! !!|||!!: !!||||||||||||:!!:!! TyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeuAspLeuIle 33705 : TACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTGGACCTAATT : 33648 152 : LeuProLeuAsnGluSerArgProValLeuLeuProTyrProSerTyrTyrPheValAsp : 171 ! !||||||||||||||||||||| !|||! ! !!||| !:!!|||! !!:! !!:!! SerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyrCysTyrPheAsn 33647 : TCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTACTGTTACTTCAAT : 33588 172 : AlaGluGluTyrValPheGlnIlePheSerHisThrIleValAlaTrpPhePheLeuGly : 191 !!!!:!!:||| !!:! ! :!! ! .!!:!!|||! !!.!..! .!. !||| ProAspAspTyrTyrTyrTyrValValGlyTyrThrSerAlaCysIleGlyMetAlaGly 33587 : CCGGACGACTACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATAGGAATGGCCGGA : 33528 192 : IleGlyIleMetAlaHisAspGlyMetPheIle : 202 :!!! !:!!:!:!.! !||| !!!:.!.||| LeuValLeuValGlyAlaAspIleIleMetIle 33527 : CTCGTGCTTGTCGGCGCTGACATTATTATGATA : 33493 vulgar: CbirOr224PSE(S) 131 202 . LHQN01017803.1 33705 33492 - 105 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33493 33705 105 - . gene_id 3 ; sequence CbirOr224PSE(S) ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33493 33705 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33493 33705 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33493 33705 105 - . alignment_id 3 ; Query CbirOr224PSE(S) ; Align 33706 132 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr224PSE(S) Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 311 -> 374 Target range: 34375 -> 34564 312 : IleAspHisSerLeuGlnIleArgAspArgIleTyrAsnSerSerTrpTyrAsnValSer : 331 ||| !!!.||| !:!!!!:!!!:!! ! !|||.!.|||!:!||||||||||||||| IlePheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSer 34376 : ATATTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCA : 34433 332 : AlaLysSerArgGluLeuValMetMetValMetMetLysSerLeuArgProSerPheIle : 351 !! !..! !:!!! !:!!:!:.!.:!!||| !:!!!! !|||||| !! !:!: ProProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeu 34434 : CCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTG : 34493 352 : SerAlaGlyLysIleTyrIlePheSerLeuLysSerPheIleThrValValGlnAlaSer : 371 !!!|||||||||.!! !! !||||||:!!:!!! !|||! !|||||| ! ::: ThrAlaGlyLysPheSerThrPheSerMetGluMetPheSerThrValSerProIleAsn 34494 : ACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTGTAAGCccgataaat : 34553 372 : IleSerTyr : 374 ||| ::: IleHisPhe 34554 : attcatttt : 34564 vulgar: CbirOr224PSE(S) 311 374 . KQ414804.1 34375 34564 + 107 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34376 34564 107 + . gene_id 1 ; sequence CbirOr224PSE(S) ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 34376 34564 . + . KQ414804.1 exonerate:protein2genome:local exon 34376 34564 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34376 34564 107 + . alignment_id 1 ; Query CbirOr224PSE(S) ; Align 34376 312 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr227 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 321 -> 375 Target range: 34381 -> 34543 322 : HisSerLeuGlnMetArgAspArgIleTyrAsnSerSerTrpTyrAsnValSerThrLys : 341 !!.||| !:!!|||!!!:!! ! !|||.!.|||!:!||||||||||||||| !! ! GlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProPro 34382 : CAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCA : 34439 342 : SerArgGluLeuValMetMetValMetMetLysSerLeuArgProSerPheIleSerAla : 361 ..! !:!!! !:!!:!:.!.:!!||| !:!!!! !|||||| !! !:!:!!!||| GluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAla 34440 : GAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCA : 34499 362 : GlyLysIleTyrIlePheSerLeuLysSerPheIleThrVal : 375 ||||||.!! !! !||||||:!!:!!! !|||! !|||||| GlyLysPheSerThrPheSerMetGluMetPheSerThrVal 34500 : GGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTGTA : 34543 vulgar: CbirOr227 321 375 . KQ414804.1 34381 34543 + 107 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34382 34543 107 + . gene_id 1 ; sequence CbirOr227 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 34382 34543 . + . KQ414804.1 exonerate:protein2genome:local exon 34382 34543 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34382 34543 107 + . alignment_id 1 ; Query CbirOr227 ; Align 34382 322 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr225 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 320 -> 376 Target range: 34375 -> 34543 321 : IleAspHisSerPheGlnIleArgAspArgIleTyrHisSerSerTrpTyrAsnValSer : 340 ||| !!!.||| :!!!!:!!!:!! ! !|||.!.|||!:!||||||||||||||| IlePheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSer 34376 : ATATTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCA : 34433 341 : ThrLysSerGlnLysMetAlaMetIleValMetAlaArgSerArgArgProAlaPhePhe : 360 !! !..! ||| !:!:.!!:!!||| !|||!!! !|||||| !! !!!. ProProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeu 34434 : CCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTG : 34493 361 : SerAlaGlyLysValTyrIlePheSerLeuGluSerPheThrThrIle : 376 !!!||||||||| !! !! !||||||:!!|||! !|||!:!|||:!! ThrAlaGlyLysPheSerThrPheSerMetGluMetPheSerThrVal 34494 : ACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTGTA : 34543 vulgar: CbirOr225 320 376 . KQ414804.1 34375 34543 + 112 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34376 34543 112 + . gene_id 1 ; sequence CbirOr225 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 34376 34543 . + . KQ414804.1 exonerate:protein2genome:local exon 34376 34543 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34376 34543 112 + . alignment_id 1 ; Query CbirOr225 ; Align 34376 321 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr218 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 317 -> 386 Target range: 51843 -> 52050 318 : IleAsnValPhePheGluAsnTrpGlnGlyGlnLysIleIleAspPheSerGluLysIle : 337 :!!|||..!|||.!!! !!:!! ... ::: ... |||! :!!||| ValAsnThrPheIleAlaSerCysHis***LysPhePheThrPheGlnSerValGluIle 51844 : GTTAATACTTTTATTGCAAGTTgtcattaaaaattcttcacttttcaGAGCGTTGAAATA : 51901 338 : PheGluSerAlaTyrAsnThrLysTrpTyrAsnMetSerIleAlaThrArgLysLeuLeu : 357 !.!.:!!||||||:!!:!!:!!|||||||||:!!||| !!.! !||||||||| AlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLysAsnAlaLysLeuLeu 51902 : GCTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTGCTA : 51961 358 : IleIleIleMetMetLysSerArgThrProLeuValIleThrAlaGlyLysIleMetIle : 377 :!!||||||||| ::!:!!||| !|||||| !||||||||||||!:!.!! ! ! LeuIleIleMetArgArgAlaArgLeuProLeuGlnIleThrAlaGlyArgPheAlaThr 51962 : CTAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCAGGTAGATTTGCTACT : 52021 378 : MetSerTyrValThrPheAsnAlaVal : 386 .!.!!! :!! !!:!::: !||| PheThrLeuMetLeuTyrSerGlnVal 52022 : TTCACTCTGATGCTGTATTCACAGGTa : 52050 vulgar: CbirOr218 317 386 . KQ414804.1 51843 52050 + 114 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51844 52050 114 + . gene_id 1 ; sequence CbirOr218 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 51844 52050 . + . KQ414804.1 exonerate:protein2genome:local exon 51844 52050 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51844 52050 114 + . alignment_id 1 ; Query CbirOr218 ; Align 51844 318 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr222 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 88 -> 212 Target range: 456822 -> 457414 89 : IleArgGlyLeuPheAspGlnIleArgAspAspPheLeuSerLeuArgAsnSerSerA : 108 ||||||! !:!!!:!|||.!.||| !||||||!:: !||||||!:!|||! !..!! IleArgGluIleTyrAspAsnIleAlaAspAspTrpLysSerLeuLysAsnMetGluG 456823 : ATACGGGAGATTTACGACAATATCGCTGACGATTGGAAATCATTGAAGAACATGGAAG : 456880 109 : spIleGluIleLeuArgLysTyrAlaAspAsnGlyArgArgLeuSerThrIleTyrVa : 127 !:|||||||||:::||||||||||||:!!..!|||||||||!!!!!! ! ! !. luIleGluIleIleArgLysTyrAlaAsnGlyGlyArgArgPheThrLeuAlaIleAl 456881 : AAATCGagattattcgaaaatatgcGAACGGTGGCAGGAGATTTACACTTGCAATAGC : 456937 128 : l{C} >>>> Target Intron 1 >>>> {ys}LeuLeuTyrMetValIleVal : 135 !{ } 214 bp { !}! ! !||| ! ! !:!! a{I}++ ++{le}SerThrTyrCysGlyAlaLeu 456938 : A{A}gt.........................ag{TT}TCTACTTATTGTGGCGCACTG : 457175 136 : IlePheLeuLeuLeuProLeuLysProLeuIlePheHis<-><->GlyAlaAsnThrT : 153 :!!.!! ! !|||! !||| |||:!!:!!.!! !! ! ! !! !.! ValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnG 457176 : GTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACG : 457235 154 : hrThrArgProLeuLeuLeuHisLysValLysTyrTyrTyrIleAspIleAspLysTy : 172 !:!!||||||! ! !|||:!! ..! ! ! |||!:!:!!|||!!: ! ||||| luSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTy 457236 : AATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTA : 457292 173 : rTyrPheLeuIleTrpIleHisGlyTyrLeuAlaSerLeuIleCysGlyThrTrpIle : 191 | !! !||| ||| ! ! !..! !||||||...!.!||| !:!! rMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeu 457293 : TATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTA : 457349 192 : IleAlaAlaAspAlaThrPheMetIlePheValGlnHisAlaCysGlyLeuPheIleV : 211 ! !||| !!!::!! !.!!!!:! !|||! !|||!.!||||||||||||! : ThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysL 457350 : ACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGC : 457409 212 : alThr : 212 !!||| euThr 457410 : TTACT : 457414 vulgar: CbirOr222 88 212 . KQ414815.1 456822 457414 + 149 M 39 117 S 0 1 5 0 2 I 0 210 3 0 2 S 1 2 M 20 60 G 0 6 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 456823 457414 149 + . gene_id 1 ; sequence CbirOr222 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 456823 456940 . + . KQ414815.1 exonerate:protein2genome:local exon 456823 456940 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 456941 456942 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 456941 457154 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457153 457154 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457155 457414 . + . KQ414815.1 exonerate:protein2genome:local exon 457155 457414 . + . insertions 6 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 456823 457414 149 + . alignment_id 1 ; Query CbirOr222 ; Align 456823 89 117 ; Align 457157 129 60 ; Align 457223 149 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr221 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 164 -> 226 Target range: 478629 -> 478815 165 : MetPheArgThrGluTyrPheLeuAspSerGluLysTyrTyrTyrProLeuLeuValH : 184 ||| !! !||||||||||||:!!|||...:::||||||::: :::::: | MetGlyThrThrGluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerH 478630 : ATGGGCACCACGGAATACTTCATTGacgagaagaaatatttcatatttattatttctc : 478687 185 : isSerTyrIleGlyThrLeuGlyPheValThrIleValValAlaIleAspSerMetLe : 203 || !|||:!:..! !:!! ! !!.!|||:!! !||||||! !!!:||| :! isValTyrLeuSerLeuIleMetHisAlaThrValTyrValAlaThrGluSer***Va 478688 : acGTGTACCTGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGT : 478744 204 : uValPheHisIleGlnHisGluCysGlyMetCysGluIleLeuGlyTyrArgLeuAla : 222 !:!!.!. !!: !||| !|||:!!! !.!.|||:!! !!|||!.!! ! ! lIleMetTrpMetValHisThrIleGlyLeuTyrAsnIleIleArgTyrAsnGlnGln 478745 : GATTATGTGGATGGTGCATACTATCGGCTTGTATAATATCATAAGGTATAATCAGCAA : 478801 223 : ArgIleValAsp : 226 |||:!::!!||| ArgLeuIleAsp 478802 : AGATTGATCGAT : 478815 vulgar: CbirOr221 164 226 . KQ414815.1 478629 478815 + 110 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478630 478815 110 + . gene_id 1 ; sequence CbirOr221 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478630 478815 . + . KQ414815.1 exonerate:protein2genome:local exon 478630 478815 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478630 478815 110 + . alignment_id 1 ; Query CbirOr221 ; Align 478630 165 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 130 -> 213 Target range: 457162 -> 457411 131 : TyrIleIleSerProValPheValSerIleSerLeuIleProGlnIleLeuAspLeuI : 150 ||| ! !:!!! !|||.!!..!!!!:!:..!|||.!!||| !:!!||||||:!!: TyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleV 457163 : TATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTG : 457220 151 : leAlaProLeuAsnGluSerArgProIleLeuLeuProTyrGluAlaTyrTyrPheVa : 169 !:!.!||||||||||||||||||||| ! !||| ! ! !||| ! |||||||| alValProLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheVa 457221 : TGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGT : 457277 170 : lAspGluGluGluTyrPhePheTyrIlePhePheHisAlaValValAlaLeuGluIle : 188 |||| !:!!:!!|||.!. !||||||.!! ||| !:!!..!..!||| !||| lAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIle 457278 : CGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATC : 457334 189 : AlaIleThrGlyLeuLeuAlaHisAspCysMetLeuLeuThrTyrValGlnHisValC : 208 ||| !||| !||| !|||:!!!!:! !:!:|||:!!||| !!|||! !||||||| AlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValC 457335 : GCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTT : 457394 209 : ysSerIlePheAlaIle : 213 ||.!!:!:||| !:!! ysGlyLeuPheLysLeu 457395 : GTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr229 130 213 . KQ414815.1 457162 457411 + 178 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457163 457411 178 + . gene_id 1 ; sequence CbirOr229 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457163 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457163 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457163 457411 178 + . alignment_id 1 ; Query CbirOr229 ; Align 457163 131 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 145 -> 213 Target range: 482031 -> 482235 146 : IleLeuAspLeuIleAlaProLeuAsnGluSerArgProIleLeuLeuProTyrGluA : 165 :!!||||||:!!|||!.!||||||||||||!!!||| !! !! !!!!||| ..! ValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerM 482032 : GTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAA : 482089 166 : laTyrTyrPheValAspGluGluGluTyrPhePheTyrIlePhePheHisAlaValVa : 184 ! ! ||||||:!!|||:!!:!!:!!|||! .!!!:!||| |||||| ! ! ! etGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPh 482090 : TGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTT : 482146 185 : lAlaLeuGluIleAlaIleThrGlyLeuLeuAlaHisAspCysMetLeuLeuThrTyr : 203 !:!!!!! :!!!.! !||| !:!!:!!!.! !!: !:!!:!!:!!! !!:: eSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrp 482147 : TTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGG : 482203 204 : ValGlnHisValCysSerIlePheAlaIle : 213 :!!:!!|||!.!...|||:!:|||.!!:!! LeuGluHisAlaAlaSerLeuPheThrLeu 482204 : CTTGAACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: CbirOr229 145 213 . KQ414815.1 482031 482235 + 122 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482032 482235 122 + . gene_id 2 ; sequence CbirOr229 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482032 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 482032 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482032 482235 122 + . alignment_id 2 ; Query CbirOr229 ; Align 482032 146 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 144 -> 213 Target range: 475563 -> 475770 145 : GlnIleLeuAspLeuIleAlaProLeuAsnGluSerArgProIleLeuLeuProTyrG : 164 :!!|||||||||! !:!: !|||||||||||||||||||||! !! !! !! ! . LysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleA 475564 : AAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtac : 475621 165 : luAlaTyrTyrPheValAspGluGluGluTyrPhePheTyrIlePhePheHisAlaVa : 183 .. ||||||::::::|||:!!:!!||||||!:! ! ! ! .!!:!! !.. rgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnTh 475622 : gaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGAC : 475678 184 : lValAlaLeuGluIleAlaIleThrGlyLeuLeuAlaHisAspCysMetLeuLeuThr : 202 !|||.!!:!! :!: ! !||| !! !:!!||| !!!:...!!:!!! !! ! rValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMet 475679 : TGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATG : 475735 203 : TyrValGlnHisValCysSerIlePheAlaIle : 213 !:::!!|||||| ! |||:::||| ||| TrpLeuGlnHisCysIleSerLeuPheGluIle 475736 : TGGTTGCAACATTGCATaagtttatttgaaatt : 475770 vulgar: CbirOr229 144 213 . KQ414815.1 475563 475770 + 111 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475564 475770 111 + . gene_id 3 ; sequence CbirOr229 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475564 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475564 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475564 475770 111 + . alignment_id 3 ; Query CbirOr229 ; Align 475564 145 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 123 -> 211 Target range: 460970 -> 461234 124 : LeuIlePheMetLeuTrpCysTyrIleIleSerProValPheValSerIleSerLeuI : 143 ...:::|||::: ! !:!:!! ! ! !:!!.!!!.!! !||| !!! !: PheValPheLeuAlaIleValPheLeuCysLeuIleMetIleAlaLeuIleProTyrL 460971 : ttcgtctttttaGCAATTGTATTCTTATGCCTAATAATGATCGCGTTAATTCCGTATT : 461028 144 : leProGlnIleLeuAspLeuIleAlaProLeuAsnGluSerArgProIleLeuLeuPr : 162 !:|||!:!|||!!!! :!!:!:.!!! !! !|||..!!!!||||||:!: !:!!|| euProArgIlePheAlaIleValThrHisGlnAsnArgThrArgProLeuLysIlePr 461029 : TGCCGCGGATCTTCGCGATTGTGACGCATCAGAACAGAACTCGTCCGTTGAAAATACC : 461085 163 : oTyrGluAlaTyrTyrPheValAspGluGluGluTyrPhePheTyrIlePhePheHis : 181 | ! !.! ! ||| !||||||.!..!.||||||||| ! |||.!.!!.||| oIleIleValGluTyrHisValAspHisAsnGluTyrPheAspLeuIleIleLeuHis 461086 : GATCATCGTGGAGTATCACGTGGATCATAACGAGTACTTCGATCTGATCATATTACAC : 461142 182 : AlaValValAlaLeuGluIleAlaIleThrGlyLeuLeuAlaHisAspCysMetLeuL : 201 ! ! !!..!! ! |||!.!.!! !! !:!!:!!:!! !!!: ! !| IleAsnPheCysHisPheIleGlyPheCysValValIleSerAlaGluValThrAsnL 461143 : ATTAACTTCTGCCACTTTATCGGCTTCTGCGTTGTTATATCTGCTGAAGTGACAAATT : 461202 202 : euThrTyrValGlnHisValCysSerIlePhe : 211 ||..! !!.!:!!|||:!!||||||:!:||| euValLeuAlaLysHisIleCysSerLeuPhe 461203 : TGGTACTTGCGAAACACATTTGCTCGTTGTTC : 461234 vulgar: CbirOr229 123 211 . KQ414815.1 460970 461234 + 107 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 460971 461234 107 + . gene_id 4 ; sequence CbirOr229 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 460971 461234 . + . KQ414815.1 exonerate:protein2genome:local exon 460971 461234 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 460971 461234 107 + . alignment_id 4 ; Query CbirOr229 ; Align 460971 124 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr225 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 119 -> 215 Target range: 457123 -> 457411 120 : AsnSerArgArgPheSerLeuIleTyrLeuValTyrCysPheLeuAlaValValIleP : 139 |||...:::::: !!!: ! !|||! ! !!:!! !!.!!.!:!!:!!. AsnAspLysLysLysProSerMetIleThrValSerThrTyrCysGlyAlaLeuValI 457124 : aatgataaaaaaaaaccttcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTA : 457181 140 : heMetSerMetSerLeuValProTyrIleLeuAsnIleValArgProLeuAsnGlnSe : 158 !!! !!!:!!..!||| !!||| :!!|||:!!|||||| !|||||||||:!!|| leThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSe 457182 : TTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATC : 457238 159 : rArgProIleLeuProProTyrArgGlyTyrTyrPheIleAspSerGlnGluHisPhe : 177 ||||||| ! ! ! ! !! !!.! ! ||||||:!!|||! !:!!:!!:!!.!. rArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMet 457239 : ACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATG : 457295 178 : PheGlnIleLeuTrpHisSerIleValGlyTrpGluValValValAlaAlaValValA : 197 ! ! |||:!! !|||! !|||..! !! !:!!!.!!.!.!!.!!:!!..!| HisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrA 457296 : CATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAG : 457355 198 : laHisAspSerLeuPheValThrTyrValGluHisIleCysSerMetPheAlaLeu : 215 ||:!!!!:||||||.!!:!!||| !!||| !|||:!!|||.!!:!!||| !||| laAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457356 : CTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr225 119 215 . KQ414815.1 457123 457411 + 139 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457124 457411 139 + . gene_id 1 ; sequence CbirOr225 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457124 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457124 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457124 457411 139 + . alignment_id 1 ; Query CbirOr225 ; Align 457124 120 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr225 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 132 -> 216 Target range: 481986 -> 482238 133 : PheLeuAlaValValIlePheMetSerMetSerLeuValProTyrIleLeuAsnIleV : 152 !:!! !:!!|||:!!|||.!.!!: ! !:!! ! !!:!:!!|||:!!:!!: TyrProSerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspValI 481987 : TATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCA : 482044 153 : alArgProLeuAsnGlnSerArgProIleLeuProProTyrArgGlyTyrTyrPheIl : 171 !! !|||||||||:!!!!!||| !! !! ! !||| ! ! ! |||||||| leValProLeuAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPheIl 482045 : TTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCAT : 482101 172 : eAspSerGlnGluHisPhePheGlnIleLeuTrpHisSerIleValGlyTrpGluVal : 190 ||||..!|||:!!:!!! .!! ||| !!::|||..! !!..!!:: ||| eAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuVal 482102 : TGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTA : 482158 191 : ValValAlaAlaValValAlaHisAspSerLeuPheValThrTyrValGluHisIleC : 210 |||!.!.!! !:!!|||!.! !!:!!!|||.!!|||! !!:::!!|||||| !. ValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaA 482159 : GTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTG : 482218 211 : ysSerMetPheAlaLeuIle : 216 ..|||:!!|||.!!|||:!! laSerLeuPheThrLeuVal 482219 : CAAGCTTGTTCACCCTTGTA : 482238 vulgar: CbirOr225 132 216 . KQ414815.1 481986 482238 + 122 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481987 482238 122 + . gene_id 2 ; sequence CbirOr225 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481987 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 481987 482238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481987 482238 122 + . alignment_id 2 ; Query CbirOr225 ; Align 481987 133 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr225 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 125 -> 216 Target range: 460970 -> 461243 126 : LeuIleTyrLeuValTyrCysPheLeuAlaValValIlePheMetSerMetSerLeuV : 145 ...::::::|||!.! ! ||||||..!:!!:!!!!:.!! !! !!!: !!! !: PheValPheLeuAlaIleValPheLeuCysLeuIleMetIleAlaLeuIleProTyrL 460971 : ttcgtctttttaGCAATTGTATTCTTATGCCTAATAATGATCGCGTTAATTCCGTATT : 461028 146 : alProTyrIleLeuAsnIleValArgProLeuAsnGlnSerArgProIleLeuProPr : 164 !!||| |||!!! ||||||! !! !! !|||::!!!!||||||:!: ! !|| euProArgIlePheAlaIleValThrHisGlnAsnArgThrArgProLeuLysIlePr 461029 : TGCCGCGGATCTTCGCGATTGTGACGCATCAGAACAGAACTCGTCCGTTGAAAATACC : 461085 165 : oTyrArgGlyTyrTyrPheIleAspSerGlnGluHisPhePheGlnIleLeuTrpHis : 183 | !! !! ! ! ||| !:!:||| !.!.|||:!!||| !! !|||:!!! ||| oIleIleValGluTyrHisValAspHisAsnGluTyrPheAspLeuIleIleLeuHis 461086 : GATCATCGTGGAGTATCACGTGGATCATAACGAGTACTTCGATCTGATCATATTACAC : 461142 184 : SerIleValGlyTrpGluValValValAlaAlaValValAlaHisAspSerLeuPheV : 203 ! !! ! !! !! :!!! ! !!..!!.!|||:!!:!! !!!: ! ! !: IleAsnPheCysHisPheIleGlyPheCysValValIleSerAlaGluValThrAsnL 461143 : ATTAACTTCTGCCACTTTATCGGCTTCTGCGTTGTTATATCTGCTGAAGTGACAAATT : 461202 204 : alThrTyrValGluHisIleCysSerMetPheAlaLeuIle : 216 !!..! !!.!:!!||||||||||||:!!|||! !|||:!! euValLeuAlaLysHisIleCysSerLeuPheAspLeuVal 461203 : TGGTACTTGCGAAACACATTTGCTCGTTGTTCGATCTTGTC : 461243 vulgar: CbirOr225 125 216 . KQ414815.1 460970 461243 + 105 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 460971 461243 105 + . gene_id 3 ; sequence CbirOr225 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 460971 461243 . + . KQ414815.1 exonerate:protein2genome:local exon 460971 461243 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 460971 461243 105 + . alignment_id 3 ; Query CbirOr225 ; Align 460971 126 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr226 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 117 -> 211 Target range: 457123 -> 457405 118 : AsnSerArgArgPheAlaLeuLeuTyrSerValTyrCysThrLeuSerLeuPheLeuP : 137 |||...:::::: !:!! !!!!|||! ! ! !! !.!! !.!.:!!. AsnAspLysLysLysProSerMetIleThrValSerThrTyrCysGlyAlaLeuValI 457124 : aatgataaaaaaaaaccttcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTA : 457181 138 : heLeuSerLeuSerLeuIleProPheAlaLeuAspIleIleLeuProLeuAsnGluSe : 156 !! !!!!|||..!|||.!!|||.!. !|||||||||:!::!!|||||||||||||| leThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSe 457182 : TTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATC : 457238 157 : rArgProIleValSerProTyrProAlaAsnTyrPheValAspValArgGluHisPhe : 175 ||||||| !! !! ! ! ! !!|||.!.||||||||||||:!!!:!:!!:!!.!. rArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMet 457239 : ACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATG : 457295 176 : PheLysIleTyrTrpHisSerIleLeuAlaTrpGluIleIleIleIleGlyIleIleT : 195 ! ! ||| ! !|||! !||| !..! !||| !! ! !:!!! !. HisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrA 457296 : CATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAG : 457355 196 : hrTyrMetCysMetTyrValThrTyrIleGluHisValCysSerIlePhe : 211 !! !! ! !:!: !:!!||| !!:!! !|||||||||.!!:!:||| laAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPhe 457356 : CTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTC : 457405 vulgar: CbirOr226 117 211 . KQ414815.1 457123 457405 + 129 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457124 457405 129 + . gene_id 1 ; sequence CbirOr226 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457124 457405 . + . KQ414815.1 exonerate:protein2genome:local exon 457124 457405 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457124 457405 129 + . alignment_id 1 ; Query CbirOr226 ; Align 457124 118 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr226 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 146 -> 215 Target range: 485725 -> 485932 147 : LeuAspIleIleLeuProLeuAsnGluSerArgProIleValSerProTyrProAlaA : 166 |||||||||:!::!!||||||||| ! !!!|||||| ..!! !||| !:!!. LeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnSerG 485726 : CTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACTCGG : 485783 167 : snTyrPheValAspValArgGluHisPhePheLysIleTyrTrpHisSerIleLeuAl : 185 !.:!!||||||||| !!:!:!!:!!|||!:! ||| ||| !:!!||| luHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLeuPh 485784 : AACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCTCTT : 485840 186 : aTrpGluIleIleIleIleGlyIleIleThrTyrMetCysMetTyrValThrTyrIle : 204 ! ||| ! |||! !:!!:!!!:! ::: :::.!! ||| eValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIleIle 485841 : CGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATAATA : 485897 205 : GluHisValCysSerIlePheAlaThrIleGly : 215 :!!|||..!|||.!!:!:!:!.!!! !:!!||| GlnHisThrCysGlyLeuTyrThrIleValGly 485898 : CAGCACACCTGTGGTTTGTATACAATCGTTGGG : 485932 vulgar: CbirOr226 146 215 . KQ414815.1 485725 485932 + 115 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485726 485932 115 + . gene_id 2 ; sequence CbirOr226 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485726 485932 . + . KQ414815.1 exonerate:protein2genome:local exon 485726 485932 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485726 485932 115 + . alignment_id 2 ; Query CbirOr226 ; Align 485726 147 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr226 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 132 -> 214 Target range: 481992 -> 482238 133 : SerLeuPheLeuPheLeuSerLeuSerLeuIleProPheAlaLeuAspIleIleLeuP : 152 |||:!!!!.:!!.!.:!! !! ! !:!! !|||!.!||||||:!!|||:!!| SerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValP 481993 : TCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTC : 482050 153 : roLeuAsnGluSerArgProIleValSerProTyrProAlaAsnTyrPheValAspVa : 171 |||||||||||!!!||| !! ! !! !||| !! !.!.||||||:!!||| roLeuAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGl 482051 : CTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCA : 482107 172 : lArgGluHisPhePheLysIleTyrTrpHisSerIleLeuAlaTrpGluIleIleIle : 190 !!:!:!!:!!! .!! ||| !::|||..! !!!:!!!:: :!!:!! ! nGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAla 482108 : GCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCA : 482164 191 : IleGlyIleIleThrTyrMetCysMetTyrValThrTyrIleGluHisValCysSerI : 210 ! !|||:!! ! ! !:!! !|||! !!:::!!||||||!.!...|||: ThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerL 482165 : ACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCT : 482224 211 : lePheAlaThrIle : 214 !:|||.!! !:!! euPheThrLeuVal 482225 : TGTTCACCCTTGTA : 482238 vulgar: CbirOr226 132 214 . KQ414815.1 481992 482238 + 114 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481993 482238 114 + . gene_id 3 ; sequence CbirOr226 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481993 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 481993 482238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481993 482238 114 + . alignment_id 3 ; Query CbirOr226 ; Align 481993 133 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr228 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 140 -> 211 Target range: 457192 -> 457405 141 : SerLeuIleProGlnLeuLeuAsnValValLeuProLeuAsnGluSerArgProValL : 160 ..!|||.!!||| !||||||:!!:!!|||:!!||||||||||||||||||||| ! GlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysG 457193 : CAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTG : 457250 161 : euProProTyrProGlyHisTyrPheValAspGluGluGluTyrPheLeuHisIlePh : 179 ! ! ! ! !!!.!.!.|||||||||||| !:!!:!!|||.!.! !:!!|||.! luLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIl 457251 : AGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCAT : 457307 180 : eCysHisSerIleValAlaTrpGluIleAlaMetThrGlyIleValAlaHisAspCys : 198 !...|||! !|||..!..! !|||||| ||| !:!!..!|||:!!!!:! ! eAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSer 457308 : CGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCC : 457364 199 : MetPheLeuSerCysValGluHisGlyCysSerIlePhe : 211 :!:.!!:!!!!! !||| !|||! !|||.!!:!:||| LeuLeuIleThrAsnValLeuHisValCysGlyLeuPhe 457365 : TTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTC : 457405 vulgar: CbirOr228 140 211 . KQ414815.1 457192 457405 + 132 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457193 457405 132 + . gene_id 1 ; sequence CbirOr228 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457193 457405 . + . KQ414815.1 exonerate:protein2genome:local exon 457193 457405 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457193 457405 132 + . alignment_id 1 ; Query CbirOr228 ; Align 457193 141 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr228 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 145 -> 213 Target range: 482031 -> 482235 146 : LeuLeuAsnValValLeuProLeuAsnGluSerArgProValLeuProProTyrProG : 165 :!!|||:!!|||:!!:!!||||||||||||!!!||| !! !! ! !||| !! ValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerM 482032 : GTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAA : 482089 166 : lyHisTyrPheValAspGluGluGluTyrPheLeuHisIlePheCysHisSerIleVa : 184 !.!.||||||:!!|||:!!:!!:!!|||! ||| !||| ! !|||..! ! etGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPh 482090 : TGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTT : 482146 185 : lAlaTrpGluIleAlaMetThrGlyIleValAlaHisAspCysMetPheLeuSerCys : 203 !:!!!:: :!!!.! ||| !||||||!.! !!: !:!!.!!:!!! !!! eSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrp 482147 : TTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGG : 482203 204 : ValGluHisGlyCysSerIlePheAlaVal : 213 :!!||||||!.!...|||:!:|||.!!:!! LeuGluHisAlaAlaSerLeuPheThrLeu 482204 : CTTGAACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: CbirOr228 145 213 . KQ414815.1 482031 482235 + 108 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482032 482235 108 + . gene_id 2 ; sequence CbirOr228 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482032 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 482032 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482032 482235 108 + . alignment_id 2 ; Query CbirOr228 ; Align 482032 146 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr224PSE(S) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 136 -> 212 Target range: 457177 -> 457405 137 : IleIleMetLeuMetSerLeuMetSerPheIleLeuAspIleValLeuProLeuAsnG : 156 :!!|||! !:!!..!|||.!. !!.!.:!!||||||||||||:!!|||||||||| ValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnG 457178 : GTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACG : 457235 157 : luSerArgProValLeuLeuProTyrProSerTyrTyrPheValAspAlaGluGluTy : 175 ||||||||||| ! !||| ! ! !!:!! ! |||||||||||| !:!!:!!|| luSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTy 457236 : AATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTA : 457292 176 : rValPheGlnIlePheSerHisThrIleValAlaTrpPhePheLeuGlyIleGlyIle : 194 |:!! ! ! |||.!!:!!|||! !|||..!..! .!..!! !!.!! ! !:!! rMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeu 457293 : TATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTA : 457349 195 : MetAlaHisAspGlyMetPheIleThrTyrIleGluHisIleCysSerSerPhe : 212 ! |||:!!!!:..!:!:.!!|||||| !!:!! !|||:!!|||.!!! !||| ThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPhe 457350 : ACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTC : 457405 vulgar: CbirOr224PSE(S) 136 212 . KQ414815.1 457177 457405 + 144 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457178 457405 144 + . gene_id 1 ; sequence CbirOr224PSE(S) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457178 457405 . + . KQ414815.1 exonerate:protein2genome:local exon 457178 457405 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457178 457405 144 + . alignment_id 1 ; Query CbirOr224PSE(S) ; Align 457178 137 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr224PSE(S) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 109 -> 215 Target range: 481920 -> 482238 110 : TyrAspIleMetLysSerTyrAlaLysAsnSerArgArgLeuPheLeuPhePhePheA : 129 ||||||||| !:!! !||| !! !!::||| ... | TyrAspIleHisArgMetTyrAsnIleSerSerIle***Asn***LysAsnIleThrA 481921 : TACGATATACATAGAATGTATAATATAAGcagtatttaaaattagaaaaatattacag : 481978 130 : laHisCysPheLeuThrMetCysIleIleMetLeuMetSerLeuMetSerPheIleLe : 148 || !!:!! !:!!:!!! |||:!:!!:||| !:!! !||||||:!!|| laLeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerPheValLe 481979 : cGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCT : 482035 149 : uAspIleValLeuProLeuAsnGluSerArgProValLeuLeuProTyrProSerTyr : 167 ||||:!!:!!:!!||||||||||||!!!||| !! !! !!!!||| !!! ! ! uAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMetGlu 482036 : AGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAG : 482092 168 : TyrPheValAspAlaGluGluTyrValPheGlnIlePheSerHisThrIleValAlaT : 187 ||||||:!!||| !:!!:!!||| !.!! ||| ! !||| ! !!:!!! TyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerP 482093 : TACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCT : 482152 188 : rpPhePheLeuGlyIleGlyIleMetAlaHisAspGlyMetPheIleThrTyrIleGl : 206 ::.!! ! :!!!.!! !|||:!:!.! !!: !:!!.!!:!!! !!:::!!|| heLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGl 482153 : TTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGA : 482209 207 : uHisIleCysSerSerPheAlaValIle : 215 |||| !...|||! !|||.!!:!!:!! uHisAlaAlaSerLeuPheThrLeuVal 482210 : ACACGCTGCAAGCTTGTTCACCCTTGTA : 482238 vulgar: CbirOr224PSE(S) 109 215 . KQ414815.1 481920 482238 + 127 M 106 318 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481921 482238 127 + . gene_id 2 ; sequence CbirOr224PSE(S) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481921 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 481921 482238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481921 482238 127 + . alignment_id 2 ; Query CbirOr224PSE(S) ; Align 481921 110 318 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr224PSE(S) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 131 -> 215 Target range: 475521 -> 475773 132 : PheLeuThrMetCysIleIleMetLeuMetSerLeuMetSerPheIleLeuAspIleV : 151 !:!! !|||!!:! !! !!!:!!:|||:!: !!!! !||| ||||||||| !: TyrProThrIlePheThrMetIleLeuLeuLeuPheSerSerLysIleLeuAspSerL 475522 : TACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTCTT : 475579 152 : alLeuProLeuAsnGluSerArgProValLeuLeuProTyrProSerTyrTyrPheVa : 170 !!|||||||||||||||||||||||| !! !! !! ! ||||||:: euLeuProLeuAsnGluSerArgProSerTrpSerLeuIleArgIleGluTyrPheIl 475580 : TGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaatagaatatttcat : 475636 171 : lAspAlaGluGluTyrValPheGlnIlePheSerHisThrIleValAlaTrpPhePhe : 189 ::::! !:!!:!!||| !!!:!! !! ! ! ! !:!! !! !|||.!! .!!.!. eAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrValThrIleLeuLeu 475637 : aaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGTAACGATCCTTCTG : 475693 190 : LeuGlyIleGlyIleMetAlaHisAspGlyMetPheIleThrTyrIleGluHisIleC : 209 !!!|||! ! ! !:!:||| !!!:!.!!!:|||! !! !!:::!::!!||| ! PheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrpLeuGlnHisCysI 475694 : TTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGGTTGCAACATTGCA : 475753 210 : ysSerSerPheAlaValIle : 215 ||| ||| :::::: leSerLeuPheGluIleVal 475754 : Taagtttatttgaaattgtt : 475773 vulgar: CbirOr224PSE(S) 131 215 . KQ414815.1 475521 475773 + 107 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475522 475773 107 + . gene_id 3 ; sequence CbirOr224PSE(S) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475522 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475522 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475522 475773 107 + . alignment_id 3 ; Query CbirOr224PSE(S) ; Align 475522 132 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr227 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 117 -> 211 Target range: 457123 -> 457405 118 : AsnSerAsnArgPheSerLeuLeuTyrThrIleTyrCysPheLeuThrThrTyrLeuP : 137 |||......::: !:!! !|||:!!! ! !!:!! ! !.!! :!!. AsnAspLysLysLysProSerMetIleThrValSerThrTyrCysGlyAlaLeuValI 457124 : aatgataaaaaaaaaccttcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTA : 457181 138 : heIleLeuMetSerLeuGluProPheIleLeuAspIleIleLeuProLeuAsnGluSe : 156 !!! ! !:!!..!||| |||.!.:!!|||||||||:!::!!|||||||||||||| leThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSe 457182 : TTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATC : 457238 157 : rArgProIleLeuProProTyrProSerTyrTyrPheValAspThrGluGluTyrPhe : 175 ||||||| ! ! ! ! ! !!:!! ! ||||||||||||! !:!!:!!|||.!. rArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMet 457239 : ACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATG : 457295 176 : PheGlnIlePheLeuHisThrIleMetValTrpThrPheIleValIleGlyIleGlnA : 195 ! ! |||.!! !|||! !|||! ! ! !.!! !.!! ! !:!! !| HisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrA 457296 : CATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAG : 457355 196 : laHisAspCysMetPheIleThrTyrValGluHisIleCysSerSerPhe : 211 ||:!!!!:! !:!:.!!|||||| !!||| !|||:!!|||.!!! !||| laAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPhe 457356 : CTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTC : 457405 vulgar: CbirOr227 117 211 . KQ414815.1 457123 457405 + 136 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457124 457405 136 + . gene_id 1 ; sequence CbirOr227 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457124 457405 . + . KQ414815.1 exonerate:protein2genome:local exon 457124 457405 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457124 457405 136 + . alignment_id 1 ; Query CbirOr227 ; Align 457124 118 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr227 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 135 -> 215 Target range: 485692 -> 485932 136 : LeuPheIleLeuMetSerLeuGluProPheIleLeuAspIleIleLeuProLeuAsnG : 155 :!!.!.|||||| ! !!!!.!. ! !||||||||||||:!::!!||||||||| ValLeuIleLeuGlyIlePheAsnAsnSerIleLeuAspIleLeuIleProLeuAsnT 485693 : GTGCTGATTCTTGGTATATTTAACAACAGTATTCTGGACATTTTGATTCCTTTGAATT : 485750 156 : luSerArgProIleLeuProProTyrProSerTyrTyrPheValAspThrGluGluTy : 174 ! !!!|||||| ! !||| !||| ! :!!||||||||| !:!!:!!|| yrThrArgProArgThrIleProIleAsnSerGluHisPheValAspGlnGlnLysTy 485751 : ACACTCGTCCGCGGACGATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTA : 485807 175 : rPhePheGlnIlePheLeuHisThrIleMetValTrpThrPheIleValIleGlyIle : 193 ||||!:!! ||| !|||..!:!!:!: !! ! !.!! !!.!|||! !:!! rPheTyrProIleAlaAlaHisValValLeuPheValIleIleGlyAlaIleValLeu 485808 : TTTCTACCCTATTGCAGCACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTA : 485864 194 : GlnAlaHisAspCysMetPheIleThrTyrValGluHisIleCysSerSerPheAlaV : 213 ! ::! ::: :::...:::.!! :!!:!!|||! !|||.!!! !!:!.!!: LeuSerThrGluIleLeuIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrI 485865 : CTCAGCaccgaaatattaattatggCGATAATACAGCACACCTGTGGTTTGTATACAA : 485924 214 : alValGly : 215 !!|||||| leValGly 485925 : TCGTTGGG : 485932 vulgar: CbirOr227 135 215 . KQ414815.1 485692 485932 + 127 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485693 485932 127 + . gene_id 2 ; sequence CbirOr227 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485693 485932 . + . KQ414815.1 exonerate:protein2genome:local exon 485693 485932 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485693 485932 127 + . alignment_id 2 ; Query CbirOr227 ; Align 485693 136 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr227 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 126 -> 214 Target range: 481974 -> 482238 127 : ThrIleTyrCysPheLeuThrThrTyrLeuPheIleLeuMetSerLeuGluProPheI : 146 ||| ! !!:!! !:!!..!! :!!.!.|||||| !:!!..! !|||: ThrAlaLeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerPheV 481975 : acagcGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCG : 482032 147 : leLeuAspIleIleLeuProLeuAsnGluSerArgProIleLeuProProTyrProSe : 165 !!||||||:!!|||:!!||||||||||||!!!||| !! !! ! !||| !!! alLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMe 482033 : TTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAAT : 482089 166 : rTyrTyrPheValAspThrGluGluTyrPhePheGlnIlePheLeuHisThrIleMet : 184 ! ! ||||||:!!||| !:!!:!!|||! .!! ||| !!!||| ! .!. tGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPhe 482090 : GGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTT : 482146 185 : ValTrpThrPheIleValIleGlyIleGlnAlaHisAspCysMetPheIleThrTyrV : 204 !!:: ! ! :!!!.!! !||| !.! !!: !:!!.!!:!!! !!::: SerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpL 482147 : TCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGC : 482206 205 : alGluHisIleCysSerSerPheAlaValVal : 214 !!|||||| !...|||! !|||.!!:!!||| euGluHisAlaAlaSerLeuPheThrLeuVal 482207 : TTGAACACGCTGCAAGCTTGTTCACCCTTGTA : 482238 vulgar: CbirOr227 126 214 . KQ414815.1 481974 482238 + 117 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481975 482238 117 + . gene_id 3 ; sequence CbirOr227 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481975 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 481975 482238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481975 482238 117 + . alignment_id 3 ; Query CbirOr227 ; Align 481975 127 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr227 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 88 -> 213 Target range: 464388 -> 464840 89 : IleLysThrLeuThrGluHisLeuPheIleAspTrpGluGluLeuLysAspProGluG : 108 :!:!:! !||| ! !!..:!! !||||||.!. !|||:!!:!! !!!!:| ValArgLeuLeuPheLeuArgValArgTyrAspTrpAsnThrLeuGlnAsnThrAspG 464389 : GTGAGACTGCTTTTTTTACGGGTGAGATATGACTGGAACACGCTACAAAACACGGATG : 464446 109 : luTyrAsnIleMetLysSerTyrAlaGluAsnSerAsnArgPheSerLeuLeuTyrTh : 127 |||||||||||:!!|||!.!|||.!!|||!:!:!!!..! ! !!!:! !:!!:!! luTyrAsnIleLeuLysLysTyrThrGluSerAlaThrLeuValAsnLysIleHis-- 464447 : AATATAATATTCTGAAAAAGTATACCGAGAGCGCTACACTTGTTAACAAAATCCAC-- : 464503 128 : rIle{T} >>>> Target Intron 1 >>>> {yr}CysPheLeuThrThrTyr : 135 :!!{ } 74 bp { }||||||:!! !!..! -Leu{M}++ ++{et}CysPheIleProValIle 464504 : -TTA{A}gt.........................ag{TG}TGCTTCATTCCCGTTATA : 464598 136 : LeuPheIle<->LeuMetSerLeuGluProPheIleLeuAspIleIleLeuProLeuA : 154 ||||||||| |||:!:..!:!! !||| !|||||||||:!::!! !||||||| LeuPheIleCysLeuLeuGluValLeuProAspIleLeuAspValValAlaProLeuA 464599 : CTGTTCATCTGTTTACTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCA : 464658 155 : snGluSerArgProIleLeuProProTyrProSerTyrTyrPheVal<->AspThrGl : 172 ||||||||||| !! !! ! ! ! ! !!:!! ! !:!|||:!! |||!:!.. snGluSerArgSerHisGlnTyrLeuIleThrAlaGluPhePheIleThrAspSerSe 464659 : ATGAATCTCGTTCTCATCAATACTTAATTACCGCGGAATTTTTCATCACTGATAGTTC : 464715 173 : uGluTyrPhePheGlnIlePheLeuHisThrIleMetValTrpThrPheIleValIle : 191 ! ! !!!:!.!! !! !! !:!! !||| !!!:..! ! !.!. !|||! rProAsnTyrIleValThrCysValGlyThrAspIleThrLeuIleMetGlyValThr 464716 : GCCGAATTATATCGTAACTTGTGTTGGTACGGATATTACTCTTATCATGGGAGTCACG : 464772 192 : GlyIleGlnAlaHisAspCysMetPheIleThrTyrValGluHisIleCysSerSerP : 211 !||| ||| !!!: .!. !.!! !! :!!:!!|||||||||:!!! !| ThrIleIleAlaSerGluThrPheThrPheLeuLeuLeuGlnHisIleCysAlaMetP 464773 : ACAATAATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAATGT : 464832 212 : heAlaVal : 213 || !:!! heLysIle 464833 : TCAAAATC : 464840 vulgar: CbirOr227 88 213 . KQ414815.1 464388 464840 + 112 M 38 114 G 1 0 M 1 3 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 9 27 G 0 3 M 31 93 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464389 464840 112 + . gene_id 4 ; sequence CbirOr227 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 464389 464506 . + . KQ414815.1 exonerate:protein2genome:local exon 464389 464506 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local splice5 464507 464508 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 464507 464580 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 464579 464580 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 464581 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464581 464840 . + . insertions 6 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464389 464840 112 + . alignment_id 4 ; Query CbirOr227 ; Align 464389 89 114 ; Align 464503 128 3 ; Align 464583 130 27 ; Align 464613 139 93 ; Align 464709 170 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr227 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 124 -> 214 Target range: 475503 -> 475773 125 : LeuTyrThrIleTyrCysPheLeuThrThrTyrLeuPheIleLeuMetSerLeuGluP : 144 ::: !|||:!! !:!! !|||! !!:! !.!.||||||:!: !!!!..! IleValThrValLeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerS 475504 : attgtTACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGT : 475561 145 : roPheIleLeuAspIleIleLeuProLeuAsnGluSerArgProIleLeuProProTy : 163 !! ||||||||| !:!:||||||||||||||||||||||||! !! ! !!! ! erLysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIl 475562 : CTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAt : 475618 164 : rProSerTyrTyrPheValAspThrGluGluTyrPhePheGlnIlePheLeuHisThr : 182 ||||||:::::: !:!!:!!||||||!:!! !! ! ! :!!:!! ! eArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGln 475619 : acgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAG : 475675 183 : IleMetValTrpThrPheIleValIleGlyIleGlnAlaHisAspCysMetPheIleT : 202 ! !:!:..! !.!..!!! !! ! ! ! !||| !!!:...!!:|||! !! ThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrM 475676 : ACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCA : 475735 203 : hrTyrValGluHisIleCysSerSerPheAlaValVal : 214 !!:::!!:!!||| ! ||| ||| :::||| etTrpLeuGlnHisCysIleSerLeuPheGluIleVal 475736 : TGTGGTTGCAACATTGCATaagtttatttgaaattgtt : 475773 vulgar: CbirOr227 124 214 . KQ414815.1 475503 475773 + 112 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475504 475773 112 + . gene_id 5 ; sequence CbirOr227 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475504 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475504 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475504 475773 112 + . alignment_id 5 ; Query CbirOr227 ; Align 475504 125 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr223 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 161 -> 211 Target range: 485782 -> 485932 162 : GluTyrTyrIleAspMetAspLysTyrTyrPheProIleLeuIleHisGlyTyrLeuT : 181 |||:!!!:!:!!|||..!.!.||||||!:!!:!|||||| ! !|||! ! !||| GluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLeuP 485783 : GAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCTCT : 485840 182 : hrAlaIleValCysIleSerIleAlaIleAlaThrAspThrMetTyrValIleMetVa : 200 !!.!|||:!! !! ! !:!! !:!!::!|||::: ::: ::: !!::! heValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIleIl 485841 : TCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATAAT : 485897 201 : lGlnHisValCysGlyLeuPheThrIleIleGly : 211 !||||||..!|||||||||!:!||||||:!!||| eGlnHisThrCysGlyLeuTyrThrIleValGly 485898 : ACAGCACACCTGTGGTTTGTATACAATCGTTGGG : 485932 vulgar: CbirOr223 161 211 . KQ414815.1 485782 485932 + 122 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485783 485932 122 + . gene_id 1 ; sequence CbirOr223 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485783 485932 . + . KQ414815.1 exonerate:protein2genome:local exon 485783 485932 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485783 485932 122 + . alignment_id 1 ; Query CbirOr223 ; Align 485783 162 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 124 -> 215 Target range: 130433 -> 130160 125 : IlePheMetLeuTrpCysTyrIleIleSerProValPheValSerIleSerLeuIleP : 144 |||.!! :!!!::! !:!:!::!! !! !! !||||||! !:!:..!:!!:!!| IleIleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuP 130433 : ATTATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCC : 130376 145 : roGlnIleLeuAspLeuIleAlaProLeuAsnGluSerArgProIleLeuLeuProTy : 163 |||||||||||! !:!!|||:!!||||||!.!|||! !!.! !!! ! !|||! ! roGlnIleLeuGlyIleIleSerProLeuThrGluIleAsnThrAsnLysLeuLeuVa 130375 : CGCAAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAACAAATTACTCGT : 130319 164 : rGluAlaTyrTyrPheValAspGluGluGluTyrPhePheTyrIlePhePheHisAla : 182 !..!.!! ! |||||||||||| ! :!!!!:|||.!!!:! ||| .!!|||||| lArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAla 130318 : TCGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCG : 130262 183 : ValValAlaLeuGluIleAlaIleThrGlyLeuLeuAlaHisAspCysMetLeuLeuT : 202 ..!:!!|||:!! ! !::!:!:||| !! !:!!::! !||| ::: ThrIleAlaIleMetCysSerValThrMetGlnIleSerSerAspIleLeuAsnAsnI 130261 : ACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaataaca : 130202 203 : hrTyrValGlnHisValCysSerIlePheAlaIleAlaGly : 215 :::::!..!|||:!! !!.!!!!:|||! !:!! !||| lePheMetMetHisIleSerGlyMetPheGluValIleGly 130201 : tatttatGATGCACATCAGTGGAATGTTCGAGGTAATTGGG : 130161 vulgar: CbirOr229 124 215 . KQ414817.1 130433 130160 - 135 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130161 130433 135 - . gene_id 1 ; sequence CbirOr229 ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130161 130433 . - . KQ414817.1 exonerate:protein2genome:local exon 130161 130433 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 130161 130433 135 - . alignment_id 1 ; Query CbirOr229 ; Align 130434 125 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr228 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 331 -> 391 Target range: 128557 -> 128303 332 : TyrAsnGlySerTrpTyrGluLeuProIleLysSerGlnLysLeuMetLeuLeuValM : 351 ||| !!.!!.!||||||:!! !|||:::||||||||||||::::!:|||!!!:!!| TyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheLeuM 128557 : TATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCCTCA : 128500 352 : etMetLysSerPheArgProCysCysValSerAlaGlyLysIleTyrIlePheSerLe : 370 || !:!! !.!...!|||||| ! :!!!.! ! !...:!! ! ! .!! etHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGlyAs 128499 : TGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGGTAA : 128443 371 : uGlnGlyPheCysThr >>>> Target Intron 1 >>>> IleValGlnAlaS : 380 !:!! !!:!..!||| 74 bp :!:||||||.!!. nGluLeuTyrAlaThr++ ++MetValGlnThrG 128442 : CGAGTTGTACGCTACCgt.........................agaTGGTGCAGACTG : 128339 381 : erValSerTyrPheThrMetLeuAlaSerPheGln : 391 !! !!||||||||||||:!:||| !|||!!.||| lyPheSerTyrPheThrValLeuTyrSerLeuGln 128338 : GTTTCTCCTACTTTACGGTTCTCTACTCGTTGCAA : 128304 vulgar: CbirOr228 331 391 . KQ414817.1 128557 128303 - 104 M 44 132 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128304 128557 104 - . gene_id 1 ; sequence CbirOr228 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128557 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128557 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128304 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128304 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128304 128557 104 - . alignment_id 1 ; Query CbirOr228 ; Align 128558 332 132 ; Align 128352 376 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr219 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 173 -> 222 Target range: 1243755 -> 1243608 174 : ArgValAsnTyrMetValAspLeuGluThrTyrTyrValProIlePheIleHisTh : 192 ::::::...|||:!! !!|||:::||| ::: :::::::!!:!!|| LysLeuGlnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrTh 1243755 : aaattgcaataccTGTTCGACAtggagaagaatttttattcattatacGTCTACAC : 1243701 193 : rAlaValCysAspValIleTyrThrIleLeuMetIleMetPheAspValLeuTyrL : 211 |!.! !|||... !!!!: !! !!!::!!!!:|||! .!.|||!.!||||||: rGlyTrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrV 1243700 : TGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATG : 1243644 212 : euThrLeuValGlnHisCysCysGlyLeuPheAla : 222 !!..!:!!:!!!!.||| ||||||||||||||| alValIleIleHisHisThrCysGlyLeuPheAla 1243643 : TGGTAATCATTCATCACACGTGTGGCTTATTCGCT : 1243609 vulgar: CbirOr219 173 222 . KQ414851.1 1243755 1243608 - 105 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243609 1243755 105 - . gene_id 1 ; sequence CbirOr219 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243609 1243755 . - . KQ414851.1 exonerate:protein2genome:local exon 1243609 1243755 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243609 1243755 105 - . alignment_id 1 ; Query CbirOr219 ; Align 1243756 174 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr226 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 162 Query range: 295 -> 377 Target range: 1222687 -> 1222370 296 : GluThrThrLysTyrValLeuTyrValIleSerGlnLeuPheThrLeuLeuIlePr : 314 ||| !! !!:! !!.!:!!!:!|||:!!:::||| ||| |||||||||! GluLeuIleArgLeuAlaMetPheValValAlaGlnLysPheHisLeuLeuIleLe 1222687 : GAACTCATCAGGCTTGCGATGTTTGTCGTAGctcagaaatttcatttgctcATCCT : 1222633 315 : oAsnPheGluGlyGlnLysLeuIleAspHisSerLeuGlnThrHisAspLys{Il} : 332 !!:!!!. ||||||! !|||:!!|||||||||||| ! ! !|||! !{||} uSerLeuProGlyGlnMetLeuLeuAspHisSerLeuGlyLeuAlaAspIle{Il} 1222632 : TAGTTTACCTGGGCAAATGTTGTTAGATCATAGTTTAGGATTGGCCGATATA{AT} : 1222579 333 : >>>> Target Intron 1 >>>> {e}TyrAsnSerTyrTrpTyrArgGlu : 340 71 bp {|}||| !||| ! ||||||..! ! ++ ++{e}TyrAlaSerLysTrpTyrGluLeu 1222578 : gt.........................ag{T}TACGCTTCTAAATGGTACGAACTA : 1222484 341 : SerThrLysSerGlnLysLeuIleMetLeuMetMetMetLysSerLeuGlnProCy : 359 !!..!|||.!!|||||||||||| !|||...|||!:!|||:!!!:!||||| ProValLysGlyGlnLysLeuIleTyrThrMetGlnMetArgSerIleArgProCy 1222483 : CCGGTAAAAGGGCAAAAGTTGATTTACACGATGCAAATGAGGTCCATACGGCCATG : 1222427 360 : sCysLeuSerValGlyLysIleTyrIleLeuSerMetGlnSerPheSerThrIle : 377 | |||!!!!.!||| !:!::!! :!!!:!!!::!!||||||.!!! !:!! sIleLeuThrAlaGlyGlyValHisGluMetAsnIleGluSerPheGlyIleVal 1222426 : TATATTAACAGCAGGAGGAGTGCATGAGATGAACATCGAGAGTTTCGGAATAGTA : 1222371 vulgar: CbirOr226 295 377 . KQ414851.1 1222687 1222370 - 162 M 36 108 S 0 2 5 0 2 I 0 67 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222371 1222687 162 - . gene_id 1 ; sequence CbirOr226 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1222578 1222687 . - . KQ414851.1 exonerate:protein2genome:local exon 1222578 1222687 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1222576 1222577 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222507 1222577 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1222507 1222508 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222371 1222506 . - . KQ414851.1 exonerate:protein2genome:local exon 1222371 1222506 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222371 1222687 162 - . alignment_id 1 ; Query CbirOr226 ; Align 1222688 296 108 ; Align 1222506 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr226 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 136 Query range: 120 -> 215 Target range: 1224312 -> 1224024 121 : ArgPheAlaLeuLeuTyrSerValTyrCysThrLeuSerLeuPheLeuPheLeuSe : 139 ||| |||::::::||| ! !:!! !|||!!.:!!!:!:!!|| ArgGlnLysLeuIlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSe 1224312 : agacaaaaattaattttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAG : 1224258 140 : rLeuSerLeuIleProPheAlaLeuAspIleIleLeuProLeuAsnGluSerArgP : 158 |!!! !!|||||| ! !.!||||||:!!:!! !||||||||||||!!!|||| rPheProLeuIleAsnProValLeuAspValValAlaProLeuAsnGluThrArgP 1224257 : CTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGAC : 1224201 159 : roIleValSerProTyrProAlaAsnTyr<->PheValAspValArgGluHisPhe : 175 || ! ! ! ! !|||!.!!:!||| |||:!!|||! ! !||||||||| roArgArgLeuLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPhe 1224200 : CCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTT : 1224147 176 : PheLysIleTyrTrpHisSerIleLeuAlaTrpGluIleIleIleIleGlyIleIl : 194 !:!!..:!: !!!::||| ! ! !::! ! ! ! !!: !||||| TyrSerValAsnPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIl 1224146 : TATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAAT : 1224090 195 : eThrTyrMetCysMetTyrValThrTyrIleGluHisValCysSerIlePheAlaT : 213 |.!! :!:|||:!!||| !||| |||:!!|||.!!:!:||||||. eAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaV 1224089 : CGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAG : 1224033 214 : hrIleGly : 215 .! !||| alCysGly 1224032 : TGTGTGGG : 1224025 vulgar: CbirOr226 120 215 . KQ414851.1 1224312 1224024 - 136 M 47 141 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224312 136 - . gene_id 2 ; sequence CbirOr226 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224312 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224312 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224312 136 - . alignment_id 2 ; Query CbirOr226 ; Align 1224313 121 141 ; Align 1224169 168 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr226 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 134 -> 215 Target range: 1243842 -> 1243599 135 : PheLeuPheLeuSerLeuSerLeuIleProPheAlaLeuAspIleIleLeuProLe : 153 .!.:!!|||:!!! !!!! !!||||||||| !||||||:!!:!!! !||||| IleIlePheValLeuPheProLeuIleProProIleLeuAspValValSerProLe 1243842 : ATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCT : 1243788 154 : uAsnGluSerArgProIleValSerProTyrProAlaAsnTyrPheValAspValA : 172 |||||||!!!||| !! :!!... ...|||.!. !!|||:::. uAsnGluThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspMetG 1243787 : TAATGAGACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACAtgg : 1243731 173 : rgGluHisPhePheLysIleTyrTrpHisSerIleLeuAlaTrpGluIleIleIle : 190 ..::::::|||:::...:::||| :!!!!! !! !..!! ! !!:! !!!: luLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMet 1243730 : agaagaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATG : 1243677 191 : IleGlyIleIleThrTyrMetCysMetTyrValThrTyrIleGluHisValCysSe : 209 !!:! !||||||||| ...:!:||||||..! !|||.!.|||..!|||.! MetValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGl 1243676 : ATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGG : 1243620 210 : rIlePheAlaThrIleGly : 215 !:!!||||||..! !||| yLeuPheAlaValCysGly 1243619 : CTTATTCGCTGTTTGCGGG : 1243600 vulgar: CbirOr226 134 215 . KQ414851.1 1243842 1243599 - 131 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243842 131 - . gene_id 3 ; sequence CbirOr226 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243842 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243842 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243842 131 - . alignment_id 3 ; Query CbirOr226 ; Align 1243843 135 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr226 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 133 -> 215 Target range: 1234308 -> 1234059 134 : LeuPheLeuPheLeuSerLeuSerLeuIleProPheAlaLeuAspIleIleLeuPr : 152 :!! ! :!!|||||| !:!! !!|||:!! ! !||||||:!!:!!||||| MetValValPheLeuLeuValProLeuValPheProPheLeuAspValValLeuPr 1234308 : ATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGTCGTCCTTCC : 1234254 153 : oLeuAsnGluSerArgProIleValSerProTyrProAlaAsnTyr<->PheValA : 170 ||||||||||!!!|||||| ! !..! !!:! !!.!|||||| !:! !!| oLeuAsnGluThrArgProArgGlnGlnGlyPheArgValAsnTyrLeuTyrPheA 1234253 : GTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTATATTTCG : 1234197 171 : spValArgGluHisPhePheLysIleTyrTrpHisSerIleLeuAlaTrpGluIle : 188 ||! ! !!!::!!||||||!..:!:|||!::!!.! ! !! !!.! ! :!! spGluAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaValVal 1234196 : ACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAGTCGTT : 1234143 189 : IleIleIleGlyIleIleThrTyrMetCysMetTyrValThrTyrIleGluHisVa : 207 :!!:!!!!: !||||||||| ! :!!|||:!!! ! |||.!.|||!. ValValMetIleIleIleThrValAspSerLeuTyrMetIleIleIleHisHisAl 1234142 : GTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGATAATAATTCACCATGC : 1234086 208 : lCysSerIlePheAlaThrIleGly : 215 ! !!.!!!!:||||||..! !||| aSerGlyMetPheAlaValCysGly 1234085 : CAGCGGAATGTTCGCCGTGTGCGGG : 1234060 vulgar: CbirOr226 133 215 . KQ414851.1 1234308 1234059 - 122 M 34 102 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234308 122 - . gene_id 4 ; sequence CbirOr226 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234308 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234308 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234308 122 - . alignment_id 4 ; Query CbirOr226 ; Align 1234309 134 102 ; Align 1234204 168 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr226 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 131 -> 215 Target range: 1229479 -> 1229224 132 : LeuSerLeuPheLeuPheLeuSerLeuSerLeuIleProPheAlaLeuAspIleIl : 150 !!!:!!:!!! !:!!|||||| !:!! !!|||.!! ! ||||||||||||:! PheAlaMetCysValPheLeuLeuValProLeuPheGlyProAlaLeuAspIleVa 1229479 : TTCGCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCGT : 1229425 151 : eLeuProLeuAsnGluSerArgProIleValSerProTyrProAlaAsnTyrPheV : 169 !||||||! !||||||!!!|||||| !..!! !!:! !!.!||||||.!.: lLeuProSerAsnGluThrArgProArgGlnGlnLeuPheArgValAsnTyrIleI 1229424 : CCTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAA : 1229368 170 : al<->AspValArgGluHisPhePheLysIleTyrTrpHisSerIleLeuAlaTrp : 186 !! ||| ! !!!::!!|||||| ! :!:||| !!.! !.!!! !..! lePheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPheTrpCysThr 1229367 : TTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACA : 1229314 187 : GluIleIleIleIleGlyIleIleThrTyrMetCysMetTyrValThrTyrIleGl : 205 :!!:!!:!!!!:!.!||||||||| ! :!!|||:!!! ! ||| ! IleValLeuValMetAlaIleIleThrValAspSerLeuTyrMetIleIleIleTy 1229313 : ATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGATCATAATTTA : 1229257 206 : uHisValCysSerIlePheAlaThrIleGly : 215 |||!.! !!.!!!!:||||||! ! !||| rHisAlaSerGlyMetPheAlaIleCysGly 1229256 : CCATGCCAGCGGAATGTTCGCTATATGCGGG : 1229225 vulgar: CbirOr226 131 215 . KQ414851.1 1229479 1229224 - 117 M 38 114 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229479 117 - . gene_id 5 ; sequence CbirOr226 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229225 1229479 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229479 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229479 117 - . alignment_id 5 ; Query CbirOr226 ; Align 1229480 132 114 ; Align 1229363 170 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr226 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 126 -> 215 Target range: 1240091 -> 1239821 127 : SerValTyrCysThrLeuSerLeuPheLeuPheLeuSerLeuSerLeuIleProPh : 145 |||||| !! !! ||||||:::|||||| !:!! :::...||| SerValValLeuPheSerValLeuPheIlePheLeuValValProIlePheProPr 1240091 : TCAGTCGTTTTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcctcc : 1240037 146 : eAlaLeuAspIleIleLeuProLeuAsnGluSerArgProIleValSerProTyrP : 164 |||||||||:!! !||||||||||||!!!||| !! ... ::: oLeuLeuAspIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIlePheL 1240036 : tcttctggACATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatattca : 1239980 165 : roAlaAsnTyr<->PheValAspValArgGluHisPhePheLysIleTyrTrpHis : 181 ...|||||| .!!:!!||| ! !|||!!. !.!.! ! !|||!::||| ysValAsnTyrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPheHis 1239979 : aagttaaTTACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTTCAC : 1239926 182 : SerIleLeuAlaTrpGluIleIleIleIleGlyIleIleThrTyrMetCysMetTy : 200 ! ! !! !.!! ! !:!! |||..!:!::!!!:!! ! !!:|| LeuSerTrpThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIleTy 1239925 : TTGTCTTGGACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATA : 1239869 201 : rValThrTyrIleGluHisValCysSerIlePheAlaThrIleGly : 215 |||| ! !|||.!.|||..! !!.!!:!:||||||..! !||| rValLeuLeuIleHisHisThrSerGlyLeuPheAlaValAlaGly 1239868 : CGTCCTTCTTATTCATCATACCAGCGGTCTGTTTGCTGTGGCTGgg : 1239822 vulgar: CbirOr226 126 215 . KQ414851.1 1240091 1239821 - 102 M 41 123 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240091 102 - . gene_id 6 ; sequence CbirOr226 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239822 1240091 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240091 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240091 102 - . alignment_id 6 ; Query CbirOr226 ; Align 1240092 127 123 ; Align 1239966 168 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr224PSE(S) Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 145 Query range: 121 -> 216 Target range: 1224312 -> 1224024 122 : ArgLeuPheLeuPhePhePheAlaHisCysPheLeuThrMetCysIleIleMetLe : 140 ||| |||...||| ! !:::!!..!:!!! :!! !||| ArgGlnLysLeuIlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSe 1224312 : agacaaaaattaattttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAG : 1224258 141 : uMetSerLeuMetSerPheIleLeuAspIleValLeuProLeuAsnGluSerArgP : 159 !.!. !!|||!!:!:! :!!||||||:!!||| !||||||||||||!!!|||| rPheProLeuIleAsnProValLeuAspValValAlaProLeuAsnGluThrArgP 1224257 : CTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGAC : 1224201 160 : roValLeuLeuProTyrPro<->SerTyrTyrPheValAspAlaGluGluTyrVal : 176 || ! !||| ! !||| |||||| |||:!!|||! ! ! |||:!! !! roArgArgLeuLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPhe 1224200 : CCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTT : 1224147 177 : PheGlnIlePheSerHisThrIleValAlaTrpPhePheLeuGlyIleGlyIleMe : 195 !:!...:!: !! !||| ! !..!::! !.!!! !! !|||!!: !|||!! TyrSerValAsnPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIl 1224146 : TATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAAT : 1224090 196 : tAlaHisAspGlyMetPheIleThrTyrIleGluHisIleCysSerSerPheAlaV : 214 :||| ||| !:!:!:!|||||| !||| |||:!!|||.!!! !||||||| eAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaV 1224089 : CGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAG : 1224033 215 : alIleGly : 216 || !||| alCysGly 1224032 : TGTGTGGG : 1224025 vulgar: CbirOr224PSE(S) 121 216 . KQ414851.1 1224312 1224024 - 145 M 44 132 G 0 3 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224312 145 - . gene_id 1 ; sequence CbirOr224PSE(S) ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224312 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224312 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224312 145 - . alignment_id 1 ; Query CbirOr224PSE(S) ; Align 1224313 122 132 ; Align 1224178 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr224PSE(S) Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 131 -> 216 Target range: 1243854 -> 1243599 132 : PheLeuThrMetCysIleIleMetLeuMetSerLeuMetSerPheIleLeuAspIl : 150 |||! ! ! ! |||.!!:!:|||.!. !!|||!!: !! |||||||||:! PheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleLeuAspVa 1243854 : TTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGT : 1243800 151 : eValLeuProLeuAsnGluSerArgProValLeuLeuProTyrProSerTyrTyrP : 169 !|||! !||||||||||||!!!||| !! !:!! |||. lValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuGlnTyrL 1243799 : TGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgcaatacc : 1243743 170 : heValAspAlaGluGluTyrValPheGlnIlePheSerHisThrIleValAlaTrp : 187 !. !!||| |||::: :::...:::::: !:!!||| ! !..!! ! euPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSer 1243742 : TGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGCTGGTGCTCG : 1243689 188 : PhePheLeuGlyIleGlyIleMetAlaHisAspGlyMetPheIleThrTyrIleGl : 206 |||.!. ! !!!:! !|||!!:.!! |||!.!:!:!:!:!:..! !|||.! PheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValValIleIleHi 1243688 : TTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCA : 1243632 207 : uHisIleCysSerSerPheAlaValIleGly : 216 .|||! |||.!!! !||||||||| !||| sHisThrCysGlyLeuPheAlaValCysGly 1243631 : TCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: CbirOr224PSE(S) 131 216 . KQ414851.1 1243854 1243599 - 113 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243854 113 - . gene_id 2 ; sequence CbirOr224PSE(S) ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243854 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243854 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243854 113 - . alignment_id 2 ; Query CbirOr224PSE(S) ; Align 1243855 132 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr224PSE(S) Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 123 -> 216 Target range: 1229506 -> 1229224 124 : PheLeuPhePhePheAlaHisCysPheLeuThrMetCysIleIleMetLeuMetSe : 142 .!!:!!|||! !!!.! ! !! .!!!!!.!!||||||:!!.!!:!!|||:!: ! IleValPheSerLeuAspAlaLeuLeuPheAlaMetCysValPheLeuLeuValPr 1229506 : ATCGTATTTTCCTTAGATGCTTTACTCTTCGCAATGTGTGTTTTCTTGCTGGTCCC : 1229452 143 : rLeuMetSerPheIleLeuAspIleValLeuProLeuAsnGluSerArgPro<->V : 160 !|||.!..!! !||||||||||||||||||! !||||||!!!|||||| oLeuPheGlyProAlaLeuAspIleValLeuProSerAsnGluThrArgProArgG 1229451 : ATTGTTTGGTCCAGCCCTGGACATCGTCCTTCCATCAAATGAAACTAGGCCACGGC : 1229395 161 : alLeuLeuProTyrProSerTyrTyrPheValAspAlaGluGluTyrValPheGln : 178 !! !||| ! !!:!||| .!! !!||| !! !!!:||| !!||| ! lnGlnLeuPheArgValAsnTyrIleIlePheAspGlnAlaAspTyrPhePheTyr 1229394 : AACAACTGTTCAGAGTTAACTATATAATTTTCGACCAAGCAGACTATTTTTTCTAC : 1229341 179 : IlePheSerHisThrIleValAlaTrpPhePheLeuGlyIleGlyIleMetAlaHi : 197 :!:!:!! !!!. !.!! !..! .!! !!|||! !!!:!.!|||!!:.!! ValTyrIleGlnLeuPheTrpCysThrIleValLeuValMetAlaIleIleThrVa 1229340 : GTGTATATTCAATTGTTTTGGTGTACAATCGTTCTTGTAATGGCCATTATCACCGT : 1229284 198 : sAspGlyMetPheIleThrTyrIleGluHisIleCysSerSerPheAlaValIleG : 216 |||..!:!!!:!!!:! ! ||| ! ||| ! !!.!!! !||||||:!! !| lAspSerLeuTyrMetIleIleIleTyrHisAlaSerGlyMetPheAlaIleCysG 1229283 : AGATTCATTGTACATGATCATAATTTACCATGCCAGCGGAATGTTCGCTATATGCG : 1229227 217 : ly : 216 || ly 1229226 : GG : 1229225 vulgar: CbirOr224PSE(S) 123 216 . KQ414851.1 1229506 1229224 - 106 M 36 108 G 0 3 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229506 106 - . gene_id 3 ; sequence CbirOr224PSE(S) ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229225 1229506 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229506 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229506 106 - . alignment_id 3 ; Query CbirOr224PSE(S) ; Align 1229507 124 108 ; Align 1229396 160 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr224PSE(S) Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 123 -> 216 Target range: 1234341 -> 1234059 124 : PheLeuPhePhePheAlaHisCysPheLeuThrMetCysIleIleMetLeuMetSe : 142 .!!:!!||||||! ! ! ! .!.! ! !||| :!!.!!:!!|||:!: ! IleValPhePheSerAspThrLeuLeuSerPheMetValValPheLeuLeuValPr 1234341 : ATCGTGTTCTTCTCAGATACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCC : 1234287 143 : rLeuMetSerPheIleLeuAspIleValLeuProLeuAsnGluSerArgProValL : 161 !|||:!:! ! .!!||||||:!!||||||||||||||||||!!!|||||| !! oLeuValPheProPheLeuAspValValLeuProLeuAsnGluThrArgProArgG 1234286 : ATTAGTTTTTCCATTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGAC : 1234230 162 : euLeuProTyr<->ProSerTyrTyrPheValAspAlaGluGluTyrValPheGln : 178 !! ! !!:! !!:!||| !:! !!|||! !! !!!:||| !!|||... lnGlnGlyPheArgValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSer 1234229 : AGCAAGGATTCAGAGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGC : 1234176 179 : IlePheSerHisThrIleValAlaTrpPhePheLeuGlyIleGlyIleMetAlaHi : 197 :!:!:!! !!!. ! ! !!.! !! !!:!!! !!!: !|||!!:.!! ValTyrPheGlnLeuAlaTrpGlyAlaValValValValMetIleIleIleThrVa 1234175 : GTGTACTTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGT : 1234119 198 : sAspGlyMetPheIleThrTyrIleGluHisIleCysSerSerPheAlaValIleG : 216 |||..!:!!!:!!!:! ! |||.!.||| ! !!.!!! !||||||||| !| lAspSerLeuTyrMetIleIleIleHisHisAlaSerGlyMetPheAlaValCysG 1234118 : AGACTCGTTGTACATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTGTGCG : 1234062 217 : ly : 216 || ly 1234061 : GG : 1234060 vulgar: CbirOr224PSE(S) 123 216 . KQ414851.1 1234341 1234059 - 100 M 41 123 G 0 3 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234341 100 - . gene_id 4 ; sequence CbirOr224PSE(S) ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234341 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234341 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234341 100 - . alignment_id 4 ; Query CbirOr224PSE(S) ; Align 1234342 124 123 ; Align 1234216 165 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr213 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 144 Query range: 340 -> 400 Target range: 1228545 -> 1228290 341 : TyrAsnCysAspTrpTyrAlaIleSerLeuArgSerArgGlnLeuLeuLysPheTh : 359 |||::!! ! |||||| !:!!||| !!:!! !!:!!:!:!!:!! ! .!.! TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 360 : rLeuLeuArgValThrLysProCysGlnIleThrAlaGlyLysMetTyrValMetS : 378 !! !:!!|||!.! !||||||||| :!:||||||||| !:!!|||! !|||! tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 379 : erMetGluAsnPheGlySer >>>> Target Intron 1 >>>> IleIleL : 387 :!||||||||||||!.!!:! 75 bp ! !.!!| snMetGluAsnPheAlaAsn++ ++ThrPheL 1228433 : ACATGGAGAACTTTGCAAACgt.........................agACATTCA : 1228332 388 : ysAlaCysLeuSerTyrPheThrMetLeuLeuSerLeuArg : 400 ||.!!|||:!!||||||||||||||||||:!!|||!!!||| ysThrCysMetSerTyrPheThrMetLeuMetSerPheArg 1228331 : AAACGTGCATGTCGTACTTCACAATGCTGATGTCATTTAGG : 1228291 vulgar: CbirOr213 340 400 . KQ414851.1 1228545 1228290 - 144 M 44 132 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228291 1228545 144 - . gene_id 1 ; sequence CbirOr213 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1228414 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228414 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228412 1228413 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1228339 1228413 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1228339 1228340 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228291 1228338 . - . KQ414851.1 exonerate:protein2genome:local exon 1228291 1228338 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228291 1228545 144 - . alignment_id 1 ; Query CbirOr213 ; Align 1228546 341 132 ; Align 1228339 385 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr213 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 143 Query range: 340 -> 400 Target range: 1242796 -> 1242524 341 : TyrAsnCysAspTrpTyrAlaIleSerLeuArgSerArgGlnLeuLeuLysPheTh : 359 ||||||! |||||| !! ! !!:!! !!! !!:!:!!:!!||| ! .!... TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIleVa 1242796 : TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATATAGT : 1242742 360 : rLeuLeuArgValThrLysProCysGlnIleThrAlaGlyLysMetTyrValMetS : 378 !! !:!!||| ! !|||||||||:!!:!:..!|||||| !:!:|||! !|||! lGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluMetA 1242741 : ACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAATGA : 1242685 379 : erMetGluAsnPheGlySer >>>> Target Intron 1 >>>> IleIleL : 387 :!!!:||||||||||||||| 92 bp !.!!| snIleGluAsnPheGlySer++ ++ThrPheL 1242684 : ACATTGAGAATTTTGGATCAgt.........................agacTTTCA : 1242566 388 : ysAlaCysLeuSerTyrPheThrMetLeuLeuSerLeuArg : 400 ||.!!|||:!!||||||||||||||||||||||||!!!!:! ysThrCysIleSerTyrPheThrMetLeuLeuSerPheLys 1242565 : AAACCTGCATATCGTACTTTACGATGCTCTTATCATTCAAA : 1242525 vulgar: CbirOr213 340 400 . KQ414851.1 1242796 1242524 - 143 M 44 132 5 0 2 I 0 88 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242525 1242796 143 - . gene_id 2 ; sequence CbirOr213 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1242665 1242796 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242796 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242525 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242525 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242525 1242796 143 - . alignment_id 2 ; Query CbirOr213 ; Align 1242797 341 132 ; Align 1242573 385 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr213 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 143 Query range: 340 -> 400 Target range: 1233381 -> 1233126 341 : TyrAsnCysAspTrpTyrAlaIleSerLeuArgSerArgGlnLeuLeuLysPheTh : 359 |||::!! ! |||||| !:!! !! !!:!! !!:!!:!:!!:!! ! ! TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMe 1233381 : TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGAT : 1233327 360 : rLeuLeuArgValThrLysProCysGlnIleThrAlaGlyLysMetTyrValMetS : 378 !! !:!!|||!.! !||||||||| :!:||||||||| !:!!|||! !|||! tGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetA 1233326 : GCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGA : 1233270 379 : erMetGluAsnPheGlySer >>>> Target Intron 1 >>>> IleIleL : 387 :!||||||||||||!.!!:! 75 bp !.!!| snMetGluAsnPheAlaAsn++ ++ThrPheL 1233269 : ACATGGAGAACTTTGCAAACgt.........................agaCATTCA : 1233168 388 : ysAlaCysLeuSerTyrPheThrMetLeuLeuSerLeuArg : 400 ||.!!|||:!!||||||||||||||||||:!!||||||||| ysThrCysMetSerTyrPheThrMetLeuMetSerLeuArg 1233167 : AAACGTGCATGTCATACTTCACAATGCTGATGTCACTTAGA : 1233127 vulgar: CbirOr213 340 400 . KQ414851.1 1233381 1233126 - 143 M 44 132 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233127 1233381 143 - . gene_id 3 ; sequence CbirOr213 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233250 1233381 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233381 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233127 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233127 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233127 1233381 143 - . alignment_id 3 ; Query CbirOr213 ; Align 1233382 341 132 ; Align 1233175 385 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr222 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 334 -> 376 Target range: 1228536 -> 1228410 335 : AsnTrpTyrAspThrSerLeuArgThrLysLysLeuIleLeuPheMetMetMetLy : 353 !..|||||| ! ..!||| !!:! !:!!::!:!!|||! !.!.|||...!!:!: ThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMetGlnIleAr 1228536 : ACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGATGCAAATAAG : 1228482 354 : sIleGlnAlaProCysIleLeuThrAlaGlyGlyMetPheValLeuSerMetGluT : 372 ! !! ! !||||||||||||||||||||||||:!!!:!! !:!!!:!||||||! gAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetAsnMetGluA 1228481 : GGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGAACATGGAGA : 1228425 373 : hrTyrAlaThrLeu : 376 .!!:!|||!.!:!! snPheAlaAsnVal 1228424 : ACTTTGCAAACGTT : 1228411 vulgar: CbirOr222 334 376 . KQ414851.1 1228536 1228410 - 100 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1228536 100 - . gene_id 1 ; sequence CbirOr222 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228411 1228536 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228536 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1228536 100 - . alignment_id 1 ; Query CbirOr222 ; Align 1228537 335 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr223 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 334 -> 391 Target range: 1228536 -> 1228290 335 : AlaTrpTyrGlnThrSerIleArgThrArgLysIleLeuLeuPheMetIleMetAr : 353 .!!||||||:!!..!||| !!:! !!:!::!:!!:!!! !.!.||| !!!:|| ThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMetGlnIleAr 1228536 : ACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGATGCAAATAAG : 1228482 354 : gThrArgGluProCysValLeuThrAlaGlyLysMetPheValIleSerMetAspT : 372 |.!!! !:!!||||||:!!|||||||||||| !:!!!:!! !!!:!:!|||!!:! gAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetAsnMetGluA 1228481 : GGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGAACATGGAGA : 1228425 373 : hrPheSerThr >>>> Target Intron 1 >>>> IleValArgThrSerV : 381 .!|||:!!!.! 75 bp ! ! !!!:!|||!!!: snPheAlaAsn++ ++ThrPheLysThrCysM 1228424 : ACTTTGCAAACgt.........................agACATTCAAAACGTGCA : 1228323 382 : alSerTyrPheThrMetLeuArgSerMetGln : 391 !!||||||||||||||||||! !|||.!.::! etSerTyrPheThrMetLeuMetSerPheArg 1228322 : TGTCGTACTTCACAATGCTGATGTCATTTAGG : 1228291 vulgar: CbirOr223 334 391 . KQ414851.1 1228536 1228290 - 114 M 41 123 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228291 1228536 114 - . gene_id 1 ; sequence CbirOr223 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1228414 1228536 . - . KQ414851.1 exonerate:protein2genome:local exon 1228414 1228536 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228412 1228413 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1228339 1228413 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1228339 1228340 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228291 1228338 . - . KQ414851.1 exonerate:protein2genome:local exon 1228291 1228338 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228291 1228536 114 - . alignment_id 1 ; Query CbirOr223 ; Align 1228537 335 123 ; Align 1228339 376 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr223 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 334 -> 391 Target range: 1233372 -> 1233126 335 : AlaTrpTyrGlnThrSerIleArgThrArgLysIleLeuLeuPheMetIleMetAr : 353 .!!||||||:!!..! !! !!:! !!:!::!:!!:!!! ! ||| !!!:|| ThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMetGlnIleAr 1233372 : ACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGATGCAAATAAG : 1233318 354 : gThrArgGluProCysValLeuThrAlaGlyLysMetPheValIleSerMetAspT : 372 |.!!! !:!!||||||||||||||||||||| !:!!!:!! !!!:!:!|||!!:! gAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetAsnMetGluA 1233317 : GGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGAACATGGAGA : 1233261 373 : hrPheSerThr >>>> Target Intron 1 >>>> IleValArgThrSerV : 381 .!|||:!!!.! 75 bp ! !!!:!|||!!!: snPheAlaAsn++ ++ThrPheLysThrCysM 1233260 : ACTTTGCAAACgt.........................agaCATTCAAAACGTGCA : 1233159 382 : alSerTyrPheThrMetLeuArgSerMetGln : 391 !!||||||||||||||||||! !|||:!:::! etSerTyrPheThrMetLeuMetSerLeuArg 1233158 : TGTCATACTTCACAATGCTGATGTCACTTAGA : 1233127 vulgar: CbirOr223 334 391 . KQ414851.1 1233372 1233126 - 111 M 41 123 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233127 1233372 111 - . gene_id 2 ; sequence CbirOr223 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233250 1233372 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233372 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233127 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233127 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233127 1233372 111 - . alignment_id 2 ; Query CbirOr223 ; Align 1233373 335 123 ; Align 1233175 376 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr223 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 132 -> 211 Target range: 1243836 -> 1243599 133 : LeuIleLeuPheMetLeuValProLeuGlnSerLeuLeuLeuGluSerSerLeuAs : 151 !!!:!!|||||| |||:!!|||! ! !! ! !:!!:!!..! !! ! !.! PheValLeuPheProLeuIleProProIleLeuAspValValSerProLeuAsnGl 1243836 : TTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGA : 1243782 152 : nSerThrAsnArgProLeuLeuHisArgValGluTyrTyrIleAspMetAspLysT : 170 .!!! !::!||| ! ::: :::::::::||| .!!||||||:::||| uThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspMetGluLysA 1243781 : GACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACAtggagaaga : 1243725 171 : yrTyrPheProIleLeuIleHisGlyTyrLeuThrAlaIleValCysIleSerIle : 188 :::::: ::: :!!:!! ! !! ! !:!!.!!:!! !!!:! !:!! snPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMetVal 1243724 : atttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTT : 1243671 189 : AlaIleAlaThrAspThrMetTyrValIleMetValGlnHisValCysGlyLeuPh : 207 !|||.!!! !|||.!!:!:||||||:!!!!::!!!!.|||..!||||||||||| IleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGlyLeuPh 1243670 : ATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTTATT : 1243614 208 : eThrIleIleGly : 211 |.!!:!! !||| eAlaValCysGly 1243613 : CGCTGTTTGCGGG : 1243600 vulgar: CbirOr223 132 211 . KQ414851.1 1243836 1243599 - 110 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243836 110 - . gene_id 3 ; sequence CbirOr223 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243836 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243836 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243836 110 - . alignment_id 3 ; Query CbirOr223 ; Align 1243837 133 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr223 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 122 -> 211 Target range: 1224303 -> 1224024 123 : IleIleTyrAlaSerThrLeuTyrSerAlaLeuIleLeuPheMetLeuValProLe : 141 :::|||::::::...:!!|||!::! !!.!|||:!!:!!!:!||| ! !!||||| LeuIlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLe 1224303 : ttaattttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATT : 1224249 142 : uGlnSerLeuLeuLeuGlu<-><->SerSerLeuAsnSerThrAsn<->ArgProL : 157 | !!:!! !:!!|||!!: :!! !!||||||..!|||... ||| !| uIleAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgL 1224248 : GATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGC : 1224192 158 : euLeuHisArgValGluTyr<->TyrIleAspMetAspLysTyrTyrPheProIle : 174 |||||! !! !|||...||| !:!|||||| ! !!:!!:!!!:!!:! !:!: euLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerVal 1224191 : TTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTG : 1224138 175 : LeuIleHisGlyTyrLeuThrAlaIleValCysIleSerIleAlaIleAlaThrAs : 193 !.!!||| !||| !!:!!.!||| !||| ! !!!: !||||||..!|| AsnPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAs 1224137 : AATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGA : 1224081 194 : pThrMetTyrValIleMetValGlnHisValCysGlyLeuPheThrIleIleGly : 211 |! !:!:|||:!!! !!!::!! |||:!!||||||||||||.!!:!: !||| pMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaValCysGly 1224080 : TATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: CbirOr223 122 211 . KQ414851.1 1224303 1224024 - 110 M 25 75 G 0 6 M 7 21 G 0 3 M 9 27 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224303 110 - . gene_id 4 ; sequence CbirOr223 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224303 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224303 . - . insertions 12 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224303 110 - . alignment_id 4 ; Query CbirOr223 ; Align 1224304 123 75 ; Align 1224223 148 21 ; Align 1224199 155 27 ; Align 1224169 164 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr223 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 122 -> 211 Target range: 1234338 -> 1234059 123 : IleIleTyrAlaSerThrLeuTyrSerAlaLeuIleLeuPheMetLeuValProLe : 141 :!:.!!!:!:!!..!|||||| ||| !:!!:!!:!!|||:!!||||||||||| ValPhePheSerAspThrLeuLeuSerPheMetValValPheLeuLeuValProLe 1234338 : GTGTTCTTCTCAGATACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATT : 1234284 142 : uGlnSerLeuLeuLeuGlu<-><->SerSerLeuAsnSerThrAsn<->ArgProL : 157 | ! !! !!!!|||!!: ! !!||||||..!|||... |||! !! uValPheProPheLeuAspValValLeuProLeuAsnGluThrArgProArgGlnG 1234283 : AGTTTTTCCATTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGC : 1234227 158 : euLeuHisArgValGluTyr<->TyrIleAspMetAspLysTyrTyrPheProIle : 174 ! ! !||||||.!.||| |||.!!||| ! ! |||!:!||| !:!: lnGlyPheArgValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSerVal 1234226 : AAGGATTCAGAGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTG : 1234173 175 : LeuIleHisGlyTyrLeuThrAlaIleValCysIleSerIleAlaIleAlaThrAs : 193 ! !.!!!!. ! !! ! !|||:!!||| !:!!! !||| !|||.!!..!|| TyrPheGlnLeuAlaTrpGlyAlaValValValValMetIleIleIleThrValAs 1234172 : TACTTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGA : 1234116 194 : pThrMetTyrValIleMetValGlnHisValCysGlyLeuPheThrIleIleGly : 211 |:!!:!!|||:!!|||!!::!!!!.|||!.! !!|||:!!|||.!!:!: !||| pSerLeuTyrMetIleIleIleHisHisAlaSerGlyMetPheAlaValCysGly 1234115 : CTCGTTGTACATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTGTGCGGG : 1234060 vulgar: CbirOr223 122 211 . KQ414851.1 1234338 1234059 - 100 M 25 75 G 0 6 M 7 21 G 0 3 M 9 27 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234338 100 - . gene_id 5 ; sequence CbirOr223 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234338 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234338 . - . insertions 12 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234338 100 - . alignment_id 5 ; Query CbirOr223 ; Align 1234339 123 75 ; Align 1234258 148 21 ; Align 1234234 155 27 ; Align 1234204 164 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr228 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 171 Query range: 294 -> 373 Target range: 1222687 -> 1222379 295 : GluSerSerArgTyrIleValTyrIleAlaGlyGlnLeuIleHisLeuPheTyrLe : 313 ||| !! !||| ! :!!!:!:!!!.!!..||| ...||||||... !|| GluLeuIleArgLeuAlaMetPheValValAlaGlnLysPheHisLeuLeuIleLe 1222687 : GAACTCATCAGGCTTGCGATGTTTGTCGTAGctcagaaatttcatttgctcATCCT : 1222633 314 : uSerPheGluGlyGlnLysLeuIleAspHisSerLeuGlnMetCysAsnLys{Il} : 331 ||||!!. ||||||! !|||:!!|||||||||||| !:!!..!:!!! !{||} uSerLeuProGlyGlnMetLeuLeuAspHisSerLeuGlyLeuAlaAspIle{Il} 1222632 : TAGTTTACCTGGGCAAATGTTGTTAGATCATAGTTTAGGATTGGCCGATATA{AT} : 1222579 332 : >>>> Target Intron 1 >>>> {e}TyrAsnGlySerTrpTyrGluLeu : 339 71 bp {|}||| !..!!.!|||||||||||| ++ ++{e}TyrAlaSerLysTrpTyrGluLeu 1222578 : gt.........................ag{T}TACGCTTCTAAATGGTACGAACTA : 1222484 340 : ProIleLysSerGlnLysLeuMetLeuLeuValMetMetLysSerPheArgProCy : 358 |||:!!|||.!!|||||||||!!:! ! !:!!...|||!:!|||.!.|||||||| ProValLysGlyGlnLysLeuIleTyrThrMetGlnMetArgSerIleArgProCy 1222483 : CCGGTAAAAGGGCAAAAGTTGATTTACACGATGCAAATGAGGTCCATACGGCCATG : 1222427 359 : sCysValSerAlaGlyLysIleTyrIlePheSerLeuGlnGlyPhe : 373 | :!!!!!|||||| !:!::!! .!.!:!:!!:!!.!!||| sIleLeuThrAlaGlyGlyValHisGluMetAsnIleGluSerPhe 1222426 : TATATTAACAGCAGGAGGAGTGCATGAGATGAACATCGAGAGTTTC : 1222380 vulgar: CbirOr228 294 373 . KQ414851.1 1222687 1222379 - 171 M 36 108 S 0 2 5 0 2 I 0 67 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222380 1222687 171 - . gene_id 1 ; sequence CbirOr228 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1222578 1222687 . - . KQ414851.1 exonerate:protein2genome:local exon 1222578 1222687 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1222576 1222577 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222507 1222577 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1222507 1222508 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222380 1222506 . - . KQ414851.1 exonerate:protein2genome:local exon 1222380 1222506 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222380 1222687 171 - . alignment_id 1 ; Query CbirOr228 ; Align 1222688 295 108 ; Align 1222506 332 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr228 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 135 -> 215 Target range: 1243839 -> 1243599 136 : LeuPheMetCysAlaSerLeuIleProGlnLeuLeuAsnValValLeuProLeuAs : 154 :!!|||:!:! ! !!|||||||||! !:!!|||:!!||||||! !|||||||| IlePheValLeuPheProLeuIleProProIleLeuAspValValSerProLeuAs 1243839 : ATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAA : 1243785 155 : nGluSerArgProValLeuProProTyrProGlyHisTyrPheValAspGluGluG : 173 ||||!!!||| !! !:!! ...|||.!. !!||| |||: nGluThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspMetGluL 1243784 : TGAGACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACAtggaga : 1243728 174 : luTyrPheLeuHisIlePheCysHisSerIleValAlaTrpGluIleAlaMetThr : 191 :: ||| :::::: !:!!!!! ! !..!! ! !!:.!!|||! ! ysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMet 1243727 : agaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATG : 1243674 192 : GlyIleValAlaHisAspCysMetPheLeuSerCysValGluHisGlyCysSerIl : 210 ! !|||:!!.!! |||...:!:!:!:!! ! !:!!.!.||| !|||.!!:! ValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGlyLe 1243673 : GTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTT : 1243617 211 : ePheAlaValAlaGly : 215 !|||||||||..!||| uPheAlaValCysGly 1243616 : ATTCGCTGTTTGCGGG : 1243600 vulgar: CbirOr228 135 215 . KQ414851.1 1243839 1243599 - 116 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243839 116 - . gene_id 2 ; sequence CbirOr228 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243839 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243839 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243839 116 - . alignment_id 2 ; Query CbirOr228 ; Align 1243840 136 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr228 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 120 -> 215 Target range: 1224312 -> 1224024 121 : ArgTyrSerMetGlyTyrSerLeuTyrCysPheAlaCysLeuAlaLeuPheMetCy : 139 ||| ...::: :::||| ! !:: ! !||| !:!!!:!||| ! ArgGlnLysLeuIlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSe 1224312 : agacaaaaattaattttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAG : 1224258 140 : sAlaSerLeuIleProGlnLeuLeuAsnValValLeuProLeuAsnGluSerArgP : 158 ! ! !!|||||| !! !:!!|||:!!|||||| !||||||||||||!!!|||| rPheProLeuIleAsnProValLeuAspValValAlaProLeuAsnGluThrArgP 1224257 : CTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGAC : 1224201 159 : roValLeuProProTyrProGlyHisTyr<->PheValAspGluGluGluTyrPhe : 175 || ! !! ! ! !|||! ! !||| |||:!!|||||| ! |||:!!||| roArgArgLeuLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPhe 1224200 : CCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTT : 1224147 176 : LeuHisIlePheCysHisSerIleValAlaTrpGluIleAlaMetThrGlyIleVa : 194 ! ! !:!: !! !||| ! !..!::! ! !..! !! ! !|||:! TyrSerValAsnPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIl 1224146 : TATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAAT : 1224090 195 : lAlaHisAspCysMetPheLeuSerCysValGluHisGlyCysSerIlePheAlaV : 213 !||| ||| :!:!:!:!!!!! !:!! ||| !|||.!!:!:||||||| eAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaV 1224089 : CGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAG : 1224033 214 : alAlaGly : 215 ||..!||| alCysGly 1224032 : TGTGTGGG : 1224025 vulgar: CbirOr228 120 215 . KQ414851.1 1224312 1224024 - 115 M 47 141 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224312 115 - . gene_id 3 ; sequence CbirOr228 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224312 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224312 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224312 115 - . alignment_id 3 ; Query CbirOr228 ; Align 1224313 121 141 ; Align 1224169 168 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr228 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 133 -> 215 Target range: 1234308 -> 1234059 134 : LeuAlaLeuPheMetCysAlaSerLeuIleProGlnLeuLeuAsnValValLeuPr : 152 :!!!.!:!!|||:!! !.! !!|||:!! !! !!!!|||:!!||||||||||| MetValValPheLeuLeuValProLeuValPheProPheLeuAspValValLeuPr 1234308 : ATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGTCGTCCTTCC : 1234254 153 : oLeuAsnGluSerArgProValLeuProProTyrProGlyHisTyr<->PheValA : 170 ||||||||||!!!|||||| !! !! ! !!:! !! !:!!||| !:! !!| oLeuAsnGluThrArgProArgGlnGlnGlyPheArgValAsnTyrLeuTyrPheA 1234253 : GTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTATATTTCG : 1234197 171 : spGluGluGluTyrPheLeuHisIlePheCysHisSerIleValAlaTrpGluIle : 188 |||||! !!!:||||||!!! !:!:!:!! !!!.! ! ! !!.! ! :!! spGluAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaValVal 1234196 : ACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAGTCGTT : 1234143 189 : AlaMetThrGlyIleValAlaHisAspCysMetPheLeuSerCysValGluHisGl : 207 !.!:!:! ! !|||:!!.!! |||! :!!!:!:!!! ! :!!.!.|||!. ValValMetIleIleIleThrValAspSerLeuTyrMetIleIleIleHisHisAl 1234142 : GTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGATAATAATTCACCATGC : 1234086 208 : yCysSerIlePheAlaValAlaGly : 215 ! !!.!!!!:|||||||||..!||| aSerGlyMetPheAlaValCysGly 1234085 : CAGCGGAATGTTCGCCGTGTGCGGG : 1234060 vulgar: CbirOr228 133 215 . KQ414851.1 1234308 1234059 - 105 M 34 102 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234308 105 - . gene_id 4 ; sequence CbirOr228 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234308 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234308 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234308 105 - . alignment_id 4 ; Query CbirOr228 ; Align 1234309 134 102 ; Align 1234204 168 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr218 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 168 -> 221 Target range: 1243767 -> 1243608 169 : IlePheValTyrArgValAspTyrMetValAspLeuAsnThrTyrTyrIleProIl : 187 ||| ||| ::::::...|||:!! !!|||:::... ::: :: IleGluValIleLysLeuGlnTyrLeuPheAspMetGluLysAsnPheTyrSerLe 1243767 : ATAGaagtaataaaattgcaataccTGTTCGACAtggagaagaatttttattcatt : 1243713 188 : ePheIleHisThrAlaThrCysSerPheSerThrAlaValLeuIleIleValPheA : 206 :::::!!:!!|||!.! !|||||||||! !||| !:!!:!!||||||..!.!.| uTyrValTyrThrGlyTrpCysSerPheMetThrMetMetValIleIleThrIleA 1243712 : atacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAG : 1243656 207 : spValLeuTyrLeuThrMetValGlyHisCysCysGlyLeuPheAla : 221 ||!.!||||||:!!..!!!::!! !||| ||||||||||||||| spAlaLeuTyrValValIleIleHisHisThrCysGlyLeuPheAla 1243655 : ACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCT : 1243609 vulgar: CbirOr218 168 221 . KQ414851.1 1243767 1243608 - 122 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243609 1243767 122 - . gene_id 1 ; sequence CbirOr218 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243609 1243767 . - . KQ414851.1 exonerate:protein2genome:local exon 1243609 1243767 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243609 1243767 122 - . alignment_id 1 ; Query CbirOr218 ; Align 1243768 169 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr215 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 136 Query range: 336 -> 396 Target range: 1228545 -> 1228290 337 : TyrAsnCysAsnTrpTyrAlaIleSerLeuArgSerArgGlnLeuLeuLysPheTh : 355 |||::!! !!..|||||| !:!!||| !!:!! !!:!!:!:!!:!! ! .!.! TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 356 : rLeuLeuArgAlaThrLysProCysGlnIleThrAlaGlyLysMetTyrIleMetS : 374 !! !:!!|||||| !||||||||| :!:||||||||| !:!!||| !|||! tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 375 : erMetGluAsnPheSerAla >>>> Target Intron 1 >>>> IleIleG : 383 :!||||||||||||:!! ! 75 bp ! !.!!: snMetGluAsnPheAlaAsn++ ++ThrPheL 1228433 : ACATGGAGAACTTTGCAAACgt.........................agACATTCA : 1228332 384 : lnAlaCysIleSerTyrPheThrMetLeuIleSerLeuGln : 396 !!.!!|||!!:||||||||||||||||||!!:|||!!!::! ysThrCysMetSerTyrPheThrMetLeuMetSerPheArg 1228331 : AAACGTGCATGTCGTACTTCACAATGCTGATGTCATTTAGG : 1228291 vulgar: CbirOr215 336 396 . KQ414851.1 1228545 1228290 - 136 M 44 132 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228291 1228545 136 - . gene_id 1 ; sequence CbirOr215 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1228414 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228414 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228412 1228413 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1228339 1228413 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1228339 1228340 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228291 1228338 . - . KQ414851.1 exonerate:protein2genome:local exon 1228291 1228338 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228291 1228545 136 - . alignment_id 1 ; Query CbirOr215 ; Align 1228546 337 132 ; Align 1228339 381 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr215 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 336 -> 396 Target range: 1233381 -> 1233126 337 : TyrAsnCysAsnTrpTyrAlaIleSerLeuArgSerArgGlnLeuLeuLysPheTh : 355 |||::!! !!..|||||| !:!! !! !!:!! !!:!!:!:!!:!! ! ! TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMe 1233381 : TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGAT : 1233327 356 : rLeuLeuArgAlaThrLysProCysGlnIleThrAlaGlyLysMetTyrIleMetS : 374 !! !:!!|||||| !||||||||| :!:||||||||| !:!!||| !|||! tGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetA 1233326 : GCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGA : 1233270 375 : erMetGluAsnPheSerAla >>>> Target Intron 1 >>>> IleIleG : 383 :!||||||||||||:!! ! 75 bp !.!!: snMetGluAsnPheAlaAsn++ ++ThrPheL 1233269 : ACATGGAGAACTTTGCAAACgt.........................agaCATTCA : 1233168 384 : lnAlaCysIleSerTyrPheThrMetLeuIleSerLeuGln : 396 !!.!!|||!!:||||||||||||||||||!!:||||||::! ysThrCysMetSerTyrPheThrMetLeuMetSerLeuArg 1233167 : AAACGTGCATGTCATACTTCACAATGCTGATGTCACTTAGA : 1233127 vulgar: CbirOr215 336 396 . KQ414851.1 1233381 1233126 - 135 M 44 132 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233127 1233381 135 - . gene_id 2 ; sequence CbirOr215 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233250 1233381 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233381 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233127 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233127 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233127 1233381 135 - . alignment_id 2 ; Query CbirOr215 ; Align 1233382 337 132 ; Align 1233175 381 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr215 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 134 -> 211 Target range: 1243842 -> 1243611 135 : IlePheTyrSerThrMetProIleValValSerValIleTyrLysValLeuProAl : 153 |||.!.!:! ! !.!.|||:!!:!! ! !!:!!:!: !! |||! !||| IleIlePheValLeuPheProLeuIleProProIleLeuAspValValSerProLe 1243842 : ATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCT : 1243788 154 : aAsnGluThrTyrGluAlaGlyPheLeuPheArgLeuGluHisValIleAspValG : 172 !||||||||| ... ! ! :::...:::|||:::::::!!.!!|||:::| uAsnGluThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspMetG 1243787 : TAATGAGACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACAtgg : 1243731 173 : luLysTyrPheThrLeuLeuMetLeuTyrAlaPheIleSerValPheTyrIleLeu : 190 ||||| ||| ||| :!!|||.!! ! !!! !||| ! !:!! luLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMet 1243730 : agaagaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATG : 1243677 191 : SerIleValIleAlaValAspCysIlePheValLeuCysIleGlnHisThrCysAl : 209 ! !:!!:!!|||.!!:!!|||...:!!!:!|||:!! !|||!!.|||||||||!. MetValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGl 1243676 : ATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGG : 1243620 210 : aLeuPhe : 211 !|||||| yLeuPhe 1243619 : CTTATTC : 1243612 vulgar: CbirOr215 134 211 . KQ414851.1 1243842 1243611 - 127 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243612 1243842 127 - . gene_id 3 ; sequence CbirOr215 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243612 1243842 . - . KQ414851.1 exonerate:protein2genome:local exon 1243612 1243842 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243612 1243842 127 - . alignment_id 3 ; Query CbirOr215 ; Align 1243843 135 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr227 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 130 -> 215 Target range: 1243854 -> 1243599 131 : PheLeuThrThrTyrLeuPheIleLeuMetSerLeuGluProPheIleLeuAspIl : 149 |||! ! !:!! :!!|||:!!|||.!. !!||| ||| |||||||||:! PheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleLeuAspVa 1243854 : TTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGT : 1243800 150 : eIleLeuProLeuAsnGluSerArgProIleLeuProProTyrProSerTyrTyrP : 168 !:!!! !||||||||||||!!!||| !! :!! |||. lValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuGlnTyrL 1243799 : TGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgcaatacc : 1243743 169 : heValAspThrGluGluTyrPhePheGlnIlePheLeuHisThrIleMetValTrp : 186 !. !!|||! |||::: |||:::...:::::::!!:!!||| ! ! !! ! euPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSer 1243742 : TGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGCTGGTGCTCG : 1243689 187 : ThrPheIleValIleGlyIleGlnAlaHisAspCysMetPheIleThrTyrValGl : 205 !.!.! !:!!!!:! !||| .!! |||...:!:!:!:!:..! !:!!.! PheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValValIleIleHi 1243688 : TTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCA : 1243632 206 : uHisIleCysSerSerPheAlaValValGly : 215 .|||! |||.!!! !||||||||| !||| sHisThrCysGlyLeuPheAlaValCysGly 1243631 : TCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: CbirOr227 130 215 . KQ414851.1 1243854 1243599 - 128 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243854 128 - . gene_id 1 ; sequence CbirOr227 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243854 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243854 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243854 128 - . alignment_id 1 ; Query CbirOr227 ; Align 1243855 131 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr227 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 120 -> 215 Target range: 1224312 -> 1224024 121 : ArgPheSerLeuLeuTyrThrIleTyrCysPheLeuThrThrTyrLeuPheIleLe : 139 ||| ...|||::::::::: ! !:::!!..! !! :!!!:!!!: ArgGlnLysLeuIlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSe 1224312 : agacaaaaattaattttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAG : 1224258 140 : uMetSerLeuGluProPheIleLeuAspIleIleLeuProLeuAsnGluSerArgP : 158 !.!. !!||| ! ! :!!||||||:!!:!! !||||||||||||!!!|||| rPheProLeuIleAsnProValLeuAspValValAlaProLeuAsnGluThrArgP 1224257 : CTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGAC : 1224201 159 : roIleLeuProProTyrPro<->SerTyrTyrPheValAspThrGluGluTyrPhe : 175 || ! !! ! ! !||| |||||| |||:!!||| ! ! |||:!!||| roArgArgLeuLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPhe 1224200 : CCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTT : 1224147 176 : PheGlnIlePheLeuHisThrIleMetValTrpThrPheIleValIleGlyIleGl : 194 !:!...:!: !!!!||| ! !! ! !! !! ! !! !!!: !||| TyrSerValAsnPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIl 1224146 : TATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAAT : 1224090 195 : nAlaHisAspCysMetPheIleThrTyrValGluHisIleCysSerSerPheAlaV : 213 ||| ||| :!:!:!|||||| !:!! |||:!!|||.!!! !||||||| eAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaV 1224089 : CGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAG : 1224033 214 : alValGly : 215 || !||| alCysGly 1224032 : TGTGTGGG : 1224025 vulgar: CbirOr227 120 215 . KQ414851.1 1224312 1224024 - 119 M 44 132 G 0 3 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224312 119 - . gene_id 2 ; sequence CbirOr227 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224312 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224312 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224312 119 - . alignment_id 2 ; Query CbirOr227 ; Align 1224313 121 132 ; Align 1224178 165 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr227 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 135 -> 215 Target range: 1234302 -> 1234059 136 : LeuPheIleLeuMetSerLeuGluProPheIleLeuAspIleIleLeuProLeuAs : 154 :!!|||:!:|||:!: !!|||! ! .!!||||||:!!:!!||||||||||| ValPheLeuLeuValProLeuValPheProPheLeuAspValValLeuProLeuAs 1234302 : GTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGTCGTCCTTCCGTTAAA : 1234248 155 : nGluSerArgProIleLeuProProTyr<->ProSerTyrTyrPheValAspThrG : 172 ||||!!!|||||| !! !! ! !!:! !!:!||| !:! !!||| !! nGluThrArgProArgGlnGlnGlyPheArgValAsnTyrLeuTyrPheAspGluA 1234247 : TGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTATATTTCGACGAAG : 1234191 173 : luGluTyrPhePheGlnIlePheLeuHisThrIleMetValTrpThrPheIleVal : 190 !!!:|||||||||...:!:!:!!!!!!. ! ! !! ! ..! !!:!!||| laAspTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaValValValVal 1234190 : CGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTC : 1234137 191 : IleGlyIleGlnAlaHisAspCysMetPheIleThrTyrValGluHisIleCysSe : 209 !!: !||| .!! |||! :!!!:!!!:! ! :!!.!.||| ! !!.! MetIleIleIleThrValAspSerLeuTyrMetIleIleIleHisHisAlaSerGl 1234136 : ATGATCATAATCACCGTAGACTCGTTGTACATGATAATAATTCACCATGCCAGCGG : 1234080 210 : rSerPheAlaValValGly : 215 !! !||||||||| !||| yMetPheAlaValCysGly 1234079 : AATGTTCGCCGTGTGCGGG : 1234060 vulgar: CbirOr227 135 215 . KQ414851.1 1234302 1234059 - 105 M 28 84 G 0 3 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234302 105 - . gene_id 3 ; sequence CbirOr227 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234302 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234302 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234302 105 - . alignment_id 3 ; Query CbirOr227 ; Align 1234303 136 84 ; Align 1234216 164 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr227 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 126 -> 220 Target range: 1240091 -> 1239806 127 : ThrIleTyrCysPheLeuThrThrTyrLeuPheIleLeuMetSerLeuGluProPh : 145 :!!:!! !! |||! ... ::::::|||::::!!:!: ::: ||| SerValValLeuPheSerValLeuPheIlePheLeuValValProIlePheProPr 1240091 : TCAGTCGTTTTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcctcc : 1240037 146 : eIleLeuAspIleIleLeuProLeuAsnGluSerArgProIleLeuProProTyrP : 164 :::|||||||||:!! !||||||||||||!!!||| !! ::: oLeuLeuAspIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIlePheL 1240036 : tcttctggACATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatattca : 1239980 165 : ro<->SerTyrTyrPheValAspThrGluGluTyrPhePheGlnIlePheLeuHis : 181 ::!||| .!!:!!|||! !!!:||| ! !.!. ! !!:!!!!||| ysValAsnTyrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPheHis 1239979 : aagttaaTTACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTTCAC : 1239926 182 : ThrIleMetValTrpThrPheIleValIleGlyIleGlnAlaHisAspCysMetPh : 200 ! ! !..! ! ! !:!!! !|||..!:!:! ::! !!:! !!:!: LeuSerTrpThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIleTy 1239925 : TTGTCTTGGACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATA : 1239869 201 : eIleThrTyrValGluHisIleCysSerSerPheAlaValValGlyTyrArgPheG : 219 !:!! ! !:!!.!.|||! ! !!.!! !|||||||||!.!||| |||: rValLeuLeuIleHisHisThrSerGlyLeuPheAlaValAlaGly***IlePheL 1239868 : CGTCCTTCTTATTCATCATACCAGCGGTCTGTTTGCTGTGGCTGggtaaatattca : 1239812 220 : luHis : 220 ::||| ysHis 1239811 : aacat : 1239807 vulgar: CbirOr227 126 220 . KQ414851.1 1240091 1239806 - 101 M 38 114 G 0 3 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239807 1240091 101 - . gene_id 4 ; sequence CbirOr227 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239807 1240091 . - . KQ414851.1 exonerate:protein2genome:local exon 1239807 1240091 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239807 1240091 101 - . alignment_id 4 ; Query CbirOr227 ; Align 1240092 127 114 ; Align 1239975 165 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr227 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 135 -> 215 Target range: 1229467 -> 1229224 136 : LeuPheIleLeuMetSerLeuGluProPheIleLeuAspIleIleLeuProLeuAs : 154 :!!|||:!:|||:!: !!||| ! !|||||||||:!!||||||! !|| ValPheLeuLeuValProLeuPheGlyProAlaLeuAspIleValLeuProSerAs 1229467 : GTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCGTCCTTCCATCAAA : 1229413 155 : nGluSerArgProIleLeuProProTyr<->ProSerTyrTyrPheValAspThrG : 172 ||||!!!|||||| ! !! !! !!:! !!:!||| .!! !!||| !! nGluThrArgProArgGlnGlnLeuPheArgValAsnTyrIleIlePheAspGlnA 1229412 : TGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAATTTTCGACCAAG : 1229356 173 : luGluTyrPhePheGlnIlePheLeuHisThrIleMetValTrpThrPheIleVal : 190 !!!:||||||||| ! :!:!:!:!!!!. !.!! ! ! ! ! !!:!!||| laAspTyrPhePheTyrValTyrIleGlnLeuPheTrpCysThrIleValLeuVal 1229355 : CAGACTATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACAATCGTTCTTGTA : 1229302 191 : IleGlyIleGlnAlaHisAspCysMetPheIleThrTyrValGluHisIleCysSe : 209 !!:!.!||| .!! |||! :!!!:!!!:! ! :!! ! ||| ! !!.! MetAlaIleIleThrValAspSerLeuTyrMetIleIleIleTyrHisAlaSerGl 1229301 : ATGGCCATTATCACCGTAGATTCATTGTACATGATCATAATTTACCATGCCAGCGG : 1229245 210 : rSerPheAlaValValGly : 215 !! !||||||:!! !||| yMetPheAlaIleCysGly 1229244 : AATGTTCGCTATATGCGGG : 1229225 vulgar: CbirOr227 135 215 . KQ414851.1 1229467 1229224 - 100 M 28 84 G 0 3 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229467 100 - . gene_id 5 ; sequence CbirOr227 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229225 1229467 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229467 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229467 100 - . alignment_id 5 ; Query CbirOr227 ; Align 1229468 136 84 ; Align 1229381 164 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 156 Query range: 123 -> 215 Target range: 1224303 -> 1224024 124 : LeuIlePheMetLeuTrpCysTyrIleIleSerProValPheValSerIleSerLe : 142 ||||||||| !! !::|||:!! ! !|||!:!:!!|||.!! !!|| LeuIlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLe 1224303 : ttaattttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATT : 1224249 143 : uIleProGlnIleLeuAspLeuIleAlaProLeuAsnGluSerArgPro<->IleL : 160 |||| !! !:!!||||||:!!:!!|||||||||||||||!!!|||||| ! | uIleAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgL 1224248 : GATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGC : 1224192 161 : euLeuProTyrGluAlaTyrTyrPheValAspGluGluGluTyrPhePheTyrIle : 178 |||||! ! ! ::!||| |||:!!|||||| ! |||:!!|||!:! !:!: euLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerVal 1224191 : TTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTG : 1224138 179 : PhePheHisAlaValValAlaLeuGluIleAlaIleThrGlyLeuLeuAlaHisAs : 197 !|||||| ! !..!::!:!! !..! ! ! !:!!:!!||| || AsnPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAs 1224137 : AATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGA : 1224081 198 : pCysMetLeuLeuThrTyrValGlnHisValCysSerIlePheAlaIleAlaGly : 215 | :!:! !:!!||| !:!! |||:!!|||.!!:!:||||||:!:..!||| pMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaValCysGly 1224080 : TATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: CbirOr229 123 215 . KQ414851.1 1224303 1224024 - 156 M 35 105 G 0 3 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224303 156 - . gene_id 1 ; sequence CbirOr229 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224303 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224303 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224303 156 - . alignment_id 1 ; Query CbirOr229 ; Align 1224304 124 105 ; Align 1224196 159 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 130 -> 215 Target range: 1243854 -> 1243599 131 : TyrIleIleSerProValPheValSerIleSerLeuIleProGlnIleLeuAspLe : 149 !:! !.!!||| !:!!||||||! !.!! !!|||||||||! !|||||||||:! PheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleLeuAspVa 1243854 : TTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGT : 1243800 150 : uIleAlaProLeuAsnGluSerArgProIleLeuLeuProTyrGluAlaTyrTyrP : 168 !:!!:!!||||||||||||!!!||| !! :!! ::: |||. lValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuGlnTyrL 1243799 : TGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgcaatacc : 1243743 169 : heValAspGluGluGluTyrPhePheTyrIlePhePheHisAlaValValAlaLeu : 186 !. !!||| |||::: |||::: :::::: !!:!!.!!! ! !..!! ! euPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSer 1243742 : TGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGCTGGTGCTCG : 1243689 187 : GluIleAlaIleThrGlyLeuLeuAlaHisAspCysMetLeuLeuThrTyrValGl : 205 !!:.!!!!:! !! !:!!:!!.!! |||...:!:! !:!!..! !:!!!! PheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValValIleIleHi 1243688 : TTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCA : 1243632 206 : nHisValCysSerIlePheAlaIleAlaGly : 215 .|||..!|||.!!:!!||||||:!!..!||| sHisThrCysGlyLeuPheAlaValCysGly 1243631 : TCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: CbirOr229 130 215 . KQ414851.1 1243854 1243599 - 128 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243854 128 - . gene_id 2 ; sequence CbirOr229 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243854 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243854 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243854 128 - . alignment_id 2 ; Query CbirOr229 ; Align 1243855 131 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 135 -> 215 Target range: 1234302 -> 1234059 136 : ValPheValSerIleSerLeuIleProGlnIleLeuAspLeuIleAlaProLeuAs : 154 ||||||:!! !:!! !!|||:!! !! !.!!||||||:!!:!! !|||||||| ValPheLeuLeuValProLeuValPheProPheLeuAspValValLeuProLeuAs 1234302 : GTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGTCGTCCTTCCGTTAAA : 1234248 155 : nGluSerArgProIleLeuLeuProTyrGluAla<->TyrTyrPheValAspGluG : 172 ||||!!!|||||| !! !! ! !!:!..!!.! ||| !:! !!||||||! nGluThrArgProArgGlnGlnGlyPheArgValAsnTyrLeuTyrPheAspGluA 1234247 : TGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTATATTTCGACGAAG : 1234191 173 : luGluTyrPhePheTyrIlePhePheHisAlaValValAlaLeuGluIleAlaIle : 190 !!!:||||||||| !:!:!:!|||!!. !!.! !!.! !! :!!!.!:!! laAspTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaValValValVal 1234190 : CGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTC : 1234137 191 : ThrGlyLeuLeuAlaHisAspCysMetLeuLeuThrTyrValGlnHisValCysSe : 209 ! ! !:!!:!!.!! |||! :!!! !:!!! ! :!!!!.|||!.! !!.! MetIleIleIleThrValAspSerLeuTyrMetIleIleIleHisHisAlaSerGl 1234136 : ATGATCATAATCACCGTAGACTCGTTGTACATGATAATAATTCACCATGCCAGCGG : 1234080 210 : rIlePheAlaIleAlaGly : 215 !!!:||||||:!:..!||| yMetPheAlaValCysGly 1234079 : AATGTTCGCCGTGTGCGGG : 1234060 vulgar: CbirOr229 135 215 . KQ414851.1 1234302 1234059 - 117 M 30 90 G 0 3 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234302 117 - . gene_id 3 ; sequence CbirOr229 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234302 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234302 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234302 117 - . alignment_id 3 ; Query CbirOr229 ; Align 1234303 136 90 ; Align 1234210 166 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 135 -> 215 Target range: 1229467 -> 1229224 136 : ValPheValSerIleSerLeuIleProGlnIleLeuAspLeuIleAlaProLeuAs : 154 ||||||:!! !:!! !!|||.!! !! ! !||||||:!!:!! !|||! !|| ValPheLeuLeuValProLeuPheGlyProAlaLeuAspIleValLeuProSerAs 1229467 : GTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCGTCCTTCCATCAAA : 1229413 155 : nGluSerArgProIleLeuLeuProTyrGluAlaTyrTyrPheVal<->AspGluG : 172 ||||!!!|||||| ! !! !! !!:!..!!.! !!|||.!.:!! |||:!!! nGluThrArgProArgGlnGlnLeuPheArgValAsnTyrIleIlePheAspGlnA 1229412 : TGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAATTTTCGACCAAG : 1229356 173 : luGluTyrPhePheTyrIlePhePheHisAlaValValAlaLeuGluIleAlaIle : 190 !!!:||||||||||||:!:!:!.!!!!. ! !! !..! ! :!! !:!! laAspTyrPhePheTyrValTyrIleGlnLeuPheTrpCysThrIleValLeuVal 1229355 : CAGACTATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACAATCGTTCTTGTA : 1229302 191 : ThrGlyLeuLeuAlaHisAspCysMetLeuLeuThrTyrValGlnHisValCysSe : 209 ! !!.!:!!:!!.!! |||! :!!! !:!!! ! :!! ! |||!.! !!.! MetAlaIleIleThrValAspSerLeuTyrMetIleIleIleTyrHisAlaSerGl 1229301 : ATGGCCATTATCACCGTAGATTCATTGTACATGATCATAATTTACCATGCCAGCGG : 1229245 210 : rIlePheAlaIleAlaGly : 215 !!!:|||||||||..!||| yMetPheAlaIleCysGly 1229244 : AATGTTCGCTATATGCGGG : 1229225 vulgar: CbirOr229 135 215 . KQ414851.1 1229467 1229224 - 110 M 34 102 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229467 110 - . gene_id 4 ; sequence CbirOr229 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229225 1229467 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229467 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229467 110 - . alignment_id 4 ; Query CbirOr229 ; Align 1229468 136 102 ; Align 1229363 170 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr221 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 339 -> 395 Target range: 1242784 -> 1242524 340 : TrpTyrAlaPheSerLeuAsnValArgLysValIleSerIleMetLeuLeuArgSe : 358 |||||| ! !!:!! :!!!:!|||:!!:!! !|||:!:! !:!!||||| TrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIleValGlnIleArgSe 1242784 : TGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATATAGTACAAATAAGGTC : 1242730 359 : rTyrValProIleArgIleThrAlaGlyLysLeuTyrThrLeuAsnLeuGluAsnP : 377 | ! !||| !!:!:!:..!|||||| !|||||| !:!!|||:!!||||||| rGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluMetAsnIleGluAsnP 1242729 : TGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAATGAACATTGAGAATT : 1242673 378 : heSerSer >>>> Target Intron 1 >>>> ValValArgThrSerPheS : 386 ||.!!||| 92 bp ..! !!!:!|||!!!.!.| heGlySer++ ++ThrPheLysThrCysIleS 1242672 : TTGGATCAgt.........................agacTTTCAAAACCTGCATAT : 1242554 387 : erTyrPheThrValLeuCysSerMetGln : 395 |||||||||||:!!|||! |||.!.:!! erTyrPheThrMetLeuLeuSerPheLys 1242553 : CGTACTTTACGATGCTCTTATCATTCAAA : 1242525 vulgar: CbirOr221 339 395 . KQ414851.1 1242784 1242524 - 114 M 40 120 5 0 2 I 0 88 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242525 1242784 114 - . gene_id 1 ; sequence CbirOr221 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1242665 1242784 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242784 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242525 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242525 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242525 1242784 114 - . alignment_id 1 ; Query CbirOr221 ; Align 1242785 340 120 ; Align 1242573 380 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr221 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 333 -> 395 Target range: 1228551 -> 1228290 334 : TyrIleThrGlyGlyArgTrpTyrAlaPheSerLeuAsnValArgLysValIleSe : 352 |||! ! !..!..!! !|||||| ! ! ||| !!!. !!!:!::!||||||! TyrArgTyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTy 1228551 : TACAGATACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTA : 1228497 353 : rIleMetLeuLeuArgSerTyrValProIleArgIleThrAlaGlyLysLeuTyrT : 371 !!!:|||! !:!!|||:!! !||| !! !:!:||||||||| !|||||| rMetMetGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrG 1228496 : CATGATGCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACG : 1228440 372 : hrLeuAsnLeuGluAsnPheSerSer >>>> Target Intron 1 >>>> V : 380 !:!!|||:!!|||||||||:!!!:! 75 bp . luMetAsnMetGluAsnPheAlaAsn++ ++T 1228439 : AAATGAACATGGAGAACTTTGCAAACgt.........................agA : 1228338 381 : alValArgThrSerPheSerTyrPheThrValLeuCysSerMetGln : 395 .! !!!:!|||!!!.!.||||||||||||:!!||| |||.!.::! hrPheLysThrCysMetSerTyrPheThrMetLeuMetSerPheArg 1228337 : CATTCAAAACGTGCATGTCGTACTTCACAATGCTGATGTCATTTAGG : 1228291 vulgar: CbirOr221 333 395 . KQ414851.1 1228551 1228290 - 113 M 46 138 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228291 1228551 113 - . gene_id 2 ; sequence CbirOr221 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1228414 1228551 . - . KQ414851.1 exonerate:protein2genome:local exon 1228414 1228551 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228412 1228413 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1228339 1228413 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1228339 1228340 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228291 1228338 . - . KQ414851.1 exonerate:protein2genome:local exon 1228291 1228338 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228291 1228551 113 - . alignment_id 2 ; Query CbirOr221 ; Align 1228552 334 138 ; Align 1228339 380 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr218 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 328 -> 386 Target range: 292377 -> 292551 329 : LysIleIleAspPheSerGluLysIlePheGluSerAlaTyrAsnThrLysTrpTyrA : 348 ::!:!::!: !! .!!...:!!||| .!.:!!:!!|||:!!|||:!!||||||| ArgValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrA 292378 : CGAGTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACA : 292435 349 : snMetSerIleAlaThrArgLysLeuLeuIleIleIleMetMetLysSerArgThrPr : 367 ||:!! !!! ! !! ! !::: !:!!:!!:!::!::!: ! !!!!!:! !|| snLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisPr 292436 : ATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCC : 292492 368 : oLeuValIleThrAlaGlyLysIleMetIleMetSerTyrValThrPheAsnAlaVal : 386 |:!! !:!!|||||||||||||||.!.:!!:!:|||! !||||||..!|||||| oIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaVal 292493 : GATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTA : 292549 vulgar: CbirOr218 328 386 . KQ414889.1 292377 292551 + 103 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292378 292551 103 + . gene_id 1 ; sequence CbirOr218 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292378 292551 . + . KQ414889.1 exonerate:protein2genome:local exon 292378 292551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292378 292551 103 + . alignment_id 1 ; Query CbirOr218 ; Align 292378 329 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr219 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 329 -> 387 Target range: 292377 -> 292551 330 : LysMetMetAspSerSerGluGluValHisGluSerAlaTyrAsnThrLysTrpTyrA : 349 ::!:!!:!! !!..!.!!...|||:!! .!.:!!:!!|||:!!|||:!!||||||| ArgValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrA 292378 : CGAGTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACA : 292435 350 : snMetProThrAsnGlnArgLysLeuLeuValMetIleMetMetArgSerArgLysPr : 368 ||:!!|||! !...:!! !::: !:!!|||:!!:!::!: ! !!!!!:! ! || snLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisPr 292436 : ATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCC : 292492 369 : oSerArgIleThrAlaGlyLysLeuValAsnLeuSerTyrValAsnPheSerAlaVal : 387 |! !!:!:!!||||||||||||:!! !! !||||||! !!.!|||.!!|||||| oIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaVal 292493 : GATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTA : 292549 vulgar: CbirOr219 329 387 . KQ414889.1 292377 292551 + 110 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292378 292551 110 + . gene_id 1 ; sequence CbirOr219 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292378 292551 . + . KQ414889.1 exonerate:protein2genome:local exon 292378 292551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292378 292551 110 + . alignment_id 1 ; Query CbirOr219 ; Align 292378 330 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr219 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 279 -> 387 Target range: 301712 -> 302036 280 : PheValHisValGlyAlaAsnIleSerValLeuSerIleLeuGlyPheGlnValIleT : 299 !:!||| !!:!! ! !::!:!!!:!|||:!! !.!!! ! !.!!!!.:!!:!: TyrValAspIlePheHisSerValAsnValValHisPheGlnTyrIleHisIleLeuL 301713 : TATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATATTCATATTCTGC : 301770 300 : hrAsnThrGluAspIleAsnArgValLeuLysHisValSerTyrLeuAsnAlaLeuLe : 318 !:!! !..!||| ! !|||..! !! :!!:!!..!!! ...|| euHisArgArgAspSerPheArgThrGlyThrTyrLeuGln***LysPheProPheLe 301771 : TACATCGGCGAGATTCTTTCCGAACAGGTACTTACTTACAGTAGAagtttccatttct : 301827 319 : uValAsnThrPhePheGluAsnTrpGlnGlyGlnLysMetMetAspSerSerGluGlu : 337 | |||..!||| ..! !!! ....!! ! |||! !!!!...:!! uPheAsnValPheProArgTyrLeuSerSerPheIleGlyArgAsp***CysSerGln 301828 : tttcaatGTATTTCCACGGTATTTAAGCAGCTTTATTGGTCGTGATTAGTGTAGCCAA : 301884 338 : ValHisGluSerAlaTyrAsnThrLysTrpTyrAsnMetProThrAsnGlnArgLysL : 357 :!! !..!:!!:!!|||.!.! ! ! |||||||||:!:|||.!!!!.::! ! ! IleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrA 301885 : ATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACG : 301944 358 : euLeuValMetIleMetMetArgSerArgLysProSerArgIleThrAlaGlyLysLe : 376 !|||:!!:!::!!! :!!! !|||!:! ! ||| !!!:!:!!||||||||||||:! spLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGlyLysIl 301945 : ATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAAT : 302001 377 : uValAsnLeuSerTyrValAsnPheSerAlaVal : 387 !:!!:!!||||||! !!..||||||:!!||| eIleAspLeuSerLeuAsnThrPheSerSerVal 302002 : AATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: CbirOr219 279 387 . KQ414889.1 301712 302036 + 107 M 108 324 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301713 302036 107 + . gene_id 2 ; sequence CbirOr219 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301713 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301713 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301713 302036 107 + . alignment_id 2 ; Query CbirOr219 ; Align 301713 280 324 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr217PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 61 -> 233 Target range: 194336 -> 194852 62 : AspLeuSerAlaThrPheGluCysIleProProLeuLeuIleAspGlyValCysIleI : 81 ||||||!!! ! !.!.:!! ||| !! !!! !:!!.!!..! !:!!...|||| AspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleI 194337 : GATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCA : 194394 82 : leLysLeuLeuAsnLeuValTyrAsnMetLysLysIleLysIleLeuIleIleHisIl : 100 |||||!!!! !!..:!!:!! |||! !|||:!!|||!:!.!!! !:!::!:.!.!! leLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGluMe 194395 : TCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGAT : 194451 101 : eGlnLysAspTrpGlnSerCysAlaIleLysSerGluPheGluIleLeuHisLysPhe : 119 ::!!! !.!.!::::!..! ! ! !:!!..!!!: :!!:!::!! !!.! ! tGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsnCys 194452 : GGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGC : 194508 120 : AlaGluSerGlyArgSerIleThrIleGlyTyrAlaGlyGlyIleTyrAlaPheGlyS : 139 |||:!!! !||||||! !.!!|||! ! !||| !||| !:!!!:!|||. AlaLysIleGlyArgPhePheThrThrLeuTyrLeuGly------LeuSerTyrGlyG 194509 : GCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGA------CTTTCTTACGGTG : 194562 140 : erLeuPheProLeuLeuAlaIleIleProLysIleLeuGlyAsnAspValThrSerAs : 158 !! !!!.|||! !! ! !|||:!!||| !!!:! !! !!.. !|||! !..!:! lyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGluAs 194563 : GCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGA : 194619 159 : nTyrSerThrArg<->ProValGlyPhe<->ProTyrHisValGluTyrTyrIleAsp : 175 ! !!||||||!:! |||:!! !!:! ! !!:!!||| !:! |||!!: pAsnSerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGlu 194620 : TAACAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAA : 194676 176 : LeuGluLysTyrTyrTyrProValLeuIleHisAsnTyrLeuAlaThrThrIleArgL : 195 !..! ! !||| ! !..!!!!:!! .!. ||| !!:!!:!|||! !| AspSerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleL 194677 : GACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATAT : 194736 196 : euThrIleValIleAlaSerAspThrCysValAlaIleLeuValGlnHisCysCysAl : 214 ||:!!! ! !!.!! ! !!!:!! ||||||! !:!!:!!..!|||||||||!. euSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGl 194737 : TGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGG : 194793 215 : aLeuPheSerValValArgTyrArgLeuGluHisIleGlnLysSerIleGluGlnAsp : 233 !||||||..!|||..!!!! |||:!!||| !|||... ! !!! !! !:!!||| yLeuPheGluValThrSerArgArgMetGluThrIleSerValProThrGlyLysAsp 194794 : CTTGTTCGAAGTGACCAGCAGAAGGATGGAGACTATTTCTGTGCCCACTGGGAAGGAT : 194850 vulgar: CbirOr217PSE 61 233 . KQ414889.1 194336 194852 + 113 M 71 213 G 2 0 M 28 84 G 0 3 M 4 12 G 0 3 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194337 194852 113 + . gene_id 1 ; sequence CbirOr217PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194337 194852 . + . KQ414889.1 exonerate:protein2genome:local exon 194337 194852 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 194337 194852 113 + . alignment_id 1 ; Query CbirOr217PSE ; Align 194337 62 213 ; Align 194550 135 84 ; Align 194637 163 12 ; Align 194652 167 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 135 -> 215 Target range: 1650 -> 1890 136 : ValPheValSerIleSerLeuIleProGlnIleLeuAspLeuIleAlaProLeuAsnGluSe : 156 :!!|||||||||! !!:!!! !|||!!.|||||||||:!!:!! !||| !|||||||| LeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSe 1651 : CTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAAAACGAGTC : 1711 157 : rArgProIleLeuLeuProTyrGluAlaTyrTyrPheValAspGluGluGluTyrPhePheT : 177 |||| !:!! !! ! !||| !||||||||||||..!||||||.!.:!!||| ! ! | rArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValT 1712 : ACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGT : 1774 178 : yrIlePhePheHisAlaValValAlaLeuGluIleAlaIleThrGlyLeuLeuAlaHisAsp : 197 |||||.!! ||| !!.! !!.!:!! !:!:!.!.!! !! !! !!!!||| !||| yrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrPheAlaCysAsp 1775 : ACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGAC : 1834 198 : CysMetLeuLeuThrTyrValGlnHisValCysSerIlePheAlaIleAlaGly : 215 !! ! !:!! ! !|||||||||! !|||.!!:!:!!.|||:!::!!||| ThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly 1835 : ACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGg : 1890 vulgar: CbirOr229 135 215 . KQ414921.1 1650 1890 + 156 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1651 1890 156 + . gene_id 1 ; sequence CbirOr229 ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1651 1890 . + . KQ414921.1 exonerate:protein2genome:local exon 1651 1890 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1651 1890 156 + . alignment_id 1 ; Query CbirOr229 ; Align 1651 136 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr227 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 127 -> 215 Target range: 1626 -> 1890 128 : IleTyrCysPheLeuThrThrTyrLeuPheIleLeuMetSerLeuGluProPheIleLeuAs : 148 :!: !!....!!:!! !..! !||||||:!:! !! ! !!:!! !||| !|||||||| ValAsnAlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAs 1627 : GTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGA : 1687 149 : pIleIleLeuProLeuAsnGluSerArgProIleLeuProProTyrProSerTyrTyrPheV : 169 ||||:!!|||||| !|||||||||||| !:!! ! ! !||||||:!!|||||||||. pIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheT 1688 : CATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCA : 1750 170 : alAspThrGluGluTyrPhePheGlnIlePheLeuHisThrIleMetValTrpThrPheIle : 189 .!||| !.!.:!!||| ! ! ! |||.!! !|||! ! ||| ! ! :!: hrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValVal 1751 : CCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTG : 1810 190 : ValIleGlyIleGlnAlaHisAspCysMetPheIleThrTyrValGluHisIleCysSerSe : 210 !! !! ! ! ||| !||| !! !:!||| ! !|||:!!||| !|||.!!! PheTyrValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLe 1811 : TTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATT : 1873 211 : rPheAlaValValGly : 215 !!!.|||||| !||| uLeuAlaValSerGly 1874 : GTTGGCCGTGTCCGGg : 1890 vulgar: CbirOr227 127 215 . KQ414921.1 1626 1890 + 141 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1627 1890 141 + . gene_id 1 ; sequence CbirOr227 ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1627 1890 . + . KQ414921.1 exonerate:protein2genome:local exon 1627 1890 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1627 1890 141 + . alignment_id 1 ; Query CbirOr227 ; Align 1627 128 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr224PSE(S) Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 146 -> 216 Target range: 1680 -> 1890 147 : IleLeuAspIleValLeuProLeuAsnGluSerArgProValLeuLeuProTyrProSerTy : 167 ||||||||||||:!!|||||| !|||||||||||| !||| !! ! !||||||:!!|| IleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTy 1681 : ATTTTGGACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTA : 1741 168 : rTyrPheValAspAlaGluGluTyrValPheGlnIlePheSerHisThrIleValAlaTrpP : 188 |||||||..!|||! !.!.:!!|||! ! ! ! |||.!!!!!|||! ! !!.! . rTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleL 1742 : TTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCC : 1804 189 : hePheLeuGlyIleGlyIleMetAlaHisAspGlyMetPheIleThrTyrIleGluHisIle : 208 !. ! :!! ! !! ! !.!.||| !||| !! !:!||| ! !:!::!!||| ! euValValPheTyrValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGly 1805 : TGGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGC : 1864 209 : CysSerSerPheAlaValIleGly : 216 |||.!!! !!!.|||||| !||| CysGlyLeuLeuAlaValSerGly 1865 : TGCGGATTGTTGGCCGTGTCCGGg : 1890 vulgar: CbirOr224PSE(S) 146 216 . KQ414921.1 1680 1890 + 123 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1681 1890 123 + . gene_id 1 ; sequence CbirOr224PSE(S) ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1681 1890 . + . KQ414921.1 exonerate:protein2genome:local exon 1681 1890 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1681 1890 123 + . alignment_id 1 ; Query CbirOr224PSE(S) ; Align 1681 147 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr226 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 127 -> 218 Target range: 1626 -> 1899 128 : ValTyrCysThrLeuSerLeuPheLeuPheLeuSerLeuSerLeuIleProPheAlaLeuAs : 148 ||| !!...! !:!!!!!:!!.!!||||||:!!||| ! !!:!!! !||| ! !||||| ValAsnAlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAs 1627 : GTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGA : 1687 149 : pIleIleLeuProLeuAsnGluSerArgProIleValSerProTyrProAlaAsnTyrPheV : 169 ||||:!!|||||| !|||||||||||| !:!!!.!! ! !||||||||| !!||||||. pIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheT 1688 : CATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCA : 1750 170 : alAspValArgGluHisPhePheLysIleTyrTrpHisSerIleLeuAlaTrpGluIleIle : 189 .!|||! !!.!:!!:!! ! ! ! ||| ! !|||! ! ! !!.! !:!::!: hrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValVal 1751 : CCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTG : 1810 190 : IleIleGlyIleIleThrTyrMetCysMetTyrValThrTyrIleGluHisValCysSerIl : 210 .!! !! ! !.!!.!!! ! !! |||:!! ! !:!::!!|||! !|||.!!:! PheTyrValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLe 1811 : TTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATT : 1873 211 : ePheAlaThrIleGlyPheArgIle : 218 :!!.|||..! !||| :::||| uLeuAlaValSerGly***LysIle 1874 : GTTGGCCGTGTCCGGgtaaaaaatt : 1899 vulgar: CbirOr226 127 218 . KQ414921.1 1626 1899 + 123 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1627 1899 123 + . gene_id 1 ; sequence CbirOr226 ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1627 1899 . + . KQ414921.1 exonerate:protein2genome:local exon 1627 1899 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1627 1899 123 + . alignment_id 1 ; Query CbirOr226 ; Align 1627 128 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr219 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 294 -> 401 Target range: 807266 -> 807587 295 : PheGlnValIleThrAsnThrGluAspIleAsnArgValLeuLysHisValSerTyrL : 314 |||! !||| ! !!:!|||:!!|||! ! ! !!.!|||!:! ! !! ! : PheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuM 807267 : TTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGA : 807324 315 : euAsnAlaLeuLeuValAsnThrPhePheGluAsnTrpGlnGlyGlnLysMetMetAs : 333 !! .!!||||||:!!.!. !!:!.!! ! !!:: !|||.!.! !:!: !.. etValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSe 807325 : TGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTC : 807381 334 : pSerSerGluGluValHisGluSerAlaTyrAsnThrLysTrpTyrAsnMetProThr : 352 . !!!!!||||||:!! :!!:!!||||||:!!:!! ||||||..! ! ! ! rArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGly 807382 : GCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGG : 807438 353 : AsnGlnArgLysLeuLeuValMetIleMetMetArgSerArgLysProSerArgIleT : 372 :!! ! !!:! !|||:!!:!!|||!!: |||.!!!.!..!|||! !||||||| HisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleT 807439 : CACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAA : 807498 373 : hrAlaGlyLysLeuValAsnLeuSerTyrValAsnPheSerAlaValIleArgAlaSe : 391 |||||||||||!!!||| :!!!:! ! !!!.!|||!.!! !:!!:!:!:!||||| hrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSe 807499 : CAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTC : 807555 392 : rSerSerTyrPheMetLeuLeuArgSerMet : 401 |.!!||||||.!. :!!:!!!:! !||| rGlySerTyrLeuSerValMetLysValMet 807556 : TGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: CbirOr219 294 401 . KQ414940.1 807266 807587 + 152 M 107 321 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807267 807587 152 + . gene_id 1 ; sequence CbirOr219 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807267 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807267 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807267 807587 152 + . alignment_id 1 ; Query CbirOr219 ; Align 807267 295 321 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr219 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 333 -> 387 Target range: 117785 -> 117947 334 : SerSerGluGluValHisGluSerAlaTyrAsnThrLysTrpTyrAsnMetProThrA : 353 ..!||||||! !:!! !...:!!||||||!....! |||:!! ||| ! GlnSerGluAlaIleGlyArgAlaAlaTyrThrValProTrpHisTrpTyrProArgC 117786 : CAGAGCGAAGCGATCGGTCGTGCAGCCTATACGGTGCCTTGGCATTGGTACCCTCGTT : 117843 354 : snGlnArgLysLeuLeuValMetIleMetMetArgSerArgLysProSerArgIleTh : 372 ! !||||||! ! ! !|||:!:|||!!:|||.!!!:!|||||| !|||:!:|| ysLeuArgLysProThrAsnMetLeuMetIleArgGlyGlnLysProValArgLeuTh 117844 : GCTTGCGAAAACCAACCAACATGCTGATGATCAGAGGTCAGAAACCGGTTCGTCTGAC : 117900 373 : rAlaGlyLysLeuValAsnLeuSerTyrValAsnPheSerAlaVal : 387 ||||||||||:!!|||...|||||| ! !!..|||:!!:!!||| rAlaGlyLysIleValGlyLeuSerLeuGluThrPheAlaSerVal 117901 : CGCCGGAAAAATCGTCGGACTCTCTCTGGAAACGTTTGCCTCTGTA : 117947 vulgar: CbirOr219 333 387 . KQ414940.1 117785 117947 + 111 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 117786 117947 111 + . gene_id 2 ; sequence CbirOr219 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 117786 117947 . + . KQ414940.1 exonerate:protein2genome:local exon 117786 117947 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 117786 117947 111 + . alignment_id 2 ; Query CbirOr219 ; Align 117786 334 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr221 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 283 -> 391 Target range: 807254 -> 807578 284 : ThrPheThrIlePheGlnAlaValValLysLeuSerAspProLysGluAlaLeuArgP : 303 ||| ! !:!!|||! !!.!!.!:!!!.. !!.!||| ! ! !||||||||| ThrGlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgS 807255 : ACAGGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGA : 807312 304 : heAlaSerPheThrIleCysLeuPheSerValLeuPheLeuGluSerTrpProGlyGl : 322 ! ! !.!.! !:!: !|||.!.! ! !|||!:!||| ! :!!!:: !!|||.! erPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807313 : GCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 323 : nGlnLeuSerAspTyrThrAspLysIlePheAlaTyrIleThrGlyGlyArgTrpTyr : 341 . !|||..!... |||!!::!!||| ! ! ! !! !..!! !|||||| nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 342 : AlaPheSerLeuAsnValArgLysValIleSerIleMetLeuLeuArgSerTyrValP : 361 !! ! ! !:!!!.! !!:!! !:!! !:!:!!::!!! !|||.!! !! !| ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 362 : roIleArgIleThrAlaGlyLysLeuTyrThrLeuAsnLeuGluAsnPheSerSerVa : 380 || !||||||||||||||||||!!! ! !!:!!|||||| !.!|||!.!..!:! roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 381 : lValArgThrSerPheSerTyrPheThrValLeu : 391 !:!!!:!.!!||| !||||||.!.:!!|||:!! eLeuLysAlaSerGlySerTyrLeuSerValMet 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATG : 807578 vulgar: CbirOr221 283 391 . KQ414940.1 807254 807578 + 120 M 108 324 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807255 807578 120 + . gene_id 1 ; sequence CbirOr221 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807255 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807255 807578 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807255 807578 120 + . alignment_id 1 ; Query CbirOr221 ; Align 807255 284 324 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr218 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 306 -> 398 Target range: 807305 -> 807581 307 : LeuArgProAlaSerTyrLeuAsnGlyLeuLeuIleAsnValPhePheGluAsnTrpG : 326 |||||| ! ! ! :!! !|||||||||.!.:!!!:!.!! ! !!:: LeuArgSerPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrA 807306 : TTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACG : 807363 327 : lnGlyGlnLysIleIleAspPheSerGluLysIlePheGluSerAlaTyrAsnThrLy : 345 !|||.!.! !:!! ... !!!|||:!!||| :!!:!!||||||:!!:!! laGlyAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLe 807364 : CGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCT : 807420 346 : sTrpTyrAsnMetSerIleAlaThrArgLysLeuLeuIleIleIleMetMetLysSer : 364 ||||||..! ! !.!! !!:! !|||:!!:!:|||!!: ::!.!! uTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGly 807421 : TTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGA : 807477 365 : ArgThrProLeuValIleThrAlaGlyLysIleMetIleMetSerTyrValThrPheA : 384 !.!:!!|||! ! !|||||||||||||||.!!:!: |||!:! ! !!||||||! AsnSerProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheL 807478 : AATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCA : 807537 385 : snAlaValLeuArgAlaSerSerSerTyrPheMetLeuLeuArg : 398 !.! !:!!|||!:!||||||.!!||||||.!. :!!:!!!:! ysGluIleLeuLysAlaSerGlySerTyrLeuSerValMetLys 807538 : AGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: CbirOr218 306 398 . KQ414940.1 807305 807581 + 129 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807306 807581 129 + . gene_id 1 ; sequence CbirOr218 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807306 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807306 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807306 807581 129 + . alignment_id 1 ; Query CbirOr218 ; Align 807306 307 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr224PSE(S) Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 120 -> 216 Target range: 32461 -> 32749 121 : ArgArgLeuPheLeuPhePhePheAlaHisCysPheLeuThrMetCysIleIleMetLeu : 140 ||| ...||||||.!! ! !.! ! !:!:!! !!!:! ! ! ! :!! ArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIle 32462 : cgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATA : 32519 141 : MetSerLeuMetSerPheIleLeuAspIleValLeuProLeuAsnGluSerArgProVal : 160 :!!..!!!!:!! !!!:!|||:!!|||:!::!! !||||||||||||||||||! ! ! ValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHis 32520 : GTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCAT : 32579 161 : LeuLeuProTyrProSerTyrTyrPheValAspAlaGluGluTyrValPheGlnIlePhe : 180 :!!||||||||| !!.!! ! |||||||||||| ::::::||| ... !||| ValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAla 32580 : GTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCG : 32639 181 : SerHisThrIleValAlaTrpPhePheLeuGlyIleGlyIleMetAlaHisAspGlyMet : 200 ! !|||! !:!!! !.!! !.!! ! !! ! ! !! !||| |||...::: LeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIle 32640 : TTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaatt : 32699 201 : PheIleThrTyrIleGluHisIleCysSerSerPheAlaValIleGly : 216 |||||| :::::: |||:!!|||:!!!.!||| !:!!:!!||| PheIlePhePheMetPheHisValCysAlaLysPheAsnIleLeuGly 32700 : ttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATTCTCGGG : 32749 vulgar: CbirOr224PSE(S) 120 216 . KQ415081.1 32461 32749 + 140 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32462 32749 140 + . gene_id 1 ; sequence CbirOr224PSE(S) ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32462 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32462 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32462 32749 140 + . alignment_id 1 ; Query CbirOr224PSE(S) ; Align 32462 121 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr221 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 0 -> 48 Target range: 29613 -> 29757 1 : MetAspSerValGlnAlaGlnTyrMetArgIleAsnGlnPheLeuMetCysLeuIleGly : 20 ||||||! ! !!||| !!:!||| !:!|||!:!:!!||||||:!! !||||||||| MetAspLeuPheGlnAsnArgTyrTyrLysIleSerLysPheLeuLeuIleLeuIleGly 29614 : ATGGACTTGTTTCAGAATCGATACTACAAGATCAGCAAGTTCTTGTTGATCTTGATCGGT : 29671 21 : GluTrpProTyrGlnAspAsnTrpGluLysIleLeuIleGlnIleIlePheValProAla : 40 :!!|||||||||.!. !!:::||| |||!!:! !! ||||||.!!.!! ! !! ! GlnTrpProTyrAspHisSerTrpThrLysMetCysLysGlnIlePheIleTyrSerTyr 29672 : CAGTGGCCCTACGATCACTCGTGGACCAAGATGTGCAAGCAGATCTTCATTTATTCGTAC : 29731 41 : ValPheSerGlnAlaValLeuGln : 48 :!!!!.||| ! !! !:!!||| LeuLeuSerTyrLeuGlyValGln 29732 : CTGTTGTCTTATCTCGGCGTGCAG : 29757 vulgar: CbirOr221 0 48 . KQ415081.1 29613 29757 + 101 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 29614 29757 101 + . gene_id 1 ; sequence CbirOr221 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 29614 29757 . + . KQ415081.1 exonerate:protein2genome:local exon 29614 29757 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 29614 29757 101 + . alignment_id 1 ; Query CbirOr221 ; Align 29614 1 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr228 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 136 -> 215 Target range: 32512 -> 32749 137 : PheMetCysAlaSerLeuIleProGlnLeuLeuAsnValValLeuProLeuAsnGluSer : 156 !:! !.!..!!!!:!:||| ! :!!:!!:!!|||:!! !||||||||||||||| TyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSer 32513 : TACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCC : 32570 157 : ArgProValLeuProProTyrProGlyHisTyrPheValAspGluGluGluTyrPheLeu : 176 |||! ! !:!!! !|||||| !!|||.!.||||||||||||:::::::::||||||||| ArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeu 32571 : CGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttccta : 32630 177 : HisIlePheCysHisSerIleValAlaTrpGluIleAlaMetThrGlyIleValAlaHis : 196 ||| ! |||! !:!!! !.!! :!!!.!:!!|||! ! !..!||| ProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaVal 32631 : ccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtc : 32690 197 : AspCysMetPheLeuSerCysValGluHisGlyCysSerIlePheAlaValAlaGly : 215 ||| :::|||::: ::! |||! !|||:!!! !||| !:!! !||| AspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIleLeuGly 32691 : gattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATTCTCGGG : 32749 vulgar: CbirOr228 136 215 . KQ415081.1 32512 32749 + 147 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32513 32749 147 + . gene_id 1 ; sequence CbirOr228 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32513 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32513 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32513 32749 147 + . alignment_id 1 ; Query CbirOr228 ; Align 32513 137 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr228 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 331 -> 387 Target range: 26746 -> 27626 332 : TyrAsnGlySerTrpTyrGluLeuProIleLysSerGlnLysLeuMetLeuLeuValMet : 351 ||| !!||||||||||||! ! !|||! ::!:!!|||||||||:!!|||||||||:!! TyrTyrGlySerTrpTyrAlaAlaProThrArgAlaGlnLysLeuLeuLeuLeuValLeu 26747 : TATTACGGAAGCTGGTACGCGGCGCCAACGCGGGCACAAAAATTGCTGCTGCTGGTGTTG : 26804 352 : MetLysSerPheArgProCysCysValSerAlaGlyLysIleTyrIlePheSerLeuGln : 371 ..!|||!!!.!. !|||||| !!:!!||||||!.!|||||| !! ! ||||||||| GlnLysCysMetValProCysSerLeuSerAlaAlaLysIleValThrAlaSerLeuGln 26805 : CAGAAATGCATGGTGCCTTGTAGTTTATCGGCCGCTAAAATTGTCACCGCATCGCTGCAA : 26864 372 : GlyPheCysThr >>>> Target Intron 1 >>>> IleValGlnAlaSerValS : 382 !!:!..!||| 712 bp |||||||||.!!||||||| IleTyrAlaThr++ ++IleValGlnThrSerValS 26865 : ATCTATGCTACGgt.........................agATCGTCCAGACGTCGGTAT : 27609 383 : erTyrPheThrMetLeu : 387 ||||||||:!!:!!||| erTyrPheSerValLeu 27610 : CTTACTTCTCTGTGCTG : 27626 vulgar: CbirOr228 331 387 . KQ415081.1 26746 27626 + 145 M 44 132 5 0 2 I 0 708 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 26747 27626 145 + . gene_id 2 ; sequence CbirOr228 ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 26747 26878 . + . KQ415081.1 exonerate:protein2genome:local exon 26747 26878 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 26879 26880 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 26879 27590 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 27589 27590 . + . intron_id 0 ; splice_site "aG" KQ415081.1 exonerate:protein2genome:local cds 27591 27626 . + . KQ415081.1 exonerate:protein2genome:local exon 27591 27626 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 26747 27626 145 + . alignment_id 2 ; Query CbirOr228 ; Align 26747 332 132 ; Align 27591 376 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr227 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 121 -> 215 Target range: 32467 -> 32749 122 : PheSerLeuLeuTyrThrIleTyrCysPheLeuThrThrTyrLeuPheIleLeuMetSer : 141 ||| |||:!! !||| !!:! !:!:!! !! !!:!! !!:! !:!!:!!..! PhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIleValGln 32468 : tttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAA : 32525 142 : LeuGluProPheIleLeuAspIleIleLeuProLeuAsnGluSerArgProIleLeuPro : 161 !!! !|||!:!|||:!!|||:!:||| !||||||||||||||||||! ! !:!!! ! PheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHisValLeu 32526 : TTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTG : 32585 162 : ProTyrProSerTyrTyrPheValAspThrGluGluTyrPhePheGlnIlePheLeuHis : 181 |||||| !!.!! ! |||||||||||| ::::::||||||... !||| |||||| ProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHis 32586 : CCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCAC : 32645 182 : ThrIleMetValTrpThrPheIleValIleGlyIleGlnAlaHisAspCysMetPheIle : 201 ! !:!! !..! |||.!! !:!!! ! ! ! !||| ||| :::|||||| MetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIle 32646 : ATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcata : 32705 202 : ThrTyrValGluHisIleCysSerSerPheAlaValValGly : 215 :::::! |||:!!|||:!!!.!||| !:!!:!!||| PhePheMetPheHisValCysAlaLysPheAsnIleLeuGly 32706 : ttcttcatGTTCCACGTTTGCGCCAAATTCAATATTCTCGGG : 32749 vulgar: CbirOr227 121 215 . KQ415081.1 32467 32749 + 172 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32468 32749 172 + . gene_id 1 ; sequence CbirOr227 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32468 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32468 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32468 32749 172 + . alignment_id 1 ; Query CbirOr227 ; Align 32468 122 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr226 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 119 -> 215 Target range: 32461 -> 32749 120 : ArgArgPheAlaLeuLeuTyrSerValTyrCysThrLeuSerLeuPheLeuPheLeuSer : 139 ||| ||| |||:!! !!!!! !!:! !:!!.!!:!!|||! !!:! !! ! ArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIle 32462 : cgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATA : 32519 140 : LeuSerLeuIleProPheAlaLeuAspIleIleLeuProLeuAsnGluSerArgProIle : 159 :!!..!!!!:!:|||!:! !:!!|||:!:||| !||||||||||||||||||! ! ! ValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHis 32520 : GTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCAT : 32579 160 : ValSerProTyrProAlaAsnTyrPheValAspValArgGluHisPhePheLysIleTyr : 179 ||| !|||||| !!!.!.!.|||||||||||| :::::::::|||... !||| ValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAla 32580 : GTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCG : 32639 180 : TrpHisSerIleLeuAlaTrpGluIleIleIleIleGlyIleIleThrTyrMetCysMet : 199 ! !|||! !:!! !.!! :!! !:!:! ! ! !! .!! ::: LeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIle 32640 : TTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaatt : 32699 200 : TyrValThrTyrIleGluHisValCysSerIlePheAlaThrIleGly : 215 :::::: :::::: |||||||||:!!! !||| !! !:!!||| PheIlePhePheMetPheHisValCysAlaLysPheAsnIleLeuGly 32700 : ttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATTCTCGGG : 32749 vulgar: CbirOr226 119 215 . KQ415081.1 32461 32749 + 139 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32462 32749 139 + . gene_id 1 ; sequence CbirOr226 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32462 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32462 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32462 32749 139 + . alignment_id 1 ; Query CbirOr226 ; Align 32462 120 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr225 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 121 -> 217 Target range: 32461 -> 32749 122 : ArgArgPheSerLeuIleTyrLeuValTyrCysPheLeuAlaValValIlePheMetSer : 141 ||| ||| |||||| ! !! !!:! !:!:!!!.!:!! !! !!:! ! ! ArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIle 32462 : cgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATA : 32519 142 : MetSerLeuValProTyrIleLeuAsnIleValArgProLeuAsnGlnSerArgProIle : 161 :!!..!!!!:!!|||||||||:!!:!!:!::!! !|||||||||:!!||||||! ! ! ValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHis 32520 : GTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCAT : 32579 162 : LeuProProTyrArgGlyTyrTyrPheIleAspSerGlnGluHisPhePheGlnIleLeu : 181 :!!! !|||||| !||| ! ||||||:!!|||...|||::::::|||... !||| ! ValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAla 32580 : GTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCG : 32639 182 : TrpHisSerIleValGlyTrpGluValValValAlaAlaValValAlaHisAspSerLeu : 201 ! !|||! !:!!! ! ! :!!! !:!!.!!!.!!.!..!||| ||||||::: LeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIle 32640 : TTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaatt : 32699 202 : PheValThrTyrValGluHisIleCysSerMetPheAlaLeuIleGly : 217 |||::: :::::! |||:!!|||:!!! ||| !:!!:!!||| PheIlePhePheMetPheHisValCysAlaLysPheAsnIleLeuGly 32700 : ttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATTCTCGGG : 32749 vulgar: CbirOr225 121 217 . KQ415081.1 32461 32749 + 171 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32462 32749 171 + . gene_id 1 ; sequence CbirOr225 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32462 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32462 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32462 32749 171 + . alignment_id 1 ; Query CbirOr225 ; Align 32462 122 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 173 Query range: 119 -> 215 Target range: 32461 -> 32749 120 : ArgLeuPheAlaLeuIlePheMetLeuTrpCysTyrIleIleSerProValPheValSer : 139 |||...||| |||||| !! !!:: |||||| !! ! ! !!:!!.!! ! ArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIle 32462 : cgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATA : 32519 140 : IleSerLeuIleProGlnIleLeuAspLeuIleAlaProLeuAsnGluSerArgProIle : 159 :!:..!!!!:!:||| ! |||:!!|||:!!||||||||||||||||||||||||! ! ! ValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHis 32520 : GTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCAT : 32579 160 : LeuLeuProTyrGluAlaTyrTyrPheValAspGluGluGluTyrPhePheTyrIlePhe : 179 :!!|||||||||! !.! ! ||||||||||||:::::::::||||||... ||| ValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAla 32580 : GTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCG : 32639 180 : PheHisAlaValValAlaLeuGluIleAlaIleThrGlyLeuLeuAlaHisAspCysMet : 199 !!.||| !:!!! !.!!:!! :!!!.!:!:|||! ! ! !||| ||| ::: LeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIle 32640 : TTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaatt : 32699 200 : LeuLeuThrTyrValGlnHisValCysSerIlePheAlaIleAlaGly : 215 ...::: :::::! |||||||||:!!! !||| !||| !||| PheIlePhePheMetPheHisValCysAlaLysPheAsnIleLeuGly 32700 : ttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATTCTCGGG : 32749 vulgar: CbirOr229 119 215 . KQ415081.1 32461 32749 + 173 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32462 32749 173 + . gene_id 1 ; sequence CbirOr229 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32462 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32462 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32462 32749 173 + . alignment_id 1 ; Query CbirOr229 ; Align 32462 120 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr217PSE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 165 -> 219 Target range: 22137 -> 22299 166 : PheProTyrHisValGluTyrTyrIleAspLeuGluLysTyrTyrTyrProValLeuIle : 185 .!!|||!:!!!. ||||||:::...||| !|||||| !! !:!!:!!:!: IleProPheGlnGlyGluTyrPhePheAspGlnGluLysAsnMetValPheIleIleLeu 22138 : ATTCCGTTTCAaggggaatattttttcgaccAAGAGAAAAATATGGTGTTCATTATACTG : 22195 186 : HisAsnTyrLeuAlaThrThrIleArgLeuThrIleValIleAlaSerAspThrCysVal : 205 |||! |||.!!..!||||||! !! ! !|||!.!:!! !!!!|||! ! !:!! HisMetIleLeuThrValThrIleThrHisCysIleAlaValMetThrAspMetIleLeu 22196 : CACATGATACTCACAGTTACAATCACACATTGCATTGCTGTAATGACTGATATGATTTTG : 22255 206 : AlaIleLeuValGlnHisCysCysAlaLeuPheSerValVal : 219 !:!!|||..!..!|||..!||||||||||||:!!|||||| LeuValLeuThrMetHisAlaCysAlaLeuPheAlaValVal 22256 : CTAGTTTTAACCATGCATGCCTGTGCCTTGTTCGCTGTTGTT : 22299 vulgar: CbirOr217PSE 165 219 . KQ415081.1 22137 22299 + 106 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 22138 22299 106 + . gene_id 1 ; sequence CbirOr217PSE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 22138 22299 . + . KQ415081.1 exonerate:protein2genome:local exon 22138 22299 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 22138 22299 106 + . alignment_id 1 ; Query CbirOr217PSE ; Align 22138 166 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr227 Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 127 -> 215 Target range: 202 -> 466 128 : IleTyrCysPheLeuThrThrTyrLeuPheIleLeuMetSerLeuGluProPheIleLeuAspI : 149 :!: !!....!!:!! !..! !||||||:!:! !! ! !!:!! !||| !|||||||||| ValAsnAlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspI 203 : GTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACA : 266 150 : leIleLeuProLeuAsnGluSerArgProIleLeuProProTyrProSerTyrTyrPheValAs : 170 ||:!!|||||| !|||||||||||| !:!! ! ! !||||||:!!|||||||||..!|| leLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAs 267 : TTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGA : 329 171 : pThrGluGluTyrPhePheGlnIlePheLeuHisThrIleMetValTrpThrPheIleValIle : 191 | !.!.:!!||| ! ! ! |||.!! !|||! ! ||| ! ! :!: !! ! pGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyr 330 : CGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTAC : 392 192 : GlyIleGlnAlaHisAspCysMetPheIleThrTyrValGluHisIleCysSerSerPheAlaV : 213 ! ! ! ||| !||| !! !:!||| ! !|||:!!||| !|||.!!! !!!.|||| ValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaV 393 : GTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCG : 458 214 : alValGly : 215 || !||| alSerGly 459 : TGTCCGGg : 466 vulgar: CbirOr227 127 215 . LHQN01023902.1 202 466 + 141 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 203 466 141 + . gene_id 1 ; sequence CbirOr227 ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 203 466 . + . LHQN01023902.1 exonerate:protein2genome:local exon 203 466 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 203 466 141 + . alignment_id 1 ; Query CbirOr227 ; Align 203 128 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr224PSE(S) Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 146 -> 216 Target range: 256 -> 466 147 : IleLeuAspIleValLeuProLeuAsnGluSerArgProValLeuLeuProTyrProSerTyrT : 168 ||||||||||||:!!|||||| !|||||||||||| !||| !! ! !||||||:!!|||| IleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrT 257 : ATTTTGGACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATT : 320 169 : yrPheValAspAlaGluGluTyrValPheGlnIlePheSerHisThrIleValAlaTrpPhePh : 189 |||||..!|||! !.!.:!!|||! ! ! ! |||.!!!!!|||! ! !!.! .!. ! yrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuVa 321 : ATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGT : 383 190 : eLeuGlyIleGlyIleMetAlaHisAspGlyMetPheIleThrTyrIleGluHisIleCysSer : 210 :!! ! !! ! !.!.||| !||| !! !:!||| ! !:!::!!||| !|||.!! lValPheTyrValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGly 384 : GGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGA : 446 211 : SerPheAlaValIleGly : 216 ! !!!.|||||| !||| LeuLeuAlaValSerGly 447 : TTGTTGGCCGTGTCCGGg : 466 vulgar: CbirOr224PSE(S) 146 216 . LHQN01023902.1 256 466 + 123 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 257 466 123 + . gene_id 1 ; sequence CbirOr224PSE(S) ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 257 466 . + . LHQN01023902.1 exonerate:protein2genome:local exon 257 466 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 257 466 123 + . alignment_id 1 ; Query CbirOr224PSE(S) ; Align 257 147 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr226 Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 127 -> 218 Target range: 202 -> 475 128 : ValTyrCysThrLeuSerLeuPheLeuPheLeuSerLeuSerLeuIleProPheAlaLeuAspI : 149 ||| !!...! !:!!!!!:!!.!!||||||:!!||| ! !!:!!! !||| ! !||||||| ValAsnAlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspI 203 : GTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACA : 266 150 : leIleLeuProLeuAsnGluSerArgProIleValSerProTyrProAlaAsnTyrPheValAs : 170 ||:!!|||||| !|||||||||||| !:!!!.!! ! !||||||||| !!||||||..!|| leLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAs 267 : TTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGA : 329 171 : pValArgGluHisPhePheLysIleTyrTrpHisSerIleLeuAlaTrpGluIleIleIleIle : 191 |! !!.!:!!:!! ! ! ! ||| ! !|||! ! ! !!.! !:!::!:.!! ! pGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyr 330 : CGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTAC : 392 192 : GlyIleIleThrTyrMetCysMetTyrValThrTyrIleGluHisValCysSerIlePheAlaT : 213 ! ! !.!!.!!! ! !! |||:!! ! !:!::!!|||! !|||.!!:!:!!.|||. ValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaV 393 : GTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCG : 458 214 : hrIleGlyPheArgIle : 218 .! !||| :::||| alSerGly***LysIle 459 : TGTCCGGgtaaaaaatt : 475 vulgar: CbirOr226 127 218 . LHQN01023902.1 202 475 + 123 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 203 475 123 + . gene_id 1 ; sequence CbirOr226 ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 203 475 . + . LHQN01023902.1 exonerate:protein2genome:local exon 203 475 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 203 475 123 + . alignment_id 1 ; Query CbirOr226 ; Align 203 128 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 135 -> 215 Target range: 226 -> 466 136 : ValPheValSerIleSerLeuIleProGlnIleLeuAspLeuIleAlaProLeuAsnGluSerA : 157 :!!|||||||||! !!:!!! !|||!!.|||||||||:!!:!! !||| !|||||||||| LeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerA 227 : CTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAAAACGAGTCAC : 290 158 : rgProIleLeuLeuProTyrGluAlaTyrTyrPheValAspGluGluGluTyrPhePheTyrIl : 178 || !:!! !! ! !||| !||||||||||||..!||||||.!.:!!||| ! ! ||||| rgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIl 291 : GAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACAT : 353 179 : ePhePheHisAlaValValAlaLeuGluIleAlaIleThrGlyLeuLeuAlaHisAspCysMet : 199 |.!! ||| !!.! !!.!:!! !:!:!.!.!! !! !! !!!!||| !||| !! eIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrPheAlaCysAspThrSer 354 : AATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGT : 416 200 : LeuLeuThrTyrValGlnHisValCysSerIlePheAlaIleAlaGly : 215 ! !:!! ! !|||||||||! !|||.!!:!:!!.|||:!::!!||| TyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly 417 : TACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGg : 466 vulgar: CbirOr229 135 215 . LHQN01023902.1 226 466 + 156 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 227 466 156 + . gene_id 1 ; sequence CbirOr229 ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 227 466 . + . LHQN01023902.1 exonerate:protein2genome:local exon 227 466 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 227 466 156 + . alignment_id 1 ; Query CbirOr229 ; Align 227 136 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr226 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 126 -> 215 Target range: 4975 -> 5242 127 : SerValTyrCysThrLeuSerLeuPheLeuPheLeuSerLeuSerLeuIleProPheAlaLe : 147 !!!|||:!! :!!|||!!! ! !||||||:!!!!!||| !!!!!:!: !! !|| ThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLe 4976 : ACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCT : 5036 148 : uAspIleIleLeuProLeuAsnGluSerArgProIleValSerProTyrProAlaAsnTyrP : 168 |||||||:!!:!!||||||||||||!!!||| !! :!!! ! !||||||||| !!|||| uAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrP 5037 : GGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATT : 5099 169 : heValAspValArgGluHisPhePheLysIleTyrTrpHisSerIleLeuAlaTrpGluIle : 188 ||||||||! ! !:!!:!! !!:! !||| !!|||! ! !|||!.! !! !!!: heValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMet 5100 : TCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATG : 5159 189 : IleIleIleGlyIleIleThrTyrMetCysMetTyrValThrTyrIleGluHisValCysSe : 209 :!!||| !! !.!! !.!!! ! ..!! |||||| ! !:!::!!|||!.!|||.! LeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGl 5160 : CTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGG : 5222 210 : rIlePheAlaThrIleGly : 215 !:!:!!.|||! ! !||| yLeuLeuAlaIleAlaGly 5223 : ATTGTTGGCCATTGCAGGG : 5242 vulgar: CbirOr226 126 215 . LHQN01025741.1 4975 5242 + 134 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4976 5242 134 + . gene_id 1 ; sequence CbirOr226 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4976 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4976 5242 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4976 5242 134 + . alignment_id 1 ; Query CbirOr226 ; Align 4976 127 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr225 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 127 -> 217 Target range: 11465 -> 11735 128 : TyrLeuValTyrCysPheLeuAlaValValIlePheMetSerMetSerLeuValProTyr : 147 !:!! !||| !!...!:!:!!..! ! !!:!:|||!!:..!:!! !!! !..! !! PheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArg 11466 : TTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGA : 11523 148 : IleLeuAsnIleValArgProLeuAsnGlnSerArgProIleLeuProProTyrArgGly : 167 :!::!!||| !!:! !!! !||| !!!!! ! !:!:! ! ! ! ! !||| LeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuGlnPheValIleProGly 11524 : TTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGA : 11583 168 : TyrTyrPheIleAspSerGlnGluHisPhePheGlnIleLeuTrpHisSerIleValGly : 187 |||||||||:!!|||..! !|||:!!!:!!:! ! |||:!! |||.!!! ! ! TyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThr 11584 : TATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACA : 11643 188 : TrpGluValValValAlaAlaValValAlaHisAspSerLeuPheValThrTyrValGlu : 207 !:!!||||||!.!!.! ! !||| !|||!!! !!:!:!!..! |||:!! ValLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGln 11644 : GTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAA : 11703 208 : HisIleCysSerMetPheAlaLeuIleGly : 217 |||! !|||.!!:!!||||||:!! !||| HisThrCysGlyLeuPheAlaValAlaGly 11704 : CACACTTGCGGACTGTTCGCCGTGGCCGGG : 11735 vulgar: CbirOr225 127 217 . LHQN01025741.1 11465 11735 + 110 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11466 11735 110 + . gene_id 1 ; sequence CbirOr225 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11466 11735 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11466 11735 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11466 11735 110 + . alignment_id 1 ; Query CbirOr225 ; Align 11466 128 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr224PSE(S) Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 123 -> 216 Target range: 4963 -> 5242 124 : PheLeuPhePhePheAlaHisCysPheLeuThrMetCysIleIleMetLeuMetSerLeuMe : 144 ||| !||| !.!||| ! ||| ! ..!:!!.!!|||! !:!! !!!!!:! PheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheVa 4964 : TTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGT : 5024 145 : tSerPheIleLeuAspIleValLeuProLeuAsnGluSerArgProValLeuLeuProTyrP : 165 !||| ||||||||||||:!!:!!||||||||||||!!!||| !! !|||!!! !|||| lSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrP 5025 : GTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATC : 5087 166 : roSerTyrTyrPheValAspAlaGluGluTyrValPheGlnIlePheSerHisThrIleVal : 185 ||:!!|||||||||||||||! !!!::!!||| !!:! !||| ! .!!|||! ! !:!! roAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeu 5088 : CAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTT : 5147 186 : AlaTrpPhePheLeuGlyIleGlyIleMetAlaHisAspGlyMetPheIleThrTyrIleGl : 206 !.! ! ! .!.||| ! !! !.!! ||| !|||!.!! !:!:!: ! !:!::! ValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGl 5148 : GTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCA : 5210 207 : uHisIleCysSerSerPheAlaValIleGly : 216 !||| !|||.!!! !!!.|||:!! !||| nHisAlaCysGlyLeuLeuAlaIleAlaGly 5211 : ACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5242 vulgar: CbirOr224PSE(S) 123 216 . LHQN01025741.1 4963 5242 + 158 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4964 5242 158 + . gene_id 1 ; sequence CbirOr224PSE(S) ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4964 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4964 5242 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4964 5242 158 + . alignment_id 1 ; Query CbirOr224PSE(S) ; Align 4964 124 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 222 Query range: 87 -> 215 Target range: 4770 -> 5242 88 : ArgIleLysTyrLeuThrAspHisLeuLeuAspAspTrpLysLysLeuGluSerProGluGl : 108 !:!:!:||||||||| !! ! :!!! !!!:||||||!:! :!! !||| !!!:|| GlnLeuLysTyrLeuLeuGlyLysIleTyrGluAspTrpArgAlaMetThrSerGluAspGl 4771 : CAGCTGAAATATCTTCTTGGAAAGATCTACGAAGACTGGAGAGCCATGACGTCGGAGGATGA : 4831 109 : uTyrLysIleMetLysAlaTyrAlaAlaAsnGlyArgLeuPheAlaLeuIlePheMet{L} : 128 |||||||||||||! ! !||||||! !!!.|||! !!!! !!.!:!!:!!!:!!!:{|} uTyrLysIleMetThrLysTyrAlaGluLysGlyIlePheSerValIleLeuTyrIle{L}+ 4832 : GTACAAGATCATGACGAAATACGCGGAGAAAGGGATTTTCAGTGTCATACTCTATATT{C}g : 4892 129 : >>>> Target Intron 1 >>>> {eu}TrpCysTyrIleIleSerProValPheVal : 138 88 bp {||} ! :!! !:!! !!:!!|||:!! + ++{eu}HisIleSerLeuCysAlaAlaLeuPheMet 4893 : t.........................ag{TG}CATATATCGTTATGCGCCGCTCTATTTATG : 5009 139 : SerIleSerLeuIleProGlnIleLeuAspLeuIleAlaProLeuAsnGluSerArgProIl : 159 !!!:!: !!!!!:!: !!! !|||||||||:!!:!! !||||||||||||!!!||| !! CysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaAr 5010 : TGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACG : 5072 160 : eLeuLeuProTyrGluAlaTyrTyrPheValAspGluGluGluTyrPhePheTyrIlePheP : 180 |||!!! !||| !|||||||||||||||||||||!!::!!||| !!:!! ||| ! gLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValG 5073 : GTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAG : 5135 181 : heHisAlaValValAlaLeuGluIleAlaIleThrGlyLeuLeuAlaHisAspCysMetLeu : 200 ||| ! !:!!!.!:!!! !!!: !|||:!!! !!!!! !||| !|||..!! ! ! lyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyr 5136 : GGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTAC : 5195 201 : LeuThrTyrValGlnHisValCysSerIlePheAlaIleAlaGly : 215 :!! ! !|||||||||!.!|||.!!:!:!!.|||||||||||| ValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5196 : GTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5242 vulgar: CbirOr229 87 215 . LHQN01025741.1 4770 5242 + 222 M 40 120 S 0 1 5 0 2 I 0 84 3 0 2 S 1 2 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4771 5242 222 + . gene_id 1 ; sequence CbirOr229 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 4771 4891 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4771 4891 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 4892 4893 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 4892 4979 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 4978 4979 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 4980 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4980 5242 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4771 5242 222 + . alignment_id 1 ; Query CbirOr229 ; Align 4771 88 120 ; Align 4982 129 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 163 Query range: 135 -> 215 Target range: 1591 -> 1831 136 : ValPheValSerIleSerLeuIleProGlnIleLeuAspLeuIleAlaProLeuAsnGluSe : 156 :!!|||..!|||:!::!!:!!! |||!:::!!||||||||||||:!!||| !|||||||| IlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSe 1592 : ATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATC : 1652 157 : rArgProIleLeuLeuProTyrGluAlaTyrTyrPheValAspGluGluGluTyrPhePheT : 177 |||| !:!! !!!! !||| ||||||||| !:!!||||||||||||:!!!:!!:! rArgGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrI 1653 : GCGTGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAGGAACATTATTACA : 1715 178 : yrIlePhePheHisAlaValValAlaLeuGluIleAlaIleThrGlyLeuLeuAlaHisAsp : 197 !:!:.!. !||| !:!! !!.!:!! :!!!.!.!! !! !! !:!!:!! !||| leLeuMetGlyHisMetLeuCysValIleThrValValPhePheValTyrIleSerCysAsp 1716 : TTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTCTACATCTCCTGTGAC : 1775 198 : CysMetLeuLeuThrTyrValGlnHisValCysSerIlePheAlaIleAlaGly : 215 !!:! !:!!!.! !|||||||||!.!|||.!!:!!.!. !:!!:!!||| ThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnValSerGly 1776 : ACGATCTACATGAATATCGTGCAACACGCGTGCGGATTACTGAACGTCTCTGGG : 1831 vulgar: CbirOr229 135 215 . LHQN01025741.1 1591 1831 + 163 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1592 1831 163 + . gene_id 2 ; sequence CbirOr229 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1592 1831 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1592 1831 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1592 1831 163 + . alignment_id 2 ; Query CbirOr229 ; Align 1592 136 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 125 -> 215 Target range: 11465 -> 11735 126 : PheMetLeuTrpCysTyrIleIleSerProValPheValSerIleSerLeuIleProGln : 145 ||| :!! ...|||||| !||| !:!!|||:!!..!:!: !!! !! !!!:! PheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArg 11466 : TTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGA : 11523 146 : IleLeuAspLeuIleAlaProLeuAsnGluSerArgProIleLeuLeuProTyrGluAla : 165 :!::!!:!!! ! ! ! !!! !||| !!!!! ! !:!:! !!!! ! !.! LeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuGlnPheValIleProGly 11524 : TTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGA : 11583 166 : TyrTyrPheValAspGluGluGluTyrPhePheTyrIlePhePheHisAlaValValAla : 185 ||||||||||||||||||! !||||||!:!!:!||||||.!..!!|||!.!..! !.!! TyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThr 11584 : TATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACA : 11643 186 : LeuGluIleAlaIleThrGlyLeuLeuAlaHisAspCysMetLeuLeuThrTyrValGln : 205 :!! !|||!.!:!:..!! !! !! !||| !||| !! ! !:!!..! |||||| ValLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGln 11644 : GTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAA : 11703 206 : HisValCysSerIlePheAlaIleAlaGly : 215 |||..!|||.!!:!:||||||:!:|||||| HisThrCysGlyLeuPheAlaValAlaGly 11704 : CACACTTGCGGACTGTTCGCCGTGGCCGGG : 11735 vulgar: CbirOr229 125 215 . LHQN01025741.1 11465 11735 + 139 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11466 11735 139 + . gene_id 3 ; sequence CbirOr229 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11466 11735 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11466 11735 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11466 11735 139 + . alignment_id 3 ; Query CbirOr229 ; Align 11466 126 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr227 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 126 -> 215 Target range: 4975 -> 5242 127 : ThrIleTyrCysPheLeuThrThrTyrLeuPheIleLeuMetSerLeuGluProPheIleLe : 147 |||:!::!! ! ||| !.!! !||||||!!:! !:!! !!!!!! ! !! ||||| ThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLe 4976 : ACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCT : 5036 148 : uAspIleIleLeuProLeuAsnGluSerArgProIleLeuProProTyrProSerTyrTyrP : 168 |||||||:!!:!!||||||||||||!!!||| !! ||| ! !||||||:!!||||||| uAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrP 5037 : GGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATT : 5099 169 : heValAspThrGluGluTyrPhePheGlnIlePheLeuHisThrIleMetValTrpThrPhe : 188 |||||||| !!!::!!||| !!:! !||| ! !|||! ! !:!:||| !..!.!. heValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMet 5100 : TCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATG : 5159 189 : IleValIleGlyIleGlnAlaHisAspCysMetPheIleThrTyrValGluHisIleCysSe : 209 :!!:!! !! !.!! ||| !|||..!! !:!:!: ! !|||:!!||| !|||.! LeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGl 5160 : CTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGG : 5222 210 : rSerPheAlaValValGly : 215 !! !!!.|||:!!!.!||| yLeuLeuAlaIleAlaGly 5223 : ATTGTTGGCCATTGCAGGG : 5242 vulgar: CbirOr227 126 215 . LHQN01025741.1 4975 5242 + 155 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4976 5242 155 + . gene_id 1 ; sequence CbirOr227 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4976 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4976 5242 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4976 5242 155 + . alignment_id 1 ; Query CbirOr227 ; Align 4976 127 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr227 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 125 -> 215 Target range: 11465 -> 11735 126 : TyrThrIleTyrCysPheLeuThrThrTyrLeuPheIleLeuMetSerLeuGluProPhe : 145 !:! !!:!: !!...!:!:!! !:!!!:!|||||||||! !:!! !!! ! ! !! PheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArg 11466 : TTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGA : 11523 146 : IleLeuAspIleIleLeuProLeuAsnGluSerArgProIleLeuProProTyrProSer : 165 :!::!!:!! ! ! !!! !||| !!!!! ! !:!:! ! ! ! |||.!! LeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuGlnPheValIleProGly 11524 : TTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGA : 11583 166 : TyrTyrPheValAspThrGluGluTyrPhePheGlnIlePheLeuHisThrIleMetVal : 185 ||||||||||||||| !! !||||||!:!!:! ! |||.!.|||||| !! ..! TyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThr 11584 : TATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACA : 11643 186 : TrpThrPheIleValIleGlyIleGlnAlaHisAspCysMetPheIleThrTyrValGlu : 205 !.!!:!!|||:!:! ! ! ||| !||| !! !:!!!:..! |||:!! ValLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGln 11644 : GTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAA : 11703 206 : HisIleCysSerSerPheAlaValValGly : 215 |||! !|||.!! !|||||||||!.!||| HisThrCysGlyLeuPheAlaValAlaGly 11704 : CACACTTGCGGACTGTTCGCCGTGGCCGGG : 11735 vulgar: CbirOr227 125 215 . LHQN01025741.1 11465 11735 + 116 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11466 11735 116 + . gene_id 2 ; sequence CbirOr227 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11466 11735 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11466 11735 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11466 11735 116 + . alignment_id 2 ; Query CbirOr227 ; Align 11466 126 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr228 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 168 Query range: 126 -> 215 Target range: 4975 -> 5242 127 : SerLeuTyrCysPheAlaCysLeuAlaLeuPheMetCysAlaSerLeuIleProGlnLeuLe : 147 !!!:!!:!! ! !||| !||||||||||||||| ! !!!!!:!: !!! !:!!|| ThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLe 4976 : ACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCT : 5036 148 : uAsnValValLeuProLeuAsnGluSerArgProValLeuProProTyrProGlyHisTyrP : 168 |:!!:!!:!!:!!||||||||||||!!!||| !! !||| ! !||||||!.!:!!|||| uAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrP 5037 : GGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATT : 5099 169 : heValAspGluGluGluTyrPheLeuHisIlePheCysHisSerIleValAlaTrpGluIle : 188 |||||||||||!!::!!||| !! ! ||| ! ! |||! ! !:!!!.! !! !!!: heValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMet 5100 : TCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATG : 5159 189 : AlaMetThrGlyIleValAlaHisAspCysMetPheLeuSerCysValGluHisGlyCysSe : 209 !!!::!!! !.!! !||| !|||..!! !:!:!!! !..!|||:!!|||!.!|||.! LeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGl 5160 : CTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGG : 5222 210 : rIlePheAlaValAlaGly : 215 !:!:!!.|||:!!|||||| yLeuLeuAlaIleAlaGly 5223 : ATTGTTGGCCATTGCAGGG : 5242 vulgar: CbirOr228 126 215 . LHQN01025741.1 4975 5242 + 168 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4976 5242 168 + . gene_id 1 ; sequence CbirOr228 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4976 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4976 5242 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4976 5242 168 + . alignment_id 1 ; Query CbirOr228 ; Align 4976 127 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr228 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 125 -> 215 Target range: 11465 -> 11735 126 : TyrSerLeuTyrCysPheAlaCysLeuAlaLeuPheMetCysAlaSerLeuIleProGln : 145 !:! !!:!! !!...!:! !|||! ! !||||||!!: !.! !!! !! !!!:! PheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArg 11466 : TTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGA : 11523 146 : LeuLeuAsnValValLeuProLeuAsnGluSerArgProValLeuProProTyrProGly : 165 |||:!!||| ! ! ! !!! !||| !!!!! ! !:!!! ! ! ! |||||| LeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuGlnPheValIleProGly 11524 : TTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGA : 11583 166 : HisTyrPheValAspGluGluGluTyrPheLeuHisIlePheCysHisSerIleValAla : 185 :!!|||||||||||||||! !||||||!:!! !:!!|||.!. !|||.!!! !.!! TyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThr 11584 : TATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACA : 11643 186 : TrpGluIleAlaMetThrGlyIleValAlaHisAspCysMetPheLeuSerCysValGlu : 205 !|||!.!:!!..!! ! ! !||| !||| !! !:!:!! ! |||:!! ValLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGln 11644 : GTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAA : 11703 206 : HisGlyCysSerIlePheAlaValAlaGly : 215 ||| !|||.!!:!:||||||||||||||| HisThrCysGlyLeuPheAlaValAlaGly 11704 : CACACTTGCGGACTGTTCGCCGTGGCCGGG : 11735 vulgar: CbirOr228 125 215 . LHQN01025741.1 11465 11735 + 122 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11466 11735 122 + . gene_id 2 ; sequence CbirOr228 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11466 11735 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11466 11735 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11466 11735 122 + . alignment_id 2 ; Query CbirOr228 ; Align 11466 126 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr223 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 162 -> 213 Target range: 11588 -> 11741 163 : TyrTyrIleAspMetAspLysTyrTyrPheProIleLeuIleHisGlyTyrLeuThrAla : 182 |||!:!:!!||| ! :!!||||||!:! !|||:!!:!!|||||| ! !|||!.! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrVal 11589 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTT : 11646 183 : IleValCysIleSerIleAlaIleAlaThrAspThrMetTyrValIleMetValGlnHis : 202 :!::!! :!: !:!: ! !||| !||||||! |||:!!:!!:!!||||||||| LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 11647 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 11706 203 : ValCysGlyLeuPheThrIleIleGlyGlnGlu : 213 ..!||||||||||||.!!:!: !||| !||| ThrCysGlyLeuPheAlaValAlaGly***Glu 11707 : ACTTGCGGACTGTTCGCCGTGGCCGGGTGAGAA : 11741 vulgar: CbirOr223 162 213 . LHQN01025741.1 11588 11741 + 135 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11589 11741 135 + . gene_id 1 ; sequence CbirOr223 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11589 11741 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11589 11741 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11589 11741 135 + . alignment_id 1 ; Query CbirOr223 ; Align 11589 163 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr223 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 154 -> 211 Target range: 5071 -> 5242 155 : ArgProLeuLeuHisArgValGluTyrTyrIleAspMetAspLysTyrTyrPheProIleLe : 175 ||| !!!!:!!:!!! !!.! ! |||!:!:!!||| !|||||||||:!!!:! !|||:! ArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleVa 5072 : CGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGT : 5132 176 : uIleHisGlyTyrLeuThrAlaIleValCysIleSerIleAlaIleAlaThrAspThrMetT : 196 ! ||| !||||||..!!.!:!!:!! !||||||:!! ! !||| !|||.!!! | lGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnT 5133 : AGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATT : 5195 197 : yrValIleMetValGlnHisValCysGlyLeuPheThrIleIleGly : 211 ||||| ! |||||||||!.!|||||||||!!..!!||| !||| yrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5196 : ACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5242 vulgar: CbirOr223 154 211 . LHQN01025741.1 5071 5242 + 127 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5072 5242 127 + . gene_id 2 ; sequence CbirOr223 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5072 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5072 5242 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5072 5242 127 + . alignment_id 2 ; Query CbirOr223 ; Align 5072 155 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr222 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 153 -> 229 Target range: 5062 -> 5290 154 : ThrArgProLeuLeuLeuHisLysValLysTyrTyrTyrIleAspIleAspLysTyrTyrPh : 174 |||||| !!! !|||!!! ! ! ! ||||||!:!:!!||| |||||||||:!!!: ThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTy 5063 : ACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTA : 5123 175 : eLeuIleTrpIleHisGlyTyrLeuAlaSerLeuIleCysGlyThrTrpIleIleAlaAlaA : 195 !|||||| ||| !||||||!.! !:!!!!: ! !:!! .!! !|||..!| rLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysA 5124 : CTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCG : 5186 196 : spAlaThrPheMetIlePheValGlnHisAlaCysGlyLeuPheIleValThrThrValArg : 215 |||||!.!!:!:!! ! !|||||||||||||||||||||!!. !:!!.!! ! ! ! spAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***Leu 5187 : ATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTA : 5246 216 : IleGluArgValIleGlnGlnLysGlyCysLeuThrArgAsp : 229 :!!:!! !! !:!!..!:!!!!.|||! !||| !|||:!! ValGlnGlyGlnLeuMetGluAsnGlyPheLeuTyrArgAsn 5247 : GTTCAAGGACAATTAATGGAAAATGGTTTTCTTTATAGAAAT : 5290 vulgar: CbirOr222 153 229 . LHQN01025741.1 5062 5290 + 124 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5063 5290 124 + . gene_id 1 ; sequence CbirOr222 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5063 5290 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5063 5290 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5063 5290 124 + . alignment_id 1 ; Query CbirOr222 ; Align 5063 154 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr222 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 163 -> 211 Target range: 11585 -> 11729 164 : TyrTyrTyrIleAspIleAspLysTyrTyrPheLeuIleTrpIleHisGlyTyrLeuAla : 183 ||||||!:!:!!||| !! :!!||||||!:!! !||| :!!|||||| ! !.!! TyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThr 11586 : TATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACA : 11643 184 : SerLeuIleCysGlyThrTrpIleIleAlaAlaAspAlaThrPheMetIlePheValGln : 203 !|||||| ! !..! ! ! !|||..!|||.!!!:!!:!|||:!!.!.|||||| ValLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGln 11644 : GTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAA : 11703 204 : HisAlaCysGlyLeuPheIleVal : 211 |||.!!|||||||||||| !||| HisThrCysGlyLeuPheAlaVal 11704 : CACACTTGCGGACTGTTCGCCGTG : 11729 vulgar: CbirOr222 163 211 . LHQN01025741.1 11585 11729 + 115 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11586 11729 115 + . gene_id 2 ; sequence CbirOr222 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11586 11729 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11586 11729 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11586 11729 115 + . alignment_id 2 ; Query CbirOr222 ; Align 11586 164 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr223 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 162 -> 213 Target range: 1134 -> 981 163 : TyrTyrIleAspMetAspLysTyrTyrPheProIleLeuIleHisGlyTyrLeuThrAlaIl : 183 |||!:!:!!||| ! :!!||||||!:! !|||:!!:!!|||||| ! !|||!.!:! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLe 1134 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTT : 1074 184 : eValCysIleSerIleAlaIleAlaThrAspThrMetTyrValIleMetValGlnHisValC : 204 ::!! :!: !:!: ! !||| !||||||! |||:!!:!!:!!|||||||||..!| uIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrC 1073 : GATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTT : 1011 205 : ysGlyLeuPheThrIleIleGlyGlnGlu : 213 |||||||||||.!!:!: !||| !||| ysGlyLeuPheAlaValAlaGly***Glu 1010 : GCGGACTGTTCGCCGTGGCCGGGTGAGAA : 982 vulgar: CbirOr223 162 213 . LHQN01027734.1 1134 981 - 135 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 982 1134 135 - . gene_id 1 ; sequence CbirOr223 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 982 1134 . - . LHQN01027734.1 exonerate:protein2genome:local exon 982 1134 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 982 1134 135 - . alignment_id 1 ; Query CbirOr223 ; Align 1135 163 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr222 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 163 -> 211 Target range: 1137 -> 993 164 : TyrTyrTyrIleAspIleAspLysTyrTyrPheLeuIleTrpIleHisGlyTyrLeuAlaSe : 184 ||||||!:!:!!||| !! :!!||||||!:!! !||| :!!|||||| ! !.!! TyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrVa 1137 : TATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGT : 1077 185 : rLeuIleCysGlyThrTrpIleIleAlaAlaAspAlaThrPheMetIlePheValGlnHisA : 205 !|||||| ! !..! ! ! !|||..!|||.!!!:!!:!|||:!!.!.|||||||||. lLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisT 1076 : TTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACA : 1014 206 : laCysGlyLeuPheIleVal : 211 !!|||||||||||| !||| hrCysGlyLeuPheAlaVal 1013 : CTTGCGGACTGTTCGCCGTG : 994 vulgar: CbirOr222 163 211 . LHQN01027734.1 1137 993 - 115 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 994 1137 115 - . gene_id 1 ; sequence CbirOr222 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 994 1137 . - . LHQN01027734.1 exonerate:protein2genome:local exon 994 1137 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 994 1137 115 - . alignment_id 1 ; Query CbirOr222 ; Align 1138 164 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr227 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 125 -> 215 Target range: 1257 -> 987 126 : TyrThrIleTyrCysPheLeuThrThrTyrLeuPheIleLeuMetSerLeuGluProPheIl : 146 !:! !!:!: !!...!:!:!! !:!!!:!|||||||||! !:!! !!! ! ! !! !! PheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArgMe 1257 : TTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGAAT : 1197 147 : eLeuAspIleIleLeuProLeuAsnGluSerArgProIleLeuProProTyrProSerTyrT : 167 ::!!:!! ! ! !!! !||| !!!!! ! !:!:! ! ! ! |||.!!|||| tValAsnSerTyrLysThrGlnAsnIleThrProSerLeuProValValValProGlyTyrT 1196 : GGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGATATT : 1134 168 : yrPheValAspThrGluGluTyrPhePheGlnIlePheLeuHisThrIleMetValTrpThr : 187 ||||||||||| !! !||||||!:!!:! ! |||.!.|||||| !! ..! ! yrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeu 1133 : ACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTG : 1074 188 : PheIleValIleGlyIleGlnAlaHisAspCysMetPheIleThrTyrValGluHisIleCy : 208 .!!:!!|||:!:! ! ! ||| !||| !! !:!!!:..! |||:!!|||! !|| IleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCy 1073 : ATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTG : 1011 209 : sSerSerPheAlaValValGly : 215 |.!! !|||||||||!.!||| sGlyLeuPheAlaValAlaGly 1010 : CGGACTGTTCGCCGTGGCCGGG : 988 vulgar: CbirOr227 125 215 . LHQN01027734.1 1257 987 - 116 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 988 1257 116 - . gene_id 1 ; sequence CbirOr227 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 988 1257 . - . LHQN01027734.1 exonerate:protein2genome:local exon 988 1257 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 988 1257 116 - . alignment_id 1 ; Query CbirOr227 ; Align 1258 126 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 138 Query range: 125 -> 215 Target range: 1257 -> 987 126 : PheMetLeuTrpCysTyrIleIleSerProValPheValSerIleSerLeuIleProGlnIl : 146 ||| :!! ...|||||| !||| !:!!|||:!!..!:!: !!! !! !!!:!!! PheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArgMe 1257 : TTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGAAT : 1197 147 : eLeuAspLeuIleAlaProLeuAsnGluSerArgProIleLeuLeuProTyrGluAlaTyrT : 167 ::!!:!!! ! ! ! !!! !||| !!!!! ! !:!:! !:!! ! !.!|||| tValAsnSerTyrLysThrGlnAsnIleThrProSerLeuProValValValProGlyTyrT 1196 : GGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGATATT : 1134 168 : yrPheValAspGluGluGluTyrPhePheTyrIlePhePheHisAlaValValAlaLeuGlu : 187 ||||||||||||||! !||||||!:!!:!||||||.!..!!|||!.!..! !.!!:!! ! yrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeu 1133 : ACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTG : 1074 188 : IleAlaIleThrGlyLeuLeuAlaHisAspCysMetLeuLeuThrTyrValGlnHisValCy : 208 |||!.!:!:..!! !! !! !||| !||| !! ! !:!!..! |||||||||..!|| IleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCy 1073 : ATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTG : 1011 209 : sSerIlePheAlaIleAlaGly : 215 |.!!:!:||||||:!:|||||| sGlyLeuPheAlaValAlaGly 1010 : CGGACTGTTCGCCGTGGCCGGG : 988 vulgar: CbirOr229 125 215 . LHQN01027734.1 1257 987 - 138 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 988 1257 138 - . gene_id 1 ; sequence CbirOr229 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 988 1257 . - . LHQN01027734.1 exonerate:protein2genome:local exon 988 1257 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 988 1257 138 - . alignment_id 1 ; Query CbirOr229 ; Align 1258 126 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr225 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 127 -> 217 Target range: 1257 -> 987 128 : TyrLeuValTyrCysPheLeuAlaValValIlePheMetSerMetSerLeuValProTyrIl : 148 !:!! !||| !!...!:!:!!..! ! !!:!:|||!!:..!:!! !!! !..! !! !! PheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArgMe 1257 : TTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGAAT : 1197 149 : eLeuAsnIleValArgProLeuAsnGlnSerArgProIleLeuProProTyrArgGlyTyrT : 169 ::!!||| !!:! !!! !||| !!!!! ! !:!:! ! ! ! ! !||||||| tValAsnSerTyrLysThrGlnAsnIleThrProSerLeuProValValValProGlyTyrT 1196 : GGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGATATT : 1134 170 : yrPheIleAspSerGlnGluHisPhePheGlnIleLeuTrpHisSerIleValGlyTrpGlu : 189 |||||:!!|||..! !|||:!!!:!!:! ! |||:!! |||.!!! ! ! ! yrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeu 1133 : ACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTG : 1074 190 : ValValValAlaAlaValValAlaHisAspSerLeuPheValThrTyrValGluHisIleCy : 210 :!!||||||!.!!.! ! !||| !|||!!! !!:!:!!..! |||:!!|||! !|| IleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCy 1073 : ATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTG : 1011 211 : sSerMetPheAlaLeuIleGly : 217 |.!!:!!||||||:!! !||| sGlyLeuPheAlaValAlaGly 1010 : CGGACTGTTCGCCGTGGCCGGG : 988 vulgar: CbirOr225 127 217 . LHQN01027734.1 1257 987 - 110 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 988 1257 110 - . gene_id 1 ; sequence CbirOr225 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 988 1257 . - . LHQN01027734.1 exonerate:protein2genome:local exon 988 1257 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 988 1257 110 - . alignment_id 1 ; Query CbirOr225 ; Align 1258 128 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr228 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 125 -> 215 Target range: 1257 -> 987 126 : TyrSerLeuTyrCysPheAlaCysLeuAlaLeuPheMetCysAlaSerLeuIleProGlnLe : 146 !:! !!:!! !!...!:! !|||! ! !||||||!!: !.! !!! !! !!!:!:! PheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArgMe 1257 : TTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGAAT : 1197 147 : uLeuAsnValValLeuProLeuAsnGluSerArgProValLeuProProTyrProGlyHisT : 167 !:!!||| ! ! ! !!! !||| !!!!! ! !:!!! ! ! ! ||||||:!!| tValAsnSerTyrLysThrGlnAsnIleThrProSerLeuProValValValProGlyTyrT 1196 : GGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGATATT : 1134 168 : yrPheValAspGluGluGluTyrPheLeuHisIlePheCysHisSerIleValAlaTrpGlu : 187 ||||||||||||||! !||||||!:!! !:!!|||.!. !|||.!!! !.!! ! yrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeu 1133 : ACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTG : 1074 188 : IleAlaMetThrGlyIleValAlaHisAspCysMetPheLeuSerCysValGluHisGlyCy : 208 |||!.!:!!..!! ! ! !||| !||| !! !:!:!! ! |||:!!||| !|| IleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCy 1073 : ATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTG : 1011 209 : sSerIlePheAlaValAlaGly : 215 |.!!:!:||||||||||||||| sGlyLeuPheAlaValAlaGly 1010 : CGGACTGTTCGCCGTGGCCGGG : 988 vulgar: CbirOr228 125 215 . LHQN01027734.1 1257 987 - 121 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 988 1257 121 - . gene_id 1 ; sequence CbirOr228 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 988 1257 . - . LHQN01027734.1 exonerate:protein2genome:local exon 988 1257 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 988 1257 121 - . alignment_id 1 ; Query CbirOr228 ; Align 1258 126 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr227 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 148 Query range: 127 -> 215 Target range: 5684 -> 5420 128 : IleTyrCysPheLeuThrThrTyrLeuPheIleLeuMetSerLeuGluProPheIleLeuAs : 148 :!::!! ! ||| !.!! !||||||!!:! !:!! !!!!!! ! !! |||||||| ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAs 5684 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGA : 5624 149 : pIleIleLeuProLeuAsnGluSerArgProIleLeuProProTyrProSerTyrTyrPheV : 169 ||||:!!:!!||||||||||||!!!||| !! ||| ! !||||||:!!|||||||||| pIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheV 5623 : CATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCG : 5561 170 : alAspThrGluGluTyrPhePheGlnIlePheLeuHisThrIleMetValTrpThrPheIle : 189 ||||| !!!::!!||| !!:! !||| ! !|||! ! !:!:||| !..!.!.:!! alAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeu 5560 : TCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTT : 5501 190 : ValIleGlyIleGlnAlaHisAspCysMetPheIleThrTyrValGluHisIleCysSerSe : 210 :!! !! !.!! ||| !|||..!! !:!:!: ! !|||:!!||| !|||.!!! IleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLe 5500 : ATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATT : 5438 211 : rPheAlaValValGly : 215 !!!.|||:!!!.!||| uLeuAlaIleAlaGly 5437 : GTTGGCCATTGCAGGG : 5421 vulgar: CbirOr227 127 215 . LHQN01028732.1 5684 5420 - 148 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5684 148 - . gene_id 1 ; sequence CbirOr227 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5684 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5684 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5684 148 - . alignment_id 1 ; Query CbirOr227 ; Align 5685 128 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr226 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 126 -> 215 Target range: 5687 -> 5420 127 : SerValTyrCysThrLeuSerLeuPheLeuPheLeuSerLeuSerLeuIleProPheAlaLe : 147 !.!|||:!! :!!|||!!! ! !||||||:!!!!!||| !!!!!:!: !! !|| LysValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLe 5687 : AAAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCT : 5627 148 : uAspIleIleLeuProLeuAsnGluSerArgProIleValSerProTyrProAlaAsnTyrP : 168 |||||||:!!:!!||||||||||||!!!||| !! :!!! ! !||||||||| !!|||| uAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrP 5626 : GGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATT : 5564 169 : heValAspValArgGluHisPhePheLysIleTyrTrpHisSerIleLeuAlaTrpGluIle : 188 ||||||||! ! !:!!:!! !!:! !||| !!|||! ! !|||!.! !! !!!: heValAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMet 5563 : TCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATG : 5504 189 : IleIleIleGlyIleIleThrTyrMetCysMetTyrValThrTyrIleGluHisValCysSe : 209 :!!||| !! !.!! !.!!! ! ..!! |||||| ! !:!::!!|||!.!|||.! LeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGl 5503 : CTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGG : 5441 210 : rIlePheAlaThrIleGly : 215 !:!:!!.|||! ! !||| yLeuLeuAlaIleAlaGly 5440 : ATTGTTGGCCATTGCAGGG : 5421 vulgar: CbirOr226 126 215 . LHQN01028732.1 5687 5420 - 131 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5687 131 - . gene_id 1 ; sequence CbirOr226 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5687 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5687 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5687 131 - . alignment_id 1 ; Query CbirOr226 ; Align 5688 127 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 213 Query range: 87 -> 215 Target range: 5892 -> 5420 88 : ArgIleLysTyrLeuThrAspHisLeuLeuAspAspTrpLysLysLeuGluSerProGluGl : 108 !:!:!:||||||||| !! ! :!!! !!!:||||||!:! :!! !||| !!!:|| GlnLeuLysTyrLeuLeuGlyLysIleTyrGluAspTrpArgAlaMetThrSerGluAspGl 5892 : CAGCTGAAATATCTTCTTGGAAAGATCTACGAAGACTGGAGAGCCATGACGTCGGAGGATGA : 5832 109 : uTyrLysIleMetLysAlaTyrAlaAlaAsnGlyArgLeuPheAlaLeuIlePheMet{L} : 128 |||||||||||||! ! !||||||! !!!.|||! !!!! !!.!:!!:!!!:!!!:{|} uTyrLysIleMetThrLysTyrAlaGluLysGlyIlePheSerValIleLeuTyrIle{L}+ 5831 : GTACAAGATCATGACGAAATACGCGGAGAAAGGGATTTTCAGTGTCATACTCTATATT{C}g : 5771 129 : >>>> Target Intron 1 >>>> {eu}TrpCysTyrIleIleSerProValPheVal : 138 88 bp {||} ! :!! !:!! !!:!!|||:!! + ++{eu}HisIleSerLeuCysAlaAlaLeuPheMet 5770 : t.........................ag{TG}CATATATCGTTATGCGCCGCTCTATTTATG : 5654 139 : SerIleSerLeuIleProGlnIleLeuAspLeuIleAlaProLeuAsnGluSerArgProIl : 159 !!!:!: !!!!!:!: !!! !|||||||||:!!:!! !||||||||||||!!!||| !! CysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaAr 5653 : TGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACG : 5591 160 : eLeuLeuProTyrGluAlaTyrTyrPheValAspGluGluGluTyrPhePheTyrIlePheP : 180 |||!!! !||| !|||||||||||||||||||||!!::!!||| !!:!! ||| ! gLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuIleValG 5590 : GTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAG : 5528 181 : heHisAlaValValAlaLeuGluIleAlaIleThrGlyLeuLeuAlaHisAspCysMetLeu : 200 ||| ! !:!!!.!:!!! !!!: !|||:!!! !!!!! !||| !|||..!! ! ! lyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyr 5527 : GGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTAC : 5468 201 : LeuThrTyrValGlnHisValCysSerIlePheAlaIleAlaGly : 215 :!! ! !|||||||||!.!|||.!!:!:!!.|||||||||||| ValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5467 : GTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5421 vulgar: CbirOr229 87 215 . LHQN01028732.1 5892 5420 - 213 M 40 120 S 0 1 5 0 2 I 0 84 3 0 2 S 1 2 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5892 213 - . gene_id 1 ; sequence CbirOr229 ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 5772 5892 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5772 5892 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 5770 5771 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 5684 5771 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 5684 5685 . - . intron_id 0 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 5421 5683 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5683 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5892 213 - . alignment_id 1 ; Query CbirOr229 ; Align 5893 88 120 ; Align 5682 129 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr223 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 154 -> 211 Target range: 5591 -> 5420 155 : ArgProLeuLeuHisArgValGluTyrTyrIleAspMetAspLysTyrTyrPheProIleLe : 175 ||| !!!!:!!:!!! !!.! ! |||!:!:!!||| !||||||||| !!:! !|||:! ArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuIleVa 5591 : CGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGT : 5531 176 : uIleHisGlyTyrLeuThrAlaIleValCysIleSerIleAlaIleAlaThrAspThrMetT : 196 ! ||| !||||||..!!.!:!!:!! !||||||:!! ! !||| !|||.!!! | lGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnT 5530 : AGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATT : 5468 197 : yrValIleMetValGlnHisValCysGlyLeuPheThrIleIleGly : 211 ||||| ! |||||||||!.!|||||||||!!..!!||| !||| yrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5467 : ACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5421 vulgar: CbirOr223 154 211 . LHQN01028732.1 5591 5420 - 123 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5591 123 - . gene_id 1 ; sequence CbirOr223 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5591 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5591 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5591 123 - . alignment_id 1 ; Query CbirOr223 ; Align 5592 155 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr222 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 153 -> 229 Target range: 5600 -> 5372 154 : ThrArgProLeuLeuLeuHisLysValLysTyrTyrTyrIleAspIleAspLysTyrTyrPh : 174 |||||| !!! !|||!!! ! ! ! ||||||!:!:!!||| ||||||||| !!: ThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTy 5600 : ACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTA : 5540 175 : eLeuIleTrpIleHisGlyTyrLeuAlaSerLeuIleCysGlyThrTrpIleIleAlaAlaA : 195 !|||||| ||| !||||||!.! !:!!!!: ! !:!! .!! !|||..!| rLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysA 5539 : CTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCG : 5477 196 : spAlaThrPheMetIlePheValGlnHisAlaCysGlyLeuPheIleValThrThrValArg : 215 |||||!.!!:!:!! ! !|||||||||||||||||||||!!. !:!!.!! ! ! ! spAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***Leu 5476 : ATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTA : 5417 216 : IleGluArgValIleGlnGlnLysGlyCysLeuThrArgAsp : 229 :!!:!! !! !:!!..!:!!!!.|||! !||| !|||:!! ValGlnGlyGlnLeuMetGluAsnGlyPheLeuTyrArgAsn 5416 : GTTCAAGGACAATTAATGGAAAATGGTTTTCTTTATAGAAAT : 5373 vulgar: CbirOr222 153 229 . LHQN01028732.1 5600 5372 - 120 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5373 5600 120 - . gene_id 1 ; sequence CbirOr222 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5373 5600 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5373 5600 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5373 5600 120 - . alignment_id 1 ; Query CbirOr222 ; Align 5601 154 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr224PSE(S) Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 157 Query range: 123 -> 216 Target range: 5699 -> 5420 124 : PheLeuPhePhePheAlaHisCysPheLeuThrMetCysIleIleMetLeuMetSerLeuMe : 144 ||| !||| !.!||| ! ||| ! ..!:!!.!!|||! !:!! !!!!!:! PheThrPheGluLysValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheVa 5699 : TTCACGTTTGAAAAAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGT : 5639 145 : tSerPheIleLeuAspIleValLeuProLeuAsnGluSerArgProValLeuLeuProTyrP : 165 !||| ||||||||||||:!!:!!||||||||||||!!!||| !! !|||!!! !|||| lSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrP 5638 : GTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATC : 5576 166 : roSerTyrTyrPheValAspAlaGluGluTyrValPheGlnIlePheSerHisThrIleVal : 185 ||:!!|||||||||||||||! !!!::!!||| !!:! !||| ! .!!|||! ! !:!! roAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeu 5575 : CAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTT : 5516 186 : AlaTrpPhePheLeuGlyIleGlyIleMetAlaHisAspGlyMetPheIleThrTyrIleGl : 206 !.! ! ! .!.||| ! !! !.!! ||| !|||!.!! !:!:!: ! !:!::! ValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGl 5515 : GTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCA : 5453 207 : uHisIleCysSerSerPheAlaValIleGly : 216 !||| !|||.!!! !!!.|||:!! !||| nHisAlaCysGlyLeuLeuAlaIleAlaGly 5452 : ACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5421 vulgar: CbirOr224PSE(S) 123 216 . LHQN01028732.1 5699 5420 - 157 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5699 157 - . gene_id 1 ; sequence CbirOr224PSE(S) ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5699 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5699 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5699 157 - . alignment_id 1 ; Query CbirOr224PSE(S) ; Align 5700 124 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr228 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 166 Query range: 132 -> 215 Target range: 5669 -> 5420 133 : CysLeuAlaLeuPheMetCysAlaSerLeuIleProGlnLeuLeuAsnValValLeuProLe : 153 ||| !||||||||||||||| ! !!!!!:!: !!! !:!!|||:!!:!!:!!:!!||||| CysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLe 5669 : TGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTT : 5609 154 : uAsnGluSerArgProValLeuProProTyrProGlyHisTyrPheValAspGluGluGluT : 174 |||||||!!!||| !! !||| ! !||||||!.!:!!|||||||||||||||!!::!!| uAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysT 5608 : GAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAAT : 5546 175 : yrPheLeuHisIlePheCysHisSerIleValAlaTrpGluIleAlaMetThrGlyIleVal : 194 || !! ! ||| ! ! |||! ! !:!!!.! !! !!!: !!!::!!! !.!! ! yrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCys 5545 : ATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGC : 5486 195 : AlaHisAspCysMetPheLeuSerCysValGluHisGlyCysSerIlePheAlaValAlaGl : 215 ||| !|||..!! !:!:!!! !..!|||:!!|||!.!|||.!!:!:!!.|||:!!||||| AlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGl 5485 : GCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGG : 5423 216 : y : 215 | y 5422 : G : 5421 vulgar: CbirOr228 132 215 . LHQN01028732.1 5669 5420 - 166 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5669 166 - . gene_id 1 ; sequence CbirOr228 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5669 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5669 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5669 166 - . alignment_id 1 ; Query CbirOr228 ; Align 5670 133 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr229 Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 124 -> 215 Target range: 436 -> 709 125 : IlePheMetLeuTrpCysTyrIleIleSerProValPheValSerIleSerLeuIleProGlnI : 146 |||.!! :!!!::! !:!:!::!! !! !! !||||||! !:!:..!:!!:!!||||||| IleIleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuProGlnI 437 : ATTATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAA : 500 147 : leLeuAspLeuIleAlaProLeuAsnGluSerArgProIleLeuLeuProTyrGluAlaTyrTy : 167 |||||! !:!!|||:!!||||||!.!|||! !!.! !!! ! !|||! ! !..!.!! ! || leLeuGlyIleIleSerProLeuThrGluIleAsnThrAsnLysLeuLeuValArgThrGluTy 501 : TTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAACAAATTACTCGTTCGAACCGAATA : 563 168 : rPheValAspGluGluGluTyrPhePheTyrIlePhePheHisAlaValValAlaLeuGluIle : 188 |||||||||| ! :!!!!:|||.!!!:! ||| .!!||||||..!:!!|||:!! ! ! rPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAlaThrIleAlaIleMetCys 564 : CTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCGACTATAGCAATAATGTGT : 626 189 : AlaIleThrGlyLeuLeuAlaHisAspCysMetLeuLeuThrTyrValGlnHisValCysSerI : 210 ::!:!:||| !! !:!!::! !||| ::: :::::!..!|||:!! !!.!!! SerValThrMetGlnIleSerSerAspIleLeuAsnAsnIlePheMetMetHisIleSerGlyM 627 : AGTGTGACTATGCAAATTAGCAGCGATAttttgaataacatatttatGATGCACATCAGTGGAA : 692 211 : lePheAlaIleAlaGly : 215 !:|||! !:!! !||| etPheGluValIleGly 693 : TGTTCGAGGTAATTGGG : 709 vulgar: CbirOr229 124 215 . LHQN01050134.1 436 709 + 135 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 437 709 135 + . gene_id 1 ; sequence CbirOr229 ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 437 709 . + . LHQN01050134.1 exonerate:protein2genome:local exon 437 709 . + . insertions 0 ; deletions 0 LHQN01050134.1 exonerate:protein2genome:local similarity 437 709 135 + . alignment_id 1 ; Query CbirOr229 ; Align 437 125 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr256INT Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 250 -> 311 Target range: 358633 -> 358819 251 : ArgArgThrMetGluTyrAsnThrLeuTrpTyrValAlaProLeuProIleLysLys< : 270 ||| ! ! ..!|||!:!:!! !||||||..!||| !!:!!||| !:!!||| ArgSerLeuTyrArgTyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysT 358634 : CGTTCACTTTATAGGTACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAA : 358691 271 : ->LeuPheLeuIleMetGlnLysSerIleLysSerHisLysLeuValIleGlyGlyLe : 288 |||!!.! !||||||||| ! ||||||:!!..!:!!!!.!!! !||||||||||| hrLeuLeuTyrIleMetGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLe 358692 : CACTGTTATACATCATGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCT : 358748 289 : uPheValProSerMetGluGlyPheThrThrLeuValThrThrAlaIleSerTyrPhe : 307 ||||||||||||| :!!||||||:!!|||:!!..! !:!! !! !||| uPheValProSerTyrGlnGlyPheSerThrValThrAspSerIleAsnSer***Asn 358749 : GTTTGTGCCGAGTTACCAAGGATTTTCTACGGTAACAGATTCTATCAATagttaaaat : 358805 308 : SerValMetTyr : 311 |||::::::::: SerLeuIlePhe 358806 : tcattaattttt : 358819 vulgar: CbirOr256INT 250 311 . KQ414693.1 358633 358819 + 111 M 19 57 G 0 3 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358634 358819 111 + . gene_id 1 ; sequence CbirOr256INT ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 358634 358819 . + . KQ414693.1 exonerate:protein2genome:local exon 358634 358819 . + . insertions 3 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358634 358819 111 + . alignment_id 1 ; Query CbirOr256INT ; Align 358634 251 57 ; Align 358694 270 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr253 Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 333 -> 380 Target range: 358648 -> 358792 334 : TyrAsnThrLeuTrpTyrValAlaProLeuProIleGlnArg<->LeuPheLeuIleM : 352 |||!:!:!! !||||||..!||| !!:!!||| !|||!:! |||!!.! !|||| TyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuLeuTyrIleM 358649 : TACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGTTATACATCA : 358706 353 : etGlnLysSerIleLysSerHisLysMetValLeuGlyGlyLeuPheValAlaSerIl : 371 ||||| ! ||||||:!!..!:!!!!..!. !:!!||||||||||||||| !!||| etGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheValProSerTy 358707 : TGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGTGCCGAGTTA : 358763 372 : eGluGlyPheSerThrLeuIleThrSer : 380 !:!!||||||||||||:!!! ! !||| rGlnGlyPheSerThrValThrAspSer 358764 : CCAAGGATTTTCTACGGTAACAGATTCT : 358792 vulgar: CbirOr253 333 380 . KQ414693.1 358648 358792 + 103 M 14 42 G 0 3 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358649 358792 103 + . gene_id 1 ; sequence CbirOr253 ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 358649 358792 . + . KQ414693.1 exonerate:protein2genome:local exon 358649 358792 . + . insertions 3 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358649 358792 103 + . alignment_id 1 ; Query CbirOr253 ; Align 358649 334 42 ; Align 358694 348 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr257NI Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 281 -> 331 Target range: 358639 -> 358792 282 : LeuPheArgTyrAspThrLeuTrpTyrValAlaProLeuProIleGlnLys<->LeuP : 300 |||!:!||||||..!:!! !||||||..!||| !!:!!||| !|||||| |||! LeuTyrArgTyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuL 358640 : CTTTATAGGTACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGT : 358697 301 : heLeuIleMetGlnLysSerIleGlnAlaHisThrLeuLysIleGlyGlyLeuPheTh : 319 !.! !||||||||| ! |||||||||! !:!!!.!!!!..!|||||||||||||||.. euTyrIleMetGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheVa 358698 : TATACATCATGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGT : 358754 320 : rValSerValGluGlyPheSerThrIleLeuThrSer : 331 ! !||| !:!!||||||||||||:!! ! !||| lProSerTyrGlnGlyPheSerThrValThrAspSer 358755 : GCCGAGTTACCAAGGATTTTCTACGGTAACAGATTCT : 358792 vulgar: CbirOr257NI 281 331 . KQ414693.1 358639 358792 + 120 M 17 51 G 0 3 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358640 358792 120 + . gene_id 1 ; sequence CbirOr257NI ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 358640 358792 . + . KQ414693.1 exonerate:protein2genome:local exon 358640 358792 . + . insertions 3 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358640 358792 120 + . alignment_id 1 ; Query CbirOr257NI ; Align 358640 282 51 ; Align 358694 299 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr241PSE(F) Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 334 -> 381 Target range: 358648 -> 358792 335 : TyrAsnThrLeuTrpTyrValAlaProLeuProIleGlnLys<->LeuPheLeuIleM : 353 |||!:!:!! !||||||..!||| !!:!!||| !|||||| |||!!.! !|||| TyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuLeuTyrIleM 358649 : TACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGTTATACATCA : 358706 354 : etGlnLysSerIleLysSerHisLysValValValGlyGlyLeuPheValAlaSerIl : 372 ||||| ! ||||||:!!..!:!!!!. !! !:!!||||||||||||||| !!||| etGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheValProSerTy 358707 : TGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGTGCCGAGTTA : 358763 373 : eGluGlyPheSerThrLeuValThrSer : 381 !:!!||||||||||||:!!..! !||| rGlnGlyPheSerThrValThrAspSer 358764 : CCAAGGATTTTCTACGGTAACAGATTCT : 358792 vulgar: CbirOr241PSE(F) 334 381 . KQ414693.1 358648 358792 + 107 M 14 42 G 0 3 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358649 358792 107 + . gene_id 1 ; sequence CbirOr241PSE(F) ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 358649 358792 . + . KQ414693.1 exonerate:protein2genome:local exon 358649 358792 . + . insertions 3 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358649 358792 107 + . alignment_id 1 ; Query CbirOr241PSE(F) ; Align 358649 335 42 ; Align 358694 349 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr240PI Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 193 -> 243 Target range: 358639 -> 358792 194 : LeuValTrpTyrAsnThrLeuTrpTyrValAlaProLeuProIleGlnLys<->LeuP : 212 ||| ! !!|||!:!:!! !||||||..!||| !!:!!||| !|||||| |||! LeuTyrArgTyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuL 358640 : CTTTATAGGTACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGT : 358697 213 : heLeuIleMetGlnLysSerIleLysSerHisLysValValValGlyGlyLeuPheVa : 231 !.! !||||||||| ! ||||||:!!..!:!!!!. !! !:!!|||||||||||||| euTyrIleMetGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheVa 358698 : TATACATCATGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGT : 358754 232 : lAlaSerIleGluGlyPheSerThrLeuValThrSer : 243 | !!||| !:!!||||||||||||:!!..! !||| lProSerTyrGlnGlyPheSerThrValThrAspSer 358755 : GCCGAGTTACCAAGGATTTTCTACGGTAACAGATTCT : 358792 vulgar: CbirOr240PI 193 243 . KQ414693.1 358639 358792 + 107 M 17 51 G 0 3 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358640 358792 107 + . gene_id 1 ; sequence CbirOr240PI ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 358640 358792 . + . KQ414693.1 exonerate:protein2genome:local exon 358640 358792 . + . insertions 3 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358640 358792 107 + . alignment_id 1 ; Query CbirOr240PI ; Align 358640 194 51 ; Align 358694 211 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 153 Query range: 129 -> 215 Target range: 14151 -> 13893 130 : CysPheIleSerTyrAlaLeuPheMetCysIleSerIleIleProGlnMetLeuAsnVal : 149 ....!!:!!!!! ! !||||||:!! !! !!:!:! !|||!!.!!:|||:!!:!! AlaIleValCysValIleLeuPheValThrThrProValThrProHisIleLeuAspIle 14151 : GCGATCGTTTGTGTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATTTTGGACATT : 14094 150 : IleLeuProLeuAsnGluSerArgProValValValProTyrProGlyTyrTyrPheVal : 169 :!!|||||| !|||||||||||| !|||!.! ! !||||||!.!|||||||||..! LeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThr 14093 : TTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACC : 14034 170 : AspGluGluGluTyrPheLeuTyrIlePheCysHisAlaValValSerGlyGluIleMet : 189 ||||||.!.:!!||| !:!!||||||.!! ||| !!.! ! ! ! :!::!! AspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValVal 14033 : GACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTG : 13974 190 : MetThrGlyIleValAlaHisAspCysMetLeuLeuThrCysIleGluHisIleCysSer : 209 .!. !! ! !|||||| !||| !! ! !:!! ! !:!::!!||| !|||.!! PheTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGly 13973 : TTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGA : 13914 210 : IlePheAlaValAlaGly : 215 :!:!!.||||||:!!||| LeuLeuAlaValSerGly 13913 : TTGTTGGCCGTGTCCGGg : 13894 vulgar: CbirOr230 129 215 . KQ414772.1 14151 13893 - 153 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13894 14151 153 - . gene_id 1 ; sequence CbirOr230 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13894 14151 . - . KQ414772.1 exonerate:protein2genome:local exon 13894 14151 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13894 14151 153 - . alignment_id 1 ; Query CbirOr230 ; Align 14152 130 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 147 Query range: 292 -> 386 Target range: 17295 -> 16528 293 : LeuAspAlaLeuLysTyrValValTyrPheAlaAlaGlnLeuIleHisLeuPheTyrLeu : 312 :!!||| !! !!:!||| ! !!:! !..!||||||!!:||||||||| !:!! IleAspPheTyrArgTyrCysSerPheThrLeuCysGlnLeuMetHisLeuPheValIle 17295 : ATAGACTTCTACAGATATTGCAGTTTTACGTTGTGTCAACTGATGCACCTGTTCGTTATC : 17238 313 : SerPheGluGlyGlnLysLeuIleAspHisSerValGlnMetArgGluLys{Il} >>> : 330 ! !.!!:!!|||||| :!!:!:||| !!!! !::!!!:!.!||| !{||} MetLeuGlnGlyGlnPheValLeuAspSerCysGluArgIleHisGluAla{Il}++ 17237 : ATGCTTCAGGGACAGTTCGTGCTGGATTCGTGCGAGAGAATTCACGAGGCG{AT}gt... : 17180 331 : > Target Intron 1 >>>> {e}TyrAspSerLeuTrpTyrLysThrProValLys : 341 402 bp {|}|||!!:||||||||||||! !!:! !! !||| ++{e}TyrGluSerLeuTrpTyrThrSerSerSerLys 17179 : ......................ag{A}TACGAATCATTATGGTACACAAGTTCTTCGAAA : 16749 342 : SerLysAsnValLeuLeuPheValIleArgArgThrTyrGlnProIlePheLeuThrAla : 361 !!!:!! :!!! !:!! ! !.!:!!||||||!.! !|||! !! !||||||||| ThrGlnAlaLeuTyrValValAlaLeuArgArgAsnLeuThrProThrCysLeuThrAla 16748 : ACACAAGCATTATACGTGGTAGCGTTACGAAGAAACCTAACACCTACCTGTTTAACGGCT : 16689 362 : GlyLysIleLeuValPheSerLeuGluSerPheThrThr >>>> Target Intron : 375 ||| :!!:!! !.!.!:!:!!:!!||||||.!! ! 83 bp GlyGlyLeuValGlnLeuAsnMetGlnSerPheAlaGlu++ 16688 : GGCGGTTTAGTGCAACTGAACATGCAAAGCTTCGCAGAGgt................... : 16645 376 : 2 >>>> IleLeuGlnThrSerMetSerTyrPheThrValLeu : 386 :!::!!:!!! !|||:!:||||||!:!||||||||| ++ValValLysMetSerValSerTyrTyrThrValLeu 16644 : ......agGTGGTAAAAATGTCCGTTTCCTATTATACGGTGTTG : 16529 vulgar: CbirOr230 292 386 . KQ414772.1 17295 16528 - 147 M 37 111 S 0 2 5 0 2 I 0 398 3 0 2 S 1 1 M 44 132 5 0 2 I 0 79 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 16529 17295 147 - . gene_id 2 ; sequence CbirOr230 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 17183 17295 . - . KQ414772.1 exonerate:protein2genome:local exon 17183 17295 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 17181 17182 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 16781 17182 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 16781 16782 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 16648 16780 . - . KQ414772.1 exonerate:protein2genome:local exon 16648 16780 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 16646 16647 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 16565 16647 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 16565 16566 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 16529 16564 . - . KQ414772.1 exonerate:protein2genome:local exon 16529 16564 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 16529 17295 147 - . alignment_id 2 ; Query CbirOr230 ; Align 17296 293 111 ; Align 16780 331 132 ; Align 16565 375 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 129 -> 215 Target range: 18060 -> 17802 130 : CysPheIleSerTyrAlaLeuPheMetCysIleSerIleIleProGlnMetLeuAsnVal : 149 ...!:!|||!!!! !||||||!!: :!: !! !!!:!:!!:!!||| ! AlaTyrIleCysSerPheLeuPheIleGlnValProTrpSerThrArgLeuValAsnSer 18060 : GCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCG : 18003 150 : IleLeuProLeuAsnGluSerArgProValValValProTyrProGlyTyrTyrPheVal : 169 ! ! !!! !||| !!!!! ! !:!! ! !! ! |||||||||||||||||| TyrLysThrGlnAsnIleThrProSerLeuGlnPheValIleProGlyTyrTyrPheVal 18002 : TACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTC : 17943 170 : AspGluGluGluTyrPheLeuTyrIlePheCysHisAlaValValSerGlyGluIleMet : 189 ||||||! !||||||!:!! !||||||.!. !|||!.!..! !!!! ! !|||:!: AspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIleLeuIleVal 17942 : GACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATTTTGATTGTA : 17883 190 : MetThrGlyIleValAlaHisAspCysMetLeuLeuThrCysIleGluHisIleCysSer : 209 :!!..!! ! ! !||| !||| !! ! !:!!..! :!::!!|||! !|||.!! ValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGly 17882 : GTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGA : 17823 210 : IlePheAlaValAlaGly : 215 :!:||||||||||||||| LeuPheAlaValAlaGly 17822 : CTGTTCGCCGTGGCCGGG : 17803 vulgar: CbirOr230 129 215 . KQ414772.1 18060 17802 - 128 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17803 18060 128 - . gene_id 3 ; sequence CbirOr230 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17803 18060 . - . KQ414772.1 exonerate:protein2genome:local exon 17803 18060 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17803 18060 128 - . alignment_id 3 ; Query CbirOr230 ; Align 18061 130 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 121 -> 178 Target range: 45985 -> 45814 122 : PheSerLeuGlyTyrSerSerTyrCysPheIleSerTyrAlaLeuPheMetCysIleSer : 141 !!.|||:!! ! !||| ! ! !:!|||.!! :!!:!!||| ! !! LeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThrAlaPro 45985 : TTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCC : 45928 142 : IleIleProGlnMetLeuAsnValIleLeuProLeuAsnGluSerArgProValValVal : 161 :!!|||||| !!:|||:!!:!!|||! !||||||||||||||||||||| !:!! ! LeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArgLeuTyr 45927 : CTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTAC : 45868 162 : ProTyrProGlyTyrTyrPheValAspGluGluGluTyrPheLeuTyrIle : 178 !!||| !!.!|||! !!:! !!:!! !!!:!!:|||!:!! !|||:!! AlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrVal 45867 : GCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTC : 45815 vulgar: CbirOr230 121 178 . KQ414772.1 45985 45814 - 100 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45815 45985 100 - . gene_id 4 ; sequence CbirOr230 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45815 45985 . - . KQ414772.1 exonerate:protein2genome:local exon 45815 45985 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45815 45985 100 - . alignment_id 4 ; Query CbirOr230 ; Align 45986 122 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr247 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 84 -> 179 Target range: 46096 -> 45811 85 : AsnSerGluMetIleLysHisAlaLeuGluHisValGlnLeuAspTrpLysMetPheGlu : 104 ||| |||||| :::|||! !..!||| !!:::::! !!.... AsnValThrGluIleLysLysArgLysGlnHisAspSerLeuArgTyrArgLysLeuSer 46096 : AATGtgacagaaataaaaaaaagaaaacagcacGATTCGTTACGTTACCGTAAATTATCC : 46039 105 : AsnSerAspAlaIleLysIleLeuGluAspTyrLeuHisAspSerTyrIleLeuAlaLeu : 124 !|||... !||| .!!:!!.!.||| ! ! !||| ! !! !:!!|||:!!:!! PheSerSerIleIleLeuPheIleAsnAspLysGlnHis***IleSerValLeuSerIle 46038 : TTCTCGTCGATAATACTTTTTATCAACGACAAGCAACATTGAATTTCCGTTTTATCGATA : 45979 125 : CysAlaCysAlaPheLeuPheThrGlyMetPheThrPheLeuThrValGluCysGlyPro : 144 !|||! !.! !:!!!:!! !|||:!!! !..!|||! !|||!.! ! !||| HisAlaSerValThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIlePro 45978 : CATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCG : 45919 145 : ValIlePheAspValIleIleProIleAsnGluThrArgProArgThrValGluIleAsp : 164 !!|||.!.|||:!!||| !|||:!:||||||:!!||||||||| ! !! ! ! PheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLys 45918 : TTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAA : 45859 165 : LeuGluThrPheIleAspLysAspLysTyrPhePheValTyrIle : 179 ! ! !!:!.!!:!! !||| ! |||!:!!:! ! !:!: AlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValVal 45858 : GCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTG : 45812 vulgar: CbirOr247 84 179 . KQ414772.1 46096 45811 - 114 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45812 46096 114 - . gene_id 1 ; sequence CbirOr247 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45812 46096 . - . KQ414772.1 exonerate:protein2genome:local exon 45812 46096 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45812 46096 114 - . alignment_id 1 ; Query CbirOr247 ; Align 46097 85 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr252 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 129 -> 181 Target range: 20577 -> 20421 130 : LeuValValAlaAlaIleIlePheValIlePheGluCysSerProIleIleLeuAspVal : 149 ||| !!:!! !!||| !||||||:!! ! ! ! !:!!|||||||||||||||:!! LeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAspIle 20577 : TTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATT : 20520 150 : IleAlaProMetAsnLysSerArgLeuArgLysValGluValAspPheGluLeuPheVal : 169 !||||||:!!||||||!!!||| !||| ! !!! ! ! ! ! !!:::!! TyrAlaProLeuAsnLysThrArgLysArgValPheValTyrProAlaTyrTyrTrpMet 20519 : TACGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATG : 20460 170 : AspGlnGluGlnTyrPheValLeuTyrLeuValHis : 181 |||! |||||||||!:!:!!:!! :!!:!!||| AspProGluGlnTyrTyrMetIleMetIleIleHis 20459 : GATCCTGAGCAATACTACATGATAATGATAATACAC : 20422 vulgar: CbirOr252 129 181 . KQ414772.1 20577 20421 - 103 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20422 20577 103 - . gene_id 1 ; sequence CbirOr252 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20422 20577 . - . KQ414772.1 exonerate:protein2genome:local exon 20422 20577 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20422 20577 103 - . alignment_id 1 ; Query CbirOr252 ; Align 20578 130 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 322 -> 372 Target range: 1345564 -> 1345714 323 : SerValGlnMetArgGluLysIleTyrAspSerLeuTrpTyrLysThrProValLy : 341 ||| !:!!|||!:!:!! !||| !||| !|||||| ! !|||! !|| SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 342 : sSerLysAsnValLeuLeuPheValIleArgArgThrTyrGlnProIlePheLeuT : 360 |! !! !... !|||:!!||| !||| !|||:!! ! :!!||| !:!|||| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 361 : hrAlaGlyLysIleLeuValPheSerLeuGluSerPhe : 372 |||||||||||.!!! !|||||||||||||||!!!||| hrAlaGlyLysPheTyrValPheSerLeuGluThrPhe 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTC : 1345714 vulgar: CbirOr230 322 372 . KQ414782.1 1345564 1345714 + 116 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345714 116 + . gene_id 1 ; sequence CbirOr230 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345714 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345714 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345714 116 + . alignment_id 1 ; Query CbirOr230 ; Align 1345565 323 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr247 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 84 -> 179 Target range: 33843 -> 33558 85 : AsnSerGluMetIleLysHisAlaLeuGluHisValGlnLeuAspTrpLysMetPheGlu : 104 ||| |||||| :::|||! !..!||| !!:::::! !!.... AsnValThrGluIleLysLysArgLysGlnHisAspSerLeuArgTyrArgLysLeuSer 33843 : AATGtgacagaaataaaaaaaagaaaacagcacGATTCGTTACGTTACCGTAAATTATCC : 33786 105 : AsnSerAspAlaIleLysIleLeuGluAspTyrLeuHisAspSerTyrIleLeuAlaLeu : 124 !|||... !||| .!!:!!.!.||| ! ! !||| ! !! !:!!|||:!!:!! PheSerSerIleIleLeuPheIleAsnAspLysGlnHis***IleSerValLeuSerIle 33785 : TTCTCGTCGATAATACTTTTTATCAACGACAAGCAACATTGAATTTCCGTTTTATCGATA : 33726 125 : CysAlaCysAlaPheLeuPheThrGlyMetPheThrPheLeuThrValGluCysGlyPro : 144 !|||! !.! !:!!!:!! !|||:!!! !..!|||! !|||!.! ! !||| HisAlaSerValThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIlePro 33725 : CATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCG : 33666 145 : ValIlePheAspValIleIleProIleAsnGluThrArgProArgThrValGluIleAsp : 164 !!|||.!.|||:!!||| !|||:!:||||||:!!||||||||| ! !! ! ! PheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLys 33665 : TTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAA : 33606 165 : LeuGluThrPheIleAspLysAspLysTyrPhePheValTyrIle : 179 ! ! !!:!.!!:!! !||| ! |||!:!!:! ! !:!: AlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValVal 33605 : GCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTG : 33559 vulgar: CbirOr247 84 179 . LHQN01017803.1 33843 33558 - 114 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33559 33843 114 - . gene_id 1 ; sequence CbirOr247 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33559 33843 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33559 33843 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33559 33843 114 - . alignment_id 1 ; Query CbirOr247 ; Align 33844 85 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 165 Query range: 134 -> 215 Target range: 26231 -> 25988 135 : AlaLeuPheMetCysIleSerIleIleProGlnMetLeuAsnValIleLeuProLeuAsn : 154 |||||||||||||||:!: !!.!!:!: !!! !!!:|||:!!:!!:!!:!!||||||||| AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsn 26231 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAAC : 26174 155 : GluSerArgProValValValProTyrProGlyTyrTyrPheValAspGluGluGluTyr : 174 |||!!!||| !! !:!! !! !||||||!.!||||||||||||||||||!!::!!||| GluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyr 26173 : GAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATAT : 26114 175 : PheLeuTyrIlePheCysHisAlaValValSerGlyGluIleMetMetThrGlyIleVal : 194 !! !! ||| ! ! ||| ! !:!! !! !! !!!::!:!!::!!! !.!! ! HisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCys 26113 : CATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGC : 26054 195 : AlaHisAspCysMetLeuLeuThrCysIleGluHisIleCysSerIlePheAlaValAla : 214 ||| !|||..!! ! !:!! !..!:!::!!||| !|||.!!:!:!!.|||:!!||| AlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla 26053 : GCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCA : 25994 215 : Gly : 215 ||| Gly 25993 : GGG : 25989 vulgar: CbirOr230 134 215 . LHQN01017803.1 26231 25988 - 165 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26231 165 - . gene_id 1 ; sequence CbirOr230 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26231 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26231 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26231 165 - . alignment_id 1 ; Query CbirOr230 ; Align 26232 135 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 153 Query range: 129 -> 215 Target range: 14188 -> 13930 130 : CysPheIleSerTyrAlaLeuPheMetCysIleSerIleIleProGlnMetLeuAsnVal : 149 ....!!:!!!!! ! !||||||:!!! ! !!:!:! !|||!!.!!:|||:!!:!! AlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIle 14188 : GCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATT : 14131 150 : IleLeuProLeuAsnGluSerArgProValValValProTyrProGlyTyrTyrPheVal : 169 :!!|||||| !|||||||||||| !|||!.! ! !||||||!.!|||||||||..! LeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThr 14130 : TTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTATCCGGCCTATTATTTCACC : 14071 170 : AspGluGluGluTyrPheLeuTyrIlePheCysHisAlaValValSerGlyGluIleMet : 189 ||||||.!.:!!||| !:!!||||||.!! ||| !!.! ! ! ! :!::!! AspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValVal 14070 : GACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTG : 14011 190 : MetThrGlyIleValAlaHisAspCysMetLeuLeuThrCysIleGluHisIleCysSer : 209 .!. !! ! !|||||| !||| !! ! !:!! ! !:!::!!||| !|||.!! PheTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGly 14010 : TTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGA : 13951 210 : IlePheAlaValAlaGly : 215 :!:!!.||||||:!!||| LeuLeuAlaValSerGly 13950 : TTGTTGGCCGTGTCCGGg : 13931 vulgar: CbirOr230 129 215 . LHQN01017803.1 14188 13930 - 153 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13931 14188 153 - . gene_id 2 ; sequence CbirOr230 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13931 14188 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13931 14188 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13931 14188 153 - . alignment_id 2 ; Query CbirOr230 ; Align 14189 130 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 147 Query range: 292 -> 386 Target range: 17679 -> 16912 293 : LeuAspAlaLeuLysTyrValValTyrPheAlaAlaGlnLeuIleHisLeuPheTyrLeu : 312 :!!||| !! !!:!||| ! !!:! !..!||||||!!:||||||||| !:!! IleAspPheTyrArgTyrCysSerPheThrLeuCysGlnLeuMetHisLeuPheValIle 17679 : ATAGACTTCTACAGATATTGCAGTTTTACGTTGTGTCAACTGATGCACCTGTTCGTTATC : 17622 313 : SerPheGluGlyGlnLysLeuIleAspHisSerValGlnMetArgGluLys{Il} >>> : 330 ! !.!!:!!|||||| :!!:!:||| !!!! !::!!!:!.!||| !{||} MetLeuGlnGlyGlnPheValLeuAspSerCysGluArgIleHisGluAla{Il}++ 17621 : ATGCTTCAGGGACAGTTCGTGCTGGATTCGTGCGAGAGAATTCACGAGGCG{AT}gt... : 17564 331 : > Target Intron 1 >>>> {e}TyrAspSerLeuTrpTyrLysThrProValLys : 341 402 bp {|}|||!!:||||||||||||! !!:! !! !||| ++{e}TyrGluSerLeuTrpTyrThrSerSerSerLys 17563 : ......................ag{A}TACGAATCATTATGGTACACAAGTTCTTCGAAA : 17133 342 : SerLysAsnValLeuLeuPheValIleArgArgThrTyrGlnProIlePheLeuThrAla : 361 !!!:!! :!!! !:!! ! !.!:!!||||||!.! !|||! !! !||||||||| ThrGlnAlaLeuTyrValValAlaLeuArgArgAsnLeuThrProThrCysLeuThrAla 17132 : ACACAAGCATTATACGTGGTAGCGTTACGAAGAAACCTAACACCTACCTGTTTAACGGCT : 17073 362 : GlyLysIleLeuValPheSerLeuGluSerPheThrThr >>>> Target Intron : 375 ||| :!!:!! !.!.!:!:!!:!!||||||.!! ! 83 bp GlyGlyLeuValGlnLeuAsnMetGlnSerPheAlaGlu++ 17072 : GGCGGTTTAGTGCAACTGAACATGCAAAGCTTCGCAGAGgt................... : 17029 376 : 2 >>>> IleLeuGlnThrSerMetSerTyrPheThrValLeu : 386 :!::!!:!!! !|||:!:||||||!:!||||||||| ++ValValLysMetSerValSerTyrTyrThrValLeu 17028 : ......agGTGGTAAAAATGTCCGTTTCCTATTATACGGTGTTG : 16913 vulgar: CbirOr230 292 386 . LHQN01017803.1 17679 16912 - 147 M 37 111 S 0 2 5 0 2 I 0 398 3 0 2 S 1 1 M 44 132 5 0 2 I 0 79 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 16913 17679 147 - . gene_id 3 ; sequence CbirOr230 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 17567 17679 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17567 17679 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 17565 17566 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 17165 17566 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 17165 17166 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 17032 17164 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17032 17164 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 17030 17031 . - . intron_id 2 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 16949 17031 . - . intron_id 2 LHQN01017803.1 exonerate:protein2genome:local splice3 16949 16950 . - . intron_id 1 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 16913 16948 . - . LHQN01017803.1 exonerate:protein2genome:local exon 16913 16948 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 16913 17679 147 - . alignment_id 3 ; Query CbirOr230 ; Align 17680 293 111 ; Align 17164 331 132 ; Align 16949 375 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 133 Query range: 129 -> 215 Target range: 18444 -> 18186 130 : CysPheIleSerTyrAlaLeuPheMetCysIleSerIleIleProGlnMetLeuAsnVal : 149 ...!:!|||!!!! !||||||!!: :!: !! !!!:!:!!:!!||| ! AlaTyrIleCysSerPheLeuPheIleGlnValProTrpSerThrArgLeuValAsnSer 18444 : GCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCG : 18387 150 : IleLeuProLeuAsnGluSerArgProValValValProTyrProGlyTyrTyrPheVal : 169 ! ! !!! !||| !!!!! ! !:!! !||| ! |||||||||||||||||| TyrLysThrGlnAsnIleThrProSerLeuProValValValProGlyTyrTyrPheVal 18386 : TACAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTC : 18327 170 : AspGluGluGluTyrPheLeuTyrIlePheCysHisAlaValValSerGlyGluIleMet : 189 ||||||! !||||||!:!! !||||||.!. !|||!.!..! !!!! ! !|||:!: AspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIleLeuIleVal 18326 : GACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATTTTGATTGTA : 18267 190 : MetThrGlyIleValAlaHisAspCysMetLeuLeuThrCysIleGluHisIleCysSer : 209 :!!..!! ! ! !||| !||| !! ! !:!!..! :!::!!|||! !|||.!! ValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGly 18266 : GTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGA : 18207 210 : IlePheAlaValAlaGly : 215 :!:||||||||||||||| LeuPheAlaValAlaGly 18206 : CTGTTCGCCGTGGCCGGG : 18187 vulgar: CbirOr230 129 215 . LHQN01017803.1 18444 18186 - 133 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18187 18444 133 - . gene_id 4 ; sequence CbirOr230 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18187 18444 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18187 18444 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18187 18444 133 - . alignment_id 4 ; Query CbirOr230 ; Align 18445 130 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 121 -> 178 Target range: 33732 -> 33561 122 : PheSerLeuGlyTyrSerSerTyrCysPheIleSerTyrAlaLeuPheMetCysIleSer : 141 !!.|||:!! ! !||| ! ! !:!|||.!! :!!:!!||| ! !! LeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThrAlaPro 33732 : TTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCC : 33675 142 : IleIleProGlnMetLeuAsnValIleLeuProLeuAsnGluSerArgProValValVal : 161 :!!|||||| !!:|||:!!:!!|||! !||||||||||||||||||||| !:!! ! LeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArgLeuTyr 33674 : CTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTAC : 33615 162 : ProTyrProGlyTyrTyrPheValAspGluGluGluTyrPheLeuTyrIle : 178 !!||| !!.!|||! !!:! !!:!! !!!:!!:|||!:!! !|||:!! AlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrVal 33614 : GCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTC : 33562 vulgar: CbirOr230 121 178 . LHQN01017803.1 33732 33561 - 100 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33562 33732 100 - . gene_id 5 ; sequence CbirOr230 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33562 33732 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33562 33732 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33562 33732 100 - . alignment_id 5 ; Query CbirOr230 ; Align 33733 122 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 319 -> 375 Target range: 34375 -> 34543 320 : IleAspHisSerValGlnMetArgGluLysIleTyrAspSerLeuTrpTyrLysThrPro : 339 ||| !!!.||| !:!!|||!!!.!.... !|||!!:||| !||||||!!...! !! IlePheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSer 34376 : ATATTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCA : 34433 340 : ValLysSerLysAsnValLeuLeuPheValIleArgArgThrTyrGlnProIlePheLeu : 359 ! !..! !!. !|||||||||:!!!!:!.!|||||| !!::|||:!!! !||| ProProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeu 34434 : CCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTG : 34493 360 : ThrAlaGlyLysIleLeuValPheSerLeuGluSerPheThrThrIle : 375 ||||||||||||.!! !..!||||||:!!|||! !|||!:!|||:!! ThrAlaGlyLysPheSerThrPheSerMetGluMetPheSerThrVal 34494 : ACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTGTA : 34543 vulgar: CbirOr230 319 375 . KQ414804.1 34375 34543 + 116 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34376 34543 116 + . gene_id 1 ; sequence CbirOr230 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 34376 34543 . + . KQ414804.1 exonerate:protein2genome:local exon 34376 34543 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34376 34543 116 + . alignment_id 1 ; Query CbirOr230 ; Align 34376 320 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr237PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 141 -> 210 Target range: 485722 -> 485929 142 : IleLeuAspValIleIleProMetAsnGluSerArgProArgLysValGluIleAspL : 161 |||||||||:!!:!:||||||:!!||| ! !!!|||||||||! !:!! |||:!!! IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 162 : euGluLeuPheIleAsnGluGluGlnTyrPhePhePheTyrIleValGluGluAlaLe : 180 !|||! !|||:!!:!!:!!:!!:!!||||||!:! ! ! !!.!.!.! !.!|| erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 181 : uGlyValGlyPheGlyIleTrpSerMetIleMetThrGlyThrPheLeuThrThrIle : 199 | !||| !.!!||| !:!::!!! ||| ...::: .!!||| uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 200 : ValLysHisLeuCysAlaThrTyrLysIleVal : 210 :!!:!!||| !|||!.! !|||! !|||||| IleGlnHisThrCysGlyLeuTyrThrIleVal 485895 : ATACAGCACACCTGTGGTTTGTATACAATCGTT : 485929 vulgar: CbirOr237PSE 141 210 . KQ414815.1 485722 485929 + 127 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485929 127 + . gene_id 1 ; sequence CbirOr237PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485929 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485929 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485929 127 + . alignment_id 1 ; Query CbirOr237PSE ; Align 485723 142 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr237PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 113 -> 210 Target range: 475479 -> 475773 114 : GluSerTyrIlePheIleLeuSerLeuCysIleIlePheLeuLeuPheAlaSerPhe< : 133 ...||||||...|||::: :::::: !! !:!!.!.:!!! ! .!!! !||| AsnSerTyrPhePheValGlyAsnIleValThrValLeuValTyrProThrIlePheT 475480 : aattcttattttttcgttgggaatattgtTACAGTACTGGTATACCCAACAATATTCA : 475537 134 : ->LeuIleThrMetGluCysLysAlaIleIleLeuAspValIleIleProMetAsnGl : 151 :!!||| !:!: ! !..!:!!! ||||||||| !:!::!!|||:!!||||| hrMetIleLeuLeuLeuPheSerSerLysIleLeuAspSerLeuLeuProLeuAsnGl 475538 : CCATGATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTACCCCTGAACGA : 475594 152 : uSerArgProArgLysValGluIleAspLeuGluLeuPheIleAsnGluGluGlnTyr : 170 ||||||||||!!! ! ! !||| :::||| ||||||||||||:!!:!!||| uSerArgProSerTrpSerLeuIleArgIleGluTyrPheIleAsnGluGlnLysTyr 475595 : GTCTCGTCCTAGCTGGTCTCTGAtacgaatagaatatttcataaacGAACAGAAATAC : 475651 171 : PhePhePheTyrIleValGluGluAlaLeuGlyValGlyPheGlyIleTrpSerMetI : 190 |||!:!.!. !:!::!! ! :!!.!!:!! !:!! !.!. ! ! !!! : PheTyrLeuSerValIleTyrGlnThrValThrIleLeuLeuPheGlyThrThrTyrV 475652 : TTTTATCTGAGCGTGATCTATCAGACTGTAACGATCCTTCTGTTTGGTACCACGTACG : 475711 191 : leMetThrGlyThrPheLeuThrThrIleValLysHisLeuCysAlaThrTyrLysIl : 209 !! |||! !.!!.!.!!!|||! ! :!!:!!|||! ! ::: ::::::|| alAlaThrGluAlaIlePheThrMetTrpLeuGlnHisCysIleSerLeuPheGluIl 475712 : TAGCAACTGAAGCAATATTTACCATGTGGTTGCAACATTGCATaagtttatttgaaat : 475768 210 : eVal : 210 |||| eVal 475769 : tgtt : 475773 vulgar: CbirOr237PSE 113 210 . KQ414815.1 475479 475773 + 112 M 19 57 G 0 3 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475480 475773 112 + . gene_id 2 ; sequence CbirOr237PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475480 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475480 475773 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475480 475773 112 + . alignment_id 2 ; Query CbirOr237PSE ; Align 475480 114 57 ; Align 475540 133 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr237PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 117 -> 209 Target range: 464561 -> 464840 118 : PheIleLeuSerLeuCysIleIlePheLeuLeuPheAlaSerPheLeuIleThrMetG : 137 !:!.!!|||!:!:!! :!: !|||:!!! ! !! ! !|||:!! ! !:!:| TyrPheLeuAsnIleProValCysPheIleProValIleLeuPheIleCysLeuLeuG 464562 : TACTTCCTGAATATTCCAGTGTGCTTCATTCCCGTTATACTGTTCATCTGTTTACTCG : 464619 138 : luCysLysAlaIleIleLeuAspValIleIleProMetAsnGluSerArgProArgLy : 156 || ! !! !||||||||||||:!! |||:!:|||||||||||| !!!.!:! luValLeuProAspIleLeuAspValValAlaProLeuAsnGluSerArgSerHisGl 464620 : AAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATGAATCTCGTTCTCATCA : 464676 157 : sValGluIleAspLeuGluLeuPheIleAsnGluGluGln<->TyrPhePhePheTyr : 174 ! ! !||| ! !|||!!!||||||!.!!!:.....! !!!:!.!! ! ! nTyrLeuIleThrAlaGluPhePheIleThrAspSerSerProAsnTyrIleValThr 464677 : ATACTTAATTACCGCGGAATTTTTCATCACTGATAGTTCGCCGAATTATATCGTAACT : 464733 175 : IleValGluGluAlaLeuGlyValGlyPheGlyIleTrpSerMetIleMetThrGlyT : 194 !|||! !! !:!! !:!! !.!.|||:!! !!!!!!:||| :!!! !| CysValGlyThrAspIleThrLeuIleMetGlyValThrThrIleIleAlaSerGluT 464734 : TGTGTTGGTACGGATATTACTCTTATCATGGGAGTCACGACAATAATTGCCTCCGAAA : 464793 195 : hrPheLeuThrThrIleValLysHisLeuCysAlaThrTyrLysIle : 209 ||||| ! ! !:!::!!:!!|||:!!||||||! !!:!|||||| hrPheThrPheLeuLeuLeuGlnHisIleCysAlaMetPheLysIle 464794 : CGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAATGTTCAAAATC : 464840 vulgar: CbirOr237PSE 117 209 . KQ414815.1 464561 464840 + 111 M 52 156 G 0 3 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464562 464840 111 + . gene_id 3 ; sequence CbirOr237PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464562 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464562 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464562 464840 111 + . alignment_id 3 ; Query CbirOr237PSE ; Align 464562 118 156 ; Align 464721 170 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr237PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 129 -> 209 Target range: 457171 -> 457411 130 : AlaSerPheLeuIleThrMetGluCysLysAlaIleIleLeuAspValIleIleProM : 149 ||| ! !!:!!! !|||:!!:!! ! !!|||:!!||||||:!!:!::!!|||: AlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProL 457172 : GCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCAT : 457229 150 : etAsnGluSerArgProArgLysValGluIleAspLeuGluLeuPheIleAsnGluGl : 168 !!||||||||||||||| !!:!!:!! ! :!! !|||! !|||:!!:!! !:! euAsnGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLy 457230 : TGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAA : 457286 169 : uGlnTyrPhePhePheTyrIleValGluGluAlaLeuGlyValGlyPheGlyIleTrp : 187 !:!!|||.!. !!:! !|||!.!.!. ! ! !!:!! !.!!!.! ! sLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThr 457287 : AAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACC : 457343 188 : SerMetIleMetThrGlyThrPheLeuThrThrIleValLysHisLeuCysAlaThrT : 207 !!!:!:! ! !.!! !:!!!!.|||! !|||! !||| !|||:!!|||!.! !! ThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuP 457344 : ACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGT : 457403 208 : yrLysIle : 209 :!|||:!! heLysLeu 457404 : TCAAGCTT : 457411 vulgar: CbirOr237PSE 129 209 . KQ414815.1 457171 457411 + 110 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457172 457411 110 + . gene_id 4 ; sequence CbirOr237PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457172 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457172 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457172 457411 110 + . alignment_id 4 ; Query CbirOr237PSE ; Align 457172 130 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr233PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 136 -> 214 Target range: 457177 -> 457411 137 : ValLeuMetAlaLeuLysCysLysProValIleLeuAspAlaIleMetProMetAsnV : 156 |||:!!! .!!|||:!! ! |||:!!:!!|||||| !:!::!:|||:!!|||! ValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnG 457178 : GTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACG : 457235 157 : alSerArgProArgLysLeuGluValGluAlaGluTyrPheLeuAspLysGlnGluTy : 175 !||||||||| !!:!!||| ! :!! !||||||||||||:!!|||! !:!!:!!|| luSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTy 457236 : AATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTA : 457292 176 : rPheTyrPheTyrLeuMetGluGluLeuValGlyLeuGlyIleGlyPheTyrSerAla : 194 |.!.:!!!:! !:!! !.!. :!!..! !!||| !|||!.! ! !!!! ! rMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeu 457293 : TATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTA : 457349 195 : LeuValIleAlaThrPheCysIleThrLeuValArgHisCysCysAlaThrLeuLysI : 214 !!.!! !! !:!!!!. !|||||| !|||! !||| !|||!.! !!!!|||: ThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysL 457350 : ACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGC : 457409 215 : le : 214 !! eu 457410 : TT : 457411 vulgar: CbirOr233PSE 136 214 . KQ414815.1 457177 457411 + 123 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457178 457411 123 + . gene_id 1 ; sequence CbirOr233PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457178 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457178 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457178 457411 123 + . alignment_id 1 ; Query CbirOr233PSE ; Align 457178 137 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr233PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 325 -> 381 Target range: 472677 -> 472848 326 : HisSerIleGluIleLeuLysPheThrTyrAspSerPheTrpTyrValAlaProValS : 345 :!!..!:!!! !||||||....!!! !|||:!!||| |||||| !:!!|||:!! AsnAspLeuGlyIleLeuSerLeuArgTyrAsnSerGluTrpTyrCysSerProLeuP 472678 : AATGATCTAGGAATCCTTTCTCTCAGGTATAATTCTGAATGGTATTGCTCGCCGTTGC : 472735 346 : erIleGlnLysLeuPhe<->LeuIleMetGlnArgSerIleLysLeuHisIleIleLe : 363 !!||||||||||||.!. !!!||||||||| !!!!!|||!!.|||:::|||..... roIleGlnLysLeuLeuHisPheIleMetGlnGlyArgIleAsnLeuAsnIlePhePh 472736 : CAATACAAAAATTGCTACATTTTATCATGCAGGGAAGGATAAATctgaacatattttt : 472792 364 : uMetGlyGlyLeuPheValPheSerMetGluGlyPheSerThrLeuLeuThrThr : 381 .||| ||| !|||||| !|||||||||||||||.!!.!!:!! !!.!||| eMetTyrGlyThrPheValProSerMetGluGlyPheGlyAlaValArgAsnThr 472793 : tatgtacGGTACATTCGTACCTTCGATGGAAGGTTTTGGCGCGGTAAGGAATACG : 472848 vulgar: CbirOr233PSE 325 381 . KQ414815.1 472677 472848 + 109 M 25 75 G 0 3 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 472678 472848 109 + . gene_id 2 ; sequence CbirOr233PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 472678 472848 . + . KQ414815.1 exonerate:protein2genome:local exon 472678 472848 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 472678 472848 109 + . alignment_id 2 ; Query CbirOr233PSE ; Align 472678 326 75 ; Align 472756 351 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr233PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 146 -> 215 Target range: 448091 -> 448298 147 : IleLeuAspAlaIleMetProMetAsnValSerArgProArgLysLeuGluValGluA : 166 ...|||||| :::||||||||||||||||||! !! !!.!:!!||| !! ! PheLeuAspIleLeuMetProMetAsnValSerThrArgHisGluLeuProPheLeuI 448092 : tttctcgatattttaATGCCAATGAACGTATCTACACGGCACGAGCTACCCTTCCTAA : 448149 167 : laGluTyrPheLeuAspLysGlnGluTyrPheTyrPheTyrLeuMetGluGluLeuVa : 185 !:!!! !|||! !|||:!!.!.:!!!:!|||:!!!:! |||:!: !:!!|| leGlnCysPheCysAspGlnAspLysPhePheHisTyrIleLeuValPheLeuIleVa 448150 : TTCAATGTTTCTGTGATCAAGATAAATTCTTCCACTATATATTAGTTTTCTTGATCGT : 448206 186 : lGlyLeuGlyIleGlyPheTyrSerAlaLeuValIleAlaThrPheCysIleThrLeu : 204 | ! ! !:!:||| ! !!.!|||!.!! !.!!||| !! !:!:! !!!! lLeuThrIleLeuGlyGlySerValValLeuAlaThrThrThrThrTyrLeuIlePhe 448207 : TCTCACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAACGACTTACTTGATATTC : 448263 205 : ValArgHisCysCysAlaThrLeuLysIleAla : 215 !!:!|||||||||!.! !!!!||||||||| SerGlnHisCysCysGlyLeuPheLysIleAla 448264 : AGTCAACATTGTTGTGGATTGTTCAAAATTGCA : 448298 vulgar: CbirOr233PSE 146 215 . KQ414815.1 448091 448298 + 103 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448092 448298 103 + . gene_id 3 ; sequence CbirOr233PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448092 448298 . + . KQ414815.1 exonerate:protein2genome:local exon 448092 448298 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448092 448298 103 + . alignment_id 3 ; Query CbirOr233PSE ; Align 448092 147 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 185 Query range: 88 -> 211 Target range: 456822 -> 457405 89 : LeuLysIleLeuValAspHisPhePheIleAsnTrpAspArgLeuGluSerProGluG : 108 :!!::! :!! !|||:!!.!! ! !:!!||| ! !|||:!!!:! !|||| IleArgGluIleTyrAspAsnIleAlaAspAspTrpLysSerLeuLysAsnMetGluG 456823 : ATACGGGAGATTTACGACAATATCGCTGACGATTGGAAATCATTGAAGAACATGGAAG : 456880 109 : luTyrGluIleValLysLysTyrThrGluAsnSerGlnArgPheSerLeuGlyTyrSe : 127 || !||||||::::::||||||..!.!...!.!!::!||||||!!!|||!.! :! luIleGluIleIleArgLysTyrAlaAsnGlyGlyArgArgPheThrLeuAlaIleAl 456881 : AAATCGagattattcgaaaatatgcGAACGGTGGCAGGAGATTTACACTTGCAATAGC : 456937 128 : r{S} >>>> Target Intron 1 >>>> {er}TyrCysPheIleSerTyrAla : 135 !{!} 214 bp { !}! ! !!:! !.!! ! a{I}++ ++{le}SerThrTyrCysGlyAlaLeu 456938 : A{A}gt.........................ag{TT}TCTACTTATTGTGGCGCACTG : 457175 136 : LeuPheMetCysIleSerIleIleProGlnMetLeuAsnValIleLeuProLeuAsnG : 155 :!!.!!! :!:..!:!!.!!||| !:!:|||:!!:!!:!::!!|||||||||| ValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnG 457176 : GTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACG : 457235 156 : luSerArgProValValValProTyrProGlyTyrTyrPheValAspGluGluGluTy : 174 ||||||||||| !! !:!! ! ! !!!.! ! |||||||||||| !:!!:!!|| luSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTy 457236 : AATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTA : 457292 175 : rPheLeuTyrIlePheCysHisAlaValValSerGlyGluIleMetMetThrGlyIle : 193 |.!.! !||||||.!!...||| !:!!..!!!! ! !||| ! ||| !:!! rMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeu 457293 : TATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTA : 457349 194 : ValAlaHisAspCysMetLeuLeuThrCysIleGluHisIleCysSerIlePhe : 211 ..!|||:!!!!:! !:!:|||:!!||| !:!! !|||:!!|||.!!:!:||| ThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPhe 457350 : ACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTC : 457405 vulgar: CbirOr230 88 211 . KQ414815.1 456822 457405 + 185 M 39 117 S 0 1 5 0 2 I 0 210 3 0 2 S 1 2 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 456823 457405 185 + . gene_id 1 ; sequence CbirOr230 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 456823 456940 . + . KQ414815.1 exonerate:protein2genome:local exon 456823 456940 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 456941 456942 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 456941 457154 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457153 457154 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457155 457405 . + . KQ414815.1 exonerate:protein2genome:local exon 457155 457405 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 456823 457405 185 + . alignment_id 1 ; Query CbirOr230 ; Align 456823 89 117 ; Align 457157 129 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 98 -> 213 Target range: 464418 -> 464840 99 : AsnTrpAspArgLeuGluSerProGluGluTyrGluIleValLysLysTyrThrGluA : 118 :!!|||:!!! !|||:!!!:! !!!!:||||||.!.|||:!!|||||||||||||||! AspTrpAsnThrLeuGlnAsnThrAspGluTyrAsnIleLeuLysLysTyrThrGluS 464419 : GACTGGAACACGCTACAAAACACGGATGAATATAATATTCTGAAAAAGTATACCGAGA : 464476 119 : snSerGlnArgPheSerLeuGlyTyr >>>> Target Intron 1 >>>> Ser : 127 :!:!! !! ! !!!:! ! !:!! 71 bp ! ! erAlaThrLeuValAsnLysIleHis-+ +-Ile 464477 : GCGCTACACTTGTTAACAAAATCCACtt.........................atATT : 464574 128 : SerTyrCysPheIleSerTyrAlaLeuPheMetCys<->IleSerIleIleProGlnM : 146 !! ||||||||| !! ! !||||||!!:||| :!!..!:!!:!:|||.!.! ProValCysPheIleProValIleLeuPheIleCysLeuLeuGluValLeuProAspI 464575 : CCAGTGTGCTTCATTCCCGTTATACTGTTCATCTGTTTACTCGAAGTATTGCCAGATA : 464634 147 : etLeuAsnValIleLeuProLeuAsnGluSerArgProValValValProTyrProGl : 165 !:|||:!!|||:!! !|||||||||||||||||| !! ! ! ! ! ! !!!. leLeuAspValValAlaProLeuAsnGluSerArgSerHisGlnTyrLeuIleThrAl 464635 : TTCTCGACGTGGTTGCGCCCCTCAATGAATCTCGTTCTCATCAATACTTAATTACCGC : 464691 166 : yTyrTyrPheValAspGluGluGluTyrPheLeuTyrIlePheCysHisAlaValVal : 184 ! ! !:!|||:!! !!!:.....! !! ! !:!! !||| !!.!..!! ! aGluPhePheIleThrAspSerSerProAsnTyrIleValThrCysValGlyThrAsp 464692 : GGAATTTTTCATCACTGATAGTTCGCCGAATTATATCGTAACTTGTGTTGGTACGGAT : 464748 185 : SerGlyGluIleMet<->MetThrGlyIleValAlaHisAspCysMetLeuLeuThrC : 203 ! ! ! |||||| :!:||| !|||:!!||| !!!: .!. !!!! !! IleThrLeuIleMetGlyValThrThrIleIleAlaSerGluThrPheThrPheLeuL 464749 : ATTACTCTTATCATGGGAGTCACGACAATAATTGCCTCCGAAACGTTCACTTTTTTGT : 464808 204 : ysIleGluHisIleCysSerIlePheAlaVal : 213 :!::!!|||||||||:!!!!:||| !:!! euLeuGlnHisIleCysAlaMetPheLysIle 464809 : TGCTGCAACATATCTGCGCAATGTTCAAAATC : 464840 vulgar: CbirOr230 98 213 . KQ414815.1 464418 464840 + 123 M 28 84 5 0 2 I 0 67 3 0 2 M 13 39 G 0 3 M 50 150 G 0 3 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464419 464840 123 + . gene_id 2 ; sequence CbirOr230 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 464419 464502 . + . KQ414815.1 exonerate:protein2genome:local exon 464419 464502 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 464503 464504 . + . intron_id 1 ; splice_site "TT" KQ414815.1 exonerate:protein2genome:local intron 464503 464573 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 464572 464573 . + . intron_id 0 ; splice_site "AT" KQ414815.1 exonerate:protein2genome:local cds 464574 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464574 464840 . + . insertions 6 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464419 464840 123 + . alignment_id 2 ; Query CbirOr230 ; Align 464419 99 84 ; Align 464574 127 39 ; Align 464616 140 150 ; Align 464769 190 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 108 -> 213 Target range: 481920 -> 482235 109 : TyrGluIleValLysLysTyrThrGluAsnSerGlnArgPheSerLeuGlyTyrSerS : 128 |||!!:||| !!:!! !|||!.! !!::||| ... :::: TyrAspIleHisArgMetTyrAsnIleSerSerIle***Asn***LysAsnIleThrA 481921 : TACGATATACATAGAATGTATAATATAAGcagtatttaaaattagaaaaatattacag : 481978 129 : erTyrCysPheIleSerTyrAlaLeuPheMetCysIleSerIleIleProGlnMetLe : 147 :!! !!:! !||| !:!!.!.!!: ! !!!: ! :!:|| laLeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerPheValLe 481979 : cGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCT : 482035 148 : uAsnValIleLeuProLeuAsnGluSerArgProValValValProTyrProGlyTyr : 166 |:!!||||||:!!||||||||||||!!!||| !! ! ! !!||| !! ! ! uAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMetGlu 482036 : AGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAG : 482092 167 : TyrPheValAspGluGluGluTyrPheLeuTyrIlePheCysHisAlaValValSerG : 186 ||||||:!!|||:!!:!!:!!|||! |||!:!||| ! !||| ! ! !!||| TyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerP 482093 : TACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCT : 482152 187 : lyGluIleMetMetThrGlyIleValAlaHisAspCysMetLeuLeuThrCysIleGl : 205 ! :!!:!: ||| !||||||!.! !!: !:!!:!!:!!! !!! :!!|| heLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGl 482153 : TTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGA : 482209 206 : uHisIleCysSerIlePheAlaVal : 213 |||| !...|||:!:|||.!!:!! uHisAlaAlaSerLeuPheThrLeu 482210 : ACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: CbirOr230 108 213 . KQ414815.1 481920 482235 + 115 M 105 315 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481921 482235 115 + . gene_id 3 ; sequence CbirOr230 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481921 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481921 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481921 482235 115 + . alignment_id 3 ; Query CbirOr230 ; Align 481921 109 315 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 125 -> 211 Target range: 460976 -> 461234 126 : TyrSerSerTyrCysPheIleSerTyrAlaLeuPheMetCysIleSerIleIleProG : 145 ::: :!! ! |||:!!!!! !:!!.!! !! ||| !! !:!:|||! PheLeuAlaIleValPheLeuCysLeuIleMetIleAlaLeuIleProTyrLeuProA 460977 : tttttaGCAATTGTATTCTTATGCCTAATAATGATCGCGTTAATTCCGTATTTGCCGC : 461034 146 : lnMetLeuAsnValIleLeuProLeuAsnGluSerArgProValValValProTyrPr : 164 :!!!:!!! :!!:!: !! !! !|||..!!!!||||||:!! !:!!||| ! rgIlePheAlaIleValThrHisGlnAsnArgThrArgProLeuLysIleProIleIl 461035 : GGATCTTCGCGATTGTGACGCATCAGAACAGAACTCGTCCGTTGAAAATACCGATCAT : 461091 165 : oGlyTyrTyrPheValAspGluGluGluTyrPheLeuTyrIlePheCysHisAlaVal : 183 !! ! ! ||| !||||||.!..!.||||||||| ! |||.!.! ||| ! ! eValGluTyrHisValAspHisAsnGluTyrPheAspLeuIleIleLeuHisIleAsn 461092 : CGTGGAGTATCACGTGGATCATAACGAGTACTTCGATCTGATCATATTACACATTAAC : 461148 184 : ValSerGlyGluIleMetMetThrGlyIleValAlaHisAspCysMetLeuLeuThrC : 203 !!!!! ! ||| .!. !! !:!!:!!:!! !!!: ! !|||..! PheCysHisPheIleGlyPheCysValValIleSerAlaGluValThrAsnLeuValL 461149 : TTCTGCCACTTTATCGGCTTCTGCGTTGTTATATCTGCTGAAGTGACAAATTTGGTAC : 461208 204 : ysIleGluHisIleCysSerIlePhe : 211 ! :!!||||||||||||:!:||| euAlaLysHisIleCysSerLeuPhe 461209 : TTGCGAAACACATTTGCTCGTTGTTC : 461234 vulgar: CbirOr230 125 211 . KQ414815.1 460976 461234 + 100 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 460977 461234 100 + . gene_id 4 ; sequence CbirOr230 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 460977 461234 . + . KQ414815.1 exonerate:protein2genome:local exon 460977 461234 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 460977 461234 100 + . alignment_id 4 ; Query CbirOr230 ; Align 460977 126 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr235PC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 123 -> 213 Target range: 457141 -> 457411 124 : SerCysValTyrIleIleValPheIleGlyThrPheValPheThrAlaIleGluCysA : 143 ||| :!! :!! !..!!:! !|||.!!.!.|||.!!|||.!!:!::!! ! SerMetIleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuP 457142 : tcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCT : 457199 144 : rgAlaValIleLeuAspValIleIleProMetAsnAsnSerArgProArgLysLeuGl : 162 ! !!:!!:!!||||||:!!:!::!!|||:!!|||.!.||||||||| !!:!!||| ! heProIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTy 457200 : TTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATA : 457256 163 : uValAspLeuGluMetPheValAspLysLysGlnTyrPhePheLeuTyrIleIleGln : 181 :!! !||| |||||||||! !|||:!!|||.!. !! ! !||| !!. rLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHis 457257 : CCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCAC : 457313 182 : GluValLeuThrTrpValIleGlyValCysSerIleValThrThrGlyThrValLeuT : 201 :!! ! ! :!!|||!.!!.! !!!!:!!..!.!!!.!! !:!!:!!|||! IleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuI 457314 : ATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTA : 457373 202 : hrThrValAlaGluHisCysCysAlaAlaTyrLysIle : 213 !||| !!.! !||| !|||!.! !!:!|||:!! leThrAsnValLeuHisValCysGlyLeuPheLysLeu 457374 : TAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr235PC 123 213 . KQ414815.1 457141 457411 + 137 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457142 457411 137 + . gene_id 1 ; sequence CbirOr235PC ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457142 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457142 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457142 457411 137 + . alignment_id 1 ; Query CbirOr235PC ; Align 457142 124 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr235PC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 145 -> 213 Target range: 485722 -> 485926 146 : IleLeuAspValIleIleProMetAsnAsnSerArgProArgLysLeuGluValAspL : 165 |||||||||:!!:!:||||||:!!||| !!!!!|||||||||! !:!! :!!:!!! IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 166 : euGluMetPheValAspLysLysGlnTyrPhePheLeuTyrIleIleGlnGluValLe : 184 !||| |||||||||:!!:!!:!!||||||!:!! ! ! ! !!!.! ||||| erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 185 : uThrTrpValIleGlyValCysSerIleValThrThrGlyThrValLeuThrThrVal : 203 | ! :!!||||||!.! !:!!:!!!:!||| :::::: .!!:!! uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 204 : AlaGluHisCysCysAlaAlaTyrLysIle : 213 !:!!||| !|||!.! !|||! !||| IleGlnHisThrCysGlyLeuTyrThrIle 485895 : ATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr235PC 145 213 . KQ414815.1 485722 485926 + 136 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485926 136 + . gene_id 2 ; sequence CbirOr235PC ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485926 136 + . alignment_id 2 ; Query CbirOr235PC ; Align 485723 146 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr235PC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 125 -> 213 Target range: 481971 -> 482235 126 : ValTyrIleIleValPheIleGlyThrPheValPheThrAlaIleGluCysArgAlaV : 145 ::: :!!:!!!:! !..!..!!!.:!!.!.! ! ! !.!. !::! IleThrAlaLeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerP 481972 : attacagcGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTT : 482029 146 : alIleLeuAspValIleIleProMetAsnAsnSerArgProArgLysLeuGluValAs : 164 !!:!!||||||||||||:!!|||:!:|||.!.!!!||| !!!.!:!!!!! !|||.. heValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSe 482030 : TCGTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATC : 482086 165 : pLeuGluMetPheValAspLysLysGlnTyrPhePheLeuTyrIleIleGlnGluVal : 183 .:!!||| |||:!!|||:!!:!!:!!|||! .!!!!! !! .!!!!.:!! ! rMetGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrp 482087 : AATGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGG : 482143 184 : LeuThrTrpValIleGlyValCysSerIleValThrThrGlyThrValLeuThrThrV : 203 !!!:!!!:::!!:!!! !!.! ! !|||||| !! !! !|||:!!:!!..!! ! PheSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetT 482144 : TTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGT : 482203 204 : alAlaGluHisCysCysAlaAlaTyrLysIle : 213 ! !||||||..!...::! !!:!! :!! rpLeuGluHisAlaAlaSerLeuPheThrLeu 482204 : GGCTTGAACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: CbirOr235PC 125 213 . KQ414815.1 481971 482235 + 100 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481972 482235 100 + . gene_id 3 ; sequence CbirOr235PC ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481972 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481972 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481972 482235 100 + . alignment_id 3 ; Query CbirOr235PC ; Align 481972 126 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr258 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 132 -> 213 Target range: 457168 -> 457411 133 : AlaSerIleValPheLeuThrPheGluCysArgAlaValIleLeuAspIleIleAlaP : 152 !.!:!!:!:|||.!! !|||!!.:!! ! ! !!:!!:!!|||||||||:!:!.!| GlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValP 457169 : GGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCC : 457226 153 : roMetAsnGluCysArgProArgLysThrGluIleAspLeuGluLeuPheValAsnGl : 171 ||:!!||||||! |||||| !!:!! ! ! :!! !|||! !||||||:!! roLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMe 457227 : CATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACAT : 457283 172 : uGluGlnTyrPheHisLeuTyrValIleGlnGluThrLeuGlySerPheIleAlaAsn : 190 !:!!:!!|||.!.|||! ! !:!! !!. ! ! ! !! !.!.|||||| ! tLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAla 457284 : GAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCT : 457340 191 : LeuSerIleIleAlaIleGlyMetPhePheAlaIleValAlaLysHisLeuCysAlaT : 210 !!!!:!!! !|||! !! ! !!..!! !! !!.! !|||:!!|||!.! ThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyL 457341 : ACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGAT : 457400 211 : hrTyrLysIle : 213 !!:!|||:!! euPheLysLeu 457401 : TGTTCAAGCTT : 457411 vulgar: CbirOr258 132 213 . KQ414815.1 457168 457411 + 101 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457169 457411 101 + . gene_id 1 ; sequence CbirOr258 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457169 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457169 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457169 457411 101 + . alignment_id 1 ; Query CbirOr258 ; Align 457169 133 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr259 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 132 -> 213 Target range: 457168 -> 457411 133 : SerAlaIleIlePheThrIlePheGluCysArgSerIleIleLeuAspValIleAlaP : 152 .!!|||:!::!!.!!|||! !!.:!! ! ! !!|||:!!||||||:!!:!:!.!| GlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValP 457169 : GGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCC : 457226 153 : roIleAsnGluSerArgProArgLysIleGluMetAspPheGluLeuPheValAspGl : 171 ||:!:||||||||||||||| !!:!!:!! ! :!: |||! !|||||||||.. roLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMe 457227 : CATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACAT : 457283 172 : nGluGlnTyrPheValLeuTyrLeuValGlnGluIleLeuGlyGlyPheIleGlyGly : 190 !:!!:!!|||.!. !! ! !:!!!.!!!. ||| ! !! !.!.|||!.!!.! tLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAla 457284 : GAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCT : 457340 191 : TrpAlaIleLeuThrAlaAlaThrPheLeuThrThrValMetLysHisPheCysAlaT : 210 .!!:!! !.!! !! !:!!!!.|||! !||| !:!: !||| !!|||!.! ThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyL 457341 : ACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGAT : 457400 211 : hrTyrLysIle : 213 !!:!|||:!! euPheLysLeu 457401 : TGTTCAAGCTT : 457411 vulgar: CbirOr259 132 213 . KQ414815.1 457168 457411 + 114 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457169 457411 114 + . gene_id 1 ; sequence CbirOr259 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457169 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457169 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457169 457411 114 + . alignment_id 1 ; Query CbirOr259 ; Align 457169 133 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr245INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 277 -> 331 Target range: 472683 -> 472848 278 : LeuSerCysValLeuLeuArgTyrAspThrLeuTrpTyrValAlaProValProIleG : 297 |||.!! !:!!! !|||||||||:!!:!! !|||||| !:!!|||:!!||||||| LeuGlyIleLeuSerLeuArgTyrAsnSerGluTrpTyrCysSerProLeuProIleG 472684 : CTAGGAATCCTTTCTCTCAGGTATAATTCTGAATGGTATTGCTCGCCGTTGCCAATAC : 472741 298 : lnLysLeuPheLeuPhe<->MetGlnIleSerIleLysAlaHisIleIleMetMetGl : 315 ||||||||.!.! !||| |||||| !!!!|||!!. :::|||......||| lnLysLeuLeuHisPheIleMetGlnGlyArgIleAsnLeuAsnIlePhePheMetTy 472742 : AAAAATTGCTACATTTTATCATGCAGGGAAGGATAAATctgaacatattttttatgta : 472798 316 : yGlyLeuPheAlaLeuSerMetGluGlyPheSerThrLeuLeuThrThr : 331 ||| !|||!.!! !|||||||||||||||.!!.!!:!! !!.!||| rGlyThrPheValProSerMetGluGlyPheGlyAlaValArgAsnThr 472799 : cGGTACATTCGTACCTTCGATGGAAGGTTTTGGCGCGGTAAGGAATACG : 472848 vulgar: CbirOr245INT 277 331 . KQ414815.1 472683 472848 + 106 M 25 75 G 0 3 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 472684 472848 106 + . gene_id 1 ; sequence CbirOr245INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 472684 472848 . + . KQ414815.1 exonerate:protein2genome:local exon 472684 472848 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 472684 472848 106 + . alignment_id 1 ; Query CbirOr245INT ; Align 472684 278 75 ; Align 472762 303 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr245INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 274 -> 328 Target range: 449581 -> 449743 275 : ValLeuCysLeuSerCysValLeuLeuArgTyrAspThrLeuTrpTyrValAlaProV : 294 :!! !|||:!!! ! !:!!! !|||||| !!||| !||||||! !||||||| LeuThrCysValPheThrProValTyrArgTyrTyrThrLysTrpTyrGluAlaProV 449582 : TTGACTTGTGTTTTCACACCTGTTTACAGGTACTACACAAAATGGTACGAAGCTCCAG : 449639 295 : alProIleGlnLysLeuPheLeuPheMetGlnIleSerIleLysAlaHisIleIleMe : 313 || !:!:||||||:!!!:!||||||:!!..!:!!!!!! !! ! ! !!:!!! !! alPheValGlnLysMetTyrLeuPheLeuMetLeuArgThrThrLysAspValLysIl 449640 : TGTTCGTGCAAAAGATGTACTTGTTCTTGATGCTAAGAACCACAAAAGACGTAAAGAT : 449696 314 : tMetGlyGlyLeuPheAlaLeuSerMetGluGlyPheSerThrLeu : 328 ::!: !|||!!!!:!.!!! !|||!!:||||||||||||:!!:!! eValLeuGlyPheTyrThrProSerIleGluGlyPheSerSerVal 449697 : AGTTCTTGGTTTCTATACCCCATCGATAGAGGGTTTCTCCTCGGTA : 449743 vulgar: CbirOr245INT 274 328 . KQ414815.1 449581 449743 + 103 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 449582 449743 103 + . gene_id 2 ; sequence CbirOr245INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 449582 449743 . + . KQ414815.1 exonerate:protein2genome:local exon 449582 449743 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 449582 449743 103 + . alignment_id 2 ; Query CbirOr245INT ; Align 449582 275 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr245INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 281 -> 329 Target range: 469208 -> 469358 282 : LeuLeuArgTyrAspThrLeuTrpTyrValAlaProValProIleGlnLysLeuPheL : 301 ||| !||||||:!!!:!|||||||||:!!||||||..!|||:!!::!||||||.!.| LeuAsnArgTyrAsnSerLeuTrpTyrIleAlaProThrProValArgLysLeuLeuL 469209 : TTGAACAGATACAATAGTCTATGGTATATAGCACCAACGCCTGTAAGGAAATTACTAT : 469266 302 : euPheMetGlnIle<->SerIleLysAlaHisIleIle<->MetMetGlyGlyLeuPh : 318 || !|||..!:!: !:!:!!!:! !!.!:!!.!! :!:||||||||||||!: euThrMetMetLeuGlnAsnValArgGlnArgValPheLysLeuMetGlyGlyLeuTy 469267 : TAACCATGATGCTGCAAAATGTAAGACAGCGCGTTTTCAAGTTAATGGGAGGATTGTA : 469323 319 : eAlaLeuSerMetGluGlyPheSerThrLeuLeu : 329 ! ! !!:!!!:||||||||||||! !:!!:!! rIleThrAsnIleGluGlyPheSerMetValIle 469324 : TATAACTAATATCGAAGGTTTTTCCATGGTAATC : 469358 vulgar: CbirOr245INT 281 329 . KQ414815.1 469208 469358 + 101 M 24 72 G 0 3 M 7 21 G 0 3 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 469209 469358 101 + . gene_id 3 ; sequence CbirOr245INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 469209 469358 . + . KQ414815.1 exonerate:protein2genome:local exon 469209 469358 . + . insertions 6 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 469209 469358 101 + . alignment_id 3 ; Query CbirOr245INT ; Align 469209 282 72 ; Align 469284 306 21 ; Align 469308 313 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr243PSE(S) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 328 -> 380 Target range: 472689 -> 472848 329 : IleLeuLysSerThrTyrAspThrLeuTrpTyrValAlaProValProIleGlnLysL : 348 ||||||... !! !|||:!!:!! !|||||| !:!!|||:!!||||||||||||| IleLeuSerLeuArgTyrAsnSerGluTrpTyrCysSerProLeuProIleGlnLysL 472690 : ATCCTTTCTCTCAGGTATAATTCTGAATGGTATTGCTCGCCGTTGCCAATACAAAAAT : 472747 349 : euPheLeuPhe<->MetGlnThrSerIleLysAlaHisMetLeuValLeuGlyGlyLe : 366 ||.!.! !||| |||||| !!!!|||!!. ::::::... ::: ||| euLeuHisPheIleMetGlnGlyArgIleAsnLeuAsnIlePhePheMetTyrGlyTh 472748 : TGCTACATTTTATCATGCAGGGAAGGATAAATctgaacatattttttatgtacGGTAC : 472804 367 : uPheValPheSerMetGluGlyPheSerThrIleLeuThrThr : 380 !|||||| !|||||||||||||||.!!.!!:!! !!.!||| rPheValProSerMetGluGlyPheGlyAlaValArgAsnThr 472805 : ATTCGTACCTTCGATGGAAGGTTTTGGCGCGGTAAGGAATACG : 472848 vulgar: CbirOr243PSE(S) 328 380 . KQ414815.1 472689 472848 + 100 M 23 69 G 0 3 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 472690 472848 100 + . gene_id 1 ; sequence CbirOr243PSE(S) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 472690 472848 . + . KQ414815.1 exonerate:protein2genome:local exon 472690 472848 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 472690 472848 100 + . alignment_id 1 ; Query CbirOr243PSE(S) ; Align 472690 329 69 ; Align 472762 352 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr255PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 132 -> 213 Target range: 457168 -> 457411 133 : GlyAlaPheGlyPheIleIleIleGluCysArgSerIleIleLeuAspValIleAlaP : 152 ||||||.!.! !.!!! !! :!::!! ! ! !!|||:!!||||||:!!:!:!.!| GlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValP 457169 : GGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCC : 457226 153 : roMetAsnGluSerArgProArgLysLeuGluLeuAspLeuGluLeuPheValAsnGl : 171 ||:!!||||||||||||||| !!:!!||| ! ||| !|||! !||||||:!! roLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMe 457227 : CATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACAT : 457283 172 : uGluGlnTyrPheLeuLeuTyrPheLeuGlnGluIleIleGlyMetGlyIleGlyIle : 190 !:!!:!!|||.!.! !! ! !.!! !!!. |||! !!:!: !|||!.! ! tLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAla 457284 : GAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCT : 457340 191 : TrpSerIleIleThrThrGlyThrPheLeuIleThrIleAlaLysHisSerCysAlaS : 210 !!!:!!! !.!!!.!! !:!!!!.|||||||||! !!.! !||| !|||!.!! ThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyL 457341 : ACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGAT : 457400 211 : erTyrLysIle : 213 !!:!|||:!! euPheLysLeu 457401 : TGTTCAAGCTT : 457411 vulgar: CbirOr255PSE 132 213 . KQ414815.1 457168 457411 + 108 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457169 457411 108 + . gene_id 1 ; sequence CbirOr255PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457169 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457169 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457169 457411 108 + . alignment_id 1 ; Query CbirOr255PSE ; Align 457169 133 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr255PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 138 -> 213 Target range: 464612 -> 464840 139 : IleIleGluCysArgSerIleIleLeuAspValIleAlaProMetAsnGluSerArgP : 158 :!!:!!||| ! !! !||||||||||||:!!||||||:!:|||||||||||| LeuLeuGluValLeuProAspIleLeuAspValValAlaProLeuAsnGluSerArgS 464613 : TTACTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATGAATCTCGTT : 464670 159 : roArgLysLeuGluLeuAspLeuGluLeuPheValAsnGluGluGln<->TyrPheLe : 176 !!!.!:!!! ! !:!! ! !|||!!!|||:!!!.!!!:.....! !!!:!:! erHisGlnTyrLeuIleThrAlaGluPhePheIleThrAspSerSerProAsnTyrIl 464671 : CTCATCAATACTTAATTACCGCGGAATTTTTCATCACTGATAGTTCGCCGAATTATAT : 464727 177 : uLeuTyrPheLeuGlnGluIleIleGlyMetGlyIleGlyIleTrpSerIleIleThr : 195 !:!! !! !:!! ! !||| !:!: !!!:|||:!! !!!!||||||.!! eValThrCysValGlyThrAspIleThrLeuIleMetGlyValThrThrIleIleAla 464728 : CGTAACTTGTGTTGGTACGGATATTACTCTTATCATGGGAGTCACGACAATAATTGCC : 464784 196 : ThrGlyThrPheLeuIleThrIleAlaLysHisSerCysAlaSerTyrLysIle : 213 :!!! !|||||| !.!! !:!: !:!!|||! !||||||! !!:!|||||| SerGluThrPheThrPheLeuLeuLeuGlnHisIleCysAlaMetPheLysIle 464785 : TCCGAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAATGTTCAAAATC : 464840 vulgar: CbirOr255PSE 138 213 . KQ414815.1 464612 464840 + 102 M 35 105 G 0 3 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464613 464840 102 + . gene_id 2 ; sequence CbirOr255PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464613 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464613 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464613 464840 102 + . alignment_id 2 ; Query CbirOr255PSE ; Align 464613 139 105 ; Align 464721 174 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr255PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 134 -> 214 Target range: 475533 -> 475773 135 : PheGlyPheIleIleIleGluCysArgSerIleIleLeuAspValIleAlaProMetA : 154 ||| !.!.|||:!::!! ! ! !|||! ||||||||| !:!: !|||:!!| PheThrMetIleLeuLeuLeuPheSerSerLysIleLeuAspSerLeuLeuProLeuA 475534 : TTCACCATGATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTACCCCTGA : 475591 155 : snGluSerArgProArgLysLeuGluLeuAspLeuGluLeuPheValAsnGluGluGl : 173 ||||||||||||||!!! !! ! !::: :::||| |||:::||||||:!!:! snGluSerArgProSerTrpSerLeuIleArgIleGluTyrPheIleAsnGluGlnLy 475592 : ACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaatagaatatttcataaacGAACAGAA : 475648 174 : nTyrPheLeuLeuTyrPheLeuGlnGluIleIleGlyMetGlyIleGlyIleTrpSer : 192 !||||||! !||| ! ! :!! ! :!!! !:!! !!!: !:!: ! ! !!! sTyrPheTyrLeuSerValIleTyrGlnThrValThrIleLeuLeuPheGlyThrThr 475649 : ATACTTTTATCTGAGCGTGATCTATCAGACTGTAACGATCCTTCTGTTTGGTACCACG : 475705 193 : IleIleThrThrGlyThrPheLeuIleThrIleAlaLysHisSerCysAlaSerTyrL : 212 !:!!.!!|||! !.!!.!.!!!! !! ! !:!!|||!!! ::: :::: TyrValAlaThrGluAlaIlePheThrMetTrpLeuGlnHisCysIleSerLeuPheG 475706 : TACGTAGCAACTGAAGCAATATTTACCATGTGGTTGCAACATTGCATaagtttatttg : 475765 213 : ysIleVal : 214 ::|||||| luIleVal 475766 : aaattgtt : 475773 vulgar: CbirOr255PSE 134 214 . KQ414815.1 475533 475773 + 100 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475534 475773 100 + . gene_id 3 ; sequence CbirOr255PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475534 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475534 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475534 475773 100 + . alignment_id 3 ; Query CbirOr255PSE ; Align 475534 135 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr241PSE(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 146 -> 215 Target range: 485722 -> 485929 147 : IleLeuAspValIleIleProMetAsnGluSerArgProArgLysAlaGluValAspL : 166 |||||||||:!!:!:||||||:!!||| ! !!!|||||||||! ! ! :!!:!!! IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 167 : euGluLeuPheValAspGluGlnGlnTyrPhePhePheTyrLeuLeuGluGluIleLe : 185 !|||! !|||||||||:!!|||:!!||||||!:! ! ! ! !.!.! :!!|| erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 186 : uGlyValGlyValGlyCysTrpSerValPheAlaValAlaThrLeuLeuThrThrVal : 204 | !||| !:!!|||... !:!!.!!::!... |||::: .!!:!! uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 205 : AlaLysHisSerCysAlaThrTyrLysIleVal : 215 !:!!|||!!!|||!.! !|||! !|||||| IleGlnHisThrCysGlyLeuTyrThrIleVal 485895 : ATACAGCACACCTGTGGTTTGTATACAATCGTT : 485929 vulgar: CbirOr241PSE(F) 146 215 . KQ414815.1 485722 485929 + 133 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485929 133 + . gene_id 1 ; sequence CbirOr241PSE(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485929 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485929 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485929 133 + . alignment_id 1 ; Query CbirOr241PSE(F) ; Align 485723 147 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr241PSE(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 145 -> 214 Target range: 457204 -> 457411 146 : IleIleLeuAspValIleIleProMetAsnGluSerArgProArgLysAlaGluValA : 165 |||:!!||||||:!!:!::!!|||:!!||||||||||||||| !!:!! ! ! :!! IleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrLeuT 457205 : ATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTA : 457262 166 : spLeuGluLeuPheValAspGluGlnGlnTyrPhePhePheTyrLeuLeuGluGluIl : 184 !|||! !||||||||| !:!!:!!|||.!. !!:! !:!! !.!. || hrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIl 457263 : CAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTAT : 457319 185 : eLeuGlyValGlyValGlyCysTrpSerValPheAlaValAlaThrLeuLeuThrThr : 203 | ! !!:!! !:!!!.!..! !!!:!! ||| !! !:!!||||||! !||| eThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThr 457320 : CACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACG : 457376 204 : ValAlaLysHisSerCysAlaThrTyrLysIle : 214 !!.! !||| !|||!.! !!:!|||:!! AsnValLeuHisValCysGlyLeuPheLysLeu 457377 : AACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr241PSE(F) 145 214 . KQ414815.1 457204 457411 + 111 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457205 457411 111 + . gene_id 2 ; sequence CbirOr241PSE(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457205 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457205 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457205 457411 111 + . alignment_id 2 ; Query CbirOr241PSE(F) ; Align 457205 146 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr241PSE(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 136 -> 215 Target range: 482001 -> 482238 137 : PheLeuIleSerThrGlnCysArgPheIleIleLeuAspValIleIleProMetAsnG : 156 .!.|||||| ! !!!. ! !.!!:!!||||||||||||:!!|||:!:|||| IleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValProLeuAsnG 482002 : ATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTCCTCTAAACG : 482059 157 : luSerArgProArgLysAlaGluValAspLeuGluLeuPheValAspGluGlnGlnTy : 175 ||!!!||| !!!.!:!! ! !|||...:!!|||! !|||:!!|||:!!|||:!!|| luThrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGlnGlnLysTy 482060 : AGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCAGCAGAAATA : 482116 176 : rPhePhePheTyrLeuLeuGluGluIleLeuGlyValGlyValGlyCysTrpSerVal : 194 |! .!!||| ! !!!!.!.:!! !!!..! !! !|||! !... !! !:!! rSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAlaThrIleIle 482117 : TTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCAACGATCATT : 482173 195 : PheAlaValAlaThrLeuLeuThrThrValAlaLysHisSerCysAlaThrTyrLysI : 214 !!!.!:!!! !||||||:!!..!! ! ! !:!!|||:!!...::! !!:!! : ValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerLeuPheThrL 482174 : GTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCTTGTTCACCC : 482233 215 : leVal : 215 !!||| euVal 482234 : TTGTA : 482238 vulgar: CbirOr241PSE(F) 136 215 . KQ414815.1 482001 482238 + 109 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482002 482238 109 + . gene_id 3 ; sequence CbirOr241PSE(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482002 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 482002 482238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482002 482238 109 + . alignment_id 3 ; Query CbirOr241PSE(F) ; Align 482002 137 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr241PSE(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 146 -> 215 Target range: 475566 -> 475773 147 : IleLeuAspValIleIleProMetAsnGluSerArgProArgLysAlaGluValAspL : 166 ||||||||| !:!::!!|||:!!|||||||||||||||!!! !:!! !::: : IleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleArgI 475567 : ATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaa : 475624 167 : euGluLeuPheValAspGluGlnGlnTyrPhePhePheTyrLeuLeuGluGluIleLe : 185 ::||| |||::::::||||||:!!||||||!:!.!. !:!!:!! ! :!!! !:! leGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrVa 475625 : tagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGT : 475681 186 : uGlyValGlyValGlyCysTrpSerValPheAlaValAlaThrLeuLeuThrThrVal : 204 ! !:!! !:!! ! !! !!! ! ! |||..!! !.!!:!!!!!|||! ! ! lThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrp 475682 : AACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGG : 475738 205 : AlaLysHisSerCysAlaThrTyrLysIleVal : 215 !:!!|||!!! ::: ::::::|||||| LeuGlnHisCysIleSerLeuPheGluIleVal 475739 : TTGCAACATTGCATaagtttatttgaaattgtt : 475773 vulgar: CbirOr241PSE(F) 146 215 . KQ414815.1 475566 475773 + 104 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475567 475773 104 + . gene_id 4 ; sequence CbirOr241PSE(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475567 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475567 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475567 475773 104 + . alignment_id 4 ; Query CbirOr241PSE(F) ; Align 475567 147 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr241PSE(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 332 -> 379 Target range: 469211 -> 469358 333 : SerThrTyrAsnThrLeuTrpTyrValAlaProLeuProIleGlnLysLeuPheLeuI : 352 !:!! !||||||!:!|||||||||:!!|||||| !|||:!!::!||||||.!.|||! AsnArgTyrAsnSerLeuTrpTyrIleAlaProThrProValArgLysLeuLeuLeuT 469212 : AACAGATACAATAGTCTATGGTATATAGCACCAACGCCTGTAAGGAAATTACTATTAA : 469269 353 : leMetGlnLysSerIleLysSerHisLysVal<-><->ValValGlyGlyLeuPheVa : 369 !|||..! !..!! ! !!!!!!.:::||| :!!:!!|||||||||!:!:! hrMetMetLeuGlnAsnValArgGlnArgValPheLysLeuMetGlyGlyLeuTyrIl 469270 : CCATGATGCTGCAAAATGTAAGACAGCGCGTTTTCAAGTTAATGGGAGGATTGTATAT : 469326 370 : lAlaSerIleGluGlyPheSerThrLeuVal : 379 !.!!!:!|||||||||||||||! !:!!:!! eThrAsnIleGluGlyPheSerMetValIle 469327 : AACTAATATCGAAGGTTTTTCCATGGTAATC : 469358 vulgar: CbirOr241PSE(F) 332 379 . KQ414815.1 469211 469358 + 102 M 30 90 G 0 6 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 469212 469358 102 + . gene_id 5 ; sequence CbirOr241PSE(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 469212 469358 . + . KQ414815.1 exonerate:protein2genome:local exon 469212 469358 . + . insertions 6 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 469212 469358 102 + . alignment_id 5 ; Query CbirOr241PSE(F) ; Align 469212 333 90 ; Align 469308 363 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr241PSE(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 325 -> 378 Target range: 472677 -> 472839 326 : HisSerValGlyLeuLeuGluSerThrTyrAsnThrLeuTrpTyrValAlaProLeuP : 345 :!!..!:!!|||:!!|||... !! !||||||:!! !|||||| !:!!||||||| AsnAspLeuGlyIleLeuSerLeuArgTyrAsnSerGluTrpTyrCysSerProLeuP 472678 : AATGATCTAGGAATCCTTTCTCTCAGGTATAATTCTGAATGGTATTGCTCGCCGTTGC : 472735 346 : roIleGlnLysLeuPhe<->LeuIleMetGlnLysSerIleLysSerHisLysValVa : 363 ||||||||||||||.!. !!!||||||||| !!!!|||!!. ::: roIleGlnLysLeuLeuHisPheIleMetGlnGlyArgIleAsnLeuAsnIlePhePh 472736 : CAATACAAAAATTGCTACATTTTATCATGCAGGGAAGGATAAATctgaacatattttt : 472792 364 : lValGlyGlyLeuPheValAlaSerIleGluGlyPheSerThrLeu : 378 ::: ||| !|||||| !!|||!!:|||||||||.!!.!!:!! eMetTyrGlyThrPheValProSerMetGluGlyPheGlyAlaVal 472793 : tatgtacGGTACATTCGTACCTTCGATGGAAGGTTTTGGCGCGGTA : 472839 vulgar: CbirOr241PSE(F) 325 378 . KQ414815.1 472677 472839 + 102 M 25 75 G 0 3 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 472678 472839 102 + . gene_id 6 ; sequence CbirOr241PSE(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 472678 472839 . + . KQ414815.1 exonerate:protein2genome:local exon 472678 472839 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 472678 472839 102 + . alignment_id 6 ; Query CbirOr241PSE(F) ; Align 472678 326 75 ; Align 472756 351 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr251PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 121 -> 190 Target range: 485722 -> 485929 122 : IleLeuAspIleIleIleProMetAsnGluSerArgGlnArgLysIleGluValAspP : 141 ||||||||||||:!:||||||:!!||| ! !!!|||! !|||! !||| :!!:!!! IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 142 : heGluLeuPheValAsnGluGluGlnTyrPhePheTrpTyrLeuValGlnGluValVa : 160 |||! !||||||:!!:!!:!!:!!||||||!:! ! !!.!!!.! |||:! erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 161 : lGlyValGlyIleGlyPheTrpSerValLeuThrThrGlyThrLeuLeuThrThrVal : 179 ! !||| !|||||| !:!!|||!:!||| |||::: .!!:!! uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 180 : ThrLysHisSerCysAlaThrTyrLysIleVal : 190 ! !:!!|||!!!|||!.! !|||! !|||||| IleGlnHisThrCysGlyLeuTyrThrIleVal 485895 : ATACAGCACACCTGTGGTTTGTATACAATCGTT : 485929 vulgar: CbirOr251PSE 121 190 . KQ414815.1 485722 485929 + 129 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485929 129 + . gene_id 1 ; sequence CbirOr251PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485929 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485929 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485929 129 + . alignment_id 1 ; Query CbirOr251PSE ; Align 485723 122 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr251PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 108 -> 189 Target range: 457168 -> 457411 109 : AlaAlaSerPheThrThrThrIleGluCysArgSerIleIleLeuAspIleIleIleP : 128 !.!||| ! !!! !||||||:!::!! ! ! !!|||:!!|||||||||:!::!!| GlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValP 457169 : GGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCC : 457226 129 : roMetAsnGluSerArgGlnArgLysIleGluValAspPheGluLeuPheValAsnGl : 147 ||:!!||||||||||||! !!:!!:!! ! :!! |||! !||||||:!! roLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMe 457227 : CATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACAT : 457283 148 : uGluGlnTyrPhePheTrpTyrLeuValGlnGluValValGlyValGlyIleGlyPhe : 166 !:!!:!!|||.!. !!:: !:!!!.!!!. :!!..! !!:!! !|||!.! ! tLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAla 457284 : GAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCT : 457340 167 : TrpSerValLeuThrThrGlyThrLeuLeuThrThrValThrLysHisSerCysAlaT : 186 !!!:!! !.!!!.!! !:!!||||||! !||| !..! !||| !|||!.! ThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyL 457341 : ACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGAT : 457400 187 : hrTyrLysIle : 189 !!:!|||:!! euPheLysLeu 457401 : TGTTCAAGCTT : 457411 vulgar: CbirOr251PSE 108 189 . KQ414815.1 457168 457411 + 108 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457169 457411 108 + . gene_id 2 ; sequence CbirOr251PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457169 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457169 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457169 457411 108 + . alignment_id 2 ; Query CbirOr251PSE ; Align 457169 109 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr251PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 119 -> 190 Target range: 475560 -> 475773 120 : SerIleIleLeuAspIleIleIleProMetAsnGluSerArgGlnArgLysIleGluV : 139 |||! ||||||||| !:!::!!|||:!!||||||||||||! !!! ! ! !: SerLysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuI 475561 : TCTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGA : 475618 140 : alAspPheGluLeuPheValAsnGluGluGlnTyrPhePheTrpTyrLeuValGlnGl : 158 :: ...||| |||:::||||||:!!:!!||||||!:! ! !:!!:!! ! :! leArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGl 475619 : tacgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCA : 475675 159 : uValValGlyValGlyIleGlyPheTrpSerValLeuThrThrGlyThrLeuLeuThr : 177 !..!||| !:!! !:!: ! ! !!! !:!!.!!|||! !.!!:!!!!!||| nThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThr 475676 : GACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACC : 475732 178 : ThrValThrLysHisSerCysAlaThrTyrLysIleVal : 190 ! ! ! !:!!|||!!! ::: ::::::|||||| MetTrpLeuGlnHisCysIleSerLeuPheGluIleVal 475733 : ATGTGGTTGCAACATTGCATaagtttatttgaaattgtt : 475773 vulgar: CbirOr251PSE 119 190 . KQ414815.1 475560 475773 + 101 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475561 475773 101 + . gene_id 3 ; sequence CbirOr251PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475561 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475561 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475561 475773 101 + . alignment_id 3 ; Query CbirOr251PSE ; Align 475561 120 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr250PSE(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 145 -> 214 Target range: 485722 -> 485929 146 : IleLeuAspIleIleIleProMetAsnGluSerArgProArgLysIleGluMetAspL : 165 ||||||||||||:!:||||||:!!||| ! !!!|||||||||! !||| !!::!!! IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 166 : euGluPhePheValAsnGluGluGlnTyrLeuPheLeuTyrLeuMetGlnGluGlyLe : 184 !||| !||||||:!!:!!:!!:!!|||!!!!:!! ! ! ! !!.! ! !|| erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 185 : uGlyValGlyIleGlyAlaTrpSerValIleThrThrGlyThrIleLeuThrThrVal : 203 | !||| !||||||||| !:!!:!!!:!||| :::::: .!!:!! uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 204 : AlaLysHisSerCysAlaThrTyrLysIleVal : 214 !:!!|||!!!|||!.! !|||! !|||||| IleGlnHisThrCysGlyLeuTyrThrIleVal 485895 : ATACAGCACACCTGTGGTTTGTATACAATCGTT : 485929 vulgar: CbirOr250PSE(F) 145 214 . KQ414815.1 485722 485929 + 129 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485929 129 + . gene_id 1 ; sequence CbirOr250PSE(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485929 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485929 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485929 129 + . alignment_id 1 ; Query CbirOr250PSE(F) ; Align 485723 146 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr250PSE(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 132 -> 213 Target range: 457168 -> 457411 133 : AlaAlaSerValMetAlaThrIleGluCysArgSerIleIleLeuAspIleIleIleP : 152 !.!||| !|||!!:.!!|||:!::!! ! ! !!|||:!!|||||||||:!::!!| GlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValP 457169 : GGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCC : 457226 153 : roMetAsnGluSerArgProArgLysIleGluMetAspLeuGluPhePheValAsnGl : 171 ||:!!||||||||||||||| !!:!!:!! ! :!: !|||!:!||||||:!! roLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMe 457227 : CATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACAT : 457283 172 : uGluGlnTyrLeuPheLeuTyrLeuMetGlnGluGlyLeuGlyValGlyIleGlyAla : 190 !:!!:!!|||:!! !! ! !:!! !!!. ! ! !!:!! !|||!.!||| tLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAla 457284 : GAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCT : 457340 191 : TrpSerValIleThrThrGlyThrIleLeuThrThrValAlaLysHisSerCysAlaT : 210 !!!:!!! !.!!!.!! !:!!:!!|||! !||| !!.! !||| !|||!.! ThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyL 457341 : ACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGAT : 457400 211 : hrTyrLysIle : 213 !!:!|||:!! euPheLysLeu 457401 : TGTTCAAGCTT : 457411 vulgar: CbirOr250PSE(F) 132 213 . KQ414815.1 457168 457411 + 118 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457169 457411 118 + . gene_id 2 ; sequence CbirOr250PSE(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457169 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457169 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457169 457411 118 + . alignment_id 2 ; Query CbirOr250PSE(F) ; Align 457169 133 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr250PSE(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 143 -> 214 Target range: 475560 -> 475773 144 : SerIleIleLeuAspIleIleIleProMetAsnGluSerArgProArgLysIleGluM : 163 |||! ||||||||| !:!::!!|||:!!|||||||||||||||!!! ! ! !! SerLysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuI 475561 : TCTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGA : 475618 164 : etAspLeuGluPhePheValAsnGluGluGlnTyrLeuPheLeuTyrLeuMetGlnGl : 182 :: :::|||:::|||:::||||||:!!:!!|||!!!!:!||| !:!!!!: ! :! leArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGl 475619 : tacgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCA : 475675 183 : uGlyLeuGlyValGlyIleGlyAlaTrpSerValIleThrThrGlyThrIleLeuThr : 201 ! !:!! !:!! !:!: !!.! !!! !:!!.!!|||! !.!!|||!!!||| nThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThr 475676 : GACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACC : 475732 202 : ThrValAlaLysHisSerCysAlaThrTyrLysIleVal : 214 ! ! ! !:!!|||!!! ::: ::::::|||||| MetTrpLeuGlnHisCysIleSerLeuPheGluIleVal 475733 : ATGTGGTTGCAACATTGCATaagtttatttgaaattgtt : 475773 vulgar: CbirOr250PSE(F) 143 214 . KQ414815.1 475560 475773 + 113 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475561 475773 113 + . gene_id 3 ; sequence CbirOr250PSE(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475561 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475561 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475561 475773 113 + . alignment_id 3 ; Query CbirOr250PSE(F) ; Align 475561 144 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr252 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 132 -> 213 Target range: 457168 -> 457411 133 : AlaAlaIleIlePheValIlePheGluCysSerProIleIleLeuAspValIleAlaP : 152 !.!|||:!::!!.!!..!! !!.:!! !! !||||||:!!||||||:!!:!:!.!| GlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValP 457169 : GGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCC : 457226 153 : roMetAsnLysSerArgLeuArgLysValGluValAspPheGluLeuPheValAspGl : 171 ||:!!|||:!!||||||! ! !!:!!:!! ! :!! |||! !|||||||||.. roLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMe 457227 : CATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACAT : 457283 172 : nGluGlnTyrPheValLeuTyrLeuValHisGluIleLeuGlyAlaThrIleSerIle : 190 !:!!:!!|||.!. !! ! !:!!!.!||| ||| ! !! ! !|||:!! ! tLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAla 457284 : GAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCT : 457340 191 : TrpSerIleIleThrThrAlaThrPheLeuIleThrValPheLysHisSerCysAlaT : 210 !!!:!!! !.!!!.!! !:!!!!.||||||||| ! ! !||| !|||!.! ThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyL 457341 : ACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGAT : 457400 211 : hrTyrLysIle : 213 !!:!|||:!! euPheLysLeu 457401 : TGTTCAAGCTT : 457411 vulgar: CbirOr252 132 213 . KQ414815.1 457168 457411 + 117 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457169 457411 117 + . gene_id 1 ; sequence CbirOr252 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457169 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457169 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457169 457411 117 + . alignment_id 1 ; Query CbirOr252 ; Align 457169 133 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr252 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 132 -> 213 Target range: 481992 -> 482235 133 : AlaAlaIleIlePheValIlePheGluCysSerProIleIleLeuAspValIleAlaP : 152 :!!!.!:!:|||.!.:!!:!:! !.!. ||| !.!!:!!||||||||||||!.!| SerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValP 481993 : TCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTC : 482050 153 : roMetAsnLysSerArgLeuArgLysValGluValAspPheGluLeuPheValAspGl : 171 ||:!:|||:!!!!!||| !!.!:!! !! !|||....!.|||! !|||:!!||||| roLeuAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGl 482051 : CTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCA : 482107 172 : nGluGlnTyrPheValLeuTyrLeuValHisGluIleLeuGlyAlaThrIleSerIle : 190 |:!!:!!|||! :!!!!! ! ! !!|||:!! !!!..! ! !:!! ! ! nGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAla 482108 : GCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCA : 482164 191 : TrpSerIleIleThrThrAlaThrPheLeuIleThrValPheLysHisSerCysAlaT : 210 !! !|||:!! !! !! !|||!!.:!!:!!! ! !.!!:!!|||:!!...::! ThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerL 482165 : ACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCT : 482224 211 : hrTyrLysIle : 213 !!:!! :!! euPheThrLeu 482225 : TGTTCACCCTT : 482235 vulgar: CbirOr252 132 213 . KQ414815.1 481992 482235 + 110 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481993 482235 110 + . gene_id 2 ; sequence CbirOr252 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481993 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481993 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481993 482235 110 + . alignment_id 2 ; Query CbirOr252 ; Align 481993 133 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr252 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 127 -> 213 Target range: 464579 -> 464840 128 : IlePheLeuValValAlaAlaIleIlePheValIlePheGluCysSerProIleIleL : 147 :!:! !!!!:!! !!.! !:!:.!!.!! !:!!.!!||| ! !||| !|||| ValCysPheIleProValIleLeuPheIleCysLeuLeuGluValLeuProAspIleL 464580 : GTGTGCTTCATTCCCGTTATACTGTTCATCTGTTTACTCGAAGTATTGCCAGATATTC : 464637 148 : euAspValIleAlaProMetAsnLysSerArgLeuArgLysValGluValAspPheGl : 166 ||||||||:!!||||||:!:|||:!!||||||! !!.!:!! ! !:!! ! || euAspValValAlaProLeuAsnGluSerArgSerHisGlnTyrLeuIleThrAlaGl 464638 : TCGACGTGGTTGCGCCCCTCAATGAATCTCGTTCTCATCAATACTTAATTACCGCGGA : 464694 167 : uLeuPheVal<->AspGlnGluGlnTyrPheValLeuTyrLeuValHisGluIleLeu : 184 |!!!|||:!! |||.....!! ! !!!:!:!!:!! !! !||| ! ! !:!! uPhePheIleThrAspSerSerProAsnTyrIleValThrCysValGlyThrAspIle 464695 : ATTTTTCATCACTGATAGTTCGCCGAATTATATCGTAACTTGTGTTGGTACGGATATT : 464751 185 : GlyAlaThrIleSerIleTrpSerIleIleThrThrAlaThrPheLeuIleThrValP : 204 ! !! !!!:.!!:!! !!!!||||||.!!:!!! !|||||| !.!! !:!!. ThrLeuIleMetGlyValThrThrIleIleAlaSerGluThrPheThrPheLeuLeuL 464752 : ACTCTTATCATGGGAGTCACGACAATAATTGCCTCCGAAACGTTCACTTTTTTGTTGC : 464811 205 : heLysHisSerCysAlaThrTyrLysIle : 213 !.:!!|||! !||||||! !!:!|||||| euGlnHisIleCysAlaMetPheLysIle 464812 : TGCAACATATCTGCGCAATGTTCAAAATC : 464840 vulgar: CbirOr252 127 213 . KQ414815.1 464579 464840 + 106 M 42 126 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464580 464840 106 + . gene_id 3 ; sequence CbirOr252 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464580 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464580 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464580 464840 106 + . alignment_id 3 ; Query CbirOr252 ; Align 464580 128 126 ; Align 464709 170 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr257NI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 119 -> 214 Target range: 485641 -> 485926 120 : SerTyrIleLeuSerLeuPheAlaTyrLeuMetLeuProThrCysValPheIleLeuV : 139 ||| !:!! !!:! !.!! ! :!!!!::!! ! !!! :!!.!!:!:|||: SerIleLeuThrAsnSerIleIleAlaValIleIleGlyProSerLeuLeuValLeuI 485642 : AGTATTTTAACGAACAGTATTATTGCAGTAATTATCGGTCCATCGTTACTTGTGCTGA : 485699 140 : alMetIleGluCysLysProLeuIleLeuAspIleValIleProMetAsnValPheAr : 158 !!:!: ! !! !!!. ! !||||||||||||:!!||||||:!!||| ! !|| leLeuGlyIlePheAsnAsnSerIleLeuAspIleLeuIleProLeuAsnTyrThrAr 485700 : TTCTTGGTATATTTAACAACAGTATTCTGGACATTTTGATTCCTTTGAATTACACTCG : 485756 159 : gProArgLysThrGluMetAspPheGluPhePheValAspLysGluGlnTyrPhePhe : 177 |||||||! !! ! !!::!!! ||| !|||||||||:!!:!!:!!||||||!:! gProArgThrIleProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyr 485757 : TCCGCGGACGATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTAC : 485813 178 : LeuTyrIleMetGlnGluIleLeuThrLeuValThrGlyPheTyrSerIleLeuIleP : 197 ! ! ! ! !!.! :!!||| !:!!:!!! !||| !:!!|||! ! ProIleAlaAlaHisValValLeuPheValIleIleGlyAlaIleValLeuLeuSerT 485814 : CCTATTGCAGCACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCa : 485873 198 : roGlyThrPhePheValThrIleGlyArgHisCysCysAlaIleTyrLysIle : 214 ......:::.!!||| !!:!||| !|||!.!:!:|||! !||| hrGluIleLeuIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIle 485874 : ccgaaatattaattatggCGATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr257NI 119 214 . KQ414815.1 485641 485926 + 120 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485642 485926 120 + . gene_id 1 ; sequence CbirOr257NI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485642 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485642 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485642 485926 120 + . alignment_id 1 ; Query CbirOr257NI ; Align 485642 120 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr257NI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 134 -> 214 Target range: 457171 -> 457411 135 : ValPheIleLeuValMetIleGluCysLysProLeuIleLeuAspIleValIleProM : 154 !.!.!.:!!:!!..!! !:!::!! ! |||:!!:!!||||||||||||:!!|||: AlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProL 457172 : GCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCAT : 457229 155 : etAsnValPheArgProArgLysThrGluMetAspPheGluPhePheValAspLysGl : 173 !!|||! !! |||||| !!:!! ! ! :!: |||!:!|||||||||! !:! euAsnGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLy 457230 : TGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAA : 457286 174 : uGlnTyrPhePheLeuTyrIleMetGlnGluIleLeuThrLeuValThrGlyPheTyr : 192 !:!!|||.!. !! ! !||| !!!. ||| ! !|||:!!! !!.! ! ! sLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThr 457287 : AAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACC : 457343 193 : SerIleLeuIleProGlyThrPhePheValThrIleGlyArgHisCysCysAlaIleT : 212 !!!:!! ! ! !! !:!!!!..!!:!!|||! !! !! !||| !|||!.!:!:! ThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuP 457344 : ACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGT : 457403 213 : yrLysIle : 214 :!|||:!! heLysLeu 457404 : TCAAGCTT : 457411 vulgar: CbirOr257NI 134 214 . KQ414815.1 457171 457411 + 110 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457172 457411 110 + . gene_id 2 ; sequence CbirOr257NI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457172 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457172 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457172 457411 110 + . alignment_id 2 ; Query CbirOr257NI ; Align 457172 135 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr257NI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 138 -> 216 Target range: 471582 -> 471816 139 : ValMetIleGluCysLysProLeuIleLeuAspIleValIleProMetAsnValPheA : 158 |||!!::!:... ..!||||||||||||||||||:!!||||||:!!|||..!! | ValIleLeuSerMetSerProLeuIleLeuAspIleIleIleProLeuAsnThrSerA 471583 : GTAATACTGTCCATGTCGCCTCTTATTCTCGATATTATAATACCTCTGAACACGTCAC : 471640 159 : rgProArgLysThrGluMetAspPheGluPhePheValAspLysGluGlnTyrPhePh : 177 |||||||| ! ! !.!. |||!!:|||.!! !:!!:!!|||:!!||||||! rgProArgTyrPheProPheThrPheAspPheIleProAsnGlnGluGluTyrPhe** 471641 : GTCCACGTTACTTTCCATTTACGTTCGATTTCATTCCCAATCAAGAGGAATACTTCTA : 471697 178 : eLeuTyrIleMetGlnGluIleLeuThrLeuValThrGlyPheTyrSerIleLeuIle : 196 ! ! !! !!!: ... !:!! !! !:!! !|||!!. :!!!!::!!! ! *ProIleThrIlePheSerGlyIleLeuCysIleCysGlyLeuAlaAlaMetIleSer 471698 : ACCGATTACTATCTTTTCTGGCATATTGTGCATTTGTGGATTAGCAGCAATGATAAGT : 471754 197 : ProGlyThrPhePheValThrIleGlyArgHisCysCysAlaIleTyrLysIleAlaS : 216 !! ! !.!..!!:!!! !! !! ! !||| !!!.!:!:|||!!.||||||! SerGluGlyLeuLeuMetMetAsnValLeuHisValArgGlyLeuTyrAsnIleAlaT 471755 : AGCGAGGGTCTGCTTATGATGAATGTTTTACACGTACGTGGATTGTATAACATCGCTA : 471814 217 : er : 216 !! hr 471815 : CG : 471816 vulgar: CbirOr257NI 138 216 . KQ414815.1 471582 471816 + 102 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471583 471816 102 + . gene_id 3 ; sequence CbirOr257NI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471583 471816 . + . KQ414815.1 exonerate:protein2genome:local exon 471583 471816 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471583 471816 102 + . alignment_id 3 ; Query CbirOr257NI ; Align 471583 139 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr257NI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 281 -> 329 Target range: 469208 -> 469358 282 : LeuPheArgTyrAspThrLeuTrpTyrValAlaProLeuProIleGlnLysLeuPheL : 301 ||| !||||||:!!!:!|||||||||:!!|||||| !|||:!!::!||||||.!.| LeuAsnArgTyrAsnSerLeuTrpTyrIleAlaProThrProValArgLysLeuLeuL 469209 : TTGAACAGATACAATAGTCTATGGTATATAGCACCAACGCCTGTAAGGAAATTACTAT : 469266 302 : eu<->IleMetGlnLysSerIleGlnAlaHisThrLeuLysIle<->GlyGlyLeuPh : 318 || !!:|||! !:!!!:!:!!::! !!.!..!!!!|||:!! |||||||||!: euThrMetMetLeuGlnAsnValArgGlnArgValPheLysLeuMetGlyGlyLeuTy 469267 : TAACCATGATGCTGCAAAATGTAAGACAGCGCGTTTTCAAGTTAATGGGAGGATTGTA : 469323 319 : eThrValSerValGluGlyPheSerThrIleLeu : 329 !! !..!!:!:!!||||||||||||! !:!!:!! rIleThrAsnIleGluGlyPheSerMetValIle 469324 : TATAACTAATATCGAAGGTTTTTCCATGGTAATC : 469358 vulgar: CbirOr257NI 281 329 . KQ414815.1 469208 469358 + 101 M 20 60 G 0 3 M 13 39 G 0 3 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 469209 469358 101 + . gene_id 4 ; sequence CbirOr257NI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 469209 469358 . + . KQ414815.1 exonerate:protein2genome:local exon 469209 469358 . + . insertions 6 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 469209 469358 101 + . alignment_id 4 ; Query CbirOr257NI ; Align 469209 282 60 ; Align 469272 302 39 ; Align 469314 315 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr247 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 145 -> 213 Target range: 485722 -> 485926 146 : IlePheAspValIleIleProIleAsnGluThrArgProArgThrValGluIleAspL : 165 |||.!.|||:!!:!:||||||:!:||| ! |||||||||||||||:!! |||:!!! IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 166 : euGluThrPheIleAspLysAspLysTyrPhePheValTyrIleValGluGluLeuLe : 184 !||| !|||:!!|||:!!.!.|||||||||!:! ! ! !!.!.!.! :!!|| erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 185 : uGlyLeuGlyThrGlyLeuCysThrValValThrThrGlyThrPheLeuAsnMetIle : 203 | !:!! !! !||| ! ..!:!!:!!!:!||| ...::: !||| uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 204 : GlyLysHisCysCysAlaThrTyrLysIle : 213 !:!!||| !|||!.! !|||! !||| IleGlnHisThrCysGlyLeuTyrThrIle 485895 : ATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr247 145 213 . KQ414815.1 485722 485926 + 130 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485926 130 + . gene_id 1 ; sequence CbirOr247 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485926 130 + . alignment_id 1 ; Query CbirOr247 ; Align 485723 146 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr247 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 130 -> 213 Target range: 457162 -> 457411 131 : PheThrGlyMetPheThrPheLeuThrValGluCysGlyProValIlePheAspValI : 150 !:! !||| .!...!.!! !|||:!!:!! ! !|||:!!:!!.!!|||:!!: TyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleV 457163 : TATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTG : 457220 151 : leIleProIleAsnGluThrArgProArgThrValGluIleAspLeuGluThrPheIl : 169 !::!!|||:!:||||||:!!|||||| !! !:!! ! :!! !||| !|||:! alValProLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheVa 457221 : TGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGT : 457277 170 : eAspLysAspLysTyrPhePheValTyrIleValGluGluLeuLeuGlyLeuGlyThr : 188 !|||! ! ! ||||||.!. ! ! !|||!.!.!. :!! ! !!||| !! ! lAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIle 457278 : CGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATC : 457334 189 : GlyLeuCysThrValValThrThrGlyThrPheLeuAsnMetIleGlyLysHisCysC : 208 !.! ! !|||:!!..!.!!!.!! !:!!!!.|||! ! !! !! ! !||| !| AlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValC 457335 : GCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTT : 457394 209 : ysAlaThrTyrLysIle : 213 ||!.! !!:!|||:!! ysGlyLeuPheLysLeu 457395 : GTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr247 130 213 . KQ414815.1 457162 457411 + 108 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457163 457411 108 + . gene_id 2 ; sequence CbirOr247 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457163 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457163 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457163 457411 108 + . alignment_id 2 ; Query CbirOr247 ; Align 457163 131 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr247 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 331 -> 378 Target range: 469211 -> 469358 332 : SerThrTyrAsnSerLeuTrpTyrLeuAlaProLeuProIleGlnLysLeuPheLeuI : 351 !:!! !||||||||||||||||||:!!|||||| !|||:!!::!||||||.!.|||! AsnArgTyrAsnSerLeuTrpTyrIleAlaProThrProValArgLysLeuLeuLeuT 469212 : AACAGATACAATAGTCTATGGTATATAGCACCAACGCCTGTAAGGAAATTACTATTAA : 469269 352 : leMetGlnArgSerValLysSerHisLysIle<-><->ValMetGlyGlyLeuPheTh : 368 !|||..!! !..! ! !!!!!!.::::!! :!!||||||||||||!:!! hrMetMetLeuGlnAsnValArgGlnArgValPheLysLeuMetGlyGlyLeuTyrIl 469270 : CCATGATGCTGCAAAATGTAAGACAGCGCGTTTTCAAGTTAATGGGAGGATTGTATAT : 469326 369 : rLeuSerIleGluGlyPheSerThrLeuIle : 378 ! !!:!|||||||||||||||! !:!!||| eThrAsnIleGluGlyPheSerMetValIle 469327 : AACTAATATCGAAGGTTTTTCCATGGTAATC : 469358 vulgar: CbirOr247 331 378 . KQ414815.1 469211 469358 + 103 M 30 90 G 0 6 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 469212 469358 103 + . gene_id 3 ; sequence CbirOr247 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 469212 469358 . + . KQ414815.1 exonerate:protein2genome:local exon 469212 469358 . + . insertions 6 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 469212 469358 103 + . alignment_id 3 ; Query CbirOr247 ; Align 469212 332 90 ; Align 469308 362 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr254 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 145 -> 214 Target range: 485722 -> 485929 146 : IleLeuAspValIleValProIleAsnLysSerArgProArgLysValGluMetAspL : 165 |||||||||:!!:!::!!|||:!:||| ! !!!|||||||||! !:!! !!::!!! IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 166 : euGluLeuPheValAspGluGluGlnTyrPhePheLeuTyrLeuAlaGlnGluLeuLe : 184 !|||! !|||||||||:!!:!!:!!||||||!:!! ! ! !|||!!.! :!!|| erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 185 : uGlyIleGlyIleSerAlaTrpSerLeuValThrThrGlyThrPheLeuIleThrIle : 203 | !:!! !|||.!!||| !|||:!!!:!||| ...::::::.!!||| uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 204 : ValLysHisLeuCysAlaThrTyrLysIleVal : 214 :!!:!!||| !|||!.! !|||! !|||||| IleGlnHisThrCysGlyLeuTyrThrIleVal 485895 : ATACAGCACACCTGTGGTTTGTATACAATCGTT : 485929 vulgar: CbirOr254 145 214 . KQ414815.1 485722 485929 + 142 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485929 142 + . gene_id 1 ; sequence CbirOr254 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485929 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485929 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485929 142 + . alignment_id 1 ; Query CbirOr254 ; Align 485723 146 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr254 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 138 -> 213 Target range: 457186 -> 457411 139 : ThrIleGluCysArgSerIleIleLeuAspValIleValProIleAsnLysSerArgP : 158 |||:!::!! ! ! !!|||:!!||||||:!!:!:||||||:!:|||:!!||||||| ThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgP 457187 : ACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCC : 457244 159 : roArgLysValGluMetAspLeuGluLeuPheValAspGluGluGlnTyrPhePheLe : 177 || !!:!!:!! ! :!: !|||! !||||||||| !:!!:!!|||.!. !! roCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTy 457245 : CCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTA : 457301 178 : uTyrLeuAlaGlnGluLeuLeuGlyIleGlyIleSerAlaTrpSerLeuValThrThr : 196 ! !:!!|||!!. :!! ! !!:!! !|||:!!||| !!!|||..!.!!!.! rIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsn 457302 : TATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAAC : 457358 197 : GlyThrPheLeuIleThrIleValLysHisLeuCysAlaThrTyrLysIle : 213 ! !:!!!!.|||||||||! !||| !|||:!!|||!.! !!:!|||:!! GluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457359 : GAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr254 138 213 . KQ414815.1 457186 457411 + 132 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457187 457411 132 + . gene_id 2 ; sequence CbirOr254 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457187 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457187 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457187 457411 132 + . alignment_id 2 ; Query CbirOr254 ; Align 457187 139 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr256INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 254 -> 312 Target range: 469214 -> 469465 255 : GluTyrAsnThrLeuTrpTyrValAlaProLeuProIleLysLysLeuPheLeu<->I : 273 ..!||||||!:!|||||||||:!!|||||| !|||:!!!:!||||||.!.||| ! ArgTyrAsnSerLeuTrpTyrIleAlaProThrProValArgLysLeuLeuLeuThrM 469215 : AGATACAATAGTCTATGGTATATAGCACCAACGCCTGTAAGGAAATTACTATTAACCA : 469272 274 : leMetGlnLysSerIleLysSerHisLysLeu<->ValIleGlyGlyLeuPheValPr : 291 !:|||! !:!!!:!:!!!:!..!!.! !!! :!!!!:|||||||||!:!:!! ! etMetLeuGlnAsnValArgGlnArgValPheLysLeuMetGlyGlyLeuTyrIleTh 469273 : TGATGCTGCAAAATGTAAGACAGCGCGTTTTCAAGTTAATGGGAGGATTGTATATAAC : 469329 292 : oSerMetGluGlyPheThrThr >>>> Target Intron 1 >>>> LeuValT : 301 !!:!!!:|||||||||:!!! ! 71 bp :!!:!! rAsnIleGluGlyPheSerMet++ ++IleLeuA 469330 : TAATATCGAAGGTTTTTCCATGgt.........................agATCTTGC : 469430 302 : hrThrAlaIleSerTyrPheSerValMetTyrAla : 312 !|||..!||||||||||||! ! !!||||||:!! rgThrCysIleSerTyrPheMetPheMetTyrSer 469431 : GCACATGCATCTCTTACTTCATGTTCATGTACTCT : 469465 vulgar: CbirOr256INT 254 312 . KQ414815.1 469214 469465 + 118 M 18 54 G 0 3 M 11 33 G 0 3 M 15 45 5 0 2 I 0 67 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 469215 469465 118 + . gene_id 1 ; sequence CbirOr256INT ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 469215 469352 . + . KQ414815.1 exonerate:protein2genome:local exon 469215 469352 . + . insertions 6 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 469353 469354 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 469353 469423 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 469422 469423 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 469424 469465 . + . KQ414815.1 exonerate:protein2genome:local exon 469424 469465 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 469215 469465 118 + . alignment_id 1 ; Query CbirOr256INT ; Align 469215 255 54 ; Align 469272 273 33 ; Align 469308 284 45 ; Align 469424 299 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr256INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 252 -> 302 Target range: 472695 -> 472848 253 : ThrMetGluTyrAsnThrLeuTrpTyrValAlaProLeuProIleLysLysLeuPhe< : 272 :!!:!:..!||||||:!! !|||||| !:!!||||||||||||:!!||||||.!. SerLeuArgTyrAsnSerGluTrpTyrCysSerProLeuProIleGlnLysLeuLeuH 472696 : TCTCTCAGGTATAATTCTGAATGGTATTGCTCGCCGTTGCCAATACAAAAATTGCTAC : 472753 273 : ->LeuIleMetGlnLysSerIleLysSerHisLysLeuValIleGlyGlyLeuPheVa : 290 !!!||||||||| !!!!|||!!. ::: ... ::: ||| !||||| isPheIleMetGlnGlyArgIleAsnLeuAsnIlePhePheMetTyrGlyThrPheVa 472754 : ATTTTATCATGCAGGGAAGGATAAATctgaacatattttttatgtacGGTACATTCGT : 472810 291 : lProSerMetGluGlyPheThrThrLeuValThrThr : 302 ||||||||||||||||||| !.!!:!! !!.!||| lProSerMetGluGlyPheGlyAlaValArgAsnThr 472811 : ACCTTCGATGGAAGGTTTTGGCGCGGTAAGGAATACG : 472848 vulgar: CbirOr256INT 252 302 . KQ414815.1 472695 472848 + 103 M 19 57 G 0 3 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 472696 472848 103 + . gene_id 2 ; sequence CbirOr256INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 472696 472848 . + . KQ414815.1 exonerate:protein2genome:local exon 472696 472848 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 472696 472848 103 + . alignment_id 2 ; Query CbirOr256INT ; Align 472696 253 57 ; Align 472756 272 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr253 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 127 -> 213 Target range: 464579 -> 464840 128 : IlePheValIleLeuValThrThrIlePheValLeuPheGluCysSerProPheIleL : 147 :!:! ! !!|||! !|||! ! !.!!.!! !|||.!!||| ! !||| !|||| ValCysPheIleProValIleLeuPheIleCysLeuLeuGluValLeuProAspIleL 464580 : GTGTGCTTCATTCCCGTTATACTGTTCATCTGTTTACTCGAAGTATTGCCAGATATTC : 464637 148 : euAspValIleAlaProLeuAsnLysSerArgSerArgLysLeuGluLeuAspIleGl : 166 ||||||||:!!||||||||||||:!!|||||||||!.!:!!! ! !:!! ! || euAspValValAlaProLeuAsnGluSerArgSerHisGlnTyrLeuIleThrAlaGl 464638 : TCGACGTGGTTGCGCCCCTCAATGAATCTCGTTCTCATCAATACTTAATTACCGCGGA : 464694 167 : uLeuPheIle<->AspGluAspGlnTyrPheValLeuTyrLeuAlaGlnGluIleLeu : 184 |!!!|||||| |||......! ! !!!:!:!!:!! !! !!.! ! !:!! uPhePheIleThrAspSerSerProAsnTyrIleValThrCysValGlyThrAspIle 464695 : ATTTTTCATCACTGATAGTTCGCCGAATTATATCGTAACTTGTGTTGGTACGGATATT : 464751 185 : GlySerAsnValCysIleTrpSerIleIleThrThrGlyThrPheLeuAlaThrIleL : 204 ! !! !:!! ! :!! !!!!||||||.!!:!!! !|||||| ! ! !:!:| ThrLeuIleMetGlyValThrThrIleIleAlaSerGluThrPheThrPheLeuLeuL 464752 : ACTCTTATCATGGGAGTCACGACAATAATTGCCTCCGAAACGTTCACTTTTTTGTTGC : 464811 205 : euLysHisLeuCysAlaThrTyrLysIle : 213 ||:!!|||:!!||||||! !!:!|||||| euGlnHisIleCysAlaMetPheLysIle 464812 : TGCAACATATCTGCGCAATGTTCAAAATC : 464840 vulgar: CbirOr253 127 213 . KQ414815.1 464579 464840 + 113 M 42 126 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464580 464840 113 + . gene_id 1 ; sequence CbirOr253 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464580 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464580 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464580 464840 113 + . alignment_id 1 ; Query CbirOr253 ; Align 464580 128 126 ; Align 464709 170 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr253 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 135 -> 213 Target range: 457177 -> 457411 136 : IlePheValLeuPheGluCysSerProPheIleLeuAspValIleAlaProLeuAsnL : 155 :!!.!!..! !!!.:!! !! !|||.!.:!!||||||:!!:!:!.!|||||||||: ValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnG 457178 : GTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACG : 457235 156 : ysSerArgSerArgLysLeuGluLeuAspIleGluLeuPheIleAspGluAspGlnTy : 174 !!|||||| !! !!:!!||| ! ||| |||! !|||:!!||| ! ! :!!|| luSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTy 457236 : AATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTA : 457292 175 : rPheValLeuTyrLeuAlaGlnGluIleLeuGlySerAsnValCysIleTrpSerIle : 193 |.!. !! ! !:!!|||!!. ||| ! !! ! :!!... ! !!!:!! rMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeu 457293 : TATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTA : 457349 194 : IleThrThrGlyThrPheLeuAlaThrIleLeuLysHisLeuCysAlaThrTyrLysI : 213 ! !.!!!.!! !:!!!!.||| !|||! !:!! !|||:!!|||!.! !!:!|||: ThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysL 457350 : ACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGC : 457409 214 : le : 213 !! eu 457410 : TT : 457411 vulgar: CbirOr253 135 213 . KQ414815.1 457177 457411 + 103 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457178 457411 103 + . gene_id 2 ; sequence CbirOr253 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457178 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457178 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457178 457411 103 + . alignment_id 2 ; Query CbirOr253 ; Align 457178 136 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr253 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 135 -> 213 Target range: 482001 -> 482235 136 : IlePheValLeuPheGluCysSerProPheIleLeuAspValIleAlaProLeuAsnL : 155 |||.!.:!!|||! !.!. ||| !|||:!!||||||||||||!.!|||||||||: IleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValProLeuAsnG 482002 : ATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTCCTCTAAACG : 482059 156 : ysSerArgSerArgLysLeuGluLeuAspIleGluLeuPheIleAspGluAspGlnTy : 174 !!!!!|||!!!!.!:!!!!! !:!!...!!:|||! !|||||||||:!!.!.:!!|| luThrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGlnGlnLysTy 482060 : AGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCAGCAGAAATA : 482116 175 : rPheValLeuTyrLeuAlaGlnGluIleLeuGlySerAsnValCysIleTrpSerIle : 193 |! :!!!!! ! ! !!!.:!! !!!..!! ! !||| ! ! !! !||| rSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAlaThrIleIle 482117 : TTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCAACGATCATT : 482173 194 : IleThrThrGlyThrPheLeuAlaThrIleLeuLysHisLeuCysAlaThrTyrLysI : 213 :!! !! !! !|||!!.:!!!.!! ! |||:!!||| !...::! !!:!! : ValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerLeuPheThrL 482174 : GTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCTTGTTCACCC : 482233 214 : le : 213 !! eu 482234 : TT : 482235 vulgar: CbirOr253 135 213 . KQ414815.1 482001 482235 + 103 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482002 482235 103 + . gene_id 3 ; sequence CbirOr253 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482002 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 482002 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482002 482235 103 + . alignment_id 3 ; Query CbirOr253 ; Align 482002 136 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr249 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 121 -> 214 Target range: 464561 -> 464840 122 : PheThrLeuSerLeuCysIleLeuPheLeuIleGlyAlaSerLeuThrThrIleMetG : 141 !:! !|||!:!:!! :!:! !|||:!! !! ! ! !!!!! ! !:!!:!:| TyrPheLeuAsnIleProValCysPheIleProValIleLeuPheIleCysLeuLeuG 464562 : TACTTCCTGAATATTCCAGTGTGCTTCATTCCCGTTATACTGTTCATCTGTTTACTCG : 464619 142 : luPheLysProIleIleLeuAspIleIleAlaProMetAsnGluSerArgProArgLy : 160 || ! !||| !|||||||||:!::!!||||||:!:|||||||||||| !!!.!:! luValLeuProAspIleLeuAspValValAlaProLeuAsnGluSerArgSerHisGl 464620 : AAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATGAATCTCGTTCTCATCA : 464676 161 : sLeuGluIleAspIleGluLeuPheValPheAsnGluGluGlnTyrPhePhePheLeu : 179 !! ! !||| ! |||!!!|||:!! !:!!.....!! ! !!!:!.!! ! ! nTyrLeuIleThrAlaGluPhePheIleThrAspSerSerProAsnTyrIleValThr 464677 : ATACTTAATTACCGCGGAATTTTTCATCACTGATAGTTCGCCGAATTATATCGTAACT : 464733 180 : LeuValLeuGluGlyValAlaAlaGlyIleGlyLeuTrpSerLeuLeuThrIleLeuT : 199 ! !||| ! !! !:!!.!! ! !!!:|||:!! !!!!:!!:!!.!! ! !| CysValGlyThrAspIleThrLeuIleMetGlyValThrThrIleIleAlaSerGluT 464734 : TGTGTTGGTACGGATATTACTCTTATCATGGGAGTCACGACAATAATTGCCTCCGAAA : 464793 200 : hrPheIleThrThrValThrLysHisSerCysAlaThrTyrLysIle : 214 |||||! ! ! !:!! !:!!|||! !||||||! !!:!|||||| hrPheThrPheLeuLeuLeuGlnHisIleCysAlaMetPheLysIle 464794 : CGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAATGTTCAAAATC : 464840 vulgar: CbirOr249 121 214 . KQ414815.1 464561 464840 + 115 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464562 464840 115 + . gene_id 1 ; sequence CbirOr249 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464562 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464562 464840 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464562 464840 115 + . alignment_id 1 ; Query CbirOr249 ; Align 464562 122 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr260CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 142 -> 213 Target range: 485713 -> 485926 143 : ArgSerMetIleLeuAspValIleIleProValAsnGluSerArgProArgLysIleG : 162 !.!!:!! |||||||||:!!:!:||||||:!!||| ! !!!|||||||||! !||| AsnAsnSerIleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleP 485714 : AACAACAGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTC : 485771 163 : luMetAspPheGluLeuPheValAspGlnGluGlnTyrPheValLeuTyrLeuValGl : 181 !!::!!! |||! !||||||||||||:!!:!!|||||| !! ! ! !!.!!! roIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHi 485772 : CTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACA : 485828 182 : nGluIleValGlyMetGlyIleGlyAlaTrpSerLeuLeuThrThrGlyThrPheLeu : 200 .! :!!:!! !:!: !||||||||| !||||||!:!||| ...::: sValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIle 485829 : TGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaatt : 485885 201 : ThrThrValMetLysHisPheCysAlaThrTyrLysIle : 213 .!!:!!!!::!!||| !|||!.! !|||! !||| MetAlaIleIleGlnHisThrCysGlyLeuTyrThrIle 485886 : atggCGATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr260CTE 142 213 . KQ414815.1 485713 485926 + 134 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485714 485926 134 + . gene_id 1 ; sequence CbirOr260CTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485714 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485714 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485714 485926 134 + . alignment_id 1 ; Query CbirOr260CTE ; Align 485714 143 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr260CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 133 -> 213 Target range: 457171 -> 457411 134 : AlaIleSerPheValThrLeuGluCysArgSerMetIleLeuAspValIleIleProV : 153 |||:!: !.!!..!||||||:!! ! ! !!!!::!!||||||:!!:!::!!|||: AlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProL 457172 : GCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCAT : 457229 154 : alAsnGluSerArgProArgLysIleGluMetAspPheGluLeuPheValAspGlnGl : 172 !!||||||||||||||| !!:!!:!! ! :!: |||! !|||||||||..!:! euAsnGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLy 457230 : TGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAA : 457286 173 : uGlnTyrPheValLeuTyrLeuValGlnGluIleValGlyMetGlyIleGlyAlaTrp : 191 !:!!|||.!. !! ! !:!!!.!!!. |||..! !!:!: !|||!.!||| sLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThr 457287 : AAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACC : 457343 192 : SerLeuLeuThrThrGlyThrPheLeuThrThrValMetLysHisPheCysAlaThrT : 211 !!!||| !.!!!.!! !:!!!!.|||! !||| !:!: !||| !!|||!.! !! ThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuP 457344 : ACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGT : 457403 212 : yrLysIle : 213 :!|||:!! heLysLeu 457404 : TCAAGCTT : 457411 vulgar: CbirOr260CTE 133 213 . KQ414815.1 457171 457411 + 124 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457172 457411 124 + . gene_id 2 ; sequence CbirOr260CTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457172 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457172 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457172 457411 124 + . alignment_id 2 ; Query CbirOr260CTE ; Align 457172 134 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr260CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 127 -> 213 Target range: 475512 -> 475770 128 : IlePheValLeuLeuThrAlaIleSerPheValThrLeuGluCysArgSerMetIleL : 147 :!!.!.|||! !! !||| !.!!!!!.!.:!! !||| ! ! !|||! !|||| ValLeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerSerLysIleL 475513 : GTACTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGTCTAAGATCC : 475570 148 : euAspValIleIleProValAsnGluSerArgProArgLysIleGluMetAspPheGl : 166 ||||| !:!::!!|||:!!|||||||||||||||!!! ! ! !!:: ...|| euAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleArgIleGl 475571 : TTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaataga : 475627 167 : uLeuPheValAspGlnGluGlnTyrPheValLeuTyrLeuValGlnGluIleValGly : 185 | |||:::::::!!:!!:!!|||||| !||| !:!!:!! ! :!!! !||| ! uTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrValThr 475628 : atatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGTAACG : 475684 186 : MetGlyIleGlyAlaTrpSerLeuLeuThrThrGlyThrPheLeuThrThrValMetL : 205 !!: !:!: !!.! !!!! !:!!.!!|||! !.!!.!.!!!|||! ! !:!!: IleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrpLeuG 475685 : ATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGGTTGC : 475744 206 : ysHisPheCysAlaThrTyrLysIle : 213 !!|||! ! ::: ::::::||| lnHisCysIleSerLeuPheGluIle 475745 : AACATTGCATaagtttatttgaaatt : 475770 vulgar: CbirOr260CTE 127 213 . KQ414815.1 475512 475770 + 106 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475513 475770 106 + . gene_id 3 ; sequence CbirOr260CTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475513 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475513 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475513 475770 106 + . alignment_id 3 ; Query CbirOr260CTE ; Align 475513 128 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr246NTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 18 -> 86 Target range: 485722 -> 485926 19 : IleLeuAspValIleIleProMetAsnGluSerArgProArgLysPheGluIleAspL : 38 |||||||||:!!:!:||||||:!!||| ! !!!|||||||||! !.!! |||:!!! IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 39 : euGluIlePheValAspLysGluGlnTyrPhePheLeuTyrIleMetGluGluValLe : 57 !||| !|||||||||:!!:!!:!!||||||!:!! ! ! ! .!.! ||||| erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 58 : uLeuLeuGlyIleGlyLeuCysThrValIleThrThrGlyThrPheLeuAlaThrLeu : 76 |!!!:!! !|||||| ! ..!:!!:!!!:!||| ...::: .!!:!! uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 77 : GlyGluHisCysCysAlaThrTyrArgIle : 86 !:!!||| !|||!.! !|||! !||| IleGlnHisThrCysGlyLeuTyrThrIle 485895 : ATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr246NTE 18 86 . KQ414815.1 485722 485926 + 130 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485926 130 + . gene_id 1 ; sequence CbirOr246NTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485926 130 + . alignment_id 1 ; Query CbirOr246NTE ; Align 485723 19 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr246NTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 6 -> 86 Target range: 457171 -> 457411 7 : ValPheValPheThrValIleGluCysSerProValIleLeuAspValIleIleProM : 26 !.!.!.|||.!!|||..!:!::!! !! !|||:!!:!!||||||:!!:!::!!|||: AlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProL 457172 : GCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCAT : 457229 27 : etAsnGluSerArgProArgLysPheGluIleAspLeuGluIlePheValAspLysGl : 45 !!||||||||||||||| !!:!!!!. ! :!! !||| !|||||||||! !:! euAsnGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLy 457230 : TGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAA : 457286 46 : uGlnTyrPhePheLeuTyrIleMetGluGluValLeuLeuLeuGlyIleGlyLeuCys : 64 !:!!|||.!. !! ! !||| !.!. :!! !! !||| !|||!.! ! ! sLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThr 457287 : AAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACC : 457343 65 : ThrValIleThrThrGlyThrPheLeuAlaThrLeuGlyGluHisCysCysAlaThrT : 84 |||:!!! !.!!!.!! !:!!!!.||| !||| !! ! !||| !|||!.! !! ThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuP 457344 : ACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGT : 457403 85 : yrArgIle : 86 :!!:!:!! heLysLeu 457404 : TCAAGCTT : 457411 vulgar: CbirOr246NTE 6 86 . KQ414815.1 457171 457411 + 126 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457172 457411 126 + . gene_id 2 ; sequence CbirOr246NTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457172 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457172 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457172 457411 126 + . alignment_id 2 ; Query CbirOr246NTE ; Align 457172 7 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr246NTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 1 -> 86 Target range: 475515 -> 475770 2 : IleValPheMetCysValPheValPheThrValIleGluCysSerProValIleLeuA : 21 :!:|||!:! :!!|||..!.!.! !:!!:!! ! !||| !! !||||||| LeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerSerLysIleLeuA 475516 : CTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGTCTAAGATCCTTG : 475573 22 : spValIleIleProMetAsnGluSerArgProArgLysPheGluIleAspLeuGluIl : 40 || !:!::!!|||:!!|||||||||||||||!!! !! ! !||| :::||| spSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleArgIleGluTy 475574 : ATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaatagaata : 475630 41 : ePheValAspLysGluGlnTyrPhePheLeuTyrIleMetGluGluValLeuLeuLeu : 59 |||:::::::!!:!!:!!||||||!:!||| !:!:!!: ! :!!..!:!! !:!! rPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrValThrIle 475631 : tttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGTAACGATC : 475687 60 : GlyIleGlyLeuCysThrValIleThrThrGlyThrPheLeuAlaThrLeuGlyGluH : 79 !:!: ! ! !||| !:!!.!!|||! !.!!.!.!!!.!!! !! ! !:!!| LeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrpLeuGlnH 475688 : CTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGGTTGCAAC : 475747 80 : isCysCysAlaThrTyrArgIle : 86 ||||| ::: :::...||| isCysIleSerLeuPheGluIle 475748 : ATTGCATaagtttatttgaaatt : 475770 vulgar: CbirOr246NTE 1 86 . KQ414815.1 475515 475770 + 120 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475516 475770 120 + . gene_id 3 ; sequence CbirOr246NTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475516 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475516 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475516 475770 120 + . alignment_id 3 ; Query CbirOr246NTE ; Align 475516 2 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr246NTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 6 -> 89 Target range: 464597 -> 464849 7 : ValPheValPheThrValIleGluCysSerProValIleLeuAspValIleIleProM : 26 :!!.!. !!.!! !:!!:!!||| ! !|||! !||||||||||||:!! |||: IleLeuPheIleCysLeuLeuGluValLeuProAspIleLeuAspValValAlaProL 464598 : ATACTGTTCATCTGTTTACTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCC : 464655 27 : etAsnGluSerArgProArgLysPheGluIleAspLeuGluIlePheVal<->AspLy : 44 !:|||||||||||| !!!.!:!!!:! !||| ! !|||.!!|||:!! |||!. euAsnGluSerArgSerHisGlnTyrLeuIleThrAlaGluPhePheIleThrAspSe 464656 : TCAATGAATCTCGTTCTCATCAATACTTAATTACCGCGGAATTTTTCATCACTGATAG : 464712 45 : sGluGlnTyrPhePheLeuTyrIleMetGluGluValLeuLeuLeuGlyIleGlyLeu : 63 ...!! ! !!!:!.!!:!! ! !:!:! !! !:!! !||| !!!:|||:!! rSerProAsnTyrIleValThrCysValGlyThrAspIleThrLeuIleMetGlyVal 464713 : TTCGCCGAATTATATCGTAACTTGTGTTGGTACGGATATTACTCTTATCATGGGAGTC : 464769 64 : CysThrValIleThrThrGlyThrPheLeuAlaThrLeuGlyGluHisCysCysAlaT : 83 |||:!!|||.!!:!!! !|||||| ! ! !||| !:!!||| !||||||! ThrThrIleIleAlaSerGluThrPheThrPheLeuLeuLeuGlnHisIleCysAlaM 464770 : ACGACAATAATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAA : 464829 84 : hrTyrArgIleAlaSerCys : 89 !!:!!:!|||.!!!!!||| etPheLysIleThrTrpCys 464830 : TGTTCAAAATCACATGGTGC : 464849 vulgar: CbirOr246NTE 6 89 . KQ414815.1 464597 464849 + 118 M 36 108 G 0 3 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464598 464849 118 + . gene_id 4 ; sequence CbirOr246NTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464598 464849 . + . KQ414815.1 exonerate:protein2genome:local exon 464598 464849 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464598 464849 118 + . alignment_id 4 ; Query CbirOr246NTE ; Align 464598 7 108 ; Align 464709 43 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr246NTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 10 -> 88 Target range: 471582 -> 471816 11 : ThrValIleGluCysSerProValIleLeuAspValIleIleProMetAsnGluSerA : 30 ..!:!!:!:... ||||||:!!|||||||||:!!|||||||||:!!||| !|||| ValIleLeuSerMetSerProLeuIleLeuAspIleIleIleProLeuAsnThrSerA 471583 : GTAATACTGTCCATGTCGCCTCTTATTCTCGATATTATAATACCTCTGAACACGTCAC : 471640 31 : rgProArgLysPheGluIleAspLeuGluIlePheValAspLysGluGlnTyrPhePh : 49 |||||||| ! ||| !.!! !!!!!:.!!.!! !:!!:!!|||:!!||||||! rgProArgTyrPheProPheThrPheAspPheIleProAsnGlnGluGluTyrPhe** 471641 : GTCCACGTTACTTTCCATTTACGTTCGATTTCATTCCCAATCAAGAGGAATACTTCTA : 471697 50 : eLeuTyrIleMetGluGluValLeuLeuLeuGlyIleGlyLeuCysThrValIleThr : 68 ! ! !! !!!: ...! !:!!|||! ! ! !||||||....!!:!!|||!:! *ProIleThrIlePheSerGlyIleLeuCysIleCysGlyLeuAlaAlaMetIleSer 471698 : ACCGATTACTATCTTTTCTGGCATATTGTGCATTTGTGGATTAGCAGCAATGATAAGT : 471754 69 : ThrGlyThrPheLeuAlaThrLeuGlyGluHisCysCysAlaThrTyrArgIleAlaS : 88 !:!! ! !.!.||| !! ! !! ! !||| !!!.! !|||!.!||||||! SerGluGlyLeuLeuMetMetAsnValLeuHisValArgGlyLeuTyrAsnIleAlaT 471755 : AGCGAGGGTCTGCTTATGATGAATGTTTTACACGTACGTGGATTGTATAACATCGCTA : 471814 89 : er : 88 !! hr 471815 : CG : 471816 vulgar: CbirOr246NTE 10 88 . KQ414815.1 471582 471816 + 111 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471583 471816 111 + . gene_id 5 ; sequence CbirOr246NTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471583 471816 . + . KQ414815.1 exonerate:protein2genome:local exon 471583 471816 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471583 471816 111 + . alignment_id 5 ; Query CbirOr246NTE ; Align 471583 11 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr246NTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 0 -> 86 Target range: 481977 -> 482235 1 : UnkIleValPheMetCysValPheValPheThrValIleGluCysSerProValIleL : 20 ...:!!:!!!:! ! |||!!.:!!.!.! !:!! !.!. ||| ! !!:!!| AlaLeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerPheValL 481978 : gcGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTC : 482035 21 : euAspValIleIleProMetAsnGluSerArgProArgLysPheGluIleAspLeuGl : 39 |||||||||||:!!|||:!:||||||!!!||| !!!.!:!!||| !:!!...:!!|| euAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMetGl 482036 : TAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGA : 482092 40 : uIlePheValAspLysGluGlnTyrPhePheLeuTyrIleMetGluGluValLeuLeu : 58 | !|||:!!|||:!!:!!:!!|||! .!!!!! !! .!..!.:!! !!!!! ! uTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSer 482093 : GTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCC : 482149 59 : LeuGlyIleGlyLeuCysThrValIleThrThrGlyThrPheLeuAlaThrLeuGlyG : 78 !!! !:!!! ! ! ! !:!!:!! !! !! !|||!!.:!!!.!! !! ! !| PheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuG 482150 : TTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTG : 482209 79 : luHisCysCysAlaThrTyrArgIle : 86 |||||..!...::! !!:!! !:!! luHisAlaAlaSerLeuPheThrLeu 482210 : AACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: CbirOr246NTE 0 86 . KQ414815.1 481977 482235 + 106 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481978 482235 106 + . gene_id 6 ; sequence CbirOr246NTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481978 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481978 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481978 482235 106 + . alignment_id 6 ; Query CbirOr246NTE ; Align 481978 1 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr242NI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 98 -> 166 Target range: 485722 -> 485926 99 : IleLeuAspIleIleIleProMetAsnGluSerArgProArgLysValGluValAspM : 118 ||||||||||||:!:||||||:!!||| ! !!!|||||||||! !:!! :!!:!! IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 119 : etGluIlePheValAspLysGluGlnTyrPhePheLeuTyrIleMetGluGluValLe : 137 !||| !|||||||||:!!:!!:!!||||||!:!! ! ! ! .!.! ||||| erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 138 : uLeuLeuGlyIleGlyLeuCysThrValIleThrThrGlyThrPheLeuAlaThrLeu : 156 |!!!:!! !|||||| ! ..!:!!:!!!:!||| ...::: .!!:!! uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 157 : GlyGluHisCysCysAlaThrTyrArgIle : 166 !:!!||| !|||!.! !|||! !||| IleGlnHisThrCysGlyLeuTyrThrIle 485895 : ATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr242NI 98 166 . KQ414815.1 485722 485926 + 134 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485926 134 + . gene_id 1 ; sequence CbirOr242NI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485926 134 + . alignment_id 1 ; Query CbirOr242NI ; Align 485723 99 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr242NI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 78 -> 166 Target range: 457147 -> 457411 79 : ValValThrPheValPheIleCysValPheValPheMetValIleGluCysArgProV : 98 :!!..!..!! !..!!:! ! !!!.!.!.|||.!!! ..!:!::!! ! !|||: IleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheProI 457148 : ATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGA : 457205 99 : alIleLeuAspIleIleIleProMetAsnGluSerArgProArgLysValGluValAs : 117 !!:!!|||||||||:!::!!|||:!!||||||||||||||| !!:!!:!! ! :!! leLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrLeuTh 457206 : TATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTAC : 457262 118 : pMetGluIlePheValAspLysGluGlnTyrPhePheLeuTyrIleMetGluGluVal : 136 !||| !|||||||||! !:!!:!!|||.!. !! ! !||| !.!. :!! rAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIle 457263 : AGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATC : 457319 137 : LeuLeuLeuGlyIleGlyLeuCysThrValIleThrThrGlyThrPheLeuAlaThrL : 156 !! !||| !|||!.! ! !|||:!!! !.!!!.!! !:!!!!.||| !||| ThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrA 457320 : ACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGA : 457379 157 : euGlyGluHisCysCysAlaThrTyrArgIle : 166 !! ! !||| !|||!.! !!:!!:!:!! snValLeuHisValCysGlyLeuPheLysLeu 457380 : ACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr242NI 78 166 . KQ414815.1 457147 457411 + 120 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457148 457411 120 + . gene_id 2 ; sequence CbirOr242NI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457148 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457148 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457148 457411 120 + . alignment_id 2 ; Query CbirOr242NI ; Align 457148 79 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr242NI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 67 -> 169 Target range: 464537 -> 464849 68 : SerLeuTyrArgMetPheSerGlnTyrLeuGlyValValThrPheValPheIleCysV : 87 |||:!! !:!!.!!|||!:!|||!!! ! !:!! !! ! !|||||| !| SerMetIle***LeuIleSerArgTyrPheLeuAsnIleProValCysPheIleProV 464538 : TCTATGATATAATTGATTTCACGATACTTCCTGAATATTCCAGTGTGCTTCATTCCCG : 464595 88 : alPheValPheMet<->ValIleGluCysArgProValIleLeuAspIleIleIlePr : 105 ||.!.:!!|||!!: :!!:!!||| !|||! !|||||||||:!::!! || alIleLeuPheIleCysLeuLeuGluValLeuProAspIleLeuAspValValAlaPr 464596 : TTATACTGTTCATCTGTTTACTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGCC : 464652 106 : oMetAsnGluSerArgProArgLysValGluValAspMetGluIlePheVal<->Asp : 123 |:!:|||||||||||| !!!.!:!! ! !:!! ! !|||.!!|||:!! ||| oLeuAsnGluSerArgSerHisGlnTyrLeuIleThrAlaGluPhePheIleThrAsp 464653 : CCTCAATGAATCTCGTTCTCATCAATACTTAATTACCGCGGAATTTTTCATCACTGAT : 464709 124 : LysGluGlnTyrPhePheLeuTyrIleMetGluGluValLeuLeuLeuGlyIleGlyL : 143 !....!! ! !!!:!.!!:!! ! !:!:! !! !:!! !||| !!!:|||: SerSerProAsnTyrIleValThrCysValGlyThrAspIleThrLeuIleMetGlyV 464710 : AGTTCGCCGAATTATATCGTAACTTGTGTTGGTACGGATATTACTCTTATCATGGGAG : 464769 144 : euCysThrValIleThrThrGlyThrPheLeuAlaThrLeuGlyGluHisCysCysAl : 162 !! |||:!!|||.!!:!!! !|||||| ! ! !||| !:!!||| !||||| alThrThrIleIleAlaSerGluThrPheThrPheLeuLeuLeuGlnHisIleCysAl 464770 : TCACGACAATAATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCGC : 464826 163 : aThrTyrArgIleAlaSerCys : 169 |! !!:!!:!|||.!!!!!||| aMetPheLysIleThrTrpCys 464827 : AATGTTCAAAATCACATGGTGC : 464849 vulgar: CbirOr242NI 67 169 . KQ414815.1 464537 464849 + 120 M 24 72 G 0 3 M 31 93 G 0 3 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464538 464849 120 + . gene_id 3 ; sequence CbirOr242NI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464538 464849 . + . KQ414815.1 exonerate:protein2genome:local exon 464538 464849 . + . insertions 6 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464538 464849 120 + . alignment_id 3 ; Query CbirOr242NI ; Align 464538 68 72 ; Align 464613 92 93 ; Align 464709 123 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr242NI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 78 -> 166 Target range: 475506 -> 475770 79 : ValValThrPheValPheIleCysValPheValPheMetValIleGluCysArgProV : 98 |||..!..!.!.|||!:! ! :!!|||..!.!.!!::!!:!! ! ! ! !! ValThrValLeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerSerL 475507 : gtTACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGTCTA : 475564 99 : alIleLeuAspIleIleIleProMetAsnGluSerArgProArgLysValGluValAs : 117 !||||||||| !:!::!!|||:!!|||||||||||||||!!! ! ! !::: ysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleAr 475565 : AGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacg : 475621 118 : pMetGluIlePheValAspLysGluGlnTyrPhePheLeuTyrIleMetGluGluVal : 136 :::||| |||:::::::!!:!!:!!||||||!:!||| !:!:!!: ! :!!..! gIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThr 475622 : aatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACT : 475678 137 : LeuLeuLeuGlyIleGlyLeuCysThrValIleThrThrGlyThrPheLeuAlaThrL : 156 :!! !:!! !:!: ! ! !||| !:!!.!!|||! !.!!.!.!!!.!!! !! ValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetT 475679 : GTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGT : 475738 157 : euGlyGluHisCysCysAlaThrTyrArgIle : 166 ! !:!!|||||| ::: :::...||| rpLeuGlnHisCysIleSerLeuPheGluIle 475739 : GGTTGCAACATTGCATaagtttatttgaaatt : 475770 vulgar: CbirOr242NI 78 166 . KQ414815.1 475506 475770 + 116 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475507 475770 116 + . gene_id 4 ; sequence CbirOr242NI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475507 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475507 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475507 475770 116 + . alignment_id 4 ; Query CbirOr242NI ; Align 475507 79 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr242NI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 90 -> 168 Target range: 471582 -> 471816 91 : MetValIleGluCysArgProValIleLeuAspIleIleIleProMetAsnGluSerA : 110 :!::!!:!:... !|||:!!|||||||||||||||||||||:!!||| !|||| ValIleLeuSerMetSerProLeuIleLeuAspIleIleIleProLeuAsnThrSerA 471583 : GTAATACTGTCCATGTCGCCTCTTATTCTCGATATTATAATACCTCTGAACACGTCAC : 471640 111 : rgProArgLysValGluValAspMetGluIlePheValAspLysGluGlnTyrPhePh : 129 |||||||| ! !! ! !! .!.!!:.!!.!! !:!!:!!|||:!!||||||! rgProArgTyrPheProPheThrPheAspPheIleProAsnGlnGluGluTyrPhe** 471641 : GTCCACGTTACTTTCCATTTACGTTCGATTTCATTCCCAATCAAGAGGAATACTTCTA : 471697 130 : eLeuTyrIleMetGluGluValLeuLeuLeuGlyIleGlyLeuCysThrValIleThr : 148 ! ! !! !!!: ...! !:!!|||! ! ! !||||||....!!:!!|||!:! *ProIleThrIlePheSerGlyIleLeuCysIleCysGlyLeuAlaAlaMetIleSer 471698 : ACCGATTACTATCTTTTCTGGCATATTGTGCATTTGTGGATTAGCAGCAATGATAAGT : 471754 149 : ThrGlyThrPheLeuAlaThrLeuGlyGluHisCysCysAlaThrTyrArgIleAlaS : 168 !:!! ! !.!.||| !! ! !! ! !||| !!!.! !|||!.!||||||! SerGluGlyLeuLeuMetMetAsnValLeuHisValArgGlyLeuTyrAsnIleAlaT 471755 : AGCGAGGGTCTGCTTATGATGAATGTTTTACACGTACGTGGATTGTATAACATCGCTA : 471814 169 : er : 168 !! hr 471815 : CG : 471816 vulgar: CbirOr242NI 90 168 . KQ414815.1 471582 471816 + 100 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471583 471816 100 + . gene_id 5 ; sequence CbirOr242NI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471583 471816 . + . KQ414815.1 exonerate:protein2genome:local exon 471583 471816 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471583 471816 100 + . alignment_id 5 ; Query CbirOr242NI ; Align 471583 91 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr240PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 143 -> 255 Target range: 475560 -> 476964 144 : SerIleIleLeuAspValIleIleProMetAsnGluSerArgProArgLysAlaGluA : 163 |||! ||||||||| !:!::!!|||:!!|||||||||||||||!!! !:!! !! SerLysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuI 475561 : TCTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGA : 475618 164 : rgAspLeuGluLeuPheValAspGluGlnGlnTyrPhePhePheTyrLeuLeuGluGl : 182 :::||| |||::::::||||||:!!||||||!:!.!. !:!!:!! ! :! leArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGl 475619 : tacgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCA : 475675 183 : uIleLeuGlyLeuGlyValGlyCysTrp{Se} >>>> Target Intron 1 >>> : 192 !! !:!! !:!! !:!! ! !! {!!} 990 bp nThrValThrIleLeuLeuPheGlyThr{Th}++ 475676 : GACTGTAACGATCCTTCTGTTTGGTACC{AC}gt........................ : 475709 193 : > {r}IleLeuValTrpTyrAsnThrLeuTrpTyrValAlaProLeuProIleGlnL : 210 {!} !:!! ! ! ||||||:!! !||||||..!||||||||| ! ||||||| -+{r}***IleTyrArgTyrAsnSerGluTrpTyrThrAlaProLeuSerIleGlnL 475710 : .cg{A}TGAATTTATAGATACAACTCTGAATGGTACACAGCGCCGTTATCcattcaaa : 476749 211 : ys<->LeuPheLeuIleMetGlnLysSerIleLysSerHisLysValValValGlyGl : 228 || ||||||||||||::: !::!!!!! ||| !!! !! ! !!.!! ! ysLeuLeuPheLeuIleIleLeuArgThrThrLysProProIleSerLysAlaValPh 476750 : aattattatttcttataatATTACGAACAACGAAACCACCCATTTCGAAGGCAGTGTT : 476806 229 : yLeuPheValAlaSerIleGluGlyPheSerThr >>>> Target Intron 2 > : 240 !:!!!:!..!||||||!!:|||.!!|||!!!..! 75 bp eValTyrThrAlaSerMetGluSerPheThrVal++ 476807 : CGTATATACTGCATCGATGGAAAGTTTCACGGTGgt...................... : 476844 241 : >>> LeuValThrSerAlaIleSerTyrPheThrValMetHisAlaMetArg : 255 ||||||! !|||:!!:!:|||||||||! !|||!!::!!:!!!!:!:: ++LeuValLysSerSerValSerTyrPheMetValIleTyrSerIleGln 476845 : ...agCTGGTAAAATCATCAGTGTCTTATTTCATGGTGATATACTCTATCCag : 476964 vulgar: CbirOr240PI 143 255 . KQ414815.1 475560 476964 + 143 M 48 144 S 0 2 5 0 2 I 0 986 3 0 2 S 1 1 M 18 54 G 0 3 M 29 87 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475561 476964 143 + . gene_id 1 ; sequence CbirOr240PI ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 475561 475706 . + . KQ414815.1 exonerate:protein2genome:local exon 475561 475706 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 475707 475708 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 475707 476696 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 476695 476696 . + . intron_id 0 ; splice_site "CG" KQ414815.1 exonerate:protein2genome:local cds 476697 476841 . + . KQ414815.1 exonerate:protein2genome:local exon 476697 476841 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 476842 476843 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 476842 476916 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 476915 476916 . + . intron_id 1 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 476917 476964 . + . KQ414815.1 exonerate:protein2genome:local exon 476917 476964 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475561 476964 143 + . alignment_id 1 ; Query CbirOr240PI ; Align 475561 144 144 ; Align 476698 193 54 ; Align 476755 211 87 ; Align 476917 240 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr240PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 135 -> 255 Target range: 482001 -> 483391 136 : PheLeuIleProThrGluCysArgSerIleIleLeuAspValIleIleProMetAsnG : 155 .!.||||||! ! !.!. !|||.!!:!!||||||||||||:!!|||:!:|||| IleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValProLeuAsnG 482002 : ATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTCCTCTAAACG : 482059 156 : luSerArgProArgLysAlaGluArgAspLeuGluLeuPheValAspGluGlnGlnTy : 174 ||!!!||| !!!.!:!! ! ! !...:!!|||! !|||:!!|||:!!|||:!!|| luThrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGlnGlnLysTy 482060 : AGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCAGCAGAAATA : 482116 175 : rPhePhePheTyrLeuLeuGluGluIleLeuGlyLeuGlyValGlyCysTrpSerIle : 193 |! .!!||| ! !!!!.!.:!! !!!..!!!! !|||! !... !! !||| rSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAlaThrIleIle 482117 : TTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCAACGATCATT : 482173 194 : >>>> Target Intron 1 >>>> LeuValTrpTyrAsnThrLeuTrpTyrVa : 203 1027 bp :!! ! ! |||!:!!.! !||||||! ++ +-MetAsnArgTyrSerAsnAsnTrpTyrGl 482174 : gt.........................aaATGAACAGATACAGCAATAATTGGTACGA : 483230 204 : lAlaProLeuProIleGlnLysLeuPheLeu<->IleMetGlnLysSerIleLysSer : 221 !.!! !!:!!|||:!:|||||||||.!.||| ||||||..!!:!|||||| ! ||| uThrSerIleProLeuGlnLysLeuLeuLeuIleIleMetMetArgSerIleAspSer 483231 : AACGTCCATACCCCTGCAGAAATTACTGTTGATCATCATGATGAGGAGCATCGATAGT : 483287 222 : HisLysValValValGlyGlyLeuPheValAlaSerIleGluGlyPheSerThrLeuV : 241 !!.. !! ! !! !|||!!!!:!..!|||||||||:!!||||||||||||:!! CysSerTyrAspPhePheGlyPheTyrThrAlaSerIleGlnGlyPheSerThrValH 483288 : TGCAGTTATGATTTCTTCGGTTTCTACACCGCTTCGATCCAAGGTTTCTCAACGGTAC : 483347 242 : alThrSerAlaIleSerTyrPheThrValMetHisAlaMetArg : 255 !! !! !:!! !!.! !||| !!:!!.!. ||| ||| isIleIleSerProLysSerPheProIlePheSerAlaSerArg 483348 : ATATAATTTCCCCAAAAAGTTTTCCAATCTTCTCAGCGTCACGT : 483391 vulgar: CbirOr240PI 135 255 . KQ414815.1 482001 483391 + 134 M 58 174 5 0 2 I 0 1023 3 0 2 M 20 60 G 0 3 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482002 483391 134 + . gene_id 2 ; sequence CbirOr240PI ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 482002 482175 . + . KQ414815.1 exonerate:protein2genome:local exon 482002 482175 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 482176 482177 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 482176 483202 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 483201 483202 . + . intron_id 0 ; splice_site "AA" KQ414815.1 exonerate:protein2genome:local cds 483203 483391 . + . KQ414815.1 exonerate:protein2genome:local exon 483203 483391 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482002 483391 134 + . alignment_id 2 ; Query CbirOr240PI ; Align 482002 136 174 ; Align 483203 194 60 ; Align 483266 214 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr240PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 196 -> 241 Target range: 469217 -> 469358 197 : TyrAsnThrLeuTrpTyrValAlaProLeuProIleGlnLysLeuPheLeuIleMetG : 216 ||||||!:!|||||||||:!!|||||| !|||:!!::!||||||.!.|||! !|||. TyrAsnSerLeuTrpTyrIleAlaProThrProValArgLysLeuLeuLeuThrMetM 469218 : TACAATAGTCTATGGTATATAGCACCAACGCCTGTAAGGAAATTACTATTAACCATGA : 469275 217 : lnLysSerIleLysSerHisLysVal<-><->ValValGlyGlyLeuPheValAlaSe : 233 .! !..!! ! !!!!!!.:::||| :!!:!!|||||||||!:!:!!.!!!: etLeuGlnAsnValArgGlnArgValPheLysLeuMetGlyGlyLeuTyrIleThrAs 469276 : TGCTGCAAAATGTAAGACAGCGCGTTTTCAAGTTAATGGGAGGATTGTATATAACTAA : 469332 234 : rIleGluGlyPheSerThrLeuVal : 241 !|||||||||||||||! !:!!:!! nIleGluGlyPheSerMetValIle 469333 : TATCGAAGGTTTTTCCATGGTAATC : 469358 vulgar: CbirOr240PI 196 241 . KQ414815.1 469217 469358 + 102 M 28 84 G 0 6 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 469218 469358 102 + . gene_id 3 ; sequence CbirOr240PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 469218 469358 . + . KQ414815.1 exonerate:protein2genome:local exon 469218 469358 . + . insertions 6 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 469218 469358 102 + . alignment_id 3 ; Query CbirOr240PI ; Align 469218 197 84 ; Align 469308 225 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr248CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 117 -> 212 Target range: 485641 -> 485926 118 : SerTyrIlePheThrLeuPheIleTyrIleIleSerLeuValGlyLeuPheIlePheV : 137 ||| !:!! !.! !.!!||| :!!|||! ! ! !..!|||.!!:!:.!.: SerIleLeuThrAsnSerIleIleAlaValIleIleGlyProSerLeuLeuValLeuI 485642 : AGTATTTTAACGAACAGTATTATTGCAGTAATTATCGGTCCATCGTTACTTGTGCTGA : 485699 138 : alIleIleGluCysArgProIleIleLeuAspValIleIleProMetAsnGluSerAr : 156 !!:!! ! !! !!.! !! !|||||||||:!!:!:||||||:!!||| ! !!!|| leLeuGlyIlePheAsnAsnSerIleLeuAspIleLeuIleProLeuAsnTyrThrAr 485700 : TTCTTGGTATATTTAACAACAGTATTCTGGACATTTTGATTCCTTTGAATTACACTCG : 485756 157 : gProArgLysIleGluIleAspPheGluSerPheValAspLysGlnGlnTyrPhePhe : 175 |||||||! !||| |||:!!! ||| !|||||||||:!!|||:!!||||||!:! gProArgThrIleProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyr 485757 : TCCGCGGACGATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTAC : 485813 176 : PheTyrIleMetGlnGluValLeuGlyValGlyIleGlyValCysSerIleIleThrT : 195 ! ! ! !!.! |||||| !||| !||||||!.! !:!!:!!!:!| ProIleAlaAlaHisValValLeuPheValIleIleGlyAlaIleValLeuLeuSerT 485814 : CCTATTGCAGCACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCa : 485873 196 : hrGlyThrPheLeuAlaMetValValLysHisSerCysAlaThrTyrLysIle : 212 || ...::: !:!!:!!:!!|||!!!|||!.! !|||! !||| hrGluIleLeuIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIle 485874 : ccgaaatattaattatggCGATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr248CTE 117 212 . KQ414815.1 485641 485926 + 147 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485642 485926 147 + . gene_id 1 ; sequence CbirOr248CTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485642 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485642 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485642 485926 147 + . alignment_id 1 ; Query CbirOr248CTE ; Align 485642 118 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr248CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 123 -> 212 Target range: 457144 -> 457411 124 : PheIleTyrIleIleSerLeuValGlyLeuPheIlePheValIleIleGluCysArgP : 143 .!.||| :!! !!!!! ! !||| !.!.:!!.!!..!! :!::!! ! !| MetIleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheP 457145 : ATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTC : 457202 144 : roIleIleLeuAspValIleIleProMetAsnGluSerArgProArgLysIleGluIl : 162 |||||:!!||||||:!!:!::!!|||:!!||||||||||||||| !!:!!:!! ! :! roIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrLe 457203 : CGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCT : 457259 163 : eAspPheGluSerPheValAspLysGlnGlnTyrPhePhePheTyrIleMetGlnGlu : 181 ! |||! !|||||||||! !:!!:!!|||.!. !!:! !||| !!!. uThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIle 457260 : TACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATT : 457316 182 : ValLeuGlyValGlyIleGlyValCysSerIleIleThrThrGlyThrPheLeuAlaM : 201 :!! ! !!:!! !|||!.!!.! !!!!:!!! !.!!!.!! !:!!!!.||| !! IleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleT 457317 : ATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAA : 457376 202 : etValValLysHisSerCysAlaThrTyrLysIle : 212 ! !||| !||| !|||!.! !!:!|||:!! hrAsnValLeuHisValCysGlyLeuPheLysLeu 457377 : CGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr248CTE 123 212 . KQ414815.1 457144 457411 + 127 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457145 457411 127 + . gene_id 2 ; sequence CbirOr248CTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457145 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457145 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457145 457411 127 + . alignment_id 2 ; Query CbirOr248CTE ; Align 457145 124 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr248CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 120 -> 215 Target range: 464561 -> 464849 121 : PheThrLeuPheIleTyrIleIleSerLeuValGlyLeuPheIlePheValIleIleG : 140 !:! !||| !||| :!: !! !:!! !! !:!!.!..!!.!! !:!!:!!| TyrPheLeuAsnIleProValCysPheIleProValIleLeuPheIleCysLeuLeuG 464562 : TACTTCCTGAATATTCCAGTGTGCTTCATTCCCGTTATACTGTTCATCTGTTTACTCG : 464619 141 : luCysArgProIleIleLeuAspValIleIleProMetAsnGluSerArgProArgLy : 159 || !||| !||||||||||||:!! |||:!:|||||||||||| !!!.!:! luValLeuProAspIleLeuAspValValAlaProLeuAsnGluSerArgSerHisGl 464620 : AAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATGAATCTCGTTCTCATCA : 464676 160 : sIleGluIleAspPheGluSerPheVal<->AspLysGlnGlnTyrPhePhePheTyr : 177 ! ! !||| ! |||! !|||:!! |||!....!! ! !!!:!.!! ! ! nTyrLeuIleThrAlaGluPhePheIleThrAspSerSerProAsnTyrIleValThr 464677 : ATACTTAATTACCGCGGAATTTTTCATCACTGATAGTTCGCCGAATTATATCGTAACT : 464733 178 : IleMetGlnGluValLeuGlyValGlyIleGlyValCysSerIleIleThrThrGlyT : 197 !:!: !! !:!! !:!! !!!:|||||| !!!||||||.!!:!!! !| CysValGlyThrAspIleThrLeuIleMetGlyValThrThrIleIleAlaSerGluT 464734 : TGTGTTGGTACGGATATTACTCTTATCATGGGAGTCACGACAATAATTGCCTCCGAAA : 464793 198 : hrPheLeuAlaMetValValLysHisSerCysAlaThrTyrLysIleAlaSerCys : 215 ||||| ! !:!!:!!:!!:!!|||! !||||||! !!:!||||||.!!!!!||| hrPheThrPheLeuLeuLeuGlnHisIleCysAlaMetPheLysIleThrTrpCys 464794 : CGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAATGTTCAAAATCACATGGTGC : 464849 vulgar: CbirOr248CTE 120 215 . KQ414815.1 464561 464849 + 112 M 48 144 G 0 3 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464562 464849 112 + . gene_id 3 ; sequence CbirOr248CTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464562 464849 . + . KQ414815.1 exonerate:protein2genome:local exon 464562 464849 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464562 464849 112 + . alignment_id 3 ; Query CbirOr248CTE ; Align 464562 121 144 ; Align 464709 169 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr248CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 132 -> 214 Target range: 471570 -> 471816 133 : LeuPheIlePheValIleIleGluCysArgProIleIleLeuAspValIleIleProM : 152 |||.!!! ! !||||||:!:... !|||:!!|||||||||:!!|||||||||: LeuIleThrSerValIleLeuSerMetSerProLeuIleLeuAspIleIleIleProL 471571 : CTCATTACTAGTGTAATACTGTCCATGTCGCCTCTTATTCTCGATATTATAATACCTC : 471628 153 : etAsnGluSerArgProArgLysIleGluIleAspPheGluSerPheValAspLysGl : 171 !!||| !|||||||||||| ! .!! !.!! |||!!:! !.!! !:!!:!!:! euAsnThrSerArgProArgTyrPheProPheThrPheAspPheIleProAsnGlnGl 471629 : TGAACACGTCACGTCCACGTTACTTTCCATTTACGTTCGATTTCATTCCCAATCAAGA : 471685 172 : nGlnTyrPhePhePheTyrIleMetGlnGluValLeuGlyValGlyIleGlyValCys : 190 !:!!||||||! !! !!!: ...! !:!! ! ! ! !|||:!!... uGluTyrPhe***ProIleThrIlePheSerGlyIleLeuCysIleCysGlyLeuAla 471686 : GGAATACTTCTAACCGATTACTATCTTTTCTGGCATATTGTGCATTTGTGGATTAGCA : 471742 191 : SerIleIleThrThrGlyThrPheLeuAlaMetValValLysHisSerCysAlaThrT : 210 :!!!!:|||!:!!:!! ! !.!.||| !||| !||| !||| ! !!!.! !| AlaMetIleSerSerGluGlyLeuLeuMetMetAsnValLeuHisValArgGlyLeuT 471743 : GCAATGATAAGTAGCGAGGGTCTGCTTATGATGAATGTTTTACACGTACGTGGATTGT : 471802 211 : yrLysIleAlaSer : 214 ||!!.||||||!!! yrAsnIleAlaThr 471803 : ATAACATCGCTACG : 471816 vulgar: CbirOr248CTE 132 214 . KQ414815.1 471570 471816 + 110 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471571 471816 110 + . gene_id 4 ; sequence CbirOr248CTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471571 471816 . + . KQ414815.1 exonerate:protein2genome:local exon 471571 471816 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471571 471816 110 + . alignment_id 4 ; Query CbirOr248CTE ; Align 471571 133 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr248CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 131 -> 212 Target range: 481992 -> 482235 132 : GlyLeuPheIlePheValIleIleGluCysArgProIleIleLeuAspValIleIleP : 151 ..!:!!!!.|||.!.:!!:!: !.!. ! !.!!:!!||||||||||||:!!| SerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValP 481993 : TCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTC : 482050 152 : roMetAsnGluSerArgProArgLysIleGluIleAspPheGluSerPheValAspLy : 170 ||:!:||||||!!!||| !!!.!:!!.!! !:!!....!.|||! !|||:!!|||:! roLeuAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGl 482051 : CTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCA : 482107 171 : sGlnGlnTyrPhePhePheTyrIleMetGlnGluValLeuGlyValGlyIleGlyVal : 189 !|||:!!|||! .!!||| !! .!.!!.:!! !!!!..! !! !:!!! !!.! nGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAla 482108 : GCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCA : 482164 190 : CysSerIleIleThrThrGlyThrPheLeuAlaMetValValLysHisSerCysAlaT : 209 ! !|||:!! !! !! !|||!!.:!!!.!||| !:!!:!!|||:!!...::! ThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerL 482165 : ACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCT : 482224 210 : hrTyrLysIle : 212 !!:!! :!! euPheThrLeu 482225 : TGTTCACCCTT : 482235 vulgar: CbirOr248CTE 131 212 . KQ414815.1 481992 482235 + 109 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481993 482235 109 + . gene_id 5 ; sequence CbirOr248CTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481993 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481993 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481993 482235 109 + . alignment_id 5 ; Query CbirOr248CTE ; Align 481993 132 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr248CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 132 -> 212 Target range: 475530 -> 475770 133 : LeuPheIlePheValIleIleGluCysArgProIleIleLeuAspValIleIleProM : 152 :!!|||! !.!.:!!:!::!! ! ! ! !!! ||||||||| !:!::!!|||: IlePheThrMetIleLeuLeuLeuPheSerSerLysIleLeuAspSerLeuLeuProL 475531 : ATATTCACCATGATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTACCCC : 475588 153 : etAsnGluSerArgProArgLysIleGluIleAspPheGluSerPheValAspLysGl : 171 !!|||||||||||||||!!! ! ! !||| ...||| |||:::::::!!|| euAsnGluSerArgProSerTrpSerLeuIleArgIleGluTyrPheIleAsnGluGl 475589 : TGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaatagaatatttcataaacGAACA : 475645 172 : nGlnTyrPhePhePheTyrIleMetGlnGluValLeuGlyValGlyIleGlyValCys : 190 |:!!||||||!:!.!. !:!:!!: ! :!!..!:!! !:!! !:!: !! ! ! nLysTyrPheTyrLeuSerValIleTyrGlnThrValThrIleLeuLeuPheGlyThr 475646 : GAAATACTTTTATCTGAGCGTGATCTATCAGACTGTAACGATCCTTCTGTTTGGTACC : 475702 191 : SerIleIleThrThrGlyThrPheLeuAlaMetValValLysHisSerCysAlaThrT : 210 !!! !:!!.!!|||! !.!!.!.!!!.!!||| !:!!:!!|||!!! ::: : ThrTyrValAlaThrGluAlaIlePheThrMetTrpLeuGlnHisCysIleSerLeuP 475703 : ACGTACGTAGCAACTGAAGCAATATTTACCATGTGGTTGCAACATTGCATaagtttat : 475762 211 : yrLysIle : 212 :::::||| heGluIle 475763 : ttgaaatt : 475770 vulgar: CbirOr248CTE 132 212 . KQ414815.1 475530 475770 + 105 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475531 475770 105 + . gene_id 6 ; sequence CbirOr248CTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475531 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475531 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475531 475770 105 + . alignment_id 6 ; Query CbirOr248CTE ; Align 475531 133 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr253 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 133 -> 213 Target range: 1243845 -> 1243605 134 : ThrThrIlePheValLeuPheGluCysSerProPheIleLeuAspValIleAlaPr : 152 :!!! !||||||||||||||| !! ! !||| ||||||||||||:!!:!!|| SerIleIlePheValLeuPheProLeuIleProProIleLeuAspValValSerPr 1243845 : TCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACC : 1243791 153 : oLeuAsnLysSerArgSerArgLysLeuGluLeuAspIleGluLeuPheIleAspG : 171 |||||||:!!!!!|||||||||! ! ::: :::::: .!..!!||| oLeuAsnGluThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspM 1243790 : GCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACA : 1243734 172 : luAspGlnTyrPheValLeuTyrLeuAlaGlnGluIleLeuGlySerAsnValCys : 189 :::::: ||| !.! ! !! ! !!||| !:!! ! etGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThr 1243733 : tggagaagaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACC : 1243680 190 : IleTrpSerIleIleThrThrGlyThrPheLeuAlaThrIleLeuLysHisLeuCy : 208 !!: ! !|||||||||! !! !.!!!!.! !!.!..!|||:!! ! ||| !|| MetMetValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCy 1243679 : ATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTG : 1243623 209 : sAlaThrTyrLysIle : 213 |!.! !!:! :!! sGlyLeuPheAlaVal 1243622 : TGGCTTATTCGCTGTT : 1243606 vulgar: CbirOr253 133 213 . KQ414851.1 1243845 1243605 - 103 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243845 103 - . gene_id 1 ; sequence CbirOr253 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243845 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243845 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243845 103 - . alignment_id 1 ; Query CbirOr253 ; Align 1243846 134 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr258 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 131 -> 213 Target range: 1224279 -> 1224030 132 : LeuAlaSerIleValPheLeuThrPheGluCysArgAlaValIleLeuAspIleIl : 150 :!!!.! !:!!|||!:!:!!!:!||| !! ! ! ! !:!!||||||:!!:! IleValLeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAspValVa 1224279 : ATAGTTCTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGT : 1224225 151 : eAlaProMetAsnGluCysArgProArgLysThrGluIleAspLeuGlu<->LeuP : 168 !||||||:!:|||||| !|||||||||!:! ! !:!! :!!... :!!| lAlaProLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIleP 1224224 : TGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATAT : 1224168 169 : heValAsnGluGluGlnTyrPheHisLeuTyrValIleGlnGluThrLeuGlySer : 186 ||:!!:!!||| ! :!!:!!|||:!! ! !.!!!!. ! ! !.!! ! heIleAspGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerVal 1224167 : TCATAGACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTG : 1224114 187 : PheIleAlaAsnLeuSerIleIleAlaIleGlyMetPhePheAlaIleValAlaLy : 205 .!! !..!...:!!! !|||||||||:!:! !|||!!.!:! !! !:!! ! IleSerCysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePh 1224113 : ATTTCCTGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTT : 1224057 206 : sHisLeuCysAlaThrTyrLysIle : 213 |||||||||!.! !!:! !:!: eHisLeuCysGlyLeuPheAlaVal 1224056 : TCACCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: CbirOr258 131 213 . KQ414851.1 1224279 1224030 - 106 M 35 105 G 0 3 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224279 106 - . gene_id 1 ; sequence CbirOr258 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224279 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224279 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224279 106 - . alignment_id 1 ; Query CbirOr258 ; Align 1224280 132 105 ; Align 1224172 167 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr247 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 331 -> 388 Target range: 1242802 -> 1242536 332 : SerThrTyrAsnSerLeuTrpTyrLeuAlaProLeuProIleGlnLysLeuPheLe : 350 !:!! !|||||||||:!!||||||! !.!!|||:!! !|||||||||:!!.!!! AsnArgTyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHi 1242802 : AATAGATATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCA : 1242748 351 : uIleMetGln<->ArgSerValLysSerHisLysIleValMetGlyGlyLeuPheT : 368 !|||:!:||| ||||||! !||| !! !|||:!:||| |||||||||!:! sIleValGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrG 1242747 : TATAGTACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACG : 1242691 369 : hrLeuSerIleGluGlyPheSerThr >>>> Target Intron 1 >>>> L : 377 !:!!!:!||||||..!|||.!!:!! 92 bp luMetAsnIleGluAsnPheGlySer++ ++T 1242690 : AAATGAACATTGAGAATTTTGGATCAgt.........................aga : 1242572 378 : euIleThrSerAlaValSerTyrPheThrValIle : 388 !.!!! !!!!..!:!!||||||||||||:!!:!! hrPheLysThrCysIleSerTyrPheThrMetLeu 1242571 : cTTTCAAAACCTGCATATCGTACTTTACGATGCTC : 1242537 vulgar: CbirOr247 331 388 . KQ414851.1 1242802 1242536 - 111 M 22 66 G 0 3 M 23 69 5 0 2 I 0 88 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242537 1242802 111 - . gene_id 1 ; sequence CbirOr247 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1242665 1242802 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242802 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242537 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242537 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242537 1242802 111 - . alignment_id 1 ; Query CbirOr247 ; Align 1242803 332 66 ; Align 1242734 354 69 ; Align 1242573 377 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr242NI Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 254 -> 311 Target range: 1242802 -> 1242536 255 : SerThrTyrAsnSerLeuTrpTyrValAlaProLeuProIleGlnLysLeuPheLe : 273 !:!! !|||||||||:!!|||||| !.!!|||:!! !|||||||||:!!.!!! AsnArgTyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHi 1242802 : AATAGATATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCA : 1242748 274 : uIleMetGln<->ThrAlaIleLysGlyHisLysIleValValGlyGlyLeuPheT : 291 !|||:!:||| ! !:!! !||| ! !|||:!:|||!.!|||||||||!:! sIleValGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrG 1242747 : TATAGTACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACG : 1242691 292 : hrLeuSerIleGluGlyPheSerThr >>>> Target Intron 1 >>>> L : 300 !:!!!:!||||||..!|||.!!:!! 92 bp luMetAsnIleGluAsnPheGlySer++ ++T 1242690 : AAATGAACATTGAGAATTTTGGATCAgt.........................aga : 1242572 301 : euIleThrSerAlaValSerTyrPheThrValIle : 311 !.!!! !!!!..!:!!||||||||||||:!!:!! hrPheLysThrCysIleSerTyrPheThrMetLeu 1242571 : cTTTCAAAACCTGCATATCGTACTTTACGATGCTC : 1242537 vulgar: CbirOr242NI 254 311 . KQ414851.1 1242802 1242536 - 101 M 22 66 G 0 3 M 23 69 5 0 2 I 0 88 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242537 1242802 101 - . gene_id 1 ; sequence CbirOr242NI ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1242665 1242802 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242802 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242537 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242537 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242537 1242802 101 - . alignment_id 1 ; Query CbirOr242NI ; Align 1242803 255 66 ; Align 1242734 277 69 ; Align 1242573 300 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 178 Query range: 91 -> 215 Target range: 1225862 -> 1224024 92 : LeuValAspHisPhePheIleAsnTrpAspArgLeuGluSerProGluGluTyrGl : 110 ||| ||| !.!. ! !!..||| ! ! !||||||:!! !!!:||| || LeuPheAspLeuMetValArgArgTrpLysLeuLeuGluAlaLysAspGluIleGl 1225862 : ttattcgatcTCATGGTACGAAGATGGAAACTGTTGGAAGCAAAGGACGAAATAGA : 1225808 111 : uIleValLysLysTyrThrGluAsnSerGlnArgPheSerLeuGlyTyrSer{S} : 128 ||||:!!||||||||||||...!!..!!..!|||.!!!!! ! !|||!.!{.} uIleLeuLysLysTyrThrSerLysGlyMetArgLeuArgGluLeuTyrLys{A}+ 1225807 : GATACTGAAGAAATACACCAGTAAAGGGATGAGACTTAGAGAACTGTACAAA{G}g : 1225753 129 : >>>> Target Intron 1 >>>> {er}TyrCysPheIleSerTyrAlaLeu : 136 1463 bp {.!} ! !::||| ! !:!! + ++{sp}SerLeuTrpIleValLeuLeuVal 1225752 : t.........................ag{ac}tCGTTGTGGATAGTTCTGTTAGTA : 1224267 137 : PheMetCysIleSerIleIleProGlnMetLeuAsnValIleLeuProLeuAsnGl : 155 !:!||| !!.!! !!:!:||| !! !:!:|||:!!|||:!! !||||||||||| TyrMetSerPheProLeuIleAsnProValLeuAspValValAlaProLeuAsnGl 1224266 : TATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGA : 1224210 156 : uSerArgProValValValProTyrPro<->GlyTyrTyrPheValAspGluGluG : 173 |!!!|||||| ! !:!! ! !||| .!!||| |||:!!|||||| ! | uThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleAspGluTyrG 1224209 : GACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACG : 1224153 174 : luTyrPheLeuTyrIlePheCysHisAlaValValSerGlyGluIleMetMetThr : 191 ||:!!|||! ! !:!: !! !||| ! !..!|||! ! ! !! ! luHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSerCysGlyMet 1224152 : AGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATG : 1224099 192 : GlyIleValAlaHisAspCysMetLeuLeuThrCysIleGluHisIleCysSerIl : 210 !|||:!!||| ||| :!:! !:!!||| !||| |||:!!|||.!!:! MetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCysGlyLe 1224098 : ATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTGCGGATT : 1224042 211 : ePheAlaValAlaGly : 215 :|||||||||..!||| uPheAlaValCysGly 1224041 : GTTCGCAGTGTGTGGG : 1224025 vulgar: CbirOr230 91 215 . KQ414851.1 1225862 1224024 - 178 M 36 108 S 0 1 5 0 2 I 0 1459 3 0 2 S 1 2 M 36 108 G 0 3 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1225862 178 - . gene_id 1 ; sequence CbirOr230 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1225754 1225862 . - . KQ414851.1 exonerate:protein2genome:local exon 1225754 1225862 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1225752 1225753 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1224291 1225753 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1224291 1224292 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1224025 1224290 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224290 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1225862 178 - . alignment_id 1 ; Query CbirOr230 ; Align 1225863 92 108 ; Align 1224289 129 108 ; Align 1224178 165 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 123 -> 215 Target range: 1243875 -> 1243599 124 : LeuGlyTyrSerSerTyrCysPheIleSerTyrAlaLeuPheMetCysIleSerIl : 142 :!!..! !|||.!! !! ||| !! !! !:!!|||:!:! .!! !!:! ValSerLeuSerGlyThrLeuPheTyrPheSerIleIlePheValLeuPheProLe 1243875 : GTCTCTCTTTCAGGTACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATT : 1243821 143 : eIleProGlnMetLeuAsnValIleLeuProLeuAsnGluSerArgProValValV : 161 !||||||! !!!:|||:!!|||:!!! !||||||||||||!!!||| !! !:!!! uIleProProIleLeuAspValValSerProLeuAsnGluThrArgSerArgIleG 1243820 : AATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAG : 1243764 162 : alProTyrProGlyTyrTyrPheValAspGluGluGluTyrPheLeuTyrIlePhe : 179 |||.!. !!||| |||::: ||| :::::: luValIleLysLeuGlnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuTyr 1243763 : aagtaataaaattgcaataccTGTTCGACAtggagaagaatttttattcattatac : 1243710 180 : CysHisAlaValValSerGlyGluIleMetMetThrGlyIleValAlaHisAspCy : 198 !:!!.!!! ! !!!!..! !!:! |||! !! !|||:!!.!! |||.. ValTyrThrGlyTrpCysSerPheMetThrMetMetValIleIleThrIleAspAl 1243709 : GTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGC : 1243653 199 : sMetLeuLeuThrCysIleGluHisIleCysSerIlePheAlaValAlaGly : 215 .:!:! !:!!..! !|||.!.|||! |||.!!:!!|||||||||..!||| aLeuTyrValValIleIleHisHisThrCysGlyLeuPheAlaValCysGly 1243652 : GTTATATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: CbirOr230 123 215 . KQ414851.1 1243875 1243599 - 114 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243875 114 - . gene_id 2 ; sequence CbirOr230 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243875 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243875 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243875 114 - . alignment_id 2 ; Query CbirOr230 ; Align 1243876 124 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 134 -> 215 Target range: 1234305 -> 1234059 135 : AlaLeuPheMetCysIleSerIleIleProGlnMetLeuAsnValIleLeuProLe : 153 !.!:!!|||:!! :!! !!:!!:!! !! !.!.|||:!!|||:!!|||||||| ValValPheLeuLeuValProLeuValPheProPheLeuAspValValLeuProLe 1234305 : GTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGTCGTCCTTCCGTT : 1234251 154 : uAsnGluSerArgProValValValProTyr<->ProGlyTyrTyrPheValAspG : 171 |||||||!!!|||||| ! ! ! !!:! !..!||| !:! !!|||| uAsnGluThrArgProArgGlnGlnGlyPheArgValAsnTyrLeuTyrPheAspG 1234250 : AAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTATATTTCGACG : 1234194 172 : luGluGluTyrPheLeuTyrIlePheCysHisAlaValValSerGlyGluIleMet : 189 ||! !!!:||||||!!! !:!:!:!! !!!. !!.! !.!!!.!! :!!:!: luAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaValValVal 1234193 : AAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAGTCGTTGTT : 1234140 190 : MetThrGlyIleValAlaHisAspCysMetLeuLeuThrCysIleGluHisIleCy : 208 :!:! ! !|||:!!.!! |||! :!!! !:!!! ! |||.!.||| ! ! ValMetIleIleIleThrValAspSerLeuTyrMetIleIleIleHisHisAlaSe 1234139 : GTCATGATCATAATCACCGTAGACTCGTTGTACATGATAATAATTCACCATGCCAG : 1234083 209 : sSerIlePheAlaValAlaGly : 215 !.!!!!:|||||||||..!||| rGlyMetPheAlaValCysGly 1234082 : CGGAATGTTCGCCGTGTGCGGG : 1234060 vulgar: CbirOr230 134 215 . KQ414851.1 1234305 1234059 - 105 M 29 87 G 0 3 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234305 105 - . gene_id 3 ; sequence CbirOr230 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234305 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234305 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234305 105 - . alignment_id 3 ; Query CbirOr230 ; Align 1234306 135 87 ; Align 1234216 164 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 330 -> 390 Target range: 1242796 -> 1242524 331 : TyrAspSerLeuTrpTyrLysThrProValLysSerLysAsnValLeuLeuPheVa : 349 |||:!!|||:!!||||||:!!||||||||| !! !:!!!!.:!!|||! !.!.|| TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIleVa 1242796 : TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATATAGT : 1242742 350 : lIleArgArgThrTyrGlnProIlePheLeuThrAlaGlyLysIleLeuValPheS : 368 | !! !|||:!! !:!!||| ! |||..!|||||| !:!!! !! !.!.! lGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluMetA 1242741 : ACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAATGA : 1242685 369 : erLeuGluSerPheThrThr >>>> Target Intron 1 >>>> IleLeuG : 377 :!:!!|||!:!||| !:!! 92 bp !!!!: snIleGluAsnPheGlySer++ ++ThrPheL 1242684 : ACATTGAGAATTTTGGATCAgt.........................agacTTTCA : 1242566 378 : lnThrSerMetSerTyrPheThrValLeuAlaSerLeuGlu : 390 !!|||!!!!!:||||||||||||:!!||| !|||!!!:!! ysThrCysIleSerTyrPheThrMetLeuLeuSerPheLys 1242565 : AAACCTGCATATCGTACTTTACGATGCTCTTATCATTCAAA : 1242525 vulgar: CbirOr230 330 390 . KQ414851.1 1242796 1242524 - 101 M 44 132 5 0 2 I 0 88 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242525 1242796 101 - . gene_id 4 ; sequence CbirOr230 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1242665 1242796 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242796 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242525 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242525 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242525 1242796 101 - . alignment_id 4 ; Query CbirOr230 ; Align 1242797 331 132 ; Align 1242573 375 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr252 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 129 -> 213 Target range: 1243857 -> 1243605 130 : LeuValValAlaAlaIleIlePheValIlePheGluCysSerProIleIleLeuAs : 148 ||| !! ! !:!!||||||||||||:!!||| !! ! !||| !|||||||| LeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleLeuAs 1243857 : TTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGA : 1243803 149 : pValIleAlaProMetAsnLysSerArgLeuArgLysValGluValAspPheGluL : 167 ||||:!!:!!|||:!:|||:!!!!!|||! !|||! !! ::: ...::: pValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuGlnT 1243802 : TGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgcaat : 1243746 168 : euPheValAspGlnGluGlnTyrPheValLeuTyrLeuValHisGluIleLeuGly : 185 .!. !!|||...|||::: ||| |||:!! !! ! !! yrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCys 1243745 : accTGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGCTGGTGC : 1243692 186 : AlaThrIleSerIleTrpSerIleIleThrThrAlaThrPheLeuIleThrValPh : 204 :!! !!!:!!!!!: ! !|||||||||! !! !.!!!!.! !:!:..!:!!.! SerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValValIleIl 1243691 : TCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCAT : 1243635 205 : eLysHisSerCysAlaThrTyrLysIle : 213 ! ! |||!!!|||!.! !!:! :!! eHisHisThrCysGlyLeuPheAlaVal 1243634 : TCATCACACGTGTGGCTTATTCGCTGTT : 1243606 vulgar: CbirOr252 129 213 . KQ414851.1 1243857 1243605 - 111 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243857 111 - . gene_id 1 ; sequence CbirOr252 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243857 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243857 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243857 111 - . alignment_id 1 ; Query CbirOr252 ; Align 1243858 130 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 129 -> 215 Target range: 1632 -> 1890 130 : CysPheIleSerTyrAlaLeuPheMetCysIleSerIleIleProGlnMetLeuAsnValIl : 150 ....!!:!!!!! ! !||||||:!!! ! !!:!:! !|||!!.!!:|||:!!:!!:! AlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLe 1633 : GCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTT : 1693 151 : eLeuProLeuAsnGluSerArgProValValValProTyrProGlyTyrTyrPheValAspG : 171 !|||||| !|||||||||||| !|||!.! ! !||||||!.!|||||||||..!|||| uLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspG 1694 : ACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACG : 1756 172 : luGluGluTyrPheLeuTyrIlePheCysHisAlaValValSerGlyGluIleMetMetThr : 191 ||.!.:!!||| !:!!||||||.!! ||| !!.! ! ! ! !:!::!!.!. ! luHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyr 1757 : AGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTAC : 1816 192 : GlyIleValAlaHisAspCysMetLeuLeuThrCysIleGluHisIleCysSerIlePheAl : 212 ! ! ! !!||| !||| !! ! !:!! ! !:!::!!||| !|||.!!:!:!!.|| ValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAl 1817 : GTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGC : 1879 213 : aValAlaGly : 215 ||||:!!||| aValSerGly 1880 : CGTGTCCGGg : 1890 vulgar: CbirOr230 129 215 . KQ414921.1 1632 1890 + 148 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1633 1890 148 + . gene_id 1 ; sequence CbirOr230 ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1633 1890 . + . KQ414921.1 exonerate:protein2genome:local exon 1633 1890 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1633 1890 148 + . alignment_id 1 ; Query CbirOr230 ; Align 1633 130 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 290 -> 386 Target range: 807290 -> 807578 291 : AspThrLeuAspAlaLeuLysTyrValValTyrPheAlaAlaGlnLeuIleHisLeuP : 310 |||!.!:!!! ||||||!:! ! !!||| .!.!.!.!! !||||||!!.|||! AspAsnValAlaAlaLeuArgSerPheValLeuMetValThrLeuLeuIleGlnLeuT 807291 : GACAACGTTGCAGCATTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGT : 807348 311 : heTyrLeuSerPheGluGlyGlnLysLeuIleAspHisSerValGlnMetArgGluLy : 329 :! !! !:!!!:!! !|||.!.! !||| ...!..!!!! !:!!!!: !:!! yrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluIleAlaGlnAl 807349 : ACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGC : 807405 330 : sIleTyrAspSerLeuTrpTyrLysThrProValLysSerLysAsnValLeuLeuPhe : 348 !||||||||||||||||||::: !! !! ! ! :!! !..! !||||||!!. aAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeu 807406 : CGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTG : 807462 349 : ValIleArgArgThrTyrGlnProIlePheLeuThrAlaGlyLysIleLeuValPheS : 368 :!!|||!.!||| ! !!..!||| ! !:!!||||||||||||.!!:!! !.!.! IleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheValProMetA 807463 : ATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGA : 807522 369 : erLeuGluSerPheThrThrIleLeuGlnThrSerMetSerTyrPheThrValLeu : 386 :!||| !!!|||! ! !||||||:!!.!!||| ||||||.!.:!!|||:!! snLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSerValMet 807523 : ATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATG : 807578 vulgar: CbirOr230 290 386 . KQ414940.1 807290 807578 + 142 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807291 807578 142 + . gene_id 1 ; sequence CbirOr230 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807291 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807291 807578 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807291 807578 142 + . alignment_id 1 ; Query CbirOr230 ; Align 807291 291 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 121 -> 215 Target range: 32467 -> 32749 122 : PheSerLeuGlyTyrSerSerTyrCysPheIleSerTyrAlaLeuPheMetCysIleSer : 141 ||| ||| ! !!!!.!!!:! !:!|||.!! !! !!:! :!:..! PhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIleValGln 32468 : tttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAA : 32525 142 : IleIleProGlnMetLeuAsnValIleLeuProLeuAsnGluSerArgProValValVal : 161 .!!:!:||| ! !!::!!:!!|||||| !||||||||||||||||||! ! !|||:!! PheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHisValLeu 32526 : TTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTG : 32585 162 : ProTyrProGlyTyrTyrPheValAspGluGluGluTyrPheLeuTyrIlePheCysHis : 181 |||||| !!||| ! ||||||||||||:::::::::||||||||| ||| ! ||| ProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHis 32586 : CCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCAC : 32645 182 : AlaValValSerGlyGluIleMetMetThrGlyIleValAlaHisAspCysMetLeuLeu : 201 !:!!! !!!!! ! :!! :!!|||! ! !..!||| ||| :::...::: MetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIle 32646 : ATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcata : 32705 202 : ThrCysIleGluHisIleCysSerIlePheAlaValAlaGly : 215 ::: |||:!!|||:!!! !||| !:!! !||| PhePheMetPheHisValCysAlaLysPheAsnIleLeuGly 32706 : ttcttcatGTTCCACGTTTGCGCCAAATTCAATATTCTCGGG : 32749 vulgar: CbirOr230 121 215 . KQ415081.1 32467 32749 + 158 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32468 32749 158 + . gene_id 1 ; sequence CbirOr230 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32468 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32468 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32468 32749 158 + . alignment_id 1 ; Query CbirOr230 ; Align 32468 122 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr255PSE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 129 -> 214 Target range: 32491 -> 32746 130 : IleValLeuGlyAlaPheGlyPheIleIleIleGluCysArgSerIleIleLeuAspVal : 149 :!! !:!!||| !|||..!!:! !|||:!::!!! !! ! !! !|||:!!|||||| ValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspVal 32492 : GTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTG : 32549 150 : IleAlaProMetAsnGluSerArgProArgLysLeuGluLeuAspLeuGluLeuPheVal : 169 |||||||||:!:||||||||||||! !!.! !||| !! !! ! !|||! !|||||| IleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPheVal 32550 : ATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTC : 32609 170 : AsnGluGluGlnTyrPheLeuLeuTyrPheLeuGlnGluIleIleGlyMetGlyIleGly : 189 :!!:::::::::||||||||| ! ! |||!!. !:!! !:!: !:!!||| AspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGly 32610 : GACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGT : 32669 190 : IleTrpSerIleIleThrThrGlyThrPheLeuIleThrIleAlaLysHisSerCysAla : 209 :!: ! ! !! .!!... :::......||| ... ! ||| !|||||| LeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAla 32670 : CTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCC : 32729 210 : SerTyrLysIleVal : 214 !.!!:!!!.|||:!! LysPheAsnIleLeu 32730 : AAATTCAATATTCTC : 32746 vulgar: CbirOr255PSE 129 214 . KQ415081.1 32491 32746 + 122 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32492 32746 122 + . gene_id 1 ; sequence CbirOr255PSE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32492 32746 . + . KQ415081.1 exonerate:protein2genome:local exon 32492 32746 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32492 32746 122 + . alignment_id 1 ; Query CbirOr255PSE ; Align 32492 130 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr252 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 128 -> 213 Target range: 32488 -> 32743 129 : PheLeuValValAlaAlaIleIlePheValIlePheGluCysSerProIleIleLeuAsp : 148 |||:!! !:!!!.! !.!! !!:!!.!||| ! :!!! ! !||| !|||:!!||| PheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAsp 32489 : TTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGAC : 32546 149 : ValIleAlaProMetAsnLysSerArgLeuArgLysValGluValAspPheGluLeuPhe : 168 ||||||||||||:!:|||:!!||||||! !!.! !:!! ! !! ! !|||! !||| ValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPhe 32547 : GTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTC : 32606 169 : ValAspGlnGluGlnTyrPheValLeuTyrLeuValHisGluIleLeuGlyAlaThrIle : 188 |||||||||::::::||||||::: ! ! !:!!||| !:!! ! !!.!|||:!! ValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeu 32607 : GTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTT : 32666 189 : SerIleTrpSerIleIleThrThrAlaThrPheLeuIleThrValPheLysHisSerCys : 208 .!!:!: ! ! !! .!!... :::......||| ... ||| !||| GlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCys 32667 : GGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGC : 32726 209 : AlaThrTyrLysIle : 213 |||! !!:!!!.||| AlaLysPheAsnIle 32727 : GCCAAATTCAATATT : 32743 vulgar: CbirOr252 128 213 . KQ415081.1 32488 32743 + 119 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32489 32743 119 + . gene_id 1 ; sequence CbirOr252 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32489 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32489 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32489 32743 119 + . alignment_id 1 ; Query CbirOr252 ; Align 32489 129 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr260CTE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 128 -> 213 Target range: 32488 -> 32743 129 : PheValLeuLeuThrAlaIleSerPheValThrLeuGluCysArgSerMetIleLeuAsp : 148 ||||||! !:!! ! !.!!|||!:!!.!! !:!!:!!! !! ! !! |||:!!||| PheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAsp 32489 : TTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGAC : 32546 149 : ValIleIleProValAsnGluSerArgProArgLysIleGluMetAspPheGluLeuPhe : 168 |||||| |||:!!||||||||||||! !!.! !:!: ! ! ! !|||! !||| ValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPhe 32547 : GTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTC : 32606 169 : ValAspGlnGluGlnTyrPheValLeuTyrLeuValGlnGluIleValGlyMetGlyIle : 188 |||||||||::::::||||||::: ! ! !:!!!!. !:!!! ! !:!: !:!! ValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeu 32607 : GTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTT : 32666 189 : GlyAlaTrpSerLeuLeuThrThrGlyThrPheLeuThrThrValMetLysHisPheCys : 208 ||| ! ! ! ! !.!!... :::...... ||| ||| !!||| GlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCys 32667 : GGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGC : 32726 209 : AlaThrTyrLysIle : 213 |||! !!:!!!.||| AlaLysPheAsnIle 32727 : GCCAAATTCAATATT : 32743 vulgar: CbirOr260CTE 128 213 . KQ415081.1 32488 32743 + 106 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32489 32743 106 + . gene_id 1 ; sequence CbirOr260CTE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32489 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32489 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32489 32743 106 + . alignment_id 1 ; Query CbirOr260CTE ; Align 32489 129 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr259 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 128 -> 213 Target range: 32488 -> 32743 129 : PheValIleLeuSerAlaIleIlePheThrIlePheGluCysArgSerIleIleLeuAsp : 148 |||||| !:!!.!! !.!! !!:!.!!||| ! :!!! !! ! !! !|||:!!||| PheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAsp 32489 : TTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGAC : 32546 149 : ValIleAlaProIleAsnGluSerArgProArgLysIleGluMetAspPheGluLeuPhe : 168 ||||||||||||:!!||||||||||||! !!.! !:!: ! ! ! !|||! !||| ValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPhe 32547 : GTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTC : 32606 169 : ValAspGlnGluGlnTyrPheValLeuTyrLeuValGlnGluIleLeuGlyGlyPheIle : 188 |||||||||::::::||||||::: ! ! !:!!!!. !:!! ! !! ! !:!! ValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeu 32607 : GTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTT : 32666 189 : GlyGlyTrpAlaIleLeuThrAlaAlaThrPheLeuThrThrValMetLysHisPheCys : 208 ||| ! !!.! ! !.!!!.. :::...... ||| ||| !!||| GlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCys 32667 : GGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGC : 32726 209 : AlaThrTyrLysIle : 213 |||! !!:!!!.||| AlaLysPheAsnIle 32727 : GCCAAATTCAATATT : 32743 vulgar: CbirOr259 128 213 . KQ415081.1 32488 32743 + 104 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32489 32743 104 + . gene_id 1 ; sequence CbirOr259 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32489 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32489 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32489 32743 104 + . alignment_id 1 ; Query CbirOr259 ; Align 32489 129 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr248CTE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 130 -> 212 Target range: 32497 -> 32743 131 : ValGlyLeuPheIlePheValIleIleGluCysArgProIleIleLeuAspValIleIle : 150 :!!|||:!!||| !!:!!.!|||:!::!!! !! !||| !|||:!!||||||||| IleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAla 32498 : ATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCG : 32555 151 : ProMetAsnGluSerArgProArgLysIleGluIleAspPheGluSerPheValAspLys : 170 |||:!:||||||||||||! !!.! !:!: ! !! ! !|||! !|||||||||::: ProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGln 32556 : CCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcag : 32615 171 : GlnGlnTyrPhePhePheTyrIleMetGlnGluValLeuGlyValGlyIleGlyValCys : 190 |||:::||||||... ! :!!!!. !:!! ! !||| !:!!|||:!! GlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThr 32616 : caaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACG : 32675 191 : SerIleIleThrThrGlyThrPheLeuAlaMetValValLysHisSerCysAlaThrTyr : 210 ! !! .!!... :::...... ... ::! ||| !||||||! !!:! ValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPhe 32676 : GTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTC : 32735 211 : LysIle : 212 !!.||| AsnIle 32736 : AATATT : 32743 vulgar: CbirOr248CTE 130 212 . KQ415081.1 32497 32743 + 123 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32498 32743 123 + . gene_id 1 ; sequence CbirOr248CTE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32498 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32498 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32498 32743 123 + . alignment_id 1 ; Query CbirOr248CTE ; Align 32498 131 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr246NTE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 1 -> 86 Target range: 32488 -> 32743 2 : IleValPheMetCysValPheValPheThrValIleGluCysSerProValIleLeuAsp : 21 .!!|||!:!!!: ! :!!||| !!:!.!!:!!:!::!!! ! !||| !|||:!!||| PheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAsp 32489 : TTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGAC : 32546 22 : ValIleIleProMetAsnGluSerArgProArgLysPheGluIleAspLeuGluIlePhe : 41 |||||| |||:!:||||||||||||! !!.! !.!. ! !! ! !||| !||| ValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPhe 32547 : GTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTC : 32606 42 : ValAspLysGluGlnTyrPhePheLeuTyrIleMetGluGluValLeuLeuLeuGlyIle : 61 ||||||:::::::::||||||... ! ! :!!.!. !:!! ! !:!! !:!! ValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeu 32607 : GTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTT : 32666 62 : GlyLeuCysThrValIleThrThrGlyThrPheLeuAlaThrLeuGlyGluHisCysCys : 81 |||||| ..!!.!! .!!... :::...... ... ! ||| !||| GlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCys 32667 : GGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGC : 32726 82 : AlaThrTyrArgIle : 86 |||! !!:!!.!||| AlaLysPheAsnIle 32727 : GCCAAATTCAATATT : 32743 vulgar: CbirOr246NTE 1 86 . KQ415081.1 32488 32743 + 115 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32489 32743 115 + . gene_id 1 ; sequence CbirOr246NTE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32489 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32489 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32489 32743 115 + . alignment_id 1 ; Query CbirOr246NTE ; Align 32489 2 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr242NI Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 75 -> 166 Target range: 32470 -> 32743 76 : TyrLeuGlyValValThrPheValPheIleCysValPheValPheMetValIleGluCys : 95 :::||| !..!..! !||||||!:!||| ! :!!||| !!:! :!!:!::!!! ! PheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIleValGlnPhe 32471 : ttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTC : 32528 96 : ArgProValIleLeuAspIleIleIleProMetAsnGluSerArgProArgLysValGlu : 115 ! !||| !|||:!!|||:!:||| |||:!:||||||||||||! !!.! !:!! ! LeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHisValLeuPro 32529 : CTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCG : 32588 116 : ValAspMetGluIlePheValAspLysGluGlnTyrPhePheLeuTyrIleMetGluGlu : 135 !! ! ||| !|||||||||:::::::::||||||... ! ! :!!.!. ! TyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMet 32589 : TACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATG : 32648 136 : ValLeuLeuLeuGlyIleGlyLeuCysThrValIleThrThrGlyThrPheLeuAlaThr : 155 :!! ! !:!! !:!!|||||| ..!!.!! .!!... :::...... LeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhe 32649 : CTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattc : 32708 156 : LeuGlyGluHisCysCysAlaThrTyrArgIle : 166 ... ! ||| !||||||! !!:!!.!||| PheMetPheHisValCysAlaLysPheAsnIle 32709 : ttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr242NI 75 166 . KQ415081.1 32470 32743 + 125 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32471 32743 125 + . gene_id 1 ; sequence CbirOr242NI ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32471 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32471 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32471 32743 125 + . alignment_id 1 ; Query CbirOr242NI ; Align 32471 76 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 129 -> 215 Target range: 208 -> 466 130 : CysPheIleSerTyrAlaLeuPheMetCysIleSerIleIleProGlnMetLeuAsnValIleL : 151 ....!!:!!!!! ! !||||||:!!! ! !!:!:! !|||!!.!!:|||:!!:!!:!!| AlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuL 209 : GCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTAC : 272 152 : euProLeuAsnGluSerArgProValValValProTyrProGlyTyrTyrPheValAspGluGl : 172 ||||| !|||||||||||| !|||!.! ! !||||||!.!|||||||||..!||||||.! euProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHi 273 : TACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCA : 335 173 : uGluTyrPheLeuTyrIlePheCysHisAlaValValSerGlyGluIleMetMetThrGlyIle : 193 .:!!||| !:!!||||||.!! ||| !!.! ! ! ! !:!::!!.!. !! ! ! sLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyr 336 : TAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTAC : 398 194 : ValAlaHisAspCysMetLeuLeuThrCysIleGluHisIleCysSerIlePheAlaValAlaG : 215 !!||| !||| !! ! !:!! ! !:!::!!||| !|||.!!:!:!!.||||||:!!| PheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerG 399 : TTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCG : 464 216 : ly : 215 || ly 465 : Gg : 466 vulgar: CbirOr230 129 215 . LHQN01023902.1 208 466 + 148 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 209 466 148 + . gene_id 1 ; sequence CbirOr230 ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 209 466 . + . LHQN01023902.1 exonerate:protein2genome:local exon 209 466 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 209 466 148 + . alignment_id 1 ; Query CbirOr230 ; Align 209 130 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr252 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 129 -> 181 Target range: 8895 -> 9051 130 : LeuValValAlaAlaIleIlePheValIlePheGluCysSerProIleIleLeuAspValIl : 150 ||| !!:!! !!||| !||||||:!! ! ! ! !:!!|||||||||||||||:!! LeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAspIleCy 8896 : TTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTG : 8956 151 : eAlaProMetAsnLysSerArgLeuArgLysValGluValAspPheGluLeuPheValAspG : 171 !||||||:!!||||||!!!||| !||| ! !!! ! ! ! ! !!:::!!|||! sAlaProLeuAsnLysThrArgLysArgAlaPheValTyrProAlaTyrTyrTrpMetAspP 8957 : CGCGCCACTGAACAAAACGAGAAAACGTGCGTTCGTTTATCCAGCCTATTACTGGATGGATC : 9019 172 : lnGluGlnTyrPheValLeuTyrLeuValHis : 181 |||||||||!:!:!!:!! :!!:!!||| roGluGlnTyrTyrMetIleMetIleIleHis 9020 : CTGAGCAATACTACATGATAATGATAATACAC : 9051 vulgar: CbirOr252 129 181 . LHQN01025741.1 8895 9051 + 104 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 8896 9051 104 + . gene_id 1 ; sequence CbirOr252 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 8896 9051 . + . LHQN01025741.1 exonerate:protein2genome:local exon 8896 9051 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 8896 9051 104 + . alignment_id 1 ; Query CbirOr252 ; Align 8896 130 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 134 -> 215 Target range: 4999 -> 5242 135 : AlaLeuPheMetCysIleSerIleIleProGlnMetLeuAsnValIleLeuProLeuAsnGl : 155 |||||||||||||||:!: !!.!!:!: !!! !!!:|||:!!:!!:!!:!!||||||||||| AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGl 5000 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGA : 5060 156 : uSerArgProValValValProTyrProGlyTyrTyrPheValAspGluGluGluTyrPheL : 176 |!!!||| !! !:!! !! !||||||!.!||||||||||||||||||!!::!!||| !! uThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisT 5061 : GACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATT : 5123 177 : euTyrIlePheCysHisAlaValValSerGlyGluIleMetMetThrGlyIleValAlaHis : 196 !! ||| ! ! ||| ! !:!! !! !! !!!::!:!!::!!! !.!! !||| ! yrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCys 5124 : ACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGC : 5183 197 : AspCysMetLeuLeuThrCysIleGluHisIleCysSerIlePheAlaValAlaGly : 215 |||..!! ! !:!! !..!:!::!!||| !|||.!!:!:!!.|||:!!|||||| AspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5184 : GATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5242 vulgar: CbirOr230 134 215 . LHQN01025741.1 4999 5242 + 165 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5000 5242 165 + . gene_id 1 ; sequence CbirOr230 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5000 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5000 5242 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5000 5242 165 + . alignment_id 1 ; Query CbirOr230 ; Align 5000 135 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 129 -> 215 Target range: 11477 -> 11735 130 : CysPheIleSerTyrAlaLeuPheMetCysIleSerIleIleProGlnMetLeuAsnVal : 149 ...!:!|||!!!! !||||||!!: :!: !! ! !!!:!:!!:!!||| ! AlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArgLeuValAsnSer 11478 : GCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGATTGGTGAACTCG : 11535 150 : IleLeuProLeuAsnGluSerArgProValValValProTyrProGlyTyrTyrPheVal : 169 ! ! !!! !||| !!!!! ! !:!! ! !! ! |||||||||||||||||| TyrLysThrGlnAsnIleThrProSerLeuGlnPheValIleProGlyTyrTyrPheVal 11536 : TACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTC : 11595 170 : AspGluGluGluTyrPheLeuTyrIlePheCysHisAlaValValSerGlyGluIleMet : 189 ||||||! !||||||!:!! !||||||.!. !|||!.!..! !!!!! ! !|||:!: AspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeuIleVal 11596 : GACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTGATTGTA : 11655 190 : MetThrGlyIleValAlaHisAspCysMetLeuLeuThrCysIleGluHisIleCysSer : 209 :!!..!! ! ! !||| !||| !! ! !:!!..! :!::!!|||! !|||.!! ValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGly 11656 : GTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGA : 11715 210 : IlePheAlaValAlaGly : 215 :!:||||||||||||||| LeuPheAlaValAlaGly 11716 : CTGTTCGCCGTGGCCGGG : 11735 vulgar: CbirOr230 129 215 . LHQN01025741.1 11477 11735 + 130 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11478 11735 130 + . gene_id 2 ; sequence CbirOr230 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11478 11735 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11478 11735 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11478 11735 130 + . alignment_id 2 ; Query CbirOr230 ; Align 11478 130 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 270 -> 386 Target range: 12074 -> 13053 271 : ValAlaIleAsnAlaLeuValIleSerIleThrLeuLeuGln >>>> Target Intr : 285 :!!|||!!: !:!! !.!!||||||||||||:!!||| 81 bp LeuAlaMetValIleValCysPheSerIleThrLeuIleGln++ 12075 : TTAGCCATGGTGATTGTATGCTTCAGTATTACTCTGATCCAGgt................ : 12119 286 : on 1 >>>> IleThrGlnArgAspAlaAspThrLeuAspAlaLeuLysTyrValValT : 301 :!:!:! ! !||| !||| :!!:!! !! !!:! !! ! !! ++LeuSerThrAlaAspLeuAsp---IleAsnPheTyrArgAsnCysSerP 12120 : .........agCTGAGTACGGCGGATTTAGAT---ATAAACTTCTACAGAAACTGCAGTT : 12243 302 : yrPheAlaAlaGlnLeuIleHisLeuPheTyrLeuSerPheGluGlyGlnLysLeuIleA : 321 :!.!. !..!||||||!!:||||||||| !:!!! !.!!:!!|||||| :!!:!:| heMetLeuCysGlnLeuMetHisLeuPheValIleMetLeuGlnGlyGlnPheValLeuA 12244 : TCATGTTGTGTCAACTGATGCATCTATTTGTCATCATGCTTCAGGGACAGTTCGTGCTGG : 12303 322 : spHis{S} >>>> Target Intron 2 >>>> {er}ValGlnMetArgGluLysI : 330 || {!} 470 bp {!!}! !.!.! ..! ...! spSer{C}+- +-{ys}AspAspAsnGluThrSerA 12304 : ATTCG{T}gc.........................ac{GC}GATGATAATGAAACTTCCA : 12800 331 : leTyrAspSerLeuTrpTyrLysThrProValLysSerLysAsnValLeuLeuPheValI : 350 !|||!!:||||||||||||! !!:! !! !|||!!!:!! :!!! !:!! ! !.!: rgTyrGluSerLeuTrpTyrThrSerSerSerLysThrGlnAlaLeuTyrValValAlaL 12801 : GATACGAATCATTATGGTACACAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCGT : 12860 351 : leArgArgThrTyrGlnProIlePheLeuThrAlaGlyLysIleLeuValPheSerLeuG : 370 !!||||||!.! !|||! !! !|||||||||||| :!!:!! !.!.!:!:!!! euArgArgAsnLeuThrProThrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMetA 12861 : TACGAAGAAACCTAACACCTACCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATGG : 12920 371 : luSerPheThrThr >>>> Target Intron 3 >>>> IleLeuGlnThrSerMe : 380 !|||||| ! ! 83 bp :!::!!:!!! !|||:! laSerPheLeuGlu++ ++ValValLysMetSerVa 12921 : CAAGTTTCTTGGAGgt.........................agGTGGTAAAAATGTCCGT : 13033 381 : tSerTyrPheThrValLeu : 386 :||||||!:!||||||||| lSerTyrTyrThrValLeu 13034 : ATCCTATTATACGGTGTTG : 13053 vulgar: CbirOr230 270 386 . LHQN01025741.1 12074 13053 + 106 M 14 42 5 0 2 I 0 77 3 0 2 M 7 21 G 1 0 M 30 90 S 0 1 5 0 2 I 0 466 3 0 2 S 1 2 M 51 153 5 0 2 I 0 79 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 12075 13053 106 + . gene_id 3 ; sequence CbirOr230 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 12075 12116 . + . LHQN01025741.1 exonerate:protein2genome:local exon 12075 12116 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 12117 12118 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 12117 12197 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 12196 12197 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 12198 12309 . + . LHQN01025741.1 exonerate:protein2genome:local exon 12198 12309 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local splice5 12310 12311 . + . intron_id 2 ; splice_site "GC" LHQN01025741.1 exonerate:protein2genome:local intron 12310 12779 . + . intron_id 2 LHQN01025741.1 exonerate:protein2genome:local splice3 12778 12779 . + . intron_id 1 ; splice_site "AC" LHQN01025741.1 exonerate:protein2genome:local cds 12780 12934 . + . LHQN01025741.1 exonerate:protein2genome:local exon 12780 12934 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 12935 12936 . + . intron_id 3 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 12935 13017 . + . intron_id 3 LHQN01025741.1 exonerate:protein2genome:local splice3 13016 13017 . + . intron_id 2 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 13018 13053 . + . LHQN01025741.1 exonerate:protein2genome:local exon 13018 13053 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 12075 13053 106 + . alignment_id 3 ; Query CbirOr230 ; Align 12075 271 42 ; Align 12198 285 21 ; Align 12219 293 90 ; Align 12782 324 153 ; Align 13018 375 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 138 Query range: 129 -> 215 Target range: 1245 -> 987 130 : CysPheIleSerTyrAlaLeuPheMetCysIleSerIleIleProGlnMetLeuAsnValIl : 150 ...!:!|||!!!! !||||||!!: :!: !! ! !!!:!|||:!!||| ! AlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArgMetValAsnSerTy 1245 : GCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGAATGGTGAACTCGTA : 1185 151 : eLeuProLeuAsnGluSerArgProValValValProTyrProGlyTyrTyrPheValAspG : 171 ! ! !!! !||| !!!!! ! !:!! !||| ! |||||||||||||||||||||| rLysThrGlnAsnIleThrProSerLeuProValValValProGlyTyrTyrPheValAspG 1184 : CAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACG : 1122 172 : luGluGluTyrPheLeuTyrIlePheCysHisAlaValValSerGlyGluIleMetMetThr : 191 ||! !||||||!:!! !||||||.!. !|||!.!..! !!!!! ! !|||:!::!!..! luValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeuIleValValVal 1121 : AAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTG : 1062 192 : GlyIleValAlaHisAspCysMetLeuLeuThrCysIleGluHisIleCysSerIlePheAl : 212 ! ! ! !||| !||| !! ! !:!!..! :!::!!|||! !|||.!!:!:||||| ValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAl 1061 : GTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGC : 999 213 : aValAlaGly : 215 |||||||||| aValAlaGly 998 : CGTGGCCGGG : 988 vulgar: CbirOr230 129 215 . LHQN01027734.1 1245 987 - 138 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 988 1245 138 - . gene_id 1 ; sequence CbirOr230 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 988 1245 . - . LHQN01027734.1 exonerate:protein2genome:local exon 988 1245 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 988 1245 138 - . alignment_id 1 ; Query CbirOr230 ; Align 1246 130 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr230 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 163 Query range: 134 -> 215 Target range: 5663 -> 5420 135 : AlaLeuPheMetCysIleSerIleIleProGlnMetLeuAsnValIleLeuProLeuAsnGl : 155 |||||||||||||||:!: !!.!!:!: !!! !!!:|||:!!:!!:!!:!!||||||||||| AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGl 5663 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGA : 5603 156 : uSerArgProValValValProTyrProGlyTyrTyrPheValAspGluGluGluTyrPheL : 176 |!!!||| !! !:!! !! !||||||!.!||||||||||||||||||!!::!!||| !! uThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgT 5602 : GACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTT : 5540 177 : euTyrIlePheCysHisAlaValValSerGlyGluIleMetMetThrGlyIleValAlaHis : 196 !! ||| ! ! ||| ! !:!! !! !! !!!::!:!!::!!! !.!! !||| ! yrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCys 5539 : ACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGC : 5480 197 : AspCysMetLeuLeuThrCysIleGluHisIleCysSerIlePheAlaValAlaGly : 215 |||..!! ! !:!! !..!:!::!!||| !|||.!!:!:!!.|||:!!|||||| AspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5479 : GATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5421 vulgar: CbirOr230 134 215 . LHQN01028732.1 5663 5420 - 163 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5663 163 - . gene_id 1 ; sequence CbirOr230 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5663 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5663 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5663 163 - . alignment_id 1 ; Query CbirOr230 ; Align 5664 135 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr252 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 129 -> 181 Target range: 1878 -> 1722 130 : LeuValValAlaAlaIleIlePheValIlePheGluCysSerProIleIleLeuAspValIl : 150 ||| !!:!! !!||| !||||||:!! ! ! ! !:!!|||||||||||||||:!! LeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAspIleCy 1878 : TTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTG : 1818 151 : eAlaProMetAsnLysSerArgLeuArgLysValGluValAspPheGluLeuPheValAspG : 171 !||||||:!!||||||!!!||| !||| ! !!! ! ! ! ! !!:::!!|||! sAlaProLeuAsnLysThrArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspP 1817 : CGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATC : 1755 172 : lnGluGlnTyrPheValLeuTyrLeuValHis : 181 |||||||||!:!:!!:!! :!!:!!||| roGluGlnTyrTyrMetIleMetIleIleHis 1754 : CTGAGCAATACTACATGATAATGATAATACAC : 1723 vulgar: CbirOr252 129 181 . LHQN01028732.1 1878 1722 - 103 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1723 1878 103 - . gene_id 1 ; sequence CbirOr252 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 1723 1878 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1723 1878 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1723 1878 103 - . alignment_id 1 ; Query CbirOr252 ; Align 1879 130 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr275PI(F) Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 281 -> 331 Target range: 358639 -> 358792 282 : LeuPheArgTyrAspThrLeuTrpTyrValAlaProLeuProIleGlnLys<->LeuP : 300 |||!:!||||||..!:!! !||||||..!||| !!:!!||| !|||||| |||! LeuTyrArgTyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuL 358640 : CTTTATAGGTACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGT : 358697 301 : heLeuIleMetGlnLysSerIleArgSerHisGluIleMetLeuGlyGlyLeuPheVa : 319 !.! !||||||||| ! ||||||!:!..!:!!.!..!! !:!!|||||||||||||| euTyrIleMetGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheVa 358698 : TATACATCATGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGT : 358754 320 : lLeuSerValGluGlyPheSerThrLeuValSerSer : 331 |! !||| !:!!||||||||||||:!!..!..!||| lProSerTyrGlnGlyPheSerThrValThrAspSer 358755 : GCCGAGTTACCAAGGATTTTCTACGGTAACAGATTCT : 358792 vulgar: CbirOr275PI(F) 281 331 . KQ414693.1 358639 358792 + 118 M 17 51 G 0 3 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358640 358792 118 + . gene_id 1 ; sequence CbirOr275PI(F) ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 358640 358792 . + . KQ414693.1 exonerate:protein2genome:local exon 358640 358792 . + . insertions 3 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358640 358792 118 + . alignment_id 1 ; Query CbirOr275PI(F) ; Align 358640 282 51 ; Align 358694 299 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr266 Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 334 -> 381 Target range: 358648 -> 358792 335 : TyrAspAlaLeuTrpTyrValAlaProLeuProIleGlnLys<->LeuPheLeuMetM : 353 |||..!:!! !||||||..!||| !!:!!||| !|||||| |||!!.! !!!:| TyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuLeuTyrIleM 358649 : TACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGTTATACATCA : 358706 354 : etGlnThrSerIleLysSerHisLysLeuValLeuGlyGlyLeuPheValGlySerMe : 372 ||||| !||||||:!!..!:!!!!.!!! !:!!||||||||||||||| !||| etGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheValProSerTy 358707 : TGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGTGCCGAGTTA : 358763 373 : tGluGlyPheSerThrLeuValThrSer : 381 :!!||||||||||||:!!..! !||| rGlnGlyPheSerThrValThrAspSer 358764 : CCAAGGATTTTCTACGGTAACAGATTCT : 358792 vulgar: CbirOr266 334 381 . KQ414693.1 358648 358792 + 101 M 14 42 G 0 3 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358649 358792 101 + . gene_id 1 ; sequence CbirOr266 ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 358649 358792 . + . KQ414693.1 exonerate:protein2genome:local exon 358649 358792 . + . insertions 3 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358649 358792 101 + . alignment_id 1 ; Query CbirOr266 ; Align 358649 335 42 ; Align 358694 349 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr270 Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 333 -> 380 Target range: 358648 -> 358792 334 : TyrAspIleTyrTrpTyrValAlaProLeuProIleGlnLys<->LeuPheLeuIleM : 352 |||..! ! ||||||..!||| !!:!!||| !|||||| |||!!.! !|||| TyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuLeuTyrIleM 358649 : TACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGTTATACATCA : 358706 353 : etGlnLysSerIleLysSerHisLysIleMetLeuGlyGlyLeuPheValLeuSerIl : 371 ||||| ! ||||||:!!..!:!!!!..!! !:!!|||||||||||||||! !||| etGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheValProSerTy 358707 : TGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGTGCCGAGTTA : 358763 372 : eGluGlyPheSerThrLeuValThrSer : 380 !:!!||||||||||||:!!..! !||| rGlnGlyPheSerThrValThrAspSer 358764 : CCAAGGATTTTCTACGGTAACAGATTCT : 358792 vulgar: CbirOr270 333 380 . KQ414693.1 358648 358792 + 103 M 14 42 G 0 3 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358649 358792 103 + . gene_id 1 ; sequence CbirOr270 ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 358649 358792 . + . KQ414693.1 exonerate:protein2genome:local exon 358649 358792 . + . insertions 3 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358649 358792 103 + . alignment_id 1 ; Query CbirOr270 ; Align 358649 334 42 ; Align 358694 348 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr272PI Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 294 -> 339 Target range: 358648 -> 358783 295 : TyrAsnThrMetTrpTyrLeuAlaProLeuProIleGlnLysLeuLeuLeuPheValM : 314 |||!:!:!! |||||| !||| !!:!!||| !|||||| !||||||!:!:!!| TyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuLeuTyrIleM 358649 : TACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGTTATACATCA : 358706 315 : etGlnAsnSerMetLysAlaHisAlaLeuLeuLeuGlyGlyIleTyrValSerCysLe : 333 |||||:!!|||!!::!!! !:!! !!!!! !:!!||||||:!:!:!||| !! !!! etGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheValProSerTy 358707 : TGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGTGCCGAGTTA : 358763 334 : uGluGlyPheSerThrLeu : 339 !:!!||||||||||||:!! rGlnGlyPheSerThrVal 358764 : CCAAGGATTTTCTACGGTA : 358783 vulgar: CbirOr272PI 294 339 . KQ414693.1 358648 358783 + 113 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358649 358783 113 + . gene_id 1 ; sequence CbirOr272PI ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 358649 358783 . + . KQ414693.1 exonerate:protein2genome:local exon 358649 358783 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358649 358783 113 + . alignment_id 1 ; Query CbirOr272PI ; Align 358649 295 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr282 Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 201 -> 286 Target range: 357772 -> 358105 202 : IleMetTyrPheLeuHisSerCysAlaLeuPheLysValAlaSerTyrArgIleGluA : 221 |||::::::::!||| !:! ! !.!!..! !! !||||||||| !..!: IleLeuPheTyrLeuMetAsnLeuIleThrIleSerPheHisSerTyrArgAlaArgS 357773 : attttattctaCCTCATGAATCTAATTACTATCTCATTTCACAGTTATCGCGCAAGGT : 357830 222 : snAlaIleAspLysLysIleLeuAlaIleProAspProThrArgLysTyrLeuLeuGl : 240 :!!.!.!!..!||||||:!:||| ! ! !!..! !!:!!||| ! !:!!:!!!! erValPheSerLysLysValLeuAsnAlaSerSerThrSerArgAspSerValValHi 357831 : CTGTATTTAGTAAGAAAGTGTTGAATGCCTCAAGCACGTCAAGAGATAGTGTAGTGCA : 357887 241 : nGlnLysIleValHisAlaIleLeuIleHisArgArgAlaIle{Ly} >>>> Targ : 255 .:!!|||:!:|||.!.!.!:!: !!!:||||||||||||:!:{ !} sGluLysLeuValGluValValLysMetHisArgArgAlaVal{As}++ 357888 : CGAAAAATTGGTTGAAGTTGTGAAAATGCACAGACGAGCGGTG{GA}gt......... : 357936 256 : et Intron 1 >>>> {s}TyrIleGluLeuTrpSerSerAsnPheMetValProP : 268 78 bp { }!:! !.!.|||! !.!!..!::!||| ! !!! ++{p}PheCysAsnLeuLeuGlyGluSerPheGlySerSerT 357937 : ................ag{C}TTTTGCAATCTTTTGGGGGAATCCTTTGGATCTTCGT : 358049 269 : heThrIleLeuIleLeuIleGlyValSerSerLeuSerPheAsnLeuPheHisLeu : 286 :! !:!!|||:!!|||:!!||||||:!!!!! !|||.!!|||||| ! |||:!! yrPheLeuLeuLeuLeuLeuGlyValAlaCysThrSerIleAsnLeuValHisVal 358050 : ATTTTTTATTGCTCCTGTTAGGAGTGGCGTGTACAAGTATCAATCTTGTACATGTA : 358105 vulgar: CbirOr282 201 286 . KQ414693.1 357772 358105 + 113 M 53 159 S 0 2 5 0 2 I 0 74 3 0 2 S 1 1 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 357773 358105 113 + . gene_id 1 ; sequence CbirOr282 ; gene_orientation + KQ414693.1 exonerate:protein2genome:local cds 357773 357933 . + . KQ414693.1 exonerate:protein2genome:local exon 357773 357933 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local splice5 357934 357935 . + . intron_id 1 ; splice_site "GT" KQ414693.1 exonerate:protein2genome:local intron 357934 358011 . + . intron_id 1 KQ414693.1 exonerate:protein2genome:local splice3 358010 358011 . + . intron_id 0 ; splice_site "AG" KQ414693.1 exonerate:protein2genome:local cds 358012 358105 . + . KQ414693.1 exonerate:protein2genome:local exon 358012 358105 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 357773 358105 113 + . alignment_id 1 ; Query CbirOr282 ; Align 357773 202 159 ; Align 358013 256 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr274 Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 334 -> 381 Target range: 358648 -> 358792 335 : TyrAspThrLeuTrpTyrValAlaProLeuProIleGlnLys<->LeuPheLeuIleM : 353 |||..!:!! !||||||..!||| !!:!!||| !|||||| |||!!.! !|||| TyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuLeuTyrIleM 358649 : TACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGTTATACATCA : 358706 354 : etGlnLysSerIleGlnAsnHisLysLeuValMetGlyGlyLeuPheValLeuSerIl : 372 ||||| ! |||||||||:!!:!!!!.!!! !!!:|||||||||||||||! !||| etGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheValProSerTy 358707 : TGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGTGCCGAGTTA : 358763 373 : eGluGlyPheSerThrLeuIleThrSer : 381 !:!!||||||||||||:!!! ! !||| rGlnGlyPheSerThrValThrAspSer 358764 : CCAAGGATTTTCTACGGTAACAGATTCT : 358792 vulgar: CbirOr274 334 381 . KQ414693.1 358648 358792 + 107 M 14 42 G 0 3 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358649 358792 107 + . gene_id 1 ; sequence CbirOr274 ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 358649 358792 . + . KQ414693.1 exonerate:protein2genome:local exon 358649 358792 . + . insertions 3 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358649 358792 107 + . alignment_id 1 ; Query CbirOr274 ; Align 358649 335 42 ; Align 358694 349 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr269 Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 333 -> 380 Target range: 358648 -> 358792 334 : TyrAspThrLeuTrpTyrValAlaProLeuProIleGlnLys<->LeuPheLeuIleM : 352 |||..!:!! !||||||..!||| !!:!!||| !|||||| |||!!.! !|||| TyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuLeuTyrIleM 358649 : TACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGTTATACATCA : 358706 353 : etGlnLysSerIleArgAlaHisLysValValLeuGlyGlyLeuPheValLeuSerIl : 371 ||||| ! ||||||!:!! !:!!!!. !! !:!!|||||||||||||||! !||| etGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheValProSerTy 358707 : TGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGTGCCGAGTTA : 358763 372 : eGluGlyPheSerThrLeuMetThrSer : 380 !:!!||||||||||||:!!! !||| rGlnGlyPheSerThrValThrAspSer 358764 : CCAAGGATTTTCTACGGTAACAGATTCT : 358792 vulgar: CbirOr269 333 380 . KQ414693.1 358648 358792 + 100 M 14 42 G 0 3 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358649 358792 100 + . gene_id 1 ; sequence CbirOr269 ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 358649 358792 . + . KQ414693.1 exonerate:protein2genome:local exon 358649 358792 . + . insertions 3 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358649 358792 100 + . alignment_id 1 ; Query CbirOr269 ; Align 358649 334 42 ; Align 358694 348 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr269 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 84 -> 203 Target range: 46096 -> 45745 85 : AsnSerGluAlaValLysGlnMetLeuGluHisIleGlnLeuAspTrpLysMetTyrGly : 104 ||| :::|||::: :::||| !..!||| !!:::::! ! ..! AsnValThrGluIleLysLysArgLysGlnHisAspSerLeuArgTyrArgLysLeuSer 46096 : AATGtgacagaaataaaaaaaagaaaacagcacGATTCGTTACGTTACCGTAAATTATCC : 46039 105 : AsnSerGlyThrMetLysIlePheGluGluTyrLeuPheGluSerTyrIlePheAlaVal : 124 !|||..!! !!!: .!!.!!.!.!!: ! ! ! ! !! !! !:!!!!.:!!:!! PheSerSerIleIleLeuPheIleAsnAspLysGlnHis***IleSerValLeuSerIle 46038 : TTCTCGTCGATAATACTTTTTATCAACGACAAGCAACATTGAATTTCCGTTTTATCGATA : 45979 125 : ThrLeuCysIleSerLeuPheLeuGlyValSerGlyIleThrThrPheGluCysArgSer : 144 ! !! :!!!!!:!!!:!:!!|||||||||! !.!!:!!||| !! ! !! HisAlaSerValThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIlePro 45978 : CATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCG : 45919 145 : IleIleLeuAspValIleIleProMetAsnGluSerArgProArgLysIleGluMetAsp : 164 .!!|||||||||:!!||| !|||:!!|||||||||||||||||| ! !! ! PheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLys 45918 : TTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAA : 45859 165 : LeuGluLeuPheIleAsnGluGluGlnTyrPhePheValTyrLeuValGlnGlnValVal : 184 ! ! ! !!:!.!!||| !!!:.!.|||!:! |||! !||| ! ! !..! AlaTyrCysTyrPheAsnProAspAspTyrTyr------TyrTyrValValGlyTyrThr 45858 : GCCTACTGTTACTTCAATCCGGACGACTACTAT------TATTACGTCGTGGGGTACACC : 45805 185 : GlyValAlaLeuGlyIleTrpSerMetIleMetThrGlyThrValIleIleThrVal : 203 .!!!.!..!:!!|||!!: .!!:!::!::!:..!|||.!!! !||||||! !:!! SerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAlaAspIleIleMetIle 45804 : AGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATTATGATA : 45746 vulgar: CbirOr269 84 203 . KQ414772.1 46096 45745 - 103 M 91 273 G 2 0 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45746 46096 103 - . gene_id 1 ; sequence CbirOr269 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45746 46096 . - . KQ414772.1 exonerate:protein2genome:local exon 45746 46096 . - . insertions 0 ; deletions 2 KQ414772.1 exonerate:protein2genome:local similarity 45746 46096 103 - . alignment_id 1 ; Query CbirOr269 ; Align 46097 85 273 ; Align 45824 178 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr283 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 134 -> 214 Target range: 38012 -> 37772 135 : LeuCysTyrIleThrLeuGlnLeuLeuProLeuIleLeuAsnValIleAlaProLeuAsn : 154 :!! !:!! !:!!:!! !:!! !|||! !:!!|||:!!:!!|||:!!||| !||| ValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 38012 : GTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAAC : 37955 155 : GluSerArgSerValLysLeuIleAlaThrThrGluTyrPheLeuAsnArgGluLysTyr : 174 |||||||||.!!||| ! !!!||| ! !!.!! ! ||| !|||:!!..!|||:!!:!! GluSerArgGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHis 37954 : GAATCGCGTGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAGGAACAT : 37895 175 : IleTrpIleMetLeuLeuHisGluIleValThrAlaTyrLeuArgLeuIleThrLeuCys : 194 !!::|||:!!:!! !||| !:!! !..! ! !:!! !!!!.!!..!! ! ! TyrTyrIleLeuMetGlyHisMetLeuCysValIleThrValValPhePheValTyrIle 37894 : TATTACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTGTACATC : 37835 195 : SerIleSerMetThrLeuLeuMetGlnIleLeuHisAlaCysAlaLeuPheAsnIleAla : 214 ||| !..!! !! !! !:!!! :!!! !|||||||||!.!|||.!.|||:!!:!! SerCysAspThrIleTyrMetSerIleValGlnHisAlaCysGlyLeuLeuAsnValSer 37834 : TCCTGTGACACGATCTACATGAGCATCGTTCAACACGCGTGCGGATTACTGAACGTCTCT : 37775 vulgar: CbirOr283 134 214 . KQ414772.1 38012 37772 - 106 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37773 38012 106 - . gene_id 1 ; sequence CbirOr283 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37773 38012 . - . KQ414772.1 exonerate:protein2genome:local exon 37773 38012 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 37773 38012 106 - . alignment_id 1 ; Query CbirOr283 ; Align 38013 135 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr286 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 136 -> 213 Target range: 20556 -> 20325 137 : TyrIleThrLeuGlnPheLeuProLeuIleLeuAspValIleLeuProLeuAsnGluSer : 156 !:!:!! !:!!! ||| !|||:!!|||||||||:!! ! !|||||||||:!!!!! PheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsnLysThr 20556 : TTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAACAAAACG : 20499 157 : ArgSerLeuLysLeuIleValIleThrGluTyrPheValAsnArgGluLysTyrLeuTrp : 176 |||!.!! ! !!!!:!! ! !.!! ! |||!:::!!:!!! !|||:!!|||! ! ! ArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMet 20498 : AGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATG : 20439 177 : LeuMetLeuLeuHisGluIleValAlaIleTyrLeuArgValIleThrIleCysCysThr : 196 :!!|||:!!:!!||| !!!: !!!.!:!: !:!! ! !:!!! !.!!|||..! ! IleMetIleIleHisIleMetPheValValIleMetValCysValIlePheCysAlaCys 20438 : ATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGTGCTTGC : 20379 197 : ThrThrThrIleMetMetTyrIleLeuHisAlaCysAlaLeuPheLysVal : 213 !! !!.! !:!! !:!:! !|||||||||!.!|||!!. ||| AspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaVal 20378 : GACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: CbirOr286 136 213 . KQ414772.1 20556 20325 - 119 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20556 119 - . gene_id 1 ; sequence CbirOr286 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20556 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20556 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20326 20556 119 - . alignment_id 1 ; Query CbirOr286 ; Align 20557 137 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr286 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 131 -> 234 Target range: 42724 -> 42415 132 : CysAspThrLeuCysTyrIleThrLeuGlnPheLeuProLeuIleLeuAspValIleLeu : 151 ||| ! ! ! !:!|||:!! !! !:!:!!|||! !:!!! !||||||!!:||| CysCysPheThrMetPheIleSerAlaProTyrIleProHisValTyrAspValMetLeu 42724 : TGTTGCTTCACAATGTTTATCTCTGCGCCTTATATACCGCATGTATATGATGTTATGTTA : 42667 152 : ProLeuAsnGluSerArgSerLeuLysLeuIleValIleThrGluTyrPheValAsnArg : 171 !! !||||||||||||!.!||| !!!||| ! !.!! ! ||| !|||:!!!:! SerLysAsnGluSerArgLysLeuGlyPheIleTyrProAlaTyrTyrGlyValAspGln 42666 : TCGAAAAACGAGTCACGAAAGTTGGGTTTCATTTACCCTGCCTATTATGGCGTTGATCAA : 42607 172 : GluLysTyrLeuTrpLeuMetLeuLeuHisGluIleValAlaIleTyrLeuArgValIle : 191 !!:||||||! !!::! !!!::!! !||| !! ! !!.! !! :!! ! !!.!! AspLysTyrTyrTyrTyrIleIleAlaHisMetThrSerGlyGlyLeuValValPhePhe 42606 : GACAAGTATTATTACTATATAATAGCTCACATGACATCTGGGGGCTTAGTGGTGTTTTTC : 42547 192 : ThrIleCysCysThrThrThrThrIleMetMetTyrIleLeuHisAlaCysAlaLeuPhe : 211 |||.!! !! ! ! !|||! ! !|||! !:!:! !|||||||||!.!|||!!. ThrPheIleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeu 42546 : ACCTTTATCTCCTGCGACACGATTTACATGAATATCGTGCAACACGCGTGCGGATTGTTG : 42487 212 : LysValAlaSerTyrArgMetGluAsnAlaIleGlnGluAspMetLeuAlaMetCysAsn : 231 !:!!:!!.!!!! ! !! !.!. ! !...||| !!:!:|||...::: ||| LeuIleSerGly***ThrAsnLeuGlnIle***SerGluTyrLeuLeuGlyIlePheAsn 42486 : TTGATTTCTGGGTAAACGAATTTACAGATTTAATCCGAGTATCTTCTGggaattttcaat : 42427 232 : ProValGln : 234 :::::! GlnIleGlu 42426 : caaattgaA : 42416 vulgar: CbirOr286 131 234 . KQ414772.1 42724 42415 - 108 M 103 309 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42416 42724 108 - . gene_id 2 ; sequence CbirOr286 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42416 42724 . - . KQ414772.1 exonerate:protein2genome:local exon 42416 42724 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42416 42724 108 - . alignment_id 2 ; Query CbirOr286 ; Align 42725 132 309 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr286 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 133 -> 214 Target range: 14139 -> 13896 134 : ThrLeuCysTyrIleThrLeuGlnPheLeuProLeuIleLeuAspValIleLeuProLeu : 153 ..!:!! !:!:!:||| !! ! ! !|||! !|||||||||:!!:!!|||||| ! ValIleLeuPheValThrThrProValThrProHisIleLeuAspIleLeuLeuProLys 14139 : GTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAG : 14082 154 : AsnGluSerArgSerLeuLysLeuIleValIleThrGluTyrPheValAsnArgGluLys : 173 ||||||||||||..!:!! !! !||| ! .!! ! ||||||..!:!!..!.!.||| AsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLys 14081 : AACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAG : 14022 174 : TyrLeuTrpLeuMetLeuLeuHisGluIleValAlaIleTyrLeuArgValIleThrIle : 193 ||| ! !! !!!::!! !||| ! !!.!||| !:!! ! !! !..! ! TyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyr 14021 : TACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTAC : 13962 194 : CysCysThrThrThrThrIleMetMetTyrIleLeuHisAlaCysAlaLeuPheLysVal : 213 !..! ! !|||!:! !!!: !:!:! !|||!.!|||!.!|||!!. ||| ValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaVal 13961 : GTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTG : 13902 214 : Ala : 214 :!! Ser 13901 : TCC : 13897 vulgar: CbirOr286 133 214 . KQ414772.1 14139 13896 - 105 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13897 14139 105 - . gene_id 3 ; sequence CbirOr286 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13897 14139 . - . KQ414772.1 exonerate:protein2genome:local exon 13897 14139 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13897 14139 105 - . alignment_id 3 ; Query CbirOr286 ; Align 14140 134 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr286 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 134 -> 214 Target range: 33655 -> 33415 135 : LeuCysTyrIleThrLeuGlnPheLeuProLeuIleLeuAspValIleLeuProLeuAsn : 154 :!! !:!! !:!! !! |||:!!|||! !.!!:!!|||||| ||| !! !||| IleMetPheSerSerAlaProPheIleProHisPheIleAspValAlaLeuSerLysAsn 33655 : ATCATGTTCAGCTCGGCGCCTTTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAAC : 33598 155 : GluSerArgSerLeuLysLeuIleValIleThrGluTyrPheValAsnArgGluLysTyr : 174 |||||||||!.!|||!..|||!!: ! !.!! ! ||| !:!!:!!!:!!::|||||| GluSerArgLysLeuSerLeuMetTyrProAlaTyrTyrGlyIleAspGlnAspLysTyr 33597 : GAGTCACGAAAATTAAGTTTGATGTACCCTGCCTATTACGGCATTGACCAGGacaagtat : 33538 175 : LeuTrpLeuMetLeuLeuHisGluIleValAlaIleTyrLeuArgValIleThrIleCys : 194 ::: :::::: !||| !!!: !||| ! ! !!.!!..!.!! TyrTyrTyrLeuMetAlaHisMetMetSerAlaGlyAlaAlaValPhePheValPheMet 33537 : tattattatctaatgGCTCACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATG : 33478 195 : CysThrThrThrThrIleMetMetTyrIleLeuHisAlaCysAlaLeuPheLysValAla : 214 ! ! ! !|||! ! !|||! !:!!! !|||||||||!.!|||!!. :!!:!! SerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuPheIleSer 33477 : TCCTGCGACACGATTTATATGAATATCGTTCAACACGCGTGCGGATTGTTGTTCATTTCC : 33418 vulgar: CbirOr286 134 214 . KQ414772.1 33655 33415 - 100 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33416 33655 100 - . gene_id 4 ; sequence CbirOr286 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33416 33655 . - . KQ414772.1 exonerate:protein2genome:local exon 33416 33655 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 33416 33655 100 - . alignment_id 4 ; Query CbirOr286 ; Align 33656 135 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr288PSE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 137 -> 208 Target range: 26225 -> 26012 138 : PheAlaIleLeuHisPheLeuProLeuMetLeuAspValIleLeuProLeuAsnGluSer : 157 ||| ! !|||! |||:!! !!! !!!:||||||:!!:!!:!!||||||||||||!!! PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThr 26225 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACG : 26168 158 : ArgProLeuGlnPheIleValThrMetGluTyrLeuIleAsnGlnGluGluTyrPheTyr : 177 ||| !!! ! !|||:!! ! !! ! |||!!!:!!:!!:!!!!::!!||| !||| ArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyr 26167 : CGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTAC : 26108 178 : IleIlePheLeuHisValGlyLeuThrPheValValSerMetIleAlaIleGlyIleThr : 197 :!:||| ! !|||:!! !|||..! ! |||:!! !!!: !!.!.!! !! ! ! LeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCys 26107 : TTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGC : 26048 198 : ThrAlaThrIleMetLeuTyrIleLeuHisAla : 208 !|||!.! !:!!! ! !:!:! !|||||| AspAlaAsnTyrValTyrAlaValGlnHisAla 26047 : GATGCCAATTACGTGTACGCCGTGCAACACGCT : 26013 vulgar: CbirOr288PSE 137 208 . LHQN01017803.1 26225 26012 - 103 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 26013 26225 103 - . gene_id 1 ; sequence CbirOr288PSE ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 26013 26225 . - . LHQN01017803.1 exonerate:protein2genome:local exon 26013 26225 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 26013 26225 103 - . alignment_id 1 ; Query CbirOr288PSE ; Align 26226 138 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr272PI Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 80 -> 180 Target range: 26276 -> 25976 81 : SerPheTyrPheAsnAlaLysGluValLeuPheSerPheSerIlePhePheLeuLeuIle : 100 ||||||||||||!.. !:!! !|||! !.!.|||!!.!!! ! !.!.!!!:!! ! SerPheTyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCys 26276 : TCATTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGC : 26219 101 : ValGluLeuIleProValIleLeuAspThrValValProIleAsnGluSerArgGlnArg : 120 :!! !!!!:!: !! !|||||||||! !:!!:!!|||:!:||||||!!!||| !||| LeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArg 26218 : TTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGG : 26159 121 : LysLeuGlnIleAspPheGluPhePheIleAspGluGluLysTyrPheTyrValTyrLeu : 140 !!!! ! ! ! !:!|||:!!||||||!!:|||||| !|||:!! !:!! LeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleVal 26158 : TTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTA : 26099 141 : IleHisGluIleThrValValLeuIleGlyValPheThrMetLeuAlaThrGlyThrLeu : 160 ||| ! ! !||||||:!!!!: !:!!! !..!.!.! !||| !! !.!! ! GlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsn 26098 : GGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAAT : 26039 161 : ProIleAlaPhePheArgHisCysCysAlaIleCysLysIleSerSerAsnLeuIleGlu : 180 !:!: ! ! ! !:!|||..!|||!.!:!:! |||:!!.!! ! |||:!!:!! TyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***LeuValGln 26038 : TACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAA : 25979 vulgar: CbirOr272PI 80 180 . LHQN01017803.1 26276 25976 - 130 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25977 26276 130 - . gene_id 1 ; sequence CbirOr272PI ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25977 26276 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25977 26276 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25977 26276 130 - . alignment_id 1 ; Query CbirOr272PI ; Align 26277 81 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr273CTE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 132 -> 224 Target range: 26234 -> 25958 133 : ValSerValPheIleIlePheGluCysIleProValPheLeuAspValPheLeuProLeu : 152 !.!:!!:!!|||!!: !!!. !! !:!: !! !.!!||||||:!!.!!:!!|||||| AlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeu 26234 : GCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTG : 26177 153 : AsnGluSerArgLeuArgLysThrGluIleSerPheGluTyrPheLeuAspAspGlnGln : 172 ||||||!!!||| !||| ! !! ! !! ! ! ||||||:!!|||!!:.!.:!! AsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLys 26176 : AACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAA : 26117 173 : TyrPhePheLeuTyrValIleHisGluPheIleGlyLeuLeuIleGlyLeuSerSerMet : 192 ||| !!:!||| !||| ||| !!:!:!!! !:!!:!!!!: !:!!||| !.!. TyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPhe 26116 : TATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTC : 26057 193 : SerIleThrGlySerTyrLeuLeuValIleAlaThrHisThrCysAlaValTyrLysVal : 212 !!! ! !! !:!! !!! !:!! ! !!.! !|||.!!|||!.!:!!! :!! CysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 26056 : TGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 25997 213 : AlaSerAsnLeuMetGlnGlyThrValThrGluHis : 224 |||.!! ! |||:!:|||||| !:!!! !|||:!! AlaGly***LeuValGlnGlyGlnLeuMetGluAsn 25996 : GCAGGGTAATTAGTTCAAGGACAATTAATGGAAAAT : 25959 vulgar: CbirOr273CTE 132 224 . LHQN01017803.1 26234 25958 - 118 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25959 26234 118 - . gene_id 1 ; sequence CbirOr273CTE ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25959 26234 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25959 26234 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25959 26234 118 - . alignment_id 1 ; Query CbirOr273CTE ; Align 26235 133 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr286 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 134 Query range: 136 -> 225 Target range: 26225 -> 25958 137 : TyrIleThrLeuGlnPheLeuProLeuIleLeuAspValIleLeuProLeuAsnGluSer : 156 !:!!!: !|||! !|||:!! !!! !|||||||||:!!:!!:!!||||||||||||!!! PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThr 26225 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACG : 26168 157 : ArgSerLeuLysLeuIleValIleThrGluTyrPheValAsnArgGluLysTyrLeuTrp : 176 |||:!!! ! !!!!:!! ! !.!! ! |||||||||:!!..!!!:||||||! !!:: ArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyr 26167 : CGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTAC : 26108 177 : LeuMetLeuLeuHisGluIleValAlaIleTyrLeuArgValIleThrIleCysCysThr : 196 |||!!::!! !||| ! !:!!!.!:!: :!!! !:!! !..!.!!|||..! ! LeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCys 26107 : TTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGC : 26048 197 : ThrThrThrIleMetMetTyrIleLeuHisAlaCysAlaLeuPheLysValAlaSerTyr : 216 !.!!!.! !:!! !:!:! !|||||||||!.!|||!!. :!!|||.!!!! AspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly*** 26047 : GATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAA : 25988 217 : ArgMetGluAsnAlaIleGlnGluAsp : 225 !:!::!!... !:!!..!|||:!! LeuValGlnGlyGlnLeuMetGluAsn 25987 : TTAGTTCAAGGACAATTAATGGAAAAT : 25959 vulgar: CbirOr286 136 225 . LHQN01017803.1 26225 25958 - 134 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25959 26225 134 - . gene_id 1 ; sequence CbirOr286 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25959 26225 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25959 26225 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25959 26225 134 - . alignment_id 1 ; Query CbirOr286 ; Align 26226 137 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr286 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 133 -> 214 Target range: 14176 -> 13933 134 : ThrLeuCysTyrIleThrLeuGlnPheLeuProLeuIleLeuAspValIleLeuProLeu : 153 ..!:!! !:!:!::!! !! ! ! !|||! !|||||||||:!!:!!|||||| ! ValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProLys 14176 : GTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAG : 14119 154 : AsnGluSerArgSerLeuLysLeuIleValIleThrGluTyrPheValAsnArgGluLys : 173 ||||||||||||..!:!! !! !||| ! .!! ! ||||||..!:!!..!.!.||| AsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLys 14118 : AACGAGTCACGAGACGTAGCGTACATTTATCCGGCCTATTATTTCACCGACGAGCATAAG : 14059 174 : TyrLeuTrpLeuMetLeuLeuHisGluIleValAlaIleTyrLeuArgValIleThrIle : 193 ||| ! !! !!!::!! !||| ! !!.!||| !:!! ! !! !..! ! TyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyr 14058 : TACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTAC : 13999 194 : CysCysThrThrThrThrIleMetMetTyrIleLeuHisAlaCysAlaLeuPheLysVal : 213 !..! ! !|||!:! !!!: !:!:! !|||!.!|||!.!|||!!. ||| ValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaVal 13998 : GTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTG : 13939 214 : Ala : 214 :!! Ser 13938 : TCC : 13934 vulgar: CbirOr286 133 214 . LHQN01017803.1 14176 13933 - 101 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13934 14176 101 - . gene_id 2 ; sequence CbirOr286 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13934 14176 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13934 14176 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13934 14176 101 - . alignment_id 2 ; Query CbirOr286 ; Align 14177 134 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr283 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 136 -> 225 Target range: 26225 -> 25958 137 : TyrIleThrLeuGlnLeuLeuProLeuIleLeuAsnValIleAlaProLeuAsnGluSer : 156 !:!!!: !|||! !!!!:!! !!! !||||||:!!:!!:!! !||||||||||||!!! PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThr 26225 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACG : 26168 157 : ArgSerValLysLeuIleAlaThrThrGluTyrPheLeuAsnArgGluLysTyrIleTrp : 176 |||:!! ! !!!!:!! ! !!.!! ! ||||||:!!:!!..!!!:|||||| !!:: ArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyr 26167 : CGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTAC : 26108 177 : IleMetLeuLeuHisGluIleValThrAlaTyrLeuArgLeuIleThrLeuCysSerIle : 196 :!:!!::!! !||| ! !:!!..!!.! :!!! !:!! !..!!!!|||:!! ! LeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCys 26107 : TTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGC : 26048 197 : SerMetThrLeuLeuMetGlnIleLeuHisAlaCysAlaLeuPheAsnIleAlaSerTyr : 216 ..! !.!! !:!! :!:! !|||||||||!.!|||!!. !||||||.!!!! AspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly*** 26047 : GATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAA : 25988 217 : LeuMetGluAsnAlaIleProGluAsn : 225 |||:!::!!... !:!! !|||||| LeuValGlnGlyGlnLeuMetGluAsn 25987 : TTAGTTCAAGGACAATTAATGGAAAAT : 25959 vulgar: CbirOr283 136 225 . LHQN01017803.1 26225 25958 - 122 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25959 26225 122 - . gene_id 1 ; sequence CbirOr283 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25959 26225 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25959 26225 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25959 26225 122 - . alignment_id 1 ; Query CbirOr283 ; Align 26226 137 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr279 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 150 -> 285 Target range: 26195 -> 25692 151 : LeuAspMetIleLeuProLeuAsnGluSerArgGluGlnGlyThrHisLeuMetValGlu : 170 ||||||!!::!!:!!||||||||||||!!!|||! !!:! ! ! !! ! !.! ! LeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyr 26195 : CTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTAC : 26138 171 : TyrPheIleAspProSerLysTyrHisIleLeuIleValSerHisLeuThrLeuTyrIle : 190 ||||||:!!||| !..!||||||||| !|||||||||.!!|||:!! !||| :!: TyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValVal 26137 : TATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTG : 26078 191 : CysLeuGlyAlaIleGlyValMetAlaIleAlaLeuThrPheLeuSerPheGlyPheHis : 210 :!! ! ! !! ! !! ||| !! ! !!.!!:!:!!! ! !! ! ||| ValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHis 26077 : GTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACAC : 26018 211 : SerCysAlaLeuLeuLysLeuThr{As} >>>> Target Intron 1 >>>> {n} : 219 :!!|||!.!|||||| :!!.!!{..} 92 bp {.} AlaCysGlyLeuLeuAlaIleAla{Gl}++ ++{y} 26017 : GCTTGCGGATTGTTGGCCATTGCA{GG}gt.........................ag{A} : 25897 220 : TyrHisValLysIleMetMetAspGlnThrValLeuGlnThrProSerProArgLysGlu : 239 |||!.! !!||| ! !!:!!..!:!!! !:!! ! !!.! ! ! !:!! TyrArgPheLysTyrAlaCysTyrGluValIleProGluAspGluLysGluAlaValLys 25896 : TATCGTTTTAAATACGCCTGCTATGAGGTAATACCCGAGGATGAGAAGGAAGCTGTGAAG : 25839 240 : GlnVal<-><->IleTyrGluArgIleValPheAlaIleAlaValHisArgArgAlaLeu : 257 ..!:!! !!:|||..!!.!:!! ! !:!!||| !:!!|||!:!||||||||| MetMetArgLysMetTyrArgAsnValCysHisSerIleArgIleHisGlnArgAlaLeu 25838 : ATGATGAGAAAGATGTATAGAAATGTTTGTCATTCGATTCGAATACATCAACGTGCTTTA : 25779 258 : GlnPheCysLysGlnPheValLeuSerLeuGluThrTrpPhePheValIleThrIleIle : 277 |||! ...:::||| |||:::||| ||| ! !|||.!! GlnSerValLeuLeuLeuLeuLeuLeuLeuGlnThrAlaLysPheHisGlyTrpIlePhe 25778 : CAGTcggtattattattattattattattacagactgcaaaatttcacgGTTGGATCTTT : 25719 278 : GlyValLeuSerLeuSerIleAsn : 285 !|||:!!! !! !:!!|||||| LeuValIlePheSerAlaIleAsn 25718 : TTGGTTATTTTTTCAGCAATTAAT : 25693 vulgar: CbirOr279 150 285 . LHQN01017803.1 26195 25692 - 123 M 68 204 S 0 2 5 0 2 I 0 88 3 0 2 S 1 1 M 22 66 G 0 6 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25693 26195 123 - . gene_id 1 ; sequence CbirOr279 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 25990 26195 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25990 26195 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 25988 25989 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 25898 25989 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 25898 25899 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 25693 25897 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25693 25897 . - . insertions 6 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25693 26195 123 - . alignment_id 1 ; Query CbirOr279 ; Align 26196 151 204 ; Align 25897 220 66 ; Align 25825 242 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr269 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 84 -> 203 Target range: 33843 -> 33492 85 : AsnSerGluAlaValLysGlnMetLeuGluHisIleGlnLeuAspTrpLysMetTyrGly : 104 ||| :::|||::: :::||| !..!||| !!:::::! ! ..! AsnValThrGluIleLysLysArgLysGlnHisAspSerLeuArgTyrArgLysLeuSer 33843 : AATGtgacagaaataaaaaaaagaaaacagcacGATTCGTTACGTTACCGTAAATTATCC : 33786 105 : AsnSerGlyThrMetLysIlePheGluGluTyrLeuPheGluSerTyrIlePheAlaVal : 124 !|||..!! !!!: .!!.!!.!.!!: ! ! ! ! !! !! !:!!!!.:!!:!! PheSerSerIleIleLeuPheIleAsnAspLysGlnHis***IleSerValLeuSerIle 33785 : TTCTCGTCGATAATACTTTTTATCAACGACAAGCAACATTGAATTTCCGTTTTATCGATA : 33726 125 : ThrLeuCysIleSerLeuPheLeuGlyValSerGlyIleThrThrPheGluCysArgSer : 144 ! !! :!!!!!:!!!:!:!!|||||||||! !.!!:!!||| !! ! !! HisAlaSerValThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIlePro 33725 : CATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCG : 33666 145 : IleIleLeuAspValIleIleProMetAsnGluSerArgProArgLysIleGluMetAsp : 164 .!!|||||||||:!!||| !|||:!!|||||||||||||||||| ! !! ! PheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLys 33665 : TTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAA : 33606 165 : LeuGluLeuPheIleAsnGluGluGlnTyrPhePheValTyrLeuValGlnGlnValVal : 184 ! ! ! !!:!.!!||| !!!:.!.|||!:! |||! !||| ! ! !..! AlaTyrCysTyrPheAsnProAspAspTyrTyr------TyrTyrValValGlyTyrThr 33605 : GCCTACTGTTACTTCAATCCGGACGACTACTAT------TATTACGTCGTGGGGTACACC : 33552 185 : GlyValAlaLeuGlyIleTrpSerMetIleMetThrGlyThrValIleIleThrVal : 203 .!!!.!..!:!!|||!!: .!!:!::!::!:..!|||.!!! !||||||! !:!! SerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAlaAspIleIleMetIle 33551 : AGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATTATGATA : 33493 vulgar: CbirOr269 84 203 . LHQN01017803.1 33843 33492 - 103 M 91 273 G 2 0 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33493 33843 103 - . gene_id 1 ; sequence CbirOr269 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33493 33843 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33493 33843 . - . insertions 0 ; deletions 2 LHQN01017803.1 exonerate:protein2genome:local similarity 33493 33843 103 - . alignment_id 1 ; Query CbirOr269 ; Align 33844 85 273 ; Align 33571 178 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr282 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 145 -> 213 Target range: 467686 -> 467890 146 : LeuLeuLeuAsnValLeuLeuProLeuAsnAlaSerArgSerLeuGluLeuIleGlyI : 165 ::::::...|||:::::: ! !!||||||!.!||||||..!:!!|||||| !!.! IleIlePheAsnIleValThrSerLeuAsnValSerArgGluIleGluLeuProAlaA 467687 : ataattttcaatattgtaaCATCGTTGAACGTATCACGTGAGATTGAATTACCTGCTG : 467744 166 : leThrGluTyrPheValAsnArgGluLysPhePheTrpAlaLeuLeuPheHisGluVa : 184 ! !|||||||||..!:!!..!...|||!:!!:! ! !|||!!.|||! !|| spLeuGluTyrPheThrAspGluSerLysTyrTyrProIleLysLeuLeuHisValVa 467745 : ATCTTGAGTACTTTACAGACGAAAGCAAGTATTATCCTATTAAACTGTTACATGTGGT : 467801 185 : lValThrValTyrValGlyValThrAlaValCysSerThrGlyGlyThrThrIleMet : 203 | ! !!.! !..!|||||||||!.!||| !! !! !! !.!!||| !:!:!!: lSerHisAlaIleThrGlyValThrValValIlePheIleAspSerThrLeuLeuIle 467802 : TAGTCATGCTATCACTGGAGTGACGGTTGTGATTTTCATTGATAGTACGTTGTTGATA : 467858 204 : TyrPheLeuHisSerCysAlaLeuPheLys : 213 !:!.!!! !:!!|||||||||||||||||| PheLeuGlnTyrSerCysAlaLeuPheLys 467859 : TTCCTCCAATATTCTTGTGCGCTCTTCAAA : 467890 vulgar: CbirOr282 145 213 . KQ414815.1 467686 467890 + 123 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 467687 467890 123 + . gene_id 1 ; sequence CbirOr282 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 467687 467890 . + . KQ414815.1 exonerate:protein2genome:local exon 467687 467890 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 467687 467890 123 + . alignment_id 1 ; Query CbirOr282 ; Align 467687 146 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr282 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 146 -> 214 Target range: 485722 -> 485926 147 : LeuLeuAsnValLeuLeuProLeuAsnAlaSerArgSerLeuGluLeuIleGlyIleT : 166 :!!|||:!!:!!|||:!!||||||||| !!!!||| !!! ! !:!! ! !! !: IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 167 : hrGluTyrPheValAsnArgGluLysPhePheTrpAlaLeuLeuPheHisGluValVa : 185 !!|||:!!||||||:!!!:!:!!|||!:!|||!:: !!:!! ! |||! |||:! erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 186 : lThrValTyrValGlyValThrAlaValCysSerThrGlyGlyThrThrIleMetTyr : 204 ! !||| !:!!|||!.!! !!.!:!! !|||||| ::: ! uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 205 : PheLeuHisSerCysAlaLeuPheLysVal : 214 .!.! !|||!!!|||!.!|||!:!! !:!! IleGlnHisThrCysGlyLeuTyrThrIle 485895 : ATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr282 146 214 . KQ414815.1 485722 485926 + 106 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485926 106 + . gene_id 2 ; sequence CbirOr282 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485926 106 + . alignment_id 2 ; Query CbirOr282 ; Align 485723 147 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr282 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 334 -> 380 Target range: 441705 -> 441843 335 : TyrAsnGlyLeuTrpTyrAlaAlaProLeuHisThrGlnLysLeuLeuLeuPheLeuM : 354 ||||||..! !||||||..!!.!|||||| !.!!||||||||||||||||||:!!| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 355 : etGlnLysAlaAlaValLysValThrLeuValCysGlySerIlePheValAlaSerLe : 373 ||..!|||::!.!!:!! ! !! !:!! ! !..!.!!||||||!.! !!!!!! etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 374 : uGluGlyPheValThrLeuVal : 380 !:!!|||||| !:!!:!!:!! rLysGlyPheSerSerValIle 441821 : CAAAGGTTTTTCCTCGGTAATT : 441843 vulgar: CbirOr282 334 380 . KQ414815.1 441705 441843 + 102 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441843 102 + . gene_id 3 ; sequence CbirOr282 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441706 441843 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441843 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441843 102 + . alignment_id 3 ; Query CbirOr282 ; Align 441706 335 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr282 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 334 -> 380 Target range: 445817 -> 445955 335 : TyrAsnGlyLeuTrpTyrAlaAlaProLeuHisThrGlnLysLeuLeuLeuPheLeuM : 354 ||||||..! !||||||..!!.!|||||| !.!!||||||||||||||||||:!!| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 355 : etGlnLysAlaAlaValLysValThrLeuValCysGlySerIlePheValAlaSerLe : 373 ||..!|||::!.!!:!! ! !! !:!! ! !..!.!!||||||!.! !!!!!! etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 374 : uGluGlyPheValThrLeuVal : 380 !:!!|||||| !:!!:!!:!! rLysGlyPheSerSerValIle 445933 : CAAAGGTTTTTCCTCGGTAATT : 445955 vulgar: CbirOr282 334 380 . KQ414815.1 445817 445955 + 102 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 445955 102 + . gene_id 4 ; sequence CbirOr282 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445818 445955 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445955 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 445955 102 + . alignment_id 4 ; Query CbirOr282 ; Align 445818 335 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr278 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 147 -> 216 Target range: 485719 -> 485926 148 : ThrIleIleAspValLeuLeuProLeuAsnLeuThrArgThrGlnGlyLeuHisLeuI : 167 !:!|||:!:|||:!!|||:!!|||||||||! !|||||| !!!:! !:!!! !:!!! SerIleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleA 485720 : AGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAA : 485777 168 : leValGluTyrPheValAspProSerLysTyrPheThrLeuIleLeuIleHisLeuTh : 186 ! !|||:!!|||||||||! !..!||||||||| !! !||| ! !|||:!!.. snSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValVa 485778 : ACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGT : 485834 187 : rIleSerIleCysLeuGlyValIleThrIleThrSerThrSerLeuMetLeuLeuGly : 205 !:!!! !:!! !:!!|||!.!|||..!:!! !||||||...::::::::::::..! lLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAla 485835 : TCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCG : 485891 206 : IleGlyPheHisCysCysAlaLeuPheLysLeu : 216 ||| ! ||| !|||!.!|||!:!! !:!! IleIleGlnHisThrCysGlyLeuTyrThrIle 485892 : ATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr278 147 216 . KQ414815.1 485719 485926 + 142 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485720 485926 142 + . gene_id 1 ; sequence CbirOr278 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485720 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485720 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485720 485926 142 + . alignment_id 1 ; Query CbirOr278 ; Align 485720 148 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr278 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 145 -> 216 Target range: 457198 -> 457411 146 : IleProThrIleIleAspValLeuLeuProLeuAsnLeuThrArgThrGlnGlyLeuH : 165 .!!|||! !:!!:!!|||:!!:!!:!!||||||||| !:!!||| !! ! !|||: PheProIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuT 457199 : TTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTAT : 457256 166 : isLeuIleValGluTyrPheValAspProSerLysTyrPheThrLeuIleLeuIleHi : 184 !!|||! !!.!||||||||||||||| !!.!||||||.!. !! !|||:!! || yrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHi 457257 : ACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCA : 457313 185 : sLeuThrIleSerIleCysLeuGlyValIleThrIleThrSerThrSerLeuMetLeu : 203 |:!!! !! !!!:!! :!!!.!!.!! !|||:!!|||:!!!.!..!! !:!:||| sIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeu 457314 : CATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTT : 457370 204 : LeuGlyIleGlyPheHisCysCysAlaLeuPheLysLeu : 216 :!! !! !! !.!.||| !|||!.!|||||||||||| IleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457371 : ATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr278 145 216 . KQ414815.1 457198 457411 + 139 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457199 457411 139 + . gene_id 2 ; sequence CbirOr278 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457199 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457199 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457199 457411 139 + . alignment_id 2 ; Query CbirOr278 ; Align 457199 146 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr278 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 148 -> 217 Target range: 448091 -> 448298 149 : IleIleAspValLeuLeuProLeuAsnLeuThrArgThrGlnGlyLeuHisLeuIleV : 168 ...:::|||:::|||:!!|||:!!|||:!!:!!! ! !!!.! !|||! !!!!:!!: PheLeuAspIleLeuMetProMetAsnValSerThrArgHisGluLeuProPheLeuI 448092 : tttctcgatattttaATGCCAATGAACGTATCTACACGGCACGAGCTACCCTTCCTAA : 448149 169 : alGluTyrPheValAspProSerLysTyrPheThrLeuIleLeuIleHisLeuThrIl : 187 !!:!!! !||| !|||! !..!|||!:!||| !! !||||||:!! !|||! !:! leGlnCysPheCysAspGlnAspLysPhePheHisTyrIleLeuValPheLeuIleVa 448150 : TTCAATGTTTCTGTGATCAAGATAAATTCTTCCACTATATATTAGTTTTCTTGATCGT : 448206 188 : eSerIleCysLeuGlyValIleThrIleThrSerThrSerLeuMetLeuLeuGlyIle : 206 ! !! ! !||||||! !! !..!:!! !:!!|||!!! !! ! !||| !.!! lLeuThrIleLeuGlyGlySerValValLeuAlaThrThrThrThrTyrLeuIlePhe 448207 : TCTCACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAACGACTTACTTGATATTC : 448263 207 : GlyPheHisCysCysAlaLeuPheLysLeuAla : 217 .!! |||||||||!.!|||||||||:!!||| SerGlnHisCysCysGlyLeuPheLysIleAla 448264 : AGTCAACATTGTTGTGGATTGTTCAAAATTGCA : 448298 vulgar: CbirOr278 148 217 . KQ414815.1 448091 448298 + 125 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448092 448298 125 + . gene_id 3 ; sequence CbirOr278 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448092 448298 . + . KQ414815.1 exonerate:protein2genome:local exon 448092 448298 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448092 448298 125 + . alignment_id 3 ; Query CbirOr278 ; Align 448092 149 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr278 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 340 -> 400 Target range: 487029 -> 487277 341 : TyrAsnLeuProTrpTyrIleAlaProLeuAsnValGlnLysLeuLeuIlePheLeuL : 360 ||||||! ! !||||||! ! !|||:!! ! ||||||:::|||:::.!!|||: TyrAsnSerGluTrpTyrArgIleProValAlaGluGlnLysValLeuLeuLeuLeuM 487030 : TACAATTCAGAATGGTACAGAATCCCTGTAGCGGAacaaaaagtattattacTCCTGA : 487087 361 : euGlnLysGlyThrLysThrPheTyrLeuSerLeuSerGlyLeuPheAspAlaSerTy : 379 !!|||!!..!! !||| ! ! :!! !|||.!!|||:!!.!! !||||||!: etGlnAsnSerLeuLysAspAspMetIleLeuLeuGlyGlyIleIleProAlaSerPh 487088 : TGCAAAATAGTTTAAAAGATGATATGATCCTACTTGGCGGAATTATTCCTGCATCTTT : 487144 380 : rGlnGlyPheThrSer >>>> Target Intron 1 >>>> LeuSerMetThrS : 389 !|||||||||:!! ! 68 bp :!!! ! |||| eGlnGlyPheSerLeu++ ++MetIleArgThrS 487145 : CCAGGGATTTTCACTGgt.........................agATGATTCGAACAT : 487242 390 : erIleSerTyrPheThrValLeuTyrSerIleGln : 400 ||.!!|||||||||! !||||||||||||.!!:!! erPheSerTyrPheMetValLeuTyrSerPheGlu 487243 : CCTTCTCGTATTTCATGGTACTTTATTCTTTCGAG : 487277 vulgar: CbirOr278 340 400 . KQ414815.1 487029 487277 + 122 M 44 132 5 0 2 I 0 64 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 487030 487277 122 + . gene_id 4 ; sequence CbirOr278 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 487030 487161 . + . KQ414815.1 exonerate:protein2genome:local exon 487030 487161 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 487162 487163 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 487162 487229 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 487228 487229 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 487230 487277 . + . KQ414815.1 exonerate:protein2genome:local exon 487230 487277 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 487030 487277 122 + . alignment_id 4 ; Query CbirOr278 ; Align 487030 341 132 ; Align 487230 385 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr278 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 340 -> 385 Target range: 441705 -> 441840 341 : TyrAsnLeuProTrpTyrIleAlaProLeuAsnValGlnLysLeuLeuIlePheLeuL : 360 ||||||! ! !!|||||| !!.!||||||!:!!.!||||||||||||:!:|||:!!: TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 361 : euGlnLysGlyThrLysThrPheTyrLeuSerLeuSerGlyLeuPheAspAlaSerTy : 379 !!..!|||.!!|||! !!! ! ! :!!!:!|||||||||:!!|||! ! !!!!!|| etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 380 : rGlnGlyPheThrSerLeu : 385 |:!!||||||:!!|||:!! rLysGlyPheSerSerVal 441821 : CAAAGGTTTTTCCTCGGTA : 441840 vulgar: CbirOr278 340 385 . KQ414815.1 441705 441840 + 118 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441840 118 + . gene_id 5 ; sequence CbirOr278 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441706 441840 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441840 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441840 118 + . alignment_id 5 ; Query CbirOr278 ; Align 441706 341 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr278 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 340 -> 385 Target range: 445817 -> 445952 341 : TyrAsnLeuProTrpTyrIleAlaProLeuAsnValGlnLysLeuLeuIlePheLeuL : 360 ||||||! ! !!|||||| !!.!||||||!:!!.!||||||||||||:!:|||:!!: TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 361 : euGlnLysGlyThrLysThrPheTyrLeuSerLeuSerGlyLeuPheAspAlaSerTy : 379 !!..!|||.!!|||! !!! ! ! :!!!:!|||||||||:!!|||! ! !!!!!|| etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 380 : rGlnGlyPheThrSerLeu : 385 |:!!||||||:!!|||:!! rLysGlyPheSerSerVal 445933 : CAAAGGTTTTTCCTCGGTA : 445952 vulgar: CbirOr278 340 385 . KQ414815.1 445817 445952 + 118 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 445952 118 + . gene_id 6 ; sequence CbirOr278 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445818 445952 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445952 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 445952 118 + . alignment_id 6 ; Query CbirOr278 ; Align 445818 341 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr278 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 148 -> 216 Target range: 482031 -> 482235 149 : IleIleAspValLeuLeuProLeuAsnLeuThrArgThrGlnGlyLeuHisLeuIleV : 168 :!!:!!||||||:!!:!!||||||||| !|||||||||!!. !!!!! :!! !: ValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerM 482032 : GTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAA : 482089 169 : alGluTyrPheValAspProSerLysTyrPheThrLeuIleLeuIleHisLeuThrIl : 187 !!|||||||||:!!|||! !..!||||||! !!!!||| !.!!|||! ! !.! etGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPh 482090 : TGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTT : 482146 188 : eSerIleCysLeuGlyValIleThrIleThrSerThrSerLeuMetLeuLeuGlyIle : 206 !|||.!! !:!!! !!.!! ! !|||..!.!!! !..! !:!!:!!:!! ! eSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrp 482147 : TTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGG : 482203 207 : GlyPheHisCysCysAlaLeuPheLysLeu : 216 ! |||..!...::!||||||! ||| LeuGluHisAlaAlaSerLeuPheThrLeu 482204 : CTTGAACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: CbirOr278 148 216 . KQ414815.1 482031 482235 + 100 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482032 482235 100 + . gene_id 7 ; sequence CbirOr278 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482032 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 482032 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482032 482235 100 + . alignment_id 7 ; Query CbirOr278 ; Align 482032 149 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr279 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 133 -> 218 Target range: 457159 -> 457414 134 : ThrCysIleAlaMetIleValThrThrMetIleHisValIleProIleThrLeuAspM : 153 |||! ! !!.! :!:|||! !|||! !:!:!!.:!!.!!|||||| !||||||! ThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspI 457160 : ACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACA : 457217 154 : etIleLeuProLeuAsnGluSerArgGluGlnGlyThrHisLeuMetValGluTyrPh : 172 !::!::!!|||||||||||||||||| ! ! !:!!|||! !.!|||||||| leValValProLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPh 457218 : TTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTT : 457274 173 : eIleAspProSerLysTyrHisIleLeuIleValSerHisLeuThrLeuTyrIleCys : 191 |:!!||| !!.!|||||| !! !|||:!!:!!|||:!!! ! !! !:!! eValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeu 457275 : TGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTG : 457331 192 : LeuGlyAlaIleGlyValMetAlaIleAlaLeuThrPheLeuSerPheGlyPheHisS : 211 :!!!.!|||! ! !:!!! |||! !! !! ! !.!!:!!!!! !! !.!.||| IleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisV 457332 : ATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACG : 457391 212 : erCysAlaLeuLeuLysLeuThr : 218 !|||!.!|||!!!||||||||| alCysGlyLeuPheLysLeuThr 457392 : TTTGTGGATTGTTCAAGCTTACT : 457414 vulgar: CbirOr279 133 218 . KQ414815.1 457159 457414 + 143 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457160 457414 143 + . gene_id 1 ; sequence CbirOr279 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457160 457414 . + . KQ414815.1 exonerate:protein2genome:local exon 457160 457414 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457160 457414 143 + . alignment_id 1 ; Query CbirOr279 ; Align 457160 134 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr279 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 128 -> 218 Target range: 467626 -> 467896 129 : PhePheSerThrPheThrCysIleAlaMetIleValThrThrMetIleHisValIleP : 148 |||||||||...!:! ! ! ! !!!:|||!.!..!! !:!::!!! !! PhePheSerValTyrLeuIleProIleIleIleAlaValIleLeuLeuProPheTyrA 467627 : tttttttcagtgTACTTAATTCCAATCATTATAGCCGTTATATTATTACCATTCTacg : 467684 149 : roIleThrLeuAspMetIleLeuProLeuAsnGluSerArgGluGlnGlyThrHisLe : 167 ||| ...::::::::: ! !!||||||! !||||||||| ! ! !! ! spIleIlePheAsnIleValThrSerLeuAsnValSerArgGluIleGluLeuProAl 467685 : atataattttcaatattgtaaCATCGTTGAACGTATCACGTGAGATTGAATTACCTGC : 467741 168 : uMetValGluTyrPheIleAspProSerLysTyrHisIleLeuIleValSerHisLeu : 186 ! :!!|||||||||! !||| !|||||||||:!! !:!!! !:!!! !|||:!! aAspLeuGluTyrPheThrAspGluSerLysTyrTyrProIleLysLeuLeuHisVal 467742 : TGATCTTGAGTACTTTACAGACGAAAGCAAGTATTATCCTATTAAACTGTTACATGTG : 467798 187 : ThrLeuTyrIleCysLeuGlyAlaIleGlyValMetAlaIleAlaLeuThrPheLeuS : 206 ..! !:!! ! ! !|||!.!! ! !|||!!: !|||! ! !|||!!.|||! ValSerHisAlaIleThrGlyValThrValValIlePheIleAspSerThrLeuLeuI 467799 : GTTAGTCATGCTATCACTGGAGTGACGGTTGTGATTTTCATTGATAGTACGTTGTTGA : 467858 207 : erPheGlyPheHisSerCysAlaLeuLeuLysLeuThr : 218 !||| ! :!!||||||||||||!!!||| !||| lePheLeuGlnTyrSerCysAlaLeuPheLysThrThr 467859 : TATTCCTCCAATATTCTTGTGCGCTCTTCAAAACGACC : 467896 vulgar: CbirOr279 128 218 . KQ414815.1 467626 467896 + 117 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 467627 467896 117 + . gene_id 2 ; sequence CbirOr279 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 467627 467896 . + . KQ414815.1 exonerate:protein2genome:local exon 467627 467896 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 467627 467896 117 + . alignment_id 2 ; Query CbirOr279 ; Align 467627 129 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr279 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 136 -> 217 Target range: 481992 -> 482235 137 : AlaMetIleValThrThrMetIleHisValIleProIleThrLeuAspMetIleLeuP : 156 :!!:!!:!::!! !! !:!! !|||:!! !.!!..!||||||:!:|||:!!| SerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValP 481993 : TCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTC : 482050 157 : roLeuAsnGluSerArgGluGlnGlyThrHisLeuMetValGluTyrPheIleAspPr : 175 |||||||||||!!!||| !!!. ! !! :!! :!!|||||||||||||||! roLeuAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGl 482051 : CTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCA : 482107 176 : oSerLysTyrHisIleLeuIleValSerHisLeuThrLeuTyrIleCysLeuGlyAla : 194 !..!|||||| :!!!!!|||..!! !|||! ! !!!!! !.!! !:!!! !||| nGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAla 482108 : GCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCA : 482164 195 : IleGlyValMetAlaIleAlaLeuThrPheLeuSerPheGlyPheHisSerCysAlaL : 214 ! !:!!:!:!.!|||! ! ! !.!!:!!! !!:: ! |||:!!...::!| ThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerL 482165 : ACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCT : 482224 215 : euLeuLysLeu : 217 ||!!!! ||| euPheThrLeu 482225 : TGTTCACCCTT : 482235 vulgar: CbirOr279 136 217 . KQ414815.1 481992 482235 + 106 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481993 482235 106 + . gene_id 3 ; sequence CbirOr279 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481993 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481993 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481993 482235 106 + . alignment_id 3 ; Query CbirOr279 ; Align 481993 137 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr286 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 225 Query range: 88 -> 213 Target range: 456822 -> 457411 89 : ValLysArgLeuLeuGluGlnIleArgAsnAspTrpGluLeuValLysAspLysLeuG : 108 :!!::!..!:!!! !!!:.!.||| !:!!||||||:!!! !:!!|||:!!! ! !| IleArgGluIleTyrAspAsnIleAlaAspAspTrpLysSerLeuLysAsnMetGluG 456823 : ATACGGGAGATTTACGACAATATCGCTGACGATTGGAAATCATTGAAGAACATGGAAG : 456880 109 : luIleAspIleIleLysLysTyrAlaGlySerValArgPheIleSerMetCysAlaLe : 127 |||||!::||||||:::|||||||||..!.!!! !||| .!!!!!:!:... ! luIleGluIleIleArgLysTyrAlaAsnGlyGlyArgArgPheThrLeuAlaIleAl 456881 : AAATCGagattattcgaaaatatgcGAACGGTGGCAGGAGATTTACACTTGCAATAGC : 456937 128 : u{V} >>>> Target Intron 1 >>>> {al}PheCysHisCysAspThrLeu : 135 !{:} 214 bp {!!}! ! !:!!|||! !.!!||| a{I}++ ++{le}SerThrTyrCysGlyAlaLeu 456938 : A{A}gt.........................ag{TT}TCTACTTATTGTGGCGCACTG : 457175 136 : CysTyrIleThrLeuGlnPheLeuProLeuIleLeuAspValIleLeuProLeuAsnG : 155 ! !! !|||||||||.!!!!!|||:!!:!!||||||:!!:!::!!|||||||||| ValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnG 457176 : GTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACG : 457235 156 : luSerArgSerLeuLysLeuIleValIleThrGluTyrPheValAsnArgGluLysTy : 174 |||||||| !!! !:!!||| !:!!! !.!!||||||||||||:!!! !:!!||||| luSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTy 457236 : AATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTA : 457292 175 : rLeuTrpLeuMetLeuLeuHisGluIleValAlaIleTyrLeuArgValIleThrIle : 193 |:!! ! !!!::!! !||| |||..!..!:!! :!! !!.!! !|||:!! rMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeu 457293 : TATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTA : 457349 194 : CysCysThrThrThrThrIleMetMetTyrIleLeuHisAlaCysAlaLeuPheLysV : 213 ..!!.! !:!! !:!!!!:! ! !!:!!||||||!.!|||!.!|||||||||: ThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysL 457350 : ACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGC : 457409 214 : al : 213 !! eu 457410 : TT : 457411 vulgar: CbirOr286 88 213 . KQ414815.1 456822 457411 + 225 M 39 117 S 0 1 5 0 2 I 0 210 3 0 2 S 1 2 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 456823 457411 225 + . gene_id 1 ; sequence CbirOr286 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 456823 456940 . + . KQ414815.1 exonerate:protein2genome:local exon 456823 456940 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 456941 456942 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 456941 457154 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457153 457154 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457155 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457155 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 456823 457411 225 + . alignment_id 1 ; Query CbirOr286 ; Align 456823 89 117 ; Align 457157 129 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr286 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 116 -> 239 Target range: 475479 -> 475848 117 : GlySerValArgPheIleSerMetCysAlaLeuValPheCysHisCysAspThrLeuC : 136 ...||| |||:::... ..! !|||.!. :!! ! !!!! AsnSerTyrPhePheValGlyAsnIleValThrValLeuValTyrProThrIlePheT 475480 : aattcttattttttcgttgggaatattgtTACAGTACTGGTATACCCAACAATATTCA : 475537 137 : ysTyrIleThrLeuGlnPheLeuProLeuIleLeuAspValIleLeuProLeuAsnGl : 155 ! ||| !|||! |||! ! !! !||||||||| !:!:|||||||||||||| hrMetIleLeuLeuLeuPheSerSerLysIleLeuAspSerLeuLeuProLeuAsnGl 475538 : CCATGATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTACCCCTGAACGA : 475594 156 : uSerArgSerLeuLysLeuIleValIleThrGluTyrPheValAsnArgGluLysTyr : 174 ||||||| !! ! !! !:!:::: |||||||||:::|||..!:!!|||||| uSerArgProSerTrpSerLeuIleArgIleGluTyrPheIleAsnGluGlnLysTyr 475595 : GTCTCGTCCTAGCTGGTCTCTGAtacgaatagaatatttcataaacGAACAGAAATAC : 475651 175 : LeuTrpLeuMetLeuLeuHisGluIleValAlaIleTyrLeuArgValIleThrIleC : 194 !!!!::|||! :!!:!!:!!:!!! !|||.!!||| !||| !! !! !||| ! PheTyrLeuSerValIleTyrGlnThrValThrIleLeuLeuPheGlyThrThrTyrV 475652 : TTTTATCTGAGCGTGATCTATCAGACTGTAACGATCCTTCTGTTTGGTACCACGTACG : 475711 195 : ysCysThrThrThrThrIleMetMetTyrIleLeuHisAlaCysAlaLeuPheLysVa : 213 ...||| !.!!! !.!!! |||!:::!:! !|||..! :::||||||::::: alAlaThrGluAlaIlePheThrMetTrpLeuGlnHisCysIleSerLeuPheGluIl 475712 : TAGCAACTGAAGCAATATTTACCATGTGGTTGCAACATTGCATaagtttatttgaaat : 475768 214 : lAlaSerTyrArgMetGluAsnAlaIleGlnGluAspMetLeuAlaMetCysAsnPro : 232 :... !!! !! ! ! ::: :::::: |||:::..!:!:|||!.! ! eValArg***ValThrTyrSerLeu***LysLysIleMetIleGlyLeuCysThrIle 475769 : tgttagGTAAGTGACGTAttctctgtaaaaaaaaataatgattgGTCTATGCACTATT : 475825 233 : ValGlnGluTyrLeuLeuTyr : 239 ||| ::: ||| ::: ValPheGlnLeuLeuTyrPhe 475826 : GTGTTTCagttattatatttt : 475848 vulgar: CbirOr286 116 239 . KQ414815.1 475479 475848 + 148 M 123 369 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475480 475848 148 + . gene_id 2 ; sequence CbirOr286 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475480 475848 . + . KQ414815.1 exonerate:protein2genome:local exon 475480 475848 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475480 475848 148 + . alignment_id 2 ; Query CbirOr286 ; Align 475480 117 369 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr286 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 334 -> 393 Target range: 445817 -> 446067 335 : TyrAsnGlyLeuTrpTyrAlaAlaProLeuArgAlaGlnLysLeuIleLeuPheValM : 354 ||||||..! !||||||..!!.!||||||!!!||||||||||||:!!||||||:!!| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 355 : etGlnArgAlaIleValLysValAsnLeuThrPheGlyAsnIlePheIleLeuSerLe : 373 ||..!!:!::!! :!! ! !!!.:!!!.!.!!..!..!|||||| !! !!!!! etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 374 : uGluGlyPheValThr >>>> Target Intron 1 >>>> LeuAlaSerLysA : 383 !:!!|||||| !:!! 73 bp :!! !|||! : rLysGlyPheSerSer++ ++MetIleSerThrS 445933 : CAAAGGTTTTTCCTCGgt.........................agATGATAAGCACTT : 446035 384 : laValSerTyrPheThrValIleTyrSerThr : 393 !! !!|||||| !!|||!.!|||||||||||| erPheSerTyrValThrAlaIleTyrSerThr 446036 : CTTTCTCGTATGTCACAGCGATATATTCGACT : 446067 vulgar: CbirOr286 334 393 . KQ414815.1 445817 446067 + 128 M 44 132 5 0 2 I 0 69 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 446067 128 + . gene_id 3 ; sequence CbirOr286 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 445818 445949 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445949 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445950 445951 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445950 446022 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 446021 446022 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 446023 446067 . + . KQ414815.1 exonerate:protein2genome:local exon 446023 446067 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 446067 128 + . alignment_id 3 ; Query CbirOr286 ; Align 445818 335 132 ; Align 446023 379 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr286 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 134 -> 212 Target range: 467656 -> 467890 135 : LeuCysTyrIleThrLeuGlnPheLeuProLeuIleLeuAspValIleLeuProLeuA : 154 :!!..! !||| !|||! !|||! :::|||...::::::::: ! !!|||| IleAlaValIleLeuLeuProPheTyrAspIleIlePheAsnIleValThrSerLeuA 467657 : ATAGCCGTTATATTATTACCATTCTacgatataattttcaatattgtaaCATCGTTGA : 467714 155 : snGluSerArgSerLeuLysLeuIleValIleThrGluTyrPheValAsnArgGluLy : 173 ||! !||||||..!:!!:!!||| !!.! ! !|||||||||..!:!!..!...|| snValSerArgGluIleGluLeuProAlaAspLeuGluTyrPheThrAspGluSerLy 467715 : ACGTATCACGTGAGATTGAATTACCTGCTGATCTTGAGTACTTTACAGACGAAAGCAA : 467771 174 : sTyrLeuTrpLeuMetLeuLeuHisGluIleValAlaIleTyrLeuArgValIleThr : 192 ||||! ! :!!! |||||||||! !:!! ! ! ! ! ! !!|||! ..! sTyrTyrProIleLysLeuLeuHisValValSerHisAlaIleThrGlyValThrVal 467772 : GTATTATCCTATTAAACTGTTACATGTGGTTAGTCATGCTATCACTGGAGTGACGGTT : 467828 193 : IleCysCysThrThrThrThrIleMetMetTyrIleLeuHisAlaCysAlaLeuPheL : 212 :!: !! !! ! !!:!|||:!::!!!!:!:!:!!! !:!!:!!||||||||||||| ValIlePheIleAspSerThrLeuLeuIlePheLeuGlnTyrSerCysAlaLeuPheL 467829 : GTGATTTTCATTGATAGTACGTTGTTGATATTCCTCCAATATTCTTGTGCGCTCTTCA : 467888 213 : ys : 212 || ys 467889 : AA : 467890 vulgar: CbirOr286 134 212 . KQ414815.1 467656 467890 + 120 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 467657 467890 120 + . gene_id 4 ; sequence CbirOr286 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 467657 467890 . + . KQ414815.1 exonerate:protein2genome:local exon 467657 467890 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 467657 467890 120 + . alignment_id 4 ; Query CbirOr286 ; Align 467657 135 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr286 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 132 -> 211 Target range: 481992 -> 482229 133 : AspThrLeuCysTyrIleThrLeuGlnPheLeuProLeuIleLeuAspValIleLeuP : 152 .....!||| ||| !! !!!..!.! ! !!!!:!!||||||||||||:!!| SerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValP 481993 : TCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTC : 482050 153 : roLeuAsnGluSerArgSerLeuLysLeuIleValIleThrGluTyrPheValAsnAr : 171 |||||||||||!!!|||!!!! !:!!!!! !||| !! !|||||||||:!!:!!!: roLeuAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGl 482051 : CTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCA : 482107 172 : gGluLysTyrLeuTrpLeuMetLeuLeuHisGluIleValAlaIleTyrLeuArgVal : 190 !:!!||||||! ! !!!!!: !!!!|||:!! !!:!!.!! !:!! !!.! nGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAla 482108 : GCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCA : 482164 191 : IleThrIleCysCysThrThrThrThrIleMetMetTyrIleLeuHisAlaCysAlaL : 210 ! ! !||| ! ! ! ! !||| !|||:!:|||!:::!! !||||||...::!| ThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerL 482165 : ACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCT : 482224 211 : euPhe : 211 ||||| euPhe 482225 : TGTTC : 482229 vulgar: CbirOr286 132 211 . KQ414815.1 481992 482229 + 119 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481993 482229 119 + . gene_id 5 ; sequence CbirOr286 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481993 482229 . + . KQ414815.1 exonerate:protein2genome:local exon 481993 482229 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481993 482229 119 + . alignment_id 5 ; Query CbirOr286 ; Align 481993 133 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr286 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 139 -> 213 Target range: 464615 -> 464840 140 : LeuGlnPheLeuProLeuIleLeuAspValIleLeuProLeuAsnGluSerArgSerL : 159 |||:!! ! |||||| !||||||||||||:!! !|||||||||||||||||||||! LeuGluValLeuProAspIleLeuAspValValAlaProLeuAsnGluSerArgSerH 464616 : CTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATGAATCTCGTTCTC : 464673 160 : euLysLeuIleValIleThrGluTyrPheValAsnArgGluLysTyrLeuTrpLeuMe : 178 !:!!! !:!!:!!! !.!!|||!:!|||:!!!.! !.....! !!:::!!:! isGlnTyrLeuIleThrAlaGluPhePheIleThrAspSerSerProAsnTyrIleVa 464674 : ATCAATACTTAATTACCGCGGAATTTTTCATCACTGATAGTTCGCCGAATTATATCGT : 464730 179 : t<->LeuLeuHisGluIleValAlaIleTyrLeuArgValIleThrIleCysCysThr : 196 : ! !:!! ! ! !:!!.!!:!! !:!! !!|||! |||||| !..!:!! lThrCysValGlyThrAspIleThrLeuIleMetGlyValThrThrIleIleAlaSer 464731 : AACTTGTGTTGGTACGGATATTACTCTTATCATGGGAGTCACGACAATAATTGCCTCC : 464787 197 : ThrThrThrIleMetMetTyrIleLeuHisAlaCysAlaLeuPheLysVal : 213 !||| !! !.!.:!!! :!:! !||| !||||||:!!||||||:!! GluThrPheThrPheLeuLeuLeuGlnHisIleCysAlaMetPheLysIle 464788 : GAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAATGTTCAAAATC : 464840 vulgar: CbirOr286 139 213 . KQ414815.1 464615 464840 + 112 M 39 117 G 0 3 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464616 464840 112 + . gene_id 6 ; sequence CbirOr286 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464616 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464616 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464616 464840 112 + . alignment_id 6 ; Query CbirOr286 ; Align 464616 140 117 ; Align 464736 179 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr286 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 334 -> 376 Target range: 441705 -> 441831 335 : TyrAsnGlyLeuTrpTyrAlaAlaProLeuArgAlaGlnLysLeuIleLeuPheValM : 354 ||||||..! !||||||..!!.!||||||!!!||||||||||||:!!||||||:!!| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 355 : etGlnArgAlaIleValLysValAsnLeuThrPheGlyAsnIlePheIleLeuSerLe : 373 ||..!!:!::!! :!! ! !!!.:!!!.!.!!..!..!|||||| !! !!!!! etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 374 : uGluGlyPhe : 376 !:!!|||||| rLysGlyPhe 441821 : CAAAGGTTTT : 441831 vulgar: CbirOr286 334 376 . KQ414815.1 441705 441831 + 100 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441831 100 + . gene_id 7 ; sequence CbirOr286 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441706 441831 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441831 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441831 100 + . alignment_id 7 ; Query CbirOr286 ; Align 441706 335 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr263 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 124 -> 213 Target range: 485659 -> 485926 125 : IleThrCysIlePheIleIleLeuAlaIlePheValLeuAlaIlePheGluCysArgS : 144 |||! !...:!!.!!||| !! !:!!:!!.!!|||||| !:!! ! !! !!.!! IleIleAlaValIleIleGlyProSerLeuLeuValLeuIleLeuGlyIlePheAsnA 485660 : ATTATTGCAGTAATTATCGGTCCATCGTTACTTGTGCTGATTCTTGGTATATTTAACA : 485717 145 : erValIleLeuAspIleIleValProMetAsnGlnSerArgProLeuLysValGluIl : 163 :! !||||||||||||:!::!!|||:!!||| ! !!!||||||! !! !:!! || snSerIleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIl 485718 : ACAGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTAT : 485774 164 : eProPheGluPhePheValAspLysGluArgTyrPhePheLeuHisLeuValGlnGlu : 182 | !! ||| !|||||||||:!!:!!!:!||||||!:!! ! ! !!.!!!.! eAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisVal 485775 : AAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTT : 485831 183 : IleValGlyAlaAlaIleGlyIleSerSerIleSerThrThrPheLeuPheLeuAlaT : 202 :!!:!! !!.! !|||||| ! ! !:!! !!:!||| :::...::: . ValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetA 485832 : GTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatgg : 485891 203 : hrIleGlyLysHisCysCysAlaThrTyrLysIle : 213 !!||| !:!!||| !|||!.! !|||! !||| laIleIleGlnHisThrCysGlyLeuTyrThrIle 485892 : CGATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr263 124 213 . KQ414815.1 485659 485926 + 124 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485660 485926 124 + . gene_id 1 ; sequence CbirOr263 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485660 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485660 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485660 485926 124 + . alignment_id 1 ; Query CbirOr263 ; Align 485660 125 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr263 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 134 -> 213 Target range: 457174 -> 457411 135 : PheValLeuAlaIlePheGluCysArgSerValIleLeuAspIleIleValProMetA : 154 .!.|||:!!.!!! !!.:!! ! ! !!:!!:!!|||||||||:!:||||||:!!| LeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuA 457175 : CTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGA : 457232 155 : snGlnSerArgProLeuLysValGluIleProPheGluPhePheValAspLysGluAr : 173 ||:!!|||||||||! !:!!:!! ! :!! !! |||!:!|||||||||! !:!!!: snGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLy 457233 : ACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAA : 457289 174 : gTyrPhePheLeuHisLeuValGlnGluIleValGlyAlaAlaIleGlyIleSerSer : 192 !|||.!. !! ! !:!!!.!!!. |||..! !! ! !|||!.! !!!!!!! sTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThr 457290 : GTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACG : 457346 193 : IleSerThrThrPheLeuPheLeuAlaThrIleGlyLysHisCysCysAlaThrTyrL : 212 :!!!!!.!!!.! ! !!!.||| !|||! !! ! !||| !|||!.! !!:!| LeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheL 457347 : TTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCA : 457406 213 : ysIle : 213 ||:!! ysLeu 457407 : AGCTT : 457411 vulgar: CbirOr263 134 213 . KQ414815.1 457174 457411 + 113 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457175 457411 113 + . gene_id 2 ; sequence CbirOr263 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457175 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457175 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457175 457411 113 + . alignment_id 2 ; Query CbirOr263 ; Align 457175 135 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr263 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 328 -> 377 Target range: 472689 -> 472839 329 : IlePheLysAlaThrTyrAsnThrPheTrpTyrValAlaProLeuProIleGlnLysL : 348 |||.!!... !! !||||||:!! |||||| !:!!||||||||||||||||||| IleLeuSerLeuArgTyrAsnSerGluTrpTyrCysSerProLeuProIleGlnLysL 472690 : ATCCTTTCTCTCAGGTATAATTCTGAATGGTATTGCTCGCCGTTGCCAATACAAAAAT : 472747 349 : euLeu<->LeuIleMetGlnLysSerIleLysAspHisLysLeuIleValGlyGlyLe : 366 ||||| !!!||||||||| !!!!|||!!. ::: ......::: ||| euLeuHisPheIleMetGlnGlyArgIleAsnLeuAsnIlePhePheMetTyrGlyTh 472748 : TGCTACATTTTATCATGCAGGGAAGGATAAATctgaacatattttttatgtacGGTAC : 472804 367 : uPheThrProSerIleGluGlyPheSerThrLeu : 377 !|||..!||||||!!:|||||||||.!!.!!:!! rPheValProSerMetGluGlyPheGlyAlaVal 472805 : ATTCGTACCTTCGATGGAAGGTTTTGGCGCGGTA : 472839 vulgar: CbirOr263 328 377 . KQ414815.1 472689 472839 + 101 M 21 63 G 0 3 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 472690 472839 101 + . gene_id 3 ; sequence CbirOr263 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 472690 472839 . + . KQ414815.1 exonerate:protein2genome:local exon 472690 472839 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 472690 472839 101 + . alignment_id 3 ; Query CbirOr263 ; Align 472690 329 63 ; Align 472756 350 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr273CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 123 -> 212 Target range: 457144 -> 457411 124 : IleValLeuIleLeuValIleSerGlyValSerValPheIleIlePheGluCysIleP : 143 !!::!! !:!!! !..! !!!!|||!.! !|||.!!! !! !!.:!! !.!!| MetIleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheP 457145 : ATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTC : 457202 144 : roValPheLeuAspValPheLeuProLeuAsnGluSerArgLeuArgLysThrGluIl : 162 ||:!!!!.||||||:!! ! :!!||||||||||||||||||! ! !!:!! ! ! :! roIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrLe 457203 : CGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCT : 457259 163 : eSerPheGluTyrPheLeuAspAspGlnGlnTyrPhePheLeuTyrValIleHisGlu : 181 !!!! |||||||||:!!||| :!!:!!|||.!. !! ! !:!! ||| uThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIle 457260 : TACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATT : 457316 182 : PheIleGlyLeuLeuIleGlyLeuSerSerMetSerIleThrGlySerTyrLeuLeuV : 201 .!!! !!|||||||||!.! !!!!!!!:!:!!! !!.!! !|||! |||:!!. IleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleT 457317 : ATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAA : 457376 202 : alIleAlaThrHisThrCysAlaValTyrLysVal : 212 .!! !!.! !|||..!|||!.!:!!!:!|||:!! hrAsnValLeuHisValCysGlyLeuPheLysLeu 457377 : CGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr273CTE 123 212 . KQ414815.1 457144 457411 + 132 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457145 457411 132 + . gene_id 1 ; sequence CbirOr273CTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457145 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457145 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457145 457411 132 + . alignment_id 1 ; Query CbirOr273CTE ; Align 457145 124 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr273CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 123 -> 212 Target range: 475503 -> 475770 124 : IleValLeuIleLeuValIleSerGlyValSerValPheIleIlePheGluCysIleP : 143 |||||| !:!!|||||| ! !! !:!!! !..!.!.|||:!:.!! ! ! IleValThrValLeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerS 475504 : attgtTACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGT : 475561 144 : roValPheLeuAspValPheLeuProLeuAsnGluSerArgLeuArgLysThrGluIl : 162 !! !.!!|||||| !!!.|||||||||||||||||||||! !!!! !:!! !|| erLysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIl 475562 : CTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAt : 475618 163 : eSerPheGluTyrPheLeuAspAspGlnGlnTyrPhePheLeuTyrValIleHisGlu : 181 | ...|||||||||::::::!!:|||:!!||||||!:!||| !||||||:!!:!! eArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGln 475619 : acgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAG : 475675 182 : PheIleGlyLeuLeuIleGlyLeuSerSerMetSerIleThrGlySerTyrLeuLeuV : 201 !:!! !:!!|||:!: ! !!!!!!! ! !|||! !:!! !!! !: ThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrM 475676 : ACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCA : 475735 202 : alIleAlaThrHisThrCysAlaValTyrLysVal : 212 !! ! !||| ! ::::::::::::::: etTrpLeuGlnHisCysIleSerLeuPheGluIle 475736 : TGTGGTTGCAACATTGCATaagtttatttgaaatt : 475770 vulgar: CbirOr273CTE 123 212 . KQ414815.1 475503 475770 + 118 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475504 475770 118 + . gene_id 2 ; sequence CbirOr273CTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475504 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475504 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475504 475770 118 + . alignment_id 2 ; Query CbirOr273CTE ; Align 475504 124 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr273CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 124 -> 187 Target range: 481971 -> 482160 125 : ValLeuIleLeuValIleSerGlyValSerValPheIleIlePheGluCysIleProV : 144 ::: |||:!! ! !!..!|||! !:!!.!.|||:!:! !.!. ! IleThrAlaLeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerP 481972 : attacagcGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTT : 482029 145 : alPheLeuAspValPheLeuProLeuAsnGluSerArgLeuArgLysThrGluIleSe : 163 !! !!|||||||||.!!:!!||||||||||||!!!||| !!.!:!! ! !:!!|| heValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSe 482030 : TCGTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATC : 482086 164 : rPheGluTyrPheLeuAspAspGlnGlnTyrPhePheLeuTyrValIleHisGluPhe : 182 |.!.|||||||||:!!|||.!.|||:!!|||! .!!!!! !..!.!!|||:!!!:: rMetGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrp 482087 : AATGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGG : 482143 183 : IleGlyLeuLeuIle : 187 .!!..!!!!|||:!! PheSerPheLeuVal 482144 : TTTTCCTTTCTCGTA : 482160 vulgar: CbirOr273CTE 124 187 . KQ414815.1 481971 482160 + 110 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481972 482160 110 + . gene_id 3 ; sequence CbirOr273CTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481972 482160 . + . KQ414815.1 exonerate:protein2genome:local exon 481972 482160 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481972 482160 110 + . alignment_id 3 ; Query CbirOr273CTE ; Align 481972 125 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr273CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 120 -> 212 Target range: 464561 -> 464840 121 : PheThrLeuIleValLeuIleLeuValIleSerGlyValSerValPheIleIlePheG : 140 !:! !|||! !:!!! !:!:! ! !!||| !!! !:!! ! !!.!! !:!!.!!| TyrPheLeuAsnIleProValCysPheIleProValIleLeuPheIleCysLeuLeuG 464562 : TACTTCCTGAATATTCCAGTGTGCTTCATTCCCGTTATACTGTTCATCTGTTTACTCG : 464619 141 : luCysIleProValPheLeuAspValPheLeuProLeuAsnGluSerArgLeuArgLy : 159 || :!:|||! !.!!||||||||| !! !||||||||||||||||||! !!.!:! luValLeuProAspIleLeuAspValValAlaProLeuAsnGluSerArgSerHisGl 464620 : AAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATGAATCTCGTTCTCATCA : 464676 160 : sThrGluIleSerPheGluTyrPheLeu<->AspAspGlnGlnTyrPhePheLeuTyr : 177 ! ! !|||!!! |||!:!|||:!! |||..!..!! ! !!!:!.!!:!! ! nTyrLeuIleThrAlaGluPhePheIleThrAspSerSerProAsnTyrIleValThr 464677 : ATACTTAATTACCGCGGAATTTTTCATCACTGATAGTTCGCCGAATTATATCGTAACT : 464733 178 : ValIleHisGluPheIleGlyLeuLeuIleGlyLeuSerSerMetSerIleThrGlyS : 197 !:!! ! ! !||| !|||:!!!!:|||:!!!!!!!!!!:! ! !:!!! !! CysValGlyThrAspIleThrLeuIleMetGlyValThrThrIleIleAlaSerGluT 464734 : TGTGTTGGTACGGATATTACTCTTATCATGGGAGTCACGACAATAATTGCCTCCGAAA : 464793 198 : erTyrLeuLeuValIleAlaThrHisThrCysAlaValTyrLysVal : 212 !!!:! !!!!:!!:!: ! !|||! !||||||:!!!:!|||:!! hrPheThrPheLeuLeuLeuGlnHisIleCysAlaMetPheLysIle 464794 : CGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAATGTTCAAAATC : 464840 vulgar: CbirOr273CTE 120 212 . KQ414815.1 464561 464840 + 104 M 48 144 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464562 464840 104 + . gene_id 4 ; sequence CbirOr273CTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464562 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464562 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464562 464840 104 + . alignment_id 4 ; Query CbirOr273CTE ; Align 464562 121 144 ; Align 464709 169 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr266 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 129 -> 214 Target range: 464585 -> 464840 130 : PheValIleThrSerPheValLeuThrLeuMetGluSerThrProMetIleLeuAspV : 149 |||:!! !..!! !.!. !!:!! !|||:!:||| ! !||| |||||||||| PheIleProValIleLeuPheIleCysLeuLeuGluValLeuProAspIleLeuAspV 464586 : TTCATTCCCGTTATACTGTTCATCTGTTTACTCGAAGTATTGCCAGATATTCTCGACG : 464643 150 : alIleAlaProMetAsnAspSerArgProArgAsnLeuGluLeuAspPheGluPhePh : 168 ||:!!||||||:!:|||!!:|||||| !!!.!.!.! ! !:!! ! |||||||| alValAlaProLeuAsnGluSerArgSerHisGlnTyrLeuIleThrAlaGluPhePh 464644 : TGGTTGCGCCCCTCAATGAATCTCGTTCTCATCAATACTTAATTACCGCGGAATTTTT : 464700 169 : eIlePheAsnGluGluGlnTyrPhePhePheLeuLeuLeuLeuGluGlyAlaAlaAla : 187 |||| !:!!.....!! ! !!!:!.!! ! !! !:!! ! !! ! !.!! ! eIleThrAspSerSerProAsnTyrIleValThrCysValGlyThrAspIleThrLeu 464701 : CATCACTGATAGTTCGCCGAATTATATCGTAACTTGTGTTGGTACGGATATTACTCTT : 464757 188 : GlyPheGlyValTrpSerLeuLeuAlaIlePheThrPhePheThrThrValMetLysH : 207 !.!.|||||| !!!!:!!:!!||| ! |||||| ! ! !:!!:!!:!!| IleMetGlyValThrThrIleIleAlaSerGluThrPheThrPheLeuLeuLeuGlnH 464758 : ATCATGGGAGTCACGACAATAATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGCAAC : 464817 208 : isSerCysAlaThrTyrLysIle : 214 ||! !||||||! !!:!|||||| isIleCysAlaMetPheLysIle 464818 : ATATCTGCGCAATGTTCAAAATC : 464840 vulgar: CbirOr266 129 214 . KQ414815.1 464585 464840 + 119 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464586 464840 119 + . gene_id 1 ; sequence CbirOr266 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464586 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464586 464840 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464586 464840 119 + . alignment_id 1 ; Query CbirOr266 ; Align 464586 130 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr274 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 135 -> 214 Target range: 475533 -> 475770 136 : PheValLeuIleSerPheGluSerThrSerValIleLeuAspAlaPheIleProIleA : 155 |||..!:!!|||! !.!! ! !:!!||| !|||||||||:!!!!.:!!|||:!:| PheThrMetIleLeuLeuLeuPheSerSerLysIleLeuAspSerLeuLeuProLeuA 475534 : TTCACCATGATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTACCCCTGA : 475591 156 : snGluSerArgProArgLysLeuGluValAspPheGluLeuPheValAspGlnGluGl : 174 ||||||||||||||!!! !! ! !::: ...||| |||:::::::!!:!!:! snGluSerArgProSerTrpSerLeuIleArgIleGluTyrPheIleAsnGluGlnLy 475592 : ACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaatagaatatttcataaacGAACAGAA : 475648 175 : uTyrPhePheLeuTyrLeuIleGlnGluMetLeuGlyValGlyIleGlyMetCysSer : 193 !||||||!:!||| !:!!||| ! :!!! :!! !:!! !:!: ! !!!! sTyrPheTyrLeuSerValIleTyrGlnThrValThrIleLeuLeuPheGlyThrThr 475649 : ATACTTTTATCTGAGCGTGATCTATCAGACTGTAACGATCCTTCTGTTTGGTACCACG : 475705 194 : ValIleAlaThrGlyThrPheLeuAlaThrIleGlyLysHisCysCysAlaThrTyrL : 213 !:!!||||||! !.!!.!.!!!.!!! ! !:!!|||||| ::: :::: TyrValAlaThrGluAlaIlePheThrMetTrpLeuGlnHisCysIleSerLeuPheG 475706 : TACGTAGCAACTGAAGCAATATTTACCATGTGGTTGCAACATTGCATaagtttatttg : 475765 214 : ysIle : 214 ::||| luIle 475766 : aaatt : 475770 vulgar: CbirOr274 135 214 . KQ414815.1 475533 475770 + 115 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475534 475770 115 + . gene_id 1 ; sequence CbirOr274 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475534 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475534 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475534 475770 115 + . alignment_id 1 ; Query CbirOr274 ; Align 475534 136 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr274 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 128 -> 214 Target range: 457153 -> 457411 129 : IleThrLeuIleValGlySerPheValLeuIleSerPheGluSerThrSerValIleL : 148 :!!:!! ! ! !|||:!!.!.|||:!!! !!!!!!.:!! ! ! !!:!!:!!| ValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuL 457154 : GTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTAC : 457211 149 : euAspAlaPheIleProIleAsnGluSerArgProArgLysLeuGluValAspPheGl : 167 ||||| ! ! :!!|||:!:||||||||||||||| !!:!!||| ! :!! || euAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaGl 457212 : TCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGA : 457268 168 : uLeuPheValAspGlnGluGluTyrPhePheLeuTyrLeuIleGlnGluMetLeuGly : 186 |! !|||||||||..!:!!:!!|||.!. !! ! !:!! !!. !!: ! !! uTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCys 457269 : ATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGC : 457325 187 : ValGlyIleGlyMetCysSerValIleAlaThrGlyThrPheLeuAlaThrIleGlyL : 206 :!! !|||!.! !!!!:!!! !|||!.!! !:!!!!.||| !|||! !! ! LeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValL 457326 : CTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTAC : 457385 207 : ysHisCysCysAlaThrTyrLysIle : 214 !||| !|||!.! !!:!|||:!! euHisValCysGlyLeuPheLysLeu 457386 : TGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr274 128 214 . KQ414815.1 457153 457411 + 110 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457154 457411 110 + . gene_id 2 ; sequence CbirOr274 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457154 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457154 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457154 457411 110 + . alignment_id 2 ; Query CbirOr274 ; Align 457154 129 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr274 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 334 -> 379 Target range: 469217 -> 469358 335 : TyrAspThrLeuTrpTyrValAlaProLeuProIleGlnLysLeuPheLeuIleMet< : 354 |||:!!!:!|||||||||:!!|||||| !|||:!!::!||||||.!.|||! !||| TyrAsnSerLeuTrpTyrIleAlaProThrProValArgLysLeuLeuLeuThrMetM 469218 : TACAATAGTCTATGGTATATAGCACCAACGCCTGTAAGGAAATTACTATTAACCATGA : 469275 355 : -><->GlnLysSerIleGlnAsnHisLysLeuValMetGlyGlyLeuPheValLeuSe : 371 |||!!. !! !|||..! ! !:!!||||||||||||!:!:!! !!: etLeuGlnAsnValArgGlnArgValPheLysLeuMetGlyGlyLeuTyrIleThrAs 469276 : TGCTGCAAAATGTAAGACAGCGCGTTTTCAAGTTAATGGGAGGATTGTATATAACTAA : 469332 372 : rIleGluGlyPheSerThrLeuIle : 379 !|||||||||||||||! !:!!||| nIleGluGlyPheSerMetValIle 469333 : TATCGAAGGTTTTTCCATGGTAATC : 469358 vulgar: CbirOr274 334 379 . KQ414815.1 469217 469358 + 100 M 19 57 G 0 6 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 469218 469358 100 + . gene_id 3 ; sequence CbirOr274 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 469218 469358 . + . KQ414815.1 exonerate:protein2genome:local exon 469218 469358 . + . insertions 6 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 469218 469358 100 + . alignment_id 3 ; Query CbirOr274 ; Align 469218 335 57 ; Align 469281 354 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr272PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 97 -> 175 Target range: 457180 -> 457414 98 : LeuLeuIleValGluLeuIleProValIleLeuAspThrValValProIleAsnGluS : 117 :!! !! :!!:!!|||.!!|||:!!:!!||||||! !|||||||||:!:||||||| IleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluS 457181 : ATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAAT : 457238 118 : erArgGlnArgLysLeuGlnIleAspPheGluPhePheIleAspGluGluLysTyrPh : 136 |||||! !!:!!||| ! :!! |||!:!|||:!!||| !:!!||||||.! erArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMe 457239 : CACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATAT : 457295 137 : eTyrValTyrLeuIleHisGluIleThrValValLeuIleGlyValPheThrMetLeu : 155 .:!! ! !:!! ||| |||||| !:!!||||||!.!!.! !|||:!: ! tHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThr 457296 : GCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACA : 457352 156 : AlaThrGlyThrLeuProIleAlaPhePheArgHisCysCysAlaIleCysLysIleS : 175 |||!.!! !:!!|||! !|||.!! ! ! ! !||| !|||!.!:!:! !|||:!!! AlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeuT 457353 : GCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTTA : 457412 176 : er : 175 !! hr 457413 : CT : 457414 vulgar: CbirOr272PI 97 175 . KQ414815.1 457180 457414 + 151 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457181 457414 151 + . gene_id 1 ; sequence CbirOr272PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457181 457414 . + . KQ414815.1 exonerate:protein2genome:local exon 457181 457414 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457181 457414 151 + . alignment_id 1 ; Query CbirOr272PI ; Align 457181 98 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr272PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 81 -> 174 Target range: 475491 -> 475770 82 : PheTyrPheAsnAlaLysGluValLeuPheSerPheSerIlePhePheLeuLeuIleV : 101 ||| ||| !|||||| ! ! ! !!!|||||| !:!!:!!:!:: PheValGlyAsnIleValThrValLeuValTyrProThrIlePheThrMetIleLeuL 475492 : ttcgttgggaatattgtTACAGTACTGGTATACCCAACAATATTCACCATGATATTGC : 475549 102 : alGluLeuIleProValIleLeuAspThrValValProIleAsnGluSerArgGlnAr : 120 !! !!! !! !|||||||||:!!:!!:!!|||:!:||||||||||||! !! euLeuPheSerSerLysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSe 475550 : TTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAG : 475606 121 : gLysLeuGlnIleAspPheGluPhePheIleAspGluGluLysTyrPheTyrValTyr : 139 ! !! !! !||| ...|||:::||||||:::|||:!!||||||||||||:!! ! rTrpSerLeuIleArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSer 475607 : CTGGTCTCTGAtacgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGC : 475663 140 : LeuIleHisGluIleThrValValLeuIleGlyValPheThrMetLeuAlaThrGlyT : 159 :!!|||:!!:!!! !..!..!:!!|||:!: !! ! !||| :!!||||||! !. ValIleTyrGlnThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluA 475664 : GTGATCTATCAGACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAG : 475723 160 : hrLeuProIleAlaPhePheArgHisCysCysAlaIleCysLysIle : 174 !!:!! !! ! !!::!!.!:!|||||| :::::: :::||| laIlePheThrMetTrpLeuGlnHisCysIleSerLeuPheGluIle 475724 : CAATATTTACCATGTGGTTGCAACATTGCATaagtttatttgaaatt : 475770 vulgar: CbirOr272PI 81 174 . KQ414815.1 475491 475770 + 143 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475492 475770 143 + . gene_id 2 ; sequence CbirOr272PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475492 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475492 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475492 475770 143 + . alignment_id 2 ; Query CbirOr272PI ; Align 475492 82 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr272PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 80 -> 175 Target range: 464555 -> 464843 81 : SerPheTyrPheAsnAlaLysGluValLeuPheSerPheSerIlePhePheLeuLeuI : 100 ||| |||||| !! !|||! !|||! ! ! !|||.!.|||:!!! !: SerArgTyrPheLeuAsnIleProValCysPheIleProValIleLeuPheIleCysL 464556 : TCACGATACTTCCTGAATATTCCAGTGTGCTTCATTCCCGTTATACTGTTCATCTGTT : 464613 101 : leValGluLeuIleProValIleLeuAspThrValValProIleAsnGluSerArgGl : 119 !!:!!|||:!!:!:|||! !|||||||||..!|||!.!|||:!!||||||||||||.. euLeuGluValLeuProAspIleLeuAspValValAlaProLeuAsnGluSerArgSe 464614 : TACTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATGAATCTCGTTC : 464670 120 : nArgLysLeuGlnIleAspPheGluPhePheIle<->AspGluGluLysTyrPheTyr : 137 .!.!:!!! ! !||| ! |||||||||||| |||.....! ! !!!:! ! rHisGlnTyrLeuIleThrAlaGluPhePheIleThrAspSerSerProAsnTyrIle 464671 : TCATCAATACTTAATTACCGCGGAATTTTTCATCACTGATAGTTCGCCGAATTATATC : 464727 138 : ValTyrLeuIleHisGluIleThrValValLeuIleGlyValPheThrMetLeuAlaT : 157 ||| !! !:!! ! ! !! !..!:!!:!!!!:|||||| |||!!::!!|||: ValThrCysValGlyThrAspIleThrLeuIleMetGlyValThrThrIleIleAlaS 464728 : GTAACTTGTGTTGGTACGGATATTACTCTTATCATGGGAGTCACGACAATAATTGCCT : 464787 158 : hrGlyThrLeuProIleAlaPhePheArgHisCysCysAlaIleCysLysIleSer : 175 !!! !|||!!! !!.!! !!!..!.!:!||| !||||||!!:! !||||||!!! erGluThrPheThrPheLeuLeuLeuGlnHisIleCysAlaMetPheLysIleThr 464788 : CCGAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAATGTTCAAAATCACA : 464843 vulgar: CbirOr272PI 80 175 . KQ414815.1 464555 464843 + 139 M 50 150 G 0 3 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464556 464843 139 + . gene_id 3 ; sequence CbirOr272PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464556 464843 . + . KQ414815.1 exonerate:protein2genome:local exon 464556 464843 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464556 464843 139 + . alignment_id 3 ; Query CbirOr272PI ; Align 464556 81 150 ; Align 464709 131 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr272PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 294 -> 352 Target range: 487029 -> 487271 295 : TyrAsnThrMetTrpTyrLeuAlaProLeuProIleGlnLysLeuLeuLeuPheValM : 314 ||||||:!! |||||| ! !|||:!! !! ||||||:::||||||.!!:!!| TyrAsnSerGluTrpTyrArgIleProValAlaGluGlnLysValLeuLeuLeuLeuM 487030 : TACAATTCAGAATGGTACAGAATCCCTGTAGCGGAacaaaaagtattattacTCCTGA : 487087 315 : etGlnAsnSerMetLysAlaHisAlaLeuLeuLeuGlyGlyIleTyrValSerCysLe : 333 |||||||||||:!:|||! ! !! !:!!||||||||||||||| ! !:!!! !!! etGlnAsnSerLeuLysAspAspMetIleLeuLeuGlyGlyIleIleProAlaSerPh 487088 : TGCAAAATAGTTTAAAAGATGATATGATCCTACTTGGCGGAATTATTCCTGCATCTTT : 487144 334 : uGluGlyPheSerThrLeu >>>> Target Intron 1 >>>> ValThrThrS : 343 !:!!||||||||| ||| 71 bp :!! !|||| eGlnGlyPheSer---Leu++ -+IleArgThrS 487145 : CCAGGGATTTTCA---CTGgt.........................tgATTCGAACAT : 487242 344 : erIleSerTyrPheThrValMetTyrSer : 352 ||.!!|||||||||! !|||:!:|||||| erPheSerTyrPheMetValLeuTyrSer 487243 : CCTTCTCGTATTTCATGGTACTTTATTCT : 487271 vulgar: CbirOr272PI 294 352 . KQ414815.1 487029 487271 + 117 M 43 129 G 1 0 M 1 3 5 0 2 I 0 67 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 487030 487271 117 + . gene_id 4 ; sequence CbirOr272PI ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 487030 487161 . + . KQ414815.1 exonerate:protein2genome:local exon 487030 487161 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local splice5 487162 487163 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 487162 487232 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 487231 487232 . + . intron_id 0 ; splice_site "TG" KQ414815.1 exonerate:protein2genome:local cds 487233 487271 . + . KQ414815.1 exonerate:protein2genome:local exon 487233 487271 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 487030 487271 117 + . alignment_id 4 ; Query CbirOr272PI ; Align 487030 295 129 ; Align 487159 339 3 ; Align 487233 340 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr272PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 294 -> 342 Target range: 472704 -> 472848 295 : TyrAsnThrMetTrpTyrLeuAlaProLeuProIleGlnLysLeuLeuLeuPheValM : 314 ||||||:!! ||||||! !:!!||||||||||||||||||||||||! !|||:!!| TyrAsnSerGluTrpTyrCysSerProLeuProIleGlnLysLeuLeuHisPheIleM 472705 : TATAATTCTGAATGGTATTGCTCGCCGTTGCCAATACAAAAATTGCTACATTTTATCA : 472762 315 : etGlnAsnSerMetLysAlaHisAlaLeuLeuLeuGlyGlyIleTyrValSerCysLe : 333 |||||...!!!!!:!!. ::: ......::: |||! !!:!||| !!! :! etGlnGlyArgIleAsnLeuAsnIlePhePheMetTyrGlyThrPheValProSerMe 472763 : TGCAGGGAAGGATAAATctgaacatattttttatgtacGGTACATTCGTACCTTCGAT : 472819 334 : uGluGlyPheSerThrLeuValThrThr : 342 !|||||||||.!!.!!:!! !!.!||| tGluGlyPheGlyAlaValArgAsnThr 472820 : GGAAGGTTTTGGCGCGGTAAGGAATACG : 472848 vulgar: CbirOr272PI 294 342 . KQ414815.1 472704 472848 + 116 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 472705 472848 116 + . gene_id 5 ; sequence CbirOr272PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 472705 472848 . + . KQ414815.1 exonerate:protein2genome:local exon 472705 472848 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 472705 472848 116 + . alignment_id 5 ; Query CbirOr272PI ; Align 472705 295 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr272PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 93 -> 171 Target range: 481992 -> 482226 94 : SerIlePhePheLeuLeuIleValGluLeuIleProValIleLeuAspThrValValP : 113 |||:!:!!..!.|||:!!:!: !.!.:!! ! !!:!!||||||..!:!!|||| SerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValP 481993 : TCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTC : 482050 114 : roIleAsnGluSerArgGlnArgLysLeuGlnIleAspPheGluPhePheIleAspGl : 132 ||:!!||||||!!!||| !!.!:!!!!!! !:!!....!.|||!:!|||||||||:! roLeuAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGl 482051 : CTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCA : 482107 133 : uGluLysTyrPheTyrValTyrLeuIleHisGluIleThrValValLeuIleGlyVal : 151 !:!!||||||! ! !! ! !.!!|||:!! ! ! !!|||:!!! !!.! nGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAla 482108 : GCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCA : 482164 152 : PheThrMetLeuAlaThrGlyThrLeuProIleAlaPhePheArgHisCysCysAlaI : 171 ! !!!::!!!.!! !! !|||||| !:!! !!::.!!..!|||..!...::!: ThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerL 482165 : ACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCT : 482224 172 : le : 171 !: eu 482225 : TG : 482226 vulgar: CbirOr272PI 93 171 . KQ414815.1 481992 482226 + 116 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481993 482226 116 + . gene_id 6 ; sequence CbirOr272PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481993 482226 . + . KQ414815.1 exonerate:protein2genome:local exon 481993 482226 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481993 482226 116 + . alignment_id 6 ; Query CbirOr272PI ; Align 481993 94 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr272PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 294 -> 340 Target range: 441705 -> 441843 295 : TyrAsnThrMetTrpTyrLeuAlaProLeuProIleGlnLysLeuLeuLeuPheValM : 314 ||||||:!!! ||||||! !!.!|||||| ! ||||||||||||||||||:!!| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 315 : etGlnAsnSerMetLysAlaHisAlaLeuLeuLeuGlyGlyIleTyrValSerCysLe : 333 ||..!!!.|||! !! !! ! !:!! !|||..!||||||!:!!.! !!|||! etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 334 : uGluGlyPheSerThrLeuVal : 340 !:!!|||||||||:!!:!!:!! rLysGlyPheSerSerValIle 441821 : CAAAGGTTTTTCCTCGGTAATT : 441843 vulgar: CbirOr272PI 294 340 . KQ414815.1 441705 441843 + 115 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441843 115 + . gene_id 7 ; sequence CbirOr272PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441706 441843 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441843 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441843 115 + . alignment_id 7 ; Query CbirOr272PI ; Align 441706 295 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr272PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 294 -> 340 Target range: 445817 -> 445955 295 : TyrAsnThrMetTrpTyrLeuAlaProLeuProIleGlnLysLeuLeuLeuPheValM : 314 ||||||:!!! ||||||! !!.!|||||| ! ||||||||||||||||||:!!| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 315 : etGlnAsnSerMetLysAlaHisAlaLeuLeuLeuGlyGlyIleTyrValSerCysLe : 333 ||..!!!.|||! !! !! ! !:!! !|||..!||||||!:!!.! !!|||! etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 334 : uGluGlyPheSerThrLeuVal : 340 !:!!|||||||||:!!:!!:!! rLysGlyPheSerSerValIle 445933 : CAAAGGTTTTTCCTCGGTAATT : 445955 vulgar: CbirOr272PI 294 340 . KQ414815.1 445817 445955 + 115 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 445955 115 + . gene_id 8 ; sequence CbirOr272PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445818 445955 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445955 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 445955 115 + . alignment_id 8 ; Query CbirOr272PI ; Align 445818 295 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr272PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 294 -> 340 Target range: 469217 -> 469358 295 : TyrAsnThrMetTrpTyrLeuAlaProLeuProIleGlnLysLeuLeuLeuPheValM : 314 ||||||!:!:!:||||||:!!|||||| !|||:!!::!|||||||||||| !:!!| TyrAsnSerLeuTrpTyrIleAlaProThrProValArgLysLeuLeuLeuThrMetM 469218 : TACAATAGTCTATGGTATATAGCACCAACGCCTGTAAGGAAATTACTATTAACCATGA : 469275 315 : et<->GlnAsnSerMetLysAlaHisAlaLeuLeuLeuGlyGlyIleTyrValSerCy : 332 || |||||| !! :!! ! ! ! !|||:!!||||||:!:|||:!!!!! etLeuGlnAsnValArgGlnArgValPheLysLeuMetGlyGlyLeuTyrIleThrAs 469276 : TGCTGCAAAATGTAAGACAGCGCGTTTTCAAGTTAATGGGAGGATTGTATATAACTAA : 469332 333 : sLeuGluGlyPheSerThrLeuVal : 340 !:!!||||||||||||! !:!!:!! nIleGluGlyPheSerMetValIle 469333 : TATCGAAGGTTTTTCCATGGTAATC : 469358 vulgar: CbirOr272PI 294 340 . KQ414815.1 469217 469358 + 115 M 20 60 G 0 3 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 469218 469358 115 + . gene_id 9 ; sequence CbirOr272PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 469218 469358 . + . KQ414815.1 exonerate:protein2genome:local exon 469218 469358 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 469218 469358 115 + . alignment_id 9 ; Query CbirOr272PI ; Align 469218 295 60 ; Align 469281 315 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr272PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 298 -> 344 Target range: 490212 -> 490350 299 : TrpTyrLeuAlaProLeuProIleGlnLysLeuLeuLeuPheValMetGlnAsnSerM : 318 |||||| !||||||:!! !!||||||||||||||||||.!!:!!|||||||||!!!! TrpTyrThrAlaProIleAlaIleGlnLysLeuLeuLeuIleIleMetGlnAsnThrI 490213 : TGGTACACGGCTCCAATTGCCATACAAAAATTGCTGTTGATCATTATGCAAAATACTA : 490270 319 : etLysAlaHisAlaLeuLeuLeuGlyGlyIleTyrValSerCysLeuGluGlyPheSe : 337 !:::! ! !:!!:!! !||| !|||!!:|||:!!|||! !!!!!!:||||||! leArgAsnSerSerIleThrLeuPheGlyMetTyrIleSerSerPheAspGlyPhePh 490271 : TACGAAATTCTTCAATAACACTCTTCGGAATGTATATATCGTCTTTCGATGGTTTCTT : 490327 338 : rThrLeuValThrThrSerIle : 344 !! !:!! !!.!||| ||| eMetValAsnAsnThrIleIle 490328 : CATGGTAAATAACAcgattatt : 490350 vulgar: CbirOr272PI 298 344 . KQ414815.1 490212 490350 + 114 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 490213 490350 114 + . gene_id 10 ; sequence CbirOr272PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 490213 490350 . + . KQ414815.1 exonerate:protein2genome:local exon 490213 490350 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 490213 490350 114 + . alignment_id 10 ; Query CbirOr272PI ; Align 490213 299 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr268 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 145 -> 216 Target range: 485722 -> 485929 146 : IleLeuAspIleIleIleProMetLeuThrHisLysSerArgProArgGlnLeuGluM : 165 ||||||||||||:!:||||||:!! :!! ! !!!||||||||| !:!! ! IleLeuAspIleLeuIleProLeu------AsnTyrThrArgProArgThrIleProI 485723 : ATTCTGGACATTTTGATTCCTTTG------AATTACACTCGTCCGCGGACGATTCCTA : 485774 166 : etAspLeuGluLeuPheValAspLysGluHisTyrPhePheLeuTyrLeuGlyGlnGl : 184 !::!!! !|||! !|||||||||:!!:!! ! ||||||!:!! ! ! !!.!!!.! leAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisVa 485775 : TAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGT : 485831 185 : uLeuLeuValIleGlyIleGlyThrTrpSerMetLeuThrThrGlyThrPheLeuThr : 203 :!!||| !!:!! !||||||.!! !:!:|||!:!||| ...::: lValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMet 485832 : TGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatg : 485888 204 : ThrValThrLysHisSerCysAlaThrTyrLysIleVal : 216 .!!:!!! !:!!|||!!!|||!.! !|||! !|||||| AlaIleIleGlnHisThrCysGlyLeuTyrThrIleVal 485889 : gCGATAATACAGCACACCTGTGGTTTGTATACAATCGTT : 485929 vulgar: CbirOr268 145 216 . KQ414815.1 485722 485929 + 105 M 8 24 G 2 0 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485929 105 + . gene_id 1 ; sequence CbirOr268 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485929 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485929 . + . insertions 0 ; deletions 2 KQ414815.1 exonerate:protein2genome:local similarity 485723 485929 105 + . alignment_id 1 ; Query CbirOr268 ; Align 485723 146 24 ; Align 485747 156 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr275PI(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 121 -> 210 Target range: 464561 -> 464828 122 : PheThrLeuSerLeuCysIleLeuPheLeuIleGlyAlaSerPheIleThrIleMetG : 141 !:! !|||!:!:!! :!:! !|||:!! !! ! ! !|||||| !:!!:!:| TyrPheLeuAsnIleProValCysPheIleProValIleLeuPheIleCysLeuLeuG 464562 : TACTTCCTGAATATTCCAGTGTGCTTCATTCCCGTTATACTGTTCATCTGTTTACTCG : 464619 142 : luSerLysProIleIleLeuAspValIleAlaProMetAsnGluSerArgProArgLy : 160 || ! !||| !||||||||||||:!!||||||:!:|||||||||||| !!!.!:! luValLeuProAspIleLeuAspValValAlaProLeuAsnGluSerArgSerHisGl 464620 : AAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATGAATCTCGTTCTCATCA : 464676 161 : sLeuGluValAspIleGluLeuPheValPheAsnGluGluGlnTyrPhePhePheLeu : 179 !! ! !:!! ! |||!!!|||:!! !:!!.....!! ! !!!:!.!! ! ! nTyrLeuIleThrAlaGluPhePheIleThrAspSerSerProAsnTyrIleValThr 464677 : ATACTTAATTACCGCGGAATTTTTCATCACTGATAGTTCGCCGAATTATATCGTAACT : 464733 180 : LeuValLeuGluGlyValGlyAlaGlyIleGlyLeuTrpSerLeuLeuThrIleLeuT : 199 ! !||| ! !! !:!! ! ! !!!:|||:!! !!!!:!!:!!.!! ! !| CysValGlyThrAspIleThrLeuIleMetGlyValThrThrIleIleAlaSerGluT 464734 : TGTGTTGGTACGGATATTACTCTTATCATGGGAGTCACGACAATAATTGCCTCCGAAA : 464793 200 : hrPheIleThrThrValThrLysHisSerCysAla : 210 |||||! ! ! !:!! !:!!|||! !|||||| hrPheThrPheLeuLeuLeuGlnHisIleCysAla 464794 : CGTTCACTTTTTTGTTGCTGCAACATATCTGCGCA : 464828 vulgar: CbirOr275PI(F) 121 210 . KQ414815.1 464561 464828 + 112 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464562 464828 112 + . gene_id 1 ; sequence CbirOr275PI(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464562 464828 . + . KQ414815.1 exonerate:protein2genome:local exon 464562 464828 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464562 464828 112 + . alignment_id 1 ; Query CbirOr275PI(F) ; Align 464562 122 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr275PI(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 281 -> 329 Target range: 469208 -> 469358 282 : LeuPheArgTyrAspThrLeuTrpTyrValAlaProLeuProIleGlnLysLeuPheL : 301 ||| !||||||:!!!:!|||||||||:!!|||||| !|||:!!::!||||||.!.| LeuAsnArgTyrAsnSerLeuTrpTyrIleAlaProThrProValArgLysLeuLeuL 469209 : TTGAACAGATACAATAGTCTATGGTATATAGCACCAACGCCTGTAAGGAAATTACTAT : 469266 302 : eu<->IleMetGlnLysSerIleArgSerHisGluIle<->MetLeuGlyGlyLeuPh : 318 || !!:|||! !:!!!:!:!!|||..!!.!! .!! :!::!!|||||||||!: euThrMetMetLeuGlnAsnValArgGlnArgValPheLysLeuMetGlyGlyLeuTy 469267 : TAACCATGATGCTGCAAAATGTAAGACAGCGCGTTTTCAAGTTAATGGGAGGATTGTA : 469323 319 : eValLeuSerValGluGlyPheSerThrLeuVal : 329 !:!! !!:!:!!||||||||||||! !:!!:!! rIleThrAsnIleGluGlyPheSerMetValIle 469324 : TATAACTAATATCGAAGGTTTTTCCATGGTAATC : 469358 vulgar: CbirOr275PI(F) 281 329 . KQ414815.1 469208 469358 + 103 M 20 60 G 0 3 M 11 33 G 0 3 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 469209 469358 103 + . gene_id 2 ; sequence CbirOr275PI(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 469209 469358 . + . KQ414815.1 exonerate:protein2genome:local exon 469209 469358 . + . insertions 6 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 469209 469358 103 + . alignment_id 2 ; Query CbirOr275PI(F) ; Align 469209 282 60 ; Align 469272 302 33 ; Align 469308 313 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr261PSE(S) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 145 -> 214 Target range: 485722 -> 485929 146 : IleLeuAspValIleIleProMetAsnGluSerArgSerAsnLysLeuGluValAspI : 165 |||||||||:!!:!:||||||:!!||| ! !!!||| !!...! !:!! :!!:!! IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 166 : leGluPhePheIleAsnLysGluGlnTyrPhePheLeuTyrLeuValSerGluValVa : 184 ||| !|||:!!:!!:!!:!!:!!||||||!:!! ! ! !!.! !! |||:! erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 185 : lGlyValAlaIleGlyCysTrpSerValLeuSerThrLeuThrPheLeuThrThrVal : 203 ! !||| !||||||... !:!!||||||||| ...::: .!!:!! uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 204 : ValLysHisSerCysAlaThrTyrLysIleVal : 214 :!!:!!|||!!!|||!.! !|||! !|||||| IleGlnHisThrCysGlyLeuTyrThrIleVal 485895 : ATACAGCACACCTGTGGTTTGTATACAATCGTT : 485929 vulgar: CbirOr261PSE(S) 145 214 . KQ414815.1 485722 485929 + 128 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485929 128 + . gene_id 1 ; sequence CbirOr261PSE(S) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485929 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485929 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485929 128 + . alignment_id 1 ; Query CbirOr261PSE(S) ; Align 485723 146 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr261PSE(S) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 143 -> 214 Target range: 475560 -> 475773 144 : SerValIleLeuAspValIleIleProMetAsnGluSerArgSerAsnLysLeuGluV : 163 ||| !||||||||| !:!::!!|||:!!|||||||||||| !!!:! !! ! !: SerLysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuI 475561 : TCTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGA : 475618 164 : alAspIleGluPhePheIleAsnLysGluGlnTyrPhePheLeuTyrLeuValSerGl : 182 :: ||||||:::|||||||||:!!:!!:!!||||||!:!||| !:!!:!!! !:! leArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGl 475619 : tacgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCA : 475675 183 : uValValGlyValAlaIleGlyCysTrpSerValLeuSerThrLeuThrPheLeuThr : 201 !..!||| !:!! !:!: ! !! !!! !:!!:!!||| !.!!.!.!!!||| nThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThr 475676 : GACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACC : 475732 202 : ThrValValLysHisSerCysAlaThrTyrLysIleVal : 214 ! ! !:!!:!!|||!!! ::: ::::::|||||| MetTrpLeuGlnHisCysIleSerLeuPheGluIleVal 475733 : ATGTGGTTGCAACATTGCATaagtttatttgaaattgtt : 475773 vulgar: CbirOr261PSE(S) 143 214 . KQ414815.1 475560 475773 + 117 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475561 475773 117 + . gene_id 2 ; sequence CbirOr261PSE(S) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475561 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475561 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475561 475773 117 + . alignment_id 2 ; Query CbirOr261PSE(S) ; Align 475561 144 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr261PSE(S) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 115 -> 213 Target range: 464549 -> 464840 116 : LeuPheAspSerTyrIleLeuAlaTyrSerLeuCysPhePhePheValLeuAlaThrP : 135 |||.!!... !!|||.!!||| ! ! !!:!!||||||.!! !|||:!! ! ! LeuIleSerArgTyrPheLeuAsnIleProValCysPheIleProValIleLeuPheI 464550 : TTGATTTCACGATACTTCCTGAATATTCCAGTGTGCTTCATTCCCGTTATACTGTTCA : 464607 136 : roCysAlaThrIleIleGluCysArgSerValIleLeuAspValIleIleProMetAs : 154 !||| :!!:!!||| ! !!! !||||||||||||:!! |||:!:|| leCys------LeuLeuGluValLeuProAspIleLeuAspValValAlaProLeuAs 464608 : TCTGT------TTACTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAA : 464658 155 : nGluSerArgSerAsnLysLeuGluValAspIleGluPhePheIle<->AsnLysGlu : 172 |||||||||||||:!!:!!! ! !:!! ! |||||||||||| :!!!....! nGluSerArgSerHisGlnTyrLeuIleThrAlaGluPhePheIleThrAspSerSer 464659 : TGAATCTCGTTCTCATCAATACTTAATTACCGCGGAATTTTTCATCACTGATAGTTCG : 464715 173 : GlnTyrPhePheLeuTyrLeuValSerGluValValGlyValAlaIleGlyCysTrpS : 192 ! ! !!!:!.!!:!! !! !|||.!! !! !:!! !:!! !!!:||| ! !! ProAsnTyrIleValThrCysValGlyThrAspIleThrLeuIleMetGlyValThrT 464716 : CCGAATTATATCGTAACTTGTGTTGGTACGGATATTACTCTTATCATGGGAGTCACGA : 464775 193 : erValLeuSerThrLeuThrPheLeuThrThrValValLysHisSerCysAlaThrTy : 211 !!:!!:!!:!!:!! !|||||| ! ! !:!!:!!:!!|||! !||||||! !!: hrIleIleAlaSerGluThrPheThrPheLeuLeuLeuGlnHisIleCysAlaMetPh 464776 : CAATAATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAATGTT : 464832 212 : rLysIle : 213 !|||||| eLysIle 464833 : CAAAATC : 464840 vulgar: CbirOr261PSE(S) 115 213 . KQ414815.1 464549 464840 + 111 M 21 63 G 2 0 M 31 93 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464550 464840 111 + . gene_id 3 ; sequence CbirOr261PSE(S) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464550 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464550 464840 . + . insertions 3 ; deletions 2 KQ414815.1 exonerate:protein2genome:local similarity 464550 464840 111 + . alignment_id 3 ; Query CbirOr261PSE(S) ; Align 464550 116 63 ; Align 464613 139 93 ; Align 464709 170 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr261PSE(S) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 137 -> 213 Target range: 457183 -> 457411 138 : ThrIleIleGluCysArgSerValIleLeuAspValIleIleProMetAsnGluSerA : 157 |||! :!::!! ! ! !!:!!:!!||||||:!!:!::!!|||:!!|||||||||| ThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerA 457184 : ACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCAC : 457241 158 : rgSerAsnLysLeuGluValAspIleGluPhePheIleAsnLysGluGlnTyrPhePh : 176 || !! !:!!||| ! :!! |||!:!|||:!!:!!! !:!!:!!|||.!. rgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHi 457242 : GCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCA : 457298 177 : eLeuTyrLeuValSerGluValValGlyValAlaIleGlyCysTrpSerValLeuSer : 195 !! ! !:!!!.! ! :!!..! !!:!! !|||!.!..! !!!:!! !:!! sTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAla 457299 : TTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCT : 457355 196 : ThrLeuThrPheLeuThrThrValValLysHisSerCysAlaThrTyrLysIle : 213 !.! !:!!!!.|||! !||| !||| !||| !|||!.! !!:!|||:!! AsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457356 : AACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr261PSE(S) 137 213 . KQ414815.1 457183 457411 + 108 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457184 457411 108 + . gene_id 4 ; sequence CbirOr261PSE(S) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457184 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457184 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457184 457411 108 + . alignment_id 4 ; Query CbirOr261PSE(S) ; Align 457184 138 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr270 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 145 -> 214 Target range: 475566 -> 475773 146 : IleLeuAspValIleAlaProMetAsnGluSerArgSerArgLysIleGluMetGluP : 165 ||||||||| !:!: !|||:!!|||||||||||| !!!!! ! ! !!::.... IleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleArgI 475567 : ATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaa : 475624 166 : heGluLeuPheValAsnGluGluGlnTyrPhePheLeuTyrLeuValLeuGluIleVa : 184 ..||| |||:::||||||:!!:!!||||||!:!||| !:!!:!!! !:!!! !|| leGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrVa 475625 : tagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGT : 475681 185 : lGlyValGluIleGlyValTrpLeuValLeuSerThrGlyThrPheLeuThrThrVal : 203 | !:!! :!: !! ! ! !:!!:!!|||! !.!!.!.!!!|||! ! ! lThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrp 475682 : AACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGG : 475738 204 : AlaGlnHisSerCysAlaValTyrLysIleVal : 214 !||||||!!! ::::::::::::|||||| LeuGlnHisCysIleSerLeuPheGluIleVal 475739 : TTGCAACATTGCATaagtttatttgaaattgtt : 475773 vulgar: CbirOr270 145 214 . KQ414815.1 475566 475773 + 106 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475567 475773 106 + . gene_id 1 ; sequence CbirOr270 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475567 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475567 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475567 475773 106 + . alignment_id 1 ; Query CbirOr270 ; Align 475567 146 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr270 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 145 -> 213 Target range: 464633 -> 464840 146 : IleLeuAspValIleAlaProMetAsnGluSerArgSerArgLysIleGluMetGluP : 165 ||||||||||||:!!||||||:!:|||||||||||||||!.!:!! ! !!!: IleLeuAspValValAlaProLeuAsnGluSerArgSerHisGlnTyrLeuIleThrA 464634 : ATTCTCGACGTGGTTGCGCCCCTCAATGAATCTCGTTCTCATCAATACTTAATTACCG : 464691 166 : heGluLeuPheValAsnGluGluGln<->TyrPhePheLeuTyrLeuValLeuGluIl : 183 |||!!!|||:!!!.!!!:.....! !!!:!.!!:!! !! !||| ! ! laGluPhePheIleThrAspSerSerProAsnTyrIleValThrCysValGlyThrAs 464692 : CGGAATTTTTCATCACTGATAGTTCGCCGAATTATATCGTAACTTGTGTTGGTACGGA : 464748 184 : eValGlyValGluIleGlyValTrpLeuValLeuSerThrGlyThrPheLeuThrThr : 202 !:!! !:!! !!:|||||| ! !:!!:!!:!!:!!! !|||||| ! ! ! pIleThrLeuIleMetGlyValThrThrIleIleAlaSerGluThrPheThrPheLeu 464749 : TATTACTCTTATCATGGGAGTCACGACAATAATTGCCTCCGAAACGTTCACTTTTTTG : 464805 203 : ValAlaGlnHisSerCysAlaValTyrLysIle : 213 :!! !||||||! !||||||:!!!:!|||||| LeuLeuGlnHisIleCysAlaMetPheLysIle 464806 : TTGCTGCAACATATCTGCGCAATGTTCAAAATC : 464840 vulgar: CbirOr270 145 213 . KQ414815.1 464633 464840 + 102 M 28 84 G 0 3 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464634 464840 102 + . gene_id 2 ; sequence CbirOr270 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464634 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464634 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464634 464840 102 + . alignment_id 2 ; Query CbirOr270 ; Align 464634 146 84 ; Align 464721 174 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr269 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 145 -> 214 Target range: 485722 -> 485929 146 : IleLeuAspValIleIleProMetAsnGluSerArgProArgLysIleGluMetAspL : 165 |||||||||:!!:!:||||||:!!||| ! !!!|||||||||! !||| !!::!!! IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 166 : euGluLeuPheIleAsnGluGluGlnTyrPhePheValTyrLeuValGlnGlnValVa : 184 !|||! !|||:!!:!!:!!:!!:!!||||||!:! ! ! !!.!!!. |||:! erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 185 : lGlyValAlaLeuGlyIleTrpSerMetIleMetThrGlyThrValIleIleThrVal : 203 ! !||| !:!!||| !:!::!!! ||| :::|||:::.!!:!! uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 204 : AlaLysHisSerCysAlaThrTyrLysIleVal : 214 !:!!|||!!!|||!.! !|||! !|||||| IleGlnHisThrCysGlyLeuTyrThrIleVal 485895 : ATACAGCACACCTGTGGTTTGTATACAATCGTT : 485929 vulgar: CbirOr269 145 214 . KQ414815.1 485722 485929 + 135 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485929 135 + . gene_id 1 ; sequence CbirOr269 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485929 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485929 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485929 135 + . alignment_id 1 ; Query CbirOr269 ; Align 485723 146 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr269 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 125 -> 213 Target range: 457147 -> 457411 126 : LeuCysIleSerLeuPheLeuGlyValSerGlyIleThrThrPheGluCysArgSerI : 145 :!! :!!||| !!:!! !|||!.! !! !|||||||||!!.:!! ! ! !!| IleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheProI 457148 : ATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGA : 457205 146 : leIleLeuAspValIleIleProMetAsnGluSerArgProArgLysIleGluMetAs : 164 ||:!!||||||:!!:!::!!|||:!!||||||||||||||| !!:!!:!! ! :!: leLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrLeuTh 457206 : TATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTAC : 457262 165 : pLeuGluLeuPheIleAsnGluGluGlnTyrPhePheValTyrLeuValGlnGlnVal : 183 !|||! !|||:!!:!! !:!!:!!|||.!. ! ! !:!!!.!!!. :!! rAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIle 457263 : AGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATC : 457319 184 : ValGlyValAlaLeuGlyIleTrpSerMetIleMetThrGlyThrValIleIleThrV : 203 ..! !!:!! !:!!!.! ! !!!:!:! ! !.!! !:!!:!!:!!|||||| ThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrA 457320 : ACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGA : 457379 204 : alAlaLysHisSerCysAlaThrTyrLysIle : 213 !!.! !||| !|||!.! !!:!|||:!! snValLeuHisValCysGlyLeuPheLysLeu 457380 : ACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr269 125 213 . KQ414815.1 457147 457411 + 127 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457148 457411 127 + . gene_id 2 ; sequence CbirOr269 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457148 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457148 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457148 457411 127 + . alignment_id 2 ; Query CbirOr269 ; Align 457148 126 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr269 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 143 -> 214 Target range: 475560 -> 475773 144 : SerIleIleLeuAspValIleIleProMetAsnGluSerArgProArgLysIleGluM : 163 |||! ||||||||| !:!::!!|||:!!|||||||||||||||!!! ! ! !! SerLysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuI 475561 : TCTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGA : 475618 164 : etAspLeuGluLeuPheIleAsnGluGluGlnTyrPhePheValTyrLeuValGlnGl : 182 :: :::||| ||||||||||||:!!:!!||||||!:!:!! !:!!:!! ! || leArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGl 475619 : tacgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCA : 475675 183 : nValValGlyValAlaLeuGlyIleTrpSerMetIleMetThrGlyThrValIleIle : 201 |..!||| !:!! !||| ! ! !!! :!! |||! !.!!:!!.!!! ! nThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThr 475676 : GACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACC : 475732 202 : ThrValAlaLysHisSerCysAlaThrTyrLysIleVal : 214 ! ! ! !:!!|||!!! ::: ::::::|||||| MetTrpLeuGlnHisCysIleSerLeuPheGluIleVal 475733 : ATGTGGTTGCAACATTGCATaagtttatttgaaattgtt : 475773 vulgar: CbirOr269 143 214 . KQ414815.1 475560 475773 + 116 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475561 475773 116 + . gene_id 3 ; sequence CbirOr269 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475561 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475561 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475561 475773 116 + . alignment_id 3 ; Query CbirOr269 ; Align 475561 144 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr269 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 324 -> 377 Target range: 472677 -> 472839 325 : HisSerLeuGlyIleLeuGluSerAlaTyrAspThrLeuTrpTyrValAlaProLeuP : 344 :!!..!||||||||||||... ! !|||:!!:!! !|||||| !:!!||||||| AsnAspLeuGlyIleLeuSerLeuArgTyrAsnSerGluTrpTyrCysSerProLeuP 472678 : AATGATCTAGGAATCCTTTCTCTCAGGTATAATTCTGAATGGTATTGCTCGCCGTTGC : 472735 345 : roIleGlnLysLeuPhe<->LeuIleMetGlnLysSerIleArgAlaHisLysValVa : 362 ||||||||||||||.!. !!!||||||||| !!!!|||!.! ::: roIleGlnLysLeuLeuHisPheIleMetGlnGlyArgIleAsnLeuAsnIlePhePh 472736 : CAATACAAAAATTGCTACATTTTATCATGCAGGGAAGGATAAATctgaacatattttt : 472792 363 : lLeuGlyGlyLeuPheValLeuSerIleGluGlyPheSerThrLeu : 377 ::: ||| !||||||! !|||!!:|||||||||.!!.!!:!! eMetTyrGlyThrPheValProSerMetGluGlyPheGlyAlaVal 472793 : tatgtacGGTACATTCGTACCTTCGATGGAAGGTTTTGGCGCGGTA : 472839 vulgar: CbirOr269 324 377 . KQ414815.1 472677 472839 + 102 M 25 75 G 0 3 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 472678 472839 102 + . gene_id 4 ; sequence CbirOr269 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 472678 472839 . + . KQ414815.1 exonerate:protein2genome:local exon 472678 472839 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 472678 472839 102 + . alignment_id 4 ; Query CbirOr269 ; Align 472678 325 75 ; Align 472756 350 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr288PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 362 -> 421 Target range: 445817 -> 446067 363 : TyrAsnGlyLeuTrpTyrThrAlaProLeuHisThrGlnLysLeuLeuLeuPheMetM : 382 ||||||..! !|||||| !!.!|||||| !.!!||||||||||||||||||!!:| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 383 : etGlnLysSerLysValAspValIleLeuThrMetGlyThrIlePheValAlaThrLe : 401 ||..!||||||! !:!! !! :!!!.!:!:..! !||||||!.! !! !! etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 402 : uGluGlyLeuAlaSer >>>> Target Intron 1 >>>> LeuIleSerMetT : 411 !:!!|||!!!:!!||| 73 bp :!!||||||! : rLysGlyPheSerSer++ ++MetIleSerThrS 445933 : CAAAGGTTTTTCCTCGgt.........................agATGATAAGCACTT : 446035 412 : hrLeuSerTyrPheThrValIleTyrSerThr : 421 !!!!!|||||| !!|||!.!|||||||||||| erPheSerTyrValThrAlaIleTyrSerThr 446036 : CTTTCTCGTATGTCACAGCGATATATTCGACT : 446067 vulgar: CbirOr288PSE 362 421 . KQ414815.1 445817 446067 + 135 M 44 132 5 0 2 I 0 69 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 446067 135 + . gene_id 1 ; sequence CbirOr288PSE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 445818 445949 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445949 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445950 445951 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445950 446022 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 446021 446022 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 446023 446067 . + . KQ414815.1 exonerate:protein2genome:local exon 446023 446067 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 446067 135 + . alignment_id 1 ; Query CbirOr288PSE ; Align 445818 363 132 ; Align 446023 407 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr288PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 131 -> 207 Target range: 457162 -> 457390 132 : HisCysAlaMetPheProPheAlaIleLeuHisPheLeuProLeuMetLeuAspValI : 151 :!!|||!.! .!. !.!!.!!! |||!!..!!!!!|||:!!:!:||||||:!!: TyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleV 457163 : TATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTG : 457220 152 : leLeuProLeuAsnGluSerArgProLeuGlnPheIleValThrMetGluTyrLeuIl : 170 !::!!|||||||||||||||||||||! !:!!!!. !:!!||| !||||||!!!:! alValProLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheVa 457221 : TGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGT : 457277 171 : eAsnGlnGluGluTyrPheTyrIleIlePheLeuHisValGlyLeuThrPheValVal : 189 !:!!..!:!!:!!|||.!.:!! !|||.!! !|||:!! ! ! !.!.:!!:!! lAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIle 457278 : CGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATC : 457334 190 : SerMetIleAlaIleGlyIleThrThrAlaThrIleMetLeuTyrIleLeuHis : 207 :!! ! !.!!:!! ! !!.! !:!! !:!!!!: ! !!:!!|||||| AlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHis 457335 : GCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCAC : 457390 vulgar: CbirOr288PSE 131 207 . KQ414815.1 457162 457390 + 132 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457163 457390 132 + . gene_id 2 ; sequence CbirOr288PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457163 457390 . + . KQ414815.1 exonerate:protein2genome:local exon 457163 457390 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457163 457390 132 + . alignment_id 2 ; Query CbirOr288PSE ; Align 457163 132 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr288PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 138 -> 207 Target range: 471582 -> 471789 139 : AlaIleLeuHisPheLeuProLeuMetLeuAspValIleLeuProLeuAsnGluSerA : 158 !.!|||||| !.!.! !||||||!!:||||||:!!|||:!!||||||||| !|||| ValIleLeuSerMetSerProLeuIleLeuAspIleIleIleProLeuAsnThrSerA 471583 : GTAATACTGTCCATGTCGCCTCTTATTCTCGATATTATAATACCTCTGAACACGTCAC : 471640 159 : rgProLeuGlnPheIleValThrMetGluTyrLeuIleAsnGlnGluGluTyrPheTy : 177 |||||! ! ! ||| ! !!|||.!.!!:!:!:!! !||||||||||||||||||!! rgProArgTyrPheProPheThrPheAspPheIleProAsnGlnGluGluTyrPhe** 471641 : GTCCACGTTACTTTCCATTTACGTTCGATTTCATTCCCAATCAAGAGGAATACTTCTA : 471697 178 : rIleIlePheLeuHisValGlyLeuThrPheValValSerMetIleAlaIleGlyIle : 196 ||| !:!! ! !|||:!! !! !:!! !.!!:!: !|||!!: !! ! *ProIleThrIlePheSerGlyIleLeuCysIleCysGlyLeuAlaAlaMetIleSer 471698 : ACCGATTACTATCTTTTCTGGCATATTGTGCATTTGTGGATTAGCAGCAATGATAAGT : 471754 197 : ThrThrAlaThrIleMetLeuTyrIleLeuHis : 207 !:! !!.! !:!!|||:!! !!:!!|||||| SerGluGlyLeuLeuMetMetAsnValLeuHis 471755 : AGCGAGGGTCTGCTTATGATGAATGTTTTACAC : 471789 vulgar: CbirOr288PSE 138 207 . KQ414815.1 471582 471789 + 132 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471583 471789 132 + . gene_id 3 ; sequence CbirOr288PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471583 471789 . + . KQ414815.1 exonerate:protein2genome:local exon 471583 471789 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471583 471789 132 + . alignment_id 3 ; Query CbirOr288PSE ; Align 471583 139 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr288PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 128 -> 202 Target range: 481977 -> 482202 129 : AlaPheCysHisCysAlaMetPheProPheAlaIleLeuHisPheLeuProLeuMetL : 148 |||!!. !:!! :!!:!!!!. !.!. !:!:! !|||.!.! ! !!!!:!:| AlaLeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerPheValL 481978 : gcGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTC : 482035 149 : euAspValIleLeuProLeuAsnGluSerArgProLeuGlnPheIleValThrMetGl : 167 |||||||||||:!!||||||||||||!!!||| !!! !|||||| !|||:!!||||| euAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMetGl 482036 : TAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGA : 482092 168 : uTyrLeuIleAsnGlnGluGluTyrPheTyrIleIlePheLeuHisValGlyLeuThr : 186 ||||!!!|||:!!|||:!!:!!|||! !.!!||| !!!||| ! !!!!!:!! uTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSer 482093 : GTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCC : 482149 187 : Phe<->ValValSerMetIleAlaIleGlyIleThrThrAlaThrIleMet : 202 ||| ||||||:!!! !||| !:!!|||||| !||| !! !:!!||| PheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMet 482150 : TTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATG : 482202 vulgar: CbirOr288PSE 128 202 . KQ414815.1 481977 482202 + 126 M 59 177 G 0 3 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481978 482202 126 + . gene_id 4 ; sequence CbirOr288PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481978 482202 . + . KQ414815.1 exonerate:protein2genome:local exon 481978 482202 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481978 482202 126 + . alignment_id 4 ; Query CbirOr288PSE ; Align 481978 129 177 ; Align 482158 188 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr288PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 133 -> 207 Target range: 475527 -> 475749 134 : AlaMetPheProPheAlaIleLeuHisPheLeuProLeuMetLeuAspValIleLeuP : 153 .!!!!:||| !!.!. !:!:|||! !|||! ! !! !!!:|||||| !:!:|||| ThrIlePheThrMetIleLeuLeuLeuPheSerSerLysIleLeuAspSerLeuLeuP 475528 : ACAATATTCACCATGATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTAC : 475585 154 : roLeuAsnGluSerArgProLeuGlnPheIleValThrMetGluTyrLeuIleAsnGl : 172 |||||||||||||||||||| ! !! !:!:::: :::||||||...||||||:! roLeuAsnGluSerArgProSerTrpSerLeuIleArgIleGluTyrPheIleAsnGl 475586 : CCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaatagaatatttcataaacGA : 475642 173 : nGluGluTyrPheTyrIleIlePheLeuHisValGlyLeuThrPheValValSerMet : 191 !:!!:!!|||||||||:!:! ! ! :!!:!! ! !:!!|||.!!:!!:!!! ! uGlnLysTyrPheTyrLeuSerValIleTyrGlnThrValThrIleLeuLeuPheGly 475643 : ACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGTAACGATCCTTCTGTTTGGT : 475699 192 : IleAlaIleGlyIleThrThrAlaThrIleMetLeuTyrIleLeuHis : 207 ! !.!! !! ! !||| !|||! !.!!! :!!!:::!:! !||| ThrThrTyrValAlaThrGluAlaIlePheThrMetTrpLeuGlnHis 475700 : ACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGGTTGCAACAT : 475749 vulgar: CbirOr288PSE 133 207 . KQ414815.1 475527 475749 + 122 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475528 475749 122 + . gene_id 5 ; sequence CbirOr288PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475528 475749 . + . KQ414815.1 exonerate:protein2genome:local exon 475528 475749 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475528 475749 122 + . alignment_id 5 ; Query CbirOr288PSE ; Align 475528 134 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr288PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 362 -> 412 Target range: 441705 -> 441855 363 : TyrAsnGlyLeuTrpTyrThrAlaProLeuHisThrGlnLysLeuLeuLeuPheMetM : 382 ||||||..! !|||||| !!.!|||||| !.!!||||||||||||||||||!!:| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 383 : etGlnLysSerLysValAspValIleLeuThrMetGlyThrIlePheValAlaThrLe : 401 ||..!||||||! !:!! !! :!!!.!:!:..! !||||||!.! !! !! etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 402 : uGluGlyLeuAlaSerLeuIleSerMetThrLeu : 412 !:!!|||!!!:!!|||:!!|||!!!:!: !||| rLysGlyPheSerSerValIleCysLeuLeuLeu 441821 : CAAAGGTTTTTCCTCGGTAATTTGTCTTTTGCTA : 441855 vulgar: CbirOr288PSE 362 412 . KQ414815.1 441705 441855 + 109 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441855 109 + . gene_id 6 ; sequence CbirOr288PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441706 441855 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441855 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441855 109 + . alignment_id 6 ; Query CbirOr288PSE ; Align 441706 363 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr265 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 129 -> 213 Target range: 464585 -> 464840 130 : PheValIleThrValProLeuIleThrIleMetGluHisArgSerIleIleLeuAspV : 149 |||:!! !..!:!!! !!!!||| !:!!:!:||| ! !! !|||||||||| PheIleProValIleLeuPheIleCysLeuLeuGluValLeuProAspIleLeuAspV 464586 : TTCATTCCCGTTATACTGTTCATCTGTTTACTCGAAGTATTGCCAGATATTCTCGACG : 464643 150 : alIleAlaProMetAsnAlaSerArgProArgLysArgGluIleAspLeuGluPhePh : 168 ||:!!||||||:!:|||! !|||||| !!!.!:!! ! !||| ! !|||||||| alValAlaProLeuAsnGluSerArgSerHisGlnTyrLeuIleThrAlaGluPhePh 464644 : TGGTTGCGCCCCTCAATGAATCTCGTTCTCATCAATACTTAATTACCGCGGAATTTTT : 464700 169 : eValAsnGluGluGln<->TyrPheCysPheLeuLeuValLeuGluGlyIleGlyVal : 186 |:!!!.!!!:.....! !!!:! ! ! !! !||| ! !! !||| !:!! eIleThrAspSerSerProAsnTyrIleValThrCysValGlyThrAspIleThrLeu 464701 : CATCACTGATAGTTCGCCGAATTATATCGTAACTTGTGTTGGTACGGATATTACTCTT : 464757 187 : GlyValGlyPheTrpThrLeuLeuThrThrGlyThrPheLeuIleThrValAlaLysH : 206 !:!!||| !! !|||:!!:!!.!!:!!! !|||||| !.!! !:!! !:!!| IleMetGlyValThrThrIleIleAlaSerGluThrPheThrPheLeuLeuLeuGlnH 464758 : ATCATGGGAGTCACGACAATAATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGCAAC : 464817 207 : isSerCysAlaAlaTyrLysIle : 213 ||! !|||||| !!:!|||||| isIleCysAlaMetPheLysIle 464818 : ATATCTGCGCAATGTTCAAAATC : 464840 vulgar: CbirOr265 129 213 . KQ414815.1 464585 464840 + 104 M 44 132 G 0 3 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464586 464840 104 + . gene_id 1 ; sequence CbirOr265 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464586 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464586 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464586 464840 104 + . alignment_id 1 ; Query CbirOr265 ; Align 464586 130 132 ; Align 464721 174 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr265 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 135 -> 213 Target range: 457177 -> 457411 136 : LeuIleThrIleMetGluHisArgSerIleIleLeuAspValIleAlaProMetAsnA : 155 :!!||||||! :!!:!!! ! ! !!|||:!!||||||:!!:!:!.!|||:!!|||! ValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnG 457178 : GTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACG : 457235 156 : laSerArgProArgLysArgGluIleAspLeuGluPhePheValAsnGluGluGlnTy : 174 !||||||||| !!:!! ! ! :!! !|||!:!||||||:!! !:!!:!!|| luSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTy 457236 : AATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTA : 457292 175 : rPheCysPheLeuLeuValLeuGluGlyIleGlyValGlyValGlyPheTrpThrLeu : 193 |.!. !!:!:!!:!!!.!! ! !! !!:!! !:!!!.! ! |||||| rMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeu 457293 : TATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTA : 457349 194 : LeuThrThrGlyThrPheLeuIleThrValAlaLysHisSerCysAlaAlaTyrLysI : 213 !.!!!.!! !:!!!!.||||||||| !!.! !||| !|||!.! !!:!|||: ThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysL 457350 : ACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGC : 457409 214 : le : 213 !! eu 457410 : TT : 457411 vulgar: CbirOr265 135 213 . KQ414815.1 457177 457411 + 103 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457178 457411 103 + . gene_id 2 ; sequence CbirOr265 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457178 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457178 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457178 457411 103 + . alignment_id 2 ; Query CbirOr265 ; Align 457178 136 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr265 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 137 -> 218 Target range: 471582 -> 471825 138 : ThrIleMetGluHisArgSerIleIleLeuAspValIleAlaProMetAsnAlaSerA : 157 ..!|||:!!... ! !!:!!|||||||||:!!||| !|||:!!|||.!!|||| ValIleLeuSerMetSerProLeuIleLeuAspIleIleIleProLeuAsnThrSerA 471583 : GTAATACTGTCCATGTCGCCTCTTATTCTCGATATTATAATACCTCTGAACACGTCAC : 471640 158 : rgProArgLysArgGluIleAspLeuGluPhePheValAsnGluGluGlnTyrPheCy : 176 |||||||| ! ! !.!! !!!!!:|||.!! !|||:!!|||:!!||||||! rgProArgTyrPheProPheThrPheAspPheIleProAsnGlnGluGluTyrPhe** 471641 : GTCCACGTTACTTTCCATTTACGTTCGATTTCATTCCCAATCAAGAGGAATACTTCTA : 471697 177 : sPheLeuLeuValLeuGluGlyIleGlyValGlyValGlyPheTrpThrLeuLeuThr : 195 :!! !:!!!!!...|||||| ! ! ! !|||!!. .!!:!!:!!!:! *ProIleThrIlePheSerGlyIleLeuCysIleCysGlyLeuAlaAlaMetIleSer 471698 : ACCGATTACTATCTTTTCTGGCATATTGTGCATTTGTGGATTAGCAGCAATGATAAGT : 471754 196 : ThrGlyThrPheLeuIleThrValAlaLysHisSerCysAlaAlaTyrLysIleValS : 215 !:!! ! !.!.|||!!:! ! !!.! !||| ! !!!.! !|||!!.|||!.!! SerGluGlyLeuLeuMetMetAsnValLeuHisValArgGlyLeuTyrAsnIleAlaT 471755 : AGCGAGGGTCTGCTTATGATGAATGTTTTACACGTACGTGGATTGTATAACATCGCTA : 471814 216 : erAsnValMet : 218 !! |||:!: hr***ValLeu 471815 : CGTGAGTACTA : 471825 vulgar: CbirOr265 137 218 . KQ414815.1 471582 471825 + 103 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471583 471825 103 + . gene_id 3 ; sequence CbirOr265 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471583 471825 . + . KQ414815.1 exonerate:protein2genome:local exon 471583 471825 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471583 471825 103 + . alignment_id 3 ; Query CbirOr265 ; Align 471583 138 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr265 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 112 -> 214 Target range: 475462 -> 475773 113 : GluGluTyrLeuSerGluSerTyrIlePheAlaLeu-----PheLeuCysPheLeuPh : 130 ||||||||| ...||| ||||||:::|||#####...::! ! ||| ! GluGluTyrAsnGluGluIleLeuIlePheSerLeu#####IleValThrValLeuVa 475463 : GAGGAGTATAAtgaagaaattcttattttttcgttgggaatattgtTACAGTACTGGT : 475519 131 : eValIleThrValProLeuIleThrIleMetGluHisArgSerIleIleLeuAspVal : 149 ! !|||:!! ! !!!:! !:!::!: ! !|||! ||||||||| ! lTyrProThrIlePheThrMetIleLeuLeuLeuPheSerSerLysIleLeuAspSer 475520 : ATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTCT : 475576 150 : IleAlaProMetAsnAlaSerArgProArgLysArgGluIleAspLeuGluPhePheV : 169 :!: !|||:!!|||! !|||||||||!!! ! ! !||| :::|||:::|||: LeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleArgIleGluTyrPheI 475577 : TTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaatagaatatttca : 475636 170 : alAsnGluGluGlnTyrPheCysPheLeuLeuValLeuGluGlyIleGlyValGlyVa : 188 ::||||||:!!:!!||||||! !.!. !:!!:!!! !:!! !:!! !:!! !:! leAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrValThrIleLeuLe 475637 : taaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGTAACGATCCTTCT : 475693 189 : lGlyPheTrpThrLeuLeuThrThrGlyThrPheLeuIleThrValAlaLysHisSer : 207 ! ! ! |||! !:!!.!!|||! !.!!.!.!!!! !! ! ! !:!!|||!!! uPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrpLeuGlnHisCys 475694 : GTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGGTTGCAACATTGC : 475750 208 : CysAlaAlaTyrLysIleVal : 214 ::: ::::::|||||| IleSerLeuPheGluIleVal 475751 : ATaagtttatttgaaattgtt : 475773 vulgar: CbirOr265 112 214 . KQ414815.1 475462 475773 + 100 M 12 36 F 0 5 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475463 475773 100 + . gene_id 4 ; sequence CbirOr265 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475463 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475463 475773 . + . insertions 0 ; deletions 0 ; frameshifts 5 KQ414815.1 exonerate:protein2genome:local similarity 475463 475773 100 + . alignment_id 4 ; Query CbirOr265 ; Align 475463 113 36 ; Align 475504 125 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr283 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 244 Query range: 88 -> 213 Target range: 456822 -> 457411 89 : ValLysGlnLeuValGluGlnIleArgHisAspTrpLysLeuValLysSerLysLeuG : 108 :!!::!:!!:!! !!!:.!.||| ! !!|||||||||! !:!!|||!:!! ! !| IleArgGluIleTyrAspAsnIleAlaAspAspTrpLysSerLeuLysAsnMetGluG 456823 : ATACGGGAGATTTACGACAATATCGCTGACGATTGGAAATCATTGAAGAACATGGAAG : 456880 109 : luIleAspIleIleLysLysTyrAlaGluAsnGlyArgPheValThrIleIleValIl : 127 |||||!::||||||:::|||||||||.!...!|||||| !!|||:!! !:!! luIleGluIleIleArgLysTyrAlaAsnGlyGlyArgArgPheThrLeuAlaIleAl 456881 : AAATCGagattattcgaaaatatgcGAACGGTGGCAGGAGATTTACACTTGCAATAGC : 456937 128 : e{V} >>>> Target Intron 1 >>>> {al}CysCysHisCysGlyIleLeu : 135 !{:} 214 bp {!!}! ! !:!!|||||| !||| a{I}++ ++{le}SerThrTyrCysGlyAlaLeu 456938 : A{A}gt.........................ag{TT}TCTACTTATTGTGGCGCACTG : 457175 136 : CysTyrIleThrLeuGlnLeuLeuProLeuIleLeuAsnValIleAlaProLeuAsnG : 155 ! !! !||||||||||||!!!|||:!!:!!|||:!!:!!:!:!.!|||||||||| ValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnG 457176 : GTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACG : 457235 156 : luSerArgSerValLysLeuIleAlaThrThrGluTyrPheLeuAsnArgGluLysTy : 174 |||||||| !! !:!!||| ! !|||.!!|||||||||:!!:!!! !:!!||||| luSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTy 457236 : AATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTA : 457292 175 : rIleTrpIleMetLeuLeuHisGluIleValThrAlaTyrLeuArgLeuIleThrLeu : 193 |!!: !!!::!! !||| |||..! ! ! :!! ! !! !|||||| rMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeu 457293 : TATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTA : 457349 194 : CysSerIleSerMetThrLeuLeuMetGlnIleLeuHisAlaCysAlaLeuPheAsnI : 213 :!!! !..! !|||:!!! !.!.:!!||||||!.!|||!.!||||||!!.: ThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysL 457350 : ACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGC : 457409 214 : le : 213 !! eu 457410 : TT : 457411 vulgar: CbirOr283 88 213 . KQ414815.1 456822 457411 + 244 M 39 117 S 0 1 5 0 2 I 0 210 3 0 2 S 1 2 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 456823 457411 244 + . gene_id 1 ; sequence CbirOr283 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 456823 456940 . + . KQ414815.1 exonerate:protein2genome:local exon 456823 456940 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 456941 456942 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 456941 457154 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457153 457154 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457155 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457155 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 456823 457411 244 + . alignment_id 1 ; Query CbirOr283 ; Align 456823 89 117 ; Align 457157 129 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr283 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 87 -> 283 Target range: 475307 -> 476361 88 : AsnValLysGlnLeuValGluGlnIleArgHisAspTrpLysLeuValLysSerLysL : 107 .!.||||||||||||:!!|||:!!|||!:!:!!||||||! ! !:!!!!...!:!! GlnValLysGlnLeuMetGluLysIleLysTyrAspTrpMetThrIleAsnAspGluG 475308 : CAGGTGAAGCAGTTAATGGAGAAGATAAAGTACGATTGGATGACGATCAACGACGAGG : 475365 108 : euGluIleAspIleIleLysLysTyrAlaGluAsnGlyArgPheValThrIleIleVa : 126 !|||:!! |||:::|||... ||| ! !..|||!:! !!||||||||| ! lyGluLeuArgIleLeuLysAsnAsnAlaTyrArgGlyLysGlyPheThrIleIlePh 475366 : GAGAGCTTagaatcttgaaaaataacgCTTACAGAGGAAAAGGATTCACGATCATTTT : 475422 127 : lIle{V} >>>> Target Intron 1 >>>> {al}CysCysHisCysGlyIle : 134 ! !{:} 85 bp {!!} :!! !||| eAla{L}++ ++{eu}LeuValTyrProThrIle 475423 : CGCA{T}gt.........................ag{TA}CTGGTATACCCAACAATA : 475531 135 : LeuCysTyrIleThrLeuGlnLeuLeuProLeuIleLeuAsnValIleAlaProLeuA : 154 !!! ! ||| !|||! !!!! ! !! !||||||:!! !:!: !||||||| PheThrMetIleLeuLeuLeuPheSerSerLysIleLeuAspSerLeuLeuProLeuA 475532 : TTCACCATGATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTACCCCTGA : 475591 155 : snGluSerArgSerValLysLeuIleAlaThrThrGluTyrPheLeuAsnArgGluLy : 173 ||||||||||| !! ! !! !:!: |||||||||:::|||..!:!!|| snGluSerArgProSerTrpSerLeuIleArgIleGluTyrPheIleAsnGluGlnLy 475592 : ACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaatagaatatttcataaacGAACAGAA : 475648 174 : sTyrIleTrpIleMetLeuLeuHisGluIleValThrAlaTyrLeuArgLeuIleThr : 192 ||||.!!!:::!:! :!!:!!:!!:!!! !|||||| ! !||| ! !! !||| sTyrPheTyrLeuSerValIleTyrGlnThrValThrIleLeuLeuPheGlyThrThr 475649 : ATACTTTTATCTGAGCGTGATCTATCAGACTGTAACGATCCTTCTGTTTGGTACCACG : 475705 193 : LeuCysSerIleSerMetThrLeuLeuMetGlnIleLeuHisAlaCysAlaLeuPheA : 212 ! ! :!!! !..! ! !!!! !||| !:!:! !|||..! :::||||||. TyrValAlaThrGluAlaIlePheThrMetTrpLeuGlnHisCysIleSerLeuPheG 475706 : TACGTAGCAACTGAAGCAATATTTACCATGTGGTTGCAACATTGCATaagtttatttg : 475765 213 : snIleAlaSerTyr >>>> Target Intron 2 >>>> LeuMetGluAsnAla : 221 ..|||... !!! 381 bp !|||..!.!.... luIleValArg***++ ++LysMetSerGluVal 475766 : aaattgttagGTAAgt.........................agAAAATGTCGGAAgta : 476173 222 : IleProGluAsnValLeuAlaIleHisAspSerLeuLysGluHisIleLeuHisGlnA : 241 ::: |||.!! ! !|||:!!! !||| !!! !.!!:!! ! ! AsnSerLysIleHisLeuThrArgPheAspAlaTrpLys***LeuPheValPheThrL 476174 : aattctaaaatacatCTGACACGTTTTGACGCCTGGAAATAACTTTTCGTTTTCACTA : 476233 242 : rgIleAlaHisValValLeuIleHisArgArgAlaIleSerPheIleGlnLeuTrpIl : 260 :!.!! :::::: ||| ::: !!!||| !:!! !! !! ysPheHisTyrLeuPheLeuTyrPheLeuIleSer***ArgPheCysGluLysLeuAr 476234 : AATTTCattatctttttctttatttcctaatttcttaaAGGTTCTGCGAAAAATTGAG : 476290 261 : eSerSerPheAlaValProPhePheIleMetIleLeuValGlyValCysSerLeuSer : 279 ! ! !|||.!!:!! !!!:!! ! !:!::!!:!!:!!|||||| |||:!!||| gIleHisPheThrLeuAlaTyrSerCysLeuLeuIleLeuGlyValIleSerValSer 476291 : GATTCATTTCACGTTAGCGTATTCTTGTCTTCTTATCTTAGGTGTGATATCTGTAAgc : 476347 280 : ValAsnLeuPhe : 283 |||||||||||| ValAsnLeuPhe 476348 : gttaatttattt : 476361 vulgar: CbirOr283 87 283 . KQ414815.1 475307 476361 + 172 M 40 120 S 0 1 5 0 2 I 0 81 3 0 2 S 1 2 M 88 264 5 0 2 I 0 377 3 0 2 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475308 476361 172 + . gene_id 2 ; sequence CbirOr283 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 475308 475428 . + . KQ414815.1 exonerate:protein2genome:local exon 475308 475428 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 475429 475430 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 475429 475513 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 475512 475513 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 475514 475779 . + . KQ414815.1 exonerate:protein2genome:local exon 475514 475779 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 475780 475781 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 475780 476160 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 476159 476160 . + . intron_id 1 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 476161 476361 . + . KQ414815.1 exonerate:protein2genome:local exon 476161 476361 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475308 476361 172 + . alignment_id 2 ; Query CbirOr283 ; Align 475308 88 120 ; Align 475516 129 264 ; Align 476161 217 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr283 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 333 -> 392 Target range: 445817 -> 446067 334 : TyrAsnGlyLeuTrpTyrValAlaProLeuArgThrGlnLysLeuIleLeuPheValM : 353 ||||||..! !|||||| !!.!||||||!!!.!!|||||||||:!!||||||:!!| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 354 : etGlnArgGlyThrValLysValAsnLeuThrCysGlyHisMetPheValAlaSerLe : 372 ||..!!:!.!!|||:!! ! !!!.:!!!.! !..! !!!:|||!.! !!!!!! etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 373 : uGluGlyPheLeuThr >>>> Target Intron 1 >>>> LeuValSerThrA : 382 !:!!||||||! !:!! 73 bp :!!:!!||||||: rLysGlyPheSerSer++ ++MetIleSerThrS 445933 : CAAAGGTTTTTCCTCGgt.........................agATGATAAGCACTT : 446035 383 : laIleSerTyrPheThrValIleTyrSerThr : 392 !!.!!|||||| !!|||!.!|||||||||||| erPheSerTyrValThrAlaIleTyrSerThr 446036 : CTTTCTCGTATGTCACAGCGATATATTCGACT : 446067 vulgar: CbirOr283 333 392 . KQ414815.1 445817 446067 + 136 M 44 132 5 0 2 I 0 69 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 446067 136 + . gene_id 3 ; sequence CbirOr283 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 445818 445949 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445949 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445950 445951 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445950 446022 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 446021 446022 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 446023 446067 . + . KQ414815.1 exonerate:protein2genome:local exon 446023 446067 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 446067 136 + . alignment_id 3 ; Query CbirOr283 ; Align 445818 334 132 ; Align 446023 378 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr283 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 0 -> 100 Target range: 447014 -> 447731 1 : MetGlnAspIleGluGluArgTyrTyrLysValSerAspThrPheLeuLysMetIleG : 20 |||.!. !:!!! ! ! ..!||||||!..:!!!:!.!. !.!!|||! !:!!:!!| MetAspPheLeuGlyTyrGluTyrTyrSerLeuAsnGlnGlnLeuLeuThrLeuValG 447015 : ATGGACTTCCTCGGGTACGAGTACTATAGCCTCAATCAACAGCTTTTGACGTTGGTCG : 447072 21 : lyLeuTrpProTyrGlnLysThrLysPheValArgIleGlnAsnValLeuIleIleGl : 39 ||||||||||||||:!!!:! !|||!!...! !:!! ! |||..!! !!!::!: lyLeuTrpProTyrLysArgTyrLysLeuThrPheLeuTyrAsnThrTyrMetLeuPh 447073 : GACTGTGGCCGTACAAGAGGTACAAGTTGACATTCCTTTACAATACCTACATGCTGTT : 447129 40 : yIleLeuCysGlyTyrIleIleValGln >>>> Target Intron 1 >>>> L : 49 !.!!!!! ! ! !.!!.!!:!!||| 420 bp : ePhePheIleThrAlaPhePheLeuGln++ ++I 447130 : CTTCTTCATCACCGCTTTCTTTCTTCAGgt.........................aga : 447579 50 : euLeuSerPheLeuThrMetGlnPheSerValAsnLeuLeuLeuLysValLeuSerPh : 68 ::::: |||...|||! :!!!!...!|||:!! !:!!|||!..! ! !:!!! leMetIlePhePheThrThrGluLeuAspValAspThrIleLeuSerAspGlyAlaCy 447580 : taatgatatttttcaccACAGAATTAGACGTTGATACGATTTTAAGTGATGGTGCCTG : 447636 69 : eValPheProThrLeuPheMetValIleLysTyrCysThrPheIleIleGlnAlaAsp : 87 !:!!.!! ! !|||.!! :!!:!:||||||||||||||| !! |||||| ! sIleIleMetLeuLeuIleTyrIleValLysTyrCysThrPheCysLysGlnAlaLys 447637 : TATAATCATGTTGCTCATCTACATAGTGAAATACTGCACGTTCTGCAAGCAGGCCAAA : 447693 88 : AsnValLysGlnLeuValGluGlnIleArgHisAspTrp : 100 |||||| ...! !|||.!.:!!||| !||| !!||| AsnVal---SerCysValAsnGluIleAlaHisTyrTrp 447694 : AACGTG---AGTTGTGTGAACGAAATTGCACATTATTGG : 447731 vulgar: CbirOr283 0 100 . KQ414815.1 447014 447731 + 129 M 48 144 5 0 2 I 0 416 3 0 2 M 41 123 G 1 0 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 447015 447731 129 + . gene_id 4 ; sequence CbirOr283 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 447015 447158 . + . KQ414815.1 exonerate:protein2genome:local exon 447015 447158 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 447159 447160 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 447159 447578 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 447577 447578 . + . intron_id 0 ; splice_site "Ag" KQ414815.1 exonerate:protein2genome:local cds 447579 447731 . + . KQ414815.1 exonerate:protein2genome:local exon 447579 447731 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 447015 447731 129 + . alignment_id 4 ; Query CbirOr283 ; Align 447015 1 144 ; Align 447579 49 123 ; Align 447702 91 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr283 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 132 -> 213 Target range: 481992 -> 482235 133 : GlyIleLeuCysTyrIleThrLeuGlnLeuLeuProLeuIleLeuAsnValIleAlaP : 152 ..!:!:||| ||| !! !!!.:!!! ! !!!!:!!|||:!!||||||!.!| SerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValP 481993 : TCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTC : 482050 153 : roLeuAsnGluSerArgSerValLysLeuIleAlaThrThrGluTyrPheLeuAsnAr : 171 |||||||||||!!!|||!!! !:!!!!! !!.!:!!! !|||||||||:!!:!!!: roLeuAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGl 482051 : CTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCA : 482107 172 : gGluLysTyrIleTrpIleMetLeuLeuHisGluIleValThrAlaTyrLeuArgLeu : 190 !:!!|||||| ! .!!!!: !!!!|||:!! !!:!! ! !:!! ! ! nGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAla 482108 : GCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCA : 482164 191 : IleThrLeuCysSerIleSerMetThrLeuLeuMetGlnIleLeuHisAlaCysAlaL : 210 ! ! !:!! !.!!|||..!! !:!!:!!||| !:!! !||||||...::!| ThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerL 482165 : ACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCT : 482224 211 : euPheAsnIle : 213 |||||!.!:!! euPheThrLeu 482225 : TGTTCACCCTT : 482235 vulgar: CbirOr283 132 213 . KQ414815.1 481992 482235 + 110 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481993 482235 110 + . gene_id 5 ; sequence CbirOr283 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481993 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481993 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481993 482235 110 + . alignment_id 5 ; Query CbirOr283 ; Align 481993 133 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr283 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 125 -> 213 Target range: 464573 -> 464840 126 : ValIleValCysCysHisCysGlyIleLeuCysTyrIleThrLeuGlnLeuLeuProL : 145 :!! !||||||! ! ! !! !||||||! ! ! ! !|||:!!:!!|||||| IleProValCysPheIleProValIleLeuPheIleCysLeuLeuGluValLeuProA 464574 : ATTCCAGTGTGCTTCATTCCCGTTATACTGTTCATCTGTTTACTCGAAGTATTGCCAG : 464631 146 : euIleLeuAsnValIleAlaProLeuAsnGluSerArgSerValLysLeuIleAlaTh : 164 !||||||:!!|||:!!|||||||||||||||||||||||| !:!!! !:!! !|| spIleLeuAspValValAlaProLeuAsnGluSerArgSerHisGlnTyrLeuIleTh 464632 : ATATTCTCGACGTGGTTGCGCCCCTCAATGAATCTCGTTCTCATCAATACTTAATTAC : 464688 165 : rThrGluTyrPheLeuAsnArgGluLysTyrIleTrpIleMet<->LeuLeuHisGlu : 182 |.!!|||!:!|||:!!!.! !.....! ! !!::|||:!: ! !:!! ! ! rAlaGluPhePheIleThrAspSerSerProAsnTyrIleValThrCysValGlyThr 464689 : CGCGGAATTTTTCATCACTGATAGTTCGCCGAATTATATCGTAACTTGTGTTGGTACG : 464745 183 : IleValThrAlaTyrLeuArgLeuIleThrLeuCysSerIleSerMetThrLeuLeuM : 202 !:!!||| ! !:!! !!:!!! |||:!! !:!! !..!! ! ! !!!!: AspIleThrLeuIleMetGlyValThrThrIleIleAlaSerGluThrPheThrPheL 464746 : GATATTACTCTTATCATGGGAGTCACGACAATAATTGCCTCCGAAACGTTCACTTTTT : 464805 203 : etGlnIleLeuHisAlaCysAlaLeuPheAsnIle : 213 !! !:!:! !||| !||||||:!!|||!!.||| euLeuLeuGlnHisIleCysAlaMetPheLysIle 464806 : TGTTGCTGCAACATATCTGCGCAATGTTCAAAATC : 464840 vulgar: CbirOr283 125 213 . KQ414815.1 464573 464840 + 107 M 53 159 G 0 3 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464574 464840 107 + . gene_id 6 ; sequence CbirOr283 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464574 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464574 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464574 464840 107 + . alignment_id 6 ; Query CbirOr283 ; Align 464574 126 159 ; Align 464736 179 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr283 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 283 -> 333 Target range: 458089 -> 458239 284 : HisLeuLeuGluLeuIleThrValThrAspAspValAsnGluMetTyrAlaValPheM : 303 !!.||||||||| !:!!! !!.!! !!!::!!:!!!!.|||:!! |||!.!.!.: GlnLeuLeuGluGluValIleAlaMetGluAsnMetLysGluLeuLeuAlaAlaMetL 458090 : CAGTTACTCGAAGAGGTTATAGCAATGGAAAACATGAAGGAGCTGCTAGCTGCTATGC : 458147 304 : etSerValIleLeuHisPheAsnPheMetPheIleLeuAsnTyrAlaGlyGluIleVa : 322 !: !:!!||| !|||||| !!:!! |||:!: !||||||||||||:!!||||| euLeuMetIleSerHisPheLeuTyrThrPheLeuAlaAsnTyrAlaGlyGlnIleVa 458148 : TACTCATGATCAGTCACTTCCTTTACACATTTCTGGCGAACTATGCCGGGCAAATCGT : 458204 323 : lGlnAsnHisGlyMetGlnValPheGlyAlaThr : 333 |..!:!!|||.!!!!:.!.||||||! ! !||| lMetAspHisSerIleAspValPheAspLysThr 458205 : GATGGATCACAGTATCGACGTTTTCGATAAAACG : 458239 vulgar: CbirOr283 283 333 . KQ414815.1 458089 458239 + 104 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458090 458239 104 + . gene_id 7 ; sequence CbirOr283 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 458090 458239 . + . KQ414815.1 exonerate:protein2genome:local exon 458090 458239 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458090 458239 104 + . alignment_id 7 ; Query CbirOr283 ; Align 458090 284 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr283 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 333 -> 379 Target range: 441705 -> 441843 334 : TyrAsnGlyLeuTrpTyrValAlaProLeuArgThrGlnLysLeuIleLeuPheValM : 353 ||||||..! !|||||| !!.!||||||!!!.!!|||||||||:!!||||||:!!| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 354 : etGlnArgGlyThrValLysValAsnLeuThrCysGlyHisMetPheValAlaSerLe : 372 ||..!!:!.!!|||:!! ! !!!.:!!!.! !..! !!!:|||!.! !!!!!! etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 373 : uGluGlyPheLeuThrLeuVal : 379 !:!!||||||! !:!!:!!:!! rLysGlyPheSerSerValIle 441821 : CAAAGGTTTTTCCTCGGTAATT : 441843 vulgar: CbirOr283 333 379 . KQ414815.1 441705 441843 + 100 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441843 100 + . gene_id 8 ; sequence CbirOr283 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441706 441843 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441843 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441843 100 + . alignment_id 8 ; Query CbirOr283 ; Align 441706 334 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr264PI(S) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 81 -> 213 Target range: 464367 -> 464840 82 : PhePhePheAsnIleGluCysIleArgGlnSerPheGluHisIleGlnLeuAspTrpG : 101 !:! ! |||! !:!: !! :!:|||! ! !||| !!..:!:::!! !||||||. TyrValPheIleVal******ValArgLeuLeuPheLeuArgValArgTyrAspTrpA 464368 : TATGTATTCATCGTGTGATAGGTGAGACTGCTTTTTTTACGGGTGAGATATGACTGGA : 464425 102 : luThrLeuGluAspAsnAsnGluMetGluIleLeuLysLysTyrThrTyrValAlaTy : 120 !.||||||:!!:!!!..:!!||| .!.|||||||||||||||||| ! !||| snThrLeuGlnAsnThrAspGluTyrAsnIleLeuLysLysTyrThrGluSerAlaTh 464426 : ACACGCTACAAAACACGGATGAATATAATATTCTGAAAAAGTATACCGAGAGCGCTAC : 464482 121 : rValPheThrIleIleLeuSer{I} >>>> Target Intron 1 >>>> {le} : 128 :!! !!!.!! !|||! !! !{!} 74 bp {!:} rLeuValAsnLysIleHisLeu{M}++ ++{et} 464483 : ACTTGTTAACAAAATCCACTTA{A}gt.........................ag{TG} : 464581 129 : SerPheIleAlaGlyIleCysAlaPheAlaLeuPheGluCysThrProIleIleLeuA : 148 !!!|||||| !!! !||| !.!!..!|||.!!||| !||| !||||||| CysPheIleProValIleLeuPheIleCysLeuLeuGluValLeuProAspIleLeuA 464582 : TGCTTCATTCCCGTTATACTGTTCATCTGTTTACTCGAAGTATTGCCAGATATTCTCG : 464640 149 : spValIleAlaProLysGluLysSerLeuProArgArgIleSerIleProIleGluPh : 167 |||||:!!|||||| .!.:!!|||! ! !!!.!!:! !! !||| !! ||||| spValValAlaProLeuAsnGluSerArgSerHisGlnTyrLeuIleThrAlaGluPh 464641 : ACGTGGTTGCGCCCCTCAATGAATCTCGTTCTCATCAATACTTAATTACCGCGGAATT : 464697 168 : ePheVal<->AspGlnGluGluHisPhePheLeuTyrLeuIleSerGluValLeuGly : 185 ||||:!! |||.....! !:!!!:!.!!:!! !! !:!!.!! !! !:!! ! ePheIleThrAspSerSerProAsnTyrIleValThrCysValGlyThrAspIleThr 464698 : TTTCATCACTGATAGTTCGCCGAATTATATCGTAACTTGTGTTGGTACGGATATTACT : 464754 186 : ValPhePheGlyIleTrpSerThrIleAlaThrGlyAlaPheLeuAlaAlaIleGlyG : 205 :!!.!!.!.|||:!! !!!!! !||||||:!!! !.!!||| ! ! !:!: !| LeuIleMetGlyValThrThrIleIleAlaSerGluThrPheThrPheLeuLeuLeuG 464755 : CTTATCATGGGAGTCACGACAATAATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGC : 464814 206 : lnHisCysCysGlyThrTyrLysIle : 213 ||||| !|||!.!! !!:!|||||| lnHisIleCysAlaMetPheLysIle 464815 : AACATATCTGCGCAATGTTCAAAATC : 464840 vulgar: CbirOr264PI(S) 81 213 . KQ414815.1 464367 464840 + 157 M 46 138 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 41 123 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464368 464840 157 + . gene_id 1 ; sequence CbirOr264PI(S) ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 464368 464506 . + . KQ414815.1 exonerate:protein2genome:local exon 464368 464506 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 464507 464508 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 464507 464580 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 464579 464580 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 464581 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464581 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464368 464840 157 + . alignment_id 1 ; Query CbirOr264PI(S) ; Align 464368 82 138 ; Align 464583 129 123 ; Align 464709 170 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr283 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 332 -> 391 Target range: 128560 -> 128309 333 : ThrTyrAsnGlyLeuTrpTyrValAlaProLeuArgThrGlnLysLeuIleLeuPheV : 352 !:!||| !!.! !|||||| !||||||:::::::::||||||::::!!||||||: SerTyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheL 128560 : AGCTATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCC : 128503 353 : alMetGlnArgGlyThrValLysValAsnLeuThrCysGlyHisMetPheValAlaSe : 371 !!|||!!.||| !! !! ! ! !!..|||! ! ! !:!: !!!.!|||.! euMetHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGl 128502 : TCATGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGG : 128446 372 : rLeuGluGlyPheLeuThr >>>> Target Intron 1 >>>> LeuValSerT : 381 ! !||| !!:! !||| 74 bp :!!|||..!| yAsnGluLeuTyrAlaThr++ ++MetValGlnT 128445 : TAACGAGTTGTACGCTACCgt.........................agaTGGTGCAGA : 128342 382 : hrAlaIleSerTyrPheThrValIleTyrSer : 391 ||!.!.!!|||||||||||||||:!!|||||| hrGlyPheSerTyrPheThrValLeuTyrSer 128341 : CTGGTTTCTCCTACTTTACGGTTCTCTACTCG : 128310 vulgar: CbirOr283 332 391 . KQ414817.1 128560 128309 - 106 M 45 135 5 0 2 I 0 70 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128310 128560 106 - . gene_id 1 ; sequence CbirOr283 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128560 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128560 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128310 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128310 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128310 128560 106 - . alignment_id 1 ; Query CbirOr283 ; Align 128561 333 135 ; Align 128352 378 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr278 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 340 -> 400 Target range: 128557 -> 128303 341 : TyrAsnLeuProTrpTyrIleAlaProLeuAsnValGlnLysLeuLeuIlePheLeuL : 360 ||| ! ! !||||||! !||||||:::... ||||||:::|||:!:||||||: TyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheLeuM 128557 : TATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCCTCA : 128500 361 : euGlnLysGlyThrLysThrPheTyrLeuSerLeuSerGlyLeuPheAspAlaSerTy : 379 !!!!.!:! !! !:!! !!! ! |||!.!|||!.!..!||| !!! !|||.!! ! etHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGlyAs 128499 : TGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGGTAA : 128443 380 : rGlnGlyPheThrSer >>>> Target Intron 1 >>>> LeuSerMetThrS : 389 !:!! !!:!.!!!!! 74 bp :!! !..!|||. nGluLeuTyrAlaThr++ ++MetValGlnThrG 128442 : CGAGTTGTACGCTACCgt.........................agaTGGTGCAGACTG : 128339 390 : erIleSerTyrPheThrValLeuTyrSerIleGln : 400 !!.!!||||||||||||||||||||||||:!:||| lyPheSerTyrPheThrValLeuTyrSerLeuGln 128338 : GTTTCTCCTACTTTACGGTTCTCTACTCGTTGCAA : 128304 vulgar: CbirOr278 340 400 . KQ414817.1 128557 128303 - 103 M 44 132 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128304 128557 103 - . gene_id 1 ; sequence CbirOr278 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128557 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128557 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128304 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128304 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128304 128557 103 - . alignment_id 1 ; Query CbirOr278 ; Align 128558 341 132 ; Align 128352 385 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr272PI Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 293 -> 353 Target range: 128560 -> 128306 294 : AlaTyrAsnThrMetTrpTyrLeuAlaProLeuProIleGlnLysLeuLeuLeuPheV : 313 ::!||| !.!!! |||||| !||||||::: ||||||:::|||||||||: SerTyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheL 128560 : AGCTATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCC : 128503 314 : alMetGlnAsnSerMetLysAlaHisAlaLeuLeuLeuGlyGlyIleTyrValSerCy : 332 !!|||!!.!..! !|||:!! !! ! !||| !||| !..!:!! !!.!:!! ! euMetHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGl 128502 : TCATGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGG : 128446 333 : sLeuGluGlyPheSerThr >>>> Target Intron 1 >>>> LeuValThrT : 342 ! !||| !!:!:!!||| 74 bp :!!||| !| yAsnGluLeuTyrAlaThr++ ++MetValGlnT 128445 : TAACGAGTTGTACGCTACCgt.........................agaTGGTGCAGA : 128342 343 : hrSerIleSerTyrPheThrValMetTyrSerMet : 353 ||.!!.!!|||||||||||||||:!:||||||:!! hrGlyPheSerTyrPheThrValLeuTyrSerLeu 128341 : CTGGTTTCTCCTACTTTACGGTTCTCTACTCGTTG : 128307 vulgar: CbirOr272PI 293 353 . KQ414817.1 128560 128306 - 107 M 45 135 5 0 2 I 0 70 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128307 128560 107 - . gene_id 1 ; sequence CbirOr272PI ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128560 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128560 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128307 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128307 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128307 128560 107 - . alignment_id 1 ; Query CbirOr272PI ; Align 128561 294 135 ; Align 128352 339 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr282 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 334 -> 395 Target range: 128557 -> 128300 335 : TyrAsnGlyLeuTrpTyrAlaAlaProLeuHisThrGlnLysLeuLeuLeuPheLeuM : 354 ||| !!.! !|||||| !||||||::: :::||||||:::||||||||||||| TyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheLeuM 128557 : TATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCCTCA : 128500 355 : etGlnLysAlaAlaValLysValThrLeuValCysGlySerIlePheValAlaSerLe : 373 ||!!.!:! ! !! ! ! !! !||| ! !|||:!! !!!.!|||.!! etHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGlyAs 128499 : TGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGGTAA : 128443 374 : uGluGlyPheValThr >>>> Target Intron 1 >>>> LeuValSerSerA : 383 !||| !!:!!.!||| 74 bp :!!|||..!!!!! nGluLeuTyrAlaThr++ ++MetValGlnThrG 128442 : CGAGTTGTACGCTACCgt.........................agaTGGTGCAGACTG : 128339 384 : laValSerTyrPheThrValMetTyrSerThrArgGln : 395 .! !!|||||||||||||||:!:|||||| !!:!:!! lyPheSerTyrPheThrValLeuTyrSerLeuGlnGlu 128338 : GTTTCTCCTACTTTACGGTTCTCTACTCGTTGCAAGAA : 128301 vulgar: CbirOr282 334 395 . KQ414817.1 128557 128300 - 107 M 44 132 5 0 2 I 0 70 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128301 128557 107 - . gene_id 1 ; sequence CbirOr282 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128557 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128557 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128301 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128301 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128301 128557 107 - . alignment_id 1 ; Query CbirOr282 ; Align 128558 335 132 ; Align 128352 379 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr288PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 137 -> 207 Target range: 1243836 -> 1243626 138 : PheAlaIleLeuHisPheLeuProLeuMetLeuAspValIleLeuProLeuAsnGl : 156 |||!.!:!!!!!! !!.:!!|||! !!!:|||||||||:!!! !||||||||||| PheValLeuPheProLeuIleProProIleLeuAspValValSerProLeuAsnGl 1243836 : TTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGA : 1243782 157 : uSerArgProLeuGlnPheIleValThrMetGluTyrLeuIleAsnGlnGluGluT : 175 |!!!||| !!! ! ! :::::: ::::::||||||.!!:!!...|||::: uThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspMetGluLysA 1243781 : GACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACAtggagaaga : 1243725 176 : yrPheTyrIleIlePheLeuHisValGlyLeuThrPheValValSerMetIleAla : 193 |||||| :::::::!!:!!..!|||! ! !! !!:!!!!!|||!!:!.! snPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMetVal 1243724 : atttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTT : 1243671 194 : IleGlyIleThrThrAlaThrIleMetLeuTyrIleLeuHis : 207 ||| !! !! ! !||| ! !:!!:!! !|||! !||| IleIleThrIleAspAlaLeuTyrValValIleIleHisHis 1243670 : ATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCAC : 1243627 vulgar: CbirOr288PSE 137 207 . KQ414851.1 1243836 1243626 - 108 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243627 1243836 108 - . gene_id 1 ; sequence CbirOr288PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243627 1243836 . - . KQ414851.1 exonerate:protein2genome:local exon 1243627 1243836 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243627 1243836 108 - . alignment_id 1 ; Query CbirOr288PSE ; Align 1243837 138 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr288PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 120 -> 208 Target range: 1229515 -> 1229248 121 : ArgSerLeuThrLeuPheAlaMetAlaPheCysHisCysAlaMetPheProPheAl : 139 ..!|||! !! !:!!|||:!!:!:! ! !! ! !! !||||||! ! !||| GluSerSerIleValPheSerLeuAspAlaLeuLeuPheAlaMetCysValPheLe 1229515 : GAAAGTTCCATCGTATTTTCCTTAGATGCTTTACTCTTCGCAATGTGTGTTTTCTT : 1229461 140 : aIleLeuHisPheLeuProLeuMetLeuAspValIleLeuProLeuAsnGluSerA : 158 !:!::!!! !!.!!! !! ! ||||||:!!:!!||||||! !||||||!!!| uLeuValProLeuPheGlyProAlaLeuAspIleValLeuProSerAsnGluThrA 1229460 : GCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCGTCCTTCCATCAAATGAAACTA : 1229404 159 : rgProLeuGlnPheIleValThrMetGluTyrLeuIle<->AsnGlnGluGluTyr : 175 |||||! !||| :!: !!! !:!:.!.|||:!!||| :!!|||! !!!:||| rgProArgGlnGlnLeuPheArgValAsnTyrIleIlePheAspGlnAlaAspTyr 1229403 : GGCCACGGCAACAACTGTTCAGAGTTAACTATATAATTTTCGACCAAGCAGACTAT : 1229350 176 : PheTyrIleIlePheLeuHisValGlyLeuThrPheValValSerMetIleAlaIl : 194 |||!:! !:!:!:!:!!!!.:!! !! ! ! :!!||| !:!:!!:||||| PhePheTyrValTyrIleGlnLeuPheTrpCysThrIleValLeuValMetAlaIl 1229349 : TTTTTCTACGTGTATATTCAATTGTTTTGGTGTACAATCGTTCTTGTAATGGCCAT : 1229293 195 : eGlyIleThrThrAlaThrIleMetLeuTyrIleLeuHisAla : 208 | !! !..! !:!! ! !|||:!! |||! !|||||| eIleThrValAspSerLeuTyrMetIleIleIleTyrHisAla 1229292 : TATCACCGTAGATTCATTGTACATGATCATAATTTACCATGCC : 1229249 vulgar: CbirOr288PSE 120 208 . KQ414851.1 1229515 1229248 - 103 M 50 150 G 0 3 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229249 1229515 103 - . gene_id 2 ; sequence CbirOr288PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229249 1229515 . - . KQ414851.1 exonerate:protein2genome:local exon 1229249 1229515 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229249 1229515 103 - . alignment_id 2 ; Query CbirOr288PSE ; Align 1229516 121 150 ; Align 1229363 171 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr272PI Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 290 -> 352 Target range: 1242808 -> 1242530 291 : PheTyrAlaAlaTyrAsnThrMetTrpTyrLeuAlaProLeuProIleGlnLysLe : 309 ||| ! !||||||:!!|||||||||! !.!!|||:!! !|||||||||:! PheThrAsnArgTyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIl 1242808 : tttaccAATAGATATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAAT : 1242754 310 : uLeuLeuPheValMetGlnAsnSerMetLysAlaHisAlaLeuLeuLeuGlyGlyI : 328 !|||! !.!.|||... !!..||| ||| !! ! !|||:!! !||||||: eLeuHisIleValGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyL 1242753 : ACTTCATATAGTACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGAT : 1242697 329 : leTyrValSerCysLeuGluGlyPheSerThr >>>> Target Intron 1 > : 339 !!|||! !! ! !:!!|||..!|||.!!:!! 92 bp euTyrGluMetAsnIleGluAsnPheGlySer++ 1242696 : TATACGAAATGAACATTGAGAATTTTGGATCAgt...................... : 1242662 340 : >>> LeuValThrThrSerIleSerTyrPheThrValMetTyrSer : 352 ! !!! !|||!!!|||||||||||||||:!!:!:! ||| ++ThrPheLysThrCysIleSerTyrPheThrMetLeuLeuSer 1242661 : ...agacTTTCAAAACCTGCATATCGTACTTTACGATGCTCTTATCA : 1242531 vulgar: CbirOr272PI 290 352 . KQ414851.1 1242808 1242530 - 111 M 48 144 5 0 2 I 0 88 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242531 1242808 111 - . gene_id 1 ; sequence CbirOr272PI ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1242665 1242808 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242808 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242531 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242531 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242531 1242808 111 - . alignment_id 1 ; Query CbirOr272PI ; Align 1242809 291 144 ; Align 1242573 339 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr283 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 134 -> 213 Target range: 1243842 -> 1243605 135 : LeuCysTyrIleThrLeuGlnLeuLeuProLeuIleLeuAsnValIleAlaProLe : 153 :!! !:!:!! !!!!! !|||:!!|||! !||||||:!!|||:!!:!!||||| IleIlePheValLeuPheProLeuIleProProIleLeuAspValValSerProLe 1243842 : ATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCT : 1243788 154 : uAsnGluSerArgSerValLysLeuIleAlaThrThrGluTyrPheLeuAsnArgG : 172 |||||||!!!|||||| !! ! ::: :::|||.!.!!!:!!! | uAsnGluThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspMetG 1243787 : TAATGAGACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACAtgg : 1243731 173 : luLysTyrIleTrpIleMetLeuLeuHisGluIleValThrAlaTyrLeuArgLeu : 190 ||||| ...::: ::: :!!:!! ! ! !:!!!:!:!!! !:!! luLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMet 1243730 : agaagaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATG : 1243677 191 : IleThrLeuCysSerIleSerMetThrLeuLeuMetGlnIleLeuHisAlaCysAl : 209 !!:..!:!! !!!!|||..! ! !! !:!!:!: |||! !|||.!!|||!. MetValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGl 1243676 : ATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGG : 1243620 210 : aLeuPheAsnIle : 213 !|||||| !:!! yLeuPheAlaVal 1243619 : CTTATTCGCTGTT : 1243606 vulgar: CbirOr283 134 213 . KQ414851.1 1243842 1243605 - 106 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243842 106 - . gene_id 1 ; sequence CbirOr283 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243842 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243842 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243842 106 - . alignment_id 1 ; Query CbirOr283 ; Align 1243843 135 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr286 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 133 -> 213 Target range: 1243845 -> 1243605 134 : ThrLeuCysTyrIleThrLeuGlnPheLeuProLeuIleLeuAspValIleLeuPr : 152 :!!:!! !:!:!! !!!!! !!!.:!!|||! !||||||||||||:!!! !|| SerIleIlePheValLeuPheProLeuIleProProIleLeuAspValValSerPr 1243845 : TCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACC : 1243791 153 : oLeuAsnGluSerArgSerLeuLysLeuIleValIleThrGluTyrPheValAsnA : 171 ||||||||||!!!||||||! !! ! :::::: :::|||.!. !!:!!! oLeuAsnGluThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspM 1243790 : GCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACA : 1243734 172 : rgGluLysTyrLeuTrpLeuMetLeuLeuHisGluIleValAlaIleTyrLeuArg : 189 |||||| ...::: ::: :!!:!! ! !..! !:!:!!! ! etGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThr 1243733 : tggagaagaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACC : 1243680 190 : ValIleThrIleCysCysThrThrThrThrIleMetMetTyrIleLeuHisAlaCy : 208 :!!!!:..!||| ! !! ! !.!! ! !:!!:!: !|||! !|||.!!|| MetMetValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCy 1243679 : ATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTG : 1243623 209 : sAlaLeuPheLysVal : 213 |!.!|||||| ||| sGlyLeuPheAlaVal 1243622 : TGGCTTATTCGCTGTT : 1243606 vulgar: CbirOr286 133 213 . KQ414851.1 1243845 1243605 - 103 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243845 103 - . gene_id 1 ; sequence CbirOr286 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243845 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243845 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243845 103 - . alignment_id 1 ; Query CbirOr286 ; Align 1243846 134 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr264PI(S) Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 88 -> 213 Target range: 1225871 -> 1224030 89 : IleArgGlnSerPheGluHisIleGlnLeuAspTrpGluThrLeuGluAspAsnAs : 107 ...|||::: |||::: !!!: !! ! |||:!! !||||||! !!.:! PheArgLysLeuPheAspLeuMetValArgArgTrpLysLeuLeuGluAlaLysAs 1225871 : tttcgaaaattattcgatcTCATGGTACGAAGATGGAAACTGTTGGAAGCAAAGGA : 1225817 108 : nGluMetGluIleLeuLysLysTyrThrTyrValAlaTyrValPheThrIleIleL : 126 !|||!!:||||||||||||||||||||| ! !!.! !.!!! ! !:!:! pGluIleGluIleLeuLysLysTyrThrSerLysGlyMetArgLeuArgGluLeuT 1225816 : CGAAATAGAGATACTGAAGAAATACACCAGTAAAGGGATGAGACTTAGAGAACTGT : 1225760 127 : euSer{I} >>>> Target Intron 1 >>>> {le}SerPheIleAlaGly : 133 !!.!{ } 1463 bp { !}|||!!. !! ! yrLys{A}++ ++{sp}SerLeuTrpIleVal 1225759 : ACAAA{G}gt.........................ag{ac}tCGTTGTGGATAGTT : 1224276 134 : IleCysAlaPheAlaLeuPheGluCysThrProIleIleLeuAspValIleAlaPr : 152 :!:! !.!!:! ! !||| !! ! ! ! :!!|||||||||:!!||||| LeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAspValValAlaPr 1224275 : CTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCC : 1224219 153 : oLysGluLysSerLeuProArgArgIleSerIleProIleGluPhe<->PheValA : 170 | !.!.:!!!!!! !|||||||||:!!! !:!!|||:!!...!:! |||:!!| oLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleA 1224218 : GTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAG : 1224162 171 : spGlnGluGluHisPhePheLeuTyrLeuIleSerGluValLeuGlyValPhePhe : 188 ||:!! ! |||||||||!:! ! !.!! ! ! ! !.!!|||.!!! ! spGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSer 1224161 : ACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCC : 1224108 189 : GlyIleTrpSerThrIleAlaThrGlyAlaPheLeuAlaAlaIleGlyGlnHisCy : 207 !! !! !! !||||||..!! ! !!!.! ! !.!!||| ! ||| CysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLe 1224107 : TGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCT : 1224051 208 : sCysGlyThrTyrLysIle : 213 !|||||| !!:! !:!: uCysGlyLeuPheAlaVal 1224050 : TTGCGGATTGTTCGCAGTG : 1224031 vulgar: CbirOr264PI(S) 88 213 . KQ414851.1 1225871 1224030 - 127 M 39 117 S 0 1 5 0 2 I 0 1459 3 0 2 S 1 2 M 39 117 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1225871 127 - . gene_id 1 ; sequence CbirOr264PI(S) ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1225754 1225871 . - . KQ414851.1 exonerate:protein2genome:local exon 1225754 1225871 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1225752 1225753 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1224291 1225753 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1224291 1224292 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1224031 1224290 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224290 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1225871 127 - . alignment_id 1 ; Query CbirOr264PI(S) ; Align 1225872 89 117 ; Align 1224289 129 117 ; Align 1224169 168 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr273CTE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 134 -> 212 Target range: 1243839 -> 1243605 135 : ValPheIleIlePheGluCysIleProValPheLeuAspValPheLeuProLeuAs : 153 :!!|||:!!:!!||| !! |||||| !.!.||||||||| !!! !|||||||| IlePheValLeuPheProLeuIleProProIleLeuAspValValSerProLeuAs 1243839 : ATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAA : 1243785 154 : nGluSerArgLeuArgLysThrGluIleSerPheGluTyrPheLeuAspAspGlnG : 172 ||||!!!|||! !|||! ! |||......:::|||.!.!!!||| :::: nGluThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspMetGluL 1243784 : TGAGACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACAtggaga : 1243728 173 : lnTyrPhePheLeuTyrValIleHisGluPheIleGlyLeuLeuIleGlyLeuSer : 190 :: |||::: :!!:!! ! !!! !!!!!!: !:!!! ! ysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMet 1243727 : agaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATG : 1243674 191 : SerMetSerIleThrGlySerTyrLeuLeuValIleAlaThrHisThrCysAlaVa : 209 !!!:! !! !! !! !:!!! ! !:!!|||||| ! !|||||||||!.!:! ValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGlyLe 1243673 : GTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTT : 1243617 210 : lTyrLysVal : 212 !!:! ||| uPheAlaVal 1243616 : ATTCGCTGTT : 1243606 vulgar: CbirOr273CTE 134 212 . KQ414851.1 1243839 1243605 - 106 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243839 106 - . gene_id 1 ; sequence CbirOr273CTE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243839 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243839 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243839 106 - . alignment_id 1 ; Query CbirOr273CTE ; Align 1243840 135 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr283 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 44 -> 140 Target range: 274515 -> 274803 45 : IleIleValGlnLeuLeuSerPheLeuThrMetGlnPheSerValAsnLeuLeuLeuL : 64 :!!||| !...:!!!!! !.!!:!! !:!:.!. |||:!!:!!||| !|||| ValIleProSerIlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuL 274516 : GTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGA : 274573 65 : ysValLeuSerPheValPheProThrLeuPheMetValIleLysTyrCysThrPheIl : 83 ||:!!|||.!! !:!! !! ! !!!!.!! ! !|||!!.||| !|||.!.:! ysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLe 274574 : AGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTT : 274630 84 : eIleGlnAlaAspAsnValLysGlnLeuValGluGlnIleArgHisAspTrpLysLeu : 102 ::!!!::::! ! .!.:!!::: ! !||||||!!.!!:!:! ||||||!:!:!! uLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIle 274631 : GCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATC : 274687 103 : ValLysSerLysLeuGluIleAspIleIleLysLysTyrAlaGluAsnGlyArgPheV : 122 |||! !!! ! !!!: !.!.:!:!!: !||| !!|||:!!! !||||||!:!| ValThrArgProGluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrV 274688 : GTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACG : 274747 123 : alThrIleIleValIleValCysCysHisCysGlyIleLeuCysTyrIleThrLeu : 140 ||.!!|||.!! ! !.!! ! !!.||||||:!!||||||||| !..!:!! alAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIle 274748 : TCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATA : 274803 vulgar: CbirOr283 44 140 . KQ414889.1 274515 274803 + 123 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274516 274803 123 + . gene_id 1 ; sequence CbirOr283 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274516 274803 . + . KQ414889.1 exonerate:protein2genome:local exon 274516 274803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274516 274803 123 + . alignment_id 1 ; Query CbirOr283 ; Align 274516 45 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr286 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 133 -> 214 Target range: 1644 -> 1887 134 : ThrLeuCysTyrIleThrLeuGlnPheLeuProLeuIleLeuAspValIleLeuProLeuAs : 154 ..!:!! !:!:!::!! !! ! ! !|||! !|||||||||:!!:!!|||||| !|| ValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProLysAs 1645 : GTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAAAA : 1705 155 : nGluSerArgSerLeuLysLeuIleValIleThrGluTyrPheValAsnArgGluLysTyrL : 175 ||||||||||..!:!! !! !||| ! .!! ! ||||||..!:!!..!.!.|||||| nGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrA 1706 : CGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACG : 1768 176 : euTrpLeuMetLeuLeuHisGluIleValAlaIleTyrLeuArgValIleThrIleCysCys : 195 ! !! !!!::!! !||| ! !!.!||| :!! ! !! !..! !! !..! spValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrPheAla 1769 : ACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCT : 1828 196 : ThrThrThrThrIleMetMetTyrIleLeuHisAlaCysAlaLeuPheLysValAla : 214 ! !|||!:! !!!: !:!:! !|||!.!|||!.!|||!!. |||:!! CysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSer 1829 : TGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCC : 1887 vulgar: CbirOr286 133 214 . KQ414921.1 1644 1887 + 100 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1645 1887 100 + . gene_id 1 ; sequence CbirOr286 ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1645 1887 . + . KQ414921.1 exonerate:protein2genome:local exon 1645 1887 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1645 1887 100 + . alignment_id 1 ; Query CbirOr286 ; Align 1645 134 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr272PI Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 81 -> 170 Target range: 32464 -> 32731 82 : PheTyrPheAsnAlaLysGluValLeuPheSerPheSerIlePhePheLeuLeuIleVal : 101 |||:::||| !! !! !!!! ! ! !.!!.!!||||||! !! ! !|||||| PhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIleVal 32465 : ttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATAGTG : 32522 102 : GluLeuIleProValIleLeuAspThrValValProIleAsnGluSerArgGlnArgLys : 121 :!!!!!:!:||| !|||:!!|||..!:!!!.!|||:!!||||||||||||!!.!.! ! GlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHisVal 32523 : CAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTA : 32582 122 : LeuGlnIleAspPheGluPhePheIleAspGluGluLysTyrPheTyrValTyrLeuIle : 141 |||! ! !! ! !|||!:!|||:!!|||::::::||||||||| ! ! !:!: LeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeu 32583 : CTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTG : 32642 142 : HisGluIleThrValValLeuIleGlyValPheThrMetLeuAlaThrGlyThrLeuPro : 161 ||| !:!! !..!||| !:!!|||:!! ..! !|||... :::::: HisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePhe 32643 : CACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttc : 32702 162 : IleAlaPhePheArgHisCysCysAla : 170 ||| |||... !||| !|||||| IlePhePheMetPheHisValCysAla 32703 : atattcttcatGTTCCACGTTTGCGCC : 32731 vulgar: CbirOr272PI 81 170 . KQ415081.1 32464 32731 + 149 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32465 32731 149 + . gene_id 1 ; sequence CbirOr272PI ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32465 32731 . + . KQ415081.1 exonerate:protein2genome:local exon 32465 32731 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32465 32731 149 + . alignment_id 1 ; Query CbirOr272PI ; Align 32465 82 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr273CTE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 118 -> 212 Target range: 32461 -> 32743 119 : HisLeuPheThrLeuIleValLeuIleLeuValIleSerGlyValSerValPheIleIle : 138 ......||| ||||||..! ! !!!!||| !! !|||:!!! ! !!:! !||| ArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIle 32462 : cgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATA : 32519 139 : PheGluCysIleProValPheLeuAspValPheLeuProLeuAsnGluSerArgLeuArg : 158 ! :!!! !:!:||| !.!!:!!||||||.!. !||||||||||||||||||! !!.! ValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHis 32520 : GTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCAT : 32579 159 : LysThrGluIleSerPheGluTyrPheLeuAspAspGlnGlnTyrPhePheLeuTyrVal : 178 ! ! ! !:!! !|||||||||:!!|||...|||:::||||||... ! !!.! ValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAla 32580 : GTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCG : 32639 179 : IleHisGluPheIleGlyLeuLeuIleGlyLeuSerSerMetSerIleThrGlySerTyr : 198 :!:||| !.!! !:!! !:!!||||||!!! ! !!! !... ||| LeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIle 32640 : TTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaatt : 32699 199 : LeuLeuValIleAlaThrHisThrCysAlaValTyrLysVal : 212 ...::: ... ! !|||..!|||||| !!:!!!.:!! PheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32700 : ttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr273CTE 118 212 . KQ415081.1 32461 32743 + 135 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32462 32743 135 + . gene_id 1 ; sequence CbirOr273CTE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32462 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32462 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32462 32743 135 + . alignment_id 1 ; Query CbirOr273CTE ; Align 32462 119 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr264PI(S) Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 111 -> 213 Target range: 32440 -> 32743 112 : LeuLysLysTyrThrTyrValAlaTyrValPheThrIleIleLeuSerIleSerPheIle : 131 ||| !!!..|||||| ::: ::: ||| |||! ! !.!!.!! !!:!||| Leu***SerTyrThrThrLeuArgPhePhePheLeuIleThrThrGlyPheValTyrIle 32441 : CTATAAAGCTATACTACtctccgtttctttttcctaaTTACTACAGGATTCGTATACATT : 32498 132 : AlaGlyIleCysAlaPheAlaLeuPheGluCysThrProIleIleLeuAspValIleAla : 151 ||||||! !:!!!:!|||:!! ! :!!! ! !||| !|||:!!|||||||||||| ---GlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAla 32499 : ---GGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCG : 32555 152 : ProLysGluLysSerLeuProArgArgIleSerIleProIleGluPhePheValAspGln : 171 ||| !.!.:!!|||! !! !!.! !:!: !! ! !! !|||!:!|||||||||||| ProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGln 32556 : CCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcag : 32615 172 : GluGluHisPhePheLeuTyrLeuIleSerGluValLeuGlyValPhePheGlyIleTrp : 191 :::::::::|||... ! ! !:!: ! !:!! ! !||| !.!!|||:!: ! GlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThr 32616 : caaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACG : 32675 192 : SerThrIleAlaThrGlyAlaPheLeuAlaAlaIleGlyGlnHisCysCysGlyThrTyr : 211 !.!!! |||... :::...... ... ! ||| !|||!.!! !!:! ValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPhe 32676 : GTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTC : 32735 212 : LysIle : 213 !!.||| AsnIle 32736 : AATATT : 32743 vulgar: CbirOr264PI(S) 111 213 . KQ415081.1 32440 32743 + 101 M 20 60 G 1 0 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32441 32743 101 + . gene_id 1 ; sequence CbirOr264PI(S) ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32441 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32441 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32441 32743 101 + . alignment_id 1 ; Query CbirOr264PI(S) ; Align 32441 112 60 ; Align 32501 133 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr283 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 119 -> 213 Target range: 32461 -> 32743 120 : ArgPheValThrIleIleValIleValCysCysHisCysGlyIleLeuCysTyrIleThr : 139 |||||| :::|||..!! !! !! ! :!! !||||||!!!! !||| !! ! ArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIle 32462 : cgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATA : 32519 140 : LeuGlnLeuLeuProLeuIleLeuAsnValIleAlaProLeuAsnGluSerArgSerVal : 159 :!!|||!!!||||||! !|||:!!:!!||||||||||||||||||||||||||| ! ! ValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHis 32520 : GTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCAT : 32579 160 : LysLeuIleAlaThrThrGluTyrPheLeuAsnArgGluLysTyrIleTrpIleMetLeu : 179 !||| !.!! !|||||||||:!!:!!::::::||||||... !!!: ! ValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAla 32580 : GTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCG : 32639 180 : LeuHisGluIleValThrAlaTyrLeuArgLeuIleThrLeuCysSerIleSerMetThr : 199 |||||| !:!!! !|||!.! !||| !!|||! ..! ! :!!:::... LeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIle 32640 : TTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaatt : 32699 200 : LeuLeuMetGlnIleLeuHisAlaCysAlaLeuPheAsnIle : 213 ...:::... :::!!!|||!.!|||||| !||||||||| PheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32700 : ttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr283 119 213 . KQ415081.1 32461 32743 + 161 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32462 32743 161 + . gene_id 1 ; sequence CbirOr283 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32462 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32462 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32462 32743 161 + . alignment_id 1 ; Query CbirOr283 ; Align 32462 120 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr283 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 131 -> 213 Target range: 22050 -> 22296 132 : CysGlyIleLeuCysTyrIleThrLeuGlnLeuLeuProLeuIleLeuAsnValIleAla : 151 ||||||||| ! !!:!:!!||| ! !|||||||||:!!:!!:!! ! !||| ! CysGlyIleGlyLeuPheValThrAlaThrLeuLeuProIleValMetCysArgIleGln 22051 : TGTGGCATAGGACTTTTCGTTACAGCGACGCTTCTACCAATCGTAATGTGTAGAATACAG : 22108 152 : ProLeuAsnGluSerArgSerValLysLeuIleAlaThrThrGluTyrPheLeuAsnArg : 171 |||! !|||||||||!.! ! !! :!! ! |||||||||...:::::! ProArgAsnGluSerHisValHisThrIleProPheGlnGlyGluTyrPhePheAspGln 22109 : CCACGTAACGAATCTCACGTACACACTATTCCGTTTCAaggggaatattttttcgaccAA : 22168 172 : GluLysTyrIleTrpIleMetLeuLeuHisGluIleValThrAlaTyrLeuArgLeuIle : 191 |||||| !!!!: !.!!!!::!!|||||| !|||:!!|||!.! :!!! !! ! ! GluLysAsnMetValPheIleIleLeuHisMetIleLeuThrValThrIleThrHisCys 22169 : GAGAAAAATATGGTGTTCATTATACTGCACATGATACTCACAGTTACAATCACACATTGC : 22228 192 : ThrLeuCysSerIleSerMetThrLeuLeuMetGlnIleLeuHisAlaCysAlaLeuPhe : 211 ! ! ! ! !! !..!|||! !||||||:!: !! !:!!|||||||||||||||||| IleAlaValMetThrAspMetIleLeuLeuValLeuThrMetHisAlaCysAlaLeuPhe 22229 : ATTGCTGTAATGACTGATATGATTTTGCTAGTTTTAACCATGCATGCCTGTGCCTTGTTC : 22288 212 : AsnIle : 213 !:!! AlaVal 22289 : GCTGTT : 22296 vulgar: CbirOr283 131 213 . KQ415081.1 22050 22296 + 137 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 22051 22296 137 + . gene_id 2 ; sequence CbirOr283 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 22051 22296 . + . KQ415081.1 exonerate:protein2genome:local exon 22051 22296 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 22051 22296 137 + . alignment_id 2 ; Query CbirOr283 ; Align 22051 132 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr286 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 117 -> 213 Target range: 32455 -> 32743 118 : SerValArgPheIleSerMetCysAlaLeuValPheCysHisCysAspThrLeuCysTyr : 137 !!::::||||||... ::: !.!! !! !||| :!! !! ! !!!!! !||| ThrLeuArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyr 32456 : ACtctccgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTAC : 32513 138 : IleThrLeuGlnPheLeuProLeuIleLeuAspValIleLeuProLeuAsnGluSerArg : 157 !! !:!!||||||||||||! !|||:!!||||||||| !|||||||||||||||||| AlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArg 32514 : GCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGA : 32573 158 : SerLeuLysLeuIleValIleThrGluTyrPheValAsnArgGluLysTyrLeuTrpLeu : 177 !! ! !||| ! ! !||||||||||||:!!::::::||||||... ! HisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuPro 32574 : CACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccA : 32633 178 : MetLeuLeuHisGluIleValAlaIleTyrLeuArgValIleThrIleCysCysThrThr : 197 !!: !|||||| !:!!! !.!!:!! !||| !!:!!! ..! ! ..!... IleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAsp 32634 : ATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgat : 32693 198 : ThrThrIleMetMetTyrIleLeuHisAlaCysAlaLeuPheLysVal : 213 ::: ...:::...::::::!!!|||!.!|||||| !|||!!.:!! SerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32694 : tcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr286 117 213 . KQ415081.1 32455 32743 + 154 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32456 32743 154 + . gene_id 1 ; sequence CbirOr286 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32456 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32456 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32456 32743 154 + . alignment_id 1 ; Query CbirOr286 ; Align 32456 118 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr286 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 332 -> 395 Target range: 26740 -> 27641 333 : AlaThrTyrAsnGlyLeuTrpTyrAlaAlaProLeuArgAlaGlnLysLeuIleLeuPhe : 352 :!!! !||| !!||| !||||||||||||||| !|||||||||||||||:!:|||.!. SerArgTyrTyrGlySerTrpTyrAlaAlaProThrArgAlaGlnLysLeuLeuLeuLeu 26741 : TCCAGGTATTACGGAAGCTGGTACGCGGCGCCAACGCGGGCACAAAAATTGCTGCTGCTG : 26798 353 : ValMetGlnArgAlaIleValLysValAsnLeuThrPheGlyAsnIlePheIleLeuSer : 372 |||:!!|||!:!..!!!:||| !!:!|||:!! !!.!!!.||| !!! ! !||| ValLeuGlnLysCysMetValProCysSerLeuSerAlaAlaLysIleValThrAlaSer 26799 : GTGTTGCAGAAATGCATGGTGCCTTGTAGTTTATCGGCCGCTAAAATTGTCACCGCATCG : 26858 373 : LeuGluGlyPheValThr >>>> Target Intron 1 >>>> LeuAlaSerLysA : 383 |||:!! !!:!!.!||| 712 bp :!!!.!..!! !: LeuGlnIleTyrAlaThr++ ++IleValGlnThrS 26859 : CTGCAAATCTATGCTACGgt.........................agATCGTCCAGACGT : 27603 384 : laValSerTyrPheThrValIleTyrSerThrArgGln : 395 !!||||||||||||:!!|||:!:|||:!! !!:!:!! erValSerTyrPheSerValLeuTyrAlaLeuLysGlu 27604 : CGGTATCTTACTTCTCTGTGCTGTACGCGCTGAAAGAG : 27641 vulgar: CbirOr286 332 395 . KQ415081.1 26740 27641 + 130 M 46 138 5 0 2 I 0 708 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 26741 27641 130 + . gene_id 2 ; sequence CbirOr286 ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 26741 26878 . + . KQ415081.1 exonerate:protein2genome:local exon 26741 26878 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 26879 26880 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 26879 27590 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 27589 27590 . + . intron_id 0 ; splice_site "aG" KQ415081.1 exonerate:protein2genome:local cds 27591 27641 . + . KQ415081.1 exonerate:protein2genome:local exon 27591 27641 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 26741 27641 130 + . alignment_id 2 ; Query CbirOr286 ; Align 26741 333 138 ; Align 27591 379 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr286 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 128 -> 213 Target range: 22041 -> 22296 129 : PheCysHisCysAspThrLeuCysTyrIleThrLeuGlnPheLeuProLeuIleLeuAsp : 148 |||! ! |||! !! ! ! !!:!:!!||| ! !.!!||||||:!!:!!:!! ! PheTyrSerCysGlyIleGlyLeuPheValThrAlaThrLeuLeuProIleValMetCys 22042 : TTCTATTCGTGTGGCATAGGACTTTTCGTTACAGCGACGCTTCTACCAATCGTAATGTGT : 22099 149 : ValIleLeuProLeuAsnGluSerArgSerLeuLysLeuIleValIleThrGluTyrPhe : 168 !|||! !|||! !|||||||||!.! !! !! :!! !! ||||||||| ArgIleGlnProArgAsnGluSerHisValHisThrIleProPheGlnGlyGluTyrPhe 22100 : AGAATACAGCCACGTAACGAATCTCACGTACACACTATTCCGTTTCAaggggaatatttt : 22159 169 : ValAsnArgGluLysTyrLeuTrpLeuMetLeuLeuHisGluIleValAlaIleTyrLeu : 188 :::::!|||||| !!:!! !!!!!!::!!|||||| !|||:!!.!!:!! :!! PheAspGlnGluLysAsnMetValPheIleIleLeuHisMetIleLeuThrValThrIle 22160 : ttcgaccAAGAGAAAAATATGGTGTTCATTATACTGCACATGATACTCACAGTTACAATC : 22219 189 : ArgValIleThrIleCysCysThrThrThrThrIleMetMetTyrIleLeuHisAlaCys : 208 ! ! ! !! ! ! ||| !! !! !:!::!::!:! ! !:!!||||||||| ThrHisCysIleAlaValMetThrAspMetIleLeuLeuValLeuThrMetHisAlaCys 22220 : ACACATTGCATTGCTGTAATGACTGATATGATTTTGCTAGTTTTAACCATGCATGCCTGT : 22279 209 : AlaLeuPheLysVal : 213 ||||||||| ||| AlaLeuPheAlaVal 22280 : GCCTTGTTCGCTGTT : 22296 vulgar: CbirOr286 128 213 . KQ415081.1 22041 22296 + 118 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 22042 22296 118 + . gene_id 3 ; sequence CbirOr286 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 22042 22296 . + . KQ415081.1 exonerate:protein2genome:local exon 22042 22296 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 22042 22296 118 + . alignment_id 3 ; Query CbirOr286 ; Align 22042 129 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr286 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 137 -> 211 Target range: 11274 -> 11496 138 : IleThrLeuGlnPheLeuProLeuIleLeuAspValIleLeuProLeuAsnGluSerArg : 157 :!! !|||!!. ||| !!! !! ! !:!!..!||| ! !!! !||||||!!!||| ValPheLeuHisThrLeuSerGlnThrThrAsnThrIleThrSerArgAsnGluThrArg 11275 : GTCTTCTTGCATACGCTTTCGCAAACTACCAATACGATCACATCTCGAAACGAGACCAGA : 11332 158 : SerLeuLysLeuIleValIleThrGluTyrPheValAsnArgGluLysTyrLeuTrpLeu : 177 :!! ! |||||||||:!!|||||||||||||||:!! !|||:!!|||:!!!::! ! AlaAsnGlyLeuIleValLeuThrGluTyrPheValAspTyrGluGlnTyrIleTyrPro 11333 : GCTAATGGCTTGATAGTTTTAACCGAATACTTCGTTGATTACGAGCAATACATTTATCCA : 11392 178 : MetLeuLeuHisGluIleValAlaIleTyrLeuArgValIleThrIleCysCysThrThr : 197 !!: ! !|||! !:!!|||!.!|||!:!:!! !! !! !! ! ! ! !!!:! ! IleThrThrHisValValValGlyIlePheMetGlyPheAlaIleGlnIleGlySerAsp 11393 : ATTACGACCCACGTGGTTGTAGGAATTTTTATGGGTTTTGCTATTCAAATTGGCAGCGAT : 11452 198 : ThrThrIleMetMetTyrIleLeuHisAlaCysAlaLeuPhe : 211 ! !! !|||!!:!:!!!::!!|||!.! !!!.!:!!||| LeuLeuAsnMetIlePheMetMetHisValSerGlyMetPhe 11453 : CTTTTGAATATGATATTTATGATGCACGTCAGTGGAATGTTC : 11496 vulgar: CbirOr286 137 211 . KQ415081.1 11274 11496 + 101 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 11275 11496 101 + . gene_id 4 ; sequence CbirOr286 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 11275 11496 . + . KQ415081.1 exonerate:protein2genome:local exon 11275 11496 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 11275 11496 101 + . alignment_id 4 ; Query CbirOr286 ; Align 11275 138 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr288PSE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 120 -> 216 Target range: 32461 -> 32749 121 : ArgSerLeuThrLeuPheAlaMetAlaPheCysHisCysAlaMetPheProPheAlaIle : 140 ||| ... |||.!!.!!! !.!||| :!! !!.!!!:||| !!!:!|||||| ArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIle 32462 : cgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATA : 32519 141 : LeuHisPheLeuProLeuMetLeuAspValIleLeuProLeuAsnGluSerArgProLeu : 160 :!!!!.|||||||||! !!!::!!||||||||| !||||||||||||||||||! !! ! ValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHis 32520 : GTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCAT : 32579 161 : GlnPheIleValThrMetGluTyrLeuIleAsnGlnGluGluTyrPheTyrIleIlePhe : 180 !.!. !.!! ||||||!!!:!!:!!|||::::::|||||| !||| ValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAla 32580 : GTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCG : 32639 181 : LeuHisValGlyLeuThrPheValValSerMetIleAlaIleGlyIleThrThrAlaThr : 200 ||||||:!! ! !||| !!..!:!!.!!:!!! !.! ! ! !... ::: LeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIle 32640 : TTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaatt : 32699 201 : IleMetLeuTyrIleLeuHisAlaPheLeuHisValGlyLeuThrGly : 216 ...:::...::::::!!!|||!.!! ! ! ! !!..!:!! !||| PheIlePhePheMetPheHisValCysAlaLysPheAsnIleLeuGly 32700 : ttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATTCTCGGG : 32749 vulgar: CbirOr288PSE 120 216 . KQ415081.1 32461 32749 + 133 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32462 32749 133 + . gene_id 1 ; sequence CbirOr288PSE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32462 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32462 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32462 32749 133 + . alignment_id 1 ; Query CbirOr288PSE ; Align 32462 121 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr279 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 120 -> 213 Target range: 32452 -> 32731 121 : AsnThrValLysLeuPheThrGlnPhePheSerThrPheThrCysIleAlaMetIleVal : 140 !.!|||::::::...||| .!! !!!! !|||..!! !|||!.!!!:.!! ! ThrThrLeuArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSer 32453 : ACTACtctccgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCC : 32510 141 : ThrThrMetIleHisValIleProIleThrLeuAspMetIleLeuProLeuAsnGluSer : 160 !.!!!!::!:!!. !!:!:||| !! !:!!|||:!!||| !||||||||||||||| TyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSer 32511 : TACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCC : 32570 161 : ArgGluGlnGlyThrHisLeuMetValGluTyrPheIleAspProSerLysTyrHisIle : 180 |||.!.!!.! ! !! ! ! ! !|||||||||:!!||| ...|||||| ::: ArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeu 32571 : CGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttccta : 32630 181 : LeuIleValSerHisLeuThrLeuTyrIleCysLeuGlyAlaIleGlyValMetAlaIle : 200 !|||!.!! !|||:!! ! ! !:!! !|||||| !! ! !!.!! !|||::: ProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaVal 32631 : ccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtc : 32690 201 : AlaLeuThrPheLeuSerPheGlyPheHisSerCysAla : 213 |||::: ||| !|||||| !|||||| AspSerIlePheIlePhePheMetPheHisValCysAla 32691 : gattcaattttcatattcttcatGTTCCACGTTTGCGCC : 32731 vulgar: CbirOr279 120 213 . KQ415081.1 32452 32731 + 137 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32453 32731 137 + . gene_id 1 ; sequence CbirOr279 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32453 32731 . + . KQ415081.1 exonerate:protein2genome:local exon 32453 32731 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32453 32731 137 + . alignment_id 1 ; Query CbirOr279 ; Align 32453 121 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr269 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 129 -> 214 Target range: 32491 -> 32746 130 : LeuPheLeuGlyValSerGlyIleThrThrPheGluCysArgSerIleIleLeuAspVal : 149 :!!!:!:!!|||:!!! !..! !.!!! ! ! :!!! !! ! !! !|||:!!|||||| ValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspVal 32492 : GTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTG : 32549 150 : IleIleProMetAsnGluSerArgProArgLysIleGluMetAspLeuGluLeuPheIle : 169 ||| |||:!:||||||||||||! !!.! !:!: ! ! ! !|||! !|||:!! IleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPheVal 32550 : ATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTC : 32609 170 : AsnGluGluGlnTyrPhePheValTyrLeuValGlnGlnValValGlyValAlaLeuGly : 189 :!!:::::::::||||||... ! ! !:!!!!...!:!!! ! !|||.!!|||||| AspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGly 32610 : GACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGT : 32669 190 : IleTrpSerMetIleMetThrGlyThrValIleIleThrValAlaLysHisSerCysAla : 209 :!: ! ! ! ... ::::::...||| ! ||| !|||||| LeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAla 32670 : CTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCC : 32729 210 : ThrTyrLysIleVal : 214 ! !!:!!!.|||:!! LysPheAsnIleLeu 32730 : AAATTCAATATTCTC : 32746 vulgar: CbirOr269 129 214 . KQ415081.1 32491 32746 + 104 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32492 32746 104 + . gene_id 1 ; sequence CbirOr269 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32492 32746 . + . KQ415081.1 exonerate:protein2genome:local exon 32492 32746 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32492 32746 104 + . alignment_id 1 ; Query CbirOr269 ; Align 32492 130 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr286 Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 133 -> 214 Target range: 220 -> 463 134 : ThrLeuCysTyrIleThrLeuGlnPheLeuProLeuIleLeuAspValIleLeuProLeuAsnG : 155 ..!:!! !:!:!::!! !! ! ! !|||! !|||||||||:!!:!!|||||| !|||| ValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProLysAsnG 221 : GTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAAAACG : 284 156 : luSerArgSerLeuLysLeuIleValIleThrGluTyrPheValAsnArgGluLysTyrLeuTr : 176 ||||||||..!:!! !! !||| ! .!! ! ||||||..!:!!..!.!.|||||| ! luSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspVa 285 : AGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGT : 347 177 : pLeuMetLeuLeuHisGluIleValAlaIleTyrLeuArgValIleThrIleCysCysThrThr : 197 !! !!!::!! !||| ! !!.!||| :!! ! !! !..! !! !..! ! ! lTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrPheAlaCysAsp 348 : GTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGAC : 410 198 : ThrThrIleMetMetTyrIleLeuHisAlaCysAlaLeuPheLysValAla : 214 |||!:! !!!: !:!:! !|||!.!|||!.!|||!!. |||:!! ThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSer 411 : ACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCC : 463 vulgar: CbirOr286 133 214 . LHQN01023902.1 220 463 + 100 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 221 463 100 + . gene_id 1 ; sequence CbirOr286 ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 221 463 . + . LHQN01023902.1 exonerate:protein2genome:local exon 221 463 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 221 463 100 + . alignment_id 1 ; Query CbirOr286 ; Align 221 134 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr279 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 150 -> 285 Target range: 5035 -> 5538 151 : LeuAspMetIleLeuProLeuAsnGluSerArgGluGlnGlyThrHisLeuMetValGluTy : 171 ||||||!!::!!:!!||||||||||||!!!|||! !!:! ! ! !! ! !.! ! || LeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTy 5036 : CTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTA : 5096 172 : rPheIleAspProSerLysTyrHisIleLeuIleValSerHisLeuThrLeuTyrIleCysL : 192 ||||:!!||| !..!||||||||| !|||||||||.!!|||:!! !||| :!: : rPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValM 5097 : TTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAA : 5159 193 : euGlyAlaIleGlyValMetAlaIleAlaLeuThrPheLeuSerPheGlyPheHisSerCys : 212 !! ! ! !! ! !! ||| !! ! !!.!!:!:!!! ! !! ! |||:!!||| etLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCys 5160 : TGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGC : 5219 213 : AlaLeuLeuLysLeuThr{As} >>>> Target Intron 1 >>>> {n}TyrHisVa : 222 !.!|||||| :!!.!!{..} 92 bp {.}|||!.! ! GlyLeuLeuAlaIleAla{Gl}++ ++{y}TyrArgPh 5220 : GGATTGTTGGCCATTGCA{GG}gt.........................ag{A}TATCGTTT : 5341 223 : lLysIleMetMetAspGlnThrValLeuGlnThrProSerProArgLysGluGlnVal<->< : 242 !||| ! !!:!!..!:!!! !:!! ! !!.! ! ! !:!!..!:!! eLysTyrAlaCysTyrGluValIleProGluAspGluLysGluAlaValLysMetMetArgL 5342 : TAAATACGCCTGCTATGAGGTAATACCCGAGGATGAGAAGGAAGCTGTGAAGATGATGAGAA : 5404 243 : ->IleTyrGluArgIleValPheAlaIleAlaValHisArgArgAlaLeuGlnPheCysLys : 261 !!:|||..!!.!:!! ! !:!!||| !:!!|||!:!||||||||||||! ysMetTyrArgAsnValCysHisSerIleArgIleHisGlnArgAlaLeuGlnSerValLeu 5405 : AGATGTATAGAAATGTTTGTCATTCGATTCGAATACATCAACGTGCTTTACAGTcggtatta : 5464 262 : GlnPheValLeuSerLeuGluThrTrpPhePheValIleThrIleIleGlyValLeuSerLe : 282 ...:::||| |||:::||| ||| ! !|||.!! !|||:!!! !! LeuLeuLeuLeuLeuLeuGlnThrAlaLysPheHisGlyTrpIlePheLeuValIlePheSe 5465 : ttattattattattattacagactgcaaaatttcacgGTTGGATCTTTTTGGTTATTTTTTC : 5527 283 : uSerIleAsn : 285 !:!!|||||| rAlaIleAsn 5528 : AGCAATTAAT : 5538 vulgar: CbirOr279 150 285 . LHQN01025741.1 5035 5538 + 123 M 68 204 S 0 2 5 0 2 I 0 88 3 0 2 S 1 1 M 22 66 G 0 6 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5036 5538 123 + . gene_id 1 ; sequence CbirOr279 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 5036 5241 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5036 5241 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 5242 5243 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 5242 5333 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 5332 5333 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 5334 5538 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5334 5538 . + . insertions 6 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5036 5538 123 + . alignment_id 1 ; Query CbirOr279 ; Align 5036 151 204 ; Align 5335 220 66 ; Align 5407 242 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr288PSE Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 137 -> 208 Target range: 5005 -> 5218 138 : PheAlaIleLeuHisPheLeuProLeuMetLeuAspValIleLeuProLeuAsnGluSerAr : 158 ||| ! !|||! |||:!! !!! !!!:||||||:!!:!!:!!||||||||||||!!!|| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5006 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5066 159 : gProLeuGlnPheIleValThrMetGluTyrLeuIleAsnGlnGluGluTyrPheTyrIleI : 179 | !!! ! !|||:!! ! !! ! |||!!!:!!:!!:!!!!::!!||| !|||:!:| gAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuI 5067 : AGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGA : 5129 180 : lePheLeuHisValGlyLeuThrPheValValSerMetIleAlaIleGlyIleThrThrAla : 199 || ! !|||:!! !|||..! ! |||:!! !!!: !!.!.!! !! ! ! !||| leValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 5130 : TCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 5189 200 : ThrIleMetLeuTyrIleLeuHisAla : 208 !.! !:!!! ! !:!:! !|||||| AsnTyrValTyrAlaValGlnHisAla 5190 : AATTACGTGTACGCCGTGCAACACGCT : 5218 vulgar: CbirOr288PSE 137 208 . LHQN01025741.1 5005 5218 + 103 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5006 5218 103 + . gene_id 1 ; sequence CbirOr288PSE ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5006 5218 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5006 5218 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5006 5218 103 + . alignment_id 1 ; Query CbirOr288PSE ; Align 5006 138 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr286 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 136 -> 225 Target range: 5005 -> 5272 137 : TyrIleThrLeuGlnPheLeuProLeuIleLeuAspValIleLeuProLeuAsnGluSerAr : 157 !:!!!: !|||! !|||:!! !!! !|||||||||:!!:!!:!!||||||||||||!!!|| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5006 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5066 158 : gSerLeuLysLeuIleValIleThrGluTyrPheValAsnArgGluLysTyrLeuTrpLeuM : 178 |:!!! ! !!!!:!! ! !.!! ! |||||||||:!!..!!!:||||||! !!::|||! gAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuI 5067 : AGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGA : 5129 179 : etLeuLeuHisGluIleValAlaIleTyrLeuArgValIleThrIleCysCysThrThrThr : 198 !::!! !||| ! !:!!!.!:!: :!!! !:!! !..!.!!|||..! ! !.!! leValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 5130 : TCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 5189 199 : ThrIleMetMetTyrIleLeuHisAlaCysAlaLeuPheLysValAlaSerTyrArgMetGl : 219 !.! !:!! !:!:! !|||||||||!.!|||!!. :!!|||.!!!! !:!::! AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***LeuValGl 5190 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCA : 5252 220 : uAsnAlaIleGlnGluAsp : 225 !... !:!!..!|||:!! nGlyGlnLeuMetGluAsn 5253 : AGGACAATTAATGGAAAAT : 5272 vulgar: CbirOr286 136 225 . LHQN01025741.1 5005 5272 + 134 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5006 5272 134 + . gene_id 1 ; sequence CbirOr286 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5006 5272 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5006 5272 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5006 5272 134 + . alignment_id 1 ; Query CbirOr286 ; Align 5006 137 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr272PI Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 80 -> 180 Target range: 4954 -> 5254 81 : SerPheTyrPheAsnAlaLysGluValLeuPheSerPheSerIlePhePheLeuLeuIleVa : 101 ||||||||||||!.. !:!! !|||! !.!.|||!!.!!! ! !.!.!!!:!! !:! SerPheTyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLe 4955 : TCATTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTT : 5015 102 : lGluLeuIleProValIleLeuAspThrValValProIleAsnGluSerArgGlnArgLysL : 122 ! !!!!:!: !! !|||||||||! !:!!:!!|||:!:||||||!!!||| !||| !! uProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuP 5016 : GCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGT : 5078 123 : euGlnIleAspPheGluPhePheIleAspGluGluLysTyrPheTyrValTyrLeuIleHis : 142 !! ! ! ! !:!|||:!!||||||!!:|||||| !|||:!! !:!! ||| heValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHis 5079 : TCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCAT : 5138 143 : GluIleThrValValLeuIleGlyValPheThrMetLeuAlaThrGlyThrLeuProIleAl : 163 ! ! !||||||:!!!!: !:!!! !..!.!.! !||| !! !.!! ! !:!: MetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTy 5139 : ATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTA : 5201 164 : aPhePheArgHisCysCysAlaIleCysLysIleSerSerAsnLeuIleGlu : 180 ! ! ! !:!|||..!|||!.!:!:! |||:!!.!! ! |||:!!:!! rAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***LeuValGln 5202 : CGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAA : 5254 vulgar: CbirOr272PI 80 180 . LHQN01025741.1 4954 5254 + 130 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4955 5254 130 + . gene_id 1 ; sequence CbirOr272PI ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4955 5254 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4955 5254 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4955 5254 130 + . alignment_id 1 ; Query CbirOr272PI ; Align 4955 81 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr283 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 136 -> 225 Target range: 5005 -> 5272 137 : TyrIleThrLeuGlnLeuLeuProLeuIleLeuAsnValIleAlaProLeuAsnGluSerAr : 157 !:!!!: !|||! !!!!:!! !!! !||||||:!!:!!:!! !||||||||||||!!!|| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5006 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5066 158 : gSerValLysLeuIleAlaThrThrGluTyrPheLeuAsnArgGluLysTyrIleTrpIleM : 178 |:!! ! !!!!:!! ! !!.!! ! ||||||:!!:!!..!!!:|||||| !!:::!:! gAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuI 5067 : AGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGA : 5129 179 : etLeuLeuHisGluIleValThrAlaTyrLeuArgLeuIleThrLeuCysSerIleSerMet : 198 !::!! !||| ! !:!!..!!.! :!!! !:!! !..!!!!|||:!! !..! leValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 5130 : TCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 5189 199 : ThrLeuLeuMetGlnIleLeuHisAlaCysAlaLeuPheAsnIleAlaSerTyrLeuMetGl : 219 !.!! !:!! :!:! !|||||||||!.!|||!!. !||||||.!!!! |||:!::! AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***LeuValGl 5190 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCA : 5252 220 : uAsnAlaIleProGluAsn : 225 !... !:!! !|||||| nGlyGlnLeuMetGluAsn 5253 : AGGACAATTAATGGAAAAT : 5272 vulgar: CbirOr283 136 225 . LHQN01025741.1 5005 5272 + 122 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5006 5272 122 + . gene_id 1 ; sequence CbirOr283 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5006 5272 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5006 5272 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5006 5272 122 + . alignment_id 1 ; Query CbirOr283 ; Align 5006 137 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr283 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 134 -> 214 Target range: 1588 -> 1828 135 : LeuCysTyrIleThrLeuGlnLeuLeuProLeuIleLeuAsnValIleAlaProLeuAsnGl : 155 :!! !:!! !:!!:!! !:!! !|||! !:!!|||:!!:!!|||:!!||| !||||| ValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGl 1589 : GTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGA : 1649 156 : uSerArgSerValLysLeuIleAlaThrThrGluTyrPheLeuAsnArgGluLysTyrIleT : 176 |||||||.!!||| ! !!!||| ! !!.!! ! ||| !|||:!!..!|||:!!:!! !! uSerArgGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrT 1650 : ATCGCGTGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAGGAACATTATT : 1712 177 : rpIleMetLeuLeuHisGluIleValThrAlaTyrLeuArgLeuIleThrLeuCysSerIle : 196 ::|||:!!:!! !||| !:!! !..! ! !:!! !!!!.!!..!! ! !||| ! yrIleLeuMetGlyHisMetLeuCysValIleThrValValPhePheValTyrIleSerCys 1713 : ACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTCTACATCTCCTGT : 1772 197 : SerMetThrLeuLeuMetGlnIleLeuHisAlaCysAlaLeuPheAsnIleAla : 214 ..!! !! !! !:!!! :!:! !|||||||||!.!|||.!.|||:!!:!! AspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnValSer 1773 : GACACGATCTACATGAATATCGTGCAACACGCGTGCGGATTACTGAACGTCTCT : 1828 vulgar: CbirOr283 134 214 . LHQN01025741.1 1588 1828 + 105 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1589 1828 105 + . gene_id 2 ; sequence CbirOr283 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1589 1828 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1589 1828 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1589 1828 105 + . alignment_id 2 ; Query CbirOr283 ; Align 1589 135 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr273CTE Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 132 -> 224 Target range: 4996 -> 5272 133 : ValSerValPheIleIlePheGluCysIleProValPheLeuAspValPheLeuProLeuAs : 153 !.!:!!:!!|||!!: !!!. !! !:!: !! !.!!||||||:!!.!!:!!|||||||| AlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAs 4997 : GCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAA : 5057 154 : nGluSerArgLeuArgLysThrGluIleSerPheGluTyrPheLeuAspAspGlnGlnTyrP : 174 ||||!!!||| !||| ! !! ! !! ! ! ||||||:!!|||!!:.!.:!!||| nGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrH 5058 : CGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATC : 5120 175 : hePheLeuTyrValIleHisGluPheIleGlyLeuLeuIleGlyLeuSerSerMetSerIle : 194 !!:!||| !||| ||| !!:!:!!! !:!!:!!!!: !:!!||| !.!.!!! ! isTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 5121 : ATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 5180 195 : ThrGlySerTyrLeuLeuValIleAlaThrHisThrCysAlaValTyrLysValAlaSerAs : 215 !! !:!! !!! !:!! ! !!.! !|||.!!|||!.!:!!! :!!|||.!! ! CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly** 5181 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTA : 5243 216 : nLeuMetGlnGlyThrValThrGluHis : 224 |||:!:|||||| !:!!! !|||:!! *LeuValGlnGlyGlnLeuMetGluAsn 5244 : ATTAGTTCAAGGACAATTAATGGAAAAT : 5272 vulgar: CbirOr273CTE 132 224 . LHQN01025741.1 4996 5272 + 118 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4997 5272 118 + . gene_id 1 ; sequence CbirOr273CTE ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4997 5272 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4997 5272 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4997 5272 118 + . alignment_id 1 ; Query CbirOr273CTE ; Align 4997 133 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr286 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 136 -> 225 Target range: 5657 -> 5390 137 : TyrIleThrLeuGlnPheLeuProLeuIleLeuAspValIleLeuProLeuAsnGluSerAr : 157 !:!!!: !|||! !|||:!! !!! !|||||||||:!!:!!:!!||||||||||||!!!|| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5657 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5597 158 : gSerLeuLysLeuIleValIleThrGluTyrPheValAsnArgGluLysTyrLeuTrpLeuM : 178 |:!!! ! !!!!:!! ! !.!! ! |||||||||:!!..!!!:||||||! !!::|||! gAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuI 5596 : AGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGA : 5534 179 : etLeuLeuHisGluIleValAlaIleTyrLeuArgValIleThrIleCysCysThrThrThr : 198 !::!! !||| ! !:!!!.!:!: :!!! !:!! !..!.!!|||..! ! !.!! leValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 5533 : TCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 5474 199 : ThrIleMetMetTyrIleLeuHisAlaCysAlaLeuPheLysValAlaSerTyrArgMetGl : 219 !.! !:!! !:!:! !|||||||||!.!|||!!. :!!|||.!!!! !:!::! AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***LeuValGl 5473 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCA : 5411 220 : uAsnAlaIleGlnGluAsp : 225 !... !:!!..!|||:!! nGlyGlnLeuMetGluAsn 5410 : AGGACAATTAATGGAAAAT : 5391 vulgar: CbirOr286 136 225 . LHQN01028732.1 5657 5390 - 135 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5391 5657 135 - . gene_id 1 ; sequence CbirOr286 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5391 5657 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5391 5657 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5391 5657 135 - . alignment_id 1 ; Query CbirOr286 ; Align 5658 137 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr288PSE Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 137 -> 208 Target range: 5657 -> 5444 138 : PheAlaIleLeuHisPheLeuProLeuMetLeuAspValIleLeuProLeuAsnGluSerAr : 158 ||| ! !|||! |||:!! !!! !!!:||||||:!!:!!:!!||||||||||||!!!|| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5657 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5597 159 : gProLeuGlnPheIleValThrMetGluTyrLeuIleAsnGlnGluGluTyrPheTyrIleI : 179 | !!! ! !|||:!! ! !! ! |||!!!:!!:!!:!!!!::!!||| !|||:!:| gAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuI 5596 : AGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGA : 5534 180 : lePheLeuHisValGlyLeuThrPheValValSerMetIleAlaIleGlyIleThrThrAla : 199 || ! !|||:!! !|||..! ! |||:!! !!!: !!.!.!! !! ! ! !||| leValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 5533 : TCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 5474 200 : ThrIleMetLeuTyrIleLeuHisAla : 208 !.! !:!!! ! !:!:! !|||||| AsnTyrValTyrAlaValGlnHisAla 5473 : AATTACGTGTACGCCGTGCAACACGCT : 5445 vulgar: CbirOr288PSE 137 208 . LHQN01028732.1 5657 5444 - 101 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5445 5657 101 - . gene_id 1 ; sequence CbirOr288PSE ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5445 5657 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5445 5657 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5445 5657 101 - . alignment_id 1 ; Query CbirOr288PSE ; Align 5658 138 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr273CTE Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 132 -> 224 Target range: 5666 -> 5390 133 : ValSerValPheIleIlePheGluCysIleProValPheLeuAspValPheLeuProLeuAs : 153 !.!:!!:!!|||!!: !!!. !! !:!: !! !.!!||||||:!!.!!:!!|||||||| AlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAs 5666 : GCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAA : 5606 154 : nGluSerArgLeuArgLysThrGluIleSerPheGluTyrPheLeuAspAspGlnGlnTyrP : 174 ||||!!!||| !||| ! !! ! !! ! ! ||||||:!!|||!!:.!.:!!||| nGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrA 5605 : CGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATC : 5543 175 : hePheLeuTyrValIleHisGluPheIleGlyLeuLeuIleGlyLeuSerSerMetSerIle : 194 !!:!||| !||| ||| !!:!:!!! !:!!:!!!!: !:!!||| !.!.!!! ! rgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 5542 : GTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 5483 195 : ThrGlySerTyrLeuLeuValIleAlaThrHisThrCysAlaValTyrLysValAlaSerAs : 215 !! !:!! !!! !:!! ! !!.! !|||.!!|||!.!:!!! :!!|||.!! ! CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly** 5482 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTA : 5420 216 : nLeuMetGlnGlyThrValThrGluHis : 224 |||:!:|||||| !:!!! !|||:!! *LeuValGlnGlyGlnLeuMetGluAsn 5419 : ATTAGTTCAAGGACAATTAATGGAAAAT : 5391 vulgar: CbirOr273CTE 132 224 . LHQN01028732.1 5666 5390 - 116 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5391 5666 116 - . gene_id 1 ; sequence CbirOr273CTE ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5391 5666 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5391 5666 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5391 5666 116 - . alignment_id 1 ; Query CbirOr273CTE ; Align 5667 133 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr272PI Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 80 -> 180 Target range: 5708 -> 5408 81 : SerPheTyrPheAsnAlaLysGluValLeuPheSerPheSerIlePhePheLeuLeuIleVa : 101 ||||||! !|||!.. !:!!:!!|||! !.!.|||!!.!!! ! !.!.!!!:!! !:! SerPheCysPheThrPheGluLysValHisIleSerLeuCysAlaAlaLeuPheMetCysLe 5708 : TCATTCTGTTTCACGTTTGAAAAAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTT : 5648 102 : lGluLeuIleProValIleLeuAspThrValValProIleAsnGluSerArgGlnArgLysL : 122 ! !!!!:!: !! !|||||||||! !:!!:!!|||:!:||||||!!!||| !||| !! uProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuP 5647 : GCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGT : 5585 123 : euGlnIleAspPheGluPhePheIleAspGluGluLysTyrPheTyrValTyrLeuIleHis : 142 !! ! ! ! !:!|||:!!||||||!!:|||||| !|||:!! !:!! ||| heValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuIleValGlyHis 5584 : TCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCAT : 5525 143 : GluIleThrValValLeuIleGlyValPheThrMetLeuAlaThrGlyThrLeuProIleAl : 163 ! ! !||||||:!!!!: !:!!! !..!.!.! !||| !! !.!! ! !:!: MetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTy 5524 : ATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTA : 5462 164 : aPhePheArgHisCysCysAlaIleCysLysIleSerSerAsnLeuIleGlu : 180 ! ! ! !:!|||..!|||!.!:!:! |||:!!.!! ! |||:!!:!! rAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***LeuValGln 5461 : CGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAA : 5409 vulgar: CbirOr272PI 80 180 . LHQN01028732.1 5708 5408 - 121 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5409 5708 121 - . gene_id 1 ; sequence CbirOr272PI ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5409 5708 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5409 5708 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5409 5708 121 - . alignment_id 1 ; Query CbirOr272PI ; Align 5709 81 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr279 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 150 -> 285 Target range: 5627 -> 5124 151 : LeuAspMetIleLeuProLeuAsnGluSerArgGluGlnGlyThrHisLeuMetValGluTy : 171 ||||||!!::!!:!!||||||||||||!!!|||! !!:! ! ! !! ! !.! ! || LeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTy 5627 : CTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTA : 5567 172 : rPheIleAspProSerLysTyrHisIleLeuIleValSerHisLeuThrLeuTyrIleCysL : 192 ||||:!!||| !..!||||||!.! !|||||||||.!!|||:!! !||| :!: : rPheValAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValM 5566 : TTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAA : 5504 193 : euGlyAlaIleGlyValMetAlaIleAlaLeuThrPheLeuSerPheGlyPheHisSerCys : 212 !! ! ! !! ! !! ||| !! ! !!.!!:!:!!! ! !! ! |||:!!||| etLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCys 5503 : TGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGC : 5444 213 : AlaLeuLeuLysLeuThr{As} >>>> Target Intron 1 >>>> {n}TyrHisVa : 222 !.!|||||| :!!.!!{..} 92 bp {.}|||!.! ! GlyLeuLeuAlaIleAla{Gl}++ ++{y}TyrArgPh 5443 : GGATTGTTGGCCATTGCA{GG}gt.........................ag{A}TATCGTTT : 5322 223 : lLysIleMetMetAspGlnThrValLeuGlnThrProSerProArgLysGluGlnVal<->< : 242 !||| ! ! !!:!!..!:!!! !:!! ! !!.! ! ! !:!!..!:!! eLysTyrAlaCysTyrGluValIleProGluAspGluLysGluAlaValLysMetMetLysL 5321 : TAAATACGCGTGCTATGAGGTAATACCCGAGGATGAGAAGGAAGCTGTGAAGATGATGAAAA : 5259 243 : ->IleTyrGluArgIleValPheAlaIleAlaValHisArgArgAlaLeuGlnPheCysLys : 261 !!:|||..!!.!:!! ! !:!!||| !:!!|||!:!||||||||||||! ysMetTyrArgAsnValCysHisSerIleArgIleHisGlnArgAlaLeuGlnSerValLeu 5258 : AGATGTATAGAAATGTTTGTCATTCGATTCGAATACATCAACGTGCTTTACAGTcggtatta : 5199 262 : GlnPheValLeuSerLeuGluThrTrpPhePheValIleThrIleIleGlyValLeuSerLe : 282 ...:::||| |||:::||| ||| ! !|||.!! !|||:!!! !! LeuLeuLeuLeuLeuLeuGlnThrAlaLysPheHisGlyTrpIlePheLeuValIlePheSe 5198 : ttattattattattattacagactgcaaaatttcacgGTTGGATCTTTTTGGTTATTTTTTC : 5136 283 : uSerIleAsn : 285 !:!!|||||| rAlaIleAsn 5135 : AGCAATTAAT : 5125 vulgar: CbirOr279 150 285 . LHQN01028732.1 5627 5124 - 118 M 68 204 S 0 2 5 0 2 I 0 88 3 0 2 S 1 1 M 22 66 G 0 6 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5125 5627 118 - . gene_id 1 ; sequence CbirOr279 ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 5422 5627 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5422 5627 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 5420 5421 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 5330 5421 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 5330 5331 . - . intron_id 0 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 5125 5329 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5125 5329 . - . insertions 6 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5125 5627 118 - . alignment_id 1 ; Query CbirOr279 ; Align 5628 151 204 ; Align 5329 220 66 ; Align 5257 242 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr283 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 136 -> 225 Target range: 5657 -> 5390 137 : TyrIleThrLeuGlnLeuLeuProLeuIleLeuAsnValIleAlaProLeuAsnGluSerAr : 157 !:!!!: !|||! !!!!:!! !!! !||||||:!!:!!:!! !||||||||||||!!!|| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5657 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5597 158 : gSerValLysLeuIleAlaThrThrGluTyrPheLeuAsnArgGluLysTyrIleTrpIleM : 178 |:!! ! !!!!:!! ! !!.!! ! ||||||:!!:!!..!!!:|||||| !!:::!:! gAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuI 5596 : AGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGA : 5534 179 : etLeuLeuHisGluIleValThrAlaTyrLeuArgLeuIleThrLeuCysSerIleSerMet : 198 !::!! !||| ! !:!!..!!.! :!!! !:!! !..!!!!|||:!! !..! leValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 5533 : TCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 5474 199 : ThrLeuLeuMetGlnIleLeuHisAlaCysAlaLeuPheAsnIleAlaSerTyrLeuMetGl : 219 !.!! !:!! :!:! !|||||||||!.!|||!!. !||||||.!!!! |||:!::! AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***LeuValGl 5473 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCA : 5411 220 : uAsnAlaIleProGluAsn : 225 !... !:!! !|||||| nGlyGlnLeuMetGluAsn 5410 : AGGACAATTAATGGAAAAT : 5391 vulgar: CbirOr283 136 225 . LHQN01028732.1 5657 5390 - 122 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5391 5657 122 - . gene_id 1 ; sequence CbirOr283 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5391 5657 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5391 5657 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5391 5657 122 - . alignment_id 1 ; Query CbirOr283 ; Align 5658 137 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr312 Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 159 -> 213 Target range: 357476 -> 357638 160 : GlnLeuLeuPheProGlyGluTyrPheValAspGlnGluLysTyrPheTyrAlaIleT : 179 .!.|||! !||| !! !!!:||||||||||||...|||||||||||||||..!! ! AsnLeuTyrPheThrIleAspTyrPheValAspAspGluLysTyrPheTyrValLysP 357477 : AATCTATACTTCACCATAGACTACTTCGTCGACgacgaaaaatacttttacgTCAAGT : 357534 180 : rpLeuHisLeuAspIleThrLeuSerLeuValValThrThrLeuIleGlyThrGluSe : 198 ::||||||:!! !!:!! !!!!||||||! ! !|||..!:!!:!!|||:!!||| heLeuHisValTyrLeuTyrPheSerLeuGlySerThrValIleLeuGlySerGluVa 357535 : TCTTACATGTGTATCTATATTTTTCCCTCGGAAGTACAGTCATTCTAGGATCAGAAGT : 357591 199 : rLeuTyrIleIleTyrIleGlnHisValCysGlyMetPheGlnVal : 213 ! ! !|||!!:!:! !.!. !!.!! !|||:!:!:!|||||| lThrThrIleMetPheAlaAsnPheAlaSerGlyLeuTyrGlnVal 357592 : AACAACTATTATGTTCGCTAATTTTGCGTCTGGGTTATATCAGGTA : 357638 vulgar: CbirOr312 159 213 . KQ414693.1 357476 357638 + 111 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 357477 357638 111 + . gene_id 1 ; sequence CbirOr312 ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 357477 357638 . + . KQ414693.1 exonerate:protein2genome:local exon 357477 357638 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 357477 357638 111 + . alignment_id 1 ; Query CbirOr312 ; Align 357477 160 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr306 Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 201 -> 257 Target range: 357778 -> 357946 202 : TyrValLeuHisAsnCysAlaIlePheLysIleAlaSerTyrArgIleGluHisIleP : 221 ::: !||| ||| !! !.!!..!.!! !||||||||| !..! !:!!| PheTyrLeuMetAsnLeuIleThrIleSerPheHisSerTyrArgAlaArgSerValP 357779 : ttctaCCTCATGAATCTAATTACTATCTCATTTCACAGTTATCGCGCAAGGTCTGTAT : 357836 222 : heAspGluLysIleLeuGlnMetSerLysThrIleGlyGlnTyrValLeuTyrGluAr : 240 ||..!:!!|||:!:|||.!. |||!..||| ! !!.!. !|||:!!:!!|||!: heSerLysLysValLeuAsnAlaSerSerThrSerArgAspSerValValHisGluLy 357837 : TTAGTAAGAAAGTGTTGAATGCCTCAAGCACGTCAAGAGATAGTGTAGTGCACGAAAA : 357893 241 : gLeuIleHisAlaValHisLeuHisArgArgAlaValAspLeuThrAsnAsp : 257 !|||:!!.!.!.!||| ! :!!|||||||||||||||!!:|||..!::::!! sLeuValGluValValLysMetHisArgArgAlaValGluLeuValSerAsn 357894 : ATTGGTTGAAGTTGTGAAAATGCACAGACGAGCGGTGGAGTTAGTATCAAAT : 357946 vulgar: CbirOr306 201 257 . KQ414693.1 357778 357946 + 103 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 357779 357946 103 + . gene_id 1 ; sequence CbirOr306 ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 357779 357946 . + . KQ414693.1 exonerate:protein2genome:local exon 357779 357946 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 357779 357946 103 + . alignment_id 1 ; Query CbirOr306 ; Align 357779 202 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr311PI Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 122 -> 219 Target range: 357479 -> 357943 123 : LeuProIleIleValGluTyrPheValAspGlnGluArgTyrPhePheAlaIleLeuI : 142 ||| !.!!! !:!!!!:||||||||||||...|||:::||||||:::..!! !!!: LeuTyrPheThrIleAspTyrPheValAspAspGluLysTyrPheTyrValLysPheL 357480 : CTATACTTCACCATAGACTACTTCGTCGACgacgaaaaatacttttacgTCAAGTTCT : 357537 143 : leHisThrPheMetPheValTyrValGlyCysIleThrIleAlaAlaIleAlaThrMe : 161 !!|||..!!:!:!:!:! !!! !:!!||| !!! !..!||| !!.! !! !..!! euHisValTyrLeuTyrPheSerLeuGlySerThrValIleLeuGlySerGluValTh 357538 : TACATGTGTATCTATATTTTTCCCTCGGAAGTACAGTCATTCTAGGATCAGAAGTAAC : 357594 162 : tLeuIleAlaTyrValLeuHisAsnCysAlaIlePheGluValAla{Se} >>>> T : 177 !||| !!:!!.! ! ! ! !!.!:!!!:!:!!|||!.!{!!} rThrIleMetPheAlaAsnPheAlaSerGlyLeuTyrGlnValVal{Cy}++ 357595 : AACTATTATGTTCGCTAATTTTGCGTCTGGGTTATATCAGGTAGTG{TG}gt...... : 357646 178 : arget Intron 1 >>>> {r}TyrArgIleGluHisIlePheAspLysThrIleL : 189 173 bp {!}|||||| !..! !:!!|||..!|||! !:!:| ++{s}TyrArgAlaArgSerValPheSerLysLysValL 357647 : ...................ag{T}TATCGCGCAAGGTCTGTATTTAGTAAGAAAGTGT : 357851 190 : euGlnMetSerLysAspIleArgGlnHisIleLeuTyrGluArgLeuIleHisAlaVa : 208 ||.!. |||!.. !|||.!. !:!!:!!:!!|||!:!|||:!!.!.!.!|| euAsnAlaSerSerThrSerArgAspSerValValHisGluLysLeuValGluValVa 357852 : TGAATGCCTCAAGCACGTCAAGAGATAGTGTAGTGCACGAAAAATTGGTTGAAGTTGT : 357908 209 : lTyrLeuHisArgArgAlaValAspLeuAlaAsn : 219 | ! :!!|||||||||||||||!!:|||!.!::: lLysMetHisArgArgAlaValGluLeuValSer 357909 : GAAAATGCACAGACGAGCGGTGGAGTTAGTATCA : 357943 vulgar: CbirOr311PI 122 219 . KQ414693.1 357479 357943 + 157 M 54 162 S 0 2 5 0 2 I 0 169 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 357480 357943 157 + . gene_id 1 ; sequence CbirOr311PI ; gene_orientation + KQ414693.1 exonerate:protein2genome:local cds 357480 357643 . + . KQ414693.1 exonerate:protein2genome:local exon 357480 357643 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local splice5 357644 357645 . + . intron_id 1 ; splice_site "GT" KQ414693.1 exonerate:protein2genome:local intron 357644 357816 . + . intron_id 1 KQ414693.1 exonerate:protein2genome:local splice3 357815 357816 . + . intron_id 0 ; splice_site "AG" KQ414693.1 exonerate:protein2genome:local cds 357817 357943 . + . KQ414693.1 exonerate:protein2genome:local exon 357817 357943 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 357480 357943 157 + . alignment_id 1 ; Query CbirOr311PI ; Align 357480 123 162 ; Align 357818 178 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr308 Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 160 -> 257 Target range: 357479 -> 357943 161 : LeuProIleIleValGluTyrPheValAspGlnGluArgTyrPhePheAlaIleLeuT : 180 ||| !.!!! !:!!!!:||||||||||||...|||:::||||||:::..!! !!! LeuTyrPheThrIleAspTyrPheValAspAspGluLysTyrPheTyrValLysPheL 357480 : CTATACTTCACCATAGACTACTTCGTCGACgacgaaaaatacttttacgTCAAGTTCT : 357537 181 : hrHisIlePheMetThrThrPheAlaGlyCysIleThrLeuAlaGlyIleAlaThrMe : 199 !|||:!:!:!:!: ! !! ! !||| !!! !..!:!! !||| !! !..!! euHisValTyrLeuTyrPheSerLeuGlySerThrValIleLeuGlySerGluValTh 357538 : TACATGTGTATCTATATTTTTCCCTCGGAAGTACAGTCATTCTAGGATCAGAAGTAAC : 357594 200 : tHisIleAlaTyrAlaLeuHisAsnCysAlaIlePheGluIleVal{Se} >>>> T : 215 !||| !!:!||| ! ! ! !!.!:!!!:!:!!:!!|||{!!} rThrIleMetPheAlaAsnPheAlaSerGlyLeuTyrGlnValVal{Cy}++ 357595 : AACTATTATGTTCGCTAATTTTGCGTCTGGGTTATATCAGGTAGTG{TG}gt...... : 357646 216 : arget Intron 1 >>>> {r}TyrArgMetGluHisIlePheGluGluAsnIleL : 227 173 bp {!}|||||| ..! !:!!|||...:!!!!.:!:| ++{s}TyrArgAlaArgSerValPheSerLysLysValL 357647 : ...................ag{T}TATCGCGCAAGGTCTGTATTTAGTAAGAAAGTGT : 357851 228 : euGlnMetSerLysAspIleArgGluHisIleLeuHisGluArgLeuIleHisValVa : 246 ||.!. |||!.. !|||!!: !:!!:!!||||||!:!|||:!!.!.||||| euAsnAlaSerSerThrSerArgAspSerValValHisGluLysLeuValGluValVa 357852 : TGAATGCCTCAAGCACGTCAAGAGATAGTGTAGTGCACGAAAAATTGGTTGAAGTTGT : 357908 247 : lTyrLeuHisArgArgAlaIleAspLeuThrAsn : 257 | ! :!!||||||||||||:!:!!:|||..!::: lLysMetHisArgArgAlaValGluLeuValSer 357909 : GAAAATGCACAGACGAGCGGTGGAGTTAGTATCA : 357943 vulgar: CbirOr308 160 257 . KQ414693.1 357479 357943 + 167 M 54 162 S 0 2 5 0 2 I 0 169 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 357480 357943 167 + . gene_id 1 ; sequence CbirOr308 ; gene_orientation + KQ414693.1 exonerate:protein2genome:local cds 357480 357643 . + . KQ414693.1 exonerate:protein2genome:local exon 357480 357643 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local splice5 357644 357645 . + . intron_id 1 ; splice_site "GT" KQ414693.1 exonerate:protein2genome:local intron 357644 357816 . + . intron_id 1 KQ414693.1 exonerate:protein2genome:local splice3 357815 357816 . + . intron_id 0 ; splice_site "AG" KQ414693.1 exonerate:protein2genome:local cds 357817 357943 . + . KQ414693.1 exonerate:protein2genome:local exon 357817 357943 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 357480 357943 167 + . alignment_id 1 ; Query CbirOr308 ; Align 357480 161 162 ; Align 357818 216 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr301 Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 158 -> 251 Target range: 357476 -> 357934 159 : ArgPheTyrValArgLeuGluPhePheIleAsnGluGluLysTyrPheTyrValIleA : 178 !.!.!.||| !!! !:!!!!:!:!|||:!!:!!:::||||||||||||||||||! AsnLeuTyrPheThrIleAspTyrPheValAspAspGluLysTyrPheTyrValLysP 357477 : AATCTATACTTCACCATAGACTACTTCGTCGACgacgaaaaatacttttacgTCAAGT : 357534 179 : laPheTyrThrIleLeuSerLeuThrValGlyAlaAlaThrValValSerThrGlyAl : 197 !!!.:!!..! !|||! !!!!:!!:!!|||::!.!!..!:!!:!!.!!:!!! !!. heLeuHisValTyrLeuTyrPheSerLeuGlySerThrValIleLeuGlySerGluVa 357535 : TCTTACATGTGTATCTATATTTTTCCCTCGGAAGTACAGTCATTCTAGGATCAGAAGT : 357591 198 : aSerLeuLeuThrPheGlyHisHisSerCysAlaMetPheLysIleAla{Cy} >>> : 214 !!!! !:!!! !|||!.!:!! !:!!! !!.!:!:!:!:!!:!!!.!{||} lThrThrIleMetPheAlaAsnPheAlaSerGlyLeuTyrGlnValVal{Cy}++ 357592 : AACAACTATTATGTTCGCTAATTTTGCGTCTGGGTTATATCAGGTAGTG{TG}gt... : 357646 215 : > Target Intron 1 >>>> {s}HisArgMetGluHisAlaMetAspLysTyrL : 225 173 bp {|}:!!||| ..! !!.!.!...!||| ! ++{s}TyrArgAlaArgSerValPheSerLysLysV 357647 : ......................ag{T}TATCGCGCAAGGTCTGTATTTAGTAAGAAAG : 357848 226 : ysLeuLeuTyrIleAlaLysArgLysAsp<-><->IleGlnAsnGluIleValAsnAl : 242 !||| ! ! !::!! ! !!:!||| :!:!!..!.:!!:!:|||.!.!. alLeuAsnAlaSerSerThrSerArgAspSerValValHisGluLysLeuValGluVa 357849 : TGTTGAATGCCTCAAGCACGTCAAGAGATAGTGTAGTGCACGAAAAATTGGTTGAAGT : 357905 243 : aValAspIleHisArgLysAlaValGlu : 251 !||| ! !!:||||||::!||||||||| lValLysMetHisArgArgAlaValGlu 357906 : TGTGAAAATGCACAGACGAGCGGTGGAG : 357934 vulgar: CbirOr301 158 251 . KQ414693.1 357476 357934 + 110 M 55 165 S 0 2 5 0 2 I 0 169 3 0 2 S 1 1 M 20 60 G 0 6 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 357477 357934 110 + . gene_id 1 ; sequence CbirOr301 ; gene_orientation + KQ414693.1 exonerate:protein2genome:local cds 357477 357643 . + . KQ414693.1 exonerate:protein2genome:local exon 357477 357643 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local splice5 357644 357645 . + . intron_id 1 ; splice_site "GT" KQ414693.1 exonerate:protein2genome:local intron 357644 357816 . + . intron_id 1 KQ414693.1 exonerate:protein2genome:local splice3 357815 357816 . + . intron_id 0 ; splice_site "AG" KQ414693.1 exonerate:protein2genome:local cds 357817 357934 . + . KQ414693.1 exonerate:protein2genome:local exon 357817 357934 . + . insertions 6 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 357477 357934 110 + . alignment_id 1 ; Query CbirOr301 ; Align 357477 159 165 ; Align 357818 215 60 ; Align 357884 235 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr300PSE(S/F) Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 330 -> 387 Target range: 358648 -> 358819 331 : TyrGlyIleProTrpTyrValAlaProValArgIleGlnLysLeuValMetLeuLeuL : 350 |||.!! ! !||||||..!||| !!|||! ! !|||||| !:!!:!:! !:!!: TyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuLeuTyrIleM 358649 : TACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGTTATACATCA : 358706 351 : euGlnArgSerThrLysThrPheValLeuGlnIleGlyGlyLeuPheIleGlySerLe : 369 !!|||!.!|||! !:!! !!:! !!!!..!|||||||||||||||:!: !|||! etGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheValProSerTy 358707 : TGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGTGCCGAGTTA : 358763 370 : uGluGlyPheThrThrLeuIleSerThrSerLeuSerTyrPheThrMetIleTyr : 387 !:!!||||||:!!|||:!!! !..!:!!! ! !||| ::::::|||::: rGlnGlyPheSerThrValThrAspSerIleAsnSer***AsnSerLeuIlePhe 358764 : CCAAGGATTTTCTACGGTAACAGATTCTATCAATagttaaaattcattaattttt : 358819 vulgar: CbirOr300PSE(S/F) 330 387 . KQ414693.1 358648 358819 + 101 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358649 358819 101 + . gene_id 1 ; sequence CbirOr300PSE(S/F) ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 358649 358819 . + . KQ414693.1 exonerate:protein2genome:local exon 358649 358819 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358649 358819 101 + . alignment_id 1 ; Query CbirOr300PSE(S/F) ; Align 358649 331 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr302PN Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 262 -> 319 Target range: 358648 -> 358819 263 : TyrAsnValArgTrpTyrValThrProValLysIleGlnLysLeuLeuLeuPheIleM : 282 |||!:! ! !!||||||..!.!! !!||| !|||||| !||||||!:!|||| TyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuLeuTyrIleM 358649 : TACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGTTATACATCA : 358706 283 : etGlnSerThrThrLysAlaTyrTyrLeuAsnIleGlyAsnLeuIleValAlaSerIl : 301 ||||| !:!!! !:!!! !||| !!!!!:::||||||..!|||.!!||| !!||| etGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheValProSerTy 358707 : TGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGTGCCGAGTTA : 358763 302 : eGluGlyPheSerLysLeuValSerMetAlaIleSerTyrPheThrLeuIleTyr : 319 !:!!|||||||||! !:!!..!..! !! !||| :::||||||::: rGlnGlyPheSerThrValThrAspSerIleAsnSer***AsnSerLeuIlePhe 358764 : CCAAGGATTTTCTACGGTAACAGATTCTATCAATagttaaaattcattaattttt : 358819 vulgar: CbirOr302PN 262 319 . KQ414693.1 358648 358819 + 103 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358649 358819 103 + . gene_id 1 ; sequence CbirOr302PN ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 358649 358819 . + . KQ414693.1 exonerate:protein2genome:local exon 358649 358819 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358649 358819 103 + . alignment_id 1 ; Query CbirOr302PN ; Align 358649 263 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr299PN(F) Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 285 -> 343 Target range: 358648 -> 358896 286 : TyrThrThrArgTrpTyrThrValSerAlaGlnLeuGlnLysLeuLeuLeuPheIleM : 305 |||!:!:!! !!|||||||||!.!|||!.!! !|||||| !||||||!:!|||| TyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuLeuTyrIleM 358649 : TACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGTTATACATCA : 358706 306 : etGlnLysThrThrLysAsnTyrTyrPheIleValGlyGlyIlePheAlaAlaSerLe : 324 ||||| ! :!!! !:!!:!!||| !!||| :!!||||||:!:|||!.! !!|||! etGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheValProSerTy 358707 : TGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGTGCCGAGTTA : 358763 325 : uGluGlyPheAlaThr >>>> Target Intron 1 >>>> MetMetSerThrS : 334 !:!!||||||:!!||| 74 bp ::!! !!!! !| rGlnGlyPheSerThr++ ++LeuThrArgMetS 358764 : CCAAGGATTTTCTACGgt.........................agttGACCAGAATGT : 358867 335 : erIleSerTyrPheMetValIleTyrSer : 343 ||.!!|||||||||||||||!!: !||| erPheSerTyrPheMetValMetArgSer 358868 : CGTTCAGCTATTTTATGGTCATGCGTTCt : 358896 vulgar: CbirOr299PN(F) 285 343 . KQ414693.1 358648 358896 + 141 M 44 132 5 0 2 I 0 70 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358649 358896 141 + . gene_id 1 ; sequence CbirOr299PN(F) ; gene_orientation + KQ414693.1 exonerate:protein2genome:local cds 358649 358780 . + . KQ414693.1 exonerate:protein2genome:local exon 358649 358780 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local splice5 358781 358782 . + . intron_id 1 ; splice_site "GT" KQ414693.1 exonerate:protein2genome:local intron 358781 358854 . + . intron_id 1 KQ414693.1 exonerate:protein2genome:local splice3 358853 358854 . + . intron_id 0 ; splice_site "ag" KQ414693.1 exonerate:protein2genome:local cds 358855 358896 . + . KQ414693.1 exonerate:protein2genome:local exon 358855 358896 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358649 358896 141 + . alignment_id 1 ; Query CbirOr299PN(F) ; Align 358649 286 132 ; Align 358855 330 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr308 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 325 -> 390 Target range: 1395323 -> 1395515 326 : SerThrAsnIlePheArgThrThrTyrAsnThrLysTrpTyrAlaAlaProLeuTr : 344 ||| !:::||| !!.!.!!.!!|||!:!:!! |||||| ! ! !! ! SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 345 : pLeuGlnLysValIleLeuPheIleMetGlnArgSerSerIleArgSerThrLeuT : 363 !::! ! :!!|||:!!.!!:!!||| !||||||..!! !|||! !|||:!!| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 364 : hrAlaAlaSerLeuPheAspAlaSerLeuGluGlyPheAlaThrLeuMetSerMet : 381 |||||!.!!.!!!!.!.||| !||||||||||||||||||!.! :!:|||:!: hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsn---ValSerLeu 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAAT---GTAAGTCTA : 1395486 382 : SerMetSerTyrValMetPheMetLeu : 390 !.!.|||||||||||| !|||||| LeuPheSerTyrValMetHisMetLeu 1395487 : CTTTTTTCTTATGTTATGCATATGCTA : 1395515 vulgar: CbirOr308 325 390 . KQ414716.1 1395323 1395515 + 107 M 52 156 G 1 0 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395515 107 + . gene_id 1 ; sequence CbirOr308 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395515 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395515 . + . insertions 0 ; deletions 1 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395515 107 + . alignment_id 1 ; Query CbirOr308 ; Align 1395324 326 156 ; Align 1395480 379 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr293 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 136 -> 213 Target range: 20556 -> 20325 137 : TyrLeuThrLeuGlnPheLeuProLeuIleLeuAspValIleValProLeuAsnThrSer : 156 !:!||| !:!!! ||| !|||:!!|||||||||:!! !!.!|||||||||! !!!! PheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsnLysThr 20556 : TTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAACAAAACG : 20499 157 : ArgSerLeuLysLeuMetAlaIleThrGluTyrPheValAsnArgGluLysTyrAlaSer : 176 |||!.!! ! !!!!:!: ! !.!! ! |||!:::!!:!!! !|||:!!||| !! ! ArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMet 20498 : AGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATG : 20439 177 : AlaMetLeuLeuHisGluIleLeuThrValTyrThrGlyValMetThrLeuCysSerThr : 196 !|||:!!:!!||| !!!:!!!..!||| !! !! ! !:!:! !!!!|||:!! ! IleMetIleIleHisIleMetPheValValIleMetValCysValIlePheCysAlaCys 20438 : ATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGTGCTTGC : 20379 197 : GlyLeuThrIleMetThrTyrIleLeuHisAlaCysAlaLeuLeuLysIle : 213 ! !:!!!.! !:!! ! !:!:! !|||||||||!.!|||||| :!! AspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaVal 20378 : GACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: CbirOr293 136 213 . KQ414772.1 20556 20325 - 116 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20556 116 - . gene_id 1 ; sequence CbirOr293 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20556 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20556 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20326 20556 116 - . alignment_id 1 ; Query CbirOr293 ; Align 20557 137 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr293 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 87 -> 234 Target range: 42988 -> 42415 88 : LysValLysGlnLeuIleGlyGlnValGlyAspAspLeuAsnLeuLeuGlnAspLysSer : 107 :!!:!!||| !|||.!!! ! ..! !:!!|||! !! ! !!:! |||||| GlnLeuLysThrLeuPheGluCysThrPheAsnAspTrpIleThrSerArgProLysSer 42988 : CAGCTGAAAACACTATTCGAATGCACATTCAACGATTGGATAACGAGCCGACCGAAAAGC : 42931 108 : GluIleAspIleIleLysLysTyrAlaAspSerIleAsnPheIleThrIleTyrGlyIle : 127 |||!!:||||||!!:!!.||||||||| !!! ! |||.!!!.! !! !:!! GluMetAspIleMetAsnLysTyrAlaArgArgGlyLeuPhePheAsnArgLeuTyrVal 42930 : GAAATGGACATTATGAACAAGTATGCGAGAAGAGGATTGTTTTTCAATCGTTTGTACGTC : 42871 128 : {V} >>>> Target Intron 1 >>>> {al}PheCysHisPheGlyIleLeuCys : 136 {|} 132 bp {||} ! ! ! ! !!.!! ! {V}++ ++{al}ThrGlyIleCysCysPheThrMet 42870 : {G}gt.........................ag{TA}ACTGGAATATGTTGCTTCACAATG : 42712 137 : TyrLeuThrLeuGlnPheLeuProLeuIleLeuAspValIleValProLeuAsnThrSer : 156 !:!:!!:!! !! !:!:!!|||! !:!!! !||||||!!::!! !! !||| !||| PheIleSerAlaProTyrIleProHisValTyrAspValMetLeuSerLysAsnGluSer 42711 : TTTATCTCTGCGCCTTATATACCGCATGTATATGATGTTATGTTATCGAAAAACGAGTCA : 42652 157 : ArgSerLeuLysLeuMetAlaIleThrGluTyrPheValAsnArgGluLysTyrAlaSer : 176 |||!.!||| !!!!!: ! !.!! ! ||| !|||:!!!:!!!:|||||| !! ! ArgLysLeuGlyPheIleTyrProAlaTyrTyrGlyValAspGlnAspLysTyrTyrTyr 42651 : CGAAAGTTGGGTTTCATTTACCCTGCCTATTATGGCGTTGATCAAGACAAGTATTATTAC : 42592 177 : AlaMetLeuLeuHisGluIleLeuThrValTyrThrGlyValMetThrLeuCysSerThr : 196 !!!::!! !||| !! !! ! !! !! ..!! ! !!.!.|||!!! !||| ! TyrIleIleAlaHisMetThrSerGlyGlyLeuValValPhePheThrPheIleSerCys 42591 : TATATAATAGCTCACATGACATCTGGGGGCTTAGTGGTGTTTTTCACCTTTATCTCCTGC : 42532 197 : GlyLeuThrIleMetThrTyrIleLeuHisAlaCysAlaLeuLeuLysIleAlaSerHis : 216 ! ! !! ! !|||!.! !:!:! !|||||||||!.!|||||| !|||:!!.!! ! AspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuLeuIleSerGly*** 42531 : GACACGATTTACATGAATATCGTGCAACACGCGTGCGGATTGTTGTTGATTTCTGGGTAA : 42472 217 : ArgMetLysHisAlaIleGlnGluAspValLeuAlaMetSerAsnProValLys : 234 ! !! !!!. ! !...||| !!:!!|||...::: ||| :::::! ThrAsnLeuGlnIle***SerGluTyrLeuLeuGlyIlePheAsnGlnIleGlu 42471 : ACGAATTTACAGATTTAATCCGAGTATCTTCTGggaattttcaatcaaattgaA : 42416 vulgar: CbirOr293 87 234 . KQ414772.1 42988 42415 - 103 M 40 120 S 0 1 5 0 2 I 0 128 3 0 2 S 1 2 M 106 318 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42416 42988 103 - . gene_id 2 ; sequence CbirOr293 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 42868 42988 . - . KQ414772.1 exonerate:protein2genome:local exon 42868 42988 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 42866 42867 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 42736 42867 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 42736 42737 . - . intron_id 0 ; splice_site "ag" KQ414772.1 exonerate:protein2genome:local cds 42416 42735 . - . KQ414772.1 exonerate:protein2genome:local exon 42416 42735 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42416 42988 103 - . alignment_id 2 ; Query CbirOr293 ; Align 42989 88 120 ; Align 42734 129 318 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr293 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 87 -> 214 Target range: 29930 -> 29358 88 : LysValLysGlnLeuIleGlyGlnValGlyAspAspLeuAsnLeuLeuGlnAspLysSer : 107 :!!:!!|||:!!:!!|||! ! :!! !:!!|||! ! ! !!:! |||||| GlnLeuLysGluMetIleGluCysLeuPheAsnAspTrpValThrThrArgProLysSer 29930 : CAGCTAAAGGAGATGATAGAGTGCTTATTCAACGATTGGGTAACGACACGGCcgaaaagt : 29873 108 : GluIleAspIleIleLysLysTyrAlaAspSerIleAsnPheIleThrIleTyrGlyIle : 127 ||||||:::|||::: ! ||||||||| !!! ! |||.!!!.! !! !:!! GluIleGluIleMetAspLysTyrAlaArgArgGlyLeuPhePheAsnArgLeuTyrVal 29872 : gaaattgaaattatggACAAGTATGCGAGAAGAGGCCTGTTTTTCAATCGTTTGTACGTC : 29813 128 : {V} >>>> Target Intron 1 >>>> {al}PheCysHisPheGlyIleLeuCys : 136 {!} 191 bp {.!} ! ! !||| !! !:!! {A}++ ++{la}AsnGlyIlePheCysTyrValIle 29812 : {G}gt.........................ag{CA}AATGGAATCTTCTGCTACGTTATA : 29595 137 : TyrLeuThrLeuGlnPheLeuProLeuIleLeuAspValIleValProLeuAsnThrSer : 156 !:! !:!!:!! !.!. !|||! !:!!||||||:!!||| !||| !||| !||| PheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSer 29594 : TTCACCTCAGTGGCGATAACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCG : 29535 157 : ArgSerLeuLysLeuMetAlaIleThrGluTyrPheValAsnArgGluLysTyrAlaSer : 176 |||.!!:!! !!!!!: ! !.!! ! ||| !:!!:!!..!|||:!!:!! !! ! ArgGlyValGlyPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyr 29534 : CGCGGAGTGGGCTTCATTTATCCTGCATACTACGGTCTTGACGAAGAGGAGCATTACTAC : 29475 177 : AlaMetLeuLeuHisGluIleLeuThrValTyrThrGlyValMetThrLeuCysSerThr : 196 !:!!:!! !||| !:!!! !..!:!! !..!! ! !!.!...!! ! !||| ! TyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIleSerCys 29474 : TATCTGATGGGTCACATGCTTTCCGTGATAACCGTCGTGTTTTTCGTCTACATCTCCTGT : 29415 197 : GlyLeuThrIleMetThrTyrIleLeuHisAlaCysAlaLeuLeuLysIleAla : 214 ! ! !! ! !|||!.! !:!:! !|||||||||!.!||||||!!.:!!:!! AspThrIleTyrMetAsnValValGlnHisAlaCysGlyLeuLeuAsnValSer 29414 : GACACGATCTATATGAATGTCGTGCAACACGCGTGTGGATTATTGAACGTCTCT : 29359 vulgar: CbirOr293 87 214 . KQ414772.1 29930 29358 - 101 M 40 120 S 0 1 5 0 2 I 0 187 3 0 2 S 1 2 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29359 29930 101 - . gene_id 3 ; sequence CbirOr293 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 29810 29930 . - . KQ414772.1 exonerate:protein2genome:local exon 29810 29930 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 29808 29809 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 29619 29809 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 29619 29620 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 29359 29618 . - . KQ414772.1 exonerate:protein2genome:local exon 29359 29618 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 29359 29930 101 - . alignment_id 3 ; Query CbirOr293 ; Align 29931 88 120 ; Align 29617 129 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr299PN(F) Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 71 -> 143 Target range: 45988 -> 45772 72 : LeuPheGlyValPheIleThrValGlyMetPheIleThrLeuAlaValPheGlyPheTyr : 91 :!!!!...!:!! ! !:!!||| !!!:!:!||| !:!!:!!||||||..! ! ValLeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThrAla 45988 : GTTTTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCG : 45931 92 : GlnPheLeuProAspLeuLeuAspMetIleAlaProLeuAsnAspSerArgLysHisPhe : 111 ! .!!:!!||| !:!!||||||:!:|||:!!|||||||||!!:|||||| !!.!!!. ProLeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArgLeu 45930 : CCCCTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTG : 45871 112 : LeuThrPheAspAlaGluTyrPheValAspGlnLysGluTyrPheTyrProIleValThr : 131 ! !.!!!:! ! ||| ! ! !!:! !!:!!! ! ! !!:|||!:!||| !:!!||| ! TyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValValGly 45870 : TACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTGGGG : 45811 132 : HisGlyLeuThrAlaValTyrIleGlyGlyThrVal : 143 :!! ! !.!!..!:!! !!:!.!||| !||| TyrThrSerAlaCysIleGlyMetAlaGlyLeuVal 45810 : TACACCAGCGCGTGCATAGGAATGGCCGGACTCGTG : 45773 vulgar: CbirOr299PN(F) 71 143 . KQ414772.1 45988 45772 - 101 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45773 45988 101 - . gene_id 1 ; sequence CbirOr299PN(F) ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45773 45988 . - . KQ414772.1 exonerate:protein2genome:local exon 45773 45988 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45773 45988 101 - . alignment_id 1 ; Query CbirOr299PN(F) ; Align 45989 72 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr292PI Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 94 -> 174 Target range: 20565 -> 20325 95 : ThrSerCysTyrLeuIleLeuGlnLeuLeuProLeuIleLeuAspValIleValProLeu : 114 .!!:!! !:!||| !:!!! !!! !|||:!!|||||||||:!! !!.!|||||| AlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeu 20565 : GCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTG : 20508 115 : AsnAlaSerArgSerLeuAsnLeuLeuAlaIleThrGluTyrPheValAsnArgGluLys : 134 ||| !!!!|||!.!! ! !!!:!! ! !.!! ! |||!:::!!:!!! !|||:!! AsnLysThrArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGln 20507 : AACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAA : 20448 135 : TyrAlaCysValIleLeuLeuHisGluLeuLeuThrIleTyrValGlyThrIleThrLeu : 154 ||| ! :!!!!::!!:!!||| !:!!!!!..!:!: !:!!! ! !:!!! !!!! TyrTyrMetIleMetIleIleHisIleMetPheValValIleMetValCysValIlePhe 20447 : TACTACATGATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTC : 20388 155 : CysSerThrGlyLeuIlePheMetThrHisLeuLeuHisGlyCysAlaLeuLeuLysVal : 174 |||:!! !! !:!!! !!:!:!! ! !:!!! !|||!.!|||!.!|||||| ||| CysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaVal 20387 : TGTGCTTGCGACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTC : 20328 vulgar: CbirOr292PI 94 174 . KQ414772.1 20565 20325 - 109 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20565 109 - . gene_id 1 ; sequence CbirOr292PI ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20565 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20565 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20326 20565 109 - . alignment_id 1 ; Query CbirOr292PI ; Align 20566 95 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr291INT Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 36 -> 115 Target range: 20562 -> 20325 37 : SerCysTyrLeuThrLeuGlnLeuLeuProLeuIleLeuAspValIleValProLeuAsn : 56 :!! !:!||| !:!!! !!! !|||:!!|||||||||:!! !!.!||||||||| AlaIlePheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsn 20562 : GCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAAC : 20505 57 : AlaThrArgSerLeuLysLeuIleThrIleThrGluTyrPheValAsnArgGluLysTyr : 76 !||||||!.!! ! !!!!:!! ! !.!! ! |||!:::!!:!!! !|||:!!||| LysThrArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyr 20504 : AAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATAC : 20445 77 : AlaCysAlaIleLeuLeuHisGluMetLeuThrValTyrValGlyAlaIleThrThrCys : 96 ! !!!::!!:!!||| !|||!!!..!||| !:!!! !..!:!!! ! !||| TyrMetIleMetIleIleHisIleMetPheValValIleMetValCysValIlePheCys 20444 : TACATGATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGT : 20385 97 : SerThrGlyLeuIlePheMetAlaTyrIleLeuHisGlyCysAlaLeuLeuLysIle : 115 :!! !! !:!!! !!:!:!! ! !:!:! !|||!.!|||!.!|||||| :!! AlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaVal 20384 : GCTTGCGACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: CbirOr291INT 36 115 . KQ414772.1 20562 20325 - 116 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20562 116 - . gene_id 1 ; sequence CbirOr291INT ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20562 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20562 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20326 20562 116 - . alignment_id 1 ; Query CbirOr291INT ; Align 20563 37 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr291INT Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 35 -> 121 Target range: 14139 -> 13881 36 : IleSerCysTyrLeuThrLeuGlnLeuLeuProLeuIleLeuAspValIleValProLeu : 55 :!!! ! !:!:!!||| !! !:!! !|||! !|||||||||:!!:!!:!!||| ! ValIleLeuPheValThrThrProValThrProHisIleLeuAspIleLeuLeuProLys 14139 : GTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAG : 14082 56 : AsnAlaThrArgSerLeuLysLeuIleThrIleThrGluTyrPheValAsnArgGluLys : 75 |||! !:!!|||..!:!! !! !||| ! .!! ! ||||||..!:!!..!.!.||| AsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLys 14081 : AACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAG : 14022 76 : TyrAlaCysAlaIleLeuLeuHisGluMetLeuThrValTyrValGlyAlaIleThrThr : 95 |||! ! !|||:!! !||| ! !! !..!:!! !|||! ! ! !..! ! TyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyr 14021 : TACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTAC : 13962 96 : CysSerThrGlyLeuIlePheMetAlaTyrIleLeuHisGlyCysAlaLeuLeuLysIle : 115 !:!! !! ! !! !!:!!!: ! !:!:! !|||||||||!.!|||||| :!: ValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaVal 13961 : GTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTG : 13902 116 : AlaSerArgArgMetLys : 121 :!!.!. ::::::::: SerGly***LysIleArg 13901 : TCCGGgtaaaaaattcga : 13882 vulgar: CbirOr291INT 35 121 . KQ414772.1 14139 13881 - 102 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13882 14139 102 - . gene_id 2 ; sequence CbirOr291INT ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13882 14139 . - . KQ414772.1 exonerate:protein2genome:local exon 13882 14139 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13882 14139 102 - . alignment_id 2 ; Query CbirOr291INT ; Align 14140 36 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr290PSE(F) Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 134 -> 213 Target range: 20562 -> 20325 135 : SerCysTyrLeuThrPheGlnLeuLeuProLeuIleLeuAspValIleValProLeuAsn : 154 :!! !:!||| ! ! ! !!! !|||:!!|||||||||:!! !!.!||||||||| AlaIlePheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsn 20562 : GCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAAC : 20505 155 : ValSerArgSerLeuLysLeuIleAlaIleThrGluTyrPheLeuAsnArgGluLysTyr : 174 !!!!|||!.!! ! !!!!:!! ! !.!! ! |||!:::!!:!!! !|||:!!||| LysThrArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyr 20504 : AAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATAC : 20445 175 : ValCysValMetLeuLeuHisGluMetLeuThrValTyrIleGlyValIleThrAlaCys : 194 ! :!!|||:!!:!!||| !|||!!!..!||| !!!:! ! !:!!! ! !||| TyrMetIleMetIleIleHisIleMetPheValValIleMetValCysValIlePheCys 20444 : TACATGATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGT : 20385 195 : SerThrGlyLeuIleIleMetThrTyrIleLeuHisAlaCysAlaLeuPheLysIle : 213 :!! !! !:!!! ! !:!! ! !:!:! !|||||||||!.!|||!!. :!! AlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaVal 20384 : GCTTGCGACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: CbirOr290PSE(F) 134 213 . KQ414772.1 20562 20325 - 114 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20562 114 - . gene_id 1 ; sequence CbirOr290PSE(F) ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20562 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20562 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20326 20562 114 - . alignment_id 1 ; Query CbirOr290PSE(F) ; Align 20563 135 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr294 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 136 -> 213 Target range: 20556 -> 20325 137 : TyrIleIleLeuGluHisLeuProLeuLeuLeuAspValIleLeuProLeuAsnLysSer : 156 !:!:!! !:!! ! !|||:!!:!!||||||:!! ! !||||||||||||!!! PheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsnLysThr 20556 : TTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAACAAAACG : 20499 157 : ArgThrLeuLysSerIleAlaIleThrGluTyrPheValThrArgGluLysTyrIleTrp : 176 |||! !! ! !! !:!! ! !.!! ! |||!:::!! !! !|||:!!||| ! ! ArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMet 20498 : AGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATG : 20439 177 : ValThrLeuLeuHisGluIleIleAlaIleTyrIleArgValIleThrLeuCysCysThr : 196 :!!! !:!!:!!||| !!!:.!!!.!:!: !!!: ! !:!!! !!!!|||..! ! IleMetIleIleHisIleMetPheValValIleMetValCysValIlePheCysAlaCys 20438 : ATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGTGCTTGC : 20379 197 : GlyIleThrMetMetMetTyrIleLeuHisAlaCysAlaLeuPheLysIle : 213 ! !!!:!.! :!! !:!:! !|||||||||!.!|||!!. :!! AspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaVal 20378 : GACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: CbirOr294 136 213 . KQ414772.1 20556 20325 - 104 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20556 104 - . gene_id 1 ; sequence CbirOr294 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20556 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20556 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20326 20556 104 - . alignment_id 1 ; Query CbirOr294 ; Align 20557 137 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr307 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 145 -> 213 Target range: 14103 -> 13899 146 : IleLeuAspIleIleIleProLeuAsnGluSerArgProLeuArgLeuProIleGluVal : 165 ||||||||||||:!!:!!||| !|||||||||||| !:!! !! ! ! ! !!.! IleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAla 14103 : ATTTTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCC : 14046 166 : GluTyrPheValAspGlnGlnArgTyrPheTyrAlaIleSerLeuHisMetGlyMetThr : 185 ! ||||||..!|||:!!!!.!:!||| ! !|||! ! !||||||!.! ..! TyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerVal 14045 : TATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTG : 13986 186 : PheTyrAlaGlyMetMetIleMetThrAlaIleThrThrIlePheIleAlaTyrValSer : 205 .!! !!.!! !.!. :!: ..!||| ! !|||! !!:!||| ! !|||..! IleLeuValValPheTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGln 13985 : ATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAA : 13926 206 : HisAsnCysAlaIlePheGluIle : 213 |||..!|||!.!:!:!!.! :!: HisGlyCysGlyLeuLeuAlaVal 13925 : CACGGCTGCGGATTGTTGGCCGTG : 13900 vulgar: CbirOr307 145 213 . KQ414772.1 14103 13899 - 106 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13900 14103 106 - . gene_id 1 ; sequence CbirOr307 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13900 14103 . - . KQ414772.1 exonerate:protein2genome:local exon 13900 14103 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13900 14103 106 - . alignment_id 1 ; Query CbirOr307 ; Align 14104 146 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr302PN Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 85 -> 155 Target range: 20535 -> 20325 86 : ProValIleLeuAspIleIleLeuProLeuAsnLysThrArgProArgGluIleHisAla : 105 |||:!!|||||||||||| ! !|||||||||||||||||| !|||! !.!! ! ! ProIleIleLeuAspIleTyrAlaProLeuAsnLysThrArgLysArgValPheValTyr 20535 : CCGATCATCTTGGACATTTACGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTAT : 20478 106 : LeuLeuGluTyrPheIleAspLysAspAlaTyrPhePheProIleLeuCysHisTrpLeu : 125 ! ! ! ! |||!::!!:||| !!: !|||!:!.!. !!!::!! ||| :!! ProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMetIleMetIleIleHisIleMet 20477 : CCAGCCTATTACTGGATGGATCCTGAGCAATACTACATGATAATGATAATACACATAATG : 20418 126 : IleGlyLeuIleIleGlyCysTyrThrIleIleCysValSerThrSerLeuMetIleCys : 145 .!!! !:!!|||!!:! !||| !! !.!! !..! !..!! !!:!! !:!! !..! PheValValIleMetValCysValIlePheCysAlaCysAspMetAsnTyrValTyrAla 20417 : TTCGTGGTGATCATGGTCTGTGTCATATTCTGTGCTTGCGACATGAACTACGTGTACGCT : 20358 146 : ValGlnHisIleSerGlyLeuPheLysVal : 155 ||||||||| !!!!||||||!!. ||| ValGlnHisAlaCysGlyLeuLeuAlaVal 20357 : GTGCAGCACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: CbirOr302PN 85 155 . KQ414772.1 20535 20325 - 112 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20535 112 - . gene_id 1 ; sequence CbirOr302PN ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20535 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20535 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20326 20535 112 - . alignment_id 1 ; Query CbirOr302PN ; Align 20536 86 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr302PN Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 62 -> 160 Target range: 14178 -> 13884 63 : TyrHisThrLysLeuPheLeuThrIleIleIleSerSerCysIleIleTyrGlyIlePhe : 82 ||| !..!|||! !! :!!..!! ! ||| !!!! !|||:!:!:!! !! ! TyrIleValLysTyrSerIleValAsnAlaIleValCysValIleLeuPheValThrThr 14178 : TACATTGTCAAATATTCGATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGACCACG : 14121 83 : GluAlaMetProValIleLeuAspIleIleLeuProLeuAsnLysThrArgProArgGlu : 102 !!.!! ||| !||||||||||||:!!|||||| !|||:!!:!!||| ! !! ! ProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAla 14120 : CCGGTGACACCGCATATTTTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCG : 14061 103 : IleHisAlaLeuLeuGluTyrPheIleAspLysAspAlaTyrPhePheProIleLeuCys : 122 ! ! !! ! ! ! ||||||! !|||:!! !! !||| ! ! !|||:!! TyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThr 14060 : TACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACG : 14001 123 : HisTrpLeuIleGlyLeuIleIleGlyCysTyrThrIleIleCysValSerThrSerLeu : 142 ||| ! ! !! !:!!:!!:!:! !! !|||..! !:!!..! !..!||||||! ! HisMetAlaSerValIleLeuValValPheTyrValTyrValAlaCysAspThrSerTyr 14000 : CACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTAC : 13941 143 : MetIleCysValGlnHisIleSerGlyLeuPheLysValAlaAsnTyrArgIle : 160 !!: ! !||||||||| !!!!||||||!!. |||:!!... :::||| IleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly***LysIle 13940 : ATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaatt : 13885 vulgar: CbirOr302PN 62 160 . KQ414772.1 14178 13884 - 102 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13885 14178 102 - . gene_id 2 ; sequence CbirOr302PN ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13885 14178 . - . KQ414772.1 exonerate:protein2genome:local exon 13885 14178 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13885 14178 102 - . alignment_id 2 ; Query CbirOr302PN ; Align 14179 63 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr304CTE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 121 -> 213 Target range: 38048 -> 37772 122 : ThrIlePhePheLeuLeuLeuAlaThrLeuCysPheLeuGlyLeuLeuThrLeuGlyCys : 141 :!!:!:!:!||| !:!! !!.! !!!!|||!:!:!! !!!! !:!!:!!!.! ! SerLeuTyrPheThrValAsnGlyLeuPheCysTyrValIlePheThrSerValAlaIle 38048 : TCTCTGTATTTCACAGTAAACGGACTGTTTTGCTACGTTATATTCACCTCAGTGGCGATT : 37991 142 : ValProArgIleLeuAspIleIleMetProLeuAsnGluSerArgProArgGlnLeuPro : 161 ..!||||||:!!||||||:!!||| ||| !|||||||||||| ! !.!.!!! ! ThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValAspPheIle 37990 : ACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTCATT : 37931 162 : IleIleValGluTyrPheIleAspGluGluThrTyrPheTyrAlaIleLeuIleHisIle : 181 ! !!.! ! ||| !:!!||||||||| !:!!!:!||| !:!::!! !|||!!: TyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHisMet 37930 : TATCCTGCATACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCACATG : 37871 182 : AlaThrAlaIleTyrAlaGlySerValThrLeuAlaAlaCysAlaThrMetProIleSer : 201 ! !!.!||| !!.!! !! ! !!..!! ! !:!!|||! !|||!!: !!!:||| LeuCysValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMetSer 37870 : CTCTGCGTGATAACTGTAGTGTTTTTCGTGTACATCTCCTGTGACACGATCTACATGAGC : 37811 202 : TyrIleLeuHisValCysAlaMetPheLysIleAla : 213 !:!!! !|||!.!|||!.!:!:.!.!!.:!!:!! IleValGlnHisAlaCysGlyLeuLeuAsnValSer 37810 : ATCGTTCAACACGCGTGCGGATTACTGAACGTCTCT : 37773 vulgar: CbirOr304CTE 121 213 . KQ414772.1 38048 37772 - 130 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37773 38048 130 - . gene_id 1 ; sequence CbirOr304CTE ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37773 38048 . - . KQ414772.1 exonerate:protein2genome:local exon 37773 38048 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 37773 38048 130 - . alignment_id 1 ; Query CbirOr304CTE ; Align 38049 122 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr304CTE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 130 -> 213 Target range: 24428 -> 24179 131 : LeuCysPheLeuGlyLeuLeuThrLeuGlyCysValProArgIleLeuAspIleIleMet : 150 !!!|||!:!:!! !!!! !.!!:!!!.! !..!||||||:!!||||||:!!||| ! PheCysTyrValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSer 24428 : TTCTGCTACGTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCG : 24371 151 : ProLeuAsnGluSerArgProArgGlnLeuProIleIleValGluTyrPheIleAspGlu : 170 ||| !|||||||||||| ! ! !!! ! ! !!.!.!.||| !:!!|||||| ProLysAsnGluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGlu 24370 : CCGAAAAACGAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAA : 24311 171 : GluThrTyrPheTyrAlaIleLeuIleHisIleAlaThrAlaIleTyrAlaGlySerVal : 190 ||| !:!!!:!||| !:!::!! !|||!!: !:!!!.!||| !!.!! !! ! !! GluGluHisTyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePhe 24310 : GAGGAGCATTACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTC : 24251 191 : ThrLeuAlaAlaCysAlaThrMetProIleSerTyrIleLeuHisValCysAlaMetPhe : 210 ..!! ! !:!!|||! !|||!!: !!!:!:! !:!:! !|||!.!|||!.!:!:!!. ValTyrIleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeu 24250 : GTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTG : 24191 211 : LysIleAla : 213 !!.:!!:!! AsnLeuSer 24190 : AACCTCTCT : 24180 vulgar: CbirOr304CTE 130 213 . KQ414772.1 24428 24179 - 119 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24180 24428 119 - . gene_id 2 ; sequence CbirOr304CTE ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24180 24428 . - . KQ414772.1 exonerate:protein2genome:local exon 24180 24428 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 24180 24428 119 - . alignment_id 2 ; Query CbirOr304CTE ; Align 24429 131 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr304CTE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 124 -> 213 Target range: 29625 -> 29358 125 : PheLeuLeuLeuAlaThrLeuCysPheLeuGlyLeuLeuThrLeuGlyCysValProArg : 144 ||| ! ! !!.!! !!!!|||!:!:!! !!!! !:!!:!!!.! ..!|||||| PheThrAlaAsnGlyIlePheCysTyrValIlePheThrSerValAlaIleThrProArg 29625 : tTCACAGCAAATGGAATCTTCTGCTACGTTATATTCACCTCAGTGGCGATAACCCCTCGT : 29568 145 : IleLeuAspIleIleMetProLeuAsnGluSerArgProArgGlnLeuProIleIleVal : 164 :!!||||||:!!||| !||| !|||||||||||| ! ! !!! ! ! !!.! ValLeuAspLeuIleSerProLysAsnGluSerArgGlyValGlyPheIleTyrProAla 29567 : GTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTGGGCTTCATTTATCCTGCA : 29508 165 : GluTyrPheIleAspGluGluThrTyrPheTyrAlaIleLeuIleHisIleAlaThrAla : 184 ! ||| !:!!||||||||| !:!!!:!||| !:!::!! !|||!!: !:!!!.! TyrTyrGlyLeuAspGluGluGluHisTyrTyrTyrLeuMetGlyHisMetLeuSerVal 29507 : TACTACGGTCTTGACGAAGAGGAGCATTACTACTATCTGATGGGTCACATGCTTTCCGTG : 29448 185 : IleTyrAlaGlySerValThrLeuAlaAlaCysAlaThrMetProIleSerTyrIleLeu : 204 ||| !!.!! !! ! !!..!! ! !:!!|||! !|||!!: !!!:!:! !:!:! ! IleThrValValPhePheValTyrIleSerCysAspThrIleTyrMetAsnValValGln 29447 : ATAACCGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATCTATATGAATGTCGTGCAA : 29388 205 : HisValCysAlaMetPheLysIleAla : 213 |||!.!|||!.!:!:!!.!!.:!!:!! HisAlaCysGlyLeuLeuAsnValSer 29387 : CACGCGTGTGGATTATTGAACGTCTCT : 29359 vulgar: CbirOr304CTE 124 213 . KQ414772.1 29625 29358 - 118 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29359 29625 118 - . gene_id 3 ; sequence CbirOr304CTE ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29359 29625 . - . KQ414772.1 exonerate:protein2genome:local exon 29359 29625 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 29359 29625 118 - . alignment_id 3 ; Query CbirOr304CTE ; Align 29626 125 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr312 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 137 Query range: 140 -> 214 Target range: 42697 -> 42475 141 : ProPheAlaProSerIleLeuAspIlePheMetProLeuAsnValSerArgProArgGln : 160 |||!:! !||| !:!!! !|||:!!.!.:!: !! !|||! !|||||| ! ! ProTyrIleProHisValTyrAspValMetLeuSerLysAsnGluSerArgLysLeuGly 42697 : CCTTATATACCGCATGTATATGATGTTATGTTATCGAAAAACGAGTCACGAAAGTTGGGT : 42640 161 : LeuLeuPheProGlyGluTyrPheValAspGlnGluLysTyrPheTyrAlaIleTrpLeu : 180 !!!:!!!:!|||!.! ! ||| !|||||||||!!:||||||!:!||| !||| ! PheIleTyrProAlaTyrTyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAla 42639 : TTCATTTACCCTGCCTATTATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCT : 42580 181 : HisLeuAspIleThrLeuSerLeuValValThrThrLeuIleGlyThrGluSerLeuTyr : 200 |||:!! ! ! !! !:!!||| !! !|||!!!|||..! !!!:!!!:!!||| HisMetThrSerGlyGlyLeuValValPhePheThrPheIleSerCysAspThrIleTyr 42579 : CACATGACATCTGGGGGCTTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTAC : 42520 201 : IleIleTyrIleGlnHisValCysGlyMetPheGlnValAla : 214 !!:! ! !:!:||||||!.!||||||:!!!!. !:!!:!! MetAsnIleValGlnHisAlaCysGlyLeuLeuLeuIleSer 42519 : ATGAATATCGTGCAACACGCGTGCGGATTGTTGTTGATTTCT : 42476 vulgar: CbirOr312 140 214 . KQ414772.1 42697 42475 - 137 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42476 42697 137 - . gene_id 1 ; sequence CbirOr312 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42476 42697 . - . KQ414772.1 exonerate:protein2genome:local exon 42476 42697 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42476 42697 137 - . alignment_id 1 ; Query CbirOr312 ; Align 42698 141 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr312 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 140 -> 214 Target range: 33637 -> 33415 141 : ProPheAlaProSerIleLeuAspIlePheMetProLeuAsnValSerArgProArgGln : 160 |||||| !||| !.!!:!!|||:!! :!! !! !|||! !|||||| ! !... ProPheIleProHisPheIleAspValAlaLeuSerLysAsnGluSerArgLysLeuSer 33637 : CCTTTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAACGAGTCACGAAAATTAAGT : 33580 161 : LeuLeuPheProGlyGluTyrPheValAspGlnGluLysTyrPheTyrAlaIleTrpLeu : 180 |||:!!!:!|||!.! ! ||| !:!!||||||!::||||||:::||| ::: ! LeuMetTyrProAlaTyrTyrGlyIleAspGlnAspLysTyrTyrTyrTyrLeuMetAla 33579 : TTGATGTACCCTGCCTATTACGGCATTGACCAGGacaagtattattattatctaatgGCT : 33520 181 : HisLeuAspIleThrLeuSerLeuValValThrThrLeuIleGlyThrGluSerLeuTyr : 200 |||:!! ! !.!! !:!! !||| !! !..!!!!!!:..! !!!:!!!:!!||| HisMetMetSerAlaGlyAlaAlaValPhePheValPheMetSerCysAspThrIleTyr 33519 : CACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATGTCCTGCGACACGATTTAT : 33460 201 : IleIleTyrIleGlnHisValCysGlyMetPheGlnValAla : 214 !!:! ! !:!!||||||!.!||||||:!!!!. :!!:!! MetAsnIleValGlnHisAlaCysGlyLeuLeuPheIleSer 33459 : ATGAATATCGTTCAACACGCGTGCGGATTGTTGTTCATTTCC : 33416 vulgar: CbirOr312 140 214 . KQ414772.1 33637 33415 - 135 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33416 33637 135 - . gene_id 2 ; sequence CbirOr312 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33416 33637 . - . KQ414772.1 exonerate:protein2genome:local exon 33416 33637 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 33416 33637 135 - . alignment_id 2 ; Query CbirOr312 ; Align 33638 141 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr289 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 140 -> 214 Target range: 20547 -> 20325 141 : LeuGlnPheLeuProValIleLeuAspLeuIleLeuProLeuAsnGluSerArgProLeu : 160 :!!! ||| !|||:!!|||||||||:!! ! !|||||||||:!!!!!||| !! ! ValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsnLysThrArgLysArg 20547 : GTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAACAAAACGAGAAAACGT : 20490 161 : HisLeuIleValPheAlaGluTyrPheIleAsnGlnGluGluTyrLeuTyrAlaMetLeu : 180 !!!:!! ! ||| ! |||!::!!::!!! |||:!!|||! ! !|||:!! ValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMetIleMetIle 20489 : GTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATGATAATGATA : 20430 181 : LeuHisGluIlePheAlaValHisLeuAlaAlaIleAlaLeuCysCysThrSerThrThr : 200 :!!||| !!!:|||!.!||| !:!!!.!..!:!! !!!!|||..! !..!! !!.! IleHisIleMetPheValValIleMetValCysValIlePheCysAlaCysAspMetAsn 20429 : ATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGTGCTTGCGACATGAAC : 20370 201 : IleMetSerTyrIleLeuHisGlyCysAlaLeuLeuLysVal : 214 !:!!! ! !:!:! !|||!.!|||!.!|||||| ||| TyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaVal 20369 : TACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: CbirOr289 140 214 . KQ414772.1 20547 20325 - 125 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20547 125 - . gene_id 1 ; sequence CbirOr289 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20547 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20547 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20326 20547 125 - . alignment_id 1 ; Query CbirOr289 ; Align 20548 141 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr289 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 133 -> 221 Target range: 14142 -> 13878 134 : CysLeuLeuCysAlaGlyIleLeuGlnPheLeuProValIleLeuAspLeuIleLeuPro : 153 |||:!!:!! !! !! ! !! ! ! !||| !|||||||||:!!:!!|||||| CysValIleLeuPheValThrThrProValThrProHisIleLeuAspIleLeuLeuPro 14142 : TGTGTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATTTTGGACATTTTACTACCG : 14085 154 : LeuAsnGluSerArgProLeuHisLeuIleValPheAlaGluTyrPheIleAsnGlnGlu : 173 !|||||||||||| !:!! ! !||| ! ||| ! ||||||! !:!!:!!.!. LysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHis 14084 : AAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCAT : 14025 174 : GluTyrLeuTyrAlaMetLeuLeuHisGluIlePheAlaValHisLeuAlaAlaIleAla : 193 :!!||| ! !!!::!! !||| ! ! !!.!:!!! !:!!!.! ! !!.! LysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrVal 14024 : AAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTG : 13965 194 : LeuCysCysThrSerThrThrIleMetSerTyrIleLeuHisGlyCysAlaLeuLeuLys : 213 ! ! !..! !..!|||!:! !!!:! ! !:!:! !|||||||||!.!|||||| TyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAla 13964 : TACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCC : 13905 214 : ValAlaSerTyrArgValGluAsn : 221 |||:!!.!. ::::::...::: ValSerGly***LysIleArgSer 13904 : GTGTCCGGgtaaaaaattcgatcg : 13879 vulgar: CbirOr289 133 221 . KQ414772.1 14142 13878 - 107 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13879 14142 107 - . gene_id 2 ; sequence CbirOr289 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13879 14142 . - . KQ414772.1 exonerate:protein2genome:local exon 13879 14142 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13879 14142 107 - . alignment_id 2 ; Query CbirOr289 ; Align 14143 134 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr295PC(F) Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 137 -> 214 Target range: 20556 -> 20325 138 : TyrValThrValGluLeuLeuProLeuIleLeuAspValIleSerProLeuAsnLysSer : 157 !:!:!! !||| !!! !|||:!!|||||||||:!! !:!!||||||||||||!!! PheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsnLysThr 20556 : TTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAACAAAACG : 20499 158 : ArgSerLeuLysLeuIleAlaAsnThrGluTyrPheValAsnArgGluLysTyrIleTrp : 177 |||!.!! ! !!!!:!! ! .!! ! |||!:::!!:!!! !|||:!!||| ! ! ArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMet 20498 : AGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATG : 20439 178 : ValMetLeuLeuHisGluIleThrAlaIleTyrIleArgValIleThrValCysCysThr : 197 :!!|||:!!:!!||| !!!: !!.!:!: !!!: ! !:!!! ! !!|||..! ! IleMetIleIleHisIleMetPheValValIleMetValCysValIlePheCysAlaCys 20438 : ATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGTGCTTGC : 20379 198 : SerValThrIleMetMetTyrIleLeuHisAlaCysAlaLeuPheLysVal : 214 ..!:!!!.! !:!! !:!:! !|||||||||!.!|||!!. ||| AspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaVal 20378 : GACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: CbirOr295PC(F) 137 214 . KQ414772.1 20556 20325 - 122 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20556 122 - . gene_id 1 ; sequence CbirOr295PC(F) ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20556 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20556 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20326 20556 122 - . alignment_id 1 ; Query CbirOr295PC(F) ; Align 20557 138 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr295PC(F) Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 132 -> 215 Target range: 38021 -> 37772 133 : PheAspThrLeuCysTyrValThrValGluLeuLeuProLeuIleLeuAspValIleSer : 152 ||| ! !:!! !:!..!:!!|||! !:!! !|||! !:!!||||||:!!|||||| PheCysTyrValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSer 38021 : TTTTGCTACGTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCA : 37964 153 : ProLeuAsnLysSerArgSerLeuLysLeuIleAlaAsnThrGluTyrPheValAsnArg : 172 ||| !|||:!!||||||.!!:!! ! !!!||| ! !.!! ! ||| !:!!:!!..! ProLysAsnGluSerArgGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAspGlu 37963 : CCGAAAAACGAATCGCGTGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGACGAG : 37904 173 : GluLysTyrIleTrpValMetLeuLeuHisGluIleThrAlaIleTyrIleArgValIle : 192 |||:!!:!! !!:::!!:!!:!! !||| !:!! !!.!||| !:!! ! !!.!! GluGluHisTyrTyrIleLeuMetGlyHisMetLeuCysValIleThrValValPhePhe 37903 : GAGGAACATTATTACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTC : 37844 193 : ThrValCysCysThrSerValThrIleMetMetTyrIleLeuHisAlaCysAlaLeuPhe : 212 ..! ! !! ! !..!..!! ! !|||! !:!!! !|||||||||!.!|||.!. ValTyrIleSerCysAspThrIleTyrMetSerIleValGlnHisAlaCysGlyLeuLeu 37843 : GTGTACATCTCCTGTGACACGATCTACATGAGCATCGTTCAACACGCGTGCGGATTACTG : 37784 213 : LysValAla : 215 !!.|||:!! AsnValSer 37783 : AACGTCTCT : 37773 vulgar: CbirOr295PC(F) 132 215 . KQ414772.1 38021 37772 - 109 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37773 38021 109 - . gene_id 2 ; sequence CbirOr295PC(F) ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37773 38021 . - . KQ414772.1 exonerate:protein2genome:local exon 37773 38021 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 37773 38021 109 - . alignment_id 2 ; Query CbirOr295PC(F) ; Align 38022 133 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr295PC(F) Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 132 -> 215 Target range: 24428 -> 24179 133 : PheAspThrLeuCysTyrValThrValGluLeuLeuProLeuIleLeuAspValIleSer : 152 ||| ! !:!! !!:!..!.!!|||! !:!! !|||! !:!!||||||:!!|||||| PheCysTyrValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSer 24428 : TTCTGCTACGTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCG : 24371 153 : ProLeuAsnLysSerArgSerLeuLysLeuIleAlaAsnThrGluTyrPheValAsnArg : 172 ||| !|||:!!||||||.!!:!! !!!||| ! !.!!.!.||| !|||:!!..! ProLysAsnGluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGlu 24370 : CCGAAAAACGAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAA : 24311 173 : GluLysTyrIleTrpValMetLeuLeuHisGluIleThrAlaIleTyrIleArgValIle : 192 |||:!!:!! !!:: !:!!:!! !||| !:!!:!!!.!||| !:!! ! !!.!! GluGluHisTyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePhe 24310 : GAGGAGCATTACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTC : 24251 193 : ThrValCysCysThrSerValThrIleMetMetTyrIleLeuHisAlaCysAlaLeuPhe : 212 ..! ! !! ! !..!..!! ! !|||! !:!:! !|||||||||!.!|||!!. ValTyrIleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeu 24250 : GTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTG : 24191 213 : LysValAla : 215 !!.:!!:!! AsnLeuSer 24190 : AACCTCTCT : 24180 vulgar: CbirOr295PC(F) 132 215 . KQ414772.1 24428 24179 - 106 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24180 24428 106 - . gene_id 3 ; sequence CbirOr295PC(F) ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24180 24428 . - . KQ414772.1 exonerate:protein2genome:local exon 24180 24428 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 24180 24428 106 - . alignment_id 3 ; Query CbirOr295PC(F) ; Align 24429 133 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr295PC(F) Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 132 -> 215 Target range: 29607 -> 29358 133 : PheAspThrLeuCysTyrValThrValGluLeuLeuProLeuIleLeuAspValIleSer : 152 ||| ! !:!! !:!..!:!!|||! !:!! !|||! !:!!||||||:!!|||||| PheCysTyrValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSer 29607 : TTCTGCTACGTTATATTCACCTCAGTGGCGATAACCCCTCGTGTTCTCGACCTTATTTCG : 29550 153 : ProLeuAsnLysSerArgSerLeuLysLeuIleAlaAsnThrGluTyrPheValAsnArg : 172 ||| !|||:!!||||||.!!:!! !!!||| ! !.!! ! ||| !:!!:!!..! ProLysAsnGluSerArgGlyValGlyPheIleTyrProAlaTyrTyrGlyLeuAspGlu 29549 : CCGAAAAACGAATCGCGCGGAGTGGGCTTCATTTATCCTGCATACTACGGTCTTGACGAA : 29490 173 : GluLysTyrIleTrpValMetLeuLeuHisGluIleThrAlaIleTyrIleArgValIle : 192 |||:!!:!! !!:: !:!!:!! !||| !:!!:!!!.!||| !:!! ! !!.!! GluGluHisTyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePhe 29489 : GAGGAGCATTACTACTATCTGATGGGTCACATGCTTTCCGTGATAACCGTCGTGTTTTTC : 29430 193 : ThrValCysCysThrSerValThrIleMetMetTyrIleLeuHisAlaCysAlaLeuPhe : 212 ..! ! !! ! !..!..!! ! !|||! !:!:! !|||||||||!.!|||!!. ValTyrIleSerCysAspThrIleTyrMetAsnValValGlnHisAlaCysGlyLeuLeu 29429 : GTCTACATCTCCTGTGACACGATCTATATGAATGTCGTGCAACACGCGTGTGGATTATTG : 29370 213 : LysValAla : 215 !!.|||:!! AsnValSer 29369 : AACGTCTCT : 29359 vulgar: CbirOr295PC(F) 132 215 . KQ414772.1 29607 29358 - 105 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29359 29607 105 - . gene_id 4 ; sequence CbirOr295PC(F) ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29359 29607 . - . KQ414772.1 exonerate:protein2genome:local exon 29359 29607 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 29359 29607 105 - . alignment_id 4 ; Query CbirOr295PC(F) ; Align 29608 133 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr295PC(F) Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 132 -> 215 Target range: 29622 -> 29373 133 : PheAspThrLeuCysTyrValThrValGluLeuLeuProLeuIleLeuAspValIleSer : 152 ||| ! !:!! !!:!..!.!!|||! !:!! !|||! !:!!||||||:!!|||||| PheCysTyrValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSer 29622 : TTCTGCTACGTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCG : 29565 153 : ProLeuAsnLysSerArgSerLeuLysLeuIleAlaAsnThrGluTyrPheValAsnArg : 172 ||| !|||:!!||||||.!!:!! !!!||| ! !.!!.!.||| !|||:!!..! ProLysAsnGluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGlu 29564 : CCGAAAAACGAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAA : 29505 173 : GluLysTyrIleTrpValMetLeuLeuHisGluIleThrAlaIleTyrIleArgValIle : 192 |||:!!:!! !!:: !:!!:!! !||| !:!!:!!!.!||| !:!! ! !!.!! GluGluHisTyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePhe 29504 : GAGGAGCATTACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTC : 29445 193 : ThrValCysCysThrSerValThrIleMetMetTyrIleLeuHisAlaCysAlaLeuPhe : 212 ..! ! !! ! !..!..!! ! !|||! !:!:! !|||||||||!.!|||!!. ValTyrIleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeu 29444 : GTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTG : 29385 213 : LysValAla : 215 !!.:!!:!! AsnLeuSer 29384 : AACCTCTCT : 29374 vulgar: CbirOr295PC(F) 132 215 . LHQN01017803.1 29622 29373 - 106 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29374 29622 106 - . gene_id 1 ; sequence CbirOr295PC(F) ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29374 29622 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29374 29622 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 29374 29622 106 - . alignment_id 1 ; Query CbirOr295PC(F) ; Align 29623 133 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr306 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 141 -> 213 Target range: 26207 -> 25991 142 : ValProSerLeuLeuAspIleIleIleProLeuAsnGluSerArgProSerTrpLeuPro : 161 ||| !! !!:!!|||||||||:!!!!:||||||||||||!!!||| !! !!! !!!! ! ValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheVal 26207 : GTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTC : 26150 162 : IleValAlaGluTyrPheValAspGlnGlnArgTyrPheTyrAlaIleLeuIleHisIle : 181 ! !||| ! ||||||||||||:!!.!.!:!||| !||| !|||:!! |||!!: TyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMet 26149 : TATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATG : 26090 182 : PheIleValValTyrAlaGlySerMetAlaIleAlaSerValAlaGlyMetMetLeuGly : 201 !:!:!!|||||| ! !! ! !.!.!!..!:!! !! !!.!! :!! ! TyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyr 26089 : TATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTAC : 26030 202 : TyrValLeuHisAsnCysAlaIlePheLysIleAla : 213 !|||! !||| !|||!.!:!:!!. |||||| AlaValGlnHisAlaCysGlyLeuLeuAlaIleAla 26029 : GCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCA : 25992 vulgar: CbirOr306 141 213 . LHQN01017803.1 26207 25991 - 112 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25992 26207 112 - . gene_id 1 ; sequence CbirOr306 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25992 26207 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25992 26207 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25992 26207 112 - . alignment_id 1 ; Query CbirOr306 ; Align 26208 142 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr293 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 117 -> 225 Target range: 26282 -> 25958 118 : SerIleAsnPheIleThrIleTyrGlyIleValPheCysHisPheGlyIleLeuCysTyr : 137 |||:!::::||| ! !! !:!! !! !||| ! !!. !! ! ! !:! SerLeuSerPheTyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPhe 26282 : TCTCTGTCATTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTT : 26225 138 : LeuThrLeuGlnPheLeuProLeuIleLeuAspValIleValProLeuAsnThrSerArg : 157 :!! !|||! !|||:!! !!! !|||||||||:!!:!!:!!||||||||| !!!!||| MetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArg 26224 : ATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGA : 26165 158 : SerLeuLysLeuMetAlaIleThrGluTyrPheValAsnArgGluLysTyrAlaSerAla : 177 :!!! ! !!!!:!: ! !.!! ! |||||||||:!!..!!!:|||||| !! ! ! AlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeu 26164 : GCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTG : 26105 178 : MetLeuLeuHisGluIleLeuThrValTyrThrGlyValMetThrLeuCysSerThrGly : 197 !!::!! !||| ! !|||..!||| ! ! !:!! ..!!!!|||:!! !! ! IleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAsp 26104 : ATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGAT : 26045 198 : LeuThrIleMetThrTyrIleLeuHisAlaCysAlaLeuLeuLysIleAlaSerHisArg : 217 !!.! !:!! ! !:!:! !|||||||||!.!|||||| ||||||.!! ! ! AlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***Leu 26044 : GCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTA : 25985 218 : MetLysHisAlaIleGlnGluAsp : 225 :!::!! !:!!..!|||:!! ValGlnGlyGlnLeuMetGluAsn 25984 : GTTCAAGGACAATTAATGGAAAAT : 25959 vulgar: CbirOr293 117 225 . LHQN01017803.1 26282 25958 - 122 M 108 324 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25959 26282 122 - . gene_id 1 ; sequence CbirOr293 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25959 26282 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25959 26282 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25959 26282 122 - . alignment_id 1 ; Query CbirOr293 ; Align 26283 118 324 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr289 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 133 -> 226 Target range: 26237 -> 25958 134 : CysLeuLeuCysAlaGlyIleLeuGlnPheLeuProValIleLeuAspLeuIleLeuPro : 153 ||| ! ! ! ! !|||! !|||:!! !! !|||||||||:!!:!!:!!||| CysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetPro 26237 : TGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCG : 26180 154 : LeuAsnGluSerArgProLeuHisLeuIleValPheAlaGluTyrPheIleAsnGlnGlu : 173 |||||||||!!!||| !!! ! !!!:!! ! ||| ! ||||||:!!:!!:!!!!: LeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAsp 26179 : TTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGAC : 26120 174 : GluTyrLeuTyrAlaMetLeuLeuHisGluIlePheAlaValHisLeuAlaAlaIleAla : 193 :!!|||! !||| !!!::!! !||| ! !.!!!.!||| :!! ! ! !!.! LysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerVal 26119 : AAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTT : 26060 194 : LeuCysCysThrSerThrThrIleMetSerTyrIleLeuHisGlyCysAlaLeuLeuLys : 213 !!!|||..! !..!.!!!.! !:!!! ! !:!:! !|||!.!|||!.!|||||| PheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAla 26059 : TTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCC : 26000 214 : ValAlaSerTyrArgValGluAsnAlaIleGlyGluAsp : 226 :!!|||.!!!! !|||:!!... !:!! !|||:!! IleAlaGly***LeuValGlnGlyGlnLeuMetGluAsn 25999 : ATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAAT : 25959 vulgar: CbirOr289 133 226 . LHQN01017803.1 26237 25958 - 123 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25959 26237 123 - . gene_id 1 ; sequence CbirOr289 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25959 26237 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25959 26237 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25959 26237 123 - . alignment_id 1 ; Query CbirOr289 ; Align 26238 134 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr289 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 118 -> 221 Target range: 14224 -> 13915 119 : TyrAlaArgLeuLeuThrIleIleAlaPheAlaPheSerTyrCysCysLeuLeuCysAla : 138 ||| !! !! !:!!..!! ! !:!!.!.||| !:!! ! !|||:!!:!! ! TyrPheThrTyrIleValLysTyrSerIleAlaAsnAlaIleValCysValIleLeuPhe 14224 : TATTTTACGTACATTGTCAAATATTCGATAGCGAACGCGATCGTTTGTGTCATCCTGTTC : 14167 139 : GlyIleLeuGlnPheLeuProValIleLeuAspLeuIleLeuProLeuAsnGluSerArg : 158 ! ! !! ! ! !||| !|||||||||:!!:!!|||||| !|||||||||||| ValSerThrProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArg 14166 : GTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAGAACGAGTCACGA : 14107 159 : ProLeuHisLeuIleValPheAlaGluTyrPheIleAsnGlnGluGluTyrLeuTyrAla : 178 !:!! ! !||| ! ||| ! ||||||! !:!!:!!.!.:!!||| ! ! AspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyr 14106 : GACGTAGCGTACATTTATCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTAC : 14047 179 : MetLeuLeuHisGluIlePheAlaValHisLeuAlaAlaIleAlaLeuCysCysThrSer : 198 !!::!! !||| ! ! !!.!:!!! !:!!!.! ! !!.!! ! !..! !..! IleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrValAlaCysAsp 14046 : ATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGAC : 13987 199 : ThrThrIleMetSerTyrIleLeuHisGlyCysAlaLeuLeuLysValAlaSerTyrArg : 218 |||!:! !!!:! ! !:!:! !|||||||||!.!|||||| |||:!!.!. ::: ThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly***Lys 13986 : ACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaa : 13927 219 : ValGluAsn : 221 :::...::: IleArgSer 13926 : attcgatcg : 13916 vulgar: CbirOr289 118 221 . LHQN01017803.1 14224 13915 - 108 M 103 309 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13916 14224 108 - . gene_id 2 ; sequence CbirOr289 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13916 14224 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13916 14224 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13916 14224 108 - . alignment_id 2 ; Query CbirOr289 ; Align 14225 119 309 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr311PI Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 98 -> 176 Target range: 26225 -> 25991 99 : IleIleIleLeuSerSerIleSerPheIleLeuAspAlaIleIleProLeuAsnGluSer : 118 .!!!!: !||| !!! !:!:||| ||||||||| !:!!!!:||||||||||||!!! PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThr 26225 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACG : 26168 119 : ArgProLeuTrpLeuProIleIleValGluTyrPheValAspGlnGluArgTyrPhePhe : 138 ||| !!! !! !!!! ! ! !!.! ! ||||||||||||:!!!!:!:!||| !!:! ArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyr 26167 : CGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTAC : 26108 139 : AlaIleLeuIleHisThrPheMetPheValTyrValGlyCysIleThrIleAlaAlaIle : 158 !|||:!! |||! !!:!:!: ! ||| :!! ! ! !..!.!!..!||| ! LeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCys 26107 : TTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGC : 26048 159 : AlaThrMetLeuIleAlaTyrValLeuHisAsnCysAlaIlePheGluValAla : 176 ! !.!!! ! !:!: ! !|||! !||| !|||!.!:!:!!.! :!!||| AspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla 26047 : GATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCA : 25992 vulgar: CbirOr311PI 98 176 . LHQN01017803.1 26225 25991 - 103 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25992 26225 103 - . gene_id 1 ; sequence CbirOr311PI ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25992 26225 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25992 26225 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25992 26225 103 - . alignment_id 1 ; Query CbirOr311PI ; Align 26226 99 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr307 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 137 -> 213 Target range: 26222 -> 25994 138 : IleSerLeuAlaPheAlaSerThrIleLeuAspIleIleIleProLeuAsnGluSerArg : 157 !!:!!!||| !!|||!.!||| !!||||||||||||:!!!!:||||||||||||!!!||| MetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArg 26222 : ATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGA : 26165 158 : ProLeuArgLeuProIleGluValGluTyrPheValAspGlnGlnArgTyrPheTyrAla : 177 !!! ! !!!! ! ! !!.! ! ||||||||||||:!!.!.!:!||| !||| ! AlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeu 26164 : GCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTG : 26105 178 : IleSerLeuHisMetGlyMetThrPheTyrAlaGlyMetMetIleMetThrAlaIleThr : 197 ||| ! !|||||| !:!:..! ! ! !!!: :!!.!. !||| ! ! IleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAsp 26104 : ATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGAT : 26045 198 : ThrIlePheIleAlaTyrValSerHisAsnCysAlaIlePheGluIle : 213 .!!! !!:!:!: ! !|||..!||| !|||!.!:!:!!.! ||| AlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 26044 : GCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 25995 vulgar: CbirOr307 137 213 . LHQN01017803.1 26222 25994 - 119 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25995 26222 119 - . gene_id 1 ; sequence CbirOr307 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25995 26222 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25995 26222 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25995 26222 119 - . alignment_id 1 ; Query CbirOr307 ; Align 26223 138 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr307 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 129 -> 213 Target range: 14188 -> 13936 130 : AlaThrSerValValLeuGlyValIleSerLeuAlaPheAlaSerThrIleLeuAspIle : 149 |||! ! ! !|||:!! ! !!:!:||| ! !! ! .!! !! !|||||||||||| AlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIle 14188 : GCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATT : 14131 150 : IleIleProLeuAsnGluSerArgProLeuArgLeuProIleGluValGluTyrPheVal : 169 :!!:!!||| !|||||||||||| !:!! !! ! ! ! !!.! ! ||||||..! LeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThr 14130 : TTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTATCCGGCCTATTATTTCACC : 14071 170 : AspGlnGlnArgTyrPheTyrAlaIleSerLeuHisMetGlyMetThrPheTyrAlaGly : 189 |||:!!!!.!:!||| ! !|||! ! !||||||!.! ..!.!! !!.!! ! AspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValVal 14070 : GACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTG : 14011 190 : MetMetIleMetThrAlaIleThrThrIlePheIleAlaTyrValSerHisAsnCysAla : 209 .!. :!: ..!||| ! !|||! !!:!||| ! !|||..!|||..!|||!.! PheTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGly 14010 : TTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGA : 13951 210 : IlePheGluIle : 213 :!:!!.! :!: LeuLeuAlaVal 13950 : TTGTTGGCCGTG : 13937 vulgar: CbirOr307 129 213 . LHQN01017803.1 14188 13936 - 108 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13937 14188 108 - . gene_id 2 ; sequence CbirOr307 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13937 14188 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13937 14188 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13937 14188 108 - . alignment_id 2 ; Query CbirOr307 ; Align 14189 130 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr305 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 133 Query range: 136 -> 212 Target range: 26222 -> 25994 137 : LeuSerLeuSerPheValSerProIleLeuAspValIleIleProMetAsnValSerArg : 156 :!!!!!||| !!|||||||||||||||||||||:!!:!!!!:|||:!!|||! !!!!||| MetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArg 26222 : ATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGA : 26165 157 : SerLeuArgLeuProIleValAlaGluTyrPheValAspGlnThrArgTyrPheTyrPro : 176 :!!! ! !!!! ! ! !||| ! ||||||||||||:!! !!:!||| !||| ! AlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeu 26164 : GCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTG : 26105 177 : IleMetIleHisIlePheIleValSerTyrValCysLeuMetThrLeuValAlaIleIle : 196 |||:!: |||!!:!:!:!!||| ! :!! !:!! ..!!!! !||| ! ! IleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAsp 26104 : ATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGAT : 26045 197 : AlaLeuLeuIleAlaTyrValMetHisAsnCysAlaIlePheGluIle : 212 ||| !! !:!: ! !|||...||| !|||!.!:!:!!.! ||| AlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 26044 : GCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 25995 vulgar: CbirOr305 136 212 . LHQN01017803.1 26222 25994 - 133 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25995 26222 133 - . gene_id 1 ; sequence CbirOr305 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25995 26222 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25995 26222 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25995 26222 133 - . alignment_id 1 ; Query CbirOr305 ; Align 26223 137 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr303INT Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 122 -> 201 Target range: 26198 -> 25961 123 : IleLeuAspMetIlePheProLeuAsnGluThrArgProArgGluIleHisAlaLeuThr : 142 |||||||||!!::!!.!.|||||||||||||||||| !!||| !.!! ! !! !.!! IleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAla 26198 : ATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCT : 26141 143 : GluTyrPheIleAspGluArgThrTyrPheCysProIleLeuCysHisTrpLeuIleGly : 162 ! ||||||:!!|||||| !! !||| !! ! !|||:!! ! ||| !! !:!!! ! TyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuVal 26140 : TACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTA : 26081 163 : LeuMetLeuGlyAlaTyrValValAlaValThrCysThrLeuHisLeuValTyrMetGlu : 182 :!!:!::!! ! !! !||| !!..!!.! ! !.!! !:!!:!! ! !:!!:!! ValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGln 26080 : GTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAA : 26021 183 : HisIleCysGlyLeuLeuLysValAlaAsnTyrArgIleGluHisSerLeuAspGlu : 201 ||| !|||||||||||| :!!|||...!! !:!!:!! ..!||| ||| HisAlaCysGlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGlu 26020 : CACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAA : 25962 vulgar: CbirOr303INT 122 201 . LHQN01017803.1 26198 25961 - 107 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25962 26198 107 - . gene_id 1 ; sequence CbirOr303INT ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25962 26198 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25962 26198 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25962 26198 107 - . alignment_id 1 ; Query CbirOr303INT ; Align 26199 123 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr299PN(F) Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 71 -> 143 Target range: 33735 -> 33519 72 : LeuPheGlyValPheIleThrValGlyMetPheIleThrLeuAlaValPheGlyPheTyr : 91 :!!!!...!:!! ! !:!!||| !!!:!:!||| !:!!:!!||||||..! ! ValLeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThrAla 33735 : GTTTTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCG : 33678 92 : GlnPheLeuProAspLeuLeuAspMetIleAlaProLeuAsnAspSerArgLysHisPhe : 111 ! .!!:!!||| !:!!||||||:!:|||:!!|||||||||!!:|||||| !!.!!!. ProLeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArgLeu 33677 : CCCCTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTG : 33618 112 : LeuThrPheAspAlaGluTyrPheValAspGlnLysGluTyrPheTyrProIleValThr : 131 ! !.!!!:! ! ||| ! ! !!:! !!:!!! ! ! !!:|||!:!||| !:!!||| ! TyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValValGly 33617 : TACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTGGGG : 33558 132 : HisGlyLeuThrAlaValTyrIleGlyGlyThrVal : 143 :!! ! !.!!..!:!! !!:!.!||| !||| TyrThrSerAlaCysIleGlyMetAlaGlyLeuVal 33557 : TACACCAGCGCGTGCATAGGAATGGCCGGACTCGTG : 33520 vulgar: CbirOr299PN(F) 71 143 . LHQN01017803.1 33735 33519 - 101 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33520 33735 101 - . gene_id 1 ; sequence CbirOr299PN(F) ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33520 33735 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33520 33735 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33520 33735 101 - . alignment_id 1 ; Query CbirOr299PN(F) ; Align 33736 72 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr304CTE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 129 -> 213 Target range: 26243 -> 25991 130 : ThrLeuCysPheLeuGlyLeuLeuThrLeuGlyCysValProArgIleLeuAspIleIle : 149 :!!|||||| ! ! !!!!:!! !||| !! !||| !!! !||||||||||||:!! SerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeu 26243 : TCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTT : 26186 150 : MetProLeuAsnGluSerArgProArgGlnLeuProIleIleValGluTyrPheIleAsp : 169 |||||||||||||||!!!||| !!||| !!!! ! ! !!.! ! ||||||:!!||| MetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAsp 26185 : ATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGAC : 26126 170 : GluGluThrTyrPheTyrAlaIleLeuIleHisIleAlaThrAlaIleTyrAlaGlySer : 189 |||!!:! !||| !||| !|||:!! |||!!: ! !!.!:!: ! !! ! GluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIle 26125 : GAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATC : 26066 190 : ValThrLeuAlaAlaCysAlaThrMetProIleSerTyrIleLeuHisValCysAlaMet : 209 !..!!!!..!||||||! !.!!! !:!:! ! !:!:! !|||!.!|||!.!:!! SerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeu 26065 : TCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTG : 26006 210 : PheLysIleAla : 213 !!. |||||| LeuAlaIleAla 26005 : TTGGCCATTGCA : 25992 vulgar: CbirOr304CTE 129 213 . LHQN01017803.1 26243 25991 - 128 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25992 26243 128 - . gene_id 1 ; sequence CbirOr304CTE ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25992 26243 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25992 26243 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25992 26243 128 - . alignment_id 1 ; Query CbirOr304CTE ; Align 26244 130 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr304CTE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 130 -> 213 Target range: 29622 -> 29373 131 : LeuCysPheLeuGlyLeuLeuThrLeuGlyCysValProArgIleLeuAspIleIleMet : 150 !!!|||!:!:!! !!!! !.!!:!!!.! !..!||||||:!!||||||:!!||| ! PheCysTyrValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSer 29622 : TTCTGCTACGTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCG : 29565 151 : ProLeuAsnGluSerArgProArgGlnLeuProIleIleValGluTyrPheIleAspGlu : 170 ||| !|||||||||||| ! ! !!! ! ! !!.!.!.||| !:!!|||||| ProLysAsnGluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGlu 29564 : CCGAAAAACGAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAA : 29505 171 : GluThrTyrPheTyrAlaIleLeuIleHisIleAlaThrAlaIleTyrAlaGlySerVal : 190 ||| !:!!!:!||| !:!::!! !|||!!: !:!!!.!||| !!.!! !! ! !! GluGluHisTyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePhe 29504 : GAGGAGCATTACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTC : 29445 191 : ThrLeuAlaAlaCysAlaThrMetProIleSerTyrIleLeuHisValCysAlaMetPhe : 210 ..!! ! !:!!|||! !|||!!: !!!:!:! !:!:! !|||!.!|||!.!:!:!!. ValTyrIleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeu 29444 : GTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTG : 29385 211 : LysIleAla : 213 !!.:!!:!! AsnLeuSer 29384 : AACCTCTCT : 29374 vulgar: CbirOr304CTE 130 213 . LHQN01017803.1 29622 29373 - 119 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29374 29622 119 - . gene_id 2 ; sequence CbirOr304CTE ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29374 29622 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29374 29622 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 29374 29622 119 - . alignment_id 2 ; Query CbirOr304CTE ; Align 29623 131 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr302PN Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 67 -> 156 Target range: 26261 -> 25991 68 : PheLeuThrIleIleIleSerSerCys<->IleIleTyrGlyIlePheGluAlaMetPro : 86 ||| !|||:!: !||||||! !||| !:!!!:! ! !!!. ! !:!! !! PheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSer 26261 : TTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCG : 26204 87 : ValIleLeuAspIleIleLeuProLeuAsnLysThrArgProArgGluIleHisAlaLeu : 106 !||||||||||||:!!:!!|||||||||:!!|||||| !!||| !.!! ! !! ! ProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrPro 26203 : CCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCA : 26144 107 : LeuGluTyrPheIleAspLysAspAlaTyrPhePheProIleLeuCysHisTrpLeuIle : 126 ! ! ||||||:!!|||:!!||| !||| !!:! !|||:!! ! ||| !! !:!! AlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeu 26143 : GCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTT : 26084 127 : GlyLeuIleIleGlyCysTyrThrIleIleCysValSerThrSerLeuMetIleCysVal : 146 ! !:!!:!!!!: ! !! !..!.!! !..! !..!.!!!:!! !:!! !..!||| ValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaVal 26083 : GTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTG : 26024 147 : GlnHisIleSerGlyLeuPheLysValAla : 156 |||||| !!!!||||||!!. :!!||| GlnHisAlaCysGlyLeuLeuAlaIleAla 26023 : CAACACGCTTGCGGATTGTTGGCCATTGCA : 25992 vulgar: CbirOr302PN 67 156 . LHQN01017803.1 26261 25991 - 108 M 9 27 G 0 3 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25992 26261 108 - . gene_id 1 ; sequence CbirOr302PN ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25992 26261 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25992 26261 . - . insertions 3 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25992 26261 108 - . alignment_id 1 ; Query CbirOr302PN ; Align 26262 68 27 ; Align 26232 77 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr302PN Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 62 -> 160 Target range: 14215 -> 13921 63 : TyrHisThrLysLeuPheLeuThrIleIleIleSerSerCysIleIleTyrGlyIlePhe : 82 ||| !..!|||! !! :!!.!!! ! ||| !!!! !|||:!:!:!! ! TyrIleValLysTyrSerIleAlaAsnAlaIleValCysValIleLeuPheValSerThr 14215 : TACATTGTCAAATATTCGATAGCGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACG : 14158 83 : GluAlaMetProValIleLeuAspIleIleLeuProLeuAsnLysThrArgProArgGlu : 102 !!.!! ||| !||||||||||||:!!|||||| !|||:!!:!!||| ! !! ! ProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAla 14157 : CCGGTGACACCGCATATTTTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCG : 14098 103 : IleHisAlaLeuLeuGluTyrPheIleAspLysAspAlaTyrPhePheProIleLeuCys : 122 ! ! !! ! ! ! ||||||! !|||:!! !! !||| ! ! !|||:!! TyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThr 14097 : TACATTTATCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACG : 14038 123 : HisTrpLeuIleGlyLeuIleIleGlyCysTyrThrIleIleCysValSerThrSerLeu : 142 ||| ! ! !! !:!!:!!:!:! !! !|||..! !:!!..! !..!||||||! ! HisMetAlaSerValIleLeuValValPheTyrValTyrValAlaCysAspThrSerTyr 14037 : CACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTAC : 13978 143 : MetIleCysValGlnHisIleSerGlyLeuPheLysValAlaAsnTyrArgIle : 160 !!: ! !||||||||| !!!!||||||!!. |||:!!... :::||| IleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly***LysIle 13977 : ATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaatt : 13922 vulgar: CbirOr302PN 62 160 . LHQN01017803.1 14215 13921 - 101 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13922 14215 101 - . gene_id 2 ; sequence CbirOr302PN ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13922 14215 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13922 14215 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13922 14215 101 - . alignment_id 2 ; Query CbirOr302PN ; Align 14216 63 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr296 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 134 -> 215 Target range: 457174 -> 457411 135 : ValLeuValThrValIleGlnPheLeuProAsnIleLeuAspValIleLeuProLeuA : 154 :!!:!!:!!|||..!:!:|||.!!!!!|||! :!!||||||:!!:!::!!||||||: LeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuA 457175 : CTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGA : 457232 155 : spGluProArgProArgArgLeuLeuValThrAlaGluTyrPheIleValLysThrAs : 173 !!||| !!|||||| !!..!|||! !:!!|||||||||||||||:!! !! snGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheVal------AspMe 457233 : ACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTC------GACAT : 457283 174 : nAspLysTyrTyrTyrThrArgValPheHisGluLeuValPheLeuThrMetCysAla : 192 ! |||||| :!! !! !:!! ||| :!!..!! !||| !!!:...||| tLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAla 457284 : GAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCT : 457340 193 : SerMetIlePheAlaThrAlaThrGlnLeuLeuThrPheAlaPheHisSerPheGlyM : 212 !!!! !:!! |||!.!! !:!! !|||:!!||| !!.!.!.||| !! !|||: ThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyL 457341 : ACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGAT : 457400 213 : etPheLysIle : 215 !!||||||:!! euPheLysLeu 457401 : TGTTCAAGCTT : 457411 vulgar: CbirOr296 134 215 . KQ414815.1 457174 457411 + 126 M 35 105 G 2 0 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457175 457411 126 + . gene_id 1 ; sequence CbirOr296 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457175 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457175 457411 . + . insertions 0 ; deletions 2 KQ414815.1 exonerate:protein2genome:local similarity 457175 457411 126 + . alignment_id 1 ; Query CbirOr296 ; Align 457175 135 105 ; Align 457280 172 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr296 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 132 -> 215 Target range: 464594 -> 464840 133 : IleLeuValLeuValThrValIleGlnPheLeuProAsnIleLeuAspValIleLeuP : 152 :!!:!!:!!!!!:!! !:!!:!!:!! ! ||||||:!!||||||||||||:!! !| ValIleLeuPheIleCysLeuLeuGluValLeuProAspIleLeuAspValValAlaP 464595 : GTTATACTGTTCATCTGTTTACTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGC : 464652 153 : roLeuAspGluProArgProArgArgLeuLeuValThrAlaGluTyrPheIleValLy : 171 |||||:!!||| !!||| !!!.!!:!! !|||:!!|||||||||!:!||||||..! ! roLeuAsnGluSerArgSerHisGlnTyrLeuIleThrAlaGluPhePheIleThrAs 464653 : CCCTCAATGAATCTCGTTCTCATCAATACTTAATTACCGCGGAATTTTTCATCACTGA : 464709 172 : sThrAsnAspLysTyrTyrTyrThrArgValPheHisGluLeuValPheLeuThrMet : 190 !:!::: !!.||| ! ||| !!||| ! !!::!!..! |||! !||| pSerSerProAsnTyrIleValThrCysValGlyThrAspIleThr---LeuIleMet 464710 : TAGTTCGCCGAATTATATCGTAACTTGTGTTGGTACGGATATTACT---CTTATCATG : 464763 191 : CysAlaSerMetIlePheAlaThrAlaThrGlnLeuLeuThrPheAlaPheHisSerP : 210 ! !.!!!!! |||.!!|||:!!! !||| !!!! !!!. ! |||! !! GlyValThrThrIleIleAlaSerGluThrPheThrPheLeuLeuLeuGlnHisIleC 464764 : GGAGTCACGACAATAATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGCAACATATCT : 464823 211 : heGlyMetPheLysIle : 215 !!.!|||||||||||| ysAlaMetPheLysIle 464824 : GCGCAATGTTCAAAATC : 464840 vulgar: CbirOr296 132 215 . KQ414815.1 464594 464840 + 123 M 54 162 G 1 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464595 464840 123 + . gene_id 2 ; sequence CbirOr296 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464595 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464595 464840 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 464595 464840 123 + . alignment_id 2 ; Query CbirOr296 ; Align 464595 133 162 ; Align 464757 188 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr293 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 193 Query range: 88 -> 213 Target range: 456822 -> 457411 89 : ValLysGlnLeuIleGlyGlnValGlyAspAspLeuAsnLeuLeuGlnAspLysSerG : 108 :!!::!:!!:!! !! !.!.:!!!.!||||||! !!!.! !|||:!!:!!! !..!| IleArgGluIleTyrAspAsnIleAlaAspAspTrpLysSerLeuLysAsnMetGluG 456823 : ATACGGGAGATTTACGACAATATCGCTGACGATTGGAAATCATTGAAGAACATGGAAG : 456880 109 : luIleAspIleIleLysLysTyrAlaAspSerIleAsnPheIleThrIleTyrGlyIl : 127 |||||!::||||||:::|||||||||:!!.!! !!.. .!!|||:!! ! luIleGluIleIleArgLysTyrAlaAsnGlyGlyArgArgPheThrLeuAlaIleAl 456881 : AAATCGagattattcgaaaatatgcGAACGGTGGCAGGAGATTTACACTTGCAATAGC : 456937 128 : e{V} >>>> Target Intron 1 >>>> {al}PheCysHisPheGlyIleLeu : 135 !{:} 214 bp {!!}! ! !:!!! !||| !||| a{I}++ ++{le}SerThrTyrCysGlyAlaLeu 456938 : A{A}gt.........................ag{TT}TCTACTTATTGTGGCGCACTG : 457175 136 : CysTyrLeuThrLeuGlnPheLeuProLeuIleLeuAspValIleValProLeuAsnT : 155 ! ! !|||||||||.!!!!!|||:!!:!!||||||:!!:!:|||||||||||| ValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnG 457176 : GTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACG : 457235 156 : hrSerArgSerLeuLysLeuMetAlaIleThrGluTyrPheValAsnArgGluLysTy : 174 !|||||| !!! !:!!||| !! !.!!||||||||||||:!!! !:!!||||| luSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTy 457236 : AATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTA : 457292 175 : rAlaSerAlaMetLeuLeuHisGluIleLeuThrValTyrThrGlyValMetThrLeu : 193 | ! ! !!!::!! !||| ||| ! !:!! ! !!.!!.!! |||||| rMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeu 457293 : TATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTA : 457349 194 : CysSerThrGlyLeuThrIleMetThrTyrIleLeuHisAlaCysAlaLeuLeuLysI : 213 :!!!.!! !! ! !:!!!!:||| !!:!!||||||!.!|||!.!|||!!!|||: ThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysL 457350 : ACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGC : 457409 214 : le : 213 !! eu 457410 : TT : 457411 vulgar: CbirOr293 88 213 . KQ414815.1 456822 457411 + 193 M 39 117 S 0 1 5 0 2 I 0 210 3 0 2 S 1 2 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 456823 457411 193 + . gene_id 1 ; sequence CbirOr293 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 456823 456940 . + . KQ414815.1 exonerate:protein2genome:local exon 456823 456940 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 456941 456942 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 456941 457154 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457153 457154 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457155 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457155 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 456823 457411 193 + . alignment_id 1 ; Query CbirOr293 ; Align 456823 89 117 ; Align 457157 129 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr293 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 163 Query range: 132 -> 317 Target range: 481992 -> 483090 133 : GlyIleLeuCysTyrLeuThrLeuGlnPheLeuProLeuIleLeuAspValIleValP : 152 ..!:!:||| :!! !! !!!..!.! ! !!!!:!!|||||||||||||||| SerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValP 481993 : TCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTC : 482050 153 : roLeuAsnThrSerArgSerLeuLysLeuMetAlaIleThrGluTyrPheValAsnAr : 171 |||||||| !!!!|||!!!! !:!!!!! !.! !! !|||||||||:!!:!!!: roLeuAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGl 482051 : CTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCA : 482107 172 : gGluLysTyrAlaSerAlaMetLeuLeuHisGluIleLeuThrValTyrThrGlyVal : 190 !:!!||||||:!! ! !!!: !!!!|||:!! !!!:!! !! !..!! !!.! nGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAla 482108 : GCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCA : 482164 191 : MetThrLeuCysSerThrGlyLeuThrIleMetThrTyrIleLeuHisAlaCysAlaL : 210 ! !! !:!! !.!!! !! ! ! !|||:!:! !!:::!! !||||||...::!| ThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerL 482165 : ACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCT : 482224 211 : euLeuLysIleAla{Se} >>>> Target Intron 1 >>>> {r}HisArgMe : 218 ||!!!! :!!!.!{||} 430 bp {|} !!.! euPheThrLeuVal{Se}++ ++{r}AlaAsnCy 482225 : TGTTCACCCTTGTA{AG}gt.........................ag{C}GCCAATTG : 482678 219 : tLysHisAlaIleGlnGluAspValLeuAlaMetSerAsnProValLysGluTyrLeu : 237 |||!!. !:!: !.!.! !|||:!!||| !!!!!. !!:!! ! ! ! ! sLysGlnAsnLeuValAsnAlaValValAlaHisArgLysAlaIleTrpLeuValThr 482679 : TAAACAGAACTTGGTGAACGCTGTGGTTGCACACAGAAAAGCAATCTGGTTAGTTACA : 482735 238 : LeuTyrGlnLysIleValAspIleValPheIle<->HisArgArgValMetGlnPheI : 256 :!!! .!. :::... ... !||| ||| !!.! ! ::!|||: Ile***AspLeuLeuThrIlePheTyrSerIleAspHisValHisPro***ArgPheV 482736 : ATATGAGATTtacttacaattttctactcCATTGATCATGTTCATCCTTAAAGGTTTG : 482795 257 : leSerPheSerValSerSerPheValValSerPheAlaLeuLeuLeuIlePheGlyVa : 275 !!..! !! ! !..! !!!:!||| !!|||!:!|||:!!:!!|||:!:|||||||| alAspHisLeuLysAspArgTyrValPheSerTyrAlaIleValLeuLeuPheGlyVa 482796 : TAGACCATTTAAAAGACCGATACGTATTCTCTTATGCTATTGTTCTTTTGTTCGGTGT : 482852 276 : lIleSerLeuSerLeuAsnLeuPheArg >>>> Target Intron 2 >>>> L : 285 |:!!|||||||||:!!||||||||| ! 110 bp | lValSerLeuSerIleAsnLeuPheAla++ ++L 482853 : TGTCTCTCTCAGCATTAACCTGTTCGCCgt.........................agC : 482992 286 : euLeuGlnLeuMetThrValThrTyrAspIleGlyGluIleSerValIlePheLeuLe : 304 ||||||||! !!!: !:!!:!! ! ! ||| !!!:! !:!! ! !!|||!! euLeuGlnSerIlePheLeuSerLysLysIleGlnAspThrLeuIleCysValLeuPh 482993 : TGTTGCAATCGATTTTTCTATCGAAGAAAATCCAAGACACGCTAATCTGTGTTCTGTT : 483049 305 : uValThrLeuHisIleAsnTyrMetPheAlaValAsnTyr : 317 !:!!..!! !.!.:!: ||||||||| !:!!|||||| eIleValSerGluLeuAlaTyrMetPheTyrMetAsnTyr 483050 : CATCGTTTCCGAGCTGGCGTACATGTTTTACATGAACTAC : 483090 vulgar: CbirOr293 132 317 . KQ414815.1 481992 483090 + 163 M 82 246 S 0 2 5 0 2 I 0 426 3 0 2 S 1 1 M 33 99 G 0 3 M 36 108 5 0 2 I 0 106 3 0 2 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481993 483090 163 + . gene_id 2 ; sequence CbirOr293 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 481993 482240 . + . KQ414815.1 exonerate:protein2genome:local exon 481993 482240 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 482241 482242 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 482241 482670 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 482669 482670 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 482671 482881 . + . KQ414815.1 exonerate:protein2genome:local exon 482671 482881 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 482882 482883 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 482882 482991 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 482990 482991 . + . intron_id 1 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 482992 483090 . + . KQ414815.1 exonerate:protein2genome:local exon 482992 483090 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481993 483090 163 + . alignment_id 2 ; Query CbirOr293 ; Align 481993 133 246 ; Align 482672 216 99 ; Align 482774 249 108 ; Align 482992 285 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr293 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 333 -> 392 Target range: 445817 -> 446067 334 : TyrAsnGlyLeuTrpTyrAlaAlaProLeuArgThrGlnLysLeuLeuLeuPheIleM : 353 ||||||..! !||||||..!!.!||||||!!!.!!|||||||||||||||||||||| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 354 : etGlnLysThrThrValLysValThrLeuIleCysGlyGlyIlePheValAlaSerLe : 372 ||..!|||!:!|||:!! ! !! !:!!! ! !..!|||||||||!.! !!!!!! etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 373 : uGluGlyPheValThr >>>> Target Intron 1 >>>> LeuValAsnAlaA : 382 !:!!|||||| !:!! 73 bp :!!:!!!:!.!!: rLysGlyPheSerSer++ ++MetIleSerThrS 445933 : CAAAGGTTTTTCCTCGgt.........................agATGATAAGCACTT : 446035 383 : laValSerTyrPheThrValIleTyrSerThr : 392 !! !!|||||| !!|||!.!|||||||||||| erPheSerTyrValThrAlaIleTyrSerThr 446036 : CTTTCTCGTATGTCACAGCGATATATTCGACT : 446067 vulgar: CbirOr293 333 392 . KQ414815.1 445817 446067 + 142 M 44 132 5 0 2 I 0 69 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 446067 142 + . gene_id 3 ; sequence CbirOr293 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 445818 445949 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445949 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445950 445951 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445950 446022 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 446021 446022 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 446023 446067 . + . KQ414815.1 exonerate:protein2genome:local exon 446023 446067 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 446067 142 + . alignment_id 3 ; Query CbirOr293 ; Align 445818 334 132 ; Align 446023 378 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr293 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 145 -> 213 Target range: 485722 -> 485926 146 : IleLeuAspValIleValProLeuAsnThrSerArgSerLeuLysLeuMetAlaIleT : 165 |||||||||:!!:!::!!||||||||| !!!!||| !!! !! !:!! !! !: IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 166 : hrGluTyrPheValAsnArgGluLysTyrAlaSerAlaMetLeuLeuHisGluIleLe : 184 !!|||:!!||||||:!!!:!:!!|||||| !! ! !!!!: ! !|||! :!!|| erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 185 : uThrValTyrThrGlyValMetThrLeuCysSerThrGlyLeuThrIleMetThrTyr : 203 | !||| !! !|||!.!!!:..!||| !|||||| ::: ||||||.!! uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 204 : IleLeuHisAlaCysAlaLeuLeuLysIle : 213 |||! !|||.!!|||!.!|||! !! !||| IleGlnHisThrCysGlyLeuTyrThrIle 485895 : ATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr293 145 213 . KQ414815.1 485722 485926 + 127 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485926 127 + . gene_id 4 ; sequence CbirOr293 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485926 127 + . alignment_id 4 ; Query CbirOr293 ; Align 485723 146 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr293 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 333 -> 379 Target range: 441705 -> 441843 334 : TyrAsnGlyLeuTrpTyrAlaAlaProLeuArgThrGlnLysLeuLeuLeuPheIleM : 353 ||||||..! !||||||..!!.!||||||!!!.!!|||||||||||||||||||||| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 354 : etGlnLysThrThrValLysValThrLeuIleCysGlyGlyIlePheValAlaSerLe : 372 ||..!|||!:!|||:!! ! !! !:!!! ! !..!|||||||||!.! !!!!!! etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 373 : uGluGlyPheValThrLeuVal : 379 !:!!|||||| !:!!:!!:!! rLysGlyPheSerSerValIle 441821 : CAAAGGTTTTTCCTCGGTAATT : 441843 vulgar: CbirOr293 333 379 . KQ414815.1 441705 441843 + 115 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441843 115 + . gene_id 5 ; sequence CbirOr293 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441706 441843 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441843 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441843 115 + . alignment_id 5 ; Query CbirOr293 ; Align 441706 334 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr293 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 133 -> 220 Target range: 471570 -> 471831 134 : IleLeuCysTyrLeuThrLeuGlnPheLeuProLeuIleLeuAspValIleValProL : 153 :!!:!! ! !:!!! !|||....!.! !|||||||||||||||:!!|||:!!|||| LeuIleThrSerValIleLeuSerMetSerProLeuIleLeuAspIleIleIleProL 471571 : CTCATTACTAGTGTAATACTGTCCATGTCGCCTCTTATTCTCGATATTATAATACCTC : 471628 154 : euAsnThrSerArgSerLeuLysLeuMetAlaIleThrGluTyrPheValAsnArgGl : 172 |||||||||||||| !!! ! ! !!! !! !!!:!:!.!! !|||!:!|| euAsnThrSerArgProArgTyrPheProPheThrPheAspPheIleProAsnGlnGl 471629 : TGAACACGTCACGTCCACGTTACTTTCCATTTACGTTCGATTTCATTCCCAATCAAGA : 471685 173 : uLysTyrAlaSerAlaMetLeuLeuHisGluIleLeuThrValTyrThrGlyValMet : 191 |:!!||| !! ! !!!!: !:!! !... !:!! ! ! ! !|||:!! uGluTyrPhe***ProIleThrIlePheSerGlyIleLeuCysIleCysGlyLeuAla 471686 : GGAATACTTCTAACCGATTACTATCTTTTCTGGCATATTGTGCATTTGTGGATTAGCA : 471742 192 : ThrLeuCysSerThrGlyLeuThrIleMetThrTyrIleLeuHisAlaCysAlaLeuL : 211 .!!:!! |||!:!! ! ! !:!!|||! ! !!:!!||||||!.! !!!.!|||! AlaMetIleSerSerGluGlyLeuLeuMetMetAsnValLeuHisValArgGlyLeuT 471743 : GCAATGATAAGTAGCGAGGGTCTGCTTATGATGAATGTTTTACACGTACGTGGATTGT : 471802 212 : euLysIleAlaSerHisArgMetLysHis : 220 !!!.||||||!!! !:!: !||| yrAsnIleAlaThr***ValLeuLeuHis 471803 : ATAACATCGCTACGTGAGTACTATTACAT : 471831 vulgar: CbirOr293 133 220 . KQ414815.1 471570 471831 + 102 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471571 471831 102 + . gene_id 6 ; sequence CbirOr293 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471571 471831 . + . KQ414815.1 exonerate:protein2genome:local exon 471571 471831 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471571 471831 102 + . alignment_id 6 ; Query CbirOr293 ; Align 471571 134 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr290PSE(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 88 -> 213 Target range: 456822 -> 457411 89 : ValLysArgLeuIleGluGlnIleGlyAsnAspLeuAspLeuLeuLysGlyLysPheG : 108 :!!::!..!:!! !!!:.!.|||!.!:!!|||! ! ! ! !||||||..!! ! | IleArgGluIleTyrAspAsnIleAlaAspAspTrpLysSerLeuLysAsnMetGluG 456823 : ATACGGGAGATTTACGACAATATCGCTGACGATTGGAAATCATTGAAGAACATGGAAG : 456880 109 : luPheAspIleIleLysLysTyrAlaAspAsnIleArgIleIleThrIleLeuAlaMe : 127 ||.!!!::||||||:::|||||||||:!!..! !|||! !.!!|||:!! ! ! luIleGluIleIleArgLysTyrAlaAsnGlyGlyArgArgPheThrLeuAlaIleAl 456881 : AAATCGagattattcgaaaatatgcGAACGGTGGCAGGAGATTTACACTTGCAATAGC : 456937 128 : t{G} >>>> Target Intron 1 >>>> {lu}PheTyrLysPheGlyIleSer : 135 { } 214 bp { }! ! ! ! ! !||| ! ! a{I}++ ++{le}SerThrTyrCysGlyAlaLeu 456938 : A{A}gt.........................ag{TT}TCTACTTATTGTGGCGCACTG : 457175 136 : CysTyrLeuThrPheGlnLeuLeuProLeuIleLeuAspValIleValProLeuAsnV : 155 ! ! !|||!!.||||||!!!|||:!!:!!||||||:!!:!:||||||||||||! ValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnG 457176 : GTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACG : 457235 156 : alSerArgSerLeuLysLeuIleAlaIleThrGluTyrPheLeuAsnArgGluLysTy : 174 !|||||| !!! !:!!||| ! !! !.!!|||||||||:!!:!!! !:!!||||| luSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTy 457236 : AATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTA : 457292 175 : rValCysValMetLeuLeuHisGluMetLeuThrValTyrIleGlyValIleThrAla : 193 |:!! ! !!!::!! !||| !!: ! !:!! |||!.!!.!! !||| ! rMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeu 457293 : TATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTA : 457349 194 : CysSerThrGlyLeuIleIleMetThrTyrIleLeuHisAlaCysAlaLeuPheLysI : 213 :!!!.!! !! !:!!:!!!!:||| !!:!!||||||!.!|||!.!|||||||||: ThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysL 457350 : ACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGC : 457409 214 : le : 213 !! eu 457410 : TT : 457411 vulgar: CbirOr290PSE(F) 88 213 . KQ414815.1 456822 457411 + 180 M 39 117 S 0 1 5 0 2 I 0 210 3 0 2 S 1 2 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 456823 457411 180 + . gene_id 1 ; sequence CbirOr290PSE(F) ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 456823 456940 . + . KQ414815.1 exonerate:protein2genome:local exon 456823 456940 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 456941 456942 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 456941 457154 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457153 457154 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457155 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457155 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 456823 457411 180 + . alignment_id 1 ; Query CbirOr290PSE(F) ; Align 456823 89 117 ; Align 457157 129 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr290PSE(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 145 -> 213 Target range: 485722 -> 485926 146 : IleLeuAspValIleValProLeuAsnValSerArgSerLeuLysLeuIleAlaIleT : 165 |||||||||:!!:!::!!||||||||| !!!!||| !!! !! !:!! ! !! !: IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 166 : hrGluTyrPheLeuAsnArgGluLysTyrValCysValMetLeuLeuHisGluMetLe : 184 !!|||:!!|||:!!:!!!:!:!!|||||| !!! ! !!!: ! !|||! :!:|| erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 185 : uThrValTyrIleGlyValIleThrAlaCysSerThrGlyLeuIleIleMetThrTyr : 203 | !||| !||||||!.!|||..! ! !|||||| ::::::||||||.!! uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 204 : IleLeuHisAlaCysAlaLeuPheLysIle : 213 |||! !|||.!!|||!.!|||!:!! !||| IleGlnHisThrCysGlyLeuTyrThrIle 485895 : ATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr290PSE(F) 145 213 . KQ414815.1 485722 485926 + 132 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485926 132 + . gene_id 2 ; sequence CbirOr290PSE(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485926 132 + . alignment_id 2 ; Query CbirOr290PSE(F) ; Align 485723 146 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr290PSE(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 144 -> 212 Target range: 467686 -> 467890 145 : LeuIleLeuAspValIleValProLeuAsnValSerArgSerLeuLysLeuIleAlaI : 164 :::|||...:::::::::..! !!|||||||||||||||..!:!!:!!||| !||| IleIlePheAsnIleValThrSerLeuAsnValSerArgGluIleGluLeuProAlaA 467687 : ataattttcaatattgtaaCATCGTTGAACGTATCACGTGAGATTGAATTACCTGCTG : 467744 165 : leThrGluTyrPheLeuAsnArgGluLysTyrValCysValMetLeuLeuHisGluMe : 183 ! !||||||||| !:!!..!...|||||| ! !:!!! |||||||||! !:! spLeuGluTyrPheThrAspGluSerLysTyrTyrProIleLysLeuLeuHisValVa 467745 : ATCTTGAGTACTTTACAGACGAAAGCAAGTATTATCCTATTAAACTGTTACATGTGGT : 467801 184 : tLeuThrValTyrIleGlyValIleThrAlaCysSerThrGlyLeuIleIleMetThr : 202 : ! !!.! !! !||||||! ..!!.! !! !! !! ! !! :!::!!! ! lSerHisAlaIleThrGlyValThrValValIlePheIleAspSerThrLeuLeuIle 467802 : TAGTCATGCTATCACTGGAGTGACGGTTGTGATTTTCATTGATAGTACGTTGTTGATA : 467858 203 : TyrIleLeuHisAlaCysAlaLeuPheLys : 212 !:!:!!! !:!!:!!||||||||||||||| PheLeuGlnTyrSerCysAlaLeuPheLys 467859 : TTCCTCCAATATTCTTGTGCGCTCTTCAAA : 467890 vulgar: CbirOr290PSE(F) 144 212 . KQ414815.1 467686 467890 + 114 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 467687 467890 114 + . gene_id 3 ; sequence CbirOr290PSE(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 467687 467890 . + . KQ414815.1 exonerate:protein2genome:local exon 467687 467890 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 467687 467890 114 + . alignment_id 3 ; Query CbirOr290PSE(F) ; Align 467687 145 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr290PSE(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 333 -> 379 Target range: 441705 -> 441843 334 : TyrAspGlyLeuTrpTyrAlaAlaProLeuArgThrGlnLysLeuLeuLeuPheIleM : 353 |||:!!..! !||||||..!!.!||||||!!!.!!|||||||||||||||||||||| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 354 : etGlnLysThrThrValLysValThrLeuIleCysGlyGlyIlePheValAlaSerLe : 372 ||..!|||!:!|||:!! ! !! !:!!! ! !..!|||||||||!.! !!!!!! etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 373 : uGluGlyPheValThrLeuVal : 379 !:!!|||||| !:!!:!!:!! rLysGlyPheSerSerValIle 441821 : CAAAGGTTTTTCCTCGGTAATT : 441843 vulgar: CbirOr290PSE(F) 333 379 . KQ414815.1 441705 441843 + 110 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441843 110 + . gene_id 4 ; sequence CbirOr290PSE(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441706 441843 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441843 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441843 110 + . alignment_id 4 ; Query CbirOr290PSE(F) ; Align 441706 334 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr290PSE(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 333 -> 379 Target range: 445817 -> 445955 334 : TyrAspGlyLeuTrpTyrAlaAlaProLeuArgThrGlnLysLeuLeuLeuPheIleM : 353 |||:!!..! !||||||..!!.!||||||!!!.!!|||||||||||||||||||||| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 354 : etGlnLysThrThrValLysValThrLeuIleCysGlyGlyIlePheValAlaSerLe : 372 ||..!|||!:!|||:!! ! !! !:!!! ! !..!|||||||||!.! !!!!!! etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 373 : uGluGlyPheValThrLeuVal : 379 !:!!|||||| !:!!:!!:!! rLysGlyPheSerSerValIle 445933 : CAAAGGTTTTTCCTCGGTAATT : 445955 vulgar: CbirOr290PSE(F) 333 379 . KQ414815.1 445817 445955 + 110 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 445955 110 + . gene_id 5 ; sequence CbirOr290PSE(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445818 445955 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445955 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 445955 110 + . alignment_id 5 ; Query CbirOr290PSE(F) ; Align 445818 334 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr290PSE(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 144 -> 213 Target range: 482028 -> 482235 145 : LeuIleLeuAspValIleValProLeuAsnValSerArgSerLeuLysLeuIleAlaI : 164 !!!:!!||||||||||||||||||||||||! !!!!|||!!!! !:!!!!! !!.! PheValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValS 482029 : TTCGTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTAT : 482086 165 : leThrGluTyrPheLeuAsnArgGluLysTyrValCysValMetLeuLeuHisGluMe : 183 !! !|||||||||:!!:!!!:!:!!|||||| ! ! !!!!: !!!!|||:!! erMetGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTr 482087 : CAATGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTG : 482143 184 : tLeuThrValTyrIleGlyValIleThrAlaCysSerThrGlyLeuIleIleMetThr : 202 !!!!:!! !! !:!!! !!.!! ! ! ! !.!!! !! ! !:!:|||:!:! ! pPheSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMet 482144 : GTTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATG : 482200 203 : TyrIleLeuHisAlaCysAlaLeuPheLysIle : 213 !:::!! !||||||...::!||||||! :!! TrpLeuGluHisAlaAlaSerLeuPheThrLeu 482201 : TGGCTTGAACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: CbirOr290PSE(F) 144 213 . KQ414815.1 482028 482235 + 102 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482029 482235 102 + . gene_id 6 ; sequence CbirOr290PSE(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482029 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 482029 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482029 482235 102 + . alignment_id 6 ; Query CbirOr290PSE(F) ; Align 482029 145 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr312 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 176 Query range: 125 -> 213 Target range: 457147 -> 457411 126 : LeuThrIleLeuGlySerLeuGlyThrLeuThrCysPhePheLeuProPheAlaProS : 145 :!!|||:!!! ! !! !! !|||.!!|||..! ! ! |||! !.!! !|||! IleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheProI 457148 : ATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGA : 457205 146 : erIleLeuAspIlePheMetProLeuAsnValSerArgProArgGlnLeuLeuPhePr : 164 !:!!||||||||| ! :!:|||||||||! !||||||||| !!:!!|||! !.!! ! leLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrLeuTh 457206 : TATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTAC : 457262 165 : oGlyGluTyrPheValAspGlnGluLysTyrPheTyrAlaIleTrpLeuHisLeuAsp : 183 !!.!|||||||||||||||..!:!!||||||.!.:!! !||| !|||:!! ! rAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIle 457263 : AGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATC : 457319 184 : IleThrLeuSerLeuValValThrThrLeuIleGlyThrGluSerLeuTyrIleIleT : 203 ! !||| !:!!!.!!.!|||||||||! !!.!!.!||||||||| !|||! ThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrA 457320 : ACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGA : 457379 204 : yrIleGlnHisValCysGlyMetPheGlnVal : 213 !!:!!! !||||||||||||:!!|||:!!:!! snValLeuHisValCysGlyLeuPheLysLeu 457380 : ACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr312 125 213 . KQ414815.1 457147 457411 + 176 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457148 457411 176 + . gene_id 1 ; sequence CbirOr312 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457148 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457148 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457148 457411 176 + . alignment_id 1 ; Query CbirOr312 ; Align 457148 126 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr312 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 141 -> 213 Target range: 485710 -> 485926 142 : PheAlaProSerIleLeuAspIlePheMetProLeuAsnValSerArgProArgGlnL : 161 ||| ! !|||||||||||||||!!.!!:||||||||| !!!!||||||||| !: PheAsnAsnSerIleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrI 485711 : TTTAACAACAGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGA : 485768 162 : euLeuPheProGlyGluTyrPheValAspGlnGluLysTyrPheTyrAlaIleTrpLe : 180 !!! !.!. !..!|||:!!||||||||||||:!!|||||||||||| !!||| leProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAl 485769 : TTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGC : 485825 181 : uHisLeuAspIleThrLeuSerLeuValValThrThrLeuIleGlyThrGluSerLeu : 199 !|||:!!! !:!! !:!!! !:!!! !!.!! !..!|||:!!.!!|||||| ||| aHisValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeu 485826 : ACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatatta : 485882 200 : TyrIleIleTyrIleGlnHisValCysGlyMetPheGlnVal : 213 ::: |||||||||..!||||||:!!!:! !:!! IleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIle 485883 : attatggCGATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr312 141 213 . KQ414815.1 485710 485926 + 167 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485711 485926 167 + . gene_id 2 ; sequence CbirOr312 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485711 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485711 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485711 485926 167 + . alignment_id 2 ; Query CbirOr312 ; Align 485711 142 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr312 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 125 -> 284 Target range: 448031 -> 449058 126 : LeuThrIleLeuGlySerLeuGlyThrLeuThrCysPhePheLeuProPheAlaProS : 145 ::::::::::!! !:!!|||..! !:!!!:!! ! !!!.:!! !|||!.! ! IleSerValValPheAlaLeuSerLeuIleSerPheThrLeuValGluPheValValH 448032 : atttcagtGGTGTTTGCCTTGTCTTTAATTAGCTTTACCTTGGTTGAGTTCGTGGTAc : 448089 146 : erIleLeuAspIlePheMetProLeuAsnValSerArgProArgGlnLeuLeuPhePr : 164 ...|||||||||...||||||:!!|||||||||! !! !!.!:!!|||! !|||! isPheLeuAspIleLeuMetProMetAsnValSerThrArgHisGluLeuProPheLe 448090 : attttctcgatattttaATGCCAATGAACGTATCTACACGGCACGAGCTACCCTTCCT : 448146 165 : oGlyGluTyrPheValAspGlnGluLysTyrPheTyrAlaIleTrpLeuHisLeuAsp : 183 ! !:!!! !||| !||||||!!:|||!:!|||:!! !|||! :!! !||| ! uIleGlnCysPheCysAspGlnAspLysPhePheHisTyrIleLeuValPheLeuIle 448147 : AATTCAATGTTTCTGTGATCAAGATAAATTCTTCCACTATATATTAGTTTTCTTGATC : 448203 184 : IleThrLeuSerLeuValValThrThrLeuIleGlyThrGluSerLeuTyrIleIleT : 203 :!! ! !! !|||! !! !!:!..!:!!:!!!.!||| !!!! !|||:!:|||! ValLeuThrIleLeuGlyGlySerValValLeuAlaThrThrThrThrTyrLeuIleP 448204 : GTTCTCACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAACGACTTACTTGATAT : 448263 204 : yrIleGlnHisValCysGlyMetPheGlnValAla{Se} >>>> Target Intro : 215 :!! !|||||| !||||||:!!|||:!!:!!|||{.!} 550 bp heSerGlnHisCysCysGlyLeuPheLysIleAla{Gl}++ 448264 : TCAGTCAACATTGTTGTGGATTGTTCAAAATTGCA{GG}gt................. : 448303 216 : n 1 >>>> {r}TyrArgLeuTyrGlnAlaPheAspLysLysValLeuGlnAlaTyr : 230 {!} !:! ! ||||||::: ... +-{y}MetGlnSerValTyrLeuHisLysLysLysIleHisSerArgIle 448304 : ........aa{A}ATGCAAAGTgtttatttgcataaaaaaaaaattcacagcagaata : 448894 231 : AlaProGluLysArgAlaIleIleValTyrArgLysIleIleGluAlaIleTyrIleH : 250 ||| ::: ::: !!:! ! ! !.!.!..... LysLysGluIleLysLeuArgLeuProPheLeuAsp***HisAsnValPheValGluP 448895 : aaaaaagaaataaaattaagattGCCATTCTTAGACTAGCATAACGtgttcgtcgaat : 448954 251 : isAsnArgThrIleGluPhePheGluPheLeuTrpSerThrLeuMetValSerTyrSe : 269 ! !..!|||.!!!!: !:!! !!!!|||!!!..!:!!||||||!! hePheCysCys***ArgPheLeuAspGlyIleLysThrThrPheGlnMetSerTyrTh 448955 : ttttctgttGTTAAAGGTTTCTCGATGGCATAAAGACTACTTTTCAGATGTCCTACAC : 449011 270 : rIleLeuLeuThrIleGlyIleThrSerLeuValMetAsnLeuPhe : 284 !||||||:!!! !:!!!.!:!!! !||||||:!!:!:||||||||| rIleLeuValIleLeuAlaValIleSerLeuIleLeuAsnLeuPhe 449012 : GATTTTGGTTATCCTCGCCGTAATTTCTCTCATTCTTAATCTATTT : 449058 vulgar: CbirOr312 125 284 . KQ414815.1 448031 449058 + 165 M 89 267 S 0 2 5 0 2 I 0 546 3 0 2 S 1 1 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448032 449058 165 + . gene_id 3 ; sequence CbirOr312 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 448032 448300 . + . KQ414815.1 exonerate:protein2genome:local exon 448032 448300 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 448301 448302 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 448301 448850 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 448849 448850 . + . intron_id 0 ; splice_site "AA" KQ414815.1 exonerate:protein2genome:local cds 448851 449058 . + . KQ414815.1 exonerate:protein2genome:local exon 448851 449058 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448032 449058 165 + . alignment_id 3 ; Query CbirOr312 ; Align 448032 126 267 ; Align 448852 216 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr312 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 0 -> 89 Target range: 447014 -> 447701 1 : MetAsnPheLeuGlyHisGluTyrTyrLysLeuAsnArgArgLeuLeuLeuLeuValG : 20 |||:!!|||||||||:!!|||||||||!..||||||!:!!:!|||||| !||||||| MetAspPheLeuGlyTyrGluTyrTyrSerLeuAsnGlnGlnLeuLeuThrLeuValG 447015 : ATGGACTTCCTCGGGTACGAGTACTATAGCCTCAATCAACAGCTTTTGACGTTGGTCG : 447072 21 : lyLeuTrpProTyrGluHisSerValPheLysTyrCysGlnMetIleLeuCysAsnIl : 39 ||||||||||||||:!!...! ! !!!.! !!:! ! ! ! ! !! ! .! lyLeuTrpProTyrLysArgTyrLysLeuThrPheLeuTyrAsnThrTyrMetLeuPh 447073 : GACTGTGGCCGTACAAGAGGTACAAGTTGACATTCCTTTACAATACCTACATGCTGTT : 447129 40 : eIleValIleMetThrThrValCysGln >>>> Target Intron 1 >>>> I : 49 !.!! !!|||! .!! ! !! !||| 420 bp | ePhePheIleThrAlaPhePheLeuGln++ ++I 447130 : CTTCTTCATCACCGCTTTCTTTCTTCAGgt.........................aga : 447579 50 : leAlaLysLeuIleGluLeuArgGlnAspValAsnLeuValMetLysLeuLeuSerPr : 68 || ...... !..! !||||||:!! !:!!:!:!.. ! !:!! leMetIlePhePheThrThrGluLeuAspValAspThrIleLeuSerAspGlyAlaCy 447580 : taatgatatttttcaccACAGAATTAGACGTTGATACGATTTTAAGTGATGGTGCCTG : 447636 69 : oIleValLeuTyrValValTyrIleIleLysTyrGlnThrPheCysIleValAlaLys : 87 !|||:!!:!!! :!!:!!||||||:!:|||||| |||||||||! !|||||| sIleIleMetLeuLeuIleTyrIleValLysTyrCysThrPheCysLysGlnAlaLys 447637 : TATAATCATGTTGCTCATCTACATAGTGAAATACTGCACGTTCTGCAAGCAGGCCAAA : 447693 88 : LysIle : 89 !!.:!: AsnVal 447694 : AACGTG : 447701 vulgar: CbirOr312 0 89 . KQ414815.1 447014 447701 + 144 M 48 144 5 0 2 I 0 416 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 447015 447701 144 + . gene_id 4 ; sequence CbirOr312 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 447015 447158 . + . KQ414815.1 exonerate:protein2genome:local exon 447015 447158 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 447159 447160 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 447159 447578 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 447577 447578 . + . intron_id 0 ; splice_site "Ag" KQ414815.1 exonerate:protein2genome:local cds 447579 447701 . + . KQ414815.1 exonerate:protein2genome:local exon 447579 447701 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 447015 447701 144 + . alignment_id 4 ; Query CbirOr312 ; Align 447015 1 144 ; Align 447579 49 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr312 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 134 -> 215 Target range: 471573 -> 471816 135 : LeuThrCysPhePheLeuProPheAlaProSerIleLeuAspIlePheMetProLeuA : 154 :!!||| !! ! .!.||| !!.!.:!!||| !||||||||||||.!.!!:||||||| IleThrSerValIleLeuSerMetSerProLeuIleLeuAspIleIleIleProLeuA 471574 : ATTACTAGTGTAATACTGTCCATGTCGCCTCTTATTCTCGATATTATAATACCTCTGA : 471631 155 : snValSerArgProArgGlnLeuLeuPheProGlyGluTyrPheValAspGlnGluLy : 173 ||..!|||||||||||| ! !!!! !||| !! !!!:!:!.!! !:!!||||||:! snThrSerArgProArgTyrPheProPheThrPheAspPheIleProAsnGlnGluGl 471632 : ACACGTCACGTCCACGTTACTTTCCATTTACGTTCGATTTCATTCCCAATCAAGAGGA : 471688 174 : sTyrPheTyrAlaIleTrpLeuHisLeuAspIleThrLeuSerLeuValValThrThr : 192 !||||||!! !!||| :!! !! !! !||| !! !! !! !! !:!!.!!.!! uTyrPhe***ProIleThrIlePheSerGlyIleLeuCysIleCysGlyLeuAlaAla 471689 : ATACTTCTAACCGATTACTATCTTTTCTGGCATATTGTGCATTTGTGGATTAGCAGCA : 471745 193 : LeuIleGlyThrGluSerLeuTyrIleIleTyrIleGlnHisValCysGlyMetPheG : 212 :!!|||.!!!:!|||.!!||| !!!:!!: !!:!! !|||||| !!|||:!!!:!. MetIleSerSerGluGlyLeuLeuMetMetAsnValLeuHisValArgGlyLeuTyrA 471746 : ATGATAAGTAGCGAGGGTCTGCTTATGATGAATGTTTTACACGTACGTGGATTGTATA : 471805 213 : lnValAlaSer : 215 !.:!!|||!!! snIleAlaThr 471806 : ACATCGCTACG : 471816 vulgar: CbirOr312 134 215 . KQ414815.1 471573 471816 + 133 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471574 471816 133 + . gene_id 5 ; sequence CbirOr312 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471574 471816 . + . KQ414815.1 exonerate:protein2genome:local exon 471574 471816 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471574 471816 133 + . alignment_id 5 ; Query CbirOr312 ; Align 471574 135 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr312 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 145 -> 211 Target range: 482031 -> 482229 146 : IleLeuAspIlePheMetProLeuAsnValSerArgProArgGlnLeuLeuPheProG : 165 :!!||||||:!!.!!:!:|||||||||! !!!!||| !!!.!|||!!!! ! ! !! ValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerM 482032 : GTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAA : 482089 166 : lyGluTyrPheValAspGlnGluLysTyrPheTyrAlaIleTrpLeuHisLeuAspIl : 184 !|||||||||:!!||||||:!!||||||! ! !||| !!!!|||! ! .! etGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPh 482090 : TGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTT : 482146 185 : eThrLeuSerLeuValValThrThrLeuIleGlyThrGluSerLeuTyrIleIleTyr : 203 !:!!!!! !:!!|||!.!|||! !:!!:!!|||! !|||!!!||| !:!!!!:!:: eSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrp 482147 : TTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGG : 482203 204 : IleGlnHisValCysGlyMetPhe : 211 :!!:!!|||!.!....!!:!!||| LeuGluHisAlaAlaSerLeuPhe 482204 : CTTGAACACGCTGCAAGCTTGTTC : 482229 vulgar: CbirOr312 145 211 . KQ414815.1 482031 482229 + 132 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482032 482229 132 + . gene_id 6 ; sequence CbirOr312 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482032 482229 . + . KQ414815.1 exonerate:protein2genome:local exon 482032 482229 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482032 482229 132 + . alignment_id 6 ; Query CbirOr312 ; Align 482032 146 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr312 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 165 -> 284 Target range: 478641 -> 479396 166 : GluTyrPheValAspGlnGluLysTyrPheTyrAlaIleTrpLeuHisLeuAspIleT : 185 |||||||||:!!|||::::::||||||||| ||| |||:!! !!:!:: GluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValTyrLeuS 478642 : GAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGTACCTGT : 478699 186 : hrLeuSerLeuValValThrThrLeuIleGlyThrGluSerLeuTyrIleIleTyrIl : 204 !!|||! !:!! !!.!|||..!! !:!!!.!|||||||||! ! |||!!:!::!! erLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMetTrpMe 478700 : CGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTATGTGGAT : 478756 205 : eGlnHisValCysGlyMetPheGlnValAlaSerTyrArgLeuTyrGlnAlaPheAsp : 223 : !|||..! !|||:!!!:!.!.:!! !!!!|||!.!! ! ! ::! !.!!||| tValHisThrIleGlyLeuTyrAsnIleIleArgTyrAsnGlnGlnArgLeuIleAsp 478757 : GGTGCATACTATCGGCTTGTATAATATCATAAGGTATAATCAGCAAAGATTGATCGAT : 478813 224 : LysLysValLeuGlnAla<-><->TyrAlaProGluLysArgAlaIleIleValTyrA : 241 !! ! !! ! ||| ::! !!.!.:!!|||:!!.!!.!!!.! !! ProIleHisCysPheAlaThr***ArgSerAlaHisGlnArgSerPhePheAlaIleA 478814 : CCGATACACTGTTTTGCTACCTGACGAAGCGCACATCAACGATCATTTTTCGCCATCA : 478873 242 : rgLysIleIleGluAlaIleTyrIleHisAsnArgThrIleGluPhe<->PheGluPh : 259 .! ! !|||... ! ! !||||||||| ... ...:::|| snGlySerIleSerLeu***LysCysHisAsnArgCysPheThrSer***IleLysPh 478874 : ATGGGTCAATTTCTCTTTAGAAATGCCataacagatgtttcacgagttaaataaaatt : 478930 260 : eLeuTrpSerThrLeuMetVal{S} >>>> Target Intron 1 >>>> {er} : 267 |||||||... |||::: {|} 389 bp {||} eLeuTrpLysIleLeuIleSer{S}++ ++{er} 478931 : tctttggaaaatattaattagt{t}gt.........................ag{CG} : 479344 268 : TyrSerIleLeuLeuThrIleGlyIleThrSerLeuValMetAsnLeuPhe : 284 ||||||:!!|||||| !.!!!.!|||||||||||| !!!:||||||!:! TyrSerValLeuLeuLeuPheAlaIleThrSerLeuSerIleAsnLeuTyr 479345 : TACAGTGTTCTCCTTTTGTTCGCTATCACCTCGTTGAGCATTAATTTGTAT : 479396 vulgar: CbirOr312 165 284 . KQ414815.1 478641 479396 + 112 M 64 192 G 0 6 M 27 81 G 0 3 M 10 30 S 0 1 5 0 2 I 0 385 3 0 2 S 1 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478642 479396 112 + . gene_id 7 ; sequence CbirOr312 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 478642 478954 . + . KQ414815.1 exonerate:protein2genome:local exon 478642 478954 . + . insertions 9 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 478955 478956 . + . intron_id 1 ; splice_site "gt" KQ414815.1 exonerate:protein2genome:local intron 478955 479343 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 479342 479343 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 479344 479396 . + . KQ414815.1 exonerate:protein2genome:local exon 479344 479396 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478642 479396 112 + . alignment_id 7 ; Query CbirOr312 ; Align 478642 166 192 ; Align 478840 230 81 ; Align 478924 257 30 ; Align 479346 268 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr312 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 328 -> 384 Target range: 490182 -> 490350 329 : GlyIlePheGlnLysThrTyrIleThrArgTrpHisSerAlaProValArgAlaGlnL : 348 ..!|||.!!.!.!:! ! !!! !..!!.!|||:!!!!!||||||:!! ! !|||| AsnIleLeuAsnArgCysAsnSerValAsnTrpTyrThrAlaProIleAlaIleGlnL 490183 : AACATACTTAATAGATGCAACAGCGTGAATTGGTACACGGCTCCAATTGCCATACAAA : 490240 349 : ysLeuLeuProPheIleMetGlnArgSerMetLysSerCysLysMetAspMetGlyGl : 367 |||||||| !.!!|||||||||!.!!!!!!:::!!:!! !..!!!: :!: !|| ysLeuLeuLeuIleIleMetGlnAsnThrIleArgAsnSerSerIleThrLeuPheGl 490241 : AATTGCTGTTGATCATTATGCAAAATACTATACGAAATTCTTCAATAACACTCTTCGG : 490297 368 : yIlePheValSerSerPheGluGlyPheAlaSerLeuMetSerThrThrLeu : 384 |!!:!:!:!!|||||||||!!:|||||| !! !:!!! !:!||| ::: yMetTyrIleSerSerPheAspGlyPhePheMetValAsnAsnThrIleIle 490298 : AATGTATATATCGTCTTTCGATGGTTTCTTCATGGTAAATAACAcgattatt : 490350 vulgar: CbirOr312 328 384 . KQ414815.1 490182 490350 + 103 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 490183 490350 103 + . gene_id 8 ; sequence CbirOr312 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 490183 490350 . + . KQ414815.1 exonerate:protein2genome:local exon 490183 490350 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 490183 490350 103 + . alignment_id 8 ; Query CbirOr312 ; Align 490183 329 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr301 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 134 -> 212 Target range: 457177 -> 457411 135 : ThrPheThrLeuMetGlnPheLeuProValIleSerAspIleIleIleProLeuAsnI : 154 ..!.!!||| !:!!|||.!!!!!|||:!!:!! !||||||:!::!!||||||||| ValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnG 457178 : GTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACG : 457235 155 : leSerArgProArgArgPheTyrValArgLeuGluPhePheIleAsnGluGluLysTy : 173 !||||||||| !!..!!!.|||:!!! ! !|||!:!|||:!!:!! !:!!||||| luSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTy 457236 : AATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTA : 457292 174 : rPheTyrValIleAlaPheTyrThrIleLeuSerLeuThrValGlyAlaAlaThrVal : 192 |.!.:!! !||| ! :!!! !||| !!!!||| !:!!!.!|||.!!|||:!! rMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeu 457293 : TATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTA : 457349 193 : ValSerThrGlyAlaSerLeuLeuThrPheGlyHisHisSerCysAlaMetPheLysI : 212 ..!:!!!.!! !:!!! !|||:!!||| !! !! ||| !|||!.!:!!||||||: ThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysL 457350 : ACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGC : 457409 213 : le : 212 !! eu 457410 : TT : 457411 vulgar: CbirOr301 134 212 . KQ414815.1 457177 457411 + 150 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457178 457411 150 + . gene_id 1 ; sequence CbirOr301 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457178 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457178 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457178 457411 150 + . alignment_id 1 ; Query CbirOr301 ; Align 457178 135 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr301 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 144 -> 212 Target range: 485722 -> 485926 145 : IleSerAspIleIleIleProLeuAsnIleSerArgProArgArgPheTyrValArgL : 164 ||| !||||||:!:|||||||||||| !!!!|||||||||! !.!! !:!!!.!! IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 165 : euGluPhePheIleAsnGluGluLysTyrPheTyrValIleAlaPheTyrThrIleLe : 183 !||| !|||:!!:!!:!!:!!|||||||||||| !|||||| :!!..!:!!|| erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 184 : uSerLeuThrValGlyAlaAlaThrValValSerThrGlyAlaSerLeuLeuThrPhe : 202 |! !:!!! !:!!|||||| !..!:!!:!!|||||| ::::::.!!.!. uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 203 : GlyHisHisSerCysAlaMetPheLysIle : 212 !!!.|||!!!|||!.!:!!!:!! !||| IleGlnHisThrCysGlyLeuTyrThrIle 485895 : ATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr301 144 212 . KQ414815.1 485722 485926 + 147 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485926 147 + . gene_id 2 ; sequence CbirOr301 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485926 147 + . alignment_id 2 ; Query CbirOr301 ; Align 485723 145 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr301 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 132 -> 212 Target range: 475530 -> 475770 133 : LeuCysThrPheThrLeuMetGlnPheLeuProValIleSerAspIleIleIleProL : 152 :!!! !|||.!.! !|||:!:! |||! ! !! !||| !||| !:!::!!|||| IlePheThrMetIleLeuLeuLeuPheSerSerLysIleLeuAspSerLeuLeuProL 475531 : ATATTCACCATGATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTACCCC : 475588 153 : euAsnIleSerArgProArgArgPheTyrValArgLeuGluPhePheIleAsnGluGl : 171 ||||| |||||||||!!! !!! ! :::|||:::|||:::||||||||||||:! euAsnGluSerArgProSerTrpSerLeuIleArgIleGluTyrPheIleAsnGluGl 475589 : TGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaatagaatatttcataaacGAACA : 475645 172 : uLysTyrPheTyrValIleAlaPheTyrThrIleLeuSerLeuThrValGlyAlaAla : 190 !||||||||||||:!!! !!.!.!!||| !! !:!!!!!:!! !:!! !!.!.!! nLysTyrPheTyrLeuSerValIleTyrGlnThrValThrIleLeuLeuPheGlyThr 475646 : GAAATACTTTTATCTGAGCGTGATCTATCAGACTGTAACGATCCTTCTGTTTGGTACC : 475702 191 : ThrValValSerThrGlyAlaSerLeuLeuThrPheGlyHisHisSerCysAlaMetP : 210 ||| !|||:!!|||! !|||! !!!! !! !!:: !!!.|||!!! ::::::| ThrTyrValAlaThrGluAlaIlePheThrMetTrpLeuGlnHisCysIleSerLeuP 475703 : ACGTACGTAGCAACTGAAGCAATATTTACCATGTGGTTGCAACATTGCATaagtttat : 475762 211 : heLysIle : 212 ||:::||| heGluIle 475763 : ttgaaatt : 475770 vulgar: CbirOr301 132 212 . KQ414815.1 475530 475770 + 142 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475531 475770 142 + . gene_id 3 ; sequence CbirOr301 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475531 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475531 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475531 475770 142 + . alignment_id 3 ; Query CbirOr301 ; Align 475531 133 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr301 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 127 -> 213 Target range: 471555 -> 471813 128 : PheGlyThrLeuLeuLeuCysThrPheThrLeuMetGlnPheLeuProValIleSerA : 147 !:! !||| !|||||| !||| !..!:!!:!!....!.! !|||:!!||| !| TyrTyrThrAsnLeuLeuIleThrSerValIleLeuSerMetSerProLeuIleLeuA 471556 : TATTACACGAATCTACTCATTACTAGTGTAATACTGTCCATGTCGCCTCTTATTCTCG : 471613 148 : spIleIleIleProLeuAsnIleSerArgProArgArgPheTyrValArgLeuGluPh : 166 ||||||||||||||||||||! |||||||||||| !||| !!! !!!!!!:|| spIleIleIleProLeuAsnThrSerArgProArgTyrPheProPheThrPheAspPh 471614 : ATATTATAATACCTCTGAACACGTCACGTCCACGTTACTTTCCATTTACGTTCGATTT : 471670 167 : ePheIleAsnGluGluLysTyrPheTyrValIleAlaPheTyrThrIleLeuSerLeu : 185 |.!! !|||:!!|||:!!||||||!! !|||.!!.!!!:!:!! !:!!! !! ! eIleProAsnGlnGluGluTyrPhe***ProIleThrIlePheSerGlyIleLeuCys 471671 : CATTCCCAATCAAGAGGAATACTTCTAACCGATTACTATCTTTTCTGGCATATTGTGC : 471727 186 : ThrValGlyAlaAlaThrValValSerThrGlyAlaSerLeuLeuThrPheGlyHisH : 205 ! ! !||| !|||.!!:!!:!!|||!:!! !!.! !|||:!!! ! !! ! | IleCysGlyLeuAlaAlaMetIleSerSerGluGlyLeuLeuMetMetAsnValLeuH 471728 : ATTTGTGGATTAGCAGCAATGATAAGTAGCGAGGGTCTGCTTATGATGAATGTTTTAC : 471787 206 : isSerCysAlaMetPheLysIleAla : 213 || ! !!!.!:!!!:!!!.|||||| isValArgGlyLeuTyrAsnIleAla 471788 : ACGTACGTGGATTGTATAACATCGCT : 471813 vulgar: CbirOr301 127 213 . KQ414815.1 471555 471813 + 131 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471556 471813 131 + . gene_id 4 ; sequence CbirOr301 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471556 471813 . + . KQ414815.1 exonerate:protein2genome:local exon 471556 471813 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471556 471813 131 + . alignment_id 4 ; Query CbirOr301 ; Align 471556 128 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr301 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 137 -> 212 Target range: 464612 -> 464840 138 : LeuMetGlnPheLeuProValIleSerAspIleIleIleProLeuAsnIleSerArgP : 157 |||:!::!! ! ||||||! !||| !|||:!::!! ||||||||| !|||||| LeuLeuGluValLeuProAspIleLeuAspValValAlaProLeuAsnGluSerArgS 464613 : TTACTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATGAATCTCGTT : 464670 158 : roArgArgPheTyrValArgLeuGluPhePheIleAsnGluGluLysTyrPheTyrVa : 176 !!!.!!:!!:!! :!!! ! !||||||||||||!.!!!:.....! !|||:! erHisGlnTyrLeuIleThrAlaGluPhePheIleThrAspSerSerProAsnTyrIl 464671 : CTCATCAATACTTAATTACCGCGGAATTTTTCATCACTGATAGTTCGCCGAATTATAT : 464727 177 : lIleAlaPheTyr<->ThrIleLeuSerLeuThrValGlyAlaAlaThrValValSer : 194 !:!!.!!! ! ! ||| !:!!!!!|||! !:!!|||!.!.!!|||:!!:!!:!! eValThrCysValGlyThrAspIleThrLeuIleMetGlyValThrThrIleIleAla 464728 : CGTAACTTGTGTTGGTACGGATATTACTCTTATCATGGGAGTCACGACAATAATTGCC : 464784 195 : ThrGlyAlaSerLeuLeuThrPheGlyHisHisSerCysAlaMetPheLysIle : 212 :!!! !.!!! ! !!!! !!!. !!!.|||! !|||||||||||||||||| SerGluThrPheThrPheLeuLeuLeuGlnHisIleCysAlaMetPheLysIle 464785 : TCCGAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAATGTTCAAAATC : 464840 vulgar: CbirOr301 137 212 . KQ414815.1 464612 464840 + 120 M 43 129 G 0 3 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464613 464840 120 + . gene_id 5 ; sequence CbirOr301 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464613 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464613 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464613 464840 120 + . alignment_id 5 ; Query CbirOr301 ; Align 464613 138 129 ; Align 464745 181 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr301 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 124 -> 211 Target range: 467629 -> 467890 125 : PheThrSerPheGlyThrLeuLeuLeuCysThrPheThrLeuMetGlnPheLeuProV : 144 |||::: !:! !! !! !:!!:!! .!! !!! !|||:!:! !|||! : PheSerValTyrLeuIleProIleIleIleAlaValIleLeuLeuProPheTyrAspI 467630 : ttttcagtgTACTTAATTCCAATCATTATAGCCGTTATATTATTACCATTCTacgata : 467687 145 : alIleSerAspIleIleIleProLeuAsnIleSerArgProArgArgPheTyrValAr : 163 ::||| :::|||::: ! !!||||||:!!|||||| !! !..!!!. !!.! leIlePheAsnIleValThrSerLeuAsnValSerArgGluIleGluLeuProAlaAs 467688 : taattttcaatattgtaaCATCGTTGAACGTATCACGTGAGATTGAATTACCTGCTGA : 467744 164 : gLeuGluPhePheIleAsnGluGluLysTyrPheTyrValIleAlaPheTyrThrIle : 182 !||||||!:!|||! !:!!|||...||||||!:! !:!!! ! !!!.:!!..!:!! pLeuGluTyrPheThrAspGluSerLysTyrTyrProIleLysLeuLeuHisValVal 467745 : TCTTGAGTACTTTACAGACGAAAGCAAGTATTATCCTATTAAACTGTTACATGTGGTT : 467801 183 : LeuSerLeuThrValGlyAlaAlaThrValValSerThrGlyAlaSerLeuLeuThrP : 202 ! ! !! !..!|||!.!.!!..!|||:!!! !! !! !::!!!!||||||! !| SerHisAlaIleThrGlyValThrValValIlePheIleAspSerThrLeuLeuIleP 467802 : AGTCATGCTATCACTGGAGTGACGGTTGTGATTTTCATTGATAGTACGTTGTTGATAT : 467861 203 : heGlyHisHisSerCysAlaMetPheLys : 211 || !!!.:!!|||||||||:!:|||||| heLeuGlnTyrSerCysAlaLeuPheLys 467862 : TCCTCCAATATTCTTGTGCGCTCTTCAAA : 467890 vulgar: CbirOr301 124 211 . KQ414815.1 467629 467890 + 120 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 467630 467890 120 + . gene_id 6 ; sequence CbirOr301 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 467630 467890 . + . KQ414815.1 exonerate:protein2genome:local exon 467630 467890 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 467630 467890 120 + . alignment_id 6 ; Query CbirOr301 ; Align 467630 125 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr301 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 330 -> 384 Target range: 458543 -> 458705 331 : TyrAspIleProTrpTyrAlaAlaProIleArgIleGlnLysLeuValMetPheLeuL : 350 ||| |||||||||||| !||||||:!!||||||||||||! !:!!:!!|||:!!! TyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleS 458544 : TACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATAT : 458601 351 : euGlnArgGlyThrLysAlaPheValLeuGlnIleGlyGlyIlePheIleGlySerLe : 369 !:!!|||.!!! !!:!!.! ! !||| !!: !|||!!:.!!|||!..|||.. erGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPh 458602 : CAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatcctt : 458658 370 : uGluGlyPheAlaThrLeuLeuSerThrSerLeuSerTyrPheThr : 384 .||| |||||||||:!! !!.!:!!!!!||| :::|||::: eGluPhePheAlaThrValThrLysSerTrpLeu***HisPheSer 458659 : cgaatttttcgccaCGGTAACAAAATCTTGGCtatgacatttttct : 458705 vulgar: CbirOr301 330 384 . KQ414815.1 458543 458705 + 113 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458544 458705 113 + . gene_id 7 ; sequence CbirOr301 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 458544 458705 . + . KQ414815.1 exonerate:protein2genome:local exon 458544 458705 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458544 458705 113 + . alignment_id 7 ; Query CbirOr301 ; Align 458544 331 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr301 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 144 -> 212 Target range: 482031 -> 482235 145 : IleSerAspIleIleIleProLeuAsnIleSerArgProArgArgPheTyrValArgL : 164 :!! !|||:!!|||:!!||||||||| !!!||| !!!.!!:!||| ||| !: ValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerM 482032 : GTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAA : 482089 165 : euGluPhePheIleAsnGluGluLysTyrPheTyrValIleAlaPheTyrThrIleLe : 183 !!|||!:!||||||:!!:!!:!!||||||! ! !!|||.!!|||:!! ! !! etGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPh 482090 : TGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTT : 482146 184 : uSerLeuThrValGlyAlaAlaThrValValSerThrGlyAlaSerLeuLeuThrPhe : 202 !|||!!! !|||! !|||.!!! !:!!|||.!!! !! !.!!! !:!!:!!! !!:: eSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrp 482147 : TTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGG : 482203 203 : GlyHisHisSerCysAlaMetPheLysIle : 212 !.!.|||:!!...::!:!!|||! :!! LeuGluHisAlaAlaSerLeuPheThrLeu 482204 : CTTGAACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: CbirOr301 144 212 . KQ414815.1 482031 482235 + 111 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482032 482235 111 + . gene_id 8 ; sequence CbirOr301 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482032 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 482032 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482032 482235 111 + . alignment_id 8 ; Query CbirOr301 ; Align 482032 145 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr300PSE(S/F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 89 -> 212 Target range: 484778 -> 485926 90 : LysIleLeuLeuGluGlnIleGlnHisAspTrpAsnThrLeu<->AsnGlyLysGluL : 108 ||| !!!||||||!:!|||:!!||||||||||||:!!||| ||| !:!!|||| LysGluPheLeuGluArgIleGluHisAspTrpAsnSerLeuThrAsnLysGluGluL 484779 : AAGGAGTTTTTGGAACGAATTGAACACGATTGGAACTCGTTGACGAATAAAGAGGAGC : 484836 109 : euGluIleMetLysGlnTyrLeuAsnAsnSerArgLeuPheMetIleIlePheThr{S : 127 ||..!|||!!: ! :!!|||! !!:! !!!!|||:!!.!.! ||| !|||:!!{! euArgIleIleHisGluTyrSerSerValThrArgValLeuThrIleCysPheSer{L 484837 : TTCGGATCATTCACGAATATTCCAGTGTCACGAGAGTTCTAACCATATGTTTCTCA{T : 484893 128 : } >>>> Target Intron 1 >>>> {er}PheAlaThrMetSerValCysAla : 135 } 776 bp { !}.!! ! ! |||:!! !!.! }++ ++{eu}IleIleGlyProSerLeuLeuVal 484894 : }gt.........................ag{TA}ATTATCGGTCCATCGTTACTTGTG : 485693 136 : PheThrPheIleGlnLeuLeuProValThrLeuAspValIleIleProLeuAsnValS : 155 .!.! !.!! ! !!!! ! ! !! !||||||:!!:!:|||||||||||| !! LeuIleLeuGlyIlePheAsnAsnSerIleLeuAspIleLeuIleProLeuAsnTyrT 485694 : CTGATTCTTGGTATATTTAACAACAGTATTCTGGACATTTTGATTCCTTTGAATTACA : 485753 156 : erArgProArgArgPheTyrPheArgLeuGluLeuPheIleAsnLysGluLysTyrPh : 174 !!|||||||||! !.!! !.!.!.!! !|||! !|||:!!:!!:!!:!!|||||||| hrArgProArgThrIleProIleAsnSerGluHisPheValAspGlnGlnLysTyrPh 485754 : CTCGTCCGCGGACGATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTT : 485810 175 : eTyrValIleAlaPheTyrThrIleLeuSerLeuCysValSerAlaAlaThrIleVal : 193 |||| !|||||| :!!..!:!!|||! !:!! !:!!.!!||| !..!:!!:!! eTyrProIleAlaAlaHisValValLeuPheValIleIleGlyAlaIleValLeuLeu 485811 : CTACCCTATTGCAGCACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTC : 485867 194 : SerThrGlyAlaSerLeuLeuThrPheGlyGlnHisSerCysAlaMetLeuLysIle : 212 |||||| ::::::.!!.!. !||||||!!!|||!.!:!!! !! !||| SerThrGluIleLeuIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIle 485868 : AGCaccgaaatattaattatggCGATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr300PSE(S/F) 89 212 . KQ414815.1 484778 485926 + 180 M 14 42 G 0 3 M 23 69 S 0 1 5 0 2 I 0 772 3 0 2 S 1 2 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 484779 485926 180 + . gene_id 1 ; sequence CbirOr300PSE(S/F) ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 484779 484893 . + . KQ414815.1 exonerate:protein2genome:local exon 484779 484893 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 484894 484895 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 484894 485669 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 485668 485669 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 485670 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485670 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 484779 485926 180 + . alignment_id 1 ; Query CbirOr300PSE(S/F) ; Align 484779 90 42 ; Align 484824 104 69 ; Align 485672 128 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr300PSE(S/F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 134 -> 212 Target range: 457177 -> 457411 135 : AlaPheThrPheIleGlnLeuLeuProValThrLeuAspValIleIleProLeuAsnV : 154 !.!.!!||| :!:||||||!!!|||:!! !||||||:!!:!::!!|||||||||! ValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnG 457178 : GTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACG : 457235 155 : alSerArgProArgArgPheTyrPheArgLeuGluLeuPheIleAsnLysGluLysTy : 173 !||||||||| !!..!!!.|||.!!! ! !|||! !|||:!!:!!! !:!!||||| luSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTy 457236 : AATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTA : 457292 174 : rPheTyrValIleAlaPheTyrThrIleLeuSerLeuCysValSerAlaAlaThrIle : 192 |.!.:!! !||| ! :!!! !||| !!!!||| :!!:!!|||.!!|||:!! rMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeu 457293 : TATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTA : 457349 193 : ValSerThrGlyAlaSerLeuLeuThrPheGlyGlnHisSerCysAlaMetLeuLysI : 212 ..!:!!!.!! !:!!! !|||:!!||| !! !! !||| !|||!.!:!!!!!|||: ThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysL 457350 : ACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGC : 457409 213 : le : 212 !! eu 457410 : TT : 457411 vulgar: CbirOr300PSE(S/F) 134 212 . KQ414815.1 457177 457411 + 149 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457178 457411 149 + . gene_id 2 ; sequence CbirOr300PSE(S/F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457178 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457178 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457178 457411 149 + . alignment_id 2 ; Query CbirOr300PSE(S/F) ; Align 457178 135 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr300PSE(S/F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 92 -> 200 Target range: 471371 -> 471777 93 : LeuGluGlnIleGlnHisAspTrpAsn<->ThrLeuAsnGlyLysGluLeuGluIleM : 111 |||!!::!!!!: !!.!:!!|||||| |||! !||| ! ||||||||||||: LeuAspGluMetThrArgAsnTrpAsnGluThrArgAsnIleValGluLeuGluIleL 471372 : CTAGACGAGATGACGCGTAATTGGAACGAAACGCGAAACATAGTCGAGCTGGAAATAT : 471429 112 : etLysGlnTyrLeuAsnAsnSerArgLeuPheMetIleIlePheThr{S} >>>> T : 127 !!|||:!!:!! !::!! .!!!:!! !||| !||||||! !! !{.} euLysGluHisAlaSerMetGlyLysArgPheSerIleIleCysIle{G}++ 471430 : TGAAGGAACACGCGTCTATGGGGAAACGTTTCTCGATTATTTGCATC{G}gt...... : 471480 128 : arget Intron 1 >>>> {er}Phe<->AlaThrMetSerValCysAlaPheThr : 137 73 bp {!!}||| !|||! !:!! !.!! !..! ++{ly}PheTyrTyrThrAsnLeuLeuIleThrSerVal 471481 : ...................ag{GT}TTCTATTACACGAATCTACTCATTACTAGTGTA : 471583 138 : PheIleGlnLeuLeuProValThrLeuAspValIleIleProLeuAsnValSerArgP : 157 .!.:!:...:!!! !|||:!!! !||||||:!!|||||||||||||||..!||||||| IleLeuSerMetSerProLeuIleLeuAspIleIleIleProLeuAsnThrSerArgP 471584 : ATACTGTCCATGTCGCCTCTTATTCTCGATATTATAATACCTCTGAACACGTCACGTC : 471643 158 : roArgArgPheTyrPheArgLeuGluLeuPheIleAsnLysGluLysTyrPheTyrVa : 176 ||||| !||| |||! !!!!!!:!!!.!! !|||:!!|||:!!||||||!! roArgTyrPheProPheThrPheAspPheIleProAsnGlnGluGluTyrPhe***Pr 471644 : CACGTTACTTTCCATTTACGTTCGATTTCATTCCCAATCAAGAGGAATACTTCTAACC : 471700 177 : lIleAlaPheTyrThr<->IleLeuSerLeuCysValSerAlaAlaThrIleValSer : 194 !|||.!!.!!!:!:!! ||||||!!!:!!|||! !! !||||||! !||| !||| oIleThrIlePheSerGlyIleLeuCysIleCysGlyLeuAlaAlaMetIleSerSer 471701 : GATTACTATCTTTTCTGGCATATTGTGCATTTGTGGATTAGCAGCAATGATAAGTAGC : 471757 195 : ThrGlyAlaSerLeuLeu : 200 !||| ! !:!!:!! GluGlyLeuLeuMetMet 471758 : GAGGGTCTGCTTATGATG : 471777 vulgar: CbirOr300PSE(S/F) 92 200 . KQ414815.1 471371 471777 + 126 M 9 27 G 0 3 M 25 75 S 0 1 5 0 2 I 0 69 3 0 2 S 1 2 M 1 3 G 0 3 M 53 159 G 0 3 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471372 471777 126 + . gene_id 3 ; sequence CbirOr300PSE(S/F) ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 471372 471477 . + . KQ414815.1 exonerate:protein2genome:local exon 471372 471477 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 471478 471479 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 471478 471550 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 471549 471550 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 471551 471777 . + . KQ414815.1 exonerate:protein2genome:local exon 471551 471777 . + . insertions 6 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471372 471777 126 + . alignment_id 3 ; Query CbirOr300PSE(S/F) ; Align 471372 93 27 ; Align 471402 102 75 ; Align 471553 128 3 ; Align 471559 129 159 ; Align 471721 182 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr300PSE(S/F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 327 -> 384 Target range: 458534 -> 458705 328 : IleAlaAlaTyrGlyIleProTrpTyrValAlaProValArgIleGlnLysLeuValM : 347 ||| ! !||| !|||||||||||| !||||||:!!||||||||||||! !:!!: IleArgArgTyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuL 458535 : ATTCGTAGATACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCT : 458592 348 : etLeuLeuLeuGlnArgSerThrLysThrPheValLeuGlnIleGlyGlyLeuPheIl : 366 !!!!!:!!! !:!!||||||! !!:!..! ! !||| !!: !|||:!!.!!|| euPheIleSerGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIl 458593 : TGTTCATATCAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCAT : 458649 367 : eGlySerLeuGluGlyPheThrThrLeuIleSerThrSerLeuSerTyrPheThr : 384 |!..|||...||| |||...|||:!!! !!.!:!!!!!||| :::|||::: eAlaSerPheGluPhePheAlaThrValThrLysSerTrpLeu***HisPheSer 458650 : TGCatccttcgaatttttcgccaCGGTAACAAAATCTTGGCtatgacatttttct : 458705 vulgar: CbirOr300PSE(S/F) 327 384 . KQ414815.1 458534 458705 + 107 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458535 458705 107 + . gene_id 4 ; sequence CbirOr300PSE(S/F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 458535 458705 . + . KQ414815.1 exonerate:protein2genome:local exon 458535 458705 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458535 458705 107 + . alignment_id 4 ; Query CbirOr300PSE(S/F) ; Align 458535 328 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr300PSE(S/F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 124 -> 212 Target range: 481971 -> 482235 125 : PheThrSerPheAlaThrMetSerValCysAlaPheThrPheIleGlnLeuLeuProV : 144 ...|||::!!!. ! ! ||||||! !.!.! !.!. !!!.:!!! ! ! IleThrAlaLeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerP 481972 : attacagcGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTT : 482029 145 : alThrLeuAspValIleIleProLeuAsnValSerArgProArgArgPheTyrPheAr : 163 !!..!||||||||||||:!!|||||||||! !!!!||| !!!.!!:!||| ! heValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSe 482030 : TCGTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATC : 482086 164 : gLeuGluLeuPheIleAsnLysGluLysTyrPheTyrValIleAlaPheTyrThrIle : 182 !:!!|||! !||||||:!!:!!:!!||||||! ! !!|||.!!|||:!! ! rMetGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrp 482087 : AATGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGG : 482143 183 : LeuSerLeuCysValSerAlaAlaThrIleValSerThrGlyAlaSerLeuLeuThrP : 202 !!!|||!!! !||| !|||.!!! !||||||.!!! !! !.!!! !:!!:!!! !! PheSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetT 482144 : TTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGT : 482203 203 : heGlyGlnHisSerCysAlaMetLeuLysIle : 212 :: !:!!|||:!!...::!:!!!!!! :!! rpLeuGluHisAlaAlaSerLeuPheThrLeu 482204 : GGCTTGAACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: CbirOr300PSE(S/F) 124 212 . KQ414815.1 481971 482235 + 107 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481972 482235 107 + . gene_id 5 ; sequence CbirOr300PSE(S/F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481972 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481972 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481972 482235 107 + . alignment_id 5 ; Query CbirOr300PSE(S/F) ; Align 481972 125 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr300PSE(S/F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 137 -> 212 Target range: 464612 -> 464840 138 : PheIleGlnLeuLeuProValThrLeuAspValIleIleProLeuAsnValSerArgP : 157 !!.:!!:!!:!!||||||! !! !|||||||||:!! |||||||||! !|||||| LeuLeuGluValLeuProAspIleLeuAspValValAlaProLeuAsnGluSerArgS 464613 : TTACTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATGAATCTCGTT : 464670 158 : roArgArgPheTyrPheArgLeuGluLeuPheIleAsnLysGluLysTyrPheTyrVa : 176 !!!.!!:!!:!! .!!! ! !|||!!!||||||!.! ! .....! !|||:! erHisGlnTyrLeuIleThrAlaGluPhePheIleThrAspSerSerProAsnTyrIl 464671 : CTCATCAATACTTAATTACCGCGGAATTTTTCATCACTGATAGTTCGCCGAATTATAT : 464727 177 : lIleAlaPheTyr<->ThrIleLeuSerLeuCysValSerAlaAlaThrIleValSer : 194 !:!!.!!! ! ! ||| !:!!!!!||| !:!!.!!!.!.!!||||||:!!:!! eValThrCysValGlyThrAspIleThrLeuIleMetGlyValThrThrIleIleAla 464728 : CGTAACTTGTGTTGGTACGGATATTACTCTTATCATGGGAGTCACGACAATAATTGCC : 464784 195 : ThrGlyAlaSerLeuLeuThrPheGlyGlnHisSerCysAlaMetLeuLysIle : 212 :!!! !.!!! ! !!!! !!!. !||||||! !|||||||||!!!|||||| SerGluThrPheThrPheLeuLeuLeuGlnHisIleCysAlaMetPheLysIle 464785 : TCCGAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAATGTTCAAAATC : 464840 vulgar: CbirOr300PSE(S/F) 137 212 . KQ414815.1 464612 464840 + 103 M 43 129 G 0 3 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464613 464840 103 + . gene_id 6 ; sequence CbirOr300PSE(S/F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464613 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464613 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464613 464840 103 + . alignment_id 6 ; Query CbirOr300PSE(S/F) ; Align 464613 138 129 ; Align 464745 181 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr294 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 191 Query range: 88 -> 213 Target range: 456822 -> 457411 89 : ValLysLeuLeuLeuGluArgIleArgAspAspTrpAsnLeuLeuLysGlyLysLeuG : 108 :!!::! !:!!! !!!:!.!||| !|||||||||!!.! !||||||..!! ! !| IleArgGluIleTyrAspAsnIleAlaAspAspTrpLysSerLeuLysAsnMetGluG 456823 : ATACGGGAGATTTACGACAATATCGCTGACGATTGGAAATCATTGAAGAACATGGAAG : 456880 109 : luIleAspIleIleLysLysTyrAlaSerSerValArgLeuIleSerMetIleAlaIl : 127 |||||!::||||||:::|||||||||!:!.!!! !||| !.!!!!!:!: ! ! luIleGluIleIleArgLysTyrAlaAsnGlyGlyArgArgPheThrLeuAlaIleAl 456881 : AAATCGagattattcgaaaatatgcGAACGGTGGCAGGAGATTTACACTTGCAATAGC : 456937 128 : e{I} >>>> Target Intron 1 >>>> {le}ValCysHisPheAspIleLeu : 135 !{|} 214 bp {||} ! !:!!! !! ! !||| a{I}++ ++{le}SerThrTyrCysGlyAlaLeu 456938 : A{A}gt.........................ag{TT}TCTACTTATTGTGGCGCACTG : 457175 136 : CysTyrIleIleLeuGluHisLeuProLeuLeuLeuAspValIleLeuProLeuAsnL : 155 ! !! !! |||:!!! !!!!|||:!!|||||||||:!!:!::!!|||||||||: ValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnG 457176 : GTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACG : 457235 156 : ysSerArgThrLeuLysSerIleAlaIleThrGluTyrPheValThrArgGluLysTy : 174 !!|||||| !!! !:!!! ! ! !! !.!!|||||||||||| !! !:!!||||| luSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTy 457236 : AATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTA : 457292 175 : rIleTrpValThrLeuLeuHisGluIleIleAlaIleTyrIleArgValIleThrLeu : 193 |!!: !! !:!! !||| |||! ..!:!! ||| !!.!! !|||||| rMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeu 457293 : TATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTA : 457349 194 : CysCysThrGlyIleThrMetMetMetTyrIleLeuHisAlaCysAlaLeuPheLysI : 213 ..!!.!! ! ! !:!:!!:! ! !!:!!||||||!.!|||!.!|||||||||: ThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysL 457350 : ACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGC : 457409 214 : le : 213 !! eu 457410 : TT : 457411 vulgar: CbirOr294 88 213 . KQ414815.1 456822 457411 + 191 M 39 117 S 0 1 5 0 2 I 0 210 3 0 2 S 1 2 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 456823 457411 191 + . gene_id 1 ; sequence CbirOr294 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 456823 456940 . + . KQ414815.1 exonerate:protein2genome:local exon 456823 456940 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 456941 456942 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 456941 457154 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457153 457154 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457155 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457155 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 456823 457411 191 + . alignment_id 1 ; Query CbirOr294 ; Align 456823 89 117 ; Align 457157 129 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr294 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 116 -> 213 Target range: 475479 -> 475770 117 : SerSerValArgLeuIleSerMetIleAlaIleIleValCysHisPheAspIleLeuC : 136 :::||| ...:::... |||..!! !:!!:!! :!! |||!!! AsnSerTyrPhePheValGlyAsnIleValThrValLeuValTyrProThrIlePheT 475480 : aattcttattttttcgttgggaatattgtTACAGTACTGGTATACCCAACAATATTCA : 475537 137 : ysTyrIleIleLeuGluHisLeuProLeuLeuLeuAspValIleLeuProLeuAsnLy : 155 ! |||:!:||| !! ! !! !:!!|||||| !:!:||||||||||||:! hrMetIleLeuLeuLeuPheSerSerLysIleLeuAspSerLeuLeuProLeuAsnGl 475538 : CCATGATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTACCCCTGAACGA : 475594 156 : sSerArgThrLeuLysSerIleAlaIleThrGluTyrPheValThrArgGluLysTyr : 174 !|||||| !! ! !|||:!: |||||||||:::.....!:!!|||||| uSerArgProSerTrpSerLeuIleArgIleGluTyrPheIleAsnGluGlnLysTyr 475595 : GTCTCGTCCTAGCTGGTCTCTGAtacgaatagaatatttcataaacGAACAGAAATAC : 475651 175 : IleTrpValThrLeuLeuHisGluIleIleAlaIleTyrIleArgValIleThrLeuC : 194 .!!!:::!!!:!:!!:!!:!!:!!! !:!!.!!||| !:!: !! !! !|||! ! PheTyrLeuSerValIleTyrGlnThrValThrIleLeuLeuPheGlyThrThrTyrV 475652 : TTTTATCTGAGCGTGATCTATCAGACTGTAACGATCCTTCTGTTTGGTACCACGTACG : 475711 195 : ysCysThrGlyIleThrMetMetMetTyrIleLeuHisAlaCysAlaLeuPheLysIl : 213 ...|||! ! !! !.!.! |||!:::!:! !|||..! :::||||||:::|| alAlaThrGluAlaIlePheThrMetTrpLeuGlnHisCysIleSerLeuPheGluIl 475712 : TAGCAACTGAAGCAATATTTACCATGTGGTTGCAACATTGCATaagtttatttgaaat : 475768 214 : e : 213 | e 475769 : t : 475770 vulgar: CbirOr294 116 213 . KQ414815.1 475479 475770 + 125 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475480 475770 125 + . gene_id 2 ; sequence CbirOr294 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475480 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475480 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475480 475770 125 + . alignment_id 2 ; Query CbirOr294 ; Align 475480 117 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr294 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 123 -> 226 Target range: 464564 -> 464879 124 : MetIleAlaIleIleValCysHisPheAspIleLeuCysTyrIle<->IleLeuGluH : 142 .!.:!: !||| !|||||| !.!! !:!!:!! !:!||| :!!|||||| PheLeuAsnIleProValCysPheIleProValIleLeuPheIleCysLeuLeuGluV 464565 : TTCCTGAATATTCCAGTGTGCTTCATTCCCGTTATACTGTTCATCTGTTTACTCGAAG : 464622 143 : isLeuProLeuLeuLeuAspValIleLeuProLeuAsnLysSerArgThrLeuLysSe : 161 |||||| !:!!|||||||||:!! !|||||||||:!!||||||:!!! !:!!! alLeuProAspIleLeuAspValValAlaProLeuAsnGluSerArgSerHisGlnTy 464623 : TATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATGAATCTCGTTCTCATCAATA : 464679 162 : rIleAlaIleThrGluTyrPheValThrArgGluLysTyrIleTrp<->ValThrLeu : 179 !:!! !! !.!!|||!:!|||:!!||| !.....! ! !!:: ||||||! ! rLeuIleThrAlaGluPhePheIleThrAspSerSerProAsnTyrIleValThrCys 464680 : CTTAATTACCGCGGAATTTTTCATCACTGATAGTTCGCCGAATTATATCGTAACTTGT : 464736 180 : LeuHisGluIleIleAlaIleTyrIleArgValIleThrLeuCysCysThrGlyIleT : 199 :!! ! ! !|||.!!:!! !!!: !!|||! |||:!! !..!:!!! !! ValGlyThrAspIleThrLeuIleMetGlyValThrThrIleIleAlaSerGluThrP 464737 : GTTGGTACGGATATTACTCTTATCATGGGAGTCACGACAATAATTGCCTCCGAAACGT : 464796 200 : hrMetMetMetTyrIleLeuHisAlaCysAlaLeuPheLysIleAlaSerCysArgIl : 218 !! .!.:!!! :!:! !||| !||||||:!!|||||||||.!!!!!||| ! heThrPheLeuLeuLeuGlnHisIleCysAlaMetPheLysIleThrTrpCysAspGl 464797 : TCACTTTTTTGTTGCTGCAACATATCTGCGCAATGTTCAAAATCACATGGTGCGATGA : 464853 219 : eGluAsnAlaIleGlnGluAsnVal : 226 ! :::|||...|||||| uIleValLysLeuGlnArgAsnVal 464854 : AATCGtgaaattacaaagaaatGTG : 464879 vulgar: CbirOr294 123 226 . KQ414815.1 464564 464879 + 120 M 15 45 G 0 3 M 38 114 G 0 3 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464565 464879 120 + . gene_id 3 ; sequence CbirOr294 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464565 464879 . + . KQ414815.1 exonerate:protein2genome:local exon 464565 464879 . + . insertions 6 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464565 464879 120 + . alignment_id 3 ; Query CbirOr294 ; Align 464565 124 45 ; Align 464613 139 114 ; Align 464730 177 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr294 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 333 -> 392 Target range: 441705 -> 441955 334 : TyrAsnGlyLeuTrpTyrAlaAlaProProArgThrGlnLysLeuIleLeuPheValL : 353 ||||||..! !||||||..!!.!||| !!!!.!!|||||||||:!!||||||:!!: TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 354 : euGlnArgAlaIleValLysValAsnLeuThrCysGlyHisMetPheIleAlaSerLe : 372 !!..!!:!::!! :!! ! !!!.:!!!.! !..! !!!:||| ! !!!!!! etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 373 : uGluGlyPheLeuThr >>>> Target Intron 1 >>>> LeuThrSerSerA : 382 !:!!||||||! !:!! 73 bp :!!! !|||!!!: rLysGlyPheSerSer++ ++MetIleSerThrS 441821 : CAAAGGTTTTTCCTCGgt.........................agATGATAAGCACTT : 441923 383 : laLeuSerTyrPheAlaValIleTyrSerThr : 392 !!!!!|||||| !!|||!.!|||||||||||| erPheSerTyrValAlaAlaIleTyrSerThr 441924 : CCTTCTCGTATGTCGCAGCGATATATTCGACT : 441955 vulgar: CbirOr294 333 392 . KQ414815.1 441705 441955 + 112 M 44 132 5 0 2 I 0 69 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441955 112 + . gene_id 4 ; sequence CbirOr294 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 441706 441837 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441837 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 441838 441839 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 441838 441910 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 441909 441910 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 441911 441955 . + . KQ414815.1 exonerate:protein2genome:local exon 441911 441955 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441955 112 + . alignment_id 4 ; Query CbirOr294 ; Align 441706 334 132 ; Align 441911 378 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr294 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 133 -> 212 Target range: 467653 -> 467890 134 : IleLeuCysTyrIleIleLeuGluHisLeuProLeuLeuLeuAspValIleLeuProL : 153 |||:!!..! !|||:!!||| ! !! ::::::...::::::::: ! !!| IleIleAlaValIleLeuLeuProPheTyrAspIleIlePheAsnIleValThrSerL 467654 : ATTATAGCCGTTATATTATTACCATTCTacgatataattttcaatattgtaaCATCGT : 467711 154 : euAsnLysSerArgThrLeuLysSerIleAlaIleThrGluTyrPheValThrArgGl : 172 ||||| !|||||| !:!!:!!! ! !||| ! !|||||||||..! !..!.. euAsnValSerArgGluIleGluLeuProAlaAspLeuGluTyrPheThrAspGluSe 467712 : TGAACGTATCACGTGAGATTGAATTACCTGCTGATCTTGAGTACTTTACAGACGAAAG : 467768 173 : uLysTyrIleTrpValThrLeuLeuHisGluIleIleAlaIleTyrIleArgValIle : 191 .|||||| ! :!!! !|||||||||! !:!!! ! ! ! !! ! !!|||! rLysTyrTyrProIleLysLeuLeuHisValValSerHisAlaIleThrGlyValThr 467769 : CAAGTATTATCCTATTAAACTGTTACATGTGGTTAGTCATGCTATCACTGGAGTGACG : 467825 192 : ThrLeuCysCysThrGlyIleThrMetMetMetTyrIleLeuHisAlaCysAlaLeuP : 211 ..!:!! !! !! !! !! !|||:!!:!!!!:!:!:!!! !:!!:!!|||||||||| ValValIlePheIleAspSerThrLeuLeuIlePheLeuGlnTyrSerCysAlaLeuP 467826 : GTTGTGATTTTCATTGATAGTACGTTGTTGATATTCCTCCAATATTCTTGTGCGCTCT : 467885 212 : heLys : 212 ||||| heLys 467886 : TCAAA : 467890 vulgar: CbirOr294 133 212 . KQ414815.1 467653 467890 + 109 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 467654 467890 109 + . gene_id 5 ; sequence CbirOr294 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 467654 467890 . + . KQ414815.1 exonerate:protein2genome:local exon 467654 467890 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 467654 467890 109 + . alignment_id 5 ; Query CbirOr294 ; Align 467654 134 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr294 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 132 -> 213 Target range: 481992 -> 482235 133 : AspIleLeuCysTyrIleIleLeuGluHisLeuProLeuLeuLeuAspValIleLeuP : 152 ...:!:||| |||:!:! !.!. ! ! !!!!:!!||||||||||||:!!| SerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValP 481993 : TCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTC : 482050 153 : roLeuAsnLysSerArgThrLeuLysSerIleAlaIleThrGluTyrPheValThrAr : 171 ||||||||:!!!!!||||||! !:!!! ! !!.! !! !|||||||||:!! !!: roLeuAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGl 482051 : CTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCA : 482107 172 : gGluLysTyrIleTrpValThrLeuLeuHisGluIleIleAlaIleTyrIleArgVal : 190 !:!!|||||| ! !!! ! !!!!|||:!! .!!:!!.!! !:!! !!.! nGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAla 482108 : GCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCA : 482164 191 : IleThrLeuCysCysThrGlyIleThrMetMetMetTyrIleLeuHisAlaCysAlaL : 210 ! ! !:!! ! ! ! !! !! ! !!!::!:|||!:::!! !||||||...::!| ThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerL 482165 : ACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCT : 482224 211 : euPheLysIle : 213 |||||! :!! euPheThrLeu 482225 : TGTTCACCCTT : 482235 vulgar: CbirOr294 132 213 . KQ414815.1 481992 482235 + 102 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481993 482235 102 + . gene_id 6 ; sequence CbirOr294 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481993 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481993 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481993 482235 102 + . alignment_id 6 ; Query CbirOr294 ; Align 481993 133 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr289 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 194 Query range: 128 -> 290 Target range: 481977 -> 482896 129 : AlaPheSerTyrCysCysLeuLeuCysAlaGlyIleLeuGlnPheLeuProValIleL : 148 |||!!.! !||| ! :!!||| ! !:!:! !!!..!.! ! ! !!:!!| AlaLeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerPheValL 481978 : gcGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTC : 482035 149 : euAspLeuIleLeuProLeuAsnGluSerArgProLeuHisLeuIleValPheAlaGl : 167 |||||:!!|||:!!||||||||||||!!!||| !!! !!!.!!! !|||! !|| euAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMetGl 482036 : TAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGA : 482092 168 : uTyrPheIleAsnGlnGluGluTyrLeuTyrAlaMetLeuLeuHisGluIlePheAla : 186 ||||||||||:!!|||:!!:!!|||! ! ! !!!: !!!!|||:!! |||:!! uTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSer 482093 : GTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCC : 482149 187 : ValHisLeuAlaAlaIleAlaLeuCysCysThrSerThrThrIleMetSerTyrIleL : 206 !!! !:!!!.!|||! !:!! ! ! ! !..!||| !|||:!:! !!:::!! PheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuG 482150 : TTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTG : 482209 207 : euHisGlyCysAlaLeuLeuLysValAla{Se} >>>> Target Intron 1 >> : 216 !|||!.!...::!|||!!!! :!!!.!{||} 361 bp luHisAlaAlaSerLeuPheThrLeuVal{Se}++ 482210 : AACACGCTGCAAGCTTGTTCACCCTTGTA{AG}gt....................... : 482243 217 : >> {r}TyrArgValGluAsnAlaIleGlyGluAspIleLeuAlaIleProSerPro : 233 {|}||| !|||:!!!!.|||:!! !|||||| ! ! ! ||| ! ! ++{r}TyrTyrValLysLysAlaValLeuGluAspCysAlaGlnSerProHisVal 482244 : ..ag{C}TATTATGTGAAAAAAGCTGTCCTCGAAGATTGCGCTCAGTCGCCGCACGTT : 482651 234 : LysLysGluTyrLeu<-><-><->LeuTyrArgArgIleValAsnAlaValIleIleH : 250 ! !::!..!|||||| ! ! ! !:!!.!:!:||||||||||||:!! !| ThrArgArgTyrLeuSerAlaAsnCysLysGlnAsnLeuValAsnAlaValValAlaH 482652 : ACACGGAGATATTTAAGCGCCAATTGTAAACAGAACTTGGTGAACGCTGTGGTTGCAC : 482711 251 : isArgArgAlaIle{Gl} >>>> Target Intron 2 >>>> {u}PheIleAs : 258 |||||!:!||||||{ } 63 bp {!}|||:!!|| isArgLysAlaIle{Tr}++ ++{p}PheValAs 482712 : ACAGAAAAGCAATC{TG}gt.........................ag{G}TTTGTAGA : 482798 259 : pValPheThrSerSerPheAlaValSerTyrAspIleLeuIleIleIleGlyValSer : 277 | !!!.! !..! !!!:!!.! !!||||||! !|||:!!:!!:!:.!!|||||| ! pHisLeuLysAspArgTyrValPheSerTyrAlaIleValLeuLeuPheGlyValVal 482799 : CCATTTAAAAGACCGATACGTATTCTCTTATGCTATTGTTCTTTTGTTCGGTGTTGTC : 482855 278 : SerLeuSerIleAsnLeuPheGlnPheLeuGlnIleIle : 290 ||||||||||||||||||||| ! !...|||:!! SerLeuSerIleAsnLeuPheAlaValSerSerIleLeu 482856 : TCTCTCAGCATTAACCTGTTCGCCGTGAGTAGCATACTT : 482896 vulgar: CbirOr289 128 290 . KQ414815.1 481977 482896 + 194 M 87 261 S 0 2 5 0 2 I 0 357 3 0 2 S 1 1 M 22 66 G 0 9 M 16 48 S 0 2 5 0 2 I 0 59 3 0 2 S 1 1 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481978 482896 194 + . gene_id 1 ; sequence CbirOr289 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 481978 482240 . + . KQ414815.1 exonerate:protein2genome:local exon 481978 482240 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 482241 482242 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 482241 482601 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 482600 482601 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 482602 482727 . + . KQ414815.1 exonerate:protein2genome:local exon 482602 482727 . + . insertions 9 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 482728 482729 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 482728 482790 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 482789 482790 . + . intron_id 1 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 482791 482896 . + . KQ414815.1 exonerate:protein2genome:local exon 482791 482896 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481978 482896 194 + . alignment_id 1 ; Query CbirOr289 ; Align 481978 129 261 ; Align 482603 217 66 ; Align 482678 239 48 ; Align 482792 256 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr289 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 187 Query range: 139 -> 284 Target range: 475545 -> 476361 140 : IleLeuGlnPheLeuProValIleLeuAspLeuIleLeuProLeuAsnGluSerArgP : 159 :!:|||! |||! ! !! !|||||||||! !:!:|||||||||||||||||||||| LeuLeuLeuPheSerSerLysIleLeuAspSerLeuLeuProLeuAsnGluSerArgP 475546 : TTGCTTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTC : 475603 160 : roLeuHisLeuIleValPheAlaGluTyrPheIleAsnGlnGluGluTyrLeuTyrAl : 178 || ! ! !:!:::: |||||||||||||||:!!:!!:!!|||!!!||| roSerTrpSerLeuIleArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLe 475604 : CTAGCTGGTCTCTGAtacgaatagaatatttcataaacGAACAGAAATACTTTTATCT : 475660 179 : aMetLeuLeuHisGluIlePheAlaValHisLeuAlaAlaIleAlaLeuCysCysThr : 197 !! :!!:!!:!!:!!! ! ! .!!:!!! !||| !!.!! !.!!! ! ...||| uSerValIleTyrGlnThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThr 475661 : GAGCGTGATCTATCAGACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACT : 475717 198 : SerThrThrIleMetSerTyrIleLeuHisGlyCysAlaLeuLeuLysValAla{Se} : 216 ..!.!!! !.!!! ! !!:::!:! !||| !! :::|||...::::::...{||} GluAlaIlePheThrMetTrpLeuGlnHisCysIleSerLeuPheGluIleVal{Se} 475718 : GAAGCAATATTTACCATGTGGTTGCAACATTGCATaagtttatttgaaattgtt{ag} : 475774 217 : >>>> Target Intron 1 >>>> {r}TyrArgValGluAsnAlaIleGlyGl : 225 183 bp {|}||||||:!!|||!!. !||| !:! ++ ++{r}TyrArgIleGluLysLeuIleIleGl 475775 : gt.........................ag{t}TATCGTATTGAAAAACTGATTATACA : 475984 226 : u<->AspIleLeuAlaIleProSerProLysLysGluTyrLeuLeuTyrArgArgIle : 243 ! :!! ! ! !! ! !|||! !|||::: !:!! ! ! !|||!:!||| nCysAsnAlaGluProTyrValSerGlnLysArgLeuHisArgAsnSerArgLysIle 475985 : GTGCAACGCTGAGCCGTACGTTTCGCAAAAACGTTTGCACAGAAACAGCAGGAAGATT : 476041 244 : <->ValAsnAlaValIleIleHisArgArgAlaIle{Gl} >>>> Target Intr : 255 :!!|||||||||:!!!!:|||||||||!.!:!!{:!} 192 bp LeuIleAsnAlaValValMetHisArgArgValLeu{Gl}++ 476042 : CTAATTAATGCTGTGGTTATGCACAGAAGAGTATTA{CA}gt................ : 476084 256 : on 2 >>>> {u}PheIleAspValPheThrSerSerPheAlaValSerTyrAspIl : 270 {!}||| !!!: !!!.! !! ! !|||.!!:!!:!!|||..! ++{n}PheCysGluLysLeuArgIleHisPheThrLeuAlaTyrSerCy 476085 : .........ag{G}TTCTGCGAAAAATTGAGGATTCATTTCACGTTAGCGTATTCTTG : 476317 271 : eLeuIleIleIleGlyValSerSerLeuSerIleAsnLeuPhe : 284 !|||:!!|||:!!||||||! !|||:!!|||:::||||||||| sLeuLeuIleLeuGlyValIleSerValSerValAsnLeuPhe 476318 : TCTTCTTATCTTAGGTGTGATATCTGTAAgcgttaatttattt : 476361 vulgar: CbirOr289 139 284 . KQ414815.1 475545 476361 + 187 M 76 228 S 0 2 5 0 2 I 0 179 3 0 2 S 1 1 M 9 27 G 0 3 M 18 54 G 0 3 M 11 33 S 0 2 5 0 2 I 0 188 3 0 2 S 1 1 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475546 476361 187 + . gene_id 2 ; sequence CbirOr289 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 475546 475775 . + . KQ414815.1 exonerate:protein2genome:local exon 475546 475775 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 475776 475777 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 475776 475958 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 475957 475958 . + . intron_id 0 ; splice_site "ag" KQ414815.1 exonerate:protein2genome:local cds 475959 476081 . + . KQ414815.1 exonerate:protein2genome:local exon 475959 476081 . + . insertions 6 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 476082 476083 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 476082 476273 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 476272 476273 . + . intron_id 1 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 476274 476361 . + . KQ414815.1 exonerate:protein2genome:local exon 476274 476361 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475546 476361 187 + . alignment_id 2 ; Query CbirOr289 ; Align 475546 140 228 ; Align 475960 217 27 ; Align 475990 226 54 ; Align 476047 244 33 ; Align 476275 256 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr289 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 130 -> 214 Target range: 457159 -> 457411 131 : SerTyrCysCysLeuLeuCysAlaGlyIleLeuGlnPheLeuProValIleLeuAspL : 150 !!!|||||| !! !||| ! ! !! ||||||.!!!!!|||:!!:!!||||||: ThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspI 457160 : ACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACA : 457217 151 : euIleLeuProLeuAsnGluSerArgProLeuHisLeuIleValPheAlaGluTyrPh : 169 !!:!::!!|||||||||||||||||||||! !.!.||| !:!! ||||||||||| leValValProLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPh 457218 : TTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTT : 457274 170 : eIleAsnGlnGluGluTyrLeuTyrAlaMetLeuLeuHisGluIlePheAlaValHis : 188 |:!!:!!..!:!!:!!|||:!!:!! !!!::!! !||| ||| ..!:!!! eValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeu 457275 : TGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTG : 457331 189 : LeuAlaAlaIleAlaLeuCysCysThrSerThrThrIleMetSerTyrIleLeuHisG : 208 :!!||||||! !.!!||| ..!!.!..!:!! !:!!!!:!!! !!:!!||||||! IleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisV 457332 : ATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACG : 457391 209 : lyCysAlaLeuLeuLysVal : 214 !|||!.!|||!!!|||:!! alCysGlyLeuPheLysLeu 457392 : TTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr289 130 214 . KQ414815.1 457159 457411 + 177 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457160 457411 177 + . gene_id 3 ; sequence CbirOr289 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457160 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457160 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457160 457411 177 + . alignment_id 3 ; Query CbirOr289 ; Align 457160 131 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr289 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 333 -> 378 Target range: 441705 -> 441840 334 : TyrAsnAlaProTrpTyrValAlaProLeuHisThrGlnLysLeuMetLeuPheIleM : 353 ||||||:!! !!|||||| !!.!|||||| !.!!|||||||||:!:|||||||||| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 354 : etGlnArgAlaAsnValAspValThrLeuThrPheGlySerIlePheValAlaSerLe : 372 ||..!!:!::!!..:!! !! !:!!!.!.!!..!.!!||||||!.! !!!!!! etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 373 : uGluGlyPheCysSerLeu : 378 !:!!||||||! !|||:!! rLysGlyPheSerSerVal 441821 : CAAAGGTTTTTCCTCGGTA : 441840 vulgar: CbirOr289 333 378 . KQ414815.1 441705 441840 + 104 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441840 104 + . gene_id 4 ; sequence CbirOr289 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441706 441840 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441840 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441840 104 + . alignment_id 4 ; Query CbirOr289 ; Align 441706 334 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr289 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 333 -> 378 Target range: 445817 -> 445952 334 : TyrAsnAlaProTrpTyrValAlaProLeuHisThrGlnLysLeuMetLeuPheIleM : 353 ||||||:!! !!|||||| !!.!|||||| !.!!|||||||||:!:|||||||||| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 354 : etGlnArgAlaAsnValAspValThrLeuThrPheGlySerIlePheValAlaSerLe : 372 ||..!!:!::!!..:!! !! !:!!!.!.!!..!.!!||||||!.! !!!!!! etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 373 : uGluGlyPheCysSerLeu : 378 !:!!||||||! !|||:!! rLysGlyPheSerSerVal 445933 : CAAAGGTTTTTCCTCGGTA : 445952 vulgar: CbirOr289 333 378 . KQ414815.1 445817 445952 + 104 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 445952 104 + . gene_id 5 ; sequence CbirOr289 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445818 445952 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445952 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 445952 104 + . alignment_id 5 ; Query CbirOr289 ; Align 445818 334 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr289 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 134 -> 216 Target range: 471570 -> 471816 135 : LeuLeuCysAlaGlyIleLeuGlnPheLeuProValIleLeuAspLeuIleLeuProL : 154 |||:!! !::!! !||||||....!.! !|||:!!|||||||||:!!|||:!!|||| LeuIleThrSerValIleLeuSerMetSerProLeuIleLeuAspIleIleIleProL 471571 : CTCATTACTAGTGTAATACTGTCCATGTCGCCTCTTATTCTCGATATTATAATACCTC : 471628 155 : euAsnGluSerArgProLeuHisLeuIleValPheAlaGluTyrPheIleAsnGlnGl : 173 ||||| !|||||||||! !:!!!!! ! !! !!!:!:!.!! !|||||||| euAsnThrSerArgProArgTyrPheProPheThrPheAspPheIleProAsnGlnGl 471629 : TGAACACGTCACGTCCACGTTACTTTCCATTTACGTTCGATTTCATTCCCAATCAAGA : 471685 174 : uGluTyrLeuTyrAlaMetLeuLeuHisGluIlePheAlaValHisLeuAlaAlaIle : 192 |||||||!!!!! !!!!: !:!! !... !.!. ! ! !! !!.! ! ! uGluTyrPhe***ProIleThrIlePheSerGlyIleLeuCysIleCysGlyLeuAla 471686 : GGAATACTTCTAACCGATTACTATCTTTTCTGGCATATTGTGCATTTGTGGATTAGCA : 471742 193 : AlaLeuCysCysThrSerThrThrIleMetSerTyrIleLeuHisGlyCysAlaLeuL : 212 |||:!! !!!:!..! ! !:!!|||! ! !!:!!||||||! ! !!!.!|||! AlaMetIleSerSerGluGlyLeuLeuMetMetAsnValLeuHisValArgGlyLeuT 471743 : GCAATGATAAGTAGCGAGGGTCTGCTTATGATGAATGTTTTACACGTACGTGGATTGT : 471802 213 : euLysValAlaSer : 216 !!!.:!!|||!!! yrAsnIleAlaThr 471803 : ATAACATCGCTACG : 471816 vulgar: CbirOr289 134 216 . KQ414815.1 471570 471816 + 103 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471571 471816 103 + . gene_id 6 ; sequence CbirOr289 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471571 471816 . + . KQ414815.1 exonerate:protein2genome:local exon 471571 471816 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471571 471816 103 + . alignment_id 6 ; Query CbirOr289 ; Align 471571 135 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr307 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 122 -> 214 Target range: 485656 -> 485929 123 : ThrIleIlePheMetLeuIleAlaThrSerValValLeuGlyValIleSerLeuAlaP : 142 !:!|||||| :!::!!|||!.! !!|||:!!:!!:!! !:!!:!!.!!:!! | SerIleIleAlaValIleIleGlyProSerLeuLeuValLeuIleLeuGlyIle---P 485657 : AGTATTATTGCAGTAATTATCGGTCCATCGTTACTTGTGCTGATTCTTGGTATA---T : 485711 143 : heAlaSerThrIleLeuAspIleIleIleProLeuAsnGluSerArgProLeuArgLe : 161 || !!:!!:!||||||||||||:!:|||||||||||| ! !!!||||||! !! !:! heAsnAsnSerIleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIl 485712 : TTAACAACAGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGAT : 485768 162 : uProIleGluValGluTyrPheValAspGlnGlnArgTyrPheTyrAlaIleSerLeu : 180 !||||||.!. !|||:!!|||||||||||||||!:!||||||||| !!|||:!! ! eProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAla 485769 : TCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCA : 485825 181 : HisMetGlyMetThrPheTyrAlaGlyMetMetIleMetThrAlaIleThrThrIleP : 200 |||:!:! !:!: ! !! ! !||| !!!::!!:!: !::! :::. HisValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuI 485826 : CATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaa : 485885 201 : heIleAlaTyrValSerHisAsnCysAlaIlePheGluIleVal : 214 ..:::||| :!!..!|||!.!|||!.!:!:!:! !|||||| leMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIleVal 485886 : ttatggCGATAATACAGCACACCTGTGGTTTGTATACAATCGTT : 485929 vulgar: CbirOr307 122 214 . KQ414815.1 485656 485929 + 178 M 18 54 G 1 0 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485657 485929 178 + . gene_id 1 ; sequence CbirOr307 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485657 485929 . + . KQ414815.1 exonerate:protein2genome:local exon 485657 485929 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 485657 485929 178 + . alignment_id 1 ; Query CbirOr307 ; Align 485657 123 54 ; Align 485711 142 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr307 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 169 Query range: 133 -> 255 Target range: 457171 -> 457834 134 : ValLeuGlyValIleSerLeuAlaPheAlaSerThrIleLeuAspIleIleIleProL : 153 !.!|||! !:!!! !!!!||| !.!! ! !!! !:!!|||||||||:!::!!|||| AlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProL 457172 : GCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCAT : 457229 154 : euAsnGluSerArgProLeuArgLeuProIleGluValGluTyrPheValAspGlnGl : 172 |||||||||||||||||! !..!||| !:!! !!.!|||||||||||||||..!:! euAsnGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLy 457230 : TGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAA : 457286 173 : nArgTyrPheTyrAlaIleSerLeuHisMetGlyMetThrPheTyrAlaGlyMetMet : 191 !!:!|||.!.:!! !|||! ! !|||!!: !! ! !.!. !!.! ! sLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThr 457287 : AAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACC : 457343 192 : IleMetThrAlaIleThrThrIlePheIleAlaTyrValSerHisAsnCysAlaIleP : 211 ! :!:||||||! ! !:!!:!!.!!|||.!! !!||| !||| !|||!.!:!:| ThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuP 457344 : ACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGT : 457403 212 : heGluIleVal{Se} >>>> Target Intron 1 >>>> {r}TyrArgLeuGl : 219 ||:!!:!!..!{||} 303 bp {|}||||||||||| heLysLeuThr{Se}++ ++{r}TyrArgLeuGl 457404 : TCAAGCTTACT{AG}gt.........................ag{C}TATAGATTAGA : 457730 220 : uHisMetPheAspGluLysIleLeuGluMetSerLysAspIleArgGluHisIleLeu : 238 |||| !!.|||.!. ! !! !:!!! ! ! !..!! !!:!..! ! uHisSerLeuAspHisValThrSerGlnLysLeuGlySerThrLysArg------Thr 457731 : ACACTCTTTGGACCACGTTACCTCACAAAAATTGGGAAGTACCAAGAGA------ACG : 457781 239 : HisGluArgLeuIleAspAlaValHisLeuHisCysArgAlaValAspMet : 255 :!!! !|||||||||!!:||||||:!!:!!||| ! !:!||| !!!::!! TyrValArgLeuIleGluAlaValAsnIleHisArgLysAlaTyrGluLeu 457782 : TACGTGAGGCTGATTGAAGCTGTTAACATACACAGAAAAGCTTACGAGTTG : 457834 vulgar: CbirOr307 133 255 . KQ414815.1 457171 457834 + 169 M 81 243 S 0 2 5 0 2 I 0 299 3 0 2 S 1 1 M 20 60 G 2 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457172 457834 169 + . gene_id 2 ; sequence CbirOr307 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 457172 457416 . + . KQ414815.1 exonerate:protein2genome:local exon 457172 457416 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 457417 457418 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 457417 457719 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457718 457719 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457720 457834 . + . KQ414815.1 exonerate:protein2genome:local exon 457720 457834 . + . insertions 0 ; deletions 2 KQ414815.1 exonerate:protein2genome:local similarity 457172 457834 169 + . alignment_id 2 ; Query CbirOr307 ; Align 457172 134 243 ; Align 457721 216 60 ; Align 457781 238 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr307 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 133 -> 214 Target range: 481995 -> 482238 134 : ValLeuGlyValIleSerLeuAlaPheAlaSerThrIleLeuAspIleIleIleProL : 153 |||||| !:!!||| !! ! !.!.:!!||| !:!!||||||:!!|||:!!|||| ValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValProL 481996 : GTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTCCTC : 482053 154 : euAsnGluSerArgProLeuArgLeuProIleGluValGluTyrPheValAspGlnGl : 172 ||||||||!!!||| !!! !!:!!!!|||:!!..!:!!|||||||||:!!|||||||| euAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGlnGl 482054 : TAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCAGCA : 482110 173 : nArgTyrPheTyrAlaIleSerLeuHisMetGlyMetThrPheTyrAlaGlyMetMet : 191 |!:!|||! ! !|||!!!!!!|||..! !!.!.:!!||| !!.!! ! ! ! nLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAlaThr 482111 : GAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCAACG : 482167 192 : IleMetThrAlaIleThrThrIlePheIleAlaTyrValSerHisAsnCysAlaIleP : 211 |||!!:..!!.!||| !|||:!:.!!:!! !!:::!!..!||| !...::!:!:| IleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerLeuP 482168 : ATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCTTGT : 482227 212 : heGluIleVal : 214 || :!!||| heThrLeuVal 482228 : TCACCCTTGTA : 482238 vulgar: CbirOr307 133 214 . KQ414815.1 481995 482238 + 159 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481996 482238 159 + . gene_id 3 ; sequence CbirOr307 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481996 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 481996 482238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481996 482238 159 + . alignment_id 3 ; Query CbirOr307 ; Align 481996 134 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr307 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 89 -> 213 Target range: 464391 -> 464840 90 : LysTyrIlePheSerArgLeuArgTyrAspTrpAsnIleLeuLysAsnGlnThrGluP : 109 !:! :!!|||! !|||:!!|||||||||||||||! |||:!!||| ! !|||! ArgLeuLeuPheLeuArgValArgTyrAspTrpAsnThrLeuGlnAsnThrAspGluT 464392 : AGACTGCTTTTTTTACGGGTGAGATATGACTGGAACACGCTACAAAACACGGATGAAT : 464449 110 : heGluIleIleGlnLysHisAlaAspLysThrArgPheTyrThrIleIlePheMet{L : 128 :!.!.|||:!::!!|||:!!.!!!!:!...!!! !.!! !!.!! !||| !:!:{: yrAsnIleLeuLysLysTyrThrGluSerAlaThrLeuValAsnLysIleHisLeu{M 464450 : ATAATATTCTGAAAAAGTATACCGAGAGCGCTACACTTGTTAACAAAATCCACTTA{A : 464506 129 : } >>>> Target Intron 1 >>>> {eu}IleAlaThrSerValValLeuGly : 136 } 74 bp {!!} ! !! ! !!|||:!!||| ! }++ ++{et}CysPheIleProValIleLeuPhe 464507 : }gt.........................ag{TG}TGCTTCATTCCCGTTATACTGTTC : 464604 137 : ValIleSerLeuAlaPheAlaSerThrIleLeuAspIleIleIleProLeuAsnGluS : 156 :!! !! !|||! ! ! ! !! !|||||||||:!::!! ||||||||||||| IleCysLeuLeuGluValLeuProAspIleLeuAspValValAlaProLeuAsnGluS 464605 : ATCTGTTTACTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATGAAT : 464664 157 : erArgProLeuArgLeuProIleGluValGluTyrPheVal<->AspGlnGlnArgTy : 174 ||||| !!! !!:!! ! !||| !.!|||!:!|||:!! |||.....!! ! ! erArgSerHisGlnTyrLeuIleThrAlaGluPhePheIleThrAspSerSerProAs 464665 : CTCGTTCTCATCAATACTTAATTACCGCGGAATTTTTCATCACTGATAGTTCGCCGAA : 464721 175 : rPheTyrAlaIleSerLeuHisMetGlyMetThrPheTyrAlaGlyMetMetIleMet : 193 !!:! !!.!! !!!!:!! !! !! !!!:|||.!! ! !|||:!:! !! !!!: nTyrIleValThrCysValGlyThrAspIleThrLeuIleMetGlyValThrThrIle 464722 : TTATATCGTAACTTGTGTTGGTACGGATATTACTCTTATCATGGGAGTCACGACAATA : 464778 194 : ThrAlaIleThrThrIlePheIleAlaTyrValSerHisAsnCysAlaIlePheGluI : 213 ! !||| ! !|||.!! !.!! !! :!!..!|||! !||||||!!:|||:!!| IleAlaSerGluThrPheThrPheLeuLeuLeuGlnHisIleCysAlaMetPheLysI 464779 : ATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAATGTTCAAAA : 464838 214 : le : 213 || le 464839 : TC : 464840 vulgar: CbirOr307 89 213 . KQ414815.1 464391 464840 + 154 M 38 114 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 41 123 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464392 464840 154 + . gene_id 4 ; sequence CbirOr307 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 464392 464506 . + . KQ414815.1 exonerate:protein2genome:local exon 464392 464506 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 464507 464508 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 464507 464580 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 464579 464580 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 464581 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464581 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464392 464840 154 + . alignment_id 4 ; Query CbirOr307 ; Align 464392 90 114 ; Align 464583 129 123 ; Align 464709 170 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr307 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 120 -> 214 Target range: 475491 -> 475773 121 : PheTyrThrIleIlePheMetLeuIleAlaThrSerValValLeuGlyValIleSerL : 140 ||| ||| !! :!!:!:!.! ! !!..!:!!!!! !:!!|||! !| PheValGlyAsnIleValThrValLeuValTyrProThrIlePheThrMetIleLeuL 475492 : ttcgttgggaatattgtTACAGTACTGGTATACCCAACAATATTCACCATGATATTGC : 475549 141 : euAlaPheAlaSerThrIleLeuAspIleIleIleProLeuAsnGluSerArgProLe : 159 || !|||:!!|||! !||||||||| !:!::!!||||||||||||||||||||| euLeuPheSerSerLysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSe 475550 : TTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAG : 475606 160 : uArgLeuProIleGluValGluTyrPheValAspGlnGlnArgTyrPheTyrAlaIle : 178 ! !!! !! !|||...:::|||||||||:::::::!!|||!:!||||||||| !! ! rTrpSerLeuIleArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSer 475607 : CTGGTCTCTGAtacgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGC : 475663 179 : SerLeuHisMetGlyMetThrPheTyrAlaGlyMetMetIleMetThrAlaIleThrT : 198 !:!!:!!..! !:!:|||.!! ! ! ! ! ! ..!|||! ! !. ValIleTyrGlnThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluA 475664 : GTGATCTATCAGACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAG : 475723 199 : hrIlePheIleAlaTyrValSerHisAsnCysAlaIlePheGluIleVal : 214 !!||||||! ! !!:::!!..!||| ! ::::::|||||||||||| laIlePheThrMetTrpLeuGlnHisCysIleSerLeuPheGluIleVal 475724 : CAATATTTACCATGTGGTTGCAACATTGCATaagtttatttgaaattgtt : 475773 vulgar: CbirOr307 120 214 . KQ414815.1 475491 475773 + 152 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475492 475773 152 + . gene_id 5 ; sequence CbirOr307 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475492 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475492 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475492 475773 152 + . alignment_id 5 ; Query CbirOr307 ; Align 475492 121 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr307 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 130 -> 220 Target range: 471561 -> 471831 131 : ThrSerValValLeuGlyValIleSerLeuAlaPheAlaSerThrIleLeuAspIleI : 150 |||!:!:!!:!!:!! ! !:!!! !|||:!!.!.:!! !! !||||||||||||| ThrAsnLeuLeuIleThrSerValIleLeuSerMetSerProLeuIleLeuAspIleI 471562 : ACGAATCTACTCATTACTAGTGTAATACTGTCCATGTCGCCTCTTATTCTCGATATTA : 471619 151 : leIleProLeuAsnGluSerArgProLeuArgLeuProIleGluValGluTyrPheVa : 169 |||||||||||||| !|||||||||! ! !!!!|||.!! ! !!!!:!:!.!! leIleProLeuAsnThrSerArgProArgTyrPheProPheThrPheAspPheIlePr 471620 : TAATACCTCTGAACACGTCACGTCCACGTTACTTTCCATTTACGTTCGATTTCATTCC : 471676 170 : lAspGlnGlnArgTyrPheTyrAlaIleSerLeuHisMetGlyMetThrPheTyrAla : 188 !:!!|||:!!..!||||||!! !!|||!!!:!! ! |||!!: !! ! !..! oAsnGlnGluGluTyrPhe***ProIleThrIlePheSerGlyIleLeuCysIleCys 471677 : CAATCAAGAGGAATACTTCTAACCGATTACTATCTTTTCTGGCATATTGTGCATTTGT : 471733 189 : GlyMetMetIleMetThrAlaIleThrThrIlePheIleAlaTyrValSerHisAsnC : 208 |||:!: !|||! !::!! ! ! !:!:.!!!!: ! !!|||! !||| GlyLeuAlaAlaMetIleSerSerGluGlyLeuLeuMetMetAsnValLeuHisValA 471734 : GGATTAGCAGCAATGATAAGTAGCGAGGGTCTGCTTATGATGAATGTTTTACACGTAC : 471793 209 : ysAlaIlePheGluIleValSerTyrArgLeuGluHis : 220 !!!.!:!:!:!.!.|||!.!!!!! !||| !||| rgGlyLeuTyrAsnIleAlaThr***ValLeuLeuHis 471794 : GTGGATTGTATAACATCGCTACGTGAGTACTATTACAT : 471831 vulgar: CbirOr307 130 220 . KQ414815.1 471561 471831 + 119 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471562 471831 119 + . gene_id 6 ; sequence CbirOr307 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471562 471831 . + . KQ414815.1 exonerate:protein2genome:local exon 471562 471831 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471562 471831 119 + . alignment_id 6 ; Query CbirOr307 ; Align 471562 131 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr307 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 335 -> 383 Target range: 441705 -> 441849 336 : TyrAsnMetGluTrpTyrAlaAlaProLeuTrpLeuGlnLysLeuIleLeuPheIleM : 355 |||||| ||||||..!!.!|||||| ! !|||||||||:!!|||||||||| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 356 : etGlnLysSerIleIleHisAlaThrLeuLysAlaGlyGlyLeuPheGluGlySerLe : 374 ||..!||||||! |||! ..!! !:!!!!. !..!|||:!!|||! !!!!! etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 375 : uGluGlyPheAlaArgLeuIleSerMet : 383 !:!!||||||:!! !:!!|||!!!:!: rLysGlyPheSerSerValIleCysLeu 441821 : CAAAGGTTTTTCCTCGGTAATTTGTCTT : 441849 vulgar: CbirOr307 335 383 . KQ414815.1 441705 441849 + 109 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441849 109 + . gene_id 7 ; sequence CbirOr307 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441706 441849 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441849 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441849 109 + . alignment_id 7 ; Query CbirOr307 ; Align 441706 336 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr307 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 335 -> 383 Target range: 445817 -> 445961 336 : TyrAsnMetGluTrpTyrAlaAlaProLeuTrpLeuGlnLysLeuIleLeuPheIleM : 355 |||||| ||||||..!!.!|||||| ! !|||||||||:!!|||||||||| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 356 : etGlnLysSerIleIleHisAlaThrLeuLysAlaGlyGlyLeuPheGluGlySerLe : 374 ||..!||||||! |||! ..!! !:!!!!. !..!|||:!!|||! !!!!! etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 375 : uGluGlyPheAlaArgLeuIleSerMet : 383 !:!!||||||:!! !:!!|||!!!:!: rLysGlyPheSerSerValIleCysLeu 445933 : CAAAGGTTTTTCCTCGGTAATTTGTCTT : 445961 vulgar: CbirOr307 335 383 . KQ414815.1 445817 445961 + 109 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 445961 109 + . gene_id 8 ; sequence CbirOr307 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445818 445961 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445961 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 445961 109 + . alignment_id 8 ; Query CbirOr307 ; Align 445818 336 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr303INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 190 Query range: 101 -> 228 Target range: 457144 -> 457825 102 : LeuLeuSerLeuSerIleIleThrSerCysValPheTyrAlaIlePheGluAlaMetP : 121 :!!:!!!!!:!!|||! ! ! !.!!...:!! !! !.!!! !!.:!! !.!.| MetIleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheP 457145 : ATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTC : 457202 122 : roIleIleLeuAspMetIlePheProLeuAsnGluThrArgProArgGluIleHisAl : 140 |||||:!!||||||!!::!: !!||||||||||||:!!|||||| !!|||:!!:!! roIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrLe 457203 : CGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCT : 457259 141 : aLeuThrGluTyrPheIleAspGluArgThrTyrPheCysProIleLeuCysHisTrp : 159 ! !.!!|||||||||:!!||| !!:!! !|||.!. ! !|||:!!...||| uThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIle 457260 : TACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATT : 457316 160 : LeuIleGlyLeuMetLeuGlyAlaTyrValValAlaValThrCysThrLeuHisLeuV : 179 :!!! !!|||:!!:!!!.!||| !..!:!!.!!!.!!.! :!!|||! !:!!. IleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleT 457317 : ATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAA : 457376 180 : alTyrMetGluHisIleCysGlyLeuLeuLysValAla{As} >>>> Target In : 192 .! !!:!: !|||:!!|||||||||!!!|||:!!.!!{!:} 303 hrAsnValLeuHisValCysGlyLeuPheLysLeuThr{Se}++ 457377 : CGAACGTACTGCACGTTTGTGGATTGTTCAAGCTTACT{AG}gt.............. : 457419 193 : tron 1 >>>> {n}TyrArgIleGluHisSerLeuAspGluCysAlaLeuCysAsp : 206 bp {!}||||||:!!|||||||||||||||.!. !.! !! .!. ++{r}TyrArgLeuGluHisSerLeuAspHis---ValThrSerGln 457420 : ...........ag{C}TATAGATTAGAACACTCTTTGGACCAC---GTTACCTCACAA : 457757 207 : SerThrHisGlyLysAsnArgAlaIleGlnAsnIleThrAlaAlaValAspIleHisA : 226 !.! ! .!!! !!.|||.!! ! !!..:!:! !! !||||||:!!||||||| LysLeuGlySerThrLysArgThrTyrValArgLeuIleGluAlaValAsnIleHisA 457758 : AAATTGGGAAGTACCAAGAGAACGTACGTGAGGCTGATTGAAGCTGTTAACATACACA : 457817 227 : rgLysAla : 228 |||||||| rgLysAla 457818 : GAAAAGCT : 457825 vulgar: CbirOr303INT 101 228 . KQ414815.1 457144 457825 + 190 M 90 270 S 0 2 5 0 2 I 0 299 3 0 2 S 1 1 M 9 27 G 1 0 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457145 457825 190 + . gene_id 1 ; sequence CbirOr303INT ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 457145 457416 . + . KQ414815.1 exonerate:protein2genome:local exon 457145 457416 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 457417 457418 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 457417 457719 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457718 457719 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457720 457825 . + . KQ414815.1 exonerate:protein2genome:local exon 457720 457825 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457145 457825 190 + . alignment_id 1 ; Query CbirOr303INT ; Align 457145 102 270 ; Align 457721 193 27 ; Align 457748 203 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr303INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 87 -> 187 Target range: 481926 -> 482226 88 : IleMetArgGlnTyrSerIleAlaGlyGluGlnIleThrIleLeuLeuSerLeuSerI : 107 ||| |||..!|||!:!|||:::... :::::: !! !| IleHisArgMetTyrAsnIleSerSerIle***Asn***LysAsnIleThrAlaLeuI 481927 : ATACATAGAATGTATAATATAAGcagtatttaaaattagaaaaatattacagcGTTAA : 481984 108 : leIleThrSerCysValPheTyrAlaIlePheGluAlaMetProIleIleLeuAspMe : 126 || ! !!||| :!!.!. !:!:! !.!. ! ! !.!!:!!||||||:! leTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspVa 481985 : TTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGT : 482041 127 : tIlePheProLeuAsnGluThrArgProArgGluIleHisAlaLeuThrGluTyrPhe : 145 :||| !!|||||||||||||||||| !!!.!:!!.!!! !.!! !! !||||||||| lIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPhe 482042 : CATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTC : 482098 146 : IleAspGluArgThrTyrPheCysProIleLeuCysHisTrpLeuIleGlyLeuMetL : 165 ||||||:!!!:!! !|||! ! !||| !! !||| !! !.!!..!!!!:!:: IleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuV 482099 : ATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCG : 482158 166 : euGlyAlaTyrValValAlaValThrCysThrLeuHisLeuValTyrMetGluHisIl : 184 !!! !||| :!!:!!!.!! !! ! |||||| !:!!:!!!:::!:|||||| alValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAl 482159 : TAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGC : 482215 185 : eCysGlyLeu : 187 !....!!||| aAlaSerLeu 482216 : TGCAAGCTTG : 482226 vulgar: CbirOr303INT 87 187 . KQ414815.1 481926 482226 + 109 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481927 482226 109 + . gene_id 2 ; sequence CbirOr303INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481927 482226 . + . KQ414815.1 exonerate:protein2genome:local exon 481927 482226 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481927 482226 109 + . alignment_id 2 ; Query CbirOr303INT ; Align 481927 88 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr303INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 303 -> 351 Target range: 490182 -> 490326 304 : GluLeuPheAsnThrThrTyrAsnValGlnTrpTyrThrAlaProIleLysIleGlnL : 323 .!.:!!.!!|||! ! ! !!!:!|||.!.|||||||||||||||||| ||||||| AsnIleLeuAsnArgCysAsnSerValAsnTrpTyrThrAlaProIleAlaIleGlnL 490183 : AACATACTTAATAGATGCAACAGCGTGAATTGGTACACGGCTCCAATTGCCATACAAA : 490240 324 : ysLeuLeuLeuPheValMetGlnSerThrThrLysSerTyrPheLeuAsnIleGlyLy : 342 |||||||||||.!!:!!||||||!:!|||! !::!!:!! !! :!!!..:!! ! ysLeuLeuLeuIleIleMetGlnAsnThrIleArgAsnSerSerIleThrLeuPheGl 490241 : AATTGCTGTTGATCATTATGCAAAATACTATACGAAATTCTTCAATAACACTCTTCGG : 490297 343 : sLeuValIleIleSerIleGluGlyPhe : 351 !:!! !||| |||.!!!!:|||||| yMetTyrIleSerSerPheAspGlyPhe 490298 : AATGTATATATCGTCTTTCGATGGTTTC : 490326 vulgar: CbirOr303INT 303 351 . KQ414815.1 490182 490326 + 109 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 490183 490326 109 + . gene_id 3 ; sequence CbirOr303INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 490183 490326 . + . KQ414815.1 exonerate:protein2genome:local exon 490183 490326 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 490183 490326 109 + . alignment_id 3 ; Query CbirOr303INT ; Align 490183 304 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr303INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 102 -> 190 Target range: 464573 -> 464840 103 : LeuSerLeuSerIleIleThrSerCysValPheTyrAlaIlePheGluAlaMetProI : 122 :!! !!:!!!!!.!!||| !! ! :!!||| !..!:!!.!!|||!.!:!!||| IleProValCysPheIleProValIleLeuPheIleCysLeuLeuGluValLeuProA 464574 : ATTCCAGTGTGCTTCATTCCCGTTATACTGTTCATCTGTTTACTCGAAGTATTGCCAG : 464631 123 : leIleLeuAspMetIlePheProLeuAsnGluThrArgProArgGluIleHisAlaLe : 141 !|||||||||:!!:!! ||||||||||||:!!||| !!!.!:!! ! ! spIleLeuAspValValAlaProLeuAsnGluSerArgSerHisGlnTyrLeuIleTh 464632 : ATATTCTCGACGTGGTTGCGCCCCTCAATGAATCTCGTTCTCATCAATACTTAATTAC : 464688 142 : uThrGluTyrPheIleAspGluArgThrTyrPheCysProIleLeuCysHisTrpLeu : 160 !.!!|||!:!|||||| !!!:!!!:!! !! ! !:!! !||| ! ! ! rAlaGluPhePheIleThrAspSerSerProAsnTyrIleValThrCysValGlyThr 464689 : CGCGGAATTTTTCATCACTGATAGTTCGCCGAATTATATCGTAACTTGTGTTGGTACG : 464745 161 : <->IleGlyLeuMetLeuGlyAlaTyrValValAlaValThrCysThrLeuHisLeuV : 179 ||| !|||!!::!!|||!.! ..!:!! !!.!:!! |||!!! !!!!: AspIleThrLeuIleMetGlyValThrThrIleIleAlaSerGluThrPheThrPheL 464746 : GATATTACTCTTATCATGGGAGTCACGACAATAATTGCCTCCGAAACGTTCACTTTTT : 464805 180 : alTyrMetGluHisIleCysGlyLeuLeuLysVal : 190 !!! :!!:!!|||||||||!.!:!!!!!|||:!! euLeuLeuGlnHisIleCysAlaMetPheLysIle 464806 : TGTTGCTGCAACATATCTGCGCAATGTTCAAAATC : 464840 vulgar: CbirOr303INT 102 190 . KQ414815.1 464573 464840 + 104 M 58 174 G 0 3 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464574 464840 104 + . gene_id 4 ; sequence CbirOr303INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464574 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464574 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464574 464840 104 + . alignment_id 4 ; Query CbirOr303INT ; Align 464574 103 174 ; Align 464751 161 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr303INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 141 -> 200 Target range: 478638 -> 478815 142 : ThrGluTyrPheIleAspGluArgThrTyrPheCysProIleLeuCysHisTrpLeuI : 161 |||||||||||||||||||||::: |||||| |||::: ||| !! !: ThrGluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValTyrL 478639 : ACGGAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGTACC : 478696 162 : leGlyLeuMetLeuGlyAlaTyrValValAlaValThrCysThrLeuHisLeuValTy : 180 !:..!|||!!::!! !||| !||| !!.!!.!||| :!!! ! :!!:!!!: euSerLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMetTr 478697 : TGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTATGTG : 478753 181 : rMetGluHisIleCysGlyLeuLeuLysValAlaAsnTyrArgIleGluHisSerLeu : 199 :|||! !|||! ! !||||||! !!!.:!! !!..|||!.! :!!...! !:!! pMetValHisThrIleGlyLeuTyrAsnIleIleArgTyrAsnGlnGlnArgLeuIle 478754 : GATGGTGCATACTATCGGCTTGTATAATATCATAAGGTATAATCAGCAAAGATTGATC : 478810 200 : Asp : 200 ||| Asp 478811 : GAT : 478815 vulgar: CbirOr303INT 141 200 . KQ414815.1 478638 478815 + 100 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478639 478815 100 + . gene_id 5 ; sequence CbirOr303INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478639 478815 . + . KQ414815.1 exonerate:protein2genome:local exon 478639 478815 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478639 478815 100 + . alignment_id 5 ; Query CbirOr303INT ; Align 478639 142 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr306 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 249 Query range: 87 -> 257 Target range: 456822 -> 457843 88 : PheLysTyrIlePheSerArgLeuArgTyrAspTrpAsnMetLeuGlnAsnGlnLysG : 107 .!.::! ! |||!:!..!!.!:!! ! !!||||||!!. |||:!!|||..!:!!| IleArgGluIleTyrAspAsnIleAlaAspAspTrpLysSerLeuLysAsnMetGluG 456823 : ATACGGGAGATTTACGACAATATCGCTGACGATTGGAAATCATTGAAGAACATGGAAG : 456880 108 : luPheAspIleIleGlnLysTyrAlaAspArgThrArgPheHisThrIleLeuPheTh : 126 ||.!!!::||||||:::|||||||||:!! !! !||| !|||:!! !.!..! luIleGluIleIleArgLysTyrAlaAsnGlyGlyArgArgPheThrLeuAlaIleAl 456881 : AAATCGagattattcgaaaatatgcGAACGGTGGCAGGAGATTTACACTTGCAATAGC : 456937 127 : r{L} >>>> Target Intron 1 >>>> {eu}LeuAlaLeuSerIleSerLeu : 134 !{:} 214 bp {!!}! !.!!! !!!! !:!!||| a{I}++ ++{le}SerThrTyrCysGlyAlaLeu 456938 : A{A}gt.........................ag{TT}TCTACTTATTGTGGCGCACTG : 457175 135 : GlyIleIleValLeuCysSerValProSerLeuLeuAspIleIleIleProLeuAsnG : 154 ! !|||! !..!||| ! !!|||! !||||||||||||:!::!!|||||||||| ValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnG 457176 : GTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACG : 457235 155 : luSerArgProSerTrpLeuProIleValAlaGluTyrPheValAspGlnGlnArgTy : 173 |||||||||||!!! !||| !:!!..!||||||||||||||||||..!:!!!:!|| luSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTy 457236 : AATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTA : 457292 174 : rPheTyrAlaIleLeuIleHisIlePheIleValValTyrAlaGlySerMetAlaIle : 192 |.!.:!! !|||:!! ||||||.!!! !:!! !!.!:!!! .!!:!! rMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeu 457293 : TATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTA : 457349 193 : AlaSerValAlaGlyMetMetLeuGlyTyrValLeuHisAsnCysAlaIlePheLysI : 212 .!!:!! !! !..!:!::!::!! ! !!||||||||| !|||!.!:!:||||||: ThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysL 457350 : ACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGC : 457409 213 : leAla{Se} >>>> Target Intron 2 >>>> {r}TyrArgIleGluHisIl : 220 !!.!!{||} 303 bp {|}||||||:!!|||||| euThr{Se}++ ++{r}TyrArgLeuGluHisSe 457410 : TTACT{AG}gt.........................ag{C}TATAGATTAGAACACTC : 457736 221 : ePheAspGluLysIleLeuGlnMetSerLysThrIleGlyGlnTyrValLeuTyrGlu : 239 !!!.|||.!. ! !! !||| ||| ! !.!! ! ! !|||! ! rLeuAspHisValThrSerGln------LysLeuGlySerThrLysArgThrTyrVal 457737 : TTTGGACCACGTTACCTCACAA------AAATTGGGAAGTACCAAGAGAACGTACGTG : 457787 240 : ArgLeuIleHisAlaValHisLeuHisArgArgAlaValAspLeuThrAsnAsp : 257 |||||||||.!.||||||:!!:!!||||||!:!||| !!!:|||..! !||| ArgLeuIleGluAlaValAsnIleHisArgLysAlaTyrGluLeuValPheAsp 457788 : AGGCTGATTGAAGCTGTTAACATACACAGAAAAGCTTACGAGTTGGTATTCGAT : 457843 vulgar: CbirOr306 87 257 . KQ414815.1 456822 457843 + 249 M 39 117 S 0 1 5 0 2 I 0 210 3 0 2 S 1 2 M 86 258 S 0 2 5 0 2 I 0 299 3 0 2 S 1 1 M 13 39 G 2 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 456823 457843 249 + . gene_id 1 ; sequence CbirOr306 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 456823 456940 . + . KQ414815.1 exonerate:protein2genome:local exon 456823 456940 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 456941 456942 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 456941 457154 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457153 457154 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457155 457416 . + . KQ414815.1 exonerate:protein2genome:local exon 457155 457416 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 457417 457418 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 457417 457719 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 457718 457719 . + . intron_id 1 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457720 457843 . + . KQ414815.1 exonerate:protein2genome:local exon 457720 457843 . + . insertions 0 ; deletions 2 KQ414815.1 exonerate:protein2genome:local similarity 456823 457843 249 + . alignment_id 1 ; Query CbirOr306 ; Align 456823 88 117 ; Align 457157 128 258 ; Align 457721 215 39 ; Align 457760 230 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr306 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 191 Query range: 143 -> 256 Target range: 485719 -> 486534 144 : SerLeuLeuAspIleIleIleProLeuAsnGluSerArgProSerTrpLeuProIleV : 163 |||:!!|||||||||:!:|||||||||||| ! !!!|||||| !! !:!!|||||| SerIleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleA 485720 : AGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAA : 485777 164 : alAlaGluTyrPheValAspGlnGlnArgTyrPheTyrAlaIleLeuIleHisIlePh : 182 !:!!|||:!!|||||||||||||||!:!||||||||| !!||| ! !|||:!! ! snSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValVa 485778 : ACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGT : 485834 183 : eIleValValTyrAlaGlySerMetAlaIleAlaSerValAlaGlyMetMetLeuGly : 201 !:!! !!||| ! !|||:!!!!:!.!:!! !|||... :::::::::..! lLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAla 485835 : TCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCG : 485891 202 : TyrValLeuHisAsnCys{A} >>>> Target Intron 1 >>>> {la}IleP : 210 :!!! !|||!.!|||{!} 476 bp {.!}||| IleIleGlnHisThrCys{V}++ --{al}IleH 485892 : ATAATACAGCACACCTGT{G}gt.........................tt{TT}ATTC : 486394 211 : heLysIleAlaSerTyrArgIleGluHisIlePheAspGluLysIleLeuGlnMetSe : 229 ! !.!!..!||||||||||||!!:|||! |||! !! !!!.|||! ! !:!:|| isLeuPheCysSerTyrArgIleAspHisThrPheValAlaAsnIleProGlyLeuSe 486395 : ACTTATTCTGCAGCTATCGTATAGATCACACGTTTGTTGCAAACATACCAGGACTTTC : 486451 230 : rLysThrIleGlyGlnTyrValLeuTyrGluArgLeuIleHisAlaValHisLeuHis : 248 | .!! ! !!::! !:!!:!!:!!..!!:!:!!:!! !|||:!!|||||| rProAlaGluArgArgValLeuIleHisArgLysIleValSerLeuValAsnLeuHis 486452 : TCCTGCGGAAAGGAGAGTTCTAATTCACAGAAAAATAGTCTCGCTCGTGAATTTGCAC : 486508 249 : ArgArgAlaValAspLeuThrAsn : 256 !:!|||!.! !!!:|||..!::! LysArgValLysGluLeuValSer 486509 : AAAAGAGTCAAGGAGTTAGTATCC : 486534 vulgar: CbirOr306 143 256 . KQ414815.1 485719 486534 + 191 M 64 192 S 0 1 5 0 2 I 0 472 3 0 2 S 1 2 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485720 486534 191 + . gene_id 2 ; sequence CbirOr306 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 485720 485912 . + . KQ414815.1 exonerate:protein2genome:local exon 485720 485912 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 485913 485914 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 485913 486388 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 486387 486388 . + . intron_id 0 ; splice_site "TT" KQ414815.1 exonerate:protein2genome:local cds 486389 486534 . + . KQ414815.1 exonerate:protein2genome:local exon 486389 486534 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485720 486534 191 + . alignment_id 2 ; Query CbirOr306 ; Align 485720 144 192 ; Align 486391 209 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr306 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 88 -> 212 Target range: 464391 -> 464840 89 : LysTyrIlePheSerArgLeuArgTyrAspTrpAsnMetLeuGlnAsnGlnLysGluP : 108 !:! :!!|||! !|||:!!|||||||||||||||! !||||||||| ! ! |||! ArgLeuLeuPheLeuArgValArgTyrAspTrpAsnThrLeuGlnAsnThrAspGluT 464392 : AGACTGCTTTTTTTACGGGTGAGATATGACTGGAACACGCTACAAAACACGGATGAAT : 464449 109 : heAspIleIleGlnLysTyrAlaAspArgThrArgPheHisThrIleLeuPheThr{L : 127 :!:!!|||:!::!!||||||.!!!!:!!!.!!! !.!! !!.!! !:!! ! !{: yrAsnIleLeuLysLysTyrThrGluSerAlaThrLeuValAsnLysIleHisLeu{M 464450 : ATAATATTCTGAAAAAGTATACCGAGAGCGCTACACTTGTTAACAAAATCCACTTA{A : 464506 128 : } >>>> Target Intron 1 >>>> {eu}LeuAlaLeuSerIleSerLeuGly : 135 } 74 bp {!!}! ! !:!! !!:!!! !||| ! }++ ++{et}CysPheIleProValIleLeuPhe 464507 : }gt.........................ag{TG}TGCTTCATTCCCGTTATACTGTTC : 464604 136 : IleIleValLeuCysSerValProSerLeuLeuAspIleIleIleProLeuAsnGluS : 155 ||| !:!!||| !:!!|||..!:!!||||||:!::!! ||||||||||||| IleCysLeuLeuGluValLeuProAspIleLeuAspValValAlaProLeuAsnGluS 464605 : ATCTGTTTACTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATGAAT : 464664 156 : erArgProSerTrpLeuProIleValAlaGluTyrPheVal<->AspGlnGlnArgTy : 173 ||||| !! ! ! ! !|||..!||||||!:!|||:!! |||.....!! ! ! erArgSerHisGlnTyrLeuIleThrAlaGluPhePheIleThrAspSerSerProAs 464665 : CTCGTTCTCATCAATACTTAATTACCGCGGAATTTTTCATCACTGATAGTTCGCCGAA : 464721 174 : rPheTyrAlaIleLeuIleHisIlePheIleValValTyrAlaGlySerMetAlaIle : 192 !!:! !!.!! !! !:!! !! !|||..!:!! ! !||| !! !.!!||| nTyrIleValThrCysValGlyThrAspIleThrLeuIleMetGlyValThrThrIle 464722 : TTATATCGTAACTTGTGTTGGTACGGATATTACTCTTATCATGGGAGTCACGACAATA : 464778 193 : AlaSerValAlaGlyMetMetLeuGlyTyrValLeuHisAsnCysAlaIlePheLysI : 212 !:!! !! ! !.!.! !!! !! :!!! !|||! !||||||!!:||||||| IleAlaSerGluThrPheThrPheLeuLeuLeuGlnHisIleCysAlaMetPheLysI 464779 : ATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAATGTTCAAAA : 464838 213 : le : 212 || le 464839 : TC : 464840 vulgar: CbirOr306 88 212 . KQ414815.1 464391 464840 + 156 M 38 114 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 41 123 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464392 464840 156 + . gene_id 3 ; sequence CbirOr306 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 464392 464506 . + . KQ414815.1 exonerate:protein2genome:local exon 464392 464506 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 464507 464508 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 464507 464580 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 464579 464580 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 464581 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464581 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464392 464840 156 + . alignment_id 3 ; Query CbirOr306 ; Align 464392 89 114 ; Align 464583 128 123 ; Align 464709 169 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr306 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 136 -> 214 Target range: 471582 -> 471816 137 : IleValLeuCysSerValProSerLeuLeuAspIleIleIleProLeuAsnGluSerA : 156 :!!:!!|||! !! ! !||| !:!!|||||||||||||||||||||||| !|||| ValIleLeuSerMetSerProLeuIleLeuAspIleIleIleProLeuAsnThrSerA 471583 : GTAATACTGTCCATGTCGCCTCTTATTCTCGATATTATAATACCTCTGAACACGTCAC : 471640 157 : rgProSerTrpLeuProIleValAlaGluTyrPheValAspGlnGlnArgTyrPheTy : 175 ||||| !!!::!!!|||.!!..! !!!:!:!.!! !:!!|||:!!..!||||||!! rgProArgTyrPheProPheThrPheAspPheIleProAsnGlnGluGluTyrPhe** 471641 : GTCCACGTTACTTTCCATTTACGTTCGATTTCATTCCCAATCAAGAGGAATACTTCTA : 471697 176 : rAlaIleLeuIleHisIlePheIleValValTyrAlaGlySerMetAlaIleAlaSer : 194 !!||| !||| ! ! !|||:!! ! !..!|||! ! |||!!: !||| *ProIleThrIlePheSerGlyIleLeuCysIleCysGlyLeuAlaAlaMetIleSer 471698 : ACCGATTACTATCTTTTCTGGCATATTGTGCATTTGTGGATTAGCAGCAATGATAAGT : 471754 195 : ValAlaGlyMetMetLeuGlyTyrValLeuHisAsnCysAlaIlePheLysIleAlaS : 214 !! !|||:!!:!::!! ! !!||||||||| !!!.!:!:!:!!!.||||||! SerGluGlyLeuLeuMetMetAsnValLeuHisValArgGlyLeuTyrAsnIleAlaT 471755 : AGCGAGGGTCTGCTTATGATGAATGTTTTACACGTACGTGGATTGTATAACATCGCTA : 471814 215 : er : 214 !! hr 471815 : CG : 471816 vulgar: CbirOr306 136 214 . KQ414815.1 471582 471816 + 135 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471583 471816 135 + . gene_id 4 ; sequence CbirOr306 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471583 471816 . + . KQ414815.1 exonerate:protein2genome:local exon 471583 471816 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471583 471816 135 + . alignment_id 4 ; Query CbirOr306 ; Align 471583 137 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr306 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 123 -> 212 Target range: 475503 -> 475770 124 : LeuPheThrLeuLeuAlaLeuSerIleSerLeuGlyIleIleValLeuCysSerValP : 143 ::: !|||:!!|||!.!! ! !!! !! !!!! !!!:|||:!!||| !! ! ! IleValThrValLeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerS 475504 : attgtTACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGT : 475561 144 : roSerLeuLeuAspIleIleIleProLeuAsnGluSerArgProSerTrpLeuProIl : 162 !!!.!:!!|||||| !:!::!!|||||||||||||||||||||||||||! !! !|| erLysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIl 475562 : CTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAt : 475618 163 : eValAlaGluTyrPheValAspGlnGlnArgTyrPheTyrAlaIleLeuIleHisIle : 181 | |||||||||:::::::!!|||!:!||||||||| !! !:!!|||:!! eArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGln 475619 : acgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAG : 475675 182 : PheIleValValTyrAlaGlySerMetAlaIleAlaSerValAlaGlyMetMetLeuG : 201 !:!!..!:!! ! ! !.!!! .!! !!.!:!!..!! !!.!!!:.!. ! ThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrM 475676 : ACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCA : 475735 202 : lyTyrValLeuHisAsnCysAlaIlePheLysIle : 212 !!:::!!! !||| ! ::::::|||:::||| etTrpLeuGlnHisCysIleSerLeuPheGluIle 475736 : TGTGGTTGCAACATTGCATaagtttatttgaaatt : 475770 vulgar: CbirOr306 123 212 . KQ414815.1 475503 475770 + 135 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475504 475770 135 + . gene_id 5 ; sequence CbirOr306 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475504 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475504 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475504 475770 135 + . alignment_id 5 ; Query CbirOr306 ; Align 475504 124 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr306 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 132 -> 212 Target range: 481992 -> 482235 133 : SerLeuGlyIleIleValLeuCysSerValProSer<->LeuLeuAspIleIleIleP : 151 |||:!! !|||:!::!!|||||| !:!! !!||| :!!||||||:!!|||:!!| SerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValP 481993 : TCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTC : 482050 152 : roLeuAsnGluSerArgProSerTrpLeuProIleValAlaGluTyrPheValAspGl : 170 |||||||||||!!!||| !! ! !!!|||:!! ! !|||||||||:!!||||| roLeuAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGl 482051 : CTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCA : 482107 171 : nGlnArgTyrPheTyrAlaIleLeuIleHisIlePheIleValValTyrAlaGlySer : 189 ||||!:!|||! ! !||| !.!!||| !::.!! ! !! !!.!! !:!! nGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAla 482108 : GCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCA : 482164 190 : MetAlaIleAlaSerValAlaGlyMetMetLeuGlyTyrValLeuHisAsnCysAlaI : 209 ! ! !|||!.!.!!:!!! ! !:!!!!::!! !!:::!! !||| !...::!: ThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerL 482165 : ACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCT : 482224 210 : lePheLysIle : 212 !:|||! :!! euPheThrLeu 482225 : TGTTCACCCTT : 482235 vulgar: CbirOr306 132 212 . KQ414815.1 481992 482235 + 123 M 12 36 G 0 3 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481993 482235 123 + . gene_id 6 ; sequence CbirOr306 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481993 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481993 482235 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481993 482235 123 + . alignment_id 6 ; Query CbirOr306 ; Align 481993 133 36 ; Align 482032 145 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr306 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 323 -> 387 Target range: 487005 -> 487194 324 : IleSerThrAsnValPheHisThrAlaTyrAsnThrGluTrpTyrAlaAlaProLeuT : 343 ||| ||||||..!.!!||| !||||||:!!||||||||| ! !|||:!! IlePheThrAsnThrIleHis---ArgTyrAsnSerGluTrpTyrArgIleProValA 487006 : atctttACGAACACAATTCAC---AGGTACAATTCAGAATGGTACAGAATCCCTGTAG : 487060 344 : rpLeuGlnLysLeuIleLeuValIleLeuGlnArgSerSerLeuLysSerThrLeuIl : 362 ! ||||||::::::|||:!!:!::!!|||!.!|||! ! ! ! ..!! !:!!:! laGluGlnLysValLeuLeuLeuLeuMetGlnAsnSerLeuLysAspAspMetIleLe 487061 : CGGAacaaaaagtattattacTCCTGATGCAAAATAGTTTAAAAGATGATATGATCCT : 487117 363 : eAlaGlyGlyIleValAspAlaSerLeuGluGlyPheAlaLysLeuMetSerMetSer : 381 ! !|||||||||:!! !||||||!!!:!!||||||:!! !:!!! ... ::: uLeuGlyGlyIleIleProAlaSerPheGlnGlyPheSerLeuValAsnGlyGluThr 487118 : ACTTGGCGGAATTATTCCTGCATCTTTCCAGGGATTTTCACTGGTAAACGgggaaacg : 487174 382 : MetSerTyrValMetPhe : 387 ::: :::::: ||| IlePhePheIleProPhe 487175 : atatttttcattcctttt : 487194 vulgar: CbirOr306 323 387 . KQ414815.1 487005 487194 + 113 M 7 21 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 487006 487194 113 + . gene_id 7 ; sequence CbirOr306 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 487006 487194 . + . KQ414815.1 exonerate:protein2genome:local exon 487006 487194 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 487006 487194 113 + . alignment_id 7 ; Query CbirOr306 ; Align 487006 324 21 ; Align 487027 332 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr306 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 287 -> 333 Target range: 468630 -> 468768 288 : LeuAlaProLeuAsnAspValLeuGluLeuLeuLeuSerCysGlyValLeuIlePheG : 307 :!! ! !!:!!:!!||| !! !!!:|||! !! !!:! !:!!|||!!: | MetLeuThrMetAspAspPheGluAspLeuCysArgAsnIlePheLeuLeuMetGlyG 468631 : ATGCTAACAATGGACGACTTCGAAGATTTATGTCGTAACATATTCCTACTAATGGGAC : 468688 308 : lnLeuTyrTyrMetPheIleIleAsnTyrValGlyGlnAspIleIleAsnIleSerTh : 326 ||||| !|||:::|||||||||||||||:::|||||||||:!!:!!||| !!:!!. lnLeuGlyTyrLeuPheIleIleAsnTyrMetGlyGlnAspLeuValAsnHisAsnAs 468689 : AGCTTGGTtacttatttataattaattacatgGGACAGGATCTAGTCAATCACAATAA : 468745 327 : rAsnValPheHisThrAlaTyr : 333 !.!.||||||!!.||||||||| nGluValPheGlnThrAlaTyr 468746 : CGAGGTTTTCCAAACAGCGTAT : 468768 vulgar: CbirOr306 287 333 . KQ414815.1 468630 468768 + 103 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 468631 468768 103 + . gene_id 8 ; sequence CbirOr306 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 468631 468768 . + . KQ414815.1 exonerate:protein2genome:local exon 468631 468768 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 468631 468768 103 + . alignment_id 8 ; Query CbirOr306 ; Align 468631 288 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr304CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 179 Query range: 133 -> 212 Target range: 457174 -> 457411 134 : LeuGlyLeuLeuThrLeuGlyCysValProArgIleLeuAspIleIleMetProLeuA : 153 |||! !:!! !|||||| ! ! !!|||! !:!!|||||||||:!::!:||||||| LeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuA 457175 : CTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGA : 457232 154 : snGluSerArgProArgGlnLeuProIleIleValGluTyrPheIleAspGluGluTh : 172 |||||||||||||| !!:!!||| !:!!! !!.!|||||||||:!!||| !:!!! snGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLy 457233 : ACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAA : 457289 173 : rTyrPheTyrAlaIleLeuIleHisIleAlaThrAlaIleTyrAlaGlySerValThr : 191 !|||.!.:!! !|||:!! |||||| !|||..!:!! !!.!:!!..!||| sTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThr 457290 : GTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACG : 457346 192 : LeuAlaAlaCysAlaThrMetProIleSerTyrIleLeuHisValCysAlaMetPheL : 211 |||.!!||| !! !:!!:!:! !|||!!! !!:!!||||||||||||!.!:!!|||| LeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheL 457347 : TTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCA : 457406 212 : ysIle : 212 ||:!! ysLeu 457407 : AGCTT : 457411 vulgar: CbirOr304CTE 133 212 . KQ414815.1 457174 457411 + 179 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457175 457411 179 + . gene_id 1 ; sequence CbirOr304CTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457175 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457175 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457175 457411 179 + . alignment_id 1 ; Query CbirOr304CTE ; Align 457175 134 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr304CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 5 -> 213 Target range: 447032 -> 448298 6 : GlnTyrTyrLysLeuAsnArgIleLeuLeuLeuCysLeuGlyLeuTrpProTyrGlnA : 25 :!!||||||!..||||||!:! |||||| !! :!!|||||||||||||||:!!! GluTyrTyrSerLeuAsnGlnGlnLeuLeuThrLeuValGlyLeuTrpProTyrLysA 447033 : GAGTACTATAGCCTCAATCAACAGCTTTTGACGTTGGTCGGACTGTGGCCGTACAAGA : 447090 26 : snSerAlaPheLysLysIleGlnIleIlePheTyrGlnThrLeuPheValSerPheLe : 44 ..! ! !!!.! ! :!! ! ! !! !!:! ! ! !!!!|||:!!!!! !!! rgTyrLysLeuThrPheLeuTyrAsnThrTyrMetLeuPhePhePheIleThrAlaPh 447091 : GGTACAAGTTGACATTCCTTTACAATACCTACATGCTGTTCTTCTTCATCACCGCTTT : 447147 45 : uValCysGlnPheAsnThrPheLeu{Va} >>>> Target Intron 1 >>>> : 53 ! !! !||| ! !..!!!.!!!{||} 420 bp ePheLeuGlnValLeuValLeuPhe{Va}++ +- 447148 : CTTTCTTCAGGTACTTGTTTTATTC{GT}gt.........................ac : 447594 54 : {l}LysLysCysAsnThrAspValLeuLeuLysIlePheThrTyrIleValPheAspC : 72 {|}! !:!!! :!!..!|||..!:!!|||!.. ! !.!!! !|||:!!.!. {l}ThrGluLeuAspValAspThrIleLeuSerAspGlyAlaCysIleIleMetLeuL 447595 : {c}ACAGAATTAGACGTTGATACGATTTTAAGTGATGGTGCCTGTATAATCATGTTGC : 447651 73 : ysIleTyrIleValLysTyrSerAlaTrpLeuLeuLeuSerAsnAsnIleLysTyrIl : 91 !||||||||||||||||||!!!.!!!::! ! !! !:!!!!.|||:!:!..! !:! euIleTyrIleValLysTyrCysThrPheCysLysGlnAlaLysAsnValSerCysVa 447652 : TCATCTACATAGTGAAATACTGCACGTTCTGCAAGCAGGCCAAAAACGTGAGTTGTGT : 447708 92 : ePheAspArgMetArgHisAspTrpAsnIleLeuLysAspGlnThrGluCysGluIle : 110 : !!!:! ! !.!:!! !! ||| ! ! |||:!! !... ! ||| lAsnGluIleAlaHisTyrTrp***Asn***GlyTyrAspGluLeuSerValIleIle 447709 : GAACGAAATTGCACATTATTGGTGAAATTAGGGATACGATGAATTAAGCGTTATCATT : 447765 111 : LeuArgGluTyrAla{As} >>>> Target Intron 2 >>>> {p}AsnAlaA : 119 |||!:!.!. !:!!{..} 219 bp {!}||| LeuLysHisSerSer{Se}-+ +-{r}AsnPheI 447766 : TTAAAGCACAGCTCA{AG}at.........................aa{c}aatttta : 448011 120 : rgLeuHisThrIlePhePheLeu<->LeuLeuAlaThrLeuCysPheLeuGlyLeuLe : 137 ::: |||||| ::: ::!:!! !.!!|||! !!!.:!!.!!!!! leIlePheLeuIlePheThrIleSerValValPheAlaLeuSerLeuIleSerPheTh 448012 : ttatctttctcattttcacaatttcagtGGTGTTTGCCTTGTCTTTAATTAGCTTTAC : 448068 138 : uThrLeuGlyCysValProArgIleLeuAspIleIleMetProLeuAsnGluSerArg : 156 ! !:!!! !! !||| !......|||||||||:::||||||:!!|||! !|||! ! rLeuValGluPheValValHisPheLeuAspIleLeuMetProMetAsnValSerThr 448069 : CTTGGTTGAGTTCGTGGTAcattttctcgatattttaATGCCAATGAACGTATCTACA : 448125 157 : ProArgGlnLeuProIleIleValGluTyrPheIleAspGluGluThrTyrPheTyrA : 176 ! !!.!:!!||||||.!!:!!:!!:!!! !||| !|||:!!!!:! !!:!|||:!! ArgHisGluLeuProPheLeuIleGlnCysPheCysAspGlnAspLysPhePheHisT 448126 : CGGCACGAGCTACCCTTCCTAATTCAATGTTTCTGTGATCAAGATAAATTCTTCCACT : 448185 177 : laIleLeuIleHisIleAlaThrAlaIleTyrAlaGlySerValThrLeuAlaAlaCy : 195 !||||||:!! !:!: !..! !! ! ! !|||.!! !..!:!! !||| yrIleLeuValPheLeuIleValLeuThrIleLeuGlyGlySerValValLeuAlaTh 448186 : ATATATTAGTTTTCTTGATCGTTCTCACTATTTTGGGTGGAAGTGTGGTATTAGCCAC : 448242 196 : sAlaThrMetProIleSerTyrIleLeuHisValCysAlaMetPheLysIleAla : 213 !.!!|||! !:!:! !!:!! !! !||| !|||!.!:!!|||||||||||| rThrThrThrTyrLeuIlePheSerGlnHisCysCysGlyLeuPheLysIleAla 448243 : TACAACGACTTACTTGATATTCAGTCAACATTGTTGTGGATTGTTCAAAATTGCA : 448298 vulgar: CbirOr304CTE 5 213 . KQ414815.1 447032 448298 + 160 M 47 141 S 0 2 5 0 2 I 0 416 3 0 2 S 1 1 M 62 186 S 0 2 5 0 2 I 0 215 3 0 2 S 1 1 M 10 30 G 0 3 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 447033 448298 160 + . gene_id 2 ; sequence CbirOr304CTE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 447033 447175 . + . KQ414815.1 exonerate:protein2genome:local exon 447033 447175 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 447176 447177 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 447176 447595 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 447594 447595 . + . intron_id 0 ; splice_site "ac" KQ414815.1 exonerate:protein2genome:local cds 447596 447784 . + . KQ414815.1 exonerate:protein2genome:local exon 447596 447784 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 447785 447786 . + . intron_id 2 ; splice_site "AT" KQ414815.1 exonerate:protein2genome:local intron 447785 448003 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 448002 448003 . + . intron_id 1 ; splice_site "aa" KQ414815.1 exonerate:protein2genome:local cds 448004 448298 . + . KQ414815.1 exonerate:protein2genome:local exon 448004 448298 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 447033 448298 160 + . alignment_id 2 ; Query CbirOr304CTE ; Align 447033 6 141 ; Align 447597 54 186 ; Align 448005 117 30 ; Align 448038 127 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr304CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 124 -> 212 Target range: 460976 -> 461240 125 : PheLeuLeuLeuAlaThrLeuCysPheLeuGlyLeuLeuThrLeuGlyCysValProA : 144 |||||| !:!!!.! !||||||.!.:!! !:!! ! !:!! !! !:!!|||| PheLeuAlaIleValPheLeuCysLeuIleMetIleAlaLeuIleProTyrLeuProA 460977 : tttttaGCAATTGTATTCTTATGCCTAATAATGATCGCGTTAATTCCGTATTTGCCGC : 461034 145 : rgIleLeuAspIleIleMetProLeuAsnGluSerArgProArgGlnLeuProIleIl : 163 |||||!!!! |||:!:! !! !! !|||..!!!!|||||| !:!!:!!|||||||| rgIlePheAlaIleValThrHisGlnAsnArgThrArgProLeuLysIleProIleIl 461035 : GGATCTTCGCGATTGTGACGCATCAGAACAGAACTCGTCCGTTGAAAATACCGATCAT : 461091 164 : eValGluTyrPheIleAspGluGluThrTyrPheTyrAlaIleLeuIleHisIleAla : 182 |||||||||| !:!:|||.!..!. !|||||| !! !|||:!!:!!|||||| ! eValGluTyrHisValAspHisAsnGluTyrPheAspLeuIleIleLeuHisIleAsn 461092 : CGTGGAGTATCACGTGGATCATAACGAGTACTTCGATCTGATCATATTACACATTAAC : 461148 183 : ThrAlaIleTyrAlaGlySerValThrLeuAlaAlaCysAlaThrMetProIleSerT : 202 !..! !!:! !|||! ! !..!:!! !:!!..!! !..!! !:!: ! PheCysHisPheIleGlyPheCysValValIleSerAlaGluValThrAsnLeuValL 461149 : TTCTGCCACTTTATCGGCTTCTGCGTTGTTATATCTGCTGAAGTGACAAATTTGGTAC : 461208 203 : yrIleLeuHisValCysAlaMetPheLysIle : 212 ! !|||:!!|||:!!:!!||| ! :!! euAlaLysHisIleCysSerLeuPheAspLeu 461209 : TTGCGAAACACATTTGCTCGTTGTTCGATCTT : 461240 vulgar: CbirOr304CTE 124 212 . KQ414815.1 460976 461240 + 144 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 460977 461240 144 + . gene_id 3 ; sequence CbirOr304CTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 460977 461240 . + . KQ414815.1 exonerate:protein2genome:local exon 460977 461240 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 460977 461240 144 + . alignment_id 3 ; Query CbirOr304CTE ; Align 460977 125 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr304CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 86 -> 212 Target range: 481775 -> 482235 87 : AsnIleLysTyrIlePheAspArgMetArgHisAspTrpAsnIleLeuLysAspGlnT : 106 .!.:!!||| ! ! !.!.!!:!:!:!!!:!:!!!!:|||.!.! ! !::!|||:!! GlnValLysGluAsnMetGluGlnValLysTyrGluTrpGlnLysAsnArgAspGluC 481776 : CAGGTTAAGGAGAATATGGAGCAAGTGAAATACGAGTGGCAGAAAAATCGGGACGAGT : 481833 107 : hrGluCysGluIleLeuArgGluTyrAlaAspAsnAlaArgLeuHisThrIlePhePh : 125 ! ! ||||||||||||:!!||||||..!!.!!.!!:!! !:::::: ...|| ys---LeuGluIleLeuArgLysTyrAlaSerThrGlyLysTyrTyrSerAsnIlePh 481834 : GT---TTAGAGATCCTGAGAAAGTATGCTAGTACTGGGAAATATtactcgaatatatt : 481887 126 : eLeu{L} >>>> Target Intron 1 >>>> {eu}LeuAlaThrLeuCysPhe : 133 | !{!} 85 bp { !}||| ! !! !! ! eAla{S}++ ++{er}LeuIleTyrProSerVal 481888 : cgcG{T}gt.........................ag{cG}TTAATTTATCCATCGGTG : 481996 134 : LeuGlyLeuLeuThrLeuGlyCysValProArgIleLeuAspIleIleMetProLeuA : 153 ||| !|||:!! !! ! ! ! ! !:!!||||||:!!|||:!:||||||| LeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValProLeuA 481997 : TTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTCCTCTAA : 482056 154 : snGluSerArgProArgGlnLeuProIleIleValGluTyrPheIleAspGluGluTh : 172 |||||!!!||| !!!.!|||!!!|||:!! !:!!|||||||||||||||:!!:!!! snGluThrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGlnGlnLy 482057 : ACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCAGCAGAA : 482113 173 : rTyrPheTyrAlaIleLeuIleHisIleAlaThrAlaIleTyrAlaGlySerValThr : 191 !|||! ! !||| !.!!||| ! !:!!.!! !!.!! !:!!..!! ! sTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAlaThrIle 482114 : ATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCAACGATC : 482170 192 : LeuAlaAlaCysAlaThrMetProIleSerTyrIleLeuHisValCysAlaMetPheL : 211 :!!!.!!.! ! !|||:!! !:!!! !!:::!! !|||!.!...::!:!!|||! IleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerLeuPheT 482171 : ATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCTTGTTCA : 482230 212 : ysIle : 212 :!! hrLeu 482231 : CCCTT : 482235 vulgar: CbirOr304CTE 86 212 . KQ414815.1 481775 482235 + 127 M 20 60 G 1 0 M 19 57 S 0 1 5 0 2 I 0 81 3 0 2 S 1 2 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481776 482235 127 + . gene_id 4 ; sequence CbirOr304CTE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 481776 481893 . + . KQ414815.1 exonerate:protein2genome:local exon 481776 481893 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local splice5 481894 481895 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 481894 481978 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 481977 481978 . + . intron_id 0 ; splice_site "ag" KQ414815.1 exonerate:protein2genome:local cds 481979 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481979 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481776 482235 127 + . alignment_id 4 ; Query CbirOr304CTE ; Align 481776 87 60 ; Align 481836 108 57 ; Align 481981 128 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr304CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 143 -> 212 Target range: 475563 -> 475770 144 : ArgIleLeuAspIleIleMetProLeuAsnGluSerArgProArgGlnLeuProIleI : 163 !:!||||||||| !:!::!:|||||||||||||||||||||!!! !! !! !||| LysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleA 475564 : AAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtac : 475621 164 : leValGluTyrPheIleAspGluGluThrTyrPheTyrAlaIleLeuIleHisIleAl : 182 :::||||||||||||:::|||:!!! !||||||||| !! !:!!|||:!! .! rgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnTh 475622 : gaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGAC : 475678 183 : aThrAlaIleTyrAlaGlySerValThrLeuAlaAlaCysAlaThrMetProIleSer : 201 !..!.!!||| ! ! !.!!..!|||! !!.!||| !! !.!!!!: !! !! ! rValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMet 475679 : TGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATG : 475735 202 : TyrIleLeuHisValCysAlaMetPheLysIle : 212 !:::!:! !||| ! ::::::|||:::||| TrpLeuGlnHisCysIleSerLeuPheGluIle 475736 : TGGTTGCAACATTGCATaagtttatttgaaatt : 475770 vulgar: CbirOr304CTE 143 212 . KQ414815.1 475563 475770 + 124 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475564 475770 124 + . gene_id 5 ; sequence CbirOr304CTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475564 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475564 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475564 475770 124 + . alignment_id 5 ; Query CbirOr304CTE ; Align 475564 144 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr304CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 132 -> 212 Target range: 464597 -> 464840 133 : PheLeuGlyLeuLeuThrLeuGlyCysValProArgIleLeuAspIleIleMetProL : 152 .!.||| !:!!! ! !|||! ! :!!||| !|||||||||:!::!! !|||| IleLeuPheIleCysLeuLeuGluValLeuProAspIleLeuAspValValAlaProL 464598 : ATACTGTTCATCTGTTTACTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCC : 464655 153 : euAsnGluSerArgProArgGlnLeuProIleIleValGluTyrPheIleAspGluGl : 171 |||||||||||||| !!!.!|||! ! !|||! !!.!|||!:!|||||| !!!:.. euAsnGluSerArgSerHisGlnTyrLeuIleThrAlaGluPhePheIleThrAspSe 464656 : TCAATGAATCTCGTTCTCATCAATACTTAATTACCGCGGAATTTTTCATCACTGATAG : 464712 172 : uThrTyrPheTyrAlaIle<->LeuIleHisIleAlaThrAlaIleTyrAlaGlySer : 189 .:!! !||| !:!! ! !:!! !! ! !! !.!!:!! ! !||| ! rSerProAsnTyrIleValThrCysValGlyThrAspIleThrLeuIleMetGlyVal 464713 : TTCGCCGAATTATATCGTAACTTGTGTTGGTACGGATATTACTCTTATCATGGGAGTC : 464769 190 : ValThrLeuAlaAlaCysAlaThrMetProIleSerTyrIleLeuHisValCysAlaM : 209 ..!|||:!! !|||! !! !|||.!. !!.!!! !! :!:! !|||:!!||||||| ThrThrIleIleAlaSerGluThrPheThrPheLeuLeuLeuGlnHisIleCysAlaM 464770 : ACGACAATAATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAA : 464829 210 : etPheLysIle : 212 ||||||||||| etPheLysIle 464830 : TGTTCAAAATC : 464840 vulgar: CbirOr304CTE 132 212 . KQ414815.1 464597 464840 + 119 M 45 135 G 0 3 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464598 464840 119 + . gene_id 6 ; sequence CbirOr304CTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464598 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464598 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464598 464840 119 + . alignment_id 6 ; Query CbirOr304CTE ; Align 464598 133 135 ; Align 464736 178 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr304CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 136 -> 219 Target range: 471582 -> 471831 137 : LeuThrLeuGlyCysValProArgIleLeuAspIleIleMetProLeuAsnGluSerA : 156 :!!! !|||..! !|||! !|||||||||||||||!!:||||||||| !|||| ValIleLeuSerMetSerProLeuIleLeuAspIleIleIleProLeuAsnThrSerA 471583 : GTAATACTGTCCATGTCGCCTCTTATTCTCGATATTATAATACCTCTGAACACGTCAC : 471640 157 : rgProArgGlnLeuProIleIleValGluTyrPheIleAspGluGluThrTyrPheTy : 175 |||||||| ! !!!|||.!!! !!!!:!:!.!! !:!!:!!||| !||||||!! rgProArgTyrPheProPheThrPheAspPheIleProAsnGlnGluGluTyrPhe** 471641 : GTCCACGTTACTTTCCATTTACGTTCGATTTCATTCCCAATCAAGAGGAATACTTCTA : 471697 176 : rAlaIleLeuIleHisIleAlaThrAlaIleTyrAlaGlySerValThrLeuAlaAla : 194 !!||| !||| ! !!.!! ! ! ! !..!|||! !!.!.!!:!! !::! *ProIleThrIlePheSerGlyIleLeuCysIleCysGlyLeuAlaAlaMetIleSer 471698 : ACCGATTACTATCTTTTCTGGCATATTGTGCATTTGTGGATTAGCAGCAATGATAAGT : 471754 195 : CysAlaThrMetProIleSerTyrIleLeuHisValCysAlaMetPheLysIleAlaS : 214 !!! ! !:!!! !!!:! ! !!:!!||||||||| !!!.!:!!!:!!!.||||||! SerGluGlyLeuLeuMetMetAsnValLeuHisValArgGlyLeuTyrAsnIleAlaT 471755 : AGCGAGGGTCTGCTTATGATGAATGTTTTACACGTACGTGGATTGTATAACATCGCTA : 471814 215 : erTyrArgIleLysHis : 219 !!! !:!! !||| hr***ValLeuLeuHis 471815 : CGTGAGTACTATTACAT : 471831 vulgar: CbirOr304CTE 136 219 . KQ414815.1 471582 471831 + 117 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471583 471831 117 + . gene_id 7 ; sequence CbirOr304CTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471583 471831 . + . KQ414815.1 exonerate:protein2genome:local exon 471583 471831 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471583 471831 117 + . alignment_id 7 ; Query CbirOr304CTE ; Align 471583 137 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr299PN(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 185 Query range: 75 -> 202 Target range: 457144 -> 457822 76 : PheIleThrValGlyMetPheIleThrLeuAlaValPheGlyPheTyrGlnPheLeuP : 95 .!.|||||||||..!! !:! ! ! ! !|||.!! ! ! |||.!!!!!| MetIleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheP 457145 : ATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTC : 457202 96 : roAspLeuLeuAspMetIleAlaProLeuAsnAspSerArgLysHisPheLeuThrPh : 114 || |||||||||!!::!:!.!|||||||||!!:|||||| ! ||| !.! roIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrLe 457203 : CGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCT : 457259 115 : eAspAlaGluTyrPheValAspGlnLysGluTyrPheTyrProIleValThrHisGly : 133 ! ||||||||||||||||||..!|||:!!|||.!.:!! !|||:!!.!!||| ! uThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIle 457260 : TACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATT : 457316 134 : LeuThrAlaValTyrIleGlyGlyThrValGlyIleValAlaThrGlyGlyMetLeuM : 153 :!!|||..!:!! |||!.!!.!|||..! :!!..!|||!.!! !..!:!:|||! IleThrCysLeuLeuIleAlaAlaThrThr---LeuThrAlaAsnGluSerLeuLeuI 457317 : ATCACGTGCCTACTGATCGCGGCTACCACG---TTAACAGCTAACGAATCCTTACTTA : 457373 154 : etGlyTyrIleLeuHisIleCysAlaMetLeuLysIleAla{Se} >>>> Target : 167 !: ! !!:!!||||||:!!|||!.!:!!!!!|||:!!.!!{||} 3 leThrAsnValLeuHisValCysGlyLeuPheLysLeuThr{Se}++ 457374 : TAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTTACT{AG}gt........... : 457419 168 : Intron 1 >>>> {r}TyrArgLeuGluHisIleThrAspAspValProLeuVal : 180 03 bp {|}||||||||||||||| ! !||| !!||| ! ! ++{r}TyrArgLeuGluHisSerLeuAspHisVal---ThrSer 457420 : ..............ag{C}TATAGATTAGAACACTCTTTGGACCACGTT---ACCTCA : 457754 181 : SerSerValGluLysAspHisIleIleArgGluArgIleIleSerAlaValAspIleH : 200 ..!!.!:!!! !!.. ! ! ! !! !! !|||:!:|||..!||||||:!!|||| GlnLysLeuGlySerThrLysArgThrTyrValArgLeuIleGluAlaValAsnIleH 457755 : CAAAAATTGGGAAGTACCAAGAGAACGTACGTGAGGCTGATTGAAGCTGTTAACATAC : 457814 201 : isArgArg : 202 |||||!:! isArgLys 457815 : ACAGAAAA : 457822 vulgar: CbirOr299PN(F) 75 202 . KQ414815.1 457144 457822 + 185 M 68 204 G 1 0 M 22 66 S 0 2 5 0 2 I 0 299 3 0 2 S 1 1 M 10 30 G 1 0 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457145 457822 185 + . gene_id 1 ; sequence CbirOr299PN(F) ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 457145 457416 . + . KQ414815.1 exonerate:protein2genome:local exon 457145 457416 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local splice5 457417 457418 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 457417 457719 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457718 457719 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457720 457822 . + . KQ414815.1 exonerate:protein2genome:local exon 457720 457822 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457145 457822 185 + . alignment_id 1 ; Query CbirOr299PN(F) ; Align 457145 76 204 ; Align 457349 145 66 ; Align 457721 168 30 ; Align 457751 179 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr299PN(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 91 -> 165 Target range: 464618 -> 464840 92 : GlnPheLeuProAspLeuLeuAspMetIleAlaProLeuAsnAspSerArgLysHisP : 111 :!! ! |||||||||:!!||||||:!!:!!||||||||||||!!:||||||...||| GluValLeuProAspIleLeuAspValValAlaProLeuAsnGluSerArgSerHisG 464619 : GAAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATGAATCTCGTTCTCATC : 464676 112 : heLeuThrPheAspAlaGluTyrPheValAspGlnLysGluTyrPheTyrProIleVa : 130 ! ! !.!! !||||||!:!|||:!! !.!.!....! !||| !:!!.. lnTyrLeuIleThrAlaGluPhePheIleThrAspSerSerProAsnTyrIleValTh 464677 : AATACTTAATTACCGCGGAATTTTTCATCACTGATAGTTCGCCGAATTATATCGTAAC : 464733 131 : lThrHisGlyLeuThrAlaValTyrIleGlyGlyThrValGlyIleValAlaThrGly : 149 ! ! !||| ! ! !..! !||| !|||..!..! !|||:!!|||:!!! ! rCysValGlyThrAspIleThrLeuIleMetGlyValThrThrIleIleAlaSerGlu 464734 : TTGTGTTGGTACGGATATTACTCTTATCATGGGAGTCACGACAATAATTGCCTCCGAA : 464790 150 : GlyMetLeuMetGlyTyrIleLeuHisIleCysAlaMetLeuLysIle : 165 !.!. !.!. !! :!:! !|||||||||||||||!!!|||||| ThrPheThrPheLeuLeuLeuGlnHisIleCysAlaMetPheLysIle 464791 : ACGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAATGTTCAAAATC : 464840 vulgar: CbirOr299PN(F) 91 165 . KQ414815.1 464618 464840 + 133 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464619 464840 133 + . gene_id 2 ; sequence CbirOr299PN(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464619 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464619 464840 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464619 464840 133 + . alignment_id 2 ; Query CbirOr299PN(F) ; Align 464619 92 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr299PN(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 285 -> 344 Target range: 441705 -> 441955 286 : TyrThrThrArgTrpTyrThrValSerAlaGlnLeuGlnLysLeuLeuLeuPheIleM : 305 |||!.!:!!! !|||||| !||| !! !... !|||||||||||||||||||||| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 306 : etGlnLysThrThrLysAsnTyrTyrPheIleValGlyGlyIlePheAlaAlaSerLe : 324 ||..!|||!:!|||! ! ! ! .!.! !:!!..!|||||||||||| !!!!!! etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 325 : uGluGlyPheAlaThr >>>> Target Intron 1 >>>> MetMetSerThrS : 334 !:!!||||||:!!:!! 73 bp |||!!:||||||| rLysGlyPheSerSer++ ++MetIleSerThrS 441821 : CAAAGGTTTTTCCTCGgt.........................agATGATAAGCACTT : 441923 335 : erIleSerTyrPheMetValIleTyrSerThr : 344 ||.!!|||||| !! !.!|||||||||||| erPheSerTyrValAlaAlaIleTyrSerThr 441924 : CCTTCTCGTATGTCGCAGCGATATATTCGACT : 441955 vulgar: CbirOr299PN(F) 285 344 . KQ414815.1 441705 441955 + 132 M 44 132 5 0 2 I 0 69 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441955 132 + . gene_id 3 ; sequence CbirOr299PN(F) ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 441706 441837 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441837 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 441838 441839 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 441838 441910 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 441909 441910 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 441911 441955 . + . KQ414815.1 exonerate:protein2genome:local exon 441911 441955 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441955 132 + . alignment_id 3 ; Query CbirOr299PN(F) ; Align 441706 286 132 ; Align 441911 330 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr299PN(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 285 -> 344 Target range: 445817 -> 446067 286 : TyrThrThrArgTrpTyrThrValSerAlaGlnLeuGlnLysLeuLeuLeuPheIleM : 305 |||!.!:!!! !|||||| !||| !! !... !|||||||||||||||||||||| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 306 : etGlnLysThrThrLysAsnTyrTyrPheIleValGlyGlyIlePheAlaAlaSerLe : 324 ||..!|||!:!|||! ! ! ! .!!! !:!!..!|||||||||||| !!!!!! etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 325 : uGluGlyPheAlaThr >>>> Target Intron 1 >>>> MetMetSerThrS : 334 !:!!||||||:!!:!! 73 bp |||!!:||||||| rLysGlyPheSerSer++ ++MetIleSerThrS 445933 : CAAAGGTTTTTCCTCGgt.........................agATGATAAGCACTT : 446035 335 : erIleSerTyrPheMetValIleTyrSerThr : 344 ||.!!|||||| !!! !.!|||||||||||| erPheSerTyrValThrAlaIleTyrSerThr 446036 : CTTTCTCGTATGTCACAGCGATATATTCGACT : 446067 vulgar: CbirOr299PN(F) 285 344 . KQ414815.1 445817 446067 + 132 M 44 132 5 0 2 I 0 69 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 446067 132 + . gene_id 4 ; sequence CbirOr299PN(F) ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 445818 445949 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445949 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445950 445951 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445950 446022 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 446021 446022 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 446023 446067 . + . KQ414815.1 exonerate:protein2genome:local exon 446023 446067 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 446067 132 + . alignment_id 4 ; Query CbirOr299PN(F) ; Align 445818 286 132 ; Align 446023 330 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr299PN(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 92 -> 165 Target range: 485710 -> 485926 93 : PheLeuProAspLeuLeuAspMetIleAlaProLeuAsnAspSerArgLysHisPheL : 112 ||| ! !..!:!!||||||!!::!: !||||||||| !!!!!||| !!.. : PheAsnAsnSerIleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrI 485711 : TTTAACAACAGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGA : 485768 113 : euThrPheAspAlaGluTyrPheValAspGlnLysGluTyrPheTyrProIleValTh : 131 !! !!.!.:!!:!!|||:!!||||||||||||:!!:!!|||||||||||||||!.!.! leProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAl 485769 : TTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGC : 485825 132 : rHisGlyLeuThrAlaValTyrIleGlyGlyThrValGlyIleValAlaThrGlyGly : 150 !|||! !:!! ! !||| !||||||!.!! !||| :!!:!!::!||| aHisValValLeuPheValIleIleGlyAlaIleVal---LeuLeuSerThrGluIle 485826 : ACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTA---TTACTCAGCaccgaaata : 485879 151 : MetLeuMetGlyTyrIleLeuHisIleCysAlaMetLeuLysIle : 165 ::::::|||..! |||! !|||! !|||!.!:!!! !! !||| LeuIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIle 485880 : ttaattatggCGATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr299PN(F) 92 165 . KQ414815.1 485710 485926 + 130 M 51 153 G 1 0 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485711 485926 130 + . gene_id 5 ; sequence CbirOr299PN(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485711 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485711 485926 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 485711 485926 130 + . alignment_id 5 ; Query CbirOr299PN(F) ; Align 485711 93 153 ; Align 485864 145 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr299PN(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 205 -> 335 Target range: 489507 -> 490350 206 : GluPheAlaGluPheValValSerSerPheMetIlePheTyrPheIleLeuIleGlyI : 225 ..!!:! !!!:.!...!||||||! !||| !||||||:!!|||||||||: ArgTyrIleAspIleThrValSerIlePheSerAlaThrTyrPheValLeuIleGlyL 489508 : CGGTACATTGACATAACAGTGTCCATTTTCTCTGCGACTTATTTTGTTTTGATAGGGT : 489565 226 : leGlyIleLeuSerLeuThrLeuAsnMetPheGln >>>> Target Intron 1 : 237 !!|||:!::!!! !:!!||| !!.!:!:|||!:: 450 bp euGlyValValIleValThrAlaThrLeuPheArg++ 489566 : TAGGAGTGGTTATTGTAACTGCTACTCTATTTCGTgt..................... : 489603 238 : >>>> ArgLeuGlnPheMetLeuLeuThrAspAspValAsnGlyMetLeuAlaCysV : 254 !! ! ! ||| |||... ! !:!!!!!|||! !: -+AlaTyrTyrPhe***Pro***LysIleAspThrLeuLeuLeuPheAlaPheI 489604 : ....tgGCTTATTATTTCTAgccataaaaaattgatactcTTCTTCTGTTTGCTTTTA : 490102 255 : alLeuLeuIleIleGlyHisLeuAsnTyrLeuPheIleAlaAsnMetAlaGlyGlnIl : 273 !!! !!!! ! ! !||||||||| :::|||::: ! !!...|| leArgPhe***SerLeuHisLeuAsn***IlePheLeuLeuLeuThrLys***SerIl 490103 : TACGATTTTAATCTTTGCAccttaattgaatttttttactattgaCAAAGTGAAGTAT : 490159 274 : eValThrAsp<->HisAsnIleAspIlePheTyrThrThrTyrThrThrArgTrpTyr : 291 |:!!! !||| ! ! :!!:!!|||.!! !!! ! ! !!!:!..!!.!|||||| eIleLysAsp***Val***LeuAsnIleLeuAsnArgCysAsnSerValAsnTrpTyr 490160 : AATAAAAGACTAAGTCTAACTTAACATACTTAATAGATGCAACAGCGTGAATTGGTAC : 490216 292 : ThrValSerAlaGlnLeuGlnLysLeuLeuLeuPheIleMetGlnLysThrThrLysA : 311 |||!.! !! ! :!!|||||||||||||||.!!|||||||||!!.|||! !::!| ThrAlaProIleAlaIleGlnLysLeuLeuLeuIleIleMetGlnAsnThrIleArgA 490217 : ACGGCTCCAATTGCCATACAAAAATTGCTGTTGATCATTATGCAAAATACTATACGAA : 490276 312 : snTyrTyrPheIleValGlyGlyIlePheAlaAlaSerLeuGluGlyPheAlaThrMe : 330 ||! !! .!.! !:!! !|||!!:!:! !:!!|||!!!!!:|||||| !! !:! snSerSerIleThrLeuPheGlyMetTyrIleSerSerPheAspGlyPhePheMetVa 490277 : ATTCTTCAATAACACTCTTCGGAATGTATATATCGTCTTTCGATGGTTTCTTCATGGT : 490333 331 : tMetSerThrSerIle : 335 :! !:!||| ||| lAsnAsnThrIleIle 490334 : AAATAACAcgattatt : 490350 vulgar: CbirOr299PN(F) 205 335 . KQ414815.1 489507 490350 + 120 M 31 93 5 0 2 I 0 446 3 0 2 M 40 120 G 0 3 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 489508 490350 120 + . gene_id 6 ; sequence CbirOr299PN(F) ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 489508 489600 . + . KQ414815.1 exonerate:protein2genome:local exon 489508 489600 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 489601 489602 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 489601 490050 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 490049 490050 . + . intron_id 0 ; splice_site "TG" KQ414815.1 exonerate:protein2genome:local cds 490051 490350 . + . KQ414815.1 exonerate:protein2genome:local exon 490051 490350 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 489508 490350 120 + . alignment_id 6 ; Query CbirOr299PN(F) ; Align 489508 206 93 ; Align 490051 237 120 ; Align 490174 277 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr299PN(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 205 -> 285 Target range: 465107 -> 465528 206 : GluPheAlaGluPheValValSerSerPheMetIlePheTyrPheIleLeuIleGlyI : 225 ..!|||||||||.!!..!! !!.!!!!.!! ! !!:! ! !|||:!!! ! ArgPheAlaGluIleThrGluLysThrIleAlaThrHisPheAlaTyrLeuLeuValA 465108 : AGGTTTGCTGAAATCACAGAGAAAACTATTGCCACGCATTTTGCTTATCTACTCGTAG : 465165 226 : leGlyIleLeuSerLeuThrLeuAsnMetPheGln >>>> Target Intron 1 : 237 !|||:!:||||||:!!|||:!!||||||!:!.!. 181 bp laGlyLeuLeuSerIleThrMetAsnMetTyrAsn++ 465166 : CTGGTTTGCTTTCGATTACCATGAATATGTATAATgt..................... : 465203 238 : >>>> ArgLeuGlnPheMetLeuLeuThrAspAspValAsnGlyMetLeuAlaCysV : 254 ! !! !||| !!!!:|||:!!||| ! |||............ !...! ++LeuSerGlnValIleLeuValThrLysAspAlaLysAsnPheSerGluAlaA 465204 : ....agCTTTCTCAAGTCATATTGGTGACAAAAGatgcaaaaaatttctccgaGGCAG : 465433 255 : alLeuLeuIleIleGlyHisLeuAsnTyrLeuPheIleAlaAsnMetAlaGlyGlnIl : 273 .!!!!!!!:!:||| ... |||:!!.!!!!:..!|||! !||||||!! laPhePheValIleTyrGlnTyrPheTyrMetLeuMetCysAsnAsnLeuGlyGlnMe 465434 : CTTTCTTCGTgatttatcaatatttctaCATGCTTATGTGCAACAATTTGGGACAAAT : 465490 274 : eValThrAspHisAsnIleAspIlePheTyrThrThr : 285 ::!!|||||||||!:!.!!|||:!!||| !||| tIleThrAspHisSerPheAspValPheThrGlnThr 465491 : GATAACAGACCACAGTTTCGACGTTTTTACACAAACG : 465528 vulgar: CbirOr299PN(F) 205 285 . KQ414815.1 465107 465528 + 119 M 31 93 5 0 2 I 0 177 3 0 2 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 465108 465528 119 + . gene_id 7 ; sequence CbirOr299PN(F) ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 465108 465200 . + . KQ414815.1 exonerate:protein2genome:local exon 465108 465200 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 465201 465202 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 465201 465381 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 465380 465381 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 465382 465528 . + . KQ414815.1 exonerate:protein2genome:local exon 465382 465528 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 465108 465528 119 + . alignment_id 7 ; Query CbirOr299PN(F) ; Align 465108 206 93 ; Align 465382 237 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr299PN(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 73 -> 165 Target range: 475497 -> 475770 74 : GlyValPheIleThrValGlyMetPheIleThrLeuAlaValPheGlyPheTyrGlnP : 93 ||| ...::!|||||| !:!:!:! !|||:!! !..!.!. !!!. !! | GlyAsnIleValThrValLeuValTyrProThrIlePheThrMetIleLeuLeuLeuP 475498 : gggaatattgtTACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTCTCT : 475555 94 : heLeuProAspLeuLeuAspMetIleAlaProLeuAsnAspSerArgLysHisPheLe : 112 ||! ! !! ! :!!|||||| :!: !|||||||||!!:|||||| !!::! heSerSerLysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSe 475556 : TCTCGTCTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTC : 475612 113 : uThrPheAspAlaGluTyrPheValAspGlnLysGluTyrPheTyrProIleValThr : 131 ! !... |||||||||:::::::!!:!!:!!|||||||||! !! !|||! ! rLeuIleArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIle 475613 : TCTGAtacgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATC : 475669 132 : HisGlyLeuThrAlaValTyrIleGlyGlyThrValGlyIleValAlaThrGlyGlyM : 151 :!! ! !..!.!!:!! !:!: !||||||..! !|||||||||! !!.!! TyrGlnThrValThrIleLeuLeuPheGlyThrThr---TyrValAlaThrGluAlaI 475670 : TATCAGACTGTAACGATCCTTCTGTTTGGTACCACG---TACGTAGCAACTGAAGCAA : 475726 152 : etLeuMetGlyTyrIleLeuHisIleCysAlaMetLeuLysIle : 165 !:!!!! !!:::!:! !||| ! ::::::...:::||| lePheThrMetTrpLeuGlnHisCysIleSerLeuPheGluIle 475727 : TATTTACCATGTGGTTGCAACATTGCATaagtttatttgaaatt : 475770 vulgar: CbirOr299PN(F) 73 165 . KQ414815.1 475497 475770 + 105 M 70 210 G 1 0 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475498 475770 105 + . gene_id 8 ; sequence CbirOr299PN(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475498 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475498 475770 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 475498 475770 105 + . alignment_id 8 ; Query CbirOr299PN(F) ; Align 475498 74 210 ; Align 475708 145 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr302PN Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 169 Query range: 74 -> 165 Target range: 457168 -> 457744 75 : SerCysIleIleTyrGlyIlePheGluAlaMetProValIleLeuAspIleIleLeuP : 94 .!!...:!::!! ! !! !!.:!! !.!.|||:!!:!!|||||||||:!::!!| GlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValP 457169 : GGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCC : 457226 95 : roLeuAsnLysThrArgProArgGluIleHisAlaLeuLeuGluTyrPheIleAspLy : 113 ||||||||:!!:!!|||||| !!|||:!!:!! ! ! !|||||||||:!!|||! roLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMe 457227 : CATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACAT : 457283 114 : sAspAlaTyrPhePheProIleLeuCysHisTrpLeuIleGlyLeuIleIleGlyCys : 132 ! ! !|||.!. ! !|||:!!...||| :!!! !!|||:!:|||!.!..! tLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAla 457284 : GAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCT : 457340 133 : TyrThrIleIleCysValSerThrSerLeuMetIleCysValGlnHisIleSerGlyL : 152 !|||:!!! !..! !..!:!!! !|||!!:! !|||! !|||:!!!!!|||| ThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyL 457341 : ACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGAT : 457400 153 : euPheLysValAla{As} >>>> Target Intron 1 >>>> {n}TyrArgIl : 160 ||||||||:!!.!!{!:} 303 bp {!}||||||:! euPheLysLeuThr{Se}++ ++{r}TyrArgLe 457401 : TGTTCAAGCTTACT{AG}gt.........................ag{C}TATAGATT : 457727 161 : eGluHisSerAlaAsp : 165 !||||||||| !||| uGluHisSerLeuAsp 457728 : AGAACACTCTTTGGAC : 457744 vulgar: CbirOr302PN 74 165 . KQ414815.1 457168 457744 + 169 M 82 246 S 0 2 5 0 2 I 0 299 3 0 2 S 1 1 M 8 24 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457169 457744 169 + . gene_id 1 ; sequence CbirOr302PN ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 457169 457416 . + . KQ414815.1 exonerate:protein2genome:local exon 457169 457416 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 457417 457418 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 457417 457719 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457718 457719 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457720 457744 . + . KQ414815.1 exonerate:protein2genome:local exon 457720 457744 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457169 457744 169 + . alignment_id 1 ; Query CbirOr302PN ; Align 457169 75 246 ; Align 457721 158 24 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr302PN Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 209 -> 312 Target range: 445549 -> 445967 210 : HisPhePhePheIleLeuLeuLysAlaIleIleThrLeu<->AspGluValGluIleV : 228 ||| ! !!! :!!:!!|||||||||:!:|||:!! |||:!!:!!||||||: HisHisValSerGlnIleValLysAlaIleValThrMetAsnAspGlnLeuGluIleL 445550 : catcaTGTTTCACAGATAGTAAAAGCAATAGTGACAATGAATGATCAATTGGAGATAC : 445607 229 : alSerSerIleLeuPheThrSerGlyHisPheValIleMetPheGlyIleAsnTyrTy : 247 !!! !||||||:!!.!!..!|||..!|||.!.|||.!!:!!||| !! !|||||| euLeuSerIleMetIleValSerAsnHisIleValPheLeuPhePheAsnAsnTyrAl 445608 : TGTTAAGTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACAACTACGC : 445664 248 : rGlyGlnGlnIleThrAspTyrHisSerGluIlePheThrAla{Al} >>>> Targ : 262 |||||| !:!:! !:!!:!! !..!|||:!!|||..!! !{:!} aGlyGlnLeuLeuIleAsnHisSerGluGluValPheValGlu{Se}++ 445665 : AGGACAGTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA{TC}gt......... : 445713 263 : et Intron 1 >>>> {a}TyrAsnValArgTrpTyrValThrProValLysIleG : 275 106 bp {!}|||||| !! !|||||| !..!|||:!!!.. | ++{r}TyrAsnSerThrTrpTyrCysValProLeuSerAlaG 445714 : ................ag{A}TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGC : 445854 276 : lnLysLeuLeuLeuPheIleMetGlnSerThrThrLysAlaTyrTyrLeuAsnIleGl : 294 |||||||||||||||||||||||..!!.!!:!|||! !!! ! ! :!!|||:!!.. lnLysLeuLeuLeuPheIleMetMetLysSerThrIleProCysLysIleAsnLeuSe 445855 : AAAAGTTGTTATTGTTCATCATGATGAAAAGTACGATCCCATGTAAGATTAATCTCTC : 445911 295 : yAsnLeuIleValAlaSerIleGluGlyPheSerLysLeuValSerMetAlaIle : 312 !..!:!!.!!!.! !!!!! !:!!|||||||||..!:!!:!!!!!:!: !:!! rGlyIlePheAlaProCysTyrLysGlyPheSerSerValIleCysLeuLeuLeu 445912 : CGGTATATTTGCTCCGTGTTACAAAGGTTTTTCCTCGGTAATTTGTCTTTTGCTA : 445967 vulgar: CbirOr302PN 209 312 . KQ414815.1 445549 445967 + 167 M 13 39 G 0 3 M 39 117 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445550 445967 167 + . gene_id 2 ; sequence CbirOr302PN ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 445550 445710 . + . KQ414815.1 exonerate:protein2genome:local exon 445550 445710 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445711 445712 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445711 445816 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 445815 445816 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 445817 445967 . + . KQ414815.1 exonerate:protein2genome:local exon 445817 445967 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445550 445967 167 + . alignment_id 2 ; Query CbirOr302PN ; Align 445550 210 39 ; Align 445592 223 117 ; Align 445818 263 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr302PN Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 209 -> 312 Target range: 441437 -> 441855 210 : HisPhePhePheIleLeuLeuLysAlaIleIleThrLeu<->AspGluValGluIleV : 228 ||| ! !!! :!!:!!|||||||||:!:|||:!! |||:!!:!!||||||: HisHisValSerGlnIleValLysAlaIleValThrMetAsnAspGlnLeuGluIleL 441438 : catcaTGTTTCACAGATAGTAAAAGCAATAGTGACAATGAATGATCAATTGGAGATAC : 441495 229 : alSerSerIleLeuPheThrSerGlyHisPheValIleMetPheGlyIleAsnTyrTy : 247 !!! !||||||:!!.!!..!|||..!|||.!.|||.!!:!!||| !! !|||||| euLeuSerIleMetIleValSerAsnHisIleValPheLeuPhePheAsnAsnTyrAl 441496 : TGTTAAGTATCATGATCGTCAGTAATCACATAGTGTTCCTGTTCTTTAACAACTACGC : 441552 248 : rGlyGlnGlnIleThrAspTyrHisSerGluIlePheThrAla{Al} >>>> Targ : 262 |||||| !:!:! !:!!:!! !..!|||:!!|||..!! !{:!} aGlyGlnLeuLeuIleAsnHisSerGluGluValPheValGlu{Se}++ 441553 : AGGACAGTTACTGATAAACCATAGCGAAGAAGTCTTCGTTGAA{TC}gt......... : 441601 263 : et Intron 1 >>>> {a}TyrAsnValArgTrpTyrValThrProValLysIleG : 275 106 bp {!}|||||| !! !|||||| !..!|||:!!!.. | ++{r}TyrAsnSerThrTrpTyrCysValProLeuSerAlaG 441602 : ................ag{A}TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGC : 441742 276 : lnLysLeuLeuLeuPheIleMetGlnSerThrThrLysAlaTyrTyrLeuAsnIleGl : 294 |||||||||||||||||||||||..!!.!!:!|||! !!! ! ! :!!|||:!!.. lnLysLeuLeuLeuPheIleMetMetLysSerThrIleProCysLysMetAsnLeuSe 441743 : AGAAGTTGTTATTGTTCATCATGATGAAAAGTACGATCCCATGTAAGATGAATCTCTC : 441799 295 : yAsnLeuIleValAlaSerIleGluGlyPheSerLysLeuValSerMetAlaIle : 312 !..!:!!.!!!.! !!!!! !:!!|||||||||..!:!!:!!!!!:!: !:!! rGlyIlePheAlaProCysTyrLysGlyPheSerSerValIleCysLeuLeuLeu 441800 : CGGTATATTTGCTCCGTGTTACAAAGGTTTTTCCTCGGTAATTTGTCTTTTGCTA : 441855 vulgar: CbirOr302PN 209 312 . KQ414815.1 441437 441855 + 166 M 13 39 G 0 3 M 39 117 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441438 441855 166 + . gene_id 3 ; sequence CbirOr302PN ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 441438 441598 . + . KQ414815.1 exonerate:protein2genome:local exon 441438 441598 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 441599 441600 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 441599 441704 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 441703 441704 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 441705 441855 . + . KQ414815.1 exonerate:protein2genome:local exon 441705 441855 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441438 441855 166 + . alignment_id 3 ; Query CbirOr302PN ; Align 441438 210 39 ; Align 441480 223 117 ; Align 441706 263 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr302PN Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 87 -> 155 Target range: 485722 -> 485926 88 : IleLeuAspIleIleLeuProLeuAsnLysThrArgProArgGluIleHisAlaLeuL : 107 ||||||||||||:!::!!||||||||| ! |||||||||||| !|||! ! ! !! IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 108 : euGluTyrPheIleAspLysAspAlaTyrPhePheProIleLeuCysHisTrpLeuIl : 126 !|||:!!|||:!!|||:!!.!. !||||||!:!|||||| !...||| :!!:! erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 127 : eGlyLeuIleIleGlyCysTyrThrIleIleCysValSerThrSerLeuMetIleCys : 145 ! !:!!|||||||||... ..!:!!:!! !!...... :::||| uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 146 : ValGlnHisIleSerGlyLeuPheLysVal : 155 :!!||||||! !!!!||||||!:!! !:!! IleGlnHisThrCysGlyLeuTyrThrIle 485895 : ATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr302PN 87 155 . KQ414815.1 485722 485926 + 155 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485926 155 + . gene_id 4 ; sequence CbirOr302PN ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485926 155 + . alignment_id 4 ; Query CbirOr302PN ; Align 485723 88 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr302PN Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 37 -> 153 Target range: 481881 -> 482229 38 : IleTyrSerThrTrpAsnLeuMetArgAsnGluThrGluHisLysIleMetArgGlnT : 57 ||||||||| ! !..:!! !!..|||||| !:!! ! ||| |||..!| IleTyrSerArgValArgVal***ValThrGluThrIleTyrAspIleHisArgMetT 481882 : atatattcgcGTGTAAGAGTATAAGTAACGGAAACAATATACGATATACATAGAATGT : 481939 58 : yrLysAlaLysAlaGluTyrHisThrLysLeuPheLeuThrIleIleIleSerSerCy : 76 ||!!. !!..::: ::: ||| ... ..!:!!||| ! !!||| yrAsnIleSerSerIle***Asn***LysAsnIleThrAlaLeuIleTyrProSerVa 481940 : ATAATATAAGcagtatttaaaattagaaaaatattacagcGTTAATTTATCCATCGGT : 481996 77 : sIleIleTyrGlyIlePheGluAlaMetProValIleLeuAspIleIleLeuProLeu : 95 :!:||| !:!:! !.!. ! ! ! !!:!!||||||:!!|||:!!|||||| lLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValProLeu 481997 : GTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTCCTCTA : 482053 96 : AsnLysThrArgProArgGluIleHisAlaLeuLeuGluTyrPheIleAspLysAspA : 115 |||:!!|||||| !!!.!:!!.!!! !.!! !:!!|||||||||||||||:!!.!. AsnGluThrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGlnGlnL 482054 : AACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCAGCAGA : 482113 116 : laTyrPhePheProIleLeuCysHisTrpLeuIleGlyLeuIleIleGlyCysTyrTh : 134 !|||! .!! !||| !! !||| !! !.!!..!!!!:!!:!!! !... ! ysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAlaThrIl 482114 : AATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCAACGAT : 482170 135 : rIleIleCysValSerThrSerLeuMetIleCysValGlnHisIleSerGlyLeuPhe : 153 !|||:!! ! :!!..!|||! !:!!:!:!!:!! :!!:!!||| !:!!.!!|||||| eIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerLeuPhe 482171 : CATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCTTGTTC : 482227 vulgar: CbirOr302PN 37 153 . KQ414815.1 481881 482229 + 136 M 116 348 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481882 482229 136 + . gene_id 5 ; sequence CbirOr302PN ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481882 482229 . + . KQ414815.1 exonerate:protein2genome:local exon 481882 482229 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481882 482229 136 + . alignment_id 5 ; Query CbirOr302PN ; Align 481882 38 348 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr302PN Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 69 -> 156 Target range: 448037 -> 448298 70 : ThrIleIleIleSerSerCysIleIleTyrGlyIlePheGluAlaMetProValIleL : 89 ..!:!:.!! !! !|||! |||! !!:! !:!: !!||| !:!! ! ...| ValValPheAlaLeuSerLeuIleSerPheThrLeuValGluPheValValHisPheL 448038 : gtGGTGTTTGCCTTGTCTTTAATTAGCTTTACCTTGGTTGAGTTCGTGGTAcattttc : 448095 90 : euAspIleIleLeuProLeuAsnLysThrArgProArgGluIleHisAlaLeuLeuGl : 108 ||||||||::::!!|||:!!||| !:!!! !! !!.!|||:!!! ! !|||:!!:! euAspIleLeuMetProMetAsnValSerThrArgHisGluLeuProPheLeuIleGl 448096 : tcgatattttaATGCCAATGAACGTATCTACACGGCACGAGCTACCCTTCCTAATTCA : 448152 109 : uTyrPheIleAspLysAspAlaTyrPhePheProIleLeuCysHisTrpLeuIleGly : 127 !! !||| !|||:!!||| !!:!||| ! !|||||| ! !! !:!!:!! ! nCysPheCysAspGlnAspLysPhePheHisTyrIleLeuValPheLeuIleValLeu 448153 : ATGTTTCTGTGATCAAGATAAATTCTTCCACTATATATTAGTTTTCTTGATCGTTCTC : 448209 128 : LeuIleIleGlyCysTyrThrIleIleCysValSerThrSerLeuMetIleCysValG : 147 !|||:!:||| ! !..!:!!:!!..!..!!!!|||!!!! !:!!|||! ! !| ThrIleLeuGlyGlySerValValLeuAlaThrThrThrThrTyrLeuIlePheSerG 448210 : ACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAACGACTTACTTGATATTCAGTC : 448269 148 : lnHisIleSerGlyLeuPheLysValAla : 156 ||||| !!!!||||||||||||:!!||| lnHisCysCysGlyLeuPheLysIleAla 448270 : AACATTGTTGTGGATTGTTCAAAATTGCA : 448298 vulgar: CbirOr302PN 69 156 . KQ414815.1 448037 448298 + 129 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448038 448298 129 + . gene_id 6 ; sequence CbirOr302PN ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448038 448298 . + . KQ414815.1 exonerate:protein2genome:local exon 448038 448298 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448038 448298 129 + . alignment_id 6 ; Query CbirOr302PN ; Align 448038 70 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr302PN Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 80 -> 156 Target range: 471585 -> 471813 81 : IlePheGluAlaMetProValIleLeuAspIleIleLeuProLeuAsnLysThrArgP : 100 |||.!.... ! !|||:!!|||||||||||||||:!!|||||||||! !:!!|||| IleLeuSerMetSerProLeuIleLeuAspIleIleIleProLeuAsnThrSerArgP 471586 : ATACTGTCCATGTCGCCTCTTATTCTCGATATTATAATACCTCTGAACACGTCACGTC : 471643 101 : roArgGluIleHisAlaLeuLeuGluTyrPheIleAspLysAspAlaTyrPhePhePr : 119 ||||| ! .!!! ! !!!!!!:!:!.!! !:!!:!!!!:! !||||||! || roArgTyrPheProPheThrPheAspPheIleProAsnGlnGluGluTyrPhe***Pr 471644 : CACGTTACTTTCCATTTACGTTCGATTTCATTCCCAATCAAGAGGAATACTTCTAACC : 471700 120 : oIleLeuCysHisTrpLeuIleGlyLeuIleIleGlyCysTyrThrIleIleCysVal : 138 |||| ! ! !! !||| !! !||| !|||! .!!!!:||| !! ! oIleThrIlePheSerGlyIleLeuCysIleCysGlyLeuAlaAlaMetIleSerSer 471701 : GATTACTATCTTTTCTGGCATATTGTGCATTTGTGGATTAGCAGCAATGATAAGTAGC : 471757 139 : SerThrSerLeuMetIleCysValGlnHisIleSerGlyLeuPheLysValAla : 156 ..! ! !||||||!!: !||| !|||:!! !!||||||!:!!!.:!!||| GluGlyLeuLeuMetMetAsnValLeuHisValArgGlyLeuTyrAsnIleAla 471758 : GAGGGTCTGCTTATGATGAATGTTTTACACGTACGTGGATTGTATAACATCGCT : 471813 vulgar: CbirOr302PN 80 156 . KQ414815.1 471585 471813 + 118 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471586 471813 118 + . gene_id 7 ; sequence CbirOr302PN ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471586 471813 . + . KQ414815.1 exonerate:protein2genome:local exon 471586 471813 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471586 471813 118 + . alignment_id 7 ; Query CbirOr302PN ; Align 471586 81 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr291INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 32 -> 115 Target range: 457162 -> 457411 33 : HisPheGlyIleSerCysTyrLeuThrLeuGlnLeuLeuProLeuIleLeuAspValI : 52 :!!! !||| ! ! ! ! !||||||||||||!!!|||:!!:!!||||||:!!: TyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleV 457163 : TATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTG : 457220 53 : leValProLeuAsnAlaThrArgSerLeuLysLeuIleThrIleThrGluTyrPheVa : 71 !:||||||||||||! !:!!||| !!! !:!!||| ! !! !.!!||||||||||| alValProLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheVa 457221 : TGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGT : 457277 72 : lAsnArgGluLysTyrAlaCysAlaIleLeuLeuHisGluMetLeuThrValTyrVal : 90 |:!!! !:!!|||||| ! ! !|||:!! !||| !!: ! !:!! :!! lAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIle 457278 : CGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATC : 457334 91 : GlyAlaIleThrThrCysSerThrGlyLeuIlePheMetAlaTyrIleLeuHisGlyC : 110 !.!|||! !||| ! :!!!.!! !! !:!!.!!!!:.!! !!:!!||||||! !| AlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValC 457335 : GCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTT : 457394 111 : ysAlaLeuLeuLysIle : 115 ||!.!|||!!!|||:!! ysGlyLeuPheLysLeu 457395 : GTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr291INT 32 115 . KQ414815.1 457162 457411 + 148 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457163 457411 148 + . gene_id 1 ; sequence CbirOr291INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457163 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457163 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457163 457411 148 + . alignment_id 1 ; Query CbirOr291INT ; Align 457163 33 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr291INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 235 -> 294 Target range: 445817 -> 446067 236 : TyrAsnGlyLeuTrpTyrAlaAlaProLeuArgThrGlnLysLeuIleLeuPheIleM : 255 ||||||..! !||||||..!!.!||||||!!!.!!|||||||||:!!|||||||||| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 256 : etGlnLysThrThrValLysIleThrLeuValCysGlyGlyIlePheValAlaSerLe : 274 ||..!|||!:!|||:!! ! !! !:!! ! !..!|||||||||!.! !!!!!! etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 275 : uGluGlyPheValThr >>>> Target Intron 1 >>>> LeuValAsnThrA : 284 !:!!|||||| !:!! 73 bp :!!:!!!:!|||: rLysGlyPheSerSer++ ++MetIleSerThrS 445933 : CAAAGGTTTTTCCTCGgt.........................agATGATAAGCACTT : 446035 285 : laValSerTyrPheThrValIleTyrSerThr : 294 !! !!|||||| !!|||!.!|||||||||||| erPheSerTyrValThrAlaIleTyrSerThr 446036 : CTTTCTCGTATGTCACAGCGATATATTCGACT : 446067 vulgar: CbirOr291INT 235 294 . KQ414815.1 445817 446067 + 145 M 44 132 5 0 2 I 0 69 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 446067 145 + . gene_id 2 ; sequence CbirOr291INT ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 445818 445949 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445949 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445950 445951 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445950 446022 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 446021 446022 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 446023 446067 . + . KQ414815.1 exonerate:protein2genome:local exon 446023 446067 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 446067 145 + . alignment_id 2 ; Query CbirOr291INT ; Align 445818 236 132 ; Align 446023 280 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr291INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 47 -> 115 Target range: 485722 -> 485926 48 : IleLeuAspValIleValProLeuAsnAlaThrArgSerLeuLysLeuIleThrIleT : 67 |||||||||:!!:!::!!||||||||| !|||||| !!! !! !:!! !! !! !: IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 68 : hrGluTyrPheValAsnArgGluLysTyrAlaCysAlaIleLeuLeuHisGluMetLe : 86 !!|||:!!||||||:!!!:!:!!|||||| !! ! !!||| ! !|||! :!:|| erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 87 : uThrValTyrValGlyAlaIleThrThrCysSerThrGlyLeuIlePheMetAlaTyr : 105 | !||| !:!!|||||||||..! ! !|||||| ::::::...|||||| uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 106 : IleLeuHisGlyCysAlaLeuLeuLysIle : 115 |||! !||| !|||!.!|||! !! !||| IleGlnHisThrCysGlyLeuTyrThrIle 485895 : ATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr291INT 47 115 . KQ414815.1 485722 485926 + 138 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485926 138 + . gene_id 3 ; sequence CbirOr291INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485926 138 + . alignment_id 3 ; Query CbirOr291INT ; Align 485723 48 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr291INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 235 -> 281 Target range: 441705 -> 441843 236 : TyrAsnGlyLeuTrpTyrAlaAlaProLeuArgThrGlnLysLeuIleLeuPheIleM : 255 ||||||..! !||||||..!!.!||||||!!!.!!|||||||||:!!|||||||||| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 256 : etGlnLysThrThrValLysIleThrLeuValCysGlyGlyIlePheValAlaSerLe : 274 ||..!|||!:!|||:!! ! !! !:!! ! !..!|||||||||!.! !!!!!! etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 275 : uGluGlyPheValThrLeuVal : 281 !:!!|||||| !:!!:!!:!! rLysGlyPheSerSerValIle 441821 : CAAAGGTTTTTCCTCGGTAATT : 441843 vulgar: CbirOr291INT 235 281 . KQ414815.1 441705 441843 + 113 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441843 113 + . gene_id 4 ; sequence CbirOr291INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441706 441843 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441843 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441843 113 + . alignment_id 4 ; Query CbirOr291INT ; Align 441706 236 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr291INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 46 -> 115 Target range: 482028 -> 482235 47 : LeuIleLeuAspValIleValProLeuAsnAlaThrArgSerLeuLysLeuIleThrI : 66 !!!:!!||||||||||||||||||||||||! !||||||!!!! !:!!!!! !..! PheValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValS 482029 : TTCGTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTAT : 482086 67 : leThrGluTyrPheValAsnArgGluLysTyrAlaCysAlaIleLeuLeuHisGluMe : 85 !! !|||||||||:!!:!!!:!:!!||||||:!! ! !||| !!!!|||:!! erMetGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTr 482087 : CAATGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTG : 482143 86 : tLeuThrValTyrValGlyAlaIleThrThrCysSerThrGlyLeuIlePheMetAla : 104 !!!!:!! !! !|||! !|||! ! !! ! !.!!! !! ! !:!:.!!:!: ! pPheSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMet 482144 : GTTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATG : 482200 105 : TyrIleLeuHisGlyCysAlaLeuLeuLysIle : 115 !:::!! !|||!.!...::!|||!!!! :!! TrpLeuGluHisAlaAlaSerLeuPheThrLeu 482201 : TGGCTTGAACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: CbirOr291INT 46 115 . KQ414815.1 482028 482235 + 104 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482029 482235 104 + . gene_id 5 ; sequence CbirOr291INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482029 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 482029 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482029 482235 104 + . alignment_id 5 ; Query CbirOr291INT ; Align 482029 47 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr311PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 191 Query range: 98 -> 217 Target range: 457180 -> 457834 99 : IleIleIleLeuSerSerIleSerPheIleLeuAspAlaIleIleProLeuAsnGluS : 118 |||! !! |||..! !.!! !!.!.:!!|||||| !:!::!!||||||||||||| IleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluS 457181 : ATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAAT : 457238 119 : erArgProLeuTrpLeuProIleIleValGluTyrPheValAspGlnGluArgTyrPh : 137 ||||||||! ! !||| !:!!! !!.!|||||||||||||||..!:!!!:!|||.! erArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMe 457239 : CACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATAT : 457295 138 : ePheAlaIleLeuIleHisThrPheMetPheValTyrValGlyCysIleThrIleAla : 156 . ! !|||:!! |||! !.!!! !! !:!! :!!!.!..!! !|||:!!.!! tHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThr 457296 : GCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACA : 457352 157 : AlaIleAlaThrMetLeuIleAlaTyrValLeuHisAsnCysAlaIlePheGluValA : 176 |||! !! !:!!:!:||||||.!! !!||||||||| !|||!.!:!:|||:!!:!!. AlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeuT 457353 : GCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTTA : 457412 177 : la{Se} >>>> Target Intron 1 >>>> {r}TyrArgIleGluHisIlePh : 184 !!{||} 303 bp {|}||||||:!!|||||| !!! hr{Se}++ ++{r}TyrArgLeuGluHisSerLe 457413 : CT{AG}gt.........................ag{C}TATAGATTAGAACACTCTTT : 457739 185 : eAspLysThrIleLeuGlnMetSerLysAspIleArgGlnHisIleLeuTyrGluArg : 203 .||| ! ..!! !! !|||! ! ! !..!! !!:!::! !|||! !||| uAspHisValThrSerGlnLysLeuGlySerThrLysArg------ThrTyrValArg 457740 : GGACCACGTTACCTCACAAAAATTGGGAAGTACCAAGAGA------ACGTACGTGAGG : 457790 204 : LeuIleHisAlaValTyrLeuHisArgArgAlaValAspLeu : 217 ||||||.!.|||||| !!:!!||||||!:!||| !!!:||| LeuIleGluAlaValAsnIleHisArgLysAlaTyrGluLeu 457791 : CTGATTGAAGCTGTTAACATACACAGAAAAGCTTACGAGTTG : 457834 vulgar: CbirOr311PI 98 217 . KQ414815.1 457180 457834 + 191 M 78 234 S 0 2 5 0 2 I 0 299 3 0 2 S 1 1 M 20 60 G 2 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457181 457834 191 + . gene_id 1 ; sequence CbirOr311PI ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 457181 457416 . + . KQ414815.1 exonerate:protein2genome:local exon 457181 457416 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 457417 457418 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 457417 457719 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457718 457719 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457720 457834 . + . KQ414815.1 exonerate:protein2genome:local exon 457720 457834 . + . insertions 0 ; deletions 2 KQ414815.1 exonerate:protein2genome:local similarity 457181 457834 191 + . alignment_id 1 ; Query CbirOr311PI ; Align 457181 99 234 ; Align 457721 178 60 ; Align 457781 200 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr311PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 98 -> 173 Target range: 482004 -> 482229 99 : IleIleIleLeuSerSerIleSerPheIleLeuAspAlaIleIleProLeuAsnGluS : 118 :!:|||:!:! ! !! ! ||||||:!!||||||!.!|||:!!||||||||||||! LeuIleLeuCysHisMetSerSerPheValLeuAspValIleValProLeuAsnGluT 482005 : CTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTCCTCTAAACGAGA : 482062 119 : erArgProLeuTrpLeuProIleIleValGluTyrPheValAspGlnGluArgTyrPh : 137 !!||| !!! ! !!!|||:!! !:!!|||||||||:!!||||||:!!!:!|||! hrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGlnGlnLysTyrSe 482063 : CTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCAGCAGAAATATTC : 482119 138 : ePheAlaIleLeuIleHisThrPheMetPheValTyrValGlyCysIleThrIleAla : 156 .!! !||| !.!!||| !!::.!.! ! !! !|||! !...! ! !|||!.! rLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAlaThrIleIleVal 482120 : ACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCAACGATCATTGTC : 482176 157 : AlaIleAlaThrMetLeuIleAlaTyrValLeuHisAsnCysAlaIlePhe : 173 !.!|||! !|||:!!:!!:!! !!:::!! !||| !...::!:!:||| GlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerLeuPhe 482177 : GGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCTTGTTC : 482229 vulgar: CbirOr311PI 98 173 . KQ414815.1 482004 482229 + 142 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482005 482229 142 + . gene_id 2 ; sequence CbirOr311PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482005 482229 . + . KQ414815.1 exonerate:protein2genome:local exon 482005 482229 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482005 482229 142 + . alignment_id 2 ; Query CbirOr311PI ; Align 482005 99 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr311PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 98 -> 175 Target range: 475539 -> 475770 99 : IleIleIleLeuSerSerIleSerPheIleLeuAspAlaIleIleProLeuAsnGluS : 118 !!:|||:!:||| !! ! ||| |||||||||:!!:!::!!||||||||||||| MetIleLeuLeuLeuPheSerSerLysIleLeuAspSerLeuLeuProLeuAsnGluS 475540 : ATGATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGT : 475597 119 : erArgProLeuTrpLeuProIleIleValGluTyrPheValAspGlnGluArgTyrPh : 137 |||||||| !|||! !! !||| :::|||||||||:::::::!!:!!!:!||||| erArgProSerTrpSerLeuIleArgIleGluTyrPheIleAsnGluGlnLysTyrPh 475598 : CTCGTCCTAGCTGGTCTCTGAtacgaatagaatatttcataaacGAACAGAAATACTT : 475654 138 : ePheAlaIleLeuIleHisThrPheMetPheValTyrValGlyCysIleThrIleAla : 156 |!:! !! !:!!|||:!! ! !:!: :!! !:!! ! !!! !||| !!.! eTyrLeuSerValIleTyrGlnThrValThrIleLeuLeuPheGlyThrThrTyrVal 475655 : TTATCTGAGCGTGATCTATCAGACTGTAACGATCCTTCTGTTTGGTACCACGTACGTA : 475711 157 : AlaIleAlaThrMetLeuIleAlaTyrValLeuHisAsnCysAlaIlePheGluVal : 175 |||! !! !.!!!!:!!!! ! !!:::!!! !||| ! ::::::||||||::: AlaThrGluAlaIlePheThrMetTrpLeuGlnHisCysIleSerLeuPheGluIle 475712 : GCAACTGAAGCAATATTTACCATGTGGTTGCAACATTGCATaagtttatttgaaatt : 475770 vulgar: CbirOr311PI 98 175 . KQ414815.1 475539 475770 + 138 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475540 475770 138 + . gene_id 3 ; sequence CbirOr311PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475540 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475540 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475540 475770 138 + . alignment_id 3 ; Query CbirOr311PI ; Align 475540 99 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr311PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 0 -> 79 Target range: 447014 -> 447671 1 : MetAspPheIleGlyGluGlnTyrTyrAsnLeuAsnArgIleLeuLeuValCysValG : 20 |||||||||:!!||| ! :!!||||||!:!||||||!:! ||||||..!! |||| MetAspPheLeuGlyTyrGluTyrTyrSerLeuAsnGlnGlnLeuLeuThrLeuValG 447015 : ATGGACTTCCTCGGGTACGAGTACTATAGCCTCAATCAACAGCTTTTGACGTTGGTCG : 447072 21 : lyLeuTrpProTyrGlyThrSerSerLeuLysLysIleGlnIleIlePhePheGluAl : 39 |||||||||||||| !! !! !!.!|||! ! :!! ! ! !! !!:!.!. ! lyLeuTrpProTyrLysArgTyrLysLeuThrPheLeuTyrAsnThrTyrMetLeuPh 447073 : GACTGTGGCCGTACAAGAGGTACAAGTTGACATTCCTTTACAATACCTACATGCTGTT : 447129 40 : aIlePheIleSerPheLeuLeuCysGln >>>> Target Intron 1 >>>> L : 49 !.!!||||||!!! !!!!!!! !||| 420 bp : ePhePheIleThrAlaPhePheLeuGln++ ++I 447130 : CTTCTTCATCACCGCTTTCTTTCTTCAGgt.........................aga : 447579 50 : euAsnValPheLeuValLysAsnCysSerIleAlaLysValMetLysIleLeuMetPh : 68 :: :::|||......! !.!.! ..!:!!! !! !:!!:!:!.. ! ! ! leMetIlePhePheThrThrGluLeuAspValAspThrIleLeuSerAspGlyAlaCy 447580 : taatgatatttttcaccACAGAATTAGACGTTGATACGATTTTAAGTGATGGTGCCTG : 447636 69 : eValIleIleAsnCysIlePheIleIleLysTyr : 79 !:!!|||!!: !|||!:!|||:!:|||||| sIleIleMetLeuLeuIleTyrIleValLysTyr 447637 : TATAATCATGTTGCTCATCTACATAGTGAAATAC : 447671 vulgar: CbirOr311PI 0 79 . KQ414815.1 447014 447671 + 113 M 48 144 5 0 2 I 0 416 3 0 2 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 447015 447671 113 + . gene_id 4 ; sequence CbirOr311PI ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 447015 447158 . + . KQ414815.1 exonerate:protein2genome:local exon 447015 447158 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 447159 447160 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 447159 447578 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 447577 447578 . + . intron_id 0 ; splice_site "Ag" KQ414815.1 exonerate:protein2genome:local cds 447579 447671 . + . KQ414815.1 exonerate:protein2genome:local exon 447579 447671 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 447015 447671 113 + . alignment_id 4 ; Query CbirOr311PI ; Align 447015 1 144 ; Align 447579 49 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr311PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 98 -> 175 Target range: 461009 -> 461240 99 : IleIleIleLeuSerSerIleSerPheIleLeuAspAlaIleIleProLeuAsnGluS : 118 ||| :!!:!! !!! !:!: !! |||!!!! !:!:! ! !! !|||..!! IleAlaLeuIleProTyrLeuProArgIlePheAlaIleValThrHisGlnAsnArgT 461010 : ATCGCGTTAATTCCGTATTTGCCGCGGATCTTCGCGATTGTGACGCATCAGAACAGAA : 461067 119 : erArgProLeuTrpLeuProIleIleValGluTyrPheValAspGlnGluArgTyrPh : 137 !!||||||||| :!!|||||||||||||||||| !||||||!!..!...!||||| hrArgProLeuLysIleProIleIleValGluTyrHisValAspHisAsnGluTyrPh 461068 : CTCGTCCGTTGAAAATACCGATCATCGTGGAGTATCACGTGGATCATAACGAGTACTT : 461124 138 : ePheAlaIleLeuIleHisThrPheMetPheValTyrValGlyCysIleThrIleAla : 156 | ! !|||:!!:!!|||! ! !.!.! ! !!:!:!!|||! ! !..!:!! ! eAspLeuIleIleLeuHisIleAsnPheCysHisPheIleGlyPheCysValValIle 461125 : CGATCTGATCATATTACACATTAACTTCTGCCACTTTATCGGCTTCTGCGTTGTTATA : 461181 157 : AlaIleAlaThrMetLeuIleAlaTyrValLeuHisAsnCysAlaIlePheGluVal : 175 :!! !! !..!! !:!:!.! !!.! !|||! !|||:!!:!:|||!!::!! SerAlaGluValThrAsnLeuValLeuAlaLysHisIleCysSerLeuPheAspLeu 461182 : TCTGCTGAAGTGACAAATTTGGTACTTGCGAAACACATTTGCTCGTTGTTCGATCTT : 461240 vulgar: CbirOr311PI 98 175 . KQ414815.1 461009 461240 + 110 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 461010 461240 110 + . gene_id 5 ; sequence CbirOr311PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 461010 461240 . + . KQ414815.1 exonerate:protein2genome:local exon 461010 461240 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 461010 461240 110 + . alignment_id 5 ; Query CbirOr311PI ; Align 461010 99 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr308 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 210 Query range: 88 -> 255 Target range: 456822 -> 457834 89 : IleLysTyrIlePheThrArgValHisTyrAspTrpThrIleLeuLysAsnGlnAlaG : 108 |||::! ! |||!:! !!.!:!! ! !!||||||! ! !|||||||||..!! !| IleArgGluIleTyrAspAsnIleAlaAspAspTrpLysSerLeuLysAsnMetGluG 456823 : ATACGGGAGATTTACGACAATATCGCTGACGATTGGAAATCATTGAAGAACATGGAAG : 456880 109 : luLeuAspIleIleGlnLysTyrAlaCysAsnAlaArgPheHisThrIleAlaPheMe : 127 ||:!!!::||||||:::||||||||| !..!!.!||| !|||:!!|||.!. luIleGluIleIleArgLysTyrAlaAsnGlyGlyArgArgPheThrLeuAlaIleAl 456881 : AAATCGagattattcgaaaatatgcGAACGGTGGCAGGAGATTTACACTTGCAATAGC : 456937 128 : t{L} >>>> Target Intron 1 >>>> {eu}LeuGlyThrPheMetCysAla : 135 {:} 214 bp {!!}! ! ! !! ! ... ! a{I}++ ++{le}SerThrTyrCysGlyAlaLeu 456938 : A{A}gt.........................ag{TT}TCTACTTATTGTGGCGCACTG : 457175 136 : GlyLeuPheIleLeuSerSerIleProPheIleLeuAsnAlaIleIleProLeuAsnG : 155 ! !:!! !! |||..! !.!!|||.!.:!!|||:!! !:!::!!|||||||||| ValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnG 457176 : GTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACG : 457235 156 : luSerArgProLeuTrpLeuProIleIleValGluTyrPheValAspGlnGluArgTy : 174 |||||||||||! ! !||| !:!!! !!.!|||||||||||||||..!:!!!:!|| luSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTy 457236 : AATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTA : 457292 175 : rPhePheAlaIleLeuThrHisIlePheMetThrThrPheAlaGlyCysIleThrLeu : 193 |.!. ! !|||:!!.!!||||||.!!! ! ! !.!. !!.!..!! !|||||| rMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeu 457293 : TATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTA : 457349 194 : AlaGlyIleAlaThrMetHisIleAlaTyrAlaLeuHisAsnCysAlaIlePheGluI : 213 .!!!.!! !! !:!!:!:! !|||.!! !!!.!|||||| !|||!.!:!:|||:!!: ThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysL 457350 : ACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGC : 457409 214 : leVal{Se} >>>> Target Intron 2 >>>> {r}TyrArgMetGluHisIl : 221 !!..!{||} 303 bp {|}||||||:!:|||||| euThr{Se}++ ++{r}TyrArgLeuGluHisSe 457410 : TTACT{AG}gt.........................ag{C}TATAGATTAGAACACTC : 457736 222 : ePheGluGluAsnIleLeuGlnMetSerLysAspIleArgGluHisIleLeuHisGlu : 240 !!!.!!:.!. !! !! !|||! ! ! !..!! !!:!..! !:!!! ! rLeuAspHisValThrSerGlnLysLeuGlySerThrLysArg------ThrTyrVal 457737 : TTTGGACCACGTTACCTCACAAAAATTGGGAAGTACCAAGAGA------ACGTACGTG : 457787 241 : ArgLeuIleHisValValTyrLeuHisArgArgAlaIleAspLeu : 255 |||||||||.!.!.!||| !!:!!||||||!:!||| !!!:||| ArgLeuIleGluAlaValAsnIleHisArgLysAlaTyrGluLeu 457788 : AGGCTGATTGAAGCTGTTAACATACACAGAAAAGCTTACGAGTTG : 457834 vulgar: CbirOr308 88 255 . KQ414815.1 456822 457834 + 210 M 39 117 S 0 1 5 0 2 I 0 210 3 0 2 S 1 2 M 86 258 S 0 2 5 0 2 I 0 299 3 0 2 S 1 1 M 20 60 G 2 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 456823 457834 210 + . gene_id 1 ; sequence CbirOr308 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 456823 456940 . + . KQ414815.1 exonerate:protein2genome:local exon 456823 456940 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 456941 456942 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 456941 457154 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457153 457154 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457155 457416 . + . KQ414815.1 exonerate:protein2genome:local exon 457155 457416 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 457417 457418 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 457417 457719 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 457718 457719 . + . intron_id 1 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457720 457834 . + . KQ414815.1 exonerate:protein2genome:local exon 457720 457834 . + . insertions 0 ; deletions 2 KQ414815.1 exonerate:protein2genome:local similarity 456823 457834 210 + . alignment_id 1 ; Query CbirOr308 ; Align 456823 89 117 ; Align 457157 129 258 ; Align 457721 216 60 ; Align 457781 238 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr308 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 136 -> 214 Target range: 461009 -> 461243 137 : LeuPheIleLeuSerSerIleProPheIleLeuAsnAlaIleIleProLeuAsnGluS : 156 :!! :!!:!! !!! !:!:||| |||!!! !:!:! ! !! !|||..!! IleAlaLeuIleProTyrLeuProArgIlePheAlaIleValThrHisGlnAsnArgT 461010 : ATCGCGTTAATTCCGTATTTGCCGCGGATCTTCGCGATTGTGACGCATCAGAACAGAA : 461067 157 : erArgProLeuTrpLeuProIleIleValGluTyrPheValAspGlnGluArgTyrPh : 175 !!||||||||| :!!|||||||||||||||||| !||||||!!..!...!||||| hrArgProLeuLysIleProIleIleValGluTyrHisValAspHisAsnGluTyrPh 461068 : CTCGTCCGTTGAAAATACCGATCATCGTGGAGTATCACGTGGATCATAACGAGTACTT : 461124 176 : ePheAlaIleLeuThrHisIlePheMetThrThrPheAlaGlyCysIleThrLeuAla : 194 | ! !|||:!! !|||||| !.!. ! !||| !|||! ! !..!:!! ! eAspLeuIleIleLeuHisIleAsnPheCysHisPheIleGlyPheCysValValIle 461125 : CGATCTGATCATATTACACATTAACTTCTGCCACTTTATCGGCTTCTGCGTTGTTATA : 461181 195 : GlyIleAlaThrMetHisIleAlaTyrAlaLeuHisAsnCysAlaIlePheGluIleV : 214 ..! !! !..!! :!!:!:!.! !||| !|||! !|||:!!:!:|||!!::!!| SerAlaGluValThrAsnLeuValLeuAlaLysHisIleCysSerLeuPheAspLeuV 461182 : TCTGCTGAAGTGACAAATTTGGTACTTGCGAAACACATTTGCTCGTTGTTCGATCTTG : 461241 215 : al : 214 || al 461242 : TC : 461243 vulgar: CbirOr308 136 214 . KQ414815.1 461009 461243 + 128 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 461010 461243 128 + . gene_id 2 ; sequence CbirOr308 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 461010 461243 . + . KQ414815.1 exonerate:protein2genome:local exon 461010 461243 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 461010 461243 128 + . alignment_id 2 ; Query CbirOr308 ; Align 461010 137 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr308 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 136 -> 214 Target range: 482004 -> 482238 137 : LeuPheIleLeuSerSerIleProPheIleLeuAsnAlaIleIleProLeuAsnGluS : 156 |||.!.:!:! ! !! ! !|||:!!|||:!!!.!|||:!!||||||||||||! LeuIleLeuCysHisMetSerSerPheValLeuAspValIleValProLeuAsnGluT 482005 : CTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTCCTCTAAACGAGA : 482062 157 : erArgProLeuTrpLeuProIleIleValGluTyrPheValAspGlnGluArgTyrPh : 175 !!||| !!! ! !!!|||:!! !:!!|||||||||:!!||||||:!!!:!|||! hrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGlnGlnLysTyrSe 482063 : CTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCAGCAGAAATATTC : 482119 176 : ePheAlaIleLeuThrHisIlePheMetThrThrPheAlaGlyCysIleThrLeuAla : 194 .!! !||| ! !||| !::.!.:!! !.!!!.!! !...! ! !:!!!.! rLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAlaThrIleIleVal 482120 : ACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCAACGATCATTGTC : 482176 195 : GlyIleAlaThrMetHisIleAlaTyrAlaLeuHisAsnCysAlaIlePheGluIleV : 214 ||||||! !|||:!! !:!! !!:: ! !||| !...::!:!:||| :!!| GlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerLeuPheThrLeuV 482177 : GGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCTTGTTCACCCTTG : 482236 215 : al : 214 || al 482237 : TA : 482238 vulgar: CbirOr308 136 214 . KQ414815.1 482004 482238 + 127 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482005 482238 127 + . gene_id 3 ; sequence CbirOr308 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482005 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 482005 482238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482005 482238 127 + . alignment_id 3 ; Query CbirOr308 ; Align 482005 137 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr308 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 145 -> 214 Target range: 475566 -> 475773 146 : IleLeuAsnAlaIleIleProLeuAsnGluSerArgProLeuTrpLeuProIleIleV : 165 ||||||:!!:!!:!::!!||||||||||||||||||||| !|||! !! !||| : IleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleArgI 475567 : ATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaa : 475624 166 : alGluTyrPheValAspGlnGluArgTyrPhePheAlaIleLeuThrHisIlePheMe : 184 ::|||||||||:::::::!!:!!!:!||||||!:! !! !:!!! !:!! !:! leGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrVa 475625 : tagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGT : 475681 185 : tThrThrPheAlaGlyCysIleThrLeuAlaGlyIleAlaThrMetHisIleAlaTyr : 203 :|||! !.!! ! ! !!! !|||! !!.!!.!! !! !.!!!!: !! ! !!:: lThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrp 475682 : AACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGG : 475738 204 : AlaLeuHisAsnCysAlaIlePheGluIleVal : 214 !! !||| ! ::::::|||||||||||| LeuGlnHisCysIleSerLeuPheGluIleVal 475739 : TTGCAACATTGCATaagtttatttgaaattgtt : 475773 vulgar: CbirOr308 145 214 . KQ414815.1 475566 475773 + 120 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475567 475773 120 + . gene_id 4 ; sequence CbirOr308 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475567 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475567 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475567 475773 120 + . alignment_id 4 ; Query CbirOr308 ; Align 475567 146 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr308 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 0 -> 54 Target range: 447014 -> 447176 1 : MetAspPheLeuGlyGluArgTyrTyrLysLeuAsnArgIleLeuLeuValCysValG : 20 ||||||||||||||| ! ..!||||||!..||||||!:! ||||||..!! |||| MetAspPheLeuGlyTyrGluTyrTyrSerLeuAsnGlnGlnLeuLeuThrLeuValG 447015 : ATGGACTTCCTCGGGTACGAGTACTATAGCCTCAATCAACAGCTTTTGACGTTGGTCG : 447072 21 : lyLeuTrpProTyrAspThrSerProLeuLysLysIleGlnIleIlePhePheGluAl : 39 |||||||||||||| ! ! !! ! !|||! ! :!! ! ! !! !!:!.!. ! lyLeuTrpProTyrLysArgTyrLysLeuThrPheLeuTyrAsnThrTyrMetLeuPh 447073 : GACTGTGGCCGTACAAGAGGTACAAGTTGACATTCCTTTACAATACCTACATGCTGTT : 447129 40 : aLeuPheLeuSerIleLeuLeuCysGlnLeuAsnValPheLeuVal : 54 !!!!|||:!!!!! !!!!!!! !|||:!! !|||!!.!!!||| ePhePheIleThrAlaPhePheLeuGlnValLeuValLeuPheVal 447130 : CTTCTTCATCACCGCTTTCTTTCTTCAGGTACTTGTTTTATTCGTG : 447176 vulgar: CbirOr308 0 54 . KQ414815.1 447014 447176 + 101 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 447015 447176 101 + . gene_id 5 ; sequence CbirOr308 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 447015 447176 . + . KQ414815.1 exonerate:protein2genome:local exon 447015 447176 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 447015 447176 101 + . alignment_id 5 ; Query CbirOr308 ; Align 447015 1 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr305 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 250 Query range: 87 -> 254 Target range: 456822 -> 457834 88 : PheLysTyrValPheAsnArgIleArgTyrAspTrpLysIleLeuLysAsnGlnAlaG : 107 .!.::! ! :!!!:!:!!!.!||| ! !!||||||||| !|||||||||..!! !| IleArgGluIleTyrAspAsnIleAlaAspAspTrpLysSerLeuLysAsnMetGluG 456823 : ATACGGGAGATTTACGACAATATCGCTGACGATTGGAAATCATTGAAGAACATGGAAG : 456880 108 : luPheGluIleIleGlnLysTyrAlaAspLysThrLysPheTyrThrIleSerPheAl : 126 ||.!!|||||||||:::|||||||||:!! !!:! !:!|||:!!:!!.!.|| luIleGluIleIleArgLysTyrAlaAsnGlyGlyArgArgPheThrLeuAlaIleAl 456881 : AAATCGagattattcgaaaatatgcGAACGGTGGCAGGAGATTTACACTTGCAATAGC : 456937 127 : a{L} >>>> Target Intron 1 >>>> {eu}LeuGlyThrSerGlyCysLeu : 134 |{:} 214 bp {!!}! ! ! !!!!|||...||| a{I}++ ++{le}SerThrTyrCysGlyAlaLeu 456938 : A{A}gt.........................ag{TT}TCTACTTATTGTGGCGCACTG : 457175 135 : GlyValLeuSerLeuSerPheValSerProIleLeuAspValIleIleProMetAsnV : 154 ! !:!! !!!!|||..!.!! !! !! !:!!||||||:!!:!::!!|||:!!|||! ValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnG 457176 : GTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACG : 457235 155 : alSerArgSerLeuArgLeuProIleValAlaGluTyrPheValAspGlnThrArgTy : 173 !|||||| !!! !..!||| !:!!..!||||||||||||||||||..!! !!:!|| luSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTy 457236 : AATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTA : 457292 174 : rPheTyrProIleMetIleHisIlePheIleValSerTyrValCysLeuMetThrLeu : 192 |.!.:!! !|||!!: ||||||.!!! ! ! :!!... !! |||||| rMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeu 457293 : TATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTA : 457349 193 : ValAlaIleIleAlaLeuLeuIleAlaTyrValMetHisAsnCysAlaIlePheGluI : 212 ..!|||! ! !:!!|||||||||.!! !!|||:!!||| !|||!.!:!:|||:!!: ThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysL 457350 : ACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGC : 457409 213 : leVal{Se} >>>> Target Intron 2 >>>> {r}TyrArgLeuGluHisMe : 220 !!..!{||} 303 bp {|}||||||||||||||| euThr{Se}++ ++{r}TyrArgLeuGluHisSe 457410 : TTACT{AG}gt.........................ag{C}TATAGATTAGAACACTC : 457736 221 : tPheAspGluLysIleLeuGluMetSerLysAspIleArgGluHisIleLeuTyrGlu : 239 !!.|||.!. ! !! !:!!! ! ! !..!! !!:!..! !|||! ! rLeuAspHisValThrSerGlnLysLeuGlySerThrLysArg------ThrTyrVal 457737 : TTTGGACCACGTTACCTCACAAAAATTGGGAAGTACCAAGAGA------ACGTACGTG : 457787 240 : ArgLeuValHisAlaValTyrLeuHisArgArgAlaThrAspMet : 254 ||||||:!!.!.|||||| !!:!!||||||!:!||| !!!::!! ArgLeuIleGluAlaValAsnIleHisArgLysAlaTyrGluLeu 457788 : AGGCTGATTGAAGCTGTTAACATACACAGAAAAGCTTACGAGTTG : 457834 vulgar: CbirOr305 87 254 . KQ414815.1 456822 457834 + 250 M 39 117 S 0 1 5 0 2 I 0 210 3 0 2 S 1 2 M 86 258 S 0 2 5 0 2 I 0 299 3 0 2 S 1 1 M 20 60 G 2 0 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 456823 457834 250 + . gene_id 1 ; sequence CbirOr305 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 456823 456940 . + . KQ414815.1 exonerate:protein2genome:local exon 456823 456940 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 456941 456942 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 456941 457154 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457153 457154 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457155 457416 . + . KQ414815.1 exonerate:protein2genome:local exon 457155 457416 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 457417 457418 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 457417 457719 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 457718 457719 . + . intron_id 1 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457720 457834 . + . KQ414815.1 exonerate:protein2genome:local exon 457720 457834 . + . insertions 0 ; deletions 2 KQ414815.1 exonerate:protein2genome:local similarity 456823 457834 250 + . alignment_id 1 ; Query CbirOr305 ; Align 456823 88 117 ; Align 457157 128 258 ; Align 457721 215 60 ; Align 457781 237 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr305 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 140 -> 213 Target range: 485710 -> 485929 141 : PheValSerProIleLeuAspValIleIleProMetAsnValSerArgSerLeuArgL : 160 ||| !!:! !|||||||||:!!:!:||||||:!!||| !!!!||| !!! !! !: PheAsnAsnSerIleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrI 485711 : TTTAACAACAGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGA : 485768 161 : euProIleValAlaGluTyrPheValAspGlnThrArgTyrPheTyrProIleMetIl : 179 !!|||||| !:!!|||:!!|||||||||||| !!:!||||||||||||||| leProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAl 485769 : TTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGC : 485825 180 : eHisIlePheIleValSerTyrValCysLeuMetThrLeuValAlaIleIleAlaLeu : 198 !|||:!! !!:!! !! ! !:!! !! !!!:..!|||:!!::! ||| aHisValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeu 485826 : ACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatatta : 485882 199 : LeuIleAlaTyrValMetHisAsnCysAlaIlePheGluIleVal : 213 ::::::||| :!!..!|||!.!|||!.!:!:!:! !|||||| IleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIleVal 485883 : attatggCGATAATACAGCACACCTGTGGTTTGTATACAATCGTT : 485929 vulgar: CbirOr305 140 213 . KQ414815.1 485710 485929 + 162 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485711 485929 162 + . gene_id 2 ; sequence CbirOr305 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485711 485929 . + . KQ414815.1 exonerate:protein2genome:local exon 485711 485929 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485711 485929 162 + . alignment_id 2 ; Query CbirOr305 ; Align 485711 141 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr305 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 142 -> 213 Target range: 482025 -> 482238 143 : SerProIleLeuAspValIleIleProMetAsnValSerArgSerLeuArgLeuProI : 162 ||| !:!!||||||||||||:!!|||:!:|||! !!!!|||!!!! !!:!!!!|||: SerPheValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProV 482026 : AGTTTCGTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAG : 482083 163 : leValAlaGluTyrPheValAspGlnThrArgTyrPheTyrProIleMetIleHisIl : 181 !! ! !|||||||||:!!|||||| !!:!|||! ! !|||! !.!!||| alSerMetGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGl 482084 : TATCAATGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCA : 482140 182 : ePheIleValSerTyrValCysLeuMetThrLeuValAlaIleIleAlaLeuLeuIle : 200 !::.!! !! ! !||| ! !! !! !:!!|||!.!||| .!!|||:!!:!! nTrpPheSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleVal 482141 : GTGGTTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTT : 482197 201 : AlaTyrValMetHisAsnCysAlaIlePheGluIleVal : 213 !!:::!! ||| !...::!:!:||| :!!||| MetTrpLeuGluHisAlaAlaSerLeuPheThrLeuVal 482198 : ATGTGGCTTGAACACGCTGCAAGCTTGTTCACCCTTGTA : 482238 vulgar: CbirOr305 142 213 . KQ414815.1 482025 482238 + 122 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482026 482238 122 + . gene_id 3 ; sequence CbirOr305 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482026 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 482026 482238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482026 482238 122 + . alignment_id 3 ; Query CbirOr305 ; Align 482026 143 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr305 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 303 -> 374 Target range: 489880 -> 490326 304 : IleValPheGlnPheTyrTyrIlePheIleAlaAsnTyrMetGlyGlnAsnIleIleA : 323 :!: !.!.|||!!.!:!||||||||||||..!||||||!!:||||||...::: : LeuCysLeuGlnLeuPheTyrIlePheIleCysAsnTyrIleGlyGlnGlyValLysA 489881 : TTGTGTCTGCAGTTGTTTTACATATTCATTTGCAATTATATTGGACAGGGagtaaaaa : 489938 324 : spIleSerValAsnLeuPheGlnThr{Th} >>>> Target Intron 1 >>>> : 332 :: ||| !.!.:!!||| ! !{! } 230 bp snCysSerSerGluValPheTyrAsp{Il}++ + 489939 : attgcagttcTGAGGTATTTTATGAC{AT}gt.........................a : 490195 333 : {r}TyrAsnThr<->GluTrpTyrAlaAlaProLeuTrpLeuGlnLysLeuIleLeu : 349 {!}! !|||!:! .!.||||||.!!||||||:!! :!!|||||||||:!:||| +{e}CysAsnSerValAsnTrpTyrThrAlaProIleAlaIleGlnLysLeuLeuLeu 490196 : g{A}TGCAACAGCGTGAATTGGTACACGGCTCCAATTGCCATACAAAAATTGCTGTTG : 490249 350 : PheIleMetGlnArgSerSerIleLysSerThrPheThrThrAlaGlyValPheAspA : 369 .!!|||||||||!.!!!!! ! !!!.|||:!!.!.||| ! !|||:!!!:! : IleIleMetGlnAsnThrIleArgAsnSerSerIleThrLeuPheGlyMetTyrIleS 490250 : ATCATTATGCAAAATACTATACGAAATTCTTCAATAACACTCTTCGGAATGTATATAT : 490309 370 : laSerLeuGluGlyPhe : 374 !!|||!!!!!:|||||| erSerPheAspGlyPhe 490310 : CGTCTTTCGATGGTTTC : 490326 vulgar: CbirOr305 303 374 . KQ414815.1 489880 490326 + 122 M 28 84 S 0 2 5 0 2 I 0 226 3 0 2 S 1 1 M 3 9 G 0 3 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 489881 490326 122 + . gene_id 4 ; sequence CbirOr305 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 489881 489966 . + . KQ414815.1 exonerate:protein2genome:local exon 489881 489966 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 489967 489968 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 489967 490196 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 490195 490196 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 490197 490326 . + . KQ414815.1 exonerate:protein2genome:local exon 490197 490326 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 489881 490326 122 + . alignment_id 4 ; Query CbirOr305 ; Align 489881 304 84 ; Align 490198 333 9 ; Align 490210 336 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr305 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 119 -> 212 Target range: 448016 -> 448295 120 : PheTyrThrIleSerPheAlaLeuLeuGlyThrSerGlyCysLeuGlyValLeuSerL : 139 ||| ...:::...:::::!:!! !.!!! !..!! :!!.!! !! !! !: PheLeuIlePheThrIleSerValValPheAlaLeuSerLeuIleSerPheThrLeuV 448017 : tttctcattttcacaatttcagtGGTGTTTGCCTTGTCTTTAATTAGCTTTACCTTGG : 448074 140 : euSerPheValSerProIleLeuAspValIleIleProMetAsnValSerArgSerLe : 158 !!..!|||||| ! ...||||||::::::!!:|||||||||||||||! ! !!! alGluPheValValHisPheLeuAspIleLeuMetProMetAsnValSerThrArgHi 448075 : TTGAGTTCGTGGTAcattttctcgatattttaATGCCAATGAACGTATCTACACGGCA : 448131 159 : uArgLeuProIleValAlaGluTyrPheValAspGlnThrArgTyrPheTyrProIle : 177 !..!||||||.!!:!! !:!!! !||| !|||||| !!:!!:!|||:!! !||| sGluLeuProPheLeuIleGlnCysPheCysAspGlnAspLysPhePheHisTyrIle 448132 : CGAGCTACCCTTCCTAATTCAATGTTTCTGTGATCAAGATAAATTCTTCCACTATATA : 448188 178 : MetIleHisIlePheIleValSerTyrValCysLeuMetThrLeuValAlaIleIleA : 197 :!::!! !:!:.!!:!!:!!!!! !:!! !! !! ..!:!!:!!|||! !! !. LeuValPheLeuIleValLeuThrIleLeuGlyGlySerValValLeuAlaThrThrT 448189 : TTAGTTTTCTTGATCGTTCTCACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAA : 448248 198 : laLeuLeuIleAlaTyrValMetHisAsnCysAlaIlePheGluIle : 212 !! !! !:!: !!:! !...||| !|||!.!:!:|||:!!||| hrThrTyrLeuIlePheSerGlnHisCysCysGlyLeuPheLysIle 448249 : CGACTTACTTGATATTCAGTCAACATTGTTGTGGATTGTTCAAAATT : 448295 vulgar: CbirOr305 119 212 . KQ414815.1 448016 448295 + 118 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448017 448295 118 + . gene_id 5 ; sequence CbirOr305 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448017 448295 . + . KQ414815.1 exonerate:protein2genome:local exon 448017 448295 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448017 448295 118 + . alignment_id 5 ; Query CbirOr305 ; Align 448017 120 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr305 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 332 -> 377 Target range: 465779 -> 465914 333 : TyrAsnThrGluTrpTyrAlaAlaProLeuTrpLeuGlnLysLeuIleLeuPheIleM : 352 |||:!!|||:!!|||||| ! !|||||| !|||||||||:!::!!||||||| TyrAspThrGlnTrpTyrArgLeuProLeuProAlaGlnLysLeuValIlePheIleM 465780 : TACGATACGCAATGGTATAGACTTCCTTTACCTGCACAAAAATTAGTGATTTTCATTA : 465837 353 : etGlnArgSerSerIleLysSerThrPheThrThrAlaGlyValPheAspAlaSerLe : 371 |||||||||||! !! !!..!:!..!||||||..!..! !:!!!:!! ! !!|||! etGlnArgSerMetLysSerAsnValPheThrValCysLysLeuTyrValProSerAr 465838 : TGCAAAGAAGCATGAAAAGTAATGTGTTCACAGTGTGCAAACTCTACGTTCCCTCGCG : 465894 372 : uGluGlyPheAlaLysLeu : 377 !:!!||| !!||||||:!! gGlnGlyValAlaLysVal 465895 : ACAAGGTGTCGCAAAGGTA : 465914 vulgar: CbirOr305 332 377 . KQ414815.1 465779 465914 + 110 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 465780 465914 110 + . gene_id 6 ; sequence CbirOr305 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 465780 465914 . + . KQ414815.1 exonerate:protein2genome:local exon 465780 465914 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 465780 465914 110 + . alignment_id 6 ; Query CbirOr305 ; Align 465780 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr305 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 332 -> 380 Target range: 441705 -> 441849 333 : TyrAsnThrGluTrpTyrAlaAlaProLeuTrpLeuGlnLysLeuIleLeuPheIleM : 352 ||||||:!! ||||||..!!.!|||||| ! !|||||||||:!!|||||||||| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 353 : etGlnArgSerSerIleLysSerThrPheThrThrAlaGlyValPheAspAlaSerLe : 371 ||..!!:!|||!!!||| !!!!! !.!.!.! !:!!|||:!!|||! ! !!!!!! etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 372 : uGluGlyPheAlaLysLeuLeuSerMet : 380 !:!!||||||:!!..!:!!:!!!!!:!: rLysGlyPheSerSerValIleCysLeu 441821 : CAAAGGTTTTTCCTCGGTAATTTGTCTT : 441849 vulgar: CbirOr305 332 380 . KQ414815.1 441705 441849 + 109 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441849 109 + . gene_id 7 ; sequence CbirOr305 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441706 441849 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441849 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441849 109 + . alignment_id 7 ; Query CbirOr305 ; Align 441706 333 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr305 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 332 -> 380 Target range: 445817 -> 445961 333 : TyrAsnThrGluTrpTyrAlaAlaProLeuTrpLeuGlnLysLeuIleLeuPheIleM : 352 ||||||:!! ||||||..!!.!|||||| ! !|||||||||:!!|||||||||| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 353 : etGlnArgSerSerIleLysSerThrPheThrThrAlaGlyValPheAspAlaSerLe : 371 ||..!!:!|||!!!||| !!!!! !.!!!.! !:!!|||:!!|||! ! !!!!!! etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 372 : uGluGlyPheAlaLysLeuLeuSerMet : 380 !:!!||||||:!!..!:!!:!!!!!:!: rLysGlyPheSerSerValIleCysLeu 445933 : CAAAGGTTTTTCCTCGGTAATTTGTCTT : 445961 vulgar: CbirOr305 332 380 . KQ414815.1 445817 445961 + 109 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 445961 109 + . gene_id 8 ; sequence CbirOr305 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445818 445961 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445961 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 445961 109 + . alignment_id 8 ; Query CbirOr305 ; Align 445818 333 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr305 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 138 -> 219 Target range: 471588 -> 471831 139 : LeuSerPheValSerProIleLeuAspValIleIleProMetAsnValSerArgSerL : 158 ||||||.!. ! !!! !|||||||||:!!|||||||||:!!|||..!|||||| !!! LeuSerMetSerProLeuIleLeuAspIleIleIleProLeuAsnThrSerArgProA 471589 : CTGTCCATGTCGCCTCTTATTCTCGATATTATAATACCTCTGAACACGTCACGTCCAC : 471646 159 : euArgLeuProIleValAlaGluTyrPheValAspGlnThrArgTyrPheTyrProIl : 177 ! !!!!|||.!!..! !!!:!:!.!! !:!!||| !..!||||||!! ||||| rgTyrPheProPheThrPheAspPheIleProAsnGlnGluGluTyrPhe***ProIl 471647 : GTTACTTTCCATTTACGTTCGATTTCATTCCCAATCAAGAGGAATACTTCTAACCGAT : 471703 178 : eMetIleHisIlePheIleValSerTyrValCysLeuMetThrLeuValAlaIleIle : 196 |! ||| ! ! !|||:!!!!! ! ! ! ||| .!!:!!:!!::!! ! eThrIlePheSerGlyIleLeuCysIleCysGlyLeuAlaAlaMetIleSerSerGlu 471704 : TACTATCTTTTCTGGCATATTGTGCATTTGTGGATTAGCAGCAATGATAAGTAGCGAG : 471760 197 : AlaLeuLeuIleAlaTyrValMetHisAsnCysAlaIlePheGluIleValSerTyrA : 216 !.!||||||!!: ! !!|||:!:||| !!!.!:!:!:!.!.|||!.!!!!! GlyLeuLeuMetMetAsnValLeuHisValArgGlyLeuTyrAsnIleAlaThr***V 471761 : GGTCTGCTTATGATGAATGTTTTACACGTACGTGGATTGTATAACATCGCTACGTGAG : 471820 217 : rgLeuGluHis : 219 !||| !||| alLeuLeuHis 471821 : TACTATTACAT : 471831 vulgar: CbirOr305 138 219 . KQ414815.1 471588 471831 + 105 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471589 471831 105 + . gene_id 9 ; sequence CbirOr305 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471589 471831 . + . KQ414815.1 exonerate:protein2genome:local exon 471589 471831 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471589 471831 105 + . alignment_id 9 ; Query CbirOr305 ; Align 471589 139 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr305 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 324 -> 374 Target range: 472680 -> 472830 325 : SerValAsnLeuPheGlnThrThrTyrAsnThrGluTrpTyrAlaAlaProLeuTrpL : 344 ..!:!!...:!!.!!... !! !||||||:!!|||||||||..!:!!|||||| : AspLeuGlyIleLeuSerLeuArgTyrAsnSerGluTrpTyrCysSerProLeuProI 472681 : GATCTAGGAATCCTTTCTCTCAGGTATAATTCTGAATGGTATTGCTCGCCGTTGCCAA : 472738 345 : euGlnLysLeuIleLeuPheIleMetGlnArgSerSerIleLysSerThrPheThrTh : 363 !!|||||||||:!!! !|||||||||||| !!!!!! !! ! ::: ||| leGlnLysLeuLeuHisPheIleMetGlnGlyArgIleAsnLeuAsnIlePhePheMe 472739 : TACAAAAATTGCTACATTTTATCATGCAGGGAAGGATAAATctgaacatattttttat : 472795 364 : rAlaGlyValPheAspAlaSerLeuGluGlyPhe : 374 |||..!|||! !!|||:!!||||||||| tTyrGlyThrPheValProSerMetGluGlyPhe 472796 : gtacGGTACATTCGTACCTTCGATGGAAGGTTTT : 472830 vulgar: CbirOr305 324 374 . KQ414815.1 472680 472830 + 103 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 472681 472830 103 + . gene_id 10 ; sequence CbirOr305 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 472681 472830 . + . KQ414815.1 exonerate:protein2genome:local exon 472681 472830 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 472681 472830 103 + . alignment_id 10 ; Query CbirOr305 ; Align 472681 325 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr295PC(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 128 -> 214 Target range: 457153 -> 457411 129 : ValPheCysHisPheAspThrLeuCysTyrValThrValGluLeuLeuProLeuIleL : 148 |||! ! !:!!! !! !.!!||| ! !..!|||:!!:!!|||!!!|||:!!:!!| ValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuL 457154 : GTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTAC : 457211 149 : euAspValIleSerProLeuAsnLysSerArgSerLeuLysLeuIleAlaAsnThrGl : 167 |||||:!!:!: !|||||||||:!!|||||| !!! !:!!||| ! !!...!!|| euAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaGl 457212 : TCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGA : 457268 168 : uTyrPheValAsnArgGluLysTyrIleTrpValMetLeuLeuHisGluIleThrAla : 186 ||||||||||:!!! !:!!||||||!!: !!!::!! !||| ||||||..! uTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCys 457269 : ATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGC : 457325 187 : IleTyrIleArgValIleThrValCysCysThrSerValThrIleMetMetTyrIleL : 206 :!! ||| !!.!! !|||:!! ..!!.!..! ! !:!!!!:! ! !!:!!| LeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValL 457326 : CTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTAC : 457385 207 : euHisAlaCysAlaLeuPheLysVal : 214 |||||!.!|||!.!|||||||||:!! euHisValCysGlyLeuPheLysLeu 457386 : TGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr295PC(F) 128 214 . KQ414815.1 457153 457411 + 161 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457154 457411 161 + . gene_id 1 ; sequence CbirOr295PC(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457154 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457154 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457154 457411 161 + . alignment_id 1 ; Query CbirOr295PC(F) ; Align 457154 129 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr295PC(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 135 -> 213 Target range: 467656 -> 467890 136 : LeuCysTyrValThrValGluLeuLeuProLeuIleLeuAspValIleSerProLeuA : 155 :!!..! !:!! !:!! !!!!! :::|||...::::::::::!! !!|||| IleAlaValIleLeuLeuProPheTyrAspIleIlePheAsnIleValThrSerLeuA 467657 : ATAGCCGTTATATTATTACCATTCTacgatataattttcaatattgtaaCATCGTTGA : 467714 156 : snLysSerArgSerLeuLysLeuIleAlaAsnThrGluTyrPheValAsnArgGluLy : 174 || !||||||..!:!!:!!||| !|||:!! !|||||||||..!:!!..!...|| snValSerArgGluIleGluLeuProAlaAspLeuGluTyrPheThrAspGluSerLy 467715 : ACGTATCACGTGAGATTGAATTACCTGCTGATCTTGAGTACTTTACAGACGAAAGCAA : 467771 175 : sTyrIleTrpValMetLeuLeuHisGluIleThrAlaIleTyrIleArgValIleThr : 193 |||| ! :!!! |||||||||! !:!!!:! ! ! !! ! !!|||! ..! sTyrTyrProIleLysLeuLeuHisValValSerHisAlaIleThrGlyValThrVal 467772 : GTATTATCCTATTAAACTGTTACATGTGGTTAGTCATGCTATCACTGGAGTGACGGTT : 467828 194 : ValCysCysThrSerValThrIleMetMetTyrIleLeuHisAlaCysAlaLeuPheL : 213 ||| !! !! !..! !|||:!::!!!!:!:!:!!! !:!!:!!||||||||||||| ValIlePheIleAspSerThrLeuLeuIlePheLeuGlnTyrSerCysAlaLeuPheL 467829 : GTGATTTTCATTGATAGTACGTTGTTGATATTCCTCCAATATTCTTGTGCGCTCTTCA : 467888 214 : ys : 213 || ys 467889 : AA : 467890 vulgar: CbirOr295PC(F) 135 213 . KQ414815.1 467656 467890 + 123 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 467657 467890 123 + . gene_id 2 ; sequence CbirOr295PC(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 467657 467890 . + . KQ414815.1 exonerate:protein2genome:local exon 467657 467890 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 467657 467890 123 + . alignment_id 2 ; Query CbirOr295PC(F) ; Align 467657 136 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr295PC(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 146 -> 214 Target range: 475566 -> 475770 147 : IleLeuAspValIleSerProLeuAsnLysSerArgSerLeuLysLeuIleAlaAsnT : 166 ||||||||| !:!:! !|||||||||:!!|||||| !! ! !! !:!: ... IleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleArgI 475567 : ATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaa : 475624 167 : hrGluTyrPheValAsnArgGluLysTyrIleTrpValMetLeuLeuHisGluIleTh : 185 |||||||||:::|||..!:!!||||||.!!!:::!!! :!!:!!:!!:!!! !.. leGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrVa 475625 : tagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGT : 475681 186 : rAlaIleTyrIleArgValIleThrValCysCysThrSerValThrIleMetMetTyr : 204 !.!!||| !:!: !! !! !||| ! ...|||..!!.!! !.!!! |||!:: lThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrp 475682 : AACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGG : 475738 205 : IleLeuHisAlaCysAlaLeuPheLysVal : 214 :!:! !|||..! :::||||||:::::: LeuGlnHisCysIleSerLeuPheGluIle 475739 : TTGCAACATTGCATaagtttatttgaaatt : 475770 vulgar: CbirOr295PC(F) 146 214 . KQ414815.1 475566 475770 + 113 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475567 475770 113 + . gene_id 3 ; sequence CbirOr295PC(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475567 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475567 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475567 475770 113 + . alignment_id 3 ; Query CbirOr295PC(F) ; Align 475567 147 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr295PC(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 140 -> 214 Target range: 464615 -> 464840 141 : ValGluLeuLeuProLeuIleLeuAspValIleSerProLeuAsnLysSerArgSerL : 160 :!!|||:!!|||||| !||||||||||||:!!:!!|||||||||:!!|||||||||! LeuGluValLeuProAspIleLeuAspValValAlaProLeuAsnGluSerArgSerH 464616 : CTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATGAATCTCGTTCTC : 464673 161 : euLysLeuIleAlaAsnThrGluTyrPheValAsnArgGluLysTyrIleTrpValMe : 179 !:!!! !:!! !!.!.!!|||!:!|||:!!!.! !.....! ! !!:::!!:! isGlnTyrLeuIleThrAlaGluPhePheIleThrAspSerSerProAsnTyrIleVa 464674 : ATCAATACTTAATTACCGCGGAATTTTTCATCACTGATAGTTCGCCGAATTATATCGT : 464730 180 : tLeuLeuHisGluIleThrAlaIleTyrIleArgValIleThrValCysCysThrSer : 198 : !! ! !! ! ! !! ! !|||! !! !:!!|||..! !.!!||| lThrCysValGlyThrAspIleThrLeuIleMetGlyValThrThrIleIleAlaSer 464731 : AACTTGTGTTGGTACGGATATTACTCTTATCATGGGAGTCACGACAATAATTGCCTCC : 464787 199 : ValThrIleMetMetTyrIleLeu<->HisAlaCysAlaLeuPheLysVal : 214 ! !|||.!!! .!.! :!:||| ||| !||||||:!!||||||:!! GluThrPheThrPheLeuLeuLeuGlnHisIleCysAlaMetPheLysIle 464788 : GAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAATGTTCAAAATC : 464840 vulgar: CbirOr295PC(F) 140 214 . KQ414815.1 464615 464840 + 103 M 66 198 G 0 3 M 8 24 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464616 464840 103 + . gene_id 4 ; sequence CbirOr295PC(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464616 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464616 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464616 464840 103 + . alignment_id 4 ; Query CbirOr295PC(F) ; Align 464616 141 198 ; Align 464817 207 24 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr292PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 88 -> 174 Target range: 457153 -> 457411 89 : ValPheCysHisPheGlyThrSerCysTyrLeuIleLeuGlnLeuLeuProLeuIleL : 108 |||! ! !:!!! !|||.!! ! ! ! !! |||||||||!!!|||:!!:!!| ValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuL 457154 : GTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTAC : 457211 109 : euAspValIleValProLeuAsnAlaSerArgSerLeuAsnLeuLeuAlaIleThrGl : 127 |||||:!!:!:||||||||||||! !|||||| !!! !.!.|||! ! !! !.!!|| euAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaGl 457212 : TCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGA : 457268 128 : uTyrPheValAsnArgGluLysTyrAlaCysValIleLeuLeuHisGluLeuLeuThr : 146 ||||||||||:!!! !:!!|||||| ! ! !|||:!! !||| :!! ! ! uTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCys 457269 : ATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGC : 457325 147 : IleTyrValGlyThrIleThrLeuCysSerThrGlyLeuIlePheMetThrHisLeuL : 166 :!! :!!!.!.!!! !|||||| :!!!.!! !! !:!!.!!!!:|||:!!:!!| LeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValL 457326 : CTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTAC : 457385 167 : euHisGlyCysAlaLeuLeuLysVal : 174 |||||! !|||!.!|||!!!|||:!! euHisValCysGlyLeuPheLysLeu 457386 : TGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr292PI 88 174 . KQ414815.1 457153 457411 + 155 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457154 457411 155 + . gene_id 1 ; sequence CbirOr292PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457154 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457154 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457154 457411 155 + . alignment_id 1 ; Query CbirOr292PI ; Align 457154 89 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr292PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 106 -> 174 Target range: 485722 -> 485926 107 : IleLeuAspValIleValProLeuAsnAlaSerArgSerLeuAsnLeuLeuAlaIleT : 126 |||||||||:!!:!::!!||||||||| !!!!||| !!! !!..:!!! ! !! !: IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 127 : hrGluTyrPheValAsnArgGluLysTyrAlaCysValIleLeuLeuHisGluLeuLe : 145 !!|||:!!||||||:!!!:!:!!|||||| !! ! !||| ! !|||! :!!|| erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 146 : uThrIleTyrValGlyThrIleThrLeuCysSerThrGlyLeuIlePheMetThrHis : 164 | !:!! !:!!|||.!!|||..!||| !|||||| ::::::...|||.!! uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 165 : LeuLeuHisGlyCysAlaLeuLeuLysVal : 174 :!!! !||| !|||!.!|||! !! !:!! IleGlnHisThrCysGlyLeuTyrThrIle 485895 : ATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr292PI 106 174 . KQ414815.1 485722 485926 + 125 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485926 125 + . gene_id 2 ; sequence CbirOr292PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485926 125 + . alignment_id 2 ; Query CbirOr292PI ; Align 485723 107 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr300PSE(S/F) Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 111 -> 212 Target range: 130469 -> 130166 112 : LysGlnTyrLeuAsnAsnSerArgLeuPheMetIleIlePheThrSerPheAlaThrM : 131 !:!:!! !!!||| !!.!! !:!! !.!. !|||.!! !! !|||:!! !: ArgGluThrPheAsnProLysMetIleAspPheSerIleIleProValPheSerPheL 130469 : AGGGAGACATTTAACCCTAAAATGATCGATTTTTCCATTATTCCAGTGTTCTCATTTT : 130412 132 : etSerValCysAlaPheThrPheIleGlnLeuLeuProValThrLeuAspValIleIl : 150 !! !:!! !!.!|||..!|||:!:|||:!!|||||| !! !|||! !:!!||| euLeuLeuLeuGlyPheValPheLeuGlnIleLeuProGlnIleLeuGlyIleIleSe 130411 : TGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAATTTTAGGCATAATTTC : 130355 151 : eProLeuAsnValSerArgProArgArgPheTyrPheArgLeuGluLeuPheIleAsn : 169 !||||||!.!! !! !!.! !!!.!!:!!!. ! !!||| !|||! !|||:!!:!! rProLeuThrGluIleAsnThrAsnLysLeuLeuValArgThrGluTyrPheValAsp 130354 : ACCTCTAACCGAGATCAATACTAACAAATTACTCGTTCGAACCGAATACTTTGTCGAC : 130298 170 : LysGluLysTyrPheTyrValIleAlaPheTyrThrIleLeuSerLeuCysValSerA : 189 ! :!! ! |||.!!|||:!!|||.!!.!!:!!.!!! !:!!:!!:!! !|||! TyrLysAspTyrIleTyrLeuIleThrIleHisAlaThrIleAlaIleMetCysSerV 130297 : TACAAAGATTACATTTATCTAATCACGATCCACGCGACTATAGCAATAATGTGTAGTG : 130238 190 : laAlaThrIleValSerThrGlyAlaSerLeuLeuThrPheGlyGlnHisSerCysAl : 208 .!.!!! ! !:!!|||!:!! ! ||| !..!|||! ! !!!. alThrMetGlnIleSerSerAspIleLeuAsnAsnIlePheMetMetHisIleSerGl 130237 : TGACTATGCAAATTAGCAGCGATAttttgaataacatatttatGATGCACATCAGTGG : 130181 209 : aMetLeuLysIle : 212 !|||!!!:!!:!! yMetPheGluVal 130180 : AATGTTCGAGGTA : 130167 vulgar: CbirOr300PSE(S/F) 111 212 . KQ414817.1 130469 130166 - 104 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130167 130469 104 - . gene_id 1 ; sequence CbirOr300PSE(S/F) ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130167 130469 . - . KQ414817.1 exonerate:protein2genome:local exon 130167 130469 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 130167 130469 104 - . alignment_id 1 ; Query CbirOr300PSE(S/F) ; Align 130470 112 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr307 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 124 -> 214 Target range: 130433 -> 130163 125 : IlePheMetLeuIleAlaThrSerValValLeuGlyValIleSerLeuAlaPheAlaS : 144 |||.!! :!!.!!:!! !! !:!!:!!|||||| !!:!!! !||| !.!! ! IleIleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuP 130433 : ATTATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCC : 130376 145 : erThrIleLeuAspIleIleIleProLeuAsnGluSerArgProLeuArgLeuProIl : 163 !! !||||||! !|||||| !||||||!.!|||! !!.! !! !!:!|||! !:! roGlnIleLeuGlyIleIleSerProLeuThrGluIleAsnThrAsnLysLeuLeuVa 130375 : CGCAAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAACAAATTACTCGT : 130319 164 : eGluValGluTyrPheValAspGlnGlnArgTyrPheTyrAlaIleSerLeuHisMet : 182 !..!..!||||||||||||||| ! :!! !|||.!!||| !|||!!!:!!||| ! lArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAla 130318 : TCGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCG : 130262 183 : GlyMetThrPheTyrAlaGlyMetMetIleMetThrAlaIleThrThrIlePheIleA : 202 !!!:.!!.!. ..!.!!:!!! !!:...! !::!! ! !! ::: ThrIleAlaIleMetCysSerValThrMetGlnIleSerSerAspIleLeuAsnAsnI 130261 : ACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaataaca : 130202 203 : laTyrValSerHisAsnCysAlaIlePheGluIleVal : 214 :::::!! !|||! ! !!!.!!!:||||||:!!:!! lePheMetMetHisIleSerGlyMetPheGluValIle 130201 : tatttatGATGCACATCAGTGGAATGTTCGAGGTAATT : 130164 vulgar: CbirOr307 124 214 . KQ414817.1 130433 130163 - 109 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130164 130433 109 - . gene_id 1 ; sequence CbirOr307 ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130164 130433 . - . KQ414817.1 exonerate:protein2genome:local exon 130164 130433 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 130164 130433 109 - . alignment_id 1 ; Query CbirOr307 ; Align 130434 125 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr306 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 138 Query range: 123 -> 256 Target range: 130433 -> 129939 124 : LeuPheThrLeuLeuAlaLeuSerIleSerLeuGlyIleIleValLeuCysSerValP : 143 :!!.!! !!:!!!!!:!!!!!! !:!! !||||||.!!:!! !!||| ! !:!!| IleIleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuP 130433 : ATTATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCC : 130376 144 : roSerLeuLeuAspIleIleIleProLeuAsnGluSerArgProSerTrpLeuProIl : 162 ||..!:!!|||! !|||||| !||||||!.!|||! !!.! !!!:! |||! !:! roGlnIleLeuGlyIleIleSerProLeuThrGluIleAsnThrAsnLysLeuLeuVa 130375 : CGCAAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAACAAATTACTCGT : 130319 163 : eValAlaGluTyrPheValAspGlnGlnArgTyrPheTyrAlaIleLeuIleHisIle : 181 ! !.!!||||||||||||||| ! :!! !|||.!!||| !||| !|||||| lArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAla 130318 : TCGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCG : 130262 182 : PheIleValValTyrAlaGlySerMetAlaIleAlaSerValAlaGlyMetMetLeuG : 201 !|||!.!:!! ..!.!! !! ! ! !||| !! ! ::: ThrIleAlaIleMetCysSerValThrMetGlnIleSerSerAspIleLeuAsnAsnI 130261 : ACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaataaca : 130202 202 : lyTyrValLeuHisAsnCysAlaIlePheLysIleAla{Se} >>>> Target In : 214 :::::!:!!|||! ! !!!.!!!:|||:!!:!! !{.!} 95 b lePheMetMetHisIleSerGlyMetPheGluValIle{Gl}++ 130201 : tatttatGATGCACATCAGTGGAATGTTCGAGGTAATT{GG}gt.............. : 130159 215 : tron 1 >>>> {r}TyrArgIleGluHisIlePheAspGluLysIleLeuGlnMet : 228 p {!} ! !:!!||||||:!:||||||:!! ! ! ! ++{y}IleValValGluHisLeuPheAspLysCysLysSerAlaAsp 130158 : ...........ag{G}ATTGTTGTCGAGCATCTGTTCGACAAATGCAAAAGTGCTGAC : 130026 229 : SerLysThrIleGlyGlnTyrValLeuTyrGluArgLeuIleHisAlaValHisLeuH : 248 ..!!!.! ! !! !.!. :!!!!!||| !||||||:!:!.! !:!!:!!:!!| GluAsnIleAspGluAsnLeuIlePheTyrThrArgLeuLeuArgIleMetAsnMetH 130025 : GAGAATATCGACGAAAATCTGATTTTCTACACACGGTTGCTGCGTATTATGAACATGC : 129966 249 : isArgArgAlaValAspLeuThrAsn : 256 |||||||| ::: |||..!::: isArgArgAsnLeuLysLeuValSer 129965 : acagaagaaatttaaagttaGTGTCA : 129940 vulgar: CbirOr306 123 256 . KQ414817.1 130433 129939 - 138 M 90 270 S 0 2 5 0 2 I 0 91 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 129940 130433 138 - . gene_id 1 ; sequence CbirOr306 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 130162 130433 . - . KQ414817.1 exonerate:protein2genome:local exon 130162 130433 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 130160 130161 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 130067 130161 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 130067 130068 . - . intron_id 0 ; splice_site "AG" KQ414817.1 exonerate:protein2genome:local cds 129940 130066 . - . KQ414817.1 exonerate:protein2genome:local exon 129940 130066 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 129940 130433 138 - . alignment_id 1 ; Query CbirOr306 ; Align 130434 124 270 ; Align 130066 215 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr299PN(F) Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 75 -> 145 Target range: 130433 -> 130223 76 : PheIleThrValGlyMetPheIleThrLeuAlaValPheGlyPheTyrGlnPheLeuP : 95 .!!||| !!||| ! |||:!: !||| !! !|||! !|||! |||.!!|||| IleIleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuP 130433 : ATTATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCC : 130376 96 : roAspLeuLeuAspMetIleAlaProLeuAsnAspSerArgLysHisPheLeuThrPh : 114 ||.!.:!!|||! !!!:|||:!!||||||!.!!!:! !!.!! :!! ||| ! ! roGlnIleLeuGlyIleIleSerProLeuThrGluIleAsnThrAsnLysLeuLeuVa 130375 : CGCAAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAACAAATTACTCGT : 130319 115 : eAspAlaGluTyrPheValAspGlnLysGluTyrPheTyrProIleValThrHisGly : 133 ! .!!||||||||||||||| ! |||!!:|||.!!|||! !|||..!! !|||!.! lArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAla 130318 : TCGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCG : 130262 134 : LeuThrAlaValTyrIleGlyGlyThrValGlyIle : 145 !! !|||:!! !.!!! !|||:!! !||| ThrIleAlaIleMetCysSerValThrMetGlnIle 130261 : ACTATAGCAATAATGTGTAGTGTGACTATGCAAATT : 130224 vulgar: CbirOr299PN(F) 75 145 . KQ414817.1 130433 130223 - 117 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130224 130433 117 - . gene_id 1 ; sequence CbirOr299PN(F) ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130224 130433 . - . KQ414817.1 exonerate:protein2genome:local exon 130224 130433 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 130224 130433 117 - . alignment_id 1 ; Query CbirOr299PN(F) ; Align 130434 76 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr293 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 332 -> 391 Target range: 128560 -> 128309 333 : ThrTyrAsnGlyLeuTrpTyrAlaAlaProLeuArgThrGlnLysLeuLeuLeuPheI : 352 !:!||| !!.! !|||||| !||||||:::::::::||||||:::|||||||||: SerTyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheL 128560 : AGCTATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCC : 128503 353 : leMetGlnLysThrThrValLysValThrLeuIleCysGlyGlyIlePheValAlaSe : 371 !!|||!!.!:! !! !! ! ! !! !|||! ! !..!:!! !!!.!|||.! euMetHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGl 128502 : TCATGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGG : 128446 372 : rLeuGluGlyPheValThr >>>> Target Intron 1 >>>> LeuValAsnA : 381 ! !||| !!:!!.!||| 74 bp :!!|||.!.. yAsnGluLeuTyrAlaThr++ ++MetValGlnT 128445 : TAACGAGTTGTACGCTACCgt.........................agaTGGTGCAGA : 128342 382 : laAlaValSerTyrPheThrValIleTyrSer : 391 !!!.! !!|||||||||||||||:!!|||||| hrGlyPheSerTyrPheThrValLeuTyrSer 128341 : CTGGTTTCTCCTACTTTACGGTTCTCTACTCG : 128310 vulgar: CbirOr293 332 391 . KQ414817.1 128560 128309 - 101 M 45 135 5 0 2 I 0 70 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128310 128560 101 - . gene_id 1 ; sequence CbirOr293 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128560 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128560 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128310 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128310 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128310 128560 101 - . alignment_id 1 ; Query CbirOr293 ; Align 128561 333 135 ; Align 128352 378 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr303INT Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 308 -> 368 Target range: 128560 -> 128306 309 : ThrTyrAsnValGlnTrpTyrThrAlaProIleLysIleGlnLysLeuLeuLeuPheV : 328 !:!||| !!.!:!!||||||! !||||||:::||| ||||||:::|||||||||: SerTyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheL 128560 : AGCTATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCC : 128503 329 : alMetGlnSerThrThrLysSerTyrPheLeuAsnIleGlyLysLeuValIleIleSe : 347 !!|||!!.!!! !! !:!! !!! ! |||!!.:!: !...|||||| ! .! euMetHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGl 128502 : TCATGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGG : 128446 348 : rIleGluGlyPheAlaGln >>>> Target Intron 1 >>>> LeuIleSerL : 357 !! !||| !!:!||| 74 bp :!!:!:..! yAsnGluLeuTyrAlaThr++ ++MetValGlnT 128445 : TAACGAGTTGTACGCTACCgt.........................agaTGGTGCAGA : 128342 358 : euSerIleSerTyrPheThrValIleTyrSerLeu : 368 !.!!.!!|||||||||||||||:!!||||||||| hrGlyPheSerTyrPheThrValLeuTyrSerLeu 128341 : CTGGTTTCTCCTACTTTACGGTTCTCTACTCGTTG : 128307 vulgar: CbirOr303INT 308 368 . KQ414817.1 128560 128306 - 110 M 45 135 5 0 2 I 0 70 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128307 128560 110 - . gene_id 1 ; sequence CbirOr303INT ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128560 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128560 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128307 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128307 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128307 128560 110 - . alignment_id 1 ; Query CbirOr303INT ; Align 128561 309 135 ; Align 128352 354 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr303INT Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 113 -> 190 Target range: 130397 -> 130166 114 : TyrAlaIlePheGluAlaMetProIleIleLeuAspMetIlePheProLeuAsnGluT : 133 !:!!.!.!!!!.:!! !:!:||| !||||||! !!!:|||! ||||||!.!|||! PheValPheLeuGlnIleLeuProGlnIleLeuGlyIleIleSerProLeuThrGluI 130397 : TTCGTTTTCTTGCAAATTCTCCCGCAAATTTTAGGCATAATTTCACCTCTAACCGAGA : 130340 134 : hrArgProArgGluIleHisAlaLeuThrGluTyrPheIleAspGluArgThrTyrPh : 152 !!.! !!!.!:!!:!!! !!.!! !||||||||||||:!!||| ! !:! !|||.! leAsnThrAsnLysLeuLeuValArgThrGluTyrPheValAspTyrLysAspTyrIl 130339 : TCAATACTAACAAATTACTCGTTCGAACCGAATACTTTGTCGACTACAAAGATTACAT : 130283 153 : eCysProIleLeuCysHisTrpLeuIleGlyLeuMetLeuGlyAlaTyrValValAla : 171 !! !! !||| ! !||| ! !|||!.!:!!|||! !.!!!.! !:!! ! ! eTyrLeuIleThrIleHisAlaThrIleAlaIleMetCysSerValThrMetGlnIle 130282 : TTATCTAATCACGATCCACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATT : 130226 172 : ValThrCysThrLeuHisLeuValTyrMetGluHisIleCysGlyLeuLeuLysVal : 190 !!:! !! |||::: ::::::||| !|||||| !!|||:!!!!!:!!||| SerSerAspIleLeuAsnAsnIlePheMetMetHisIleSerGlyMetPheGluVal 130225 : AGCAGCGATAttttgaataacatatttatGATGCACATCAGTGGAATGTTCGAGGTA : 130167 vulgar: CbirOr303INT 113 190 . KQ414817.1 130397 130166 - 107 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130167 130397 107 - . gene_id 2 ; sequence CbirOr303INT ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130167 130397 . - . KQ414817.1 exonerate:protein2genome:local exon 130167 130397 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 130167 130397 107 - . alignment_id 2 ; Query CbirOr303INT ; Align 130398 114 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr291INT Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 234 -> 293 Target range: 128560 -> 128309 235 : ThrTyrAsnGlyLeuTrpTyrAlaAlaProLeuArgThrGlnLysLeuIleLeuPheI : 254 !:!||| !!.! !|||||| !||||||:::::::::||||||::::!!||||||: SerTyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheL 128560 : AGCTATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCC : 128503 255 : leMetGlnLysThrThrValLysIleThrLeuValCysGlyGlyIlePheValAlaSe : 273 !!|||!!.!:! !! !! ! ! !! !||| ! !..!:!! !!!.!|||.! euMetHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGl 128502 : TCATGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGG : 128446 274 : rLeuGluGlyPheValThr >>>> Target Intron 1 >>>> LeuValAsnT : 283 ! !||| !!:!!.!||| 74 bp :!!|||.!.| yAsnGluLeuTyrAlaThr++ ++MetValGlnT 128445 : TAACGAGTTGTACGCTACCgt.........................agaTGGTGCAGA : 128342 284 : hrAlaValSerTyrPheThrValIleTyrSer : 293 ||!.! !!|||||||||||||||:!!|||||| hrGlyPheSerTyrPheThrValLeuTyrSer 128341 : CTGGTTTCTCCTACTTTACGGTTCTCTACTCG : 128310 vulgar: CbirOr291INT 234 293 . KQ414817.1 128560 128309 - 105 M 45 135 5 0 2 I 0 70 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128310 128560 105 - . gene_id 1 ; sequence CbirOr291INT ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128560 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128560 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128310 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128310 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128310 128560 105 - . alignment_id 1 ; Query CbirOr291INT ; Align 128561 235 135 ; Align 128352 280 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr311PI Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 96 -> 220 Target range: 130403 -> 129936 97 : MetGlyIleIleIleLeuSerSerIleSerPheIleLeuAspAlaIleIleProLeuA : 116 :!:|||.!!:!!.!!|||..!! !:!! !! ||||||! ! !||| !||||||! LeuGlyPheValPheLeuGlnIleLeuProGlnIleLeuGlyIleIleSerProLeuT 130403 : CTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAATTTTAGGCATAATTTCACCTCTAA : 130346 117 : snGluSerArgProLeuTrpLeuProIleIleValGluTyrPheValAspGlnGluAr : 135 .!|||! !!.! !! ! |||! !:!! !..!||||||||||||||| ! :!! hrGluIleAsnThrAsnLysLeuLeuValArgThrGluTyrPheValAspTyrLysAs 130345 : CCGAGATCAATACTAACAAATTACTCGTTCGAACCGAATACTTTGTCGACTACAAAGA : 130289 136 : gTyrPhePheAlaIleLeuIleHisThrPheMetPheValTyrValGlyCysIleThr : 154 !|||.!!!:! !||| !||||||.!! !!!: :!! !.!! ! !! ! pTyrIleTyrLeuIleThrIleHisAlaThrIleAlaIleMetCysSerValThrMet 130288 : TTACATTTATCTAATCACGATCCACGCGACTATAGCAATAATGTGTAGTGTGACTATG : 130232 155 : IleAlaAlaIleAlaThrMetLeuIleAlaTyrValLeuHisAsnCysAlaIlePheG : 174 ! !::!! !! !! ::: :::::!:!!|||! ! !!!.!!!:|||| GlnIleSerSerAspIleLeuAsnAsnIlePheMetMetHisIleSerGlyMetPheG 130231 : CAAATTAGCAGCGATAttttgaataacatatttatGATGCACATCAGTGGAATGTTCG : 130172 175 : luValAla{Se} >>>> Target Intron 1 >>>> {r}TyrArgIleGluHi : 182 ||||| !{.!} 95 bp {!} ! !:!!||||| luValIle{Gl}++ ++{y}IleValValGluHi 130171 : AGGTAATT{GG}gt.........................ag{G}ATTGTTGTCGAGCA : 130053 183 : sIlePheAspLysThrIleLeuGlnMetSerLysAspIleArgGlnHisIleLeuTyr : 201 |:!:||||||||| !! ! ! ..!!!. ! !..!.!.! |||!!!||| sLeuPheAspLysCysLysSerAlaAspGluAsnIleAspGluAsnLeuIlePheTyr 130052 : TCTGTTCGACAAATGCAAAAGTGCTGACGAGAATATCGACGAAAATCTGATTTTCTAC : 129996 202 : GluArgLeuIleHisAlaValTyrLeuHisArgArgAlaValAspLeuAlaAsnIle : 220 !||||||:!:!.! !:!! !!:!!||||||||| ::: |||!.!::::!! ThrArgLeuLeuArgIleMetAsnMetHisArgArgAsnLeuLysLeuValSerVal 129995 : ACACGGTTGCTGCGTATTATGAACATGCacagaagaaatttaaagttaGTGTCAGTT : 129937 vulgar: CbirOr311PI 96 220 . KQ414817.1 130403 129936 - 126 M 80 240 S 0 2 5 0 2 I 0 91 3 0 2 S 1 1 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 129937 130403 126 - . gene_id 1 ; sequence CbirOr311PI ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 130162 130403 . - . KQ414817.1 exonerate:protein2genome:local exon 130162 130403 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 130160 130161 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 130067 130161 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 130067 130068 . - . intron_id 0 ; splice_site "AG" KQ414817.1 exonerate:protein2genome:local cds 129937 130066 . - . KQ414817.1 exonerate:protein2genome:local exon 129937 130066 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 129937 130403 126 - . alignment_id 1 ; Query CbirOr311PI ; Align 130404 97 240 ; Align 130066 178 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr307 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 123 -> 213 Target range: 1224303 -> 1224030 124 : IleIlePheMetLeuIleAlaThrSerValValLeuGlyValIleSerLeuAlaPh : 142 :::|||||| ! !! !|||:!!|||! ! !!!:|||!!! !!!! LeuIlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLe 1224303 : ttaattttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATT : 1224249 143 : eAlaSerThrIleLeuAspIleIleIleProLeuAsnGluSerArgProLeuArgL : 161 . !!:! !!:!!||||||:!!:!! ||||||||||||!!!||||||! !|||| uIleAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgL 1224248 : GATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGC : 1224192 162 : euProIleGluValGluTyr<->PheValAspGlnGlnArgTyrPheTyrAlaIle : 178 || !:!! !|||...||| |||:!!|||:!! ! ..!:!!||||||::!:!: euLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerVal 1224191 : TTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTG : 1224138 179 : SerLeuHisMetGlyMetThrPheTyrAlaGlyMetMetIleMetThrAlaIleTh : 197 !:!!!!|||:!: !! !:! ! !:!! !! !|||!!:!!:! !|||:!: AsnPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAs 1224137 : AATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGA : 1224081 198 : rThrIlePheIleAlaTyrValSerHisAsnCysAlaIlePheGluIle : 213 !! !:!!!:!|||.!! !:!!! !||| !|||!.!:!:|||! !:!: pMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaVal 1224080 : TATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: CbirOr307 123 213 . KQ414851.1 1224303 1224030 - 139 M 44 132 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224303 139 - . gene_id 1 ; sequence CbirOr307 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224303 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224303 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224303 139 - . alignment_id 1 ; Query CbirOr307 ; Align 1224304 124 132 ; Align 1224169 168 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr307 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 145 -> 213 Target range: 1243809 -> 1243605 146 : IleLeuAspIleIleIleProLeuAsnGluSerArgProLeuArgLeuProIleGl : 164 |||||||||:!!:!! !||||||||||||!!!||| !!! !! ! |||:: IleLeuAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLy 1243809 : ATATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaa : 1243755 165 : uValGluTyrPheValAspGlnGlnArgTyrPheTyrAlaIleSerLeuHisMetG : 183 :::::::|||.!. !!|||...:::::: ||||||:::::: :!!:!!! | sLeuGlnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrG 1243754 : attgcaataccTGTTCGACAtggagaagaatttttattcattatacGTCTACACTG : 1243698 184 : lyMetThrPheTyrAlaGlyMetMetIleMetThrAlaIleThrThrIlePheIle : 201 || ! !! !:! ! !||||||:!!!!:! !.!!||| !.!!:!!!:!:!: lyTrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrVal 1243697 : GCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTG : 1243644 202 : AlaTyrValSerHisAsnCysAlaIlePheGluIle : 213 !.! !:!! !|||!..|||!.!:!!|||! :!! ValIleIleHisHisThrCysGlyLeuPheAlaVal 1243643 : GTAATCATTCATCACACGTGTGGCTTATTCGCTGTT : 1243606 vulgar: CbirOr307 145 213 . KQ414851.1 1243809 1243605 - 127 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243809 127 - . gene_id 2 ; sequence CbirOr307 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243809 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243809 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243809 127 - . alignment_id 2 ; Query CbirOr307 ; Align 1243810 146 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr306 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 303 -> 377 Target range: 1242883 -> 1242661 304 : LeuIlePheGlnLeuTyrTyrMetPheIleIleAsnTyrValGlyGlnAspIleIl : 322 |||! !.!!.!.:!!||| !! !|||::: ... ! !:: LeuThrIleAspMetTyrAlaLysPheValHisTyrAsnPheGlnSerValProLe 1242883 : TTGACCATTGACATGTATGCTAAGTTTGtacattataattttcaatcagtTCCAct : 1242829 323 : eAsnIleSerThrAsnValPheHisThrAlaTyrAsnThrGluTrpTyrAlaAlaP : 341 :|||||| ... ||| !.! !||||||:!! !|||||| !.!!| uAsnIlePhePheThrAsnPheThrAsnArgTyrAsnSerMetTrpTyrGlnThrP 1242828 : caatatattttttactaattttaccAATAGATATAACTCGATGTGGTATCAAACAC : 1242772 342 : roLeuTrpLeuGlnLysLeuIleLeuValIleLeuGlnArgSerSerLeuLysSer : 359 ||:!!|||:!!||||||:!!:!!! !:!!:!!! ! !||||||.!! ! !!!! roValTrpIleGlnLysIleLeuHisIleValGlnIleArgSerGlyLysProCys 1242771 : CGGTGTGGATTCAAAAAATACTTCATATAGTACAAATAAGGTCTGGCAAACCGTGC : 1242718 360 : ThrLeuIleAlaGlyGlyIleValAspAlaSerLeuGluGlyPheAlaLysLeu : 377 ! !|||:!!|||||||||:!! !!!: !!:!:!!|||..!|||!.!..!:!! LysLeuValAlaGlyGlyLeuTyrGluMetAsnIleGluAsnPheGlySerVal 1242717 : AAATTGGTAGCAGGAGGATTATACGAAATGAACATTGAGAATTTTGGATCAGTA : 1242662 vulgar: CbirOr306 303 377 . KQ414851.1 1242883 1242661 - 116 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242662 1242883 116 - . gene_id 1 ; sequence CbirOr306 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1242662 1242883 . - . KQ414851.1 exonerate:protein2genome:local exon 1242662 1242883 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242662 1242883 116 - . alignment_id 1 ; Query CbirOr306 ; Align 1242884 304 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr306 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 141 -> 212 Target range: 1224246 -> 1224030 142 : ValProSerLeuLeuAspIleIleIleProLeuAsnGluSerArgProSerTrpLe : 160 :!! ! !!:!!||||||:!!:!! ||||||||||||!!!|||||| !! !!|| IleAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLe 1224246 : ATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCT : 1224192 161 : uProIleValAlaGluTyr<->PheValAspGlnGlnArgTyrPheTyrAlaIleL : 178 | !:!! !!.!...||| |||:!!|||:!! ! ..!:!!||||||::!:!: uLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValA 1224191 : TTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGA : 1224135 179 : euIleHisIlePheIleValValTyrAlaGlySerMetAlaIleAlaSerValAla : 196 !.!!|||:!!!:!! ! !||| !:!! !!.!!||| !||| !:!!|||! ! snPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAsp 1224134 : ATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGAT : 1224081 197 : GlyMetMetLeuGlyTyrValLeuHisAsnCysAlaIlePheLysIle : 212 !:!: :!! ! !:!!!!!||| !|||!.!:!:||| !:!: MetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaVal 1224080 : ATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: CbirOr306 141 212 . KQ414851.1 1224246 1224030 - 114 M 25 75 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224246 114 - . gene_id 2 ; sequence CbirOr306 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224246 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224246 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224246 114 - . alignment_id 2 ; Query CbirOr306 ; Align 1224247 142 75 ; Align 1224169 167 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr306 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 131 -> 212 Target range: 1243848 -> 1243605 132 : IleSerLeuGlyIleIleValLeuCysSerValProSerLeuLeuAspIleIleIl : 150 .!!|||:!! !.!!:!!:!!!!! ! !:!!||| !!:!!||||||:!!:!! PheSerIleIlePheValLeuPheProLeuIleProProIleLeuAspValValSe 1243848 : TTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTC : 1243794 151 : eProLeuAsnGluSerArgProSerTrpLeuProIleValAlaGluTyrPheValA : 169 !||||||||||||!!!||| !! !! ||| :::|||.!. !!| rProLeuAsnGluThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheA 1243793 : ACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCG : 1243737 170 : spGlnGlnArgTyrPheTyrAlaIleLeuIleHisIlePheIleValValTyrAla : 187 ||...:::::: ||||||:::::: :!!:!!! ! ! ! !!:! ! spMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMet 1243736 : ACAtggagaagaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATG : 1243683 188 : GlySerMetAlaIleAlaSerValAlaGlyMetMetLeuGlyTyrValLeuHisAs : 206 !! !|||!.!||| !!!!:!!! !!.!:!: :!!! ! !:!!! !|||!. ThrMetMetValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisTh 1243682 : ACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACAC : 1243626 207 : nCysAlaIlePheLysIle : 212 .|||!.!:!!||| :!! rCysGlyLeuPheAlaVal 1243625 : GTGTGGCTTATTCGCTGTT : 1243606 vulgar: CbirOr306 131 212 . KQ414851.1 1243848 1243605 - 105 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243848 105 - . gene_id 3 ; sequence CbirOr306 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243848 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243848 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243848 105 - . alignment_id 3 ; Query CbirOr306 ; Align 1243849 132 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr296 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 131 -> 215 Target range: 1224279 -> 1224030 132 : PheIleLeuValLeuValThrValIleGlnPheLeuProAsnIleLeuAspValIl : 150 .!.:!!|||:!!:!! !! ! !.!!! !!!.:!! ! :!!|||||||||:! IleValLeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAspValVa 1224279 : ATAGTTCTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGT : 1224225 151 : eLeuProLeuAspGluProArgProArgArgLeuLeuValThrAlaGluTyrPheI : 169 ! !||||||:!!||| !!||||||||||||||||||:!! !!!.!...|||.!.. lAlaProLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIleP 1224224 : TGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATAT : 1224168 170 : leValLysThrAsnAspLysTyrTyrTyrThrArgValPheHisGluLeuValPhe : 187 !!:!! ! ! !!!!: :!!!:!|||!:! ! !|||||| !! !..! ! heIleAspGluTyrGlu---HisPheTyrSerValAsnPheHisLeuTyrThrSer 1224167 : TCATAGACGAGTACGAG---CATTTTTATAGCGTGAATTTTCACCTATACACCAGC : 1224117 188 : LeuThrMetCysAlaSerMetIlePheAlaThrAlaThrGlnLeuLeuThrPheAl : 206 :!!! ! |||!.!! !||||||.!!|||..!! !! ! !! !:!!|||.!! ValIleSerCysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIl 1224116 : GTGATTTCCTGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCAT : 1224060 207 : aPheHisSerPheGlyMetPheLysIle : 215 !|||||| !! !|||:!!||| !:!: ePheHisLeuCysGlyLeuPheAlaVal 1224059 : TTTTCACCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: CbirOr296 131 215 . KQ414851.1 1224279 1224030 - 118 M 43 129 G 1 0 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224279 118 - . gene_id 1 ; sequence CbirOr296 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224279 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224279 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224279 118 - . alignment_id 1 ; Query CbirOr296 ; Align 1224280 132 129 ; Align 1224151 176 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr305 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 133 -> 212 Target range: 1224270 -> 1224030 134 : LeuGlyValLeuSerLeuSerPheValSerProIleLeuAspValIleIleProMe : 152 |||! ! !:!!|||!!! !!!!.:!!!:!|||:!!|||||||||:!! |||:! LeuValTyrMetSerPheProLeuIleAsnProValLeuAspValValAlaProLe 1224270 : TTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTT : 1224216 153 : tAsnValSerArgSerLeuArgLeuProIleValAlaGluTyr<->PheValAspG : 170 :|||! !!!!||| !!! !|||||| !:!! !!.!...||| |||:!!|||: uAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleAspG 1224215 : AAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACG : 1224159 171 : lnThrArgTyrPheTyrProIleMetIleHisIlePheIleValSerTyrValCys : 188 !! !..!:!!|||||| !:!:! .!!|||:!!!:!! ! ! ! ! !||| luTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSerCys 1224158 : AGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGC : 1224105 189 : LeuMetThrLeuValAlaIleIleAlaLeuLeuIleAlaTyrValMetHisAsnCy : 207 !|||! !:!!:!!|||:!: ! !|||! !|||.!! !:!!.!.||| !|| GlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCy 1224104 : GGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTG : 1224048 208 : sAlaIlePheGluIle : 212 |!.!:!:|||! !:!: sGlyLeuPheAlaVal 1224047 : CGGATTGTTCGCAGTG : 1224031 vulgar: CbirOr305 133 212 . KQ414851.1 1224270 1224030 - 131 M 33 99 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224270 131 - . gene_id 1 ; sequence CbirOr305 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224270 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224270 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224270 131 - . alignment_id 1 ; Query CbirOr305 ; Align 1224271 134 99 ; Align 1224169 167 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr305 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 140 -> 212 Target range: 1243821 -> 1243605 141 : PheValSerProIleLeuAspValIleIleProMetAsnValSerArgSerLeuAr : 159 !!.:!! !!|||||||||||||||:!! !|||:!:|||! !!!!||||||! !! LeuIleProProIleLeuAspValValSerProLeuAsnGluThrArgSerArgIl 1243821 : TTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGAT : 1243767 160 : gLeuProIleValAlaGluTyrPheValAspGlnThrArgTyrPheTyrProIleM : 178 ! ||| :::|||.!. !!|||... ::: |||||| ::: eGluValIleLysLeuGlnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuT 1243766 : AGaagtaataaaattgcaataccTGTTCGACAtggagaagaatttttattcattat : 1243710 179 : etIleHisIlePheIleValSerTyrValCysLeuMetThrLeuValAlaIleIle : 196 :!!:!!! ! ! !|||!:!:!! !:!!|||..!:!!:!!.!!||| ! yrValTyrThrGlyTrpCysSerPheMetThrMetMetValIleIleThrIleAsp 1243709 : acGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGAC : 1243656 197 : AlaLeuLeuIleAlaTyrValMetHisAsnCysAlaIlePheGluIle : 212 ||||||! !:!:!.! !:!! |||!..|||!.!:!!|||! :!! AlaLeuTyrValValIleIleHisHisThrCysGlyLeuPheAlaVal 1243655 : GCGTTATATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCTGTT : 1243606 vulgar: CbirOr305 140 212 . KQ414851.1 1243821 1243605 - 122 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243821 122 - . gene_id 2 ; sequence CbirOr305 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243821 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243821 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243821 122 - . alignment_id 2 ; Query CbirOr305 ; Align 1243822 141 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr304CTE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 136 Query range: 130 -> 212 Target range: 1224279 -> 1224030 131 : LeuCysPheLeuGlyLeuLeuThrLeuGlyCysValProArgIleLeuAspIleIl : 149 :!! !.!.|||! !! !:!!!:!!!! !! :!! !! !:!!||||||:!!:! IleValLeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAspValVa 1224279 : ATAGTTCTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGT : 1224225 150 : eMetProLeuAsnGluSerArgProArgGlnLeuProIleIleValGluTyr<->P : 167 ! !||||||||||||!!!|||||||||::!||| !:!! !|||...||| | lAlaProLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIleP 1224224 : TGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATAT : 1224168 168 : heIleAspGluGluThrTyrPheTyrAlaIleLeuIleHisIleAlaThrAlaIle : 185 ||||||||||| ! !:!!||||||::!:!: !.!!|||:!! !|||::!:!: heIleAspGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerVal 1224167 : TCATAGACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTG : 1224114 186 : TyrAlaGlySerValThrLeuAlaAlaCysAlaThrMetProIleSerTyrIleLe : 204 !:!! !!.!!:!!! !:!! !||| ! !! !:!: !|||!!! !|||!! IleSerCysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePh 1224113 : ATTTCCTGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTT : 1224057 205 : uHisValCysAlaMetPheLysIle : 212 !|||:!!|||!.!:!!||| !:!: eHisLeuCysGlyLeuPheAlaVal 1224056 : TCACCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: CbirOr304CTE 130 212 . KQ414851.1 1224279 1224030 - 136 M 36 108 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224279 136 - . gene_id 1 ; sequence CbirOr304CTE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224279 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224279 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224279 136 - . alignment_id 1 ; Query CbirOr304CTE ; Align 1224280 131 108 ; Align 1224169 167 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr304CTE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 141 -> 212 Target range: 1243818 -> 1243605 142 : ValProArgIleLeuAspIleIleMetProLeuAsnGluSerArgProArgGlnLe : 160 :!!|||! !|||||||||:!!:!! ||||||||||||!!!||| !!||| ! IleProProIleLeuAspValValSerProLeuAsnGluThrArgSerArgIleGl 1243818 : ATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGa : 1243764 161 : uProIleIleValGluTyrPheIleAspGluGluThrTyrPheTyrAlaIleLeuI : 179 ||| ::::::|||.!..!!||| ||| ||||||:::::: : uValIleLysLeuGlnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrV 1243763 : agtaataaaattgcaataccTGTTCGACAtggagaagaatttttattcattatacG : 1243707 180 : leHisIleAlaThrAlaIleTyrAlaGlySerValThrLeuAlaAlaCysAlaThr : 197 !!:!!! !!.! !..! !:! ! !! !:!!..!:!! !.!! ! !.!! alTyrThrGlyTrpCysSerPheMetThrMetMetValIleIleThrIleAspAla 1243706 : TCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCG : 1243653 198 : MetProIleSerTyrIleLeuHisValCysAlaMetPheLysIle : 212 :!: !:!: ! !|||! !|||..!|||!.!:!:||| :!! LeuTyrValValIleIleHisHisThrCysGlyLeuPheAlaVal 1243652 : TTATATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCTGTT : 1243606 vulgar: CbirOr304CTE 141 212 . KQ414851.1 1243818 1243605 - 108 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243818 108 - . gene_id 2 ; sequence CbirOr304CTE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243818 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243818 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243818 108 - . alignment_id 2 ; Query CbirOr304CTE ; Align 1243819 142 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr312 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 134 -> 213 Target range: 1224270 -> 1224030 135 : LeuThrCysPhePheLeuProPheAlaProSerIleLeuAspIlePheMetProLe : 153 |||..!! !.!. !!!!|||!!. ! ! !!:!!||||||:!! !! !||||| LeuValTyrMetSerPheProLeuIleAsnProValLeuAspValValAlaProLe 1224270 : TTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTT : 1224216 154 : uAsnValSerArgProArgGlnLeuLeuPheProGlyGluTyr<->PheValAspG : 171 ||||! !!!!|||||||||::!||||||.!!|||! !...||| |||:!!|||: uAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleAspG 1224215 : AAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACG : 1224159 172 : lnGluLysTyrPheTyrAlaIleTrpLeuHisLeuAspIleThrLeuSerLeuVal : 189 !! ! :!!:!!||||||::!:!: !!!|||||| !!! !!:!:!!! !! ! ! luTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSerCys 1224158 : AGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGC : 1224105 190 : ValThrThrLeuIleGlyThrGluSerLeuTyrIleIleTyrIleGlnHisValCy : 208 ! !! !! !:!!|||!.!..!!!:! !|||||||||! ! !||| |||:!!|| GlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCy 1224104 : GGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTG : 1224048 209 : sGlyMetPheGlnVal : 213 ||||:!!||| !||| sGlyLeuPheAlaVal 1224047 : CGGATTGTTCGCAGTG : 1224031 vulgar: CbirOr312 134 213 . KQ414851.1 1224270 1224030 - 139 M 33 99 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224270 139 - . gene_id 1 ; sequence CbirOr312 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224270 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224270 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224270 139 - . alignment_id 1 ; Query CbirOr312 ; Align 1224271 135 99 ; Align 1224169 168 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr302PN Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 56 -> 155 Target range: 1234365 -> 1234065 57 : TyrLysAlaLysAlaGluTyrHisThrLysLeuPheLeuThrIleIleIleSerSe : 75 !:!::: !..! !||| ! ! !!!!|||! ! !! !:!!:!:|||! PheArgLeuSerHisGluGlySerIleValPhePheSerAspThrLeuLeuSerPh 1234365 : TTTCGTTTATCACACGAAGGATCGATCGTGTTCTTCTCAGATACATTACTGTCCTT : 1234311 76 : rCysIleIleTyrGlyIlePheGluAlaMetProValIleLeuAspIleIleLeuP : 94 ! :!!:!!!:! !:!: !! ! !:!: ! !.!!||||||:!!:!!|||| eMetValValPheLeuLeuValProLeuValPheProPheLeuAspValValLeuP 1234310 : CATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGTCGTCCTTC : 1234254 95 : roLeuAsnLysThrArgProArgGluIleHisAlaLeuLeuGluTyr<->PheIle : 111 ||||||||:!!||||||||||||:!! ! ! !:!!.!.||| !:!.!! roLeuAsnGluThrArgProArgGlnGlnGlyPheArgValAsnTyrLeuTyrPhe 1234253 : CGTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTATATTTC : 1234200 112 : AspLysAspAlaTyrPhePheProIleLeuCysHisTrpLeuIleGlyLeuIleIl : 130 |||:!!! ! !||||||||| !:!:! !! !!!.! ! ! ||| !:!!:! AspGluAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaValVa 1234199 : GACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAGTCGT : 1234143 131 : eGlyCysTyrThrIleIleCysValSerThrSerLeuMetIleCysValGlnHisI : 149 !! ! ! ! !|||||| !|||..!:!!! !! !|||||| :!!!!.||| lValValMetIleIleIleThrValAspSerLeuTyrMetIleIleIleHisHisA 1234142 : TGTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGATAATAATTCACCATG : 1234086 150 : leSerGlyLeuPheLysVal : 155 !||||||:!!||| ||| laSerGlyMetPheAlaVal 1234085 : CCAGCGGAATGTTCGCCGTG : 1234066 vulgar: CbirOr302PN 56 155 . KQ414851.1 1234365 1234065 - 120 M 53 159 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234066 1234365 120 - . gene_id 1 ; sequence CbirOr302PN ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234066 1234365 . - . KQ414851.1 exonerate:protein2genome:local exon 1234066 1234365 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234066 1234365 120 - . alignment_id 1 ; Query CbirOr302PN ; Align 1234366 57 159 ; Align 1234204 110 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr302PN Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 76 -> 155 Target range: 1243842 -> 1243605 77 : IleIleTyrGlyIlePheGluAlaMetProValIleLeuAspIleIleLeuProLe : 95 ||||||!:!! !:!!||| ! !!!:||| !|||||||||:!!:!!! !||||| IleIlePheValLeuPheProLeuIleProProIleLeuAspValValSerProLe 1243842 : ATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCT : 1243788 96 : uAsnLysThrArgProArgGluIleHisAlaLeuLeuGluTyrPheIleAspLysA : 114 ||||:!!|||||| !!||| ! |||:::|||.!..!!|||! : uAsnGluThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspMetG 1243787 : TAATGAGACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACAtgg : 1243731 115 : spAlaTyrPhePheProIleLeuCysHisTrpLeuIleGlyLeuIleIleGlyCys : 132 :: |||::: ::: !:!! ! !!! !.!!!!: ! luLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMet 1243730 : agaagaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATG : 1243677 133 : TyrThrIleIleCysValSerThrSerLeuMetIleCysValGlnHisIleSerGl : 151 ..!|||||| !:!!..!.!!! !! !:!!:!! !:!!!!.|||! !!!|| MetValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGl 1243676 : ATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGG : 1243620 152 : yLeuPheLysVal : 155 ||||||| ||| yLeuPheAlaVal 1243619 : CTTATTCGCTGTT : 1243606 vulgar: CbirOr302PN 76 155 . KQ414851.1 1243842 1243605 - 106 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243842 106 - . gene_id 2 ; sequence CbirOr302PN ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243842 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243842 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243842 106 - . alignment_id 2 ; Query CbirOr302PN ; Align 1243843 77 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr302PN Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 76 -> 155 Target range: 1224270 -> 1224030 77 : IleIleTyrGlyIlePheGluAlaMetProValIleLeuAspIleIleLeuProLe : 95 :!!:!!||| !! !||| ! !!!: ! !:!!||||||:!!:!! !||||| LeuValTyrMetSerPheProLeuIleAsnProValLeuAspValValAlaProLe 1224270 : TTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTT : 1224216 96 : uAsnLysThrArgProArgGluIleHisAlaLeuLeuGluTyr<->PheIleAspL : 113 ||||:!!||||||||||||..!:!! !! !:!!...||| |||||||||: uAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleAspG 1224215 : AAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACG : 1224159 114 : ysAspAlaTyrPhePheProIleLeuCysHisTrpLeuIleGlyLeuIleIleGly : 131 !! !!! !:!!|||!:! !:!: !! !||| ! !! !.!!:!!||| ! !! luTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSerCys 1224158 : AGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGC : 1224105 132 : CysTyrThrIleIleCysValSerThrSerLeuMetIleCysValGlnHisIleSe : 150 ! ! !||||||..!|||..!! !! !! !!!:! ! !:!! |||:!!!! GlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCy 1224104 : GGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTG : 1224048 151 : rGlyLeuPheLysVal : 155 !||||||||| !||| sGlyLeuPheAlaVal 1224047 : CGGATTGTTCGCAGTG : 1224031 vulgar: CbirOr302PN 76 155 . KQ414851.1 1224270 1224030 - 106 M 33 99 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224270 106 - . gene_id 3 ; sequence CbirOr302PN ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224270 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224270 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224270 106 - . alignment_id 3 ; Query CbirOr302PN ; Align 1224271 77 99 ; Align 1224169 110 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr303INT Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 100 -> 190 Target range: 1224303 -> 1224030 101 : IleLeuLeuSerLeuSerIleIleThrSerCysValPheTyrAlaIlePheGluAl : 119 ::::::...||| |||:!: ! ! ! :!! ! ||| !! !||| ! LeuIlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLe 1224303 : ttaattttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATT : 1224249 120 : aMetProIleIleLeuAspMetIlePheProLeuAsnGluThrArgProArgGluI : 138 !!!: ! :!!||||||:!::!! ||||||||||||||||||||||||..!: uIleAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgL 1224248 : GATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGC : 1224192 139 : leHisAlaLeuThrGluTyr<->PheIleAspGluArgThrTyrPheCysProIle : 155 !! !! !..!...||| |||||||||||| ! !:!!|||! ! !:!: euLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerVal 1224191 : TTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTG : 1224138 156 : LeuCysHisTrpLeuIleGlyLeuMetLeuGlyAlaTyrValValAlaValThrCy : 174 !! !||| ! !! !.!!:!!!!:! ! !!!.! :!!:!! !!.!..! AsnPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAs 1224137 : AATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGA : 1224081 175 : sThrLeuHisLeuValTyrMetGluHisIleCysGlyLeuLeuLysVal : 190 !! !|||:!!:!!..! !!!: |||:!!|||||||||!!! !||| pMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaVal 1224080 : TATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: CbirOr303INT 100 190 . KQ414851.1 1224303 1224030 - 107 M 44 132 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224303 107 - . gene_id 1 ; sequence CbirOr303INT ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224303 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224303 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224303 107 - . alignment_id 1 ; Query CbirOr303INT ; Align 1224304 101 132 ; Align 1224169 145 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr303INT Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 98 -> 190 Target range: 1243881 -> 1243605 99 : IleThrIleLeuLeuSerLeuSerIleIleThrSerCysValPheTyrAlaIlePh : 117 ||| :!!! !|||||| !!!!:!:.!! !! !! :!!.!.!:!!.!:!!|| IleLeuValSerLeuSerGlyThrLeuPheTyrPheSerIleIlePheValLeuPh 1243881 : atactcGTCTCTCTTTCAGGTACTTTGTTCTATTTCTCGATAATATTCGTATTATT : 1243827 118 : eGluAlaMetProIleIleLeuAspMetIlePheProLeuAsnGluThrArgProA : 136 | ! !!!:||| !|||||||||:!::!!! |||||||||||||||||| !!| eProLeuIleProProIleLeuAspValValSerProLeuAsnGluThrArgSerA 1243826 : TCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTC : 1243770 137 : rgGluIleHisAlaLeuThrGluTyrPheIleAspGluArgThrTyrPheCysPro : 154 || ! :::|||.!..!!||| ... ||| rgIleGluValIleLysLeuGlnTyrLeuPheAspMetGluLysAsnPheTyrSer 1243769 : GGATAGaagtaataaaattgcaataccTGTTCGACAtggagaagaatttttattca : 1243716 155 : IleLeuCysHisTrpLeuIleGlyLeuMetLeuGlyAlaTyrValValAlaValTh : 173 ::: !:!! ! !!! !.!.:!! ! ! |||:!! !..!! LeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMetValIleIleThrIl 1243715 : ttatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTAT : 1243659 174 : rCysThrLeuHisLeuValTyrMetGluHisIleCysGlyLeuLeuLysVal : 190 ! !.!!|||:!!:!!||| !!!:.!.|||! |||||||||!!! ||| eAspAlaLeuTyrValValIleIleHisHisThrCysGlyLeuPheAlaVal 1243658 : AGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCTGTT : 1243606 vulgar: CbirOr303INT 98 190 . KQ414851.1 1243881 1243605 - 103 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243881 103 - . gene_id 2 ; sequence CbirOr303INT ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243881 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243881 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243881 103 - . alignment_id 2 ; Query CbirOr303INT ; Align 1243882 99 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr311PI Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 104 -> 175 Target range: 1224246 -> 1224030 105 : IleSerPheIleLeuAspAlaIleIleProLeuAsnGluSerArgProLeuTrpLe : 123 |||!:! :!!||||||!.!:!! ||||||||||||!!!||||||! ! !!|| IleAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLe 1224246 : ATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCT : 1224192 124 : uProIleIleValGluTyr<->PheValAspGlnGluArgTyrPhePheAlaIleL : 141 | !:!! !|||...||| |||:!!|||:!! ! ..!:!!|||!:!::!:!: uLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValA 1224191 : TTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGA : 1224135 142 : euIleHisThrPheMetPheValTyrValGlyCysIleThrIleAlaAlaIleAla : 159 !.!!||| !!:!! !||| ! ! !! ! !!:! !||| !|||:!:! ! snPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAsp 1224134 : ATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGAT : 1224081 160 : ThrMetLeuIleAlaTyrValLeuHisAsnCysAlaIlePheGluVal : 175 ! !:!:! !|||.!! !:!!!!!||| !|||!.!:!:|||! !||| MetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaVal 1224080 : ATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: CbirOr311PI 104 175 . KQ414851.1 1224246 1224030 - 107 M 25 75 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224246 107 - . gene_id 1 ; sequence CbirOr311PI ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224246 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224246 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224246 107 - . alignment_id 1 ; Query CbirOr311PI ; Align 1224247 105 75 ; Align 1224169 130 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr311PI Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 98 -> 175 Target range: 1243836 -> 1243605 99 : IleIleIleLeuSerSerIleSerPheIleLeuAspAlaIleIleProLeuAsnGl : 117 .!!:!!:!!!!! !!! !||| !! |||||||||!.!:!! !||||||||||| PheValLeuPheProLeuIleProProIleLeuAspValValSerProLeuAsnGl 1243836 : TTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGA : 1243782 118 : uSerArgProLeuTrpLeuProIleIleValGluTyrPheValAspGlnGluArgT : 136 |!!!||| !!! ! ||| ::::::|||.!. !!|||...|||::: uThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspMetGluLysA 1243781 : GACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACAtggagaaga : 1243725 137 : yrPhePheAlaIleLeuIleHisThrPheMetPheValTyrValGlyCysIleThr : 154 |||::::::::: :!!:!!||| ! !! ! !!:!:!! ! !!:..! snPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMetVal 1243724 : atttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTT : 1243671 155 : IleAlaAlaIleAlaThrMetLeuIleAlaTyrValLeuHisAsnCysAlaIlePh : 173 ||| !.!!|||! !.!!:!:! !:!:!.! !:!!! !|||!..|||!.!:!!|| IleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGlyLeuPh 1243670 : ATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTTATT : 1243614 174 : eGluVal : 175 |! ||| eAlaVal 1243613 : CGCTGTT : 1243606 vulgar: CbirOr311PI 98 175 . KQ414851.1 1243836 1243605 - 105 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243836 105 - . gene_id 2 ; sequence CbirOr311PI ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243836 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243836 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243836 105 - . alignment_id 2 ; Query CbirOr311PI ; Align 1243837 99 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr295PC(F) Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 132 -> 214 Target range: 1243851 -> 1243605 133 : PheAspThrLeuCysTyrValThrValGluLeuLeuProLeuIleLeuAspValIl : 151 !:! !:!!:!! !:!||| ! !! !|||:!!|||! !||||||||||||:! TyrPheSerIleIlePheValLeuPheProLeuIleProProIleLeuAspValVa 1243851 : TATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGT : 1243797 152 : eSerProLeuAsnLysSerArgSerLeuLysLeuIleAlaAsnThrGluTyrPheV : 170 !||||||||||||:!!!!!||||||! !! ! ::: ... :::|||.!. lSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuGlnTyrLeuP 1243796 : TTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgcaataccTGT : 1243740 171 : alAsnArgGluLysTyrIleTrpValMetLeuLeuHisGluIleThrAlaIleTyr : 188 !!:!!! |||||| ...::: ::: :!!:!! ! !..! !:! heAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPhe 1243739 : TCGACAtggagaagaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTC : 1243686 189 : IleArgValIleThrValCysCysThrSerValThrIleMetMetTyrIleLeuHi : 207 !!:! !:!!!!:..!:!! ! !! !..!!.! ! !:!!:!: !|||! !|| MetThrMetMetValIleIleThrIleAspAlaLeuTyrValValIleIleHisHi 1243685 : ATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCA : 1243629 208 : sAlaCysAlaLeuPheLysVal : 214 |.!!|||!.!|||||| ||| sThrCysGlyLeuPheAlaVal 1243628 : CACGTGTGGCTTATTCGCTGTT : 1243606 vulgar: CbirOr295PC(F) 132 214 . KQ414851.1 1243851 1243605 - 108 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243851 108 - . gene_id 1 ; sequence CbirOr295PC(F) ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243851 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243851 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243851 108 - . alignment_id 1 ; Query CbirOr295PC(F) ; Align 1243852 133 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr289 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 133 -> 221 Target range: 1641 -> 1905 134 : CysLeuLeuCysAlaGlyIleLeuGlnPheLeuProValIleLeuAspLeuIleLeuProLe : 154 |||:!!:!! !! ! !! ! ! !||| !|||||||||:!!:!!|||||| CysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProLy 1642 : TGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAA : 1702 155 : uAsnGluSerArgProLeuHisLeuIleValPheAlaGluTyrPheIleAsnGlnGluGluT : 175 !|||||||||||| !:!! ! !||| ! ||| ! ||||||! !:!!:!!.!.:!!| sAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysT 1703 : AAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGT : 1765 176 : yrLeuTyrAlaMetLeuLeuHisGluIlePheAlaValHisLeuAlaAlaIleAlaLeuCys : 195 || ! !!!::!! !||| ! ! !!.!:!!! :!!!.! ! !!.!! !! ! yrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrPhe 1766 : ACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTC : 1825 196 : CysThrSerThrThrIleMetSerTyrIleLeuHisGlyCysAlaLeuLeuLysValAlaSe : 216 ..! !..!|||!:! !!!:! ! !:!:! !|||||||||!.!|||||| |||:!!.! AlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGl 1826 : GCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGG : 1888 217 : rTyrArgValGluAsn : 221 . ::::::...::: y***LysIleArgSer 1889 : gtaaaaaattcgatcg : 1905 vulgar: CbirOr289 133 221 . KQ414921.1 1641 1905 + 105 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1642 1905 105 + . gene_id 1 ; sequence CbirOr289 ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1642 1905 . + . KQ414921.1 exonerate:protein2genome:local exon 1642 1905 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1642 1905 105 + . alignment_id 1 ; Query CbirOr289 ; Align 1642 134 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr307 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 129 -> 213 Target range: 1632 -> 1884 130 : AlaThrSerValValLeuGlyValIleSerLeuAlaPheAlaSerThrIleLeuAspIleIl : 150 |||! ! ! !|||:!! ! !!:!:||| ! !! ! .!! !! !||||||||||||:! AlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLe 1633 : GCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTT : 1693 151 : eIleProLeuAsnGluSerArgProLeuArgLeuProIleGluValGluTyrPheValAspG : 171 !:!!||| !|||||||||||| !:!! !! ! ! ! !!.! ! ||||||..!|||: uLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspG 1694 : ACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACG : 1756 172 : lnGlnArgTyrPheTyrAlaIleSerLeuHisMetGlyMetThrPheTyrAlaGlyMetMet : 191 !!!!.!:!||| ! !|||! ! !||||||!.! ..!.!! !.!! !.!. luHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyr 1757 : AGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTAC : 1816 192 : IleMetThrAlaIleThrThrIlePheIleAlaTyrValSerHisAsnCysAlaIlePheGl : 212 :!: !||| ! !|||! !!:!||| ! !|||..!|||..!|||!.!:!:!!.! ValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAl 1817 : GTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGC : 1879 213 : uIle : 213 :!: aVal 1880 : CGTG : 1884 vulgar: CbirOr307 129 213 . KQ414921.1 1632 1884 + 106 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1633 1884 106 + . gene_id 1 ; sequence CbirOr307 ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1633 1884 . + . KQ414921.1 exonerate:protein2genome:local exon 1633 1884 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1633 1884 106 + . alignment_id 1 ; Query CbirOr307 ; Align 1633 130 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr290PSE(F) Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 301 -> 389 Target range: 807314 -> 807578 302 : PheIlePheIleValPheGlnValAsnTyrMetPheValLeuAsnTyrValGlyGluG : 321 |||:!!.!.!!:||| ! !:!!! ! ! :!!!:!:!!! ! !|||!.!|||.!. PheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnT 807315 : TTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACA : 807372 322 : luLeuGlnAsnHisGlyMetGluLeuPheGlnAlaThrTyrAspGlyLeuTrpTyrAl : 340 !|||:!!:::!.. ! |||:!! ||||||.!!||||||..!||||||||| hrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrAr 807373 : CACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCG : 807429 341 : aAlaProLeuArgThrGlnLysLeuLeuLeuPheIleMetGlnLysThrThrValLys : 359 !..!! ! !!.!.!! !:! !||||||!!.|||!!:!!.::! !!.! ! gCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerPro 807430 : TTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCT : 807486 360 : ValThrLeuIleCysGlyGlyIlePheValAlaSerLeuGluGlyPheValThrLeuV : 379 ! !:!!! !..!||| !.!! !! ! !!:!||| !||| ! !:!!: TyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleL 807487 : TATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATAC : 807546 380 : alAsnAlaAlaValSerTyrLeuThrValMet : 389 !!!!.|||:!!! !|||||||||:!!|||||| euLysAlaSerGlySerTyrLeuSerValMet 807547 : TGAAAGCTTCTGGCTCGTATCTGTCTGTAATG : 807578 vulgar: CbirOr290PSE(F) 301 389 . KQ414940.1 807314 807578 + 106 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807315 807578 106 + . gene_id 1 ; sequence CbirOr290PSE(F) ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807315 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807315 807578 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807315 807578 106 + . alignment_id 1 ; Query CbirOr290PSE(F) ; Align 807315 302 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr304CTE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 141 -> 212 Target range: 32530 -> 32743 142 : ValProArgIleLeuAspIleIleMetProLeuAsnGluSerArgProArgGlnLeuPro : 161 :!!||| !|||:!!|||:!:||| !||||||||||||||||||! !!.! !|||||| LeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHisValLeuPro 32531 : CTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCG : 32588 162 : IleIleValGluTyrPheIleAspGluGluThrTyrPheTyrAlaIleLeuIleHisIle : 181 ! !! !|||||||||:!!|||:::::: |||||| !||| !:!:|||!!: TyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMet 32589 : TACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATG : 32648 182 : AlaThrAlaIleTyrAlaGlySerValThrLeuAlaAlaCysAlaThrMetProIleSer : 201 ! !.!!:!! ! !||| !..!..! !.!!||| :::::: ||| LeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhe 32649 : CTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattc : 32708 202 : TyrIleLeuHisValCysAlaMetPheLysIle : 212 ::::::!!!||||||||||||! |||!!.||| PheMetPheHisValCysAlaLysPheAsnIle 32709 : ttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr304CTE 141 212 . KQ415081.1 32530 32743 + 151 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32531 32743 151 + . gene_id 1 ; sequence CbirOr304CTE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32531 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32531 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32531 32743 151 + . alignment_id 1 ; Query CbirOr304CTE ; Align 32531 142 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr306 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 141 -> 212 Target range: 32530 -> 32743 142 : ValProSerLeuLeuAspIleIleIleProLeuAsnGluSerArgProSerTrpLeuPro : 161 :!!|||! !:!!:!!|||:!:||| ||||||||||||||||||! ! ! |||||| LeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHisValLeuPro 32531 : CTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCG : 32588 162 : IleValAlaGluTyrPheValAspGlnGlnArgTyrPheTyrAlaIleLeuIleHisIle : 181 !!.!!.!|||||||||||||||||||||:::|||||| !||| !:!:|||!!: TyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMet 32589 : TACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATG : 32648 182 : PheIleValValTyrAlaGlySerMetAlaIleAlaSerValAlaGlyMetMetLeuGly : 201 .!! ..!||| ! !||| !! !!.! !.!!:!!||| ...:::...::: LeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhe 32649 : CTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattc : 32708 202 : TyrValLeuHisAsnCysAlaIlePheLysIle : 212 :::::!!!!||| !||||||! !|||!!.||| PheMetPheHisValCysAlaLysPheAsnIle 32709 : ttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr306 141 212 . KQ415081.1 32530 32743 + 153 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32531 32743 153 + . gene_id 1 ; sequence CbirOr306 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32531 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32531 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32531 32743 153 + . alignment_id 1 ; Query CbirOr306 ; Align 32531 142 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr306 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 137 -> 254 Target range: 4004 -> 4450 138 : ValLeuCysSerValProSerLeuLeuAspIleIleIleProLeuAsnGluSerArgProSe : 158 :!!||| !||| ! !! !|||! !.!.! !:!!:!!||||||!.!!!: !!.! !!!: LeuLeuThrSerSerIleLeuLeuSerGlnThrLeuValProLeuThrAspValAsnAlaAs 4005 : TTACTGACCTCTTCTATCTTACTCTCGCAAACTCTTGTACCTCTAACCGATGTCAATGCTAA : 4065 159 : rTrpLeuProIleValAlaGluTyrPheValAspGlnGlnArgTyrPheTyrAlaIleLeuI : 179 ! |||! !:!! !|||||||||||||||||| ! :!! !||||||||| !||| !! nAspLeuLeuValArgAlaGluTyrPheValAspTyrGluAspTyrPheTyrLeuIleThrT 4066 : TGACTTACTCGTTCGAGCCGAATATTTTGTCGATTACGAAGATTACTTTTATCTAATCACGA : 4128 180 : leHisIlePheIleValValTyrAlaGlySerMetAlaIleAlaSerValAlaGlyMetMet : 199 !|||! !!:!!! ! !! ..!!.!! ! ! ! !||| !! ! !:!!! hrHisThrValValGluAsnLeuCysAlaPheGlyMetGlnIleSerSerAspIleLeuAsn 4129 : CCCACACGGTTGTAGAAAATTTGTGTGCTTTTGGTATGCAAATTAGTAGCGATATTTTGAAT : 4188 200 : LeuGlyTyrValLeuHisAsnCysAlaIlePheLysIleAla{Se} >>>> Target In : 214 ! ! !:!!:!!|||! ! !!!.!!!:|||:!!:!!.!!{.!} 95 b ThrIleIleMetMetHisIleSerGlyMetPheGluValThr{Gl}++ 4189 : ACCATAATTATGATGCACATCAGTGGAATGTTCGAGGTAACT{GG}gt.............. : 4237 215 : tron 1 >>>> {r}TyrArgIleGluHisIlePheAspGluLysIleLeuGlnMetSerL : 230 p {!} ! !:!!||||||:!:||||||:!! ! ! ! .!!. ++{y}IleValValGluHisLeuPheAspLysCysLysSerAlaAspGlyA 4238 : ...........ag{G}ATTGTTGTCGAGCATCTGTTCGACAAATGCAAAAGTGCTGACGGGa : 4376 231 : ysThrIleGlyGlnTyrValLeuTyrGluArgLeuIleHisAlaValHisLeuHisArgArg : 250 .. ... ::: |||:!!||||||:!:!.! !|||:!!:!!||||||||| snIleAspGluAsnLeuIleTyrTyrLysArgLeuLeuArgIleValAsnMetHisArgArg 4377 : atatcgacgaaaatttgatttactACAAACGTCTGCTGCGTATTGTGAATATGCATCGAAGA : 4436 251 : AlaValAspLeu : 254 !:!! ! ||| AsnLeuLysLeu 4437 : AATCTAAAGTTA : 4450 vulgar: CbirOr306 137 254 . KQ415081.1 4004 4450 + 111 M 76 228 S 0 2 5 0 2 I 0 91 3 0 2 S 1 1 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 4005 4450 111 + . gene_id 2 ; sequence CbirOr306 ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 4005 4234 . + . KQ415081.1 exonerate:protein2genome:local exon 4005 4234 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 4235 4236 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 4235 4329 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 4328 4329 . + . intron_id 0 ; splice_site "AG" KQ415081.1 exonerate:protein2genome:local cds 4330 4450 . + . KQ415081.1 exonerate:protein2genome:local exon 4330 4450 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 4005 4450 111 + . alignment_id 2 ; Query CbirOr306 ; Align 4005 138 228 ; Align 4331 215 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr312 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 131 -> 213 Target range: 32497 -> 32743 132 : LeuGlyThrLeuThrCysPhePheLeuProPheAlaProSerIleLeuAspIlePheMet : 151 :!!|||! !!!!:!!! ! .!.:!!! !||| !|||! !|||:!!|||:!:.!. ! IleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAla 32498 : ATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCG : 32555 152 : ProLeuAsnValSerArgProArgGlnLeuLeuPheProGlyGluTyrPheValAspGln : 171 |||||||||! !||||||! !!.! !|||! !!:! !!||||||||||||||||||||| ProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGln 32556 : CCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcag : 32615 172 : GluLysTyrPheTyrAlaIleTrpLeuHisLeuAspIleThrLeuSerLeuValValThr : 191 :::||||||||| !||| !||||||:!! ! |||:!!!!!|||! !:!!||| GlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThr 32616 : caaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACG : 32675 192 : ThrLeuIleGlyThrGluSerLeuTyrIleIleTyrIleGlnHisValCysGlyMetPhe : 211 ..! !! !.!...:::|||::::::|||...:::::: |||||||||!.!! ||| ValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPhe 32676 : GTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTC : 32735 212 : GlnVal : 213 .!.:!! AsnIle 32736 : AATATT : 32743 vulgar: CbirOr312 131 213 . KQ415081.1 32497 32743 + 172 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32498 32743 172 + . gene_id 1 ; sequence CbirOr312 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32498 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32498 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32498 32743 172 + . alignment_id 1 ; Query CbirOr312 ; Align 32498 132 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr312 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 334 -> 393 Target range: 26746 -> 27635 335 : TyrIleThrArgTrpHisSerAlaProValArgAlaGlnLysLeuLeuProPheIleMet : 354 ||| ! !!!!|||:!!:!!||||||..!||||||||||||||||||! !.!.:!::!! TyrTyrGlySerTrpTyrAlaAlaProThrArgAlaGlnLysLeuLeuLeuLeuValLeu 26747 : TATTACGGAAGCTGGTACGCGGCGCCAACGCGGGCACAAAAATTGCTGCTGCTGGTGTTG : 26804 355 : GlnArgSerMetLysSerCysLysMetAspMetGlyGlyIlePheValSerSerPheGlu : 374 |||!:!!!!||| ! !!|||!..:!:... !.! !||| !!..!:!!|||.!.:!! GlnLysCysMetValProCysSerLeuSerAlaAlaLysIleValThrAlaSerLeuGln 26805 : CAGAAATGCATGGTGCCTTGTAGTTTATCGGCCGCTAAAATTGTCACCGCATCGCTGCAA : 26864 375 : GlyPheAlaSer >>>> Target Intron 1 >>>> LeuMetSerThrThrLeuS : 385 !!:!|||!!! 712 bp :!!:!:..!|||:!!:!!| IleTyrAlaThr++ ++IleValGlnThrSerValS 26865 : ATCTATGCTACGgt.........................agATCGTCCAGACGTCGGTAT : 27609 386 : erTyrPheThrValLeuTrpSerVal : 393 ||||||||:!!||||||!:::!!:!! erTyrPheSerValLeuTyrAlaLeu 27610 : CTTACTTCTCTGTGCTGTACGCGCTG : 27635 vulgar: CbirOr312 334 393 . KQ415081.1 26746 27635 + 111 M 44 132 5 0 2 I 0 708 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 26747 27635 111 + . gene_id 2 ; sequence CbirOr312 ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 26747 26878 . + . KQ415081.1 exonerate:protein2genome:local exon 26747 26878 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 26879 26880 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 26879 27590 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 27589 27590 . + . intron_id 0 ; splice_site "aG" KQ415081.1 exonerate:protein2genome:local cds 27591 27635 . + . KQ415081.1 exonerate:protein2genome:local exon 27591 27635 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 26747 27635 111 + . alignment_id 2 ; Query CbirOr312 ; Align 26747 335 132 ; Align 27591 379 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr302PN Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 89 -> 153 Target range: 11304 -> 11496 90 : AspIleIleLeuProLeuAsnLysThrArgProArgGluIleHisAlaLeuLeuGluTyr : 109 :!!! ||| ! !!! !|||:!!|||||| !!!.!! :!: !.!||| !|||||| AsnThrIleThrSerArgAsnGluThrArgAlaAsnGlyLeuIleValLeuThrGluTyr 11305 : AATACGATCACATCTCGAAACGAGACCAGAGCTAATGGCTTGATAGTTTTAACCGAATAC : 11362 110 : PheIleAspLysAspAlaTyrPhePheProIleLeuCysHisTrpLeuIleGlyLeuIle : 129 |||:!!||| ! !!: !|||.!!!:!|||||| ! !||| !:!!:!!|||:!!.!! PheValAspTyrGluGlnTyrIleTyrProIleThrThrHisValValValGlyIlePhe 11363 : TTCGTTGATTACGAGCAATACATTTATCCAATTACGACCCACGTGGTTGTAGGAATTTTT : 11422 130 : IleGlyCysTyrThrIleIleCysValSerThrSerLeuMetIleCysValGlnHisIle : 149 !!:|||! ! !! ! !||| !! !..! !! ! !||||||! !:!!..!|||:!! MetGlyPheAlaIleGlnIleGlySerAspLeuLeuAsnMetIlePheMetMetHisVal 11423 : ATGGGTTTTGCTATTCAAATTGGCAGCGATCTTTTGAATATGATATTTATGATGCACGTC : 11482 150 : SerGlyLeuPhe : 153 ||||||:!!||| SerGlyMetPhe 11483 : AGTGGAATGTTC : 11496 vulgar: CbirOr302PN 89 153 . KQ415081.1 11304 11496 + 107 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 11305 11496 107 + . gene_id 1 ; sequence CbirOr302PN ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 11305 11496 . + . KQ415081.1 exonerate:protein2genome:local exon 11305 11496 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 11305 11496 107 + . alignment_id 1 ; Query CbirOr302PN ; Align 11305 90 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr303INT Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 113 -> 190 Target range: 32512 -> 32743 114 : TyrAlaIlePheGluAlaMetProIleIleLeuAspMetIlePheProLeuAsnGluThr : 133 ||||||||| ! :!! !:!!||| !|||:!!|||:!!||| ||||||||||||:!! TyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSer 32513 : TACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCC : 32570 134 : ArgProArgGluIleHisAlaLeuThrGluTyrPheIleAspGluArgThrTyrPheCys : 153 |||! !!.!! !:!:! ! ! !|||||||||:!!|||:::::: |||||| ArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeu 32571 : CGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttccta : 32630 154 : ProIleLeuCysHisTrpLeuIleGlyLeuMetLeuGlyAlaTyrValValAlaValThr : 173 |||||| !! ||| !||| !:!!! |||||| ! |||!.!.!!!.!... ProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaVal 32631 : ccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtc : 32690 174 : CysThrLeuHisLeuValTyrMetGluHisIleCysGlyLeuLeuLysVal : 190 :::::: ::: :::||| |||:!!|||!.! !!!!!!.:!! AspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32691 : gattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr303INT 113 190 . KQ415081.1 32512 32743 + 148 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32513 32743 148 + . gene_id 1 ; sequence CbirOr303INT ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32513 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32513 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32513 32743 148 + . alignment_id 1 ; Query CbirOr303INT ; Align 32513 114 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr303INT Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 130 -> 187 Target range: 11322 -> 11493 131 : AsnGluThrArgProArgGluIleHisAlaLeuThrGluTyrPheIleAspGluArgThr : 150 |||||||||||| !!!.!! :!: !.!|||||||||||||||:!!||| ! ..! ! AsnGluThrArgAlaAsnGlyLeuIleValLeuThrGluTyrPheValAspTyrGluGln 11323 : AACGAGACCAGAGCTAATGGCTTGATAGTTTTAACCGAATACTTCGTTGATTACGAGCAA : 11380 151 : TyrPheCysProIleLeuCysHisTrpLeuIleGlyLeuMetLeuGlyAlaTyrValVal : 170 |||.!!! !|||||| ! !||| !:!!:!!|||:!!.!.:!!||| ! !:!! ! TyrIleTyrProIleThrThrHisValValValGlyIlePheMetGlyPheAlaIleGln 11381 : TACATTTATCCAATTACGACCCACGTGGTTGTAGGAATTTTTATGGGTTTTGCTATTCAA : 11440 171 : AlaValThrCysThrLeuHisLeuValTyrMetGluHisIleCysGlyLeu : 187 !! !!:! ! !|||:!!:!!:!!!:!||| !|||:!! !!|||:!! IleGlySerAspLeuLeuAsnMetIlePheMetMetHisValSerGlyMet 11441 : ATTGGCAGCGATCTTTTGAATATGATATTTATGATGCACGTCAGTGGAATG : 11493 vulgar: CbirOr303INT 130 187 . KQ415081.1 11322 11493 + 113 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 11323 11493 113 + . gene_id 2 ; sequence CbirOr303INT ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 11323 11493 . + . KQ415081.1 exonerate:protein2genome:local exon 11323 11493 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 11323 11493 113 + . alignment_id 2 ; Query CbirOr303INT ; Align 11323 131 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr311PI Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 100 -> 175 Target range: 32518 -> 32743 101 : IleLeuSerSerIleSerPheIleLeuAspAlaIleIleProLeuAsnGluSerArgPro : 120 |||:!!..!! !:!: !!!:!|||:!!|||!.!||| ||||||||||||||||||! ! IleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHis 32519 : ATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACAC : 32576 121 : LeuTrpLeuProIleIleValGluTyrPheValAspGlnGluArgTyrPhePheAlaIle : 140 ! ! |||||| ! !! !||||||||||||||||||::::::||||||... !||| HisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIle 32577 : CATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATC : 32636 141 : LeuIleHisThrPheMetPheValTyrValGlyCysIleThrIleAlaAlaIleAlaThr : 160 !:!:|||! !.!! ! !||| !:!!||| ! ..! !.!!|||::: ::: AlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSer 32637 : GCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattca : 32696 161 : MetLeuIleAlaTyrValLeuHisAsnCysAlaIlePheGluVal : 175 :::...||| :::::!!!!||| !||||||! !|||.!.:!! IlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32697 : attttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr311PI 100 175 . KQ415081.1 32518 32743 + 150 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32519 32743 150 + . gene_id 1 ; sequence CbirOr311PI ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32519 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32519 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32519 32743 150 + . alignment_id 1 ; Query CbirOr311PI ; Align 32519 101 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr311PI Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 96 -> 213 Target range: 11265 -> 12284 97 : MetGlyIleIleIleLeuSerSerIleSerPheIleLeuAspAlaIleIleProLeuAsn : 116 .!...!|||:!!.!!||| !!!!:!!||| ! ! !:!!.!!|||! ! !!! !||| PheSerIleValPheLeuHisThrLeuSerGlnThrThrAsnThrIleThrSerArgAsn 11266 : TTCTCTATCGTCTTCTTGCATACGCTTTCGCAAACTACCAATACGATCACATCTCGAAAC : 11323 117 : GluSerArgProLeuTrpLeuProIleIleValGluTyrPheValAspGlnGluArgTyr : 136 |||!!!||| !! ! ! ||| !:!!:!!..!||||||||||||||| ! |||!:!||| GluThrArgAlaAsnGlyLeuIleValLeuThrGluTyrPheValAspTyrGluGlnTyr 11324 : GAGACCAGAGCTAATGGCTTGATAGTTTTAACCGAATACTTCGTTGATTACGAGCAATAC : 11383 137 : PhePheAlaIleLeuIleHisThrPheMetPheValTyrValGlyCysIleThrIleAla : 156 .!!!:! !!||| !! !|||..! !!:!: :!!!:!:!!|||! ! !! ! ! ! IleTyrProIleThrThrHisValValValGlyIlePheMetGlyPheAlaIleGlnIle 11384 : ATTTATCCAATTACGACCCACGTGGTTGTAGGAATTTTTATGGGTTTTGCTATTCAAATT : 11443 157 : AlaIleAlaThrMetLeuIleAlaTyrValLeuHisAsnCysAlaIlePheGluValAla : 176 !.!! !! ! !:!! !!!: !!:!:!!:!!||| ! !!!.!!!:|||!!:!.! ! GlySerAspLeuLeuAsnMetIlePheMetMetHisValSerGlyMetPheAspAlaIle 11444 : GGCAGCGATCTTTTGAATATGATATTTATGATGCACGTCAGTGGAATGTTCGACGCAATC : 11503 177 : {Se} >>>> Target Intron 1 >>>> {r}TyrArgIleGluHisIlePheAsp : 185 {.!} 668 bp {!} ! ! !||||||:!:|||||| {Gl}++ ++{y}IleValAlaGluHisLeuPheAsp 11504 : {GG}gt.........................ag{A}ATTGTCGCAGAGCATCTGTTTGAC : 12198 186 : LysThrIleLeuGlnMetSerLysAspIleArgGlnHisIleLeuTyrGluArgLeuIle : 205 ||| ! ! !... .!!||| ! ...... |||...::!! !||||||:!! LysTyrGluSerSerAspGlyLysIleAspGluAsnLeuIlePheHisAlaArgLeuLeu 12199 : AAGTACGAAAGTTCTGACGGGAAGATCgacgaaaatttgattttccaCGCGAGACTGCTT : 12258 206 : HisAlaValTyrLeuHisArgArg : 213 !.! !||| !!:::|||:::||| ArgLeuValAsnMetHisLysArg 12259 : CGTCTTGTGAATAtgcataaaaga : 12284 vulgar: CbirOr311PI 96 213 . KQ415081.1 11265 12284 + 131 M 80 240 S 0 2 5 0 2 I 0 664 3 0 2 S 1 1 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 11266 12284 131 + . gene_id 2 ; sequence CbirOr311PI ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 11266 11507 . + . KQ415081.1 exonerate:protein2genome:local exon 11266 11507 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 11508 11509 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 11508 12175 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 12174 12175 . + . intron_id 0 ; splice_site "AG" KQ415081.1 exonerate:protein2genome:local cds 12176 12284 . + . KQ415081.1 exonerate:protein2genome:local exon 12176 12284 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 11266 12284 131 + . alignment_id 2 ; Query CbirOr311PI ; Align 11266 97 240 ; Align 12177 178 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr311PI Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 78 -> 217 Target range: 3938 -> 4450 79 : TyrAsnAlaGlyLeuLeuLeuThrAspAsnValPheIleGlyIleValIleGlyMetGlyIl : 99 |||::! !.!! ! !!!!!.! !!!.:!!||| ! ! !:!!||| !:!! ! TyrSerArgSerLysThrPheAsnProLysIlePheGlyPheSerIleIleProValPheSe 3939 : tATTCTAGGAGCAAGACATTTAACCCTAAGATCTTCGGTTTTTCCATTATTCCAGTGTTCTC : 3999 100 : eIleIleLeuSerSerIleSerPheIleLeuAspAlaIleIleProLeuAsnGluSerArgP : 120 ! !:!!|||!!!||| !! !!!.:!!! !.!..!!:!!:!!||||||!.!!!: !!.! rTyrLeuLeuThrSerSerIleLeuLeuSerGlnThrLeuValProLeuThrAspValAsnA 4000 : ATATTTACTGACCTCTTCTATCTTACTCTCGCAAACTCTTGTACCTCTAACCGATGTCAATG : 4062 121 : roLeuTrpLeuProIleIleValGluTyrPheValAspGlnGluArgTyrPhePheAlaIle : 140 !! ! |||! !:!! !!.!||||||||||||||| ! ||| !||||||!:! !||| laAsnAspLeuLeuValArgAlaGluTyrPheValAspTyrGluAspTyrPheTyrLeuIle 4063 : CTAATGACTTACTCGTTCGAGCCGAATATTTTGTCGATTACGAAGATTACTTTTATCTAATC : 4122 141 : LeuIleHisThrPheMetPheValTyrValGlyCysIleThrIleAlaAlaIleAlaThrMe : 161 !! !|||||| !!:!: !! !!.!! ! !! ! ! !::!! !! !! !:! ThrThrHisThrValValGluAsnLeuCysAlaPheGlyMetGlnIleSerSerAspIleLe 4123 : ACGACCCACACGGTTGTAGAAAATTTGTGTGCTTTTGGTATGCAAATTAGTAGCGATATTTT : 4185 162 : tLeuIleAlaTyrValLeuHisAsnCysAlaIlePheGluValAla{Se} >>>> Targe : 177 ! !! ! ! !:!!:!!|||! ! !!!.!!!:|||||||||.!!{.!} uAsnThrIleIleMetMetHisIleSerGlyMetPheGluValThr{Gl}++ 4186 : GAATACCATAATTATGATGCACATCAGTGGAATGTTCGAGGTAACT{GG}gt.......... : 4237 178 : t Intron 1 >>>> {r}TyrArgIleGluHisIlePheAspLysThrIleLeuGlnMet : 191 95 bp {!} ! !:!!||||||:!:||||||||| !! ! ! ++{y}IleValValGluHisLeuPheAspLysCysLysSerAlaAsp 4238 : ...............ag{G}ATTGTTGTCGAGCATCTGTTCGACAAATGCAAAAGTGCTGAC : 4370 192 : SerLysAspIleArgGlnHisIleLeuTyrGluArgLeuIleHisAlaValTyrLeuHisAr : 212 .!!... ...... ||| |||:!!||||||:!:!.! !||| !!:!!||||| GlyAsnIleAspGluAsnLeuIleTyrTyrLysArgLeuLeuArgIleValAsnMetHisAr 4371 : GGGaatatcgacgaaaatttgatttactACAAACGTCTGCTGCGTATTGTGAATATGCATCG : 4433 213 : gArgAlaValAspLeu : 217 |||| !:!! ! ||| gArgAsnLeuLysLeu 4434 : AAGAAATCTAAAGTTA : 4450 vulgar: CbirOr311PI 78 217 . KQ415081.1 3938 4450 + 120 M 98 294 S 0 2 5 0 2 I 0 91 3 0 2 S 1 1 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 3939 4450 120 + . gene_id 3 ; sequence CbirOr311PI ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 3939 4234 . + . KQ415081.1 exonerate:protein2genome:local exon 3939 4234 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 4235 4236 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 4235 4329 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 4328 4329 . + . intron_id 0 ; splice_site "AG" KQ415081.1 exonerate:protein2genome:local cds 4330 4450 . + . KQ415081.1 exonerate:protein2genome:local exon 4330 4450 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 3939 4450 120 + . alignment_id 3 ; Query CbirOr311PI ; Align 3939 79 294 ; Align 4331 178 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr308 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 138 -> 214 Target range: 32518 -> 32746 139 : IleLeuSerSerIleProPheIleLeuAsnAlaIleIleProLeuAsnGluSerArgPro : 158 |||:!!..!! !:!:|||!:!|||:!!:!!!.!||| ||||||||||||||||||! ! IleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHis 32519 : ATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACAC : 32576 159 : LeuTrpLeuProIleIleValGluTyrPheValAspGlnGluArgTyrPhePheAlaIle : 178 ! ! |||||| ! !! !||||||||||||||||||::::::||||||... !||| HisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIle 32577 : CATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATC : 32636 179 : LeuThrHisIlePheMetThrThrPheAlaGlyCysIleThrLeuAlaGlyIleAlaThr : 198 ! !|||!!:.!! !|||..! ! !||| ! ..! !.!!!.!::: ::: AlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSer 32637 : GCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattca : 32696 199 : MetHisIleAlaTyrAlaLeuHisAsnCysAlaIlePheGluIleVal : 214 ::: ||| ::: !!!!||| !||||||! !|||.!.|||:!! IlePheIlePhePheMetPheHisValCysAlaLysPheAsnIleLeu 32697 : attttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATTCTC : 32746 vulgar: CbirOr308 138 214 . KQ415081.1 32518 32746 + 148 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32519 32746 148 + . gene_id 1 ; sequence CbirOr308 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32519 32746 . + . KQ415081.1 exonerate:protein2genome:local exon 32519 32746 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32519 32746 148 + . alignment_id 1 ; Query CbirOr308 ; Align 32519 139 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr308 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 120 -> 214 Target range: 11223 -> 11505 121 : PheHisThrIleAlaPheMetLeuLeuGlyThrPheMetCysAlaGlyLeuPheIleLeu : 140 ||| !! !:!!.!!.!! :!!! !..! !!!.:!:! !..!:!! !!.!!||| PheAspPheValThrIleProValSerSerCysLeuLeuLeuPheSerIleValPheLeu 11224 : TTCGATTTTGTCACGATTCCAGTGTCCTCATGTTTGCTATTGTTCTCTATCGTCTTCTTG : 11281 141 : SerSerIleProPheIleLeuAsnAlaIleIleProLeuAsnGluSerArgProLeuTrp : 160 !!!!:!! !! ! ! !|||.!!|||! ! !!! !||||||!!!||| !! ! ! HisThrLeuSerGlnThrThrAsnThrIleThrSerArgAsnGluThrArgAlaAsnGly 11282 : CATACGCTTTCGCAAACTACCAATACGATCACATCTCGAAACGAGACCAGAGCTAATGGC : 11341 161 : LeuProIleIleValGluTyrPheValAspGlnGluArgTyrPhePheAlaIleLeuThr : 180 ||| !:!!:!!..!||||||||||||||| ! |||!:!|||.!!!:! !!||| !||| LeuIleValLeuThrGluTyrPheValAspTyrGluGlnTyrIleTyrProIleThrThr 11342 : TTGATAGTTTTAACCGAATACTTCGTTGATTACGAGCAATACATTTATCCAATTACGACC : 11401 181 : HisIlePheMetThrThrPheAlaGlyCysIleThrLeuAlaGlyIleAlaThrMetHis : 200 |||:!: !!:!: !! !||| !|||! ! !! !! ! !|||! !! ! !:!!:!! HisValValValGlyIlePheMetGlyPheAlaIleGlnIleGlySerAspLeuLeuAsn 11402 : CACGTGGTTGTAGGAATTTTTATGGGTTTTGCTATTCAAATTGGCAGCGATCTTTTGAAT : 11461 201 : IleAlaTyrAlaLeuHisAsnCysAlaIlePheGluIleVal : 214 !!: !!:! !:!!||| ! !!!.!!!:|||!!: !:!! MetIlePheMetMetHisValSerGlyMetPheAspAlaIle 11462 : ATGATATTTATGATGCACGTCAGTGGAATGTTCGACGCAATC : 11505 vulgar: CbirOr308 120 214 . KQ415081.1 11223 11505 + 110 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 11224 11505 110 + . gene_id 2 ; sequence CbirOr308 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 11224 11505 . + . KQ415081.1 exonerate:protein2genome:local exon 11224 11505 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 11224 11505 110 + . alignment_id 2 ; Query CbirOr308 ; Align 11224 121 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr307 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 119 -> 214 Target range: 32461 -> 32746 120 : ArgPheTyrThrIleIlePheMetLeuIleAlaThrSerValValLeuGlyValIleSer : 139 ||||||::: :::||| !! !.!!!.! !! !! !:!!!!!..! ! !! ! ArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIle 32462 : cgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATA : 32519 140 : LeuAlaPheAlaSerThrIleLeuAspIleIleIleProLeuAsnGluSerArgProLeu : 159 :!! !||| ! !! !|||:!!|||:!:||| ||||||||||||||||||! !! ! ValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHis 32520 : GTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCAT : 32579 160 : ArgLeuProIleGluValGluTyrPheValAspGlnGlnArgTyrPheTyrAlaIleSer : 179 !|||||| !! ! !|||||||||||||||||||||:::|||||| !|||:!! ValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAla 32580 : GTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCG : 32639 180 : LeuHisMetGlyMetThrPheTyrAlaGlyMetMetIleMetThrAlaIleThrThrIle : 199 ||||||||| ! !||| !! ! !|||:!!! !:!! ||||||::: :::||| LeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIle 32640 : TTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaatt : 32699 200 : PheIleAlaTyrValSerHisAsnCysAlaIlePheGluIleVal : 214 |||||| :::::!! !||| !||||||! !|||.!.|||:!! PheIlePhePheMetPheHisValCysAlaLysPheAsnIleLeu 32700 : ttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATTCTC : 32746 vulgar: CbirOr307 119 214 . KQ415081.1 32461 32746 + 180 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32462 32746 180 + . gene_id 1 ; sequence CbirOr307 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32462 32746 . + . KQ415081.1 exonerate:protein2genome:local exon 32462 32746 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32462 32746 180 + . alignment_id 1 ; Query CbirOr307 ; Align 32462 120 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr295PC(F) Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 117 -> 214 Target range: 32452 -> 32743 118 : SerSerValArgLeuIleSerMetIleAlaIleValPheCysHisPheAspThrLeuCys : 137 !!!!!::::|||...... :::|||.!!! !! !||| :!!.!!! ! !!!!! ! ThrThrLeuArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSer 32453 : ACTACtctccgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCC : 32510 138 : TyrValThrValGluLeuLeuProLeuIleLeuAspValIleSerProLeuAsnLysSer : 157 |||!.!! !|||:!!!!!||||||! !|||:!!|||||||||:!!|||||||||:!!||| TyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSer 32511 : TACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCC : 32570 158 : ArgSerLeuLysLeuIleAlaAsnThrGluTyrPheValAsnArgGluLysTyrIleTrp : 177 ||| !! ! !||| ! ! !||||||||||||:!!::::::||||||... ArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeu 32571 : CGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttccta : 32630 178 : ValMetLeuLeuHisGluIleThrAlaIleTyrIleArgValIleThrValCysCysThr : 197 !!!: !|||||| !:!! !.!!:!! !:!! !!:!!! ..!!.! ..!... ProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaVal 32631 : ccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtc : 32690 198 : SerValThrIleMetMetTyrIleLeuHisAlaCysAlaLeuPheLysVal : 214 ... ...:::...::::::!!!|||!.!|||||| !|||!!.:!! AspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32691 : gattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr295PC(F) 117 214 . KQ415081.1 32452 32743 + 145 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32453 32743 145 + . gene_id 1 ; sequence CbirOr295PC(F) ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32453 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32453 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32453 32743 145 + . alignment_id 1 ; Query CbirOr295PC(F) ; Align 32453 118 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr295PC(F) Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 137 -> 214 Target range: 22065 -> 22296 138 : TyrValThrValGluLeuLeuProLeuIleLeuAspValIleSerProLeuAsnLysSer : 157 !:!||||||!.! !|||||||||:!!:!!:!! ! !|||..!|||! !|||:!!||| PheValThrAlaThrLeuLeuProIleValMetCysArgIleGlnProArgAsnGluSer 22066 : TTCGTTACAGCGACGCTTCTACCAATCGTAATGTGTAGAATACAGCCACGTAACGAATCT : 22123 158 : ArgSerLeuLysLeuIleAlaAsnThrGluTyrPheValAsnArgGluLysTyrIleTrp : 177 !.! !! !! :!! !.!. ||||||||| :::::!|||||| !!!!: ! HisValHisThrIleProPheGlnGlyGluTyrPhePheAspGlnGluLysAsnMetVal 22124 : CACGTACACACTATTCCGTTTCAaggggaatattttttcgaccAAGAGAAAAATATGGTG : 22183 178 : ValMetLeuLeuHisGluIleThrAlaIleTyrIleArgValIleThrValCysCysThr : 197 !!!!::!!|||||| !||| !.!!:!! |||! ! ! !! !!.! ||| PheIleIleLeuHisMetIleLeuThrValThrIleThrHisCysIleAlaValMetThr 22184 : TTCATTATACTGCACATGATACTCACAGTTACAATCACACATTGCATTGCTGTAATGACT : 22243 198 : SerValThrIleMetMetTyrIleLeuHisAlaCysAlaLeuPheLysVal : 214 ..!:!!! !:!::!::!:! ! !:!!|||||||||||||||||| ||| AspMetIleLeuLeuValLeuThrMetHisAlaCysAlaLeuPheAlaVal 22244 : GATATGATTTTGCTAGTTTTAACCATGCATGCCTGTGCCTTGTTCGCTGTT : 22296 vulgar: CbirOr295PC(F) 137 214 . KQ415081.1 22065 22296 + 121 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 22066 22296 121 + . gene_id 2 ; sequence CbirOr295PC(F) ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 22066 22296 . + . KQ415081.1 exonerate:protein2genome:local exon 22066 22296 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 22066 22296 121 + . alignment_id 2 ; Query CbirOr295PC(F) ; Align 22066 138 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr289 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 120 -> 214 Target range: 32461 -> 32743 121 : ArgLeuLeuThrIleIleAlaPheAlaPheSerTyrCysCysLeuLeuCysAlaGlyIle : 140 |||...... :::|||.!! !.!||| !||| ! ! :!!!!!! ! !!.!||| ArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIle 32462 : cgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATA : 32519 141 : LeuGlnPheLeuProValIleLeuAspLeuIleLeuProLeuAsnGluSerArgProLeu : 160 :!!|||||||||||| !|||:!!|||:!!||| !||||||||||||||||||! !! ! ValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHis 32520 : GTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCAT : 32579 161 : HisLeuIleValPheAlaGluTyrPheIleAsnGlnGluGluTyrLeuTyrAlaMetLeu : 180 ||| ! !!.!|||||||||:!!:!!|||::::::|||... !!!: ! ValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAla 32580 : GTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCG : 32639 181 : LeuHisGluIlePheAlaValHisLeuAlaAlaIleAlaLeuCysCysThrSerThrThr : 200 |||||| !:!! .!!||| !|||!.! !! !.! ! ..!......::: LeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIle 32640 : TTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaatt : 32699 201 : IleMetSerTyrIleLeuHisGlyCysAlaLeuLeuLysVal : 214 ...::: ::::::!!!|||! !|||||| !!!!!!.:!! PheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32700 : ttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr289 120 214 . KQ415081.1 32461 32743 + 144 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32462 32743 144 + . gene_id 1 ; sequence CbirOr289 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32462 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32462 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32462 32743 144 + . alignment_id 1 ; Query CbirOr289 ; Align 32462 121 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr299PN(F) Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 70 -> 165 Target range: 32461 -> 32743 71 : ArgLeuPheGlyValPheIleThrValGlyMetPheIleThrLeuAlaValPheGlyPhe : 90 |||...||| :::.!!! !|||! ! !:!:!:!||| !:!! ! !!:!!.!.!. ArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIle 32462 : cgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATA : 32519 91 : TyrGlnPheLeuProAspLeuLeuAspMetIleAlaProLeuAsnAspSerArgLysHis : 110 |||||||||||| !!:!!:!!|||:!!|||||||||||||||!!:|||||| ! ||| ValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHis 32520 : GTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCAT : 32579 111 : PheLeuThrPheAspAlaGluTyrPheValAspGlnLysGluTyrPheTyrProIleVal : 130 ! ||| !!!:!! !!.!||||||||||||||||||::::::|||||| ||||||!.! ValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAla 32580 : GTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCG : 32639 131 : ThrHisGlyLeuThrAlaValTyrIleGlyGlyThrValGlyIleValAlaThrGlyGly : 150 !||| !||| !.!!||| !:!!||| !||||||!.! ..!|||... ... LeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAla---ThrAlaValAspSer 32640 : TTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCC---ACGGCTGtcgattca : 32696 151 : MetLeuMetGlyTyrIleLeuHisIleCysAlaMetLeuLysIle : 165 :::...::: ::::::!!!|||:!!||||||! !!!!!.||| IlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32697 : attttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr299PN(F) 70 165 . KQ415081.1 32461 32743 + 183 M 74 222 G 1 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32462 32743 183 + . gene_id 1 ; sequence CbirOr299PN(F) ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32462 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32462 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32462 32743 183 + . alignment_id 1 ; Query CbirOr299PN(F) ; Align 32462 71 222 ; Align 32684 146 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr294 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 87 -> 213 Target range: 21286 -> 22296 88 : AsnValLysLeuLeuLeuGluArgIleArgAspAspTrpAsnLeuLeuLysGlyLysLeu : 107 .!.:!!|||! !||||||||||||:!:!:! !!||||||:!! !:!!::!|||!:! ! GlnLeuLysGlnLeuLeuGluArgValLysHisAspTrpAspAlaValArgGlyArgGlu 21287 : CAGCTGAAGCAGCTCCTCGAGCGCGTGAAGCACGATTGGGACGCGGTTCGAGGCAGGGAA : 21344 108 : GluIleAspIleIleLysLysTyrAlaSerSerValArgLeuIleSerMetIleAlaIle : 127 |||:!: !|||!!:!:!||||||.!!!.!! ! !|||:!!.!!.!!!!::!: !! ! GluLeuIleIleMetArgLysTyrThrLysTyrTyrArgMetPheGlyIleLeuTyrThr 21345 : GAGCTGATCATTATGAGAAAGTACACCAAGTATTACAGGATGTTTGGTATATTGTACACA : 21404 128 : {I} >>>> Target Intron 1 >>>> {le}ValCysHisPheAspIleLeuCys : 136 { } 632 bp { !} !!! ! ! !! !||| ! ! {T}++ ++{yr}PheTyrSerCysGlyIleGlyLeu 21405 : {T}gt.........................ag{AC}TTCTATTCGTGTGGCATAGGACTT : 22063 137 : TyrIleIleLeuGluHisLeuProLeuLeuLeuAspValIleLeuProLeuAsnLysSer : 156 !:!:!!! ! ! !! !||||||:!!:!!:!! ! !|||! !|||! !|||:!!||| PheValThrAlaThrLeuLeuProIleValMetCysArgIleGlnProArgAsnGluSer 22064 : TTCGTTACAGCGACGCTTCTACCAATCGTAATGTGTAGAATACAGCCACGTAACGAATCT : 22123 157 : ArgThrLeuLysSerIleAlaIleThrGluTyrPheValThrArgGluLysTyrIleTrp : 176 !.!..!! !! ! ! ! ||||||||| ::!|||||| !!!!: ! HisValHisThrIleProPheGlnGlyGluTyrPhePheAspGlnGluLysAsnMetVal 22124 : CACGTACACACTATTCCGTTTCAaggggaatattttttcgaccAAGAGAAAAATATGGTG : 22183 177 : ValThrLeuLeuHisGluIleIleAlaIleTyrIleArgValIleThrLeuCysCysThr : 196 !!! !:!!|||||| !|||:!!.!!:!! |||! ! ! !! ! ! ||| PheIleIleLeuHisMetIleLeuThrValThrIleThrHisCysIleAlaValMetThr 22184 : TTCATTATACTGCACATGATACTCACAGTTACAATCACACATTGCATTGCTGTAATGACT : 22243 197 : GlyIleThrMetMetMetTyrIleLeuHisAlaCysAlaLeuPheLysIle : 213 ! !!!:! !:!!:!::!:! ! !:!!|||||||||||||||||| :!! AspMetIleLeuLeuValLeuThrMetHisAlaCysAlaLeuPheAlaVal 22244 : GATATGATTTTGCTAGTTTTAACCATGCATGCCTGTGCCTTGTTCGCTGTT : 22296 vulgar: CbirOr294 87 213 . KQ415081.1 21286 22296 + 159 M 40 120 S 0 1 5 0 2 I 0 628 3 0 2 S 1 2 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 21287 22296 159 + . gene_id 1 ; sequence CbirOr294 ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 21287 21407 . + . KQ415081.1 exonerate:protein2genome:local exon 21287 21407 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 21408 21409 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 21408 22039 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 22038 22039 . + . intron_id 0 ; splice_site "AG" KQ415081.1 exonerate:protein2genome:local cds 22040 22296 . + . KQ415081.1 exonerate:protein2genome:local exon 22040 22296 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 21287 22296 159 + . alignment_id 1 ; Query CbirOr294 ; Align 21287 88 120 ; Align 22042 129 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr294 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 116 -> 213 Target range: 32452 -> 32743 117 : SerSerValArgLeuIleSerMetIleAlaIleIleValCysHisPheAspIleLeuCys : 136 !!!!!::::|||...... :::|||.!!! ! ! !! :!!.!!! |||!!!! ! ThrThrLeuArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSer 32453 : ACTACtctccgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCC : 32510 137 : TyrIleIleLeuGluHisLeuProLeuLeuLeuAspValIleLeuProLeuAsnLysSer : 156 ||| !|||:!!:!! !||||||! !:!!:!!||||||||| !|||||||||:!!||| TyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSer 32511 : TACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCC : 32570 157 : ArgThrLeuLysSerIleAlaIleThrGluTyrPheValThrArgGluLysTyrIleTrp : 176 ||| !! ! ! ! ! ! !|||||||||||| !::::::||||||... ArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeu 32571 : CGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttccta : 32630 177 : ValThrLeuLeuHisGluIleIleAlaIleTyrIleArgValIleThrLeuCysCysThr : 196 !! ! !|||||| !:!! .!!:!! !:!! !!:!!! ..! ! ..!... ProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaVal 32631 : ccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtc : 32690 197 : GlyIleThrMetMetMetTyrIleLeuHisAlaCysAlaLeuPheLysIle : 213 ...:::...::::::!!!|||!.!|||||| !|||!!.||| AspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32691 : gattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr294 116 213 . KQ415081.1 32452 32743 + 125 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32453 32743 125 + . gene_id 2 ; sequence CbirOr294 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32453 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32453 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32453 32743 125 + . alignment_id 2 ; Query CbirOr294 ; Align 32453 117 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr290PSE(F) Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 117 -> 213 Target range: 32455 -> 32743 118 : AsnIleArgIleIleThrIleLeuAlaMetGluPheTyrLysPheGlyIleSerCysTyr : 137 !..:::|||...... ::::!!.!!! ! !||| ! .!!||||||! !! !||| ThrLeuArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyr 32456 : ACtctccgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTAC : 32513 138 : LeuThrPheGlnLeuLeuProLeuIleLeuAspValIleValProLeuAsnValSerArg : 157 !! ! ! |||!!!||||||! !|||:!!|||||||||!.!|||||||||! !|||||| AlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArg 32514 : GCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGA : 32573 158 : SerLeuLysLeuIleAlaIleThrGluTyrPheLeuAsnArgGluLysTyrValCysVal : 177 !! ! !||| ! ! !|||||||||:!!:!!::::::|||||| ! HisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuPro 32574 : CACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccA : 32633 178 : MetLeuLeuHisGluMetLeuThrValTyrIleGlyValIleThrAlaCysSerThrGly : 197 !!: !|||||| !:!: !|||||| !:!!|||:!!! ..!||| :!!... IleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAsp 32634 : ATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgat : 32693 198 : LeuIleIleMetThrTyrIleLeuHisAlaCysAlaLeuPheLysIle : 213 |||...::: ::::::!!!|||!.!|||||| !|||!!.||| SerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32694 : tcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr290PSE(F) 117 213 . KQ415081.1 32455 32743 + 160 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32456 32743 160 + . gene_id 1 ; sequence CbirOr290PSE(F) ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32456 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32456 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32456 32743 160 + . alignment_id 1 ; Query CbirOr290PSE(F) ; Align 32456 118 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr290PSE(F) Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 118 -> 213 Target range: 22011 -> 22296 119 : IleArgIleIleThrIleLeuAlaMetGluPheTyrLysPheGlyIleSerCysTyrLeu : 138 ||| ||| ...|||..! !!:||||||..!! !||||||.!! !!:!:!! Ile***IleSerTyrPheLeuValAlaAspPheTyrSerCysGlyIleGlyLeuPheVal 22012 : atttgaatttcgtattttctcgTTGCAGACTTCTATTCGTGTGGCATAGGACTTTTCGTT : 22069 139 : ThrPheGlnLeuLeuProLeuIleLeuAspValIleValProLeuAsnValSerArgSer : 158 ||| !|||||||||:!!:!!:!! ! !||| !|||! !|||! !|||!.! ! ThrAlaThrLeuLeuProIleValMetCysArgIleGlnProArgAsnGluSerHisVal 22070 : ACAGCGACGCTTCTACCAATCGTAATGTGTAGAATACAGCCACGTAACGAATCTCACGTA : 22129 159 : LeuLysLeuIleAlaIleThrGluTyrPheLeuAsnArgGluLysTyrValCysValMet : 178 ! !! :!! ! |||||||||...:::::!|||||| !!:!! !!!!: HisThrIleProPheGlnGlyGluTyrPhePheAspGlnGluLysAsnMetValPheIle 22130 : CACACTATTCCGTTTCAaggggaatattttttcgaccAAGAGAAAAATATGGTGTTCATT : 22189 179 : LeuLeuHisGluMetLeuThrValTyrIleGlyValIleThrAlaCysSerThrGlyLeu : 198 :!!|||||| !!!:||||||||| ||| ! ! !! !||| ! !|||! !:!! IleLeuHisMetIleLeuThrValThrIleThrHisCysIleAlaValMetThrAspMet 22190 : ATACTGCACATGATACTCACAGTTACAATCACACATTGCATTGCTGTAATGACTGATATG : 22249 199 : IleIleMetThrTyrIleLeuHisAlaCysAlaLeuPheLysIle : 213 |||:!::!:..!! ! !:!!|||||||||||||||||| :!! IleLeuLeuValLeuThrMetHisAlaCysAlaLeuPheAlaVal 22250 : ATTTTGCTAGTTTTAACCATGCATGCCTGTGCCTTGTTCGCTGTT : 22296 vulgar: CbirOr290PSE(F) 118 213 . KQ415081.1 22011 22296 + 150 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 22012 22296 150 + . gene_id 2 ; sequence CbirOr290PSE(F) ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 22012 22296 . + . KQ415081.1 exonerate:protein2genome:local exon 22012 22296 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 22012 22296 150 + . alignment_id 2 ; Query CbirOr290PSE(F) ; Align 22012 119 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr293 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 117 -> 213 Target range: 32455 -> 32743 118 : SerIleAsnPheIleThrIleTyrGlyIleValPheCysHisPheGlyIleLeuCysTyr : 137 !!::::...|||... ::: ! !! !! !||| :!!.!!||||||!!!! !||| ThrLeuArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyr 32456 : ACtctccgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTAC : 32513 138 : LeuThrLeuGlnPheLeuProLeuIleLeuAspValIleValProLeuAsnThrSerArg : 157 !! !:!!||||||||||||! !|||:!!|||||||||!.!||||||||| !|||||| AlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArg 32514 : GCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGA : 32573 158 : SerLeuLysLeuMetAlaIleThrGluTyrPheValAsnArgGluLysTyrAlaSerAla : 177 !! ! !||| ! ! ! !||||||||||||:!!::::::|||||| ! HisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuPro 32574 : CACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccA : 32633 178 : MetLeuLeuHisGluIleLeuThrValTyrThrGlyValMetThrLeuCysSerThrGly : 197 !!: !|||||| !:!! !|||||| ! !|||:!!! !..! ! :!!... IleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAsp 32634 : ATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgat : 32693 198 : LeuThrIleMetThrTyrIleLeuHisAlaCysAlaLeuLeuLysIle : 213 ...::: ::::::!!!|||!.!|||||| !!!!!!.||| SerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32694 : tcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr293 117 213 . KQ415081.1 32455 32743 + 155 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32456 32743 155 + . gene_id 1 ; sequence CbirOr293 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32456 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32456 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32456 32743 155 + . alignment_id 1 ; Query CbirOr293 ; Align 32456 118 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr293 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 128 -> 213 Target range: 22041 -> 22296 129 : PheCysHisPheGlyIleLeuCysTyrLeuThrLeuGlnPheLeuProLeuIleLeuAsp : 148 |||! ! ! !|||||| ! !!:!:!!||| ! !.!!||||||:!!:!!:!! ! PheTyrSerCysGlyIleGlyLeuPheValThrAlaThrLeuLeuProIleValMetCys 22042 : TTCTATTCGTGTGGCATAGGACTTTTCGTTACAGCGACGCTTCTACCAATCGTAATGTGT : 22099 149 : ValIleValProLeuAsnThrSerArgSerLeuLysLeuMetAlaIleThrGluTyrPhe : 168 !||| !|||! !||| !|||!.! !! !! :!! ! ! ||||||||| ArgIleGlnProArgAsnGluSerHisValHisThrIleProPheGlnGlyGluTyrPhe 22100 : AGAATACAGCCACGTAACGAATCTCACGTACACACTATTCCGTTTCAaggggaatatttt : 22159 169 : ValAsnArgGluLysTyrAlaSerAlaMetLeuLeuHisGluIleLeuThrValTyrThr : 188 :::::!|||||| !! ! ! !!!::!!|||||| !|||||||||||| ! ! PheAspGlnGluLysAsnMetValPheIleIleLeuHisMetIleLeuThrValThrIle 22160 : ttcgaccAAGAGAAAAATATGGTGTTCATTATACTGCACATGATACTCACAGTTACAATC : 22219 189 : GlyValMetThrLeuCysSerThrGlyLeuThrIleMetThrTyrIleLeuHisAlaCys : 208 ! ! ! ! ! ! !|||! !:!!! !:!::!:..!! ! !:!!||||||||| ThrHisCysIleAlaValMetThrAspMetIleLeuLeuValLeuThrMetHisAlaCys 22220 : ACACATTGCATTGCTGTAATGACTGATATGATTTTGCTAGTTTTAACCATGCATGCCTGT : 22279 209 : AlaLeuLeuLysIle : 213 ||||||!!! :!! AlaLeuPheAlaVal 22280 : GCCTTGTTCGCTGTT : 22296 vulgar: CbirOr293 128 213 . KQ415081.1 22041 22296 + 107 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 22042 22296 107 + . gene_id 2 ; sequence CbirOr293 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 22042 22296 . + . KQ415081.1 exonerate:protein2genome:local exon 22042 22296 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 22042 22296 107 + . alignment_id 2 ; Query CbirOr293 ; Align 22042 129 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr292PI Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 89 -> 174 Target range: 32488 -> 32743 90 : PheCysHisPheGlyThrSerCysTyrLeuIleLeuGlnLeuLeuProLeuIleLeuAsp : 109 ||| :!!.!!|||! !! !! !||| !|||:!!|||!!!||||||! !|||:!!||| PheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAsp 32489 : TTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGAC : 32546 110 : ValIleValProLeuAsnAlaSerArgSerLeuAsnLeuLeuAlaIleThrGluTyrPhe : 129 ||||||!.!|||||||||! !|||||| !! ! |||! ! ! ! !||||||||| ValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPhe 32547 : GTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTC : 32606 130 : ValAsnArgGluLysTyrAlaCysValIleLeuLeuHisGluLeuLeuThrIleTyrVal : 149 |||:!!::::::|||||| !||| !|||||| !||| !|||:!! !:!! ValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeu 32607 : GTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTT : 32666 150 : GlyThrIleThrLeuCysSerThrGlyLeuIlePheMetThrHisLeuLeuHisGlyCys : 169 ||| !! ..! ! :!!... ||||||::: ::!!!!|||! !||| GlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCys 32667 : GGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGC : 32726 170 : AlaLeuLeuLysVal : 174 ||| !!!!!!.:!! AlaLysPheAsnIle 32727 : GCCAAATTCAATATT : 32743 vulgar: CbirOr292PI 89 174 . KQ415081.1 32488 32743 + 151 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32489 32743 151 + . gene_id 1 ; sequence CbirOr292PI ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32489 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32489 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32489 32743 151 + . alignment_id 1 ; Query CbirOr292PI ; Align 32489 90 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr291INT Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 30 -> 115 Target range: 32488 -> 32743 31 : PheCysHisPheGlyIleSerCysTyrLeuThrLeuGlnLeuLeuProLeuIleLeuAsp : 50 ||| :!!.!!||||||! !! !||| !! !:!!|||!!!||||||! !|||:!!||| PheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAsp 32489 : TTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGAC : 32546 51 : ValIleValProLeuAsnAlaThrArgSerLeuLysLeuIleThrIleThrGluTyrPhe : 70 ||||||!.!|||||||||! !:!!||| !! ! !||| ! ! !||||||||| ValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPhe 32547 : GTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTC : 32606 71 : ValAsnArgGluLysTyrAlaCysAlaIleLeuLeuHisGluMetLeuThrValTyrVal : 90 |||:!!::::::|||||| !||| !|||||| !:!: !|||||| !:!! ValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeu 32607 : GTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTT : 32666 91 : GlyAlaIleThrThrCysSerThrGlyLeuIlePheMetAlaTyrIleLeuHisGlyCys : 110 ||| !! ..!.!! :!!... ||||||::: ::::::!!!|||! !||| GlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCys 32667 : GGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGC : 32726 111 : AlaLeuLeuLysIle : 115 ||| !!!!!!.||| AlaLysPheAsnIle 32727 : GCCAAATTCAATATT : 32743 vulgar: CbirOr291INT 30 115 . KQ415081.1 32488 32743 + 154 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32489 32743 154 + . gene_id 1 ; sequence CbirOr291INT ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32489 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32489 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32489 32743 154 + . alignment_id 1 ; Query CbirOr291INT ; Align 32489 31 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr305 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 131 -> 213 Target range: 32500 -> 32746 132 : GlyCysLeuGlyValLeuSerLeuSerPheValSerProIleLeuAspValIleIlePro : 151 ||| !!!..! ! !! !:!!..!|||:!! !! !|||:!!||||||||| ||| GlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaPro 32501 : GGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCT : 32558 152 : MetAsnValSerArgSerLeuArgLeuProIleValAlaGluTyrPheValAspGlnThr : 171 :!:|||! !|||||| !! ! !|||||| !!.!!.!|||||||||||||||||| LeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGln 32559 : CTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaa : 32618 172 : ArgTyrPheTyrProIleMetIleHisIlePheIleValSerTyrValCysLeuMetThr : 191 :::|||||| |||||| !:!:|||!!:.!! ..! ! !:!! !!|||! !..! LysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrVal 32619 : aaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTC : 32678 192 : LeuValAlaIleIleAlaLeuLeuIleAlaTyrValMetHisAsnCysAlaIlePheGlu : 211 !..!|||::: ::::::...||| :::::!.!.||| !||||||! !|||.!. AlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsn 32679 : GCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAAT : 32738 212 : IleVal : 213 |||:!! IleLeu 32739 : ATTCTC : 32746 vulgar: CbirOr305 131 213 . KQ415081.1 32500 32746 + 147 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32501 32746 147 + . gene_id 1 ; sequence CbirOr305 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32501 32746 . + . KQ415081.1 exonerate:protein2genome:local exon 32501 32746 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32501 32746 147 + . alignment_id 1 ; Query CbirOr305 ; Align 32501 132 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr289 Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 133 -> 221 Target range: 217 -> 481 134 : CysLeuLeuCysAlaGlyIleLeuGlnPheLeuProValIleLeuAspLeuIleLeuProLeuA : 155 |||:!!:!! !! ! !! ! ! !||| !|||||||||:!!:!!|||||| !| CysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProLysA 218 : TGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAAA : 281 156 : snGluSerArgProLeuHisLeuIleValPheAlaGluTyrPheIleAsnGlnGluGluTyrLe : 176 ||||||||||| !:!! ! !||| ! ||| ! ||||||! !:!!:!!.!.:!!||| snGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAs 282 : ACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGA : 344 177 : uTyrAlaMetLeuLeuHisGluIlePheAlaValHisLeuAlaAlaIleAlaLeuCysCysThr : 197 ! !!!::!! !||| ! ! !!.!:!!! :!!!.! ! !!.!! !! !..! ! pValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrPheAlaCys 345 : CGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGT : 407 198 : SerThrThrIleMetSerTyrIleLeuHisGlyCysAlaLeuLeuLysValAlaSerTyrArgV : 219 ..!|||!:! !!!:! ! !:!:! !|||||||||!.!|||||| |||:!!.!. :::: AspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly***LysI 408 : GACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaa : 473 220 : alGluAsn : 221 ::...::: leArgSer 474 : ttcgatcg : 481 vulgar: CbirOr289 133 221 . LHQN01023902.1 217 481 + 105 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 218 481 105 + . gene_id 1 ; sequence CbirOr289 ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 218 481 . + . LHQN01023902.1 exonerate:protein2genome:local exon 218 481 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 218 481 105 + . alignment_id 1 ; Query CbirOr289 ; Align 218 134 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr307 Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 129 -> 213 Target range: 208 -> 460 130 : AlaThrSerValValLeuGlyValIleSerLeuAlaPheAlaSerThrIleLeuAspIleIleI : 151 |||! ! ! !|||:!! ! !!:!:||| ! !! ! .!! !! !||||||||||||:!!: AlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuL 209 : GCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTAC : 272 152 : leProLeuAsnGluSerArgProLeuArgLeuProIleGluValGluTyrPheValAspGlnGl : 172 !!||| !|||||||||||| !:!! !! ! ! ! !!.! ! ||||||..!|||:!!!! euProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHi 273 : TACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCA : 335 173 : nArgTyrPheTyrAlaIleSerLeuHisMetGlyMetThrPheTyrAlaGlyMetMetIleMet : 193 .!:!||| ! !|||! ! !||||||!.! ..!.!! !.!! !.!. :!: sLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyr 336 : TAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTAC : 398 194 : ThrAlaIleThrThrIlePheIleAlaTyrValSerHisAsnCysAlaIlePheGluIle : 213 !||| ! !|||! !!:!||| ! !|||..!|||..!|||!.!:!:!!.! :!: PheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaVal 399 : TTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTG : 460 vulgar: CbirOr307 129 213 . LHQN01023902.1 208 460 + 106 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 209 460 106 + . gene_id 1 ; sequence CbirOr307 ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 209 460 . + . LHQN01023902.1 exonerate:protein2genome:local exon 209 460 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 209 460 106 + . alignment_id 1 ; Query CbirOr307 ; Align 209 130 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr293 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 117 -> 225 Target range: 4948 -> 5272 118 : SerIleAsnPheIleThrIleTyrGlyIleValPheCysHisPheGlyIleLeuCysTyrLe : 138 |||:!::::||| ! !! !:!! !! !||| ! !!. !! ! ! !:!:! SerLeuSerPheTyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMe 4949 : TCTCTGTCATTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTAT : 5009 139 : uThrLeuGlnPheLeuProLeuIleLeuAspValIleValProLeuAsnThrSerArgSerL : 159 ! !|||! !|||:!! !!! !|||||||||:!!:!!:!!||||||||| !!!!|||:!!! tCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaA 5010 : GTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCAC : 5072 160 : euLysLeuMetAlaIleThrGluTyrPheValAsnArgGluLysTyrAlaSerAlaMetLeu : 179 ! !!!!:!: ! !.!! ! |||||||||:!!..!!!:|||||| !! ! !!!::!! rgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleVal 5073 : GGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTA : 5132 180 : LeuHisGluIleLeuThrValTyrThrGlyValMetThrLeuCysSerThrGlyLeuThrIl : 200 !||| ! !|||..!||| ! ! !:!! ..!!!!|||:!! !! ! !!.! GlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTy 5133 : GGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTA : 5195 201 : eMetThrTyrIleLeuHisAlaCysAlaLeuLeuLysIleAlaSerHisArgMetLysHisA : 221 !:!! ! !:!:! !|||||||||!.!|||||| ||||||.!! ! !:!::!! rValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***LeuValGlnGlyG 5196 : CGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGAC : 5258 222 : laIleGlnGluAsp : 225 !:!!..!|||:!! lnLeuMetGluAsn 5259 : AATTAATGGAAAAT : 5272 vulgar: CbirOr293 117 225 . LHQN01025741.1 4948 5272 + 122 M 108 324 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4949 5272 122 + . gene_id 1 ; sequence CbirOr293 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4949 5272 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4949 5272 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4949 5272 122 + . alignment_id 1 ; Query CbirOr293 ; Align 4949 118 324 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr293 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 87 -> 214 Target range: 1259 -> 1828 88 : LysValLysGlnLeuIleGlyGlnValGlyAspAspLeuAsnLeuLeuGlnAspLysSerGl : 108 :!!:!!|||:!!:!!|||! ! :!! !:!!|||! ! ! !!:! |||||||| GlnLeuLysGluMetIleGluCysLeuPheAsnAspTrpValThrThrArgProLysSerGl 1260 : CAGCTAAAGGAGATGATAGAGTGCTTATTCAACGATTGGGTAACGACACGGCCGAAAAGTGA : 1320 109 : uIleAspIleIleLysLysTyrAlaAspSerIleAsnPheIleThrIleTyrGlyIle{V} : 128 |!!:||||||!!: ! ||||||||| ! !!! !...|||.!!!:! !! !:!!{|} uMetAspIleMetAspLysTyrAlaLysArgGlyArgPhePheSerArgLeuTyrVal{V}+ 1321 : AATGGACATTATGGACAAGTACGCTAAAAGAGGCCGGTTTTTCAGTCGTTTGTACGTC{G}g : 1381 129 : >>>> Target Intron 1 >>>> {al}PheCysHisPheGlyIleLeuCysTyrLeu : 138 188 bp {||} ! ! ! ||| !! !:!! !:! ! + ++{al}AsnGlyLeuPheCysTyrValIlePheThr 1382 : t.........................ag{TA}AACGGACTGTTTTGCTACGTTATATTCACC : 1598 139 : ThrLeuGlnPheLeuProLeuIleLeuAspValIleValProLeuAsnThrSerArgSerLe : 159 :!!:!! !.!! !|||! !:!!||||||:!!||| !||| !||| !||||||.!!:! SerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyVa 1599 : TCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGT : 1661 160 : uLysLeuMetAlaIleThrGluTyrPheValAsnArgGluLysTyrAlaSerAlaMetLeuL : 180 ! ! !!!!!: ! !.!! ! ||| !:!!:!!..!|||:!!:!! !! ! !:!!:!! lAspPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetG 1662 : TGACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGG : 1724 181 : euHisGluIleLeuThrValTyrThrGlyValMetThrLeuCysSerThrGlyLeuThrIle : 200 !||| !:!!! !..!:!! !..!! ! !!.!...!! ! !||| !! ! !! ! ! lyHisMetLeuCysValIleThrValValPhePheValTyrIleSerCysAspThrIleTyr 1725 : GTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTCTACATCTCCTGTGACACGATCTAC : 1784 201 : MetThrTyrIleLeuHisAlaCysAlaLeuLeuLysIleAla : 214 |||!.! !:!:! !|||||||||!.!||||||!!.:!!:!! MetAsnIleValGlnHisAlaCysGlyLeuLeuAsnValSer 1785 : ATGAATATCGTGCAACACGCGTGCGGATTACTGAACGTCTCT : 1828 vulgar: CbirOr293 87 214 . LHQN01025741.1 1259 1828 + 115 M 40 120 S 0 1 5 0 2 I 0 184 3 0 2 S 1 2 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1260 1828 115 + . gene_id 2 ; sequence CbirOr293 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 1260 1380 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1260 1380 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 1381 1382 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 1381 1568 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 1567 1568 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 1569 1828 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1569 1828 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1260 1828 115 + . alignment_id 2 ; Query CbirOr293 ; Align 1260 88 120 ; Align 1571 129 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr289 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 133 -> 226 Target range: 4993 -> 5272 134 : CysLeuLeuCysAlaGlyIleLeuGlnPheLeuProValIleLeuAspLeuIleLeuProLe : 154 ||| ! ! ! ! !|||! !|||:!! !! !|||||||||:!!:!!:!!||||| CysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLe 4994 : TGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTT : 5054 155 : uAsnGluSerArgProLeuHisLeuIleValPheAlaGluTyrPheIleAsnGlnGluGluT : 175 |||||||!!!||| !!! ! !!!:!! ! ||| ! ||||||:!!:!!:!!!!::!!| uAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysT 5055 : GAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAAT : 5117 176 : yrLeuTyrAlaMetLeuLeuHisGluIlePheAlaValHisLeuAlaAlaIleAlaLeuCys : 195 ||! !||| !!!::!! !||| ! !.!!!.!||| :!! ! ! !!.!!!!||| yrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCys 5118 : ATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGC : 5177 196 : CysThrSerThrThrIleMetSerTyrIleLeuHisGlyCysAlaLeuLeuLysValAlaSe : 216 ..! !..!.!!!.! !:!!! ! !:!:! !|||!.!|||!.!|||||| :!!|||.! AlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGl 5178 : GCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGG : 5240 217 : rTyrArgValGluAsnAlaIleGlyGluAsp : 226 !!! !|||:!!... !:!! !|||:!! y***LeuValGlnGlyGlnLeuMetGluAsn 5241 : GTAATTAGTTCAAGGACAATTAATGGAAAAT : 5272 vulgar: CbirOr289 133 226 . LHQN01025741.1 4993 5272 + 123 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4994 5272 123 + . gene_id 1 ; sequence CbirOr289 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4994 5272 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4994 5272 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4994 5272 123 + . alignment_id 1 ; Query CbirOr289 ; Align 4994 134 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr302PN Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 67 -> 156 Target range: 4969 -> 5239 68 : PheLeuThrIleIleIleSerSerCys<->IleIleTyrGlyIlePheGluAlaMetProVa : 87 ||| !|||:!: !||||||! !||| !:!!!:! ! !!!. ! !:!! !! PheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerPr 4970 : TTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCC : 5030 88 : lIleLeuAspIleIleLeuProLeuAsnLysThrArgProArgGluIleHisAlaLeuLeuG : 108 !||||||||||||:!!:!!|||||||||:!!|||||| !!||| !.!! ! !! ! ! oIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaT 5031 : GATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTT : 5093 109 : luTyrPheIleAspLysAspAlaTyrPhePheProIleLeuCysHisTrpLeuIleGlyLeu : 128 ! ||||||:!!|||:!!||| !||| !!:! !|||:!! ! ||| !! !:!!! !:!! yrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValVal 5094 : ACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTG : 5153 129 : IleIleGlyCysTyrThrIleIleCysValSerThrSerLeuMetIleCysValGlnHisIl : 149 :!!!!: ! !! !..!.!! !..! !..!.!!!:!! !:!! !..!||||||||| ValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAl 5154 : GTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGC : 5216 150 : eSerGlyLeuPheLysValAla : 156 !!!!||||||!!. :!!||| aCysGlyLeuLeuAlaIleAla 5217 : TTGCGGATTGTTGGCCATTGCA : 5239 vulgar: CbirOr302PN 67 156 . LHQN01025741.1 4969 5239 + 108 M 9 27 G 0 3 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4970 5239 108 + . gene_id 1 ; sequence CbirOr302PN ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4970 5239 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4970 5239 . + . insertions 3 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4970 5239 108 + . alignment_id 1 ; Query CbirOr302PN ; Align 4970 68 27 ; Align 5000 77 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr303INT Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 122 -> 201 Target range: 5032 -> 5269 123 : IleLeuAspMetIlePheProLeuAsnGluThrArgProArgGluIleHisAlaLeuThrGl : 143 |||||||||!!::!!.!.|||||||||||||||||| !!||| !.!! ! !! !.!! ! IleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTy 5033 : ATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTA : 5093 144 : uTyrPheIleAspGluArgThrTyrPheCysProIleLeuCysHisTrpLeuIleGlyLeuM : 164 ||||||:!!|||||| !! !||| !! ! !|||:!! ! ||| !! !:!!! !:!!: rTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValV 5094 : CTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGG : 5156 165 : etLeuGlyAlaTyrValValAlaValThrCysThrLeuHisLeuValTyrMetGluHisIle : 184 !::!! ! !! !||| !!..!!.! ! !.!! !:!!:!! ! !:!!:!!||| ! alMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAla 5157 : TAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCT : 5216 185 : CysGlyLeuLeuLysValAlaAsnTyrArgIleGluHisSerLeuAspGlu : 201 |||||||||||| :!!|||...!! !:!!:!! ..!||| ||| CysGlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGlu 5217 : TGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAA : 5269 vulgar: CbirOr303INT 122 201 . LHQN01025741.1 5032 5269 + 107 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5033 5269 107 + . gene_id 1 ; sequence CbirOr303INT ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5033 5269 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5033 5269 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5033 5269 107 + . alignment_id 1 ; Query CbirOr303INT ; Align 5033 123 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr311PI Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 98 -> 176 Target range: 5005 -> 5239 99 : IleIleIleLeuSerSerIleSerPheIleLeuAspAlaIleIleProLeuAsnGluSerAr : 119 .!!!!: !||| !!! !:!:||| ||||||||| !:!!!!:||||||||||||!!!|| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5006 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5066 120 : gProLeuTrpLeuProIleIleValGluTyrPheValAspGlnGluArgTyrPhePheAlaI : 140 | !!! !! !!!! ! ! !!.! ! ||||||||||||:!!!!:!:!||| !!:! !| gAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuI 5067 : AGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGA : 5129 141 : leLeuIleHisThrPheMetPheValTyrValGlyCysIleThrIleAlaAlaIleAlaThr : 160 ||:!! |||! !!:!:!: ! ||| :!! ! ! !..!.!!..!||| !! !.!! leValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 5130 : TCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 5189 161 : MetLeuIleAlaTyrValLeuHisAsnCysAlaIlePheGluValAla : 176 ! ! !:!: ! !|||! !||| !|||!.!:!:!!.! :!!||| AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla 5190 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCA : 5239 vulgar: CbirOr311PI 98 176 . LHQN01025741.1 5005 5239 + 103 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5006 5239 103 + . gene_id 1 ; sequence CbirOr311PI ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5006 5239 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5006 5239 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5006 5239 103 + . alignment_id 1 ; Query CbirOr311PI ; Align 5006 99 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr304CTE Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 129 -> 213 Target range: 4987 -> 5239 130 : ThrLeuCysPheLeuGlyLeuLeuThrLeuGlyCysValProArgIleLeuAspIleIleMe : 150 :!!|||||| ! ! !!!!:!! !||| !! !||| !!! !||||||||||||:!!|| SerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMe 4988 : TCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTAT : 5048 151 : tProLeuAsnGluSerArgProArgGlnLeuProIleIleValGluTyrPheIleAspGluG : 171 |||||||||||||!!!||| !!||| !!!! ! ! !!.! ! ||||||:!!||||||! tProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluA 5049 : GCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGG : 5111 172 : luThrTyrPheTyrAlaIleLeuIleHisIleAlaThrAlaIleTyrAlaGlySerValThr : 191 !:! !||| !||| !|||:!! |||!!: ! !!.!:!: ! !! ! !..! spLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerVal 5112 : ACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTT : 5171 192 : LeuAlaAlaCysAlaThrMetProIleSerTyrIleLeuHisValCysAlaMetPheLysIl : 212 !!!..!||||||! !.!!! !:!:! ! !:!:! !|||!.!|||!.!:!!!!. || PheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIl 5172 : TTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCAT : 5234 213 : eAla : 213 |||| eAla 5235 : TGCA : 5239 vulgar: CbirOr304CTE 129 213 . LHQN01025741.1 4987 5239 + 128 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4988 5239 128 + . gene_id 1 ; sequence CbirOr304CTE ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4988 5239 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4988 5239 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4988 5239 128 + . alignment_id 1 ; Query CbirOr304CTE ; Align 4988 130 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr304CTE Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 121 -> 213 Target range: 1552 -> 1828 122 : ThrIlePhePheLeuLeuLeuAlaThrLeuCysPheLeuGlyLeuLeuThrLeuGlyCysVa : 142 :!!:!:!:!||| !:!! !!.! !!!!|||!:!:!! !!!! !:!!:!!!.! !.. SerLeuTyrPheThrValAsnGlyLeuPheCysTyrValIlePheThrSerValAlaIleTh 1553 : TCTCTGTATTTCACAGTAAACGGACTGTTTTGCTACGTTATATTCACCTCAGTGGCGATTAC : 1613 143 : lProArgIleLeuAspIleIleMetProLeuAsnGluSerArgProArgGlnLeuProIleI : 163 !||||||:!!||||||:!!||| ||| !|||||||||||| ! !.!.!!! ! ! rProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValAspPheIleTyrP 1614 : GCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTCATTTATC : 1676 164 : leValGluTyrPheIleAspGluGluThrTyrPheTyrAlaIleLeuIleHisIleAlaThr : 183 !!.! ! ||| !:!!||||||||| !:!!!:!||| !:!::!! !|||!!: ! ! roAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHisMetLeuCys 1677 : CTGCATACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCACATGCTCTGC : 1736 184 : AlaIleTyrAlaGlySerValThrLeuAlaAlaCysAlaThrMetProIleSerTyrIleLe : 204 !.!||| !!.!! !! ! !!..!! ! !:!!|||! !|||!!: !!!:!:! !:!:! ValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMetAsnIleValGl 1737 : GTGATAACTGTAGTGTTTTTCGTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCA : 1799 205 : uHisValCysAlaMetPheLysIleAla : 213 !|||!.!|||!.!:!:.!.!!.:!!:!! nHisAlaCysGlyLeuLeuAsnValSer 1800 : ACACGCGTGCGGATTACTGAACGTCTCT : 1828 vulgar: CbirOr304CTE 121 213 . LHQN01025741.1 1552 1828 + 127 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1553 1828 127 + . gene_id 2 ; sequence CbirOr304CTE ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1553 1828 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1553 1828 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1553 1828 127 + . alignment_id 2 ; Query CbirOr304CTE ; Align 1553 122 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr295PC(F) Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 132 -> 215 Target range: 1579 -> 1828 133 : PheAspThrLeuCysTyrValThrValGluLeuLeuProLeuIleLeuAspValIleSerPr : 153 ||| ! !:!! !:!..!:!!|||! !:!! !|||! !:!!||||||:!!|||||||| PheCysTyrValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerPr 1580 : TTTTGCTACGTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACC : 1640 154 : oLeuAsnLysSerArgSerLeuLysLeuIleAlaAsnThrGluTyrPheValAsnArgGluL : 174 | !|||:!!||||||.!!:!! ! !!!||| ! !.!! ! ||| !:!!:!!..!|||: oLysAsnGluSerArgGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAspGluGluG 1641 : GAAAAACGAATCGCGTGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAGG : 1703 175 : ysTyrIleTrpValMetLeuLeuHisGluIleThrAlaIleTyrIleArgValIleThrVal : 194 !!:!! !!:::!!:!!:!! !||| !:!! !!.!||| !:!! ! !!.!!..! ! luHisTyrTyrIleLeuMetGlyHisMetLeuCysValIleThrValValPhePheValTyr 1704 : AACATTATTACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTCTAC : 1763 195 : CysCysThrSerValThrIleMetMetTyrIleLeuHisAlaCysAlaLeuPheLysValAl : 215 !! ! !..!..!! ! !|||! !:!:! !|||||||||!.!|||.!.!!.|||:! IleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnValSe 1764 : ATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGCGGATTACTGAACGTCTC : 1826 216 : a : 215 ! r 1827 : T : 1828 vulgar: CbirOr295PC(F) 132 215 . LHQN01025741.1 1579 1828 + 108 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1580 1828 108 + . gene_id 1 ; sequence CbirOr295PC(F) ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1580 1828 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1580 1828 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1580 1828 108 + . alignment_id 1 ; Query CbirOr295PC(F) ; Align 1580 133 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr306 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 141 -> 213 Target range: 5023 -> 5239 142 : ValProSerLeuLeuAspIleIleIleProLeuAsnGluSerArgProSerTrpLeuProIl : 162 ||| !! !!:!!|||||||||:!!!!:||||||||||||!!!||| !! !!! !!!! ! ValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTy 5024 : GTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTA : 5084 163 : eValAlaGluTyrPheValAspGlnGlnArgTyrPheTyrAlaIleLeuIleHisIlePheI : 183 ! !||| ! ||||||||||||:!!.!.!:!||| !||| !|||:!! |||!!:!:!: rProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrL 5085 : TCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATC : 5147 184 : leValValTyrAlaGlySerMetAlaIleAlaSerValAlaGlyMetMetLeuGlyTyrVal : 203 !!|||||| ! !! ! !.!.!!..!:!! !! !!.!! :!! ! !||| euValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaVal 5148 : TTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTG : 5207 204 : LeuHisAsnCysAlaIlePheLysIleAla : 213 ! !||| !|||!.!:!:!!. |||||| GlnHisAlaCysGlyLeuLeuAlaIleAla 5208 : CAACACGCTTGCGGATTGTTGGCCATTGCA : 5239 vulgar: CbirOr306 141 213 . LHQN01025741.1 5023 5239 + 112 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5024 5239 112 + . gene_id 1 ; sequence CbirOr306 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5024 5239 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5024 5239 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5024 5239 112 + . alignment_id 1 ; Query CbirOr306 ; Align 5024 142 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr305 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 136 -> 212 Target range: 5008 -> 5236 137 : LeuSerLeuSerPheValSerProIleLeuAspValIleIleProMetAsnValSerArgSe : 157 :!!!!!||| !!|||||||||||||||||||||:!!:!!!!:|||:!!|||! !!!!|||:! MetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAl 5009 : ATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGC : 5069 158 : rLeuArgLeuProIleValAlaGluTyrPheValAspGlnThrArgTyrPheTyrProIleM : 178 !! ! !!!! ! ! !||| ! ||||||||||||:!! !!:!||| !||| !|||: aArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleV 5070 : ACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCG : 5132 179 : etIleHisIlePheIleValSerTyrValCysLeuMetThrLeuValAlaIleIleAlaLeu : 198 !: |||!!:!:!:!!||| ! :!! !:!! ..!!!! !||| ! !||| ! alGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsn 5133 : TAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAAT : 5192 199 : LeuIleAlaTyrValMetHisAsnCysAlaIlePheGluIle : 212 ! !:!: ! !|||...||| !|||!.!:!:!!.! ||| TyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 5193 : TACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 5236 vulgar: CbirOr305 136 212 . LHQN01025741.1 5008 5236 + 133 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5009 5236 133 + . gene_id 1 ; sequence CbirOr305 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5009 5236 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5009 5236 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5009 5236 133 + . alignment_id 1 ; Query CbirOr305 ; Align 5009 137 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr307 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 137 -> 213 Target range: 5008 -> 5236 138 : IleSerLeuAlaPheAlaSerThrIleLeuAspIleIleIleProLeuAsnGluSerArgPr : 158 !!:!!!||| !!|||!.!||| !!||||||||||||:!!!!:||||||||||||!!!||| ! MetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAl 5009 : ATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGC : 5069 159 : oLeuArgLeuProIleGluValGluTyrPheValAspGlnGlnArgTyrPheTyrAlaIleS : 179 !! ! !!!! ! ! !!.! ! ||||||||||||:!!.!.!:!||| !||| !||| aArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleV 5070 : ACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCG : 5132 180 : erLeuHisMetGlyMetThrPheTyrAlaGlyMetMetIleMetThrAlaIleThrThrIle : 199 ! !|||||| !:!:..! ! ! !!!: :!!.!. !||| ! !.!!! ! alGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsn 5133 : TAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAAT : 5192 200 : PheIleAlaTyrValSerHisAsnCysAlaIlePheGluIle : 213 !:!:!: ! !|||..!||| !|||!.!:!:!!.! ||| TyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 5193 : TACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 5236 vulgar: CbirOr307 137 213 . LHQN01025741.1 5008 5236 + 119 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5009 5236 119 + . gene_id 1 ; sequence CbirOr307 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5009 5236 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5009 5236 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5009 5236 119 + . alignment_id 1 ; Query CbirOr307 ; Align 5009 138 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr293 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 117 -> 225 Target range: 5714 -> 5390 118 : SerIleAsnPheIleThrIleTyrGlyIleValPheCysHisPheGlyIleLeuCysTyrLe : 138 |||:!::::||| ! !! !:!! !! !||| ! !!. !! ! ! !:!:! SerLeuSerPheCysPheThrPheGluLysValHisIleSerLeuCysAlaAlaLeuPheMe 5714 : TCTCTGTCATTCTGTTTCACGTTTGAAAAAGTGCATATATCGTTATGCGCCGCTCTATTTAT : 5654 139 : uThrLeuGlnPheLeuProLeuIleLeuAspValIleValProLeuAsnThrSerArgSerL : 159 ! !|||! !|||:!! !!! !|||||||||:!!:!!:!!||||||||| !!!!|||:!!! tCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaA 5653 : GTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCAC : 5591 160 : euLysLeuMetAlaIleThrGluTyrPheValAsnArgGluLysTyrAlaSerAlaMetLeu : 179 ! !!!!:!: ! !.!! ! |||||||||:!!..!!!:|||||| !! ! !!!::!! rgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuIleVal 5590 : GGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTA : 5531 180 : LeuHisGluIleLeuThrValTyrThrGlyValMetThrLeuCysSerThrGlyLeuThrIl : 200 !||| ! !|||..!||| ! ! !:!! ..!!!!|||:!! !! ! !!.! GlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTy 5530 : GGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTA : 5468 201 : eMetThrTyrIleLeuHisAlaCysAlaLeuLeuLysIleAlaSerHisArgMetLysHisA : 221 !:!! ! !:!:! !|||||||||!.!|||||| ||||||.!! ! !:!::!! rValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***LeuValGlnGlyG 5467 : CGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGAC : 5405 222 : laIleGlnGluAsp : 225 !:!!..!|||:!! lnLeuMetGluAsn 5404 : AATTAATGGAAAAT : 5391 vulgar: CbirOr293 117 225 . LHQN01028732.1 5714 5390 - 121 M 108 324 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5391 5714 121 - . gene_id 1 ; sequence CbirOr293 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5391 5714 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5391 5714 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5391 5714 121 - . alignment_id 1 ; Query CbirOr293 ; Align 5715 118 324 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr289 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 133 -> 226 Target range: 5669 -> 5390 134 : CysLeuLeuCysAlaGlyIleLeuGlnPheLeuProValIleLeuAspLeuIleLeuProLe : 154 ||| ! ! ! ! !|||! !|||:!! !! !|||||||||:!!:!!:!!||||| CysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLe 5669 : TGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTT : 5609 155 : uAsnGluSerArgProLeuHisLeuIleValPheAlaGluTyrPheIleAsnGlnGluGluT : 175 |||||||!!!||| !!! ! !!!:!! ! ||| ! ||||||:!!:!!:!!!!::!!| uAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysT 5608 : GAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAAT : 5546 176 : yrLeuTyrAlaMetLeuLeuHisGluIlePheAlaValHisLeuAlaAlaIleAlaLeuCys : 195 ||! !||| !!!::!! !||| ! !.!!!.!||| :!! ! ! !!.!!!!||| yrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCys 5545 : ATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGC : 5486 196 : CysThrSerThrThrIleMetSerTyrIleLeuHisGlyCysAlaLeuLeuLysValAlaSe : 216 ..! !..!.!!!.! !:!!! ! !:!:! !|||!.!|||!.!|||||| :!!|||.! AlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGl 5485 : GCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGG : 5423 217 : rTyrArgValGluAsnAlaIleGlyGluAsp : 226 !!! !|||:!!... !:!! !|||:!! y***LeuValGlnGlyGlnLeuMetGluAsn 5422 : GTAATTAGTTCAAGGACAATTAATGGAAAAT : 5391 vulgar: CbirOr289 133 226 . LHQN01028732.1 5669 5390 - 124 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5391 5669 124 - . gene_id 1 ; sequence CbirOr289 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5391 5669 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5391 5669 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5391 5669 124 - . alignment_id 1 ; Query CbirOr289 ; Align 5670 134 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr302PN Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 87 -> 156 Target range: 5630 -> 5423 88 : IleLeuAspIleIleLeuProLeuAsnLysThrArgProArgGluIleHisAlaLeuLeuGl : 108 ||||||||||||:!!:!!|||||||||:!!|||||| !!||| !.!! ! !! ! ! ! IleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTy 5630 : ATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTA : 5570 109 : uTyrPheIleAspLysAspAlaTyrPhePheProIleLeuCysHisTrpLeuIleGlyLeuI : 129 ||||||:!!|||:!!||| !||| !!:! !|||:!! ! ||| !! !:!!! !:!!: rTyrPheValAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValV 5569 : CTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGG : 5507 130 : leIleGlyCysTyrThrIleIleCysValSerThrSerLeuMetIleCysValGlnHisIle : 149 !!!!: ! !! !..!.!! !..! !..!.!!!:!! !:!! !..!||||||||| ! alMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAla 5506 : TAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCT : 5447 150 : SerGlyLeuPheLysValAla : 156 !!!||||||!!. :!!||| CysGlyLeuLeuAlaIleAla 5446 : TGCGGATTGTTGGCCATTGCA : 5424 vulgar: CbirOr302PN 87 156 . LHQN01028732.1 5630 5423 - 106 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5424 5630 106 - . gene_id 1 ; sequence CbirOr302PN ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5424 5630 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5424 5630 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5424 5630 106 - . alignment_id 1 ; Query CbirOr302PN ; Align 5631 88 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr306 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 141 -> 213 Target range: 5639 -> 5423 142 : ValProSerLeuLeuAspIleIleIleProLeuAsnGluSerArgProSerTrpLeuProIl : 162 ||| !! !!:!!|||||||||:!!!!:||||||||||||!!!||| !! !!! !!!! ! ValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTy 5639 : GTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTA : 5579 163 : eValAlaGluTyrPheValAspGlnGlnArgTyrPheTyrAlaIleLeuIleHisIlePheI : 183 ! !||| ! ||||||||||||:!!.!.!:!||| !||| !|||:!! |||!!:!:!: rProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrL 5578 : TCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATC : 5516 184 : leValValTyrAlaGlySerMetAlaIleAlaSerValAlaGlyMetMetLeuGlyTyrVal : 203 !!|||||| ! !! ! !.!.!!..!:!! !! !!.!! :!! ! !||| euValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaVal 5515 : TTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTG : 5456 204 : LeuHisAsnCysAlaIlePheLysIleAla : 213 ! !||| !|||!.!:!:!!. |||||| GlnHisAlaCysGlyLeuLeuAlaIleAla 5455 : CAACACGCTTGCGGATTGTTGGCCATTGCA : 5424 vulgar: CbirOr306 141 213 . LHQN01028732.1 5639 5423 - 110 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5424 5639 110 - . gene_id 1 ; sequence CbirOr306 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5424 5639 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5424 5639 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5424 5639 110 - . alignment_id 1 ; Query CbirOr306 ; Align 5640 142 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr307 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 137 -> 213 Target range: 5654 -> 5426 138 : IleSerLeuAlaPheAlaSerThrIleLeuAspIleIleIleProLeuAsnGluSerArgPr : 158 !!:!!!||| !!|||!.!||| !!||||||||||||:!!!!:||||||||||||!!!||| ! MetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAl 5654 : ATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGC : 5594 159 : oLeuArgLeuProIleGluValGluTyrPheValAspGlnGlnArgTyrPheTyrAlaIleS : 179 !! ! !!!! ! ! !!.! ! ||||||||||||:!!.!.!:!||| !||| !||| aArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuIleV 5593 : ACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCG : 5531 180 : erLeuHisMetGlyMetThrPheTyrAlaGlyMetMetIleMetThrAlaIleThrThrIle : 199 ! !|||||| !:!:..! ! ! !!!: :!!.!. !||| ! !.!!! ! alGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsn 5530 : TAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAAT : 5471 200 : PheIleAlaTyrValSerHisAsnCysAlaIlePheGluIle : 213 !:!:!: ! !|||..!||| !|||!.!:!:!!.! ||| TyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 5470 : TACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 5427 vulgar: CbirOr307 137 213 . LHQN01028732.1 5654 5426 - 117 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5427 5654 117 - . gene_id 1 ; sequence CbirOr307 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5427 5654 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5427 5654 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5427 5654 117 - . alignment_id 1 ; Query CbirOr307 ; Align 5655 138 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr305 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 136 -> 212 Target range: 5654 -> 5426 137 : LeuSerLeuSerPheValSerProIleLeuAspValIleIleProMetAsnValSerArgSe : 157 :!!!!!||| !!|||||||||||||||||||||:!!:!!!!:|||:!!|||! !!!!|||:! MetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAl 5654 : ATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGC : 5594 158 : rLeuArgLeuProIleValAlaGluTyrPheValAspGlnThrArgTyrPheTyrProIleM : 178 !! ! !!!! ! ! !||| ! ||||||||||||:!! !!:!||| !||| !|||: aArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuIleV 5593 : ACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCG : 5531 179 : etIleHisIlePheIleValSerTyrValCysLeuMetThrLeuValAlaIleIleAlaLeu : 198 !: |||!!:!:!:!!||| ! :!! !:!! ..!!!! !||| ! !||| ! alGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsn 5530 : TAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAAT : 5471 199 : LeuIleAlaTyrValMetHisAsnCysAlaIlePheGluIle : 212 ! !:!: ! !|||...||| !|||!.!:!:!!.! ||| TyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 5470 : TACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 5427 vulgar: CbirOr305 136 212 . LHQN01028732.1 5654 5426 - 131 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5427 5654 131 - . gene_id 1 ; sequence CbirOr305 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5427 5654 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5427 5654 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5427 5654 131 - . alignment_id 1 ; Query CbirOr305 ; Align 5655 137 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr303INT Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 122 -> 201 Target range: 5630 -> 5393 123 : IleLeuAspMetIlePheProLeuAsnGluThrArgProArgGluIleHisAlaLeuThrGl : 143 |||||||||!!::!!.!.|||||||||||||||||| !!||| !.!! ! !! !.!! ! IleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTy 5630 : ATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTA : 5570 144 : uTyrPheIleAspGluArgThrTyrPheCysProIleLeuCysHisTrpLeuIleGlyLeuM : 164 ||||||:!!|||||| !! !||| !! ! !|||:!! ! ||| !! !:!!! !:!!: rTyrPheValAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValV 5569 : CTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGG : 5507 165 : etLeuGlyAlaTyrValValAlaValThrCysThrLeuHisLeuValTyrMetGluHisIle : 184 !::!! ! !! !||| !!..!!.! ! !.!! !:!!:!! ! !:!!:!!||| ! alMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAla 5506 : TAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCT : 5447 185 : CysGlyLeuLeuLysValAlaAsnTyrArgIleGluHisSerLeuAspGlu : 201 |||||||||||| :!!|||...!! !:!!:!! ..!||| ||| CysGlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGlu 5446 : TGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAA : 5394 vulgar: CbirOr303INT 122 201 . LHQN01028732.1 5630 5393 - 105 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5394 5630 105 - . gene_id 1 ; sequence CbirOr303INT ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5394 5630 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5394 5630 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5394 5630 105 - . alignment_id 1 ; Query CbirOr303INT ; Align 5631 123 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr311PI Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 98 -> 176 Target range: 5657 -> 5423 99 : IleIleIleLeuSerSerIleSerPheIleLeuAspAlaIleIleProLeuAsnGluSerAr : 119 .!!!!: !||| !!! !:!:||| ||||||||| !:!!!!:||||||||||||!!!|| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5657 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5597 120 : gProLeuTrpLeuProIleIleValGluTyrPheValAspGlnGluArgTyrPhePheAlaI : 140 | !!! !! !!!! ! ! !!.! ! ||||||||||||:!!!!:!:!||| !!:! !| gAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuI 5596 : AGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGA : 5534 141 : leLeuIleHisThrPheMetPheValTyrValGlyCysIleThrIleAlaAlaIleAlaThr : 160 ||:!! |||! !!:!:!: ! ||| :!! ! ! !..!.!!..!||| !! !.!! leValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 5533 : TCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 5474 161 : MetLeuIleAlaTyrValLeuHisAsnCysAlaIlePheGluValAla : 176 ! ! !:!: ! !|||! !||| !|||!.!:!:!!.! :!!||| AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla 5473 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCA : 5424 vulgar: CbirOr311PI 98 176 . LHQN01028732.1 5657 5423 - 101 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5424 5657 101 - . gene_id 1 ; sequence CbirOr311PI ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5424 5657 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5424 5657 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5424 5657 101 - . alignment_id 1 ; Query CbirOr311PI ; Align 5658 99 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr304CTE Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 129 -> 213 Target range: 5675 -> 5423 130 : ThrLeuCysPheLeuGlyLeuLeuThrLeuGlyCysValProArgIleLeuAspIleIleMe : 150 :!!|||||| ! ! !!!!:!! !||| !! !||| !!! !||||||||||||:!!|| SerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMe 5675 : TCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTAT : 5615 151 : tProLeuAsnGluSerArgProArgGlnLeuProIleIleValGluTyrPheIleAspGluG : 171 |||||||||||||!!!||| !!||| !!!! ! ! !!.! ! ||||||:!!||||||! tProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluA 5614 : GCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGG : 5552 172 : luThrTyrPheTyrAlaIleLeuIleHisIleAlaThrAlaIleTyrAlaGlySerValThr : 191 !:! !||| !||| !|||:!! |||!!: ! !!.!:!: ! !! ! !..! spLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerVal 5551 : ACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTT : 5492 192 : LeuAlaAlaCysAlaThrMetProIleSerTyrIleLeuHisValCysAlaMetPheLysIl : 212 !!!..!||||||! !.!!! !:!:! ! !:!:! !|||!.!|||!.!:!!!!. || PheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIl 5491 : TTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCAT : 5429 213 : eAla : 213 |||| eAla 5428 : TGCA : 5424 vulgar: CbirOr304CTE 129 213 . LHQN01028732.1 5675 5423 - 126 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5424 5675 126 - . gene_id 1 ; sequence CbirOr304CTE ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5424 5675 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5424 5675 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5424 5675 126 - . alignment_id 1 ; Query CbirOr304CTE ; Align 5676 130 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr311PI Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 96 -> 213 Target range: 466 -> 912 97 : MetGlyIleIleIleLeuSerSerIleSerPheIleLeuAspAlaIleIleProLeuAsnGluS : 118 :!:|||.!!:!!.!!|||..!! !:!! !! ||||||! ! !||| !||||||!.!|||! LeuGlyPheValPheLeuGlnIleLeuProGlnIleLeuGlyIleIleSerProLeuThrGluI 467 : CTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAATTTTAGGCATAATTTCACCTCTAACCGAGA : 530 119 : erArgProLeuTrpLeuProIleIleValGluTyrPheValAspGlnGluArgTyrPhePheAl : 139 !!.! !! ! |||! !:!! !..!||||||||||||||| ! :!! !|||.!!!:! leAsnThrAsnLysLeuLeuValArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLe 531 : TCAATACTAACAAATTACTCGTTCGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCT : 593 140 : aIleLeuIleHisThrPheMetPheValTyrValGlyCysIleThrIleAlaAlaIleAlaThr : 160 !||| !||||||.!! !!!: :!! !.!! ! !! ! ! !::!! !! !! uIleThrIleHisAlaThrIleAlaIleMetCysSerValThrMetGlnIleSerSerAspIle 594 : AATCACGATCCACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAtt : 656 161 : MetLeuIleAlaTyrValLeuHisAsnCysAlaIlePheGluValAla{Se} >>>> Targe : 177 ::: :::::!:!!|||! ! !!!.!!!:||||||||| !{.!} LeuAsnAsnIlePheMetMetHisIleSerGlyMetPheGluValIle{Gl}++ 657 : ttgaataacatatttatGATGCACATCAGTGGAATGTTCGAGGTAATT{GG}gt.......... : 711 178 : t Intron 1 >>>> {r}TyrArgIleGluHisIlePheAspLysThrIleLeuGlnMetSe : 192 95 bp {!} ! !:!!||||||:!:||||||||| !! ! ! .. ++{y}IleValValGluHisLeuPheAspLysCysLysSerAlaAspGl 712 : ...............ag{G}ATTGTTGTCGAGCATCTGTTCGACAAATGCAAAAGTGCTGACGA : 847 193 : rLysAspIleArgGlnHisIleLeuTyrGluArgLeuIleHisAlaValTyrLeuHisArgArg : 213 !!!. ! !..!.!.! |||!!!||| !||||||:!:!.! !:!! !!:!!||||||||| uAsnIleAspGluAsnLeuIlePheTyrThrArgLeuLeuArgIleMetAsnMetHisArgArg 848 : GAATATCGACGAAAATCTGATTTTCTACACACGGTTGCTGCGTATTATGAACATGCACAGAAGA : 910 vulgar: CbirOr311PI 96 213 . LHQN01050134.1 466 912 + 120 M 80 240 S 0 2 5 0 2 I 0 91 3 0 2 S 1 1 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 467 912 120 + . gene_id 1 ; sequence CbirOr311PI ; gene_orientation + LHQN01050134.1 exonerate:protein2genome:local cds 467 708 . + . LHQN01050134.1 exonerate:protein2genome:local exon 467 708 . + . insertions 0 ; deletions 0 LHQN01050134.1 exonerate:protein2genome:local splice5 709 710 . + . intron_id 1 ; splice_site "GT" LHQN01050134.1 exonerate:protein2genome:local intron 709 803 . + . intron_id 1 LHQN01050134.1 exonerate:protein2genome:local splice3 802 803 . + . intron_id 0 ; splice_site "AG" LHQN01050134.1 exonerate:protein2genome:local cds 804 912 . + . LHQN01050134.1 exonerate:protein2genome:local exon 804 912 . + . insertions 0 ; deletions 0 LHQN01050134.1 exonerate:protein2genome:local similarity 467 912 120 + . alignment_id 1 ; Query CbirOr311PI ; Align 467 97 240 ; Align 805 178 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr306 Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 123 -> 250 Target range: 436 -> 912 124 : LeuPheThrLeuLeuAlaLeuSerIleSerLeuGlyIleIleValLeuCysSerValProSerL : 145 :!!.!! !!:!!!!!:!!!!!! !:!! !||||||.!!:!! !!||| ! !:!!|||..!: IleIleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuProGlnI 437 : ATTATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAA : 500 146 : euLeuAspIleIleIleProLeuAsnGluSerArgProSerTrpLeuProIleValAlaGluTy : 166 !!|||! !|||||| !||||||!.!|||! !!.! !!!:! |||! !:!! !.!!||||| leLeuGlyIleIleSerProLeuThrGluIleAsnThrAsnLysLeuLeuValArgThrGluTy 501 : TTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAACAAATTACTCGTTCGAACCGAATA : 563 167 : rPheValAspGlnGlnArgTyrPheTyrAlaIleLeuIleHisIlePheIleValValTyrAla : 187 |||||||||| ! :!! !|||.!!||| !||| !|||||| !|||!.!:!! ..! rPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAlaThrIleAlaIleMetCys 564 : CTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCGACTATAGCAATAATGTGT : 626 188 : GlySerMetAlaIleAlaSerValAlaGlyMetMetLeuGlyTyrValLeuHisAsnCysAlaI : 209 .!! !! ! ! !||| !! ! ::: :::::!:!!|||! ! !!!.!! SerValThrMetGlnIleSerSerAspIleLeuAsnAsnIlePheMetMetHisIleSerGlyM 627 : AGTGTGACTATGCAAATTAGCAGCGATAttttgaataacatatttatGATGCACATCAGTGGAA : 692 210 : lePheLysIleAla{Se} >>>> Target Intron 1 >>>> {r}TyrArgIleGluHi : 219 !:|||:!!:!! !{.!} 95 bp {!} ! !:!!||||| etPheGluValIle{Gl}++ ++{y}IleValValGluHi 693 : TGTTCGAGGTAATT{GG}gt.........................ag{G}ATTGTTGTCGAGCA : 817 220 : sIlePheAspGluLysIleLeuGlnMetSerLysThrIleGlyGlnTyrValLeuTyrGluArg : 240 |:!:||||||:!! ! ! ! ..!!!.! ! !! !.!. :!!!!!||| !||| sLeuPheAspLysCysLysSerAlaAspGluAsnIleAspGluAsnLeuIlePheTyrThrArg 818 : TCTGTTCGACAAATGCAAAAGTGCTGACGAGAATATCGACGAAAATCTGATTTTCTACACACGG : 880 241 : LeuIleHisAlaValHisLeuHisArgArg : 250 |||:!:!.! !:!!:!!:!!||||||||| LeuLeuArgIleMetAsnMetHisArgArg 881 : TTGCTGCGTATTATGAACATGCACAGAAGA : 912 vulgar: CbirOr306 123 250 . LHQN01050134.1 436 912 + 135 M 90 270 S 0 2 5 0 2 I 0 91 3 0 2 S 1 1 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 437 912 135 + . gene_id 1 ; sequence CbirOr306 ; gene_orientation + LHQN01050134.1 exonerate:protein2genome:local cds 437 708 . + . LHQN01050134.1 exonerate:protein2genome:local exon 437 708 . + . insertions 0 ; deletions 0 LHQN01050134.1 exonerate:protein2genome:local splice5 709 710 . + . intron_id 1 ; splice_site "GT" LHQN01050134.1 exonerate:protein2genome:local intron 709 803 . + . intron_id 1 LHQN01050134.1 exonerate:protein2genome:local splice3 802 803 . + . intron_id 0 ; splice_site "AG" LHQN01050134.1 exonerate:protein2genome:local cds 804 912 . + . LHQN01050134.1 exonerate:protein2genome:local exon 804 912 . + . insertions 0 ; deletions 0 LHQN01050134.1 exonerate:protein2genome:local similarity 437 912 135 + . alignment_id 1 ; Query CbirOr306 ; Align 437 124 270 ; Align 805 215 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr300PSE(S/F) Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 111 -> 212 Target range: 400 -> 703 112 : LysGlnTyrLeuAsnAsnSerArgLeuPheMetIleIlePheThrSerPheAlaThrMetSerV : 133 !:!:!! !!!||| !!.!! !:!! !.!. !|||.!! !! !|||:!! !:!! !: ArgGluThrPheAsnProLysMetIleAspPheSerIleIleProValPheSerPheLeuLeuL 401 : AGGGAGACATTTAACCCTAAAATGATCGATTTTTCCATTATTCCAGTGTTCTCATTTTTGCTAC : 464 134 : alCysAlaPheThrPheIleGlnLeuLeuProValThrLeuAspValIleIleProLeuAsnVa : 154 !! !!.!|||..!|||:!:|||:!!|||||| !! !|||! !:!!||| !||||||!.!! euLeuGlyPheValPheLeuGlnIleLeuProGlnIleLeuGlyIleIleSerProLeuThrGl 465 : TCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAATTTTAGGCATAATTTCACCTCTAACCGA : 527 155 : lSerArgProArgArgPheTyrPheArgLeuGluLeuPheIleAsnLysGluLysTyrPheTyr : 175 !! !!.! !!!.!!:!!!. ! !!||| !|||! !|||:!!:!! ! :!! ! |||.!!||| uIleAsnThrAsnLysLeuLeuValArgThrGluTyrPheValAspTyrLysAspTyrIleTyr 528 : GATCAATACTAACAAATTACTCGTTCGAACCGAATACTTTGTCGACTACAAAGATTACATTTAT : 590 176 : ValIleAlaPheTyrThrIleLeuSerLeuCysValSerAlaAlaThrIleValSerThrGlyA : 197 :!!|||.!!.!!:!!.!!! !:!!:!!:!! !|||!.!.!!! ! !:!!|||!:!! ! LeuIleThrIleHisAlaThrIleAlaIleMetCysSerValThrMetGlnIleSerSerAspI 591 : CTAATCACGATCCACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATA : 656 198 : laSerLeuLeuThrPheGlyGlnHisSerCysAlaMetLeuLysIle : 212 ||| !..!|||! ! !!!.!|||!!!:!!:!! leLeuAsnAsnIlePheMetMetHisIleSerGlyMetPheGluVal 657 : ttttgaataacatatttatGATGCACATCAGTGGAATGTTCGAGGTA : 703 vulgar: CbirOr300PSE(S/F) 111 212 . LHQN01050134.1 400 703 + 104 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 401 703 104 + . gene_id 1 ; sequence CbirOr300PSE(S/F) ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 401 703 . + . LHQN01050134.1 exonerate:protein2genome:local exon 401 703 . + . insertions 0 ; deletions 0 LHQN01050134.1 exonerate:protein2genome:local similarity 401 703 104 + . alignment_id 1 ; Query CbirOr300PSE(S/F) ; Align 401 112 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr307 Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 124 -> 214 Target range: 436 -> 706 125 : IlePheMetLeuIleAlaThrSerValValLeuGlyValIleSerLeuAlaPheAlaSerThrI : 146 |||.!! :!!.!!:!! !! !:!!:!!|||||| !!:!!! !||| !.!! ! !! !| IleIleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuProGlnI 437 : ATTATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAA : 500 147 : leLeuAspIleIleIleProLeuAsnGluSerArgProLeuArgLeuProIleGluValGluTy : 167 |||||! !|||||| !||||||!.!|||! !!.! !! !!:!|||! !:!!..!..!||||| leLeuGlyIleIleSerProLeuThrGluIleAsnThrAsnLysLeuLeuValArgThrGluTy 501 : TTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAACAAATTACTCGTTCGAACCGAATA : 563 168 : rPheValAspGlnGlnArgTyrPheTyrAlaIleSerLeuHisMetGlyMetThrPheTyrAla : 188 |||||||||| ! :!! !|||.!!||| !|||!!!:!!||| ! !!!:.!!.!. ..! rPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAlaThrIleAlaIleMetCys 564 : CTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCGACTATAGCAATAATGTGT : 626 189 : GlyMetMetIleMetThrAlaIleThrThrIlePheIleAlaTyrValSerHisAsnCysAlaI : 210 .!!:!!! !!:...! !::!! ! !! ::: :::::!! !|||! ! !!!.!! SerValThrMetGlnIleSerSerAspIleLeuAsnAsnIlePheMetMetHisIleSerGlyM 627 : AGTGTGACTATGCAAATTAGCAGCGATAttttgaataacatatttatGATGCACATCAGTGGAA : 692 211 : lePheGluIleVal : 214 !:||||||:!!:!! etPheGluValIle 693 : TGTTCGAGGTAATT : 706 vulgar: CbirOr307 124 214 . LHQN01050134.1 436 706 + 109 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 437 706 109 + . gene_id 1 ; sequence CbirOr307 ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 437 706 . + . LHQN01050134.1 exonerate:protein2genome:local exon 437 706 . + . insertions 0 ; deletions 0 LHQN01050134.1 exonerate:protein2genome:local similarity 437 706 109 + . alignment_id 1 ; Query CbirOr307 ; Align 437 125 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr303INT Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 113 -> 190 Target range: 472 -> 703 114 : TyrAlaIlePheGluAlaMetProIleIleLeuAspMetIlePheProLeuAsnGluThrArgP : 135 !:!!.!.!!!!.:!! !:!:||| !||||||! !!!:|||! ||||||!.!|||! !!.! PheValPheLeuGlnIleLeuProGlnIleLeuGlyIleIleSerProLeuThrGluIleAsnT 473 : TTCGTTTTCTTGCAAATTCTCCCGCAAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATA : 536 136 : roArgGluIleHisAlaLeuThrGluTyrPheIleAspGluArgThrTyrPheCysProIleLe : 156 !!!.!:!!:!!! !!.!! !||||||||||||:!!||| ! !:! !|||.!!! !! !||| hrAsnLysLeuLeuValArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleTh 537 : CTAACAAATTACTCGTTCGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCAC : 599 157 : uCysHisTrpLeuIleGlyLeuMetLeuGlyAlaTyrValValAlaValThrCysThrLeuHis : 177 ! !||| ! !|||!.!:!!|||! !.!!!.! !:!! ! ! !!:! !! |||::: rIleHisAlaThrIleAlaIleMetCysSerValThrMetGlnIleSerSerAspIleLeuAsn 600 : GATCCACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaat : 662 178 : LeuValTyrMetGluHisIleCysGlyLeuLeuLysVal : 190 ::::::||| !|||||| !!|||:!!!!!:!!||| AsnIlePheMetMetHisIleSerGlyMetPheGluVal 663 : aacatatttatGATGCACATCAGTGGAATGTTCGAGGTA : 703 vulgar: CbirOr303INT 113 190 . LHQN01050134.1 472 703 + 107 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 473 703 107 + . gene_id 1 ; sequence CbirOr303INT ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 473 703 . + . LHQN01050134.1 exonerate:protein2genome:local exon 473 703 . + . insertions 0 ; deletions 0 LHQN01050134.1 exonerate:protein2genome:local similarity 473 703 107 + . alignment_id 1 ; Query CbirOr303INT ; Align 473 114 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr299PN(F) Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 75 -> 145 Target range: 436 -> 646 76 : PheIleThrValGlyMetPheIleThrLeuAlaValPheGlyPheTyrGlnPheLeuProAspL : 97 .!!||| !!||| ! |||:!: !||| !! !|||! !|||! |||.!!||||||.!.: IleIleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuProGlnI 437 : ATTATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAA : 500 98 : euLeuAspMetIleAlaProLeuAsnAspSerArgLysHisPheLeuThrPheAspAlaGluTy : 118 !!|||! !!!:|||:!!||||||!.!!!:! !!.!! :!! ||| ! !! .!!||||| leLeuGlyIleIleSerProLeuThrGluIleAsnThrAsnLysLeuLeuValArgThrGluTy 501 : TTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAACAAATTACTCGTTCGAACCGAATA : 563 119 : rPheValAspGlnLysGluTyrPheTyrProIleValThrHisGlyLeuThrAlaValTyrIle : 139 |||||||||| ! |||!!:|||.!!|||! !|||..!! !|||!.! !! !|||:!! ! rPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAlaThrIleAlaIleMetCys 564 : CTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCGACTATAGCAATAATGTGT : 626 140 : GlyGlyThrValGlyIle : 145 .!!! !|||:!! !||| SerValThrMetGlnIle 627 : AGTGTGACTATGCAAATT : 646 vulgar: CbirOr299PN(F) 75 145 . LHQN01050134.1 436 646 + 117 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 437 646 117 + . gene_id 1 ; sequence CbirOr299PN(F) ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 437 646 . + . LHQN01050134.1 exonerate:protein2genome:local exon 437 646 . + . insertions 0 ; deletions 0 LHQN01050134.1 exonerate:protein2genome:local similarity 437 646 117 + . alignment_id 1 ; Query CbirOr299PN(F) ; Align 437 76 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr325PI(F) Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 157 -> 211 Target range: 357476 -> 357638 158 : ArgLeuTyrIleAlaValGluTyrPheIleAspGlnGluLysTyrTyrTyrValIleL : 177 !.!||||||.!!.!!:!!!!:||||||:!!|||...|||||||||:::||||||! ! AsnLeuTyrPheThrIleAspTyrPheValAspAspGluLysTyrPheTyrValLysP 357477 : AATCTATACTTCACCATAGACTACTTCGTCGACgacgaaaaatacttttacgTCAAGT : 357534 178 : euIleHisMetAsnAlaAlaLeuPheIleGlyIleLeuSerLeuMetAlaSerAlaTh : 196 !!:!!|||:!! !! ! !!!!! !:!!|||! ! ! !:!!:!:!.!|||! !.. heLeuHisValTyrLeuTyrPheSerLeuGlySerThrValIleLeuGlySerGluVa 357535 : TCTTACATGTGTATCTATATTTTTCCCTCGGAAGTACAGTCATTCTAGGATCAGAAGT : 357591 197 : rLeuMetLeuMetPhePheGlnHisAlaCysGlyMetPheLysIle : 211 ! !! :!!|||||| !.!. !|||! !|||:!:!:!:!!:!! lThrThrIleMetPheAlaAsnPheAlaSerGlyLeuTyrGlnVal 357592 : AACAACTATTATGTTCGCTAATTTTGCGTCTGGGTTATATCAGGTA : 357638 vulgar: CbirOr325PI(F) 157 211 . KQ414693.1 357476 357638 + 106 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 357477 357638 106 + . gene_id 1 ; sequence CbirOr325PI(F) ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 357477 357638 . + . KQ414693.1 exonerate:protein2genome:local exon 357477 357638 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 357477 357638 106 + . alignment_id 1 ; Query CbirOr325PI(F) ; Align 357477 158 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr313PI Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 213 Query range: 174 -> 340 Target range: 357814 -> 358792 175 : SerTyrArgMetGlnArgIleIleAspLysAsnSerLeuAsnLeu<->LeuIleGluL : 193 ||||||||| ::! !:!!.!!..!|||!!. !|||||| ! !! ..!! SerTyrArgAlaArgSerValPheSerLysLysValLeuAsnAlaSerSerThrSerA 357815 : AGTTATCGCGCAAGGTCTGTATTTAGTAAGAAAGTGTTGAATGCCTCAAGCACGTCAA : 357872 194 : ysHisCysAlaLeuTyrLysAsnValValAlaAlaValAspGlyHisArgArgAlaIl : 212 :! !! !!!.!:!!:!!:!!!!.:!!|||! !!.!||| ! !||||||||||||:! rgAspSerValValHisGluLysLeuValGluValValLysMetHisArgArgAlaVa 357873 : GAGATAGTGTAGTGCACGAAAAATTGGTTGAAGTTGTGAAAATGCACAGACGAGCGGT : 357929 213 : e{Gl} >>>> Target Intron 1 >>>> {u}PheSerGluCysIleLysArg : 220 :{!!} 78 bp {:}|||!!!.!. !:!: !..! l{As}++ ++{p}PheCysAsnLeuLeuGlyGlu 357930 : G{GA}gt.........................ag{C}TTTTGCAATCTTTTGGGGGAA : 358031 221 : ThrPheThrIleProTyrLeuAlaLeuIleLeuLeuGlyValThrSerThrSerValA : 240 :!!||| ! ! !!|||!!! !|||:!!||||||||||||.!!!!!||||||:!!| SerPheGlySerSerTyrPheLeuLeuLeuLeuLeuGlyValAlaCysThrSerIleA 358032 : TCCTTTGGATCTTCGTATTTTTTATTGCTCCTGTTAGGAGTGGCGTGTACAAGTATCA : 358091 241 : snLeuPheLeu >>>> Target Intron 2 >>>> LeuPheGlnValIleThr : 249 ||||| ! ! ! 95 bp :!! !|||:!!! !! ! snLeuValHis++ ++ValThrGlnIleLysMet 358092 : ATCTTGTACATgt.........................agGTGACTCAAATAAAAATG : 358213 250 : SerMetThrSerMetAspAspLeuMetArgSerIleValPheValValCysHisLeuI : 269 !! !:!!:!:!!.!. |||!!:! !..!:!: !.!.:!!:!!... !!!! ProArgSerAsnLeuGlnLeuLeuIleLeuGluValSerMetIleLeuAlaCysPheA 358214 : CCACGAAGTAACTTGCAGTTACTGATCCTAGAAGTGTCTATGATTCTCGCGTGCTTCG : 358273 270 : leTyrMetPheLeuThrAsnTyrAlaGlyGlnLysPheIleAspHisAlaValAspVa : 288 |||:!!||||||||||||:!! !||||||! !.!!!!:||| !::! ! ! :! laTyrLeuPheLeuThrAsnHisMetGlyGlnThrIleMetAspSerSerSerLysLe 358274 : CGTACTTGTTTCTGACCAATCACATGGGACAAACGATCATGGACAGTAGCTCGAAACT : 358330 289 : lTyrGlnLys{Il} >>>> Target Intron 3 >>>> {e}CysAsnValArg : 296 ! ! :!!{ } 304 bp { }! !!:! ! !! uLeuGlyGlu{Al}++ ++{a}TyrSerSerGly 358331 : TCTTGGCGAA{GC}gt.........................ag{G}TACAGCTCTGGA : 358658 297 : TrpTyrAsnAlaProLeuArgIleGlnLysHisLeuLeuPheIleMetGlnLysAlaI : 316 ||||||!.!||| !!:!!! ! !|||||| ||||||!:!||||||||| ! :!!| TrpTyrThrAlaSerValProAlaGlnLysThrLeuLeuTyrIleMetGlnHisSerI 358659 : TGGTATACTGCATCAGTGCCTGCACAAAAAACACTGTTATACATCATGCAACACTCCA : 358718 317 : leLysSerTyrCysMetAspValGlyGlyLeuTyrAsnProSerLeuGlnGlyPheTh : 335 ||:!!..!||| !.!....:!!|||||||||!:! ||||||! !|||||||||:! leGlnAspTyrAsnPheSerIleGlyGlyLeuPheValProSerTyrGlnGlyPheSe 358719 : TACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGTGCCGAGTTACCAAGGATTTTC : 358775 336 : rThrLeuAlaSerAla : 340 !|||:!!.!!..!:!! rThrValThrAspSer 358776 : TACGGTAACAGATTCT : 358792 vulgar: CbirOr313PI 174 340 . KQ414693.1 357814 358792 + 213 M 15 45 G 0 3 M 23 69 S 0 2 5 0 2 I 0 74 3 0 2 S 1 1 M 30 90 5 0 2 I 0 91 3 0 2 M 48 144 S 0 2 5 0 2 I 0 300 3 0 2 S 1 1 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 357815 358792 213 + . gene_id 1 ; sequence CbirOr313PI ; gene_orientation + KQ414693.1 exonerate:protein2genome:local cds 357815 357933 . + . KQ414693.1 exonerate:protein2genome:local exon 357815 357933 . + . insertions 3 ; deletions 0 KQ414693.1 exonerate:protein2genome:local splice5 357934 357935 . + . intron_id 1 ; splice_site "GT" KQ414693.1 exonerate:protein2genome:local intron 357934 358011 . + . intron_id 1 KQ414693.1 exonerate:protein2genome:local splice3 358010 358011 . + . intron_id 0 ; splice_site "AG" KQ414693.1 exonerate:protein2genome:local cds 358012 358102 . + . KQ414693.1 exonerate:protein2genome:local exon 358012 358102 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local splice5 358103 358104 . + . intron_id 2 ; splice_site "GT" KQ414693.1 exonerate:protein2genome:local intron 358103 358197 . + . intron_id 2 KQ414693.1 exonerate:protein2genome:local splice3 358196 358197 . + . intron_id 1 ; splice_site "AG" KQ414693.1 exonerate:protein2genome:local cds 358198 358343 . + . KQ414693.1 exonerate:protein2genome:local exon 358198 358343 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local splice5 358344 358345 . + . intron_id 3 ; splice_site "GT" KQ414693.1 exonerate:protein2genome:local intron 358344 358647 . + . intron_id 3 KQ414693.1 exonerate:protein2genome:local splice3 358646 358647 . + . intron_id 2 ; splice_site "AG" KQ414693.1 exonerate:protein2genome:local cds 358648 358792 . + . KQ414693.1 exonerate:protein2genome:local exon 358648 358792 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 357815 358792 213 + . alignment_id 1 ; Query CbirOr313PI ; Align 357815 175 45 ; Align 357863 190 69 ; Align 358013 214 90 ; Align 358198 244 144 ; Align 358649 293 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr329INT Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 250 -> 296 Target range: 358639 -> 358777 251 : LeuAlaAlaTyrAsnIleGlnTrpTyrLeuAsnProValArgIleGlnLysLeuIleL : 270 ||| ! !|||!:! ! !|||||| ! !!|||! ! !|||||| !:!:| LeuTyrArgTyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuL 358640 : CTTTATAGGTACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGT : 358697 271 : euPheLeuLeuGlnArgGlyIleThrAspPheAsnValThrIleGlyArgLeuPheIl : 289 ||!:!:!!:!!|||!.!..!||| !|||!:!||| !!:!!|||||| !!||||||:! euTyrIleMetGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheVa 358698 : TATACATCATGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGT : 358754 290 : eProSerPheGluCysPheAla : 296 :||||||!:!:!! ! |||:!! lProSerTyrGlnGlyPheSer 358755 : GCCGAGTTACCAAGGATTTTCT : 358777 vulgar: CbirOr329INT 250 296 . KQ414693.1 358639 358777 + 106 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358640 358777 106 + . gene_id 1 ; sequence CbirOr329INT ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 358640 358777 . + . KQ414693.1 exonerate:protein2genome:local exon 358640 358777 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358640 358777 106 + . alignment_id 1 ; Query CbirOr329INT ; Align 358640 251 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr317NTE Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 208 -> 266 Target range: 358648 -> 358896 209 : TyrAsnValGlnTrpTyrThrAlaProLeuLysAlaGlnLysLeuLeuLeuTyrLeuM : 228 |||!:! ! !|||||||||||| !!:!! ||||||||| !|||||||||:!!| TyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuLeuTyrIleM 358649 : TACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGTTATACATCA : 358706 229 : etGlnArgThrMetArgHisCysThrIleValIleGlyGlyLeuPheValThrSerLe : 247 |||||!.!:!!!!:!:! !!! !!.!.!! !|||||||||||||||||| !!|||! etGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheValProSerTy 358707 : TGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGTGCCGAGTTA : 358763 248 : uGlnGlyPheAlaSer >>>> Target Intron 1 >>>> LeuThrAsnMetS : 257 !|||||||||:!!!!! 74 bp ||||||!..|||| rGlnGlyPheSerThr++ ++LeuThrArgMetS 358764 : CCAAGGATTTTCTACGgt.........................agttGACCAGAATGT : 358867 258 : erValSerTyrPheMetValIleSerSer : 266 || !!|||||||||||||||!!: !!||| erPheSerTyrPheMetValMetArgSer 358868 : CGTTCAGCTATTTTATGGTCATGCGTTCt : 358896 vulgar: CbirOr317NTE 208 266 . KQ414693.1 358648 358896 + 154 M 44 132 5 0 2 I 0 70 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358649 358896 154 + . gene_id 1 ; sequence CbirOr317NTE ; gene_orientation + KQ414693.1 exonerate:protein2genome:local cds 358649 358780 . + . KQ414693.1 exonerate:protein2genome:local exon 358649 358780 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local splice5 358781 358782 . + . intron_id 1 ; splice_site "GT" KQ414693.1 exonerate:protein2genome:local intron 358781 358854 . + . intron_id 1 KQ414693.1 exonerate:protein2genome:local splice3 358853 358854 . + . intron_id 0 ; splice_site "ag" KQ414693.1 exonerate:protein2genome:local cds 358855 358896 . + . KQ414693.1 exonerate:protein2genome:local exon 358855 358896 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358649 358896 154 + . alignment_id 1 ; Query CbirOr317NTE ; Align 358649 209 132 ; Align 358855 253 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 332 -> 390 Target range: 358648 -> 358896 333 : TyrMetSerGlnTrpTyrAsnGlyProLeuHisAlaGlnLysLeuLeuLeuPheIleM : 352 |||! ||| !||||||!.!!.! !!:!!! !||||||||| !||||||!:!|||| TyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuLeuTyrIleM 358649 : TACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGTTATACATCA : 358706 353 : etGlnArgSerMetLysSerThrValMetCysLeuGlyAsnLeuPheValProSerLe : 371 |||||!.!|||!!::!!..! ! !.!.! :!!|||..!|||||||||||||||! etGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheValProSerTy 358707 : TGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGTGCCGAGTTA : 358763 372 : uGluGlyPheAlaThr >>>> Target Intron 1 >>>> IleThrSerMetS : 381 !:!!||||||:!!||| 74 bp :::|||!!!|||| rGlnGlyPheSerThr++ ++LeuThrArgMetS 358764 : CCAAGGATTTTCTACGgt.........................agttGACCAGAATGT : 358867 382 : erPheSerTyrPheThrValIleHisSer : 390 ||||||||||||||! !|||!!:!.!||| erPheSerTyrPheMetValMetArgSer 358868 : CGTTCAGCTATTTTATGGTCATGCGTTCt : 358896 vulgar: CbirOr320 332 390 . KQ414693.1 358648 358896 + 148 M 44 132 5 0 2 I 0 70 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358649 358896 148 + . gene_id 1 ; sequence CbirOr320 ; gene_orientation + KQ414693.1 exonerate:protein2genome:local cds 358649 358780 . + . KQ414693.1 exonerate:protein2genome:local exon 358649 358780 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local splice5 358781 358782 . + . intron_id 1 ; splice_site "GT" KQ414693.1 exonerate:protein2genome:local intron 358781 358854 . + . intron_id 1 KQ414693.1 exonerate:protein2genome:local splice3 358853 358854 . + . intron_id 0 ; splice_site "ag" KQ414693.1 exonerate:protein2genome:local cds 358855 358896 . + . KQ414693.1 exonerate:protein2genome:local exon 358855 358896 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358649 358896 148 + . alignment_id 1 ; Query CbirOr320 ; Align 358649 333 132 ; Align 358855 377 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr322 Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 333 -> 377 Target range: 358651 -> 358783 334 : AsnAlaGlnTrpTyrThrAlaProLeuHisSerGlnLysLeuLeuLeuMetValLeuA : 353 !:!:!! !|||||||||||| !!:!!! !:!!|||||| !|||||| :!!:!!! SerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuLeuTyrIleMetG 358652 : AGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGTTATACATCATGC : 358709 354 : rgArgSerMetLysSerThrAlaIleIleValGlyGlyLeuPheIleProSerLeuGl : 372 :!!.!|||!!::!!..! ! !.!! :!!||||||||||||:!:||||||! !:! lnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheValProSerTyrGl 358710 : AACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGTGCCGAGTTACCA : 358766 373 : uGlyPheAlaThrLeu : 377 !||||||:!!|||:!! nGlyPheSerThrVal 358767 : AGGATTTTCTACGGTA : 358783 vulgar: CbirOr322 333 377 . KQ414693.1 358651 358783 + 107 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358652 358783 107 + . gene_id 1 ; sequence CbirOr322 ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 358652 358783 . + . KQ414693.1 exonerate:protein2genome:local exon 358652 358783 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358652 358783 107 + . alignment_id 1 ; Query CbirOr322 ; Align 358652 334 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr316 Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 335 -> 393 Target range: 358648 -> 358896 336 : TyrAsnAlaGlnTrpTyrValAlaProValLysValGlnLysLeuLeuTrpLeuValM : 355 |||!:!:!! !||||||..!||| !!||| !.!|||||| !|||! ! !:!!| TyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuLeuTyrIleM 358649 : TACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGTTATACATCA : 358706 356 : etGlnArgSerLeuArgHisCysThrAsnValValGlyGlyLeuPheValProSerLe : 374 |||||!.!|||:!!!:! !!! !!.! ! !:!!|||||||||||||||||||||! etGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheValProSerTy 358707 : TGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGTGCCGAGTTA : 358763 375 : uGluGlyPheAlaSer >>>> Target Intron 1 >>>> IleThrGlyAlaS : 384 !:!!||||||:!!!!! 74 bp :::||| !! !| rGlnGlyPheSerThr++ ++LeuThrArgMetS 358764 : CCAAGGATTTTCTACGgt.........................agttGACCAGAATGT : 358867 385 : erIleSerTyrPheMetValIleTyrSer : 393 ||.!!|||||||||||||||!!: !||| erPheSerTyrPheMetValMetArgSer 358868 : CGTTCAGCTATTTTATGGTCATGCGTTCt : 358896 vulgar: CbirOr316 335 393 . KQ414693.1 358648 358896 + 133 M 44 132 5 0 2 I 0 70 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358649 358896 133 + . gene_id 1 ; sequence CbirOr316 ; gene_orientation + KQ414693.1 exonerate:protein2genome:local cds 358649 358780 . + . KQ414693.1 exonerate:protein2genome:local exon 358649 358780 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local splice5 358781 358782 . + . intron_id 1 ; splice_site "GT" KQ414693.1 exonerate:protein2genome:local intron 358781 358854 . + . intron_id 1 KQ414693.1 exonerate:protein2genome:local splice3 358853 358854 . + . intron_id 0 ; splice_site "ag" KQ414693.1 exonerate:protein2genome:local cds 358855 358896 . + . KQ414693.1 exonerate:protein2genome:local exon 358855 358896 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358649 358896 133 + . alignment_id 1 ; Query CbirOr316 ; Align 358649 336 132 ; Align 358855 380 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr334 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 331 -> 390 Target range: 1395344 -> 1395908 332 : AlaTyrAsnSerGlnTrpTyrIleAlaProLeuArgValGlnGlyLeuIleLeuPh : 350 ||||||!:!|||! ||||||:!! ! !! !!:!! !::! !:!!|||:!!.! AlaTyrSerSerProTrpTyrLeuLeuAspProGlnAspArgHisIleIleIleLe 1395345 : GCATATAGCTCACCTTGGTACCTTCTGGATCCTCAAGACAGACATATCATTATTCT : 1395399 351 : eLeuLeuGluArgGlySerThrGluPheLysLeuAsnValGlyGlyLeuTyrAsnA : 369 !|||:!! !|||..!..!! !..!!!.! !:!!!.!!.!||| !!!! :!! uLeuMetIleArgSerGlnArgArgLeuThrIleThrAlaGlyLysPheMetAspL 1395400 : TCTCATGATAAGATCTCAAAGACGATTAACAATCACCGCTGGAAAATTTATGGACT : 1395456 370 : laSerLeuGluGlyPheAlaMet >>>> Target Intron 1 >>>> LeuV : 378 !||||||||||||||||||! 387 bp :::: euSerLeuGluGlyPheAlaAsn++ ++IleL 1395457 : TGTCTTTAGAAGGTTTTGCAAATgt.........................agatcT : 1395870 379 : alLysAlaSerValSerTyrPheThrValIleTyrSer : 390 !!|||||||||!.!||||||.!.:!!|||:!:|||:!! euLysAlaSerAlaSerTyrIleSerValLeuTyrAla 1395871 : TAAAGGCTTCTGCATCGTACATATCTGTACTGTATGCG : 1395908 vulgar: CbirOr334 331 390 . KQ414716.1 1395344 1395908 + 100 M 45 135 5 0 2 I 0 383 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395345 1395908 100 + . gene_id 1 ; sequence CbirOr334 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1395345 1395479 . + . KQ414716.1 exonerate:protein2genome:local exon 1395345 1395479 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1395480 1395481 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1395480 1395866 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1395865 1395866 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1395867 1395908 . + . KQ414716.1 exonerate:protein2genome:local exon 1395867 1395908 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395345 1395908 100 + . alignment_id 1 ; Query CbirOr334 ; Align 1395345 332 135 ; Align 1395867 377 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr317NTE Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 38 -> 167 Target range: 887621 -> 888204 39 : ThrGluTyrPheIleAspGlnGlnLysTyrPhePheLeuIleLeuPheHisIleSerP : 58 ..!|||||| !||||||...:::|||||||||:::|||||| ! !||| !! ! ValGluTyrHisIleAspSerGluLysTyrPheTyrLeuIleThrAlaHisCysTyrA 887622 : GTGGAGTACCACATCgacagtgaaaaatatttttacctgATTACAGCTCATTGTTACG : 887679 59 : hePheValTrpCysGlyLeuAlaValValAlaAlaThrGluSerPheTyrMetSerLe : 77 !! ..! ! !||| ! !..!!.!!.! !!!:!!!.!.|||!!: !|| laSerThrValLeuLeuLeuLeuGlnThrValValHisAspThrMetTyrIleValLe 887680 : CCTCGACAGTACTTCTTCTGCTTCAAACTGTCGTACACGACACAATGTACATTGTTCT : 887736 78 : uIleGlnHisAlaCysGlyLeuPheGlnIleAlaSerTyrArgIleGluGlnAlaLeu : 96 |:!!||||||!.!|||!.!|||||| !:!!.!!.!! !:!:!: ! ! !!! ! uValGlnHisGlyCysAlaLeuPheAlaValThrGly---GlnValTyrTyrProTyr 887737 : GGTCCAACATGGCTGCGCTTTATTCGCAGTTACGGGG---CAAGTGTATTACCCCTAT : 887790 97 : HisLysAspLeuValArgAsnValThrSerIleValGluArgAsn >>>> Target : 112 |||...!!:||| !|||:!!:!!! !! !! !:!! ! !.!. 1 HisSerGluLeuSerArgHisLeuIleTyrThrLeuPheProGln-+ 887791 : CATTCTGAATTGTCCAGACATTTAATTTACACACTATTTCCACAGat........... : 887840 113 : Intron 1 >>>> ThrIleIleAsnArgLysLeuIleSerGlyIleAsnMetHis : 125 00 bp ||| :::::!|||:!! !||||||!!. ||| ++LysLysIleTyrGlnArgLeuValLeuGlyIleLysGluHis 887841 : ..............agaagaaaatttatcagaGACTCGTTCTTGGTATCAAGGAACAC : 887977 126 : LysArgAlaIle{Gl} >>>> Target Intron 2 >>>> {u}PheValGluM : 134 ||||||||||||{||} 99 bp {|}!:!..!:!!: LysArgAlaIle{Gl}++ ++{u}TyrThrLysL 887978 : AAAAGAGCTATA{GA}gt.........................ag{G}TACACGAAAC : 888103 135 : etSerLysAlaSerTyrLysTrpThrTyrValMetLeuGlyProLeuGlyValValSe : 153 !: ! ! ||| !!:!... !! !!!!::!! ! !|||..!:!!:!!|| euLeuHisAlaValPheSerGluCysLeuPheIleValLeuMetLeuAsnIleIleSe 888104 : TTCTTCATGCAGTATTCTCTGAATGTTTGTTCATTGTACTCATGTTAAATATCATCAG : 888160 154 : rLeuSerIleAsnLeuTyrArgLeuSerLeuLeuIleThrIle : 167 ||||||||||||| ! !!:!:!!! !:!!:::::: ::: rLeuSerIleAsnGlyValGlnValIleIleValValLysLeu 888161 : CTTGAGCATCAACGGGGTTCAAGTAATTATAgtcgtaaaatta : 888204 vulgar: CbirOr317NTE 38 167 . KQ414735.1 887621 888204 + 120 M 51 153 G 1 0 M 21 63 5 0 2 I 0 96 3 0 2 M 18 54 S 0 2 5 0 2 I 0 95 3 0 2 S 1 1 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 887622 888204 120 + . gene_id 1 ; sequence CbirOr317NTE ; gene_orientation + KQ414735.1 exonerate:protein2genome:local cds 887622 887837 . + . KQ414735.1 exonerate:protein2genome:local exon 887622 887837 . + . insertions 0 ; deletions 1 KQ414735.1 exonerate:protein2genome:local splice5 887838 887839 . + . intron_id 1 ; splice_site "AT" KQ414735.1 exonerate:protein2genome:local intron 887838 887937 . + . intron_id 1 KQ414735.1 exonerate:protein2genome:local splice3 887936 887937 . + . intron_id 0 ; splice_site "ag" KQ414735.1 exonerate:protein2genome:local cds 887938 887993 . + . KQ414735.1 exonerate:protein2genome:local exon 887938 887993 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local splice5 887994 887995 . + . intron_id 2 ; splice_site "GT" KQ414735.1 exonerate:protein2genome:local intron 887994 888092 . + . intron_id 2 KQ414735.1 exonerate:protein2genome:local splice3 888091 888092 . + . intron_id 1 ; splice_site "AG" KQ414735.1 exonerate:protein2genome:local cds 888093 888204 . + . KQ414735.1 exonerate:protein2genome:local exon 888093 888204 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 887622 888204 120 + . alignment_id 1 ; Query CbirOr317NTE ; Align 887622 39 153 ; Align 887775 91 63 ; Align 887938 112 54 ; Align 888094 131 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr326 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 166 -> 214 Target range: 17949 -> 17805 167 : TyrPheLeuAspGlnGluLysTyrLeuTyrPheIleLeuLeuHisIleSerLeuAlaIle : 186 ||||||:!!|||:!!! !:!!|||! !|||!:!|||:!!|||||| !!!!! !.!!||| TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIle 17949 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATT : 17892 187 : SerIleAlaValAlaValLeuIleAlaIleGlyThrMetPheIleAlaTyrLeuGlnHis : 206 ! !|||!.!|||!.!|||! ! !||| !! !|||! !:!!!:!.! :!!|||||| LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 17891 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 17832 207 : ThrCysGlyMetPheArgIleAla : 214 |||||||||:!!||| !:!:||| ThrCysGlyLeuPheAlaValAla 17831 : ACTTGCGGACTGTTCGCCGTGGCC : 17806 vulgar: CbirOr326 166 214 . KQ414772.1 17949 17805 - 120 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17806 17949 120 - . gene_id 1 ; sequence CbirOr326 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17806 17949 . - . KQ414772.1 exonerate:protein2genome:local exon 17806 17949 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17806 17949 120 - . alignment_id 1 ; Query CbirOr326 ; Align 17950 167 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr314 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 120 -> 205 Target range: 45988 -> 45733 121 : IleLeuThrMetSerIleLeuIleLeuPheTyrIleAlaIlePheGlyPheIleMetMet : 140 :!!|||:!!!!: ! !! !:!! !.!.||||||!.!:!:! !! !||| !! ! ValLeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThrAla 45988 : GTTTTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCG : 45931 141 : GluValLeuProLysIleLeuAspIleValValProLeuAsnGluSerArgProValHis : 160 :!!:!!||| |||||||||:!!:!! !||||||||||||||||||||| ! ProLeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArgLeu 45930 : CCCCTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTG : 45871 161 : LeuLeuGlyValAlaThrLeuPhePheAspGluGluLysTyrPhePheProIleLeuGly : 180 ! ! ! ! !||| !! !!:!|||:!! !!!: ! |||!:!!:! !:!!:!!||| TyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValValGly 45870 : TACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTGGGG : 45811 181 : HisMetThrValAlaLeuLeuSerGluThrThrThrIleIleAlaThrGluThrValGly : 200 :!!! !:!!.!..!:!! !! !! ! !..!:!!:!!!.!.!!!!:! !:!! ! TyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAlaAspIleIleMet 45810 : TACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATTATG : 45751 201 : LeuIleLeuIleGln : 205 :!! !|||:!!!:: IleHisLeuValArg 45750 : ATACATCTTGTACGT : 45734 vulgar: CbirOr314 120 205 . KQ414772.1 45988 45733 - 105 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45734 45988 105 - . gene_id 1 ; sequence CbirOr314 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45734 45988 . - . KQ414772.1 exonerate:protein2genome:local exon 45734 45988 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45734 45988 105 - . alignment_id 1 ; Query CbirOr314 ; Align 45989 121 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr314 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 130 -> 214 Target range: 18057 -> 17805 131 : TyrIleAlaIlePheGlyPheIleMetMetGluValLeuProLysIleLeuAspIleVal : 150 ||||||..! ||| !||||||...:!! ! !! ! !!::!:!::!!:!! ! TyrIleCysSerPheLeuPheIleGlnValProTrpSerThrArgLeuValAsnSerTyr 18057 : TACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCGTAC : 18000 151 : ValProLeuAsnGluSerArgProValHisLeuLeuGlyValAlaThrLeuPhePheAsp : 170 ! !!! !||| !!!!! ! !:!!!!.!!!:!! ! !!.! !! !||| !!||| LysThrGlnAsnIleThrProSerLeuGlnPheValIleProGlyTyrTyrPheValAsp 17999 : AAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGAC : 17940 171 : GluGluLysTyrPhePheProIleLeuGlyHisMetThrValAlaLeuLeuSerGluThr : 190 |||! !:!!|||!:!!:! !|||:!! !||| ||| !.!!:!!|||! !! !..! GluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIleLeuIleValVal 17939 : GAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTG : 17880 191 : ThrThrIleIleAlaThrGluThrValGlyLeuIleLeuIleGlnHisLeuCysGlyLeu : 210 ..!..! ! !||| !!!:||| ! !:!!:!!|||:!:|||||| !||||||||| ValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeu 17879 : GTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTG : 17820 211 : PheLysIleAla : 214 ||| :!:||| PheAlaValAla 17819 : TTCGCCGTGGCC : 17806 vulgar: CbirOr314 130 214 . KQ414772.1 18057 17805 - 103 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17806 18057 103 - . gene_id 2 ; sequence CbirOr314 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17806 18057 . - . KQ414772.1 exonerate:protein2genome:local exon 17806 18057 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17806 18057 103 - . alignment_id 2 ; Query CbirOr314 ; Align 18058 131 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr322 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 136 -> 210 Target range: 20556 -> 20334 137 : PheIleLeuThrMetPheValProAspValLeuAspIleIleThrProLeuAspGluPro : 156 |||:!!! !..! |||!.!||| !:!!||||||||| !.!!||||||:!!:!! !! PheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsnLysThr 20556 : TTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAACAAAACG : 20499 157 : ArgProArgGlnLeuProValGlnIleGluPhePhePheAspGlnAspArgTyrPheTyr : 176 ||| !||| !!!! ! !! ! ! ! !:!!::.!.|||! !!:!:!|||!:! ArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMet 20498 : AGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATG : 20439 177 : LeuPheSerPheIlePheIleIleValAlaPheLeuGlyMetThrValLeuMetAlaThr : 196 :!!.!.! !.!. !.!.!!:.!!|||!.!.!!:!!! ! ..!:!!!!! ||| ! IleMetIleIleHisIleMetPheValValIleMetValCysValIlePheCysAlaCys 20438 : ATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGTGCTTGC : 20379 197 : GluAsnMetTyrMetLeuPheThrGlnHisAlaCysGlyLeu : 210 !!:! ! |||:!!! ! !..!|||||||||||||||||| AspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeu 20378 : GACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTA : 20335 vulgar: CbirOr322 136 210 . KQ414772.1 20556 20334 - 108 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20335 20556 108 - . gene_id 1 ; sequence CbirOr322 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20335 20556 . - . KQ414772.1 exonerate:protein2genome:local exon 20335 20556 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20335 20556 108 - . alignment_id 1 ; Query CbirOr322 ; Align 20557 137 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr322 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 134 -> 210 Target range: 33655 -> 33427 135 : LeuAlaPheIleLeuThrMetPheValProAspValLeuAspIleIleThrProLeuAsp : 154 :!! !|||! !! !.!! |||:!!||| !! !!:!!|||:!! ! !! !:!! IleMetPheSerSerAlaProPheIleProHisPheIleAspValAlaLeuSerLysAsn 33655 : ATCATGTTCAGCTCGGCGCCTTTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAAC : 33598 155 : GluProArgProArgGlnLeuProValGlnIleGluPhePhePheAspGlnAspArgTyr : 174 ||| !!||| ! !...||| ! !! ! ! !:! !.!!|||||||||:::||| GluSerArgLysLeuSerLeuMetTyrProAlaTyrTyrGlyIleAspGlnAspLysTyr 33597 : GAGTCACGAAAATTAAGTTTGATGTACCCTGCCTATTACGGCATTGACCAGGacaagtat : 33538 175 : PheTyrLeuPheSerPheIlePheIleIleValAlaPheLeuGlyMetThrValLeuMet : 194 :::||| ... ! !.!.!!:! !!.!!.! !! !.!. !|||!!!||| TyrTyrTyrLeuMetAlaHisMetMetSerAlaGlyAlaAlaValPhePheValPheMet 33537 : tattattatctaatgGCTCACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATG : 33478 195 : AlaThrGluAsnMetTyrMetLeuPheThrGlnHisAlaCysGlyLeu : 210 :!! !!!:!..!!:|||||| !.!!..!|||||||||||||||||| SerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeu 33477 : TCCTGCGACACGATTTATATGAATATCGTTCAACACGCGTGCGGATTG : 33428 vulgar: CbirOr322 134 210 . KQ414772.1 33655 33427 - 102 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33428 33655 102 - . gene_id 2 ; sequence CbirOr322 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33428 33655 . - . KQ414772.1 exonerate:protein2genome:local exon 33428 33655 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 33428 33655 102 - . alignment_id 2 ; Query CbirOr322 ; Align 33656 135 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr316 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 147 -> 215 Target range: 37976 -> 37772 148 : LeuAspPheThrThrAlaAlaAsnGluSerArgIleArgGluPheProAlaLeuIleGlu : 167 ||||||.!!! !:!! !! !|||||||||||| !!!:||| ! !! ! ! ! LeuAspLeuIleSerProLysAsnGluSerArgGlyValAspPheIleTyrProAlaTyr 37976 : CTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTCATTTATCCTGCATAC : 37919 168 : CysPheIleAspHisGlnLysTyrPheTyrProIleLeuSerTyrMetPheLeuValIle : 187 ! ! !:!!|||.!.:!!:!!:!!!:!||| !:!::!!.!!:!!|||.!!! !|||||| TyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHisMetLeuCysValIle 37918 : TACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCACATGCTCTGCGTGATA : 37859 188 : ValCysGlyGlnThrThrMetIleAlaThrGluThrLeuTyrMetThrTyrThrGlnHis : 207 ..! ! ! !..! |||:!! !!!:|||:!!||||||!:! !..!|||||| ThrValValPhePheValTyrIleSerCysAspThrIleTyrMetSerIleValGlnHis 37858 : ACTGTAGTGTTTTTCGTGTACATCTCCTGTGACACGATCTACATGAGCATCGTTCAACAC : 37799 208 : AlaCysGlyLeuPheGluIleAla : 215 ||||||||||||.!..!.:!!:!! AlaCysGlyLeuLeuAsnValSer 37798 : GCGTGCGGATTACTGAACGTCTCT : 37773 vulgar: CbirOr316 147 215 . KQ414772.1 37976 37772 - 106 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37773 37976 106 - . gene_id 1 ; sequence CbirOr316 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37773 37976 . - . KQ414772.1 exonerate:protein2genome:local exon 37773 37976 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 37773 37976 106 - . alignment_id 1 ; Query CbirOr316 ; Align 37977 148 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr316 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 147 -> 215 Target range: 24383 -> 24179 148 : LeuAspPheThrThrAlaAlaAsnGluSerArgIleArgGluPheProAlaLeuIleGlu : 167 ||||||.!!! !:!! !! !|||||||||||| ! !! ||| ! !! ! !.!. LeuAspLeuIleSerProLysAsnGluSerArgGlyValGlyPheIleTyrProAlaAsn 24383 : CTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAAC : 24326 168 : CysPheIleAspHisGlnLysTyrPheTyrProIleLeuSerTyrMetPheLeuValIle : 187 ! ! !:!!|||.!.:!!:!!:!!!:!||| !:!::!!.!!:!!|||.!!! !|||||| TyrGlyValAspGluGluGluHisTyrTyrTyrLeuMetGlyHisMetLeuSerValIle 24325 : TACGGCGTCGACGAAGAGGAGCATTACTACTATCTGATGGGTCACATGCTTTCCGTGATA : 24266 188 : ValCysGlyGlnThrThrMetIleAlaThrGluThrLeuTyrMetThrTyrThrGlnHis : 207 ..! !! ! !..! |||:!! !!!:|||:!!||||||!.! !..!|||||| ThrValValPhePheValTyrIleSerCysAspThrIleTyrMetAsnIleValGlnHis 24265 : ACTGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCAACAC : 24206 208 : AlaCysGlyLeuPheGluIleAla : 215 ||||||||||||!!..!.:!!:!! AlaCysGlyLeuLeuAsnLeuSer 24205 : GCGTGTGGATTATTGAACCTCTCT : 24180 vulgar: CbirOr316 147 215 . KQ414772.1 24383 24179 - 102 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24180 24383 102 - . gene_id 2 ; sequence CbirOr316 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24180 24383 . - . KQ414772.1 exonerate:protein2genome:local exon 24180 24383 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 24180 24383 102 - . alignment_id 2 ; Query CbirOr316 ; Align 24384 148 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr316 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 147 -> 215 Target range: 29562 -> 29358 148 : LeuAspPheThrThrAlaAlaAsnGluSerArgIleArgGluPheProAlaLeuIleGlu : 167 ||||||.!!! !:!! !! !|||||||||||| ! !! ||| ! !! ! ! ! LeuAspLeuIleSerProLysAsnGluSerArgGlyValGlyPheIleTyrProAlaTyr 29562 : CTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTGGGCTTCATTTATCCTGCATAC : 29505 168 : CysPheIleAspHisGlnLysTyrPheTyrProIleLeuSerTyrMetPheLeuValIle : 187 ! ! !:!!|||.!.:!!:!!:!!!:!||| !:!::!!.!!:!!|||.!!! !|||||| TyrGlyLeuAspGluGluGluHisTyrTyrTyrLeuMetGlyHisMetLeuSerValIle 29504 : TACGGTCTTGACGAAGAGGAGCATTACTACTATCTGATGGGTCACATGCTTTCCGTGATA : 29445 188 : ValCysGlyGlnThrThrMetIleAlaThrGluThrLeuTyrMetThrTyrThrGlnHis : 207 ..! !! ! !..! |||:!! !!!:|||:!!||||||!.! !..!|||||| ThrValValPhePheValTyrIleSerCysAspThrIleTyrMetAsnValValGlnHis 29444 : ACCGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATCTATATGAATGTCGTGCAACAC : 29385 208 : AlaCysGlyLeuPheGluIleAla : 215 ||||||||||||!!..!.:!!:!! AlaCysGlyLeuLeuAsnValSer 29384 : GCGTGTGGATTATTGAACGTCTCT : 29359 vulgar: CbirOr316 147 215 . KQ414772.1 29562 29358 - 100 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29359 29562 100 - . gene_id 3 ; sequence CbirOr316 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29359 29562 . - . KQ414772.1 exonerate:protein2genome:local exon 29359 29562 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 29359 29562 100 - . alignment_id 3 ; Query CbirOr316 ; Align 29563 148 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr325PI(F) Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 70 -> 212 Target range: 29981 -> 29358 71 : PheLeuSerIleLeuThrIleTyrTyrThrSerPheArgPheAsnIleLysThrValLys : 90 |||||||||:::||||||...||| ..!..!.!.!.! !!..! ! ! !:!!||| PheLeuSerValLeuThrPheTyrLeuValGlnMetAsnAspThrLysLeuGlnLeuLys 29981 : TTTCTCTCTGtacttacattttatttggTACAAATGAACGATACGAAATTACAGCTAAAG : 29924 91 : AspLeuMetGluGlnLeuHisCysAlaCysThrLysLeuArgGluGlnLysGluIleAla : 110 !!::!!!!:||| ||| ! !! !!! ..!! ! !||| :::...|||||| GluMetIleGluCysLeuPheAsnAspTrpValThrThrArgProLysSerGluIleGlu 29923 : GAGATGATAGAGTGCTTATTCAACGATTGGGTAACGACACGGCcgaaaagtgaaattgaa : 29864 111 : IleIleGlnGluTyrGlyArgThrAlaAsnArgValThrAla{Al} >>>> Target : 125 |||:::.!.:!!|||!.!|||! !!.! ! !!!.! !{ } 19 IleMetAspLysTyrAlaArgArgGlyLeuPhePheAsnArg{Le}++ 29863 : attatggACAAGTATGCGAGAAGAGGCCTGTTTTTCAATCGT{TT}gt............ : 29815 126 : Intron 1 >>>> {a}LeuLeuPheGlyIleIleLysProAlaPheTrpAlaIleGln : 139 7 bp {!} ! ! !.!! ! ! ! !||| :!!:!: ! +-{u}AlaAsnGlyIlePheCysTyrValIlePheThrSerValAla 29814 : .............ac{A}GCAAATGGAATCTTCTGCTACGTTATATTCACCTCAGTGGCG : 29580 140 : IleAlaIleProTyrLeuAspAsnValThrProIleAsnGlyCysArgProHisArgLeu : 159 |||.!! !! ! !|||||| !:!!:!!|||! !|||! !! ||| ! !!!!! IleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValGlyPhe 29579 : ATAACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTGGGCTTC : 29520 160 : TyrIleAlaValGluTyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHis : 179 ! ! !!!.! ! ||| !:!!|||:!!|||:!!:!!|||||| !:!::!! !||| IleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrTyrLeuMetGlyHis 29519 : ATTTATCCTGCATACTACGGTCTTGACGAAGAGGAGCATTACTACTATCTGATGGGTCAC : 29460 180 : MetAsnAlaAlaLeuPheIleGlyIleLeuSerLeuMetAlaSerAlaThrLeuMetLeu : 199 ||| !:!!!.!:!! !:!!! !.!!!!! !! !!!::!!!!!! !|||:!! :!! MetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMet 29459 : ATGCTTTCCGTGATAACCGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATCTATATG : 29400 200 : MetPhePheGlnHisAlaCysGlyMetPheLysIleAla : 212 ! !! ! |||||||||||||||:!:!!.!!.:!!:!! AsnValValGlnHisAlaCysGlyLeuLeuAsnValSer 29399 : AATGTCGTGCAACACGCGTGTGGATTATTGAACGTCTCT : 29359 vulgar: CbirOr325PI(F) 70 212 . KQ414772.1 29981 29358 - 111 M 54 162 S 0 2 5 0 2 I 0 193 3 0 2 S 1 1 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29359 29981 111 - . gene_id 1 ; sequence CbirOr325PI(F) ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 29818 29981 . - . KQ414772.1 exonerate:protein2genome:local exon 29818 29981 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 29816 29817 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 29621 29817 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 29621 29622 . - . intron_id 0 ; splice_site "AC" KQ414772.1 exonerate:protein2genome:local cds 29359 29620 . - . KQ414772.1 exonerate:protein2genome:local exon 29359 29620 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 29359 29981 111 - . alignment_id 1 ; Query CbirOr325PI(F) ; Align 29982 71 162 ; Align 29620 126 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr325PI(F) Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 134 -> 212 Target range: 24413 -> 24179 135 : PheTrpAlaIleGlnIleAlaIleProTyrLeuAspAsnValThrProIleAsnGlyCys : 154 ||| |||:!: !|||.!! !! ! !|||||| !:!!:!!|||! !|||! !! PheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSer 24413 : TTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCG : 24356 155 : ArgProHisArgLeuTyrIleAlaValGluTyrPheIleAspGlnGluLysTyrTyrTyr : 174 ||| ! !!!!! ! ! !!!.!.!.||| !:!!|||:!!|||:!!:!!|||||| ArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyrTyr 24355 : CGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTACTAC : 24296 175 : ValIleLeuIleHisMetAsnAlaAlaLeuPheIleGlyIleLeuSerLeuMetAlaSer : 194 !:!::!! !|||||| !:!!!.!:!! !:!!! !.!!!!! !! !!!::!!!!! TyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIleSerCys 24295 : TATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGT : 24236 195 : AlaThrLeuMetLeuMetPhePheGlnHisAlaCysGlyMetPheLysIleAla : 212 ! !|||:!! :!!! .!! ! |||||||||||||||:!:!!.!!.:!!:!! AspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSer 24235 : GACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCT : 24180 vulgar: CbirOr325PI(F) 134 212 . KQ414772.1 24413 24179 - 106 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24180 24413 106 - . gene_id 2 ; sequence CbirOr325PI(F) ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24180 24413 . - . KQ414772.1 exonerate:protein2genome:local exon 24180 24413 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 24180 24413 106 - . alignment_id 2 ; Query CbirOr325PI(F) ; Align 24414 135 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr325PI(F) Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 164 -> 212 Target range: 17949 -> 17805 165 : TyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnAlaAlaLeu : 184 ||||||:!!|||:!!! !:!!||||||||| !|||:!!:!!||| !....!.!!:!! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIle 17949 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATT : 17892 185 : PheIleGlyIleLeuSerLeuMetAlaSerAlaThrLeuMetLeuMetPhePheGlnHis : 204 !!.|||! !:!::!! !! ! |||!!!! !||| ! :!!:!:.!. ! |||||| LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 17891 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 17832 205 : AlaCysGlyMetPheLysIleAla : 212 .!!||||||:!!||| :!:||| ThrCysGlyLeuPheAlaValAla 17831 : ACTTGCGGACTGTTCGCCGTGGCC : 17806 vulgar: CbirOr325PI(F) 164 212 . KQ414772.1 17949 17805 - 106 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17806 17949 106 - . gene_id 3 ; sequence CbirOr325PI(F) ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17806 17949 . - . KQ414772.1 exonerate:protein2genome:local exon 17806 17949 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17806 17949 106 - . alignment_id 3 ; Query CbirOr325PI(F) ; Align 17950 165 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr325PI(F) Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 134 -> 212 Target range: 38006 -> 37772 135 : PheTrpAlaIleGlnIleAlaIleProTyrLeuAspAsnValThrProIleAsnGlyCys : 154 ||| :!!:!: !|||.!! !! ! !|||||| !:!!:!!|||! !|||! !! PheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSer 38006 : TTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCG : 37949 155 : ArgProHisArgLeuTyrIleAlaValGluTyrPheIleAspGlnGluLysTyrTyrTyr : 174 ||| ! ! !!!! ! ! !!!.! ! ||| !:!!|||:!!|||:!!:!!|||||| ArgGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyr 37948 : CGTGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAGGAACATTATTAC : 37889 175 : ValIleLeuIleHisMetAsnAlaAlaLeuPheIleGlyIleLeuSerLeuMetAlaSer : 194 :!!:!::!! !|||||| !..!!.!:!! !:!!! !.!!!!! !! !!!::!!!!! IleLeuMetGlyHisMetLeuCysValIleThrValValPhePheValTyrIleSerCys 37888 : ATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTGTACATCTCCTGT : 37829 195 : AlaThrLeuMetLeuMetPhePheGlnHisAlaCysGlyMetPheLysIleAla : 212 ! !|||:!! :!!! .!! !!|||||||||||||||:!:.!.!!.:!!:!! AspThrIleTyrMetSerIleValGlnHisAlaCysGlyLeuLeuAsnValSer 37828 : GACACGATCTACATGAGCATCGTTCAACACGCGTGCGGATTACTGAACGTCTCT : 37773 vulgar: CbirOr325PI(F) 134 212 . KQ414772.1 38006 37772 - 105 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37773 38006 105 - . gene_id 4 ; sequence CbirOr325PI(F) ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37773 38006 . - . KQ414772.1 exonerate:protein2genome:local exon 37773 38006 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 37773 38006 105 - . alignment_id 4 ; Query CbirOr325PI(F) ; Align 38007 135 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr325PI(F) Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 164 -> 212 Target range: 42619 -> 42475 165 : TyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnAlaAlaLeu : 184 ||| !:!!||||||!!:|||||||||||| !|||:!! !||||||!..:!!!.! ! TyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAlaHisMetThrSerGlyGly 42619 : TATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCTCACATGACATCTGGGGGC : 42562 185 : PheIleGlyIleLeuSerLeuMetAlaSerAlaThrLeuMetLeuMetPhePheGlnHis : 204 !!.:!:! !.!!!!!!!!!!!!!::!!!!!! !|||:!! :!!! .!! ! |||||| LeuValValPhePheThrPheIleSerCysAspThrIleTyrMetAsnIleValGlnHis 42561 : TTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTACATGAATATCGTGCAACAC : 42502 205 : AlaCysGlyMetPheLysIleAla : 212 |||||||||:!!!!. !|||:!! AlaCysGlyLeuLeuLeuIleSer 42501 : GCGTGCGGATTGTTGTTGATTTCT : 42476 vulgar: CbirOr325PI(F) 164 212 . KQ414772.1 42619 42475 - 102 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42476 42619 102 - . gene_id 5 ; sequence CbirOr325PI(F) ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42476 42619 . - . KQ414772.1 exonerate:protein2genome:local exon 42476 42619 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42476 42619 102 - . alignment_id 5 ; Query CbirOr325PI(F) ; Align 42620 165 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr325PI(F) Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 143 -> 212 Target range: 33622 -> 33415 144 : TyrLeuAspAsnValThrProIleAsnGlyCysArgProHisArgLeuTyrIleAlaVal : 163 !:!:!!||| !!.! ! !!! !|||! !! ||| ! !!!||| ! !!!.! PheIleAspValAlaLeuSerLysAsnGluSerArgLysLeuSerLeuMetTyrProAla 33622 : TTTATCGATGTTGCGTTGTCGAAAAACGAGTCACGAAAATTAAGTTTGATGTACCCTGCC : 33565 164 : GluTyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnAlaAla : 183 ! ||| !|||||||||!::|||||||||||| :::::: !||||||! ::!||| TyrTyrGlyIleAspGlnAspLysTyrTyrTyrTyrLeuMetAlaHisMetMetSerAla 33564 : TATTACGGCATTGACCAGGacaagtattattattatctaatgGCTCACATGATGAGCGCA : 33505 184 : LeuPheIleGlyIleLeuSerLeuMetAlaSerAlaThrLeuMetLeuMetPhePheGln : 203 ! ! !.!!!!! !!!!|||:!!!!!! !|||:!! :!!! .!! !!||| GlyAlaAlaValPhePheValPheMetSerCysAspThrIleTyrMetAsnIleValGln 33504 : GGGGCAGCGGTGTTTTTCGTATTTATGTCCTGCGACACGATTTATATGAATATCGTTCAA : 33445 204 : HisAlaCysGlyMetPheLysIleAla : 212 ||||||||||||:!!!!. |||:!! HisAlaCysGlyLeuLeuPheIleSer 33444 : CACGCGTGCGGATTGTTGTTCATTTCC : 33416 vulgar: CbirOr325PI(F) 143 212 . KQ414772.1 33622 33415 - 102 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33416 33622 102 - . gene_id 6 ; sequence CbirOr325PI(F) ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33416 33622 . - . KQ414772.1 exonerate:protein2genome:local exon 33416 33622 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 33416 33622 102 - . alignment_id 6 ; Query CbirOr325PI(F) ; Align 33623 144 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 137 -> 225 Target range: 24410 -> 24146 138 : ValValIleGlnLeuAlaProAsnPheLeuAspPheValAlaProGlnAsnGluSerArg : 157 ..!!.!:!: !:!!.!!|||..! !!||||||.!!:!!:!!|||:!!|||||||||||| ThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArg 24410 : ACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGC : 24353 158 : LeuHisHisIleProIleThrAlaGluTyrPheValAspGlnGlnLysCysTyrLeuPro : 177 ! !.!! ! ! !!|||.!.||| !||||||:!!:!!:!! !|||! ! ! GlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyrTyrTyr 24352 : GGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTACTACTAT : 24293 178 : IleLeuLeuHisIleAspValIleAlaValValGlyPheThrThrValMetSerThrGlu : 197 :!::!! !|||!!: ! !:!: !..!|||! !||| !..! !!!:||| !!!: LeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIleSerCysAsp 24292 : CTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGTGAC : 24233 198 : SerLeuPheAlaAlaPheValGlnHisAlaIleGlyMetPheAlaIleAlaSerTyrArg : 217 !!!:!!!:! ! !.!!|||||||||||| !|||:!:!!. !:!!:!!.!!!! ! ThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSerGly***Ala 24232 : ACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCTGGGTAAGCA : 24173 218 : IleGluHisAlaPheAspGluVal : 225 ||| .....!!:!......:!! IlePheArgCysTyrSerSerIle 24172 : ATTTTCAGATGTTACTCGAGTATC : 24147 vulgar: CbirOr320 137 225 . KQ414772.1 24410 24146 - 110 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24147 24410 110 - . gene_id 1 ; sequence CbirOr320 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24147 24410 . - . KQ414772.1 exonerate:protein2genome:local exon 24147 24410 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 24147 24410 110 - . alignment_id 1 ; Query CbirOr320 ; Align 24411 138 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 139 -> 214 Target range: 37997 -> 37772 140 : IleGlnLeuAlaProAsnPheLeuAspPheValAlaProGlnAsnGluSerArgLeuHis : 159 :!: !:!!.!!|||..! !!||||||.!!:!!:!!|||:!!|||||||||||| ! ! ValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyVal 37997 : GTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTT : 37940 160 : HisIleProIleThrAlaGluTyrPheValAspGlnGlnLysCysTyrLeuProIleLeu : 179 !!.!! ! ! !!||| ! ||| !:!!|||:!!:!!:!! !|||! ! !:!::!! AspPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMet 37939 : GACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATG : 37880 180 : LeuHisIleAspValIleAlaValValGlyPheThrThrValMetSerThrGluSerLeu : 199 !|||!!: ! !:!: !..!|||! !||| !..! !!!:||| !!!:!!!:!! GlyHisMetLeuCysValIleThrValValPhePheValTyrIleSerCysAspThrIle 37879 : GGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTGTACATCTCCTGTGACACGATC : 37820 200 : PheAlaAlaPheValGlnHisAlaIleGlyMetPheAlaIleAla : 214 !:! !::!.!!|||||||||||| !|||:!:.!. !:!!:!! TyrMetSerIleValGlnHisAlaCysGlyLeuLeuAsnValSer 37819 : TACATGAGCATCGTTCAACACGCGTGCGGATTACTGAACGTCTCT : 37773 vulgar: CbirOr320 139 214 . KQ414772.1 37997 37772 - 109 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37773 37997 109 - . gene_id 2 ; sequence CbirOr320 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37773 37997 . - . KQ414772.1 exonerate:protein2genome:local exon 37773 37997 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 37773 37997 109 - . alignment_id 2 ; Query CbirOr320 ; Align 37998 140 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 120 -> 225 Target range: 29640 -> 29325 121 : PheTyrThrMetLeuPheThrLeuAlaValTyrSerGlyLeuSerValCysValValIle : 140 |||:::::: |||||| ! !! ! !! ! !!! ! !:!!! !..! !:!: PhePheSerSerArgPheThrAlaAsnGlyIlePheCysTyrValIlePheThrSerVal 29640 : tttttttcttcacgttTCACAGCAAATGGAATCTTCTGCTACGTTATATTCACCTCAGTG : 29583 141 : GlnLeuAlaProAsnPheLeuAspPheValAlaProGlnAsnGluSerArgLeuHisHis : 160 !:!!.!!|||..! !!||||||.!!:!!:!!|||:!!|||||||||||| ! ! AlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValGly 29582 : GCGATAACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTGGGC : 29523 161 : IleProIleThrAlaGluTyrPheValAspGlnGlnLysCysTyrLeuProIleLeuLeu : 180 .!! ! ! !!||| ! ||| !:!!|||:!!:!!:!! !|||! ! !:!::!! ! PheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrTyrLeuMetGly 29522 : TTCATTTATCCTGCATACTACGGTCTTGACGAAGAGGAGCATTACTACTATCTGATGGGT : 29463 181 : HisIleAspValIleAlaValValGlyPheThrThrValMetSerThrGluSerLeuPhe : 200 |||!!: ! !:!: !..!|||! !||| !..! !!!:||| !!!:!!!:!!!:! HisMetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThrIleTyr 29462 : CACATGCTTTCCGTGATAACCGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATCTAT : 29403 201 : AlaAlaPheValGlnHisAlaIleGlyMetPheAlaIleAlaSerTyrArgIleGluHis : 220 ! ! !!|||||||||||| !|||:!:!!. !:!!:!!.!!!! ! !||| ... MetAsnValValGlnHisAlaCysGlyLeuLeuAsnValSerGly***ThrIlePheArg 29402 : ATGAATGTCGTGCAACACGCGTGTGGATTATTGAACGTCTCTGGGTAAACAATTTTCAGA : 29343 221 : AlaPheAspGluVal : 225 ..!!:!......:!! CysTyrSerSerIle 29342 : TGTTACTCGAGTATC : 29326 vulgar: CbirOr320 120 225 . KQ414772.1 29640 29325 - 107 M 105 315 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29326 29640 107 - . gene_id 3 ; sequence CbirOr320 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29326 29640 . - . KQ414772.1 exonerate:protein2genome:local exon 29326 29640 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 29326 29640 107 - . alignment_id 3 ; Query CbirOr320 ; Align 29641 121 315 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 137 -> 218 Target range: 14127 -> 13884 138 : ValValIleGlnLeuAlaProAsnPheLeuAspPheValAlaProGlnAsnGluSerArg : 157 |||..!! ! !:!!.!!|||:!!.!!||||||.!!:!! !|||:!!|||||||||||| ValThrThrProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArg 14127 : GTGACCACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAGAACGAGTCACGA : 14070 158 : LeuHisHisIleProIleThrAlaGluTyrPheValAspGlnGlnLysCysTyrLeuPro : 177 ! ! ! ! !!||| ! ||||||..!|||:!!!!.|||! ! !!:!! ! AspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyr 14069 : GACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTAC : 14010 178 : IleLeuLeuHisIleAspValIleAlaValValGlyPheThrThrValMetSerThrGlu : 197 |||:!! !|||!!:! !:!: !:!!|||! !||| !..! !:!::!! !!!: IleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrValAlaCysAsp 14009 : ATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGAC : 13950 198 : SerLeuPheAlaAlaPheValGlnHisAlaIleGlyMetPheAlaIleAlaSerTyrArg : 217 !!! !!:! ! ! !!|||||||||!.! !|||:!!!!.|||:!::!!.!. ::: ThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly***Lys 13949 : ACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaa : 13890 218 : Ile : 218 ||| Ile 13889 : att : 13885 vulgar: CbirOr320 137 218 . KQ414772.1 14127 13884 - 107 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13885 14127 107 - . gene_id 4 ; sequence CbirOr320 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13885 14127 . - . KQ414772.1 exonerate:protein2genome:local exon 13885 14127 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13885 14127 107 - . alignment_id 4 ; Query CbirOr320 ; Align 14128 138 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr329INT Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 44 -> 135 Target range: 42748 -> 42475 45 : IleIlePheGlnValIleAlaValCysSerLeuPheIleLeuIleIleSerGlnThrTrp : 64 ...|||||| |||! !!.!:!!|||!!!!!! !!:!!!||| !:!!! ! PheIlePheThrValThrGlyIleCysCysPheThrMetPheIleSerAlaProTyrIle 42748 : ttcattttcacagTAACTGGAATATGTTGCTTCACAATGTTTATCTCTGCGCCTTATATA : 42691 65 : MetAspIleCysAspValValLeuArgIleAsnThrSerArgSerHisAsnLeuMetIle : 84 ! !!:!!! !||||||:!!||| !! !||| !||||||!.! ..!!!!!!: ! ProHisValTyrAspValMetLeuSerLysAsnGluSerArgLysLeuGlyPheIleTyr 42690 : CCGCATGTATATGATGTTATGTTATCGAAAAACGAGTCACGAAAGTTGGGTTTCATTTAC : 42631 85 : MetThrGluTyrPheValAspGlnGluLysTyrTyrTyrPheIleLeuLeuHisIleAsn : 104 .!! ! ||| !|||||||||!!:||||||||||||!:!|||:!! !|||!!:!.. ProAlaTyrTyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAlaHisMetThr 42630 : CCTGCCTATTATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCTCACATGACA : 42571 105 : ValThrValSerIleAlaIlePheSerValMetAlaMetGlyThrMetPheLeuThrPhe : 124 ! !! !! !:!:!.!.!!|||!!! !!!!::!! ! !|||!!:!:!:!!!.!.!! SerGlyGlyLeuValValPhePheThrPheIleSerCysAspThrIleTyrMetAsnIle 42570 : TCTGGGGGCTTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTACATGAATATC : 42511 125 : PheGlnTyrSerTyrGlyMetPheArgIleAla : 135 ! |||:!!:!!! !|||:!!!!. !|||:!! ValGlnHisAlaCysGlyLeuLeuLeuIleSer 42510 : GTGCAACACGCGTGCGGATTGTTGTTGATTTCT : 42476 vulgar: CbirOr329INT 44 135 . KQ414772.1 42748 42475 - 126 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42476 42748 126 - . gene_id 1 ; sequence CbirOr329INT ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42476 42748 . - . KQ414772.1 exonerate:protein2genome:local exon 42476 42748 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42476 42748 126 - . alignment_id 1 ; Query CbirOr329INT ; Align 42749 45 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr329INT Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 68 -> 135 Target range: 33616 -> 33415 69 : AspValValLeuArgIleAsnThrSerArgSerHisAsnLeuMetIleMetThrGluTyr : 88 ||||||!.!||| !! !||| !||||||!.! !:!|||||| ! .!! ! ||| AspValAlaLeuSerLysAsnGluSerArgLysLeuSerLeuMetTyrProAlaTyrTyr 33616 : GATGTTGCGTTGTCGAAAAACGAGTCACGAAAATTAAGTTTGATGTACCCTGCCTATTAC : 33559 89 : PheValAspGlnGluLysTyrTyrTyrPheIleLeuLeuHisIleAsnValThrValSer : 108 !:!!||||||!::||||||||||||::::::::: !|||!!:! !.!!! !:!! GlyIleAspGlnAspLysTyrTyrTyrTyrLeuMetAlaHisMetMetSerAlaGlyAla 33558 : GGCATTGACCAGGacaagtattattattatctaatgGCTCACATGATGAGCGCAGGGGCA : 33499 109 : IleAlaIlePheSerValMetAlaMetGlyThrMetPheLeuThrPhePheGlnTyrSer : 128 !.!.!!||| ! !!|||:!! ! !|||!!:!:!:!!!.!.!! !!|||:!!:!! AlaValPhePheValPheMetSerCysAspThrIleTyrMetAsnIleValGlnHisAla 33498 : GCGGTGTTTTTCGTATTTATGTCCTGCGACACGATTTATATGAATATCGTTCAACACGCG : 33439 129 : TyrGlyMetPheArgIleAla : 135 ! !|||:!!!!. !|||:!! CysGlyLeuLeuPheIleSer 33438 : TGCGGATTGTTGTTCATTTCC : 33416 vulgar: CbirOr329INT 68 135 . KQ414772.1 33616 33415 - 113 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33416 33616 113 - . gene_id 2 ; sequence CbirOr329INT ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33416 33616 . - . KQ414772.1 exonerate:protein2genome:local exon 33416 33616 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 33416 33616 113 - . alignment_id 2 ; Query CbirOr329INT ; Align 33617 69 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr333CTE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 140 Query range: 125 -> 214 Target range: 42742 -> 42475 126 : PheIleMetIleAlaValCysSerIlePheIlePheIleIleAlaGlnThrTrpIleAsp : 145 ||| :!:! !!.!:!!|||!!!.!! !!:|||||| !|||! ! !! PheThrValThrGlyIleCysCysPheThrMetPheIleSerAlaProTyrIleProHis 42742 : ttcacagTAACTGGAATATGTTGCTTCACAATGTTTATCTCTGCGCCTTATATACCGCAT : 42685 146 : IlePheAspValValLeuGlnIleAsnLysSerArgSerGlnSerLeuLeuIleMetThr : 165 :!!!:!||||||:!!|||..!! !|||:!!||||||!.! !.!!!!!:!! ! .!! ValTyrAspValMetLeuSerLysAsnGluSerArgLysLeuGlyPheIleTyrProAla 42684 : GTATATGATGTTATGTTATCGAAAAACGAGTCACGAAAGTTGGGTTTCATTTACCCTGCC : 42625 166 : GluTyrPheValAspGlnGluLysTyrTyrTyrPheMetLeuLeuHisLeuAsnIleThr : 185 ! ||| !|||||||||!!:||||||||||||!:!!!::!! !|||:!!!.. ! ! TyrTyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAlaHisMetThrSerGly 42624 : TATTATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCTCACATGACATCTGGG : 42565 186 : ValSerIleAlaValPheIlePheValAlaIleGlyThrMetPheIleThrPhePheGln : 205 ! !! !:!:!.! !!|||! !|||:!!:!! !! !|||!!:!:!!!:!.!.!! ! ||| GlyLeuValValPhePheThrPheIleSerCysAspThrIleTyrMetAsnIleValGln 42564 : GGCTTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTACATGAATATCGTGCAA : 42505 206 : TyrIleTyrGlyLeuPheLysIleAla : 214 :!! ! !||||||!!. !|||:!! HisAlaCysGlyLeuLeuLeuIleSer 42504 : CACGCGTGCGGATTGTTGTTGATTTCT : 42476 vulgar: CbirOr333CTE 125 214 . KQ414772.1 42742 42475 - 140 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42476 42742 140 - . gene_id 1 ; sequence CbirOr333CTE ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42476 42742 . - . KQ414772.1 exonerate:protein2genome:local exon 42476 42742 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42476 42742 140 - . alignment_id 1 ; Query CbirOr333CTE ; Align 42743 126 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr333CTE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 108 -> 214 Target range: 33733 -> 33415 109 : IleAlaIleAlaGluLysTyrAsnTyrLysAlaArgArgTyrThrAlaThrPheIleMet : 128 ::: !:!! ::!||| !!! !! ... :::::::::...||| LeuLeuThrSerThrArgTyrTyrCysThrValTyrSerPheSerSerAsnPheThrAla 33733 : cttctcaCTTCTACCCGATATTATTGTActgtttattcattttcttcaaatttcacagCA : 33676 129 : IleAlaValCysSerIlePheIlePheIleIleAlaGlnThrTrpIleAspIlePheAsp : 148 ! !!.!|||! !!!! !.!!!!:|||! ! |||! ! !!.!!.!!||| AsnGlyValPheCysTyrIleMetPheSerSerAlaProPheIleProHisPheIleAsp 33675 : AACGGAGTGTTTTGCTACATCATGTTCAGCTCGGCGCCTTTTATACCGCATTTTATCGAT : 33616 149 : ValValLeuGlnIleAsnLysSerArgSerGlnSerLeuLeuIleMetThrGluTyrPhe : 168 |||!.!|||..!! !|||:!!||||||!.! !||||||:!! ! .!! ! ||| ! ValAlaLeuSerLysAsnGluSerArgLysLeuSerLeuMetTyrProAlaTyrTyrGly 33615 : GTTGCGTTGTCGAAAAACGAGTCACGAAAATTAAGTTTGATGTACCCTGCCTATTACGGC : 33556 169 : ValAspGlnGluLysTyrTyrTyrPheMetLeuLeuHisLeuAsnIleThrValSerIle : 188 :!!||||||!::||||||||||||::::::::: !|||:!!! ! !.!!! !:!! IleAspGlnAspLysTyrTyrTyrTyrLeuMetAlaHisMetMetSerAlaGlyAlaAla 33555 : ATTGACCAGGacaagtattattattatctaatgGCTCACATGATGAGCGCAGGGGCAGCG : 33496 189 : AlaValPheIlePheValAlaIleGlyThrMetPheIleThrPhePheGlnTyrIleTyr : 208 !.! !!|||:!!|||:!!:!! !! !|||!!:!:!!!:!.!.!! !!|||:!! ! ! ValPhePheValPheMetSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCys 33495 : GTGTTTTTCGTATTTATGTCCTGCGACACGATTTATATGAATATCGTTCAACACGCGTGC : 33436 209 : GlyLeuPheLysIleAla : 214 ||||||!!. |||:!! GlyLeuLeuPheIleSer 33435 : GGATTGTTGTTCATTTCC : 33416 vulgar: CbirOr333CTE 108 214 . KQ414772.1 33733 33415 - 128 M 106 318 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33416 33733 128 - . gene_id 2 ; sequence CbirOr333CTE ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33416 33733 . - . KQ414772.1 exonerate:protein2genome:local exon 33416 33733 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 33416 33733 128 - . alignment_id 2 ; Query CbirOr333CTE ; Align 33734 109 318 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr317NTE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 40 -> 88 Target range: 17949 -> 17805 41 : TyrPheIleAspGlnGlnLysTyrPhePheLeuIleLeuPheHisIleSerPhePheVal : 60 ||||||:!!|||:!! !:!!|||!:!!:!! !|||:!!.!!||| !!!!! ! :!! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIle 17949 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATT : 17892 61 : TrpCysGlyLeuAlaValValAlaAlaThrGluSerPheTyrMetSerLeuIleGlnHis : 80 ! ! !! !:!!!.!||| !..!||| !!!:!!! !|||||| !|||:!:|||||| LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 17891 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 17832 81 : AlaCysGlyLeuPheGlnIleAla : 88 .!!|||||||||||| :!:||| ThrCysGlyLeuPheAlaValAla 17831 : ACTTGCGGACTGTTCGCCGTGGCC : 17806 vulgar: CbirOr317NTE 40 88 . KQ414772.1 17949 17805 - 108 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17806 17949 108 - . gene_id 1 ; sequence CbirOr317NTE ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17806 17949 . - . KQ414772.1 exonerate:protein2genome:local exon 17806 17949 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17806 17949 108 - . alignment_id 1 ; Query CbirOr317NTE ; Align 17950 41 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr317NTE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 21 -> 88 Target range: 33616 -> 33415 22 : AspThrAlaValAspValAsnGluSerAsnIleArgAsnLeuProGlyLeuThrGluTyr : 41 |||..!|||:!!... !|||||||||...! ! !!:!||| ! !! !.!! ! ||| AspValAlaLeuSerLysAsnGluSerArgLysLeuSerLeuMetTyrProAlaTyrTyr 33616 : GATGTTGCGTTGTCGAAAAACGAGTCACGAAAATTAAGTTTGATGTACCCTGCCTATTAC : 33559 42 : PheIleAspGlnGlnLysTyrPhePheLeuIleLeuPheHisIleSerPhePheValTrp : 61 !|||||||||...||||||:::::: :::::: !|||!!:! ! ! ! ! GlyIleAspGlnAspLysTyrTyrTyrTyrLeuMetAlaHisMetMetSerAlaGlyAla 33558 : GGCATTGACCAGGacaagtattattattatctaatgGCTCACATGATGAGCGCAGGGGCA : 33499 62 : CysGlyLeuAlaValValAlaAlaThrGluSerPheTyrMetSerLeuIleGlnHisAla : 81 ...! !!!! !||| !! !:!! !!!:!!!.!!||||||!:!:!!:!!||||||||| AlaValPhePheValPheMetSerCysAspThrIleTyrMetAsnIleValGlnHisAla 33498 : GCGGTGTTTTTCGTATTTATGTCCTGCGACACGATTTATATGAATATCGTTCAACACGCG : 33439 82 : CysGlyLeuPheGlnIleAla : 88 |||||||||!!. |||:!! CysGlyLeuLeuPheIleSer 33438 : TGCGGATTGTTGTTCATTTCC : 33416 vulgar: CbirOr317NTE 21 88 . KQ414772.1 33616 33415 - 106 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33416 33616 106 - . gene_id 2 ; sequence CbirOr317NTE ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33416 33616 . - . KQ414772.1 exonerate:protein2genome:local exon 33416 33616 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 33416 33616 106 - . alignment_id 2 ; Query CbirOr317NTE ; Align 33617 22 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr323PC Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 167 -> 214 Target range: 17946 -> 17805 168 : PheLeuAspGlnGlnGlnPhePheTyrPheIleValSerAspPheAlaLeuIleAlaLeu : 187 |||:!!|||:!! !:!!!:!!:!|||!:!|||:!! ! !! .!!! !! ! !||| PheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIleLeu 17946 : TTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATTTTG : 17889 188 : IleGlyMetThrThrPheIleAlaThrGluThrMetPheMetMetPheIleLeuHisAla : 207 |||! !:!!..!..!!:! !||| !!!:|||! !:!|||:!:.!.:!:! !|||.!! IleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThr 17888 : ATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACT : 17829 208 : CysGlyLeuPheAlaIleAla : 214 |||||||||||||||:!:||| CysGlyLeuPheAlaValAla 17828 : TGCGGACTGTTCGCCGTGGCC : 17806 vulgar: CbirOr323PC 167 214 . KQ414772.1 17946 17805 - 100 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17806 17946 100 - . gene_id 1 ; sequence CbirOr323PC ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17806 17946 . - . KQ414772.1 exonerate:protein2genome:local exon 17806 17946 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17806 17946 100 - . alignment_id 1 ; Query CbirOr323PC ; Align 17947 168 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr316 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 147 -> 224 Target range: 26195 -> 25964 148 : LeuAspPheThrThrAlaAlaAsnGluSerArgIleArgGluPheProAlaLeuIleGlu : 167 ||||||.!! !! ! !! !||||||!!!||| !||| !||| ! !! ! ! ! LeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyr 26195 : CTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTAC : 26138 168 : CysPheIleAspHisGlnLysTyrPheTyrProIleLeuSerTyrMetPheLeuValIle : 187 ! !|||:!!|||.!..!.|||||| !||| !|||:!!.!!:!!|||!:!||||||:!: TyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValVal 26137 : TATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTG : 26078 188 : ValCysGlyGlnThrThrMetIleAlaThrGluThrLeuTyrMetThrTyrThrGlnHis : 207 ||| ! :!!..!.!. !||| !!!:.!! !|||:!! ! !..!|||||| ValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHis 26077 : GTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACAC : 26018 208 : AlaCysGlyLeuPheGluIleAlaAsnCysArgIleGluGlnAlaLeuLeu : 224 ||||||||||||!!.! ||||||...! !:!!:!! ! !|||:!! AlaCysGlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMet 26017 : GCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATG : 25965 vulgar: CbirOr316 147 224 . LHQN01017803.1 26195 25964 - 121 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25965 26195 121 - . gene_id 1 ; sequence CbirOr316 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25965 26195 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25965 26195 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25965 26195 121 - . alignment_id 1 ; Query CbirOr316 ; Align 26196 148 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr316 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 147 -> 215 Target range: 29577 -> 29373 148 : LeuAspPheThrThrAlaAlaAsnGluSerArgIleArgGluPheProAlaLeuIleGlu : 167 ||||||.!!! !:!! !! !|||||||||||| ! !! ||| ! !! ! !.!. LeuAspLeuIleSerProLysAsnGluSerArgGlyValGlyPheIleTyrProAlaAsn 29577 : CTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAAC : 29520 168 : CysPheIleAspHisGlnLysTyrPheTyrProIleLeuSerTyrMetPheLeuValIle : 187 ! ! !:!!|||.!.:!!:!!:!!!:!||| !:!::!!.!!:!!|||.!!! !|||||| TyrGlyValAspGluGluGluHisTyrTyrTyrLeuMetGlyHisMetLeuSerValIle 29519 : TACGGCGTCGACGAAGAGGAGCATTACTACTATCTGATGGGTCACATGCTTTCCGTGATA : 29460 188 : ValCysGlyGlnThrThrMetIleAlaThrGluThrLeuTyrMetThrTyrThrGlnHis : 207 ..! !! ! !..! |||:!! !!!:|||:!!||||||!.! !..!|||||| ThrValValPhePheValTyrIleSerCysAspThrIleTyrMetAsnIleValGlnHis 29459 : ACTGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCAACAC : 29400 208 : AlaCysGlyLeuPheGluIleAla : 215 ||||||||||||!!..!.:!!:!! AlaCysGlyLeuLeuAsnLeuSer 29399 : GCGTGTGGATTATTGAACCTCTCT : 29374 vulgar: CbirOr316 147 215 . LHQN01017803.1 29577 29373 - 102 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29374 29577 102 - . gene_id 2 ; sequence CbirOr316 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29374 29577 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29374 29577 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 29374 29577 102 - . alignment_id 2 ; Query CbirOr316 ; Align 29578 148 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr325PI(F) Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 134 -> 212 Target range: 26225 -> 25991 135 : PheTrpAlaIleGlnIleAlaIleProTyrLeuAspAsnValThrProIleAsnGlyCys : 154 ||| !..!:!:! !.!!!.! ||| !||||||! !:!!! !|||:!:|||! ! PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThr 26225 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACG : 26168 155 : ArgProHisArgLeuTyrIleAlaValGluTyrPheIleAspGlnGluLysTyrTyrTyr : 174 ||| !!!.. !!!! ! ! !!!.! ! ||||||:!!|||:!!!!:||||||:!!||| ArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyr 26167 : CGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTAC : 26108 175 : ValIleLeuIleHisMetAsnAlaAlaLeuPheIleGlyIleLeuSerLeuMetAlaSer : 194 :!!|||:!! |||||| !! !!.!:!! ! !!: !|||! ! !!!! |||!!! LeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCys 26107 : TTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGC : 26048 195 : AlaThrLeuMetLeuMetPhePheGlnHisAlaCysGlyMetPheLysIleAla : 212 ! !.!! ! :!! ! ! |||||||||||||||:!!!!. |||||| AspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla 26047 : GATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCA : 25992 vulgar: CbirOr325PI(F) 134 212 . LHQN01017803.1 26225 25991 - 116 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25992 26225 116 - . gene_id 1 ; sequence CbirOr325PI(F) ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25992 26225 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25992 26225 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25992 26225 116 - . alignment_id 1 ; Query CbirOr325PI(F) ; Align 26226 135 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr325PI(F) Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 134 -> 212 Target range: 29607 -> 29373 135 : PheTrpAlaIleGlnIleAlaIleProTyrLeuAspAsnValThrProIleAsnGlyCys : 154 ||| |||:!: !|||.!! !! ! !|||||| !:!!:!!|||! !|||! !! PheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSer 29607 : TTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCG : 29550 155 : ArgProHisArgLeuTyrIleAlaValGluTyrPheIleAspGlnGluLysTyrTyrTyr : 174 ||| ! !!!!! ! ! !!!.!.!.||| !:!!|||:!!|||:!!:!!|||||| ArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyrTyr 29549 : CGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTACTAC : 29490 175 : ValIleLeuIleHisMetAsnAlaAlaLeuPheIleGlyIleLeuSerLeuMetAlaSer : 194 !:!::!! !|||||| !:!!!.!:!! !:!!! !.!!!!! !! !!!::!!!!! TyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIleSerCys 29489 : TATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGT : 29430 195 : AlaThrLeuMetLeuMetPhePheGlnHisAlaCysGlyMetPheLysIleAla : 212 ! !|||:!! :!!! .!! ! |||||||||||||||:!:!!.!!.:!!:!! AspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSer 29429 : GACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCT : 29374 vulgar: CbirOr325PI(F) 134 212 . LHQN01017803.1 29607 29373 - 106 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29374 29607 106 - . gene_id 2 ; sequence CbirOr325PI(F) ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29374 29607 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29374 29607 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 29374 29607 106 - . alignment_id 2 ; Query CbirOr325PI(F) ; Align 29608 135 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr325PI(F) Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 164 -> 212 Target range: 18333 -> 18189 165 : TyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnAlaAlaLeu : 184 ||||||:!!|||:!!! !:!!||||||||| !|||:!!:!!||| !....!.!!:!! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIle 18333 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATT : 18276 185 : PheIleGlyIleLeuSerLeuMetAlaSerAlaThrLeuMetLeuMetPhePheGlnHis : 204 !!.|||! !:!::!! !! ! |||!!!! !||| ! :!!:!:.!. ! |||||| LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 18275 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 18216 205 : AlaCysGlyMetPheLysIleAla : 212 .!!||||||:!!||| :!:||| ThrCysGlyLeuPheAlaValAla 18215 : ACTTGCGGACTGTTCGCCGTGGCC : 18190 vulgar: CbirOr325PI(F) 164 212 . LHQN01017803.1 18333 18189 - 106 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18190 18333 106 - . gene_id 3 ; sequence CbirOr325PI(F) ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18190 18333 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18190 18333 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18190 18333 106 - . alignment_id 3 ; Query CbirOr325PI(F) ; Align 18334 165 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr326 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 166 -> 214 Target range: 18333 -> 18189 167 : TyrPheLeuAspGlnGluLysTyrLeuTyrPheIleLeuLeuHisIleSerLeuAlaIle : 186 ||||||:!!|||:!!! !:!!|||! !|||!:!|||:!!|||||| !!!!! !.!!||| TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIle 18333 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATT : 18276 187 : SerIleAlaValAlaValLeuIleAlaIleGlyThrMetPheIleAlaTyrLeuGlnHis : 206 ! !|||!.!|||!.!|||! ! !||| !! !|||! !:!!!:!.! :!!|||||| LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 18275 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 18216 207 : ThrCysGlyMetPheArgIleAla : 214 |||||||||:!!||| !:!:||| ThrCysGlyLeuPheAlaValAla 18215 : ACTTGCGGACTGTTCGCCGTGGCC : 18190 vulgar: CbirOr326 166 214 . LHQN01017803.1 18333 18189 - 120 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18190 18333 120 - . gene_id 1 ; sequence CbirOr326 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18190 18333 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18190 18333 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18190 18333 120 - . alignment_id 1 ; Query CbirOr326 ; Align 18334 167 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr322 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 117 -> 213 Target range: 26282 -> 25994 118 : AsnAlaLysPheTyrThrIlePheSerGlySerIleValTyrProGlyThrLeuAlaPhe : 137 ::! !..!|||||| !! |||..! ! ! !:!!! ! !!.!! ! !||| SerLeuSerPheTyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPhe 26282 : TCTCTGTCATTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTT : 26225 138 : IleLeuThrMetPheValProAspValLeuAspIleIleThrProLeuAspGluProArg : 157 !!:! ! ! !|||||| !! :!!|||||||||:!!! !||||||:!!||| !!||| MetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArg 26224 : ATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGA : 26165 158 : ProArgGlnLeuProValGlnIleGluPhePhePheAspGlnAspArgTyrPheTyrLeu : 177 !!||| !!!! ! !! ! ! ! !:!||| !!|||:!!|||!:!||| !|||||| AlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeu 26164 : GCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTG : 26105 178 : PheSerPheIlePheIleIleValAlaPheLeuGlyMetThrValLeuMetAlaThrGlu : 197 .!! ! !.!. !:!!|||!.! ! :!! !!!::!!|||!!! ||| !!!: IleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAsp 26104 : ATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGAT : 26045 198 : AsnMetTyrMetLeuPheThrGlnHisAlaCysGlyLeuPheLysLeu : 213 !! |||:!!! ! !..!||||||||||||||||||!!. :!! AlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 26044 : GCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 25995 vulgar: CbirOr322 117 213 . LHQN01017803.1 26282 25994 - 130 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25995 26282 130 - . gene_id 1 ; sequence CbirOr322 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25995 26282 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25995 26282 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25995 26282 130 - . alignment_id 1 ; Query CbirOr322 ; Align 26283 118 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr313PI Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 138 Query range: 74 -> 185 Target range: 26291 -> 25958 75 : IleValLysTyrValThrPheTyrPheIleThrGluAsnAlaLeuIleTyrMetCysLeu : 94 :!!! !:::! !:!!:!!|||||||||! !|||!..!.!! !|||! :!:||| ! LeuGluArgSerLeuSerPheTyrPheThrPheGluThrValHisIleSerLeuCysAla 26291 : TTAGAACGTTCTCTGTCATTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCC : 26234 95 : PheIleIleIleCysIleGlnTyrValProCysIleLeuAspValValMetProLeuAsn : 114 !:!!.!!!!:|||:!:! !!:!||| !! |||||||||:!!:!!|||||||||||| AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsn 26233 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAAC : 26174 115 : AsnSerArgArgValAlaLeuLeuPheGlnValGluTyrLeuValAsnHisGluGluTyr : 134 .!.!!!||| ! ! !!!!:!!!:!! !!.! ! |||!!!|||:!!.!.!!::!!||| GluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyr 26173 : GAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATAT : 26114 135 : TyrHisValIleGlnLeuHisLeuHisIleGlyLeuLeuValAlaAlaThrThrValLeu : 154 :!!:!!:!!||| ! !|||:!!:!!:!!! !:!!:!!:!! ! !:!!..! !!! ! HisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCys 26113 : CATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGC : 26054 155 : AlaThrGluSerPheCysLeuThrLeuSerIleHisAlaPheAlaMetPheLysIleAla : 174 ||| !!!::!! !! !:!! ! ! ! !||||||! !!.!:!!!!. |||||| AlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla 26053 : GCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCA : 25994 175 : SerTyrArgMetGlnArgIleIleAspLysAsn : 185 .!!!! !:!:||| !! !:!! :!!||| Gly***LeuValGlnGlyGlnLeuMetGluAsn 25993 : GGGTAATTAGTTCAAGGACAATTAATGGAAAAT : 25959 vulgar: CbirOr313PI 74 185 . LHQN01017803.1 26291 25958 - 138 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25959 26291 138 - . gene_id 1 ; sequence CbirOr313PI ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25959 26291 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25959 26291 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25959 26291 138 - . alignment_id 1 ; Query CbirOr313PI ; Align 26292 75 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr314 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 133 Query range: 136 -> 219 Target range: 26225 -> 25976 137 : PheIleMetMetGluValLeuProLysIleLeuAspIleValValProLeuAsnGluSer : 156 |||!!: :!! ! !!:!! !! !||||||||||||:!!:!!||||||||||||!!! PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThr 26225 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACG : 26168 157 : ArgProValHisLeuLeuGlyValAlaThrLeuPhePheAspGluGluLysTyrPhePhe : 176 ||| !! ! !!!:!! ! !||| !! !||| !!||||||!!:|||||| !!:! ArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyr 26167 : CGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTAC : 26108 177 : ProIleLeuGlyHisMetThrValAlaLeuLeuSerGluThrThrThrIleIleAlaThr : 196 !|||:!!||||||||| !:!!!.!:!!:!!! ! ! !:!!..!.!! !||| ! LeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCys 26107 : TTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGC : 26048 197 : GluThrValGlyLeuIleLeuIleGlnHisLeuCysGlyLeuPheLysIleAlaSerPhe : 216 !!:.!! ! !:!! ! !:!:|||||| !|||||||||!!. ||||||.!!! AspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly*** 26047 : GATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAA : 25988 217 : ArgIleGln : 219 !:!!||| LeuValGln 25987 : TTAGTTCAA : 25977 vulgar: CbirOr314 136 219 . LHQN01017803.1 26225 25976 - 133 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25977 26225 133 - . gene_id 1 ; sequence CbirOr314 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25977 26225 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25977 26225 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25977 26225 133 - . alignment_id 1 ; Query CbirOr314 ; Align 26226 137 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr314 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 120 -> 205 Target range: 33735 -> 33480 121 : IleLeuThrMetSerIleLeuIleLeuPheTyrIleAlaIlePheGlyPheIleMetMet : 140 :!!|||:!!!!: ! !! !:!! !.!.||||||!.!:!:! !! !||| !! ! ValLeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThrAla 33735 : GTTTTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCG : 33678 141 : GluValLeuProLysIleLeuAspIleValValProLeuAsnGluSerArgProValHis : 160 :!!:!!||| |||||||||:!!:!! !||||||||||||||||||||| ! ProLeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArgLeu 33677 : CCCCTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTG : 33618 161 : LeuLeuGlyValAlaThrLeuPhePheAspGluGluLysTyrPhePheProIleLeuGly : 180 ! ! ! ! !||| !! !!:!|||:!! !!!: ! |||!:!!:! !:!!:!!||| TyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValValGly 33617 : TACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTGGGG : 33558 181 : HisMetThrValAlaLeuLeuSerGluThrThrThrIleIleAlaThrGluThrValGly : 200 :!!! !:!!.!..!:!! !! !! ! !..!:!!:!!!.!.!!!!:! !:!! ! TyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAlaAspIleIleMet 33557 : TACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATTATG : 33498 201 : LeuIleLeuIleGln : 205 :!! !|||:!!!:: IleHisLeuValArg 33497 : ATACATCTTGTACGT : 33481 vulgar: CbirOr314 120 205 . LHQN01017803.1 33735 33480 - 105 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33481 33735 105 - . gene_id 2 ; sequence CbirOr314 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33481 33735 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33481 33735 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33481 33735 105 - . alignment_id 2 ; Query CbirOr314 ; Align 33736 121 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr314 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 130 -> 214 Target range: 18441 -> 18189 131 : TyrIleAlaIlePheGlyPheIleMetMetGluValLeuProLysIleLeuAspIleVal : 150 ||||||..! ||| !||||||...:!! ! !! ! !!::!:!::!!:!! ! TyrIleCysSerPheLeuPheIleGlnValProTrpSerThrArgLeuValAsnSerTyr 18441 : TACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCGTAC : 18384 151 : ValProLeuAsnGluSerArgProValHisLeuLeuGlyValAlaThrLeuPhePheAsp : 170 ! !!! !||| !!!!! ! !:!!! :!!:!!! ! !!.! !! !||| !!||| LysThrGlnAsnIleThrProSerLeuProValValValProGlyTyrTyrPheValAsp 18383 : AAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGAC : 18324 171 : GluGluLysTyrPhePheProIleLeuGlyHisMetThrValAlaLeuLeuSerGluThr : 190 |||! !:!!|||!:!!:! !|||:!! !||| ||| !.!!:!!|||! !! !..! GluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIleLeuIleValVal 18323 : GAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTG : 18264 191 : ThrThrIleIleAlaThrGluThrValGlyLeuIleLeuIleGlnHisLeuCysGlyLeu : 210 ..!..! ! !||| !!!:||| ! !:!!:!!|||:!:|||||| !||||||||| ValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeu 18263 : GTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTG : 18204 211 : PheLysIleAla : 214 ||| :!:||| PheAlaValAla 18203 : TTCGCCGTGGCC : 18190 vulgar: CbirOr314 130 214 . LHQN01017803.1 18441 18189 - 103 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18190 18441 103 - . gene_id 3 ; sequence CbirOr314 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18190 18441 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18190 18441 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18190 18441 103 - . alignment_id 3 ; Query CbirOr314 ; Align 18442 131 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 137 -> 225 Target range: 29604 -> 29340 138 : ValValIleGlnLeuAlaProAsnPheLeuAspPheValAlaProGlnAsnGluSerArg : 157 ..!!.!:!: !:!!.!!|||..! !!||||||.!!:!!:!!|||:!!|||||||||||| ThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArg 29604 : ACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGC : 29547 158 : LeuHisHisIleProIleThrAlaGluTyrPheValAspGlnGlnLysCysTyrLeuPro : 177 ! !.!! ! ! !!|||.!.||| !||||||:!!:!!:!! !|||! ! ! GlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyrTyrTyr 29546 : GGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTACTACTAT : 29487 178 : IleLeuLeuHisIleAspValIleAlaValValGlyPheThrThrValMetSerThrGlu : 197 :!::!! !|||!!: ! !:!: !..!|||! !||| !..! !!!:||| !!!: LeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIleSerCysAsp 29486 : CTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGTGAC : 29427 198 : SerLeuPheAlaAlaPheValGlnHisAlaIleGlyMetPheAlaIleAlaSerTyrArg : 217 !!!:!!!:! ! !.!!|||||||||||| !|||:!:!!. !:!!:!!.!!!! ! ThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSerGly***Ala 29426 : ACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCTGGGTAAGCA : 29367 218 : IleGluHisAlaPheAspGluVal : 225 ||| .....!!:!......:!! IlePheArgCysTyrSerSerIle 29366 : ATTTTCAGATGTTACTCGAGTATC : 29341 vulgar: CbirOr320 137 225 . LHQN01017803.1 29604 29340 - 110 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29341 29604 110 - . gene_id 1 ; sequence CbirOr320 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29341 29604 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29341 29604 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 29341 29604 110 - . alignment_id 1 ; Query CbirOr320 ; Align 29605 138 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 137 -> 218 Target range: 14164 -> 13921 138 : ValValIleGlnLeuAlaProAsnPheLeuAspPheValAlaProGlnAsnGluSerArg : 157 ||| !! ! !:!!.!!|||:!!.!!||||||.!!:!! !|||:!!|||||||||||| ValSerThrProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArg 14164 : GTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAGAACGAGTCACGA : 14107 158 : LeuHisHisIleProIleThrAlaGluTyrPheValAspGlnGlnLysCysTyrLeuPro : 177 ! ! ! ! !!||| ! ||||||..!|||:!!!!.|||! ! !!:!! ! AspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyr 14106 : GACGTAGCGTACATTTATCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTAC : 14047 178 : IleLeuLeuHisIleAspValIleAlaValValGlyPheThrThrValMetSerThrGlu : 197 |||:!! !|||!!:! !:!: !:!!|||! !||| !..! !:!::!! !!!: IleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrValAlaCysAsp 14046 : ATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGAC : 13987 198 : SerLeuPheAlaAlaPheValGlnHisAlaIleGlyMetPheAlaIleAlaSerTyrArg : 217 !!! !!:! ! ! !!|||||||||!.! !|||:!!!!.|||:!::!!.!. ::: ThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly***Lys 13986 : ACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaa : 13927 218 : Ile : 218 ||| Ile 13926 : att : 13922 vulgar: CbirOr320 137 218 . LHQN01017803.1 14164 13921 - 105 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13922 14164 105 - . gene_id 2 ; sequence CbirOr320 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13922 14164 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13922 14164 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13922 14164 105 - . alignment_id 2 ; Query CbirOr320 ; Align 14165 138 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr318 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 134 -> 234 Target range: 26228 -> 25934 135 : LeuPheValThrValValPheLeuTrpProAsnIleLeuAsnIleValMetProLeuAsn : 154 ||||||:!! !:!! !|||:!!! !||| ||||||:!!|||:!!|||||||||||| LeuPheMetCysLeuProPheValSerPro---IleLeuAspIleLeuMetProLeuAsn 26228 : CTATTTATGTGCTTGCCGTTCGTGTCGCCG---ATTCTGGACATCCTTATGCCGTTGAAC : 26174 155 : GluSerArgArgSerArgGlnPheProAspAlaMetGluTyrPheIleAspGlnGluLys : 174 |||!!! |||:!!||| !||| ! !! !! ! ||||||:!!|||:!!!!:||| GluThr---ArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLys 26173 : GAGACG---CGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAA : 26117 175 : TyrIleTyrLeuLeuThrPheTyrSerValValIleAlaPheValThrIleSerValVal : 194 ||| !||||||:!!..! :!!! ! !:!!:!!!.! ! :!! !||||||||| !! TyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPhe 26116 : TATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTC : 26057 195 : LeuSerIleGluAlaPheSerValLeuHisIleHisHisIleCysAlaMetPheGlnIle : 214 ! !:!! !!!:||| !! !|||! ! !:!:!!.||| !|||!.!:!!!!. ||| CysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 26056 : TGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 25997 215 : ValSerTyrArgIleGluCysIleValLysLysAsnGluMetLysSerLeuAsnLeuVal : 234 !.!.!!!! !:!!:!! ! !:!!! !:!!|||! .!. ! ! !|||!!!||| AlaGly***LeuValGlnGlyGlnLeuMetGluAsnGlyPheLeuTyrArgAsnPheVal 25996 : GCAGGGTAATTAGTTCAAGGACAATTAATGGAAAATGGTTTTCTTTATAGAAATTTCGTT : 25937 vulgar: CbirOr318 134 234 . LHQN01017803.1 26228 25934 - 118 M 10 30 G 1 0 M 11 33 G 1 0 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25935 26228 118 - . gene_id 1 ; sequence CbirOr318 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25935 26228 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25935 26228 . - . insertions 0 ; deletions 2 LHQN01017803.1 exonerate:protein2genome:local similarity 25935 26228 118 - . alignment_id 1 ; Query CbirOr318 ; Align 26229 135 30 ; Align 26199 146 33 ; Align 26166 158 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr317NTE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 2 -> 88 Target range: 26246 -> 25991 3 : IleHisLeuSerAlaPheGlyPheValLeuIleTyrLeuValSerThrPheLeuSerAsp : 22 ||| |||!!!||| ! !|||:!!! !:!: !!!|||||| !!.!!||| ||| IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeu---Asp 26246 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTG---GAC : 26192 23 : ThrAlaValAspValAsnGluSerAsnIleArgAsnLeuProGlyLeuThrGluTyrPhe : 42 ! ! !:!! :!!||||||!!!... !||| !!! ! !! !.!! ! |||||| IleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPhe 26191 : ATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTC : 26132 43 : IleAspGlnGlnLysTyrPhePheLeuIleLeuPheHisIleSerPhePheValTrpCys : 62 :!!|||:!!.!.|||||| !!:!||||||:!! |||!!:! !.!! ! ||| ValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMet 26131 : GTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATG : 26072 63 : GlyLeuAlaValValAlaAlaThrGluSerPheTyrMetSerLeuIleGlnHisAlaCys : 82 !:!!:!!||| !!..!||| !!!::!! !|||:!!! ! !:!:|||||||||||| LeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCys 26071 : CTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGC : 26012 83 : GlyLeuPheGlnIleAla : 88 ||||||!!. |||||| GlyLeuLeuAlaIleAla 26011 : GGATTGTTGGCCATTGCA : 25992 vulgar: CbirOr317NTE 2 88 . LHQN01017803.1 26246 25991 - 116 M 18 54 G 1 0 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25992 26246 116 - . gene_id 1 ; sequence CbirOr317NTE ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25992 26246 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25992 26246 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25992 26246 116 - . alignment_id 1 ; Query CbirOr317NTE ; Align 26247 3 54 ; Align 26193 22 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr317NTE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 40 -> 88 Target range: 18333 -> 18189 41 : TyrPheIleAspGlnGlnLysTyrPhePheLeuIleLeuPheHisIleSerPhePheVal : 60 ||||||:!!|||:!! !:!!|||!:!!:!! !|||:!!.!!||| !!!!! ! :!! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIle 18333 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATT : 18276 61 : TrpCysGlyLeuAlaValValAlaAlaThrGluSerPheTyrMetSerLeuIleGlnHis : 80 ! ! !! !:!!!.!||| !..!||| !!!:!!! !|||||| !|||:!:|||||| LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 18275 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 18216 81 : AlaCysGlyLeuPheGlnIleAla : 88 .!!|||||||||||| :!:||| ThrCysGlyLeuPheAlaValAla 18215 : ACTTGCGGACTGTTCGCCGTGGCC : 18190 vulgar: CbirOr317NTE 40 88 . LHQN01017803.1 18333 18189 - 108 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18190 18333 108 - . gene_id 2 ; sequence CbirOr317NTE ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18190 18333 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18190 18333 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18190 18333 108 - . alignment_id 2 ; Query CbirOr317NTE ; Align 18334 41 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr323PC Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 167 -> 214 Target range: 18330 -> 18189 168 : PheLeuAspGlnGlnGlnPhePheTyrPheIleValSerAspPheAlaLeuIleAlaLeu : 187 |||:!!|||:!! !:!!!:!!:!|||!:!|||:!! ! !! .!!! !! ! !||| PheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIleLeu 18330 : TTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATTTTG : 18273 188 : IleGlyMetThrThrPheIleAlaThrGluThrMetPheMetMetPheIleLeuHisAla : 207 |||! !:!!..!..!!:! !||| !!!:|||! !:!|||:!:.!.:!:! !|||.!! IleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThr 18272 : ATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACT : 18213 208 : CysGlyLeuPheAlaIleAla : 214 |||||||||||||||:!:||| CysGlyLeuPheAlaValAla 18212 : TGCGGACTGTTCGCCGTGGCC : 18190 vulgar: CbirOr323PC 167 214 . LHQN01017803.1 18330 18189 - 100 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18190 18330 100 - . gene_id 1 ; sequence CbirOr323PC ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18190 18330 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18190 18330 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18190 18330 100 - . alignment_id 1 ; Query CbirOr323PC ; Align 18331 168 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr318 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 94 -> 214 Target range: 464406 -> 464840 95 : GlnIleGlnSerAspTrpAsnSerLeuGlnAsnGluGluGluLeuArgIleIleHisA : 114 !:!:!:::!! !|||||||||!!!||||||||| !!!:|||! !!.!|||:!: ! ! ArgValArgTyrAspTrpAsnThrLeuGlnAsnThrAspGluTyrAsnIleLeuLysL 464407 : CGGGTGAGATATGACTGGAACACGCTACAAAACACGGATGAATATAATATTCTGAAAA : 464464 115 : rgHisThrArgAsnAlaArgAspPheIleThrIleThrIle{T} >>>> Target : 128 :!:!!|||..!!:!|||! ! ! !!! !! !||| !:!!{!} 74 ysTyrThrGluSerAlaThrLeuValAsnLysIleHisLeu{M}++ 464465 : AGTATACCGAGAGCGCTACACTTGTTAACAAAATCCACTTA{A}gt............ : 464509 129 : Intron 1 >>>> {hr}CysPheTyrLeuIleIleLeuPheValThrValValPhe : 141 bp { !}|||||| !! !:!!|||||||||:!! !:!!:!! ++{et}CysPheIleProValIleLeuPheIleCysLeuLeuGlu 464510 : .............ag{TG}TGCTTCATTCCCGTTATACTGTTCATCTGTTTACTCGAA : 464619 142 : LeuTrpProAsnIleLeuAsnIleValMetProLeuAsnGluSerArgArgSerArgG : 161 :!!! !|||:!!||||||:!!:!:||| !||||||||||||||| ||||||!.!| ValLeuProAspIleLeuAspValValAlaProLeuAsnGluSer---ArgSerHisG 464620 : GTATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATGAATCT---CGTTCTCATC : 464676 162 : lnPheProAspAlaMetGluTyrPheIleAspGlnGluLysTyrIleTyrLeuLeuTh : 180 ||!:! ! !.!! !|||!:!|||||| !.!......! ! !|||:!!:!!|| lnTyrLeuIleThrAlaGluPhePheIleThrAspSerSerProAsnTyrIleValTh 464677 : AATACTTAATTACCGCGGAATTTTTCATCACTGATAGTTCGCCGAATTATATCGTAAC : 464733 181 : rPheTyrSerValValIleAlaPheValThr<->IleSerValValLeuSerIleGlu : 198 |! ! !.!!..!! !|||.!!.!!:!!! ! :!!!!!..!:!!:!!:!! !||| rCysValGlyThrAspIleThrLeuIleMetGlyValThrThrIleIleAlaSerGlu 464734 : TTGTGTTGGTACGGATATTACTCTTATCATGGGAGTCACGACAATAATTGCCTCCGAA : 464790 199 : AlaPheSerValLeuHisIleHisHisIleCysAlaMetPheGlnIle : 214 .!!|||!!! !!||| :!:!!.||||||||||||||||||:!!||| ThrPheThrPheLeuLeuLeuGlnHisIleCysAlaMetPheLysIle 464791 : ACGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAATGTTCAAAATC : 464840 vulgar: CbirOr318 94 214 . KQ414815.1 464406 464840 + 183 M 33 99 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 28 84 G 1 0 M 33 99 G 0 3 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464407 464840 183 + . gene_id 1 ; sequence CbirOr318 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 464407 464506 . + . KQ414815.1 exonerate:protein2genome:local exon 464407 464506 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 464507 464508 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 464507 464580 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 464579 464580 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 464581 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464581 464840 . + . insertions 3 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 464407 464840 183 + . alignment_id 1 ; Query CbirOr318 ; Align 464407 95 99 ; Align 464583 129 84 ; Align 464667 158 99 ; Align 464769 191 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr318 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 89 -> 215 Target range: 484778 -> 485929 90 : LysHisPheMetGluGlnIleGlnSerAspTrpAsnSerLeuGlnAsnGluGluGluL : 109 |||.!.|||:!!|||!:!|||:!! !||||||||||||||| !|||:!!||||||| LysGluPheLeuGluArgIleGluHisAspTrpAsnSerLeuThrAsnLysGluGluL 484779 : AAGGAGTTTTTGGAACGAATTGAACACGATTGGAACTCGTTGACGAATAAAGAGGAGC : 484836 110 : euArgIleIleHisArgHisThrArgAsnAlaArgAspPheIleThrIleThrIle{T : 128 ||||||||||||||..!:!!:!!!!! !.!!|||! !.!.! !! ! ! ! !{ euArgIleIleHisGluTyrSerSerValThrArgValLeuThrIleCysPheSer{L 484837 : TTCGGATCATTCACGAATATTCCAGTGTCACGAGAGTTCTAACCATATGTTTCTCA{T : 484893 129 : } >>>> Target Intron 1 >>>> {hr}CysPheTyrLeuIleIleLeuPhe : 136 } 776 bp { !} !.!! !! ! :!!||| ! }++ ++{eu}IleIleGlyProSerLeuLeuVal 484894 : }gt.........................ag{TA}ATTATCGGTCCATCGTTACTTGTG : 485693 137 : ValThrValValPheLeuTrpProAsnIleLeuAsnIleValMetProLeuAsnGluS : 156 :!!! !:!!! !.!.!!! !!:!||||||:!!|||:!!!!:||||||||| ! ! LeuIleLeuGlyIlePheAsnAsnSerIleLeuAspIleLeuIleProLeuAsnTyrT 485694 : CTGATTCTTGGTATATTTAACAACAGTATTCTGGACATTTTGATTCCTTTGAATTACA : 485753 157 : erArgArgSerArgGlnPheProAspAlaMetGluTyrPheIleAspGlnGluLysTy : 175 !! ||| !!||| !.!!||| ! !|||:!!|||:!!||||||:!!||||| hr---ArgProArgThrIleProIleAsnSerGluHisPheValAspGlnGlnLysTy 485754 : CT---CGTCCGCGGACGATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTA : 485807 176 : rIleTyrLeuLeuThrPheTyrSerValValIleAlaPheValThrIleSerValVal : 194 |.!!|||! !:!!.!! :!! !|||:!!.!!!.!.!!:!! ! ! !|||:!! rPheTyrProIleAlaAlaHisValValLeuPheValIleIleGlyAlaIleValLeu 485808 : TTTCTACCCTATTGCAGCACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTA : 485864 195 : LeuSerIleGluAlaPheSerValLeuHisIleHisHisIleCysAlaMetPheGlnI : 214 |||||| ||| ... ::: ! |||!!.|||! !|||!.!:!!!:! !| LeuSerThrGluIleLeuIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrI 485865 : CTCAGCaccgaaatattaattatggCGATAATACAGCACACCTGTGGTTTGTATACAA : 485924 215 : leVal : 215 ||||| leVal 485925 : TCGTT : 485929 vulgar: CbirOr318 89 215 . KQ414815.1 484778 485929 + 177 M 38 114 S 0 1 5 0 2 I 0 772 3 0 2 S 1 2 M 28 84 G 1 0 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 484779 485929 177 + . gene_id 2 ; sequence CbirOr318 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 484779 484893 . + . KQ414815.1 exonerate:protein2genome:local exon 484779 484893 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 484894 484895 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 484894 485669 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 485668 485669 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 485670 485929 . + . KQ414815.1 exonerate:protein2genome:local exon 485670 485929 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 484779 485929 177 + . alignment_id 2 ; Query CbirOr318 ; Align 484779 90 114 ; Align 485672 129 84 ; Align 485756 158 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr318 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 129 -> 215 Target range: 481983 -> 482238 130 : PheTyrLeuIleIleLeuPheValThrValValPheLeuTrpProAsnIleLeuAsnI : 149 .!!|||! ! :!:|||.!.:!!! !:!! ! !:!!! ! ! !:!!|||:!!: IleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspV 481984 : ATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACG : 482041 150 : leValMetProLeuAsnGluSerArgArgSerArgGlnPheProAspAlaMetGluTy : 168 !!:!!:!:||||||||||||!!! |||!!!!.!|||||||||! :!!|||||||| alIleValProLeuAsnGluThr---ArgThrHisGlnPheProValSerMetGluTy 482042 : TCATTGTTCCTCTAAACGAGACT---CGTACGCACCAATTTCCAGTATCAATGGAGTA : 482095 169 : rPheIleAspGlnGluLysTyrIleTyrLeuLeuThrPheTyrSerValValIleAla : 187 |||||||||||||:!!|||||| ! !!!!:!!||||||:!!..! ! !! ! ! rPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPhe 482096 : CTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTT : 482152 188 : PheValThrIleSerValValLeuSerIleGluAlaPheSerValLeuHisIleHisH : 207 .!!|||..! !!!!:!!:!!:!!.!!||||||.!!!!.! !|||:!! :!!.!.| LeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluH 482153 : CTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAAC : 482212 208 : isIleCysAlaMetPheGlnIleVal : 215 || !...::!:!!||| :!!||| isAlaAlaSerLeuPheThrLeuVal 482213 : ACGCTGCAAGCTTGTTCACCCTTGTA : 482238 vulgar: CbirOr318 129 215 . KQ414815.1 481983 482238 + 146 M 27 81 G 1 0 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481984 482238 146 + . gene_id 3 ; sequence CbirOr318 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481984 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 481984 482238 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 481984 482238 146 + . alignment_id 3 ; Query CbirOr318 ; Align 481984 130 81 ; Align 482065 158 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr318 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 269 -> 388 Target range: 457937 -> 458702 270 : PheLeuIleSerIleProLeuGlyValIleSerLeuSerIleAsnLeu<->Tyr >> : 287 !:!||||||!!! ! !!|||.!!||||||||||||.!!||||||||| ||| TyrLeuIleThrAlaThrLeuSerValIleSerLeuGlyIleAsnLeuPheTyr++ 457938 : TATTTGATCACGGCCACACTTAGCGTGATTAGTCTCGGTATAAACTTGTTCTACgt.. : 457994 288 : >> Target Intron 1 >>>> ArgLeuCysLeuTyrLeuLysThrHisAspIle : 297 101 bp !||| ! !:!! !! !.!.:!!!!: ++LeuLeuGluGluValIleAlaMetGluAsnMet 457995 : .......................agTTACTCGAAGAGGTTATAGCAATGGAAAACATG : 458123 298 : GlyLeuIleSerLeuSerGlyLeuPheValIleSerHisPheIleTyrIlePhePheG : 317 ! !:!: ! !:!! !|||.!!:!!||||||||||||:!!|||! !|||.!.! LysGluLeuLeuAlaAlaMetLeuLeuMetIleSerHisPheLeuTyrThrPheLeuA 458124 : AAGGAGCTGCTAGCTGCTATGCTACTCATGATCAGTCACTTCCTTTACACATTTCTGG : 458183 318 : lyAsnAsnAsnCysGlnLysIleIleAspTyrSerAspGlyValPheLysThr{Le} : 335 .!||| !! ! ! |||! :!:!!:|||:!!||| !! !|||||| ! ! !{ } laAsnTyrAlaGlyGlnIleValMetAspHisSerIleAspValPheAspLys{Th}+ 458184 : CGAACTATGCCGGGCAAATCGTGATGGATCACAGTATCGACGTTTTCGATAAA{AC}g : 458239 336 : >>>> Target Intron 2 >>>> {u}CysSerThrArgTrpTyrAlaThrPro : 344 304 bp {!}! !! !! !! !|||||| !.!!||| + ++{r}TyrLeuIleProTrpTyrArgAlaPro 458240 : t.........................ag{A}TACTTGATTCCATGGTACCGTGCTCCA : 458568 345 : ValTyrValGlnLysTyrLeuLeuLeuIleMetCysArgSerMetLysThrSerSerI : 364 :!! :!!|||||||||||||||!!!||| ||||||! !:!..!||||||: LeuArgIleGlnLysTyrLeuLeuPheIleSerGluArgSerLysArgValSerSerL 458569 : TTACGAATACAAAAGTATCTCTTGTTCATATCAGAACGCAGCAAAAGAGTGAGTTCCT : 458628 365 : leLeuValGlyHisIlePheValProSerLeuGlnGlyTyrAlaThrLeuIleSerSe : 383 !:! !:!! ! !!!:.!!:!! ! |||...::: :::||||||:!!! !!.!|| euCysMetTyrGlyMetIleIleAlaSerPheGluPhePheAlaThrValThrLysSe 458629 : TGTGCATGTATGGCATGATCATTGCatccttcgaatttttcgccaCGGTAACAAAATC : 458685 384 : rSerLeuSerTyrPhe : 388 |!!!||| :::||| rTrpLeu***HisPhe 458686 : TTGGCtatgacatttt : 458702 vulgar: CbirOr318 269 388 . KQ414815.1 457937 458702 + 137 M 16 48 G 0 3 M 1 3 5 0 2 I 0 97 3 0 2 M 48 144 S 0 2 5 0 2 I 0 300 3 0 2 S 1 1 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457938 458702 137 + . gene_id 4 ; sequence CbirOr318 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 457938 457991 . + . KQ414815.1 exonerate:protein2genome:local exon 457938 457991 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 457992 457993 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 457992 458092 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 458091 458092 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458093 458238 . + . KQ414815.1 exonerate:protein2genome:local exon 458093 458238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 458239 458240 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 458239 458542 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 458541 458542 . + . intron_id 1 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458543 458702 . + . KQ414815.1 exonerate:protein2genome:local exon 458543 458702 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457938 458702 137 + . alignment_id 4 ; Query CbirOr318 ; Align 457938 270 48 ; Align 457989 286 3 ; Align 458093 287 144 ; Align 458544 336 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr318 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 130 -> 214 Target range: 457162 -> 457411 131 : TyrLeuIleIleLeuPheValThrValValPheLeuTrpProAsnIleLeuAsnIleV : 150 |||! ! ! !||| !!:!!|||..!:!! |||!::|||! :!!|||:!!|||| TyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleV 457163 : TATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTG : 457220 151 : alMetProLeuAsnGluSerArgArgSerArgGlnPheProAspAlaMetGluTyrPh : 169 ||:!:||||||||||||||||||! !!!!..! !!:!! ! ||| |||||||| alValProLeuAsnGluSerArgProCysGluLeuTyrLeuThrAla---GluTyrPh 457221 : TGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCG---GAATACTT : 457274 170 : eIleAspGlnGluLysTyrIleTyrLeuLeuThrPheTyrSerValValIleAlaPhe : 188 |:!!|||..!:!!||||||!!::!!! !:!!! ! :!!! !:!!..! ! !.!. eValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeu 457275 : TGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTG : 457331 189 : ValThrIleSerValValLeuSerIleGluAlaPheSerValLeuHisIleHisHisI : 208 :!!.!! !!!!..!:!! !:!!! !|||:!!!!. !:!! !:!!:!!! |||: IleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisV 457332 : ATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACG : 457391 209 : leCysAlaMetPheGlnIle : 214 !!|||!.!:!!|||:!!:!! alCysGlyLeuPheLysLeu 457392 : TTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr318 130 214 . KQ414815.1 457162 457411 + 127 M 35 105 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457163 457411 127 + . gene_id 5 ; sequence CbirOr318 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457163 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457163 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457163 457411 127 + . alignment_id 5 ; Query CbirOr318 ; Align 457163 131 105 ; Align 457268 167 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr318 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 337 -> 393 Target range: 449617 -> 449888 338 : ThrArgTrpTyrAlaThrProValTyrValGlnLysTyrLeuLeuLeuIleMetCysA : 357 |||!:!||||||! !.!!||||||!:!||||||||| ! !|||!!!:!:||| | ThrLysTrpTyrGluAlaProValPheValGlnLysMetTyrLeuPheLeuMetLeuA 449618 : ACAAAATGGTACGAAGCTCCAGTGTTCGTGCAAAAGATGTACTTGTTCTTGATGCTAA : 449675 358 : rgSerMetLysThrSerSerIleLeuValGlyHisIlePheValProSerLeuGlnGl : 376 ||!!!! ||| ! !!.!|||:!!:!!||| .!!!:!..!||||||:!!:!!|| rgThrThrLysAspValLysIleValLeuGly---PheTyrThrProSerIleGluGl 449676 : GAACCACAAAAGACGTAAAGATAGTTCTTGGT---TTCTATACCCCATCGATAGAGGG : 449729 377 : yTyrAlaThr >>>> Target Intron 1 >>>> LeuIleSerSerSerLeuS : 386 |!:!:!!:!! 106 bp |||!!:!:!! !!!!!!!| yPheSerSer++ ++LeuMetAsnIleThrPheS 449730 : TTTCTCCTCGgt.........................agCTTATGAATATAACGTTCA : 449865 387 : erTyrPheMetValIleTyrSer : 393 ||||||||||||||:!!|||||| erTyrPheMetValLeuTyrSer 449866 : GTTATTTCATGGTTCTCTATTCT : 449888 vulgar: CbirOr318 337 393 . KQ414815.1 449617 449888 + 121 M 30 90 G 1 0 M 11 33 5 0 2 I 0 102 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 449618 449888 121 + . gene_id 6 ; sequence CbirOr318 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 449618 449740 . + . KQ414815.1 exonerate:protein2genome:local exon 449618 449740 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local splice5 449741 449742 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 449741 449846 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 449845 449846 . + . intron_id 0 ; splice_site "aG" KQ414815.1 exonerate:protein2genome:local cds 449847 449888 . + . KQ414815.1 exonerate:protein2genome:local exon 449847 449888 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 449618 449888 121 + . alignment_id 6 ; Query CbirOr318 ; Align 449618 338 90 ; Align 449708 369 33 ; Align 449847 380 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr318 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 116 -> 215 Target range: 475476 -> 475773 117 : ArgAsnAlaArgAspPheIleThrIleThrIleThrCysPheTyrLeuIleIleLeuP : 136 ||||||::: |||::: ::!||| .!. ! ! !! !:!!| ArgAsnSerTyrPhePheValGlyAsnIleValThrValLeuValTyrProThrIleP 475477 : agaaattcttattttttcgttgggaatattgtTACAGTACTGGTATACCCAACAATAT : 475534 137 : heValThrValValPheLeuTrpProAsn<->IleLeuAsnIleValMetProLeuAs : 154 ||..!! !:!!:!!.!!|||!:: !!::! ||||||:!! !:!!:!:|||||||| heThrMetIleLeuLeuLeuPheSerSerLysIleLeuAspSerLeuLeuProLeuAs 475535 : TCACCATGATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTACCCCTGAA : 475591 155 : nGluSerArgArgSerArgGlnPheProAspAlaMetGluTyrPheIleAspGlnGlu : 173 ||||||||||! !||| !!....!. :::||||||||||||::::!!:!! nGluSerArgProSerTrpSerLeu---IleArgIleGluTyrPheIleAsnGluGln 475592 : CGAGTCTCGTCCTAGCTGGTCTCTG---AtacgaatagaatatttcataaacGAACAG : 475645 174 : LysTyrIleTyrLeuLeuThrPheTyrSerValValIleAlaPheValThrIleSerV : 193 ||||||.!!|||||| !..!.!!|||..!..!|||! !.!!:!! ! !!!!. LysTyrPheTyrLeuSerValIleTyrGlnThrValThrIleLeuLeuPheGlyThrT 475646 : AAATACTTTTATCTGAGCGTGATCTATCAGACTGTAACGATCCTTCTGTTTGGTACCA : 475705 194 : alValLeuSerIleGluAlaPheSerValLeuHisIleHisHisIleCysAlaMetPh : 212 .! !:!!:!!! !||||||.!.! !..!:!! :!:!!.||| ! ::::::|| hrTyrValAlaThrGluAlaIlePheThrMetTrpLeuGlnHisCysIleSerLeuPh 475706 : CGTACGTAGCAACTGAAGCAATATTTACCATGTGGTTGCAACATTGCATaagtttatt : 475762 213 : eGlnIleVal : 215 |:::|||||| eGluIleVal 475763 : tgaaattgtt : 475773 vulgar: CbirOr318 116 215 . KQ414815.1 475476 475773 + 115 M 29 87 G 0 3 M 17 51 G 1 0 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475477 475773 115 + . gene_id 7 ; sequence CbirOr318 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475477 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475477 475773 . + . insertions 3 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 475477 475773 115 + . alignment_id 7 ; Query CbirOr318 ; Align 475477 117 87 ; Align 475567 146 51 ; Align 475618 164 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr318 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 335 -> 388 Target range: 454307 -> 454466 336 : CysSerThrArgTrpTyrAlaThrProValTyrValGlnLysTyrLeuLeuLeuIleM : 355 |||!:!:!!!.!||||||! !..!|||:!! !!!.!!:!|||! ! !|||||||||: CysAsnSerHisTrpTyrAspValProLeuAspAlaArgLysLeuTyrLeuLeuIleL 454308 : TGCAATTCACACTGGTACGATGTTCCTCTTGATGCTCGAAAGTTGTACCTACTCATTC : 454365 356 : etCysArgSerMetLysThrSerSerIleLeuValGlyHisIlePheValProSerLe : 374 !! ||||||||||||!:!||||||.!!! !:!!..! !!:!!!:!||| !!||||| euGlnArgSerMetLysSerSerSerPheSerIleSerAspLeuTyrValSerSerLe 454366 : TGCAACGAAGTATGAAAAGCTCCTCGTTCTCCATATCCGATTTATACGTTTCGTCGTT : 454422 375 : uGlnGlyTyrAlaThrLeuIleSerSerSerLeuSerTyrPhe : 388 ||||||| ::!.!!:!!! !..!! ! !!|||!!!:!!!:! uGlnGlyLeuSerAlaValThrGluPheProLeu***HisTyr 454423 : ACAGGGACTAAGCGCGGTAACAGAATTTCCCTTGTGACATTAT : 454466 vulgar: CbirOr318 335 388 . KQ414815.1 454307 454466 + 104 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 454308 454466 104 + . gene_id 8 ; sequence CbirOr318 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 454308 454466 . + . KQ414815.1 exonerate:protein2genome:local exon 454308 454466 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 454308 454466 104 + . alignment_id 8 ; Query CbirOr318 ; Align 454308 336 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr326 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 125 -> 213 Target range: 481971 -> 482235 126 : LeuThrAlaLeuSerAlaSerPheIlePheAlaValLeuValAsnGlnPheCysProG : 145 :::|||||||||! ! ! !!! :!:!!. !:!!:!!:!! !!!..!.! ! IleThrAlaLeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerP 481972 : attacagcGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTT : 482029 146 : lyIlePheAspValIleLeuSerIleAsnLysSerArgSerHisHisLeuTyrLeuLy : 164 !:!!.!.|||||||||:!! !!:!!|||:!!!!!|||!!!|||!!.!!! :!!.. heValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSe 482030 : TCGTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATC : 482086 165 : sMetGluTyrPheLeuAspGlnGluLysTyrLeuTyrPheIleLeuLeuHisIleSer : 183 !||||||||||||:!!||||||:!!||||||! ! !|||||| !!!!||| !!! rMetGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrp 482087 : AATGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGG : 482143 184 : LeuAlaIleSerIleAlaValAlaValLeuIleAlaIleGlyThrMetPheIleAlaT : 203 !!!:!!.!! !:!!!.!!.!.!!:!!:!!:!!!.!|||! !|||:!!.!!:!! !! PheSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetT 482144 : TTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGT : 482203 204 : yrLeuGlnHisThrCysGlyMetPheArgIle : 213 ::|||:!!|||.!!....!!:!!|||! !:!! rpLeuGluHisAlaAlaSerLeuPheThrLeu 482204 : GGCTTGAACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: CbirOr326 125 213 . KQ414815.1 481971 482235 + 149 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481972 482235 149 + . gene_id 1 ; sequence CbirOr326 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481972 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481972 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481972 482235 149 + . alignment_id 1 ; Query CbirOr326 ; Align 481972 126 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr326 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 122 -> 213 Target range: 485653 -> 485926 123 : ThrThrValLeuThrAlaLeuSerAlaSerPheIlePheAlaValLeuValAsnGlnP : 142 !.!!:!:!!:!!.!!!.!:!!! !!.! !!! :!!.!!!.!:!!:!!:!!..! !| AsnSerIleIleAlaValIleIleGlyProSerLeuLeuValLeuIleLeuGlyIleP 485654 : AACAGTATTATTGCAGTAATTATCGGTCCATCGTTACTTGTGCTGATTCTTGGTATAT : 485711 143 : heCysProGlyIlePheAspValIleLeuSerIleAsnLysSerArgSerHisHisLe : 161 || ! !.!!|||.!.|||:!!:!::!! !!:!:||| ! !!!||| !!!.. :! heAsnAsnSerIleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIl 485712 : TTAACAACAGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGAT : 485768 162 : uTyrLeuLysMetGluTyrPheLeuAspGlnGluLysTyrLeuTyrPheIleLeuLeu : 180 ! !:!!!!. !|||:!!|||:!!||||||:!!||||||!!!||| !||| ! ! eProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAla 485769 : TCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCA : 485825 181 : HisIleSerLeuAlaIleSerIleAlaValAlaValLeuIleAlaIleGlyThrMetP : 200 |||:!! !||| !:!!! !|||!.!!.! !||||||:!!::! :::. HisValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuI 485826 : CATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaa : 485885 201 : heIleAlaTyrLeuGlnHisThrCysGlyMetPheArgIle : 213 ..:::||| :!!|||||||||||||||:!!!:!! !||| leMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIle 485886 : ttatggCGATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr326 122 213 . KQ414815.1 485653 485926 + 147 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485654 485926 147 + . gene_id 2 ; sequence CbirOr326 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485654 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485654 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485654 485926 147 + . alignment_id 2 ; Query CbirOr326 ; Align 485654 123 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr326 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 133 -> 222 Target range: 464597 -> 464936 134 : IlePheAlaValLeuValAsnGlnPheCysProGlyIlePheAspValIleLeuSerI : 153 |||.!. !:!!! !:!! !:!! ! ! |||! !|||.!!||||||:!! ! !!: IleLeuPheIleCysLeuLeuGluValLeuProAspIleLeuAspValValAlaProL 464598 : ATACTGTTCATCTGTTTACTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCC : 464655 154 : leAsnLysSerArgSerHisHisLeuTyrLeuLysMetGluTyrPheLeuAspGlnGl : 172 !!|||:!!||||||||||||!!.! !! :!!! !|||!:!|||:!! !.!... euAsnGluSerArgSerHisGlnTyrLeuIleThrAlaGluPhePheIleThrAspSe 464656 : TCAATGAATCTCGTTCTCATCAATACTTAATTACCGCGGAATTTTTCATCACTGATAG : 464712 173 : uLysTyrLeuTyrPheIle<->LeuLeuHisIleSerLeuAlaIleSerIleAlaVal : 190 ...! !|||.!!:!! ! !:!! !! ..!:!!.!!:!!! !!!:!.!||| rSerProAsnTyrIleValThrCysValGlyThrAspIleThrLeuIleMetGlyVal 464713 : TTCGCCGAATTATATCGTAACTTGTGTTGGTACGGATATTACTCTTATCATGGGAGTC : 464769 191 : AlaValLeuIleAlaIleGlyThrMetPheIleAlaTyrLeuGlnHisThrCysGlyM : 210 .!!..!:!!|||||| !! !|||.!. !.!! !! |||||||||! !|||!.!| ThrThrIleIleAlaSerGluThrPheThrPheLeuLeuLeuGlnHisIleCysAlaM 464770 : ACGACAATAATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAA : 464829 211 : etPheArgIleAla{Se} >>>> Target Intron 1 >>>> {r}TyrArgIl : 218 |||||!:!|||.!!{!!} 69 bp {!}|||||||| etPheLysIleThr{Cy}++ ++{s}TyrArgIl 464830 : TGTTCAAAATCACA{TG}gt.........................ag{C}TATCGTAT : 464922 219 : eGluTyrAlaMet : 222 |:!!||||||!!: eGlnTyrAlaIle 464923 : ACAATATGCGATC : 464936 vulgar: CbirOr326 133 222 . KQ414815.1 464597 464936 + 116 M 45 135 G 0 3 M 36 108 S 0 2 5 0 2 I 0 65 3 0 2 S 1 1 M 7 21 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464598 464936 116 + . gene_id 3 ; sequence CbirOr326 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 464598 464845 . + . KQ414815.1 exonerate:protein2genome:local exon 464598 464845 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 464846 464847 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 464846 464914 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 464913 464914 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 464915 464936 . + . KQ414815.1 exonerate:protein2genome:local exon 464915 464936 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464598 464936 116 + . alignment_id 3 ; Query CbirOr326 ; Align 464598 134 135 ; Align 464736 179 108 ; Align 464916 216 21 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr325PI(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 122 -> 212 Target range: 448028 -> 448298 123 : ThrAlaAlaLeuLeuPheGlyIleIleLysProAlaPheTrpAlaIleGlnIleAlaI : 142 ||| :::::!:!!|||!.!:!: ! ! !::!||| !:!!:!!.!!!.!: ThrIleSerValValPheAlaLeuSerLeuIleSerPheThrLeuValGluPheValV 448029 : acaatttcagtGGTGTTTGCCTTGTCTTTAATTAGCTTTACCTTGGTTGAGTTCGTGG : 448086 143 : leProTyrLeuAspAsnValThrProIleAsnGlyCysArgProHisArgLeuTyrIl : 161 !! :::|||||| :::! !|||!!:|||! !! !! !! !|||..!||| !.! alHisPheLeuAspIleLeuMetProMetAsnValSerThrArgHisGluLeuProPh 448087 : TAcattttctcgatattttaATGCCAATGAACGTATCTACACGGCACGAGCTACCCTT : 448143 162 : eAlaValGluTyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMet : 180 ! !:!!:!!! !||| !||||||!!:|||!:!!:!:!! !||||||:!! !:!! eLeuIleGlnCysPheCysAspGlnAspLysPhePheHisTyrIleLeuValPheLeu 448144 : CCTAATTCAATGTTTCTGTGATCAAGATAAATTCTTCCACTATATATTAGTTTTCTTG : 448200 181 : AsnAlaAlaLeuPheIleGlyIleLeuSerLeuMetAlaSerAlaThrLeuMetLeuM : 200 ! !!.! ! !.!!:!:||| ! ! !:!!:!:|||!!!.!!||| ! |||! IleValLeuThrIleLeuGlyGlySerValValLeuAlaThrThrThrThrTyrLeuI 448201 : ATCGTTCTCACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAACGACTTACTTGA : 448260 201 : etPhePheGlnHisAlaCysGlyMetPheLysIleAla : 212 !:||| !||||||..!||||||:!!|||||||||||| lePheSerGlnHisCysCysGlyLeuPheLysIleAla 448261 : TATTCAGTCAACATTGTTGTGGATTGTTCAAAATTGCA : 448298 vulgar: CbirOr325PI(F) 122 212 . KQ414815.1 448028 448298 + 152 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448029 448298 152 + . gene_id 1 ; sequence CbirOr325PI(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448029 448298 . + . KQ414815.1 exonerate:protein2genome:local exon 448029 448298 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448029 448298 152 + . alignment_id 1 ; Query CbirOr325PI(F) ; Align 448029 123 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr325PI(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 144 -> 211 Target range: 485725 -> 485926 145 : LeuAspAsnValThrProIleAsnGlyCysArgProHisArgLeuTyrIleAlaValG : 164 ||||||! !:!!! !|||:!:||| ! !||||||!..! !:!! !||| ! !| LeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnSerG 485726 : CTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACTCGG : 485783 165 : luTyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnAlaAl : 183 ||:!!|||:!!||||||:!!||||||!:!||| !||| ! !|||:!: ! ! luHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLeuPh 485784 : AACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCTCTT : 485840 184 : aLeuPheIleGlyIleLeuSerLeuMetAlaSerAlaThrLeuMetLeuMetPhePhe : 202 !:!!.!!|||||| :!! !|||:!:::!::: |||:::::: !.!..!. eValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIleIle 485841 : CGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATAATA : 485897 203 : GlnHisAlaCysGlyMetPheLysIle : 211 ||||||.!!||||||:!!!:!! !||| GlnHisThrCysGlyLeuTyrThrIle 485898 : CAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr325PI(F) 144 211 . KQ414815.1 485725 485926 + 140 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485726 485926 140 + . gene_id 2 ; sequence CbirOr325PI(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485726 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485726 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485726 485926 140 + . alignment_id 2 ; Query CbirOr325PI(F) ; Align 485726 145 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr325PI(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 144 -> 211 Target range: 482034 -> 482235 145 : LeuAspAsnValThrProIleAsnGlyCysArgProHisArgLeuTyrIleAlaValG : 164 |||||| !:!!..!|||:!!|||! ! !||| !!|||!:!!!! :!!:!!:!!| LeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMetG 482035 : CTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGG : 482092 165 : luTyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnAlaAl : 183 |||||||||||||||||:!!||||||! ! !!||| !.!!|||..! !:! luTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSe 482093 : AGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTC : 482149 184 : aLeuPheIleGlyIleLeuSerLeuMetAlaSerAlaThrLeuMetLeuMetPhePhe : 202 !!!!.!!:!!! ! ! !! !:!!:!:!.!! !! !||||||!!::!!|||!::.!! rPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeu 482150 : CTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTT : 482206 203 : GlnHisAlaCysGlyMetPheLysIle : 211 :!!||||||....!!:!!|||! :!! GluHisAlaAlaSerLeuPheThrLeu 482207 : GAACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: CbirOr325PI(F) 144 211 . KQ414815.1 482034 482235 + 122 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482035 482235 122 + . gene_id 3 ; sequence CbirOr325PI(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482035 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 482035 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482035 482235 122 + . alignment_id 3 ; Query CbirOr325PI(F) ; Align 482035 145 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr323PC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 169 Query range: 235 -> 338 Target range: 458065 -> 458675 236 : ValIleSerMetThrIleAsnMetValArgLeuPheGlnAlaIleGluLeuHisIleS : 255 ..!||||||!!: !:!: ! !||| :!!!.!|||! !:!!.!.! !! ThrIleSerIleHisLeuValSerGlnLeuLeuGluGluValIleAlaMetGluAsnM 458066 : acAATTTCTATTCATTTGGTATCTCAGTTACTCGAAGAGGTTATAGCAATGGAAAACA : 458123 256 : erAsnAspIlePheValSerAlaMetTyrValPheThrHisPheLeuTyrValPheTr : 274 !!!.!!::!:.!.!.!:!! !:!: !:!!.!!!:!||||||||||||..!||| etLysGluLeuLeuAlaAlaMetLeuLeuMetIleSerHisPheLeuTyrThrPheLe 458124 : TGAAGGAGCTGCTAGCTGCTATGCTACTCATGATCAGTCACTTCCTTTACACATTTCT : 458180 275 : pValAsnTyrPheGlyGlnIleLeuLeuAspHisSerGluThrValTyrGluAla{Th : 293 !!.!|||||| !|||||||||:!!:!!||||||||| !|||!:!!!: !{|| uAlaAsnTyrAlaGlyGlnIleValMetAspHisSerIleAspValPheAspLys{Th 458181 : GGCGAACTATGCCGGGCAAATCGTGATGGATCACAGTATCGACGTTTTCGATAAA{AC : 458237 294 : } >>>> Target Intron 1 >>>> {r}TyrSerAlaArgTrpTyrMetAlaP : 302 } 304 bp {|}|||! ! !! !|||||| |||| }++ ++{r}TyrLeuIleProTrpTyrArgAlaP 458238 : }gt.........................ag{A}TACTTGATTCCATGGTACCGTGCTC : 458568 303 : roLeuHisSerGlnLysLeuLeuLeuPheIleLeuGlnArgSerSerLysAlaCysAs : 321 |||||!..! !||||||! !||||||||||||! !:!!||||||!.!!:!!.! !!:: roLeuArgIleGlnLysTyrLeuLeuPheIleSerGluArgSerLysArgValSerSe 458569 : CATTACGAATACAAAAGTATCTCTTGTTCATATCAGAACGCAGCAAAAGAGTGAGTTC : 458625 322 : nPheSerValPheSerGlyValValIleAlaSerMetAspGlyPheAlaSer : 338 !!!.!!!:!!!:! |||:!!:!!|||||||||...::: ||||||:!! rLeuCysMetTyr---GlyMetIleIleAlaSerPheGluPhePheAlaThr 458626 : CTTGTGCATGTAT---GGCATGATCATTGCatccttcgaatttttcgccaCG : 458675 vulgar: CbirOr323PC 235 338 . KQ414815.1 458065 458675 + 169 M 57 171 S 0 2 5 0 2 I 0 300 3 0 2 S 1 1 M 32 96 G 1 0 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458066 458675 169 + . gene_id 1 ; sequence CbirOr323PC ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 458066 458238 . + . KQ414815.1 exonerate:protein2genome:local exon 458066 458238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 458239 458240 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 458239 458542 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 458541 458542 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458543 458675 . + . KQ414815.1 exonerate:protein2genome:local exon 458543 458675 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 458066 458675 169 + . alignment_id 1 ; Query CbirOr323PC ; Align 458066 236 171 ; Align 458544 294 96 ; Align 458640 327 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr323PC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 88 -> 215 Target range: 456822 -> 457417 89 : ValLysLeuLeuLeuGluGlnIleAsnTyrAspCysIleAlaIleThrAspSerArgG : 108 :!!::! !:!!! !!!:.!.||| ! !!|||!! ! !:!!:!:! !:!!! !..!| IleArgGluIleTyrAspAsnIleAlaAspAspTrpLysSerLeuLysAsnMetGluG 456823 : ATACGGGAGATTTACGACAATATCGCTGACGATTGGAAATCATTGAAGAACATGGAAG : 456880 109 : luLeuGluIleIleGlnLysTyrAlaSerLysGlyLysPheTyrThrIleTyrSerAl : 127 ||:!!|||||||||:::|||||||||!:! |||!:! !:!|||:!! ! !|| luIleGluIleIleArgLysTyrAlaAsnGlyGlyArgArgPheThrLeuAlaIleAl 456881 : AAATCGagattattcgaaaatatgcGAACGGTGGCAGGAGATTTACACTTGCAATAGC : 456937 128 : a{L} >>>> Target Intron 1 >>>> {eu}PheMetTyrIleThrThrSer : 135 |{:} 214 bp {!!}! !! ||| ! !.!! ! a{I}++ ++{le}SerThrTyrCysGlyAlaLeu 456938 : A{A}gt.........................ag{TT}TCTACTTATTGTGGCGCACTG : 457175 136 : MetPheIlePheSerLeuCysIleProAspIleLeuAsnPheValAlaProLeuGluG : 155 :!:.!!! ! ! !! ! !.!!||| :!!|||:!!.!!|||!.!||||||.!.| ValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnG 457176 : GTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACG : 457235 156 : luProArgLeuArgGluLeuProThrProValAspCysPheLeuAspGlnGlnGlnPh : 174 || !!|||! ! !!|||||| ! ! !!!.!!!:! !|||:!!|||..!:!!:!!!: luSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTy 457236 : AATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTA : 457292 175 : ePheTyrPheIleValSerAspPheAlaLeuIleAlaLeuIleGlyMetThrThrPhe : 193 !.!.:!!!:!|||:!!:!! !!.!! ! ! ! !||||||!.! ||||||!!. rMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeu 457293 : TATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTA : 457349 194 : IleAlaThrGluThrMetPheMetMetPheIleLeuHisAlaCysGlyLeuPheAlaI : 213 ! !|||!.!|||:!!:!:.!!!!:! ! !:!!||||||!.!|||||||||||| !: ThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysL 457350 : ACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGC : 457409 214 : leAlaArg : 215 !!.!!||| euThrArg 457410 : TTACTAGG : 457417 vulgar: CbirOr323PC 88 215 . KQ414815.1 456822 457417 + 162 M 39 117 S 0 1 5 0 2 I 0 210 3 0 2 S 1 2 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 456823 457417 162 + . gene_id 2 ; sequence CbirOr323PC ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 456823 456940 . + . KQ414815.1 exonerate:protein2genome:local exon 456823 456940 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 456941 456942 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 456941 457154 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457153 457154 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457155 457417 . + . KQ414815.1 exonerate:protein2genome:local exon 457155 457417 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 456823 457417 162 + . alignment_id 2 ; Query CbirOr323PC ; Align 456823 89 117 ; Align 457157 129 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr323PC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 142 -> 214 Target range: 448082 -> 448298 143 : IleProAspIleLeuAsnPheValAlaProLeuGluGluProArgLeuArgGluLeuP : 162 :!: ! ...|||:::...::: !|||:!!.!.! ! !!! !! !!.!||||||| ValValHisPheLeuAspIleLeuMetProMetAsnValSerThrArgHisGluLeuP 448083 : GTGGTAcattttctcgatattttaATGCCAATGAACGTATCTACACGGCACGAGCTAC : 448140 163 : roThrProValAspCysPheLeuAspGlnGlnGlnPhePheTyrPheIleValSerAs : 181 || !! !:!!.!.||||||! !||||||.!.:!!||||||:!!!:!|||:!! ! roPheLeuIleGlnCysPheCysAspGlnAspLysPhePheHisTyrIleLeuValPh 448141 : CCTTCCTAATTCAATGTTTCTGTGATCAAGATAAATTCTTCCACTATATATTAGTTTT : 448197 182 : pPheAlaLeuIleAlaLeuIleGlyMetThrThrPheIleAlaThrGluThrMetPhe : 200 !!!. !:!!:!!.!!:!!:!:||| !:!..! ! :!!|||||| !|||! !:! eLeuIleValLeuThrIleLeuGlyGlySerValValLeuAlaThrThrThrThrTyr 448198 : CTTGATCGTTCTCACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAACGACTTAC : 448254 201 : MetMetPheIleLeuHisAlaCysGlyLeuPheAlaIleAla : 214 :!!!!:|||! !! !|||..!|||||||||||| !|||||| LeuIlePheSerGlnHisCysCysGlyLeuPheLysIleAla 448255 : TTGATATTCAGTCAACATTGTTGTGGATTGTTCAAAATTGCA : 448298 vulgar: CbirOr323PC 142 214 . KQ414815.1 448082 448298 + 136 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448083 448298 136 + . gene_id 3 ; sequence CbirOr323PC ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448083 448298 . + . KQ414815.1 exonerate:protein2genome:local exon 448083 448298 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448083 448298 136 + . alignment_id 3 ; Query CbirOr323PC ; Align 448083 143 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr323PC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 126 -> 215 Target range: 475509 -> 475776 127 : AlaLeuPheMetTyrIleThrThrSerMetPheIlePheSerLeuCysIleProAspI : 146 .!!:!!.!.:!:||| !|||! !! !! .!.|||!!. !|||! ! !! ! | ThrValLeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerSerLysI 475510 : ACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGTCTAAGA : 475567 147 : leLeuAsnPheValAlaProLeuGluGluProArgLeuArgGluLeuProThrProVa : 165 |||||:!!! !:!! !||||||.!.||| !!|||! !!!! !! !! !! :: leLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleArgIl 475568 : TCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaat : 475624 166 : lAspCysPheLeuAspGlnGlnGlnPhePheTyrPheIleValSerAspPheAlaLeu : 184 :::: |||:::::::!!|||:!!!:!||||||.!.! !|||! ! !! .!!:!! eGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrVal 475625 : agaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGTA : 475681 185 : IleAlaLeuIleGlyMetThrThrPheIleAlaThrGluThrMetPheMetMetPheI : 204 ! !|||:!: ! ||||||!:!:!!|||||||||.!!!!:|||! |||!::: ThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrpL 475682 : ACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGGT : 475741 205 : leLeuHisAlaCysGlyLeuPheAlaIleAlaArg : 215 !:! !|||..! ...|||||| |||...||| euGlnHisCysIleSerLeuPheGluIleValArg 475742 : TGCAACATTGCATaagtttatttgaaattgttagG : 475776 vulgar: CbirOr323PC 126 215 . KQ414815.1 475509 475776 + 115 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475510 475776 115 + . gene_id 4 ; sequence CbirOr323PC ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475510 475776 . + . KQ414815.1 exonerate:protein2genome:local exon 475510 475776 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475510 475776 115 + . alignment_id 4 ; Query CbirOr323PC ; Align 475510 127 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 124 -> 255 Target range: 457144 -> 457837 125 : LeuPheThrLeuAlaValTyrSerGlyLeuSerValCysValValIleGlnLeuAlaP : 144 :!!.!!|||:!!:!!..!|||!!!||| ! !||| !..!..!:!:|||||| !| MetIleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheP 457145 : ATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTC : 457202 145 : roAsnPheLeuAspPheValAlaProGlnAsnGluSerArgLeuHisHisIleProIl : 163 ||! !!.||||||.!!|||!.!||| !||||||||||||! ! !.!.:!! !:! roIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrLe 457203 : CGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCT : 457259 164 : eThrAlaGluTyrPheValAspGlnGlnLysCysTyrLeuProIleLeuLeuHisIle : 182 !|||||||||||||||||||||..!:!!|||! ! ! ! !|||:!! !|||||| uThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIle 457260 : TACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATT : 457316 183 : AspValIleAlaValValGlyPheThrThrValMetSerThrGluSerLeuPheAlaA : 202 !..! ! !:!!:!!!.! !||||||:!!! :!!!.!|||||||||.!! !. IleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleT 457317 : ATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAA : 457376 203 : laPheValGlnHisAlaIleGlyMetPheAlaIleAla{Se} >>>> Target In : 215 !! !|||! !|||!.! !|||:!!||| !:!!.!!{||} 303 hrAsnValLeuHisValCysGlyLeuPheLysLeuThr{Se}++ 457377 : CGAACGTACTGCACGTTTGTGGATTGTTCAAGCTTACT{AG}gt.............. : 457419 216 : tron 1 >>>> {r}TyrArgIleGluHisAlaPheAspGluValLeuGlyIleAsn : 229 bp {|}||||||:!!||||||:!!!!.|||.!.||| !..! !!!. ++{r}TyrArgLeuGluHisSerLeuAspHisValThrSerGlnLys 457420 : ...........ag{C}TATAGATTAGAACACTCTTTGGACCACGTTACCTCACAAAAA : 457760 230 : MetProArgLysAsnCysProTyrCysArgLysIleIleAsnAlaIleTyrIleHisL : 249 :!! !!!!! !!. ! !!||| ||| :!:|||.!.|||:!! !!||||||! LeuGlySerThrLysArgThrTyrValArg---LeuIleGluAlaValAsnIleHisA 457761 : TTGGGAAGTACCAAGAGAACGTACGTGAGG---CTGATTGAAGCTGTTAACATACACA : 457817 250 : ysArgAlaIleLysPheVal : 255 :!!:!||| !:!!!!.||| rgLysAlaTyrGluLeuVal 457818 : GAAAAGCTTACGAGTTGGTA : 457837 vulgar: CbirOr320 124 255 . KQ414815.1 457144 457837 + 205 M 90 270 S 0 2 5 0 2 I 0 299 3 0 2 S 1 1 M 24 72 G 1 0 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457145 457837 205 + . gene_id 1 ; sequence CbirOr320 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 457145 457416 . + . KQ414815.1 exonerate:protein2genome:local exon 457145 457416 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 457417 457418 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 457417 457719 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457718 457719 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457720 457837 . + . KQ414815.1 exonerate:protein2genome:local exon 457720 457837 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457145 457837 205 + . alignment_id 1 ; Query CbirOr320 ; Align 457145 125 270 ; Align 457721 216 72 ; Align 457793 241 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 199 Query range: 144 -> 255 Target range: 485719 -> 486531 145 : AsnPheLeuAspPheValAlaProGlnAsnGluSerArgLeuHisHisIleProIleT : 164 !:!.!!||||||.!!:!! !||| !||| ! !!!|||! !!.. |||||||||! SerIleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleA 485720 : AGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAA : 485777 165 : hrAlaGluTyrPheValAspGlnGlnLysCysTyrLeuProIleLeuLeuHisIleAs : 183 .!:!!|||:!!||||||||||||||||||! !!:!! !|||||| ! !|||:!!! snSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValVa 485778 : ACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGT : 485834 184 : pValIleAlaValValGlyPheThrThrValMetSerThrGluSerLeuPheAlaAla : 202 !:!!.!!!.!:!!:!!||| ! !..!:!!:!:||||||||| |||... ||| lLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAla 485835 : TCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCG : 485891 203 : PheValGlnHisAlaIleGlyMetPheAlaIleAla{Se} >>>> Target Intr : 215 .!.:!!||||||.!! !|||:!!!:!.!!|||!.!{.!} 476 bp IleIleGlnHisThrCysGlyLeuTyrThrIleVal{Gl}++ 485892 : ATAATACAGCACACCTGTGGTTTGTATACAATCGTT{GG}gt................ : 485934 216 : on 1 >>>> {r}TyrArgIleGluHisAlaPhe<->AspGluValLeuGlyIleAs : 229 {!}|||||||||!!:|||.!!||| ! .!.:!!! !|||:!!:: ++{y}TyrArgIleAspHisThrPheValAlaAsnIleProGlyLeuSe 485935 : .........ag{C}TATCGTATAGATCACACGTTTGTTGCAAACATACCAGGACTTTC : 486451 230 : nMetProArgLysAsnCysProTyrCysArgLysIleIleAsnAlaIleTyrIleHis : 248 ! !!..!!:!!.. !! ! ! !|||||||||:!!::: !:!: !!:!:||| rProAlaGluArgArgValLeuIleHisArgLysIleValSerLeuValAsnLeuHis 486452 : TCCTGCGGAAAGGAGAGTTCTAATTCACAGAAAAATAGTCTCGCTCGTGAATTTGCAC : 486508 249 : LysArgAlaIleLysPheVal : 255 ||||||!.!! :!!!!.||| LysArgValLysGluLeuVal 486509 : AAAAGAGTCAAGGAGTTAGTA : 486531 vulgar: CbirOr320 144 255 . KQ414815.1 485719 486531 + 199 M 70 210 S 0 2 5 0 2 I 0 472 3 0 2 S 1 1 M 7 21 G 0 3 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485720 486531 199 + . gene_id 2 ; sequence CbirOr320 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 485720 485931 . + . KQ414815.1 exonerate:protein2genome:local exon 485720 485931 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 485932 485933 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 485932 486407 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 486406 486407 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 486408 486531 . + . KQ414815.1 exonerate:protein2genome:local exon 486408 486531 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485720 486531 199 + . alignment_id 2 ; Query CbirOr320 ; Align 485720 145 210 ; Align 486409 216 21 ; Align 486433 223 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 292 -> 378 Target range: 453974 -> 454445 293 : AspLeuGluGluPheIleIleThrThrLeuPheValPheGlyHisValTyrTyrIleP : 312 ||| !..! !.!!:!!:!!! ! !:!!!:!..!! ..! ! !!||| ! AspGluArgIleIleLeuValMetPheMetTyrThrSerAsnMetCysAsnTyrGlyV 453975 : GATGAAAGAATAATTCTTGTAATGTTCATGTATACTTCGAATATGTGTAACTACGGAG : 454032 313 : heLeuGlyAsnTyrThrGlyGlnArgValIleAspTyrSerThrAspIlePheTyrLy : 331 ! ||| !!..!:! !|||||||||:!!||||||:!!|||:!!:!!:!!|||||| ! alLeuThrThrPhePheGlyGlnArgIleIleAspHisSerSerAsnValPheTyrAs 454033 : TATTAACAACATTTTTTGGACAAAGAATAATTGACCATAGTTCGAACGTTTTCTATGA : 454089 332 : s{Th} >>>> Target Intron 1 >>>> {r}TyrMetSerGlnTrpTyrAsn : 339 {.!} 213 bp {!}! !! |||!!.||||||:!! p{Al}++ ++{a}CysAsnSerHisTrpTyrAsp 454090 : T{GC}gt.........................ag{A}TGCAATTCACACTGGTACGAT : 454326 340 : GlyProLeuHisAlaGlnLysLeuLeuLeuPheIleMetGlnArgSerMetLysSerT : 359 ! !|||||| !!|||!:!||||||! !|||.!!|||:!!||||||||||||||||||: ValProLeuAspAlaArgLysLeuTyrLeuLeuIleLeuGlnArgSerMetLysSerS 454327 : GTTCCTCTTGATGCTCGAAAGTTGTACCTACTCATTCTGCAACGAAGTATGAAAAGCT : 454386 360 : hrValMetCysLeuGlyAsnLeuPheValProSerLeuGluGlyPheAlaThrIleTh : 378 !! !.!.! !:!!..!:!!|||!:!||| !!||||||:!!|||.!.::!.!!:!!|| erSerPheSerIleSerAspLeuTyrValSerSerLeuGlnGlyLeuSerAlaValTh 454387 : CCTCGTTCTCCATATCCGATTTATACGTTTCGTCGTTACAGGGACTAAGCGCGGTAAC : 454443 379 : r : 378 | r 454444 : A : 454445 vulgar: CbirOr320 292 378 . KQ414815.1 453974 454445 + 146 M 39 117 S 0 2 5 0 2 I 0 209 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 453975 454445 146 + . gene_id 3 ; sequence CbirOr320 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 453975 454093 . + . KQ414815.1 exonerate:protein2genome:local exon 453975 454093 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 454094 454095 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 454094 454306 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 454305 454306 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 454307 454445 . + . KQ414815.1 exonerate:protein2genome:local exon 454307 454445 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 453975 454445 146 + . alignment_id 3 ; Query CbirOr320 ; Align 453975 293 117 ; Align 454308 333 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 125 -> 213 Target range: 481971 -> 482235 126 : PheThrLeuAlaValTyrSerGlyLeuSerValCysValValIleGlnLeuAlaProA : 145 ...||| ! !:!!||| !!..!:!!! !:!! :!!:!! !!!.:!!:!! ! IleThrAlaLeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerP 481972 : attacagcGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTT : 482029 146 : snPheLeuAspPheValAlaProGlnAsnGluSerArgLeuHisHisIleProIleTh : 164 ! !!|||||| !!:!!!.!|||! !||||||!!!||| !|||!!..!!|||:!!:! heValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSe 482030 : TCGTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATC : 482086 165 : rAlaGluTyrPheValAspGlnGlnLysCysTyrLeuProIleLeuLeuHisIleAsp : 183 ! !|||||||||:!!||||||||||||! !! ||| !||| !!!!||| rMetGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrp 482087 : AATGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGG : 482143 184 : ValIleAlaValValGlyPheThrThrValMetSerThrGluSerLeuPheAlaAlaP : 203 !! ! !:!!|||! ! |||! !:!!:!:.!!! !|||!!!|||.!!!.! !! PheSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetT 482144 : TTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGT : 482203 204 : heValGlnHisAlaIleGlyMetPheAlaIle : 213 :::!!:!!|||||| !.!!:!!|||.!!:!! rpLeuGluHisAlaAlaSerLeuPheThrLeu 482204 : GGCTTGAACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: CbirOr320 125 213 . KQ414815.1 481971 482235 + 143 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481972 482235 143 + . gene_id 4 ; sequence CbirOr320 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481972 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481972 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481972 482235 143 + . alignment_id 4 ; Query CbirOr320 ; Align 481972 126 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 138 -> 213 Target range: 464612 -> 464840 139 : ValIleGlnLeuAlaProAsnPheLeuAspPheValAlaProGlnAsnGluSerArgL : 158 :!!:!!:!!:!! !|||:!!.!!|||||| ! |||||||||! ||||||||||||! LeuLeuGluValLeuProAspIleLeuAspValValAlaProLeuAsnGluSerArgS 464613 : TTACTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATGAATCTCGTT : 464670 159 : euHisHisIleProIleThrAlaGluTyrPheVal<->AspGlnGlnLysCysTyrLe : 176 !|||!!. ! !||||||||||||!:!|||:!! |||.....! ! !|||:! erHisGlnTyrLeuIleThrAlaGluPhePheIleThrAspSerSerProAsnTyrIl 464671 : CTCATCAATACTTAATTACCGCGGAATTTTTCATCACTGATAGTTCGCCGAATTATAT : 464727 177 : uProIleLeuLeuHisIleAspValIleAlaValValGlyPheThrThrValMetSer : 195 ! !! !! !:!! !! |||:!!! ! !:!!:!!||| !!||||||:!!!!::!! eValThrCysValGlyThrAspIleThrLeuIleMetGlyValThrThrIleIleAla 464728 : CGTAACTTGTGTTGGTACGGATATTACTCTTATCATGGGAGTCACGACAATAATTGCC : 464784 196 : ThrGluSerLeuPheAlaAlaPheValGlnHisAlaIleGlyMetPheAlaIle : 213 :!!|||!!!!!! ! ! !!!.:!!|||||| ! !!.!|||||| !||| SerGluThrPheThrPheLeuLeuLeuGlnHisIleCysAlaMetPheLysIle 464785 : TCCGAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAATGTTCAAAATC : 464840 vulgar: CbirOr320 138 213 . KQ414815.1 464612 464840 + 133 M 31 93 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464613 464840 133 + . gene_id 5 ; sequence CbirOr320 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464613 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464613 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464613 464840 133 + . alignment_id 5 ; Query CbirOr320 ; Align 464613 139 93 ; Align 464709 170 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 332 -> 377 Target range: 465779 -> 465914 333 : TyrMetSerGlnTrpTyrAsnGlyProLeuHisAlaGlnLysLeuLeuLeuPheIleM : 352 ||| !!!|||||||||!.. !||||||! !||||||||||||:!!:!!||||||| TyrAspThrGlnTrpTyrArgLeuProLeuProAlaGlnLysLeuValIlePheIleM 465780 : TACGATACGCAATGGTATAGACTTCCTTTACCTGCACAAAAATTAGTGATTTTCATTA : 465837 353 : etGlnArgSerMetLysSerThrValMetCysLeuGlyAsnLeuPheValProSerLe : 371 ||||||||||||||||||||!.!|||.!. :!! !!!!.|||!:!|||||||||! etGlnArgSerMetLysSerAsnValPheThrValCysLysLeuTyrValProSerAr 465838 : TGCAAAGAAGCATGAAAAGTAATGTGTTCACAGTGTGCAAACTCTACGTTCCCTCGCG : 465894 372 : uGluGlyPheAlaThrIle : 377 !:!!||| !!|||! !:!! gGlnGlyValAlaLysVal 465895 : ACAAGGTGTCGCAAAGGTA : 465914 vulgar: CbirOr320 332 377 . KQ414815.1 465779 465914 + 131 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 465780 465914 131 + . gene_id 6 ; sequence CbirOr320 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 465780 465914 . + . KQ414815.1 exonerate:protein2genome:local exon 465780 465914 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 465780 465914 131 + . alignment_id 6 ; Query CbirOr320 ; Align 465780 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 6 -> 49 Target range: 477940 -> 478069 7 : ArgTyrTyrAsnIleHisArgIleLeuLeuSerSerIleGlyLeuTrpProTyrGlnA : 26 !:!|||||||||.!!|||!:!! !||||||!!!:!!||||||||||||||||||!!.: GlnTyrTyrAsnPheHisLysAsnLeuLeuThrAlaIleGlyLeuTrpProTyrHisA 477941 : CAGTATTACAACTTCCACAAGAACCTATTAACGGCAATAGGACTTTGGCCGTACCATA : 477998 27 : spProArgLysLysThrIleGlnArgIleIleSerSerValIleLeuIleSerSerVa : 45 !! !!!:! !:!|||:!!|||!.!! !||| !||| !!|||! !.!!|||! !|| snThrLysPheArgThrLeuGlnAsnSerIleValSerPheIleArgPheSerPheVa 477999 : ACACGAAATTCAGAACATTACAAAACAGTATTGTCAGCTTCATTCGCTTTTCGTTTGT : 478055 46 : lIleValGlnLeu : 49 | !||||||:!! lAlaValGlnVal 478056 : AGCTGTACAGGTA : 478069 vulgar: CbirOr320 6 49 . KQ414815.1 477940 478069 + 110 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 477941 478069 110 + . gene_id 7 ; sequence CbirOr320 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 477941 478069 . + . KQ414815.1 exonerate:protein2genome:local exon 477941 478069 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 477941 478069 110 + . alignment_id 7 ; Query CbirOr320 ; Align 477941 7 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 332 -> 377 Target range: 472704 -> 472839 333 : TyrMetSerGlnTrpTyrAsnGlyProLeuHisAlaGlnLysLeuLeuLeuPheIleM : 352 |||! |||:!!|||||| !..!||||||! !||||||||||||! !||||||| TyrAsnSerGluTrpTyrCysSerProLeuProIleGlnLysLeuLeuHisPheIleM 472705 : TATAATTCTGAATGGTATTGCTCGCCGTTGCCAATACAAAAATTGCTACATTTTATCA : 472762 353 : etGlnArgSerMetLysSerThrValMetCysLeuGlyAsnLeuPheValProSerLe : 371 ||||| !!!!!!!:!!. ...:::... ::: ..! !||||||||||||:! etGlnGlyArgIleAsnLeuAsnIlePhePheMetTyrGlyThrPheValProSerMe 472763 : TGCAGGGAAGGATAAATctgaacatattttttatgtacGGTACATTCGTACCTTCGAT : 472819 372 : uGluGlyPheAlaThrIle : 377 !|||||||||!.!.!!:!! tGluGlyPheGlyAlaVal 472820 : GGAAGGTTTTGGCGCGGTA : 472839 vulgar: CbirOr320 332 377 . KQ414815.1 472704 472839 + 107 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 472705 472839 107 + . gene_id 8 ; sequence CbirOr320 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 472705 472839 . + . KQ414815.1 exonerate:protein2genome:local exon 472705 472839 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 472705 472839 107 + . alignment_id 8 ; Query CbirOr320 ; Align 472705 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 332 -> 377 Target range: 441705 -> 441840 333 : TyrMetSerGlnTrpTyrAsnGlyProLeuHisAlaGlnLysLeuLeuLeuPheIleM : 352 |||! ||| |||||| !! !|||||| !||||||||||||||||||||||||| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 353 : etGlnArgSerMetLysSerThrValMetCysLeuGlyAsnLeuPheValProSerLe : 371 ||..!!:!|||! !! !! ! !||| !|||..!..!:!!|||!.!|||!!!! etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 372 : uGluGlyPheAlaThrIle : 377 !:!!||||||:!!:!!:!! rLysGlyPheSerSerVal 441821 : CAAAGGTTTTTCCTCGGTA : 441840 vulgar: CbirOr320 332 377 . KQ414815.1 441705 441840 + 106 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441840 106 + . gene_id 9 ; sequence CbirOr320 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441706 441840 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441840 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441840 106 + . alignment_id 9 ; Query CbirOr320 ; Align 441706 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 0 -> 49 Target range: 484183 -> 484330 1 : MetAspPheAlaGlyLysArgTyrTyrAsnIleHisArgIleLeuLeuSerSerIleG : 20 |||||||||||||||!..!:!||||||!...!!:!!|||||||||||||||!!!|||| MetAspPheAlaGlySerGlnTyrTyrArgPheAsnArgIleLeuLeuSerThrIleG 484184 : ATGGACTTCGCGGGCAGTCAGTATTATAGATTCAACCGAATACTTCTCTCGACAATTG : 484241 21 : lyLeuTrpProTyrGlnAspProArgLysLysThrIleGlnArgIleIleSerSerVa : 39 |||||! ||||||.!.... !!!:! ! ! !! !.!! !!.!! !.!!! !! !:! lyLeuSerProTyrAsnSerThrLysTyrThrLysPheTrpAsnThrPheIleIleLe 484242 : GTCTTTCACCATACAATTCGACGAAGTACACGAAATTCTGGAACACTTTCATCATTTT : 484298 40 : lIleLeuIleSerSerValIleValGlnLeu : 49 !:!!|||.!!|||.!!:!!.!!||||||:!! uValLeuPheSerGlyIlePheValGlnVal 484299 : AGTCTTATTCTCCGGTATCTTTGTTCAGGTA : 484330 vulgar: CbirOr320 0 49 . KQ414815.1 484183 484330 + 105 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 484184 484330 105 + . gene_id 10 ; sequence CbirOr320 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 484184 484330 . + . KQ414815.1 exonerate:protein2genome:local exon 484184 484330 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 484184 484330 105 + . alignment_id 10 ; Query CbirOr320 ; Align 484184 1 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 332 -> 380 Target range: 449611 -> 449752 333 : TyrMetSerGlnTrpTyrAsnGlyProLeuHisAlaGlnLysLeuLeuLeuPheIleM : 352 ||| !!!:!!||||||.!.!.!|||:!! !!.!||||||:!!! !||||||:!:| TyrTyrThrLysTrpTyrGluAlaProValPheValGlnLysMetTyrLeuPheLeuM 449612 : TACTACACAAAATGGTACGAAGCTCCAGTGTTCGTGCAAAAGATGTACTTGTTCTTGA : 449669 353 : etGlnArgSerMetLysSerThrValMetCysLeuGlyAsnLeuPheValProSerLe : 371 ||! !|||!!!! |||..!..! !!!: !|||||| !!!!:!..!||||||:! etLeuArgThrThrLysAspValLysIleValLeuGly---PheTyrThrProSerIl 449670 : TGCTAAGAACCACAAAAGACGTAAAGATAGTTCTTGGT---TTCTATACCCCATCGAT : 449723 372 : uGluGlyPheAlaThrIleThrSerMet : 380 !|||||||||:!!:!!:!!|||!.!:!: eGluGlyPheSerSerValThrLysLeu 449724 : AGAGGGTTTCTCCTCGGTAACTAAATTA : 449752 vulgar: CbirOr320 332 380 . KQ414815.1 449611 449752 + 104 M 32 96 G 1 0 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 449612 449752 104 + . gene_id 11 ; sequence CbirOr320 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 449612 449752 . + . KQ414815.1 exonerate:protein2genome:local exon 449612 449752 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 449612 449752 104 + . alignment_id 11 ; Query CbirOr320 ; Align 449612 333 96 ; Align 449708 366 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 332 -> 377 Target range: 445817 -> 445952 333 : TyrMetSerGlnTrpTyrAsnGlyProLeuHisAlaGlnLysLeuLeuLeuPheIleM : 352 |||! ||| |||||| !! !|||||| !||||||||||||||||||||||||| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 353 : etGlnArgSerMetLysSerThrValMetCysLeuGlyAsnLeuPheValProSerLe : 371 ||..!!:!|||! !! !! ! !!!: !|||..!..!:!!|||!.!|||!!!! etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 372 : uGluGlyPheAlaThrIle : 377 !:!!||||||:!!:!!:!! rLysGlyPheSerSerVal 445933 : CAAAGGTTTTTCCTCGGTA : 445952 vulgar: CbirOr320 332 377 . KQ414815.1 445817 445952 + 102 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 445952 102 + . gene_id 12 ; sequence CbirOr320 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445818 445952 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445952 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 445952 102 + . alignment_id 12 ; Query CbirOr320 ; Align 445818 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr313PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 188 Query range: 243 -> 346 Target range: 458092 -> 458705 244 : LeuPheGlnValIleThrSerMetThrSerMetAspAspLeuMetArgSerIleValP : 263 |||.!!:!!! !:!!! !:!!||| !!:!||| ! !!:|||:!: !:!!!!::!!. LeuLeuGluGluValIleAlaMetGluAsnMetLysGluLeuLeuAlaAlaMetLeuL 458093 : TTACTCGAAGAGGTTATAGCAATGGAAAACATGAAGGAGCTGCTAGCTGCTATGCTAC : 458150 264 : heValValCysHisLeuIleTyrMetPheLeuThrAsnTyrAlaGlyGlnLysPheIl : 282 !!:!!:!! !!|||!!!:!!|||! ||||||.!!|||||||||||||||! ! !! euMetIleSerHisPheLeuTyrThrPheLeuAlaAsnTyrAlaGlyGlnIleValMe 458151 : TCATGATCAGTCACTTCCTTTACACATTTCTGGCGAACTATGCCGGGCAAATCGTGAT : 458207 283 : eAspHisAlaValAspValTyrGlnLys{Il} >>>> Target Intron 1 >>> : 292 :||||||::!:!!||||||!:!.!.|||{! } 304 bp tAspHisSerIleAspValPheAspLys{Th}++ 458208 : GGATCACAGTATCGACGTTTTCGATAAA{AC}gt........................ : 458241 293 : > {e}CysAsnValArgTrpTyrAsnAlaProLeuArgIleGlnLysHisLeuLeuP : 310 {!}! ! :!!! !||||||..!|||||||||||||||||||||:!!||||||| ++{r}TyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuLeuP 458242 : .ag{A}TACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCTTGT : 458595 311 : heIleMetGlnLysAlaIleLysSerTyrCysMetAspValGlyGlyLeuTyrAsnPr : 329 ||||| :!!:::::!! !!:! ! !! !:!! !:!! !|||:!! !! ! ! heIleSerGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIleAl 458596 : TCATATCAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGC : 458652 330 : oSerLeuGlnGlyPheThrThrLeuAlaSerAlaSerLeuSerTyrPheThr : 346 |||...::: |||...|||:!!.!!!.!:!!!!!||| :::|||::: aSerPheGluPhePheAlaThrValThrLysSerTrpLeu***HisPheSer 458653 : atccttcgaatttttcgccaCGGTAACAAAATCTTGGCtatgacatttttct : 458705 vulgar: CbirOr313PI 243 346 . KQ414815.1 458092 458705 + 188 M 48 144 S 0 2 5 0 2 I 0 300 3 0 2 S 1 1 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458093 458705 188 + . gene_id 1 ; sequence CbirOr313PI ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 458093 458238 . + . KQ414815.1 exonerate:protein2genome:local exon 458093 458238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 458239 458240 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 458239 458542 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 458541 458542 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458543 458705 . + . KQ414815.1 exonerate:protein2genome:local exon 458543 458705 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458093 458705 188 + . alignment_id 1 ; Query CbirOr313PI ; Align 458093 244 144 ; Align 458544 293 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr313PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 90 -> 173 Target range: 457162 -> 457411 91 : TyrMetCysLeuPheIleIleIleCysIleGlnTyrValProCysIleLeuAspValV : 110 ||| !! !.!.:!!|||! ! :!:||| ! !!||| :!!||||||:!!| TyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleV 457163 : TATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTG : 457220 111 : alMetProLeuAsnAsnSerArgArgValAlaLeuLeuPheGlnValGluTyrLeuVa : 129 ||:!:|||||||||.!.||||||! ! !! !|||! !.!! !!.!||||||!!!|| alValProLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheVa 457221 : TGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGT : 457277 130 : lAsnHisGluGluTyrTyrHisValIleGlnLeuHisLeuHisIleGlyLeuLeuVal : 148 |:!! :!!:!!||| ||| !||| !|||:!! !! !!||||||:!! lAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIle 457278 : CGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATC : 457334 149 : AlaAlaThrThrValLeuAlaThrGluSerPheCysLeuThrLeuSerIleHisAlaP : 168 ||||||||||||:!! !|||!.!||||||!!. !:!!||| ! !:!:|||!.!! AlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValC 457335 : GCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTT : 457394 169 : heAlaMetPheLysIle : 173 !!.!:!!||||||:!! ysGlyLeuPheLysLeu 457395 : GTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr313PI 90 173 . KQ414815.1 457162 457411 + 161 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457163 457411 161 + . gene_id 2 ; sequence CbirOr313PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457163 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457163 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457163 457411 161 + . alignment_id 2 ; Query CbirOr313PI ; Align 457163 91 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr313PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 5 -> 174 Target range: 447032 -> 448298 6 : AspHisTyrLysPheAsnArgIlePheLeuSerValIleGlyLeuTrpProHisArgH : 25 !!::!!|||!...!!|||!:! .!!|||!!!:!!:!!||||||||||||:!!!:!. GluTyrTyrSerLeuAsnGlnGlnLeuLeuThrLeuValGlyLeuTrpProTyrLysA 447033 : GAGTACTATAGCCTCAATCAACAGCTTTTGACGTTGGTCGGACTGTGGCCGTACAAGA : 447090 26 : isIleThrLeuArgGlnIleGlnGlyIleIleSerSerValValLeuIleSerValTh : 44 .. !! !|||! ! :!! ! ..!! ! !! ! ! !! !!!!!|||!!!!.! rgTyrLysLeuThrPheLeuTyrAsnThrTyrMetLeuPhePhePheIleThrAlaPh 447091 : GGTACAAGTTGACATTCCTTTACAATACCTACATGCTGTTCTTCTTCATCACCGCTTT : 447147 45 : rSerProGlnLeuIleLysLeuPheThrIleGluTyrAspValThrLeuValLeuArg : 63 !! !! !|||:!!:!! ||||||..! !:!!! !|||!!!|||! ! ! ePheLeuGlnValLeuValLeuPheVal***GlnLeu***CysThrPheValCysTyr 447148 : CTTTCTTCAGGTACTTGTTTTATTCGTGTAACAATTGTGATGCACTTTTGTGTGTTAC : 447204 64 : IleLeuSerSerValLeuProPheLeuLeu{P} >>>> Target Intron 1 >> : 74 :!:!!!..!! ! !!:!! ! :!!! !{!} 759 bp ValPheGluMetPheValIleLysValTyr{T}++ 447205 : GTGTTTGAAATGTTTGTCATTAAGGTCTAT{T}gt....................... : 447240 75 : >> {he}IleValLysTyrValThrPheTyrPheIleThrGluAsnAlaLeuIleTy : 91 {:!}... ...:::::: ||| ......||| :::..!:!!.!! +-{yr}PheAsnAsnPheIleIlePheLeuIlePheThrIleSerValValPheAl 447241 : ..aa{at}ttcaacaattttattatctttctcattttcacaatttcagtGGTGTTTGC : 448047 92 : rMetCysLeuPheIleIleIleCysIleGlnTyrValProCysIleLeuAspValVal : 110 !:!!! !|||.!!! !.!!! !! :!!:!!!:!||| ! ...||||||:::::: aLeuSerLeuIleSerPheThrLeuValGluPheValValHisPheLeuAspIleLeu 448048 : CTTGTCTTTAATTAGCTTTACCTTGGTTGAGTTCGTGGTAcattttctcgatatttta : 448104 111 : MetProLeuAsnAsnSerArgArgValAlaLeuLeuPheGlnValGluTyrLeuValA : 130 ||||||:!!||| |||! !||| !! !|||! !|||! !:!!:!!! !!!! !: MetProMetAsnValSerThrArgHisGluLeuProPheLeuIleGlnCysPheCysA 448105 : ATGCCAATGAACGTATCTACACGGCACGAGCTACCCTTCCTAATTCAATGTTTCTGTG : 448164 131 : snHisGluGluTyrTyrHisValIleGlnLeuHisLeuHisIleGlyLeuLeuValAl : 149 !!!!.!!::!!!:!!:!||| !||| !:!! !||| !:!! ! !:!!:!!!. spGlnAspLysPhePheHisTyrIleLeuValPheLeuIleValLeuThrIleLeuGl 448165 : ATCAAGATAAATTCTTCCACTATATATTAGTTTTCTTGATCGTTCTCACTATTTTGGG : 448221 150 : aAlaThrThrValLeuAlaThrGluSerPheCysLeuThrLeuSerIleHisAlaPhe : 168 !!.!!:!..!|||||||||||| !!!! !! !|||! !!!!||| !|||..!! ! yGlySerValValLeuAlaThrThrThrThrTyrLeuIlePheSerGlnHisCysCys 448222 : TGGAAGTGTGGTATTAGCCACTACAACGACTTACTTGATATTCAGTCAACATTGTTGT : 448278 169 : AlaMetPheLysIleAla : 174 !.!:!!|||||||||||| GlyLeuPheLysIleAla 448279 : GGATTGTTCAAAATTGCA : 448298 vulgar: CbirOr313PI 5 174 . KQ414815.1 447032 448298 + 156 M 68 204 S 0 1 5 0 2 I 0 755 3 0 2 S 1 2 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 447033 448298 156 + . gene_id 3 ; sequence CbirOr313PI ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 447033 447237 . + . KQ414815.1 exonerate:protein2genome:local exon 447033 447237 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 447238 447239 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 447238 447996 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 447995 447996 . + . intron_id 0 ; splice_site "aa" KQ414815.1 exonerate:protein2genome:local cds 447997 448298 . + . KQ414815.1 exonerate:protein2genome:local exon 447997 448298 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 447033 448298 156 + . alignment_id 3 ; Query CbirOr313PI ; Align 447033 6 204 ; Align 447999 75 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr313PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 78 -> 173 Target range: 464552 -> 464840 79 : ValThrPheTyrPheIleThrGluAsnAlaLeuIleTyrMetCysLeuPheIleIleI : 98 :!!:!! ||||||:!:!.! !.!! !.!! ! !:!!.!..!!||| IleSerArgTyrPheLeuAsnIleProValCysPheIleProValIleLeuPheIleC 464553 : ATTTCACGATACTTCCTGAATATTCCAGTGTGCTTCATTCCCGTTATACTGTTCATCT : 464610 99 : leCysIleGlnTyrValProCysIleLeuAspValValMetProLeuAsnAsnSerAr : 117 !! :!!:!! :!!||| !||||||||||||||| !|||||||||.!.||||| ysLeuLeuGluValLeuProAspIleLeuAspValValAlaProLeuAsnGluSerAr 464611 : GTTTACTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATGAATCTCG : 464667 118 : gArgValAlaLeuLeuPheGlnValGluTyrLeuVal<->AsnHisGluGluTyrTyr : 135 | ! ! !! !|||.!! !.!|||!:!!!!:!! :!! !..! ! !!||| gSerHisGlnTyrLeuIleThrAlaGluPhePheIleThrAspSerSerProAsnTyr 464668 : TTCTCATCAATACTTAATTACCGCGGAATTTTTCATCACTGATAGTTCGCCGAATTAT : 464724 136 : HisValIleGlnLeuHisLeuHisIleGlyLeuLeuValAlaAlaThrThrValLeuA : 155 !|||! ! :!! ! ! !!||| !|||:!!:!!!.!!.!||||||:!!:!!| IleValThrCysValGlyThrAspIleThrLeuIleMetGlyValThrThrIleIleA 464725 : ATCGTAACTTGTGTTGGTACGGATATTACTCTTATCATGGGAGTCACGACAATAATTG : 464784 156 : laThrGluSerPheCysLeuThrLeuSerIleHisAlaPheAlaMetPheLysIle : 173 ||:!!|||!!!||| !!!! !||| ! !||| !! !||||||||||||||| laSerGluThrPheThrPheLeuLeuLeuGlnHisIleCysAlaMetPheLysIle 464785 : CCTCCGAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAATGTTCAAAATC : 464840 vulgar: CbirOr313PI 78 173 . KQ414815.1 464552 464840 + 120 M 51 153 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464553 464840 120 + . gene_id 4 ; sequence CbirOr313PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464553 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464553 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464553 464840 120 + . alignment_id 4 ; Query CbirOr313PI ; Align 464553 79 153 ; Align 464709 130 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr321PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 374 Query range: 0 -> 252 Target range: 484183 -> 486516 1 : MetAspPheAspGlySerArgTyrTyrThrThrAsnArgLeuMetLeuSerSerIleG : 20 |||||||||! ||||||!:!||||||! ! !||||||:!!:!:||||||!!!|||| MetAspPheAlaGlySerGlnTyrTyrArgPheAsnArgIleLeuLeuSerThrIleG 484184 : ATGGACTTCGCGGGCAGTCAGTATTATAGATTCAACCGAATACTTCTCTCGACAATTG : 484241 21 : lyLeuTrpProTyrGlnAsnGlyArgTrpSerIleArgIleUnkArgPheCysCysLe : 39 |||||! ||||||.!.::: !!:!!::!!!! ! ! ! !||| ! !|| lyLeuSerProTyrAsnSerThrLysTyrThrLysPheTrpAsnThrPheIleIleLe 484242 : GTCTTTCACCATACAATTCGACGAAGTACACGAAATTCTGGAACACTTTCATCATTTT : 484298 40 : uValCysPheValThrCysValLeuSerGln >>>> Target Intron 1 >>>> : 50 ||||! ||| :!! !!:!!!!! !||| 189 bp uValLeuPhe---SerGlyIlePheValGln++ 484299 : AGTCTTATTC---TCCGGTATCTTTGTTCAGgt......................... : 484330 51 : LeuLeuThrPheValThrPheGluTyrAsnLeuAspLeuLeuLeuGluValLeuSe : 68 |||:!!||||||:!!|||.!.:!! ||| ! ! ! !!!!|||:!!..!||||| ++LeuMetThrPheIleThrIleLysMetAsnAlaLysGlnPheLeuLysThrLeuSe 484331 : agTTAATGACATTCATCACGATAAAAATGAACGCGAAACAATTTCTGAAAACGCTTTC : 484571 69 : rPheThrIleProTyrLeuIleValIleLeuLysTyrValAlaPheCysValLysSer : 87 |!:!! ! ! !! !!! ! !!:!!! !||||||:!!.!!||| !:!! ! ! ! rTyrIleAlaIleSerPheSerPheValSerLysTyrLeuThrPheLeuIleHisPhe 484572 : TTACATTGCAATCTCGTTCTCCTTCGTCTCCAAGTACCTCACGTTTCTCATTCACTTC : 484628 88 : GluSer >>>> Target Intron 2 >>>> MetLysLysIleMetAspMetIl : 97 !!: ! 139 bp !|||:!!.!!:!!!!: || AspVal++ ++GluLysGluPheLeuGluArgIl 484629 : GACGTTgt.........................agGAGAAGGAGTTTTTGGAACGAAT : 484797 98 : eLysTyrAspTrpAsnThrLeuThrAsnSerMetGluTyrLysIleIleHisArgTyr : 116 |:!!:!!|||||||||:!!|||||||||!.! !||| !::!|||||||||..!||| eGluHisAspTrpAsnSerLeuThrAsnLysGluGluLeuArgIleIleHisGluTyr 484798 : TGAACACGATTGGAACTCGTTGACGAATAAAGAGGAGCTTCGGATCATTCACGAATAT : 484854 117 : ThrTyrIleGlyAlaThrTyrAlaGlnLeuPheAla{L} >>>> Target Intro : 129 :!! !:!! ! !..! .!! !! !|||:!!{|} 776 bp SerSerValThrArgValLeuThrIleCysPheSer{L}++ 484855 : TCCAGTGTCACGAGAGTTCTAACCATATGTTTCTCA{T}gt................. : 484896 130 : n 3 >>>> {eu}IleAlaTyrIleValProLeuPheIleThrPheGlyHisPheVa : 144 {||}||| ! ! ! ! !||| ! :!:! !.!!||| ||| ++{eu}IleIleGlyProSerLeuLeuValLeuIleLeuGlyIlePheAs 484897 : ........ag{TA}ATTATCGGTCCATCGTTACTTGTGCTGATTCTTGGTATATTTAA : 485714 145 : lProAspPheLeuAspIleValGluProLeuAsnGlnSerArgSerHisGlnMetIle : 163 ! !..!.!!|||||||||:!! ||||||||| ! !!!||| !!!.. !!!: ! nAsnSerIleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIlePro 485715 : CAACAGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCT : 485771 164 : IleLeuAlaGluTyrPheValAspAsnGluLysTyrPheTyrPheIleAlaLeuHisV : 183 ||| !:!!|||:!!|||||||||.!.:!!|||||||||||| !|||||| !|||| IleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisV 485772 : ATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATG : 485831 184 : alAsnValCysPhePheIlePheGlnIleThrLeuMetSerThrThrSerThrTyrIl : 202 || !:!!! ! !!.!!||| ! !|||..!|||:!:|||||| :: alValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMe 485832 : TTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattat : 485888 203 : eSerTyrIleGlnHisValCysGlyMetPheGlnIleAla{Se} >>>> Target : 216 ::!! |||||||||..!||||||:!!!:! !|||!.!{.!} 47 tAlaIleIleGlnHisThrCysGlyLeuTyrThrIleVal{Gl}++ 485889 : ggCGATAATACAGCACACCTGTGGTTTGTATACAATCGTT{GG}gt............ : 485934 217 : Intron 4 >>>> {r}TyrArgIleGluHisAlaLeuAspSerTyrGluLysGlyA : 230 6 bp {!}|||||||||!!:|||.!!!!!! !:!! !! ! !||| ++{y}TyrArgIleAspHisThrPheValAlaAsnIleProGlyL 485935 : .............ag{C}TATCGTATAGATCACACGTTTGTTGCAAACATACCAGGAC : 486448 231 : snLeuIleSerGluArgArgCysValThrCysAlaArgLeuIleSerAlaIleAspIl : 249 !! ! !:!!||||||||| !:!!! ! ! !!:!:!!:!!||| !:!::!!:! euSerProAlaGluArgArgValLeuIleHisArgLysIleValSerLeuValAsnLe 486449 : TTTCTCCTGCGGAAAGGAGAGTTCTAATTCACAGAAAAATAGTCTCGCTCGTGAATTT : 486505 250 : eHisArgArg : 252 :|||!:!||| uHisLysArg 486506 : GCACAAAAGA : 486516 vulgar: CbirOr321PSE 0 252 . KQ414815.1 484183 486516 + 374 M 42 126 G 1 0 M 6 18 5 0 2 I 0 185 3 0 2 M 40 120 5 0 2 I 0 135 3 0 2 M 39 117 S 0 1 5 0 2 I 0 772 3 0 2 S 1 2 M 86 258 S 0 2 5 0 2 I 0 472 3 0 2 S 1 1 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 484184 486516 374 + . gene_id 1 ; sequence CbirOr321PSE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 484184 484327 . + . KQ414815.1 exonerate:protein2genome:local exon 484184 484327 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local splice5 484328 484329 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 484328 484516 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 484515 484516 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 484517 484636 . + . KQ414815.1 exonerate:protein2genome:local exon 484517 484636 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 484637 484638 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 484637 484775 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 484774 484775 . + . intron_id 1 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 484776 484893 . + . KQ414815.1 exonerate:protein2genome:local exon 484776 484893 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 484894 484895 . + . intron_id 3 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 484894 485669 . + . intron_id 3 KQ414815.1 exonerate:protein2genome:local splice3 485668 485669 . + . intron_id 2 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 485670 485931 . + . KQ414815.1 exonerate:protein2genome:local exon 485670 485931 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 485932 485933 . + . intron_id 4 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 485932 486407 . + . intron_id 4 KQ414815.1 exonerate:protein2genome:local splice3 486406 486407 . + . intron_id 3 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 486408 486516 . + . KQ414815.1 exonerate:protein2genome:local exon 486408 486516 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 484184 486516 374 + . alignment_id 1 ; Query CbirOr321PSE ; Align 484184 1 126 ; Align 484310 44 18 ; Align 484517 50 120 ; Align 484776 90 117 ; Align 485672 130 258 ; Align 486409 217 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr321PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 228 Query range: 124 -> 253 Target range: 457141 -> 457825 125 : GlnLeuPheAlaLeuIleAlaTyrIleValProLeuPheIleThrPheGlyHisPheV : 144 ..!:!!.!!.!!:!! !.!!||| !! ! !!||| !!|||||| !!!..!! SerMetIleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuP 457142 : tcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCT : 457199 145 : alProAspPheLeuAspIleValGluProLeuAsnGlnSerArgSerHisGlnMetIl : 163 !!||| !!.||||||||||||! |||||||||:!!|||||| !! !:!!:!: heProIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTy 457200 : TTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATA : 457256 164 : eIleLeuAlaGluTyrPheValAspAsnGluLysTyrPheTyrPheIleAlaLeuHis : 182 !:!! !||||||||||||||||||! :!!||||||.!.:!!!:!||| ! !||| rLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHis 457257 : CCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCAC : 457313 183 : ValAsnValCysPhePheIlePheGlnIleThrLeuMetSerThrThrSerThrTyrI : 202 :!!! !..!|||.!..!.||| ! !||||||! :!!!.! !||| ! !| IleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuI 457314 : ATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTA : 457373 203 : leSerTyrIleGlnHisValCysGlyMetPheGlnIleAla{Se} >>>> Target : 216 ||!!! !!:!!! !||||||||||||:!!|||:!!:!!.!!{||} 3 leThrAsnValLeuHisValCysGlyLeuPheLysLeuThr{Se}++ 457374 : TAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTTACT{AG}gt........... : 457419 217 : Intron 1 >>>> {r}TyrArgIleGluHisAlaLeuAspSerTyrGluLysGly : 229 03 bp {|}||||||:!!||||||:!!|||||| ! ! ..! ! ++{r}TyrArgLeuGluHisSerLeuAspHisValThrSerGln 457420 : ..............ag{C}TATAGATTAGAACACTCTTTGGACCACGTTACCTCACAA : 457757 230 : AsnLeuIleSerGluArgArgCysValThrCysAlaArgLeuIleSerAlaIleAspI : 249 !!.||| !||| !:!||| |||! !!.!|||||||||..!|||:!!:!!| LysLeuGlySerThrLysArg------ThrTyrValArgLeuIleGluAlaValAsnI 457758 : AAATTGGGAAGTACCAAGAGA------ACGTACGTGAGGCTGATTGAAGCTGTTAACA : 457811 250 : leHisArgArgAla : 253 ||||||||!:!||| leHisArgLysAla 457812 : TACACAGAAAAGCT : 457825 vulgar: CbirOr321PSE 124 253 . KQ414815.1 457141 457825 + 228 M 91 273 S 0 2 5 0 2 I 0 299 3 0 2 S 1 1 M 20 60 G 2 0 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457142 457825 228 + . gene_id 2 ; sequence CbirOr321PSE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 457142 457416 . + . KQ414815.1 exonerate:protein2genome:local exon 457142 457416 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 457417 457418 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 457417 457719 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457718 457719 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457720 457825 . + . KQ414815.1 exonerate:protein2genome:local exon 457720 457825 . + . insertions 0 ; deletions 2 KQ414815.1 exonerate:protein2genome:local similarity 457142 457825 228 + . alignment_id 2 ; Query CbirOr321PSE ; Align 457142 125 273 ; Align 457721 217 60 ; Align 457781 239 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr321PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 189 Query range: 96 -> 214 Target range: 464409 -> 464840 97 : IleLysTyrAspTrpAsnThrLeuThrAsnSerMetGluTyrLysIleIleHisArgT : 116 :!:!:!|||||||||||||||||| !|||!!! ||||||!!.|||:!: ! !:!| ValArgTyrAspTrpAsnThrLeuGlnAsnThrAspGluTyrAsnIleLeuLysLysT 464410 : GTGAGATATGACTGGAACACGCTACAAAACACGGATGAATATAATATTCTGAAAAAGT : 464467 117 : yrThrTyrIleGlyAlaThrTyrAlaGlnLeuPheAla{L} >>>> Target Int : 129 ||||| ! ! !!.!.!! ! ! !:!!:!! ! !{:} 74 bp yrThrGluSerAlaThrLeuValAsnLysIleHisLeu{M}++ 464468 : ATACCGAGAGCGCTACACTTGTTAACAAAATCCACTTA{A}gt............... : 464509 130 : ron 1 >>>> {eu}IleAlaTyrIleValProLeuPheIleThrPheGlyHisPhe : 143 {!!} ! ! ! !||| !||||||||| !!!. !.!. ! ++{et}CysPheIleProValIleLeuPheIleCysLeuLeuGluVal 464510 : ..........ag{TG}TGCTTCATTCCCGTTATACTGTTCATCTGTTTACTCGAAGTA : 464622 144 : ValProAspPheLeuAspIleValGluProLeuAsnGlnSerArgSerHisGlnMetI : 163 :!!||||||.!!||||||:!:|||! !|||||||||:!!||||||||||||||| : LeuProAspIleLeuAspValValAlaProLeuAsnGluSerArgSerHisGlnTyrL 464623 : TTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATGAATCTCGTTCTCATCAATACT : 464682 164 : leIleLeuAlaGluTyrPheValAspAsnGluLysTyrPheTyrPheIleAlaLeuHi : 182 !!||| !||||||!:!|||:!! !:!!.....! !|||.!!:!!.!!! ! euIleThrAlaGluPhePheIleThrAspSerSerProAsnTyrIleValThrCysVa 464683 : TAATTACCGCGGAATTTTTCATCACTGATAGTTCGCCGAATTATATCGTAACTTGTGT : 464739 183 : sValAsnValCysPhePheIlePheGlnIleThrLeuMetSerThrThrSerThrTyr : 201 !! !!..! ! ! !.!!|||.!. !:!!||| !!!:! !.!!:!!..!|||!:! lGlyThrAspIleThrLeuIleMetGlyValThrThrIleIleAlaSerGluThrPhe 464740 : TGGTACGGATATTACTCTTATCATGGGAGTCACGACAATAATTGCCTCCGAAACGTTC : 464796 202 : <->IleSerTyrIleGlnHisValCysGlyMetPheGlnIle : 214 .!!! !! :!:||||||:!!|||!.!||||||:!!||| ThrPheLeuLeuLeuGlnHisIleCysAlaMetPheLysIle 464797 : ACTTTTTTGTTGCTGCAACATATCTGCGCAATGTTCAAAATC : 464840 vulgar: CbirOr321PSE 96 214 . KQ414815.1 464409 464840 + 189 M 32 96 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 72 216 G 0 3 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464410 464840 189 + . gene_id 3 ; sequence CbirOr321PSE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 464410 464506 . + . KQ414815.1 exonerate:protein2genome:local exon 464410 464506 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 464507 464508 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 464507 464580 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 464579 464580 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 464581 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464581 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464410 464840 189 + . alignment_id 3 ; Query CbirOr321PSE ; Align 464410 97 96 ; Align 464583 130 216 ; Align 464802 202 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr321PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 142 -> 214 Target range: 475554 -> 475770 143 : PheValProAspPheLeuAspIleValGluProLeuAsnGlnSerArgSerHisGlnM : 162 ||| ! !! ! .!!|||||| !:!! !|||||||||:!!|||||| !! ! ! PheSerSerLysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpS 475555 : TTCTCGTCTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGT : 475612 163 : etIleIleLeuAlaGluTyrPheValAspAsnGluLysTyrPheTyrPheIleAlaLe : 181 :!:||| |||||||||::::::.!.:!!||||||||||||.!.! !!.!:! erLeuIleArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIl 475613 : CTCTGAtacgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGAT : 475669 182 : uHisValAsnValCysPhePheIlePheGlnIleThrLeuMetSerThrThrSerThr : 200 !:!! !!.!||| .!!.!!:!:||| ! !|||! !:!::!!||| !:!!! ! eTyrGlnThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIle 475670 : CTATCAGACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATA : 475726 201 : TyrIleSerTyrIleGlnHisValCysGlyMetPheGlnIle : 214 !:!! !! !!:::!:|||||| ! ...:::|||:::||| PheThrMetTrpLeuGlnHisCysIleSerLeuPheGluIle 475727 : TTTACCATGTGGTTGCAACATTGCATaagtttatttgaaatt : 475770 vulgar: CbirOr321PSE 142 214 . KQ414815.1 475554 475770 + 131 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475555 475770 131 + . gene_id 4 ; sequence CbirOr321PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475555 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475555 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475555 475770 131 + . alignment_id 4 ; Query CbirOr321PSE ; Align 475555 143 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr321PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 330 -> 385 Target range: 441705 -> 441870 331 : TyrAsnSerLysTrpHisMetMetProLeuHisValGlnLysLeuIleLeuPheIleM : 350 |||||||||! |||:!! :!:|||||| !!.!|||||||||:!!|||||||||| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 351 : etGlnArgSerThrLysAspCysMetLeuLeuValGlyGlyIleTyrValAlaSerLe : 369 ||..!!:!||||||! |||! !:!! !:!!..!||||||!:!!.! !!!!!! etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 370 : uGluGlyLeuAlaThrAlaMetSerAlaSerLeuSerTyrPheMetVal : 385 !:!!|||!!!:!!:!!!.!!!:!!! !! !|||! !:!! :::::: rLysGlyPheSerSerValIleCysLeuLeuLeuPheHisGlnLeuIle 441821 : CAAAGGTTTTTCCTCGGTAATTTGTCTTTTGCTATTTCATCagttaatt : 441870 vulgar: CbirOr321PSE 330 385 . KQ414815.1 441705 441870 + 111 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441870 111 + . gene_id 5 ; sequence CbirOr321PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441706 441870 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441870 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441870 111 + . alignment_id 5 ; Query CbirOr321PSE ; Align 441706 331 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr321PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 330 -> 385 Target range: 445817 -> 445982 331 : TyrAsnSerLysTrpHisMetMetProLeuHisValGlnLysLeuIleLeuPheIleM : 350 |||||||||! |||:!! :!:|||||| !!.!|||||||||:!!|||||||||| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 351 : etGlnArgSerThrLysAspCysMetLeuLeuValGlyGlyIleTyrValAlaSerLe : 369 ||..!!:!||||||! |||! !:!! !:!!..!||||||!:!!.! !!!!!! etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 370 : uGluGlyLeuAlaThrAlaMetSerAlaSerLeuSerTyrPheMetVal : 385 !:!!|||!!!:!!:!!!.!!!:!!! !! !|||! !:!! :::::: rLysGlyPheSerSerValIleCysLeuLeuLeuPheHisGlnLeuIle 445933 : CAAAGGTTTTTCCTCGGTAATTTGTCTTTTGCTATTTCATCagttaatt : 445982 vulgar: CbirOr321PSE 330 385 . KQ414815.1 445817 445982 + 111 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 445982 111 + . gene_id 6 ; sequence CbirOr321PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445818 445982 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445982 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 445982 111 + . alignment_id 6 ; Query CbirOr321PSE ; Align 445818 331 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr321PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 323 -> 373 Target range: 465758 -> 465908 324 : AsnIlePheLeuSerLysThrTyrAsnSerLysTrpHisMetMetProLeuHisValG : 343 |||::: :!!!:! ! !|||:!!!!!:!!|||:!!! :!:||||||! !!.!| AsnLeuArgValAsnPheArgTyrAspThrGlnTrpTyrArgLeuProLeuProAlaG 465759 : aatttgcgtGTTAATTTTAGATACGATACGCAATGGTATAGACTTCCTTTACCTGCAC : 465816 344 : lnLysLeuIleLeuPheIleMetGlnArgSerThrLysAspCysMetLeuLeuValGl : 362 ||||||||:!::!!||||||||||||||||||! !|||..! !:!!!!! !||| ! lnLysLeuValIlePheIleMetGlnArgSerMetLysSerAsnValPheThrValCy 465817 : AAAAATTAGTGATTTTCATTATGCAAAGAAGCATGAAAAGTAATGTGTTCACAGTGTG : 465873 363 : yGlyIleTyrValAlaSerLeuGluGlyLeuAla : 373 ! !:!!|||||| !!|||! !:!!|||:!!||| sLysLeuTyrValProSerArgGlnGlyValAla 465874 : CAAACTCTACGTTCCCTCGCGACAAGGTGTCGCA : 465908 vulgar: CbirOr321PSE 323 373 . KQ414815.1 465758 465908 + 111 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 465759 465908 111 + . gene_id 7 ; sequence CbirOr321PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 465759 465908 . + . KQ414815.1 exonerate:protein2genome:local exon 465759 465908 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 465759 465908 111 + . alignment_id 7 ; Query CbirOr321PSE ; Align 465759 324 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr333CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 6 -> 214 Target range: 447032 -> 448298 7 : GlnTyrPheAsnLeuAsnArgSerLeuLeuLeuValIleGlyLeuTrpProTyrGluG : 26 :!!|||!:!!:!||||||!:!..!|||||| !:!!:!!|||||||||||||||:!!: GluTyrTyrSerLeuAsnGlnGlnLeuLeuThrLeuValGlyLeuTrpProTyrLysA 447033 : GAGTACTATAGCCTCAATCAACAGCTTTTGACGTTGGTCGGACTGTGGCCGTACAAGA : 447090 27 : lnThrAsnLeuAlaArgLeuArgPheIlePhePheCysValAsnLeuMetSerLeuIl : 45 :! !!!.|||.!! !||| ! !! !!:!.!. !! !!!!!!:!!! !.! rgTyrLysLeuThrPheLeuTyrAsnThrTyrMetLeuPhePhePheIleThrAlaPh 447091 : GGTACAAGTTGACATTCCTTTACAATACCTACATGCTGTTCTTCTTCATCACCGCTTT : 447147 46 : eIlePheGlnLeuThrValPheValThrSerArgCysThrProAspValIleIleThr : 64 !.!!.!!|||:!! !|||!!. !!..!! !!:!! ! ! ! !!:!: ! ! ePheLeuGlnValLeuValLeuPheVal***GlnLeu***CysThrPheValCysTyr 447148 : CTTTCTTCAGGTACTTGTTTTATTCGTGTAACAATTGTGATGCACTTTTGTGTGTTAC : 447204 65 : ValLeuSerValValLeuLeuValValIleValLysMetGlnTyrIleLeuPheSerV : 84 |||!!!..!:!! !!:!!:!! !||| ! !|||.!.! ! ||||||.!.!!!| ValPheGluMetPheValIleLysValTyrCysLysPheLeuMetIleLeuLeuArgV 447205 : GTGTTTGAAATGTTTGTCATTAAGGTCTATTGTAAATTTCTGATGATACTCCTAAGAG : 447264 85 : alAsnIleLysIleIleLysGlnLeuLeuValGlnPheArgAsnIleTyrGlyLysLe : 103 ||! !:::::: ::::::||| ! !!!. !.!.! !! ! !:!!|| alIleLeuArg***AsnPheGluMetLeuProValLeuLeuGlnAsnCysPheGluLe 447265 : TTATTTtgagatgaaattttgaaatgttgCCGGTGTTATTGCAAAACTGTTTCGAGCT : 447321 104 : uLysAspGluAsnGlu{Il} >>>> Target Intron 1 >>>> {e}AlaIle : 111 |||| !! !|||...{||} 642 bp {|} ||| uLysIleGlyAsnSer{Il}-- ++{e}PheIle 447322 : TAAGATTGGGAATAGT{AT}tg.........................ag{a}tttatt : 447987 112 : AlaGluLysTyrAsnTyrLysAlaArgArgTyrThrAlaThrPheIleMetIleAlaV : 131 ||| ...:::||| |||... ::!:!: !! AlaLeuAsnPheAsnAsnPheIleIlePheLeuIlePheThrIleSerValValPheA 447988 : gctttaaatttcaacaattttattatctttctcattttcacaatttcagtGGTGTTTG : 448047 132 : alCysSerIlePheIlePheIleIleAlaGlnThrTrpIleAspIlePheAspValVa : 150 .!! |||:!!.!!! !|||! !:!:!.!:!! ! !:!! ......|||::::: laLeuSerLeuIleSerPheThrLeuValGluPheValValHisPheLeuAspIleLe 448048 : CCTTGTCTTTAATTAGCTTTACCTTGGTTGAGTTCGTGGTAcattttctcgatatttt : 448104 151 : lLeuGlnIleAsnLysSerArgSerGlnSerLeuLeuIleMetThrGluTyrPheVal : 169 ::!!! !!!:||| !|||! ! !!!!...!|||! !.!!:!:! !:!!! !||| ! uMetProMetAsnValSerThrArgHisGluLeuProPheLeuIleGlnCysPheCys 448105 : aATGCCAATGAACGTATCTACACGGCACGAGCTACCCTTCCTAATTCAATGTTTCTGT : 448161 170 : AspGlnGluLysTyrTyrTyrPheMetLeuLeuHisLeuAsnIleThrValSerIleA : 189 ||||||!!:|||!:!!:!:!!!:!!!:|||:!! !|||! !:!! !..!! !:!:! AspGlnAspLysPhePheHisTyrIleLeuValPheLeuIleValLeuThrIleLeuG 448162 : GATCAAGATAAATTCTTCCACTATATATTAGTTTTCTTGATCGTTCTCACTATTTTGG : 448221 190 : laValPheIlePheValAlaIleGlyThrMetPheIleThrPhePheGlnTyrIleTy : 208 .!! ! !:!: ! :!!|||! ! !|||! !:!:!:! !||| !|||:!! !! lyGlySerValValLeuAlaThrThrThrThrTyrLeuIlePheSerGlnHisCysCy 448222 : GTGGAAGTGTGGTATTAGCCACTACAACGACTTACTTGATATTCAGTCAACATTGTTG : 448278 209 : rGlyLeuPheLysIleAla : 214 !|||||||||||||||||| sGlyLeuPheLysIleAla 448279 : TGGATTGTTCAAAATTGCA : 448298 vulgar: CbirOr333CTE 6 214 . KQ414815.1 447032 448298 + 165 M 102 306 S 0 2 5 0 2 I 0 638 3 0 2 S 1 1 M 105 315 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 447033 448298 165 + . gene_id 1 ; sequence CbirOr333CTE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 447033 447340 . + . KQ414815.1 exonerate:protein2genome:local exon 447033 447340 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 447341 447342 . + . intron_id 1 ; splice_site "TG" KQ414815.1 exonerate:protein2genome:local intron 447341 447982 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 447981 447982 . + . intron_id 0 ; splice_site "ag" KQ414815.1 exonerate:protein2genome:local cds 447983 448298 . + . KQ414815.1 exonerate:protein2genome:local exon 447983 448298 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 447033 448298 165 + . alignment_id 1 ; Query CbirOr333CTE ; Align 447033 7 306 ; Align 447984 110 315 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr333CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 132 -> 213 Target range: 481992 -> 482235 133 : SerIlePheIlePheIleIleAlaGlnThrTrpIleAspIlePheAspValValLeuG : 152 |||:!:!!.|||.!.|||:!:..!!!.! !! !! ! !:!!.!.||||||:!!:!!! SerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValP 481993 : TCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTC : 482050 153 : lnIleAsnLysSerArgSerGlnSerLeuLeuIleMetThrGluTyrPheValAspGl : 171 :!!|||:!!!!!|||!!!!!...!!!!! !:!! ! !|||||||||:!!||||| roLeuAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGl 482051 : CTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCA : 482107 172 : nGluLysTyrTyrTyrPheMetLeuLeuHisLeuAsnIleThrValSerIleAlaVal : 190 |:!!||||||! !|||!!: !!!!|||! ! .!!:!! !! !:!!!.!!.! nGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAla 482108 : GCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCA : 482164 191 : PheIlePheValAlaIleGlyThrMetPheIleThrPhePheGlnTyrIleTyrGlyL : 210 |||.!!|||!.!|||! !|||:!!.!!:!!! !!::.!!:!!:!! ! .!!| ThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerL 482165 : ACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCT : 482224 211 : euPheLysIle : 213 |||||! :!! euPheThrLeu 482225 : TGTTCACCCTT : 482235 vulgar: CbirOr333CTE 132 213 . KQ414815.1 481992 482235 + 120 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481993 482235 120 + . gene_id 2 ; sequence CbirOr333CTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481993 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481993 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481993 482235 120 + . alignment_id 2 ; Query CbirOr333CTE ; Align 481993 133 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr333CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 132 -> 213 Target range: 485683 -> 485926 133 : SerIlePheIlePheIleIleAlaGlnThrTrpIleAspIlePheAspValValLeuG : 152 |||:!!.!!:!:.!.|||:!!!.! ! ! ! !..!|||.!.|||:!!:!!:!!! SerLeuLeuValLeuIleLeuGlyIlePheAsnAsnSerIleLeuAspIleLeuIleP 485684 : TCGTTACTTGTGCTGATTCTTGGTATATTTAACAACAGTATTCTGGACATTTTGATTC : 485741 153 : lnIleAsnLysSerArgSerGlnSerLeuLeuIleMetThrGluTyrPheValAspGl : 171 :!:||| ! !!!||| !!!:!!!!:!!! !|||! :!!|||:!!||||||||||| roLeuAsnTyrThrArgProArgThrIleProIleAsnSerGluHisPheValAspGl 485742 : CTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACTCGGAACATTTTGTCGATCA : 485798 172 : nGluLysTyrTyrTyrPheMetLeuLeuHisLeuAsnIleThrValSerIleAlaVal : 190 |:!!||||||!:!||| !!!: ! !|||:!! !:!! !|||! !|||!.!!.! nGlnLysTyrPheTyrProIleAlaAlaHisValValLeuPheValIleIleGlyAla 485799 : GCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCTCTTCGTCATTATTGGCGCG : 485855 191 : PheIlePheValAlaIleGlyThrMetPheIleThrPhePheGlnTyrIleTyrGlyL : 210 .!.:!!!!.:!!::! :::...:::.!!.!..!.|||:!!! !! !|||| IleValLeuLeuSerThrGluIleLeuIleMetAlaIleIleGlnHisThrCysGlyL 485856 : ATAGTATTACTCAGCaccgaaatattaattatggCGATAATACAGCACACCTGTGGTT : 485915 211 : euPheLysIle : 213 ||!:!! !||| euTyrThrIle 485916 : TGTATACAATC : 485926 vulgar: CbirOr333CTE 132 213 . KQ414815.1 485683 485926 + 116 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485684 485926 116 + . gene_id 3 ; sequence CbirOr333CTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485684 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485684 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485684 485926 116 + . alignment_id 3 ; Query CbirOr333CTE ; Align 485684 133 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr327 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 144 -> 213 Target range: 485719 -> 485926 145 : AlaPheTyrGluValAsnLeuSerIleAsnArgThrArgProProArgLeuGlnIleA : 164 ::!.!! !!::!! :!! !!:!:||| !|||||||||! !! !:!!! ||| SerIleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleA 485720 : AGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAA : 485777 165 : laThrGluAsnIleLeuGlyGluHisAsnPhePheGlnLeuIleLeuLeuHisIleAs : 183 !:!!|||:!!.!!:!!! !:!!!!.!!.!:!||| ! ! !||| ! !|||:!!! snSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValVa 485778 : ACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGT : 485834 184 : pThrAlaIleIleLeuGlyGluIleSerTrpIleAlaMetGlyThrPheMetIleAla : 202 ! ! !:!!|||:!!|||! !||| !! :!!::! ...::::::||| lLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAla 485835 : TCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCG : 485891 203 : TyrLeuGlnHisThrCysGlyMetPheLysIle : 213 :!!|||||||||||||||:!!!:!! !||| IleIleGlnHisThrCysGlyLeuTyrThrIle 485892 : ATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr327 144 213 . KQ414815.1 485719 485926 + 108 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485720 485926 108 + . gene_id 1 ; sequence CbirOr327 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485720 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485720 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485720 485926 108 + . alignment_id 1 ; Query CbirOr327 ; Align 485720 145 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr316 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 176 Query range: 88 -> 259 Target range: 456822 -> 457837 89 : MetArgAspLeuMetGluHisValArgSerAspTrpAsnGluLeuAsnThrMetGlnG : 108 !!:|||!!::!! !!::!!:!! !..!||||||!!...!|||!!.!.!|||:!!| IleArgGluIleTyrAspAsnIleAlaAspAspTrpLysSerLeuLysAsnMetGluG 456823 : ATACGGGAGATTTACGACAATATCGCTGACGATTGGAAATCATTGAAGAACATGGAAG : 456880 109 : luValGluIleIleLysLysTyrSerAlaPheGlyLysLeuIleThrValValAlaTh : 127 ||:!!|||||||||:::||||||::! ! !|||!:! !.!!|||:!!!.! !.! luIleGluIleIleArgLysTyrAlaAsnGlyGlyArgArgPheThrLeuAlaIleAl 456881 : AAATCGagattattcgaaaatatgcGAACGGTGGCAGGAGATTTACACTTGCAATAGC : 456937 128 : r{S} >>>> Target Intron 1 >>>> {er}PheIleTyrLeuCysIleLeu : 135 !{!} 214 bp { !}! !! !|||! ! !! !||| a{I}++ ++{le}SerThrTyrCysGlyAlaLeu 456938 : A{A}gt.........................ag{TT}TCTACTTATTGTGGCGCACTG : 457175 136 : CysValIleValGluGlnIleSerMetAsnLeuTyrLeuAspPheThrThrAlaAlaA : 155 !:!!! !..! !|||:!! .!. :!!! ||||||.!!..!..! !! !| ValIleThrThrLeuGlnLeu---PheProIleLeuLeuAspIleValValProLeuA 457176 : GTTATTACCACGTTGCAACTC---TTTCCGATATTACTCGACATTGTGGTCCCATTGA : 457232 156 : snGluSerArgIleArgGluPheProAlaLeuIleGluCysPheIleAspHisGlnLy : 174 ||||||||||| ! !!|||!!. ! ! ! |||! !|||:!!||| :!!|| snGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLy 457233 : ACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAA : 457289 175 : sTyrPheTyrProIleLeuSerTyrMetPheLeuValIleValCysGlyGlnThrThr : 193 ||||.!.:!! !|||:!!:!!:!!!!:.!! ! !:!!:!! !!.! |||||| sTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThr 457290 : GTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACG : 457346 194 : MetIleAlaThrGluThrLeuTyrMetThrTyrThrGlnHisAlaCysGlyLeuPheG : 213 :!:! !|||!.!|||:!!||| !!!:||| !!..!! !|||!.!||||||||||||: LeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheL 457347 : TTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCA : 457406 214 : luIleAla{As} >>>> Target Intron 2 >>>> {n}CysArgIleGluGl : 221 !!:!!.!!{!.} 291 bp {.} !! ! !... ! ysLeuThr{Ar}++ -+{g}AsnLeuCysSerTy 457407 : AGCTTACT{AG}gt.........................tg{A}AATCTTTGTAGCTA : 457721 222 : nAlaLeuLeuIleThrValMetGlnAspThrAlaSerSerLeuGluLysGlnSerIle : 240 !||| ! !:!!:!! !!.! !|||:!!..!!.!|||! !!.. !.!! ! rArgLeuGluHisSerLeuAspHisValThrSerGlnLysLeuGlySerThrLysArg 457722 : TAGATTAGAACACTCTTTGGACCACGTTACCTCACAAAAATTGGGAAGTACCAAGAGA : 457778 241 : ValTrpGlnGlyIleIleGlyAlaValAsnMetHisArgArgAlaIleGluPheIle : 259 ..!!:: ! !!:!:|||! !|||||||||!!:||||||!:!||| !|||!!.:!! ThrTyrValArgLeuIleGluAlaValAsnIleHisArgLysAlaTyrGluLeuVal 457779 : ACGTACGTGAGGCTGATTGAAGCTGTTAACATACACAGAAAAGCTTACGAGTTGGTA : 457837 vulgar: CbirOr316 88 259 . KQ414815.1 456822 457837 + 176 M 39 117 S 0 1 5 0 2 I 0 210 3 0 2 S 1 2 M 14 42 G 1 0 M 72 216 S 0 2 5 0 2 I 0 287 3 0 2 S 1 1 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 456823 457837 176 + . gene_id 1 ; sequence CbirOr316 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 456823 456940 . + . KQ414815.1 exonerate:protein2genome:local exon 456823 456940 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 456941 456942 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 456941 457154 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457153 457154 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457155 457416 . + . KQ414815.1 exonerate:protein2genome:local exon 457155 457416 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local splice5 457417 457418 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 457417 457707 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 457706 457707 . + . intron_id 1 ; splice_site "TG" KQ414815.1 exonerate:protein2genome:local cds 457708 457837 . + . KQ414815.1 exonerate:protein2genome:local exon 457708 457837 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 456823 457837 176 + . alignment_id 1 ; Query CbirOr316 ; Align 456823 89 117 ; Align 457157 129 42 ; Align 457199 144 216 ; Align 457709 217 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr316 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 146 -> 226 Target range: 448091 -> 448331 147 : TyrLeuAspPheThrThrAlaAlaAsnGluSerArgIleArgGluPheProAlaLeuI : 166 :::||||||... ! ! !! !|||! !|||! ! !.!|||.!.||| !|||| PheLeuAspIleLeuMetProMetAsnValSerThrArgHisGluLeuProPheLeuI 448092 : tttctcgatattttaATGCCAATGAACGTATCTACACGGCACGAGCTACCCTTCCTAA : 448149 167 : leGluCysPheIleAspHisGlnLysTyrPheTyrProIleLeuSerTyrMetPheLe : 185 ||:!!|||||| !|||!!..!.|||!:!|||:!! !|||||| !!:!:!!.!!:! leGlnCysPheCysAspGlnAspLysPhePheHisTyrIleLeuValPheLeuIleVa 448150 : TTCAATGTTTCTGTGATCAAGATAAATTCTTCCACTATATATTAGTTTTCTTGATCGT : 448206 186 : uValIleValCysGlyGlnThrThrMetIleAlaThrGluThrLeuTyrMetThrTyr : 204 !:!!! !:!!! ||| !!:!..!:!::!!|||||| !||| !|||:!!! !!:! lLeuThrIleLeuGlyGlySerValValLeuAlaThrThrThrThrTyrLeuIlePhe 448207 : TCTCACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAACGACTTACTTGATATTC : 448263 205 : ThrGlnHisAlaCysGlyLeuPheGluIleAlaAsnCysArgIleGluGlnAlaLeuL : 224 !:!||||||..!||||||||||||:!!||||||...! ..!||| ! |||:!!. SerGlnHisCysCysGlyLeuPheLysIleAlaGly***GluIleMetThrAlaMetP 448264 : AGTCAACATTGTTGTGGATTGTTCAAAATTGCAGGGTAAGAAATTATGACTGCTATGt : 448323 225 : euIleThr : 226 .. ||| heAspThr 448324 : ttgataca : 448331 vulgar: CbirOr316 146 226 . KQ414815.1 448091 448331 + 164 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448092 448331 164 + . gene_id 2 ; sequence CbirOr316 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448092 448331 . + . KQ414815.1 exonerate:protein2genome:local exon 448092 448331 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448092 448331 164 + . alignment_id 2 ; Query CbirOr316 ; Align 448092 147 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr316 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 96 -> 214 Target range: 484779 -> 485926 97 : ArgSerAspTrpAsnGluLeuAsnThrMetGlnGluValGluIleIleLysLysTyrS : 116 |||||| !||||||||||||||||||!!: ! ! ! !||||||!:! !! ArgSerPheTrpAsnGluLeuAsnThrIleGlyThrArg***ArgIleLysArgSerP 484780 : AGGAGTTTTTGGAACGAATTGAACACGATTGGAACTCGTTGACGAATAAAGAGGAGCT : 484837 117 : erAlaPheGlyLysLeuIleThrValValAlaThrSerPheIleTyrLeuCysIle : 135 !!.!! !! ! !||| !!||| ! ! !! !! !|||:!!! ! ! heGlySerPheThrAsnIleProValSerArgGluPhe***ProTyrValSerHis++ 484838 : TCGGATCATTCACGAATATTCCAGTGTCACGAGAGTTCTAACCATATGTTTCTCATgt : 484894 136 : >>>> Target Intron 1 >>>> LeuCysValIleValGluGlnIleSerMetA : 145 793 bp ||| !|||:!::!! |||! !! | -+LeuLeuValLeuIleLeuGlyIlePheAsnA 484895 : .........................cgTTACTTGTGCTGATTCTTGGTATATTTAACA : 485717 146 : snLeuTyrLeuAspPheThrThrAlaAlaAsnGluSerArgIleArgGluPheProAl : 164 || ! !||||||.!! !! ! !! !||| ! !!!||| ||| !.!!||| snSerIleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIl 485718 : ACAGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTAT : 485774 165 : aLeuIleGluCysPheIleAspHisGlnLysTyrPheTyrProIleLeuSerTyrMet : 183 ! ! ||| !|||:!!|||!!.||||||||||||||||||||| !:!!:!!:!: eAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisVal 485775 : AAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTT : 485831 184 : PheLeuValIleValCysGlyGlnThrThrMetIleAlaThrGluThrLeuTyrMetT : 203 !!||| !!:!!:!! !||| !! !..!:!::!!::!|||||| ||| |||. ValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetA 485832 : GTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatgg : 485891 204 : hrTyrThrGlnHisAlaCysGlyLeuPheGluIle : 214 !! ! !||||||.!!|||||||||!:! !||| laIleIleGlnHisThrCysGlyLeuTyrThrIle 485892 : CGATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr316 96 214 . KQ414815.1 484779 485926 + 161 M 38 114 5 0 2 I 0 789 3 0 2 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 484780 485926 161 + . gene_id 3 ; sequence CbirOr316 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 484780 484893 . + . KQ414815.1 exonerate:protein2genome:local exon 484780 484893 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 484894 484895 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 484894 485686 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 485685 485686 . + . intron_id 0 ; splice_site "CG" KQ414815.1 exonerate:protein2genome:local cds 485687 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485687 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 484780 485926 161 + . alignment_id 3 ; Query CbirOr316 ; Align 484780 97 114 ; Align 485687 135 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr316 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 312 -> 381 Target range: 454025 -> 454445 313 : TyrPhePhePheValAsnTyrLeuGlyGlnLysValIleAspHisSerGlyAsnIleP : 332 ||| ! !!...!!..!:!!!!||||||!:!:!!||||||||||||..!|||:!!| TyrGlyValLeuThrThrPhePheGlyGlnArgIleIleAspHisSerSerAsnValP 454026 : TACGGAGTATTAACAACATTTTTTGGACAAAGAATAATTGACCATAGTTCGAACGTTT : 454083 333 : heHisLys{Th} >>>> Target Intron 1 >>>> {r}TyrAsnAlaGlnTr : 340 ||:!! ! {.!} 213 bp {!}! !|||:!!!!.|| heTyrAsp{Al}++ ++{a}CysAsnSerHisTr 454084 : TCTATGAT{GC}gt.........................ag{A}TGCAATTCACACTG : 454320 341 : pTyrValAlaProValLysValGlnLysLeuLeuTrpLeuValMetGlnArgSerLeu : 359 ||||! !!.!|||:!! ! !.!!:!||||||! ! |||:!!:!!|||||||||:!! pTyrAspValProLeuAspAlaArgLysLeuTyrLeuLeuIleLeuGlnArgSerMet 454321 : GTACGATGTTCCTCTTGATGCTCGAAAGTTGTACCTACTCATTCTGCAACGAAGTATG : 454377 360 : ArgHisCysThrAsnValValGlyGlyLeuPheValProSerLeuGluGlyPheAlaS : 379 !:! !! !:!! ! !:!!..!! !|||!:!||| !!||||||:!!|||.!.::!: LysSerSerSerPheSerIleSerAspLeuTyrValSerSerLeuGlnGlyLeuSerA 454378 : AAAAGCTCCTCGTTCTCCATATCCGATTTATACGTTTCGTCGTTACAGGGACTAAGCG : 454437 380 : erIleThr : 381 !!:!!||| laValThr 454438 : CGGTAACA : 454445 vulgar: CbirOr316 312 381 . KQ414815.1 454025 454445 + 129 M 22 66 S 0 2 5 0 2 I 0 209 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 454026 454445 129 + . gene_id 4 ; sequence CbirOr316 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 454026 454093 . + . KQ414815.1 exonerate:protein2genome:local exon 454026 454093 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 454094 454095 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 454094 454306 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 454305 454306 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 454307 454445 . + . KQ414815.1 exonerate:protein2genome:local exon 454307 454445 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 454026 454445 129 + . alignment_id 4 ; Query CbirOr316 ; Align 454026 313 66 ; Align 454308 336 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr316 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 335 -> 394 Target range: 449611 -> 449891 336 : TyrAsnAlaGlnTrpTyrValAlaProValLysValGlnLysLeuLeuTrpLeuValM : 355 ||| !!.!!:!!||||||! !||||||||| |||||||||:!!! !! !!!!:!!| TyrTyrThrLysTrpTyrGluAlaProValPheValGlnLysMetTyrLeuPheLeuM 449612 : TACTACACAAAATGGTACGAAGCTCCAGTGTTCGTGCAAAAGATGTACTTGTTCTTGA : 449669 356 : etGlnArgSerLeuArgHisCysThrAsnValValGlyGlyLeuPheValProSerLe : 374 ||! !|||!!! !!:! !! ..!!!.:!!||| !|||!!!!:!..!||||||:! etLeuArgThrThrLysAsp---ValLysIleValLeuGlyPheTyrThrProSerIl 449670 : TGCTAAGAACCACAAAAGAC---GTAAAGATAGTTCTTGGTTTCTATACCCCATCGAT : 449723 375 : uGluGlyPheAlaSer >>>> Target Intron 1 >>>> IleThrGlyAlaS : 384 !|||||||||:!!||| 106 bp :!!! !..! !! eGluGlyPheSerSer++ ++LeuMetAsnIleT 449724 : AGAGGGTTTCTCCTCGgt.........................agCTTATGAATATAA : 449859 385 : erIleSerTyrPheMetValIleTyrSerVal : 394 !!.!!|||||||||||||||:!!||||||||| hrPheSerTyrPheMetValLeuTyrSerVal 449860 : CGTTCAGTTATTTCATGGTTCTCTATTCTGTT : 449891 vulgar: CbirOr316 335 394 . KQ414815.1 449611 449891 + 117 M 26 78 G 1 0 M 17 51 5 0 2 I 0 102 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 449612 449891 117 + . gene_id 5 ; sequence CbirOr316 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 449612 449740 . + . KQ414815.1 exonerate:protein2genome:local exon 449612 449740 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local splice5 449741 449742 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 449741 449846 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 449845 449846 . + . intron_id 0 ; splice_site "aG" KQ414815.1 exonerate:protein2genome:local cds 449847 449891 . + . KQ414815.1 exonerate:protein2genome:local exon 449847 449891 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 449612 449891 117 + . alignment_id 5 ; Query CbirOr316 ; Align 449612 336 78 ; Align 449690 363 51 ; Align 449847 380 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr316 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 265 -> 336 Target range: 468353 -> 468768 266 : PheThrPheAlaTyrPheLeuValLeuProLeuGlyValLeuSerLeuSerValAsnL : 285 ||| :::...|||...!!! !||| !||| !|||! !|||:!:|||:::|||| PheLysTyrCysTyrMetPheSerLeuLeuLeuPheValProSerValSerIleAsnL 468354 : tttaaatattgttacatGTTTTCGTTGTTACTGTTCGTTCCTTCTGTtagtattaatt : 468411 286 : euTyrArgLeu{A} >>>> Target Intron 1 >>>> {la}ArgLeuLeuPr : 293 ||||| :::{ } 202 bp { !} !:!!||| ! euTyrCysVal{L}++ +-{ys}SerMetLeuTh 468412 : tatactgtgta{a}gt.........................ac{AG}TCAATGCTAAC : 468637 294 : oIleLysGluTyrGluGluAlaAsnValSerPhePheLeuValPheGlyHisLeuTrp : 312 !!!: ! !!:!:!|||!!: ! ! !!:!.!.||||||:!!.!.|||!!.||| ! rMetAspAspPheGluAspLeuCysArgAsnIlePheLeuLeuMetGlyGlnLeuGly 468638 : AATGGACGACTTCGAAGATTTATGTCGTAACATATTCCTACTAATGGGACAGCTTGGT : 468694 313 : TyrPhePhePheValAsnTyrLeuGlyGlnLysValIleAspHisSerGlyAsnIleP : 332 |||...|||...:::||||||:::|||||| ! :!!:!!:!!|||!:!..!.!.:!!| TyrLeuPheIleIleAsnTyrMetGlyGlnAspLeuValAsnHisAsnAsnGluValP 468695 : tacttatttataattaattacatgGGACAGGATCTAGTCAATCACAATAACGAGGTTT : 468754 333 : heHisLysThrTyr : 336 ||!!.! !.!!||| heGlnThrAlaTyr 468755 : TCCAAACAGCGTAT : 468768 vulgar: CbirOr316 265 336 . KQ414815.1 468353 468768 + 110 M 23 69 S 0 1 5 0 2 I 0 198 3 0 2 S 1 2 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 468354 468768 110 + . gene_id 6 ; sequence CbirOr316 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 468354 468423 . + . KQ414815.1 exonerate:protein2genome:local exon 468354 468423 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 468424 468425 . + . intron_id 1 ; splice_site "gt" KQ414815.1 exonerate:protein2genome:local intron 468424 468625 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 468624 468625 . + . intron_id 0 ; splice_site "AC" KQ414815.1 exonerate:protein2genome:local cds 468626 468768 . + . KQ414815.1 exonerate:protein2genome:local exon 468626 468768 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 468354 468768 110 + . alignment_id 6 ; Query CbirOr316 ; Align 468354 266 69 ; Align 468628 290 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr316 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 329 -> 380 Target range: 472686 -> 472839 330 : AsnIlePheHisLysThrTyrAsnAlaGlnTrpTyrValAlaProValLysValGlnL : 349 ...|||.!! ! ! !||||||:!!:!!|||||| !:!!|||:!! !:!!|||| GlyIleLeuSerLeuArgTyrAsnSerGluTrpTyrCysSerProLeuProIleGlnL 472687 : GGAATCCTTTCTCTCAGGTATAATTCTGAATGGTATTGCTCGCCGTTGCCAATACAAA : 472744 350 : ysLeuLeuTrpLeuValMetGlnArgSerLeuArgHisCysThrAsnValValGlyGl : 368 |||||||| !!!:!!|||||| !!!!!:!!!.! ::: || ysLeuLeuHisPheIleMetGlnGlyArgIleAsnLeuAsnIlePhePheMetTyrGl 472745 : AATTGCTACATTTTATCATGCAGGGAAGGATAAATctgaacatattttttatgtacGG : 472801 369 : yLeuPheValProSerLeuGluGlyPheAlaSerIle : 380 | !||||||||||||:!!|||||||||!.!:!!:!! yThrPheValProSerMetGluGlyPheGlyAlaVal 472802 : TACATTCGTACCTTCGATGGAAGGTTTTGGCGCGGTA : 472839 vulgar: CbirOr316 329 380 . KQ414815.1 472686 472839 + 108 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 472687 472839 108 + . gene_id 7 ; sequence CbirOr316 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 472687 472839 . + . KQ414815.1 exonerate:protein2genome:local exon 472687 472839 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 472687 472839 108 + . alignment_id 7 ; Query CbirOr316 ; Align 472687 330 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr316 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 0 -> 49 Target range: 484183 -> 484330 1 : MetThrSerAlaAlaAsnSerTyrTyrArgIleAsnArgIleLeuLeuGluCysValG : 20 ||| !! !|||!.!!:!..!|||||||||.!!|||||||||||||||..! :!!| MetAspPheAlaGlySerGlnTyrTyrArgPheAsnArgIleLeuLeuSerThrIleG 484184 : ATGGACTTCGCGGGCAGTCAGTATTATAGATTCAACCGAATACTTCTCTCGACAATTG : 484241 21 : lyLeuTrpProTyrGlnAsnSerAsnTyrArgArgAlaIleMetAlaIleValSerVa : 39 |||||! ||||||.!.:::!!!!!.|||! !!:! ! ! .!!.!!:!!! !:! lyLeuSerProTyrAsnSerThrLysTyrThrLysPheTrpAsnThrPheIleIleLe 484242 : GTCTTTCACCATACAATTCGACGAAGTACACGAAATTCTGGAACACTTTCATCATTTT : 484298 40 : lLeuLeuValSerGlyValValLeuGlnLeu : 49 !:!!||| !!||||||:!! !!:!!|||:!! uValLeuPheSerGlyIlePheValGlnVal 484299 : AGTCTTATTCTCCGGTATCTTTGTTCAGGTA : 484330 vulgar: CbirOr316 0 49 . KQ414815.1 484183 484330 + 100 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 484184 484330 100 + . gene_id 8 ; sequence CbirOr316 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 484184 484330 . + . KQ414815.1 exonerate:protein2genome:local exon 484184 484330 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 484184 484330 100 + . alignment_id 8 ; Query CbirOr316 ; Align 484184 1 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr334 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 125 -> 213 Target range: 481971 -> 482235 126 : LeuThrMetIleSerIleValGlyThrPheLeuIleAlaIleThrGlnValTrpSerA : 145 :::||| !:!!! ! ! !..!..!!!.:!!:!: !:!: !!!.:!!! !||| IleThrAlaLeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerP 481972 : attacagcGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTT : 482029 146 : spValLeuAsnValIleLeuGlnIleAsnValSerArgSerHisAsnValProIleIl : 164 !||||||:!!||||||:!!! :!!|||! !!!!|||!!!|||.!. !!|||:!! heValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSe 482030 : TCGTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATC : 482086 165 : eThrGluTyrPheIleSerGlnGluLysTyrTyrTyrLeuIleMetLeuHisGlnThr : 183 !! !||||||||||||..!|||:!!||||||! !!!!|||! !!!!|||||| ! rMetGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrp 482087 : AATGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGG : 482143 184 : ThrAlaValTyrIleGlyValPheThrThrValAlaIleGlyThrMetLeuIleAlaP : 203 !:!! !! !:!!! !!.! ! !! !|||!.!|||! !|||:!!:!!:!! !! PheSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetT 482144 : TTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGT : 482203 204 : heTyrHisAsnIleCysGlyValPheArgIle : 213 :: !.!.:!! !....!!:!!|||! !:!! rpLeuGluHisAlaAlaSerLeuPheThrLeu 482204 : GGCTTGAACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: CbirOr334 125 213 . KQ414815.1 481971 482235 + 120 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481972 482235 120 + . gene_id 1 ; sequence CbirOr334 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481972 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481972 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481972 482235 120 + . alignment_id 1 ; Query CbirOr334 ; Align 481972 126 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr334 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 332 -> 390 Target range: 476709 -> 476958 333 : TyrAsnSerGlnTrpTyrIleAlaProLeuArgValGlnGlyLeuIleLeuPheLeuL : 352 |||||||||:!!||||||! !||||||||| :::||| |||:::......:::: TyrAsnSerGluTrpTyrThrAlaProLeuSerIleGlnLysLeuLeuPheLeuIleI 476710 : TACAACTCTGAATGGTACACAGCGCCGTTATCcattcaaaaattattatttcttataa : 476767 353 : euGluArgGlySerThrGluPheLysLeuAsnValGlyGlyLeuTyrAsnAlaSerLe : 371 :! !||| !!!!! ! ! !! ! !!!.!.!! ! !:!!|||!.!||||||:! leLeuArgThrThrLysProProIleSerLysAlaValPheValTyrThrAlaSerMe 476768 : tATTACGAACAACGAAACCACCCATTTCGAAGGCAGTGTTCGTATATACTGCATCGAT : 476824 372 : uGluGlyPheAla >>>> Target Intron 1 >>>> MetLeuValLysAlaS : 381 !|||.!!|||.!! 78 bp |||||||||:!!| tGluSerPheThr++ ++---LeuValLysSerS 476825 : GGAAAGTTTCACGgt.........................ag---CTGGTAAAATCAT : 476929 382 : erValSerTyrPheThrValIleTyrSer : 390 ||||||||||||||! !|||||||||||| erValSerTyrPheMetValIleTyrSer 476930 : CAGTGTCTTATTTCATGGTGATATACTCT : 476958 vulgar: CbirOr334 332 390 . KQ414815.1 476709 476958 + 101 M 43 129 5 0 2 I 0 74 3 0 2 G 1 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 476710 476958 101 + . gene_id 2 ; sequence CbirOr334 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 476710 476838 . + . KQ414815.1 exonerate:protein2genome:local exon 476710 476838 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 476839 476840 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 476839 476916 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 476915 476916 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 476917 476958 . + . KQ414815.1 exonerate:protein2genome:local exon 476917 476958 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 476710 476958 101 + . alignment_id 2 ; Query CbirOr334 ; Align 476710 333 129 ; Align 476917 377 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr314 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 222 Query range: 88 -> 213 Target range: 456822 -> 457411 89 : IleArgLysLeuIleGluValIleLysHisAspLeuAsnThrIleLysArgLysGluG : 108 ||||||:!!:!! !!!: !||| !!|||! !!!.:!!:!:|||!.!! !|||| IleArgGluIleTyrAspAsnIleAlaAspAspTrpLysSerLeuLysAsnMetGluG 456823 : ATACGGGAGATTTACGACAATATCGCTGACGATTGGAAATCATTGAAGAACATGGAAG : 456880 109 : luIleGluIleLeuLysGluTyrAlaAsnIleGlyTyrIleLeuThrMetSerIleLe : 127 |||||||||||:::::::::||||||||| !||| ! !!!!|||:!::!!||| luIleGluIleIleArgLysTyrAlaAsnGlyGlyArgArgPheThrLeuAlaIleAl 456881 : AAATCGagattattcgaaaatatgcGAACGGTGGCAGGAGATTTACACTTGCAATAGC : 456937 128 : u{I} >>>> Target Intron 1 >>>> {le}LeuPheTyrIleAlaIlePhe : 135 !{|} 214 bp {||}! ! !||| !!.! !.!. a{I}++ ++{le}SerThrTyrCysGlyAlaLeu 456938 : A{A}gt.........................ag{TT}TCTACTTATTGTGGCGCACTG : 457175 136 : GlyPheIleMetMetGluValLeuProLysIleLeuAspIleValValProLeuAsnG : 155 ! !.!!! !! !:!!:!!:!!!!!|||! !:!!||||||||||||||||||||||||| ValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnG 457176 : GTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACG : 457235 156 : luSerArgProValHisLeuLeuGlyValAlaThrLeuPhePheAspGluGluLysTy : 174 ||||||||||| !.!.|||! ! !..!||| !! !||| !!||| !:!!||||| luSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTy 457236 : AATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTA : 457292 175 : rPhePheProIleLeuGlyHisMetThrValAlaLeuLeuSerGluThrThrThrIle : 193 |.!. ! !|||:!!!.!|||!!:! !..!..!||||||! !! !.!!||||||:!! rMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeu 457293 : TATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTA : 457349 194 : IleAlaThrGluThrValGlyLeuIleLeuIleGlnHisLeuCysGlyLeuPheLysI : 213 ! !|||!.!|||:!!:!! !:!!! !:!!! !|||:!!|||||||||||||||: ThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysL 457350 : ACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGC : 457409 214 : le : 213 !! eu 457410 : TT : 457411 vulgar: CbirOr314 88 213 . KQ414815.1 456822 457411 + 222 M 39 117 S 0 1 5 0 2 I 0 210 3 0 2 S 1 2 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 456823 457411 222 + . gene_id 1 ; sequence CbirOr314 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 456823 456940 . + . KQ414815.1 exonerate:protein2genome:local exon 456823 456940 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 456941 456942 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 456941 457154 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457153 457154 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457155 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457155 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 456823 457411 222 + . alignment_id 1 ; Query CbirOr314 ; Align 456823 89 117 ; Align 457157 129 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr314 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 163 Query range: 57 -> 214 Target range: 447605 -> 448298 58 : AspLeuAspSerLeuPheGlyIleLeuTrpPheAlaValProCysLeuValPheSerL : 77 |||:!!|||!!!:!!!!..!! ! ! ! ! !:!! !! |||:!!!:!! !: AspValAspThrIleLeuSerAspGlyAlaCysIleIleMetLeuLeuIleTyrIleV 447606 : GACGTTGATACGATTTTAAGTGATGGTGCCTGTATAATCATGTTGCTCATCTACATAG : 447663 78 : euLysTyrAlaThrPheCysIleGlnSerLysGluIleArgLysLeuIleGluValIl : 96 !!||||||..!|||||||||! |||:!!|||.!.:!:!!! :!!! !|||:!! alLysTyrCysThrPheCysLysGlnAlaLysAsnValSerCysValAsnGluIleAl 447664 : TGAAATACTGCACGTTCTGCAAGCAGGCCAAAAACGTGAGTTGTGTGAACGAAATTGC : 447720 97 : eLysHisAspLeuAsnThrIleLysArgLysGluGluIleGluIleLeuLysGluTyr : 115 ! ! :!! ! !||| ! ! ! !:!! !...:!! |||||||||.!. ! aHisTyrTrp***Asn***GlyTyrAspGluLeuSerValIleIleLeuLysHisSer 447721 : ACATTATTGGTGAAATTAGGGATACGATGAATTAAGCGTTATCATTTTAAAGCACAGC : 447777 116 : AlaAsnIleGlyTyr{I} >>>> Target Intron 1 >>>> {le}LeuThrM : 124 :!!!.. ! !!! {|} 222 bp {||}||| . SerArgCysCysSer{I}++ --{le}LeuIleP 447778 : TCAAGATGTTGTTCG{A}gt.........................ct{tt}ctcattt : 448026 125 : etSerIleLeuIleLeuPheTyrIleAlaIlePheGlyPheIleMetMetGluValLe : 143 ..:::||| ::::!!||| !:!::!!:!!.!!.!!|||! !:!!:!:||| !!:! heThrIleSerValValPheAlaLeuSerLeuIleSerPheThrLeuValGluPheVa 448027 : tcacaatttcagtGGTGTTTGCCTTGTCTTTAATTAGCTTTACCTTGGTTGAGTTCGT : 448083 144 : uProLysIleLeuAspIleValValProLeuAsnGluSerArgProValHisLeuLeu : 162 ! ! ...|||||||||::::!!|||:!!|||! !|||! !! ! !.!.|||! ! lValHisPheLeuAspIleLeuMetProMetAsnValSerThrArgHisGluLeuPro 448084 : GGTAcattttctcgatattttaATGCCAATGAACGTATCTACACGGCACGAGCTACCC : 448140 163 : GlyValAlaThrLeuPhePheAspGluGluLysTyrPhePheProIleLeuGlyHisM : 182 !:!! ! !! !|||! !|||:!!!!:|||!:!||| ! !||||||! ! !: PheLeuIleGlnCysPheCysAspGlnAspLysPhePheHisTyrIleLeuValPheL 448141 : TTCCTAATTCAATGTTTCTGTGATCAAGATAAATTCTTCCACTATATATTAGTTTTCT : 448200 183 : etThrValAlaLeuLeuSerGluThrThrThrIleIleAlaThrGluThrValGlyLe : 201 !!! !||| ! !:!!! !! !!:!..!:!!:!!|||||| !|||..! !|| euIleValLeuThrIleLeuGlyGlySerValValLeuAlaThrThrThrThrTyrLe 448201 : TGATCGTTCTCACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAACGACTTACTT : 448257 202 : uIleLeuIleGlnHisLeuCysGlyLeuPheLysIleAla : 214 ||||!!!! !||||||! !||||||||||||||||||||| uIlePheSerGlnHisCysCysGlyLeuPheLysIleAla 448258 : GATATTCAGTCAACATTGTTGTGGATTGTTCAAAATTGCA : 448298 vulgar: CbirOr314 57 214 . KQ414815.1 447605 448298 + 163 M 63 189 S 0 1 5 0 2 I 0 218 3 0 2 S 1 2 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 447606 448298 163 + . gene_id 2 ; sequence CbirOr314 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 447606 447795 . + . KQ414815.1 exonerate:protein2genome:local exon 447606 447795 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 447796 447797 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 447796 448017 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 448016 448017 . + . intron_id 0 ; splice_site "ct" KQ414815.1 exonerate:protein2genome:local cds 448018 448298 . + . KQ414815.1 exonerate:protein2genome:local exon 448018 448298 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 447606 448298 163 + . alignment_id 2 ; Query CbirOr314 ; Align 447606 58 189 ; Align 448020 122 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr314 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 125 -> 213 Target range: 475506 -> 475770 126 : IleLeuIleLeuPheTyrIleAlaIlePheGlyPheIleMetMetGluValLeuProL : 145 ::! !:!!||| ! ||| !.!!|||||| !.!.|||:!!:!: !!! ! !!| ValThrValLeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerSerL 475507 : gtTACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGTCTA : 475564 146 : ysIleLeuAspIleValValProLeuAsnGluSerArgProValHisLeuLeuGlyVa : 164 ||||||||||| !:!!:!!||||||||||||||||||||| ! ! !||| ysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleAr 475565 : AGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacg : 475621 165 : lAlaThrLeuPhePheAspGluGluLysTyrPhePheProIleLeuGlyHisMetThr : 183 |||...:::|||:!!|||||||||!:!! !! !:!! !:!!..!||| gIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThr 475622 : aatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACT : 475678 184 : ValAlaLeuLeuSerGluThrThrThrIleIleAlaThrGluThrValGlyLeuIleL : 203 |||.!!:!!||| ! !|||||| !:!!|||||||||.!!:!! ! !!!:! ValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetT 475679 : GTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGT : 475738 204 : euIleGlnHisLeuCysGlyLeuPheLysIle : 213 !:!:||||||! ! ...||||||:::||| rpLeuGlnHisCysIleSerLeuPheGluIle 475739 : GGTTGCAACATTGCATaagtttatttgaaatt : 475770 vulgar: CbirOr314 125 213 . KQ414815.1 475506 475770 + 155 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475507 475770 155 + . gene_id 3 ; sequence CbirOr314 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475507 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475507 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475507 475770 155 + . alignment_id 3 ; Query CbirOr314 ; Align 475507 126 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr314 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 123 -> 213 Target range: 464567 -> 464840 124 : MetSerIleLeuIleLeuPheTyrIleAlaIlePheGlyPheIleMetMetGluValL : 143 :!!!:!|||! !:!:! !||| ! !!.!|||.!. !.!! !:!::!:||||||| LeuAsnIleProValCysPheIleProValIleLeuPheIleCysLeuLeuGluValL 464568 : CTGAATATTCCAGTGTGCTTCATTCCCGTTATACTGTTCATCTGTTTACTCGAAGTAT : 464625 144 : euProLysIleLeuAspIleValValProLeuAsnGluSerArgProValHisLeuLe : 162 ||||| ! |||||||||:!:|||!.!|||||||||||||||||| !! !!!.! !|| euProAspIleLeuAspValValAlaProLeuAsnGluSerArgSerHisGlnTyrLe 464626 : TGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATGAATCTCGTTCTCATCAATACTT : 464682 163 : uGlyValAlaThrLeuPhePhe<->AspGluGluLysTyrPhePheProIleLeuGly : 180 | !..!||| !!!!|||.!! |||.....! ! !!!:!.!! !! !! !! ! uIleThrAlaGluPhePheIleThrAspSerSerProAsnTyrIleValThrCysVal 464683 : AATTACCGCGGAATTTTTCATCACTGATAGTTCGCCGAATTATATCGTAACTTGTGTT : 464739 181 : HisMetThrValAlaLeuLeuSerGluThrThrThrIleIleAlaThrGluThrValG : 200 !! ! !:!!.!!|||:!!! !! !..!|||||||||||||||:!!|||||| !! GlyThrAspIleThrLeuIleMetGlyValThrThrIleIleAlaSerGluThrPheT 464740 : GGTACGGATATTACTCTTATCATGGGAGTCACGACAATAATTGCCTCCGAAACGTTCA : 464799 201 : lyLeuIleLeuIleGlnHisLeuCysGlyLeuPheLysIle : 213 !!!!:!:|||:!:||||||:!!|||!.!:!!||||||||| hrPheLeuLeuLeuGlnHisIleCysAlaMetPheLysIle 464800 : CTTTTTTGTTGCTGCAACATATCTGCGCAATGTTCAAAATC : 464840 vulgar: CbirOr314 123 213 . KQ414815.1 464567 464840 + 149 M 46 138 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464568 464840 149 + . gene_id 4 ; sequence CbirOr314 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464568 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464568 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464568 464840 149 + . alignment_id 4 ; Query CbirOr314 ; Align 464568 124 138 ; Align 464709 170 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr314 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 116 -> 213 Target range: 485632 -> 485926 117 : AsnIleGlyTyrIleLeuThrMetSerIleLeu<->IleLeuPheTyrIleAlaIleP : 135 |||||| ! !|||||||||! ||||||:!! :!!:!!.!! ! !:!!:!!. AsnIleThrSerIleLeuThrAsnSerIleIleAlaValIleIleGlyProSerLeuL 485633 : AACATAACAAGTATTTTAACGAACAGTATTATTGCAGTAATTATCGGTCCATCGTTAC : 485690 136 : heGlyPheIleMetMetGluValLeuProLysIleLeuAspIleValValProLeuAs : 154 !!! !.!.|||:!: ! !! ! !!..||||||||||||:!!:!!|||||||| euValLeuIleLeuGlyIlePheAsnAsnSerIleLeuAspIleLeuIleProLeuAs 485691 : TTGTGCTGATTCTTGGTATATTTAACAACAGTATTCTGGACATTTTGATTCCTTTGAA : 485747 155 : nGluSerArgProValHisLeuLeuGlyValAlaThrLeuPhePheAspGluGluLys : 173 | ! !!!|||||| ! :!!! ! ! !:!! !! !||| !!|||:!!:!!||| nTyrThrArgProArgThrIleProIleAsnSerGluHisPheValAspGlnGlnLys 485748 : TTACACTCGTCCGCGGACGATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAG : 485804 174 : TyrPhePheProIleLeuGlyHisMetThrValAlaLeuLeuSerGluThrThrThrI : 193 ||||||!:!|||||| !!.!|||:!:..!:!! !:!!:!!! !! .!!! !..!: TyrPheTyrProIleAlaAlaHisValValLeuPheValIleIleGlyAlaIleValL 485805 : TATTTCTACCCTATTGCAGCACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTAT : 485864 194 : leIleAlaThrGluThrValGlyLeuIleLeuIleGlnHisLeuCysGlyLeuPheLy : 212 !!:!!::!|||||| ::: ::: :!!||||||||| !|||||||||!:!! euLeuSerThrGluIleLeuIleMetAlaIleIleGlnHisThrCysGlyLeuTyrTh 485865 : TACTCAGCaccgaaatattaattatggCGATAATACAGCACACCTGTGGTTTGTATAC : 485921 213 : sIle : 213 !||| rIle 485922 : AATC : 485926 vulgar: CbirOr314 116 213 . KQ414815.1 485632 485926 + 143 M 11 33 G 0 3 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485633 485926 143 + . gene_id 5 ; sequence CbirOr314 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485633 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485633 485926 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485633 485926 143 + . alignment_id 5 ; Query CbirOr314 ; Align 485633 117 33 ; Align 485669 128 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr314 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 87 -> 220 Target range: 471356 -> 471831 88 : GluIleArgLysLeuIleGluValIleLysHisAspLeuAsnThrIleLysArgLysG : 107 :!!:!!|||:!!! !:!!!!:! !!!:! !!.!:!!! !||| !! ::!!.!! !! GlnLeuArgGluTyrLeuAspGluMetThrArgAsnTrpAsnGluThrArgAsnIleV 471357 : CAGCTAAGGGAATATCTAGACGAGATGACGCGTAATTGGAACGAAACGCGAAACATAG : 471414 108 : luGluIleGluIleLeuLysGluTyrAlaAsnIleGlyTyrIleLeuThrMetSerIl : 126 |||:!:|||||||||||||||:!!|||::!!!:||| ! !!!!:!!!!:! ! alGluLeuGluIleLeuLysGluHisAlaSerMetGlyLysArgPheSerIleIleCy 471415 : TCGAGCTGGAAATATTGAAGGAACACGCGTCTATGGGGAAACGTTTCTCGATTATTTG : 471471 127 : eLeu{I} >>>> Target Intron 1 >>>> {le}LeuPheTyrIle<->Ala : 133 !:!!{ } 73 bp { !}!!!!:!|||! ! sIle{G}++ ++{ly}PheTyrTyrThrAsnLeu 471472 : CATC{G}gt.........................ag{GT}TTCTATTACACGAATCTA : 471568 134 : IlePheGlyPheIleMetMetGluValLeuProLysIleLeuAspIleValValProL : 153 :!!.!! ! !:!!!!::!!...:!!! !||| ||||||||||||:!!:!!|||| LeuIleThrSerValIleLeuSerMetSerProLeuIleLeuAspIleIleIleProL 471569 : CTCATTACTAGTGTAATACTGTCCATGTCGCCTCTTATTCTCGATATTATAATACCTC : 471628 154 : euAsnGluSerArgProValHisLeuLeuGlyValAlaThrLeuPhePheAspGluGl : 172 ||||| !||||||||| !:!!!!!! ! !..! ! !!!!.!! !:!!:!!|| euAsnThrSerArgProArgTyrPheProPheThrPheAspPheIleProAsnGlnGl 471629 : TGAACACGTCACGTCCACGTTACTTTCCATTTACGTTCGATTTCATTCCCAATCAAGA : 471685 173 : uLysTyrPhePheProIleLeuGlyHisMetThrValAlaLeuLeuSerGluThrThr : 191 |:!!||||||! |||||| ! ! ! !:!! !! !:!!!!!! ! !.!! uGluTyrPhe***ProIleThrIlePheSerGlyIleLeuCysIleCysGlyLeuAla 471686 : GGAATACTTCTAACCGATTACTATCTTTTCTGGCATATTGTGCATTTGTGGATTAGCA : 471742 192 : ThrIleIleAlaThrGluThrValGlyLeuIleLeuIleGlnHisLeuCysGlyLeuP : 211 .!!!!:|||::!!:!||| !:!! !:!!!!: !:!! !|||:!! !!||||||! AlaMetIleSerSerGluGlyLeuLeuMetMetAsnValLeuHisValArgGlyLeuT 471743 : GCAATGATAAGTAGCGAGGGTCTGCTTATGATGAATGTTTTACACGTACGTGGATTGT : 471802 212 : heLysIleAlaSerPheArgIleGlnHis : 220 :!!!.||||||!!!! !:!! !||| yrAsnIleAlaThr***ValLeuLeuHis 471803 : ATAACATCGCTACGTGAGTACTATTACAT : 471831 vulgar: CbirOr314 87 220 . KQ414815.1 471356 471831 + 121 M 40 120 S 0 1 5 0 2 I 0 69 3 0 2 S 1 2 M 4 12 G 0 3 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471357 471831 121 + . gene_id 6 ; sequence CbirOr314 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 471357 471477 . + . KQ414815.1 exonerate:protein2genome:local exon 471357 471477 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 471478 471479 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 471478 471550 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 471549 471550 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 471551 471831 . + . KQ414815.1 exonerate:protein2genome:local exon 471551 471831 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471357 471831 121 + . alignment_id 6 ; Query CbirOr314 ; Align 471357 88 120 ; Align 471553 129 12 ; Align 471568 133 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr314 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 124 -> 213 Target range: 481968 -> 482235 125 : SerIleLeuIleLeuPheTyrIleAlaIlePheGlyPheIleMetMetGluValLeuP : 144 :::||| |||.!!||| !:!!:!:!!. !.!.|||:!! .!.:!!! ! AsnIleThrAlaLeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerS 481969 : aatattacagcGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGA : 482026 145 : roLysIleLeuAspIleValValProLeuAsnGluSerArgProValHisLeuLeuGl : 163 ! :!!||||||:!!:!!|||||||||||||||!!!||| !! !!!.!!!! !! erPheValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProVa 482027 : GTTTCGTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGT : 482083 164 : yValAlaThrLeuPhePheAspGluGluLysTyrPhePheProIleLeuGlyHisMet : 182 ! ! ! !! !|||.!!|||:!!:!!||||||! .!! !||| ! !|||..! lSerMetGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGln 482084 : ATCAATGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAG : 482140 183 : ThrValAlaLeuLeuSerGluThrThrThrIleIleAlaThrGluThrValGlyLeuI : 202 ! !!:!!!!!||| !! .!!|||! !|||:!!!.!! !||||||:!! !:!!! TrpPheSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValM 482141 : TGGTTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTA : 482200 203 : leLeuIleGlnHisLeuCysGlyLeuPheLysIle : 213 !:! !:!!:!!||| !....!!||||||! :!! etTrpLeuGluHisAlaAlaSerLeuPheThrLeu 482201 : TGTGGCTTGAACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: CbirOr314 124 213 . KQ414815.1 481968 482235 + 114 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481969 482235 114 + . gene_id 7 ; sequence CbirOr314 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481969 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481969 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481969 482235 114 + . alignment_id 7 ; Query CbirOr314 ; Align 481969 125 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr314 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 161 -> 223 Target range: 478629 -> 478815 162 : LeuGlyValAlaThrLeuPhePheAspGluGluLysTyrPhePheProIleLeuGlyH : 181 :!!|||..!.!! !! !|||.!!||||||:::|||||||||... |||:::...| MetGlyThrThrGluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerH 478630 : ATGGGCACCACGGAATACTTCATTGacgagaagaaatatttcatatttattatttctc : 478687 182 : isMetThrValAlaLeuLeuSerGluThrThrThrIleIleAlaThrGluThrValGl : 200 ||:!! !:!!:!!|||:!!! !.!..!!|||..! !:!!|||||||||:!! !! isValTyrLeuSerLeuIleMetHisAlaThrValTyrValAlaThrGluSer***Va 478688 : acGTGTACCTGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGT : 478744 201 : yLeuIleLeuIleGlnHisLeuCysGlyLeuPheLysIleAlaSerPheArgIleGln : 219 !:!!!!:! !!!: !||| ! !||||||!:!!!.||| !!!!!:!!.! ||| lIleMetTrpMetValHisThrIleGlyLeuTyrAsnIleIleArgTyrAsnGlnGln 478745 : GATTATGTGGATGGTGCATACTATCGGCTTGTATAATATCATAAGGTATAATCAGCAA : 478801 220 : HisIlePheAsp : 223 ...:!:.!!||| ArgLeuIleAsp 478802 : AGATTGATCGAT : 478815 vulgar: CbirOr314 161 223 . KQ414815.1 478629 478815 + 107 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478630 478815 107 + . gene_id 8 ; sequence CbirOr314 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478630 478815 . + . KQ414815.1 exonerate:protein2genome:local exon 478630 478815 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478630 478815 107 + . alignment_id 8 ; Query CbirOr314 ; Align 478630 162 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr314 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 4 -> 52 Target range: 439280 -> 439424 5 : PheGluHisTyrTyrArgProThrArgIleMetLeuThrAlaLeuGlyLeuTrpProT : 24 |||.!. ! ! |||||| !! !|||:!!||||||:!! !|||||||||||||||| PheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyLeuTrpProT 439281 : TTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGCTAGGACTCTGGCCTT : 439338 25 : yrAsnAspSerIlePheThrCysIleGlnLysIlePhePheAlaLeuLeuLeuGlyPh : 43 ||::!.!.||||||!:!!:! |||!!.!:!|||! |||||| !:!!:!! !! yrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIleMetLeuSe 439339 : ATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGATTATGCTTTC : 439395 44 : eSerIleCysLeuGlnIleGlyLysIle : 52 !!!||| !!!:!!:!: !:!!||| rCysIleIlePheGluValMetGlnIle 439396 : GTGTATTATATTTGAGGTGATGCAAATA : 439424 vulgar: CbirOr314 4 52 . KQ414815.1 439280 439424 + 104 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439281 439424 104 + . gene_id 9 ; sequence CbirOr314 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 439281 439424 . + . KQ414815.1 exonerate:protein2genome:local exon 439281 439424 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 439281 439424 104 + . alignment_id 9 ; Query CbirOr314 ; Align 439281 5 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr314 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 4 -> 52 Target range: 443390 -> 443534 5 : PheGluHisTyrTyrArgProThrArgIleMetLeuThrAlaLeuGlyLeuTrpProT : 24 |||.!. ! ! |||||| !! !|||:!!||||||:!! !|||||||||||||||| PheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyLeuTrpProT 443391 : TTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGTTAGGACTCTGGCCTT : 443448 25 : yrAsnAspSerIlePheThrCysIleGlnLysIlePhePheAlaLeuLeuLeuGlyPh : 43 ||::!.!.||||||!:!!:! |||!!.!:!|||! |||||| !:!!:!! !! yrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIleIleLeuSe 443449 : ATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGATTATACTTTC : 443505 44 : eSerIleCysLeuGlnIleGlyLysIle : 52 !!!||| !!!:!!:!: !:!!||| rCysIleIlePheGluValMetGlnIle 443506 : GTGTATTATATTTGAGGTGATGCAAATA : 443534 vulgar: CbirOr314 4 52 . KQ414815.1 443390 443534 + 104 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 443391 443534 104 + . gene_id 10 ; sequence CbirOr314 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 443391 443534 . + . KQ414815.1 exonerate:protein2genome:local exon 443391 443534 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 443391 443534 104 + . alignment_id 10 ; Query CbirOr314 ; Align 443391 5 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr324PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 119 -> 214 Target range: 457129 -> 457411 120 : LysArgValThrIleIleLeuThrIleProThrValCysGlyLeuCysPheAsnSerI : 139 |||::: !!::!!|||:!! !!||| !|||||| ! !!! !!!!! LysLysLysProSerMetIleThrValSerThrTyrCysGlyAlaLeuValIleThrT 457130 : aaaaaaaaaccttcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCA : 457187 140 : leMetLeuTyrSerProTyrIleLeuAspIleValMetProLysAsnGluSerTyrAl : 158 :!!! ! !! !||| :!!||||||||||||:!:||| !||||||||| ! ! hrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgPr 457188 : CGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCC : 457244 159 : aIleHisIleMetGluMetIleThrLysTyrPheArgValSerGluLysTyrTyrPhe : 177 ! !.!.:!! :!:! !.!!:!!|||||| !! !! !:!!|||||| ! oCysGluLeuTyr---LeuThrAlaGluTyrPheValAspMetLysLysTyrMetHis 457245 : CTGTGAGTTATAC---CTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCAT : 457298 178 : LeuValLeuValHisLeuAsnAlaThrCysThrAlaGlyLeuIleIleLeuIleGlyT : 197 ! !:!!:!!!.!|||:!!! !.!! ! ! !!.! !! !! |||! !!.!! TyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaA 457299 : TATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTA : 457358 198 : hrGlyThrMetMetIleSerTyrPheLysHisAlaCysGlyMetPheGluIle : 214 .!! !:!!:!::!:|||!!! !! ! !|||!.!||||||:!!|||:!!:!! snGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457359 : ACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr324PSE 119 214 . KQ414815.1 457129 457411 + 111 M 43 129 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457130 457411 111 + . gene_id 1 ; sequence CbirOr324PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457130 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457130 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457130 457411 111 + . alignment_id 1 ; Query CbirOr324PSE ; Align 457130 120 129 ; Align 457259 164 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr329INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 190 Query range: 5 -> 142 Target range: 484198 -> 486426 6 : AspGlnTyrPheAsnIleAsnArgIleLeuLeuIleAlaIleGlyLeuTrpProTyrG : 25 ..!||||||!:!!...!!||||||||||||||| .!!|||||||||! ||||||. SerGlnTyrTyrArgPheAsnArgIleLeuLeuSerThrIleGlyLeuSerProTyrA 484199 : AGTCAGTATTATAGATTCAACCGAATACTTCTCTCGACAATTGGTCTTTCACCATACA : 484256 26 : luGlnThrLysPheAlaArgPheGlnPheIlePhePhe{Cy} >>>> Target In : 38 !...!||||||!:!.!!!:!||| ! !! !|||.!!{ } 1341 snSerThrLysTyrThrLysPheTrpAsnThrPheIle{Il}-+ 484257 : ATTCGACGAAGTACACGAAATTCTGGAACACTTTCATC{AT}tt.............. : 484299 39 : tron 1 >>>> {s}AlaAsnLeuMetAlaLeuIleIlePheGlnValIleAlaVal : 52 bp { }.!!!:!:!!:!:.!! !! !|||.!! !|||||| !! ! +-{e}ThrSerIleLeuThrAsnSerIleIleAlaValIleIleGly 484300 : ...........at{A}ACAAGTATTTTAACGAACAGTATTATTGCAGTAATTATCGGT : 485678 53 : CysSerLeuPheIleLeuIleIleSerGlnThrTrpMetAspIleCysAspValValL : 72 ||||||.!!:!:||||||:!!.!! ! ! ! ..!||| |||:!!:!!: ProSerLeuLeuValLeuIleLeuGlyIlePheAsnAsnSerIleLeuAspIleLeuI 485679 : CCATCGTTACTTGTGCTGATTCTTGGTATATTTAACAACAGTATTCTGGACATTTTGA : 485738 73 : euArgIleAsnThrSerArgSerHisAsnLeuMetIleMetThrGluTyrPheValAs : 91 !!! !:!:||| !!!!||| !!!..!..:!! |||! :!!|||:!!|||||||| leProLeuAsnTyrThrArgProArgThrIleProIleAsnSerGluHisPheValAs 485739 : TTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACTCGGAACATTTTGTCGA : 485795 92 : pGlnGluLysTyrTyrTyrPheIleLeuLeuHisIleAsnValThrValSerIleAla : 110 ||||:!!||||||!:!||| !||| ! !|||:!! !:!! !|||! !|||!.! pGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLeuPheValIleIleGly 485796 : TCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCTCTTCGTCATTATTGGC : 485852 111 : IlePheSerValMetAlaMetGlyThrMetPheLeuThrPhePheGlnTyrSerTyrG : 130 .!. !:!!:!:::! :::...:::.!!.!..!.|||:!!!!!! !| AlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIleIleGlnHisThrCysG 485853 : GCGATAGTATTACTCAGCaccgaaatattaattatggCGATAATACAGCACACCTGTG : 485912 131 : lyMetPheArgIleAla{Se} >>>> Target Intron 2 >>>> {r}TyrAr : 138 ||:!!!:!! !|||!.!{.!} 476 bp {!}||||| lyLeuTyrThrIleVal{Gl}++ ++{y}TyrAr 485913 : GTTTGTATACAATCGTT{GG}gt.........................ag{C}TATCG : 486412 139 : gIleGluHisSer : 142 ||||!!:|||!!! gIleAspHisThr 486413 : TATAGATCACACG : 486426 vulgar: CbirOr329INT 5 142 . KQ414815.1 484198 486426 + 190 M 32 96 S 0 2 5 0 2 I 0 1337 3 0 2 S 1 1 M 97 291 S 0 2 5 0 2 I 0 472 3 0 2 S 1 1 M 6 18 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 484199 486426 190 + . gene_id 1 ; sequence CbirOr329INT ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 484199 484296 . + . KQ414815.1 exonerate:protein2genome:local exon 484199 484296 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 484297 484298 . + . intron_id 1 ; splice_site "TT" KQ414815.1 exonerate:protein2genome:local intron 484297 485637 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 485636 485637 . + . intron_id 0 ; splice_site "AT" KQ414815.1 exonerate:protein2genome:local cds 485638 485931 . + . KQ414815.1 exonerate:protein2genome:local exon 485638 485931 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 485932 485933 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 485932 486407 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 486406 486407 . + . intron_id 1 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 486408 486426 . + . KQ414815.1 exonerate:protein2genome:local exon 486408 486426 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 484199 486426 190 + . alignment_id 1 ; Query CbirOr329INT ; Align 484199 6 96 ; Align 485639 39 291 ; Align 486409 137 18 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr329INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 7 -> 134 Target range: 480961 -> 482235 8 : TyrPheAsnIleAsnArgIleLeuLeuIleAlaIleGlyLeuTrpProTyrGluGlnT : 27 |||!:!!!.:!:!:!! !.!!:!!||| !||||||||||||||||||:::::: TyrTyrLysLeuSerIlePheIleLeuSerTrpIleGlyLeuTrpProTyrLysLysL 480962 : TATTACAAACTGAGCATTTTTATATTGTCGTGGATAGGATTGTGGCCGTACaagaaat : 481019 28 : hrLysPheAlaArgPheGlnPheIlePhePheCysAlaAsnLeuMetAlaLeuIleIl : 46 |||||| !!.!! ! !:!! !.!! !! !! !! !:!!:!! !||||| euLysPheGlnTrpLeuTyrAsnValAlaIleSerLeuIleSerLeuSerThrIleIl 481020 : tgaagtttcaaTGGCTTTATAATGTCGCCATCAGCCTCATTTCTTTGTCCACTATAAT : 481076 47 : ePheGlnValIleAlaValCysSer{L} >>>> Target Intron 1 >>>> { : 55 | !|||||| ! ! ! !{|} 893 bp { eProGlnValCysArgSerThrLeu{L}++ -+{ 481077 : TCCCCAGGTATGTCGTTCCACACTT{t}gt.........................gg{ : 481997 56 : eu}PheIleLeuIleIleSerGlnThrTrpMetAspIleCysAspValValLeuArgI : 74 ||}!!.|||||||||:!:!!!!!.! !! !! !:!! ||||||:!!:!!! !: eu}LeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValProL 481998 : TG}TTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTCCTC : 482053 75 : leAsnThrSerArgSerHisAsnLeuMetIleMetThrGluTyrPheValAspGlnGl : 93 !!||| !!!!|||!!!|||.!.!!! :!! ! !|||||||||:!!||||||:! euAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGlnGl 482054 : TAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCAGCA : 482110 94 : uLysTyrTyrTyrPheIleLeuLeuHisIleAsnValThrValSerIleAlaIlePhe : 112 !||||||! !|||||| !!!!||| !!:!! !! !:!!!.! ! nLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAlaThr 482111 : GAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCAACG : 482167 113 : SerValMetAlaMetGlyThrMetPheLeuThrPhePheGlnTyrSerTyrGlyMetP : 132 ! !:!!:!:!.!!!:! !|||:!!.!!:!!! !!::.!!:!!:!!:!! .!!:!!| IleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerLeuP 482168 : ATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCTTGT : 482227 133 : heArgIle : 134 ||! !:!! heThrLeu 482228 : TCACCCTT : 482235 vulgar: CbirOr329INT 7 134 . KQ414815.1 480961 482235 + 138 M 47 141 S 0 1 5 0 2 I 0 889 3 0 2 S 1 2 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 480962 482235 138 + . gene_id 2 ; sequence CbirOr329INT ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 480962 481103 . + . KQ414815.1 exonerate:protein2genome:local exon 480962 481103 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 481104 481105 . + . intron_id 1 ; splice_site "gt" KQ414815.1 exonerate:protein2genome:local intron 481104 481996 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 481995 481996 . + . intron_id 0 ; splice_site "GG" KQ414815.1 exonerate:protein2genome:local cds 481997 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481997 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 480962 482235 138 + . alignment_id 2 ; Query CbirOr329INT ; Align 480962 8 141 ; Align 481999 56 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr329INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 212 -> 299 Target range: 445588 -> 445955 213 : AsnAspIleIleGluValValProHisLeuIleTyrValPheAlaIleThrLeuTyrM : 232 |||||| !:!:|||:!!:!! ! !:!!!!: !||| ! ! !! !:!!!:!: AsnAspGlnLeuGluIleLeuLeuSerIleMetIleValSerAsnHisIleValPheL 445589 : AATGATCAATTGGAGATACTGTTAAGTATCATGATCGTCAGTAATCACATAGTGTTCC : 445646 233 : etPheValSerCysTyrIleGlyGlnGluLeuThrAspHisSerLysGluValPheLe : 251 !!||| !!!:! !||| !|||||| !|||! !:!!||||||:!!|||||||||:! euPhePheAsnAsnTyrAlaGlyGlnLeuLeuIleAsnHisSerGluGluValPheVa 445647 : TGTTCTTTAACAACTACGCAGGACAGTTACTGATAAACCATAGCGAAGAAGTCTTCGT : 445703 252 : uAla{Al} >>>> Target Intron 1 >>>> {a}TyrAsnIleGlnTrpTyr : 259 !! !{:!} 106 bp {!}|||||| ! |||||| lGlu{Se}++ ++{r}TyrAsnSerThrTrpTyr 445704 : TGAA{TC}gt.........................ag{A}TACAATTCTACTTGGTAT : 445833 260 : LeuAsnProValArgIleGlnLysLeuIleLeuPheLeuLeuGlnArgGlyIleThrA : 279 ! ! !|||:!!!!! |||||||||:!!||||||:!!:!!..!!:!.!!! ! ! CysValProLeuSerAlaGlnLysLeuLeuLeuPheIleMetMetLysSerThrIleP 445834 : TGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCATGATGAAAAGTACGATCC : 445893 280 : spPheAsnValThrIleGlyArgLeuPheIleProSerPheGluCysPheAlaMetLe : 298 ! !!!.:!!!.!:!!..! !!:!!||| !|||!!!!:!:!! !!|||:!! !:! roCysLysIleAsnLeuSerGlyIlePheAlaProCysTyrLysGlyPheSerSerVa 445894 : CATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTACAAAGGTTTTTCCTCGGT : 445950 299 : uIle : 299 !||| lIle 445951 : AATT : 445955 vulgar: CbirOr329INT 212 299 . KQ414815.1 445588 445955 + 130 M 40 120 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445589 445955 130 + . gene_id 3 ; sequence CbirOr329INT ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 445589 445710 . + . KQ414815.1 exonerate:protein2genome:local exon 445589 445710 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445711 445712 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445711 445816 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 445815 445816 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 445817 445955 . + . KQ414815.1 exonerate:protein2genome:local exon 445817 445955 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445589 445955 130 + . alignment_id 3 ; Query CbirOr329INT ; Align 445589 213 120 ; Align 445818 254 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr329INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 212 -> 299 Target range: 441476 -> 441843 213 : AsnAspIleIleGluValValProHisLeuIleTyrValPheAlaIleThrLeuTyrM : 232 |||||| !:!:|||:!!:!! ! !:!!!!: !||| ! ! !! !:!!!:!: AsnAspGlnLeuGluIleLeuLeuSerIleMetIleValSerAsnHisIleValPheL 441477 : AATGATCAATTGGAGATACTGTTAAGTATCATGATCGTCAGTAATCACATAGTGTTCC : 441534 233 : etPheValSerCysTyrIleGlyGlnGluLeuThrAspHisSerLysGluValPheLe : 251 !!||| !!!:! !||| !|||||| !|||! !:!!||||||:!!|||||||||:! euPhePheAsnAsnTyrAlaGlyGlnLeuLeuIleAsnHisSerGluGluValPheVa 441535 : TGTTCTTTAACAACTACGCAGGACAGTTACTGATAAACCATAGCGAAGAAGTCTTCGT : 441591 252 : uAla{Al} >>>> Target Intron 1 >>>> {a}TyrAsnIleGlnTrpTyr : 259 !! !{:!} 106 bp {!}|||||| ! |||||| lGlu{Se}++ ++{r}TyrAsnSerThrTrpTyr 441592 : TGAA{TC}gt.........................ag{A}TACAATTCTACTTGGTAT : 441721 260 : LeuAsnProValArgIleGlnLysLeuIleLeuPheLeuLeuGlnArgGlyIleThrA : 279 ! ! !|||:!!!!! |||||||||:!!||||||:!!:!!..!!:!.!!! ! ! CysValProLeuSerAlaGlnLysLeuLeuLeuPheIleMetMetLysSerThrIleP 441722 : TGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCATGATGAAAAGTACGATCC : 441781 280 : spPheAsnValThrIleGlyArgLeuPheIleProSerPheGluCysPheAlaMetLe : 298 ! !!!.:!!!.!:!!..! !!:!!||| !|||!!!!:!:!! !!|||:!! !:! roCysLysMetAsnLeuSerGlyIlePheAlaProCysTyrLysGlyPheSerSerVa 441782 : CATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTACAAAGGTTTTTCCTCGGT : 441838 299 : uIle : 299 !||| lIle 441839 : AATT : 441843 vulgar: CbirOr329INT 212 299 . KQ414815.1 441476 441843 + 127 M 40 120 S 0 2 5 0 2 I 0 102 3 0 2 S 1 1 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441477 441843 127 + . gene_id 4 ; sequence CbirOr329INT ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 441477 441598 . + . KQ414815.1 exonerate:protein2genome:local exon 441477 441598 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 441599 441600 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 441599 441704 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 441703 441704 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 441705 441843 . + . KQ414815.1 exonerate:protein2genome:local exon 441705 441843 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441477 441843 127 + . alignment_id 4 ; Query CbirOr329INT ; Align 441477 213 120 ; Align 441706 254 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr329INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 5 -> 61 Target range: 439283 -> 439451 6 : AspGlnTyrPheAsnIleAsnArgIleLeuLeuIleAlaIleGlyLeuTrpProTyrG : 25 :!!:!! ! !:!!..! ! !!|||:!!:!!||| ! !:!!|||||||||||||||. AsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyLeuTrpProTyrS 439284 : AACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGCTAGGACTCTGGCCTTATT : 439341 26 : luGlnThrLysPheAlaArgPheGlnPheIlePhePheCysAlaAsnLeuMetAlaLe : 44 ..|||:!!! !:!::!! !.!!!!. |||! |||..!.!!! !:!!:!::!!! erGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIleMetLeuSerCy 439342 : CTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGATTATGCTTTCGTG : 439398 45 : uIleIlePheGlnValIleAlaValCysSerLeuPheIleLeuIleIleSer : 61 !|||||||||:!!|||!!: !:!! |||||||||||| :!!||| sIleIlePheGluValMetGlnIleArgPheLeuPheIleLeuTrpValSer 439399 : TATTATATTTGAGGTGATGCAAATAcggtttctttttatcttatGGGTATCA : 439451 vulgar: CbirOr329INT 5 61 . KQ414815.1 439283 439451 + 100 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439284 439451 100 + . gene_id 5 ; sequence CbirOr329INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 439284 439451 . + . KQ414815.1 exonerate:protein2genome:local exon 439284 439451 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 439284 439451 100 + . alignment_id 5 ; Query CbirOr329INT ; Align 439284 6 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr329INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 5 -> 61 Target range: 443393 -> 443561 6 : AspGlnTyrPheAsnIleAsnArgIleLeuLeuIleAlaIleGlyLeuTrpProTyrG : 25 :!!:!! ! !:!!..! ! !!|||:!!:!!||| ! !:!!|||||||||||||||. AsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyLeuTrpProTyrS 443394 : AACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGTTAGGACTCTGGCCTTATT : 443451 26 : luGlnThrLysPheAlaArgPheGlnPheIlePhePheCysAlaAsnLeuMetAlaLe : 44 ..|||:!!! !:!::!! !.!!!!. |||! |||..!.!!! !:!!:!::!!! erGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIleIleLeuSerCy 443452 : CTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGATTATACTTTCGTG : 443508 45 : uIleIlePheGlnValIleAlaValCysSerLeuPheIleLeuIleIleSer : 61 !|||||||||:!!|||!!: !:!! |||||||||||| :!!||| sIleIlePheGluValMetGlnIleArgPheLeuPheIleLeuTrpValSer 443509 : TATTATATTTGAGGTGATGCAAATAcggtttctttttatcttatGGGTATCA : 443561 vulgar: CbirOr329INT 5 61 . KQ414815.1 443393 443561 + 100 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 443394 443561 100 + . gene_id 6 ; sequence CbirOr329INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 443394 443561 . + . KQ414815.1 exonerate:protein2genome:local exon 443394 443561 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 443394 443561 100 + . alignment_id 6 ; Query CbirOr329INT ; Align 443394 6 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr322 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 128 -> 214 Target range: 485671 -> 485929 129 : IleValTyrProGlyThrLeuAlaPheIleLeuThrMetPheValProAspValLeuA : 148 |||:!! !|||..! !|||!.!.!.|||||| !!!:||| ! !..!:!!|||| IleIleGlyProSerLeuLeuValLeuIleLeuGlyIlePheAsnAsnSerIleLeuA 485672 : ATTATCGGTCCATCGTTACTTGTGCTGATTCTTGGTATATTTAACAACAGTATTCTGG : 485729 149 : spIleIleThrProLeuAspGluProArgProArgGlnLeuProValGlnIleGluPh : 167 |||||:!:! !||||||:!! ! !!||||||||| !:!!|||:!!.!. ||| spIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnSerGluHi 485730 : ACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACTCGGAACA : 485786 168 : ePhePheAspGlnAspArgTyrPheTyrLeuPheSerPheIlePheIleIleValAla : 186 !||| !!||||||.!.!:!|||||||||! !.!!:!! ! !!:!!:!! !!!.! sPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLeuPheVal 485787 : TTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCTCTTCGTC : 485843 187 : PheLeuGlyMetThrValLeuMetAlaThrGluAsnMetTyrMetLeuPheThrGlnH : 206 .!!:!!||| !! !||||||:!:::!|||||| ::: ||| !.!.! !|||| IleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIleIleGlnH 485844 : ATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATAATACAGC : 485903 207 : isAlaCysGlyLeuPheLysLeuLeu : 214 ||.!!|||||||||!:!! !:!!:!! isThrCysGlyLeuTyrThrIleVal 485904 : ACACCTGTGGTTTGTATACAATCGTT : 485929 vulgar: CbirOr322 128 214 . KQ414815.1 485671 485929 + 178 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485672 485929 178 + . gene_id 1 ; sequence CbirOr322 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485672 485929 . + . KQ414815.1 exonerate:protein2genome:local exon 485672 485929 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485672 485929 178 + . alignment_id 1 ; Query CbirOr322 ; Align 485672 129 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr322 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 176 Query range: 117 -> 213 Target range: 448004 -> 448295 118 : AsnAlaLysPheTyrThrIlePheSerGlySerIleValTyrPro<->GlyThrLeuA : 136 ||| ...::: ||||||::: |||:::|||!:! !! ..! !:!!: AsnPheIleIlePheLeuIlePheThrIleSerValValPheAlaLeuSerLeuIleS 448005 : aattttattatctttctcattttcacaatttcagtGGTGTTTGCCTTGTCTTTAATTA : 448062 137 : laPheIleLeuThrMetPheValProAspValLeuAspIleIleThrProLeuAspGl : 155 :!|||! !|||..! !|||||| ! |||||||||:::! !|||:!!:!!! erPheThrLeuValGluPheValValHisPheLeuAspIleLeuMetProMetAsnVa 448063 : GCTTTACCTTGGTTGAGTTCGTGGTAcattttctcgatattttaATGCCAATGAACGT : 448119 156 : uProArgProArgGlnLeuProValGlnIleGluPhePhePheAspGlnAspArgTyr : 174 ! !!! !! !!.!:!!|||||| !!! !|||:!!! !|||! !|||||||||!:!!:! lSerThrArgHisGluLeuProPheLeuIleGlnCysPheCysAspGlnAspLysPhe 448120 : ATCTACACGGCACGAGCTACCCTTCCTAATTCAATGTTTCTGTGATCAAGATAAATTC : 448176 175 : PheTyrLeuPheSerPheIlePheIleIleValAlaPheLeuGlyMetThrValLeuM : 194 |||:!!! !.!.! ! !!.!!!!.|||:!!:!!.!!.!!|||||| !:!|||:!!: PheHisTyrIleLeuValPheLeuIleValLeuThrIleLeuGlyGlySerValValL 448177 : TTCCACTATATATTAGTTTTCTTGATCGTTCTCACTATTTTGGGTGGAAGTGTGGTAT : 448236 195 : etAlaThrGluAsnMetTyrMetLeuPheThrGlnHisAlaCysGlyLeuPheLysLe : 213 !:|||||| !!..! |||:!!:!!|||!:!||||||..!|||||||||||||||:! euAlaThrThrThrThrTyrLeuIlePheSerGlnHisCysCysGlyLeuPheLysIl 448237 : TAGCCACTACAACGACTTACTTGATATTCAGTCAACATTGTTGTGGATTGTTCAAAAT : 448293 214 : u : 213 ! e 448294 : T : 448295 vulgar: CbirOr322 117 213 . KQ414815.1 448004 448295 + 176 M 15 45 G 0 3 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448005 448295 176 + . gene_id 2 ; sequence CbirOr322 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448005 448295 . + . KQ414815.1 exonerate:protein2genome:local exon 448005 448295 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448005 448295 176 + . alignment_id 2 ; Query CbirOr322 ; Align 448005 118 45 ; Align 448053 133 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr322 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 129 -> 213 Target range: 457159 -> 457411 130 : ValTyrProGlyThrLeuAlaPheIleLeuThrMetPheValProAspValLeuAspI : 149 ..!||| !|||.!!|||!.!.!!! ! ! !....!! !!||| :!!||||||| ThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspI 457160 : ACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACA : 457217 150 : leIleThrProLeuAspGluProArgProArgGlnLeuProValGlnIleGluPhePh : 168 ||:!:..!||||||:!!||| !!|||||| !!:!!||| !:!! ! |||!:!|| leValValProLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPh 457218 : TTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTT : 457274 169 : ePheAspGlnAspArgTyrPheTyrLeuPheSerPheIlePheIleIleValAlaPhe : 187 | !!|||..! ! !:!|||.!.:!!! !.!!! ! !.!!|||! ! !.!. eValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeu 457275 : TGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTG : 457331 188 : LeuGlyMetThrValLeuMetAlaThrGluAsnMetTyrMetLeuPheThrGlnHisA : 207 :!!!.! |||..!|||! |||!.!|||::!:!: !!!: ! !..!! !|||! IleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisV 457332 : ATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACG : 457391 208 : laCysGlyLeuPheLysLeu : 213 .!|||||||||||||||||| alCysGlyLeuPheLysLeu 457392 : TTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr322 129 213 . KQ414815.1 457159 457411 + 138 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457160 457411 138 + . gene_id 3 ; sequence CbirOr322 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457160 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457160 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457160 457411 138 + . alignment_id 3 ; Query CbirOr322 ; Align 457160 130 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr322 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 131 -> 213 Target range: 464591 -> 464840 132 : ProGlyThrLeuAlaPheIleLeuThrMetPheValProAspValLeuAspIleIleT : 151 |||! !! !||| !.!! !||| ! ! :!!||||||:!!||||||:!::!!. ProValIleLeuPheIleCysLeuLeuGluValLeuProAspIleLeuAspValValA 464592 : CCCGTTATACTGTTCATCTGTTTACTCGAAGTATTGCCAGATATTCTCGACGTGGTTG : 464649 152 : hrProLeuAspGluProArgProArgGlnLeuProValGlnIleGluPhePhePheAs : 170 !!||||||:!!||| !!||| !!!.!|||! ! !:!! |||||||||.!! laProLeuAsnGluSerArgSerHisGlnTyrLeuIleThrAlaGluPhePheIleTh 464650 : CGCCCCTCAATGAATCTCGTTCTCATCAATACTTAATTACCGCGGAATTTTTCATCAC : 464706 171 : pGlnAspArgTyrPheTyrLeuPheSerPheIlePheIle<->IleValAlaPheLeu : 188 !.!...! ! !|||:!! ! !!!! !:!! !! |||..! !.!!:!! rAspSerSerProAsnTyrIleValThrCysValGlyThrAspIleThrLeuIleMet 464707 : TGATAGTTCGCCGAATTATATCGTAACTTGTGTTGGTACGGATATTACTCTTATCATG : 464763 189 : GlyMetThrValLeuMetAlaThrGluAsnMetTyrMetLeuPheThrGlnHisAlaC : 208 |||:!:|||..!:!!!!:|||:!!|||!...!. !.!.|||!!. !|||||| !| GlyValThrThrIleIleAlaSerGluThrPheThrPheLeuLeuLeuGlnHisIleC 464764 : GGAGTCACGACAATAATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGCAACATATCT : 464823 209 : ysGlyLeuPheLysLeu : 213 ||!.!:!!||||||:!! ysAlaMetPheLysIle 464824 : GCGCAATGTTCAAAATC : 464840 vulgar: CbirOr322 131 213 . KQ414815.1 464591 464840 + 123 M 52 156 G 0 3 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464592 464840 123 + . gene_id 4 ; sequence CbirOr322 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464592 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464592 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464592 464840 123 + . alignment_id 4 ; Query CbirOr322 ; Align 464592 132 156 ; Align 464751 184 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr322 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 332 -> 382 Target range: 454307 -> 454457 333 : CysAsnAlaGlnTrpTyrThrAlaProLeuHisSerGlnLysLeuLeuLeuMetValL : 352 ||||||:!!!!.|||||| !!.!|||||| !!:!!!:!||||||! !|||:!::!!| CysAsnSerHisTrpTyrAspValProLeuAspAlaArgLysLeuTyrLeuLeuIleL 454308 : TGCAATTCACACTGGTACGATGTTCCTCTTGATGCTCGAAAGTTGTACCTACTCATTC : 454365 353 : euArgArgSerMetLysSerThrAlaIleIleValGlyGlyLeuPheIleProSerLe : 371 ||!:!|||||||||||||||:!!:!!.!! !:!!..!! !|||!:!:!! !!||||| euGlnArgSerMetLysSerSerSerPheSerIleSerAspLeuTyrValSerSerLe 454366 : TGCAACGAAGTATGAAAAGCTCCTCGTTCTCCATATCCGATTTATACGTTTCGTCGTT : 454422 372 : uGluGlyPheAlaThrLeuIleSerMetSerLeu : 382 |:!!|||.!.::!.!!:!!! !..!.!. !!||| uGlnGlyLeuSerAlaValThrGluPheProLeu 454423 : ACAGGGACTAAGCGCGGTAACAGAATTTCCCTTG : 454457 vulgar: CbirOr322 332 382 . KQ414815.1 454307 454457 + 121 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 454308 454457 121 + . gene_id 5 ; sequence CbirOr322 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 454308 454457 . + . KQ414815.1 exonerate:protein2genome:local exon 454308 454457 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 454308 454457 121 + . alignment_id 5 ; Query CbirOr322 ; Align 454308 333 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr322 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 333 -> 375 Target range: 465782 -> 465908 334 : AsnAlaGlnTrpTyrThrAlaProLeuHisSerGlnLysLeuLeuLeuMetValLeuA : 353 :!!.!!|||||||||! ! !||||||! !:!!|||||||||:!!:!!.!.:!!:!!! AspThrGlnTrpTyrArgLeuProLeuProAlaGlnLysLeuValIlePheIleMetG 465783 : GATACGCAATGGTATAGACTTCCTTTACCTGCACAAAAATTAGTGATTTTCATTATGC : 465840 354 : rgArgSerMetLysSerThrAlaIleIleValGlyGlyLeuPheIleProSerLeuGl : 372 :!|||||||||||||||!.!!.!.!!! !||| !! !|||!:!:!!||||||! !:! lnArgSerMetLysSerAsnValPheThrValCysLysLeuTyrValProSerArgGl 465841 : AAAGAAGCATGAAAAGTAATGTGTTCACAGTGTGCAAACTCTACGTTCCCTCGCGACA : 465897 373 : uGlyPheAla : 375 !||| !!||| nGlyValAla 465898 : AGGTGTCGCA : 465908 vulgar: CbirOr322 333 375 . KQ414815.1 465782 465908 + 106 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 465783 465908 106 + . gene_id 6 ; sequence CbirOr322 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 465783 465908 . + . KQ414815.1 exonerate:protein2genome:local exon 465783 465908 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 465783 465908 106 + . alignment_id 6 ; Query CbirOr322 ; Align 465783 334 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr322 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 327 -> 374 Target range: 490185 -> 490326 328 : LeuLeuGlnGlnIleCysAsnAlaGlnTrpTyrThrAlaProLeuHisSerGlnLysL : 347 :!!|||.!.::! ! !!:!!.!.!.|||||||||||||||:!! !! !||||||| IleLeuAsnArgCysAsnSerValAsnTrpTyrThrAlaProIleAlaIleGlnLysL 490186 : ATACTTAATAGATGCAACAGCGTGAATTGGTACACGGCTCCAATTGCCATACAAAAAT : 490243 348 : euLeuLeuMetValLeuArgArgSerMetLysSerThrAlaIleIleValGlyGlyLe : 366 ||||||||!!::!!:!!!:!!.!!!!!!:::!!:!:!!:!!|||! !:!! !|||:! euLeuLeuIleIleMetGlnAsnThrIleArgAsnSerSerIleThrLeuPheGlyMe 490244 : TGCTGTTGATCATTATGCAAAATACTATACGAAATTCTTCAATAACACTCTTCGGAAT : 490300 367 : uPheIleProSerLeuGluGlyPhe : 374 !!:!||| !!|||!!!!!:|||||| tTyrIleSerSerPheAspGlyPhe 490301 : GTATATATCGTCTTTCGATGGTTTC : 490326 vulgar: CbirOr322 327 374 . KQ414815.1 490185 490326 + 105 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 490186 490326 105 + . gene_id 7 ; sequence CbirOr322 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 490186 490326 . + . KQ414815.1 exonerate:protein2genome:local exon 490186 490326 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 490186 490326 105 + . alignment_id 7 ; Query CbirOr322 ; Align 490186 328 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr322 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 333 -> 387 Target range: 445820 -> 445982 334 : AsnAlaGlnTrpTyrThrAlaProLeuHisSerGlnLysLeuLeuLeuMetValLeuA : 353 |||:!! |||||| !!.!|||||| !:!!|||||||||||||||.!.:!!:!!! AsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleMetM 445821 : AATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCATGA : 445878 354 : rgArgSerMetLysSerThrAlaIleIleValGlyGlyLeuPheIleProSerLeuGl : 372 !!:!|||! !! !! ! !|||! !:!!..!|||:!!||| !|||!!!! !:! etLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTyrLy 445879 : TGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTACAA : 445935 373 : uGlyPheAlaThrLeuIleSerMetSerLeuSerTyrCysMetVal : 387 !||||||:!!:!!:!!|||!!!:!:! !|||! !:!! :::::: sGlyPheSerSerValIleCysLeuLeuLeuPheHisGlnLeuIle 445936 : AGGTTTTTCCTCGGTAATTTGTCTTTTGCTATTTCATCagttaatt : 445982 vulgar: CbirOr322 333 387 . KQ414815.1 445820 445982 + 104 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445821 445982 104 + . gene_id 8 ; sequence CbirOr322 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445821 445982 . + . KQ414815.1 exonerate:protein2genome:local exon 445821 445982 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445821 445982 104 + . alignment_id 8 ; Query CbirOr322 ; Align 445821 334 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr322 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 333 -> 387 Target range: 441708 -> 441870 334 : AsnAlaGlnTrpTyrThrAlaProLeuHisSerGlnLysLeuLeuLeuMetValLeuA : 353 |||:!! |||||| !!.!|||||| !:!!|||||||||||||||.!.:!!:!!! AsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleMetM 441709 : AATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCATGA : 441766 354 : rgArgSerMetLysSerThrAlaIleIleValGlyGlyLeuPheIleProSerLeuGl : 372 !!:!|||! !! !! ! !!!:! !:!!..!|||:!!||| !|||!!!! !:! etLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTyrLy 441767 : TGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTACAA : 441823 373 : uGlyPheAlaThrLeuIleSerMetSerLeuSerTyrCysMetVal : 387 !||||||:!!:!!:!!|||!!!:!:! !|||! !:!! :::::: sGlyPheSerSerValIleCysLeuLeuLeuPheHisGlnLeuIle 441824 : AGGTTTTTCCTCGGTAATTTGTCTTTTGCTATTTCATCagttaatt : 441870 vulgar: CbirOr322 333 387 . KQ414815.1 441708 441870 + 101 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441709 441870 101 + . gene_id 9 ; sequence CbirOr322 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441709 441870 . + . KQ414815.1 exonerate:protein2genome:local exon 441709 441870 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441709 441870 101 + . alignment_id 9 ; Query CbirOr322 ; Align 441709 334 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr317NTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 198 Query range: 10 -> 132 Target range: 485695 -> 486531 11 : ValLeuIleTyrLeuValSerThrPheLeuSerAspThrAlaValAspValAsnGluS : 30 :!!:!!:!! !:!! !!!:!!.! !:!! !|||! ! !:!! !:!!||| ! ! LeuIleLeuGlyIlePheAsnAsnSerIleLeuAspIleLeuIleProLeuAsnTyrT 485696 : CTGATTCTTGGTATATTTAACAACAGTATTCTGGACATTTTGATTCCTTTGAATTACA : 485753 31 : erAsnIleArgAsnLeuProGlyLeuThrGluTyrPheIleAspGlnGlnLysTyrPh : 49 !!..! |||!..:!!||| ! !:!!|||:!!|||:!!||||||||||||||||| hrArgProArgThrIleProIleAsnSerGluHisPheValAspGlnGlnLysTyrPh 485754 : CTCGTCCGCGGACGATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTT : 485810 50 : ePheLeuIleLeuPheHisIleSerPhePheValTrpCysGlyLeuAlaValValAla : 68 |!:!! !||| ! |||:!! !.!!|||||| !||| ! !|||:!! ! eTyrProIleAlaAlaHisValValLeuPheValIleIleGlyAlaIleValLeuLeu 485811 : CTACCCTATTGCAGCACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTC : 485867 69 : AlaThrGluSerPheTyrMetSerLeuIleGlnHisAlaCysGlyLeuPheGlnIleA : 88 ::!|||||| ... |||:!!:!!|||||||||.!!|||||||||!:! !|||! SerThrGluIleLeuIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIleV 485868 : AGCaccgaaatattaattatggCGATAATACAGCACACCTGTGGTTTGTATACAATCG : 485927 89 : la{Se} >>>> Target Intron 1 >>>> {r}TyrArgIleGluGlnAlaLe : 96 .!{.!} 476 bp {!}|||||||||!!:!!..!!!! al{Gl}++ ++{y}TyrArgIleAspHisThrPh 485928 : TT{GG}gt.........................ag{C}TATCGTATAGATCACACGTT : 486427 97 : uHisLysAspLeuValArgAsnValThrSerIleValGluArgAsnThrIleIleAsn : 115 ! ! !:!!:!! ! !! !||| !!.!||||||!....!:!!|||:!! eValAlaAsnIleProGly------LeuSerProAlaGluArgArgValLeuIleHis 486428 : TGTTGCAAACATACCAGGA------CTTTCTCCTGCGGAAAGGAGAGTTCTAATTCAC : 486478 116 : ArgLysLeuIleSerGlyIleAsnMetHisLysArgAlaIleGluPheVal : 132 ||||||:!!:!!||| !:!:|||:!!|||||||||!.!! |||!!.||| ArgLysIleValSerLeuValAsnLeuHisLysArgValLysGluLeuVal 486479 : AGAAAAATAGTCTCGCTCGTGAATTTGCACAAAAGAGTCAAGGAGTTAGTA : 486531 vulgar: CbirOr317NTE 10 132 . KQ414815.1 485695 486531 + 198 M 78 234 S 0 2 5 0 2 I 0 472 3 0 2 S 1 1 M 13 39 G 2 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485696 486531 198 + . gene_id 1 ; sequence CbirOr317NTE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 485696 485931 . + . KQ414815.1 exonerate:protein2genome:local exon 485696 485931 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 485932 485933 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 485932 486407 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 486406 486407 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 486408 486531 . + . KQ414815.1 exonerate:protein2genome:local exon 486408 486531 . + . insertions 0 ; deletions 2 KQ414815.1 exonerate:protein2genome:local similarity 485696 486531 198 + . alignment_id 1 ; Query CbirOr317NTE ; Align 485696 11 234 ; Align 486409 90 39 ; Align 486448 105 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr317NTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 4 -> 132 Target range: 448049 -> 448671 5 : LeuSerAlaPheGlyPheValLeuIleTyrLeuValSerThrPheLeuSerAspThrA : 24 |||||| !.!!.!!|||..!|||:!! ! !!!||| ! |||||| ||| LeuSerLeuIleSerPheThrLeuValGluPheValValHisPheLeu---AspIleL 448050 : TTGTCTTTAATTAGCTTTACCTTGGTTGAGTTCGTGGTAcattttctc---gatattt : 448104 25 : laValAspValAsnGluSerAsnIleArgAsnLeuProGlyLeuThrGluTyrPheIl : 43 :!! :!!|||! !|||!.. !.!.!.|||||| !|||! !:!!! !||| euMetProMetAsnValSerThrArgHisGluLeuProPheLeuIleGlnCysPheCy 448105 : taATGCCAATGAACGTATCTACACGGCACGAGCTACCCTTCCTAATTCAATGTTTCTG : 448161 44 : eAspGlnGlnLysTyrPhePheLeuIleLeuPheHisIleSerPhePheValTrpCys : 62 !||||||.!.|||!:!||| !! !|||||| !! !:!:! ! !!.!!..! ! sAspGlnAspLysPhePheHisTyrIleLeuValPheLeuIleValLeuThrIleLeu 448162 : TGATCAAGATAAATTCTTCCACTATATATTAGTTTTCTTGATCGTTCTCACTATTTTG : 448218 63 : GlyLeuAlaValValAlaAlaThrGluSerPheTyrMetSerLeuIleGlnHisAlaC : 82 ||| !::!|||||| !|||||| !!!! !|||:!!! !!!!! !||||||..!| GlyGlySerValValLeuAlaThrThrThrThrTyrLeuIlePheSerGlnHisCysC 448219 : GGTGGAAGTGTGGTATTAGCCACTACAACGACTTACTTGATATTCAGTCAACATTGTT : 448278 83 : ysGlyLeuPheGlnIleAla{Se} >>>> Target Intron 1 >>>> {r}Ty : 90 |||||||||||:!!||||||{.!} 247 bp {!}|| ysGlyLeuPheLysIleAla{Gl}++ ++{y}Ty 448279 : GTGGATTGTTCAAAATTGCA{GG}gt.........................ag{t}TA : 448549 91 : rArgIleGluGlnAlaLeuHisLysAspLeuValArgAsnValThrSerIleValGlu : 109 |!:!|||:!!!!. !||| !!!!.||| ! !!..! ..!||| !:!!!!: rLysIleGlnHisLeuLeuAspAsnAspGluPheGlu------ValSerAspIleAsp 448550 : CAAAATACAACATTTATTAGACAACGACGAGTTTGAA------GTTTCTGATATCGAT : 448600 110 : ArgAsnThrIleIleAsnArgLysLeuIleSerGlyIleAsnMetHisLysArgAlaI : 129 !:!||| !! !:!! !!! !!:!:!!|||!:!!.!:!:!!.|||||||||||||||: GlnAsnLeuThrValTyrLeuArgIleIleAsnAlaValLysMetHisLysArgAlaL 448601 : CAAAATCTCACAGTTTACCTGAGGATAATTAATGCTGTGAAAATGCATAAGCGAGCTC : 448660 130 : leGluPheVal : 132 !!! !!!.||| euValLeuVal 448661 : TCGTGTTAGTA : 448671 vulgar: CbirOr317NTE 4 132 . KQ414815.1 448049 448671 + 170 M 16 48 G 1 0 M 67 201 S 0 2 5 0 2 I 0 243 3 0 2 S 1 1 M 13 39 G 2 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448050 448671 170 + . gene_id 2 ; sequence CbirOr317NTE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 448050 448300 . + . KQ414815.1 exonerate:protein2genome:local exon 448050 448300 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local splice5 448301 448302 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 448301 448547 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 448546 448547 . + . intron_id 0 ; splice_site "ag" KQ414815.1 exonerate:protein2genome:local cds 448548 448671 . + . KQ414815.1 exonerate:protein2genome:local exon 448548 448671 . + . insertions 0 ; deletions 2 KQ414815.1 exonerate:protein2genome:local similarity 448050 448671 170 + . alignment_id 2 ; Query CbirOr317NTE ; Align 448050 5 48 ; Align 448098 22 201 ; Align 448549 90 39 ; Align 448588 105 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr317NTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 163 -> 251 Target range: 468630 -> 469349 164 : LeuIleThrIleLysAspTyrArgGluLeuIleSerSerPheValPheValLeuGlyH : 183 :!!:!!|||!!: ! |||!:!..!!!:||| ! !!!:!.!. !!.!.:!!:!!|||! MetLeuThrMetAspAspPheGluAspLeuCysArgAsnIlePheLeuLeuMetGlyG 468631 : ATGCTAACAATGGACGACTTCGAAGATTTATGTCGTAACATATTCCTACTAATGGGAC : 468688 184 : isSerTrpTyrMetPhePheValAsnTyrValGlyGlnGluValValAspHisSerGl : 202 !. ! ! |||:::|||...:::||||||:::||||||!!::!!|||:!!|||!:!.. lnLeuGlyTyrLeuPheIleIleAsnTyrMetGlyGlnAspLeuValAsnHisAsnAs 468689 : AGCTTGGTtacttatttataattaattacatgGGACAGGATCTAGTCAATCACAATAA : 468745 203 : yAspValPheHisArg{Il} >>>> Target Intron 1 >>>> {e}TyrAsn : 210 !!!:||||||!!.! !{ } 452 bp {!}|||||| nGluValPheGlnThr{Al}++ ++{a}TyrAsn 468746 : CGAGGTTTTCCAAACA{GC}gt.........................ag{A}TACAAT : 469221 211 : ValGlnTrpTyrThrAlaProLeuLysAlaGlnLysLeuLeuLeuTyrLeuMetGlnA : 230 !! !||||||! !|||||| ! !.!::!|||||||||||| !:!!|||! !! SerLeuTrpTyrIleAlaProThrProValArgLysLeuLeuLeuThrMetMetLeuG 469222 : AGTCTATGGTATATAGCACCAACGCCTGTAAGGAAATTACTATTAACCATGATGCTGC : 469281 231 : rgThrMetArgHisCysThrIle<->ValIleGlyGlyLeuPheValThrSerLeuGl : 248 :!!.!:!:|||!!. !!..!.!! :!!!!:|||||||||!:!:!!|||!:!:!!:! lnAsnValArgGlnArgValPheLysLeuMetGlyGlyLeuTyrIleThrAsnIleGl 469282 : AAAATGTAAGACAGCGCGTTTTCAAGTTAATGGGAGGATTGTATATAACTAATATCGA : 469338 249 : nGlyPheAla : 251 !||||||:!! uGlyPheSer 469339 : AGGTTTTTCC : 469349 vulgar: CbirOr317NTE 163 251 . KQ414815.1 468630 469349 + 157 M 44 132 S 0 2 5 0 2 I 0 448 3 0 2 S 1 1 M 29 87 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 468631 469349 157 + . gene_id 3 ; sequence CbirOr317NTE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 468631 468764 . + . KQ414815.1 exonerate:protein2genome:local exon 468631 468764 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 468765 468766 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 468765 469216 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 469215 469216 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 469217 469349 . + . KQ414815.1 exonerate:protein2genome:local exon 469217 469349 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 468631 469349 157 + . alignment_id 3 ; Query CbirOr317NTE ; Align 468631 164 132 ; Align 469218 209 87 ; Align 469308 238 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr317NTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 202 -> 255 Target range: 490182 -> 490341 203 : AspValPheHisArgIleTyrAsnValGlnTrpTyrThrAlaProLeuLysAlaGlnL : 222 :!!:!!.!!:!!||| ! !!!:!|||.!.|||||||||||||||:!! !|||| AsnIleLeuAsnArgCysAsnSerValAsnTrpTyrThrAlaProIleAlaIleGlnL 490183 : AACATACTTAATAGATGCAACAGCGTGAATTGGTACACGGCTCCAATTGCCATACAAA : 490240 223 : ysLeuLeuLeuTyrLeuMetGlnArgThrMetArgHisCysThrIleValIleGlyGl : 241 ||||||||||| !:!!||||||!.!|||!!:|||:!!! !:!!|||..!:!! !|| ysLeuLeuLeuIleIleMetGlnAsnThrIleArgAsnSerSerIleThrLeuPheGl 490241 : AATTGCTGTTGATCATTATGCAAAATACTATACGAAATTCTTCAATAACACTCTTCGG : 490297 242 : yLeuPheValThrSerLeuGlnGlyPheAlaSerLeuThrAsn : 255 |:!!!:!:!!:!!|||!!!.!.|||||| !! !:!!!.!||| yMetTyrIleSerSerPheAspGlyPhePheMetValAsnAsn 490298 : AATGTATATATCGTCTTTCGATGGTTTCTTCATGGTAAATAAC : 490341 vulgar: CbirOr317NTE 202 255 . KQ414815.1 490182 490341 + 129 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 490183 490341 129 + . gene_id 4 ; sequence CbirOr317NTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 490183 490341 . + . KQ414815.1 exonerate:protein2genome:local exon 490183 490341 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 490183 490341 129 + . alignment_id 4 ; Query CbirOr317NTE ; Align 490183 203 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr317NTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 9 -> 87 Target range: 482001 -> 482235 10 : PheValLeuIleTyrLeuValSerThrPheLeuSerAspThrAlaValAspValAsnG : 29 .!.:!!:!!:!:! !! !:!!|||!:!|||:!! !|||..! !||| !:!!|||| IleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValProLeuAsnG 482002 : ATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTCCTCTAAACG : 482059 30 : luSerAsnIleArgAsnLeuProGlyLeuThrGluTyrPheIleAspGlnGlnLysTy : 48 ||!!!..!! !.!.!.!!!|||! !! !! !|||||||||||||||||||||||||| luThrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGlnGlnLysTy 482060 : AGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCAGCAGAAATA : 482116 49 : rPhePheLeuIleLeuPheHisIleSerPhePheValTrpCysGlyLeuAlaValVal : 67 |! .!!!!!||| !|||||| !!!|||! ! !! ! ! !.!!:!!:!! rSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAlaThrIleIle 482117 : TTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCAACGATCATT : 482173 68 : AlaAlaThrGluSerPheTyrMetSerLeuIleGlnHisAlaCysGlyLeuPheGlnI : 87 !.!!.!! !|||!!!!!. !:!:! !! !:!!:!!||||||....!!|||||| : ValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerLeuPheThrL 482174 : GTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCTTGTTCACCC : 482233 88 : le : 87 !! eu 482234 : TT : 482235 vulgar: CbirOr317NTE 9 87 . KQ414815.1 482001 482235 + 122 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482002 482235 122 + . gene_id 5 ; sequence CbirOr317NTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482002 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 482002 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482002 482235 122 + . alignment_id 5 ; Query CbirOr317NTE ; Align 482002 10 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr317NTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 208 -> 253 Target range: 445817 -> 445952 209 : TyrAsnValGlnTrpTyrThrAlaProLeuLysAlaGlnLysLeuLeuLeuTyrLeuM : 228 |||||| ! |||||| !!.!||||||!..||||||||||||||||||!:!:!!| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 229 : etGlnArgThrMetArgHisCysThrIleValIleGlyGlyLeuPheValThrSerLe : 247 ||..!!:!!:!! !! !! |||! !||| !:!!..!|||:!!|||!.! !!!!!! etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 248 : uGlnGlyPheAlaSerLeu : 253 !:!!||||||:!!|||:!! rLysGlyPheSerSerVal 445933 : CAAAGGTTTTTCCTCGGTA : 445952 vulgar: CbirOr317NTE 208 253 . KQ414815.1 445817 445952 + 112 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 445952 112 + . gene_id 6 ; sequence CbirOr317NTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445818 445952 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445952 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 445952 112 + . alignment_id 6 ; Query CbirOr317NTE ; Align 445818 209 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr317NTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 18 -> 87 Target range: 457204 -> 457411 19 : PheLeuSerAspThrAlaValAspValAsnGluSerAsnIleArgAsnLeuProGlyL : 38 .!.||| !|||! !!.!||| :!!|||||||||..! ! !!.!.||| ! ! IleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrLeuT 457205 : ATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTA : 457262 39 : euThrGluTyrPheIleAspGlnGlnLysTyrPhePheLeuIleLeuPheHisIleSe : 57 !.!!|||||||||:!!|||..!:!!||||||.!. !! !|||:!! ||||||! hrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIl 457263 : CAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTAT : 457319 58 : rPhePheValTrpCysGlyLeuAlaValValAlaAlaThrGluSerPheTyrMetSer : 76 ! ! !:!! ! !!.! !.!!..!:!!.!!|||!.!||||||!!. !!!:!!! eThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThr 457320 : CACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACG : 457376 77 : LeuIleGlnHisAlaCysGlyLeuPheGlnIle : 87 !:!!! !|||!.!||||||||||||:!!:!! AsnValLeuHisValCysGlyLeuPheLysLeu 457377 : AACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr317NTE 18 87 . KQ414815.1 457204 457411 + 110 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457205 457411 110 + . gene_id 7 ; sequence CbirOr317NTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457205 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457205 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457205 457411 110 + . alignment_id 7 ; Query CbirOr317NTE ; Align 457205 19 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr317NTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 208 -> 253 Target range: 441705 -> 441840 209 : TyrAsnValGlnTrpTyrThrAlaProLeuLysAlaGlnLysLeuLeuLeuTyrLeuM : 228 |||||| ! |||||| !!.!||||||!..||||||||||||||||||!:!:!!| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 229 : etGlnArgThrMetArgHisCysThrIleValIleGlyGlyLeuPheValThrSerLe : 247 ||..!!:!!:!! !! !! |||! !!!: !:!!..!|||:!!|||!.! !!!!!! etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 248 : uGlnGlyPheAlaSerLeu : 253 !:!!||||||:!!|||:!! rLysGlyPheSerSerVal 441821 : CAAAGGTTTTTCCTCGGTA : 441840 vulgar: CbirOr317NTE 208 253 . KQ414815.1 441705 441840 + 109 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441840 109 + . gene_id 8 ; sequence CbirOr317NTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441706 441840 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441840 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441840 109 + . alignment_id 8 ; Query CbirOr317NTE ; Align 441706 209 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr317NTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 209 -> 261 Target range: 454310 -> 454466 210 : AsnValGlnTrpTyrThrAlaProLeuLysAlaGlnLysLeuLeuLeuTyrLeuMetG : 229 ||| !!!.|||||| !!.!|||||| ! |||!:!||||||! !||| !:!!:!!| AsnSerHisTrpTyrAspValProLeuAspAlaArgLysLeuTyrLeuLeuIleLeuG 454311 : AATTCACACTGGTACGATGTTCCTCTTGATGCTCGAAAGTTGTACCTACTCATTCTGC : 454368 230 : lnArgThrMetArgHisCysThrIleValIleGlyGlyLeuPheValThrSerLeuGl : 248 |||||!:!|||!:! !! !:!!.!! !|||..!! !|||!:!|||:!!|||||||| lnArgSerMetLysSerSerSerPheSerIleSerAspLeuTyrValSerSerLeuGl 454369 : AACGAAGTATGAAAAGCTCCTCGTTCTCCATATCCGATTTATACGTTTCGTCGTTACA : 454425 249 : nGlyPheAlaSerLeuThrAsnMetSerValSerTyrPhe : 261 ||||.!.::!:!!:!!|||.!..!. !!:!!!!!:!!!:! nGlyLeuSerAlaValThrGluPheProLeu***HisTyr 454426 : GGGACTAAGCGCGGTAACAGAATTTCCCTTGTGACATTAT : 454466 vulgar: CbirOr317NTE 209 261 . KQ414815.1 454310 454466 + 109 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 454311 454466 109 + . gene_id 9 ; sequence CbirOr317NTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 454311 454466 . + . KQ414815.1 exonerate:protein2genome:local exon 454311 454466 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 454311 454466 109 + . alignment_id 9 ; Query CbirOr317NTE ; Align 454311 210 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr317NTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 29 -> 96 Target range: 478611 -> 478812 30 : SerAsnIleArgAsnLeuProGlyLeuThrGluTyrPheIleAspGlnGlnLysTyrP : 49 ...|||......... !||| !||||||||||||||||||::::::||||||| GlyAsnPheGluThrSerMetGlyThrThrGluTyrPheIleAspGluLysLysTyrP 478612 : ggaaattttgaaacatcaATGGGCACCACGGAATACTTCATTGacgagaagaaatatt : 478669 50 : hePheLeuIleLeuPheHisIleSerPhePheValTrpCysGlyLeuAlaValValAl : 68 ||......|||::: |||:!:! !.!.! :!! ! !.!!||| !!. heIlePheIleIleSerHisValTyrLeuSerLeuIleMetHisAlaThrValTyrVa 478670 : tcatatttattatttctcacGTGTACCTGTCGTTGATAATGCATGCAACTGTATACGT : 478726 69 : aAlaThrGluSerPheTyrMetSerLeuIleGlnHisAlaCysGlyLeuPheGlnIle : 87 !||||||||||||! !!:! !! !!!: !|||.!! !||||||!:!.!.||| lAlaThrGluSer***ValIleMetTrpMetValHisThrIleGlyLeuTyrAsnIle 478727 : AGCCACCGAGTCGTGAGTGATTATGTGGATGGTGCATACTATCGGCTTGTATAATATC : 478783 88 : AlaSerTyrArgIleGluGlnAlaLeu : 96 !!!!|||!.! :!!::! !:!! IleArgTyrAsnGlnGlnArgLeuIle 478784 : ATAAGGTATAATCAGCAAAGATTGATC : 478812 vulgar: CbirOr317NTE 29 96 . KQ414815.1 478611 478812 + 109 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478612 478812 109 + . gene_id 10 ; sequence CbirOr317NTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478612 478812 . + . KQ414815.1 exonerate:protein2genome:local exon 478612 478812 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478612 478812 109 + . alignment_id 10 ; Query CbirOr317NTE ; Align 478612 30 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr333CTE Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 136 -> 213 Target range: 130397 -> 130166 137 : PheIleIleAlaGlnThrTrpIleAspIlePheAspValValLeuGlnIleAsnLysS : 156 |||:!!.!! !|||! ! .!.|||!!.! !:!!:!!! !! :!!!.!:!!! PheValPheLeuGlnIleLeuProGlnIleLeuGlyIleIleSerProLeuThrGluI 130397 : TTCGTTTTCTTGCAAATTCTCCCGCAAATTTTAGGCATAATTTCACCTCTAACCGAGA : 130340 157 : erArgSerGlnSerLeuLeuIleMetThrGluTyrPheValAspGlnGluLysTyrTy : 175 !!.!!!!.!.!.!||||||:!! |||||||||||||||||| ! :!! ! ||| leAsnThrAsnLysLeuLeuValArgThrGluTyrPheValAspTyrLysAspTyrIl 130339 : TCAATACTAACAAATTACTCGTTCGAACCGAATACTTTGTCGACTACAAAGATTACAT : 130283 176 : rTyrPheMetLeuLeuHisLeuAsnIleThrValSerIleAlaValPheIlePheVal : 194 !|||.!.!!: !:!!||| !!.!|||.!!:!!! ! !::!||| !!!: :!! eTyrLeuIleThrIleHisAlaThrIleAlaIleMetCysSerValThrMetGlnIle 130282 : TTATCTAATCACGATCCACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATT : 130226 195 : AlaIleGlyThrMetPheIleThrPhePheGlnTyrIleTyrGlyLeuPheLysIle : 213 ::!! !! !! ::: |||.....!:!!||| !|||:!!|||:!!:!! SerSerAspIleLeuAsnAsnIlePheMetMetHisIleSerGlyMetPheGluVal 130225 : AGCAGCGATAttttgaataacatatttatGATGCACATCAGTGGAATGTTCGAGGTA : 130167 vulgar: CbirOr333CTE 136 213 . KQ414817.1 130397 130166 - 108 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130167 130397 108 - . gene_id 1 ; sequence CbirOr333CTE ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130167 130397 . - . KQ414817.1 exonerate:protein2genome:local exon 130167 130397 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 130167 130397 108 - . alignment_id 1 ; Query CbirOr333CTE ; Align 130398 137 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr318 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 120 -> 215 Target range: 130442 -> 130163 121 : AspPheIleThrIleThrIleThrCysPheTyrLeuIleIleLeuPheValThrValV : 140 |||||| !! !||| !!:!: !! |||! |||:!!:!! !|||||| !:!! AspPheSerIleIleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuG 130442 : GATTTTTCCATTATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGC : 130385 141 : alPheLeuTrpProAsnIleLeuAsnIleValMetProLeuAsnGluSerArgArgSe : 159 !.!!||| |||.!.||||||..!|||:!! ||||||!.!|||! !!.!! !!: lnIleLeu---ProGlnIleLeuGlyIleIleSerProLeuThrGluIleAsnThrAs 130384 : AAATTCTC---CCGCAAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAA : 130331 160 : rArgGlnPheProAspAlaMetGluTyrPheIleAspGlnGluLysTyrIleTyrLeu : 178 !!:! !.!! ! !! |||||||||:!!||| ! :!! ! |||||||||||| nLysLeuLeuVal---ArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeu 130330 : CAAATTACTCGTT---CGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTA : 130277 179 : LeuThrPheTyrSerValValIleAlaPheValThrIleSerValValLeuSerIleG : 198 :!!|||.!!:!!:!!..!:!! ! !.!. !!:!:!:!!!:!! !:!!|||! !! IleThrIleHisAlaThrIleAlaIleMetCysSerValThrMetGlnIleSerSerA 130276 : ATCACGATCCACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCG : 130217 199 : luAlaPheSerValLeuHisIleHisHisIleCysAlaMetPheGlnIleVal : 215 !: ...::: ::: ::: |||||| !!!.!||||||:!!:!!:!! spIleLeuAsnAsnIlePheMetMetHisIleSerGlyMetPheGluValIle 130216 : ATAttttgaataacatatttatGATGCACATCAGTGGAATGTTCGAGGTAATT : 130164 vulgar: CbirOr318 120 215 . KQ414817.1 130442 130163 - 122 M 22 66 G 1 0 M 20 60 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130164 130442 122 - . gene_id 1 ; sequence CbirOr318 ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130164 130442 . - . KQ414817.1 exonerate:protein2genome:local exon 130164 130442 . - . insertions 0 ; deletions 2 KQ414817.1 exonerate:protein2genome:local similarity 130164 130442 122 - . alignment_id 1 ; Query CbirOr318 ; Align 130443 121 66 ; Align 130377 144 60 ; Align 130317 165 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr321PSE Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 154 Query range: 49 -> 214 Target range: 131604 -> 130166 50 : LeuLeuThrPheValThrPheGluTyrAsnLeuAspLeuLeuLeuGluValLeuSerP : 69 :!!!!!..!!:! !!||| !||| !|||||| !||||||:!!!!:..!:!! !! ValPheValTyrPheThrThrGluIleAsnLeuArgLeuLeuIleAspThrIleProA 131604 : GTTTTCGTGTACTTCACTACCGAGATTAATTTGCGTCTGCTTATTGACACGATCCCGG : 131547 70 : heThrIleProTyrLeuIleValIleLeuLysTyrValAlaPheCysValLysSerGl : 88 ! !!!: !|||:!!||||||.!!||||||||||||.!!.!!!! ||||||!:!|| laLeuMetIleTyrMetIleValPheLeuLysTyrValThrIleTrpValLysAsnGl 131546 : CCTTAATGATCTACATGATAGTGTTCCTGAAATATGTAACAATTTGGGTGAAAAACGA : 131490 89 : uSer >>>> Target Intron 1 >>>> MetLysLysIleMetAspMetIleL : 98 |:!! 943 bp ! ::!:!! ! !:!! | uAla++ --AsnArgGluTyrSerAsnAlaSerL 131489 : GGCGgt.........................taAACCGAGAATATTCGAATGCATCGA : 130517 99 : ysTyrAspTrpAsnThrLeuThrAsnSerMetGluTyrLysIleIleHisArgTyrTh : 117 |||||:!! ! ! !!!! !!!...!!!::!!||| ! !! !.....! ysTyrAsnMetLeuLeuPheArgLysGluIleGlnTyrTyrSerSerArgGluThrPh 130516 : AATATAATATGCTTTTATTTCGTAAGGAAATCCAGTATTATTCCAGTAGGGAGACATT : 130460 118 : rTyrIleGlyAlaThrTyrAlaGlnLeuPheAlaLeuIleAlaTyrIleValProLeu : 136 ! !! ! ! !! ! !! !...:!!.!! !!:!!.!!:!!!:!:!::!!! !||| eAsnProLysMetIleAspPheSerIleIleProValPheSerPheLeuLeuLeuLeu 130459 : TAACCCTAAAATGATCGATTTTTCCATTATTCCAGTGTTCTCATTTTTGCTACTCCTT : 130403 137 : PheIleThrPheGlyHisPheValProAspPheLeuAspIleValGluProLeuAsnG : 156 !.!!..!||| !!!..!!:!!|||.!..!!|||! !|||:!!..!||||||!.!: GlyPheValPheLeuGlnIleLeuProGlnIleLeuGlyIleIleSerProLeuThrG 130402 : GGTTTCGTTTTCTTGCAAATTCTCCCGCAAATTTTAGGCATAATTTCACCTCTAACCG : 130343 157 : lnSerArgSerHisGlnMetIleIleLeuAlaGluTyrPheValAspAsnGluLysTy : 175 !!! !!.!!!!:!!:!!:!::!!:!!! !.!!||||||||||||||| !!:!! ! || luIleAsnThrAsnLysLeuLeuValArgThrGluTyrPheValAspTyrLysAspTy 130342 : AGATCAATACTAACAAATTACTCGTTCGAACCGAATACTTTGTCGACTACAAAGATTA : 130286 176 : rPheTyrPheIleAlaLeuHisValAsnValCysPhePheIlePheGlnIleThrLeu : 194 |.!!|||.!.|||.!!:!!|||!.!!.!:!!....!..!. ! ! !! !! !! ! rIleTyrLeuIleThrIleHisAlaThrIleAlaIleMetCysSerValThrMetGln 130285 : CATTTATCTAATCACGATCCACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAA : 130229 195 : MetSerThrThrSerThrTyrIleSerTyrIleGlnHisValCysGlyMetPheGlnI : 214 !!:|||!:! !! ::::::..!|||:!! !!|||||||||:!!: IleSerSerAspIleLeuAsnAsnIlePheMetMetHisIleSerGlyMetPheGluV 130228 : ATTAGCAGCGATAttttgaataacatatttatGATGCACATCAGTGGAATGTTCGAGG : 130169 215 : le : 214 !! al 130168 : TA : 130167 vulgar: CbirOr321PSE 49 214 . KQ414817.1 131604 130166 - 154 M 40 120 5 0 2 I 0 939 3 0 2 M 125 375 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130167 131604 154 - . gene_id 1 ; sequence CbirOr321PSE ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 131485 131604 . - . KQ414817.1 exonerate:protein2genome:local exon 131485 131604 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 131483 131484 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 130542 131484 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 130542 130543 . - . intron_id 0 ; splice_site "TA" KQ414817.1 exonerate:protein2genome:local cds 130167 130541 . - . KQ414817.1 exonerate:protein2genome:local exon 130167 130541 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 130167 131604 154 - . alignment_id 1 ; Query CbirOr321PSE ; Align 131605 50 120 ; Align 130542 90 375 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 331 -> 392 Target range: 128560 -> 128303 332 : ThrTyrMetSerGlnTrpTyrAsnGlyProLeuHisAlaGlnLysLeuLeuLeuPheI : 351 !:!||| :!!:!!||||||!!.!.!|||::: :::||||||:::|||||||||: SerTyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheL 128560 : AGCTATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCC : 128503 352 : leMetGlnArgSerMetLysSerThrValMetCysLeuGlyAsnLeuPheValProSe : 370 !!|||!!.|||! !|||:!! !! ! !:!: ||| !::!||| !!!.! !!.! euMetHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGl 128502 : TCATGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGG : 128446 371 : rLeuGluGlyPheAlaThr >>>> Target Intron 1 >>>> IleThrSerM : 380 ! !||| !!:!|||||| 74 bp :!:..!..!! yAsnGluLeuTyrAlaThr++ ++MetValGlnT 128445 : TAACGAGTTGTACGCTACCgt.........................agaTGGTGCAGA : 128342 381 : etSerPheSerTyrPheThrValIleHisSerValGln : 392 .!!||||||||||||||||||:!!:!!|||:!!||| hrGlyPheSerTyrPheThrValLeuTyrSerLeuGln 128341 : CTGGTTTCTCCTACTTTACGGTTCTCTACTCGTTGCAA : 128304 vulgar: CbirOr320 331 392 . KQ414817.1 128560 128303 - 118 M 45 135 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128304 128560 118 - . gene_id 1 ; sequence CbirOr320 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128560 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128560 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128304 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128304 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128304 128560 118 - . alignment_id 1 ; Query CbirOr320 ; Align 128561 332 135 ; Align 128352 377 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 137 -> 213 Target range: 130394 -> 130166 138 : ValValIleGlnLeuAlaProAsnPheLeuAspPheValAlaProGlnAsnGluSerA : 157 ||| !!:!:|||:!! !|||.!..!!|||! !.!.:!!:!!|||! !!.!|||! !! ValPheLeuGlnIleLeuProGlnIleLeuGlyIleIleSerProLeuThrGluIleA 130394 : GTTTTCTTGCAAATTCTCCCGCAAATTTTAGGCATAATTTCACCTCTAACCGAGATCA : 130337 158 : rgLeuHisHisIleProIleThrAlaGluTyrPheValAspGlnGlnLysCysTyrLe : 176 .! !:!! ! :!!! !:!! !.!!||||||||||||||| ! :!! ! ! ! !! snThrAsnLysLeuLeuValArgThrGluTyrPheValAspTyrLysAspTyrIleTy 130336 : ATACTAACAAATTACTCGTTCGAACCGAATACTTTGTCGACTACAAAGATTACATTTA : 130280 177 : uProIleLeuLeuHisIleAspValIleAlaValValGlyPheThrThrValMetSer : 195 !! !||| !:!!||| !:!! ! !:!! !.!! ! |||! ! !!!:||| rLeuIleThrIleHisAlaThrIleAlaIleMetCysSerValThrMetGlnIleSer 130279 : TCTAATCACGATCCACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGC : 130223 196 : ThrGluSerLeuPheAlaAlaPheValGlnHisAlaIleGlyMetPheAlaIle : 213 !:!!!:! ||| |||::!..!||| !! !|||||||||! !:!! SerAspIleLeuAsnAsnIlePheMetMetHisIleSerGlyMetPheGluVal 130222 : AGCGATAttttgaataacatatttatGATGCACATCAGTGGAATGTTCGAGGTA : 130167 vulgar: CbirOr320 137 213 . KQ414817.1 130394 130166 - 101 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130167 130394 101 - . gene_id 2 ; sequence CbirOr320 ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130167 130394 . - . KQ414817.1 exonerate:protein2genome:local exon 130167 130394 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 130167 130394 101 - . alignment_id 2 ; Query CbirOr320 ; Align 130395 138 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr322 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 133 -> 211 Target range: 1243845 -> 1243611 134 : ThrLeuAlaPheIleLeuThrMetPheValProAspValLeuAspIleIleThrPr : 152 :!!:!! !|||:!!||| ! !!.:!!||| :!!||||||:!!:!!:!!|| SerIleIlePheValLeuPheProLeuIleProProIleLeuAspValValSerPr 1243845 : TCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACC : 1243791 153 : oLeuAspGluProArgProArgGlnLeuProValGlnIleGluPhePhePheAspG : 171 ||||:!!||| !!||| !!||| ! :::::::::::::::.!.||||||. oLeuAsnGluThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspM 1243790 : GCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACA : 1243734 172 : lnAspArgTyrPheTyrLeuPheSerPheIlePheIleIleValAlaPheLeuGly : 189 ..:::::: |||||| ... !! ! ! ! !:!!|||:!! ! etGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThr 1243733 : tggagaagaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACC : 1243680 190 : MetThrValLeuMetAlaThrGluAsnMetTyrMetLeuPheThrGlnHisAlaCy : 208 |||! !|||:!!!!:.!!! !!!: :!:|||:!!:!!.!!! !!!.|||.!!|| MetMetValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCy 1243679 : ATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTG : 1243623 209 : sGlyLeuPhe : 211 |||||||||| sGlyLeuPhe 1243622 : TGGCTTATTC : 1243612 vulgar: CbirOr322 133 211 . KQ414851.1 1243845 1243611 - 139 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243612 1243845 139 - . gene_id 1 ; sequence CbirOr322 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243612 1243845 . - . KQ414851.1 exonerate:protein2genome:local exon 1243612 1243845 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243612 1243845 139 - . alignment_id 1 ; Query CbirOr322 ; Align 1243846 134 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr318 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 144 Query range: 121 -> 214 Target range: 1243878 -> 1243605 122 : PheIleThrIleThrIleThrCysPheTyrLeuIleIleLeuPheValThrValVa : 140 ...:!!:!!:!!:!! !|||! ||||||!!! |||:!!|||||| ! !! LeuValSerLeuSerGlyThrLeuPheTyrPheSerIleIlePheValLeuPhePr 1243878 : ctcGTCTCTCTTTCAGGTACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCC : 1243824 141 : lPheLeuTrpProAsnIleLeuAsnIleValMetProLeuAsnGluSerArgArgS : 159 !!!.:!! ||| ||||||:!!:!!||| ||||||||||||!!! |||| oLeuIle---ProProIleLeuAspValValSerProLeuAsnGluThr---ArgS 1243823 : ATTAATT---CCGCCAATATTGGATGTTGTTTCACCGCTTAATGAGACT---CGAT : 1243773 160 : erArgGlnPheProAspAlaMetGluTyrPheIleAspGlnGluLysTyrIleTyr : 177 ||||| ! ::::::|||.!..!!|||...|||||| ...||| erArgIleGluValIleLysLeuGlnTyrLeuPheAspMetGluLysAsnPheTyr 1243772 : CTCGGATAGaagtaataaaattgcaataccTGTTCGACAtggagaagaatttttat : 1243719 178 : LeuLeuThrPheTyrSerValValIleAlaPheValThrIleSerValValLeuSe : 196 ||| !!|||!!!! ! ! !:!!|||:!!|||!!:! !|||:!!:!!!! SerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMetValIleIleTh 1243718 : tcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCAC : 1243662 197 : rIleGluAlaPheSerValLeuHisIleHisHisIleCysAlaMetPheGlnIle : 214 !|||!!:|||!!.! !|||:!! !|||||||||! |||!.!:!:||| :!! rIleAspAlaLeuTyrValValIleIleHisHisThrCysGlyLeuPheAlaVal 1243661 : TATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCTGTT : 1243606 vulgar: CbirOr318 121 214 . KQ414851.1 1243878 1243605 - 144 M 21 63 G 1 0 M 13 39 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243878 144 - . gene_id 1 ; sequence CbirOr318 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243878 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243878 . - . insertions 0 ; deletions 2 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243878 144 - . alignment_id 1 ; Query CbirOr318 ; Align 1243879 122 63 ; Align 1243816 144 39 ; Align 1243777 158 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr318 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 127 -> 214 Target range: 1234323 -> 1234065 128 : ThrCysPheTyrLeuIleIleLeuPheValThrValValPheLeuTrpProAsnIl : 146 |||! .!.! !!!!!!::!!:!!|||:!! !||| !!!.:!!!::||| .! ThrLeuLeuSerPheMetValValPheLeuLeuValProLeuValPhePro---Ph 1234323 : ACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCA---TT : 1234272 147 : eLeuAsnIleValMetProLeuAsnGluSerArgArgSerArgGlnPheProAspA : 165 !|||:!!:!!|||:!:||||||||||||!!!|||! ! !!!:!||| ! ! eLeuAspValValLeuProLeuAsnGluThrArgProArgGlnGlnGlyPheArgV 1234271 : CTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAG : 1234215 166 : laMetGluTyrPheIleAspGlnGluLysTyrIleTyrLeuLeuThrPheTyrSer : 183 .!! ! !:!.!!|||:!!! ! ! |||.!!!:! !:!! !||| ! ! ! alAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyrPheGlnLeu 1234214 : TTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTG : 1234161 184 : ValValIleAlaPheValThrIleSerValValLeuSerIleGluAlaPheSerVa : 202 !.! ! !||| !!|||..!:!!! !:!!:!!:!!!!!:!!!!::!!!!.! !:! AlaTrpGlyAlaValValValValMetIleIleIleThrValAspSerLeuTyrMe 1234160 : GCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTCGTTGTACAT : 1234104 203 : lLeuHisIleHisHisIleCysAlaMetPheGlnIle : 214 !:!! ||||||||| ! !!!.!|||||| :!: tIleIleIleHisHisAlaSerGlyMetPheAlaVal 1234103 : GATAATAATTCACCATGCCAGCGGAATGTTCGCCGTG : 1234066 vulgar: CbirOr318 127 214 . KQ414851.1 1234323 1234065 - 102 M 17 51 G 1 0 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234066 1234323 102 - . gene_id 2 ; sequence CbirOr318 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234066 1234323 . - . KQ414851.1 exonerate:protein2genome:local exon 1234066 1234323 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1234066 1234323 102 - . alignment_id 2 ; Query CbirOr318 ; Align 1234324 128 51 ; Align 1234273 146 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 121 -> 220 Target range: 1240106 -> 1239806 122 : TyrThrMetLeuPheThrLeuAlaValTyrSerGlyLeuSerValCysValValIl : 140 |||! ! ! !.!!:!!:!!!.!:!!!:!||| ||| ::: :::|||:! TyrIleTyrTyrIleSerValValLeuPheSerValLeuPheIlePheLeuValVa 1240106 : TACATATATTACATTTCAGTCGTTTTATTTTCcgttttgttcatttttctggTGGT : 1240052 141 : eGlnLeuAlaProAsnPheLeuAspPheValAlaProGlnAsnGluSerArgLeuH : 159 !! ::: ||| ...||||||.!!:!! !||| !||||||!!!||| !! lProIlePheProProLeuLeuAspIleLeuLysProLeuAsnGluThrArgAlaA 1240051 : TCcgatttttcctcctcttctggACATTTTAAAACCTTTAAACGAAACCCGAGCAC : 1239995 160 : isHisIleProIleThrAlaGluTyr<->PheValAspGlnGlnLysCysTyrLeu : 176 ..... ... ......||| .!!:!!|||::!.!.:!! !||| rgGlnLysIlePheLysValAsnTyrLeuIleIleAspArgAspGluGlnAlaLeu 1239994 : gccagaaaatattcaaagttaaTTACCTGATCATTGACAGGGATGAACAAGCTCTG : 1239941 177 : ProIleLeuLeuHisIleAspValIleAlaValValGlyPheThrThrValMetSe : 195 !! !! !!!!|||:!:..! !! !.!!:!!..! ! ! !:!!|||:!:|| IleThrTyrPheHisLeuSerTrpThrThrIleThrLeuGlyIleSerValLeuSe 1239940 : ATCACATATTTTCACTTGTCTTGGACAACTATCACTCTTGGGATATCTGTGCTTAG : 1239884 196 : rThrGluSerLeuPheAlaAlaPheValGlnHisAlaIleGlyMetPheAlaIleA : 214 |:!!|||! !:!!!:!!.! !.!!:!!!!.|||.!!! !|||:!!||||||:!:| rSerGluLeuIleTyrValLeuLeuIleHisHisThrSerGlyLeuPheAlaValA 1239883 : CTCAGAATTGATATACGTCCTTCTTATTCATCATACCAGCGGTCTGTTTGCTGTGG : 1239827 215 : laSerTyrArgIleGluHis : 220 ||... ...:::||| laGly***IlePheLysHis 1239826 : CTGggtaaatattcaaacat : 1239807 vulgar: CbirOr320 121 220 . KQ414851.1 1240106 1239806 - 100 M 46 138 G 0 3 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239807 1240106 100 - . gene_id 1 ; sequence CbirOr320 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239807 1240106 . - . KQ414851.1 exonerate:protein2genome:local exon 1239807 1240106 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239807 1240106 100 - . alignment_id 1 ; Query CbirOr320 ; Align 1240107 122 138 ; Align 1239966 168 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr326 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 143 -> 213 Target range: 1243815 -> 1243605 144 : ProGlyIlePheAspValIleLeuSerIleAsnLysSerArgSerHisHisLeuTy : 162 ||| !|||!!.||||||:!!! ! !!:!!|||:!!!!!||||||!.. ProProIleLeuAspValValSerProLeuAsnGluThrArgSerArgIleGluVa 1243815 : CCGCCAATATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagt : 1243761 163 : rLeuLysMetGluTyrPheLeuAspGlnGluLysTyrLeuTyrPheIleLeuLeuH : 181 :::|||::::::|||.!.!!!|||...|||||| ...||| ::: :!!: lIleLysLeuGlnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrValT 1243760 : aataaaattgcaataccTGTTCGACAtggagaagaatttttattcattatacGTCT : 1243704 182 : isIleSerLeuAlaIleSerIleAlaValAlaValLeuIleAlaIleGlyThrMet : 199 !!! !.!!! !..! ! !!!:.!!:!! !|||:!!|||.!!|||! !.!!:!: yrThrGlyTrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeu 1243703 : ACACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTA : 1243650 200 : PheIleAlaTyrLeuGlnHisThrCysGlyMetPheArgIle : 213 !:!:!:!.! !:!!!!.||||||||||||:!:||| !:!! TyrValValIleIleHisHisThrCysGlyLeuPheAlaVal 1243649 : TATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCTGTT : 1243606 vulgar: CbirOr326 143 213 . KQ414851.1 1243815 1243605 - 126 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243815 126 - . gene_id 1 ; sequence CbirOr326 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243815 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243815 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243815 126 - . alignment_id 1 ; Query CbirOr326 ; Align 1243816 144 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr323PC Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 107 -> 213 Target range: 1225814 -> 1224030 108 : GluLeuGluIleIleGlnLysTyrAlaSerLysGlyLysPheTyrThrIleTyrSe : 126 |||:!!||||||:!::!!||||||.!!|||||||||! ! !! ! ! ! GluIleGluIleLeuLysLysTyrThrSerLysGlyMetArgLeuArgGluLeuTy 1225814 : GAAATAGAGATACTGAAGAAATACACCAGTAAAGGGATGAGACTTAGAGAACTGTA : 1225760 127 : rAla{L} >>>> Target Intron 1 >>>> {eu}PheMetTyrIleThrT : 134 ! !{ } 1463 bp { !} :!!!::|||..! rLys{A}++ ++{sp}SerLeuTrpIleValL 1225759 : CAAA{G}gt.........................ag{ac}tCGTTGTGGATAGTTC : 1224273 135 : hrSerMetPheIlePheSerLeuCysIleProAspIleLeuAsnPheValAlaPro : 152 !! !:!:!:!!!: !! !! !! ||| ! :!!|||:!! !!||||||||| euLeuValTyrMetSerPheProLeuIleAsnProValLeuAspValValAlaPro 1224272 : TGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCG : 1224219 153 : LeuGluGluProArgLeuArgGluLeuProThrProValAsp<->CysPheLeuAs : 170 |||.!.||| !!|||! !|||..!||| ! !||||||..! |||:!!|| LeuAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleAs 1224218 : TTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGA : 1224162 171 : pGlnGlnGlnPhePheTyrPheIleValSerAspPheAlaLeuIleAlaLeuIleG : 189 |:!! ! :!! !|||||| !:!: !! ! !!.!. ! !! !!.!:!! ! pGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSerC 1224161 : CGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCT : 1224105 190 : lyMetThrThrPheIleAlaThrGluThrMetPheMetMetPheIleLeuHisAla : 207 !! !! !! !.!.||||||..!!!:! !:!:!:!!!:! .!!|||!!!||| ! ysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLeu 1224104 : GCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCTT : 1224051 208 : CysGlyLeuPheAlaIle : 213 |||||||||||||||:!: CysGlyLeuPheAlaVal 1224050 : TGCGGATTGTTCGCAGTG : 1224031 vulgar: CbirOr323PC 107 213 . KQ414851.1 1225814 1224030 - 121 M 20 60 S 0 1 5 0 2 I 0 1459 3 0 2 S 1 2 M 38 114 G 0 3 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1225814 121 - . gene_id 1 ; sequence CbirOr323PC ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1225754 1225814 . - . KQ414851.1 exonerate:protein2genome:local exon 1225754 1225814 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1225752 1225753 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1224291 1225753 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1224291 1224292 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1224031 1224290 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224290 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1225814 121 - . alignment_id 1 ; Query CbirOr323PC ; Align 1225815 108 60 ; Align 1224289 129 114 ; Align 1224172 167 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr323PC Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 129 -> 213 Target range: 1243857 -> 1243605 130 : MetTyrIleThrThrSerMetPheIlePheSerLeuCysIleProAspIleLeuAs : 148 :!!!:! ! !:!!! !!!:|||:!!!!.! !! !! |||||| ||||||:! LeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleLeuAs 1243857 : TTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGA : 1243803 149 : nPheValAlaProLeuGluGluProArgLeuArgGluLeuProThrProValAspC : 167 ! !!|||:!!||||||.!.||| !!|||! !||| ! :::... pValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuGlnT 1243802 : TGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgcaat : 1243746 168 : ysPheLeuAspGlnGlnGlnPhePheTyrPheIleValSerAspPheAlaLeuIle : 185 .!.!!!|||...:::::: |||||| ::: ! !! !!.!! ! ! yrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCys 1243745 : accTGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGCTGGTGC : 1243692 186 : AlaLeuIleGlyMetThrThrPheIleAlaThrGluThrMetPheMetMetPheIl : 204 :!!!!!!!: !|||! !..!.!.|||.!!! !!!:.!!:!:!:!:!!:!:.!!|| SerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValValIleIl 1243691 : TCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCAT : 1243635 205 : eLeuHisAlaCysGlyLeuPheAlaIle : 213 |! !|||.!!|||||||||||||||:!! eHisHisThrCysGlyLeuPheAlaVal 1243634 : TCATCACACGTGTGGCTTATTCGCTGTT : 1243606 vulgar: CbirOr323PC 129 213 . KQ414851.1 1243857 1243605 - 105 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243857 105 - . gene_id 2 ; sequence CbirOr323PC ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243857 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243857 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243857 105 - . alignment_id 2 ; Query CbirOr323PC ; Align 1243858 130 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr314 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 177 Query range: 88 -> 213 Target range: 1225871 -> 1224030 89 : IleArgLysLeuIleGluValIleLysHisAspLeuAsnThrIleLysArgLysGl : 107 ...|||||||||...::::!!!!: !!.. ! !!!. !:!::!! !|||!! PheArgLysLeuPheAspLeuMetValArgArgTrpLysLeuLeuGluAlaLysAs 1225871 : tttcgaaaattattcgatcTCATGGTACGAAGATGGAAACTGTTGGAAGCAAAGGA : 1225817 108 : uGluIleGluIleLeuLysGluTyrAlaAsnIleGlyTyrIleLeuThrMetSerI : 126 :||||||||||||||||||:!!|||.!!!:!! !||| ! !|||! ! ! pGluIleGluIleLeuLysLysTyrThrSerLysGlyMetArgLeuArgGluLeuT 1225816 : CGAAATAGAGATACTGAAGAAATACACCAGTAAAGGGATGAGACTTAGAGAACTGT : 1225760 127 : leLeu{I} >>>> Target Intron 1 >>>> {le}LeuPheTyrIleAla : 133 ! !{ } 1463 bp { !} !!!.!::|||!.! yrLys{A}++ ++{sp}SerLeuTrpIleVal 1225759 : ACAAA{G}gt.........................ag{ac}tCGTTGTGGATAGTT : 1224276 134 : IlePheGlyPheIleMetMetGluValLeuProLysIleLeuAspIleValValPr : 152 :!:!!.! !!:!!!:! .!. !:!!:!! ! !:!!||||||:!!|||!.!|| LeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAspValValAlaPr 1224275 : CTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCC : 1224219 153 : oLeuAsnGluSerArgProValHis<->LeuLeuGlyValAlaThrLeuPhePheA : 170 ||||||||||!!!|||||| !... |||||| !|||::! !:!!|||.!.| oLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleA 1224218 : GTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAG : 1224162 171 : spGluGluLysTyrPhePheProIleLeuGlyHisMetThrValAlaLeuLeuSer : 188 ||||| ! :!!:!!|||!:! !:!: ! !|||:!: !..!::!:!!:!!||| spGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSer 1224161 : ACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCC : 1224108 189 : GluThrThrThrIleIleAlaThrGluThrValGlyLeuIleLeuIleGlnHisLe : 207 !! !! !|||||||||..!!!:! !:!! !:!!! !:!!||| ||||| CysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLe 1224107 : TGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCT : 1224051 208 : uCysGlyLeuPheLysIle : 213 ||||||||||||| !:!: uCysGlyLeuPheAlaVal 1224050 : TTGCGGATTGTTCGCAGTG : 1224031 vulgar: CbirOr314 88 213 . KQ414851.1 1225871 1224030 - 177 M 39 117 S 0 1 5 0 2 I 0 1459 3 0 2 S 1 2 M 32 96 G 0 3 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1225871 177 - . gene_id 1 ; sequence CbirOr314 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1225754 1225871 . - . KQ414851.1 exonerate:protein2genome:local exon 1225754 1225871 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1225752 1225753 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1224291 1225753 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1224291 1224292 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1224031 1224290 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224290 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1225871 177 - . alignment_id 1 ; Query CbirOr314 ; Align 1225872 89 117 ; Align 1224289 129 96 ; Align 1224190 161 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr314 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 128 -> 213 Target range: 1243857 -> 1243605 129 : LeuPheTyrIleAlaIlePheGlyPheIleMetMetGluValLeuProLysIleLe : 147 |||||||||.!!:!!|||.!. |||:!!:!:.!. !:!!:!!||| !||||| LeuPheTyrPheSerIleIle---PheValLeuPheProLeuIleProProIleLe 1243857 : TTGTTCTATTTCTCGATAATA---TTCGTATTATTTCCATTAATTCCGCCAATATT : 1243806 148 : uAspIleValValProLeuAsnGluSerArgProValHisLeuLeuGlyValAlaT : 166 ||||:!!||| !||||||||||||!!!||| !! ! ::: uAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuG 1243805 : GGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgc : 1243749 167 : hrLeuPhePheAspGluGluLysTyrPhePheProIleLeuGlyHisMetThrVal : 184 .!.|||||| |||||| |||::: ::: ! !:!!! ! ! lnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrp 1243748 : aataccTGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGCTGG : 1243695 185 : AlaLeuLeuSerGluThrThrThrIleIleAlaThrGluThrValGlyLeuIleLe : 203 ..!! !!!!! ! ! !! !..!||||||.!!! !!!:.!!:!! !:!!:!!:! CysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValValIl 1243694 : TGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAAT : 1243638 204 : uIleGlnHisLeuCysGlyLeuPheLysIle : 213 !|||!!.||| !|||||||||||| :!! eIleHisHisThrCysGlyLeuPheAlaVal 1243637 : CATTCATCACACGTGTGGCTTATTCGCTGTT : 1243606 vulgar: CbirOr314 128 213 . KQ414851.1 1243857 1243605 - 117 M 7 21 G 1 0 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243857 117 - . gene_id 2 ; sequence CbirOr314 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243857 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243857 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243857 117 - . alignment_id 2 ; Query CbirOr314 ; Align 1243858 129 21 ; Align 1243837 137 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr314 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 136 -> 213 Target range: 1234299 -> 1234065 137 : PheIleMetMetGluValLeuProLysIleLeuAspIleValValProLeuAsnGl : 155 |||:!::!!:!: !:!!:!! ! !.!!||||||:!!|||:!!||||||||||| PheLeuLeuValProLeuValPheProPheLeuAspValValLeuProLeuAsnGl 1234299 : TTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGTCGTCCTTCCGTTAAATGA : 1234245 156 : uSerArgProValHisLeu<->LeuGlyValAlaThrLeuPhePheAspGluGluL : 173 |!!!|||||| !!!.! ! !!! !!||| ! !|||!:!|||||||||! ! uThrArgProArgGlnGlnGlyPheArgValAsnTyrLeuTyrPheAspGluAlaA 1234244 : AACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTATATTTCGACGAAGCGG : 1234188 174 : ysTyrPhePheProIleLeuGlyHisMetThrValAlaLeuLeuSerGluThrThr : 191 ! ||||||||| !:!:! ! !!!.:!!.!! !!.! !:!! !! ..!! ! spTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaValValValValMet 1234187 : ACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATG : 1234134 192 : ThrIleIleAlaThrGluThrValGlyLeuIleLeuIleGlnHisLeuCysGlyLe : 210 ! !||||||.!!..!!!::!!:!! !:!!|||:!!|||!!.||| ! !!|||:! IleIleIleThrValAspSerLeuTyrMetIleIleIleHisHisAlaSerGlyMe 1234133 : ATCATAATCACCGTAGACTCGTTGTACATGATAATAATTCACCATGCCAGCGGAAT : 1234077 211 : uPheLysIle : 213 !||| :!: tPheAlaVal 1234076 : GTTCGCCGTG : 1234066 vulgar: CbirOr314 136 213 . KQ414851.1 1234299 1234065 - 110 M 25 75 G 0 3 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234066 1234299 110 - . gene_id 3 ; sequence CbirOr314 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234066 1234299 . - . KQ414851.1 exonerate:protein2genome:local exon 1234066 1234299 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234066 1234299 110 - . alignment_id 3 ; Query CbirOr314 ; Align 1234300 137 75 ; Align 1234222 162 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr314 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 125 -> 220 Target range: 1240094 -> 1239806 126 : IleLeuIleLeuPheTyrIleAlaIlePheGlyPheIleMetMetGluValLeuPr : 144 |||! !:!!:!!!!.!:! ...:::||| |||::::!!:!: :::...|| IleSerValValLeuPheSerValLeuPheIlePheLeuValValProIlePhePr 1240094 : ATTTCAGTCGTTTTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcc : 1240040 145 : oLysIleLeuAspIleValValProLeuAsnGluSerArgPro<->ValHisLeuL : 162 | :::|||||||||:!! !||||||||||||!!!||| !! :::. oProLeuLeuAspIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIleP 1240039 : tcctcttctggACATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatat : 1239983 163 : euGlyValAlaThrLeuPhePheAspGluGluLysTyrPhePheProIleLeuGly : 180 .. ||| ! !|||.!!.!!|||..!!!::!! ! !.!. !! !! ! ! heLysValAsnTyrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPhe 1239982 : tcaaagttaaTTACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTT : 1239929 181 : HisMetThrValAlaLeuLeuSerGluThrThrThrIleIleAlaThrGluThrVa : 199 |||:!!:!! !.!! !:!!!!! !! !:!!:!::!!::!:!!||| !:! HisLeuSerTrpThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIl 1239928 : CACTTGTCTTGGACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGAT : 1239872 200 : lGlyLeuIleLeuIleGlnHisLeuCysGlyLeuPheLysIleAlaSerPheArgI : 218 ! !:!!:!!||||||!!.||| ! !!||||||||| :!:|||... . eTyrValLeuLeuIleHisHisThrSerGlyLeuPheAlaValAlaGly***IleP 1239871 : ATACGTCCTTCTTATTCATCATACCAGCGGTCTGTTTGCTGTGGCTGggtaaatat : 1239815 219 : leGlnHis : 220 ..:::||| heLysHis 1239814 : tcaaacat : 1239807 vulgar: CbirOr314 125 220 . KQ414851.1 1240094 1239806 - 109 M 33 99 G 0 3 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239807 1240094 109 - . gene_id 4 ; sequence CbirOr314 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239807 1240094 . - . KQ414851.1 exonerate:protein2genome:local exon 1239807 1240094 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239807 1240094 109 - . alignment_id 4 ; Query CbirOr314 ; Align 1240095 126 99 ; Align 1239993 159 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr314 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 131 -> 213 Target range: 1229479 -> 1229230 132 : IleAlaIlePheGlyPheIleMetMetGluValLeuProLysIleLeuAspIleVa : 150 .!!|||!!:! !! !|||:!::!!:!: !:!!!!! ! ! !||||||||||| PheAlaMetCysValPheLeuLeuValProLeuPheGlyProAlaLeuAspIleVa 1229479 : TTCGCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCGT : 1229425 151 : lValProLeuAsnGluSerArgPro<->ValHisLeuLeuGlyValAlaThrLeuP : 168 |:!!|||! !||||||!!!|||||| !!!.|||!!! !!||| ! !:!!. lLeuProSerAsnGluThrArgProArgGlnGlnLeuPheArgValAsnTyrIleI 1229424 : CCTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAA : 1229368 169 : hePheAspGluGluLysTyrPhePheProIleLeuGlyHisMetThrValAlaLeu : 186 !!||||||:!!! ! ! ||||||||| !:!:! ! !!!.:!! ! !..! ! lePheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPheTrpCysThr 1229367 : TTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACA : 1229314 187 : LeuSerGluThrThrThrIleIleAlaThrGluThrValGlyLeuIleLeuIleGl : 205 :!! ! ..!! !.!!||||||.!!..!!!::!!:!! !:!!|||:!!||| ! IleValLeuValMetAlaIleIleThrValAspSerLeuTyrMetIleIleIleTy 1229313 : ATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGATCATAATTTA : 1229257 206 : nHisLeuCysGlyLeuPheLysIle : 213 ||| ! !!|||:!!||| ||| rHisAlaSerGlyMetPheAlaIle 1229256 : CCATGCCAGCGGAATGTTCGCTATA : 1229231 vulgar: CbirOr314 131 213 . KQ414851.1 1229479 1229230 - 100 M 27 81 G 0 3 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229231 1229479 100 - . gene_id 5 ; sequence CbirOr314 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229231 1229479 . - . KQ414851.1 exonerate:protein2genome:local exon 1229231 1229479 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229231 1229479 100 - . alignment_id 5 ; Query CbirOr314 ; Align 1229480 132 81 ; Align 1229396 159 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 137 -> 218 Target range: 1656 -> 1899 138 : ValValIleGlnLeuAlaProAsnPheLeuAspPheValAlaProGlnAsnGluSerArgLe : 158 ||| !! ! !:!!.!!|||:!!.!!||||||.!!:!! !|||:!!|||||||||||| ValSerThrProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAs 1657 : GTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAAAACGAGTCACGAGA : 1717 159 : uHisHisIleProIleThrAlaGluTyrPheValAspGlnGlnLysCysTyrLeuProIleL : 179 ! ! ! ! !!||| ! ||||||..!|||:!!!!.|||! ! !!:!! !|||: pValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleI 1718 : CGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAA : 1780 180 : euLeuHisIleAspValIleAlaValValGlyPheThrThrValMetSerThrGluSerLeu : 199 !! !|||!!:! !:!: !:!!|||! !||| !..! !.!.:!! !!!:!!! ! leThrHisMetAlaSerValIleLeuValValPheTyrValTyrPheAlaCysAspThrSer 1781 : TTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGT : 1840 200 : PheAlaAlaPheValGlnHisAlaIleGlyMetPheAlaIleAlaSerTyrArgIle : 218 !:! ! ! !!|||||||||!.! !|||:!!!!.|||:!::!!.!. :::||| TyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly***LysIle 1841 : TACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaatt : 1899 vulgar: CbirOr320 137 218 . KQ414921.1 1656 1899 + 104 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1657 1899 104 + . gene_id 1 ; sequence CbirOr320 ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1657 1899 . + . KQ414921.1 exonerate:protein2genome:local exon 1657 1899 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1657 1899 104 + . alignment_id 1 ; Query CbirOr320 ; Align 1657 138 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 192 Query range: 119 -> 213 Target range: 32461 -> 32743 120 : ArgPheTyrThrMetLeuPheThrLeuAlaValTyrSerGlyLeuSerValCysValVal : 139 ||||||::: ::::!! !||| ! !||||||! !|||:!!! ! !! !!.!:!! ArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIle 32462 : cgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATA : 32519 140 : IleGlnLeuAlaProAsnPheLeuAspPheValAlaProGlnAsnGluSerArgLeuHis : 159 :!:|||!!! !||| !!.!!:!!||| ! :!!||||||! !||||||||||||! !||| ValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHis 32520 : GTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCAT : 32579 160 : HisIleProIleThrAlaGluTyrPheValAspGlnGlnLysCysTyrLeuProIleLeu : 179 :!:||| !.!!!.!|||||||||||||||||||||||| :::||||||||| ! ValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAla 32580 : GTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCG : 32639 180 : LeuHisIleAspValIleAlaValValGlyPheThrThrValMetSerThrGluSerLeu : 199 ||||||!!: !! !! !!.!..!:!!|||.!.|||..!!.!! !:!!...:::|||::: LeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIle 32640 : TTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaatt : 32699 200 : PheAlaAlaPheValGlnHisAlaIleGlyMetPheAlaIle : 213 ||| |||::! |||!.! !!.!! ||| !||| PheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32700 : ttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr320 119 213 . KQ415081.1 32461 32743 + 192 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32462 32743 192 + . gene_id 1 ; sequence CbirOr320 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32462 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32462 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32462 32743 192 + . alignment_id 1 ; Query CbirOr320 ; Align 32462 120 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 0 -> 89 Target range: 10182 -> 10777 1 : MetAspPheAlaGlyLysArgTyrTyrAsnIleHisArgIleLeuLeuSerSerIleGly : 20 ||||||||| !! !:!!!!! ... ::: ||||||! ! !|||||| MetAspPheLeuGluGlnSerCysIleLysLysTyrTyrProLeuLeuPheHisIleGly 10183 : ATGGACTTCCTCGAGCAGAGTtgtattaagaaatattaccCGCTTTTGTTTCATATCGGC : 10240 21 : LeuTrpProTyrGlnAspProArgLysLysThrIleGlnArgIleIleSerSerValIle : 40 :!!||||||!:!.!. !! !!!:!!:!||||||:!:||||||||| !! !!!!:!! ! ValTrpProPheAspTyrSerLysArgLysThrValGlnArgIleCysPheCysLeuTyr 10241 : GTGTGGCCTTTCGATTATTCGAAAAGAAAGACGGTGCAAAGAATCTGTTTTTGCTTGTAT : 10300 41 : LeuIleSerSerValIleValGln >>>> Target Intron 1 >>>> LeuMetL : 51 ! !||||||! !:!!! !|||||| 328 bp :!! GlnIleSerPheIleSerValGln++ ++ValSerV 10301 : CAAATATCCTTTATTAGCGTTCAGgt.........................agGTTTCCG : 10661 52 : ysPheLeuThrThrGluTyrSerLeuAspLeuLeuLeuLysValLeuSerPheThrIleP : 71 !|||!!!||||||||| !|||:!!|||||||||:!! ! ..!:!! !! !|||:!! alPhePheThrThrGluIleSerIleAspLeuLeuIleAspThrMetProAlaThrLeuM 10662 : TGTTCTTCACTACCGAGATTAGTATCGATCTGCTTATCGACACGATGCCAGCCACGTTAA : 10721 72 : roCysIleValPheValLeuLysTyrIleSerPheSerIleGlyThrGluThrVal : 89 !|||!!::!! !!|||||||||||| !!!!|||!!!:!: !!.!!!: !||| etCysMetLeuValValLeuLysTyrAlaThrPheTrpValLysAsnAspGlyVal 10722 : TGTGCATGTTAGTCGTACTGAAGTATGCAACATTTTGGGTGAAAAACGATGGGGTA : 10777 vulgar: CbirOr320 0 89 . KQ415081.1 10182 10777 + 147 M 48 144 5 0 2 I 0 324 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 10183 10777 147 + . gene_id 2 ; sequence CbirOr320 ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 10183 10326 . + . KQ415081.1 exonerate:protein2genome:local exon 10183 10326 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 10327 10328 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 10327 10654 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 10653 10654 . + . intron_id 0 ; splice_site "AG" KQ415081.1 exonerate:protein2genome:local cds 10655 10777 . + . KQ415081.1 exonerate:protein2genome:local exon 10655 10777 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 10183 10777 147 + . alignment_id 2 ; Query CbirOr320 ; Align 10183 1 144 ; Align 10655 49 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 149 -> 211 Target range: 11310 -> 11496 150 : ValAlaProGlnAsnGluSerArgLeuHisHisIleProIleThrAlaGluTyrPheVal : 169 :!!.!! !!!:!||||||!!!||| !:!! !:!: !:!! !.!!|||||||||||| IleThrSerArgAsnGluThrArgAlaAsnGlyLeuIleValLeuThrGluTyrPheVal 11311 : ATCACATCTCGAAACGAGACCAGAGCTAATGGCTTGATAGTTTTAACCGAATACTTCGTT : 11368 170 : AspGlnGlnLysCysTyrLeuProIleLeuLeuHisIleAspValIleAlaValValGly : 189 ||| ! :!!:!!! ! !! !|||||| ! !|||:!:! !||| ! ! !!:!!||| AspTyrGluGlnTyrIleTyrProIleThrThrHisValValValGlyIlePheMetGly 11369 : GATTACGAGCAATACATTTATCCAATTACGACCCACGTGGTTGTAGGAATTTTTATGGGT : 11428 190 : PheThrThrValMetSerThrGluSerLeuPheAlaAlaPheValGlnHisAlaIleGly : 209 |||.!!! ! !!!:.!!!:!!!: !||| ! ! !|||:!!..!|||!.!! !||| PheAlaIleGlnIleGlySerAspLeuLeuAsnMetIlePheMetMetHisValSerGly 11429 : TTTGCTATTCAAATTGGCAGCGATCTTTTGAATATGATATTTATGATGCACGTCAGTGGA : 11488 210 : MetPhe : 211 |||||| MetPhe 11489 : ATGTTC : 11496 vulgar: CbirOr320 149 211 . KQ415081.1 11310 11496 + 101 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 11311 11496 101 + . gene_id 3 ; sequence CbirOr320 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 11311 11496 . + . KQ415081.1 exonerate:protein2genome:local exon 11311 11496 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 11311 11496 101 + . alignment_id 3 ; Query CbirOr320 ; Align 11311 150 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr333CTE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 132 -> 213 Target range: 32500 -> 32743 133 : SerIlePheIlePheIleIleAlaGlnThrTrpIleAspIlePheAspValValLeuGln : 152 .!!|||||| !!:! !|||!.!||| ! ! !!|||.!!||||||:!! !! GlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaPro 32501 : GGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCT : 32558 153 : IleAsnLysSerArgSerGlnSerLeuLeuIleMetThrGluTyrPheValAspGlnGlu : 172 :!!|||:!!|||||| !!!. !|||! ! ! !||||||||||||||||||::: LeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGln 32559 : CTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaa : 32618 173 : LysTyrTyrTyrPheMetLeuLeuHisLeuAsnIleThrValSerIleAlaValPheIle : 192 ||||||::: !!: !||||||:!! ! ||||||!!!:!!!.!:!! :!! LysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrVal 32619 : aaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTC : 32678 193 : PheValAlaIleGlyThrMetPheIleThrPhePheGlnTyrIleTyrGlyLeuPheLys : 212 !..!|||::: ::::::|||||| |||... :!!:!!! !!.! !|||!!. AlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsn 32679 : GCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAAT : 32738 213 : Ile : 213 ||| Ile 32739 : ATT : 32743 vulgar: CbirOr333CTE 132 213 . KQ415081.1 32500 32743 + 130 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32501 32743 130 + . gene_id 1 ; sequence CbirOr333CTE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32501 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32501 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32501 32743 130 + . alignment_id 1 ; Query CbirOr333CTE ; Align 32501 133 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr333CTE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 133 -> 211 Target range: 11262 -> 11496 134 : IlePheIlePheIleIleAlaGlnThrTrpIleAspIlePheAspValValLeuGlnIle : 153 :!:||| !.!!:!!.!! !!!.||| .!.! ! !:!!..!:!! !... ! LeuPheSerIleValPheLeuHisThrLeuSerGlnThrThrAsnThrIleThrSerArg 11263 : TTGTTCTCTATCGTCTTCTTGCATACGCTTTCGCAAACTACCAATACGATCACATCTCGA : 11320 154 : AsnLysSerArgSerGlnSerLeuLeuIleMetThrGluTyrPheValAspGlnGluLys : 173 |||:!!!!!|||:!!.!..!!|||:!!:!!:!:|||||||||||||||||| ! |||:!! AsnGluThrArgAlaAsnGlyLeuIleValLeuThrGluTyrPheValAspTyrGluGln 11321 : AACGAGACCAGAGCTAATGGCTTGATAGTTTTAACCGAATACTTCGTTGATTACGAGCAA : 11380 174 : TyrTyrTyrPheMetLeuLeuHisLeuAsnIleThrValSerIleAlaValPheIlePhe : 193 ||| !||| !!: ! !|||:!! !:!! !:!!! !!!:!.! !! !||| TyrIleTyrProIleThrThrHisValValValGlyIlePheMetGlyPheAlaIleGln 11381 : TACATTTATCCAATTACGACCCACGTGGTTGTAGGAATTTTTATGGGTTTTGCTATTCAA : 11440 194 : ValAlaIleGlyThrMetPheIleThrPhePheGlnTyrIleTyrGlyLeuPhe : 211 :!!!.!! !! ! !:!! !!!:! !|||.!...!:!!:!! !|||:!!||| IleGlySerAspLeuLeuAsnMetIlePheMetMetHisValSerGlyMetPhe 11441 : ATTGGCAGCGATCTTTTGAATATGATATTTATGATGCACGTCAGTGGAATGTTC : 11496 vulgar: CbirOr333CTE 133 211 . KQ415081.1 11262 11496 + 105 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 11263 11496 105 + . gene_id 2 ; sequence CbirOr333CTE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 11263 11496 . + . KQ415081.1 exonerate:protein2genome:local exon 11263 11496 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 11263 11496 105 + . alignment_id 2 ; Query CbirOr333CTE ; Align 11263 134 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr321PSE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 141 -> 214 Target range: 32524 -> 32743 142 : HisPheValProAspPheLeuAspIleValGluProLeuAsnGlnSerArgSerHisGln : 161 !!.|||:!!||| !!.!!:!!|||:!::!!! !|||||||||:!!|||||| !||| ! GlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHisVal 32525 : CAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTA : 32582 162 : MetIleIleLeuAlaGluTyrPheValAspAsnGluLysTyrPheTyrPheIleAlaLeu : 181 :!! ! !!.!|||||||||||||||...:::||||||||| ||||||||| LeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeu 32583 : CTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTG : 32642 182 : HisValAsnValCysPhePheIlePheGlnIleThrLeuMetSerThrThrSerThrTyr : 201 |||:!! !! ! ! !! !:!! !! !! ..! !! !:!!... ||| ::: HisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePhe 32643 : CACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttc : 32702 202 : IleSerTyrIleGlnHisValCysGlyMetPheGlnIle : 214 ||| :::::: |||||||||!.!! |||.!.||| IlePhePheMetPheHisValCysAlaLysPheAsnIle 32703 : atattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr321PSE 141 214 . KQ415081.1 32524 32743 + 141 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32525 32743 141 + . gene_id 1 ; sequence CbirOr321PSE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32525 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32525 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32525 32743 141 + . alignment_id 1 ; Query CbirOr321PSE ; Align 32525 142 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr321PSE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 137 -> 212 Target range: 11271 -> 11496 138 : IleThrPheGlyHisPheValProAspPheLeuAspIleValGluProLeuAsnGlnSer : 157 |||..!||| !||| :!! !!.!. ! !:!!! :!! ! !!! !|||:!!!!! IleValPheLeuHisThrLeuSerGlnThrThrAsnThrIleThrSerArgAsnGluThr 11272 : ATCGTCTTCTTGCATACGCTTTCGCAAACTACCAATACGATCACATCTCGAAACGAGACC : 11329 158 : ArgSerHisGlnMetIleIleLeuAlaGluTyrPheValAspAsnGluLysTyrPheTyr : 177 |||:!!:!! :!!|||:!!|||.!!||||||||||||||| !!|||:!!|||.!!||| ArgAlaAsnGlyLeuIleValLeuThrGluTyrPheValAspTyrGluGlnTyrIleTyr 11330 : AGAGCTAATGGCTTGATAGTTTTAACCGAATACTTCGTTGATTACGAGCAATACATTTAT : 11389 178 : PheIleAlaLeuHisValAsnValCysPhePheIlePheGlnIleThrLeuMetSerThr : 197 |||.!! !|||||| !||| ! .!!|||!!: ! !! !! !!!:.!!!:! ProIleThrThrHisValValValGlyIlePheMetGlyPheAlaIleGlnIleGlySer 11390 : CCAATTACGACCCACGTGGTTGTAGGAATTTTTATGGGTTTTGCTATTCAAATTGGCAGC : 11449 198 : ThrSerThrTyrIleSerTyrIleGlnHisValCysGlyMetPhe : 212 ! ! ! !!!!:! !!:!!!:..!|||||| !!||||||||| AspLeuLeuAsnMetIlePheMetMetHisValSerGlyMetPhe 11450 : GATCTTTTGAATATGATATTTATGATGCACGTCAGTGGAATGTTC : 11496 vulgar: CbirOr321PSE 137 212 . KQ415081.1 11271 11496 + 114 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 11272 11496 114 + . gene_id 2 ; sequence CbirOr321PSE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 11272 11496 . + . KQ415081.1 exonerate:protein2genome:local exon 11272 11496 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 11272 11496 114 + . alignment_id 2 ; Query CbirOr321PSE ; Align 11272 138 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr317NTE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 1 -> 87 Target range: 32488 -> 32743 2 : PheIleHisLeuSerAlaPheGlyPheValLeuIleTyrLeuValSerThrPheLeuSer : 21 |||:!!:!!:!!.!! !|||..!!:!!.!:!!:!: ! !!!:!! !!!:!:!!! ! PheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeu---ProTyrIleIle 32489 : TTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTG---CCGTACATTATC : 32543 22 : AspThrAlaValAspValAsnGluSerAsnIleArgAsnLeuProGlyLeuThrGluTyr : 41 |||..! !!.! !:!!|||||||||... !!.! |||||| ! ! !|||||| AspValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyr 32544 : GACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATAT : 32603 42 : PheIleAspGlnGlnLysTyrPhePheLeuIleLeuPheHisIleSerPhePheValTrp : 61 |||:!!||||||||||||||||||... !||| !!!.|||!!: ! !||| PheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThr 32604 : TTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACC : 32663 62 : CysGlyLeuAlaValValAlaAlaThrGluSerPheTyrMetSerLeuIleGlnHisAla : 81 !||||||.!!|||!.!.!!|||...:::|||...:::::: ...::: |||!.! LeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisVal 32664 : CTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTT : 32723 82 : CysGlyLeuPheGlnIle : 87 |||!.! !|||.!.||| CysAlaLysPheAsnIle 32724 : TGCGCCAAATTCAATATT : 32743 vulgar: CbirOr317NTE 1 87 . KQ415081.1 32488 32743 + 136 M 15 45 G 1 0 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32489 32743 136 + . gene_id 1 ; sequence CbirOr317NTE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32489 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32489 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32489 32743 136 + . alignment_id 1 ; Query CbirOr317NTE ; Align 32489 2 45 ; Align 32534 18 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr317NTE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 20 -> 132 Target range: 11301 -> 12299 21 : SerAspThrAlaValAspValAsnGluSerAsnIleArgAsnLeuProGlyLeuThrGlu : 40 !!!:!!||| !..!..! !||||||!!!!.. !!.!..!||| !! !||||||||| ThrAsnThrIleThrSerArgAsnGluThrArgAlaAsnGlyLeuIleValLeuThrGlu 11302 : ACCAATACGATCACATCTCGAAACGAGACCAGAGCTAATGGCTTGATAGTTTTAACCGAA : 11359 41 : TyrPheIleAspGlnGlnLysTyrPhePheLeuIleLeuPheHisIleSerPhePheVal : 60 ||||||:!!||| ! :!!:!!|||.!!!:!! !||| ! !|||:!: ! ! :!! TyrPheValAspTyrGluGlnTyrIleTyrProIleThrThrHisValValValGlyIle 11360 : TACTTCGTTGATTACGAGCAATACATTTATCCAATTACGACCCACGTGGTTGTAGGAATT : 11419 61 : TrpCysGlyLeuAlaValValAlaAlaThrGluSerPheTyrMetSerLeuIleGlnHis : 80 !:: |||!!!|||:!! ! !!.!!:!!!: !!!. !!|||! !!!!!!:..!||| PheMetGlyPheAlaIleGlnIleGlySerAspLeuLeuAsnMetIlePheMetMetHis 11420 : TTTATGGGTTTTGCTATTCAAATTGGCAGCGATCTTTTGAATATGATATTTATGATGCAC : 11479 81 : AlaCysGlyLeuPheGlnIleAla{Se} >>>> Target Intron 1 >>>> {r} : 89 !.! !!|||:!!|||.!. ! !{.!} 662 bp {!} ValSerGlyMetPheAspAlaIle{Gl}++ -+{y} 11480 : GTCAGTGGAATGTTCGACGCAATC{GG}gt.........................tg{C} : 12170 90 : TyrArgIleGluGlnAlaLeuHisLysAspLeuValArgAsnValThrSerIleValGlu : 109 !||||||! !! !! !! ||| ! !..!!:! ! !.!!! :!!::: ThrArgIleValAlaGluHisLeuPheAspLysTyrGluSerSerAspGlyLysIleAsp 12171 : ACTAGAATTGTCGCAGAGCATCTGTTTGACAAGTACGAAAGTTCTGACGGGAAGATCgac : 12228 110 : ArgAsnThrIleIleAsnArgLysLeuIleSerGlyIleAsnMetHisLysArgAlaIle : 129 ...||| |||...::! !!:!|||:!! !! !:!:||||||||||||||| ::: GluAsnLeuIlePheHisAlaArgLeuLeuArgLeuValAsnMetHisLysArgAsnLeu 12229 : gaaaatttgattttccaCGCGAGACTGCTTCGTCTTGTGAATAtgcataaaagaaattta : 12288 130 : GluPheVal : 132 ::: ||| LysSerVal 12289 : aagtcAGTG : 12299 vulgar: CbirOr317NTE 20 132 . KQ415081.1 11301 12299 + 127 M 68 204 S 0 2 5 0 2 I 0 658 3 0 2 S 1 1 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 11302 12299 127 + . gene_id 2 ; sequence CbirOr317NTE ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 11302 11507 . + . KQ415081.1 exonerate:protein2genome:local exon 11302 11507 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 11508 11509 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 11508 12169 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 12168 12169 . + . intron_id 0 ; splice_site "TG" KQ415081.1 exonerate:protein2genome:local cds 12170 12299 . + . KQ415081.1 exonerate:protein2genome:local exon 12170 12299 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 11302 12299 127 + . alignment_id 2 ; Query CbirOr317NTE ; Align 11302 21 204 ; Align 12171 90 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr317NTE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 206 -> 267 Target range: 13656 -> 13909 207 : ArgIleTyrAsnValGlnTrpTyrThrAlaProLeuLysAlaGlnLysLeuLeuLeuTyr : 226 |||! !!:!::!! !:!!|||||||||||||||:!!|||:!!|||||| !:!!|||!:! ArgSerPheSerGlyLysTrpTyrThrAlaProValLysSerGlnLysThrValLeuPhe 13657 : CGTAGCTTTTCTGGGAAATGGTACACAGCGCCGGTAAAATCCCAGAAAACGGTTCTGTTC : 13714 227 : LeuMetGlnArgThrMetArgHisCysThrIleValIleGlyGlyLeuPheValThrSer : 246 |||||||||!:! !!!:!:!! |||! !|||! !:!! !..! ! ! !.!.!!.!! LeuMetGlnLysPheIleLysProCysLysIleGluValIleSerThrValAlaAlaGly 13715 : CTCATGCAGAAATTCATAAAACCGTGCAAGATAGAAGTTATATCCACGGTGGCCGCAGGT : 13774 247 : LeuGlnGlyPheAlaSer >>>> Target Intron 1 >>>> LeuThrAsnMetS : 257 !:!! !!:!|||||| 70 bp :!!..!.!.!!:. SerGluThrTyrAlaSer++ ++IleValGlnIleG 13775 : AGCGAGACGTACGCGAGCgt.........................agATTGTGCAGATCG : 13877 258 : erValSerTyrPheMetValIleSerSerVal : 267 !! !!|||||||||||||||:!!! !|||:!! lyPheSerTyrPheMetValLeuTyrSerLeu 13878 : GTTTCTCCTACTTCATGGTTCTCTACTCGTTG : 13909 vulgar: CbirOr317NTE 206 267 . KQ415081.1 13656 13909 + 107 M 46 138 5 0 2 I 0 66 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 13657 13909 107 + . gene_id 3 ; sequence CbirOr317NTE ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 13657 13794 . + . KQ415081.1 exonerate:protein2genome:local exon 13657 13794 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 13795 13796 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 13795 13864 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 13863 13864 . + . intron_id 0 ; splice_site "aG" KQ415081.1 exonerate:protein2genome:local cds 13865 13909 . + . KQ415081.1 exonerate:protein2genome:local exon 13865 13909 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 13657 13909 107 + . alignment_id 3 ; Query CbirOr317NTE ; Align 13657 207 138 ; Align 13865 253 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr317NTE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 27 -> 87 Target range: 22116 -> 22296 28 : AsnGluSerAsnIleArgAsnLeuProGlyLeuThrGluTyrPheIleAspGlnGlnLys : 47 |||||||||:!!:!!!.!!.!:!!||| !! |||||||||...||||||:!!||| AsnGluSerHisValHisThrIleProPheGlnGlyGluTyrPhePheAspGlnGluLys 22117 : AACGAATCTCACGTACACACTATTCCGTTTCAaggggaatattttttcgaccAAGAGAAA : 22174 48 : TyrPhePheLeuIleLeuPheHisIleSerPhePheValTrpCysGlyLeuAlaValVal : 67 !!.!. ! !!!|||:!!.!.|||!!:! !.!! ||| ! !! !..!:!!!.! AsnMetValPheIleIleLeuHisMetIleLeuThrValThrIleThrHisCysIleAla 22175 : AATATGGTGTTCATTATACTGCACATGATACTCACAGTTACAATCACACATTGCATTGCT : 22234 68 : AlaAlaThrGluSerPheTyrMetSerLeuIleGlnHisAlaCysGlyLeuPheGlnIle : 87 !.! !|||!!:! !.!!! :!: !|||! !..!|||||||||!.!|||||| :!! ValMetThrAspMetIleLeuLeuValLeuThrMetHisAlaCysAlaLeuPheAlaVal 22235 : GTAATGACTGATATGATTTTGCTAGTTTTAACCATGCATGCCTGTGCCTTGTTCGCTGTT : 22294 vulgar: CbirOr317NTE 27 87 . KQ415081.1 22116 22296 + 104 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 22117 22296 104 + . gene_id 4 ; sequence CbirOr317NTE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 22117 22296 . + . KQ415081.1 exonerate:protein2genome:local exon 22117 22296 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 22117 22296 104 + . alignment_id 4 ; Query CbirOr317NTE ; Align 22117 28 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr318 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 119 -> 215 Target range: 32461 -> 32746 120 : ArgAspPheIleThrIleThrIleThrCysPheTyrLeuIleIleLeuPheValThrVal : 139 ||| |||... ||||||! ! !! ! ! |||:!! !|||!!!! ! !.!!:!! ArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIle 32462 : cgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATA : 32519 140 : ValPheLeuTrpProAsnIleLeuAsnIleValMetProLeuAsnGluSerArgArgSer : 159 ||| !!! !||| !!|||:!!:!!:!::!! !||||||||||||||||||!.! ValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHis--- 32520 : GTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACAC--- : 32579 160 : ArgGlnPheProAspAlaMetGluTyrPheIleAspGlnGluLysTyrIleTyrLeuLeu : 179 !.! !.!.||| !!||| |||||||||:!!||||||:::||||||... !:!! HisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIle 32580 : CATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATC : 32636 180 : ThrPheTyrSerValValIleAlaPheValThrIleSerValValLeuSerIleGluAla : 199 .!!!!.:!!! !:!!! !! !!.! !:!! !:!:!!!|||!.! !:!!::::::::: AlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSer 32637 : GCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattca : 32696 200 : PheSerValLeuHisIleHisHisIleCysAlaMetPheGlnIleVal : 215 ... :::... ::: !|||:!!||||||! |||.!.|||:!! IlePheIlePhePheMetPheHisValCysAlaLysPheAsnIleLeu 32697 : attttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATTCTC : 32746 vulgar: CbirOr318 119 215 . KQ415081.1 32461 32746 + 137 M 39 117 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32462 32746 137 + . gene_id 1 ; sequence CbirOr318 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32462 32746 . + . KQ415081.1 exonerate:protein2genome:local exon 32462 32746 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32462 32746 137 + . alignment_id 1 ; Query CbirOr318 ; Align 32462 120 117 ; Align 32579 160 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr325PI(F) Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 135 -> 211 Target range: 32512 -> 32743 136 : TrpAlaIleGlnIleAlaIleProTyr<->LeuAspAsnValThrProIleAsnGlyCys : 154 !::|||||| ! ! !:!:|||||| :!!||| :!!.!!|||:!!|||! !! ! TyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSer 32513 : TACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCC : 32570 155 : ArgProHisArgLeuTyrIleAlaValGluTyrPheIleAspGlnGluLysTyrTyrTyr : 174 |||! !||| !||| !|||! !|||||||||:!!||||||:::||||||::: ArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeu 32571 : CGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttccta : 32630 175 : ValIleLeuIleHisMetAsnAlaAlaLeuPheIleGlyIleLeuSerLeuMetAlaSer : 194 !||| !:!:|||||| !!.!.!!:!! !:!!|||:!: ! ! !! !||| ProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaVal 32631 : ccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtc : 32690 195 : AlaThrLeuMetLeuMetPhePheGlnHisAlaCysGlyMetPheLysIle : 211 ::::::...:::...|||... |||!.!|||!.!! |||!!.||| AspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32691 : gattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr325PI(F) 135 211 . KQ415081.1 32512 32743 + 129 M 9 27 G 0 3 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32513 32743 129 + . gene_id 1 ; sequence CbirOr325PI(F) ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32513 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32513 32743 . + . insertions 3 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32513 32743 129 + . alignment_id 1 ; Query CbirOr325PI(F) ; Align 32513 136 27 ; Align 32543 145 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr334 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 134 -> 211 Target range: 11265 -> 11496 135 : PheLeuIleAlaIleThrGlnValTrpSerAspValLeuAsnValIleLeuGlnIleAsn : 154 |||! !|||!.!.!! !!!...! |||.!...! !|||..!||| !... !||| PheSerIleValPheLeuHisThrLeuSerGlnThrThrAsnThrIleThrSerArgAsn 11266 : TTCTCTATCGTCTTCTTGCATACGCTTTCGCAAACTACCAATACGATCACATCTCGAAAC : 11323 155 : ValSerArgSerHisAsnValProIleIleThrGluTyrPheIleSerGlnGluLysTyr : 174 ! !!!!|||:!!:!!..!:!! !:!!:!!||||||||||||:!!..! ! |||:!!||| GluThrArgAlaAsnGlyLeuIleValLeuThrGluTyrPheValAspTyrGluGlnTyr 11324 : GAGACCAGAGCTAATGGCTTGATAGTTTTAACCGAATACTTCGTTGATTACGAGCAATAC : 11383 175 : TyrTyrLeuIleMetLeuHisGlnThrThrAlaValTyrIleGlyValPheThrThrVal : 194 !|||! !|||! ! !||| !..!..!!.!:!!!:!!!:||| !! !! ! !:!! IleTyrProIleThrThrHisValValValGlyIlePheMetGlyPheAlaIleGlnIle 11384 : ATTTATCCAATTACGACCCACGTGGTTGTAGGAATTTTTATGGGTTTTGCTATTCAAATT : 11443 195 : AlaIleGlyThrMetLeuIleAlaPheTyrHisAsnIleCysGlyValPhe : 211 !.!! !! ! !:!! !!!: !||| :!!:!! !!|||:!!||| GlySerAspLeuLeuAsnMetIlePheMetMetHisValSerGlyMetPhe 11444 : GGCAGCGATCTTTTGAATATGATATTTATGATGCACGTCAGTGGAATGTTC : 11496 vulgar: CbirOr334 134 211 . KQ415081.1 11265 11496 + 103 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 11266 11496 103 + . gene_id 1 ; sequence CbirOr334 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 11266 11496 . + . KQ415081.1 exonerate:protein2genome:local exon 11266 11496 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 11266 11496 103 + . alignment_id 1 ; Query CbirOr334 ; Align 11266 135 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr329INT Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 53 -> 134 Target range: 32500 -> 32743 54 : SerLeuPheIleLeuIleIleSerGlnThrTrpMetAspIleCysAspValValLeuArg : 73 .!!:!!||| !! ! !||| !||| ! ! ! !!||| !||||||:!! !! ! GlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaPro 32501 : GGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCT : 32558 74 : IleAsnThrSerArgSerHisAsnLeuMetIleMetThrGluTyrPheValAspGlnGlu : 93 :!!||| !|||||| !||| ||| ! ! !||||||||||||||||||::: LeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGln 32559 : CTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaa : 32618 94 : LysTyrTyrTyrPheIleLeuLeuHisIleAsnValThrValSerIleAlaIlePheSer : 113 ||||||::: ||| !||||||!!: !! !||||||!!!:!!!.!:!: ! LysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrVal 32619 : aaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTC : 32678 114 : ValMetAlaMetGlyThrMetPheLeuThrPhePheGlnTyrSerTyrGlyMetPheArg : 133 !.!! !|||::: ::::::|||::: |||... :!! !! !!.!! |||!.! AlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsn 32679 : GCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAAT : 32738 134 : Ile : 134 ||| Ile 32739 : ATT : 32743 vulgar: CbirOr329INT 53 134 . KQ415081.1 32500 32743 + 119 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32501 32743 119 + . gene_id 1 ; sequence CbirOr329INT ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32501 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32501 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32501 32743 119 + . alignment_id 1 ; Query CbirOr329INT ; Align 32501 54 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr329INT Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 36 -> 132 Target range: 11208 -> 11496 37 : PheCysAlaAsnLeuMetAlaLeuIleIlePheGlnValIleAlaValCysSerLeuPhe : 56 ||| ! !!!!.|||.!.! !!!!:!!! .!!! !||| !:!! !! !|||||| PheHisProLysLeuPheAspPheValThrIleProValSerSerCysLeuLeuLeuPhe 11209 : TTTCACCCTAAACTTTTCGATTTTGTCACGATTCCAGTGTCCTCATGTTTGCTATTGTTC : 11266 57 : IleLeuIleIleSerGlnThrTrpMetAspIleCysAspValValLeuArgIleAsnThr : 76 !:!!:!!.!!! !!!.||| !.!.! ! !:!!..!:!! ! ! !||| ! SerIleValPheLeuHisThrLeuSerGlnThrThrAsnThrIleThrSerArgAsnGlu 11267 : TCTATCGTCTTCTTGCATACGCTTTCGCAAACTACCAATACGATCACATCTCGAAACGAG : 11326 77 : SerArgSerHisAsnLeuMetIleMetThrGluTyrPheValAspGlnGluLysTyrTyr : 96 !!!|||:!!:!!..!|||!!::!!:!:|||||||||||||||||| ! |||:!!||| ! ThrArgAlaAsnGlyLeuIleValLeuThrGluTyrPheValAspTyrGluGlnTyrIle 11327 : ACCAGAGCTAATGGCTTGATAGTTTTAACCGAATACTTCGTTGATTACGAGCAATACATT : 11386 97 : TyrPheIleLeuLeuHisIleAsnValThrValSerIleAlaIlePheSerValMetAla : 116 ||| ||| ! !|||:!: !||| !:!!! !!!:!.!.!! !! ! !!!:!.! TyrProIleThrThrHisValValValGlyIlePheMetGlyPheAlaIleGlnIleGly 11387 : TATCCAATTACGACCCACGTGGTTGTAGGAATTTTTATGGGTTTTGCTATTCAAATTGGC : 11446 117 : MetGlyThrMetPheLeuThrPhePheGlnTyrSerTyrGlyMetPhe : 132 ! ! ! !:!! !:!!! !|||.!...!:!! ! !||||||||| SerAspLeuLeuAsnMetIlePheMetMetHisValSerGlyMetPhe 11447 : AGCGATCTTTTGAATATGATATTTATGATGCACGTCAGTGGAATGTTC : 11496 vulgar: CbirOr329INT 36 132 . KQ415081.1 11208 11496 + 111 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 11209 11496 111 + . gene_id 2 ; sequence CbirOr329INT ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 11209 11496 . + . KQ415081.1 exonerate:protein2genome:local exon 11209 11496 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 11209 11496 111 + . alignment_id 2 ; Query CbirOr329INT ; Align 11209 37 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr314 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 130 -> 213 Target range: 32494 -> 32743 131 : TyrIleAlaIlePheGlyPheIleMetMetGluValLeuProLysIleLeuAspIleVal : 150 ||||||!.!||||||..!!:! !!!::!!:!! !!|||||| ! |||:!!|||:!::!! TyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIle 32495 : TACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATA : 32552 151 : ValProLeuAsnGluSerArgProValHisLeuLeuGlyValAlaThrLeuPhePheAsp : 170 !.!||||||||||||||||||! ! ! |||! ! !!.!!.! !! !||| !!||| AlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPheValAsp 32553 : GCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGAC : 32612 171 : GluGluLysTyrPhePheProIleLeuGlyHisMetThrValAlaLeuLeuSerGluThr : 190 ::::::|||||||||...|||||| ! !|||||| !! !.!!:!! ! !! ! GlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeu 32613 : cagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTG : 32672 191 : ThrThrIleIleAlaThrGluThrValGlyLeuIleLeuIleGlnHisLeuCysGlyLeu : 210 |||..! !! |||...::::::::: :::......::: |||:!!|||!.! ! ThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLys 32673 : ACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAA : 32732 211 : PheLysIle : 213 |||!!.||| PheAsnIle 32733 : TTCAATATT : 32743 vulgar: CbirOr314 130 213 . KQ415081.1 32494 32743 + 151 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32495 32743 151 + . gene_id 1 ; sequence CbirOr314 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32495 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32495 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32495 32743 151 + . alignment_id 1 ; Query CbirOr314 ; Align 32495 131 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr322 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 132 -> 214 Target range: 22053 -> 22299 133 : GlyThrLeuAlaPheIleLeuThrMetPheValProAspValLeuAspIleIleThrPro : 152 |||! ! ! !|||:!! !.!!! !.!!:!!||| !|||:!! !! !||| !||| GlyIleGlyLeuPheValThrAlaThrLeuLeuProIleValMetCysArgIleGlnPro 22054 : GGCATAGGACTTTTCGTTACAGCGACGCTTCTACCAATCGTAATGTGTAGAATACAGCCA : 22111 153 : LeuAspGluProArgProArgGlnLeuProValGlnIleGluPhePhePheAspGlnAsp : 172 ! !:!!||| !!!.! !!.! :!!||| !!||| |||:::||||||||||||!!: ArgAsnGluSerHisValHisThrIleProPheGlnGlyGluTyrPhePheAspGlnGlu 22112 : CGTAACGAATCTCACGTACACACTATTCCGTTTCAaggggaatattttttcgaccAAGAG : 22171 173 : ArgTyrPheTyrLeuPheSerPheIlePheIleIleValAlaPheLeuGlyMetThrVal : 192 !:! !!.!. !!!.!!! !.!. !.!.|||:!!..!!.! :!! ! !:!! LysAsnMetValPheIleIleLeuHisMetIleLeuThrValThrIleThrHisCysIle 22172 : AAAAATATGGTGTTCATTATACTGCACATGATACTCACAGTTACAATCACACATTGCATT : 22231 193 : LeuMetAlaThrGluAsnMetTyrMetLeuPheThrGlnHisAlaCysGlyLeuPheLys : 212 !:!: !|||!!:! !!:! :!::!!!!.|||..!|||||||||!.!|||||| AlaValMetThrAspMetIleLeuLeuValLeuThrMetHisAlaCysAlaLeuPheAla 22232 : GCTGTAATGACTGATATGATTTTGCTAGTTTTAACCATGCATGCCTGTGCCTTGTTCGCT : 22291 213 : LeuLeu : 214 :!!:!! ValVal 22292 : GTTGTT : 22299 vulgar: CbirOr322 132 214 . KQ415081.1 22053 22299 + 106 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 22054 22299 106 + . gene_id 1 ; sequence CbirOr322 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 22054 22299 . + . KQ415081.1 exonerate:protein2genome:local exon 22054 22299 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 22054 22299 106 + . alignment_id 1 ; Query CbirOr322 ; Align 22054 133 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr326 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 121 -> 213 Target range: 32467 -> 32743 122 : PheThrThrValLeuThrAlaLeuSerAlaSerPheIlePheAlaValLeuValAsnGln : 141 ||| :!! !|||!.!!!! ! !! ! ||||||:!! ! !:!! ||| PhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIleValGln 32468 : tttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAA : 32525 142 : PheCysProGlyIlePheAspValIleLeuSerIleAsnLysSerArgSerHisHisLeu : 161 ||| ||| !|||.!!||||||||| ! !!:!!|||:!!|||||| !||| ||| PheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHisValLeu 32526 : TTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTG : 32585 162 : TyrLeuLysMetGluTyrPheLeuAspGlnGluLysTyrLeuTyrPheIleLeuLeuHis : 181 ! ! |||||||||:!!||||||:::||||||... ||| !|||||| ProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHis 32586 : CCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCAC : 32645 182 : IleSerLeuAlaIleSerIleAlaValAlaValLeuIleAlaIleGlyThrMetPheIle : 201 !!: ! !.!!:!!!!!:!!!.!:!!.!!||| !! |||::: ::::::|||||| MetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIle 32646 : ATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcata : 32705 202 : AlaTyrLeuGlnHisThrCysGlyMetPheArgIle : 213 :::::! |||..!|||!.!! |||!.!||| PhePheMetPheHisValCysAlaLysPheAsnIle 32706 : ttcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr326 121 213 . KQ415081.1 32467 32743 + 160 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32468 32743 160 + . gene_id 1 ; sequence CbirOr326 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32468 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32468 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32468 32743 160 + . alignment_id 1 ; Query CbirOr326 ; Align 32468 122 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr326 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 153 -> 213 Target range: 22116 -> 22296 154 : AsnLysSerArgSerHisHisLeuTyrLeuLysMetGluTyrPheLeuAspGlnGluLys : 173 |||:!!|||!.! !||| !:!! !!!:!: |||||||||...|||||||||||| AsnGluSerHisValHisThrIleProPheGlnGlyGluTyrPhePheAspGlnGluLys 22117 : AACGAATCTCACGTACACACTATTCCGTTTCAaggggaatattttttcgaccAAGAGAAA : 22174 174 : TyrLeuTyrPheIleLeuLeuHisIleSerLeuAlaIleSerIleAlaValAlaValLeu : 193 !!:!! ||||||:!!||||||!!:! !|||.!!:!!!!!|||.!! !..!:!! ! AsnMetValPheIleIleLeuHisMetIleLeuThrValThrIleThrHisCysIleAla 22175 : AATATGGTGTTCATTATACTGCACATGATACTCACAGTTACAATCACACATTGCATTGCT : 22234 194 : IleAlaIleGlyThrMetPheIleAlaTyrLeuGlnHisThrCysGlyMetPheArgIle : 213 :!! !! !! !! !!!:!!.:!!!.!! !..!|||.!!|||!.!:!!||| !:!! ValMetThrAspMetIleLeuLeuValLeuThrMetHisAlaCysAlaLeuPheAlaVal 22235 : GTAATGACTGATATGATTTTGCTAGTTTTAACCATGCATGCCTGTGCCTTGTTCGCTGTT : 22294 vulgar: CbirOr326 153 213 . KQ415081.1 22116 22296 + 111 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 22117 22296 111 + . gene_id 2 ; sequence CbirOr326 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 22117 22296 . + . KQ415081.1 exonerate:protein2genome:local exon 22117 22296 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 22117 22296 111 + . alignment_id 2 ; Query CbirOr326 ; Align 22117 154 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr324PSE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 123 -> 214 Target range: 32473 -> 32743 124 : IleIleLeuThrIleProThrValCysGlyLeuCysPheAsnSerIleMetLeuTyrSer : 143 :::||| !||| ! !..! ! !|||:!!! !! ! !!:!!|||:!!! !!:! ! LeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeu 32474 : ctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTG : 32531 144 : ProTyrIleLeuAspIleValMetProLysAsnGluSerTyrAlaIleHisIleMetGlu : 163 |||||||||:!!|||:!::!! !||| !||||||||| ! !|||:!!:!! ! ProTyrIleIleAspValIleAlaProLeuAsnGluSer---ArgHisHisValLeuPro 32532 : CCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCC---CGACACCATGTACTGCCG : 32588 164 : MetIleThrLysTyrPheArgValSerGluLysTyrTyrPheLeuValLeuValHisLeu : 183 ! !:!!|||||| !! !...:::||||||:::... !:!! !:!!|||:!! TyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMet 32589 : TACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATG : 32648 184 : AsnAlaThrCysThrAlaGlyLeuIleIleLeuIleGlyThrGlyThrMetMetIleSer : 203 !!.!||| !||| !||||||! :!! !! !.!... ::::::...||| LeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhe 32649 : CTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattc : 32708 204 : TyrPheLysHisAlaCysGlyMetPheGluIle : 214 :::... |||!.!|||!.!! |||.!.||| PheMetPheHisValCysAlaLysPheAsnIle 32709 : ttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr324PSE 123 214 . KQ415081.1 32473 32743 + 123 M 33 99 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32474 32743 123 + . gene_id 1 ; sequence CbirOr324PSE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32474 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32474 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32474 32743 123 + . alignment_id 1 ; Query CbirOr324PSE ; Align 32474 124 99 ; Align 32573 158 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 137 -> 218 Target range: 232 -> 475 138 : ValValIleGlnLeuAlaProAsnPheLeuAspPheValAlaProGlnAsnGluSerArgLeuH : 159 ||| !! ! !:!!.!!|||:!!.!!||||||.!!:!! !|||:!!|||||||||||| ! ValSerThrProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspV 233 : GTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAAAACGAGTCACGAGACG : 296 160 : isHisIleProIleThrAlaGluTyrPheValAspGlnGlnLysCysTyrLeuProIleLeuLe : 180 ! ! ! !!||| ! ||||||..!|||:!!!!.|||! ! !!:!! !|||:!! alAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleTh 297 : TAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTAC : 359 181 : uHisIleAspValIleAlaValValGlyPheThrThrValMetSerThrGluSerLeuPheAla : 201 !|||!!:! !:!: !:!!|||! !||| !..! !.!.:!! !!!:!!! !!:! ! rHisMetAlaSerValIleLeuValValPheTyrValTyrPheAlaCysAspThrSerTyrIle 360 : GCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACATA : 422 202 : AlaPheValGlnHisAlaIleGlyMetPheAlaIleAlaSerTyrArgIle : 218 ! !!|||||||||!.! !|||:!!!!.|||:!::!!.!. :::||| TyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly***LysIle 423 : TACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaatt : 475 vulgar: CbirOr320 137 218 . LHQN01023902.1 232 475 + 104 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 233 475 104 + . gene_id 1 ; sequence CbirOr320 ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 233 475 . + . LHQN01023902.1 exonerate:protein2genome:local exon 233 475 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 233 475 104 + . alignment_id 1 ; Query CbirOr320 ; Align 233 138 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr318 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 134 -> 234 Target range: 5002 -> 5296 135 : LeuPheValThrValValPheLeuTrpProAsnIleLeuAsnIleValMetProLeuAsnGl : 155 ||||||:!! !:!! !|||:!!! !||| ||||||:!!|||:!!|||||||||||||| LeuPheMetCysLeuProPheValSerPro---IleLeuAspIleLeuMetProLeuAsnGl 5003 : CTATTTATGTGCTTGCCGTTCGTGTCGCCG---ATTCTGGACATCCTTATGCCGTTGAACGA : 5060 156 : uSerArgArgSerArgGlnPheProAspAlaMetGluTyrPheIleAspGlnGluLysTyrI : 176 |!!! |||:!!||| !||| ! !! !! ! ||||||:!!|||:!!!!:|||||| uThr---ArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrH 5061 : GACG---CGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATC : 5120 177 : leTyrLeuLeuThrPheTyrSerValValIleAlaPheValThrIleSerValValLeuSer : 196 !||||||:!!..! :!!! ! !:!!:!!!.! ! :!! !||||||||| !!! !:!! isTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 5121 : ATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 5180 197 : IleGluAlaPheSerValLeuHisIleHisHisIleCysAlaMetPheGlnIleValSerTy : 217 !!!:||| !! !|||! ! !:!:!!.||| !|||!.!:!!!!. |||!.!.!!!! CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly** 5181 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTA : 5243 218 : rArgIleGluCysIleValLysLysAsnGluMetLysSerLeuAsnLeuVal : 234 !:!!:!! ! !:!!! !:!!|||! .!. ! ! !|||!!!||| *LeuValGlnGlyGlnLeuMetGluAsnGlyPheLeuTyrArgAsnPheVal 5244 : ATTAGTTCAAGGACAATTAATGGAAAATGGTTTTCTTTATAGAAATTTCGTT : 5296 vulgar: CbirOr318 134 234 . LHQN01025741.1 5002 5296 + 118 M 10 30 G 1 0 M 11 33 G 1 0 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5003 5296 118 + . gene_id 1 ; sequence CbirOr318 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5003 5296 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5003 5296 . + . insertions 0 ; deletions 2 LHQN01025741.1 exonerate:protein2genome:local similarity 5003 5296 118 + . alignment_id 1 ; Query CbirOr318 ; Align 5003 135 30 ; Align 5033 146 33 ; Align 5066 158 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr322 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 117 -> 213 Target range: 4948 -> 5236 118 : AsnAlaLysPheTyrThrIlePheSerGlySerIleValTyrProGlyThrLeuAlaPheIl : 138 ::! !..!|||||| !! |||..! ! ! !:!!! ! !!.!! ! !|||!! SerLeuSerPheTyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMe 4949 : TCTCTGTCATTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTAT : 5009 139 : eLeuThrMetPheValProAspValLeuAspIleIleThrProLeuAspGluProArgProA : 159 :! ! ! !|||||| !! :!!|||||||||:!!! !||||||:!!||| !!||| !!| tCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaA 5010 : GTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCAC : 5072 160 : rgGlnLeuProValGlnIleGluPhePhePheAspGlnAspArgTyrPheTyrLeuPheSer : 179 || !!!! ! !! ! ! ! !:!||| !!|||:!!|||!:!||| !||||||.!! ! rgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleVal 5073 : GGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTA : 5132 180 : PheIlePheIleIleValAlaPheLeuGlyMetThrValLeuMetAlaThrGluAsnMetTy : 200 !.!. !:!!|||!.! ! :!! !!!::!!|||!!! ||| !!!: !! || GlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTy 5133 : GGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTA : 5195 201 : rMetLeuPheThrGlnHisAlaCysGlyLeuPheLysLeu : 213 |:!!! ! !..!||||||||||||||||||!!. :!! rValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 5196 : CGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 5236 vulgar: CbirOr322 117 213 . LHQN01025741.1 4948 5236 + 130 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4949 5236 130 + . gene_id 1 ; sequence CbirOr322 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4949 5236 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4949 5236 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4949 5236 130 + . alignment_id 1 ; Query CbirOr322 ; Align 4949 118 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr326 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 166 -> 214 Target range: 11588 -> 11732 167 : TyrPheLeuAspGlnGluLysTyrLeuTyrPheIleLeuLeuHisIleSerLeuAlaIle : 186 ||||||:!!|||:!!! !:!!|||! !|||!:!|||:!!|||||| !!!!! !.!!:!! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrVal 11589 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTT : 11646 187 : SerIleAlaValAlaValLeuIleAlaIleGlyThrMetPheIleAlaTyrLeuGlnHis : 206 ! !|||!.!|||!.!|||! ! !||| !! !|||! !:!!!:!.! :!!|||||| LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 11647 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 11706 207 : ThrCysGlyMetPheArgIleAla : 214 |||||||||:!!||| !:!:||| ThrCysGlyLeuPheAlaValAla 11707 : ACTTGCGGACTGTTCGCCGTGGCC : 11732 vulgar: CbirOr326 166 214 . LHQN01025741.1 11588 11732 + 119 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11589 11732 119 + . gene_id 1 ; sequence CbirOr326 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11589 11732 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11589 11732 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11589 11732 119 + . alignment_id 1 ; Query CbirOr326 ; Align 11589 167 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr314 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 136 -> 219 Target range: 5005 -> 5254 137 : PheIleMetMetGluValLeuProLysIleLeuAspIleValValProLeuAsnGluSerAr : 157 |||!!: :!! ! !!:!! !! !||||||||||||:!!:!!||||||||||||!!!|| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5006 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5066 158 : gProValHisLeuLeuGlyValAlaThrLeuPhePheAspGluGluLysTyrPhePheProI : 178 | !! ! !!!:!! ! !||| !! !||| !!||||||!!:|||||| !!:! !| gAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuI 5067 : AGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGA : 5129 179 : leLeuGlyHisMetThrValAlaLeuLeuSerGluThrThrThrIleIleAlaThrGluThr : 198 ||:!!||||||||| !:!!!.!:!!:!!! ! ! !:!!..!.!! !||| !!!:.!! leValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 5130 : TCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 5189 199 : ValGlyLeuIleLeuIleGlnHisLeuCysGlyLeuPheLysIleAlaSerPheArgIleGl : 219 ! !:!! ! !:!:|||||| !|||||||||!!. ||||||.!!! !:!!|| AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***LeuValGl 5190 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCA : 5252 220 : n : 219 | n 5253 : A : 5254 vulgar: CbirOr314 136 219 . LHQN01025741.1 5005 5254 + 133 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5006 5254 133 + . gene_id 1 ; sequence CbirOr314 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5006 5254 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5006 5254 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5006 5254 133 + . alignment_id 1 ; Query CbirOr314 ; Align 5006 137 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr314 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 130 -> 214 Target range: 11480 -> 11732 131 : TyrIleAlaIlePheGlyPheIleMetMetGluValLeuProLysIleLeuAspIleVal : 150 ||||||..! ||| !||||||...:!! ! ! ! !!::!:!::!!:!! ! TyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArgLeuValAsnSerTyr 11481 : TACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGATTGGTGAACTCGTAC : 11538 151 : ValProLeuAsnGluSerArgProValHisLeuLeuGlyValAlaThrLeuPhePheAsp : 170 ! !!! !||| !!!!! ! !:!!!!.!!!:!! ! !!.! !! !||| !!||| LysThrGlnAsnIleThrProSerLeuGlnPheValIleProGlyTyrTyrPheValAsp 11539 : AAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGAC : 11598 171 : GluGluLysTyrPhePheProIleLeuGlyHisMetThrValAlaLeuLeuSerGluThr : 190 |||! !:!!|||!:!!:! !|||:!! !||| ||| !.!!:!!|||! !! !..! GluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeuIleValVal 11599 : GAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTG : 11658 191 : ThrThrIleIleAlaThrGluThrValGlyLeuIleLeuIleGlnHisLeuCysGlyLeu : 210 ..!..! ! !||| !!!:||| ! !:!!:!!|||:!:|||||| !||||||||| ValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeu 11659 : GTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTG : 11718 211 : PheLysIleAla : 214 ||| :!:||| PheAlaValAla 11719 : TTCGCCGTGGCC : 11732 vulgar: CbirOr314 130 214 . LHQN01025741.1 11480 11732 + 103 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11481 11732 103 + . gene_id 2 ; sequence CbirOr314 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11481 11732 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11481 11732 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11481 11732 103 + . alignment_id 2 ; Query CbirOr314 ; Align 11481 131 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr325PI(F) Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 134 -> 212 Target range: 5005 -> 5239 135 : PheTrpAlaIleGlnIleAlaIleProTyrLeuAspAsnValThrProIleAsnGlyCysAr : 155 ||| !..!:!:! !.!!!.! ||| !||||||! !:!!! !|||:!:|||! ! || PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5006 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5066 156 : gProHisArgLeuTyrIleAlaValGluTyrPheIleAspGlnGluLysTyrTyrTyrValI : 176 | !!!.. !!!! ! ! !!!.! ! ||||||:!!|||:!!!!:||||||:!!|||:!!| gAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuI 5067 : AGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGA : 5129 177 : leLeuIleHisMetAsnAlaAlaLeuPheIleGlyIleLeuSerLeuMetAlaSerAlaThr : 196 ||:!! |||||| !! !!.!:!! ! !!: !|||! ! !!!! |||!!!! !.!! leValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 5130 : TCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 5189 197 : LeuMetLeuMetPhePheGlnHisAlaCysGlyMetPheLysIleAla : 212 ! :!! ! ! |||||||||||||||:!!!!. |||||| AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla 5190 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCA : 5239 vulgar: CbirOr325PI(F) 134 212 . LHQN01025741.1 5005 5239 + 116 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5006 5239 116 + . gene_id 1 ; sequence CbirOr325PI(F) ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5006 5239 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5006 5239 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5006 5239 116 + . alignment_id 1 ; Query CbirOr325PI(F) ; Align 5006 135 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr325PI(F) Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 70 -> 212 Target range: 1208 -> 1828 71 : PheLeuSerIleLeuThrIleTyrTyrThrSerPheArgPheAsnIleLysThrValLysAs : 91 |||||||||:::||||||...||| ..!! !.!.!.! !!..! ! ! !:!!|||!! PheLeuSerValLeuThrPheTyrLeuVal***MetAsnAspThrLysLeuGlnLeuLysGl 1209 : TTTCTCTCTGtacttacattttatttggTATAAATGAACGATACGAAATTACAGCTAAAGGA : 1269 92 : pLeuMetGluGlnLeuHisCysAlaCysThrLysLeuArgGluGlnLysGluIleAlaIleI : 112 ::!!!!:||| ||| ! !! !!! ..!! ! !||| !:!!!..|||!!:! !|||! uMetIleGluCysLeuPheAsnAspTrpValThrThrArgProLysSerGluMetAspIleM 1270 : GATGATAGAGTGCTTATTCAACGATTGGGTAACGACACGGCCGAAAAGTGAAATGGACATTA : 1332 113 : leGlnGluTyrGlyArgThrAlaAsnArgValThrAla{Al} >>>> Target Intron : 125 !:.!.:!!|||!.!!:!! !!.!... ! !!!:! !{ } 194 bp etAspLysTyrAlaLysArgGlyArgPhePheSerArg{Le}++ 1333 : TGGACAAGTACGCTAAAAGAGGCCGGTTTTTCAGTCGT{TT}gt.................. : 1375 126 : 1 >>>> {a}LeuLeuPheGlyIleIleLysProAlaPheTrpAlaIleGlnIleAlaIl : 142 {!}:!! ! !.!! ! ! ! !||| :!!:!: !|||.!! +-{u}ValAsnGlyLeuPheCysTyrValIlePheThrSerValAlaIleThrPr 1376 : .......ac{A}GTAAACGGACTGTTTTGCTACGTTATATTCACCTCAGTGGCGATTACGCC : 1616 143 : eProTyrLeuAspAsnValThrProIleAsnGlyCysArgProHisArgLeuTyrIleAlaV : 163 !! ! !|||||| !:!!:!!|||! !|||! !! ||| ! ! !!!! ! ! !!! oArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValAspPheIleTyrProA 1617 : TCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTCATTTATCCTG : 1679 164 : alGluTyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnAlaAla : 183 .! ! ||| !:!!|||:!!|||:!!:!!||||||:!!:!::!! !|||||| !..!!.! laTyrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHisMetLeuCysVal 1680 : CATACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCACATGCTCTGCGTG : 1739 184 : LeuPheIleGlyIleLeuSerLeuMetAlaSerAlaThrLeuMetLeuMetPhePheGlnHi : 204 :!! !:!!! !.!!!!! !! !!!::!!!!!! !|||:!! :!!! .!! ! ||||| IleThrValValPhePheValTyrIleSerCysAspThrIleTyrMetAsnIleValGlnHi 1740 : ATAACTGTAGTGTTTTTCGTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCAACA : 1802 205 : sAlaCysGlyMetPheLysIleAla : 212 ||||||||||:!:.!.!!.:!!:!! sAlaCysGlyLeuLeuAsnValSer 1803 : CGCGTGCGGATTACTGAACGTCTCT : 1828 vulgar: CbirOr325PI(F) 70 212 . LHQN01025741.1 1208 1828 + 110 M 54 162 S 0 2 5 0 2 I 0 190 3 0 2 S 1 1 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1209 1828 110 + . gene_id 2 ; sequence CbirOr325PI(F) ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 1209 1372 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1209 1372 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 1373 1374 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 1373 1566 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 1565 1566 . + . intron_id 0 ; splice_site "AC" LHQN01025741.1 exonerate:protein2genome:local cds 1567 1828 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1567 1828 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1209 1828 110 + . alignment_id 2 ; Query CbirOr325PI(F) ; Align 1209 71 162 ; Align 1568 126 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr325PI(F) Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 164 -> 212 Target range: 11588 -> 11732 165 : TyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnAlaAlaLeu : 184 ||||||:!!|||:!!! !:!!||||||||| !|||:!!:!!||| !....!.!!:!! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrVal 11589 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTT : 11646 185 : PheIleGlyIleLeuSerLeuMetAlaSerAlaThrLeuMetLeuMetPhePheGlnHis : 204 !!.|||! !:!::!! !! ! |||!!!! !||| ! :!!:!:.!. ! |||||| LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 11647 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 11706 205 : AlaCysGlyMetPheLysIleAla : 212 .!!||||||:!!||| :!:||| ThrCysGlyLeuPheAlaValAla 11707 : ACTTGCGGACTGTTCGCCGTGGCC : 11732 vulgar: CbirOr325PI(F) 164 212 . LHQN01025741.1 11588 11732 + 105 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11589 11732 105 + . gene_id 3 ; sequence CbirOr325PI(F) ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11589 11732 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11589 11732 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11589 11732 105 + . alignment_id 3 ; Query CbirOr325PI(F) ; Align 11589 165 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr316 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 147 -> 224 Target range: 5035 -> 5266 148 : LeuAspPheThrThrAlaAlaAsnGluSerArgIleArgGluPheProAlaLeuIleGluCy : 168 ||||||.!! !! ! !! !||||||!!!||| !||| !||| ! !! ! ! ! ! LeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTy 5036 : CTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTA : 5096 169 : sPheIleAspHisGlnLysTyrPheTyrProIleLeuSerTyrMetPheLeuValIleValC : 189 !|||:!!|||.!..!.|||||| !||| !|||:!!.!!:!!|||!:!||||||:!:||| rPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValM 5097 : TTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAA : 5159 190 : ysGlyGlnThrThrMetIleAlaThrGluThrLeuTyrMetThrTyrThrGlnHisAlaCys : 209 ! :!!..!.!. !||| !!!:.!! !|||:!! ! !..!|||||||||||| etLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCys 5160 : TGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGC : 5219 210 : GlyLeuPheGluIleAlaAsnCysArgIleGluGlnAlaLeuLeu : 224 ||||||!!.! ||||||...! !:!!:!! ! !|||:!! GlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMet 5220 : GGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATG : 5266 vulgar: CbirOr316 147 224 . LHQN01025741.1 5035 5266 + 121 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5036 5266 121 + . gene_id 1 ; sequence CbirOr316 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5036 5266 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5036 5266 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5036 5266 121 + . alignment_id 1 ; Query CbirOr316 ; Align 5036 148 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr316 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 147 -> 215 Target range: 1624 -> 1828 148 : LeuAspPheThrThrAlaAlaAsnGluSerArgIleArgGluPheProAlaLeuIleGluCy : 168 ||||||.!!! !:!! !! !|||||||||||| !!!:||| ! !! ! ! ! ! LeuAspLeuIleSerProLysAsnGluSerArgGlyValAspPheIleTyrProAlaTyrTy 1625 : CTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTCATTTATCCTGCATACTA : 1685 169 : sPheIleAspHisGlnLysTyrPheTyrProIleLeuSerTyrMetPheLeuValIleValC : 189 ! !:!!|||.!.:!!:!!:!!!:!||| !:!::!!.!!:!!|||.!!! !||||||..! rGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHisMetLeuCysValIleThrV 1686 : CGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCACATGCTCTGCGTGATAACTG : 1748 190 : ysGlyGlnThrThrMetIleAlaThrGluThrLeuTyrMetThrTyrThrGlnHisAlaCys : 209 ! ! !..! |||:!! !!!:|||:!!||||||!.! !..!|||||||||||| alValPhePheValTyrIleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCys 1749 : TAGTGTTTTTCGTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGC : 1808 210 : GlyLeuPheGluIleAla : 215 ||||||.!..!.:!!:!! GlyLeuLeuAsnValSer 1809 : GGATTACTGAACGTCTCT : 1828 vulgar: CbirOr316 147 215 . LHQN01025741.1 1624 1828 + 105 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1625 1828 105 + . gene_id 2 ; sequence CbirOr316 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1625 1828 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1625 1828 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1625 1828 105 + . alignment_id 2 ; Query CbirOr316 ; Align 1625 148 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 139 -> 214 Target range: 1603 -> 1828 140 : IleGlnLeuAlaProAsnPheLeuAspPheValAlaProGlnAsnGluSerArgLeuHisHi : 160 :!: !:!!.!!|||..! !!||||||.!!:!!:!!|||:!!|||||||||||| ! ! ! ValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValAs 1604 : GTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGA : 1664 161 : sIleProIleThrAlaGluTyrPheValAspGlnGlnLysCysTyrLeuProIleLeuLeuH : 181 !.!! ! ! !!||| ! ||| !:!!|||:!!:!!:!! !|||! ! !:!::!! !| pPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyH 1665 : CTTCATTTATCCTGCATACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTC : 1727 182 : isIleAspValIleAlaValValGlyPheThrThrValMetSerThrGluSerLeuPheAla : 201 ||!!: ! !:!: !..!|||! !||| !..! !!!:||| !!!:!!!:!!!:! ! isMetLeuCysValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMet 1728 : ACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTCTACATCTCCTGTGACACGATCTACATG : 1787 202 : AlaPheValGlnHisAlaIleGlyMetPheAlaIleAla : 214 !.!!|||||||||||| !|||:!:.!. !:!!:!! AsnIleValGlnHisAlaCysGlyLeuLeuAsnValSer 1788 : AATATCGTGCAACACGCGTGCGGATTACTGAACGTCTCT : 1828 vulgar: CbirOr320 139 214 . LHQN01025741.1 1603 1828 + 106 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1604 1828 106 + . gene_id 1 ; sequence CbirOr320 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1604 1828 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1604 1828 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1604 1828 106 + . alignment_id 1 ; Query CbirOr320 ; Align 1604 140 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr323PC Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 167 -> 214 Target range: 11591 -> 11732 168 : PheLeuAspGlnGlnGlnPhePheTyrPheIleValSerAspPheAlaLeuIleAlaLeu : 187 |||:!!|||:!! !:!!!:!!:!|||!:!|||:!! ! !! .!!! !! !!.!||| PheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeu 11592 : TTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTG : 11649 188 : IleGlyMetThrThrPheIleAlaThrGluThrMetPheMetMetPheIleLeuHisAla : 207 |||! !:!!..!..!!:! !||| !!!:|||! !:!|||:!:.!.:!:! !|||.!! IleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThr 11650 : ATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACT : 11709 208 : CysGlyLeuPheAlaIleAla : 214 |||||||||||||||:!:||| CysGlyLeuPheAlaValAla 11710 : TGCGGACTGTTCGCCGTGGCC : 11732 vulgar: CbirOr323PC 167 214 . LHQN01025741.1 11591 11732 + 101 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11592 11732 101 + . gene_id 1 ; sequence CbirOr323PC ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11592 11732 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11592 11732 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11592 11732 101 + . alignment_id 1 ; Query CbirOr323PC ; Align 11592 168 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr317NTE Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 2 -> 88 Target range: 4984 -> 5239 3 : IleHisLeuSerAlaPheGlyPheValLeuIleTyrLeuValSerThrPheLeuSerAspTh : 23 ||| |||!!!||| ! !|||:!!! !:!: !!!|||||| !!.!!||| |||! IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeu---AspIl 4985 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTG---GACAT : 5042 24 : rAlaValAspValAsnGluSerAsnIleArgAsnLeuProGlyLeuThrGluTyrPheIleA : 44 ! !:!! :!!||||||!!!... !||| !!! ! !! !.!! ! ||||||:!!| eLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValA 5043 : CCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCG : 5105 45 : spGlnGlnLysTyrPhePheLeuIleLeuPheHisIleSerPhePheValTrpCysGlyLeu : 64 ||:!!.!.|||||| !!:!||||||:!! |||!!:! !.!! ! ||| !:!! spGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIle 5106 : ACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATC : 5165 65 : AlaValValAlaAlaThrGluSerPheTyrMetSerLeuIleGlnHisAlaCysGlyLeuPh : 85 :!!||| !!..!||| !!!::!! !|||:!!! ! !:!:||||||||||||||||||!! SerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLe 5166 : TCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTT : 5228 86 : eGlnIleAla : 88 . |||||| uAlaIleAla 5229 : GGCCATTGCA : 5239 vulgar: CbirOr317NTE 2 88 . LHQN01025741.1 4984 5239 + 116 M 18 54 G 1 0 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4985 5239 116 + . gene_id 1 ; sequence CbirOr317NTE ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4985 5239 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4985 5239 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 4985 5239 116 + . alignment_id 1 ; Query CbirOr317NTE ; Align 4985 3 54 ; Align 5039 22 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr317NTE Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 40 -> 88 Target range: 11588 -> 11732 41 : TyrPheIleAspGlnGlnLysTyrPhePheLeuIleLeuPheHisIleSerPhePheVal : 60 ||||||:!!|||:!! !:!!|||!:!!:!! !|||:!!.!!||| !!!!! ! ||| TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrVal 11589 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTT : 11646 61 : TrpCysGlyLeuAlaValValAlaAlaThrGluSerPheTyrMetSerLeuIleGlnHis : 80 ! ! !! !:!!!.!||| !..!||| !!!:!!! !|||||| !|||:!:|||||| LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 11647 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 11706 81 : AlaCysGlyLeuPheGlnIleAla : 88 .!!|||||||||||| :!:||| ThrCysGlyLeuPheAlaValAla 11707 : ACTTGCGGACTGTTCGCCGTGGCC : 11732 vulgar: CbirOr317NTE 40 88 . LHQN01025741.1 11588 11732 + 109 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11589 11732 109 + . gene_id 2 ; sequence CbirOr317NTE ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11589 11732 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11589 11732 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11589 11732 109 + . alignment_id 2 ; Query CbirOr317NTE ; Align 11589 41 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr313PI Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 74 -> 185 Target range: 4939 -> 5272 75 : IleValLysTyrValThrPheTyrPheIleThrGluAsnAlaLeuIleTyrMetCysLeuPh : 95 :!!! !:::! !:!!:!!|||||||||! !|||!..!.!! !|||! :!:||| ! LeuGluArgSerLeuSerPheTyrPheThrPheGluThrValHisIleSerLeuCysAlaAl 4940 : TTAGAACGTTCTCTGTCATTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGC : 5000 96 : eIleIleIleCysIleGlnTyrValProCysIleLeuAspValValMetProLeuAsnAsnS : 116 !:!!.!!!!:|||:!:! !!:!||| !! |||||||||:!!:!!||||||||||||.!.! aLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluT 5001 : TCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGA : 5063 117 : erArgArgValAlaLeuLeuPheGlnValGluTyrLeuValAsnHisGluGluTyrTyrHis : 136 !!||| ! ! !!!!:!!!:!! !!.! ! |||!!!|||:!!.!.!!::!!|||:!!:!! hrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyr 5064 : CGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTAC : 5123 137 : ValIleGlnLeuHisLeuHisIleGlyLeuLeuValAlaAlaThrThrValLeuAlaThrGl : 157 :!!||| ! !|||:!!:!!:!!! !:!!:!!:!! ! !:!!..! !!! !||| !!! LeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAs 5124 : TTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGA : 5186 158 : uSerPheCysLeuThrLeuSerIleHisAlaPheAlaMetPheLysIleAlaSerTyrArgM : 178 ::!! !! !:!! ! ! ! !||||||! !!.!:!!!!. ||||||.!!!! !: pAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***LeuV 5187 : TGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAG : 5249 179 : etGlnArgIleIleAspLysAsn : 185 !:||| !! !:!! :!!||| alGlnGlyGlnLeuMetGluAsn 5250 : TTCAAGGACAATTAATGGAAAAT : 5272 vulgar: CbirOr313PI 74 185 . LHQN01025741.1 4939 5272 + 138 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4940 5272 138 + . gene_id 1 ; sequence CbirOr313PI ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4940 5272 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4940 5272 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4940 5272 138 + . alignment_id 1 ; Query CbirOr313PI ; Align 4940 75 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr325PI(F) Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 164 -> 212 Target range: 1134 -> 990 165 : TyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnAlaAlaLeuPh : 185 ||||||:!!|||:!!! !:!!||||||||| !|||:!!:!!||| !....!.!!:!!!! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLe 1134 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTT : 1074 186 : eIleGlyIleLeuSerLeuMetAlaSerAlaThrLeuMetLeuMetPhePheGlnHisAlaC : 206 .|||! !:!::!! !! ! |||!!!! !||| ! :!!:!:.!. ! ||||||.!!| uIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrC 1073 : GATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTT : 1011 207 : ysGlyMetPheLysIleAla : 212 |||||:!!||| :!:||| ysGlyLeuPheAlaValAla 1010 : GCGGACTGTTCGCCGTGGCC : 991 vulgar: CbirOr325PI(F) 164 212 . LHQN01027734.1 1134 990 - 105 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 991 1134 105 - . gene_id 1 ; sequence CbirOr325PI(F) ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 991 1134 . - . LHQN01027734.1 exonerate:protein2genome:local exon 991 1134 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 991 1134 105 - . alignment_id 1 ; Query CbirOr325PI(F) ; Align 1135 165 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr326 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 166 -> 214 Target range: 1134 -> 990 167 : TyrPheLeuAspGlnGluLysTyrLeuTyrPheIleLeuLeuHisIleSerLeuAlaIleSe : 187 ||||||:!!|||:!!! !:!!|||! !|||!:!|||:!!|||||| !!!!! !.!!:!!! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLe 1134 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTT : 1074 188 : rIleAlaValAlaValLeuIleAlaIleGlyThrMetPheIleAlaTyrLeuGlnHisThrC : 208 !|||!.!|||!.!|||! ! !||| !! !|||! !:!!!:!.! :!!|||||||||| uIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrC 1073 : GATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTT : 1011 209 : ysGlyMetPheArgIleAla : 214 |||||:!!||| !:!:||| ysGlyLeuPheAlaValAla 1010 : GCGGACTGTTCGCCGTGGCC : 991 vulgar: CbirOr326 166 214 . LHQN01027734.1 1134 990 - 119 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 991 1134 119 - . gene_id 1 ; sequence CbirOr326 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 991 1134 . - . LHQN01027734.1 exonerate:protein2genome:local exon 991 1134 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 991 1134 119 - . alignment_id 1 ; Query CbirOr326 ; Align 1135 167 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr323PC Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 167 -> 214 Target range: 1131 -> 990 168 : PheLeuAspGlnGlnGlnPhePheTyrPheIleValSerAspPheAlaLeuIleAlaLeuIl : 188 |||:!!|||:!! !:!!!:!!:!|||!:!|||:!! ! !! .!!! !! !!.!||||| PheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeuIl 1131 : TTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTGAT : 1071 189 : eGlyMetThrThrPheIleAlaThrGluThrMetPheMetMetPheIleLeuHisAlaCysG : 209 |! !:!!..!..!!:! !||| !!!:|||! !:!|||:!:.!.:!:! !|||.!!|||| eValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysG 1070 : TGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCG : 1008 210 : lyLeuPheAlaIleAla : 214 |||||||||||:!:||| lyLeuPheAlaValAla 1007 : GACTGTTCGCCGTGGCC : 991 vulgar: CbirOr323PC 167 214 . LHQN01027734.1 1131 990 - 101 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 991 1131 101 - . gene_id 1 ; sequence CbirOr323PC ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 991 1131 . - . LHQN01027734.1 exonerate:protein2genome:local exon 991 1131 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 991 1131 101 - . alignment_id 1 ; Query CbirOr323PC ; Align 1132 168 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr314 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 130 -> 214 Target range: 1242 -> 990 131 : TyrIleAlaIlePheGlyPheIleMetMetGluValLeuProLysIleLeuAspIleValVa : 151 ||||||..! ||| !||||||...:!! ! ! ! !!::!!!::!!:!! ! TyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArgMetValAsnSerTyrLy 1242 : TACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGAATGGTGAACTCGTACAA : 1182 152 : lProLeuAsnGluSerArgProValHisLeuLeuGlyValAlaThrLeuPhePheAspGluG : 172 ! !!! !||| !!!!! ! !:!!! :!!:!!! ! !!.! !! !||| !!||||||! sThrGlnAsnIleThrProSerLeuProValValValProGlyTyrTyrPheValAspGluV 1181 : GACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAG : 1119 173 : luLysTyrPhePheProIleLeuGlyHisMetThrValAlaLeuLeuSerGluThrThrThr : 192 !:!!|||!:!!:! !|||:!! !||| ||| !.!!:!!|||! !! !..!..!..! alGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeuIleValValValVal 1118 : TAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTG : 1059 193 : IleIleAlaThrGluThrValGlyLeuIleLeuIleGlnHisLeuCysGlyLeuPheLysIl : 213 ! !||| !!!:||| ! !:!!:!!|||:!:|||||| !|||||||||||| :! TyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaVa 1058 : TACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGT : 996 214 : eAla : 214 :||| lAla 995 : GGCC : 991 vulgar: CbirOr314 130 214 . LHQN01027734.1 1242 990 - 102 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 991 1242 102 - . gene_id 1 ; sequence CbirOr314 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 991 1242 . - . LHQN01027734.1 exonerate:protein2genome:local exon 991 1242 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 991 1242 102 - . alignment_id 1 ; Query CbirOr314 ; Align 1243 131 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr317NTE Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 40 -> 88 Target range: 1134 -> 990 41 : TyrPheIleAspGlnGlnLysTyrPhePheLeuIleLeuPheHisIleSerPhePheValTr : 61 ||||||:!!|||:!! !:!!|||!:!!:!! !|||:!!.!!||| !!!!! ! |||! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLe 1134 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTT : 1074 62 : pCysGlyLeuAlaValValAlaAlaThrGluSerPheTyrMetSerLeuIleGlnHisAlaC : 82 ! !! !:!!!.!||| !..!||| !!!:!!! !|||||| !|||:!:||||||.!!| uIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrC 1073 : GATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTT : 1011 83 : ysGlyLeuPheGlnIleAla : 88 ||||||||||| :!:||| ysGlyLeuPheAlaValAla 1010 : GCGGACTGTTCGCCGTGGCC : 991 vulgar: CbirOr317NTE 40 88 . LHQN01027734.1 1134 990 - 109 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 991 1134 109 - . gene_id 1 ; sequence CbirOr317NTE ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 991 1134 . - . LHQN01027734.1 exonerate:protein2genome:local exon 991 1134 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 991 1134 109 - . alignment_id 1 ; Query CbirOr317NTE ; Align 1135 41 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr325PI(F) Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 134 -> 212 Target range: 5657 -> 5423 135 : PheTrpAlaIleGlnIleAlaIleProTyrLeuAspAsnValThrProIleAsnGlyCysAr : 155 ||| !..!:!:! !.!!!.! ||| !||||||! !:!!! !|||:!:|||! ! || PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5657 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5597 156 : gProHisArgLeuTyrIleAlaValGluTyrPheIleAspGlnGluLysTyrTyrTyrValI : 176 | !!!.. !!!! ! ! !!!.! ! ||||||:!!|||:!!!!:|||||| !|||:!!| gAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuI 5596 : AGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGA : 5534 177 : leLeuIleHisMetAsnAlaAlaLeuPheIleGlyIleLeuSerLeuMetAlaSerAlaThr : 196 ||:!! |||||| !! !!.!:!! ! !!: !|||! ! !!!! |||!!!! !.!! leValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 5533 : TCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 5474 197 : LeuMetLeuMetPhePheGlnHisAlaCysGlyMetPheLysIleAla : 212 ! :!! ! ! |||||||||||||||:!!!!. |||||| AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla 5473 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCA : 5424 vulgar: CbirOr325PI(F) 134 212 . LHQN01028732.1 5657 5423 - 112 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5424 5657 112 - . gene_id 1 ; sequence CbirOr325PI(F) ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5424 5657 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5424 5657 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5424 5657 112 - . alignment_id 1 ; Query CbirOr325PI(F) ; Align 5658 135 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr314 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 136 -> 219 Target range: 5657 -> 5408 137 : PheIleMetMetGluValLeuProLysIleLeuAspIleValValProLeuAsnGluSerAr : 157 |||!!: :!! ! !!:!! !! !||||||||||||:!!:!!||||||||||||!!!|| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5657 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5597 158 : gProValHisLeuLeuGlyValAlaThrLeuPhePheAspGluGluLysTyrPhePheProI : 178 | !! ! !!!:!! ! !||| !! !||| !!||||||!!:|||||| !!:! !| gAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuI 5596 : AGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGA : 5534 179 : leLeuGlyHisMetThrValAlaLeuLeuSerGluThrThrThrIleIleAlaThrGluThr : 198 ||:!!||||||||| !:!!!.!:!!:!!! ! ! !:!!..!.!! !||| !!!:.!! leValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 5533 : TCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 5474 199 : ValGlyLeuIleLeuIleGlnHisLeuCysGlyLeuPheLysIleAlaSerPheArgIleGl : 219 ! !:!! ! !:!:|||||| !|||||||||!!. ||||||.!!! !:!!|| AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***LeuValGl 5473 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCA : 5411 220 : n : 219 | n 5410 : A : 5409 vulgar: CbirOr314 136 219 . LHQN01028732.1 5657 5408 - 131 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5409 5657 131 - . gene_id 1 ; sequence CbirOr314 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5409 5657 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5409 5657 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5409 5657 131 - . alignment_id 1 ; Query CbirOr314 ; Align 5658 137 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr318 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 134 -> 234 Target range: 5660 -> 5366 135 : LeuPheValThrValValPheLeuTrpProAsnIleLeuAsnIleValMetProLeuAsnGl : 155 ||||||:!! !:!! !|||:!!! !||| ||||||:!!|||:!!|||||||||||||| LeuPheMetCysLeuProPheValSerPro---IleLeuAspIleLeuMetProLeuAsnGl 5660 : CTATTTATGTGCTTGCCGTTCGTGTCGCCG---ATTCTGGACATCCTTATGCCGTTGAACGA : 5603 156 : uSerArgArgSerArgGlnPheProAspAlaMetGluTyrPheIleAspGlnGluLysTyrI : 176 |!!! |||:!!||| !||| ! !! !! ! ||||||:!!|||:!!!!:|||||| uThr---ArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrA 5602 : GACG---CGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATC : 5543 177 : leTyrLeuLeuThrPheTyrSerValValIleAlaPheValThrIleSerValValLeuSer : 196 !||||||:!!..! :!!! ! !:!!:!!!.! ! :!! !||||||||| !!! !:!! rgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 5542 : GTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 5483 197 : IleGluAlaPheSerValLeuHisIleHisHisIleCysAlaMetPheGlnIleValSerTy : 217 !!!:||| !! !|||! ! !:!:!!.||| !|||!.!:!!!!. |||!.!.!!!! CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly** 5482 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTA : 5420 218 : rArgIleGluCysIleValLysLysAsnGluMetLysSerLeuAsnLeuVal : 234 !:!!:!! ! !:!!! !:!!|||! .!. ! ! !|||!!!||| *LeuValGlnGlyGlnLeuMetGluAsnGlyPheLeuTyrArgAsnPheVal 5419 : ATTAGTTCAAGGACAATTAATGGAAAATGGTTTTCTTTATAGAAATTTCGTT : 5367 vulgar: CbirOr318 134 234 . LHQN01028732.1 5660 5366 - 118 M 10 30 G 1 0 M 11 33 G 1 0 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5367 5660 118 - . gene_id 1 ; sequence CbirOr318 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5367 5660 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5367 5660 . - . insertions 0 ; deletions 2 LHQN01028732.1 exonerate:protein2genome:local similarity 5367 5660 118 - . alignment_id 1 ; Query CbirOr318 ; Align 5661 135 30 ; Align 5631 146 33 ; Align 5598 158 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr313PI Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 74 -> 185 Target range: 5723 -> 5390 75 : IleValLysTyrValThrPheTyrPheIleThrGluAsnAlaLeuIleTyrMetCysLeuPh : 95 :!!! !:::! !:!!:!!|||! !|||! !|||!!.!.!! !|||! :!:||| ! LeuGluArgSerLeuSerPheCysPheThrPheGluLysValHisIleSerLeuCysAlaAl 5723 : TTAGAACGTTCTCTGTCATTCTGTTTCACGTTTGAAAAAGTGCATATATCGTTATGCGCCGC : 5663 96 : eIleIleIleCysIleGlnTyrValProCysIleLeuAspValValMetProLeuAsnAsnS : 116 !:!!.!!!!:|||:!:! !!:!||| !! |||||||||:!!:!!||||||||||||.!.! aLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluT 5662 : TCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGA : 5600 117 : erArgArgValAlaLeuLeuPheGlnValGluTyrLeuValAsnHisGluGluTyrTyrHis : 136 !!||| ! ! !!!!:!!!:!! !!.! ! |||!!!|||:!!.!.!!::!!||| !:!! hrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyr 5599 : CGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTAC : 5540 137 : ValIleGlnLeuHisLeuHisIleGlyLeuLeuValAlaAlaThrThrValLeuAlaThrGl : 157 :!!||| ! !|||:!!:!!:!!! !:!!:!!:!! ! !:!!..! !!! !||| !!! LeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAs 5539 : TTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGA : 5477 158 : uSerPheCysLeuThrLeuSerIleHisAlaPheAlaMetPheLysIleAlaSerTyrArgM : 178 ::!! !! !:!! ! ! ! !||||||! !!.!:!!!!. ||||||.!!!! !: pAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***LeuV 5476 : TGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAG : 5414 179 : etGlnArgIleIleAspLysAsn : 185 !:||| !! !:!! :!!||| alGlnGlyGlnLeuMetGluAsn 5413 : TTCAAGGACAATTAATGGAAAAT : 5391 vulgar: CbirOr313PI 74 185 . LHQN01028732.1 5723 5390 - 125 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5391 5723 125 - . gene_id 1 ; sequence CbirOr313PI ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5391 5723 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5391 5723 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5391 5723 125 - . alignment_id 1 ; Query CbirOr313PI ; Align 5724 75 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr322 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 136 -> 213 Target range: 5657 -> 5426 137 : PheIleLeuThrMetPheValProAspValLeuAspIleIleThrProLeuAspGluProAr : 157 |||!!:! ! ! !|||||| !! :!!|||||||||:!!! !||||||:!!||| !!|| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5657 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5597 158 : gProArgGlnLeuProValGlnIleGluPhePhePheAspGlnAspArgTyrPheTyrLeuP : 178 | !!||| !!!! ! !! ! ! ! !:!||| !!|||:!!|||!:!||| !||||||. gAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuI 5596 : AGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGA : 5534 179 : heSerPheIlePheIleIleValAlaPheLeuGlyMetThrValLeuMetAlaThrGluAsn : 198 !! ! !.!. !:!!|||!.! ! :!! !!!::!!|||!!! ||| !!!: ! leValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 5533 : TCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 5474 199 : MetTyrMetLeuPheThrGlnHisAlaCysGlyLeuPheLysLeu : 213 ! |||:!!! ! !..!||||||||||||||||||!!. :!! AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 5473 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 5427 vulgar: CbirOr322 136 213 . LHQN01028732.1 5657 5426 - 126 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5427 5657 126 - . gene_id 1 ; sequence CbirOr322 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5427 5657 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5427 5657 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5427 5657 126 - . alignment_id 1 ; Query CbirOr322 ; Align 5658 137 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr316 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 147 -> 224 Target range: 5627 -> 5396 148 : LeuAspPheThrThrAlaAlaAsnGluSerArgIleArgGluPheProAlaLeuIleGluCy : 168 ||||||.!! !! ! !! !||||||!!!||| !||| !||| ! !! ! ! ! ! LeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTy 5627 : CTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTA : 5567 169 : sPheIleAspHisGlnLysTyrPheTyrProIleLeuSerTyrMetPheLeuValIleValC : 189 !|||:!!|||.!..!.|||||| !||| !|||:!!.!!:!!|||!:!||||||:!:||| rPheValAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValM 5566 : TTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAA : 5504 190 : ysGlyGlnThrThrMetIleAlaThrGluThrLeuTyrMetThrTyrThrGlnHisAlaCys : 209 ! :!!..!.!. !||| !!!:.!! !|||:!! ! !..!|||||||||||| etLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCys 5503 : TGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGC : 5444 210 : GlyLeuPheGluIleAlaAsnCysArgIleGluGlnAlaLeuLeu : 224 ||||||!!.! ||||||...! !:!!:!! ! !|||:!! GlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMet 5443 : GGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATG : 5397 vulgar: CbirOr316 147 224 . LHQN01028732.1 5627 5396 - 119 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5397 5627 119 - . gene_id 1 ; sequence CbirOr316 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5397 5627 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5397 5627 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5397 5627 119 - . alignment_id 1 ; Query CbirOr316 ; Align 5628 148 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr317NTE Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 2 -> 88 Target range: 5678 -> 5423 3 : IleHisLeuSerAlaPheGlyPheValLeuIleTyrLeuValSerThrPheLeuSerAspTh : 23 ||| |||!!!||| ! !|||:!!! !:!: !!!|||||| !!.!!||| |||! IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeu---AspIl 5678 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTG---GACAT : 5621 24 : rAlaValAspValAsnGluSerAsnIleArgAsnLeuProGlyLeuThrGluTyrPheIleA : 44 ! !:!! :!!||||||!!!... !||| !!! ! !! !.!! ! ||||||:!!| eLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValA 5620 : CCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCG : 5558 45 : spGlnGlnLysTyrPhePheLeuIleLeuPheHisIleSerPhePheValTrpCysGlyLeu : 64 ||:!!.!.|||||| !!:!||||||:!! |||!!:! !.!! ! ||| !:!! spGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIle 5557 : ACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATC : 5498 65 : AlaValValAlaAlaThrGluSerPheTyrMetSerLeuIleGlnHisAlaCysGlyLeuPh : 85 :!!||| !!..!||| !!!::!! !|||:!!! ! !:!:||||||||||||||||||!! SerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLe 5497 : TCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTT : 5435 86 : eGlnIleAla : 88 . |||||| uAlaIleAla 5434 : GGCCATTGCA : 5424 vulgar: CbirOr317NTE 2 88 . LHQN01028732.1 5678 5423 - 114 M 18 54 G 1 0 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5424 5678 114 - . gene_id 1 ; sequence CbirOr317NTE ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5424 5678 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5424 5678 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5424 5678 114 - . alignment_id 1 ; Query CbirOr317NTE ; Align 5679 3 54 ; Align 5625 22 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr333CTE Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 136 -> 213 Target range: 472 -> 703 137 : PheIleIleAlaGlnThrTrpIleAspIlePheAspValValLeuGlnIleAsnLysSerArgS : 158 |||:!!.!! !|||! ! .!.|||!!.! !:!!:!!! !! :!!!.!:!!! !!.!! PheValPheLeuGlnIleLeuProGlnIleLeuGlyIleIleSerProLeuThrGluIleAsnT 473 : TTCGTTTTCTTGCAAATTCTCCCGCAAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATA : 536 159 : erGlnSerLeuLeuIleMetThrGluTyrPheValAspGlnGluLysTyrTyrTyrPheMetLe : 179 !!.!.!.!||||||:!! |||||||||||||||||| ! :!! ! ||| !|||.!.!!: hrAsnLysLeuLeuValArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleTh 537 : CTAACAAATTACTCGTTCGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCAC : 599 180 : uLeuHisLeuAsnIleThrValSerIleAlaValPheIlePheValAlaIleGlyThrMetPhe : 200 !:!!||| !!.!|||.!!:!!! ! !::!||| !!!: :!!::!! !! !! ::: rIleHisAlaThrIleAlaIleMetCysSerValThrMetGlnIleSerSerAspIleLeuAsn 600 : GATCCACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaat : 662 201 : IleThrPhePheGlnTyrIleTyrGlyLeuPheLysIle : 213 |||.....!:!!||| !|||:!!|||:!!:!! AsnIlePheMetMetHisIleSerGlyMetPheGluVal 663 : aacatatttatGATGCACATCAGTGGAATGTTCGAGGTA : 703 vulgar: CbirOr333CTE 136 213 . LHQN01050134.1 472 703 + 108 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 473 703 108 + . gene_id 1 ; sequence CbirOr333CTE ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 473 703 . + . LHQN01050134.1 exonerate:protein2genome:local exon 473 703 . + . insertions 0 ; deletions 0 LHQN01050134.1 exonerate:protein2genome:local similarity 473 703 108 + . alignment_id 1 ; Query CbirOr333CTE ; Align 473 137 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr321PSE Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 124 -> 214 Target range: 433 -> 703 125 : GlnLeuPheAlaLeuIleAlaTyrIleValProLeuPheIleThrPheGlyHisPheValProA : 146 ...:!!.!! !!:!!.!!:!!!:!:!::!!! !||| !.!!..!||| !!!..!!:!!|||. SerIleIleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuProG 434 : TCCATTATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGC : 497 147 : spPheLeuAspIleValGluProLeuAsnGlnSerArgSerHisGlnMetIleIleLeuAlaGl : 167 !..!!|||! !|||:!!..!||||||!.!:!!! !!.!!!!:!!:!!:!::!!:!!! !.!!|| lnIleLeuGlyIleIleSerProLeuThrGluIleAsnThrAsnLysLeuLeuValArgThrGl 498 : AAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAACAAATTACTCGTTCGAACCGA : 560 168 : uTyrPheValAspAsnGluLysTyrPheTyrPheIleAlaLeuHisValAsnValCysPhePhe : 188 ||||||||||||| !!:!! ! |||.!!|||.!.|||.!!:!!|||!.!!.!:!!....!..!. uTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAlaThrIleAlaIleMet 561 : ATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCGACTATAGCAATAATG : 623 189 : IlePheGlnIleThrLeuMetSerThrThrSerThrTyrIleSerTyrIleGlnHisValCysG : 210 ! ! !! !! !! !!!:|||!:! !! ::::::..!|||:!! !!| CysSerValThrMetGlnIleSerSerAspIleLeuAsnAsnIlePheMetMetHisIleSerG 624 : TGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaataacatatttatGATGCACATCAGTG : 689 211 : lyMetPheGlnIle : 214 ||||||||:!!:!! lyMetPheGluVal 690 : GAATGTTCGAGGTA : 703 vulgar: CbirOr321PSE 124 214 . LHQN01050134.1 433 703 + 125 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 434 703 125 + . gene_id 1 ; sequence CbirOr321PSE ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 434 703 . + . LHQN01050134.1 exonerate:protein2genome:local exon 434 703 . + . insertions 0 ; deletions 0 LHQN01050134.1 exonerate:protein2genome:local similarity 434 703 125 + . alignment_id 1 ; Query CbirOr321PSE ; Align 434 125 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr320 Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 137 -> 213 Target range: 475 -> 703 138 : ValValIleGlnLeuAlaProAsnPheLeuAspPheValAlaProGlnAsnGluSerArgLeuH : 159 ||| !!:!:|||:!! !|||.!..!!|||! !.!.:!!:!!|||! !!.!|||! !!.! !: ValPheLeuGlnIleLeuProGlnIleLeuGlyIleIleSerProLeuThrGluIleAsnThrA 476 : GTTTTCTTGCAAATTCTCCCGCAAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTA : 539 160 : isHisIleProIleThrAlaGluTyrPheValAspGlnGlnLysCysTyrLeuProIleLeuLe : 180 !! ! :!!! !:!! !.!!||||||||||||||| ! :!! ! ! ! !! !! !||| !:! snLysLeuLeuValArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIl 540 : ACAAATTACTCGTTCGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGAT : 602 181 : uHisIleAspValIleAlaValValGlyPheThrThrValMetSerThrGluSerLeuPheAla : 201 !||| !:!! ! !:!! !.!! ! |||! ! !!!:|||!:!!!:! ||| eHisAlaThrIleAlaIleMetCysSerValThrMetGlnIleSerSerAspIleLeuAsnAsn 603 : CCACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaataac : 665 202 : AlaPheValGlnHisAlaIleGlyMetPheAlaIle : 213 |||::!..!||| !! !|||||||||! !:!! IlePheMetMetHisIleSerGlyMetPheGluVal 666 : atatttatGATGCACATCAGTGGAATGTTCGAGGTA : 703 vulgar: CbirOr320 137 213 . LHQN01050134.1 475 703 + 101 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 476 703 101 + . gene_id 1 ; sequence CbirOr320 ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 476 703 . + . LHQN01050134.1 exonerate:protein2genome:local exon 476 703 . + . insertions 0 ; deletions 0 LHQN01050134.1 exonerate:protein2genome:local similarity 476 703 101 + . alignment_id 1 ; Query CbirOr320 ; Align 476 138 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr318 Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 120 -> 215 Target range: 427 -> 706 121 : AspPheIleThrIleThrIleThrCysPheTyrLeuIleIleLeuPheValThrValValPheL : 142 |||||| !! !||| !!:!: !! |||! |||:!!:!! !|||||| !:!! !.!!| AspPheSerIleIleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleL 428 : GATTTTTCCATTATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTC : 491 143 : euTrpProAsnIleLeuAsnIleValMetProLeuAsnGluSerArgArgSerArgGlnPhePr : 163 || |||.!.||||||..!|||:!! ||||||!.!|||! !!.!! !!:!!:! !.!! eu---ProGlnIleLeuGlyIleIleSerProLeuThrGluIleAsnThrAsnLysLeuLeuVa 492 : TC---CCGCAAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAACAAATTACTCGT : 551 164 : oAspAlaMetGluTyrPheIleAspGlnGluLysTyrIleTyrLeuLeuThrPheTyrSerVal : 184 ! !! |||||||||:!!||| ! :!! ! ||||||||||||:!!|||.!!:!!:!!..! l---ArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAlaThr 552 : T---CGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCGACT : 611 185 : ValIleAlaPheValThrIleSerValValLeuSerIleGluAlaPheSerValLeuHisIleH : 206 :!! ! !.!. !!:!:!:!!!:!! !:!!|||! !!!: ...::: ::: ::: IleAlaIleMetCysSerValThrMetGlnIleSerSerAspIleLeuAsnAsnIlePheMetM 612 : ATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaataacatatttatGA : 677 207 : isHisIleCysAlaMetPheGlnIleVal : 215 |||||| !!!.!||||||:!!:!!:!! etHisIleSerGlyMetPheGluValIle 678 : TGCACATCAGTGGAATGTTCGAGGTAATT : 706 vulgar: CbirOr318 120 215 . LHQN01050134.1 427 706 + 122 M 22 66 G 1 0 M 20 60 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 428 706 122 + . gene_id 1 ; sequence CbirOr318 ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 428 706 . + . LHQN01050134.1 exonerate:protein2genome:local exon 428 706 . + . insertions 0 ; deletions 2 LHQN01050134.1 exonerate:protein2genome:local similarity 428 706 122 + . alignment_id 1 ; Query CbirOr318 ; Align 428 121 66 ; Align 494 144 60 ; Align 554 165 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr346PI Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 293 -> 338 Target range: 358648 -> 358783 294 : TyrSerValGlnTrpTyrThrAlaProValArgIleGlnLysLeuIleLeuPheLeuL : 313 |||||| ! !|||||||||||| !!|||! ! !|||||| !:!:|||!:!:!!: TyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuLeuTyrIleM 358649 : TACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGTTATACATCA : 358706 314 : euGluArgSerCysLysAsnTyrGlyValArgValGlyGlyLeuPheIleThrSerLe : 332 !!:!!!.!||| :!!:!!|||..! !! !:!!||||||||||||:!: !!|||! etGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheValProSerTy 358707 : TGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGTGCCGAGTTA : 358763 333 : uGluGlyPheAlaThrLeu : 338 !:!!||||||:!!|||:!! rGlnGlyPheSerThrVal 358764 : CCAAGGATTTTCTACGGTA : 358783 vulgar: CbirOr346PI 293 338 . KQ414693.1 358648 358783 + 119 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358649 358783 119 + . gene_id 1 ; sequence CbirOr346PI ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 358649 358783 . + . KQ414693.1 exonerate:protein2genome:local exon 358649 358783 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358649 358783 119 + . alignment_id 1 ; Query CbirOr346PI ; Align 358649 294 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr358 Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 159 -> 213 Target range: 357476 -> 357638 160 : ArgLeuTyrIleAspValGluTyrPheIleAspGlnGluLysTyrTyrTyrValIleL : 179 !.!||||||.!! !:!!!!:||||||:!!|||...|||||||||:::||||||! ! AsnLeuTyrPheThrIleAspTyrPheValAspAspGluLysTyrPheTyrValLysP 357477 : AATCTATACTTCACCATAGACTACTTCGTCGACgacgaaaaatacttttacgTCAAGT : 357534 180 : euIleHisMetAsnAlaAlaLeuPheIleGlyIleLeuThrLeuLeuAlaThrGlyTh : 198 !!:!!|||:!! !! ! !!!!! !:!!|||! ! !..!:!!|||!.!:!!! !.. heLeuHisValTyrLeuTyrPheSerLeuGlySerThrValIleLeuGlySerGluVa 357535 : TCTTACATGTGTATCTATATTTTTCCCTCGGAAGTACAGTCATTCTAGGATCAGAAGT : 357591 199 : rLeuMetValMetPhePheGlnHisAlaCysGlyMetPheLysIle : 213 ! !! :!!|||||| !.!. !|||! !|||:!:!:!:!!:!! lThrThrIleMetPheAlaAsnPheAlaSerGlyLeuTyrGlnVal 357592 : AACAACTATTATGTTCGCTAATTTTGCGTCTGGGTTATATCAGGTA : 357638 vulgar: CbirOr358 159 213 . KQ414693.1 357476 357638 + 106 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 357477 357638 106 + . gene_id 1 ; sequence CbirOr358 ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 357477 357638 . + . KQ414693.1 exonerate:protein2genome:local exon 357477 357638 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 357477 357638 106 + . alignment_id 1 ; Query CbirOr358 ; Align 357477 160 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr351INT Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 119 -> 217 Target range: 358170 -> 358768 120 : ThrArgSerTyrThrAlaSerIleIleLeuPheGlnThrValSerSerGlyHisAsnV : 139 |||||| !! ! ! !!:!:!: :!! !|||! ! !! ! !! !! !|||: ThrArgArgIleCysLeuAsnValGlnValThrGlnIleLysMetProArgSerAsnL 358171 : ACACGACGCATTTGCTTAAACGTGCAGGTGACTCAAATAAAAATGCCACGAAGTAACT : 358228 140 : alGluGluPheValValHisPheSerCysLeuSerIleLeuLeuLeuTyrLeuPheLe : 158 !!:!! !.!.:!!:!!.!. ! ||| :!! ! ! !!!! !||||||||||| euGlnLeuLeuIleLeuGluValSerMetIleLeuAlaCysPheAlaTyrLeuPheLe 358229 : TGCAGTTACTGATCCTAGAAGTGTCTATGATTCTCGCGTGCTTCGCGTACTTGTTTCT : 358285 159 : uAlaAsnTyrAlaAlaGlnGluIleIleAspHisTyrAsnHisIlePheIleThr{Va : 177 |.!!|||:!! !!.!||| !|||!!:||| ! !::: ! :!!.!! ! !{!. uThrAsnHisMetGlyGlnThrIleMetAspSerSerSerLysLeuLeuGlyGlu{Al 358286 : GACCAATCACATGGGACAAACGATCATGGACAGTAGCTCGAAACTTCTTGGCGAA{GC : 358342 178 : } >>>> Target Intron 1 >>>> {l}TyrSerIleGlnTrpTyrAlaAlaS : 186 } 304 bp {!}|||||| ! !||||||.!!|||| }++ ++{a}TyrSerSerGlyTrpTyrThrAlaS 358343 : }gt.........................ag{G}TACAGCTCTGGATGGTATACTGCAT : 358673 187 : erIleCysIleGlnLysMetIleLeuPheLeuLeuGlnArgGlyAlaLysAlaPheAs : 205 ||:!: ! !||||||! :!:|||!:!:!!:!!|||!.!..! !:!!! !!:!|| erValProAlaGlnLysThrLeuLeuTyrIleMetGlnHisSerIleGlnAspTyrAs 358674 : CAGTGCCTGCACAAAAAACACTGTTATACATCATGCAACACTCCATACAAGATTACAA : 358730 206 : nLeuAsnLeuGlyGlyLeuPheIleGlySerLeuGlu : 217 |!!!::::!!||||||||||||:!: !|||! !:!! nPheSerIleGlyGlyLeuPheValProSerTyrGln 358731 : CTTCTCGATCGGAGGTCTGTTTGTGCCGAGTTACCAA : 358768 vulgar: CbirOr351INT 119 217 . KQ414693.1 358170 358768 + 135 M 57 171 S 0 2 5 0 2 I 0 300 3 0 2 S 1 1 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358171 358768 135 + . gene_id 1 ; sequence CbirOr351INT ; gene_orientation + KQ414693.1 exonerate:protein2genome:local cds 358171 358343 . + . KQ414693.1 exonerate:protein2genome:local exon 358171 358343 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local splice5 358344 358345 . + . intron_id 1 ; splice_site "GT" KQ414693.1 exonerate:protein2genome:local intron 358344 358647 . + . intron_id 1 KQ414693.1 exonerate:protein2genome:local splice3 358646 358647 . + . intron_id 0 ; splice_site "AG" KQ414693.1 exonerate:protein2genome:local cds 358648 358768 . + . KQ414693.1 exonerate:protein2genome:local exon 358648 358768 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358171 358768 135 + . alignment_id 1 ; Query CbirOr351INT ; Align 358171 120 171 ; Align 358649 178 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr356 Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 334 -> 402 Target range: 358648 -> 358852 335 : TyrAsnValGlnTrpTyrLeuAlaProLeuHisValGlnLysMetIleLeuPheLeuL : 354 |||!:! ! !|||||| !||| !!:!!! !!.!||||||! :!:|||!:!:!!: TyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuLeuTyrIleM 358649 : TACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGTTATACATCA : 358706 355 : euGlnArgSerThrArgThrPheThrLeuAsnValGlyGlyLeuPheIleGlySerLe : 373 !!|||!.!|||! !!:! !!:!!.!!!!::::!!||||||||||||:!: !|||! etGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheValProSerTy 358707 : TGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGTGCCGAGTTA : 358763 374 : uGluGlyAlaAlaThrLeuLeuSerThrSerIleSerTyrPheThrValLeuTyrSer : 392 !:!!||| !:!!|||:!! !..!:!!! !! !||| ::::::::::::... rGlnGlyPheSerThrValThrAspSerIleAsnSer***AsnSerLeuIlePheGlu 358764 : CCAAGGATTTTCTACGGTAACAGATTCTATCAATagttaaaattcattaatttttgaa : 358820 393 : ThrGlnCysLysIleHisLeuIleValTyr : 402 ...... :::::: :::...:::||| AsnSerLeuArgValLysIlePheIleTyr 358821 : aattcattgagggttaagatttttatttac : 358852 vulgar: CbirOr356 334 402 . KQ414693.1 358648 358852 + 113 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358649 358852 113 + . gene_id 1 ; sequence CbirOr356 ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 358649 358852 . + . KQ414693.1 exonerate:protein2genome:local exon 358649 358852 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358649 358852 113 + . alignment_id 1 ; Query CbirOr356 ; Align 358649 335 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr342CTE Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 160 -> 214 Target range: 357476 -> 357638 161 : SerLeuHisIleMetThrGluTyrPheIleAspGlnGluLysTyrPheTyrLeuLeuV : 180 !:!|||:!!.!!! ! !!!:||||||:!!|||...|||||||||||||||:!! ! AsnLeuTyrPheThrIleAspTyrPheValAspAspGluLysTyrPheTyrValLysP 357477 : AATCTATACTTCACCATAGACTACTTCGTCGACgacgaaaaatacttttacgTCAAGT : 357534 181 : alMetHisLysGluValAlaSerCysIleGlyThrThrAlaIleIleAlaThrGlyTh : 199 !!:!:||| ! ! :!! !! !! !:!!|||!:!|||!.!|||:!!!.!:!!! !.. heLeuHisValTyrLeuTyrPheSerLeuGlySerThrValIleLeuGlySerGluVa 357535 : TCTTACATGTGTATCTATATTTTTCCCTCGGAAGTACAGTCATTCTAGGATCAGAAGT : 357591 200 : rMetAsnMetIlePheLeuGlnHisAlaCysGlyMetPheMetIle : 214 !! !.!!!:!!:||| !.!. !|||! !|||:!:!:!..!:!! lThrThrIleMetPheAlaAsnPheAlaSerGlyLeuTyrGlnVal 357592 : AACAACTATTATGTTCGCTAATTTTGCGTCTGGGTTATATCAGGTA : 357638 vulgar: CbirOr342CTE 160 214 . KQ414693.1 357476 357638 + 100 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 357477 357638 100 + . gene_id 1 ; sequence CbirOr342CTE ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 357477 357638 . + . KQ414693.1 exonerate:protein2genome:local exon 357477 357638 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 357477 357638 100 + . alignment_id 1 ; Query CbirOr342CTE ; Align 357477 161 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr359 Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 157 -> 211 Target range: 357476 -> 357638 158 : ArgLeuTyrIleAlaValGluTyrPheIleAspGlnGluLysTyrTyrTyrValIleL : 177 !.!||||||.!!.!!:!!!!:||||||:!!|||...|||||||||:::||||||! ! AsnLeuTyrPheThrIleAspTyrPheValAspAspGluLysTyrPheTyrValLysP 357477 : AATCTATACTTCACCATAGACTACTTCGTCGACgacgaaaaatacttttacgTCAAGT : 357534 178 : euIleHisMetAsnValAlaLeuPheIleGlyThrLeuThrValIleAlaThrGlyTh : 196 !!:!!|||:!! !!:!! !!!!! !:!!|||!:! !..!:!!:!!!.!:!!! !.. heLeuHisValTyrLeuTyrPheSerLeuGlySerThrValIleLeuGlySerGluVa 357535 : TCTTACATGTGTATCTATATTTTTCCCTCGGAAGTACAGTCATTCTAGGATCAGAAGT : 357591 197 : rLeuMetLeuMetPhePheGlnHisAlaCysGlyMetPheLysIle : 211 ! !! :!!|||||| !.!. !|||! !|||:!:!:!:!!:!! lThrThrIleMetPheAlaAsnPheAlaSerGlyLeuTyrGlnVal 357592 : AACAACTATTATGTTCGCTAATTTTGCGTCTGGGTTATATCAGGTA : 357638 vulgar: CbirOr359 157 211 . KQ414693.1 357476 357638 + 110 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 357477 357638 110 + . gene_id 1 ; sequence CbirOr359 ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 357477 357638 . + . KQ414693.1 exonerate:protein2genome:local exon 357477 357638 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 357477 357638 110 + . alignment_id 1 ; Query CbirOr359 ; Align 357477 158 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr342CTE Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 150 -> 214 Target range: 887579 -> 887768 151 : LeuProAlaAsnLysSerGlyProHisProSerLeuHisIleMetThrGluTyrPheI : 170 ||| ! !|||::!!!!! !|||...! !!!!|||:!! ..!|||||| !| LeuAsnLysAsnArgThrGluProArgGlnThrLeuTyr---ProValGluTyrHisI 887580 : TTGAATAAAAACCGGACCGAACCCAGACAGACTCTATAC---CCAGTGGAGTACCACA : 887634 171 : leAspGlnGluLysTyrPheTyrLeuLeuValMetHisLysGluValAlaSerCysIl : 189 |||||...||||||||||||||||||:!!..! ||| ! !.!:!!!!! :! leAspSerGluLysTyrPheTyrLeuIleThrAlaHisCysTyrAlaSerThrValLe 887635 : TCgacagtgaaaaatatttttacctgATTACAGCTCATTGTTACGCCTCGACAGTACT : 887691 190 : eGlyThrThrAlaIleIleAlaThrGlyThrMetAsnMetIlePheLeuGlnHisAla : 208 ! ! ! ! !! !:!!!.! !! !|||||| !!!!::!!.!.:!!||||||!.! uLeuLeuLeuGlnThrValValHisAspThrMetTyrIleValLeuValGlnHisGly 887692 : TCTTCTGCTTCAAACTGTCGTACACGACACAATGTACATTGTTCTGGTCCAACATGGC : 887748 209 : CysGlyMetPheMetIle : 214 |||!.!:!:||| :!! CysAlaLeuPheAlaVal 887749 : TGCGCTTTATTCGCAGTT : 887768 vulgar: CbirOr342CTE 150 214 . KQ414735.1 887579 887768 + 100 M 13 39 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 887580 887768 100 + . gene_id 1 ; sequence CbirOr342CTE ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 887580 887768 . + . KQ414735.1 exonerate:protein2genome:local exon 887580 887768 . + . insertions 0 ; deletions 1 KQ414735.1 exonerate:protein2genome:local similarity 887580 887768 100 + . alignment_id 1 ; Query CbirOr342CTE ; Align 887580 151 39 ; Align 887619 165 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr358 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 134 -> 214 Target range: 24419 -> 24179 135 : LeuAlaPheTrpAlaValGlnIleValIleProTyrLeuAspAsnValAlaProIleAsn : 154 :!! !||| |||||| !|||..! !! ! !|||||| !:!!:!!|||! !||| ValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 24419 : GTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAAC : 24362 155 : GlyCysArgProArgArgLeuTyrIleAspValGluTyrPheIleAspGlnGluLysTyr : 174 ! !! ||| ! ! !!!!! ! ! !!.!.!.||| !:!!|||:!!|||:!!:!! GluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHis 24361 : GAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCAT : 24302 175 : TyrTyrValIleLeuIleHisMetAsnAlaAlaLeuPheIleGlyIleLeuThrLeuLeu : 194 |||||| !:!::!! !|||||| !:!!!.!:!! !:!!! !.!!!!!..!! !:!! TyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIle 24301 : TACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATC : 24242 195 : AlaThrGlyThrLeuMetValMetPhePheGlnHisAlaCysGlyMetPheLysIleAla : 214 :!! !! !|||:!! :!!! .!! ! |||||||||||||||:!:!!.!!.:!!:!! SerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSer 24241 : TCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCT : 24182 vulgar: CbirOr358 134 214 . KQ414772.1 24419 24179 - 110 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24180 24419 110 - . gene_id 1 ; sequence CbirOr358 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24180 24419 . - . KQ414772.1 exonerate:protein2genome:local exon 24180 24419 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 24180 24419 110 - . alignment_id 1 ; Query CbirOr358 ; Align 24420 135 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr358 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 134 -> 214 Target range: 38012 -> 37772 135 : LeuAlaPheTrpAlaValGlnIleValIleProTyrLeuAspAsnValAlaProIleAsn : 154 :!! !||| :!!||| !|||..! !! ! !|||||| !:!!:!!|||! !||| ValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 38012 : GTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAAC : 37955 155 : GlyCysArgProArgArgLeuTyrIleAspValGluTyrPheIleAspGlnGluLysTyr : 174 ! !! ||| ! ! !!!! ! ! !!.! ! ||| !:!!|||:!!|||:!!:!! GluSerArgGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHis 37954 : GAATCGCGTGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAGGAACAT : 37895 175 : TyrTyrValIleLeuIleHisMetAsnAlaAlaLeuPheIleGlyIleLeuThrLeuLeu : 194 ||||||:!!:!::!! !|||||| !..!!.!:!! !:!!! !.!!!!!..!! !:!! TyrTyrIleLeuMetGlyHisMetLeuCysValIleThrValValPhePheValTyrIle 37894 : TATTACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTGTACATC : 37835 195 : AlaThrGlyThrLeuMetValMetPhePheGlnHisAlaCysGlyMetPheLysIleAla : 214 :!! !! !|||:!! :!!! .!! !!|||||||||||||||:!:.!.!!.:!!:!! SerCysAspThrIleTyrMetSerIleValGlnHisAlaCysGlyLeuLeuAsnValSer 37834 : TCCTGTGACACGATCTACATGAGCATCGTTCAACACGCGTGCGGATTACTGAACGTCTCT : 37775 vulgar: CbirOr358 134 214 . KQ414772.1 38012 37772 - 109 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37773 38012 109 - . gene_id 2 ; sequence CbirOr358 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37773 38012 . - . KQ414772.1 exonerate:protein2genome:local exon 37773 38012 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 37773 38012 109 - . alignment_id 2 ; Query CbirOr358 ; Align 38013 135 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr358 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 166 -> 214 Target range: 17949 -> 17805 167 : TyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnAlaAlaLeu : 186 ||||||:!!|||:!!! !:!!||||||||| !|||:!!:!!||| !....!.!!:!! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIle 17949 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATT : 17892 187 : PheIleGlyIleLeuThrLeuLeuAlaThrGlyThrLeuMetValMetPhePheGlnHis : 206 !!.|||! !:!::!!..!! !! !||| !! !||| ! :!!:!:.!. ! |||||| LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 17891 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 17832 207 : AlaCysGlyMetPheLysIleAla : 214 .!!||||||:!!||| :!:||| ThrCysGlyLeuPheAlaValAla 17831 : ACTTGCGGACTGTTCGCCGTGGCC : 17806 vulgar: CbirOr358 166 214 . KQ414772.1 17949 17805 - 108 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17806 17949 108 - . gene_id 3 ; sequence CbirOr358 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17806 17949 . - . KQ414772.1 exonerate:protein2genome:local exon 17806 17949 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17806 17949 108 - . alignment_id 3 ; Query CbirOr358 ; Align 17950 167 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr358 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 166 -> 214 Target range: 42619 -> 42475 167 : TyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnAlaAlaLeu : 186 ||| !:!!||||||!!:|||||||||||| !|||:!! !||||||!..:!!!.! ! TyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAlaHisMetThrSerGlyGly 42619 : TATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCTCACATGACATCTGGGGGC : 42562 187 : PheIleGlyIleLeuThrLeuLeuAlaThrGlyThrLeuMetValMetPhePheGlnHis : 206 !!.:!:! !.!!!!!|||!!!:!!:!! !! !|||:!! :!!! .!! ! |||||| LeuValValPhePheThrPheIleSerCysAspThrIleTyrMetAsnIleValGlnHis 42561 : TTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTACATGAATATCGTGCAACAC : 42502 207 : AlaCysGlyMetPheLysIleAla : 214 |||||||||:!!!!. !|||:!! AlaCysGlyLeuLeuLeuIleSer 42501 : GCGTGCGGATTGTTGTTGATTTCT : 42476 vulgar: CbirOr358 166 214 . KQ414772.1 42619 42475 - 107 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42476 42619 107 - . gene_id 4 ; sequence CbirOr358 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42476 42619 . - . KQ414772.1 exonerate:protein2genome:local exon 42476 42619 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42476 42619 107 - . alignment_id 4 ; Query CbirOr358 ; Align 42620 167 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr358 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 134 -> 214 Target range: 33655 -> 33415 135 : LeuAlaPheTrpAlaValGlnIleValIleProTyrLeuAspAsnValAlaProIleAsn : 154 :!! !||| ! :!!!.!! .!!:!! ! !!:!:!!||| !!.! ! !!! !||| IleMetPheSerSerAlaProPheIleProHisPheIleAspValAlaLeuSerLysAsn 33655 : ATCATGTTCAGCTCGGCGCCTTTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAAC : 33598 155 : GlyCysArgProArgArgLeuTyrIleAspValGluTyrPheIleAspGlnGluLysTyr : 174 ! !! ||| ! !!!!||| ! !!.! ! ||| !|||||||||!::|||||| GluSerArgLysLeuSerLeuMetTyrProAlaTyrTyrGlyIleAspGlnAspLysTyr 33597 : GAGTCACGAAAATTAAGTTTGATGTACCCTGCCTATTACGGCATTGACCAGGacaagtat : 33538 175 : TyrTyrValIleLeuIleHisMetAsnAlaAlaLeuPheIleGlyIleLeuThrLeuLeu : 194 |||||| :::::: !||||||! ::!||| ! ! !.!!!!!..!!!!:!! TyrTyrTyrLeuMetAlaHisMetMetSerAlaGlyAlaAlaValPhePheValPheMet 33537 : tattattatctaatgGCTCACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATG : 33478 195 : AlaThrGlyThrLeuMetValMetPhePheGlnHisAlaCysGlyMetPheLysIleAla : 214 :!! !! !|||:!! :!!! .!! !!|||||||||||||||:!!!!. |||:!! SerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuPheIleSer 33477 : TCCTGCGACACGATTTATATGAATATCGTTCAACACGCGTGCGGATTGTTGTTCATTTCC : 33418 vulgar: CbirOr358 134 214 . KQ414772.1 33655 33415 - 104 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33416 33655 104 - . gene_id 5 ; sequence CbirOr358 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33416 33655 . - . KQ414772.1 exonerate:protein2genome:local exon 33416 33655 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 33416 33655 104 - . alignment_id 5 ; Query CbirOr358 ; Align 33656 135 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr358 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 134 -> 214 Target range: 29598 -> 29358 135 : LeuAlaPheTrpAlaValGlnIleValIleProTyrLeuAspAsnValAlaProIleAsn : 154 :!! !||| :!!||| !|||..! !! ! !|||||| !:!!:!!|||! !||| ValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 29598 : GTTATATTCACCTCAGTGGCGATAACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAAC : 29541 155 : GlyCysArgProArgArgLeuTyrIleAspValGluTyrPheIleAspGlnGluLysTyr : 174 ! !! ||| ! ! !!!!! ! ! !!.! ! ||| !:!!|||:!!|||:!!:!! GluSerArgGlyValGlyPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHis 29540 : GAATCGCGCGGAGTGGGCTTCATTTATCCTGCATACTACGGTCTTGACGAAGAGGAGCAT : 29481 175 : TyrTyrValIleLeuIleHisMetAsnAlaAlaLeuPheIleGlyIleLeuThrLeuLeu : 194 |||||| !:!::!! !|||||| !:!!!.!:!! !:!!! !.!!!!!..!! !:!! TyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIle 29480 : TACTACTATCTGATGGGTCACATGCTTTCCGTGATAACCGTCGTGTTTTTCGTCTACATC : 29421 195 : AlaThrGlyThrLeuMetValMetPhePheGlnHisAlaCysGlyMetPheLysIleAla : 214 :!! !! !|||:!! :!!! !! ! |||||||||||||||:!:!!.!!.:!!:!! SerCysAspThrIleTyrMetAsnValValGlnHisAlaCysGlyLeuLeuAsnValSer 29420 : TCCTGTGACACGATCTATATGAATGTCGTGCAACACGCGTGTGGATTATTGAACGTCTCT : 29361 vulgar: CbirOr358 134 214 . KQ414772.1 29598 29358 - 104 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29359 29598 104 - . gene_id 6 ; sequence CbirOr358 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29359 29598 . - . KQ414772.1 exonerate:protein2genome:local exon 29359 29598 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 29359 29598 104 - . alignment_id 6 ; Query CbirOr358 ; Align 29599 135 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr358 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 136 -> 213 Target range: 20556 -> 20325 137 : PheTrpAlaValGlnIleValIleProTyrLeuAspAsnValAlaProIleAsnGlyCys : 156 |||! ..!|||! .!!!.! ! !||||||! ! !||||||:!:||| ! PheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsnLysThr 20556 : TTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAACAAAACG : 20499 157 : ArgProArgArgLeuTyrIleAspValGluTyrPheIleAspGlnGluLysTyrTyrTyr : 176 ||| !||| !!!! ! ! !.! ! |||!::!!:|||! |||:!!|||||| ArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMet 20498 : AGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATG : 20439 177 : ValIleLeuIleHisMetAsnAlaAlaLeuPheIleGlyIleLeuThrLeuLeuAlaThr : 196 :!!!!::!!||||||!!:! !!.!:!!.!!!!:! ! !:!!! !!!!! !||| ! IleMetIleIleHisIleMetPheValValIleMetValCysValIlePheCysAlaCys 20438 : ATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGTGCTTGC : 20379 197 : GlyThrLeuMetValMetPhePheGlnHisAlaCysGlyMetPheLysIle : 213 ! !! ! ! ||| ! ! |||||||||||||||:!:!!. :!! AspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaVal 20378 : GACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: CbirOr358 136 213 . KQ414772.1 20556 20325 - 101 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20556 101 - . gene_id 7 ; sequence CbirOr358 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20556 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20556 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20326 20556 101 - . alignment_id 7 ; Query CbirOr358 ; Align 20557 137 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr356 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 121 -> 215 Target range: 33694 -> 33415 122 : TyrThrAlaIlePheThrLeuLeuAlaIlePheIleAlaPheGlyLeuIleLeuTyrPro : 141 ::::::::: |||||| ! !!.!:!:||| ! !.!! !!!!! !! ! ||| PheSerSerAsnPheThrAlaAsnGlyValPheCysTyrIleMetPheSerSerAlaPro 33694 : ttttcttcaaatttcacagCAAACGGAGTGTTTTGCTACATCATGTTCAGCTCGGCGCCT : 33637 142 : PheSerProArgIleLeuAspIleLeuTrpProValAsnGluSerArgGlnArgProSer : 161 |||! !|||!.!.!!:!!|||:!! !! ! !! !|||||||||||| !:! !||| PheIleProHisPheIleAspValAlaLeuSerLysAsnGluSerArg---LysLeuSer 33636 : TTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAACGAGTCACGA---AAATTAAGT : 33580 162 : LeuLeuPheMetThrGluTyrPheValAspGlnGluArgTyrPheTyrLeuIlePheLeu : 181 |||:!!!:! .!! ! ||| !:!!||||||!:::::|||:::||| :::... ! LeuMetTyrProAlaTyrTyrGlyIleAspGlnAspLysTyrTyrTyrTyrLeuMetAla 33579 : TTGATGTACCCTGCCTATTACGGCATTGACCAGGacaagtattattattatctaatgGCT : 33520 182 : HisAlaAsnValAlaIleCysIleGlyGlyPheValMetLeuAlaThrGlyThrIleLeu : 201 ||| !! !||| ... ! ! !||||||.!.:!!:!! !! !||||||! ! HisMetMetSerAlaGlyAlaAlaValPhePheValPheMetSerCysAspThrIleTyr 33519 : CACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATGTCCTGCGACACGATTTAT : 33460 202 : IleThrTyrPheGlnHisAlaCysGlyMetPheArgIleAla : 215 !!:!.! ! !!|||||||||||||||:!!!!. !|||:!! MetAsnIleValGlnHisAlaCysGlyLeuLeuPheIleSer 33459 : ATGAATATCGTTCAACACGCGTGCGGATTGTTGTTCATTTCC : 33416 vulgar: CbirOr356 121 215 . KQ414772.1 33694 33415 - 128 M 36 108 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33416 33694 128 - . gene_id 1 ; sequence CbirOr356 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33416 33694 . - . KQ414772.1 exonerate:protein2genome:local exon 33416 33694 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 33416 33694 128 - . alignment_id 1 ; Query CbirOr356 ; Align 33695 122 108 ; Align 33587 159 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr356 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 124 -> 215 Target range: 42745 -> 42475 125 : IlePheThrLeuLeuAlaIlePheIleAlaPheGlyLeuIleLeuTyrProPheSerPro : 144 |||||||||:!! !!.!|||! ! ! ! !!!!|||! ! |||!:!! !||| IlePheThrValThrGlyIleCysCysPheThrMetPheIleSerAlaProTyrIlePro 42745 : attttcacagTAACTGGAATATGTTGCTTCACAATGTTTATCTCTGCGCCTTATATACCG : 42688 145 : ArgIleLeuAspIleLeuTrpProValAsnGluSerArgGlnArgProSerLeuLeuPhe : 164 !.!:!!! !|||:!!:!!! !! !|||||||||||| !:! !.!!!!!:!!!:! HisValTyrAspValMetLeuSerLysAsnGluSerArg---LysLeuGlyPheIleTyr 42687 : CATGTATATGATGTTATGTTATCGAAAAACGAGTCACGA---AAGTTGGGTTTCATTTAC : 42631 165 : MetThrGluTyrPheValAspGlnGluArgTyrPheTyrLeuIlePheLeuHisAlaAsn : 184 .!! ! ||| !|||||||||!!:!:!|||!:!|||! !|||.!. !||| !!.. ProAlaTyrTyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAlaHisMetThr 42630 : CCTGCCTATTATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCTCACATGACA : 42571 185 : ValAlaIleCysIleGlyGlyPheValMetLeuAlaThrGlyThrIleLeuIleThrTyr : 204 !!.! !! :!:! ! !|||..!.!.:!!:!! !! !||||||! !!!:!.! ! SerGlyGlyLeuValValPhePheThrPheIleSerCysAspThrIleTyrMetAsnIle 42570 : TCTGGGGGCTTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTACATGAATATC : 42511 205 : PheGlnHisAlaCysGlyMetPheArgIleAla : 215 ! |||||||||||||||:!!!!. !|||:!! ValGlnHisAlaCysGlyLeuLeuLeuIleSer 42510 : GTGCAACACGCGTGCGGATTGTTGTTGATTTCT : 42476 vulgar: CbirOr356 124 215 . KQ414772.1 42745 42475 - 124 M 33 99 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42476 42745 124 - . gene_id 2 ; sequence CbirOr356 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42476 42745 . - . KQ414772.1 exonerate:protein2genome:local exon 42476 42745 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 42476 42745 124 - . alignment_id 2 ; Query CbirOr356 ; Align 42746 125 99 ; Align 42647 159 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr356 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 125 -> 215 Target range: 38039 -> 37772 126 : PheThrLeuLeuAlaIlePheIleAlaPheGlyLeuIleLeuTyrProPheSerProArg : 145 ||||||:!! !!.!:!:||| ! ! !! !!!!! !! ! !!.!!!!!|||||| PheThrValAsnGlyLeuPheCysTyrValIlePheThrSerValAlaIleThrProArg 38039 : TTCACAGTAAACGGACTGTTTTGCTACGTTATATTCACCTCAGTGGCGATTACGCCTCGT : 37982 146 : IleLeuAspIleLeuTrpProValAsnGluSerArgGlnArgProSerLeuLeuPheMet : 165 :!!||||||:!!:!!! ||| !|||||||||||| !! !..!!!!:!!!:! ValLeuAspLeuIleSerProLysAsnGluSerArg---GlyValAspPheIleTyrPro 37981 : GTTCTCGACCTTATTTCACCGAAAAACGAATCGCGT---GGGGTTGACTTCATTTATCCT : 37925 166 : ThrGluTyrPheValAspGlnGluArgTyrPheTyrLeuIlePheLeuHisAlaAsnVal : 185 .!! ! ||| !:!!|||:!!|||..!:!!!:!|||:!!:!:.!. !||| ! ! ! AlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHisMetLeuCys 37924 : GCATACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCACATGCTCTGC : 37865 186 : AlaIleCysIleGlyGlyPheValMetLeuAlaThrGlyThrIleLeuIleThrTyrPhe : 205 !.!||| !:!!! ! !|||||| :!!:!! !! !||||||! !!!:!:! ! !! ValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMetSerIleVal 37864 : GTGATAACTGTAGTGTTTTTCGTGTACATCTCCTGTGACACGATCTACATGAGCATCGTT : 37805 206 : GlnHisAlaCysGlyMetPheArgIleAla : 215 |||||||||||||||:!:.!.!.!:!!:!! GlnHisAlaCysGlyLeuLeuAsnValSer 37804 : CAACACGCGTGCGGATTACTGAACGTCTCT : 37773 vulgar: CbirOr356 125 215 . KQ414772.1 38039 37772 - 124 M 32 96 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37773 38039 124 - . gene_id 3 ; sequence CbirOr356 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37773 38039 . - . KQ414772.1 exonerate:protein2genome:local exon 37773 38039 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 37773 38039 124 - . alignment_id 3 ; Query CbirOr356 ; Align 38040 126 96 ; Align 37944 159 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr356 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 121 -> 215 Target range: 29637 -> 29358 122 : TyrThrAlaIlePheThrLeuLeuAlaIlePheIleAlaPheGlyLeuIleLeuTyrPro : 141 ::::::::: |||||| ! !!.!|||||| ! ! !! !!!!! !! ! !! PheSerSerArgPheThrAlaAsnGlyIlePheCysTyrValIlePheThrSerValAla 29637 : ttttcttcacgttTCACAGCAAATGGAATCTTCTGCTACGTTATATTCACCTCAGTGGCG : 29580 142 : PheSerProArgIleLeuAspIleLeuTrpProValAsnGluSerArgGlnArgProSer : 161 .!.!!!||||||:!!||||||:!!:!!! !||| !|||||||||||| !! !.!! IleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArg---GlyValGly 29579 : ATAACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGC---GGAGTGGGC : 29523 162 : LeuLeuPheMetThrGluTyrPheValAspGlnGluArgTyrPheTyrLeuIlePheLeu : 181 !!!:!!!:! .!! ! ||| !:!!|||:!!|||..!:!!!:!|||! !:!:.!. ! PheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrTyrLeuMetGly 29522 : TTCATTTATCCTGCATACTACGGTCTTGACGAAGAGGAGCATTACTACTATCTGATGGGT : 29463 182 : HisAlaAsnValAlaIleCysIleGlyGlyPheValMetLeuAlaThrGlyThrIleLeu : 201 ||| ! ! !!.!||| !:!!! ! !|||||| :!!:!! !! !||||||! ! HisMetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThrIleTyr 29462 : CACATGCTTTCCGTGATAACCGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATCTAT : 29403 202 : IleThrTyrPheGlnHisAlaCysGlyMetPheArgIleAla : 215 !!:!.! ! ! |||||||||||||||:!:!!.!.!:!!:!! MetAsnValValGlnHisAlaCysGlyLeuLeuAsnValSer 29402 : ATGAATGTCGTGCAACACGCGTGTGGATTATTGAACGTCTCT : 29359 vulgar: CbirOr356 121 215 . KQ414772.1 29637 29358 - 121 M 36 108 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29359 29637 121 - . gene_id 4 ; sequence CbirOr356 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29359 29637 . - . KQ414772.1 exonerate:protein2genome:local exon 29359 29637 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 29359 29637 121 - . alignment_id 4 ; Query CbirOr356 ; Align 29638 122 108 ; Align 29530 159 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr356 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 141 -> 215 Target range: 24398 -> 24179 142 : PheSerProArgIleLeuAspIleLeuTrpProValAsnGluSerArgGlnArgProSer : 161 .!!!!!||||||:!!||||||:!!:!!! !||| !|||||||||||| !! !.!! IleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArg---GlyValGly 24398 : ATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGC---GGAGTGGGC : 24344 162 : LeuLeuPheMetThrGluTyrPheValAspGlnGluArgTyrPheTyrLeuIlePheLeu : 181 !!!:!!!:! .!!.!.||| !||||||:!!|||..!:!!!:!|||! !:!:.!. ! PheIleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyrTyrTyrLeuMetGly 24343 : TTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTACTACTATCTGATGGGT : 24284 182 : HisAlaAsnValAlaIleCysIleGlyGlyPheValMetLeuAlaThrGlyThrIleLeu : 201 ||| ! ! !!.!||| !:!!! ! !|||||| :!!:!! !! !||||||! ! HisMetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThrIleTyr 24283 : CACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATCTAC : 24224 202 : IleThrTyrPheGlnHisAlaCysGlyMetPheArgIleAla : 215 !!:!.! ! ! |||||||||||||||:!:!!.!.!:!!:!! MetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSer 24223 : ATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCT : 24180 vulgar: CbirOr356 141 215 . KQ414772.1 24398 24179 - 119 M 16 48 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24180 24398 119 - . gene_id 5 ; sequence CbirOr356 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24180 24398 . - . KQ414772.1 exonerate:protein2genome:local exon 24180 24398 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 24180 24398 119 - . alignment_id 5 ; Query CbirOr356 ; Align 24399 142 48 ; Align 24351 159 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr356 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 136 -> 214 Target range: 20556 -> 20325 137 : LeuIleLeuTyrProPheSerProArgIleLeuAspIleLeuTrpProValAsnGluSer : 156 !!!:!!! ! ||||||:!!|||! !||||||||||||! ! !|||:!!|||:!!!!! PheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsnLysThr 20556 : TTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAACAAAACG : 20499 157 : ArgGlnArgProSerLeuLeuPheMetThrGluTyrPheValAspGlnGluArgTyrPhe : 176 |||:!!||| !!!!:!!!:! .!! ! |||!:::!!|||! |||!:!|||!:! ArgLysArg---ValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyr 20498 : AGAAAACGT---GTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTAC : 20442 177 : TyrLeuIlePheLeuHisAlaAsnValAlaIleCysIleGlyGlyPheValMetLeuAla : 196 :!!!!:.!.:!!||| !! !!!.!:!: !!!:! ! !! !!:!!.!.! !||| MetIleMetIleIleHisIleMetPheValValIleMetValCysValIlePheCysAla 20441 : ATGATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGTGCT : 20382 197 : ThrGlyThrIleLeuIleThrTyrPheGlnHisAlaCysGlyMetPheArgIle : 214 !! !! !! !! !:!: ! ! ! |||||||||||||||:!:!!. !:!! CysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaVal 20381 : TGCGACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: CbirOr356 136 214 . KQ414772.1 20556 20325 - 106 M 23 69 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20556 106 - . gene_id 6 ; sequence CbirOr356 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20556 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20556 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 20326 20556 106 - . alignment_id 6 ; Query CbirOr356 ; Align 20557 137 69 ; Align 20488 161 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr359 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 164 -> 212 Target range: 17949 -> 17805 165 : TyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnValAlaLeu : 184 ||||||:!!|||:!!! !:!!||||||||| !|||:!!:!!||| !.. !.!!:!! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIle 17949 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATT : 17892 185 : PheIleGlyThrLeuThrValIleAlaThrGlyThrLeuMetLeuMetPhePheGlnHis : 204 !!.|||! !..!:!!..! ! !||| !! !||| ! :!!:!:.!. ! |||||| LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 17891 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 17832 205 : AlaCysGlyMetPheLysIleAla : 212 .!!||||||:!!||| :!:||| ThrCysGlyLeuPheAlaValAla 17831 : ACTTGCGGACTGTTCGCCGTGGCC : 17806 vulgar: CbirOr359 164 212 . KQ414772.1 17949 17805 - 105 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17806 17949 105 - . gene_id 1 ; sequence CbirOr359 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17806 17949 . - . KQ414772.1 exonerate:protein2genome:local exon 17806 17949 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17806 17949 105 - . alignment_id 1 ; Query CbirOr359 ; Align 17950 165 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr359 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 164 -> 212 Target range: 42619 -> 42475 165 : TyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnValAlaLeu : 184 ||| !:!!||||||!!:|||||||||||| !|||:!! !||||||!.. !!.! ! TyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAlaHisMetThrSerGlyGly 42619 : TATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCTCACATGACATCTGGGGGC : 42562 185 : PheIleGlyThrLeuThrValIleAlaThrGlyThrLeuMetLeuMetPhePheGlnHis : 204 !!.:!:! ! !!!!||| !!|||:!! !! !|||:!! :!!! .!! ! |||||| LeuValValPhePheThrPheIleSerCysAspThrIleTyrMetAsnIleValGlnHis 42561 : TTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTACATGAATATCGTGCAACAC : 42502 205 : AlaCysGlyMetPheLysIleAla : 212 |||||||||:!!!!. !|||:!! AlaCysGlyLeuLeuLeuIleSer 42501 : GCGTGCGGATTGTTGTTGATTTCT : 42476 vulgar: CbirOr359 164 212 . KQ414772.1 42619 42475 - 104 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42476 42619 104 - . gene_id 2 ; sequence CbirOr359 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42476 42619 . - . KQ414772.1 exonerate:protein2genome:local exon 42476 42619 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42476 42619 104 - . alignment_id 2 ; Query CbirOr359 ; Align 42620 165 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr359 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 136 -> 212 Target range: 38000 -> 37772 137 : ThrIleGlnIleAlaIleProTyrLeuAspAspValThrProIleAsnGlyCysArgLeu : 156 :!!:!: !|||.!! !! ! !|||||| !:!!:!!|||! !|||! !! ||| ! SerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGly 38000 : TCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGG : 37943 157 : HisArgLeuTyrIleAlaValGluTyrPheIleAspGlnGluLysTyrTyrTyrValIle : 176 ! !!!! ! ! !!!.! ! ||| !:!!|||:!!|||:!!:!!||||||:!!:!: ValAspPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeu 37942 : GTTGACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAGGAACATTATTACATTCTG : 37883 177 : LeuIleHisMetAsnValAlaLeuPheIleGlyThrLeuThrValIleAlaThrGlyThr : 196 :!! !|||||| ! !!.!:!! !:!!! ! !!!!..! !|||:!! !! !||| MetGlyHisMetLeuCysValIleThrValValPhePheValTyrIleSerCysAspThr 37882 : ATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTGTACATCTCCTGTGACACG : 37823 197 : LeuMetLeuMetPhePheGlnHisAlaCysGlyMetPheLysIleAla : 212 :!! :!!! .!! !!|||||||||||||||:!:.!.!!.:!!:!! IleTyrMetSerIleValGlnHisAlaCysGlyLeuLeuAsnValSer 37822 : ATCTACATGAGCATCGTTCAACACGCGTGCGGATTACTGAACGTCTCT : 37773 vulgar: CbirOr359 136 212 . KQ414772.1 38000 37772 - 101 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37773 38000 101 - . gene_id 3 ; sequence CbirOr359 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37773 38000 . - . KQ414772.1 exonerate:protein2genome:local exon 37773 38000 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 37773 38000 101 - . alignment_id 3 ; Query CbirOr359 ; Align 38001 137 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr336 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 109 -> 216 Target range: 26318 -> 25991 110 : IleAlaIleTyrAspLysTyrAlaIleIleAlaLysArgIleThrIleGlyLeuThrIle : 129 |||::: ! |||!:!!.! !:!!! !::: !:!::!!.!! !!!!|||.!! IleSerLysMetLysLysPheVal***LeuGluArgSerLeuSerPheTyrPheThrPhe 26318 : atttcaaagatGAAGAAATTCGTGTAATTAGAACGTTCTCTGTCATTCTATTTCACGTTT : 26261 130 : ValAlaIleTyrAsnLeuAlaCysPheIleValMetLeuCysTrpProTyr<-><-><-> : 147 ! !.!!:!::!!! ! ! !||| ! !:!!.!.:!!|||! !|||!:! GluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerPro 26260 : GAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCG : 26201 148 : IleLeuAspIleIleMetProLysAsnGluThrTyrValGlnArgPheIleValHisMet : 166 ||||||||||||:!!|||||| !||||||||| !.! |||!!..!!|||:!! IleLeuAspIleLeuMetProLeuAsnGluThrArgAla---ArgLeuPheValTyrPro 26200 : ATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCA---CGGTTGTTCGTCTATCCA : 26144 167 : ThrLysAspPheAlaIleGlnGluLysTyrPheTyrLeuPheLeuLeuHisLeuTyrVal : 186 .!! ! !!|||!.! !:!!!!:|||||| !||||||.!!:!! !|||:!!|||:!! AlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeu 26143 : GCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTT : 26084 187 : AlaSerAlaValGlyGlyValSerPheLeuAlaThrGlyThrMetMetLeuSerCysLeu : 206 !.! !!.!:!! ! ! ! !|||! !||| !! !.!!! :!!! !..!:!! ValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaVal 26083 : GTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTG : 26024 207 : LysHisIleCysGlyIleLeuArgIleAla : 216 :!!||| !||||||:!:||| !|||||| GlnHisAlaCysGlyLeuLeuAlaIleAla 26023 : CAACACGCTTGCGGATTGTTGGCCATTGCA : 25992 vulgar: CbirOr336 109 216 . LHQN01017803.1 26318 25991 - 101 M 37 111 G 0 9 M 13 39 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25992 26318 101 - . gene_id 1 ; sequence CbirOr336 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25992 26318 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25992 26318 . - . insertions 9 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25992 26318 101 - . alignment_id 1 ; Query CbirOr336 ; Align 26319 110 111 ; Align 26199 147 39 ; Align 26160 161 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr356 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 140 -> 215 Target range: 26213 -> 25991 141 : ProPheSerProArgIleLeuAspIleLeuTrpProValAsnGluSerArgGlnArgPro : 160 |||||| ! !!! !||||||||||||||| !|||:!!||||||!!!||| !||| ProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArg--- 26213 : CCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGG--- : 26156 161 : SerLeuLeuPheMetThrGluTyrPheValAspGlnGluArgTyrPheTyrLeuIlePhe : 180 ! !!!!:!!!:! .!! ! ||||||||||||:!!!!:!:!||| !||||||||| ! LeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleVal 26155 : TTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTA : 26099 181 : LeuHisAlaAsnValAlaIleCysIleGlyGlyPheValMetLeuAlaThrGlyThrIle : 200 !||| ! !!:!!!.!:!: !!: ! !! !|||.!.! !||| !! !.!!! ! GlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsn 26098 : GGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAAT : 26039 201 : LeuIleThrTyrPheGlnHisAlaCysGlyMetPheArgIleAla : 215 ! !:!: ! ! ! |||||||||||||||:!!!!. !|||||| TyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla 26038 : TACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCA : 25992 vulgar: CbirOr356 140 215 . LHQN01017803.1 26213 25991 - 122 M 19 57 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25992 26213 122 - . gene_id 1 ; sequence CbirOr356 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25992 26213 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25992 26213 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25992 26213 122 - . alignment_id 1 ; Query CbirOr356 ; Align 26214 141 57 ; Align 26157 161 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr356 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 141 -> 215 Target range: 29592 -> 29373 142 : PheSerProArgIleLeuAspIleLeuTrpProValAsnGluSerArgGlnArgProSer : 161 .!!!!!||||||:!!||||||:!!:!!! !||| !|||||||||||| !! !.!! IleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArg---GlyValGly 29592 : ATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGC---GGAGTGGGC : 29538 162 : LeuLeuPheMetThrGluTyrPheValAspGlnGluArgTyrPheTyrLeuIlePheLeu : 181 !!!:!!!:! .!!.!.||| !||||||:!!|||..!:!!!:!|||! !:!:.!. ! PheIleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyrTyrTyrLeuMetGly 29537 : TTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTACTACTATCTGATGGGT : 29478 182 : HisAlaAsnValAlaIleCysIleGlyGlyPheValMetLeuAlaThrGlyThrIleLeu : 201 ||| ! ! !!.!||| !:!!! ! !|||||| :!!:!! !! !||||||! ! HisMetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThrIleTyr 29477 : CACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATCTAC : 29418 202 : IleThrTyrPheGlnHisAlaCysGlyMetPheArgIleAla : 215 !!:!.! ! ! |||||||||||||||:!:!!.!.!:!!:!! MetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSer 29417 : ATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCT : 29374 vulgar: CbirOr356 141 215 . LHQN01017803.1 29592 29373 - 119 M 16 48 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29374 29592 119 - . gene_id 2 ; sequence CbirOr356 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29374 29592 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29374 29592 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 29374 29592 119 - . alignment_id 2 ; Query CbirOr356 ; Align 29593 142 48 ; Align 29545 159 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr358 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 126 -> 232 Target range: 26255 -> 25937 127 : ValValPheValGlyIleThrLysLeuAlaPheTrpAlaValGlnIleValIleProTyr : 146 ..!||| !:!!..!:!! ! ! !||| !..!:!!! !.!!||| ||| ! ThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIle 26255 : ACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATT : 26198 147 : LeuAspAsnValAlaProIleAsnGlyCysArgProArgArgLeuTyrIleAspValGlu : 166 ||||||! !:!! !|||:!:|||! ! ||| !!||| !!!! ! ! !.! ! LeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyr 26197 : CTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTAC : 26138 167 : TyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnAlaAlaLeu : 186 ||||||:!!|||:!!!!:||||||:!!|||:!!|||:!! |||||| !! !!.!:!! TyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValVal 26137 : TATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTG : 26078 187 : PheIleGlyIleLeuThrLeuLeuAlaThrGlyThrLeuMetValMetPhePheGlnHis : 206 ! !!: !|||! !..!!!!! !||| !! !.!! ! ||| ! ! |||||| ValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHis 26077 : GTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACAC : 26018 207 : AlaCysGlyMetPheLysIleAlaCysTyrArgIleGluHisAlaIleGluIleAsnAla : 226 |||||||||:!!!!. |||||| ! !! !:!!:!! !:!! ! !|||!.! AlaCysGlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGluAsnGly 26017 : GCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAATGGT : 25958 227 : LeuLysAsnIleAsnPhe : 232 !!! !!! !|||||| PheLeuTyrArgAsnPhe 25957 : TTTCTTTATAGAAATTTC : 25938 vulgar: CbirOr358 126 232 . LHQN01017803.1 26255 25937 - 135 M 106 318 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25938 26255 135 - . gene_id 1 ; sequence CbirOr358 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25938 26255 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25938 26255 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25938 26255 135 - . alignment_id 1 ; Query CbirOr358 ; Align 26256 127 318 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr358 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 134 -> 214 Target range: 29613 -> 29373 135 : LeuAlaPheTrpAlaValGlnIleValIleProTyrLeuAspAsnValAlaProIleAsn : 154 :!! !||| |||||| !|||..! !! ! !|||||| !:!!:!!|||! !||| ValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 29613 : GTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAAC : 29556 155 : GlyCysArgProArgArgLeuTyrIleAspValGluTyrPheIleAspGlnGluLysTyr : 174 ! !! ||| ! ! !!!!! ! ! !!.!.!.||| !:!!|||:!!|||:!!:!! GluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHis 29555 : GAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCAT : 29496 175 : TyrTyrValIleLeuIleHisMetAsnAlaAlaLeuPheIleGlyIleLeuThrLeuLeu : 194 |||||| !:!::!! !|||||| !:!!!.!:!! !:!!! !.!!!!!..!! !:!! TyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIle 29495 : TACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATC : 29436 195 : AlaThrGlyThrLeuMetValMetPhePheGlnHisAlaCysGlyMetPheLysIleAla : 214 :!! !! !|||:!! :!!! .!! ! |||||||||||||||:!:!!.!!.:!!:!! SerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSer 29435 : TCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCT : 29376 vulgar: CbirOr358 134 214 . LHQN01017803.1 29613 29373 - 110 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29374 29613 110 - . gene_id 2 ; sequence CbirOr358 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29374 29613 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29374 29613 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 29374 29613 110 - . alignment_id 2 ; Query CbirOr358 ; Align 29614 135 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr358 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 166 -> 214 Target range: 18333 -> 18189 167 : TyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnAlaAlaLeu : 186 ||||||:!!|||:!!! !:!!||||||||| !|||:!!:!!||| !....!.!!:!! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIle 18333 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATT : 18276 187 : PheIleGlyIleLeuThrLeuLeuAlaThrGlyThrLeuMetValMetPhePheGlnHis : 206 !!.|||! !:!::!!..!! !! !||| !! !||| ! :!!:!:.!. ! |||||| LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 18275 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 18216 207 : AlaCysGlyMetPheLysIleAla : 214 .!!||||||:!!||| :!:||| ThrCysGlyLeuPheAlaValAla 18215 : ACTTGCGGACTGTTCGCCGTGGCC : 18190 vulgar: CbirOr358 166 214 . LHQN01017803.1 18333 18189 - 108 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18190 18333 108 - . gene_id 3 ; sequence CbirOr358 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18190 18333 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18190 18333 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18190 18333 108 - . alignment_id 3 ; Query CbirOr358 ; Align 18334 167 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr359 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 142 -> 212 Target range: 26201 -> 25991 143 : ProTyrLeuAspAspValThrProIleAsnGlyCysArgLeuHisArgLeuTyrIleAla : 162 ||| !|||||| !:!!! !|||:!:|||! ! ||| !!.. !!!! ! ! !! ProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrPro 26201 : CCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCA : 26144 163 : ValGluTyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnVal : 182 !.! ! ||||||:!!|||:!!!!:||||||:!!|||:!!|||:!! |||||| !!:!! AlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeu 26143 : GCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTT : 26084 183 : AlaLeuPheIleGlyThrLeuThrValIleAlaThrGlyThrLeuMetLeuMetPhePhe : 202 !.!:!! ! !!: !! !! !..! !! !||| !! !.!! ! :!! ! ! ValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaVal 26083 : GTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTG : 26024 203 : GlnHisAlaCysGlyMetPheLysIleAla : 212 |||||||||||||||:!!!!. |||||| GlnHisAlaCysGlyLeuLeuAlaIleAla 26023 : CAACACGCTTGCGGATTGTTGGCCATTGCA : 25992 vulgar: CbirOr359 142 212 . LHQN01017803.1 26201 25991 - 111 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25992 26201 111 - . gene_id 1 ; sequence CbirOr359 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25992 26201 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25992 26201 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25992 26201 111 - . alignment_id 1 ; Query CbirOr359 ; Align 26202 143 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr359 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 164 -> 212 Target range: 18333 -> 18189 165 : TyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnValAlaLeu : 184 ||||||:!!|||:!!! !:!!||||||||| !|||:!!:!!||| !.. !.!!:!! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIle 18333 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATT : 18276 185 : PheIleGlyThrLeuThrValIleAlaThrGlyThrLeuMetLeuMetPhePheGlnHis : 204 !!.|||! !..!:!!..! ! !||| !! !||| ! :!!:!:.!. ! |||||| LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 18275 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 18216 205 : AlaCysGlyMetPheLysIleAla : 212 .!!||||||:!!||| :!:||| ThrCysGlyLeuPheAlaValAla 18215 : ACTTGCGGACTGTTCGCCGTGGCC : 18190 vulgar: CbirOr359 164 212 . LHQN01017803.1 18333 18189 - 105 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18190 18333 105 - . gene_id 2 ; sequence CbirOr359 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18190 18333 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18190 18333 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18190 18333 105 - . alignment_id 2 ; Query CbirOr359 ; Align 18334 165 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr340 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 123 -> 214 Target range: 457144 -> 457417 124 : IleIleThrSerPheThrAlaCysSerValLeuIleLeuSerLeuLeuProLeuLeuP : 143 !!:|||||| !! !||| !|||.!!!.!|||:!!:!!!!! !|||! !|||!!!| MetIleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheP 457145 : ATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTC : 457202 144 : roCysIleLeuGlyThrPheLeuPheAlaAsnGluSerHisProLeuTyrAsnIleIl : 162 || :!!|||! !! ! ! :!! !|||||||||!.!|||! ! ! !:! roIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrLe 457203 : CGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCT : 457259 163 : eGluThrGluTyrPheValAspGluGluLysThrPheTyrLeuThrLeuLeuHisThr : 181 ! !.!!||||||||||||||| !:!!||| !.!.:!!! !! !:!! !|||! ! uThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIle 457260 : TACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATT : 457316 182 : TyrAlaSerLeuTyrIleGlyValThrAlaThrValGlyGlyGlyLeuValValLeuT : 201 !.!!!!!||| |||!.!!.!|||.!! !..!!.!..!! !! !:!!:!!:!!| IleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleT 457317 : ATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAA : 457376 202 : hrTyrIleIleHisIleCysGlyLeuPheSerIleAlaArg : 214 || !!:!!:!:|||:!!||||||||||||!.!:!!.!!||| hrAsnValLeuHisValCysGlyLeuPheLysLeuThrArg 457377 : CGAACGTACTGCACGTTTGTGGATTGTTCAAGCTTACTAGG : 457417 vulgar: CbirOr340 123 214 . KQ414815.1 457144 457417 + 153 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457145 457417 153 + . gene_id 1 ; sequence CbirOr340 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457145 457417 . + . KQ414815.1 exonerate:protein2genome:local exon 457145 457417 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457145 457417 153 + . alignment_id 1 ; Query CbirOr340 ; Align 457145 124 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr340 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 163 -> 221 Target range: 478638 -> 478812 164 : ThrGluTyrPheValAspGluGluLysThrPheTyrLeuThrLeuLeuHisThrTyrA : 183 ||||||||||||:!!||||||:::||| ||| ... ::: |||..!||| ThrGluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValTyrL 478639 : ACGGAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGTACC : 478696 184 : laSerLeuTyrIleGlyValThrAlaThrValGlyGlyGlyLeuValValLeuThrTy : 202 !|||||| !!: !!.!|||!.! !|||!.! !! !! ! !|||:!!! !!: euSerLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMetTr 478697 : TGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTATGTG : 478753 203 : rIleIleHisIleCysGlyLeuPheSerIleAlaArgTyrArgMetAsnGlnLeuLeu : 221 :!!::!:|||! ! !||||||!:!!:!||| !||||||!.!..!.!.::!|||:!! pMetValHisThrIleGlyLeuTyrAsnIleIleArgTyrAsnGlnGlnArgLeuIle 478754 : GATGGTGCATACTATCGGCTTGTATAATATCATAAGGTATAATCAGCAAAGATTGATC : 478810 vulgar: CbirOr340 163 221 . KQ414815.1 478638 478812 + 115 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478639 478812 115 + . gene_id 2 ; sequence CbirOr340 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478639 478812 . + . KQ414815.1 exonerate:protein2genome:local exon 478639 478812 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478639 478812 115 + . alignment_id 2 ; Query CbirOr340 ; Align 478639 164 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr340 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 124 -> 214 Target range: 481971 -> 482241 125 : IleThrSerPheThrAlaCysSerValLeuIleLeuSerLeuLeuProLeuLeuProC : 144 ||||||::!!!.! ! ! |||||||||||||||! !|||! !! !:!!! ! !! IleThrAlaLeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerP 481972 : attacagcGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTT : 482029 145 : ysIleLeuGlyThrPheLeuPheAlaAsnGluSerHisProLeuTyrAsnIleIleGl : 163 !:!!|||! !..!.!!:!! ! !||||||!!!!.! !!! ! ! ! !:!!.. heValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSe 482030 : TCGTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATC : 482086 164 : uThrGluTyrPheValAspGluGluLysThrPheTyrLeuThrLeuLeuHisThrTyr : 182 !! !|||||||||:!!|||:!!:!!||| !! !!!!! ! !!!!||| !!:: rMetGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrp 482087 : AATGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGG : 482143 183 : AlaSerLeuTyrIleGlyValThrAlaThrValGlyGlyGlyLeuValValLeuThrT : 202 !|||!!! !:!!! !!.!||| !! !|||||| !! ! !:!!:!!:!!! !! PheSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetT 482144 : TTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGT : 482203 203 : yrIleIleHisIleCysGlyLeuPheSerIleAlaArg : 214 :::!! !||| !....!!||||||!!!:!!!.!||| rpLeuGluHisAlaAlaSerLeuPheThrLeuValArg 482204 : GGCTTGAACACGCTGCAAGCTTGTTCACCCTTGTAAGG : 482241 vulgar: CbirOr340 124 214 . KQ414815.1 481971 482241 + 100 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481972 482241 100 + . gene_id 3 ; sequence CbirOr340 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481972 482241 . + . KQ414815.1 exonerate:protein2genome:local exon 481972 482241 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481972 482241 100 + . alignment_id 3 ; Query CbirOr340 ; Align 481972 125 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr356 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 124 -> 214 Target range: 475503 -> 475770 125 : IlePheThrLeuLeuAlaIlePheIleAlaPheGlyLeuIleLeuTyrProPheSerP : 144 ||| !|||:!!|||!.! ! ! ! !||| !:!!|||||| !! !|||||| IleValThrValLeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerS 475504 : attgtTACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGT : 475561 145 : roArgIleLeuAspIleLeuTrpProValAsnGluSerArgGlnArgProSerLeuLe : 163 !!!:!||||||||| !|||! |||:!!||||||||||||! !!! !||||||:: erLysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIl 475562 : CTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAt : 475618 164 : uPheMetThrGluTyrPheValAspGlnGluArgTyrPheTyrLeuIlePheLeuHis : 182 : |||||||||:::::::!!:!!!:!||||||||||||! ! ! :!!:!! e---ArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyr 475619 : a---cgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTAT : 475672 183 : AlaAsnValAlaIleCysIleGlyGlyPheValMetLeuAlaThrGlyThrIleLeuI : 202 !!.!|||.!!||| !:!: !||| !..! :!!||||||! !.!!|||!!!! GlnThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheT 475673 : CAGACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTA : 475732 203 : leThrTyrPheGlnHisAlaCysGlyMetPheArgIle : 214 !! !!::!!.||||||..! ...:::|||...||| hrMetTrpLeuGlnHisCysIleSerLeuPheGluIle 475733 : CCATGTGGTTGCAACATTGCATaagtttatttgaaatt : 475770 vulgar: CbirOr356 124 214 . KQ414815.1 475503 475770 + 150 M 39 117 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475504 475770 150 + . gene_id 1 ; sequence CbirOr356 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475504 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475504 475770 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 475504 475770 150 + . alignment_id 1 ; Query CbirOr356 ; Align 475504 125 117 ; Align 475621 165 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr356 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 119 -> 214 Target range: 457129 -> 457411 120 : LysArgTyrThrAlaIlePheThrLeuLeuAlaIlePheIleAlaPheGlyLeuIleL : 139 |||::: ::!!!:.!!|||:!!! !.!! !! ! !|||.!.! !:!!! ! LysLysLysProSerMetIleThrValSerThrTyrCysGlyAlaLeuValIleThrT 457130 : aaaaaaaaaccttcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCA : 457187 140 : euTyrProPheSerProArgIleLeuAspIleLeuTrpProValAsnGluSerArgGl : 158 !! ! !.!!! !|||! !:!!|||||||||:!! |||:!!||||||||||||! hrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgPr 457188 : CGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCC : 457244 159 : nArgProSerLeuLeuPheMetThrGluTyrPheValAspGlnGluArgTyrPheTyr : 177 !..!|||! !.!!! .!!|||||||||||||||..!:!!!:!|||.!.:!! o---CysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHis 457245 : C---TGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCAT : 457298 178 : LeuIlePheLeuHisAlaAsnValAlaIleCysIleGlyGlyPheValMetLeuAlaT : 197 ! !|||.!! !||| !! !..!..!:!! |||!.!!.! !..!:!: !|||! TyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaA 457299 : TATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTA : 457358 198 : hrGlyThrIleLeuIleThrTyrPheGlnHisAlaCysGlyMetPheArgIle : 214 .!! !:!!:!!||||||||| !! ! ! !|||!.!||||||:!!|||!:!:!! snGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457359 : ACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr356 119 214 . KQ414815.1 457129 457411 + 124 M 39 117 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457130 457411 124 + . gene_id 2 ; sequence CbirOr356 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457130 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457130 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457130 457411 124 + . alignment_id 2 ; Query CbirOr356 ; Align 457130 120 117 ; Align 457247 160 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr356 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 136 -> 214 Target range: 482004 -> 482235 137 : LeuIleLeuTyrProPheSerProArgIleLeuAspIleLeuTrpProValAsnGluS : 156 |||||||||! !! !.!.||| ! !:!!||||||:!!:!! |||:!!||||||! LeuIleLeuCysHisMetSerSerPheValLeuAspValIleValProLeuAsnGluT 482005 : CTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTCCTCTAAACGAGA : 482062 157 : erArgGlnArgProSerLeuLeuPheMetThrGluTyrPheValAspGlnGluArgTy : 175 !!||| !!.!! !! !! !:!!! ||| |||||||||:!!||||||:!!!:!|| hrArgThrHisGlnPheProValSerMet---GluTyrPheIleAspGlnGlnLysTy 482063 : CTCGTACGCACCAATTTCCAGTATCAATG---GAGTACTTCATTGACCAGCAGAAATA : 482116 176 : rPheTyrLeuIlePheLeuHisAlaAsnValAlaIleCysIleGlyGlyPheValMet : 194 |! !!!!||| !!!||| ! !!:!!.!! !:!!! !!.! :!!!!: rSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAlaThrIleIle 482117 : TTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCAACGATCATT : 482173 195 : LeuAlaThrGlyThrIleLeuIleThrTyrPheGlnHisAlaCysGlyMetPheArgI : 214 :!!!.!! !! !|||:!::!!:!!! !!::.!!:!!||||||....!!:!!|||! !: ValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerLeuPheThrL 482174 : GTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCTTGTTCACCC : 482233 215 : le : 214 !! eu 482234 : TT : 482235 vulgar: CbirOr356 136 214 . KQ414815.1 482004 482235 + 107 M 29 87 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482005 482235 107 + . gene_id 3 ; sequence CbirOr356 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482005 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 482005 482235 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 482005 482235 107 + . alignment_id 3 ; Query CbirOr356 ; Align 482005 137 87 ; Align 482092 167 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr356 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 119 -> 214 Target range: 464555 -> 464840 120 : LysArgTyrThrAlaIlePheThrLeuLeuAlaIlePheIleAlaPheGlyLeuIleL : 139 ..!|||||| ! !! !.!! !!:!!! ! !||| !:!! !.!. !:!! !| SerArgTyrPheLeuAsnIleProValCysPheIleProValIleLeuPheIleCysL 464556 : TCACGATACTTCCTGAATATTCCAGTGTGCTTCATTCCCGTTATACTGTTCATCTGTT : 464613 140 : euTyrProPheSerProArgIleLeuAspIleLeuTrpProValAsnGluSerArgGl : 158 || ! ! ! ! !||| !|||||||||:!::!! !|||:!!||||||||||||.. euLeuGluValLeuProAspIleLeuAspValValAlaProLeuAsnGluSerArgSe 464614 : TACTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATGAATCTCGTTC : 464670 159 : nArgProSerLeuLeuPheMetThrGluTyrPheValAspGlnGluArgTyrPheTyr : 177 .!.!! !! !|||:!! ! ! ! !:!.!!..!|||.....!! ! !!!:! ! rHisGlnTyrLeuIleThrAlaGluPhePheIleThrAspSerSerProAsnTyrIle 464671 : TCATCAATACTTAATTACCGCGGAATTTTTCATCACTGATAGTTCGCCGAATTATATC : 464727 178 : LeuIlePheLeuHisAlaAsnValAlaIleCysIleGlyGlyPheValMetLeuAlaT : 197 :!!! !! !:!! !.!!:!!:!!.!!:!! !!!:|||! ! ..!!!::!!|||: ValThrCysValGlyThrAspIleThrLeuIleMetGlyValThrThrIleIleAlaS 464728 : GTAACTTGTGTTGGTACGGATATTACTCTTATCATGGGAGTCACGACAATAATTGCCT : 464787 198 : hrGlyThrIleLeuIleThrTyrPheGlnHisAlaCysGlyMetPheArgIle : 214 !!! !|||.!! !.!! !! .!.|||||| !|||!.!||||||!:!||| erGluThrPheThrPheLeuLeuLeuGlnHisIleCysAlaMetPheLysIle 464788 : CCGAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAATGTTCAAAATC : 464840 vulgar: CbirOr356 119 214 . KQ414815.1 464555 464840 + 103 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464556 464840 103 + . gene_id 4 ; sequence CbirOr356 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464556 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464556 464840 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464556 464840 103 + . alignment_id 4 ; Query CbirOr356 ; Align 464556 120 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr335 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 160 -> 213 Target range: 485767 -> 485926 161 : IleHisIleAlaThrGluTyrPheIleAspGluGlnLysTyrPheTyrLeuIleValP : 180 |||! !||| !:!!|||:!!|||:!!|||:!!|||||||||||||||! !|||!.! IleProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaA 485768 : ATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAG : 485825 181 : heHisMetTyrThrAlaLeuPheIleGlyThrPheSerAlaIleAlaIleGluThrLe : 199 |||:!: ! ! !:!!.!!||||||.!!.!. ! !:!!::! ||| || laHisValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLe 485826 : CACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatatt : 485882 200 : uMetIleAlaTyrLeuGlnHisThrSerGlyMetPheArgIle : 213 |::::::||| :!!|||||||||!!!|||:!!!:!! !||| uIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIle 485883 : aattatggCGATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr335 160 213 . KQ414815.1 485767 485926 + 119 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485768 485926 119 + . gene_id 1 ; sequence CbirOr335 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485768 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485768 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485768 485926 119 + . alignment_id 1 ; Query CbirOr335 ; Align 485768 161 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr335 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 163 -> 216 Target range: 478635 -> 478794 164 : AlaThrGluTyrPheIleAspGluGlnLysTyrPheTyrLeuIleValPheHisMetT : 183 .!!|||||||||||||||||||||:::||||||||| ...|||::: |||:!!| ThrThrGluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValT 478636 : ACCACGGAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGT : 478693 184 : yrThrAlaLeuPheIleGlyThrPheSerAlaIleAlaIleGluThrLeuMetIleAl : 202 || !:!!|||.!.!!: !.!! ! ! !:!!|||! !|||:!!! !:!!||| yrLeuSerLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMe 478694 : ACCTGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTAT : 478750 203 : aTyrLeuGlnHisThrSerGlyMetPheArgIleAlaCysTyr : 216 !!:::!! !||||||! !|||:!!!:!!.!||| ! ! ||| tTrpMetValHisThrIleGlyLeuTyrAsnIleIleArgTyr 478751 : GTGGATGGTGCATACTATCGGCTTGTATAATATCATAAGGTAT : 478794 vulgar: CbirOr335 163 216 . KQ414815.1 478635 478794 + 117 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478636 478794 117 + . gene_id 2 ; sequence CbirOr335 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478636 478794 . + . KQ414815.1 exonerate:protein2genome:local exon 478636 478794 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478636 478794 117 + . alignment_id 2 ; Query CbirOr335 ; Align 478636 164 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr335 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 162 -> 213 Target range: 482082 -> 482235 163 : IleAlaThrGluTyrPheIleAspGluGlnLysTyrPheTyrLeuIleValPheHisM : 182 :!!:!!! !|||||||||||||||:!!|||||||||! !!!!|||..!||||||. ValSerMetGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisG 482083 : GTATCAATGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATC : 482140 183 : etTyrThrAlaLeuPheIleGlyThrPheSerAlaIleAlaIleGluThrLeuMetIl : 201 .!!:: !:!!!!!.!!:!!! !.!! ! ! !:!!!.!||||||||||||!!::! lnTrpPheSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleVa 482141 : AGTGGTTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGT : 482197 202 : eAlaTyrLeuGlnHisThrSerGlyMetPheArgIle : 213 ! !!::|||:!!|||.!!:!!.!!:!!|||! !:!! lMetTrpLeuGluHisAlaAlaSerLeuPheThrLeu 482198 : TATGTGGCTTGAACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: CbirOr335 162 213 . KQ414815.1 482082 482235 + 111 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482083 482235 111 + . gene_id 3 ; sequence CbirOr335 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482083 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 482083 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482083 482235 111 + . alignment_id 3 ; Query CbirOr335 ; Align 482083 163 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr335 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 334 -> 393 Target range: 454310 -> 454562 335 : AsnIleGlnTrpTyrLysCysProGlnArgIleGlnLysLeuIleLeuLeuLeuLeuG : 354 ||| !!!.|||||| ! !|||! ! !!:!|||||| !||||||:!!|||| AsnSerHisTrpTyrAspValProLeuAspAlaArgLysLeuTyrLeuLeuIleLeuG 454311 : AATTCACACTGGTACGATGTTCCTCTTGATGCTCGAAAGTTGTACCTACTCATTCTGC : 454368 355 : lnArgLysAlaLysGluPheHisLeuThrCysGlyGlyLeuPheIleAlaSerPheGl : 373 |||||!.. !|||...! ! !!!:!! ..!! !|||!:!:!!:!!|||!!.:! lnArgSerMetLysSerSerSerPheSerIleSerAspLeuTyrValSerSerLeuGl 454369 : AACGAAGTATGAAAAGCTCCTCGTTCTCCATATCCGATTTATACGTTTCGTCGTTACA : 454425 374 : uCysLeuAlaThr >>>> Target Intron 1 >>>> LeuValLysAlaThrM : 383 ! ! |||::!.!! 75 bp ||||||!...!! !| nGlyLeuSerAla++ ++LeuValSerThrGlyM 454426 : GGGACTAAGCGCGgt.........................agTTAGTAAGCACGGGCA : 454530 384 : etSerTyrPheThrLeuIleTyrSerAlaArg : 393 ||||||||||||||!!!:!!||||||!.!!:! etSerTyrPheThrPheLeuTyrSerValGln 454531 : TGTCGTATTTCACGTTCCTCTATTCCGTGCAA : 454562 vulgar: CbirOr335 334 393 . KQ414815.1 454310 454562 + 108 M 43 129 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 454311 454562 108 + . gene_id 4 ; sequence CbirOr335 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 454311 454439 . + . KQ414815.1 exonerate:protein2genome:local exon 454311 454439 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 454440 454441 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 454440 454514 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 454513 454514 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 454515 454562 . + . KQ414815.1 exonerate:protein2genome:local exon 454515 454562 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 454311 454562 108 + . alignment_id 4 ; Query CbirOr335 ; Align 454311 335 129 ; Align 454515 378 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr335 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 162 -> 213 Target range: 475617 -> 475770 163 : IleAlaThrGluTyrPheIleAspGluGlnLysTyrPheTyrLeuIleValPheHisM : 182 ||| ||||||||||||:::|||||||||||||||||||||! !|||.!!:!!. IleArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrG 475618 : AtacgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATC : 475675 183 : etTyrThrAlaLeuPheIleGlyThrPheSerAlaIleAlaIleGluThrLeuMetIl : 201 .! !..!.!!:!!.!!:!: ! ! !!!! !:!!|||! !|||.!!:!!.!.! lnThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheTh 475676 : AGACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTAC : 475732 202 : eAlaTyrLeuGlnHisThrSerGlyMetPheArgIle : 213 ! !!::||||||||| !! ...:::|||...||| rMetTrpLeuGlnHisCysIleSerLeuPheGluIle 475733 : CATGTGGTTGCAACATTGCATaagtttatttgaaatt : 475770 vulgar: CbirOr335 162 213 . KQ414815.1 475617 475770 + 101 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475618 475770 101 + . gene_id 5 ; sequence CbirOr335 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475618 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475618 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475618 475770 101 + . alignment_id 5 ; Query CbirOr335 ; Align 475618 163 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr358 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 146 -> 213 Target range: 485725 -> 485926 147 : LeuAspAsnValAlaProIleAsnGlyCysArgProArgArgLeuTyrIleAspValG : 166 ||||||! !:!! !|||:!:||| ! !|||||||||! !:!! !|||:!! !| LeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnSerG 485726 : CTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACTCGG : 485783 167 : luTyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnAlaAl : 185 ||:!!|||:!!||||||:!!||||||!:!||| !||| ! !|||:!: ! ! luHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLeuPh 485784 : AACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCTCTT : 485840 186 : aLeuPheIleGlyIleLeuThrLeuLeuAlaThrGlyThrLeuMetValMetPhePhe : 204 !:!!.!!|||||| :!!..!||||||::!||| |||:::::: !.!..!. eValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIleIle 485841 : CGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATAATA : 485897 205 : GlnHisAlaCysGlyMetPheLysIle : 213 ||||||.!!||||||:!!!:!! !||| GlnHisThrCysGlyLeuTyrThrIle 485898 : CAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr358 146 213 . KQ414815.1 485725 485926 + 154 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485726 485926 154 + . gene_id 1 ; sequence CbirOr358 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485726 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485726 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485726 485926 154 + . alignment_id 1 ; Query CbirOr358 ; Align 485726 147 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr358 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 127 -> 214 Target range: 448037 -> 448298 128 : ValPheValGlyIleThrLysLeuAlaPheTrpAlaValGlnIleValIleProTyrL : 147 ||| ! !!!.!:!::!! !:!!::!||| !|||:!!.!!|||:!! :::| ValValPheAlaLeuSerLeuIleSerPheThrLeuValGluPheValValHisPheL 448038 : gtGGTGTTTGCCTTGTCTTTAATTAGCTTTACCTTGGTTGAGTTCGTGGTAcattttc : 448095 148 : euAspAsnValAlaProIleAsnGlyCysArgProArgArgLeuTyrIleAspValGl : 166 ||||| ::: !|||!!:|||! !! !! !! !!.!..!||| !.!! :!!:! euAspIleLeuMetProMetAsnValSerThrArgHisGluLeuProPheLeuIleGl 448096 : tcgatattttaATGCCAATGAACGTATCTACACGGCACGAGCTACCCTTCCTAATTCA : 448152 167 : uTyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnAlaAla : 185 !! !||| !||||||!!:|||!:!!:!:!! !||||||:!! !:!!! !!.! ! nCysPheCysAspGlnAspLysPhePheHisTyrIleLeuValPheLeuIleValLeu 448153 : ATGTTTCTGTGATCAAGATAAATTCTTCCACTATATATTAGTTTTCTTGATCGTTCTC : 448209 186 : LeuPheIleGlyIleLeuThrLeuLeuAlaThrGlyThrLeuMetValMetPhePheG : 205 !.!!:!:||| ! !..!:!!||||||||| !||| ! :!!!!:||| !| ThrIleLeuGlyGlySerValValLeuAlaThrThrThrThrTyrLeuIlePheSerG 448210 : ACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAACGACTTACTTGATATTCAGTC : 448269 206 : lnHisAlaCysGlyMetPheLysIleAla : 214 |||||..!||||||:!!|||||||||||| lnHisCysCysGlyLeuPheLysIleAla 448270 : AACATTGTTGTGGATTGTTCAAAATTGCA : 448298 vulgar: CbirOr358 127 214 . KQ414815.1 448037 448298 + 146 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448038 448298 146 + . gene_id 2 ; sequence CbirOr358 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448038 448298 . + . KQ414815.1 exonerate:protein2genome:local exon 448038 448298 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448038 448298 146 + . alignment_id 2 ; Query CbirOr358 ; Align 448038 128 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr358 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 146 -> 213 Target range: 482034 -> 482235 147 : LeuAspAsnValAlaProIleAsnGlyCysArgProArgArgLeuTyrIleAspValG : 166 |||||| !:!!!.!|||:!!|||! ! !||| !!!.!!:!!!! :!!...:!!| LeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMetG 482035 : CTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGG : 482092 167 : luTyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnAlaAl : 185 |||||||||||||||||:!!||||||! ! !!||| !.!!|||..! !:! luTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSe 482093 : AGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTC : 482149 186 : aLeuPheIleGlyIleLeuThrLeuLeuAlaThrGlyThrLeuMetValMetPhePhe : 204 !!!!.!!:!!! ! ! !! !:!!:!!!.!! !! !||||||!!:||||||!::.!! rPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeu 482150 : CTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTT : 482206 205 : GlnHisAlaCysGlyMetPheLysIle : 213 :!!||||||....!!:!!|||! :!! GluHisAlaAlaSerLeuPheThrLeu 482207 : GAACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: CbirOr358 146 213 . KQ414815.1 482034 482235 + 117 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482035 482235 117 + . gene_id 3 ; sequence CbirOr358 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482035 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 482035 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482035 482235 117 + . alignment_id 3 ; Query CbirOr358 ; Align 482035 147 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr337 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 293 -> 389 Target range: 458113 -> 458705 294 : MetGlnGluIleGluLysThrValGlyHisPheGlnLeuIleIlePheLeuLeuIleT : 313 |||:!!.!.!!::!!:!! !:!!!.! !.!.! !|||!!:||| !! !!!!:!!| MetGluAsnMetLysGluLeuLeuAlaAlaMetLeuLeuMetIleSerHisPheLeuT 458114 : ATGGAAAACATGAAGGAGCTGCTAGCTGCTATGCTACTCATGATCAGTCACTTCCTTT : 458171 314 : yrMetPheValAlaAsnTyrAlaGlyGlnGluMetThrAspTyrAsnAsnHisIlePh : 332 ||! |||:!!|||||||||||||||||| :!!! !|||:!!!:!! ! !!:!!|| yrThrPheLeuAlaAsnTyrAlaGlyGlnIleValMetAspHisSerIleAspValPh 458172 : ACACATTTCTGGCGAACTATGCCGGGCAAATCGTGATGGATCACAGTATCGACGTTTT : 458228 333 : eLeuThr{Va} >>>> Target Intron 1 >>>> {l}TyrAsnAlaProTrp : 340 | !! !{..} 304 bp {!}||| !|||||| eAspLys{Th}++ ++{r}TyrLeuIleProTrp 458229 : CGATAAA{AC}gt.........................ag{A}TACTTGATTCCATGG : 458556 341 : TyrLeuAlaProLeuGlnIleGlnLysLeuThrLeuPheLeuLeuGlnArgSerAsnL : 360 |||! !|||||||||!:!|||||||||! ! !||||||:!!! !:!!||||||!!.! TyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleSerGluArgSerLysA 458557 : TACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATATCAGAACGCAGCAAAA : 458616 361 : ysAlaPheThrLeuSerIleGlyGlyLeuPheThrLeuSerIleGluCysPheAlaSe : 379 :!!.! !:!!|||!!!!!: !|||:!!.!!! ! |||...||| ||||||:! rgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPheGluPhePheAlaTh 458617 : GAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatccttcgaatttttcgccaC : 458673 380 : rLeuValSerAlaSerValSerTyrPheThr : 389 !:!!..!!.!:!!!!!::: :::|||::: rValThrLysSerTrpLeu***HisPheSer 458674 : GGTAACAAAATCTTGGCtatgacatttttct : 458705 vulgar: CbirOr337 293 389 . KQ414815.1 458113 458705 + 154 M 41 123 S 0 2 5 0 2 I 0 300 3 0 2 S 1 1 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458114 458705 154 + . gene_id 1 ; sequence CbirOr337 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 458114 458238 . + . KQ414815.1 exonerate:protein2genome:local exon 458114 458238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 458239 458240 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 458239 458542 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 458541 458542 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458543 458705 . + . KQ414815.1 exonerate:protein2genome:local exon 458543 458705 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458114 458705 154 + . alignment_id 1 ; Query CbirOr337 ; Align 458114 294 123 ; Align 458544 336 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr337 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 128 -> 215 Target range: 457153 -> 457411 129 : IleValAlaIleCysAsnGlnAlaCysValThrAlaValGlnCysAlaProTyrIleP : 148 :!! !.!! !|||..! ! ! !:!!|||.!!:!!||| ! !||| :!!. ValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuL 457154 : GTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTAC : 457211 149 : heAspValIleMetHisLysAsnGluThrTyrAlaArgArgPheIleValAlaLeuTh : 167 !!|||:!!:!::!:! !||||||:!! ! !! !!..!!!. !:!!.!! .! euAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrLeuThr---Al 457212 : TCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTACA---GC : 457265 168 : rThrTyrPheAlaIleGlnGluLysTyrPheTyrLeuPheLeuLeuHisLeuAsnThr : 186 ! !||||||!.! !..!:!!||||||.!.:!!! !.!!:!! !|||:!!! !||| aGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleThr 457266 : GGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCACG : 457322 187 : ValMetAlaValGlySerLeuAlaLeuLeuAlaIleGlyThrThrValLeuSerCysP : 206 !:!: !:!!!.!:!! !.!!||| !|||! !! !:!! !:!!:!!!!! ! CysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnV 457323 : TGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACG : 457382 207 : heLysHisIleCysGlyLeuPheArgIle : 215 ! !|||:!!||||||||||||!:!:!! alLeuHisValCysGlyLeuPheLysLeu 457383 : TACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr337 128 215 . KQ414815.1 457153 457411 + 101 M 37 111 G 1 0 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457154 457411 101 + . gene_id 2 ; sequence CbirOr337 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457154 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457154 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457154 457411 101 + . alignment_id 2 ; Query CbirOr337 ; Align 457154 129 111 ; Align 457265 167 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr346PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 252 -> 347 Target range: 458116 -> 458705 253 : GlnAsnIleAspGluCysLeuPheHisLeuIlePheAlaIleAspMetLeuIleTyrS : 272 :!!|||!!: ! ||| ||| ! !:!!:!!.!! !|||..! !!!:!!|||! GluAsnMetLysGluLeuLeuAlaAlaMetLeuLeuMetIleSerHisPheLeuTyrT 458117 : GAAAACATGAAGGAGCTGCTAGCTGCTATGCTACTCATGATCAGTCACTTCCTTTACA : 458174 273 : erPheIleAlaAsnTyrSerGlyGlnGluValIleGluHisTyrAsnAspIlePheSe : 291 !!|||:!:|||||||||:!!|||||| |||!!:!!:||| !! !|||:!!|||.. hrPheLeuAlaAsnTyrAlaGlyGlnIleValMetAspHisSerIleAspValPheAs 458175 : CATTTCTGGCGAACTATGCCGGGCAAATCGTGATGGATCACAGTATCGACGTTTTCGA : 458231 292 : rVal{Al} >>>> Target Intron 1 >>>> {a}TyrSerValGlnTrpTyr : 299 ! !{.!} 304 bp {!}|||! !:!!! !|||||| pLys{Th}++ ++{r}TyrLeuIleProTrpTyr 458232 : TAAA{AC}gt.........................ag{A}TACTTGATTCCATGGTAC : 458559 300 : ThrAlaProValArgIleGlnLysLeuIleLeuPheLeuLeuGluArgSerCysLysA : 319 !||||||:!!||||||||||||! !:!!||||||:!!! !||||||||| !:! ArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleSerGluArgSerLysArgV 458560 : CGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATATCAGAACGCAGCAAAAGAG : 458619 320 : snTyrGlyValArgValGlyGlyLeuPheIleThrSerLeuGluGlyPheAlaThrLe : 338 !..!:!! !!:!! !|||:!!.!!|||.!.|||...||| |||||||||:! alSerSerLeuCysMetTyrGlyMetIleIleAlaSerPheGluPhePheAlaThrVa 458620 : TGAGTTCCTTGTGCATGTATGGCATGATCATTGCatccttcgaatttttcgccaCGGT : 458676 339 : uPheThrThrSerIleSerTyrPheThr : 347 ! ! !:!!!!!::: :::|||::: lThrLysSerTrpLeu***HisPheSer 458677 : AACAAAATCTTGGCtatgacatttttct : 458705 vulgar: CbirOr346PI 252 347 . KQ414815.1 458116 458705 + 175 M 40 120 S 0 2 5 0 2 I 0 300 3 0 2 S 1 1 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458117 458705 175 + . gene_id 1 ; sequence CbirOr346PI ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 458117 458238 . + . KQ414815.1 exonerate:protein2genome:local exon 458117 458238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 458239 458240 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 458239 458542 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 458541 458542 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458543 458705 . + . KQ414815.1 exonerate:protein2genome:local exon 458543 458705 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458117 458705 175 + . alignment_id 1 ; Query CbirOr346PI ; Align 458117 253 120 ; Align 458544 294 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr346PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 86 -> 174 Target range: 457150 -> 457411 87 : ThrValPheAlaValCysCysValPheMetLeuSerLeuLeuProIleLeuProTrpI : 106 ||||||! !.!! !||| !!!.!.!.:!::!!!!! !|||! !:!!!!!||| : ThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheProIleL 457151 : ACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATAT : 457208 107 : leLeuGlyThrPheLeuPheAlaAsnGluSerGlnProLeuTyrAspIleGlnIleVa : 125 !!|||! !! ! ! :!! !|||||||||!::|||! ! !!::!! ! :!!.. euLeuAspIleValValProLeuAsnGluSerArgProCys---GluLeuTyrLeuTh 457209 : TACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGT---GAGTTATACCTTAC : 457262 126 : lThrGluTyrPheValAspLysGluLysThrPheTyrLeuThrLeuLeuHisThrTyr : 144 !.!!|||||||||||||||! !:!!||| !.!.:!!! !! !:!! !|||! ! ! rAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIle 457263 : AGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATC : 457319 145 : AlaSerLeuTyrIleGlyValThrAlaMetValGlyGlyGlyMetMetLeuIleAlaT : 164 .!!!!!||| |||!.!!.!|||.!!:!:..!!.!..!! ! :!:||||||.!! ThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrA 457320 : ACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGA : 457379 165 : yrLeuIleHisIleCysGlyLeuPheSerIle : 174 !!:!!:!:|||:!!||||||||||||!.!:!! snValLeuHisValCysGlyLeuPheLysLeu 457380 : ACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr346PI 86 174 . KQ414815.1 457150 457411 + 129 M 33 99 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457151 457411 129 + . gene_id 2 ; sequence CbirOr346PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457151 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457151 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457151 457411 129 + . alignment_id 2 ; Query CbirOr346PI ; Align 457151 87 99 ; Align 457250 121 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr346PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 124 -> 248 Target range: 478635 -> 479408 125 : ValThrGluTyrPheValAspLysGluLysThrPheTyrLeuThrLeuLeuHisThrT : 144 ..!||||||||||||:!!|||::::::||| ||| ... ::: |||..!| ThrThrGluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValT 478636 : ACCACGGAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGT : 478693 145 : yrAlaSerLeuTyrIleGlyValThrAlaMetValGlyGlyGlyMetMetLeuIleAl : 163 || !|||||| !!: !!.!|||!.! |||!.! !! ! ! :!!||| yrLeuSerLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMe 478694 : ACCTGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTAT : 478750 164 : aTyrLeuIleHisIleCysGlyLeuPheSerIleAlaSerTyrArgMetGlu{Gl} : 181 !!:::!!:!:|||! ! !||||||!:!!:!||| !!!!|||!.!..!:!!{..} tTrpMetValHisThrIleGlyLeuTyrAsnIleIleArgTyrAsnGlnGln{Se}-+ 478751 : GTGGATGGTGCATACTATCGGCTTGTATAATATCATAAGGTATAATCAGCAA{AG}at : 478806 182 : >>>> Target Intron 1 >>>> {n}SerLeuIleLeuAsnIleAsnGluLysP : 191 301 bp {.}! !! !|||! !!!.||| !...||| ++{r}TyrArgIleGlnLysIleValArgLysA 478807 : .........................ag{T}TATCGAATTCAAAAAATCGTTCGTAAGG : 479135 192 : ro<->AsnLeuArgAsnLysLysGluIleAspLysLysIleGlyHisAlaValAspVa : 209 ! ||| !||| !!.! !.!.||| ! ||| :!: !||||||:!!! !.. spLeuAsnSerArgLeuAsnThrAsnIleLysLysGlyValIleHisAlaIleAlaTh 479136 : ACTTGAACAGTCGTTTGAATACGAACATTAAAAAAGGTGTGATACATGCCATAGCTAC : 479192 210 : lHisArgThrAlaIle{Gl} >>>> Target Intron 2 >>>> {u}LeuSer : 217 !|||||||||||||||{:!} 97 bp {!}!!!! ! rHisArgThrAlaIle{Gl}++ ++{n}PhePhe 479193 : TCATAGAACAGCAATA{CA}gt.........................ag{G}TTTTTT : 479313 218 : GluPhePheIleSerAsnPheHisGlyThrPhePheCysIleIleAlaMetMetValL : 237 .!. ! ! |||!!!:!!! ! !.!!!:! ! !:!!:!! !.!. :!! HisAspValIleArgAspSerIleProAlaTyrSerValLeuLeuLeuPheAlaIleT 479314 : CACGATGTGATAAGGGACTCTATACCAGCGTACAGTGTTCTCCTTTTGTTCGCTATCA : 479373 238 : euCysLeuSerLeuAsnLeuTyrGlnIleSerGln : 248 !! ||||||:!!|||||||||!:::!:|||::: hrSerLeuSerIleAsnLeuTyrArgValSerGlu 479374 : CCTCGTTGAGCATTAATTTGTATCGTGTgagtgaa : 479408 vulgar: CbirOr346PI 124 248 . KQ414815.1 478635 479408 + 121 M 56 168 S 0 2 5 0 2 I 0 297 3 0 2 S 1 1 M 10 30 G 0 3 M 23 69 S 0 2 5 0 2 I 0 93 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478636 479408 121 + . gene_id 3 ; sequence CbirOr346PI ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 478636 478805 . + . KQ414815.1 exonerate:protein2genome:local exon 478636 478805 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 478806 478807 . + . intron_id 1 ; splice_site "AT" KQ414815.1 exonerate:protein2genome:local intron 478806 479106 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 479105 479106 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 479107 479211 . + . KQ414815.1 exonerate:protein2genome:local exon 479107 479211 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 479212 479213 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 479212 479308 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 479307 479308 . + . intron_id 1 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 479309 479408 . + . KQ414815.1 exonerate:protein2genome:local exon 479309 479408 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478636 479408 121 + . alignment_id 3 ; Query CbirOr346PI ; Align 478636 125 168 ; Align 479108 182 30 ; Align 479141 192 69 ; Align 479310 216 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr346PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 287 -> 343 Target range: 490182 -> 490350 288 : AspIlePheSerValAlaTyrSerValGlnTrpTyrThrAlaProValArgIleGlnL : 307 :!!|||.!!!:! !..! !!||||||.!.|||||||||||||||:!! !||||||| AsnIleLeuAsnArgCysAsnSerValAsnTrpTyrThrAlaProIleAlaIleGlnL 490183 : AACATACTTAATAGATGCAACAGCGTGAATTGGTACACGGCTCCAATTGCCATACAAA : 490240 308 : ysLeuIleLeuPheLeuLeuGluArgSerCysLysAsnTyrGlyValArgValGlyGl : 326 |||||:!:|||.!!:!!:!!:!!!.!!!! ::!|||! !..!:!!! !:!! !|| ysLeuLeuLeuIleIleMetGlnAsnThrIleArgAsnSerSerIleThrLeuPheGl 490241 : AATTGCTGTTGATCATTATGCAAAATACTATACGAAATTCTTCAATAACACTCTTCGG : 490297 327 : yLeuPheIleThrSerLeuGluGlyPheAlaThrLeuPheThrThrSerIle : 343 |:!!!:!|||:!!|||!!!!!:|||||| !! !:!! !!.!||| ||| yMetTyrIleSerSerPheAspGlyPhePheMetValAsnAsnThrIleIle 490298 : AATGTATATATCGTCTTTCGATGGTTTCTTCATGGTAAATAACAcgattatt : 490350 vulgar: CbirOr346PI 287 343 . KQ414815.1 490182 490350 + 117 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 490183 490350 117 + . gene_id 4 ; sequence CbirOr346PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 490183 490350 . + . KQ414815.1 exonerate:protein2genome:local exon 490183 490350 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 490183 490350 117 + . alignment_id 4 ; Query CbirOr346PI ; Align 490183 288 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr346PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 1 -> 49 Target range: 477928 -> 478072 2 : IleSerIleAlaGlnHisPheArgLeuHisArgAsnValLeuPheValIleGlyLeuT : 21 :!!..!:!! !|||:!!!:!!.!!!!|||!:!|||:!!||| !.!|||||||||| ValGluLeuMetGlnTyrTyrAsnPheHisLysAsnLeuLeuThrAlaIleGlyLeuT 477929 : GTTGAACTAATGCAGTATTACAACTTCCACAAGAACCTATTAACGGCAATAGGACTTT : 477986 22 : rpProTyrAsnGlnSerLysPheValLysLeuGlnLeuIleLeuPheLeuPheValGl : 40 ||||||||:!!.!.!!!|||||| !! !|||||| !! !:!! !! !|||:!!!: rpProTyrHisAsnThrLysPheArgThrLeuGlnAsnSerIleValSerPheIleAr 477987 : GGCCGTACCATAACACGAAATTCAGAACATTACAAAACAGTATTGTCAGCTTCATTCG : 478043 41 : nThrSerPheIleValPheGlnLeuThr : 49 : !||||||:!!!.! ! |||:!!:!! gPheSerPheValAlaValGlnValSer 478044 : CTTTTCGTTTGTAGCTGTACAGGTATCT : 478072 vulgar: CbirOr346PI 1 49 . KQ414815.1 477928 478072 + 111 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 477929 478072 111 + . gene_id 5 ; sequence CbirOr346PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 477929 478072 . + . KQ414815.1 exonerate:protein2genome:local exon 477929 478072 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 477929 478072 111 + . alignment_id 5 ; Query CbirOr346PI ; Align 477929 2 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr349PN Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 167 -> 235 Target range: 476685 -> 476964 168 : TyrAsnAspMetPheSerTyrAlaTyrAsnValArgTrpTyrThrAlaProIleHisI : 187 |||...... ! ! !||| !|||||| !..!|||||||||||||||:!! | TyrThrSerArg***IleTyrArgTyrAsnSerGluTrpTyrThrAlaProLeuSerI 476686 : tatacgtcACGATGAATTTATAGATACAACTCTGAATGGTACACAGCGCCGTTATCca : 476743 188 : leGlnLysLeuIleLeuPheLeuLeuGlnArgArgCysLysProTyrGlyLeuLysLe : 206 |||||||||||:::......:::::! !|||! ! |||||| ! !! !||| leGlnLysLeuLeuPheLeuIleIleLeuArgThrThrLysProProIleSerLysAl 476744 : ttcaaaaattattatttcttataatATTACGAACAACGAAACCACCCATTTCGAAGGC : 476800 207 : uGlyGlyIlePheThrAlaSerLeuGluSerPheAlaSer >>>> Target Intr : 220 !! ! !:!!!:!|||||||||:!!|||||||||.!! ! 75 bp aValPheValTyrThrAlaSerMetGluSerPheThrVal++ 476801 : AGTGTTCGTATATACTGCATCGATGGAAAGTTTCACGGTGgt................ : 476844 221 : on 1 >>>> LeuLeuThrAlaSerValSerTyrPheThrValIleTyrSerThrGl : 235 |||:!!! !:!!|||||||||||||||! !||||||||||||! !|| ++LeuValLysSerSerValSerTyrPheMetValIleTyrSerIleGl 476845 : .........agCTGGTAAAATCATCAGTGTCTTATTTCATGGTGATATACTCTATCCa : 476962 236 : n : 235 | n 476963 : g : 476964 vulgar: CbirOr349PN 167 235 . KQ414815.1 476685 476964 + 152 M 52 156 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 476686 476964 152 + . gene_id 1 ; sequence CbirOr349PN ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 476686 476841 . + . KQ414815.1 exonerate:protein2genome:local exon 476686 476841 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 476842 476843 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 476842 476916 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 476915 476916 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 476917 476964 . + . KQ414815.1 exonerate:protein2genome:local exon 476917 476964 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 476686 476964 152 + . alignment_id 1 ; Query CbirOr349PN ; Align 476686 168 156 ; Align 476917 220 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr349PN Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 5 -> 85 Target range: 457174 -> 457411 6 : LeuThrIleThrLeuMetProLeuPheProArgIleLeuSerThrPheLeuLeuValA : 25 |||..!|||||| !:!!! !|||||||||! !:!!|||..!! ! ! :!!! !:!!| LeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuA 457175 : CTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGA : 457232 26 : snIleSerArgProLeuTyrAsnMetGlnPheIleThrGluTyrPheValAspLysGl : 44 || !|||||||||! ! .!.:!: ! .!!! !.!!|||||||||||||||! !:! snGluSerArgProCys---GluLeuTyrLeuThrAlaGluTyrPheValAspMetLy 457233 : ACGAATCACGCCCCTGT---GAGTTATACCTTACAGCGGAATACTTTGTCGACATGAA : 457286 45 : uLysAsnPheTyrLeuIleLeuLeuHisThrHisThrSerPheTyrIleGlyValIle : 63 !||| !!.!.:!!! !|||:!! !|||! ! !|||!!!.!. |||!.!!.!! ! sLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThr 457287 : AAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACC : 457343 64 : AlaLeuValGlyGlyGlyLeuLeuGlyCysAlaPheLeuLysHisIleCysGlyLeuP : 83 .!!|||..!!.!..!! !! !||| ! .!! !:!! !|||:!!|||||||||| ThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuP 457344 : ACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGT : 457403 84 : heSerIle : 85 ||!.!:!! heLysLeu 457404 : TCAAGCTT : 457411 vulgar: CbirOr349PN 5 85 . KQ414815.1 457174 457411 + 110 M 25 75 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457175 457411 110 + . gene_id 2 ; sequence CbirOr349PN ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457175 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457175 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457175 457411 110 + . alignment_id 2 ; Query CbirOr349PN ; Align 457175 6 75 ; Align 457250 32 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr349PN Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 173 -> 221 Target range: 441699 -> 441843 174 : TyrAlaTyrAsnValArgTrpTyrThrAlaProIleHisIleGlnLysLeuIleLeuP : 193 ||| !|||||| !! !|||||| !!.!|||:!! ! |||||||||:!!|||| TyrArgTyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuP 441700 : TATAGATACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGT : 441757 194 : heLeuLeuGlnArgArgCysLysProTyrGlyLeuLysLeuGlyGlyIlePheThrAl : 212 ||:!!:!!..!!:!!!! ! |||! ! !:!!!!.|||..!|||||||||.!! ! heIleMetMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaPr 441758 : TCATCATGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCC : 441814 213 : aSerLeuGluSerPheAlaSerLeuLeu : 221 !!!!! !:!!.!!|||:!!|||:!!:!! oCysTyrLysGlyPheSerSerValIle 441815 : GTGTTACAAAGGTTTTTCCTCGGTAATT : 441843 vulgar: CbirOr349PN 173 221 . KQ414815.1 441699 441843 + 104 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441700 441843 104 + . gene_id 3 ; sequence CbirOr349PN ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441700 441843 . + . KQ414815.1 exonerate:protein2genome:local exon 441700 441843 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441700 441843 104 + . alignment_id 3 ; Query CbirOr349PN ; Align 441700 174 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr353 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 179 Query range: 293 -> 389 Target range: 458113 -> 458705 294 : MetLysGluLysGluGluThrLeuSerHisPhePheIleThrLeuPheIleLeuLeuT : 313 |||:!!.!.! !:!!||| !|||:!! !.!..!.:!!! !:!! ! !!!!|||| MetGluAsnMetLysGluLeuLeuAlaAlaMetLeuLeuMetIleSerHisPheLeuT 458114 : ATGGAAAACATGAAGGAGCTGCTAGCTGCTATGCTACTCATGATCAGTCACTTCCTTT : 458171 314 : yrMetPheIleAlaAsnTyrAlaGlyGlnGluIleIleAspAspAsnAsnHisValPh : 332 ||! |||:!:|||||||||||||||||| :!:!!:||| !!!:!! ! !!||||| yrThrPheLeuAlaAsnTyrAlaGlyGlnIleValMetAspHisSerIleAspValPh 458172 : ACACATTTCTGGCGAACTATGCCGGGCAAATCGTGATGGATCACAGTATCGACGTTTT : 458228 333 : ePheThr{Al} >>>> Target Intron 1 >>>> {a}TyrAsnIleProTrp : 340 | !! !{.!} 304 bp {!}||| ||||||||| eAspLys{Th}++ ++{r}TyrLeuIleProTrp 458229 : CGATAAA{AC}gt.........................ag{A}TACTTGATTCCATGG : 458556 341 : TyrLeuAlaProLeuHisIleGlnLysLeuIleLeuPheLeuLeuGlnArgAsnSerL : 360 |||! !|||||||||!..|||||||||! !:!!||||||:!!! !:!!|||!:!!.!! TyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleSerGluArgSerLysA 458557 : TACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATATCAGAACGCAGCAAAA : 458616 361 : ysAlaPheThrLeuAsnPheHisGlyLeuLeuIleAlaSerLeuGluCysPheAlaSe : 379 :!!.! !:!!||| !.!.:!!|||:!!:!!|||||||||...||| ||||||:! rgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPheGluPhePheAlaTh 458617 : GAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatccttcgaatttttcgccaC : 458673 380 : rLeuAlaSerAlaSerValSerTyrPheThr : 389 !:!!.!!!.!:!!!!!::: :::|||::: rValThrLysSerTrpLeu***HisPheSer 458674 : GGTAACAAAATCTTGGCtatgacatttttct : 458705 vulgar: CbirOr353 293 389 . KQ414815.1 458113 458705 + 179 M 41 123 S 0 2 5 0 2 I 0 300 3 0 2 S 1 1 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458114 458705 179 + . gene_id 1 ; sequence CbirOr353 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 458114 458238 . + . KQ414815.1 exonerate:protein2genome:local exon 458114 458238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 458239 458240 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 458239 458542 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 458541 458542 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458543 458705 . + . KQ414815.1 exonerate:protein2genome:local exon 458543 458705 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458114 458705 179 + . alignment_id 1 ; Query CbirOr353 ; Align 458114 294 123 ; Align 458544 336 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr353 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 5 -> 64 Target range: 477934 -> 478111 6 : IleGluArgTyrPheSerPheAsnArgIleIleLeuLeuAlaIleGlyLeuTrpProT : 25 :!! !!:!|||!:!!:!|||:!!!:!! !:!!||| !||||||||||||||||||| LeuMetGlnTyrTyrAsnPheHisLysAsnLeuLeuThrAlaIleGlyLeuTrpProT 477935 : CTAATGCAGTATTACAACTTCCACAAGAACCTATTAACGGCAATAGGACTTTGGCCGT : 477992 26 : yrGluGlnSerThrPheAlaGlnLeuGlnMetValValIleLeuGlyIleLeuIleSe : 44 ||.!..!.!!!! !||| ! !||||||! !:!!:!! ! !|||! !.!!|| yrHisAsnThrLysPheArgThrLeuGlnAsnSerIleValSerPheIleArgPheSe 477993 : ACCATAACACGAAATTCAGAACATTACAAAACAGTATTGTCAGCTTCATTCGCTTTTC : 478049 45 : rPheAspAlaPheGlnLeuSerArgLeuLeuPheValGluCysThrPheAspPheThr : 63 ||||! ||| ! |||:!!||| !!! ||| |||...|||||| rPheValAlaValGlnValSerCysProLeuCysAsnLeuLeuHisPheSerPheThr 478050 : GTTTGTAGCTGTACAGGTATCTTGTCctttatgtaatttattacattttagtTTCACG : 478106 64 : Leu : 64 ||| Leu 478107 : TTA : 478111 vulgar: CbirOr353 5 64 . KQ414815.1 477934 478111 + 106 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 477935 478111 106 + . gene_id 2 ; sequence CbirOr353 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 477935 478111 . + . KQ414815.1 exonerate:protein2genome:local exon 477935 478111 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 477935 478111 106 + . alignment_id 2 ; Query CbirOr353 ; Align 477935 6 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr354 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 123 -> 215 Target range: 457141 -> 457414 124 : AlaArgLeuThrIlePheThrIleCysGlyLeuPhePheAsnPheIleIleIleTyrS : 143 ::!! !:!!|||:!!! !||| !|||||| !.!. !!! ! !! :!: ! !! SerMetIleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuP 457142 : tcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCT : 457199 144 : erProPheIleLeuAspValValIleProLysAsnGluSerTyrAlaIlePheIleMe : 162 !|||.!.:!!||||||:!!|||:!!||| !||||||||| ! !! ! :!! heProIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTy 457200 : TTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATA : 457256 163 : tLysMetValThrLysTyrPheValValSerGluLysTyrTyrPheLeuIleIleVal : 181 :!:..!.!!:!!|||||||||! !! !:!!|||||| !! !||||||!.! r---LeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAla 457257 : C---CTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCG : 457310 182 : HisValAsnAlaAlaPheSerValGlyMetIleValLeuThrGlyThrGlyThrMetM : 201 |||:!!! !.!!..!.!. !:!!!.! ! !..!||||||!.!!.!! !:!!:!:: HisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuL 457311 : CACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTAC : 457370 202 : etIleSerTyrPheLysTyrAlaCysGlyMetPheGluIleThr : 215 !:|||!!! !! ! !:!!!.!||||||:!!|||:!!:!!||| euIleThrAsnValLeuHisValCysGlyLeuPheLysLeuThr 457371 : TTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTTACT : 457414 vulgar: CbirOr354 123 215 . KQ414815.1 457141 457414 + 126 M 39 117 G 1 0 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457142 457414 126 + . gene_id 1 ; sequence CbirOr354 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457142 457414 . + . KQ414815.1 exonerate:protein2genome:local exon 457142 457414 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457142 457414 126 + . alignment_id 1 ; Query CbirOr354 ; Align 457142 124 117 ; Align 457259 164 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr352PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 116 -> 213 Target range: 457123 -> 457411 117 : AspThrLysArgTyrThrLeuIleLeuPheLeuCysAlaThrCysGlyIleValPheT : 136 ::: |||::: !!!::!! :!!! !.!! !|||||| !:!! !! AsnAspLysLysLysProSerMetIleThrValSerThrTyrCysGlyAlaLeuValI 457124 : aatgataaaaaaaaaccttcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTA : 457181 137 : yrSerPheLeuProLeuTrpProGlnIleLeuSerThrValLeuProIleAsnValSe : 155 !!!! |||! !|||!::||| !:!!|||..!! !|||:!!|||:!:|||! !|| leThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSe 457182 : TTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATC : 457238 156 : rGlnThrGlnArgIleMetLeuIleMetThrGluTyrPheValAspGlnGluArgTyr : 174 |!:: !! ..!:!! ||| ! .!!|||||||||||||||..!:!!!:!||| rArgProCysGluLeuTyrLeu---ThrAlaGluTyrPheValAspMetLysLysTyr 457239 : ACGCCCCTGTGAGTTATACCTT---ACAGCGGAATACTTTGTCGACATGAAAAAGTAT : 457292 175 : PheTyrLeuLeuLeuLeuHisIleAsnThrAlaThrTyrIleGlyLeuIleValAlaI : 194 .!.:!!! !:!!:!! !||||||! !|||..! ! |||!.! !! !..! !! MetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuT 457293 : ATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAA : 457352 195 : leAlaThrGlyThrValLeuLeuGlyCysIleIleHisAlaCysGlyLeuPheSerIl : 213 !|||!.!! !:!!:!!|||:!! ! !:!!:!:|||!.!||||||||||||!.!:! hrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLe 457353 : CAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCT : 457409 214 : e : 213 ! u 457410 : T : 457411 vulgar: CbirOr352PSE 116 213 . KQ414815.1 457123 457411 + 134 M 46 138 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457124 457411 134 + . gene_id 1 ; sequence CbirOr352PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457124 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457124 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457124 457411 134 + . alignment_id 1 ; Query CbirOr352PSE ; Align 457124 117 138 ; Align 457262 164 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr352PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 113 -> 213 Target range: 460943 -> 461240 114 : TyrGlyAsnAspThrLysArgTyrThrLeuIleLeuPheLeuCysAlaThrCysGlyI : 133 |||||| ||| ...:::...... ! !!.! !! !!: TyrGlyValAspLeuIleAspIlePhePheValPheLeuAlaIleValPheLeuCysL 460944 : TATGGTGTAGATttaattgacatttttttcgtctttttaGCAATTGTATTCTTATGCC : 461001 134 : leValPheTyrSerPheLeuProLeuTrpProGlnIleLeuSerThrValLeuProIl : 152 !!:!!.!. !:!!!!.:!!|||! !! !|||!:!|||!!!:!!! !||| !! ! euIleMetIleAlaLeuIleProTyrLeuProArgIlePheAlaIleValThrHisGl 461002 : TAATAATGATCGCGTTAATTCCGTATTTGCCGCGGATCTTCGCGATTGTGACGCATCA : 461058 153 : eAsnValSerGlnThrGlnArgIleMetLeuIleMetThrGluTyrPheValAspGln : 171 ||| !!!!!:: !! !!:!||| !:!!|||:!! |||||| !||||||!!. nAsnArgThrArgProLeuLysIleProIleIleVal---GluTyrHisValAspHis 461059 : GAACAGAACTCGTCCGTTGAAAATACCGATCATCGTG---GAGTATCACGTGGATCAT : 461112 172 : GluArgTyrPheTyrLeuLeuLeuLeuHisIleAsnThrAlaThrTyrIleGlyLeuI : 191 .!...!|||||| !!|||:!!:!!|||||||||||| !..! !!:!||||||!!! AsnGluTyrPheAspLeuIleIleLeuHisIleAsnPheCysHisPheIleGlyPheC 461113 : AACGAGTACTTCGATCTGATCATATTACACATTAACTTCTGCCACTTTATCGGCTTCT : 461172 192 : leValAlaIleAlaThrGlyThrValLeuLeuGlyCysIleIleHisAlaCysGlyLe : 210 !|||!.!|||:!!.!!! !..!..! !|||! ! ! ! !||| !|||..!|| ysValValIleSerAlaGluValThrAsnLeuValLeuAlaLysHisIleCysSerLe 461173 : GCGTTGTTATATCTGCTGAAGTGACAAATTTGGTACTTGCGAAACACATTTGCTCGTT : 461229 211 : uPheSerIle : 213 ||||..!:!! uPheAspLeu 461230 : GTTCGATCTT : 461240 vulgar: CbirOr352PSE 113 213 . KQ414815.1 460943 461240 + 115 M 51 153 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 460944 461240 115 + . gene_id 2 ; sequence CbirOr352PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 460944 461240 . + . KQ414815.1 exonerate:protein2genome:local exon 460944 461240 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 460944 461240 115 + . alignment_id 2 ; Query CbirOr352PSE ; Align 460944 114 153 ; Align 461097 166 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr352PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 131 -> 222 Target range: 448052 -> 448322 132 : GlyIleValPheTyrSerPheLeuProLeuTrpProGlnIleLeuSerThrValLeuP : 151 ..!:!!:!! !!:!!!!!!.:!! !!!! ! !......|||... ::::!!| SerLeuIleSerPheThrLeuValGluPheValValHisPheLeuAspIleLeuMetP 448053 : TCTTTAATTAGCTTTACCTTGGTTGAGTTCGTGGTAcattttctcgatattttaATGC : 448110 152 : roIleAsnValSerGlnThrGlnArgIleMetLeuIleMetThrGluTyrPheValAs : 170 ||!!:||||||||| |||!:!!.! :!:! !.!!:!:! !:!!! !||| !|| roMetAsnValSer---ThrArgHisGluLeuProPheLeuIleGlnCysPheCysAs 448111 : CAATGAACGTATCT---ACACGGCACGAGCTACCCTTCCTAATTCAATGTTTCTGTGA : 448164 171 : pGlnGluArgTyrPheTyrLeuLeuLeuLeuHisIleAsnThrAlaThrTyrIleGly : 189 ||||!!:!:!!:!|||:!!! !:!!|||:!! !:!:! !..! !||| !:!:||| pGlnAspLysPhePheHisTyrIleLeuValPheLeuIleValLeuThrIleLeuGly 448165 : TCAAGATAAATTCTTCCACTATATATTAGTTTTCTTGATCGTTCTCACTATTTTGGGT : 448221 190 : LeuIleValAlaIleAlaThrGlyThrValLeuLeuGlyCysIleIleHisAlaCysG : 209 !! !|||!.!:!!|||||| !|||..!! !||| !! !! ! !|||..!|||| GlySerValValLeuAlaThrThrThrThrTyrLeuIlePheSerGlnHisCysCysG 448222 : GGAAGTGTGGTATTAGCCACTACAACGACTTACTTGATATTCAGTCAACATTGTTGTG : 448281 210 : lyLeuPheSerIleAlaSerTyrArgIleLysGlnAlaMet : 222 ||||||||!.!||||||.!!!! ..!|||! ! |||||| lyLeuPheLysIleAlaGly***GluIleMetThrAlaMet 448282 : GATTGTTCAAAATTGCAGGGTAAGAAATTATGACTGCTATG : 448322 vulgar: CbirOr352PSE 131 222 . KQ414815.1 448052 448322 + 113 M 24 72 G 1 0 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448053 448322 113 + . gene_id 3 ; sequence CbirOr352PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448053 448322 . + . KQ414815.1 exonerate:protein2genome:local exon 448053 448322 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 448053 448322 113 + . alignment_id 3 ; Query CbirOr352PSE ; Align 448053 132 72 ; Align 448125 157 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr345 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 179 Query range: 283 -> 387 Target range: 458089 -> 458705 284 : GluValPheGlnThrThrLeuLeuArgGlyAsnValGluGluIleLeuLeuHisLeuI : 303 :!!:!!.!!:!! !..!:!! !! !! !|||:!!:!!|||:!:||| ! !:!!: GlnLeuLeuGluGluValIleAlaMetGluAsnMetLysGluLeuLeuAlaAlaMetL 458090 : CAGTTACTCGAAGAGGTTATAGCAATGGAAAACATGAAGGAGCTGCTAGCTGCTATGC : 458147 304 : lePheAlaSerAlaIleValLeuTyrThrPheValAlaAsnTyrThrGlyGluGluIl : 322 !!.!! !! !::! ! !!||||||||||||:!!|||||||||.!!|||:!! :! euLeuMetIleSerHisPheLeuTyrThrPheLeuAlaAsnTyrAlaGlyGlnIleVa 458148 : TACTCATGATCAGTCACTTCCTTTACACATTTCTGGCGAACTATGCCGGGCAAATCGT : 458204 323 : eMetHisHisTyrAsnAspMetPheSerMet{Al} >>>> Target Intron 1 : 333 :||| !!||| !! !|||:!:|||..!! {.!} 304 bp lMetAspHisSerIleAspValPheAspLys{Th}++ 458205 : GATGGATCACAGTATCGACGTTTTCGATAAA{AC}gt..................... : 458241 334 : >>>> {a}TyrSerValGlnTrpTyrThrAlaProIleArgIleGlnArgLeuIleL : 350 {!}|||! !:!!! !|||||| !||||||:!!|||||||||!:!! !:!!| ++{r}TyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuL 458242 : ....ag{A}TACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCT : 458592 351 : euPheLeuLeuGlnArgSerCysLysValTyrArgLeuLysIleAlaGlyIlePheIl : 369 |||||:!!! !:!!|||||| !:!||| ! !||| !!: !|||!!:.!!|| euPheIleSerGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIl 458593 : TGTTCATATCAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCAT : 458649 370 : eThrSerLeuGluGlyPheAlaSerLeuSerThrAlaSerLeuSerTyrPheThr : 387 |.!.|||...||| ||||||:!!:!!!!!! !:!!!!!||| :::|||::: eAlaSerPheGluPhePheAlaThrValThrLysSerTrpLeu***HisPheSer 458650 : TGCatccttcgaatttttcgccaCGGTAACAAAATCTTGGCtatgacatttttct : 458705 vulgar: CbirOr345 283 387 . KQ414815.1 458089 458705 + 179 M 49 147 S 0 2 5 0 2 I 0 300 3 0 2 S 1 1 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458090 458705 179 + . gene_id 1 ; sequence CbirOr345 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 458090 458238 . + . KQ414815.1 exonerate:protein2genome:local exon 458090 458238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 458239 458240 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 458239 458542 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 458541 458542 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458543 458705 . + . KQ414815.1 exonerate:protein2genome:local exon 458543 458705 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458090 458705 179 + . alignment_id 1 ; Query CbirOr345 ; Align 458090 284 147 ; Align 458544 334 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr345 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 123 -> 213 Target range: 457144 -> 457411 124 : IleLeuThrLeuPheAlaValCysCysValIleIleIleThrValLeuProPheLeuP : 143 !!::!!|||:!!! !.!! !||| !!!.!:!::!!||||||..!|||! !.!!!!!| MetIleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheP 457145 : ATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTC : 457202 144 : roTrpIleLeuGlyThrPheLeuLeuAlaAsnGluSerArgProPheHisAsnMetLe : 162 || :!!|||! !! ! ! :!!! ! !|||||||||||||||! ! .!.:!:! roIleLeuLeuAspIleValValProLeuAsnGluSerArgProCys---GluLeuTy 457203 : CGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGT---GAGTTATA : 457256 163 : uIleValThrGluTyrPheValAspLysGluLysHisPheTyrLeuIleIleLeuHis : 181 !:!!..!.!!|||||||||||||||! !:!!|||:!!.!.:!!! !|||||| !||| rLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHis 457257 : CCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCAC : 457313 182 : ThrTyrAlaSerIleTyrIleGlyValThrAlaMetValGlyGlyGlyMetMetLeuA : 201 ! ! !.!!!!!:!! |||!.!!.!|||.!!:!:..!!.!..!! ! :!:||| IleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuI 457314 : ATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTA : 457373 202 : laSerTyrLeuLysHisIleCysGlyLeuPheSerIle : 213 !!!! !!:!! !|||:!!||||||||||||!.!:!! leThrAsnValLeuHisValCysGlyLeuPheLysLeu 457374 : TAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr345 123 213 . KQ414815.1 457144 457411 + 141 M 35 105 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457145 457411 141 + . gene_id 2 ; sequence CbirOr345 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457145 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457145 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457145 457411 141 + . alignment_id 2 ; Query CbirOr345 ; Align 457145 124 105 ; Align 457250 160 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr345 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 157 -> 254 Target range: 478617 -> 479212 158 : PheHisAsnMetLeuIleValThrGluTyrPheValAspLysGluLysHisPheTyrL : 177 |||...... :!! !..!||||||||||||:!!|||::::::|||:::||| . PheGluThrSerMetGlyThrThrGluTyrPheIleAspGluLysLysTyrPheIleP 478618 : tttgaaacatcaATGGGCACCACGGAATACTTCATTGacgagaagaaatatttcatat : 478675 178 : euIleIleLeuHisThrTyrAlaSerIleTyrIleGlyValThrAlaMetValGlyGl : 196 ..|||||| |||..!||| !|||:!: !!: !!.!|||!.! |||!.! heIleIleSerHisValTyrLeuSerLeuIleMetHisAlaThrValTyrValAlaTh 478676 : ttattatttctcacGTGTACCTGTCGTTGATAATGCATGCAACTGTATACGTAGCCAC : 478732 197 : yGlyMetMetLeuAlaSerTyrLeuLysHisIleCysGlyLeuPheSerIleAlaSer : 215 !! ! ! :!! !! !!:::!! !|||! ! !||||||!:!!:!||| !!!! rGluSer***ValIleMetTrpMetValHisThrIleGlyLeuTyrAsnIleIleArg 478733 : CGAGTCGTGAGTGATTATGTGGATGGTGCATACTATCGGCTTGTATAATATCATAAGG : 478789 216 : TyrArgMet >>>> Target Intron 1 >>>> GluGlnThrIleMetLeuAs : 225 |||!.!..! 304 bp ... ! !|||... !! TyrAsnGln-- +-SerTyrArgIleGlnLysIl 478790 : TATAATCAGca.........................acAGTTATCGAATTCAAAAAAT : 479123 226 : nSerHisGluLysAlaAsnGlyArgAsnGluMetGluMetAsnLysLysLeuArgHis : 244 ! !!.!:!! ! !|||.!!||| .!.! !.!.!!:!!.||| :!!! !||| eValArgLysAspLeuAsnSerArgLeuAsnThrAsnIleLysLysGlyValIleHis 479124 : CGTTCGTAAGGACTTGAACAGTCGTTTGAATACGAACATTAAAAAAGGTGTGATACAT : 479180 245 : AlaValAspValHisArgThrAlaIleGlu : 254 |||:!!! !..!|||||||||||||||:!! AlaIleAlaThrHisArgThrAlaIleGln 479181 : GCCATAGCTACTCATAGAACAGCAATACAG : 479212 vulgar: CbirOr345 157 254 . KQ414815.1 478617 479212 + 112 M 61 183 5 0 2 I 0 300 3 0 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478618 479212 112 + . gene_id 3 ; sequence CbirOr345 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 478618 478800 . + . KQ414815.1 exonerate:protein2genome:local exon 478618 478800 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 478801 478802 . + . intron_id 1 ; splice_site "CA" KQ414815.1 exonerate:protein2genome:local intron 478801 479104 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 479103 479104 . + . intron_id 0 ; splice_site "AC" KQ414815.1 exonerate:protein2genome:local cds 479105 479212 . + . KQ414815.1 exonerate:protein2genome:local exon 479105 479212 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478618 479212 112 + . alignment_id 3 ; Query CbirOr345 ; Align 478618 158 183 ; Align 479105 219 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr345 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 327 -> 375 Target range: 490182 -> 490326 328 : AspMetPheSerMetAlaTyrSerValGlnTrpTyrThrAlaProIleArgIleGlnA : 347 :!!!!:.!!!:!! ..! !!||||||.!.|||||||||||||||||| !||||||! AsnIleLeuAsnArgCysAsnSerValAsnTrpTyrThrAlaProIleAlaIleGlnL 490183 : AACATACTTAATAGATGCAACAGCGTGAATTGGTACACGGCTCCAATTGCCATACAAA : 490240 348 : rgLeuIleLeuPheLeuLeuGlnArgSerCysLysValTyrArgLeuLysIleAlaGl : 366 :!|||:!:|||.!!:!!:!!|||!.!!!! ::! !! ! !:!!! !:!! !|| ysLeuLeuLeuIleIleMetGlnAsnThrIleArgAsnSerSerIleThrLeuPheGl 490241 : AATTGCTGTTGATCATTATGCAAAATACTATACGAAATTCTTCAATAACACTCTTCGG : 490297 367 : yIlePheIleThrSerLeuGluGlyPhe : 375 |!!:!:!|||:!!|||!!!!!:|||||| yMetTyrIleSerSerPheAspGlyPhe 490298 : AATGTATATATCGTCTTTCGATGGTTTC : 490326 vulgar: CbirOr345 327 375 . KQ414815.1 490182 490326 + 105 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 490183 490326 105 + . gene_id 4 ; sequence CbirOr345 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 490183 490326 . + . KQ414815.1 exonerate:protein2genome:local exon 490183 490326 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 490183 490326 105 + . alignment_id 4 ; Query CbirOr345 ; Align 490183 328 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr359 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 137 -> 212 Target range: 448073 -> 448298 138 : IleGlnIleAlaIleProTyrLeuAspAspValThrProIleAsnGlyCysArgLeuH : 157 :!!:!!.!!!.!:!! :::|||||| :::! !|||!!:|||! !! !! !! !| ValGluPheValValHisPheLeuAspIleLeuMetProMetAsnValSerThrArgH 448074 : GTTGAGTTCGTGGTAcattttctcgatattttaATGCCAATGAACGTATCTACACGGC : 448131 158 : isArgLeuTyrIleAlaValGluTyrPheIleAspGlnGluLysTyrTyrTyrValIl : 176 ||..!||| !.!! !:!!:!!! !||| !||||||!!:|||!:!!:!:!! !|| isGluLeuProPheLeuIleGlnCysPheCysAspGlnAspLysPhePheHisTyrIl 448132 : ACGAGCTACCCTTCCTAATTCAATGTTTCTGTGATCAAGATAAATTCTTCCACTATAT : 448188 177 : eLeuIleHisMetAsnValAlaLeuPheIleGlyThrLeuThrValIleAlaThrGly : 195 ||||:!! !:!!! !||| ! !.!!:!:||| ! !..!|||:!!|||||| ! eLeuValPheLeuIleValLeuThrIleLeuGlyGlySerValValLeuAlaThrThr 448189 : ATTAGTTTTCTTGATCGTTCTCACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACA : 448245 196 : ThrLeuMetLeuMetPhePheGlnHisAlaCysGlyMetPheLysIleAla : 212 ||| ! |||!!:||| !||||||..!||||||:!!|||||||||||| ThrThrTyrLeuIlePheSerGlnHisCysCysGlyLeuPheLysIleAla 448246 : ACGACTTACTTGATATTCAGTCAACATTGTTGTGGATTGTTCAAAATTGCA : 448298 vulgar: CbirOr359 137 212 . KQ414815.1 448073 448298 + 153 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448074 448298 153 + . gene_id 1 ; sequence CbirOr359 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448074 448298 . + . KQ414815.1 exonerate:protein2genome:local exon 448074 448298 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448074 448298 153 + . alignment_id 1 ; Query CbirOr359 ; Align 448074 138 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr359 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 144 -> 211 Target range: 485725 -> 485926 145 : LeuAspAspValThrProIleAsnGlyCysArgLeuHisArgLeuTyrIleAlaValG : 164 |||||| !:!!! !|||:!:||| ! !|||! !!..! !:!! !||| ! !| LeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnSerG 485726 : CTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACTCGG : 485783 165 : luTyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnValAl : 183 ||:!!|||:!!||||||:!!||||||!:!||| !||| ! !|||:!: !:!! luHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLeuPh 485784 : AACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCTCTT : 485840 184 : aLeuPheIleGlyThrLeuThrValIleAlaThrGlyThrLeuMetLeuMetPhePhe : 202 !:!!.!!||||||.!!:!!..!:!!:!!::!||| |||:::::: !.!..!. eValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIleIle 485841 : CGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATAATA : 485897 203 : GlnHisAlaCysGlyMetPheLysIle : 211 ||||||.!!||||||:!!!:!! !||| GlnHisThrCysGlyLeuTyrThrIle 485898 : CAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr359 144 211 . KQ414815.1 485725 485926 + 135 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485726 485926 135 + . gene_id 2 ; sequence CbirOr359 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485726 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485726 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485726 485926 135 + . alignment_id 2 ; Query CbirOr359 ; Align 485726 145 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr359 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 144 -> 211 Target range: 482034 -> 482235 145 : LeuAspAspValThrProIleAsnGlyCysArgLeuHisArgLeuTyrIleAlaValG : 164 ||||||! !:!!..!|||:!!|||! ! !||| !|||!:!!!! :!!:!!:!!| LeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMetG 482035 : CTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGG : 482092 165 : luTyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnValAl : 183 |||||||||||||||||:!!||||||! ! !!||| !.!!|||..! !!:! luTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSe 482093 : AGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTC : 482149 184 : aLeuPheIleGlyThrLeuThrValIleAlaThrGlyThrLeuMetLeuMetPhePhe : 202 !!!!.!!:!!! !.!! !! !:!!:!!!.!! !! !||||||!!::!!|||!::.!! rPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeu 482150 : CTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTT : 482206 203 : GlnHisAlaCysGlyMetPheLysIle : 211 :!!||||||....!!:!!|||! :!! GluHisAlaAlaSerLeuPheThrLeu 482207 : GAACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: CbirOr359 144 211 . KQ414815.1 482034 482235 + 128 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482035 482235 128 + . gene_id 3 ; sequence CbirOr359 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482035 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 482035 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482035 482235 128 + . alignment_id 3 ; Query CbirOr359 ; Align 482035 145 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr359 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 161 -> 221 Target range: 478635 -> 478815 162 : AlaValGluTyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetA : 181 .!!..!|||||||||||||||::::::||||||::: |||::: |||:!! ThrThrGluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValT 478636 : ACCACGGAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGT : 478693 182 : snValAlaLeuPheIleGlyThrLeuThrValIleAlaThrGlyThrLeuMetLeuMe : 200 !!:!!:!!|||.!.!!: !.!! !..! !:!!||||||! !:!!! !:!!:!!|| yrLeuSerLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMe 478694 : ACCTGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTAT : 478750 201 : tPhePheGlnHisAlaCysGlyMetPheLysIleAlaCysTyrArgIleGluHisAla : 219 |!::.!. !|||.!! !|||:!!!:!!!.||| ! ! |||!.! :!!... ! tTrpMetValHisThrIleGlyLeuTyrAsnIleIleArgTyrAsnGlnGlnArgLeu 478751 : GTGGATGGTGCATACTATCGGCTTGTATAATATCATAAGGTATAATCAGCAAAGATTG : 478807 220 : IleGlu : 221 |||!!: IleAsp 478808 : ATCGAT : 478815 vulgar: CbirOr359 161 221 . KQ414815.1 478635 478815 + 101 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478636 478815 101 + . gene_id 4 ; sequence CbirOr359 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478636 478815 . + . KQ414815.1 exonerate:protein2genome:local exon 478636 478815 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478636 478815 101 + . alignment_id 4 ; Query CbirOr359 ; Align 478636 162 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr343PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 161 -> 268 Target range: 485764 -> 486561 162 : ThrValHisIleMetArgGluTyrPheIleAspGlnGluLysTyrTyrTyrCysIleL : 181 |||:!!! !|||! !|||:!!|||:!!||||||:!!||||||!:!||| !||| ThrIleProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleA 485765 : ACGATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTG : 485822 182 : euLeuHisPheAspValSerIlePheIleGlyThrLeuValThrThrAlaThrGlyTh : 200 ! !||| !!! !:!!! !:!!.!!||||||.!!:!!||| ! !::!||| laAlaHisValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIl 485823 : CAGCACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaat : 485879 201 : rLeuLeuPheGlyCysIleLysTyrIleCysGlyIlePheArgIleAla{Se} >>> : 217 |||:::.....! |||:!!:!!! !||||||:!:!:!! !|||!.!{.!} eLeuIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIleVal{Gl}++ 485880 : attaattatggCGATAATACAGCACACCTGTGGTTTGTATACAATCGTT{GG}gt... : 485934 218 : > Target Intron 1 >>>> {r}TyrArgIleAspGlnAlaMetGlnThrAlaT : 228 476 bp {!}||||||||||||!!..!!.!. .!! !! ++{y}TyrArgIleAspHisThrPheValAlaAsnI 485935 : ......................ag{C}TATCGTATAGATCACACGTTTGTTGCAAACA : 486439 229 : hrLeuHisHisAlaValLeuSerAsnAsnPheIleLeuTyrLysLysIleValArgAl : 247 !! ! ! !:!! ! !..!!..!.. !!:!!:!!:!!!:!||||||||| ! leProGlyLeuSerProAlaGluArgArgValLeuIleHisArgLysIleValSerLe 486440 : TACCAGGACTTTCTCCTGCGGAAAGGAGAGTTCTAATTCACAGAAAAATAGTCTCGCT : 486496 248 : aIleAspIleHisArgLysAlaValLysSerValIleValLeuSerLeuCysAspIle : 266 !:!::!!:!:|||!:!!:!!.! !:!!! !||| ! !! !..!:!! !! !:!! uValAsnLeuHisLysArgValLysGluLeuValSerCysTyrGlnValIleValLeu 486497 : CGTGAATTTGCACAAAAGAGTCAAGGAGTTAGTATCCTGTTATCAAGTAATTGTTCTT : 486553 267 : IleThr : 268 :!!||| LeuThr 486554 : TTAACC : 486561 vulgar: CbirOr343PSE 161 268 . KQ414815.1 485764 486561 + 153 M 55 165 S 0 2 5 0 2 I 0 472 3 0 2 S 1 1 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485765 486561 153 + . gene_id 1 ; sequence CbirOr343PSE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 485765 485931 . + . KQ414815.1 exonerate:protein2genome:local exon 485765 485931 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 485932 485933 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 485932 486407 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 486406 486407 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 486408 486561 . + . KQ414815.1 exonerate:protein2genome:local exon 486408 486561 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485765 486561 153 + . alignment_id 1 ; Query CbirOr343PSE ; Align 485765 162 165 ; Align 486409 218 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr343PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 134 -> 214 Target range: 467653 -> 467890 135 : IleSerIleAlaCysLeuLeuProPhePheProArgIleLeuArgThrPheThrSerI : 154 |||! ! !!.! ||||||||||||!:: |||...... ||||||: IleIleAlaValIleLeuLeuProPheTyrAspIleIlePheAsnIleValThrSerL 467654 : ATTATAGCCGTTATATTATTACCATTCTacgatataattttcaatattgtaaCATCGT : 467711 155 : leAsnValSerGlnGluHisPheThrValHisIleMetArgGluTyrPheIleAspGl : 173 !:|||||||||!::||| .!! !:!!! ! ! ! !|||||||||! !|||:! euAsnValSerArgGlu---IleGluLeuProAlaAspLeuGluTyrPheThrAspGl 467712 : TGAACGTATCACGTGAG---ATTGAATTACCTGCTGATCTTGAGTACTTTACAGACGA : 467765 174 : nGluLysTyrTyrTyrCysIleLeuLeuHisPheAspValSerIlePheIleGlyThr : 192 !...||||||||| ! !! !||||||||| ! ! ! ! ! !.!!! !|||..! uSerLysTyrTyrProIleLysLeuLeuHisValValSerHisAlaIleThrGlyVal 467766 : AAGCAAGTATTATCCTATTAAACTGTTACATGTGGTTAGTCATGCTATCACTGGAGTG : 467822 193 : LeuValThrThrAlaThrGlyThrLeuLeuPheGlyCysIleLysTyrIleCysGlyI : 212 !|||..!! ! !! !! !!:! !|||!!. !! !:!!:!!||| !|||!.!: ThrValValIlePheIleAspSerThrLeuLeuIlePheLeuGlnTyrSerCysAlaL 467823 : ACGGTTGTGATTTTCATTGATAGTACGTTGTTGATATTCCTCCAATATTCTTGTGCGC : 467882 213 : lePheArg : 214 !!|||!:! euPheLys 467883 : TCTTCAAA : 467890 vulgar: CbirOr343PSE 134 214 . KQ414815.1 467653 467890 + 100 M 25 75 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 467654 467890 100 + . gene_id 2 ; sequence CbirOr343PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 467654 467890 . + . KQ414815.1 exonerate:protein2genome:local exon 467654 467890 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 467654 467890 100 + . alignment_id 2 ; Query CbirOr343PSE ; Align 467654 135 75 ; Align 467729 161 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr339 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 132 -> 213 Target range: 485683 -> 485926 133 : SerLeuSerAlaLeuLeuLeuLysGlnCysTrpSerSerIleLeuAspAsnIleValT : 152 |||||| !!.!|||:!!||| !! ! !:!||||||||||||! !:!::!! SerLeuLeuValLeuIleLeuGlyIlePheAsnAsnSerIleLeuAspIleLeuIleP 485684 : TCGTTACTTGTGCTGATTCTTGGTATATTTAACAACAGTATTCTGGACATTTTGATTC : 485741 153 : yrAsnAsnIleSerArgProTyrHisLeuGlnIleLysMetGluTyrPheValAsnGl : 171 ! ||| !!!!|||||| :!!! |||!!. !|||:!!||||||:!!|| roLeuAsnTyrThrArgProArgThrIleProIleAsnSerGluHisPheValAspGl 485742 : CTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACTCGGAACATTTTGTCGATCA : 485798 172 : nLysLysTyrPheTyrPheIleLeuPheHisLeuAsnIleAlaIleCysIleGlyIle : 190 |:!!|||||||||||| !||| ! |||:!! !:!! !:!! !|||||| nGlnLysTyrPheTyrProIleAlaAlaHisValValLeuPheValIleIleGlyAla 485799 : GCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCTCTTCGTCATTATTGGCGCG : 485855 191 : IleIleThrAlaAlaThrGlyThrMetPheIleAlaTyrPheGlnTyrThrCysGlyM : 210 |||:!! ! !::!||| :::...:::||| .!.|||:!!|||||||||: IleValLeuLeuSerThrGluIleLeuIleMetAlaIleIleGlnHisThrCysGlyL 485856 : ATAGTATTACTCAGCaccgaaatattaattatggCGATAATACAGCACACCTGTGGTT : 485915 211 : etPheMetIle : 213 !!!:!! ||| euTyrThrIle 485916 : TGTATACAATC : 485926 vulgar: CbirOr339 132 213 . KQ414815.1 485683 485926 + 150 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485684 485926 150 + . gene_id 1 ; sequence CbirOr339 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485684 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485684 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485684 485926 150 + . alignment_id 1 ; Query CbirOr339 ; Align 485684 133 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr339 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 330 -> 384 Target range: 458543 -> 458705 331 : TyrAsnValGlnTrpTyrLysAlaProLeuHisIleGlnLysIleIleLeuPheLeuL : 350 ||| :!!! !||||||:::|||||||||!..||||||||| !:!!||||||:!!! TyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleS 458544 : TACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATAT : 458601 351 : euGlnArgGlyValLysSerPheThrLeuThrIleGlyGlyLeuPheAspAlaSerPh : 369 !:!!|||.!! !!:! ! !:!!||| !!!: !|||:!!.!! !|||||||| erGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPh 458602 : CAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatcctt : 458658 370 : eGluCysPheAlaThrLeuValLysAlaSerValSerTyrPheThr : 384 |||| |||||||||:!!..!|||:!!!!!::: :::|||::: eGluPhePheAlaThrValThrLysSerTrpLeu***HisPheSer 458659 : cgaatttttcgccaCGGTAACAAAATCTTGGCtatgacatttttct : 458705 vulgar: CbirOr339 330 384 . KQ414815.1 458543 458705 + 118 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458544 458705 118 + . gene_id 2 ; sequence CbirOr339 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 458544 458705 . + . KQ414815.1 exonerate:protein2genome:local exon 458544 458705 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458544 458705 118 + . alignment_id 2 ; Query CbirOr339 ; Align 458544 331 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr339 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 124 -> 213 Target range: 475503 -> 475770 125 : IleLeuThrSerPheGlyValLeuSerLeuSerAlaLeuLeuLeuLysGlnCysTrpS : 144 |||::!||| !.!.! ! !! !!!!:!!! !.!!:!!:!!||| ! ! !! !| IleValThrValLeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerS 475504 : attgtTACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGT : 475561 145 : erSerIleLeuAspAsnIleValTyrAsnAsnIleSerArgProTyrHisLeuGlnIl : 163 ||!.!|||||||||::!:!::!! ! ||| ||||||||| ! ! !! !|| erLysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIl 475562 : CTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAt : 475618 164 : eLysMetGluTyrPheValAsnGlnLysLysTyrPheTyrPheIleLeuPheHisLeu : 182 |::::::|||||||||:::|||:!!:!!||||||||||||.!.! !:!!.!!:!!! ! eArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGln 475619 : acgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAG : 475675 183 : AsnIleAlaIleCysIleGlyIleIleIleThrAlaAlaThrGlyThrMetPheIleA : 202 !.!:!!.!!||| !:!: ! !! !! !!.!||||||! !.!!!!:|||! ! ThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrM 475676 : ACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCA : 475735 203 : laTyrPheGlnTyrThrCysGlyMetPheMetIle : 213 !!::!!.|||:!! ! ...:::||| ||| etTrpLeuGlnHisCysIleSerLeuPheGluIle 475736 : TGTGGTTGCAACATTGCATaagtttatttgaaatt : 475770 vulgar: CbirOr339 124 213 . KQ414815.1 475503 475770 + 115 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475504 475770 115 + . gene_id 3 ; sequence CbirOr339 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475504 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475504 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475504 475770 115 + . alignment_id 3 ; Query CbirOr339 ; Align 475504 125 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr336 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 126 -> 216 Target range: 448031 -> 448298 127 : LeuThrIleValAlaIleTyrAsnLeuAlaCysPheIleValMetLeuCysTrpProT : 146 :::::::::||| ! !! ::!||| ! !!|||! !:!!:!: !! ! ! !: IleSerValValPheAlaLeuSerLeuIleSerPheThrLeuValGluPheValValH 448032 : atttcagtGGTGTTTGCCTTGTCTTTAATTAGCTTTACCTTGGTTGAGTTCGTGGTAc : 448089 147 : yrIleLeuAspIleIleMetProLysAsnGluThrTyrValGlnArgPheIleValHi : 165 ::...|||||||||:::||||||! !|||! !:!! ..!!:!!.! :!! ! isPheLeuAspIleLeuMetProMetAsnValSer---ThrArgHisGluLeuProPh 448090 : attttctcgatattttaATGCCAATGAACGTATCT---ACACGGCACGAGCTACCCTT : 448143 166 : sMetThrLysAspPheAlaIleGlnGluLysTyrPheTyrLeuPheLeuLeuHisLeu : 184 !:!:! !:!! !|||..! !|||!!:|||!:!|||:!!! !.!.|||:!! !||| eLeuIleGlnCysPheCysAspGlnAspLysPhePheHisTyrIleLeuValPheLeu 448144 : CCTAATTCAATGTTTCTGTGATCAAGATAAATTCTTCCACTATATATTAGTTTTCTTG : 448200 185 : TyrValAlaSerAlaValGlyGlyValSerPheLeuAlaThrGlyThrMetMetLeuS : 204 !||| !!!! !:!!|||||| ! ! ! ||||||||| !|||! |||! IleValLeuThrIleLeuGlyGlySerValValLeuAlaThrThrThrThrTyrLeuI 448201 : ATCGTTCTCACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAACGACTTACTTGA : 448260 205 : erCysLeuLysHisIleCysGlyIleLeuArgIleAla : 216 !! ! !:!!||| !||||||:!:!!!!:!|||||| lePheSerGlnHisCysCysGlyLeuPheLysIleAla 448261 : TATTCAGTCAACATTGTTGTGGATTGTTCAAAATTGCA : 448298 vulgar: CbirOr336 126 216 . KQ414815.1 448031 448298 + 108 M 31 93 G 1 0 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448032 448298 108 + . gene_id 1 ; sequence CbirOr336 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448032 448298 . + . KQ414815.1 exonerate:protein2genome:local exon 448032 448298 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 448032 448298 108 + . alignment_id 1 ; Query CbirOr336 ; Align 448032 127 93 ; Align 448125 159 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr336 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 146 -> 215 Target range: 485722 -> 485926 147 : IleLeuAspIleIleMetProLysAsnGluThrTyrValGlnArgPheIleValHisM : 166 ||||||||||||:!:!!:||| !||| ! ||| ! ! !||| ||| ! ! IleLeuAspIleLeuIleProLeuAsnTyrThrArg---ProArgThrIleProIleA 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGT---CCGCGGACGATTCCTATAA : 485777 167 : etThrLysAspPheAlaIleGlnGluLysTyrPheTyrLeuPheLeuLeuHisLeuTy : 185 :!!:!! !!|||!.! !|||:!!||||||||||||! !.!! ! !|||:!! snSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValVa 485778 : ACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGT : 485834 186 : rValAlaSerAlaValGlyGlyValSerPheLeuAlaThrGlyThrMetMetLeuSer : 204 !:!! ! ! !:!!|||!.!:!! !!!.|||::!||| ::::::::::!! lLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAla 485835 : TCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCG : 485891 205 : CysLeuLysHisIleCysGlyIleLeuArgIle : 215 :!!:!!|||! !||||||:!:! !! !||| IleIleGlnHisThrCysGlyLeuTyrThrIle 485892 : ATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr336 146 215 . KQ414815.1 485722 485926 + 100 M 12 36 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485926 100 + . gene_id 2 ; sequence CbirOr336 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485926 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 485723 485926 100 + . alignment_id 2 ; Query CbirOr336 ; Align 485723 147 36 ; Align 485759 160 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr338 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 122 -> 213 Target range: 485653 -> 485926 123 : ThrSerIlePheArgThrPhePheLeuSerThrValProIleThrIleIleGlyGlnV : 142 !.!||||||.!! !..!.!!.!! ! !!:!!:!!! !:!: !|||:!!||| ! AsnSerIleIleAlaValIleIleGlyProSerLeuLeuValLeuIleLeuGlyIleP 485654 : AACAGTATTATTGCAGTAATTATCGGTCCATCGTTACTTGTGCTGATTCTTGGTATAT : 485711 143 : alLeuProAsnIlePheHisSerValLeuSerAsnAsnGluSerArgProHisAsnLe : 161 !! ! !!:!|||.!. !!! !:!!:!! !! ||| ! !!!||||||!..!..:! heAsnAsnSerIleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIl 485712 : TTAACAACAGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGAT : 485768 162 : uGlnIleThrMetGluTyrPheIleAspGlnGlnLysTyrPheTyrPheIleLeuPhe : 180 !! |||!.! !|||:!!|||:!!||||||||||||||||||||| !||| ! eProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAla 485769 : TCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCA : 485825 181 : HisLeuAsnThrAlaIleCysIleGlyIleIleThrThrAlaAlaValGlySerThrP : 200 |||:!! ! ! !:!! !|||||| |||..! ! !::!... . HisValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuI 485826 : CATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaa : 485885 201 : heIleAlaTyrPheGlnTyrAlaCysGlyMetPheMetIle : 213 ..:::||| .!.|||:!!.!!||||||:!!!:!! ||| leMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIle 485886 : ttatggCGATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr338 122 213 . KQ414815.1 485653 485926 + 128 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485654 485926 128 + . gene_id 1 ; sequence CbirOr338 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485654 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485654 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485654 485926 128 + . alignment_id 1 ; Query CbirOr338 ; Align 485654 123 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr338 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 330 -> 384 Target range: 458543 -> 458705 331 : TyrAsnValGlnTrpTyrLysAlaProLeuHisIleGlnLysIleIleLeuPheLeuL : 350 ||| :!!! !||||||:::|||||||||!..||||||||| !:!!||||||:!!! TyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleS 458544 : TACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATAT : 458601 351 : euGlnArgGlyValLysSerPheThrLeuThrIleGlyGlyLeuPheAspAlaSerPh : 369 !:!!|||.!! !!:! ! !:!!||| !!!: !|||:!!.!! !|||||||| erGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPh 458602 : CAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatcctt : 458658 370 : eGluCysPheAlaThrLeuValLysAlaSerValSerTyrPheThr : 384 |||| |||||||||:!!..!|||:!!!!!::: :::|||::: eGluPhePheAlaThrValThrLysSerTrpLeu***HisPheSer 458659 : cgaatttttcgccaCGGTAACAAAATCTTGGCtatgacatttttct : 458705 vulgar: CbirOr338 330 384 . KQ414815.1 458543 458705 + 118 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458544 458705 118 + . gene_id 2 ; sequence CbirOr338 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 458544 458705 . + . KQ414815.1 exonerate:protein2genome:local exon 458544 458705 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458544 458705 118 + . alignment_id 2 ; Query CbirOr338 ; Align 458544 331 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr338 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 132 -> 213 Target range: 481992 -> 482235 133 : ThrValProIleThrIleIleGlyGlnValLeuProAsnIlePheHisSerValLeuS : 152 :!!||| !||| !|||:!: !!!!.:!!! ! ! !:!!.!. !! !:!!:!! SerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValP 481993 : TCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTC : 482050 153 : erAsnAsnGluSerArgProHisAsnLeuGlnIleThrMetGluTyrPheIleAspGl : 171 !! ||||||!!!||| !!|||.!.!!!! !:!!:!!|||||||||||||||||||| roLeuAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGl 482051 : CTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCA : 482107 172 : nGlnLysTyrPheTyrPheIleLeuPheHisLeuAsnThrAlaIleCysIleGlyIle : 190 ||||||||||! !|||||| !||||||! ! !:!!.!! !:!!! ! ! nGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAla 482108 : GCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCA : 482164 191 : IleThrThrAlaAlaValGlySerThrPheIleAlaTyrPheGlnTyrAlaCysGlyM : 210 ! ! !! !!.!!.!:!!! !!!! !.!!:!! !!::.!!:!!:!!|||....!!: ThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerL 482165 : ACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCT : 482224 211 : etPheMetIle : 213 !!|||! :!! euPheThrLeu 482225 : TGTTCACCCTT : 482235 vulgar: CbirOr338 132 213 . KQ414815.1 481992 482235 + 115 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481993 482235 115 + . gene_id 3 ; sequence CbirOr338 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481993 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481993 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481993 482235 115 + . alignment_id 3 ; Query CbirOr338 ; Align 481993 133 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr338 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 144 -> 213 Target range: 475563 -> 475770 145 : AsnIlePheHisSerValLeuSerAsnAsnGluSerArgProHisAsnLeuGlnIleT : 164 !!.|||.!! !!|||:!!||| !! ||||||||||||||| ! ! !! !||| LysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleA 475564 : AAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtac : 475621 165 : hrMetGluTyrPheIleAspGlnGlnLysTyrPheTyrPheIleLeuPheHisLeuAs : 183 :::||||||||||||::::!!|||||||||||||||.!.! !:!!.!!:!!! !!. rgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnTh 475622 : gaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGAC : 475678 184 : nThrAlaIleCysIleGlyIleIleThrThrAlaAlaValGlySerThrPheIleAla : 202 !..!.!!||| !:!: ! !! !||| !!.!|||..!! !:!!! !|||! ! ! rValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMet 475679 : TGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATG : 475735 203 : TyrPheGlnTyrAlaCysGlyMetPheMetIle : 213 !::!!.|||:!!..! ...:::||| ||| TrpLeuGlnHisCysIleSerLeuPheGluIle 475736 : TGGTTGCAACATTGCATaagtttatttgaaatt : 475770 vulgar: CbirOr338 144 213 . KQ414815.1 475563 475770 + 108 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475564 475770 108 + . gene_id 4 ; sequence CbirOr338 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475564 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475564 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475564 475770 108 + . alignment_id 4 ; Query CbirOr338 ; Align 475564 145 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr342CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 123 -> 214 Target range: 475500 -> 475770 124 : GluMetLeuThrLeuMetLeuPheCysGlyIlePheIleCysGlyCysAsnThrPheL : 143 ...:::::!|||:!!:!!:!!!:! !||||||! ! !! ! !|||! AsnIleValThrValLeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheS 475501 : aatattgtTACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCT : 475558 144 : euProCysIleLeuHisValIleLeuProAlaAsnLysSerGlyProHisProSerLe : 162 ! !! |||||| !! !:!:|||||| !|||:!!||| !!||| ! !||||| erSerLysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLe 475559 : CGTCTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCT : 475615 163 : uHisIleMetThrGluTyrPheIleAspGlnGluLysTyrPheTyrLeuLeuValMet : 181 | ||| ||||||||||||::::!!:!!||||||||||||||| !|||!!: u---IleArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIle 475616 : G---AtacgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATC : 475669 182 : HisLysGluValAlaSerCysIleGlyThrThrAlaIleIleAlaThrGlyThrMetA : 201 :!!:!! |||.!!! ! !:!: ! !|||.!! !:!!||||||! !.!!!!: TyrGlnThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIleP 475670 : TATCAGACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATAT : 475729 202 : snMetIlePheLeuGlnHisAlaCysGlyMetPheMetIle : 214 !! !!:!::|||||||||..! ...:::||| ||| heThrMetTrpLeuGlnHisCysIleSerLeuPheGluIle 475730 : TTACCATGTGGTTGCAACATTGCATaagtttatttgaaatt : 475770 vulgar: CbirOr342CTE 123 214 . KQ414815.1 475500 475770 + 126 M 39 117 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475501 475770 126 + . gene_id 1 ; sequence CbirOr342CTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475501 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475501 475770 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 475501 475770 126 + . alignment_id 1 ; Query CbirOr342CTE ; Align 475501 124 117 ; Align 475618 164 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr342CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 141 -> 214 Target range: 485710 -> 485926 142 : PheLeuProCysIleLeuHisValIleLeuProAlaAsnLysSerGlyProHisProS : 161 ||| ! ! !!|||||| !!:!!:!::!!||| !||| ! !!! !!|||!.. ! PheAsnAsnSerIleLeuAspIleLeuIleProLeuAsnTyrThrArgProArg---T 485711 : TTTAACAACAGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGG---A : 485765 162 : erLeuHisIleMetThrGluTyrPheIleAspGlnGluLysTyrPheTyrLeuLeuVa : 180 !!:!!! !|||! :!!|||:!!|||:!!||||||:!!||||||||||||! !:!!!. hrIleProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAl 485766 : CGATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGC : 485822 181 : lMetHisLysGluValAlaSerCysIleGlyThrThrAlaIleIleAlaThrGlyThr : 199 ! ||| ! :!! ! ! !||||||.!!! !!.!:!!:!!::!||| aAlaHisValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIle 485823 : AGCACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaata : 485879 200 : MetAsnMetIlePheLeuGlnHisAlaCysGlyMetPheMetIle : 214 ::: ||| .!.:!!||||||.!!||||||:!!!:!! ||| LeuIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIle 485880 : ttaattatggCGATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr342CTE 141 214 . KQ414815.1 485710 485926 + 125 M 18 54 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485711 485926 125 + . gene_id 2 ; sequence CbirOr342CTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485711 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485711 485926 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 485711 485926 125 + . alignment_id 2 ; Query CbirOr342CTE ; Align 485711 142 54 ; Align 485765 161 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr342CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 121 -> 214 Target range: 481959 -> 482235 122 : AsnValGluMetLeuThrLeuMetLeuPheCysGlyIlePheIleCysGlyCysAsnT : 141 ||| ::: :::||| !:!::!!!:! ..!:!:!!.||| ! ! Asn***LysAsnIleThrAlaLeuIleTyrProSerValLeuIleLeuIleLeuCysH 481960 : aattagaaaaatattacagcGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCC : 482017 142 : hrPheLeuProCysIleLeuHisValIleLeuProAlaAsnLysSerGlyProHisPr : 160 !.!.! ! !! !:!!||| !!||||||:!!||| !|||:!!!!! !! !!||| isMetSerSerPheValLeuAspValIleValProLeuAsnGluThrArgThrHis-- 482018 : ATATGTCGAGTTTCGTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCAC-- : 482074 161 : oSerLeuHisIleMetThrGluTyrPheIleAspGlnGluLysTyrPheTyrLeuLeu : 179 ..!!!!! :!! ! !||||||||||||||||||:!!||||||! !!!!:!! -GlnPheProValSerMetGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIle 482075 : -CAATTTCCAGTATCAATGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATT : 482128 180 : ValMetHisLysGluValAlaSerCysIleGlyThrThrAlaIleIleAlaThrGlyT : 199 ..!.!.|||:!! ! !!:!!! ! !:!!! !.!!||| !|||:!!!.!! !! !| ThrPheHisGlnTrpPheSerPheLeuValValAlaThrIleIleValGlyIleGluT 482129 : ACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGA : 482188 200 : hrMetAsnMetIlePheLeuGlnHisAlaCysGlyMetPheMetIle : 214 ||:!!! !:!:!!:!::|||:!!||||||....!!:!!|||! :!! hrLeuIleValMetTrpLeuGluHisAlaAlaSerLeuPheThrLeu 482189 : CTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: CbirOr342CTE 121 214 . KQ414815.1 481959 482235 + 108 M 38 114 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481960 482235 108 + . gene_id 3 ; sequence CbirOr342CTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481960 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481960 482235 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 481960 482235 108 + . alignment_id 3 ; Query CbirOr342CTE ; Align 481960 122 114 ; Align 482074 161 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr346PI Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 289 -> 353 Target range: 128569 -> 128303 290 : PheSerValAlaTyrSerValGlnTrpTyrThrAlaProValArgIleGlnLysLeuI : 309 !!.!!! !!::!|||!!!!.!:!!||||||! !|||||||||::: ||||||:::: LeuThrPheSerTyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetL 128569 : TTAACATTTAGCTATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgC : 128512 310 : leLeuPheLeuLeuGluArgSerCysLysAsnTyrGlyValArgValGlyGlyLeuPh : 328 !!|||||||||:!!.!.|||! ! :!! ! ! !!:!!!:!:!! !..!||| ! euLeuPheLeuMetHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuVa 128511 : TACTGTTCCTCATGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGT : 128455 329 : eIleThrSerLeuGluGlyPheAlaThr >>>> Target Intron 1 >>>> L : 338 ! !.!!.!! !||| !!:!|||||| 74 bp : lAlaAlaGlyAsnGluLeuTyrAlaThr++ ++M 128454 : TGCCGCGGGTAACGAGTTGTACGCTACCgt.........................aga : 128351 339 : euPheThrThrSerIleSerTyrPheThrValMetTyrSerThrGln : 353 !! ! !|||.!!.!!|||||||||||||||:!:|||||| !||| etValGlnThrGlyPheSerTyrPheThrValLeuTyrSerLeuGln 128350 : TGGTGCAGACTGGTTTCTCCTACTTTACGGTTCTCTACTCGTTGCAA : 128304 vulgar: CbirOr346PI 289 353 . KQ414817.1 128569 128303 - 115 M 48 144 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128304 128569 115 - . gene_id 1 ; sequence CbirOr346PI ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128569 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128569 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128304 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128304 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128304 128569 115 - . alignment_id 1 ; Query CbirOr346PI ; Align 128570 290 144 ; Align 128352 338 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr339 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 330 -> 388 Target range: 128557 -> 128309 331 : TyrAsnValGlnTrpTyrLysAlaProLeuHisIleGlnLysIleIleLeuPheLeuL : 350 ||| !!.!:!!|||||||||||||||::: ||||||::::!!|||||||||: TyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheLeuM 128557 : TATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCCTCA : 128500 351 : euGlnArgGlyValLysSerPheThrLeuThrIleGlyGlyLeuPheAspAlaSerPh : 369 !!!!.||| !:!!:!! !!! !! !|||! !:!: !..!||| !!! !|||.!! etHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGlyAs 128499 : TGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGGTAA : 128443 370 : eGluCysPheAlaThr >>>> Target Intron 1 >>>> LeuValLysAlaS : 379 !|||! !:!|||||| 74 bp :!!|||:!!.!!. nGluLeuTyrAlaThr++ ++MetValGlnThrG 128442 : CGAGTTGTACGCTACCgt.........................agaTGGTGCAGACTG : 128339 380 : erValSerTyrPheThrValLeuTyrSer : 388 !! !!|||||||||||||||||||||||| lyPheSerTyrPheThrValLeuTyrSer 128338 : GTTTCTCCTACTTTACGGTTCTCTACTCG : 128310 vulgar: CbirOr339 330 388 . KQ414817.1 128557 128309 - 120 M 44 132 5 0 2 I 0 70 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128310 128557 120 - . gene_id 1 ; sequence CbirOr339 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128557 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128557 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128310 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128310 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128310 128557 120 - . alignment_id 1 ; Query CbirOr339 ; Align 128558 331 132 ; Align 128352 375 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr338 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 330 -> 388 Target range: 128557 -> 128309 331 : TyrAsnValGlnTrpTyrLysAlaProLeuHisIleGlnLysIleIleLeuPheLeuL : 350 ||| !!.!:!!|||||||||||||||::: ||||||::::!!|||||||||: TyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheLeuM 128557 : TATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCCTCA : 128500 351 : euGlnArgGlyValLysSerPheThrLeuThrIleGlyGlyLeuPheAspAlaSerPh : 369 !!!!.||| !:!!:!! !!! !! !|||! !:!: !..!||| !!! !|||.!! etHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGlyAs 128499 : TGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGGTAA : 128443 370 : eGluCysPheAlaThr >>>> Target Intron 1 >>>> LeuValLysAlaS : 379 !|||! !:!|||||| 74 bp :!!|||:!!.!!. nGluLeuTyrAlaThr++ ++MetValGlnThrG 128442 : CGAGTTGTACGCTACCgt.........................agaTGGTGCAGACTG : 128339 380 : erValSerTyrPheThrValLeuTyrSer : 388 !! !!|||||||||||||||||||||||| lyPheSerTyrPheThrValLeuTyrSer 128338 : GTTTCTCCTACTTTACGGTTCTCTACTCG : 128310 vulgar: CbirOr338 330 388 . KQ414817.1 128557 128309 - 120 M 44 132 5 0 2 I 0 70 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128310 128557 120 - . gene_id 1 ; sequence CbirOr338 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128557 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128557 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128310 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128310 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128310 128557 120 - . alignment_id 1 ; Query CbirOr338 ; Align 128558 331 132 ; Align 128352 375 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr340 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 123 -> 225 Target range: 130433 -> 130127 124 : IleIleThrSerPheThrAlaCysSerValLeuIleLeuSerLeuLeuProLeuLeuP : 143 |||||| !! !|||:!! !! !:!!||| !!!! !!!!|||! !:!!|||| IleIleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuP 130433 : ATTATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCC : 130376 144 : roCysIleLeuGlyThrPheLeuPheAlaAsnGluSerHisProLeuTyrAsnIleIl : 162 || |||||||||! !.!!! ! ! !!.!|||! !:!! !! ! ! :!!:! roGlnIleLeuGlyIleIleSerProLeuThrGluIleAsnThrAsnLysLeuLeuVa 130375 : CGCAAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAACAAATTACTCGT : 130319 163 : eGluThrGluTyrPheValAspGluGluLysThrPheTyrLeuThrLeuLeuHisThr : 181 !..!|||||||||||||||||| ! :!! ! !.!!||||||! ! !:!!|||.!! lArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAla 130318 : TCGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCG : 130262 182 : TyrAlaSerLeuTyrIleGlyValThrAlaThrValGlyGlyGlyLeuValValLeuT : 201 ! !:!!:!! !.!!|||||| ! !:!!.!!.!!! !:::::: ThrIleAlaIleMetCysSerValThrMetGlnIleSerSerAspIleLeuAsnAsnI 130261 : ACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaataaca : 130202 202 : hrTyrIleIleHisIleCysGlyLeuPheSerIleAlaArgTyrArgMetAsnGlnLe : 220 ::::::!!:|||||| !!|||:!!|||..!:!! ! !!!! ...|||::: lePheMetMetHisIleSerGlyMetPheGluValIleGly***ValGlnAsnLysTy 130201 : tatttatGATGCACATCAGTGGAATGTTCGAGGTAATTGGGTAAgttcaaaataaata : 130145 221 : uLeuIleLeuAsnIle : 225 !||||||:!! rLysAspLeuAsnLeu 130144 : taaggATTTGAATCTA : 130128 vulgar: CbirOr340 123 225 . KQ414817.1 130433 130127 - 112 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130128 130433 112 - . gene_id 1 ; sequence CbirOr340 ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130128 130433 . - . KQ414817.1 exonerate:protein2genome:local exon 130128 130433 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 130128 130433 112 - . alignment_id 1 ; Query CbirOr340 ; Align 130434 124 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr353 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 334 -> 395 Target range: 128560 -> 128303 335 : AlaTyrAsnIleProTrpTyrLeuAlaProLeuHisIleGlnLysLeuIleLeuPheL : 354 ::!||| ! ! !|||||| !||||||::: ||||||::::!!||||||| SerTyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheL 128560 : AGCTATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCC : 128503 355 : euLeuGlnArgAsnSerLysAlaPheThrLeuAsnPheHisGlyLeuLeuIleAlaSe : 373 ||:!!!!.||| !! !:!! !!! !! !|||!!..!. ! ..!|||:!! !|||.! euMetHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGl 128502 : TCATGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGG : 128446 374 : rLeuGluCysPheAlaSer >>>> Target Intron 1 >>>> LeuAlaSerA : 383 ! !|||! !:!|||!!! 74 bp :!!!.!..!. yAsnGluLeuTyrAlaThr++ ++MetValGlnT 128445 : TAACGAGTTGTACGCTACCgt.........................agaTGGTGCAGA : 128342 384 : laSerValSerTyrPheThrIleMetTyrSerValGln : 395 !!.!! !!||||||||||||:!!:!:||||||:!!||| hrGlyPheSerTyrPheThrValLeuTyrSerLeuGln 128341 : CTGGTTTCTCCTACTTTACGGTTCTCTACTCGTTGCAA : 128304 vulgar: CbirOr353 334 395 . KQ414817.1 128560 128303 - 107 M 45 135 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128304 128560 107 - . gene_id 1 ; sequence CbirOr353 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128560 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128560 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128304 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128304 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128304 128560 107 - . alignment_id 1 ; Query CbirOr353 ; Align 128561 335 135 ; Align 128352 380 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr345 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 123 -> 213 Target range: 130433 -> 130166 124 : IleLeuThrLeuPheAlaValCysCysValIleIleIleThrValLeuProPheLeuP : 143 |||:!! !!:!!|||:!! !!! :!!:!! !.!!..! !!|||! !.!!|||| IleIleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuP 130433 : ATTATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCC : 130376 144 : roTrpIleLeuGlyThrPheLeuLeuAlaAsnGluSerArgProPheHisAsnMetLe : 162 || |||||||||! !.!!! !! ! !!.!|||! !!.! !! :!!!!.:!:|| roGlnIleLeuGlyIleIleSerProLeuThrGluIleAsnThr---AsnLysLeuLe 130375 : CGCAAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATACT---AACAAATTACT : 130322 163 : uIleValThrGluTyrPheValAspLysGluLysHisPheTyrLeuIleIleLeuHis : 181 |:!! !|||||||||||||||||| ! :!! ! :!!.!!|||||||||! :!!||| uValArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHis 130321 : CGTTCGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCAC : 130265 182 : ThrTyrAlaSerIleTyrIleGlyValThrAlaMetValGlyGlyGlyMetMetLeuA : 201 .!! ! !:!!||| !.!!|||||| !...:!!.!!.!!! !!::::: AlaThrIleAlaIleMetCysSerValThrMetGlnIleSerSerAspIleLeuAsnA 130264 : GCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaata : 130205 202 : laSerTyrLeuLysHisIleCysGlyLeuPheSerIle : 213 :::::!! !|||||| !!|||:!!|||..!:!! snIlePheMetMetHisIleSerGlyMetPheGluVal 130204 : acatatttatGATGCACATCAGTGGAATGTTCGAGGTA : 130167 vulgar: CbirOr345 123 213 . KQ414817.1 130433 130166 - 113 M 34 102 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130167 130433 113 - . gene_id 1 ; sequence CbirOr345 ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130167 130433 . - . KQ414817.1 exonerate:protein2genome:local exon 130167 130433 . - . insertions 0 ; deletions 1 KQ414817.1 exonerate:protein2genome:local similarity 130167 130433 113 - . alignment_id 1 ; Query CbirOr345 ; Align 130434 124 102 ; Align 130332 159 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr352PSE Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 132 -> 213 Target range: 130406 -> 130166 133 : IleValPheTyrSerPheLeuProLeuTrpProGlnIleLeuSerThrValLeuProI : 152 :!!:!! !!:! !||||||! !:!! ||||||||||||.!!! !:!!! !|||: LeuLeuGlyPheValPheLeuGlnIleLeuProGlnIleLeuGlyIleIleSerProL 130406 : CTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAATTTTAGGCATAATTTCACCTC : 130349 153 : leAsnValSerGlnThrGlnArgIleMetLeuIleMetThrGluTyrPheValAspGl : 171 !!!.!! !! !.!.|||.!.!:! :!:|||:!! |||||||||||||||||| ! euThrGluIleAsnThrAsnLys---LeuLeuValArgThrGluTyrPheValAspTy 130348 : TAACCGAGATCAATACTAACAAA---TTACTCGTTCGAACCGAATACTTTGTCGACTA : 130295 172 : nGluArgTyrPheTyrLeuLeuLeuLeuHisIleAsnThrAlaThrTyrIleGlyLeu : 190 :!! !|||.!!||||||:!! !:!!||| !.!! !|||! ! !.!!:!! rLysAspTyrIleTyrLeuIleThrIleHisAlaThrIleAlaIleMetCysSerVal 130294 : CAAAGATTACATTTATCTAATCACGATCCACGCGACTATAGCAATAATGTGTAGTGTG : 130238 191 : IleValAlaIleAlaThrGlyThrValLeuLeuGlyCysIleIleHisAlaCysGlyL : 210 ! !:!! !|||::!!:!! !! ::: :::!!:||| ! !!|||: ThrMetGlnIleSerSerAspIleLeuAsnAsnIlePheMetMetHisIleSerGlyM 130237 : ACTATGCAAATTAGCAGCGATAttttgaataacatatttatGATGCACATCAGTGGAA : 130178 211 : euPheSerIle : 213 !!|||..!:!! etPheGluVal 130177 : TGTTCGAGGTA : 130167 vulgar: CbirOr352PSE 132 213 . KQ414817.1 130406 130166 - 109 M 27 81 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130167 130406 109 - . gene_id 1 ; sequence CbirOr352PSE ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130167 130406 . - . KQ414817.1 exonerate:protein2genome:local exon 130167 130406 . - . insertions 0 ; deletions 1 KQ414817.1 exonerate:protein2genome:local similarity 130167 130406 109 - . alignment_id 1 ; Query CbirOr352PSE ; Align 130407 133 81 ; Align 130326 161 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr356 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 123 -> 214 Target range: 130436 -> 130166 124 : AlaIlePheThrLeuLeuAlaIlePheIleAlaPheGlyLeuIleLeuTyrProPheS : 143 :!!|||.!! !!:!!!!!:!!.!!!!.:!! !.!!|||!!!:!!!!!! ! !.!! SerIleIleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleL 130436 : TCCATTATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTC : 130379 144 : erProArgIleLeuAspIleLeuTrpProValAsnGluSerArgGlnArgProSerLe : 162 !|||!:!||||||! !|||:!!! |||:!!!.!|||! !!.! !.! !.!|| euProGlnIleLeuGlyIleIleSerProLeuThrGluIleAsnThrAsn---LysLe 130378 : TCCCGCAAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAAC---AAATT : 130325 163 : uLeuPheMetThrGluTyrPheValAspGlnGluArgTyrPheTyrLeuIlePheLeu : 181 |||| !! |||||||||||||||||| ! :!! !|||.!!||||||||| :!! uLeuValArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIle 130324 : ACTCGTTCGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATC : 130268 182 : HisAlaAsnValAlaIleCysIleGlyGlyPheValMetLeuAlaThrGlyThrIleL : 201 ||||||!.!:!!|||||| !.!!! ! !:!!...:!!::!!:!! !! ::: HisAlaThrIleAlaIleMetCysSerValThrMetGlnIleSerSerAspIleLeuA 130267 : CACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttga : 130208 202 : euIleThrTyrPheGlnHisAlaCysGlyMetPheArgIle : 214 :::.....!||| ! !!|||||||||..!:!! snAsnIlePheMetMetHisIleSerGlyMetPheGluVal 130207 : ataacatatttatGATGCACATCAGTGGAATGTTCGAGGTA : 130167 vulgar: CbirOr356 123 214 . KQ414817.1 130436 130166 - 124 M 36 108 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130167 130436 124 - . gene_id 1 ; sequence CbirOr356 ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130167 130436 . - . KQ414817.1 exonerate:protein2genome:local exon 130167 130436 . - . insertions 0 ; deletions 1 KQ414817.1 exonerate:protein2genome:local similarity 130167 130436 124 - . alignment_id 1 ; Query CbirOr356 ; Align 130437 124 108 ; Align 130329 161 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr356 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 330 -> 394 Target range: 128569 -> 128303 331 : PheThrThrValTyrAsnValGlnTrpTyrLeuAlaProLeuHisValGlnLysMetI : 350 !!.||| ! !||| !!.!:!!|||||| !||||||::: |||||||||: LeuThrPheSerTyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetL 128569 : TTAACATTTAGCTATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgC : 128512 351 : leLeuPheLeuLeuGlnArgSerThrArgThrPheThrLeuAsnValGlyGlyLeuPh : 369 !!|||||||||:!!!!.|||! !! !..! !!! !! !|||!!.:!! !..!||| ! euLeuPheLeuMetHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuVa 128511 : TACTGTTCCTCATGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGT : 128455 370 : eIleGlySerLeuGluGlyAlaAlaThr >>>> Target Intron 1 >>>> L : 379 ! !!.!.!! !||| ! !|||||| 74 bp : lAlaAlaGlyAsnGluLeuTyrAlaThr++ ++M 128454 : TGCCGCGGGTAACGAGTTGTACGCTACCgt.........................aga : 128351 380 : euLeuSerThrSerIleSerTyrPheThrValLeuTyrSerThrGln : 394 !!:!!..!|||.!!.!!|||||||||||||||||||||||| !||| etValGlnThrGlyPheSerTyrPheThrValLeuTyrSerLeuGln 128350 : TGGTGCAGACTGGTTTCTCCTACTTTACGGTTCTCTACTCGTTGCAA : 128304 vulgar: CbirOr356 330 394 . KQ414817.1 128569 128303 - 111 M 48 144 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128304 128569 111 - . gene_id 2 ; sequence CbirOr356 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128569 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128569 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128304 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128304 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128304 128569 111 - . alignment_id 2 ; Query CbirOr356 ; Align 128570 331 144 ; Align 128352 379 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr349PN Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 164 -> 236 Target range: 128590 -> 128300 165 : ThrGluHisTyrAsnAspMetPheSerTyrAlaTyrAsnValArgTrpTyrThrAlaP : 184 |||... !!:!::! ! !!.!!!!:!::!||| !!.!!:!||||||! !|||| ThrSerCysPheSerIleProLeuThrPheSerTyrCysAlaLysTrpTyrLysAlaP 128590 : ACATCTTGTTTCTCTATTCCTTTAACATTTAGCTATTGTGCAAAATGGTACAAAGCCC : 128533 185 : roIleHisIleGlnLysLeuIleLeuPheLeuLeuGlnArgArgCysLysProTyrGl : 203 ||::: ||||||::::!!|||||||||:!!!!.||| ! :!!|||! ! ! roValLysSerGlnLysMetLeuLeuPheLeuMetHisArgPheMetGluProCysAr 128532 : CAGtaaaatctcaaaaaatgCTACTGTTCCTCATGCACAGATTCATGGAACCGTGCAG : 128476 204 : yLeuLysLeuGlyGlyIlePheThrAlaSerLeuGluSerPheAlaSer >>>> Ta : 220 !||||||||| !..!:!! !!.!!|||.!! !|||! !!:!|||!!! gLeuLysLeuLysSerLeuValAlaAlaGlyAsnGluLeuTyrAlaThr++ 128475 : GCTAAAACTGAAATCCTTAGTTGCCGCGGGTAACGAGTTGTACGCTACCgt....... : 128423 221 : rget Intron 1 >>>> LeuLeuThrAlaSerValSerTyrPheThrValIleTy : 232 74 bp :!!:!! !.!!.!! !!|||||||||||||||:!!|| ++MetValGlnThrGlyPheSerTyrPheThrValLeuTy 128422 : ..................agaTGGTGCAGACTGGTTTCTCCTACTTTACGGTTCTCTA : 128315 233 : rSerThrGlnLys : 236 |||| !|||:!! rSerLeuGlnGlu 128314 : CTCGTTGCAAGAA : 128301 vulgar: CbirOr349PN 164 236 . KQ414817.1 128590 128300 - 130 M 55 165 5 0 2 I 0 70 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128301 128590 130 - . gene_id 1 ; sequence CbirOr349PN ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128590 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128590 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128301 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128301 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128301 128590 130 - . alignment_id 1 ; Query CbirOr349PN ; Align 128591 165 165 ; Align 128352 220 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr342CTE Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 141 -> 214 Target range: 130382 -> 130166 142 : PheLeuProCysIleLeuHisValIleLeuProAlaAsnLysSerGlyProHisProS : 161 .!!|||||| |||||| !:!!|||! !||| !!.!:!!! !..! !!:!! ! IleLeuProGlnIleLeuGlyIleIleSerProLeuThrGluIleAsnThrAsn---L 130382 : ATTCTCCCGCAAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAAC---A : 130328 162 : erLeuHisIleMetThrGluTyrPheIleAspGlnGluLysTyrPheTyrLeuLeuVa : 180 .!|||! !:!! ||||||||||||:!!||| ! :!! ! |||.!!||||||:!!.. ysLeuLeuValArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleTh 130327 : AATTACTCGTTCGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCAC : 130271 181 : lMetHisLysGluValAlaSerCysIleGlyThrThrAlaIleIleAlaThrGlyThr : 199 !!!:||| ! :!!|||! ! !.!!..!||| ! !|||::!!:!! !! rIleHisAlaThrIleAlaIleMetCysSerValThrMetGlnIleSerSerAspIle 130270 : GATCCACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAtt : 130214 200 : MetAsnMetIlePheLeuGlnHisAlaCysGlyMetPheMetIle : 214 :::||| ||||||::!..!||| ! !!||||||||| !:!! LeuAsnAsnIlePheMetMetHisIleSerGlyMetPheGluVal 130213 : ttgaataacatatttatGATGCACATCAGTGGAATGTTCGAGGTA : 130167 vulgar: CbirOr342CTE 141 214 . KQ414817.1 130382 130166 - 117 M 18 54 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130167 130382 117 - . gene_id 1 ; sequence CbirOr342CTE ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130167 130382 . - . KQ414817.1 exonerate:protein2genome:local exon 130167 130382 . - . insertions 0 ; deletions 1 KQ414817.1 exonerate:protein2genome:local similarity 130167 130382 117 - . alignment_id 1 ; Query CbirOr342CTE ; Align 130383 142 54 ; Align 130329 161 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr345 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 132 -> 213 Target range: 1224273 -> 1224030 133 : ValIleIleIleThrValLeuProPheLeuProTrpIleLeuGlyThrPheLeuLe : 151 :!!:!!:!! !! ! !!!!|||!!.:!! ! !:!!|||! !..! !! !! LeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAspValValAlaPr 1224273 : CTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCC : 1224219 152 : uAlaAsnGluSerArgProPheHisAsnMetLeuIleValThrGluTyrPheValA : 170 ! !||||||!!!|||||| !... !:!!||| !|||!:! ! |||:!!| oLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleA 1224218 : GTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAG : 1224162 171 : spLysGluLysHisPheTyrLeuIleIleLeuHisThrTyrAlaSerIleTyrIle : 188 ||:!! ! :!!||||||||| !:!:! !!!!||| !|||.!!|||:!: ! ! spGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSer 1224161 : ACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCC : 1224108 189 : GlyValThrAlaMetValGlyGlyGlyMetMetLeuAlaSerTyrLeuLysHisIl : 207 !!! !! ! !!!::!!!.!! !! !|||:!:! ! !!!! !:!! |||:! CysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLe 1224107 : TGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCT : 1224051 208 : eCysGlyLeuPheSerIle : 213 !||||||||||||:!!:!: uCysGlyLeuPheAlaVal 1224050 : TTGCGGATTGTTCGCAGTG : 1224031 vulgar: CbirOr345 132 213 . KQ414851.1 1224273 1224030 - 115 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224273 115 - . gene_id 1 ; sequence CbirOr345 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224273 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224273 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224273 115 - . alignment_id 1 ; Query CbirOr345 ; Align 1224274 133 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr340 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 133 -> 212 Target range: 1243842 -> 1243605 134 : LeuIleLeuSerLeuLeuProLeuLeuProCysIleLeuGlyThrPheLeuPheAl : 152 :!!|||!!! !|||!!!||||||:!!||| ||||||! !..! !!! ! IleIlePheValLeuPheProLeuIleProProIleLeuAspValValSerProLe 1243842 : ATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCT : 1243788 153 : aAsnGluSerHisProLeuTyrAsnIleIleGluThrGluTyrPheValAspGluG : 171 !||||||!!!!.. !!! ! ...:::|||::: :::|||.!. !!||| | uAsnGluThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspMetG 1243787 : TAATGAGACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACAtgg : 1243731 172 : luLysThrPheTyrLeuThrLeuLeuHisThrTyrAlaSerLeuTyrIleGlyVal : 189 |||||...|||||| :!!:!!||| ! !!!!! !!:!!!: !:!! luLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMet 1243730 : agaagaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATG : 1243677 190 : ThrAlaThrValGlyGlyGlyLeuValValLeuThrTyrIleIleHisIleCysGl : 208 ! !!.!! !:!! ! !! ! !:!! !:!!..! !||| !|||! ||||| MetValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGl 1243676 : ATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGG : 1243620 209 : yLeuPheSerIle : 212 |||||||:!!:!! yLeuPheAlaVal 1243619 : CTTATTCGCTGTT : 1243606 vulgar: CbirOr340 133 212 . KQ414851.1 1243842 1243605 - 102 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243842 102 - . gene_id 1 ; sequence CbirOr340 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243842 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243842 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243842 102 - . alignment_id 1 ; Query CbirOr340 ; Align 1243843 134 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr352PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 132 -> 213 Target range: 1224273 -> 1224030 133 : IleValPheTyrSerPheLeuProLeuTrpProGlnIleLeuSerThrValLeuPr : 151 :!::!! ! |||! ! !!!!|||||| !! !:!!|||..!..!||| !|| LeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAspValValAlaPr 1224273 : CTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCC : 1224219 152 : oIleAsnValSerGlnThrGlnArgIleMetLeuIleMetThrGluTyrPheValA : 170 |:!!|||! !!!!!:! !!!::|||:!!:!!||| !:!:!:! ! |||:!!| oLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleA 1224218 : GTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAG : 1224162 171 : spGlnGluArgTyrPheTyrLeuLeuLeuLeuHisIleAsnThrAlaThrTyrIle : 188 ||:!! ! ..!:!!|||||| !:!! !!!!|||:!! !!|||::!..! ! ! spGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSer 1224161 : ACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCC : 1224108 189 : GlyLeuIleValAlaIleAlaThrGlyThrValLeuLeuGlyCysIleIleHisAl : 207 !! !!!::!! !||||||..!! !! !:!!! !:!! ! !|||.!!||| CysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLe 1224107 : TGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCT : 1224051 208 : aCysGlyLeuPheSerIle : 213 !||||||||||||:!!:!: uCysGlyLeuPheAlaVal 1224050 : TTGCGGATTGTTCGCAGTG : 1224031 vulgar: CbirOr352PSE 132 213 . KQ414851.1 1224273 1224030 - 121 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224273 121 - . gene_id 1 ; sequence CbirOr352PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224273 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224273 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224273 121 - . alignment_id 1 ; Query CbirOr352PSE ; Align 1224274 133 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr352PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 133 -> 213 Target range: 1243842 -> 1243605 134 : ValPheTyrSerPheLeuProLeuTrpProGlnIleLeuSerThrValLeuProIl : 152 :!!.!.!:! !!!.!!!|||||| |||! !||||||..!..!|||! !|||:! IleIlePheValLeuPheProLeuIleProProIleLeuAspValValSerProLe 1243842 : ATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCT : 1243788 153 : eAsnValSerGlnThrGlnArgIleMetLeuIleMetThrGluTyrPheValAspG : 171 !|||! !!!!!:!:!! |||||| :::||| :::|||.!. !!|||. uAsnGluThrArgSer---ArgIleGluValIleLysLeuGlnTyrLeuPheAspM 1243787 : TAATGAGACTCGATCT---CGGATAGaagtaataaaattgcaataccTGTTCGACA : 1243734 172 : lnGluArgTyrPheTyrLeuLeuLeuLeuHisIleAsnThrAlaThrTyrIleGly : 189 ..|||::: |||||| ||| :!!:!!! !..! !..!:!!!:!!!: ! etGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThr 1243733 : tggagaagaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACC : 1243680 190 : LeuIleValAlaIleAlaThrGlyThrValLeuLeuGlyCysIleIleHisAlaCy : 208 :!!!!:||| !|||.!!! !! !.!!:!!! !:!!! ! !||| !|||.!!|| MetMetValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCy 1243679 : ATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTG : 1243623 209 : sGlyLeuPheSerIle : 213 ||||||||||:!!:!! sGlyLeuPheAlaVal 1243622 : TGGCTTATTCGCTGTT : 1243606 vulgar: CbirOr352PSE 133 213 . KQ414851.1 1243842 1243605 - 115 M 24 72 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243842 115 - . gene_id 2 ; sequence CbirOr352PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243842 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243842 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243842 115 - . alignment_id 2 ; Query CbirOr352PSE ; Align 1243843 134 72 ; Align 1243771 159 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr338 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 138 -> 213 Target range: 32518 -> 32743 139 : IleGlyGlnValLeuProAsnIlePheHisSerValLeuSerAsnAsnGluSerArgPro : 158 |||! !||| !!|||||| !!|||.!! !! !:!! ! !! ||||||||||||! ! IleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHis 32519 : ATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACAC : 32576 159 : HisAsnLeuGlnIleThrMetGluTyrPheIleAspGlnGlnLysTyrPheTyrPheIle : 178 ||| |||! ! !.!! |||||||||:!!|||||||||||||||||| ||| HisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIle 32577 : CATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATC : 32636 179 : LeuPheHisLeuAsnThrAlaIleCysIleGlyIleIleThrThrAlaAlaValGlySer : 198 !!!.|||:!! ! !.!!:!! !:!!|||:!:! ..!.!!.!!|||||| ||| AlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSer 32637 : GCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattca : 32696 199 : ThrPheIleAlaTyrPheGlnTyrAlaCysGlyMetPheMetIle : 213 |||||| :::... :!!!.!|||!.!! |||! ||| IlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32697 : attttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr338 138 213 . KQ415081.1 32518 32743 + 140 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32519 32743 140 + . gene_id 1 ; sequence CbirOr338 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32519 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32519 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32519 32743 140 + . alignment_id 1 ; Query CbirOr338 ; Align 32519 139 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr338 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 128 -> 213 Target range: 22041 -> 22296 129 : PhePheLeuSerThrValProIleThrIleIleGlyGlnValLeuProAsnIlePheHis : 148 |||!:!! !!!! !:!! !:!! !:!!! !!.! !:!!||||||! !:!!.!. ! PheTyrSerCysGlyIleGlyLeuPheValThrAlaThrLeuLeuProIleValMetCys 22042 : TTCTATTCGTGTGGCATAGGACTTTTCGTTACAGCGACGCTTCTACCAATCGTAATGTGT : 22099 149 : SerValLeuSerAsnAsnGluSerArgProHisAsnLeuGlnIleThrMetGluTyrPhe : 168 !!!:!!! ! !!..!|||||||||!.! !|||!.!:!!! !.!! ||||||||| ArgIleGlnProArgAsnGluSerHisValHisThrIleProPheGlnGlyGluTyrPhe 22100 : AGAATACAGCCACGTAACGAATCTCACGTACACACTATTCCGTTTCAaggggaatatttt : 22159 169 : IleAspGlnGlnLysTyrPheTyrPheIleLeuPheHisLeuAsnThrAlaIleCysIle : 188 ...||||||:!!||| !!.!. ||||||:!!.!.|||:!!! !.!!:!! ||| PheAspGlnGluLysAsnMetValPheIleIleLeuHisMetIleLeuThrValThrIle 22160 : ttcgaccAAGAGAAAAATATGGTGTTCATTATACTGCACATGATACTCACAGTTACAATC : 22219 189 : GlyIleIleThrThrAlaAlaValGlySerThrPheIleAlaTyrPheGlnTyrAlaCys : 208 ! ! !! !.!!!.! !..!! !! !! !!!.:!!!.!! !..!:!!|||||| ThrHisCysIleAlaValMetThrAspMetIleLeuLeuValLeuThrMetHisAlaCys 22220 : ACACATTGCATTGCTGTAATGACTGATATGATTTTGCTAGTTTTAACCATGCATGCCTGT : 22279 209 : GlyMetPheMetIle : 213 !.!:!!||| :!! AlaLeuPheAlaVal 22280 : GCCTTGTTCGCTGTT : 22296 vulgar: CbirOr338 128 213 . KQ415081.1 22041 22296 + 102 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 22042 22296 102 + . gene_id 2 ; sequence CbirOr338 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 22042 22296 . + . KQ415081.1 exonerate:protein2genome:local exon 22042 22296 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 22042 22296 102 + . alignment_id 2 ; Query CbirOr338 ; Align 22042 129 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr340 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 122 -> 212 Target range: 32473 -> 32743 123 : ValIleIleThrSerPheThrAlaCysSerValLeuIleLeuSerLeuLeuProLeuLeu : 142 :::|||! !|||.!!|||..! ! !.!!:!!!!! !! !:!!:!!:!!! !!!!||| LeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeu 32474 : ctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTG : 32531 143 : ProCysIleLeuGlyThrPheLeuPheAlaAsnGluSerHisProLeuTyrAsnIleIle : 162 |||! !|||:!!! !..!.!. ! ! !|||||||||!..! !! ! ! ProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyr 32532 : CCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTAC : 32591 163 : GluThrGluTyrPheValAspGluGluLysThrPheTyrLeuThrLeuLeuHisThrTyr : 182 ! !|||||||||||||||::::::||| ||| !! ! !||||||! ! ! AlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeu 32592 : GCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTC : 32651 183 : AlaSerLeuTyrIleGlyValThrAlaThrValGlyGlyGlyLeuValValLeuThrTyr : 202 !.!!!!:!! !:!!|||:!!|||!.!.!!..!!.!! ::: ::: ::: GlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePhe 32652 : GGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttc : 32711 203 : IleIleHisIleCysGlyLeuPheSerIle : 212 :::.!!|||:!!|||!.! !|||!:!||| MetPheHisValCysAlaLysPheAsnIle 32712 : atGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr340 122 212 . KQ415081.1 32473 32743 + 110 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32474 32743 110 + . gene_id 1 ; sequence CbirOr340 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32474 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32474 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32474 32743 110 + . alignment_id 1 ; Query CbirOr340 ; Align 32474 123 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr342CTE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 115 -> 214 Target range: 32449 -> 32743 116 : TrpThrIleIleLysArgAsnValGluMetLeuThrLeuMetLeuPheCysGlyIlePhe : 135 !::|||! :::::: :!: !||| !.!.:!!!:! !||||||||| TyrThrThrLeuArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePhe 32450 : TATACTACtctccgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTT : 32507 136 : IleCysGlyCysAsnThrPheLeuProCysIleLeuHisValIleLeuProAlaAsnLys : 155 !! !!.! !|||||||||! !|||:!! !!|||||| !||| !|||:!! SerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGlu 32508 : TCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAA : 32567 156 : SerGlyProHisProSerLeuHisIleMetThrGluTyrPheIleAspGlnGluLysTyr : 175 ||| ! !|||! ! !|||! ! !|||||||||:!!||||||:::|||||| Ser---ArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyr 32568 : TCC---CGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatat : 32624 176 : PheTyrLeuLeuValMetHisLysGluValAlaSerCysIleGlyThrThrAlaIleIle : 195 ||| !:!!!.!:!!|||! ! ! !.!! ! !:!!||| !|||!.! !! PheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThr 32625 : ttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACG : 32684 196 : AlaThrGlyThrMetAsnMetIlePheLeuGlnHisAlaCysGlyMetPheMetIle : 214 |||... :::::: :::...|||::! |||!.!|||!.!! |||! ||| AlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32685 : GCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr342CTE 115 214 . KQ415081.1 32449 32743 + 129 M 41 123 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32450 32743 129 + . gene_id 1 ; sequence CbirOr342CTE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32450 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32450 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32450 32743 129 + . alignment_id 1 ; Query CbirOr342CTE ; Align 32450 116 123 ; Align 32573 158 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr342CTE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 160 -> 212 Target range: 11340 -> 11496 161 : SerLeuHisIleMetThrGluTyrPheIleAspGlnGluLysTyrPheTyrLeuLeuVal : 180 .!!||| :!!:!:||||||||||||:!!||| ! |||:!!|||.!!|||! !:!!..! GlyLeuIleValLeuThrGluTyrPheValAspTyrGluGlnTyrIleTyrProIleThr 11341 : GGCTTGATAGTTTTAACCGAATACTTCGTTGATTACGAGCAATACATTTATCCAATTACG : 11398 181 : MetHisLysGluValAlaSerCysIleGlyThrThrAlaIleIleAlaThrGlyThrMet : 200 ! ||| !! |||!.!! !! !!!:||| !.!! ! !|||!.!!:!! ! !:!! ThrHisValValValGlyIlePheMetGlyPheAlaIleGlnIleGlySerAspLeuLeu 11399 : ACCCACGTGGTTGTAGGAATTTTTATGGGTTTTGCTATTCAAATTGGCAGCGATCTTTTG : 11458 201 : AsnMetIlePheLeuGlnHisAlaCysGlyMetPhe : 212 ||||||||||||:!!..!|||!.! !!||||||||| AsnMetIlePheMetMetHisValSerGlyMetPhe 11459 : AATATGATATTTATGATGCACGTCAGTGGAATGTTC : 11496 vulgar: CbirOr342CTE 160 212 . KQ415081.1 11340 11496 + 112 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 11341 11496 112 + . gene_id 2 ; sequence CbirOr342CTE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 11341 11496 . + . KQ415081.1 exonerate:protein2genome:local exon 11341 11496 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 11341 11496 112 + . alignment_id 2 ; Query CbirOr342CTE ; Align 11341 161 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr342CTE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 131 -> 214 Target range: 22050 -> 22296 132 : CysGlyIlePheIleCysGlyCysAsnThrPheLeuProCysIleLeuHisValIleLeu : 151 ||||||||| :!!! !! ! |||.!!|||||| !:!!:!! ! !|||! ! CysGlyIleGlyLeuPheValThrAlaThrLeuLeuProIleValMetCysArgIleGln 22051 : TGTGGCATAGGACTTTTCGTTACAGCGACGCTTCTACCAATCGTAATGTGTAGAATACAG : 22108 152 : ProAlaAsnLysSerGlyProHisProSerLeuHisIleMetThrGluTyrPheIleAsp : 171 ||| !|||:!!||| ! !||| !!!:!!! .!!... |||||||||...||| ProArgAsnGluSerHisValHis---ThrIleProPheGlnGlyGluTyrPhePheAsp 22109 : CCACGTAACGAATCTCACGTACAC---ACTATTCCGTTTCAaggggaatattttttcgac : 22165 172 : GlnGluLysTyrPheTyrLeuLeuValMetHisLysGluValAlaSerCysIleGlyThr : 191 ||||||||| !!.!. !!!:!!:!!:!!|||! ! !:!!.!! ! ||| ! ! GlnGluLysAsnMetValPheIleIleLeuHisMetIleLeuThrValThrIleThrHis 22166 : cAAGAGAAAAATATGGTGTTCATTATACTGCACATGATACTCACAGTTACAATCACACAT : 22225 192 : ThrAlaIleIleAlaThrGlyThrMetAsnMetIlePheLeuGlnHisAlaCysGlyMet : 211 ! ! !:!! !|||! !! !!!: :!::!!!!. !..!|||||||||!.!:!! CysIleAlaValMetThrAspMetIleLeuLeuValLeuThrMetHisAlaCysAlaLeu 22226 : TGCATTGCTGTAATGACTGATATGATTTTGCTAGTTTTAACCATGCATGCCTGTGCCTTG : 22285 212 : PheMetIle : 214 ||| :!! PheAlaVal 22286 : TTCGCTGTT : 22296 vulgar: CbirOr342CTE 131 214 . KQ415081.1 22050 22296 + 108 M 28 84 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 22051 22296 108 + . gene_id 3 ; sequence CbirOr342CTE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 22051 22296 . + . KQ415081.1 exonerate:protein2genome:local exon 22051 22296 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 22051 22296 108 + . alignment_id 3 ; Query CbirOr342CTE ; Align 22051 132 84 ; Align 22135 161 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr335 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 129 -> 213 Target range: 32500 -> 32743 130 : GlyAlaPheIlePheIleAlaSerGlnIleAlaIleAlaPhePheAspIleSerSerPro : 149 ||| !||| !!:! ! ! !|||.!! ! !.!!.!!|||:!:! !:!!||| GlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaPro 32501 : GGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCT : 32558 150 : ThrAsnGlySerTyrLysHisArgIleLeuTyrIleHisIleAlaThrGluTyrPheIle : 169 !|||! !||| ! ||| !:!:! !||| ||| !|||||||||:!! LeuAsnGluSerArgHisHisValLeuProTyr---------AlaGlyGluTyrPheVal 32559 : CTAAACGAATCCCGACACCATGTACTGCCGTAC---------GCCGGCGAATATTTCGTC : 32609 170 : AspGluGlnLysTyrPheTyrLeuIleValPheHisMetTyrThrAlaLeuPheIleGly : 189 |||:::|||||||||||| !|||!.!!!.|||||| ! !.!!:!! !:!!||| AspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGly 32610 : GACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGT : 32669 190 : ThrPheSerAlaIleAlaIleGluThrLeuMetIleAlaTyrLeuGlnHisThrSerGly : 209 ! !|||! |||::::::::::::...||| :::::! |||..!!!!!.! LeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAla 32670 : CTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCC : 32729 210 : MetPheArgIle : 213 ! |||!.!||| LysPheAsnIle 32730 : AAATTCAATATT : 32743 vulgar: CbirOr335 129 213 . KQ415081.1 32500 32743 + 104 M 31 93 G 3 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32501 32743 104 + . gene_id 1 ; sequence CbirOr335 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32501 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32501 32743 . + . insertions 0 ; deletions 3 KQ415081.1 exonerate:protein2genome:local similarity 32501 32743 104 + . alignment_id 1 ; Query CbirOr335 ; Align 32501 130 93 ; Align 32594 164 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr335 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 162 -> 211 Target range: 11349 -> 11496 163 : IleAlaThrGluTyrPheIleAspGluGlnLysTyrPheTyrLeuIleValPheHisMet : 182 :!! !||||||||||||:!!||| ! :!!:!!|||.!!|||! !|||..! !|||:!! ValLeuThrGluTyrPheValAspTyrGluGlnTyrIleTyrProIleThrThrHisVal 11350 : GTTTTAACCGAATACTTCGTTGATTACGAGCAATACATTTATCCAATTACGACCCACGTG : 11407 183 : TyrThrAlaLeuPheIleGlyThrPheSerAlaIleAlaIleGluThrLeuMetIleAla : 202 !..!!.!:!!|||!!:||| ! !! ! !|||!.!! !!!: !|||! !!: ! ValValGlyIlePheMetGlyPheAlaIleGlnIleGlySerAspLeuLeuAsnMetIle 11408 : GTTGTAGGAATTTTTATGGGTTTTGCTATTCAAATTGGCAGCGATCTTTTGAATATGATA : 11467 203 : TyrLeuGlnHisThrSerGlyMetPhe : 211 !:!:!!..!|||..!|||||||||||| PheMetMetHisValSerGlyMetPhe 11468 : TTTATGATGCACGTCAGTGGAATGTTC : 11496 vulgar: CbirOr335 162 211 . KQ415081.1 11349 11496 + 103 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 11350 11496 103 + . gene_id 2 ; sequence CbirOr335 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 11350 11496 . + . KQ415081.1 exonerate:protein2genome:local exon 11350 11496 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 11350 11496 103 + . alignment_id 2 ; Query CbirOr335 ; Align 11350 163 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr356 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 134 -> 214 Target range: 32506 -> 32743 135 : PheGlyLeuIleLeuTyrProPheSerProArgIleLeuAspIleLeuTrpProValAsn : 154 |||..!! ! !:!! ! !||| !||| !|||:!!|||:!::!! !|||:!!||| PheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsn 32507 : TTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAAC : 32564 155 : GluSerArgGlnArgProSerLeuLeuPheMetThrGluTyrPheValAspGlnGluArg : 174 |||||||||!!.!.! !|||! !!:! !||||||||||||||||||:::::: GluSerArgHisHis---ValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLys 32565 : GAATCCCGACACCAT---GTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaa : 32621 175 : TyrPheTyrLeuIlePheLeuHisAlaAsnValAlaIleCysIleGlyGlyPheValMet : 194 |||||| !||| |||||| ! !! !.!!:!! !:!!||| ! ||| TyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAla 32622 : tatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCC : 32681 195 : LeuAlaThrGlyThrIleLeuIleThrTyrPheGlnHisAlaCysGlyMetPheArgIle : 214 !|||... :::|||...||| :::... |||!.!|||!.!! |||!.!||| ThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32682 : ACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32741 vulgar: CbirOr356 134 214 . KQ415081.1 32506 32743 + 131 M 25 75 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32507 32743 131 + . gene_id 1 ; sequence CbirOr356 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32507 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32507 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32507 32743 131 + . alignment_id 1 ; Query CbirOr356 ; Align 32507 135 75 ; Align 32582 161 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr356 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 160 -> 212 Target range: 11340 -> 11496 161 : SerLeuLeuPheMetThrGluTyrPheValAspGlnGluArgTyrPheTyrLeuIlePhe : 180 .!!|||:!! !!:!:|||||||||||||||||| ! |||!:!|||.!!|||! !||| GlyLeuIleValLeuThrGluTyrPheValAspTyrGluGlnTyrIleTyrProIleThr 11341 : GGCTTGATAGTTTTAACCGAATACTTCGTTGATTACGAGCAATACATTTATCCAATTACG : 11398 181 : LeuHisAlaAsnValAlaIleCysIleGlyGlyPheValMetLeuAlaThrGlyThrIle : 200 !|||!.! !|||!.!|||! !!!:||| ! !:!!...:!!!.!!:!! ! !:!: ThrHisValValValGlyIlePheMetGlyPheAlaIleGlnIleGlySerAspLeuLeu 11399 : ACCCACGTGGTTGTAGGAATTTTTATGGGTTTTGCTATTCAAATTGGCAGCGATCTTTTG : 11458 201 : LeuIleThrTyrPheGlnHisAlaCysGlyMetPhe : 212 !!!:! !!:!.!...!|||!.! !!||||||||| AsnMetIlePheMetMetHisValSerGlyMetPhe 11459 : AATATGATATTTATGATGCACGTCAGTGGAATGTTC : 11496 vulgar: CbirOr356 160 212 . KQ415081.1 11340 11496 + 100 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 11341 11496 100 + . gene_id 2 ; sequence CbirOr356 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 11341 11496 . + . KQ415081.1 exonerate:protein2genome:local exon 11341 11496 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 11341 11496 100 + . alignment_id 2 ; Query CbirOr356 ; Align 11341 161 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr358 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 128 -> 213 Target range: 32488 -> 32743 129 : PheValGlyIleThrLysLeuAlaPheTrpAlaValGlnIleValIleProTyrLeuAsp : 148 |||||| !||| !! !!!!:!!!:! !||||||.!!:!! ! !:!!||| PheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAsp 32489 : TTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGAC : 32546 149 : AsnValAlaProIleAsnGlyCysArgProArgArgLeuTyrIleAspValGluTyrPhe : 168 :!!||||||:!!|||! !! !|||! !!.! !||| !! !! !||||||||| ValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPhe 32547 : GTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTC : 32606 169 : IleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnAlaAlaLeuPheIle : 188 :!!||||||:::||||||::: !||| !:!:|||||| !!.!.!!:!! !:!! ValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeu 32607 : GTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTT : 32666 189 : GlyIleLeuThrLeuLeuAlaThrGlyThrLeuMetValMetPhePheGlnHisAlaCys : 208 |||:!: !..! ! !|||... ::::::...:::...|||... |||!.!||| GlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCys 32667 : GGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGC : 32726 209 : GlyMetPheLysIle : 213 !.!! |||!!.||| AlaLysPheAsnIle 32727 : GCCAAATTCAATATT : 32743 vulgar: CbirOr358 128 213 . KQ415081.1 32488 32743 + 133 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32489 32743 133 + . gene_id 1 ; sequence CbirOr358 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32489 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32489 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32489 32743 133 + . alignment_id 1 ; Query CbirOr358 ; Align 32489 129 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr359 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 137 -> 211 Target range: 32521 -> 32743 138 : IleGlnIleAlaIleProTyrLeuAspAspValThrProIleAsnGlyCysArgLeuHis : 157 :!:|||.!! ! ! !:!!|||! :!!.!!|||:!!|||! !! !|||! !||| ValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHis 32522 : GTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCAT : 32579 158 : ArgLeuTyrIleAlaValGluTyrPheIleAspGlnGluLysTyrTyrTyrValIleLeu : 177 !||| !|||! !|||||||||:!!||||||:::||||||::: !||| ! ValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAla 32580 : GTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCG : 32639 178 : IleHisMetAsnValAlaLeuPheIleGlyThrLeuThrValIleAlaThrGlyThrLeu : 197 :!:|||||| !! !.!!:!! !:!!||| ! !..!!.!! |||... :::::: LeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIle 32640 : TTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaatt : 32699 198 : MetLeuMetPhePheGlnHisAlaCysGlyMetPheLysIle : 211 ...:::...|||... |||!.!|||!.!! |||!!.||| PheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32700 : ttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr359 137 211 . KQ415081.1 32521 32743 + 127 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32522 32743 127 + . gene_id 1 ; sequence CbirOr359 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32522 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32522 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32522 32743 127 + . alignment_id 1 ; Query CbirOr359 ; Align 32522 138 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr359 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 147 -> 211 Target range: 22104 -> 22296 148 : ValThrProIleAsnGlyCysArgLeuHisArgLeuTyrIleAlaValGluTyrPheIle : 167 :!! !||| !|||! !! !!.!:!!|||! !:!! .!! |||||||||... IleGlnProArgAsnGluSerHisValHisThrIleProPheGlnGlyGluTyrPhePhe 22105 : ATACAGCCACGTAACGAATCTCACGTACACACTATTCCGTTTCAaggggaatattttttc : 22162 168 : AspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnValAlaLeuPheIleGly : 187 |||||||||||| !! !!|||:!!:!:||||||! :!!.!!:!! ||| ! AspGlnGluLysAsnMetValPheIleIleLeuHisMetIleLeuThrValThrIleThr 22163 : gaccAAGAGAAAAATATGGTGTTCATTATACTGCACATGATACTCACAGTTACAATCACA : 22222 188 : ThrLeuThrValIleAlaThrGlyThrLeuMetLeuMetPhePheGlnHisAlaCysGly : 207 !! !! !!.!:!! !|||! !! !:!!:!!|||:!:!!. !..!|||||||||!.! HisCysIleAlaValMetThrAspMetIleLeuLeuValLeuThrMetHisAlaCysAla 22223 : CATTGCATTGCTGTAATGACTGATATGATTTTGCTAGTTTTAACCATGCATGCCTGTGCC : 22282 208 : MetPheLysIle : 211 :!!||| :!! LeuPheAlaVal 22283 : TTGTTCGCTGTT : 22296 vulgar: CbirOr359 147 211 . KQ415081.1 22104 22296 + 105 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 22105 22296 105 + . gene_id 2 ; sequence CbirOr359 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 22105 22296 . + . KQ415081.1 exonerate:protein2genome:local exon 22105 22296 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 22105 22296 105 + . alignment_id 2 ; Query CbirOr359 ; Align 22105 148 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr346PI Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 78 -> 174 Target range: 32458 -> 32743 79 : IleSerPheTrpIleAsnAlaTyrThrValPheAlaValCysCysValPheMetLeuSer : 98 ::: |||:::... ! !|||! !|||!.! ! ! ! :!!||| ! !:!! LeuArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAla 32459 : ctccgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCA : 32516 99 : LeuLeuProIleLeuProTrpIleLeuGlyThrPheLeuPheAlaAsnGluSerGlnPro : 118 :!!:!!! !.!!||||||!::|||:!!! !..!.!. ! ! !|||||||||!:!! ! IleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHis 32517 : ATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACAC : 32576 119 : LeuTyrAspIleGlnIleValThrGluTyrPheValAspLysGluLysThrPheTyrLeu : 138 :!!! :!:! ! !!.! !|||||||||||||||::::::||| ||| ! ---HisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuPro 32577 : ---CATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccA : 32633 139 : ThrLeuLeuHisThrTyrAlaSerLeuTyrIleGlyValThrAlaMetValGlyGlyGly : 158 ! ! !||||||! ! !!.!!!!:!! !:!!|||:!!|||!.! ..!!.!! IleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAsp 32634 : ATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgat : 32693 159 : MetMetLeuIleAlaTyrLeuIleHisIleCysGlyLeuPheSerIle : 174 :::...||| :::::!.!!|||:!!|||!.! !|||!:!||| SerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32694 : tcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr346PI 78 174 . KQ415081.1 32458 32743 + 109 M 40 120 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32459 32743 109 + . gene_id 1 ; sequence CbirOr346PI ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32459 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32459 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32459 32743 109 + . alignment_id 1 ; Query CbirOr346PI ; Align 32459 79 120 ; Align 32579 120 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr346PI Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 287 -> 338 Target range: 38478 -> 38631 288 : AspIlePheSerValAlaTyrSerValGlnTrpTyrThrAlaProValArgIleGlnLys : 307 ||||||!!.! !||| !!:!! ! !!:!|||||| !||||||:!!!:!||||||||| AspIleLeuPheValArgPheTyrSerArgTrpTyrAspAlaProLeuLysIleGlnLys 38479 : GATATATTGTTCGTCAGGTTTTATTCACGATGGTACGACGCGCCTCTAAAAATACAGAAA : 38536 308 : LeuIleLeuPheLeuLeuGluArgSerCysLysAsnTyrGlyValArgValGlyGlyLeu : 327 |||:!!|||.!!:!!:!!.!.||||||! !:!! |||:!!|||:!!|||! !! ! LeuValLeuIleIleMetAsnArgSerPheGluProValGlyLeuArgIleGlyAspTyr 38537 : CTAGTACTGATCATAATGAACAGAAGCTTCGAACCAGTAGGCCTCCGTATTGGCGATTAC : 38596 328 : PheIleThrSerLeuGluGlyPheAlaThrLeu : 338 ...::::::|||...|||:::::!:!! GlnAspValThrIleGluAsnPheSerSerVal 38597 : CAGGAcgtaacaattgaaaatttctcatcCGTA : 38631 vulgar: CbirOr346PI 287 338 . KQ415081.1 38478 38631 + 106 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 38479 38631 106 + . gene_id 2 ; sequence CbirOr346PI ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 38479 38631 . + . KQ415081.1 exonerate:protein2genome:local exon 38479 38631 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 38479 38631 106 + . alignment_id 2 ; Query CbirOr346PI ; Align 38479 288 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr345 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 115 -> 213 Target range: 32452 -> 32743 116 : AsnSerAlaGluTyrIleThrIleIleLeuThrLeuPheAlaValCysCysValIleIle : 135 !.!!!: ...:::... :::||| !||| !|||!.! ! ! ! :!!.!! ! ThrThrLeuArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSer 32453 : ACTACtctccgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCC : 32510 136 : IleThrValLeuProPheLeuProTrpIleLeuGlyThrPheLeuLeuAlaAsnGluSer : 155 !.!!:!!:!!! !|||||||||!::|||:!!! !..!.!. !! ! !||||||||| TyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSer 32511 : TACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCC : 32570 156 : ArgProPheHisAsnMetLeuIleValThrGluTyrPheValAspLysGluLysHisPhe : 175 ||| !||| :!!! ! !!.! !|||||||||||||||::::::|||:::||| Arg---HisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPhe 32571 : CGA---CACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttc : 32627 176 : TyrLeuIleIleLeuHisThrTyrAlaSerIleTyrIleGlyValThrAlaMetValGly : 195 !||| ||||||! ! !!.!!!!:!! !:!!|||:!!|||!.! ..!!.! LeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAla 32628 : ctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCT : 32687 196 : GlyGlyMetMetLeuAlaSerTyrLeuLysHisIleCysGlyLeuPheSerIle : 213 ! :::... :::::! |||:!!|||!.! !|||!:!||| ValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32688 : GtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr345 115 213 . KQ415081.1 32452 32743 + 124 M 41 123 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32453 32743 124 + . gene_id 1 ; sequence CbirOr345 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32453 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32453 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32453 32743 124 + . alignment_id 1 ; Query CbirOr345 ; Align 32453 116 123 ; Align 32576 158 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr345 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 135 -> 211 Target range: 11271 -> 11496 136 : IleThrValLeuProPheLeuProTrpIleLeuGlyThrPheLeuLeuAlaAsnGluSer : 155 |||..! !!|||! ! ||| !! ! ! !..!|||.!! !! ! !||||||!!! IleValPheLeuHisThrLeuSerGlnThrThrAsnThrIleThrSerArgAsnGluThr 11272 : ATCGTCTTCTTGCATACGCTTTCGCAAACTACCAATACGATCACATCTCGAAACGAGACC : 11329 156 : ArgProPheHisAsnMetLeuIleValThrGluTyrPheValAspLysGluLysHisPhe : 175 ||| !! :!!..!:!!:!!:!!:!!|||||||||||||||||| ! |||:!!:!!.!! ArgAla---AsnGlyLeuIleValLeuThrGluTyrPheValAspTyrGluGlnTyrIle 11330 : AGAGCT---AATGGCTTGATAGTTTTAACCGAATACTTCGTTGATTACGAGCAATACATT : 11386 176 : TyrLeuIleIleLeuHisThrTyrAlaSerIleTyrIleGlyValThrAlaMetValGly : 195 |||! !|||! !|||..! !!.!.!!|||!:!!!:||| !!.!! !...:!!||| TyrProIleThrThrHisValValValGlyIlePheMetGlyPheAlaIleGlnIleGly 11387 : TATCCAATTACGACCCACGTGGTTGTAGGAATTTTTATGGGTTTTGCTATTCAAATTGGC : 11446 196 : GlyGlyMetMetLeuAlaSerTyrLeuLysHisIleCysGlyLeuPhe : 211 .!!! !:!::!! ! !! !!:!:!!! !|||:!! !!|||:!!||| SerAspLeuLeuAsnMetIlePheMetMetHisValSerGlyMetPhe 11447 : AGCGATCTTTTGAATATGATATTTATGATGCACGTCAGTGGAATGTTC : 11496 vulgar: CbirOr345 135 211 . KQ415081.1 11271 11496 + 108 M 22 66 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 11272 11496 108 + . gene_id 2 ; sequence CbirOr345 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 11272 11496 . + . KQ415081.1 exonerate:protein2genome:local exon 11272 11496 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 11272 11496 108 + . alignment_id 2 ; Query CbirOr345 ; Align 11272 136 66 ; Align 11338 159 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr352PSE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 131 -> 213 Target range: 32500 -> 32743 132 : GlyIleValPheTyrSerPheLeuProLeuTrpProGlnIleLeuSerThrValLeuPro : 151 |||||| !!! !|||:!!.!.:!!! !!!! !||| ! |||:!!..!..!:!! !||| GlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaPro 32501 : GGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCT : 32558 152 : IleAsnValSerGlnThrGlnArgIleMetLeuIleMetThrGluTyrPheValAspGln : 171 :!!|||! !|||!:! !!.!.!:!!:!!! ! ! !|||||||||||||||||| LeuAsnGluSerArg---HisHisValLeuProTyrAlaGlyGluTyrPheValAspGln 32559 : CTAAACGAATCCCGA---CACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcag : 32615 172 : GluArgTyrPheTyrLeuLeuLeuLeuHisIleAsnThrAlaThrTyrIleGlyLeuIle : 191 ::::::|||||| !:!! !||||||!!: ! !.!!..! !:!!||||||! GlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThr 32616 : caaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACG : 32675 192 : ValAlaIleAlaThrGlyThrValLeuLeuGlyCysIleIleHisAlaCysGlyLeuPhe : 211 ||||||! |||... ::::::...::: :::.!!|||!.!|||!.! !||| ValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPhe 32676 : GTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTC : 32735 212 : SerIle : 213 !:!||| AsnIle 32736 : AATATT : 32743 vulgar: CbirOr352PSE 131 213 . KQ415081.1 32500 32743 + 127 M 25 75 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32501 32743 127 + . gene_id 1 ; sequence CbirOr352PSE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32501 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32501 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32501 32743 127 + . alignment_id 1 ; Query CbirOr352PSE ; Align 32501 132 75 ; Align 32576 158 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr349PN Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 169 -> 220 Target range: 38478 -> 38631 170 : AspMetPheSerTyrAlaTyrAsnValArgTrpTyrThrAlaProIleHisIleGlnLys : 189 |||!!:!!.! ! ! !!:! !! !||||||||| !||||||:!! ! ||||||||| AspIleLeuPheValArgPheTyrSerArgTrpTyrAspAlaProLeuLysIleGlnLys 38479 : GATATATTGTTCGTCAGGTTTTATTCACGATGGTACGACGCGCCTCTAAAAATACAGAAA : 38536 190 : LeuIleLeuPheLeuLeuGlnArgArgCysLysProTyrGlyLeuLysLeuGlyGlyIle : 209 |||:!!|||.!!:!!:!!.!.|||!!!! !:!!||| ||||||::::!!|||! ! ! LeuValLeuIleIleMetAsnArgSerPheGluProValGlyLeuArgIleGlyAspTyr 38537 : CTAGTACTGATCATAATGAACAGAAGCTTCGAACCAGTAGGCCTCCGTATTGGCGATTAC : 38596 210 : PheThrAlaSerLeuGluSerPheAlaSerLeu : 220 ...::::::|||:::|||:::|||:!! GlnAspValThrIleGluAsnPheSerSerVal 38597 : CAGGAcgtaacaattgaaaatttctcatcCGTA : 38631 vulgar: CbirOr349PN 169 220 . KQ415081.1 38478 38631 + 109 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 38479 38631 109 + . gene_id 1 ; sequence CbirOr349PN ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 38479 38631 . + . KQ415081.1 exonerate:protein2genome:local exon 38479 38631 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 38479 38631 109 + . alignment_id 1 ; Query CbirOr349PN ; Align 38479 170 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr343PSE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 138 -> 215 Target range: 32515 -> 32743 139 : CysLeuLeuProPhePheProArgIleLeuArgThrPheThrSerIleAsnValSerGln : 158 ...:!!:!!! !|||.!.||| !|||:!! !..!.!..!! !!:!!|||! !|||!:! AlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArg 32516 : GCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGA : 32573 159 : GluHisPheThrValHisIleMetArgGluTyrPheIleAspGlnGluLysTyrTyrTyr : 178 .!.||| ..!:!!! ! !!|||||||||:!!||||||:::||||||::: HisHis---ValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeu 32574 : CACCAT---GTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttccta : 32630 179 : CysIleLeuLeuHisPheAspValSerIlePheIleGlyThrLeuValThrThrAlaThr : 198 ||| !||||||.!. !! !!!!:!! !:!!||| ! !|||.!!||||||... ProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaVal 32631 : ccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtc : 32690 199 : GlyThrLeuLeuPheGlyCysIleLysTyrIleCysGlyIlePheArgIle : 215 ::::::...... ::: :!!:!!|||!.!! !|||!.!||| AspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32691 : gattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr343PSE 138 215 . KQ415081.1 32515 32743 + 102 M 22 66 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32516 32743 102 + . gene_id 1 ; sequence CbirOr343PSE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32516 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32516 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32516 32743 102 + . alignment_id 1 ; Query CbirOr343PSE ; Align 32516 139 66 ; Align 32582 162 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr336 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 109 -> 216 Target range: 4912 -> 5239 110 : IleAlaIleTyrAspLysTyrAlaIleIleAlaLysArgIleThrIleGlyLeuThrIleVa : 130 |||::: ! |||!:!!.! !:!!! !::: !:!::!!.!! !!!!|||.!!! IleSerLysMetLysLysPheVal***LeuGluArgSerLeuSerPheTyrPheThrPheGl 4913 : atttcaaagatGAAGAAATTCGTGTAATTAGAACGTTCTCTGTCATTCTATTTCACGTTTGA : 4973 131 : lAlaIleTyrAsnLeuAlaCysPheIleValMetLeuCysTrpProTyr<-><-><->IleL : 148 !.!!:!::!!! ! ! !||| ! !:!!.!.:!!|||! !|||!:! |||| uThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleL 4974 : AACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTC : 5036 149 : euAspIleIleMetProLysAsnGluThrTyrValGlnArgPheIleValHisMetThrLys : 168 ||||||||:!!|||||| !||||||||| !.! |||!!..!!|||:!! .!! ! euAspIleLeuMetProLeuAsnGluThrArgAla---ArgLeuPheValTyrProAlaTyr 5037 : TGGACATCCTTATGCCGTTGAACGAGACGCGAGCA---CGGTTGTTCGTCTATCCAGCTTAC : 5093 169 : AspPheAlaIleGlnGluLysTyrPheTyrLeuPheLeuLeuHisLeuTyrValAlaSerAl : 189 !!|||!.! !:!!!!:|||||| !||||||.!!:!! !|||:!!|||:!!!.! !!. TyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValVa 5094 : TATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGT : 5156 190 : aValGlyGlyValSerPheLeuAlaThrGlyThrMetMetLeuSerCysLeuLysHisIleC : 210 !:!! ! ! ! !|||! !||| !! !.!!! :!!! !..!:!!:!!||| !| lMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaC 5157 : AATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTT : 5219 211 : ysGlyIleLeuArgIleAla : 216 |||||:!:||| !|||||| ysGlyLeuLeuAlaIleAla 5220 : GCGGATTGTTGGCCATTGCA : 5239 vulgar: CbirOr336 109 216 . LHQN01025741.1 4912 5239 + 101 M 37 111 G 0 9 M 13 39 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4913 5239 101 + . gene_id 1 ; sequence CbirOr336 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4913 5239 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4913 5239 . + . insertions 9 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 4913 5239 101 + . alignment_id 1 ; Query CbirOr336 ; Align 4913 110 111 ; Align 5033 147 39 ; Align 5072 161 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr356 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 125 -> 215 Target range: 1561 -> 1828 126 : PheThrLeuLeuAlaIlePheIleAlaPheGlyLeuIleLeuTyrProPheSerProArgIl : 146 ||||||:!! !!.!:!:||| ! ! !! !!!!! !! ! !!.!!!!!||||||:! PheThrValAsnGlyLeuPheCysTyrValIlePheThrSerValAlaIleThrProArgVa 1562 : TTCACAGTAAACGGACTGTTTTGCTACGTTATATTCACCTCAGTGGCGATTACGCCTCGTGT : 1622 147 : eLeuAspIleLeuTrpProValAsnGluSerArgGlnArgProSerLeuLeuPheMetThrG : 167 !||||||:!!:!!! ||| !|||||||||||| !! !..!!!!:!!!:! .!! lLeuAspLeuIleSerProLysAsnGluSerArg---GlyValAspPheIleTyrProAlaT 1623 : TCTCGACCTTATTTCACCGAAAAACGAATCGCGT---GGGGTTGACTTCATTTATCCTGCAT : 1682 168 : luTyrPheValAspGlnGluArgTyrPheTyrLeuIlePheLeuHisAlaAsnValAlaIle : 187 ! ||| !:!!|||:!!|||..!:!!!:!|||:!!:!:.!. !||| ! ! !!.!||| yrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHisMetLeuCysValIle 1683 : ACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCACATGCTCTGCGTGATA : 1742 188 : CysIleGlyGlyPheValMetLeuAlaThrGlyThrIleLeuIleThrTyrPheGlnHisAl : 208 !:!!! ! !|||||| :!!:!! !! !||||||! !!!:!.! ! ! |||||||| ThrValValPhePheValTyrIleSerCysAspThrIleTyrMetAsnIleValGlnHisAl 1743 : ACTGTAGTGTTTTTCGTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGC : 1805 209 : aCysGlyMetPheArgIleAla : 215 |||||||:!:.!.!.!:!!:!! aCysGlyLeuLeuAsnValSer 1806 : GTGCGGATTACTGAACGTCTCT : 1828 vulgar: CbirOr356 125 215 . LHQN01025741.1 1561 1828 + 123 M 32 96 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1562 1828 123 + . gene_id 1 ; sequence CbirOr356 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1562 1828 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1562 1828 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 1562 1828 123 + . alignment_id 1 ; Query CbirOr356 ; Align 1562 126 96 ; Align 1658 159 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr356 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 140 -> 215 Target range: 5017 -> 5239 141 : ProPheSerProArgIleLeuAspIleLeuTrpProValAsnGluSerArgGlnArgProSe : 161 |||||| ! !!! !||||||||||||||| !|||:!!||||||!!!||| !||| ! ProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArg---Le 5018 : CCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGG---TT : 5075 162 : rLeuLeuPheMetThrGluTyrPheValAspGlnGluArgTyrPheTyrLeuIlePheLeuH : 182 !!!!:!!!:! .!! ! ||||||||||||:!!!!:!:!||| !||||||||| ! !| uPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyH 5076 : GTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGC : 5138 183 : isAlaAsnValAlaIleCysIleGlyGlyPheValMetLeuAlaThrGlyThrIleLeuIle : 202 || ! !!:!!!.!:!: !!: ! !! !|||.!.! !||| !! !.!!! !! !:!: isMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrVal 5139 : ATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTG : 5198 203 : ThrTyrPheGlnHisAlaCysGlyMetPheArgIleAla : 215 ! ! ! |||||||||||||||:!!!!. !|||||| TyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla 5199 : TACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCA : 5239 vulgar: CbirOr356 140 215 . LHQN01025741.1 5017 5239 + 122 M 19 57 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5018 5239 122 + . gene_id 2 ; sequence CbirOr356 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5018 5239 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5018 5239 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 5018 5239 122 + . alignment_id 2 ; Query CbirOr356 ; Align 5018 141 57 ; Align 5075 161 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr359 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 142 -> 212 Target range: 5029 -> 5239 143 : ProTyrLeuAspAspValThrProIleAsnGlyCysArgLeuHisArgLeuTyrIleAlaVa : 163 ||| !|||||| !:!!! !|||:!:|||! ! ||| !!.. !!!! ! ! !!!. ProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAl 5030 : CCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGC : 5090 164 : lGluTyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnValAlaL : 184 ! ! ||||||:!!|||:!!!!:||||||:!!|||:!!|||:!! |||||| !!:!!!.!: aTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValV 5091 : TTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAG : 5153 185 : euPheIleGlyThrLeuThrValIleAlaThrGlyThrLeuMetLeuMetPhePheGlnHis : 204 !! ! !!: !! !! !..! !! !||| !! !.!! ! :!! ! ! |||||| alValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHis 5154 : TGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACAC : 5213 205 : AlaCysGlyMetPheLysIleAla : 212 |||||||||:!!!!. |||||| AlaCysGlyLeuLeuAlaIleAla 5214 : GCTTGCGGATTGTTGGCCATTGCA : 5239 vulgar: CbirOr359 142 212 . LHQN01025741.1 5029 5239 + 111 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5030 5239 111 + . gene_id 1 ; sequence CbirOr359 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5030 5239 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5030 5239 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5030 5239 111 + . alignment_id 1 ; Query CbirOr359 ; Align 5030 143 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr359 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 164 -> 212 Target range: 11588 -> 11732 165 : TyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnValAlaLeu : 184 ||||||:!!|||:!!! !:!!||||||||| !|||:!!:!!||| !.. !.!!:!! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrVal 11589 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTT : 11646 185 : PheIleGlyThrLeuThrValIleAlaThrGlyThrLeuMetLeuMetPhePheGlnHis : 204 !!.|||! !..!:!!..! ! !||| !! !||| ! :!!:!:.!. ! |||||| LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 11647 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 11706 205 : AlaCysGlyMetPheLysIleAla : 212 .!!||||||:!!||| :!:||| ThrCysGlyLeuPheAlaValAla 11707 : ACTTGCGGACTGTTCGCCGTGGCC : 11732 vulgar: CbirOr359 164 212 . LHQN01025741.1 11588 11732 + 104 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11589 11732 104 + . gene_id 2 ; sequence CbirOr359 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11589 11732 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11589 11732 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11589 11732 104 + . alignment_id 2 ; Query CbirOr359 ; Align 11589 165 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr359 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 136 -> 212 Target range: 1600 -> 1828 137 : ThrIleGlnIleAlaIleProTyrLeuAspAspValThrProIleAsnGlyCysArgLeuHi : 157 :!!:!: !|||.!! !! ! !|||||| !:!!:!!|||! !|||! !! ||| ! SerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyVa 1601 : TCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGT : 1661 158 : sArgLeuTyrIleAlaValGluTyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuI : 178 ! !!!! ! ! !!!.! ! ||| !:!!|||:!!|||:!!:!!||||||:!!:!::!! lAspPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetG 1662 : TGACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGG : 1724 179 : leHisMetAsnValAlaLeuPheIleGlyThrLeuThrValIleAlaThrGlyThrLeuMet : 198 !|||||| ! !!.!:!! !:!!! ! !!!!..! !|||:!! !! !|||:!! lyHisMetLeuCysValIleThrValValPhePheValTyrIleSerCysAspThrIleTyr 1725 : GTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTCTACATCTCCTGTGACACGATCTAC : 1784 199 : LeuMetPhePheGlnHisAlaCysGlyMetPheLysIleAla : 212 :!!! .!! ! |||||||||||||||:!:.!.!!.:!!:!! MetAsnIleValGlnHisAlaCysGlyLeuLeuAsnValSer 1785 : ATGAATATCGTGCAACACGCGTGCGGATTACTGAACGTCTCT : 1828 vulgar: CbirOr359 136 212 . LHQN01025741.1 1600 1828 + 100 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1601 1828 100 + . gene_id 3 ; sequence CbirOr359 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1601 1828 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1601 1828 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1601 1828 100 + . alignment_id 3 ; Query CbirOr359 ; Align 1601 137 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr358 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 126 -> 232 Target range: 4975 -> 5293 127 : ValValPheValGlyIleThrLysLeuAlaPheTrpAlaValGlnIleValIleProTyrLe : 147 ..!||| !:!!..!:!! ! ! !||| !..!:!!! !.!!||| ||| !|| ThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLe 4976 : ACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCT : 5036 148 : uAspAsnValAlaProIleAsnGlyCysArgProArgArgLeuTyrIleAspValGluTyrP : 168 ||||! !:!! !|||:!:|||! ! ||| !!||| !!!! ! ! !.! ! |||| uAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrP 5037 : GGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATT : 5099 169 : heIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnAlaAlaLeuPheIle : 188 ||:!!|||:!!!!:||||||:!!|||:!!|||:!! |||||| !! !!.!:!! ! !!: heValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMet 5100 : TCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATG : 5159 189 : GlyIleLeuThrLeuLeuAlaThrGlyThrLeuMetValMetPhePheGlnHisAlaCysGl : 209 !|||! !..!!!!! !||| !! !.!! ! ||| ! ! |||||||||||||| LeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGl 5160 : CTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGG : 5222 210 : yMetPheLysIleAlaCysTyrArgIleGluHisAlaIleGluIleAsnAlaLeuLysAsnI : 230 |:!!!!. |||||| ! !! !:!!:!! !:!! ! !|||!.!!!! !!! yLeuLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGluAsnGlyPheLeuTyrA 5223 : ATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAATGGTTTTCTTTATA : 5285 231 : leAsnPhe : 232 !|||||| rgAsnPhe 5286 : GAAATTTC : 5293 vulgar: CbirOr358 126 232 . LHQN01025741.1 4975 5293 + 135 M 106 318 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4976 5293 135 + . gene_id 1 ; sequence CbirOr358 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4976 5293 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4976 5293 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4976 5293 135 + . alignment_id 1 ; Query CbirOr358 ; Align 4976 127 318 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr358 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 134 -> 214 Target range: 1588 -> 1828 135 : LeuAlaPheTrpAlaValGlnIleValIleProTyrLeuAspAsnValAlaProIleAsnGl : 155 :!! !||| :!!||| !|||..! !! ! !|||||| !:!!:!!|||! !|||! ValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGl 1589 : GTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGA : 1649 156 : yCysArgProArgArgLeuTyrIleAspValGluTyrPheIleAspGlnGluLysTyrTyrT : 176 !! ||| ! ! !!!! ! ! !!.! ! ||| !:!!|||:!!|||:!!:!!|||| uSerArgGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrT 1650 : ATCGCGTGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAGGAACATTATT : 1712 177 : yrValIleLeuIleHisMetAsnAlaAlaLeuPheIleGlyIleLeuThrLeuLeuAlaThr : 196 ||:!!:!::!! !|||||| !..!!.!:!! !:!!! !.!!!!!..!! !:!!:!! ! yrIleLeuMetGlyHisMetLeuCysValIleThrValValPhePheValTyrIleSerCys 1713 : ACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTCTACATCTCCTGT : 1772 197 : GlyThrLeuMetValMetPhePheGlnHisAlaCysGlyMetPheLysIleAla : 214 ! !|||:!! :!!! .!! ! |||||||||||||||:!:.!.!!.:!!:!! AspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnValSer 1773 : GACACGATCTACATGAATATCGTGCAACACGCGTGCGGATTACTGAACGTCTCT : 1828 vulgar: CbirOr358 134 214 . LHQN01025741.1 1588 1828 + 108 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1589 1828 108 + . gene_id 2 ; sequence CbirOr358 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1589 1828 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1589 1828 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1589 1828 108 + . alignment_id 2 ; Query CbirOr358 ; Align 1589 135 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr358 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 166 -> 214 Target range: 11588 -> 11732 167 : TyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnAlaAlaLeu : 186 ||||||:!!|||:!!! !:!!||||||||| !|||:!!:!!||| !....!.!!:!! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrVal 11589 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTT : 11646 187 : PheIleGlyIleLeuThrLeuLeuAlaThrGlyThrLeuMetValMetPhePheGlnHis : 206 !!.|||! !:!::!!..!! !! !||| !! !||| ! :!!:!:.!. ! |||||| LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 11647 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 11706 207 : AlaCysGlyMetPheLysIleAla : 214 .!!||||||:!!||| :!:||| ThrCysGlyLeuPheAlaValAla 11707 : ACTTGCGGACTGTTCGCCGTGGCC : 11732 vulgar: CbirOr358 166 214 . LHQN01025741.1 11588 11732 + 107 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11589 11732 107 + . gene_id 3 ; sequence CbirOr358 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11589 11732 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11589 11732 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11589 11732 107 + . alignment_id 3 ; Query CbirOr358 ; Align 11589 167 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr358 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 166 -> 214 Target range: 1134 -> 990 167 : TyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnAlaAlaLeuPh : 187 ||||||:!!|||:!!! !:!!||||||||| !|||:!!:!!||| !....!.!!:!!!! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLe 1134 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTT : 1074 188 : eIleGlyIleLeuThrLeuLeuAlaThrGlyThrLeuMetValMetPhePheGlnHisAlaC : 208 .|||! !:!::!!..!! !! !||| !! !||| ! :!!:!:.!. ! ||||||.!!| uIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrC 1073 : GATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTT : 1011 209 : ysGlyMetPheLysIleAla : 214 |||||:!!||| :!:||| ysGlyLeuPheAlaValAla 1010 : GCGGACTGTTCGCCGTGGCC : 991 vulgar: CbirOr358 166 214 . LHQN01027734.1 1134 990 - 107 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 991 1134 107 - . gene_id 1 ; sequence CbirOr358 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 991 1134 . - . LHQN01027734.1 exonerate:protein2genome:local exon 991 1134 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 991 1134 107 - . alignment_id 1 ; Query CbirOr358 ; Align 1135 167 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr359 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 164 -> 212 Target range: 1134 -> 990 165 : TyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnValAlaLeuPh : 185 ||||||:!!|||:!!! !:!!||||||||| !|||:!!:!!||| !.. !.!!:!!!! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLe 1134 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTT : 1074 186 : eIleGlyThrLeuThrValIleAlaThrGlyThrLeuMetLeuMetPhePheGlnHisAlaC : 206 .|||! !..!:!!..! ! !||| !! !||| ! :!!:!:.!. ! ||||||.!!| uIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrC 1073 : GATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTT : 1011 207 : ysGlyMetPheLysIleAla : 212 |||||:!!||| :!:||| ysGlyLeuPheAlaValAla 1010 : GCGGACTGTTCGCCGTGGCC : 991 vulgar: CbirOr359 164 212 . LHQN01027734.1 1134 990 - 104 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 991 1134 104 - . gene_id 1 ; sequence CbirOr359 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 991 1134 . - . LHQN01027734.1 exonerate:protein2genome:local exon 991 1134 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 991 1134 104 - . alignment_id 1 ; Query CbirOr359 ; Align 1135 165 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr359 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 142 -> 212 Target range: 5633 -> 5423 143 : ProTyrLeuAspAspValThrProIleAsnGlyCysArgLeuHisArgLeuTyrIleAlaVa : 163 ||| !|||||| !:!!! !|||:!:|||! ! ||| !!.. !!!! ! ! !!!. ProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAl 5633 : CCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGC : 5573 164 : lGluTyrPheIleAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnValAlaL : 184 ! ! ||||||:!!|||:!!!!:|||||| !|||:!!|||:!! |||||| !!:!!!.!: aTyrTyrPheValAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValV 5572 : TTACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAG : 5510 185 : euPheIleGlyThrLeuThrValIleAlaThrGlyThrLeuMetLeuMetPhePheGlnHis : 204 !! ! !!: !! !! !..! !! !||| !! !.!! ! :!! ! ! |||||| alValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHis 5509 : TGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACAC : 5450 205 : AlaCysGlyMetPheLysIleAla : 212 |||||||||:!!!!. |||||| AlaCysGlyLeuLeuAlaIleAla 5449 : GCTTGCGGATTGTTGGCCATTGCA : 5424 vulgar: CbirOr359 142 212 . LHQN01028732.1 5633 5423 - 107 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5424 5633 107 - . gene_id 1 ; sequence CbirOr359 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5424 5633 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5424 5633 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5424 5633 107 - . alignment_id 1 ; Query CbirOr359 ; Align 5634 143 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr356 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 140 -> 215 Target range: 5645 -> 5423 141 : ProPheSerProArgIleLeuAspIleLeuTrpProValAsnGluSerArgGlnArgProSe : 161 |||||| ! !!! !||||||||||||||| !|||:!!||||||!!!||| !||| ! ProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArg---Le 5645 : CCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGG---TT : 5588 162 : rLeuLeuPheMetThrGluTyrPheValAspGlnGluArgTyrPheTyrLeuIlePheLeuH : 182 !!!!:!!!:! .!! ! ||||||||||||:!!!!:!:!||| !||||||||| ! !| uPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuIleValGlyH 5587 : GTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGC : 5525 183 : isAlaAsnValAlaIleCysIleGlyGlyPheValMetLeuAlaThrGlyThrIleLeuIle : 202 || ! !!:!!!.!:!: !!: ! !! !|||.!.! !||| !! !.!!! !! !:!: isMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrVal 5524 : ATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTG : 5465 203 : ThrTyrPheGlnHisAlaCysGlyMetPheArgIleAla : 215 ! ! ! |||||||||||||||:!!!!. !|||||| TyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla 5464 : TACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCA : 5424 vulgar: CbirOr356 140 215 . LHQN01028732.1 5645 5423 - 120 M 19 57 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5424 5645 120 - . gene_id 1 ; sequence CbirOr356 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5424 5645 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5424 5645 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5424 5645 120 - . alignment_id 1 ; Query CbirOr356 ; Align 5646 141 57 ; Align 5589 161 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr358 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 127 -> 232 Target range: 5684 -> 5369 128 : ValPheValGlyIleThrLysLeuAlaPheTrpAlaValGlnIleValIleProTyrLeuAs : 148 ||| !:!!..!:!! ! ! !||| !..!:!!! !.!!||| ||| !||||| ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAs 5684 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGA : 5624 149 : pAsnValAlaProIleAsnGlyCysArgProArgArgLeuTyrIleAspValGluTyrPheI : 169 |! !:!! !|||:!:|||! ! ||| !!||| !!!! ! ! !.! ! ||||||: pIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheV 5623 : CATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCG : 5561 170 : leAspGlnGluLysTyrTyrTyrValIleLeuIleHisMetAsnAlaAlaLeuPheIleGly : 189 !!|||:!!!!:|||||| !|||:!!|||:!! |||||| !! !!.!:!! ! !!: ! alAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeu 5560 : TCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTT : 5501 190 : IleLeuThrLeuLeuAlaThrGlyThrLeuMetValMetPhePheGlnHisAlaCysGlyMe : 210 |||! !..!!!!! !||| !! !.!! ! ||| ! ! |||||||||||||||:! IleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLe 5500 : ATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATT : 5438 211 : tPheLysIleAlaCysTyrArgIleGluHisAlaIleGluIleAsnAlaLeuLysAsnIleA : 231 !!!. |||||| ! !! !:!!:!! !:!! ! !|||!.!!!! !!! !| uLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGluAsnGlyPheLeuTyrArgA 5437 : GTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAATGGTTTTCTTTATAGAA : 5375 232 : snPhe : 232 ||||| snPhe 5374 : ATTTC : 5370 vulgar: CbirOr358 127 232 . LHQN01028732.1 5684 5369 - 131 M 105 315 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5370 5684 131 - . gene_id 1 ; sequence CbirOr358 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5370 5684 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5370 5684 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5370 5684 131 - . alignment_id 1 ; Query CbirOr358 ; Align 5685 128 315 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr352PSE Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 132 -> 213 Target range: 463 -> 703 133 : IleValPheTyrSerPheLeuProLeuTrpProGlnIleLeuSerThrValLeuProIleAsnV : 154 :!!:!! !!:! !||||||! !:!! ||||||||||||.!!! !:!!! !|||:!!!.!! LeuLeuGlyPheValPheLeuGlnIleLeuProGlnIleLeuGlyIleIleSerProLeuThrG 464 : CTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAATTTTAGGCATAATTTCACCTCTAACCG : 527 155 : alSerGlnThrGlnArgIleMetLeuIleMetThrGluTyrPheValAspGlnGluArgTyrPh : 175 !! !.!.|||.!.!:! :!:|||:!! |||||||||||||||||| ! :!! !|||.! luIleAsnThrAsnLys---LeuLeuValArgThrGluTyrPheValAspTyrLysAspTyrIl 528 : AGATCAATACTAACAAA---TTACTCGTTCGAACCGAATACTTTGTCGACTACAAAGATTACAT : 587 176 : eTyrLeuLeuLeuLeuHisIleAsnThrAlaThrTyrIleGlyLeuIleValAlaIleAlaThr : 196 !||||||:!! !:!!||| !.!! !|||! ! !.!!:!!! !:!! !|||::!!:! eTyrLeuIleThrIleHisAlaThrIleAlaIleMetCysSerValThrMetGlnIleSerSer 588 : TTATCTAATCACGATCCACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGC : 650 197 : GlyThrValLeuLeuGlyCysIleIleHisAlaCysGlyLeuPheSerIle : 213 ! !! ::: :::!!:||| ! !!|||:!!|||..!:!! AspIleLeuAsnAsnIlePheMetMetHisIleSerGlyMetPheGluVal 651 : GATAttttgaataacatatttatGATGCACATCAGTGGAATGTTCGAGGTA : 703 vulgar: CbirOr352PSE 132 213 . LHQN01050134.1 463 703 + 109 M 27 81 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 464 703 109 + . gene_id 1 ; sequence CbirOr352PSE ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 464 703 . + . LHQN01050134.1 exonerate:protein2genome:local exon 464 703 . + . insertions 0 ; deletions 1 LHQN01050134.1 exonerate:protein2genome:local similarity 464 703 109 + . alignment_id 1 ; Query CbirOr352PSE ; Align 464 133 81 ; Align 545 161 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr356 Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 123 -> 214 Target range: 433 -> 703 124 : AlaIlePheThrLeuLeuAlaIlePheIleAlaPheGlyLeuIleLeuTyrProPheSerProA : 145 :!!|||.!! !!:!!!!!:!!.!!!!.:!! !.!!|||!!!:!!!!!! ! !.!! !|||! SerIleIleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuProG 434 : TCCATTATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGC : 497 146 : rgIleLeuAspIleLeuTrpProValAsnGluSerArgGlnArgProSerLeuLeuPheMetTh : 166 :!||||||! !|||:!!! |||:!!!.!|||! !!.! !.! !.!|||||| !! || lnIleLeuGlyIleIleSerProLeuThrGluIleAsnThrAsn---LysLeuLeuValArgTh 498 : AAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAAC---AAATTACTCGTTCGAAC : 557 167 : rGluTyrPheValAspGlnGluArgTyrPheTyrLeuIlePheLeuHisAlaAsnValAlaIle : 187 |||||||||||||||| ! :!! !|||.!!||||||||| :!!||||||!.!:!!|||||| rGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAlaThrIleAlaIle 558 : CGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCGACTATAGCAATA : 620 188 : CysIleGlyGlyPheValMetLeuAlaThrGlyThrIleLeuIleThrTyrPheGlnHisAlaC : 209 !.!!! ! !:!!...:!!::!!:!! !! ::: :::.....!||| ! MetCysSerValThrMetGlnIleSerSerAspIleLeuAsnAsnIlePheMetMetHisIleS 621 : ATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaataacatatttatGATGCACATCA : 686 210 : ysGlyMetPheArgIle : 214 !!|||||||||..!:!! erGlyMetPheGluVal 687 : GTGGAATGTTCGAGGTA : 703 vulgar: CbirOr356 123 214 . LHQN01050134.1 433 703 + 124 M 36 108 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 434 703 124 + . gene_id 1 ; sequence CbirOr356 ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 434 703 . + . LHQN01050134.1 exonerate:protein2genome:local exon 434 703 . + . insertions 0 ; deletions 1 LHQN01050134.1 exonerate:protein2genome:local similarity 434 703 124 + . alignment_id 1 ; Query CbirOr356 ; Align 434 124 108 ; Align 542 161 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr345 Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 123 -> 213 Target range: 436 -> 703 124 : IleLeuThrLeuPheAlaValCysCysValIleIleIleThrValLeuProPheLeuProTrpI : 145 |||:!! !!:!!|||:!! !!! :!!:!! !.!!..! !!|||! !.!!|||||| | IleIleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuProGlnI 437 : ATTATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAA : 500 146 : leLeuGlyThrPheLeuLeuAlaAsnGluSerArgProPheHisAsnMetLeuIleValThrGl : 166 ||||||||! !.!!! !! ! !!.!|||! !!.! !! :!!!!.:!:|||:!! !||||| leLeuGlyIleIleSerProLeuThrGluIleAsnThr---AsnLysLeuLeuValArgThrGl 501 : TTTTAGGCATAATTTCACCTCTAACCGAGATCAATACT---AACAAATTACTCGTTCGAACCGA : 560 167 : uTyrPheValAspLysGluLysHisPheTyrLeuIleIleLeuHisThrTyrAlaSerIleTyr : 187 ||||||||||||| ! :!! ! :!!.!!|||||||||! :!!|||.!! ! !:!!||| uTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAlaThrIleAlaIleMet 561 : ATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCGACTATAGCAATAATG : 623 188 : IleGlyValThrAlaMetValGlyGlyGlyMetMetLeuAlaSerTyrLeuLysHisIleCysG : 209 !.!!|||||| !...:!!.!!.!!! !!::::: :::::!! !|||||| !!| CysSerValThrMetGlnIleSerSerAspIleLeuAsnAsnIlePheMetMetHisIleSerG 624 : TGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaataacatatttatGATGCACATCAGTG : 689 210 : lyLeuPheSerIle : 213 ||:!!|||..!:!! lyMetPheGluVal 690 : GAATGTTCGAGGTA : 703 vulgar: CbirOr345 123 213 . LHQN01050134.1 436 703 + 113 M 34 102 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 437 703 113 + . gene_id 1 ; sequence CbirOr345 ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 437 703 . + . LHQN01050134.1 exonerate:protein2genome:local exon 437 703 . + . insertions 0 ; deletions 1 LHQN01050134.1 exonerate:protein2genome:local similarity 437 703 113 + . alignment_id 1 ; Query CbirOr345 ; Align 437 124 102 ; Align 539 159 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr340 Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 123 -> 225 Target range: 436 -> 742 124 : IleIleThrSerPheThrAlaCysSerValLeuIleLeuSerLeuLeuProLeuLeuProCysI : 145 |||||| !! !|||:!! !! !:!!||| !!!! !!!!|||! !:!!|||||| | IleIleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuProGlnI 437 : ATTATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAA : 500 146 : leLeuGlyThrPheLeuPheAlaAsnGluSerHisProLeuTyrAsnIleIleGluThrGluTy : 166 ||||||||! !.!!! ! ! !!.!|||! !:!! !! ! ! :!!:!!..!|||||||| leLeuGlyIleIleSerProLeuThrGluIleAsnThrAsnLysLeuLeuValArgThrGluTy 501 : TTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAACAAATTACTCGTTCGAACCGAATA : 563 167 : rPheValAspGluGluLysThrPheTyrLeuThrLeuLeuHisThrTyrAlaSerLeuTyrIle : 187 |||||||||| ! :!! ! !.!!||||||! ! !:!!|||.!! ! !:!!:!! ! rPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAlaThrIleAlaIleMetCys 564 : CTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCGACTATAGCAATAATGTGT : 626 188 : GlyValThrAlaThrValGlyGlyGlyLeuValValLeuThrTyrIleIleHisIleCysGlyL : 209 .!!|||||| ! !:!!.!!.!!! !:::::: ::::::!!:|||||| !!|||: SerValThrMetGlnIleSerSerAspIleLeuAsnAsnIlePheMetMetHisIleSerGlyM 627 : AGTGTGACTATGCAAATTAGCAGCGATAttttgaataacatatttatGATGCACATCAGTGGAA : 692 210 : euPheSerIleAlaArgTyrArgMetAsnGlnLeuLeuIleLeuAsnIle : 225 !!|||..!:!! ! !!!! ...|||::: !||||||:!! etPheGluValIleGly***ValGlnAsnLysTyrLysAspLeuAsnLeu 693 : TGTTCGAGGTAATTGGGTAAgttcaaaataaatataaggATTTGAATCTA : 742 vulgar: CbirOr340 123 225 . LHQN01050134.1 436 742 + 112 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 437 742 112 + . gene_id 1 ; sequence CbirOr340 ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 437 742 . + . LHQN01050134.1 exonerate:protein2genome:local exon 437 742 . + . insertions 0 ; deletions 0 LHQN01050134.1 exonerate:protein2genome:local similarity 437 742 112 + . alignment_id 1 ; Query CbirOr340 ; Align 437 124 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr342CTE Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 141 -> 214 Target range: 487 -> 703 142 : PheLeuProCysIleLeuHisValIleLeuProAlaAsnLysSerGlyProHisProSerLeuH : 163 .!!|||||| |||||| !:!!|||! !||| !!.!:!!! !..! !!:!! !.!|||! IleLeuProGlnIleLeuGlyIleIleSerProLeuThrGluIleAsnThrAsn---LysLeuL 488 : ATTCTCCCGCAAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAAC---AAATTAC : 548 164 : isIleMetThrGluTyrPheIleAspGlnGluLysTyrPheTyrLeuLeuValMetHisLysGl : 184 !:!! ||||||||||||:!!||| ! :!! ! |||.!!||||||:!!..!!!:||| ! euValArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAlaTh 549 : TCGTTCGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCGAC : 611 185 : uValAlaSerCysIleGlyThrThrAlaIleIleAlaThrGlyThrMetAsnMetIlePheLeu : 205 :!!|||! ! !.!!..!||| ! !|||::!!:!! !! :::||| ||||||::! rIleAlaIleMetCysSerValThrMetGlnIleSerSerAspIleLeuAsnAsnIlePheMet 612 : TATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaataacatatttatG : 674 206 : GlnHisAlaCysGlyMetPheMetIle : 214 ..!||| ! !!||||||||| !:!! MetHisIleSerGlyMetPheGluVal 675 : ATGCACATCAGTGGAATGTTCGAGGTA : 703 vulgar: CbirOr342CTE 141 214 . LHQN01050134.1 487 703 + 117 M 18 54 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 488 703 117 + . gene_id 1 ; sequence CbirOr342CTE ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 488 703 . + . LHQN01050134.1 exonerate:protein2genome:local exon 488 703 . + . insertions 0 ; deletions 1 LHQN01050134.1 exonerate:protein2genome:local similarity 488 703 117 + . alignment_id 1 ; Query CbirOr342CTE ; Align 488 142 54 ; Align 542 161 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr366PI Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 289 -> 340 Target range: 358639 -> 358792 290 : IleIleThrTyrAsnAlaSerTrpTyrLeuAlaProIleArgIleGlnLysLeuIleL : 309 :!! !! !|||!:!:!!.!!|||||| !||| !!:!:! ! !|||||| !:!:| LeuTyrArgTyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuL 358640 : CTTTATAGGTACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGT : 358697 310 : euPheLeuLeuGlnArgSerAsnLysIlePheThrLeuSerValGlyGlyLeuPheTh : 328 ||!:!:!!:!!|||!.!|||! :!! !!:!!.!!!!|||:!!||||||||||||.. euTyrIleMetGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheVa 358698 : TATACATCATGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGT : 358754 329 : rAlaSerLeuGluCysPheThrThrLeuValSerAla : 340 ! !!|||! !:!! ! |||:!!|||:!!..!..!:!! lProSerTyrGlnGlyPheSerThrValThrAspSer 358755 : GCCGAGTTACCAAGGATTTTCTACGGTAACAGATTCT : 358792 vulgar: CbirOr366PI 289 340 . KQ414693.1 358639 358792 + 102 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358640 358792 102 + . gene_id 1 ; sequence CbirOr366PI ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 358640 358792 . + . KQ414693.1 exonerate:protein2genome:local exon 358640 358792 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358640 358792 102 + . alignment_id 1 ; Query CbirOr366PI ; Align 358640 290 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr379PSE(F) Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 286 -> 383 Target range: 358197 -> 358792 287 : IlePheHisIleGluProAspLysGlnGluIleGluValThrLeuSerHisLeuIleI : 306 :!: !!!.|||:!! ! ::!....!.:!::!!:!! !:!! !.!.:!! !! ValThrGlnIleLysMetProArgSerAsnLeuGlnLeuLeuIleLeuGluValSerM 358198 : GTGACTCAAATAAAAATGCCACGAAGTAACTTGCAGTTACTGATCCTAGAAGTGTCTA : 358255 307 : leLeuCysPheValPheAlaTyrMetPheLeuAlaAsnTyrAlaGlyGlnGluIleMe : 325 !::!! ! !|||||||||:!!||||||.!!|||:!! !|||||| !||||| etIleLeuAlaCysPheAlaTyrLeuPheLeuThrAsnHisMetGlyGlnThrIleMe 358256 : TGATTCTCGCGTGCTTCGCGTACTTGTTTCTGACCAATCACATGGGACAAACGATCAT : 358312 326 : tAspTyrAsnAsnHisValPheLeuThr{Va} >>>> Target Intron 1 >>> : 335 |||| !!:!::: ! :!!.!! ! !{!.} 304 bp tAspSerSerSerLysLeuLeuGlyGlu{Al}++ 358313 : GGACAGTAGCTCGAAACTTCTTGGCGAA{GC}gt........................ : 358346 336 : > {l}TyrAsnAlaProTrpTyrLeuAlaProLeuGluIleGlnLysLeuIleLeuI : 353 {!}|||!:!:!! !|||||| !||| !!:!! !|||||| !:!:||| ++{a}TyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuLeuT 358347 : .ag{G}TACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGTTAT : 358700 354 : leLeuLeuGlnArgSerAsnLysAlaPheThrLeuSerIleGlyGlyLeuPheThrLe : 372 !:!!:!!|||!.!|||! :!!! !!:!!.!!!!||||||||||||||||||..!! yrIleMetGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheValPr 358701 : ACATCATGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGTGCC : 358757 373 : uSerLeuGluCysPheAlaSerLeuAlaSerAla : 383 !|||! !:!! ! |||:!!!!!:!!.!!..!:!! oSerTyrGlnGlyPheSerThrValThrAspSer 358758 : GAGTTACCAAGGATTTTCTACGGTAACAGATTCT : 358792 vulgar: CbirOr379PSE(F) 286 383 . KQ414693.1 358197 358792 + 143 M 48 144 S 0 2 5 0 2 I 0 300 3 0 2 S 1 1 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358198 358792 143 + . gene_id 1 ; sequence CbirOr379PSE(F) ; gene_orientation + KQ414693.1 exonerate:protein2genome:local cds 358198 358343 . + . KQ414693.1 exonerate:protein2genome:local exon 358198 358343 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local splice5 358344 358345 . + . intron_id 1 ; splice_site "GT" KQ414693.1 exonerate:protein2genome:local intron 358344 358647 . + . intron_id 1 KQ414693.1 exonerate:protein2genome:local splice3 358646 358647 . + . intron_id 0 ; splice_site "AG" KQ414693.1 exonerate:protein2genome:local cds 358648 358792 . + . KQ414693.1 exonerate:protein2genome:local exon 358648 358792 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358198 358792 143 + . alignment_id 1 ; Query CbirOr379PSE(F) ; Align 358198 287 144 ; Align 358649 336 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr360 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 134 -> 213 Target range: 18042 -> 17805 135 : LeuPheValValIleHisPheTrpSerAspValLeuAspValIlePheGlnIleAsnIle : 154 ||||||:!! !:!:! !::! !!!! :!!:!!:!! ! ! ! |||||| LeuPheIleGlnValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIle 18042 : TTGTTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATA : 17985 155 : SerArgSerHisAsnLeuProIleIleThrGluTyrPheIleAsnGlnGluLysTyrTyr : 174 !!!! !||| .!.!!! !||| ! ! ! ||||||:!!:!!:!!! !:!!|||||| ThrProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyr 17984 : ACGCCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTAT : 17925 175 : TyrLeuIleLeuMetHisLeuAlaIleAlaValTyrIleGlyIleIleValThrLeuAla : 194 |||! !|||:!!:!:||| !.!! !.!!:!!! |||! !:!::!:||| !! !||| TyrTyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAla 17924 : TATTACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCC : 17865 195 : ValGlyThrMetLeuIleAlaPheTyrHisAsnThrCysGlyValPheArgIleAla : 213 !! !|||! ! !!!:!.!.!. !!.:!!|||||||||:!!||| !:!:||| CysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAla 17864 : TGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCC : 17806 vulgar: CbirOr360 134 213 . KQ414772.1 18042 17805 - 105 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17806 18042 105 - . gene_id 1 ; sequence CbirOr360 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17806 18042 . - . KQ414772.1 exonerate:protein2genome:local exon 17806 18042 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17806 18042 105 - . alignment_id 1 ; Query CbirOr360 ; Align 18043 135 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr364PNC Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 113 -> 170 Target range: 17976 -> 17805 114 : SerHisArgLeuCysIleAlaAlaAspTyrPheThrAspGlnGlnTyrTyrTyrTyrThr : 133 ||| !:!!!! !||| !!!.! !!||||||..!|||:!! ! ! ||||||||| ! SerLeuGlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyrTyrTyr 17976 : AGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTATTAC : 17919 134 : IleValLeuCysMetThrAlaAlaValSerIleGlyValLeuThrIleIleAlaThrGly : 153 |||:!!||| ! |||..!.!!:!!! !|||! !|||:!!..! ! !||| !! ! IleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCysAsp 17918 : ATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGAC : 17859 154 : ThrLeuMetIleValTyrLeuGlnHisThrCysGlyMetPheArgIleAla : 170 ||| ! !!:||| :!!|||||||||||||||:!!||| !:!:||| ThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAla 17858 : ACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCC : 17806 vulgar: CbirOr364PNC 113 170 . KQ414772.1 17976 17805 - 108 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17806 17976 108 - . gene_id 1 ; sequence CbirOr364PNC ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17806 17976 . - . KQ414772.1 exonerate:protein2genome:local exon 17806 17976 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17806 17976 108 - . alignment_id 1 ; Query CbirOr364PNC ; Align 17977 114 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr375 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 120 -> 219 Target range: 14178 -> 13884 121 : HisIleThrThrIleValIleIleLeuLeuValCysCysLeuPheGlyAsnSerValIle : 140 :!!|||..!! ! ! !|||:!: ! !:!! !|||:!!.!! ! ! !..!! TyrIleValLysTyrSerIleValAsnAlaIleValCysValIleLeuPheValThrThr 14178 : TACATTGTCAAATATTCGATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGACCACG : 14121 141 : ValTyrTrpProTyrIleLeuAspIleIleIleProArgAsnGluSerTyrAlaIleHis : 160 ! |||:!!||||||||||||:!!:!!|||!:!||||||||| ! !:!! ProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAla 14120 : CCGGTGACACCGCATATTTTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCG : 14061 161 : MetMetGlnPheValThrThrTyrPheAsnValSerGluLysTyrTyrPheLeuIleVal : 180 !!: !:! !.!! !||||||!.!! !..!.!.|||||| !! ! ! !|||:!! TyrIle---TyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIle 14060 : TACATT---TACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATT : 14004 181 : ValHisLeuAsnAlaAlaSerThrIleGlyLeuIleValCysValGlyThrGlyThrMet : 200 ..!|||:!! :!!!.!! ! !:!:! !!!! !|||! !|||!.! !! !|||! ThrHisMetAlaSerValIleLeuValValPheTyrValTyrValAlaCysAspThrSer 14003 : ACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGT : 13944 201 : LeuPheSerTyrLeuGlnHisIleCysGlyMetPheGluIleAlaSerTyrArgIle : 219 ! !.!.! ! !:!!|||||| !||||||:!!!!.! :!::!!.!. :::||| TyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly***LysIle 13943 : TACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaatt : 13885 vulgar: CbirOr375 120 219 . KQ414772.1 14178 13884 - 100 M 42 126 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13885 14178 100 - . gene_id 1 ; sequence CbirOr375 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13885 14178 . - . KQ414772.1 exonerate:protein2genome:local exon 13885 14178 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 13885 14178 100 - . alignment_id 1 ; Query CbirOr375 ; Align 14179 121 126 ; Align 14053 164 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr371PSE(F) Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 159 -> 214 Target range: 17970 -> 17805 160 : GlnLeuTyrIleValAlaGluTyrPheIleAspGlnGlnLysTyrTyrTyrValIleLeu : 179 |||!!! !||| !!.! ! ||||||:!!|||:!! !:!!||||||||| !|||:!! GlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIle 17970 : CAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATA : 17913 180 : LeuHisMetAsnAlaAlaLeuPheIleGlyIleLeuThrLeuIleAlaMetGlyThrLeu : 199 |||||| !....!.!!:!!!!.|||! !:!::!!..!! ! !||| ! !||| ! LeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCysAspThrSer 17912 : CTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGT : 17853 200 : LeuIleAlaTyrLeuGlnHisThrCysGlyMetPheLysIleAla : 214 ! !!!:!.! :!!|||||||||||||||:!!||| :!:||| TyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAla 17852 : TACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCC : 17806 vulgar: CbirOr371PSE(F) 159 214 . KQ414772.1 17970 17805 - 119 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17806 17970 119 - . gene_id 1 ; sequence CbirOr371PSE(F) ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17806 17970 . - . KQ414772.1 exonerate:protein2genome:local exon 17806 17970 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17806 17970 119 - . alignment_id 1 ; Query CbirOr371PSE(F) ; Align 17971 160 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr363 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 166 -> 214 Target range: 17949 -> 17805 167 : TyrPheIleAspGlnGlnLysTyrTyrTyrValIleLeuLeuHisMetAsnAlaAlaIle : 186 ||||||:!!|||:!! !:!!||||||||| !|||:!!|||||| !....!.!!||| TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIle 17949 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATT : 17892 187 : PheIleGlyValLeuThrPheLeuAlaMetGlyThrLeuMetIleAlaTyrLeuGlnHis : 206 !!.|||! !|||:!!..!!:!! !||| ! !||| ! !!:!.! :!!|||||| LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 17891 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 17832 207 : ThrCysGlyMetPheThrIleAla : 214 |||||||||:!!|||.!!:!:||| ThrCysGlyLeuPheAlaValAla 17831 : ACTTGCGGACTGTTCGCCGTGGCC : 17806 vulgar: CbirOr363 166 214 . KQ414772.1 17949 17805 - 123 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17806 17949 123 - . gene_id 1 ; sequence CbirOr363 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17806 17949 . - . KQ414772.1 exonerate:protein2genome:local exon 17806 17949 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17806 17949 123 - . alignment_id 1 ; Query CbirOr363 ; Align 17950 167 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr371PSE(F) Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 166 -> 214 Target range: 18333 -> 18189 167 : TyrPheIleAspGlnGlnLysTyrTyrTyrValIleLeuLeuHisMetAsnAlaAlaLeu : 186 ||||||:!!|||:!! !:!!||||||||| !|||:!!|||||| !....!.!!:!! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIle 18333 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATT : 18276 187 : PheIleGlyIleLeuThrLeuIleAlaMetGlyThrLeuLeuIleAlaTyrLeuGlnHis : 206 !!.|||! !:!::!!..!! ! !||| ! !||| !! !!!:!.! :!!|||||| LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 18275 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 18216 207 : ThrCysGlyMetPheLysIleAla : 214 |||||||||:!!||| :!:||| ThrCysGlyLeuPheAlaValAla 18215 : ACTTGCGGACTGTTCGCCGTGGCC : 18190 vulgar: CbirOr371PSE(F) 166 214 . LHQN01017803.1 18333 18189 - 115 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18190 18333 115 - . gene_id 1 ; sequence CbirOr371PSE(F) ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18190 18333 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18190 18333 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18190 18333 115 - . alignment_id 1 ; Query CbirOr371PSE(F) ; Align 18334 167 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr363 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 166 -> 214 Target range: 18333 -> 18189 167 : TyrPheIleAspGlnGlnLysTyrTyrTyrValIleLeuLeuHisMetAsnAlaAlaIle : 186 ||||||:!!|||:!! !:!!||||||||| !|||:!!|||||| !....!.!!||| TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIle 18333 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATT : 18276 187 : PheIleGlyValLeuThrPheLeuAlaMetGlyThrLeuMetIleAlaTyrLeuGlnHis : 206 !!.|||! !|||:!!..!!:!! !||| ! !||| ! !!:!.! :!!|||||| LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 18275 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 18216 207 : ThrCysGlyMetPheThrIleAla : 214 |||||||||:!!|||.!!:!:||| ThrCysGlyLeuPheAlaValAla 18215 : ACTTGCGGACTGTTCGCCGTGGCC : 18190 vulgar: CbirOr363 166 214 . LHQN01017803.1 18333 18189 - 123 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18190 18333 123 - . gene_id 1 ; sequence CbirOr363 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18190 18333 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18190 18333 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18190 18333 123 - . alignment_id 1 ; Query CbirOr363 ; Align 18334 167 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr364PNC Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 122 -> 170 Target range: 18333 -> 18189 123 : TyrPheThrAspGlnGlnTyrTyrTyrTyrThrIleValLeuCysMetThrAlaAlaVal : 142 ||||||..!|||:!! ! ! ||||||||| !|||:!!||| ! |||..!.!!:!! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIle 18333 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATT : 18276 143 : SerIleGlyValLeuThrIleIleAlaThrGlyThrLeuMetIleValTyrLeuGlnHis : 162 ! !|||! !|||:!!..! ! !||| !! !||| ! !!:||| :!!|||||| LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 18275 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 18216 163 : ThrCysGlyMetPheArgIleAla : 170 |||||||||:!!||| !:!:||| ThrCysGlyLeuPheAlaValAla 18215 : ACTTGCGGACTGTTCGCCGTGGCC : 18190 vulgar: CbirOr364PNC 122 170 . LHQN01017803.1 18333 18189 - 107 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18190 18333 107 - . gene_id 1 ; sequence CbirOr364PNC ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18190 18333 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18190 18333 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18190 18333 107 - . alignment_id 1 ; Query CbirOr364PNC ; Align 18334 123 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr360 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 134 -> 213 Target range: 18426 -> 18189 135 : LeuPheValValIleHisPheTrpSerAspValLeuAspValIlePheGlnIleAsnIle : 154 ||||||:!! !:!:! !::! !!!! :!!:!!:!! ! ! ! |||||| LeuPheIleGlnValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIle 18426 : TTGTTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATA : 18369 155 : SerArgSerHisAsnLeuProIleIleThrGluTyrPheIleAsnGlnGluLysTyrTyr : 174 !!!! !||| :!! !:!! ! ! ! ||||||:!!:!!:!!! !:!!|||||| ThrProSerLeuProValValValProGlyTyrTyrPheValAspGluValGluTyrTyr 18368 : ACGCCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTAT : 18309 175 : TyrLeuIleLeuMetHisLeuAlaIleAlaValTyrIleGlyIleIleValThrLeuAla : 194 |||! !|||:!!:!:||| !.!! !.!!:!!! |||! !:!::!:||| !! !||| TyrTyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAla 18308 : TATTACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCC : 18249 195 : ValGlyThrMetLeuIleAlaPheTyrHisAsnThrCysGlyValPheArgIleAla : 213 !! !|||! ! !!!:!.!.!. !!.:!!|||||||||:!!||| !:!:||| CysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAla 18248 : TGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCC : 18190 vulgar: CbirOr360 134 213 . LHQN01017803.1 18426 18189 - 103 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18190 18426 103 - . gene_id 1 ; sequence CbirOr360 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18190 18426 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18190 18426 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18190 18426 103 - . alignment_id 1 ; Query CbirOr360 ; Align 18427 135 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr379PSE(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 128 -> 215 Target range: 457153 -> 457411 129 : IleIleAlaValCysAsnGlnPheValValValAlaMetGlnCysTrpProTyrIleP : 148 :!! !.!! !|||..! !.!.|||:!!..!.!!:!!||| !!::||| :!!. ValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuL 457154 : GTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTAC : 457211 149 : heTyrValIleLeuProGluAsnGlyThrTyrAlaGlyHisLeuLeuValValValSe : 167 !! !!:!!:!::!!||| !|||! !:!! ! !! !!.!. ||| !:!!..!:! euAspIleValValProLeuAsnGluSerArgProCysGlu---LeuTyrLeuThrAl 457212 : TCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAG---TTATACCTTACAGC : 457265 168 : rLysTyrPheAlaValGlnGluLysTyrSerTyrLeuValLeuLeuHisIleAsnIle : 186 !:!!||||||!.!! !..!:!!||||||! !:!!! !:!!:!! !||||||! !! aGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleThr 457266 : GGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCACG : 457322 187 : AlaIleSerValGlyAlaPheIlePheLeuAlaValGlyThrMetMetLeuSerCysP : 206 ..!:!! !:!!!.!||| !! !!. !||| !! !:!!:!::!::!!!!! ! CysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnV 457323 : TGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACG : 457382 207 : heLysHisIleCysGlyMetPheArgIle : 215 ! !|||:!!||||||:!!|||!:!:!! alLeuHisValCysGlyLeuPheLysLeu 457383 : TACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr379PSE(F) 128 215 . KQ414815.1 457153 457411 + 102 M 33 99 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457154 457411 102 + . gene_id 1 ; sequence CbirOr379PSE(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457154 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457154 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457154 457411 102 + . alignment_id 1 ; Query CbirOr379PSE(F) ; Align 457154 129 99 ; Align 457253 163 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr371PSE(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 140 -> 213 Target range: 457192 -> 457411 141 : GlnIleIleIleProTyrLeuAspGlyIleThrProIleAsnGlyCysArgProHisG : 160 |||:!!.!! !! |||||| !:!:..!|||:!:|||! !! |||||| !: GlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysG 457193 : CAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTG : 457250 161 : lnLeuTyrIleValAlaGluTyrPheIleAspGlnGlnLysTyrTyrTyrValIleLe : 179 !!||||||:!!..!||||||||||||:!!|||..!:!!|||||| :!! !|||:! luLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIl 457251 : AGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCAT : 457307 180 : uLeuHisMetAsnAlaAlaLeuPheIleGlyIleLeuThrLeuIleAlaMetGlyThr : 198 ! !|||!!:! !.!!..!|||.!.|||!.! ! !||||||! !|||! ! !:!! eAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSer 457308 : CGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCC : 457364 199 : LeuLeuIleAlaTyrLeuGlnHisThrCysGlyMetPheLysIle : 213 |||||||||.!! !!:!!! !|||..!||||||:!!||||||:!! LeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457365 : TTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr371PSE(F) 140 213 . KQ414815.1 457192 457411 + 162 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457193 457411 162 + . gene_id 1 ; sequence CbirOr371PSE(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457193 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457193 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457193 457411 162 + . alignment_id 1 ; Query CbirOr371PSE(F) ; Align 457193 141 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr371PSE(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 146 -> 213 Target range: 485725 -> 485926 147 : LeuAspGlyIleThrProIleAsnGlyCysArgProHisGlnLeuTyrIleValAlaG : 166 |||||| !:!:! !|||:!:||| ! !||||||!.. !:!! !||| !:!!| LeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnSerG 485726 : CTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACTCGG : 485783 167 : luTyrPheIleAspGlnGlnLysTyrTyrTyrValIleLeuLeuHisMetAsnAlaAl : 185 ||:!!|||:!!|||||||||||||||!:!||| !||| ! !|||:!: ! ! luHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLeuPh 485784 : AACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCTCTT : 485840 186 : aLeuPheIleGlyIleLeuThrLeuIleAlaMetGlyThrLeuLeuIleAlaTyrLeu : 204 !:!!.!!|||||| :!!..!|||:!!::! |||::::::||| :!! eValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIleIle 485841 : CGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATAATA : 485897 205 : GlnHisThrCysGlyMetPheLysIle : 213 |||||||||||||||:!!!:!! !||| GlnHisThrCysGlyLeuTyrThrIle 485898 : CAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr371PSE(F) 146 213 . KQ414815.1 485725 485926 + 155 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485726 485926 155 + . gene_id 2 ; sequence CbirOr371PSE(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485726 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485726 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485726 485926 155 + . alignment_id 2 ; Query CbirOr371PSE(F) ; Align 485726 147 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr371PSE(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 124 -> 222 Target range: 448028 -> 448322 125 : AlaLeuIleValPhePheValIleAlaLysSerAlaPheTrpAlaSerGlnIleIleI : 144 ...::: ||| ! |||!.!:!::!! !! !::!||| ! !:!!.!!:!:: ThrIleSerValValPheAlaLeuSerLeuIleSerPheThrLeuValGluPheValV 448029 : acaatttcagtGGTGTTTGCCTTGTCTTTAATTAGCTTTACCTTGGTTGAGTTCGTGG : 448086 145 : leProTyrLeuAspGlyIleThrProIleAsnGlyCysArgProHisGlnLeuTyrIl : 163 !! :::|||||| :::! !|||!!:|||! !! !! !! !|||:!!||| !.! alHisPheLeuAspIleLeuMetProMetAsnValSerThrArgHisGluLeuProPh 448087 : TAcattttctcgatattttaATGCCAATGAACGTATCTACACGGCACGAGCTACCCTT : 448143 164 : eValAlaGluTyrPheIleAspGlnGlnLysTyrTyrTyrValIleLeuLeuHisMet : 182 !:!! !:!!! !||| !||||||.!.|||!:!!:!:!! !||||||:!! !:!! eLeuIleGlnCysPheCysAspGlnAspLysPhePheHisTyrIleLeuValPheLeu 448144 : CCTAATTCAATGTTTCTGTGATCAAGATAAATTCTTCCACTATATATTAGTTTTCTTG : 448200 183 : AsnAlaAlaLeuPheIleGlyIleLeuThrLeuIleAlaMetGlyThrLeuLeuIleA : 202 ! !!.! ! !.!!:!:||| ! !..!:!!:!!|||! !||| !! !:!: IleValLeuThrIleLeuGlyGlySerValValLeuAlaThrThrThrThrTyrLeuI 448201 : ATCGTTCTCACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAACGACTTACTTGA : 448260 203 : laTyrLeuGlnHisThrCysGlyMetPheLysIleAlaCysTyrArgIleGluHisAl : 221 !!:! !|||||| !||||||:!!|||||||||||| ! !! ..!||| ! !|| lePheSerGlnHisCysCysGlyLeuPheLysIleAlaGly***GluIleMetThrAl 448261 : TATTCAGTCAACATTGTTGTGGATTGTTCAAAATTGCAGGGTAAGAAATTATGACTGC : 448317 222 : aMet : 222 |||| aMet 448318 : TATG : 448322 vulgar: CbirOr371PSE(F) 124 222 . KQ414815.1 448028 448322 + 138 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448029 448322 138 + . gene_id 3 ; sequence CbirOr371PSE(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448029 448322 . + . KQ414815.1 exonerate:protein2genome:local exon 448029 448322 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448029 448322 138 + . alignment_id 3 ; Query CbirOr371PSE(F) ; Align 448029 125 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr371PSE(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 146 -> 213 Target range: 482034 -> 482235 147 : LeuAspGlyIleThrProIleAsnGlyCysArgProHisGlnLeuTyrIleValAlaG : 166 ||||||! !|||..!|||:!!|||! ! !||| !!||||||!!! :!! ! !| LeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMetG 482035 : CTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGG : 482092 167 : luTyrPheIleAspGlnGlnLysTyrTyrTyrValIleLeuLeuHisMetAsnAlaAl : 185 ||||||||||||||||||||||||||! ! !!||| !!!!|||..! !:! luTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSe 482093 : AGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTC : 482149 186 : aLeuPheIleGlyIleLeuThrLeuIleAlaMetGlyThrLeuLeuIleAlaTyrLeu : 204 !!!!.!!:!!! ! ! !! !:!!:!!!.!!!:! !||||||:!!:!! !!::||| rPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeu 482150 : CTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTT : 482206 205 : GlnHisThrCysGlyMetPheLysIle : 213 :!!|||.!!....!!:!!|||! :!! GluHisAlaAlaSerLeuPheThrLeu 482207 : GAACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: CbirOr371PSE(F) 146 213 . KQ414815.1 482034 482235 + 128 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482035 482235 128 + . gene_id 4 ; sequence CbirOr371PSE(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482035 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 482035 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482035 482235 128 + . alignment_id 4 ; Query CbirOr371PSE(F) ; Align 482035 147 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr363 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 146 -> 213 Target range: 485725 -> 485926 147 : LeuAspAspValThrProIleAsnGlyCysArgProHisArgLeuGlnIleAlaValG : 166 |||||| !:!!! !|||:!:||| ! !||||||!..! !:!!! ||| ! !| LeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnSerG 485726 : CTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACTCGG : 485783 167 : luTyrPheIleAspGlnGlnLysTyrTyrTyrValIleLeuLeuHisMetAsnAlaAl : 185 ||:!!|||:!!|||||||||||||||!:!||| !||| ! !|||:!: ! ! luHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLeuPh 485784 : AACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCTCTT : 485840 186 : aIlePheIleGlyValLeuThrPheLeuAlaMetGlyThrLeuMetIleAlaTyrLeu : 204 !:!!.!!||||||!.!:!!..!!!.|||::! |||::::::||| :!! eValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIleIle 485841 : CGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATAATA : 485897 205 : GlnHisThrCysGlyMetPheThrIle : 213 |||||||||||||||:!!!:!|||||| GlnHisThrCysGlyLeuTyrThrIle 485898 : CAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr363 146 213 . KQ414815.1 485725 485926 + 161 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485726 485926 161 + . gene_id 1 ; sequence CbirOr363 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485726 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485726 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485726 485926 161 + . alignment_id 1 ; Query CbirOr363 ; Align 485726 147 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr363 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 146 -> 213 Target range: 482034 -> 482235 147 : LeuAspAspValThrProIleAsnGlyCysArgProHisArgLeuGlnIleAlaValG : 166 ||||||! !:!!..!|||:!!|||! ! !||| !!|||!:!!!!! !:!!:!!:!!| LeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMetG 482035 : CTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGG : 482092 167 : luTyrPheIleAspGlnGlnLysTyrTyrTyrValIleLeuLeuHisMetAsnAlaAl : 185 ||||||||||||||||||||||||||! ! !!||| !!!!|||..! !:! luTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSe 482093 : AGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTC : 482149 186 : aIlePheIleGlyValLeuThrPheLeuAlaMetGlyThrLeuMetIleAlaTyrLeu : 204 !.!!.!!:!!! !!.! !! !.!!:!!!.!!!:! !||||||!!::!! !!::||| rPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeu 482150 : CTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTT : 482206 205 : GlnHisThrCysGlyMetPheThrIle : 213 :!!|||.!!....!!:!!||||||:!! GluHisAlaAlaSerLeuPheThrLeu 482207 : GAACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: CbirOr363 146 213 . KQ414815.1 482034 482235 + 132 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482035 482235 132 + . gene_id 2 ; sequence CbirOr363 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482035 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 482035 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482035 482235 132 + . alignment_id 2 ; Query CbirOr363 ; Align 482035 147 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr363 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 333 -> 387 Target range: 458543 -> 458705 334 : TyrAsnIleArgTrpTyrMetCysProLeuArgIleGlnArgLeuIleLeuLeuLeuL : 353 ||| |||! !|||||| ..!|||||||||||||||!:!! !:!!|||!!!:!!! TyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleS 458544 : TACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATAT : 458601 354 : euGlnArgLysAlaArgGluPheGlnLeuThrCysGlyGlyLeuPheValAlaSerPh : 372 !:!!|||!.. !|||! ! !...||| ! !|||:!!.!!:!!|||||||| erGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPh 458602 : CAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatcctt : 458658 373 : eGluCysPheAlaThrLeuAlaLysAlaThrMetSerTyrPheThr : 387 |||| |||||||||:!!.!!|||:!! !::: :::|||::: eGluPhePheAlaThrValThrLysSerTrpLeu***HisPheSer 458659 : cgaatttttcgccaCGGTAACAAAATCTTGGCtatgacatttttct : 458705 vulgar: CbirOr363 333 387 . KQ414815.1 458543 458705 + 116 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458544 458705 116 + . gene_id 3 ; sequence CbirOr363 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 458544 458705 . + . KQ414815.1 exonerate:protein2genome:local exon 458544 458705 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458544 458705 116 + . alignment_id 3 ; Query CbirOr363 ; Align 458544 334 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr375 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 335 -> 394 Target range: 454310 -> 454562 336 : AsnValAlaTrpTyrLeuAlaProLeuHisIleGlnLysLeuIleLeuLeuLeuLeuG : 355 ||| ! !|||||| !!.!|||||| !! !!:!|||||| !||||||:!!|||| AsnSerHisTrpTyrAspValProLeuAspAlaArgLysLeuTyrLeuLeuIleLeuG 454311 : AATTCACACTGGTACGATGTTCCTCTTGATGCTCGAAAGTTGTACCTACTCATTCTGC : 454368 356 : lnArgSerAsnLysIlePheSerLeuAsnIleTyrGlyLeuPheThrAlaSerLeuGl : 374 ||||||||! |||! !! !|||!!!::!|||! !! !|||!:!..!:!!||||||:! lnArgSerMetLysSerSerSerPheSerIleSerAspLeuTyrValSerSerLeuGl 454369 : AACGAAGTATGAAAAGCTCCTCGTTCTCCATATCCGATTTATACGTTTCGTCGTTACA : 454425 375 : uCysPheAlaThr >>>> Target Intron 1 >>>> LeuValSerAlaSerI : 384 ! ! .!.::!.!! 75 bp |||||||||.!!.!!! nGlyLeuSerAla++ ++LeuValSerThrGlyM 454426 : GGGACTAAGCGCGgt.........................agTTAGTAAGCACGGGCA : 454530 385 : leSerTyrPheThrPheMetTyrSerMetGln : 394 !:|||||||||||||||:!:||||||:!!||| etSerTyrPheThrPheLeuTyrSerValGln 454531 : TGTCGTATTTCACGTTCCTCTATTCCGTGCAA : 454562 vulgar: CbirOr375 335 394 . KQ414815.1 454310 454562 + 130 M 43 129 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 454311 454562 130 + . gene_id 1 ; sequence CbirOr375 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 454311 454439 . + . KQ414815.1 exonerate:protein2genome:local exon 454311 454439 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 454440 454441 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 454440 454514 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 454513 454514 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 454515 454562 . + . KQ414815.1 exonerate:protein2genome:local exon 454515 454562 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 454311 454562 130 + . alignment_id 1 ; Query CbirOr375 ; Align 454311 336 129 ; Align 454515 379 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr370 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 147 -> 213 Target range: 485728 -> 485926 148 : AspIleValIleProIleAsnGlyCysArgProGlnArgLeuSerIleAlaPheGluT : 167 ||||||:!!||||||:!:||| ! !||||||!:!! !:!! !!||| !! |||: AspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnSerGluH 485729 : GACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACTCGGAAC : 485786 168 : yrCysIleHisGlnGlnLysTyrTyrTyrValLeuLeuLeuHisMetAsnAlaAlaAr : 186 !!! !:!! !!||||||||||||!:!||| !:!! ! !|||:!: ! ! ! isPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLeuPheVa 485787 : ATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCTCTTCGT : 485843 187 : gAlaIleGlyIleLeuThrPheIleAlaThrGlyThrLeuMetIleAlaTyrLeuGln : 205 ! !|||||| :!!..!!!.:!!::!||| |||::::::||| :!!||| lIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIleIleGln 485844 : CATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATAATACAG : 485900 206 : HisThrCysGlyMetPheArgIle : 213 ||||||||||||:!!!:!! !||| HisThrCysGlyLeuTyrThrIle 485901 : CACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr370 147 213 . KQ414815.1 485728 485926 + 143 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485729 485926 143 + . gene_id 1 ; sequence CbirOr370 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485729 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485729 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485729 485926 143 + . alignment_id 1 ; Query CbirOr370 ; Align 485729 148 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr370 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 138 -> 213 Target range: 457186 -> 457411 139 : ThrIleGluMetLeuMetProTyrCysAspIleValIleProIleAsnGlyCysArgP : 158 |||:!::!!:!:!!! ! !! !|||||||||:!!|||:!:|||! !! |||| ThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgP 457187 : ACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCC : 457244 159 : roGlnArgLeuSerIleAlaPheGluTyrCysIleHisGlnGlnLysTyrTyrTyrVa : 177 || ..!|||! !:!!.!! ||||||! !:!! !!..!:!!|||||| :!! roCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTy 457245 : CCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTA : 457301 178 : lLeuLeuLeuHisMetAsnAlaAlaArgAlaIleGlyIleLeuThrPheIleAlaThr : 196 !:!!:!! !|||!!:! !.!!..!! ! !|||!.! ! !|||!!.! !|||!.! rIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsn 457302 : TATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAAC : 457358 197 : GlyThrLeuMetIleAlaTyrLeuGlnHisThrCysGlyMetPheArgIle : 213 ! !:!!|||:!:|||.!! !!:!!! !|||..!||||||:!!|||!:!:!! GluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457359 : GAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr370 138 213 . KQ414815.1 457186 457411 + 126 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457187 457411 126 + . gene_id 2 ; sequence CbirOr370 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457187 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457187 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457187 457411 126 + . alignment_id 2 ; Query CbirOr370 ; Align 457187 139 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr368 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 334 -> 388 Target range: 458543 -> 458705 335 : TyrSerValLeuTrpTyrLeuAlaProLeuArgIleGlnLysLeuIleLeuPheValL : 354 |||! !:!!! !||||||! !|||||||||||||||||||||! !:!!||||||:!!! TyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleS 458544 : TACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATAT : 458601 355 : euGlnArgSerAsnLysIlePheIleLeuAsnValGlyGlyLeuPheSerAlaSerLe : 373 !:!!||||||!!.!:!:!: ! !||| !:!! !|||:!!.!!! !||||||.. erGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPh 458602 : CAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatcctt : 458658 374 : uGluCysPheAlaThrLeuIleSerAlaSerIleSerTyrPheThr : 388 .||| |||||||||:!!! !!.!:!!!!!::: :::|||::: eGluPhePheAlaThrValThrLysSerTrpLeu***HisPheSer 458659 : cgaatttttcgccaCGGTAACAAAATCTTGGCtatgacatttttct : 458705 vulgar: CbirOr368 334 388 . KQ414815.1 458543 458705 + 115 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458544 458705 115 + . gene_id 1 ; sequence CbirOr368 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 458544 458705 . + . KQ414815.1 exonerate:protein2genome:local exon 458544 458705 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458544 458705 115 + . alignment_id 1 ; Query CbirOr368 ; Align 458544 335 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr360 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 0 -> 48 Target range: 439271 -> 439415 1 : MetThrArgLeuGluAsnHisPheSerLeuAsnArgIleLeuLeuLeuAlaIleGlyL : 20 ||| ! !!!!.!.!!.!!.!:!!!! ! !!|||:!!:!!|||! ! !:!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 439272 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGCTAGGAC : 439329 21 : euTrpProTyrGluGlnSerIlePheSerArgLeuGlnPheIleLeuPheSerValIl : 39 |||||||||||...|||||||||!:!|||! !:!!!!. |||! !|||:!!..!|| euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 439330 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 439386 40 : eLeuMetSerAlaIleValPheGlnLeu : 48 |:!!:!:|||..!|||:!!|||:!!:!! eMetLeuSerCysIleIlePheGluVal 439387 : TATGCTTTCGTGTATTATATTTGAGGTG : 439415 vulgar: CbirOr360 0 48 . KQ414815.1 439271 439415 + 102 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 439272 439415 102 + . gene_id 1 ; sequence CbirOr360 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 439272 439415 . + . KQ414815.1 exonerate:protein2genome:local exon 439272 439415 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 439272 439415 102 + . alignment_id 1 ; Query CbirOr360 ; Align 439272 1 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr360 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 0 -> 48 Target range: 443381 -> 443525 1 : MetThrArgLeuGluAsnHisPheSerLeuAsnArgIleLeuLeuLeuAlaIleGlyL : 20 ||| ! !!!!.!.!!.!!.!:!!!! ! !!|||:!!:!!|||! ! !:!!|||| MetAspValPheAsnLysGlnTyrArgThrTyrArgLeuMetLeuSerLeuLeuGlyL 443382 : ATGGACGTGTTTAACAAACAATACAGAACCTATCGTCTTATGTTATCCTTGTTAGGAC : 443439 21 : euTrpProTyrGluGlnSerIlePheSerArgLeuGlnPheIleLeuPheSerValIl : 39 |||||||||||...|||||||||!:!|||! !:!!!!. |||! !|||:!!..!|| euTrpProTyrSerGlnSerIleTyrSerThrIleHisArgIleSerPheAlaThrIl 443440 : TCTGGCCTTATTCTCAGTCGATCTACAGTACAATTCACAGGATTTCGTTCGCTACGAT : 443496 40 : eLeuMetSerAlaIleValPheGlnLeu : 48 |:!!:!:|||..!|||:!!|||:!!:!! eIleLeuSerCysIleIlePheGluVal 443497 : TATACTTTCGTGTATTATATTTGAGGTG : 443525 vulgar: CbirOr360 0 48 . KQ414815.1 443381 443525 + 102 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 443382 443525 102 + . gene_id 2 ; sequence CbirOr360 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 443382 443525 . + . KQ414815.1 exonerate:protein2genome:local exon 443382 443525 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 443382 443525 102 + . alignment_id 2 ; Query CbirOr360 ; Align 443382 1 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr380INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 123 -> 216 Target range: 457141 -> 457417 124 : AlaArgValThrIlePheThrIleCysGlyLeuPhePheAsnPheIleIleIleTyrS : 143 ::!! !:!!|||:!!! !||| !|||||| !.!. !!! ! !! :!: ! !! SerMetIleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuP 457142 : tcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCT : 457199 144 : erProPheIleLeuAspValValIleProLysAsnGluSerTyrAlaIlePheMetMe : 162 !|||.!.:!!||||||:!!|||:!!||| !||||||||| ! !! ! !:! heProIleLeuLeuAspIleValValProLeuAsnGluSerArgProCys---GluLe 457200 : TTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGT---GAGTT : 457253 163 : tGluIleValThrLysTyrPheValValSerGluLysTyrTyrPheLeuIleIleVal : 181 : ! :!!..!.!!:!!|||||||||! !! !:!!|||||| !! !||||||!.! uTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAla 457254 : ATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCG : 457310 182 : HisMetAsnAlaThrPheSerValGlyLeuIleValLeuThrGlyThrGlyThrMetM : 201 |||!!:! !.!! !.!. !:!!!.! !! !..!||||||!.!!.!! !:!!:!:: HisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuL 457311 : CACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTAC : 457370 202 : etIleSerTyrPheLysTyrAlaCysGlyMetPheGluIleThrArg : 216 !:|||!!! !! ! !:!!!.!||||||:!!|||:!!:!!|||||| euIleThrAsnValLeuHisValCysGlyLeuPheLysLeuThrArg 457371 : TTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTTACTAGG : 457417 vulgar: CbirOr380INT 123 216 . KQ414815.1 457141 457417 + 129 M 36 108 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457142 457417 129 + . gene_id 1 ; sequence CbirOr380INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457142 457417 . + . KQ414815.1 exonerate:protein2genome:local exon 457142 457417 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457142 457417 129 + . alignment_id 1 ; Query CbirOr380INT ; Align 457142 124 108 ; Align 457250 161 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr380INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 142 -> 218 Target range: 482022 -> 482247 143 : SerProPheIleLeuAspValValIleProLysAsnGluSerTyrAlaIlePheMetM : 162 ||| !|||:!!|||||||||:!!:!!||| !||||||!!! !! !.... SerSerPheValLeuAspValIleValProLeuAsnGluThr---ArgThrHisGlnP 482023 : TCGAGTTTCGTTCTAGACGTCATTGTTCCTCTAAACGAGACT---CGTACGCACCAAT : 482077 163 : etGluIleValThrLysTyrPheValValSerGluLysTyrTyrPheLeuIleIleVa : 181 !. !:!! !! !:!!||||||:!!! !..!:!!||||||! .!!!!!|||! ! heProValSerMetGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPh 482078 : TTCCAGTATCAATGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTT : 482134 182 : lHisMetAsnAlaThrPheSerValGlyLeuIleValLeuThrGlyThrGlyThrMet : 200 !|||..! !:!!||| !|||! ! !! :!!:!!..!|||! !! !|||:!! eHisGlnTrpPheSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeu 482135 : TCATCAGTGGTTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTG : 482191 201 : MetIleSerTyrPheLysTyrAlaCysGlyMetPheGluIleThrArgTyrAsn : 218 !!::!!! !!::.!!:!!:!!|||....!!:!!||| :!!..!|||!! ||| IleValMetTrpLeuGluHisAlaAlaSerLeuPheThrLeuValArg***Asn 482192 : ATTGTTATGTGGCTTGAACACGCTGCAAGCTTGTTCACCCTTGTAAGGTAAAAT : 482247 vulgar: CbirOr380INT 142 218 . KQ414815.1 482022 482247 + 104 M 14 42 G 1 0 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482023 482247 104 + . gene_id 2 ; sequence CbirOr380INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482023 482247 . + . KQ414815.1 exonerate:protein2genome:local exon 482023 482247 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 482023 482247 104 + . alignment_id 2 ; Query CbirOr380INT ; Align 482023 143 42 ; Align 482065 158 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr384 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 123 -> 214 Target range: 457141 -> 457411 124 : ThrIleIleIleIleLeuLeuValCysGlyLeuCysGlyAsnSerValIleIleTyrL : 143 ::!!!:|||! !:!!! ! ! !|||||| ! ! !! !!!!..!:!: ! !! SerMetIleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuP 457142 : tcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCT : 457199 144 : euProPheValLeuAspIleValValProLysAsnGluSerTyrAlaIleArgThrMe : 162 !!|||.!.:!!|||||||||||||||||| !||||||||| ! !! !..! :! heProIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGlu---Le 457200 : TTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAG---TT : 457253 163 : tGlnPheValThrGluTyrPheAsnValSerGluLysTyrTyrPheLeuValLeuVal : 181 : ! .!!..!.!!||||||||| !! !! !:!!|||||| !! !:!!:!!!.! uTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAla 457254 : ATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCG : 457310 182 : HisLeuThrAlaAlaSerValThrGlyAlaIleValPheThrGlyThrGlyThrMetL : 201 |||:!!! !.!!..! !:!!! !!.!|||! !..!!!.|||!.!!.!! !:!!:!:| HisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuL 457311 : CACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTAC : 457370 202 : euPheSerTyrLeuGlnHisValCysGlyMetPheGluIle : 214 ||.!.!!! !!:!!! !||||||||||||:!!|||:!!:!! euIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457371 : TTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr384 123 214 . KQ414815.1 457141 457411 + 121 M 37 111 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457142 457411 121 + . gene_id 1 ; sequence CbirOr384 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457142 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457142 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457142 457411 121 + . alignment_id 1 ; Query CbirOr384 ; Align 457142 124 111 ; Align 457253 162 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr384 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 121 -> 214 Target range: 485650 -> 485926 122 : ValThrThrIleIleIleIleLeuLeuValCysGlyLeuCysGlyAsnSerValIleI : 141 ..!!.!!:!|||||| !:!!:!!:!!! ! ..!||| !! ! ! !:!! !| ThrAsnSerIleIleAlaValIleIleGlyProSerLeuLeuValLeuIleLeuGlyI 485651 : ACGAACAGTATTATTGCAGTAATTATCGGTCCATCGTTACTTGTGCTGATTCTTGGTA : 485708 142 : leTyrLeuProPheValLeuAspIleValValProLysAsnGluSerTyrAlaIleAr : 160 ||!:! ! ! !:!!|||||||||:!!:!!||| !||| ! !!! ! !! || lePheAsnAsnSerIleLeuAspIleLeuIleProLeuAsnTyrThrArgPro---Ar 485709 : TATTTAACAACAGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCG---CG : 485762 161 : gThrMetGlnPheValThrGluTyrPheAsnValSerGluLysTyrTyrPheLeuVal : 179 ||||!!:! .!. !:!!|||:!!||| !! !..!:!!||||||!:!!:!! !:!! gThrIleProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIle 485763 : GACGATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATT : 485819 180 : LeuValHisLeuThrAlaAlaSerValThrGlyAlaIleValPheThrGlyThrGlyT : 199 !!.!|||:!!..! ! ! !:!!! !||||||||||||!!. !.!!||| AlaAlaHisValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluI 485820 : GCAGCACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaa : 485879 200 : hrMetLeuPheSerTyrLeuGlnHisValCysGlyMetPheGluIle : 214 ::::::...:!! :!!||||||..!||||||:!!!:! !||| leLeuIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIle 485880 : tattaattatggCGATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr384 121 214 . KQ414815.1 485650 485926 + 112 M 37 111 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485651 485926 112 + . gene_id 2 ; sequence CbirOr384 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485651 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485651 485926 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 485651 485926 112 + . alignment_id 2 ; Query CbirOr384 ; Align 485651 122 111 ; Align 485762 160 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr374PSE(S) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 334 -> 384 Target range: 441705 -> 441855 335 : TyrAsnValSerTrpTyrLeuAlaProLeuHisIleGlnLysLeuIleLeuPheLeuL : 354 |||||| !!!!||||||! !!.!|||||| ! |||||||||:!!||||||:!!: TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 355 : euGluArgSerAsnLysValPheSerLeuAsnValGlyGlyLeuPheThrAlaSerLe : 373 !! !!:!|||!..! !! !!.!:!!|||:!!..!|||:!!|||.!! !!!!!! etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 374 : uGluCysPheAlaThrIleTyrCysMetTyrLeu : 384 !:!! !!|||:!!:!!:!! !|||:!:! ||| rLysGlyPheSerSerValIleCysLeuLeuLeu 441821 : CAAAGGTTTTTCCTCGGTAATTTGTCTTTTGCTA : 441855 vulgar: CbirOr374PSE(S) 334 384 . KQ414815.1 441705 441855 + 107 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441855 107 + . gene_id 1 ; sequence CbirOr374PSE(S) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441706 441855 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441855 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441855 107 + . alignment_id 1 ; Query CbirOr374PSE(S) ; Align 441706 335 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr374PSE(S) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 334 -> 384 Target range: 445817 -> 445967 335 : TyrAsnValSerTrpTyrLeuAlaProLeuHisIleGlnLysLeuIleLeuPheLeuL : 354 |||||| !!!!||||||! !!.!|||||| ! |||||||||:!!||||||:!!: TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 355 : euGluArgSerAsnLysValPheSerLeuAsnValGlyGlyLeuPheThrAlaSerLe : 373 !! !!:!|||!..! !! !!.!:!!|||:!!..!|||:!!|||.!! !!!!!! etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 374 : uGluCysPheAlaThrIleTyrCysMetTyrLeu : 384 !:!! !!|||:!!:!!:!! !|||:!:! ||| rLysGlyPheSerSerValIleCysLeuLeuLeu 445933 : CAAAGGTTTTTCCTCGGTAATTTGTCTTTTGCTA : 445967 vulgar: CbirOr374PSE(S) 334 384 . KQ414815.1 445817 445967 + 107 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 445967 107 + . gene_id 2 ; sequence CbirOr374PSE(S) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445818 445967 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445967 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 445967 107 + . alignment_id 2 ; Query CbirOr374PSE(S) ; Align 445818 335 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr378 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 334 -> 384 Target range: 458543 -> 458693 335 : TyrAsnAlaProTrpTyrLeuAlaProLeuGlnIleGlnLysValIleLeuPheLeuL : 354 ||| !|||||||||! !|||||||||!:!||||||||| !:!!||||||:!!! TyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleS 458544 : TACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATAT : 458601 355 : euGlnArgSerAsnLysAlaPheThrLeuAsnIleGlyGlyIlePheThrLeuSerIl : 373 !:!!||||||!!.!:!!.! !:!!||| !!!: !|||!!:.!!! ! |||.. erGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPh 458602 : CAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatcctt : 458658 374 : eGluSerPheThrSerLeuValAsnAlaSerLeu : 384 .||| |||...:!!:!!..!!!.:!!!!!||| eGluPhePheAlaThrValThrLysSerTrpLeu 458659 : cgaatttttcgccaCGGTAACAAAATCTTGGCta : 458693 vulgar: CbirOr378 334 384 . KQ414815.1 458543 458693 + 100 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458544 458693 100 + . gene_id 1 ; sequence CbirOr378 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 458544 458693 . + . KQ414815.1 exonerate:protein2genome:local exon 458544 458693 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458544 458693 100 + . alignment_id 1 ; Query CbirOr378 ; Align 458544 335 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr387INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 162 -> 252 Target range: 478638 -> 479212 163 : ThrGluTyrPheValAspGlnGluLysTyrMetTyrPheIleLeuLeuHisLeuTyrS : 182 ||||||||||||:!!|||::::::||||||... ||||||::: |||:!!||| ThrGluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValTyrL 478639 : ACGGAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGTACC : 478696 183 : erAlaIleCysIleAlaValAlaThrLeuValGlyThrAlaIleLeuMetThrGlyTy : 201 !:!!:!: !!: !!.!.!!..!! !|||!.!|||! ! ! !:!!! ! !!: euSerLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMetTr 478697 : TGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTATGTG : 478753 202 : rPheIleHisPheCysGlyLeuPheAspIleAla{Se} >>>> Target Intron : 213 :.!.:!:||| ! !||||||!:!:!!||| !{||} 316 bp pMetValHisThrIleGlyLeuTyrAsnIleIle{Se}++ 478754 : GATGGTGCATACTATCGGCTTGTATAATATCATA{AG}gt.................. : 478793 214 : 1 >>>> {r}TyrArgLeuLysGlnAlaMetArgIleAsnSerTyrGluValThrA : 229 {|}||||||:!!:!!:!! !:!:||| ! !!::!!!.!! ++{r}TyrArgIleGlnLysIleValArg---------LysAspLeuAsnS 478794 : .......ag{T}TATCGAATTCAAAAAATCGTTCGT---------AAGGACTTGAACA : 479144 230 : snArgGlyAsnLysAsnLysIleTyrLysLysIleSerHisAlaValAspIleHisAr : 248 :!||| !|||! !||| ||| ! ||| :!:! !||||||:!!! !! !||||| erArgLeuAsnThrAsn---IleLysLysGlyValIleHisAlaIleAlaThrHisAr 479145 : GTCGTTTGAATACGAAC---ATTAAAAAAGGTGTGATACATGCCATAGCTACTCATAG : 479198 249 : gThrAlaIleGlu : 252 ||||||||||:!! gThrAlaIleGln 479199 : AACAGCAATACAG : 479212 vulgar: CbirOr387INT 162 252 . KQ414815.1 478638 479212 + 114 M 50 150 S 0 2 5 0 2 I 0 312 3 0 2 S 1 1 M 8 24 G 3 0 M 10 30 G 1 0 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478639 479212 114 + . gene_id 1 ; sequence CbirOr387INT ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 478639 478790 . + . KQ414815.1 exonerate:protein2genome:local exon 478639 478790 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 478791 478792 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 478791 479106 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 479105 479106 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 479107 479212 . + . KQ414815.1 exonerate:protein2genome:local exon 479107 479212 . + . insertions 0 ; deletions 4 KQ414815.1 exonerate:protein2genome:local similarity 478639 479212 114 + . alignment_id 1 ; Query CbirOr387INT ; Align 478639 163 150 ; Align 479108 214 24 ; Align 479132 225 30 ; Align 479162 236 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr387INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 160 -> 211 Target range: 485773 -> 485926 161 : IleMetThrGluTyrPheValAspGlnGluLysTyrMetTyrPheIleLeuLeuHisL : 180 |||! :!!|||:!!||||||||||||:!!||||||.!.||| !||| ! !|||: IleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisV 485774 : ATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATG : 485831 181 : euTyrSerAlaIleCysIleAlaValAlaThrLeuValGlyThrAlaIleLeuMetTh : 199 !! ! ! !:!! !|||!.!!.! !..!|||:!!.!!||| ||||||::: alValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMe 485832 : TTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattat : 485888 200 : rGlyTyrPheIleHisPheCysGlyLeuPheAspIle : 211 ..! .!. ||| !|||||||||!:! ||| tAlaIleIleGlnHisThrCysGlyLeuTyrThrIle 485889 : ggCGATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr387INT 160 211 . KQ414815.1 485773 485926 + 103 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485774 485926 103 + . gene_id 2 ; sequence CbirOr387INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485774 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485774 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485774 485926 103 + . alignment_id 2 ; Query CbirOr387INT ; Align 485774 161 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr385PSE(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 121 -> 216 Target range: 457129 -> 457411 122 : LysHisIleThrThrIleIleIleIleLeuAsnAlaCysCysLeuCysGlySerSerI : 141 ||| ::!!!:|||! !:!!! !!.! !||| !! ! ! !! !!!!! LysLysLysProSerMetIleThrValSerThrTyrCysGlyAlaLeuValIleThrT 457130 : aaaaaaaaaccttcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCA : 457187 142 : leMetValTyrTrpProPheIleLeuAspIleValValProLysAsnGluSerHisAl : 160 :!! ! !!::|||.!.:!!|||||||||||||||||| !|||||||||!.! ! hrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgPr 457188 : CGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCC : 457244 161 : aIleHisThrMetGlnPheValThrLysTyrPheLysValSerGluLysTyrTyrUnk : 179 ! !.!. :!: ! .!!..!.!!:!!|||||| ! !! !:!!|||||| oCysGlu---LeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHis 457245 : CTGTGAG---TTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCAT : 457298 180 : LeuValLeuValHisLeuAsnAlaAlaCysThrThrGlyLeuIleAlaPheThrGlyA : 199 ! !:!!:!!!.!|||:!!! !.!!..! !! !!.! !! !.!!!!.|||!.! TyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaA 457299 : TATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTA : 457358 200 : laGlyThrMetLeuLeuSerTyrLeuGlnHisIleCysGlyMetPheGluIle : 216 !! !:!!:!:|||:!!!!! !!:!!! !|||:!!||||||:!!|||:!!:!! snGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457359 : ACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr385PSE(F) 121 216 . KQ414815.1 457129 457411 + 105 M 41 123 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457130 457411 105 + . gene_id 1 ; sequence CbirOr385PSE(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457130 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457130 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457130 457411 105 + . alignment_id 1 ; Query CbirOr385PSE(F) ; Align 457130 122 123 ; Align 457253 164 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr385PSE(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 311 -> 378 Target range: 489892 -> 490326 312 : LeuIleLeuLeuPheLeuCysAsnTyrValGlyGlnGluValIleAspArgSerAsnH : 331 |||.!!! !:!!|||:!!|||||||||:!!||||||! ||| ::: |||::!. LeuPheTyrIlePheIleCysAsnTyrIleGlyGlnGlyValLysAsnCysSerSerG 489893 : TTGTTTTACATATTCATTTGCAATTATATTGGACAGGGagtaaaaaattgcagttcTG : 489950 332 : isIle<->TyrVal{Il} >>>> Target Intron 1 >>>> {e}ThrTyrAs : 338 !.:!! |||! !{||} 230 bp {|} ! !!!: luValPheTyrAsp{Il}++ ++{e}CysAsnSe 489951 : AGGTATTTTATGAC{AT}gt.........................ag{A}TGCAACAG : 490204 339 : nValAlaTrpTyrLeuAlaProLeuHisIleGlnLysLeuIleLeuPheLeuLeuGln : 357 !||| !|||||| !||||||:!! !||||||||||||:!:|||.!!:!!:!!||| rValAsnTrpTyrThrAlaProIleAlaIleGlnLysLeuLeuLeuIleIleMetGln 490205 : CGTGAATTGGTACACGGCTCCAATTGCCATACAAAAATTGCTGTTGATCATTATGCAA : 490261 358 : ArgSerAsnThrIlePheSerLeuSerValGlyGlyLeuPheThrAlaSerLeuGluC : 377 !.!!!!! !! !! !|||:!!!!!:!! !|||:!!!:!! !:!!|||!!!!!: AsnThrIleArgAsnSerSerIleThrLeuPheGlyMetTyrIleSerSerPheAspG 490262 : AATACTATACGAAATTCTTCAATAACACTCTTCGGAATGTATATATCGTCTTTCGATG : 490321 378 : ysPhe : 378 !!||| lyPhe 490322 : GTTTC : 490326 vulgar: CbirOr385PSE(F) 311 378 . KQ414815.1 489892 490326 + 103 M 21 63 G 0 3 M 2 6 S 0 2 5 0 2 I 0 226 3 0 2 S 1 1 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 489893 490326 103 + . gene_id 2 ; sequence CbirOr385PSE(F) ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 489893 489966 . + . KQ414815.1 exonerate:protein2genome:local exon 489893 489966 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 489967 489968 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 489967 490196 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 490195 490196 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 490197 490326 . + . KQ414815.1 exonerate:protein2genome:local exon 490197 490326 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 489893 490326 103 + . alignment_id 2 ; Query CbirOr385PSE(F) ; Align 489893 312 63 ; Align 489959 333 6 ; Align 490198 336 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr389PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 161 -> 257 Target range: 485764 -> 486528 162 : ThrValHisValMetArgGluTyrPheIleAspGlnGluLysTyrTyrTyrCysIleL : 181 |||:!!! !:!!! !|||:!!|||:!!||||||:!!||||||!:!||| !||| ThrIleProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleA 485765 : ACGATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTG : 485822 182 : euLeuHisPheAspValThrIlePheIleGlyGlyIleGlyCysMetAlaThrGlyTh : 200 ! !||| !!! !:!! !:!!.!!||||||!.!|||! !! :!:::!||| laAlaHisValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIl 485823 : CAGCACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaat : 485879 201 : rLeuLeuPheGlyCysIleLysTyrIleCysGlyIlePheArgIleAla{Se} >>> : 217 |||:::.....! |||:!!:!!! !||||||:!:!:!! !|||!.!{.!} eLeuIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIleVal{Gl}++ 485880 : attaattatggCGATAATACAGCACACCTGTGGTTTGTATACAATCGTT{GG}gt... : 485934 218 : > Target Intron 1 >>>> {r}TyrArgIleAspGlnAlaMetGlnThrAlaT : 228 476 bp {!}||||||||||||!!..!!.!. .!! !! ++{y}TyrArgIleAspHisThrPheValAlaAsnI 485935 : ......................ag{C}TATCGTATAGATCACACGTTTGTTGCAAACA : 486439 229 : hrLeuHisHisAlaValLeuSerAsnAsnPheIleLeuTyrLysLysIleValArgAl : 247 !! ! ! !:!! ! !..!!..!.. !!:!!:!!:!!!:!||||||||| ! leProGlyLeuSerProAlaGluArgArgValLeuIleHisArgLysIleValSerLe 486440 : TACCAGGACTTTCTCCTGCGGAAAGGAGAGTTCTAATTCACAGAAAAATAGTCTCGCT : 486496 248 : aIleAspIleHisArgLysAlaValLysLeu : 257 !:!::!!:!:|||!:!!:!!.! !:!!||| uValAsnLeuHisLysArgValLysGluLeu 486497 : CGTGAATTTGCACAAAAGAGTCAAGGAGTTA : 486528 vulgar: CbirOr389PSE 161 257 . KQ414815.1 485764 486528 + 150 M 55 165 S 0 2 5 0 2 I 0 472 3 0 2 S 1 1 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485765 486528 150 + . gene_id 1 ; sequence CbirOr389PSE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 485765 485931 . + . KQ414815.1 exonerate:protein2genome:local exon 485765 485931 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 485932 485933 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 485932 486407 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 486406 486407 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 486408 486528 . + . KQ414815.1 exonerate:protein2genome:local exon 486408 486528 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485765 486528 150 + . alignment_id 1 ; Query CbirOr389PSE ; Align 485765 162 165 ; Align 486409 218 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr366PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 82 -> 173 Target range: 457141 -> 457411 83 : ThrIleValIleThrIleLeuValCysGlyLeuPheAlaAsnSerValIleValTyrT : 102 ::!!!::!!! !..! ! ! !|||||| !.!.!.!! !!!!..!:!: ! !! SerMetIleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuP 457142 : tcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCT : 457199 103 : rpProTyrIleLeuAspAlaValMetProLysAsnGluSerTyrAlaIleHisThrMe : 121 ::||| :!!|||||| !|||:!:||| !||||||||| ! !! !.!. :! heProIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGlu---Le 457200 : TTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAG---TT : 457253 122 : tLysLeuValThrLysTyrPheGluValSerGluLysTyrTyrPheLeuValLeuVal : 140 : ! |||..!.!!:!!||||||! ! !! !:!!|||||| !! !:!!:!!!.! uTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAla 457254 : ATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCG : 457310 141 : HisLeuAsnAlaAlaCysThrAlaGlyLeuIleIleLeuThrGlyValGlyThrLeuL : 160 |||:!!! !.!!..! ! !!.! !! !! ||||||!.! !! !:!!|||| HisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuL 457311 : CACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTAC : 457370 161 : euIleSerTyrMetLysHisIleCysGlyMetPheGluIle : 173 |||||!!! !!:!: !|||:!!||||||:!!|||:!!:!! euIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457371 : TTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr366PI 82 173 . KQ414815.1 457141 457411 + 112 M 37 111 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457142 457411 112 + . gene_id 1 ; sequence CbirOr366PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457142 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457142 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457142 457411 112 + . alignment_id 1 ; Query CbirOr366PI ; Align 457142 83 111 ; Align 457253 121 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr366PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 289 -> 346 Target range: 458534 -> 458705 290 : IleIleThrTyrAsnAlaSerTrpTyrLeuAlaProIleArgIleGlnLysLeuIleL : 309 ||| !! !||| ! !!||||||! !||||||:!!||||||||||||! !:!!| IleArgArgTyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuL 458535 : ATTCGTAGATACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCT : 458592 310 : euPheLeuLeuGlnArgSerAsnLysIlePheThrLeuSerValGlyGlyLeuPheTh : 328 |||||:!!! !:!!||||||!!.!:!:!: !:!!|||!!!:!! !|||:!!.!!! euPheIleSerGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIl 458593 : TGTTCATATCAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCAT : 458649 329 : rAlaSerLeuGluCysPheThrThrLeuValSerAlaSerValSerTyrPheThr : 346 !||||||...||| |||...|||:!!..!!.!:!!!!!::: :::|||::: eAlaSerPheGluPhePheAlaThrValThrLysSerTrpLeu***HisPheSer 458650 : TGCatccttcgaatttttcgccaCGGTAACAAAATCTTGGCtatgacatttttct : 458705 vulgar: CbirOr366PI 289 346 . KQ414815.1 458534 458705 + 111 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458535 458705 111 + . gene_id 2 ; sequence CbirOr366PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 458535 458705 . + . KQ414815.1 exonerate:protein2genome:local exon 458535 458705 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458535 458705 111 + . alignment_id 2 ; Query CbirOr366PI ; Align 458535 290 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr373PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 271 -> 338 Target range: 489892 -> 490326 272 : ValTrpIleMetPheIleCysAsnTyrAlaGlyGlnGluIleThrAspHisSerAsnH : 291 :!!!:: !!!:||||||||||||||| !||||||! ::: ::: |||::!. LeuPheTyrIlePheIleCysAsnTyrIleGlyGlnGlyValLysAsnCysSerSerG 489893 : TTGTTTTACATATTCATTTGCAATTATATTGGACAGGGagtaaaaaattgcagttcTG : 489950 292 : isVal<->TyrVal{Il} >>>> Target Intron 1 >>>> {e}ThrTyrSe : 298 !.||| |||! !{||} 230 bp {|} ! !!|| luValPheTyrAsp{Il}++ ++{e}CysAsnSe 489951 : AGGTATTTTATGAC{AT}gt.........................ag{A}TGCAACAG : 490204 299 : rIleSerTrpTyrLeuAlaProLeuHisIleGlnLysLeuValLeuPheLeuLeuGln : 317 |:!:!:!|||||| !||||||:!! !||||||||||||:!!|||.!!:!!:!!||| rValAsnTrpTyrThrAlaProIleAlaIleGlnLysLeuLeuLeuIleIleMetGln 490205 : CGTGAATTGGTACACGGCTCCAATTGCCATACAAAAATTGCTGTTGATCATTATGCAA : 490261 318 : ArgAsnHisLysIlePheThrMetSerValAlaGlyLeuPheThrAlaSerLeuGluC : 337 !.!!.! ::!! !! !:!!!!:!!!:!! !|||:!!!:!! !:!!|||!!!!!: AsnThrIleArgAsnSerSerIleThrLeuPheGlyMetTyrIleSerSerPheAspG 490262 : AATACTATACGAAATTCTTCAATAACACTCTTCGGAATGTATATATCGTCTTTCGATG : 490321 338 : ysPhe : 338 !!||| lyPhe 490322 : GTTTC : 490326 vulgar: CbirOr373PI 271 338 . KQ414815.1 489892 490326 + 103 M 21 63 G 0 3 M 2 6 S 0 2 5 0 2 I 0 226 3 0 2 S 1 1 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 489893 490326 103 + . gene_id 1 ; sequence CbirOr373PI ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 489893 489966 . + . KQ414815.1 exonerate:protein2genome:local exon 489893 489966 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 489967 489968 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 489967 490196 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 490195 490196 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 490197 490326 . + . KQ414815.1 exonerate:protein2genome:local exon 490197 490326 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 489893 490326 103 + . alignment_id 1 ; Query CbirOr373PI ; Align 489893 272 63 ; Align 489959 293 6 ; Align 490198 296 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr367 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 335 -> 389 Target range: 458543 -> 458705 336 : TyrAsnIleSerTrpTyrLeuAlaProIleArgIleGlnLysLeuIleLeuPheLeuL : 355 ||| ||| !!||||||! !||||||:!!||||||||||||! !:!!||||||:!!! TyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleS 458544 : TACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATAT : 458601 356 : euGlnArgSerAsnLysIlePheThrLeuSerIleGlyGlyLeuPheThrIleSerLe : 374 !:!!||||||!!.!:!:!: !:!!|||!!!!!: !|||:!!.!!! ! |||.. erGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPh 458602 : CAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatcctt : 458658 375 : uGluCysPheAlaThrLeuValSerAlaSerMetSerTyrPheThr : 389 .||| |||||||||:!!..!!.!:!!!!!::: :::|||::: eGluPhePheAlaThrValThrLysSerTrpLeu***HisPheSer 458659 : cgaatttttcgccaCGGTAACAAAATCTTGGCtatgacatttttct : 458705 vulgar: CbirOr367 335 389 . KQ414815.1 458543 458705 + 116 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458544 458705 116 + . gene_id 1 ; sequence CbirOr367 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 458544 458705 . + . KQ414815.1 exonerate:protein2genome:local exon 458544 458705 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458544 458705 116 + . alignment_id 1 ; Query CbirOr367 ; Align 458544 336 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr364PNC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 103 -> 169 Target range: 485728 -> 485926 104 : AspIleIleAlaProIleAsnGlyCysArgSerHisArgLeuCysIleAlaAlaAspT : 123 ||||||:!: !|||:!:||| ! !||| !!!..! !:!! !||| !:!!!!:: AspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnSerGluH 485729 : GACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACTCGGAAC : 485786 124 : yrPheThrAspGlnGlnTyrTyrTyrTyrThrIleValLeuCysMetThrAlaAlaVa : 142 !!|||..!||||||||| ! |||!:!||| !!|||!.! ! !:!:..! ! !|| isPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLeuPheVa 485787 : ATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCTCTTCGT : 485843 143 : lSerIleGlyValLeuThrIleIleAlaThrGlyThrLeuMetIleValTyrLeuGln : 161 |! !||||||!.!:!!..!:!!:!!::!||| |||::::::..! :!!||| lIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIleIleGln 485844 : CATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATAATACAG : 485900 162 : HisThrCysGlyMetPheArgIle : 169 ||||||||||||:!!!:!! !||| HisThrCysGlyLeuTyrThrIle 485901 : CACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr364PNC 103 169 . KQ414815.1 485728 485926 + 134 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485729 485926 134 + . gene_id 1 ; sequence CbirOr364PNC ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485729 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485729 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485729 485926 134 + . alignment_id 1 ; Query CbirOr364PNC ; Align 485729 104 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr364PNC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 100 -> 169 Target range: 464630 -> 464840 101 : AspThrTyrAspIleIleAlaProIleAsnGlyCysArgSerHisArgLeuCysIleA : 120 |||! ! !|||:!::!!||||||:!!|||! !! !|||||||||!:!! !! |||. AspIleLeuAspValValAlaProLeuAsnGluSerArgSerHisGlnTyrLeuIleT 464631 : GATATTCTCGACGTGGTTGCGCCCCTCAATGAATCTCGTTCTCATCAATACTTAATTA : 464688 121 : laAlaAspTyrPhe<->ThrAspGlnGlnTyrTyrTyrTyrThrIleValLeuCysMe : 138 !!|||!!:!:!||| ||||||.....! !!||| !..!! ! !:!! !!! hrAlaGluPhePheIleThrAspSerSerProAsnTyrIleValThrCysValGlyTh 464689 : CCGCGGAATTTTTCATCACTGATAGTTCGCCGAATTATATCGTAACTTGTGTTGGTAC : 464745 139 : tThrAlaAlaValSerIleGlyValLeuThrIleIleAlaThrGlyThrLeuMetIle : 157 ! ! !.!!:!!! !!!:|||||| !||||||||||||:!!! !|||!!!! .!! rAspIleThrLeuIleMetGlyValThrThrIleIleAlaSerGluThrPheThrPhe 464746 : GGATATTACTCTTATCATGGGAGTCACGACAATAATTGCCTCCGAAACGTTCACTTTT : 464802 158 : ValTyrLeuGlnHisThrCysGlyMetPheArgIle : 169 :!!! |||||||||! !|||!.!||||||!:!||| LeuLeuLeuGlnHisIleCysAlaMetPheLysIle 464803 : TTGTTGCTGCAACATATCTGCGCAATGTTCAAAATC : 464840 vulgar: CbirOr364PNC 100 169 . KQ414815.1 464630 464840 + 125 M 24 72 G 0 3 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464631 464840 125 + . gene_id 2 ; sequence CbirOr364PNC ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464631 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464631 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464631 464840 125 + . alignment_id 2 ; Query CbirOr364PNC ; Align 464631 101 72 ; Align 464706 125 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr387INT Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 157 -> 211 Target range: 130328 -> 130166 158 : LysMetLeuIleMetThrGluTyrPheValAspGlnGluLysTyrMetTyrPheIleL : 177 |||:!:|||:!! |||||||||||||||||| ! :!! ! |||!!:|||.!.||| LysLeuLeuValArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleT 130328 : AAATTACTCGTTCGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCA : 130271 178 : euLeuHisLeuTyrSerAlaIleCysIleAlaValAlaThrLeuValGlyThrAlaIl : 196 !:!!||| ! !! !|||||| !::!|||.!!! !! !:!!.!!!:!! !|| hrIleHisAlaThrIleAlaIleMetCysSerValThrMetGlnIleSerSerAspIl 130270 : CGATCCACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAt : 130214 197 : eLeuMetThrGlyTyrPheIleHisPheCysGlyLeuPheAspIle : 211 |||| ... :::...!!:|||.!! !!|||:!!|||!!::!! eLeuAsnAsnIlePheMetMetHisIleSerGlyMetPheGluVal 130213 : tttgaataacatatttatGATGCACATCAGTGGAATGTTCGAGGTA : 130167 vulgar: CbirOr387INT 157 211 . KQ414817.1 130328 130166 - 110 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130167 130328 110 - . gene_id 1 ; sequence CbirOr387INT ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130167 130328 . - . KQ414817.1 exonerate:protein2genome:local exon 130167 130328 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 130167 130328 110 - . alignment_id 1 ; Query CbirOr387INT ; Align 130329 158 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr380INT Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 215 -> 256 Target range: 134863 -> 134740 216 : ArgTyrAsnValSerTrpTyrLeuAlaProValAspIleGlnLysMetIleLeuPheL : 235 |||||||||!.! !|||||| !.!!|||!.!..!! !||||||:!:|||! !.!.: ArgTyrAsnAlaHisTrpTyrAspThrProAlaSerThrGlnLysValIleGlnIleM 134863 : AGATACAATGCACATTGGTACGACACGCCAGCAAGTACTCAGAAGGTTATCCAGATAA : 134806 236 : euLeuGlnArgGlySerArgThrPheThrLeuAsnValGlyGlyLeuPheThrAlaSe : 254 !!||||||!:! !|||..! !!||| !!!!...:!!..!|||||||||:!!||||| etLeuGlnLysIleSerGluProPheTyrPheGlyIleSerGlyLeuPheSerAlaSe 134805 : TGTTGCAAAAAATATCCGAGCCCTTTTACTTTGGAATTTCAGGATTATTTTCTGCATC : 134749 255 : rPheGlu : 256 ||||||| rPheGlu 134748 : GTTCGAA : 134741 vulgar: CbirOr380INT 215 256 . KQ414817.1 134863 134740 - 105 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 134741 134863 105 - . gene_id 1 ; sequence CbirOr380INT ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 134741 134863 . - . KQ414817.1 exonerate:protein2genome:local exon 134741 134863 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 134741 134863 105 - . alignment_id 1 ; Query CbirOr380INT ; Align 134864 216 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr371PSE(F) Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 141 -> 213 Target range: 1243821 -> 1243605 142 : IleIleIleProTyrLeuAspGlyIleThrProIleAsnGlyCysArgProHisGl : 160 :!!||| ||| ||||||! !:!!:!!|||:!!|||! ! !||| !!!.. LeuIleProProIleLeuAspValValSerProLeuAsnGluThrArgSerArgIl 1243821 : TTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGAT : 1243767 161 : nLeuTyrIleValAlaGluTyrPheIleAspGlnGlnLysTyrTyrTyrValIleL : 179 ! ||| :::|||.!..!!|||...:::||| :::||| ::: eGluValIleLysLeuGlnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuT 1243766 : AGaagtaataaaattgcaataccTGTTCGACAtggagaagaatttttattcattat : 1243710 180 : euLeuHisMetAsnAlaAlaLeuPheIleGlyIleLeuThrLeuIleAlaMetGly : 197 :!!:!!! ..! !..!! !|||!!: !!!::!!..!:!!|||.!!!!:! ! yrValTyrThrGlyTrpCysSerPheMetThrMetMetValIleIleThrIleAsp 1243709 : acGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGAC : 1243656 198 : ThrLeuLeuIleAlaTyrLeuGlnHisThrCysGlyMetPheLysIle : 213 .!!|||! !:!:!.! !:!!!!.||||||||||||:!:||| :!! AlaLeuTyrValValIleIleHisHisThrCysGlyLeuPheAlaVal 1243655 : GCGTTATATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCTGTT : 1243606 vulgar: CbirOr371PSE(F) 141 213 . KQ414851.1 1243821 1243605 - 115 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243821 115 - . gene_id 1 ; sequence CbirOr371PSE(F) ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243821 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243821 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243821 115 - . alignment_id 1 ; Query CbirOr371PSE(F) ; Align 1243822 142 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr370 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 133 -> 213 Target range: 1243845 -> 1243605 134 : SerProLeuPheTrpThrIleGluMetLeuMetProTyrCysAspIleValIlePr : 152 ||| !:!!||| !.!! !:!::!! !||| ! |||:!!||| !|| SerIleIlePheValLeuPheProLeuIleProProIleLeuAspValValSerPr 1243845 : TCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACC : 1243791 153 : oIleAsnGlyCysArgProGlnArgLeuSerIleAlaPheGluTyrCysIleHisG : 171 |:!!|||! ! !||| !!!:!! ! ||| ...:::||| .!! !!. oLeuAsnGluThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspM 1243790 : GCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACA : 1243734 172 : lnGlnLysTyrTyrTyrValLeuLeuLeuHisMetAsnAlaAlaArgAlaIleGly : 189 ..:::||| :::||| ||| :!!:!!! ..! !..! ! !!!: ! etGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThr 1243733 : tggagaagaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACC : 1243680 190 : IleLeuThrPheIleAlaThrGlyThrLeuMetIleAlaTyrLeuGlnHisThrCy : 208 !!::!!..!.!.|||.!!! !! !.!!||| :!:!.! !:!!!!.|||||||| MetMetValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCy 1243679 : ATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTG : 1243623 209 : sGlyMetPheArgIle : 213 ||||:!:||| !:!! sGlyLeuPheAlaVal 1243622 : TGGCTTATTCGCTGTT : 1243606 vulgar: CbirOr370 133 213 . KQ414851.1 1243845 1243605 - 102 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243845 102 - . gene_id 1 ; sequence CbirOr370 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243845 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243845 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243845 102 - . alignment_id 1 ; Query CbirOr370 ; Align 1243846 134 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr363 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 123 -> 213 Target range: 1243875 -> 1243605 124 : AlaAlaLeuLeuValValPhePheIleLeuGluSerIlePheTrpAlaSerGlnIl : 142 !.!:!!|||! !! !..!!!.||| !!!!..!! !|||||| !! !! !:! ValSerLeuSerGlyThrLeuPheTyrPheSerIleIlePheValLeuPheProLe 1243875 : GTCTCTCTTTCAGGTACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATT : 1243821 143 : eIleIleProTyrLeuAspAspValThrProIleAsnGlyCysArgProHisArgL : 161 !||| ||| ||||||! !|||:!!|||:!!|||! ! !||| !!!..! ! uIleProProIleLeuAspValValSerProLeuAsnGluThrArgSerArgIleG 1243820 : AATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAG : 1243764 162 : euGlnIleAlaValGluTyrPheIleAspGlnGlnLysTyrTyrTyrValIleLeu : 179 ||| ::::::|||.!..!!|||...:::||| :::||| ::: luValIleLysLeuGlnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuTyr 1243763 : aagtaataaaattgcaataccTGTTCGACAtggagaagaatttttattcattatac : 1243710 180 : LeuHisMetAsnAlaAlaIlePheIleGlyValLeuThrPheLeuAlaMetGlyTh : 198 :!!:!!! ..! !..! |||!!: !:!!:!!..!.!.:!!.!!!!:! !.! ValTyrThrGlyTrpCysSerPheMetThrMetMetValIleIleThrIleAspAl 1243709 : GTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGC : 1243653 199 : rLeuMetIleAlaTyrLeuGlnHisThrCysGlyMetPheThrIle : 213 !||| :!:!.! !:!!!!.||||||||||||:!:|||.!!:!! aLeuTyrValValIleIleHisHisThrCysGlyLeuPheAlaVal 1243652 : GTTATATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCTGTT : 1243606 vulgar: CbirOr363 123 213 . KQ414851.1 1243875 1243605 - 121 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243875 121 - . gene_id 1 ; sequence CbirOr363 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243875 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243875 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243875 121 - . alignment_id 1 ; Query CbirOr363 ; Align 1243876 124 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr363 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 140 -> 213 Target range: 32524 -> 32743 141 : GlnIleIleIleProTyrLeuAspAspValThrProIleAsnGlyCysArgProHisArg : 160 |||.!!:!: ! !:!!|||! :!!.!!|||:!!|||! !! !|||! !||| ! GlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHisVal 32525 : CAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTA : 32582 161 : LeuGlnIleAlaValGluTyrPheIleAspGlnGlnLysTyrTyrTyrValIleLeuLeu : 180 |||! ! !|||! !|||||||||:!!|||||||||||||||::: !||| !||| LeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeu 32583 : CTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTG : 32642 181 : HisMetAsnAlaAlaIlePheIleGlyValLeuThrPheLeuAlaMetGlyThrLeuMet : 200 |||||| !!.!.!!:!! !:!!|||:!! !..! ! !|||::: ::::::... HisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePhe 32643 : CACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttc : 32702 201 : IleAlaTyrLeuGlnHisThrCysGlyMetPheThrIle : 213 ||| :::::! |||..!|||!.!! |||!.!||| IlePhePheMetPheHisValCysAlaLysPheAsnIle 32703 : atattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr363 140 213 . KQ415081.1 32524 32743 + 140 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32525 32743 140 + . gene_id 1 ; sequence CbirOr363 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32525 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32525 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32525 32743 140 + . alignment_id 1 ; Query CbirOr363 ; Align 32525 141 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr387INT Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 158 -> 210 Target range: 11343 -> 11499 159 : MetLeuIleMetThrGluTyrPheValAspGlnGluLysTyrMetTyrPheIleLeuLeu : 178 :!!:!!:!!:!:|||||||||||||||||| ! |||:!!|||!!:||| ||| ! ! LeuIleValLeuThrGluTyrPheValAspTyrGluGlnTyrIleTyrProIleThrThr 11344 : TTGATAGTTTTAACCGAATACTTCGTTGATTACGAGCAATACATTTATCCAATTACGACC : 11401 179 : HisLeuTyrSerAlaIleCysIleAlaValAlaThrLeuValGlyThrAlaIleLeuMet : 198 |||:!! ! !!.!|||! !!!:!.! !!|||! !! !:!!|||!:!! !:!!|||! HisValValValGlyIlePheMetGlyPheAlaIleGlnIleGlySerAspLeuLeuAsn 11402 : CACGTGGTTGTAGGAATTTTTATGGGTTTTGCTATTCAAATTGGCAGCGATCTTTTGAAT : 11461 199 : ThrGlyTyrPheIleHisPheCysGlyLeuPheAsp : 210 ! ! !!:!.!.!!:||| !! !!|||:!!|||||| MetIlePheMetMetHisValSerGlyMetPheAsp 11462 : ATGATATTTATGATGCACGTCAGTGGAATGTTCGAC : 11499 vulgar: CbirOr387INT 158 210 . KQ415081.1 11343 11499 + 106 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 11344 11499 106 + . gene_id 1 ; sequence CbirOr387INT ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 11344 11499 . + . KQ415081.1 exonerate:protein2genome:local exon 11344 11499 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 11344 11499 106 + . alignment_id 1 ; Query CbirOr387INT ; Align 11344 159 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr360 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 135 -> 210 Target range: 11271 -> 11496 136 : PheValValIleHisPheTrpSerAspValLeuAspValIlePheGlnIleAsnIleSer : 155 .!!||| !!:!:||| |||.!...! !:!!..!||| ... !||| !!! IleValPheLeuHisThrLeuSerGlnThrThrAsnThrIleThrSerArgAsnGluThr 11272 : ATCGTCTTCTTGCATACGCTTTCGCAAACTACCAATACGATCACATCTCGAAACGAGACC : 11329 156 : ArgSerHisAsnLeuProIleIleThrGluTyrPheIleAsnGlnGluLysTyrTyrTyr : 175 |||:!!:!!..!||| !:!!:!!||||||||||||:!!:!! ! |||:!!||| !||| ArgAlaAsnGlyLeuIleValLeuThrGluTyrPheValAspTyrGluGlnTyrIleTyr 11330 : AGAGCTAATGGCTTGATAGTTTTAACCGAATACTTCGTTGATTACGAGCAATACATTTAT : 11389 176 : LeuIleLeuMetHisLeuAlaIleAlaValTyrIleGlyIleIleValThrLeuAlaVal : 195 ! !||| !! |||:!!!.!:!!!.!:!!!:!!!:|||.!! !:!! !:!!!.! ! ProIleThrThrHisValValValGlyIlePheMetGlyPheAlaIleGlnIleGlySer 11390 : CCAATTACGACCCACGTGGTTGTAGGAATTTTTATGGGTTTTGCTATTCAAATTGGCAGC : 11449 196 : GlyThrMetLeuIleAlaPheTyrHisAsnThrCysGlyValPhe : 210 ! ! !:!! !!!: !||| :!!..! !!|||:!!||| AspLeuLeuAsnMetIlePheMetMetHisValSerGlyMetPhe 11450 : GATCTTTTGAATATGATATTTATGATGCACGTCAGTGGAATGTTC : 11496 vulgar: CbirOr360 135 210 . KQ415081.1 11271 11496 + 112 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 11272 11496 112 + . gene_id 1 ; sequence CbirOr360 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 11272 11496 . + . KQ415081.1 exonerate:protein2genome:local exon 11272 11496 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 11272 11496 112 + . alignment_id 1 ; Query CbirOr360 ; Align 11272 136 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr371PSE(F) Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 128 -> 213 Target range: 32488 -> 32743 129 : PhePheValIleAlaLysSerAlaPheTrpAlaSerGlnIleIleIleProTyrLeuAsp : 148 ||| ! !|||!.!! !! !:!!!:! ! !|||.!!:!: ! !:!!||| PheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAsp 32489 : TTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGAC : 32546 149 : GlyIleThrProIleAsnGlyCysArgProHisGlnLeuTyrIleValAlaGluTyrPhe : 168 ! !|||.!!|||:!!|||! !! !|||! !||| !||| !!.!!.!||||||||| ValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPhe 32547 : GTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTC : 32606 169 : IleAspGlnGlnLysTyrTyrTyrValIleLeuLeuHisMetAsnAlaAlaLeuPheIle : 188 :!!|||||||||||||||::: !||| !||||||||| !!.!.!!:!! !:!! ValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeu 32607 : GTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTT : 32666 189 : GlyIleLeuThrLeuIleAlaMetGlyThrLeuLeuIleAlaTyrLeuGlnHisThrCys : 208 |||:!: !..! !! |||::: ::::::...||| :::::! |||..!||| GlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCys 32667 : GGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGC : 32726 209 : GlyMetPheLysIle : 213 !.!! |||!!.||| AlaLysPheAsnIle 32727 : GCCAAATTCAATATT : 32743 vulgar: CbirOr371PSE(F) 128 213 . KQ415081.1 32488 32743 + 140 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32489 32743 140 + . gene_id 1 ; sequence CbirOr371PSE(F) ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32489 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32489 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32489 32743 140 + . alignment_id 1 ; Query CbirOr371PSE(F) ; Align 32489 129 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr373PI Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 99 -> 176 Target range: 32515 -> 32743 100 : SerValIleIleTyrTrpProTyrIleLeuAspIleIleValProLysAsnValSerTyr : 119 :!!:!!:!: !!:! !|||||||||:!!|||:!:|||!.!||| !|||! !||| AlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSer--- 32516 : GCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCC--- : 32573 120 : AlaIleArgAlaMetTyrPheMetThrLysTyrPheLysValSerGluLysTyrTyrPhe : 139 ! !!.!!.!:!! !:! !:!!|||||| ! !...:::||||||:::... ArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeu 32574 : CGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttccta : 32630 140 : LeuValLeuValHisLeuAsnAlaAlaCysThrThrGlyLeuIleValMetIleAlaMet : 159 !:!! !:!!|||:!! !!.!.!! !||| !||||||! ||| ! |||::: ProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaVal 32631 : ccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtc : 32690 160 : GlyThrMetLeuLeuSerTyrThrGlnHisIleCysGlyMetPheGluIle : 176 ::::::...::: ::: ! |||:!!|||!.!! |||.!.||| AspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32691 : gattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr373PI 99 176 . KQ415081.1 32515 32743 + 109 M 19 57 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32516 32743 109 + . gene_id 1 ; sequence CbirOr373PI ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32516 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32516 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32516 32743 109 + . alignment_id 1 ; Query CbirOr373PI ; Align 32516 100 57 ; Align 32573 120 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr366PI Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 251 -> 337 Target range: 36492 -> 38631 252 : GluGluValGluGluValIleLeuHisLeuPheSerValLeuIleLeuLeuValValMet : 271 ..!:!!:!!||||||:!!|||||| ! ! ! !|||:!! !! !|||:!!:!!!!: SerLysLeuGluGluIleIleLeuGlyGlyValHisValValGlyTyrLeuLeuLeuIle 36493 : TCGAAACTTGAAGAAATAATACTCGGCGGGGTGCACGTGGTTGGTTACCTGCTTCTGATA : 36550 272 : PheIleThrAsnTyrIleGlyGlnGlnValThrAspTyrSerAsnHisIleTyrIleIle : 291 |||!!:!.!!.!!:! !|||:!!:!! !||| !!|||::: !!|||! ! ! PheMetAsnThrPheProMetGlnLysLeuLeuAspAsnSerSerAspIleLeuTyrArg 36551 : TTTATGAACACCTTTCCGATGCAGAAATTGTTGGATAACAGCTCGGATATCTTGTATCGA : 36610 292 : {Th} >>>> Target Intron 1 >>>> {r}TyrAsnAlaSerTrpTyrLeuAla : 300 {! } 1881 bp {!}!:! !!:!! !!|||||| !||| {Me}++ ++{t}PheTyrSerArgTrpTyrAspAla 36611 : {AT}gt.........................ag{G}TTTTATTCACGATGGTACGACGCG : 38518 301 : ProIleArgIleGlnLysLeuIleLeuPheLeuLeuGlnArgSerAsnLysIlePheThr : 320 |||:!!!:!||||||||||||:!!|||.!!:!!:!!.!.|||||| !:!! ! ! ! ProLeuLysIleGlnLysLeuValLeuIleIleMetAsnArgSerPheGluProValGly 38519 : CCTCTAAAAATACAGAAACTAGTACTGATCATAATGAACAGAAGCTTCGAACCAGTAGGC : 38578 321 : LeuSerValGlyGlyLeuPheThrAlaSerLeuGluCysPheThrThrLeu : 337 ||| !!:!!|||! !! ! ...::::::||| |||:::::!:!! LeuArgIleGlyAspTyrGlnAspValThrIleGluAsnPheSerSerVal 38579 : CTCCGTATTGGCGATTACCAGGAcgtaacaattgaaaatttctcatcCGTA : 38631 vulgar: CbirOr366PI 251 337 . KQ415081.1 36492 38631 + 101 M 40 120 S 0 2 5 0 2 I 0 1877 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 36493 38631 101 + . gene_id 1 ; sequence CbirOr366PI ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 36493 36614 . + . KQ415081.1 exonerate:protein2genome:local exon 36493 36614 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 36615 36616 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 36615 38495 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 38494 38495 . + . intron_id 0 ; splice_site "AG" KQ415081.1 exonerate:protein2genome:local cds 38496 38631 . + . KQ415081.1 exonerate:protein2genome:local exon 38496 38631 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 36493 38631 101 + . alignment_id 1 ; Query CbirOr366PI ; Align 36493 252 120 ; Align 38497 293 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr375 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 133 -> 214 Target range: 32503 -> 32743 134 : LeuPheGlyAsnSerValIleValTyrTrpProTyrIleLeuAspIleIleIleProArg : 153 :!!|||..! !!:!!:!!:!: !!:! !|||||||||:!!|||:!:||| |||! ! IlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeu 32504 : ATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTA : 32561 154 : AsnGluSerTyrAlaIleHisMetMetGlnPheValThrThrTyrPheAsnValSerGlu : 173 ||||||||| ! !|||:!::!!! !!:!!.! ! !|||||| !! !...::: AsnGluSer---ArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGln 32562 : AACGAATCC---CGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaa : 32618 174 : LysTyrTyrPheLeuIleValValHisLeuAsnAlaAlaSerThrIleGlyLeuIleVal : 193 ||||||:::... !|||!.!:!!|||:!! !!.!.!! !|||:!!||||||! ||| LysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrVal 32619 : aaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTC : 32678 194 : CysValGlyThrGlyThrMetLeuPheSerTyrLeuGlnHisIleCysGlyMetPheGlu : 213 ..!..!!.!... ::::::...... :::::! |||:!!|||!.!! |||.!. AlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsn 32679 : GCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAAT : 32738 214 : Ile : 214 ||| Ile 32739 : ATT : 32743 vulgar: CbirOr375 133 214 . KQ415081.1 32503 32743 + 133 M 23 69 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32504 32743 133 + . gene_id 1 ; sequence CbirOr375 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32504 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32504 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32504 32743 133 + . alignment_id 1 ; Query CbirOr375 ; Align 32504 134 69 ; Align 32573 158 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr364PNC Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 103 -> 169 Target range: 32545 -> 32743 104 : AspIleIleAlaProIleAsnGlyCysArgSerHisArgLeuCysIleAlaAlaAspTyr : 123 |||:!:|||||||||:!!|||! !! !||| !||| !||| !|||!.!!!:||| AspValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyr 32546 : GACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATAT : 32603 124 : PheThrAspGlnGlnTyrTyrTyrTyrThrIleValLeuCysMetThrAlaAlaValSer : 143 |||..!||||||||| |||::: !|||!.!||| !||| !!.!.!!|||!!! PheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThr 32604 : TTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACC : 32663 144 : IleGlyValLeuThrIleIleAlaThrGlyThrLeuMetIleValTyrLeuGlnHisThr : 163 :!!|||:!! !..! !! |||... ::::::...||| :::::! |||..! LeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisVal 32664 : CTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTT : 32723 164 : CysGlyMetPheArgIle : 169 |||!.!! |||!.!||| CysAlaLysPheAsnIle 32724 : TGCGCCAAATTCAATATT : 32743 vulgar: CbirOr364PNC 103 169 . KQ415081.1 32545 32743 + 136 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32546 32743 136 + . gene_id 1 ; sequence CbirOr364PNC ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32546 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32546 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32546 32743 136 + . alignment_id 1 ; Query CbirOr364PNC ; Align 32546 104 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr363 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 166 -> 214 Target range: 11588 -> 11732 167 : TyrPheIleAspGlnGlnLysTyrTyrTyrValIleLeuLeuHisMetAsnAlaAlaIle : 186 ||||||:!!|||:!! !:!!||||||||| !|||:!!|||||| !....!.!!:!! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrVal 11589 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTT : 11646 187 : PheIleGlyValLeuThrPheLeuAlaMetGlyThrLeuMetIleAlaTyrLeuGlnHis : 206 !!.|||! !|||:!!..!!:!! !||| ! !||| ! !!:!.! :!!|||||| LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 11647 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 11706 207 : ThrCysGlyMetPheThrIleAla : 214 |||||||||:!!|||.!!:!:||| ThrCysGlyLeuPheAlaValAla 11707 : ACTTGCGGACTGTTCGCCGTGGCC : 11732 vulgar: CbirOr363 166 214 . LHQN01025741.1 11588 11732 + 122 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11589 11732 122 + . gene_id 1 ; sequence CbirOr363 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11589 11732 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11589 11732 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11589 11732 122 + . alignment_id 1 ; Query CbirOr363 ; Align 11589 167 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr360 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 134 -> 213 Target range: 11495 -> 11732 135 : LeuPheValValIleHisPheTrpSerAspValLeuAspValIlePheGlnIleAsnIle : 154 ||||||:!! !:!:! !:: !!!! :!!:!!:!! ! ! ! |||||| LeuPheIleGlnValProTrpThrThrArgLeuValAsnSerTyrLysThrGlnAsnIle 11496 : TTGTTCATACAAGTGCCATGGACGACCCGATTGGTGAACTCGTACAAGACACAGAATATA : 11553 155 : SerArgSerHisAsnLeuProIleIleThrGluTyrPheIleAsnGlnGluLysTyrTyr : 174 !!!! !||| .!.!!! !||| ! ! ! ||||||:!!:!!:!!! !:!!|||||| ThrProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyr 11554 : ACGCCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTAT : 11613 175 : TyrLeuIleLeuMetHisLeuAlaIleAlaValTyrIleGlyIleIleValThrLeuAla : 194 |||! !|||:!!:!:||| !.!! !.!!|||! |||! !:!::!:||| !! !||| TyrTyrIleIleLeuHisGlyThrCysThrValLeuIleValValValValTyrCysAla 11614 : TATTACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTGCC : 11673 195 : ValGlyThrMetLeuIleAlaPheTyrHisAsnThrCysGlyValPheArgIleAla : 213 !! !|||! ! !!!:!.!.!. !!.:!!|||||||||:!!||| !:!:||| CysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAla 11674 : TGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCC : 11732 vulgar: CbirOr360 134 213 . LHQN01025741.1 11495 11732 + 107 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11496 11732 107 + . gene_id 1 ; sequence CbirOr360 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11496 11732 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11496 11732 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11496 11732 107 + . alignment_id 1 ; Query CbirOr360 ; Align 11496 135 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr371PSE(F) Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 159 -> 214 Target range: 11567 -> 11732 160 : GlnLeuTyrIleValAlaGluTyrPheIleAspGlnGlnLysTyrTyrTyrValIleLeu : 179 |||!!! !||| !!.! ! ||||||:!!|||:!! !:!!||||||||| !|||:!! GlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIle 11568 : CAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATA : 11625 180 : LeuHisMetAsnAlaAlaLeuPheIleGlyIleLeuThrLeuIleAlaMetGlyThrLeu : 199 |||||| !....!.!!:!!!!.|||! !:!::!!..!! ! !||| ! !||| ! LeuHisGlyThrCysThrValLeuIleValValValValTyrCysAlaCysAspThrSer 11626 : CTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGT : 11685 200 : LeuIleAlaTyrLeuGlnHisThrCysGlyMetPheLysIleAla : 214 ! !!!:!.! :!!|||||||||||||||:!!||| :!:||| TyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAla 11686 : TACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCC : 11732 vulgar: CbirOr371PSE(F) 159 214 . LHQN01025741.1 11567 11732 + 118 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11568 11732 118 + . gene_id 1 ; sequence CbirOr371PSE(F) ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11568 11732 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11568 11732 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11568 11732 118 + . alignment_id 1 ; Query CbirOr371PSE(F) ; Align 11568 160 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr364PNC Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 113 -> 170 Target range: 11561 -> 11732 114 : SerHisArgLeuCysIleAlaAlaAspTyrPheThrAspGlnGlnTyrTyrTyrTyrThr : 133 ||| !:!!!! !||| !!!.! !!||||||..!|||:!! ! ! ||||||||| ! SerLeuGlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyrTyrTyr 11562 : AGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTATTAC : 11619 134 : IleValLeuCysMetThrAlaAlaValSerIleGlyValLeuThrIleIleAlaThrGly : 153 |||:!!||| ! |||..!.!!|||! !|||! !|||:!!..! ! !||| !! ! IleIleLeuHisGlyThrCysThrValLeuIleValValValValTyrCysAlaCysAsp 11620 : ATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGAC : 11679 154 : ThrLeuMetIleValTyrLeuGlnHisThrCysGlyMetPheArgIleAla : 170 ||| ! !!:||| :!!|||||||||||||||:!!||| !:!:||| ThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAla 11680 : ACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCC : 11732 vulgar: CbirOr364PNC 113 170 . LHQN01025741.1 11561 11732 + 109 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11562 11732 109 + . gene_id 1 ; sequence CbirOr364PNC ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11562 11732 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11562 11732 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11562 11732 109 + . alignment_id 1 ; Query CbirOr364PNC ; Align 11562 114 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr363 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 166 -> 214 Target range: 1134 -> 990 167 : TyrPheIleAspGlnGlnLysTyrTyrTyrValIleLeuLeuHisMetAsnAlaAlaIlePh : 187 ||||||:!!|||:!! !:!!||||||||| !|||:!!|||||| !....!.!!:!!!! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLe 1134 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTT : 1074 188 : eIleGlyValLeuThrPheLeuAlaMetGlyThrLeuMetIleAlaTyrLeuGlnHisThrC : 208 .|||! !|||:!!..!!:!! !||| ! !||| ! !!:!.! :!!|||||||||| uIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrC 1073 : GATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTT : 1011 209 : ysGlyMetPheThrIleAla : 214 |||||:!!|||.!!:!:||| ysGlyLeuPheAlaValAla 1010 : GCGGACTGTTCGCCGTGGCC : 991 vulgar: CbirOr363 166 214 . LHQN01027734.1 1134 990 - 122 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 991 1134 122 - . gene_id 1 ; sequence CbirOr363 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 991 1134 . - . LHQN01027734.1 exonerate:protein2genome:local exon 991 1134 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 991 1134 122 - . alignment_id 1 ; Query CbirOr363 ; Align 1135 167 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr371PSE(F) Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 166 -> 214 Target range: 1134 -> 990 167 : TyrPheIleAspGlnGlnLysTyrTyrTyrValIleLeuLeuHisMetAsnAlaAlaLeuPh : 187 ||||||:!!|||:!! !:!!||||||||| !|||:!!|||||| !....!.!!:!!!! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLe 1134 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTT : 1074 188 : eIleGlyIleLeuThrLeuIleAlaMetGlyThrLeuLeuIleAlaTyrLeuGlnHisThrC : 208 .|||! !:!::!!..!! ! !||| ! !||| !! !!!:!.! :!!|||||||||| uIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrC 1073 : GATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTT : 1011 209 : ysGlyMetPheLysIleAla : 214 |||||:!!||| :!:||| ysGlyLeuPheAlaValAla 1010 : GCGGACTGTTCGCCGTGGCC : 991 vulgar: CbirOr371PSE(F) 166 214 . LHQN01027734.1 1134 990 - 114 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 991 1134 114 - . gene_id 1 ; sequence CbirOr371PSE(F) ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 991 1134 . - . LHQN01027734.1 exonerate:protein2genome:local exon 991 1134 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 991 1134 114 - . alignment_id 1 ; Query CbirOr371PSE(F) ; Align 1135 167 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr360 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 134 -> 213 Target range: 1227 -> 990 135 : LeuPheValValIleHisPheTrpSerAspValLeuAspValIlePheGlnIleAsnIleSe : 155 ||||||:!! !:!:! !:: !!!! :!!:!!:!! ! ! ! ||||||!! LeuPheIleGlnValProTrpThrThrArgMetValAsnSerTyrLysThrGlnAsnIleTh 1227 : TTGTTCATACAAGTGCCATGGACGACCCGAATGGTGAACTCGTACAAGACACAGAATATAAC : 1167 156 : rArgSerHisAsnLeuProIleIleThrGluTyrPheIleAsnGlnGluLysTyrTyrTyrL : 176 !! !||| :!! !:!! ! ! ! ||||||:!!:!!:!!! !:!!|||||||||! rProSerLeuProValValValProGlyTyrTyrPheValAspGluValGluTyrTyrTyrT 1166 : GCCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTATT : 1104 177 : euIleLeuMetHisLeuAlaIleAlaValTyrIleGlyIleIleValThrLeuAlaValGly : 196 !|||:!!:!:||| !.!! !.!!|||! |||! !:!::!:||| !! !||| !! ! yrIleIleLeuHisGlyThrCysThrValLeuIleValValValValTyrCysAlaCysAsp 1103 : ACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGAC : 1044 197 : ThrMetLeuIleAlaPheTyrHisAsnThrCysGlyValPheArgIleAla : 213 |||! ! !!!:!.!.!. !!.:!!|||||||||:!!||| !:!:||| ThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAla 1043 : ACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCC : 991 vulgar: CbirOr360 134 213 . LHQN01027734.1 1227 990 - 105 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 991 1227 105 - . gene_id 1 ; sequence CbirOr360 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 991 1227 . - . LHQN01027734.1 exonerate:protein2genome:local exon 991 1227 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 991 1227 105 - . alignment_id 1 ; Query CbirOr360 ; Align 1228 135 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr364PNC Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 122 -> 170 Target range: 1134 -> 990 123 : TyrPheThrAspGlnGlnTyrTyrTyrTyrThrIleValLeuCysMetThrAlaAlaValSe : 143 ||||||..!|||:!! ! ! ||||||||| !|||:!!||| ! |||..!.!!|||! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLe 1134 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTT : 1074 144 : rIleGlyValLeuThrIleIleAlaThrGlyThrLeuMetIleValTyrLeuGlnHisThrC : 164 !|||! !|||:!!..! ! !||| !! !||| ! !!:||| :!!|||||||||| uIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrC 1073 : GATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTT : 1011 165 : ysGlyMetPheArgIleAla : 170 |||||:!!||| !:!:||| ysGlyLeuPheAlaValAla 1010 : GCGGACTGTTCGCCGTGGCC : 991 vulgar: CbirOr364PNC 122 170 . LHQN01027734.1 1134 990 - 108 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 991 1134 108 - . gene_id 1 ; sequence CbirOr364PNC ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 991 1134 . - . LHQN01027734.1 exonerate:protein2genome:local exon 991 1134 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 991 1134 108 - . alignment_id 1 ; Query CbirOr364PNC ; Align 1135 123 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr387INT Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 157 -> 211 Target range: 541 -> 703 158 : LysMetLeuIleMetThrGluTyrPheValAspGlnGluLysTyrMetTyrPheIleLeuLeuH : 179 |||:!:|||:!! |||||||||||||||||| ! :!! ! |||!!:|||.!.||| !:!!| LysLeuLeuValArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIleH 542 : AAATTACTCGTTCGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCC : 605 180 : isLeuTyrSerAlaIleCysIleAlaValAlaThrLeuValGlyThrAlaIleLeuMetThrGl : 200 || ! !! !|||||| !::!|||.!!! !! !:!!.!!!:!! !|||||| ... isAlaThrIleAlaIleMetCysSerValThrMetGlnIleSerSerAspIleLeuAsnAsnIl 606 : ACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaataacat : 668 201 : yTyrPheIleHisPheCysGlyLeuPheAspIle : 211 :::...!!:|||.!! !!|||:!!|||!!::!! ePheMetMetHisIleSerGlyMetPheGluVal 669 : atttatGATGCACATCAGTGGAATGTTCGAGGTA : 703 vulgar: CbirOr387INT 157 211 . LHQN01050134.1 541 703 + 110 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 542 703 110 + . gene_id 1 ; sequence CbirOr387INT ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 542 703 . + . LHQN01050134.1 exonerate:protein2genome:local exon 542 703 . + . insertions 0 ; deletions 0 LHQN01050134.1 exonerate:protein2genome:local similarity 542 703 110 + . alignment_id 1 ; Query CbirOr387INT ; Align 542 158 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr406 Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 157 -> 215 Target range: 357464 -> 357638 158 : GluSerTyrArgLysIleTyrIleArgThrGluTyrPheValAspGluGluLysTyrP : 177 ||||||! ! !!!.:!!|||.!!! !! !!!:||||||||||||:::|||||||||| GluSerSerSerAsnLeuTyrPheThrIleAspTyrPheValAspAspGluLysTyrP 357465 : GAATCGTCTTCGAATCTATACTTCACCATAGACTACTTCGTCGACgacgaaaaatact : 357522 178 : heTyrPheIleLeuLeuHisLeuTyrAlaAlaGlnTyrIleAlaValGlyThrLeuIl : 196 ||||| !!! !!!||||||:!!||| ! ! ! !:!!!.! ! !..!:!!:! heTyrValLysPheLeuHisValTyrLeuTyrPheSerLeuGlySerThrValIleLe 357523 : tttacgTCAAGTTCTTACATGTGTATCTATATTTTTCCCTCGGAAGTACAGTCATTCT : 357579 197 : eGlyAlaGlyIleLeuValThrGlyTyrSerThrTyrPheCysGlyLeuPheAsnIle : 215 !|||:!!! !:!! !..!! ! !!:!:!!!.!!:! ! !||||||!:!.!.:!! uGlySerGluValThrThrIleMetPheAlaAsnPheAlaSerGlyLeuTyrGlnVal 357580 : AGGATCAGAAGTAACAACTATTATGTTCGCTAATTTTGCGTCTGGGTTATATCAGGTA : 357636 vulgar: CbirOr406 157 215 . KQ414693.1 357464 357638 + 103 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 357465 357638 103 + . gene_id 1 ; sequence CbirOr406 ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 357465 357638 . + . KQ414693.1 exonerate:protein2genome:local exon 357465 357638 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 357465 357638 103 + . alignment_id 1 ; Query CbirOr406 ; Align 357465 158 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr417INT Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 153 -> 211 Target range: 357464 -> 357638 154 : GluProTyrArgAsnIleTyrIleArgThrGluTyrPheValAspGluGluLysTyrP : 173 ||| !!! ! !|||:!!|||.!!! !! !!!:||||||||||||:::|||||||||| GluSerSerSerAsnLeuTyrPheThrIleAspTyrPheValAspAspGluLysTyrP 357465 : GAATCGTCTTCGAATCTATACTTCACCATAGACTACTTCGTCGACgacgaaaaatact : 357522 174 : heTyrPheIleLeuLeuHisLeuTyrAlaValLeuTyrIleAlaAlaGlyThrIleLe : 192 ||||| !!! !!!||||||:!!||| ! !!!!! !:!!!.!::! !..!||||| heTyrValLysPheLeuHisValTyrLeuTyrPheSerLeuGlySerThrValIleLe 357523 : tttacgTCAAGTTCTTACATGTGTATCTATATTTTTCCCTCGGAAGTACAGTCATTCT : 357579 193 : uAlaThrGlnThrAlaMetLeuGlyTyrPheIleTyrCysCysGlyLeuPheAsnIle : 211 |!.!:!!:!!..!.!!! :!! !!:! !! !!:!...! !||||||!:!.!.:!! uGlySerGluValThrThrIleMetPheAlaAsnPheAlaSerGlyLeuTyrGlnVal 357580 : AGGATCAGAAGTAACAACTATTATGTTCGCTAATTTTGCGTCTGGGTTATATCAGGTA : 357636 vulgar: CbirOr417INT 153 211 . KQ414693.1 357464 357638 + 109 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 357465 357638 109 + . gene_id 1 ; sequence CbirOr417INT ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 357465 357638 . + . KQ414693.1 exonerate:protein2genome:local exon 357465 357638 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 357465 357638 109 + . alignment_id 1 ; Query CbirOr417INT ; Align 357465 154 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr420PC Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 149 -> 211 Target range: 357452 -> 357638 150 : ValAsnValSerGluProTyrArgAsnIleTyrIleArgThrGluTyrPheValAspG : 169 :!!!:!:!!!!!||| !!! ! !|||:!!|||.!!! !! !!!:||||||||||||: LeuSerIleCysGluSerSerSerAsnLeuTyrPheThrIleAspTyrPheValAspA 357453 : TTAAGTATTTGCGAATCGTCTTCGAATCTATACTTCACCATAGACTACTTCGTCGACg : 357510 170 : luGluGluTyrPheTyrPheIleLeuLeuHisLeuTyrAlaValThrTyrIleGluGl : 188 ::|||:::||||||||| !!! !!!||||||:!!||| ! ! !! !:!!! !.! spGluLysTyrPheTyrValLysPheLeuHisValTyrLeuTyrPheSerLeuGlySe 357511 : acgaaaaatacttttacgTCAAGTTCTTACATGTGTATCTATATTTTTCCCTCGGAAG : 357567 189 : yValThrLeuLeuGlyGlyAlaValThrMetThrGlyTyrGlyIleTyrSerCysGly : 207 !..!..!:!!||||||..!! !||||||! ! ! !!:!!.!! !!:!:!!! !||| rThrValIleLeuGlySerGluValThrThrIleMetPheAlaAsnPheAlaSerGly 357568 : TACAGTCATTCTAGGATCAGAAGTAACAACTATTATGTTCGCTAATTTTGCGTCTGGG : 357624 208 : LeuPheAsnIle : 211 |||!:!.!.:!! LeuTyrGlnVal 357625 : TTATATCAGGTA : 357638 vulgar: CbirOr420PC 149 211 . KQ414693.1 357452 357638 + 115 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 357453 357638 115 + . gene_id 1 ; sequence CbirOr420PC ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 357453 357638 . + . KQ414693.1 exonerate:protein2genome:local exon 357453 357638 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 357453 357638 115 + . alignment_id 1 ; Query CbirOr420PC ; Align 357453 150 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr410PI Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 288 -> 337 Target range: 358639 -> 358786 289 : LeuPheGlyTyrAsnValLysTrpTyrThrAlaSerValArgValGlnArgLeuIleL : 308 |||!:! !!|||!:! ! !||||||||||||||||||! !!.!|||!:! !:!:| LeuTyrArgTyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuL 358640 : CTTTATAGGTACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGT : 358697 309 : euIleLeuLeuGlnIleSerAlaLysProTyrGlyLeuAsnValSerGlyLeuPheIl : 327 || !:!!:!!||| !||| !:!! !|||..!!!!::::!!.!!|||||||||:! euTyrIleMetGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheVa 358698 : TATACATCATGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGT : 358754 328 : eThrSerLeuGluAsnPheAlaSerLeuSer : 337 : !!|||! !:!!...|||:!!!!!:!!!!! lProSerTyrGlnGlyPheSerThrValThr 358755 : GCCGAGTTACCAAGGATTTTCTACGGTAACA : 358786 vulgar: CbirOr410PI 288 337 . KQ414693.1 358639 358786 + 106 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358640 358786 106 + . gene_id 1 ; sequence CbirOr410PI ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 358640 358786 . + . KQ414693.1 exonerate:protein2genome:local exon 358640 358786 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358640 358786 106 + . alignment_id 1 ; Query CbirOr410PI ; Align 358640 289 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr410PI Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 162 -> 220 Target range: 357464 -> 357638 163 : GluProTyrArgAsnIleTyrIleThrThrGluTyrPheValAspGlnGluLysAsnP : 182 ||| !!! ! !|||:!!|||.!!|||! !!!:||||||||||||...|||||| | GluSerSerSerAsnLeuTyrPheThrIleAspTyrPheValAspAspGluLysTyrP 357465 : GAATCGTCTTCGAATCTATACTTCACCATAGACTACTTCGTCGACgacgaaaaatact : 357522 183 : heTyrPheIlePheLeuHisLeuTyrLeuSerHisTyrIleAlaValSerThrLeuVa : 201 ||||| !!! |||||||||:!!||||||! ! !! !:!!!.! !!!!..!:!!:! heTyrValLysPheLeuHisValTyrLeuTyrPheSerLeuGlySerThrValIleLe 357523 : tttacgTCAAGTTCTTACATGTGTATCTATATTTTTCCCTCGGAAGTACAGTCATTCT : 357579 202 : lGlyThrGlyIleLeuIleThrGlyTyrPheIleHisPheCysGlyLeuPheAsnVal : 220 !|||:!!! !:!! !! !! ! !!:! !! ! ! ! !||||||!:!.!.||| uGlySerGluValThrThrIleMetPheAlaAsnPheAlaSerGlyLeuTyrGlnVal 357580 : AGGATCAGAAGTAACAACTATTATGTTCGCTAATTTTGCGTCTGGGTTATATCAGGTA : 357636 vulgar: CbirOr410PI 162 220 . KQ414693.1 357464 357638 + 104 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 357465 357638 104 + . gene_id 2 ; sequence CbirOr410PI ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 357465 357638 . + . KQ414693.1 exonerate:protein2genome:local exon 357465 357638 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 357465 357638 104 + . alignment_id 2 ; Query CbirOr410PI ; Align 357465 163 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr407PSE Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 136 -> 194 Target range: 357464 -> 357638 137 : GluThrTyrCysThrMetTyrIleThrThrGluTyrPheValAspGluGluLysTyrP : 156 |||:!!! !! !.!:!:|||.!!|||! !!!:||||||||||||:::|||||||||| GluSerSerSerAsnLeuTyrPheThrIleAspTyrPheValAspAspGluLysTyrP 357465 : GAATCGTCTTCGAATCTATACTTCACCATAGACTACTTCGTCGACgacgaaaaatact : 357522 157 : heTyrPheIleLeuLeuHisLeuTyrAlaAlaHisTyrIleAlaLeuGlyThrLeuLe : 175 ||||| !!! !!!||||||:!!||| ! ! !! !:!!!.! ! !..!:!!|| heTyrValLysPheLeuHisValTyrLeuTyrPheSerLeuGlySerThrValIleLe 357523 : tttacgTCAAGTTCTTACATGTGTATCTATATTTTTCCCTCGGAAGTACAGTCATTCT : 357579 176 : uGlyIleGlyIleMetSerThrGlyTyrPheThrTyrPheCysGlyLeuPheGluIle : 194 |||| !! !:!!! !!!! ! !!:! !!.!!:! ! !||||||!:!:!!:!! uGlySerGluValThrThrIleMetPheAlaAsnPheAlaSerGlyLeuTyrGlnVal 357580 : AGGATCAGAAGTAACAACTATTATGTTCGCTAATTTTGCGTCTGGGTTATATCAGGTA : 357636 vulgar: CbirOr407PSE 136 194 . KQ414693.1 357464 357638 + 107 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 357465 357638 107 + . gene_id 1 ; sequence CbirOr407PSE ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 357465 357638 . + . KQ414693.1 exonerate:protein2genome:local exon 357465 357638 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 357465 357638 107 + . alignment_id 1 ; Query CbirOr407PSE ; Align 357465 137 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr409 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 123 -> 216 Target range: 42751 -> 42475 124 : ThrLeuIleMetSerValTyrSerIleSerAsnAlaLeuIleLeuCysLeuLeuProIle : 143 :::...|||...:::||| !.!!|||!!! ! ! !!!:!!! !! ! !||| ! SerPheIlePheThrValThrGlyIleCysCysPheThrMetPheIleSerAlaProTyr 42751 : tctttcattttcacagTAACTGGAATATGTTGCTTCACAATGTTTATCTCTGCGCCTTAT : 42694 144 : ValProArgIleLeuGlyIlePheThrSerIleAsnValSerGluGluTyrPheMetIle : 163 :!!|||!.!:!!! !! !:!!.!. !|||! !|||! !|||..!:!!! !.!.||| IleProHisValTyrAspValMetLeuSerLysAsnGluSerArgLysLeuGlyPheIle 42693 : ATACCGCATGTATATGATGTTATGTTATCGAAAAACGAGTCACGAAAGTTGGGTTTCATT : 42634 164 : HisValProArgGluTyrPheIleAspGlnGluLysTyrTyrTyrTyrIleLeuLeuHis : 183 :!! ||| ! ! ||| !:!!||||||!!:||||||||||||||||||:!! !||| Tyr---ProAlaTyrTyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAlaHis 42633 : TAC---CCTGCCTATTATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCTCAC : 42577 184 : MetGluAlaAsnPhePheIleGlyAlaIleValLeuLeuAlaThrGlyThrMetLeuPhe : 203 ||| !:!!... !!!.:!:! ! !.!!..!!!!:!!:!! !! !|||!!:! !.!. MetThrSerGlyGlyLeuValValPhePheThrPheIleSerCysAspThrIleTyrMet 42576 : ATGACATCTGGGGGCTTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTACATG : 42517 204 : GlyCysIleLysTyrIleCysGlyLeuPheArgIleAla : 216 ..! !:!::!!:!! |||||||||!!. !|||:!! AsnIleValGlnHisAlaCysGlyLeuLeuLeuIleSer 42516 : AATATCGTGCAACACGCGTGCGGATTGTTGTTGATTTCT : 42476 vulgar: CbirOr409 123 216 . KQ414772.1 42751 42475 - 117 M 41 123 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42476 42751 117 - . gene_id 1 ; sequence CbirOr409 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42476 42751 . - . KQ414772.1 exonerate:protein2genome:local exon 42476 42751 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 42476 42751 117 - . alignment_id 1 ; Query CbirOr409 ; Align 42752 124 123 ; Align 42629 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr409 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 164 -> 239 Target range: 17961 -> 17736 165 : ValProArgGluTyrPheIleAspGlnGluLysTyrTyrTyrTyrIleLeuLeuHisMet : 184 :!!||| !! ! ||||||:!!|||:!!! !:!!|||||||||||||||:!!|||||| IleProGlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGly 17961 : ATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGA : 17904 185 : GluAlaAsnPhePheIleGlyAlaIleValLeuLeuAlaThrGlyThrMetLeuPheGly : 204 !..!!...!!!!.|||! !!.!:!:|||! !! !||| !! !|||! ! !.!.! ! ThrCysThrIleLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetVal 17903 : ACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTA : 17844 205 : CysIleLysTyrIleCysGlyLeuPheArgIleAlaSerCysArgIleAspGlnThrMet : 224 :!::!!:!!! !|||||||||||| !:!:|||.!!!! ..!! ! ::: LeuValGlnHisThrCysGlyLeuPheAlaValAlaGly***GluAsnLeuArgAspThr 17843 : CTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGGTGAGAAAACTTGAGagataca : 17784 225 : GluThrSerMetPheGlnSerAlaGlyLeuSerLysAspCysVal : 239 |||...|||!.!..!! !! ! !||||||||| PhePheLeuSerPheSerSerGlyAsnTyrTyr***AspCysVal 17783 : ttttttctctcattttcgtCGGGAAACTATTATTGAGATTGCGTG : 17737 vulgar: CbirOr409 164 239 . KQ414772.1 17961 17736 - 116 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17737 17961 116 - . gene_id 2 ; sequence CbirOr409 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17737 17961 . - . KQ414772.1 exonerate:protein2genome:local exon 17737 17961 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17737 17961 116 - . alignment_id 2 ; Query CbirOr409 ; Align 17962 165 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr409 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 141 -> 216 Target range: 33637 -> 33415 142 : ProIleValProArgIleLeuGlyIlePheThrSerIleAsnValSerGluGluTyrPhe : 161 |||.!!:!!|||!.!.!!:!!! !:!! !|||! !|||! !|||..!:!!! ! ProPheIleProHisPheIleAspValAlaLeuSerLysAsnGluSerArgLysLeuSer 33637 : CCTTTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAACGAGTCACGAAAATTAAGT : 33580 162 : MetIleHisValProArgGluTyrPheIleAspGlnGluLysTyrTyrTyrTyrIleLeu : 181 :!!!!::!! ||| ! ! ||| !|||||||||!::|||||||||||||||:::::: LeuMetTyr---ProAlaTyrTyrGlyIleAspGlnAspLysTyrTyrTyrTyrLeuMet 33579 : TTGATGTAC---CCTGCCTATTACGGCATTGACCAGGacaagtattattattatctaatg : 33523 182 : LeuHisMetGluAlaAsnPhePheIleGlyAlaIleValLeuLeuAlaThrGlyThrMet : 201 !|||||| !::! ! ! !.!!|||!!!:!!:!! !! !|||!!: AlaHisMetMetSerAlaGlyAlaAlaValPhePheValPheMetSerCysAspThrIle 33522 : GCTCACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATGTCCTGCGACACGATT : 33463 202 : LeuPheGlyCysIleLysTyrIleCysGlyLeuPheArgIleAla : 216 ! !.!...! !:!!:!!:!! |||||||||!!. !|||:!! TyrMetAsnIleValGlnHisAlaCysGlyLeuLeuPheIleSer 33462 : TATATGAATATCGTTCAACACGCGTGCGGATTGTTGTTCATTTCC : 33416 vulgar: CbirOr409 141 216 . KQ414772.1 33637 33415 - 107 M 23 69 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33416 33637 107 - . gene_id 3 ; sequence CbirOr409 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33416 33637 . - . KQ414772.1 exonerate:protein2genome:local exon 33416 33637 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 33416 33637 107 - . alignment_id 3 ; Query CbirOr409 ; Align 33638 142 69 ; Align 33569 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr405PN Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 79 -> 167 Target range: 42736 -> 42475 80 : LeuLeuGlyMetCysCysLeuIleIlePheThrLeuValProIleLeuProArgIlePhe : 99 :!! !|||!!:||||||!!!! !!!:|||! !! !!.!||| !:!!|||!.!:!!!:! ValThrGlyIleCysCysPheThrMetPheIleSerAlaProTyrIleProHisValTyr 42736 : gTAACTGGAATATGTTGCTTCACAATGTTTATCTCTGCGCCTTATATACCGCATGTATAT : 42679 100 : AspIlePhePheLeuValAsnLysSerGluProTyrArgTyrIleTyrMetLysThrGlu : 119 |||:!!.!.!!.! ! !|||:!!|||..! !! !!!:!|||||| .!! ! AspValMetLeuSerLysAsnGluSerArgLysLeuGlyPheIleTyr---ProAlaTyr 42678 : GATGTTATGTTATCGAAAAACGAGTCACGAAAGTTGGGTTTCATTTAC---CCTGCCTAT : 42622 120 : TyrPheIleAspGlnGluLysTyrPheTyrPheIleLeuLeuHisLeuTyrAlaValLeu : 139 ||| !:!!||||||!!:||||||!:!|||!:!|||:!! !|||:!! :!!! ! ! TyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAlaHisMetThrSerGlyGly 42621 : TATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCTCACATGACATCTGGGGGC : 42562 140 : TyrIleGlyGlyAlaThrLeuValValAlaGlyIleValLeuThrGlyTyrPheThrTyr : 159 ! :!:! ! ! !|||!!!:!! !..!! !! :!!! !! !..! ! ! !:!! LeuValValPhePheThrPheIleSerCysAspThrIleTyrMetAsnIleValGlnHis 42561 : TTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTACATGAATATCGTGCAACAC : 42502 160 : PheCysGlyLeuPheAsnIleAla : 167 |||||||||!!. |||:!! AlaCysGlyLeuLeuLeuIleSer 42501 : GCGTGCGGATTGTTGTTGATTTCT : 42476 vulgar: CbirOr405PN 79 167 . KQ414772.1 42736 42475 - 123 M 36 108 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42476 42736 123 - . gene_id 1 ; sequence CbirOr405PN ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42476 42736 . - . KQ414772.1 exonerate:protein2genome:local exon 42476 42736 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 42476 42736 123 - . alignment_id 1 ; Query CbirOr405PN ; Align 42737 80 108 ; Align 42629 117 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr396CTE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 149 -> 221 Target range: 18018 -> 17805 150 : ThrArgIleLeuArgThrPheThrSerThrAsnValSerGluGluHisPheMetIleHis : 169 ||||||:!::!!!.!:!!!:!! !!!! !|||:!!!!! !... !!.....!! ! ThrArgLeuValAsnSerTyrLysThrGlnAsnIleThrProSer---LeuGlnPheVal 18018 : ACCCGATTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGT---TTGCAATTCGTC : 17964 170 : IleProThrGluTyrPheIleAsnGlnGluLysTyrTyrTyrTyrIleValLeuHisMet : 189 |||||| ! ! ||||||:!!:!!:!!! !:!!|||||||||||||||:!!|||||| IleProGlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGly 17963 : ATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGA : 17904 190 : AspAlaSerValPheIleGlySerIleValLeuProAlaThrGlyThrLeuLeuPheGly : 209 ..!!!!:!!!!.|||! ! !:!:|||! ! !||| !! !||| !! !.!.! ! ThrCysThrIleLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetVal 17903 : ACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTA : 17844 210 : CysMetLysTyrMetCysGlyLeuPheArgIleAla : 221 :!!:!!:!!! |||||||||||| !:!:||| LeuValGlnHisThrCysGlyLeuPheAlaValAla 17843 : CTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCC : 17806 vulgar: CbirOr396CTE 149 221 . KQ414772.1 18018 17805 - 112 M 15 45 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17806 18018 112 - . gene_id 1 ; sequence CbirOr396CTE ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17806 18018 . - . KQ414772.1 exonerate:protein2genome:local exon 17806 18018 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 17806 18018 112 - . alignment_id 1 ; Query CbirOr396CTE ; Align 18019 150 45 ; Align 17974 166 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr402PSE(S) Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 122 -> 215 Target range: 42751 -> 42475 123 : AlaIleValPheThrLeuLeuThrIleCysGlyLeuPheIleLeuThrLeuLeuProPhe : 142 :::...:::||||||:!! ! !|||||| !!!!! !!:!!!! !! ! !|||!:! SerPheIlePheThrValThrGlyIleCysCysPheThrMetPheIleSerAlaProTyr 42751 : tctttcattttcacagTAACTGGAATATGTTGCTTCACAATGTTTATCTCTGCGCCTTAT : 42694 143 : LeuProArgIlePheSerIlePheSerLeuValAsnGluSerLysSerTyrCysAsnIle : 162 :!!|||!.!:!!!:!..!:!!.!.! !! ! !|||||||||::!!.!! !! !||| IleProHisValTyrAspValMetLeuSerLysAsnGluSerArgLysLeuGlyPheIle 42693 : ATACCGCATGTATATGATGTTATGTTATCGAAAAACGAGTCACGAAAGTTGGGTTTCATT : 42634 163 : TyrIleArgThrGluTyrPheValAspGlnGluLysTyrPheTyrPheIleLeuLeuHis : 182 ||| ! !.!! ! ||| !|||||||||!!:||||||!:!|||!:!|||:!! !||| Tyr---ProAlaTyrTyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAlaHis 42633 : TAC---CCTGCCTATTATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCTCAC : 42577 183 : LeuTyrValAlaGlnTyrIleThrGlyGlyIleLeuLeuGlyAlaAlaIleLeuLeuAla : 202 :!! !!.! ! :!:..! ! !! !!!!:!!..!..!! !! :!!! ! ! MetThrSerGlyGlyLeuValValPhePheThrPheIleSerCysAspThrIleTyrMet 42576 : ATGACATCTGGGGGCTTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTACATG : 42517 203 : GlyTyrIleThrTyrPheCysGlyLeuPheAsnIleAla : 215 ..! !:!: !:!! |||||||||!!. |||:!! AsnIleValGlnHisAlaCysGlyLeuLeuLeuIleSer 42516 : AATATCGTGCAACACGCGTGCGGATTGTTGTTGATTTCT : 42476 vulgar: CbirOr402PSE(S) 122 215 . KQ414772.1 42751 42475 - 110 M 41 123 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42476 42751 110 - . gene_id 1 ; sequence CbirOr402PSE(S) ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42476 42751 . - . KQ414772.1 exonerate:protein2genome:local exon 42476 42751 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 42476 42751 110 - . alignment_id 1 ; Query CbirOr402PSE(S) ; Align 42752 123 123 ; Align 42629 165 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr404 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 122 -> 212 Target range: 42742 -> 42475 123 : LeuThrLeuLeuGlyMetCysCysLeuIleIlePheThrLeuValProIleLeuProArg : 142 ...|||:!! !|||!!:||||||!!!! !!!:|||! !! !!.!||| !:!!|||!.! PheThrValThrGlyIleCysCysPheThrMetPheIleSerAlaProTyrIleProHis 42742 : ttcacagTAACTGGAATATGTTGCTTCACAATGTTTATCTCTGCGCCTTATATACCGCAT : 42685 143 : IlePheGlyIleLeuPheLeuValAsnLysSerGluProTyrArgTyrIleTyrMetLys : 162 :!!!:!! !:!!:!!!!.! ! !|||:!!|||..! !! !!!:!|||||| ValTyrAspValMetLeuSerLysAsnGluSerArgLysLeuGlyPheIleTyr---Pro 42684 : GTATATGATGTTATGTTATCGAAAAACGAGTCACGAAAGTTGGGTTTCATTTAC---CCT : 42628 163 : ThrGluTyrPheIleAspGlnGluLysTyrPheTyrPheIleLeuLeuHisLeuTyrAla : 182 .!! ! ||| !:!!||||||!!:||||||!:!|||!:!|||:!! !|||:!! :!! AlaTyrTyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAlaHisMetThrSer 42627 : GCCTATTATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCTCACATGACATCT : 42568 183 : ValGlnTyrIleGlyGlyGlyThrLeuLeuGlySerGlyIleValLeuThrGlyTyrPhe : 202 ! ! ! :!:! ! ! !|||!!!:!!..!!!!! !! :!!! !! !..! ! ! GlyGlyLeuValValPhePheThrPheIleSerCysAspThrIleTyrMetAsnIleVal 42567 : GGGGGCTTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTACATGAATATCGTG : 42508 203 : ThrTyrPheCysGlyLeuPheAsnIleAla : 212 !:!! |||||||||!!. |||:!! GlnHisAlaCysGlyLeuLeuLeuIleSer 42507 : CAACACGCGTGCGGATTGTTGTTGATTTCT : 42476 vulgar: CbirOr404 122 212 . KQ414772.1 42742 42475 - 124 M 38 114 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42476 42742 124 - . gene_id 1 ; sequence CbirOr404 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42476 42742 . - . KQ414772.1 exonerate:protein2genome:local exon 42476 42742 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 42476 42742 124 - . alignment_id 1 ; Query CbirOr404 ; Align 42743 123 114 ; Align 42629 162 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr425PC Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 133 -> 209 Target range: 33655 -> 33427 134 : IleSerPheAsnMetLeuProValValProTyrPheLeuAspIleIleLeuArgLeuAsn : 153 |||! !|||!:! ! !||| !!:!!|||:!!|||:!!|||:!! ||| ! !||| IleMetPheSerSerAlaProPheIleProHisPheIleAspValAlaLeuSerLysAsn 33655 : ATCATGTTCAGCTCGGCGCCTTTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAAC : 33598 154 : LysSerAsnLeuProMetGlnPheIleLeuThrGluTyrPheValAspGlnGluLysTyr : 173 :!!|||... ! !! !.!. !! !.!! ! ||| !:!!||||||!::|||||| GluSerArgLysLeuSerLeuMetTyrProAlaTyrTyrGlyIleAspGlnAspLysTyr 33597 : GAGTCACGAAAATTAAGTTTGATGTACCCTGCCTATTACGGCATTGACCAGGacaagtat : 33538 174 : LeuTyrLeuIleLeuLeuHisThrAsnValAlaPheSerIleArgGlyThrValPheAla : 193 ||| :::::: !|||! !! !||| :!! ! ! !|||||| ! TyrTyrTyrLeuMetAlaHisMetMetSerAlaGlyAlaAlaValPhePheValPheMet 33537 : tattattatctaatgGCTCACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATG : 33478 194 : AlaIleGlyLeuMetLeuLeuLeuTyrValGluHisGlyCysGlyIle : 209 :!! !! ! !!!:! !:!! ! !|||:!!|||!.!||||||:!: SerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeu 33477 : TCCTGCGACACGATTTATATGAATATCGTTCAACACGCGTGCGGATTG : 33428 vulgar: CbirOr425PC 133 209 . KQ414772.1 33655 33427 - 112 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33428 33655 112 - . gene_id 1 ; sequence CbirOr425PC ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33428 33655 . - . KQ414772.1 exonerate:protein2genome:local exon 33428 33655 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 33428 33655 112 - . alignment_id 1 ; Query CbirOr425PC ; Align 33656 134 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr425PC Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 129 -> 213 Target range: 14148 -> 13896 130 : ValCysTyrLeuIleSerPheAsnMetLeuProValValProTyrPheLeuAspIleIle : 149 :!! !! !:!!||| !||| ! !||||||..!|||:!!.!!|||||||||:!! IleValCysValIleLeuPheValThrThrProValThrProHisIleLeuAspIleLeu 14148 : ATCGTTTGTGTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATTTTGGACATTTTA : 14091 150 : LeuArgLeuAsnLysSerAsnLeuProMetGlnPheIleLeuThrGluTyrPheValAsp : 169 |||! ! !|||:!!|||... ! ! ! ! .!! !! !.!! ! ||||||..!||| LeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAsp 14090 : CTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGAC : 14031 170 : GlnGluLysTyrLeuTyrLeuIleLeuLeuHisThrAsnValAlaPheSerIleArgGly : 189 :!!.!.|||||| ! ! !|||:!! !|||! ! !!.!.!! !:!: ! ! GluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPhe 14030 : GAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTT : 13971 190 : ThrValPheAlaAlaIleGlyLeuMetLeuLeuLeuTyrValGluHisGlyCysGlyIle : 209 !|||!:!!.!||| !! ! !! ! !:!!! ! !|||:!!||||||||||||:!: TyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeu 13970 : TACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTG : 13911 210 : PheGlnLeuAla : 213 !!. :!!:!! LeuAlaValSer 13910 : TTGGCCGTGTCC : 13897 vulgar: CbirOr425PC 129 213 . KQ414772.1 14148 13896 - 109 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13897 14148 109 - . gene_id 2 ; sequence CbirOr425PC ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13897 14148 . - . KQ414772.1 exonerate:protein2genome:local exon 13897 14148 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13897 14148 109 - . alignment_id 2 ; Query CbirOr425PC ; Align 14149 130 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr425PC Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 129 -> 213 Target range: 42727 -> 42475 130 : ValCysTyrLeuIleSerPheAsnMetLeuProValValProTyrPheLeuAspIleIle : 149 :!!|||! !!!!! !! !|||! ! !||| !:!!|||:!! ! ! !|||:!!!!: IleCysCysPheThrMetPheIleSerAlaProTyrIleProHisValTyrAspValMet 42727 : ATATGTTGCTTCACAATGTTTATCTCTGCGCCTTATATACCGCATGTATATGATGTTATG : 42670 150 : LeuArgLeuAsnLysSerAsnLeuProMetGlnPheIleLeuThrGluTyrPheValAsp : 169 ||| ! !|||:!!|||... ! ! .!! !! !.!! ! ||| !|||||| LeuSerLysAsnGluSerArgLysLeuGlyPheIleTyrProAlaTyrTyrGlyValAsp 42669 : TTATCGAAAAACGAGTCACGAAAGTTGGGTTTCATTTACCCTGCCTATTATGGCGTTGAT : 42610 170 : GlnGluLysTyrLeuTyrLeuIleLeuLeuHisThrAsnValAlaPheSerIleArgGly : 189 |||!!:||||||! !|||! !|||:!! !|||! !!.. !!.! !! !:!: ! ! GlnAspLysTyrTyrTyrTyrIleIleAlaHisMetThrSerGlyGlyLeuValValPhe 42609 : CAAGACAAGTATTATTACTATATAATAGCTCACATGACATCTGGGGGCTTAGTGGTGTTT : 42550 190 : ThrValPheAlaAlaIleGlyLeuMetLeuLeuLeuTyrValGluHisGlyCysGlyIle : 209 !..!||| !:!! !! ! !!!:! !:!! ! !|||:!!|||!.!||||||:!: PheThrPheIleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeu 42549 : TTCACCTTTATCTCCTGCGACACGATTTACATGAATATCGTGCAACACGCGTGCGGATTG : 42490 210 : PheGlnLeuAla : 213 !!. !:!!:!! LeuLeuIleSer 42489 : TTGTTGATTTCT : 42476 vulgar: CbirOr425PC 129 213 . KQ414772.1 42727 42475 - 101 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42476 42727 101 - . gene_id 3 ; sequence CbirOr425PC ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42476 42727 . - . KQ414772.1 exonerate:protein2genome:local exon 42476 42727 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42476 42727 101 - . alignment_id 3 ; Query CbirOr425PC ; Align 42728 130 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr409 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 162 -> 239 Target range: 18351 -> 18120 163 : IleHisValProArgGluTyrPheIleAspGlnGluLysTyrTyrTyrTyrIleLeuLeu : 182 :!! !|||||| !! ! ||||||:!!|||:!!! !:!!|||||||||||||||:!!||| ValValValProGlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeu 18351 : GTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTT : 18294 183 : HisMetGluAlaAsnPhePheIleGlyAlaIleValLeuLeuAlaThrGlyThrMetLeu : 202 ||| !..!!...!!!!.|||! !!.!:!:|||! !! !||| !! !|||! ! ! HisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCysAspThrSerTyr 18293 : CACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTAC : 18234 203 : PheGlyCysIleLysTyrIleCysGlyLeuPheArgIleAlaSerCysArgIleAspGln : 222 .!.! ! :!::!!:!!! !|||||||||||| !:!:|||.!!!! ..!! ! ::: MetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly***GluAsnLeuArg 18233 : ATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGGTGAGAAAACTTGAGa : 18174 223 : ThrMetGluThrSerMetPheGlnSerAlaGlyLeuSerLysAspCysVal : 239 |||...|||!.!..!! !! ! !||||||||| AspThrPhePheLeuSerPheSerSerGlyAsnTyrTyr***AspCysVal 18173 : gatacattttttctctcattttcgtCGGGAAACTATTATTGAGATTGCGTG : 18121 vulgar: CbirOr409 162 239 . LHQN01017803.1 18351 18120 - 117 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18121 18351 117 - . gene_id 1 ; sequence CbirOr409 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18121 18351 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18121 18351 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18121 18351 117 - . alignment_id 1 ; Query CbirOr409 ; Align 18352 163 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr425PC Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 129 -> 213 Target range: 14185 -> 13933 130 : ValCysTyrLeuIleSerPheAsnMetLeuProValValProTyrPheLeuAspIleIle : 149 :!! !! !:!!||| !||| ! !||||||..!|||:!!.!!|||||||||:!! IleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeu 14185 : ATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTA : 14128 150 : LeuArgLeuAsnLysSerAsnLeuProMetGlnPheIleLeuThrGluTyrPheValAsp : 169 |||! ! !|||:!!|||... ! ! ! ! .!! !! !.!! ! ||||||..!||| LeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAsp 14127 : CTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTATCCGGCCTATTATTTCACCGAC : 14068 170 : GlnGluLysTyrLeuTyrLeuIleLeuLeuHisThrAsnValAlaPheSerIleArgGly : 189 :!!.!.|||||| ! ! !|||:!! !|||! ! !!.!.!! !:!: ! ! GluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPhe 14067 : GAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTT : 14008 190 : ThrValPheAlaAlaIleGlyLeuMetLeuLeuLeuTyrValGluHisGlyCysGlyIle : 209 !|||!:!!.!||| !! ! !! ! !:!!! ! !|||:!!||||||||||||:!: TyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeu 14007 : TACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTG : 13948 210 : PheGlnLeuAla : 213 !!. :!!:!! LeuAlaValSer 13947 : TTGGCCGTGTCC : 13934 vulgar: CbirOr425PC 129 213 . LHQN01017803.1 14185 13933 - 109 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13934 14185 109 - . gene_id 1 ; sequence CbirOr425PC ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13934 14185 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13934 14185 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13934 14185 109 - . alignment_id 1 ; Query CbirOr425PC ; Align 14186 130 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr398PSE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 123 -> 213 Target range: 26228 -> 25958 124 : IlePheThrLeuLeuProIleLeuProArgIlePheArgIlePhePheValValAsnLys : 143 :!!|||! !! !||||||.!!:!! !!! !|||.!. !|||.!!.!. !:!!|||:!! LeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGlu 26228 : CTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAG : 26171 144 : SerGluProPheArgAsnValTyrIleThrGluTyrPheValAspGluGluLysTyrPhe : 163 !!!..! !! ! !|||||| !.!! ! |||||||||||||||!!:|||||| ! ThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHis 26170 : ACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCAT : 26111 164 : TyrPheIleLeuLeuHisMetTyrAlaThrGlnTyrIleAlaGlyGlyThrLeuLeuAla : 183 |||!!.|||:!! !||||||||| !..! ! !!: ! !..!..!!!!! !||| TyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 26110 : TACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 26051 184 : AlaGlyIleValValMetGlyTyrLeuThrCysValCysGlyLeuPheAsnIleAlaSer : 203 ..!! ! ! ! !:!! ! !:!! ! !!.!|||||||||!!. !||||||.!! CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 26050 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 25991 204 : TyrArgIleGluGlnAlaMetLeuLeuAsn : 213 !! !:!!:!! ! !:!::!! !||| ***LeuValGlnGlyGlnLeuMetGluAsn 25990 : TAATTAGTTCAAGGACAATTAATGGAAAAT : 25959 vulgar: CbirOr398PSE 123 213 . LHQN01017803.1 26228 25958 - 104 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25959 26228 104 - . gene_id 1 ; sequence CbirOr398PSE ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25959 26228 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25959 26228 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25959 26228 104 - . alignment_id 1 ; Query CbirOr398PSE ; Align 26229 124 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr396CTE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 149 -> 221 Target range: 18402 -> 18189 150 : ThrArgIleLeuArgThrPheThrSerThrAsnValSerGluGluHisPheMetIleHis : 169 ||||||:!::!!!.!:!!!:!! !!!! !|||:!!!!! !... !!. :!! ! ThrArgLeuValAsnSerTyrLysThrGlnAsnIleThrProSer---LeuProValVal 18402 : ACCCGATTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGT---TTGCCAGTCGTC : 18348 170 : IleProThrGluTyrPheIleAsnGlnGluLysTyrTyrTyrTyrIleValLeuHisMet : 189 :!!||| ! ! ||||||:!!:!!:!!! !:!!|||||||||||||||:!!|||||| ValProGlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGly 18347 : GTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGA : 18288 190 : AspAlaSerValPheIleGlySerIleValLeuProAlaThrGlyThrLeuLeuPheGly : 209 ..!!!!:!!!!.|||! ! !:!:|||! ! !||| !! !||| !! !.!.! ! ThrCysThrIleLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetVal 18287 : ACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTA : 18228 210 : CysMetLysTyrMetCysGlyLeuPheArgIleAla : 221 :!!:!!:!!! |||||||||||| !:!:||| LeuValGlnHisThrCysGlyLeuPheAlaValAla 18227 : CTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCC : 18190 vulgar: CbirOr396CTE 149 221 . LHQN01017803.1 18402 18189 - 112 M 15 45 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18190 18402 112 - . gene_id 1 ; sequence CbirOr396CTE ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18190 18402 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18190 18402 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 18190 18402 112 - . alignment_id 1 ; Query CbirOr396CTE ; Align 18403 150 45 ; Align 18358 166 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr404 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 3 -> 47 Target range: 477940 -> 478072 4 : GlnPheLeuTyrIleHisArgLeuSerLeuValAlaIleGlyLeuTrpProTyrHisA : 23 |||!:!! ! !!.!!|||!:! ! !|||..!||||||||||||||||||||||||! GlnTyrTyrAsnPheHisLysAsnLeuLeuThrAlaIleGlyLeuTrpProTyrHisA 477941 : CAGTATTACAACTTCCACAAGAACCTATTAACGGCAATAGGACTTTGGCCGTACCATA : 477998 24 : rgThrMetLeuValGlnLeuGlnSerSerValPheSerPheMetLeuIleSerTyrIl : 42 .!|||! !!! ! !||||||!:!|||:!! !!||||||!!:! !.!!|||!:!:! snThrLysPheArgThrLeuGlnAsnSerIleValSerPheIleArgPheSerPheVa 477999 : ACACGAAATTCAGAACATTACAAAACAGTATTGTCAGCTTCATTCGCTTTTCGTTTGT : 478055 43 : eIleValGlnLeuThr : 47 ! !||||||:!!:!! lAlaValGlnValSer 478056 : AGCTGTACAGGTATCT : 478072 vulgar: CbirOr404 3 47 . KQ414815.1 477940 478072 + 110 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 477941 478072 110 + . gene_id 1 ; sequence CbirOr404 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 477941 478072 . + . KQ414815.1 exonerate:protein2genome:local exon 477941 478072 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 477941 478072 110 + . alignment_id 1 ; Query CbirOr404 ; Align 477941 4 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr404 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 130 -> 211 Target range: 485686 -> 485926 131 : LeuIleIlePheThrLeuValProIleLeuProArgIlePheGlyIleLeuPheLeuV : 150 |||:!!:!:.!.! !|||! ! !.!! ! !!!!|||.!.! !||||||.!!! !: LeuLeuValLeuIleLeuGlyIlePheAsnAsnSerIleLeuAspIleLeuIleProL 485687 : TTACTTGTGCTGATTCTTGGTATATTTAACAACAGTATTCTGGACATTTTGATTCCTT : 485744 151 : alAsnLysSerGluProTyrArgTyrIleTyrMetLysThrGluTyrPheIleAspGl : 169 !!||| ! !!!...||| ||| ||| !!!:!!.:!!|||:!!|||:!!||||| euAsnTyrThrArgPro---ArgThrIleProIleAsnSerGluHisPheValAspGl 485745 : TGAATTACACTCGTCCG---CGGACGATTCCTATAAACTCGGAACATTTTGTCGATCA : 485798 170 : nGluLysTyrPheTyrPheIleLeuLeuHisLeuTyrAlaValGlnTyrIleGlyGly : 188 |:!!|||||||||||| !||| ! !|||:!! ! ! !! !||||||!.! nGlnLysTyrPheTyrProIleAlaAlaHisValValLeuPheValIleIleGlyAla 485799 : GCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCTCTTCGTCATTATTGGCGCG : 485855 189 : GlyThrLeuLeuGlySerGlyIleValLeuThrGlyTyrPheThrTyrPheCysGlyL : 208 !..!||||||.!!::: |||:::::: ..! .!. !:!! !||||||| IleValLeuLeuSerThrGluIleLeuIleMetAlaIleIleGlnHisThrCysGlyL 485856 : ATAGTATTACTCAGCaccgaaatattaattatggCGATAATACAGCACACCTGTGGTT : 485915 209 : euPheAsnIle : 211 ||!:!!..||| euTyrThrIle 485916 : TGTATACAATC : 485926 vulgar: CbirOr404 130 211 . KQ414815.1 485686 485926 + 107 M 25 75 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485687 485926 107 + . gene_id 2 ; sequence CbirOr404 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485687 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485687 485926 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 485687 485926 107 + . alignment_id 2 ; Query CbirOr404 ; Align 485687 131 75 ; Align 485762 157 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr419 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 119 -> 214 Target range: 457129 -> 457411 120 : LysArgTyrThrThrValLeuIleLeuLeuValMetCysSerLeuPheLeuLeuProP : 139 |||::: ::!:!!:!!! !:!!! !..! |||.!! !.!.:!!:!! !! LysLysLysProSerMetIleThrValSerThrTyrCysGlyAlaLeuValIleThrT 457130 : aaaaaaaaaccttcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCA : 457187 140 : heLeuProLeuSerThrArgIleLeuGlyThrPheLeuHisLeuAsnGluSerGlnGl : 158 |||! !|||! ! !!! !:!!|||! !! ! ! :!!! ||||||||||||!::! hrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgPr 457188 : CGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCC : 457244 159 : nTyrArgLysLeuTyrIleValThrGluTyrPheValAspGlnGlnLysAsnPheTyr : 177 ! ! :!!||||||:!!..!.!!|||||||||||||||..!:!!||| !!.!.:!! oCys---GluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHis 457245 : CTGT---GAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCAT : 457298 178 : PheIleLeuLeuHisMetTyrAlaAlaThrTyrIleGluMetThrAlaLeuIleGlyP : 197 !:!|||:!! !|||!!: !.!!..! ! |||! ! |||.!!|||! !!.! TyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaA 457299 : TATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTA : 457358 198 : roGlyAlaLeuIleIleGlyTyrLeuLysHisIleCysGlyMetPheLysIle : 214 !! !:!!|||:!!||| ! !!:!! !|||:!!||||||:!!||||||:!! snGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457359 : ACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr419 119 214 . KQ414815.1 457129 457411 + 130 M 40 120 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457130 457411 130 + . gene_id 1 ; sequence CbirOr419 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457130 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457130 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457130 457411 130 + . alignment_id 1 ; Query CbirOr419 ; Align 457130 120 120 ; Align 457250 161 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr419 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 125 -> 214 Target range: 481971 -> 482235 126 : LeuIleLeuLeuValMetCysSerLeuPheLeuLeuProPheLeuProLeuSerThrA : 145 ::: !|||:!! |||:!!!!.:!!||| !.!.! !! !:!!|||!:! IleThrAlaLeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerP 481972 : attacagcGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTT : 482029 146 : rgIleLeuGlyThrPheLeuHisLeuAsnGluSerGlnGlnTyrArgLysLeuTyrIl : 164 !:!!|||! !..!.!!:!!! !|||||||||!!!!:: !:!! :!!!!! :! heValLeuAspValIleValProLeuAsnGluThrArgThrHis---GlnPheProVa 482030 : TCGTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCAC---CAATTTCCAGT : 482083 165 : eValThrGluTyrPheValAspGlnGlnLysAsnPheTyrPheIleLeuLeuHisMet : 183 ! !! !|||||||||:!!|||||||||||| !!! !|||||| !!!!|||..! lSerMetGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGln 482084 : ATCAATGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAG : 482140 184 : TyrAlaAlaThrTyrIleGluMetThrAlaLeuIleGlyProGlyAlaLeuIleIleG : 203 !:: !:!! ! !:!!! ||| !:!!:!!||| !! !.!!||||||:!! TrpPheSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValM 482141 : TGGTTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTA : 482200 204 : lyTyrLeuLysHisIleCysGlyMetPheLysIle : 214 !!::|||:!!||| !....!!:!!|||! :!! etTrpLeuGluHisAlaAlaSerLeuPheThrLeu 482201 : TGTGGCTTGAACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: CbirOr419 125 214 . KQ414815.1 481971 482235 + 108 M 34 102 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481972 482235 108 + . gene_id 2 ; sequence CbirOr419 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481972 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481972 482235 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 481972 482235 108 + . alignment_id 2 ; Query CbirOr419 ; Align 481972 126 102 ; Align 482074 161 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr419 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 6 -> 223 Target range: 447032 -> 448322 7 : GlnTyrPheAsnTrpHisArgIleLeuLeuLeuAlaValGlyLeuTrpProTyrGluA : 26 :!!|||!:!!:! :!!!:! |||||| ! !||||||||||||||||||:!!| GluTyrTyrSerLeuAsnGlnGlnLeuLeuThrLeuValGlyLeuTrpProTyrLysA 447033 : GAGTACTATAGCCTCAATCAACAGCTTTTGACGTTGGTCGGACTGTGGCCGTACAAGA : 447090 27 : rgSerAsnPheValLysPheGlnCysTyrPhePheLeuAlaIleProThrSerPheIl : 45 ||! !!!.!!...! .!! ! ! !!:!.!.||| !.!! !! !!!! !.! rgTyrLysLeuThrPheLeuTyrAsnThrTyrMetLeuPhePhePheIleThrAlaPh 447091 : GGTACAAGTTGACATTCCTTTACAATACCTACATGCTGTTCTTCTTCATCACCGCTTT : 447147 46 : eIleValMetLeuThrProPheLeuThrThrGluCysThrPheThrPheIleIleLys : 64 !.!!:!!..!:!! ! !!!.!!!..! !:!!! !! !||||||:!: ! ! ePheLeuGlnValLeuValLeuPheVal***GlnLeu***CysThrPheValCysTyr 447148 : CTTTCTTCAGGTACTTGTTTTATTCGTGTAACAATTGTGATGCACTTTTGTGTGTTAC : 447204 65 : ValSerAlaIleValPheValPheMetValCysMetValThrHisAsnSerPheTrpV : 84 |||! !! !!!: !! !!:!! :!: !|||! !! ! ! !.!. ! | ValPheGluMetPheValIleLysValTyrCysLysPheLeuMetIleLeuLeuArgV 447205 : GTGTTTGAAATGTTTGTCATTAAGGTCTATTGTAAATTTCTGATGATACTCCTAAGAG : 447264 85 : alAsnAlaCysThrValArgCysLeuLeuGluLysLeuGlnHisMetCysAsnGluLe : 103 ||! ! :::||| ! !||| !!!.! ||| !||||| alIleLeuArg***AsnPheGluMetLeuProValLeuLeuGlnAsnCysPheGluLe 447265 : TTATTTtgagatgaaattttgaaatgttgCCGGTGTTATTGCAAAACTGTTTCGAGCT : 447321 104 : uLysAspGlnAsnGlu{Il} >>>> Target Intron 1 >>>> {e}AlaIle : 111 |||| ! !|||...{||} 642 bp {|} ||| uLysIleGlyAsnSer{Il}-- ++{e}PheIle 447322 : TAAGATTGGGAATAGT{AT}tg.........................ag{a}tttatt : 447987 112 : IleLysLysTyrGlyAsnThrAlaLysArgTyrThrThrValLeuIleLeuLeuValM : 131 ...:::...||| ...::: ::!:!! !! AlaLeuAsnPheAsnAsnPheIleIlePheLeuIlePheThrIleSerValValPheA 447988 : gctttaaatttcaacaattttattatctttctcattttcacaatttcagtGGTGTTTG : 448047 132 : etCysSerLeuPheLeuLeuProPheLeuProLeuSerThrArgIleLeuGlyThrPh : 150 ! ||||||.!! !!!! !!!!.:!! !!!! !..!......||| .. laLeuSerLeuIleSerPheThrLeuValGluPheValValHisPheLeuAspIleLe 448048 : CCTTGTCTTTAATTAGCTTTACCTTGGTTGAGTTCGTGGTAcattttctcgatatttt : 448104 151 : eLeuHisLeuAsnGluSerGlnGlnTyrArgLysLeuTyrIleValThrGluTyrPhe : 169 .:!!! :!!|||! !||| !!:!:!!..! !! !!:!:!!:!! :!!! !||| uMetProMetAsnValSerThrArgHisGluLeuProPheLeuIle---GlnCysPhe 448105 : aATGCCAATGAACGTATCTACACGGCACGAGCTACCCTTCCTAATT---CAATGTTTC : 448158 170 : ValAspGlnGlnLysAsnPheTyrPheIleLeuLeuHisMetTyrAlaAlaThrTyrI : 189 !||||||.!.||| !|||:!!!:!||||||:!! !:!! !!.! !||| !: CysAspGlnAspLysPhePheHisTyrIleLeuValPheLeuIleValLeuThrIleL 448159 : TGTGATCAAGATAAATTCTTCCACTATATATTAGTTTTCTTGATCGTTCTCACTATTT : 448218 190 : leGluMetThrAlaLeuIleGlyProGlyAlaLeuIleIleGlyTyrLeuLysHisIl : 208 !:! !:!!.!:!!:!!!.! !! !.!! ! !:!: !!:! !:!!||| euGlyGlySerValValLeuAlaThrThrThrThrTyrLeuIlePheSerGlnHisCy 448219 : TGGGTGGAAGTGTGGTATTAGCCACTACAACGACTTACTTGATATTCAGTCAACATTG : 448275 209 : eCysGlyMetPheLysIleAlaSerTyrArgIleGluGlnAlaMet : 223 !||||||:!!||||||||||||.!!!! ..!||| ! |||||| sCysGlyLeuPheLysIleAlaGly***GluIleMetThrAlaMet 448276 : TTGTGGATTGTTCAAAATTGCAGGGTAAGAAATTATGACTGCTATG : 448322 vulgar: CbirOr419 6 223 . KQ414815.1 447032 448322 + 105 M 102 306 S 0 2 5 0 2 I 0 638 3 0 2 S 1 1 M 56 168 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 447033 448322 105 + . gene_id 3 ; sequence CbirOr419 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 447033 447340 . + . KQ414815.1 exonerate:protein2genome:local exon 447033 447340 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 447341 447342 . + . intron_id 1 ; splice_site "TG" KQ414815.1 exonerate:protein2genome:local intron 447341 447982 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 447981 447982 . + . intron_id 0 ; splice_site "ag" KQ414815.1 exonerate:protein2genome:local cds 447983 448322 . + . KQ414815.1 exonerate:protein2genome:local exon 447983 448322 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 447033 448322 105 + . alignment_id 3 ; Query CbirOr419 ; Align 447033 7 306 ; Align 447984 110 168 ; Align 448152 167 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr419 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 272 -> 326 Target range: 479360 -> 479587 273 : MetPheAsnValLeuCysLeuSerLeuAsnLeuTyrCys >>>> Target Intro : 286 :!!||| !:!! !! ||||||:!!||||||||| !! 65 bp LeuPheAlaIleThrSerLeuSerIleAsnLeuTyrArg++ 479361 : TTGTTCGCTATCACCTCGTTGAGCATTAATTTGTATCGTgt................. : 479402 287 : n 1 >>>> IlePheGlnAlaValSerPheLysAspAsnIleGluGluPheLeuIle : 301 |||! |||||||||!!! ! !|||.!.||||||||| |||||| ++IleSerGlnAlaValThrHisLeuAspGluIleGluGluThrLeuIle 479403 : ........agATATCGCAAGCAGTGACTCATTTAGACGAAATCGAAGAAACATTGATC : 479510 302 : HisPheThrLeuAlaThrGlyIlePheLeuTyrSerPheValAlaAsnTyrAlaGlyG : 321 .!.! !!!!|||:!!||| .!. !|||! !!:! ! !:!!||| ! | ThrLeuMetPheAlaSerGlyGluLeuSerTyrMetTyrTyrLeuHisTyrIleLeuG 479511 : ACACTGATGTTTGCGTCTGGCGAGCTAAGTTACATGTACTACTTGCATTATATActtc : 479570 322 : lnGluIleIleAspHis : 326 ||:::|||||||||||| lnLysIleIleAspHis 479571 : agaaaataattgatcaC : 479587 vulgar: CbirOr419 272 326 . KQ414815.1 479360 479587 + 104 M 13 39 5 0 2 I 0 61 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 479361 479587 104 + . gene_id 4 ; sequence CbirOr419 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 479361 479399 . + . KQ414815.1 exonerate:protein2genome:local exon 479361 479399 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 479400 479401 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 479400 479464 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 479463 479464 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 479465 479587 . + . KQ414815.1 exonerate:protein2genome:local exon 479465 479587 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 479361 479587 104 + . alignment_id 4 ; Query CbirOr419 ; Align 479361 273 39 ; Align 479465 286 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr419 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 122 -> 214 Target range: 485653 -> 485926 123 : ThrThrValLeuIleLeuLeuValMetCysSerLeuPheLeuLeuProPheLeuProL : 142 !.!!:!:!!:!! !:!!:!!:!! ||||||.!!:!!||| !.!! ! !! AsnSerIleIleAlaValIleIleGlyProSerLeuLeuValLeuIleLeuGlyIleP 485654 : AACAGTATTATTGCAGTAATTATCGGTCCATCGTTACTTGTGCTGATTCTTGGTATAT : 485711 143 : euSerThrArgIleLeuGlyThrPheLeuHisLeuAsnGluSerGlnGlnTyrArgLy : 161 !!!:!!.!!!!||||||! !! !!!.:!!! !|||||| ! !!!!::! ! |||! heAsnAsnSerIleLeuAspIleLeuIleProLeuAsnTyrThrArgPro---ArgTh 485712 : TTAACAACAGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCG---CGGAC : 485765 162 : sLeuTyrIleValThrGluTyrPheValAspGlnGlnLysAsnPheTyrPheIleLeu : 180 !:!! !||| !:!!|||:!!|||||||||||||||||| !!|||||| !||| ! rIleProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAla 485766 : GATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCA : 485822 181 : LeuHisMetTyrAlaAlaThrTyrIleGluMetThrAlaLeuIleGlyProGlyAlaL : 200 !|||:!: ! ! !..! !|||! !! !!.!|||:!!.!! | AlaHisValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleL 485823 : GCACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatat : 485882 201 : euIleIleGlyTyrLeuLysHisIleCysGlyMetPheLysIle : 214 |||||:::..! :!!:!!|||! !||||||:!!!:!! !||| euIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIle 485883 : taattatggCGATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr419 122 214 . KQ414815.1 485653 485926 + 104 M 36 108 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485654 485926 104 + . gene_id 5 ; sequence CbirOr419 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485654 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485654 485926 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 485654 485926 104 + . alignment_id 5 ; Query CbirOr419 ; Align 485654 123 108 ; Align 485762 160 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr419 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 164 -> 217 Target range: 478635 -> 478794 165 : ValThrGluTyrPheValAspGlnGlnLysAsnPheTyrPheIleLeuLeuHisMetT : 184 ..!||||||||||||:!!|||::::::||| ||| ||||||::: |||:!!| ThrThrGluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValT 478636 : ACCACGGAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGT : 478693 185 : yrAlaAlaThrTyrIleGluMetThrAlaLeuIleGlyProGlyAlaLeuIleIleGl : 203 || !:!! ! !!:.!. |||!.!! !:!!!.! !!! !:!!! !:!:||| yrLeuSerLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMe 478694 : ACCTGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTAT : 478750 204 : yTyrLeuLysHisIleCysGlyMetPheLysIleAlaSerTyr : 217 !!:::!! !|||! ! !|||:!!!:!!!.||| !!!!||| tTrpMetValHisThrIleGlyLeuTyrAsnIleIleArgTyr 478751 : GTGGATGGTGCATACTATCGGCTTGTATAATATCATAAGGTAT : 478794 vulgar: CbirOr419 164 217 . KQ414815.1 478635 478794 + 100 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478636 478794 100 + . gene_id 6 ; sequence CbirOr419 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478636 478794 . + . KQ414815.1 exonerate:protein2genome:local exon 478636 478794 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478636 478794 100 + . alignment_id 6 ; Query CbirOr419 ; Align 478636 165 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr398PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 76 -> 250 Target range: 475310 -> 476106 77 : ValLysArgLeuMetGluHisLeuGlnTyrValCysSerGluLeuLysAspGluAsnG : 96 ||||||!:!||||||||| ! :!!:!!|||! !!! ! ! !:!!!!.||||||...| ValLysGlnLeuMetGluLysIleLysTyrAspTrpMetThrIleAsnAspGluGlyG 475311 : GTGAAGCAGTTAATGGAGAAGATAAAGTACGATTGGATGACGATCAACGACGAGGGAG : 475368 97 : luIleAlaIleIleLysArgTyrGlyHisIleAlaLysTrpIleThrIleGlyLeuTh : 115 ||:!! |||:::|||... ..!:!!! !!.!||| ! .!!|||||| !!!!.! luLeuArgIleLeuLysAsnAsnAlaTyrArgGlyLysGlyPheThrIleIlePheAl 475369 : AGCTTagaatcttgaaaaataacgCTTACAGAGGAAAAGGATTCACGATCATTTTCGC : 475425 116 : r{L} >>>> Target Intron 1 >>>> {eu}SerAlaMetCysValLeuIle : 123 !{|} 85 bp {||} !!.! ..!:!!.!! a{L}++ ++{eu}LeuValTyrProThrIlePhe 475426 : A{T}gt.........................ag{TA}CTGGTATACCCAACAATATTC : 475534 124 : IlePheThrLeuLeuProIleLeuProArgIlePheArgIlePhePheValValAsnL : 143 ! !.!.! !||||||! !.!!! ! !!!:!|||.!! ! !!!.!!. !:!!|||: ThrMetIleLeuLeuLeuPheSerSerLysIleLeuAspSerLeuLeuProLeuAsnG 475535 : ACCATGATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTACCCCTGAACG : 475594 144 : ysSerGluProPheArgAsnValTyrIleThrGluTyrPheValAspGluGluLysTy : 162 !!|||...||| ! !!::!:!! |||||||||::::::|||:!!||||| luSerArgProSerTrpSerLeuIleArgIleGluTyrPheIleAsnGluGlnLysTy 475595 : AGTCTCGTCCTAGCTGGTCTCTGAtacgaatagaatatttcataaacGAACAGAAATA : 475651 163 : rPheTyrPheIleLeuLeuHisMetTyrAlaThrGlnTyrIleAlaGlyGlyThrLeu : 181 |||||||.!.! !:!!:!!:!!..! !!.!||| !:!: !||| !|||! ! rPheTyrLeuSerValIleTyrGlnThrValThrIleLeuLeuPheGlyThrThrTyr 475652 : CTTTTATCTGAGCGTGATCTATCAGACTGTAACGATCCTTCTGTTTGGTACCACGTAC : 475708 182 : LeuAlaAlaGlyIleValValMetGlyTyrLeuThrCysValCysGlyLeuPheAsnI : 201 :!!|||.!!! ! !:!! !!! !!::||| ! ! ! ...||||||...| ValAlaThrGluAlaIlePheThrMetTrpLeuGlnHisCysIleSerLeuPheGluI 475709 : GTAGCAACTGAAGCAATATTTACCATGTGGTTGCAACATTGCATaagtttatttgaaa : 475768 202 : leAla{Se} >>>> Target Intron 2 >>>> {r}TyrArgIleGluGlnAl : 209 ||...{||} 183 bp {|}||||||||||||:!! leVal{Se}++ ++{r}TyrArgIleGluLysLe 475769 : ttgtt{ag}gt.........................ag{t}TATCGTATTGAAAAACT : 475975 210 : aMetLeuLeuAsnSerAspGlu<-><->ValThrAsnArgLysAsnLysArgGluIle : 226 !!!::!!! ! !!:!! !||| |||:!!.!.!:!::: ! |||.!.! ! uIleIleGlnCysAsnAlaGluProTyrValSerGlnLysArgLeuHisArgAsnSer 475976 : GATTATACAGTGCAACGCTGAGCCGTACGTTTCGCAAAAACGTTTGCACAGAAACAGC : 476032 227 : AspLysLysLeuSerHisAlaValValMetHisArgThrAlaLeuGluPheThrAspP : 246 |||! |||! !:!!||||||||||||||||||! !!.!|||:!!!!...!..!! ArgLysIleLeuIleAsnAlaValValMetHisArgArgValLeuGlnLeuValSerC 476033 : AGGAAGATTCTAATTAATGCTGTGGTTATGCACAGAAGAGTATTACAGTTGGTATCTT : 476092 247 : hePheLeuTyrLys : 250 ! ! :::||| ysValArgPheLys 476093 : GCGTGaggtttaaa : 476106 vulgar: CbirOr398PSE 76 250 . KQ414815.1 475310 476106 + 172 M 39 117 S 0 1 5 0 2 I 0 81 3 0 2 S 1 2 M 86 258 S 0 2 5 0 2 I 0 179 3 0 2 S 1 1 M 13 39 G 0 6 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475311 476106 172 + . gene_id 1 ; sequence CbirOr398PSE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 475311 475428 . + . KQ414815.1 exonerate:protein2genome:local exon 475311 475428 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 475429 475430 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 475429 475513 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 475512 475513 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 475514 475775 . + . KQ414815.1 exonerate:protein2genome:local exon 475514 475775 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 475776 475777 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 475776 475958 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 475957 475958 . + . intron_id 1 ; splice_site "ag" KQ414815.1 exonerate:protein2genome:local cds 475959 476106 . + . KQ414815.1 exonerate:protein2genome:local exon 475959 476106 . + . insertions 6 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475311 476106 172 + . alignment_id 1 ; Query CbirOr398PSE ; Align 475311 77 117 ; Align 475516 117 258 ; Align 475960 204 39 ; Align 476005 217 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr398PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 152 -> 204 Target range: 478638 -> 478794 153 : ThrGluTyrPheValAspGluGluLysTyrPheTyrPheIleLeuLeuHisMetTyrA : 172 ||||||||||||:!!||||||:::||||||||| ||||||::: |||:!!||| ThrGluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValTyrL 478639 : ACGGAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGTACC : 478696 173 : laThrGlnTyrIleAlaGlyGlyThrLeuLeuAlaAlaGlyIleValValMetGlyTy : 191 !:!! ! !!: !!.! !..!! !:!!|||.!!! ! !|||!!: !!: euSerLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMetTr 478697 : TGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTATGTG : 478753 192 : rLeuThrCysValCysGlyLeuPheAsnIleAlaSerTyr : 204 ::!!..! !..! !||||||!:!|||||| !!!!||| pMetValHisThrIleGlyLeuTyrAsnIleIleArgTyr 478754 : GATGGTGCATACTATCGGCTTGTATAATATCATAAGGTAT : 478794 vulgar: CbirOr398PSE 152 204 . KQ414815.1 478638 478794 + 101 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478639 478794 101 + . gene_id 2 ; sequence CbirOr398PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478639 478794 . + . KQ414815.1 exonerate:protein2genome:local exon 478639 478794 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478639 478794 101 + . alignment_id 2 ; Query CbirOr398PSE ; Align 478639 153 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr425PC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 127 -> 213 Target range: 448040 -> 448298 128 : IleLeuValCysTyrLeuIleSerPheAsnMetLeuProValValProTyrPheLeuA : 147 :!:!!!!.!! ! !||||||||||||!.!:!!:!! ! !!||| !:::||||||| ValPheAlaLeuSerLeuIleSerPheThrLeuValGluPheValValHisPheLeuA 448041 : GTGTTTGCCTTGTCTTTAATTAGCTTTACCTTGGTTGAGTTCGTGGTAcattttctcg : 448098 148 : spIleIleLeuArgLeuAsnLysSerAsnLeuProMetGlnPheIleLeuThrGluTy : 166 |||||::::!!! !:!!||| !|||!..! !! ! !! ! !.!!|||! !:!!! spIleLeuMetProMetAsnValSerThrArgHisGluLeuProPheLeuIleGlnCy 448099 : atattttaATGCCAATGAACGTATCTACACGGCACGAGCTACCCTTCCTAATTCAATG : 448155 167 : rPheValAspGlnGluLysTyrLeuTyrLeuIleLeuLeuHisThrAsnValAlaPhe : 185 !||| !||||||!!:|||!:!!!!:!!! !||||||:!! ! !! !||| ! ! sPheCysAspGlnAspLysPhePheHisTyrIleLeuValPheLeuIleValLeuThr 448156 : TTTCTGTGATCAAGATAAATTCTTCCACTATATATTAGTTTTCTTGATCGTTCTCACT : 448212 186 : SerIleArgGlyThrValPheAlaAlaIleGlyLeuMetLeuLeuLeuTyrValGluH : 205 ! !:!: !!|||!:!||| ! !|||! ! ! !! ! !|||:!!!:! !:!!| IleLeuGlyGlySerValValLeuAlaThrThrThrThrTyrLeuIlePheSerGlnH 448213 : ATTTTGGGTGGAAGTGTGGTATTAGCCACTACAACGACTTACTTGATATTCAGTCAAC : 448272 206 : isGlyCysGlyIlePheGlnLeuAla : 213 || !!||||||:!:|||:!!:!!||| isCysCysGlyLeuPheLysIleAla 448273 : ATTGTTGTGGATTGTTCAAAATTGCA : 448298 vulgar: CbirOr425PC 127 213 . KQ414815.1 448040 448298 + 127 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448041 448298 127 + . gene_id 1 ; sequence CbirOr425PC ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448041 448298 . + . KQ414815.1 exonerate:protein2genome:local exon 448041 448298 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448041 448298 127 + . alignment_id 1 ; Query CbirOr425PC ; Align 448041 128 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr425PC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 143 -> 212 Target range: 482028 -> 482235 144 : TyrPheLeuAspIleIleLeuArgLeuAsnLysSerAsnLeuProMetGlnPheIleL : 163 !:! !!||||||:!!|||:!!! !||||||:!!!!!..! !! !... :!!! PheValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValS 482029 : TTCGTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTAT : 482086 164 : euThrGluTyrPheValAspGlnGluLysTyrLeuTyrLeuIleLeuLeuHisThrAs : 182 !! !|||||||||:!!||||||:!!||||||! ! !!!!||| !!!!||| ! erMetGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTr 482087 : CAATGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTG : 482143 183 : nValAlaPheSerIleArgGlyThrValPheAlaAlaIleGlyLeuMetLeuLeuLeu : 201 !!:!!||| !:!! !!.!|||:!!.!!!.!!.!|||! ! !:!!:!!:!!:!! pPheSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMet 482144 : GTTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATG : 482200 202 : TyrValGluHisGlyCysGlyIlePheGlnLeu : 212 !:::!!||||||!.!....!!:!:||| ||| TrpLeuGluHisAlaAlaSerLeuPheThrLeu 482201 : TGGCTTGAACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: CbirOr425PC 143 212 . KQ414815.1 482028 482235 + 116 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482029 482235 116 + . gene_id 2 ; sequence CbirOr425PC ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482029 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 482029 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482029 482235 116 + . alignment_id 2 ; Query CbirOr425PC ; Align 482029 144 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr425PC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 144 -> 212 Target range: 485722 -> 485926 145 : PheLeuAspIleIleLeuArgLeuAsnLysSerAsnLeuProMetGlnPheIleLeuT : 164 .!!|||||||||:!::!!! !|||||| ! !!!..!! !! !! ! !||| !: IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 165 : hrGluTyrPheValAspGlnGluLysTyrLeuTyrLeuIleLeuLeuHisThrAsnVa : 183 !!|||:!!||||||||||||:!!||||||!!!|||! !||| ! !|||..! !:! erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 184 : lAlaPheSerIleArgGlyThrValPheAlaAlaIleGlyLeuMetLeuLeuLeuTyr : 202 ! ! !!! !||| !!!.!! !|||!!. !::! :::::::::::: ! uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 203 : ValGluHisGlyCysGlyIlePheGlnLeu : 212 :!!:!!||| !||||||:!:!:! !:!! IleGlnHisThrCysGlyLeuTyrThrIle 485895 : ATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr425PC 144 212 . KQ414815.1 485722 485926 + 103 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485926 103 + . gene_id 3 ; sequence CbirOr425PC ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485926 103 + . alignment_id 3 ; Query CbirOr425PC ; Align 485723 145 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr425PC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 276 -> 323 Target range: 458534 -> 458675 277 : LeuThrAlaTyrAsnValTyrTrpTyrThrAlaProIleArgValGlnLysLeuIleL : 296 :!! ! !||| :!! |||||| !||||||:!!|||:!!||||||! !:!!| IleArgArgTyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuL 458535 : ATTCGTAGATACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCT : 458592 297 : euPheLeuIleGluArgSerMetLysSerPheAsnLeuLysValValGlyLeuLeuVa : 315 |||||:!! !|||||||||! !:! ! !::!||| :!! !|||:!!:!!:! euPheIleSerGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIl 458593 : TGTTCATATCAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCAT : 458649 316 : lAlaSerIleUnkCysPheValSer : 323 !||||||... |||...:!! eAlaSerPheGluPhePheAlaThr 458650 : TGCatccttcgaatttttcgccaCG : 458675 vulgar: CbirOr425PC 276 323 . KQ414815.1 458534 458675 + 101 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458535 458675 101 + . gene_id 4 ; sequence CbirOr425PC ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 458535 458675 . + . KQ414815.1 exonerate:protein2genome:local exon 458535 458675 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458535 458675 101 + . alignment_id 4 ; Query CbirOr425PC ; Align 458535 277 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr410PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 170 -> 229 Target range: 478635 -> 478812 171 : ThrThrGluTyrPheValAspGlnGluLysAsnPheTyrPheIlePheLeuHisLeuT : 190 |||||||||||||||:!!|||::::::||| ||| ||||||... |||:!!| ThrThrGluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValT 478636 : ACCACGGAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGT : 478693 191 : yrLeuSerHisTyrIleAlaValSerThrLeuValGlyThrGlyIleLeuIleThrGl : 209 |||||||| !!: !!.!!!!..!! !|||!.!|||! ! ! !:!:! ! yrLeuSerLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMe 478694 : ACCTGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTAT : 478750 210 : yTyrPheIleHisPheCysGlyLeuPheAsnValAlaSerTyrArgMetGlnGlnVal : 228 !!::.!.:!:||| ! !||||||!:!|||:!! !!!!|||!.!..!|||::!:!! tTrpMetValHisThrIleGlyLeuTyrAsnIleIleArgTyrAsnGlnGlnArgLeu 478751 : GTGGATGGTGCATACTATCGGCTTGTATAATATCATAAGGTATAATCAGCAAAGATTG : 478807 229 : Met : 229 !!: Ile 478808 : ATC : 478812 vulgar: CbirOr410PI 170 229 . KQ414815.1 478635 478812 + 120 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478636 478812 120 + . gene_id 1 ; sequence CbirOr410PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478636 478812 . + . KQ414815.1 exonerate:protein2genome:local exon 478636 478812 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478636 478812 120 + . alignment_id 1 ; Query CbirOr410PI ; Align 478636 171 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr410PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 120 -> 220 Target range: 460943 -> 461240 121 : TyrGlyTyrIleAlaLysCysValAlaIleGlyPheIlePheLeuAlaIleCysGlyI : 140 |||||| ! ::: ... |||::: :!!!.!.!!! !!: TyrGlyValAspLeuIleAspIlePhePheValPheLeuAlaIleValPheLeuCysL 460944 : TATGGTGTAGATttaattgacatttttttcgtctttttaGCAATTGTATTCTTATGCC : 461001 141 : leIleThrPheSerLeuLeuProIleLeuProGlnIlePheGlyIlePheTyrLeuVa : 159 !!|||! !.!!:!!|||:!!||| !||||||!:!||||||!.!||| ! ! ! euIleMetIleAlaLeuIleProTyrLeuProArgIlePheAlaIleValThrHisGl 461002 : TAATAATGATCGCGTTAATTCCGTATTTGCCGCGGATCTTCGCGATTGTGACGCATCA : 461058 160 : lAsnLysSerGluProTyrArgAsnIleTyrIleThrThrGluTyrPheValAspGln : 178 !|||!:!!!!...|||! !:! ||| |||! !..!|||||| !||||||!!. nAsnArgThrArgProLeuLys---IleProIleIleValGluTyrHisValAspHis 461059 : GAACAGAACTCGTCCGTTGAAA---ATACCGATCATCGTGGAGTATCACGTGGATCAT : 461112 179 : GluLysAsnPheTyrPheIlePheLeuHisLeuTyrLeuSerHisTyrIleAlaValS : 198 .!.:!! !!||| !!.!.|||.!.||||||:!! !!!!!!!!|||!:!|||!.! !!! AsnGluTyrPheAspLeuIleIleLeuHisIleAsnPheCysHisPheIleGlyPheC 461113 : AACGAGTACTTCGATCTGATCATATTACACATTAACTTCTGCCACTTTATCGGCTTCT : 461172 199 : erThrLeuValGlyThrGlyIleLeuIleThrGlyTyrPheIleHisPheCysGlyLe : 217 !!..!:!!:!!..!.!!! !:!: !! ! !! ! ! ! !|||.!!|||..!|| ysValValIleSerAlaGluValThrAsnLeuValLeuAlaLysHisIleCysSerLe 461173 : GCGTTGTTATATCTGCTGAAGTGACAAATTTGGTACTTGCGAAACACATTTGCTCGTT : 461229 218 : uPheAsnVal : 220 ||||:!!:!! uPheAspLeu 461230 : GTTCGATCTT : 461240 vulgar: CbirOr410PI 120 220 . KQ414815.1 460943 461240 + 114 M 46 138 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 460944 461240 114 + . gene_id 2 ; sequence CbirOr410PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 460944 461240 . + . KQ414815.1 exonerate:protein2genome:local exon 460944 461240 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 460944 461240 114 + . alignment_id 2 ; Query CbirOr410PI ; Align 460944 121 138 ; Align 461082 168 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr410PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 165 -> 220 Target range: 485761 -> 485926 166 : ArgAsnIleTyrIleThrThrGluTyrPheValAspGlnGluLysAsnPheTyrPheI : 185 |||!..||| !|||!.!:!!|||:!!||||||||||||:!!||| !!|||||| !| ArgThrIleProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProI 485762 : CGGACGATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTA : 485819 186 : lePheLeuHisLeuTyrLeuSerHisTyrIleAlaValSerThrLeuValGlyThrGl : 204 || !|||:!! !|||! ! ! !|||!.!!.!! !..!|||:!!.!!||| leAlaAlaHisValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGl 485820 : TTGCAGCACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccga : 485876 205 : yIleLeuIleThrGlyTyrPheIleHisPheCysGlyLeuPheAsnVal : 220 ||||||||| ..! .!. ||| !|||||||||!:!!..:!! uIleLeuIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIle 485877 : aatattaattatggCGATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr410PI 165 220 . KQ414815.1 485761 485926 + 108 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485762 485926 108 + . gene_id 3 ; sequence CbirOr410PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485762 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485762 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485762 485926 108 + . alignment_id 3 ; Query CbirOr410PI ; Align 485762 166 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr413PIC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 137 -> 222 Target range: 461009 -> 461261 138 : IleMetLeuLeuProPheTrpProArgIleLeuThrIleValSerLeuIleAsnGluS : 157 ||| !|||:!!|||!:!! !|||||||||!!!.!!||||||!!!! ! |||..!! IleAlaLeuIleProTyrLeuProArgIlePheAlaIleValThrHisGlnAsnArgT 461010 : ATCGCGTTAATTCCGTATTTGCCGCGGATCTTCGCGATTGTGACGCATCAGAACAGAA : 461067 158 : erGlnThrTyrAlaLysValGlnIleThrThrGluTyrPheIleAsnGlnGluLysTy : 176 !!!:: !! !|||:!!! !|||! !..!|||||| !:!::!!!!..!.:!!|| hrArgPro---LeuLysIleProIleIleValGluTyrHisValAspHisAsnGluTy 461068 : CTCGTCCG---TTGAAAATACCGATCATCGTGGAGTATCACGTGGATCATAACGAGTA : 461121 177 : rLeuTyrLeuIleLeuLeuHisLeuAspThrValLeuTrpIleGlySerSerThrLeu : 195 |!!! !!||||||:!!||||||:!!:!! ! !! !!::||||||! !!!!..!:!! rPheAspLeuIleIleLeuHisIleAsnPheCysHisPheIleGlyPheCysValVal 461122 : CTTCGATCTGATCATATTACACATTAACTTCTGCCACTTTATCGGCTTCTGCGTTGTT : 461178 196 : MetGlyIleGlyLeuLeuLeuLeuGlyTyrCysGlnHisMetCysGlyIlePheSerI : 215 !!:..! !! !:!! ! !|||! ! !...:!!|||!!:|||..!:!:|||..!: IleSerAlaGluValThrAsnLeuValLeuAlaLysHisIleCysSerLeuPheAspL 461179 : ATATCTGCTGAAGTGACAAATTTGGTACTTGCGAAACACATTTGCTCGTTGTTCGATC : 461238 216 : leAlaArgIlePheLysAsnMet : 222 !!!.!||| ||| :::::: euValArg***PheLeuHisLeu 461239 : TTGTCAggtaatttttacattta : 461261 vulgar: CbirOr413PIC 137 222 . KQ414815.1 461009 461261 + 114 M 22 66 G 1 0 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 461010 461261 114 + . gene_id 1 ; sequence CbirOr413PIC ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 461010 461261 . + . KQ414815.1 exonerate:protein2genome:local exon 461010 461261 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 461010 461261 114 + . alignment_id 1 ; Query CbirOr413PIC ; Align 461010 138 66 ; Align 461076 161 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr400 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 335 -> 395 Target range: 476709 -> 476964 336 : TyrAsnValValTrpTyrThrAlaProValCysValGlnLysLeuIleLeuPheLeuL : 355 |||||| !! !|||||||||||||||:!!! :::|||||||||:::......:::: TyrAsnSerGluTrpTyrThrAlaProLeuSerIleGlnLysLeuLeuPheLeuIleI 476710 : TACAACTCTGAATGGTACACAGCGCCGTTATCcattcaaaaattattatttcttataa : 476767 356 : euGlnArgSerSerLysProTyrGlyLeuLysPheGlyGlyLeuTyrIleThrSerLe : 374 :! !|||!!!!!!|||||| ! !! !||| ! ! !:!!|||! !.!!|||:! leLeuArgThrThrLysProProIleSerLysAlaValPheValTyrThrAlaSerMe 476768 : tATTACGAACAACGAAACCACCCATTTCGAAGGCAGTGTTCGTATATACTGCATCGAT : 476824 375 : uGluSerPheAlaSer >>>> Target Intron 1 >>>> IleSerThrAlaS : 384 !|||||||||.!! ! 75 bp :!: !! !:!!| tGluSerPheThrVal++ ++LeuValLysSerS 476825 : GGAAAGTTTCACGGTGgt.........................agCTGGTAAAATCAT : 476929 385 : erMetSerTyrPheThrValMetTyrSerIleGln : 395 ||:!!|||||||||! !|||!!:|||||||||||| erValSerTyrPheMetValIleTyrSerIleGln 476930 : CAGTGTCTTATTTCATGGTGATATACTCTATCCag : 476964 vulgar: CbirOr400 335 395 . KQ414815.1 476709 476964 + 131 M 44 132 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 476710 476964 131 + . gene_id 1 ; sequence CbirOr400 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 476710 476841 . + . KQ414815.1 exonerate:protein2genome:local exon 476710 476841 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 476842 476843 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 476842 476916 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 476915 476916 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 476917 476964 . + . KQ414815.1 exonerate:protein2genome:local exon 476917 476964 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 476710 476964 131 + . alignment_id 1 ; Query CbirOr400 ; Align 476710 336 132 ; Align 476917 380 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr400 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 157 -> 228 Target range: 478602 -> 478815 158 : LysSerGluSerHisHisArgAsnThrTyrIleMetThrGluTyrPheValAspGlnG : 177 |||||| ...::: ......::: !! ||||||||||||:!!|||:::: LysSerTyrGlyAsnPheGluThrSerMetGlyThrThrGluTyrPheIleAspGluL 478603 : AAATcgtatggaaattttgaaacatcaATGGGCACCACGGAATACTTCATTGacgaga : 478660 178 : luLysHisPheTyrPheIleLeuLeuHisLeuTyrSerAlaLeuPheIleAlaValAl : 196 ::|||:::||| ||||||::: |||:!!||| !:!!|||.!.!!: !!.!.! ysLysTyrPheIlePheIleIleSerHisValTyrLeuSerLeuIleMetHisAlaTh 478661 : agaaatatttcatatttattatttctcacGTGTACCTGTCGTTGATAATGCATGCAAC : 478717 197 : aThrLeuLeuGlyThrAlaIleLeuMetThrGlyTyrPheIleHisPheCysGlyLeu : 215 !..!! !:!!!.!|||! ! ! !:!!! ! !!::.!.:!:||| ! !|||||| rValTyrValAlaThrGluSer***ValIleMetTrpMetValHisThrIleGlyLeu 478718 : TGTATACGTAGCCACCGAGTCGTGAGTGATTATGTGGATGGTGCATACTATCGGCTTG : 478774 216 : PheAsnIleAlaSerTyrArgIleGluGlnAlaIleAsn : 228 !:!|||||| !!!!|||!.! :!!::! !|||:!! TyrAsnIleIleArgTyrAsnGlnGlnArgLeuIleAsp 478775 : TATAATATCATAAGGTATAATCAGCAAAGATTGATCGAT : 478815 vulgar: CbirOr400 157 228 . KQ414815.1 478602 478815 + 114 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478603 478815 114 + . gene_id 2 ; sequence CbirOr400 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478603 478815 . + . KQ414815.1 exonerate:protein2genome:local exon 478603 478815 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478603 478815 114 + . alignment_id 2 ; Query CbirOr400 ; Align 478603 158 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr400 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 153 -> 218 Target range: 485731 -> 485926 154 : PheLeuValAsnLysSerGluSerHisHisArgAsnThrTyrIleMetThrGluTyrP : 173 .!!|||:!! ! !!:! ! !!!!.!! |||!..! ! !|||! :!!|||:!!| IleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnSerGluHisP 485732 : ATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACTCGGAACATT : 485789 174 : heValAspGlnGluLysHisPheTyrPheIleLeuLeuHisLeuTyrSerAlaLeuPh : 192 |||||||||||:!!|||:!!|||||| !||| ! !|||:!! ! ! !:!!.! heValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLeuPheValIl 485790 : TTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCTCTTCGTCAT : 485846 193 : eIleAlaValAlaThrLeuLeuGlyThrAlaIleLeuMetThrGlyTyrPheIleHis : 211 !|||!.!!.! !..!||||||.!!||| ||||||::: ..! .!. ||| eIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIleIleGlnHis 485847 : TATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATAATACAGCAC : 485903 212 : PheCysGlyLeuPheAsnIle : 218 !|||||||||!:!!..||| ThrCysGlyLeuTyrThrIle 485904 : ACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr400 153 218 . KQ414815.1 485731 485926 + 109 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485732 485926 109 + . gene_id 3 ; sequence CbirOr400 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485732 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485732 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485732 485926 109 + . alignment_id 3 ; Query CbirOr400 ; Align 485732 154 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr400 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 330 -> 381 Target range: 490185 -> 490338 331 : IlePheSerThrAlaTyrAsnValValTrpTyrThrAlaProValCysValGlnLysL : 350 |||.!!!:!! !..! !!!:!||| !|||||||||||||||:!!..!:!!||||||| IleLeuAsnArgCysAsnSerValAsnTrpTyrThrAlaProIleAlaIleGlnLysL 490186 : ATACTTAATAGATGCAACAGCGTGAATTGGTACACGGCTCCAATTGCCATACAAAAAT : 490243 351 : euIleLeuPheLeuLeuGlnArgSerSerLysProTyrGlyLeuLysPheGlyGlyLe : 369 ||:!:|||.!!:!!:!!|||!.!!!!! !::! !! !..!:!!! !.!! !|||:! euLeuLeuIleIleMetGlnAsnThrIleArgAsnSerSerIleThrLeuPheGlyMe 490244 : TGCTGTTGATCATTATGCAAAATACTATACGAAATTCTTCAATAACACTCTTCGGAAT : 490300 370 : uTyrIleThrSerLeuGluSerPheAlaSerIleSer : 381 !||||||:!!|||!!!!!:.!!||| !! !:!!!:! tTyrIleSerSerPheAspGlyPhePheMetValAsn 490301 : GTATATATCGTCTTTCGATGGTTTCTTCATGGTAAAT : 490338 vulgar: CbirOr400 330 381 . KQ414815.1 490185 490338 + 101 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 490186 490338 101 + . gene_id 4 ; sequence CbirOr400 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 490186 490338 . + . KQ414815.1 exonerate:protein2genome:local exon 490186 490338 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 490186 490338 101 + . alignment_id 4 ; Query CbirOr400 ; Align 490186 331 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr409 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 42 -> 224 Target range: 447557 -> 448322 43 : IleSerPheIleLeuValGlnLeuThrThrPheLeuThrThrGluCysThrProAsnM : 62 ...:::||| !|||:!! ! ::: |||...|||||||||! ! !:!!! PheAlaPheArgLeuLeu***IleMetIlePhePheThrThrGluLeuAspValAspT 447558 : tttgctTTTCGATTATTATAgataatgatatttttcaccACAGAATTAGACGTTGATA : 447615 63 : etArgIleArgIlePheSerPheValLeuTyrPheThrIleTyrLeuIleLysTyrSe : 81 !! !:!!!!! ! !:!!! !:!!:!! !!. !||||||:!!:!:||||||!! hrIleLeuSerAspGlyAlaCysIleIleMetLeuLeuIleTyrIleValLysTyrCy 447616 : CGATTTTAAGTGATGGTGCCTGTATAATCATGTTGCTCATCTACATAGTGAAATACTG : 447672 82 : rCysPheCysIleAsnSerAspThrIleArgCysLeuLeuAspLysPheGlnTyrIle : 100 ! ||||||! .!.:!! ! !.!:!:!!!|||:!! !!!:! !!.||| sThrPheCysLysGlnAlaLysAsnValSerCysValAsnGluIleAlaHisTyrTrp 447673 : CACGTTCTGCAAGCAGGCCAAAAACGTGAGTTGTGTGAACGAAATTGCACATTATTGG : 447729 101 : CysAspGluLeuLysAspGluGlyGluIleAlaIleIleLysGluTyrGlyAsnGluA : 120 !! :!! !! ! ! |||||| !...:!! !|||:!!|||.!. !..!!.. . ***Asn***GlyTyrAspGluLeuSerValIleIleLeuLysHisSerSerArgCysC 447730 : TGAAATTAGGGATACGATGAATTAAGCGTTATCATTTTAAAGCACAGCTCAAGATGTT : 447789 121 : laLysArgPhe >>>> Target Intron 1 >>>> ThrLeuIleMetSerVal : 129 .!..!!!!.!. 222 bp ... :::|||||| ysSerSerMet-+ --IlePheThrIleSerVal 447790 : GTTCGAGTATGtt.........................tcattttcacaatttcagtG : 448038 130 : TyrSerIleSerAsnAlaLeuIleLeuCysLeuLeuProIleValProArgIleLeuG : 149 ! ! !! !::! !:!!! !!!! !|||:!! !.!!||| !......||| ValPheAlaLeuSerLeuIleSerPheThrLeuValGluPheValValHisPheLeuA 448039 : GTGTTTGCCTTGTCTTTAATTAGCTTTACCTTGGTTGAGTTCGTGGTAcattttctcg : 448098 150 : lyIlePheThrSerIleAsnValSerGluGluTyrPheMetIleHisValProArgGl : 168 |||...! ! !!!!:||||||||| !..!:!! :!: ! !:!! ! !:! spIleLeuMetProMetAsnValSerThrArgHisGluLeuProPheLeu---IleGl 448099 : atattttaATGCCAATGAACGTATCTACACGGCACGAGCTACCCTTCCTA---ATTCA : 448152 169 : uTyrPheIleAspGlnGluLysTyrTyrTyrTyrIleLeuLeuHisMetGluAlaAsn : 187 !! !||| !||||||!!:|||!:!!:!:!!|||||||||:!! !:!! !.! ! nCysPheCysAspGlnAspLysPhePheHisTyrIleLeuValPheLeuIleValLeu 448153 : ATGTTTCTGTGATCAAGATAAATTCTTCCACTATATATTAGTTTTCTTGATCGTTCTC : 448209 188 : PhePheIleGlyAlaIleValLeuLeuAlaThrGlyThrMetLeuPheGlyCysIleL : 207 !.!!:!:|||!.!! !|||:!!||||||||| !|||! ! !!!. !! !! !: ThrIleLeuGlyGlySerValValLeuAlaThrThrThrThrTyrLeuIlePheSerG 448210 : ACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAACGACTTACTTGATATTCAGTC : 448269 208 : ysTyrIleCysGlyLeuPheArgIleAlaSerCysArgIleAspGlnThrMet : 224 !!:!! !||||||||||||!:!||||||.!!! ..!||| .!!||| lnHisCysCysGlyLeuPheLysIleAlaGly***GluIleMetThrAlaMet 448270 : AACATTGTTGTGGATTGTTCAAAATTGCAGGGTAAGAAATTATGACTGCTATG : 448322 vulgar: CbirOr409 42 224 . KQ414815.1 447557 448322 + 128 M 81 243 5 0 2 I 0 218 3 0 2 M 42 126 G 1 0 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 447558 448322 128 + . gene_id 1 ; sequence CbirOr409 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 447558 447800 . + . KQ414815.1 exonerate:protein2genome:local exon 447558 447800 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 447801 447802 . + . intron_id 1 ; splice_site "TT" KQ414815.1 exonerate:protein2genome:local intron 447801 448022 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 448021 448022 . + . intron_id 0 ; splice_site "tc" KQ414815.1 exonerate:protein2genome:local cds 448023 448322 . + . KQ414815.1 exonerate:protein2genome:local exon 448023 448322 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 447558 448322 128 + . alignment_id 1 ; Query CbirOr409 ; Align 447558 43 243 ; Align 448023 124 126 ; Align 448149 167 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr409 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 120 -> 215 Target range: 457129 -> 457411 121 : LysArgPheThrLeuIleMetSerValTyrSerIleSerAsnAlaLeuIleLeuCysL : 140 |||::: !!!:!!:!!!|||! !!!! !!!!..!||||||:!!:!! ! LysLysLysProSerMetIleThrValSerThrTyrCysGlyAlaLeuValIleThrT 457130 : aaaaaaaaaccttcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCA : 457187 141 : euLeuProIleValProArgIleLeuGlyIlePheThrSerIleAsnValSerGluGl : 159 !|||! !:!! !!|||! !:!!|||! !||| ! ..! !!:!:|||! !|||... hrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgPr 457188 : CGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCC : 457244 160 : uTyrPheMetIleHisValProArgGluTyrPheIleAspGlnGluLysTyrTyrTyr : 178 ! ! !:!!:!!:!! !! !|||||||||:!!|||..!:!!|||||| :!! o---CysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHis 457245 : C---TGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCAT : 457298 179 : TyrIleLeuLeuHisMetGluAlaAsnPhePheIleGlyAlaIleValLeuLeuAlaT : 198 ||||||:!! !|||!!: .!! !.!..!.|||!.!|||! !..!||| !|||! TyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaA 457299 : TATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTA : 457358 199 : hrGlyThrMetLeuPheGlyCysIleLysTyrIleCysGlyLeuPheArgIle : 215 .!! !:!!:!:|||.!. ! !:!! !:!!:!!||||||||||||!:!:!! snGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457359 : ACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr409 120 215 . KQ414815.1 457129 457411 + 126 M 39 117 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457130 457411 126 + . gene_id 2 ; sequence CbirOr409 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457130 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457130 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457130 457411 126 + . alignment_id 2 ; Query CbirOr409 ; Align 457130 121 117 ; Align 457247 161 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr409 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 125 -> 214 Target range: 467626 -> 467890 126 : IleMetSerValTyrSerIleSerAsnAlaLeuIleLeuCysLeuLeuProIleValP : 145 ......|||||||||! !||| !!! ! !:!! !:!! |||||||||.!! PhePheSerValTyrLeuIleProIleIleIleAlaValIleLeuLeuProPheTyrA 467627 : tttttttcagtgTACTTAATTCCAATCATTATAGCCGTTATATTATTACCATTCTacg : 467684 146 : roArgIleLeuGlyIlePheThrSerIleAsnValSerGluGluTyrPheMetIleHi : 164 |||......||| ||||||:!:|||||||||...||| .!! :!!! spIleIlePheAsnIleValThrSerLeuAsnValSerArgGlu---IleGluLeuPr 467685 : atataattttcaatattgtaaCATCGTTGAACGTATCACGTGAG---ATTGAATTACC : 467738 165 : sValProArgGluTyrPheIleAspGlnGluLysTyrTyrTyrTyrIleLeuLeuHis : 183 !!.! !! !|||||||||! !|||:!!...||||||||| ! !! !||||||||| oAlaAspLeuGluTyrPheThrAspGluSerLysTyrTyrProIleLysLeuLeuHis 467739 : TGCTGATCTTGAGTACTTTACAGACGAAAGCAAGTATTATCCTATTAAACTGTTACAT : 467795 184 : MetGluAlaAsnPhePheIleGlyAlaIleValLeuLeuAlaThrGlyThrMetLeuP : 203 :!!! ::!:!! !.!!! !|||!.!! |||:!!:!! !! !! !!:!! !|||! ValValSerHisAlaIleThrGlyValThrValValIlePheIleAspSerThrLeuL 467796 : GTGGTTAGTCATGCTATCACTGGAGTGACGGTTGTGATTTTCATTGATAGTACGTTGT : 467855 204 : heGlyCysIleLysTyrIleCysGlyLeuPheArg : 214 !. !! !:!!:!!||| !|||!.!||||||!:! euIlePheLeuGlnTyrSerCysAlaLeuPheLys 467856 : TGATATTCCTCCAATATTCTTGTGCGCTCTTCAAA : 467890 vulgar: CbirOr409 125 214 . KQ414815.1 467626 467890 + 123 M 34 102 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 467627 467890 123 + . gene_id 3 ; sequence CbirOr409 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 467627 467890 . + . KQ414815.1 exonerate:protein2genome:local exon 467627 467890 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 467627 467890 123 + . alignment_id 3 ; Query CbirOr409 ; Align 467627 126 102 ; Align 467729 161 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr409 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 162 -> 215 Target range: 485767 -> 485926 163 : IleHisValProArgGluTyrPheIleAspGlnGluLysTyrTyrTyrTyrIleLeuL : 182 |||! !:!! ! !|||:!!|||:!!||||||:!!||||||!:!||| !||| ! IleProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaA 485768 : ATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAG : 485825 183 : euHisMetGluAlaAsnPhePheIleGlyAlaIleValLeuLeuAlaThrGlyThrMe : 201 !|||:!:! ! ! !!.!!|||||||||||||||||||||::!||| :: laHisValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLe 485826 : CACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatatt : 485882 202 : tLeuPheGlyCysIleLysTyrIleCysGlyLeuPheArgIle : 215 ::::.....! |||:!!:!!! !|||||||||!:!! !||| uIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIle 485883 : aattatggCGATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr409 162 215 . KQ414815.1 485767 485926 + 121 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485768 485926 121 + . gene_id 4 ; sequence CbirOr409 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485768 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485768 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485768 485926 121 + . alignment_id 4 ; Query CbirOr409 ; Align 485768 163 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr409 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 7 -> 51 Target range: 477940 -> 478072 8 : GlnHisPheSerLeuAsnLysIleLeuLeuArgAlaLeuAlaLeuTrpProTyrHisA : 27 |||:!!!:!!:!!!!:!!|||! !||||||! !|||:!!!.!|||||||||||||||! GlnTyrTyrAsnPheHisLysAsnLeuLeuThrAlaIleGlyLeuTrpProTyrHisA 477941 : CAGTATTACAACTTCCACAAGAACCTATTAACGGCAATAGGACTTTGGCCGTACCATA : 477998 28 : rgThrLysLeuValGluLeuHisLeuValLeuLeuPhePheIlePheIleSerPheIl : 46 .!||||||!!! ! !|||!!. ! !:!!:!! !|||||| !.!!||||||:! snThrLysPheArgThrLeuGlnAsnSerIleValSerPheIleArgPheSerPheVa 477999 : ACACGAAATTCAGAACATTACAAAACAGTATTGTCAGCTTCATTCGCTTTTCGTTTGT : 478055 47 : eLeuValGlnLeuThr : 51 ! !||||||:!!:!! lAlaValGlnValSer 478056 : AGCTGTACAGGTATCT : 478072 vulgar: CbirOr409 7 51 . KQ414815.1 477940 478072 + 100 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 477941 478072 100 + . gene_id 5 ; sequence CbirOr409 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 477941 478072 . + . KQ414815.1 exonerate:protein2genome:local exon 477941 478072 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 477941 478072 100 + . alignment_id 5 ; Query CbirOr409 ; Align 477941 8 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr391 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 118 -> 256 Target range: 457123 -> 457534 119 : AsnGlyLysArgIleThrIleGlyLeuIleIleValGlyIleCysThrGlnThrTyrL : 138 ||| |||::: !:!!! !:!! ! ! !||| ! ! ! !: AsnAspLysLysLysProSerMetIleThrValSerThrTyrCysGlyAlaLeuValI 457124 : aatgataaaaaaaaaccttcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTA : 457181 139 : euIleAlaIleGlnCysLeuProHisIleLeuAspMetIleMetProLysAsnGluTh : 157 !!! !.!!:!:||| !!!!||| :!!||||||!!::!::!:||| !||||||:! leThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSe 457182 : TTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATC : 457238 158 : rTyrMetHisArgPheIleValIleValThrGluGlyPheAlaValGlnGluLysTyr : 176 ! ! !..! :!! !:!!..!.!!||| !|||!.!! !..!:!!|||||| rArgProCysGlu---LeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyr 457239 : ACGCCCCTGTGAG---TTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTAT : 457292 177 : PheTyrLeuLeuPheLeuTyrLeuTyrAlaValLeuThrAlaGlyAlaValThrLeuI : 196 .!.:!!! !:!!.!! !:!!:!! !.!! !||| ! !!.!|||..!||||||! MetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuT 457293 : ATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAA : 457352 197 : leAlaValGlyAlaMetLeuLeuSerCysLeuLysHisIleCysGlyMetPheArgIl : 215 !||| !! !:!!:!:|||:!!!!! !:!! !|||:!!||||||:!!|||!:!:! hrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLe 457353 : CAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCT : 457409 216 : eAlaSerTyrArgPheGluGlnAlaValThrAlaThrLeuGlnAsnIleThrLeuLys : 234 !.!!!!!! !||| ! ! !:!!.!. |||||| ... ::: uThrArg***AlaPheCysProPheLysSerThrGlnLeuGln***Phe***IleIle 457410 : TACTAGGTGAGCTTTCTGTCCCTTTAAATCGACtcaattgcaataattttgaattata : 457466 235 : AsnLysThrMetPheTyrLysGluPheIleTyrAlaValAspIleHisArgLysAlaT : 254 ... ...||| ... ||| :!! ! !..! ! !!:! |||! ThrVal***PhePheLeuAsnPhePheThrHisLeuSerSerCysPheGlnPheAlaA 457467 : actgtctaattttttctgaatttttttactcATTTAAGTTCTTGCTTTCAATTTGCAA : 457526 255 : hrGluTyr : 256 .!|||||| snGluTyr 457527 : ATGaatat : 457534 vulgar: CbirOr391 118 256 . KQ414815.1 457123 457534 + 111 M 43 129 G 1 0 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457124 457534 111 + . gene_id 1 ; sequence CbirOr391 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457124 457534 . + . KQ414815.1 exonerate:protein2genome:local exon 457124 457534 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457124 457534 111 + . alignment_id 1 ; Query CbirOr391 ; Align 457124 119 129 ; Align 457253 163 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr391 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 146 -> 215 Target range: 485722 -> 485926 147 : IleLeuAspMetIleMetProLysAsnGluThrTyrMetHisArgPheIleValIleV : 166 |||||||||!!::!:!!:||| !||| ! ||| ! ||| ||| !||| IleLeuAspIleLeuIleProLeuAsnTyrThr---ArgProArgThrIleProIleA 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACT---CGTCCGCGGACGATTCCTATAA : 485777 167 : alThrGluGlyPheAlaValGlnGluLysTyrPheTyrLeuLeuPheLeuTyrLeuTy : 185 !:!!||| !|||!.!! !|||:!!||||||||||||! !:!! !:!!:!! snSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValVa 485778 : ACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGT : 485834 186 : rAlaValLeuThrAlaGlyAlaValThrLeuIleAlaValGlyAlaMetLeuLeuSer : 204 ! ! !!:!!! ! !||||||:!!..!|||:!!::!... ::::::::::!! lLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAla 485835 : TCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCG : 485891 205 : CysLeuLysHisIleCysGlyMetPheArgIle : 215 :!!:!!|||! !||||||:!!!:!! !||| IleIleGlnHisThrCysGlyLeuTyrThrIle 485892 : ATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr391 146 215 . KQ414815.1 485722 485926 + 107 M 11 33 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485926 107 + . gene_id 2 ; sequence CbirOr391 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485926 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 485723 485926 107 + . alignment_id 2 ; Query CbirOr391 ; Align 485723 147 33 ; Align 485756 159 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr397PN Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 116 -> 168 Target range: 478638 -> 478794 117 : ThrGluTyrPheValAspGlnGluLysTyrPheTyrPheIleLeuLeuHisLeuTyrA : 136 ||||||||||||:!!|||::::::||||||||| ||||||::: |||:!!||| ThrGluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValTyrL 478639 : ACGGAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGTACC : 478696 137 : laAlaGlnTyrIleAlaGlyGlyThrLeuIleGlyThrGlyIleValValValGlyTy : 155 !:!! ! !!: !!.! !..!! !:!!!.!|||! ! !|||:!! !!: euSerLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMetTr 478697 : TGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTATGTG : 478753 156 : rLeuIleTyrPheCysGlyLeuPheAspIleAlaSerTyr : 168 ::!!:!::!! ! !||||||!:!:!!||| !!!!||| pMetValHisThrIleGlyLeuTyrAsnIleIleArgTyr 478754 : GATGGTGCATACTATCGGCTTGTATAATATCATAAGGTAT : 478794 vulgar: CbirOr397PN 116 168 . KQ414815.1 478638 478794 + 104 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478639 478794 104 + . gene_id 1 ; sequence CbirOr397PN ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478639 478794 . + . KQ414815.1 exonerate:protein2genome:local exon 478639 478794 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478639 478794 104 + . alignment_id 1 ; Query CbirOr397PN ; Align 478639 117 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr397PN Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 114 -> 165 Target range: 485773 -> 485926 115 : IleArgThrGluTyrPheValAspGlnGluLysTyrPheTyrPheIleLeuLeuHisL : 134 |||!.!:!!|||:!!||||||||||||:!!|||||||||||| !||| ! !|||: IleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisV 485774 : ATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATG : 485831 135 : euTyrAlaAlaGlnTyrIleAlaGlyGlyThrLeuIleGlyThrGlyIleValValVa : 153 !! ! ! ! !|||!.!!.! !..!|||:!!.!!||| |||:::::::: alValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMe 485832 : TTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattat : 485888 154 : lGlyTyrLeuIleTyrPheCysGlyLeuPheAspIle : 165 :..! :!! :!! !|||||||||!:! ||| tAlaIleIleGlnHisThrCysGlyLeuTyrThrIle 485889 : ggCGATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr397PN 114 165 . KQ414815.1 485773 485926 + 101 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485774 485926 101 + . gene_id 2 ; sequence CbirOr397PN ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485774 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485774 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485774 485926 101 + . alignment_id 2 ; Query CbirOr397PN ; Align 485774 115 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr416PC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 122 -> 273 Target range: 475506 -> 476139 123 : MetThrLeuPheValMetCysPhePhePheIleValThrLeuLeuProIleLeuProA : 142 :::|||:!!.!.||| .!.|||! !:!!! !||||||! !.!!! ! !!! ValThrValLeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerSerL 475507 : gtTACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGTCTA : 475564 143 : rgIlePheGlyIlePhePheLeuValAsnGluSerGluProTyrArgAsnIleTyrIl : 161 :!|||.!!! ! !!!.!!.! !:!!|||||||||...||| ! !!::!:!: || ysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeu---Il 475565 : AGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTG---At : 475618 162 : eArgThrGluTyrPheValAspGluGluLysTyrPheTyrPheIleLeuLeuHisLeu : 180 |||| |||||||||::::::|||:!!||||||||||||.!.! !:!!:!!:!!! ! eArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGln 475619 : acgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAG : 475675 181 : TyrAlaValGlnTyrIleAlaGlyGlyThrThrLeuValAlaGlyThrPheLeuThrG : 200 !!.!..! !:!: !||| !||| !:!!!.!.!!! !.!!.!.!!!||| ThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrM 475676 : ACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCA : 475735 201 : lyTyrPheThrTyrCysCysGlyLeuPheAsnIleAla{Se} >>>> Target In : 213 !!::!!. !:!!||| ...||||||...|||...{||} 183 etTrpLeuGlnHisCysIleSerLeuPheGluIleVal{Se}++ 475736 : TGTGGTTGCAACATTGCATaagtttatttgaaattgtt{ag}gt.............. : 475778 214 : tron 1 >>>> {r}TyrArgIleGluGlnThrLysTrpIleAsnSerAspGluLeu : 227 bp {|}||||||||||||:!! !! !!:!! !|||! ! ++{r}TyrArgIleGluLysLeuIleIleGlnCysAsnAlaGluPro 475779 : ...........ag{t}TATCGTATTGAAAAACTGATTATACAGTGCAACGCTGAGCCG : 475999 228 : ProThrArgMetAsnLysArgGlnValAsnLysLysLysLysLeuIleHisAlaValA : 247 !..! !...!!.::: !!!. !|||!..!:!|||! ||||||:!!||||||! TyrValSerGlnLysArgLeuHisArgAsnSerArgLysIleLeuIleAsnAlaValV 476000 : TACGTTTCGCAAAAACGTTTGCACAGAAACAGCAGGAAGATTCTAATTAATGCTGTGG : 476059 248 : spIleHisArgThrSerLeuLysThrIleGluPheCysLeuTyrAsnPheGluLysTh : 266 !!!:||||||! ! !|||:!! !:!!...! ! :::... ::: alMetHisArgArgValLeuGlnLeuValSerCysValArgPheLysAsn***ArgTy 476060 : TTATGCACAGAAGAGTATTACAGTTGGTATCTTGCGTGaggtttaaaaattaacgata : 476116 267 : rCysPheLeuIleIleValLeu : 273 !!|||::::::::: ||| rArgPheIleValLeuPheLeu 476117 : tcGTTTCAttgttctctttctc : 476139 vulgar: CbirOr416PC 122 273 . KQ414815.1 475506 476139 + 147 M 37 111 G 1 0 M 52 156 S 0 2 5 0 2 I 0 179 3 0 2 S 1 1 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475507 476139 147 + . gene_id 1 ; sequence CbirOr416PC ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 475507 475775 . + . KQ414815.1 exonerate:protein2genome:local exon 475507 475775 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local splice5 475776 475777 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 475776 475958 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 475957 475958 . + . intron_id 0 ; splice_site "ag" KQ414815.1 exonerate:protein2genome:local cds 475959 476139 . + . KQ414815.1 exonerate:protein2genome:local exon 475959 476139 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475507 476139 147 + . alignment_id 1 ; Query CbirOr416PC ; Align 475507 123 111 ; Align 475618 161 156 ; Align 475960 214 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr395PI(FS) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 292 -> 351 Target range: 458543 -> 458798 293 : TyrAsnValArgTrpTyrAspAlaProIleArgValGlnArgLeuIlePhePheLeuL : 312 ||| :!!! !|||||| !||||||:!!|||:!!|||!:!! !:!!!!.|||:!!! TyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleS 458544 : TACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATAT : 458601 313 : euGlnArgGlyThrMetSerTyrAlaMetLysPheGlyGlyValTyrThrLeuSerLe : 331 !:!!|||.!!! !! ! !:!!:!! .!. !|||:!! !! ! |||.. erGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPh 458602 : CAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatcctt : 458658 332 : uGluAsnPheAlaThr >>>> Target Intron 1 >>>> LeuSerThrAlaS : 341 .||| ||||||||| 78 bp !!!! !! !|||: eGluPhePheAlaThr++ ++PheMetLysAlaA 458659 : cgaatttttcgccaCGgt.........................agTTCATGAAAGCAG : 458766 342 : erIleSerTyrPheThrValIleTyrSerIle : 351 !!!!:||||||! !||||||:!!||||||||| laMetSerTyrCysThrValLeuTyrSerIle 458767 : CGATGTCCTATTGCACGGTATTATATTCCATC : 458798 vulgar: CbirOr395PI(FS) 292 351 . KQ414815.1 458543 458798 + 105 M 44 132 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458544 458798 105 + . gene_id 1 ; sequence CbirOr395PI(FS) ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 458544 458675 . + . KQ414815.1 exonerate:protein2genome:local exon 458544 458675 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 458676 458677 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 458676 458753 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 458752 458753 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458754 458798 . + . KQ414815.1 exonerate:protein2genome:local exon 458754 458798 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458544 458798 105 + . alignment_id 1 ; Query CbirOr395PI(FS) ; Align 458544 293 132 ; Align 458754 337 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr402PSE(S) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 123 -> 214 Target range: 460970 -> 461240 124 : IleValPheThrLeuLeuThrIleCysGlyLeuPheIleLeuThrLeuLeuProPheL : 143 ...|||||| !:!!..!.!!! !!|||.!.!!::!!.!!|||:!!|||!:!| PheValPheLeuAlaIleValPheLeuCysLeuIleMetIleAlaLeuIleProTyrL 460971 : ttcgtctttttaGCAATTGTATTCTTATGCCTAATAATGATCGCGTTAATTCCGTATT : 461028 144 : euProArgIlePheSerIlePheSerLeuValAsnGluSerLysSerTyrCysAsnIl : 162 ||||||||||||||:!!||| ! !!!! ! !|||..!!!!::: !! ! !!.|| euProArgIlePheAlaIleValThrHisGlnAsnArgThrArgPro---LeuLysIl 461029 : TGCCGCGGATCTTCGCGATTGTGACGCATCAGAACAGAACTCGTCCG---TTGAAAAT : 461082 163 : eTyrIleArgThrGluTyrPheValAspGlnGluLysTyrPheTyrPheIleLeuLeu : 181 | |||! !..!|||||| !||||||!!..!.:!!|||||| !!.!.|||:!!||| eProIleIleValGluTyrHisValAspHisAsnGluTyrPheAspLeuIleIleLeu 461083 : ACCGATCATCGTGGAGTATCACGTGGATCATAACGAGTACTTCGATCTGATCATATTA : 461139 182 : HisLeuTyrValAlaGlnTyrIleThrGlyGlyIleLeuLeuGlyAlaAlaIleLeuL : 201 |||:!! !! !!..!!!.!:!||| ! ! !!:!!:!!:!!..!|||! !:!: ! HisIleAsnPheCysHisPheIleGlyPheCysValValIleSerAlaGluValThrA 461140 : CACATTAACTTCTGCCACTTTATCGGCTTCTGCGTTGTTATATCTGCTGAAGTGACAA : 461199 202 : euAlaGlyTyrIleThrTyrPheCysGlyLeuPheAsnIle : 214 ! !! ! ! ! !:!!.!!|||..!||||||:!!:!! snLeuValLeuAlaLysHisIleCysSerLeuPheAspLeu 461200 : ATTTGGTACTTGCGAAACACATTTGCTCGTTGTTCGATCTT : 461240 vulgar: CbirOr402PSE(S) 123 214 . KQ414815.1 460970 461240 + 119 M 35 105 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 460971 461240 119 + . gene_id 1 ; sequence CbirOr402PSE(S) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 460971 461240 . + . KQ414815.1 exonerate:protein2genome:local exon 460971 461240 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 460971 461240 119 + . alignment_id 1 ; Query CbirOr402PSE(S) ; Align 460971 124 105 ; Align 461076 160 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr402PSE(S) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 160 -> 214 Target range: 485764 -> 485926 161 : AsnIleTyrIleArgThrGluTyrPheValAspGlnGluLysTyrPheTyrPheIleL : 180 !..||| !|||!.!:!!|||:!!||||||||||||:!!|||||||||||| !||| ThrIleProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleA 485765 : ACGATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTG : 485822 181 : euLeuHisLeuTyrValAlaGlnTyrIleThrGlyGlyIleLeuLeuGlyAlaAlaIl : 199 ! !|||:!! !:!! ! !||| !!.! !:!!||||||.!!... || laAlaHisValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIl 485823 : CAGCACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaat : 485879 200 : eLeuLeuAlaGlyTyrIleThrTyrPheCysGlyLeuPheAsnIle : 214 ||||::: ..! ||| !:!! !|||||||||!:!!..||| eLeuIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIle 485880 : attaattatggCGATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr402PSE(S) 160 214 . KQ414815.1 485764 485926 + 108 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485765 485926 108 + . gene_id 2 ; sequence CbirOr402PSE(S) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485765 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485765 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485765 485926 108 + . alignment_id 2 ; Query CbirOr402PSE(S) ; Align 485765 161 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr402PSE(S) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 335 -> 395 Target range: 458543 -> 458801 336 : TyrAsnValArgTrpTyrIleAlaProValArgValGlnArgLeuIleLeuPheLeuL : 355 ||| :!!! !|||||| !||||||:!!|||:!!|||!:!! !:!!||||||:!!! TyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleS 458544 : TACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATAT : 458601 356 : euGlnThrGlyAlaLysAlaTyrAspIleLysLeuGlyGlyPheCysThrLeuSerLe : 374 !:!! !.!! !!:!!.! !..!:!: :!! !|||.!. !! ! |||.. erGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPh 458602 : CAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatcctt : 458658 375 : uGluAsnPheAlaSer >>>> Target Intron 1 >>>> LeuSerThrAlaS : 384 .||| ||||||:!! 78 bp !!!! !! !|||: eGluPhePheAlaThr++ ++PheMetLysAlaA 458659 : cgaatttttcgccaCGgt.........................agTTCATGAAAGCAG : 458766 385 : erIleSerTyrPheThrValIleTyrSerIleHis : 395 !!!!:||||||! !||||||:!!|||||||||:!! laMetSerTyrCysThrValLeuTyrSerIleAsn 458767 : CGATGTCCTATTGCACGGTATTATATTCCATCAAT : 458801 vulgar: CbirOr402PSE(S) 335 395 . KQ414815.1 458543 458801 + 103 M 44 132 5 0 2 I 0 74 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458544 458801 103 + . gene_id 3 ; sequence CbirOr402PSE(S) ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 458544 458675 . + . KQ414815.1 exonerate:protein2genome:local exon 458544 458675 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 458676 458677 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 458676 458753 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 458752 458753 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458754 458801 . + . KQ414815.1 exonerate:protein2genome:local exon 458754 458801 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458544 458801 103 + . alignment_id 3 ; Query CbirOr402PSE(S) ; Align 458544 336 132 ; Align 458754 380 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr417INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 162 -> 214 Target range: 478638 -> 478794 163 : ThrGluTyrPheValAspGluGluLysTyrPheTyrPheIleLeuLeuHisLeuTyrA : 182 ||||||||||||:!!||||||:::||||||||| ||||||::: |||:!!||| ThrGluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValTyrL 478639 : ACGGAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGTACC : 478696 183 : laValLeuTyrIleAlaAlaGlyThrIleLeuAlaThrGlnThrAlaMetLeuGlyTy : 201 ! !||| !!: !||| !..! !:!!||||||:!!:!! !:!!:!! !!: euSerLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMetTr 478697 : TGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTATGTG : 478753 202 : rPheIleTyrCysCysGlyLeuPheAsnIleAlaSerTyr : 214 :.!.:!::!! ! !||||||!:!|||||| !!!!||| pMetValHisThrIleGlyLeuTyrAsnIleIleArgTyr 478754 : GATGGTGCATACTATCGGCTTGTATAATATCATAAGGTAT : 478794 vulgar: CbirOr417INT 162 214 . KQ414815.1 478638 478794 + 123 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478639 478794 123 + . gene_id 1 ; sequence CbirOr417INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478639 478794 . + . KQ414815.1 exonerate:protein2genome:local exon 478639 478794 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478639 478794 123 + . alignment_id 1 ; Query CbirOr417INT ; Align 478639 163 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr417INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 328 -> 387 Target range: 458543 -> 458798 329 : TyrAsnValArgTrpTyrAspAlaProIleArgValGlnArgLeuIlePhePheLeuL : 348 ||| :!!! !|||||| !||||||:!!|||:!!|||!:!! !:!!!!.|||:!!! TyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleS 458544 : TACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATAT : 458601 349 : euGlnArgGlyThrMetSerTyrAlaMetLysPheGlyGlyValTyrThrLeuSerLe : 367 !:!!|||.!!! !! ! !:!!:!! .!. !|||:!! !! ! |||.. erGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPh 458602 : CAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatcctt : 458658 368 : uGluAsnPheAlaThr >>>> Target Intron 1 >>>> LeuSerThrThrS : 377 .||| ||||||||| 78 bp !!!! !! !.!!: eGluPhePheAlaThr++ ++PheMetLysAlaA 458659 : cgaatttttcgccaCGgt.........................agTTCATGAAAGCAG : 458766 378 : erIleSerTyrPheThrIleIleTyrSerIle : 387 !!!!:||||||! !|||:!!:!!||||||||| laMetSerTyrCysThrValLeuTyrSerIle 458767 : CGATGTCCTATTGCACGGTATTATATTCCATC : 458798 vulgar: CbirOr417INT 328 387 . KQ414815.1 458543 458798 + 100 M 44 132 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458544 458798 100 + . gene_id 2 ; sequence CbirOr417INT ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 458544 458675 . + . KQ414815.1 exonerate:protein2genome:local exon 458544 458675 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 458676 458677 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 458676 458753 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 458752 458753 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458754 458798 . + . KQ414815.1 exonerate:protein2genome:local exon 458754 458798 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458544 458798 100 + . alignment_id 2 ; Query CbirOr417INT ; Align 458544 329 132 ; Align 458754 373 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr417INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 122 -> 211 Target range: 475506 -> 475770 123 : MetThrLeuPheMetMetCysPhePhePheIleValThrLeuLeuProIleLeuProA : 142 :::|||:!!.!.:!: .!.|||! !:!!! !||||||! !.!!! ! !!! ValThrValLeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerSerL 475507 : gtTACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGTCTA : 475564 143 : rgIlePheGlyIlePhePheLeuAlaAsnLysSerGluProTyrArgAsnIleTyrIl : 161 :!|||.!!! ! !!!.!!.! ! !|||:!!|||...||| ! !!::!:!: || ysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeu---Il 475565 : AGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTG---At : 475618 162 : eArgThrGluTyrPheValAspGluGluLysTyrPheTyrPheIleLeuLeuHisLeu : 180 |||| |||||||||::::::|||:!!||||||||||||.!.! !:!!:!!:!!! ! eArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGln 475619 : acgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAG : 475675 181 : TyrAlaValLeuTyrIleAlaAlaGlyThrIleLeuAlaThrGlnThrAlaMetLeuG : 200 !!.!..!:!! !:!: !!.! !||| !:!!||||||:!!.!! !.!. ! ThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrM 475676 : ACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCA : 475735 201 : lyTyrPheIleTyrCysCysGlyLeuPheAsnIle : 211 !!::!!. !:!!||| ...||||||...||| etTrpLeuGlnHisCysIleSerLeuPheGluIle 475736 : TGTGGTTGCAACATTGCATaagtttatttgaaatt : 475770 vulgar: CbirOr417INT 122 211 . KQ414815.1 475506 475770 + 100 M 37 111 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475507 475770 100 + . gene_id 3 ; sequence CbirOr417INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475507 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475507 475770 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 475507 475770 100 + . alignment_id 3 ; Query CbirOr417INT ; Align 475507 123 111 ; Align 475618 161 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr408NTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 34 -> 129 Target range: 485767 -> 486528 35 : IleHisIleProArgGluTyrPheIleAspGlnGluLysTyrTyrTyrCysIleLeuL : 54 |||! !||| ! !|||:!!|||:!!||||||:!!||||||!:!||| !||| ! IleProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaA 485768 : ATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAG : 485825 55 : euHisMetAspValSerLeuPheMetGlyAlaIleValLeuValAlaThrGlyThrLe : 73 !|||:!:! !:!!! !:!!.!!!!:|||||||||||||||:!!::!||| || laHisValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLe 485826 : CACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatatt : 485882 74 : uLeuPheGlyCysMetLysTyrMetCysGlyLeuPheArgIleAla{Se} >>>> T : 89 |:::.....! !!::!!:!!! |||||||||!:!! !|||!.!{.!} uIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIleVal{Gl}++ 485883 : aattatggCGATAATACAGCACACCTGTGGTTTGTATACAATCGTT{GG}gt...... : 485934 90 : arget Intron 1 >>>> {r}TyrArgIleAspGlnThrMetLysThrProMetP : 101 476 bp {!}||||||||||||!!.|||.!. .!! !!!: ++{y}TyrArgIleAspHisThrPheValAlaAsnIleP 485935 : ...................ag{C}TATCGTATAGATCACACGTTTGTTGCAAACATAC : 486442 102 : heGlnIleAlaGlyLeuSerLysAspTyrValIleTyrLysThrIleValHisAlaIl : 120 !:!!:!! ! !..!!:! !:!!|||:!!!:!! !|||||| !:! roGlyLeuSerProAlaGluArgArgValLeuIleHisArgLysIleValSerLeuVa 486443 : CAGGACTTTCTCCTGCGGAAAGGAGAGTTCTAATTCACAGAAAAATAGTCTCGCTCGT : 486499 121 : eAspIleHisArgLysAlaIleGluVal : 129 ::!!:!:|||!:!!:!!.!! |||:!! lAsnLeuHisLysArgValLysGluLeu 486500 : GAATTTGCACAAAAGAGTCAAGGAGTTA : 486528 vulgar: CbirOr408NTE 34 129 . KQ414815.1 485767 486528 + 164 M 54 162 S 0 2 5 0 2 I 0 472 3 0 2 S 1 1 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485768 486528 164 + . gene_id 1 ; sequence CbirOr408NTE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 485768 485931 . + . KQ414815.1 exonerate:protein2genome:local exon 485768 485931 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 485932 485933 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 485932 486407 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 486406 486407 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 486408 486528 . + . KQ414815.1 exonerate:protein2genome:local exon 486408 486528 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485768 486528 164 + . alignment_id 1 ; Query CbirOr408NTE ; Align 485768 35 162 ; Align 486409 90 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr408NTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 178 -> 247 Target range: 489880 -> 490320 179 : LeuPheValThrLeuLeuTyrIlePheIleCysAsnTyrIleGlyGlnGluLeuThrA : 198 |||! !:!! !|||!!!||||||||||||||||||||||||||||||! ::: : LeuCysLeuGlnLeuPheTyrIlePheIleCysAsnTyrIleGlyGlnGlyValLysA 489881 : TTGTGTCTGCAGTTGTTTTACATATTCATTTGCAATTATATTGGACAGGGagtaaaaa : 489938 199 : spHisTyrAsnHisMetPheIleSer{Il} >>>> Target Intron 1 >>>> : 207 :: ::!.!.:!:||| !..!{||} 233 bp snCysSerSerGluValPheTyrAsp{Il}++ - 489939 : attgcagttcTGAGGTATTTTATGAC{AT}gt.........................t : 490198 208 : {e}TyrSerValGlnTrpTyrValThrProLeuHisIleGlnLysIleIleLeuPhe : 225 {|} !!||||||.!.||||||..!.!!|||:!! !|||||||||:!::!:|||.!! +{e}AsnSerValAsnTrpTyrThrAlaProIleAlaIleGlnLysLeuLeuLeuIle 490199 : g{C}AACAGCGTGAATTGGTACACGGCTCCAATTGCCATACAAAAATTGCTGTTGATC : 490252 226 : LeuLeuGlnArgGlyThrLysAsnPheTyrPheValPheGlyGlyIleLeuValMetS : 245 :!!:!!|||!.! !! !::!|||! !! .!...!.!! !|||!!:! !:!! !| IleMetGlnAsnThrIleArgAsnSerSerIleThrLeuPheGlyMetTyrIleSerS 490253 : ATTATGCAAAATACTATACGAAATTCTTCAATAACACTCTTCGGAATGTATATATCGT : 490312 246 : erIleGlu : 247 ||.!!!!: erPheAsp 490313 : CTTTCGAT : 490320 vulgar: CbirOr408NTE 178 247 . KQ414815.1 489880 490320 + 110 M 28 84 S 0 2 5 0 2 I 0 229 3 0 2 S 1 1 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 489881 490320 110 + . gene_id 2 ; sequence CbirOr408NTE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 489881 489966 . + . KQ414815.1 exonerate:protein2genome:local exon 489881 489966 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 489967 489968 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 489967 490199 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 490198 490199 . + . intron_id 0 ; splice_site "TG" KQ414815.1 exonerate:protein2genome:local cds 490200 490320 . + . KQ414815.1 exonerate:protein2genome:local exon 490200 490320 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 489881 490320 110 + . alignment_id 2 ; Query CbirOr408NTE ; Align 489881 179 84 ; Align 490201 208 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr408NTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 39 -> 90 Target range: 478641 -> 478794 40 : GluTyrPheIleAspGlnGluLysTyrTyrTyrCysIleLeuLeuHisMetAspValS : 59 |||||||||||||||::::::||||||::: |||::: |||:!! !!:!!| GluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValTyrLeuS 478642 : GAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGTACCTGT : 478699 60 : erLeuPheMetGlyAlaIleValLeuValAlaThrGlyThrLeuLeuPheGlyCysMe : 78 |||||.!.||| !|||! !|||! !|||||||||! !:!!! !:!!.!! !!! || erLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMetTrpMe 478700 : CGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTATGTGGAT : 478756 79 : tLysTyrMetCysGlyLeuPheArgIleAlaSerTyr : 90 | !:!!! !||||||!:!!.!||| !!!!||| tValHisThrIleGlyLeuTyrAsnIleIleArgTyr 478757 : GGTGCATACTATCGGCTTGTATAATATCATAAGGTAT : 478794 vulgar: CbirOr408NTE 39 90 . KQ414815.1 478641 478794 + 100 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478642 478794 100 + . gene_id 3 ; sequence CbirOr408NTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478642 478794 . + . KQ414815.1 exonerate:protein2genome:local exon 478642 478794 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478642 478794 100 + . alignment_id 3 ; Query CbirOr408NTE ; Align 478642 40 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr396CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 167 -> 261 Target range: 485767 -> 486525 168 : IleHisIleProThrGluTyrPheIleAsnGlnGluLysTyrTyrTyrTyrIleValL : 187 |||! !||| !:!!|||:!!|||:!!:!!|||:!!||||||!:!||| !|||!.! IleProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaA 485768 : ATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAG : 485825 188 : euHisMetAspAlaSerValPheIleGlySerIleValLeuProAlaThrGlyThrLe : 206 !|||:!:! ! !! !|||.!!||||||:!!|||||||||! !::!||| || laHisValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLe 485826 : CACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatatt : 485882 207 : uLeuPheGlyCysMetLysTyrMetCysGlyLeuPheArgIleAla{Se} >>>> T : 222 |:::.....! !!::!!:!!! |||||||||!:!! !|||!.!{.!} uIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIleVal{Gl}++ 485883 : aattatggCGATAATACAGCACACCTGTGGTTTGTATACAATCGTT{GG}gt...... : 485934 223 : arget Intron 1 >>>> {r}TyrArgIleAspGlnThrMetLysThrProMetP : 234 476 bp {!}||||||||||||!!.|||.!. .!! !!!: ++{y}TyrArgIleAspHisThrPheValAlaAsnIleP 485935 : ...................ag{C}TATCGTATAGATCACACGTTTGTTGCAAACATAC : 486442 235 : heGlnIleAlaGlyLeuSerLysAspTyrValIleTyrLysThrIleValHisAlaIl : 253 !:!!:!! ! !..!!:! !:!!|||:!!!:!! !|||||| !:! roGlyLeuSerProAlaGluArgArgValLeuIleHisArgLysIleValSerLeuVa 486443 : CAGGACTTTCTCCTGCGGAAAGGAGAGTTCTAATTCACAGAAAAATAGTCTCGCTCGT : 486499 254 : eAspIleHisArgLysAlaIleGlu : 261 ::!!:!:|||!:!!:!!.!! ||| lAsnLeuHisLysArgValLysGlu 486500 : GAATTTGCACAAAAGAGTCAAGGAG : 486525 vulgar: CbirOr396CTE 167 261 . KQ414815.1 485767 486525 + 158 M 54 162 S 0 2 5 0 2 I 0 472 3 0 2 S 1 1 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485768 486525 158 + . gene_id 1 ; sequence CbirOr396CTE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 485768 485931 . + . KQ414815.1 exonerate:protein2genome:local exon 485768 485931 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 485932 485933 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 485932 486407 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 486406 486407 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 486408 486525 . + . KQ414815.1 exonerate:protein2genome:local exon 486408 486525 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485768 486525 158 + . alignment_id 1 ; Query CbirOr396CTE ; Align 485768 168 162 ; Align 486409 223 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr412PC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 136 -> 222 Target range: 448067 -> 448322 137 : SerIleIleLeuCysLeuProTyrIleLeuAspIleValMetProLysAsnGluSerT : 156 !!!:!::!! !! !:!! !:::...|||||||||:::||||||! !|||! !||| ThrLeuValGluPheValValHisPheLeuAspIleLeuMetProMetAsnValSerT 448068 : ACCTTGGTTGAGTTCGTGGTAcattttctcgatattttaATGCCAATGAACGTATCTA : 448125 157 : yrGlyIleTyrIleMetGluIleMetThrLysTyrPheIleValSerGluLysTyrTy : 175 !! :!! :!: .!!:!:! !:!!! !||| !! !..!!!:|||!:!!: hrArg---HisGluLeuProPheLeuIleGlnCysPheCysAspGlnAspLysPhePh 448126 : CACGG---CACGAGCTACCCTTCCTAATTCAATGTTTCTGTGATCAAGATAAATTCTT : 448179 176 : rTyrLeuIlePheThrTyrLeuAsnIleSerCysSerAlaGlyIleIleAlaTyrVal : 194 !:!!! !|||!!...!!:!|||! !:!! ! !! ! !||| !! !!.! :!! eHisTyrIleLeuValPheLeuIleValLeuThrIleLeuGlyGlySerValValLeu 448180 : CCACTATATATTAGTTTTCTTGATCGTTCTCACTATTTTGGGTGGAAGTGTGGTATTA : 448236 195 : AlaThrThrThrMetPheIleSerPhePheLysHisIleCysGlyMetPheGluIleA : 214 ||||||||||||! !:!:!:! !||| !:!!||| !||||||:!!|||:!!|||| AlaThrThrThrThrTyrLeuIlePheSerGlnHisCysCysGlyLeuPheLysIleA 448237 : GCCACTACAACGACTTACTTGATATTCAGTCAACATTGTTGTGGATTGTTCAAAATTG : 448296 215 : laSerTyrArgIleGluGlnValMet : 222 ||.!!!! ..!||| ! !.!||| laGly***GluIleMetThrAlaMet 448297 : CAGGGTAAGAAATTATGACTGCTATG : 448322 vulgar: CbirOr412PC 136 222 . KQ414815.1 448067 448322 + 102 M 21 63 G 1 0 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448068 448322 102 + . gene_id 1 ; sequence CbirOr412PC ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448068 448322 . + . KQ414815.1 exonerate:protein2genome:local exon 448068 448322 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 448068 448322 102 + . alignment_id 1 ; Query CbirOr412PC ; Align 448068 137 63 ; Align 448131 159 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr423NTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 97 -> 166 Target range: 485722 -> 485926 98 : LeuPheAspIlePheTyrLeuValAsnLysSerGluProTyrArgAsnIleTyrMetA : 117 :!!.!.||||||!!. !! !:!!||| ! !!!...||| |||!..||| !!!:! IleLeuAspIleLeuIleProLeuAsnTyrThrArgPro---ArgThrIleProIleA 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCG---CGGACGATTCCTATAA : 485777 118 : rgThrGluTyrPheValAspGlnGluLysTyrPheTyrPheThrLeuLeuHisLeuTy : 136 .!:!!|||:!!||||||||||||:!!|||||||||||| !! ! ! !|||:!! snSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValVa 485778 : ACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGT : 485834 137 : rAlaValLeuTyrIleGluCysGlyValLeuLeuGlyGlyAlaIleValMetThrGly : 155 ! ! !!:!! !|||! ... !|||||||||.!! |||:::::: ..! lLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAla 485835 : TCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCG : 485891 156 : TyrGlyThrTyrSerCysGlyLeuPheAsnIle : 166 ! !:!!!!!|||||||||!:!!..||| IleIleGlnHisThrCysGlyLeuTyrThrIle 485892 : ATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr423NTE 97 166 . KQ414815.1 485722 485926 + 100 M 13 39 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485926 100 + . gene_id 1 ; sequence CbirOr423NTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485926 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 485723 485926 100 + . alignment_id 1 ; Query CbirOr423NTE ; Align 485723 98 39 ; Align 485762 112 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr405PN Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 85 -> 166 Target range: 485686 -> 485926 86 : LeuIleIlePheThrLeuValProIleLeuProArgIlePheAspIlePhePheLeuV : 105 |||:!!:!:.!.! !|||! ! !.!! ! !!!!|||.!.||||||!!..!!! !: LeuLeuValLeuIleLeuGlyIlePheAsnAsnSerIleLeuAspIleLeuIleProL 485687 : TTACTTGTGCTGATTCTTGGTATATTTAACAACAGTATTCTGGACATTTTGATTCCTT : 485744 106 : alAsnLysSerGluProTyrArgTyrIleTyrMetLysThrGluTyrPheIleAspGl : 124 !!||| ! !!!...||| ||| ||| !!!:!!.:!!|||:!!|||:!!||||| euAsnTyrThrArgPro---ArgThrIleProIleAsnSerGluHisPheValAspGl 485745 : TGAATTACACTCGTCCG---CGGACGATTCCTATAAACTCGGAACATTTTGTCGATCA : 485798 125 : nGluLysTyrPheTyrPheIleLeuLeuHisLeuTyrAlaValLeuTyrIleGlyGly : 143 |:!!|||||||||||| !||| ! !|||:!! ! ! !!:!! !||||||!.! nGlnLysTyrPheTyrProIleAlaAlaHisValValLeuPheValIleIleGlyAla 485799 : GCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCTCTTCGTCATTATTGGCGCG : 485855 144 : AlaThrLeuValValAlaGlyIleValLeuThrGlyTyrPheThrTyrPheCysGlyL : 163 !..!|||:!! !... |||:::::: ..! .!. !:!! !||||||| IleValLeuLeuSerThrGluIleLeuIleMetAlaIleIleGlnHisThrCysGlyL 485856 : ATAGTATTACTCAGCaccgaaatattaattatggCGATAATACAGCACACCTGTGGTT : 485915 164 : euPheAsnIle : 166 ||!:!!..||| euTyrThrIle 485916 : TGTATACAATC : 485926 vulgar: CbirOr405PN 85 166 . KQ414815.1 485686 485926 + 110 M 25 75 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485687 485926 110 + . gene_id 1 ; sequence CbirOr405PN ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485687 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485687 485926 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 485687 485926 110 + . alignment_id 1 ; Query CbirOr405PN ; Align 485687 86 75 ; Align 485762 112 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr405PN Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 117 -> 179 Target range: 478638 -> 478824 118 : ThrGluTyrPheIleAspGlnGluLysTyrPheTyrPheIleLeuLeuHisLeuTyrA : 137 ||||||||||||||||||::::::||||||||| ||||||::: |||:!!||| ThrGluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValTyrL 478639 : ACGGAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGTACC : 478696 138 : laValLeuTyrIleGlyGlyAlaThrLeuValValAlaGlyIleValLeuThrGlyTy : 156 ! !||| !!: !!.!.!!..!! !|||!.!.!!! ! !:!!! ! !!: euSerLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMetTr 478697 : TGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTATGTG : 478753 157 : rPheThrTyrPheCysGlyLeuPheAsnIleAlaSerTyrArgIleLysGlnAlaMet : 175 :.!...!:!! ! !||||||!:!|||||| !!!!|||!.! :!!::! !!!: pMetValHisThrIleGlyLeuTyrAsnIleIleArgTyrAsnGlnGlnArgLeuIle 478754 : GATGGTGCATACTATCGGCTTGTATAATATCATAAGGTATAATCAGCAAAGATTGATC : 478810 176 : GlnIleIleAsn : 179 .!. |||:!! AspProIleHis 478811 : GATCCGATACAC : 478824 vulgar: CbirOr405PN 117 179 . KQ414815.1 478638 478824 + 100 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478639 478824 100 + . gene_id 2 ; sequence CbirOr405PN ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478639 478824 . + . KQ414815.1 exonerate:protein2genome:local exon 478639 478824 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478639 478824 100 + . alignment_id 2 ; Query CbirOr405PN ; Align 478639 118 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr410PI Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 139 -> 220 Target range: 130406 -> 130166 140 : IleIleThrPheSerLeuLeuProIleLeuProGlnIlePheGlyIlePheTyrLeuV : 159 :!!:!! !||| !!!!|||! !|||||||||||||||!!.||||||.!!! ! !: LeuLeuGlyPheValPheLeuGlnIleLeuProGlnIleLeuGlyIleIleSerProL 130406 : CTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAATTTTAGGCATAATTTCACCTC : 130349 160 : alAsnLysSerGluProTyrArgAsnIleTyrIleThrThrGluTyrPheValAspGl : 178 !!!.!:!!! !.!. !! !.!!!.:!! !:!! !|||||||||||||||||| ! euThrGluIleAsnThr---AsnLysLeuLeuValArgThrGluTyrPheValAspTy 130348 : TAACCGAGATCAATACT---AACAAATTACTCGTTCGAACCGAATACTTTGTCGACTA : 130295 179 : nGluLysAsnPheTyrPheIlePheLeuHisLeuTyrLeuSerHisTyrIleAlaVal : 197 :!! ! !!.!!|||.!.||| :!!||| ! !:!!:!! !::!||| rLysAspTyrIleTyrLeuIleThrIleHisAlaThrIleAlaIleMetCysSerVal 130294 : CAAAGATTACATTTATCTAATCACGATCCACGCGACTATAGCAATAATGTGTAGTGTG : 130238 198 : SerThrLeuValGlyThrGlyIleLeuIleThrGlyTyrPheIleHisPheCysGlyL : 217 !!!! !! !:!!.!!!:!! !|||||| ... :::...!!:|||.!! !!|||: ThrMetGlnIleSerSerAspIleLeuAsnAsnIlePheMetMetHisIleSerGlyM 130237 : ACTATGCAAATTAGCAGCGATAttttgaataacatatttatGATGCACATCAGTGGAA : 130178 218 : euPheAsnVal : 220 !!|||.!.||| etPheGluVal 130177 : TGTTCGAGGTA : 130167 vulgar: CbirOr410PI 139 220 . KQ414817.1 130406 130166 - 102 M 25 75 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130167 130406 102 - . gene_id 1 ; sequence CbirOr410PI ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130167 130406 . - . KQ414817.1 exonerate:protein2genome:local exon 130167 130406 . - . insertions 0 ; deletions 1 KQ414817.1 exonerate:protein2genome:local similarity 130167 130406 102 - . alignment_id 1 ; Query CbirOr410PI ; Align 130407 140 75 ; Align 130332 166 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr406 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 133 -> 215 Target range: 130406 -> 130166 134 : LeuPheValPheThrLeuLeuProIleLeuProArgIlePheGlyIlePheSerLeuL : 153 |||.!!! !|||..!!!!|||! !|||||||||!:!|||!!.||||||.!!|||! !| LeuLeuGlyPheValPheLeuGlnIleLeuProGlnIleLeuGlyIleIleSerProL 130406 : CTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAATTTTAGGCATAATTTCACCTC : 130349 154 : euValAsnLysSerGluSerTyrArgLysIleTyrIleArgThrGluTyrPheValAs : 172 ||..!.!.! !:! !:! |||:!! !:!!|||||||||||||||||||| euThrGluIleAsnThrAsn------LysLeuLeuValArgThrGluTyrPheValAs 130348 : TAACCGAGATCAATACTAAC------AAATTACTCGTTCGAACCGAATACTTTGTCGA : 130298 173 : pGluGluLysTyrPheTyrPheIleLeuLeuHisLeuTyrAlaAlaGlnTyrIleAla : 191 | ! :!! ! |||.!!|||.!.||| !:!!||| ! ! !||| ! !::! pTyrLysAspTyrIleTyrLeuIleThrIleHisAlaThrIleAlaIleMetCysSer 130297 : CTACAAAGATTACATTTATCTAATCACGATCCACGCGACTATAGCAATAATGTGTAGT : 130241 192 : ValGlyThrLeuIleGlyAlaGlyIleLeuValThrGlyTyrSerThrTyrPheCysG : 211 ||| !! !! !|||.!!::!! !|||||| ... ::: !! !:!!.!! !!| ValThrMetGlnIleSerSerAspIleLeuAsnAsnIlePheMetMetHisIleSerG 130240 : GTGACTATGCAAATTAGCAGCGATAttttgaataacatatttatGATGCACATCAGTG : 130181 212 : lyLeuPheAsnIle : 215 ||:!!|||.!.:!! lyMetPheGluVal 130180 : GAATGTTCGAGGTA : 130167 vulgar: CbirOr406 133 215 . KQ414817.1 130406 130166 - 108 M 26 78 G 2 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130167 130406 108 - . gene_id 1 ; sequence CbirOr406 ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130167 130406 . - . KQ414817.1 exonerate:protein2genome:local exon 130167 130406 . - . insertions 0 ; deletions 2 KQ414817.1 exonerate:protein2genome:local similarity 130167 130406 108 - . alignment_id 1 ; Query CbirOr406 ; Align 130407 134 78 ; Align 130329 162 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr400 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 324 -> 396 Target range: 128590 -> 128300 325 : ThrAspHisTyrAsnTyrIlePheSerThrAlaTyrAsnValValTrpTyrThrAlaP : 344 |||..! !!:!::! ! !!!.!!! !::!||| !!.! !||||||! !|||| ThrSerCysPheSerIleProLeuThrPheSerTyrCysAlaLysTrpTyrLysAlaP 128590 : ACATCTTGTTTCTCTATTCCTTTAACATTTAGCTATTGTGCAAAATGGTACAAAGCCC : 128533 345 : roValCysValGlnLysLeuIleLeuPheLeuLeuGlnArgSerSerLysProTyrGl : 363 ||||| ||||||::::!!|||||||||:!!!!.|||! !! !:!!|||! ! ! roValLysSerGlnLysMetLeuLeuPheLeuMetHisArgPheMetGluProCysAr 128532 : CAGtaaaatctcaaaaaatgCTACTGTTCCTCATGCACAGATTCATGGAACCGTGCAG : 128476 364 : yLeuLysPheGlyGlyLeuTyrIleThrSerLeuGluSerPheAlaSer >>>> Ta : 380 !||||||.!. !..!||| ! !.!!.!! !|||! !!:!|||!!! gLeuLysLeuLysSerLeuValAlaAlaGlyAsnGluLeuTyrAlaThr++ 128475 : GCTAAAACTGAAATCCTTAGTTGCCGCGGGTAACGAGTTGTACGCTACCgt....... : 128423 381 : rget Intron 1 >>>> IleSerThrAlaSerMetSerTyrPheThrValMetTy : 392 74 bp :!: ! !.!!.!!.!.|||||||||||||||:!:|| ++MetValGlnThrGlyPheSerTyrPheThrValLeuTy 128422 : ..................agaTGGTGCAGACTGGTTTCTCCTACTTTACGGTTCTCTA : 128315 393 : rSerIleGlnLys : 396 ||||:!:|||:!! rSerLeuGlnGlu 128314 : CTCGTTGCAAGAA : 128301 vulgar: CbirOr400 324 396 . KQ414817.1 128590 128300 - 115 M 55 165 5 0 2 I 0 70 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128301 128590 115 - . gene_id 1 ; sequence CbirOr400 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128590 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128590 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128301 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128301 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128301 128590 115 - . alignment_id 1 ; Query CbirOr400 ; Align 128591 325 165 ; Align 128352 380 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr390PI(F) Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 232 -> 289 Target range: 128551 -> 128303 233 : ThrLysTrpTyrIleAlaProLeuGlnThrGlnLysLeuIleLeuPheLeuLeuHisI : 252 .!!|||||||||! !||||||:::::::::||||||::::!!|||||||||:!!|||! AlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheLeuMetHisA 128551 : GCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCCTCATGCACA : 128494 253 : leAsnAsnLysProPheThrLeuAsnIleArgGlyIleLeuAlaSer<->MetGluCy : 270 ! !! :!!|||! !! !|||!!.:!:!:!..!:!!:!!|||:!! ! |||! rgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGlyAsnGluLe 128493 : GATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGGTAACGAGTT : 128437 271 : sPheSerThr >>>> Target Intron 1 >>>> LeuMetLysThrSerIleS : 280 !:!:!!||| 74 bp :!!:!!:!!|||.!!.!!| uTyrAlaThr++ ++MetValGlnThrGlyPheS 128436 : GTACGCTACCgt.........................agaTGGTGCAGACTGGTTTCT : 128333 281 : erTyrPheThrValIleTyrSerMetGln : 289 ||||||||||||||:!!||||||:!!||| erTyrPheThrValLeuTyrSerLeuGln 128332 : CCTACTTTACGGTTCTCTACTCGTTGCAA : 128304 vulgar: CbirOr390PI(F) 232 289 . KQ414817.1 128551 128303 - 119 M 35 105 G 0 3 M 6 18 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128304 128551 119 - . gene_id 1 ; sequence CbirOr390PI(F) ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128551 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128551 . - . insertions 3 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128304 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128304 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128304 128551 119 - . alignment_id 1 ; Query CbirOr390PI(F) ; Align 128552 233 105 ; Align 128444 268 18 ; Align 128352 274 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr425PC Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 120 -> 212 Target range: 130439 -> 130166 121 : PheThrIleIleLeuIlePheIleLeuValCysTyrLeuIleSerPheAsnMetLeuP : 140 |||:!!||||||! !:!:||| !!!!:!! |||:!!.!!||| !.!.|||! PheSerIleIleProValPheSerPheLeu---LeuLeuLeuGlyPheValPheLeuG 130439 : TTTTCCATTATTCCAGTGTTCTCATTTTTG---CTACTCCTTGGTTTCGTTTTCTTGC : 130385 141 : roValValProTyrPheLeuAspIleIleLeuArgLeuAsnLysSerAsnLeuProMe : 159 !:!!:!!||| ! .!!|||! !||||||! !! !|||!.!:!!! !||| ! !! lnIleLeuProGlnIleLeuGlyIleIleSerProLeuThrGluIleAsnThrAsnLy 130384 : AAATTCTCCCGCAAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAACAA : 130328 160 : tGlnPheIleLeuThrGluTyrPheValAspGlnGluLysTyrLeuTyrLeuIleLeu : 178 !.!!:!!! !|||||||||||||||||| ! :!! ! |||:!!||||||||| ! sLeuLeuValArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThr 130327 : ATTACTCGTTCGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACG : 130271 179 : LeuHisThrAsnValAlaPheSerIleArgGlyThrValPheAlaAlaIleGlyLeuM : 198 :!!|||.!!!.!:!!|||.!.! ! !!!!! !|||:!! !::!! !! !:::: IleHisAlaThrIleAlaIleMetCysSerValThrMetGlnIleSerSerAspIleL 130270 : ATCCACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttt : 130211 199 : etLeuLeuLeuTyrValGluHisGlyCysGlyIlePheGlnLeu : 212 :: ::::::::! !||| ! !!|||!!:|||:!!:!! euAsnAsnIlePheMetMetHisIleSerGlyMetPheGluVal 130210 : tgaataacatatttatGATGCACATCAGTGGAATGTTCGAGGTA : 130167 vulgar: CbirOr425PC 120 212 . KQ414817.1 130439 130166 - 121 M 10 30 G 1 0 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130167 130439 121 - . gene_id 1 ; sequence CbirOr425PC ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130167 130439 . - . KQ414817.1 exonerate:protein2genome:local exon 130167 130439 . - . insertions 0 ; deletions 1 KQ414817.1 exonerate:protein2genome:local similarity 130167 130439 121 - . alignment_id 1 ; Query CbirOr425PC ; Align 130440 121 30 ; Align 130410 132 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr425PC Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 129 -> 213 Target range: 1635 -> 1887 130 : ValCysTyrLeuIleSerPheAsnMetLeuProValValProTyrPheLeuAspIleIleLe : 150 :!! !! !:!!||| !||| ! !||||||..!|||:!!.!!|||||||||:!!|| IleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLe 1636 : ATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACT : 1696 151 : uArgLeuAsnLysSerAsnLeuProMetGlnPheIleLeuThrGluTyrPheValAspGlnG : 171 |! ! !|||:!!|||... ! ! ! ! .!! !! !.!! ! ||||||..!|||:!!. uProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluH 1697 : ACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGC : 1759 172 : luLysTyrLeuTyrLeuIleLeuLeuHisThrAsnValAlaPheSerIleArgGlyThrVal : 191 !.|||||| ! ! !|||:!! !|||! ! !!.!.!! !:!: ! ! !||| isLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrVal 1760 : ATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTG : 1819 192 : PheAlaAlaIleGlyLeuMetLeuLeuLeuTyrValGluHisGlyCysGlyIlePheGlnLe : 212 !:! !||| !! ! !! ! !:!!! ! !|||:!!||||||||||||:!:!!. :! TyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaVa 1820 : TACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGT : 1882 213 : uAla : 213 !:!! lSer 1883 : GTCC : 1887 vulgar: CbirOr425PC 129 213 . KQ414921.1 1635 1887 + 107 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1636 1887 107 + . gene_id 1 ; sequence CbirOr425PC ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1636 1887 . + . KQ414921.1 exonerate:protein2genome:local exon 1636 1887 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1636 1887 107 + . alignment_id 1 ; Query CbirOr425PC ; Align 1636 130 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr404 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 326 -> 393 Target range: 13644 -> 13915 327 : AspIlePheSerThrAlaTyrAsnIleArgTrpTyrIleThrProValArgValGlnArg : 346 ..!:!! ! !!! !::!!:!::! !:!||||||! !.!!||||||!:! !|||!:! SerLeuValThrArgSerPheSerGlyLysTrpTyrThrAlaProValLysSerGlnLys 13645 : TCTCTTGTAACACGTAGCTTTTCTGGGAAATGGTACACAGCGCCGGTAAAATCCCAGAAA : 13702 347 : LeuIleLeuPheLeuLeuGlnArgGlyThrLysProTyrGlyIleLysLeuGlyGlyLeu : 366 !:!!|||||||||:!!|||!:! !! !||||||! ! !|||:!!:!! !..! ! ThrValLeuPheLeuMetGlnLysPheIleLysProCysLysIleGluValIleSerThr 13703 : ACGGTTCTGTTCCTCATGCAGAAATTCATAAAACCGTGCAAGATAGAAGTTATATCCACG : 13762 367 : TyrThrLeuSerLeuGluAsnPheAlaSer >>>> Target Intron 1 >>>> L : 377 .!! !.!! !|||!..!:!|||||| 70 bp : ValAlaAlaGlySerGluThrTyrAlaSer++ ++I 13763 : GTGGCCGCAGGTAGCGAGACGTACGCGAGCgt.........................agA : 13865 378 : euSerThrAlaSerIleSerTyrPheThrIleIleTyrSerLeuGlnLys : 393 !! ! ! !.!!.!!|||||||||! !:!!:!!||||||||||||:!! leValGlnIleGlyPheSerTyrPheMetValLeuTyrSerLeuGlnGlu 13866 : TTGTGCAGATCGGTTTCTCCTACTTCATGGTTCTCTACTCGTTGCAAGAA : 13915 vulgar: CbirOr404 326 393 . KQ415081.1 13644 13915 + 101 M 50 150 5 0 2 I 0 66 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 13645 13915 101 + . gene_id 1 ; sequence CbirOr404 ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 13645 13794 . + . KQ415081.1 exonerate:protein2genome:local exon 13645 13794 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 13795 13796 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 13795 13864 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 13863 13864 . + . intron_id 0 ; splice_site "aG" KQ415081.1 exonerate:protein2genome:local cds 13865 13915 . + . KQ415081.1 exonerate:protein2genome:local exon 13865 13915 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 13645 13915 101 + . alignment_id 1 ; Query CbirOr404 ; Align 13645 327 150 ; Align 13865 377 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr419 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 116 -> 214 Target range: 32452 -> 32743 117 : AsnThrAlaLysArgTyrThrThrValLeuIleLeuLeuValMetCysSerLeuPheLeu : 136 !.!||| ::: ::: :!! !! ! !!!!||| !.!!:!!|||! ! ThrThrLeuArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSer 32453 : ACTACtctccgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCC : 32510 137 : LeuProPheLeuProLeuSerThrArgIleLeuGlyThrPheLeuHisLeuAsnGluSer : 156 ! ! !!.!.:!!! !!!! ! !! !|||:!!! !..!.!. !! !|||||||||||| TyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSer 32511 : TACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCC : 32570 157 : GlnGlnTyrArgLysLeuTyrIleValThrGluTyrPheValAspGlnGlnLysAsnPhe : 176 !:!!!.:!! ! !! !||| !.! !|||||||||||||||||||||||| ||| ArgHisHisValLeuProTyr---AlaGlyGluTyrPheValAspGlnGlnLysTyrPhe 32571 : CGACACCATGTACTGCCGTAC---GCCGGCGAATATTTCGTCGACcagcaaaaatatttc : 32627 177 : TyrPheIleLeuLeuHisMetTyrAlaAlaThrTyrIleGluMetThrAlaLeuIleGly : 196 ||| !||||||||| !!.!.!!..! !:!!! :!!|||!.! !! !.! LeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAla 32628 : ctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCT : 32687 197 : ProGlyAlaLeuIleIleGlyTyrLeuLysHisIleCysGlyMetPheLysIle : 214 ::::::...||| :::::! |||:!!|||!.!! |||!!.||| ValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32688 : GtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr419 116 214 . KQ415081.1 32452 32743 + 100 M 47 141 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32453 32743 100 + . gene_id 1 ; sequence CbirOr419 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32453 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32453 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32453 32743 100 + . alignment_id 1 ; Query CbirOr419 ; Align 32453 117 141 ; Align 32594 165 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr407PSE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 309 -> 375 Target range: 13647 -> 13915 310 : IlePheSerSerAlaTyrAsnValArgTrpTyrValAlaProValCysValGlnArgLeu : 329 :!! ! !!! !!::!!:!::!! !!:!||||||..!||||||||| !|||!:! ! LeuValThrArgSerPheSerGlyLysTrpTyrThrAlaProValLysSerGlnLysThr 13648 : CTTGTAACACGTAGCTTTTCTGGGAAATGGTACACAGCGCCGGTAAAATCCCAGAAAACG : 13705 330 : IleLeuPheLeuLeuGlnLysGlyThrLysProTyrArgMetLysPheGlyGlyLeuTyr : 349 :!!|||||||||:!!|||||| !! !||||||! !!:!!!::!! !! !..! ! ValLeuPheLeuMetGlnLysPheIleLysProCysLysIleGluValIleSerThrVal 13706 : GTTCTGTTCCTCATGCAGAAATTCATAAAACCGTGCAAGATAGAAGTTATATCCACGGTG : 13765 350 : ThrThrSerLeuGluAsnPheAlaSer >>>> Target Intron 1 >>>> LeuS : 360 .!!.!!.!! !|||!..!:!|||||| 70 bp :!! AlaAlaGlySerGluThrTyrAlaSer++ ++IleV 13766 : GCCGCAGGTAGCGAGACGTACGCGAGCgt.........................agATTG : 13868 361 : erThrValSerIleSerTyrPheThrValIleTyrSerIleGlnLys : 375 ! !:!!.!!.!!|||||||||! !|||:!!||||||:!:|||:!! alGlnIleGlyPheSerTyrPheMetValLeuTyrSerLeuGlnGlu 13869 : TGCAGATCGGTTTCTCCTACTTCATGGTTCTCTACTCGTTGCAAGAA : 13915 vulgar: CbirOr407PSE 309 375 . KQ415081.1 13647 13915 + 108 M 49 147 5 0 2 I 0 66 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 13648 13915 108 + . gene_id 1 ; sequence CbirOr407PSE ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 13648 13794 . + . KQ415081.1 exonerate:protein2genome:local exon 13648 13794 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 13795 13796 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 13795 13864 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 13863 13864 . + . intron_id 0 ; splice_site "aG" KQ415081.1 exonerate:protein2genome:local cds 13865 13915 . + . KQ415081.1 exonerate:protein2genome:local exon 13865 13915 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 13648 13915 108 + . alignment_id 1 ; Query CbirOr407PSE ; Align 13648 310 147 ; Align 13865 359 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr402PSE(S) Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 119 -> 214 Target range: 32461 -> 32743 120 : LysCysPheAlaIleValPheThrLeuLeuThrIleCysGlyLeuPheIleLeuThrLeu : 139 ::: ||| ::::!! !||| !!!!..! ! !|||:!!||| !! !.!!:!! ArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIle 32462 : cgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATA : 32519 140 : LeuProPheLeuProArgIlePheSerIlePheSerLeuValAsnGluSerLysSerTyr : 159 :!!! !||||||||| !|||.!!..!:!:.!.:!!! !:!!|||||||||::! !:!! ValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHis 32520 : GTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCAT : 32579 160 : CysAsnIleTyrIleArgThrGluTyrPheValAspGlnGluLysTyrPheTyrPheIle : 179 ||| ! !||||||||||||||||||:::||||||||| ||| ValLeuProTyr---AlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIle 32580 : GTACTGCCGTAC---GCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATC : 32636 180 : LeuLeuHisLeuTyrValAlaGlnTyrIleThrGlyGlyIleLeuLeuGlyAlaAlaIle : 199 !||||||:!! !! !.!! !:!! ! ! !:!! ! !!.!!.. AlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSer 32637 : GCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattca : 32696 200 : LeuLeuAlaGlyTyrIleThrTyrPheCysGlyLeuPheAsnIle : 214 :::... :::::: !:!! !!|||!.! !||||||||| IlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32697 : attttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr402PSE(S) 119 214 . KQ415081.1 32461 32743 + 109 M 44 132 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32462 32743 109 + . gene_id 1 ; sequence CbirOr402PSE(S) ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32462 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32462 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32462 32743 109 + . alignment_id 1 ; Query CbirOr402PSE(S) ; Align 32462 120 132 ; Align 32594 165 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr410PI Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 294 -> 351 Target range: 38505 -> 38748 295 : LysTrpTyrThrAlaSerValArgValGlnArgLeuIleLeuIleLeuLeuGlnIleSer : 314 ::!|||||| !||| !!:!!!:!:!!|||!:!|||:!!||||||:!!:!!.!.! !||| ArgTrpTyrAspAlaProLeuLysIleGlnLysLeuValLeuIleIleMetAsnArgSer 38506 : CGATGGTACGACGCGCCTCTAAAAATACAGAAACTAGTACTGATCATAATGAACAGAAGC : 38563 315 : AlaLysProTyrGlyLeuAsnValSerGlyLeuPheIleThrSerLeuGluAsnPheAla : 334 !:!!||| ||||||..!:!!.!!! !! ! ...::::::|||||||||::: PheGluProValGlyLeuArgIleGlyAspTyrGlnAspValThrIleGluAsnPheSer 38564 : TTCGAACCAGTAGGCCTCCGTATTGGCGATTACCAGGAcgtaacaattgaaaatttctca : 38623 335 : Ser >>>> Target Intron 1 >>>> LeuSerSerValSerMetSerTyrPheT : 345 ||| 72 bp :!!! !..!||||||.!.|||! |||! Ser++ ++IleIleGlnValSerPheSerSerPheM 38624 : tcCgt.........................agATAATTCAAGTGAGCTTCTCGTCGTTCA : 38728 346 : hrIleLeuTyrSerIleGln : 351 !:!!|||||||||:!!||| etValLeuTyrSerLeuGln 38729 : TGGTACTCTACTCTCTACAA : 38748 vulgar: CbirOr410PI 294 351 . KQ415081.1 38505 38748 + 108 M 41 123 5 0 2 I 0 68 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 38506 38748 108 + . gene_id 1 ; sequence CbirOr410PI ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 38506 38628 . + . KQ415081.1 exonerate:protein2genome:local exon 38506 38628 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 38629 38630 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 38629 38700 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 38699 38700 . + . intron_id 0 ; splice_site "AG" KQ415081.1 exonerate:protein2genome:local cds 38701 38748 . + . KQ415081.1 exonerate:protein2genome:local exon 38701 38748 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 38506 38748 108 + . alignment_id 1 ; Query CbirOr410PI ; Align 38506 295 123 ; Align 38701 336 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr412PC Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 126 -> 213 Target range: 32485 -> 32743 127 : GlyPheArgThrCysThrAlaPheGlyAsnSerIleIleLeuCysLeuProTyrIleLeu : 146 |||||| ! ! ! ! !|||..! !!:!!|||:!:! !! !||||||||||||:!! GlyPheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIle 32486 : GGATTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATC : 32543 147 : AspIleValMetProLysAsnGluSerTyrGlyIleTyrIleMetGluIleMetThrLys : 166 |||:!::!! !||| !||||||||| ! :!!:!!:!! ! ! !:!! AspValIleAlaProLeuAsnGluSerArgHis---HisValLeuProTyrAlaGlyGlu 32544 : GACGTGATAGCGCCTCTAAACGAATCCCGACAC---CATGTACTGCCGTACGCCGGCGAA : 32600 167 : TyrPheIleValSerGluLysTyrTyrTyrLeuIlePheThrTyrLeuAsnIleSerCys : 186 ||||||:!!! !...:::||||||::: !||| !:!!:!! ! !!! ! TyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrVal 32601 : TATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTT : 32660 187 : SerAlaGlyIleIleAlaTyrValAlaThrThrThrMetPheIleSerPhePheLysHis : 206 !!! !|||:!:! !.! !..!|||... ::::::|||||| |||... ||| ThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHis 32661 : ACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCAC : 32720 207 : IleCysGlyMetPheGluIle : 213 :!!|||!.!! |||.!.||| ValCysAlaLysPheAsnIle 32721 : GTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr412PC 126 213 . KQ415081.1 32485 32743 + 121 M 31 93 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32486 32743 121 + . gene_id 1 ; sequence CbirOr412PC ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32486 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32486 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32486 32743 121 + . alignment_id 1 ; Query CbirOr412PC ; Align 32486 127 93 ; Align 32579 159 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr395PI(FS) Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 287 -> 352 Target range: 38481 -> 38748 288 : IlePheSerThrAlaTyrAsnValArgTrpTyrAspAlaProIleArgValGlnArgLeu : 307 |||!!.! !..! !!:! !! !||||||||||||||||||:!!!:!:!!|||!:!||| IleLeuPheValArgPheTyrSerArgTrpTyrAspAlaProLeuLysIleGlnLysLeu 38482 : ATATTGTTCGTCAGGTTTTATTCACGATGGTACGACGCGCCTCTAAAAATACAGAAACTA : 38539 308 : IlePhePheLeuLeuGlnArgGlyThrMetSerTyrAlaMetLysPheGlyGlyValTyr : 327 :!!.!..!!:!!:!!.!.|||.!! ! !! !.!:!::::.!!|||! ! ! ! ValLeuIleIleMetAsnArgSerPheGluProValGlyLeuArgIleGlyAspTyrGln 38540 : GTACTGATCATAATGAACAGAAGCTTCGAACCAGTAGGCCTCCGTATTGGCGATTACCAG : 38599 328 : ThrLeuSerLeuGluAsnPheAlaThr >>>> Target Intron 1 >>>> LeuS : 338 :::::::::|||||||||:::::! 72 bp :!!! AspValThrIleGluAsnPheSerSer++ ++IleI 38600 : GAcgtaacaattgaaaatttctcatcCgt.........................agATAA : 38704 339 : erThrAlaSerIleSerTyrPheThrValIleTyrSerIleGln : 352 ! !!.!|||.!!|||! |||! !|||:!!||||||:!!||| leGlnValSerPheSerSerPheMetValLeuTyrSerLeuGln 38705 : TTCAAGTGAGCTTCTCGTCGTTCATGGTACTCTACTCTCTACAA : 38748 vulgar: CbirOr395PI(FS) 287 352 . KQ415081.1 38481 38748 + 105 M 49 147 5 0 2 I 0 68 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 38482 38748 105 + . gene_id 1 ; sequence CbirOr395PI(FS) ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 38482 38628 . + . KQ415081.1 exonerate:protein2genome:local exon 38482 38628 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 38629 38630 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 38629 38700 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 38699 38700 . + . intron_id 0 ; splice_site "AG" KQ415081.1 exonerate:protein2genome:local cds 38701 38748 . + . KQ415081.1 exonerate:protein2genome:local exon 38701 38748 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 38482 38748 105 + . alignment_id 1 ; Query CbirOr395PI(FS) ; Align 38482 288 147 ; Align 38701 337 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr425PC Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 120 -> 212 Target range: 32467 -> 32743 121 : PheThrIleIleLeuIlePheIleLeuValCysTyrLeuIleSerPheAsnMetLeuPro : 140 ||| :::||| !! ! .!!:!! ! ! :!!.!!|||!:! !!::!!! ! PhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIleValGln 32468 : tttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAA : 32525 141 : ValValProTyrPheLeuAspIleIleLeuArgLeuAsnLysSerAsnLeuProMetGln : 160 !!:!!||||||.!!:!!|||:!:||| !! !||||||:!!|||...! !! !:!:! ! PheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHisValLeu 32526 : TTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTG : 32585 161 : PheIleLeuThrGluTyrPheValAspGlnGluLysTyrLeuTyrLeuIleLeuLeuHis : 180 ! ! !||||||||||||||||||:::||||||... !||| !|||||| ProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHis 32586 : CCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCAC : 32645 181 : ThrAsnValAlaPheSerIleArgGlyThrValPheAlaAlaIleGlyLeuMetLeuLeu : 200 ! ! !! !.!! !!!!!:!! !! !|||||| !.!!|||::: :::...::: MetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIle 32646 : ATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcata : 32705 201 : LeuTyrValGluHisGlyCysGlyIlePheGlnLeu : 212 ...:::::! |||! !|||!.!! !|||.!.:!! PhePheMetPheHisValCysAlaLysPheAsnIle 32706 : ttcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr425PC 120 212 . KQ415081.1 32467 32743 + 117 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32468 32743 117 + . gene_id 1 ; sequence CbirOr425PC ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32468 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32468 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32468 32743 117 + . alignment_id 1 ; Query CbirOr425PC ; Align 32468 121 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr400 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 339 -> 381 Target range: 38508 -> 38634 340 : TrpTyrThrAlaProValCysValGlnLysLeuIleLeuPheLeuLeuGlnArgSerSer : 359 |||||| !||||||:!! :!!|||||||||:!!|||.!!:!!:!!.!.||||||! ! TrpTyrAspAlaProLeuLysIleGlnLysLeuValLeuIleIleMetAsnArgSerPhe 38509 : TGGTACGACGCGCCTCTAAAAATACAGAAACTAGTACTGATCATAATGAACAGAAGCTTC : 38566 360 : LysProTyrGlyLeuLysPheGlyGlyLeuTyrIleThrSerLeuGluSerPheAlaSer : 379 :!!||| ||||||:::.!!|||! !! ! ! ...::::::|||:::|||:::||| GluProValGlyLeuArgIleGlyAspTyrGlnAspValThrIleGluAsnPheSerSer 38567 : GAACCAGTAGGCCTCCGTATTGGCGATTACCAGGAcgtaacaattgaaaatttctcatcC : 38626 380 : IleSer : 381 :!!||| ValSer 38627 : GTAAGT : 38634 vulgar: CbirOr400 339 381 . KQ415081.1 38508 38634 + 107 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 38509 38634 107 + . gene_id 1 ; sequence CbirOr400 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 38509 38634 . + . KQ415081.1 exonerate:protein2genome:local exon 38509 38634 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 38509 38634 107 + . alignment_id 1 ; Query CbirOr400 ; Align 38509 340 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr400 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 154 -> 217 Target range: 11310 -> 11499 155 : LeuValAsnLysSerGluSerHisHisArgAsnThrTyrIleMetThrGluTyrPheVal : 174 :!!..!::!::!!:!|||!!!... !!.!..! ! :!!:!:||||||||||||||| IleThrSerArgAsnGluThrArgAlaAsnGlyLeuIleValLeuThrGluTyrPheVal 11311 : ATCACATCTCGAAACGAGACCAGAGCTAATGGCTTGATAGTTTTAACCGAATACTTCGTT : 11368 175 : AspGlnGluLysHisPheTyrPheIleLeuLeuHisLeuTyrSerAlaLeuPheIleAla : 194 ||| ! |||:!!:!!.!!||| ||| ! !|||:!! ! !!.!:!!|||!!:!.! AspTyrGluGlnTyrIleTyrProIleThrThrHisValValValGlyIlePheMetGly 11369 : GATTACGAGCAATACATTTATCCAATTACGACCCACGTGGTTGTAGGAATTTTTATGGGT : 11428 195 : ValAlaThrLeuLeuGlyThrAlaIleLeuMetThrGlyTyrPheIleHisPheCysGly : 214 !!|||! !! !:!!|||!:!! !:!!|||! ! ! !!:!.!.!!:||| !! !!||| PheAlaIleGlnIleGlySerAspLeuLeuAsnMetIlePheMetMetHisValSerGly 11429 : TTTGCTATTCAAATTGGCAGCGATCTTTTGAATATGATATTTATGATGCACGTCAGTGGA : 11488 215 : LeuPheAsn : 217 :!!|||:!! MetPheAsp 11489 : ATGTTCGAC : 11499 vulgar: CbirOr400 154 217 . KQ415081.1 11310 11499 + 104 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 11311 11499 104 + . gene_id 2 ; sequence CbirOr400 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 11311 11499 . + . KQ415081.1 exonerate:protein2genome:local exon 11311 11499 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 11311 11499 104 + . alignment_id 2 ; Query CbirOr400 ; Align 11311 155 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr398PSE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 121 -> 201 Target range: 32503 -> 32743 122 : LeuIleIlePheThrLeuLeuProIleLeuProArgIlePheArgIlePhePheValVal : 141 :!!.!! !!:!.!!:!!:!!! !.!!|||||| !|||.!! !:!:.!. !:!! IlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeu 32504 : ATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTA : 32561 142 : AsnLysSerGluProPheArgAsnValTyrIleThrGluTyrPheValAspGluGluLys : 161 |||:!!|||..!! ! ! ! !||| ! !|||||||||||||||::::::||| AsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLys 32562 : AACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaa : 32621 162 : TyrPheTyrPheIleLeuLeuHisMetTyrAlaThrGlnTyrIleAlaGlyGlyThrLeu : 181 |||||| ||| !||||||||| !!.!||| !:!!!.! ! !..! ! TyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAla 32622 : tatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCC : 32681 182 : LeuAlaAlaGlyIleValValMetGlyTyrLeuThrCysValCysGlyLeuPheAsnIle : 201 !|||!.. ::: ::: :::::! ! !||||||!.! !||||||||| ThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32682 : ACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32741 vulgar: CbirOr398PSE 121 201 . KQ415081.1 32503 32743 + 107 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32504 32743 107 + . gene_id 1 ; sequence CbirOr398PSE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32504 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32504 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32504 32743 107 + . alignment_id 1 ; Query CbirOr398PSE ; Align 32504 122 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr405PN Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 85 -> 166 Target range: 32503 -> 32743 86 : LeuIleIlePheThrLeuValProIleLeuProArgIlePheAspIlePhePheLeuVal : 105 :!!.!! !!:!.!!:!!|||! !.!!|||||| !|||.!!|||:!:.!. ! !:!! IlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeu 32504 : ATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTA : 32561 106 : AsnLysSerGluProTyrArgTyrIleTyrMetLysThrGluTyrPheIleAspGlnGlu : 125 |||:!!|||..!! !:!! ! ||| !|||||||||:!!||||||::: AsnGluSerArgHisHisValLeuProTyr---AlaGlyGluTyrPheValAspGlnGln 32562 : AACGAATCCCGACACCATGTACTGCCGTAC---GCCGGCGAATATTTCGTCGACcagcaa : 32618 126 : LysTyrPheTyrPheIleLeuLeuHisLeuTyrAlaValLeuTyrIleGlyGlyAlaThr : 145 ||||||||| ||| !||||||:!! !!.!..!:!! !:!!||| !.!!..! LysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrVal 32619 : aaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTC : 32678 146 : LeuValValAlaGlyIleValLeuThrGlyTyrPheThrTyrPheCysGlyLeuPheAsn : 165 !..!!.!!.. :::... :::... !:!! !!|||!.! !|||||| AlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsn 32679 : GCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAAT : 32738 166 : Ile : 166 ||| Ile 32739 : ATT : 32743 vulgar: CbirOr405PN 85 166 . KQ415081.1 32503 32743 + 102 M 30 90 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32504 32743 102 + . gene_id 1 ; sequence CbirOr405PN ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32504 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32504 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32504 32743 102 + . alignment_id 1 ; Query CbirOr405PN ; Align 32504 86 90 ; Align 32594 117 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr425PC Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 129 -> 213 Target range: 211 -> 463 130 : ValCysTyrLeuIleSerPheAsnMetLeuProValValProTyrPheLeuAspIleIleLeuA : 151 :!! !! !:!!||| !||| ! !||||||..!|||:!!.!!|||||||||:!!|||! IleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuP 212 : ATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTAC : 275 152 : rgLeuAsnLysSerAsnLeuProMetGlnPheIleLeuThrGluTyrPheValAspGlnGluLy : 172 ! !|||:!!|||... ! ! ! ! .!! !! !.!! ! ||||||..!|||:!!.!.|| roLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLy 276 : CGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAA : 338 173 : sTyrLeuTyrLeuIleLeuLeuHisThrAsnValAlaPheSerIleArgGlyThrValPheAla : 193 |||| ! ! !|||:!! !|||! ! !!.!.!! !:!: ! ! !|||!:! ! sTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrPhe 339 : GTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTC : 401 194 : AlaIleGlyLeuMetLeuLeuLeuTyrValGluHisGlyCysGlyIlePheGlnLeuAla : 213 ||| !! ! !! ! !:!!! ! !|||:!!||||||||||||:!:!!. :!!:!! AlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSer 402 : GCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCC : 463 vulgar: CbirOr425PC 129 213 . LHQN01023902.1 211 463 + 107 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 212 463 107 + . gene_id 1 ; sequence CbirOr425PC ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 212 463 . + . LHQN01023902.1 exonerate:protein2genome:local exon 212 463 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 212 463 107 + . alignment_id 1 ; Query CbirOr425PC ; Align 212 130 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr398PSE Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 123 -> 213 Target range: 5002 -> 5272 124 : IlePheThrLeuLeuProIleLeuProArgIlePheArgIlePhePheValValAsnLysSe : 144 :!!|||! !! !||||||.!!:!! !!! !|||.!. !|||.!!.!. !:!!|||:!!!! LeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluTh 5003 : CTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGAC : 5063 145 : rGluProPheArgAsnValTyrIleThrGluTyrPheValAspGluGluLysTyrPheTyrP : 165 !..! !! ! !|||||| !.!! ! |||||||||||||||!!:|||||| !|||! rArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrL 5064 : GCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACT : 5126 166 : heIleLeuLeuHisMetTyrAlaThrGlnTyrIleAlaGlyGlyThrLeuLeuAlaAlaGly : 185 !.|||:!! !||||||||| !..! ! !!: ! !..!..!!!!! !|||..!! ! euIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAsp 5127 : TGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGAT : 5186 186 : IleValValMetGlyTyrLeuThrCysValCysGlyLeuPheAsnIleAlaSerTyrArgIl : 206 ! ! !:!! ! !:!! ! !!.!|||||||||!!. !||||||.!!!! !:! AlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***LeuVa 5187 : GCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGT : 5249 207 : eGluGlnAlaMetLeuLeuAsn : 213 !:!! ! !:!::!! !||| lGlnGlyGlnLeuMetGluAsn 5250 : TCAAGGACAATTAATGGAAAAT : 5272 vulgar: CbirOr398PSE 123 213 . LHQN01025741.1 5002 5272 + 104 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5003 5272 104 + . gene_id 1 ; sequence CbirOr398PSE ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5003 5272 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5003 5272 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5003 5272 104 + . alignment_id 1 ; Query CbirOr398PSE ; Align 5003 124 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr409 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 134 -> 239 Target range: 11489 -> 11801 135 : AlaLeuIleLeuCysLeuLeuProIleValProArgIleLeuGlyIlePheThrSerIle : 154 :!!!!!:!:!!! ! !:!!||| ..! !!|||:!::!!..! !:!! !!!! SerPheLeuPheIleGlnValProTrpThrThrArgLeuValAsnSerTyrLysThrGln 11490 : TCGTTCTTGTTCATACAAGTGCCATGGACGACCCGATTGGTGAACTCGTACAAGACACAG : 11547 155 : AsnValSerGluGluTyrPheMetIleHisValProArgGluTyrPheIleAspGlnGlu : 174 |||:!!!!! !...! .!.:!! :!!||| !! ! ||||||:!!|||:!!! ! AsnIleThrProSerLeuGlnPheVal---IleProGlyTyrTyrPheValAspGluVal 11548 : AATATAACGCCAAGTTTGCAATTCGTC---ATACCCGGATATTACTTCGTCGACGAAGTA : 11604 175 : LysTyrTyrTyrTyrIleLeuLeuHisMetGluAlaAsnPhePheIleGlyAlaIleVal : 194 :!!|||||||||||||||:!!|||||| !..!!.. !!!!.|||! !!.!:!:||| GluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeuIleValValValVal 11605 : GAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTG : 11664 195 : LeuLeuAlaThrGlyThrMetLeuPheGlyCysIleLysTyrIleCysGlyLeuPheArg : 214 ! !! !||| !! !|||! ! !.!.! ! :!::!!:!!! !|||||||||||| ! TyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAla 11665 : TACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCC : 11724 215 : IleAlaSerCysArgIleAspGlnThrMetGluThrSerMetPheGlnSerAlaGlyLeu : 234 :!:|||.!!!! ..!! ! ::: |||...|||!.!..!! ! ValAlaGly***GluAsnLeuArgAspThrPhePheLeuSerPheSerSerGlyAsnTyr 11725 : GTGGCCGGGTGAGAAAACTTGAGagatacattttttctctcattttcgtCGGGAAATTAT : 11784 235 : SerLysAspCysVal : 239 ! !::!||||||||| TyrArgAspCysVal 11785 : TATCGAGATTGCGTG : 11801 vulgar: CbirOr409 134 239 . LHQN01025741.1 11489 11801 + 121 M 29 87 G 1 0 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11490 11801 121 + . gene_id 1 ; sequence CbirOr409 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11490 11801 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11490 11801 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 11490 11801 121 + . alignment_id 1 ; Query CbirOr409 ; Align 11490 135 87 ; Align 11577 165 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr396CTE Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 141 -> 221 Target range: 11495 -> 11732 142 : PhePheMetGlyThrThrValLeuThrArgIleLeuArgThrPheThrSerThrAsnVal : 161 !!.|||!!: !..! !! ! !||||||:!::!!!.!:!!!:!! !!!! !|||:!! LeuPheIleGlnValProTrpThrThrArgLeuValAsnSerTyrLysThrGlnAsnIle 11496 : TTGTTCATACAAGTGCCATGGACGACCCGATTGGTGAACTCGTACAAGACACAGAATATA : 11553 162 : SerGluGluHisPheMetIleHisIleProThrGluTyrPheIleAsnGlnGluLysTyr : 181 !!! !... !!.....!! !|||||| ! ! ||||||:!!:!!:!!! !:!!||| ThrProSer---LeuGlnPheValIleProGlyTyrTyrPheValAspGluValGluTyr 11554 : ACGCCAAGT---TTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATAC : 11610 182 : TyrTyrTyrIleValLeuHisMetAspAlaSerValPheIleGlySerIleValLeuPro : 201 ||||||||||||:!!|||||| ..!!!!|||!!.|||! ! !:!:|||! ! ! TyrTyrTyrIleIleLeuHisGlyThrCysThrValLeuIleValValValValTyrCys 11611 : TATTATTACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGT : 11670 202 : AlaThrGlyThrLeuLeuPheGlyCysMetLysTyrMetCysGlyLeuPheArgIleAla : 221 ||| !! !||| !! !.!.! ! :!!:!!:!!! |||||||||||| !:!:||| AlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAla 11671 : GCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCC : 11730 vulgar: CbirOr396CTE 141 221 . LHQN01025741.1 11495 11732 + 113 M 23 69 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11496 11732 113 + . gene_id 1 ; sequence CbirOr396CTE ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11496 11732 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11496 11732 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 11496 11732 113 + . alignment_id 1 ; Query CbirOr396CTE ; Align 11496 142 69 ; Align 11565 166 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr409 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 162 -> 239 Target range: 1152 -> 921 163 : IleHisValProArgGluTyrPheIleAspGlnGluLysTyrTyrTyrTyrIleLeuLeuHi : 183 :!! !|||||| !! ! ||||||:!!|||:!!! !:!!|||||||||||||||:!!||||| ValValValProGlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHi 1152 : GTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCA : 1092 184 : sMetGluAlaAsnPhePheIleGlyAlaIleValLeuLeuAlaThrGlyThrMetLeuPheG : 204 | !..!!.. !!!!.|||! !!.!:!:|||! !! !||| !! !|||! ! !.!.! sGlyThrCysThrValLeuIleValValValValTyrCysAlaCysAspThrSerTyrMetV 1091 : CGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGG : 1029 205 : lyCysIleLysTyrIleCysGlyLeuPheArgIleAlaSerCysArgIleAspGlnThrMet : 224 ! :!::!!:!!! !|||||||||||| !:!:|||.!!!! ..!! ! ::: alLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly***GluAsnLeuArgAspThr 1028 : TACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGGTGAGAAAACTTGAGagataca : 969 225 : GluThrSerMetPheGlnSerAlaGlyLeuSerLysAspCysVal : 239 |||...|||!.!..!! !! ! !||||||||| PhePheLeuSerPheSerSerGlyAsnTyrTyr***AspCysVal 968 : ttttttctctcattttcgtCGGGAAACTATTATTGAGATTGCGTG : 922 vulgar: CbirOr409 162 239 . LHQN01027734.1 1152 921 - 116 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 922 1152 116 - . gene_id 1 ; sequence CbirOr409 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 922 1152 . - . LHQN01027734.1 exonerate:protein2genome:local exon 922 1152 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 922 1152 116 - . alignment_id 1 ; Query CbirOr409 ; Align 1153 163 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr396CTE Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 141 -> 221 Target range: 1227 -> 990 142 : PhePheMetGlyThrThrValLeuThrArgIleLeuArgThrPheThrSerThrAsnValSe : 162 !!.|||!!: !..! !! ! !||||||!!::!!!.!:!!!:!! !!!! !|||:!!!! LeuPheIleGlnValProTrpThrThrArgMetValAsnSerTyrLysThrGlnAsnIleTh 1227 : TTGTTCATACAAGTGCCATGGACGACCCGAATGGTGAACTCGTACAAGACACAGAATATAAC : 1167 163 : rGluGluHisPheMetIleHisIleProThrGluTyrPheIleAsnGlnGluLysTyrTyrT : 183 ! !... !!. :!! !:!!||| ! ! ||||||:!!:!!:!!! !:!!||||||| rProSer---LeuProValValValProGlyTyrTyrPheValAspGluValGluTyrTyrT 1166 : GCCAAGT---TTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATT : 1107 184 : yrTyrIleValLeuHisMetAspAlaSerValPheIleGlySerIleValLeuProAlaThr : 203 ||||||||:!!|||||| ..!!!!|||!!.|||! ! !:!:|||! ! !||| ! yrTyrIleIleLeuHisGlyThrCysThrValLeuIleValValValValTyrCysAlaCys 1106 : ATTACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 1047 204 : GlyThrLeuLeuPheGlyCysMetLysTyrMetCysGlyLeuPheArgIleAla : 221 ! !||| !! !.!.! ! :!!:!!:!!! |||||||||||| !:!:||| AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAla 1046 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCC : 991 vulgar: CbirOr396CTE 141 221 . LHQN01027734.1 1227 990 - 112 M 23 69 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 991 1227 112 - . gene_id 1 ; sequence CbirOr396CTE ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 991 1227 . - . LHQN01027734.1 exonerate:protein2genome:local exon 991 1227 . - . insertions 0 ; deletions 1 LHQN01027734.1 exonerate:protein2genome:local similarity 991 1227 112 - . alignment_id 1 ; Query CbirOr396CTE ; Align 1228 142 69 ; Align 1159 166 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr398PSE Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 123 -> 213 Target range: 5660 -> 5390 124 : IlePheThrLeuLeuProIleLeuProArgIlePheArgIlePhePheValValAsnLysSe : 144 :!!|||! !! !||||||.!!:!! !!! !|||.!. !|||.!!.!. !:!!|||:!!!! LeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluTh 5660 : CTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGAC : 5600 145 : rGluProPheArgAsnValTyrIleThrGluTyrPheValAspGluGluLysTyrPheTyrP : 165 !..! !! ! !|||||| !.!! ! |||||||||||||||!!:|||||| !|||! rArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrL 5599 : GCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACT : 5537 166 : heIleLeuLeuHisMetTyrAlaThrGlnTyrIleAlaGlyGlyThrLeuLeuAlaAlaGly : 185 !.|||:!! !||||||||| !..! ! !!: ! !..!..!!!!! !|||..!! ! euIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAsp 5536 : TGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGAT : 5477 186 : IleValValMetGlyTyrLeuThrCysValCysGlyLeuPheAsnIleAlaSerTyrArgIl : 206 ! ! !:!! ! !:!! ! !!.!|||||||||!!. !||||||.!!!! !:! AlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***LeuVa 5476 : GCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGT : 5414 207 : eGluGlnAlaMetLeuLeuAsn : 213 !:!! ! !:!::!! !||| lGlnGlyGlnLeuMetGluAsn 5413 : TCAAGGACAATTAATGGAAAAT : 5391 vulgar: CbirOr398PSE 123 213 . LHQN01028732.1 5660 5390 - 102 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5391 5660 102 - . gene_id 1 ; sequence CbirOr398PSE ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5391 5660 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5391 5660 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5391 5660 102 - . alignment_id 1 ; Query CbirOr398PSE ; Align 5661 124 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr410PI Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 139 -> 220 Target range: 463 -> 703 140 : IleIleThrPheSerLeuLeuProIleLeuProGlnIlePheGlyIlePheTyrLeuValAsnL : 161 :!!:!! !||| !!!!|||! !|||||||||||||||!!.||||||.!!! ! !:!!!.!: LeuLeuGlyPheValPheLeuGlnIleLeuProGlnIleLeuGlyIleIleSerProLeuThrG 464 : CTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAATTTTAGGCATAATTTCACCTCTAACCG : 527 162 : ysSerGluProTyrArgAsnIleTyrIleThrThrGluTyrPheValAspGlnGluLysAsnPh : 182 !!! !.!. !! !.!!!.:!! !:!! !|||||||||||||||||| ! :!! ! !!.! luIleAsnThr---AsnLysLeuLeuValArgThrGluTyrPheValAspTyrLysAspTyrIl 528 : AGATCAATACT---AACAAATTACTCGTTCGAACCGAATACTTTGTCGACTACAAAGATTACAT : 587 183 : eTyrPheIlePheLeuHisLeuTyrLeuSerHisTyrIleAlaValSerThrLeuValGlyThr : 203 !|||.!.||| :!!||| ! !:!!:!! !::!|||!!!! !! !:!!.!!!:! eTyrLeuIleThrIleHisAlaThrIleAlaIleMetCysSerValThrMetGlnIleSerSer 588 : TTATCTAATCACGATCCACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGC : 650 204 : GlyIleLeuIleThrGlyTyrPheIleHisPheCysGlyLeuPheAsnVal : 220 ! !|||||| ... :::...!!:|||.!! !!|||:!!|||.!.||| AspIleLeuAsnAsnIlePheMetMetHisIleSerGlyMetPheGluVal 651 : GATAttttgaataacatatttatGATGCACATCAGTGGAATGTTCGAGGTA : 703 vulgar: CbirOr410PI 139 220 . LHQN01050134.1 463 703 + 102 M 25 75 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 464 703 102 + . gene_id 1 ; sequence CbirOr410PI ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 464 703 . + . LHQN01050134.1 exonerate:protein2genome:local exon 464 703 . + . insertions 0 ; deletions 1 LHQN01050134.1 exonerate:protein2genome:local similarity 464 703 102 + . alignment_id 1 ; Query CbirOr410PI ; Align 464 140 75 ; Align 539 166 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr406 Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 133 -> 215 Target range: 463 -> 703 134 : LeuPheValPheThrLeuLeuProIleLeuProArgIlePheGlyIlePheSerLeuLeuValA : 155 |||.!!! !|||..!!!!|||! !|||||||||!:!|||!!.||||||.!!|||! !|||..!. LeuLeuGlyPheValPheLeuGlnIleLeuProGlnIleLeuGlyIleIleSerProLeuThrG 464 : CTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAATTTTAGGCATAATTTCACCTCTAACCG : 527 156 : snLysSerGluSerTyrArgLysIleTyrIleArgThrGluTyrPheValAspGluGluLysTy : 176 !.! !:! !:! |||:!! !:!!||||||||||||||||||||| ! :!! ! || luIleAsnThrAsn------LysLeuLeuValArgThrGluTyrPheValAspTyrLysAspTy 528 : AGATCAATACTAAC------AAATTACTCGTTCGAACCGAATACTTTGTCGACTACAAAGATTA : 584 177 : rPheTyrPheIleLeuLeuHisLeuTyrAlaAlaGlnTyrIleAlaValGlyThrLeuIleGly : 197 |.!!|||.!.||| !:!!||| ! ! !||| ! !::!||| !! !! !|||.!! rIleTyrLeuIleThrIleHisAlaThrIleAlaIleMetCysSerValThrMetGlnIleSer 585 : CATTTATCTAATCACGATCCACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGC : 647 198 : AlaGlyIleLeuValThrGlyTyrSerThrTyrPheCysGlyLeuPheAsnIle : 215 ::!! !|||||| ... ::: !! !:!!.!! !!|||:!!|||.!.:!! SerAspIleLeuAsnAsnIlePheMetMetHisIleSerGlyMetPheGluVal 648 : AGCGATAttttgaataacatatttatGATGCACATCAGTGGAATGTTCGAGGTA : 703 vulgar: CbirOr406 133 215 . LHQN01050134.1 463 703 + 108 M 26 78 G 2 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 464 703 108 + . gene_id 1 ; sequence CbirOr406 ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 464 703 . + . LHQN01050134.1 exonerate:protein2genome:local exon 464 703 . + . insertions 0 ; deletions 2 LHQN01050134.1 exonerate:protein2genome:local similarity 464 703 108 + . alignment_id 1 ; Query CbirOr406 ; Align 464 134 78 ; Align 542 162 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr425PC Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 120 -> 212 Target range: 430 -> 703 121 : PheThrIleIleLeuIlePheIleLeuValCysTyrLeuIleSerPheAsnMetLeuProValV : 142 |||:!!||||||! !:!:||| !!!!:!! |||:!!.!!||| !.!.|||! !:!!: PheSerIleIleProValPheSerPheLeu---LeuLeuLeuGlyPheValPheLeuGlnIleL 431 : TTTTCCATTATTCCAGTGTTCTCATTTTTG---CTACTCCTTGGTTTCGTTTTCTTGCAAATTC : 491 143 : alProTyrPheLeuAspIleIleLeuArgLeuAsnLysSerAsnLeuProMetGlnPheIleLe : 163 !!||| ! .!!|||! !||||||! !! !|||!.!:!!! !||| ! !! !.!!:!!! euProGlnIleLeuGlyIleIleSerProLeuThrGluIleAsnThrAsnLysLeuLeuValAr 492 : TCCCGCAAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAACAAATTACTCGTTCG : 554 164 : uThrGluTyrPheValAspGlnGluLysTyrLeuTyrLeuIleLeuLeuHisThrAsnValAla : 184 !|||||||||||||||||| ! :!! ! |||:!!||||||||| !:!!|||.!!!.!:!!||| gThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAlaThrIleAla 555 : AACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCGACTATAGCA : 617 185 : PheSerIleArgGlyThrValPheAlaAlaIleGlyLeuMetLeuLeuLeuTyrValGluHisG : 206 .!.! ! !!!!! !|||:!! !::!! !! !:::::: ::::::::! !||| IleMetCysSerValThrMetGlnIleSerSerAspIleLeuAsnAsnIlePheMetMetHisI 618 : ATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaataacatatttatGATGCACA : 683 207 : lyCysGlyIlePheGlnLeu : 212 ! !!|||!!:|||:!!:!! leSerGlyMetPheGluVal 684 : TCAGTGGAATGTTCGAGGTA : 703 vulgar: CbirOr425PC 120 212 . LHQN01050134.1 430 703 + 121 M 10 30 G 1 0 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 431 703 121 + . gene_id 1 ; sequence CbirOr425PC ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 431 703 . + . LHQN01050134.1 exonerate:protein2genome:local exon 431 703 . + . insertions 0 ; deletions 1 LHQN01050134.1 exonerate:protein2genome:local similarity 431 703 121 + . alignment_id 1 ; Query CbirOr425PC ; Align 431 121 30 ; Align 461 132 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr447PSE Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 164 -> 222 Target range: 357464 -> 357638 165 : GluSerTyrArgAsnIleTyrIleArgThrGluTyrPheValGluGluGluLysTyrP : 184 ||||||! ! !|||:!!|||.!!! !! !!!:|||||||||!!::::|||||||||| GluSerSerSerAsnLeuTyrPheThrIleAspTyrPheValAspAspGluLysTyrP 357465 : GAATCGTCTTCGAATCTATACTTCACCATAGACTACTTCGTCGACgacgaaaaatact : 357522 185 : heTyrPheIleLeuLeuHisLeuTyrAlaAlaGlnTyrIleAlaIleGlyThrLeuIl : 203 ||||| !!! !!!||||||:!!||| ! ! ! !:!!!.!! ! !..!:!!:! heTyrValLysPheLeuHisValTyrLeuTyrPheSerLeuGlySerThrValIleLe 357523 : tttacgTCAAGTTCTTACATGTGTATCTATATTTTTCCCTCGGAAGTACAGTCATTCT : 357579 204 : eGlyGlyGlyIleLeuValIleGlyTyrSerThrTyrPheCysGlyLeuPheAsnVal : 222 !|||..!! !:!! !..!||| !!:!:!!!.!!:! ! !||||||!:!.!.||| uGlySerGluValThrThrIleMetPheAlaAsnPheAlaSerGlyLeuTyrGlnVal 357580 : AGGATCAGAAGTAACAACTATTATGTTCGCTAATTTTGCGTCTGGGTTATATCAGGTA : 357636 vulgar: CbirOr447PSE 164 222 . KQ414693.1 357464 357638 + 110 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 357465 357638 110 + . gene_id 1 ; sequence CbirOr447PSE ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 357465 357638 . + . KQ414693.1 exonerate:protein2genome:local exon 357465 357638 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 357465 357638 110 + . alignment_id 1 ; Query CbirOr447PSE ; Align 357465 165 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr449PN Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 68 -> 126 Target range: 357464 -> 357638 69 : GluThrTyrArgAsnIleTyrIleThrThrGluTyrPheValAspGluGluLysTyrP : 88 |||:!!! ! !|||:!!|||.!!|||! !!!:||||||||||||:::|||||||||| GluSerSerSerAsnLeuTyrPheThrIleAspTyrPheValAspAspGluLysTyrP 357465 : GAATCGTCTTCGAATCTATACTTCACCATAGACTACTTCGTCGACgacgaaaaatact : 357522 89 : heTyrPheIleMetLeuHisLeuTyrValAlaHisTyrIleAlaGlyGlyThrLeuIl : 107 ||||| !!! .!.||||||:!!|||:!! ! !! !:!!!.!.!! !..!:!!:! heTyrValLysPheLeuHisValTyrLeuTyrPheSerLeuGlySerThrValIleLe 357523 : tttacgTCAAGTTCTTACATGTGTATCTATATTTTTCCCTCGGAAGTACAGTCATTCT : 357579 108 : eGlyAlaGlyValLeuLeuThrGlyTyrPheThrTyrPheCysGlyLeuPheAsnIle : 126 !|||:!!! !||| ! !! ! !!:! !!.!!:! ! !||||||!:!.!.:!! uGlySerGluValThrThrIleMetPheAlaAsnPheAlaSerGlyLeuTyrGlnVal 357580 : AGGATCAGAAGTAACAACTATTATGTTCGCTAATTTTGCGTCTGGGTTATATCAGGTA : 357636 vulgar: CbirOr449PN 68 126 . KQ414693.1 357464 357638 + 115 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 357465 357638 115 + . gene_id 1 ; sequence CbirOr449PN ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 357465 357638 . + . KQ414693.1 exonerate:protein2genome:local exon 357465 357638 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 357465 357638 115 + . alignment_id 1 ; Query CbirOr449PN ; Align 357465 69 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr436 Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 166 -> 215 Target range: 887621 -> 887768 167 : ThrGluTyrPheValAspArgGluLysTyrPheTyrLeuIleLeuLeuHisMetAspA : 186 ..!|||||| !:!!||| ||||||||||||||||||||| ! !||| !!| ValGluTyrHisIleAspSerGluLysTyrPheTyrLeuIleThrAlaHisCysTyrA 887622 : GTGGAGTACCACATCgacagtgaaaaatatttttacctgATTACAGCTCATTGTTACG : 887679 187 : laAlaValCysIleGlyAlaIleAlaValIleGlyIleAlaThrMetPheValGlyTy : 205 ||:!!..! :!! ! !:!! !..!:!!! ! !! !||||||!:!:!!! ! laSerThrValLeuLeuLeuLeuGlnThrValValHisAspThrMetTyrIleValLe 887680 : CCTCGACAGTACTTCTTCTGCTTCAAACTGTCGTACACGACACAATGTACATTGTTCT : 887736 206 : rMetLysHisAlaCysAlaMetPheLysIle : 215 :!::!!|||!.!||||||:!:||| !:!! uValGlnHisGlyCysAlaLeuPheAlaVal 887737 : GGTCCAACATGGCTGCGCTTTATTCGCAGTT : 887768 vulgar: CbirOr436 166 215 . KQ414735.1 887621 887768 + 101 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 887622 887768 101 + . gene_id 1 ; sequence CbirOr436 ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 887622 887768 . + . KQ414735.1 exonerate:protein2genome:local exon 887622 887768 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 887622 887768 101 + . alignment_id 1 ; Query CbirOr436 ; Align 887622 167 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr428 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 144 -> 216 Target range: 42688 -> 42475 145 : ProTyrIlePheAspValIleMetProLysAsnGluThrTyrAlaArgHisLeuIleIle : 164 |||:!!:!!!:!||||||!!::!: !!|||||||||:!! !!:! !.!!||| ProHisValTyrAspValMetLeuSerLysAsnGluSer---ArgLysLeuGlyPheIle 42688 : CCGCATGTATATGATGTTATGTTATCGAAAAACGAGTCA---CGAAAGTTGGGTTTCATT : 42634 165 : LeuMetCysLysTyrTyrSerIleGluGluLysTyrTyrTyrTyrIleIleLeuHisAla : 184 ! ! ..! ! ||| ! ! !:!!!!:||||||||||||||||||||| !||| ! TyrProAlaTyrTyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAlaHisMet 42633 : TACCCTGCCTATTATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCTCACATG : 42574 185 : SerAlaAlaThrAlaValGlyValPheAlaLeuAlaAlaIleGlyThrIleMetIleSer : 204 !!!:!!!.! ! !|||! ! !!|||.!!!!! !:!! !! !|||||| !!:!:! ThrSerGlyGlyLeuValValPhePheThrPheIleSerCysAspThrIleTyrMetAsn 42573 : ACATCTGGGGGCTTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTACATGAAT : 42514 205 : CysIleLysTyrIleCysGlyMetPheLysIleAla : 216 !:!::!!:!! ||||||:!!!!. !|||:!! IleValGlnHisAlaCysGlyLeuLeuLeuIleSer 42513 : ATCGTGCAACACGCGTGCGGATTGTTGTTGATTTCT : 42476 vulgar: CbirOr428 144 216 . KQ414772.1 42688 42475 - 106 M 13 39 G 1 0 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42476 42688 106 - . gene_id 1 ; sequence CbirOr428 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42476 42688 . - . KQ414772.1 exonerate:protein2genome:local exon 42476 42688 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 42476 42688 106 - . alignment_id 1 ; Query CbirOr428 ; Align 42689 145 39 ; Align 42650 159 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr428 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 144 -> 216 Target range: 33628 -> 33415 145 : ProTyrIlePheAspValIleMetProLysAsnGluThrTyrAlaArgHisLeuIleIle : 164 |||:!!.!!.!!|||||| :!! !!||||||||| :!!||| ! |||! !:!: ProHisPheIleAspValAlaLeuSerLysAsnGlu------SerArgLysLeuSerLeu 33628 : CCGCATTTTATCGATGTTGCGTTGTCGAAAAACGAG------TCACGAAAATTAAGTTTG : 33577 165 : LeuMetCysLysTyrTyrSerIle<->GluGluLysTyrTyrTyrTyrIleIleLeuHis : 183 :!! ! ||||||.!!||| :!!!::|||||||||||||||:::::: !||| MetTyrProAlaTyrTyrGlyIleAspGlnAspLysTyrTyrTyrTyrLeuMetAlaHis 33576 : ATGTACCCTGCCTATTACGGCATTGACCAGGacaagtattattattatctaatgGCTCAC : 33517 184 : AlaSerAlaAlaThrAlaValGlyValPheAlaLeuAlaAlaIleGlyThrIleMetIle : 203 !! !::!||| !|||!.!! ! !!|||!.!!!! !:!! !! !|||||| !!: MetMetSerAlaGlyAlaAlaValPhePheValPheMetSerCysAspThrIleTyrMet 33516 : ATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATGTCCTGCGACACGATTTATATG : 33457 204 : SerCysIleLysTyrIleCysGlyMetPheLysIleAla : 216 !:! !:!!:!!:!! ||||||:!!!!. |||:!! AsnIleValGlnHisAlaCysGlyLeuLeuPheIleSer 33456 : AATATCGTTCAACACGCGTGCGGATTGTTGTTCATTTCC : 33416 vulgar: CbirOr428 144 216 . KQ414772.1 33628 33415 - 100 M 12 36 G 2 0 M 14 42 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33416 33628 100 - . gene_id 2 ; sequence CbirOr428 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33416 33628 . - . KQ414772.1 exonerate:protein2genome:local exon 33416 33628 . - . insertions 3 ; deletions 2 KQ414772.1 exonerate:protein2genome:local similarity 33416 33628 100 - . alignment_id 2 ; Query CbirOr428 ; Align 33629 145 36 ; Align 33593 159 42 ; Align 33548 173 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr438 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 168 -> 216 Target range: 17949 -> 17805 169 : TyrPheValAspGlnAspLysTyrTyrTyrTyrIleLeuLeuHisMetAspValSerTyr : 188 ||||||||||||:!!! :!!|||||||||||||||:!!|||||| !!!! ! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIle 17949 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATT : 17892 189 : IleIleGlyIleIleValIleProAlaThrGlySerLeuLeuPheGlyGlyMetLysTyr : 208 :!:|||! !:!::!:||| ! !||| !! !!!! !! !.!.! ! !:!!:!!:!! LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 17891 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 17832 209 : IleCysGlyLeuPheLysIleAla : 216 ! !|||||||||||| :!:||| ThrCysGlyLeuPheAlaValAla 17831 : ACTTGCGGACTGTTCGCCGTGGCC : 17806 vulgar: CbirOr438 168 216 . KQ414772.1 17949 17805 - 100 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17806 17949 100 - . gene_id 1 ; sequence CbirOr438 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17806 17949 . - . KQ414772.1 exonerate:protein2genome:local exon 17806 17949 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17806 17949 100 - . alignment_id 1 ; Query CbirOr438 ; Align 17950 169 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr429PSE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 141 -> 215 Target range: 33634 -> 33415 142 : TyrLeuProTyrIleLeuAspIleValMetSerLysAsnGluSerTyrAlaIleHisIle : 161 !:!:!!|||:!!.!!:!!|||:!!!.!:!!||||||||||||||| !:!! !:!: PheIleProHisPheIleAspValAlaLeuSerLysAsnGluSerArgLysLeuSerLeu 33634 : TTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAACGAGTCACGAAAATTAAGTTTG : 33577 162 : MetGluMetValThrLysTyrPheIleValSerGluLysTyrTyrPheLeuIleLeuVal : 181 ||| !.!! ! ||| !|||! !..!!::|||||||||::: ::::::!.! Met---TyrProAlaTyrTyrGlyIleAspGlnAspLysTyrTyrTyrTyrLeuMetAla 33576 : ATG---TACCCTGCCTATTACGGCATTGACCAGGacaagtattattattatctaatgGCT : 33520 182 : HisLeuAsnAlaThrCysSerAlaGluLeuIleValPheThrAlaThrAlaThrThrLeu : 201 |||:!!! ::!.!! ! :!!|||! !!!!.!!||||||! !:!! !! !|||! !! ! HisMetMetSerAlaGlyAlaAlaValPhePheValPheMetSerCysAspThrIleTyr 33519 : CACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATGTCCTGCGACACGATTTAT : 33460 202 : MetSerIlePheLysHisIleCysGlyMetPheGluIleAla : 215 |||!:!||| !!:!!||| ||||||:!!!!. |||:!! MetAsnIleValGlnHisAlaCysGlyLeuLeuPheIleSer 33459 : ATGAATATCGTTCAACACGCGTGCGGATTGTTGTTCATTTCC : 33416 vulgar: CbirOr429PSE 141 215 . KQ414772.1 33634 33415 - 120 M 21 63 G 1 0 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33416 33634 120 - . gene_id 1 ; sequence CbirOr429PSE ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33416 33634 . - . KQ414772.1 exonerate:protein2genome:local exon 33416 33634 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 33416 33634 120 - . alignment_id 1 ; Query CbirOr429PSE ; Align 33635 142 63 ; Align 33572 164 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr429PSE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 141 -> 215 Target range: 42694 -> 42475 142 : TyrLeuProTyrIleLeuAspIleValMetSerLysAsnGluSerTyrAlaIleHisIle : 161 |||:!!|||:!!:!!! !|||:!!:!!:!:||||||||||||||| !:!: !.!! TyrIleProHisValTyrAspValMetLeuSerLysAsnGluSerArgLysLeuGlyPhe 42694 : TATATACCGCATGTATATGATGTTATGTTATCGAAAAACGAGTCACGAAAGTTGGGTTTC : 42637 162 : MetGluMetValThrLysTyrPheIleValSerGluLysTyrTyrPheLeuIleLeuVal : 181 !!: !.!! ! ||| !:!!! !..!!!:|||||||||!:!! !|||:!!!.! Ile---TyrProAlaTyrTyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAla 42636 : ATT---TACCCTGCCTATTATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCT : 42580 182 : HisLeuAsnAlaThrCysSerAlaGluLeuIleValPheThrAlaThrAlaThrThrLeu : 201 |||:!!!..:!! ! !!! !!.!! !!!!.!!..!|||! !:!! !! !|||! !! ! HisMetThrSerGlyGlyLeuValValPhePheThrPheIleSerCysAspThrIleTyr 42579 : CACATGACATCTGGGGGCTTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTAC : 42520 202 : MetSerIlePheLysHisIleCysGlyMetPheGluIleAla : 215 |||!:!||| ! :!!||| ||||||:!!!!. !|||:!! MetAsnIleValGlnHisAlaCysGlyLeuLeuLeuIleSer 42519 : ATGAATATCGTGCAACACGCGTGCGGATTGTTGTTGATTTCT : 42476 vulgar: CbirOr429PSE 141 215 . KQ414772.1 42694 42475 - 108 M 21 63 G 1 0 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42476 42694 108 - . gene_id 2 ; sequence CbirOr429PSE ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42476 42694 . - . KQ414772.1 exonerate:protein2genome:local exon 42476 42694 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 42476 42694 108 - . alignment_id 2 ; Query CbirOr429PSE ; Align 42695 142 63 ; Align 42632 164 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr440 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 132 -> 212 Target range: 33655 -> 33415 133 : ValIlePheLeuSerLeuProIleTrpValArgIleIleAspIlePheLeuIleLeuAsn : 152 :!!!!:||| !||| !|||.!! !!.!.!!||||||:!! ||| !||| IleMetPheSerSerAlaProPheIleProHisPheIleAspValAlaLeuSerLysAsn 33655 : ATCATGTTCAGCTCGGCGCCTTTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAAC : 33598 153 : AsnSerGlnHisGlyMetIleGlnLeuThrThrGluTyrPheIleAspGlnGluLysTyr : 172 .!.|||!:! ! !! :!:..!! ! !!.!! ! ||| !|||||||||!::|||||| GluSerArgLysLeuSerLeuMetTyrProAlaTyrTyrGlyIleAspGlnAspLysTyr 33597 : GAGTCACGAAAATTAAGTTTGATGTACCCTGCCTATTACGGCATTGACCAGGacaagtat : 33538 173 : PheTyrLeuIleLeuLeuHisIleAspAlaAlaThrCysIleAlaGlySerGlyLeuThr : 192 :::||| :::::: !|||!!: ::!||| !... !.! !! !! !!!!! ! TyrTyrTyrLeuMetAlaHisMetMetSerAlaGlyAlaAlaValPhePheValPheMet 33537 : tattattatctaatgGCTCACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATG : 33478 193 : AlaIleGlyLeuIleTyrCysAlaTyrPheLysHisIleCysGlyMetPheArgIleAla : 212 :!! !! ! !|||||| ! ! !!:!!||| ||||||:!!!!. !|||:!! SerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuPheIleSer 33477 : TCCTGCGACACGATTTATATGAATATCGTTCAACACGCGTGCGGATTGTTGTTCATTTCC : 33418 vulgar: CbirOr440 132 212 . KQ414772.1 33655 33415 - 102 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33416 33655 102 - . gene_id 1 ; sequence CbirOr440 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33416 33655 . - . KQ414772.1 exonerate:protein2genome:local exon 33416 33655 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 33416 33655 102 - . alignment_id 1 ; Query CbirOr440 ; Align 33656 133 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr445 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 88 -> 214 Target range: 18623 -> 18189 89 : LysHisLeuMetAspArgLeuGlnHisAlaCysAsnGluLeuLysAspGluAsnGluIle : 108 :!!:!!|||:!!|||!!!:!! .!.! !!! |||:!! !::!... ! !!.|||||| GluTyrLeuLeuAspSerMetCysGluAspTrpAsnGlnGluArgSerTyrLysGluIle 18623 : GAATACCTTCTGGATAGTATGTGCGAGGACTGGAATCAAGAACGATCGTACAAGGAGATC : 18566 109 : AlaIleMetLysLysTyrAlaAsnSerAlaGluArgIleAla<->IleValIle{T} > : 126 !.!|||||||||||||||!.!.!.!!!!.!.!.! !:!!:!! .!! !:!!{.} GlyIleMetLysLysTyrGlyGlnArgGlyAsnLeuLeuSerArgPheTyrVal{V}++ 18565 : GGCATCATGAAGAAGTACGGGCAAAGGGGAAATCTGCTCTCGAGGTTCTACGTT{G}gt. : 18506 127 : >>> Target Intron 1 >>>> {hr}SerLeuThrValCysAlaLeuLeuSerVal : 136 59 bp {.!}!:! ! !:!!|||:!!!!!|||! !:!! ++{al}AsnAlaTyrIleCysSerPheLeuPheIle 18505 : ........................ag{TG}AACGCGTACATTTGCTCGTTCTTGTTCATA : 18420 137 : ThrLeuMetProLeuLeuProArgIleLeuSerThrPheLeuLeuValAsnIleSerGly : 156 ! :!!|||! !! ! !!|||:!::!!!:!:!!!:! ! ! !||||||!!! Gln---ValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIleThr--- 18419 : CAA---GTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACG--- : 18363 157 : ProLeuTyrThrLysGlnPheValThrGluTyrPheValAspLysGluLysAsnPheTyr : 176 ||| !! !! ! ! ! ! ||||||||||||:!!! !:!! !!!:!||| ProSerLeuProValValValProGlyTyrTyrPheValAspGluValGluTyrTyrTyr 18362 : CCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTAT : 18306 177 : LeuIleLeuLeuHisThrCysAlaSerPheTyrIleGlyValIleAlaPheSerGlyGly : 196 ! !|||:!!|||||| ! ..!!!!.!!! |||! !|||:!:!.!!:!!!!!.! !! TyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCys 18305 : TACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 18246 197 : GlyLeuValGlyCysAlaPheLeuLysHisIleCysGlyLeuPheSerIleAla : 214 ! ! ! ! ! !.!.!.:!!:!!|||! !||||||||||||:!!:!:||| AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAla 18245 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCC : 18190 vulgar: CbirOr445 88 214 . LHQN01017803.1 18623 18189 - 101 M 34 102 G 0 3 M 3 9 S 0 1 5 0 2 I 0 55 3 0 2 S 1 2 M 11 33 G 1 0 M 17 51 G 1 0 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18190 18623 101 - . gene_id 1 ; sequence CbirOr445 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 18509 18623 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18509 18623 . - . insertions 3 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 18507 18508 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 18450 18508 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 18450 18451 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 18190 18449 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18190 18449 . - . insertions 0 ; deletions 2 LHQN01017803.1 exonerate:protein2genome:local similarity 18190 18623 101 - . alignment_id 1 ; Query CbirOr445 ; Align 18624 89 102 ; Align 18519 123 9 ; Align 18448 127 33 ; Align 18415 139 51 ; Align 18364 157 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr438 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 168 -> 216 Target range: 18333 -> 18189 169 : TyrPheValAspGlnAspLysTyrTyrTyrTyrIleLeuLeuHisMetAspValSerTyr : 188 ||||||||||||:!!! :!!|||||||||||||||:!!|||||| !!!! ! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIle 18333 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATT : 18276 189 : IleIleGlyIleIleValIleProAlaThrGlySerLeuLeuPheGlyGlyMetLysTyr : 208 :!:|||! !:!::!:||| ! !||| !! !!!! !! !.!.! ! !:!!:!!:!! LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 18275 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 18216 209 : IleCysGlyLeuPheLysIleAla : 216 ! !|||||||||||| :!:||| ThrCysGlyLeuPheAlaValAla 18215 : ACTTGCGGACTGTTCGCCGTGGCC : 18190 vulgar: CbirOr438 168 216 . LHQN01017803.1 18333 18189 - 100 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18190 18333 100 - . gene_id 1 ; sequence CbirOr438 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18190 18333 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18190 18333 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18190 18333 100 - . alignment_id 1 ; Query CbirOr438 ; Align 18334 169 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr437PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 278 -> 374 Target range: 458113 -> 458705 279 : ValGlnGluIleGluArgThrIleGlyHisLeuLeuLeuIleIlePheLeuPheThrT : 298 :!!:!!.!.!!::!!..! !:!!!.! !:!!||||||!!:||| !! !||| !| MetGluAsnMetLysGluLeuLeuAlaAlaMetLeuLeuMetIleSerHisPheLeuT 458114 : ATGGAAAACATGAAGGAGCTGCTAGCTGCTATGCTACTCATGATCAGTCACTTCCTTT : 458171 299 : yrMetPheIleAlaAsnTyrAlaGlyGlnGluIleThrAspSerAsnAsnHisIlePh : 317 ||! |||:!:|||||||||||||||||| :!:! !||| !!:!! ! !!:!!|| yrThrPheLeuAlaAsnTyrAlaGlyGlnIleValMetAspHisSerIleAspValPh 458172 : ACACATTTCTGGCGAACTATGCCGGGCAAATCGTGATGGATCACAGTATCGACGTTTT : 458228 318 : eLeuThr{Va} >>>> Target Intron 1 >>>> {l}TyrAsnAlaSerTrp : 325 | !! !{..} 304 bp {!}||| ! !!||| eAspLys{Th}++ ++{r}TyrLeuIleProTrp 458229 : CGATAAA{AC}gt.........................ag{A}TACTTGATTCCATGG : 458556 326 : TyrLeuAlaProLeuGlnIleGlnLysLeuIleLeuPheLeuLeuGlnArgSerAsnL : 345 |||! !|||||||||!:!|||||||||! !:!!||||||:!!! !:!!||||||!!.! TyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleSerGluArgSerLysA 458557 : TACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATATCAGAACGCAGCAAAA : 458616 346 : ysAlaPheThrLeuAsnLeuGlyGlyLeuPheThrLeuSerIleGluCysPheAlaSe : 364 :!!.! !:!!||| !:!! !|||:!!.!!! ! |||...||| ||||||:! rgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPheGluPhePheAlaTh 458617 : GAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatccttcgaatttttcgccaC : 458673 365 : rLeuIleAsnAlaSerValSerTyrPheThr : 374 !:!!! !!!.:!!!!!::: :::|||::: rValThrLysSerTrpLeu***HisPheSer 458674 : GGTAACAAAATCTTGGCtatgacatttttct : 458705 vulgar: CbirOr437PSE 278 374 . KQ414815.1 458113 458705 + 154 M 41 123 S 0 2 5 0 2 I 0 300 3 0 2 S 1 1 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458114 458705 154 + . gene_id 1 ; sequence CbirOr437PSE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 458114 458238 . + . KQ414815.1 exonerate:protein2genome:local exon 458114 458238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 458239 458240 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 458239 458542 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 458541 458542 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458543 458705 . + . KQ414815.1 exonerate:protein2genome:local exon 458543 458705 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458114 458705 154 + . alignment_id 1 ; Query CbirOr437PSE ; Align 458114 279 123 ; Align 458544 321 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr437PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 145 -> 214 Target range: 485722 -> 485926 146 : IleLeuAspMetIleMetProLysAsnGluThrTyrSerArgArgPheIleLeuValM : 165 |||||||||!!::!:!!:||| !||| ! ||| ! !!|||! ! |||! !:!!! IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThr---IleProIleA 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACG---ATTCCTATAA : 485777 166 : etSerAsnTyrPheAlaValGlnGluLysTyrPheTyrLeuPheLeuLeuHisLeuAs : 184 |||.!.:!!|||!.!! !|||:!!||||||||||||! !.!! ! !|||:!! snSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValVa 485778 : ACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGT : 485834 185 : nAlaValPheAlaValGlySerLeuAlaLeuIleAlaValAlaThrMetLeuLeuSer : 203 ! ! !! !! !:!!|||:!!:!!!.!|||:!!::!... ::::::::::!! lLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAla 485835 : TCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCG : 485891 204 : CysLeuLysHisIleCysGlyMetMetLysIle : 214 :!!:!!|||! !||||||:!! ! !||| IleIleGlnHisThrCysGlyLeuTyrThrIle 485892 : ATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr437PSE 145 214 . KQ414815.1 485722 485926 + 107 M 15 45 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485926 107 + . gene_id 2 ; sequence CbirOr437PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485926 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 485723 485926 107 + . alignment_id 2 ; Query CbirOr437PSE ; Align 485723 146 45 ; Align 485768 162 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr437PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 320 -> 366 Target range: 441705 -> 441843 321 : TyrAsnAlaSerTrpTyrLeuAlaProLeuGlnIleGlnLysLeuIleLeuPheLeuL : 340 ||||||:!!!!!||||||! !!.!||||||... |||||||||:!!||||||:!!: TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 341 : euGlnArgSerAsnLysAlaPheThrLeuAsnLeuGlyGlyLeuPheThrLeuSerIl : 359 !!..!!:!|||!..! !!! !! !:!!||||||..!|||:!!|||.!!! !!!! etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 360 : eGluCysPheAlaSerLeuIle : 366 !:!! !!|||:!!|||:!!||| rLysGlyPheSerSerValIle 441821 : CAAAGGTTTTTCCTCGGTAATT : 441843 vulgar: CbirOr437PSE 320 366 . KQ414815.1 441705 441843 + 106 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441843 106 + . gene_id 3 ; sequence CbirOr437PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441706 441843 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441843 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441843 106 + . alignment_id 3 ; Query CbirOr437PSE ; Align 441706 321 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr437PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 320 -> 366 Target range: 445817 -> 445955 321 : TyrAsnAlaSerTrpTyrLeuAlaProLeuGlnIleGlnLysLeuIleLeuPheLeuL : 340 ||||||:!!!!!||||||! !!.!||||||... |||||||||:!!||||||:!!: TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 341 : euGlnArgSerAsnLysAlaPheThrLeuAsnLeuGlyGlyLeuPheThrLeuSerIl : 359 !!..!!:!|||!..! !!! !! !:!!||||||..!|||:!!|||.!!! !!!! etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 360 : eGluCysPheAlaSerLeuIle : 366 !:!! !!|||:!!|||:!!||| rLysGlyPheSerSerValIle 445933 : CAAAGGTTTTTCCTCGGTAATT : 445955 vulgar: CbirOr437PSE 320 366 . KQ414815.1 445817 445955 + 106 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 445955 106 + . gene_id 4 ; sequence CbirOr437PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445818 445955 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445955 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 445955 106 + . alignment_id 4 ; Query CbirOr437PSE ; Align 445818 321 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr430PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 331 -> 388 Target range: 458534 -> 458705 332 : ValThrThrTyrThrValSerUnkTyrLeuAlaProIleArgIleGlnLysLeuValL : 351 :!! !! !||| !:!! !! |||! !||||||:!!||||||||||||! !:!!| IleArgArgTyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuL 458535 : ATTCGTAGATACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCT : 458592 352 : euPheLeuLeuLeuArgSerSerArgIleLeuThrLeuAsnValGlyGlyLeuTyrVa : 370 |||||:!!! ! !||||||!.!|||:!: !:!!||| !:!! !|||:!! !:! euPheIleSerGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIl 458593 : TGTTCATATCAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCAT : 458649 371 : lAlaSerLeuGluGlyPheAlaThrLeuValSerAlaSerValSerTyrPheThr : 388 !||||||...||| |||||||||:!!..!!.!:!!!!!::: :::|||::: eAlaSerPheGluPhePheAlaThrValThrLysSerTrpLeu***HisPheSer 458650 : TGCatccttcgaatttttcgccaCGGTAACAAAATCTTGGCtatgacatttttct : 458705 vulgar: CbirOr430PSE 331 388 . KQ414815.1 458534 458705 + 106 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458535 458705 106 + . gene_id 1 ; sequence CbirOr430PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 458535 458705 . + . KQ414815.1 exonerate:protein2genome:local exon 458535 458705 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458535 458705 106 + . alignment_id 1 ; Query CbirOr430PSE ; Align 458535 332 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr430PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 141 -> 223 Target range: 448079 -> 448322 142 : PheSerProTyrIleLeuAspIleValMetProLysAsnGluSerTyrAlaIleHisI : 161 ||| ! !:::...|||||||||:::||||||! !|||! !||| .!! ||| PheValValHisPheLeuAspIleLeuMetProMetAsnValSer---ThrArgHisG 448080 : TTCGTGGTAcattttctcgatattttaATGCCAATGAACGTATCT---ACACGGCACG : 448134 162 : leMetLysLeuIleThrLysTyrPheArgValSerGluLysTyrTyrPheLeuSerPh : 180 :!: !!!:!!! !:!!! !||| !!! !..!!!:|||!:!!:! !! !! !!! luLeuProPheLeuIleGlnCysPheCysAspGlnAspLysPhePheHisTyrIleLe 448135 : AGCTACCCTTCCTAATTCAATGTTTCTGTGATCAAGATAAATTCTTCCACTATATATT : 448191 181 : eIleTyrLeuAsnAlaAlaCysSerAlaGlyValIleValValIleGlyThrGlyThr : 199 .:!!!:!|||! !!.! ! !! ! !|||! !! !||||||:!!!.!||| !||| uValPheLeuIleValLeuThrIleLeuGlyGlySerValValLeuAlaThrThrThr 448192 : AGTTTTCTTGATCGTTCTCACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAACG : 448248 200 : MetIleLeuSerTyrPheLysHisAlaCysGlyLeuPheGluIleAlaSerTyrArgM : 219 ! !|||! !!:! !:!!|||..!||||||||||||:!!||||||.!!!! ..!! ThrTyrLeuIlePheSerGlnHisCysCysGlyLeuPheLysIleAlaGly***GluI 448249 : ACTTACTTGATATTCAGTCAACATTGTTGTGGATTGTTCAAAATTGCAGGGTAAGAAA : 448308 220 : etGluGlnAlaMet : 223 !: ! |||||| leMetThrAlaMet 448309 : TTATGACTGCTATG : 448322 vulgar: CbirOr430PSE 141 223 . KQ414815.1 448079 448322 + 100 M 15 45 G 1 0 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448080 448322 100 + . gene_id 2 ; sequence CbirOr430PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448080 448322 . + . KQ414815.1 exonerate:protein2genome:local exon 448080 448322 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 448080 448322 100 + . alignment_id 2 ; Query CbirOr430PSE ; Align 448080 142 45 ; Align 448125 158 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr447PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 336 -> 401 Target range: 458525 -> 458798 337 : TyrIlePheLeuThrAlaTyrAsnValArgTrpTyrIleAlaProValArgValGlnA : 356 !:! !! !:!! ! !||| :!!! !|||||| !||||||:!!|||:!!|||! PheAlaCysIleArgArgTyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnL 458526 : TTTGCATGCATTCGTAGATACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAA : 458583 357 : rgLeuIleLeuPheLeuLeuGlnLysGlyThrLysSerTyrSerMetLysPheGlyGl : 375 :!! !:!!||||||:!!! !:!!:::.!!! !!:! ! !|||:!! .!. !|| ysTyrLeuLeuPheIleSerGluArgSerLysArgValSerSerLeuCysMetTyrGl 458584 : AGTATCTCTTGTTCATATCAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGG : 458640 376 : yValTyrThrMetSerLeuGluSerPheAlaSer >>>> Target Intron 1 > : 387 |:!! !! ! |||...||| ||||||:!! 78 bp yMetIleIleAlaSerPheGluPhePheAlaThr++ 458641 : CATGATCATTGCatccttcgaatttttcgccaCGgt...................... : 458678 388 : >>> LeuSerThrThrSerIleSerTyrPheThrValIleTyrSerIle : 401 !!!! !! !.!!:!!!!:||||||! !||||||:!!||||||||| ++PheMetLysAlaAlaMetSerTyrCysThrValLeuTyrSerIle 458679 : ...agTTCATGAAAGCAGCGATGTCCTATTGCACGGTATTATATTCCATC : 458798 vulgar: CbirOr447PSE 336 401 . KQ414815.1 458525 458798 + 103 M 50 150 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458526 458798 103 + . gene_id 1 ; sequence CbirOr447PSE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 458526 458675 . + . KQ414815.1 exonerate:protein2genome:local exon 458526 458675 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 458676 458677 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 458676 458753 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 458752 458753 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458754 458798 . + . KQ414815.1 exonerate:protein2genome:local exon 458754 458798 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458526 458798 103 + . alignment_id 1 ; Query CbirOr447PSE ; Align 458526 337 150 ; Align 458754 387 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr447PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 7 -> 58 Target range: 477919 -> 478072 8 : ArgValThrCysMetAspThrGlnPhePheTyrIleHisArgIleSerLeuValAlaI : 27 ||||||! ! ! ! !|||!:!!:! !!.!!|||!:!! ! !|||..!|||| ArgValLysValGluLeuMetGlnTyrTyrAsnPheHisLysAsnLeuLeuThrAlaI 477920 : AGAGTGAAGGTTGAACTAATGCAGTATTACAACTTCCACAAGAACCTATTAACGGCAA : 477977 28 : leGlyLeuTrpProTyrHisArgThrMetLeuValGlnLeuGlnSerCysValPheSe : 46 ||||||||||||||||||||!.!|||! !!! ! !||||||!:! !!:!! !!|| leGlyLeuTrpProTyrHisAsnThrLysPheArgThrLeuGlnAsnSerIleValSe 477978 : TAGGACTTTGGCCGTACCATAACACGAAATTCAGAACATTACAAAACAGTATTGTCAG : 478034 47 : rPheIleMetIleSerCysIleIlePheGlnLeuThr : 58 ||||||| .!!|||! !:!! ! ! |||:!!:!! rPheIleArgPheSerPheValAlaValGlnValSer 478035 : CTTCATTCGCTTTTCGTTTGTAGCTGTACAGGTATCT : 478072 vulgar: CbirOr447PSE 7 58 . KQ414815.1 477919 478072 + 103 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 477920 478072 103 + . gene_id 2 ; sequence CbirOr447PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 477920 478072 . + . KQ414815.1 exonerate:protein2genome:local exon 477920 478072 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 477920 478072 103 + . alignment_id 2 ; Query CbirOr447PSE ; Align 477920 8 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr447PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 173 -> 225 Target range: 478638 -> 478794 174 : ThrGluTyrPheValGluGluGluLysTyrPheTyrPheIleLeuLeuHisLeuTyrA : 193 ||||||||||||:!!!::|||:::||||||||| ||||||::: |||:!!||| ThrGluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValTyrL 478639 : ACGGAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGTACC : 478696 194 : laAlaGlnTyrIleAlaIleGlyThrLeuIleGlyGlyGlyIleLeuValIleGlyTy : 212 !:!! ! !!: ! ! !..!! !:!!!.! !! ! ! !|||||| !!: euSerLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMetTr 478697 : TGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTATGTG : 478753 213 : rSerThrTyrPheCysGlyLeuPheAsnValAlaArgTyr : 225 :! !..!:!! ! !||||||!:!|||:!! !|||||| pMetValHisThrIleGlyLeuTyrAsnIleIleArgTyr 478754 : GATGGTGCATACTATCGGCTTGTATAATATCATAAGGTAT : 478794 vulgar: CbirOr447PSE 173 225 . KQ414815.1 478638 478794 + 100 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478639 478794 100 + . gene_id 3 ; sequence CbirOr447PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478639 478794 . + . KQ414815.1 exonerate:protein2genome:local exon 478639 478794 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478639 478794 100 + . alignment_id 3 ; Query CbirOr447PSE ; Align 478639 174 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr436 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 89 -> 215 Target range: 475310 -> 475770 90 : ValLysGlnMetMetGluGlnLeuGlnHisIleCysThrAsnLeuThrAspGluAsnG : 109 |||||||||:!:||||||:!!:!!:!!:!! !!! ! !!..:!!!.!||||||...| ValLysGlnLeuMetGluLysIleLysTyrAspTrpMetThrIleAsnAspGluGlyG 475311 : GTGAAGCAGTTAATGGAGAAGATAAAGTACGATTGGATGACGATCAACGACGAGGGAG : 475368 110 : luIleAlaIleMetLysAsnTyrGlyAsnLysThrArgThrTyrThrAlaSerLeuIl : 128 ||:!! |||:::|||||| ..! !!!:! !!:! !!:!||| !! !!!! luLeuArgIleLeuLysAsnAsnAlaTyrArgGlyLysGlyPheThrIleIlePheAl 475369 : AGCTTagaatcttgaaaaataacgCTTACAGAGGAAAAGGATTCACGATCATTTTCGC : 475425 129 : e{L} >>>> Target Intron 1 >>>> {eu}TyrAlaPheCysAsnLeuIle : 136 !{|} 85 bp {||} !.!!:! !..:!!.!! a{L}++ ++{eu}LeuValTyrProThrIlePhe 475426 : A{T}gt.........................ag{TA}CTGGTATACCCAACAATATTC : 475534 137 : IlePheIleLeuLeuProPheLeuProLysIleAlaGlyIleIleLeuPheIleAsnG : 156 ! !.!.|||||||||! !|||! ! !!|||||| !! ! !:!:||| !:!:|||| ThrMetIleLeuLeuLeuPheSerSerLysIleLeuAspSerLeuLeuProLeuAsnG 475535 : ACCATGATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTACCCCTGAACG : 475594 157 : luSerGlnLeuHisHisThrValTyrIleMetThrGluTyrPheValAspArgGluLy : 175 |||||!::! ! ! :!!:!! ||| |||||||||::::::..!:!!|| luSerArgProSerTrpSerLeu---IleArgIleGluTyrPheIleAsnGluGlnLy 475595 : AGTCTCGTCCTAGCTGGTCTCTG---AtacgaatagaatatttcataaacGAACAGAA : 475648 176 : sTyrPheTyrLeuIleLeuLeuHisMetAspAlaAlaValCysIleGlyAlaIleAla : 194 |||||||||||||! !:!!:!!:!!..! !!.!.!!:!! !:!: !!.!! !.!! sTyrPheTyrLeuSerValIleTyrGlnThrValThrIleLeuLeuPheGlyThrThr 475649 : ATACTTTTATCTGAGCGTGATCTATCAGACTGTAACGATCCTTCTGTTTGGTACCACG : 475705 195 : ValIleGlyIleAlaThrMetPheValGlyTyrMetLysHisAlaCysAlaMetPheL : 214 !:!!!.!! !! !.!!!!:|||..! !!:::!!:!!|||..! ::::::|||: TyrValAlaThrGluAlaIlePheThrMetTrpLeuGlnHisCysIleSerLeuPheG 475706 : TACGTAGCAACTGAAGCAATATTTACCATGTGGTTGCAACATTGCATaagtttatttg : 475765 215 : ysIle : 215 ::||| luIle 475766 : aaatt : 475770 vulgar: CbirOr436 89 215 . KQ414815.1 475310 475770 + 151 M 39 117 S 0 1 5 0 2 I 0 81 3 0 2 S 1 2 M 34 102 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475311 475770 151 + . gene_id 1 ; sequence CbirOr436 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 475311 475428 . + . KQ414815.1 exonerate:protein2genome:local exon 475311 475428 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 475429 475430 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 475429 475513 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 475512 475513 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 475514 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475514 475770 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 475311 475770 151 + . alignment_id 1 ; Query CbirOr436 ; Align 475311 90 117 ; Align 475516 130 102 ; Align 475618 165 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr448PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 322 -> 389 Target range: 458525 -> 458804 323 : PheIlePheLeuSerAlaTyrAsnValArgTrpTyrIleAlaProLeuArgValGlnA : 342 ||| !! !:!! !! !||| :!!! !|||||| !||||||||||||:!!|||! PheAlaCysIleArgArgTyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnL 458526 : TTTGCATGCATTCGTAGATACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAA : 458583 343 : rgLeuIleValPheLeuLeuGlnLysGlyThrLysProTyrSerMetLysValGlyGl : 361 :!! !:!!:!!|||:!!! !:!!:::.!!! !!:! ! !|||:!! :!! !|| ysTyrLeuLeuPheIleSerGluArgSerLysArgValSerSerLeuCysMetTyrGl 458584 : AGTATCTCTTGTTCATATCAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGG : 458640 362 : yLeuTyrThrIleSerLeuGluAsnPheAlaSer >>>> Target Intron 1 > : 373 |:!! !! ! |||...||| ||||||:!! 78 bp yMetIleIleAlaSerPheGluPhePheAlaThr++ 458641 : CATGATCATTGCatccttcgaatttttcgccaCGgt...................... : 458678 374 : >>> LeuSerThrAlaAlaIleSerTyrPheThrValLeuTyrSerLeuGlnAsn : 389 !!!! !! !||||||!!:||||||! !|||||||||||||||:!!.!.||| ++PheMetLysAlaAlaMetSerTyrCysThrValLeuTyrSerIleAsnAsn 458679 : ...agTTCATGAAAGCAGCGATGTCCTATTGCACGGTATTATATTCCATCAATAAC : 458804 vulgar: CbirOr448PSE 322 389 . KQ414815.1 458525 458804 + 120 M 50 150 5 0 2 I 0 74 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458526 458804 120 + . gene_id 1 ; sequence CbirOr448PSE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 458526 458675 . + . KQ414815.1 exonerate:protein2genome:local exon 458526 458675 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 458676 458677 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 458676 458753 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 458752 458753 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458754 458804 . + . KQ414815.1 exonerate:protein2genome:local exon 458754 458804 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458526 458804 120 + . alignment_id 1 ; Query CbirOr448PSE ; Align 458526 323 150 ; Align 458754 373 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr433 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 122 -> 216 Target range: 464561 -> 464843 123 : TyrThrAlaSerIleIleLeuTyrThrValCysAsnLeuLeuIlePheIleLeuLeuP : 142 ||| ! !!:!||| !:!!! ! !:!! ! !:!!|||.!!.!! !|||||| TyrPheLeuAsnIleProValCysPheIleProValIleLeuPheIleCysLeuLeuG 464562 : TACTTCCTGAATATTCCAGTGTGCTTCATTCCCGTTATACTGTTCATCTGTTTACTCG : 464619 143 : roValLeuProThrAlaAlaGlyIleIleLeuPheIleAsnGluSerGlnLeuHisHi : 161 !||||||||| ! ! !! !:!::!! ! !:!!|||||||||!::! !|||!! luValLeuProAspIleLeuAspValValAlaProLeuAsnGluSerArgSerHisGl 464620 : AAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATGAATCTCGTTCTCATCA : 464676 162 : sThrValTyrIleMetThrGluTyrPheValAspArgGluLysTyrPheTyrLeuIle : 180 . !:!! !! ! ! ! !:!.!!..!|||!!!..! ! !!!:! !:!!! ! nTyrLeuIleThrAlaGluPhePheIleThrAspSerSerProAsnTyrIleValThr 464677 : ATACTTAATTACCGCGGAATTTTTCATCACTGATAGTTCGCCGAATTATATCGTAACT : 464733 181 : LeuLeuHisMetAspValAlaValCysIleGlyAlaIleAlaValIleSerThrAlaT : 200 ! !:!! !! !|||:!!.!!:!! !!!:|||!.!! .!!:!!|||:!!:!!! !| CysValGlyThrAspIleThrLeuIleMetGlyValThrThrIleIleAlaSerGluT 464734 : TGTGTTGGTACGGATATTACTCTTATCATGGGAGTCACGACAATAATTGCCTCCGAAA : 464793 201 : hrMetLeuIleGlyTyrCysLysTyrIleCysAlaMetPheLysIleSer : 216 ||.!. !.!! !! :!!:!!|||||||||||||||||||||!!! hrPheThrPheLeuLeuLeuGlnHisIleCysAlaMetPheLysIleThr 464794 : CGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAATGTTCAAAATCACA : 464843 vulgar: CbirOr433 122 216 . KQ414815.1 464561 464843 + 106 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464562 464843 106 + . gene_id 1 ; sequence CbirOr433 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464562 464843 . + . KQ414815.1 exonerate:protein2genome:local exon 464562 464843 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464562 464843 106 + . alignment_id 1 ; Query CbirOr433 ; Align 464562 123 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr433 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 5 -> 50 Target range: 477934 -> 478069 6 : ValLeuGlnTyrPheAsnLeuAsnArgIleLeuLeuLeuThrValGlyLeuTrpProT : 25 :!!:!!||||||!:!|||!!!:!!!:!! !|||||| !.!!:!!||||||||||||| LeuMetGlnTyrTyrAsnPheHisLysAsnLeuLeuThrAlaIleGlyLeuTrpProT 477935 : CTAATGCAGTATTACAACTTCCACAAGAACCTATTAACGGCAATAGGACTTTGGCCGT : 477992 26 : yrGlnArgThrLysLeuValGluPheGlnPheCysLeuPhePheGlyIleLeuValSe : 44 ||!!.!.!||||||!!! ! !!!.||| ! !!:!! !! ! !|||! ! !!|| yrHisAsnThrLysPheArgThrLeuGlnAsnSerIleValSerPheIleArgPheSe 477993 : ACCATAACACGAAATTCAGAACATTACAAAACAGTATTGTCAGCTTCATTCGCTTTTC : 478049 45 : rPheIleAlaValGlnLeu : 50 ||||:!!|||||||||:!! rPheValAlaValGlnVal 478050 : GTTTGTAGCTGTACAGGTA : 478069 vulgar: CbirOr433 5 50 . KQ414815.1 477934 478069 + 100 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 477935 478069 100 + . gene_id 2 ; sequence CbirOr433 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 477935 478069 . + . KQ414815.1 exonerate:protein2genome:local exon 477935 478069 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 477935 478069 100 + . alignment_id 2 ; Query CbirOr433 ; Align 477935 6 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr445 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 326 -> 394 Target range: 476685 -> 476964 327 : TyrAsnAspMetPheSerTyrAlaTyrAsnValArgTrpTyrThrAlaProIleHisI : 346 |||...... ! ! !||| !|||||| !..!|||||||||||||||:!! | TyrThrSerArg***IleTyrArgTyrAsnSerGluTrpTyrThrAlaProLeuSerI 476686 : tatacgtcACGATGAATTTATAGATACAACTCTGAATGGTACACAGCGCCGTTATCca : 476743 347 : leGlnLysLeuIleLeuPheLeuLeuGlnArgSerCysLysProTyrGlyLeuLysLe : 365 |||||||||||:::......:::::! !|||!!! |||||| ! !! !||| leGlnLysLeuLeuPheLeuIleIleLeuArgThrThrLysProProIleSerLysAl 476744 : ttcaaaaattattatttcttataatATTACGAACAACGAAACCACCCATTTCGAAGGC : 476800 366 : uGlyGlyIlePheIleAlaSerLeuLysGlyPheAlaSer >>>> Target Intr : 379 !! ! !:!!!:!! !||||||:!!:!!.!!|||.!! ! 75 bp aValPheValTyrThrAlaSerMetGluSerPheThrVal++ 476801 : AGTGTTCGTATATACTGCATCGATGGAAAGTTTCACGGTGgt................ : 476844 380 : on 1 >>>> LeuSerThrThrSerValSerTyrPheThrValIleTyrSerThrGl : 394 ||| !! !:!!|||||||||||||||! !||||||||||||! !|| ++LeuValLysSerSerValSerTyrPheMetValIleTyrSerIleGl 476845 : .........agCTGGTAAAATCATCAGTGTCTTATTTCATGGTGATATACTCTATCCa : 476962 395 : n : 394 | n 476963 : g : 476964 vulgar: CbirOr445 326 394 . KQ414815.1 476685 476964 + 137 M 52 156 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 476686 476964 137 + . gene_id 1 ; sequence CbirOr445 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 476686 476841 . + . KQ414815.1 exonerate:protein2genome:local exon 476686 476841 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 476842 476843 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 476842 476916 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 476915 476916 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 476917 476964 . + . KQ414815.1 exonerate:protein2genome:local exon 476917 476964 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 476686 476964 137 + . alignment_id 1 ; Query CbirOr445 ; Align 476686 327 156 ; Align 476917 379 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr445 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 332 -> 379 Target range: 441699 -> 441840 333 : TyrAlaTyrAsnValArgTrpTyrThrAlaProIleHisIleGlnLysLeuIleLeuP : 352 ||| !|||||| !! !|||||| !!.!|||:!! ! |||||||||:!!|||| TyrArgTyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuP 441700 : TATAGATACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGT : 441757 353 : heLeuLeuGlnArgSerCysLysProTyrGlyLeuLysLeuGlyGlyIlePheIleAl : 371 ||:!!:!!..!!:!||| ! |||! ! !:!!!!.|||..!||||||||| ! ! heIleMetMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaPr 441758 : TCATCATGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCC : 441814 372 : aSerLeuLysGlyPheAlaSerLeu : 379 !!!!! !|||||||||:!!|||:!! oCysTyrLysGlyPheSerSerVal 441815 : GTGTTACAAAGGTTTTTCCTCGGTA : 441840 vulgar: CbirOr445 332 379 . KQ414815.1 441699 441840 + 116 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441700 441840 116 + . gene_id 2 ; sequence CbirOr445 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441700 441840 . + . KQ414815.1 exonerate:protein2genome:local exon 441700 441840 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441700 441840 116 + . alignment_id 2 ; Query CbirOr445 ; Align 441700 333 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr445 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 334 -> 379 Target range: 445817 -> 445952 335 : TyrAsnValArgTrpTyrThrAlaProIleHisIleGlnLysLeuIleLeuPheLeuL : 354 |||||| !! !|||||| !!.!|||:!! ! |||||||||:!!||||||:!!: TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 355 : euGlnArgSerCysLysProTyrGlyLeuLysLeuGlyGlyIlePheIleAlaSerLe : 373 !!..!!:!||| ! |||! ! !:!!!!.|||..!||||||||| ! !!!!!! etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 374 : uLysGlyPheAlaSerLeu : 379 !|||||||||:!!|||:!! rLysGlyPheSerSerVal 445933 : CAAAGGTTTTTCCTCGGTA : 445952 vulgar: CbirOr445 334 379 . KQ414815.1 445817 445952 + 110 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 445952 110 + . gene_id 3 ; sequence CbirOr445 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445818 445952 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445952 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 445952 110 + . alignment_id 3 ; Query CbirOr445 ; Align 445818 335 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr445 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 335 -> 384 Target range: 490203 -> 490350 336 : AsnValArgTrpTyrThrAlaProIleHisIleGlnLysLeuIleLeuPheLeuLeuG : 355 !:!|||!.!|||||||||||||||||| !||||||||||||:!:|||.!!:!!:!!| SerValAsnTrpTyrThrAlaProIleAlaIleGlnLysLeuLeuLeuIleIleMetG 490204 : AGCGTGAATTGGTACACGGCTCCAATTGCCATACAAAAATTGCTGTTGATCATTATGC : 490261 356 : lnArgSerCysLysProTyrGlyLeuLysLeuGlyGlyIlePheIleAlaSerLeuLy : 374 ||!.!!!! ::! !! !..!:!!! !||| !|||!!:!:!|||:!!|||!!! ! lnAsnThrIleArgAsnSerSerIleThrLeuPheGlyMetTyrIleSerSerPheAs 490262 : AAAATACTATACGAAATTCTTCAATAACACTCTTCGGAATGTATATATCGTCTTTCGA : 490318 375 : sGlyPheAlaSerLeuSerThrThrSerVal : 384 |||||| !! !:!!!:!!.!||| ::: pGlyPhePheMetValAsnAsnThrIleIle 490319 : TGGTTTCTTCATGGTAAATAACAcgattatt : 490350 vulgar: CbirOr445 335 384 . KQ414815.1 490203 490350 + 109 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 490204 490350 109 + . gene_id 4 ; sequence CbirOr445 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 490204 490350 . + . KQ414815.1 exonerate:protein2genome:local exon 490204 490350 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 490204 490350 109 + . alignment_id 4 ; Query CbirOr445 ; Align 490204 336 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr440 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 328 -> 387 Target range: 476709 -> 476961 329 : TyrAsnThrGluTrpTyrIleAlaProLeuGlnThrGlnLysLeuIleLeuPheLeuL : 348 ||||||:!!|||||||||! !|||||||||... |||||||||:::......:::: TyrAsnSerGluTrpTyrThrAlaProLeuSerIleGlnLysLeuLeuPheLeuIleI 476710 : TACAACTCTGAATGGTACACAGCGCCGTTATCcattcaaaaattattatttcttataa : 476767 349 : euGlnArgAsnAsnLysProPheIleLeuAsnIleArgGlyIleValIleSerSerMe : 367 :! !|||!..!..|||||| !|||! !!!. ! ! !:!! !! !:!!||||| leLeuArgThrThrLysProProIleSerLysAlaValPheValTyrThrAlaSerMe 476768 : tATTACGAACAACGAAACCACCCATTTCGAAGGCAGTGTTCGTATATACTGCATCGAT : 476824 368 : tGluCysPheThrLys >>>> Target Intron 1 >>>> LeuMetLysAlaS : 377 |||| !!|||||| ! 75 bp |||:!:|||:!!| tGluSerPheThrVal++ ++LeuValLysSerS 476825 : GGAAAGTTTCACGGTGgt.........................agCTGGTAAAATCAT : 476929 378 : erIleSerTyrPheThrValIleTyrSerIle : 387 ||:!:|||||||||! !||||||||||||||| erValSerTyrPheMetValIleTyrSerIle 476930 : CAGTGTCTTATTTCATGGTGATATACTCTATC : 476961 vulgar: CbirOr440 328 387 . KQ414815.1 476709 476961 + 145 M 44 132 5 0 2 I 0 71 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 476710 476961 145 + . gene_id 1 ; sequence CbirOr440 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 476710 476841 . + . KQ414815.1 exonerate:protein2genome:local exon 476710 476841 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 476842 476843 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 476842 476916 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 476915 476916 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 476917 476961 . + . KQ414815.1 exonerate:protein2genome:local exon 476917 476961 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 476710 476961 145 + . alignment_id 1 ; Query CbirOr440 ; Align 476710 329 132 ; Align 476917 373 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr440 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 115 -> 211 Target range: 457123 -> 457411 116 : AsnAlaLysArgLeuThrAlaAsnIleSerLeuLeuThrMetGlySerIleValIleP : 135 ||| |||::: ::!! |||!!!:!!! !||| !!.!! !:!!:!!. AsnAspLysLysLysProSerMetIleThrValSerThrTyrCysGlyAlaLeuValI 457124 : aatgataaaaaaaaaccttcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTA : 457181 136 : heLeuSerLeuProIleTrpValArgIleIleAspIlePheLeuIleLeuAsnAsnSe : 154 !! !!!!|||! !:!!!:: !! !:!!:!!|||||| ! :!! !||||||.!.|| leThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSe 457182 : TTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATC : 457238 155 : rGlnHisGlyMetIleGlnLeuThrThrGluTyrPheIleAspGlnGluLysTyrPhe : 173 |!::! ! !! !:!! ! ||||||.!!|||||||||:!!|||..!:!!||||||.!. rArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMet 457239 : ACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATG : 457295 174 : TyrLeuIleLeuLeuHisIleAspAlaAlaThrCysIleAlaGlySerGlyLeuThrA : 193 :!!! !|||:!! !|||||| !.!!..! ! ||||||!.!!!! !||||||| HisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrA 457296 : CATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAG : 457355 194 : laIleGlyLeuIleTyrCysAlaTyrPheLysHisIleCysGlyMetPheArgIle : 211 ||! !! !! !:!! ! .!! !! ! !|||:!!||||||:!!|||!:!:!! laAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457356 : CTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr440 115 211 . KQ414815.1 457123 457411 + 144 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457124 457411 144 + . gene_id 2 ; sequence CbirOr440 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457124 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457124 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457124 457411 144 + . alignment_id 2 ; Query CbirOr440 ; Align 457124 116 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr440 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 119 -> 211 Target range: 485647 -> 485926 120 : LeuThrAlaAsnIleSerLeuLeuThrMetGlySerIleValIlePheLeuSerLeuP : 139 |||||| !!:!|||! ! !:!!! !!!:||| !! :!!:!! ! |||! !||| LeuThrAsnSerIleIleAlaValIleIleGlyProSerLeuLeuValLeuIleLeuG 485648 : TTAACGAACAGTATTATTGCAGTAATTATCGGTCCATCGTTACTTGTGCTGATTCTTG : 485705 140 : roIleTrpValArg<->IleIleAspIlePheLeuIleLeuAsnAsnSerGlnHisGl : 157 !|||!:: !!.! |||:!:||||||!!.:!! !|||||| !!!!!!::! ! lyIlePheAsnAsnSerIleLeuAspIleLeuIleProLeuAsnTyrThrArgProAr 485706 : GTATATTTAACAACAGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCG : 485762 158 : yMetIleGlnLeuThrThrGluTyrPheIleAspGlnGluLysTyrPheTyrLeuIle : 176 !! !|||! :!!!.!:!!|||:!!|||:!!||||||:!!||||||||||||! !||| gThrIleProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIle 485763 : GACGATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATT : 485819 177 : LeuLeuHisIleAspAlaAlaThrCysIleAlaGlySerGlyLeuThrAlaIleGlyL : 196 ! !|||:!!! ! ! !..! !|||!.!!.!! !! !||| !::! : AlaAlaHisValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluI 485820 : GCAGCACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaa : 485879 197 : euIleTyrCysAlaTyrPheLysHisIleCysGlyMetPheArgIle : 211 ::::: ||| .!.:!!|||! !||||||:!!!:!! !||| leLeuIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIle 485880 : tattaattatggCGATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr440 119 211 . KQ414815.1 485647 485926 + 122 M 24 72 G 0 3 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485648 485926 122 + . gene_id 3 ; sequence CbirOr440 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485648 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485648 485926 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485648 485926 122 + . alignment_id 3 ; Query CbirOr440 ; Align 485648 120 72 ; Align 485723 144 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr440 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 123 -> 211 Target range: 475506 -> 475770 124 : IleSerLeuLeuThrMetGlySerIleValIlePheLeuSerLeuProIleTrpValA : 143 ::!!!!:!!|||..! !!!!||| !!! !.!.:!!! !|||! !.!!! ! !! ValThrValLeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerSerL 475507 : gtTACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGTCTA : 475564 144 : rgIleIleAspIlePheLeuIleLeuAsnAsnSerGlnHisGlyMetIleGlnLeuTh : 162 :!|||:!!||| !!!.||| !||||||.!.|||!::! !.!! ! !! !::: ysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleAr 475565 : AGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacg : 475621 163 : rThrGluTyrPheIleAspGlnGluLysTyrPheTyrLeuIleLeuLeuHisIleAsp : 181 ||||||||||||::::!!:!!|||||||||||||||! !:!!:!!:!! ! gIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThr 475622 : aatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACT : 475678 182 : AlaAlaThrCysIleAlaGlySerGlyLeuThrAlaIleGlyLeuIleTyrCysAlaT : 201 !.!.!!! ! !:!: !|||!!! !! !..!|||! !! ! !|||!:! ! !! ValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetT 475679 : GTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGT : 475738 202 : yrPheLysHisIleCysGlyMetPheArgIle : 211 ::!!.:!!||| ! ...:::|||...||| rpLeuGlnHisCysIleSerLeuPheGluIle 475739 : GGTTGCAACATTGCATaagtttatttgaaatt : 475770 vulgar: CbirOr440 123 211 . KQ414815.1 475506 475770 + 109 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475507 475770 109 + . gene_id 4 ; sequence CbirOr440 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475507 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475507 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475507 475770 109 + . alignment_id 4 ; Query CbirOr440 ; Align 475507 124 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr428 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 139 -> 257 Target range: 457186 -> 457831 140 : ValMetGluIleTrpProTyrIlePheAspValIleMetProLysAsnGluThrTyrA : 159 ..!:!!:!!:!!!::||| :!!.!!|||:!!:!::!:||| !||||||:!! ! ThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgP 457187 : ACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCC : 457244 160 : laArgHisLeuIleIleLeuMetCysLysTyrTyrSerIleGluGluLysTyrTyrTy : 178 !! !!.!.||| !|||! ...:!!|||!:! ! ! !:!!|||||| :! roCysGluLeu---TyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHi 457245 : CCTGTGAGTTA---TACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCA : 457298 179 : rTyrIleIleLeuHisAlaSerAlaAlaThrAlaValGlyValPheAlaLeuAlaAla : 197 !||||||||| !||| !! !.!!..! ! !:!!!.!!.! !.!!|||.!!||| sTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAla 457299 : TTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCT : 457355 198 : IleGlyThrIleMetIleSerCysIleLysTyrIleCysGlyMetPheLysIleAla{ : 217 ! !! !:!!:!!:!:|||!!! !:!! !:!!:!!||||||:!!||||||:!!.!!{ AsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeuThr{ 457356 : AACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTTACT{ : 457415 218 : Se} >>>> Target Intron 1 >>>> {r}TyrArgLeuGluArgAlaMetTh : 225 ||} 303 bp {|}||||||||||||!.!:!!:!! Se}++ ++{r}TyrArgLeuGluHisSerLeuAs 457416 : AG}gt.........................ag{C}TATAGATTAGAACACTCTTTGGA : 457742 226 : rIleThrAsnThrLeuGlnAsnIleSerLeuLysAsnGluPheValIleCysLysGlu : 244 ! !..!!.!:!!! !:!! !||| !|||!.. !!:!||| ..! pHisValThrSerGlnLysLeuGlySerThrLysArgThrTyrVal---------Arg 457743 : CCACGTTACCTCACAAAAATTGGGAAGTACCAAGAGAACGTACGTG---------AGG : 457790 245 : IleIleHisAlaValAspIleHisArgLysAlaMetGlu : 257 :!:|||.!.||||||:!!||||||||||||||| ||| LeuIleGluAlaValAsnIleHisArgLysAlaTyrGlu 457791 : CTGATTGAAGCTGTTAACATACACAGAAAAGCTTACGAG : 457831 vulgar: CbirOr428 139 257 . KQ414815.1 457186 457831 + 136 M 23 69 G 1 0 M 53 159 S 0 2 5 0 2 I 0 299 3 0 2 S 1 1 M 23 69 G 3 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457187 457831 136 + . gene_id 1 ; sequence CbirOr428 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 457187 457416 . + . KQ414815.1 exonerate:protein2genome:local exon 457187 457416 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local splice5 457417 457418 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 457417 457719 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457718 457719 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457720 457831 . + . KQ414815.1 exonerate:protein2genome:local exon 457720 457831 . + . insertions 0 ; deletions 3 KQ414815.1 exonerate:protein2genome:local similarity 457187 457831 136 + . alignment_id 1 ; Query CbirOr428 ; Align 457187 140 69 ; Align 457256 164 159 ; Align 457721 218 69 ; Align 457790 244 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr428 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 335 -> 389 Target range: 458543 -> 458705 336 : TyrAsnIleProTrpTyrLeuAlaProLeuGlnIleGlnLysLeuIleLeuPheLeuL : 355 ||| ||||||||||||! !|||||||||!:!|||||||||! !:!!||||||:!!! TyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleS 458544 : TACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATAT : 458601 356 : euGlnArgSerSerLysAlaPheThrLeuAsnPheGlnGlyLeuPheIleAlaSerLe : 374 !:!!||||||!.!!:!!.! !:!!||| !.!. ! |||:!!.!!|||||||||.. erGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPh 458602 : CAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatcctt : 458658 375 : uGluCysPheAlaSerLeuAlaSerAlaSerValSerTyrPheThr : 389 .||| ||||||:!!:!!.!!!.!:!!!!!::: :::|||::: eGluPhePheAlaThrValThrLysSerTrpLeu***HisPheSer 458659 : cgaatttttcgccaCGGTAACAAAATCTTGGCtatgacatttttct : 458705 vulgar: CbirOr428 335 389 . KQ414815.1 458543 458705 + 123 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458544 458705 123 + . gene_id 2 ; sequence CbirOr428 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 458544 458705 . + . KQ414815.1 exonerate:protein2genome:local exon 458544 458705 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458544 458705 123 + . alignment_id 2 ; Query CbirOr428 ; Align 458544 336 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr428 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 310 -> 377 Target range: 489892 -> 490326 311 : LeuPheTyrIlePheIleAlaAsnAsnValGlyGlnGluIleIleAspAsnAsnAsnH : 330 ||||||||||||||||||..!||| !!:!!||||||! ::: ::: :::::!. LeuPheTyrIlePheIleCysAsnTyrIleGlyGlnGlyValLysAsnCysSerSerG 489893 : TTGTTTTACATATTCATTTGCAATTATATTGGACAGGGagtaaaaaattgcagttcTG : 489950 331 : isValPhePheThr{Al} >>>> Target Intron 1 >>>> {a}TyrAsn<- : 338 !.||||||!:! !{ } 230 bp {!}! !||| luValPheTyrAsp{Il}++ ++{e}CysAsnSe 489951 : AGGTATTTTATGAC{AT}gt.........................ag{A}TGCAACAG : 490204 339 : >IleProTrpTyrLeuAlaProLeuGlnIleGlnLysLeuIleLeuPheLeuLeuGln : 356 :!: !|||||| !||||||:!! ||||||||||||:!:|||.!!:!!:!!||| rValAsnTrpTyrThrAlaProIleAlaIleGlnLysLeuLeuLeuIleIleMetGln 490205 : CGTGAATTGGTACACGGCTCCAATTGCCATACAAAAATTGCTGTTGATCATTATGCAA : 490261 357 : ArgSerSerLysAlaPheThrLeuAsnPheGlnGlyLeuPheIleAlaSerLeuGluC : 376 !.!!!!! !::! !! !:!!:!!!...!! |||:!!!:!|||:!!|||!!!!!: AsnThrIleArgAsnSerSerIleThrLeuPheGlyMetTyrIleSerSerPheAspG 490262 : AATACTATACGAAATTCTTCAATAACACTCTTCGGAATGTATATATCGTCTTTCGATG : 490321 377 : ysPhe : 377 !!||| lyPhe 490322 : GTTTC : 490326 vulgar: CbirOr428 310 377 . KQ414815.1 489892 490326 + 110 M 24 72 S 0 2 5 0 2 I 0 226 3 0 2 S 1 1 M 2 6 G 0 3 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 489893 490326 110 + . gene_id 3 ; sequence CbirOr428 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 489893 489966 . + . KQ414815.1 exonerate:protein2genome:local exon 489893 489966 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 489967 489968 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 489967 490196 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 490195 490196 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 490197 490326 . + . KQ414815.1 exonerate:protein2genome:local exon 490197 490326 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 489893 490326 110 + . alignment_id 3 ; Query CbirOr428 ; Align 489893 311 72 ; Align 490198 336 6 ; Align 490207 338 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr435PNI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 99 -> 165 Target range: 485728 -> 485926 100 : SerValValSerProIleAsnGlySerGlnProProArgLeuGlnIleAlaThrGluA : 119 ..!:!!:!!! !|||:!:||| !!!!!::|||! !! !:!!! ||| !:!!|||: AspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnSerGluH 485729 : GACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACTCGGAAC : 485786 120 : snIleMetGlyGluGlnAsnPhePheHisLeuIleLeuLeuHisIleAspThrAlaMe : 138 !!.!!:!:! !:!!|||!!.!:!|||:!!! !||| ! !|||:!!! ! ! !:! isPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLeuPheVa 485787 : ATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCTCTTCGT : 485843 139 : tIlePheGlyAlaValLeuLeuLeuThrMetGlyIleLeuMetIleAlaTyrLeuGln : 157 :|||.!!||||||:!!:!!||||||!:! ||||||::::::||| :!!||| lIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIleIleGln 485844 : CATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATAATACAG : 485900 158 : HisThrCysGlyMetPheLysIle : 165 ||||||||||||:!!!:!! !||| HisThrCysGlyLeuTyrThrIle 485901 : CACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr435PNI 99 165 . KQ414815.1 485728 485926 + 133 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485729 485926 133 + . gene_id 1 ; sequence CbirOr435PNI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485729 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485729 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485729 485926 133 + . alignment_id 1 ; Query CbirOr435PNI ; Align 485729 100 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr435PNI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 88 -> 174 Target range: 448064 -> 448322 89 : PheLeuValSerGlnIleValValAlaPheSerSerValValSerProIleAsnGlyS : 108 ||| !:!! !:!!.!!|||||| ||| ...::::::! !|||!!:|||! !| PheThrLeuValGluPheValValHisPheLeuAspIleLeuMetProMetAsnValS 448065 : TTTACCTTGGTTGAGTTCGTGGTAcattttctcgatattttaATGCCAATGAACGTAT : 448122 109 : erGlnProProArgLeuGlnIleAlaThrGluAsnIleMetGlyGluGlnAsnPhePh : 127 || !! !! !..!|||! .!! !! !:!! !.!! ! !:!!.!.!!.||||| erThrArgHisGluLeuProPheLeuIleGlnCysPheCysAspGlnAspLysPhePh 448123 : CTACACGGCACGAGCTACCCTTCCTAATTCAATGTTTCTGTGATCAAGATAAATTCTT : 448179 128 : eHisLeuIleLeuLeuHisIleAspThrAlaMetIlePheGlyAlaValLeuLeuLeu : 146 ||||! !||||||:!! !:!: !..! !! |||!!.|||!.! !:!!:!!||| eHisTyrIleLeuValPheLeuIleValLeuThrIleLeuGlyGlySerValValLeu 448180 : CCACTATATATTAGTTTTCTTGATCGTTCTCACTATTTTGGGTGGAAGTGTGGTATTA : 448236 147 : ThrMetGlyIleLeuMetIleAlaTyrLeuGlnHisThrCysGlyMetPheLysIleA : 166 .!!! !! ! :!: !!:! !|||||| !||||||:!!|||||||||| AlaThrThrThrThrTyrLeuIlePheSerGlnHisCysCysGlyLeuPheLysIleA 448237 : GCCACTACAACGACTTACTTGATATTCAGTCAACATTGTTGTGGATTGTTCAAAATTG : 448296 167 : laCysTyrArgIleGluAsnAlaMet : 174 || ! !! ..!||| !!.!|||||| laGly***GluIleMetThrAlaMet 448297 : CAGGGTAAGAAATTATGACTGCTATG : 448322 vulgar: CbirOr435PNI 88 174 . KQ414815.1 448064 448322 + 115 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448065 448322 115 + . gene_id 2 ; sequence CbirOr435PNI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448065 448322 . + . KQ414815.1 exonerate:protein2genome:local exon 448065 448322 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448065 448322 115 + . alignment_id 2 ; Query CbirOr435PNI ; Align 448065 89 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr439 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 130 -> 211 Target range: 485686 -> 485926 131 : LeuPheIlePheThrLeuLeuProPheValProArgIlePheGlyIlePhePheLeuV : 150 |||.!!:!:.!.! !||| ! !||| ! !!!!|||.!.! !|||!!..!!! !: LeuLeuValLeuIleLeuGlyIlePheAsnAsnSerIleLeuAspIleLeuIleProL 485687 : TTACTTGTGCTGATTCTTGGTATATTTAACAACAGTATTCTGGACATTTTGATTCCTT : 485744 151 : alAsnLysSerGluProHisArgAsnMetTyrMetArgThrGluTyrPheValAspGl : 169 !!||| ! !!!...||| |||!..!!: !!!:!.!:!!|||:!!||||||||||| euAsnTyrThrArgPro---ArgThrIleProIleAsnSerGluHisPheValAspGl 485745 : TGAATTACACTCGTCCG---CGGACGATTCCTATAAACTCGGAACATTTTGTCGATCA : 485798 170 : nGluLysTyrPheTyrSerIleLeuLeuHisLeuTyrAlaAlaLeuTyrIleValGly : 188 |:!!|||||||||||| !!||| ! !|||:!! ! ! !:!! !|||! !!.! nGlnLysTyrPheTyrProIleAlaAlaHisValValLeuPheValIleIleGlyAla 485799 : GCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCTCTTCGTCATTATTGGCGCG : 485855 189 : GlyIleLeuIleGlyThrGlyIleLeuMetThrGlyTyrSerSerTyrPheCysGlyL : 208 !:!!|||:!!.!!||| ||||||::: ..! ! !..!:!! !||||||| IleValLeuLeuSerThrGluIleLeuIleMetAlaIleIleGlnHisThrCysGlyL 485856 : ATAGTATTACTCAGCaccgaaatattaattatggCGATAATACAGCACACCTGTGGTT : 485915 209 : euPheAsnIle : 211 ||!:!!..||| euTyrThrIle 485916 : TGTATACAATC : 485926 vulgar: CbirOr439 130 211 . KQ414815.1 485686 485926 + 108 M 25 75 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485687 485926 108 + . gene_id 1 ; sequence CbirOr439 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485687 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485687 485926 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 485687 485926 108 + . alignment_id 1 ; Query CbirOr439 ; Align 485687 131 75 ; Align 485762 157 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr426PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 265 -> 334 Target range: 489880 -> 490320 266 : LeuLysValTyrLeuLeuTyrIlePheIleCysAsnTyrIleGlyGlnGluLeuThrA : 285 ||| :!! ! |||!!!||||||||||||||||||||||||||||||! ::: : LeuCysLeuGlnLeuPheTyrIlePheIleCysAsnTyrIleGlyGlnGlyValLysA 489881 : TTGTGTCTGCAGTTGTTTTACATATTCATTTGCAATTATATTGGACAGGGagtaaaaa : 489938 286 : spHisTyrAsnHisMetPheIleSer{Il} >>>> Target Intron 1 >>>> : 294 :: ::!.!.:!:||| !..!{||} 233 bp snCysSerSerGluValPheTyrAsp{Il}++ - 489939 : attgcagttcTGAGGTATTTTATGAC{AT}gt.........................t : 490198 295 : {e}TyrSerValGlnTrpTyrValThrProLeuHisIleGlnLysIleIleLeuPhe : 312 {|} !!||||||.!.||||||..!.!!|||:!! !|||||||||:!::!:|||.!! +{e}AsnSerValAsnTrpTyrThrAlaProIleAlaIleGlnLysLeuLeuLeuIle 490199 : g{C}AACAGCGTGAATTGGTACACGGCTCCAATTGCCATACAAAAATTGCTGTTGATC : 490252 313 : LeuLeuGlnArgGlyThrLysAsnPheTyrPheValPheGlyGlyIleLeuValMetS : 332 :!!:!!|||!.! !! !::!|||! !! .!...!.!! !|||!!:! !:!! !| IleMetGlnAsnThrIleArgAsnSerSerIleThrLeuPheGlyMetTyrIleSerS 490253 : ATTATGCAAAATACTATACGAAATTCTTCAATAACACTCTTCGGAATGTATATATCGT : 490312 333 : erIleGlu : 334 ||.!!!!: erPheAsp 490313 : CTTTCGAT : 490320 vulgar: CbirOr426PI 265 334 . KQ414815.1 489880 490320 + 109 M 28 84 S 0 2 5 0 2 I 0 229 3 0 2 S 1 1 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 489881 490320 109 + . gene_id 1 ; sequence CbirOr426PI ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 489881 489966 . + . KQ414815.1 exonerate:protein2genome:local exon 489881 489966 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 489967 489968 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 489967 490199 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 490198 490199 . + . intron_id 0 ; splice_site "TG" KQ414815.1 exonerate:protein2genome:local cds 490200 490320 . + . KQ414815.1 exonerate:protein2genome:local exon 490200 490320 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 489881 490320 109 + . alignment_id 1 ; Query CbirOr426PI ; Align 489881 266 84 ; Align 490201 295 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr426PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 167 -> 218 Target range: 478641 -> 478794 168 : GluTyrPheIleAspGlnGlyLysTyrTyrTyrCysIleLeuLeuHisMetAspValS : 187 |||||||||||||||::: ||||||::: |||::: |||:!! !!:!!| GluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValTyrLeuS 478642 : GAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGTACCTGT : 478699 188 : erLeuPheMetGlyAlaThrValLeuValAlaThrGlyThrLeuLeuPheGlyCysMe : 206 |||||.!.||| !|||||||||! !|||||||||! !:!!! !:!!.!! !!! || erLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMetTrpMe 478700 : CGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTATGTGGAT : 478756 207 : tLysTyrMetCysGlyLeuPheArgIleAlaSerTyr : 218 | !:!!! !||||||!:!!.!||| !!!!||| tValHisThrIleGlyLeuTyrAsnIleIleArgTyr 478757 : GGTGCATACTATCGGCTTGTATAATATCATAAGGTAT : 478794 vulgar: CbirOr426PI 167 218 . KQ414815.1 478641 478794 + 103 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478642 478794 103 + . gene_id 2 ; sequence CbirOr426PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478642 478794 . + . KQ414815.1 exonerate:protein2genome:local exon 478642 478794 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478642 478794 103 + . alignment_id 2 ; Query CbirOr426PI ; Align 478642 168 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr431INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 121 -> 223 Target range: 448019 -> 448322 122 : LeuThrIleThrLeuIleValLeuLeuMetCysGlyValPheThrAsnCysValMetI : 141 ||| ...|||::: |||:!!!!! ! ..!:!!.!!!:! ! !:!!:!: LeuIlePheThrIleSerValValPheAlaLeuSerLeuIleSerPheThrLeuValG 448020 : ctcattttcacaatttcagtGGTGTTTGCCTTGTCTTTAATTAGCTTTACCTTGGTTG : 448077 142 : leTyrSerProTyrIleLeuAspValValMetProLysAsnGluSerTyrThrIleHi : 160 !:! ! !:::...||||||::::::||||||! !|||! !||| ||| || luPheValValHisPheLeuAspIleLeuMetProMetAsnValSer---ThrArgHi 448078 : AGTTCGTGGTAcattttctcgatattttaATGCCAATGAACGTATCT---ACACGGCA : 448131 161 : sMetMetGluMetValThrLysTyrPheIleValSerGluLysTyrTyrPheLeuPhe : 179 | !:!: .!.:!!! !:!!! !||| !! !..!!!:|||!:!!:! !! !.!. sGluLeuProPheLeuIleGlnCysPheCysAspGlnAspLysPhePheHisTyrIle 448132 : CGAGCTACCCTTCCTAATTCAATGTTTCTGTGATCAAGATAAATTCTTCCACTATATA : 448188 180 : LeuValHisLeuAsnValThrCysSerAlaGluLeuIleValLeuIleAlaThrAlaT : 199 |||||| !|||! !||| ! !! ! !! !! !|||:!!:!!||||||.!!| LeuValPheLeuIleValLeuThrIleLeuGlyGlySerValValLeuAlaThrThrT 448189 : TTAGTTTTCTTGATCGTTCTCACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAA : 448248 200 : hrMetLeuMetSerValPheLysHisIleCysGlyMetPheGluIleAlaSerTyrAr : 218 ||! ! !:!!! ! !! !:!!||| !||||||:!!|||:!!||||||.!!!! .. hrThrTyrLeuIlePheSerGlnHisCysCysGlyLeuPheLysIleAlaGly***Gl 448249 : CGACTTACTTGATATTCAGTCAACATTGTTGTGGATTGTTCAAAATTGCAGGGTAAGA : 448305 219 : gIleGluGlnAlaMet : 223 !||| ! |||||| uIleMetThrAlaMet 448306 : AATTATGACTGCTATG : 448322 vulgar: CbirOr431INT 121 223 . KQ414815.1 448019 448322 + 106 M 35 105 G 1 0 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448020 448322 106 + . gene_id 1 ; sequence CbirOr431INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448020 448322 . + . KQ414815.1 exonerate:protein2genome:local exon 448020 448322 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 448020 448322 106 + . alignment_id 1 ; Query CbirOr431INT ; Align 448020 122 105 ; Align 448125 158 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr431INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 119 -> 214 Target range: 457129 -> 457411 120 : LysArgLeuThrIleThrLeuIleValLeuLeuMetCysGlyValPheThrAsnCysV : 139 |||::: ! !:!!! !|||! ! ! ||||||!.!.!...!! ! !. LysLysLysProSerMetIleThrValSerThrTyrCysGlyAlaLeuValIleThrT 457130 : aaaaaaaaaccttcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCA : 457187 140 : alMetIleTyrSerProTyrIleLeuAspValValMetProLysAsnGluSerTyrTh : 158 .!:!! ! !! !||| :!!||||||:!!|||:!:||| !||||||||| ! ! hrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgPr 457188 : CGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCC : 457244 159 : rIleHisMetMetGluMetValThrLysTyrPheIleValSerGluLysTyrTyrPhe : 177 ! !.!.:!: :!:..!.!!:!!||||||:!!! !! !:!!|||||| ! oCysGluLeuTyr---LeuThrAlaGluTyrPheValAspMetLysLysTyrMetHis 457245 : CTGTGAGTTATAC---CTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCAT : 457298 178 : LeuPheLeuValHisLeuAsnValThrCysSerAlaGluLeuIleValLeuIleAlaT : 197 ! !.!!:!!!.!|||:!!! !..! ! ! !! ! !! !..!|||! !|||! TyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaA 457299 : TATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTA : 457358 198 : hrAlaThrMetLeuMetSerValPheLysHisIleCysGlyMetPheGluIle : 214 .!! !:!!:!:|||!!:!!! ! ! !|||:!!||||||:!!|||:!!:!! snGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457359 : ACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr431INT 119 214 . KQ414815.1 457129 457411 + 106 M 43 129 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457130 457411 106 + . gene_id 2 ; sequence CbirOr431INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457130 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457130 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457130 457411 106 + . alignment_id 2 ; Query CbirOr431INT ; Align 457130 120 129 ; Align 457259 164 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr432PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 121 -> 223 Target range: 448019 -> 448322 122 : LeuThrIleThrLeuIleValValThrValCysGlyThrPheSerThrAlaIleIleV : 141 ||| ...|||::: |||||| !!.!! ..! !.!!||| !.!!:!::!!! LeuIlePheThrIleSerValValPheAlaLeuSerLeuIleSerPheThrLeuValG 448020 : ctcattttcacaatttcagtGGTGTTTGCCTTGTCTTTAATTAGCTTTACCTTGGTTG : 448077 142 : alTyrAlaProTyrIleLeuAspValValMetProLysAsnGluSerTyrAlaIlePr : 160 !!:!!.! !:::...||||||::::::||||||! !|||! !||| ! ! luPheValValHisPheLeuAspIleLeuMetProMetAsnValSerThrArgHisGl 448078 : AGTTCGTGGTAcattttctcgatattttaATGCCAATGAACGTATCTACACGGCACGA : 448134 161 : oIleMetGluIleValThrLysTyrPheIleValSerGluLysTyrTyrPheLeuIle : 179 !:!! :!!:!! :!!! !||| !! !..!!!:|||!:!!:! !! !||| uLeuProPheLeuIle---GlnCysPheCysAspGlnAspLysPhePheHisTyrIle 448135 : GCTACCCTTCCTAATT---CAATGTTTCTGTGATCAAGATAAATTCTTCCACTATATA : 448188 180 : LeuValHisMetAsnIleThrCysSerAlaGluLeuIleValMetIleGlyThrGlyT : 199 |||||| !:!!! !:!! ! !! ! !! !! !|||:!::!!!.!||| !| LeuValPheLeuIleValLeuThrIleLeuGlyGlySerValValLeuAlaThrThrT 448189 : TTAGTTTTCTTGATCGTTCTCACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAA : 448248 200 : hrMetIleValSerTyrPheLysHisAlaCysGlyIlePheGluIleAlaSerTyrAr : 218 ||! !:!!! !!:! !:!!|||..!||||||:!:|||:!!||||||.!!!! .. hrThrTyrLeuIlePheSerGlnHisCysCysGlyLeuPheLysIleAlaGly***Gl 448249 : CGACTTACTTGATATTCAGTCAACATTGTTGTGGATTGTTCAAAATTGCAGGGTAAGA : 448305 219 : gIleGluGlnAlaMet : 223 !||| ! |||||| uIleMetThrAlaMet 448306 : AATTATGACTGCTATG : 448322 vulgar: CbirOr432PSE 121 223 . KQ414815.1 448019 448322 + 102 M 44 132 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448020 448322 102 + . gene_id 1 ; sequence CbirOr432PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448020 448322 . + . KQ414815.1 exonerate:protein2genome:local exon 448020 448322 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 448020 448322 102 + . alignment_id 1 ; Query CbirOr432PSE ; Align 448020 122 132 ; Align 448152 167 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr434IC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 85 -> 175 Target range: 460973 -> 461240 86 : ValLeuThrSerPheThrMetCysSerMetPheThrPheMetLeuLeuProPheTrpP : 105 |||... :!!.!!..!.!.! !!!:!:.!.! !.!! !|||:!!|||!:!! !| ValPheLeuAlaIleValPheLeuCysLeuIleMetIleAlaLeuIleProTyrLeuP 460974 : gtctttttaGCAATTGTATTCTTATGCCTAATAATGATCGCGTTAATTCCGTATTTGC : 461031 106 : roArgLeuLeuLysIleValLeuLeuIleAsnGluSerGlnThrLeuGlyLysLeuGl : 124 |||||:!!!!! !|||||| !! ! |||..!!!!!:: !!||| |||:!!! roArgIlePheAlaIleValThrHisGlnAsnArgThrArgProLeu---LysIlePr 461032 : CGCGGATCTTCGCGATTGTGACGCATCAGAACAGAACTCGTCCGTTG---AAAATACC : 461085 125 : nIleThrThrGluTyrPheIleAsnGlnGluGlnTyrLeuTyrLeuIleLeuLeuHis : 143 !|||! !..!|||||| !:!::!!!!..!.:!!|||!!! !!||||||:!!|||||| oIleIleValGluTyrHisValAspHisAsnGluTyrPheAspLeuIleIleLeuHis 461086 : GATCATCGTGGAGTATCACGTGGATCATAACGAGTACTTCGATCTGATCATATTACAC : 461142 144 : IleAspThrAlaValTrpIleGlySerAlaThrLeuValGlyThrGlyLeuValIleI : 163 |||:!! !..! !!::||||||! !..!..!:!!:!!..!.!!! !:!!..!! !: IleAsnPheCysHisPheIleGlyPheCysValValIleSerAlaGluValThrAsnL 461143 : ATTAACTTCTGCCACTTTATCGGCTTCTGCGTTGTTATATCTGCTGAAGTGACAAATT : 461202 164 : leGluTyrCysLysHisMetCysGlyIlePheSerIle : 175 !:! ! !...||||||!!:|||..!:!:|||..!:!! euValLeuAlaLysHisIleCysSerLeuPheAspLeu 461203 : TGGTACTTGCGAAACACATTTGCTCGTTGTTCGATCTT : 461240 vulgar: CbirOr434IC 85 175 . KQ414815.1 460973 461240 + 116 M 35 105 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 460974 461240 116 + . gene_id 1 ; sequence CbirOr434IC ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 460974 461240 . + . KQ414815.1 exonerate:protein2genome:local exon 460974 461240 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 460974 461240 116 + . alignment_id 1 ; Query CbirOr434IC ; Align 460974 86 105 ; Align 461079 122 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr434IC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 85 -> 175 Target range: 475503 -> 475770 86 : ValLeuThrSerPheThrMetCysSerMetPheThrPheMetLeuLeuProPheTrpP : 105 :::::!||| !.!...! !!!!!:||||||.!.!!:||||||! !|||! ! IleValThrValLeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerS 475504 : attgtTACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGT : 475561 106 : roArgLeuLeuLysIleValLeuLeuIleAsnGluSerGlnThrLeuGlyLysLeuGl : 124 !!!:!:!!||| ! !:!!|||! !:!:|||||||||!:: !! ! !!...||| erLysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeu-- 475562 : CTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTG-- : 475618 125 : nIleThrThrGluTyrPheIleAsnGlnGluGlnTyrLeuTyrLeuIleLeuLeuHis : 143 ||| |||||||||||||||:!!:!!:!!|||!!!||||||! !:!!:!!:!! -IleArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyr 475619 : -AtacgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTAT : 475672 144 : IleAspThrAlaValTrpIleGlySerAlaThrLeuValGlyThrGlyLeuValIleI : 163 !..!.!!:!! :!: !.!!.!!|||! !|||!.!|||! ! !:!!.!!! GlnThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheT 475673 : CAGACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTA : 475732 164 : leGluTyrCysLysHisMetCysGlyIlePheSerIle : 175 ! !!::! :!!||| ...:::|||...||| hrMetTrpLeuGlnHisCysIleSerLeuPheGluIle 475733 : CCATGTGGTTGCAACATTGCATaagtttatttgaaatt : 475770 vulgar: CbirOr434IC 85 175 . KQ414815.1 475503 475770 + 112 M 38 114 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475504 475770 112 + . gene_id 2 ; sequence CbirOr434IC ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475504 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475504 475770 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 475504 475770 112 + . alignment_id 2 ; Query CbirOr434IC ; Align 475504 86 114 ; Align 475618 125 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr438 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 111 -> 215 Target range: 457105 -> 457411 112 : IleIleLysGluCysGlyHisGluAlaLysArgPheThrMetLeuMetLeuLeuTyrG : 131 !!::!:||| !||| :::::: |||::: ::!|||:!!! :!!! ! ! MetLeuLys***CysLeuAsnAspLysLysLysProSerMetIleThrValSerThrT 457106 : ATGTTGAAATGATGtctaaatgataaaaaaaaaccttcGATGATTACAGTTTCTACTT : 457163 132 : lyAlaSerAsnIleMetIleThrCysPheLeuProValPheProArgIleLeuArgTh : 150 !..!.!! :!::!:|||||| |||! !:!!||||||! !:!!||| !! yrCysGlyAlaLeuValIleThrThr---LeuGlnLeuPheProIleLeuLeuAspIl 457164 : ATTGTGGCGCACTGGTTATTACCACG---TTGCAACTCTTTCCGATATTACTCGACAT : 457217 151 : rPheThrSerIleAsnMetSerGlyGluGlnPheMetIleAspIleMetArgGluTyr : 169 ! ! ..! !!:!:||| ||| ...! ! ! !:!! !!:!!! !|||||| eValValProLeuAsnGluSer---ArgProCysGluLeuTyrLeuThrAlaGluTyr 457218 : TGTGGTCCCATTGAACGAATCA---CGCCCCTGTGAGTTATACCTTACAGCGGAATAC : 457271 170 : PheValAspGlnAspLysTyrTyrTyrTyrIleLeuLeuHisMetAspValSerTyrI : 189 |||||||||..! ! |||||| :!!||||||:!! !|||!!: !..!!!! : PheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuL 457272 : TTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTAC : 457331 190 : leIleGlyIleIleValIleProAlaThrGlySerLeuLeuPheGlyGlyMetLysTy : 208 !:|||!.! !! !..!:!! !!|||!.!! !|||||||||.!. !..!:!: !:! euIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHi 457332 : TGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCA : 457388 209 : rIleCysGlyLeuPheLysIle : 215 !:!!|||||||||||||||:!! sValCysGlyLeuPheLysLeu 457389 : CGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr438 111 215 . KQ414815.1 457105 457411 + 116 M 28 84 G 1 0 M 17 51 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457106 457411 116 + . gene_id 1 ; sequence CbirOr438 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457106 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457106 457411 . + . insertions 0 ; deletions 2 KQ414815.1 exonerate:protein2genome:local similarity 457106 457411 116 + . alignment_id 1 ; Query CbirOr438 ; Align 457106 112 84 ; Align 457190 141 51 ; Align 457241 159 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr446 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 99 -> 211 Target range: 456858 -> 457405 100 : AsnGluLeuArgAspGluAsnGluIleAlaIleIleLysLysTyrAlaAsnSerAlaG : 119 !!...!|||!:!:!! !.!.||||||! ||||||:::||||||||||||.!!!.!. LysSerLeuLysAsnMetGluGluIleGluIleIleArgLysTyrAlaAsnGlyGlyA 456859 : AAATCATTGAAGAACATGGAAGAAATCGagattattcgaaaatatgcGAACGGTGGCA : 456916 120 : luTyrIleAlaIlePheIleThr{L} >>>> Target Intron 1 >>>> {eu : 127 .! .!!.!!:!! |||.!!{:} 214 bp {!! rgArgPheThrLeuAlaIleAla{I}++ ++{le 456917 : GGAGATTTACACTTGCAATAGCA{A}gt.........................ag{TT : 457155 128 : }TyrThrAlaCysCysGlyPheIleIleThrPheThrGlnIlePheProArgIleLeu : 146 }! !||| !||| !!!.!.!.:!!|||||| !|||:!!||||||! !:!!||| }SerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeu 457156 : }TCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTC : 457211 147 : SerThrPheLeuLeuValAsnIleSerArgProLeuTyrAsnValGlnPheValThrG : 166 ..!! ! ! :!!! !:!!||| !|||||||||! ! .!.:!! ! .!!..!.!!| AspIleValValProLeuAsnGluSerArgProCys---GluLeuTyrLeuThrAlaG 457212 : GACATTGTGGTCCCATTGAACGAATCACGCCCCTGT---GAGTTATACCTTACAGCGG : 457268 167 : luTyrPheIleAspLysGluLysAsnPheTyrLeuIlePheIleHisIleCysAlaSe : 185 ||||||||:!!|||! !:!!||| !!.!.:!!! !|||.!! |||||| !.!!!! luTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCy 457269 : AATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTG : 457325 186 : rLeuTyrIleGlyThrValAlaPheAlaGlyThrSerLeuIleSerPheThrTyrPhe : 204 !||| |||!.!.!!..!.!!!!..!!!.!!.!..!! !:!! !.!.||| !! ! sLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnVal 457326 : CCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTA : 457382 205 : LysHisIleCysGlyLeuPhe : 211 !|||:!!|||||||||||| LeuHisValCysGlyLeuPhe 457383 : CTGCACGTTTGTGGATTGTTC : 457405 vulgar: CbirOr446 99 211 . KQ414815.1 456858 457405 + 150 M 27 81 S 0 1 5 0 2 I 0 210 3 0 2 S 1 2 M 31 93 G 1 0 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 456859 457405 150 + . gene_id 1 ; sequence CbirOr446 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 456859 456940 . + . KQ414815.1 exonerate:protein2genome:local exon 456859 456940 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 456941 456942 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 456941 457154 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457153 457154 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457155 457405 . + . KQ414815.1 exonerate:protein2genome:local exon 457155 457405 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 456859 457405 150 + . alignment_id 1 ; Query CbirOr446 ; Align 456859 100 81 ; Align 457157 128 93 ; Align 457250 160 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr446 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 333 -> 392 Target range: 458543 -> 458798 334 : TyrSerValHisTrpTyrAlaAlaProIleArgIleGlnLysLeuIleLeuPheLeuL : 353 |||! !:!!! |||||| !||||||:!!||||||||||||! !:!!||||||:!!! TyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleS 458544 : TACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATAT : 458601 354 : euGlnArgSerCysLysThrHisGlyIleLysLeuGlyGlyIlePheIleAlaSerLe : 372 !:!!|||||| !:!..! !..!:!: :!! !|||!!:.!!|||||||||.. erGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPh 458602 : CAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatcctt : 458658 373 : uGluGlyPheAlaAla >>>> Target Intron 1 >>>> LeuSerAlaThrS : 382 .||| ||||||.!! 78 bp !!!! ! !.!!: eGluPhePheAlaThr++ ++PheMetLysAlaA 458659 : cgaatttttcgccaCGgt.........................agTTCATGAAAGCAG : 458766 383 : erLeuSerTyrPheThrValLeuTyrSerLeu : 392 !!:!!||||||! !|||||||||||||||:!! laMetSerTyrCysThrValLeuTyrSerIle 458767 : CGATGTCCTATTGCACGGTATTATATTCCATC : 458798 vulgar: CbirOr446 333 392 . KQ414815.1 458543 458798 + 127 M 44 132 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458544 458798 127 + . gene_id 2 ; sequence CbirOr446 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 458544 458675 . + . KQ414815.1 exonerate:protein2genome:local exon 458544 458675 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 458676 458677 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 458676 458753 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 458752 458753 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458754 458798 . + . KQ414815.1 exonerate:protein2genome:local exon 458754 458798 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458544 458798 127 + . alignment_id 2 ; Query CbirOr446 ; Align 458544 334 132 ; Align 458754 378 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr446 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 327 -> 381 Target range: 490182 -> 490344 328 : AsnIlePheSerAlaAlaTyrSerValHisTrpTyrAlaAlaProIleArgIleGlnL : 347 ||||||.!!!:! !..! !!||||||:!!||||||.!!||||||||| !||||||| AsnIleLeuAsnArgCysAsnSerValAsnTrpTyrThrAlaProIleAlaIleGlnL 490183 : AACATACTTAATAGATGCAACAGCGTGAATTGGTACACGGCTCCAATTGCCATACAAA : 490240 348 : ysLeuIleLeuPheLeuLeuGlnArgSerCysLysThrHisGlyIleLysLeuGlyGl : 366 |||||:!:|||.!!:!!:!!|||!.!!!! ::!!.! !..!|||! !||| !|| ysLeuLeuLeuIleIleMetGlnAsnThrIleArgAsnSerSerIleThrLeuPheGl 490241 : AATTGCTGTTGATCATTATGCAAAATACTATACGAAATTCTTCAATAACACTCTTCGG : 490297 367 : yIlePheIleAlaSerLeuGluGlyPheAlaAlaLeuSerAlaThr : 381 |!!:!:!|||:!!|||!!!!!:|||||| ! !:!!!:! !||| yMetTyrIleSerSerPheAspGlyPhePheMetValAsnAsnThr 490298 : AATGTATATATCGTCTTTCGATGGTTTCTTCATGGTAAATAACAcg : 490344 vulgar: CbirOr446 327 381 . KQ414815.1 490182 490344 + 122 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 490183 490344 122 + . gene_id 3 ; sequence CbirOr446 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 490183 490344 . + . KQ414815.1 exonerate:protein2genome:local exon 490183 490344 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 490183 490344 122 + . alignment_id 3 ; Query CbirOr446 ; Align 490183 328 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr446 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 163 -> 285 Target range: 478635 -> 479402 164 : ValThrGluTyrPheIleAspLysGluLysAsnPheTyrLeuIlePheIleHisIleC : 183 ..!||||||||||||||||||::::::||| ||| ...|||... |||:!:! ThrThrGluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValT 478636 : ACCACGGAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGT : 478693 184 : ysAlaSerLeuTyrIleGlyThrValAlaPheAlaGlyThrSerLeuIleSerPheTh : 202 ! !|||||| !!: !.!!..!!.!!:!!.!!.!|||..!! ! ! !.!!! yrLeuSerLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMe 478694 : ACCTGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTAT : 478750 203 : rTyrPheLysHisIleCysGlyLeuPheCysIleAlaSerTyrHisMet >>>> Ta : 219 !!::.!. !|||! ! !||||||!:! !||| !!!!|||:!!..! tTrpMetValHisThrIleGlyLeuTyrAsnIleIleArgTyrAsnGln-- 478751 : GTGGATGGTGCATACTATCGGCTTGTATAATATCATAAGGTATAATCAGca....... : 478803 220 : rget Intron 1 >>>> GluGlnSerMetMetLeuAsnIleHisLysLysThrAs : 231 304 bp ... ! !!!!:... !! !:!!!.!||| ! !|| +-SerTyrArgIleGlnLysIleValArgLysAspLeuAs 478804 : ..................acAGTTATCGAATTCAAAAAATCGTTCGTAAGGACTTGAA : 479141 232 : nLeuTrpAsnAsnMetGluIleAspLysLysIleIleHisAlaValAspIleHisArg : 250 | ! ! |||! !.!.||| ! ||| :!:|||||||||:!!! !! !|||||| nSerArgLeuAsnThrAsnIleLysLysGlyValIleHisAlaIleAlaThrHisArg 479142 : CAGTCGTTTGAATACGAACATTAAAAAAGGTGTGATACATGCCATAGCTACTCATAGA : 479198 251 : ThrAlaIle{Gl} >>>> Target Intron 2 >>>> {u}LeuSerGluPheP : 259 |||||||||{:!} 97 bp {!}!!!! !.!. ! ThrAlaIle{Gl}++ ++{n}PhePheHisAspV 479199 : ACAGCAATA{CA}gt.........................ag{G}TTTTTTCACGATG : 479322 260 : heIleSerAsnPheAsnGlyThrTyrPheCysValMetLeuIleSerValLeuCysLe : 278 ! |||!!!:!!! !! !.!!||| ! !:!!:!:|||.!!:!!:!! !! || alIleArgAspSerIleProAlaTyrSerValLeuLeuLeuPheAlaIleThrSerLe 479323 : TGATAAGGGACTCTATACCAGCGTACAGTGTTCTCCTTTTGTTCGCTATCACCTCGTT : 479379 279 : uSerLeuAsnLeuTyrLysLeu : 285 ||||:!!|||||||||::::!: uSerIleAsnLeuTyrArgVal 479380 : GAGCATTAATTTGTATCGTGTg : 479402 vulgar: CbirOr446 163 285 . KQ414815.1 478635 479402 + 119 M 55 165 5 0 2 I 0 300 3 0 2 M 35 105 S 0 2 5 0 2 I 0 93 3 0 2 S 1 1 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478636 479402 119 + . gene_id 4 ; sequence CbirOr446 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 478636 478800 . + . KQ414815.1 exonerate:protein2genome:local exon 478636 478800 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 478801 478802 . + . intron_id 1 ; splice_site "CA" KQ414815.1 exonerate:protein2genome:local intron 478801 479104 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 479103 479104 . + . intron_id 0 ; splice_site "AC" KQ414815.1 exonerate:protein2genome:local cds 479105 479211 . + . KQ414815.1 exonerate:protein2genome:local exon 479105 479211 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 479212 479213 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 479212 479308 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 479307 479308 . + . intron_id 1 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 479309 479402 . + . KQ414815.1 exonerate:protein2genome:local exon 479309 479402 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478636 479402 119 + . alignment_id 4 ; Query CbirOr446 ; Align 478636 164 165 ; Align 479105 219 105 ; Align 479310 255 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr449PN Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 76 -> 129 Target range: 478635 -> 478794 77 : ThrThrGluTyrPheValAspGluGluLysTyrPheTyrPheIleMetLeuHisLeuT : 96 |||||||||||||||:!!||||||:::||||||||| ||||||::: |||:!!| ThrThrGluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValT 478636 : ACCACGGAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGT : 478693 97 : yrValAlaHisTyrIleAlaGlyGlyThrLeuIleGlyAlaGlyValLeuLeuThrGl : 115 ||:!!:!! !!: !!.! !..!! !:!!!.!.!!! ! !! !:!!! ! yrLeuSerLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMe 478694 : ACCTGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTAT : 478750 116 : yTyrPheThrTyrPheCysGlyLeuPheAsnIleAlaSerTyr : 129 !!::.!...!:!! ! !||||||!:!|||||| !!!!||| tTrpMetValHisThrIleGlyLeuTyrAsnIleIleArgTyr 478751 : GTGGATGGTGCATACTATCGGCTTGTATAATATCATAAGGTAT : 478794 vulgar: CbirOr449PN 76 129 . KQ414815.1 478635 478794 + 100 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478636 478794 100 + . gene_id 1 ; sequence CbirOr449PN ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478636 478794 . + . KQ414815.1 exonerate:protein2genome:local exon 478636 478794 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478636 478794 100 + . alignment_id 1 ; Query CbirOr449PN ; Align 478636 77 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr440 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 324 -> 387 Target range: 128569 -> 128306 325 : PheThrThrValTyrAsnThrGluTrpTyrIleAlaProLeuGlnThrGlnLysLeuI : 344 !!.||| ! !||| !.!!:!!||||||! !||||||:::::::::||||||:::: LeuThrPheSerTyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetL 128569 : TTAACATTTAGCTATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgC : 128512 345 : leLeuPheLeuLeuGlnArgAsnAsnLysProPheIleLeuAsnIleArgGlyIleVa : 363 !!|||||||||:!!!!.||| !! :!!|||! !! |||!!.:!:!:!..!:!!|| euLeuPheLeuMetHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuVa 128511 : TACTGTTCCTCATGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGT : 128455 364 : lIleSerSerMetGluCysPheThrLys >>>> Target Intron 1 >>>> L : 373 | !:!!.!!! |||! !:!.!!! 74 bp : lAlaAlaGlyAsnGluLeuTyrAlaThr++ ++M 128454 : TGCCGCGGGTAACGAGTTGTACGCTACCgt.........................aga : 128351 374 : euMetLysAlaSerIleSerTyrPheThrValIleTyrSerIle : 387 !!:!!:!!.!!.!!.!!|||||||||||||||:!!||||||:!: etValGlnThrGlyPheSerTyrPheThrValLeuTyrSerLeu 128350 : TGGTGCAGACTGGTTTCTCCTACTTTACGGTTCTCTACTCGTTG : 128307 vulgar: CbirOr440 324 387 . KQ414817.1 128569 128306 - 117 M 48 144 5 0 2 I 0 70 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128307 128569 117 - . gene_id 1 ; sequence CbirOr440 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128569 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128569 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128307 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128307 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128307 128569 117 - . alignment_id 1 ; Query CbirOr440 ; Align 128570 325 144 ; Align 128352 373 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr445 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 323 -> 395 Target range: 128590 -> 128300 324 : ThrGluHisTyrAsnAspMetPheSerTyrAlaTyrAsnValArgTrpTyrThrAlaP : 343 |||... !!:!::! ! !!.!!!!:!::!||| !!.!!:!||||||! !|||| ThrSerCysPheSerIleProLeuThrPheSerTyrCysAlaLysTrpTyrLysAlaP 128590 : ACATCTTGTTTCTCTATTCCTTTAACATTTAGCTATTGTGCAAAATGGTACAAAGCCC : 128533 344 : roIleHisIleGlnLysLeuIleLeuPheLeuLeuGlnArgSerCysLysProTyrGl : 362 ||::: ||||||::::!!|||||||||:!!!!.|||! ! :!!|||! ! ! roValLysSerGlnLysMetLeuLeuPheLeuMetHisArgPheMetGluProCysAr 128532 : CAGtaaaatctcaaaaaatgCTACTGTTCCTCATGCACAGATTCATGGAACCGTGCAG : 128476 363 : yLeuLysLeuGlyGlyIlePheIleAlaSerLeuLysGlyPheAlaSer >>>> Ta : 379 !||||||||| !..!:!! !! !|||.!! !:!! !!:!|||!!! gLeuLysLeuLysSerLeuValAlaAlaGlyAsnGluLeuTyrAlaThr++ 128475 : GCTAAAACTGAAATCCTTAGTTGCCGCGGGTAACGAGTTGTACGCTACCgt....... : 128423 380 : rget Intron 1 >>>> LeuSerThrThrSerValSerTyrPheThrValIleTy : 391 74 bp :!! ! !|||.!! !!|||||||||||||||:!!|| ++MetValGlnThrGlyPheSerTyrPheThrValLeuTy 128422 : ..................agaTGGTGCAGACTGGTTTCTCCTACTTTACGGTTCTCTA : 128315 392 : rSerThrGlnLys : 395 |||| !|||:!! rSerLeuGlnGlu 128314 : CTCGTTGCAAGAA : 128301 vulgar: CbirOr445 323 395 . KQ414817.1 128590 128300 - 126 M 55 165 5 0 2 I 0 70 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128301 128590 126 - . gene_id 1 ; sequence CbirOr445 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128590 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128590 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128301 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128301 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128301 128590 126 - . alignment_id 1 ; Query CbirOr445 ; Align 128591 324 165 ; Align 128352 379 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr449PN Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 45 -> 126 Target range: 130406 -> 130166 46 : LeuPheIlePheThrLeuLeuProIleLeuProArgIlePheGlyIlePhePheProV : 65 |||.!! !|||..!!!!|||! !|||||||||!:!|||!!.||||||.!!! |||: LeuLeuGlyPheValPheLeuGlnIleLeuProGlnIleLeuGlyIleIleSerProL 130406 : CTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAATTTTAGGCATAATTTCACCTC : 130349 66 : alAsnLysSerGluThrTyrArgAsnIleTyrIleThrThrGluTyrPheValAspGl : 84 !!!.!:!!! !.!.||| !.!!!.:!! !:!! !|||||||||||||||||| ! euThrGluIleAsnThr---AsnLysLeuLeuValArgThrGluTyrPheValAspTy 130348 : TAACCGAGATCAATACT---AACAAATTACTCGTTCGAACCGAATACTTTGTCGACTA : 130295 85 : uGluLysTyrPheTyrPheIleMetLeuHisLeuTyrValAlaHisTyrIleAlaGly : 103 :!! ! |||.!!|||.!.|||! !:!!||| ! !:!!||| !::!! ! rLysAspTyrIleTyrLeuIleThrIleHisAlaThrIleAlaIleMetCysSerVal 130294 : CAAAGATTACATTTATCTAATCACGATCCACGCGACTATAGCAATAATGTGTAGTGTG : 130238 104 : GlyThrLeuIleGlyAlaGlyValLeuLeuThrGlyTyrPheThrTyrPheCysGlyL : 123 !! !! !|||.!!::!! !:::||| ... :::...! !:!!.!! !!|||: ThrMetGlnIleSerSerAspIleLeuAsnAsnIlePheMetMetHisIleSerGlyM 130237 : ACTATGCAAATTAGCAGCGATAttttgaataacatatttatGATGCACATCAGTGGAA : 130178 124 : euPheAsnIle : 126 !!|||.!.:!! etPheGluVal 130177 : TGTTCGAGGTA : 130167 vulgar: CbirOr449PN 45 126 . KQ414817.1 130406 130166 - 108 M 25 75 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130167 130406 108 - . gene_id 1 ; sequence CbirOr449PN ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130167 130406 . - . KQ414817.1 exonerate:protein2genome:local exon 130167 130406 . - . insertions 0 ; deletions 1 KQ414817.1 exonerate:protein2genome:local similarity 130167 130406 108 - . alignment_id 1 ; Query CbirOr449PN ; Align 130407 46 75 ; Align 130332 72 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr436 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 128 -> 215 Target range: 130424 -> 130166 129 : LeuTyrAlaPheCysAsnLeuIleIlePheIleLeuLeuProPheLeuProLysIleA : 148 :!!!:!:!!|||! |||:!! !|||:!!!!!|||! !.!!||||||:!!||| ValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuProGlnIleL 130424 : GTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAATTT : 130367 149 : laGlyIleIleLeuPheIleAsnGluSerGlnLeuHisHisThrValTyrIleMetTh : 167 !|||||||||! ! !:!!!.!|||! !.!. ! :!!! !:!! !:!! || euGlyIleIleSerProLeuThrGluIleAsnThr---AsnLysLeuLeuValArgTh 130366 : TAGGCATAATTTCACCTCTAACCGAGATCAATACT---AACAAATTACTCGTTCGAAC : 130313 168 : rGluTyrPheValAspArgGluLysTyrPheTyrLeuIleLeuLeuHisMetAspAla : 186 |||||||||||||||| !:!! ! |||.!!||||||||| !:!!||| ! ! ! rGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAlaThrIle 130312 : CGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCGACTATA : 130256 187 : AlaValCysIleGlyAlaIleAlaValIleGlyIleAlaThrMetPheValGlyTyrM : 206 |||:!! !.!!!.!! ! ! !|||.!!! !! !! ::: :::| AlaIleMetCysSerValThrMetGlnIleSerSerAspIleLeuAsnAsnIlePheM 130255 : GCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaataacatattta : 130196 207 : etLysHisAlaCysAlaMetPheLysIle : 215 ||! !||| ! !!!.!||||||:!!:!! etMetHisIleSerGlyMetPheGluVal 130195 : tGATGCACATCAGTGGAATGTTCGAGGTA : 130167 vulgar: CbirOr436 128 215 . KQ414817.1 130424 130166 - 111 M 31 93 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130167 130424 111 - . gene_id 1 ; sequence CbirOr436 ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130167 130424 . - . KQ414817.1 exonerate:protein2genome:local exon 130167 130424 . - . insertions 0 ; deletions 1 KQ414817.1 exonerate:protein2genome:local similarity 130167 130424 111 - . alignment_id 1 ; Query CbirOr436 ; Align 130425 129 93 ; Align 130332 161 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr436 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 332 -> 394 Target range: 128560 -> 128300 333 : AlaTyrAsnIleGlnTrpTyrAlaAlaSerIleArgIleGlnLysMetIleLeuPheL : 352 ::!||| ! !:!!|||||| !||| !!:::::: |||||||||:!!||||||| SerTyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheL 128560 : AGCTATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCC : 128503 353 : euLeuGlnArgGlyAlaLysAlaPheAsnLeuAsnLeuGlyGlyLeuPheIleGlySe : 371 ||:!!!!.||| ! !:!! !!! !!..|||!!.||| !..!||| !! !!.!.! euMetHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGl 128502 : TCATGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGG : 128446 372 : rLeuGluSerAlaGlyMet >>>> Target Intron 1 >>>> LeuIleSerT : 381 ! !|||! ! !!.!! 74 bp :!!:!:..!| yAsnGluLeuTyrAlaThr++ ++MetValGlnT 128445 : TAACGAGTTGTACGCTACCgt.........................agaTGGTGCAGA : 128342 382 : hrSerIleSerTyrPheThrValLeuTyrSerThrArgGln : 394 ||.!!.!!|||||||||||||||||||||||| !!:!:!! hrGlyPheSerTyrPheThrValLeuTyrSerLeuGlnGlu 128341 : CTGGTTTCTCCTACTTTACGGTTCTCTACTCGTTGCAAGAA : 128301 vulgar: CbirOr436 332 394 . KQ414817.1 128560 128300 - 104 M 45 135 5 0 2 I 0 70 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128301 128560 104 - . gene_id 2 ; sequence CbirOr436 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128560 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128560 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128301 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128301 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128301 128560 104 - . alignment_id 2 ; Query CbirOr436 ; Align 128561 333 135 ; Align 128352 378 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr428 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 334 -> 394 Target range: 128560 -> 128306 335 : AlaTyrAsnIleProTrpTyrLeuAlaProLeuGlnIleGlnLysLeuIleLeuPheL : 354 ::!||| ! ! !|||||| !||||||:::::: ||||||::::!!||||||| SerTyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheL 128560 : AGCTATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCC : 128503 355 : euLeuGlnArgSerSerLysAlaPheThrLeuAsnPheGlnGlyLeuPheIleAlaSe : 373 ||:!!!!.|||! !! !:!! !!! !! !|||!!..!.:!!..!||| !! !|||.! euMetHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGl 128502 : TCATGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGG : 128446 374 : rLeuGluCysPheAlaSer >>>> Target Intron 1 >>>> LeuAlaSerA : 383 ! !|||! !:!|||!!! 74 bp :!!!.!..!. yAsnGluLeuTyrAlaThr++ ++MetValGlnT 128445 : TAACGAGTTGTACGCTACCgt.........................agaTGGTGCAGA : 128342 384 : laSerValSerTyrPheThrIleMetTyrSerVal : 394 !!.!! !!||||||||||||:!!:!:||||||:!! hrGlyPheSerTyrPheThrValLeuTyrSerLeu 128341 : CTGGTTTCTCCTACTTTACGGTTCTCTACTCGTTG : 128307 vulgar: CbirOr428 334 394 . KQ414817.1 128560 128306 - 105 M 45 135 5 0 2 I 0 70 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128307 128560 105 - . gene_id 1 ; sequence CbirOr428 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128560 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128560 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128307 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128307 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128307 128560 105 - . alignment_id 1 ; Query CbirOr428 ; Align 128561 335 135 ; Align 128352 380 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr433 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 126 -> 215 Target range: 130430 -> 130166 127 : IleIleLeuTyrThrValCysAsnLeuLeuIlePheIleLeuLeuProValLeuProT : 146 ||| !:!!!:!:!! !!! |||||| !|||:!!!!!|||! !:!!|||||| IleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuProG 130430 : ATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGC : 130373 147 : hrAlaAlaGlyIleIleLeuPheIleAsnGluSerGlnLeuHisHisThrValTyrIl : 165 ! ! !|||||||||! ! !:!!!.!|||! !.!. ! :!!! !:!! !:! lnIleLeuGlyIleIleSerProLeuThrGluIleAsnThr---AsnLysLeuLeuVa 130372 : AAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATACT---AACAAATTACTCGT : 130319 166 : eMetThrGluTyrPheValAspArgGluLysTyrPheTyrLeuIleLeuLeuHisMet : 184 ! |||||||||||||||||| !:!! ! |||.!!||||||||| !:!!||| ! lArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAla 130318 : TCGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCG : 130262 185 : AspValAlaValCysIleGlyAlaIleAlaValIleSerThrAlaThrMetLeuIleG : 204 !:!!|||:!! !.!!!.!! ! ! !||||||!:!! !! ::: ThrIleAlaIleMetCysSerValThrMetGlnIleSerSerAspIleLeuAsnAsnI 130261 : ACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaataaca : 130202 205 : lyTyrCysLysTyrIleCysAlaMetPheLysIle : 215 ::: ! !:!!||| !!!.!||||||:!!:!! lePheMetMetHisIleSerGlyMetPheGluVal 130201 : tatttatGATGCACATCAGTGGAATGTTCGAGGTA : 130167 vulgar: CbirOr433 126 215 . KQ414817.1 130430 130166 - 107 M 33 99 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130167 130430 107 - . gene_id 1 ; sequence CbirOr433 ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130167 130430 . - . KQ414817.1 exonerate:protein2genome:local exon 130167 130430 . - . insertions 0 ; deletions 1 KQ414817.1 exonerate:protein2genome:local similarity 130167 130430 107 - . alignment_id 1 ; Query CbirOr433 ; Align 130431 127 99 ; Align 130332 161 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr446 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 332 -> 394 Target range: 128560 -> 128300 333 : AlaTyrSerValHisTrpTyrAlaAlaProIleArgIleGlnLysLeuIleLeuPheL : 352 ::!|||!!!!.! ! |||||| !||||||:::::: ||||||::::!!||||||| SerTyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheL 128560 : AGCTATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCC : 128503 353 : euLeuGlnArgSerCysLysThrHisGlyIleLysLeuGlyGlyIlePheIleAlaSe : 371 ||:!!!!.|||! ! :!! !! ! !!:!!|||||| !..!:!! !! !|||.! euMetHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGl 128502 : TCATGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGG : 128446 372 : rLeuGluGlyPheAlaAla >>>> Target Intron 1 >>>> LeuSerAlaT : 381 ! !||| !!:!|||.!! 74 bp :!! ! !| yAsnGluLeuTyrAlaThr++ ++MetValGlnT 128445 : TAACGAGTTGTACGCTACCgt.........................agaTGGTGCAGA : 128342 382 : hrSerLeuSerTyrPheThrValLeuTyrSerLeuGlnLys : 394 ||.!!!!!||||||||||||||||||||||||||||||:!! hrGlyPheSerTyrPheThrValLeuTyrSerLeuGlnGlu 128341 : CTGGTTTCTCCTACTTTACGGTTCTCTACTCGTTGCAAGAA : 128301 vulgar: CbirOr446 332 394 . KQ414817.1 128560 128300 - 123 M 45 135 5 0 2 I 0 70 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128301 128560 123 - . gene_id 1 ; sequence CbirOr446 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128560 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128560 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128301 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128301 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128301 128560 123 - . alignment_id 1 ; Query CbirOr446 ; Align 128561 333 135 ; Align 128352 378 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr432PSE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 132 -> 214 Target range: 32500 -> 32743 133 : GlyThrPheSerThrAlaIleIleValTyrAlaProTyrIleLeuAspValValMetPro : 152 |||! !|||||| !||||||:!: !!:! !|||||||||:!!||||||:!! !||| GlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaPro 32501 : GGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCT : 32558 153 : LysAsnGluSerTyrAlaIleProIleMetGluIleValThrLysTyrPheIleValSer : 172 !||||||||| ! !! !:!!:!! ! !!.! !:!!||||||:!!! !... LeuAsnGluSer---ArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGln 32559 : CTAAACGAATCC---CGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcag : 32615 173 : GluLysTyrTyrPheLeuIleLeuValHisMetAsnIleThrCysSerAlaGluLeuIle : 192 :::||||||:::... !||| !:!!|||||| ! ||| !!!! !! |||! GlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThr 32616 : caaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACG : 32675 193 : ValMetIleGlyThrGlyThrMetIleValSerTyrPheLysHisAlaCysGlyIlePhe : 212 ||| ! !.!... ::::::...::: :::... |||!.!|||!.!! !||| ValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPhe 32676 : GTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTC : 32735 213 : GluIle : 214 .!.||| AsnIle 32736 : AATATT : 32743 vulgar: CbirOr432PSE 132 214 . KQ415081.1 32500 32743 + 124 M 24 72 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32501 32743 124 + . gene_id 1 ; sequence CbirOr432PSE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32501 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32501 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32501 32743 124 + . alignment_id 1 ; Query CbirOr432PSE ; Align 32501 133 72 ; Align 32573 158 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr446 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 327 -> 393 Target range: 38478 -> 38748 328 : AsnIlePheSerAlaAlaTyrSerValHisTrpTyrAlaAlaProIleArgIleGlnLys : 347 :!!|||!!.! !!.! !!:!! ! !!..||||||! !||||||:!!!:!||||||||| AspIleLeuPheValArgPheTyrSerArgTrpTyrAspAlaProLeuLysIleGlnLys 38479 : GATATATTGTTCGTCAGGTTTTATTCACGATGGTACGACGCGCCTCTAAAAATACAGAAA : 38536 348 : LeuIleLeuPheLeuLeuGlnArgSerCysLysThrHisGlyIleLysLeuGlyGlyIle : 367 |||:!!|||.!!:!!:!!.!.||||||! !:!! !! |||:!!::::!!|||! ! ! LeuValLeuIleIleMetAsnArgSerPheGluProValGlyLeuArgIleGlyAspTyr 38537 : CTAGTACTGATCATAATGAACAGAAGCTTCGAACCAGTAGGCCTCCGTATTGGCGATTAC : 38596 368 : PheIleAlaSerLeuGluGlyPheAlaAla >>>> Target Intron 1 >>>> L : 378 ...::::::|||...|||:::::! 72 bp : GlnAspValThrIleGluAsnPheSerSer++ ++I 38597 : CAGGAcgtaacaattgaaaatttctcatcCgt.........................agA : 38701 379 : euSerAlaThrSerLeuSerTyrPheThrValLeuTyrSerLeuGln : 393 !!! ! !..!|||!!!|||! |||! !|||||||||||||||||| leIleGlnValSerPheSerSerPheMetValLeuTyrSerLeuGln 38702 : TAATTCAAGTGAGCTTCTCGTCGTTCATGGTACTCTACTCTCTACAA : 38748 vulgar: CbirOr446 327 393 . KQ415081.1 38478 38748 + 107 M 50 150 5 0 2 I 0 68 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 38479 38748 107 + . gene_id 1 ; sequence CbirOr446 ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 38479 38628 . + . KQ415081.1 exonerate:protein2genome:local exon 38479 38628 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 38629 38630 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 38629 38700 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 38699 38700 . + . intron_id 0 ; splice_site "AG" KQ415081.1 exonerate:protein2genome:local cds 38701 38748 . + . KQ415081.1 exonerate:protein2genome:local exon 38701 38748 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 38479 38748 107 + . alignment_id 1 ; Query CbirOr446 ; Align 38479 328 150 ; Align 38701 378 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr446 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 327 -> 394 Target range: 13644 -> 13915 328 : AsnIlePheSerAlaAlaTyrSerValHisTrpTyrAlaAlaProIleArgIleGlnLys : 347 ::!:!! ! !!! !::!!:!|||! ! ! ||||||.!!||||||:!!!:! !|||||| SerLeuValThrArgSerPheSerGlyLysTrpTyrThrAlaProValLysSerGlnLys 13645 : TCTCTTGTAACACGTAGCTTTTCTGGGAAATGGTACACAGCGCCGGTAAAATCCCAGAAA : 13702 348 : LeuIleLeuPheLeuLeuGlnArgSerCysLysThrHisGlyIleLysLeuGlyGlyIle : 367 !:!!|||||||||:!!|||!:!! ! ||| !! ! !|||:!!:!! !..!! ThrValLeuPheLeuMetGlnLysPheIleLysProCysLysIleGluValIleSerThr 13703 : ACGGTTCTGTTCCTCATGCAGAAATTCATAAAACCGTGCAAGATAGAAGTTATATCCACG : 13762 368 : PheIleAlaSerLeuGluGlyPheAlaAla >>>> Target Intron 1 >>>> L : 378 ! !|||.!! !||| !!:!|||::! 70 bp : ValAlaAlaGlySerGluThrTyrAlaSer++ ++I 13763 : GTGGCCGCAGGTAGCGAGACGTACGCGAGCgt.........................agA : 13865 379 : euSerAlaThrSerLeuSerTyrPheThrValLeuTyrSerLeuGlnLys : 394 !! ! !! !.!!!!!|||||||||! !||||||||||||||||||:!! leValGlnIleGlyPheSerTyrPheMetValLeuTyrSerLeuGlnGlu 13866 : TTGTGCAGATCGGTTTCTCCTACTTCATGGTTCTCTACTCGTTGCAAGAA : 13915 vulgar: CbirOr446 327 394 . KQ415081.1 13644 13915 + 104 M 50 150 5 0 2 I 0 66 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 13645 13915 104 + . gene_id 2 ; sequence CbirOr446 ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 13645 13794 . + . KQ415081.1 exonerate:protein2genome:local exon 13645 13794 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 13795 13796 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 13795 13864 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 13863 13864 . + . intron_id 0 ; splice_site "aG" KQ415081.1 exonerate:protein2genome:local cds 13865 13915 . + . KQ415081.1 exonerate:protein2genome:local exon 13865 13915 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 13645 13915 104 + . alignment_id 2 ; Query CbirOr446 ; Align 13645 328 150 ; Align 13865 378 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr430PSE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 293 -> 379 Target range: 36492 -> 38631 294 : GluGluValGluGluValIleLeuHisPhePheAlaValIleGlyIleValLeuPheLeu : 313 ..!:!!:!!||||||:!!|||||| ! ! !|||:!!||| !:!!|||.!.:!! SerLysLeuGluGluIleIleLeuGlyGlyValHisValValGlyTyrLeuLeuLeuIle 36493 : TCGAAACTTGAAGAAATAATACTCGGCGGGGTGCACGTGGTTGGTTACCTGCTTCTGATA : 36550 314 : PheValThrAsnTyrSerGlyGlnGluIleIleAspHisSerAsnAsnValTyrValThr : 333 |||:!!!.!!.!!:! !! !|||:!!:!::!:|||:!!|||::::!!:!!! ! ! PheMetAsnThrPheProMetGlnLysLeuLeuAspAsnSerSerAspIleLeuTyrArg 36551 : TTTATGAACACCTTTCCGATGCAGAAATTGTTGGATAACAGCTCGGATATCTTGTATCGA : 36610 334 : {Th} >>>> Target Intron 1 >>>> {r}TyrThrValSerUnkTyrLeuAla : 342 {! } 1881 bp {!}!:! ! ! !! ||| !||| {Me}++ ++{t}PheTyrSerArgTrpTyrAspAla 36611 : {AT}gt.........................ag{G}TTTTATTCACGATGGTACGACGCG : 38518 343 : ProIleArgIleGlnLysLeuValLeuPheLeuLeuLeuArgSerSerArgIleLeuThr : 362 |||:!!!:!||||||||||||||||||.!!:!!:!! !||||||! !..! !:!! ! ProLeuLysIleGlnLysLeuValLeuIleIleMetAsnArgSerPheGluProValGly 38519 : CCTCTAAAAATACAGAAACTAGTACTGATCATAATGAACAGAAGCTTCGAACCAGTAGGC : 38578 363 : LeuAsnValGlyGlyLeuTyrValAlaSerLeuGluGlyPheAlaThrLeu : 379 |||..!:!!|||! !! ! ! ! ...::::::|||...|||:::::!:!! LeuArgIleGlyAspTyrGlnAspValThrIleGluAsnPheSerSerVal 38579 : CTCCGTATTGGCGATTACCAGGAcgtaacaattgaaaatttctcatcCGTA : 38631 vulgar: CbirOr430PSE 293 379 . KQ415081.1 36492 38631 + 113 M 40 120 S 0 2 5 0 2 I 0 1877 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 36493 38631 113 + . gene_id 1 ; sequence CbirOr430PSE ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 36493 36614 . + . KQ415081.1 exonerate:protein2genome:local exon 36493 36614 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 36615 36616 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 36615 38495 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 38494 38495 . + . intron_id 0 ; splice_site "AG" KQ415081.1 exonerate:protein2genome:local cds 38496 38631 . + . KQ415081.1 exonerate:protein2genome:local exon 38496 38631 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 36493 38631 113 + . alignment_id 1 ; Query CbirOr430PSE ; Align 36493 294 120 ; Align 38497 335 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr430PSE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 128 -> 214 Target range: 32488 -> 32743 129 : PheAlaValCysSerLeuPhePheAlaGlyThrMetLeuPheSerProTyrIleLeuAsp : 148 |||!.! ! !.!!:!!|||! ! !!.!! !:!!! !||| !|||||||||:!!||| PheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAsp 32489 : TTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGAC : 32546 149 : IleValMetProLysAsnGluSerTyrAlaIleHisIleMetLysLeuIleThrLysTyr : 168 :!::!! !||| !||||||||| ! !|||:!!:!! !! ! ! !:!!||| ValIleAlaProLeuAsnGluSer---ArgHisHisValLeuProTyrAlaGlyGluTyr 32547 : GTGATAGCGCCTCTAAACGAATCC---CGACACCATGTACTGCCGTACGCCGGCGAATAT : 32603 169 : PheArgValSerGluLysTyrTyrPheLeuSerPheIleTyrLeuAsnAlaAlaCysSer : 188 ||| !! !...:::||||||:::... !! ! :!::!!:!! !!.!.!! !!!! PheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThr 32604 : TTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACC : 32663 189 : AlaGlyValIleValValIleGlyThrGlyThrMetIleLeuSerTyrPheLysHisAla : 208 !|||:!!! |||!.!! !.!... ::::::...::: :::... |||!.! LeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisVal 32664 : CTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTT : 32723 209 : CysGlyLeuPheGluIle : 214 |||!.! !|||.!.||| CysAlaLysPheAsnIle 32724 : TGCGCCAAATTCAATATT : 32743 vulgar: CbirOr430PSE 128 214 . KQ415081.1 32488 32743 + 102 M 28 84 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32489 32743 102 + . gene_id 2 ; sequence CbirOr430PSE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32489 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32489 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32489 32743 102 + . alignment_id 2 ; Query CbirOr430PSE ; Align 32489 129 84 ; Align 32573 158 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr431INT Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 132 -> 214 Target range: 32500 -> 32743 133 : GlyValPheThrAsnCysValMetIleTyrSerProTyrIleLeuAspValValMetPro : 152 |||:!!|||:!! !!...:!!:!! !!:! !|||||||||:!!||||||:!! !||| GlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaPro 32501 : GGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCT : 32558 153 : LysAsnGluSerTyrThrIleHisMetMetGluMetValThrLysTyrPheIleValSer : 172 !||||||||| ! !|||:!::!! ! !.! !:!!||||||:!!! !... LeuAsnGluSer---ArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGln 32559 : CTAAACGAATCC---CGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcag : 32615 173 : GluLysTyrTyrPheLeuPheLeuValHisLeuAsnValThrCysSerAlaGluLeuIle : 192 :::||||||:::... !.!! !:!!|||:!! !! !||| !!!! !! |||! GlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThr 32616 : caaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACG : 32675 193 : ValLeuIleAlaThrAlaThrMetLeuMetSerValPheLysHisIleCysGlyMetPhe : 212 ||| !! |||... ::::::...::: ... |||:!!|||!.!! ||| ValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPhe 32676 : GTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTC : 32735 213 : GluIle : 214 .!.||| AsnIle 32736 : AATATT : 32743 vulgar: CbirOr431INT 132 214 . KQ415081.1 32500 32743 + 120 M 24 72 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32501 32743 120 + . gene_id 1 ; sequence CbirOr431INT ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32501 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32501 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32501 32743 120 + . alignment_id 1 ; Query CbirOr431INT ; Align 32501 133 72 ; Align 32573 158 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr429PSE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 123 -> 214 Target range: 32473 -> 32743 124 : IleIleLeuThrValLeuIleMetGlyAlaValPheGlyAsnPheIleIleLeuTyrLeu : 143 :::||| !|||! !!!!:!! !!.!:!!|||..! !! |||:!:! !!:!||| LeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeu 32474 : ctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTG : 32531 144 : ProTyrIleLeuAspIleValMetSerLysAsnGluSerTyrAlaIleHisIleMetGlu : 163 |||||||||:!!|||:!::!! ! !! !||||||||| ! !|||:!!:!! ! ProTyrIleIleAspValIleAlaProLeuAsnGluSer---ArgHisHisValLeuPro 32532 : CCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCC---CGACACCATGTACTGCCG : 32588 164 : MetValThrLysTyrPheIleValSerGluLysTyrTyrPheLeuIleLeuValHisLeu : 183 !.! !:!!||||||:!!! !...:::||||||:::... !||| !:!!|||:!! TyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMet 32589 : TACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATG : 32648 184 : AsnAlaThrCysSerAlaGluLeuIleValPheThrAlaThrAlaThrThrLeuMetSer : 203 !!.!||| !!!! !! |||! ||| !||||||... ::: ...::: LeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhe 32649 : CTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattc : 32708 204 : IlePheLysHisIleCysGlyMetPheGluIle : 214 ...... |||:!!|||!.!! |||.!.||| PheMetPheHisValCysAlaLysPheAsnIle 32709 : ttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr429PSE 123 214 . KQ415081.1 32473 32743 + 130 M 33 99 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32474 32743 130 + . gene_id 1 ; sequence CbirOr429PSE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32474 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32474 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32474 32743 130 + . alignment_id 1 ; Query CbirOr429PSE ; Align 32474 124 99 ; Align 32573 158 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr436 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 129 -> 215 Target range: 32488 -> 32743 130 : TyrAlaPheCysAsnLeuIleIlePheIleLeuLeuProPheLeuProLysIleAlaGly : 149 !:!!.!!:! !...:!!.!! !!:! !:!!:!!! !||||||||| ! ||| !! ! PheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAsp 32489 : TTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGAC : 32546 150 : IleIleLeuPheIleAsnGluSerGlnLeuHisHisThrValTyrIleMetThrGluTyr : 169 :!:||| ! !:!!|||||||||!:! ||||||..!:!! ! !|||||| ValIleAlaProLeuAsnGluSerArg---HisHisValLeuProTyrAlaGlyGluTyr 32547 : GTGATAGCGCCTCTAAACGAATCCCGA---CACCATGTACTGCCGTACGCCGGCGAATAT : 32603 170 : PheValAspArgGluLysTyrPheTyrLeuIleLeuLeuHisMetAspAlaAlaValCys : 189 |||||||||::::::||||||||| !||| !||||||||| !!.!.!!||| ! PheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThr 32604 : TTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACC : 32663 190 : IleGlyAlaIleAlaValIleGlyIleAlaThrMetPheValGlyTyrMetLysHisAla : 209 :!!||| !! !.!!.!! !.!::: ::::::|||::: :::||| |||!.! LeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisVal 32664 : CTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTT : 32723 210 : CysAlaMetPheLysIle : 215 ||||||! |||!!.||| CysAlaLysPheAsnIle 32724 : TGCGCCAAATTCAATATT : 32743 vulgar: CbirOr436 129 215 . KQ415081.1 32488 32743 + 151 M 29 87 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32489 32743 151 + . gene_id 1 ; sequence CbirOr436 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32489 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32489 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32489 32743 151 + . alignment_id 1 ; Query CbirOr436 ; Align 32489 130 87 ; Align 32576 160 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr436 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 132 -> 215 Target range: 22050 -> 22296 133 : CysAsnLeuIleIlePheIleLeuLeuProPheLeuProLysIleAlaGlyIleIleLeu : 152 |||..!:!! !:!!|||:!! ! ! !!.!!||||||! :!! ! !!! !|||! ! CysGlyIleGlyLeuPheValThrAlaThrLeuLeuProIleValMetCysArgIleGln 22051 : TGTGGCATAGGACTTTTCGTTACAGCGACGCTTCTACCAATCGTAATGTGTAGAATACAG : 22108 153 : PheIleAsnGluSerGlnLeuHisHisThrValTyrIleMetThrGluTyrPheValAsp : 172 !|||||||||!!.:!! ||||||:!! .!!... ||||||||| ||| ProArgAsnGluSerHisVal---HisThrIleProPheGlnGlyGluTyrPhePheAsp 22109 : CCACGTAACGAATCTCACGTA---CACACTATTCCGTTTCAaggggaatattttttcgac : 22165 173 : ArgGluLysTyrPheTyrLeuIleLeuLeuHisMetAspAlaAlaValCysIleGlyAla : 192 ::!|||||| !!.!. !!!|||:!!||||||||| !.!!||| ||| ! ! GlnGluLysAsnMetValPheIleIleLeuHisMetIleLeuThrValThrIleThrHis 22166 : cAAGAGAAAAATATGGTGTTCATTATACTGCACATGATACTCACAGTTACAATCACACAT : 22225 193 : IleAlaValIleGlyIleAlaThrMetPheValGlyTyrMetLysHisAlaCysAlaMet : 212 ! !!.!:!! !! !! !! !!!:!!.:!!! !! ! ! !||||||||||||:!! CysIleAlaValMetThrAspMetIleLeuLeuValLeuThrMetHisAlaCysAlaLeu 22226 : TGCATTGCTGTAATGACTGATATGATTTTGCTAGTTTTAACCATGCATGCCTGTGCCTTG : 22285 213 : PheLysIle : 215 ||| :!! PheAlaVal 22286 : TTCGCTGTT : 22296 vulgar: CbirOr436 132 215 . KQ415081.1 22050 22296 + 101 M 27 81 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 22051 22296 101 + . gene_id 2 ; sequence CbirOr436 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 22051 22296 . + . KQ415081.1 exonerate:protein2genome:local exon 22051 22296 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 22051 22296 101 + . alignment_id 2 ; Query CbirOr436 ; Align 22051 133 81 ; Align 22132 161 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr445 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 328 -> 380 Target range: 38478 -> 38634 329 : AspMetPheSerTyrAlaTyrAsnValArgTrpTyrThrAlaProIleHisIleGlnLys : 348 |||!!:!!.! ! ! !!:! !! !||||||||| !||||||:!! ! ||||||||| AspIleLeuPheValArgPheTyrSerArgTrpTyrAspAlaProLeuLysIleGlnLys 38479 : GATATATTGTTCGTCAGGTTTTATTCACGATGGTACGACGCGCCTCTAAAAATACAGAAA : 38536 349 : LeuIleLeuPheLeuLeuGlnArgSerCysLysProTyrGlyLeuLysLeuGlyGlyIle : 368 |||:!!|||.!!:!!:!!.!.||||||! !:!!||| ||||||::::!!|||! ! ! LeuValLeuIleIleMetAsnArgSerPheGluProValGlyLeuArgIleGlyAspTyr 38537 : CTAGTACTGATCATAATGAACAGAAGCTTCGAACCAGTAGGCCTCCGTATTGGCGATTAC : 38596 369 : PheIleAlaSerLeuLysGlyPheAlaSerLeuSer : 380 ...:::::::::...|||:::|||:!!||| GlnAspValThrIleGluAsnPheSerSerValSer 38597 : CAGGAcgtaacaattgaaaatttctcatcCGTAAGT : 38634 vulgar: CbirOr445 328 380 . KQ415081.1 38478 38634 + 111 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 38479 38634 111 + . gene_id 1 ; sequence CbirOr445 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 38479 38634 . + . KQ415081.1 exonerate:protein2genome:local exon 38479 38634 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 38479 38634 111 + . alignment_id 1 ; Query CbirOr445 ; Align 38479 329 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr448PSE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 319 -> 389 Target range: 38472 -> 38751 320 : HisTyrAsnPheIlePheLeuSerAlaTyrAsnValArgTrpTyrIleAlaProLeuArg : 339 ||| !:!!.!.:!:|||:!!!!! !|||::: ||||||||| !|||||||||!:! HisValAspIleLeuPheValArgPheTyrSer---ArgTrpTyrAspAlaProLeuLys 38473 : CACGTCGATATATTGTTCGTCAGGTTTTATTCA---CGATGGTACGACGCGCCTCTAAAA : 38527 340 : ValGlnArgLeuIleValPheLeuLeuGlnLysGlyThrLysProTyrSerMetLysVal : 359 :!!|||!:!|||:!!:!!.!!:!!:!!.!.!:!.!! !:!!||| .!!:!:::::!! IleGlnLysLeuValLeuIleIleMetAsnArgSerPheGluProValGlyLeuArgIle 38528 : ATACAGAAACTAGTACTGATCATAATGAACAGAAGCTTCGAACCAGTAGGCCTCCGTATT : 38587 360 : GlyGlyLeuTyrThrIleSerLeuGluAsnPheAlaSer >>>> Target Intron : 373 |||! !! ! ! :::::::::|||||||||:::||| 72 bp GlyAspTyrGlnAspValThrIleGluAsnPheSerSer++ 38588 : GGCGATTACCAGGAcgtaacaattgaaaatttctcatcCgt................... : 38631 374 : 1 >>>> LeuSerThrAlaAlaIleSerTyrPheThrValLeuTyrSerLeuGlnAsn : 389 :!!! ! !!.!::!.!!|||! |||! !||||||||||||||||||::! ++IleIleGlnValSerPheSerSerPheMetValLeuTyrSerLeuGlnSer 38632 : ......agATAATTCAAGTGAGCTTCTCGTCGTTCATGGTACTCTACTCTCTACAATCT : 38751 vulgar: CbirOr448PSE 319 389 . KQ415081.1 38472 38751 + 121 M 11 33 G 1 0 M 41 123 5 0 2 I 0 68 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 38473 38751 121 + . gene_id 1 ; sequence CbirOr448PSE ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 38473 38628 . + . KQ415081.1 exonerate:protein2genome:local exon 38473 38628 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local splice5 38629 38630 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 38629 38700 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 38699 38700 . + . intron_id 0 ; splice_site "AG" KQ415081.1 exonerate:protein2genome:local cds 38701 38751 . + . KQ415081.1 exonerate:protein2genome:local exon 38701 38751 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 38473 38751 121 + . alignment_id 1 ; Query CbirOr448PSE ; Align 38473 320 33 ; Align 38506 332 123 ; Align 38701 373 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr433 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 129 -> 215 Target range: 32488 -> 32743 130 : TyrThrValCysAsnLeuLeuIlePheIleLeuLeuProValLeuProThrAlaAlaGly : 149 !:!..! ! !...:!!!!! !!:! !:!!:!!! ! !!|||||| ! ! !! ! PheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAsp 32489 : TTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGAC : 32546 150 : IleIleLeuPheIleAsnGluSerGlnLeuHisHisThrValTyrIleMetThrGluTyr : 169 :!:||| ! !:!!|||||||||!:! ||||||..!:!! ! !|||||| ValIleAlaProLeuAsnGluSerArg---HisHisValLeuProTyrAlaGlyGluTyr 32547 : GTGATAGCGCCTCTAAACGAATCCCGA---CACCATGTACTGCCGTACGCCGGCGAATAT : 32603 170 : PheValAspArgGluLysTyrPheTyrLeuIleLeuLeuHisMetAspValAlaValCys : 189 |||||||||::::::||||||||| !||| !||||||||| !! !.!!||| ! PheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThr 32604 : TTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACC : 32663 190 : IleGlyAlaIleAlaValIleSerThrAlaThrMetLeuIleGlyTyrCysLysTyrIle : 209 :!!||| !! !.!!.!! :!!... ::::::...||| ::: :!!:!! LeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisVal 32664 : CTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTT : 32723 210 : CysAlaMetPheLysIle : 215 ||||||! |||!!.||| CysAlaLysPheAsnIle 32724 : TGCGCCAAATTCAATATT : 32743 vulgar: CbirOr433 129 215 . KQ415081.1 32488 32743 + 116 M 29 87 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32489 32743 116 + . gene_id 1 ; sequence CbirOr433 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32489 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32489 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32489 32743 116 + . alignment_id 1 ; Query CbirOr433 ; Align 32489 130 87 ; Align 32576 160 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr439 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 87 -> 211 Target range: 31861 -> 32743 88 : ArgLeuLeuGluAsnLeuGlnTyrIleCysSerGluLeuLysAspGluAsnGluIleAla : 107 !:!|||||||||||||||::!:!! !!! !!!! !|||!!.:!!! ||||||! ! ! LysLeuLeuGluAsnLeuArgHisAspTrpThrValLeuAsnAsnAlaAsnGluThrLys 31862 : AAACTGTTGGAGAACCTCAGGCACGATTGGACCGTGCTCAACAACGCTAACGAGACAAAG : 31919 108 : IleIleLysArgTyrGluHisIleAlaLysHisIleAlaIleGlyLeuIle{L} >>>> : 125 :!!:!!|||! !:!!! !:!:!.! ! ! :!: !:!! !! !|||{ } ValLeuLysMetHisAlaAlaValGlyGlyLysLeuMetLeuPheTyrIle{G}++ 31920 : GTTTTAAAGATGCACGCCGCTGTGGGCGGAAAATTGATGCTTTTTTATATC{G}gt.... : 31976 126 : Target Intron 1 >>>> {eu}LeuLeuMetCysValLeuPheIlePheThrLeu : 136 513 bp { !}!!!:!! !! !:!!||| !!:!.!!:!! ++{ly}PheValTyrIleGlyIlePheSerTyrAlaIle 31977 : .....................ag{GA}TTCGTATACATTGGAATATTTTCCTACGCAATA : 32519 137 : LeuProPheValProArgIlePheGlyIlePhePheLeuValAsnLysSerGluProHis : 156 :!!! !|||:!!||| !|||.!!! !:!:.!. ! !:!!|||:!!|||..!! !||| ValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHis 32520 : GTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCAT : 32579 157 : ArgAsnMetTyrMetArgThrGluTyrPheValAspGlnGluLysTyrPheTyrSerIle : 176 ! !||| ! !||||||||||||||||||:::||||||||| !||| ValLeuProTyr---AlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIle 32580 : GTACTGCCGTAC---GCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATC : 32636 177 : LeuLeuHisLeuTyrAlaAlaLeuTyrIleValGlyGlyIleLeuIleGlyThrGlyIle : 196 !||||||:!! !!.!.!!:!! !:!!! ! ! !:!! !! !.!... AlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSer 32637 : GCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattca : 32696 197 : LeuMetThrGlyTyrSerSerTyrPheCysGlyLeuPheAsnIle : 211 :::... ::: !! !:!! !!|||!.! !||||||||| IlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32697 : attttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr439 87 211 . KQ415081.1 31861 32743 + 127 M 37 111 S 0 1 5 0 2 I 0 509 3 0 2 S 1 2 M 35 105 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 31862 32743 127 + . gene_id 1 ; sequence CbirOr439 ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 31862 31973 . + . KQ415081.1 exonerate:protein2genome:local exon 31862 31973 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 31974 31975 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 31974 32486 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 32485 32486 . + . intron_id 0 ; splice_site "AG" KQ415081.1 exonerate:protein2genome:local cds 32487 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32487 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 31862 32743 127 + . alignment_id 1 ; Query CbirOr439 ; Align 31862 88 111 ; Align 32489 126 105 ; Align 32594 162 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr440 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 143 -> 211 Target range: 32539 -> 32743 144 : IleIleAspIlePheLeuIleLeuAsnAsnSerGlnHisGlyMetIleGlnLeuThrThr : 163 |||||||||:!:.!. ! !||||||.!.|||!:!||| !:!::!:! !! !.!! ! IleIleAspValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGly 32540 : ATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGC : 32597 164 : GluTyrPheIleAspGlnGluLysTyrPheTyrLeuIleLeuLeuHisIleAspAlaAla : 183 |||||||||:!!||||||:::||||||||| !||| !||||||!!: !!.!.!! GluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThr 32598 : GAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACC : 32657 184 : ThrCysIleAlaGlySerGlyLeuThrAlaIleGlyLeuIleTyrCysAlaTyrPheLys : 203 ..! !:!!!.! !!!!! ! !||||||::: |||::: :::... ValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPhe 32658 : GTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTC : 32717 204 : HisIleCysGlyMetPheArgIle : 211 |||:!!|||!.!! |||!.!||| HisValCysAlaLysPheAsnIle 32718 : CACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr440 143 211 . KQ415081.1 32539 32743 + 129 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32540 32743 129 + . gene_id 1 ; sequence CbirOr440 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32540 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32540 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32540 32743 129 + . alignment_id 1 ; Query CbirOr440 ; Align 32540 144 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr426PI Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 120 -> 215 Target range: 32461 -> 32743 121 : LysHisPheTyrLeuLysIleSerLeuTyrGlyMetPheAsnIleIleThrThrCysLeu : 140 ::: |||:::||| ! !!!! !!:!! ! .!!...|||.!!:!! !...:!! ArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIle 32462 : cgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATA : 32519 141 : LeuProValPheProArgIleLeuArgThrPheThrSerThrAsnValSerGluGluHis : 160 :!!! ! !!.!.||| !|||:!! !..!.!..!! !! !|||! !|||..!.!.||| ValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHis 32520 : GTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCAT : 32579 161 : PheMetIleHisIleProArgGluTyrPheIleAspGlnGlyLysTyrTyrTyrCysIle : 180 :!::!:! ! !! !!|||||||||:!!|||||| ||||||::: ||| ---ValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIle 32580 : ---GTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATC : 32636 181 : LeuLeuHisMetAspValSerLeuPheMetGlyAlaThrValLeuValAlaThrGlyThr : 200 !||||||||| !! !!!!:!! !:!:||| !|||||| !..!|||... ::: AlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSer 32637 : GCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattca : 32696 201 : LeuLeuPheGlyCysMetLysTyrMetCysGlyLeuPheArgIle : 215 :::...... ||| :!!:!:|||!.! !|||!.!||| IlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32697 : attttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr426PI 120 215 . KQ415081.1 32461 32743 + 104 M 40 120 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32462 32743 104 + . gene_id 1 ; sequence CbirOr426PI ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32462 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32462 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32462 32743 104 + . alignment_id 1 ; Query CbirOr426PI ; Align 32462 121 120 ; Align 32582 162 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr438 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 168 -> 216 Target range: 11588 -> 11732 169 : TyrPheValAspGlnAspLysTyrTyrTyrTyrIleLeuLeuHisMetAspValSerTyr : 188 ||||||||||||:!!! :!!|||||||||||||||:!!|||||| !!!! ! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrVal 11589 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTT : 11646 189 : IleIleGlyIleIleValIleProAlaThrGlySerLeuLeuPheGlyGlyMetLysTyr : 208 :!:|||! !:!::!:||| ! !||| !! !!!! !! !.!.! ! !:!!:!!:!! LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 11647 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 11706 209 : IleCysGlyLeuPheLysIleAla : 216 ! !|||||||||||| :!:||| ThrCysGlyLeuPheAlaValAla 11707 : ACTTGCGGACTGTTCGCCGTGGCC : 11732 vulgar: CbirOr438 168 216 . LHQN01025741.1 11588 11732 + 100 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11589 11732 100 + . gene_id 1 ; sequence CbirOr438 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11589 11732 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11589 11732 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11589 11732 100 + . alignment_id 1 ; Query CbirOr438 ; Align 11589 169 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr438 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 168 -> 216 Target range: 1134 -> 990 169 : TyrPheValAspGlnAspLysTyrTyrTyrTyrIleLeuLeuHisMetAspValSerTyrIl : 189 ||||||||||||:!!! :!!|||||||||||||||:!!|||||| !!!! !:! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLe 1134 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTT : 1074 190 : eIleGlyIleIleValIleProAlaThrGlySerLeuLeuPheGlyGlyMetLysTyrIleC : 210 :|||! !:!::!:||| ! !||| !! !!!! !! !.!.! ! !:!!:!!:!!! !| uIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrC 1073 : GATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTT : 1011 211 : ysGlyLeuPheLysIleAla : 216 ||||||||||| :!:||| ysGlyLeuPheAlaValAla 1010 : GCGGACTGTTCGCCGTGGCC : 991 vulgar: CbirOr438 168 216 . LHQN01027734.1 1134 990 - 100 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 991 1134 100 - . gene_id 1 ; sequence CbirOr438 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 991 1134 . - . LHQN01027734.1 exonerate:protein2genome:local exon 991 1134 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 991 1134 100 - . alignment_id 1 ; Query CbirOr438 ; Align 1135 169 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr449PN Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 45 -> 126 Target range: 463 -> 703 46 : LeuPheIlePheThrLeuLeuProIleLeuProArgIlePheGlyIlePhePheProValAsnL : 67 |||.!! !|||..!!!!|||! !|||||||||!:!|||!!.||||||.!!! |||:!!!.!: LeuLeuGlyPheValPheLeuGlnIleLeuProGlnIleLeuGlyIleIleSerProLeuThrG 464 : CTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAATTTTAGGCATAATTTCACCTCTAACCG : 527 68 : ysSerGluThrTyrArgAsnIleTyrIleThrThrGluTyrPheValAspGluGluLysTyrPh : 88 !!! !.!.||| !.!!!.:!! !:!! !|||||||||||||||||| ! :!! ! |||.! luIleAsnThr---AsnLysLeuLeuValArgThrGluTyrPheValAspTyrLysAspTyrIl 528 : AGATCAATACT---AACAAATTACTCGTTCGAACCGAATACTTTGTCGACTACAAAGATTACAT : 587 89 : eTyrPheIleMetLeuHisLeuTyrValAlaHisTyrIleAlaGlyGlyThrLeuIleGlyAla : 109 !|||.!.|||! !:!!||| ! !:!!||| !::!! ! !! !! !|||.!!::! eTyrLeuIleThrIleHisAlaThrIleAlaIleMetCysSerValThrMetGlnIleSerSer 588 : TTATCTAATCACGATCCACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGC : 650 110 : GlyValLeuLeuThrGlyTyrPheThrTyrPheCysGlyLeuPheAsnIle : 126 ! !:::||| ... :::...! !:!!.!! !!|||:!!|||.!.:!! AspIleLeuAsnAsnIlePheMetMetHisIleSerGlyMetPheGluVal 651 : GATAttttgaataacatatttatGATGCACATCAGTGGAATGTTCGAGGTA : 703 vulgar: CbirOr449PN 45 126 . LHQN01050134.1 463 703 + 108 M 25 75 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 464 703 108 + . gene_id 1 ; sequence CbirOr449PN ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 464 703 . + . LHQN01050134.1 exonerate:protein2genome:local exon 464 703 . + . insertions 0 ; deletions 1 LHQN01050134.1 exonerate:protein2genome:local similarity 464 703 108 + . alignment_id 1 ; Query CbirOr449PN ; Align 464 46 75 ; Align 539 72 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr436 Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 128 -> 215 Target range: 445 -> 703 129 : LeuTyrAlaPheCysAsnLeuIleIlePheIleLeuLeuProPheLeuProLysIleAlaGlyI : 150 :!!!:!:!!|||! |||:!! !|||:!!!!!|||! !.!!||||||:!!||| !|||| ValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuProGlnIleLeuGlyI 446 : GTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAATTTTAGGCA : 509 151 : leIleLeuPheIleAsnGluSerGlnLeuHisHisThrValTyrIleMetThrGluTyrPheVa : 171 |||||! ! !:!!!.!|||! !.!. ! :!!! !:!! !:!! |||||||||||||| leIleSerProLeuThrGluIleAsnThr---AsnLysLeuLeuValArgThrGluTyrPheVa 510 : TAATTTCACCTCTAACCGAGATCAATACT---AACAAATTACTCGTTCGAACCGAATACTTTGT : 569 172 : lAspArgGluLysTyrPheTyrLeuIleLeuLeuHisMetAspAlaAlaValCysIleGlyAla : 192 |||| !:!! ! |||.!!||||||||| !:!!||| ! ! !|||:!! !.!!!.! lAspTyrLysAspTyrIleTyrLeuIleThrIleHisAlaThrIleAlaIleMetCysSerVal 570 : CGACTACAAAGATTACATTTATCTAATCACGATCCACGCGACTATAGCAATAATGTGTAGTGTG : 632 193 : IleAlaValIleGlyIleAlaThrMetPheValGlyTyrMetLysHisAlaCysAlaMetPheL : 214 ! ! ! !|||.!!! !! !! ::: :::|||! !||| ! !!!.!||||||: ThrMetGlnIleSerSerAspIleLeuAsnAsnIlePheMetMetHisIleSerGlyMetPheG 633 : ACTATGCAAATTAGCAGCGATAttttgaataacatatttatGATGCACATCAGTGGAATGTTCG : 698 215 : ysIle : 215 !!:!! luVal 699 : AGGTA : 703 vulgar: CbirOr436 128 215 . LHQN01050134.1 445 703 + 111 M 31 93 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 446 703 111 + . gene_id 1 ; sequence CbirOr436 ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 446 703 . + . LHQN01050134.1 exonerate:protein2genome:local exon 446 703 . + . insertions 0 ; deletions 1 LHQN01050134.1 exonerate:protein2genome:local similarity 446 703 111 + . alignment_id 1 ; Query CbirOr436 ; Align 446 129 93 ; Align 539 161 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr433 Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 126 -> 215 Target range: 439 -> 703 127 : IleIleLeuTyrThrValCysAsnLeuLeuIlePheIleLeuLeuProValLeuProThrAlaA : 148 ||| !:!!!:!:!! !!! |||||| !|||:!!!!!|||! !:!!|||||| ! ! IleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuProGlnIleL 440 : ATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAATTT : 503 149 : laGlyIleIleLeuPheIleAsnGluSerGlnLeuHisHisThrValTyrIleMetThrGluTy : 169 !|||||||||! ! !:!!!.!|||! !.!. ! :!!! !:!! !:!! |||||||| euGlyIleIleSerProLeuThrGluIleAsnThr---AsnLysLeuLeuValArgThrGluTy 504 : TAGGCATAATTTCACCTCTAACCGAGATCAATACT---AACAAATTACTCGTTCGAACCGAATA : 563 170 : rPheValAspArgGluLysTyrPheTyrLeuIleLeuLeuHisMetAspValAlaValCysIle : 190 |||||||||| !:!! ! |||.!!||||||||| !:!!||| ! !:!!|||:!! ! rPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAlaThrIleAlaIleMetCys 564 : CTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCGACTATAGCAATAATGTGT : 626 191 : GlyAlaIleAlaValIleSerThrAlaThrMetLeuIleGlyTyrCysLysTyrIleCysAlaM : 212 .!!!.!! ! ! !||||||!:!! !! ::: ::: ! !:!!||| !!!.!| SerValThrMetGlnIleSerSerAspIleLeuAsnAsnIlePheMetMetHisIleSerGlyM 627 : AGTGTGACTATGCAAATTAGCAGCGATAttttgaataacatatttatGATGCACATCAGTGGAA : 692 213 : etPheLysIle : 215 |||||:!!:!! etPheGluVal 693 : TGTTCGAGGTA : 703 vulgar: CbirOr433 126 215 . LHQN01050134.1 439 703 + 107 M 33 99 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 440 703 107 + . gene_id 1 ; sequence CbirOr433 ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 440 703 . + . LHQN01050134.1 exonerate:protein2genome:local exon 440 703 . + . insertions 0 ; deletions 1 LHQN01050134.1 exonerate:protein2genome:local similarity 440 703 107 + . alignment_id 1 ; Query CbirOr433 ; Align 440 127 99 ; Align 539 161 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr467IC Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 85 -> 174 Target range: 887504 -> 887768 86 : LeuThrLeuIleLeuLeuCysGlyIlePheValGlyValPheAsnAlaPheLeuProA : 105 !!!:!!:!!:!!! !:!!||| ! ..! ! !|||!.. !! :!! !! PheSerIleValTyrValCysIleSerAlaThrMetTyrPheThrLeuSerIleAlaV 887505 : TTCTCTATAGTTTACGTCTGCATATCGGCGACAATGTATTTCACACTTTCGATTGCCG : 887562 106 : snIleLeuAspAlaAlaLeuSerThrAsnLysSerGlnSerProSerThrLeuHisIl : 124 :!!:!! !! !! !|||!:!! !|||::!!!!:!! !! !..!||||||:!! alValIlePheGluGluLeuAsnLysAsnArgThrGluProArgGlnThrLeuTyr-- 887563 : TGGTCATCTTCGAGGAATTGAATAAAAACCGGACCGAACCCAGACAGACTCTATAC-- : 887619 125 : eMetThrGluTyrPheIleAspGlnLysLysTyrPheTyrLeuIleMetMetHisLys : 143 ..!|||||| !||||||...:::||||||||||||||||||! ||| -ProValGluTyrHisIleAspSerGluLysTyrPheTyrLeuIleThrAlaHisCys 887620 : -CCAGTGGAGTACCACATCgacagtgaaaaatatttttacctgATTACAGCTCATTGT : 887673 144 : GluAlaAlaSerCysIleGlyValThrAlaIleValAlaThrGlyThrMetThrMetL : 163 ! |||:!!!!! :!! !:!! ! !! !|||!.! !! !|||||| !!!:: TyrAlaSerThrValLeuLeuLeuLeuGlnThrValValHisAspThrMetTyrIleV 887674 : TACGCCTCGACAGTACTTCTTCTGCTTCAAACTGTCGTACACGACACAATGTACATTG : 887733 164 : euTyrPheGlnHisAlaCysGlyMetPheMetIle : 174 !! !!||||||!.!|||!.!:!:||| :!! alLeuValGlnHisGlyCysAlaLeuPheAlaVal 887734 : TTCTGGTCCAACATGGCTGCGCTTTATTCGCAGTT : 887768 vulgar: CbirOr467IC 85 174 . KQ414735.1 887504 887768 + 105 M 38 114 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 887505 887768 105 + . gene_id 1 ; sequence CbirOr467IC ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 887505 887768 . + . KQ414735.1 exonerate:protein2genome:local exon 887505 887768 . + . insertions 0 ; deletions 1 KQ414735.1 exonerate:protein2genome:local similarity 887505 887768 105 + . alignment_id 1 ; Query CbirOr467IC ; Align 887505 86 114 ; Align 887619 125 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr468 Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 164 -> 213 Target range: 887621 -> 887768 165 : ThrGluTyrPheValAspGlnGluArgTyrPheTyrLeuIleLeuLeuHisIleAsnT : 184 ..!|||||| !:!!|||...|||:::||||||||||||||| ! !||| ! !!. ValGluTyrHisIleAspSerGluLysTyrPheTyrLeuIleThrAlaHisCysTyrA 887622 : GTGGAGTACCACATCgacagtgaaaaatatttttacctgATTACAGCTCATTGTTACG : 887679 185 : hrAlaThrTyrIleGlyMetIleValAlaValAlaThrGlyThrValLeuIleGlyCy : 203 !!:!!||| :!! !:!!:!! !.!!|||!.! !! !|||:!!! !|||! ! laSerThrValLeuLeuLeuLeuGlnThrValValHisAspThrMetTyrIleValLe 887680 : CCTCGACAGTACTTCTTCTGCTTCAAACTGTCGTACACGACACAATGTACATTGTTCT : 887736 204 : sIleIleHisAlaCysGlyLeuPheSerIle : 213 :!! !|||!.!|||!.!||||||:!!:!! uValGlnHisGlyCysAlaLeuPheAlaVal 887737 : GGTCCAACATGGCTGCGCTTTATTCGCAGTT : 887768 vulgar: CbirOr468 164 213 . KQ414735.1 887621 887768 + 100 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 887622 887768 100 + . gene_id 1 ; sequence CbirOr468 ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 887622 887768 . + . KQ414735.1 exonerate:protein2genome:local exon 887622 887768 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 887622 887768 100 + . alignment_id 1 ; Query CbirOr468 ; Align 887622 165 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr467IC Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 101 -> 175 Target range: 33634 -> 33415 102 : PheLeuProAsnIleLeuAspAlaAlaLeuSerThrAsnLysSerGlnSerProSerThr : 121 |||:!!|||:!!.!!:!!|||!.!|||||||||! !|||:!!|||!:!!.! !||| ! PheIleProHisPheIleAspValAlaLeuSerLysAsnGluSerArgLysLeuSerLeu 33634 : TTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAACGAGTCACGAAAATTAAGTTTG : 33577 122 : LeuHisIleMetThrGluTyrPheIleAspGlnLysLysTyrPheTyrLeuIleMetMet : 141 :!!:!! .!! ! ||| !||||||||| ||||||:::||| :::||| MetTyr---ProAlaTyrTyrGlyIleAspGlnAspLysTyrTyrTyrTyrLeuMetAla 33576 : ATGTAC---CCTGCCTATTACGGCATTGACCAGGacaagtattattattatctaatgGCT : 33520 142 : HisLysGluAlaAlaSerCysIleGlyValThrAlaIleValAlaThrGlyThrMetThr : 161 |||! ! !::!|||.!!... ! ! !! !!.!.!!:!!:!! !! !|||!!: ! HisMetMetSerAlaGlyAlaAlaValPhePheValPheMetSerCysAspThrIleTyr 33519 : CACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATGTCCTGCGACACGATTTAT : 33460 162 : MetLeuTyrPheGlnHisAlaCysGlyMetPheMetIleAla : 175 ||| ! ! !!|||||||||||||||:!!!!..!.|||:!! MetAsnIleValGlnHisAlaCysGlyLeuLeuPheIleSer 33459 : ATGAATATCGTTCAACACGCGTGCGGATTGTTGTTCATTTCC : 33416 vulgar: CbirOr467IC 101 175 . KQ414772.1 33634 33415 - 120 M 22 66 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33416 33634 120 - . gene_id 1 ; sequence CbirOr467IC ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33416 33634 . - . KQ414772.1 exonerate:protein2genome:local exon 33416 33634 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 33416 33634 120 - . alignment_id 1 ; Query CbirOr467IC ; Align 33635 102 66 ; Align 33569 125 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr467IC Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 84 -> 175 Target range: 42745 -> 42475 85 : ValLeuThrLeuIleLeuLeuCysGlyIlePheValGlyValPheAsnAlaPheLeuPro : 104 :::...|||:!!! ! !:!!||| !!.!! :!! !:!!! ! !!!:!:!!||| IlePheThrValThrGlyIleCysCysPheThrMetPheIleSerAlaProTyrIlePro 42745 : attttcacagTAACTGGAATATGTTGCTTCACAATGTTTATCTCTGCGCCTTATATACCG : 42688 105 : AsnIleLeuAspAlaAlaLeuSerThrAsnLysSerGlnSerProSerThrLeuHisIle : 124 :!!:!!! !|||!.! !||||||! !|||:!!|||!:!!.! !.!! !:!!:!! HisValTyrAspValMetLeuSerLysAsnGluSerArgLysLeuGlyPheIleTyr--- 42687 : CATGTATATGATGTTATGTTATCGAAAAACGAGTCACGAAAGTTGGGTTTCATTTAC--- : 42628 125 : MetThrGluTyrPheIleAspGlnLysLysTyrPheTyrLeuIleMetMetHisLysGlu : 144 .!! ! ||| !:!!|||||| ! ||||||!:!|||! !|||!!: |||! ! ! ProAlaTyrTyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAlaHisMetThr 42627 : CCTGCCTATTATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCTCACATGACA : 42571 145 : AlaAlaSerCysIleGlyValThrAlaIleValAlaThrGlyThrMetThrMetLeuTyr : 164 :!!!.!.!!! :!:! ! !! !.!!.!!:!!:!! !! !|||!!: !||| ! ! SerGlyGlyLeuValValPhePheThrPheIleSerCysAspThrIleTyrMetAsnIle 42570 : TCTGGGGGCTTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTACATGAATATC : 42511 165 : PheGlnHisAlaCysGlyMetPheMetIleAla : 175 ! |||||||||||||||:!!!!.:!!|||:!! ValGlnHisAlaCysGlyLeuLeuLeuIleSer 42510 : GTGCAACACGCGTGCGGATTGTTGTTGATTTCT : 42476 vulgar: CbirOr467IC 84 175 . KQ414772.1 42745 42475 - 114 M 39 117 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42476 42745 114 - . gene_id 2 ; sequence CbirOr467IC ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42476 42745 . - . KQ414772.1 exonerate:protein2genome:local exon 42476 42745 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 42476 42745 114 - . alignment_id 2 ; Query CbirOr467IC ; Align 42746 85 117 ; Align 42629 125 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr471NTE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 94 -> 171 Target range: 14112 -> 13884 95 : SerProHisIleLeuAspIleValMetProLysAsnGluSerTyrAlaIleHisThrMet : 114 !!!||||||||||||||||||:!!:!:||||||||||||||| ! !:!! !!!: ThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIle 14112 : ACACCGCATATTTTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATT : 14055 115 : GluMetValThrLysTyrPheValValSerGluLysTyrTyrPheLeuIleLeuValHis : 134 !.!! ! ||||||..!! !..!.!.|||||| !! ! ! !|||:!!..!||| ---TyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHis 14054 : ---TACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCAC : 13998 135 : ThrAsnAlaAlaCysSerValGlyLeuIleValLeuValGlyThrGlyThrMetMetIle : 154 ! ! :!!!.! ! !|||! !!!! !|||! !|||!.! !! !|||! ||| MetAlaSerValIleLeuValValPheTyrValTyrValAlaCysAspThrSerTyrIle 13997 : ATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATA : 13938 155 : SerTyrIleGluHisValCysGlyMetPheGluIleAlaSerTyrArgIle : 171 ! ! !:!::!!|||! !||||||:!!!!.! :!::!!.!. :::||| TyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly***LysIle 13937 : TACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaatt : 13885 vulgar: CbirOr471NTE 94 171 . KQ414772.1 14112 13884 - 104 M 20 60 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13885 14112 104 - . gene_id 1 ; sequence CbirOr471NTE ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13885 14112 . - . KQ414772.1 exonerate:protein2genome:local exon 13885 14112 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 13885 14112 104 - . alignment_id 1 ; Query CbirOr471NTE ; Align 14113 95 60 ; Align 14053 116 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr471NTE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 94 -> 171 Target range: 14149 -> 13921 95 : SerProHisIleLeuAspIleValMetProLysAsnGluSerTyrAlaIleHisThrMet : 114 !!!||||||||||||||||||:!!:!:||||||||||||||| ! !:!! !!!: ThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIle 14149 : ACACCGCATATTTTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATT : 14092 115 : GluMetValThrLysTyrPheValValSerGluLysTyrTyrPheLeuIleLeuValHis : 134 !.!! ! ||||||..!! !..!.!.|||||| !! ! ! !|||:!!..!||| ---TyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHis 14091 : ---TATCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCAC : 14035 135 : ThrAsnAlaAlaCysSerValGlyLeuIleValLeuValGlyThrGlyThrMetMetIle : 154 ! ! :!!!.! ! !|||! !!!! !|||! !|||!.! !! !|||! ||| MetAlaSerValIleLeuValValPheTyrValTyrValAlaCysAspThrSerTyrIle 14034 : ATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATA : 13975 155 : SerTyrIleGluHisValCysGlyMetPheGluIleAlaSerTyrArgIle : 171 ! ! !:!::!!|||! !||||||:!!!!.! :!::!!.!. :::||| TyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly***LysIle 13974 : TACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaatt : 13922 vulgar: CbirOr471NTE 94 171 . LHQN01017803.1 14149 13921 - 104 M 20 60 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13922 14149 104 - . gene_id 1 ; sequence CbirOr471NTE ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13922 14149 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13922 14149 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 13922 14149 104 - . alignment_id 1 ; Query CbirOr471NTE ; Align 14150 95 60 ; Align 14090 116 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr471NTE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 80 -> 167 Target range: 26246 -> 25991 81 : PheAlaLeuCysGlyIleLeuSerThrCysIleMetIleTyrSerProHisIleLeuAsp : 100 .!.:!!||||||!.! !|||! !! !|||:!: !.!! |||||| ||||||||| IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerPro---IleLeuAsp 26246 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCG---ATTCTGGAC : 26192 101 : IleValMetProLysAsnGluSerTyrAlaIleHisThrMetGluMetValThrLysTyr : 120 |||:!!|||||| !||||||!!! ||| !.. !.!.! !.!! ! ||| IleLeuMetProLeuAsnGluThrArgAla---ArgLeuPheValTyrProAlaTyrTyr 26191 : ATCCTTATGCCGTTGAACGAGACGCGAGCA---CGGTTGTTCGTCTATCCAGCTTACTAT : 26135 121 : PheValValSerGluLysTyrTyrPheLeuIleLeuValHisThrAsnAlaAlaCysSer : 140 ||||||! !..!!!:||||||:!!!:!||||||:!!! !|||! ! !! !!.! ! PheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValVal 26134 : TTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTA : 26075 141 : ValGlyLeuIleValLeuValGlyThrGlyThrMetMetIleSerTyrIleGluHisVal : 160 :!! !:!! !|||!!! !!.! !! !.!!! :!:! ! !:!::!!|||!.! MetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAla 26074 : ATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCT : 26015 161 : CysGlyMetPheGluIleAla : 167 ||||||:!!!!.! |||||| CysGlyLeuLeuAlaIleAla 26014 : TGCGGATTGTTGGCCATTGCA : 25992 vulgar: CbirOr471NTE 80 167 . LHQN01017803.1 26246 25991 - 103 M 16 48 G 1 0 M 13 39 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25992 26246 103 - . gene_id 2 ; sequence CbirOr471NTE ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25992 26246 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25992 26246 . - . insertions 0 ; deletions 2 LHQN01017803.1 exonerate:protein2genome:local similarity 25992 26246 103 - . alignment_id 2 ; Query CbirOr471NTE ; Align 26247 81 48 ; Align 26199 98 39 ; Align 26160 112 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr470 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 117 -> 224 Target range: 26279 -> 25958 118 : MetAsnIleTyrThrIleSerIleMetValPheLeuCysIleCysMetValLeuPheVal : 137 :!!:::.!!||| !! ! ! !! ||| !:!!! :!!||| !.!||||||:!! LeuSerPheTyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMet 26279 : CTGTCATTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATG : 26222 138 : PheLeuGluIleTrpProIleMetLeuAspPheValValProLeuAsnGluSerArgPro : 157 ! !||| !.!! ! !! !!:||||||.!!:!!:!!||||||||||||!!!||| !! CysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAla 26221 : TGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCA : 26162 158 : ArgLysMetHisValValAlaGluTyrPheIleAspArgGluLysTyrPheProPheMet : 177 ||| !.!. ! ! !||| ! ||||||:!!|||..!!!:|||||| ! !!!.!!: ArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIle 26161 : CGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATC : 26102 178 : LeuLeuHisGluIleValAlaCysLeuValGlyGlyValThrLeuLeuSerThrGlyThr : 197 :!! !||| ! !:!!!.! :!!:!! ! ! !..!!!!! !:!! !! !.!! ValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 26101 : GTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 26042 198 : IleCysMetIleTyrAlaSerHisValCysGlyMetLeuLysIleValSerPheArgIle : 217 ! !! !:!! ! !!.!..!|||!.!||||||:!!||| |||!.!.!!! !:!! AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***LeuVal 26041 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTT : 25982 218 : GluHisAlaLeuGlyLysAsn : 224 :!! !||| !:!!||| GlnGlyGlnLeuMetGluAsn 25981 : CAAGGACAATTAATGGAAAAT : 25959 vulgar: CbirOr470 117 224 . LHQN01017803.1 26279 25958 - 113 M 107 321 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25959 26279 113 - . gene_id 1 ; sequence CbirOr470 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25959 26279 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25959 26279 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25959 26279 113 - . alignment_id 1 ; Query CbirOr470 ; Align 26280 118 321 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr461 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 119 -> 214 Target range: 457129 -> 457411 120 : LysArgMetThrIleArgIleIleIleLeuIleMetSerGlyLeuTyrPheIleGlyV : 139 |||::: ! !|||! !:!!! !! ! !!!||| ! !!||| !. LysLysLysProSerMetIleThrValSerThrTyrCysGlyAlaLeuValIleThrT 457130 : aaaaaaaaaccttcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCA : 457187 140 : alMetValTyrTrpProTyrThrPheAspIleIleMetProLysAsnGluSerTyrAl : 158 .!:!! ! !!::||| !.!!||||||:!::!:||| !||||||||| ! ! hrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgPr 457188 : CGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCC : 457244 159 : aThrArgIleMetGluPheValThrGluTyrPheValValGlnGluGlnPheHisPhe : 177 ! !..!:!! .!!..!.!!||||||||||||! !..!:!!:!!!:! ! oCysGluLeuTyr---LeuThrAlaGluTyrPheValAspMetLysLysTyrMetHis 457245 : CTGTGAGTTATAC---CTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCAT : 457298 178 : PheLeuIleLeuHisLeuSerThrValSerPheThrGlySerValLeuThrThrAlaV : 197 !:!:!!||| !|||:!!! !||| ! !.!.! !!.!:!!..! ! !|||||| TyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaA 457299 : TATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTA : 457358 198 : alGlyThrMetIleIleSerTyrPheLysHisIleCysGlyMetPheGluIle : 214 !! !:!!:!::!!|||!!! !! ! !|||:!!||||||:!!|||:!!:!! snGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457359 : ACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr461 119 214 . KQ414815.1 457129 457411 + 109 M 43 129 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457130 457411 109 + . gene_id 1 ; sequence CbirOr461 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457130 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457130 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457130 457411 109 + . alignment_id 1 ; Query CbirOr461 ; Align 457130 120 129 ; Align 457259 164 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr461 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 334 -> 380 Target range: 441705 -> 441843 335 : TyrAsnValProTrpTyrLeuAlaProValAsnIleGlnLysLeuIleLeuPheLeuL : 354 |||||| ! !!||||||! !!.!|||:!!!:! |||||||||:!!||||||:!!: TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 355 : euGlnArgSerSerLysIlePheThrLeuAsnIleSerGlyIlePheValAlaSerLe : 373 !!..!!:!|||!!!! !! !! !:!!|||:!!||||||||||||!.! !!!!!! etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 374 : uLysCysPheAlaThrLeuIle : 380 !||| !!|||:!!:!!:!!||| rLysGlyPheSerSerValIle 441821 : CAAAGGTTTTTCCTCGGTAATT : 441843 vulgar: CbirOr461 334 380 . KQ414815.1 441705 441843 + 105 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441843 105 + . gene_id 2 ; sequence CbirOr461 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441706 441843 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441843 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441843 105 + . alignment_id 2 ; Query CbirOr461 ; Align 441706 335 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr461 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 334 -> 380 Target range: 445817 -> 445955 335 : TyrAsnValProTrpTyrLeuAlaProValAsnIleGlnLysLeuIleLeuPheLeuL : 354 |||||| ! !!||||||! !!.!|||:!!!:! |||||||||:!!||||||:!!: TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 355 : euGlnArgSerSerLysIlePheThrLeuAsnIleSerGlyIlePheValAlaSerLe : 373 !!..!!:!|||!!!! !! !! !:!!|||:!!||||||||||||!.! !!!!!! etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 374 : uLysCysPheAlaThrLeuIle : 380 !||| !!|||:!!:!!:!!||| rLysGlyPheSerSerValIle 445933 : CAAAGGTTTTTCCTCGGTAATT : 445955 vulgar: CbirOr461 334 380 . KQ414815.1 445817 445955 + 105 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 445955 105 + . gene_id 3 ; sequence CbirOr461 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445818 445955 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445955 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 445955 105 + . alignment_id 3 ; Query CbirOr461 ; Align 445818 335 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr451PN Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 118 -> 207 Target range: 478641 -> 479212 119 : GluTyrPheValAspGluGluGlnTyrPheTyrPheIleLeuLeuHisLeuTyrValS : 138 |||||||||:!!||||||::::::|||||| ||||||::: |||:!!|||:!!| GluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValTyrLeuS 478642 : GAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGTACCTGT : 478699 139 : erGlnPheAlaAlaGlyGlyThrLeuLeuGlyGlyAlaIleValMetThrGlyTyrVa : 157 || !.!. ! !!.! !..!! !:!!!.! !! ! !:!!! ! !!:::! erLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMetTrpMe 478700 : CGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTATGTGGAT : 478756 158 : lThrTyrPheCysGlyLeuPheAsnIleAla{Se} >>>> Target Intron 1 : 168 !..!:!! ! !||||||!:!|||||| !{||} 316 bp tValHisThrIleGlyLeuTyrAsnIleIle{Se}++ 478757 : GGTGCATACTATCGGCTTGTATAATATCATA{AG}gt..................... : 478793 169 : >>>> {r}TyrArgIleGluLysAlaMetArgIleAsnSerAspGluValSerAsnG : 185 {|}|||||||||:!!||| !:!:||| :!!! !! !|||. ++{r}TyrArgIleGlnLysIleValArg------------LysAspLeuAsnS 478794 : ....ag{T}TATCGAATTCAAAAAATCGTTCGT------------AAGGACTTGAACA : 479144 186 : lyLysAsnLysArgGluIleAspLysLysIleSerHisAlaValAspIleHisArgTh : 204 !!::: !!.! !.!.||| ! ||| :!:! !||||||:!!! !! !|||||||| erArgLeuAsnThrAsnIleLysLysGlyValIleHisAlaIleAlaThrHisArgTh 479145 : GTCGTTTGAATACGAACATTAAAAAAGGTGTGATACATGCCATAGCTACTCATAGAAC : 479201 205 : rAlaLeuGlu : 207 ||||:!!:!! rAlaIleGln 479202 : AGCAATACAG : 479212 vulgar: CbirOr451PN 118 207 . KQ414815.1 478641 479212 + 102 M 49 147 S 0 2 5 0 2 I 0 312 3 0 2 S 1 1 M 8 24 G 4 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478642 479212 102 + . gene_id 1 ; sequence CbirOr451PN ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 478642 478790 . + . KQ414815.1 exonerate:protein2genome:local exon 478642 478790 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 478791 478792 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 478791 479106 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 479105 479106 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 479107 479212 . + . KQ414815.1 exonerate:protein2genome:local exon 479107 479212 . + . insertions 0 ; deletions 4 KQ414815.1 exonerate:protein2genome:local similarity 478642 479212 102 + . alignment_id 1 ; Query CbirOr451PN ; Align 478642 119 147 ; Align 479108 169 24 ; Align 479132 181 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr474 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 335 -> 394 Target range: 454310 -> 454562 336 : AsnValSerTrpTyrLeuAlaProLeuHisIleGlnLysMetIleLeuLeuLeuLeuG : 355 ||| ! !|||||| !!.!|||||| !! !!:!|||:!! !||||||:!!|||| AsnSerHisTrpTyrAspValProLeuAspAlaArgLysLeuTyrLeuLeuIleLeuG 454311 : AATTCACACTGGTACGATGTTCCTCTTGATGCTCGAAAGTTGTACCTACTCATTCTGC : 454368 356 : lnArgSerAsnLysIlePheThrLeuSerValGlyGlyLeuPheThrGlySerLeuGl : 374 ||||||||! |||! !! !:!!!!!|||:!!..!! !|||!:!..!..!||||||:! lnArgSerMetLysSerSerSerPheSerIleSerAspLeuTyrValSerSerLeuGl 454369 : AACGAAGTATGAAAAGCTCCTCGTTCTCCATATCCGATTTATACGTTTCGTCGTTACA : 454425 375 : uCysPheAlaThr >>>> Target Intron 1 >>>> LeuValSerAlaSerV : 384 ! ! .!.::!.!! 75 bp |||||||||.!!.!!: nGlyLeuSerAla++ ++LeuValSerThrGlyM 454426 : GGGACTAAGCGCGgt.........................agTTAGTAAGCACGGGCA : 454530 385 : alSerTyrPheThrPheMetPheSerMetGln : 394 !!|||||||||||||||:!:!:!|||:!!||| etSerTyrPheThrPheLeuTyrSerValGln 454531 : TGTCGTATTTCACGTTCCTCTATTCCGTGCAA : 454562 vulgar: CbirOr474 335 394 . KQ414815.1 454310 454562 + 125 M 43 129 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 454311 454562 125 + . gene_id 1 ; sequence CbirOr474 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 454311 454439 . + . KQ414815.1 exonerate:protein2genome:local exon 454311 454439 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 454440 454441 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 454440 454514 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 454513 454514 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 454515 454562 . + . KQ414815.1 exonerate:protein2genome:local exon 454515 454562 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 454311 454562 125 + . alignment_id 1 ; Query CbirOr474 ; Align 454311 336 129 ; Align 454515 379 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr473NTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 100 -> 156 Target range: 485761 -> 485929 101 : ArgThrMetTyrIleMetThrGluTyrPheIleAspArgGluLysTyrCysTyrPheI : 120 ||||||!!: !|||! :!!|||:!!|||:!!|||!:!:!!||||||! !||| !| ArgThrIleProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProI 485762 : CGGACGATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTA : 485819 121 : leMetLeuTyrGluTyrAlaAlaTyrCysIleAlaGlyPheAlaAlaValGlyThrGl : 139 || !:!!! ! ! ! ! !|||!.!!.!.!.!.! !:!!.!!||| leAlaAlaHisValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGl 485820 : TTGCAGCACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccga : 485876 140 : yThrMetLeuLeuAlaIleLeuGlnHisMetCysGlyMetPheSerIleVal : 156 :::::::::||||||:!!||||||! ||||||:!!!:!!!!|||||| uIleLeuIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIleVal 485877 : aatattaattatggCGATAATACAGCACACCTGTGGTTTGTATACAATCGTT : 485929 vulgar: CbirOr473NTE 100 156 . KQ414815.1 485761 485929 + 108 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485762 485929 108 + . gene_id 1 ; sequence CbirOr473NTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485762 485929 . + . KQ414815.1 exonerate:protein2genome:local exon 485762 485929 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485762 485929 108 + . alignment_id 1 ; Query CbirOr473NTE ; Align 485762 101 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr460 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 119 -> 214 Target range: 457129 -> 457411 120 : LysHisPheThrThrIleValValIlePheLeuValCysGlyLeuCysSerAsnSerG : 139 ||| ::!!!::!!..!:!!! ! ! !|||||| ! !! !!!! LysLysLysProSerMetIleThrValSerThrTyrCysGlyAlaLeuValIleThrT 457130 : aaaaaaaaaccttcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCA : 457187 140 : lyIleValTyrTrpProTyrIleLeuAspIleIleValProAsnAsnGluSerTyrAl : 158 !:!: ! !!::||| :!!|||||||||:!:|||||| ||||||||| ! ! hrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgPr 457188 : CGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCC : 457244 159 : aIleHisThrMetGlnPheValThrLysTyrPheAsnValSerGluLysTyrTyrPhe : 177 ! !.!. :!: ! .!!..!.!!:!!|||||| !! !! !:!!|||||| ! oCysGlu---LeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHis 457245 : CTGTGAG---TTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCAT : 457298 178 : LeuValLeuValHisLeuAsnAlaAlaIleThrThrGlyLeuIleValSerValGlyT : 197 ! !:!!:!!!.!|||:!!! !.!!..!:!! !! !!.! !! !..!! !..!!.!! TyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaA 457299 : TATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTA : 457358 198 : hrGluThrMetIlePheSerTyrLeuLysHisIleCysGlyMetPheGluIle : 214 .!|||:!!:!::!!.!.!!! !!:!! !|||:!!||||||:!!|||:!!:!! snGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457359 : ACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr460 119 214 . KQ414815.1 457129 457411 + 108 M 41 123 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457130 457411 108 + . gene_id 1 ; sequence CbirOr460 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457130 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457130 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457130 457411 108 + . alignment_id 1 ; Query CbirOr460 ; Align 457130 120 123 ; Align 457253 162 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr460 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 309 -> 376 Target range: 489892 -> 490326 310 : LeuThrIleThrPheAlaCysAsnTyrValGlyGlnGluValThrAspHisSerAsnH : 329 ||| ! !! !||| !|||||||||:!!||||||! ||| ::: |||::!. LeuPheTyrIlePheIleCysAsnTyrIleGlyGlnGlyValLysAsnCysSerSerG 489893 : TTGTTTTACATATTCATTTGCAATTATATTGGACAGGGagtaaaaaattgcagttcTG : 489950 330 : isValTyrValIle{Il} >>>> Target Intron 1 >>>> {e}TyrAsn<- : 337 !.|||!:! ! !{||} 230 bp {|}! !||| luValPheTyrAsp{Il}++ ++{e}CysAsnSe 489951 : AGGTATTTTATGAC{AT}gt.........................ag{A}TGCAACAG : 490204 338 : >ValAlaTrpTyrLeuAlaProLeuHisIleGlnLysLeuIleLeuPheLeuLeuGln : 355 ||| !|||||| !||||||:!! !||||||||||||:!:|||.!!:!!:!!||| rValAsnTrpTyrThrAlaProIleAlaIleGlnLysLeuLeuLeuIleIleMetGln 490205 : CGTGAATTGGTACACGGCTCCAATTGCCATACAAAAATTGCTGTTGATCATTATGCAA : 490261 356 : ArgSerAsnLysIlePheSerLeuSerValGlyGlyLeuPheThrAlaSerLeuGluC : 375 !.!!!!! ::!! !! !|||:!!!!!:!! !|||:!!!:!! !:!!|||!!!!!: AsnThrIleArgAsnSerSerIleThrLeuPheGlyMetTyrIleSerSerPheAspG 490262 : AATACTATACGAAATTCTTCAATAACACTCTTCGGAATGTATATATCGTCTTTCGATG : 490321 376 : ysPhe : 376 !!||| lyPhe 490322 : GTTTC : 490326 vulgar: CbirOr460 309 376 . KQ414815.1 489892 490326 + 102 M 24 72 S 0 2 5 0 2 I 0 226 3 0 2 S 1 1 M 2 6 G 0 3 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 489893 490326 102 + . gene_id 2 ; sequence CbirOr460 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 489893 489966 . + . KQ414815.1 exonerate:protein2genome:local exon 489893 489966 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 489967 489968 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 489967 490196 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 490195 490196 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 490197 490326 . + . KQ414815.1 exonerate:protein2genome:local exon 490197 490326 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 489893 490326 102 + . alignment_id 2 ; Query CbirOr460 ; Align 489893 310 72 ; Align 490198 335 6 ; Align 490207 337 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr460 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 145 -> 214 Target range: 485722 -> 485926 146 : IleLeuAspIleIleValProAsnAsnGluSerTyrAlaIleHisThrMetGlnPheV : 165 ||||||||||||:!::!!||| ||| ! !!! ! !! !..|||!!:! .!. IleLeuAspIleLeuIleProLeuAsnTyrThrArgPro---ArgThrIleProIleA 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCG---CGGACGATTCCTATAA : 485777 166 : alThrLysTyrPheAsnValSerGluLysTyrTyrPheLeuValLeuValHisLeuAs : 184 !:!!:!!:!!||| !! !..!:!!||||||!:!!:!! !:!! !!.!|||:!! snSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValVa 485778 : ACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGT : 485834 185 : nAlaAlaIleThrThrGlyLeuIleValSerValGlyThrGluThrMetIlePheSer : 203 ! ! !:!!! !! !||| !||||||! !:!!.!!|||||| :::|||...:!! lLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAla 485835 : TCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCG : 485891 204 : TyrLeuLysHisIleCysGlyMetPheGluIle : 214 :!!:!!|||! !||||||:!!!:! !||| IleIleGlnHisThrCysGlyLeuTyrThrIle 485892 : ATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr460 145 214 . KQ414815.1 485722 485926 + 100 M 13 39 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485926 100 + . gene_id 3 ; sequence CbirOr460 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485926 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 485723 485926 100 + . alignment_id 3 ; Query CbirOr460 ; Align 485723 146 39 ; Align 485762 160 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr470 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 133 -> 212 Target range: 457174 -> 457411 134 : ValLeuPheValPheLeuGluIleTrpProIleMetLeuAspPheValValProLeuA : 153 :!!:!!.!!..! |||:!!:!!!::||||||:!:||||||.!!||||||||||||| LeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuA 457175 : CTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGA : 457232 154 : snGluSerArgProArgLysMetHisValValAlaGluTyrPheIleAspArgGluLy : 172 |||||||||||||| !!:!!:!::!!:!!..!||||||||||||:!!|||! !:!!|| snGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLy 457233 : ACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAA : 457289 173 : sTyrPheProPheMetLeuLeuHisGluIleValAlaCysLeuValGlyGlyValThr : 191 ||||.!.! !!:!!!::!! !||| |||..!..! |||:!!!.!!.!..!||| sTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThr 457290 : GTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACG : 457346 192 : LeuLeuSerThrGlyThrIleCysMetIleTyrAlaSerHisValCysGlyMetLeuL : 211 ||| !:!!!.!! !:!!:!! !!!:! !!!.! !||||||||||||:!!!!!| LeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheL 457347 : TTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCA : 457406 212 : ysIle : 212 ||:!! ysLeu 457407 : AGCTT : 457411 vulgar: CbirOr470 133 212 . KQ414815.1 457174 457411 + 183 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457175 457411 183 + . gene_id 1 ; sequence CbirOr470 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457175 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457175 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457175 457411 183 + . alignment_id 1 ; Query CbirOr470 ; Align 457175 134 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr470 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 144 -> 213 Target range: 475566 -> 475773 145 : MetLeuAspPheValValProLeuAsnGluSerArgProArgLysMetHisValValA : 164 !!:||||||! !:!!:!!|||||||||||||||||||||!!! ! ! ::: IleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleArgI 475567 : ATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaa : 475624 165 : laGluTyrPheIleAspArgGluLysTyrPheProPheMetLeuLeuHisGluIleVa : 183 ||||||||||||:::..!:!!||||||||| !.!.! :!!:!!:!!:!!! !|| leGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrVa 475625 : tagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGT : 475681 184 : lAlaCysLeuValGlyGlyValThrLeuLeuSerThrGlyThrIleCysMetIleTyr : 202 |.!! !|||:!! !|||..!|||! !:!!:!!|||! !.!!|||! !! !!:!:: lThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrp 475682 : AACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGG : 475738 203 : AlaSerHisValCysGlyMetLeuLysIleVal : 213 !..!||| ! ...:::...:::|||||| LeuGlnHisCysIleSerLeuPheGluIleVal 475739 : TTGCAACATTGCATaagtttatttgaaattgtt : 475773 vulgar: CbirOr470 144 213 . KQ414815.1 475566 475773 + 125 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475567 475773 125 + . gene_id 2 ; sequence CbirOr470 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475567 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475567 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475567 475773 125 + . alignment_id 2 ; Query CbirOr470 ; Align 475567 145 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr470 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 123 -> 213 Target range: 481968 -> 482238 124 : SerIleMetValPheLeuCysIleCysMetValLeuPheValPheLeuGluIleTrpP : 143 :::||| ..!!!.:!!! ! !! :!!:!!:!!.!.:!!.!.! !.!.!!:! ! AsnIleThrAlaLeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerS 481969 : aatattacagcGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGA : 482026 144 : roIleMetLeuAspPheValValProLeuAsnGluSerArgProArgLysMetHisVa : 162 !.!!:!:|||||| !!:!!|||||||||||||||!!!||| !!!.!:!!.!.! || erPheValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProVa 482027 : GTTTCGTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGT : 482083 163 : lValAlaGluTyrPheIleAspArgGluLysTyrPheProPheMetLeuLeuHisGlu : 181 | ! !|||||||||||||||!:!:!!||||||! ! !|||!!: !!!!|||:!! lSerMetGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGln 482084 : ATCAATGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAG : 482140 182 : IleValAlaCysLeuValGlyGlyValThrLeuLeuSerThrGlyThrIleCysMetI : 201 !!:!!! !||||||! !!.!..!! !:!!:!!.!!! !! !|||:!: !:!:! TrpPheSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValM 482141 : TGGTTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTA : 482200 202 : leTyrAlaSerHisValCysGlyMetLeuLysIleVal : 213 !:!:: !..!|||!.!....!!:!!!!!! :!!||| etTrpLeuGluHisAlaAlaSerLeuPheThrLeuVal 482201 : TGTGGCTTGAACACGCTGCAAGCTTGTTCACCCTTGTA : 482238 vulgar: CbirOr470 123 213 . KQ414815.1 481968 482238 + 124 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481969 482238 124 + . gene_id 3 ; sequence CbirOr470 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481969 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 481969 482238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481969 482238 124 + . alignment_id 3 ; Query CbirOr470 ; Align 481969 124 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr470 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 120 -> 212 Target range: 464561 -> 464840 121 : TyrThrIleSerIleMetValPheLeuCysIleCysMetValLeuPheValPheLeuG : 140 ||| !:!:!:!||| |||! !!!! ! ! !!!::!!!!!.!! !!!.|||| TyrPheLeuAsnIleProValCysPheIleProValIleLeuPheIleCysLeuLeuG 464562 : TACTTCCTGAATATTCCAGTGTGCTTCATTCCCGTTATACTGTTCATCTGTTTACTCG : 464619 141 : luIleTrpProIleMetLeuAspPheValValProLeuAsnGluSerArgProArgLy : 159 ||:!!! !||| !!!:|||||| ! |||!.!|||||||||||||||||| !!!.!:! luValLeuProAspIleLeuAspValValAlaProLeuAsnGluSerArgSerHisGl 464620 : AAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATGAATCTCGTTCTCATCA : 464676 160 : sMetHisValValAlaGluTyrPheIle<->AspArgGluLysTyrPheProPheMet : 177 ! :!!..!||||||!:!|||||| |||!!!..! ! !!!:! ! ! ! nTyrLeuIleThrAlaGluPhePheIleThrAspSerSerProAsnTyrIleValThr 464677 : ATACTTAATTACCGCGGAATTTTTCATCACTGATAGTTCGCCGAATTATATCGTAACT : 464733 178 : LeuLeuHisGluIleValAlaCysLeuValGlyGlyValThrLeuLeuSerThrGlyT : 197 ! !:!! ! ! !:!!.!! !:!!:!!|||! !..!|||:!!:!!:!!:!!! !| CysValGlyThrAspIleThrLeuIleMetGlyValThrThrIleIleAlaSerGluT 464734 : TGTGTTGGTACGGATATTACTCTTATCATGGGAGTCACGACAATAATTGCCTCCGAAA : 464793 198 : hrIleCysMetIleTyrAlaSerHisValCysGlyMetLeuLysIle : 212 ||.!! !.!.:!:! !..!|||:!!|||!.!|||!!!|||||| hrPheThrPheLeuLeuLeuGlnHisIleCysAlaMetPheLysIle 464794 : CGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAATGTTCAAAATC : 464840 vulgar: CbirOr470 120 212 . KQ414815.1 464561 464840 + 119 M 48 144 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464562 464840 119 + . gene_id 4 ; sequence CbirOr470 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464562 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464562 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464562 464840 119 + . alignment_id 4 ; Query CbirOr470 ; Align 464562 121 144 ; Align 464709 169 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr470 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 0 -> 47 Target range: 484183 -> 484327 1 : MetAspPheAlaGlyGluArgTyrTyrArgPheAsnLysIleLeuLeuAsnCysPheG : 20 |||||||||||||||...!:!|||||||||||||||::!|||||||||::: .!!| MetAspPheAlaGlySerGlnTyrTyrArgPheAsnArgIleLeuLeuSerThrIleG 484184 : ATGGACTTCGCGGGCAGTCAGTATTATAGATTCAACCGAATACTTCTCTCGACAATTG : 484241 21 : lyLeuTrpPro<->SerGlnThrArgArgValLysIleLeuPheValPhePheSerAl : 38 |||||! ||| !:!..!|||!:! !..!|||.!!! ! !..!|||.!!! ! lyLeuSerProTyrAsnSerThrLysTyrThrLysPheTrpAsnThrPheIleIleLe 484242 : GTCTTTCACCATACAATTCGACGAAGTACACGAAATTCTGGAACACTTTCATCATTTT : 484298 39 : aIlePhePheSerPheIlePheValGln : 47 !:!!!!.|||||| !|||||||||||| uValLeuPheSerGlyIlePheValGln 484299 : AGTCTTATTCTCCGGTATCTTTGTTCAG : 484327 vulgar: CbirOr470 0 47 . KQ414815.1 484183 484327 + 107 M 23 69 G 0 3 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 484184 484327 107 + . gene_id 5 ; sequence CbirOr470 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 484184 484327 . + . KQ414815.1 exonerate:protein2genome:local exon 484184 484327 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 484184 484327 107 + . alignment_id 5 ; Query CbirOr470 ; Align 484184 1 69 ; Align 484256 24 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr470 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 0 -> 46 Target range: 470867 -> 471005 1 : MetAspPheAlaGlyGluArgTyrTyrArgPheAsnLysIleLeuLeuAsnCysPheG : 20 ||||||||||||||||||!:!|||||| !!:: |||...... ::: !.!!| MetAspPheAlaGlyGluGlnTyrTyrValTyrValLysPhePheSerSerIleIleG 470868 : ATGGATTTCGCTGGTGAACAGTACTATGTATacgtaaaatttttctcctctaTCATCG : 470925 21 : lyLeuTrpProSerGlnThrArgArgValLysIleLeuPheValPhePheSerAlaIl : 39 |||||||||||! ! !||| !!|||:!!|||! !!!!! ! ...||| || lyLeuTrpProTyrThrThrGlyArgLeuLysThrPheCysAsnMetPheIleTyrIl 470926 : GTCTGTGGCCGTACACAACTGGTCGACTAAAAACATTTTGCaatatgtttatttacat : 470982 40 : ePhePheSerPheIlePheVal : 46 |.!.||||||.!. !|||:!! eLeuPheSerMetAlaPheLeu 470983 : aCTATTTTCAATGGCATTTCTT : 471005 vulgar: CbirOr470 0 46 . KQ414815.1 470867 471005 + 102 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 470868 471005 102 + . gene_id 6 ; sequence CbirOr470 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 470868 471005 . + . KQ414815.1 exonerate:protein2genome:local exon 470868 471005 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 470868 471005 102 + . alignment_id 6 ; Query CbirOr470 ; Align 470868 1 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr470 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 140 -> 215 Target range: 440486 -> 440711 141 : IleTrpProIleMetLeuAspPheValValProLeuAsnGluSerArgProArgLysM : 160 :!!!::|||:!! :!!|||.!.:!!||||||||||||:!!|||||||||||| ! : LeuTyrProValSerMetAspLeuLeuValProLeuAsnLysSerArgProArgTyrL 440487 : TTATACCCAGTATCAATGGATCTGTTAGTACCATTGAACAAATCCAGACCTCGTTATC : 440544 161 : etHisValValAlaGluTyrPheIleAspArgGluLysTyrPheProPheMetLeuLe : 179 !: !:!!!:! !:!!|||.!! !|||||| !!! euGlyTyrPhePheIleLeuProSerAsnGlnIleGlnTyrIleAspPheMetThrPh 440545 : TTGGctacttttttattcttccctCTAATCAAATACAGTATATTGATTTTATGACATT : 440601 180 : uHisGluIleValAlaCysLeuValGlyGlyValThrLeuLeuSerThrGlyThrIle : 198 !:!!! !! !:!!!.! !!!!|||||| !:!!|||:!! !!!!|||! !:!!:!! eTyrGlyThrLeuValProPheValGlyLeuLeuThrValThrCysThrGluSerLeu 440602 : TTATGGGACATTAGTTCCCTTTGTGGGATTATTAACTGTAACATGCACGGAATCGCTT : 440658 199 : CysMetIleTyrAlaSerHisValCysGlyMetLeuLysIleValSerPhe : 215 !! ||| !|||! !:!!||| !!.!!:!:! !||||||..!.!!!:! LeuSerIleIleAlaMetTyrValSerSerLeuTyrLysIleThrGlyTyr 440659 : CTTAGTATTATCGCAATGTATGTGAGCAGTTTATATAAGATTACTGGGTAC : 440711 vulgar: CbirOr470 140 215 . KQ414815.1 440486 440711 + 101 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 440487 440711 101 + . gene_id 7 ; sequence CbirOr470 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 440487 440711 . + . KQ414815.1 exonerate:protein2genome:local exon 440487 440711 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 440487 440711 101 + . alignment_id 7 ; Query CbirOr470 ; Align 440487 141 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr456 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 284 -> 384 Target range: 458101 -> 458705 285 : GlnThrValLeuArgAspLysValGluGluPheLeuLeuHisLeuIleLeuAlaIleS : 304 :!!..!:!! !! !!!:!!.:!!:!!|||.!.||| ! !:!!:!!||| !|||| GluValIleAlaMetGluAsnMetLysGluLeuLeuAlaAlaMetLeuLeuMetIleS 458102 : GAGGTTATAGCAATGGAAAACATGAAGGAGCTGCTAGCTGCTATGCTACTCATGATCA : 458159 305 : erMetLeuValTyrSerPheLeuAlaAsnSerCysGlyGluGluIleThrGluHisTy : 323 || !!!:!!|||!!!||||||||||||! !..!|||:!! :!:! !!!:||| erHisPheLeuTyrThrPheLeuAlaAsnTyrAlaGlyGlnIleValMetAspHisSe 458160 : GTCACTTCCTTTACACATTTCTGGCGAACTATGCCGGGCAAATCGTGATGGATCACAG : 458216 324 : rAsnAsnMetPheSerSer{Al} >>>> Target Intron 1 >>>> {a}Tyr : 331 !! !:!!:!:|||..!!.!{.!} 304 bp {!}||| rIleAspValPheAspLys{Th}++ ++{r}Tyr 458217 : TATCGACGTTTTCGATAAA{AC}gt.........................ag{A}TAC : 458544 332 : SerIleGluTrpTyrArgAlaProIleArgValGlnLysLeuIleLeuPheLeuLeuG : 351 ! !||| !|||||||||||||||:!!|||:!!||||||! !:!!||||||:!!! !: LeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleSerG 458545 : TTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATATCAG : 458604 352 : lnArgSerCysLysMetHisGlyIleLysIleGlyGlyLeuPheThrAlaSerLeuGl : 370 !!|||||| !:!:!! !..!:!: !!: !|||:!!.!!! !||||||...|| luArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPheGl 458605 : AACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatccttcga : 458661 371 : uGlyPheAlaSerLeuSerThrAlaSerValSerTyrPheThr : 384 | ||||||:!!:!!!!!! !:!!!!!::: :::|||::: uPhePheAlaThrValThrLysSerTrpLeu***HisPheSer 458662 : atttttcgccaCGGTAACAAAATCTTGGCtatgacatttttct : 458705 vulgar: CbirOr456 284 384 . KQ414815.1 458101 458705 + 171 M 45 135 S 0 2 5 0 2 I 0 300 3 0 2 S 1 1 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458102 458705 171 + . gene_id 1 ; sequence CbirOr456 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 458102 458238 . + . KQ414815.1 exonerate:protein2genome:local exon 458102 458238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 458239 458240 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 458239 458542 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 458541 458542 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458543 458705 . + . KQ414815.1 exonerate:protein2genome:local exon 458543 458705 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458102 458705 171 + . alignment_id 1 ; Query CbirOr456 ; Align 458102 285 135 ; Align 458544 331 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr456 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 87 -> 213 Target range: 456822 -> 457411 88 : ValLysGlyPheValGluArgLeuGlnAspValCysAsnAspLeuLysAspGluLysG : 107 :!!::!! !.!! !!!:!.!:!! |||! !!! !!....||||||:!! !:!!| IleArgGluIleTyrAspAsnIleAlaAspAspTrpLysSerLeuLysAsnMetGluG 456823 : ATACGGGAGATTTACGACAATATCGCTGACGATTGGAAATCATTGAAGAACATGGAAG : 456880 108 : luIleAlaIleIleLysLysTyrAlaAsnSerAlaGluTyrIleSerIleLeuValIl : 126 |||||! ||||||:::||||||||||||.!!!.!..! .!!!!!:!! !:!! luIleGluIleIleArgLysTyrAlaAsnGlyGlyArgArgPheThrLeuAlaIleAl 456881 : AAATCGagattattcgaaaatatgcGAACGGTGGCAGGAGATTTACACTTGCAATAGC : 456937 127 : e{L} >>>> Target Intron 1 >>>> {eu}LeuAlaValCysCysAlaPhe : 134 !{:} 214 bp {!!}! !.!! !||| !!|||.!. a{I}++ ++{le}SerThrTyrCysGlyAlaLeu 456938 : A{A}gt.........................ag{TT}TCTACTTATTGTGGCGCACTG : 457175 135 : IleIleThrLeuMetProIleTyrProArgIleLeuSerThrValLeuLeuValAsnI : 154 :!!|||||| !:!!! !:!!!:!|||! !:!!|||..!! !|||:!!! !:!!||| ValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnG 457176 : GTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACG : 457235 155 : leSerArgProLeuTyrAsnMetGlnPheValThrGluTyrPheIleAspLysGluLy : 173 !|||||||||! ! .!.:!: ! .!!..!.!!|||||||||:!!|||! !:!!|| luSerArgProCys---GluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLy 457236 : AATCACGCCCCTGT---GAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAA : 457289 174 : sAsnPheTyrLeuIleLeuLeuHisThrTyrAlaPheLeuTyrIleAlaIleIleVal : 192 | !!.!.:!!! !|||:!! !|||! ! !.!!! !||| |||||| !! !..! sTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThr 457290 : GTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACG : 457346 193 : LeuValGlyGlyGlyLeuMetGlyCysAlaTyrLeuLysHisValCysGlyLeuPheS : 212 |||..!!.!..!! !! !:!: ! .!! !!:!! !||||||||||||||||||! LeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheL 457347 : TTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCA : 457406 213 : erIle : 213 .!:!! ysLeu 457407 : AGCTT : 457411 vulgar: CbirOr456 87 213 . KQ414815.1 456822 457411 + 158 M 39 117 S 0 1 5 0 2 I 0 210 3 0 2 S 1 2 M 31 93 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 456823 457411 158 + . gene_id 2 ; sequence CbirOr456 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 456823 456940 . + . KQ414815.1 exonerate:protein2genome:local exon 456823 456940 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 456941 456942 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 456941 457154 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457153 457154 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457155 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457155 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 456823 457411 158 + . alignment_id 2 ; Query CbirOr456 ; Align 456823 88 117 ; Align 457157 128 93 ; Align 457250 160 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr456 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 324 -> 372 Target range: 490182 -> 490326 325 : AsnMetPheSerSerAlaTyrSerIleGluTrpTyrArgAlaProIleArgValGlnL : 344 |||!!:.!!!:!!!!..! !!|||:!:.!.||||||! !||||||||| !:!!|||| AsnIleLeuAsnArgCysAsnSerValAsnTrpTyrThrAlaProIleAlaIleGlnL 490183 : AACATACTTAATAGATGCAACAGCGTGAATTGGTACACGGCTCCAATTGCCATACAAA : 490240 345 : ysLeuIleLeuPheLeuLeuGlnArgSerCysLysMetHisGlyIleLysIleGlyGl : 363 |||||:!:|||.!!:!!:!!|||!.!!!! ::!! !..!|||! !:!! !|| ysLeuLeuLeuIleIleMetGlnAsnThrIleArgAsnSerSerIleThrLeuPheGl 490241 : AATTGCTGTTGATCATTATGCAAAATACTATACGAAATTCTTCAATAACACTCTTCGG : 490297 364 : yLeuPheThrAlaSerLeuGluGlyPhe : 372 |:!!!:!! !:!!|||!!!!!:|||||| yMetTyrIleSerSerPheAspGlyPhe 490298 : AATGTATATATCGTCTTTCGATGGTTTC : 490326 vulgar: CbirOr456 324 372 . KQ414815.1 490182 490326 + 105 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 490183 490326 105 + . gene_id 3 ; sequence CbirOr456 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 490183 490326 . + . KQ414815.1 exonerate:protein2genome:local exon 490183 490326 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 490183 490326 105 + . alignment_id 3 ; Query CbirOr456 ; Align 490183 325 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr456 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 322 -> 375 Target range: 465755 -> 465914 323 : TyrAsnAsnMetPheSerSerAlaTyrSerIleGluTrpTyrArgAlaProIleArgV : 342 :::||| !!!:!! ! !|||..!! :!!||||||||| !|||:!!! !! PheAsnLeuArgValAsnPheArgTyrAspThrGlnTrpTyrArgLeuProLeuProA 465756 : tttaatttgcgtGTTAATTTTAGATACGATACGCAATGGTATAGACTTCCTTTACCTG : 465813 343 : alGlnLysLeuIleLeuPheLeuLeuGlnArgSerCysLysMetHisGlyIleLysIl : 361 .!|||||||||:!::!!|||:!!:!!||||||||| |||! :!!! !.!!! !:! laGlnLysLeuValIlePheIleMetGlnArgSerMetLysSerAsnValPheThrVa 465814 : CACAAAAATTAGTGATTTTCATTATGCAAAGAAGCATGAAAAGTAATGTGTTCACAGT : 465870 362 : eGlyGlyLeuPheThrAlaSerLeuGluGlyPheAlaSerLeu : 375 : !! !|||!:!..! !!|||! !:!!||| !!|||!.!:!! lCysLysLeuTyrValProSerArgGlnGlyValAlaLysVal 465871 : GTGCAAACTCTACGTTCCCTCGCGACAAGGTGTCGCAAAGGTA : 465914 vulgar: CbirOr456 322 375 . KQ414815.1 465755 465914 + 100 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 465756 465914 100 + . gene_id 4 ; sequence CbirOr456 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 465756 465914 . + . KQ414815.1 exonerate:protein2genome:local exon 465756 465914 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 465756 465914 100 + . alignment_id 4 ; Query CbirOr456 ; Align 465756 323 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr455 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 328 -> 387 Target range: 458543 -> 458798 329 : TyrAsnValGlnTrpTyrMetAlaProIleArgValGlnLysLeuIleLeuPheLeuL : 348 ||| :!!! !|||||| ||||||:!!|||:!!||||||! !:!!||||||:!!! TyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleS 458544 : TACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATAT : 458601 349 : euGlnArgSerCysLysMetTyrGlyLeuLysThrGlyGlyLeuPheIleAlaSerLe : 367 !:!!|||||| !:!:!! !..!||| ! ! !|||:!!.!!|||||||||.. erGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPh 458602 : CAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatcctt : 458658 368 : uGluGlyPheAlaSer >>>> Target Intron 1 >>>> LeuSerThrAlaS : 377 .||| ||||||:!! 78 bp !!!! !! !|||: eGluPhePheAlaThr++ ++PheMetLysAlaA 458659 : cgaatttttcgccaCGgt.........................agTTCATGAAAGCAG : 458766 378 : erIleSerTyrPheThrValIleTyrSerVal : 387 !!!!:||||||! !||||||:!!||||||:!! laMetSerTyrCysThrValLeuTyrSerIle 458767 : CGATGTCCTATTGCACGGTATTATATTCCATC : 458798 vulgar: CbirOr455 328 387 . KQ414815.1 458543 458798 + 129 M 44 132 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458544 458798 129 + . gene_id 1 ; sequence CbirOr455 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 458544 458675 . + . KQ414815.1 exonerate:protein2genome:local exon 458544 458675 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 458676 458677 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 458676 458753 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 458752 458753 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458754 458798 . + . KQ414815.1 exonerate:protein2genome:local exon 458754 458798 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458544 458798 129 + . alignment_id 1 ; Query CbirOr455 ; Align 458544 329 132 ; Align 458754 373 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr454INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 298 -> 357 Target range: 458543 -> 458798 299 : TyrAsnValGlnTrpTyrMetAlaProIleArgValGlnLysLeuIleLeuPheLeuL : 318 ||| :!!! !|||||| ||||||:!!|||:!!||||||! !:!!||||||:!!! TyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleS 458544 : TACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATAT : 458601 319 : euGlnArgSerCysLysMetPheGlyIleLysThrGlyGlyLeuPheMetAlaSerLe : 337 !:!!|||||| !:!:!! !..!:!: ! ! !|||:!!.!!!!:||||||.. erGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPh 458602 : CAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatcctt : 458658 338 : uGluCysPheAlaSer >>>> Target Intron 1 >>>> IleSerThrAlaS : 347 .||| ||||||:!! 78 bp .!!! !! !|||: eGluPhePheAlaThr++ ++PheMetLysAlaA 458659 : cgaatttttcgccaCGgt.........................agTTCATGAAAGCAG : 458766 348 : erValSerTyrPheThrValLeuTyrSerVal : 357 !!:!!||||||! !|||||||||||||||:!! laMetSerTyrCysThrValLeuTyrSerIle 458767 : CGATGTCCTATTGCACGGTATTATATTCCATC : 458798 vulgar: CbirOr454INT 298 357 . KQ414815.1 458543 458798 + 127 M 44 132 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458544 458798 127 + . gene_id 1 ; sequence CbirOr454INT ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 458544 458675 . + . KQ414815.1 exonerate:protein2genome:local exon 458544 458675 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 458676 458677 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 458676 458753 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 458752 458753 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458754 458798 . + . KQ414815.1 exonerate:protein2genome:local exon 458754 458798 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458544 458798 127 + . alignment_id 1 ; Query CbirOr454INT ; Align 458544 299 132 ; Align 458754 343 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr453PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 186 Query range: 243 -> 352 Target range: 458089 -> 458798 244 : GluValLeuGluThrAlaLeuLeuArgAspLysValGluGluPheLeuLeuHisLeuI : 263 :!!:!!|||||| !!.!:!! !! !!!:!!.:!!:!!|||.!.||| ! !:!!: GlnLeuLeuGluGluValIleAlaMetGluAsnMetLysGluLeuLeuAlaAlaMetL 458090 : CAGTTACTCGAAGAGGTTATAGCAATGGAAAACATGAAGGAGCTGCTAGCTGCTATGC : 458147 264 : lePheAlaSerAlaValLeuLeuTyrSerPheLeuAlaAsnThrSerGlyGluGluIl : 282 !!.!! !! !::! !!!!||||||!!!|||||||||||| !:!!|||:!! :! euLeuMetIleSerHisPheLeuTyrThrPheLeuAlaAsnTyrAlaGlyGlnIleVa 458148 : TACTCATGATCAGTCACTTCCTTTACACATTTCTGGCGAACTATGCCGGGCAAATCGT : 458204 283 : eIleGluHisTyrAsnAsnMetPheSerThr{Al} >>>> Target Intron 1 : 293 :!!:!!:||| !! !:!!:!:|||..!! !{.!} 304 bp lMetAspHisSerIleAspValPheAspLys{Th}++ 458205 : GATGGATCACAGTATCGACGTTTTCGATAAA{AC}gt..................... : 458241 294 : >>>> {a}TyrAsnValGlnTrpTyrMetAlaProIleArgValGlnLysLeuIleL : 310 {!}||| :!!! !|||||| ||||||:!!|||:!!||||||! !:!!| ++{r}TyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuL 458242 : ....ag{A}TACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCT : 458592 311 : euPheLeuLeuGlnArgSerCysLysMetTyrGlyLeuLysThrGlyGlyLeuPheIl : 329 |||||:!!! !:!!|||||| !:!:!! !..!||| ! ! !|||:!!.!!|| euPheIleSerGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIl 458593 : TGTTCATATCAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCAT : 458649 330 : eAlaSerLeuGluGlyPheAlaSer >>>> Target Intron 2 >>>> LeuC : 339 |||||||...||| ||||||:!! 78 bp !!! eAlaSerPheGluPhePheAlaThr++ ++PheM 458650 : TGCatccttcgaatttttcgccaCGgt.........................agTTCA : 458757 340 : ysThrAlaSerValSerTyrPheThrValIleTyrSerVal : 352 ! !|||:!!:!!||||||! !||||||:!!||||||:!! etLysAlaAlaMetSerTyrCysThrValLeuTyrSerIle 458758 : TGAAAGCAGCGATGTCCTATTGCACGGTATTATATTCCATC : 458798 vulgar: CbirOr453PI 243 352 . KQ414815.1 458089 458798 + 186 M 49 147 S 0 2 5 0 2 I 0 300 3 0 2 S 1 1 M 44 132 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458090 458798 186 + . gene_id 1 ; sequence CbirOr453PI ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 458090 458238 . + . KQ414815.1 exonerate:protein2genome:local exon 458090 458238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 458239 458240 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 458239 458542 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 458541 458542 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458543 458675 . + . KQ414815.1 exonerate:protein2genome:local exon 458543 458675 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 458676 458677 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 458676 458753 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 458752 458753 . + . intron_id 1 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458754 458798 . + . KQ414815.1 exonerate:protein2genome:local exon 458754 458798 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458090 458798 186 + . alignment_id 1 ; Query CbirOr453PI ; Align 458090 244 147 ; Align 458544 294 132 ; Align 458754 338 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr453PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 86 -> 174 Target range: 457150 -> 457411 87 : ValValIleAlaValCysCysValPheIleValThrLeuMetProIleTyrProArgI : 106 ..!||| !.!! !||| !!!.!.!.:!!:!!||| !:!!! !:!!!:!|||! !: ThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheProIleL 457151 : ACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATAT : 457208 107 : leLeuSerThrPheLeuLeuValAsnIleSerArgProLeuTyrAsnMetGlnPheVa : 125 !!|||..!! ! ! :!!! !:!!||| !|||||||||! ! .!.:!: ! .!!.. euLeuAspIleValValProLeuAsnGluSerArgProCys---GluLeuTyrLeuTh 457209 : TACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGT---GAGTTATACCTTAC : 457262 126 : lThrGluTyrPheIleAspLysGluLysAsnPheTyrLeuIleLeuLeuHisThrTyr : 144 !.!!|||||||||:!!|||! !:!!||| !!.!.:!!! !|||:!! !|||! ! ! rAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIle 457263 : AGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATC : 457319 145 : AlaPhePheTyrIleAlaIleIleThrLeuValGlyGlyGlyMetMetValTyrAlaT : 164 .!!! !.!. |||||| !! !||||||..!!.!..!! ! :!::!! .!! ThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrA 457320 : ACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGA : 457379 165 : yrLeuLysHisValCysGlyLeuPheSerIle : 174 !!:!! !||||||||||||||||||!.!:!! snValLeuHisValCysGlyLeuPheLysLeu 457380 : ACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr453PI 86 174 . KQ414815.1 457150 457411 + 120 M 33 99 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457151 457411 120 + . gene_id 2 ; sequence CbirOr453PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457151 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457151 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457151 457411 120 + . alignment_id 2 ; Query CbirOr453PI ; Align 457151 87 99 ; Align 457250 121 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr453PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 287 -> 335 Target range: 490182 -> 490326 288 : AsnMetPheSerThrAlaTyrAsnValGlnTrpTyrMetAlaProIleArgValGlnL : 307 |||!!:.!!!:!! !..! !!!:!|||.!.||||||! !||||||||| !:!!|||| AsnIleLeuAsnArgCysAsnSerValAsnTrpTyrThrAlaProIleAlaIleGlnL 490183 : AACATACTTAATAGATGCAACAGCGTGAATTGGTACACGGCTCCAATTGCCATACAAA : 490240 308 : ysLeuIleLeuPheLeuLeuGlnArgSerCysLysMetTyrGlyLeuLysThrGlyGl : 326 |||||:!:|||.!!:!!:!!|||!.!!!! ::!! ! !..!:!!! ! ! !|| ysLeuLeuLeuIleIleMetGlnAsnThrIleArgAsnSerSerIleThrLeuPheGl 490241 : AATTGCTGTTGATCATTATGCAAAATACTATACGAAATTCTTCAATAACACTCTTCGG : 490297 327 : yLeuPheIleAlaSerLeuGluGlyPhe : 335 |:!!!:!|||:!!|||!!!!!:|||||| yMetTyrIleSerSerPheAspGlyPhe 490298 : AATGTATATATCGTCTTTCGATGGTTTC : 490326 vulgar: CbirOr453PI 287 335 . KQ414815.1 490182 490326 + 102 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 490183 490326 102 + . gene_id 3 ; sequence CbirOr453PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 490183 490326 . + . KQ414815.1 exonerate:protein2genome:local exon 490183 490326 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 490183 490326 102 + . alignment_id 3 ; Query CbirOr453PI ; Align 490183 288 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr458 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 156 -> 211 Target range: 485761 -> 485926 157 : ArgAsnIleTyrIleArgThrGluTyrPheValAspGlnGluLysTyrPheTyrPheI : 176 |||!..||| !|||!.!:!!|||:!!||||||||||||:!!|||||||||||| !| ArgThrIleProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProI 485762 : CGGACGATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTA : 485819 177 : leLeuLeuHisLeuTyrAlaAsnGlnTyrIleGlyGlyGlyIleLeuLeuGlyGlyAl : 195 || ! !|||:!! ! ! ! !||||||!.! !:!!||||||.!! leAlaAlaHisValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGl 485820 : TTGCAGCACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccga : 485876 196 : aIleValValThrGlyTyrPheThrTyrPheCysGlyLeuPheAsnIle : 211 |||:::::: ..! .!. !:!! !|||||||||!:!!..||| uIleLeuIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIle 485877 : aatattaattatggCGATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr458 156 211 . KQ414815.1 485761 485926 + 110 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485762 485926 110 + . gene_id 1 ; sequence CbirOr458 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485762 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485762 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485762 485926 110 + . alignment_id 1 ; Query CbirOr458 ; Align 485762 157 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr450 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 340 -> 400 Target range: 476709 -> 476964 341 : TyrAsnValArgTrpTyrIleAlaSerValArgValGlnLysLeuIleLeuPheLeuL : 360 |||||| !..!||||||! !||| !!:!! :::|||||||||:::......:::: TyrAsnSerGluTrpTyrThrAlaProLeuSerIleGlnLysLeuLeuPheLeuIleI 476710 : TACAACTCTGAATGGTACACAGCGCCGTTATCcattcaaaaattattatttcttataa : 476767 361 : euGlnArgSerAlaLysProTyrAspIleLysPheGlyGlyLeuTyrThrAlaSerLe : 379 :! !|||!!!.!!|||||| ! ! ||| ! ! !:!!||||||||||||:! leLeuArgThrThrLysProProIleSerLysAlaValPheValTyrThrAlaSerMe 476768 : tATTACGAACAACGAAACCACCCATTTCGAAGGCAGTGTTCGTATATACTGCATCGAT : 476824 380 : uGluAsnPheAlaThr >>>> Target Intron 1 >>>> LeuSerThrAlaS : 389 !|||!:!|||.!!..! 75 bp ||| !! !:!!| tGluSerPheThrVal++ ++LeuValLysSerS 476825 : GGAAAGTTTCACGGTGgt.........................agCTGGTAAAATCAT : 476929 390 : erIleSerTyrPheThrValIleTyrSerIleGln : 400 ||:!:|||||||||! !|||||||||||||||||| erValSerTyrPheMetValIleTyrSerIleGln 476930 : CAGTGTCTTATTTCATGGTGATATACTCTATCCag : 476964 vulgar: CbirOr450 340 400 . KQ414815.1 476709 476964 + 135 M 44 132 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 476710 476964 135 + . gene_id 1 ; sequence CbirOr450 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 476710 476841 . + . KQ414815.1 exonerate:protein2genome:local exon 476710 476841 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 476842 476843 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 476842 476916 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 476915 476916 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 476917 476964 . + . KQ414815.1 exonerate:protein2genome:local exon 476917 476964 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 476710 476964 135 + . alignment_id 1 ; Query CbirOr450 ; Align 476710 341 132 ; Align 476917 385 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr450 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 334 -> 395 Target range: 483193 -> 483376 335 : TyrIlePheSerThrAlaTyrAsnValArgTrpTyrIleAlaSerValArgValGlnL : 354 !:!:!! ! !!.! !|||!:! !!.!|||||| !.!!|||:!!! !:!!|||| PheValLysMetAsnArgTyrSerAsnAsnTrpTyrGluThrSerIleProLeuGlnL 483194 : TTTGTTAAAATGAACAGATACAGCAATAATTGGTACGAAACGTCCATACCCCTGCAGA : 483251 355 : ysLeuIleLeuPheLeuLeuGlnArgSerAlaLysProTyrAspIleLysPheGlyGl : 373 |||||:!:|||.!!:!!:!!..!|||||| ! ! !! !..! ! ! ||| !|| ysLeuLeuLeuIleIleMetMetArgSerIleAspSerCysSerTyrAspPhePheGl 483252 : AATTACTGTTGATCATCATGATGAGGAGCATCGATAGTTGCAGTTATGATTTCTTCGG : 483308 374 : yLeuTyrThrAlaSerLeuGluAsnPheAlaThrLeuSerThrAlaSerIleSerTyr : 392 |!!!||||||||||||:!!:!!..!|||:!!|||:!! !! ! !||| !!.! ! yPheTyrThrAlaSerIleGlnGlyPheSerThrValHisIleIleSerProLysSer 483309 : TTTCTACACCGCTTCGATCCAAGGTTTCTCAACGGTACATATAATTTCCCCAAAAAGT : 483365 393 : PheThrVal : 395 ||| !!:!! PheProIle 483366 : TTTCCAATC : 483376 vulgar: CbirOr450 334 395 . KQ414815.1 483193 483376 + 103 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 483194 483376 103 + . gene_id 2 ; sequence CbirOr450 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 483194 483376 . + . KQ414815.1 exonerate:protein2genome:local exon 483194 483376 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 483194 483376 103 + . alignment_id 2 ; Query CbirOr450 ; Align 483194 335 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr457PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 152 -> 207 Target range: 485761 -> 485926 153 : HisAsnIleTyrMetArgThrGluTyrPheValAspGlnGluLysTyrPheTyrPheI : 172 !..!..||| !!!:!.!:!!|||:!!||||||||||||:!!|||||||||||| !| ArgThrIleProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProI 485762 : CGGACGATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTA : 485819 173 : leLeuLeuHisLeuTyrAlaValGlnTyrIleGlyGlyGlyIleLeuLeuGlyGluSe : 191 || ! !|||:!! ! ! !! !||||||!.! !:!!||||||.!! .. leAlaAlaHisValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGl 485820 : TTGCAGCACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccga : 485876 192 : rIleValMetValGlyTyrGlyThrTyrSerCysGlyLeuPheAsnIle : 207 .|||:::::::::..! ! !:!!!!!|||||||||!:!!..||| uIleLeuIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIle 485877 : aatattaattatggCGATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr457PSE 152 207 . KQ414815.1 485761 485926 + 105 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485762 485926 105 + . gene_id 1 ; sequence CbirOr457PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485762 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485762 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485762 485926 105 + . alignment_id 1 ; Query CbirOr457PSE ; Align 485762 153 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr468 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 116 -> 213 Target range: 457123 -> 457411 117 : AspThrLysArgTyrThrLeuIleLeuPheLeuCysAlaMetCysCysValValPheV : 136 ::: |||::: !!!::!! :!!! !.!! ||| !!!.!:!! !!: AsnAspLysLysLysProSerMetIleThrValSerThrTyrCysGlyAlaLeuValI 457124 : aatgataaaaaaaaaccttcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTA : 457181 137 : alGlyPheLeuSerIleTrpProGlnIleLeuSerThrIleLeuProIleAsnValSe : 155 !! ! |||..!:!!!::||| !:!!|||..!! !:!::!!|||:!:|||! !|| leThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSe 457182 : TTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATC : 457238 156 : rGlnThrGlnArgIleMetTyrValMetThrGluTyrPheValAspGlnGluArgTyr : 174 |!:: !! ..! :!:|||:!!! .!!|||||||||||||||..!:!!!:!||| rArgProCysGlu---LeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyr 457239 : ACGCCCCTGTGAG---TTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTAT : 457292 175 : PheTyrLeuIleLeuLeuHisIleAsnThrAlaThrTyrIleGlyMetIleValAlaV : 194 .!.:!!! !|||:!! !||||||! !|||..! ! |||!.! ! !..! !. MetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuT 457293 : ATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAA : 457352 195 : alAlaThrGlyThrValLeuIleGlyCysIleIleHisAlaCysGlyLeuPheSerIl : 213 .!|||!.!! !:!!:!!|||||| ! !:!!:!:|||!.!||||||||||||!.!:! hrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLe 457353 : CAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCT : 457409 214 : e : 213 ! u 457410 : T : 457411 vulgar: CbirOr468 116 213 . KQ414815.1 457123 457411 + 136 M 43 129 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457124 457411 136 + . gene_id 1 ; sequence CbirOr468 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457124 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457124 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457124 457411 136 + . alignment_id 1 ; Query CbirOr468 ; Align 457124 117 129 ; Align 457253 161 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr468 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 113 -> 214 Target range: 460943 -> 461243 114 : TyrGlyAsnAspThrLysArgTyrThrLeuIleLeuPheLeuCysAlaMetCysCysV : 133 |||||| ||| ...:::...... ! !!.!.!.! |||: TyrGlyValAspLeuIleAspIlePhePheValPheLeuAlaIleValPheLeuCysL 460944 : TATGGTGTAGATttaattgacatttttttcgtctttttaGCAATTGTATTCTTATGCC : 461001 134 : alValPheValGlyPheLeuSerIleTrpProGlnIleLeuSerThrIleLeuProIl : 152 !!:!!.!.:!!!.!!!.:!! !! !! !|||!:!|||!!!:!!! !:!: !! ! euIleMetIleAlaLeuIleProTyrLeuProArgIlePheAlaIleValThrHisGl 461002 : TAATAATGATCGCGTTAATTCCGTATTTGCCGCGGATCTTCGCGATTGTGACGCATCA : 461058 153 : eAsnValSerGlnThrGlnArgIleMetTyrValMetThrGluTyrPheValAspGln : 171 ||| !!!!!:: !! !!:!||| ! :!!!!:..!|||||| !||||||!!. nAsnArgThrArgProLeuLysIlePro---IleIleValGluTyrHisValAspHis 461059 : GAACAGAACTCGTCCGTTGAAAATACCG---ATCATCGTGGAGTATCACGTGGATCAT : 461112 172 : GluArgTyrPheTyrLeuIleLeuLeuHisIleAsnThrAlaThrTyrIleGlyMetI : 191 .!...!|||||| !!||||||:!!|||||||||||| !..! !!:!||||||.!. AsnGluTyrPheAspLeuIleIleLeuHisIleAsnPheCysHisPheIleGlyPheC 461113 : AACGAGTACTTCGATCTGATCATATTACACATTAACTTCTGCCACTTTATCGGCTTCT : 461172 192 : leValAlaValAlaThrGlyThrValLeuIleGlyCysIleIleHisAlaCysGlyLe : 210 !|||!.!:!!:!!.!!! !..!..! !:!:! ! ! ! !||| !|||..!|| ysValValIleSerAlaGluValThrAsnLeuValLeuAlaLysHisIleCysSerLe 461173 : GCGTTGTTATATCTGCTGAAGTGACAAATTTGGTACTTGCGAAACACATTTGCTCGTT : 461229 211 : uPheSerIleVal : 214 ||||..!:!!||| uPheAspLeuVal 461230 : GTTCGATCTTGTC : 461243 vulgar: CbirOr468 113 214 . KQ414815.1 460943 461243 + 122 M 48 144 G 1 0 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 460944 461243 122 + . gene_id 2 ; sequence CbirOr468 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 460944 461243 . + . KQ414815.1 exonerate:protein2genome:local exon 460944 461243 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 460944 461243 122 + . alignment_id 2 ; Query CbirOr468 ; Align 460944 114 144 ; Align 461088 163 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr468 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 143 -> 222 Target range: 448088 -> 448322 144 : GlnIleLeuSerThrIleLeuProIleAsnValSerGlnThrGlnArgIleMetTyrV : 163 ......|||... ::::!!|||!!:||||||||| ! !!!...!:!! !:!: HisPheLeuAspIleLeuMetProMetAsnValSerThrArgHisGluLeuProPheL 448089 : cattttctcgatattttaATGCCAATGAACGTATCTACACGGCACGAGCTACCCTTCC : 448146 164 : alMetThrGluTyrPheValAspGlnGluArgTyrPheTyrLeuIleLeuLeuHisIl : 182 !!!!: :!!! !||| !||||||!!:!:!!:!|||:!!! !||||||:!! !:! euIle---GlnCysPheCysAspGlnAspLysPhePheHisTyrIleLeuValPheLe 448147 : TAATT---CAATGTTTCTGTGATCAAGATAAATTCTTCCACTATATATTAGTTTTCTT : 448200 183 : eAsnThrAlaThrTyrIleGlyMetIleValAlaValAlaThrGlyThrValLeuIle : 201 :! !..! !||| !:!:||| ! !|||!.!:!!|||||| !|||..!! !:!: uIleValLeuThrIleLeuGlyGlySerValValLeuAlaThrThrThrThrTyrLeu 448201 : GATCGTTCTCACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAACGACTTACTTG : 448257 202 : GlyCysIleIleHisAlaCysGlyLeuPheSerIleValSerTyrArgIleLysGlnA : 221 !! !! ! !|||..!||||||||||||!.!|||!.!.!!!! ..!|||! ! | IlePheSerGlnHisCysCysGlyLeuPheLysIleAlaGly***GluIleMetThrA 448258 : ATATTCAGTCAACATTGTTGTGGATTGTTCAAAATTGCAGGGTAAGAAATTATGACTG : 448317 222 : laMet : 222 ||||| laMet 448318 : CTATG : 448322 vulgar: CbirOr468 143 222 . KQ414815.1 448088 448322 + 108 M 21 63 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448089 448322 108 + . gene_id 3 ; sequence CbirOr468 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448089 448322 . + . KQ414815.1 exonerate:protein2genome:local exon 448089 448322 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 448089 448322 108 + . alignment_id 3 ; Query CbirOr468 ; Align 448089 144 63 ; Align 448152 166 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr468 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 164 -> 216 Target range: 478638 -> 478794 165 : ThrGluTyrPheValAspGlnGluArgTyrPheTyrLeuIleLeuLeuHisIleAsnT : 184 ||||||||||||:!!|||:::::::::|||||| ...|||::: |||:!: !! ThrGluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValTyrL 478639 : ACGGAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGTACC : 478696 185 : hrAlaThrTyrIleGlyMetIleValAlaValAlaThrGlyThrValLeuIleGlyCy : 203 !:!! ! !!: ! ! !||| !|||||||||! !:!! !:!!||| !!! euSerLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMetTr 478697 : TGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTATGTG : 478753 204 : sIleIleHisAlaCysGlyLeuPheSerIleValSerTyr : 216 !!::!:|||.!! !||||||!:!!:!|||:!!!!!||| pMetValHisThrIleGlyLeuTyrAsnIleIleArgTyr 478754 : GATGGTGCATACTATCGGCTTGTATAATATCATAAGGTAT : 478794 vulgar: CbirOr468 164 216 . KQ414815.1 478638 478794 + 105 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478639 478794 105 + . gene_id 4 ; sequence CbirOr468 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478639 478794 . + . KQ414815.1 exonerate:protein2genome:local exon 478639 478794 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478639 478794 105 + . alignment_id 4 ; Query CbirOr468 ; Align 478639 165 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr466PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 106 -> 201 Target range: 457129 -> 457411 107 : LysArgLeuThrThrLysValIleValLeuThrMetCysGlyThrPheCysAsnSerI : 126 |||::: ::!! !:!!! !|||! !||| ||||||.!!.!. !! !!!!! LysLysLysProSerMetIleThrValSerThrTyrCysGlyAlaLeuValIleThrT 457130 : aaaaaaaaaccttcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCA : 457187 127 : leIleIleTyrSerProTyrIleLeuAspIleValMetProLysAsnGluSerTyrAl : 145 :!: ! !! !||| :!!||||||||||||:!:||| !||||||||| ! ! hrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgPr 457188 : CGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCC : 457244 146 : aIleHisMetMetGluMetValThrAsnTyrPhePheValSerGluLysTyrTyrPhe : 164 ! !.!.:!: :!:..!.!!.!.|||||| !!! !! !:!!|||||| ! oCysGluLeuTyr---LeuThrAlaGluTyrPheValAspMetLysLysTyrMetHis 457245 : CTGTGAGTTATAC---CTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCAT : 457298 165 : LeuIleLeuValHisLeuAsnAlaAlaCysThrThrGluLeuIleValLeuGlyAlaT : 184 ! !|||:!!!.!|||:!!! !.!!..! !! !! ! !! !..!||| !|||! TyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaA 457299 : TATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTA : 457358 185 : hrThrThrMetMetMetAlaIlePheLysHisValCysGlyMetPheAlaIle : 201 .! !:!!:!::!:!!:.!!! ! ! !||||||||||||:!!||| !:!! snGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457359 : ACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr466PSE 106 201 . KQ414815.1 457129 457411 + 113 M 43 129 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457130 457411 113 + . gene_id 1 ; sequence CbirOr466PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457130 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457130 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457130 457411 113 + . alignment_id 1 ; Query CbirOr466PSE ; Align 457130 107 129 ; Align 457259 151 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr467IC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 83 -> 218 Target range: 475500 -> 476091 84 : GluValLeuThrLeuIleLeuLeuCysGlyIlePheValGlyValPheAsnAlaPheL : 103 ...:::::!|||:!!:!::!!! ! !||||||..! !:!!!!. ! !|||! AsnIleValThrValLeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheS 475501 : aatattgtTACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCT : 475558 104 : euProAsnIleLeuAspAlaAlaLeuSerThrAsnLysSerGlnSerProSerThrLe : 122 ! !!!!.|||||||||:!! !||| !! !|||:!!|||!:: |||||| !! erSerLysIleLeuAspSerLeuLeuProLeuAsnGluSerArg---ProSerTrpSe 475559 : CGTCTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGT---CCTAGCTGGTC : 475612 123 : uHisIleMetThrGluTyrPheIleAspGlnLysLysTyrPheTyrLeuIleMetMet : 141 !! ||| ||||||||||||::::!!:!!|||||||||||||||! !:!!!!: rLeuIleArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIle 475613 : TCTGAtacgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATC : 475669 142 : HisLysGluAlaAlaSerCysIleGlyValThrAlaIleValAlaThrGlyThrMetT : 161 :!!:!! !.!.!!! ! !:!: !! !|||.!! !|||||||||! !.!!!!: TyrGlnThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIleP 475670 : TATCAGACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATAT : 475729 162 : hrMetLeuTyrPheGlnHisAlaCysGlyMetPheMetIleAla{Se} >>>> Tar : 176 !! :!!!::!!.||||||..! ...:::||| |||...{||} heThrMetTrpLeuGlnHisCysIleSerLeuPheGluIleVal{Se}++ 475730 : TTACCATGTGGTTGCAACATTGCATaagtttatttgaaattgtt{ag}gt........ : 475778 177 : get Intron 1 >>>> {r}TyrArgIleGluGlnAlaThrSerSerIleAsnLeu : 188 183 bp {|}||||||||||||:!! !! !! !..! !||| ! ++{r}TyrArgIleGluLysLeuIleIleGlnCysAsnAla 475779 : .................ag{t}TATCGTATTGAAAAACTGATTATACAGTGCAACGCT : 475993 189 : SerAsp<-><->SerAsnLysArgAsnLysAspLeuThrCysMetGlyIleIleTyrA : 206 ..! |||.!.|||||| ! !!:! ! ! ! !:!!||| !!| GluProTyrValSerGlnLysArgLeuHisArgAsnSerArgLysIleLeuIleAsnA 475994 : GAGCCGTACGTTTCGCAAAAACGTTTGCACAGAAACAGCAGGAAGATTCTAATTAATG : 476053 207 : laIleAspMetHisArgLysAlaMetArgPheValAsn : 218 ||:!:! !|||||||||!:!!.!:!:!:!!!.|||::! laValValMetHisArgArgValLeuGlnLeuValSer 476054 : CTGTGGTTATGCACAGAAGAGTATTACAGTTGGTATCT : 476091 vulgar: CbirOr467IC 83 218 . KQ414815.1 475500 476091 + 143 M 34 102 G 1 0 M 57 171 S 0 2 5 0 2 I 0 179 3 0 2 S 1 1 M 14 42 G 0 6 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475501 476091 143 + . gene_id 1 ; sequence CbirOr467IC ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 475501 475775 . + . KQ414815.1 exonerate:protein2genome:local exon 475501 475775 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local splice5 475776 475777 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 475776 475958 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 475957 475958 . + . intron_id 0 ; splice_site "ag" KQ414815.1 exonerate:protein2genome:local cds 475959 476091 . + . KQ414815.1 exonerate:protein2genome:local exon 475959 476091 . + . insertions 6 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475501 476091 143 + . alignment_id 1 ; Query CbirOr467IC ; Align 475501 84 102 ; Align 475603 119 171 ; Align 475960 177 42 ; Align 476008 191 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr467IC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 81 -> 174 Target range: 485650 -> 485926 82 : AsnThrGluValLeuThrLeuIleLeuLeuCysGlyIlePheValGlyValPheAsnA : 101 !..!.!...:!!:!!.!!:!!|||:!! ! ..!:!!.!!||| !:!!.!!..! ThrAsnSerIleIleAlaValIleIleGlyProSerLeuLeuValLeuIleLeuGlyI 485651 : ACGAACAGTATTATTGCAGTAATTATCGGTCCATCGTTACTTGTGCTGATTCTTGGTA : 485708 102 : laPheLeuProAsnIleLeuAspAlaAlaLeuSerThrAsnLysSerGlnSerProSe : 120 !||| ! !!:!||||||||| ! !:!! !! !||| ! !!!!:: ||| ! lePheAsnAsnSerIleLeuAspIleLeuIleProLeuAsnTyrThrArg---ProAr 485709 : TATTTAACAACAGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGT---CCGCG : 485762 121 : rThrLeuHisIleMetThrGluTyrPheIleAspGlnLysLysTyrPheTyrLeuIle : 139 !|||:!!! !|||! :!!|||:!!|||:!!||||||:!!||||||||||||! !||| gThrIleProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIle 485763 : GACGATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATT : 485819 140 : MetMetHisLysGluAlaAlaSerCysIleGlyValThrAlaIleValAlaThrGlyT : 159 ||| ! ! ! ! !||||||!.!! !!.!:!!:!!::!||| AlaAlaHisValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluI 485820 : GCAGCACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaa : 485879 160 : hrMetThrMetLeuTyrPheGlnHisAlaCysGlyMetPheMetIle : 174 ::: ||| ! .!.||||||.!!||||||:!!!:!! ||| leLeuIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIle 485880 : tattaattatggCGATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr467IC 81 174 . KQ414815.1 485650 485926 + 130 M 36 108 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485651 485926 130 + . gene_id 2 ; sequence CbirOr467IC ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485651 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485651 485926 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 485651 485926 130 + . alignment_id 2 ; Query CbirOr467IC ; Align 485651 82 108 ; Align 485759 119 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr467IC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 125 -> 187 Target range: 478638 -> 478824 126 : ThrGluTyrPheIleAspGlnLysLysTyrPheTyrLeuIleMetMetHisLysGluA : 145 ||||||||||||||||||:::|||||||||||| ...|||::: ||| ! ! ThrGluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValTyrL 478639 : ACGGAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGTACC : 478696 146 : laAlaSerCysIleGlyValThrAlaIleValAlaThrGlyThrMetThrMetLeuTy : 164 !:!!! ! !!: !!.!|||!.! !|||||||||! !:!! ..!!!::!!!: euSerLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMetTr 478697 : TGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTATGTG : 478753 165 : rPheGlnHisAlaCysGlyMetPheMetIleAlaSerTyrArgIleGluGlnAlaThr : 183 :.!. !|||.!! !|||:!!!:!! ||| !!!!|||!.! :!!::! !! ! pMetValHisThrIleGlyLeuTyrAsnIleIleArgTyrAsnGlnGlnArgLeuIle 478754 : GATGGTGCATACTATCGGCTTGTATAATATCATAAGGTATAATCAGCAAAGATTGATC : 478810 184 : SerSerIleAsn : 187 ..! !!|||:!! AspProIleHis 478811 : GATCCGATACAC : 478824 vulgar: CbirOr467IC 125 187 . KQ414815.1 478638 478824 + 103 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478639 478824 103 + . gene_id 3 ; sequence CbirOr467IC ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478639 478824 . + . KQ414815.1 exonerate:protein2genome:local exon 478639 478824 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478639 478824 103 + . alignment_id 3 ; Query CbirOr467IC ; Align 478639 126 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr471NTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 75 -> 166 Target range: 457141 -> 457411 76 : AlaArgLeuThrIlePheAlaLeuCysGlyIleLeuSerThrCysIleMetIleTyrS : 95 ::!! !:!!|||:!!! !.!!! !|||||| !||| !! ! !! :!! ! !! SerMetIleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuP 457142 : tcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCT : 457199 96 : erProHisIleLeuAspIleValMetProLysAsnGluSerTyrAlaIleHisThrMe : 114 !||| :!!||||||||||||:!:||| !||||||||| ! !! !.!. :! heProIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGlu---Le 457200 : TTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAG---TT : 457253 115 : tGluMetValThrLysTyrPheValValSerGluLysTyrTyrPheLeuIleLeuVal : 133 : ! :!:..!.!!:!!|||||||||! !! !:!!|||||| !! !|||:!!!.! uTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAla 457254 : ATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCG : 457310 134 : HisThrAsnAlaAlaCysSerValGlyLeuIleValLeuValGlyThrGlyThrMetM : 153 |||! !! !.!!..! !:!!!.! !! !..!|||..!!.!!.!! !:!!:!:: HisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuL 457311 : CACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTAC : 457370 154 : etIleSerTyrIleGluHisValCysGlyMetPheGluIle : 166 !:|||!!! !!:!! !||||||||||||:!!|||:!!:!! euIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457371 : TTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr471NTE 75 166 . KQ414815.1 457141 457411 + 121 M 37 111 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457142 457411 121 + . gene_id 1 ; sequence CbirOr471NTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457142 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457142 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457142 457411 121 + . alignment_id 1 ; Query CbirOr471NTE ; Align 457142 76 111 ; Align 457253 114 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr471NTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 77 -> 175 Target range: 448031 -> 448322 78 : LeuThrIlePheAlaLeuCysGlyIleLeuSerThrCysIleMetIleTyrSerProH : 97 ::::::::: ! ! !! ..!:!!:!!||| ! !:!::!: !:! ! !| IleSerValValPheAlaLeuSerLeuIleSerPheThrLeuValGluPheValValH 448032 : atttcagtGGTGTTTGCCTTGTCTTTAATTAGCTTTACCTTGGTTGAGTTCGTGGTAc : 448089 98 : isIleLeuAspIleValMetProLysAsnGluSerTyrAlaIleHisThrMetGluMe : 116 ||...|||||||||:::||||||! !|||! !||| .!! ||| !:!: .! isPheLeuAspIleLeuMetProMetAsnValSer---ThrArgHisGluLeuProPh 448090 : attttctcgatattttaATGCCAATGAACGTATCT---ACACGGCACGAGCTACCCTT : 448143 117 : tValThrLysTyrPheValValSerGluLysTyrTyrPheLeuIleLeuValHisThr : 135 .:!!! !:!!! !||| !! !..!!!:|||!:!!:! !! !||||||||| ! ! eLeuIleGlnCysPheCysAspGlnAspLysPhePheHisTyrIleLeuValPheLeu 448144 : CCTAATTCAATGTTTCTGTGATCAAGATAAATTCTTCCACTATATATTAGTTTTCTTG : 448200 136 : AsnAlaAlaCysSerValGlyLeuIleValLeuValGlyThrGlyThrMetMetIleS : 155 ! !!.! ! !! !:!!||| !! !|||:!!:!!!.!||| !|||! :!:! IleValLeuThrIleLeuGlyGlySerValValLeuAlaThrThrThrThrTyrLeuI 448201 : ATCGTTCTCACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAACGACTTACTTGA : 448260 156 : erTyrIleGluHisValCysGlyMetPheGluIleAlaSerTyrArgIleGluGlnAl : 174 !!:!! !:!!||| !||||||:!!|||:!!||||||.!!!! ..!||| ! || lePheSerGlnHisCysCysGlyLeuPheLysIleAlaGly***GluIleMetThrAl 448261 : TATTCAGTCAACATTGTTGTGGATTGTTCAAAATTGCAGGGTAAGAAATTATGACTGC : 448317 175 : aMet : 175 |||| aMet 448318 : TATG : 448322 vulgar: CbirOr471NTE 77 175 . KQ414815.1 448031 448322 + 110 M 31 93 G 1 0 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448032 448322 110 + . gene_id 2 ; sequence CbirOr471NTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448032 448322 . + . KQ414815.1 exonerate:protein2genome:local exon 448032 448322 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 448032 448322 110 + . alignment_id 2 ; Query CbirOr471NTE ; Align 448032 78 93 ; Align 448125 110 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr459 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 117 -> 214 Target range: 457123 -> 457411 118 : SerGlyLysHisPheThrThrIleIleIleIleLeuLeuValCysAlaLeuCysGlyA : 137 ::: ||| ::!!!:|||! !:!!! ! ! !|||!.! ! ! ! AsnAspLysLysLysProSerMetIleThrValSerThrTyrCysGlyAlaLeuValI 457124 : aatgataaaaaaaaaccttcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTA : 457181 138 : spPheValIleValTyrTrpProTyrIleLeuAspIleValValProLysAsnGluSe : 156 ! !..!:!: ! !!::||| :!!|||||||||||||||||| !|||||||| leThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSe 457182 : TTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATC : 457238 157 : rHisThrSerProMetIleGlnPheLeuSerGluTyrPheHisValSerGluLysTyr : 175 |!.! !!!!! ! :!! ! .!! !:!!||||||||| !! !! !:!!|||||| rArgProCysGlu---LeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyr 457239 : ACGCCCCTGTGAG---TTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTAT : 457292 176 : GlnPheLeuValLeuValHisPheAsnThrAlaMetThrAlaGlySerIleValPheV : 195 ..! !! !:!!:!!!.!|||.!!! !|||..!:!: ! !!.!:!!! !..!!!.. MetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuT 457293 : ATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAA : 457352 196 : alGlyThrThrThrMetLeuPheSerTyrPheLeuHisIleCysGlyMetPheGluIl : 214 .!!.!!.! !:!!:!:|||.!.!!! !! ! ||||||:!!||||||:!!|||:!!:! hrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLe 457353 : CAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCT : 457409 215 : e : 214 ! u 457410 : T : 457411 vulgar: CbirOr459 117 214 . KQ414815.1 457123 457411 + 115 M 43 129 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457124 457411 115 + . gene_id 1 ; sequence CbirOr459 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457124 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457124 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457124 457411 115 + . alignment_id 1 ; Query CbirOr459 ; Align 457124 118 129 ; Align 457253 162 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr459 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 334 -> 380 Target range: 441705 -> 441843 335 : TyrAsnValSerTrpTyrLeuAlaProLeuHisIleGlnLysLeuIleLeuPheLeuL : 354 |||||| !!!!||||||! !!.!|||||| ! |||||||||:!!||||||:!!: TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 355 : euGlnArgArgThrLysSerCysThrLeuSerValGlyGlyLeuIleThrAlaSerPh : 373 !!..!!:!!!!|||! !!|||! !:!!!:!:!!..!|||:!!.!!.!! !!!!!!: etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 374 : eGluCysPheAlaThrLeuVal : 380 !:!! !!|||:!!:!!:!!:!! rLysGlyPheSerSerValIle 441821 : CAAAGGTTTTTCCTCGGTAATT : 441843 vulgar: CbirOr459 334 380 . KQ414815.1 441705 441843 + 101 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441843 101 + . gene_id 2 ; sequence CbirOr459 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441706 441843 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441843 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441843 101 + . alignment_id 2 ; Query CbirOr459 ; Align 441706 335 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr459 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 334 -> 380 Target range: 445817 -> 445955 335 : TyrAsnValSerTrpTyrLeuAlaProLeuHisIleGlnLysLeuIleLeuPheLeuL : 354 |||||| !!!!||||||! !!.!|||||| ! |||||||||:!!||||||:!!: TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 355 : euGlnArgArgThrLysSerCysThrLeuSerValGlyGlyLeuIleThrAlaSerPh : 373 !!..!!:!!!!|||! !!|||! !:!!!:!:!!..!|||:!!.!!.!! !!!!!!: etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 374 : eGluCysPheAlaThrLeuVal : 380 !:!! !!|||:!!:!!:!!:!! rLysGlyPheSerSerValIle 445933 : CAAAGGTTTTTCCTCGGTAATT : 445955 vulgar: CbirOr459 334 380 . KQ414815.1 445817 445955 + 101 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 445955 101 + . gene_id 3 ; sequence CbirOr459 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445818 445955 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445955 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 445955 101 + . alignment_id 3 ; Query CbirOr459 ; Align 445818 335 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr465 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 343 -> 402 Target range: 458543 -> 458798 344 : TyrAsnIleArgTrpTyrValAlaProValArgValGlnArgLeuIleLeuPheLeuL : 363 ||| |||! !|||||| !||||||:!!|||:!!|||!:!! !:!!||||||:!!! TyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleS 458544 : TACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATAT : 458601 364 : euGlnLysGlyThrLysProTyrArgMetLysPheGlyGlyLeuTyrIleThrSerLe : 382 !:!!:::.!!! !!:! ! ! !:!! .!. !|||:!! !|||.!.|||.. erGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPh 458602 : CAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatcctt : 458658 383 : uGluAsnPheAlaSer >>>> Target Intron 1 >>>> ValLeuThrAlaS : 392 .||| ||||||:!! 78 bp !!:!!! !|||: eGluPhePheAlaThr++ ++PheMetLysAlaA 458659 : cgaatttttcgccaCGgt.........................agTTCATGAAAGCAG : 458766 393 : erIleSerTyrPheThrValIleTyrSerIle : 402 !!!!:||||||! !||||||:!!||||||||| laMetSerTyrCysThrValLeuTyrSerIle 458767 : CGATGTCCTATTGCACGGTATTATATTCCATC : 458798 vulgar: CbirOr465 343 402 . KQ414815.1 458543 458798 + 111 M 44 132 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458544 458798 111 + . gene_id 1 ; sequence CbirOr465 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 458544 458675 . + . KQ414815.1 exonerate:protein2genome:local exon 458544 458675 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 458676 458677 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 458676 458753 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 458752 458753 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458754 458798 . + . KQ414815.1 exonerate:protein2genome:local exon 458754 458798 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458544 458798 111 + . alignment_id 1 ; Query CbirOr465 ; Align 458544 344 132 ; Align 458754 388 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr453PI Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 292 -> 354 Target range: 128560 -> 128300 293 : AlaTyrAsnValGlnTrpTyrMetAlaProIleArgValGlnLysLeuIleLeuPheL : 312 ::!||| !!.!:!!||||||! ||||||:::::: ||||||::::!!||||||| SerTyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheL 128560 : AGCTATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCC : 128503 313 : euLeuGlnArgSerCysLysMetTyrGlyLeuLysThrGlyGlyLeuPheIleAlaSe : 331 ||:!!!!.|||! ! :!! !! ! !!|||||| ! !..!||| !! !|||.! euMetHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGl 128502 : TCATGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGG : 128446 332 : rLeuGluGlyPheAlaSer >>>> Target Intron 1 >>>> LeuCysThrA : 341 ! !||| !!:!|||!!! 74 bp :!! !. yAsnGluLeuTyrAlaThr++ ++MetValGlnT 128445 : TAACGAGTTGTACGCTACCgt.........................agaTGGTGCAGA : 128342 342 : laSerValSerTyrPheThrValIleTyrSerValGlnLys : 354 !!.!! !!|||||||||||||||:!!||||||:!!|||:!! hrGlyPheSerTyrPheThrValLeuTyrSerLeuGlnGlu 128341 : CTGGTTTCTCCTACTTTACGGTTCTCTACTCGTTGCAAGAA : 128301 vulgar: CbirOr453PI 292 354 . KQ414817.1 128560 128300 - 113 M 45 135 5 0 2 I 0 70 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128301 128560 113 - . gene_id 1 ; sequence CbirOr453PI ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128560 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128560 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128301 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128301 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128301 128560 113 - . alignment_id 1 ; Query CbirOr453PI ; Align 128561 293 135 ; Align 128352 338 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr470 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 124 -> 213 Target range: 130430 -> 130163 125 : IleMetValPheLeuCysIleCysMetValLeuPheValPheLeuGluIleTrpProI : 144 ||| ||||||! !! !:!: :!::!! !||||||||||||:!!||| ||| IleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuProG 130430 : ATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGC : 130373 145 : leMetLeuAspPheValValProLeuAsnGluSerArgProArgLysMetHisValVa : 163 !!!:|||! !.!.:!! !||||||!.!|||! !!.! !!!.!|||:!:! !||| lnIleLeuGlyIleIleSerProLeuThrGluIleAsnThrAsnLysLeuLeuValAr 130372 : AAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAACAAATTACTCGTTCG : 130316 164 : lAlaGluTyrPheIleAspArgGluLysTyrPheProPheMetLeuLeuHisGluIle : 182 !.!!|||||||||:!!||| !:!! ! |||.!! !.!.!!: !:!!|||! !! ! gThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAlaThr 130315 : AACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCGACT : 130259 183 : ValAlaCysLeuValGlyGlyValThrLeuLeuSerThrGlyThrIleCysMetIleT : 202 :!!||| :!! !.!!! !..!! !! !:!!|||!:!! !! ::: |||: IleAlaIleMetCysSerValThrMetGlnIleSerSerAspIleLeuAsnAsnIleP 130258 : ATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaataacatat : 130199 203 : yrAlaSerHisValCysGlyMetLeuLysIleVal : 213 :: !! !|||:!! !!||||||!!!:!!:!!:!! heMetMetHisIleSerGlyMetPheGluValIle 130198 : ttatGATGCACATCAGTGGAATGTTCGAGGTAATT : 130164 vulgar: CbirOr470 124 213 . KQ414817.1 130430 130163 - 132 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130164 130430 132 - . gene_id 1 ; sequence CbirOr470 ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130164 130430 . - . KQ414817.1 exonerate:protein2genome:local exon 130164 130430 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 130164 130430 132 - . alignment_id 1 ; Query CbirOr470 ; Align 130431 125 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr470 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 335 -> 391 Target range: 128545 -> 128303 336 : TrpTyrValAlaProGlnSerSerGlnLysIleLeuLeuPheLeuMetHisArgThrM : 355 |||||| !|||||| ...|||||||||:::||||||||||||||||||||| !| TrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheLeuMetHisArgPheM 128545 : TGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCCTCATGCACAGATTCA : 128488 356 : etLysSerValLysProThrIleGlyAsnLeuPheValAlaSerLeuGluGlyPheAl : 374 ||:!! !! !!:!! !! !:!: !::!||| !!!.!|||.!! !||| !!:!|| etGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGlyAsnGluLeuTyrAl 128487 : TGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGGTAACGAGTTGTACGC : 128431 375 : aThr >>>> Target Intron 1 >>>> LeuSerThrThrSerLeuSerTyrP : 384 |||| 74 bp :!! ! !|||.!!!!!||||||| aThr++ ++MetValGlnThrGlyPheSerTyrP 128430 : TACCgt.........................agaTGGTGCAGACTGGTTTCTCCTACT : 128327 385 : heThrMetLeuTyrSerLeuGln : 391 |||||:!:||||||||||||||| heThrValLeuTyrSerLeuGln 128326 : TTACGGTTCTCTACTCGTTGCAA : 128304 vulgar: CbirOr470 335 391 . KQ414817.1 128545 128303 - 131 M 40 120 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128304 128545 131 - . gene_id 2 ; sequence CbirOr470 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128545 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128545 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128304 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128304 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128304 128545 131 - . alignment_id 2 ; Query CbirOr470 ; Align 128546 336 120 ; Align 128352 376 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr456 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 319 -> 390 Target range: 128590 -> 128303 320 : ThrGluHisTyrAsnAsnMetPheSerSerAlaTyrSerIleGluTrpTyrArgAlaP : 339 |||... !!:!::!! ! !!.!!!! !::!|||!!! !:!!||||||!:!|||| ThrSerCysPheSerIleProLeuThrPheSerTyrCysAlaLysTrpTyrLysAlaP 128590 : ACATCTTGTTTCTCTATTCCTTTAACATTTAGCTATTGTGCAAAATGGTACAAAGCCC : 128533 340 : roIleArgValGlnLysLeuIleLeuPheLeuLeuGlnArgSerCysLysMetHisGl : 358 ||:::::: ||||||::::!!|||||||||:!!!!.|||! ! :!! ! ! ! roValLysSerGlnLysMetLeuLeuPheLeuMetHisArgPheMetGluProCysAr 128532 : CAGtaaaatctcaaaaaatgCTACTGTTCCTCATGCACAGATTCATGGAACCGTGCAG : 128476 359 : yIleLysIleGlyGlyLeuPheThrAlaSerLeuGluGlyPheAlaSer >>>> Ta : 375 !:!!|||:!: !..!||| !!.!!|||.!! !||| !!:!|||!!! gLeuLysLeuLysSerLeuValAlaAlaGlyAsnGluLeuTyrAlaThr++ 128475 : GCTAAAACTGAAATCCTTAGTTGCCGCGGGTAACGAGTTGTACGCTACCgt....... : 128423 376 : rget Intron 1 >>>> LeuSerThrAlaSerValSerTyrPheThrValIleTy : 387 74 bp :!! ! !.!!.!! !!|||||||||||||||:!!|| ++MetValGlnThrGlyPheSerTyrPheThrValLeuTy 128422 : ..................agaTGGTGCAGACTGGTTTCTCCTACTTTACGGTTCTCTA : 128315 388 : rSerMetGln : 390 ||||:!!||| rSerLeuGln 128314 : CTCGTTGCAA : 128304 vulgar: CbirOr456 319 390 . KQ414817.1 128590 128303 - 117 M 55 165 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128304 128590 117 - . gene_id 1 ; sequence CbirOr456 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128590 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128590 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128304 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128304 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128304 128590 117 - . alignment_id 1 ; Query CbirOr456 ; Align 128591 320 165 ; Align 128352 375 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr455 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 320 -> 389 Target range: 128581 -> 128300 321 : TyrAsnTyrMetPheSerThrAlaTyrAsnValGlnTrpTyrMetAlaProIleArgV : 340 !:!::! ! !!.!!! !::!||| !!.!:!!||||||! ||||||:::::: PheSerIleProLeuThrPheSerTyrCysAlaLysTrpTyrLysAlaProValLysS 128581 : TTCTCTATTCCTTTAACATTTAGCTATTGTGCAAAATGGTACAAAGCCCCAGtaaaat : 128524 341 : alGlnLysLeuIleLeuPheLeuLeuGlnArgSerCysLysMetTyrGlyLeuLysTh : 359 ||||||::::!!|||||||||:!!!!.|||! ! :!! !! ! !!|||||| erGlnLysMetLeuLeuPheLeuMetHisArgPheMetGluProCysArgLeuLysLe 128523 : ctcaaaaaatgCTACTGTTCCTCATGCACAGATTCATGGAACCGTGCAGGCTAAAACT : 128467 360 : rGlyGlyLeuPheIleAlaSerLeuGluGlyPheAlaSer >>>> Target Intr : 373 ! !..!||| !! !|||.!! !||| !!:!|||!!! 74 bp uLysSerLeuValAlaAlaGlyAsnGluLeuTyrAlaThr++ 128466 : GAAATCCTTAGTTGCCGCGGGTAACGAGTTGTACGCTACCgt................ : 128423 374 : on 1 >>>> LeuSerThrAlaSerIleSerTyrPheThrValIleTyrSerValGl : 388 :!! ! !.!!.!!.!!|||||||||||||||:!!||||||:!!|| ++MetValGlnThrGlyPheSerTyrPheThrValLeuTyrSerLeuGl 128422 : .........agaTGGTGCAGACTGGTTTCTCCTACTTTACGGTTCTCTACTCGTTGCA : 128306 389 : nLys : 389 |:!! nGlu 128305 : AGAA : 128301 vulgar: CbirOr455 320 389 . KQ414817.1 128581 128300 - 113 M 52 156 5 0 2 I 0 70 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128301 128581 113 - . gene_id 1 ; sequence CbirOr455 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128581 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128581 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128301 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128301 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128301 128581 113 - . alignment_id 1 ; Query CbirOr455 ; Align 128582 321 156 ; Align 128352 373 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr467IC Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 97 -> 174 Target range: 130394 -> 130166 98 : ValPheAsnAlaPheLeuProAsnIleLeuAspAlaAlaLeuSerThrAsnLysSerG : 117 |||||| !.!!||||||.!.|||||| !.! !:!!||| !! ! ..! ValPheLeuGlnIleLeuProGlnIleLeu---GlyIleIleSerProLeuThrGluI 130394 : GTTTTCTTGCAAATTCTCCCGCAAATTTTA---GGCATAATTTCACCTCTAACCGAGA : 130340 118 : lnSerProSerThrLeuHisIleMetThrGluTyrPheIleAspGlnLysLysTyrPh : 136 !:! !!!:!! !|||! !:!! ||||||||||||:!!||| ! ||| ! |||.! leAsnThrAsnLysLeuLeuValArgThrGluTyrPheValAspTyrLysAspTyrIl 130339 : TCAATACTAACAAATTACTCGTTCGAACCGAATACTTTGTCGACTACAAAGATTACAT : 130283 137 : eTyrLeuIleMetMetHisLysGluAlaAlaSerCysIleGlyValThrAlaIleVal : 155 !|||||||||! !!!:||| ! !|||! ! !.!!|||||| ! !:!! eTyrLeuIleThrIleHisAlaThrIleAlaIleMetCysSerValThrMetGlnIle 130282 : TTATCTAATCACGATCCACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATT : 130226 156 : AlaThrGlyThrMetThrMetLeuTyrPheGlnHisAlaCysGlyMetPheMetIle : 174 ::!!:!! !! :::... ::::::.....!||| ! !!||||||||| !:!! SerSerAspIleLeuAsnAsnIlePheMetMetHisIleSerGlyMetPheGluVal 130225 : AGCAGCGATAttttgaataacatatttatGATGCACATCAGTGGAATGTTCGAGGTA : 130167 vulgar: CbirOr467IC 97 174 . KQ414817.1 130394 130166 - 106 M 10 30 G 1 0 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130167 130394 106 - . gene_id 1 ; sequence CbirOr467IC ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130167 130394 . - . KQ414817.1 exonerate:protein2genome:local exon 130167 130394 . - . insertions 0 ; deletions 1 KQ414817.1 exonerate:protein2genome:local similarity 130167 130394 106 - . alignment_id 1 ; Query CbirOr467IC ; Align 130395 98 30 ; Align 130365 109 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr454INT Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 290 -> 359 Target range: 128581 -> 128300 291 : TyrAsnTyrMetPheSerThrAlaTyrAsnValGlnTrpTyrMetAlaProIleArgV : 310 !:!::! ! !!.!!! !::!||| !!.!:!!||||||! ||||||:::::: PheSerIleProLeuThrPheSerTyrCysAlaLysTrpTyrLysAlaProValLysS 128581 : TTCTCTATTCCTTTAACATTTAGCTATTGTGCAAAATGGTACAAAGCCCCAGtaaaat : 128524 311 : alGlnLysLeuIleLeuPheLeuLeuGlnArgSerCysLysMetPheGlyIleLysTh : 329 ||||||::::!!|||||||||:!!!!.|||! ! :!! !! ! !!:!!||| erGlnLysMetLeuLeuPheLeuMetHisArgPheMetGluProCysArgLeuLysLe 128523 : ctcaaaaaatgCTACTGTTCCTCATGCACAGATTCATGGAACCGTGCAGGCTAAAACT : 128467 330 : rGlyGlyLeuPheMetAlaSerLeuGluCysPheAlaSer >>>> Target Intr : 343 ! !..!||| !! |||.!! !|||! !:!|||!!! 74 bp uLysSerLeuValAlaAlaGlyAsnGluLeuTyrAlaThr++ 128466 : GAAATCCTTAGTTGCCGCGGGTAACGAGTTGTACGCTACCgt................ : 128423 344 : on 1 >>>> IleSerThrAlaSerValSerTyrPheThrValLeuTyrSerValGl : 358 :!: ! !.!!.!! !!||||||||||||||||||||||||:!!|| ++MetValGlnThrGlyPheSerTyrPheThrValLeuTyrSerLeuGl 128422 : .........agaTGGTGCAGACTGGTTTCTCCTACTTTACGGTTCTCTACTCGTTGCA : 128306 359 : nLys : 359 |:!! nGlu 128305 : AGAA : 128301 vulgar: CbirOr454INT 290 359 . KQ414817.1 128581 128300 - 114 M 52 156 5 0 2 I 0 70 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128301 128581 114 - . gene_id 1 ; sequence CbirOr454INT ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128581 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128581 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128301 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128301 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128301 128581 114 - . alignment_id 1 ; Query CbirOr454INT ; Align 128582 291 156 ; Align 128352 343 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr468 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 137 -> 214 Target range: 130391 -> 130163 138 : PheLeuSerIleTrpProGlnIleLeuSerThrIleLeuProIleAsnValSerGlnT : 157 ||||||..!||| ||||||||||||.!!! !|||! !|||:!!!.!! !! !.!.| PheLeuGlnIleLeuProGlnIleLeuGlyIleIleSerProLeuThrGluIleAsnT 130391 : TTCTTGCAAATTCTCCCGCAAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATA : 130334 158 : hrGlnArgIleMetTyrValMetThrGluTyrPheValAspGlnGluArgTyrPheTy : 176 ||.!.!:!:!!:!: ||| |||||||||||||||||| ! :!! !|||.!!|| hrAsnLysLeuLeu---ValArgThrGluTyrPheValAspTyrLysAspTyrIleTy 130333 : CTAACAAATTACTC---GTTCGAACCGAATACTTTGTCGACTACAAAGATTACATTTA : 130280 177 : rLeuIleLeuLeuHisIleAsnThrAlaThrTyrIleGlyMetIleValAlaValAla : 195 ||||||| !:!!||| !.!! !|||! ! !.!!:!!! !:!! !:!!::! rLeuIleThrIleHisAlaThrIleAlaIleMetCysSerValThrMetGlnIleSer 130279 : TCTAATCACGATCCACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGC : 130223 196 : ThrGlyThrValLeuIleGlyCysIleIleHisAlaCysGlyLeuPheSerIleVal : 214 !:!! !! ::: :::!!:||| ! !!|||:!!|||..!:!!:!! SerAspIleLeuAsnAsnIlePheMetMetHisIleSerGlyMetPheGluValIle 130222 : AGCGATAttttgaataacatatttatGATGCACATCAGTGGAATGTTCGAGGTAATT : 130164 vulgar: CbirOr468 137 214 . KQ414817.1 130391 130163 - 115 M 24 72 G 1 0 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130164 130391 115 - . gene_id 1 ; sequence CbirOr468 ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130164 130391 . - . KQ414817.1 exonerate:protein2genome:local exon 130164 130391 . - . insertions 0 ; deletions 1 KQ414817.1 exonerate:protein2genome:local similarity 130164 130391 115 - . alignment_id 1 ; Query CbirOr468 ; Align 130392 138 72 ; Align 130320 163 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr450 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 329 -> 401 Target range: 128590 -> 128300 330 : ThrAspHisTyrSerTyrIlePheSerThrAlaTyrAsnValArgTrpTyrIleAlaS : 349 |||..! !!:!||| ! !!!.!!! !::!||| !!.!!:!||||||! !||| ThrSerCysPheSerIleProLeuThrPheSerTyrCysAlaLysTrpTyrLysAlaP 128590 : ACATCTTGTTTCTCTATTCCTTTAACATTTAGCTATTGTGCAAAATGGTACAAAGCCC : 128533 350 : erValArgValGlnLysLeuIleLeuPheLeuLeuGlnArgSerAlaLysProTyrAs : 368 !!|||::: ||||||::::!!|||||||||:!!!!.|||! ! !:!!|||! ! roValLysSerGlnLysMetLeuLeuPheLeuMetHisArgPheMetGluProCysAr 128532 : CAGtaaaatctcaaaaaatgCTACTGTTCCTCATGCACAGATTCATGGAACCGTGCAG : 128476 369 : pIleLysPheGlyGlyLeuTyrThrAlaSerLeuGluAsnPheAlaThr >>>> Ta : 385 :!!|||.!. !..!||| !.!!|||.!! !||| !:!|||||| gLeuLysLeuLysSerLeuValAlaAlaGlyAsnGluLeuTyrAlaThr++ 128475 : GCTAAAACTGAAATCCTTAGTTGCCGCGGGTAACGAGTTGTACGCTACCgt....... : 128423 386 : rget Intron 1 >>>> LeuSerThrAlaSerIleSerTyrPheThrValIleTy : 397 74 bp :!! ! !.!!.!!.!!|||||||||||||||:!!|| ++MetValGlnThrGlyPheSerTyrPheThrValLeuTy 128422 : ..................agaTGGTGCAGACTGGTTTCTCCTACTTTACGGTTCTCTA : 128315 398 : rSerIleGlnLys : 401 ||||:!:|||:!! rSerLeuGlnGlu 128314 : CTCGTTGCAAGAA : 128301 vulgar: CbirOr450 329 401 . KQ414817.1 128590 128300 - 124 M 55 165 5 0 2 I 0 70 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128301 128590 124 - . gene_id 1 ; sequence CbirOr450 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128590 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128590 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128301 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128301 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128301 128590 124 - . alignment_id 1 ; Query CbirOr450 ; Align 128591 330 165 ; Align 128352 385 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr470 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 100 -> 212 Target range: 1244188 -> 1243605 101 : AlaLeuAspAspLysArgGluIleGluIleIleGluLysTyrThrTyrPheMetAs : 119 ||| !|||..! ! ! !:!!:!:..!! |||:!! !:::|||||||||:::|| AlaThrAspSerTyrLeuGlnLeuSerThrIleLysValHisThrTyrPheLeuAs 1244188 : GCAACAGACAGCTATCTGCAGCTGTCAACGATTAAAGTGcacacatattttttaaa : 1244134 120 : nIleTyrThr{I} >>>> Target Intron 1 >>>> {le}SerIleMetV : 127 |||| {.} 247 bp {!!}|||:!! ! nIleLeuGln{P}++ -+{he}SerLeuSerG 1244133 : tatactgcaa{t}gt.........................cg{TC}TCTCTTTCAG : 1243863 128 : alPheLeuCysIleCysMetValLeuPheValPheLeuGluIleTrpProIleMet : 145 ! !|||! ! !! ! !:!!:!!||||||!!.!!! !:!! ||| !!!: lyThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIle 1243862 : GTACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATA : 1243809 146 : LeuAspPheValValProLeuAsnGluSerArgProArgLysMetHisValValAl : 164 |||||| !!||| !||||||||||||!!!||| !!|||! ! ::: LeuAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLe 1243808 : TTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaatt : 1243752 165 : aGluTyrPheIleAspArgGluLysTyrPheProPheMetLeuLeuHisGluIleV : 183 :::|||.!..!!|||! |||||| ||| ::: :!!:!! ! uGlnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyT 1243751 : gcaataccTGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGCT : 1243695 184 : alAlaCysLeuValGlyGlyValThrLeuLeuSerThrGlyThrIleCysMetIle : 201 !..!! !!!:!! ! !:!!..!:!!:!!!!!! !! !.!!:!!! !:!!:!! rpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValVal 1243694 : GGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTA : 1243641 202 : TyrAlaSerHisValCysGlyMetLeuLysIle : 212 ! ! !|||..!||||||:!:!!! :!! IleIleHisHisThrCysGlyLeuPheAlaVal 1243640 : ATCATTCATCACACGTGTGGCTTATTCGCTGTT : 1243606 vulgar: CbirOr470 100 212 . KQ414851.1 1244188 1243605 - 106 M 22 66 S 0 1 5 0 2 I 0 243 3 0 2 S 1 2 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1244188 106 - . gene_id 1 ; sequence CbirOr470 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1244122 1244188 . - . KQ414851.1 exonerate:protein2genome:local exon 1244122 1244188 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1244120 1244121 . - . intron_id 1 ; splice_site "gt" KQ414851.1 exonerate:protein2genome:local intron 1243875 1244121 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1243875 1243876 . - . intron_id 0 ; splice_site "cG" KQ414851.1 exonerate:protein2genome:local cds 1243606 1243874 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243874 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1244188 106 - . alignment_id 1 ; Query CbirOr470 ; Align 1244189 101 66 ; Align 1243873 124 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr470 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 120 -> 224 Target range: 1240106 -> 1239791 121 : TyrThrIleSerIleMetValPheLeuCysIleCysMetValLeuPheValPheLe : 139 |||! ! !! !||| ||| !!|||! ! ::: :::|||::: ! :! TyrIleTyrTyrIleSerValValLeuPheSerValLeuPheIlePheLeuValVa 1240106 : TACATATATTACATTTCAGTCGTTTTATTTTCcgttttgttcatttttctggTGGT : 1240052 140 : uGluIleTrpProIleMetLeuAspPheValValProLeuAsnGluSerArgProA : 158 ! |||:::||| :::||||||.!!:!! !||||||||||||!!!||| !!| lProIlePheProProLeuLeuAspIleLeuLysProLeuAsnGluThrArgAlaA 1240051 : TCcgatttttcctcctcttctggACATTTTAAAACCTTTAAACGAAACCCGAGCAC : 1239995 159 : rg<->LysMetHisValValAlaGluTyrPheIleAspArgGluLysTyrPhePro : 175 || |||::: ||| ! ! .!!|||||||||!!::!! ! !! ! rgGlnLysIlePheLysValAsnTyrLeuIleIleAspArgAspGluGlnAlaLeu 1239994 : gccagaaaatattcaaagttaaTTACCTGATCATTGACAGGGATGAACAAGCTCTG : 1239941 176 : PheMetLeuLeuHisGluIleValAlaCysLeuValGlyGlyValThrLeuLeuSe : 194 .!!! ! !!!!||| ! ! !.!! !:!!..! !|||:!!:!!:!!||||| IleThrTyrPheHisLeuSerTrpThrThrIleThrLeuGlyIleSerValLeuSe 1239940 : ATCACATATTTTCACTTGTCTTGGACAACTATCACTCTTGGGATATCTGTGCTTAG : 1239884 195 : rThrGlyThrIleCysMetIleTyrAlaSerHisValCysGlyMetLeuLysIleV : 213 |:!!! ! !|||! !:!::!! ! ! !|||..! !!|||:!!!!! :!:! rSerGluLeuIleTyrValLeuLeuIleHisHisThrSerGlyLeuPheAlaValA 1239883 : CTCAGAATTGATATACGTCCTTCTTATTCATCATACCAGCGGTCTGTTTGCTGTGG : 1239827 214 : alSerPheArgIleGluHisAlaLeuGlyLysAsn : 224 .!... ...:::|||.!!! !... ||| laGly***IlePheLysHisThrCysAsnIleAsn 1239826 : CTGggtaaatattcaaacataCCTGTAacataaac : 1239792 vulgar: CbirOr470 120 224 . KQ414851.1 1240106 1239791 - 100 M 38 114 G 0 3 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239792 1240106 100 - . gene_id 2 ; sequence CbirOr470 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239792 1240106 . - . KQ414851.1 exonerate:protein2genome:local exon 1239792 1240106 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239792 1240106 100 - . alignment_id 2 ; Query CbirOr470 ; Align 1240107 121 114 ; Align 1239990 159 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr465 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 339 -> 403 Target range: 1242808 -> 1242524 340 : PheSerSerAlaTyrAsnIleArgTrpTyrValAlaProValArgValGlnArgLe : 358 |||:::!:! !|||||| ! !|||||| !.!!|||||| !!:!!|||!:!:! PheThrAsnArgTyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIl 1242808 : tttaccAATAGATATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAAT : 1242754 359 : uIleLeuPheLeuLeuGlnLysGlyThrLysProTyrArgMetLysPheGlyGlyL : 377 !:!!! !.!.:!!! ! !!:!..! !||||||! !!:!:!! ! ||||||| eLeuHisIleValGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyL 1242753 : ACTTCATATAGTACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGAT : 1242697 378 : euTyrIleThrSerLeuGluAsnPheAlaSer >>>> Target Intron 1 > : 388 ||||| !! !!:!:!!|||||||||!.!||| 92 bp euTyrGluMetAsnIleGluAsnPheGlySer++ 1242696 : TATACGAAATGAACATTGAGAATTTTGGATCAgt...................... : 1242662 389 : >>> ValLeuThrAlaSerIleSerTyrPheThrValIleTyrSerIleGln : 403 ..!!!!! !.!!!!!|||||||||||||||:!!:!!! |||.!!:!! ++ThrPheLysThrCysIleSerTyrPheThrMetLeuLeuSerPheLys 1242661 : ...agacTTTCAAAACCTGCATATCGTACTTTACGATGCTCTTATCATTCAAA : 1242525 vulgar: CbirOr465 339 403 . KQ414851.1 1242808 1242524 - 118 M 48 144 5 0 2 I 0 88 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242525 1242808 118 - . gene_id 1 ; sequence CbirOr465 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1242665 1242808 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242808 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242525 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242525 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242525 1242808 118 - . alignment_id 1 ; Query CbirOr465 ; Align 1242809 340 144 ; Align 1242573 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr465 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 140 -> 222 Target range: 1224276 -> 1224030 141 : IleLeuIleIlePheThrValLeuProIleLeuProArgIlePheAspIlePhePh : 159 :!!|||:!!:!!!:!! ! !!!!|||:!::!! !! !:!!!!.|||:!! !! ValLeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAspValValAl 1224276 : GTTCTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGC : 1224222 160 : eLeuValAsnThrSerGluSerTyrArgAsnIleTyrIleThrThrGluTyrPheV : 178 ! !:!!||| !!!!..! !! !||| !:!: ! !..!!:! ! |||: aProLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheI 1224221 : GCCGTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCA : 1224165 179 : alAspLysGluLysTyrPheTyrPheIleLeuLeuHisMetTyrAlaAlaHisTyr : 196 !!|||:!! ! :!!:!!|||||| !:!: !!!!|||:!:|||.!!::! ! leAspGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIle 1224164 : TAGACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATT : 1224111 197 : IleAlaLeuGlyThrLeuIleGlyAlaGlyIleLeuTrpThrGlyTyrCysIleTy : 215 !..! ! !! !:!!|||!.!!.!! !!!:|||!::! ! ! ! !.!!:! SerCysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHi 1224110 : TCCTGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCA : 1224054 216 : rPheCysGlyLeuPheAlaIle : 222 !.!!|||||||||||||||:!: sLeuCysGlyLeuPheAlaVal 1224053 : CCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: CbirOr465 140 222 . KQ414851.1 1224276 1224030 - 100 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224276 100 - . gene_id 2 ; sequence CbirOr465 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224276 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224276 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224276 100 - . alignment_id 2 ; Query CbirOr465 ; Align 1224277 141 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr468 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 144 -> 213 Target range: 1224237 -> 1224030 145 : IleLeuSerThrIleLeuProIleAsnValSerGlnThrGlnArgIleMetTyrVa : 163 :!!|||..!..!:!! !|||:!!|||! !!!!!:! !!!::|||:!!:!! ! ValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLeuLeuLeuPr 1224237 : GTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCC : 1224183 164 : lMetThrGluTyrPheValAspGlnGluArgTyrPheTyrLeuIleLeuLeuHisI : 182 !:!:!:! ! |||:!!|||:!! ! ..!:!!|||||| !:!: !!!!|||: oValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValAsnPheHisL 1224182 : AGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAATTTTCACC : 1224126 183 : leAsnThrAlaThrTyrIleGlyMetIleValAlaValAlaThrGlyThrValLeu : 200 !! !!|||::!..! ! ! !! !!!::!! !:!!|||..!! !! !:!!! ! euTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAspMetLeuTyr 1224125 : TATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATATGTTATAC : 1224072 201 : IleGlyCysIleIleHisAlaCysGlyLeuPheSerIle : 213 ||| ! !|||.!!||| !||||||||||||:!!:!: IleThrIleIlePheHisLeuCysGlyLeuPheAlaVal 1224071 : ATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: CbirOr468 144 213 . KQ414851.1 1224237 1224030 - 109 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224237 109 - . gene_id 1 ; sequence CbirOr468 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224237 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224237 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224237 109 - . alignment_id 1 ; Query CbirOr468 ; Align 1224238 145 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr468 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 142 -> 213 Target range: 1243815 -> 1243605 143 : ProGlnIleLeuSerThrIleLeuProIleAsnValSerGlnThrGlnArgIleMe : 161 |||! !||||||..!..!:!!! !|||:!!|||! !!!!!:!:!! |||||| ProProIleLeuAspValValSerProLeuAsnGluThrArgSer---ArgIleGl 1243815 : CCGCCAATATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCT---CGGATAGa : 1243764 162 : tTyrValMetThrGluTyrPheValAspGlnGluArgTyrPheTyrLeuIleLeuL : 180 ::: :::|||.!. !!|||...|||::: |||||| ::: : uValIleLysLeuGlnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrV 1243763 : agtaataaaattgcaataccTGTTCGACAtggagaagaatttttattcattatacG : 1243707 181 : euHisIleAsnThrAlaThrTyrIleGlyMetIleValAlaValAlaThrGlyThr : 198 !!:!!! !..! !..!:!!!:!!!: !|||!!:||| !:!!.!!! !! !.!! alTyrThrGlyTrpCysSerPheMetThrMetMetValIleIleThrIleAspAla 1243706 : TCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCG : 1243653 199 : ValLeuIleGlyCysIleIleHisAlaCysGlyLeuPheSerIle : 213 :!!! !:!:! ! !||| !|||.!!||||||||||||:!!:!! LeuTyrValValIleIleHisHisThrCysGlyLeuPheAlaVal 1243652 : TTATATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCTGTT : 1243606 vulgar: CbirOr468 142 213 . KQ414851.1 1243815 1243605 - 101 M 15 45 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243815 101 - . gene_id 2 ; sequence CbirOr468 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243815 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243815 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243815 101 - . alignment_id 2 ; Query CbirOr468 ; Align 1243816 143 45 ; Align 1243771 159 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr466PSE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 119 -> 201 Target range: 32500 -> 32743 120 : GlyThrPheCysAsnSerIleIleIleTyrSerProTyrIleLeuAspIleValMetPro : 139 |||! !|||! ! !!:!!|||:!: !!:! !|||||||||:!!|||:!::!! !||| GlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaPro 32501 : GGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCT : 32558 140 : LysAsnGluSerTyrAlaIleHisMetMetGluMetValThrAsnTyrPhePheValSer : 159 !||||||||| ! !|||:!::!! ! !.! !.!.|||||| !!! !... LeuAsnGluSer---ArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGln 32559 : CTAAACGAATCC---CGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcag : 32615 160 : GluLysTyrTyrPheLeuIleLeuValHisLeuAsnAlaAlaCysThrThrGluLeuIle : 179 :::||||||:::... !||| !:!!|||:!! !!.!.!! !||| !! |||! GlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThr 32616 : caaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACG : 32675 180 : ValLeuGlyAlaThrThrThrMetMetMetAlaIlePheLysHisValCysGlyMetPhe : 199 ||| ! !|||... ::::::...::: ...... |||||||||!.!! ||| ValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPhe 32676 : GTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTC : 32735 200 : AlaIle : 201 !||| AsnIle 32736 : AATATT : 32743 vulgar: CbirOr466PSE 119 201 . KQ415081.1 32500 32743 + 118 M 24 72 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32501 32743 118 + . gene_id 1 ; sequence CbirOr466PSE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32501 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32501 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32501 32743 118 + . alignment_id 1 ; Query CbirOr466PSE ; Align 32501 120 72 ; Align 32573 145 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr470 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 127 -> 213 Target range: 32488 -> 32746 128 : PheLeuCysIleCysMetValLeuPheValPheLeuGluIleTrpProIleMetLeuAsp : 147 |||:!!! !||| ! !!: !!! !!:!!.!.!.:!!:!!.!! !||| !!!::!!||| PheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAsp 32489 : TTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGAC : 32546 148 : PheValValProLeuAsnGluSerArgProArgLysMetHisValValAlaGluTyrPhe : 167 ! :!!!.!||||||||||||||||||! !!.! !:!!! !!.!!.!||||||||| ValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPhe 32547 : GTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTC : 32606 168 : IleAspArgGluLysTyrPheProPheMetLeuLeuHisGluIleValAlaCysLeuVal : 187 :!!|||::::::||||||||| !!: !|||||| !:!!! !.!! ! !:!! ValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeu 32607 : GTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTT : 32666 188 : GlyGlyValThrLeuLeuSerThrGlyThrIleCysMetIleTyrAlaSerHisValCys : 207 ||| !..!..! ! !:!!... :::||| :::...::: !! !||||||||| GlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCys 32667 : GGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGC : 32726 208 : GlyMetLeuLysIleVal : 213 !.!! !!!!!.|||:!! AlaLysPheAsnIleLeu 32727 : GCCAAATTCAATATTCTC : 32746 vulgar: CbirOr470 127 213 . KQ415081.1 32488 32746 + 129 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32489 32746 129 + . gene_id 1 ; sequence CbirOr470 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32489 32746 . + . KQ415081.1 exonerate:protein2genome:local exon 32489 32746 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32489 32746 129 + . alignment_id 1 ; Query CbirOr470 ; Align 32489 128 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr470 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 335 -> 391 Target range: 6736 -> 6976 336 : TrpTyrValAlaProGlnSerSerGlnLysIleLeuLeuPheLeuMetHisArgThrMetLy : 356 ||||||..!.!! !! !!.!|||||||||!!:||||||||||||||||||||| !|||:! TrpTyrThrThrSerValLysSerGlnLysMetLeuLeuPheLeuMetHisArgPheMetGl 6737 : TGGTACACAACCTCGGTAAAATCCCAGAAAATGCTACTATTCCTCATGCACAGATTCATGGA : 6797 357 : sSerValLysProThrIleGlyAsnLeuPheValAlaSerLeuGluGlyPheAlaThr >> : 376 ! !! !!:!! ! !:!: !|||:!!!!.!.! !.!! !||| !!:!!.!..! uProCysArgLeuGlnLeuLysAsnValLeuAlaMetGlyAsnGluMetTyrValVal++ 6798 : ACCGTGCAGGCTACAACTGAAAAACGTATTGGCCATGGGCAACGAGATGTATGTTGTTgt.. : 6859 377 : >> Target Intron 1 >>>> LeuSerThrThrSerLeuSerTyrPheThrMetLeuT : 388 72 bp ||| ! !||||||!!!|||||||||! !:!:|||| ++LeuValGlnThrSerPheSerTyrPheMetValLeuT 6860 : .......................agCTGGTGCAGACGAGTTTCTCCTACTTCATGGTTCTCT : 6965 389 : yrSerLeuGln : 391 ||||||||||| yrSerLeuGln 6966 : ACTCGTTACAA : 6976 vulgar: CbirOr470 335 391 . KQ415081.1 6736 6976 + 104 M 40 120 5 0 2 I 0 68 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 6737 6976 104 + . gene_id 2 ; sequence CbirOr470 ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 6737 6856 . + . KQ415081.1 exonerate:protein2genome:local exon 6737 6856 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 6857 6858 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 6857 6928 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 6927 6928 . + . intron_id 0 ; splice_site "AG" KQ415081.1 exonerate:protein2genome:local cds 6929 6976 . + . KQ415081.1 exonerate:protein2genome:local exon 6929 6976 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 6737 6976 104 + . alignment_id 2 ; Query CbirOr470 ; Align 6737 336 120 ; Align 6929 376 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr459 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 138 -> 214 Target range: 32518 -> 32743 139 : ValIleValTyrTrpProTyrIleLeuAspIleValValProLysAsnGluSerHisThr : 158 :!!:!: !!:! !|||||||||:!!|||:!::!!!.!||| !|||||||||!.. IleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArg--- 32519 : ATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGA--- : 32576 159 : SerProMetIleGlnPheLeuSerGluTyrPheHisValSerGluLysTyrGlnPheLeu : 178 !! !:!::!:! !!:! !.!!||||||||| !! !...:::|||||| ... ! HisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuPro 32577 : CACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccA : 32633 179 : ValLeuValHisPheAsnThrAlaMetThrAlaGlySerIleValPheValGlyThrThr : 198 :!! !:!!|||.!. ! !.!!:!:||| !||| !! ||| !..!!.!... IleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAsp 32634 : ATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgat : 32693 199 : ThrMetLeuPheSerTyrPheLeuHisIleCysGlyMetPheGluIle : 214 ::::::...... :::...!!!|||:!!|||!.!! |||.!.||| SerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32694 : tcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr459 138 214 . KQ415081.1 32518 32743 + 107 M 19 57 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32519 32743 107 + . gene_id 1 ; sequence CbirOr459 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32519 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32519 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32519 32743 107 + . alignment_id 1 ; Query CbirOr459 ; Align 32519 139 57 ; Align 32576 159 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr457PSE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 125 -> 207 Target range: 32500 -> 32743 126 : GlyPhePheSerLeuSerLeuLeuProIleLeuProArgIlePheGlyIlePheSerLeu : 145 |||.!.||||||! !:!!:!!:!!! !.!!|||||| !|||.!!! !:!:.!.:!!! ! GlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaPro 32501 : GGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCT : 32558 146 : ValAsnLysSerGluLeuHisHisAsnIleTyrMetArgThrGluTyrPheValAspGln : 165 :!!|||:!!|||..! |||||| :!: ! !|||||||||||||||||| LeuAsnGluSerArg---HisHisValLeuProTyrAlaGlyGluTyrPheValAspGln 32559 : CTAAACGAATCCCGA---CACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcag : 32615 166 : GluLysTyrPheTyrPheIleLeuLeuHisLeuTyrAlaValGlnTyrIleGlyGlyGly : 185 :::||||||||| ||| !||||||:!! !!.!..! !:!!||| ! ! GlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThr 32616 : caaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACG : 32675 186 : IleLeuLeuGlyGluSerIleValMetValGlyTyrGlyThrTyrSerCysGlyLeuPhe : 205 :!! ! !!.!! ... :::...::: ::: ! !:!! !|||!.! !||| ValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPhe 32676 : GTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTC : 32735 206 : AsnIle : 207 |||||| AsnIle 32736 : AATATT : 32743 vulgar: CbirOr457PSE 125 207 . KQ415081.1 32500 32743 + 116 M 25 75 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32501 32743 116 + . gene_id 1 ; sequence CbirOr457PSE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32501 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32501 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32501 32743 116 + . alignment_id 1 ; Query CbirOr457PSE ; Align 32501 126 75 ; Align 32576 152 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr465 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 338 -> 404 Target range: 13647 -> 13915 339 : IlePheSerSerAlaTyrAsnIleArgTrpTyrValAlaProValArgValGlnArgLeu : 358 :!! ! !!! !!::!!:!::! !:!||||||..!|||||||||!:! !|||!:! ! LeuValThrArgSerPheSerGlyLysTrpTyrThrAlaProValLysSerGlnLysThr 13648 : CTTGTAACACGTAGCTTTTCTGGGAAATGGTACACAGCGCCGGTAAAATCCCAGAAAACG : 13705 359 : IleLeuPheLeuLeuGlnLysGlyThrLysProTyrArgMetLysPheGlyGlyLeuTyr : 378 :!!|||||||||:!!|||||| !! !||||||! !!:!!!::!! !! !..! ! ValLeuPheLeuMetGlnLysPheIleLysProCysLysIleGluValIleSerThrVal 13706 : GTTCTGTTCCTCATGCAGAAATTCATAAAACCGTGCAAGATAGAAGTTATATCCACGGTG : 13765 379 : IleThrSerLeuGluAsnPheAlaSer >>>> Target Intron 1 >>>> ValL : 389 !.!!.!! !|||!..!:!|||||| 70 bp :!!: AlaAlaGlySerGluThrTyrAlaSer++ ++IleV 13766 : GCCGCAGGTAGCGAGACGTACGCGAGCgt.........................agATTG : 13868 390 : euThrAlaSerIleSerTyrPheThrValIleTyrSerIleGlnLys : 404 !! ! !.!!.!!|||||||||! !|||:!!||||||:!:|||:!! alGlnIleGlyPheSerTyrPheMetValLeuTyrSerLeuGlnGlu 13869 : TGCAGATCGGTTTCTCCTACTTCATGGTTCTCTACTCGTTGCAAGAA : 13915 vulgar: CbirOr465 338 404 . KQ415081.1 13647 13915 + 111 M 49 147 5 0 2 I 0 66 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 13648 13915 111 + . gene_id 1 ; sequence CbirOr465 ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 13648 13794 . + . KQ415081.1 exonerate:protein2genome:local exon 13648 13794 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 13795 13796 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 13795 13864 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 13863 13864 . + . intron_id 0 ; splice_site "aG" KQ415081.1 exonerate:protein2genome:local cds 13865 13915 . + . KQ415081.1 exonerate:protein2genome:local exon 13865 13915 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 13648 13915 111 + . alignment_id 1 ; Query CbirOr465 ; Align 13648 339 147 ; Align 13865 388 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr465 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 334 -> 403 Target range: 38472 -> 38748 335 : HisTyrAsnTyrIlePheSerSerAlaTyrAsnIleArgTrpTyrValAlaProValArg : 354 ||| !:!! :!:||| !!!! !|||::: |||||||||! !||||||:!!!:! HisValAspIleLeuPheValArgPheTyrSer---ArgTrpTyrAspAlaProLeuLys 38473 : CACGTCGATATATTGTTCGTCAGGTTTTATTCA---CGATGGTACGACGCGCCTCTAAAA : 38527 355 : ValGlnArgLeuIleLeuPheLeuLeuGlnLysGlyThrLysProTyrArgMetLysPhe : 374 :!!|||!:!|||:!!|||.!!:!!:!!.!.!:!.!! !:!!||| !!:!::::.!! IleGlnLysLeuValLeuIleIleMetAsnArgSerPheGluProValGlyLeuArgIle 38528 : ATACAGAAACTAGTACTGATCATAATGAACAGAAGCTTCGAACCAGTAGGCCTCCGTATT : 38587 375 : GlyGlyLeuTyrIleThrSerLeuGluAsnPheAlaSer >>>> Target Intron : 388 |||! !! ! ! ...::::::|||||||||:::||| 72 bp GlyAspTyrGlnAspValThrIleGluAsnPheSerSer++ 38588 : GGCGATTACCAGGAcgtaacaattgaaaatttctcatcCgt................... : 38631 389 : 1 >>>> ValLeuThrAlaSerIleSerTyrPheThrValIleTyrSerIleGln : 403 :!!:!! !!.!|||.!!|||! |||! !|||:!!||||||:!!||| ++IleIleGlnValSerPheSerSerPheMetValLeuTyrSerLeuGln 38632 : ......agATAATTCAAGTGAGCTTCTCGTCGTTCATGGTACTCTACTCTCTACAA : 38748 vulgar: CbirOr465 334 403 . KQ415081.1 38472 38748 + 110 M 11 33 G 1 0 M 41 123 5 0 2 I 0 68 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 38473 38748 110 + . gene_id 2 ; sequence CbirOr465 ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 38473 38628 . + . KQ415081.1 exonerate:protein2genome:local exon 38473 38628 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local splice5 38629 38630 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 38629 38700 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 38699 38700 . + . intron_id 0 ; splice_site "AG" KQ415081.1 exonerate:protein2genome:local cds 38701 38748 . + . KQ415081.1 exonerate:protein2genome:local exon 38701 38748 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 38473 38748 110 + . alignment_id 2 ; Query CbirOr465 ; Align 38473 335 33 ; Align 38506 347 123 ; Align 38701 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr475 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 116 -> 214 Target range: 32452 -> 32743 117 : AsnThrGlyLysGlnPheAlaThrIleValIleIleLeuLeuValCysGlyLeuSerGly : 136 !.!||| ::: ||| |||..!! ! !!!!:!! ! !|||:!!! !..! ThrThrLeuArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSer 32453 : ACTACtctccgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCC : 32510 137 : AsnSerValIleIleTyrTrpProTyrIleLeuAspIleValValProLysAsnGluSer : 156 !!:!!:!!:!: !!:! !|||||||||:!!|||:!::!!!.!||| !||||||||| TyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSer 32511 : TACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCC : 32570 157 : TyrAlaIleHisMetMetGlnPheValThrGluTyrPheAsnValSerGluLysTyrTyr : 176 ! !|||:!::!!! !!:!!.! !||||||||| !! !...:::||||||::: ---ArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPhe 32571 : ---CGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttc : 32627 177 : PheLeuValValValHisLeuAsnAlaAlaCysSerThrGlyLeuIleValLeuAlaGly : 196 ... !:!!!.!:!!|||:!! !!.!.!! !!!! !||||||! ||| !.!!!.! LeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAla 32628 : ctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCT : 32687 197 : ThrGlyThrIlePhePheSerTyrLeuGlnGlnThrCysGlyMetPheGluIle : 214 ... :::||||||... :::::! !!...!|||!.!! |||.!.||| ValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32688 : GtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr475 116 214 . KQ415081.1 32452 32743 + 127 M 40 120 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32453 32743 127 + . gene_id 1 ; sequence CbirOr475 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32453 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32453 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32453 32743 127 + . alignment_id 1 ; Query CbirOr475 ; Align 32453 117 120 ; Align 32573 158 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr460 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 119 -> 214 Target range: 32461 -> 32743 120 : LysHisPheThrThrIleValValIlePheLeuValCysGlyLeuCysSerAsnSerGly : 139 ::: ||| |||..!..! !|||:!! ! !|||:!!! !||| !!:!! ! ArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIle 32462 : cgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATA : 32519 140 : IleValTyrTrpProTyrIleLeuAspIleIleValProAsnAsnGluSerTyrAlaIle : 159 :!: !!:! !|||||||||:!!|||:!:|||!.!||| ||||||||| ! ! ValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSer---ArgHis 32520 : GTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCC---CGACAC : 32576 160 : HisThrMetGlnPheValThrLysTyrPheAsnValSerGluLysTyrTyrPheLeuVal : 179 |||..!:!!! !!:!!.! !:!!|||||| !! !...:::||||||:::... !:!! HisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIle 32577 : CATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATC : 32636 180 : LeuValHisLeuAsnAlaAlaIleThrThrGlyLeuIleValSerValGlyThrGluThr : 199 !:!!|||:!! !!.!.!!:!!||| !||||||! |||:!!..!!.!...:::::: AlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSer 32637 : GCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattca : 32696 200 : MetIlePheSerTyrLeuLysHisIleCysGlyMetPheGluIle : 214 :::...... :::::! |||:!!|||!.!! |||.!.||| IlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32697 : attttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr460 119 214 . KQ415081.1 32461 32743 + 142 M 37 111 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32462 32743 142 + . gene_id 1 ; sequence CbirOr460 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32462 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32462 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32462 32743 142 + . alignment_id 1 ; Query CbirOr460 ; Align 32462 120 111 ; Align 32573 158 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr467IC Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 84 -> 174 Target range: 32476 -> 32743 85 : ValLeuThrLeuIleLeuLeuCysGlyIlePheValGlyValPheAsnAlaPheLeuPro : 104 :!! !||| !.!!:!!! ! !||||||||| ! !!.!.!. !||||||||| IleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuPro 32477 : aTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCG : 32534 105 : AsnIleLeuAspAlaAlaLeuSerThrAsnLysSerGlnSerProSerThrLeuHisIle : 124 !!|||:!!|||!.! ! ! !! !|||:!!|||!:! ! !..!|||! ! TyrIleIleAspValIleAlaProLeuAsnGluSerArgHis---HisValLeuProTyr 32535 : TACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACAC---CATGTACTGCCGTAC : 32591 125 : MetThrGluTyrPheIleAspGlnLysLysTyrPheTyrLeuIleMetMetHisLysGlu : 144 !|||||||||:!!||||||:::||||||||| !||| !:!!|||! ! AlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeu 32592 : GCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTC : 32651 145 : AlaAlaSerCysIleGlyValThrAlaIleValAlaThrGlyThrMetThrMetLeuTyr : 164 !.!.!! ! !:!!|||:!!|||!.! !..!|||... :::::: :::...::: GlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePhe 32652 : GGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttc : 32711 165 : PheGlnHisAlaCysGlyMetPheMetIle : 174 ... |||!.!|||!.!! |||! ||| MetPheHisValCysAlaLysPheAsnIle 32712 : atGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr467IC 84 174 . KQ415081.1 32476 32743 + 116 M 34 102 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32477 32743 116 + . gene_id 1 ; sequence CbirOr467IC ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32477 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32477 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32477 32743 116 + . alignment_id 1 ; Query CbirOr467IC ; Align 32477 85 102 ; Align 32579 120 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr456 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 321 -> 376 Target range: 38472 -> 38634 322 : HisTyrAsnAsnMetPheSerSerAlaTyrSerIleGluTrpTyrArgAlaProIleArg : 341 ||| !:!!! :!!||| !!!! !|||||| ..!|||||| !||||||:!!!:! HisValAspIleLeuPheValArgPheTyrSer---ArgTrpTyrAspAlaProLeuLys 38473 : CACGTCGATATATTGTTCGTCAGGTTTTATTCA---CGATGGTACGACGCGCCTCTAAAA : 38527 342 : ValGlnLysLeuIleLeuPheLeuLeuGlnArgSerCysLysMetHisGlyIleLysIle : 361 :!!|||||||||:!!|||.!!:!!:!!.!.||||||! !:!! |||:!!:::||| IleGlnLysLeuValLeuIleIleMetAsnArgSerPheGluProValGlyLeuArgIle 38528 : ATACAGAAACTAGTACTGATCATAATGAACAGAAGCTTCGAACCAGTAGGCCTCCGTATT : 38587 362 : GlyGlyLeuPheThrAlaSerLeuGluGlyPheAlaSerLeuSer : 376 |||! !! ! ...::::::|||...|||:::|||:!!||| GlyAspTyrGlnAspValThrIleGluAsnPheSerSerValSer 38588 : GGCGATTACCAGGAcgtaacaattgaaaatttctcatcCGTAAGT : 38634 vulgar: CbirOr456 321 376 . KQ415081.1 38472 38634 + 101 M 11 33 G 1 0 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 38473 38634 101 + . gene_id 1 ; sequence CbirOr456 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 38473 38634 . + . KQ415081.1 exonerate:protein2genome:local exon 38473 38634 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 38473 38634 101 + . alignment_id 1 ; Query CbirOr456 ; Align 38473 322 33 ; Align 38506 334 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr468 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 142 -> 214 Target range: 32533 -> 32746 143 : ProGlnIleLeuSerThrIleLeuProIleAsnValSerGlnThrGlnArgIleMetTyr : 162 ||| ! |||:!!..!..!||| !|||:!!|||! !|||!:! !!!. !:!: !||| ProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyr 32534 : CCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTAC : 32591 163 : ValMetThrGluTyrPheValAspGlnGluArgTyrPheTyrLeuIleLeuLeuHisIle : 182 !.! !||||||||||||||||||::::::|||||| !||| !||||||!!: Ala---GlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMet 32592 : GCC---GGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATG : 32648 183 : AsnThrAlaThrTyrIleGlyMetIleValAlaValAlaThrGlyThrValLeuIleGly : 202 ! !.!!..! !:!!|||:!!! ||||||..!|||... ::::::...||| LeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhe 32649 : CTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattc : 32708 203 : CysIleIleHisAlaCysGlyLeuPheSerIleVal : 214 :::.!!|||!.!|||!.! !|||!:!|||:!! PheMetPheHisValCysAlaLysPheAsnIleLeu 32709 : ttcatGTTCCACGTTTGCGCCAAATTCAATATTCTC : 32746 vulgar: CbirOr468 142 214 . KQ415081.1 32533 32746 + 121 M 21 63 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32534 32746 121 + . gene_id 1 ; sequence CbirOr468 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32534 32746 . + . KQ415081.1 exonerate:protein2genome:local exon 32534 32746 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32534 32746 121 + . alignment_id 1 ; Query CbirOr468 ; Align 32534 143 63 ; Align 32597 165 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr454INT Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 293 -> 359 Target range: 13647 -> 13915 294 : MetPheSerThrAlaTyrAsnValGlnTrpTyrMetAlaProIleArgValGlnLysLeu : 313 :!: ! !!! !::!!:!::!! !:!!||||||! ||||||:!!!:! !|||||| ! LeuValThrArgSerPheSerGlyLysTrpTyrThrAlaProValLysSerGlnLysThr 13648 : CTTGTAACACGTAGCTTTTCTGGGAAATGGTACACAGCGCCGGTAAAATCCCAGAAAACG : 13705 314 : IleLeuPheLeuLeuGlnArgSerCysLysMetPheGlyIleLysThrGlyGlyLeuPhe : 333 :!!|||||||||:!!|||!:!! ! ||| !! ! !|||:!!..! !..! ! ! ValLeuPheLeuMetGlnLysPheIleLysProCysLysIleGluValIleSerThrVal 13706 : GTTCTGTTCCTCATGCAGAAATTCATAAAACCGTGCAAGATAGAAGTTATATCCACGGTG : 13765 334 : MetAlaSerLeuGluCysPheAlaSer >>>> Target Intron 1 >>>> IleS : 344 |||.!! !||| !:!|||||| 70 bp ||| AlaAlaGlySerGluThrTyrAlaSer++ ++IleV 13766 : GCCGCAGGTAGCGAGACGTACGCGAGCgt.........................agATTG : 13868 345 : erThrAlaSerValSerTyrPheThrValLeuTyrSerValGlnLys : 359 ! ! !.!! !!|||||||||! !||||||||||||:!!|||:!! alGlnIleGlyPheSerTyrPheMetValLeuTyrSerLeuGlnGlu 13869 : TGCAGATCGGTTTCTCCTACTTCATGGTTCTCTACTCGTTGCAAGAA : 13915 vulgar: CbirOr454INT 293 359 . KQ415081.1 13647 13915 + 102 M 49 147 5 0 2 I 0 66 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 13648 13915 102 + . gene_id 1 ; sequence CbirOr454INT ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 13648 13794 . + . KQ415081.1 exonerate:protein2genome:local exon 13648 13794 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 13795 13796 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 13795 13864 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 13863 13864 . + . intron_id 0 ; splice_site "aG" KQ415081.1 exonerate:protein2genome:local cds 13865 13915 . + . KQ415081.1 exonerate:protein2genome:local exon 13865 13915 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 13648 13915 102 + . alignment_id 1 ; Query CbirOr454INT ; Align 13648 294 147 ; Align 13865 343 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr454INT Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 286 -> 358 Target range: 38463 -> 38748 287 : IleMetGluHisTyrAsnTyrMetPheSerThrAlaTyrAsnValGlnTrpTyrMetAla : 306 .!!:!: !||| !:!! :!!||| !! ! !|||::: !:!|||||| ||| PheValThrHisValAspIleLeuPheValArgPheTyrSer---ArgTrpTyrAspAla 38464 : TTCGTAACGCACGTCGATATATTGTTCGTCAGGTTTTATTCA---CGATGGTACGACGCG : 38518 307 : ProIleArgValGlnLysLeuIleLeuPheLeuLeuGlnArgSerCysLysMetPheGly : 326 |||:!!!:!:!!|||||||||:!!|||.!!:!!:!!.!.||||||! !:!! ! ||| ProLeuLysIleGlnLysLeuValLeuIleIleMetAsnArgSerPheGluProValGly 38519 : CCTCTAAAAATACAGAAACTAGTACTGATCATAATGAACAGAAGCTTCGAACCAGTAGGC : 38578 327 : IleLysThrGlyGlyLeuPheMetAlaSerLeuGluCysPheAlaSer >>>> Targe : 343 :!!:::! !|||! !! ! ...::::::||| |||:::||| LeuArgIleGlyAspTyrGlnAspValThrIleGluAsnPheSerSer++ 38579 : CTCCGTATTGGCGATTACCAGGAcgtaacaattgaaaatttctcatcCgt.......... : 38631 344 : t Intron 1 >>>> IleSerThrAlaSerValSerTyrPheThrValLeuTyrSerV : 357 72 bp |||! ! !!.!||| !!|||! |||! !||||||||||||: ++IleIleGlnValSerPheSerSerPheMetValLeuTyrSerL 38632 : ...............agATAATTCAAGTGAGCTTCTCGTCGTTCATGGTACTCTACTCTC : 38743 358 : alGln : 358 !!||| euGln 38744 : TACAA : 38748 vulgar: CbirOr454INT 286 358 . KQ415081.1 38463 38748 + 101 M 14 42 G 1 0 M 41 123 5 0 2 I 0 68 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 38464 38748 101 + . gene_id 2 ; sequence CbirOr454INT ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 38464 38628 . + . KQ415081.1 exonerate:protein2genome:local exon 38464 38628 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local splice5 38629 38630 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 38629 38700 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 38699 38700 . + . intron_id 0 ; splice_site "AG" KQ415081.1 exonerate:protein2genome:local cds 38701 38748 . + . KQ415081.1 exonerate:protein2genome:local exon 38701 38748 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 38464 38748 101 + . alignment_id 2 ; Query CbirOr454INT ; Align 38464 287 42 ; Align 38506 302 123 ; Align 38701 343 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr458 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 123 -> 211 Target range: 32482 -> 32743 124 : ThrSerLeuThrMetCysGlyPhePheIleValThrValLeuProIleLeuProTrpIle : 143 |||.!!!!!..! !|||.!.||| ! !.!!:!!:!!! !.!!||||||!::||| ThrGlyPheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIle 32483 : ACAGGATTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATT : 32540 144 : PheGlyIlePheSerLeuValAsnGluSerLysProHisArgAsnIleTyrIleArgThr : 163 .!!! !:!:.!.:!!! !:!!|||||||||::!! !||| ! ||| ! ! IleAspValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyr---AlaGly 32541 : ATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTAC---GCCGGC : 32597 164 : GluTyrPheValAspGlnGluLysTyrPheTyrPheIleLeuLeuHisLeuTyrAlaAsn : 183 ||||||||||||||||||:::||||||||| ||| !||||||:!! !!.!!.! GluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThr 32598 : GAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACC : 32657 184 : GlnTyrIleGlyGlyGlyIleLeuLeuGlyGlyAlaIleValValThrGlyTyrPheThr : 203 !:!!||| ! !:!! ! !!.!! ::: :::... ! ValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPhe 32658 : GTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTC : 32717 204 : TyrPheCysGlyLeuPheAsnIle : 211 :!! !!|||!.! !||||||||| HisValCysAlaLysPheAsnIle 32718 : CACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr458 123 211 . KQ415081.1 32482 32743 + 112 M 37 111 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32483 32743 112 + . gene_id 1 ; sequence CbirOr458 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32483 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32483 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32483 32743 112 + . alignment_id 1 ; Query CbirOr458 ; Align 32483 124 111 ; Align 32594 162 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr450 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 335 -> 400 Target range: 38481 -> 38748 336 : IlePheSerThrAlaTyrAsnValArgTrpTyrIleAlaSerValArgValGlnLysLeu : 355 |||!!.! !..! !!:! !! !||||||||| !||| !!:!!!:!:!!||||||||| IleLeuPheValArgPheTyrSerArgTrpTyrAspAlaProLeuLysIleGlnLysLeu 38482 : ATATTGTTCGTCAGGTTTTATTCACGATGGTACGACGCGCCTCTAAAAATACAGAAACTA : 38539 356 : IleLeuPheLeuLeuGlnArgSerAlaLysProTyrAspIleLysPheGlyGlyLeuTyr : 375 :!!|||.!!:!!:!!.!.|||||| !:!!||| ! !:!!:::.!!|||! !! ! ! ValLeuIleIleMetAsnArgSerPheGluProValGlyLeuArgIleGlyAspTyrGln 38540 : GTACTGATCATAATGAACAGAAGCTTCGAACCAGTAGGCCTCCGTATTGGCGATTACCAG : 38599 376 : ThrAlaSerLeuGluAsnPheAlaThr >>>> Target Intron 1 >>>> LeuS : 386 ...::::::|||||||||:::::! 72 bp :!!! AspValThrIleGluAsnPheSerSer++ ++IleI 38600 : GAcgtaacaattgaaaatttctcatcCgt.........................agATAA : 38704 387 : erThrAlaSerIleSerTyrPheThrValIleTyrSerIleGln : 400 ! !!.!|||.!!|||! |||! !|||:!!||||||:!!||| leGlnValSerPheSerSerPheMetValLeuTyrSerLeuGln 38705 : TTCAAGTGAGCTTCTCGTCGTTCATGGTACTCTACTCTCTACAA : 38748 vulgar: CbirOr450 335 400 . KQ415081.1 38481 38748 + 107 M 49 147 5 0 2 I 0 68 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 38482 38748 107 + . gene_id 1 ; sequence CbirOr450 ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 38482 38628 . + . KQ415081.1 exonerate:protein2genome:local exon 38482 38628 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 38629 38630 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 38629 38700 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 38699 38700 . + . intron_id 0 ; splice_site "AG" KQ415081.1 exonerate:protein2genome:local cds 38701 38748 . + . KQ415081.1 exonerate:protein2genome:local exon 38701 38748 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 38482 38748 107 + . alignment_id 1 ; Query CbirOr450 ; Align 38482 336 147 ; Align 38701 385 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr450 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 332 -> 401 Target range: 6700 -> 6979 333 : TyrSerTyrIlePheSerThrAlaTyrAsnValArgTrpTyrIleAlaSerValArgValGl : 353 !:!||| !:!! ! !!! !::!||| !!.!!:!||||||! !.!!||||||!:! !|| PheSerIleLeuValThrPheSerTyrCysAlaLysTrpTyrThrThrSerValLysSerGl 6701 : TTCTCTATTCTTGTAACATTTAGCTATTGTGCAAAATGGTACACAACCTCGGTAAAATCCCA : 6761 354 : nLysLeuIleLeuPheLeuLeuGlnArgSerAlaLysProTyrAspIleLysPheGlyGlyL : 374 ||||:!!:!!|||||||||:!!!!.|||! ! !:!!|||! ! :!!:!!.!. !..!: nLysMetLeuLeuPheLeuMetHisArgPheMetGluProCysArgLeuGlnLeuLysAsnV 6762 : GAAAATGCTACTATTCCTCATGCACAGATTCATGGAACCGTGCAGGCTACAACTGAAAAACG : 6824 375 : euTyrThrAlaSerLeuGluAsnPheAlaThr >>>> Target Intron 1 >>>> L : 385 !!! .!! !.!! !|||! !:!!.!..! 72 bp | alLeuAlaMetGlyAsnGluMetTyrValVal++ ++L 6825 : TATTGGCCATGGGCAACGAGATGTATGTTGTTgt.........................agC : 6929 386 : euSerThrAlaSerIleSerTyrPheThrValIleTyrSerIleGlnLys : 401 || ! !.!!|||.!!|||||||||! !|||:!!||||||:!!|||:!! euValGlnThrSerPheSerTyrPheMetValLeuTyrSerLeuGlnGlu 6930 : TGGTGCAGACGAGTTTCTCCTACTTCATGGTTCTCTACTCGTTACAAGAA : 6979 vulgar: CbirOr450 332 401 . KQ415081.1 6700 6979 + 102 M 52 156 5 0 2 I 0 68 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 6701 6979 102 + . gene_id 2 ; sequence CbirOr450 ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 6701 6856 . + . KQ415081.1 exonerate:protein2genome:local exon 6701 6856 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 6857 6858 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 6857 6928 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 6927 6928 . + . intron_id 0 ; splice_site "AG" KQ415081.1 exonerate:protein2genome:local cds 6929 6979 . + . KQ415081.1 exonerate:protein2genome:local exon 6929 6979 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 6701 6979 102 + . alignment_id 2 ; Query CbirOr450 ; Align 6701 333 156 ; Align 6929 385 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr450 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 335 -> 401 Target range: 13647 -> 13915 336 : IlePheSerThrAlaTyrAsnValArgTrpTyrIleAlaSerValArgValGlnLysLeu : 355 :!! ! !!! !::!!:!::!! !!:!||||||! !||| !!|||!:! !|||||| ! LeuValThrArgSerPheSerGlyLysTrpTyrThrAlaProValLysSerGlnLysThr 13648 : CTTGTAACACGTAGCTTTTCTGGGAAATGGTACACAGCGCCGGTAAAATCCCAGAAAACG : 13705 356 : IleLeuPheLeuLeuGlnArgSerAlaLysProTyrAspIleLysPheGlyGlyLeuTyr : 375 :!!|||||||||:!!|||!:!! ! !||||||! ! ! |||:!! !! !..! ! ValLeuPheLeuMetGlnLysPheIleLysProCysLysIleGluValIleSerThrVal 13706 : GTTCTGTTCCTCATGCAGAAATTCATAAAACCGTGCAAGATAGAAGTTATATCCACGGTG : 13765 376 : ThrAlaSerLeuGluAsnPheAlaThr >>>> Target Intron 1 >>>> LeuS : 386 .!!|||.!! !|||!..!:!|||!:! 70 bp :!! AlaAlaGlySerGluThrTyrAlaSer++ ++IleV 13766 : GCCGCAGGTAGCGAGACGTACGCGAGCgt.........................agATTG : 13868 387 : erThrAlaSerIleSerTyrPheThrValIleTyrSerIleGlnLys : 401 ! ! !.!!.!!|||||||||! !|||:!!||||||:!:|||:!! alGlnIleGlyPheSerTyrPheMetValLeuTyrSerLeuGlnGlu 13869 : TGCAGATCGGTTTCTCCTACTTCATGGTTCTCTACTCGTTGCAAGAA : 13915 vulgar: CbirOr450 335 401 . KQ415081.1 13647 13915 + 102 M 49 147 5 0 2 I 0 66 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 13648 13915 102 + . gene_id 3 ; sequence CbirOr450 ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 13648 13794 . + . KQ415081.1 exonerate:protein2genome:local exon 13648 13794 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 13795 13796 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 13795 13864 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 13863 13864 . + . intron_id 0 ; splice_site "aG" KQ415081.1 exonerate:protein2genome:local cds 13865 13915 . + . KQ415081.1 exonerate:protein2genome:local exon 13865 13915 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 13648 13915 102 + . alignment_id 3 ; Query CbirOr450 ; Align 13648 336 147 ; Align 13865 385 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr471NTE Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 80 -> 167 Target range: 4984 -> 5239 81 : PheAlaLeuCysGlyIleLeuSerThrCysIleMetIleTyrSerProHisIleLeuAspIl : 101 .!.:!!||||||!.! !|||! !! !|||:!: !.!! |||||| ||||||||||| IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerPro---IleLeuAspIl 4985 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCG---ATTCTGGACAT : 5042 102 : eValMetProLysAsnGluSerTyrAlaIleHisThrMetGluMetValThrLysTyrPheV : 122 |:!!|||||| !||||||!!! ||| !.. !.!.! !.!! ! ||||||| eLeuMetProLeuAsnGluThrArgAla---ArgLeuPheValTyrProAlaTyrTyrPheV 5043 : CCTTATGCCGTTGAACGAGACGCGAGCA---CGGTTGTTCGTCTATCCAGCTTACTATTTCG : 5102 123 : alValSerGluLysTyrTyrPheLeuIleLeuValHisThrAsnAlaAlaCysSerValGly : 142 ||! !..!!!:||||||:!!!:!||||||:!!! !|||! ! !! !!.! !:!! ! alAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeu 5103 : TCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTT : 5162 143 : LeuIleValLeuValGlyThrGlyThrMetMetIleSerTyrIleGluHisValCysGlyMe : 163 :!! !|||!!! !!.! !! !.!!! :!:! ! !:!::!!|||!.!||||||:! IleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLe 5163 : ATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATT : 5225 164 : tPheGluIleAla : 167 !!!.! |||||| uLeuAlaIleAla 5226 : GTTGGCCATTGCA : 5239 vulgar: CbirOr471NTE 80 167 . LHQN01025741.1 4984 5239 + 103 M 16 48 G 1 0 M 13 39 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4985 5239 103 + . gene_id 1 ; sequence CbirOr471NTE ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4985 5239 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4985 5239 . + . insertions 0 ; deletions 2 LHQN01025741.1 exonerate:protein2genome:local similarity 4985 5239 103 + . alignment_id 1 ; Query CbirOr471NTE ; Align 4985 81 48 ; Align 5033 98 39 ; Align 5072 112 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr470 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 117 -> 224 Target range: 4951 -> 5272 118 : MetAsnIleTyrThrIleSerIleMetValPheLeuCysIleCysMetValLeuPheValPh : 138 :!!:::.!!||| !! ! ! !! ||| !:!!! :!!||| !.!||||||:!!! LeuSerPheTyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCy 4952 : CTGTCATTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTG : 5012 139 : eLeuGluIleTrpProIleMetLeuAspPheValValProLeuAsnGluSerArgProArgL : 159 !||| !.!! ! !! !!:||||||.!!:!!:!!||||||||||||!!!||| !!||| sLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgL 5013 : CTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGT : 5075 160 : ysMetHisValValAlaGluTyrPheIleAspArgGluLysTyrPheProPheMetLeuLeu : 179 !.!. ! ! !||| ! ||||||:!!|||..!!!:|||||| ! !!!.!!::!! ! euPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGly 5076 : TGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGG : 5135 180 : HisGluIleValAlaCysLeuValGlyGlyValThrLeuLeuSerThrGlyThrIleCysMe : 200 ||| ! !:!!!.! :!!:!! ! ! !..!!!!! !:!! !! !.!!! !! !:! HisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrVa 5136 : CATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGT : 5198 201 : tIleTyrAlaSerHisValCysGlyMetLeuLysIleValSerPheArgIleGluHisAlaL : 221 ! ! !!.!..!|||!.!||||||:!!||| |||!.!.!!! !:!!:!! !| lTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGlnL 5199 : GTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAAT : 5261 222 : euGlyLysAsn : 224 || !:!!||| euMetGluAsn 5262 : TAATGGAAAAT : 5272 vulgar: CbirOr470 117 224 . LHQN01025741.1 4951 5272 + 113 M 107 321 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4952 5272 113 + . gene_id 1 ; sequence CbirOr470 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4952 5272 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4952 5272 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4952 5272 113 + . alignment_id 1 ; Query CbirOr470 ; Align 4952 118 321 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr470 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 126 -> 224 Target range: 5684 -> 5390 127 : ValPheLeuCysIleCysMetValLeuPheValPheLeuGluIleTrpProIleMetLeuAs : 147 ||| !:!!! :!!||| !.!||||||:!!! !||| !.!! ! !! !!:||||| ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAs 5684 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGA : 5624 148 : pPheValValProLeuAsnGluSerArgProArgLysMetHisValValAlaGluTyrPheI : 168 |.!!:!!:!!||||||||||||!!!||| !!||| !.!. ! ! !||| ! ||||||: pIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheV 5623 : CATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCG : 5561 169 : leAspArgGluLysTyrPheProPheMetLeuLeuHisGluIleValAlaCysLeuValGly : 188 !!|||..!!!:|||||| ! !!!.!!::!! !||| ! !:!!!.! :!!:!! ! alAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeu 5560 : TCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTT : 5501 189 : GlyValThrLeuLeuSerThrGlyThrIleCysMetIleTyrAlaSerHisValCysGlyMe : 209 ! !..!!!!! !:!! !! !.!!! !! !:!! ! !!.!..!|||!.!||||||:! IleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLe 5500 : ATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATT : 5438 210 : tLeuLysIleValSerPheArgIleGluHisAlaLeuGlyLysAsn : 224 !||| |||!.!.!!! !:!!:!! !||| !:!!||| uLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGluAsn 5437 : GTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAAT : 5391 vulgar: CbirOr470 126 224 . LHQN01028732.1 5684 5390 - 110 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5391 5684 110 - . gene_id 1 ; sequence CbirOr470 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5391 5684 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5391 5684 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5391 5684 110 - . alignment_id 1 ; Query CbirOr470 ; Align 5685 127 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr471NTE Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 72 -> 167 Target range: 5702 -> 5423 73 : CysIleThrAlaArgLeuThrIlePheAlaLeuCysGlyIleLeuSerThrCysIleMetIl : 93 |||.!!||| !..! !..! !.!.:!!||||||!.! !|||! !! !|||:!: !.! CysPheThrPheGluLysValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPh 5702 : TGTTTCACGTTTGAAAAAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTT : 5642 94 : eTyrSerProHisIleLeuAspIleValMetProLysAsnGluSerTyrAlaIleHisThrM : 114 ! |||||| ||||||||||||:!!|||||| !||||||!!! ||| !.. !. eValSerPro---IleLeuAspIleLeuMetProLeuAsnGluThrArgAla---ArgLeuP 5641 : CGTGTCGCCG---ATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCA---CGGTTGT : 5585 115 : etGluMetValThrLysTyrPheValValSerGluLysTyrTyrPheLeuIleLeuValHis : 134 !.! !.!! ! |||||||||! !..!!!:|||||| !!:!||||||:!!! !||| heValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuIleValGlyHis 5584 : TCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCAT : 5525 135 : ThrAsnAlaAlaCysSerValGlyLeuIleValLeuValGlyThrGlyThrMetMetIleSe : 155 ! ! !! !!.! !:!! !:!! !|||!!! !!.! !! !.!!! :!:! MetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTy 5524 : ATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTA : 5462 156 : rTyrIleGluHisValCysGlyMetPheGluIleAla : 167 ! !:!::!!|||!.!||||||:!!!!.! |||||| rAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla 5461 : CGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCA : 5424 vulgar: CbirOr471NTE 72 167 . LHQN01028732.1 5702 5423 - 106 M 24 72 G 1 0 M 13 39 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5424 5702 106 - . gene_id 1 ; sequence CbirOr471NTE ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5424 5702 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5424 5702 . - . insertions 0 ; deletions 2 LHQN01028732.1 exonerate:protein2genome:local similarity 5424 5702 106 - . alignment_id 1 ; Query CbirOr471NTE ; Align 5703 73 72 ; Align 5631 98 39 ; Align 5592 112 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr470 Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 124 -> 213 Target range: 439 -> 706 125 : IleMetValPheLeuCysIleCysMetValLeuPheValPheLeuGluIleTrpProIleMetL : 146 ||| ||||||! !! !:!: :!::!! !||||||||||||:!!||| ||| !!!:| IleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuProGlnIleL 440 : ATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAATTT : 503 147 : euAspPheValValProLeuAsnGluSerArgProArgLysMetHisValValAlaGluTyrPh : 167 ||! !.!.:!! !||||||!.!|||! !!.! !!!.!|||:!:! !||| !.!!|||||||| euGlyIleIleSerProLeuThrGluIleAsnThrAsnLysLeuLeuValArgThrGluTyrPh 504 : TAGGCATAATTTCACCTCTAACCGAGATCAATACTAACAAATTACTCGTTCGAACCGAATACTT : 566 168 : eIleAspArgGluLysTyrPheProPheMetLeuLeuHisGluIleValAlaCysLeuValGly : 188 |:!!||| !:!! ! |||.!! !.!.!!: !:!!|||! !! !:!!||| :!! !.!! eValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAlaThrIleAlaIleMetCysSer 567 : TGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCGACTATAGCAATAATGTGTAGT : 629 189 : GlyValThrLeuLeuSerThrGlyThrIleCysMetIleTyrAlaSerHisValCysGlyMetL : 210 ! !..!! !! !:!!|||!:!! !! ::: |||::: !! !|||:!! !!||||||! ValThrMetGlnIleSerSerAspIleLeuAsnAsnIlePheMetMetHisIleSerGlyMetP 630 : GTGACTATGCAAATTAGCAGCGATAttttgaataacatatttatGATGCACATCAGTGGAATGT : 695 211 : euLysIleVal : 213 !!:!!:!!:!! heGluValIle 696 : TCGAGGTAATT : 706 vulgar: CbirOr470 124 213 . LHQN01050134.1 439 706 + 132 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 440 706 132 + . gene_id 1 ; sequence CbirOr470 ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 440 706 . + . LHQN01050134.1 exonerate:protein2genome:local exon 440 706 . + . insertions 0 ; deletions 0 LHQN01050134.1 exonerate:protein2genome:local similarity 440 706 132 + . alignment_id 1 ; Query CbirOr470 ; Align 440 125 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr468 Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 137 -> 214 Target range: 478 -> 706 138 : PheLeuSerIleTrpProGlnIleLeuSerThrIleLeuProIleAsnValSerGlnThrGlnA : 159 ||||||..!||| ||||||||||||.!!! !|||! !|||:!!!.!! !! !.!.|||.!.! PheLeuGlnIleLeuProGlnIleLeuGlyIleIleSerProLeuThrGluIleAsnThrAsnL 479 : TTCTTGCAAATTCTCCCGCAAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAACA : 542 160 : rgIleMetTyrValMetThrGluTyrPheValAspGlnGluArgTyrPheTyrLeuIleLeuLe : 180 :!:!!:!: ||| |||||||||||||||||| ! :!! !|||.!!||||||||| !:! ysLeuLeu---ValArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIl 543 : AATTACTC---GTTCGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGAT : 602 181 : uHisIleAsnThrAlaThrTyrIleGlyMetIleValAlaValAlaThrGlyThrValLeuIle : 201 !||| !.!! !|||! ! !.!!:!!! !:!! !:!!::!!:!! !! ::: eHisAlaThrIleAlaIleMetCysSerValThrMetGlnIleSerSerAspIleLeuAsnAsn 603 : CCACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaataac : 665 202 : GlyCysIleIleHisAlaCysGlyLeuPheSerIleVal : 214 :::!!:||| ! !!|||:!!|||..!:!!:!! IlePheMetMetHisIleSerGlyMetPheGluValIle 666 : atatttatGATGCACATCAGTGGAATGTTCGAGGTAATT : 706 vulgar: CbirOr468 137 214 . LHQN01050134.1 478 706 + 115 M 24 72 G 1 0 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 479 706 115 + . gene_id 1 ; sequence CbirOr468 ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 479 706 . + . LHQN01050134.1 exonerate:protein2genome:local exon 479 706 . + . insertions 0 ; deletions 1 LHQN01050134.1 exonerate:protein2genome:local similarity 479 706 115 + . alignment_id 1 ; Query CbirOr468 ; Align 479 138 72 ; Align 551 163 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr467IC Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 97 -> 174 Target range: 475 -> 703 98 : ValPheAsnAlaPheLeuProAsnIleLeuAspAlaAlaLeuSerThrAsnLysSerGlnSerP : 119 |||||| !.!!||||||.!.|||||| !.! !:!!||| !! ! ..! !:! ValPheLeuGlnIleLeuProGlnIleLeu---GlyIleIleSerProLeuThrGluIleAsnT 476 : GTTTTCTTGCAAATTCTCCCGCAAATTTTA---GGCATAATTTCACCTCTAACCGAGATCAATA : 536 120 : roSerThrLeuHisIleMetThrGluTyrPheIleAspGlnLysLysTyrPheTyrLeuIleMe : 140 !!!:!! !|||! !:!! ||||||||||||:!!||| ! ||| ! |||.!!|||||||||! hrAsnLysLeuLeuValArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleTh 537 : CTAACAAATTACTCGTTCGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCAC : 599 141 : tMetHisLysGluAlaAlaSerCysIleGlyValThrAlaIleValAlaThrGlyThrMetThr : 161 !!!:||| ! !|||! ! !.!!|||||| ! !:!!::!!:!! !! :::... rIleHisAlaThrIleAlaIleMetCysSerValThrMetGlnIleSerSerAspIleLeuAsn 600 : GATCCACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaat : 662 162 : MetLeuTyrPheGlnHisAlaCysGlyMetPheMetIle : 174 ::::::.....!||| ! !!||||||||| !:!! AsnIlePheMetMetHisIleSerGlyMetPheGluVal 663 : aacatatttatGATGCACATCAGTGGAATGTTCGAGGTA : 703 vulgar: CbirOr467IC 97 174 . LHQN01050134.1 475 703 + 106 M 10 30 G 1 0 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 476 703 106 + . gene_id 1 ; sequence CbirOr467IC ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 476 703 . + . LHQN01050134.1 exonerate:protein2genome:local exon 476 703 . + . insertions 0 ; deletions 1 LHQN01050134.1 exonerate:protein2genome:local similarity 476 703 106 + . alignment_id 1 ; Query CbirOr467IC ; Align 476 98 30 ; Align 506 109 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr477 Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 213 Query range: 165 -> 292 Target range: 357473 -> 358105 166 : SerTrpLeuProIleValAlaGluTyrPheValAspGlnGluArgTyrPheTyrValI : 185 ||| ||| !.!!..! !!!:||||||||||||...|||:::||||||||||||! SerAsnLeuTyrPheThrIleAspTyrPheValAspAspGluLysTyrPheTyrValL 357474 : TCGAATCTATACTTCACCATAGACTACTTCGTCGACgacgaaaaatacttttacgTCA : 357531 186 : leValIleHisIlePheIleValLeuTyrAlaGlyCysMetValLeuValAlaSerGl : 204 !!:!!|||:!:!:!:!! !!!!! ! !||| !!! |||:!!:!!!.!|||! ysPheLeuHisValTyrLeuTyrPheSerLeuGlySerThrValIleLeuGlySerGl 357532 : AGTTCTTACATGTGTATCTATATTTTTCCCTCGGAAGTACAGTCATTCTAGGATCAGA : 357588 205 : yGlyMetIleLeuGlyTyrValMetHisAsnCysAlaIlePheLysIleAla{Il} : 222 !! !! ! !:!! !!:!!.!! ! ! !!.!:!!!:!:!!:!!!.!{ } uValThrThrIleMetPheAlaAsnPheAlaSerGlyLeuTyrGlnValVal{Cy}++ 357589 : AGTAACAACTATTATGTTCGCTAATTTTGCGTCTGGGTTATATCAGGTAGTG{TG}gt : 357644 223 : >>>> Target Intron 1 >>>> {e}TyrArgIleGluHisIlePheAspGluL : 232 173 bp {!}|||||| !..! !:!!|||..!:!!| ++{s}TyrArgAlaArgSerValPheSerLysL 357645 : .........................ag{T}TATCGCGCAAGGTCTGTATTTAGTAAGA : 357845 233 : ysIleLeuGlnMetSerLysHisValArgGluTyrValLeuTyrGluArgLeuIleHi : 251 ||:!:|||.!. |||!.. !|||!!: !|||:!!:!!|||!:!|||:!!.! ysValLeuAsnAlaSerSerThrSerArgAspSerValValHisGluLysLeuValGl 357846 : AAGTGTTGAATGCCTCAAGCACGTCAAGAGATAGTGTAGTGCACGAAAAATTGGTTGA : 357902 252 : sAlaValHisLeuHisArgArgAlaVal{As} >>>> Target Intron 2 >>> : 261 .!.!||| ! :!!|||||||||||||||{||} 78 bp uValValLysMetHisArgArgAlaVal{As}++ 357903 : AGTTGTGAAAATGCACAGACGAGCGGTG{GA}gt........................ : 357936 262 : > {p}LeuAlaAsnIleLeuThrAsnSerLeuAlaThrValTyrPheIleLeuLeuI : 279 {|}!!!..!|||:!!||| !.!.|||!!!!.!:!! !||||||:!!||||||: ++{p}PheCysAsnLeuLeuGlyGluSerPheGlySerSerTyrPheLeuLeuLeuL 357937 : .ag{C}TTTTGCAATCTTTTGGGGGAATCCTTTGGATCTTCGTATTTTTTATTGCTCC : 358064 280 : leCysGlyValAlaSerThrSerPheSerValPheHisLeu : 292 !:! |||||||||!!!||||||.!!!:!:!! ! |||:!! euLeuGlyValAlaCysThrSerIleAsnLeuValHisVal 358065 : TGTTAGGAGTGGCGTGTACAAGTATCAATCTTGTACATGTA : 358105 vulgar: CbirOr477 165 292 . KQ414693.1 357473 358105 + 213 M 56 168 S 0 2 5 0 2 I 0 169 3 0 2 S 1 1 M 38 114 S 0 2 5 0 2 I 0 74 3 0 2 S 1 1 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 357474 358105 213 + . gene_id 1 ; sequence CbirOr477 ; gene_orientation + KQ414693.1 exonerate:protein2genome:local cds 357474 357643 . + . KQ414693.1 exonerate:protein2genome:local exon 357474 357643 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local splice5 357644 357645 . + . intron_id 1 ; splice_site "GT" KQ414693.1 exonerate:protein2genome:local intron 357644 357816 . + . intron_id 1 KQ414693.1 exonerate:protein2genome:local splice3 357815 357816 . + . intron_id 0 ; splice_site "AG" KQ414693.1 exonerate:protein2genome:local cds 357817 357933 . + . KQ414693.1 exonerate:protein2genome:local exon 357817 357933 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local splice5 357934 357935 . + . intron_id 2 ; splice_site "GT" KQ414693.1 exonerate:protein2genome:local intron 357934 358011 . + . intron_id 2 KQ414693.1 exonerate:protein2genome:local splice3 358010 358011 . + . intron_id 1 ; splice_site "AG" KQ414693.1 exonerate:protein2genome:local cds 358012 358105 . + . KQ414693.1 exonerate:protein2genome:local exon 358012 358105 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 357474 358105 213 + . alignment_id 1 ; Query CbirOr477 ; Align 357474 166 168 ; Align 357818 223 114 ; Align 358013 262 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr483INT Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 90 -> 195 Target range: 357446 -> 357934 91 : LeuProLeuLysAlaSerArgSerArgSerAlaMetGlnValValThrGluTyrPheI : 110 ||| !|||!.. !!!!..!||| !||| !:!: ! !!..!! !!!:||||||: LeuAsnLeuSerIleCysGluSerSerSerAsnLeuTyrPheThrIleAspTyrPheV 357447 : TTGAATTTAAGTATTTGCGAATCGTCTTCGAATCTATACTTCACCATAGACTACTTCG : 357504 111 : leAspGlnGluLysTyrPheTyrLeuIleLeuLeuHisMetAsnValThrIleTyrIl : 129 !!|||...|||||||||||||||:!!! !!!||||||:!! !!:!! !.!!! !:! alAspAspGluLysTyrPheTyrValLysPheLeuHisValTyrLeuTyrPheSerLe 357505 : TCGACgacgaaaaatacttttacgTCAAGTTCTTACATGTGTATCTATATTTTTCCCT : 357561 130 : eGlyAlaThrAlaValIleAlaThrGlyThrMetLeuMetGlyTyrLeuLysHisIle : 148 !|||::!|||!.!:!!:!!!.!:!!! !..!! !!!: !!:! !!!. ! uGlySerThrValIleLeuGlySerGluValThrThrIleMetPheAlaAsnPheAla 357562 : CGGAAGTACAGTCATTCTAGGATCAGAAGTAACAACTATTATGTTCGCTAATTTTGCG : 357618 149 : CysGlyMetPheSerIleAla{Ar} >>>> Target Intron 1 >>>> {g}T : 157 ! !|||:!:!:!..!:!!!.!{ !} 173 bp {!}| SerGlyLeuTyrGlnValVal{Cy}++ ++{s}T 357619 : TCTGGGTTATATCAGGTAGTG{TG}gt.........................ag{T}T : 357818 158 : yrArgIleGluGlnAlaMetLysPheAspThrLeuGlnAsnThrGlyLeuGluAspGl : 176 ||||| !..!...!.!.!.!.. ! ..!|||.!. !:!!.!! !..! !! yrArgAlaArgSerValPheSerLysLysValLeuAsnAlaSerSerThrSerArgAs 357819 : ATCGCGCAAGGTCTGTATTTAGTAAGAAAGTGTTGAATGCCTCAAGCACGTCAAGAGA : 357875 177 : uAsnValIleTyrLysLysLeuIleTyrAlaValAspIleHisArgLysAlaIleGlu : 195 :!:!|||:!::!!:!!||||||:!! ! !.!||| ! !!:||||||::!|||:!:||| pSerValValHisGluLysLeuValGluValValLysMetHisArgArgAlaValGlu 357876 : TAGTGTAGTGCACGAAAAATTGGTTGAAGTTGTGAAAATGCACAGACGAGCGGTGGAG : 357932 vulgar: CbirOr483INT 90 195 . KQ414693.1 357446 357934 + 144 M 65 195 S 0 2 5 0 2 I 0 169 3 0 2 S 1 1 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 357447 357934 144 + . gene_id 1 ; sequence CbirOr483INT ; gene_orientation + KQ414693.1 exonerate:protein2genome:local cds 357447 357643 . + . KQ414693.1 exonerate:protein2genome:local exon 357447 357643 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local splice5 357644 357645 . + . intron_id 1 ; splice_site "GT" KQ414693.1 exonerate:protein2genome:local intron 357644 357816 . + . intron_id 1 KQ414693.1 exonerate:protein2genome:local splice3 357815 357816 . + . intron_id 0 ; splice_site "AG" KQ414693.1 exonerate:protein2genome:local cds 357817 357934 . + . KQ414693.1 exonerate:protein2genome:local exon 357817 357934 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 357447 357934 144 + . alignment_id 1 ; Query CbirOr483INT ; Align 357447 91 195 ; Align 357818 157 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr488 Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 337 -> 382 Target range: 358648 -> 358783 338 : TyrAsnIleArgTrpTyrThrAlaProValArgIleGlnArgLeuIleLeuPheLeuL : 357 |||!:! ! !!|||||||||||| !!|||! ! !|||!:! !:!:|||!:!:!!: TyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuLeuTyrIleM 358649 : TACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGTTATACATCA : 358706 358 : euGlnArgSerCysLysIleTyrGlyLeuLysIleGlyGlyLeuPheIleAlaSerLe : 376 !!|||!.!||| :!! !|||..!!!!..!|||||||||||||||:!: !!|||! etGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheValProSerTy 358707 : TGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGTGCCGAGTTA : 358763 377 : uGluGlyPheAlaSerLeu : 382 !:!!||||||:!!!!!:!! rGlnGlyPheSerThrVal 358764 : CCAAGGATTTTCTACGGTA : 358783 vulgar: CbirOr488 337 382 . KQ414693.1 358648 358783 + 111 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358649 358783 111 + . gene_id 1 ; sequence CbirOr488 ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 358649 358783 . + . KQ414693.1 exonerate:protein2genome:local exon 358649 358783 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358649 358783 111 + . alignment_id 1 ; Query CbirOr488 ; Align 358649 338 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr490PSE Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 332 -> 377 Target range: 358648 -> 358783 333 : TyrSerIleGlnTrpTyrThrAlaProIleArgIleGlnLysPheIleLeuPheLeuL : 352 |||||| ! !|||||||||||| !!:!:! ! !|||||| :!:|||!:!:!!: TyrSerSerGlyTrpTyrThrAlaSerValProAlaGlnLysThrLeuLeuTyrIleM 358649 : TACAGCTCTGGATGGTATACTGCATCAGTGCCTGCACAAAAAACACTGTTATACATCA : 358706 353 : euGlnArgSerCysLysMetHisPheIleLysIleGlyGlyLeuPheIleThrSerLe : 371 !!|||!.!||| :!! :!! !.!!..!|||||||||||||||:!: !!|||! etGlnHisSerIleGlnAspTyrAsnPheSerIleGlyGlyLeuPheValProSerTy 358707 : TGCAACACTCCATACAAGATTACAACTTCTCGATCGGAGGTCTGTTTGTGCCGAGTTA : 358763 372 : uGluGlyPheAlaSerLeu : 377 !:!!||||||:!!!!!:!! rGlnGlyPheSerThrVal 358764 : CCAAGGATTTTCTACGGTA : 358783 vulgar: CbirOr490PSE 332 377 . KQ414693.1 358648 358783 + 107 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 358649 358783 107 + . gene_id 1 ; sequence CbirOr490PSE ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 358649 358783 . + . KQ414693.1 exonerate:protein2genome:local exon 358649 358783 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 358649 358783 107 + . alignment_id 1 ; Query CbirOr490PSE ; Align 358649 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr481 Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 165 -> 214 Target range: 887621 -> 887768 166 : ThrGluTyrPheIleAspGlnGluLysTyrPheTyrLeuIleLeuValHisMetTyrA : 185 ..!|||||| !||||||...||||||||||||||||||||| !!.!||| |||| ValGluTyrHisIleAspSerGluLysTyrPheTyrLeuIleThrAlaHisCysTyrA 887622 : GTGGAGTACCACATCgacagtgaaaaatatttttacctgATTACAGCTCATTGTTACG : 887679 186 : laAlaLeuTyrValGlyAlaAlaAlaMetValSerThrGlyAlaMetSerValValTy : 204 ||:!! ! :!! ! ! ! !! ||| ! !! !.!!|||! !:!!||| laSerThrValLeuLeuLeuLeuGlnThrValValHisAspThrMetTyrIleValLe 887680 : CCTCGACAGTACTTCTTCTGCTTCAAACTGTCGTACACGACACAATGTACATTGTTCT : 887736 205 : rPheGlnHisValCysGlyMetPheLysVal : 214 !!||||||! !|||!.!:!:||| !||| uValGlnHisGlyCysAlaLeuPheAlaVal 887737 : GGTCCAACATGGCTGCGCTTTATTCGCAGTT : 887768 vulgar: CbirOr481 165 214 . KQ414735.1 887621 887768 + 105 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 887622 887768 105 + . gene_id 1 ; sequence CbirOr481 ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 887622 887768 . + . KQ414735.1 exonerate:protein2genome:local exon 887622 887768 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 887622 887768 105 + . alignment_id 1 ; Query CbirOr481 ; Align 887622 166 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr481 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 121 -> 215 Target range: 33694 -> 33415 122 : TyrThrLysValLeuThrIlePheSerIlePheGlyValPheGlyLeuIleSerValPro : 141 ::::::... ...||| ! !.!!:!:||| !! !.!! !!!!! !|||!.!||| PheSerSerAsnPheThrAlaAsnGlyValPheCysTyrIleMetPheSerSerAlaPro 33694 : ttttcttcaaatttcacagCAAACGGAGTGTTTTGCTACATCATGTTCAGCTCGGCGCCT : 33637 142 : IleLeuProHisIleIleAspValSerTrpProAlaAsnLysSerArgArgCysSerSer : 161 .!!:!!||||||.!!|||||||||:!!! ! !! !|||:!!||||||!:!! ||| PheIleProHisPheIleAspValAlaLeuSerLysAsnGluSerArgLysLeu---Ser 33636 : TTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAACGAGTCACGAAAATTA---AGT : 33580 162 : SerGlnIleLeuThrGluTyrPheIleAspGlnGluLysTyrPheTyrLeuIleLeuVal : 181 ! !..! !! !.!! ! ||| !|||||||||!::||||||:::||| ::::::!.! LeuMetTyrProAlaTyrTyrGlyIleAspGlnAspLysTyrTyrTyrTyrLeuMetAla 33579 : TTGATGTACCCTGCCTATTACGGCATTGACCAGGacaagtattattattatctaatgGCT : 33520 182 : HisMetTyrAlaAlaLeuTyrValGlyAlaAlaAlaMetValSerThrGlyAlaMetSer : 201 |||||| ::!||| ! !.!! ! ! !!.!.!.:!!||| !! !.!!!!:! ! HisMetMetSerAlaGlyAlaAlaValPhePheValPheMetSerCysAspThrIleTyr 33519 : CACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATGTCCTGCGACACGATTTAT : 33460 202 : ValValTyrPheGlnHisValCysGlyMetPheLysValAla : 215 :!! ! ! !!||||||!.!||||||:!!!!. :!!:!! MetAsnIleValGlnHisAlaCysGlyLeuLeuPheIleSer 33459 : ATGAATATCGTTCAACACGCGTGCGGATTGTTGTTCATTTCC : 33416 vulgar: CbirOr481 121 215 . KQ414772.1 33694 33415 - 115 M 38 114 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33416 33694 115 - . gene_id 1 ; sequence CbirOr481 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33416 33694 . - . KQ414772.1 exonerate:protein2genome:local exon 33416 33694 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 33416 33694 115 - . alignment_id 1 ; Query CbirOr481 ; Align 33695 122 114 ; Align 33581 161 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr481 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 124 -> 215 Target range: 42745 -> 42475 125 : ValLeuThrIlePheSerIlePheGlyValPheGlyLeuIleSerValProIleLeuPro : 144 :::...|||:!! !.!!|||! ! !! !! !!!!||||||!.!||| !:!!||| IlePheThrValThrGlyIleCysCysPheThrMetPheIleSerAlaProTyrIlePro 42745 : attttcacagTAACTGGAATATGTTGCTTCACAATGTTTATCTCTGCGCCTTATATACCG : 42688 145 : HisIleIleAspValSerTrpProAlaAsnLysSerArgArgCysSerSerSerGlnIle : 164 |||:!! !||||||! !! !! !|||:!!||||||!:!! .!!! !! ! ! HisValTyrAspValMetLeuSerLysAsnGluSerArgLysLeuGlyPheIle---Tyr 42687 : CATGTATATGATGTTATGTTATCGAAAAACGAGTCACGAAAGTTGGGTTTCATT---TAC : 42631 165 : LeuThrGluTyrPheIleAspGlnGluLysTyrPheTyrLeuIleLeuValHisMetTyr : 184 ! !.!! ! ||| !:!!||||||!!:||||||!:!|||! !|||:!!!.!|||||| ProAlaTyrTyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAlaHisMetThr 42630 : CCTGCCTATTATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCTCACATGACA : 42571 185 : AlaAlaLeuTyrValGlyAlaAlaAlaMetValSerThrGlyAlaMetSerValValTyr : 204 :!!!.! !! |||! ! ! !.!!.!.:!!||| !! !.!!!!:! !:!! ! ! SerGlyGlyLeuValValPhePheThrPheIleSerCysAspThrIleTyrMetAsnIle 42570 : TCTGGGGGCTTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTACATGAATATC : 42511 205 : PheGlnHisValCysGlyMetPheLysValAla : 215 ! ||||||!.!||||||:!!!!. !:!!:!! ValGlnHisAlaCysGlyLeuLeuLeuIleSer 42510 : GTGCAACACGCGTGCGGATTGTTGTTGATTTCT : 42476 vulgar: CbirOr481 124 215 . KQ414772.1 42745 42475 - 112 M 38 114 G 1 0 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42476 42745 112 - . gene_id 2 ; sequence CbirOr481 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42476 42745 . - . KQ414772.1 exonerate:protein2genome:local exon 42476 42745 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 42476 42745 112 - . alignment_id 2 ; Query CbirOr481 ; Align 42746 125 114 ; Align 42632 164 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr481 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 122 -> 220 Target range: 14172 -> 13881 123 : ThrLysValLeuThrIlePheSerIlePheGlyValPheGlyLeuIleSerValProIle : 142 ..!||| !! !! !:!: !:!!||| !! !!|||.!! !!!!:!:!!!..!|||:!: ValLysTyrSerIleValAsnAlaIleValCysValIleLeuPheValThrThrProVal 14172 : GTCAAATATTCGATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGACCACGCCGGTG : 14115 143 : LeuProHisIleIleAspValSerTrpProAlaAsnLysSerArgArgCysSerSerSer : 162 !|||||||||:!:|||:!!! ! ||| !|||:!!|||||| ! :!!! !! ! ThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIle 14114 : ACACCGCATATTTTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATT : 14055 163 : GlnIleLeuThrGluTyrPheIleAspGlnGluLysTyrPheTyrLeuIleLeuValHis : 182 !! !.!! ! ||||||! !|||:!!.!.|||||| ! ! !|||:!!..!||| ---TyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHis 14054 : ---TACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCAC : 13998 183 : MetTyrAlaAlaLeuTyrValGlyAlaAlaAlaMetValSerThrGlyAlaMetSerVal : 202 ||| :!!!.!:!! !|||! ! ! !!.! |||:!! !! !.!!! ! !:!! MetAlaSerValIleLeuValValPheTyrValTyrValAlaCysAspThrSerTyrIle 13997 : ATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATA : 13938 203 : ValTyrPheGlnHisValCysGlyMetPheLysValAlaSerTyrArgIleLys : 220 ! ! ! ||||||! !||||||:!!!!. |||:!!.!. :::|||::: TyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly***LysIleArg 13937 : TACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaattcga : 13882 vulgar: CbirOr481 122 220 . KQ414772.1 14172 13881 - 110 M 40 120 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13882 14172 110 - . gene_id 3 ; sequence CbirOr481 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13882 14172 . - . KQ414772.1 exonerate:protein2genome:local exon 13882 14172 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 13882 14172 110 - . alignment_id 3 ; Query CbirOr481 ; Align 14173 123 120 ; Align 14053 164 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr496PSE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 121 -> 201 Target range: 45985 -> 45745 122 : PheThrIleTyrPheSerIleLeuValTyrIleMetThrSerAlaPheIleIleValPro : 141 !!.:!!|||:!! !|||:!! !:!!|||||| ..!|||!.!||| !! !!.!||| LeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThrAlaPro 45985 : TTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCC : 45928 142 : LeuThrProIlePheLeuAspPheMetLeuProLeuAsnGluSerArgProArgPhePhe : 161 |||! !|||.!!.!!||||||.!.!!:! !||||||||||||||||||||||||!!.!:! LeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArgLeuTyr 45927 : CTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTAC : 45868 162 : AlaIleGluIleGluPheArgLeuAspLysAsnGluTyrPheLeuProLeuTyrPheTyr : 181 ||| !:!! ! ! ! ! !!!!:!! !:!!!!:|||!:!! ! !:!! ||| AlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValValGlyTyr 45867 : GCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTGGGGTAC : 45808 182 : ThrThrThrAlaIleValValGlyIleThrIleValValAlaValAspAlaMetHisIle : 201 |||!:!.!!..!|||! !:!!!.! ! !:!::!!|||!.!!.!||| !!!: ||| ThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAlaAspIleIleMetIle 45807 : ACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATTATGATA : 45748 vulgar: CbirOr496PSE 121 201 . KQ414772.1 45985 45745 - 130 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45746 45985 130 - . gene_id 1 ; sequence CbirOr496PSE ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45746 45985 . - . KQ414772.1 exonerate:protein2genome:local exon 45746 45985 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45746 45985 130 - . alignment_id 1 ; Query CbirOr496PSE ; Align 45986 122 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr477 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 132 -> 221 Target range: 14166 -> 13896 133 : PheThrLeuLeuAlaThrSerValCysLeuGlyIleValValLeuCysSerVal<->Pro : 151 !:!:!!:!!:!! !.!!! !||||||:!! !:!: !!||| ! !!||| ||| TyrSerIleValAsnAlaIleValCysValIleLeuPheValThrThrProValThrPro 14166 : TATTCGATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGACCACGCCGGTGACACCG : 14109 152 : SerIleLeuAspIleIleIleProLeuAsnGluSerArgProSerTrpLeuProIleVal : 171 !||||||||||||:!!:!!||| !|||||||||||| ! ! !! ! ! ! ! HisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrPro 14108 : CATATTTTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCG : 14049 172 : AlaGluTyrPheValAspGlnGluArgTyrPheTyrValIleValIleHisIlePheIle : 191 ||| ! ||||||..!|||:!!.!.!:!||| ! !|||:!!! |||!!: ! AlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSer 14048 : GCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCC : 13989 192 : ValLeuTyrAlaGlyCysMetValLeuValAlaSerGlyGlyMetIleLeuGlyTyrVal : 211 |||:!! !!.!! !! ! |||! !||||||!!!! ! !! !:!! ! !||| ValIleLeuValValPheTyrValTyrValAlaCysAspThrSerTyrIleTyrValVal 13988 : GTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTG : 13929 212 : MetHisAsnCysAlaIlePheLysIleAla : 221 ...|||..!|||!.!:!:!!. :!::!! GlnHisGlyCysGlyLeuLeuAlaValSer 13928 : CAACACGGCTGCGGATTGTTGGCCGTGTCC : 13897 vulgar: CbirOr477 132 221 . KQ414772.1 14166 13896 - 107 M 18 54 G 0 3 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13897 14166 107 - . gene_id 1 ; sequence CbirOr477 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13897 14166 . - . KQ414772.1 exonerate:protein2genome:local exon 13897 14166 . - . insertions 3 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13897 14166 107 - . alignment_id 1 ; Query CbirOr477 ; Align 14167 133 54 ; Align 14110 151 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr495 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 134 Query range: 108 -> 221 Target range: 14217 -> 13878 109 : AlaArgIleLeuLysAsnTyrSerAsnIleAlaHisLysPheThrIleLeuTyrSerVal : 128 !.!||| !! ! !||| !!..!!.!:!! ! !! !!:!! !:!! !||||||:!! GlyArgSerTyrLeuAsnAspGlnThrValTyrPheThrTyrIleValLysTyrSerIle 14217 : GGCAGATCTTATTTAAACGACCAAACTGTTTATTTTACGTACATTGTCAAATATTCGATA : 14160 129 : ThrLeuTyrSerMetValThrMetPheIleIleIleProSerValGlyProMetPheLeu : 148 ..! ! ! !:!: !..!!!:.!..!!:!:! ! !! !!||| !||| .!!||| ValAsnAlaIleValCysValIleLeuPheValThrThrProValThrProHisIleLeu 14159 : GTGAACGCGATCGTTTGTGTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATTTTG : 14100 149 : AspValValLeuProLeuAsnGluSerArgSerArgAsnPheAlaValTyrAlaGluTyr : 168 |||:!!:!!|||||| !||||||||||||..! ! !:! ! ! ||| ! ||| AspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyr 14099 : GACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTAT : 14040 169 : GlyIleAspGlnAsnArgTyrPheValSerIleLeuLeuTyrThrSerValMetIleVal : 188 !! !|||:!!:!!!:!||| !|||! !|||:!! !:!!! !:!! !:!!|||:!! PheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeu 14039 : TTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTT : 13980 189 : ValGlyValSerIleMetValAlaValAspThrMetHisValAlaCysThrAlaHisAla : 208 |||! ! !!! !:!: |||||| !||||||! :!!:!! ! !..! !|||!.! ValValPheTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGly 13979 : GTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGC : 13920 209 : CysSerLeuPheGlnLeuIleGlyArgGlnIleGluAsn : 221 |||.!!|||!!. :!! !||| :::|||...::: CysGlyLeuLeuAlaValSerGly***LysIleArgSer 13919 : TGCGGATTGTTGGCCGTGTCCGGgtaaaaaattcgatcg : 13879 vulgar: CbirOr495 108 221 . KQ414772.1 14217 13878 - 134 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13879 14217 134 - . gene_id 1 ; sequence CbirOr495 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13879 14217 . - . KQ414772.1 exonerate:protein2genome:local exon 13879 14217 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13879 14217 134 - . alignment_id 1 ; Query CbirOr495 ; Align 14218 109 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr495 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 121 -> 202 Target range: 45985 -> 45745 122 : PheThrIleLeuTyrSerValThrLeuTyrSerMetValThrMetPheIleIleIlePro : 141 !!.:!!|||! ! !|||||||||:!!|||! ! |||:!!:!!||| !! ! ||| LeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThrAlaPro 45985 : TTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCC : 45928 142 : SerValGlyProMetPheLeuAspValValLeuProLeuAsnGluSerArgSerArgAsn : 161 !:!! |||.!..!!||||||:!!:!!! !|||||||||||||||||| !!||| LeuIle---ProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArgLeu 45927 : CTCATA---CCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTG : 45871 162 : PheAlaValTyrAlaGluTyrGlyIleAspGlnAsnArgTyrPheValSerIleLeuLeu : 181 !:!||| ! ! ||| ! ! ! !.!!:!!! !:!! !|||!:! !! !:!!:!! ! TyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValValGly 45870 : TACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTGGGG : 45811 182 : TyrThrSerValMetIleValValGlyValSerIleMetValAlaValAspThrMetHis : 201 |||||||||!.! |||! !:!!!.!! ! !:!::!:|||!.!!.!|||! !!!: TyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAlaAspIleIleMet 45810 : TACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATTATG : 45751 202 : Val : 202 :!! Ile 45750 : ATA : 45746 vulgar: CbirOr495 121 202 . KQ414772.1 45985 45745 - 101 M 22 66 G 1 0 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45746 45985 101 - . gene_id 2 ; sequence CbirOr495 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45746 45985 . - . KQ414772.1 exonerate:protein2genome:local exon 45746 45985 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 45746 45985 101 - . alignment_id 2 ; Query CbirOr495 ; Align 45986 122 66 ; Align 45920 145 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr497IC Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 121 -> 201 Target range: 45985 -> 45745 122 : PheThrIleTyrPheSerIleLeuLeuTyrIleMetSerSerAlaPheIleIleValPro : 141 !!.:!!|||:!! !|||:!! !:!!|||||| !|||!.!||| !! !!.!||| LeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThrAlaPro 45985 : TTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCC : 45928 142 : LeuLysProIlePheLeuAspIleIleLeuProLeuAsnGluSerArgProArgPhePhe : 161 |||! !|||.!!.!!||||||:!!|||! !||||||||||||||||||||||||!!.!:! LeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArgLeuTyr 45927 : CTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTAC : 45868 162 : AlaIleGluLeuGluCysArgLeuAspLysAsnGluHisPheLeuLeuLeuTyrPheTyr : 181 ||| !:!! ! ! ||| !!!!:!! !:!!!!::!!!:!! !! !:!! ||| AlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValValGlyTyr 45867 : GCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTGGGGTAC : 45808 182 : ThrThrThrIleIleValValGlyIleThrIleIleValAlaIleAspThrValTyrVal : 201 |||!:!.!! !|||! !:!!!.! ! !:!::!!|||!.! !|||! !:!! :!! ThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAlaAspIleIleMetIle 45807 : ACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATTATGATA : 45748 vulgar: CbirOr497IC 121 201 . KQ414772.1 45985 45745 - 139 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45746 45985 139 - . gene_id 1 ; sequence CbirOr497IC ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45746 45985 . - . KQ414772.1 exonerate:protein2genome:local exon 45746 45985 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45746 45985 139 - . alignment_id 1 ; Query CbirOr497IC ; Align 45986 122 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr497IC Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 136 -> 212 Target range: 14130 -> 13902 137 : PheIleIleValProLeuLysProIlePheLeuAspIleIleLeuProLeuAsnGluSer : 156 |||:!:! !..!|||:!!! !||| !.!!|||||||||:!!|||||| !||||||||| PheValThrThrProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSer 14130 : TTCGTGACCACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAGAACGAGTCA : 14073 157 : ArgProArgPhePheAlaIleGluLeuGluCysArgLeuAspLysAsnGluHisPheLeu : 176 ||| ! ! !:! ! ! ! ! ! ! ! ! !|||:!!:!!:!!:!! !:!! ArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspVal 14072 : CGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTG : 14013 177 : LeuLeuTyrPheTyrThrThrThrIleIleValValGlyIleThrIleIleValAlaIle : 196 ! !:!! ! :!!! !.!!:!!:!:|||:!!|||! !.!! !:!: !|||||| ! TyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrValAlaCys 14012 : TACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGT : 13953 197 : AspThrValTyrValIleSerThrThrHisAlaCysSerLeuPheAla : 212 |||||| !|||:!! ! !..! !|||!.!|||.!!|||!!.||| AspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAla 13952 : GACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCC : 13903 vulgar: CbirOr497IC 136 212 . KQ414772.1 14130 13902 - 114 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13903 14130 114 - . gene_id 2 ; sequence CbirOr497IC ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13903 14130 . - . KQ414772.1 exonerate:protein2genome:local exon 13903 14130 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13903 14130 114 - . alignment_id 2 ; Query CbirOr497IC ; Align 14131 137 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr497IC Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 121 -> 201 Target range: 33732 -> 33492 122 : PheThrIleTyrPheSerIleLeuLeuTyrIleMetSerSerAlaPheIleIleValPro : 141 !!.:!!|||:!! !|||:!! !:!!|||||| !|||!.!||| !! !!.!||| LeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThrAlaPro 33732 : TTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCC : 33675 142 : LeuLysProIlePheLeuAspIleIleLeuProLeuAsnGluSerArgProArgPhePhe : 161 |||! !|||.!!.!!||||||:!!|||! !||||||||||||||||||||||||!!.!:! LeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArgLeuTyr 33674 : CTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTAC : 33615 162 : AlaIleGluLeuGluCysArgLeuAspLysAsnGluHisPheLeuLeuLeuTyrPheTyr : 181 ||| !:!! ! ! ||| !!!!:!! !:!!!!::!!!:!! !! !:!! ||| AlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValValGlyTyr 33614 : GCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTGGGGTAC : 33555 182 : ThrThrThrIleIleValValGlyIleThrIleIleValAlaIleAspThrValTyrVal : 201 |||!:!.!! !|||! !:!!!.! ! !:!::!!|||!.! !|||! !:!! :!! ThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAlaAspIleIleMetIle 33554 : ACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATTATGATA : 33495 vulgar: CbirOr497IC 121 201 . LHQN01017803.1 33732 33492 - 139 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33493 33732 139 - . gene_id 1 ; sequence CbirOr497IC ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33493 33732 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33493 33732 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33493 33732 139 - . alignment_id 1 ; Query CbirOr497IC ; Align 33733 122 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr497IC Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 121 -> 212 Target range: 26270 -> 25997 122 : PheThrIleTyrPheSerIleLeuLeuTyrIleMetSerSerAlaPheIleIleValPro : 141 !:! !! !:! !!!:!:! !:!!! :!! :!!:!! !|||!!: !:!!||| TyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuPro 26270 : TATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCG : 26213 142 : LeuLysProIlePheLeuAspIleIleLeuProLeuAsnGluSerArgProArgPhePhe : 161 !!! ! !! .!!|||||||||:!!:!!||||||||||||!!!||| !!|||!!.||| PheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPhe 26212 : TTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTC : 26153 162 : AlaIleGluLeuGluCysArgLeuAspLysAsnGluHisPheLeuLeuLeuTyrPheTyr : 181 !.! ! ! ! ! ! ! !:!!|||:!!:!!:!!:!! !! !|||:!! :!! ValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHis 26152 : GTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCAT : 26093 182 : ThrThrThrIleIleValValGlyIleThrIleIleValAlaIleAspThrValTyrVal : 201 ! ! ! !:!!:!:|||:!! !|||:!!:!!.!! !||| !|||.!! !|||||| MetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrVal 26092 : ATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTG : 26033 202 : IleSerThrThrHisAlaCysSerLeuPheAla : 212 !:!!..! !|||||||||.!!|||!!.||| TyrAlaValGlnHisAlaCysGlyLeuLeuAla 26032 : TACGCCGTGCAACACGCTTGCGGATTGTTGGCC : 25998 vulgar: CbirOr497IC 121 212 . LHQN01017803.1 26270 25997 - 126 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25998 26270 126 - . gene_id 2 ; sequence CbirOr497IC ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25998 26270 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25998 26270 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25998 26270 126 - . alignment_id 2 ; Query CbirOr497IC ; Align 26271 122 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr497IC Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 136 -> 212 Target range: 14167 -> 13939 137 : PheIleIleValProLeuLysProIlePheLeuAspIleIleLeuProLeuAsnGluSer : 156 |||:!: ..!|||:!!! !||| !.!!|||||||||:!!|||||| !||||||||| PheValSerThrProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSer 14167 : TTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAGAACGAGTCA : 14110 157 : ArgProArgPhePheAlaIleGluLeuGluCysArgLeuAspLysAsnGluHisPheLeu : 176 ||| ! ! !:! ! ! ! ! ! ! ! ! !|||:!!:!!:!!:!! !:!! ArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspVal 14109 : CGAGACGTAGCGTACATTTATCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTG : 14050 177 : LeuLeuTyrPheTyrThrThrThrIleIleValValGlyIleThrIleIleValAlaIle : 196 ! !:!! ! :!!! !.!!:!!:!:|||:!!|||! !.!! !:!: !|||||| ! TyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrValAlaCys 14049 : TACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGT : 13990 197 : AspThrValTyrValIleSerThrThrHisAlaCysSerLeuPheAla : 212 |||||| !|||:!! ! !..! !|||!.!|||.!!|||!!.||| AspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAla 13989 : GACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCC : 13940 vulgar: CbirOr497IC 136 212 . LHQN01017803.1 14167 13939 - 113 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13940 14167 113 - . gene_id 3 ; sequence CbirOr497IC ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13940 14167 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13940 14167 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13940 14167 113 - . alignment_id 3 ; Query CbirOr497IC ; Align 14168 137 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr477 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 127 -> 221 Target range: 26273 -> 25991 128 : PheHisThrThrLeuPheThrLeuLeuAlaThrSerValCysLeuGlyIleValValLeu : 147 |||:!! !|||!!! |||:!!! ! !:!!! ! !..! ! !.!!:!! !||| PheTyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeu 26273 : TTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTG : 26216 148 : CysSerValProSerIleLeuAspIleIleIleProLeuAsnGluSerArgProSerTrp : 167 ! !||| !! !!||||||||||||:!!!!:||||||||||||!!!||| !! !!! ! ProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeu 26215 : CCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTG : 26156 168 : LeuProIleValAlaGluTyrPheValAspGlnGluArgTyrPheTyrValIleValIle : 187 !!! ! ! !||| ! ||||||||||||:!!!!:!:!||| !|||:!!|||||| PheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGly 26155 : TTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGG : 26096 188 : HisIlePheIleValLeuTyrAlaGlyCysMetValLeuValAlaSerGlyGlyMetIle : 207 |||!!:!:!:!!|||:!! ! ! ! |||!!! !|||!!!! !!.!! ! HisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyr 26095 : CATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTAC : 26036 208 : LeuGlyTyrValMetHisAsnCysAlaIlePheLysIleAla : 221 :!! ! !|||...||| !|||!.!:!:!!. |||||| ValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla 26035 : GTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCA : 25992 vulgar: CbirOr477 127 221 . LHQN01017803.1 26273 25991 - 130 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25992 26273 130 - . gene_id 1 ; sequence CbirOr477 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25992 26273 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25992 26273 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25992 26273 130 - . alignment_id 1 ; Query CbirOr477 ; Align 26274 128 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr477 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 149 -> 221 Target range: 14149 -> 13933 150 : ValProSerIleLeuAspIleIleIleProLeuAsnGluSerArgProSerTrpLeuPro : 169 ..!||| !||||||||||||:!!:!!||| !|||||||||||| ! ! !! ! ! ThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIle 14149 : ACACCGCATATTTTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATT : 14092 170 : IleValAlaGluTyrPheValAspGlnGluArgTyrPheTyrValIleValIleHisIle : 189 ! !||| ! ||||||..!|||:!!.!.!:!||| ! !|||:!!! |||!!: TyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMet 14091 : TATCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATG : 14032 190 : PheIleValLeuTyrAlaGlyCysMetValLeuValAlaSerGlyGlyMetIleLeuGly : 209 !|||:!! !!.!! !! ! |||! !||||||!!!! ! !! !:!! ! AlaSerValIleLeuValValPheTyrValTyrValAlaCysAspThrSerTyrIleTyr 14031 : GCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATATAC : 13972 210 : TyrValMetHisAsnCysAlaIlePheLysIleAla : 221 !|||...|||..!|||!.!:!:!!. :!::!! ValValGlnHisGlyCysGlyLeuLeuAlaValSer 13971 : GTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCC : 13934 vulgar: CbirOr477 149 221 . LHQN01017803.1 14149 13933 - 106 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13934 14149 106 - . gene_id 2 ; sequence CbirOr477 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13934 14149 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13934 14149 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13934 14149 106 - . alignment_id 2 ; Query CbirOr477 ; Align 14150 150 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr488 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 125 -> 225 Target range: 26255 -> 25958 126 : ThrLeuPheSerGlyCysCysLeuLeuIleLeuSerLeuLeuProIleLeuProTrpIle : 145 |||:!! !! !..!! ||| ! !:!!!!!! !! !||||||.!!:!! !! !||| ThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIle 26255 : ACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATT : 26198 146 : LeuGlyThrPheLeuLeuValAsnGluSerArgProLeuTyrAsnMetGlnIleValThr : 165 |||! !! !.!!:!!! !:!!||||||!!!||| !!! !! .!. ! !.!! LeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeu---PheValTyrProAla 26197 : CTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTG---TTCGTCTATCCAGCT : 26141 166 : GluTyrPheValAspLysAspLysThrPheTyrLeuIleLeuLeuHisThrTyrValSer : 185 ! ||||||||||||:!!|||||| ! !|||||||||:!! !|||! !|||:!! ! TyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuVal 26140 : TACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTA : 26081 186 : ValCysIleGlyIleIleAlaMetCysAlaAlaGlyMetMetLeuValAlaTyrLeuLys : 205 ||| !!: !||| !!.!.!.||||||..!! ! ! ! !||| ! !:!!:!! ValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGln 26080 : GTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAA : 26021 206 : HisValCysGlyValPheSerIleAlaSerTyrAsnMetGluGlnThrMetMetLeuAsn : 225 |||!.!||||||:!!!!.:!!||||||.!!!! :!::!! ! !:!:||| !||| HisAlaCysGlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGluAsn 26020 : CACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAAT : 25961 vulgar: CbirOr488 125 225 . LHQN01017803.1 26255 25958 - 115 M 34 102 G 1 0 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25959 26255 115 - . gene_id 1 ; sequence CbirOr488 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25959 26255 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25959 26255 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25959 26255 115 - . alignment_id 1 ; Query CbirOr488 ; Align 26256 126 102 ; Align 26154 161 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr495 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 137 Query range: 126 -> 216 Target range: 26255 -> 25988 127 : SerValThrLeuTyrSerMetValThrMetPheIleIleIleProSerValGlyProMet : 146 !!!||| !:!!! ! ! !.!.!!:!:|||!!: !:!:|||! !|||..!|||!!: ThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIle 26255 : ACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATT : 26198 147 : PheLeuAspValValLeuProLeuAsnGluSerArgSerArgAsnPheAlaValTyrAla : 166 ||||||:!!:!!:!!||||||||||||!!!|||:!!||| |||!.! ! ||| ---LeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAla 26197 : ---CTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCT : 26141 167 : GluTyrGlyIleAspGlnAsnArgTyrPheValSerIleLeuLeuTyrThrSerValMet : 186 ! ||| !:!!|||:!!:!!!:!||| ! !! !|||:!! !:!!! !! !:!!:!: TyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuVal 26140 : TACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTA : 26081 187 : IleValValGlyValSerIleMetValAlaValAspThrMetHisValAlaCysThrAla : 206 :!:|||:!! !:!!|||:!!.!. !||| !|||.!!! :!!||| !..!..! ! ValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGln 26080 : GTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAA : 26021 207 : HisAlaCysSerLeuPheGlnLeuIleGly : 216 |||||||||.!!|||!!. :!! !||| HisAlaCysGlyLeuLeuAlaIleAlaGly 26020 : CACGCTTGCGGATTGTTGGCCATTGCAGGG : 25989 vulgar: CbirOr495 126 216 . LHQN01017803.1 26255 25988 - 137 M 20 60 G 1 0 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26255 137 - . gene_id 1 ; sequence CbirOr495 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26255 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26255 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26255 137 - . alignment_id 1 ; Query CbirOr495 ; Align 26256 127 60 ; Align 26196 148 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr495 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 133 Query range: 108 -> 221 Target range: 14254 -> 13915 109 : AlaArgIleLeuLysAsnTyrSerAsnIleAlaHisLysPheThrIleLeuTyrSerVal : 128 !.!||| !! ! !||| !!..!!.!:!! ! !! !!:!! !:!! !||||||:!! GlyArgSerTyrLeuAsnAspGlnThrValTyrPheThrTyrIleValLysTyrSerIle 14254 : GGCAGATCTTATTTAAACGACCAAACTGTTTATTTTACGTACATTGTCAAATATTCGATA : 14197 129 : ThrLeuTyrSerMetValThrMetPheIleIleIleProSerValGlyProMetPheLeu : 148 .!! ! ! !:!: !..!!!:.!..!!:!: !! !!||| !||| .!!||| AlaAsnAlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeu 14196 : GCGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTG : 14137 149 : AspValValLeuProLeuAsnGluSerArgSerArgAsnPheAlaValTyrAlaGluTyr : 168 |||:!!:!!|||||| !||||||||||||..! ! !:! ! ! ||| ! ||| AspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyr 14136 : GACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTATCCGGCCTATTAT : 14077 169 : GlyIleAspGlnAsnArgTyrPheValSerIleLeuLeuTyrThrSerValMetIleVal : 188 !! !|||:!!:!!!:!||| !|||! !|||:!! !:!!! !:!! !:!!|||:!! PheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeu 14076 : TTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTT : 14017 189 : ValGlyValSerIleMetValAlaValAspThrMetHisValAlaCysThrAlaHisAla : 208 |||! ! !!! !:!: |||||| !||||||! :!!:!! ! !..! !|||!.! ValValPheTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGly 14016 : GTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGC : 13957 209 : CysSerLeuPheGlnLeuIleGlyArgGlnIleGluAsn : 221 |||.!!|||!!. :!! !||| :::|||...::: CysGlyLeuLeuAlaValSerGly***LysIleArgSer 13956 : TGCGGATTGTTGGCCGTGTCCGGgtaaaaaattcgatcg : 13916 vulgar: CbirOr495 108 221 . LHQN01017803.1 14254 13915 - 133 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13916 14254 133 - . gene_id 2 ; sequence CbirOr495 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13916 14254 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13916 14254 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13916 14254 133 - . alignment_id 2 ; Query CbirOr495 ; Align 14255 109 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr495 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 121 -> 202 Target range: 33732 -> 33492 122 : PheThrIleLeuTyrSerValThrLeuTyrSerMetValThrMetPheIleIleIlePro : 141 !!.:!!|||! ! !|||||||||:!!|||! ! |||:!!:!!||| !! ! ||| LeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThrAlaPro 33732 : TTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCC : 33675 142 : SerValGlyProMetPheLeuAspValValLeuProLeuAsnGluSerArgSerArgAsn : 161 !:!! |||.!..!!||||||:!!:!!! !|||||||||||||||||| !!||| LeuIle---ProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArgLeu 33674 : CTCATA---CCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTG : 33618 162 : PheAlaValTyrAlaGluTyrGlyIleAspGlnAsnArgTyrPheValSerIleLeuLeu : 181 !:!||| ! ! ||| ! ! ! !.!!:!!! !:!! !|||!:! !! !:!!:!! ! TyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValValGly 33617 : TACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTGGGG : 33558 182 : TyrThrSerValMetIleValValGlyValSerIleMetValAlaValAspThrMetHis : 201 |||||||||!.! |||! !:!!!.!! ! !:!::!:|||!.!!.!|||! !!!: TyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAlaAspIleIleMet 33557 : TACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATTATG : 33498 202 : Val : 202 :!! Ile 33497 : ATA : 33493 vulgar: CbirOr495 121 202 . LHQN01017803.1 33732 33492 - 101 M 22 66 G 1 0 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33493 33732 101 - . gene_id 3 ; sequence CbirOr495 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33493 33732 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33493 33732 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 33493 33732 101 - . alignment_id 3 ; Query CbirOr495 ; Align 33733 122 66 ; Align 33667 145 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr496PSE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 121 -> 201 Target range: 33732 -> 33492 122 : PheThrIleTyrPheSerIleLeuValTyrIleMetThrSerAlaPheIleIleValPro : 141 !!.:!!|||:!! !|||:!! !:!!|||||| ..!|||!.!||| !! !!.!||| LeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThrAlaPro 33732 : TTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCC : 33675 142 : LeuThrProIlePheLeuAspPheMetLeuProLeuAsnGluSerArgProArgPhePhe : 161 |||! !|||.!!.!!||||||.!.!!:! !||||||||||||||||||||||||!!.!:! LeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArgLeuTyr 33674 : CTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTAC : 33615 162 : AlaIleGluIleGluPheArgLeuAspLysAsnGluTyrPheLeuProLeuTyrPheTyr : 181 ||| !:!! ! ! ! ! !!!!:!! !:!!!!:|||!:!! ! !:!! ||| AlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValValGlyTyr 33614 : GCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTGGGGTAC : 33555 182 : ThrThrThrAlaIleValValGlyIleThrIleValValAlaValAspAlaMetHisIle : 201 |||!:!.!!..!|||! !:!!!.! ! !:!::!!|||!.!!.!||| !!!: ||| ThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAlaAspIleIleMetIle 33554 : ACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATTATGATA : 33495 vulgar: CbirOr496PSE 121 201 . LHQN01017803.1 33732 33492 - 130 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33493 33732 130 - . gene_id 1 ; sequence CbirOr496PSE ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33493 33732 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33493 33732 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33493 33732 130 - . alignment_id 1 ; Query CbirOr496PSE ; Align 33733 122 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr496PSE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 121 -> 224 Target range: 26270 -> 25961 122 : PheThrIleTyrPheSerIleLeuValTyrIleMetThrSerAlaPheIleIleValPro : 141 !:! !! !:! !!!:!:! !:!!! :!! .!!:!! !|||!!: !:!!||| TyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuPro 26270 : TATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCG : 26213 142 : LeuThrProIlePheLeuAspPheMetLeuProLeuAsnGluSerArgProArgPhePhe : 161 !!!..! !! .!!||||||.!!:!::!!||||||||||||!!!||| !!|||!!.||| PheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPhe 26212 : TTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTC : 26153 162 : AlaIleGluIleGluPheArgLeuAspLysAsnGluTyrPheLeuProLeuTyrPheTyr : 181 !.! ! ! ! ! !:! !:!!|||:!!:!!:!!||| !! ! !:!! :!! ValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHis 26152 : GTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCAT : 26093 182 : ThrThrThrAlaIleValValGlyIleThrIleValValAlaValAspAlaMetHisIle : 201 ! ! ! !!.!:!:|||:!! !|||:!!:!! !! !||| !||||||! :!!:!: MetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrVal 26092 : ATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTG : 26033 202 : ThrCysThrThrHisAlaCysSerLeuPheAlaSerValSerGlnGlnValGluAsnMet : 221 !..!..! !|||||||||.!!|||!!.|||! !!.!.!! !! !|||:!!...... TyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGln 26032 : TACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAA : 25973 222 : IleLeuLys : 224 :!!:!!:!! LeuMetGlu 25972 : TTAATGGAA : 25962 vulgar: CbirOr496PSE 121 224 . LHQN01017803.1 26270 25961 - 123 M 103 309 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25962 26270 123 - . gene_id 2 ; sequence CbirOr496PSE ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25962 26270 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25962 26270 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25962 26270 123 - . alignment_id 2 ; Query CbirOr496PSE ; Align 26271 122 309 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr481 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 129 -> 222 Target range: 14188 -> 13912 130 : SerIlePheGlyValPheGlyLeuIleSerValProIleLeuProHisIleIleAspVal : 149 :!!||| !! !!|||.!! !!!!:!:|||..!|||:!: !|||||||||:!:|||:!! AlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIle 14188 : GCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATT : 14131 150 : SerTrpProAlaAsnLysSerArgArgCysSerSerSerGlnIleLeuThrGluTyrPhe : 169 ! ! ||| !|||:!!|||||| ! :!!! !! ! !! !.!! ! |||||| LeuLeuProLysAsnGluSerArgAspValAlaTyrIle---TyrProAlaTyrTyrPhe 14130 : TTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATT---TATCCGGCCTATTATTTC : 14074 170 : IleAspGlnGluLysTyrPheTyrLeuIleLeuValHisMetTyrAlaAlaLeuTyrVal : 189 ! !|||:!!.!.|||||| ! ! !|||:!!..!|||||| :!!!.!:!! !||| ThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuVal 14073 : ACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTG : 14014 190 : GlyAlaAlaAlaMetValSerThrGlyAlaMetSerValValTyrPheGlnHisValCys : 209 ! ! ! !!.! |||:!! !! !.!!! ! !:!! ! ! ! ||||||! !||| ValPheTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCys 14013 : GTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGC : 13954 210 : GlyMetPheLysValAlaSerTyrArgIleLysGlnSer : 222 |||:!!!!. |||:!!.!. :::|||:::...::: GlyLeuLeuAlaValSerGly***LysIleArgSerAsn 13953 : GGATTGTTGGCCGTGTCCGGgtaaaaaattcgatcgaac : 13913 vulgar: CbirOr481 129 222 . LHQN01017803.1 14188 13912 - 113 M 33 99 G 1 0 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13913 14188 113 - . gene_id 1 ; sequence CbirOr481 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13913 14188 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13913 14188 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 13913 14188 113 - . alignment_id 1 ; Query CbirOr481 ; Align 14189 130 99 ; Align 14090 164 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr482NTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 217 -> 312 Target range: 458116 -> 458705 218 : AspAsnValAspGluPheLeuLeuHisPheMetLeuAlaAsnGlyIlePheValTyrS : 237 !!:|||:!! ! |||.!.||| ! !.!.:!:||| !! !.!! !|||:!!|||! GluAsnMetLysGluLeuLeuAlaAlaMetLeuLeuMetIleSerHisPheLeuTyrT 458117 : GAAAACATGAAGGAGCTGCTAGCTGCTATGCTACTCATGATCAGTCACTTCCTTTACA : 458174 238 : erPheValAlaAsnTyrAlaGlyGlnGluIleIleAspHisTyrAsnTyrIlePheSe : 256 !!|||:!!|||||||||||||||||| :!:!!:|||||| !! ! !!:!!|||.. hrPheLeuAlaAsnTyrAlaGlyGlnIleValMetAspHisSerIleAspValPheAs 458175 : CATTTCTGGCGAACTATGCCGGGCAAATCGTGATGGATCACAGTATCGACGTTTTCGA : 458231 257 : rAla{Al} >>>> Target Intron 1 >>>> {a}CysAsnIleGlnTrpTyr : 264 ! !{.!} 304 bp {!}! ! |||! !|||||| pLys{Th}++ ++{r}TyrLeuIleProTrpTyr 458232 : TAAA{AC}gt.........................ag{A}TACTTGATTCCATGGTAC : 458559 265 : ValAlaProLeuArgThrGlnLysLeuIleLeuPheLeuLeuGlnArgGlyAsnThrI : 284 !||||||||||||! !||||||! !:!!||||||:!!! !:!!|||.!!!!.! !: ArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleSerGluArgSerLysArgV 458560 : CGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATATCAGAACGCAGCAAAAGAG : 458619 285 : lePheAsnLeuArgIleAlaGlyValPheThrGlySerPheGluCysPheAlaThrMe : 303 !: !::!||| !!!!: !|||:!!.!!! !!..||||||||| |||||||||:! alSerSerLeuCysMetTyrGlyMetIleIleAlaSerPheGluPhePheAlaThrVa 458620 : TGAGTTCCTTGTGCATGTATGGCATGATCATTGCatccttcgaatttttcgccaCGGT : 458676 304 : tThrLysGlnAlaIleSerTyrPheThr : 312 :||||||... !::: :::|||::: lThrLysSerTrpLeu***HisPheSer 458677 : AACAAAATCTTGGCtatgacatttttct : 458705 vulgar: CbirOr482NTE 217 312 . KQ414815.1 458116 458705 + 177 M 40 120 S 0 2 5 0 2 I 0 300 3 0 2 S 1 1 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458117 458705 177 + . gene_id 1 ; sequence CbirOr482NTE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 458117 458238 . + . KQ414815.1 exonerate:protein2genome:local exon 458117 458238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 458239 458240 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 458239 458542 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 458541 458542 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458543 458705 . + . KQ414815.1 exonerate:protein2genome:local exon 458543 458705 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458117 458705 177 + . alignment_id 1 ; Query CbirOr482NTE ; Align 458117 218 120 ; Align 458544 259 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr482NTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 8 -> 147 Target range: 447038 -> 448322 9 : PheAsnIleAsnArgIleLeuLeuLeuLeuIleGlyLeuTrpProTyrGlnArgSerL : 28 !:!!:!:!!|||!:! |||||| !|||:!!|||||||||||||||:!!|||! !| TyrSerLeuAsnGlnGlnLeuLeuThrLeuValGlyLeuTrpProTyrLysArgTyrL 447039 : TATAGCCTCAATCAACAGCTTTTGACGTTGGTCGGACTGTGGCCGTACAAGAGGTACA : 447096 29 : ysMetValHisPheGlnValIleLeuPhePheGlyIleMetAlaCysSerValIleLe : 47 ||:!!..! !.!! ! !! !! !.!..!. !.!!.!. ! !:!! !!.!!|| ysLeuThrPheLeuTyrAsnThrTyrMetLeuPhePhePheIleThrAlaPhePheLe 447097 : AGTTGACATTCCTTTACAATACCTACATGCTGTTCTTCTTCATCACCGCTTTCTTTCT : 447153 48 : uGln >>>> Target Intron 1 >>>> AlaIleThrLeuCysGlyLeuLeuI : 57 |||| 870 bp ...|||:::::! ! !||| uGln++ --ThrIleSerValValPheAlaLeuS 447154 : TCAGgt.........................tcacaatttcagtGGTGTTTGCCTTGT : 448053 58 : lePheIleSerLeuThrIleTrpProArgIleIleAspIleAspIleValLeuLeuIl : 76 !!!.||||||!!!|||:!: ! !:!::!! ... :::|||:!! erLeuIleSerPheThrLeuValGluPheValValHisPheLeuAspIleLeuMetPr 448054 : CTTTAATTAGCTTTACCTTGGTTGAGTTCGTGGTAcattttctcgatattttaATGCC : 448110 77 : eAsnAspSerGlnProCysHisAlaArgHisAlaIleIleThrGluTyrPheLeuAsp : 95 !! :!! !... !! ! |||! !! !! ! !:!!||| :!!! !|||! !||| oMetAsnValSerThrArgHisGluLeuProPheLeuIle---GlnCysPheCysAsp 448111 : AATGAACGTATCTACACGGCACGAGCTACCCTTCCTAATT---CAATGTTTCTGTGAT : 448164 96 : GluGluArgTyrPheTyrLeuValLeuLeuGlnMetTyrValThrPhePheIleGlyG : 115 :!!!!:!:!!:!|||:!!! !:!!|||:!! :!! !||| ! !.!!:!:|||| GlnAspLysPhePheHisTyrIleLeuValPheLeuIleValLeuThrIleLeuGlyG 448165 : CAAGATAAATTCTTCCACTATATATTAGTTTTCTTGATCGTTCTCACTATTTTGGGTG : 448224 116 : lyPheThrMetThrAlaThrGlyThrMetLeuLeuGlyTyrIleLysTyrIleCysGl : 134 || !..!:!: !|||||| !|||! ! !||| !!:!! !:!!:!! !||||| lySerValValLeuAlaThrThrThrThrTyrLeuIlePheSerGlnHisCysCysGl 448225 : GAAGTGTGGTATTAGCCACTACAACGACTTACTTGATATTCAGTCAACATTGTTGTGG : 448281 135 : yMetPheLysIleAlaSerTyrArgIleGluGlnAlaMet : 147 |:!!||||||||||||.!!!! ..!||| ! |||||| yLeuPheLysIleAlaGly***GluIleMetThrAlaMet 448282 : ATTGTTCAAAATTGCAGGGTAAGAAATTATGACTGCTATG : 448322 vulgar: CbirOr482NTE 8 147 . KQ414815.1 447038 448322 + 136 M 40 120 5 0 2 I 0 866 3 0 2 M 41 123 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 447039 448322 136 + . gene_id 2 ; sequence CbirOr482NTE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 447039 447158 . + . KQ414815.1 exonerate:protein2genome:local exon 447039 447158 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 447159 447160 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 447159 448028 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 448027 448028 . + . intron_id 0 ; splice_site "tc" KQ414815.1 exonerate:protein2genome:local cds 448029 448322 . + . KQ414815.1 exonerate:protein2genome:local exon 448029 448322 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 447039 448322 136 + . alignment_id 2 ; Query CbirOr482NTE ; Align 447039 9 120 ; Align 448029 49 123 ; Align 448152 91 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr482NTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 45 -> 138 Target range: 457144 -> 457411 46 : IleLeuGlnAlaIleThrLeuCysGlyLeuLeuIlePheIleSerLeuThrIleTrpP : 65 !!::!! !!.! !|||! !|||||| !|||:!!.!!! !!!!||| !:!!!::| MetIleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheP 457145 : ATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTC : 457202 66 : roArgIleIleAspIleAspIleValLeuLeuIleAsnAspSerGlnProCysHisAl : 84 || ||| :!!|||||||||:!!! !:!:|||!!:|||!::||||||.!. ro------IleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLe 457203 : CG------ATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTT : 457253 85 : aArgHisAlaIleIleThrGluTyrPheLeuAspGluGluArgTyrPheTyrLeuVal : 103 ! !:!!! !.!!|||||||||:!!||| !:!!!:!|||.!.:!!! !:!! u------TyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIle 457254 : A------TACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATC : 457304 104 : LeuLeuGlnMetTyrValThrPhePheIleGlyGlyPheThrMetThrAlaThrGlyT : 123 :!! !!!.!!: !..! !.!..!.|||!.!!.! !|||:!:||||||!.!! !: IleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluS 457305 : ATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAAT : 457364 124 : hrMetLeuLeuGlyTyrIleLysTyrIleCysGlyMetPheLysIle : 138 !!:!:|||:!! ! !!:!! !:!!:!!||||||:!!||||||:!! erLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457365 : CCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr482NTE 45 138 . KQ414815.1 457144 457411 + 123 M 20 60 G 2 0 M 17 51 G 2 0 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457145 457411 123 + . gene_id 3 ; sequence CbirOr482NTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457145 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457145 457411 . + . insertions 0 ; deletions 4 KQ414815.1 exonerate:protein2genome:local similarity 457145 457411 123 + . alignment_id 3 ; Query CbirOr482NTE ; Align 457145 46 60 ; Align 457205 68 51 ; Align 457256 87 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr482NTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 259 -> 317 Target range: 445820 -> 446067 260 : AsnIleGlnTrpTyrValAlaProLeuArgThrGlnLysLeuIleLeuPheLeuLeuG : 279 ||| ! |||||| !!.!||||||!!!.!!|||||||||:!!||||||:!!:!!. AsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleMetM 445821 : AATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCATGA : 445878 280 : lnArgGlyAsnThrIlePheAsnLeuArgIleAlaGlyValPheThrGlySerPheGl : 298 .!!:!.!!!..! ! !! !!!.:!!!.!:!!:!!|||:!!|||.!! !!!!!:!:! etLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTyrLy 445879 : TGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTACAA : 445935 299 : uCysPheAlaThr >>>> Target Intron 1 >>>> MetThrLysGlnAlaI : 308 ! !!|||:!!:!! 73 bp |||! !!.. :!!. sGlyPheSerSer++ ++MetIleSerThrSerP 445936 : AGGTTTTTCCTCGgt.........................agATGATAAGCACTTCTT : 446038 309 : leSerTyrPheThrValIleTyrSerThr : 317 !!|||||| !!|||!.!|||||||||||| heSerTyrValThrAlaIleTyrSerThr 446039 : TCTCGTATGTCACAGCGATATATTCGACT : 446067 vulgar: CbirOr482NTE 259 317 . KQ414815.1 445820 446067 + 111 M 43 129 5 0 2 I 0 69 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445821 446067 111 + . gene_id 4 ; sequence CbirOr482NTE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 445821 445949 . + . KQ414815.1 exonerate:protein2genome:local exon 445821 445949 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 445950 445951 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 445950 446022 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 446021 446022 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 446023 446067 . + . KQ414815.1 exonerate:protein2genome:local exon 446023 446067 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445821 446067 111 + . alignment_id 4 ; Query CbirOr482NTE ; Align 445821 260 129 ; Align 446023 303 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr478 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 141 -> 220 Target range: 448064 -> 448298 142 : LeuThrValIleGlnCysGlyProTyrIleLeuAspValIleMetProLysAsnValS : 161 !!!|||:!!:!!:!!! !! ! !:::...||||||::::::||||||! !||||||| PheThrLeuValGluPheValValHisPheLeuAspIleLeuMetProMetAsnValS 448065 : TTTACCTTGGTTGAGTTCGTGGTAcattttctcgatattttaATGCCAATGAACGTAT : 448122 162 : erTyrAlaArgHisLeuIleValThrLeuThrThrTyrPheAlaValGlnGluArgTy : 180 || .!!|||||| !:!! ! !|||! ! !! !|||..!! !|||!!:!:!!: er---ThrArgHisGluLeuProPheLeuIleGlnCysPheCysAspGlnAspLysPh 448123 : CT---ACACGGCACGAGCTACCCTTCCTAATTCAATGTTTCTGTGATCAAGATAAATT : 448176 181 : rPheTyrLeuLeuLeuLeuTyrLeuAsnAlaValCysThrValGlyThrValValIle : 199 !|||:!!! !:!!|||:!!!:!|||! !!.!:!! !! !:!!||| ! !|||:!! ePheHisTyrIleLeuValPheLeuIleValLeuThrIleLeuGlyGlySerValVal 448177 : CTTCCACTATATATTAGTTTTCTTGATCGTTCTCACTATTTTGGGTGGAAGTGTGGTA : 448233 200 : LeuAlaValGlyThrMetLeuValSerCysPheLysTyrIleCysGlyMetLeuArgV : 219 ||||||..! !|||! ! !:!!! !! ! !:!!:!! !||||||:!!!!!!:!: LeuAlaThrThrThrThrTyrLeuIlePheSerGlnHisCysCysGlyLeuPheLysI 448234 : TTAGCCACTACAACGACTTACTTGATATTCAGTCAACATTGTTGTGGATTGTTCAAAA : 448293 220 : alAla : 220 !!||| leAla 448294 : TTGCA : 448298 vulgar: CbirOr478 141 220 . KQ414815.1 448064 448298 + 110 M 20 60 G 1 0 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448065 448298 110 + . gene_id 1 ; sequence CbirOr478 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448065 448298 . + . KQ414815.1 exonerate:protein2genome:local exon 448065 448298 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 448065 448298 110 + . alignment_id 1 ; Query CbirOr478 ; Align 448065 142 60 ; Align 448125 163 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr478 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 338 -> 392 Target range: 458543 -> 458705 339 : TyrAsnAlaProTrpTyrLeuValProLeuLysIleGlnLysLeuIleLeuPheLeuL : 358 ||| !|||||||||! !!.!||||||::!|||||||||! !:!!||||||:!!! TyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleS 458544 : TACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATAT : 458601 359 : euGlnArgSerAsnLysAlaPheThrLeuAspIleGlyGlyLeuPheThrLeuSerIl : 377 !:!!||||||!!.!:!!.! !:!!||| !!!: !|||:!!.!!! ! |||.. erGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPh 458602 : CAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatcctt : 458658 378 : eGluSerPheAlaSerLeuValSerThrSerValSerTyrPheThr : 392 .||| ||||||:!!:!!..!!.!:!!!!!::: :::|||::: eGluPhePheAlaThrValThrLysSerTrpLeu***HisPheSer 458659 : cgaatttttcgccaCGGTAACAAAATCTTGGCtatgacatttttct : 458705 vulgar: CbirOr478 338 392 . KQ414815.1 458543 458705 + 104 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458544 458705 104 + . gene_id 2 ; sequence CbirOr478 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 458544 458705 . + . KQ414815.1 exonerate:protein2genome:local exon 458544 458705 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458544 458705 104 + . alignment_id 2 ; Query CbirOr478 ; Align 458544 339 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr478 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 338 -> 384 Target range: 441705 -> 441843 339 : TyrAsnAlaProTrpTyrLeuValProLeuLysIleGlnLysLeuIleLeuPheLeuL : 358 ||||||:!! !!||||||! !|||||||||!.. |||||||||:!!||||||:!!: TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 359 : euGlnArgSerAsnLysAlaPheThrLeuAspIleGlyGlyLeuPheThrLeuSerIl : 377 !!..!!:!|||!..! !!! !! !:!!:!!:!!..!|||:!!|||.!!! !!!! etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 378 : eGluSerPheAlaSerLeuVal : 384 !:!!.!!|||:!!|||:!!:!! rLysGlyPheSerSerValIle 441821 : CAAAGGTTTTTCCTCGGTAATT : 441843 vulgar: CbirOr478 338 384 . KQ414815.1 441705 441843 + 103 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441843 103 + . gene_id 3 ; sequence CbirOr478 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441706 441843 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441843 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441843 103 + . alignment_id 3 ; Query CbirOr478 ; Align 441706 339 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr478 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 338 -> 384 Target range: 445817 -> 445955 339 : TyrAsnAlaProTrpTyrLeuValProLeuLysIleGlnLysLeuIleLeuPheLeuL : 358 ||||||:!! !!||||||! !|||||||||!.. |||||||||:!!||||||:!!: TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 359 : euGlnArgSerAsnLysAlaPheThrLeuAspIleGlyGlyLeuPheThrLeuSerIl : 377 !!..!!:!|||!..! !!! !! !:!!:!!:!!..!|||:!!|||.!!! !!!! etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 378 : eGluSerPheAlaSerLeuVal : 384 !:!!.!!|||:!!|||:!!:!! rLysGlyPheSerSerValIle 445933 : CAAAGGTTTTTCCTCGGTAATT : 445955 vulgar: CbirOr478 338 384 . KQ414815.1 445817 445955 + 103 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 445955 103 + . gene_id 4 ; sequence CbirOr478 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445818 445955 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445955 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 445955 103 + . alignment_id 4 ; Query CbirOr478 ; Align 445818 339 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr479PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 333 -> 379 Target range: 441705 -> 441843 334 : TyrAsnThrSerTrpTyrLeuAlaProLeuGlnIleGlnLysLeuIleLeuPheLeuL : 353 ||||||:!!!!!||||||! !!.!||||||... |||||||||:!!||||||:!!: TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 354 : euGlnArgSerAsnLysThrPheThrLeuAsnIleGlyGlyLeuPheThrLeuSerIl : 372 !!..!!:!|||!..! !!! !! !:!!|||:!!..!|||:!!|||.!!! !!!! etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 373 : eGluSerPheAlaSerLeuVal : 379 !:!!.!!|||:!!|||:!!:!! rLysGlyPheSerSerValIle 441821 : CAAAGGTTTTTCCTCGGTAATT : 441843 vulgar: CbirOr479PSE 333 379 . KQ414815.1 441705 441843 + 106 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441843 106 + . gene_id 1 ; sequence CbirOr479PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441706 441843 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441843 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441843 106 + . alignment_id 1 ; Query CbirOr479PSE ; Align 441706 334 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr479PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 333 -> 379 Target range: 445817 -> 445955 334 : TyrAsnThrSerTrpTyrLeuAlaProLeuGlnIleGlnLysLeuIleLeuPheLeuL : 353 ||||||:!!!!!||||||! !!.!||||||... |||||||||:!!||||||:!!: TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 354 : euGlnArgSerAsnLysThrPheThrLeuAsnIleGlyGlyLeuPheThrLeuSerIl : 372 !!..!!:!|||!..! !!! !! !:!!|||:!!..!|||:!!|||.!!! !!!! etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 373 : eGluSerPheAlaSerLeuVal : 379 !:!!.!!|||:!!|||:!!:!! rLysGlyPheSerSerValIle 445933 : CAAAGGTTTTTCCTCGGTAATT : 445955 vulgar: CbirOr479PSE 333 379 . KQ414815.1 445817 445955 + 106 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 445955 106 + . gene_id 2 ; sequence CbirOr479PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445818 445955 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445955 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 445955 106 + . alignment_id 2 ; Query CbirOr479PSE ; Align 445818 334 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr485PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 162 -> 257 Target range: 485767 -> 486528 163 : IleHisIleThrArgGluTyrPheValAspGlnGluLysTyrPheTyrTyrIleLeuL : 182 |||! !|||!.! !|||:!!||||||||||||:!!|||||||||||| !||| ! IleProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaA 485768 : ATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAG : 485825 183 : euHisLeuGlyAlaSerPheLeuIleGlyThrIleValIleValGlyThrGlySerLe : 201 !|||:!!! ! !! ! !!:!!||||||.!!||||||:!!:!!.!!||| || laHisValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLe 485826 : CACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatatt : 485882 202 : uLeuPheGlyCysMetLysTyrMetCysGlyLeuPheArgIleAla{Se} >>>> T : 217 |:::.....! !!::!!:!!! |||||||||!:!! !|||!.!{.!} uIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIleVal{Gl}++ 485883 : aattatggCGATAATACAGCACACCTGTGGTTTGTATACAATCGTT{GG}gt...... : 485934 218 : arget Intron 1 >>>> {r}TyrArgIleAspGlnThrMetGluThrProMetP : 229 476 bp {!}||||||||||||!!.|||.!.! .!! !!!: ++{y}TyrArgIleAspHisThrPheValAlaAsnIleP 485935 : ...................ag{C}TATCGTATAGATCACACGTTTGTTGCAAACATAC : 486442 230 : heGlnSerAlaGlyLeuSerLysAspCysValThrTyrLysAsnIleGluArgAlaIl : 248 ! !:!! ! !..!!:! !:!!! !:!!!:!!!.|||! ! !:! roGlyLeuSerProAlaGluArgArgValLeuIleHisArgLysIleValSerLeuVa 486443 : CAGGACTTTCTCCTGCGGAAAGGAGAGTTCTAATTCACAGAAAAATAGTCTCGCTCGT : 486499 249 : eAspIleHisArgLysAlaIleGluLeu : 257 ::!!:!:|||!:!!:!!.!! |||||| lAsnLeuHisLysArgValLysGluLeu 486500 : GAATTTGCACAAAAGAGTCAAGGAGTTA : 486528 vulgar: CbirOr485PI 162 257 . KQ414815.1 485767 486528 + 152 M 54 162 S 0 2 5 0 2 I 0 472 3 0 2 S 1 1 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485768 486528 152 + . gene_id 1 ; sequence CbirOr485PI ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 485768 485931 . + . KQ414815.1 exonerate:protein2genome:local exon 485768 485931 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 485932 485933 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 485932 486407 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 486406 486407 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 486408 486528 . + . KQ414815.1 exonerate:protein2genome:local exon 486408 486528 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485768 486528 152 + . alignment_id 1 ; Query CbirOr485PI ; Align 485768 163 162 ; Align 486409 218 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr485PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 127 -> 214 Target range: 467632 -> 467890 128 : SerValTyrGlyValSerAsnAlaIleThrSerSerValLeuProValValProArgI : 147 ||||||||| !:!! !!! ! !|||.!! !! !:!!|||||| !! | SerValTyrLeuIleProIleIleIleAlaValIleLeuLeuProPheTyrAspIleI 467633 : tcagtgTACTTAATTCCAATCATTATAGCCGTTATATTATTACCATTCTacgatataa : 467690 148 : leLeuArgThrPheThrSerIleAsnValSerAspGluHisPheMetIleHisIleTh : 166 ||...... ||||||:!:||||||||| !||| .!! :!!! ! ! lePheAsnIleValThrSerLeuAsnValSerArgGlu---IleGluLeuProAlaAs 467691 : ttttcaatattgtaaCATCGTTGAACGTATCACGTGAG---ATTGAATTACCTGCTGA : 467744 167 : rArgGluTyrPheValAspGlnGluLysTyrPheTyrTyrIleLeuLeuHisLeuGly : 185 !! !|||||||||..!|||:!!...||||||!:! ! !! !|||||||||:!!! ! pLeuGluTyrPheThrAspGluSerLysTyrTyrProIleLysLeuLeuHisValVal 467745 : TCTTGAGTACTTTACAGACGAAAGCAAGTATTATCCTATTAAACTGTTACATGTGGTT : 467801 186 : AlaSerPheLeuIleGlyThrIleValIleValGlyThrGlySerLeuLeuPheGlyC : 205 ::! ! !:!!! !|||..!! |||:!::!! !! !! !||| !|||!!. !! SerHisAlaIleThrGlyValThrValValIlePheIleAspSerThrLeuLeuIleP 467802 : AGTCATGCTATCACTGGAGTGACGGTTGTGATTTTCATTGATAGTACGTTGTTGATAT : 467861 206 : ysMetLysTyrMetCysGlyLeuPheArg : 214 !:!::!!||| |||!.!||||||!:! heLeuGlnTyrSerCysAlaLeuPheLys 467862 : TCCTCCAATATTCTTGTGCGCTCTTCAAA : 467890 vulgar: CbirOr485PI 127 214 . KQ414815.1 467632 467890 + 109 M 32 96 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 467633 467890 109 + . gene_id 2 ; sequence CbirOr485PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 467633 467890 . + . KQ414815.1 exonerate:protein2genome:local exon 467633 467890 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 467633 467890 109 + . alignment_id 2 ; Query CbirOr485PI ; Align 467633 128 96 ; Align 467729 161 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr485PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 302 -> 365 Target range: 487020 -> 487277 303 : IleSerValTyrAsnAlaLysTrpTyrArgThrProLeuTyrIleGlnArgIleIleL : 322 ||| ! !||||||:!!:!!|||||||||! !|||:!! |||:::::::::| IleHisArgTyrAsnSerGluTrpTyrArgIleProValAlaGluGlnLysValLeuL 487021 : ATTCACAGGTACAATTCAGAATGGTACAGAATCCCTGTAGCGGAacaaaaagtattat : 487078 323 : euLeuLeuLeuGlnLysGlyThrGlyAsnTyrTyrValValPheGlyGlyIlePheVa : 341 ||||||||:!!|||!!..!! ! !:!! !! :!!:!!.!!|||||||||.!! euLeuLeuMetGlnAsnSerLeuLysAspAspMetIleLeuLeuGlyGlyIleIlePr 487079 : tacTCCTGATGCAAAATAGTTTAAAAGATGATATGATCCTACTTGGCGGAATTATTCC : 487135 342 : lLeuSerMetGluAsnAlaAlaThr >>>> Target Intron 1 >>>> LeuL : 351 ! !|||.!.:!!... !:!! ! 68 bp :!!: oAlaSerPheGlnGlyPheSerLeu++ ++MetI 487136 : TGCATCTTTCCAGGGATTTTCACTGgt.........................agATGA : 487233 352 : euSerThrSerIleSerTyrPheThrValLeuSerSerValGln : 365 !! !!||||||.!!|||||||||! !||||||! !||| !!:!! leArgThrSerPheSerTyrPheMetValLeuTyrSerPheGlu 487234 : TTCGAACATCCTTCTCGTATTTCATGGTACTTTATTCTTTCGAG : 487277 vulgar: CbirOr485PI 302 365 . KQ414815.1 487020 487277 + 109 M 47 141 5 0 2 I 0 64 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 487021 487277 109 + . gene_id 3 ; sequence CbirOr485PI ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 487021 487161 . + . KQ414815.1 exonerate:protein2genome:local exon 487021 487161 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 487162 487163 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 487162 487229 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 487228 487229 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 487230 487277 . + . KQ414815.1 exonerate:protein2genome:local exon 487230 487277 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 487021 487277 109 + . alignment_id 3 ; Query CbirOr485PI ; Align 487021 303 141 ; Align 487230 350 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr485PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 126 -> 224 Target range: 448031 -> 448322 127 : ValSerValTyrGlyValSerAsnAlaIleThrSerSerValLeuProValValProA : 146 :::|||||| !!.!! !::! !|||!:!! !!!!:!!:!! ! !!||| !. IleSerValValPheAlaLeuSerLeuIleSerPheThrLeuValGluPheValValH 448032 : atttcagtGGTGTTTGCCTTGTCTTTAATTAGCTTTACCTTGGTTGAGTTCGTGGTAc : 448089 147 : rgIleLeuArgThrPheThrSerIleAsnValSerAspGluHisPheMetIleHisIl : 165 .....||| ...! ! !!!!:||||||||| ..!||| :!: ! !:! isPheLeuAspIleLeuMetProMetAsnValSerThrArgHisGluLeuProPheLe 448090 : attttctcgatattttaATGCCAATGAACGTATCTACACGGCACGAGCTACCCTTCCT : 448146 166 : eThrArgGluTyrPheValAspGlnGluLysTyrPheTyrTyrIleLeuLeuHisLeu : 184 !! ! :!!! !||| !||||||!!:|||!:!|||:!!|||||||||:!! !||| uIle---GlnCysPheCysAspGlnAspLysPhePheHisTyrIleLeuValPheLeu 448147 : AATT---CAATGTTTCTGTGATCAAGATAAATTCTTCCACTATATATTAGTTTTCTTG : 448200 185 : GlyAlaSerPheLeuIleGlyThrIleValIleValGlyThrGlySerLeuLeuPheG : 204 !!.! ! !:!!:!:||| !! !|||:!!:!!!.!||| !!!! !! !!!. IleValLeuThrIleLeuGlyGlySerValValLeuAlaThrThrThrThrTyrLeuI 448201 : ATCGTTCTCACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAACGACTTACTTGA : 448260 205 : lyCysMetLysTyrMetCysGlyLeuPheArgIleAlaSerTyrArgIleAspGlnTh : 223 !! !! :!!:!! ||||||||||||!:!||||||.!!!! ..!||| .! lePheSerGlnHisCysCysGlyLeuPheLysIleAlaGly***GluIleMetThrAl 448261 : TATTCAGTCAACATTGTTGTGGATTGTTCAAAATTGCAGGGTAAGAAATTATGACTGC : 448317 224 : rMet : 224 !||| aMet 448318 : TATG : 448322 vulgar: CbirOr485PI 126 224 . KQ414815.1 448031 448322 + 102 M 40 120 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448032 448322 102 + . gene_id 4 ; sequence CbirOr485PI ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448032 448322 . + . KQ414815.1 exonerate:protein2genome:local exon 448032 448322 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 448032 448322 102 + . alignment_id 4 ; Query CbirOr485PI ; Align 448032 127 120 ; Align 448152 168 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr496PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 126 -> 214 Target range: 475509 -> 475773 127 : SerIleLeuValTyrIleMetThrSerAlaPheIleIleValProLeuThrProIleP : 146 !!!:!!||||||||| !! ! !! !.!!.!.|||:!::!!! !!!!:!! !!! . ThrValLeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerSerLysI 475510 : ACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGTCTAAGA : 475567 147 : heLeuAspPheMetLeuProLeuAsnGluSerArgProArgPhePheAlaIleGluIl : 165 !!||||||! !:!!||||||||||||||||||||||||!!!!::! ! !|||...|| leLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleArgIl 475568 : TCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaat : 475624 166 : eGluPheArgLeuAspLysAsnGluTyrPheLeuProLeuTyrPheTyrThrThrThr : 184 ||||::: :::::::!!.!.:!!||||||! !! ! ! .!!||| !|||..! eGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrVal 475625 : agaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGTA : 475681 185 : AlaIleValValGlyIleThrIleValValAlaValAspAlaMetHisIleThrCysT : 204 .!!|||:!!:!! ! !|||! !||||||..!!!:|||!!: !! !! !!! ThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrpL 475682 : ACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGGT : 475741 205 : hrThrHisAlaCysSerLeuPheAlaSerVal : 214 ! !|||..! ||||||||| ||| euGlnHisCysIleSerLeuPheGluIleVal 475742 : TGCAACATTGCATaagtttatttgaaattgtt : 475773 vulgar: CbirOr496PSE 126 214 . KQ414815.1 475509 475773 + 129 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475510 475773 129 + . gene_id 1 ; sequence CbirOr496PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475510 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475510 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475510 475773 129 + . alignment_id 1 ; Query CbirOr496PSE ; Align 475510 127 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr496PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 125 -> 214 Target range: 481971 -> 482238 126 : PheSerIleLeuValTyrIleMetThrSerAlaPheIleIleValProLeuThrProI : 145 ...::: |||:!!||| ! !..!! ! !.!.|||:!: !! !:!!:!! !. IleThrAlaLeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerP 481972 : attacagcGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTT : 482029 146 : lePheLeuAspPheMetLeuProLeuAsnGluSerArgProArgPhePheAlaIleGl : 164 !! !!|||||| !!!!::!!||||||||||||!!!||| !!!.! ||| !!:!!.. heValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSe 482030 : TCGTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATC : 482086 165 : uIleGluPheArgLeuAspLysAsnGluTyrPheLeuProLeuTyrPheTyrThrThr : 183 !!!:|||!:! !:!!|||:!!.!.:!!|||! ||| !:!! |||:!! ! ! rMetGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrp 482087 : AATGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGG : 482143 184 : ThrAlaIleValValGlyIleThrIleValValAlaValAspAlaMetHisIleThrC : 203 !:!!.!!:!!|||! ! !||||||:!!|||!.!:!!!!:.!!:!! !:!!! !! PheSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetT 482144 : TTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGT : 482203 204 : ysThrThrHisAlaCysSerLeuPheAlaSerVal : 214 ! ! !||||||...|||||||||.!! !||| rpLeuGluHisAlaAlaSerLeuPheThrLeuVal 482204 : GGCTTGAACACGCTGCAAGCTTGTTCACCCTTGTA : 482238 vulgar: CbirOr496PSE 125 214 . KQ414815.1 481971 482238 + 126 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481972 482238 126 + . gene_id 2 ; sequence CbirOr496PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481972 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 481972 482238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481972 482238 126 + . alignment_id 2 ; Query CbirOr496PSE ; Align 481972 126 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr496PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 137 -> 211 Target range: 471582 -> 471804 138 : IleIleValProLeuThrProIlePheLeuAspPheMetLeuProLeuAsnGluSerA : 157 :!!|||:!! !!:!!:!!|||:!!.!!||||||.!!!!::!!||||||||| !|||| ValIleLeuSerMetSerProLeuIleLeuAspIleIleIleProLeuAsnThrSerA 471583 : GTAATACTGTCCATGTCGCCTCTTATTCTCGATATTATAATACCTCTGAACACGTCAC : 471640 158 : rgProArgPhePheAlaIleGluIleGluPheArgLeuAspLysAsnGluTyrPheLe : 176 ||||||||!:!||| !!.!! !.!!!!:|||! !! !:!!:!!.!.|||||||||! rgProArgTyrPheProPheThrPheAspPheIleProAsnGlnGluGluTyrPhe** 471641 : GTCCACGTTACTTTCCATTTACGTTCGATTTCATTCCCAATCAAGAGGAATACTTCTA : 471697 177 : uProLeuTyrPheTyrThrThrThrAlaIleValValGlyIleThrIleValValAla : 195 !|||:!! !.!!!:!:!! !! ! ! !:!! !|||:!!.!! !:!!:!!::! *ProIleThrIlePheSerGlyIleLeuCysIleCysGlyLeuAlaAlaMetIleSer 471698 : ACCGATTACTATCTTTTCTGGCATATTGTGCATTTGTGGATTAGCAGCAATGATAAGT : 471754 196 : ValAspAlaMetHisIleThrCysThrThrHisAlaCysSerLeuPhe : 211 !!!:!.!:!!! !!!:! ! !..! !|||!.! !!.!!|||!:! SerGluGlyLeuLeuMetMetAsnValLeuHisValArgGlyLeuTyr 471755 : AGCGAGGGTCTGCTTATGATGAATGTTTTACACGTACGTGGATTGTAT : 471804 vulgar: CbirOr496PSE 137 211 . KQ414815.1 471582 471804 + 121 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471583 471804 121 + . gene_id 3 ; sequence CbirOr496PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471583 471804 . + . KQ414815.1 exonerate:protein2genome:local exon 471583 471804 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471583 471804 121 + . alignment_id 3 ; Query CbirOr496PSE ; Align 471583 138 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr496PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 118 -> 211 Target range: 457126 -> 457405 119 : SerArgLysPheThrIleTyrPheSerIleLeuValTyrIleMetThrSerAlaPheI : 138 ...:::||| .!!!!!:!!! !..!||| ! .!! !!.!.!!! AspLysLysLysProSerMetIleThrValSerThrTyrCysGlyAlaLeuValIleT 457127 : gataaaaaaaaaccttcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTA : 457184 139 : leIleValProLeuThrProIlePheLeuAspPheMetLeuProLeuAsnGluSerAr : 157 !! :!!! !||| !||||||!!.||||||.!!:!!:!!||||||||||||||||| hrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerAr 457185 : CCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACG : 457241 158 : gProArgPhePheAlaIleGluIleGluPheArgLeuAspLysAsnGluTyrPheLeu : 176 |||| !! !!. !:!! ! |||!:! !:!!|||! !!!.:!!|||.!.! ! gProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHis 457242 : CCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCAT : 457298 177 : ProLeuTyrPheTyrThrThrThrAlaIleValValGlyIleThrIleValValAlaV : 196 !:!! ! :!!! !! !|||..!:!!:!!:!!!.! !|||! :!!..!||| TyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaA 457299 : TATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTA : 457358 197 : alAspAlaMetHisIleThrCysThrThrHisAlaCysSerLeuPhe : 211 !!!::!!:!:! !|||||| !..! !|||!.!|||.!!|||||| snGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPhe 457359 : ACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTC : 457405 vulgar: CbirOr496PSE 118 211 . KQ414815.1 457126 457405 + 118 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457127 457405 118 + . gene_id 4 ; sequence CbirOr496PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457127 457405 . + . KQ414815.1 exonerate:protein2genome:local exon 457127 457405 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457127 457405 118 + . alignment_id 4 ; Query CbirOr496PSE ; Align 457127 119 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr496PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 124 -> 211 Target range: 467626 -> 467887 125 : TyrPheSerIleLeuValTyrIleMetThrSerAlaPheIleIleValProLeuThrP : 144 :::||||||:::! !:!! ! !!!:! !! !||| !!|||:!!:!!|||!!! PhePheSerValTyrLeuIleProIleIleIleAlaValIleLeuLeuProPheTyrA 467627 : tttttttcagtgTACTTAATTCCAATCATTATAGCCGTTATATTATTACCATTCTacg : 467684 145 : roIlePheLeuAspPheMetLeuProLeuAsnGluSerArgProArgPhePheAlaIl : 163 |||......:::...::: ! !!||||||! !|||||| !! ! !!. !! spIleIlePheAsnIleValThrSerLeuAsnValSerArgGluIleGluLeuProAl 467685 : atataattttcaatattgtaaCATCGTTGAACGTATCACGTGAGATTGAATTACCTGC : 467741 164 : eGluIleGluPheArgLeuAspLysAsnGluTyrPheLeuProLeuTyrPheTyrThr : 182 !!!::!!|||!:! ! !|||:!!!:!:!!|||!:!! ! ! ! !!.:!!..! aAspLeuGluTyrPheThrAspGluSerLysTyrTyrProIleLysLeuLeuHisVal 467742 : TGATCTTGAGTACTTTACAGACGAAAGCAAGTATTATCCTATTAAACTGTTACATGTG : 467798 183 : ThrThrAlaIleValValGlyIleThrIleValValAlaValAspAlaMetHisIleT : 202 ..!!:! ! !:!!..!|||:!:|||:!!|||:!! !:!!|||::!! ! :!:! ValSerHisAlaIleThrGlyValThrValValIlePheIleAspSerThrLeuLeuI 467799 : GTTAGTCATGCTATCACTGGAGTGACGGTTGTGATTTTCATTGATAGTACGTTGTTGA : 467858 203 : hrCysThrThrHisAlaCysSerLeuPhe : 211 !! ! ! !:!!:!!|||:!!|||||| lePheLeuGlnTyrSerCysAlaLeuPhe 467859 : TATTCCTCCAATATTCTTGTGCGCTCTTC : 467887 vulgar: CbirOr496PSE 124 211 . KQ414815.1 467626 467887 + 105 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 467627 467887 105 + . gene_id 5 ; sequence CbirOr496PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 467627 467887 . + . KQ414815.1 exonerate:protein2genome:local exon 467627 467887 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 467627 467887 105 + . alignment_id 5 ; Query CbirOr496PSE ; Align 467627 125 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr486 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 332 -> 389 Target range: 458534 -> 458705 333 : IleThrValTyrAsnIleProTrpTyrGlnAlaProLeuHisIleGlnLysLeuIleL : 352 ||| ! !||| ||||||||||||!::|||||||||!..|||||||||! !:!!| IleArgArgTyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuL 458535 : ATTCGTAGATACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCT : 458592 353 : euIleLeuLeuGlnArgAsnCysLysProPheAlaLeuAsnPheHisGlyIlePheVa : 371 ||.!!:!!! !:!!|||!:! !:! ! !:!!||| !.!.:!!|||!!:.!!:! euPheIleSerGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIl 458593 : TGTTCATATCAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCAT : 458649 372 : lAlaSerLeuGluCysPheAlaMetLeuValSerAlaSerValSerTyrPheThr : 389 !||||||...||| |||||| !:!!..!!.!:!!!!!::: :::|||::: eAlaSerPheGluPhePheAlaThrValThrLysSerTrpLeu***HisPheSer 458650 : TGCatccttcgaatttttcgccaCGGTAACAAAATCTTGGCtatgacatttttct : 458705 vulgar: CbirOr486 332 389 . KQ414815.1 458534 458705 + 110 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458535 458705 110 + . gene_id 1 ; sequence CbirOr486 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 458535 458705 . + . KQ414815.1 exonerate:protein2genome:local exon 458535 458705 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458535 458705 110 + . alignment_id 1 ; Query CbirOr486 ; Align 458535 333 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr481 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 119 -> 214 Target range: 457129 -> 457411 120 : ArgArgTyrThrLysValLeuThrIlePheSerIlePheGlyValPheGlyLeuIleS : 139 :::::: ..!:!!:!!|||:!!! !!!! !! !|||!.!.!.! !:!!! !! LysLysLysProSerMetIleThrValSerThrTyrCysGlyAlaLeuValIleThrT 457130 : aaaaaaaaaccttcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCA : 457187 140 : erValProIleLeuProHisIleIleAspValSerTrpProAlaAsnLysSerArgAr : 158 !!:!!! !:!!!!!||| :!!:!!|||:!! ! ||| !|||:!!||||||! hrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgPr 457188 : CGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCC : 457244 159 : gCysSerSerSerGlnIleLeuThrGluTyrPheIleAspGlnGluLysTyrPheTyr : 177 !||| ..!! ! ! :!! !.!!|||||||||:!!|||..!:!!||||||.!.:!! oCys---GluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHis 457245 : CTGT---GAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCAT : 457298 178 : LeuIleLeuValHisMetTyrAlaAlaLeuTyrValGlyAlaAlaAlaMetValSerT : 197 ! !|||:!!!.!|||!!: !.!!..!||| :!!!.!|||.!!.!!:!:..!:!!! TyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaA 457299 : TATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTA : 457358 198 : hrGlyAlaMetSerValValTyrPheGlnHisValCysGlyMetPheLysVal : 214 .!! !:!!:!: !:!!..! !! ! ! !||||||||||||:!!||||||:!! snGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457359 : ACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr481 119 214 . KQ414815.1 457129 457411 + 142 M 40 120 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457130 457411 142 + . gene_id 1 ; sequence CbirOr481 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457130 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457130 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457130 457411 142 + . alignment_id 1 ; Query CbirOr481 ; Align 457130 120 120 ; Align 457250 161 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr481 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 124 -> 223 Target range: 448028 -> 448322 125 : ValLeuThrIlePheSerIlePheGlyValPheGlyLeuIleSerValProIleLeuP : 144 ...::::::::: ! ! ! !!!...!:!!.!!.!!!!!! !! !||| !.!!:!! ThrIleSerValValPheAlaLeuSerLeuIleSerPheThrLeuValGluPheValV 448029 : acaatttcagtGGTGTTTGCCTTGTCTTTAATTAGCTTTACCTTGGTTGAGTTCGTGG : 448086 145 : roHisIleIleAspValSerTrpProAlaAsnLysSerArgArgCysSerSerSerGl : 163 !|||...:::|||::: !||| !||| !|||! !||| !..! !! alHisPheLeuAspIleLeuMetProMetAsnValSerThrArg---HisGluLeuPr 448087 : TAcattttctcgatattttaATGCCAATGAACGTATCTACACGG---CACGAGCTACC : 448140 164 : nIleLeuThrGluTyrPheIleAspGlnGluLysTyrPheTyrLeuIleLeuValHis : 182 .!!|||! !:!!! !||| !||||||!!:|||!:!|||:!!! !||||||||| ! oPheLeuIleGlnCysPheCysAspGlnAspLysPhePheHisTyrIleLeuValPhe 448141 : CTTCCTAATTCAATGTTTCTGTGATCAAGATAAATTCTTCCACTATATATTAGTTTTC : 448197 183 : MetTyrAlaAlaLeuTyrValGlyAlaAlaAlaMetValSerThrGlyAlaMetSerV : 202 :!! !!.! ! ! !:!!|||!.!::!!.!:!::!!:!!||| !.!!! ! !: LeuIleValLeuThrIleLeuGlyGlySerValValLeuAlaThrThrThrThrTyrL 448198 : TTGATCGTTCTCACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAACGACTTACT : 448257 203 : alValTyrPheGlnHisValCysGlyMetPheLysValAlaSerTyrArgIleLysGl : 221 !!:!!!:! !|||||| !||||||:!!||||||:!!|||.!!!! ..!|||! ! euIlePheSerGlnHisCysCysGlyLeuPheLysIleAlaGly***GluIleMetTh 448258 : TGATATTCAGTCAACATTGTTGTGGATTGTTCAAAATTGCAGGGTAAGAAATTATGAC : 448314 222 : nSerMet : 223 :!!||| rAlaMet 448315 : TGCTATG : 448322 vulgar: CbirOr481 124 223 . KQ414815.1 448028 448322 + 126 M 34 102 G 1 0 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448029 448322 126 + . gene_id 2 ; sequence CbirOr481 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448029 448322 . + . KQ414815.1 exonerate:protein2genome:local exon 448029 448322 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 448029 448322 126 + . alignment_id 2 ; Query CbirOr481 ; Align 448029 125 102 ; Align 448131 160 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr481 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 145 -> 214 Target range: 485722 -> 485926 146 : IleIleAspValSerTrpProAlaAsnLysSerArgArgCysSerSerSerGlnIleL : 165 |||:!:|||:!!! ! ||| !||| ! !!!|||! ! !!!!!! !! ||| IleLeuAspIleLeuIleProLeuAsnTyrThrArgPro---ArgThrIleProIleA 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCG---CGGACGATTCCTATAA : 485777 166 : euThrGluTyrPheIleAspGlnGluLysTyrPheTyrLeuIleLeuValHisMetTy : 184 !:!!|||:!!|||:!!||||||:!!||||||||||||! !||| !!.!|||:!: snSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValVa 485778 : ACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGT : 485834 185 : rAlaAlaLeuTyrValGlyAlaAlaAlaMetValSerThrGlyAlaMetSerValVal : 203 ! ! !:!! !:!!|||||| !!.!:!::!!|||||| ::: :::..! lLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAla 485835 : TCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCG : 485891 204 : TyrPheGlnHisValCysGlyMetPheLysVal : 214 .!.||||||..!||||||:!!!:!! !:!! IleIleGlnHisThrCysGlyLeuTyrThrIle 485892 : ATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr481 145 214 . KQ414815.1 485722 485926 + 120 M 13 39 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485926 120 + . gene_id 3 ; sequence CbirOr481 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485926 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 485723 485926 120 + . alignment_id 3 ; Query CbirOr481 ; Align 485723 146 39 ; Align 485762 160 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr481 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 123 -> 214 Target range: 475500 -> 475770 124 : LysValLeuThrIlePheSerIlePheGlyValPheGlyLeuIleSerValProIleL : 143 ...:::::!|||:!!.!. ! ! !:!!||| !:!!|||! !:!!! !.!!! AsnIleValThrValLeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheS 475501 : aatattgtTACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCT : 475558 144 : euProHisIleIleAspValSerTrpProAlaAsnLysSerArgArgCysSerSerSe : 162 ! !! ! |||:!!||| !! !! ||| !|||:!!||||||! ! |||!!!|| erSerLysIleLeuAspSerLeuLeuProLeuAsnGluSerArgPro---SerTrpSe 475559 : CGTCTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCT---AGCTGGTC : 475612 163 : rGlnIleLeuThrGluTyrPheIleAspGlnGluLysTyrPheTyrLeuIleLeuVal : 181 |! !||| ||||||||||||::::!!:!!|||||||||||||||! !:!!:!! rLeuIleArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIle 475613 : TCTGAtacgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATC : 475669 182 : HisMetTyrAlaAlaLeuTyrValGlyAlaAlaAlaMetValSerThrGlyAlaMetS : 201 :!!..! !!.!.!!:!! !:!! !!.!.!!.!! |||:!!|||! !|||!!:! TyrGlnThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIleP 475670 : TATCAGACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATAT : 475729 202 : erValValTyrPheGlnHisValCysGlyMetPheLysVal : 214 !..!:!!!::!!.|||||| ! ...:::|||:::::: heThrMetTrpLeuGlnHisCysIleSerLeuPheGluIle 475730 : TTACCATGTGGTTGCAACATTGCATaagtttatttgaaatt : 475770 vulgar: CbirOr481 123 214 . KQ414815.1 475500 475770 + 113 M 35 105 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475501 475770 113 + . gene_id 4 ; sequence CbirOr481 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475501 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475501 475770 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 475501 475770 113 + . alignment_id 4 ; Query CbirOr481 ; Align 475501 124 105 ; Align 475606 160 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr481 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 159 -> 217 Target range: 478620 -> 478794 160 : SerSerSerGlnIleLeuThrGluTyrPheIleAspGlnGluLysTyrPheTyrLeuI : 179 ...:::|||..! ! !||||||||||||||||||::::::||||||||| ...| GluThrSerMetGlyThrThrGluTyrPheIleAspGluLysLysTyrPheIlePheI 478621 : gaaacatcaATGGGCACCACGGAATACTTCATTGacgagaagaaatatttcatattta : 478678 180 : leLeuValHisMetTyrAlaAlaLeuTyrValGlyAlaAlaAlaMetValSerThrGl : 198 ||::: |||:!!||| !:!!||| :!! !|||.!!!.! |||:!!|||! leIleSerHisValTyrLeuSerLeuIleMetHisAlaThrValTyrValAlaThrGl 478679 : ttatttctcacGTGTACCTGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGA : 478735 199 : yAlaMetSerValValTyrPheGlnHisValCysGlyMetPheLysValAlaSerTyr : 217 !:!! !:!!:!!!::.!. !|||..! !|||:!!!:!!!.:!! !!!!||| uSer***ValIleMetTrpMetValHisThrIleGlyLeuTyrAsnIleIleArgTyr 478736 : GTCGTGAGTGATTATGTGGATGGTGCATACTATCGGCTTGTATAATATCATAAGGTAT : 478792 vulgar: CbirOr481 159 217 . KQ414815.1 478620 478794 + 111 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478621 478794 111 + . gene_id 5 ; sequence CbirOr481 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478621 478794 . + . KQ414815.1 exonerate:protein2genome:local exon 478621 478794 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478621 478794 111 + . alignment_id 5 ; Query CbirOr481 ; Align 478621 160 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr495 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 134 -> 215 Target range: 481995 -> 482238 135 : ThrMetPheIleIleIleProSerValGlyProMetPheLeuAspValValLeuProL : 154 ..!:!!.!.:!:|||:!: ! !:!!..! !.!. !!|||||||||:!!:!!|||| ValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValProL 481996 : GTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTCCTC : 482053 155 : euAsnGluSerArgSerArgAsnPheAlaValTyrAlaGluTyrGlyIleAspGlnAs : 173 ||||||||!!!|||!!!!.!.!.||| !!|||! !|||||| !|||||||||.! euAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGlnGl 482054 : TAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCAGCA : 482110 174 : nArgTyrPheValSerIleLeuLeuTyrThrSerValMetIleValValGlyValSer : 192 .!:!|||! :!!! !||| !!!!:!! !!!! !! .!!:!!|||! !!.!!!! nLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAlaThr 482111 : GAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCAACG : 482167 193 : IleMetValAlaValAspThrMetHisValAlaCysThrAlaHisAlaCysSerLeuP : 212 |||!!:|||!.!:!!!!:|||:!! !||| !!! !! !||||||...||||||| IleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerLeuP 482168 : ATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCTTGT : 482227 213 : heGlnLeuIle : 215 || |||:!! heThrLeuVal 482228 : TCACCCTTGTA : 482238 vulgar: CbirOr495 134 215 . KQ414815.1 481995 482238 + 139 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481996 482238 139 + . gene_id 1 ; sequence CbirOr495 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481996 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 481996 482238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481996 482238 139 + . alignment_id 1 ; Query CbirOr495 ; Align 481996 135 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr495 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 133 -> 214 Target range: 464594 -> 464840 134 : ValThrMetPheIleIleIleProSerValGlyProMetPheLeuAspValValLeuP : 153 |||! !:!!|||||| !:!!! !..!||| !||| .!!|||||||||||| !| ValIleLeuPheIleCysLeuLeuGluValLeuProAspIleLeuAspValValAlaP 464595 : GTTATACTGTTCATCTGTTTACTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGC : 464652 154 : roLeuAsnGluSerArgSerArgAsnPheAlaValTyrAlaGluTyrGlyIle<->As : 171 ||||||||||||||||||||!.!.!.!:! !:!! !||||||!:! !||| || roLeuAsnGluSerArgSerHisGlnTyrLeuIleThrAlaGluPhePheIleThrAs 464653 : CCCTCAATGAATCTCGTTCTCATCAATACTTAATTACCGCGGAATTTTTCATCACTGA : 464709 172 : pGlnAsnArgTyrPheValSerIleLeuLeuTyrThrSerValMetIleValValGly : 190 |...:::! ! !!!:!:!! !! !! !:!! !|||..!:!!! :!!:!!:!!||| pSerSerProAsnTyrIleValThrCysValGlyThrAspIleThrLeuIleMetGly 464710 : TAGTTCGCCGAATTATATCGTAACTTGTGTTGGTACGGATATTACTCTTATCATGGGA : 464766 191 : ValSerIleMetValAlaValAspThrMetHisValAlaCysThrAlaHisAlaCysS : 210 |||!!!! !!!::!!||| !!!:|||.!. ! !! !! ! !||| !|||: ValThrThrIleIleAlaSerGluThrPheThrPheLeuLeuLeuGlnHisIleCysA 464767 : GTCACGACAATAATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCG : 464826 211 : erLeuPheGlnLeu : 214 !!:!!|||:!!:!! laMetPheLysIle 464827 : CAATGTTCAAAATC : 464840 vulgar: CbirOr495 133 214 . KQ414815.1 464594 464840 + 127 M 37 111 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464595 464840 127 + . gene_id 2 ; sequence CbirOr495 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464595 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464595 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464595 464840 127 + . alignment_id 2 ; Query CbirOr495 ; Align 464595 134 111 ; Align 464709 171 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr495 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 144 -> 214 Target range: 457201 -> 457411 145 : ProMetPheLeuAspValValLeuProLeuAsnGluSerArgSerArgAsnPheAlaV : 164 |||!!:!!.||||||:!!|||:!!|||||||||||||||||| !! !!.!.!!. !: ProIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrL 457202 : CCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACC : 457259 165 : alTyrAlaGluTyrGlyIleAspGlnAsnArgTyrPheValSerIleLeuLeuTyrTh : 183 !! ||||||||| !:!!|||..!!!.!:!|||.!. !! !|||:!! !:!!! euThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIl 457260 : TTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACAT : 457316 184 : rSerValMetIleValValGlyValSerIleMetValAlaValAspThrMetHisVal : 202 !! !..! :!!:!!:!!!.!!.!!!!! :!:..!||| !!!::!!:!:! !:!! eIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIle 457317 : TATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATA : 457373 203 : AlaCysThrAlaHisAlaCysSerLeuPheGlnLeu : 214 .!! !..! !|||!.!|||.!!||||||:!!||| ThrAsnValLeuHisValCysGlyLeuPheLysLeu 457374 : ACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr495 144 214 . KQ414815.1 457201 457411 + 121 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457202 457411 121 + . gene_id 3 ; sequence CbirOr495 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457202 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457202 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457202 457411 121 + . alignment_id 3 ; Query CbirOr495 ; Align 457202 145 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr495 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 130 -> 214 Target range: 471558 -> 471810 131 : TyrSerMetValThrMetPheIleIleIleProSerValGlyProMetPheLeuAspV : 150 |||!!!! :!! !!!: !! !:!!|||! !|||:!!..!|||:!:.!!||||||: TyrThrAsnLeuLeuIleThrSerValIleLeuSerMetSerProLeuIleLeuAspI 471559 : TACACGAATCTACTCATTACTAGTGTAATACTGTCCATGTCGCCTCTTATTCTCGATA : 471616 151 : alValLeuProLeuAsnGluSerArgSerArgAsnPheAlaValTyrAlaGluTyrGl : 169 !!:!!:!!||||||||| !|||||| !!||| !!||| !! !! !!!:!:! leIleIleProLeuAsnThrSerArgProArgTyrPheProPheThrPheAspPheIl 471617 : TTATAATACCTCTGAACACGTCACGTCCACGTTACTTTCCATTTACGTTCGATTTCAT : 471673 170 : yIleAspGlnAsnArgTyrPheValSerIleLeuLeuTyrThrSerValMetIleVal : 188 ! !:!!|||.!...!|||||| ! !!||| !:!!!:!:!!.!!:!!:!! !:!! eProAsnGlnGluGluTyrPhe***ProIleThrIlePheSerGlyIleLeuCysIle 471674 : TCCCAATCAAGAGGAATACTTCTAACCGATTACTATCTTTTCTGGCATATTGTGCATT : 471730 189 : ValGlyValSerIleMetValAlaValAspThrMetHisValAlaCysThrAlaHisA : 208 !|||:!!:!! !|||:!!::! !!!: !:!!! !:!! ! !..! !|||! CysGlyLeuAlaAlaMetIleSerSerGluGlyLeuLeuMetMetAsnValLeuHisV 471731 : TGTGGATTAGCAGCAATGATAAGTAGCGAGGGTCTGCTTATGATGAATGTTTTACACG : 471790 209 : laCysSerLeuPheGlnLeu : 214 .! !!.!!|||!:!.!.:!! alArgGlyLeuTyrAsnIle 471791 : TACGTGGATTGTATAACATC : 471810 vulgar: CbirOr495 130 214 . KQ414815.1 471558 471810 + 116 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471559 471810 116 + . gene_id 4 ; sequence CbirOr495 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471559 471810 . + . KQ414815.1 exonerate:protein2genome:local exon 471559 471810 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471559 471810 116 + . alignment_id 4 ; Query CbirOr495 ; Align 471559 131 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr495 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 146 -> 215 Target range: 475566 -> 475773 147 : PheLeuAspValValLeuProLeuAsnGluSerArgSerArgAsnPheAlaValTyrA : 166 .!!|||||| !:!!||||||||||||||||||||| !!!!! ! ! !::: IleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleArgI 475567 : ATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaa : 475624 167 : laGluTyrGlyIleAspGlnAsnArgTyrPheValSerIleLeuLeuTyrThrSerVa : 185 |||||| |||::::!!.!.!:!|||||| ! !! !:!!:!!||| !!!!|| leGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrVa 475625 : tagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGT : 475681 186 : lMetIleValValGlyValSerIleMetValAlaValAspThrMetHisValAlaCys : 204 |! !|||:!!:!! !! !!!!! ||||||..!!!:.!!!!: !..! !!! lThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrp 475682 : AACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGG : 475738 205 : ThrAlaHisAlaCysSerLeuPheGlnLeuIle : 215 ! !|||..! |||||||||::::::::: LeuGlnHisCysIleSerLeuPheGluIleVal 475739 : TTGCAACATTGCATaagtttatttgaaattgtt : 475773 vulgar: CbirOr495 146 215 . KQ414815.1 475566 475773 + 106 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475567 475773 106 + . gene_id 5 ; sequence CbirOr495 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475567 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475567 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475567 475773 106 + . alignment_id 5 ; Query CbirOr495 ; Align 475567 147 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr497IC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 125 -> 215 Target range: 481971 -> 482241 126 : PheSerIleLeuLeuTyrIleMetSerSerAlaPheIleIleValProLeuLysProI : 145 ...::: |||:!!||| ! ! !! ! !.!.|||:!: !! !:!!..! !. IleThrAlaLeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerP 481972 : attacagcGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTT : 482029 146 : lePheLeuAspIleIleLeuProLeuAsnGluSerArgProArgPhePheAlaIleGl : 164 !! !!||||||:!!|||:!!||||||||||||!!!||| !!!.! ||| !!:!!.. heValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSe 482030 : TCGTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATC : 482086 165 : uLeuGluCysArgLeuAspLysAsnGluHisPheLeuLeuLeuTyrPheTyrThrThr : 183 !:!!|||! ! !:!!|||:!!.!.:!!:!!! |||!!!:!! |||:!! ! ! rMetGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrp 482087 : AATGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGG : 482143 184 : ThrIleIleValValGlyIleThrIleIleValAlaIleAspThrValTyrValIleS : 203 ! !.!!:!!|||! ! !||||||||||||!.!|||!!:|||:!! !|||!!:! PheSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetT 482144 : TTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGT : 482203 204 : erThrThrHisAlaCysSerLeuPheAlaSerValArg : 215 !! ! !||||||...|||||||||.!! !|||||| rpLeuGluHisAlaAlaSerLeuPheThrLeuValArg 482204 : GGCTTGAACACGCTGCAAGCTTGTTCACCCTTGTAAGG : 482241 vulgar: CbirOr497IC 125 215 . KQ414815.1 481971 482241 + 136 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481972 482241 136 + . gene_id 1 ; sequence CbirOr497IC ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481972 482241 . + . KQ414815.1 exonerate:protein2genome:local exon 481972 482241 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481972 482241 136 + . alignment_id 1 ; Query CbirOr497IC ; Align 481972 126 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr497IC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 126 -> 215 Target range: 475509 -> 475776 127 : SerIleLeuLeuTyrIleMetSerSerAlaPheIleIleValProLeuLysProIleP : 146 !!!:!!|||:!!||| !! ! !! !.!!.!.|||:!::!!! !!!!..! !!! . ThrValLeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerSerLysI 475510 : ACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGTCTAAGA : 475567 147 : heLeuAspIleIleLeuProLeuAsnGluSerArgProArgPhePheAlaIleGluLe : 165 !!|||||| !:!:||||||||||||||||||||||||!!!!::! ! !|||...:: leLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleArgIl 475568 : TCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaat : 475624 166 : uGluCysArgLeuAspLysAsnGluHisPheLeuLeuLeuTyrPheTyrThrThrThr : 184 :||| :::::::!!.!.:!!:!!|||! !||| ! .!!||| !|||..! eGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrVal 475625 : agaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGTA : 475681 185 : IleIleValValGlyIleThrIleIleValAlaIleAspThrValTyrValIleSerT : 204 ! |||:!!:!! ! !|||! !||||||! !!!:.!!:!!!:!..!!!:!!! ThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrpL 475682 : ACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGGT : 475741 205 : hrThrHisAlaCysSerLeuPheAlaSerValArg : 215 ! !|||..! ||||||||| |||||| euGlnHisCysIleSerLeuPheGluIleValArg 475742 : TGCAACATTGCATaagtttatttgaaattgttagG : 475776 vulgar: CbirOr497IC 126 215 . KQ414815.1 475509 475776 + 126 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475510 475776 126 + . gene_id 2 ; sequence CbirOr497IC ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475510 475776 . + . KQ414815.1 exonerate:protein2genome:local exon 475510 475776 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475510 475776 126 + . alignment_id 2 ; Query CbirOr497IC ; Align 475510 127 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr497IC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 124 -> 215 Target range: 467626 -> 467899 125 : TyrPheSerIleLeuLeuTyrIleMetSerSerAlaPheIleIleValProLeuLysP : 144 :::||||||:::! !||| ! !!!:! !! !||| !!|||:!!:!!|||!!! PhePheSerValTyrLeuIleProIleIleIleAlaValIleLeuLeuProPheTyrA 467627 : tttttttcagtgTACTTAATTCCAATCATTATAGCCGTTATATTATTACCATTCTacg : 467684 145 : roIlePheLeuAspIleIleLeuProLeuAsnGluSerArgProArgPhePheAlaIl : 163 |||......:::|||::: ! !!||||||! !|||||| !! ! !!. !! spIleIlePheAsnIleValThrSerLeuAsnValSerArgGluIleGluLeuProAl 467685 : atataattttcaatattgtaaCATCGTTGAACGTATCACGTGAGATTGAATTACCTGC : 467741 164 : eGluLeuGluCysArgLeuAspLysAsnGluHisPheLeuLeuLeuTyrPheTyrThr : 182 !!!:||||||! ! ! !|||:!!!:!:!!:!!!:!! !:!! ! !!.:!!..! aAspLeuGluTyrPheThrAspGluSerLysTyrTyrProIleLysLeuLeuHisVal 467742 : TGATCTTGAGTACTTTACAGACGAAAGCAAGTATTATCCTATTAAACTGTTACATGTG : 467798 183 : ThrThrIleIleValValGlyIleThrIleIleValAlaIleAspThrValTyrValI : 202 ..!!:! ! !:!!..!|||:!:|||:!!:!::!! !||||||!:!..!! :!!| ValSerHisAlaIleThrGlyValThrValValIlePheIleAspSerThrLeuLeuI 467799 : GTTAGTCATGCTATCACTGGAGTGACGGTTGTGATTTTCATTGATAGTACGTTGTTGA : 467858 203 : leSerThrThrHisAlaCysSerLeuPheAlaSerValArg : 215 ||! ! ! !:!!:!!|||:!!|||||| !!!!..!||| lePheLeuGlnTyrSerCysAlaLeuPheLysThrThrArg 467859 : TATTCCTCCAATATTCTTGTGCGCTCTTCAAAACGACCAGG : 467899 vulgar: CbirOr497IC 124 215 . KQ414815.1 467626 467899 + 121 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 467627 467899 121 + . gene_id 3 ; sequence CbirOr497IC ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 467627 467899 . + . KQ414815.1 exonerate:protein2genome:local exon 467627 467899 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 467627 467899 121 + . alignment_id 3 ; Query CbirOr497IC ; Align 467627 125 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr497IC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 125 -> 211 Target range: 448031 -> 448289 126 : PheSerIleLeuLeuTyrIleMetSerSerAlaPheIleIleValProLeuLysProI : 145 ...|||::::!!!!! !:!: ! !! !::!|||! !:!:||| !!!! ! ! IleSerValValPheAlaLeuSerLeuIleSerPheThrLeuValGluPheValValH 448032 : atttcagtGGTGTTTGCCTTGTCTTTAATTAGCTTTACCTTGGTTGAGTTCGTGGTAc : 448089 146 : lePheLeuAspIleIleLeuProLeuAsnGluSerArgProArgPhePheAlaIleGl : 164 ||||||||||||::::!!|||:!!|||! !|||! !! !!.! .!. !!.!! isPheLeuAspIleLeuMetProMetAsnValSerThrArgHisGluLeuProPheLe 448090 : attttctcgatattttaATGCCAATGAACGTATCTACACGGCACGAGCTACCCTTCCT : 448146 165 : uLeuGluCysArgLeuAspLysAsnGluHisPheLeuLeuLeuTyrPheTyrThrThr : 183 !:!!:!!||| !! !|||:!!:!!:!! !|||! !! !:!!! !!!:! !! ! uIleGlnCysPheCysAspGlnAspLysPhePheHisTyrIleLeuValPheLeuIle 448147 : AATTCAATGTTTCTGTGATCAAGATAAATTCTTCCACTATATATTAGTTTTCTTGATC : 448203 184 : ThrIleIleValValGlyIleThrIleIleValAlaIleAspThrValTyrValIleS : 203 ..!:!!! !:!!:!!||| !!:!:!::!!:!!|||! ! |||..!|||:!!|||! ValLeuThrIleLeuGlyGlySerValValLeuAlaThrThrThrThrTyrLeuIleP 448204 : GTTCTCACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAACGACTTACTTGATAT : 448263 204 : erThrThrHisAlaCysSerLeuPhe : 211 !!:! !|||..!|||.!!|||||| heSerGlnHisCysCysGlyLeuPhe 448264 : TCAGTCAACATTGTTGTGGATTGTTC : 448289 vulgar: CbirOr497IC 125 211 . KQ414815.1 448031 448289 + 117 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448032 448289 117 + . gene_id 4 ; sequence CbirOr497IC ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448032 448289 . + . KQ414815.1 exonerate:protein2genome:local exon 448032 448289 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448032 448289 117 + . alignment_id 4 ; Query CbirOr497IC ; Align 448032 126 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr497IC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 118 -> 215 Target range: 457126 -> 457417 119 : SerArgLysPheThrIleTyrPheSerIleLeuLeuTyrIleMetSerSerAlaPheI : 138 ...:::||| .!!!!!:!!! ! !||| ! :!! !!.!.!!! AspLysLysLysProSerMetIleThrValSerThrTyrCysGlyAlaLeuValIleT 457127 : gataaaaaaaaaccttcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTA : 457184 139 : leIleValProLeuLysProIlePheLeuAspIleIleLeuProLeuAsnGluSerAr : 157 !! :!!! !||| ||||||!!.|||||||||:!::!!||||||||||||||||| hrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerAr 457185 : CCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACG : 457241 158 : gProArgPhePheAlaIleGluLeuGluCysArgLeuAspLysAsnGluHisPheLeu : 176 |||| !! !!. !:!! ! !|||! ! !:!!|||! !!!.:!!:!!.!.! ! gProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHis 457242 : CCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCAT : 457298 177 : LeuLeuTyrPheTyrThrThrThrIleIleValValGlyIleThrIleIleValAlaI : 196 ! !:!! ! :!!! !! !||| !:!!:!!:!!!.! !|||! :!!..!|||! TyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaA 457299 : TATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTA : 457358 197 : leAspThrValTyrValIleSerThrThrHisAlaCysSerLeuPheAlaSerValAr : 215 !!!::!!:!! !:!!! !:!..! !|||!.!|||.!!|||||| ! !..!|| snGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeuThrAr 457359 : ACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTTACTAG : 457415 216 : g : 215 | g 457416 : G : 457417 vulgar: CbirOr497IC 118 215 . KQ414815.1 457126 457417 + 115 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457127 457417 115 + . gene_id 5 ; sequence CbirOr497IC ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457127 457417 . + . KQ414815.1 exonerate:protein2genome:local exon 457127 457417 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457127 457417 115 + . alignment_id 5 ; Query CbirOr497IC ; Align 457127 119 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr497IC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 137 -> 211 Target range: 471582 -> 471804 138 : IleIleValProLeuLysProIlePheLeuAspIleIleLeuProLeuAsnGluSerA : 157 :!!|||:!! !!:!!..!|||:!!.!!||||||||||||:!!||||||||| !|||| ValIleLeuSerMetSerProLeuIleLeuAspIleIleIleProLeuAsnThrSerA 471583 : GTAATACTGTCCATGTCGCCTCTTATTCTCGATATTATAATACCTCTGAACACGTCAC : 471640 158 : rgProArgPhePheAlaIleGluLeuGluCysArgLeuAspLysAsnGluHisPheLe : 176 ||||||||!:!||| !!.!! !!!!!!:! !! !! !:!!:!!.!.|||:!!|||! rgProArgTyrPheProPheThrPheAspPheIleProAsnGlnGluGluTyrPhe** 471641 : GTCCACGTTACTTTCCATTTACGTTCGATTTCATTCCCAATCAAGAGGAATACTTCTA : 471697 177 : uLeuLeuTyrPheTyrThrThrThrIleIleValValGlyIleThrIleIleValAla : 195 !! !:!! !.!!!:!:!! !! !:!: !:!! !|||:!!.!! !!!::!!::! *ProIleThrIlePheSerGlyIleLeuCysIleCysGlyLeuAlaAlaMetIleSer 471698 : ACCGATTACTATCTTTTCTGGCATATTGTGCATTTGTGGATTAGCAGCAATGATAAGT : 471754 196 : IleAspThrValTyrValIleSerThrThrHisAlaCysSerLeuPhe : 211 ! !!!: !:!! !:!!!!:!:!..! !|||!.! !!.!!|||!:! SerGluGlyLeuLeuMetMetAsnValLeuHisValArgGlyLeuTyr 471755 : AGCGAGGGTCTGCTTATGATGAATGTTTTACACGTACGTGGATTGTAT : 471804 vulgar: CbirOr497IC 137 211 . KQ414815.1 471582 471804 + 112 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471583 471804 112 + . gene_id 6 ; sequence CbirOr497IC ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471583 471804 . + . KQ414815.1 exonerate:protein2genome:local exon 471583 471804 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471583 471804 112 + . alignment_id 6 ; Query CbirOr497IC ; Align 471583 138 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr497IC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 145 -> 214 Target range: 485722 -> 485929 146 : PheLeuAspIleIleLeuProLeuAsnGluSerArgProArgPhePheAlaIleGluL : 165 .!!|||||||||:!::!!||||||||| ! !!!||||||||| .!! !!|||.!.! IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 166 : euGluCysArgLeuAspLysAsnGluHisPheLeuLeuLeuTyrPheTyrThrThrTh : 184 !||| ! !:!!|||:!!.!.:!!:!!|||! !! !:!! :!!..!..! erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 185 : rIleIleValValGlyIleThrIleIleValAlaIleAspThrValTyrValIleSer : 203 !.!!:!!:!!:!!||| ! !:!!:!!:!!::! ::: ::: ::: ! ! uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 204 : ThrThrHisAlaCysSerLeuPheAlaSerVal : 214 ! ! !|||.!!|||.!!|||!:!.!!! !||| IleGlnHisThrCysGlyLeuTyrThrIleVal 485895 : ATACAGCACACCTGTGGTTTGTATACAATCGTT : 485929 vulgar: CbirOr497IC 145 214 . KQ414815.1 485722 485929 + 103 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485929 103 + . gene_id 7 ; sequence CbirOr497IC ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485929 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485929 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485929 103 + . alignment_id 7 ; Query CbirOr497IC ; Align 485723 146 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr490PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 332 -> 391 Target range: 458543 -> 458798 333 : TyrSerIleGlnTrpTyrThrAlaProIleArgIleGlnLysPheIleLeuPheLeuL : 352 |||! !|||! !|||||| !||||||:!!||||||||||||!:!:!!||||||:!!! TyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleS 458544 : TACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATAT : 458601 353 : euGlnArgSerCysLysMetHisPheIleLysIleGlyGlyLeuPheIleThrSerLe : 371 !:!!|||||| !:!:!! !! !:!: !!: !|||:!!.!!|||.!.|||.. erGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPh 458602 : CAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatcctt : 458658 372 : uGluGlyPheAlaSer >>>> Target Intron 1 >>>> LeuCysThrAlaS : 381 .||| ||||||:!! 78 bp !!! ! !|||: eGluPhePheAlaThr++ ++PheMetLysAlaA 458659 : cgaatttttcgccaCGgt.........................agTTCATGAAAGCAG : 458766 382 : erValSerTyrPheThrValIleTyrSerVal : 391 !!:!!||||||! !||||||:!!||||||:!! laMetSerTyrCysThrValLeuTyrSerIle 458767 : CGATGTCCTATTGCACGGTATTATATTCCATC : 458798 vulgar: CbirOr490PSE 332 391 . KQ414815.1 458543 458798 + 131 M 44 132 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458544 458798 131 + . gene_id 1 ; sequence CbirOr490PSE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 458544 458675 . + . KQ414815.1 exonerate:protein2genome:local exon 458544 458675 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 458676 458677 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 458676 458753 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 458752 458753 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458754 458798 . + . KQ414815.1 exonerate:protein2genome:local exon 458754 458798 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458544 458798 131 + . alignment_id 1 ; Query CbirOr490PSE ; Align 458544 333 132 ; Align 458754 377 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr490PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 326 -> 374 Target range: 490182 -> 490326 327 : AsnMetPheSerThrAlaTyrSerIleGlnTrpTyrThrAlaProIleArgIleGlnL : 346 |||!!:.!!!:!! !..! !!|||:!:.!.|||||||||||||||||| !||||||| AsnIleLeuAsnArgCysAsnSerValAsnTrpTyrThrAlaProIleAlaIleGlnL 490183 : AACATACTTAATAGATGCAACAGCGTGAATTGGTACACGGCTCCAATTGCCATACAAA : 490240 347 : ysPheIleLeuPheLeuLeuGlnArgSerCysLysMetHisPheIleLysIleGlyGl : 365 ||!!.:!:|||.!!:!!:!!|||!.!!!! ::!! !! |||! !:!! !|| ysLeuLeuLeuIleIleMetGlnAsnThrIleArgAsnSerSerIleThrLeuPheGl 490241 : AATTGCTGTTGATCATTATGCAAAATACTATACGAAATTCTTCAATAACACTCTTCGG : 490297 366 : yLeuPheIleThrSerLeuGluGlyPhe : 374 |:!!!:!|||:!!|||!!!!!:|||||| yMetTyrIleSerSerPheAspGlyPhe 490298 : AATGTATATATCGTCTTTCGATGGTTTC : 490326 vulgar: CbirOr490PSE 326 374 . KQ414815.1 490182 490326 + 111 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 490183 490326 111 + . gene_id 2 ; sequence CbirOr490PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 490183 490326 . + . KQ414815.1 exonerate:protein2genome:local exon 490183 490326 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 490183 490326 111 + . alignment_id 2 ; Query CbirOr490PSE ; Align 490183 327 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr491 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 292 -> 382 Target range: 458113 -> 458687 293 : ValGlnGluIleGluLysIleMetGlyHisLeuLeuLeuIleIlePheIlePheIleT : 312 :!!:!!.!.!!::!!:!!:!::!:!.! !:!!||||||!!:||| ! !|||:!!| MetGluAsnMetLysGluLeuLeuAlaAlaMetLeuLeuMetIleSerHisPheLeuT 458114 : ATGGAAAACATGAAGGAGCTGCTAGCTGCTATGCTACTCATGATCAGTCACTTCCTTT : 458171 313 : yrMetPheValAlaAsnTyrAlaGlyGlnGluIleThrAspTyrAsnAsnHisMetPh : 331 ||! |||:!!|||||||||||||||||| :!:! !|||:!!!:!! ! !!:!:|| yrThrPheLeuAlaAsnTyrAlaGlyGlnIleValMetAspHisSerIleAspValPh 458172 : ACACATTTCTGGCGAACTATGCCGGGCAAATCGTGATGGATCACAGTATCGACGTTTT : 458228 332 : eLeuThr{Va} >>>> Target Intron 1 >>>> {l}TyrAsnThrProTrp : 339 | !! !{..} 304 bp {!}||| ! !|||||| eAspLys{Th}++ ++{r}TyrLeuIleProTrp 458229 : CGATAAA{AC}gt.........................ag{A}TACTTGATTCCATGG : 458556 340 : TyrLeuAlaProLeuGlnIleGlnLysLeuThrLeuPheLeuLeuGlnArgSerAsnL : 359 |||! !|||||||||!:!|||||||||! ! !||||||:!!! !:!!||||||!!.! TyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleSerGluArgSerLysA 458557 : TACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATATCAGAACGCAGCAAAA : 458616 360 : ysAlaPheAlaLeuSerLeuGlyGlyLeuPheThrLeuSerIleGluCysPheAlaSe : 378 :!!.! !:!!|||!!!:!! !|||:!!.!!! ! |||...||| ||||||:! rgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPheGluPhePheAlaTh 458617 : GAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatccttcgaatttttcgccaC : 458673 379 : rLeuValSerAla : 382 !:!!..!!.!:!! rValThrLysSer 458674 : GGTAACAAAATCT : 458687 vulgar: CbirOr491 292 382 . KQ414815.1 458113 458687 + 166 M 41 123 S 0 2 5 0 2 I 0 300 3 0 2 S 1 1 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458114 458687 166 + . gene_id 1 ; sequence CbirOr491 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 458114 458238 . + . KQ414815.1 exonerate:protein2genome:local exon 458114 458238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 458239 458240 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 458239 458542 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 458541 458542 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458543 458687 . + . KQ414815.1 exonerate:protein2genome:local exon 458543 458687 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458114 458687 166 + . alignment_id 1 ; Query CbirOr491 ; Align 458114 293 123 ; Align 458544 335 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr488 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 124 -> 213 Target range: 457147 -> 457411 125 : ValThrLeuPheSerGlyCysCysLeuLeuIleLeuSerLeuLeuProIleLeuProT : 144 :!!|||:!!! !!!! !||| !! !|||:!!:!!!!! !|||! !:!!!!!||| IleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheProI 457148 : ATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGA : 457205 145 : rpIleLeuGlyThrPheLeuLeuValAsnGluSerArgProLeuTyrAsnMetGlnIl : 163 :!!|||! !! ! ! :!!! !:!!|||||||||||||||! ! .!.:!: ! :! leLeuLeuAspIleValValProLeuAsnGluSerArgProCys---GluLeuTyrLe 457206 : TATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGT---GAGTTATACCT : 457259 164 : eValThrGluTyrPheValAspLysAspLysThrPheTyrLeuIleLeuLeuHisThr : 182 !..!.!!|||||||||||||||! ! ! ||| !.!.:!!! !|||:!! !|||! ! uThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIle 457260 : TACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATT : 457316 183 : TyrValSerValCysIleGlyIleIleAlaMetCysAlaAlaGlyMetMetLeuValA : 202 !..!!!!:!! |||!.! !! !.!!:!: ||| !! ! :!:|||:!!. IleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleT 457317 : ATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAA : 457376 203 : laTyrLeuLysHisValCysGlyValPheSerIle : 213 !! !!:!! !||||||||||||:!!|||!.!:!! hrAsnValLeuHisValCysGlyLeuPheLysLeu 457377 : CGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr488 124 213 . KQ414815.1 457147 457411 + 125 M 34 102 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457148 457411 125 + . gene_id 1 ; sequence CbirOr488 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457148 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457148 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457148 457411 125 + . alignment_id 1 ; Query CbirOr488 ; Align 457148 125 102 ; Align 457250 160 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr488 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 326 -> 397 Target range: 476676 -> 476964 327 : IleGluHisTyrAsnAspMetPheThrValAlaTyrAsnIleArgTrpTyrThrAlaP : 346 :::... |||...... ! ! ! ! !|||||| !..!||||||||||||| LeuHisPheTyrThrSerArg***IleTyrArgTyrAsnSerGluTrpTyrThrAlaP 476677 : ttacatttttatacgtcACGATGAATTTATAGATACAACTCTGAATGGTACACAGCGC : 476734 347 : roValArgIleGlnArgLeuIleLeuPheLeuLeuGlnArgSerCysLysIleTyrGl : 365 ||:!! ||||||:::|||:::......:::::! !|||!!! ||| ! ! roLeuSerIleGlnLysLeuLeuPheLeuIleIleLeuArgThrThrLysProProIl 476735 : CGTTATCcattcaaaaattattatttcttataatATTACGAACAACGAAACCACCCAT : 476791 366 : yLeuLysIleGlyGlyLeuPheIleAlaSerLeuGluGlyPheAlaSer >>>> Ta : 382 !! !||| !! ! !:!!!:!! !||||||:!!|||.!!|||.!! ! eSerLysAlaValPheValTyrThrAlaSerMetGluSerPheThrVal++ 476792 : TTCGAAGGCAGTGTTCGTATATACTGCATCGATGGAAAGTTTCACGGTGgt....... : 476844 383 : rget Intron 1 >>>> LeuPheThrAlaSerIleSerTyrPheThrValLeuTy : 394 75 bp ||| ! ! !:!!|||:!:|||||||||! !|||:!!|| ++LeuValLysSerSerValSerTyrPheMetValIleTy 476845 : ..................agCTGGTAAAATCATCAGTGTCTTATTTCATGGTGATATA : 476953 395 : rSerThrGln : 397 ||||! !||| rSerIleGln 476954 : CTCTATCCag : 476964 vulgar: CbirOr488 326 397 . KQ414815.1 476676 476964 + 117 M 55 165 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 476677 476964 117 + . gene_id 2 ; sequence CbirOr488 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 476677 476841 . + . KQ414815.1 exonerate:protein2genome:local exon 476677 476841 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 476842 476843 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 476842 476916 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 476915 476916 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 476917 476964 . + . KQ414815.1 exonerate:protein2genome:local exon 476917 476964 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 476677 476964 117 + . alignment_id 2 ; Query CbirOr488 ; Align 476677 327 165 ; Align 476917 382 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr488 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 337 -> 391 Target range: 458543 -> 458705 338 : TyrAsnIleArgTrpTyrThrAlaProValArgIleGlnArgLeuIleLeuPheLeuL : 357 ||| |||! !|||||| !||||||:!!|||||||||!:!! !:!!||||||:!!! TyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleS 458544 : TACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATAT : 458601 358 : euGlnArgSerCysLysIleTyrGlyLeuLysIleGlyGlyLeuPheIleAlaSerLe : 376 !:!!|||||| !:!:!: !..!||| !!: !|||:!!.!!|||||||||.. erGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPh 458602 : CAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatcctt : 458658 377 : uGluGlyPheAlaSerLeuPheThrAlaSerIleSerTyrPheThr : 391 .||| ||||||:!!:!! ! !:!!!!!::: :::|||::: eGluPhePheAlaThrValThrLysSerTrpLeu***HisPheSer 458659 : cgaatttttcgccaCGGTAACAAAATCTTGGCtatgacatttttct : 458705 vulgar: CbirOr488 337 391 . KQ414815.1 458543 458705 + 108 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458544 458705 108 + . gene_id 3 ; sequence CbirOr488 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 458544 458705 . + . KQ414815.1 exonerate:protein2genome:local exon 458544 458705 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458544 458705 108 + . alignment_id 3 ; Query CbirOr488 ; Align 458544 338 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr488 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 338 -> 379 Target range: 490203 -> 490326 339 : AsnIleArgTrpTyrThrAlaProValArgIleGlnArgLeuIleLeuPheLeuLeuG : 358 !:!:!:!.!|||||||||||||||:!! !||||||!:!|||:!:|||.!!:!!:!!| SerValAsnTrpTyrThrAlaProIleAlaIleGlnLysLeuLeuLeuIleIleMetG 490204 : AGCGTGAATTGGTACACGGCTCCAATTGCCATACAAAAATTGCTGTTGATCATTATGC : 490261 359 : lnArgSerCysLysIleTyrGlyLeuLysIleGlyGlyLeuPheIleAlaSerLeuGl : 377 ||!.!!!! ::!! !! !..!:!!! !:!! !|||:!!!:!|||:!!|||!!!!! lnAsnThrIleArgAsnSerSerIleThrLeuPheGlyMetTyrIleSerSerPheAs 490262 : AAAATACTATACGAAATTCTTCAATAACACTCTTCGGAATGTATATATCGTCTTTCGA : 490318 378 : uGlyPhe : 379 :|||||| pGlyPhe 490319 : TGGTTTC : 490326 vulgar: CbirOr488 338 379 . KQ414815.1 490203 490326 + 101 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 490204 490326 101 + . gene_id 4 ; sequence CbirOr488 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 490204 490326 . + . KQ414815.1 exonerate:protein2genome:local exon 490204 490326 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 490204 490326 101 + . alignment_id 4 ; Query CbirOr488 ; Align 490204 339 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr494PNC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 47 -> 165 Target range: 457177 -> 457825 48 : ThrLeuSerGlyMetGlnTrpTrpProTrpPheLeuAspMetIleIleProLysAsnG : 67 ..!:!!!!! !:!!||| !::||| !!.||||||!!::!::!!||| !|||| ValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnG 457178 : GTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACG : 457235 68 : luThrTyrThrHisHisLeuIleValLeuLeuSerLysTyrTyrAspValGlnGluLy : 86 ||:!! ! !! !.!.||| !||| !:!!:!!|||!:!! !! !..!:!!|| luSerArgProCysGluLeu---TyrLeuThrAlaGluTyrPheValAspMetLysLy 457236 : AATCACGCCCCTGTGAGTTA---TACCTTACAGCGGAATACTTTGTCGACATGAAAAA : 457289 87 : sTyrTyrTyrPheIleLeuLeuHisLeuSerAlaThrIleThrValGlySerPheAla : 105 |||| :!!!:!|||:!! !|||:!!! !.!! !:!! !:!!!.!:!! !.!! sTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThr 457290 : GTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACG : 457346 106 : LeuValAlaValAlaThrMetMetLeuSerTyrAlaLysHisIleCysGlyMetPheA : 125 |||..!||| !! !:!!:!::!::!!!!! !!!.! !|||:!!||||||:!!|||! LeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheL 457347 : TTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCA : 457406 126 : rgIleAla{Se} >>>> Target Intron 1 >>>> {r}TyrArgLeuGluGl : 133 :!:!!.!!{||} 303 bp {|}||||||||||||!! ysLeuThr{Se}++ ++{r}TyrArgLeuGluHi 457407 : AGCTTACT{AG}gt.........................ag{C}TATAGATTAGAACA : 457733 134 : nAlaMetThrIleAsnThrLeuGlnSerIleSerLeuLysThrGluIleValIleTyr : 152 .:!!:!! ! ! !|||! !|||!.!:!:.!! !! ! !..! ! ||| sSerLeuAspHisValThrSerGlnLysLeuGlySerThrLysArg------ThrTyr 457734 : CTCTTTGGACCACGTTACCTCACAAAAATTGGGAAGTACCAAGAGA------ACGTAC : 457784 153 : LysGluIleValTyrAlaValAspIleHisArgLysAla : 165 !..!:!::!! ! ||||||:!!||||||||||||||| ValArgLeuIleGluAlaValAsnIleHisArgLysAla 457785 : GTGAGGCTGATTGAAGCTGTTAACATACACAGAAAAGCT : 457825 vulgar: CbirOr494PNC 47 165 . KQ414815.1 457177 457825 + 139 M 26 78 G 1 0 M 53 159 S 0 2 5 0 2 I 0 299 3 0 2 S 1 1 M 20 60 G 2 0 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457178 457825 139 + . gene_id 1 ; sequence CbirOr494PNC ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 457178 457416 . + . KQ414815.1 exonerate:protein2genome:local exon 457178 457416 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local splice5 457417 457418 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 457417 457719 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457718 457719 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457720 457825 . + . KQ414815.1 exonerate:protein2genome:local exon 457720 457825 . + . insertions 0 ; deletions 2 KQ414815.1 exonerate:protein2genome:local similarity 457178 457825 139 + . alignment_id 1 ; Query CbirOr494PNC ; Align 457178 48 78 ; Align 457256 75 159 ; Align 457721 129 60 ; Align 457781 151 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr494PNC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 164 -> 242 Target range: 479300 -> 479599 165 : AlaMetLysPheAlaLysPheLeuIleAsnSerMetGluArgSerPheLeuSerValI : 184 :!! !:!||| ! ! !:!!|||!....! !! !:!!!:! ! !:!!: SerArgArgPhePheHisAspValIleArgAspSerIleProAlaTyrSerValLeuL 479301 : TCTCGAAGGTTTTTTCACGATGTGATAAGGGACTCTATACCAGCGTACAGTGTTCTCC : 479358 185 : leMetIleThrValLeuCysValSerPheAsnLeuTyrArg >>>> Target Int : 198 !!:!!.!!.!!:!! !! :!!|||.!!|||||||||||| 65 bp euLeuPheAlaIleThrSerLeuSerIleAsnLeuTyrArg++ 479359 : TTTTGTTCGCTATCACCTCGTTGAGCATTAATTTGTATCGTgt............... : 479402 199 : ron 1 >>>> IleSerGlnThrGluSerPheThrGluAsnValGluGluThrLeuI : 213 |||||||||.!!! !!!! ! !!!:.!.:!!||||||||||||| ++IleSerGlnAlaValThrHisLeuAspGluIleGluGluThrLeuI 479403 : ..........agATATCGCAAGCAGTGACTCATTTAGACGAAATCGAAGAAACATTGA : 479510 214 : leHisLeuLeuIleIleThrPheThrLeuLeuTyrMetPheLeuAlaAsnTyrThrGl : 232 || |||:!!.!! :!! ! !||| !||||||!:!! ! !:!!|||! ! leThrLeuMetPheAlaSerGlyGluLeuSerTyrMetTyrTyrLeuHisTyrIleLe 479511 : TCACACTGATGTTTGCGTCTGGCGAGCTAAGTTACATGTACTACTTGCATTATATAct : 479567 233 : yGlnGluIleThrAspTyrAsnAsnHisVal : 242 |||:::||| |||::!::!:!!:!!:!! uGlnLysIleIleAspHisSerAspAsnLeu 479568 : tcagaaaataattgatcaCTCTGATAATCTT : 479599 vulgar: CbirOr494PNC 164 242 . KQ414815.1 479300 479599 + 104 M 33 99 5 0 2 I 0 61 3 0 2 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 479301 479599 104 + . gene_id 2 ; sequence CbirOr494PNC ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 479301 479399 . + . KQ414815.1 exonerate:protein2genome:local exon 479301 479399 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 479400 479401 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 479400 479464 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 479463 479464 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 479465 479599 . + . KQ414815.1 exonerate:protein2genome:local exon 479465 479599 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 479301 479599 104 + . alignment_id 2 ; Query CbirOr494PNC ; Align 479301 165 99 ; Align 479465 198 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr494PNC Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 246 -> 290 Target range: 458543 -> 458675 247 : TyrAsnIleProTrpTyrGlnAlaProLeuHisIleGlnLysLeuIleLeuValLeuI : 266 ||| ||||||||||||!::|||||||||!..|||||||||! !:!!||| !!:!! TyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleS 458544 : TACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATAT : 458601 267 : leGlnArgSerAsnLysThrPheThrLeuAsnIleGlyGlyLeuPheThrLeuSerLe : 285 !:!!||||||!!.!:!..! !:!!||| !!!: !|||:!!.!!! ! |||.. erGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPh 458602 : CAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatcctt : 458658 286 : uGluCysPheAlaSer : 290 .||| ||||||:!! eGluPhePheAlaThr 458659 : cgaatttttcgccaCG : 458675 vulgar: CbirOr494PNC 246 290 . KQ414815.1 458543 458675 + 102 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458544 458675 102 + . gene_id 3 ; sequence CbirOr494PNC ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 458544 458675 . + . KQ414815.1 exonerate:protein2genome:local exon 458544 458675 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458544 458675 102 + . alignment_id 3 ; Query CbirOr494PNC ; Align 458544 247 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr477 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 218 Query range: 95 -> 220 Target range: 456822 -> 457411 96 : PheLysTyrIlePheSerArgLeuArgTyrAspTrpLysMetLeuLysAsnGlnThrG : 115 .!.::! ! |||!:!..!!.!:!! ! !!||||||||| |||||||||..! !| IleArgGluIleTyrAspAsnIleAlaAspAspTrpLysSerLeuLysAsnMetGluG 456823 : ATACGGGAGATTTACGACAATATCGCTGACGATTGGAAATCATTGAAGAACATGGAAG : 456880 116 : luPheAspIleIleGlnLysTyrAlaAspArgThrArgPheHisThrThrLeuPheTh : 134 ||.!!!::||||||:::|||||||||:!! !! !||| !||| ! !.!..! luIleGluIleIleArgLysTyrAlaAsnGlyGlyArgArgPheThrLeuAlaIleAl 456881 : AAATCGagattattcgaaaatatgcGAACGGTGGCAGGAGATTTACACTTGCAATAGC : 456937 135 : r{L} >>>> Target Intron 1 >>>> {eu}LeuAlaThrSerValCysLeu : 142 !{:} 214 bp {!!}! !.!! !!!!! !...||| a{I}++ ++{le}SerThrTyrCysGlyAlaLeu 456938 : A{A}gt.........................ag{TT}TCTACTTATTGTGGCGCACTG : 457175 143 : GlyIleValValLeuCysSerValProSerIleLeuAspIleIleIleProLeuAsnG : 162 ! !|||..!..!||| ! !!|||! !:!!|||||||||:!::!!|||||||||| ValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnG 457176 : GTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACG : 457235 163 : luSerArgProSerTrpLeuProIleValAlaGluTyrPheValAspGlnGluArgTy : 181 |||||||||||!!! !||| !:!!..!||||||||||||||||||..!:!!!:!|| luSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTy 457236 : AATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTA : 457292 182 : rPheTyrValIleValIleHisIlePheIleValLeuTyrAlaGlyCysMetValLeu : 200 |.!.:!! !|||:!! ||||||.!!! !||| !!.!..!! ..!||| rMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeu 457293 : TATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTA : 457349 201 : ValAlaSerGlyGlyMetIleLeuGlyTyrValMetHisAsnCysAlaIlePheLysI : 220 ..!|||!:!! !..!:!::!!:!! ! !!|||:!!||| !|||!.!:!:||||||: ThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysL 457350 : ACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGC : 457409 221 : le : 220 !! eu 457410 : TT : 457411 vulgar: CbirOr477 95 220 . KQ414815.1 456822 457411 + 218 M 39 117 S 0 1 5 0 2 I 0 210 3 0 2 S 1 2 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 456823 457411 218 + . gene_id 1 ; sequence CbirOr477 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 456823 456940 . + . KQ414815.1 exonerate:protein2genome:local exon 456823 456940 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 456941 456942 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 456941 457154 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457153 457154 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457155 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457155 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 456823 457411 218 + . alignment_id 1 ; Query CbirOr477 ; Align 456823 96 117 ; Align 457157 136 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr477 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 151 -> 220 Target range: 485719 -> 485926 152 : SerIleLeuAspIleIleIleProLeuAsnGluSerArgProSerTrpLeuProIleV : 171 |||||||||||||||:!:|||||||||||| ! !!!|||||| !! !:!!|||||| SerIleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleA 485720 : AGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAA : 485777 172 : alAlaGluTyrPheValAspGlnGluArgTyrPheTyrValIleValIleHisIlePh : 190 !:!!|||:!!||||||||||||:!!!:!||||||||| !|||!.! !|||:!! ! snSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValVa 485778 : ACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGT : 485834 191 : eIleValLeuTyrAlaGlyCysMetValLeuValAlaSerGlyGlyMetIleLeuGly : 209 !:!! !!:!! ! !|||...!!:||||||:!!::!::: :::|||:::..! lLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAla 485835 : TCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCG : 485891 210 : TyrValMetHisAsnCysAlaIlePheLysIle : 220 :!!..!|||!.!|||!.!:!:!:!! !||| IleIleGlnHisThrCysGlyLeuTyrThrIle 485892 : ATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr477 151 220 . KQ414815.1 485719 485926 + 174 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485720 485926 174 + . gene_id 2 ; sequence CbirOr477 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485720 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485720 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485720 485926 174 + . alignment_id 2 ; Query CbirOr477 ; Align 485720 152 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr477 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 169 Query range: 96 -> 220 Target range: 464391 -> 464840 97 : LysTyrIlePheSerArgLeuArgTyrAspTrpLysMetLeuLysAsnGlnThrGluP : 116 !:! :!!|||! !|||:!!||||||||||||!!.! !|||:!!||| ! !|||! ArgLeuLeuPheLeuArgValArgTyrAspTrpAsnThrLeuGlnAsnThrAspGluT 464392 : AGACTGCTTTTTTTACGGGTGAGATATGACTGGAACACGCTACAAAACACGGATGAAT : 464449 117 : heAspIleIleGlnLysTyrAlaAspArgThrArgPheHisThrThrLeuPheThr{L : 135 :!:!!|||:!::!!||||||.!!!!:!!!.!!! !.!! !!.!! !:!! ! !{: yrAsnIleLeuLysLysTyrThrGluSerAlaThrLeuValAsnLysIleHisLeu{M 464450 : ATAATATTCTGAAAAAGTATACCGAGAGCGCTACACTTGTTAACAAAATCCACTTA{A : 464506 136 : } >>>> Target Intron 1 >>>> {eu}LeuAlaThrSerValCysLeuGly : 143 } 74 bp {!!}! ! !! ! !!||| ||| ! }++ ++{et}CysPheIleProValIleLeuPhe 464507 : }gt.........................ag{TG}TGCTTCATTCCCGTTATACTGTTC : 464604 144 : IleValValLeuCysSerValProSerIleLeuAspIleIleIleProLeuAsnGluS : 163 ||| !:!!||| !:!!|||..!|||||||||:!::!! ||||||||||||| IleCysLeuLeuGluValLeuProAspIleLeuAspValValAlaProLeuAsnGluS 464605 : ATCTGTTTACTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATGAAT : 464664 164 : erArgProSerTrpLeuProIleValAlaGluTyrPheVal<->AspGlnGluArgTy : 181 ||||| !! ! ! ! !|||..!||||||!:!|||:!! |||.....!! ! ! erArgSerHisGlnTyrLeuIleThrAlaGluPhePheIleThrAspSerSerProAs 464665 : CTCGTTCTCATCAATACTTAATTACCGCGGAATTTTTCATCACTGATAGTTCGCCGAA : 464721 182 : rPheTyrValIleValIleHisIlePheIleValLeuTyrAlaGlyCysMetValLeu : 200 !!:! !|||! ! !:!! !! !|||..!||| ! !||| !! !..!:!! nTyrIleValThrCysValGlyThrAspIleThrLeuIleMetGlyValThrThrIle 464722 : TTATATCGTAACTTGTGTTGGTACGGATATTACTCTTATCATGGGAGTCACGACAATA : 464778 201 : ValAlaSerGlyGlyMetIleLeuGlyTyrValMetHisAsnCysAlaIlePheLysI : 220 :!!||||||! ! !.!.! !!!! !! :!!...|||! !||||||!!:||||||| IleAlaSerGluThrPheThrPheLeuLeuLeuGlnHisIleCysAlaMetPheLysI 464779 : ATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAATGTTCAAAA : 464838 221 : le : 220 || le 464839 : TC : 464840 vulgar: CbirOr477 96 220 . KQ414815.1 464391 464840 + 169 M 38 114 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 41 123 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464392 464840 169 + . gene_id 3 ; sequence CbirOr477 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 464392 464506 . + . KQ414815.1 exonerate:protein2genome:local exon 464392 464506 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 464507 464508 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 464507 464580 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 464579 464580 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 464581 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464581 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464392 464840 169 + . alignment_id 3 ; Query CbirOr477 ; Align 464392 97 114 ; Align 464583 136 123 ; Align 464709 177 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr477 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 137 -> 221 Target range: 471561 -> 471813 138 : ThrSerValCysLeuGlyIleValValLeuCysSerValProSerIleLeuAspIleI : 157 |||!:!:!! !:!! !! !|||:!!|||! !! ! !||| !||||||||||||| ThrAsnLeuLeuIleThrSerValIleLeuSerMetSerProLeuIleLeuAspIleI 471562 : ACGAATCTACTCATTACTAGTGTAATACTGTCCATGTCGCCTCTTATTCTCGATATTA : 471619 158 : leIleProLeuAsnGluSerArgProSerTrpLeuProIleValAlaGluTyrPheVa : 176 |||||||||||||| !||||||||| !!!::!!!|||.!!..! !!!:!:!.!! leIleProLeuAsnThrSerArgProArgTyrPheProPheThrPheAspPheIlePr 471620 : TAATACCTCTGAACACGTCACGTCCACGTTACTTTCCATTTACGTTCGATTTCATTCC : 471676 177 : lAspGlnGluArgTyrPheTyrValIleValIleHisIlePheIleValLeuTyrAla : 195 !:!!||||||..!||||||!! !|||..!||| ! ! !|||:!!! ! !..! oAsnGlnGluGluTyrPhe***ProIleThrIlePheSerGlyIleLeuCysIleCys 471677 : CAATCAAGAGGAATACTTCTAACCGATTACTATCTTTTCTGGCATATTGTGCATTTGT : 471733 196 : GlyCysMetValLeuValAlaSerGlyGlyMetIleLeuGlyTyrValMetHisAsnC : 215 |||! !.!:!!:!!::!|||! !|||:!!:!!:!! ! !!|||:!:||| GlyLeuAlaAlaMetIleSerSerGluGlyLeuLeuMetMetAsnValLeuHisValA 471734 : GGATTAGCAGCAATGATAAGTAGCGAGGGTCTGCTTATGATGAATGTTTTACACGTAC : 471793 216 : ysAlaIlePheLysIleAla : 221 !!!.!:!:!:!!!.|||||| rgGlyLeuTyrAsnIleAla 471794 : GTGGATTGTATAACATCGCT : 471813 vulgar: CbirOr477 137 221 . KQ414815.1 471561 471813 + 146 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471562 471813 146 + . gene_id 4 ; sequence CbirOr477 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471562 471813 . + . KQ414815.1 exonerate:protein2genome:local exon 471562 471813 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471562 471813 146 + . alignment_id 4 ; Query CbirOr477 ; Align 471562 138 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr477 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 127 -> 220 Target range: 475491 -> 475770 128 : PheHisThrThrLeuPheThrLeuLeuAlaThrSerValCysLeuGlyIleValValL : 147 ||| ...::: !|||:!!|||!.! ! !!..! !!! !!!::!!:!!| PheValGlyAsnIleValThrValLeuValTyrProThrIlePheThrMetIleLeuL 475492 : ttcgttgggaatattgtTACAGTACTGGTATACCCAACAATATTCACCATGATATTGC : 475549 148 : euCysSerValProSerIleLeuAspIleIleIleProLeuAsnGluSerArgProSe : 166 || !! ! ! !!!.!||||||||| !:!::!!||||||||||||||||||||||| euLeuPheSerSerLysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSe 475550 : TTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAG : 475606 167 : rTrpLeuProIleValAlaGluTyrPheValAspGlnGluArgTyrPheTyrValIle : 185 ||||! !! !||| |||||||||:::::::!!:!!!:!|||||||||:!!! ! rTrpSerLeuIleArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSer 475607 : CTGGTCTCTGAtacgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGC : 475663 186 : ValIleHisIlePheIleValLeuTyrAlaGlyCysMetValLeuValAlaSerGlyG : 205 ||||||:!! !:!!..!:!! ! ! ! !!! ..!! !||||||!!!! !! ValIleTyrGlnThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluA 475664 : GTGATCTATCAGACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAG : 475723 206 : lyMetIleLeuGlyTyrValMetHisAsnCysAlaIlePheLysIle : 220 .!!!:.!! ! !!:::!!...||| ! ::::::|||:::||| laIlePheThrMetTrpLeuGlnHisCysIleSerLeuPheGluIle 475724 : CAATATTTACCATGTGGTTGCAACATTGCATaagtttatttgaaatt : 475770 vulgar: CbirOr477 127 220 . KQ414815.1 475491 475770 + 145 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475492 475770 145 + . gene_id 5 ; sequence CbirOr477 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475492 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475492 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475492 475770 145 + . alignment_id 5 ; Query CbirOr477 ; Align 475492 128 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr477 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 143 -> 220 Target range: 482001 -> 482235 144 : IleValValLeuCysSerValProSer<->IleLeuAspIleIleIleProLeuAsnG : 162 |||:!!:!!|||||| !:!! !!||| :!!||||||:!!|||:!!|||||||||| IleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValProLeuAsnG 482002 : ATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTCCTCTAAACG : 482059 163 : luSerArgProSerTrpLeuProIleValAlaGluTyrPheValAspGlnGluArgTy : 181 ||!!!||| !! ! !!!|||:!! ! !|||||||||:!!||||||:!!!:!|| luThrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGlnGlnLysTy 482060 : AGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCAGCAGAAATA : 482116 182 : rPheTyrValIleValIleHisIlePheIleValLeuTyrAlaGlyCysMetValLeu : 200 |! ! !!|||..!.!!||| !::.!! !!!! !!.!! !...! !:!!:!! rSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAlaThrIleIle 482117 : TTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCAACGATCATT : 482173 201 : ValAlaSerGlyGlyMetIleLeuGlyTyrValMetHisAsnCysAlaIlePheLysI : 220 |||!.!! !! ! !:!!|||:!! !!:::!! ||| !...::!:!:|||! : ValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerLeuPheThrL 482174 : GTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCTTGTTCACCC : 482233 221 : le : 220 !! eu 482234 : TT : 482235 vulgar: CbirOr477 143 220 . KQ414815.1 482001 482235 + 126 M 9 27 G 0 3 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482002 482235 126 + . gene_id 6 ; sequence CbirOr477 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482002 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 482002 482235 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482002 482235 126 + . alignment_id 6 ; Query CbirOr477 ; Align 482002 144 27 ; Align 482032 153 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr477 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 340 -> 385 Target range: 465779 -> 465914 341 : TyrAsnThrGluTrpTyrThrAlaProLeuTrpLeuGlnLysLeuIleLeuPheIleM : 360 |||:!!|||:!!||||||! ! !|||||| !|||||||||:!::!!||||||| TyrAspThrGlnTrpTyrArgLeuProLeuProAlaGlnLysLeuValIlePheIleM 465780 : TACGATACGCAATGGTATAGACTTCCTTTACCTGCACAAAAATTAGTGATTTTCATTA : 465837 361 : etGlnArgSerSerIleLysSerThrPheThrAlaGlyGlyIlePheAspAlaSerLe : 379 |||||||||||! !! !!..!:!..!||||||!.! !! !:!!!:!! ! !!|||! etGlnArgSerMetLysSerAsnValPheThrValCysLysLeuTyrValProSerAr 465838 : TGCAAAGAAGCATGAAAAGTAATGTGTTCACAGTGTGCAAACTCTACGTTCCCTCGCG : 465894 380 : uGluGlyPheAlaLysLeu : 385 !:!!||| !!||||||:!! gGlnGlyValAlaLysVal 465895 : ACAAGGTGTCGCAAAGGTA : 465914 vulgar: CbirOr477 340 385 . KQ414815.1 465779 465914 + 108 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 465780 465914 108 + . gene_id 7 ; sequence CbirOr477 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 465780 465914 . + . KQ414815.1 exonerate:protein2genome:local exon 465780 465914 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 465780 465914 108 + . alignment_id 7 ; Query CbirOr477 ; Align 465780 341 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr477 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 340 -> 388 Target range: 441705 -> 441849 341 : TyrAsnThrGluTrpTyrThrAlaProLeuTrpLeuGlnLysLeuIleLeuPheIleM : 360 ||||||:!! |||||| !!.!|||||| ! !|||||||||:!!|||||||||| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 361 : etGlnArgSerSerIleLysSerThrPheThrAlaGlyGlyIlePheAspAlaSerLe : 379 ||..!!:!|||!!!||| !!!!! !.!.!.! !..!|||||||||! ! !!!!!! etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 380 : uGluGlyPheAlaLysLeuMetSerMet : 388 !:!!||||||:!!..!:!!!!:!!!:!: rLysGlyPheSerSerValIleCysLeu 441821 : CAAAGGTTTTTCCTCGGTAATTTGTCTT : 441849 vulgar: CbirOr477 340 388 . KQ414815.1 441705 441849 + 107 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441849 107 + . gene_id 8 ; sequence CbirOr477 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441706 441849 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441849 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441849 107 + . alignment_id 8 ; Query CbirOr477 ; Align 441706 341 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr477 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 340 -> 388 Target range: 445817 -> 445961 341 : TyrAsnThrGluTrpTyrThrAlaProLeuTrpLeuGlnLysLeuIleLeuPheIleM : 360 ||||||:!! |||||| !!.!|||||| ! !|||||||||:!!|||||||||| TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 361 : etGlnArgSerSerIleLysSerThrPheThrAlaGlyGlyIlePheAspAlaSerLe : 379 ||..!!:!|||!!!||| !!!!! !.!!!.! !..!|||||||||! ! !!!!!! etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 380 : uGluGlyPheAlaLysLeuMetSerMet : 388 !:!!||||||:!!..!:!!!!:!!!:!: rLysGlyPheSerSerValIleCysLeu 445933 : CAAAGGTTTTTCCTCGGTAATTTGTCTT : 445961 vulgar: CbirOr477 340 388 . KQ414815.1 445817 445961 + 107 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 445961 107 + . gene_id 9 ; sequence CbirOr477 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445818 445961 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445961 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 445961 107 + . alignment_id 9 ; Query CbirOr477 ; Align 445818 341 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr477 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 340 -> 395 Target range: 487029 -> 487194 341 : TyrAsnThrGluTrpTyrThrAlaProLeuTrpLeuGlnLysLeuIleLeuPheIleM : 360 ||||||:!!|||||||||! ! !|||:!! ! ||||||::::::|||.!!:!:| TyrAsnSerGluTrpTyrArgIleProValAlaGluGlnLysValLeuLeuLeuLeuM 487030 : TACAATTCAGAATGGTACAGAATCCCTGTAGCGGAacaaaaagtattattacTCCTGA : 487087 361 : etGlnArgSerSerIleLysSerThrPheThrAlaGlyGlyIlePheAspAlaSerLe : 379 |||||!.!|||! !! ! ! ..!! !.!! ! !|||||||||.!! !||||||!! etGlnAsnSerLeuLysAspAspMetIleLeuLeuGlyGlyIleIleProAlaSerPh 487088 : TGCAAAATAGTTTAAAAGATGATATGATCCTACTTGGCGGAATTATTCCTGCATCTTT : 487144 380 : uGluGlyPheAlaLysLeuMetSerMetSerMetSerTyrValMetPhe : 395 !:!!||||||:!! !:!!! ... :::::: :::::: ||| eGlnGlyPheSerLeuValAsnGlyGluThrIlePhePheIleProPhe 487145 : CCAGGGATTTTCACTGGTAAACGgggaaacgatatttttcattcctttt : 487194 vulgar: CbirOr477 340 395 . KQ414815.1 487029 487194 + 104 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 487030 487194 104 + . gene_id 10 ; sequence CbirOr477 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 487030 487194 . + . KQ414815.1 exonerate:protein2genome:local exon 487030 487194 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 487030 487194 104 + . alignment_id 10 ; Query CbirOr477 ; Align 487030 341 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr477 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 334 -> 382 Target range: 490182 -> 490326 335 : AsnValPheArgThrThrTyrAsnThrGluTrpTyrThrAlaProLeuTrpLeuGlnL : 354 |||:!!.!!!.!! ! ! !!!:!..!.!.|||||||||||||||:!! :!!|||| AsnIleLeuAsnArgCysAsnSerValAsnTrpTyrThrAlaProIleAlaIleGlnL 490183 : AACATACTTAATAGATGCAACAGCGTGAATTGGTACACGGCTCCAATTGCCATACAAA : 490240 355 : ysLeuIleLeuPheIleMetGlnArgSerSerIleLysSerThrPheThrAlaGlyGl : 373 |||||:!:|||.!!|||||||||!.!!!!! ! !!!.|||:!!.!.||| ! !|| ysLeuLeuLeuIleIleMetGlnAsnThrIleArgAsnSerSerIleThrLeuPheGl 490241 : AATTGCTGTTGATCATTATGCAAAATACTATACGAAATTCTTCAATAACACTCTTCGG : 490297 374 : yIlePheAspAlaSerLeuGluGlyPhe : 382 |!!:!:! :!!|||!!!!!:|||||| yMetTyrIleSerSerPheAspGlyPhe 490298 : AATGTATATATCGTCTTTCGATGGTTTC : 490326 vulgar: CbirOr477 334 382 . KQ414815.1 490182 490326 + 103 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 490183 490326 103 + . gene_id 11 ; sequence CbirOr477 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 490183 490326 . + . KQ414815.1 exonerate:protein2genome:local exon 490183 490326 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 490183 490326 103 + . alignment_id 11 ; Query CbirOr477 ; Align 490183 335 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr484PSE(F/S) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 121 -> 223 Target range: 448019 -> 448322 122 : LeuThrIleArgLeuMetIleProMetValCysGlyMetPheSerAsnPheIleIleV : 141 ||| ... ::: ::: !.!.!.!! ..!:!:.!!||| ! !:!::!!! LeuIlePheThrIleSerValValPheAlaLeuSerLeuIleSerPheThrLeuValG 448020 : ctcattttcacaatttcagtGGTGTTTGCCTTGTCTTTAATTAGCTTTACCTTGGTTG : 448077 142 : alTyrSerProTyrIleLeuAspValValMetProLysAsnGluSerTyrAlaIleHi : 160 !!:! ! !:::...||||||::::::||||||! !|||! !||| .!! || luPheValValHisPheLeuAspIleLeuMetProMetAsnValSer---ThrArgHi 448078 : AGTTCGTGGTAcattttctcgatattttaATGCCAATGAACGTATCT---ACACGGCA : 448131 161 : sValMetGluMetValThrLysTyrPheIleValSerGluLysTyrTyrPheLeuVal : 179 |! !:!: .!.:!!! !:!!! !||| !! !..!!!:|||!:!!:! !! !:!! sGluLeuProPheLeuIleGlnCysPheCysAspGlnAspLysPhePheHisTyrIle 448132 : CGAGCTACCCTTCCTAATTCAATGTTTCTGTGATCAAGATAAATTCTTCCACTATATA : 448188 180 : LeuValHisLeuAsnValAlaCysThrAlaGlyLeuIleValThrValGlyThrGlyT : 199 |||||| !|||! !||| ! !! ! !||| !! !|||..!:!!!.!||| !| LeuValPheLeuIleValLeuThrIleLeuGlyGlySerValValLeuAlaThrThrT 448189 : TTAGTTTTCTTGATCGTTCTCACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAA : 448248 200 : hrMetMetLeuSerTyrPheLysHisAlaCysGlyMetPheGluIleAlaSerTyrAr : 218 ||! |||! !!:! !:!!|||..!||||||:!!|||:!!||||||.!!!! .. hrThrTyrLeuIlePheSerGlnHisCysCysGlyLeuPheLysIleAlaGly***Gl 448249 : CGACTTACTTGATATTCAGTCAACATTGTTGTGGATTGTTCAAAATTGCAGGGTAAGA : 448305 219 : gIleGluGlnAlaMet : 223 !||| ! |||||| uIleMetThrAlaMet 448306 : AATTATGACTGCTATG : 448322 vulgar: CbirOr484PSE(F/S) 121 223 . KQ414815.1 448019 448322 + 111 M 35 105 G 1 0 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448020 448322 111 + . gene_id 1 ; sequence CbirOr484PSE(F/S) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448020 448322 . + . KQ414815.1 exonerate:protein2genome:local exon 448020 448322 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 448020 448322 111 + . alignment_id 1 ; Query CbirOr484PSE(F/S) ; Align 448020 122 105 ; Align 448125 158 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr483INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 57 -> 156 Target range: 457123 -> 457417 58 : AsnAlaLysArgPheThrPheIleIleIleLeuPheAlaIleCysGlyValPheThrI : 77 ||| |||::: !!:|||! !:!!! !.!! !||||||!.!.!...!| AsnAspLysLysLysProSerMetIleThrValSerThrTyrCysGlyAlaLeuValI 457124 : aatgataaaaaaaaaccttcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTA : 457181 78 : leSerPheLeuSerIleTrpProCysIleLeuGlyValIleLeuProLeuLysAlaSe : 96 ||!!! |||..!:!!!::||| :!!|||! !:!!:!::!!||||||!!.! !|| leThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSe 457182 : TTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATC : 457238 97 : rArgSerArgSerAlaMetGlnValValThrGluTyrPheIleAspGlnGluLysTyr : 115 |||| !! !!!! !:!: ! :!!..!.!!|||||||||:!!|||..!:!!|||||| rArgPro---CysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyr 457239 : ACGCCCC---TGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTAT : 457292 116 : PheTyrLeuIleLeuLeuHisMetAsnValThrIleTyrIleGlyAlaThrAlaValI : 135 .!.:!!! !|||:!! !|||!!:! !..! !:!! |||!.!||||||.!!:!!! MetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuT 457293 : ATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAA : 457352 136 : leAlaThrGlyThrMetLeuMetGlyTyrLeuLysHisIleCysGlyMetPheSerIl : 154 !|||!.!! !:!!:!:|||!!: ! !!:!! !|||:!!||||||:!!|||!.!:! hrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLe 457353 : CAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCT : 457409 155 : eAlaArg : 156 !.!!||| uThrArg 457410 : TACTAGG : 457417 vulgar: CbirOr483INT 57 156 . KQ414815.1 457123 457417 + 161 M 41 123 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457124 457417 161 + . gene_id 1 ; sequence CbirOr483INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457124 457417 . + . KQ414815.1 exonerate:protein2genome:local exon 457124 457417 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457124 457417 161 + . alignment_id 1 ; Query CbirOr483INT ; Align 457124 58 123 ; Align 457247 100 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr483INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 85 -> 154 Target range: 485722 -> 485926 86 : IleLeuGlyValIleLeuProLeuLysAlaSerArgSerArgSerAlaMetGlnValV : 105 ||||||! !:!!:!::!!||||||!!. !!!!||| !!|||!!! !!:! :!! IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThr---IleProIleA 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACG---ATTCCTATAA : 485777 106 : alThrGluTyrPheIleAspGlnGluLysTyrPheTyrLeuIleLeuLeuHisMetAs : 124 !:!!|||:!!|||:!!||||||:!!||||||||||||! !||| ! !|||:!: snSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValVa 485778 : ACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGT : 485834 125 : nValThrIleTyrIleGlyAlaThrAlaValIleAlaThrGlyThrMetLeuMetGly : 143 !:!! !:!! !|||||||||! !!.!:!!:!!::!||| ::::::|||..! lLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAla 485835 : TCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCG : 485891 144 : TyrLeuLysHisIleCysGlyMetPheSerIle : 154 :!!:!!|||! !||||||:!!!:!!!!||| IleIleGlnHisThrCysGlyLeuTyrThrIle 485892 : ATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr483INT 85 154 . KQ414815.1 485722 485926 + 139 M 15 45 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485926 139 + . gene_id 2 ; sequence CbirOr483INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485926 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 485723 485926 139 + . alignment_id 2 ; Query CbirOr483INT ; Align 485723 86 45 ; Align 485768 102 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr483INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 3 -> 156 Target range: 474789 -> 475776 4 : IleGlnThrHisPheAsnLeuAsnArgIleLeuMetLeuAlaValGlyLeuTrpProT : 23 :!!!!. !:!!!:!|||!!!!.! ! ! !|||! !|||:!!||||||||||||| LeuHisGluAsnTyrAsnPheThrValSerThrMetSerAlaIleGlyLeuTrpProT 474790 : TTACACGAGAACTATAACTTCACTGTATCAACTATGTCAGCGATTGGACTTTGGCCGT : 474847 24 : yrGlnArgSerLysPheIleGluPheGlnMetIleLeuPhePheGlyIleLeuThrSe : 42 ||!:!!.!! !!!..!! !..!!!.|||! .!! !.!! !! !|||!!! !:! yrArgAsnIleAsnIleArgArgLeuGlnAsnPheGlyIleAsnValIlePhePheAl 474848 : ATCGAAATATAAACATTCGTCGATTACAGAATTTCGGGATTAACGTTATATTCTTCGC : 474904 43 : rPheValIlePheGlnValSerAlaIleIleGlnArgTyrGlyAsnAsnAlaLysArg : 61 !.!.:!!.!!.!.:!!|||||| ! ||| !!!:!! ! :::... aLeuLeuPheLeuGluValSerLeuSerIle***LysCysValSerThrLeuIle*** 474905 : CCTGTTGTTCCTAGAGGTATCACTTTCGATATAAAAATGTgtttctaccttaatttaa : 474961 62 : {P} >>>> Target Intron 1 >>>> {he}ThrPheIleIleIleLeuPheA : 70 { } 531 bp {!!} |||::!! !:!!.!.! {V}-+ -+{al}GlyAsnIleValThrValLeuV 474962 : {g}at.........................cg{tt}gggaatattgtTACAGTACTGG : 475519 71 : laIleCysGlyValPheThrIleSerPheLeuSerIleTrpProCysIleLeuGlyVa : 89 .! ! !:!!||||||!!:! !!!.||| !.!!! ! !! ||||||! ! alTyrProThrIlePheThrMetIleLeuLeuLeuPheSerSerLysIleLeuAspSe 475520 : TATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTC : 475576 90 : lIleLeuProLeuLysAlaSerArgSerArgSerAlaMetGlnValValThrGluTyr : 108 !:!:|||||||||!!.! !|||||| !!!!!!!!:!!:!! ::: |||||| rLeuLeuProLeuAsnGluSerArgProSerTrpSerLeu---IleArgIleGluTyr 475577 : TTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTG---Atacgaatagaatat : 475630 109 : PheIleAspGlnGluLysTyrPheTyrLeuIleLeuLeuHisMetAsnValThrIleT : 128 ||||||::::!!:!!|||||||||||||||! !:!!:!!:!!..!!.!||||||||| PheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrValThrIleL 475631 : ttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGTAACGATCC : 475690 129 : yrIleGlyAlaThrAlaValIleAlaThrGlyThrMetLeuMetGlyTyrLeuLysHi : 147 !:!: !!.!|||.!! !:!!||||||! !.!!!!:!!!! !!::|||:!!|| euLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrpLeuGlnHi 475691 : TTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGGTTGCAACA : 475747 148 : sIleCysGlyMetPheSerIleAlaArg : 156 | ! ...:::|||...|||...||| sCysIleSerLeuPheGluIleValArg 475748 : TTGCATaagtttatttgaaattgttagG : 475776 vulgar: CbirOr483INT 3 156 . KQ414815.1 474789 475776 + 135 M 58 174 S 0 1 5 0 2 I 0 527 3 0 2 S 1 2 M 40 120 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 474790 475776 135 + . gene_id 3 ; sequence CbirOr483INT ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 474790 474964 . + . KQ414815.1 exonerate:protein2genome:local exon 474790 474964 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 474965 474966 . + . intron_id 1 ; splice_site "AT" KQ414815.1 exonerate:protein2genome:local intron 474965 475495 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 475494 475495 . + . intron_id 0 ; splice_site "cg" KQ414815.1 exonerate:protein2genome:local cds 475496 475776 . + . KQ414815.1 exonerate:protein2genome:local exon 475496 475776 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 474790 475776 135 + . alignment_id 3 ; Query CbirOr483INT ; Align 474790 4 174 ; Align 475498 63 120 ; Align 475618 104 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr483INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 104 -> 157 Target range: 478635 -> 478794 105 : ValThrGluTyrPheIleAspGlnGluLysTyrPheTyrLeuIleLeuLeuHisMetA : 124 ..!||||||||||||||||||::::::||||||||| ...|||::: |||:!! ThrThrGluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValT 478636 : ACCACGGAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGT : 478693 125 : snValThrIleTyrIleGlyAlaThrAlaValIleAlaThrGlyThrMetLeuMetGl : 143 !!:!!:!!:!: !!: !||||||!.! !:!!||||||! !:!! :!!!!: yrLeuSerLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMe 478694 : ACCTGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTAT : 478750 144 : yTyrLeuLysHisIleCysGlyMetPheSerIleAlaArgTyr : 157 !!:::!! !|||! ! !|||:!!!:!!:!||| !|||||| tTrpMetValHisThrIleGlyLeuTyrAsnIleIleArgTyr 478751 : GTGGATGGTGCATACTATCGGCTTGTATAATATCATAAGGTAT : 478794 vulgar: CbirOr483INT 104 157 . KQ414815.1 478635 478794 + 115 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478636 478794 115 + . gene_id 4 ; sequence CbirOr483INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478636 478794 . + . KQ414815.1 exonerate:protein2genome:local exon 478636 478794 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478636 478794 115 + . alignment_id 4 ; Query CbirOr483INT ; Align 478636 105 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr483INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 85 -> 156 Target range: 482031 -> 482241 86 : IleLeuGlyValIleLeuProLeuLysAlaSerArgSerArgSerAlaMetGlnValV : 105 :!!|||! !||||||:!!||||||!!.! !!!!|||!!!!.!..! .!.! !||| ValLeuAspValIleValProLeuAsnGluThrArgThrHisGln---PheProValS 482032 : GTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAA---TTTCCAGTAT : 482086 106 : alThrGluTyrPheIleAspGlnGluLysTyrPheTyrLeuIleLeuLeuHisMetAs : 124 !! !||||||||||||||||||:!!||||||! !!!!||| !!!!|||..! erMetGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTr 482087 : CAATGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTG : 482143 125 : nValThrIleTyrIleGlyAlaThrAlaValIleAlaThrGlyThrMetLeuMetGly : 143 !!:!!.!! !:!!! !|||||| !:!!:!!!.!! !! !|||:!!:!!:!: ! pPheSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMet 482144 : GTTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATG : 482200 144 : TyrLeuLysHisIleCysGlyMetPheSerIleAlaArg : 156 !::|||:!!||| !....!!:!!|||!!!:!!!.!||| TrpLeuGluHisAlaAlaSerLeuPheThrLeuValArg 482201 : TGGCTTGAACACGCTGCAAGCTTGTTCACCCTTGTAAGG : 482241 vulgar: CbirOr483INT 85 156 . KQ414815.1 482031 482241 + 112 M 15 45 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482032 482241 112 + . gene_id 5 ; sequence CbirOr483INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482032 482241 . + . KQ414815.1 exonerate:protein2genome:local exon 482032 482241 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 482032 482241 112 + . alignment_id 5 ; Query CbirOr483INT ; Align 482032 86 45 ; Align 482077 102 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr481 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 129 Query range: 123 -> 214 Target range: 130436 -> 130166 124 : LysValLeuThrIlePheSerIlePheGlyValPheGlyLeuIleSerValProIleL : 143 ...:!!:!! !!:!:||||||.!!!!. !:!!.!!|||!!!:!!! !:!!! !|||| SerIleIleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleL 130436 : TCCATTATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTC : 130379 144 : euProHisIleIleAspValSerTrpProAlaAsnLysSerArgArgCysSerSerSe : 162 |||||!!.|||:!!! !:!!! !! ||| !!.!:!!! ! !.! !!:!!.!! euProGlnIleLeuGlyIleIleSerProLeuThrGluIle---AsnThrAsnLysLe 130378 : TCCCGCAAATTTTAGGCATAATTTCACCTCTAACCGAGATC---AATACTAACAAATT : 130325 163 : rGlnIleLeuThrGluTyrPheIleAspGlnGluLysTyrPheTyrLeuIleLeuVal : 181 !! :!!! !||||||||||||:!!||| ! :!! ! |||.!!||||||||| !:!! uLeuValArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIle 130324 : ACTCGTTCGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATC : 130268 182 : HisMetTyrAlaAlaLeuTyrValGlyAlaAlaAlaMetValSerThrGlyAlaMetS : 201 ||| ! ! !|||:!! !.!!!.!.!! !...:!!|||!:!! ! :::: HisAlaThrIleAlaIleMetCysSerValThrMetGlnIleSerSerAspIleLeuA 130267 : CACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttga : 130208 202 : erValValTyrPheGlnHisValCysGlyMetPheLysVal : 214 :: ::::::.....!|||:!! !!|||||||||:!!||| snAsnIlePheMetMetHisIleSerGlyMetPheGluVal 130207 : ataacatatttatGATGCACATCAGTGGAATGTTCGAGGTA : 130167 vulgar: CbirOr481 123 214 . KQ414817.1 130436 130166 - 129 M 33 99 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130167 130436 129 - . gene_id 1 ; sequence CbirOr481 ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130167 130436 . - . KQ414817.1 exonerate:protein2genome:local exon 130167 130436 . - . insertions 0 ; deletions 1 KQ414817.1 exonerate:protein2genome:local similarity 130167 130436 129 - . alignment_id 1 ; Query CbirOr481 ; Align 130437 124 99 ; Align 130338 158 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr477 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 157 Query range: 103 -> 265 Target range: 130517 -> 129936 104 : ArgTyrAspTrpLysMetLeuLysAsnGlnThrGluPheAspIleIleGlnLysTyrA : 123 !:!|||:!! ! :!:!!!:::!!.:!!! !:!!!:! !! !! !::!:!! LysTyrAsnMetLeuLeuPheArgLysGluIleGlnTyrTyrSerSerArgGluThrP 130517 : AAATATAATATGCTTTTATTTCGTAAGGAAATCCAGTATTATTCCAGTAGGGAGACAT : 130460 124 : laAspArgThrArgPheHisThrThrLeuPheThrLeuLeuAlaThrSerValCysLe : 142 !:!!! !! !! !.!! !! !:!!:!!.!! !!:!!!!!:!! !! !:!! !|| heAsnProLysMetIleAspPheSerIleIleProValPheSerPheLeuLeuLeuLe 130459 : TTAACCCTAAAATGATCGATTTTTCCATTATTCCAGTGTTCTCATTTTTGCTACTCCT : 130403 143 : uGlyIleValValLeuCysSerValProSerIleLeuAspIleIleIleProLeuAsn : 161 ||||.!!||| !!||| ! !:!!|||..!||||||! !|||||| !||||||!.! uGlyPheValPheLeuGlnIleLeuProGlnIleLeuGlyIleIleSerProLeuThr 130402 : TGGTTTCGTTTTCTTGCAAATTCTCCCGCAAATTTTAGGCATAATTTCACCTCTAACC : 130346 162 : GluSerArgProSerTrpLeuProIleValAlaGluTyrPheValAspGlnGluArgT : 181 |||! !!.! !!!:! |||! !:!! !.!!||||||||||||||| ! :!! !| GluIleAsnThrAsnLysLeuLeuValArgThrGluTyrPheValAspTyrLysAspT 130345 : GAGATCAATACTAACAAATTACTCGTTCGAACCGAATACTTTGTCGACTACAAAGATT : 130286 182 : yrPheTyrValIleValIleHisIlePheIleValLeuTyrAlaGlyCysMetValLe : 200 ||.!!|||:!!|||..!|||||| !|||!.!:!! ..!.!! ! :!!! yrIleTyrLeuIleThrIleHisAlaThrIleAlaIleMetCysSerValThrMetGl 130285 : ACATTTATCTAATCACGATCCACGCGACTATAGCAATAATGTGTAGTGTGACTATGCA : 130229 201 : uValAlaSerGlyGlyMetIleLeuGlyTyrValMetHisAsnCysAlaIlePheLys : 219 !:!!::!|||! ! ::: :::::!||||||! ! !!!.!!!:|||:!! nIleSerSerAspIleLeuAsnAsnIlePheMetMetHisIleSerGlyMetPheGlu 130228 : AATTAGCAGCGATAttttgaataacatatttatGATGCACATCAGTGGAATGTTCGAG : 130172 220 : IleAla{Il} >>>> Target Intron 1 >>>> {e}TyrArgIleGluHisI : 228 :!! !{ } 95 bp { } ! !:!!||||||: ValIle{Gl}++ ++{y}IleValValGluHisL 130171 : GTAATT{GG}gt.........................ag{G}ATTGTTGTCGAGCATC : 130050 229 : lePheAspGluLysIleLeuGlnMetSerLysHisValArgGluTyrValLeuTyrGl : 247 !:||||||:!! ! ! ! ..!!!. !! !..!.!. :!!!!!||| euPheAspLysCysLysSerAlaAspGluAsnIleAspGluAsnLeuIlePheTyrTh 130049 : TGTTCGACAAATGCAAAAGTGCTGACGAGAATATCGACGAAAATCTGATTTTCTACAC : 129993 248 : uArgLeuIleHisAlaValHisLeuHisArgArgAlaValAspLeuAlaAsnIle : 265 !||||||:!:!.! !:!!:!!:!!||||||||| ::: |||!.!::::!! rArgLeuLeuArgIleMetAsnMetHisArgArgAsnLeuLysLeuValSerVal 129992 : ACGGTTGCTGCGTATTATGAACATGCacagaagaaatttaaagttaGTGTCAGTT : 129937 vulgar: CbirOr477 103 265 . KQ414817.1 130517 129936 - 157 M 118 354 S 0 2 5 0 2 I 0 91 3 0 2 S 1 1 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 129937 130517 157 - . gene_id 1 ; sequence CbirOr477 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 130162 130517 . - . KQ414817.1 exonerate:protein2genome:local exon 130162 130517 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 130160 130161 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 130067 130161 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 130067 130068 . - . intron_id 0 ; splice_site "AG" KQ414817.1 exonerate:protein2genome:local cds 129937 130066 . - . KQ414817.1 exonerate:protein2genome:local exon 129937 130066 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 129937 130517 157 - . alignment_id 1 ; Query CbirOr477 ; Align 130518 104 354 ; Align 130066 223 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr478 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 338 -> 398 Target range: 128557 -> 128303 339 : TyrAsnAlaProTrpTyrLeuValProLeuLysIleGlnLysLeuIleLeuPheLeuL : 358 ||| !||| !|||||| !!.!|||:::||| ||||||::::!!|||||||||: TyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheLeuM 128557 : TATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCCTCA : 128500 359 : euGlnArgSerAsnLysAlaPheThrLeuAspIleGlyGlyLeuPheThrLeuSerIl : 377 !!!!.|||! !! :!! !!! !! !||| ! :!: !..!||| !!.!! !.!!! etHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGlyAs 128499 : TGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGGTAA : 128443 378 : eGluSerPheAlaSer >>>> Target Intron 1 >>>> LeuValSerThrS : 387 !|||! !!:!|||!!! 74 bp :!!|||..!|||. nGluLeuTyrAlaThr++ ++MetValGlnThrG 128442 : CGAGTTGTACGCTACCgt.........................agaTGGTGCAGACTG : 128339 388 : erValSerTyrPheThrValLeuLeuSerLeuArg : 398 !! !!||||||||||||||||||! !||||||!:! lyPheSerTyrPheThrValLeuTyrSerLeuGln 128338 : GTTTCTCCTACTTTACGGTTCTCTACTCGTTGCAA : 128304 vulgar: CbirOr478 338 398 . KQ414817.1 128557 128303 - 109 M 44 132 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128304 128557 109 - . gene_id 1 ; sequence CbirOr478 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128557 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128557 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128304 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128304 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128304 128557 109 - . alignment_id 1 ; Query CbirOr478 ; Align 128558 339 132 ; Align 128352 383 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr483INT Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 64 -> 154 Target range: 130433 -> 130166 65 : IleIleIleLeuPheAlaIleCysGlyValPheThrIleSerPheLeuSerIleTrpP : 84 |||||| !:!!|||:!!.!!! !:!!.!! !.!! !||||||..!||| | IleIleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuP 130433 : ATTATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCC : 130376 85 : roCysIleLeuGlyValIleLeuProLeuLysAlaSerArgSerArgSerAlaMetGl : 103 || |||||||||:!!|||! !||||||! ! !! !!.!!!!!.!!.! !:!: roGlnIleLeuGlyIleIleSerProLeuThrGluIleAsnThrAsnLysLeuLeu-- 130375 : CGCAAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAACAAATTACTC-- : 130319 104 : nValValThrGluTyrPheIleAspGlnGluLysTyrPheTyrLeuIleLeuLeuHis : 122 ||| !||||||||||||:!!||| ! :!! ! |||.!!||||||||| !:!!||| -ValArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHis 130318 : -GTTCGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCAC : 130265 123 : MetAsnValThrIleTyrIleGlyAlaThrAlaValIleAlaThrGlyThrMetLeuM : 142 !!.!:!!.!!||| !.!!!.!||| ! !|||::!!:!! !! ::: AlaThrIleAlaIleMetCysSerValThrMetGlnIleSerSerAspIleLeuAsnA 130264 : GCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaata : 130205 143 : etGlyTyrLeuLysHisIleCysGlyMetPheSerIle : 154 :::::!! !|||||| !!|||||||||..!:!! snIlePheMetMetHisIleSerGlyMetPheGluVal 130204 : acatatttatGATGCACATCAGTGGAATGTTCGAGGTA : 130167 vulgar: CbirOr483INT 64 154 . KQ414817.1 130433 130166 - 132 M 38 114 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130167 130433 132 - . gene_id 1 ; sequence CbirOr483INT ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130167 130433 . - . KQ414817.1 exonerate:protein2genome:local exon 130167 130433 . - . insertions 0 ; deletions 1 KQ414817.1 exonerate:protein2genome:local similarity 130167 130433 132 - . alignment_id 1 ; Query CbirOr483INT ; Align 130434 65 114 ; Align 130320 104 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr483INT Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 267 -> 332 Target range: 128569 -> 128300 268 : PheThrThrValTyrAsnValLysTrpTyrMetAlaProLeuAsnIleGlnLysMetM : 287 !!.||| ! !||| !!.!|||||||||! ||||||:::... |||||||||: LeuThrPheSerTyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetL 128569 : TTAACATTTAGCTATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgC : 128512 288 : etLeuPheLeuLeuGlnArgGlyThrLysValPheAsnLeuAsnIleGlyGlyValPh : 306 !:|||||||||:!!!!.||| !! !:!! !! !!..|||!!.:!: !..!:!! ! euLeuPheLeuMetHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuVa 128511 : TACTGTTCCTCATGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGT : 128455 307 : eValAlaSerLeuGluSerAlaAlaThr >>>> Target Intron 1 >>>> L : 316 !!.!|||.!! !|||! ! !|||||| 74 bp : lAlaAlaGlyAsnGluLeuTyrAlaThr++ ++M 128454 : TGCCGCGGGTAACGAGTTGTACGCTACCgt.........................aga : 128351 317 : euThrSerLeuSerIleSerTyrPheThrValLeuTyrSerThrArgLys : 332 !!..!..! !.!!.!!|||||||||||||||||||||||| !!:!:!! etValGlnThrGlyPheSerTyrPheThrValLeuTyrSerLeuGlnGlu 128350 : TGGTGCAGACTGGTTTCTCCTACTTTACGGTTCTCTACTCGTTGCAAGAA : 128301 vulgar: CbirOr483INT 267 332 . KQ414817.1 128569 128300 - 112 M 48 144 5 0 2 I 0 70 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128301 128569 112 - . gene_id 2 ; sequence CbirOr483INT ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128569 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128569 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128301 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128301 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128301 128569 112 - . alignment_id 2 ; Query CbirOr483INT ; Align 128570 268 144 ; Align 128352 316 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr482NTE Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 261 -> 319 Target range: 128548 -> 128300 262 : GlnTrpTyrValAlaProLeuArgThrGlnLysLeuIleLeuPheLeuLeuGlnArgG : 281 :!!|||||| !||||||:::::::::||||||::::!!|||||||||:!!!!.||| LysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheLeuMetHisArgP 128548 : AAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCCTCATGCACAGAT : 128491 282 : lyAsnThrIlePheAsnLeuArgIleAlaGlyValPheThrGlySerPheGluCysPh : 300 !! ! ! !!..|||!:!:!: !..!:!! !!.!!!.!.!! !|||! !: heMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGlyAsnGluLeuTy 128490 : TCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGGTAACGAGTTGTA : 128434 301 : eAlaThr >>>> Target Intron 1 >>>> MetThrLysGlnAlaIleSerT : 310 !|||||| 74 bp |||..!:!! !.!.!!|||| rAlaThr++ ++MetValGlnThrGlyPheSerT 128433 : CGCTACCgt.........................agaTGGTGCAGACTGGTTTCTCCT : 128330 311 : yrPheThrValIleTyrSerThrGlnGln : 319 |||||||||||:!!|||||| !|||:!! yrPheThrValLeuTyrSerLeuGlnGlu 128329 : ACTTTACGGTTCTCTACTCGTTGCAAGAA : 128301 vulgar: CbirOr482NTE 261 319 . KQ414817.1 128548 128300 - 112 M 41 123 5 0 2 I 0 70 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128301 128548 112 - . gene_id 1 ; sequence CbirOr482NTE ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128548 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128548 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128301 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128301 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128301 128548 112 - . alignment_id 1 ; Query CbirOr482NTE ; Align 128549 262 123 ; Align 128352 303 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr477 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 143 -> 220 Target range: 1243836 -> 1243605 144 : IleValValLeuCysSerValProSerIleLeuAspIleIleIleProLeuAsnGl : 162 .!!|||:!!!!! ! !:!!||| !!|||||||||:!!:!! !||||||||||| PheValLeuPheProLeuIleProProIleLeuAspValValSerProLeuAsnGl 1243836 : TTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGA : 1243782 163 : uSerArgProSerTrpLeuProIleValAlaGluTyrPheValAspGlnGluArgT : 181 |!!!||| !! !! ||| :::|||.!. !!|||...|||::: uThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspMetGluLysA 1243781 : GACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACAtggagaaga : 1243725 182 : yrPheTyrValIleValIleHisIlePheIleValLeuTyrAlaGlyCysMetVal : 199 |||||| ::: :!!:!!! ! ! !! !!:! ! ! |||||| snPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMetVal 1243724 : atttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTT : 1243671 200 : LeuValAlaSerGlyGlyMetIleLeuGlyTyrValMetHisAsnCysAlaIlePh : 218 :!!:!!.!!! !! !!.!:!: !:!!! ! !:!! |||!..|||!.!:!!|| IleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGlyLeuPh 1243670 : ATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTTATT : 1243614 219 : eLysIle : 220 | :!! eAlaVal 1243613 : CGCTGTT : 1243606 vulgar: CbirOr477 143 220 . KQ414851.1 1243836 1243605 - 108 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243836 108 - . gene_id 1 ; sequence CbirOr477 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243836 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243836 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243836 108 - . alignment_id 1 ; Query CbirOr477 ; Align 1243837 144 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr477 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 149 -> 220 Target range: 1224246 -> 1224030 150 : ValProSerIleLeuAspIleIleIleProLeuAsnGluSerArgProSerTrpLe : 168 :!! ! !!:!!||||||:!!:!! ||||||||||||!!!|||||| !! !!|| IleAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLe 1224246 : ATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCT : 1224192 169 : uProIleValAlaGluTyr<->PheValAspGlnGluArgTyrPheTyrValIleV : 186 | !:!! !!.!...||| |||:!!|||:!! ! ..!:!!|||||| !:!: uLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValA 1224191 : TTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGA : 1224135 187 : alIleHisIlePheIleValLeuTyrAlaGlyCysMetValLeuValAlaSerGly : 204 !.!!|||:!!!:!! ! !:!! !:!! !! ! |||:!!:!!:!!||| !! ! snPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAsp 1224134 : ATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGAT : 1224081 205 : GlyMetIleLeuGlyTyrValMetHisAsnCysAlaIlePheLysIle : 220 !:!: !:!! ! !:!!.!.||| !|||!.!:!:||| !:!: MetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaVal 1224080 : ATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: CbirOr477 149 220 . KQ414851.1 1224246 1224030 - 108 M 25 75 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224246 108 - . gene_id 2 ; sequence CbirOr477 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224246 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224246 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224246 108 - . alignment_id 2 ; Query CbirOr477 ; Align 1224247 150 75 ; Align 1224169 175 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr497IC Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 163 Query range: 123 -> 212 Target range: 1243875 -> 1243608 124 : IleTyrPheSerIleLeuLeuTyrIleMetSerSerAlaPheIleIleValProLe : 142 :!!! !.!!||| ! !|||!:! !.!.|||! ! !|||:!!:!! !!||||| ValSerLeuSerGlyThrLeuPheTyrPheSerIleIlePheValLeuPheProLe 1243875 : GTCTCTCTTTCAGGTACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATT : 1243821 143 : uLysProIlePheLeuAspIleIleLeuProLeuAsnGluSerArgProArgPheP : 161 |! ||| !.!.||||||:!!:!!! !||||||||||||!!!||| !!|||.!. uIleProProIleLeuAspValValSerProLeuAsnGluThrArgSerArgIleG 1243820 : AATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAG : 1243764 162 : heAlaIleGluLeuGluCysArgLeuAspLysAsnGluHisPheLeuLeuLeuTyr : 179 ...|||:::|||::: !!!!|||! ...::::::||| |||||| luValIleLysLeuGlnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuTyr 1243763 : aagtaataaaattgcaataccTGTTCGACAtggagaagaatttttattcattatac : 1243710 180 : PheTyrThrThrThrIleIleValValGlyIleThrIleIleValAlaIleAspTh : 198 !!|||||| ! ! ! !!:!! !!!:! !:!!|||:!!.!!||||||.! ValTyrThrGlyTrpCysSerPheMetThrMetMetValIleIleThrIleAspAl 1243709 : GTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGC : 1243653 199 : rValTyrValIleSerThrThrHisAlaCysSerLeuPheAla : 212 !:!!||||||:!!! !! ! !|||.!!|||.!!||||||||| aLeuTyrValValIleIleHisHisThrCysGlyLeuPheAla 1243652 : GTTATATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCT : 1243609 vulgar: CbirOr497IC 123 212 . KQ414851.1 1243875 1243608 - 163 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243609 1243875 163 - . gene_id 1 ; sequence CbirOr497IC ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243609 1243875 . - . KQ414851.1 exonerate:protein2genome:local exon 1243609 1243875 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243609 1243875 163 - . alignment_id 1 ; Query CbirOr497IC ; Align 1243876 124 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr497IC Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 143 Query range: 123 -> 212 Target range: 1234338 -> 1234068 124 : IleTyrPheSerIleLeuLeuTyrIleMetSerSerAlaPheIleIleValProLe : 142 :!:!:!|||||| ! !||| !.!.! ! !!.!|||:!::!:|||||||| ValPhePheSerAspThrLeuLeuSerPheMetValValPheLeuLeuValProLe 1234338 : GTGTTCTTCTCAGATACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATT : 1234284 143 : uLysProIlePheLeuAspIleIleLeuProLeuAsnGluSerArgProArgPheP : 161 | ! !|||||||||:!!:!!|||||||||||||||!!!||||||||| uValPheProPheLeuAspValValLeuProLeuAsnGluThrArgProArgGlnG 1234283 : AGTTTTTCCATTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGC : 1234227 162 : heAlaIleGluLeuGlu<->CysArgLeuAspLysAsnGluHisPheLeuLeuLeu : 178 !.!.!!..!:!!.!. !!!!|||:!! !!::!!|||!!! !:!! lnGlyPheArgValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSerVal 1234226 : AAGGATTCAGAGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTG : 1234173 179 : TyrPheTyrThrThrThrIleIleValValGlyIleThrIleIleValAlaIleAs : 197 |||||| ! !.!! ! ! !||||||! !:!!! !||||||:!!.!!:!!|| TyrPheGlnLeuAlaTrpGlyAlaValValValValMetIleIleIleThrValAs 1234172 : TACTTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGA : 1234116 198 : pThrValTyrValIleSerThrThrHisAlaCysSerLeuPheAla : 212 |:!!:!!|||:!!|||! !! ! !|||||| !!.!!:!!|||||| pSerLeuTyrMetIleIleIleHisHisAlaSerGlyMetPheAla 1234115 : CTCGTTGTACATGATAATAATTCACCATGCCAGCGGAATGTTCGCC : 1234069 vulgar: CbirOr497IC 123 212 . KQ414851.1 1234338 1234068 - 143 M 43 129 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234069 1234338 143 - . gene_id 2 ; sequence CbirOr497IC ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234069 1234338 . - . KQ414851.1 exonerate:protein2genome:local exon 1234069 1234338 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234069 1234338 143 - . alignment_id 2 ; Query CbirOr497IC ; Align 1234339 124 129 ; Align 1234207 167 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr497IC Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 123 -> 212 Target range: 1224303 -> 1224033 124 : IleTyrPheSerIleLeuLeuTyrIleMetSerSerAlaPheIleIleValProLe : 142 ::: |||||| !|||!::|||:!: !! !!.!!:!!!:! ! !!||||| LeuIlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLe 1224303 : ttaattttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATT : 1224249 143 : uLysProIlePheLeuAspIleIleLeuProLeuAsnGluSerArgProArgPheP : 161 |! ! ! !!||||||:!!:!! !||||||||||||!!!||||||||| . uIleAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgL 1224248 : GATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGC : 1224192 162 : heAlaIleGluLeuGlu<->CysArgLeuAspLysAsnGluHisPheLeuLeuLeu : 178 !! !:!! !:!!... !:!!|||:!! !!|||||||||! ! !:!! euLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerVal 1224191 : TTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTG : 1224138 179 : TyrPheTyrThrThrThrIleIleValValGlyIleThrIleIleValAlaIleAs : 197 !!|||:!! ! !|||! !:!::!! ! !! ! !!!:|||:!!|||:!:|| AsnPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAs 1224137 : AATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGA : 1224081 198 : pThrValTyrValIleSerThrThrHisAlaCysSerLeuPheAla : 212 |! !:!!|||:!!! !! !! ! !||| !|||.!!||||||||| pMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAla 1224080 : TATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCA : 1224034 vulgar: CbirOr497IC 123 212 . KQ414851.1 1224303 1224033 - 128 M 43 129 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224034 1224303 128 - . gene_id 3 ; sequence CbirOr497IC ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224034 1224303 . - . KQ414851.1 exonerate:protein2genome:local exon 1224034 1224303 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224034 1224303 128 - . alignment_id 3 ; Query CbirOr497IC ; Align 1224304 124 129 ; Align 1224172 167 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr497IC Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 121 -> 212 Target range: 1240106 -> 1239830 122 : PheThrIleTyrPheSerIleLeuLeuTyrIleMetSerSerAlaPheIleIleVa : 140 !:!! ! !|||.!!|||:!!:!!|||!:! ::: |||::::!:|| TyrIleTyrTyrIleSerValValLeuPheSerValLeuPheIlePheLeuValVa 1240106 : TACATATATTACATTTCAGTCGTTTTATTTTCcgttttgttcatttttctggTGGT : 1240052 141 : lProLeuLysProIlePheLeuAspIleIleLeuProLeuAsnGluSerArgProA : 159 ||||::: ||| ...|||||||||:!! !||||||||||||!!!||| !!| lProIlePheProProLeuLeuAspIleLeuLysProLeuAsnGluThrArgAlaA 1240051 : TCcgatttttcctcctcttctggACATTTTAAAACCTTTAAACGAAACCCGAGCAC : 1239995 160 : rgPhePheAlaIleGluLeuGlu<->CysArgLeuAspLysAsnGluHisPheLeu : 176 || ...::::::... ! !:!!|||!:!:!!|||!!. !||| rgGlnLysIlePheLysValAsnTyrLeuIleIleAspArgAspGluGlnAlaLeu 1239994 : gccagaaaatattcaaagttaaTTACCTGATCATTGACAGGGATGAACAAGCTCTG : 1239941 177 : LeuLeuTyrPheTyrThrThrThrIleIleValValGlyIleThrIleIleValAl : 195 :!! !||||||:!! !:!! !! !! !:!!..! ! ! ! !:!::!!:: IleThrTyrPheHisLeuSerTrpThrThrIleThrLeuGlyIleSerValLeuSe 1239940 : ATCACATATTTTCACTTGTCTTGGACAACTATCACTCTTGGGATATCTGTGCTTAG : 1239884 196 : aIleAspThrValTyrValIleSerThrThrHisAlaCysSerLeuPheAla : 212 ! !!!: !:!!||||||:!! !! ! !|||.!! !!.!!||||||||| rSerGluLeuIleTyrValLeuLeuIleHisHisThrSerGlyLeuPheAla 1239883 : CTCAGAATTGATATACGTCCTTCTTATTCATCATACCAGCGGTCTGTTTGCT : 1239831 vulgar: CbirOr497IC 121 212 . KQ414851.1 1240106 1239830 - 119 M 45 135 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239831 1240106 119 - . gene_id 4 ; sequence CbirOr497IC ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239831 1240106 . - . KQ414851.1 exonerate:protein2genome:local exon 1239831 1240106 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239831 1240106 119 - . alignment_id 4 ; Query CbirOr497IC ; Align 1240107 122 135 ; Align 1239969 167 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr497IC Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 119 -> 212 Target range: 1229518 -> 1229233 120 : ArgLysPheThrIleTyrPheSerIle<->LeuLeuTyrIleMetSerSerAlaPh : 137 |||:!! !:!!||| ||||||:!! !||| !.!! ! !!!!!.!|| ArgGluSerSerIleValPheSerLeuAspAlaLeuLeuPheAlaMetCysValPh 1229518 : CGCGAAAGTTCCATCGTATTTTCCTTAGATGCTTTACTCTTCGCAATGTGTGTTTT : 1229464 138 : eIleIleValProLeuLysProIlePheLeuAspIleIleLeuProLeuAsnGluS : 156 |:!::!:||||||||| ! ! !|||||||||:!!||||||! !||||||! eLeuLeuValProLeuPheGlyProAlaLeuAspIleValLeuProSerAsnGluT 1229463 : CTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCGTCCTTCCATCAAATGAAA : 1229407 157 : erArgProArgPhePheAlaIleGluLeuGluCysArgLeu<->AspLysAsnGlu : 173 !!||||||||| !.!!..!:!!.!.! !! !:!! |||:!! !!: hrArgProArgGlnGlnLeuPheArgValAsnTyrIleIlePheAspGlnAlaAsp 1229406 : CTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAATTTTCGACCAAGCAGAC : 1229353 174 : HisPheLeuLeuLeuTyrPheTyrThrThrThrIleIleValValGlyIleThrIl : 192 :!!|||!!!! !:!!|||.!! ! ! ! ! !! !:!!||| !:!!! ! TyrPhePheTyrValTyrIleGlnLeuPheTrpCysThrIleValLeuValMetAl 1229352 : TATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACAATCGTTCTTGTAATGGC : 1229296 193 : eIleValAlaIleAspThrValTyrValIleSerThrThrHisAlaCysSerLeuP : 211 !|||:!!.!!:!!|||:!!:!!|||:!!|||! !! ! !|||||| !!.!!:!!| aIleIleThrValAspSerLeuTyrMetIleIleIleTyrHisAlaSerGlyMetP 1229295 : CATTATCACCGTAGATTCATTGTACATGATCATAATTTACCATGCCAGCGGAATGT : 1229239 212 : heAla : 212 ||||| heAla 1229238 : TCGCT : 1229234 vulgar: CbirOr497IC 119 212 . KQ414851.1 1229518 1229233 - 110 M 9 27 G 0 3 M 41 123 G 0 3 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229234 1229518 110 - . gene_id 5 ; sequence CbirOr497IC ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229234 1229518 . - . KQ414851.1 exonerate:protein2genome:local exon 1229234 1229518 . - . insertions 6 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229234 1229518 110 - . alignment_id 5 ; Query CbirOr497IC ; Align 1229519 120 27 ; Align 1229489 129 123 ; Align 1229363 170 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr495 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 142 Query range: 57 -> 216 Target range: 1234737 -> 1234059 58 : AsnGlyGlnMetIleAlaGluCysLeuTyrGlnLeuValValThrThrAlaPheLe : 76 ||| !.!. :!: !||||||||| .!. !:!!!.!.!!.!!.!! !:! AsnMetAspAlaValIleGluCysLeuProAsnGlyIleAlaAlaAlaThrSerVa 1234737 : AATATGGACGCAGTGATCGAGTGTTTGCCGAATGGTATCGCAGCCGCGACCAGCGT : 1234683 77 : uValLysLeuLeuAsnGlnIleTrpAsnArgAspLysPheArgArgLeuTyrMetI : 95 !||||||||||||||| !! ||||||!!:!!. ! ||| !!:!.!.| lValLysLeuLeuAsnValTyrLeuAsnArgGluAsnVal---ArgAlaPhePheI 1234682 : GGTGAAATTGTTGAACGTTTACTTAAACAGGGAAAATGTA---CGTGCCTTCTTTA : 1234629 96 : leMetGluAsnHisTrpAsnIlePheThrAsnAspLeuGluAlaArgIleLeuLys : 113 ||!!:|||||| ! !!:! !.!..!.! ! !! !|||:!!:!! leIleGluAsnMetValPheSerTyrLeuGlnGlnSer***LysArgValIleLeu 1234628 : TTATAGAAAACATGGTTTTCTCTTATTTACAACAATCGTAAAAACGTGTCATATTa : 1234575 114 : AsnTyrSerAsn{Il} >>>> Target Intron 1 >>>> {e}AlaHisLy : 121 :::......{||} 201 bp {|}:!!|||:! ***PheGlnLys{Il}++ --{e}SerHisGl 1234574 : tagtttcaaaaa{at}gt.........................tt{A}TCACACGA : 1234350 122 : sPheThrIleLeu<->TyrSerValThrLeuTyrSerMetValThrMetPheIleI : 139 ! :!!|||:!! !:!|||! !|||||| |||.!.:!!..!:!:|||:!:: uGlySerIleValPhePheSerAspThrLeuLeuSerPheMetValValPheLeuL 1234349 : AGGATCGATCGTGTTCTTCTCAGATACATTACTGTCCTTCATGGTAGTTTTCCTGC : 1234293 140 : leIleProSerValGlyProMetPheLeuAspValValLeuProLeuAsnGluSer : 157 !::!!|||! !||| !||| ||||||||||||||||||||||||||||||!!! euValProLeuValPhePro---PheLeuAspValValLeuProLeuAsnGluThr 1234292 : TGGTCCCATTAGTTTTTCCA---TTCTTGGATGTCGTCCTTCCGTTAAATGAAACT : 1234242 158 : ArgSerArgAsnPheAlaValTyrAlaGluTyr<->GlyIleAspGlnAsnArgTy : 175 ||| !!|||.!. !.! !! !.!.!.||| !.!!|||:!! !|| ArgProArgGlnGlnGlyPheArgValAsnTyrLeuTyrPheAspGluAlaAspTy 1234241 : CGACCACGACAGCAAGGATTCAGAGTTAACTATCTATATTTCGACGAAGCGGACTA : 1234185 176 : rPheValSerIleLeuLeuTyrThrSerValMetIleValValGlyValSerIleM : 194 |||| !!|||:!:! !!!! ! !:!! ! !||||||! !|||! !|||! rPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaValValValValMetIleI 1234184 : TTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCA : 1234128 195 : etValAlaValAspThrMetHisValAlaCysThrAlaHisAlaCysSerLeuPhe : 212 !::!!.!!||||||:!!:!!:!!:!! ! ! ! !|||||| !!.!!:!!||| leIleThrValAspSerLeuTyrMetIleIleIleHisHisAlaSerGlyMetPhe 1234127 : TAATCACCGTAGACTCGTTGTACATGATAATAATTCACCATGCCAGCGGAATGTTC : 1234074 213 : GlnLeuIleGly : 216 :!! !||| AlaValCysGly 1234073 : GCCGTGTGCGGG : 1234060 vulgar: CbirOr495 57 216 . KQ414851.1 1234737 1234059 - 142 M 32 96 G 1 0 M 27 81 S 0 2 5 0 2 I 0 197 3 0 2 S 1 1 M 7 21 G 0 3 M 20 60 G 1 0 M 22 66 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234737 142 - . gene_id 1 ; sequence CbirOr495 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1234559 1234737 . - . KQ414851.1 exonerate:protein2genome:local exon 1234559 1234737 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local splice5 1234557 1234558 . - . intron_id 1 ; splice_site "gt" KQ414851.1 exonerate:protein2genome:local intron 1234358 1234558 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1234358 1234359 . - . intron_id 0 ; splice_site "TT" KQ414851.1 exonerate:protein2genome:local cds 1234060 1234357 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234357 . - . insertions 6 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234737 142 - . alignment_id 1 ; Query CbirOr495 ; Align 1234738 58 96 ; Align 1234642 91 81 ; Align 1234357 119 21 ; Align 1234333 126 60 ; Align 1234273 147 66 ; Align 1234204 169 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr495 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 141 Query range: 123 -> 216 Target range: 1243875 -> 1243599 124 : IleLeuTyrSerValThrLeuTyrSerMetValThrMetPheIleIleIleProSe : 142 :!!! ! !|||! !||||||!:!! !.!. !! !!!:|||:!!:!!.!!|||! ValSerLeuSerGlyThrLeuPheTyrPheSerIleIlePheValLeuPheProLe 1243875 : GTCTCTCTTTCAGGTACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATT : 1243821 143 : rValGlyProMetPheLeuAspValValLeuProLeuAsnGluSerArgSerArgA : 161 !:!! !|||!!: ||||||||||||! !||||||||||||!!!|||||||||! uIleProProIle---LeuAspValValSerProLeuAsnGluThrArgSerArgI 1243820 : AATTCCGCCAATA---TTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGA : 1243767 162 : snPheAlaValTyrAlaGluTyrGlyIleAspGlnAsnArgTyrPheValSerIle : 179 ...::: :::||| !.!!|||......::: ||| |||::: leGluValIleLysLeuGlnTyrLeuPheAspMetGluLysAsnPheTyrSerLeu 1243766 : TAGaagtaataaaattgcaataccTGTTCGACAtggagaagaatttttattcatta : 1243713 180 : LeuLeuTyrThrSerValMetIleValValGlyValSerIleMetValAlaValAs : 198 :!!||||||.!! ! !!:!! !:!!! !:!!!!::!!.!!:!!|| TyrValTyrThrGlyTrpCysSerPheMetThrMetMetValIleIleThrIleAs 1243712 : tacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGA : 1243656 199 : pThrMetHisValAlaCysThrAlaHisAlaCysSerLeuPheGlnLeuIleGly : 216 |.!!:!::!!|||!.! !! ! !|||.!!|||.!!|||||| :!! !||| pAlaLeuTyrValValIleIleHisHisThrCysGlyLeuPheAlaValCysGly 1243655 : CGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: CbirOr495 123 216 . KQ414851.1 1243875 1243599 - 141 M 23 69 G 1 0 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243875 141 - . gene_id 2 ; sequence CbirOr495 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243875 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243875 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243875 141 - . alignment_id 2 ; Query CbirOr495 ; Align 1243876 124 69 ; Align 1243807 148 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr495 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 123 -> 216 Target range: 1224303 -> 1224024 124 : IleLeuTyrSerValThrLeuTyrSerMetValThrMetPheIleIleIleProSe : 142 :::::::::||| :!!|||!::! !:!::!! !:!:!:!!!:! !.!!|||! LeuIlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLe 1224303 : ttaattttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATT : 1224249 143 : rValGlyProMetPheLeuAspValValLeuProLeuAsnGluSerArgSerArgA : 161 !:!!..!|||:!: |||||||||||| !||||||||||||!!!||| !!|||! uIleAsnProVal---LeuAspValValAlaProLeuAsnGluThrArgProArgA 1224248 : GATAAATCCGGTT---TTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTA : 1224195 162 : snPheAlaValTyrAlaGluTyr<->GlyIleAspGlnAsnArgTyrPheValSer : 178 ...!! !:!! !.!...||| !||||||:!! !!..!:!!||| !||| rgLeuLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSer 1224194 : GGCTTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGC : 1224141 179 : IleLeuLeuTyrThrSerValMetIleValValGlyValSerIleMetValAlaVa : 197 :!: !!!!:!! !! !..!! :!::!! ! !!! !! !!!:!!::!!||||| ValAsnPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaVa 1224140 : GTGAATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGT : 1224084 198 : lAspThrMetHisValAlaCysThrAlaHisAlaCysSerLeuPheGlnLeuIleG : 216 ||||! !:!::!!:!!.!! !! ! !||| !|||.!!|||||| !:!! !| lAspMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaValCysG 1224083 : GGATATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTGTGTG : 1224027 217 : ly : 216 || ly 1224026 : GG : 1224025 vulgar: CbirOr495 123 216 . KQ414851.1 1224303 1224024 - 115 M 23 69 G 1 0 M 21 63 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224303 115 - . gene_id 3 ; sequence CbirOr495 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224303 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224303 . - . insertions 3 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224303 115 - . alignment_id 3 ; Query CbirOr495 ; Align 1224304 124 69 ; Align 1224235 148 63 ; Align 1224169 169 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr495 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 49 -> 216 Target range: 1229926 -> 1229224 50 : LeuThrLeuTyrIleHisArgHisAsnGlyGlnMetIleAlaGluCysLeuTyrGl : 68 :!! !:!! ! :!:!.!!:! ! ||| !.!. !!: !||| !!!!! .! MetTyrValGlnLeuArgLysLysAsnMetAspAspMetMetGluSerPheAlaAs 1229926 : ATGTATGTGCAATTGCGTAAGAAGAATATGGACGATATGATGGAGAGTTTTGCGAA : 1229872 69 : nLeuValValThrThrAlaPheLeuValLysLeuLeuAsnGlnIleTrpAsnArgA : 87 . !:!!!.!.!!.!!.!! !|||||||||||||||||| !! ||||||! nThrIleAlaAlaAlaThrSerLeuValLysLeuLeuAsnValTyrLeuAsnArgG 1229871 : TACTATTGCTGCCGCGACCAGCCTGGTGAAATTGTTGAACGTTTACTTAAACAGGG : 1229815 88 : spLysPheArgArgLeuTyrMetIleMetGluAsnHisTrpAsnIlePheThrAsn : 105 !:!!. ! ||| !!:!.!.|||!!:|||||| ! !!:! !.!. luAsnVal---ArgAlaPhePheIleIleGluAsnMetValPheSerTyrLeuGln 1229814 : AAAATGTA---CGTGCCTTCTTTATTATAGAAAACATGGTTTTCTCTTATTTACAA : 1229764 106 : AspLeuGluAlaArgIleLeuLysAsnTyrSerAsnIleAlaHisLysPheThrIl : 124 .!.! ! !! !|||:!!:!! ! ::: ...::: ::: ! ||||| GlnSer***LysArgValIleLeu***PheArgLysMetTyrAsnLeuValThrIl 1229763 : CAATCGTAAAAACGTGTCATATTATagtttagaaaaatgtataatctCGTGACAAT : 1229707 125 : eLeuTyrSerVal >>>> Target Intron 1 >>>> ThrLeuTyrSerMe : 133 | !!::..! ! 204 bp .!!||| !! ! eGluTrpGluGln-+ +-AlaLeuLeuPheAl 1229706 : AGAGTGGGAGCAGtt.........................atGCTTTACTCTTCGC : 1229476 134 : tValThrMetPheIleIleIleProSerValGlyProMetPheLeuAspValValL : 152 :!! !:!:|||:!::!::!!|||! ! !!|||||| ||||||:!!|||| aMetCysValPheLeuLeuValProLeuPheGlyProAla---LeuAspIleValL 1229475 : AATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCC---CTGGACATCGTCC : 1229422 153 : euProLeuAsnGluSerArgSerArgAsnPheAlaValTyrAlaGluTyrGlyIle : 170 |||||! !||||||!!!||| !!|||.!. ! !! !.!.!.||| !||| euProSerAsnGluThrArgProArgGlnGlnLeuPheArgValAsnTyrIleIle 1229421 : TTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAATT : 1229368 171 : <->AspGlnAsnArgTyrPheValSerIleLeuLeuTyrThrSerValMetIleVa : 188 |||||| !|||||| !!! !:!:! !:!! ! !! ! ! ! !:! PheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPheTrpCysThrIl 1229367 : TTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACAAT : 1229311 189 : lValGlyValSerIleMetValAlaValAspThrMetHisValAlaCysThrAlaH : 207 !||| !|||! ! !!!::!!.!!||||||:!!:!!:!!:!! ! ! ! !| eValLeuValMetAlaIleIleThrValAspSerLeuTyrMetIleIleIleTyrH 1229310 : CGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGATCATAATTTACC : 1229254 208 : isAlaCysSerLeuPheGlnLeuIleGly : 216 ||||| !!.!!:!!||| :!! !||| isAlaSerGlyMetPheAlaIleCysGly 1229253 : ATGCCAGCGGAATGTTCGCTATATGCGGG : 1229225 vulgar: CbirOr495 49 216 . KQ414851.1 1229926 1229224 - 113 M 40 120 G 1 0 M 38 114 5 0 2 I 0 200 3 0 2 M 18 54 G 1 0 M 23 69 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229926 113 - . gene_id 4 ; sequence CbirOr495 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1229693 1229926 . - . KQ414851.1 exonerate:protein2genome:local exon 1229693 1229926 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local splice5 1229691 1229692 . - . intron_id 1 ; splice_site "TT" KQ414851.1 exonerate:protein2genome:local intron 1229489 1229692 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1229489 1229490 . - . intron_id 0 ; splice_site "AT" KQ414851.1 exonerate:protein2genome:local cds 1229225 1229488 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229488 . - . insertions 3 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229926 113 - . alignment_id 4 ; Query CbirOr495 ; Align 1229927 50 120 ; Align 1229807 91 114 ; Align 1229489 129 54 ; Align 1229435 148 69 ; Align 1229363 171 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr496PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 150 Query range: 117 -> 212 Target range: 1243893 -> 1243608 118 : LeuSerArgLysPheThrIleTyrPheSerIleLeuValTyrIleMetThrSerAl : 136 ||| ... :!!! !.!!||| ! !:!!!:! !.!.:!!! ! LeuProSerThrIleLeuValSerLeuSerGlyThrLeuPheTyrPheSerIleIl 1243893 : cttccatcgactatactcGTCTCTCTTTCAGGTACTTTGTTCTATTTCTCGATAAT : 1243839 137 : aPheIleIleValProLeuThrProIlePheLeuAspPheMetLeuProLeuAsnG : 155 !|||:!!:!! !!||||||! !||| !.!.|||||| !!:!:! !|||||||||| ePheValLeuPheProLeuIleProProIleLeuAspValValSerProLeuAsnG 1243838 : ATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATG : 1243782 156 : luSerArgProArgPhePheAlaIleGluIleGluPheArgLeuAspLysAsnGlu : 173 ||!!!||| !!|||.!. ...|||:::::::::::: !!!!|||! ...::: luThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspMetGluLys 1243781 : AGACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACAtggagaag : 1243728 174 : TyrPheLeuProLeuTyrPheTyrThrThrThrAlaIleValValGlyIleThrIl : 192 ||| |||||| !!|||||| ! !..! !!:!! !!!:! !:! AsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMetVa 1243727 : aatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGT : 1243671 193 : eValValAlaValAspAlaMetHisIleThrCysThrThrHisAlaCysSerLeuP : 211 !:!!:!!.!!:!!||||||:!::!!:!:..! !! ! !|||.!!|||.!!|||| lIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGlyLeuP 1243670 : TATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTTAT : 1243614 212 : heAla : 212 ||||| heAla 1243613 : TCGCT : 1243609 vulgar: CbirOr496PSE 117 212 . KQ414851.1 1243893 1243608 - 150 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243609 1243893 150 - . gene_id 1 ; sequence CbirOr496PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243609 1243893 . - . KQ414851.1 exonerate:protein2genome:local exon 1243609 1243893 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243609 1243893 150 - . alignment_id 1 ; Query CbirOr496PSE ; Align 1243894 118 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr496PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 144 Query range: 123 -> 212 Target range: 1234338 -> 1234068 124 : IleTyrPheSerIleLeuValTyrIleMetThrSerAlaPheIleIleValProLe : 142 :!:!:!|||||| ! !:!! !.!.! ! !!.!|||:!::!:|||||||| ValPhePheSerAspThrLeuLeuSerPheMetValValPheLeuLeuValProLe 1234338 : GTGTTCTTCTCAGATACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATT : 1234284 143 : uThrProIlePheLeuAspPheMetLeuProLeuAsnGluSerArgProArgPheP : 161 |..! ! !||||||||| !!:!:|||||||||||||||!!!||||||||| uValPheProPheLeuAspValValLeuProLeuAsnGluThrArgProArgGlnG 1234283 : AGTTTTTCCATTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGC : 1234227 162 : heAlaIleGluIleGluPhe<->ArgLeuAspLysAsnGluTyrPheLeuProLeu : 178 !.!.!!..!:!!.!.!:! !!!!|||:!! !!:||||||!!! !:!! lnGlyPheArgValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSerVal 1234226 : AAGGATTCAGAGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTG : 1234173 179 : TyrPheTyrThrThrThrAlaIleValValGlyIleThrIleValValAlaValAs : 197 |||||| ! !.!! !!.! !||||||! !:!!! !|||:!!:!!.!!||||| TyrPheGlnLeuAlaTrpGlyAlaValValValValMetIleIleIleThrValAs 1234172 : TACTTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGA : 1234116 198 : pAlaMetHisIleThrCysThrThrHisAlaCysSerLeuPheAla : 212 |:!!:!!:!!!!:! ! ! ! !|||||| !!.!!:!!|||||| pSerLeuTyrMetIleIleIleHisHisAlaSerGlyMetPheAla 1234115 : CTCGTTGTACATGATAATAATTCACCATGCCAGCGGAATGTTCGCC : 1234069 vulgar: CbirOr496PSE 123 212 . KQ414851.1 1234338 1234068 - 144 M 44 132 G 0 3 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234069 1234338 144 - . gene_id 2 ; sequence CbirOr496PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234069 1234338 . - . KQ414851.1 exonerate:protein2genome:local exon 1234069 1234338 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234069 1234338 144 - . alignment_id 2 ; Query CbirOr496PSE ; Align 1234339 124 132 ; Align 1234204 168 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr496PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 123 -> 212 Target range: 1224303 -> 1224033 124 : IleTyrPheSerIleLeuValTyrIleMetThrSerAlaPheIleIleValProLe : 142 ::: |||||| !:!!!::|||:!: !! !!.!!:!!!:! ! !!||||| LeuIlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLe 1224303 : ttaattttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATT : 1224249 143 : uThrProIlePheLeuAspPheMetLeuProLeuAsnGluSerArgProArgPheP : 161 |! ! ! !!|||||| !!:!: !||||||||||||!!!||||||||| . uIleAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgL 1224248 : GATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGC : 1224192 162 : heAlaIleGluIleGluPhe<->ArgLeuAspLysAsnGluTyrPheLeuProLeu : 178 !! !:!! !:!!...!:! !:!!|||:!! !!|||:!!|||! ! !:!! euLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerVal 1224191 : TTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTG : 1224138 179 : TyrPheTyrThrThrThrAlaIleValValGlyIleThrIleValValAlaValAs : 197 !!|||:!! ! !|||::!:!::!! ! !! ! !!!::!!:!!|||||||| AsnPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAs 1224137 : AATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGA : 1224081 198 : pAlaMetHisIleThrCysThrThrHisAlaCysSerLeuPheAla : 212 | !:!::!!|||||| !! ! !||| !|||.!!||||||||| pMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAla 1224080 : TATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCA : 1224034 vulgar: CbirOr496PSE 123 212 . KQ414851.1 1224303 1224033 - 130 M 44 132 G 0 3 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224034 1224303 130 - . gene_id 3 ; sequence CbirOr496PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224034 1224303 . - . KQ414851.1 exonerate:protein2genome:local exon 1224034 1224303 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224034 1224303 130 - . alignment_id 3 ; Query CbirOr496PSE ; Align 1224304 124 132 ; Align 1224169 168 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr496PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 121 -> 212 Target range: 1240106 -> 1239830 122 : PheThrIleTyrPheSerIleLeuValTyrIleMetThrSerAlaPheIleIleVa : 140 !:!! ! !|||.!!|||:!!:!!:!!!:! ::: |||::::!:|| TyrIleTyrTyrIleSerValValLeuPheSerValLeuPheIlePheLeuValVa 1240106 : TACATATATTACATTTCAGTCGTTTTATTTTCcgttttgttcatttttctggTGGT : 1240052 141 : lProLeuThrProIlePheLeuAspPheMetLeuProLeuAsnGluSerArgProA : 159 ||||::: ||| ...||||||.!!:!: !||||||||||||!!!||| !!| lProIlePheProProLeuLeuAspIleLeuLysProLeuAsnGluThrArgAlaA 1240051 : TCcgatttttcctcctcttctggACATTTTAAAACCTTTAAACGAAACCCGAGCAC : 1239995 160 : rgPhePheAlaIleGluIleGluPheArg<->LeuAspLysAsnGluTyrPheLeu : 176 || ...::::::...!:!! ! :!!|||!:!:!!||| ! !||| rgGlnLysIlePheLysValAsnTyrLeuIleIleAspArgAspGluGlnAlaLeu 1239994 : gccagaaaatattcaaagttaaTTACCTGATCATTGACAGGGATGAACAAGCTCTG : 1239941 177 : ProLeuTyrPheTyrThrThrThrAlaIleValValGlyIleThrIleValValAl : 195 ! !||||||:!! !:!! !.!!! !:!!..! ! ! ! !|||:!!:: IleThrTyrPheHisLeuSerTrpThrThrIleThrLeuGlyIleSerValLeuSe 1239940 : ATCACATATTTTCACTTGTCTTGGACAACTATCACTCTTGGGATATCTGTGCTTAG : 1239884 196 : aValAspAlaMetHisIleThrCysThrThrHisAlaCysSerLeuPheAla : 212 ! !!!: !!!::!!:!! ! !! ! !|||.!! !!.!!||||||||| rSerGluLeuIleTyrValLeuLeuIleHisHisThrSerGlyLeuPheAla 1239883 : CTCAGAATTGATATACGTCCTTCTTATTCATCATACCAGCGGTCTGTTTGCT : 1239831 vulgar: CbirOr496PSE 121 212 . KQ414851.1 1240106 1239830 - 107 M 47 141 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239831 1240106 107 - . gene_id 4 ; sequence CbirOr496PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239831 1240106 . - . KQ414851.1 exonerate:protein2genome:local exon 1239831 1240106 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239831 1240106 107 - . alignment_id 4 ; Query CbirOr496PSE ; Align 1240107 122 141 ; Align 1239963 169 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr496PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 135 -> 212 Target range: 1229467 -> 1229233 136 : AlaPheIleIleValProLeuThrProIlePheLeuAspPheMetLeuProLeuAs : 154 !.!|||:!::!:||||||||| ! ! ! !||||||.!!:!:||||||! !|| ValPheLeuLeuValProLeuPheGlyProAlaLeuAspIleValLeuProSerAs 1229467 : GTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCGTCCTTCCATCAAA : 1229413 155 : nGluSerArgProArgPhePheAlaIleGluIleGluPheArgLeu<->AspLysA : 172 ||||!!!||||||||| !.!!..!:!!.!.!:!! !:!! |||:!! nGluThrArgProArgGlnGlnLeuPheArgValAsnTyrIleIlePheAspGlnA 1229412 : TGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAATTTTCGACCAAG : 1229356 173 : snGluTyrPheLeuProLeuTyrPheTyrThrThrThrAlaIleValValGlyIle : 190 !!:||||||!!! !:!!|||.!! ! ! ! !..!! !:!!||| !:!! laAspTyrPhePheTyrValTyrIleGlnLeuPheTrpCysThrIleValLeuVal 1229355 : CAGACTATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACAATCGTTCTTGTA : 1229302 191 : ThrIleValValAlaValAspAlaMetHisIleThrCysThrThrHisAlaCysSe : 209 ! ! !:!!:!!.!!||||||:!!:!!:!!!!:! ! ! ! !|||||| !!.! MetAlaIleIleThrValAspSerLeuTyrMetIleIleIleTyrHisAlaSerGl 1229301 : ATGGCCATTATCACCGTAGATTCATTGTACATGATCATAATTTACCATGCCAGCGG : 1229245 210 : rLeuPheAla : 212 !:!!|||||| yMetPheAla 1229244 : AATGTTCGCT : 1229234 vulgar: CbirOr496PSE 135 212 . KQ414851.1 1229467 1229233 - 107 M 34 102 G 0 3 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229234 1229467 107 - . gene_id 5 ; sequence CbirOr496PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229234 1229467 . - . KQ414851.1 exonerate:protein2genome:local exon 1229234 1229467 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229234 1229467 107 - . alignment_id 5 ; Query CbirOr496PSE ; Align 1229468 136 102 ; Align 1229363 170 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr481 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 122 -> 222 Target range: 1611 -> 1908 123 : ThrLysValLeuThrIlePheSerIlePheGlyValPheGlyLeuIleSerValProIleLe : 143 ..!||| !! !! !:!: !:!!||| !! !!|||.!! !!!!:!:|||..!|||:!: ValLysTyrSerIleValAsnAlaIleValCysValIleLeuPheValSerThrProValTh 1612 : GTCAAATATTCGATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGAC : 1672 144 : uProHisIleIleAspValSerTrpProAlaAsnLysSerArgArgCysSerSerSerGlnI : 164 !|||||||||:!:|||:!!! ! ||| !|||:!!|||||| ! :!!! !! ! rProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIle---T 1673 : ACCGCATATTTTGGACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATT---T : 1732 165 : leLeuThrGluTyrPheIleAspGlnGluLysTyrPheTyrLeuIleLeuValHisMetTyr : 184 !! !.!! ! ||||||! !|||:!!.!.|||||| ! ! !|||:!!..!|||||| yrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAla 1733 : ACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCG : 1792 185 : AlaAlaLeuTyrValGlyAlaAlaAlaMetValSerThrGlyAlaMetSerValValTyrPh : 205 :!!!.!:!! |||! ! ! !!.! !!:!! !! !.!!! ! !:!! ! ! ! SerValIleLeuValValPheTyrValTyrPheAlaCysAspThrSerTyrIleTyrValVa 1793 : TCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGT : 1855 206 : eGlnHisValCysGlyMetPheLysValAlaSerTyrArgIleLysGlnSer : 222 ||||||! !||||||:!!!!. |||:!!.!. :::|||:::...::: lGlnHisGlyCysGlyLeuLeuAlaValSerGly***LysIleArgSerAsn 1856 : GCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaattcgatcgaac : 1908 vulgar: CbirOr481 122 222 . KQ414921.1 1611 1908 + 109 M 40 120 G 1 0 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1612 1908 109 + . gene_id 1 ; sequence CbirOr481 ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1612 1908 . + . KQ414921.1 exonerate:protein2genome:local exon 1612 1908 . + . insertions 0 ; deletions 1 KQ414921.1 exonerate:protein2genome:local similarity 1612 1908 109 + . alignment_id 1 ; Query CbirOr481 ; Align 1612 123 120 ; Align 1732 164 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr477 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 149 -> 221 Target range: 1671 -> 1887 150 : ValProSerIleLeuAspIleIleIleProLeuAsnGluSerArgProSerTrpLeuProIl : 170 ..!||| !||||||||||||:!!:!!||| !|||||||||||| ! ! !! ! ! ThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTy 1672 : ACACCGCATATTTTGGACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTA : 1732 171 : eValAlaGluTyrPheValAspGlnGluArgTyrPheTyrValIleValIleHisIlePheI : 191 ! !||| ! ||||||..!|||:!!.!.!:!||| ! !|||:!!! |||!!: rProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaS 1733 : CCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGT : 1795 192 : leValLeuTyrAlaGlyCysMetValLeuValAlaSerGlyGlyMetIleLeuGlyTyrVal : 211 !|||:!! !.!! !! ! |||! ! !!|||!!!! ! !! !:!! ! !||| erValIleLeuValValPheTyrValTyrPheAlaCysAspThrSerTyrIleTyrValVal 1796 : CCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTG : 1855 212 : MetHisAsnCysAlaIlePheLysIleAla : 221 ...|||..!|||!.!:!:!!. :!::!! GlnHisGlyCysGlyLeuLeuAlaValSer 1856 : CAACACGGCTGCGGATTGTTGGCCGTGTCC : 1887 vulgar: CbirOr477 149 221 . KQ414921.1 1671 1887 + 101 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1672 1887 101 + . gene_id 1 ; sequence CbirOr477 ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1672 1887 . + . KQ414921.1 exonerate:protein2genome:local exon 1672 1887 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1672 1887 101 + . alignment_id 1 ; Query CbirOr477 ; Align 1672 150 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr497IC Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 136 -> 212 Target range: 1653 -> 1881 137 : PheIleIleValProLeuLysProIlePheLeuAspIleIleLeuProLeuAsnGluSerAr : 157 |||:!: ..!|||:!!! !||| !.!!|||||||||:!!|||||| !||||||||||| PheValSerThrProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerAr 1654 : TTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAAAACGAGTCACG : 1714 158 : gProArgPhePheAlaIleGluLeuGluCysArgLeuAspLysAsnGluHisPheLeuLeuL : 178 | ! ! !:! ! ! ! ! ! ! ! ! !|||:!!:!!:!!:!! !:!!! !: gAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrI 1715 : AGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACA : 1777 179 : euTyrPheTyrThrThrThrIleIleValValGlyIleThrIleIleValAlaIleAspThr : 198 !! ! :!!! !.!!:!!:!:|||:!!|||! !.!! !:!: ! !!||| !|||||| leIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrPheAlaCysAspThr 1778 : TAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGACACC : 1837 199 : ValTyrValIleSerThrThrHisAlaCysSerLeuPheAla : 212 !|||:!! ! !..! !|||!.!|||.!!|||!!.||| SerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAla 1838 : AGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCC : 1881 vulgar: CbirOr497IC 136 212 . KQ414921.1 1653 1881 + 108 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1654 1881 108 + . gene_id 1 ; sequence CbirOr497IC ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1654 1881 . + . KQ414921.1 exonerate:protein2genome:local exon 1654 1881 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1654 1881 108 + . alignment_id 1 ; Query CbirOr497IC ; Align 1654 137 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr495 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 108 -> 221 Target range: 1566 -> 1905 109 : AlaArgIleLeuLysAsnTyrSerAsnIleAlaHisLysPheThrIleLeuTyrSerValTh : 129 !.!||| !! ! !||| !!..!!.!:!! ! !! !!:!! !:!! !||||||:!!.. GlyArgSerTyrLeuAsnAspGlnThrValTyrPheThrTyrIleValLysTyrSerIleVa 1567 : GGCAGATCTTATTTAAACGACCAAACTGTTTATTTTACGTACATTGTCAAATATTCGATAGT : 1627 130 : rLeuTyrSerMetValThrMetPheIleIleIleProSerValGlyProMetPheLeuAspV : 150 ! ! ! !:!: !..!!!:.!..!!:!: !! !!||| !||| .!!||||||: lAsnAlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspI 1628 : GAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACA : 1690 151 : alValLeuProLeuAsnGluSerArgSerArgAsnPheAlaValTyrAlaGluTyrGlyIle : 170 !!:!!|||||| !||||||||||||..! ! !:! ! ! ||| ! ||| !! ! leLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThr 1691 : TTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACC : 1750 171 : AspGlnAsnArgTyrPheValSerIleLeuLeuTyrThrSerValMetIleValValGlyVa : 191 |||:!!:!!!:!||| !|||! !|||:!! !:!!! !:!! !:!!|||:!!|||! ! ! AspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPh 1751 : GACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTT : 1813 192 : lSerIleMetValAlaValAspThrMetHisValAlaCysThrAlaHisAlaCysSerLeuP : 212 !! !:!: !!||| !||||||! :!!:!! ! !..! !|||!.!|||.!!|||! eTyrValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuL 1814 : TTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGT : 1876 213 : heGlnLeuIleGlyArgGlnIleGluAsn : 221 !. :!! !||| :::|||...::: euAlaValSerGly***LysIleArgSer 1877 : TGGCCGTGTCCGGgtaaaaaattcgatcg : 1905 vulgar: CbirOr495 108 221 . KQ414921.1 1566 1905 + 128 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1567 1905 128 + . gene_id 1 ; sequence CbirOr495 ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1567 1905 . + . KQ414921.1 exonerate:protein2genome:local exon 1567 1905 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1567 1905 128 + . alignment_id 1 ; Query CbirOr495 ; Align 1567 109 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr481 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 115 -> 214 Target range: 32449 -> 32743 116 : TrpAsnIleAlaArgArgTyrThrLysValLeuThrIlePheSerIlePheGlyValPhe : 135 !::!.!! ||| ::: :!! !||| !||| ! !.!!|||:!!||| TyrThrThrLeuArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePhe 32450 : TATACTACtctccgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTT : 32507 136 : GlyLeuIleSerValProIleLeuProHisIleIleAspValSerTrpProAlaAsnLys : 155 ..!! ! !! !|||! !.!!||||||:!!||||||||||||! ! !||| !|||:!! SerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGlu 32508 : TCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAA : 32567 156 : SerArgArgCysSerSerSerGlnIleLeuThrGluTyrPheIleAspGlnGluLysTyr : 175 ||||||!.! ! ! !! ! ! ! !|||||||||:!!||||||:::|||||| SerArgHis---HisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyr 32568 : TCCCGACAC---CATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatat : 32624 176 : PheTyrLeuIleLeuValHisMetTyrAlaAlaLeuTyrValGlyAlaAlaAlaMetVal : 195 ||| !||| !:!!|||||| !!.!.!!:!! !:!!||| !.!!!.! ..! PheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThr 32625 : ttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACG : 32684 196 : SerThrGlyAlaMetSerValValTyrPheGlnHisValCysGlyMetPheLysVal : 214 :!!... :::::: ::: :::... |||||||||!.!! |||!!.:!! AlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32685 : GCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr481 115 214 . KQ415081.1 32449 32743 + 140 M 43 129 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32450 32743 140 + . gene_id 1 ; sequence CbirOr481 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32450 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32450 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32450 32743 140 + . alignment_id 1 ; Query CbirOr481 ; Align 32450 116 129 ; Align 32579 160 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr481 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 152 -> 212 Target range: 11316 -> 11496 153 : AlaAsnLysSerArgArgCysSerSerSerGlnIleLeuThrGluTyrPheIleAspGln : 172 :!!...!!...!! !|||..!!:!.!!! ! !:!!|||||||||||||||:!!||| ! SerArgAsnGluThrArgAlaAsnGlyLeuIleValLeuThrGluTyrPheValAspTyr 11317 : TCTCGAAACGAGACCAGAGCTAATGGCTTGATAGTTTTAACCGAATACTTCGTTGATTAC : 11374 173 : GluLysTyrPheTyrLeuIleLeuValHisMetTyrAlaAlaLeuTyrValGlyAlaAla : 192 |||:!!|||.!!|||! !||| !..!|||:!! !!.!!.!:!!!:!:!!||| !||| GluGlnTyrIleTyrProIleThrThrHisValValValGlyIlePheMetGlyPheAla 11375 : GAGCAATACATTTATCCAATTACGACCCACGTGGTTGTAGGAATTTTTATGGGTTTTGCT : 11434 193 : AlaMetValSerThrGlyAlaMetSerValValTyrPheGlnHisValCysGlyMetPhe : 212 !...:!!.!!!:!! ! !:!!!:!:!!:!!!:!.!...!|||||| !!||||||||| IleGlnIleGlySerAspLeuLeuAsnMetIlePheMetMetHisValSerGlyMetPhe 11435 : ATTCAAATTGGCAGCGATCTTTTGAATATGATATTTATGATGCACGTCAGTGGAATGTTC : 11494 vulgar: CbirOr481 152 212 . KQ415081.1 11316 11496 + 120 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 11317 11496 120 + . gene_id 2 ; sequence CbirOr481 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 11317 11496 . + . KQ415081.1 exonerate:protein2genome:local exon 11317 11496 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 11317 11496 120 + . alignment_id 2 ; Query CbirOr481 ; Align 11317 153 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr484PSE(F/S) Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 132 -> 214 Target range: 32500 -> 32743 133 : GlyMetPheSerAsnPheIleIleValTyrSerProTyrIleLeuAspValValMetPro : 152 |||!!:|||||| !! |||:!: !!:! !|||||||||:!!||||||:!! !||| GlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaPro 32501 : GGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCT : 32558 153 : LysAsnGluSerTyrAlaIleHisValMetGluMetValThrLysTyrPheIleValSer : 172 !||||||||| ! !||||||:!! ! !.! !:!!||||||:!!! !... LeuAsnGluSer---ArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGln 32559 : CTAAACGAATCC---CGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcag : 32615 173 : GluLysTyrTyrPheLeuValLeuValHisLeuAsnValAlaCysThrAlaGlyLeuIle : 192 :::||||||:::... !:!! !:!!|||:!! !! !.!! !||| !||||||! GlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThr 32616 : caaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACG : 32675 193 : ValThrValGlyThrGlyThrMetMetLeuSerTyrPheLysHisAlaCysGlyMetPhe : 212 |||.!!..!!.!... ::::::...::: :::... |||!.!|||!.!! ||| ValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPhe 32676 : GTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTC : 32735 213 : GluIle : 214 .!.||| AsnIle 32736 : AATATT : 32743 vulgar: CbirOr484PSE(F/S) 132 214 . KQ415081.1 32500 32743 + 137 M 24 72 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32501 32743 137 + . gene_id 1 ; sequence CbirOr484PSE(F/S) ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32501 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32501 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32501 32743 137 + . alignment_id 1 ; Query CbirOr484PSE(F/S) ; Align 32501 133 72 ; Align 32573 158 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr486 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 335 -> 395 Target range: 26746 -> 27638 336 : TyrAsnIleProTrpTyrGlnAlaProLeuHisIleGlnLysLeuIleLeuIleLeuLeu : 355 ||| !! ! !|||||| !|||||| !!.. !|||||||||:!:|||:!::!!||| TyrTyrGlySerTrpTyrAlaAlaProThrArgAlaGlnLysLeuLeuLeuLeuValLeu 26747 : TATTACGGAAGCTGGTACGCGGCGCCAACGCGGGCACAAAAATTGCTGCTGCTGGTGTTG : 26804 356 : GlnArgAsnCysLysProPheAlaLeuAsnPheHisGlyIlePheValAlaSerLeuGlu : 375 |||!:! ! !|||! !::!|||::: ! ! !||| !!..!|||||||||:!! GlnLysCysMetValProCysSerLeuSerAlaAlaLysIleValThrAlaSerLeuGln 26805 : CAGAAATGCATGGTGCCTTGTAGTTTATCGGCCGCTAAAATTGTCACCGCATCGCTGCAA : 26864 376 : CysPheAlaMet >>>> Target Intron 1 >>>> LeuValSerAlaSerValS : 386 !!:!|||! ! 712 bp :!!|||..!.!!||||||| IleTyrAlaThr++ ++IleValGlnThrSerValS 26865 : ATCTATGCTACGgt.........................agATCGTCCAGACGTCGGTAT : 27609 387 : erTyrPheThrIleMetIleSerLeuGln : 395 ||||||||:!!:!::!! !:!!|||:!! erTyrPheSerValLeuTyrAlaLeuLys 27610 : CTTACTTCTCTGTGCTGTACGCGCTGAAA : 27638 vulgar: CbirOr486 335 395 . KQ415081.1 26746 27638 + 107 M 44 132 5 0 2 I 0 708 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 26747 27638 107 + . gene_id 1 ; sequence CbirOr486 ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 26747 26878 . + . KQ415081.1 exonerate:protein2genome:local exon 26747 26878 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 26879 26880 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 26879 27590 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 27589 27590 . + . intron_id 0 ; splice_site "aG" KQ415081.1 exonerate:protein2genome:local cds 27591 27638 . + . KQ415081.1 exonerate:protein2genome:local exon 27591 27638 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 26747 27638 107 + . alignment_id 1 ; Query CbirOr486 ; Align 26747 336 132 ; Align 27591 380 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr495 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 144 -> 216 Target range: 32533 -> 32749 145 : ProMetPheLeuAspValValLeuProLeuAsnGluSerArgSerArgAsnPheAlaVal : 164 ||| .!!:!!||||||:!! !|||||||||||||||||| !!.! .!. !! ! ProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyr 32534 : CCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTAC : 32591 165 : TyrAlaGluTyrGlyIleAspGlnAsnArgTyrPheValSerIleLeuLeuTyrThrSer : 184 !!.!|||||| !:!!||||||...:::||||||::: !||| !|||:!!! ! ! AlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeu 32592 : GCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTC : 32651 185 : ValMetIleValValGlyValSerIleMetValAlaValAspThrMetHisValAlaCys : 204 ! !! :!!..!:!!|||:!!!!!:!! ..!|||||||||:::::: ::: GlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePhe 32652 : GGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttc : 32711 205 : ThrAlaHisAlaCysSerLeuPheGlnLeuIleGly : 216 ! !|||!.!|||:!! !|||.!.:!!:!!||| MetPheHisValCysAlaLysPheAsnIleLeuGly 32712 : atGTTCCACGTTTGCGCCAAATTCAATATTCTCGGG : 32749 vulgar: CbirOr495 144 216 . KQ415081.1 32533 32749 + 140 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32534 32749 140 + . gene_id 1 ; sequence CbirOr495 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32534 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32534 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32534 32749 140 + . alignment_id 1 ; Query CbirOr495 ; Align 32534 145 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr495 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 129 -> 216 Target range: 22041 -> 22302 130 : LeuTyrSerMetValThrMetPheIleIleIleProSerValGlyProMetPheLeuAsp : 149 !!!|||||| ! !! ! .!!.!!:!!! ! !!!!!:!! !|||!!: ! :!! ! PheTyrSerCysGlyIleGlyLeuPheValThrAlaThrLeuLeuProIleValMetCys 22042 : TTCTATTCGTGTGGCATAGGACTTTTCGTTACAGCGACGCTTCTACCAATCGTAATGTGT : 22099 150 : ValValLeuProLeuAsnGluSerArgSerArgAsnPheAlaValTyrAlaGluTyrGly : 169 !:!!! !|||! !|||||||||!.! !!.!!.!.!! !! !! ! ...|||||| ArgIleGlnProArgAsnGluSerHisValHisThrIleProPheGlnGlyGluTyrPhe 22100 : AGAATACAGCCACGTAACGAATCTCACGTACACACTATTCCGTTTCAaggggaatatttt : 22159 170 : IleAspGlnAsnArgTyrPheValSerIleLeuLeuTyrThrSerValMetIleValVal : 189 ...||||||.!.!:! !!.!.|||! !|||:!!|||:!!! !! !:!!! :!!..!:!! PheAspGlnGluLysAsnMetValPheIleIleLeuHisMetIleLeuThrValThrIle 22160 : ttcgaccAAGAGAAAAATATGGTGTTCATTATACTGCACATGATACTCACAGTTACAATC : 22219 190 : GlyValSerIleMetValAlaValAspThrMetHisValAlaCysThrAlaHisAlaCys : 209 ! !!!!||| ||| !..!|||! !!!: :!!!.!! ||| !||||||||| ThrHisCysIleAlaValMetThrAspMetIleLeuLeuValLeuThrMetHisAlaCys 22220 : ACACATTGCATTGCTGTAATGACTGATATGATTTTGCTAGTTTTAACCATGCATGCCTGT : 22279 210 : SerLeuPheGlnLeuIleGly : 216 :!!|||||| :!!:!!||| AlaLeuPheAlaValValGly 22280 : GCCTTGTTCGCTGTTGTTGGG : 22302 vulgar: CbirOr495 129 216 . KQ415081.1 22041 22302 + 106 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 22042 22302 106 + . gene_id 2 ; sequence CbirOr495 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 22042 22302 . + . KQ415081.1 exonerate:protein2genome:local exon 22042 22302 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 22042 22302 106 + . alignment_id 2 ; Query CbirOr495 ; Align 22042 130 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr485PI Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 122 -> 215 Target range: 32467 -> 32743 123 : PheThrLeuIleValSerValTyrGlyValSerAsnAlaIleThrSerSerValLeuPro : 142 ||| ||||||..!!!!! !!:!! ! !! !... !.!!:!!! !:!!:!!:!!! ! PhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIleValGln 32468 : tttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAA : 32525 143 : ValValProArgIleLeuArgThrPheThrSerIleAsnValSerAspGluHisPheMet : 162 !!:!!||| !|||:!! !..!.!..!! !!:!!|||! !||| ..!||| !:!: PheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSer---ArgHisHisVal 32526 : TTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCC---CGACACCATGTA : 32582 163 : IleHisIleThrArgGluTyrPheValAspGlnGluLysTyrPheTyrTyrIleLeuLeu : 182 :!:! !.!! !!||||||||||||||||||:::||||||||| ||| !||| LeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeu 32583 : CTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTG : 32642 183 : HisLeuGlyAlaSerPheLeuIleGlyThrIleValIleValGlyThrGlySerLeuLeu : 202 |||:!! !!.!!!! !! !:!!||| !! ||| !..!!.!... |||:::... HisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePhe 32643 : CACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttc : 32702 203 : PheGlyCysMetLysTyrMetCysGlyLeuPheArgIle : 215 ... ||| :!!:!:|||!.! !|||!.!||| IlePhePheMetPheHisValCysAlaLysPheAsnIle 32703 : atattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr485PI 122 215 . KQ415081.1 32467 32743 + 106 M 35 105 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32468 32743 106 + . gene_id 1 ; sequence CbirOr485PI ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32468 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32468 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32468 32743 106 + . alignment_id 1 ; Query CbirOr485PI ; Align 32468 123 105 ; Align 32573 159 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr497IC Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 116 -> 211 Target range: 32452 -> 32737 117 : ThrPheSerArgLysPheThrIleTyrPheSerIleLeuLeuTyrIleMetSerSerAla : 136 ||| ||| ||| ::: ! !!!! !!!!:!!|||||| ! !! !:!! ThrThrLeuArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSer 32453 : ACTACtctccgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCC : 32510 137 : PheIleIleValProLeuLysProIlePheLeuAspIleIleLeuProLeuAsnGluSer : 156 !:! !||||||! !!!! !||| !.!!:!!|||:!:||| !||||||||||||||| TyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSer 32511 : TACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCC : 32570 157 : ArgProArgPhePheAlaIleGluLeuGluCysArgLeuAspLysAsnGluHisPheLeu : 176 |||! !!.! ! .!. !! !! !|||! ! !:!!|||:::...::::::|||||| ArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeu 32571 : CGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttccta : 32630 177 : LeuLeuTyrPheTyrThrThrThrIleIleValValGlyIleThrIleIleValAlaIle : 196 !:!! !!.:!!! ! ! !! !:!!..!:!!|||:!:|||:!! !..!|||::: ProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaVal 32631 : ccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtc : 32690 197 : AspThrValTyrValIleSerThrThrHisAlaCysSerLeuPhe : 211 |||::::::::::::... ! !|||!.!|||:!! !||| AspSerIlePheIlePhePheMetPheHisValCysAlaLysPhe 32691 : gattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTC : 32737 vulgar: CbirOr497IC 116 211 . KQ415081.1 32452 32737 + 131 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32453 32737 131 + . gene_id 1 ; sequence CbirOr497IC ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32453 32737 . + . KQ415081.1 exonerate:protein2genome:local exon 32453 32737 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32453 32737 131 + . alignment_id 1 ; Query CbirOr497IC ; Align 32453 117 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr496PSE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 116 -> 211 Target range: 32452 -> 32737 117 : ThrLeuSerArgLysPheThrIleTyrPheSerIleLeuValTyrIleMetThrSerAla : 136 ||| ||| ||| ::: ! !!!! !!!!||||||||| ! !! !:!! ThrThrLeuArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSer 32453 : ACTACtctccgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCC : 32510 137 : PheIleIleValProLeuThrProIlePheLeuAspPheMetLeuProLeuAsnGluSer : 156 !:! !||||||! !!!! !||| !.!!:!!||| ! !!: !||||||||||||||| TyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSer 32511 : TACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCC : 32570 157 : ArgProArgPhePheAlaIleGluIleGluPheArgLeuAspLysAsnGluTyrPheLeu : 176 |||! !!.! ! .!. !! !! !|||!:! !:!!|||:::...:::||||||||| ArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeu 32571 : CGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttccta : 32630 177 : ProLeuTyrPheTyrThrThrThrAlaIleValValGlyIleThrIleValValAlaVal : 196 |||:!! !!.:!!! ! ! !.!!:!!..!:!!|||:!:|||:!!!.!..!|||||| ProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaVal 32631 : ccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtc : 32690 197 : AspAlaMetHisIleThrCysThrThrHisAlaCysSerLeuPhe : 211 |||:::::: ||| ! !|||!.!|||:!! !||| AspSerIlePheIlePhePheMetPheHisValCysAlaLysPhe 32691 : gattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTC : 32737 vulgar: CbirOr496PSE 116 211 . KQ415081.1 32452 32737 + 146 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32453 32737 146 + . gene_id 1 ; sequence CbirOr496PSE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32453 32737 . + . KQ415081.1 exonerate:protein2genome:local exon 32453 32737 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32453 32737 146 + . alignment_id 1 ; Query CbirOr496PSE ; Align 32453 117 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr488 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 331 -> 382 Target range: 38478 -> 38631 332 : AspMetPheThrValAlaTyrAsnIleArgTrpTyrThrAlaProValArgIleGlnArg : 351 |||!!:!!. !||| !!:! !! !||||||||| !||||||:!!!:!||||||!:! AspIleLeuPheValArgPheTyrSerArgTrpTyrAspAlaProLeuLysIleGlnLys 38479 : GATATATTGTTCGTCAGGTTTTATTCACGATGGTACGACGCGCCTCTAAAAATACAGAAA : 38536 352 : LeuIleLeuPheLeuLeuGlnArgSerCysLysIleTyrGlyLeuLysIleGlyGlyLeu : 371 |||:!!|||.!!:!!:!!.!.||||||! !:!! ! ||||||:::||||||! !! ! LeuValLeuIleIleMetAsnArgSerPheGluProValGlyLeuArgIleGlyAspTyr 38537 : CTAGTACTGATCATAATGAACAGAAGCTTCGAACCAGTAGGCCTCCGTATTGGCGATTAC : 38596 372 : PheIleAlaSerLeuGluGlyPheAlaSerLeu : 382 ...::::::|||...|||:::|||:!! GlnAspValThrIleGluAsnPheSerSerVal 38597 : CAGGAcgtaacaattgaaaatttctcatcCGTA : 38631 vulgar: CbirOr488 331 382 . KQ415081.1 38478 38631 + 107 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 38479 38631 107 + . gene_id 1 ; sequence CbirOr488 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 38479 38631 . + . KQ415081.1 exonerate:protein2genome:local exon 38479 38631 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 38479 38631 107 + . alignment_id 1 ; Query CbirOr488 ; Align 38479 332 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr488 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 136 -> 213 Target range: 32515 -> 32743 137 : SerLeuLeuProIleLeuProTrpIleLeuGlyThrPheLeuLeuValAsnGluSerArg : 156 :!!:!!:!!! !.!!||||||!::|||:!!! !..!.!. !! !:!!|||||||||||| AlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArg 32516 : GCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGA : 32573 157 : ProLeuTyrAsnMetGlnIleValThrGluTyrPheValAspLysAspLysThrPheTyr : 176 ! ! :!! :!!! ! !!.! !|||||||||||||||:::...||| ||| His---HisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeu 32574 : CAC---CATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttccta : 32630 177 : LeuIleLeuLeuHisThrTyrValSerValCysIleGlyIleIleAlaMetCysAlaAla : 196 !||| !||||||! ! !! !!!!||| !:!!|||:!:! !.! |||!.. ProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaVal 32631 : ccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtc : 32690 197 : GlyMetMetLeuValAlaTyrLeuLysHisValCysGlyValPheSerIle : 213 :::...::: :::::! |||||||||!.! !|||!:!||| AspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32691 : gattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr488 136 213 . KQ415081.1 32515 32743 + 106 M 21 63 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32516 32743 106 + . gene_id 2 ; sequence CbirOr488 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32516 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32516 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32516 32743 106 + . alignment_id 2 ; Query CbirOr488 ; Align 32516 137 63 ; Align 32579 159 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr483INT Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 61 -> 154 Target range: 32467 -> 32743 62 : PheThrPheIleIleIleLeuPheAlaIleCysGlyValPheThrIleSerPheLeuSer : 81 ||| ...|||! !! ! !|||!.! ! !|||:!!|||:!! !:!!.!.:!!..! PhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIleValGln 32468 : tttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAA : 32525 82 : IleTrpProCysIleLeuGlyValIleLeuProLeuLysAlaSerArgSerArgSerAla : 101 .!! !|||! !|||:!!! !|||||| !||||||!!.! !|||||| !.! !!.! PheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArg---HisHisVal 32526 : TTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGA---CACCATGTA : 32582 102 : MetGlnValValThrGluTyrPheIleAspGlnGluLysTyrPheTyrLeuIleLeuLeu : 121 :!!! ! !!.! !|||||||||:!!||||||:::||||||||| !||| !||| LeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeu 32583 : CTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTG : 32642 122 : HisMetAsnValThrIleTyrIleGlyAlaThrAlaValIleAlaThrGlyThrMetLeu : 141 |||||| !! !|||:!! !:!!||| !|||!.!!.!! |||... ::::::... HisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePhe 32643 : CACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttc : 32702 142 : MetGlyTyrLeuLysHisIleCysGlyMetPheSerIle : 154 ::: :::::! |||:!!|||!.!! |||!:!||| IlePhePheMetPheHisValCysAlaLysPheAsnIle 32703 : atattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr483INT 61 154 . KQ415081.1 32467 32743 + 150 M 36 108 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32468 32743 150 + . gene_id 1 ; sequence CbirOr483INT ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32468 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32468 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32468 32743 150 + . alignment_id 1 ; Query CbirOr483INT ; Align 32468 62 108 ; Align 32576 99 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr483INT Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 50 -> 152 Target range: 11190 -> 11496 51 : IleIleGlnArgTyrGlyAsnAsnAlaLysArgPheThrPheIleIleIleLeuPheAla : 70 :!!:!:|||..! ! ! ! !:!! !!|||! !||| !|||:!!! |||! ! ! :!! LeuLeuGlnGluGlnAspPheHisProLysLeuPheAspPheValThrIleProValSer 11191 : cTATTGCAGGAACAAGACTTTCACCCTAAACTTTTCGATTTTGTCACGATTCCAGTGTCC : 11248 71 : IleCys<->GlyValPheThrIleSerPheLeuSerIleTrpProCysIleLeuGlyVal : 89 !||| !:!!|||:!!||| !|||||| !! !! ! ! !..!..! SerCysLeuLeuLeuPheSerIleValPheLeuHisThrLeuSerGlnThrThrAsnThr 11249 : TCATGTTTGCTATTGTTCTCTATCGTCTTCTTGCATACGCTTTCGCAAACTACCAATACG : 11308 90 : IleLeuProLeuLysAlaSerArgSerArgSerAlaMetGlnValValThrGluTyrPhe : 109 ||| ! !!! !!!.! !!!!|||:!! !:!!.!:!! !|||:!!|||||||||||| IleThrSerArgAsnGluThrArgAla---AsnGlyLeuIleValLeuThrGluTyrPhe 11309 : ATCACATCTCGAAACGAGACCAGAGCT---AATGGCTTGATAGTTTTAACCGAATACTTC : 11365 110 : IleAspGlnGluLysTyrPheTyrLeuIleLeuLeuHisMetAsnValThrIleTyrIle : 129 :!!||| ! |||:!!|||.!!|||! !||| ! !|||:!! !||| !|||!:!!!: ValAspTyrGluGlnTyrIleTyrProIleThrThrHisValValValGlyIlePheMet 11366 : GTTGATTACGAGCAATACATTTATCCAATTACGACCCACGTGGTTGTAGGAATTTTTATG : 11425 130 : GlyAlaThrAlaValIleAlaThrGlyThrMetLeuMetGlyTyrLeuLysHisIleCys : 149 ||| !.!! ! !|||!.!!:!! ! !:!! !||| !!:!:!!! !|||:!! !! GlyPheAlaIleGlnIleGlySerAspLeuLeuAsnMetIlePheMetMetHisValSer 11426 : GGTTTTGCTATTCAAATTGGCAGCGATCTTTTGAATATGATATTTATGATGCACGTCAGT : 11485 150 : GlyMetPhe : 152 ||||||||| GlyMetPhe 11486 : GGAATGTTC : 11496 vulgar: CbirOr483INT 50 152 . KQ415081.1 11190 11496 + 110 M 22 66 G 0 3 M 26 78 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 11191 11496 110 + . gene_id 2 ; sequence CbirOr483INT ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 11191 11496 . + . KQ415081.1 exonerate:protein2genome:local exon 11191 11496 . + . insertions 3 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 11191 11496 110 + . alignment_id 2 ; Query CbirOr483INT ; Align 11191 51 66 ; Align 11260 73 78 ; Align 11338 100 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr483INT Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 63 -> 154 Target range: 22026 -> 22296 64 : PheIleIleIleLeuPheAlaIleCysGlyValPheThrIleSerPheLeuSerIleTrp : 83 |||::::!! ! !||| ! ||||||:!! !.!! ! !!!!:!! PheLeuValAlaAspPheTyrSerCysGlyIleGlyLeuPheValThrAlaThrLeuLeu 22027 : tttctcgTTGCAGACTTCTATTCGTGTGGCATAGGACTTTTCGTTACAGCGACGCTTCTA : 22084 84 : ProCysIleLeuGlyValIleLeuProLeuLysAlaSerArgSerArgSerAlaMetGln : 103 ||| !:!!:!! !! !|||! !|||! !!!.! !|||!.! !!.!!!! !!:! ! ProIleValMetCysArgIleGlnProArgAsnGluSerHisValHisThr---IlePro 22085 : CCAATCGTAATGTGTAGAATACAGCCACGTAACGAATCTCACGTACACACT---ATTCCG : 22141 104 : ValValThrGluTyrPheIleAspGlnGluLysTyrPheTyrLeuIleLeuLeuHisMet : 123 !! |||||||||...|||||||||||| !!.!. !!!|||:!!||||||||| PheGlnGlyGluTyrPhePheAspGlnGluLysAsnMetValPheIleIleLeuHisMet 22142 : TTTCAaggggaatattttttcgaccAAGAGAAAAATATGGTGTTCATTATACTGCACATG : 22201 124 : AsnValThrIleTyrIleGlyAlaThrAlaValIleAlaThrGlyThrMetLeuMetGly : 143 ! :!!|||:!! ||| ! ! ! !!.!:!! !|||! !! !!!:|||:!:! ! IleLeuThrValThrIleThrHisCysIleAlaValMetThrAspMetIleLeuLeuVal 22202 : ATACTCACAGTTACAATCACACATTGCATTGCTGTAATGACTGATATGATTTTGCTAGTT : 22261 144 : TyrLeuLysHisIleCysGlyMetPheSerIle : 154 ! !! !||| !|||!.!:!!|||:!!:!! LeuThrMetHisAlaCysAlaLeuPheAlaVal 22262 : TTAACCATGCATGCCTGTGCCTTGTTCGCTGTT : 22296 vulgar: CbirOr483INT 63 154 . KQ415081.1 22026 22296 + 104 M 37 111 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 22027 22296 104 + . gene_id 3 ; sequence CbirOr483INT ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 22027 22296 . + . KQ415081.1 exonerate:protein2genome:local exon 22027 22296 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 22027 22296 104 + . alignment_id 3 ; Query CbirOr483INT ; Align 22027 64 111 ; Align 22138 102 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr477 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 149 -> 220 Target range: 32530 -> 32743 150 : ValProSerIleLeuAspIleIleIleProLeuAsnGluSerArgProSerTrpLeuPro : 169 :!!|||! !|||:!!|||:!:||| ||||||||||||||||||! ! ! |||||| LeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHisValLeuPro 32531 : CTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCG : 32588 170 : IleValAlaGluTyrPheValAspGlnGluArgTyrPheTyrValIleValIleHisIle : 189 !!.!!.!||||||||||||||||||::::::|||||| !|||!.!:!:|||!!: TyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMet 32589 : TACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATG : 32648 190 : PheIleValLeuTyrAlaGlyCysMetValLeuValAlaSerGlyGlyMetIleLeuGly : 209 .!! ..!:!! ! !||| ! !||| !..!||| ...:::...::: LeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhe 32649 : CTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattc : 32708 210 : TyrValMetHisAsnCysAlaIlePheLysIle : 220 :::::!.!.||| !||||||! !|||!!.||| PheMetPheHisValCysAlaLysPheAsnIle 32709 : ttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr477 149 220 . KQ415081.1 32530 32743 + 152 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32531 32743 152 + . gene_id 1 ; sequence CbirOr477 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32531 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32531 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32531 32743 152 + . alignment_id 1 ; Query CbirOr477 ; Align 32531 150 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr477 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 145 -> 262 Target range: 4004 -> 4450 146 : ValLeuCysSerValProSerIleLeuAspIleIleIleProLeuAsnGluSerArgProSe : 166 :!!||| !||| ! !! !:!!! !.!.! !:!!:!!||||||!.!!!: !!.! !!!: LeuLeuThrSerSerIleLeuLeuSerGlnThrLeuValProLeuThrAspValAsnAlaAs 4005 : TTACTGACCTCTTCTATCTTACTCTCGCAAACTCTTGTACCTCTAACCGATGTCAATGCTAA : 4065 167 : rTrpLeuProIleValAlaGluTyrPheValAspGlnGluArgTyrPheTyrValIleValI : 187 ! |||! !:!! !|||||||||||||||||| ! ||| !|||||||||:!!|||..!! nAspLeuLeuValArgAlaGluTyrPheValAspTyrGluAspTyrPheTyrLeuIleThrT 4066 : TGACTTACTCGTTCGAGCCGAATATTTTGTCGATTACGAAGATTACTTTTATCTAATCACGA : 4128 188 : leHisIlePheIleValLeuTyrAlaGlyCysMetValLeuValAlaSerGlyGlyMetIle : 207 !|||! !!:!!! ! !! ..!!.!! ! :!!! !:!!::!|||! ! !:!!! ! hrHisThrValValGluAsnLeuCysAlaPheGlyMetGlnIleSerSerAspIleLeuAsn 4129 : CCCACACGGTTGTAGAAAATTTGTGTGCTTTTGGTATGCAAATTAGTAGCGATATTTTGAAT : 4188 208 : LeuGlyTyrValMetHisAsnCysAlaIlePheLysIleAla{Il} >>>> Target In : 222 ! ! !:!!||||||! ! !!!.!!!:|||:!!:!!.!!{ } 95 b ThrIleIleMetMetHisIleSerGlyMetPheGluValThr{Gl}++ 4189 : ACCATAATTATGATGCACATCAGTGGAATGTTCGAGGTAACT{GG}gt.............. : 4237 223 : tron 1 >>>> {e}TyrArgIleGluHisIlePheAspGluLysIleLeuGlnMetSerL : 238 p { } ! !:!!||||||:!:||||||:!! ! ! ! .!!. ++{y}IleValValGluHisLeuPheAspLysCysLysSerAlaAspGlyA 4238 : ...........ag{G}ATTGTTGTCGAGCATCTGTTCGACAAATGCAAAAGTGCTGACGGGa : 4376 239 : ysHisValArgGluTyrValLeuTyrGluArgLeuIleHisAlaValHisLeuHisArgArg : 258 .. ...... ::: |||:!!||||||:!:!.! !|||:!!:!!||||||||| snIleAspGluAsnLeuIleTyrTyrLysArgLeuLeuArgIleValAsnMetHisArgArg 4377 : atatcgacgaaaatttgatttactACAAACGTCTGCTGCGTATTGTGAATATGCATCGAAGA : 4436 259 : AlaValAspLeu : 262 !:!! ! ||| AsnLeuLysLeu 4437 : AATCTAAAGTTA : 4450 vulgar: CbirOr477 145 262 . KQ415081.1 4004 4450 + 124 M 76 228 S 0 2 5 0 2 I 0 91 3 0 2 S 1 1 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 4005 4450 124 + . gene_id 2 ; sequence CbirOr477 ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 4005 4234 . + . KQ415081.1 exonerate:protein2genome:local exon 4005 4234 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 4235 4236 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 4235 4329 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 4328 4329 . + . intron_id 0 ; splice_site "AG" KQ415081.1 exonerate:protein2genome:local cds 4330 4450 . + . KQ415081.1 exonerate:protein2genome:local exon 4330 4450 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 4005 4450 124 + . alignment_id 2 ; Query CbirOr477 ; Align 4005 146 228 ; Align 4331 223 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr477 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 139 -> 218 Target range: 11259 -> 11496 140 : ValCysLeuGlyIleValValLeuCysSerValProSerIleLeuAspIleIleIlePro : 159 :!!! !!!..!|||||| !!||| !!!!:!! !!..!! ! !:!!! |||! ! !! LeuLeuPheSerIleValPheLeuHisThrLeuSerGlnThrThrAsnThrIleThrSer 11260 : CTATTGTTCTCTATCGTCTTCTTGCATACGCTTTCGCAAACTACCAATACGATCACATCT : 11317 160 : LeuAsnGluSerArgProSerTrpLeuProIleValAlaGluTyrPheValAspGlnGlu : 179 ! !||||||!!!||| !!!:! ! ||| !:!!:!!.!!||||||||||||||| ! ||| ArgAsnGluThrArgAlaAsnGlyLeuIleValLeuThrGluTyrPheValAspTyrGlu 11318 : CGAAACGAGACCAGAGCTAATGGCTTGATAGTTTTAACCGAATACTTCGTTGATTACGAG : 11377 180 : ArgTyrPheTyrValIleValIleHisIlePheIleValLeuTyrAlaGlyCysMetVal : 199 !:!|||.!!||| !|||..!! !|||:!: !!:!!! !:!!!:! !|||! ! :!! GlnTyrIleTyrProIleThrThrHisValValValGlyIlePheMetGlyPheAlaIle 11378 : CAATACATTTATCCAATTACGACCCACGTGGTTGTAGGAATTTTTATGGGTTTTGCTATT : 11437 200 : LeuValAlaSerGlyGlyMetIleLeuGlyTyrValMetHisAsnCysAlaIlePhe : 218 ! !:!!!.!|||! ! !:!!! !:!! !!:!:!!|||||| ! !!!.!!!:||| GlnIleGlySerAspLeuLeuAsnMetIlePheMetMetHisValSerGlyMetPhe 11438 : CAAATTGGCAGCGATCTTTTGAATATGATATTTATGATGCACGTCAGTGGAATGTTC : 11496 vulgar: CbirOr477 139 218 . KQ415081.1 11259 11496 + 112 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 11260 11496 112 + . gene_id 3 ; sequence CbirOr477 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 11260 11496 . + . KQ415081.1 exonerate:protein2genome:local exon 11260 11496 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 11260 11496 112 + . alignment_id 3 ; Query CbirOr477 ; Align 11260 140 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr478 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 142 -> 219 Target range: 32515 -> 32743 143 : ThrValIleGlnCysGlyProTyrIleLeuAspValIleMetProLysAsnValSerTyr : 162 .!!:!!:!:|||! ! !|||||||||:!!||||||||| !||| !|||! !||| AlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSer--- 32516 : GCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCC--- : 32573 163 : AlaArgHisLeuIleValThrLeuThrThrTyrPheAlaValGlnGluArgTyrPheTyr : 182 !!.!|||:!!:!: ! ! ! ! !||||||!.!! !|||::::::|||||| ArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeu 32574 : CGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttccta : 32630 183 : LeuLeuLeuLeuTyrLeuAsnAlaValCysThrValGlyThrValValIleLeuAlaVal : 202 !:!! !|||:!!:!! !!.!..! !|||:!!||| !..!||| ! !|||||| ProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaVal 32631 : ccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtc : 32690 203 : GlyThrMetLeuValSerCysPheLysTyrIleCysGlyMetLeuArgVal : 219 ::::::...::: ... :!!:!!|||!.!! !!!!.!:!! AspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32691 : gattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr478 142 219 . KQ415081.1 32515 32743 + 102 M 19 57 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32516 32743 102 + . gene_id 1 ; sequence CbirOr478 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32516 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32516 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32516 32743 102 + . alignment_id 1 ; Query CbirOr478 ; Align 32516 143 57 ; Align 32573 163 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr495 Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 109 -> 221 Target range: 145 -> 481 110 : ArgIleLeuLysAsnTyrSerAsnIleAlaHisLysPheThrIleLeuTyrSerValThrLeuT : 131 ||| !! ! !||| !!..!!.!:!! ! !! !!:!! !:!! !||||||:!!..! ! ArgSerTyrLeuAsnAspGlnThrValTyrPheThrTyrIleValLysTyrSerIleValAsnA 146 : AGATCTTATTTAAACGACCAAACTGTTTATTTTACGTACATTGTCAAATATTCGATAGTGAACG : 209 132 : yrSerMetValThrMetPheIleIleIleProSerValGlyProMetPheLeuAspValValLe : 152 ! !:!: !..!!!:.!..!!:!: !! !!||| !||| .!!||||||:!!:!!|| laIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLe 210 : CGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACT : 272 153 : uProLeuAsnGluSerArgSerArgAsnPheAlaValTyrAlaGluTyrGlyIleAspGlnAsn : 173 |||| !||||||||||||..! ! !:! ! ! ||| ! ||| !! !|||:!!:!! uProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHis 273 : ACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCAT : 335 174 : ArgTyrPheValSerIleLeuLeuTyrThrSerValMetIleValValGlyValSerIleMetV : 195 !:!||| !|||! !|||:!! !:!!! !:!! !:!!|||:!!|||! ! !!! !:!: LysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrP 336 : AAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACT : 401 196 : alAlaValAspThrMetHisValAlaCysThrAlaHisAlaCysSerLeuPheGlnLeuIleGl : 216 !!||| !||||||! :!!:!! ! !..! !|||!.!|||.!!|||!!. :!! !|| heAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGl 402 : TCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGG : 464 217 : yArgGlnIleGluAsn : 221 | :::|||...::: y***LysIleArgSer 465 : gtaaaaaattcgatcg : 481 vulgar: CbirOr495 109 221 . LHQN01023902.1 145 481 + 128 M 112 336 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 146 481 128 + . gene_id 1 ; sequence CbirOr495 ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 146 481 . + . LHQN01023902.1 exonerate:protein2genome:local exon 146 481 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 146 481 128 + . alignment_id 1 ; Query CbirOr495 ; Align 146 110 336 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr481 Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 122 -> 222 Target range: 187 -> 484 123 : ThrLysValLeuThrIlePheSerIlePheGlyValPheGlyLeuIleSerValProIleLeuP : 144 ..!||| !! !! !:!: !:!!||| !! !!|||.!! !!!!:!:|||..!|||:!: !| ValLysTyrSerIleValAsnAlaIleValCysValIleLeuPheValSerThrProValThrP 188 : GTCAAATATTCGATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACAC : 251 145 : roHisIleIleAspValSerTrpProAlaAsnLysSerArgArgCysSerSerSerGlnIleLe : 165 ||||||||:!:|||:!!! ! ||| !|||:!!|||||| ! :!!! !! ! !! roHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIle---TyrPr 252 : CGCATATTTTGGACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATT---TACCC : 311 166 : uThrGluTyrPheIleAspGlnGluLysTyrPheTyrLeuIleLeuValHisMetTyrAlaAla : 186 !.!! ! ||||||! !|||:!!.!.|||||| ! ! !|||:!!..!|||||| :!!!.! oAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerVal 312 : GGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTG : 374 187 : LeuTyrValGlyAlaAlaAlaMetValSerThrGlyAlaMetSerValValTyrPheGlnHisV : 208 :!! |||! ! ! !!.! !!:!! !! !.!!! ! !:!! ! ! ! ||||||! IleLeuValValPheTyrValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisG 375 : ATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACG : 440 209 : alCysGlyMetPheLysValAlaSerTyrArgIleLysGlnSer : 222 !||||||:!!!!. |||:!!.!. :::|||:::...::: lyCysGlyLeuLeuAlaValSerGly***LysIleArgSerAsn 441 : GCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaattcgatcgaac : 484 vulgar: CbirOr481 122 222 . LHQN01023902.1 187 484 + 109 M 40 120 G 1 0 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 188 484 109 + . gene_id 1 ; sequence CbirOr481 ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 188 484 . + . LHQN01023902.1 exonerate:protein2genome:local exon 188 484 . + . insertions 0 ; deletions 1 LHQN01023902.1 exonerate:protein2genome:local similarity 188 484 109 + . alignment_id 1 ; Query CbirOr481 ; Align 188 123 120 ; Align 308 164 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr477 Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 149 -> 221 Target range: 247 -> 463 150 : ValProSerIleLeuAspIleIleIleProLeuAsnGluSerArgProSerTrpLeuProIleV : 171 ..!||| !||||||||||||:!!:!!||| !|||||||||||| ! ! !! ! ! ! ThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrP 248 : ACACCGCATATTTTGGACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACC : 311 172 : alAlaGluTyrPheValAspGlnGluArgTyrPheTyrValIleValIleHisIlePheIleVa : 192 !||| ! ||||||..!|||:!!.!.!:!||| ! !|||:!!! |||!!: !|| roAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerVa 312 : CGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGT : 374 193 : lLeuTyrAlaGlyCysMetValLeuValAlaSerGlyGlyMetIleLeuGlyTyrValMetHis : 213 |:!! !.!! !! ! |||! ! !!|||!!!! ! !! !:!! ! !|||...||| lIleLeuValValPheTyrValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHis 375 : GATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACAC : 437 214 : AsnCysAlaIlePheLysIleAla : 221 ..!|||!.!:!:!!. :!::!! GlyCysGlyLeuLeuAlaValSer 438 : GGCTGCGGATTGTTGGCCGTGTCC : 463 vulgar: CbirOr477 149 221 . LHQN01023902.1 247 463 + 101 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 248 463 101 + . gene_id 1 ; sequence CbirOr477 ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 248 463 . + . LHQN01023902.1 exonerate:protein2genome:local exon 248 463 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 248 463 101 + . alignment_id 1 ; Query CbirOr477 ; Align 248 150 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr497IC Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 107 -> 212 Target range: 142 -> 457 108 : AspValArgValLeuLysGluTyrSerThrPheSerArgLysPheThrIleTyrPheSerIleL : 129 ||| ! ! !|||!!.!!: ! !!!..!!:!! !! ! ! .!!..!! !|||! ! !:!: AspArgSerTyrLeuAsnAspGlnThrValTyrPheThrTyrIleValLysTyrSerIleValA 143 : GACAGATCTTATTTAAACGACCAAACTGTTTATTTTACGTACATTGTCAAATATTCGATAGTGA : 206 130 : euLeuTyrIleMetSerSerAlaPheIleIleValProLeuLysProIlePheLeuAspIleIl : 150 ! ! !:!! !! ! !|||:!: ..!|||:!!! !||| !.!!|||||||||:! snAlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLe 207 : ACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTT : 269 151 : eLeuProLeuAsnGluSerArgProArgPhePheAlaIleGluLeuGluCysArgLeuAspLys : 171 !|||||| !|||||||||||| ! ! !:! ! ! ! ! ! ! ! ! !|||:!! uLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGlu 270 : ACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAG : 332 172 : AsnGluHisPheLeuLeuLeuTyrPheTyrThrThrThrIleIleValValGlyIleThrIleI : 193 :!!:!!:!! !:!!! !:!! ! :!!! !.!!:!!:!:|||:!!|||! !.!! !:!: HisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValT 333 : CATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGT : 398 194 : leValAlaIleAspThrValTyrValIleSerThrThrHisAlaCysSerLeuPheAla : 212 ! !!||| !|||||| !|||:!! ! !..! !|||!.!|||.!!|||!!.||| yrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAla 399 : ACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCC : 457 vulgar: CbirOr497IC 107 212 . LHQN01023902.1 142 457 + 108 M 105 315 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 143 457 108 + . gene_id 1 ; sequence CbirOr497IC ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 143 457 . + . LHQN01023902.1 exonerate:protein2genome:local exon 143 457 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 143 457 108 + . alignment_id 1 ; Query CbirOr497IC ; Align 143 108 315 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr488 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 125 -> 225 Target range: 4975 -> 5272 126 : ThrLeuPheSerGlyCysCysLeuLeuIleLeuSerLeuLeuProIleLeuProTrpIleLe : 146 |||:!! !! !..!! ||| ! !:!!!!!! !! !||||||.!!:!! !! !||||| ThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLe 4976 : ACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCT : 5036 147 : uGlyThrPheLeuLeuValAsnGluSerArgProLeuTyrAsnMetGlnIleValThrGluT : 167 |! !! !.!!:!!! !:!!||||||!!!||| !!! !! .!. ! !.!! ! | uAspIleLeuMetProLeuAsnGluThrArgAlaArgLeu---PheValTyrProAlaTyrT 5037 : GGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTG---TTCGTCTATCCAGCTTACT : 5096 168 : yrPheValAspLysAspLysThrPheTyrLeuIleLeuLeuHisThrTyrValSerValCys : 187 |||||||||||:!!|||||| ! !|||||||||:!! !|||! !|||:!! !||| yrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValVal 5097 : ATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTA : 5156 188 : IleGlyIleIleAlaMetCysAlaAlaGlyMetMetLeuValAlaTyrLeuLysHisValCy : 208 !!: !||| !!.!.!.||||||..!! ! ! ! !||| ! !:!!:!!|||!.!|| MetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCy 5157 : ATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTG : 5219 209 : sGlyValPheSerIleAlaSerTyrAsnMetGluGlnThrMetMetLeuAsn : 225 ||||:!!!!.:!!||||||.!!!! :!::!! ! !:!:||| !||| sGlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGluAsn 5220 : CGGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAAT : 5272 vulgar: CbirOr488 125 225 . LHQN01025741.1 4975 5272 + 115 M 34 102 G 1 0 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4976 5272 115 + . gene_id 1 ; sequence CbirOr488 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4976 5272 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4976 5272 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 4976 5272 115 + . alignment_id 1 ; Query CbirOr488 ; Align 4976 126 102 ; Align 5078 161 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr477 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 127 -> 221 Target range: 4957 -> 5239 128 : PheHisThrThrLeuPheThrLeuLeuAlaThrSerValCysLeuGlyIleValValLeuCy : 148 |||:!! !|||!!! |||:!!! ! !:!!! ! !..! ! !.!!:!! !||| PheTyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuPr 4958 : TTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCC : 5018 149 : sSerValProSerIleLeuAspIleIleIleProLeuAsnGluSerArgProSerTrpLeuP : 169 ! !||| !! !!||||||||||||:!!!!:||||||||||||!!!||| !! !!! !!!! oPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheV 5019 : GTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCG : 5081 170 : roIleValAlaGluTyrPheValAspGlnGluArgTyrPheTyrValIleValIleHisIle : 189 ! ! !||| ! ||||||||||||:!!!!:!:!||| !|||:!!|||||| |||!!: alTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMet 5082 : TCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATG : 5141 190 : PheIleValLeuTyrAlaGlyCysMetValLeuValAlaSerGlyGlyMetIleLeuGlyTy : 210 !:!:!!|||:!! ! ! ! |||!!! !|||!!!! !!.!! !:!! ! TyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAl 5142 : TATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGC : 5204 211 : rValMetHisAsnCysAlaIlePheLysIleAla : 221 !|||...||| !|||!.!:!:!!. |||||| aValGlnHisAlaCysGlyLeuLeuAlaIleAla 5205 : CGTGCAACACGCTTGCGGATTGTTGGCCATTGCA : 5239 vulgar: CbirOr477 127 221 . LHQN01025741.1 4957 5239 + 130 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4958 5239 130 + . gene_id 1 ; sequence CbirOr477 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4958 5239 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4958 5239 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4958 5239 130 + . alignment_id 1 ; Query CbirOr477 ; Align 4958 128 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr485PI Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 140 -> 244 Target range: 11507 -> 11816 141 : LeuProValValProArgIleLeuArgThrPheThrSerIleAsnValSerAspGluHis : 160 :!!||| !..! !!|||:!::!!!.!:!!!:!! !!!! |||:!!!!! ... ValProTrpThrThrArgLeuValAsnSerTyrLysThrGlnAsnIleThrProSer--- 11508 : GTGCCATGGACGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGT--- : 11565 161 : PheMetIleHisIleThrArgGluTyrPheValAspGlnGluLysTyrPheTyrTyrIle : 180 !!.....!! !||| !! !! ! ||||||||||||:!!! !:!!|||!:!||||||||| LeuGlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIle 11566 : TTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATC : 11622 181 : LeuLeuHisLeuGlyAlaSerPheLeuIleGlyThrIleValIleValGlyThrGlySer : 200 :!!|||||| ! !..!!!! !!||||||! !..!:!:||| ! !!.! !! !!!! IleLeuHisGlyThrCysThrValLeuIleValValValValTyrCysAlaCysAspThr 11623 : ATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACC : 11682 201 : LeuLeuPheGlyCysMetLysTyrMetCysGlyLeuPheArgIleAlaSerTyrArgIle : 220 !! !.!.! ! :!!:!!:!!! |||||||||||| !:!:|||.!!! ..!! ! SerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly***GluAsn 11683 : AGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGGTGAGAAAAC : 11742 221 : AspGlnThrMetGluThrProMetPheGlnSerAlaGlyLeuSerLysAspCysValThr : 240 ::: |||...|||!.!..!! !! !::!||||||||| ! LeuArgAspThrPhePheLeuSerPheSerSerGlyAsnTyrTyrArgAspCysValGlu 11743 : TTGAGagatacattttttctctcattttcgtCGGGAAATTATTATCGAGATTGCGTGGAA : 11802 241 : TyrLysAsnIle : 244 !..!.!.||| ArgSerGlnIle 11803 : CGTTCACAGATA : 11816 vulgar: CbirOr485PI 140 244 . LHQN01025741.1 11507 11816 + 104 M 19 57 G 1 0 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11508 11816 104 + . gene_id 1 ; sequence CbirOr485PI ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11508 11816 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11508 11816 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 11508 11816 104 + . alignment_id 1 ; Query CbirOr485PI ; Align 11508 141 57 ; Align 11565 161 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr496PSE Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 121 -> 224 Target range: 4960 -> 5269 122 : PheThrIleTyrPheSerIleLeuValTyrIleMetThrSerAlaPheIleIleValProLe : 142 !:! !! !:! !!!:!:! !:!!! :!! .!!:!! !|||!!: !:!!|||!! TyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPh 4961 : TATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTT : 5021 143 : uThrProIlePheLeuAspPheMetLeuProLeuAsnGluSerArgProArgPhePheAlaI : 163 !..! !! .!!||||||.!!:!::!!||||||||||||!!!||| !!|||!!.|||!.! eValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValT 5022 : CGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCT : 5084 164 : leGluIleGluPheArgLeuAspLysAsnGluTyrPheLeuProLeuTyrPheTyrThrThr : 183 ! ! ! ! !:! !:!!|||:!!:!!:!!||| !! ! !:!! :!!! ! ! yrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyr 5085 : ATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTAT : 5144 184 : ThrAlaIleValValGlyIleThrIleValValAlaValAspAlaMetHisIleThrCysTh : 204 !!.!:!:|||:!! !|||:!!:!! !! !||| !||||||! :!!:!: !..!.. LeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaVa 5145 : CTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGT : 5207 205 : rThrHisAlaCysSerLeuPheAlaSerValSerGlnGlnValGluAsnMetIleLeuLys : 224 ! !|||||||||.!!|||!!.|||! !!.!.!! !! !|||:!!......:!!:!!:!! lGlnHisAlaCysGlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGlu 5208 : GCAACACGCTTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAA : 5269 vulgar: CbirOr496PSE 121 224 . LHQN01025741.1 4960 5269 + 123 M 103 309 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4961 5269 123 + . gene_id 1 ; sequence CbirOr496PSE ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4961 5269 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4961 5269 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4961 5269 123 + . alignment_id 1 ; Query CbirOr496PSE ; Align 4961 122 309 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr495 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 126 -> 216 Target range: 4975 -> 5242 127 : SerValThrLeuTyrSerMetValThrMetPheIleIleIleProSerValGlyProMetPh : 147 !!!||| !:!!! ! ! !.!.!!:!:|||!!: !:!:|||! !|||..!|||!!: ThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIle-- 4976 : ACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATT-- : 5036 148 : eLeuAspValValLeuProLeuAsnGluSerArgSerArgAsnPheAlaValTyrAlaGluT : 168 ||||||:!!:!!:!!||||||||||||!!!|||:!!||| |||!.! ! ||| ! | -LeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrT 5037 : -CTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACT : 5096 169 : yrGlyIleAspGlnAsnArgTyrPheValSerIleLeuLeuTyrThrSerValMetIleVal : 188 || !:!!|||:!!:!!!:!||| ! !! !|||:!! !:!!! !! !:!!:!::!:||| yrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValVal 5097 : ATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTA : 5156 189 : ValGlyValSerIleMetValAlaValAspThrMetHisValAlaCysThrAlaHisAlaCy : 209 :!! !:!!|||:!!.!. !||| !|||.!!! :!!||| !..!..! !|||||||| MetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCy 5157 : ATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTG : 5219 210 : sSerLeuPheGlnLeuIleGly : 216 |.!!|||!!. :!! !||| sGlyLeuLeuAlaIleAlaGly 5220 : CGGATTGTTGGCCATTGCAGGG : 5242 vulgar: CbirOr495 126 216 . LHQN01025741.1 4975 5242 + 137 M 20 60 G 1 0 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4976 5242 137 + . gene_id 1 ; sequence CbirOr495 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4976 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4976 5242 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 4976 5242 137 + . alignment_id 1 ; Query CbirOr495 ; Align 4976 127 60 ; Align 5036 148 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr497IC Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 121 -> 212 Target range: 4960 -> 5233 122 : PheThrIleTyrPheSerIleLeuLeuTyrIleMetSerSerAlaPheIleIleValProLe : 142 !:! !! !:! !!!:!:! !:!!! :!! :!!:!! !|||!!: !:!!|||!! TyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPh 4961 : TATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTT : 5021 143 : uLysProIlePheLeuAspIleIleLeuProLeuAsnGluSerArgProArgPhePheAlaI : 163 ! ! !! .!!|||||||||:!!:!!||||||||||||!!!||| !!|||!!.|||!.! eValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValT 5022 : CGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCT : 5084 164 : leGluLeuGluCysArgLeuAspLysAsnGluHisPheLeuLeuLeuTyrPheTyrThrThr : 183 ! ! ! ! ! ! !:!!|||:!!:!!:!!:!! !! !|||:!! :!!! ! ! yrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyr 5085 : ATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTAT : 5144 184 : ThrIleIleValValGlyIleThrIleIleValAlaIleAspThrValTyrValIleSerTh : 204 !:!!:!:|||:!! !|||:!!:!!.!! !||| !|||.!! !|||||| !:!!.. LeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaVa 5145 : CTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGT : 5207 205 : rThrHisAlaCysSerLeuPheAla : 212 ! !|||||||||.!!|||!!.||| lGlnHisAlaCysGlyLeuLeuAla 5208 : GCAACACGCTTGCGGATTGTTGGCC : 5233 vulgar: CbirOr497IC 121 212 . LHQN01025741.1 4960 5233 + 126 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4961 5233 126 + . gene_id 1 ; sequence CbirOr497IC ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4961 5233 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4961 5233 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4961 5233 126 + . alignment_id 1 ; Query CbirOr497IC ; Align 4961 122 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr497IC Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 124 -> 212 Target range: 5693 -> 5429 125 : TyrPheSerIleLeuLeuTyrIleMetSerSerAlaPheIleIleValProLeuLysProIl : 145 !:! !.!:!:! !:!!! :!! :!!:!! !|||!!: !:!!|||!!! ! !! PheGluLysValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerPr 5693 : TTTGAAAAAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCC : 5633 146 : ePheLeuAspIleIleLeuProLeuAsnGluSerArgProArgPhePheAlaIleGluLeuG : 166 .!!|||||||||:!!:!!||||||||||||!!!||| !!|||!!.|||!.! ! ! ! oIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaT 5632 : GATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTT : 5570 167 : luCysArgLeuAspLysAsnGluHisPheLeuLeuLeuTyrPheTyrThrThrThrIleIle : 186 ! ! ! !:!!|||:!!:!!:!!:!! !! !|||:!! :!!! ! ! !:!!:!: yrTyrPheValAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValVal 5569 : ACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTG : 5510 187 : ValValGlyIleThrIleIleValAlaIleAspThrValTyrValIleSerThrThrHisAl : 207 |||:!! !|||:!!:!!.!! !||| !|||.!! !|||||| !:!!..! !||||| ValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAl 5509 : GTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGC : 5447 208 : aCysSerLeuPheAla : 212 ||||.!!|||!!.||| aCysGlyLeuLeuAla 5446 : TTGCGGATTGTTGGCC : 5430 vulgar: CbirOr497IC 124 212 . LHQN01028732.1 5693 5429 - 123 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5430 5693 123 - . gene_id 1 ; sequence CbirOr497IC ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5430 5693 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5430 5693 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5430 5693 123 - . alignment_id 1 ; Query CbirOr497IC ; Align 5694 125 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr488 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 131 -> 225 Target range: 5669 -> 5390 132 : CysLeuLeuIleLeuSerLeuLeuProIleLeuProTrpIleLeuGlyThrPheLeuLeuVa : 152 ||| ! !:!!!!!! !! !||||||.!!:!! !! !||||||! !! !.!!:!!! !:! CysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLe 5669 : TGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTT : 5609 153 : lAsnGluSerArgProLeuTyrAsnMetGlnIleValThrGluTyrPheValAspLysAspL : 173 !||||||!!!||| !!! !! .!. ! !.!! ! ||||||||||||:!!|||| uAsnGluThrArgAlaArgLeu---PheValTyrProAlaTyrTyrPheValAspGluAspL 5608 : GAACGAGACGCGAGCACGGTTG---TTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACA : 5549 174 : ysThrPheTyrLeuIleLeuLeuHisThrTyrValSerValCysIleGlyIleIleAlaMet : 193 || ! !|||||||||:!! !|||! !|||:!! !||| !!: !||| !!.!.!. ysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPhe 5548 : AATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTC : 5489 194 : CysAlaAlaGlyMetMetLeuValAlaTyrLeuLysHisValCysGlyValPheSerIleAl : 214 ||||||..!! ! ! ! !||| ! !:!!:!!|||!.!||||||:!!!!.:!!||||| CysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAl 5488 : TGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGC : 5426 215 : aSerTyrAsnMetGluGlnThrMetMetLeuAsn : 225 |.!!!! :!::!! ! !:!:||| !||| aGly***LeuValGlnGlyGlnLeuMetGluAsn 5425 : AGGGTAATTAGTTCAAGGACAATTAATGGAAAAT : 5391 vulgar: CbirOr488 131 225 . LHQN01028732.1 5669 5390 - 111 M 28 84 G 1 0 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5391 5669 111 - . gene_id 1 ; sequence CbirOr488 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5391 5669 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5391 5669 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5391 5669 111 - . alignment_id 1 ; Query CbirOr488 ; Align 5670 132 84 ; Align 5586 161 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr495 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 133 -> 216 Target range: 5666 -> 5420 134 : ValThrMetPheIleIleIleProSerValGlyProMetPheLeuAspValValLeuProLe : 154 !.!.!!:!:|||!!: !:!:|||! !|||..!|||!!: ||||||:!!:!!:!!||||| AlaAlaLeuPheMetCysLeuProPheValSerProIle---LeuAspIleLeuMetProLe 5666 : GCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATT---CTGGACATCCTTATGCCGTT : 5609 155 : uAsnGluSerArgSerArgAsnPheAlaValTyrAlaGluTyrGlyIleAspGlnAsnArgT : 175 |||||||!!!|||:!!||| |||!.! ! ||| ! ||| !:!!|||:!!:!!!:!| uAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysT 5608 : GAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAAT : 5546 176 : yrPheValSerIleLeuLeuTyrThrSerValMetIleValValGlyValSerIleMetVal : 195 || ! !! !|||:!! !:!!! !! !:!!:!::!:|||:!! !:!!|||:!!.!. ! yrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCys 5545 : ATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGC : 5486 196 : AlaValAspThrMetHisValAlaCysThrAlaHisAlaCysSerLeuPheGlnLeuIleGl : 216 ||| !|||.!!! :!!||| !..!..! !|||||||||.!!|||!!. :!! !|| AlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGl 5485 : GCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGG : 5423 217 : y : 216 | y 5422 : G : 5421 vulgar: CbirOr495 133 216 . LHQN01028732.1 5666 5420 - 135 M 13 39 G 1 0 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5666 135 - . gene_id 1 ; sequence CbirOr495 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5666 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5666 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5666 135 - . alignment_id 1 ; Query CbirOr495 ; Align 5667 134 39 ; Align 5628 148 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr496PSE Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 124 -> 224 Target range: 5693 -> 5393 125 : TyrPheSerIleLeuValTyrIleMetThrSerAlaPheIleIleValProLeuThrProIl : 145 !:! !.!:!:! !:!!! :!! .!!:!! !|||!!: !:!!|||!!!..! !! PheGluLysValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerPr 5693 : TTTGAAAAAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCC : 5633 146 : ePheLeuAspPheMetLeuProLeuAsnGluSerArgProArgPhePheAlaIleGluIleG : 166 .!!||||||.!!:!::!!||||||||||||!!!||| !!|||!!.|||!.! ! ! ! oIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaT 5632 : GATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTT : 5570 167 : luPheArgLeuAspLysAsnGluTyrPheLeuProLeuTyrPheTyrThrThrThrAlaIle : 186 ! !:! !:!!|||:!!:!!:!!||| !! ! !:!! :!!! ! ! !!.!:!: yrTyrPheValAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValVal 5569 : ACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTG : 5510 187 : ValValGlyIleThrIleValValAlaValAspAlaMetHisIleThrCysThrThrHisAl : 207 |||:!! !|||:!!:!! !! !||| !||||||! :!!:!: !..!..! !||||| ValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAl 5509 : GTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGC : 5447 208 : aCysSerLeuPheAlaSerValSerGlnGlnValGluAsnMetIleLeuLys : 224 ||||.!!|||!!.|||! !!.!.!! !! !|||:!!......:!!:!!:!! aCysGlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGlu 5446 : TTGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAA : 5394 vulgar: CbirOr496PSE 124 224 . LHQN01028732.1 5693 5393 - 120 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5394 5693 120 - . gene_id 1 ; sequence CbirOr496PSE ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5394 5693 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5394 5693 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5394 5693 120 - . alignment_id 1 ; Query CbirOr496PSE ; Align 5694 125 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr477 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 149 -> 221 Target range: 5639 -> 5423 150 : ValProSerIleLeuAspIleIleIleProLeuAsnGluSerArgProSerTrpLeuProIl : 170 ||| !! !!||||||||||||:!!!!:||||||||||||!!!||| !! !!! !!!! ! ValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTy 5639 : GTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTA : 5579 171 : eValAlaGluTyrPheValAspGlnGluArgTyrPheTyrValIleValIleHisIlePheI : 191 ! !||| ! ||||||||||||:!!!!:!:!||| !|||:!!|||||| |||!!:!:!: rProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrL 5578 : TCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATC : 5516 192 : leValLeuTyrAlaGlyCysMetValLeuValAlaSerGlyGlyMetIleLeuGlyTyrVal : 211 !!|||:!! ! ! ! |||!!! !|||!!!! !!.!! !:!! ! !||| euValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaVal 5515 : TTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTG : 5456 212 : MetHisAsnCysAlaIlePheLysIleAla : 221 ...||| !|||!.!:!:!!. |||||| GlnHisAlaCysGlyLeuLeuAlaIleAla 5455 : CAACACGCTTGCGGATTGTTGGCCATTGCA : 5424 vulgar: CbirOr477 149 221 . LHQN01028732.1 5639 5423 - 126 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5424 5639 126 - . gene_id 1 ; sequence CbirOr477 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5424 5639 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5424 5639 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5424 5639 126 - . alignment_id 1 ; Query CbirOr477 ; Align 5640 150 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr477 Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 103 -> 258 Target range: 352 -> 912 104 : ArgTyrAspTrpLysMetLeuLysAsnGlnThrGluPheAspIleIleGlnLysTyrAlaAspA : 125 !:!|||:!! ! :!:!!!:::!!.:!!! !:!!!:! !! !! !::!:!! !:!!! LysTyrAsnMetLeuLeuPheArgLysGluIleGlnTyrTyrSerSerArgGluThrPheAsnP 353 : AAATATAATATGCTTTTATTTCGTAAGGAAATCCAGTATTATTCCAGTAGGGAGACATTTAACC : 416 126 : rgThrArgPheHisThrThrLeuPheThrLeuLeuAlaThrSerValCysLeuGlyIleValVa : 146 !! !! !.!! !! !:!!:!!.!! !!:!!!!!:!! !! !:!! !||||||.!!||| ! roLysMetIleAspPheSerIleIleProValPheSerPheLeuLeuLeuLeuGlyPheValPh 417 : CTAAAATGATCGATTTTTCCATTATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTT : 479 147 : lLeuCysSerValProSerIleLeuAspIleIleIleProLeuAsnGluSerArgProSerTrp : 167 !||| ! !:!!|||..!||||||! !|||||| !||||||!.!|||! !!.! !!!:! eLeuGlnIleLeuProGlnIleLeuGlyIleIleSerProLeuThrGluIleAsnThrAsnLys 480 : CTTGCAAATTCTCCCGCAAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAACAAA : 542 168 : LeuProIleValAlaGluTyrPheValAspGlnGluArgTyrPheTyrValIleValIleHisI : 189 |||! !:!! !.!!||||||||||||||| ! :!! !|||.!!|||:!!|||..!|||||| LeuLeuValArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisA 543 : TTACTCGTTCGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACG : 608 190 : lePheIleValLeuTyrAlaGlyCysMetValLeuValAlaSerGlyGlyMetIleLeuGlyTy : 210 !|||!.!:!! ..!.!! ! :!!! !:!!::!|||! ! ::: :: laThrIleAlaIleMetCysSerValThrMetGlnIleSerSerAspIleLeuAsnAsnIlePh 609 : CGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaataacatatt : 671 211 : rValMetHisAsnCysAlaIlePheLysIleAla{Il} >>>> Target Intron 1 >>> : 222 :::!||||||! ! !!!.!!!:|||:!!:!! !{ } 95 bp eMetMetHisIleSerGlyMetPheGluValIle{Gl}++ 672 : tatGATGCACATCAGTGGAATGTTCGAGGTAATT{GG}gt........................ : 711 223 : > {e}TyrArgIleGluHisIlePheAspGluLysIleLeuGlnMetSerLysHisValArgG : 242 { } ! !:!!||||||:!:||||||:!! ! ! ! ..!!!. !! !..!. ++{y}IleValValGluHisLeuPheAspLysCysLysSerAlaAspGluAsnIleAspGluA 712 : .ag{G}ATTGTTGTCGAGCATCTGTTCGACAAATGCAAAAGTGCTGACGAGAATATCGACGAAA : 862 243 : luTyrValLeuTyrGluArgLeuIleHisAlaValHisLeuHisArgArg : 258 !. :!!!!!||| !||||||:!:!.! !:!!:!!:!!||||||||| snLeuIlePheTyrThrArgLeuLeuArgIleMetAsnMetHisArgArg 863 : ATCTGATTTTCTACACACGGTTGCTGCGTATTATGAACATGCACAGAAGA : 912 vulgar: CbirOr477 103 258 . LHQN01050134.1 352 912 + 151 M 118 354 S 0 2 5 0 2 I 0 91 3 0 2 S 1 1 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 353 912 151 + . gene_id 1 ; sequence CbirOr477 ; gene_orientation + LHQN01050134.1 exonerate:protein2genome:local cds 353 708 . + . LHQN01050134.1 exonerate:protein2genome:local exon 353 708 . + . insertions 0 ; deletions 0 LHQN01050134.1 exonerate:protein2genome:local splice5 709 710 . + . intron_id 1 ; splice_site "GT" LHQN01050134.1 exonerate:protein2genome:local intron 709 803 . + . intron_id 1 LHQN01050134.1 exonerate:protein2genome:local splice3 802 803 . + . intron_id 0 ; splice_site "AG" LHQN01050134.1 exonerate:protein2genome:local cds 804 912 . + . LHQN01050134.1 exonerate:protein2genome:local exon 804 912 . + . insertions 0 ; deletions 0 LHQN01050134.1 exonerate:protein2genome:local similarity 353 912 151 + . alignment_id 1 ; Query CbirOr477 ; Align 353 104 354 ; Align 805 223 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr483INT Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 64 -> 154 Target range: 436 -> 703 65 : IleIleIleLeuPheAlaIleCysGlyValPheThrIleSerPheLeuSerIleTrpProCysI : 86 |||||| !:!!|||:!!.!!! !:!!.!! !.!! !||||||..!||| ||| | IleIleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuProGlnI 437 : ATTATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAA : 500 87 : leLeuGlyValIleLeuProLeuLysAlaSerArgSerArgSerAlaMetGlnValValThrGl : 107 ||||||||:!!|||! !||||||! ! !! !!.!!!!!.!!.! !:!: ||| !||||| leLeuGlyIleIleSerProLeuThrGluIleAsnThrAsnLysLeuLeu---ValArgThrGl 501 : TTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAACAAATTACTC---GTTCGAACCGA : 560 108 : uTyrPheIleAspGlnGluLysTyrPheTyrLeuIleLeuLeuHisMetAsnValThrIleTyr : 128 |||||||:!!||| ! :!! ! |||.!!||||||||| !:!!||| !!.!:!!.!!||| uTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAlaThrIleAlaIleMet 561 : ATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCGACTATAGCAATAATG : 623 129 : IleGlyAlaThrAlaValIleAlaThrGlyThrMetLeuMetGlyTyrLeuLysHisIleCysG : 150 !.!!!.!||| ! !|||::!!:!! !! ::: :::::!! !|||||| !!| CysSerValThrMetGlnIleSerSerAspIleLeuAsnAsnIlePheMetMetHisIleSerG 624 : TGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaataacatatttatGATGCACATCAGTG : 689 151 : lyMetPheSerIle : 154 ||||||||..!:!! lyMetPheGluVal 690 : GAATGTTCGAGGTA : 703 vulgar: CbirOr483INT 64 154 . LHQN01050134.1 436 703 + 132 M 38 114 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 437 703 132 + . gene_id 1 ; sequence CbirOr483INT ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 437 703 . + . LHQN01050134.1 exonerate:protein2genome:local exon 437 703 . + . insertions 0 ; deletions 1 LHQN01050134.1 exonerate:protein2genome:local similarity 437 703 132 + . alignment_id 1 ; Query CbirOr483INT ; Align 437 65 114 ; Align 551 104 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr481 Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 123 -> 214 Target range: 433 -> 703 124 : LysValLeuThrIlePheSerIlePheGlyValPheGlyLeuIleSerValProIleLeuProH : 145 ...:!!:!! !!:!:||||||.!!!!. !:!!.!!|||!!!:!!! !:!!! !|||||||||! SerIleIleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuProG 434 : TCCATTATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGC : 497 146 : isIleIleAspValSerTrpProAlaAsnLysSerArgArgCysSerSerSerGlnIleLeuTh : 166 !.|||:!!! !:!!! !! ||| !!.!:!!! ! !.! !!:!!.!! !! :!!! !|| lnIleLeuGlyIleIleSerProLeuThrGluIle---AsnThrAsnLysLeuLeuValArgTh 498 : AAATTTTAGGCATAATTTCACCTCTAACCGAGATC---AATACTAACAAATTACTCGTTCGAAC : 557 167 : rGluTyrPheIleAspGlnGluLysTyrPheTyrLeuIleLeuValHisMetTyrAlaAlaLeu : 187 ||||||||||:!!||| ! :!! ! |||.!!||||||||| !:!!||| ! ! !|||:!! rGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAlaThrIleAlaIle 558 : CGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCGACTATAGCAATA : 620 188 : TyrValGlyAlaAlaAlaMetValSerThrGlyAlaMetSerValValTyrPheGlnHisValC : 209 !.!!!.!.!! !...:!!|||!:!! ! :::::: ::::::.....!|||:!! MetCysSerValThrMetGlnIleSerSerAspIleLeuAsnAsnIlePheMetMetHisIleS 621 : ATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaataacatatttatGATGCACATCA : 686 210 : ysGlyMetPheLysVal : 214 !!|||||||||:!!||| erGlyMetPheGluVal 687 : GTGGAATGTTCGAGGTA : 703 vulgar: CbirOr481 123 214 . LHQN01050134.1 433 703 + 129 M 33 99 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 434 703 129 + . gene_id 1 ; sequence CbirOr481 ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 434 703 . + . LHQN01050134.1 exonerate:protein2genome:local exon 434 703 . + . insertions 0 ; deletions 1 LHQN01050134.1 exonerate:protein2genome:local similarity 434 703 129 + . alignment_id 1 ; Query CbirOr481 ; Align 434 124 99 ; Align 533 158 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr2 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 331 -> 405 Target range: 204721 -> 204940 332 : IlePheValAsnValPheIleLeuSerTyrValGlyAspLysValLysGluGlnSerG : 351 :::||| :::::! !|||||| ... ...:::..! !:!!|||| LeuPhePheProLeuTyrTyrLeuSerSerPheSerIleSerLeuSerIleLysSerG 204722 : cttttctttcctctatACTACTTgtcttcattttcaatttctttgtCGATAAAGTCCG : 204779 352 : luAlaIleGlyPheSerAlaTyrSerMetGlnTrpValAspLeuProAsnGluPheIl : 370 ||! !:!! ! !!:!!||||||..! :!!|||:!!:!!||| !:::.!. ! luGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsn---Ly 204780 : AAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAAC---AA : 204833 371 : eMetLysAspLeuLysPheValMetAlaArgAlaAsnGlnProThrArgLeuThrAla : 389 !|||..!|||! !!.:!!||||||||||||.!.::!||| ! !!||||||||| sAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuThrAla 204834 : GGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGca : 204890 390 : GlyLysLeuPheAspLeuSerLeuGlnGlyPheCysAspValAlaLys : 405 |||||||||||| ::!!!!:!!! ! !||||||:!!|||.!!:!! GlyLysLeuPheProMetThrMetLeuThrPheCysAsnValThrGln 204891 : ggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTCACTCAG : 204940 vulgar: NvOr2 331 405 . KQ414617.1 204721 204940 + 110 M 37 111 G 1 0 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204722 204940 110 + . gene_id 1 ; sequence NvOr2 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204722 204940 . + . KQ414617.1 exonerate:protein2genome:local exon 204722 204940 . + . insertions 0 ; deletions 1 KQ414617.1 exonerate:protein2genome:local similarity 204722 204940 110 + . alignment_id 1 ; Query NvOr2 ; Align 204722 332 111 ; Align 204833 370 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr513PSE(F) Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 153 -> 211 Target range: 357464 -> 357638 154 : GluProTyrArgAsnIleTyrIleArgThrGluTyrPheValAspGluGluLysTyrP : 173 ||| !!! ! !|||:!!|||.!!! !! !!!:||||||||||||:::|||||||||| GluSerSerSerAsnLeuTyrPheThrIleAspTyrPheValAspAspGluLysTyrP 357465 : GAATCGTCTTCGAATCTATACTTCACCATAGACTACTTCGTCGACgacgaaaaatact : 357522 174 : heTyrPheIleLeuLeuHisLeuTyrAlaAlaGlnTyrIleAlaGlyAlaThrLeuLe : 192 ||||| !!! !!!||||||:!!||| ! ! ! !:!!!.!.!!.!!..!:!!|| heTyrValLysPheLeuHisValTyrLeuTyrPheSerLeuGlySerThrValIleLe 357523 : tttacgTCAAGTTCTTACATGTGTATCTATATTTTTCCCTCGGAAGTACAGTCATTCT : 357579 193 : uGlyArgAlaIleValIleThrGlyTyrGlyIleTyrSerCysGlyLeuPheAsnIle : 211 |||| !! !:!!..!! !! ! !!:!!.!! !!:!:!!! !||||||!:!.!.:!! uGlySerGluValThrThrIleMetPheAlaAsnPheAlaSerGlyLeuTyrGlnVal 357580 : AGGATCAGAAGTAACAACTATTATGTTCGCTAATTTTGCGTCTGGGTTATATCAGGTA : 357636 vulgar: CbirOr513PSE(F) 153 211 . KQ414693.1 357464 357638 + 108 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 357465 357638 108 + . gene_id 1 ; sequence CbirOr513PSE(F) ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 357465 357638 . + . KQ414693.1 exonerate:protein2genome:local exon 357465 357638 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 357465 357638 108 + . alignment_id 1 ; Query CbirOr513PSE(F) ; Align 357465 154 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr515 Target: KQ414693.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold187, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 163 -> 214 Target range: 357485 -> 357638 164 : PheLeuThrGluTyrPheValAspGluGluLysTyrPheTyrLeuIleLeuLeuHisT : 183 ||| !! !!!:||||||||||||:::|||||||||||||||:!!! !!!||||||. PheThrIleAspTyrPheValAspAspGluLysTyrPheTyrValLysPheLeuHisV 357486 : TTCACCATAGACTACTTCGTCGACgacgaaaaatacttttacgTCAAGTTCTTACATG : 357543 184 : hrAsnValAlaPheSerIleGlyGlyThrAlaPheAlaAlaThrGlyLeuMetLeuLe : 202 .! !!:!! !||||||:!!|||.!!|||!.!.!! !!.!:!!! !:!!! !:! alTyrLeuTyrPheSerLeuGlySerThrValIleLeuGlySerGluValThrThrIl 357544 : TGTATCTATATTTTTCCCTCGGAAGTACAGTCATTCTAGGATCAGAAGTAACAACTAT : 357600 203 : uSerTyrValGluHisSerCysGlyMetPheGlnIle : 214 !! !!:!!.!.!. !:!!! !|||:!:!:!|||:!! eMetPheAlaAsnPheAlaSerGlyLeuTyrGlnVal 357601 : TATGTTCGCTAATTTTGCGTCTGGGTTATATCAGGTA : 357638 vulgar: CbirOr515 163 214 . KQ414693.1 357485 357638 + 110 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414693.1 exonerate:protein2genome:local gene 357486 357638 110 + . gene_id 1 ; sequence CbirOr515 ; gene_orientation . KQ414693.1 exonerate:protein2genome:local cds 357486 357638 . + . KQ414693.1 exonerate:protein2genome:local exon 357486 357638 . + . insertions 0 ; deletions 0 KQ414693.1 exonerate:protein2genome:local similarity 357486 357638 110 + . alignment_id 1 ; Query CbirOr515 ; Align 357486 164 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr1 Target: KQ414731.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold204, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1168 Query range: 0 -> 348 Target range: 591043 -> 587891 1 : MetMetLysMetLysGlnGlnGlyLeuValAlaAspLeuLeuProAsnIleArgValM : 20 |||||||||.!.|||||||||||||||||||||||||||:!!|||||||||!:!:!!| MetMetLysPheLysGlnGlnGlyLeuValAlaAspLeuMetProAsnIleLysLeuM 591043 : ATGATGAAGTTCAAGCAACAGGGGCTAGTCGCGGACTTAATGCCCAACATAAAGCTGA : 590986 21 : etGlnGlyValGlyHisPheMetPheAsnTyrTyrSerGlu<->GlyLysLysPhePr : 38 ||:!!!.! !|||||||||:!!||||||||||||!!!!!: !.!! !||| ! etLysAlaSerGlyHisPheLeuPheAsnTyrTyrThrAspAsnAlaThrLysGlyMe 590985 : TGAAAGCCAGTGGGCATTTTTTGTTCAACTATTACACTGACAATGCTACGAAGGGTAT : 590929 39 : oHisArgIleTyrCysIle >>>> Target Intron 1 >>>> ValThrLeuL : 48 !|||!:!|||||||||||| 419 bp ||| !|||: tHisLysIleTyrCysIle++ ++ValHisLeuV 590928 : GCACAAAATCTACTGCATCgt.........................agGTGCATCTAG : 590480 49 : euMetLeuLeuMetGlnTyrGlyMetMetAlaValAsnLeuMetMetGluSerAspAs : 67 !!:!!:!!|||!!:|||!:!|||.!. !.!:!!|||||||||:!!||||||||||| alLeuIleLeuIleGlnPheGlyPheCysGlyIleAsnLeuMetLeuGluSerAspAs 590479 : TACTGATCCTAATACAGTTCGGATTCTGCGGTATAAACCTAATGTTGGAGAGCGACGA : 590423 68 : pValAspAspLeuThrAlaAsnThrIleThrMetLeuPhePheLeuHisProIleVal : 86 |||||||!!:||||||||||||||||||||||||||||||||| !||| !:!:||| pValAspGluLeuThrAlaAsnThrIleThrMetLeuPhePheThrHisSerValVal 590422 : CGTTGACGAACTGACGGCGAACACGATCACGATGCTGTTCTTCACGCACAGCGTGGTT : 590366 87 : LysMetIleTyrPheProValArgSerLysIlePheTyrLysThrLeuAlaIleTrpA : 106 |||:!: !|||||| !!||||||||||||:!:||||||!:!|||!!!!.!||||||| LysLeuGlyTyrPheAlaValArgSerLysLeuPheTyrArgThrPheGlyIleTrpA 590365 : AAGCTCGGTTATTTCGCCGTCAGGAGCAAGTTGTTCTACAGAACCTTCGGTATTTGGA : 590306 107 : snAsnProAsnSerHisProLeuPheAlaGluSerAsnAlaArgPheHisAlaLeuAl : 125 ||||||||||||||||||||||||||||||||||||||||||||!:!||| !:!!|| snAsnProAsnSerHisProLeuPheAlaGluSerAsnAlaArgTyrHisGlnIleAl 590305 : ATAATCCGAACAGCCATCCTCTGTTCGCCGAGAGTAACGCGCGTTATCATCAGATTgc : 590249 126 : aIleThrLysMetArgArgLeuLeuPheCysValAlaGlyAlaThrIlePheSerVal : 144 |::: ||||||||| ||||||.!...!||| !|||.!!!:!:!:.!!!!!||| aValLysLysMetArgIleLeuLeuMetAlaValMetGlyThrSerValLeuThrVal 590248 : tgtgaaaaaaatgagaatacTGTTGATGGCCGTCATGGGAACCAGTGTGCTCACCGTC : 590192 145 : IleSerTrpThrGlyIleThrPheValAspGluSerValLysArgIleValAspProG : 164 |||||||||||| !|||||||||:!!! !!!:|||||||||!:!:!!|||||||||! IleSerTrpThrThrIleThrPheIleGlyAspSerValLysLysValValAspProV 590191 : ATTTCTTGGACCACAATCACGTTCATCGGTGATTCCGTGAAGAAGGTCGTCGATCCTG : 590132 165 : luThrAsnGluThrThrIleIlePro >>>> Target Intron 2 >>>> Ile : 173 ||||||||||||:!!.!!:!! 672 bp :!! alThrAsnGluThrSerPheValGlu++ ++Val 590131 : TTACCAACGAAACCTCTTTTGTCGAggt.........................agGTA : 589433 174 : ProArgLeuMetIleArgThrPheTyrProPheAsnAlaMetSerGlyAlaGlyHisV : 193 ||||||||||||:!:|||:!!!::||||||!:!:!! !!! !||| !!.!|||: ProArgLeuMetValArgSerTrpTyrProTyrAspProSerHisGlyMetAlaHisI 589432 : CCAAGATTGATGGTGCGTTCTTGGTATCCGTACGACCCCAGCCACGGGATGGCTCACA : 589373 194 : alPheAlaLeuIleTyrGlnPheTyrTyrLeuIleIleSerMetAlaIleSerAsnSe : 212 !!.!!.!!|||:!!!:!|||.!!|||!::||||||.!!!!!!!:||| !:!!||| leLeuThrLeuValPheGlnLeuTyrTrpLeuIlePheThrIleAlaAspAlaAsnLe 589372 : TTCTTACGTTAGTATTCCAACTTTACTGGCTGATATTTACCATAGCAGACGCGAATCT : 589316 213 : rLeuAspValLeuPheCysSerTrpLeuLeuPheAlaCysGluGlnLeuGlnHisLeu : 231 !|||||||||||||||||||||||||||||||||||||||||||||:!!||||||||| uLeuAspValLeuPheCysSerTrpLeuLeuPheAlaCysGluGlnIleGlnHisLeu 589315 : CCTAGACGTGCTGTTCTGTTCGTGGCTCCTCTTCGCTTGTGAACAAATTCAGCATCTA : 589259 232 : LysAlaIleMetLysProLeuMetGluLeuSerAlaThrLeuAspThrValValProA : 251 ||| !|||||||||||||||||||||!!!|||||||||||||||||||||||||||| LysAsnIleMetLysProLeuMetGluPheSerAlaThrLeuAspThrValValProA 589258 : AAGAATATCATGAAACCACTGATGGAATTCAGCGCGACCCTGGACACTGTTGTACCAA : 589199 252 : snSerGlyGluLeuPheLys >>>> Target Intron 3 >>>> AlaGly<-> : 260 |||||||||||||||||||| 1002 bp |||||| snSerGlyGluLeuPheLys++ ++AlaGlyAla 589198 : ACAGTGGAGAATTGTTTAAAgt.........................agGCCGGTGCG : 588170 261 : SerAlaAspHisLeuArgAspSerGln<-><-><->GlyValGlnProSerGlyAsnG : 276 !:! !|||||| !!:!|||..!.!. !!.! !||| ! !.!. AsnMetAspHisGlyLysAspGlnAspLeuProProProAlaThrProHisProGlnT 588169 : AACATGGATCACGGGAAGGATCAAGATCTACCACCGCCAGCCACGCCACATCCTCAAA : 588110 277 : lyAspAsnValLeuAspValAspLeuArgGlyIleTyrSerAsnArgGlnAspPheTh : 295 !||||||:!!||||||:!!||||||||||||||||||||||||||| !|||!:!|| hrAspAsnMetLeuAspMetAspLeuArgGlyIleTyrSerAsnArgThrAspTyrTh 588109 : CCGATAATATGCTGGACATGGATCTTCGAGGAATATACAGCAACAGGACAGATTACAC : 588053 296 : rAlaThrPheArgProThrAlaGlyThrThrPheAsnGlyGlyValGlyProAsnGly : 314 |.!!||||||||| !!|||||||||.!!|||||||||||||||||||||||||||||| rThrThrPheArgAlaThrAlaGlyAlaThrPheAsnGlyGlyValGlyProAsnGly 588052 : GACTACCTTCCGGGCAACTGCTGGCGCGACCTTTAACGGCGGTGTAGGACCAAATGGA : 587996 315 : LeuThrLysLysGlnGluMetLeuValArgSerAlaIleLysTyrTrpValGluArgH : 334 ||||||:!!||||||||||||||||||||||||||||||||||||||||||||||||| LeuThrGlnLysGlnGluMetLeuValArgSerAlaIleLysTyrTrpValGluArgH 587995 : TTGACACAGAAACAGGAGATGTTGGTCAGAAGTGCCATCAAATATTGGGTAGAGAGGC : 587936 335 : isLysHisValValArgLeuValThrSerValGlyAspAlaTyr : 348 ||||||||:!!||||||! !||| ! ! !! !|||...::: isLysHisIleValArg***ValHisValPhePheAspValPhe 587935 : ACAAACACATTGTCAGGTAAGTACATGTTTTCTTCGAtgttttc : 587892 vulgar: NvOr1 0 348 . KQ414731.1 591043 587891 - 1168 M 33 99 G 0 3 M 11 33 5 0 2 I 0 415 3 0 2 M 128 384 5 0 2 I 0 668 3 0 2 M 85 255 5 0 2 I 0 998 3 0 2 M 2 6 G 0 3 M 9 27 G 0 9 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414731.1 exonerate:protein2genome:local gene 587892 591043 1168 - . gene_id 1 ; sequence NvOr1 ; gene_orientation + KQ414731.1 exonerate:protein2genome:local cds 590909 591043 . - . KQ414731.1 exonerate:protein2genome:local exon 590909 591043 . - . insertions 3 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 590907 590908 . - . intron_id 1 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 590490 590908 . - . intron_id 1 KQ414731.1 exonerate:protein2genome:local splice3 590490 590491 . - . intron_id 0 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 590106 590489 . - . KQ414731.1 exonerate:protein2genome:local exon 590106 590489 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 590104 590105 . - . intron_id 2 ; splice_site "gt" KQ414731.1 exonerate:protein2genome:local intron 589434 590105 . - . intron_id 2 KQ414731.1 exonerate:protein2genome:local splice3 589434 589435 . - . intron_id 1 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 589179 589433 . - . KQ414731.1 exonerate:protein2genome:local exon 589179 589433 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 589177 589178 . - . intron_id 3 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 588177 589178 . - . intron_id 3 KQ414731.1 exonerate:protein2genome:local splice3 588177 588178 . - . intron_id 2 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 587892 588176 . - . KQ414731.1 exonerate:protein2genome:local exon 587892 588176 . - . insertions 12 ; deletions 0 KQ414731.1 exonerate:protein2genome:local similarity 587892 591043 1168 - . alignment_id 1 ; Query NvOr1 ; Align 591044 1 99 ; Align 590942 34 33 ; Align 590490 45 384 ; Align 589434 173 255 ; Align 588177 258 6 ; Align 588168 260 27 ; Align 588132 269 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr1 Target: KQ414731.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold204, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 595 Query range: 338 -> 475 Target range: 582363 -> 580207 339 : ArgLeuValThrSerValGlyAspAlaTyrGlyValAlaLeuLeuLeuHisMetLeuT : 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||. ArgLeuValThrSerValGlyAspAlaTyrGlyValAlaLeuLeuLeuHisMetLeuA 582363 : agATTGGTCACTTCAGTCGGTGATGCTTACGGTGTTGCTCTACTGCTGCACATGTTAG : 582306 359 : hrThrThrIleThrLeuThrLeuLeuAlaTyrGlnAlaThrLys >>>> Target : 373 !!|||||||||||||||||||||||||||||||||||||||||| 74 laThrThrIleThrLeuThrLeuLeuAlaTyrGlnAlaThrLys++ 582305 : CCACCACCATCACCTTAACTTTGCTTGCTTACCAAGCAACGAAGgt............ : 582259 374 : Intron 1 >>>> ValAsnGlyValAsnValTyrAlaAlaThrValIleGlyTyrL : 387 2 bp :!!:!!||||||:!!..!|||||||||:!!||||||||||||| ++IleHisGlyValAspThrTyrAlaAlaSerValIleGlyTyrL 582258 : .............agATACACGGTGTCGATACATACGCAGCATCGGTAATAGGCTACT : 581477 388 : euLeuTyrThrLeuGlyGlnValPheLeuPheCysIlePheGlyAsnArgLeuIleGl : 406 ||||||||:!!|||||||||||||||:!!.!!|||||||||||||||||||||||||| euLeuTyrSerLeuGlyGlnValPheMetLeuCysIlePheGlyAsnArgLeuIleGl 581476 : TGTTGTACTCCCTGGGACAAGTTTTCATGCTCTGCATATTTGGAAACCGTCTCATTGA : 581420 407 : uGlu >>>> Target Intron 2 >>>> SerSerSerValMetGluAlaAlaT : 416 |||| 533 bp ||||||||||||||||||||||||| uGlu++ ++SerSerSerValMetGluAlaAlaT 581419 : AGAGgt.........................agAGCTCATCTGTGATGGAAGCCGCTT : 580857 417 : yrSerCysHisTrpTyrAspGlySerGluGluAlaLysThrPheValGlnIleValCy : 435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| yrSerCysHisTrpTyrAspGlySerGluGluAlaLysThrPheValGlnIleValCy 580856 : ACTCTTGTCACTGGTACGACGGGTCAGAGGAGGCTAAGACTTTCGTACAAATCGTCTG : 580800 436 : sGlnGlnCysGlnLysAlaMetSerIleSerGlyAlaLysPhePheThrValSerLeu : 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| sGlnGlnCysGlnLysAlaMetSerIleSerGlyAlaLysPhePheThrValSerLeu 580799 : TCAACAGTGTCAAAAAGCGATGTCGATTTCAGGCGCGAAATTCTTCACCGTCTCTTTG : 580743 455 : AspLeuPheAlaSer >>>> Target Intron 3 >>>> ValLeuGlyAlaVa : 464 ||||||||||||||| 470 bp ||||||||||||:! AspLeuPheAlaSer++ ++ValLeuGlyAlaMe 580742 : GATCTTTTCGCTTCGgt.........................agGTGCTGGGAGCTAT : 580243 465 : lValThrTyrPheMetValLeuValGlnLeuLys : 475 !||||||||||||||||||||||||||||||||| tValThrTyrPheMetValLeuValGlnLeuLys 580242 : GGTCACATACTTCATGGTGTTGGTGCAACTGAAG : 580208 vulgar: NvOr1 338 475 . KQ414731.1 582363 580207 - 595 M 34 102 5 0 2 I 0 738 3 0 2 M 35 105 5 0 2 I 0 529 3 0 2 M 52 156 5 0 2 I 0 466 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414731.1 exonerate:protein2genome:local gene 580208 582363 595 - . gene_id 2 ; sequence NvOr1 ; gene_orientation + KQ414731.1 exonerate:protein2genome:local cds 582262 582363 . - . KQ414731.1 exonerate:protein2genome:local exon 582262 582363 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 582260 582261 . - . intron_id 1 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 581520 582261 . - . intron_id 1 KQ414731.1 exonerate:protein2genome:local splice3 581520 581521 . - . intron_id 0 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 581415 581519 . - . KQ414731.1 exonerate:protein2genome:local exon 581415 581519 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 581413 581414 . - . intron_id 2 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 580882 581414 . - . intron_id 2 KQ414731.1 exonerate:protein2genome:local splice3 580882 580883 . - . intron_id 1 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 580726 580881 . - . KQ414731.1 exonerate:protein2genome:local exon 580726 580881 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 580724 580725 . - . intron_id 3 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 580256 580725 . - . intron_id 3 KQ414731.1 exonerate:protein2genome:local splice3 580256 580257 . - . intron_id 2 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 580208 580255 . - . KQ414731.1 exonerate:protein2genome:local exon 580208 580255 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local similarity 580208 582363 595 - . alignment_id 2 ; Query NvOr1 ; Align 582364 339 102 ; Align 581520 373 105 ; Align 580882 408 156 ; Align 580256 460 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr511 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 122 -> 216 Target range: 33694 -> 33415 123 : PheThrIleLeuMetSerLeuSerGlyValPheSerSerIleThrMetCysLeuLeuPro : 142 |||::: ...::: !!:!|||||||||!!!! !|||! !.!. !!! ! !||| PheSerSerAsnPheThrAlaAsnGlyValPheCysTyrIleMetPheSerSerAlaPro 33694 : ttttcttcaaatttcacagCAAACGGAGTGTTTTGCTACATCATGTTCAGCTCGGCGCCT : 33637 143 : IlePheProArgIleLeuGlyIlePheMetSerIleAsnValSerGluGluHisPheMet : 162 .!!.!.|||!.!.!!:!!! !:!! :!!|||! !|||! !|||..!:!! !:!! PheIleProHisPheIleAspValAlaLeuSerLysAsnGluSerArgLysLeuSerLeu 33636 : TTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAACGAGTCACGAAAATTAAGTTTG : 33577 163 : IleHisIleProArgGluTyrPheIleAspGlnGluLysTyrTyrTyrCysIleLeuLeu : 182 !!::!! ||| ! ! ||| !|||||||||!::|||||||||||| :::::: ! MetTyr---ProAlaTyrTyrGlyIleAspGlnAspLysTyrTyrTyrTyrLeuMetAla 33576 : ATGTAC---CCTGCCTATTACGGCATTGACCAGGacaagtattattattatctaatgGCT : 33520 183 : HisMetAspValSerPhePheMetGlyAlaMetIleLeuValAlaThrGlyThrLeuIle : 202 |||||| !:!! !! ! !.!.:!!!!!:!!:!! !! !|||:!! ! HisMetMetSerAlaGlyAlaAlaValPhePheValPheMetSerCysAspThrIleTyr 33519 : CACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATGTCCTGCGACACGATTTAT : 33460 203 : PheSerCysIleLysTyrIleCysGlyLeuPheArgIleAla : 216 .!.!:! !:!!:!!:!! |||||||||!!. !|||:!! MetAsnIleValGlnHisAlaCysGlyLeuLeuPheIleSer 33459 : ATGAATATCGTTCAACACGCGTGCGGATTGTTGTTCATTTCC : 33416 vulgar: CbirOr511 122 216 . KQ414772.1 33694 33415 - 110 M 42 126 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33416 33694 110 - . gene_id 1 ; sequence CbirOr511 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33416 33694 . - . KQ414772.1 exonerate:protein2genome:local exon 33416 33694 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 33416 33694 110 - . alignment_id 1 ; Query CbirOr511 ; Align 33695 123 126 ; Align 33569 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr511 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 123 -> 216 Target range: 42751 -> 42475 124 : ThrIleLeuMetSerLeuSerGlyValPheSerSerIleThrMetCysLeuLeuProIle : 143 :::...:::...::::!!!!!|||:!!! !!!!! !! !! !.!. !! ! !||| ! SerPheIlePheThrValThrGlyIleCysCysPheThrMetPheIleSerAlaProTyr 42751 : tctttcattttcacagTAACTGGAATATGTTGCTTCACAATGTTTATCTCTGCGCCTTAT : 42694 144 : PheProArgIleLeuGlyIlePheMetSerIleAsnValSerGluGluHisPheMetIle : 163 .!.|||!.!:!!! !! !:!!.!.:!:|||! !|||! !|||..!:!! !.!.||| IleProHisValTyrAspValMetLeuSerLysAsnGluSerArgLysLeuGlyPheIle 42693 : ATACCGCATGTATATGATGTTATGTTATCGAAAAACGAGTCACGAAAGTTGGGTTTCATT : 42634 164 : HisIleProArgGluTyrPheIleAspGlnGluLysTyrTyrTyrCysIleLeuLeuHis : 183 :!! ||| ! ! ||| !:!!||||||!!:||||||||||||! !|||:!! !||| Tyr---ProAlaTyrTyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAlaHis 42633 : TAC---CCTGCCTATTATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCTCAC : 42577 184 : MetAspValSerPhePheMetGlyAlaMetIleLeuValAlaThrGlyThrLeuIlePhe : 203 ||| !.!! !!!.:!!! ! !.!.! !!!!:!!:!! !! !|||:!! !.!. MetThrSerGlyGlyLeuValValPhePheThrPheIleSerCysAspThrIleTyrMet 42576 : ATGACATCTGGGGGCTTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTACATG : 42517 204 : SerCysIleLysTyrIleCysGlyLeuPheArgIleAla : 216 !:! !:!::!!:!! |||||||||!!. !|||:!! AsnIleValGlnHisAlaCysGlyLeuLeuLeuIleSer 42516 : AATATCGTGCAACACGCGTGCGGATTGTTGTTGATTTCT : 42476 vulgar: CbirOr511 123 216 . KQ414772.1 42751 42475 - 105 M 41 123 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42476 42751 105 - . gene_id 2 ; sequence CbirOr511 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42476 42751 . - . KQ414772.1 exonerate:protein2genome:local exon 42476 42751 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 42476 42751 105 - . alignment_id 2 ; Query CbirOr511 ; Align 42752 124 123 ; Align 42629 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr515 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 137 -> 215 Target range: 26225 -> 25991 138 : PheAsnMetLeuSerPheMetProTyrPheLeuSerAlaIleLeuHisIleAsnGluSer : 157 |||! ||| !!|||:!! !! .!!|||..! !:!!:!!! :!:||||||!!! PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThr 26225 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACG : 26168 158 : AsnHisProMetGlnLeuPheLeuThrGluTyrPheValAspGluGluLysTyrPheTyr : 177 ... ! !:!! :!!!:!! !.!! ! |||||||||||||||!!:|||||| !||| ArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyr 26167 : CGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTAC : 26108 178 : LeuIleLeuLeuHisThrAsnValAlaPheSerIleGlyGlyThrAlaPheAlaAlaThr : 197 ||||||:!! !|||! ! !!:!!!.! ! !!!: ! !:!!!.!|||..!||| ! LeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCys 26107 : TTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGC : 26048 198 : GlyLeuMetLeuLeuSerTyrValGluHisSerCysGlyMetPheGlnIleAla : 215 ! ! !! ! !:!!! ! !|||:!!|||:!!||||||:!!!!. |||||| AspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla 26047 : GATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCA : 25992 vulgar: CbirOr515 137 215 . LHQN01017803.1 26225 25991 - 112 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25992 26225 112 - . gene_id 1 ; sequence CbirOr515 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25992 26225 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25992 26225 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25992 26225 112 - . alignment_id 1 ; Query CbirOr515 ; Align 26226 138 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr515 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 125 -> 223 Target range: 475503 -> 475980 126 : IlePheIlePheLeuLeuValCysTyrValIleSerPheAsnMetLeuSerPheMetP : 145 ||| !! ! ! |||:!! ! :!!.!!!!!.!.! :!!||| !||| ! IleValThrValLeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerS 475504 : attgtTACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGT : 475561 146 : roTyrPheLeuSerAlaIleLeuHisIleAsnGluSerAsnHisProMetGlnLeuPh : 164 !! ! .!!|||..!:!!:!:|||! !:!:|||||||||..!! ! ! !...|||.. erLysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIl 475562 : CTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAt : 475618 165 : eLeuThrGluTyrPheValAspGluGluLysTyrPheTyrLeuIleLeuLeuHisThr : 183 . |||||||||::::::|||:!!|||||||||||||||! !:!!:!!:!! ! eArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGln 475619 : acgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAG : 475675 184 : AsnValAlaPheSerIleGlyGlyThrAlaPheAlaAlaThrGlyLeuMetLeuLeuS : 203 !.!|||.!!.!! !:!: !||||||.!!!:!!.!||||||! ! !!!:!!! !! ThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrM 475676 : ACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCA : 475735 204 : erTyrValGluHisSerCysGlyMetPheGlnIleAla{Se} >>>> Target In : 216 !!:::!!:!!|||!!! ...:::|||:::|||...{||} 183 etTrpLeuGlnHisCysIleSerLeuPheGluIleVal{Se}++ 475736 : TGTGGTTGCAACATTGCATaagtttatttgaaattgtt{ag}gt.............. : 475778 217 : tron 1 >>>> {r}TyrArgLeuGluLysAlaLeu : 223 bp {|}||||||:!!|||||| !:!! ++{r}TyrArgIleGluLysLeuIle 475779 : ...........ag{t}TATCGTATTGAAAAACTGATT : 475980 vulgar: CbirOr515 125 223 . KQ414815.1 475503 475980 + 153 M 90 270 S 0 2 5 0 2 I 0 179 3 0 2 S 1 1 M 7 21 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475504 475980 153 + . gene_id 1 ; sequence CbirOr515 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 475504 475775 . + . KQ414815.1 exonerate:protein2genome:local exon 475504 475775 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 475776 475777 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 475776 475958 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 475957 475958 . + . intron_id 0 ; splice_site "ag" KQ414815.1 exonerate:protein2genome:local cds 475959 475980 . + . KQ414815.1 exonerate:protein2genome:local exon 475959 475980 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475504 475980 153 + . alignment_id 1 ; Query CbirOr515 ; Align 475504 126 270 ; Align 475960 217 21 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr515 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 330 -> 387 Target range: 458534 -> 458705 331 : LeuThrAlaTyrAsnValTyrTrpTyrLysAlaProIleArgIleGlnLysLeuIleL : 350 :!! ! !||| :!! ||||||:::||||||:!!||||||||||||! !:!!| IleArgArgTyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuL 458535 : ATTCGTAGATACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCT : 458592 351 : euPheLeuIleGluArgSerThrLysSerPheAsnLeuArgValValGlyValLeuVa : 369 |||||:!! !|||||||||! !!:! ! !::!||| !!:!! !|||:!!:!!:! euPheIleSerGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIl 458593 : TGTTCATATCAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCAT : 458649 370 : lAlaSerIleGluArgPheAlaSerLeuMetLysThrSerIleSerTyrPheThr : 387 !||||||...||| ||||||:!!:!!! |||:!!!!!::: :::|||::: eAlaSerPheGluPhePheAlaThrValThrLysSerTrpLeu***HisPheSer 458650 : TGCatccttcgaatttttcgccaCGGTAACAAAATCTTGGCtatgacatttttct : 458705 vulgar: CbirOr515 330 387 . KQ414815.1 458534 458705 + 123 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458535 458705 123 + . gene_id 2 ; sequence CbirOr515 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 458535 458705 . + . KQ414815.1 exonerate:protein2genome:local exon 458535 458705 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458535 458705 123 + . alignment_id 2 ; Query CbirOr515 ; Align 458535 331 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr515 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 156 -> 223 Target range: 478611 -> 478812 157 : SerAsnHisProMetGlnLeuPheLeuThrGluTyrPheValAspGluGluLysTyrP : 176 ...||| ...:!! ! !||||||||||||:!!||||||:::||||||| GlyAsnPheGluThrSerMetGlyThrThrGluTyrPheIleAspGluLysLysTyrP 478612 : ggaaattttgaaacatcaATGGGCACCACGGAATACTTCATTGacgagaagaaatatt : 478669 177 : heTyrLeuIleLeuLeuHisThrAsnValAlaPheSerIleGlyGlyThrAlaPheAl : 195 || ...|||::: |||..! !!:!!:!!!!.! !!!: !!.!|||!.!!:!!. heIlePheIleIleSerHisValTyrLeuSerLeuIleMetHisAlaThrValTyrVa 478670 : tcatatttattatttctcacGTGTACCTGTCGTTGATAATGCATGCAACTGTATACGT : 478726 196 : aAlaThrGlyLeuMetLeuLeuSerTyrValGluHisSerCysGlyMetPheGlnIle : 214 !||||||! !! ! :!!:!!! !!:::!!! !|||!!! !|||:!!!:!.!.||| lAlaThrGluSer***ValIleMetTrpMetValHisThrIleGlyLeuTyrAsnIle 478727 : AGCCACCGAGTCGTGAGTGATTATGTGGATGGTGCATACTATCGGCTTGTATAATATC : 478783 215 : AlaSerTyrArgLeuGluLysAlaLeu : 223 !!!!|||!.!! !:!!!:! !:!! IleArgTyrAsnGlnGlnArgLeuIle 478784 : ATAAGGTATAATCAGCAAAGATTGATC : 478812 vulgar: CbirOr515 156 223 . KQ414815.1 478611 478812 + 108 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478612 478812 108 + . gene_id 3 ; sequence CbirOr515 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478612 478812 . + . KQ414815.1 exonerate:protein2genome:local exon 478612 478812 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478612 478812 108 + . alignment_id 3 ; Query CbirOr515 ; Align 478612 157 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr498 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 123 -> 212 Target range: 485659 -> 485926 124 : IleLeuIleIleLeuLeuIleGlySerIlePheLeuPheIleLeuSerGlnValCysP : 143 |||:!! !:!!:!!:!! ! !|||:!!.!!:!!.!.||||||.!! ! !! ! IleIleAlaValIleIleGlyProSerLeuLeuValLeuIleLeuGlyIlePheAsnA 485660 : ATTATTGCAGTAATTATCGGTCCATCGTTACTTGTGCTGATTCTTGGTATATTTAACA : 485717 144 : roAsnIlePheAspIleIleLeuProIleAsnLysSerArgHisTyrArgMetGlnPh : 162 !!:!|||.!.||||||:!::!!|||:!:||| ! !!!|||! ! !!!:! .! snSerIleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIl 485718 : ACAGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTAT : 485774 163 : eIleValGluTyrPheIleAspGlnLysLysTyrPhePhePheLeuLeuLeuHisMet : 181 .! ! !|||:!!|||:!!||||||:!!|||||||||!:! !:!! ! !|||:!: eAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisVal 485775 : AAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTT : 485831 182 : AspThrAlaPheLeuLeuAlaGlyIleValThrLeuAlaIleGlyLeuLeuIleMetG : 201 ! ! ! ! !!:!!:!!!.!!.!|||||| !|||::! :::|||||||||. ValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetA 485832 : GTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatgg : 485891 202 : lyTyrIleGlnTyrIleCysGlyIlePheAsnIle : 212 .! ||||||:!!! !||||||:!:!:!!..||| laIleIleGlnHisThrCysGlyLeuTyrThrIle 485892 : CGATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr498 123 212 . KQ414815.1 485659 485926 + 148 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485660 485926 148 + . gene_id 1 ; sequence CbirOr498 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485660 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485660 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485660 485926 148 + . alignment_id 1 ; Query CbirOr498 ; Align 485660 124 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr498 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 124 -> 212 Target range: 481971 -> 482235 125 : LeuIleIleLeuLeuIleGlySerIlePheLeuPheIleLeuSerGlnValCysProA : 144 ::: |||:!! ! !|||:!:!!.:!!.!.||||||!!!!!.:!!! ! IleThrAlaLeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerP 481972 : attacagcGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTT : 482029 145 : snIlePheAspIleIleLeuProIleAsnLysSerArgHisTyrArgMetGlnPheIl : 163 !:!!.!.|||:!!|||:!!|||:!!|||:!!!!!||| :!!!:!.!.! ! ! heValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSe 482030 : TCGTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATC : 482086 164 : eValGluTyrPheIleAspGlnLysLysTyrPhePhePheLeuLeuLeuHisMetAsp : 182 !:!!||||||||||||||||||:!!||||||! .!!|||:!! !!!!|||..! rMetGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrp 482087 : AATGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGG : 482143 183 : ThrAlaPheLeuLeuAlaGlyIleValThrLeuAlaIleGlyLeuLeuIleMetGlyT : 202 !:!!||||||:!!!.!!.!! :!!! !:!!!.!|||! ! !||||||:!: !! PheSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetT 482144 : TTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGT : 482203 203 : yrIleGlnTyrIleCysGlyIlePheAsnIle : 212 :::!!:!!:!! !....!!:!:|||!.!:!! rpLeuGluHisAlaAlaSerLeuPheThrLeu 482204 : GGCTTGAACACGCTGCAAGCTTGTTCACCCTT : 482235 vulgar: CbirOr498 124 212 . KQ414815.1 481971 482235 + 143 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481972 482235 143 + . gene_id 2 ; sequence CbirOr498 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481972 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481972 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481972 482235 143 + . alignment_id 2 ; Query CbirOr498 ; Align 481972 125 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr507 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 140 -> 255 Target range: 457192 -> 457834 141 : GlnIleAlaValAlaPheSerAspValValLeuProIleAsnGluSerArgLeuProA : 160 |||:!! ! ! !!!. !|||:!!|||:!!|||:!:||||||||||||! ! !. GlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysG 457193 : CAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTG : 457250 161 : rgLeuGlnLysThrThrGluTyrIleIleGlyGluGlnAsnPhePheProLeuIleLe : 179 .!||| ! |||.!!||||||.!!:!!! ! !:!!!!.!:!.!.! !! !|||:! luLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIl 457251 : AGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCAT : 457307 180 : uProHisIleAspThrAlaMetIleIleGlyValIleSerTrpIleAlaMetGlyThr : 198 ! !!|||||| !|||..!:!::!:|||!.!!.!! !!!!! ! !|||! ! !:!! eAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSer 457308 : CGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCC : 457364 199 : LeuMetIleAlaTyrLeuGlnHisThrCysGlyMetPheLysIleAla{Cy} >>>> : 215 |||:!:|||.!! !!:!!! !|||..!||||||:!!||||||:!!.!!{ !} LeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeuThr{Se}++ 457365 : TTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTTACT{AG}gt.... : 457419 216 : Target Intron 1 >>>> {s}TyrArgIleGluAsnAlaMetGluIleAsnIl : 226 303 bp {!}||||||:!!|||:!!:!!:!!!!: ++{r}TyrArgLeuGluHisSerLeuAsp------Hi 457420 : .....................ag{C}TATAGATTAGAACACTCTTTGGAC------CA : 457745 227 : eProLysAsnSerAsnLeuLysIleGlyArgProIleSerGluLysIleIleTyrAla : 245 ! !! :::..!!!.||| !! ! !!:! !! ! !! !!:!:!:||| ! ||| sValThrSerGlnLysLeuGlySerThrLysArgThrTyrValArgLeuIleGluAla 457746 : CGTTACCTCACAAAAATTGGGAAGTACCAAGAGAACGTACGTGAGGCTGATTGAAGCT : 457802 246 : ValAsnIleHisArgGluAlaMetLysLeu : 255 |||||||||||||||:!!||| :!!||| ValAsnIleHisArgLysAlaTyrGluLeu 457803 : GTTAACATACACAGAAAAGCTTACGAGTTG : 457834 vulgar: CbirOr507 140 255 . KQ414815.1 457192 457834 + 143 M 74 222 S 0 2 5 0 2 I 0 299 3 0 2 S 1 1 M 8 24 G 2 0 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457193 457834 143 + . gene_id 1 ; sequence CbirOr507 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 457193 457416 . + . KQ414815.1 exonerate:protein2genome:local exon 457193 457416 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 457417 457418 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 457417 457719 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457718 457719 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457720 457834 . + . KQ414815.1 exonerate:protein2genome:local exon 457720 457834 . + . insertions 0 ; deletions 2 KQ414815.1 exonerate:protein2genome:local similarity 457193 457834 143 + . alignment_id 1 ; Query CbirOr507 ; Align 457193 141 222 ; Align 457721 216 24 ; Align 457745 226 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr507 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 147 -> 213 Target range: 485728 -> 485926 148 : AspValValLeuProIleAsnGluSerArgLeuProArgLeuGlnLysThrThrGluT : 167 |||:!!:!!:!!|||:!:||| ! !!!|||! !! !! !:!!! ! !!.!:!!|||: AspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnSerGluH 485729 : GACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACTCGGAAC : 485786 168 : yrIleIleGlyGluGlnAsnPhePheProLeuIleLeuProHisIleAspThrAlaMe : 186 !!.!!:!!! !:!!|||!!.!:!||| !! !||| ! !!|||:!!! ! ! !:! isPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLeuPheVa 485787 : ATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCTCTTCGT : 485843 187 : tIleIleGlyValIleSerTrpIleAlaMetGlyThrLeuMetIleAlaTyrLeuGln : 205 :|||||||||!.!||| !! :!!::! |||::::::||| :!!||| lIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIleIleGln 485844 : CATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATAATACAG : 485900 206 : HisThrCysGlyMetPheLysIle : 213 ||||||||||||:!!!:!! !||| HisThrCysGlyLeuTyrThrIle 485901 : CACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr507 147 213 . KQ414815.1 485728 485926 + 116 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485729 485926 116 + . gene_id 2 ; sequence CbirOr507 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485729 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485729 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485729 485926 116 + . alignment_id 2 ; Query CbirOr507 ; Align 485729 148 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr507 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 135 -> 222 Target range: 448061 -> 448322 136 : AlaPhePheLeuSerGlnIleAlaValAlaPheSerAspValValLeuProIleAsnG : 155 ::!||| !||| !:!!.!!!.!||| ||| |||:::::::!!|||!!:|||! SerPheThrLeuValGluPheValValHisPheLeuAspIleLeuMetProMetAsnV 448062 : AGCTTTACCTTGGTTGAGTTCGTGGTAcattttctcgatattttaATGCCAATGAACG : 448119 156 : luSerArgLeuProArgLeuGlnLysThrThrGluTyrIleIleGlyGluGlnAsnPh : 174 !|||! !! !! !..!|||! !! !:!!! !.!! !! !:!!.!.!!.|| alSerThrArgHisGluLeuProPheLeuIleGlnCysPheCysAspGlnAspLysPh 448120 : TATCTACACGGCACGAGCTACCCTTCCTAATTCAATGTTTCTGTGATCAAGATAAATT : 448176 175 : ePheProLeuIleLeuProHisIleAspThrAlaMetIleIleGlyValIleSerTrp : 193 ||||! !! !|||||| ! !:!: !..! !! |||:!:|||! !! ! ! ePheHisTyrIleLeuValPheLeuIleValLeuThrIleLeuGlyGlySerValVal 448177 : CTTCCACTATATATTAGTTTTCTTGATCGTTCTCACTATTTTGGGTGGAAGTGTGGTA : 448233 194 : IleAlaMetGlyThrLeuMetIleAlaTyrLeuGlnHisThrCysGlyMetPheLysI : 213 :!!|||! !||| ! :!: !!:! !|||||| !||||||:!!||||||| LeuAlaThrThrThrThrTyrLeuIlePheSerGlnHisCysCysGlyLeuPheLysI 448234 : TTAGCCACTACAACGACTTACTTGATATTCAGTCAACATTGTTGTGGATTGTTCAAAA : 448293 214 : leAlaCysTyrArgIleGluAsnAlaMet : 222 ||||| ! !! ..!||| !!.!|||||| leAlaGly***GluIleMetThrAlaMet 448294 : TTGCAGGGTAAGAAATTATGACTGCTATG : 448322 vulgar: CbirOr507 135 222 . KQ414815.1 448061 448322 + 109 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448062 448322 109 + . gene_id 3 ; sequence CbirOr507 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448062 448322 . + . KQ414815.1 exonerate:protein2genome:local exon 448062 448322 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448062 448322 109 + . alignment_id 3 ; Query CbirOr507 ; Align 448062 136 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr501PI Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 212 Query range: 129 -> 347 Target range: 457165 -> 458705 130 : CysAsnGlnSerValIleIleAlaMetGlnCysTrpProTyrIlePheAspValIleM : 149 |||..! ! !||||||! !.!!:!!||| !!::||| :!!.!!|||:!!:!:: CysGlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValV 457166 : TGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGG : 457223 150 : etProLysAsnGlyThrTyrValGlyArgLeuValAlaValValSerLysTyrPheAl : 168 !:||| !|||! !:!! ! ! !!..!||| ! :!!..!:!!:!!||||||!. alProLeuAsnGluSerArgProCysGluLeuTyr---LeuThrAlaGluTyrPheVa 457224 : TCCCATTGAACGAATCACGCCCCTGTGAGTTATAC---CTTACAGCGGAATACTTTGT : 457277 169 : aValGlnGluLysTyrSerTyrLeuLeuLeuLeuHisValAsnIleThrSerThrVal : 187 !! !..!:!!||||||! !:!!! !:!!:!! !|||:!!! !! ! ! !:!! lAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIle 457278 : CGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATC : 457334 188 : GlySerPheValLeuLeuAlaIleGlyThrMetIleLeuSerTyrValLysHisIleC : 207 !.!:!! !..!||| !|||! !! !:!!:!::!!:!!!!! !!||| !|||:!!| AlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValC 457335 : GCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTT : 457394 208 : ysGlyMetPheArgIleAlaArgPheAlaLysPheLeuIleSerSerMetAsnArgSe : 226 |||||:!!|||!:!:!!.!!|||! ||| ! !! !.!!!.!|||! ... .. ysGlyLeuPheLysLeuThrArg***AlaPheCysProPheLysSerThrGlnLeuGl 457395 : GTGGATTGTTCAAGCTTACTAGGTGAGCTTTCTGTCCCTTTAAATCGACtcaattgca : 457451 227 : rLeuPhePheValIleMetIleTyrValLeuCysValSerPheAsnLeuTyrGlyIle : 245 . ||| :::||| ::: ... |||... !! .!! ! n***Phe***IleIleThrVal***PhePheLeuAsnPhePheThrHisLeuSerSer 457452 : ataattttgaattataactgtctaattttttctgaatttttttactcATTTAAGTTCT : 457508 246 : PheHisAsnGluProAlaValGlnGluIleGluGlnThrLeuValHisLeuIleIleI : 265 ! ! !.!. !! !! ||||||... :!!|||.!. !.!!! ! CysPheGlnPheAlaAsnGluTyrGluIleSerPhePheValValGluThrPheLysS 457509 : TGCTTTCAATTTGCAAATGaatatgaaatatcttttttcgTTGTTGAAACATTCAAAT : 457568 266 : leGlyPheValPheAlaTyr >>>> Target Intron 1 >>>> MetPheIle : 274 ! !! ! !!:!! !!:! 585 bp ! |||:!: erGlnCysSerTyrAspPhe++ +-ThrPheLeu 457569 : CACAATGTTCCTATGATTTTgt.........................acACATTTCTG : 458180 275 : AlaAsnTyrValGlyGlnGluIleMetAspTyrAsnAsnHisValPheLeuThr{Va} : 293 |||||||||!.!|||||| :!:||||||:!!!:!! ! !!|||||| !! !{..} AlaAsnTyrAlaGlyGlnIleValMetAspHisSerIleAspValPheAspLys{Th} 458181 : GCGAACTATGCCGGGCAAATCGTGATGGATCACAGTATCGACGTTTTCGATAAA{AC} : 458237 294 : >>>> Target Intron 2 >>>> {l}TyrAsnAlaProTrpTyrLeuAlaPr : 302 304 bp {!}||| !|||||||||! !||||| ++ ++{r}TyrLeuIleProTrpTyrArgAlaPr 458238 : gt.........................ag{A}TACTTGATTCCATGGTACCGTGCTCC : 458568 303 : oLeuGlnIleGlnLysLeuIleLeuIleLeuLeuGlnArgSerAsnLysAlaPheThr : 321 ||||!:!|||||||||! !:!!|||.!!:!!! !:!!||||||!!.!:!!.! !:!! oLeuArgIleGlnLysTyrLeuLeuPheIleSerGluArgSerLysArgValSerSer 458569 : ATTACGAATACAAAAGTATCTCTTGTTCATATCAGAACGCAGCAAAAGAGTGAGTTCC : 458625 322 : LeuSerIleValGlyLeuPheThrIleSerLeuGluCysPheAlaSerLeuAlaSerT : 341 |||!!!!!: !|||:!!.!!! ! |||...||| ||||||:!!:!!.!!!.!: LeuCysMetTyrGlyMetIleIleAlaSerPheGluPhePheAlaThrValThrLysS 458626 : TTGTGCATGTATGGCATGATCATTGCatccttcgaatttttcgccaCGGTAACAAAAT : 458685 342 : hrSerIleSerTyrPheThr : 347 !!!!!::: :::|||::: erTrpLeu***HisPheSer 458686 : CTTGGCtatgacatttttct : 458705 vulgar: CbirOr501PI 129 347 . KQ414815.1 457165 458705 + 212 M 31 93 G 1 0 M 110 330 5 0 2 I 0 581 3 0 2 M 21 63 S 0 2 5 0 2 I 0 300 3 0 2 S 1 1 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457166 458705 212 + . gene_id 1 ; sequence CbirOr501PI ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 457166 457588 . + . KQ414815.1 exonerate:protein2genome:local exon 457166 457588 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local splice5 457589 457590 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 457589 458173 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 458172 458173 . + . intron_id 0 ; splice_site "AC" KQ414815.1 exonerate:protein2genome:local cds 458174 458238 . + . KQ414815.1 exonerate:protein2genome:local exon 458174 458238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 458239 458240 . + . intron_id 2 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 458239 458542 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 458541 458542 . + . intron_id 1 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458543 458705 . + . KQ414815.1 exonerate:protein2genome:local exon 458543 458705 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457166 458705 212 + . alignment_id 1 ; Query CbirOr501PI ; Align 457166 130 93 ; Align 457259 162 330 ; Align 458174 272 63 ; Align 458544 294 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr514 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 308 -> 381 Target range: 458164 -> 458687 309 : PheIleTyrMetPheIleAlaAsnTyrAlaGlyGlnGluIleThrAspCysAsnAsnH : 328 |||:!!|||! |||:!:|||||||||||||||||| :!:! !||| !!:!! ! PheLeuTyrThrPheLeuAlaAsnTyrAlaGlyGlnIleValMetAspHisSerIleA 458165 : TTCCTTTACACATTTCTGGCGAACTATGCCGGGCAAATCGTGATGGATCACAGTATCG : 458222 329 : isIlePhePheThr{Le} >>>> Target Intron 1 >>>> {u}TrpAsnAl : 336 !!:!!||| !! !{ } 304 bp {!}!:: spValPheAspLys{Th}++ ++{r}TyrLeuIl 458223 : ACGTTTTCGATAAA{AC}gt.........................ag{A}TACTTGAT : 458550 337 : aProTrpTyrLeuAlaProLeuGlnIleGlnLysValIleLeuPheLeuLeuGlnArg : 355 !|||||||||! !|||||||||!:!||||||||| !:!!||||||:!!! !:!!||| eProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleSerGluArg 458551 : TCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATATCAGAACGC : 458607 356 : SerAsnLysAlaPheThrLeuAsnIleGlyGlyLeuPheThrLeuSerIleGlnSerP : 375 |||!!.!:!!.! !:!!||| !!!: !|||:!!.!!! ! |||...::: | SerLysArgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPheGluPheP 458608 : AGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatccttcgaatttt : 458667 376 : heAlaSerLeuValSerSer : 381 |||||:!!:!!..!!.!||| heAlaThrValThrLysSer 458668 : tcgccaCGGTAACAAAATCT : 458687 vulgar: CbirOr514 308 381 . KQ414815.1 458164 458687 + 141 M 24 72 S 0 2 5 0 2 I 0 300 3 0 2 S 1 1 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458165 458687 141 + . gene_id 1 ; sequence CbirOr514 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 458165 458238 . + . KQ414815.1 exonerate:protein2genome:local exon 458165 458238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 458239 458240 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 458239 458542 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 458541 458542 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458543 458687 . + . KQ414815.1 exonerate:protein2genome:local exon 458543 458687 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458165 458687 141 + . alignment_id 1 ; Query CbirOr514 ; Align 458165 309 72 ; Align 458544 334 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr505PSE(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 123 -> 213 Target range: 457144 -> 457411 124 : IleLeuThrLeuPheThrValCysCysLeuIleIleIleThrIleLeuProPheLeuP : 143 !!::!!|||:!!! !||| !||| !! !:!::!!||||||! |||! !.!!!!!| MetIleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheP 457145 : ATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTC : 457202 144 : roTrpIlePheGlyThrPheLeuLeuAlaAsnGluSerArgProLeuHisAsnMetLe : 162 || :!!.!!! !! ! ! :!!! ! !|||||||||||||||! ! .!.:!:! roIleLeuLeuAspIleValValProLeuAsnGluSerArgProCys---GluLeuTy 457203 : CGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGT---GAGTTATA : 457256 163 : uIleValThrGluTyrPheValAspLysGluLysIleValTyrLeuIleLeuLeuHis : 181 !:!!..!.!!|||||||||||||||! !:!!||| !:!!:!!! !|||:!! !||| rLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHis 457257 : CCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCAC : 457313 182 : ThrTyrAlaSerIleTyrIleGlyValThrAlaLeuValGlyGlyGlyMetMetLeuM : 201 ! ! !.!!!!!:!! |||!.!!.!|||.!!|||..!!.!..!! ! :!:|||! IleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuI 457314 : ATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTA : 457373 202 : etAlaTyrLeuLysHisIleCysGlyLeuPheSerIle : 213 !:.!! !!:!! !|||:!!||||||||||||!.!:!! leThrAsnValLeuHisValCysGlyLeuPheLysLeu 457374 : TAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr505PSE(F) 123 213 . KQ414815.1 457144 457411 + 140 M 35 105 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457145 457411 140 + . gene_id 1 ; sequence CbirOr505PSE(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457145 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457145 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457145 457411 140 + . alignment_id 1 ; Query CbirOr505PSE(F) ; Align 457145 124 105 ; Align 457250 160 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr505PSE(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 334 -> 375 Target range: 490203 -> 490326 335 : AsnIleGluTrpTyrThrAlaProIleCysIleGlnArgLeuIleLeuPheLeuLeuG : 354 !:!:!:.!.||||||||||||||||||..!||||||!:!|||:!:|||.!!:!!:!!| SerValAsnTrpTyrThrAlaProIleAlaIleGlnLysLeuLeuLeuIleIleMetG 490204 : AGCGTGAATTGGTACACGGCTCCAATTGCCATACAAAAATTGCTGTTGATCATTATGC : 490261 355 : lnArgSerCysLysAlaTyrGlyLeuLysIleAlaGlyLeuPheIleAlaSerLeuGl : 373 ||!.!!!! ::! !! !..!:!!! !:!! !|||:!!!:!|||:!!|||!!!!! lnAsnThrIleArgAsnSerSerIleThrLeuPheGlyMetTyrIleSerSerPheAs 490262 : AAAATACTATACGAAATTCTTCAATAACACTCTTCGGAATGTATATATCGTCTTTCGA : 490318 374 : uGlyPhe : 375 :|||||| pGlyPhe 490319 : TGGTTTC : 490326 vulgar: CbirOr505PSE(F) 334 375 . KQ414815.1 490203 490326 + 105 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 490204 490326 105 + . gene_id 2 ; sequence CbirOr505PSE(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 490204 490326 . + . KQ414815.1 exonerate:protein2genome:local exon 490204 490326 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 490204 490326 105 + . alignment_id 2 ; Query CbirOr505PSE(F) ; Align 490204 335 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr505PSE(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 163 -> 254 Target range: 478635 -> 479212 164 : ValThrGluTyrPheValAspLysGluLysIleValTyrLeuIleLeuLeuHisThrT : 183 ..!||||||||||||:!!|||::::::||| ...|||::: |||..!| ThrThrGluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValT 478636 : ACCACGGAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGT : 478693 184 : yrAlaSerIleTyrIleGlyValThrAlaLeuValGlyGlyGlyMetMetLeuMetAl : 202 || !|||:!: !!: !!.!|||!.!! !|||!.! !! ! ! :!!!!: yrLeuSerLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMe 478694 : ACCTGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTAT : 478750 203 : aTyrLeuLysHisIleCysGlyLeuPheSerIleAlaSerTyrArgMet >>>> Ta : 219 !!:::!! !|||! ! !||||||!:!!:!||| !!!!|||!.!..! tTrpMetValHisThrIleGlyLeuTyrAsnIleIleArgTyrAsnGln-- 478751 : GTGGATGGTGCATACTATCGGCTTGTATAATATCATAAGGTATAATCAGca....... : 478803 220 : rget Intron 1 >>>> GluGlnThrIleMetLeuAsnThrHisGluGluAlaAs : 231 304 bp ... ! !|||... !! !..!!.!:!!!!: !|| +-SerTyrArgIleGlnLysIleValArgLysAspLeuAs 478804 : ..................acAGTTATCGAATTCAAAAAATCGTTCGTAAGGACTTGAA : 479141 232 : nArgArgAsnGluMetGluMetAsnLysLysLeuArgHisAlaValAspValHisArg : 250 |!!!||| .!.! !.!.!!:!!.||| :!!! !||||||:!!! !..!|||||| nSerArgLeuAsnThrAsnIleLysLysGlyValIleHisAlaIleAlaThrHisArg 479142 : CAGTCGTTTGAATACGAACATTAAAAAAGGTGTGATACATGCCATAGCTACTCATAGA : 479198 251 : ThrAlaIleGlu : 254 |||||||||:!! ThrAlaIleGln 479199 : ACAGCAATACAG : 479212 vulgar: CbirOr505PSE(F) 163 254 . KQ414815.1 478635 479212 + 103 M 55 165 5 0 2 I 0 300 3 0 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478636 479212 103 + . gene_id 3 ; sequence CbirOr505PSE(F) ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 478636 478800 . + . KQ414815.1 exonerate:protein2genome:local exon 478636 478800 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 478801 478802 . + . intron_id 1 ; splice_site "CA" KQ414815.1 exonerate:protein2genome:local intron 478801 479104 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 479103 479104 . + . intron_id 0 ; splice_site "AC" KQ414815.1 exonerate:protein2genome:local cds 479105 479212 . + . KQ414815.1 exonerate:protein2genome:local exon 479105 479212 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478636 479212 103 + . alignment_id 3 ; Query CbirOr505PSE(F) ; Align 478636 164 165 ; Align 479105 219 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr513PSE(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 123 -> 211 Target range: 475509 -> 475770 124 : ThrLeuLeuThrIleCysGlyLeuPheIleLeuThrLeuLeuProLeuLeuProArgI : 143 |||:!!|||..! ! !:!!|||! !:!!! !||||||! !!!!! ! !!!:!| ThrValLeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerSerLysI 475510 : ACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGTCTAAGA : 475567 144 : lePheAspIlePhePhePheValAsnGluSerGluProTyrArgAsnIleTyrIleAr : 162 ||.!!||| !!!.!!. !:!!|||||||||...||| ! !!::!:!: ||||| leLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeu---IleAr 475568 : TCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTG---Atacg : 475621 163 : gThrGluTyrPheValAspGluGluLysTyrPheTyrPheIleLeuLeuHisLeuTyr : 181 | |||||||||::::::|||:!!||||||||||||.!.! !:!!:!!:!!! ! ! gIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThr 475622 : aatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACT : 475678 182 : AlaAlaGlnTyrIleAlaGlyAlaThrLeuLeuGlyArgAlaIleValIleThrGlyT : 201 !.!.!! !:!: !|||.!!|||! !:!!!.!! !! ! !:!!.!!||| !! ValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetT 475679 : GTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGT : 475738 202 : yrGlyIleTyrSerCysGlyLeuPheAsnIle : 211 :: ! !:!!!!! ...||||||...||| rpLeuGlnHisCysIleSerLeuPheGluIle 475739 : GGTTGCAACATTGCATaagtttatttgaaatt : 475770 vulgar: CbirOr513PSE(F) 123 211 . KQ414815.1 475509 475770 + 102 M 36 108 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475510 475770 102 + . gene_id 1 ; sequence CbirOr513PSE(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475510 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475510 475770 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 475510 475770 102 + . alignment_id 1 ; Query CbirOr513PSE(F) ; Align 475510 124 108 ; Align 475618 161 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr513PSE(F) Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 162 -> 214 Target range: 478638 -> 478794 163 : ThrGluTyrPheValAspGluGluLysTyrPheTyrPheIleLeuLeuHisLeuTyrA : 182 ||||||||||||:!!||||||:::||||||||| ||||||::: |||:!!||| ThrGluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValTyrL 478639 : ACGGAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGTACC : 478696 183 : laAlaGlnTyrIleAlaGlyAlaThrLeuLeuGlyArgAlaIleValIleThrGlyTy : 201 !:!! ! !!: !!.!.!!..!! !:!!!.!! !! ! !:!:! ! !!: euSerLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMetTr 478697 : TGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTATGTG : 478753 202 : rGlyIleTyrSerCysGlyLeuPheAsnIleAlaSerTyr : 214 : !:!::!!!!! !||||||!:!|||||| !!!!||| pMetValHisThrIleGlyLeuTyrAsnIleIleArgTyr 478754 : GATGGTGCATACTATCGGCTTGTATAATATCATAAGGTAT : 478794 vulgar: CbirOr513PSE(F) 162 214 . KQ414815.1 478638 478794 + 100 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478639 478794 100 + . gene_id 2 ; sequence CbirOr513PSE(F) ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478639 478794 . + . KQ414815.1 exonerate:protein2genome:local exon 478639 478794 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478639 478794 100 + . alignment_id 2 ; Query CbirOr513PSE(F) ; Align 478639 163 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr504 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 106 -> 194 Target range: 471416 -> 471756 107 : GluLeuGluIleMetLysGlnTyrAlaSerThrSerLysLeuTyrValValThrPheI : 126 ||||||||||||:!!|||:!!:!!||||||! !.!!|||! !!:! !:!!! !! !| GluLeuGluIleLeuLysGluHisAlaSerMetGlyLysArgPheSerIleIleCysI 471417 : GAGCTGGAAATATTGAAGGAACACGCGTCTATGGGGAAACGTTTCTCGATTATTTGCA : 471474 127 : le{S} >>>> Target Intron 1 >>>> {er}PheAlaValAlaThrIleCy : 134 ||{.} 73 bp {!!}||| ! !.!!!.!:!! le{G}++ ++{ly}PheTyrTyrThrAsnLeuLe 471475 : TC{G}gt.........................ag{GT}TTCTATTACACGAATCTACT : 471571 135 : sIleTyrAla<->PheLeuGlnLeuLeuProAlaIleLeuAspPheIleIleProLeu : 152 !||| !::! .!.|||...:!!! !||| !|||||||||.!!|||||||||||| uIleThrSerValIleLeuSerMetSerProLeuIleLeuAspIleIleIleProLeu 471572 : CATTACTAGTGTAATACTGTCCATGTCGCCTCTTATTCTCGATATTATAATACCTCTG : 471628 153 : AsnIleSerArgProArgTyrLeuTyrValArgPheGluPheSerIleAspGluGluL : 172 |||! |||||||||||||||!!! !!! !|||!!:|||! ! !:!!:!!|||: AsnThrSerArgProArgTyrPheProPheThrPheAspPheIleProAsnGlnGluG 471629 : AACACGTCACGTCCACGTTACTTTCCATTTACGTTCGATTTCATTCCCAATCAAGAGG : 471688 173 : ysHisPheTyrAlaIleThrPheTyrThrValValSerLeuPheValAlaSerAlaTh : 191 !!:!!|||!! !!||||||.!!!:!:!!! !:!!! !! !.!! !!.!! !|||.! luTyrPhe***ProIleThrIlePheSerGlyIleLeuCysIleCysGlyLeuAlaAl 471689 : AATACTTCTAACCGATTACTATCTTTTCTGGCATATTGTGCATTTGTGGATTAGCAGC : 471745 192 : rValIleSer : 194 !:!!|||||| aMetIleSer 471746 : AATGATAAGT : 471756 vulgar: CbirOr504 106 194 . KQ414815.1 471416 471756 + 123 M 20 60 S 0 1 5 0 2 I 0 69 3 0 2 S 1 2 M 10 30 G 0 3 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471417 471756 123 + . gene_id 1 ; sequence CbirOr504 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 471417 471477 . + . KQ414815.1 exonerate:protein2genome:local exon 471417 471477 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 471478 471479 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 471478 471550 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 471549 471550 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 471551 471756 . + . KQ414815.1 exonerate:protein2genome:local exon 471551 471756 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471417 471756 123 + . alignment_id 1 ; Query CbirOr504 ; Align 471417 107 60 ; Align 471553 128 30 ; Align 471586 138 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr504 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 327 -> 384 Target range: 458534 -> 458705 328 : IleAlaAlaTyrAlaIleProTrpTyrValAlaProValArgIleGlnLysPheIleI : 347 ||| ! !||| !|||||||||||| !||||||:!!||||||||||||!:!:!!: IleArgArgTyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuL 458535 : ATTCGTAGATACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCT : 458592 348 : lePheLeuLeuGlnArgGlyThrLysAsnTyrThrMetGlnIleGlyGlyValPheTh : 366 !:|||:!!! !:!!|||.!!! !!:! !:!!:!! !!: !|||:!!.!!! euPheIleSerGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIl 458593 : TGTTCATATCAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCAT : 458649 367 : rGlySerLeuGluGlyPheAlaThrLeuLeuSerThrSerLeuSerTyrPheThr : 384 !!..|||...||| |||||||||:!! !!.!:!!!!!||| :::|||::: eAlaSerPheGluPhePheAlaThrValThrLysSerTrpLeu***HisPheSer 458650 : TGCatccttcgaatttttcgccaCGGTAACAAAATCTTGGCtatgacatttttct : 458705 vulgar: CbirOr504 327 384 . KQ414815.1 458534 458705 + 113 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458535 458705 113 + . gene_id 2 ; sequence CbirOr504 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 458535 458705 . + . KQ414815.1 exonerate:protein2genome:local exon 458535 458705 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458535 458705 113 + . alignment_id 2 ; Query CbirOr504 ; Align 458535 328 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr504 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 132 -> 234 Target range: 444574 -> 444880 133 : IleCysIleTyrAlaPheLeuGlnLeuLeuProAlaIleLeuAspPheIleIleProL : 152 ||| ||| !!.! ! !|||! !|||!.! !:!!|||.!.:!!:!!|||| IleThrIleIleValThrThrLeuLeuTyrProValSerMetAspLeuLeuValProL 444575 : ATCACAATTATCGTGACGACATTATTATACCCAGTATCAATGGATCTGTTAGTACCTT : 444632 153 : euAsnIleSerArgProArgTyrLeuTyrValArgPheGluPheSerIleAspGluGl : 171 |||||! !|||||||||||||||||| ! ! ! !! .!! !! !:!!:!! euAsnAsnSerArgProArgTyrLeuGlyTyrPheValIleLeuProSerAsnGlnIl 444633 : TGAACAATTCCAGACCTCGTTATCTTGGCTACTTTGTTATTCTTCCCTCTAATCAAAT : 444689 172 : uLysHisPheTyrAlaIleThrPheTyrThrValValSerLeuPheValAlaSerAla : 190 !:!!:!!.!! !! !!!:||||||||| !..!:!! !! !||||||!.!! ! ! eGlnTyrIleAspPheMetThrPheTyrGlyThrLeuValProPheValGlyLeuLeu 444690 : ACAGTATATTGATTTTATGACATTTTATGGGACATTAGTTCCCTTTGTGGGATTATTA : 444746 191 : ThrValIleSerIleGlyThrSerIleLeuThrPheGlyAsnHisSerCysAlaMetL : 210 |||||| !!!!! ! !:!! !:!! !! ! !!.!! :!! !|||::!:!:! ThrValAlaCysThrGluSerLeuLeuSerIleSerAlaMetTyrLeuCysSerLeuT 444747 : ACTGTAGCATGCACGGAATCGCTTCTTAGTATTAGCGCAATGTATCTGTGCAGTTTAT : 444806 211 : euLysIleAlaCysTyrArgMetGluHisValMetAspLysTyrLysSerLeuHisPh : 229 !||||||.!! ! ||| ! :!!:!! !::: ::::::|||...::: || yrLysIleThrGlyTyrValSerGlnTyrTyrIleValGlnPheLysLysIlePhePh 444807 : ATAAGATTACTGGGTACGTATCTCAATACTATatcgtacaatttaaaaaaattttttt : 444863 230 : eValLysArgAsnGlu : 234 | |||::::!! ePhePheArgSerGln 444864 : cttctttcgttcacAA : 444880 vulgar: CbirOr504 132 234 . KQ414815.1 444574 444880 + 111 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 444575 444880 111 + . gene_id 3 ; sequence CbirOr504 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 444575 444880 . + . KQ414815.1 exonerate:protein2genome:local exon 444575 444880 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 444575 444880 111 + . alignment_id 3 ; Query CbirOr504 ; Align 444575 133 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr504 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 129 -> 212 Target range: 464588 -> 464840 130 : ValAlaThrIleCysIleTyrAlaPheLeuGlnLeuLeuProAlaIleLeuAspPheI : 149 :!! !!..!||| .!! !..!!!.|||:!!:!!||||||! !||||||||| ! : IleProValIleLeuPheIleCysLeuLeuGluValLeuProAspIleLeuAspValV 464589 : ATTCCCGTTATACTGTTCATCTGTTTACTCGAAGTATTGCCAGATATTCTCGACGTGG : 464646 150 : leIleProLeuAsnIleSerArgProArgTyrLeuTyrValArgPheGluPheSerIl : 168 !! ||||||||| !|||||| !!!.! ! ! !! :!!! ! ||||||! !|| alAlaProLeuAsnGluSerArgSerHisGlnTyrLeuIleThrAlaGluPhePheIl 464647 : TTGCGCCCCTCAATGAATCTCGTTCTCATCAATACTTAATTACCGCGGAATTTTTCAT : 464703 169 : eAspGluGluLysHisPheTyrAlaIleThrPheTyr<->ThrValValSerLeuPhe : 186 | !!!:.....!! !||| !:!!|||! ! ! |||! !:!!!!!|||.!! eThrAspSerSerProAsnTyrIleValThrCysValGlyThrAspIleThrLeuIle 464704 : CACTGATAGTTCGCCGAATTATATCGTAACTTGTGTTGGTACGGATATTACTCTTATC : 464760 187 : ValAlaSerAlaThrValIleSerIleGlyThrSerIleLeuThrPheGlyAsnHisS : 206 :!!!.! !.!!|||:!!|||:!! !! !|||! !! !!!! !!!. !.!.|||! MetGlyValThrThrIleIleAlaSerGluThrPheThrPheLeuLeuLeuGlnHisI 464761 : ATGGGAGTCACGACAATAATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGCAACATA : 464820 207 : erCysAlaMetLeuLysIle : 212 !|||||||||!!!|||||| leCysAlaMetPheLysIle 464821 : TCTGCGCAATGTTCAAAATC : 464840 vulgar: CbirOr504 129 212 . KQ414815.1 464588 464840 + 104 M 51 153 G 0 3 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464589 464840 104 + . gene_id 4 ; sequence CbirOr504 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464589 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464589 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464589 464840 104 + . alignment_id 4 ; Query CbirOr504 ; Align 464589 130 153 ; Align 464745 181 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr504 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 132 -> 234 Target range: 440462 -> 440768 133 : IleCysIleTyrAlaPheLeuGlnLeuLeuProAlaIleLeuAspPheIleIleProL : 152 ||| ||| !!.! ! !|||! !|||!.! !:!!|||.!.:!!:!!|||| IleThrIleThrValThrThrLeuLeuTyrProValSerMetAspLeuLeuValProL 440463 : ATCACAATTACCGTGACGACATTATTATACCCAGTATCAATGGATCTGTTAGTACCAT : 440520 153 : euAsnIleSerArgProArgTyrLeuTyrValArgPheGluPheSerIleAspGluGl : 171 |||||! !|||||||||||||||||| ||| ... !:!!:!! euAsnLysSerArgProArgTyrLeuGlyTyrPhePheIleLeuProSerAsnGlnIl 440521 : TGAACAAATCCAGACCTCGTTATCTTGGctacttttttattcttccctCTAATCAAAT : 440577 172 : uLysHisPheTyrAlaIleThrPheTyrThrValValSerLeuPheValAlaSerAla : 190 !:!!:!!.!! !! !!!:||||||||| !..!:!! !! !||||||!.!! ! ! eGlnTyrIleAspPheMetThrPheTyrGlyThrLeuValProPheValGlyLeuLeu 440578 : ACAGTATATTGATTTTATGACATTTTATGGGACATTAGTTCCCTTTGTGGGATTATTA : 440634 191 : ThrValIleSerIleGlyThrSerIleLeuThrPheGlyAsnHisSerCysAlaMetL : 210 ||||||! !!!!! ! !:!! !:!! !! !.!!!.!! :!! ! !!::!:!:! ThrValThrCysThrGluSerLeuLeuSerIleIleAlaMetTyrValSerSerLeuT 440635 : ACTGTAACATGCACGGAATCGCTTCTTAGTATTATCGCAATGTATGTGAGCAGTTTAT : 440694 211 : euLysIleAlaCysTyrArgMetGluHisValMetAspLysTyrLysSerLeuHisPh : 229 !||||||.!! ! ||| ! :!! ! !::: ::::::|||...::: || yrLysIleThrGlyTyrValSerGln***TyrIleValGlnPheLysLysIlePhePh 440695 : ATAAGATTACTGGGTACGTATCTCAATAATATatcgtacaatttaaaaaaattttttt : 440751 230 : eValLysArgAsnGlu : 234 | |||::::!! ePhePheArgSerGln 440752 : cttctttcgttcacAA : 440768 vulgar: CbirOr504 132 234 . KQ414815.1 440462 440768 + 103 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 440463 440768 103 + . gene_id 5 ; sequence CbirOr504 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 440463 440768 . + . KQ414815.1 exonerate:protein2genome:local exon 440463 440768 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 440463 440768 103 + . alignment_id 5 ; Query CbirOr504 ; Align 440463 133 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr503 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 336 -> 390 Target range: 458543 -> 458705 337 : TyrAsnThrSerTrpTyrLeuAlaProIleArgValGlnLysLeuIleLeuPheValL : 356 ||| ! ! !!||||||! !||||||:!!|||:!!||||||! !:!!||||||:!!! TyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleS 458544 : TACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATAT : 458601 357 : euGlnArgSerHisLysIlePheAlaLeuAsnValGlyGlyLeuPheSerGlySerLe : 375 !:!!|||||| ! !:!:!: !:!!||| !:!! !|||:!!.!!! !!..|||.. erGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPh 458602 : CAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatcctt : 458658 376 : uGluCysPheAlaThrLeuIleSerAlaSerMetSerTyrPheThr : 390 .||| |||||||||:!!! !!.!:!!!!!::: :::|||::: eGluPhePheAlaThrValThrLysSerTrpLeu***HisPheSer 458659 : cgaatttttcgccaCGGTAACAAAATCTTGGCtatgacatttttct : 458705 vulgar: CbirOr503 336 390 . KQ414815.1 458543 458705 + 107 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458544 458705 107 + . gene_id 1 ; sequence CbirOr503 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 458544 458705 . + . KQ414815.1 exonerate:protein2genome:local exon 458544 458705 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458544 458705 107 + . alignment_id 1 ; Query CbirOr503 ; Align 458544 337 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr500PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 328 -> 382 Target range: 458543 -> 458705 329 : TyrAsnValProTrpTyrLeuAlaProLeuGlnIleGlnLysLeuIleLeuPheLeuL : 348 ||| :!!|||||||||! !|||||||||!:!|||||||||! !:!!||||||:!!! TyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleS 458544 : TACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATAT : 458601 349 : euGlnArgAsnAsnLysValPheThrLeuThrIleGlyGlyLeuPheThrLeuSerLe : 367 !:!!|||!:!!!.!:!||| !:!!||| !!!: !|||:!!.!!! ! |||.. erGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPh 458602 : CAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatcctt : 458658 368 : uGluCysPheAlaSerLeuValSerAlaSerValSerTyrPheThr : 382 .||| ||||||:!!:!!..!!.!:!!!!!::: :::|||::: eGluPhePheAlaThrValThrLysSerTrpLeu***HisPheSer 458659 : cgaatttttcgccaCGGTAACAAAATCTTGGCtatgacatttttct : 458705 vulgar: CbirOr500PSE 328 382 . KQ414815.1 458543 458705 + 114 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458544 458705 114 + . gene_id 1 ; sequence CbirOr500PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 458544 458705 . + . KQ414815.1 exonerate:protein2genome:local exon 458544 458705 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458544 458705 114 + . alignment_id 1 ; Query CbirOr500PSE ; Align 458544 329 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr511 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 190 Query range: 7 -> 216 Target range: 447032 -> 448298 8 : GlnHisPheSerLeuAsnLysIleLeuLeuArgAlaValAlaLeuTrpProTyrArgA : 27 :!!:!!!:!|||||||||:!! ||||||! ! !|||!.!||||||||||||!:!| GluTyrTyrSerLeuAsnGlnGlnLeuLeuThrLeuValGlyLeuTrpProTyrLysA 447033 : GAGTACTATAGCCTCAATCAACAGCTTTTGACGTTGGTCGGACTGTGGCCGTACAAGA : 447090 28 : rgThrLysLeuIleAspPheHisLeuPheLeuValLeuValIleLeuIleSerPheIl : 46 || !||||||! ! !.!!:!! ! !! !:!!||| !!.!!!!!|||!!! !.! rgTyrLysLeuThrPheLeuTyrAsnThrTyrMetLeuPhePhePheIleThrAlaPh 447091 : GGTACAAGTTGACATTCCTTTACAATACCTACATGCTGTTCTTCTTCATCACCGCTTT : 447147 47 : eLeuValGln >>>> Target Intron 1 >>>> LeuThrThrPheLeuThrT : 56 !!!!:!!||| 420 bp ::: |||...|||| ePheLeuGln++ ++IleMetIlePhePheThrT 447148 : CTTTCTTCAGgt.........................agataatgatatttttcaccA : 447597 57 : hrGluTrpThrSerAspValAlaIleLysIleLeuSerSerAlaLeuTyrSerThrIl : 75 |||||! ! !|||..! !:!!!.. ! !:!!!!! !:!! ! ! !|| hrGluLeuAspValAspThrIleLeuSerAspGlyAlaCysIleIleMetLeuLeuIl 447598 : CAGAATTAGACGTTGATACGATTTTAAGTGATGGTGCCTGTATAATCATGTTGCTCAT : 447654 76 : eTyrValValLysTyrAsnSerPheTrpPheAsnAlaAsnThrIleArgCysLeuPhe : 94 ||||:!!||||||||| !!!!|||!! .!.|||!!.!.!:!:!!!|||:!! ! eTyrIleValLysTyrCysThrPheCysLysGlnAlaLysAsnValSerCysValAsn 447655 : CTACATAGTGAAATACTGCACGTTCTGCAAGCAGGCCAAAAACGTGAGTTGTGTGAAC : 447711 95 : GluLysPheGlnTyrIleTyrAspGluLeuThrAspAspSerGluIleAlaIleIleL : 114 |||! !!.||| ! :!! !! ! !|||!!:! !...:!! !|||:!!| GluIleAlaHisTyrTrp***Asn***GlyTyrAspGluLeuSerValIleIleLeuL 447712 : GAAATTGCACATTATTGGTGAAATTAGGGATACGATGAATTAAGCGTTATCATTTTAA : 447771 115 : ysGluTyrGlyHisGluAlaLysArgPhe >>>> Target Intron 2 >>>> : 124 ||.!. !..!... ..!..!!!!.!. 222 bp ysHisSerSerArgCysCysSerSerMet-+ -- 447772 : AGCACAGCTCAAGATGTTGTTCGAGTATGtt.........................tc : 448021 125 : ThrIleLeuMetSerLeuSerGlyValPheSerSerIleThrMetCysLeuLeuProI : 143 ... :::|||::! ! !!.!!!.|||! !|||!:!.!. !|||:!! !. IlePheThrIleSerValValPheAlaLeuSerLeuIleSerPheThrLeuValGluP 448022 : attttcacaatttcagtGGTGTTTGCCTTGTCTTTAATTAGCTTTACCTTGGTTGAGT : 448080 144 : lePheProArgIleLeuGlyIlePheMetSerIleAsnValSerGluGluHisPheMe : 162 !! ! !......||| |||...||| !!!!:||||||||| !..!||| :! heValValHisPheLeuAspIleLeuMetProMetAsnValSerThrArgHisGluLe 448081 : TCGTGGTAcattttctcgatattttaATGCCAATGAACGTATCTACACGGCACGAGCT : 448137 163 : tIleHisIleProArgGluTyrPheIleAspGlnGluLysTyrTyrTyrCysIleLeu : 181 : ! !:!! ! !:!!! !||| !||||||!!:|||!:!!:!:!!! !|||||| uProPheLeu---IleGlnCysPheCysAspGlnAspLysPhePheHisTyrIleLeu 448138 : ACCCTTCCTA---ATTCAATGTTTCTGTGATCAAGATAAATTCTTCCACTATATATTA : 448191 182 : LeuHisMetAspValSerPhePheMetGlyAlaMetIleLeuValAlaThrGlyThrL : 201 :!! !:!! !||| ! !.!!:!!|||!.!! :!::!!:!!|||||| !||| ValPheLeuIleValLeuThrIleLeuGlyGlySerValValLeuAlaThrThrThrT 448192 : GTTTTCTTGATCGTTCTCACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAACGA : 448251 202 : euIlePheSerCysIleLysTyrIleCysGlyLeuPheArgIleAla : 216 ! !!!.! !! !! !:!!:!! !||||||||||||!:!|||||| hrTyrLeuIlePheSerGlnHisCysCysGlyLeuPheLysIleAla 448252 : CTTACTTGATATTCAGTCAACATTGTTGTGGATTGTTCAAAATTGCA : 448298 vulgar: CbirOr511 7 216 . KQ414815.1 447032 448298 + 190 M 42 126 5 0 2 I 0 416 3 0 2 M 74 222 5 0 2 I 0 218 3 0 2 M 42 126 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 447033 448298 190 + . gene_id 1 ; sequence CbirOr511 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 447033 447158 . + . KQ414815.1 exonerate:protein2genome:local exon 447033 447158 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 447159 447160 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 447159 447578 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 447577 447578 . + . intron_id 0 ; splice_site "Ag" KQ414815.1 exonerate:protein2genome:local cds 447579 447800 . + . KQ414815.1 exonerate:protein2genome:local exon 447579 447800 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 447801 447802 . + . intron_id 2 ; splice_site "TT" KQ414815.1 exonerate:protein2genome:local intron 447801 448022 . + . intron_id 2 KQ414815.1 exonerate:protein2genome:local splice3 448021 448022 . + . intron_id 1 ; splice_site "tc" KQ414815.1 exonerate:protein2genome:local cds 448023 448298 . + . KQ414815.1 exonerate:protein2genome:local exon 448023 448298 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 447033 448298 190 + . alignment_id 1 ; Query CbirOr511 ; Align 447033 8 126 ; Align 447579 50 222 ; Align 448023 124 126 ; Align 448149 167 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr511 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 120 -> 215 Target range: 457129 -> 457411 121 : LysArgPheThrIleLeuMetSerLeuSerGlyValPheSerSerIleThrMetCysL : 140 |||::: :!!!!:!!!:!!||| ! !! !.!!:!!:!:..!!!: ! LysLysLysProSerMetIleThrValSerThrTyrCysGlyAlaLeuValIleThrT 457130 : aaaaaaaaaccttcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCA : 457187 141 : euLeuProIlePheProArgIleLeuGlyIlePheMetSerIleAsnValSerGluGl : 159 !|||! !:!!||||||! !:!!|||! !||| ! :!: !!:!:|||! !|||... hrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgPr 457188 : CGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCC : 457244 160 : uHisPheMetIleHisIleProArgGluTyrPheIleAspGlnGluLysTyrTyrTyr : 178 ! ! !:!!:!!:!! !! !|||||||||:!!|||..!:!!|||||| :!! o---CysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHis 457245 : C---TGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCAT : 457298 179 : CysIleLeuLeuHisMetAspValSerPhePheMetGlyAlaMetIleLeuValAlaT : 198 ! !|||:!! !|||!!: !..!!!!.!..!.!!:!.!|||! ! |||..!|||! TyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaA 457299 : TATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTA : 457358 199 : hrGlyThrLeuIlePheSerCysIleLysTyrIleCysGlyLeuPheArgIle : 215 .!! !:!!|||:!!.!.!!! !:!! !:!!:!!||||||||||||!:!:!! snGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457359 : ACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: CbirOr511 120 215 . KQ414815.1 457129 457411 + 119 M 39 117 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457130 457411 119 + . gene_id 2 ; sequence CbirOr511 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457130 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457130 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457130 457411 119 + . alignment_id 2 ; Query CbirOr511 ; Align 457130 121 117 ; Align 457247 161 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr511 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 162 -> 215 Target range: 485767 -> 485926 163 : IleHisIleProArgGluTyrPheIleAspGlnGluLysTyrTyrTyrCysIleLeuL : 182 |||! !||| ! !|||:!!|||:!!||||||:!!||||||!:!||| !||| ! IleProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaA 485768 : ATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAG : 485825 183 : euHisMetAspValSerPhePheMetGlyAlaMetIleLeuValAlaThrGlyThrLe : 201 !|||:!:! !:!!! ! !!.!!!!:||||||!!::!!|||:!!::!||| || laHisValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLe 485826 : CACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatatt : 485882 202 : uIlePheSerCysIleLysTyrIleCysGlyLeuPheArgIle : 215 ||||...:!! |||:!!:!!! !|||||||||!:!! !||| uIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIle 485883 : aattatggCGATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: CbirOr511 162 215 . KQ414815.1 485767 485926 + 119 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485768 485926 119 + . gene_id 3 ; sequence CbirOr511 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485768 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485768 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485768 485926 119 + . alignment_id 3 ; Query CbirOr511 ; Align 485768 163 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr511 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 133 -> 285 Target range: 481992 -> 482878 134 : SerSerIleThrMetCysLeuLeuProIlePheProArgIleLeuGlyIlePheMetS : 153 ||| !:!:! !:!! |||! !! !!!:! ! !:!!|||! !:!!.!!:!: SerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValP 481993 : TCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTC : 482050 154 : erIleAsnValSerGluGluHisPheMetIleHisIleProArgGluTyrPheIleAs : 172 !!:!!|||! !!!!... !||| ....!!! :!! !!! !|||||||||||||| roLeuAsnGluThrArgThrHis---GlnPheProValSerMetGluTyrPheIleAs 482051 : CTCTAAACGAGACTCGTACGCAC---CAATTTCCAGTATCAATGGAGTACTTCATTGA : 482104 173 : pGlnGluLysTyrTyrTyrCysIleLeuLeuHisMetAspValSerPhePheMetGly : 191 ||||:!!||||||! !! !||| !!!!|||..! !!||||||.!!:!:! ! pGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValVal 482105 : CCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTC : 482161 192 : AlaMetIleLeuValAlaThrGlyThrLeuIlePheSerCysIleLysTyrIleCysG : 211 |||! !|||:!!|||!.!! !! !||||||||| !!! !!! :!!:!!:!! !.... AlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaS 482162 : GCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAA : 482221 212 : lyLeuPheArgIleAla{Se} >>>> Target Intron 1 >>>> {r}CysAr : 219 !!||||||! !:!!!.!{||} 436 bp {|}|||!: erLeuPheThrLeuVal{Se}++ +-{r}CysLy 482222 : GCTTGTTCACCCTTGTA{AG}gt.........................aa{T}TGTAA : 482681 220 : gIleAspGlnThrValGluCysProMetPheGlnSerAlaGlyLeuSerLysAspPhe : 238 ! :!! !..! !! ! !::!!.!||| !! !! ! .!. sGlnAsnLeuValAsnAlaValValAlaHisArgLysAlaIleTrpLeuValThrIle 482682 : ACAGAACTTGGTGAACGCTGTGGTTGCACACAGAAAAGCAATCTGGTTAGTTACAATA : 482738 239 : IleLeuTyrLysLysIleValHisAlaIleAspIleHisArgLysAlaIleGluLeuC : 258 ! !! ||| :::::!|||||| ||| ! ! !! !..!!!! ***AspLeuLeuThrIlePheTyrSerIleAsp---HisValHisPro***ArgPheV 482739 : TGAGATTtacttacaattttctactcCATTGAT---CATGTTCATCCTTAAAGGTTTG : 482795 259 : ysAspMetLeuLysSerAsnPheValGlyThrCysPheLeuLeuValLeuValGlyVa : 277 ||| ||||||..!...!:!||| !:!!! ! !:!!:!!:!!||| !!||||| alAspHisLeuLysAspArgTyrValPheSerTyrAlaIleValLeuLeuPheGlyVa 482796 : TAGACCATTTAAAAGACCGATACGTATTCTCTTATGCTATTGTTCTTTTGTTCGGTGT : 482852 278 : lIleSerLeuSerLeuAsnLeuTyr : 285 |:!!|||||||||:!!||||||!:! lValSerLeuSerIleAsnLeuPhe 482853 : TGTCTCTCTCAGCATTAACCTGTTC : 482878 vulgar: CbirOr511 133 285 . KQ414815.1 481992 482878 + 106 M 27 81 G 1 0 M 55 165 S 0 2 5 0 2 I 0 432 3 0 2 S 1 1 M 32 96 G 1 0 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481993 482878 106 + . gene_id 4 ; sequence CbirOr511 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 481993 482240 . + . KQ414815.1 exonerate:protein2genome:local exon 481993 482240 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local splice5 482241 482242 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 482241 482676 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 482675 482676 . + . intron_id 0 ; splice_site "AA" KQ414815.1 exonerate:protein2genome:local cds 482677 482878 . + . KQ414815.1 exonerate:protein2genome:local exon 482677 482878 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 481993 482878 106 + . alignment_id 4 ; Query CbirOr511 ; Align 481993 134 81 ; Align 482074 162 165 ; Align 482678 218 96 ; Align 482774 251 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr506PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 111 -> 201 Target range: 460970 -> 461240 112 : IleValPheThrLeuLeuThrIleCysIleLeuIleIlePheIleLeuLeuProPheL : 131 ...|||||| !:!!..!.!!! !||||||!!:.!! |||:!!|||!:!| PheValPheLeuAlaIleValPheLeuCysLeuIleMetIleAlaLeuIleProTyrL 460971 : ttcgtctttttaGCAATTGTATTCTTATGCCTAATAATGATCGCGTTAATTCCGTATT : 461028 132 : euProArgIlePheGlyIlePhePheLeuValAsnLysSerGluLeuTyrHisAsnVa : 150 ||||||||||||||!.!||| ! ! ! !|||!:!!!!...! !! ! ! euProArgIlePheAlaIleValThrHisGlnAsnArgThrArgProLeuLysIlePr 461029 : TGCCGCGGATCTTCGCGATTGTGACGCATCAGAACAGAACTCGTCCGTTGAAAATACC : 461085 151 : lTyrIleThrLysTyrPheIleAspGluGluLysTyrPheTyrPheIlePheLeuHis : 169 ! !|||..!:!!||| !:!:|||.!..!.:!!|||||| !!.!.|||.!.|||||| oIleIleValGluTyrHisValAspHisAsnGluTyrPheAspLeuIleIleLeuHis 461086 : GATCATCGTGGAGTATCACGTGGATCATAACGAGTACTTCGATCTGATCATATTACAC : 461142 170 : LeuCysSerThrHisTyrIleThrGlyGlyThrLeuLeuValAlaGlyIleIleValA : 189 :!! !! ! !|||!:!||| ! ! !!..!:!!:!! !|||! !:!:! ! ! IleAsnPheCysHisPheIleGlyPheCysValValIleSerAlaGluValThrAsnL 461143 : ATTAACTTCTGCCACTTTATCGGCTTCTGCGTTGTTATATCTGCTGAAGTGACAAATT : 461202 190 : laGlyGlyProIleTyrValCysGlyPhePheAsnIle : 201 !! ! ! !!! !:!!:!!|||..!!!.|||:!!:!! euValLeuAlaLysHisIleCysSerLeuPheAspLeu 461203 : TGGTACTTGCGAAACACATTTGCTCGTTGTTCGATCTT : 461240 vulgar: CbirOr506PSE 111 201 . KQ414815.1 460970 461240 + 115 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 460971 461240 115 + . gene_id 1 ; sequence CbirOr506PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 460971 461240 . + . KQ414815.1 exonerate:protein2genome:local exon 460971 461240 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 460971 461240 115 + . alignment_id 1 ; Query CbirOr506PSE ; Align 460971 112 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr506PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 320 -> 379 Target range: 458543 -> 458798 321 : TyrAsnIleArgTrpTyrIleAlaProValArgValGlnArgLeuIleLeuPheLeuL : 340 ||| |||! !|||||| !||||||:!!|||:!!|||!:!! !:!!||||||:!!! TyrLeuIleProTrpTyrArgAlaProLeuArgIleGlnLysTyrLeuLeuPheIleS 458544 : TACTTGATTCCATGGTACCGTGCTCCATTACGAATACAAAAGTATCTCTTGTTCATAT : 458601 341 : euGlnArgGlyValLysProTyrSerValLysPheGlyGlyLeuTyrIleLeuCysLe : 359 !:!!|||.!! !!:! ! !|||:!! .!. !|||:!! !||| .. erGluArgSerLysArgValSerSerLeuCysMetTyrGlyMetIleIleAlaSerPh 458602 : CAGAACGCAGCAAAAGAGTGAGTTCCTTGTGCATGTATGGCATGATCATTGCatcctt : 458658 360 : uGluThrPheAlaThr >>>> Target Intron 1 >>>> LeuSerThrAlaS : 369 .||| ||||||||| 78 bp !!!! !! !|||: eGluPhePheAlaThr++ ++PheMetLysAlaA 458659 : cgaatttttcgccaCGgt.........................agTTCATGAAAGCAG : 458766 370 : erIleSerTyrPheThrValIleTyrSerIle : 379 !!!!:||||||! !||||||:!!||||||||| laMetSerTyrCysThrValLeuTyrSerIle 458767 : CGATGTCCTATTGCACGGTATTATATTCCATC : 458798 vulgar: CbirOr506PSE 320 379 . KQ414815.1 458543 458798 + 114 M 44 132 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 458544 458798 114 + . gene_id 2 ; sequence CbirOr506PSE ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 458544 458675 . + . KQ414815.1 exonerate:protein2genome:local exon 458544 458675 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 458676 458677 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 458676 458753 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 458752 458753 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 458754 458798 . + . KQ414815.1 exonerate:protein2genome:local exon 458754 458798 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 458544 458798 114 + . alignment_id 2 ; Query CbirOr506PSE ; Align 458544 321 132 ; Align 458754 365 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr509PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 226 -> 272 Target range: 441705 -> 441843 227 : TyrAsnAlaProTrpTyrLeuValProLeuLysIleGlnLysLeuIleLeuPheLeuL : 246 ||||||:!! !!||||||! !|||||||||!.. |||||||||:!!||||||:!!: TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 441706 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAGAAGTTGTTATTGTTCATCA : 441763 247 : euGlnArgAsnAsnLysAlaPheThrLeuAsnIleGlyGlyLeuPheThrLeuSerIl : 265 !!..!!:!!:!!..! !!! !! !:!!|||:!!..!|||:!!|||.!!! !!!! etMetLysSerThrIleProCysLysMetAsnLeuSerGlyIlePheAlaProCysTy 441764 : TGATGAAAAGTACGATCCCATGTAAGATGAATCTCTCCGGTATATTTGCTCCGTGTTA : 441820 266 : eGluArgPheAlaSerLeuMet : 272 !:!! !!|||:!!|||:!!!!: rLysGlyPheSerSerValIle 441821 : CAAAGGTTTTTCCTCGGTAATT : 441843 vulgar: CbirOr509PSE 226 272 . KQ414815.1 441705 441843 + 101 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 441706 441843 101 + . gene_id 1 ; sequence CbirOr509PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 441706 441843 . + . KQ414815.1 exonerate:protein2genome:local exon 441706 441843 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 441706 441843 101 + . alignment_id 1 ; Query CbirOr509PSE ; Align 441706 227 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr509PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 226 -> 272 Target range: 445817 -> 445955 227 : TyrAsnAlaProTrpTyrLeuValProLeuLysIleGlnLysLeuIleLeuPheLeuL : 246 ||||||:!! !!||||||! !|||||||||!.. |||||||||:!!||||||:!!: TyrAsnSerThrTrpTyrCysValProLeuSerAlaGlnLysLeuLeuLeuPheIleM 445818 : TACAATTCTACTTGGTATTGCGTTCCGTTAAGCGCGCAAAAGTTGTTATTGTTCATCA : 445875 247 : euGlnArgAsnAsnLysAlaPheThrLeuAsnIleGlyGlyLeuPheThrLeuSerIl : 265 !!..!!:!!:!!..! !!! !! !:!!|||:!!..!|||:!!|||.!!! !!!! etMetLysSerThrIleProCysLysIleAsnLeuSerGlyIlePheAlaProCysTy 445876 : TGATGAAAAGTACGATCCCATGTAAGATTAATCTCTCCGGTATATTTGCTCCGTGTTA : 445932 266 : eGluArgPheAlaSerLeuMet : 272 !:!! !!|||:!!|||:!!!!: rLysGlyPheSerSerValIle 445933 : CAAAGGTTTTTCCTCGGTAATT : 445955 vulgar: CbirOr509PSE 226 272 . KQ414815.1 445817 445955 + 101 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 445818 445955 101 + . gene_id 2 ; sequence CbirOr509PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 445818 445955 . + . KQ414815.1 exonerate:protein2genome:local exon 445818 445955 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 445818 445955 101 + . alignment_id 2 ; Query CbirOr509PSE ; Align 445818 227 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr515 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 332 -> 393 Target range: 128560 -> 128303 333 : AlaTyrAsnValTyrTrpTyrLysAlaProIleArgIleGlnLysLeuIleLeuPheL : 352 ::!||| !!.! ! |||||||||||||||:::::: ||||||::::!!||||||| SerTyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheL 128560 : AGCTATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCC : 128503 353 : euIleGluArgSerThrLysSerPheAsnLeuArgValValGlyValLeuValAlaSe : 371 ||!!:.!.|||! !! !:!! !!! !!..|||!:!:!! !..!:!!:!!!.!|||.! euMetHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGl 128502 : TCATGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGG : 128446 372 : rIleGluArgPheAlaSer >>>> Target Intron 1 >>>> LeuMetLysT : 381 !! !||| !!:!|||!!! 74 bp :!!:!!:!!| yAsnGluLeuTyrAlaThr++ ++MetValGlnT 128445 : TAACGAGTTGTACGCTACCgt.........................agaTGGTGCAGA : 128342 382 : hrSerIleSerTyrPheThrValIleHisSerLeuGln : 393 ||.!!.!!|||||||||||||||:!!:!!||||||||| hrGlyPheSerTyrPheThrValLeuTyrSerLeuGln 128341 : CTGGTTTCTCCTACTTTACGGTTCTCTACTCGTTGCAA : 128304 vulgar: CbirOr515 332 393 . KQ414817.1 128560 128303 - 126 M 45 135 5 0 2 I 0 70 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128304 128560 126 - . gene_id 1 ; sequence CbirOr515 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128560 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128560 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128304 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128304 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128304 128560 126 - . alignment_id 1 ; Query CbirOr515 ; Align 128561 333 135 ; Align 128352 378 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr515 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 134 -> 214 Target range: 130406 -> 130166 135 : ValIleSerPheAsnMetLeuSerPheMetProTyrPheLeuSerAlaIleLeuHisI : 154 :!!:!!.!!||| !.!.|||..!.!!:!:||| ! .!!|||.!! !|||! !! !: LeuLeuGlyPheValPheLeuGlnIleLeuProGlnIleLeuGlyIleIleSerProL 130406 : CTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAATTTTAGGCATAATTTCACCTC : 130349 155 : leAsnGluSerAsnHisProMetGlnLeuPheLeuThrGluTyrPheValAspGluGl : 173 !!!.!|||! !||| ! !! !||| !!! !|||||||||||||||||| ! :! euThrGluIleAsnThrAsnLysLeuLeuValArgThrGluTyrPheValAspTyrLy 130348 : TAACCGAGATCAATACTAACAAATTACTCGTTCGAACCGAATACTTTGTCGACTACAA : 130292 174 : uLysTyrPheTyrLeuIleLeuLeuHisThrAsnValAlaPheSerIleGlyGlyThr : 192 ! ! |||.!!||||||||| !:!!|||.!!!.!:!!|||.!.! ! !.!!! !||| sAspTyrIleTyrLeuIleThrIleHisAlaThrIleAlaIleMetCysSerValThr 130291 : AGATTACATTTATCTAATCACGATCCACGCGACTATAGCAATAATGTGTAGTGTGACT : 130235 193 : AlaPheAlaAlaThrGlyLeuMetLeuLeuSerTyrValGluHisSerCysGlyMetP : 212 ! !::!!:!! !:::::: :::::! !|||! ! !!||||||| MetGlnIleSerSerAspIleLeuAsnAsnIlePheMetMetHisIleSerGlyMetP 130234 : ATGCAAATTAGCAGCGATAttttgaataacatatttatGATGCACATCAGTGGAATGT : 130175 213 : heGlnIle : 214 ||:!!:!! heGluVal 130174 : TCGAGGTA : 130167 vulgar: CbirOr515 134 214 . KQ414817.1 130406 130166 - 116 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130167 130406 116 - . gene_id 2 ; sequence CbirOr515 ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130167 130406 . - . KQ414817.1 exonerate:protein2genome:local exon 130167 130406 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 130167 130406 116 - . alignment_id 2 ; Query CbirOr515 ; Align 130407 135 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr498 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 334 -> 396 Target range: 128560 -> 128300 335 : AlaTyrAspIleGlnTrpTyrValAlaProLeuHisIleGlnLysLeuIleLeuPheL : 354 ::!||| ! !:!!|||||| !||||||::: ||||||::::!!||||||| SerTyrCysAlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheL 128560 : AGCTATTGTGCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCC : 128503 355 : euLeuGlnGluGlyThrLysAspPheThrLeuAsnIleAlaGlyLeuPheIleGlySe : 373 ||:!!!!...! !! !:!! ! !! !|||!!.:!: !..!||| !! !!.!.! euMetHisArgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGl 128502 : TCATGCACAGATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGG : 128446 374 : rLeuGluCysPheAlaThr >>>> Target Intron 1 >>>> LeuAlaLysA : 383 ! !|||! !:!|||||| 74 bp :!!!.!:!!. yAsnGluLeuTyrAlaThr++ ++MetValGlnT 128445 : TAACGAGTTGTACGCTACCgt.........................agaTGGTGCAGA : 128342 384 : laSerLeuSerTyrPheThrValIleTyrSerMetArgLys : 396 !!.!!!!!|||||||||||||||:!!||||||:!!!:!:!! hrGlyPheSerTyrPheThrValLeuTyrSerLeuGlnGlu 128341 : CTGGTTTCTCCTACTTTACGGTTCTCTACTCGTTGCAAGAA : 128301 vulgar: CbirOr498 334 396 . KQ414817.1 128560 128300 - 105 M 45 135 5 0 2 I 0 70 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128301 128560 105 - . gene_id 1 ; sequence CbirOr498 ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128560 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128560 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128301 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128301 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128301 128560 105 - . alignment_id 1 ; Query CbirOr498 ; Align 128561 335 135 ; Align 128352 380 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr505PSE(F) Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 123 -> 213 Target range: 130433 -> 130166 124 : IleLeuThrLeuPheThrValCysCysLeuIleIleIleThrIleLeuProPheLeuP : 143 |||:!! !!:!!|||:!! !!! |||:!! !.!!..!.!!|||! !.!!|||| IleIleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuP 130433 : ATTATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCC : 130376 144 : roTrpIlePheGlyThrPheLeuLeuAlaAsnGluSerArgProLeuHisAsnMetLe : 162 || |||!!.|||! !.!!! !! ! !!.!|||! !!.! !:!!!!.:!:|| roGlnIleLeuGlyIleIleSerProLeuThrGluIleAsn---ThrAsnLysLeuLe 130375 : CGCAAATTTTAGGCATAATTTCACCTCTAACCGAGATCAAT---ACTAACAAATTACT : 130322 163 : uIleValThrGluTyrPheValAspLysGluLysIleValTyrLeuIleLeuLeuHis : 181 |:!! !|||||||||||||||||| ! :!! ! !:!!||||||||| !:!!||| uValArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHis 130321 : CGTTCGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCAC : 130265 182 : ThrTyrAlaSerIleTyrIleGlyValThrAlaLeuValGlyGlyGlyMetMetLeuM : 201 .!! ! !:!!||| !.!!|||||| !! !:!!.!!.!!! !!::::: AlaThrIleAlaIleMetCysSerValThrMetGlnIleSerSerAspIleLeuAsnA 130264 : GCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaata : 130205 202 : etAlaTyrLeuLysHisIleCysGlyLeuPheSerIle : 213 :::::!! !|||||| !!|||:!!|||..!:!! snIlePheMetMetHisIleSerGlyMetPheGluVal 130204 : acatatttatGATGCACATCAGTGGAATGTTCGAGGTA : 130167 vulgar: CbirOr505PSE(F) 123 213 . KQ414817.1 130433 130166 - 112 M 33 99 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130167 130433 112 - . gene_id 1 ; sequence CbirOr505PSE(F) ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130167 130433 . - . KQ414817.1 exonerate:protein2genome:local exon 130167 130433 . - . insertions 0 ; deletions 1 KQ414817.1 exonerate:protein2genome:local similarity 130167 130433 112 - . alignment_id 1 ; Query CbirOr505PSE(F) ; Align 130434 124 99 ; Align 130335 158 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr511 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 123 -> 215 Target range: 1243884 -> 1243605 124 : ThrIleLeuMetSerLeuSerGlyVal<-><->PheSerSerIleThrMetCysLe : 140 |||||||||:!:||||||||||||..! !:!! !||||||! !.!. || ThrIleLeuValSerLeuSerGlyThrLeuPheTyrPheSerIleIlePheValLe 1243884 : actatactcGTCTCTCTTTCAGGTACTTTGTTCTATTTCTCGATAATATTCGTATT : 1243830 141 : uLeuProIlePheProArgIleLeuGlyIlePheMetSerIleAsnValSerGluG : 159 |!!!|||:!!.!!|||! !||||||! !:!! !! !!:!!|||! !!!!..!. uPheProLeuIleProProIleLeuAspValValSerProLeuAsnGluThrArgS 1243829 : ATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGAGACTCGAT : 1243773 160 : luHisPheMetIleHisIleProArgGluTyrPheIleAspGlnGluLysTyrTyr : 177 ..!...!. ::: ||| :::|||.!..!!|||...|||||| ::: erArgIleGluVal---IleLysLeuGlnTyrLeuPheAspMetGluLysAsnPhe 1243772 : CTCGGATAGaagta---ataaaattgcaataccTGTTCGACAtggagaagaatttt : 1243722 178 : TyrCysIleLeuLeuHisMetAspValSerPhePheMetGlyAlaMetIleLeuVa : 196 ||| ::: :!!:!!! ! ! !!!!! |||||| ! !|||:!!:!!:! TyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMetValIleIl 1243721 : tattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAAT : 1243665 197 : lAlaThrGlyThrLeuIlePheSerCysIleLysTyrIleCysGlyLeuPheArgI : 215 !.!!! !! !.!!||| ! ! ! !||| ! :!!! |||||||||||| !: eThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGlyLeuPheAlaV 1243664 : CACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCTG : 1243608 216 : le : 215 !! al 1243607 : TT : 1243606 vulgar: CbirOr511 123 215 . KQ414851.1 1243884 1243605 - 106 M 9 27 G 0 6 M 31 93 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243884 106 - . gene_id 1 ; sequence CbirOr511 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243884 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243884 . - . insertions 6 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243884 106 - . alignment_id 1 ; Query CbirOr511 ; Align 1243885 124 27 ; Align 1243852 133 93 ; Align 1243759 165 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 769 Query range: 15 -> 248 Target range: 194138 -> 194831 16 : TyrValAsnGluGlnTyrLeuAlaAspThrGluTyrValValArgValAlaLysThrL : 35 ||| !|||! .!.||| ! !||||||||||||!.!|||||||||||||||.!!| TyrArgAsnValAsnTyrLysLeuAspThrGluTyrAlaValArgValAlaLysAlaL 194139 : TACCGCAACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGCAAAAGCGC : 194196 36 : euLeuMetProIleGlyIleTrpProArgTyrGlyAspAsnSerThrLeuSerAsnAl : 54 |||||! ||||||||||||||||||||| !!::!!||| !! !..!!..!. euLeuThrProIleGlyIleTrpProArg------GluAspSerLeuArgAspArgVa 194197 : TTCTAACACCGATCGGTATCTGGCCAAGG------GAGGATTCTCTTCGCGACAGAGT : 194247 55 : aIleIleTyrIleArgValCysLeuIlePheCysLeuMetLeuPheLeuLeuThrPro : 73 ! !:!:!:! !!:!..! !!:!!:!!|||..!||||||! !|||||||||..!||| lArgLeuPheAlaGlnThrGlyValValPheAlaLeuMetCysPheLeuLeuValPro 194248 : CCGACTGTTCGCTCAAACTGGCGTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCT : 194304 74 : HisPheIleTrpThrTrpPheLysAlaGluAspLeuArgLysLeuMetLysIleIleA : 93 ||| ! |||!::|||!::||| ! ..!|||||||||! !!:!! !||||||:!!|||| HisValIleTyrThrTyrPheAspCysGluAspLeuThrArgTyrMetLysValIleA 194305 : CACGTGATCTACACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAAGGTAATCG : 194364 94 : laAlaGlnValPheSerSerLeuAlaValLeuLysPheTrpThrLeuIleLeuAsnLy : 112 ||||||||||||||||| !||||||:!!:!!||||||||||||:!!|||:!!|||!: laAlaGlnValPheSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnAr 194365 : CGGCGCAAGTGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAG : 194421 113 : sGlnAspIleArgTyrCysLeuGluIleMetGluAsnAspTyrArgValValGluSer : 131 !:!!!!:||||||!:!|||||| ! ||||||!...!.||||||! !||||||!!! gLysGluIleArgPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCys 194422 : GAAAGAGATCAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGC : 194478 132 : GluGluAspArgGlnIleMetLeuLysAsnAlaLysIleGlyArgPhePheThrThrA : 151 |||||||||||||||:!:||| !!!. !||||||||||||||||||||||||||| GluGluAspArgGlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrL 194479 : GAGGAGGATCGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCC : 194538 152 : laTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleMetProLeuLe : 170 !|||||||||||||||||||||||||||||||||||||||||||||:!:||||||:! euTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMe 194539 : TGTACTTGGGACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGAT : 194595 171 : uGlnProArgValLeuArgSerAspAsnThrThrMetIleProLeuProTyrProSer : 189 !..! !|||:!!:!!!:!..!||||||!:!|||..!||||||||||||||| !||| tSerGluArgIleValLysGluAspAsnSerThrGlnIleProLeuProTyrLeuSer 194596 : GTCGGAGAGGATTGTCAAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGC : 194652 190 : GluTyrValPhePheIleValGluAspSerProLeuTyrGluIleValPheValThrG : 209 .!.|||||||||||| :!!||||||||||||:!!|||||||||..!||||||:!!| AsnTyrValPhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerG 194653 : AACTATGTTTTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGC : 194712 210 : lnIleLeuIleSerSerIleIleLeuSerThrAsnThrGlyValTyrSerLeuIleAl : 228 ||||||||||||||||||||||||||||||||||| !|||:!!|||||||||:!!|| lnIleLeuIleSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAl 194713 : AGATACTGATTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGC : 194769 229 : aCysValValMetHisCysCysCysLeuPheGluValThrSerAsnArgAlaGluLys : 247 | !:!!:!!|||||||||||| !!||||||||||||||||||!..||| !|||! aThrIleIleMetHisCysCysGlyLeuPheGluValThrSerArgArgMetGluThr 194770 : TACTATTATTATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGATGGAGACT : 194826 248 : Leu : 248 :!! Ile 194827 : ATT : 194831 vulgar: NvOr2 15 248 . KQ414889.1 194138 194831 + 769 M 29 87 G 2 0 M 202 606 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194139 194831 769 + . gene_id 1 ; sequence NvOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194139 194831 . + . KQ414889.1 exonerate:protein2genome:local exon 194139 194831 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 194139 194831 769 + . alignment_id 1 ; Query NvOr2 ; Align 194139 16 87 ; Align 194226 47 606 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 360 Query range: 261 -> 417 Target range: 194849 -> 198624 262 : GluLeuGlyLysLysLeuSerGluLeuIleAspPheHisValLysAlaIle{Gl} > : 279 !!::!! !! !:!|||!!!!!::!!:!!.!.||||||:!!|||||||||{:!} AspIleArgGlyArgLeuArgAspValValGlnPheHisLeuLysAlaIle{Ly}++ 194850 : GATATTCGGGGTAGACTTAGGGACGTCGTTCAGTTTCATCTGAAAGCAATT{AA}gt. : 194905 280 : >>> Target Intron 1 >>>> {n}TyrAlaGluThrMetGluAsnAlaLeuAs : 289 1391 bp {!}::!||||||! !!!:|||!!.|||||||| ++{s}PheAlaGluMetIleGluLysAlaLeuAs 194906 : ........................ag{a}tTCGCTGAAATGATCGAGAAAGCACTGAA : 196322 290 : nIleValMetLeuSerGluMetGlyGlyCysThrIleIleIleCysPheLeuGluTyr : 308 |||||||.!.|||||||||||| !||||||||||||||||||||||||||||||||| nIleValPheLeuSerGluMetLeuGlyCysThrIleIleIleCysPheLeuGluTyr 196323 : CATCGTGTTTCTATCAGAGATGCTTGGCTGCACTATCATCATATGTTTCCTGGAATAC : 196379 309 : GlyIleLeuGln >>>> Target Intron 2 >>>> AspLeuGluAspArgGl : 318 |||:!!:!! ! 65 bp |||! !! |||!.!:! GlyValIleVal++ ++AspTrpAlaAspHisLy 196380 : GGTGTAATCGTGgt.........................agGATTGGGCCGATCACAA : 196474 319 : uTyrLeuGlyMetValThrTyrIleMetLeuMetThrSerIlePheValAsnValPhe : 337 ! |||.!!|||:!!||||||.!!:!:|||||||||||||||||||||||||||||| sThrLeuSerMetMetThrTyrPheValLeuMetThrSerIlePheValAsnValPhe 196475 : GACACTCAGCATGATGACGTACTTCGTTCTGATGACATCGATATTCGTGAACGTGTTC : 196531 338 : IleLeuSerTyrValGlyAspLysValLysGluGln >>>> Target Intron 3 : 350 |||:!!|||!:!:!!||||||::::!!|||:!! 82 bp IleIleSerPheIleGlyAspArgLeuLysGlnVal++ 196532 : ATAATCTCGTTCATCGGTGATCGTCTTAAACAAGTggt.................... : 196572 351 : >>>> SerGluAlaIleGlyPheSerAlaTyrSerMetGlnTrpValAspLeuPro : 366 |||||| !:!!||| !!!:!!|||! !|||! !||| !||||||||| ++SerGluArgValGlyGluThrSerTyrPheMetProTrpTyrAspLeuPro 196573 : .....agAGCGAAAGAGTAGGCGAAACGTCGTACTTCATGCCGTGGTACGATCTTCCG : 196700 367 : AsnGluPheIleMetLysAspLeuLysPheValMetAlaArgAlaAsnGlnProThrA : 386 :!!!!: :!! |||:!!:!!!:! :!!!!: !||||||!:!!!.|||:!!! AspAsp---LeuAlaLysAsnIleArgThrIleIleLeuArgAlaSerHisProSerS 196701 : GACGAT---TTAGCCAAGAATATAAGAACGATCATACTAAGAGCCAGTCATCCGTCAA : 196757 387 : rgLeuThrAlaGlyLysLeuPheAspLeuSerLeuGlnGlyPheCysAsp >>>> T : 403 !!|||:!!!.!!.!||||||||||||||||||||||||!.!||||||||| erLeuSerGlyAlaLysLeuPheAspLeuSerLeuGlnAlaPheCysAsp++ 196758 : GTTTGTCTGGCGCCAAGTTGTTCGATCTTTCGCTTCAAGCATTTTGCGACgt...... : 196810 404 : arget Intron 4 >>>> ValAlaLysThrSerMetAlaTyrLeuAsnPheLeuA : 415 1772 bp |||..!||||||||| !||||||...|||||||||: ++ValCysLysThrSerAlaAlaTyrPheAsnPheLeuG 196811 : ...................agGTTTGCAAAACTTCTGCGGCctacttcaattttctac : 198616 416 : rgThrLeu : 417 ::.!!:!! lnAlaMet 198617 : aagCAATG : 198624 vulgar: NvOr2 261 417 . KQ414889.1 194849 198624 + 360 M 17 51 S 0 2 5 0 2 I 0 1387 3 0 2 S 1 1 M 33 99 5 0 2 I 0 61 3 0 2 M 37 111 5 0 2 I 0 78 3 0 2 M 19 57 G 1 0 M 33 99 5 0 2 I 0 1768 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194850 198624 360 + . gene_id 2 ; sequence NvOr2 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 194850 194902 . + . KQ414889.1 exonerate:protein2genome:local exon 194850 194902 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 194903 194904 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 194903 196293 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 196292 196293 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 196294 196393 . + . KQ414889.1 exonerate:protein2genome:local exon 196294 196393 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 196394 196395 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 196394 196458 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 196457 196458 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 196459 196569 . + . KQ414889.1 exonerate:protein2genome:local exon 196459 196569 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 196570 196571 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 196570 196651 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 196650 196651 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 196652 196807 . + . KQ414889.1 exonerate:protein2genome:local exon 196652 196807 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 196808 196809 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 196808 198579 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 198578 198579 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 198580 198624 . + . KQ414889.1 exonerate:protein2genome:local exon 198580 198624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194850 198624 360 + . alignment_id 2 ; Query NvOr2 ; Align 194850 262 51 ; Align 196295 280 99 ; Align 196459 313 111 ; Align 196652 350 57 ; Align 196709 370 99 ; Align 198580 403 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 308 Query range: 15 -> 263 Target range: 208179 -> 208926 16 : TyrValAsnGluGlnTyrLeuAlaAspThrGluTyrValValArgValAlaLysThrL : 35 !:!:!!|||..!.!.||| ! !||| !...!:! !||||||:!! ! ! ! PheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpT 208180 : TTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGA : 208237 36 : euLeuMetProIleGlyIleTrpProArgTyrGlyAspAsnSerThrLeuSerAsnAl : 54 !|||! ! !|||||| !|||||||||! ! !|||..!||| !|||..!|||:: hrLeuLysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSe 208238 : CGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAG : 208294 55 : aIleIleTyrIleArgValCysLeuIlePheCysLeuMetLeuPheLeuLeuThrPro : 73 ! ! !:!! ! ! |||! ! !||||||:!: !|||:!!:!!! !||| rGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIlePro 208295 : CCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCG : 208351 74 : HisPheIleTrpThrTrpPheLysAlaGluAspLeuArgLysLeuMetLysIleIleA : 93 ! !!!:!::.!! .!! !!.!||||||!!! ! ! ! !:!:|||||| !: ThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysS 208352 : ACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTA : 208411 94 : laAlaGlnValPheSerSerLeuAlaValLeuLysPheTrpThrLeuIleLeuAsnLy : 112 :!|||! ! !|||! !! !:!!||| !! !|||!:! !! !:!!! !:!!..!:! erAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGl 208412 : GCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGA : 208468 113 : sGlnAspIleArgTyrCysLeuGluIleMetGluAsnAspTyrArgValValGluSer : 131 ! ||||||||| ! |||:!!||| !:!:||| !|||!::||| !|||||| ! uGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHis 208469 : GGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCAC : 208525 132 : GluGluAspArgGlnIleMetLeuLysAsnAlaLysIleGlyArgPhePheThrThrA : 151 ||||||||||||:!!||||||||| ! ||||||!...!!!.!||| .!.! !..! GluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValI 208526 : GAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGA : 208585 152 : laTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleMetProLeuLe : 170 !! ! !!.!!!!! !|||||||||...::: |||:::||| !:!!|||||| leCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuTh 208586 : TATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCAC : 208642 171 : uGlnProArgValLeu<->ArgSerAspAsnThrThrMetIleProLeuProTyrPro : 188 !!:! !!:!|||:!! ..!.!!! !||| !||| ! ! !||| !|||||| rArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrPro 208643 : TCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCT : 208699 189 : SerGluTyrValPhePheIleValGluAspSerProLeuTyrGluIleValPheValT : 208 ! ! !!.!!.!. !|||..! !!||||||:!! !!|||||| !!!:!..!. ValProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrV 208700 : GTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGG : 208759 209 : hrGlnIleLeuIleSerSerIleIleLeuSerThrAsnThrGlyValTyrSerLeuIl : 227 .!|||:!:||| .!!! !:!! !! !!:!! !!....!|||!.!! !.!!||| alGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAl 208760 : TACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGC : 208816 228 : eAlaCysValValMetHisCysCysCysLeuPheGluValThrSerAsnArgAlaGlu : 246 !||| :!!!.!||||||...||| ! ! !.!.:!!:!! !! !::! !! !||| aAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGlu 208817 : CGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAG : 208873 247 : LysLeuLeuArgGlyMetLysTyrAspLysSerLysIleSerProGluLeu : 263 ||||||:!! !||| !:!! !!!!::!!!.!!!.:!:..!! !..!||| LysLeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeu 208874 : AAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTG : 208926 vulgar: NvOr2 15 263 . KQ414889.1 208179 208926 + 308 M 160 480 G 0 3 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208180 208926 308 + . gene_id 3 ; sequence NvOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208180 208926 . + . KQ414889.1 exonerate:protein2genome:local exon 208180 208926 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208180 208926 308 + . alignment_id 3 ; Query NvOr2 ; Align 208180 16 480 ; Align 208663 176 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 290 Query range: 0 -> 251 Target range: 221300 -> 222056 1 : MetThrSerLysValSerProLysLeuGluLysAlaProLeuAlaTyrValAsnGluG : 20 :!!:!!!!!! ! !!.!||| ! !!!:!.. ! !!! !.!! !|||.!. ! . ValSerThrMetGlnLysProValThrAspSerLeuSerSerThrArgValGluTyrA 221301 : GTGTCAACGATGCAGAAACCAGTAACAGACAGTCTGTCTTCGACTCGTGTTGAATACG : 221358 21 : lnTyrLeuAlaAspThrGluTyrValValArgValAlaLysThrLeuLeuMetProIl : 39 !.||| !.!!:!!..!:!!! !|||!:!:!!::!::: !:!!|||! !||||| spTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIl 221359 : ATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGAT : 221415 40 : eGlyIleTrpProArgTyrGlyAspAsnSerThrLeuSerAsnAlaIleIleTyrIle : 58 ||||:!!||||||!.!! !.!:!!! !||||||:!!..!!.. !:!! !!:::!: eGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLeu 221416 : CGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCTG : 221472 59 : ArgValCysLeuIlePheCysLeuMetLeuPheLeuLeuThrProHisPheIleTrpT : 78 ! ! ! !:!! !!:! !!|||!!: !|||||||||..!||| ! !:!!!::. IleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyrV 221473 : ATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACG : 221532 79 : hrTrpPheLysAlaGluAspLeuArgLysLeuMetLysIleIleAlaAlaGlnValPh : 97 .! .!!:!!!.!||||||:!! !!!. !!!:|||:!::!:!.! !! ! !|| alIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPh 221533 : TGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTT : 221589 98 : eSerSerLeuAlaValLeuLysPheTrpThrLeuIleLeuAsnLysGlnAspIleArg : 116 |!!! !:!!||| !!||||||!:! !||||||||| !!:!!.!.||||||||| eCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArg 221590 : CTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGT : 221646 117 : TyrCysLeuGluIleMetGluAsnAspTyrArgValValGluSerGluGluAspArgG : 136 ! |||:!!||| !!!:||| |||!::!:! !:!! ! !...:!!|||!:!. GluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLysA 221647 : GAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAGG : 221706 137 : lnIleMetLeuLysAsnAlaLysIleGlyArgPhePheThrThrAlaTyrLeuGlyLe : 155 !.||||||:!!:!!||||||! .!!|||||| !!.! !! ! !! ! ! !!! spIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePh 221707 : ATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTT : 221763 156 : uSerTyrGlyGlyAlaLeuProTyrHisIleIleMetProLeuLeuGlnProArgVal : 174 !! !|||.!!||| ::: |||:::||| !!!:|||!!! ! ! !!:!:!! eMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIle 221764 : CATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATT : 221820 175 : LeuArgSerAsp<->AsnThrThrMetIleProLeuProTyrProSerGluTyrValP : 193 ! ! !..!||| |||...|||...||||||:!! !!:!|||! !..! !!. ProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPheI 221821 : CCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTA : 221880 194 : hePheIleValGluAspSerProLeuTyrGluIleValPheValThrGlnIleLeuIl : 212 !! !! !..!..! !!||||||:!! !!||||||:!!||| ! !||||||:!! leValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAl 221881 : TCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGC : 221937 213 : eSerSerIleIleLeuSerThrAsnThrGlyValTyrSerLeuIleAlaCysValVal : 231 .!!:!!:!:!!:! !|||! !!..:!!!.!!.!! !||||||:!!||| !!!.! aGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAla 221938 : GGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCT : 221994 232 : MetHisCysCysCysLeuPheGluValThrSerAsnArgAlaGluLysLeuLeuArgG : 251 :!!|||..!||| !!! !.!.:!!||| !! !!:! !! !:!! ! |||:!!!.!| ValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsnG 221995 : GTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAACG : 222054 252 : ly : 251 || ly 222055 : GC : 222056 vulgar: NvOr2 0 251 . KQ414889.1 221300 222056 + 290 M 178 534 G 0 3 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221301 222056 290 + . gene_id 4 ; sequence NvOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221301 222056 . + . KQ414889.1 exonerate:protein2genome:local exon 221301 222056 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221301 222056 290 + . alignment_id 4 ; Query NvOr2 ; Align 221301 1 534 ; Align 221838 179 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 278 Query range: 23 -> 249 Target range: 204227 -> 204902 24 : AspThrGluTyrValValArgValAlaLysThrLeuLeuMetProIleGlyIleTrpP : 43 ||| !..!|||!.!..!||| !!!.!||| !!:!!||| ! !:!!||| |||| AspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaTrpP 204228 : GACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGTGGC : 204285 44 : roArgTyrGlyAspAsnSerThrLeuSerAsnAlaIleIleTyrIleArgValCysLe : 62 ||! ! ! !:!!::!||| !!!!!!!!!.. !:!! |||..! ! :! roIleProValAsnSerSerProPheThrArgLeuValArgArgIleGluHisValVa 204286 : CGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGTAGT : 204342 63 : uIlePheCysLeuMetLeuPheLeuLeuThrProHisPheIleTrpThrTrpPheLys : 81 !! !::: |||.........:!!:!!..!||| !.!!:!:!::..!!::.!.||| lThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheLeuLys 204343 : CACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTGAAG : 204399 82 : AlaGluAspLeuArgLysLeuMetLysIleIleAlaAlaGlnValPheSerSerLeuA : 101 ! !:!!:!! !!:!! ! !:!!||||||:!!!.! !! ||| !!!!|||:!! GluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSerIleG 204400 : GAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCATAC : 204459 102 : laValLeuLysPheTrpThrLeuIleLeuAsnLysGlnAspIleArgTyrCysLeuGl : 120 ! !!!!!|||!:!! ..!:!!:!!! !...! .!. ! |||!:! ! !!|||.! lnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSerLeuAs 204460 : AGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGTTTGAA : 204516 121 : uIleMetGluAsnAspTyrArgValValGluSerGluGluAspArgGlnIleMetLeu : 139 .! !!!:..!..!|||!:: :!!! !! !!!!!:|||:!!||| !|||.!.! ! nThrIleArgArgAspTrp---IleGluAlaThrAspGluAsnArgLeuIlePheArg 204517 : CACCATCAGACGCGACTGG---ATAGAGGCTACGGATGAAAATCGGTTGATTTTCCGC : 204570 140 : LysAsnAlaLysIleGlyArgPhePheThrThrAlaTyrLeuGlyLeuSerTyrGlyG : 159 ..!!!.||||||||||||||| ! ! ! ! !!.! !! !||||||| SerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetTyrGlyG 204571 : TCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGTACGGCG : 204630 160 : lyAlaLeuProTyrHisIleIleMetProLeuLeuGlnProArgValLeuArgSerAs : 178 ||!.!||| !|||...! |||:!:|||||||||::! !! !:!!:!!! ! !!|| lyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleValThrProAs 204631 : GTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTAACACCTGA : 204687 179 : pAsnThrThrMetIleProLeuProTyrProSerGluTyrValPhePheIleValGlu : 197 ||||..!|||!!:! |||||||||! !||| ! :::||||||||| ! !:!! pAsnValThrIleArgProLeuProCysProValTyrPheValPhePheAsnGluGln 204688 : TAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaacGAGCAA : 204744 198 : AspSerProLeuTyrGluIleValPheValThrGlnIleLeuIleSerSerIleIleL : 217 !|||||| !|||||||||||||||:!! !||||||:!! !.!!! !:!!! !! ArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheValThrT 204745 : CGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTGTTACTT : 204804 218 : euSerThrAsnThrGlyValTyrSerLeuIleAlaCysValValMetHisCysCysCy : 236 !:!!..!! !!:!|||..!! !.!!:!! !||| !!|||:!:|||...||| ! yrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAlaCysSe 204805 : ACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGCGTGCAG : 204861 237 : sLeuPheGluValThrSerAsnArgAlaGluLysLeuLeu : 249 !:!!.!...!:!! ! !|||!:! !.!. !|||:!! rMetLeuArgIleLeuValAsnLysMetAsnAlaLeuVal 204862 : CATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTG : 204902 vulgar: NvOr2 23 249 . KQ414889.1 204227 204902 + 278 M 103 309 G 1 0 M 122 366 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204228 204902 278 + . gene_id 5 ; sequence NvOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204228 204902 . + . KQ414889.1 exonerate:protein2genome:local exon 204228 204902 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 204228 204902 278 + . alignment_id 5 ; Query NvOr2 ; Align 204228 24 309 ; Align 204537 128 366 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 266 Query range: 24 -> 235 Target range: 266631 -> 267267 25 : ThrGluTyrValValArgValAlaLysThrLeuLeuMetProIleGlyIleTrpProA : 44 !:!!!:||| !:!!!:!:!! !::! !!!!|||! ||||||||| !||||||! SerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProP 266632 : AGCGATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGC : 266689 45 : rgTyrGlyAspAsnSerThrLeuSerAsnAlaIleIleTyrIleArgValCysLeuIl : 63 !! ..! !!..|||! !|||..!... !:!! !||| ! !:!! !:!! roLeuSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCy 266690 : CGTTGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTG : 266746 64 : ePheCysLeuMetLeuPheLeuLeuThrProHisPheIleTrpThrTrpPheLysAla : 82 !!:!|||! !!!:|||||| !:!!! !||| !!!..!! ! .!.:!!! ! sTyrCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAsp 266747 : CTACTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGAC : 266803 83 : GluAspLeuArgLysLeuMetLysIleIleAlaAlaGlnValPheSerSerLeuAlaV : 102 |||..!:!!|||! ! !:!!|||:!:.!!!.! !!! ! ! !!!!! !:!!!.!! GluSerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyG 266804 : GAGAGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAG : 266863 103 : alLeuLysPheTrpThrLeuIleLeuAsnLysGlnAspIleArgTyrCysLeuGluIl : 121 !:!!!!.!:! ||||||:!:|||..!!..:!!!!:|||||| !|||:!!||| lyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHi 266864 : GAATTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCA : 266920 122 : eMetGluAsnAspTyrArgValValGluSerGluGluAspArgGlnIleMetLeuLys : 140 !|||:!!!..|||!::|||:!!||| !!! !||||||!:!|||:!:||||||||| sMetGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLys 266921 : CATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAG : 266977 141 : AsnAlaLysIleGlyArgPhePheThrThrAlaTyrLeuGlyLeuSerTyrGlyGlyA : 160 ||||||!:!|||||||||!:!.!!.!!! ! !! ! !!.!!!!! ! ! !!|||! AsnAlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyV 266978 : AACGCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTG : 267037 161 : laLeuProTyrHisIleIleMetProLeuLeuGlnProArgValLeuArgSerAspAs : 179 .!||| !||| !:!:|||! ! !!!!! !..!! !! !||| ! !.!!:!!.! alLeuGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGl 267038 : TTCTCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGA : 267094 180 : nThrThrMetIleProLeuProTyrProSerGluTyrValPhePheIle<->ValGlu : 197 .|||! !!!::!!! !||| ! ! !:!!! ||| ! .!.||| |||!!: uThrArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAsp 267095 : GACTAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGAT : 267151 198 : AspSerProLeuTyrGluIleValPheValThrGlnIleLeuIleSerSerIleIleL : 217 !|||||| ! !!|||||||||.!!|||:!!|||.!!:!! !.!!! !|||:!: ThrSerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValA 267152 : ACCAGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGA : 267211 218 : euSerThrAsnThrGlyValTyrSerLeuIleAlaCysValValMetHisCysCys : 235 !|||!:! !..!|||!.!!:!|||||| !||| !!!.! |||...||| snSerSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCys 267212 : ATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGC : 267267 vulgar: NvOr2 24 235 . KQ414889.1 266631 267267 + 266 M 171 513 G 0 3 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266632 267267 266 + . gene_id 6 ; sequence NvOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266632 267267 . + . KQ414889.1 exonerate:protein2genome:local exon 266632 267267 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266632 267267 266 + . alignment_id 6 ; Query NvOr2 ; Align 266632 25 513 ; Align 267148 196 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 260 Query range: 23 -> 205 Target range: 294678 -> 295227 24 : AspThrGluTyrValValArgValAlaLysThrLeuLeuMetProIleGlyIleTrpP : 43 |||..!! ! !! !:!!!:! !..!::!! !||||||! |||||||||:!!|||| AspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpP 294679 : GACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGC : 294736 44 : roArg<->TyrGlyAspAsnSerThrLeuSerAsnAlaIleIleTyrIleArgValCy : 61 ||! ! |||.!! !!!.!|||! !|||!:!!!.!.!:!! |||! !:!!.. roLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAl 294737 : CACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGC : 294793 62 : sLeuIlePheCysLeuMetLeuPheLeuLeuThrProHisPheIleTrpThrTrpPhe : 80 .! ! ! ! !:!:||||||:!!|||..!||| ! !!:: ! ||| aTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCysValPhe 294794 : GTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTC : 294850 81 : LysAlaGluAspLeuArgLysLeuMetLysIleIleAlaAlaGlnValPheSerSerL : 100 ! !..:::::::::::: !||||||:!!:!:!.! !! !:!!!:!|||! !| HisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetL 294851 : CACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGC : 294910 101 : euAlaValLeuLysPheTrpThrLeuIleLeuAsnLysGlnAspIleArgTyrCysLe : 119 ||:!!:!!|||!:!!:! ! !|||:!!|||!!.! !! ! .!!!:!:!!|||:! euSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCysIl 294911 : TCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCAT : 294967 120 : uGluIleMetGluAsnAspTyrArgValValGluSerGluGluAspArgGlnIleMet : 138 !||| !!!:|||||||||!::!:!:!!:!!!!:!:! !||| !!||| !|||||| eGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIleMet 294968 : CGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATG : 295024 139 : LeuLysAsnAlaLysIleGlyArgPhePheThrThrAlaTyrLeuGlyLeuSerTyrG : 158 :!!|||||||||! !:!! !!:! .!.|||..!|||!:! ! !:!!! !|||. IleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleIleTyrS 295025 : ATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACA : 295084 159 : lyGlyAlaLeuProTyrHisIleIleMetProLeuLeuGlnProArgValLeuArgSe : 177 !!..!|||:!! !!|||||| !|||:::|||......... :!! !!.!!. erSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGluAsnLy 295085 : GTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGAGAACAA : 295141 178 : rAspAsnThrThrMetIleProLeuProTyrProSerGluTyrValPhePheIleVal : 196 ! ! |||!.!|||!!: ! !!|||||| !|||.!! ! ! :!!||| ! !!.! sLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheValAspAla 295142 : GAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCT : 295198 197 : GluAspSerProLeuTyrGluIleVal : 205 ! ..!|||||| !|||||||||:!! TyrSerSerProThrTyrGluIleIle 295199 : TATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: NvOr2 23 205 . KQ414889.1 294678 295227 + 260 M 21 63 G 0 3 M 161 483 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294679 295227 260 + . gene_id 7 ; sequence NvOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294679 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294679 295227 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294679 295227 260 + . alignment_id 7 ; Query NvOr2 ; Align 294679 24 63 ; Align 294745 45 483 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 244 Query range: 22 -> 278 Target range: 278564 -> 279338 23 : AlaAspThrGluTyrValValArgValAlaLysThrLeuLeuMetProIleGlyIleT : 42 .!!||| ! !||| !|||!:!:!! !::: !!!!|||! |||||||||:!!| ThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValT 278565 : ACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTAT : 278622 43 : rpProArgTyrGlyAspAsnSerThrLeuSerAsnAlaIleIleTyrIleArgValCy : 61 |||||! ! ! ! ! !!!||||||..!!!. !! ! ! :!!! !!.!! rpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLe 278623 : GGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTT : 278679 62 : sLeuIlePheCysLeuMetLeuPheLeuLeuThrProHisPheIleTrpThrTrpPhe : 80 :!!! !! !! !|||!!: !|||||||||..!||| ! !:!:!! ||| !.!! uIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeu 278680 : AATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTC : 278736 81 : <->LysAlaGluAspLeuArgLysLeuMetLysIleIleAlaAlaGlnValPheSerS : 99 |||.!!! |||||| !! ! !!!:|||!!:|||!.! !!! ! !|||!!!! AspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysT 278737 : GACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCA : 278796 100 : erLeuAlaValLeuLysPheTrpThrLeuIleLeuAsnLysGlnAspIleArgTyrCy : 118 !!:!!|||..!:!!|||!:!!::! !|||!!:! !..! ! ||| !! ! || hrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCy 278797 : CGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATG : 278853 119 : sLeuGluIleMetGluAsnAspTyrArgValValGluSer<-><-><->GluGluAsp : 134 |:!!.!. !!!:...!..|||!:: !:!!..! ||| ||||||::: sValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGlu 278854 : CGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggag : 278910 135 : ArgGlnIleMetLeuLysAsnAlaLysIleGlyArgPhePheThrThrAlaTyrLeuG : 154 |||:::|||||| ! ! !:!|||!:!|||||||||! !!!..!!! ! ! ! !| ArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaG 278911 : agagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCG : 278970 155 : lyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleMetProLeuLeuGlnProAr : 173 ||!!!! !|||..!|||!.!:!! !||| ! !:!:|||||||||!!! ! !|| lyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValAr 278971 : GTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACG : 279027 174 : gValLeuArgSerAspAsnThrThrMetIleProLeuProTyrProSerGluTyrVal : 192 |..! !! !! !|||||| !|||:!!! ! !!! ! !!!:!|||! ! ! !! ! gThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGly 279028 : CACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGC : 279084 193 : PhePheIleValGluAspSerProLeuTyrGluIleValPheValThrGlnIleLeuI : 212 .!!.!! ! !... !||||||! !!:!||||||||| !!! !||| !||| LeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuA 279085 : CTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGG : 279144 213 : leSerSerIleIleLeuSerThrAsnThrGlyValTyrSerLeuIleAlaCysValVa : 231 !:!!! !:!!:!!! !|||..!!.!..!|||!.!! !|||||||||||| !!|| laAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheVa 279145 : CCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGT : 279201 232 : lMetHisCysCysCysLeuPheGluValThrSerAsnArgAlaGluLysLeuLeuArg : 250 ||||||| !||| ! ! !|||..!:!! ! !!..!:! !!!:||||||:!! ! lMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAsp 279202 : CATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGAC : 279258 251 : GlyMetLysTyrAspLysSerLysIleSerProGluLeuGlyLysLysLeuSerGluL : 270 |||:!!||| |||||| !! !!!!! !||| :!!::!|||.!!!!:: GlyValLysGlyArgLysSerLeuSerThrHisGlu------GlnArgLeuGlyAspI 279259 : GGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAA------CAACGACTGGGAGATA : 279312 271 : euIleAspPheHisValLysAlaIle : 278 !!|||!!: !|||:!!||| !:!: leIleGluHisHisLeuLysIleLeu 279313 : TCATCGAGCATCATCTGAAGATACTG : 279338 vulgar: NvOr2 22 278 . KQ414889.1 278564 279338 + 244 M 58 174 G 0 3 M 51 153 G 0 9 M 131 393 G 2 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278565 279338 244 + . gene_id 8 ; sequence NvOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278565 279338 . + . KQ414889.1 exonerate:protein2genome:local exon 278565 279338 . + . insertions 12 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 278565 279338 244 + . alignment_id 8 ; Query NvOr2 ; Align 278565 23 174 ; Align 278742 81 153 ; Align 278904 132 393 ; Align 279297 265 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 240 Query range: 24 -> 233 Target range: 274377 -> 275007 25 : ThrGluTyrValValArgValAlaLysThrLeuLeuMetProIleGlyIleTrpProA : 44 !:!!!:||| !:!!!:!:!! !::! !!!!|||! !||||||||| |||||| SerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProL 274378 : AGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGT : 274435 45 : rgTyrGlyAspAsnSerThrLeuSerAsnAlaIleIleTyrIleArgValCysLeuIl : 63 ! !..! !!.!!!!! !!!!..!... !:!! !:!!::: ::: ||| euAlaSerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCy 274436 : TAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttg : 274492 64 : ePheCysLeuMetLeuPheLeuLeuThrProHisPheIleTrpThrTrpPheLysAla : 82 ::!|||!!!!!:|||! ! !:!!! !||| !.!..!! ! ! .!. !! ! sTyrCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAsp 274493 : ctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGAT : 274549 83 : GluAspLeuArgLysLeuMetLysIleIleAlaAlaGlnValPheSerSerLeuAlaV : 102 |||..!|||!.! ! !:!!|||:!::!!!.! !!! ! ! !!!!! !:!!!.!! GluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyG 274550 : GAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAG : 274609 103 : alLeuLysPheTrpThrLeuIleLeuAsnLysGlnAspIleArgTyrCysLeuGluIl : 121 !:!!!!.!:! ||||||:!:|||..!!..:!!!!:|||||| !|||:!!||| lyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHi 274610 : GAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCA : 274666 122 : eMetGluAsnAspTyrArgValValGluSerGluGluAspArgGlnIleMetLeuLys : 140 !|||:!!!..|||!::|||:!!||| !!! !||||||!:!|||:!:||||||||| sMetGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLys 274667 : CATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAG : 274723 141 : AsnAlaLysIleGlyArgPhePheThrThrAlaTyrLeuGlyLeuSerTyrGlyGlyA : 160 ||||||||||||||||||!:! !!.!!! ! !! ! !!.!!!!! ! ! !!|||! AsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyV 274724 : AACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTG : 274783 161 : laLeuProTyrHisIleIleMetProLeu<->LeuGlnProArgValLeuArgSerAs : 178 .!||| !||| !:!:|||! !!!!! :!!||| !! ! !:!! !!!:!!! alLeuCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGl 274784 : TTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGA : 274840 179 : pAsnThrThrMetIleProLeuProTyrProSerGluTyrValPhePheIleValGlu : 197 :!.!! !|||:!! ! !||||||! ! !:!! ! ! !.!! !! |||!!: uThrArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAsp 274841 : GACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGAC : 274897 198 : AspSerProLeuTyrGluIleValPheValThrGlnIleLeuIleSerSerIleIleL : 217 |||||| ! !!|||||||||.!!!.!:!!|||.!!:!! .!!! !|||:!: ThrSerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValA 274898 : ACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGA : 274957 218 : euSerThrAsnThrGlyValTyrSerLeuIleAlaCysValValMetHis : 233 !|||!:! ..!|||!.!!:!|||||| !||| !!!.! ||| snSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHis 274958 : ATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACAC : 275007 vulgar: NvOr2 24 233 . KQ414889.1 274377 275007 + 240 M 145 435 G 0 3 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274378 275007 240 + . gene_id 9 ; sequence NvOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274378 275007 . + . KQ414889.1 exonerate:protein2genome:local exon 274378 275007 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274378 275007 240 + . alignment_id 9 ; Query NvOr2 ; Align 274378 25 435 ; Align 274816 170 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 235 Query range: 22 -> 278 Target range: 284511 -> 285285 23 : AlaAspThrGluTyrValValArgValAlaLysThrLeuLeuMetProIleGlyIleT : 42 .!!||| ! !||| !|||!:!:!! !::: !!!!|||! |||||||||:!!| ThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValT 284512 : ACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTAT : 284569 43 : rpProArgTyrGlyAspAsnSerThrLeuSerAsnAlaIleIleTyrIleArgValCy : 61 |||||! ! ! ! ! !!!||||||..!!!. !! ! ! :!!! !!.!! rpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLe 284570 : GGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTT : 284626 62 : sLeuIlePheCysLeuMetLeuPheLeuLeuThrProHisPheIleTrpThrTrpPhe : 80 :!!! !! !! !|||!!: !|||||||||..!||| ! !:!:!! ||| !.!! uIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeu 284627 : AATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTC : 284683 81 : <->LysAlaGluAspLeuArgLysLeuMetLysIleIleAlaAlaGlnValPheSerS : 99 |||.!!! |||||| !! ! !!!:|||!!:|||!.! !!! ! !|||!!!! AspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysM 284684 : GACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCA : 284743 100 : erLeuAlaValLeuLysPheTrpThrLeuIleLeuAsnLysGlnAspIleArgTyrCy : 118 !:!!|||!.!:!!|||!:!!::! !||||||! !..! ! ||| !! ! || etMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCy 284744 : TGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATG : 284800 119 : sLeuGluIleMetGluAsnAspTyrArgValValGluSer<-><-><->GluGluAsp : 134 |:!!:!! !!!:... |||!:: !:!!..! ||| ||||||::: sValLysAspIleArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGlu 284801 : CGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggag : 284857 135 : ArgGlnIleMetLeuLysAsnAlaLysIleGlyArgPhePheThrThrAlaTyrLeuG : 154 |||:::|||||| ! ! !:!|||!:!|||||||||! !!!..!!! ! !! ! !| ArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaG 284858 : agagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCG : 284917 155 : lyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleMetProLeuLeuGlnProAr : 173 ||!!!! !|||..!|||!.!!!! !||| !! :!:|||||||||! ! ! !|| lyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysThrValAr 284918 : GTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACG : 284974 174 : gValLeuArgSerAspAsnThrThrMetIleProLeuProTyrProSerGluTyrVal : 192 |..! !! !! !|||||| !|||:!!! ! !!! ! !!!:!|||! ! ! !! ! gThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGly 284975 : CACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGC : 285031 193 : PhePheIleValGluAspSerProLeuTyrGluIleValPheValThrGlnIleLeuI : 212 .!!.!! ! !... !||||||! !!:!||||||||| !!! !||| !||| LeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuA 285032 : CTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGG : 285091 213 : leSerSerIleIleLeuSerThrAsnThrGlyValTyrSerLeuIleAlaCysValVa : 231 !:!!! !:!!|||! !|||..!!.!..!|||!.!! !|||||| !||| !!|| laAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheVa 285092 : CCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGT : 285148 232 : lMetHisCysCysCysLeuPheGluValThrSerAsnArgAlaGluLysLeuLeuArg : 250 ||||||| !||| ! ! !|||..!:!! ! !!..!:! !!!:||||||:!! ! lMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAsp 285149 : CATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGAC : 285205 251 : GlyMetLysTyrAspLysSerLysIleSerProGluLeuGlyLysLysLeuSerGluL : 270 |||:!!||| |||.!! !! !!!!! !||| :!!::!|||.!!!!:: GlyValLysGlyArgLysGlyLeuSerThrHisGlu------GlnArgLeuGlyAspI 285206 : GGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAA------CAACGACTGGGAGATA : 285259 271 : euIleAspPheHisValLysAlaIle : 278 !!|||!!: !|||:!!||| !:!: leIleGluHisHisLeuLysIleLeu 285260 : TCATCGAGCATCATCTGAAGATACTG : 285285 vulgar: NvOr2 22 278 . KQ414889.1 284511 285285 + 235 M 58 174 G 0 3 M 51 153 G 0 9 M 131 393 G 2 0 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284512 285285 235 + . gene_id 10 ; sequence NvOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284512 285285 . + . KQ414889.1 exonerate:protein2genome:local exon 284512 285285 . + . insertions 12 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 284512 285285 235 + . alignment_id 10 ; Query NvOr2 ; Align 284512 23 174 ; Align 284689 81 153 ; Align 284851 132 393 ; Align 285244 265 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 228 Query range: 23 -> 264 Target range: 232450 -> 233176 24 : AspThrGluTyrValValArgValAlaLysThrLeuLeuMetProIleGlyIleTrpP : 43 ||| !|||||| !:!!!:!||| !::: !!!!|||! |||!!:||| !|||| AspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpP 232451 : GACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGC : 232508 44 : roArgTyrGlyAspAsnSerThrLeuSerAsnAlaIleIleTyrIleArgValCysLe : 62 ||||| ! !!!:!.!|||! ! !..!.!. !:!! ! :!: ! ! ! roArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuTh 232509 : CGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCAC : 232565 63 : uIlePheCysLeuMetLeuPheLeuLeuThrProHisPheIleTrpThrTrpPheLys : 81 ! ! !! !||||||:!!! !! !:!!..!||| !.!!:!:!::! ! !|||:!! rCysHisSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGlu 232566 : CTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAA : 232622 82 : AlaGluAspLeuArgLysLeuMetLysIleIleAlaAlaGlnValPheSerSerLeuA : 101 ! ! !..!|||..!:!! !|||||| !|||!.! !!..! ! !! ! !:!!! AspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetG 232623 : GACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGG : 232682 102 : laValLeuLysPheTrpThrLeuIleLeuAsnLysGlnAspIleArgTyrCysLeuGl : 120 .!! !|||!!.!:!!! !|||:!: !!!. !.!.||||||! !||||||:!!|| lyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGl 232683 : GTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGA : 232739 121 : uIleMetGluAsnAspTyrArgValValGluSerGluGluAspArgGlnIleMetLeu : 139 | :!!:!!.!.|||!::||| !|||:!!!.! ! !!|||.!.:!:|||||| uGlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeu 232740 : ACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTG : 232796 140 : LysAsnAlaLysIleGlyArgPhePheThrThrAlaTyrLeuGlyLeuSerTyrGlyG : 159 ||||||||||||:!!||||||! .!..!! ! ! ! ! !! !! !:!! !| LysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrG 232797 : AAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCG : 232856 160 : lyAlaLeuProTyrHisIleIleMetProLeu<->LeuGlnProArgValLeuArgSe : 177 ||!.! ! !! !!.!.|||:!!! !||| :!!... !! ! !:!! !!!: lyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAs 232857 : GTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAA : 232913 178 : rAspAsnThrThrMetIleProLeuProTyrProSerGluTyrValPhePheIleVal : 196 !!!:!:! !:!!||| !|||||||||! ! !!! ! ! !.!..!. !..! nGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThr 232914 : CGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACC : 232970 197 : GluAspSerProLeuTyrGluIleValPheValThrGlnIleLeuIleSerSerIleI : 216 ..! !|||||| ! !!||||||:!!|||||| !||| !||| !.!!! !|||: ArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleV 232971 : AGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCG : 233030 217 : leLeuSerThrAsnThrGlyValTyrSerLeuIleAlaCysValValMetHisCysCy : 235 !: !|||..!!.!..!|||!.!! !.!!||| !||| !:!!!.!||||||...|| alAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCy 233031 : TGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTG : 233087 236 : sCysLeuPheGluValThrSerAsnArgAlaGluLysLeuLeuArgGlyMetLysTyr : 254 | ! ! !.!..!.|||..!! !:::!:! !!!: ! |||:!! !!.!! ! ! sGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGlyGln 233088 : CGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAG : 233144 255 : AspLysSerLysIleSerProGluLeuGly : 264 !!::!!!!! ..! !:!!|||||| GluGluArgValAlaGlnArgLysLeuGly 233145 : GAGGAGAGAGTCGCGCAGAGGAAGTTAGGT : 233176 vulgar: NvOr2 23 264 . KQ414889.1 232450 233176 + 228 M 146 438 G 0 3 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232451 233176 228 + . gene_id 11 ; sequence NvOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232451 233176 . + . KQ414889.1 exonerate:protein2genome:local exon 232451 233176 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232451 233176 228 + . alignment_id 11 ; Query NvOr2 ; Align 232451 24 438 ; Align 232892 170 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 223 Query range: 13 -> 233 Target range: 256613 -> 257276 14 : LeuAlaTyrValAsnGluGlnTyrLeuAlaAspThrGluTyrValValArgValAlaL : 33 !!!||| |||!!. !.!.!:! !::! !!!:!!!:||| !:!!!:!:!! !: PheAlaValValLysThrAsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnA 256614 : TTCGCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATC : 256671 34 : ysThrLeuLeuMetProIleGlyIleTrpProArgTyrGlyAspAsnSerThrLeuSe : 52 :! !!!!|||! ||||||||| !||||||! !! ..!..!!.!!!!||||||.. rgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerThrThrThrLeuGl 256672 : GATGGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGA : 256728 53 : rAsnAlaIleIleTyrIleArgValCysLeuIlePheCysLeuMetLeuPheLeuLeu : 71 !... !:!! !:!! ! ! !:!! !!:! !!! !!!:|||||| !||| uArgAsnValSerIleValLeuAsnIleValCysTyrGlySerIleLeuPheThrLeu 256729 : GCGAAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTG : 256785 72 : ThrProHisPheIleTrpThrTrpPheLysAlaGluAspLeuArgLysLeuMetLysI : 91 ! !||| !!!.:!! ..!!::.!! ! ! !!!:..!!!! :::||| IleProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrMetLysValLysA 256786 : ATACCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaa : 256845 92 : leIleAlaAlaGlnValPheSerSerLeuAlaValLeuLysPheTrpThrLeuIleLe : 110 ...... !!..! ! !!!!! !:!!::! ! !!!.!:! ! !|||:!:|| snPheGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLe 256846 : atttcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTT : 256902 111 : uAsnLysGlnAspIleArgTyrCysLeuGluIleMetGluAsnAspTyrArgValVal : 129 |.!. !:!!|||||||||||||||:!!||| !!!:|||!..|||!::|||:!!||| uGlnGlyLysAspIleArgTyrCysValGluHisIleGluThrAspTrpArgMetVal 256903 : ACAAGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTG : 256959 130 : GluSerGluGluAspArgGlnIleMetLeuLysAsnAlaLysIleGlyArgPhePheT : 149 ..!!!!|||:!!|||!:!|||:!:|||:!!|||||||||!:!.!!||||||!:! ! . ArgArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheGlyArgTyrValA 256960 : AGGAGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGG : 257019 150 : hrThrAlaTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleMetPr : 168 !!||| !! ! !!.!:!!! ! ! .!!|||...... ::: ::: ! ! laThrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePheValSerSerAl 257020 : CCACATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGC : 257076 169 : oLeuLeuGlnProArgValLeuArgSerAspAsnThrThrMetIle<->ProLeuPro : 186 !||| ! ! !! !:!!! ! !.!!:!!.!.||||||!!::!: !|||||| aLeuAsnThrGluIleIleHisValGlyAsnGluThrThrIleValArgValLeuPro 257077 : GCTGAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCT : 257133 187 : TyrProSerGluTyrValPhePheIleValGluAspSerProLeuTyrGluIleValP : 206 ! !! ! ! ! !.!.!!.! !|||!!:.!.|||||| ! !!||||||||| ValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrAsnGluIleValV 257134 : GTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGG : 257193 207 : heValThrGlnIleLeuIleSerSerIleIleLeuSerThrAsnThrGlyValTyrSe : 225 !! !!! !|||! !! ! |||! !||| !!!!!:!!....!.!!:!!!:!|| alPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrValSerIlePheSe 257194 : TCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAG : 257250 226 : rLeuIleAlaCysValValMetHis : 233 |||| ||| ! !!!.!! ||| rLeuAlaAlaValPheAlaThrHis 257251 : TCTCGCGGCTGTTTTTGCCACTCAT : 257276 vulgar: NvOr2 13 233 . KQ414889.1 256613 257276 + 223 M 170 510 G 0 3 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256614 257276 223 + . gene_id 12 ; sequence NvOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256614 257276 . + . KQ414889.1 exonerate:protein2genome:local exon 256614 257276 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256614 257276 223 + . alignment_id 12 ; Query NvOr2 ; Align 256614 14 510 ; Align 257127 184 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 215 Query range: 18 -> 235 Target range: 262825 -> 263479 19 : GluGlnTyrLeuAlaAspThrGluTyrValValArgValAlaLysThrLeuLeuMetP : 38 |||...!:! !::! !!:!!!:||| !:!!!:!:!! !::! !||||||! | GluSerPheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysP 262826 : GAAAGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAAC : 262883 39 : roIleGlyIleTrpProArgTyrGlyAspAsnSerThrLeuSerAsnAlaIleIleTy : 57 |||||||| !||||||! !! !!.!...! !|||! !:!!..!... !||| !: roIleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPh 262884 : CGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTT : 262940 58 : rIleArgValCysLeuIlePheCysLeuMetLeuPheLeuLeuThrProHisPheIle : 76 !:!! !:!! !:!! !!:!||||||!!:|||! ! !:!!! !||| !.!.:!! eLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeu 262941 : TCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTT : 262997 77 : TrpThrTrpPheLysAlaGluAspLeuArgLysLeuMetLysIleIleAlaAlaGlnV : 96 ! ! .!.:!!||||||:!!!!!!.!! ! !:!!:!!:!!:!!!.! !!! ! HisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuG 262998 : CATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCG : 263057 97 : alPheSerSerLeuAlaValLeuLysPheTrpThrLeuIleLeuAsnLysGlnAspIl : 115 ! !!!! !:!!!.!:!!:!!!!.!:! !|||:!:|||:!!!..:!!||||| lyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIl 263058 : GTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATAT : 263114 116 : eArgTyrCysLeuGluIleMetGluAsnAspTyrArgValValGluSerGluGluAsp : 134 |!:! !|||:!!:!! !:!!:!!.!.|||!:: !!:!!||| !!! !|||||| eGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAsp 263115 : ACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGAT : 263171 135 : ArgGlnIleMetLeuLysAsnAlaLysIleGlyArgPhePheThrThrAlaTyrLeuG : 154 !:!!::||||||||||||||||||||| !||||||!:! ! .!!.!!:!!! ! ! GlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaI 263172 : CAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGA : 263231 155 : lyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleMetProLeuLeuGlnProAr : 173 !!!!! ! ! !.!! !:!! ! ! !:!!:!!! !!!!! ! !! ! lePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnVa 263232 : TCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGT : 263288 174 : gValLeuArgSerAspAsnThrThrMetIle<->ProLeuProTyrProSerGluTyr : 191 !:!! ! !.!!:!!.!.|||! !!!::!! !||||||! !||| ! ! ! lIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLys 263289 : GATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAA : 263345 192 : ValPhePheIleValGluAspSerProLeuTyrGluIleValPheValThrGlnIleL : 211 ! !.!!.!! !|||!!: !:!||| ! !!|||||| !!.!!!.!||||||.!!| GluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheL 263346 : GAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTC : 263405 212 : euIleSerSerIleIleLeuSerThrAsnThrGlyValTyrSerLeuIleAlaCysVa : 230 || .!!! !|||:!! !:!!|||!.!..!|||!.!!:!.!!:!!! !||| ! euSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPh 263406 : TGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTT : 263462 231 : lValMetHisCysCys : 235 !!.! |||..!||| eAlaGlyHisAlaCys 263463 : CGCCGGTCATGCTTGC : 263479 vulgar: NvOr2 18 235 . KQ414889.1 262825 263479 + 215 M 165 495 G 0 3 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262826 263479 215 + . gene_id 13 ; sequence NvOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262826 263479 . + . KQ414889.1 exonerate:protein2genome:local exon 262826 263479 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262826 263479 215 + . alignment_id 13 ; Query NvOr2 ; Align 262826 19 495 ; Align 263324 184 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 214 Query range: 28 -> 251 Target range: 226936 -> 227608 29 : ValArgValAlaLysThrLeuLeuMetProIleGlyIleTrpProArgTyrGlyAspA : 48 :!!!:!:!! !::: !||||||! |||:!!|||||||||||| !! !! ! ! IleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgLysS 226937 : ATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAA : 226994 49 : snSerThrLeuSerAsnAlaIleIleTyrIleArgValCysLeuIlePheCysLeuMe : 67 :!||| !:!!.!!!....!.!! !!:::!:! !! !! !||| !!:!...||||| erSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMe 226995 : GCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGAT : 227051 68 : tLeuPheLeuLeuThrProHisPheIleTrpThrTrpPheLysAlaGluAspLeuArg : 86 | !||| !|||..! !! ! !:!:!::..! .!.:!!!.!:!!! ! ! ! tSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyr 227052 : GAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTAC : 227108 87 : LysLeuMetLysIleIleAlaAlaGlnValPheSerSerLeuAlaValLeuLysPheT : 106 !!. !:!!|||!!:|||!.! !!..! !|||! !:!!:!!:!!:!!||||||!:!! AsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrS 227109 : AACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACT : 227168 107 : rpThrLeuIleLeuAsnLysGlnAspIleArgTyrCysLeuGluIleMetGluAsnAs : 125 ! !|||! !!!:!!:!!.!.||||||! ! ! |||:!!||| !!::!! || erMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIleLysTrpAs 227169 : CCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGA : 227225 126 : pTyrArgValValGluSerGluGluAspArgGlnIleMetLeuLysAsnAlaLysIle : 144 |!::!:! !:!!..!! ! !|||||||||.!.:!:|||:!!! ! !!||| ! ! pTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyr 227226 : CTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTAC : 227282 145 : GlyArgPhePheThrThrAlaTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrH : 164 |||||| !!.! !||| !! ! ! !!!! !!:!...... ::: :::: GlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheValPhePheT 227283 : GGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttct : 227342 165 : isIleIleMetProLeuLeuGlnProArgValLeuArgSerAsp<->AsnThrThrMe : 182 ::|||:!!:!:|||:!! ! !!!!||| !! !..!||| ||| !!:! yrIleValValProIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTy 227343 : acATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTA : 227399 183 : tIleProLeuProTyrProSerGluTyrValPhePheIleValGluAspSerProLeu : 201 |||! !:!!|||!:!|||! ! ! ! :!!.!! ! !|||... !!||||||!!! rIleGlnMetProPheProPheProLysIleIleAlaAspValArgTyrSerProPhe 227400 : CATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTC : 227456 202 : TyrGluIleValPheValThrGlnIleLeuIleSerSerIleIleLeuSerThrAsnT : 221 !!|||||| !!||| !..!|||.!!:!!! !.!!! !:!::!:! !.!!..!!..: AsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuHisGlyValThrS 227457 : AACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGT : 227516 222 : hrGlyValTyrSerLeuIleAlaCysValValMetHisCysCysCysLeuPheGluVa : 240 !!!.!!.!! !|||:!! !||| :!!!.!:!:|||..!||| !!! !.!.||||| erAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluVa 227517 : CAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGT : 227573 241 : lThrSerAsnArgAlaGluLysLeuLeuArgGly : 251 | ! !::! !! !! ! ! |||:!! !||| lLeuValSerTrpLeuGlyHisLeuIleAspGly 227574 : GTTGGTGTCCTGGCTGGGACATTTGATCGACGGC : 227608 vulgar: NvOr2 28 251 . KQ414889.1 226936 227608 + 214 M 150 450 G 0 3 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226937 227608 214 + . gene_id 14 ; sequence NvOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226937 227608 . + . KQ414889.1 exonerate:protein2genome:local exon 226937 227608 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226937 227608 214 + . alignment_id 14 ; Query NvOr2 ; Align 226937 29 450 ; Align 227390 179 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 121 -> 249 Target range: 304413 -> 304797 122 : MetGluAsnAspTyrArgValValGluSerGluGluAspArgGlnIleMetLeuLysA : 141 :!:...!.!! |||..! !||||||||| ..!||||||:!!!!:||||||||| LeuSerThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysT 304414 : CTCTCTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAAT : 304471 142 : snAlaLysIleGlyArgPhePheThrThrAlaTyrLeuGlyLeuSerTyrGlyGlyAl : 160 !!!.!:!!!!:|||||| !.!.|||! ! !! ! ! !!!!! !||| !|||!. yrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGl 304472 : ACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGG : 304528 161 : aLeuProTyrHisIleIleMetProLeuLeuGlnProArgValLeuArgSerAspAsn : 179 ! ! !||||||! :!!|||! !!!! ! !! ! !:!! !..! !!||| yThrIleTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsn 304529 : CACCATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAAT : 304585 180 : ThrThrMetIleProLeuProTyrProSerGluTyrValPhePheIleValGluAspS : 199 !|||!!:! !|||||| !||||||!!! ! !!.!!!.||| !|||:!! | ArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrS 304586 : CGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAA : 304645 200 : erProLeuTyrGluIleValPheValThrGlnIleLeuIleSerSerIleIleLeuSe : 218 |||||:!!||||||:!:|||!:! !!..!!!. !:!! !.!!! !:!!|||! !|| erProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSe 304646 : GCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTC : 304702 219 : rThrAsnThrGlyValTyrSerLeuIleAlaCysValValMetHisCysCysCysLeu : 237 |! !!.!.!!|||!.!! !.!!||| !||| ! !!!.!! |||..!||| ! ! ! rIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGln 304703 : TATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAA : 304759 238 : PheGluValThrSerAsnArgAlaGluLysLeuLeu : 249 .!!!!::!!..!! !::!||| !! ! |||:!! IleAspIleValMetSerArgLeuGlyAspLeuVal 304760 : ATTGATATCGTTATGTCTCGATTGGGTGATCTTGTC : 304797 vulgar: NvOr2 121 249 . KQ414889.1 304413 304797 + 172 M 128 384 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304414 304797 172 + . gene_id 15 ; sequence NvOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304414 304797 . + . KQ414889.1 exonerate:protein2genome:local exon 304414 304797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304414 304797 172 + . alignment_id 15 ; Query NvOr2 ; Align 304414 122 384 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 348 -> 419 Target range: 206239 -> 206449 349 : GlnSerGluAlaIleGlyPheSerAlaTyrSerMetGlnTrpValAspLeuProAsnG : 368 |||!:!.!.!.!:!:|||!!.!!!:!!! !!!!:!!.!.||| ! !|||||||||. GlnAsnHisValValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnA 206240 : CAGAACCACGTCGTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACA : 206297 369 : luPheIleMetLysAspLeuLysPheValMetAlaArgAlaAsnGlnProThrArgLe : 387 .! ! !:::..!:!!! !.!.:!!!!:|||! !:!!||| ! |||! !!:!|| rgHis---AlaArgSerMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLe 206298 : GACAT---GCGCGCTCTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATT : 206351 388 : uThrAlaGlyLysLeuPheAspLeuSerLeuGlnGlyPheCysAspValAlaLysThr : 406 |||||||||||||:!!|||!!::!!|||||| .!!||| !||||||::!! !! ! uThrAlaGlyLysMetPheGluMetSerLeuAlaSerPheThrAspValSerMetLys 206352 : AACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTCACCGATGTAAGTATGAAA : 206408 407 : SerMetAlaTyrLeuAsnPheLeuArgThrLeuGluIle : 419 ..!! ! ... |||::: |||! !:!! GlnAsnArgMetPhePhePheIleAspLysLeuAlaVal 206409 : CAGAATCGAATgttttttttcattgataaacTTGCAGTT : 206449 vulgar: NvOr2 348 419 . KQ414889.1 206239 206449 + 105 M 21 63 G 1 0 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206240 206449 105 + . gene_id 16 ; sequence NvOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206240 206449 . + . KQ414889.1 exonerate:protein2genome:local exon 206240 206449 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 206240 206449 105 + . alignment_id 16 ; Query NvOr2 ; Align 206240 349 63 ; Align 206303 371 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 352 -> 410 Target range: 287072 -> 287243 353 : IleGlyPheSerAlaTyrSerMetGlnTrpValAspLeuProAsnGluPheIleMetL : 372 :!!|||!!.|||.!!|||! !!!:.!.||| ! !||||||...:!! ! ! : ValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLys---ThrAlaG 287073 : GTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAA---ACAGCTC : 287127 373 : ysAspLeuLysPheValMetAlaArgAlaAsnGlnProThrArgLeuThrAlaGlyLy : 391 !!! !|||! !.!.:!!.!.||| !:!!|||... !!! !!:!|||||||||||||| lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 287128 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 287184 392 : sLeuPheAspLeuSerLeuGlnGlyPheCysAspValAlaLysThrSerMetAlaTyr : 410 |:!!.!!||||||||||||....!!||||||..!|||::!! ! !!:!:!::!!||| sIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 287185 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 287241 vulgar: NvOr2 352 410 . KQ414889.1 287072 287243 + 103 M 16 48 G 1 0 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287073 287243 103 + . gene_id 17 ; sequence NvOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 287073 287243 . + . KQ414889.1 exonerate:protein2genome:local exon 287073 287243 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 287073 287243 103 + . alignment_id 17 ; Query NvOr2 ; Align 287073 353 48 ; Align 287121 370 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 345 -> 408 Target range: 297632 -> 297818 346 : ValLysGluGlnSerGluAlaIleGlyPheSerAlaTyrSerMetGlnTrpValAspL : 365 |||... |||:!!||| !.!!||| !:!!||||||!:!!!::!!||| !:!!| ValSerCysGlnAlaGluLysPheGlyAsnAlaAlaTyrAsnIleGluTrpTyrAsnL 297633 : GTTTCTTGTCAGGCTGAAAAATTCGGCAATGCAGCTTATAACATCGAATGGTACAACT : 297690 366 : euProAsnGluPheIleMetLysAspLeuLysPheValMetAlaArgAlaAsnGlnPr : 384 ||||| .!. !:!: |||||| !!!.:!!!!:!.!! !|||!!. || euProProAsnArgAlaLeu---AspLeuValLeuMetIleGlyIleAlaLysPhePr 297691 : TACCGCCAAACAGGGCTCTC---GATCTGGTGTTAATGATCGGTATAGCAAAATTTCC : 297744 385 : oThrArgLeuThrAlaGlyLysLeuPheAspLeuSerLeuGlnGlyPheCysAspVal : 403 | !!|||||||||...||||||:::||||||:::|||:!!.!. !||| !!! !||| oProArgLeuThrGlyGlyLysIlePheAspIleSerIleAsnThrPheSerAlaVal 297745 : ACCGAGGCTCACAggtggaaaaatattcgatatatCGATAAACACGTTCAGTGCCGTA : 297801 404 : AlaLysThrSerMet : 408 !!:: |||::: ArgArgGlnSerLeu 297802 : CGTAgacaaagttta : 297818 vulgar: NvOr2 345 408 . KQ414889.1 297632 297818 + 101 M 26 78 G 1 0 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297633 297818 101 + . gene_id 18 ; sequence NvOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297633 297818 . + . KQ414889.1 exonerate:protein2genome:local exon 297633 297818 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 297633 297818 101 + . alignment_id 18 ; Query NvOr2 ; Align 297633 346 78 ; Align 297711 373 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr2 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 352 -> 410 Target range: 280285 -> 280456 353 : IleGlyPheSerAlaTyrSerMetGlnTrpValAspLeuProAsnGluPheIleMetL : 372 :!!||| ! |||.!!|||! !!!:.!.||| ! !||||||...:!! ! ! : ValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLys---LysAlaG 280286 : GTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAG---AAAGCAC : 280340 373 : ysAspLeuLysPheValMetAlaArgAlaAsnGlnProThrArgLeuThrAlaGlyLy : 391 !!! !|||! !.!.:!!.!.||| !:!!|||... !!! !!:!|||||||||||||| lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 280341 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 280397 392 : sLeuPheAspLeuSerLeuGlnGlyPheCysAspValAlaLysThrSerMetAlaTyr : 410 |:!!.!!||||||||||||....!!||||||..!|||::!! ! !!:!:!::!!||| sIleIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyr 280398 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTAT : 280454 vulgar: NvOr2 352 410 . KQ414889.1 280285 280456 + 100 M 16 48 G 1 0 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280286 280456 100 + . gene_id 19 ; sequence NvOr2 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280286 280456 . + . KQ414889.1 exonerate:protein2genome:local exon 280286 280456 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 280286 280456 100 + . alignment_id 19 ; Query NvOr2 ; Align 280286 353 48 ; Align 280334 370 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr2 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 307 -> 417 Target range: 807260 -> 807587 308 : TyrGlyIleLeuGlnAspLeuGluAspArgGluTyrLeuGlyMetValThrTyrIleM : 327 !:!! !.!!||| ! !|||... !:!!!: !!:!!!.! :!!! ! !.!!: PheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheV 807261 : TTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCG : 807318 328 : etLeuMetThrSerIlePheValAsnValPheIleLeuSerTyrValGlyAspLysVa : 346 !:||||||..!!!!:!:.!.:!!.!.:!!!:!:!!! !:!!|||!.!|||:!!! !:! alLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLe 807319 : TTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACT : 807375 347 : lLysGluGlnSerGluAlaIleGlyPheSerAlaTyrSerMetGlnTrpValAspLeu : 365 !:!!..!!:!!!!|||! !|||!.! :!!||||||..! ! ||| ! !! ! uGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCys 807376 : CGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGC : 807432 366 : ProAsnGluPheIleMetLysAspLeuLysPheValMetAlaArgAlaAsnGlnProT : 385 :!!! ! ! ! !:!|||||| !!.:!!!!: !|||!.!|||..!||| ---HisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807433 : ---CACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 386 : hrArgLeuThrAlaGlyLysLeuPheAspLeuSerLeuGlnGlyPheCysAspValAl : 404 !|||:!!||||||||||||!!! !! :!!!:!||| !||| !!::!! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 405 : aLysThrSerMetAlaTyrLeuAsnPheLeuArgThrLeu : 417 !|||.!!||| :!!||||||::! ! :!!!:!..!:!! uLysAlaSerGlySerTyrLeuSerValMetLysValMet 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: NvOr2 307 417 . KQ414940.1 807260 807587 + 127 M 58 174 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807261 807587 127 + . gene_id 1 ; sequence NvOr2 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807261 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807261 807587 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807261 807587 127 + . alignment_id 1 ; Query NvOr2 ; Align 807261 308 174 ; Align 807435 367 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr2 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 348 -> 404 Target range: 117785 -> 117950 349 : GlnSerGluAlaIleGlyPheSerAlaTyrSerMetGlnTrpValAspLeuProAsnG : 368 |||||||||||||||||| !:!!||||||!!!:!!! ||| ! ! !||| . GlnSerGluAlaIleGlyArgAlaAlaTyrThrValProTrpHisTrpTyrPro---A 117786 : CAGAGCGAAGCGATCGGTCGTGCAGCCTATACGGTGCCTTGGCATTGGTACCCT---C : 117840 369 : luPheIleMetLysAspLeuLysPheValMetAlaArgAlaAsnGlnProThrArgLe : 387 ..! !:!: ||| !!!..!.:!!||| !|||!.!.!.:!!|||..!||||| rgCysLeuArgLysProThrAsnMetLeuMetIleArgGlyGlnLysProValArgLe 117841 : GTTGCTTGCGAAAACCAACCAACATGCTGATGATCAGAGGTCAGAAACCGGTTCGTCT : 117897 388 : uThrAlaGlyLysLeuPheAspLeuSerLeuGlnGlyPheCysAspValAla : 404 |||||||||||||:!! !!! |||||||||:!! !|||..!..!|||:!! uThrAlaGlyLysIleValGlyLeuSerLeuGluThrPheAlaSerValSer 117898 : GACCGCCGGAAAAATCGTCGGACTCTCTCTGGAAACGTTTGCCTCTGTATCC : 117950 vulgar: NvOr2 348 404 . KQ414940.1 117785 117950 + 102 M 18 54 G 1 0 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 117786 117950 102 + . gene_id 2 ; sequence NvOr2 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 117786 117950 . + . KQ414940.1 exonerate:protein2genome:local exon 117786 117950 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 117786 117950 102 + . alignment_id 2 ; Query NvOr2 ; Align 117786 349 54 ; Align 117840 368 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr501PI Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 293 -> 352 Target range: 26746 -> 27635 294 : TyrAsnAlaProTrpTyrLeuAlaProLeuGlnIleGlnLysLeuIleLeuIleLeuLeu : 313 ||| !!!.! !|||||| !|||||| !!:! !|||||||||:!:|||:!::!!||| TyrTyrGlySerTrpTyrAlaAlaProThrArgAlaGlnLysLeuLeuLeuLeuValLeu 26747 : TATTACGGAAGCTGGTACGCGGCGCCAACGCGGGCACAAAAATTGCTGCTGCTGGTGTTG : 26804 314 : GlnArgSerAsnLysAlaPheThrLeuSerIleValGlyLeuPheThrIleSerLeuGlu : 333 |||!:!!!!! ! !!! !!:!|||||| !!.! !:!! !!||| !||||||:!! GlnLysCysMetValProCysSerLeuSerAlaAlaLysIleValThrAlaSerLeuGln 26805 : CAGAAATGCATGGTGCCTTGTAGTTTATCGGCCGCTAAAATTGTCACCGCATCGCTGCAA : 26864 334 : CysPheAlaSer >>>> Target Intron 1 >>>> LeuAlaSerThrSerIleS : 344 !!:!|||!!! 712 bp :!!!.!..!||||||:!!| IleTyrAlaThr++ ++IleValGlnThrSerValS 26865 : ATCTATGCTACGgt.........................agATCGTCCAGACGTCGGTAT : 27609 345 : erTyrPheThrLeuMetLeuSerLeu : 352 ||||||||:!!:!!:!!! !:!!||| erTyrPheSerValLeuTyrAlaLeu 27610 : CTTACTTCTCTGTGCTGTACGCGCTG : 27635 vulgar: CbirOr501PI 293 352 . KQ415081.1 26746 27635 + 108 M 44 132 5 0 2 I 0 708 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 26747 27635 108 + . gene_id 1 ; sequence CbirOr501PI ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 26747 26878 . + . KQ415081.1 exonerate:protein2genome:local exon 26747 26878 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 26879 26880 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 26879 27590 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 27589 27590 . + . intron_id 0 ; splice_site "aG" KQ415081.1 exonerate:protein2genome:local cds 27591 27635 . + . KQ415081.1 exonerate:protein2genome:local exon 27591 27635 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 26747 27635 108 + . alignment_id 1 ; Query CbirOr501PI ; Align 26747 294 132 ; Align 27591 338 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr498 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 131 -> 212 Target range: 32500 -> 32743 132 : SerIlePheLeuPheIleLeuSerGlnValCysProAsnIlePheAspIleIleLeuPro : 151 .!!||||||! !!:! !:!! !||| !! ||| !!|||.!!|||:!:||| !||| GlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaPro 32501 : GGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCT : 32558 152 : IleAsnLysSerArgHisTyrArgMetGlnPheIleValGluTyrPheIleAspGlnLys : 171 :!!|||:!!|||||||||:!! !:!!! !!:! !! !|||||||||:!!||||||::: LeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGln 32559 : CTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaa : 32618 172 : LysTyrPhePhePheLeuLeuLeuHisMetAspThrAlaPheLeuLeuAlaGlyIleVal : 191 |||||||||... :!! !||||||||| ! !.!! !! !|||!.! !! ||| LysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrVal 32619 : aaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTC : 32678 192 : ThrLeuAlaIleGlyLeuLeuIleMetGlyTyrIleGlnTyrIleCysGlyIlePheAsn : 211 .!! !|||::: :::...::: :::::: :!!:!!|||!.!! !|||||| AlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsn 32679 : GCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAAT : 32738 212 : Ile : 212 ||| Ile 32739 : ATT : 32743 vulgar: CbirOr498 131 212 . KQ415081.1 32500 32743 + 157 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32501 32743 157 + . gene_id 1 ; sequence CbirOr498 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32501 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32501 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32501 32743 157 + . alignment_id 1 ; Query CbirOr498 ; Align 32501 132 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr498 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 131 -> 212 Target range: 22053 -> 22296 132 : SerIlePheLeuPheIleLeuSerGlnValCysProAsnIlePheAspIleIleLeuPro : 151 .!!||| ||||||:!! !:!! !:!! |||! !:!!.!. !! !|||! !||| GlyIleGlyLeuPheValThrAlaThrLeuLeuProIleValMetCysArgIleGlnPro 22054 : GGCATAGGACTTTTCGTTACAGCGACGCTTCTACCAATCGTAATGTGTAGAATACAGCCA : 22111 152 : IleAsnLysSerArgHisTyrArgMetGlnPheIleValGluTyrPheIleAspGlnLys : 171 !|||:!!|||!.! :!!! !!!:! !||| |||||||||...||||||:!! ArgAsnGluSerHisValHisThrIleProPheGlnGlyGluTyrPhePheAspGlnGlu 22112 : CGTAACGAATCTCACGTACACACTATTCCGTTTCAaggggaatattttttcgaccAAGAG : 22171 172 : LysTyrPhePhePheLeuLeuLeuHisMetAspThrAlaPheLeuLeuAlaGlyIleVal : 191 ||| !!.!. ! |||:!!:!!||||||||| !.!! !! !:!!.!! ! !:!! LysAsnMetValPheIleIleLeuHisMetIleLeuThrValThrIleThrHisCysIle 22172 : AAAAATATGGTGTTCATTATACTGCACATGATACTCACAGTTACAATCACACATTGCATT : 22231 192 : ThrLeuAlaIleGlyLeuLeuIleMetGlyTyrIleGlnTyrIleCysGlyIlePheAsn : 211 .!!:!! !! !! !:!!:!!:!::!:! !! ! !..!:!! !|||!.!:!:||| ! AlaValMetThrAspMetIleLeuLeuValLeuThrMetHisAlaCysAlaLeuPheAla 22232 : GCTGTAATGACTGATATGATTTTGCTAGTTTTAACCATGCATGCCTGTGCCTTGTTCGCT : 22291 212 : Ile : 212 :!! Val 22292 : GTT : 22296 vulgar: CbirOr498 131 212 . KQ415081.1 22053 22296 + 104 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 22054 22296 104 + . gene_id 2 ; sequence CbirOr498 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 22054 22296 . + . KQ415081.1 exonerate:protein2genome:local exon 22054 22296 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 22054 22296 104 + . alignment_id 2 ; Query CbirOr498 ; Align 22054 132 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr515 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 134 -> 214 Target range: 32503 -> 32743 135 : ValIleSerPheAsnMetLeuSerPheMetProTyrPheLeuSerAlaIleLeuHisIle : 154 :!!.!!|||!:! !!::!!..!|||:!!||||||.!!:!!..!!.!||| !! !:!! IlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeu 32504 : ATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTA : 32561 155 : AsnGluSerAsnHisProMetGlnLeuPheLeuThrGluTyrPheValAspGluGluLys : 174 |||||||||...|||! !:!:! !! !!:! ! !|||||||||||||||::::::||| AsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLys 32562 : AACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaa : 32621 175 : TyrPheTyrLeuIleLeuLeuHisThrAsnValAlaPheSerIleGlyGlyThrAlaPhe : 194 |||||| !||| !||||||! ! !! !.!! !!!!!:!!||| !|||!.! ! TyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAla 32622 : tatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCC : 32681 195 : AlaAlaThrGlyLeuMetLeuLeuSerTyrValGluHisSerCysGlyMetPheGlnIle : 214 .!!|||... :::...::: :::::! ||| !|||!.!! |||.!.||| ThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32682 : ACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32741 vulgar: CbirOr515 134 214 . KQ415081.1 32503 32743 + 142 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32504 32743 142 + . gene_id 1 ; sequence CbirOr515 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32504 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32504 32743 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32504 32743 142 + . alignment_id 1 ; Query CbirOr515 ; Align 32504 135 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr505PSE(F) Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 122 -> 211 Target range: 11232 -> 11496 123 : IleIleLeuThrLeuPheThrValCysCysLeuIleIleIleThrIleLeuProPheLeu : 142 :!!! :!! !!:!!! !:!! !! |||.!! !|||..!.!!|||! ! ||| ValThrIleProValSerSerCysLeuLeuLeuPheSerIleValPheLeuHisThrLeu 11233 : GTCACGATTCCAGTGTCCTCATGTTTGCTATTGTTCTCTATCGTCTTCTTGCATACGCTT : 11290 143 : ProTrpIlePheGlyThrPheLeuLeuAlaAsnGluSerArgProLeuHisAsnMetLeu : 162 !! ! ! !..!|||.!! !! ! !||||||!!!||| !:!!..!:!!:!! SerGlnThrThrAsnThrIleThrSerArgAsnGluThrArg---AlaAsnGlyLeuIle 11291 : TCGCAAACTACCAATACGATCACATCTCGAAACGAGACCAGA---GCTAATGGCTTGATA : 11347 163 : IleValThrGluTyrPheValAspLysGluLysIleValTyrLeuIleLeuLeuHisThr : 182 :!!:!!|||||||||||||||||| ! |||:!! !:!!|||! !||| ! !|||..! ValLeuThrGluTyrPheValAspTyrGluGlnTyrIleTyrProIleThrThrHisVal 11348 : GTTTTAACCGAATACTTCGTTGATTACGAGCAATACATTTATCCAATTACGACCCACGTG : 11407 183 : TyrAlaSerIleTyrIleGlyValThrAlaLeuValGlyGlyGlyMetMetLeuMetAla : 202 !!.!.!!|||!:!!!:||| !!.!! !! !:!!|||.!!! !:!::!! !||| ! ValValGlyIlePheMetGlyPheAlaIleGlnIleGlySerAspLeuLeuAsnMetIle 11408 : GTTGTAGGAATTTTTATGGGTTTTGCTATTCAAATTGGCAGCGATCTTTTGAATATGATA : 11467 203 : TyrLeuLysHisIleCysGlyLeuPhe : 211 !:!:!!! !|||:!! !!|||:!!||| PheMetMetHisValSerGlyMetPhe 11468 : TTTATGATGCACGTCAGTGGAATGTTC : 11496 vulgar: CbirOr505PSE(F) 122 211 . KQ415081.1 11232 11496 + 115 M 34 102 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 11233 11496 115 + . gene_id 1 ; sequence CbirOr505PSE(F) ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 11233 11496 . + . KQ415081.1 exonerate:protein2genome:local exon 11233 11496 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 11233 11496 115 + . alignment_id 1 ; Query CbirOr505PSE(F) ; Align 11233 123 102 ; Align 11335 158 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr505PSE(F) Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 122 -> 213 Target range: 32473 -> 32743 123 : IleIleLeuThrLeuPheThrValCysCysLeuIleIleIleThrIleLeuProPheLeu : 142 :::||| !||| !|||..! ! ! ! :!!.!! ! !.!!|||:!!! !|||||| LeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeu 32474 : ctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTG : 32531 143 : ProTrpIlePheGlyThrPheLeuLeuAlaAsnGluSerArgProLeuHisAsnMetLeu : 162 |||!::|||.!!! !..!.!. !! ! !||||||||||||! ! ||| :!!! ! ProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHis---HisValLeuPro 32532 : CCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACAC---CATGTACTGCCG : 32588 163 : IleValThrGluTyrPheValAspLysGluLysIleValTyrLeuIleLeuLeuHisThr : 182 !!.! !|||||||||||||||::::::||| !||| !||||||! ! TyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMet 32589 : TACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATG : 32648 183 : TyrAlaSerIleTyrIleGlyValThrAlaLeuValGlyGlyGlyMetMetLeuMetAla : 202 !!.!!!!:!! !:!!|||:!!|||!.! !..!!.!! :::...::: LeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhe 32649 : CTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattc : 32708 203 : TyrLeuLysHisIleCysGlyLeuPheSerIle : 213 :::::! |||:!!|||!.! !|||!:!||| PheMetPheHisValCysAlaLysPheAsnIle 32709 : ttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32743 vulgar: CbirOr505PSE(F) 122 213 . KQ415081.1 32473 32743 + 112 M 35 105 G 1 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32474 32743 112 + . gene_id 2 ; sequence CbirOr505PSE(F) ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32474 32743 . + . KQ415081.1 exonerate:protein2genome:local exon 32474 32743 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32474 32743 112 + . alignment_id 2 ; Query CbirOr505PSE(F) ; Align 32474 123 105 ; Align 32579 159 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr515 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 137 -> 215 Target range: 5005 -> 5239 138 : PheAsnMetLeuSerPheMetProTyrPheLeuSerAlaIleLeuHisIleAsnGluSerAs : 158 |||! ||| !!|||:!! !! .!!|||..! !:!!:!!! :!:||||||!!!.. PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5006 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5066 159 : nHisProMetGlnLeuPheLeuThrGluTyrPheValAspGluGluLysTyrPheTyrLeuI : 179 . ! !:!! :!!!:!! !.!! ! |||||||||||||||!!:|||||| !||||||| gAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuI 5067 : AGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGA : 5129 180 : leLeuLeuHisThrAsnValAlaPheSerIleGlyGlyThrAlaPheAlaAlaThrGlyLeu : 199 ||:!! !|||! ! !!:!!!.! ! !!!: ! !:!!!.!|||..!||| !! ! ! leValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 5130 : TCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 5189 200 : MetLeuLeuSerTyrValGluHisSerCysGlyMetPheGlnIleAla : 215 ! ! !:!!! ! !|||:!!|||:!!||||||:!!!!. |||||| AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla 5190 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCA : 5239 vulgar: CbirOr515 137 215 . LHQN01025741.1 5005 5239 + 112 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5006 5239 112 + . gene_id 1 ; sequence CbirOr515 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5006 5239 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5006 5239 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5006 5239 112 + . alignment_id 1 ; Query CbirOr515 ; Align 5006 138 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr515 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 137 -> 215 Target range: 5657 -> 5423 138 : PheAsnMetLeuSerPheMetProTyrPheLeuSerAlaIleLeuHisIleAsnGluSerAs : 158 |||! ||| !!|||:!! !! .!!|||..! !:!!:!!! :!:||||||!!!.. PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5657 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5597 159 : nHisProMetGlnLeuPheLeuThrGluTyrPheValAspGluGluLysTyrPheTyrLeuI : 179 . ! !:!! :!!!:!! !.!! ! |||||||||||||||!!:|||||| !||||||| gAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuI 5596 : AGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGA : 5534 180 : leLeuLeuHisThrAsnValAlaPheSerIleGlyGlyThrAlaPheAlaAlaThrGlyLeu : 199 ||:!! !|||! ! !!:!!!.! ! !!!: ! !:!!!.!|||..!||| !! ! ! leValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 5533 : TCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 5474 200 : MetLeuLeuSerTyrValGluHisSerCysGlyMetPheGlnIleAla : 215 ! ! !:!!! ! !|||:!!|||:!!||||||:!!!!. |||||| AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla 5473 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCA : 5424 vulgar: CbirOr515 137 215 . LHQN01028732.1 5657 5423 - 110 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5424 5657 110 - . gene_id 1 ; sequence CbirOr515 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5424 5657 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5424 5657 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5424 5657 110 - . alignment_id 1 ; Query CbirOr515 ; Align 5658 138 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr505PSE(F) Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 123 -> 213 Target range: 436 -> 703 124 : IleLeuThrLeuPheThrValCysCysLeuIleIleIleThrIleLeuProPheLeuProTrpI : 145 |||:!! !!:!!|||:!! !!! |||:!! !.!!..!.!!|||! !.!!|||||| | IleIleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuProGlnI 437 : ATTATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAA : 500 146 : lePheGlyThrPheLeuLeuAlaAsnGluSerArgProLeuHisAsnMetLeuIleValThrGl : 166 ||!!.|||! !.!!! !! ! !!.!|||! !!.! !:!!!!.:!:|||:!! !||||| leLeuGlyIleIleSerProLeuThrGluIleAsn---ThrAsnLysLeuLeuValArgThrGl 501 : TTTTAGGCATAATTTCACCTCTAACCGAGATCAAT---ACTAACAAATTACTCGTTCGAACCGA : 560 167 : uTyrPheValAspLysGluLysIleValTyrLeuIleLeuLeuHisThrTyrAlaSerIleTyr : 187 ||||||||||||| ! :!! ! !:!!||||||||| !:!!|||.!! ! !:!!||| uTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAlaThrIleAlaIleMet 561 : ATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCGACTATAGCAATAATG : 623 188 : IleGlyValThrAlaLeuValGlyGlyGlyMetMetLeuMetAlaTyrLeuLysHisIleCysG : 209 !.!!|||||| !! !:!!.!!.!!! !!::::: :::::!! !|||||| !!| CysSerValThrMetGlnIleSerSerAspIleLeuAsnAsnIlePheMetMetHisIleSerG 624 : TGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaataacatatttatGATGCACATCAGTG : 689 210 : lyLeuPheSerIle : 213 ||:!!|||..!:!! lyMetPheGluVal 690 : GAATGTTCGAGGTA : 703 vulgar: CbirOr505PSE(F) 123 213 . LHQN01050134.1 436 703 + 112 M 33 99 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 437 703 112 + . gene_id 1 ; sequence CbirOr505PSE(F) ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 437 703 . + . LHQN01050134.1 exonerate:protein2genome:local exon 437 703 . + . insertions 0 ; deletions 1 LHQN01050134.1 exonerate:protein2genome:local similarity 437 703 112 + . alignment_id 1 ; Query CbirOr505PSE(F) ; Align 437 124 99 ; Align 536 158 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: CbirOr515 Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 134 -> 214 Target range: 463 -> 703 135 : ValIleSerPheAsnMetLeuSerPheMetProTyrPheLeuSerAlaIleLeuHisIleAsnG : 156 :!!:!!.!!||| !.!.|||..!.!!:!:||| ! .!!|||.!! !|||! !! !:!!!.!| LeuLeuGlyPheValPheLeuGlnIleLeuProGlnIleLeuGlyIleIleSerProLeuThrG 464 : CTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAATTTTAGGCATAATTTCACCTCTAACCG : 527 157 : luSerAsnHisProMetGlnLeuPheLeuThrGluTyrPheValAspGluGluLysTyrPheTy : 177 ||! !||| ! !! !||| !!! !|||||||||||||||||| ! :!! ! |||.!!|| luIleAsnThrAsnLysLeuLeuValArgThrGluTyrPheValAspTyrLysAspTyrIleTy 528 : AGATCAATACTAACAAATTACTCGTTCGAACCGAATACTTTGTCGACTACAAAGATTACATTTA : 590 178 : rLeuIleLeuLeuHisThrAsnValAlaPheSerIleGlyGlyThrAlaPheAlaAlaThrGly : 198 ||||||| !:!!|||.!!!.!:!!|||.!.! ! !.!!! !||| ! !::!!:!! ! rLeuIleThrIleHisAlaThrIleAlaIleMetCysSerValThrMetGlnIleSerSerAsp 591 : TCTAATCACGATCCACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGAT : 653 199 : LeuMetLeuLeuSerTyrValGluHisSerCysGlyMetPheGlnIle : 214 :::::: :::::! !|||! ! !!|||||||||:!!:!! IleLeuAsnAsnIlePheMetMetHisIleSerGlyMetPheGluVal 654 : AttttgaataacatatttatGATGCACATCAGTGGAATGTTCGAGGTA : 703 vulgar: CbirOr515 134 214 . LHQN01050134.1 463 703 + 116 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 464 703 116 + . gene_id 1 ; sequence CbirOr515 ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 464 703 . + . LHQN01050134.1 exonerate:protein2genome:local exon 464 703 . + . insertions 0 ; deletions 0 LHQN01050134.1 exonerate:protein2genome:local similarity 464 703 116 + . alignment_id 1 ; Query CbirOr515 ; Align 464 135 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414601.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold45, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 151 Query range: 293 -> 402 Target range: 1068554 -> 1066752 294 : TyrPheIleThrGluPheGluGlnSerGluThrValGlyThrIleThrTyrSerLe : 312 :::...||| ::: :!!:!!.!. !|||||||||.!!|||||| !|| HisLeuIlePheGlnSerProGluAlaAsnLeuValGlyThrPheThrTyrValLe 1068554 : catttaatttttcagagtCCCGAAGCAAATCTCGTGGGCACGTTCACATACGTTTT : 1068500 313 : uLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyAspLeuL : 331 |! !:!!:!:! !:!!|||! :!!!:!:!:!:!! !:!||||||!!:! !| uTyrIleLeuLeuValThrSerLeuLeuTyrLeuTyrSerPheIleGlyGluArgL 1068499 : GTACATTTTGTTAGTCACGTCGTTGTTATACTTGTACTCGTTCATAGGTGAACGAT : 1068443 332 : euThrGluGln >>>> Target Intron 1 >>>> CysGluAsnIleGlyG : 340 ||.!! ! :!! 65 bp !!!.:!: !| euAlaTyrGlu++ ++SerThrLysValThrG 1068442 : TGGCATACGAGgt.........................agtCGACGAAAGTGACCG : 1068351 341 : luValAlaTyrMetIleAsnTrpTyrGlnPheSerGlyLysAspAlaArgAsnIle : 358 ||!.! !||| ! !.!.||| ! :!!!!.|||! !::::!! !!:! :!: luAlaTyrTyrAspThrGluTrpGlnGluLeuSerValArgAsnGlnLysLeuLeu 1068350 : AAGCGTACTATGATACCGAGTGGCAAGAATTATCGGTCCGTAATCAAAAGCTGTTG : 1068297 359 : IleLeuIleValAlaSerThrGlnArgProValValLeuThrAlaGlyLysMetVa : 377 :!!||| !:!! !||| !!:!||| !!:!! !|||||||||||||||:!! LeuLeuAlaMetArgSerGlyArgArgThrLeuTyrLeuThrAlaGlyLysValTy 1068296 : CTTCTTGCCATGCGTTCTGGACGAAGAACGTTATACCTTACAGCTGGAAAAGTGTA : 1068240 378 : lThrLeuSerIleArgSerPheCysAsn >>>> Target Intron 2 >>>> : 387 !!.!!!!|||:!: !.!!||| !:!! 1410 bp rAsnPheSerLeuTyrGlyPheIleHis++ + 1068239 : CAATTTCTCCTTGTACGGTTTTATCCATgt.........................a : 1066802 388 : ValIleLysAlaSerValThrTyrLeuAsnMetLeuArgThrLeuThr : 402 :!!!!:|||.!!||| !! !|||:!!::!:!:||||||||||||||| +IleMetLysThrSerPheGlyTyrValSerLeuLeuArgThrLeuThr 1066801 : gaTTATGAAAACCTCCTTCGGATACGTTTCTCTATTACGAACATTAACT : 1066753 vulgar: NvOr10 293 402 . KQ414601.1 1068554 1066752 - 151 M 41 123 5 0 2 I 0 61 3 0 2 M 52 156 5 0 2 I 0 1406 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414601.1 exonerate:protein2genome:local gene 1066753 1068554 151 - . gene_id 1 ; sequence NvOr10 ; gene_orientation + KQ414601.1 exonerate:protein2genome:local cds 1068432 1068554 . - . KQ414601.1 exonerate:protein2genome:local exon 1068432 1068554 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local splice5 1068430 1068431 . - . intron_id 1 ; splice_site "GT" KQ414601.1 exonerate:protein2genome:local intron 1068367 1068431 . - . intron_id 1 KQ414601.1 exonerate:protein2genome:local splice3 1068367 1068368 . - . intron_id 0 ; splice_site "ag" KQ414601.1 exonerate:protein2genome:local cds 1068211 1068366 . - . KQ414601.1 exonerate:protein2genome:local exon 1068211 1068366 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local splice5 1068209 1068210 . - . intron_id 2 ; splice_site "GT" KQ414601.1 exonerate:protein2genome:local intron 1066801 1068210 . - . intron_id 2 KQ414601.1 exonerate:protein2genome:local splice3 1066801 1066802 . - . intron_id 1 ; splice_site "ag" KQ414601.1 exonerate:protein2genome:local cds 1066753 1066800 . - . KQ414601.1 exonerate:protein2genome:local exon 1066753 1066800 . - . insertions 0 ; deletions 0 KQ414601.1 exonerate:protein2genome:local similarity 1066753 1068554 151 - . alignment_id 1 ; Query NvOr10 ; Align 1068555 294 123 ; Align 1068367 335 156 ; Align 1066801 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 316 -> 387 Target range: 204721 -> 204934 317 : LeuThrPheAsnIlePheIlePheCysTyrIleGlyAspLeuLeuThrGluGlnCysG : 336 ||| ||| :::::! !!!. ...... |||:!! !:!!! !| LeuPhePheProLeuTyrTyrLeuSerSerPheSerIleSerLeuSerIleLysSerG 204722 : cttttctttcctctatACTACTTgtcttcattttcaatttctttgtCGATAAAGTCCG : 204779 337 : luAsnIleGlyGluValAlaTyrMetIleAsnTrpTyrGlnPheSerGlyLysAspAl : 355 ||.!.:!! !! !.!|||||| !.!.|||! .!.!!.!.!..!!!. ! || luGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsnLysAl 204780 : AAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAACAAGGC : 204836 356 : aArgAsnIleIleLeuIleValAlaSerThrGlnArgProValValLeuThrAlaGly : 374 |!:!!:!:!:|||||||||:!!|||!!!.!!|||||||||:!! !|||||||||||| aLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuThrAlaGly 204837 : GAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGcagga : 204893 375 : LysMetValThrLeuSerIleArgSerPheCysAsnVal : 387 |||::: ::!!!!!!:! !!!!|||||||||||| LysLeuPheProMetThrMetLeuThrPheCysAsnVal 204894 : aaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: NvOr10 316 387 . KQ414617.1 204721 204934 + 118 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204722 204934 118 + . gene_id 1 ; sequence NvOr10 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204722 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204722 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204722 204934 118 + . alignment_id 1 ; Query NvOr10 ; Align 204722 317 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 320 -> 389 Target range: 204727 -> 204934 321 : PheAsnIlePheIleLeuCysTyrIleGlyGlnValLeuThrGluLysCysGluSerI : 340 ||| :::::! !||| ...... |||:!! !|||! !|||..!: PheProLeuTyrTyrLeuSerSerPheSerIleSerLeuSerIleLysSerGluGluV 204728 : tttcctctatACTACTTgtcttcattttcaatttctttgtCGATAAAGTCCGAAGAAG : 204785 341 : leAlaLysAlaAlaTyrThrThrLysTrpTyrGlnLeuThrGlyLysGluAlaArgSe : 359 !! ! ||||||||| ! !:!!|||! .!.|||! !..!!!.:!!|||!:!|| alTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsnLysAlaLysSe 204786 : TATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAACAAGGCGAAAAG : 204842 360 : rIleValPheIleValSerCysAsnHisArgProValGluLeuThrAlaGlyLysLeu : 378 |:!::!!!!.|||:!!:!! ! !!!.||||||:!! |||||||||||||||||| rLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuThrAlaGlyLysLeu 204843 : TTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGcaggaaaatta : 204899 379 : LeuLysLeuSerLeuAsnSerPheSerSerIle : 389 ... ::!!!!:!! !!!|||!!!!:!:!! PheProMetThrMetLeuThrPheCysAsnVal 204900 : tttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: NvOr7 320 389 . KQ414617.1 204727 204934 + 106 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204728 204934 106 + . gene_id 1 ; sequence NvOr7 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204728 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204728 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204728 204934 106 + . alignment_id 1 ; Query NvOr7 ; Align 204728 321 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr15 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 86 -> 231 Target range: 203786 -> 204218 87 : HisValGlyIleAlaTyrAsnAsnLysValLeuTyrLysLeuLeuTyrLeuIleSerG : 106 :!!||| !||||||! ! ! ! !!||||||! !|||:!! !!:!!|||:!!| TyrValHisIleAlaSerPheLeu***ValLeuLeuProLeuValAsnMetIleAlaG 203787 : TATGTACATATCGCTTCTTTCCTTTAAGTTCTCTTGCCACTCGTAAACATGATCGCGG : 203844 107 : luAspTrpLysGluValThrLysGluSerGluLysLysValMetTrpGlnLysAlaAr : 125 |||||||| !:!!:!!! !! !!!:! !|||!:! ! |||||| |||::!.!!|| luAspTrpAlaLysLeuLysThrAspPheGluArgAspValMetIleGlnArgThrAr 203845 : AAGATTGGGCAAAGTTGAAAACGGATTTCGAAAGAGACGTGATGATACAACGAACACG : 203901 126 : gLeuSerArgIlePheThrMetIleGluValSerLeuGlyLeuGlyArgLeuPheIle : 144 |:!!!!!||| ! !!:!!!::!:... !:!!||| !!!! ! !:!!.!..!! gIleThrArgAlaThrSerIleLeuSerTyrAlaLeuIlePheThrAlaValMetPhe 203902 : AATTACCCGAGCAACCAGTATACTGAGTTATGCGTTAATATTTACTGCAGTAATGTTC : 203958 145 : HisThrIleArgMetThrTyrAlaMetLeuHisProThrSerPheAspProThrGlyL : 164 ! !:!!! ! ! ! !!.!!!: ! ! ! ! ! :!! !||| ! MetIleValLeuProArgThrGlyIleThrThrArgTyrValThrAsnGluThr---A 203959 : ATGATAGTCCTACCAAGAACCGGTATTACCACTAGATACGTAACAAACGAAACC---A : 204015 165 : ysLeuIleArgProSerTyrMetArgGlyTyrPheIleTyrAspSerGlnSerThrPr : 183 !.:!!! !!:!! !! ! :!!! |||:::||||||||| .....!||||| snIleLysLysLeuPheProValProThrTyrTyrIleTyrAspIleSerGluThrPr 204016 : ACATAAAAAAGCTTTTTCCGGTGCCaacttattatatttacgatataTCTGAAACTCC : 204072 184 : oIleTyrGluIleThrTrpGlyCysGlnPheValAlaThrAlaPheGlyGlyCysAla : 202 | !!:!||||||! !!:: ! !|||.!.!.!.!! !!.!!!. !!.! !..! oTyrPheGluIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCys 204073 : ATATTTTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGT : 204129 203 : PheAlaSerAlaAspAlaLeuPheValAlaLeuValPheHisLeuCysGlyGlnLeuT : 222 !:! !.!!!.!||| !!!!|||! ! !|||:!!.!!|||:!!|||||||||||| TyrIleGlyValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuG 204130 : TACATTGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGG : 204189 223 : hrAsnLeuGlnThrGluPheArgGluVal : 231 !||||||!::|||..!.!! !.!.:!! luAsnLeuArgThrArgLeuAlaAsnIle 204190 : AAAATCTTCGTACACGACTTGCAAACATA : 204218 vulgar: NvOr15 86 231 . KQ414617.1 203786 204218 + 137 M 76 228 G 1 0 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203787 204218 137 + . gene_id 1 ; sequence NvOr15 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203787 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 203787 204218 . + . insertions 0 ; deletions 1 KQ414617.1 exonerate:protein2genome:local similarity 203787 204218 137 + . alignment_id 1 ; Query NvOr15 ; Align 203787 87 228 ; Align 204015 164 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr11FIX Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 346 -> 404 Target range: 204760 -> 204934 347 : LysLeuArgGluLysSerValAspIleSerAspAlaAlaTyrGlnCysAspTrpTyrA : 366 ...||| ! !||||||! !!!::!!! !! !|||||||||:!!|||!!:|||! : SerLeuSerIleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuA 204761 : tctttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGA : 204818 367 : spLeuThrProGlnGlnSerLysGlnLeuIleIleIleMetLeuArgAlaArgArgPr : 385 !!|||! ! !!.!.:!!:!!|||...||||||:!!|||||| !||||||!:!||||| snLeuLysSerAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgPr 204819 : ATTTGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCC : 204875 386 : oLeuGlnValThrAlaGlyLysPheValAlaPheSerLeuSerLeuTyrCysSerIle : 404 |||| :!!||||||||||||... ...!!!:!! ! !!:!|||!:!:!! oLeuCysLeuThrAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsnVal 204876 : GCTCTGTTTAACCGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204932 vulgar: NvOr11FIX 346 404 . KQ414617.1 204760 204934 + 131 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204761 204934 131 + . gene_id 1 ; sequence NvOr11FIX ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204761 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204761 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204761 204934 131 + . alignment_id 1 ; Query NvOr11FIX ; Align 204761 347 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr11FIX Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 118 -> 256 Target range: 203813 -> 204221 119 : AlaLeuArgLysLeuMetIleGlnIleThrAsnAspTrpArgSerProHisGlyProI : 138 !.!||| ! !|||:!:! !..!|||.!!.!.|||||| !!.! ! ! ! !. ValLeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspP 203814 : GTTCTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATT : 203871 139 : leGluLeuGluIleMetGluGluAsnAlaArgPheSerArgLeuValSerAlaThrCy : 157 !!||| !!!::!:||| !:!!....!!|||.!!!!!||| !..!||| ! ! ! heGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSe 203872 : TCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAG : 203928 158 : sIlePheLeuAlaAspAlaThrPheAlaAlaGlnPheIleIleAlaValLeuArgIle : 176 ! ! ||| ! !.!! |||!.!..!|||!!:|||!.!:!!! !|||! ! rTyrAlaLeuIlePheThr------AlaValMetPheMetIleValLeuProArgThr 203929 : TTATGCGTTAATATTTACT------GCAGTAATGTTCATGATAGTCCTACCAAGAACC : 203979 177 : AspAlaGlnAsnArgLeuGlnAlaAsnGlyThrAspIleAspArgProLeuTyrMetA : 196 ! ! ! !.!|||! ! !.!!|||! !|||:!!||| ! !:!! !!!! :!!! GlyIleThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValP 203980 : GGTATTACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGC : 204039 197 : rgAlaSerPheProTyrAspSerGlnIleSerProAsnTyrGluLeuThrLeuAlaGl : 215 ... ::: |||||| ... !!!!||| !!!:!|||:!!! !!!! ! roThrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLe 204040 : CaacttattatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCT : 204096 216 : yGlnLeuPheSerAsnPhePheAlaAlaThrThrTyrThrSerIleAspSerLeuPhe : 234 !|||:!! !!!! ! !!. !||| ! !|||! !.!!:!!|||!:!!!!||| uGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePhe 204097 : TCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTT : 204153 235 : IleValLeuMetLeuHisLeuCysGlyGlnLeuSerValLeuArgLeuLysPheProG : 254 !:!!|||!!:||||||:!!||||||||||||..! !|||||| !::!.!! !!. GlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaA 204154 : GGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAA : 204213 255 : lyLeuLys : 256 .!:!!||| snIleLys 204214 : ACATAAAA : 204221 vulgar: NvOr11FIX 118 256 . KQ414617.1 203813 204221 + 130 M 45 135 G 2 0 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203814 204221 130 + . gene_id 2 ; sequence NvOr11FIX ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203814 204221 . + . KQ414617.1 exonerate:protein2genome:local exon 203814 204221 . + . insertions 0 ; deletions 2 KQ414617.1 exonerate:protein2genome:local similarity 203814 204221 130 + . alignment_id 2 ; Query NvOr11FIX ; Align 203814 119 135 ; Align 203949 166 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr14 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 94 -> 222 Target range: 203813 -> 204209 95 : ValLeuLysGlyLeuValIleLeuMetMetGluAspTrpSerArgSerTyrSerSerS : 114 |||||| ! !||||||! !:!!!!: !|||||||||:!!!:!! ! ! !!!..!! ValLeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspP 203814 : GTTCTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATT : 203871 115 : erAsnLeuAspSerMetTrpArgThrAlaArgPheSerArgLysLeuSerAlaValCy : 133 !.!. !||| !||| !:! !.!!|||.!!!!!||| ! !||| !:!! ! heGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSe 203872 : TCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAG : 203928 134 : sIleGlyLeuAlaGlnGlyThrIleThrAlaGlnPheIleMet<-><-><-><->Val : 148 ! !!.!||| ! !.!!:!!! ! !..!.!.:!!:!: :!! rTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIle 203929 : TTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATT : 203985 149 : ValValPheAspValAsnAsnLysGlyGluAlaGluArgThrLeuTyrMetIleSerT : 168 ..!..! !!|||!..|||:!! !.!. !:!!!:! !!!! :!! :::| ThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrT 203986 : ACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaactt : 204045 169 : yrPheProTyrAspThrGlnValSerProAsnTyrGluIleThrTrpLeuGlyGlnCy : 187 ||::: |||||| ...! !!!!||| !!!:!||||||! !!::||| !||| yrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMe 204046 : attatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAAT : 204102 188 : sPheSerAsnIlePheAlaAlaGlyAlaPheSerAlaValAspAlaPhePheAlaVal : 206 !!!! :!:!!. !||| !..!!:!! !!.!|||||| !||||||!.!:!! tAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIle 204103 : GGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATA : 204159 207 : LeuValLeuHisLeuCysCysGlnLeuSerIleLeuArgLysGluLeu : 222 |||:!!||||||:!!||| !!||||||..!! !||||||! !..!||| LeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeu 204160 : TTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTT : 204209 vulgar: NvOr14 94 222 . KQ414617.1 203813 204209 + 116 M 53 159 G 0 12 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203814 204209 116 + . gene_id 1 ; sequence NvOr14 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203814 204209 . + . KQ414617.1 exonerate:protein2genome:local exon 203814 204209 . + . insertions 12 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203814 204209 116 + . alignment_id 1 ; Query NvOr14 ; Align 203814 95 159 ; Align 203985 148 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr16 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 95 -> 236 Target range: 203813 -> 204218 96 : ValLeuGlyLeuLeuIleMetAlaMetGluAsnAspTrpLysSerLeuLysThrValP : 115 |||||| !! !|||:!!! !!!:! !.!.|||||| !!.!|||||||||! !| ValLeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspP 203814 : GTTCTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATT : 203871 116 : heGluLeuArgValMetTrpLysAsnValLysLeuGlyArgLeuIleThrLeuAlaIl : 134 ||||| ! !|||||| :!!.....!::! ||||||! !|||! heGluArgAspValMetIleGlnArgThrArg------------IleThrArgAlaTh 203872 : TCGAAAGAGACGTGATGATACAACGAACACGA------------ATTACCCGAGCAAC : 203916 135 : eTyrLeuLeuThrTyrSerThrValAlaThrTyrValValMetAlaValTyrIleThr : 153 ! !:!!|||!:!|||:!! !:!! !||| |||:!!.!. !:!! !:!! !! rSerIleLeuSerTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuPro 203917 : CAGTATACTGAGTTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCA : 203973 154 : AlaAsnAlaTyrLysGlnGluPheIleLeuThrProAspAsnSerThrLysLeuArgP : 173 !!.!!.! !! ..!!:!:!! !!.! ! !|||! !! !|||||| !| ArgThrGlyIleThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheP 203974 : AGAACCGGTATTACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTC : 204033 174 : roGlnTyrMetArgAlaHisPheAlaTyrAspValGlnLysSerProValTyrGluIl : 192 || :!!! ...:::::: ||||||:::...:!!!!!||| !!:!||||| ro------ValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluIl 204034 : CG------GTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTGAGAT : 204084 193 : eValTrpIlePheGlnCysIleAlaMetHisLeuAlaGlyLeuSerPheMetAlaIle : 211 |:!!!:::!!.!!||| !.!!:!: ||| !!.!|||!!!!:!!!:!.!:!! eMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyVal 204085 : AATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTC : 204141 212 : AspSerLeuPheSerIleLeuValLeuHisLeuCysGlyGlnLeuIleAsnLeuGlnG : 231 |||!:!!!!|||.!!||||||:!!||||||:!!|||||||||||| !||||||!:: AspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgT 204142 : GATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTA : 204201 232 : luArgLeuLysAsnVal : 236 !|||||| !|||:!! hrArgLeuAlaAsnIle 204202 : CACGACTTGCAAACATA : 204218 vulgar: NvOr16 95 236 . KQ414617.1 203813 204218 + 172 M 30 90 G 4 0 M 44 132 G 2 0 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203814 204218 172 + . gene_id 1 ; sequence NvOr16 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203814 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 203814 204218 . + . insertions 0 ; deletions 6 KQ414617.1 exonerate:protein2genome:local similarity 203814 204218 172 + . alignment_id 1 ; Query NvOr16 ; Align 203814 96 90 ; Align 203904 130 132 ; Align 204036 176 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr12 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 165 -> 239 Target range: 204005 -> 204227 166 : AsnGluSerLysLysLeuArgProLeuTyrMetArgSerTyrPheIleTyrAspValG : 185 ||||||!!!!!.! ! !!:!! !!!! :!!! :::|||:::|||||||||:::. AsnGluThrAsnIleLysLysLeuPheProValProThrTyrTyrIleTyrAspIleS 204006 : AACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttattatatttacgatataT : 204063 186 : lnLysThrProValTyrGluIleIleTrpIlePheGlnPheValSerMetGlyValAl : 204 ..:!!|||||| !!:!||||||!!:!:::!!.!!|||.!.!.!!!!:!:! !:!! erGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMe 204064 : CTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAAT : 204120 205 : aThrPheThrPheMetAlaValAspSerLeuPheAlaValLeuMetMetHisLeuCys : 223 !.!!.!! !!:!!!:!.!||||||!:!!!!|||!.!:!!|||!!::!:|||:!!||| tAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeuIleLeuHisIleCys 204121 : GGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGC : 204177 224 : GlyGlnLeuIleAsnLeuGlnGluArgLeuLysAsnPheThrAsnMet : 239 ||||||||| !||||||!:: !|||||| !|||.!.! !:!!:!! GlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysHisLeu 204178 : GGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAACATTTG : 204227 vulgar: NvOr12 165 239 . KQ414617.1 204005 204227 + 153 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204006 204227 153 + . gene_id 1 ; sequence NvOr12 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204006 204227 . + . KQ414617.1 exonerate:protein2genome:local exon 204006 204227 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204006 204227 153 + . alignment_id 1 ; Query NvOr12 ; Align 204006 166 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 335 -> 387 Target range: 1387622 -> 1387778 336 : GluAsnIleGlyGluValAlaTyrMetIleAsnTrpTyrGlnPheSerGlyLysAs : 354 |||..!||| !:!! ...||| ... ||||||.!..!.!.! !::!!! GluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProArgGl 1387623 : gAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCGAGA : 1387677 355 : pAlaArgAsnIleIleLeuIleValAlaSerThrGlnArgProValValLeuThrA : 373 :|||||| ::::::||||||::: :!!|||!:! !:!!:!!||||||| uAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuThrA 1387678 : AGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCACTG : 1387734 374 : laGlyLysMetValThrLeuSerIleArgSerPheCysAsnVal : 387 ||||||||.!.|||!.!||||||:!: !:!!|||..!|||||| laGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387735 : CGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: NvOr10 335 387 . KQ414716.1 1387622 1387778 + 114 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387623 1387778 114 + . gene_id 1 ; sequence NvOr10 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387623 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387623 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387623 1387778 114 + . alignment_id 1 ; Query NvOr10 ; Align 1387623 336 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 334 -> 400 Target range: 1387622 -> 1387955 335 : GluSerIleGlyThrThrAlaTyrMetIleArgTrpTyrHisLeuSerGlyLysGl : 353 ||| !!||| ! !:!:...||| ... |||||| !!|||!.! !::!|| GluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProArgGl 1387623 : gAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCGAGA : 1387677 354 : uAlaArgAsnValValLeuIleIleAlaSerThrGlnArgProValValMetThrA : 372 ||||||| |||:::||||||||| :!!|||!:! !:!!:!!:!:|||| uAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuThrA 1387678 : AGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCACTG : 1387734 373 : laGlyLysMetValAsnLeuSerLeuGlnSerPheThrAsn >>>> Target I : 386 ||||||||.!.||||||||||||||| :!!|||.!!||| 135 laGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387735 : CGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt............. : 1387778 387 : ntron 1 >>>> ValIleLysAlaSerAlaSerTyrLeuAsnMetLeuArgThr : 399 bp ::::!!||||||||||||||||||:!!::!:!:|||!.!.!! ++MetLeuLysAlaSerAlaSerTyrValSerValLeuHisAla 1387779 : ............agatgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTTGCATGCA : 1387950 400 : Val : 400 :!! Met 1387951 : ATG : 1387955 vulgar: NvOr9 334 400 . KQ414716.1 1387622 1387955 + 146 M 51 153 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387623 1387955 146 + . gene_id 1 ; sequence NvOr9 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387623 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387623 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387623 1387955 146 + . alignment_id 1 ; Query NvOr9 ; Align 1387623 335 153 ; Align 1387911 386 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 334 -> 400 Target range: 1402438 -> 1402805 335 : GluSerIleGlyThrThrAlaTyrMetIleArgTrpTyrHisLeuSerGlyLysGl : 353 :!! !||||||!.!||||||||| .!!! !|||||| !!||| !!..!! || GlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGl 1402439 : CAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGA : 1402493 354 : uAlaArgAsnValValLeuIleIleAlaSerThrGlnArgProValValMetThrA : 372 |::!!:! !:!!:!!! !:!!||| !!!!:!!|||!:! ! !!..!...||| uSerGlnLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrP 1402494 : AAGCCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACGTttactt : 1402550 373 : laGlyLysMetValAsnLeuSerLeuGlnSerPheThrAsn >>>> Target I : 386 ||||||... :::|||||||||:!!||||||||| ! 169 heGlyLysPheSerSerLeuSerLeuGluSerPheThrAla++ 1402551 : ttggaaaattttcaagtctCTCCTTGGAAAGCTTTACGGCCgt............. : 1402594 387 : ntron 1 >>>> ValIleLysAlaSerAlaSerTyrLeuAsnMetLeuArgThr : 399 bp :!!!!:|||!.!||||||||||||:!!::::!:|||! !.!! ++IleMetLysValSerAlaSerTyrIleSerValLeuLeuAla 1402595 : ............agATCATGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCA : 1402800 400 : Val : 400 ||| Val 1402801 : GTG : 1402805 vulgar: NvOr9 334 400 . KQ414716.1 1402438 1402805 + 119 M 51 153 5 0 2 I 0 165 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1402439 1402805 119 + . gene_id 2 ; sequence NvOr9 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1402439 1402591 . + . KQ414716.1 exonerate:protein2genome:local exon 1402439 1402591 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1402592 1402593 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1402592 1402760 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1402759 1402760 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402761 1402805 . + . KQ414716.1 exonerate:protein2genome:local exon 1402761 1402805 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1402439 1402805 119 + . alignment_id 2 ; Query NvOr9 ; Align 1402439 335 153 ; Align 1402761 386 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr12 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 328 -> 408 Target range: 1402408 -> 1402817 329 : TyrIleAlaGluIleLeuArgIleGluSerMetGluIleGlyAsnAlaAlaTyrHi : 347 |||::: !!!!||| ! !!|||... !|||||||||.!!||||||.! TyrLeuLysCysCysPheArgHis***SerGlnLeuIleGlyAsnThrAlaTyrGl 1402409 : tatttaaaatgttGCTTTCGTCATTAGAGCCAACTAATCGGCAATACGGCGTATGA : 1402463 348 : sCysAspTrpTyrAspLeuSerAlaPheGluArgArgLeuPheIleLeuThrIleI : 366 .! ! !|||||||||||| !!:!! !|||!!!!:!|||.!.|||! !..!|||: uPheLeuTrpTyrAspLeuArgSerThrGluSerGlnLeuLeuIleProValIleL 1402464 : ATTTCTTTGGTACGATTTACGTTCAACTGAAAGCCAACTTCTAATACCTGTAATAT : 1402520 367 : leArgSerLysThrProPheGluIleThrAlaGlyLysPheAlaAlaPheSerLeu : 384 !:||||||:!!! ! !||| !...||| |||||||||::::::..!|||||| euArgSerGlnLysGlyPheThrPheThrPheGlyLysPheSerSerLeuSerLeu 1402521 : TGAGGTCTCAAAAGGGTTTCACGTttacttttggaaaattttcaagtctCTCCTTG : 1402574 385 : GluPhe{T} >>>> Target Intron 1 >>>> {yr}CysSerIleLeuLy : 392 ||| !{|} 169 bp {||}! ! !|||:!!|| GluSer{T}-+ +-{yr}Leu***IleMetLy 1402575 : GAAAGC{T}tt.........................at{AT}TTATAGATCATGAA : 1402767 393 : sThrSerGlyGlyTyrLeuSerValLeuLeuAlaValGlnAspArgLeu : 408 |..!|||!.!..!|||:!!|||||||||||||||||| ! |||:!! sValSerAlaSerTyrIleSerValLeuLeuAlaValTyr***ArgIle 1402768 : AGTCTCAGCATCATATATATCAGTACTTCTTGCAGTGTATTGAAGAATC : 1402817 vulgar: NvOr12 328 408 . KQ414716.1 1402408 1402817 + 126 M 58 174 S 0 1 5 0 2 I 0 165 3 0 2 S 1 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1402409 1402817 126 + . gene_id 1 ; sequence NvOr12 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1402409 1402583 . + . KQ414716.1 exonerate:protein2genome:local exon 1402409 1402583 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1402584 1402585 . + . intron_id 1 ; splice_site "TT" KQ414716.1 exonerate:protein2genome:local intron 1402584 1402752 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1402751 1402752 . + . intron_id 0 ; splice_site "AT" KQ414716.1 exonerate:protein2genome:local cds 1402753 1402817 . + . KQ414716.1 exonerate:protein2genome:local exon 1402753 1402817 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1402409 1402817 126 + . alignment_id 1 ; Query NvOr12 ; Align 1402409 329 174 ; Align 1402755 388 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr12 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 337 -> 390 Target range: 1395323 -> 1395482 338 : SerMetGluIleGlyAsnAlaAlaTyrHisCysAspTrpTyrAspLeuSerAlaPh : 356 |||:!:..!|||.!!|||||||||||| !! !|||||| !|||..! !! SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 357 : eGluArgArgLeuPheIleLeuThrIleIleArgSerLysThrProPheGluIleT : 375 !!:|||!.!:!!.!!|||||| !!!:|||||||||:!!! !! !!!. !|||| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 376 : hrAlaGlyLysPheAlaAlaPheSerLeuGluPheTyrCysSerIle : 390 |||||||||||||| !! !!!.||||||||| !!:!...!:!:!! hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnVal 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTA : 1395482 vulgar: NvOr12 337 390 . KQ414716.1 1395323 1395482 + 113 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395482 113 + . gene_id 2 ; sequence NvOr12 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395482 113 + . alignment_id 2 ; Query NvOr12 ; Align 1395324 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr15 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 330 -> 383 Target range: 1387619 -> 1387778 331 : SerLeuAlaLeuSerSerAlaIlePheAspAsnThrTrpTyrAspLeuProProLy : 349 ||| ! !:!!!!!..!:!:::::::::: |||||||||||| !|||:: SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 350 : sHisAlaLysLeuLeuLeuLeuProLeuGlnArgThrGlyLysProLeuIleValT : 368 !.!.|||:::::::::|||||| ::: |||:!! !||| !||||||:!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 369 : hrAlaGlyLysPheValValPheSerLeuAsnLeuPheSerAsnIle : 383 ||||||||||||||||| !.!!|||||| ! !|||:!!|||::: hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: NvOr15 330 383 . KQ414716.1 1387619 1387778 + 122 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387778 122 + . gene_id 1 ; sequence NvOr15 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387778 122 + . alignment_id 1 ; Query NvOr15 ; Align 1387620 331 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr15 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 330 -> 383 Target range: 1395323 -> 1395482 331 : SerLeuAlaLeuSerSerAlaIlePheAspAsnThrTrpTyrAspLeuProProLy : 349 ||||||:!!:!!|||!:!||| !!:!..!::: !!|||||| !||| !|||:! SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 350 : sHisAlaLysLeuLeuLeuLeuProLeuGlnArgThrGlyLysProLeuIleValT : 368 ! !! ! ! :!!:!!:!!|||! !:!! !|||:!! !!:!! !|||! !:!!| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 369 : hrAlaGlyLysPheValValPheSerLeuAsnLeuPheSerAsnIle : 383 ||||||||||||||:!!! !!!.||||||.!. !|||:!!|||:!! hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnVal 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTA : 1395482 vulgar: NvOr15 330 383 . KQ414716.1 1395323 1395482 + 104 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395482 104 + . gene_id 2 ; sequence NvOr15 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395482 104 + . alignment_id 2 ; Query NvOr15 ; Align 1395324 331 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr11FIX Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 351 -> 415 Target range: 1395323 -> 1395515 352 : SerValAspIleSerAspAlaAlaTyrGlnCysAspTrpTyrAspLeuThrProGl : 370 |||:!!...||||||:!!|||||||||...! !|||||| !||| !||||| SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 371 : nGlnSerLysGlnLeuIleIleIleMetLeuArgAlaArgArgProLeuGlnValT : 389 |.!.!!! ! :!!|||:!!:!!|||:!!|||:!!!:!|||! !||| !:!!| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 390 : hrAlaGlyLysPheValAlaPheSerLeuSerLeuTyrCysSerIleLeuLysSer : 407 ||||||||||||||:!!! !!!.||||||..! !!:!...!:!:!! ! ! ! hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnValSerLeuLeu 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTAAGTCTACTT : 1395489 408 : SerGlyGlyTyrMetSerMetLeu : 415 ! !..! ! !||| !|||||| PheSerTyrValMetHisMetLeu 1395490 : TTTTCTTATGTTATGCATATGCTA : 1395515 vulgar: NvOr11FIX 351 415 . KQ414716.1 1395323 1395515 + 121 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395515 121 + . gene_id 1 ; sequence NvOr11FIX ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395515 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395515 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395515 121 + . alignment_id 1 ; Query NvOr11FIX ; Align 1395324 352 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr11FIX Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 351 -> 404 Target range: 1387619 -> 1387778 352 : SerValAspIleSerAspAlaAlaTyrGlnCysAspTrpTyrAspLeuThrProGl : 370 ||| ! !|||!!!.!.:!:...|||... ||||||||||||! !|||!: SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 371 : nGlnSerLysGlnLeuIleIleIleMetLeuArgAlaArgArgProLeuGlnValT : 389 !:!!:!!::: :::::::::|||:::||||||:!!!:!!:! !||| !:!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 390 : hrAlaGlyLysPheValAlaPheSerLeuSerLeuTyrCysSerIle : 404 ||||||||||||||||| !.!!||||||:!! !!:!..!!::::: hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: NvOr11FIX 351 404 . KQ414716.1 1387619 1387778 + 111 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387778 111 + . gene_id 2 ; sequence NvOr11FIX ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387778 111 + . alignment_id 2 ; Query NvOr11FIX ; Align 1387620 352 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr16 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 326 -> 408 Target range: 1402408 -> 1402823 327 : TyrIleAlaGluIleLeuArgThrGluSerThrGluIleGlyAsnAlaAlaTyrGl : 345 |||::: !!!!||| ! !!||| ! !|||||||||.!!|||||||| TyrLeuLysCysCysPheArgHis***SerGlnLeuIleGlyAsnThrAlaTyrGl 1402409 : tatttaaaatgttGCTTTCGTCATTAGAGCCAACTAATCGGCAATACGGCGTATGA : 1402463 346 : uCysAsnTrpTyrAspLeuProAlaCysGluThrArgLeuPheIleLeuThrMetI : 364 |! ! !||||||||||||! !:!! !|||!:!!:!|||.!.|||! !..!!!:: uPheLeuTrpTyrAspLeuArgSerThrGluSerGlnLeuLeuIleProValIleL 1402464 : ATTTCTTTGGTACGATTTACGTTCAACTGAAAGCCAACTTCTAATACCTGTAATAT : 1402520 365 : leArgSerLysThrProPheGluIleThrAlaGlyLysPheThrAlaPheSerLeu : 382 !:||||||:!!! ! !||| !...||| |||||||||::::::..!|||||| euArgSerGlnLysGlyPheThrPheThrPheGlyLysPheSerSerLeuSerLeu 1402521 : TGAGGTCTCAAAAGGGTTTCACGTttacttttggaaaattttcaagtctCTCCTTG : 1402574 383 : GlnLeuTyrCysSer >>>> Target Intron 1 >>>> IleLeuLysThr : 391 :!! !!:! :!! 169 bp |||:!!|||..! GluSerPheThrAla++ ++IleMetLysVal 1402575 : GAAAGCTTTACGGCCgt.........................agATCATGAAAGTC : 1402770 392 : SerGlyGlyTyrLeuSerMetLeuLeuAlaValLysGluArgLeuAlaLeu : 408 |||!.!..!|||:!!|||:!:|||||||||||| ! !|||:!! !||| SerAlaSerTyrIleSerValLeuLeuAlaValTyr***ArgIleLysLeu 1402771 : TCAGCATCATATATATCAGTACTTCTTGCAGTGTATTGAAGAATCAAGTTA : 1402823 vulgar: NvOr16 326 408 . KQ414716.1 1402408 1402823 + 149 M 61 183 5 0 2 I 0 165 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1402409 1402823 149 + . gene_id 1 ; sequence NvOr16 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1402409 1402591 . + . KQ414716.1 exonerate:protein2genome:local exon 1402409 1402591 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1402592 1402593 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1402592 1402760 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1402759 1402760 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1402761 1402823 . + . KQ414716.1 exonerate:protein2genome:local exon 1402761 1402823 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1402409 1402823 149 + . alignment_id 1 ; Query NvOr16 ; Align 1402409 327 183 ; Align 1402761 388 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr16 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 335 -> 388 Target range: 1395323 -> 1395482 336 : SerThrGluIleGlyAsnAlaAlaTyrGluCysAsnTrpTyrAspLeuProAlaCy : 354 ||| !..!|||.!!||||||||||||...! !|||||| !||| ! !! SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 355 : sGluThrArgLeuPheIleLeuThrMetIleArgSerLysThrProPheGluIleT : 373 !!:! !!.!:!!.!!|||||| !||||||||||||:!!! !! !!!. !|||| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 374 : hrAlaGlyLysPheThrAlaPheSerLeuGlnLeuTyrCysSerIle : 388 ||||||||||||||! !! !!!.||||||:!! !!:!...!:!:!! hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnVal 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTA : 1395482 vulgar: NvOr16 335 388 . KQ414716.1 1395323 1395482 + 103 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395482 103 + . gene_id 2 ; sequence NvOr16 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395482 103 + . alignment_id 2 ; Query NvOr16 ; Align 1395324 336 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr8 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 337 -> 398 Target range: 1387637 -> 1387955 338 : AlaValTyrThrMetAspTrpPheArgPheSerAlaLysLysSerArgAspLeuPh : 356 :!:||||||...... |||!:! !.!.!.! !!::!:!!:!!||| :::.. SerValTyrAsnPheLeuTrpTyrAspLeuLysProArgGluAlaArgIleValLe 1387638 : TCtgtgtacaattttctttggTACGATCTAAAACCTCGAGAAGCTCgtattgtatt : 1387692 357 : eLeuIleValLeuPheCysGlnArgProValValIleThrAlaGlyLysMetValA : 375 .||||||:::||| ! !|||!:! !:!!:!!:!!||||||||||||.!.|||| uLeuIleIleLeuArgSerGlnLysGluLeuIleLeuThrAlaGlyLysPheValA 1387693 : attaataatattacgaTCTCAGAAAGAGTTAATACTCACTGCGGGCAAATTTGTGA : 1387749 376 : snPheSerLeuLeuSerPheAlaSer >>>> Target Intron 1 >>>> L : 384 ||.!!|||||| !:!!||||||!:: 135 bp : snLeuSerLeuAlaAlaPheAlaAsn++ ++M 1387750 : ATCTTTCCTTGGCTGCATTTGCTAAtgt.........................aga : 1387911 385 : euMetLysAlaSerAlaAlaTyrLeuAsnMetLeuTyrLysMet : 398 :::!:||||||||||||:!!|||:!!::!:!:|||:!! !||| etLeuLysAlaSerAlaSerTyrValSerValLeuHisAlaMet 1387912 : tgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTTGCATGCAATG : 1387955 vulgar: NvOr8 337 398 . KQ414716.1 1387637 1387955 + 124 M 46 138 5 0 2 I 0 131 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387638 1387955 124 + . gene_id 1 ; sequence NvOr8 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387638 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387638 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387955 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387955 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387638 1387955 124 + . alignment_id 1 ; Query NvOr8 ; Align 1387638 338 138 ; Align 1387911 384 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr13 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 351 -> 404 Target range: 1395323 -> 1395482 352 : SerLeuGluLeuSerTyrAlaValTyrAspCysAspTrpThrIleLeuProAlaLy : 370 ||||||..!:!!||| !!|||!.!|||..!! !||| !:!!||| ! !!:! SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 371 : sGluAlaArgIleLeuLeuLeuIleLeuValArgThrGlnHisProPheGluIleT : 389 !!!: !!.!|||:!!:!!|||:!!:!!:!!|||:!!|||...! !!!. !|||| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 390 : hrAlaGlyLysPheAlaSerPheSerLeuProPheTyrCysArgIle : 404 |||||||||||||| !..!!!.|||||| ! !!:!...!.!:!! hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnVal 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTA : 1395482 vulgar: NvOr13 351 404 . KQ414716.1 1395323 1395482 + 102 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395482 102 + . gene_id 1 ; sequence NvOr13 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395482 102 + . alignment_id 1 ; Query NvOr13 ; Align 1395324 352 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr13 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 351 -> 404 Target range: 1387619 -> 1387778 352 : SerLeuGluLeuSerTyrAlaValTyrAspCysAspTrpThrIleLeuProAlaLy : 370 ||| !...:!!!!! ! :!:||||||::: ||| ! !||| ! !!:: SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 371 : sGluAlaArgIleLeuLeuLeuIleLeuValArgThrGlnHisProPheGluIleT : 389 !||||||||||||:::|||||||||::::::|||:!!||| ! !!!. !:!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 390 : hrAlaGlyLysPheAlaSerPheSerLeuProPheTyrCysArgIle : 404 ||||||||||||||!.!!:!.!!|||||| !! !:!..!!..::: hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: NvOr13 351 404 . KQ414716.1 1387619 1387778 + 100 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387778 100 + . gene_id 2 ; sequence NvOr13 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387778 100 + . alignment_id 2 ; Query NvOr13 ; Align 1387620 352 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr14 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 329 -> 382 Target range: 1395323 -> 1395482 330 : SerThrGluLeuAspTyrAlaAlaTyrAspSerAspTrpTyrAsnLeuProProLy : 348 ||| !..!:!!..! !!|||||||||..!||| !|||||| !||| !|||:! SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 349 : sAspThrLysLeuLeuLeuLeuLeuMetHisArgSerArgLysProLeuGluIleT : 367 !|||! ! ! :!!:!!:!!||||||||| ||||||!:!!:!! !||| !|||| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 368 : hrAlaGlyLysPheCysAlaPheSerLeuArgLeuTyrCysSerIle : 382 |||||||||||||| ! !!!.||||||..! !!:!...!:!:!! hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnVal 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTA : 1395482 vulgar: NvOr14 329 382 . KQ414716.1 1395323 1395482 + 118 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395482 118 + . gene_id 1 ; sequence NvOr14 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395482 118 + . alignment_id 1 ; Query NvOr14 ; Align 1395324 330 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr14 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 327 -> 382 Target range: 1387613 -> 1387778 328 : PheGluSerThrGluLeuAspTyrAlaAlaTyrAspSerAspTrpTyrAsnLeuPr : 346 ||| ||| !...:!! ! :!:...|||::: ||||||:!!||| Phe***SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLy 1387614 : ttttagagtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAA : 1387668 347 : oProLysAspThrLysLeuLeuLeuLeuLeuMetHisArgSerArgLysProLeuG : 365 !|||::!!!:.!!:::::::::||||||:::::: ||||||!:!||| !||| sProArgGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuI 1387669 : ACCTCGAGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAA : 1387725 366 : luIleThrAlaGlyLysPheCysAlaPheSerLeuArgLeuTyrCysSerIle : 382 !:!!||||||||||||||| !.!!|||||| ! !!:!..!!::::: leLeuThrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387726 : TACTCACTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: NvOr14 327 382 . KQ414716.1 1387613 1387778 + 107 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387614 1387778 107 + . gene_id 2 ; sequence NvOr14 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387614 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387614 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387614 1387778 107 + . alignment_id 2 ; Query NvOr14 ; Align 1387614 328 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr6 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 329 -> 380 Target range: 1395329 -> 1395482 330 : SerIleAlaThrThrAlaTyrThrSerLysTrpTyrGlnLeuSerGlyArgGluAl : 348 ||||||::!!.!.!!||||||!:!||| ||||||! |||..! !!:!!!: SerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGlnAspAr 1395330 : TCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCAAGACAG : 1395384 349 : aArgSerIleIleLeuIleValHisTrpAsnArgArgArgValValLeuThrAlaG : 367 !!.!! !|||||||||:!!:!! ! ::!!:!||||||:!!..!:!!||||||| gHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleThrAlaG 1395385 : ACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCACCGCTG : 1395441 368 : lyLysMetLeuThrLeuSerLeuGluSerPheSerSerIle : 380 |||||.!.:!! !||||||||||||.!!|||:!!!:!:!! lyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnVal 1395442 : GAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTA : 1395482 vulgar: NvOr6 329 380 . KQ414716.1 1395329 1395482 + 115 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395330 1395482 115 + . gene_id 1 ; sequence NvOr6 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395330 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395330 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395330 1395482 115 + . alignment_id 1 ; Query NvOr6 ; Align 1395330 330 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr6 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 328 -> 380 Target range: 1387622 -> 1387778 329 : GluSerIleAlaThrThrAlaTyrThrSerLysTrpTyrGlnLeuSerGlyArgGl : 347 ||| !!|||.!! !:!:...|||... ||||||.!.|||!.! !||||| GluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProArgGl 1387623 : gAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCGAGA : 1387677 348 : uAlaArgSerIleIleLeuIleValHisTrpAsnArgArgArgValValLeuThrA : 366 ||||||| ::::::||||||::: ::!!:!!:!..!:!!:!!||||||| uAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuThrA 1387678 : AGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCACTG : 1387734 367 : laGlyLysMetLeuThrLeuSerLeuGluSerPheSerSerIle : 380 ||||||||.!.:!!!.!|||||||||! :!!|||:!!!::::: laGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387735 : CGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: NvOr6 328 380 . KQ414716.1 1387622 1387778 + 114 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387623 1387778 114 + . gene_id 2 ; sequence NvOr6 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387623 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387623 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387623 1387778 114 + . alignment_id 2 ; Query NvOr6 ; Align 1387623 329 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr6 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 321 -> 380 Target range: 1409031 -> 1409208 322 : GlnIleLeuThrGluGlnCysGluSerIleAlaThrThrAlaTyrThrSerLysTr : 340 .!.|||:!! ! ||| ::: |||... !||||||||| !! ! || AsnIleIleAspPheGlnSerLysLeuIleGlyAspThrAlaTyrGluPheLeuTr 1409032 : AATATCATTGATTTTcagagtaaactgattggagACACGGCGTATGAATTTCTTTG : 1409086 341 : pTyrGlnLeuSerGlyArgGluAlaArgSerIleIleLeuIleValHisTrpAsnA : 359 ||||.!.:!! !..!!:!|||::!||| !!!::!:|||:!!:!!! ! :::! pTyrAsnMetHisSerLysGluSerArgLeuMetLeuLeuValIleLeuArgSerG 1409087 : GTATAATATGCATTCGAAGGAAAGCCGACTTATGTTGCTTGTAATACTACGATCAC : 1409143 360 : rgArgArgValValLeuThrAlaGlyLysMetLeuThrLeuSerLeuGluSerPhe : 377 :!!:! !! !!......||| ||||||... :::||||||:!!||||||||| lnLysGlyPheThrPheThrPheGlyLysPheAlaSerLeuSerMetGluSerPhe 1409144 : AGAAAGGATTTACtttcacttttggaaaatttgcaagtCTTTCCATGGAAAGTTTT : 1409197 378 : SerSerIle : 380 :!!.!!:!! AlaGlyVal 1409198 : GCAGGCGTA : 1409208 vulgar: NvOr6 321 380 . KQ414716.1 1409031 1409208 + 100 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1409032 1409208 100 + . gene_id 3 ; sequence NvOr6 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1409032 1409208 . + . KQ414716.1 exonerate:protein2genome:local exon 1409032 1409208 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1409032 1409208 100 + . alignment_id 3 ; Query NvOr6 ; Align 1409032 322 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr12 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 337 -> 387 Target range: 1345564 -> 1345714 338 : SerMetGluIleGlyAsnAlaAlaTyrHisCysAspTrpTyrAspLeuSerAlaPh : 356 ||| |||!!: !.!.|||..!||| ! !!:!!|||||||||||| !!! ! SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 357 : eGluArgArgLeuPheIleLeuThrIleIleArgSerLysThrProPheGluIleT : 375 ! ! !|||! !!!.|||!!! !||| !||||||:!!! !|||! ! :!!| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 376 : hrAlaGlyLysPheAlaAlaPheSerLeuGluPheTyr : 387 |||||||||||||| !!.!|||||||||||| !:! hrAlaGlyLysPheTyrValPheSerLeuGluThrPhe 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTC : 1345714 vulgar: NvOr12 337 387 . KQ414782.1 1345564 1345714 + 103 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345714 103 + . gene_id 1 ; sequence NvOr12 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345714 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345714 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345714 103 + . alignment_id 1 ; Query NvOr12 ; Align 1345565 338 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr15 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 330 -> 380 Target range: 1345564 -> 1345714 331 : SerLeuAlaLeuSerSerAlaIlePheAspAsnThrTrpTyrAspLeuProProLy : 349 |||! !! !:!!..!..!||| !!:! !!:!!.!||||||||||||||| !|| SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 350 : sHisAlaLysLeuLeuLeuLeuProLeuGlnArgThrGlyLysProLeuIleValT : 368 |:!!.!!::!! !|||:!!!!! !:!! |||:!! !||||||! ! !:!!| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 369 : hrAlaGlyLysPheValValPheSerLeuAsnLeuPhe : 380 |||||||||||||| !||||||||||||.!. !||| hrAlaGlyLysPheTyrValPheSerLeuGluThrPhe 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTC : 1345714 vulgar: NvOr15 330 380 . KQ414782.1 1345564 1345714 + 114 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345714 114 + . gene_id 1 ; sequence NvOr15 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345714 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345714 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345714 114 + . alignment_id 1 ; Query NvOr15 ; Align 1345565 331 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr11FIX Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 351 -> 401 Target range: 1345564 -> 1345714 352 : SerValAspIleSerAspAlaAlaTyrGlnCysAspTrpTyrAspLeuThrProGl : 370 ||| !!!:!!:..!.!.|||..!||| !!:!!|||||||||||| !! !:! SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 371 : nGlnSerLysGlnLeuIleIleIleMetLeuArgAlaArgArgProLeuGlnValT : 389 ! ! !!!::!..!||||||.!! !!!: !|||:!!!:!!:!|||! ! ! :!!| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 390 : hrAlaGlyLysPheValAlaPheSerLeuSerLeuTyr : 401 |||||||||||||| !!.!|||||||||..! !!:! hrAlaGlyLysPheTyrValPheSerLeuGluThrPhe 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTC : 1345714 vulgar: NvOr11FIX 351 401 . KQ414782.1 1345564 1345714 + 104 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345714 104 + . gene_id 1 ; sequence NvOr11FIX ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345714 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345714 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345714 104 + . alignment_id 1 ; Query NvOr11FIX ; Align 1345565 352 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr16 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 335 -> 385 Target range: 1345564 -> 1345714 336 : SerThrGluIleGlyAsnAlaAlaTyrGluCysAsnTrpTyrAspLeuProAlaCy : 354 |||:!!|||!!: !.!.|||..!||| !!||||||||||||||||||! ! SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 355 : sGluThrArgLeuPheIleLeuThrMetIleArgSerLysThrProPheGluIleT : 373 ! ||||||! !!!.|||!!! !!!: !||||||:!!! !|||! ! :!!| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 374 : hrAlaGlyLysPheThrAlaPheSerLeuGlnLeuTyr : 385 |||||||||||||| !!.!|||||||||:!! !!:! hrAlaGlyLysPheTyrValPheSerLeuGluThrPhe 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTC : 1345714 vulgar: NvOr16 335 385 . KQ414782.1 1345564 1345714 + 117 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345714 117 + . gene_id 1 ; sequence NvOr16 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345714 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345714 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345714 117 + . alignment_id 1 ; Query NvOr16 ; Align 1345565 336 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr14 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 327 -> 379 Target range: 1345558 -> 1345714 328 : PheGluSerThrGluLeuAspTyrAlaAlaTyrAspSerAspTrpTyrAsnLeuPr : 346 ||| !!|||:!!|||:!!.!. ! |||..!||| !|||:!!||||||:!!||||| Phe***SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuPr 1345559 : TTCTAGAGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACC : 1345613 347 : oProLysAspThrLysLeuLeuLeuLeuLeuMetHisArgSerArgLysProLeuG : 365 | !||| !!|||::!! !|||:!!!!!! !!!: !||||||!:!||||||! ! oAspLysTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerT 1345614 : AGATAAATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGT : 1345670 366 : luIleThrAlaGlyLysPheCysAlaPheSerLeuArgLeuTyr : 379 ! :!!|||||||||||||||! !!.!|||||||||..! !!:! yrLeuThrAlaGlyLysPheTyrValPheSerLeuGluThrPhe 1345671 : ACCTAACAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTC : 1345714 vulgar: NvOr14 327 379 . KQ414782.1 1345558 1345714 + 126 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345559 1345714 126 + . gene_id 1 ; sequence NvOr14 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345559 1345714 . + . KQ414782.1 exonerate:protein2genome:local exon 1345559 1345714 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345559 1345714 126 + . alignment_id 1 ; Query NvOr14 ; Align 1345559 328 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr16 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 208 Query range: 294 -> 402 Target range: 33807 -> 34668 295 : IleIleLeuThrSerArgAspThrValGlnValThrGluLeuLeuPheMetIleTyrPhe : 314 :!:|||||| !!:!..! ! !:!! !..!:!!|||||||||.!.:!: ||| ValIleLeuGluAsnGluLysGlyIlePheAsnValGlnLeuLeuPhePheValLeuPhe 33808 : GTGATACTAGAAAACGAGAAAGGAATATTCAACGTGCAATTGCTTTTCTTCGTGCTGTTC : 33865 315 : IleLeuCysIleAlaPheSerLeuPheIleTyrCysTyrIleAlaGluIleLeuArgThr : 334 :!!! !! !||| ! ! !:!!!:!|||||||||||||||!.!|||!!:|||! !||| ValCysPheIleLeuValHisIleTyrIleTyrCysTyrIleGlyGluMetLeuLeuThr 33866 : GTATGCTTCATCCTTGTACACATCTACATTTATTGTTACATAGGAGAGATGCTACTCACA : 33925 335 : Glu >>>> Target Intron 1 >>>> SerThrGluIleGlyAsnAlaAlaTyrG : 345 .!. 454 bp |||! !|||!!:.!!|||:!!||||||| His+- ++SerArgGluMetSerAsnSerAlaTyrG 33926 : CATgc.........................agAGCAGAGAAATGAGCAATTCCGCTTACG : 34412 346 : luCysAsnTrpTyrAspLeuProAlaCysGluThrArgLeuPheIleLeuThrMetIleA : 365 ||! |||||||||:!!:!! !! !! |||.!!!:!! !.!!:!!!!!! !||| !| luSerAsnTrpTyrAsnValSerProProGluAlaLysCysLeuLeuPheIleMetHisA 34413 : AGTCAAACTGGTACAACGTCTCACCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACA : 34472 366 : rgSerLysThrProPheGluIleThrAlaGlyLysPheThrAlaPheSerLeuGlnLeuT : 385 ||!!! !|||.!! :!:|||||||||||||||!:!.!!||||||:!!:!!:!!! rgThrAlaArgProLeuCysLeuThrAlaGlyLysPheSerThrPheSerMetGluMetP 34473 : GAACCGCTCGTCCACTTTGCTTGACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGT : 34532 386 : yrCysSer >>>> Target Intron 2 >>>> IleLeuLysThrSerGlyGlyTy : 395 :! !!!!! 83 bp ||||||||||||:!! !||||| heSerThr++ ++IleLeuLysThrAlaMetGlyTy 34533 : TCAGTACTgt.........................agattcTGAAAACAGCAATGGGATA : 34645 396 : rLeuSerMetLeuLeuAlaVal : 402 |||||||:!:||||||.!!||| rLeuSerValLeuLeuThrVal 34646 : TCTTTCAGTTCTCCTCACAGTT : 34668 vulgar: NvOr16 294 402 . KQ414804.1 33807 34668 + 208 M 41 123 5 0 2 I 0 450 3 0 2 M 52 156 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33808 34668 208 + . gene_id 1 ; sequence NvOr16 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33808 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33808 33930 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 1 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 1 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34668 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34668 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33808 34668 208 + . alignment_id 1 ; Query NvOr16 ; Align 33808 295 123 ; Align 34385 336 156 ; Align 34624 388 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr16 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 206 Query range: 300 -> 388 Target range: 51726 -> 52050 301 : AspThrValGlnValThrGluLeuLeuPheMetIleTyrPheIleLeuCysIleAlaPhe : 320 ||| ! !...::: ::::::||||||:!!:!:!:!!:!:!::!!! !:!: !.!. AspGluAsnMetIlePheGlnIleLeuPheLeuLeuPheTyrValValTyrValMetLeu 51727 : GATGAAAACAtgattttccaaattctctTTTTGCTGTTCTACGTGGTTTACGTGATGCTA : 51784 321 : SerLeuPheIleTyrCysTyrIleAlaGluIleLeuArgThrGlu >>>> Target I : 336 ..!||||||:!:|||||||||:!:!.!|||! ||| !..!||| 60 GlnLeuPheLeuTyrCysTyrValGlyGluArgLeuSerValGlu++ 51785 : CAATTATTCTTGTATTGTTACGTGGGTGAAAGGCTTTCCGTTGAGgt............. : 51834 337 : ntron 1 >>>> SerThrGluIleGlyAsnAlaAlaTyrGluCysAsnTrpTyrAspL : 351 bp |||..!||||||!.!||||||||||||!!:! !.!.||||||:!!| ++SerValGluIleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnL 51835 : ............agAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAATGGTACAATT : 51937 352 : euProAlaCysGluThrArgLeuPheIleLeuThrMetIleArgSerLysThrProPheG : 371 || !! !! .!..!!!:!|||.!.:!!:!!! !||| !|||:!!!:! !|||.!.: euSerProLysAsnAlaLysLeuLeuLeuIleIleMetArgArgAlaArgLeuProLeuG 51938 : TGTCTCCGAAAAATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGTTACCTCTAC : 51997 372 : luIleThrAlaGlyLysPheThrAlaPheSerLeuGlnLeuTyrCysSerIle : 388 !!||||||||||||!:!|||.!!.!!|||!!!|||..!||||||! ..!:!: lnIleThrAlaGlyArgPheAlaThrPheThrLeuMetLeuTyrSerGlnVal 51998 : AAATCACTGCAGGTAGATTTGCTACTTTCACTCTGATGCTGTATTCACAGGTa : 52050 vulgar: NvOr16 300 388 . KQ414804.1 51726 52050 + 206 M 35 105 5 0 2 I 0 56 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51727 52050 206 + . gene_id 2 ; sequence NvOr16 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51727 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51727 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52050 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52050 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51727 52050 206 + . alignment_id 2 ; Query NvOr16 ; Align 51727 301 105 ; Align 51892 336 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr16 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 326 -> 406 Target range: 39938 -> 40256 327 : TyrIleAlaGluIleLeuArgThrGluSerThrGluIleGlyAsnAlaAlaTyrGluCys : 346 ||||||...:::||| ... ||||||! !||||||.!.:!!||||||!!:||| TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 347 : AsnTrpTyrAspLeuProAlaCysGluThrArgLeuPheIleLeuThrMetIleArgSer : 366 |||||||||||||||||| !! .!..!! !! !!!.:!!:!!..!!!: !|||:!! AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 367 : LysThrProPheGluIleThrAlaGlyLysPheThrAlaPheSerLeuGlnLeuTyrCys : 386 :!!..! !!|||:!!||||||||||||||||||!:! !!|||||||||:!!|||!:! ! GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsn 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAAC : 40116 387 : SerIleLeu{L} >>>> Target Intron 1 >>>> {ys}ThrSerGlyGlyTyr : 395 :!!:!: !{:} 78 bp {!!}||||||!.!|||||| AlaValSer{G}+- +-{ln}ThrSerAlaGlyTyr 40117 : GCTGTGAGT{C}ga.........................aa{AA}ACGTCTGCTGGATAT : 40221 396 : LeuSerMetLeuLeuAlaValLysGluArgLeu : 406 ||||||:!!|||||||||:!!|||!!:|||||| LeuSerValLeuLeuAlaMetLysAspArgLeu 40222 : CTTTCCGTGTTGCTAGCTATGAAAGACAGACTG : 40256 vulgar: NvOr16 326 406 . KQ414804.1 39938 40256 + 165 M 63 189 S 0 1 5 0 2 I 0 74 3 0 2 S 1 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40256 165 + . gene_id 3 ; sequence NvOr16 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39939 40128 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40128 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40129 40130 . + . intron_id 1 ; splice_site "GA" KQ414804.1 exonerate:protein2genome:local intron 40129 40206 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40205 40206 . + . intron_id 0 ; splice_site "AA" KQ414804.1 exonerate:protein2genome:local cds 40207 40256 . + . KQ414804.1 exonerate:protein2genome:local exon 40207 40256 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40256 165 + . alignment_id 3 ; Query NvOr16 ; Align 39939 327 189 ; Align 40209 391 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr16 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 177 -> 263 Target range: 36776 -> 37034 178 : AlaHisPheAlaTyrAspValGlnLysSerProValTyrGluIleValTrpIlePheGln : 197 ||| ||| !!||||||..!.!.||||||||| !|||||||||..!|||:!! ||| AlaThrPheProTyrAspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGln 36777 : GCCACATTTCCATACGACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAA : 36834 198 : CysIleAlaMetHisLeuAlaGlyLeuSerPheMetAlaIleAspSerLeuPheSerIle : 217 ! !:!:!.!! |||::!!.!:!!!!!!:! ..!.!!|||!!!!!! !!:!!:!! PheValGlyThrValLeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaVal 36835 : TTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTT : 36894 218 : LeuValLeuHisLeuCysGlyGlnLeuIleAsnLeuGlnGluArgLeuLysAsnValThr : 237 ||||||||||||:!!||||||||||||! ! !|||!:: !|||:!!|||:!!.!! LeuValLeuHisIleCysGlyGlnLeuThrValLeuArgIleAlaLeuGluAsnLeuAla 36895 : CTCGTGTTACACATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTCGAGAATCTTGCT : 36954 238 : GluAsnLeuThrLysArgHisAsnLeuSerTyrGlnLeuSerArgIleValMetArgHis : 257 .!.!.. !! !||| !:!! !! !!.!!:!||| ! !! ! ! !!!: !||| AsnThrThrIleLysAspAsnTyrSerLysPheGlnGluArgLeuGlyTyrIleValHis 36955 : AACACGACAATAAAAGACAACTACAGCAAGTTCCAAGAACGATTAGGATACATTGTGCAC : 37014 258 : GluGlnLeuAspArgPhe : 263 ..!||| !.!. !||| ArgGlnAsnGlnLeuPhe 37015 : AGGCAGAATCAATTGTTC : 37034 vulgar: NvOr16 177 263 . KQ414804.1 36776 37034 + 141 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36777 37034 141 + . gene_id 4 ; sequence NvOr16 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36777 37034 . + . KQ414804.1 exonerate:protein2genome:local exon 36777 37034 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36777 37034 141 + . alignment_id 4 ; Query NvOr16 ; Align 36777 178 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr16 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 175 -> 263 Target range: 44880 -> 45138 176 : MetArgAlaHisPheAlaTyrAspValGlnLysSerProValTyrGluIleValTrpIle : 195 .!.||||||:!!||| !!|||||| !.!. |||||| !||||||.!!..! !||| PheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThrValIle 44881 : TTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACAGTGATT : 44938 196 : PheGlnCysIleAlaMetHisLeuAlaGlyLeuSerPheMetAlaIleAspSerLeuPhe : 215 !||| !|||||| !! !|||!.! !!!!!:!! |||:!!|||!!!!!!.!! AlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThrPheIle 44939 : GCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACTTTCATT : 44998 216 : SerIleLeuValLeuHisLeuCysGlyGlnLeuIleAsnLeuGlnGluArgLeuLysAsn : 235 !!!:|||:!!||||||:!!|||||||||||| ||||||::!.!...!!!! !!. ValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArgAsnGluPheGlyLys 44999 : GTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGAAACGAATTCGGTAAG : 45058 236 : ValThrGluAsnLeuThrLysArgHisAsnLeuSerTyrGlnLeuSerArgIleValMet : 255 :!! .!. ! ! ! !:! !..|||..! :!!|||.!!!:!||||||..! Leu------GlnAlaCysAspLysValThrLeuGlnAlaLysLeuGlyLysIleValGln 45059 : CTT------CAAGCATGCGATAAAGTAACATTACAGGCGAAGTTGGGGAAAATCGTGCAG : 45112 256 : ArgHisGluGlnLeuAspArgPhe : 263 !:!|||||| ! |||:!!|||||| LysHisGluTyrLeuAsnArgPhe 45113 : AAACACGAATATCTTAACAGGTTC : 45138 vulgar: NvOr16 175 263 . KQ414804.1 44880 45138 + 141 M 61 183 G 2 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44881 45138 141 + . gene_id 5 ; sequence NvOr16 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44881 45138 . + . KQ414804.1 exonerate:protein2genome:local exon 44881 45138 . + . insertions 0 ; deletions 2 KQ414804.1 exonerate:protein2genome:local similarity 44881 45138 141 + . alignment_id 5 ; Query NvOr16 ; Align 44881 176 183 ; Align 45064 239 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr12 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 242 Query range: 263 -> 404 Target range: 33631 -> 34668 264 : ArgPheAlaLysAlaIleGluAsnAlaPheAsnThrMetPheLeuValGlnMetLeuLeu : 283 |||||||||! !||||||:!!..!|||||||||:!!.!.|||:!!|||||||||||| ArgPheAlaThrMetIleGluAspCysPheAsnThrLeuLeuLeuIleGlnMetLeuLeu 33632 : aGGTTCGCAACTATGATCGAGGATTGTTTCAACACATTGCTATTAATTCAGATGCTGCTC : 33689 284 : SerGlyMetValLeuCysLeuGlnGlyTyrGlnIleVal<-> >>>> Target Intr : 297 !!! !:!:! !:!!|||!!!||||||!:! !.!! !! 74 bp CysThrValGluIleCysPheGlnGlyPheLeuPhePheAsp++ 33690 : TGTACCGTCGAAATATGCTTTCAAGGCTTTTTATTCTTCGATgt................ : 33736 298 : on 1 >>>> IleIleLeuThrGlyArgAspThrValGlnIleIleGluLeuLeuPheM : 313 :!:|||||| !..!..! ! !:!! ! !:!::!!|||||||||. ++ValIleLeuGluAsnGluLysGlyIlePheAsnValGlnLeuLeuPheP 33737 : .........agGTGATACTAGAAAACGAGAAAGGAATATTCAACGTGCAATTGCTTTTCT : 33856 314 : etValTyrTyrThrLeuCysPheAlaPheSerLeuPheValTyrCysTyrIleAlaGluI : 333 !.||| !:!..!! !! !.!! ! ! !:!!!:!:!!||||||||||||!.!|||! heValLeuPheValCysPheIleLeuValHisIleTyrIleTyrCysTyrIleGlyGluM 33857 : TCGTGCTGTTCGTATGCTTCATCCTTGTACACATCTACATTTATTGTTACATAGGAGAGA : 33916 334 : leLeuArgIleGlu >>>> Target Intron 2 >>>> SerMetGluIleGlyAs : 343 !:|||! !! !.!. 454 bp |||! |||!!:.!!|| etLeuLeuThrHis+- ++SerArgGluMetSerAs 33917 : TGCTACTCACACATgc.........................agAGCAGAGAAATGAGCAA : 34400 344 : nAlaAlaTyrHisCysAspTrpTyrAspLeuSerAlaPheGluArgArgLeuPheIleLe : 363 |:!!||||||.!.! :!!||||||:!!:!!||| !! ||| !!:!! !.!!:!!!! nSerAlaTyrGluSerAsnTrpTyrAsnValSerProProGluAlaLysCysLeuLeuPh 34401 : TTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCAGAAGCCAAGTGCCTTTTATT : 34460 364 : uThrIleIleArgSerLysThrProPheGluIleThrAlaGlyLysPheAlaAlaPheSe : 383 !! !!!: !|||!!! !|||.!! :!:|||||||||||||||::!.!!||||| eIleMetHisArgThrAlaArgProLeuCysLeuThrAlaGlyLysPheSerThrPheSe 34461 : TATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCAGGAAAATTCAGTACCTTCTC : 34520 384 : rLeuGluPheTyrCysSer >>>> Target Intron 3 >>>> IleLeuLysThr : 393 |:!!|||.!.!:! !!!!! 83 bp |||||||||||| rMetGluMetPheSerThr++ ++IleLeuLysThr 34521 : CATGGAAATGTTCAGTACTgt.........................agattcTGAAAACA : 34633 394 : SerGlyGlyTyrLeuSerValLeuLeuAlaVal : 404 :!! !|||||||||||||||||||||.!!||| AlaMetGlyTyrLeuSerValLeuLeuThrVal 34634 : GCAATGGGATATCTTTCAGTTCTCCTCACAGTT : 34668 vulgar: NvOr12 263 404 . KQ414804.1 33631 34668 + 242 M 33 99 G 0 3 5 0 2 I 0 70 3 0 2 M 41 123 5 0 2 I 0 450 3 0 2 M 52 156 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33632 34668 242 + . gene_id 1 ; sequence NvOr12 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33632 33733 . + . KQ414804.1 exonerate:protein2genome:local exon 33632 33733 . + . insertions 3 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33734 33735 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 33734 33807 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 33806 33807 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 33808 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33808 33930 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 2 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 1 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 3 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 3 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 2 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34668 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34668 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33632 34668 242 + . alignment_id 1 ; Query NvOr12 ; Align 33632 264 99 ; Align 33808 297 123 ; Align 34385 338 156 ; Align 34624 390 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr12 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 224 Query range: 302 -> 396 Target range: 51726 -> 52319 303 : AspThrValGlnIleIleGluLeuLeuPheMetValTyrTyrThrLeuCysPheAlaPhe : 322 ||| ! !...|||...::::::||||||:!!:!!!:!|||..!:!!! ! ! !.!. AspGluAsnMetIlePheGlnIleLeuPheLeuLeuPheTyrValValTyrValMetLeu 51727 : GATGAAAACAtgattttccaaattctctTTTTGCTGTTCTACGTGGTTTACGTGATGCTA : 51784 323 : SerLeuPheValTyrCysTyrIleAlaGluIleLeuArgIleGlu >>>> Target I : 338 ..!||||||:!!|||||||||:!:!.!|||! ||| !:!!||| 60 GlnLeuPheLeuTyrCysTyrValGlyGluArgLeuSerValGlu++ 51785 : CAATTATTCTTGTATTGTTACGTGGGTGAAAGGCTTTCCGTTGAGgt............. : 51834 339 : ntron 1 >>>> SerMetGluIleGlyAsnAlaAlaTyrHisCysAspTrpTyrAspL : 353 bp |||:!:||||||!.!|||||||||||| !!! !!!:||||||:!!| ++SerValGluIleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnL 51835 : ............agAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAATGGTACAATT : 51937 354 : euSerAlaPheGluArgArgLeuPheIleLeuThrIleIleArgSerLysThrProPheG : 373 ||||| !! .!. !!:!|||.!.:!!:!!! !!!: !|||:!!!:! !|||.!.: euSerProLysAsnAlaLysLeuLeuLeuIleIleMetArgArgAlaArgLeuProLeuG 51938 : TGTCTCCGAAAAATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGTTACCTCTAC : 51997 374 : luIleThrAlaGlyLysPheAlaAlaPheSerLeuGluPheTyrCysSer >>>> Tar : 390 !!||||||||||||!:!||||||.!!|||!!!||| !.!.|||! ..! lnIleThrAlaGlyArgPheAlaThrPheThrLeuMetLeuTyrSerGln++ 51998 : AAATCACTGCAGGTAGATTTGCTACTTTCACTCTGATGCTGTATTCACAGgt........ : 52050 391 : get Intron 2 >>>> IleLeuLysThrSerGlyGly : 396 251 bp |||||||||||||||! !||| ++IleLeuLysThrSerValGly 52051 : .................agATTTTAAAAACCTCGGTGGGA : 52319 vulgar: NvOr12 302 396 . KQ414804.1 51726 52319 + 224 M 35 105 5 0 2 I 0 56 3 0 2 M 52 156 5 0 2 I 0 247 3 0 2 M 7 21 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51727 52319 224 + . gene_id 2 ; sequence NvOr12 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51727 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51727 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52047 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52047 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 52048 52049 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 52048 52298 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 52297 52298 . + . intron_id 1 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 52299 52319 . + . KQ414804.1 exonerate:protein2genome:local exon 52299 52319 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51727 52319 224 + . alignment_id 2 ; Query NvOr12 ; Align 51727 303 105 ; Align 51892 338 156 ; Align 52299 390 21 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr12 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 173 -> 264 Target range: 36764 -> 37037 174 : LeuTyrMetArgSerTyrPheIleTyrAspValGlnLysThrProValTyrGluIleIle : 193 ||| !!!:! !:!! ||| !||||||..!.!.|||!:!||| !|||||||||! ! LeuLeuIleProAlaThrPheProTyrAspThrAsnLysSerProAsnTyrGluIleThr 36765 : CTACTTATCCCGGCCACATTTCCATACGACACGAATAAAAGTCCTAATTACGAAATTACT : 36822 194 : TrpIlePheGlnPheValSerMetGlyValAlaThrPheThrPheMetAlaValAspSer : 213 |||:!! |||||||||.!!! ! !:!!::!.!!.!. !!:! ..! !!|||!!! TrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSerCysPheAspThr 36823 : TGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGATACG : 36882 214 : LeuPheAlaValLeuMetMetHisLeuCysGlyGlnLeuIleAsnLeuGlnGluArgLeu : 233 !!! !!|||||||||:!!:!:|||:!!||||||||||||! ! !|||!:: !||| PheValAlaValLeuValLeuHisIleCysGlyGlnLeuThrValLeuArgIleAlaLeu 36883 : TTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTC : 36942 234 : LysAsnPheThrAsnMetLeuGlyGlnThrLysThrArgAsnPheSerTyrGlnLeuSer : 253 :!!|||.!!.!!|||! ! ! !:!! !!!. !!!!!!.|||..! ! !:!|||.!! GluAsnLeuAlaAsnThrThrIleLysAspAsnTyrSerLysPheGlnGluArgLeuGly 36943 : GAGAATCTTGCTAACACGACAATAAAAGACAACTACAGCAAGTTCCAAGAACGATTAGGA : 37002 254 : ThrIleValSerArgHisGluGlnLeuAsnArg : 264 !|||||| !|||!!..!.|||||| !||| TyrIleValHisArgGlnAsnGlnLeuPheArg 37003 : TACATTGTGCACAGGCAGAATCAATTGTTCAGG : 37037 vulgar: NvOr12 173 264 . KQ414804.1 36764 37037 + 155 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36765 37037 155 + . gene_id 3 ; sequence NvOr12 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36765 37037 . + . KQ414804.1 exonerate:protein2genome:local exon 36765 37037 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36765 37037 155 + . alignment_id 3 ; Query NvOr12 ; Align 36765 174 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr12 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 328 -> 408 Target range: 39938 -> 40256 329 : TyrIleAlaGluIleLeuArgIleGluSerMetGluIleGlyAsnAlaAlaTyrHisCys : 348 ||||||...:::||| ...... |||! ! !||||||.!.:!!|||||| !!||| TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 349 : AspTrpTyrAspLeuSerAlaPheGluArgArgLeuPheIleLeuThrIleIleArgSer : 368 :!!|||||||||||| !! !! .!. ! !! !!!.:!!:!!..!||| !|||:!! AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 369 : LysThrProPheGluIleThrAlaGlyLysPheAlaAlaPheSerLeuGluPheTyrCys : 388 :!!..! !!|||:!!||||||||||||||||||::! !!||||||||||||.!.!:! ! GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsn 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAAC : 40116 389 : SerIleLeu{L} >>>> Target Intron 1 >>>> {ys}ThrSerGlyGlyTyr : 397 :!!:!: !{:} 78 bp {!!}||||||!.!|||||| AlaValSer{G}+- +-{ln}ThrSerAlaGlyTyr 40117 : GCTGTGAGT{C}ga.........................aa{AA}ACGTCTGCTGGATAT : 40221 398 : LeuSerValLeuLeuAlaValGlnAspArgLeu : 408 ||||||||||||||||||:!!:!!||||||||| LeuSerValLeuLeuAlaMetLysAspArgLeu 40222 : CTTTCCGTGTTGCTAGCTATGAAAGACAGACTG : 40256 vulgar: NvOr12 328 408 . KQ414804.1 39938 40256 + 149 M 63 189 S 0 1 5 0 2 I 0 74 3 0 2 S 1 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40256 149 + . gene_id 4 ; sequence NvOr12 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39939 40128 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40128 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40129 40130 . + . intron_id 1 ; splice_site "GA" KQ414804.1 exonerate:protein2genome:local intron 40129 40206 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40205 40206 . + . intron_id 0 ; splice_site "AA" KQ414804.1 exonerate:protein2genome:local cds 40207 40256 . + . KQ414804.1 exonerate:protein2genome:local exon 40207 40256 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40256 149 + . alignment_id 4 ; Query NvOr12 ; Align 39939 329 189 ; Align 40209 393 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr12 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 173 -> 230 Target range: 44874 -> 45045 174 : LeuTyrMetArgSerTyrPheIleTyrAspValGlnLysThrProValTyrGluIleIle : 193 ||| !.!.|||:!!|||||| !|||||| !.!. !:!||| !||||||.!!! ! LeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThr 44875 : CTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACA : 44932 194 : TrpIlePheGlnPheValSerMetGlyValAlaThrPheThrPheMetAlaValAspSer : 213 !||| !|||.!!:!!:!! ! !|||.!! !|||!:!! |||||||||!!! ValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThr 44933 : GTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACT : 44992 214 : LeuPheAlaValLeuMetMetHisLeuCysGlyGlnLeuIleAsnLeuGln : 230 !!!.!!!.!:!!|||!!::!!|||:!!|||||||||||| ||||||::! PheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArg 44993 : TTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGA : 45045 vulgar: NvOr12 173 230 . KQ414804.1 44874 45045 + 121 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44875 45045 121 + . gene_id 5 ; sequence NvOr12 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44875 45045 . + . KQ414804.1 exonerate:protein2genome:local exon 44875 45045 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44875 45045 121 + . alignment_id 5 ; Query NvOr12 ; Align 44875 174 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr12 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 4 -> 94 Target range: 30782 -> 31049 5 : LysGlyTyrGluGluAlaIleGluAlaThrArgAlaValLeuArgAlaPheGlyValTrp : 24 ..!|||! :!!! !|||:!!! ! !!.!||| ! !:!!..! ! !!|||:!!||| SerGlyLeuLysValAlaLeuGlyTrpAsnArgTrpAsnMetGluLeuValGlyIleTrp 30783 : TCAGGTTTGAAGGTAGCACTTGGATGGAACCGTTGGAACATGGAACTGGTTGGAATTTGG : 30840 25 : ProAsnArgHisLysIleSerGluAsnTrpLeuSerArgSerHisPheLeuAlaProAla : 44 |||.!.! ! !!:! !..!:!!...|||! !!:! !!.! !!!.||| ! ! ProGluProSerArgSerAspGlnArgTrpProAsnPheLysAlaLeuLeuPhe---Ile 30841 : CCAGAACCGAGCAGATCTGATCAACGATGGCCGAATTTCAAGGCTTTGCTGTTC---ATT : 30897 45 : PheLeuIleIleCysPheIleAsnIleProGlnThrLeuLysIleIleLysValTrpArg : 64 |||:::|||||| ||| ..! !||||||!:!:!!!!.:!!:!! :!!||| !! PheValIleIlePhePheGlyThrGlyProGlnSerValAsnLeuLeuPheIleTrpGly 30898 : TTTGtgataatattttttggaaCCGGACCTCAGAGCGTGAATCTACTTTTCATATGGGGA : 30957 65 : AsnLeuAsnGluValLeuAspIleLeuValThrAlaAsnIleProSerPheValAlaLeu : 84 :!!|||... !||| !!!:! !||| !|||||||||||||||.!!.!. !|||:!! AspLeuGlyLeuValThrGluAsnLeuSerThrAlaAsnIleProGlyIleAsnAlaMet 30958 : GACCTTGGATTGGTCACGGAAAATCTGTCCACGGCTAATATTCCCGGCATAAACGCCATG : 31017 85 : IleLysLeuLeuCysValArgTyrAsnLys : 94 !!:||||||:!! !!.! !!:!!:!!!:! MetLysLeuIleIleAlaTrpHisHisArg 31018 : ATGAAACTGATTATCGCCTGGCATCACAGA : 31049 vulgar: NvOr12 4 94 . KQ414804.1 30782 31049 + 103 M 38 114 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 30783 31049 103 + . gene_id 6 ; sequence NvOr12 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 30783 31049 . + . KQ414804.1 exonerate:protein2genome:local exon 30783 31049 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 30783 31049 103 + . alignment_id 6 ; Query NvOr12 ; Align 30783 5 114 ; Align 30897 44 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr12 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 166 -> 263 Target range: 31311 -> 31605 167 : GluSerLysLysLeuArgProLeuTyrMetArgSerTyrPheIleTyrAspValGlnLys : 186 .!...!|||:!! !|||! !||| ! !.!!|||||| !!:!|||:!!!:: ! AsnGlnLysGlnAspArgLeuLeuLeuTyrProGlyTyrPheProPheAspIleArgPro 31312 : AACCAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTATTTTCCCTTCGATATTCGTCCA : 31369 187 : ThrProValTyrGluIleIleTrpIlePheGlnPheValSerMetGlyValAlaThrPhe : 206 ! ! !||| ! ! ! .!! !||| ! :!!:!! ! ! !|||..!.!! IleGlyValLeuLeuSerThrAsnPheGlyGlnValLeuAlaAlaTyrSerAlaValIle 31370 : ATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCAGCGTATTCCGCTGTTATC : 31429 207 : ThrPheMetAlaValAspSerLeuPheAlaValLeuMetMetHisLeuCysGlyGlnLeu : 226 !:!!:!! .!!||||||!!!!!!.!!|||:!!|||!!:||||||:!!|||||||||!!! SerTyrThrThrValAspThrPheIleAlaMetLeuIleMetHisIleCysGlyGlnPhe 31430 : AGTTACACCACCGTGGATACATTTATCGCGATGCTGATAATGCACATATGCGGACAATTT : 31489 227 : IleAsnLeuGlnGluArgLeuLysAsnPheThrAsnMetLeuGlyGlnThrLysThr<-> : 246 ! |||::!:!!!:!|||::!!...!.! !:!! ! !:!!|||!:!!:! GluIleLeuArgGlnLysLeuArgArgLeuMetAspAspGluLysLysThrArgSerVal 31490 : GAGATACTGAGACAGAAATTACGAAGGCTGATGGATGACGAGAAGAAGACCAGAAGCGTG : 31549 247 : ArgAsnPheSerTyrGlnLeuSerThrIleValSerArgHisGluGlnLeuAsn : 263 !.!..!!..! ! :!!||| ! !|||:!!..!|||||||||!!.|||||| AspGluIleGlnLysGluLeuValLeuIleIleGluArgHisGluHisLeuAsn 31550 : GATGAGATTCAGAAGGAGCTGGTTTTGATCATAGAGAGGCATGAGCATCTAAAT : 31605 vulgar: NvOr12 166 263 . KQ414804.1 31311 31605 + 102 M 79 237 G 0 3 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31312 31605 102 + . gene_id 7 ; sequence NvOr12 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31312 31605 . + . KQ414804.1 exonerate:protein2genome:local exon 31312 31605 . + . insertions 3 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 31312 31605 102 + . alignment_id 7 ; Query NvOr12 ; Align 31312 167 237 ; Align 31552 246 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr14 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 299 Query range: 255 -> 382 Target range: 51509 -> 52050 256 : PheAlaLysThrIleGluAspSerPheAsnThrMetPheLeuSerGlnMetIleAlaSer : 275 ||||||:!!||||||||| !!!!||||||! !|||.!!|||! !||||||:!!!.!!!! PheAlaGluThrIleGluArgCysPheAsnMetMetLeuLeuIleGlnMetLeuGlyCys 51510 : TTCGCAGAAACGATAGAGCGTTGTTTCAATATGATGCTTCTGATTCAGATGCTCGGTTGT : 51567 276 : SerLeuAlaLeuCysLeuGlnGlyTyrGlnLeuValMet >>>> Target Intron : 289 !!!:!! !||||||!!!||| !!!:!||| !|||||| 100 bp ThrValGlnLeuCysPheGlnCysPheGlnAlaValMet++ 51568 : ACCGTTCAGCTATGCTTCCAGTGTTTCCAAGCAGTCATGgt................... : 51611 290 : 1 >>>> IleIleThrAsnThrGluGlyLysLeuProValPheGlnLeuIleHisMetI : 306 !||| !.!. ! !! !:!! ! :::||||||:::::: !:!!: ++SerIleAspGluGluIleAspGluAsnMetIlePheGlnIleLeuPheLeuL 51612 : ......agTCAATTGACGAGGAAATAGATGAAAACAtgattttccaaattctctTTTTGC : 51760 307 : leTyrPheThrCysCysPheSerPheSerLeuPheValTyrCysTyrValAlaGluGluL : 326 !:!:!!:!..! !! ! ! ! !.!...!||||||:!!||||||||||||!.!|||..!| euPheTyrValValTyrValMetLeuGlnLeuPheLeuTyrCysTyrValGlyGluArgL 51761 : TGTTCTACGTGGTTTACGTGATGCTACAATTATTCTTGTATTGTTACGTGGGTGAAAGGC : 51820 327 : euArgPheGlu >>>> Target Intron 2 >>>> SerThrGluLeuAspTyrAl : 336 || ! !!||| 60 bp |||..!|||:!!! ! !!|| euSerValGlu++ ++SerValGluIleAlaAsnAl 51821 : TTTCCGTTGAGgt.........................agAGCGTTGAAATAGCTAACGC : 51910 337 : aAlaTyrAspSerAspTrpTyrAsnLeuProProLysAspThrLysLeuLeuLeuLeuLe : 356 |||||||||||||!!:|||||||||||| !!||||||:!!.!!||||||||||||:!!:! aAlaTyrAspSerGluTrpTyrAsnLeuSerProLysAsnAlaLysLeuLeuLeuIleIl 51911 : GGCATACGATTCTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTGCTACTAATTAT : 51970 357 : uMetHisArgSerArgLysProLeuGluIleThrAlaGlyLysPheCysAlaPheSerLe : 376 !|||!..|||:!!||| !||||||:!!||||||||||||!:!|||..!.!!|||!!!|| eMetArgArgAlaArgLeuProLeuGlnIleThrAlaGlyArgPheAlaThrPheThrLe 51971 : CATGCGACGAGCCAGGTTACCTCTACAAATCACTGCAGGTAGATTTGCTACTTTCACTCT : 52030 377 : uArgLeuTyrCysSerIle : 382 |! !||||||! ..!:!: uMetLeuTyrSerGlnVal 52031 : GATGCTGTATTCACAGGTa : 52050 vulgar: NvOr14 255 382 . KQ414804.1 51509 52050 + 299 M 33 99 5 0 2 I 0 96 3 0 2 M 41 123 5 0 2 I 0 56 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51510 52050 299 + . gene_id 1 ; sequence NvOr14 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51510 51608 . + . KQ414804.1 exonerate:protein2genome:local exon 51510 51608 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51609 51610 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51609 51708 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51707 51708 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 51709 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51709 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 1 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52050 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52050 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51510 52050 299 + . alignment_id 1 ; Query NvOr14 ; Align 51510 256 99 ; Align 51709 289 123 ; Align 51892 330 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr14 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 215 Query range: 84 -> 249 Target range: 36527 -> 37019 85 : LysPheLeuValAlaTrpTyrAsnArgLysValLeuLysGlyLeuValIleLeuMetMet : 104 |||...::: ... :::!.. ! !!.!||| ! !|||:!!! !! !!!:.!. LysLeuIlePheThrIleHisThrSerLeuAlaLeuValPheLeuMetSerGlnIlePhe 36528 : AAACtgattttcacaattcacACGTCTCTAGCGCTAGTATTCTTAATGAGCCAAATATTC : 36585 105 : GluAspTrpSerArgSerTyrSerSerSerAsnLeuAspSerMetTrpArgThrAlaArg : 124 !!:||||||:!!..! !! ! !!..! !:!!! ! !!!!!||| !!:!||||||!:! AspAspTrpAlaGluProIleProGluValAspArgHisThrMetLeuLysThrAlaLys 36586 : GACGACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACGATGCTGAAGACCGCGAAA : 36645 125 : PheSerArgLysLeuSerAlaValCysIleGlyLeuAlaGlnGlyThrIleThrAlaGln : 144 .!!||||||! !:!!||| !|||||| ! !|||.!! ! ! !! !:!! !||| IleSerArgMetIleSerIleValCysSerIleLeuThrTyrValMetValLeuAlaPhe 36646 : ATTAGTCGAATGATATCCATAGTCTGTTCTATCCTGACGTATGTCATGGTTTTGGCCTTC : 36705 145 : PheIleMetValValValPheAspValAsnAsnLysGlyGluAlaGlu<->ArgThrLeu : 163 !!. !:!: !:!! ! !..!:!!.!.|||! ..!||| !.!. !! !||| LeuSerLeuGlnIleTrpSerSerMetGlnAsnThrSerGluPheAsnValGlyGlyLeu 36706 : TTGTCACTTCAAATTTGGAGCAGCATGCAAAACACCTCGGAGTTCAACGTAGGAGGACTA : 36765 164 : TyrMetIleSerTyrPheProTyrAspThrGlnValSerProAsnTyrGluIleThrTrp : 183 !!!: :!! |||||||||||||||.!. !|||||||||||||||||||||||| LeuIleProAlaThrPheProTyrAspThrAsnLysSerProAsnTyrGluIleThrTrp 36766 : CTTATCCCGGCCACATTTCCATACGACACGAATAAAAGTCCTAATTACGAAATTACTTGG : 36825 184 : LeuGlyGlnCysPheSerAsnIlePheAlaAlaGlyAlaPheSerAlaValAspAlaPhe : 203 |||||||||! ! ! .!!!..:!:!!.::!||| !..!!:!|||..! !!|||.!!||| LeuGlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSerCysPheAspThrPhe 36826 : CTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGATACGTTC : 36885 204 : PheAlaValLeuValLeuHisLeuCysCysGlnLeuSerIleLeuArgLysGluLeuVal : 223 !!||||||||||||||||||:!!||| !!||||||!!!:!!||||||! ! |||! ! ValAlaValLeuValLeuHisIleCysGlyGlnLeuThrValLeuArgIleAlaLeuGlu 36886 : GTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTCGAG : 36945 224 : MetLeuAlaAspHisHisLysLysGlnGlyAspAsnSerGluGluPheSerArgLysLeu : 243 ! ||||||:!! ! !||| ||||||! !...:!!|||..!..!::!||| AsnLeuAlaAsnThrThrIleLys------AspAsnTyrSerLysPheGlnGluArgLeu 36946 : AATCTTGCTAACACGACAATAAAA------GACAACTACAGCAAGTTCCAAGAACGATTA : 36999 244 : AlaArgIleValGluLys : 249 !.! !||||||.!.!:! GlyTyrIleValHisArg 37000 : GGATACATTGTGCACAGG : 37019 vulgar: NvOr14 84 249 . KQ414804.1 36527 37019 + 215 M 76 228 G 0 3 M 71 213 G 2 0 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36528 37019 215 + . gene_id 2 ; sequence NvOr14 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36528 37019 . + . KQ414804.1 exonerate:protein2genome:local exon 36528 37019 . + . insertions 3 ; deletions 2 KQ414804.1 exonerate:protein2genome:local similarity 36528 37019 215 + . alignment_id 2 ; Query NvOr14 ; Align 36528 85 228 ; Align 36759 161 213 ; Align 36972 234 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr14 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 187 Query range: 327 -> 396 Target range: 34378 -> 34668 328 : PheGluSerThrGluLeuAspTyrAlaAlaTyrAspSerAspTrpTyrAsnLeuProPro : 347 |||:!!|||! !|||:!!..! !!:!!||||||!!:|||:!!|||||||||:!! !!||| PheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerPro 34379 : TTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCT : 34436 348 : LysAspThrLysLeuLeuLeuLeuLeuMetHisArgSerArgLysProLeuGluIleThr : 367 !!!:.!!|||! !||||||!!!:!!|||||||||!!! !:::|||||| :!:||| ProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThr 34437 : CCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACT : 34496 368 : AlaGlyLysPheCysAlaPheSerLeuArgLeuTyrCysSer >>>> Target Intr : 382 |||||||||||| !!.!!||||||:!!..!:!!!:! !!!!! 83 bp AlaGlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34497 : GCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt................ : 34543 383 : on 1 >>>> IleLeuLysThrSerGlyGlyTyrLeuSerMetLeuLeuAlaVal : 396 ||||||||||||:!! !||||||||||||:!:||||||.!!||| ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeuThrVal 34544 : .........agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTCACAGTT : 34668 vulgar: NvOr14 327 396 . KQ414804.1 34378 34668 + 187 M 54 162 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34379 34668 187 + . gene_id 3 ; sequence NvOr14 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34379 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34379 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34668 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34668 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34379 34668 187 + . alignment_id 3 ; Query NvOr14 ; Align 34379 328 162 ; Align 34624 382 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr14 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 89 -> 254 Target range: 31104 -> 31605 90 : TrpTyrAsnArgLysValLeuLysGlyLeuValIleLeuMetMetGluAspTrpSerArg : 109 :::::: ...|||....!!||| !:!!:!!! !! !.!. !!:||||||!.!! ! PheHisPheAsnLysAlaPheLysProValIleLysSerPheTyrAspAspTrpLysThr 31105 : tttcattttaacaaagcttTCAAGCCCGTTATAAAATCCTTCTACGACGATTGGAAAACC : 31162 110 : SerTyrSerSerSerAsnLeuAspSerMetTrpArgThrAlaArgPheSerArgLysLeu : 129 ||| !!:......... :::::!|||! !!:!! !|||!:!|||:!!!:!:!!:!! SerArgThrLysGluGluLysGluThrMetLeuLysArgAlaLysPheAlaLysGlnIle 31163 : TCAAGGACcaaggaggagaaggagacCATGTTGAAGAGAGCCAAATTTGCGAAACAAATT : 31222 130 : SerAlaValCys<-><->IleGlyLeuAlaGlnGlyThrIleThrAlaGlnPheIleMet : 147 ||| ! !||| :!! !|||.!!..!! !|||:!! ! !....!! ! ! SerIleTrpCysSerValLeuThrLeuThrMetValThrValTyrLeuSerLeuArgAla 31223 : TCCATCTGGTGCTCAGTATTAACCTTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCG : 31282 148 : ValValValPheAspValAsnAsnLysGlyGlu<->AlaGluArgThrLeuTyrMetIle : 166 !:!!:!!!:!.!.:!!:!!!.. !..!:!! !!!:||| !||| ! TrpIleIleTyrGlnLeuAspArgAlaAsnGlnLysGlnAspArgLeuLeuLeuTyrPro 31283 : TGGATCATCTACCAGCTTGATAGGGCAAACCAGAAACAGGATCGTCTGCTCCTGTACCCT : 31342 167 : SerTyrPheProTyrAspThrGlnValSerProAsnTyrGluIleThrTrpLeuGlyGln : 186 .!!|||||||||!:!|||! !!:: !! ! ! ! ||| !!!|||||| GlyTyrPheProPheAspIleArgProIleGlyValLeuLeuSerThrAsnPheGlyGln 31343 : GGCTATTTTCCCTTCGATATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAA : 31402 187 : CysPheSerAsnIlePheAlaAlaGlyAlaPheSerAlaValAspAlaPhePheAlaVal : 206 .!!:!! !! !|||!.! !::!!:!!!!.!!||||||.!!|||.!!|||:!! ValLeuAlaAlaTyrSerAlaValIleSerTyrThrThrValAspThrPheIleAlaMet 31403 : GTGCTCGCAGCGTATTCCGCTGTTATCAGTTACACCACCGTGGATACATTTATCGCGATG : 31462 207 : LeuValLeuHisLeuCysCysGlnLeuSerIleLeuArgLysGluLeuValMetLeuAla : 226 |||:!!:!!|||:!!||| ! |||!!!..!|||||||||:!!:!!||| !! !||| ! LeuIleMetHisIleCysGlyGlnPheGluIleLeuArgGlnLysLeuArgArgLeuMet 31463 : CTGATAATGCACATATGCGGACAATTTGAGATACTGAGACAGAAATTACGAAGGCTGATG : 31522 227 : AspHisHisLysLysGlnGlyAspAsnSerGluGluPheSerArgLysLeuAlaArgIle : 246 ||| !!.!.|||||| !:! !!!:|||.!!..!!:!:!!|||!.! !||| AspAspGluLysLysThr---ArgSerValAspGluIleGlnLysGluLeuValLeuIle 31523 : GATGACGAGAAGAAGACC---AGAAGCGTGGATGAGATTCAGAAGGAGCTGGTTTTGATC : 31579 247 : ValGluLysHisGluTyrPheAsn : 254 :!!|||!:!||||||:!!.!.||| IleGluArgHisGluHisLeuAsn 31580 : ATAGAGAGGCATGAGCATCTAAAT : 31605 vulgar: NvOr14 89 254 . KQ414804.1 31104 31605 + 165 M 44 132 G 0 6 M 25 75 G 0 3 M 74 222 G 1 0 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31105 31605 165 + . gene_id 4 ; sequence NvOr14 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31105 31605 . + . KQ414804.1 exonerate:protein2genome:local exon 31105 31605 . + . insertions 9 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 31105 31605 165 + . alignment_id 4 ; Query NvOr14 ; Align 31105 90 132 ; Align 31243 134 75 ; Align 31321 159 222 ; Align 31543 234 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr14 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 162 -> 221 Target range: 44874 -> 45051 163 : LeuTyrMetIleSerTyrPheProTyrAspThrGlnValSerProAsnTyrGluIleThr : 182 ||| !.!. !:!!|||||||||||||||!:!.!.||||||||||||||||||.!!||| LeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThr 44875 : CTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACA : 44932 183 : TrpLeuGlyGlnCysPheSerAsnIlePheAlaAlaGlyAlaPheSerAlaValAspAla : 202 !:!!!.!||| !.!.:!! !.!!!:!|||||| !.!!!:!!!!|||||||||.!! ValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThr 44933 : GTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACT : 44992 203 : PhePheAlaValLeuValLeuHisLeuCysCysGlnLeuSerIleLeuArgLysGlu : 221 |||.!!!.!:!!|||:!!||||||:!!||| ! |||||||||! !||||||!!.||| PheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArgAsnGlu 44993 : TTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGAAACGAA : 45051 vulgar: NvOr14 162 221 . KQ414804.1 44874 45051 + 159 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44875 45051 159 + . gene_id 5 ; sequence NvOr14 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44875 45051 . + . KQ414804.1 exonerate:protein2genome:local exon 44875 45051 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44875 45051 159 + . alignment_id 5 ; Query NvOr14 ; Align 44875 163 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr14 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 320 -> 403 Target range: 39938 -> 40265 321 : TyrValAlaGluGluLeuArgPheGluSerThrGluLeuAspTyrAlaAlaTyrAspSer : 340 |||:::...::: ...||| ||||||! !:!!! ! ! :!!|||||||||!!! TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 341 : AspTrpTyrAsnLeuProProLysAspThrLysLeuLeuLeuLeuLeuMetHisArgSer : 360 :!!||||||:!!|||||||||||| !!.!! ! !|||:!!:!!:!!!!: !|||:!! AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 361 : ArgLysProLeuGluIleThrAlaGlyLysPheCysAlaPheSerLeuArgLeuTyrCys : 380 !:! ! !!!!!:!!|||||||||||||||||| !! !!|||||||||..!|||!:! ! GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsn 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAAC : 40116 381 : SerIleLeu{L} >>>> Target Intron 1 >>>> {ys}ThrSerGlyGlyTyr : 389 :!!:!: !{:} 78 bp {!!}||||||!.!|||||| AlaValSer{G}+- +-{ln}ThrSerAlaGlyTyr 40117 : GCTGTGAGT{C}ga.........................aa{AA}ACGTCTGCTGGATAT : 40221 390 : LeuSerMetLeuLeuAlaValLysAspArgLeuValValGlu : 403 ||||||:!!|||||||||:!!|||||||||||||||! !||| LeuSerValLeuLeuAlaMetLysAspArgLeuValGluGlu 40222 : CTTTCCGTGTTGCTAGCTATGAAAGACAGACTGGTCGAAGAG : 40265 vulgar: NvOr14 320 403 . KQ414804.1 39938 40265 + 155 M 63 189 S 0 1 5 0 2 I 0 74 3 0 2 S 1 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40265 155 + . gene_id 6 ; sequence NvOr14 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39939 40128 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40128 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40129 40130 . + . intron_id 1 ; splice_site "GA" KQ414804.1 exonerate:protein2genome:local intron 40129 40206 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40205 40206 . + . intron_id 0 ; splice_site "AA" KQ414804.1 exonerate:protein2genome:local cds 40207 40265 . + . KQ414804.1 exonerate:protein2genome:local exon 40207 40265 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40265 155 + . alignment_id 6 ; Query NvOr14 ; Align 39939 321 189 ; Align 40209 385 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr14 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 19 -> 94 Target range: 44146 -> 44368 20 : PheValGlyValTrpProAsnProGluGlySerGluThrThrPheGluThrIleGlnCys : 39 |||:!!|||:!!||||||... ||| ... ..! ! ..!!:! !! !..! PheMetGlyIleTrpProGlu---GluArgLysTrpAsnGlnProSerSerTyrLeuAla 44147 : TTCATGGGAATCTGGCCagag---gaaagaaaatggaaCCAACCATCGAGTTACCTAGCT : 44201 40 : IleIleValThrLeuThrMetIleIlePheAlaAsnIleAlaGlnThrValLysValPhe : 59 :!!||| !..!|||! !|||.!!:!!|||!.! !:!! !!||||||:!!!!.:!!! LeuIleProValLeuMetMetPheLeuPheValCysValProGlnThrIleAsnLeuSer 44202 : CTAATACCAGTTCTCATGATGTTTCTCTTCGTTTGTGTCCCACAAACGATCAATCTTTCA : 44261 60 : MetValTrpGlyAsnLeuAsnSerValIleGluIleLeuThrThrAlaAspMetProIle : 79 .!.:!!||||||:!!!!!|||! !|||:!!|||! !|||:!!! !!.!:!!!!: !!||| PheIleTrpGlyAspPheAsnLeuValValGluAsnLeuSerMetGlyAsnIleThrIle 44262 : TTCATCTGGGGTGATTTTAATTTAGTGGTAGAGAATCTATCCATGGGTAACATAACAATC : 44321 80 : PheValAlaLeuMetLysPheLeuValAlaTrpTyrAsnArgLys : 94 !:!!:!!|||:!!||| !:!!!.! !||| !||| !!||| ThrIleSerLeuLeuLysThrIleAlaPheTrpIleAsnGlyLys 44322 : ACTATTTCCCTTCTGAAGACCATCGCTTTTTGGATCAACGGCAAA : 44368 vulgar: NvOr14 19 94 . KQ414804.1 44146 44368 + 113 M 7 21 G 1 0 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44147 44368 113 + . gene_id 7 ; sequence NvOr14 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44147 44368 . + . KQ414804.1 exonerate:protein2genome:local exon 44147 44368 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 44147 44368 113 + . alignment_id 7 ; Query NvOr14 ; Align 44147 20 21 ; Align 44168 28 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr13 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 173 Query range: 342 -> 421 Target range: 39938 -> 40253 343 : TyrValThrGluIleLeuArgCysLysSerLeuGluLeuSerTyrAlaValTyrAspCys : 362 |||::: :::||| ... ||| !! !:!!.!! ! :!!!.!||||||||| TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 363 : AspTrpThrIleLeuProAlaLysGluAlaArgIleLeuLeuLeuIleLeuValArgThr : 382 :!!||| ! !|||||| !!|||.!.||| ! |||:!!:!!:!::!! !|||.!! AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 383 : GlnHisProPheGluIleThrAlaGlyLysPheAlaSerPheSerLeuProPheTyrCys : 402 ||| !!|||:!!||||||||||||||||||::! !!||||||||| !.!.!:! ! GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsn 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAAC : 40116 403 : Arg >>>> Target Intron 1 >>>> IleLeuLysThrSerAlaGlyTyrLeuS : 413 ! 78 bp :!!||||||||||||||||||||||||| Ala++ ++ValLeuLysThrSerAlaGlyTyrLeuS 40117 : GCTgt.........................agGTTTTAAAAACGTCTGCTGGATATCTTT : 40227 414 : erMetLeuLeuAlaValLysLysArg : 421 ||:!!|||||||||:!!||| ! ||| erValLeuLeuAlaMetLysAspArg 40228 : CCGTGTTGCTAGCTATGAAAGACAGA : 40253 vulgar: NvOr13 342 421 . KQ414804.1 39938 40253 + 173 M 61 183 5 0 2 I 0 74 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40253 173 + . gene_id 1 ; sequence NvOr13 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39939 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40253 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40253 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40253 173 + . alignment_id 1 ; Query NvOr13 ; Align 39939 343 183 ; Align 40200 404 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr13 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 168 Query range: 187 -> 279 Target range: 36764 -> 37037 188 : LeuTyrMetLysGlySerPheProTyrAspValGlnSerSerProAsnTyrGluLeuSer : 207 ||| !!!: !!.!!!!||||||||||||..!.!.!.!|||||||||||||||:!!!!! LeuLeuIleProAlaThrPheProTyrAspThrAsnLysSerProAsnTyrGluIleThr 36765 : CTACTTATCCCGGCCACATTTCCATACGACACGAATAAAAGTCCTAATTACGAAATTACT : 36822 208 : IleLeuGlyGlnLeuLeuSerAsnValPheAlaSerThrSerPheSerSerAlaAspSer : 227 |||||||||!!!:!!.!!!..|||!!.::!:!!! !!!!!:!|||!!! !|||!!! TrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSerCysPheAspThr 36823 : TGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGATACG : 36882 228 : PhePheIleValLeuMetPheHisLeuIleGlyGlnLeuSerIleLeuLysLeuThrIle : 247 ||| !! !||||||:!!!!.|||:!! !|||||||||!!!:!!|||::::!!.!!:!! PheValAlaValLeuValLeuHisIleCysGlyGlnLeuThrValLeuArgIleAlaLeu 36883 : TTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTC : 36942 248 : LeuAspLeuProSerLysIleGluAsnSerAspAspArgSerLysPheIleAspArgPhe : 267 !:!!||| :!!!!.! !! !.!|||:!! !||||||||| !!!:|||!!. GluAsnLeu---AlaAsnThrThrIleLysAspAsnTyrSerLysPheGlnGluArgLeu 36943 : GAGAATCTT---GCTAACACGACAATAAAAGACAACTACAGCAAGTTCCAAGAACGATTA : 36999 268 : AlaPheValHisMetArgHisAsnArgLeuTrpArg : 279 !.!!:!:!! |||!!.|||!:!|||!::||| GlyTyrIleValHisArgGlnAsnGlnLeuPheArg 37000 : GGATACATTGTGCACAGGCAGAATCAATTGTTCAGG : 37037 vulgar: NvOr13 187 279 . KQ414804.1 36764 37037 + 168 M 63 189 G 1 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36765 37037 168 + . gene_id 2 ; sequence NvOr13 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36765 37037 . + . KQ414804.1 exonerate:protein2genome:local exon 36765 37037 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 36765 37037 168 + . alignment_id 2 ; Query NvOr13 ; Align 36765 188 189 ; Align 36954 252 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr13 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 154 -> 244 Target range: 44772 -> 45045 155 : MetThrGluGlyThrLeuLeuThrGlnCysValValGlyLeuPheArgProIleSerTyr : 174 !!:|||..! !|||:!!:!!!:!... |||:!! !!! !.!! ! !|||!!!||| IleThrArgLysThrIleIleSerSerThrValLeuCysHisIleValValIleThrTyr 44773 : ATCACCAGAAAGACTATAATAAGCAGCACAGTGTTATGTCACATTGTGGTCATCACTTAT : 44830 175 : AlaPheLysThrAspLeuAsnGlnSerIleGluTrpPro<->LeuTyrMetLysGlySer : 193 !||| ! ! !|||!.!::!!.! !... ! !! ||| !.!.:::!.!! ! IlePheLeuArgPheLeuThrArgLysTyrSerGlyThrArgLeuLeuPheArgAlaTyr 44831 : ATATTTCTACGATTCCTCACCAGGAAGTACAGCGGCACCAGACTACTCTTCCGTGCTTAT : 44890 194 : PheProTyrAspValGlnSerSerProAsnTyrGluLeuSerIleLeuGlyGlnLeuLeu : 213 |||||||||||| !.!. !|||||||||||||||!!!!!!:!::!!!.!|||:!!:!! PheProTyrAspSerAspValSerProAsnTyrGluPheThrValIleAlaGlnIleIle 44891 : TTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACAGTGATTGCTCAAATCATA : 44950 214 : SerAsnValPheAlaSerThrSerPheSerSerAlaAspSerPhePheIleValLeuMet : 233 :!! ! !!!:!|||:!!|||!!!!:!!!!:!!!.!|||!!!|||.!!:!!:!!|||!!: AlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThrPheIleValMetLeuIle 44951 : GCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACTTTCATTGTAATGTTAATT : 45010 234 : PheHisLeuIleGlyGlnLeuSerIleLeuLys : 244 .!.|||:!! !||||||||||||! !|||!:! LeuHisValCysGlyGlnLeuSerAsnLeuArg 45011 : CTGCACGTTTGTGGACAACTTTCGAATTTGAGA : 45045 vulgar: NvOr13 154 244 . KQ414804.1 44772 45045 + 139 M 33 99 G 0 3 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44773 45045 139 + . gene_id 3 ; sequence NvOr13 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44773 45045 . + . KQ414804.1 exonerate:protein2genome:local exon 44773 45045 . + . insertions 3 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44773 45045 139 + . alignment_id 3 ; Query NvOr13 ; Align 44773 155 99 ; Align 44875 188 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr13 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 350 -> 418 Target range: 34381 -> 34668 351 : LysSerLeuGluLeuSerTyrAlaValTyrAspCysAspTrpThrIleLeuProAlaLys : 370 :!!||| !|||:!!||| !!:!!!.!|||!!:! :!!||| !! !:!! !! !! ! GlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProPro 34382 : CAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCA : 34439 371 : GluAlaArgIleLeuLeuLeuIleLeuValArgThrGlnHisProPheGluIleThrAla : 390 ||||||!:! !||||||!!!|||:!! !|||||| !.!|||.!! :!:|||||| GluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAla 34440 : GAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCA : 34499 391 : GlyLysPheAlaSerPheSerLeuProPheTyrCysArg >>>> Target Intron : 404 |||||||||::!!!!||||||:!! !.!.!:! !!! ! 83 bp GlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34500 : GGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt................... : 34543 405 : 1 >>>> IleLeuLysThrSerAlaGlyTyrLeuSerMetLeuLeuAlaVal : 418 ||||||||||||:!! !||||||||||||:!:||||||.!!||| ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeuThrVal 34544 : ......agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTCACAGTT : 34668 vulgar: NvOr13 350 418 . KQ414804.1 34381 34668 + 138 M 53 159 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34382 34668 138 + . gene_id 4 ; sequence NvOr13 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34382 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34382 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34668 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34668 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34382 34668 138 + . alignment_id 4 ; Query NvOr13 ; Align 34382 351 159 ; Align 34624 404 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr13 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 350 -> 404 Target range: 51888 -> 52050 351 : LysSerLeuGluLeuSerTyrAlaValTyrAspCysAspTrpThrIleLeuProAlaLys : 370 ::!|||:!!|||:!!:!! !!|||!.!||||||! !!!:||| !! !||| !! !!||| GlnSerValGluIleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLys 51889 : caGAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAA : 51946 371 : GluAlaArgIleLeuLeuLeuIleLeuValArgThrGlnHisProPheGluIleThrAla : 390 .!.|||!:!:!:||||||:!!|||:!! !|||.!!::! |||.!.:!!||||||||| AsnAlaLysLeuLeuLeuIleIleMetArgArgAlaArgLeuProLeuGlnIleThrAla 51947 : AATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCA : 52006 391 : GlyLysPheAlaSerPheSerLeuProPheTyrCysArgIle : 404 |||!:!||||||!!!|||!!!||| !.!.|||! !:!:!: GlyArgPheAlaThrPheThrLeuMetLeuTyrSerGlnVal 52007 : GGTAGATTTGCTACTTTCACTCTGATGCTGTATTCACAGGTa : 52050 vulgar: NvOr13 350 404 . KQ414804.1 51888 52050 + 127 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51889 52050 127 + . gene_id 5 ; sequence NvOr13 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 51889 52050 . + . KQ414804.1 exonerate:protein2genome:local exon 51889 52050 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51889 52050 127 + . alignment_id 5 ; Query NvOr13 ; Align 51889 351 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr15 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 201 Query range: 295 -> 383 Target range: 51726 -> 52050 296 : GlnAspAspValValValGluLeuIleValMetThrPhePheThrLeuGlyPheIleTyr : 315 .!.!!::!!:::::: ::::::::: !!:!! !|||!:!..!:!! ! ! !!: AspGluAsnMetIlePheGlnIleLeuPheLeuLeuPheTyrValValTyrValMetLeu 51727 : GATGAAAACAtgattttccaaattctctTTTTGCTGTTCTACGTGGTTTACGTGATGCTA : 51784 316 : SerMetPheValTyrCysTyrValAlaGluCysLeuSerThrGlu >>>> Target I : 331 ..!:!:|||:!!||||||||||||!.!||| ! ||||||..!||| 60 GlnLeuPheLeuTyrCysTyrValGlyGluArgLeuSerValGlu++ 51785 : CAATTATTCTTGTATTGTTACGTGGGTGAAAGGCTTTCCGTTGAGgt............. : 51834 332 : ntron 1 >>>> SerLeuAlaLeuSerSerAlaIlePheAspAsnThrTrpTyrAspL : 346 bp |||:!!! !:!!:!!!:!||| !!:!|||::! !||||||:!!| ++SerValGluIleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnL 51835 : ............agAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAATGGTACAATT : 51937 347 : euProProLysHisAlaLysLeuLeuLeuLeuProLeuGlnArgThrGlyLysProLeuI : 366 || !!||||||:!!|||||||||||||||:!! !:!!!:!|||.!! !! !|||||| euSerProLysAsnAlaLysLeuLeuLeuIleIleMetArgArgAlaArgLeuProLeuG 51938 : TGTCTCCGAAAAATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGTTACCTCTAC : 51997 367 : leValThrAlaGlyLysPheValValPheSerLeuAsnLeuPheSerAsnIle : 383 !:!!|||||||||!:!|||!.!..!|||!!!|||! |||!:!|||.!.:!: lnIleThrAlaGlyArgPheAlaThrPheThrLeuMetLeuTyrSerGlnVal 51998 : AAATCACTGCAGGTAGATTTGCTACTTTCACTCTGATGCTGTATTCACAGGTa : 52050 vulgar: NvOr15 295 383 . KQ414804.1 51726 52050 + 201 M 35 105 5 0 2 I 0 56 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51727 52050 201 + . gene_id 1 ; sequence NvOr15 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51727 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51727 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52050 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52050 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51727 52050 201 + . alignment_id 1 ; Query NvOr15 ; Align 51727 296 105 ; Align 51892 331 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr15 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 325 -> 397 Target range: 34369 -> 34668 326 : CysLeuSerThrGluSerLeuAlaLeuSerSerAlaIlePheAspAsnThrTrpTyrAsp : 345 ||| !! ! !:!!||| !! !:!!|||!:!:!! !!:!!!::::!.!||||||:!! CysGlyIlePheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsn 34370 : tGTGGTATATTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAAC : 34427 346 : LeuProProLysHisAlaLysLeuLeuLeuLeuProLeuGlnArgThrGlyLysProLeu : 365 :!! !!||| !.!.||||||! !||||||!!! !:!!!!.||||||!.!:::|||||| ValSerProProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeu 34428 : GTCTCACCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTT : 34487 366 : IleValThrAlaGlyLysPheValValPheSerLeuAsnLeuPheSerAsn >>>> Ta : 383 !:!!||||||||||||||| !..!||||||:!!.!.:!!||||||!.! CysLeuThrAlaGlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34488 : TGCTTGACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt....... : 34543 384 : rget Intron 1 >>>> IleIleLysThrSerAlaGlyTyrLeuSerMetLeuLeuA : 396 83 bp |||:!:||||||:!! !||||||||||||:!:||||||. ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeuT 34544 : ..................agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTCA : 34663 397 : laLeu : 397 !!:!! hrVal 34664 : CAGTT : 34668 vulgar: NvOr15 325 397 . KQ414804.1 34369 34668 + 160 M 57 171 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34370 34668 160 + . gene_id 2 ; sequence NvOr15 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34370 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34370 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34668 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34668 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34370 34668 160 + . alignment_id 2 ; Query NvOr15 ; Align 34370 326 171 ; Align 34624 383 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr15 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 85 -> 235 Target range: 36527 -> 36965 86 : LysHisValGlyIleAlaTyrAsnAsnLysValLeuTyrLysLeuLeuTyrLeuIleSer : 105 |||! ::: :::!..::! !!.!||| |||:!! !! !|||! ! LysLeuIlePheThrIleHisThrSerLeuAlaLeuValPheLeuMetSerGlnIlePhe 36528 : AAACtgattttcacaattcacACGTCTCTAGCGCTAGTATTCTTAATGAGCCAAATATTC : 36585 106 : GluAspTrpLysGluValThrLysGluSerGluLysLysValMetTrpGlnLysAlaArg : 125 !!:|||||| !||| !! ! !||| !!!:::: ! ..!||| !:!!! |||!:! AspAspTrpAlaGluProIleProGluValAspArgHisThrMetLeuLysThrAlaLys 36586 : GACGACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACGATGCTGAAGACCGCGAAA : 36645 126 : LeuSerArgIlePheThrMetIleGluValSerLeuGlyLeuGlyArgLeuPheIleHis : 145 :!!||||||!!:.!.:!!!!::!! !! !||| !! !! !! !:!!!!. ! ! IleSerArgMetIleSerIleValCysSerIleLeuThrTyrValMetValLeuAlaPhe 36646 : ATTAGTCGAATGATATCCATAGTCTGTTCTATCCTGACGTATGTCATGGTTTTGGCCTTC : 36705 146 : ThrIleArgMetThrTyrAlaMetLeuHisProThrSerPheAspProThrGlyLysLeu : 165 ! !! !...! !!::::!! :!!!!. !|||||| ! !..!||| !||| LeuSerLeuGlnIleTrpSerSerMetGlnAsnThrSerGluPheAsnValGlyGlyLeu 36706 : TTGTCACTTCAAATTTGGAGCAGCATGCAAAACACCTCGGAGTTCAACGTAGGAGGACTA : 36765 166 : IleArgProSerTyrMetArgGlyTyrPheIleTyrAspSerGlnSerThrProIleTyr : 185 :!!! !|||:!! ||| !||||||!!!.!.!.!!:!|||! !||| LeuIleProAla------------ThrPheProTyrAspThrAsnLysSerProAsnTyr 36766 : CTTATCCCGGCC------------ACATTTCCATACGACACGAATAAAAGTCCTAATTAC : 36813 186 : GluIleThrTrpGlyCysGlnPheValAlaThrAlaPheGlyGlyCysAlaPheAlaSer : 205 |||||||||||| ! ! |||||||||!.!|||!.!!!..!!!.! ..!!:!:!!!!! GluIleThrTrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSerCys 36814 : GAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGC : 36873 206 : AlaAspAlaLeuPheValAlaLeuValPheHisLeuCysGlyGlnLeuThrAsnLeuGln : 225 !|||.!!!!! !!!.!!.!||||||!!.|||:!!||||||||||||||| !|||!:: PheAspThrPheValAlaValLeuValLeuHisIleCysGlyGlnLeuThrValLeuArg 36874 : TTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACTGTTCTCCGC : 36933 226 : ThrGluPheArgGluValGlyLysAsnThr : 235 ! !! .!!..!.!.:!!!.!!!.!..||| IleAlaLeuGluAsnLeuAlaAsnThrThr 36934 : ATTGCCCTCGAGAATCTTGCTAACACGACA : 36965 vulgar: NvOr15 85 235 . KQ414804.1 36527 36965 + 137 M 84 252 G 4 0 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36528 36965 137 + . gene_id 3 ; sequence NvOr15 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36528 36965 . + . KQ414804.1 exonerate:protein2genome:local exon 36528 36965 . + . insertions 0 ; deletions 4 KQ414804.1 exonerate:protein2genome:local similarity 36528 36965 137 + . alignment_id 3 ; Query NvOr15 ; Align 36528 86 252 ; Align 36780 174 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr15 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 170 -> 228 Target range: 44880 -> 45054 171 : MetArgGlyTyrPheIleTyrAspSerGlnSerThrProIleTyrGluIleThrTrpGly : 190 .!.|||!.!|||||| !|||||||||.!. !!:!|||! !||||||.!!||| ! ! PheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThrValIle 44881 : TTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACAGTGATT : 44938 191 : CysGlnPheValAlaThrAlaPheGlyGlyCysAlaPheAlaSerAlaAspAlaLeuPhe : 210 ..!|||.!!:!!|||.!! !!:!!.!!.! !.!!!:!.!!:!!!.!|||.!!!!!.!! AlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThrPheIle 44939 : GCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACTTTCATT : 44998 211 : ValAlaLeuValPheHisLeuCysGlyGlnLeuThrAsnLeuGlnThrGluPhe : 228 ||| !|||:!!.!.|||:!!||||||||||||:!!||||||::!!.!|||||| ValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArgAsnGluPhe 44999 : GTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGAAACGAATTC : 45054 vulgar: NvOr15 170 228 . KQ414804.1 44880 45054 + 133 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44881 45054 133 + . gene_id 4 ; sequence NvOr15 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44881 45054 . + . KQ414804.1 exonerate:protein2genome:local exon 44881 45054 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44881 45054 133 + . alignment_id 4 ; Query NvOr15 ; Align 44881 171 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr15 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 321 -> 401 Target range: 39938 -> 40256 322 : TyrValAlaGluCysLeuSerThrGluSerLeuAlaLeuSerSerAlaIlePheAspAsn : 341 |||:::...::: ::: ||| !!.!:!!.!!..!:!! !!:!||| ! TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 342 : ThrTrpTyrAspLeuProProLysHisAlaLysLeuLeuLeuLeuProLeuGlnArgThr : 361 !.!||||||||||||||||||||||||||| ! !|||:!!:!! !:!! |||.!! AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 362 : GlyLysProLeuIleValThrAlaGlyLysPheValValPheSerLeuAsnLeuPheSer : 381 ! ! !!!!! !:!!||||||||||||||| ! !|||||||||.!.||||||!:! GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsn 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAAC : 40116 382 : AsnIleIle{L} >>>> Target Intron 1 >>>> {ys}ThrSerAlaGlyTyr : 390 !:!:! !{:} 78 bp {!!}||||||||||||||| AlaValSer{G}+- +-{ln}ThrSerAlaGlyTyr 40117 : GCTGTGAGT{C}ga.........................aa{AA}ACGTCTGCTGGATAT : 40221 391 : LeuSerMetLeuLeuAlaLeuArgGluLysLeu : 401 ||||||:!!|||||||||:!!!:!!!:!:!||| LeuSerValLeuLeuAlaMetLysAspArgLeu 40222 : CTTTCCGTGTTGCTAGCTATGAAAGACAGACTG : 40256 vulgar: NvOr15 321 401 . KQ414804.1 39938 40256 + 132 M 63 189 S 0 1 5 0 2 I 0 74 3 0 2 S 1 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40256 132 + . gene_id 5 ; sequence NvOr15 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39939 40128 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40128 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40129 40130 . + . intron_id 1 ; splice_site "GA" KQ414804.1 exonerate:protein2genome:local intron 40129 40206 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40205 40206 . + . intron_id 0 ; splice_site "AA" KQ414804.1 exonerate:protein2genome:local cds 40207 40256 . + . KQ414804.1 exonerate:protein2genome:local exon 40207 40256 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40256 132 + . alignment_id 5 ; Query NvOr15 ; Align 39939 322 189 ; Align 40209 386 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr11FIX Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 236 Query range: 28 -> 251 Target range: 30782 -> 31509 29 : SerGlyTyrAspIleAlaValGlyProCysArgPhePheLeuArgIlePheGlyIleTrp : 48 ||||||! ! :!!|||:!!||| ! !|||!:: !:!!..!:!: !!||||||||| SerGlyLeuLysValAlaLeuGlyTrpAsnArgTrpAsnMetGluLeuValGlyIleTrp 30783 : TCAGGTTTGAAGGTAGCACTTGGATGGAACCGTTGGAACATGGAACTGGTTGGAATTTGG : 30840 49 : ProAspProPheValGluSerSerAlaLeuGluHisLeuArgAlaLeuIleValSerSer : 68 |||!!:||| ! !.....!..! !! ! !:!!!!!!:!||||||:!: !!! !! ! ProGluProSerArgSerAspGlnArgTrpProAsnPheLysAlaLeuLeuPheIlePhe 30841 : CCAGAACCGAGCAGATCTGATCAACGATGGCCGAATTTCAAGGCTTTGCTGTTCATTTTT : 30900 69 : ThrMetValPhePheAlaThrIleThrGlnThrAlaLysAsnValGlnValTrpGlyAsp : 88 ...::::::||||||...||| ! !!|||!:!!.!!!. :!! :!!||||||||| ValIleIlePhePheGlyThrGlyProGlnSerValAsnLeuLeuPheIleTrpGlyAsp 30901 : GtgataatattttttggaaCCGGACCTCAGAGCGTGAATCTACTTTTCATATGGGGAGAC : 30960 89 : LeuAsnValValThrGluIleSerIleAsnSerGluValProThrSerThrAlaAlaVal : 108 |||...:!!|||||||||! ! ! !!..:!!.!.:!!||| !! !!.!||| !:!! LeuGlyLeuValThrGluAsnLeuSerThrAlaAsnIleProGlyIleAsnAlaMetMet 30961 : CTTGGATTGGTCACGGAAAATCTGTCCACGGCTAATATTCCCGGCATAAACGCCATGATG : 31020 109 : LysValAlaGlyIleTrpTyrTyrArgArg{A} >>>> Target Intron 1 >>>> : 119 |||:!! ! ! !|||:!!:!!||| !{|} 67 bp LysLeuIleIleAlaTrpHisHisArgAsp{A}++ 31021 : AAACTGATTATCGCCTGGCATCACAGAGAT{G}gt......................... : 31056 120 : {la}LeuArgLysLeuMetIleGlnIleThrAsnAspTrpArgSerProHisGlyPro : 137 {||}.!!!:! :!!!!:! !....!! !:!!||||||!:!!!! !!... ++{la}PheLysProValIleLysSerPheTyrAspAspTrpLysThrSerArgThrLys 31057 : ag{ct}tTCAAGCCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACcaag : 31174 138 : IleGluLeuGluIleMetGluGluAsnAlaArgPheSerArgLeuValSerAlaThrCys : 157 ||| ||| !||| !:!!!..|||!:!|||:!!!:!! !:!!||| ! !||| GluGluLysGluThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIleTrpCys 31175 : gaggagaaggagacCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGGTGC : 31234 158 : IlePheLeuAlaAspAlaThrPheAlaAlaGlnPheIleIleAlaValLeuArgIleAsp : 177 ! ! ||| |||!!..!! ! !:!! ! ! !|||||| SerValLeu---------ThrLeuThrMetValThrValTyrLeuSerLeuArgAlaTrp 31235 : TCAGTATTA---------ACCTTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGG : 31285 178 : AlaGlnAsnArgLeuGlnAlaAsnGlyThrAspIleAspArgProLeuTyrMetArgAla : 197 ! !!!:!|||.!. ! ..! ! ! ||||||! !||| ! !!.! IleIleTyrGlnLeuAspArgAlaAsnGlnLysGlnAspArgLeuLeuLeuTyrProGly 31286 : ATCATCTACCAGCTTGATAGGGCAAACCAGAAACAGGATCGTCTGCTCCTGTACCCTGGC : 31345 198 : SerPheProTyrAspSerGlnIleSerProAsnTyrGluLeuThrLeuAlaGlyGlnLeu : 217 ! !||||||!:!|||! !!:: !! ! ! !! !||| ! !||||||:!! TyrPheProPheAspIleArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnVal 31346 : TATTTTCCCTTCGATATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTG : 31405 218 : PheSerAsnPhePheAlaAlaThrThrTyrThrSerIleAspSerLeuPheIleValLeu : 237 .!!:!! !:!! !|||!.!! !!:!||||||!!!:!:|||!!!!!!.!! :!!||| LeuAlaAlaTyrSerAlaValIleSerTyrThrThrValAspThrPheIleAlaMetLeu 31406 : CTCGCAGCGTATTCCGCTGTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTG : 31465 238 : MetLeuHisLeuCysGlyGlnLeuSerValLeuArgLeuLys : 251 !!::!!|||:!!|||||||||!!!..!:!!||||||! !||| IleMetHisIleCysGlyGlnPheGluIleLeuArgGlnLys 31466 : ATAATGCACATATGCGGACAATTTGAGATACTGAGACAGAAA : 31509 vulgar: NvOr11FIX 28 251 . KQ414804.1 30782 31509 + 236 M 90 270 S 0 1 5 0 2 I 0 63 3 0 2 S 1 2 M 41 123 G 3 0 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 30783 31509 236 + . gene_id 1 ; sequence NvOr11FIX ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 30783 31053 . + . KQ414804.1 exonerate:protein2genome:local exon 30783 31053 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 31054 31055 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 31054 31120 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 31119 31120 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 31121 31509 . + . KQ414804.1 exonerate:protein2genome:local exon 31121 31509 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 30783 31509 236 + . alignment_id 1 ; Query NvOr11FIX ; Align 30783 29 270 ; Align 31123 120 123 ; Align 31246 164 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr11FIX Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 217 Query range: 192 -> 277 Target range: 44874 -> 45129 193 : LeuTyrMetArgAlaSerPheProTyrAspSerGlnIleSerProAsnTyrGluLeuThr : 212 ||| !.!.||||||! !|||||||||||||||.!.:!!|||||||||||||||!!!||| LeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThr 44875 : CTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACA : 44932 213 : LeuAlaGlyGlnLeuPheSerAsnPhePheAlaAlaThrThrTyrThrSerIleAspSer : 232 :!! !!.!|||:!!.!.:!! !|||!:!||||||||||||||||||:!!:!!|||!!! ValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThr 44933 : GTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACT : 44992 233 : LeuPheIleValLeuMetLeuHisLeuCysGlyGlnLeuSerValLeuArgLeuLysPhe : 252 !!!.!!:!!:!!|||!!:||||||:!!||||||||||||||| !|||||| !:!!||| PheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArgAsnGluPhe 44993 : TTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGAAACGAATTC : 45052 253 : ProGlyLeuLysGlyCysSerGlyAsnGluPheAlaGluLysIleAlaTyrIleHisArg : 272 ! !|||:!!!.!|||..! ! !!!. !! !|||:!:!.! ! ||| !:! GlyLysLeuGlnAlaCysAspLysValThrLeuGlnAlaLysLeuGlyLysIleValGln 45053 : GGTAAGCTTCAAGCATGCGATAAAGTAACATTACAGGCGAAGTTGGGGAAAATCGTGCAG : 45112 273 : ArgHisAspGlnLeu : 277 !:!|||!!: ! ||| LysHisGluTyrLeu 45113 : AAACACGAATATCTT : 45129 vulgar: NvOr11FIX 192 277 . KQ414804.1 44874 45129 + 217 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44875 45129 217 + . gene_id 2 ; sequence NvOr11FIX ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44875 45129 . + . KQ414804.1 exonerate:protein2genome:local exon 44875 45129 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44875 45129 217 + . alignment_id 2 ; Query NvOr11FIX ; Align 44875 193 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr11FIX Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 163 Query range: 350 -> 404 Target range: 51888 -> 52050 351 : LysSerValAspIleSerAspAlaAlaTyrGlnCysAspTrpTyrAspLeuThrProGln : 370 ::!||||||!!:|||:!!:!!|||||||||.!.! !!!:||||||:!!|||:!!|||:!! GlnSerValGluIleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLys 51889 : caGAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAA : 51946 371 : GlnSerLysGlnLeuIleIleIleMetLeuArgAlaArgArgProLeuGlnValThrAla : 390 .!.:!!||| !|||:!!|||||||||! !||||||||| !|||||||||:!!|||||| AsnAlaLysLeuLeuLeuIleIleMetArgArgAlaArgLeuProLeuGlnIleThrAla 51947 : AATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCA : 52006 391 : GlyLysPheValAlaPheSerLeuSerLeuTyrCysSerIle : 404 |||!:!|||!.!.!!|||!!!|||! !||||||! ..!:!: GlyArgPheAlaThrPheThrLeuMetLeuTyrSerGlnVal 52007 : GGTAGATTTGCTACTTTCACTCTGATGCTGTATTCACAGGTa : 52050 vulgar: NvOr11FIX 350 404 . KQ414804.1 51888 52050 + 163 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51889 52050 163 + . gene_id 3 ; sequence NvOr11FIX ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 51889 52050 . + . KQ414804.1 exonerate:protein2genome:local exon 51889 52050 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51889 52050 163 + . alignment_id 3 ; Query NvOr11FIX ; Align 51889 351 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr11FIX Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 168 -> 255 Target range: 36692 -> 36953 169 : PheIleIleAlaValLeuArgIleAspAlaGlnAsnArgLeuGlnAlaAsnGlyThrAsp : 188 .!.:!!:!:||| !!||| !:!!.!. ! !!:!!!!:!!||| !!.!..! ! ! MetValLeuAlaPheLeuSerLeuGlnIleTrpSerSerMetGlnAsnThrSerGluPhe 36693 : ATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGCAGCATGCAAAACACCTCGGAGTTC : 36750 189 : IleAspArgProLeuTyrMetArgAlaSerPheProTyrAspSerGlnIleSerProAsn : 208 ! !! !! !||| !!!:! !|||!!!||||||||||||!!!.!.! !||||||||| AsnValGlyGlyLeuLeuIleProAlaThrPheProTyrAspThrAsnLysSerProAsn 36751 : AACGTAGGAGGACTACTTATCCCGGCCACATTTCCATACGACACGAATAAAAGTCCTAAT : 36810 209 : TyrGluLeuThrLeuAlaGlyGlnLeuPheSerAsnPhePheAlaAlaThrThrTyrThr : 228 ||||||:!!|||! ! !||||||!!! ! .!!!.. ! !!.::!|||! ! !|||:!! TyrGluIleThrTrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSer 36811 : TACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCC : 36870 229 : SerIleAspSerLeuPheIleValLeuMetLeuHisLeuCysGlyGlnLeuSerValLeu : 248 !!!.!!|||!!!!!! !! !||||||:!!||||||:!!||||||||||||!!!|||||| CysPheAspThrPheValAlaValLeuValLeuHisIleCysGlyGlnLeuThrValLeu 36871 : TGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACTGTTCTC : 36930 249 : ArgLeuLysPheProGlyLeu : 255 |||:!! .!! !..!||| ArgIleAlaLeuGluAsnLeu 36931 : CGCATTGCCCTCGAGAATCTT : 36953 vulgar: NvOr11FIX 168 255 . KQ414804.1 36692 36953 + 154 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36693 36953 154 + . gene_id 4 ; sequence NvOr11FIX ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36693 36953 . + . KQ414804.1 exonerate:protein2genome:local exon 36693 36953 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36693 36953 154 + . alignment_id 4 ; Query NvOr11FIX ; Align 36693 169 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr11FIX Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 351 -> 404 Target range: 39965 -> 40124 352 : SerValAspIleSerAspAlaAlaTyrGlnCysAspTrpTyrAspLeuThrProGlnGln : 371 |||..!! |||.!!.!.:!!||||||.!.|||:!!|||||||||||| !!|||:!!!!. SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 372 : SerLysGlnLeuIleIleIleMetLeuArgAlaArgArgProLeuGlnValThrAlaGly : 391 :!! ..!|||:!!|||:!:!!:! !||||||!:! ! !!!!!|||:!!||||||||| AlaValSerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGly 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGA : 40083 392 : LysPheValAlaPheSerLeuSerLeuTyrCysSerIle : 404 |||||| ! !!|||||||||..!|||!:! !:!!:!: LysPheSerProPheSerLeuGluLeuPheAsnAlaVal 40084 : AAATTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTGTG : 40124 vulgar: NvOr11FIX 351 404 . KQ414804.1 39965 40124 + 136 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40124 136 + . gene_id 5 ; sequence NvOr11FIX ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39966 40124 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40124 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39966 40124 136 + . alignment_id 5 ; Query NvOr11FIX ; Align 39966 352 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr11FIX Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 350 -> 404 Target range: 34381 -> 34543 351 : LysSerValAspIleSerAspAlaAlaTyrGlnCysAspTrpTyrAspLeuThrProGln : 370 :!!||| !!!:!!:|||:!!:!!||||||:!!! :!!||||||:!!:!!:!!|||! ! GlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProPro 34382 : CAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCA : 34439 371 : GlnSerLysGlnLeuIleIleIleMetLeuArgAlaArgArgProLeuGlnValThrAla : 390 :!!:!!||| |||:!!.!!||||||! !|||.!! !||||||||| :!!|||||| GluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAla 34440 : GAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCA : 34499 391 : GlyLysPheValAlaPheSerLeuSerLeuTyrCysSerIle : 404 ||||||||| !.!!||||||:!!..!:!!!:! !!!!!:!! GlyLysPheSerThrPheSerMetGluMetPheSerThrVal 34500 : GGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTGTA : 34543 vulgar: NvOr11FIX 350 404 . KQ414804.1 34381 34543 + 130 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34382 34543 130 + . gene_id 6 ; sequence NvOr11FIX ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 34382 34543 . + . KQ414804.1 exonerate:protein2genome:local exon 34382 34543 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34382 34543 130 + . alignment_id 6 ; Query NvOr11FIX ; Align 34382 351 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 357 -> 424 Target range: 39938 -> 40139 358 : TyrValGlyGluIleValSerAspLysAlaLysLysValGlyAlaLysThrTyrMetIle : 377 |||::: :::||| ::: ::!! !:!!||| !....!!||| ! TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 378 : AsnTrpTyrAspLeuProProLysLysGlyLeuCysIleGlyLeuIleIleSerValAla : 397 |||||||||||||||||||||||| ! !.!:!!! :!!! !:!!:!:|||!!! !||| AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 398 : HisSerProValGlnLeuThrAlaGlyLysMetLeuGluLeuSerMetTyrAsnPheGly : 417 !!. ! !! !!|||:!!||||||||||||.!. ! !!!|||:!: ! |||..! GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsn 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAAC : 40116 418 : CysIleMetLysSerThrAla : 424 ..!:!:! ::!! !! !||| AlaValSerArgIleIleAla 40117 : GCTGTGAGTCGAATTATCGCT : 40139 vulgar: NvOr3 357 424 . KQ414804.1 39938 40139 + 106 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40139 106 + . gene_id 1 ; sequence NvOr3 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39939 40139 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40139 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40139 106 + . alignment_id 1 ; Query NvOr3 ; Align 39939 358 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 349 -> 426 Target range: 39938 -> 40244 350 : TyrIleGlyGluLeuLeuThrGluGlnSerLysLysIleGlyGluValThrTyrAlaIle : 369 |||||| :::::: ... |||! !||||||:!! !.!!|||! ! ! TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 370 : AsnTrpTyrThrLeuSerGlyLysArgAlaValAspLeuIleMetIleIleMetIleAla : 389 ||||||||| !||| !! !|||!.!||||||...|||:!!!!::!:||| !||| AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 390 : SerCysTyrProAlaArgIleThrAlaGlyLysMetValAsnLeuSerLeuGlySerPhe : 409 ..! !! !!:!|||||||||||||||.!. ! !!!!||||||! ! !||| Gln---ValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPhe 40057 : CAA---GTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTT : 40113 410 : CysAsn >>>> Target Intron 1 >>>> ValIleLysThrSerAlaThrTyrL : 420 ! ! 78 bp |||:!!|||||||||||| !|||| AsnAla++ ++ValLeuLysThrSerAlaGlyTyrL 40114 : AACGCTgt.........................agGTTTTAAAAACGTCTGCTGGATATC : 40224 421 : euAsnLeuLeuArgThrMet : 426 ||::!:!!|||! !.!!||| euSerValLeuLeuAlaMet 40225 : TTTCCGTGTTGCTAGCTATG : 40244 vulgar: NvOr5 349 426 . KQ414804.1 39938 40244 + 100 M 41 123 G 1 0 M 20 60 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40244 100 + . gene_id 1 ; sequence NvOr5 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39939 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40121 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40244 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40244 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40244 100 + . alignment_id 1 ; Query NvOr5 ; Align 39939 350 123 ; Align 40062 392 60 ; Align 40200 412 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 635 Query range: 20 -> 402 Target range: 278567 -> 280551 21 : AspPheGluTyrAlaValGlnIleThrArgTrpLeuLeuGlnProLeuGlyIleTrpP : 40 |||!:: !|||::!||||||!!:!.!||||||!!!|||:!!|||:!!|||:!!|||| AspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpP 278568 : GATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGC : 278625 41 : roMetLysSerSerThrPhePheSerSerIleLeuArgSerLeuSerIleAlaThrCy : 59 ||:!:!.. !!!!..! ! !! !..!! :!!!!!|||:!! !:!!||| ! roLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIl 278626 : CTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAAT : 278682 60 : sThr<->PheLeuLeuGlyPheLeuLeuValProCysCysLeuHisMetPheLeuIle : 77 !!:! ||||||:!!|||||||||||||||||||||..!||| !! ! ||| ! eSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAsp 278683 : CAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGAC : 278739 78 : GluLys<->AspLeuGlyValArgLeuLysMetIleGlyProLeuSerPheCysLeuM : 96 :!!! ||||||! !..!!:!:!!||||||||||||||||||||||||||| !| LysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrM 278740 : AAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGA : 278799 97 : etAsnIlePheLysTyrTyrAlaValLeuIleLysAspGlyGlnIleSerSerCysIl : 115 || ! .!!||||||||| !:!!:!! :::! !|||:!!|||.!!!.!|||:! etAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysVa 278800 : TGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGT : 278856 116 : eValAspMetAlaGlyAspTrpHis<-><-><->ArgLeuGluGlySerGluGlnArg : 131 : !|||!!: ! !|||||| ! !! !... ...|||:::||| lAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArg 278857 : GAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagaga : 278913 132 : GlyTyrMetLeuGluAsnAlaLysThrAlaArgValPheThrThrIleCysAlaLeuP : 151 ||| !!!:!:!|||!:!! !!.!||| !!!..!!! !.!! !!||| !| GluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyP 278914 : gagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTT : 278973 152 : heMetTyrGlyGlyGlyLeuProTyrSerThrIleLeuProLeu<->ThrArgAspAl : 169 ||||||||..!||||||:!! !|||!!!.!!:!::!!|||||| .!! ! !.! heMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgTh 278974 : TCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCAC : 279030 170 : aIleIleValGlyAsnAspSerTyrArgHisLeuAlaTyrProSerTyrPheIlePhe : 188 ! |||:!!! !|||!!:!!! ||| !! !|||!:!|||! !||| ! !.!! rGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeu 279031 : GGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTC : 279087 189 : PheAsnProHisIleArgProIleTyrAspLeuValPhePheAlaHisCysLeuCysG : 208 .!!:!!|||!.!! !!!!||| !:!!!::!!||| ||| !!!.||||||..!! LeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaA 279088 : CTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCG : 279147 209 : lyPheValMetTyrSerValThrCysGlyValCysSerIleAlaIleLeuCysIleMe : 227 .!||||||:!:|||||||||||| !|||!.!||||||:!: ! !:!!! !:!!|| laPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMe 279148 : CGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCAT : 279204 228 : tHisIleCysSerGlnCysSerIleThrSerAlaThrLeuArgSerLeuThrSerAsp : 246 ||||:!!|||.!!|||! !!!!||| ! !.!!! !||| !!.!|||! !..!! tHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGly 279205 : GCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGA : 279261 247 : ValAspGluLysThrPheGlyLysIleValThrGlnHisLeuArgSerLeuLysPheA : 266 ||| ! ! !!:!! ! ! !!..! ! !|||!..||| !!..!:!! .!!! ValLysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIle---IleG 279262 : GTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATC---ATCG : 279318 267 : laSerLysLeuGluLysIle{Le} >>>> Target Intron 1 >>>> {u}As : 274 ! ! ! |||:!!! !:!:{ } 678 bp {!}:! luHisHisLeuLysIleLeu{Gl}++ ++{y}As 279319 : AGCATCATCTGAAGATACTG{GG}gt.........................ag{A}GA : 280020 275 : nAspMetCysLeuValGluLeuIleGlyCysThrPheAsnIleCysMetLeuGlyTyr : 293 !|||:!:|||! ! !!.!.:!!:!! !...! !.!! .!! !|||! !..!! pAspLeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerLeu 280021 : CGACTTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGTTG : 280077 294 : TyrPheIleThrGluPheGluGlnSerGluThrValGlyThrIleThrTyrSerLeuL : 313 ! !!.!! !|||!::||||||!:!!!:.!!:!!||||||.!!||||||! !:!!! SerValPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetP 280078 : TCAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGT : 280137 314 : euLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyAspLeuLeuTh : 332 !!|||||||||||||||||||||:!!||||||.!!||||||||||||!!::!!|||:! heLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSe 280138 : TTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTC : 280194 333 : rGluGln >>>> Target Intron 2 >>>> CysGluAsnIleGlyGluValA : 342 !|||||| 74 bp ||| !!!.:!!|||! ! !. rGluGln++ ++CysLeuLysValGlyValSerT 280195 : CGAACaggt.........................agTGCTTAAAAGTCGGCGTGTCAA : 280298 343 : laTyrMetIleAsnTrpTyrGlnPheSerGlyLysAspAlaArgAsnIleIleLeuIl : 361 !!|||||||||:!!||||||!::!!. !!|||||| ! |||!:!..!:!:|||||||| hrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIl 280299 : CTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGAT : 280355 362 : eValAlaSerThrGlnArgProValValLeuThrAlaGlyLysMetValThrLeuSer : 380 | !!||| !:!!.!. ! !!:!! !|||||||||||||||!!::!! !|||||| ePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSer 280356 : ATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCT : 280412 381 : IleArgSerPheCysAsn >>>> Target Intron 3 >>>> ValIleLysAl : 390 :!!!!!|||||||||!:! 71 bp |||:!!|||.! LeuSerSerPheCysSer++ ++ValLeuLysTh 280413 : TTAAGCAGCTTCTGCAGCgt.........................agGTGTTAAAAAC : 280513 391 : aSerValThrTyrLeuAsnMetLeuArgThrLeuThr : 402 !:!! !!.!!||||||!:!:!:||||||||||||||| rAlaPheAlaTyrLeuSerLeuLeuArgThrLeuThr 280514 : GGCATTCGCATATCTGAGCTTATTACGTACGCTTACC : 280551 vulgar: NvOr10 20 402 . KQ414889.1 278567 280551 + 635 M 40 120 G 0 3 M 19 57 G 0 3 M 44 132 G 0 9 M 42 126 G 0 3 M 98 294 G 1 0 M 8 24 S 0 2 5 0 2 I 0 674 3 0 2 S 1 1 M 61 183 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278568 280551 635 + . gene_id 1 ; sequence NvOr10 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278568 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278568 279340 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 280018 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280017 280018 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280019 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280019 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280551 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278568 280551 635 + . alignment_id 1 ; Query NvOr10 ; Align 278568 21 120 ; Align 278691 61 57 ; Align 278751 80 132 ; Align 278892 124 126 ; Align 279021 166 294 ; Align 279315 265 24 ; Align 280020 274 183 ; Align 280277 335 156 ; Align 280504 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 412 Query range: 13 -> 254 Target range: 303166 -> 304827 14 : LysSerIleArgAsnAlaGlnAspPheGluTyrAlaValGlnIleThrArgTrpLeuL : 33 ::!!:!:!:!.! !! !:!!|||.!!! |||!.!..!:!! !!:!!:!|||:!!| ArgAsnLeuAsnTyrLysLysAspIleValTyrValThrLysHisSerLysTrpIleL 303167 : CGGAATTTGAATTACAAGAAAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCC : 303224 34 : euGlnProLeuGlyIleTrpProMetLysSerSerThrPhePheSerSerIleLeuAr : 52 ||:!! !!||||||||||||||| !! !..! ! !:!!.!!.!!|||! euLysSerLeuGlyIleTrpProAlaValLeuAspGlu---ThrAlaGlyPheLeuPr 303225 : TGAAGTCCCTTGGTATTTGGCCAGCCGTGTTGGACGAA---ACCGCAGGATTCCTACC : 303278 53 : gSerLeuSerIleAlaThrCysThrPheLeuLeuGlyPheLeuLeuValProCysCys : 71 !!.!:!!!!!|||!.! ! !!!.!!!.:!!||| !||| !:!!:!!|||||| ! oLysIleThrIleGlyLeuSerAsnLeuValLeuLeuPheThrValIleProCysIle 303279 : AAAAATCACCATTGGACTCAGTAATTTGGTTCTATTATTCACCGTGATACCGTGTATT : 303335 72 : LeuHisMetPheLeuIleGluLysAspLeuGlyValArgLeuLysMetIleGlyProL : 91 ||||||!!:.!.!!! !:!!|||||| ! !:!!|||||||||:!:.!!|||! !| LeuHisIleIlePheGluGlnLysAspThrIleIleArgLeuLysLeuPheGlyLeuL 303336 : CTACACATAATATTCGAACAAAAGGATACGATAATAAGATTGAAACTATTCGGTCTGC : 303395 92 : euSerPheCysLeuMetAsnIlePheLysTyrTyrAlaValLeuIleLysAspGlyGl : 110 ||||||||||||||!!:::::!:.!.||||||!::|||:!! !! ::! ! !:: euSerPheCysLeuIleSerLeuMetLysTyrTrpAlaLeuAlaThrArgLysProAr 303396 : TGAGTTTCTGTTTGATCTCGTTGATGAAGTATTGGGCCCTCGCCACGCGGAAACCAAG : 303452 111 : nIleSerSerCysIleValAspMetAlaGlyAspTrpHisArg >>>> Target I : 125 !|||!.!..!||||||! !!!::!! !.!!|||||| ! ..! 938 gIleLysGluCysIleGluGluValGlnSerAspTrpLysGlu++ 303453 : GATCAAAGAATGTATAGAAGAGGTGCAAAGTGATTGGAAAGAGgt............. : 303499 126 : ntron 1 >>>> LeuGluGlySerGluGlnArgGlyTyrMetLeuGluAsnAlaLy : 139 bp :!!|||..! !..!.!.|||! ! ||||||:!! !!!.!:! ++ValGluSerLeuArgAspArgGluMetMetLeuLysTyrGlyGl 303500 : ............agGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGGGCA : 304477 140 : sThrAlaArgValPheThrThrIleCysAlaLeuPheMetTyrGlyGlyGlyLeuPro : 158 !! !!.!||| !.!.|||! !|||||||||:!!||||||||| !|||||| ! ! nMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThrIle 304478 : AATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACCATT : 304534 159 : TyrSerThrIleLeuProLeu<->ThrArgAspAlaIleIleValGlyAsnAspSerT : 177 ||| !|||:!!:!!! !!!! ||| !! !:!: !! ! !||| !!!! TyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgThrI 304535 : TATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTACGA : 304594 178 : yrArgHisLeuAlaTyrProSerTyrPheIlePhePheAsnProHisIleArgProIl : 196 !!:!! |||!.!||||||!!!||| ! !!!.|||:!! !!!.! !!!!||||| leLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIl 304595 : TTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTAT : 304651 197 : eTyrAspLeuValPhePheAlaHisCysLeuCysGlyPheValMetTyrSerValThr : 215 ||||!!:||||||!:!|||!.!||||||:!!||||||!:!|||!!:||||||:!!||| eTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThr 304652 : TTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACC : 304708 216 : CysGlyValCysSerIleAlaIleLeuCysIleMetHisIleCysSerGlnCysSerI : 235 ..!|||!.!|||.!!:!!||| !|||! ! !! ||| !|||.!!||| !..!| AlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspI 304709 : GCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATA : 304768 236 : leThrSerAlaThrLeuArgSerLeuThrSerAspValAspGluLysThrPheGlyLy : 254 ||..!! !:!! !||| !!..!|||..!!:!..! !!!:..!... !!!.! !|| leValMetSerArgLeuGlyAspLeuValAsnSerLysGluSerSerAspLeuAspLy 304769 : TCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCATCTGATTTAGATAA : 304825 255 : s : 254 | s 304826 : A : 304827 vulgar: NvOr10 13 254 . KQ414889.1 303166 304827 + 412 M 32 96 G 1 0 M 78 234 5 0 2 I 0 934 3 0 2 M 41 123 G 0 3 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303167 304827 412 + . gene_id 2 ; sequence NvOr10 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303167 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303167 303496 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304827 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304827 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303167 304827 412 + . alignment_id 2 ; Query NvOr10 ; Align 303167 14 96 ; Align 303263 47 234 ; Align 304435 125 123 ; Align 304561 166 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 409 Query range: 262 -> 402 Target range: 286693 -> 287338 263 : LeuLysPheAlaSerLysLeuGluLysIleLeuAsnAspMetCysLeuValGluLeuI : 282 !!!!..||| !|||:!!:!!||| !:!!||||||!!:!!:|||!!!||||||:!!| PheSerPheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValI 286694 : TTCAGTTTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGA : 286751 283 : leGlyCysThrPheAsnIleCysMetLeuGlyTyrTyrPheIleThr >>>> Targ : 298 |||||||||||!!.|||||||||.!.||||||||||||!!.:!:||| leGlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeuThr++ 286752 : TTGGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTACTGACGgt......... : 286801 299 : et Intron 1 >>>> GluPheGluGlnSerGluThrValGlyThrIleThrTyrS : 311 80 bp |||!::|||||||||||||||:!!|||||||||||||||! ++GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrC 286802 : ................agGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATT : 286918 312 : erLeuLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyAspLe : 330 !! !||||||:!!|||!!!|||||||||:!!||||||.!!||||||||||||!!::! ysThrLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIl 286919 : GCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAAT : 286975 331 : uLeuThrGluGln >>>> Target Intron 2 >>>> CysGluAsnIleGlyG : 340 !|||:!!|||||| 74 bp ||| !!!.:!!||| eLeuSerGluGln++ ++CysLeuLysValGlyL 286976 : TCTCTCCGAACaggt.........................agtGCTTAAAAGTCGGCT : 287079 341 : luValAlaTyrMetIleAsnTrpTyrGlnPheSerGlyLysAspAlaArgAsnIleIl : 359 ! !.!!|||||||||:!!||||||!::!!. !!|||||| |||!:!..!:!:|| euSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIl 287080 : TGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGAT : 287136 360 : eLeuIleValAlaSerThrGlnArgProValValLeuThrAlaGlyLysMetValThr : 378 ||||||| !!||| !:!!.!. ! !!:!! !|||||||||||||||!!::!! ! eLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAsp 287137 : ACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGAT : 287193 379 : LeuSerIleArgSerPheCysAsn >>>> Target Intron 3 >>>> ValIl : 388 ||||||:!!!!!|||||||||!:! 71 bp |||:! LeuSerLeuSerSerPheCysSer++ ++ValLe 287194 : CTCTCTTTAAGCAGCTTCTGCAGCgt.........................agGTGTT : 287294 389 : eLysAlaSerValThrTyrLeuAsnMetLeuArgThrLeuThr : 402 :|||:!!:!! !!.!!||||||!:!:!:||||||||||||||| uLysSerAlaPheAlaTyrLeuSerLeuLeuArgThrLeuThr 287295 : GAAATCGGCATTCGCATATCTGAGCTTATTACGTACGCTAACC : 287338 vulgar: NvOr10 262 402 . KQ414889.1 286693 287338 + 409 M 35 105 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286694 287338 409 + . gene_id 3 ; sequence NvOr10 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286694 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286694 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287220 287221 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 287220 287290 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287289 287290 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 287291 287338 . + . KQ414889.1 exonerate:protein2genome:local exon 287291 287338 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286694 287338 409 + . alignment_id 3 ; Query NvOr10 ; Align 286694 263 105 ; Align 286879 298 111 ; Align 287064 335 156 ; Align 287291 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 408 Query range: 20 -> 247 Target range: 284514 -> 285213 21 : AspPheGluTyrAlaValGlnIleThrArgTrpLeuLeuGlnProLeuGlyIleTrpP : 40 |||!:: !|||::!||||||!!:!.!||||||!!!|||:!!|||:!!|||:!!|||| AspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpP 284515 : GATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGC : 284572 41 : roMetLysSerSerThrPhePheSerSerIleLeuArgSerLeuSerIleAlaThrCy : 59 ||:!:!.. !!!!..! ! !! !..!! :!!!!!|||:!! !:!!||| ! roLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIl 284573 : CTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAAT : 284629 60 : sThr<->PheLeuLeuGlyPheLeuLeuValProCysCysLeuHisMetPheLeuIle : 77 !!:! ||||||:!!|||||||||||||||||||||..!||| !! ! ||| ! eSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAsp 284630 : CAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGAC : 284686 78 : GluLys<->AspLeuGlyValArgLeuLysMetIleGlyProLeuSerPheCysLeuM : 96 :!!! ||||||! !..!!:!:!!|||||||||||||||||||||||||||:!!| LysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetM 284687 : AAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGA : 284746 97 : etAsnIlePheLysTyrTyrAlaValLeuIleLysAspGlyGlnIleSerSerCysIl : 115 || .!!||||||||| !:!!:!! :::! !|||:!!|||.!!..!|||:! etAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysVa 284747 : TGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGT : 284803 116 : eValAspMetAlaGlyAspTrpHisArgLeu<-><-><->GluGlySerGluGlnArg : 131 : !|||!!: !!.!|||||| !! ! ! ... ...|||:::||| lLysAspIleArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArg 284804 : GAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagaga : 284860 132 : GlyTyrMetLeuGluAsnAlaLysThrAlaArgValPheThrThrIleCysAlaLeuP : 151 ||| !!!:!:!|||!:!! !!.!||| !!!..!!! !.!!|||||| !| GluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyP 284861 : gagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTT : 284920 152 : heMetTyrGlyGlyGlyLeuProTyrSerThrIleLeuProLeu<->ThrArgAspAl : 169 ||||||||..!||||||!!! !|||!!!|||:!::!!|||||| ||| ! !.! heMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgTh 284921 : TCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCAC : 284977 170 : aIleIleValGlyAsnAspSerTyrArgHisLeuAlaTyrProSerTyrPheIlePhe : 188 ! |||:!!! !|||!!:!!! ||| !! !|||!:!|||! !||| ! !.!! rGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeu 284978 : GGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTT : 285034 189 : PheAsnProHisIleArgProIleTyrAspLeuValPhePheAlaHisCysLeuCysG : 208 .!!:!!|||!.!! !!!!||| !:!!!::!!||| ||| !!!.||||||..!! LeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaA 285035 : CTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCG : 285094 209 : lyPheValMetTyrSerValThrCysGlyValCysSerIleAlaIleLeuCysIleMe : 227 .!||||||!!:|||||||||||| !|||!.!||||||:!:||| !:!!! !:!!|| laPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMe 285095 : CGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCAT : 285151 228 : tHisIleCysSerGlnCysSerIleThrSerAlaThrLeuArgSerLeuThrSerAsp : 246 ||||:!!|||.!!|||! !!!!||| ! !.!!! !||| !!.!|||..!..!! tHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGly 285152 : GCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGA : 285208 247 : Val : 247 ||| Val 285209 : GTG : 285213 vulgar: NvOr10 20 247 . KQ414889.1 284514 285213 + 408 M 40 120 G 0 3 M 19 57 G 0 3 M 46 138 G 0 9 M 40 120 G 0 3 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284515 285213 408 + . gene_id 4 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284515 285213 . + . KQ414889.1 exonerate:protein2genome:local exon 284515 285213 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284515 285213 408 + . alignment_id 4 ; Query NvOr10 ; Align 284515 21 120 ; Align 284638 61 57 ; Align 284698 80 138 ; Align 284845 126 120 ; Align 284968 166 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 347 Query range: 6 -> 293 Target range: 194120 -> 196381 7 : IleSerAsnLeuIleGluLeuLysSerIleArgAsnAlaGlnAspPheGluTyrAlaV : 26 |||:::... .!.! !:::!:!:!!!.! !! ! !||| !|||||||||| IleAlaLysLysSerAsnTyrArgAsnValAsnTyrLysLeuAspThrGluTyrAlaV 194121 : atcgcgaagaaatcgAATTACCGCAACGTCAATTACAAATTGGACACCGAGTACGCTG : 194178 27 : alGlnIleThrArgTrpLeuLeuGlnProLeuGlyIleTrpProMetLysSerSerTh : 45 ||!:!:!!.!!!:! !|||||| !|||:!!||||||||||||! !:!!..!||| alArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProArgGluAspSer-- 194179 : TTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAAGGGAGGATTCT-- : 194235 46 : rPhePheSerSerIleLeuArgSerLeuSerIleAlaThrCysThrPheLeuLeuGly : 64 .!! !..!!!!:!!! !! !! ! !..!! !!.!..! ! ! !|||:!! !! -LeuArgAspArgValArgLeuPheAlaGlnThrGlyValValPheAlaLeuMetCys 194236 : -CTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTTCGCTTTGATGTGC : 194289 65 : PheLeuLeuValProCysCysLeuHisMetPheLeuIleGluLysAspLeuGlyValA : 84 ||||||||||||||| ! :!!:!!! !:!!!! ! :!!|||||| ! ! PheLeuLeuValProHisValIleTyrThrTyrPheAspCysGluAspLeuThrArgT 194290 : TTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAGGATCTGACGAGGT : 194349 85 : rgLeuLysMetIleGlyProLeuSerPheCysLeuMetAsnIlePheLysTyrTyrAl : 103 !:!!|||:!:|||!.! !!! ! !||| !!|||:!! |||.!!|||!:!!::.! yrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleIleLysPheTrpTh 194350 : ACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCATCAAGTTCTGGAC : 194406 104 : aValLeuIleLysAspGlyGlnIleSerSerCysIleValAspMetAlaGlyAspTrp : 122 !:!!:!!:!:!!. !:!!|||!!!! !|||:!::!!!!:|||! ! !.!.!:: rMetIleValAsnArgLysGluIleArgPheCysLeuLeuGluMetGluThrGlnTyr 194407 : GATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGATGGAGACGCAGTAC : 194463 123 : HisArgLeuGluGlySerGluGlnArgGlyTyrMetLeuGluAsnAlaLysThrAlaA : 142 ... !:!!||| !!..!|||.!.||| ! ||| !.!. !||||||! !!.!| ArgAspValGluCysGluGluAspArgGlnValMetThrAsnCysAlaLysIleGlyA 194464 : AGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGCGCGAAAATCGGCC : 194523 143 : rgValPheThrThrIleCysAlaLeuPheMetTyrGlyGlyGlyLeuProTyrSerTh : 161 || !!|||||||||:!:! ! ! !.!! |||||||||!.!||||||||| !! rgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIl 194524 : GATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTTTGCCGTACCACAT : 194580 162 : rIleLeuProLeuThrArgAspAlaIleIleValGlyAsnAspSerTyrArg<->His : 179 !||||||||||||! ! !!!: !|||:!! !! !:!!:!!||| !!:! ! ! eIleLeuProLeuMetSerGluArgIleValLysGluAspAsnSerThrGlnIlePro 194581 : TATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAACAGTACTCAGATACCT : 194637 180 : LeuAlaTyrProSerTyrPheIlePhePheAsnProHisIleArgProIleTyrAspL : 199 ||| !!||| !||| !!!:!:!!|||||| !.!. ! !|||||||||!!:: LeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAspSerProIleTyrGluI 194638 : CTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGACTCGCCGATTTACGAGA : 194697 200 : euValPhePheAlaHisCysLeuCysGlyPheValMetTyrSerValThrCysGlyVa : 218 !!..!||| !!:!!!!. ||| !.!! !:!!!!:! |||..!!.!||||||:! leThrPheValSerGlnIleLeuIleSerSerIleIleLeuSerThrAsnCysGlyIl 194698 : TTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGTCGACGAATTGTGGGAT : 194754 219 : lCysSerIleAlaIleLeuCysIleMetHisIleCysSerGlnCysSerIleThrSer : 237 !! !|||:!:!.! ! ! !||||||||| !|||.!! !! !..!:!:|||||| eTyrSerLeuValAlaThrIleIleMetHisCysCysGlyLeuPheGluValThrSer 194755 : TTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTTGTTCGAAGTGACCAGC : 194811 238 : AlaThrLeuArgSerLeuThrSerAspValAspGluLysThrPheGlyLys<-><->< : 255 !! !:!!..!!!!:!!:!! ! !..!! :!! ! ! ! |||!:! ArgArgMetGluThrIleSerValProThrGlyLysAspIleArgGlyArgLeuArgA 194812 : AGAAGGATGGAGACTATTTCTGTGCCCACTGGGAAGGATATTCGGGGTAGACTTAGGG : 194871 256 : ->IleValThrGlnHisLeuArgSerLeu{Ly} >>>> Target Intron 1 >> : 264 :!!||| ! ||||||!:!:!!:!!{||} 1391 bp spValValGlnPheHisLeuLysAlaIle{Ly}++ 194872 : ACGTCGTTCAGTTTCATCTGAAAGCAATT{AA}gt....................... : 194905 265 : >> {s}PheAlaSerLysLeuGluLysIleLeuAsnAspMetCysLeuValGluLeu : 281 {|}||||||..!! !:!!|||||| !|||||| !:!!! !||| !|||:!! ++{s}PheAlaGluMetIleGluLysAlaLeuAsnIleValPheLeuSerGluMet 194906 : ..ag{a}tTCGCTGAAATGATCGAGAAAGCACTGAACATCGTGTTTCTATCAGAGATG : 196343 282 : IleGlyCysThrPheAsnIleCysMetLeuGlyTyr : 293 :!!|||||||||.!!! !||||||.!.|||! !||| LeuGlyCysThrIleIleIleCysPheLeuGluTyr 196344 : CTTGGCTGCACTATCATCATATGTTTCCTGGAATAC : 196381 vulgar: NvOr10 6 293 . KQ414889.1 194120 196381 + 347 M 38 114 G 1 0 M 133 399 G 0 3 M 76 228 G 0 9 M 9 27 S 0 2 5 0 2 I 0 1387 3 0 2 S 1 1 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194121 196381 347 + . gene_id 5 ; sequence NvOr10 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 194121 194902 . + . KQ414889.1 exonerate:protein2genome:local exon 194121 194902 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 194903 194904 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 194903 196293 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 196292 196293 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 196294 196381 . + . KQ414889.1 exonerate:protein2genome:local exon 196294 196381 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194121 196381 347 + . alignment_id 5 ; Query NvOr10 ; Align 194121 7 114 ; Align 194235 46 399 ; Align 194637 179 228 ; Align 194874 255 27 ; Align 196295 265 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 345 Query range: 16 -> 244 Target range: 289714 -> 290404 17 : ArgAsnAlaGlnAspPheGluTyrAlaValGlnIleThrArgTrpLeuLeuGlnProL : 36 ||| !!! ! !|||.!....|||.!! !!:!!:!! !!.!|||:!!|||:!!|||: ArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleLeuLysProI 289715 : CGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCTTGAAACCGA : 289772 37 : euGlyIleTrpPro<-><->MetLysSerSerThrPhePheSerSerIleLeuArgSe : 53 !!|||!!:!::||| .!.!.. !!:!!!:! !..! !!! ! ! leGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgThrAlaSerVa 289773 : TAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGT : 289829 54 : rLeuSerIleAlaThrCysThrPheLeuLeuGlyPheLeuLeuValProCysCysLeu : 72 !||| !||| !..!||| !! :!!||| !|||:!!:!!||||||! ! !!! ! lLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValProPheSerHis 289830 : GTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCAT : 289886 73 : HisMetPheLeuIleGluLysAspLeuGlyValArgLeuLysMetIleGlyProLeuS : 92 |||:!:.!.!!!! !!!:!!.|||:!!..!..! !:!!|||! :!!|||||||||! HisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuGlyProLeuT 289887 : CACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCGGACCGTTGA : 289946 93 : erPheCysLeuMetAsnIlePheLysTyrTyrAlaValLeuIleLysAspGlyGlnIl : 111 !!|||||||||! !...!!|||||||||! ! ! !! !!!:|||! !..! !|| hrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGlySerAlaIl 289947 : CGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGAT : 290003 112 : eSerSerCysIleValAspMetAlaGlyAspTrpHisArgLeuGluGlySerGluGln : 130 |.!! !!|||:!: ! !!!!:! ! !!|||||| ! ! !|||...! !..!!!:!!. eGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAspGluAspHis 290004 : CGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCAT : 290060 131 : ArgGlyTyrMetLeuGluAsnAlaLysThrAlaArgValPheThrThrIleCysAlaL : 150 |||! ! !||||||..! !!!.!! !! !::!||| !.!!! !! !:!:||||||: ArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysLeuCysAlaI 290061 : CGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGA : 290120 151 : euPheMetTyrGlyGlyGlyLeuProTyrSerThrIleLeuProLeuThrArgAspAl : 169 !!|||:!!||| !||||||||| !!|||!:!|||:!!:!!|||||| ! ! ! lePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPheSerLysLy 290121 : TCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAA : 290177 170 : aIleIleValGlyAsnAspSerTyrArgHisLeuAlaTyrProSerTyrPheIlePhe : 188 !! !:!: !||||||! !!! !|||! !|||.!!||||||.!!||| ||| sSerValAsnGlyAsnValThrIleArgProLeuThrTyrProGlyTyrGluGluPhe 290178 : GAGCGTGAACGGTAACGTGACTATCAGACCTCTAACTTATCCCGGTTACGAGGAGTTC : 290234 189 : PheAsnProHisIleArgProIleTyrAspLeuValPhePheAlaHisCysLeuCysG : 208 |||:!! !!!.! !!!||| |||!!::!!||||||! ! !||||||:!!! !! PheAspValGlnLysSerProAlaTyrGluIleValPheCysMetHisCysValTyrV 290235 : TTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACG : 290294 209 : lyPheValMetTyrSerValThrCysGlyValCysSerIleAlaIleLeuCysIleMe : 227 !.!.:!!! ! !:!:!!||| !.!!.!! !|||:!:.!!! :!!! ! !! alMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePheAlaTh 290295 : TCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCAC : 290351 228 : tHisIleCysSerGlnCysSerIleThrSerAlaThrLeuArgSerLeuThr : 244 |||! !|||.!!||| !!.!||| !!!!.!! !|||..!..!|||||| rHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAspLeuThr 290352 : TCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTGACA : 290404 vulgar: NvOr10 16 244 . KQ414889.1 289714 290404 + 345 M 24 72 G 0 6 M 204 612 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289715 290404 345 + . gene_id 6 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289715 290404 . + . KQ414889.1 exonerate:protein2genome:local exon 289715 290404 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289715 290404 345 + . alignment_id 6 ; Query NvOr10 ; Align 289715 17 72 ; Align 289793 41 612 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 335 Query range: 16 -> 248 Target range: 204215 -> 204914 17 : ArgAsnAlaGlnAspPheGluTyrAlaValGlnIleThrArgTrpLeuLeuGlnProL : 36 ||| ! !:!!|||.!...!||||||..!!::.!!..!!:! !:!!||| ! !: ArgAlaGluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleV 204216 : AGGGCAGAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAG : 204273 37 : euGlyIleTrpProMetLys<->SerSerThrPhePheSerSerIleLeuArgSerLe : 54 !!||| ||||||!!: ! !:!|||:!! |||!!!!!!:!!:!!||| !!:! alGlyAlaTrpProIleProValAsnSerSerProPheThrArgLeuValArgArgIl 204274 : TCGGTGCGTGGCCGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAAT : 204330 55 : uSerIleAlaThrCysThrPheLeuLeuGlyPheLeuLeuValProCysCysLeuHis : 73 !..! !!.!..! ! ||||||... ...:!!:!!|||||| !! !|||:!! eGluHisValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyr 204331 : AGAACACGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTAC : 204387 74 : MetPheLeuIleGluLysAspLeuGlyValArgLeuLysMetIleGlyProLeuSerP : 93 :!!||||||! ||||||:!! ! !:!!|||||||||!!::!!||||||:!! ! ValPheLeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValA 204388 : GTGTTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGA : 204447 94 : heCysLeuMetAsnIlePheLysTyrTyrAlaValLeuIleLysAspGlyGlnIleSe : 112 !||| !!!:.!..!!|||||||||! !!.!:!!||| !::! !! !:!!|||.. snCysSerIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGl 204448 : ACTGCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCA : 204504 113 : rSerCysIleValAspMetAlaGlyAspTrpHisArgLeuGluGlySerGluGlnArg : 131 !!.! !!:!: ! !!!: ! !!|||||| ..! ! ! ..!|||.!.||| nLysSerLeuAsnThrIleArgArgAspTrpIleGluAlaThr---AspGluAsnArg 204505 : GAAGAGTTTGAACACCATCAGACGCGACTGGATAGAGGCTACG---GATGAAAATCGG : 204558 132 : GlyTyrMetLeuGluAsnAlaLysThrAlaArgValPheThrThrIleCysAlaLeuP : 151 ! !.!.! !..!!!.||||||! !!.!||| ! ! ! !|||...||| ! LeuIlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaT 204559 : TTGATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCA : 204618 152 : heMetTyrGlyGlyGlyLeuProTyrSerThrIleLeuProLeuThrArgAspAlaIl : 170 !|||||||||||||||||| !|||!!!||||||||||||||| !|||! .!!|| hrMetTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIl 204619 : CTATGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGAT : 204675 171 : eIleVal<->GlyAsnAspSerTyrArgHisLeuAlaTyrProSerTyrPheIlePhe : 188 |:!!..! ! !|||! !!!! |||! ||| !!! !||| !||||||:::||| eValThrProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhe 204676 : CGTAACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttc : 204732 189 : PheAsnProHisIleArgProIleTyrAspLeuValPhePheAlaHisCysLeuCysG : 208 |||||| !!!. ! !|||! !|||!!::!!||||||.!. !!!. !:!!..!| PheAsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaG 204733 : tttaacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTG : 204792 209 : lyPheValMetTyrSerValThrCysGlyValCysSerIleAlaIleLeuCysIleMe : 227 ||||||||! |||:!!|||! ! !!|||..!|||.!!!!:..! |||! !:!!:! lyPheValThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLe 204793 : GTTTTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCT : 204849 228 : tHisIleCysSerGlnCysSerIleThrSerAlaThrLeuArgSerLeuThrSerAsp : 246 :||| ||||||..! !!!||| ! ! !! !:!!!.!:!!|||..!..! ! uHisAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLys 204850 : CCACGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAG : 204906 247 : ValAsp : 248 !.!||| AlaAsp 204907 : GCGGAC : 204914 vulgar: NvOr10 16 248 . KQ414889.1 204215 204914 + 335 M 26 78 G 0 3 M 84 252 G 1 0 M 45 135 G 0 3 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204216 204914 335 + . gene_id 7 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204216 204914 . + . KQ414889.1 exonerate:protein2genome:local exon 204216 204914 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 204216 204914 335 + . alignment_id 7 ; Query NvOr10 ; Align 204216 17 78 ; Align 204297 43 252 ; Align 204549 128 135 ; Align 204687 173 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 334 Query range: 19 -> 243 Target range: 217162 -> 217843 20 : GlnAspPheGluTyrAlaValGlnIleThrArgTrpLeuLeuGlnProLeuGlyIleT : 39 ::::::...... ::!:!!||| !.!||||||||||||:!!|||:!!|||:!!| LysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuT 217163 : aaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTT : 217220 40 : rpPro<->MetLysSerSerThrPhePheSerSerIleLeuArgSerLeuSerIleAl : 57 ||||| :::!!!!!!||| ! ! !!!.!|||||| !!.!|||! !! !|| rpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAl 217221 : GGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGC : 217277 58 : aThrCysThrPheLeuLeuGlyPheLeuLeuValProCysCysLeuHisMetPheLeu : 76 | !||| ! !|||:!!.!!||||||!!!|||||||||! !:!!:!!:!!|||||| aLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeu 217278 : CTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTC : 217334 77 : IleGluLysAspLeuGlyValArgLeuLysMetIleGlyProLeuSerPheCysLeuM : 96 !! :!!|||||| !! !!:!||||||:!!.!!|||||||||! !||||||:!!| GluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValM 217335 : GAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGA : 217394 97 : etAsnIlePheLysTyrTyrAlaValLeuIleLysAspGlyGlnIleSerSerCysIl : 115 || .!! !!|||||||||:!!:!!:!!:!! ! ! !.!.!.||| !!..!|||:! etAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCysVa 217395 : TGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGT : 217451 116 : eValAspMetAlaGlyAspTrpHisArgLeuGluGlySerGluGlnArgGlyTyrMet : 134 : ! !!:! ! !!||||||...!.!:!!..! !!..!:!!.!.|||! ! ||| lArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArgGluAlaMet 217452 : GAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATG : 217508 135 : LeuGluAsnAlaLysThrAlaArgValPheThrThrIleCysAlaLeuPheMetTyrG : 154 :!!! !||||||!!. !!.!||| !!!...! !:!!|||.!!!!!|||||||||. IleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrS 217509 : ATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACA : 217568 155 : lyGlyGlyLeuProTyrSerThrIleLeuProLeuThrArgAspAlaIleIleVal<- : 173 !!||| ::: ||| ! !:!!|||:!!!:! !! !|||:!! ! erGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGl 217569 : GCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGA : 217625 174 : ><->GlyAsnAspSerTyrArgHisLeuAlaTyrProSerTyrPheIlePhePheAsn : 190 |||||| !!!!!:!! !! |||!.!!:!|||! ! !.!!.!!:!! uAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyrIleIleAsp 217626 : GAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGAT : 217682 191 : ProHisIleArgProIleTyrAspLeuValPhePheAlaHisCysLeuCysGlyPheV : 210 !!!.! !! !|||! !!!!::!!||||||||| !!!.! :!!..!||| !: ThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaL 217683 : ACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTT : 217742 211 : alMetTyrSerValThrCysGlyValCysSerIleAlaIleLeuCysIleMetHisIl : 229 !!|||:!!.!!:!!|||! !.!!.!||||||:!:||| ! !! ! :!:||| euMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAl 217743 : TGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGC : 217799 230 : eCysSerGlnCysSerIleThrSerAlaThrLeuArgSerLeu : 243 !|||.!!||| !..!:!: !! ! ! !|||!:! !||| aCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeu 217800 : CTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTA : 217843 vulgar: NvOr10 19 243 . KQ414889.1 217162 217843 + 334 M 21 63 G 0 3 M 132 396 G 0 6 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217163 217843 334 + . gene_id 8 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217163 217843 . + . KQ414889.1 exonerate:protein2genome:local exon 217163 217843 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217163 217843 334 + . alignment_id 8 ; Query NvOr10 ; Align 217163 20 63 ; Align 217229 41 396 ; Align 217631 173 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 332 Query range: 19 -> 250 Target range: 208200 -> 208902 20 : GlnAspPheGluTyrAlaValGlnIleThrArgTrpLeuLeuGlnProLeuGlyIleT : 39 .!.|||.!....!:! !|||!:::!:!.! !||| !|||:!! !:!!||| !| AsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuLysIleIleGlySerT 208201 : AACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGAAGATAATCGGCTCCT : 208258 40 : rpProMetLys<->SerSerThrPhePheSerSerIleLeuArgSerLeuSerIleAl : 57 |||||! ... ..! !!:!!!::!!...!!:!! !! !!.!! !|||! !! !!. rpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHisIleLeuLeuAsnVa 208259 : GGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCATATTCTCTTAAACGT : 208315 58 : aThrCysThrPheLeuLeuGlyPheLeuLeuValProCysCysLeuHisMetPheLeu : 76 ! ! !! !! !||||||||||||:!!:!!:!!||| ! !!:!! ! !.!!||| lLeuSerHisCysLeuLeuGlyPheIleValIleProThrGlyMetPheAlaIleLeu 208316 : ACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATGTTCGCGATCCTC : 208372 77 : IleGluLysAspLeuGlyValArgLeuLysMetIleGlyProLeuSerPheCysLeuM : 96 :!!! :!!|||!!! !! !!:!||||||!!: !.!! !!|||||||||! !:!!| ValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaLeuSerPhePheMetM 208373 : GTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGA : 208432 97 : etAsnIlePheLysTyrTyrAlaValLeuIleLysAspGlyGlnIleSerSerCysIl : 115 || .!! |||||| !:!! !:!!:::!!:|||.!.||| !!!.!|||:! etAlaPheThrLysTyrValIleMetThrValArgGluGlyAspIleArgLysCysVa 208433 : TGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGACATACGGAAGTGTGT : 208489 116 : eValAspMetAlaGlyAspTrpHisArgLeuGluGlySerGluGlnArgGlyTyrMet : 134 !! ! !!:!:! !!.!||||||...!.!:!!||| !..!|||.!.||| ! !||| lGluTyrValGluAlaAspTrpArgAsnValGluHisGluGluAspArgLysIleMet 208490 : CGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAGGACAGGAAGATCATG : 208546 135 : LeuGluAsnAlaLysThrAlaArgValPheThrThrIleCysAlaLeuPheMetTyrG : 154 |||!!:||||||!.. !|||||| !.!.! !..!||||||!.! !|||||||||| LeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysGlyAlaPheMetTyrG 208547 : TTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCGGAGCTTTCATGTACG : 208606 155 : lyGlyGlyLeuProTyrSerThrIleLeuProLeuThrArgAspAlaIleIleVal<- : 173 ||||| ::: ||| ! !|||||||||||||||||| !:!!:!!! ! lyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAspLysValValGluGl 208607 : GAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGACAAGGTCGTCGAGGA : 208663 174 : ><->GlyAsnAspSerTyrArgHisLeuAlaTyrProSerTyrPheIlePhePheAsn : 190 |||||| !!!||||||...|||!.!|||||| ! ! .!!.!!.!.:!! uGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValProLysPheIleLeuAsp 208664 : GGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCTAAGTTCATTCTGGAC : 208720 191 : ProHisIleArgProIleTyrAspLeuValPhePheAlaHisCysLeuCysGlyPheV : 210 !!.. !!!!|||:!: !!!!::!! !!!:! !.!!!.! |||! ||||||| ValArgTyrSerProValAsnGluIlePheTyrThrValGlnLeuLeuSerGlyPheV 208721 : GTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAATTGTTGTCGGGTTTCG : 208780 211 : alMetTyrSerValThrCysGlyValCysSerIleAlaIleLeuCysIleMetHisIl : 229 || :!!!:!:!!||| !|||!.!|||.!!:!:||| ||| ! |||||| alAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAl 208781 : TTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCACGC : 208837 230 : eCysSerGlnCysSerIleThrSerAlaThrLeuArgSerLeuThrSerAspValAsp : 248 |||.!!||| ..!||| !! !:!! !:!!..!!.!|||..!..!! !!!: aCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeuValAspGlyArgGlu 208838 : GTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTGGTCGATGGACGGGAG : 208894 249 : GluLys : 250 !!::!! AspGlu 208895 : GACGAG : 208902 vulgar: NvOr10 19 250 . KQ414889.1 208200 208902 + 332 M 23 69 G 0 3 M 130 390 G 0 6 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208201 208902 332 + . gene_id 9 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208201 208902 . + . KQ414889.1 exonerate:protein2genome:local exon 208201 208902 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208201 208902 332 + . alignment_id 9 ; Query NvOr10 ; Align 208201 20 69 ; Align 208273 43 390 ; Align 208669 173 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 317 Query range: 20 -> 243 Target range: 221369 -> 222047 21 : AspPheGluTyrAlaValGlnIleThrArgTrpLeuLeuGlnProLeuGlyIleTrpP : 40 :!! ! :!!! ::!||||||:!:!:!||||||:!!|||:!!|||:!!|||:!!|||| AsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleGlyValTrpP 221370 : AACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTGGC : 221427 41 : roMetLysSerSer<->ThrPhePheSerSerIleLeuArgSerLeuSerIleAlaTh : 58 ||! ..!:!!!:! :!! ! ..!!!! !||| !!!!|||! !! !!.!.. roAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLeuIleAsnValVa 221428 : CAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAACGTCGT : 221484 59 : rCysThrPheLeuLeuGlyPheLeuLeuValProCysCysLeuHisMetPheLeuIle : 77 !||| ! !|||:!! !|||||||||||||||||| !!|||:!!:!!.!!||| ! lCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyrValIleLeuGlu 221485 : TTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTCGAA : 221541 78 : GluLysAspLeuGlyValArgLeuLysMetIleGlyProLeuSerPheCysLeuMetA : 97 ! !:!!|||:!! ! !|||:!!|||:!!:!:||||||||||||||||||:!!||| ValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysValMetA 221542 : GTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGG : 221601 98 : snIlePheLysTyrTyrAlaValLeuIleLysAspGlyGlnIleSerSerCysIleVa : 116 .!!.!.||||||:!! !:!!:!!:!! ! !!:..!.!.||| !!..!||||||! laPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCysIleGl 221602 : CATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTGCATCGA : 221658 117 : lAspMetAlaGlyAspTrpHisArgLeuGluGlySerGluGlnArgGlyTyrMetLeu : 135 ! !!!:! ! !!|||||| ! !.!:!! !|||:!!.!.!:!! ! |||:!! uArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLysAspIleMetIle 221659 : GCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAGGATATAATGATA : 221715 136 : GluAsnAlaLysThrAlaArgValPheThrThrIleCysAlaLeuPheMetTyrGlyG : 155 |||||||||! !!.!||| !!!.! !! !||||||.!!!!!|||||||||.!!| GluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheMetTyrSerG 221716 : GAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGTACAGTg : 221775 156 : lyGlyLeuProTyrSerThrIleLeuProLeuThrArgAspAlaIleIleValGly<- : 174 || ::: ||| ! !:!!|||!!!!:! !! ! !||| !!.! ! lyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIleProAlaGlnAs 221776 : gtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGA : 221832 175 : ><->AsnAspSerTyrArgHisLeuAlaTyrProSerTyrPheIlePhePheAsnPro : 191 ||| :::::: ! :!!!.!!:!|||! !! .!!.!! !!:!! !! pValAsnValThrPheIleProMetValPheProPheSerArgPheIleValAspThr 221833 : TgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTCGATACT : 221889 192 : HisIleArgProIleTyrAspLeuValPhePheAlaHisCysLeuCysGlyPheValM : 211 !.. !!!!|||:!! !!!!::!!:!!|||! !!!. !:!!...||| !:!!| ArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyAlaLeuM 221890 : CGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTTGA : 221949 212 : etTyrSerValThrCysGlyValCysSerIleAlaIleLeuCysIleMetHisIleCy : 230 ||:!!|||:!!|||! !.!!.!||||||:!:!.! !:!!! ! !:!!||| !|| etHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaValHisAlaCy 221950 : TGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCTTG : 222006 231 : sSerGlnCysSerIleThrSerAlaThrLeuArgSerLeu : 243 |.!!||| ..!:!: !! !::! !|||!:! !||| sGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeu 222007 : CGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTG : 222047 vulgar: NvOr10 20 243 . KQ414889.1 221369 222047 + 317 M 24 72 G 0 3 M 129 387 G 0 6 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221370 222047 317 + . gene_id 10 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221370 222047 . + . KQ414889.1 exonerate:protein2genome:local exon 221370 222047 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221370 222047 317 + . alignment_id 10 ; Query NvOr10 ; Align 221370 21 72 ; Align 221445 45 387 ; Align 221838 174 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 312 Query range: 14 -> 243 Target range: 232432 -> 233128 15 : SerIleArgAsnAlaGlnAspPheGluTyrAlaValGlnIleThrArgTrpLeuLeuG : 34 !!!:!:!.! !.!!!:!|||!:!||||||::!:!!|||:!:!.!||||||!!!||| ThrLeuAsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuT 232433 : ACGTTGAACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGA : 232490 35 : lnProLeuGlyIleTrpProMetLysSerSerThrPhe<->PheSerSerIleLeuAr : 52 !|||:!!||| !|||||| !!!..!|||! !..!..!:!!||| hrProMetGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAl 232491 : CACCGATGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGC : 232547 53 : gSerLeuSerIleAlaThrCysThrPheLeuLeuGlyPheLeuLeuValProCysCys : 71 !!.!|||! !! ! !|||||| !! !|||:!! !! !! !:!!||||||||| ! aLysLeuLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValProCysIle 232548 : GAAACTGTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGCATT : 232604 72 : LeuHisMetPheLeuIleGluLysAspLeuGlyValArgLeuLysMetIleGlyProL : 91 ||| !!!:.!.!!! !!!:! !..!|||! !! !|||:!!||| |||||||||: LeuPheIleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProM 232605 : CTGTTCATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTA : 232664 92 : euSerPheCysLeuMetAsnIlePheLysTyrTyrAlaValLeuIleLysAspGlyGl : 110 !!||| !! !||||||..! !!!.!!.|||! !..!:!!||| !|||! ..!.! etSerHisPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAs 232665 : TGAGTCACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGA : 232721 111 : nIleSerSerCysIleValAspMetAlaGlyAspTrpHisArgLeuGluGlySerGlu : 129 .||| !! !|||:!:! !.!.:!! ! !||||||!..!.!:!!:!! ! !!! pIleLeuTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLysProVal 232722 : CATCCTCTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTC : 232778 130 : GlnArgGlyTyrMetLeuGluAsnAlaLysThrAlaArgValPheThrThrIleCysA : 149 !!.|||! ! ||||||:!!||||||||| !!.!||| !.!..!! !|||..!| HisArgAspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaA 232779 : CATCGTGATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTG : 232838 150 : laLeuPheMetTyrGlyGlyGlyLeuProTyrSerThrIleLeuProLeuThrArgAs : 168 ||!!!! !|||:!! !|||! ! ! !! !!..!! !:!! ! !||| !! !.. laPheCysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSe 232839 : CGTTTTGCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAG : 232895 169 : pAlaIleIleValGlyAsnAspSerTyrArgHisLeuAlaTyrProSerTyrPheIle : 187 !.!!.!! !|||||||||!!:|||||| ! ! ! !!! |||!!! ||| ! rThrPheTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyr 232896 : CACGTTCTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTAC : 232952 188 : <-><->PhePheAsnProHisIleArgProIleTyrAspLeuValPhePheAlaHisC : 205 .!..!.:!! !!....!!!!!|||! !!!!::!!:!!||| !! !!!.| ThrLysLeuMetAspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnC 232953 : ACGAAGCTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGT : 233012 206 : ysLeuCysGlyPheValMetTyrSerValThrCysGlyValCysSerIleAlaIleLe : 224 |||||! !||||||:!!:!! !!||||||||| |||!.!|||.!!:!!!.! !:! ysLeuSerGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaVa 233013 : GTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGT : 233069 225 : uCysIleMetHisIleCysSerGlnCysSerIleThrSerAlaThrLeuArgSerLeu : 243 ! |||||| |||.!!||| !:!:!:..!! !:!!! !||| !..!||| lLeuAlaMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeu 233070 : TCTAGCGATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTG : 233126 vulgar: NvOr10 14 243 . KQ414889.1 232432 233128 + 312 M 32 96 G 0 3 M 141 423 G 0 6 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232433 233128 312 + . gene_id 11 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232433 233128 . + . KQ414889.1 exonerate:protein2genome:local exon 232433 233128 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232433 233128 312 + . alignment_id 11 ; Query NvOr10 ; Align 232433 15 96 ; Align 232532 47 423 ; Align 232961 188 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 306 Query range: 261 -> 402 Target range: 257472 -> 258738 262 : SerLeuLysPheAlaSerLysLeuGluLysIleLeuAsnAspMetCysLeuValGluL : 281 !:!! !!..||| !||| ! :!!|||:!!:!::!!||| !!:|||!!!:!!|||| AsnCysSerPheIleSerTyrIleGluGluValMetAsnArgIleCysPheLeuGluL 257473 : AATTGCAGTTTCATATCATATATCGAGGAAGTGATGAACCGAATATGTTTTTTAGAGT : 257530 282 : euIleGlyCysThrPheAsnIleCysMetLeuGlyTyrTyrPheIleThr >>>> T : 298 ||.!! !!||||||.!. !|||||||||||||||||||||.!!:!!.!! euPheArgCysThrLeuAlaIleCysMetLeuGlyTyrTyrIleLeuAla++ 257531 : TGTTTAGATGCACGCTGGCTATATGCATGCTGGGATACTACATTCTTGCGgt...... : 257583 299 : arget Intron 1 >>>> GluPheGluGlnSerGluThrValGlyThrIleThrT : 310 684 bp |||!::... !...::: ... :::| ++GluTrpSerThrGlnAspIleGlnAsnLeuSerSerT 257584 : ...................aggaATGGTCTACGCaagatattcaaaatttgagttcgt : 258301 311 : yrSerLeuLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyAs : 329 ||! !:!!:!!||||||||||||:::||||||||||||:::...||||||||||||!! yrPheMetIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGl 258302 : aCTTTATGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGA : 258358 330 : pLeuLeuThrGluGln >>>> Target Intron 2 >>>> CysGluAsnIleG : 339 ::!!|||||||||||| 90 bp |||:!!!!.:!!| uIleLeuThrGluGln++ ++CysLysLysValG 258359 : AATATTAACAGAACAGgt.........................agTGCAAGAAAGTTG : 258478 340 : lyGluValAlaTyrMetIleAsnTrpTyrGlnPheSerGlyLysAspAlaArgAsnIl : 358 ||!!:|||!.!||||||! !:!!|||||| ! .!. !!! !||| !! !:!!:! lyAspValValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLe 258479 : GCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTT : 258535 359 : eIleLeuIleValAlaSerThrGlnArgProValValLeuThrAlaGlyLysMetVal : 377 !||||||:!!:!!||| !!:!!... ! !||| !:!!||||||||||||... uIleLeuValIleAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePhe 258536 : AATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattcttt : 258592 378 : ThrLeuSerIleArgSerPheCysAsn >>>> Target Intron 3 >>>> Va : 387 ::!|||||| !!!!||| !!:!! 69 bp || HisMetSerIleTyrThrPheSerAsp++ ++Va 258593 : cacatGTCCATTTACACATTCAGCGATgt.........................agGT : 258691 388 : lIleLysAlaSerValThrTyrLeuAsnMetLeuArgThrLeuThr : 402 |||||||.!!||| !!.!!|||||||||:!:|||||| !:!!:!! lIleLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnValSer 258692 : AATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGTATCG : 258738 vulgar: NvOr10 261 402 . KQ414889.1 257472 258738 + 306 M 36 108 5 0 2 I 0 680 3 0 2 M 37 111 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 257473 258738 306 + . gene_id 12 ; sequence NvOr10 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 257473 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257473 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 257473 258738 306 + . alignment_id 12 ; Query NvOr10 ; Align 257473 262 108 ; Align 258265 298 111 ; Align 258466 335 156 ; Align 258691 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 287 Query range: 24 -> 243 Target range: 212875 -> 213541 25 : AlaValGlnIleThrArgTrpLeuLeuGlnProLeuGlyIleTrpProMetLysSerS : 44 :::::: ! !.!||||||||||||:!!||| !|||:!:|||||| ||||||! SerIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspLysSerT 212876 : agtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCT : 212933 45 : erThrPhe<->PheSerSerIleLeuArgSerLeuSerIleAlaThrCysThrPheLe : 62 !..!! .!!..!!.!! !:!! ! !!||| !! !.!!..!||| ! !|| yrValSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLe 212934 : ACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTT : 212990 63 : uLeuGlyPheLeuLeuValProCysCysLeuHisMetPheLeuIleGluLysAspLeu : 81 |:!!|||!:!|||:!!:!!|||||| !!|||:!!:!!|||||| !! !::::::::: uIleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGluAsnIle 212991 : GATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatata : 213047 82 : GlyValArgLeuLysMetIleGlyProLeuSerPheCysLeuMetAsnIlePheLysT : 101 ...:!!:!!:!!.!!||| !!!!:!!||||||:!! :!:!::|||| PheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysT 213048 : tttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGT : 213107 102 : yrTyrAlaValLeuIleLysAspGlyGlnIleSerSerCysIleValAspMetAlaGl : 120 ||:!!:!!:!!:!!:!! ! ! !! !.!.||| !!!!!|||:!!! ! !!||| ! yrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMetLysTy 213108 : ATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATA : 213164 121 : yAspTrpHisArgLeuGluGlySerGluGlnArgGlyTyrMetLeuGluAsnAlaLys : 139 !|||||| ! !.!:!! ! !..!|||.!.!:!! ! !||| ! !||||||!.. rAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSer 213165 : TGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGC : 213221 140 : ThrAlaArgValPheThrThrIleCysAlaLeuPheMetTyrGlyGlyGlyLeuProT : 159 !!.!!:! !.!...!||||||||||||!!!||||||||| !||| ! ! !| PheGlyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheThrPheT 213222 : TTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTT : 213281 160 : yrSerThrIleLeuProLeuThrArgAspAlaIleIleValGly<-><->AsnAspSe : 176 ||! ! !:!!:!!|||:!!!:! !||| !!!::!!!.!! ! |||! !! yrPheLeuValValProIleSerAlaAspLysMetValAlaGluAspLeuAsnValTh 213282 : ATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGAC : 213338 177 : rTyrArgHisLeuAlaTyrProSerTyrPheIlePhePheAsnProHisIleArgPro : 195 !!:!|||!!.:!!!.! !||| !! .!!.!! !!:!! !!.. !!!!||| rPheArgGlnMetValValProValSerArgPheIleValAspValArgTyrSerPro 213339 : ATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCT : 213395 196 : IleTyrAspLeuValPhePheAlaHisCysLeuCysGlyPheValMetTyrSerValT : 215 :!: !!!!::!! !!|||!!. !!!. !:!!..!||| ! :!!!!::!!:!!:!!. ValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleA 213396 : GTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTG : 213455 216 : hrCysGlyValCysSerIleAlaIleLeuCysIleMetHisIleCysSerGlnCysSe : 234 !! ! !!.!||||||:!:||| !:!!! ! :!:||| !|||.!!||| .! laValValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGl 213456 : CGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGG : 213512 235 : rIleThrSerAlaThrLeuArgSerLeu : 243 !||| !! !::! !|||..! !||| yIleLeuMetSerTrpLeuGluHisLeu 213513 : CATTTTGATGAGCTGGCTGGAACATTTG : 213541 vulgar: NvOr10 24 243 . KQ414889.1 212875 213541 + 287 M 22 66 G 0 3 M 127 381 G 0 6 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212876 213541 287 + . gene_id 13 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212876 213541 . + . KQ414889.1 exonerate:protein2genome:local exon 212876 213541 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212876 213541 287 + . alignment_id 13 ; Query NvOr10 ; Align 212876 25 66 ; Align 212945 47 381 ; Align 213332 174 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 273 Query range: 22 -> 301 Target range: 262846 -> 263785 23 : GluTyrAlaValGlnIleThrArgTrpLeuLeuGlnProLeuGlyIleTrpProMetL : 42 !!:|||::!:!!||||||!.!||||||||||||:!!|||:!!||| !||||||:!!. AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 43 : ysSerSer<->ThrPhePheSerSerIleLeuArgSerLeuSerIleAlaThrCysTh : 60 ..:!!||| :!! .!...! !!|||:!! !!! !|||! !|||!.!..!||| erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 61 : rPheLeuLeuGlyPheLeuLeuValProCysCysLeuHisMetPheLeuIleGluLys : 79 !! !|||:!! !! ! !:!!:!!|||! ! ||||||!!: !!||| !! :!! rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 80 : AspLeuGlyValArgLeuLysMetIleGlyProLeuSerPheCysLeuMetAsnIleP : 99 :!!!!! !:!!!:!|||:!!:!::!!|||||||||.!! !! !!!:!:..!!!:. AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 100 : heLysTyrTyrAlaValLeuIleLysAspGlyGlnIleSerSerCysIleValAspMe : 118 !!!!.||| ! !:!!|||:!! ! ..! !.!.|||..!.!!|||:!: ! !!:! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 119 : tAlaGlyAspTrpHisArgLeuGluGlySerGluGlnArgGlyTyrMetLeuGluAsn : 137 ! !! !|||||| !! !:!! !!! !|||.!.!:! !! !||||||:!!||| lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 138 : AlaLysThrAlaArgValPheThrThrIleCysAlaLeuPheMetTyrGlyGlyGlyL : 157 |||||| !!.!||| ! ! .!!.!! !||||||:!!|||||| ! !.!! !: AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 158 : euProTyrSerThrIleLeuProLeuThrArgAspAlaIleIleValGlyAsnAspSe : 176 !! ! ! !!! !:!! ! !!!!!|||! !.!.!.!||| ! !||||||!!:!! etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 177 : r<-><->TyrArgHisLeuAlaTyrProSerTyrPheIlePhePheAsnProHisIle : 193 ! ||| ||| !!! !||| !||| .!!.!! ! !!! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 194 : ArgProIleTyrAspLeuValPhePheAlaHisCysLeuCysGlyPheValMetTyrS : 213 !.!|||! !!!!::!! !!.!! !.!!!!.! !|||! ||||||:!!:!: !: AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 214 : erValThrCysGlyValCysSerIleAlaIleLeuCysIleMetHisIleCysSerGl : 232 !!..!||| !|||!.!! !.!!!!:.!! :!!! ! ! ||| !|||.!!|| laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 233 : nCysSerIleThrSerAlaThrLeuArgSerLeuThrSerAspValAspGluLysThr : 251 |! !:!:!: !! !:!! !:!!! !..!!!!..!!:!.!. ! !!::!!!.! nLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsn 263484 : GTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAAT : 263540 252 : PheGlyLysIleValThrGlnHisLeu >>>> Target Intron 1 >>>> Ar : 261 ..! ! !!|||:!! ! 93 bp ! LysAsnLeuTyrPheThrGluIleGly++ +-Th 263541 : AAGAATCTTTATTTTACCGAGATAGGCgt.........................atAC : 263663 262 : gSerLeuLysPheAlaSerLysLeuGluLysIleLeuAsnAspMetCysLeuValGlu : 280 !..!! !!..||| !..!::::!!:!!!!.:!::!!!:! !!:|||!!!|||||| rAspCysSerPheIleAspArgIleLysAsnValMetSerThrIleCysPheValGlu 263664 : CGATTGTAGTTTCATAGATCGTATTAAGAATGTGATGAGTACGATATGTTTCGTGGAG : 263720 281 : LeuIleGlyCysThrPheAsnIleCysMetLeuGlyTyrTyrPheIleThrGluPheG : 300 |||.!! !..!|||.!.:!!|||||||||||||||||||||.!.:!!|||! !! | LeuPheLysAlaThrLeuAspIleCysMetLeuGlyTyrTyrIleLeuThrVal***G 263721 : TTATTCAAGGCTACGCTGGATATATGCATGCTAGGTTACTACATACTTACGGTATGAG : 263780 301 : luGln : 301 ||:!! luGlu 263781 : AAGAA : 263785 vulgar: NvOr10 22 301 . KQ414889.1 262846 263785 + 273 M 22 66 G 0 3 M 132 396 G 0 6 M 84 252 5 0 2 I 0 89 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 263785 273 + . gene_id 14 ; sequence NvOr10 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262847 263569 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263569 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263570 263571 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263570 263662 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263661 263662 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 263663 263785 . + . KQ414889.1 exonerate:protein2genome:local exon 263663 263785 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262847 263785 273 + . alignment_id 14 ; Query NvOr10 ; Align 262847 23 66 ; Align 262916 45 396 ; Align 263318 177 252 ; Align 263663 261 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 270 Query range: 2 -> 243 Target range: 226864 -> 227599 3 : LysGlnAsnLeuIleSerAsnLeuIleGluLeuLysSerIleArgAsnAlaGlnAspP : 22 |||:!!.!.! ! :!!|||||| ...||| !!!! !.!:!! !|||!!:! LysLysGlnArgSerAlaAsnLeuAlaSerLeuAlaThrGluAsnAspTyrGlnGluT 226865 : AAAAAACAGCGATCGGCGAACCTCGCGTCTCTCGCGACAGAGAACGACTATCAGGAAT : 226922 23 : he<->GluTyrAlaValGlnIleThrArgTrpLeuLeuGlnProLeuGlyIleTrpPr : 40 :! .!. ::!:!!|||:!:!.!||||||||||||:!!||||||||||||||||| yrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpPr 226923 : ACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCC : 226979 41 : o<->MetLysSerSerThrPhePheSerSerIleLeuArgSerLeuSerIleAlaThr : 58 | !:::!.!|||:!! .!..!!!!! !!!! !!!!|||! ! ! ! ! oSerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeu 226980 : GTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTC : 227036 59 : CysThrPheLeuLeuGlyPheLeuLeuValProCysCysLeuHisMetPheLeuIleG : 78 ||| ! |||:!!.!!||| !|||||| !! !! !!|||:!!:!! !!||| ! CysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluV 227037 : TGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGG : 227096 79 : luLysAspLeuGlyValArgLeuLysMetIleGlyProLeuSerPheCysLeuMetAs : 97 !|||! ! ! ! !! !||||||||||||||||||:!!||||||! ! !|||:: alLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSe 227097 : TGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTC : 227153 98 : nIlePheLysTyrTyrAlaValLeuIleLysAspGlyGlnIleSerSerCysIleVal : 116 !:!!.!!||||||! ! !:!! !.!! ! !!:! !.!.||| !..!|||:!!! ! rLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGlu 227154 : CCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAA : 227210 117 : AspMetAlaGlyAspTrpHisArgLeuGluGlySerGluGlnArgGlyTyrMetLeuG : 136 !!: ! !!|||||| ! !.!:!!..! ! !|||.!.|||..! |||:!! ArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValT 227211 : CGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGA : 227270 137 : luAsnAlaLysThrAlaArgValPheThrThrIleCysAlaLeuPheMetTyrGlyGl : 155 ! !!||| ! !!.!||| !!!.! !|||||||||.!!!!!|||:!:!:!..... hrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSe 227271 : CGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtag : 227327 156 : yGlyLeuProTyrSerThrIleLeuProLeuThrArgAspAlaIleIleVal<-><-> : 173 . ::: ::: ! !:!!:!!|||:!!!.! !! ::!:!! !..! rPheValPhePheTyrIleValValProIleAsnAlaGlySerValAlaThrGluAsp 227328 : tttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGAC : 227384 174 : GlyAsnAspSerTyrArgHisLeuAlaTyrProSerTyrPheIlePhePheAsnProH : 192 |||||| !!||||||! !!!.:!! !!!:!|||! ! |||.!! !:!! !! GlyAsnHisSerTyrIleGlnMetProPheProPheProLysIleIleAlaAspValA 227385 : GGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTC : 227444 193 : isIleArgProIleTyrAspLeuValPhePheAlaHisCysLeuCysGlyPheValMe : 211 .! !!!!|||.!! !!!!::!! !!|||! !.!!!.! !:!! |||.!!|||:! rgTyrSerProPheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLe 227445 : GTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTT : 227501 212 : tTyrSerValThrCysGlyValCysSerIleAlaIleLeuCysIleMetHisIleCys : 230 !:!!.!!||||||! !.!!.!||||||!!:||| !||| ! :!:||| !||| uHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCys 227502 : GCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGC : 227558 231 : SerGlnCysSerIleThrSerAlaThrLeuArgSerLeu : 243 .!!||| ..!:!: ! !:!! !||| !! !||| GlyGlnMetGluValLeuValSerTrpLeuGlyHisLeu 227559 : GGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTG : 227599 vulgar: NvOr10 2 243 . KQ414889.1 226864 227599 + 270 M 20 60 G 0 3 M 18 54 G 0 3 M 132 396 G 0 6 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226865 227599 270 + . gene_id 15 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226865 227599 . + . KQ414889.1 exonerate:protein2genome:local exon 226865 227599 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226865 227599 270 + . alignment_id 15 ; Query NvOr10 ; Align 226865 3 60 ; Align 226928 23 54 ; Align 226985 41 396 ; Align 227387 173 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 269 Query range: 22 -> 235 Target range: 274380 -> 275028 23 : GluTyrAlaValGlnIleThrArgTrpLeuLeuGlnProLeuGlyIleTrpProMetL : 42 !!:|||::!:!!|||:!:!.!||||||!!!|||:!!|||:!!||| ||||||:!: AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuA 274381 : GACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAG : 274438 43 : ysSer<->SerThrPhePheSerSerIleLeuArgSerLeuSerIleAlaThrCysTh : 60 ||| !!!||| |||..! !!|||||| ! !||| ||| ||| laSerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTy 274439 : CCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctA : 274495 61 : rPheLeuLeuGlyPheLeuLeuValProCysCysLeuHisMetPheLeuIleGluLys : 79 !! !!!!:!! !! ! !:!!:!!||| !! !!!|||!!:.!.|||:!!!!::!! rCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGlu 274496 : CTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAA : 274552 80 : AspLeuGlyValArgLeuLysMetIleGlyProLeuSerPheCysLeuMetAsnIleP : 99 ..!||| !:!!!:!||||||:!!:!!|||||||||.!! !!! !!!!!:... !. SerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyI 274553 : AGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAA : 274612 100 : heLysTyrTyrAlaValLeuIleLysAspGlyGlnIleSerSerCysIleValAspMe : 118 !!!!.||| !.!!:!!|||:!!:::..! !:!!||| !!.!!|||:!:! ! !!|| leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 274613 : TTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACAT : 274669 119 : tAlaGlyAspTrpHisArgLeuGluGlySerGluGlnArgGlyTyrMetLeuGluAsn : 137 | ! !||||||...! !:!! !! !!|||.!.!:! ! ||||||:!!||| tGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsn 274670 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAAC : 274726 138 : AlaLysThrAlaArgValPheThrThrIleCysAlaLeuPheMetTyrGlyGlyGlyL : 157 ||||||! !!.!||| ! !!.!!! !.!!|||||| !|||||| ! !!|||! !| AlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 274727 : GCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTC : 274786 158 : euProTyrSerThrIleLeuProLeuThrArgAspAlaIleIleValGlyAsnAsp<- : 176 || !|||!!!..!||| ! !!!!!|||! !.!..!!:!! !|||||||||!!: euCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluTh 274787 : TCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGAC : 274843 177 : ><->SerTyrArgHisLeuAlaTyrProSerTyrPheIlePhePheAsnProHisIle : 193 !!! !.! ||| !!! ! !:!!||| ! .!! !! ! !!! rArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThr 274844 : CAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACG : 274900 194 : ArgProIleTyrAspLeuValPhePheAlaHisCysLeuCysGlyPheValMetTyrS : 213 !!!|||! !!!!::!!|||.!! !:!!!!.! !:!!! ||||||:!!:!! !!| SerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnS 274901 : AGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATT : 274960 214 : erValThrCysGlyValCysSerIleAlaIleLeuCysIleMetHisIleCysSerGl : 232 || !.!! !|||!.!! !|||:!!||| !:!!! ! ||| !! !.!!|| erSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGl 274961 : CGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCA : 275017 233 : nCysSerIle : 235 |! |||:!: nLeuSerVal 275018 : GTTGAGCGTG : 275028 vulgar: NvOr10 22 235 . KQ414889.1 274380 275028 + 269 M 21 63 G 0 3 M 132 396 G 0 6 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274381 275028 269 + . gene_id 16 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274381 275028 . + . KQ414889.1 exonerate:protein2genome:local exon 274381 275028 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274381 275028 269 + . alignment_id 16 ; Query NvOr10 ; Align 274381 23 63 ; Align 274447 44 396 ; Align 274849 176 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 246 Query range: 275 -> 402 Target range: 301620 -> 302163 276 : MetCysLeuValGluLeuIleGlyCysThrPheAsnIleCysMetLeuGlyTyrTyrP : 295 :!:||| ||| ... |||!!.||| ! .!.||| !! !! LeuCysAlaValIleLysPheGluSerThrLeuAsnAlaLysPheLeuArgValIle* 301621 : CTCTGCgctgtaattaaatttgaatctACTTTAAATGCAAAGTTTTTACGAGTAATTT : 301678 296 : heIleThrGluPheGluGlnSerGluThrValGlyThrIleThrTyrSerLeuLeuLe : 314 .!! !|||!:::!!.!.|||!!:|||:!!!.!! !:!:|||!:!! ! !||||| **Phe***GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLe 301679 : GATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTT : 301735 315 : uIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyAspLeuLeuThrGlu : 333 |! |||!!!|||||||||||||||||||||||||||||||||!!::!!|||:!!||| uThrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGlu 301736 : AACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAA : 301792 334 : Gln >>>> Target Intron 1 >>>> CysGluAsnIleGlyGluValAlaTy : 343 ||| 80 bp |||....!.||||||..!!.!:!!|| Gln++ ++CysSerGlnIleGlySerAlaSerTy 301793 : CAGgt.........................agTGTAGCCAAATTGGTTCAGCATCGTA : 301902 344 : rMetIleAsnTrpTyrGlnPheSerGlyLysAspAlaArgAsnIleIleLeuIleVal : 362 | !|||:!!||||||.!.!!. !!!.!||| ||| !:!!:!!||||||:!! ! rGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSer 301903 : CGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGC : 301959 363 : AlaSerThrGlnArgProValValLeuThrAlaGlyLysMetValThrLeuSerIleA : 382 !.!! !:!!||| !||| ! !|||||||||||||||!!::!! !||||||:!:! ValIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuA 301960 : GTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGA : 302019 383 : rgSerPheCysAsn >>>> Target Intron 2 >>>> ValIleLysAlaSer : 391 .!!!!||| !!::! 82 bp |||:!:|||.!!||| snThrPheSerSer++ ++ValValLysThrSer 302020 : ATACATTCAGCTCTgt.........................agGTGGTGAAAACATCG : 302128 392 : ValThrTyrLeuAsnMetLeuArgThrLeuThr : 402 |||..!|||||||||:!:|||||||||:!!||| ValValTyrLeuAsnLeuLeuArgThrValThr 302129 : GTGGTGTACTTGAATTTACTGCGAACAGTTACA : 302163 vulgar: NvOr10 275 402 . KQ414889.1 301620 302163 + 246 M 59 177 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301621 302163 246 + . gene_id 17 ; sequence NvOr10 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301621 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301621 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302163 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302163 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301621 302163 246 + . alignment_id 17 ; Query NvOr10 ; Align 301621 276 177 ; Align 301878 335 156 ; Align 302116 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 234 Query range: 17 -> 200 Target range: 294669 -> 295227 18 : AsnAlaGlnAspPheGluTyrAlaValGlnIleThrArgTrpLeuLeuGlnProLeuG : 37 ||| !.!.||| ! ! ! !!::!:!!:!! ! !||| !!||||||:!!|||:!!| AsnArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleG 294670 : AACAGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCG : 294727 38 : lyIleTrpProMet<-><->LysSerSerThrPhePheSerSerIleLeuArgSerLe : 54 ||:!!||||||:!: !.. !!!!!:! .!.!:!!.!:!!||| !! !:! lyLeuTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIl 294728 : GTCTTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAAT : 294784 55 : uSerIleAlaThrCysThrPheLeuLeuGlyPheLeuLeuValProCysCysLeuHis : 73 ! !|||||| !||||||!!. !:!! !|||:!!|||||||||||| ! ! ! ! eLeuIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPhe 294785 : TCTGATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTC : 294841 74 : MetPheLeuIleGluLysAspLeuGlyValArgLeuLysMetIleGlyProLeuSerP : 93 ! !!! !! |||:::::: :::::!:!!|||:!::!:||||||:!! !! CysValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuT 294842 : TGTGTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTAT : 294901 94 : heCysLeuMetAsnIlePheLysTyrTyrAlaValLeuIleLysAspGlyGlnIleSe : 112 :!! !:!!:!:::!!!:.!!!:!||| !..!:!!:!!:!:||| ! !.!!!. yrSerMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLy 294902 : ACTCTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAA : 294958 113 : rSerCysIleValAspMetAlaGlyAspTrpHisArgLeuGluGlySerGluGlnArg : 131 ! !||||||! !|||!!:! !..!|||||| ! !:!!!!:..! !!|||!!.||| sHisCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArg 294959 : GCATTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGA : 295015 132 : GlyTyrMetLeuGluAsnAlaLysThrAlaArgValPheThrThrIleCysAlaLeuP : 151 !.! !|||:!!:!!||||||! !..!.!!!:! !.!.|||..! !! !.!!:!!. AlaIleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleI 295016 : GCGATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTA : 295075 152 : heMetTyrGlyGlyGlyLeuProTyrSerThrIleLeuProLeuThrArgAspAlaIl : 170 !.!!:|||.!!..!!.!:!! !!||| !.!!|||:::|||... :::|||:! leIleTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLe 295076 : TAATCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTT : 295132 171 : e<->IleValGlyAsnAspSerTyrArgHisLeuAlaTyrProSerTyrPheIlePhe : 188 : ! ! ! !|||:!!!!! !||| ||| !! !|||.!!||| :!!||| uGluAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPhe 295133 : GGAGAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTC : 295189 189 : PheAsnProHisIleArgProIleTyrAspLeuVal : 200 ! :!! !!:!! !!!!|||! !|||!!::!!:!! ValAspAlaTyrSerSerProThrTyrGluIleIle 295190 : GTAGACGCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: NvOr10 17 200 . KQ414889.1 294669 295227 + 234 M 24 72 G 0 6 M 129 387 G 0 3 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294670 295227 234 + . gene_id 18 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294670 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294670 295227 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294670 295227 234 + . alignment_id 18 ; Query NvOr10 ; Align 294670 18 72 ; Align 294748 42 387 ; Align 295138 171 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 233 Query range: 294 -> 402 Target range: 272827 -> 273302 295 : PheIleThrGluPheGluGlnSerGluThrValGlyThrIleThrTyrSerLeuLeuL : 314 |||... |||!:: .!. !!!: ! !.!! !! !||||||! !:!!:!!| PhePhe***GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleL 272828 : tttttctaggAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATAC : 272885 315 : euIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyAspLeuLeuThrGl : 333 ||||||||:!:|||||||||||||||||| ||||||||||||!!::!!|||||||| euIleSerMetThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGl 272886 : TTATATCCATgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGA : 272942 334 : uGln >>>> Target Intron 1 >>>> CysGluAsnIleGlyGluValAlaT : 343 |::! 70 bp |||:::...||||||||||||!.!| uArg++ ++CysLysLysIleGlyGluValValT 272943 : GAGGgt.........................agtgtaaaaaaattggcGAGGTAGTTT : 273042 344 : yrMetIleAsnTrpTyrGlnPheSerGlyLysAspAlaArgAsnIleIleLeuIleVa : 362 |||||! ||||||||| ! !!. !!||||||||| !! !:!!:!:|||||||||:! yrMetThrAsnTrpTyrTyrLeuProGlyLysAspIleLeuAspLeuIleLeuIleIl 273043 : ACATGACGAACTGGTACTATTTACCCGGCAAAGATATCCTCGATCTGATTTTGATCAT : 273099 363 : lAlaSerThrGlnArgProValValLeuThrAlaGlyLysMetValThrLeuSerIle : 381 !:!!!!! !... ! !:!! !:!!|||||||||!:!!!:||| !!:!!|||:!: eSerArgCysSerValValIleLysIleThrAlaGlyArgIleValProMetSerVal 273100 : CTCAAGATGCAGTGTTGTGATTAAAATCACCGCTGGCAGGATAGTTCCCATGTCTGTG : 273156 382 : ArgSerPheCysAsn >>>> Target Intron 2 >>>> ValIleLysAlaSe : 391 !!!!||| !!:!! 81 bp |||!!:|||::!:! TyrThrPheGlyAsp++ ++ValMetLysSerAl 273157 : TACACGTTCGGCGATgt.........................aggtGATGAAAAGTGC : 273267 392 : rValThrTyrLeuAsnMetLeuArgThrLeuThr : 402 ! !!.!!|||||||||||||||||| ! !||| aPheAlaTyrLeuAsnMetLeuArgGlnThrThr 273268 : GTTCGCGTACTTAAATATGCTACGACAAACGACA : 273302 vulgar: NvOr10 294 402 . KQ414889.1 272827 273302 + 233 M 40 120 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272828 273302 233 + . gene_id 19 ; sequence NvOr10 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272828 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272828 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272828 273302 233 + . alignment_id 19 ; Query NvOr10 ; Align 272828 295 120 ; Align 273018 335 156 ; Align 273255 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 220 Query range: 289 -> 387 Target range: 305076 -> 305783 290 : MetLeuGlyTyrTyrPheIleThrGluPheGluGlnSerGluThrValGlyThrIleT : 309 .!.||| |||... !!!:!::|||...|||.!.||||||.!! !! !| PheLeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrT 305077 : TTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAA : 305134 310 : hrTyrSerLeuLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl : 328 |||||!!!:!!||||||||||||:!!||||||||||||||||||!!.||||||||||| hrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGl 305135 : CATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGG : 305191 329 : yAspLeuLeuThrGluGln >>>> Target Intron 1 >>>> CysGluAsnI : 338 |!!::!!|||! !|||:!! 413 bp !!...!:!: yGluIleLeuMetGluLys++ ++SerSerSerV 305192 : TGAGATTCTTATGGAAAAGgt.........................agAGCAGTAGCG : 305634 339 : leGlyGluValAlaTyrMetIleAsnTrpTyrGlnPheSerGlyLysAspAlaArgAs : 357 !!||| ! !..!!:!||||||!:!||||||!!.!!. !! !||| !!.!.. alGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHisGl 305635 : TTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACATGG : 305691 358 : nIleIleLeuIleValAlaSerThrGlnArgProValValLeuThrAlaGlyLysMet : 376 !:!!|||||||||:!!|||! !:!!...!.!|||!.! !:!!!:!|||||||||:!: yLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLysVal 305692 : TCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAAGTA : 305748 377 : ValThrLeuSerIleArgSerPheCysAsnVal : 387 ||| !||||||:!! !!!!||| ! |||||| ValAspLeuSerLeuSerThrPheGlyAsnVal 305749 : GTTGATTTATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: NvOr10 289 387 . KQ414889.1 305076 305783 + 220 M 45 135 5 0 2 I 0 409 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305077 305783 220 + . gene_id 20 ; sequence NvOr10 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305077 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305077 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305077 305783 220 + . alignment_id 20 ; Query NvOr10 ; Align 305077 290 135 ; Align 305625 335 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 197 Query range: 260 -> 337 Target range: 224128 -> 224443 261 : ArgSerLeuLysPheAlaSerLysLeuGluLysIleLeuAsnAspMetCysLeuValG : 280 !:!!!!! !!:!||| !!!! ! !|||||| !|||.!..!.:!:! !!!|||| LysCysCysArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValG 224129 : AAATGTTGCAGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGG : 224186 281 : luLeuIleGlyCysThrPheAsnIleCysMetLeuGlyTyrTyrPheIleThr >>> : 298 ||!!!:!!||||||! !!!.|||||||||:!:|||||||||||| !!|||..! luPheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleVal++ 224187 : AATTTCTAGGCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTGgt... : 224242 299 : > Target Intron 1 >>>> GluPheGluGlnSerGluThrValGlyThrIleT : 309 84 bp |||:::......|||.!. !..!.!!.!!:!:| ++GluTrpSerSerSerHisLeuThrSerAlaValT 224243 : ......................aggagtggagttcgagtcATTTAACTAGCGCGGTGA : 224357 310 : hrTyrSerLeuLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl : 328 |||||! !:!!||||||!!:|||||||||||||||||||||||||||||||||||||| hrTyrPheIleLeuLeuMetSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 224358 : CTTACTTCATACTACTCATGTCtcttactttcaatatttttatattttgttacatAGG : 224414 329 : yAspLeuLeuThrGluGlnCysGluAsn : 337 |!!:|||:!!.!!|||||| :::||| yGluLeuValAlaGluGlnValLysAsn 224415 : AGAGCTGGTAGCTGAAcaggtgaaaaat : 224443 vulgar: NvOr10 260 337 . KQ414889.1 224128 224443 + 197 M 37 111 5 0 2 I 0 80 3 0 2 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224129 224443 197 + . gene_id 21 ; sequence NvOr10 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224129 224239 . + . KQ414889.1 exonerate:protein2genome:local exon 224129 224239 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224240 224241 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224240 224323 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224322 224323 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224324 224443 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224443 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224129 224443 197 + . alignment_id 21 ; Query NvOr10 ; Align 224129 261 111 ; Align 224324 298 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 194 Query range: 262 -> 334 Target range: 210492 -> 210774 263 : LeuLysPheAlaSerLysLeuGluLysIleLeuAsnAspMetCysLeuValGluLeuI : 282 !!!!..||| !:!! ! !|||!!.:!!|||:!!!!:!!:! |||:!!|||:!!: PheSerPheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGluMetV 210493 : TTCAGTTTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAATGG : 210550 283 : leGlyCysThrPheAsnIleCysMetLeuGlyTyrTyrPheIleThr >>>> Targ : 298 !:|||||||||.!.|||!!:|||.!.|||||||||||| !!:! ! alGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210551 : TGGGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt......... : 210600 299 : et Intron 1 >>>> GluPheGluGlnSerGluThrValGlyThrIleThrTyrS : 311 66 bp |||!::!!:...!.!!!: !!:!!.!!!:!:!:||||||! ++GluTrpAspSerLysAspProIleSerSerLeuThrTyrI 210601 : ................agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACA : 210703 312 : erLeuLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyAspLe : 330 !:!!||||||! !|||:!!|||||||||||||||||||||||||||||||||!!::! leValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluVa 210704 : TAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGT : 210760 331 : uLeuThrGluGln : 334 !|||.!!|||||| lLeuAlaGluGln 210761 : GTTGGCTGAACAg : 210774 vulgar: NvOr10 262 334 . KQ414889.1 210492 210774 + 194 M 35 105 5 0 2 I 0 62 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210493 210774 194 + . gene_id 22 ; sequence NvOr10 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 210493 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210493 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210493 210774 194 + . alignment_id 22 ; Query NvOr10 ; Align 210493 263 105 ; Align 210664 298 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 176 Query range: 261 -> 334 Target range: 234515 -> 234914 262 : SerLeuLysPheAlaSerLysLeuGluLysIleLeuAsnAspMetCysLeuValGluL : 281 !!!!!!!..||| ! !!!!.:!!|||!!.:!!:!!||| !!:||||||||||||| ThrPheSerPheIleArgAsnIleGluAsnValMetAsnLeuIleCysLeuValGluL 234516 : ACTTTCAGTTTTATACGGAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGT : 234573 282 : euIleGlyCysThrPheAsnIleCysMetLeuGlyTyrTyrPheIleThr >>>> T : 298 ||:!!|||||||||!!.|||!!:|||||||||! !||||||!!.:!!||| euValGlyCysThrLeuAsnMetCysMetLeuGluTyrTyrLeuLeuThr++ 234574 : TGGTAGGATGCACGTTGAACATGTGCATGCTCGAGTATTATTTACTCACGgt...... : 234626 299 : arget Intron 1 >>>> GluPheGluGlnSerGluThrValGlyThrIleThrT : 310 189 bp ||| ...:::...::: ..! :!!| ++GluLysSerLysGluLysLeuAla---------SerT 234627 : ...................agGAAAAgtcgaaggaaaaattagCT---------TCAT : 234840 311 : yrSerLeuLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyAs : 329 || !:!!:!!! !:!:|||:!!|||||||||||||||||||||||||||||||||!! yrValIleValTyrValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGl 234841 : ACGTCATCGTGTACGTGTCCATGACATTtaatatattcatattttgttACATCGGAGA : 234897 330 : pLeuLeuThrGluGln : 334 : !|||||||||||| uThrLeuThrGluGln 234898 : GACGCTTACAGAGCAG : 234914 vulgar: NvOr10 261 334 . KQ414889.1 234515 234914 + 176 M 36 108 5 0 2 I 0 185 3 0 2 M 8 24 G 3 0 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234516 234914 176 + . gene_id 23 ; sequence NvOr10 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234516 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234516 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 234516 234914 176 + . alignment_id 23 ; Query NvOr10 ; Align 234516 262 108 ; Align 234813 298 24 ; Align 234837 309 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 173 -> 253 Target range: 300189 -> 300429 174 : AsnAspSerTyrArgHisLeuAlaTyrProSerTyrPheIlePhePheAsnProHisI : 193 ||| !!!!!|||!:!! ||||||||||||.!!||| ! |||.!!:!! !!!!.! AsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnT 300190 : AATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAA : 300247 194 : leArgProIleTyrAspLeuValPhePheAlaHisCysLeuCysGlyPheValMetTy : 212 !!!!|||! !|||!!::::||||||||| ||||||.!!...!.!.!.:!!||||| hrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTy 300248 : CCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTA : 300304 213 : rSerValThrCysGlyValCysSerIleAlaIleLeuCysIleMetHisIleCysSer : 231 |!:!|||||| !.!!.!! !|||:!:||| :!!! !:!!! |||||||||.!! rAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGly 300305 : CAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGA : 300361 232 : GlnCysSerIleThrSerAlaThrLeuArgSerLeuThrSerAspValAspGluLysT : 251 ||| !..!||| !! !|||! !|||..!..!|||..!..! ..!! |||||| GlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrGlyGluLysA 300362 : CAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGGGAGAGAAGG : 300421 252 : hrPheGly : 253 ! !||| spAspGly 300422 : ACGACGGT : 300429 vulgar: NvOr10 173 253 . KQ414889.1 300189 300429 + 166 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300190 300429 166 + . gene_id 24 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 300190 300429 . + . KQ414889.1 exonerate:protein2genome:local exon 300190 300429 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300190 300429 166 + . alignment_id 24 ; Query NvOr10 ; Align 300190 174 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 11 -> 121 Target range: 299653 -> 299989 12 : GluLeuLysSerIleArgAsnAlaGlnAspPheGluTyrAlaValGlnIleThrArgT : 31 :!!|||!:!!:! !!.! !! !.!.|||.!..!.|||.!!:!!|||!!: !!:!| GlnLeuArgAsnTyrHisTyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnT 299654 : CAATTGAGGAATTACCATTACCAAAATGACATACATTACACGCTGCAAATGTGCCAAT : 299711 32 : rpLeuLeuGlnProLeuGlyIleTrpProMet<-><->LysSerSerThrPhePheSe : 48 ||||||||:!!|||:!!|||:!!|||! !:!! :!! !!|||!:! .!... rpLeuLeuLysProIleGlyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGl 299712 : GGTTGTTGAAACCTATCGGAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGA : 299768 49 : rSerIleLeuArgSerLeuSerIleAlaThrCysThrPheLeuLeuGlyPheLeuLeu : 67 ! !:!!:!! !! !:!! !!!:.!!! !||| !! ! !||| !|||:!!:!! uHisLeuValSerIleValLeuMetThrIleCysPheSerSerLeuPhePheIleVal 299769 : ACACCTCGTCTCGATCGTTCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTC : 299825 68 : ValProCysCysLeuHisMetPheLeuIleGluLysAspLeuGlyValArgLeuLysM : 87 :!!|||! ! !!! !:!!!!:|||!!! ||||||..!:!! !|||!:!:!!|||: LeuProSerGlyHisTyrIlePhePheAlaGluLysSerIleHisValLysValLysV 299826 : TTGCCATCCGGTCATTACATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAG : 299885 88 : etIleGlyProLeuSerPheCysLeuMetAsnIlePheLysTyrTyrAlaValLeuIl : 106 !:.!!||||||:!!.!!||||||||| ::!||| !!||||||! ! !:!!! !:! alPheGlyProValGlyPheCysLeuSerSerIleValLysTyrCysTyrLeuCysLe 299886 : TATTCGGTCCGGTTGGTTTTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCT : 299942 107 : eLysAspGlyGlnIleSerSerCysIleValAspMetAlaGlyAsp : 121 :!!.! !||| !.!!..! !!|||||| ! !!:!:! ! !!||| uAsnGlyGlyAlaPheGluArgCysIleGlnHisValGluArgAsp 299943 : GAACGGTGGCGCGTTCGAACGATGCATCCAACACGTCGAGAGAGAC : 299989 vulgar: NvOr10 11 121 . KQ414889.1 299653 299989 + 156 M 30 90 G 0 6 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299654 299989 156 + . gene_id 25 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299654 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299654 299989 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299654 299989 156 + . alignment_id 25 ; Query NvOr10 ; Align 299654 12 90 ; Align 299750 42 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 333 -> 399 Target range: 264723 -> 265001 334 : GlnCysGluAsnIleGlyGluValAlaTyrMetIleAsnTrpTyrGlnPheSerGlyL : 353 ||||||:!!!!.:!!|||||||||!.!|||||| ||||||||| ! !!. !! !| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 354 : ysAspAlaArgAsnIleIleLeuIleValAlaSerThrGlnArgProValValLeuTh : 372 ||||| !! !:!!:!:|||||||||:!! !!!!:!!... ! ! !! !!!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 373 : rAlaGlyLysMetValThrLeuSerIleArgSerPheCysAsn >>>> Target I : 387 ||||||||||!!::!! !:!!|||!!: !!!!||| !!:!! 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 388 : ntron 1 >>>> ValIleLysAlaSerValThrTyrLeuAsnMetLeuArg : 399 bp |||||||||:!!||| !!||||||||||||:!:|||||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArg 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGC : 265001 vulgar: NvOr10 333 399 . KQ414889.1 264723 265001 + 148 M 53 159 5 0 2 I 0 76 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265001 148 + . gene_id 26 ; sequence NvOr10 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265001 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265001 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265001 148 + . alignment_id 26 ; Query NvOr10 ; Align 264724 334 159 ; Align 264963 387 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 297 -> 345 Target range: 219328 -> 219472 298 : GluPheGluGlnSerGluThrValGlyThrIleThrTyrSerLeuLeuLeuIleSerL : 317 |||!:::!!..!!:!!!:..!..!.!!.!!:!:||||||! !:!!||||||||||||| GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 318 : euThrPheAsnIlePheIlePheCysTyrIleGlyAspLeuLeuThrGluGlnCysGl : 336 |||||||||||||||||||||||||||||||||||!!::!!:!!.!!|||||| || euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGlnValGl 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAggtaga : 219443 337 : uAsnIleGlyGluValAlaTyrMetIle : 345 |...... ::::::||| :::||| uThrPhePheLysIleAlaLysIleIle 219444 : aacatttttcaaaattgcaaaaattatc : 219472 vulgar: NvOr10 297 345 . KQ414889.1 219328 219472 + 135 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219472 135 + . gene_id 27 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219329 219472 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219472 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219472 135 + . alignment_id 27 ; Query NvOr10 ; Align 219329 298 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 332 -> 387 Target range: 277548 -> 277713 333 : GluGlnCysGluAsnIleGlyGluValAlaTyrMetIleAsnTrpTyrGlnPheSerG : 352 ..!||||||:!!!!.:!!|||||||||!.!||||||! ||||||||| ! !!. !!! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 353 : lyLysAspAlaArgAsnIleIleLeuIleValAlaSerThrGlnArgProValValLe : 371 !|||||| !! !|||:!::!!||||||:!!:!!!!!:!!... ::: :: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 372 : uThrAlaGlyLysMetValThrLeuSerIleArgSerPheCysAsnVal : 387 :||||||||||||:::::: :::|||:!: !!!!||| !!:!!||| eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspVal 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTA : 277713 vulgar: NvOr10 332 387 . KQ414889.1 277548 277713 + 134 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277713 134 + . gene_id 28 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277549 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277713 134 + . alignment_id 28 ; Query NvOr10 ; Align 277549 333 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 329 -> 387 Target range: 214848 -> 215022 330 : LeuLeuThrGluGlnCysGluAsnIleGlyGluValAlaTyrMetIleAsnTrpTyrG : 349 :!!:!! !:!!||||||:!!!!.:!!|||||||||:!!|||||||||.!.||||||! IleMetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrA 214849 : ATTATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACC : 214906 350 : lnPheSerGlyLysAspAlaArgAsnIleIleLeuIleValAlaSerThrGlnArgPr : 368 :!!!. !!|||!!. ! !! ! ! !|||||||||:!!|||! !:!!.!. ! ! rgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSe 214907 : GATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATC : 214963 369 : oValValLeuThrAlaGlyLysMetValThrLeuSerIleArgSerPheCysAsnVal : 387 !||| !!!!|||||||||!!.|||||| !|||||||||!!!!!!||| !!!:!||| rValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214964 : CGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215020 vulgar: NvOr10 329 387 . KQ414889.1 214848 215022 + 133 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214849 215022 133 + . gene_id 29 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214849 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214849 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214849 215022 133 + . alignment_id 29 ; Query NvOr10 ; Align 214849 330 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 262 -> 318 Target range: 279906 -> 280074 263 : LeuLysPheAlaSerLysLeuGluLysIleLeuAsnAspMetCysLeuValGluLeuI : 282 !!!!..||| !|||:!!:!!||| !:!!||||||!!:!!:|||!!!||||||:!!| PheSerPheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValI 279907 : TTCAGTTTTATATCGCAAATCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTGA : 279964 283 : leGlyCysThrPheAsnIleCysMetLeuGlyTyrTyrPheIleThrGluPheGluGl : 301 |||||||||||!!.|||||||||.!.||| !||||||!!.:!!|||! ! ||| leGlyCysThrLeuAsnIleCysPheLeuThrTyrTyrLeuLeuThrValThrGluTh 279965 : TTGGTTGCACGTTGAACATATGCTTTTTGACATATTATTTACTCACGGTAACAGAGAC : 280021 302 : nSerGluThrValGlyThrIleThrTyrSerLeuLeuLeuIleSerLeuThr : 318 !!!! ! ..!:!!..!! !:!: !!::..! !|||! ! |||! !||| rThrTyrValIleSerIleLeu***TrpGlnLysLeuHisSerSerCysThr 280022 : GACTTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACT : 280074 vulgar: NvOr10 262 318 . KQ414889.1 279906 280074 + 121 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 279907 280074 121 + . gene_id 30 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 279907 280074 . + . KQ414889.1 exonerate:protein2genome:local exon 279907 280074 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 279907 280074 121 + . alignment_id 30 ; Query NvOr10 ; Align 279907 263 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 289 -> 334 Target range: 214605 -> 214740 290 : MetLeuGlyTyrTyrPheIleThrGluPheGluGlnSerGluThrValGlyThrIleT : 309 :::::: ::: ...::: |||!::.!...!!:!.!. !..! !|||:!!| IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 310 : hrTyrSerLeuLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl : 328 ||||| !:!!|||! !||||||||||||||||||||||||||||||||||||||||| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 329 : yAspLeuLeuThrGluGln : 334 |!!:|||:!!:!!|||||| yGluLeuValSerGluGln 214721 : CGAGCTTGTGTCTGAACAG : 214740 vulgar: NvOr10 289 334 . KQ414889.1 214605 214740 + 119 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 214740 119 + . gene_id 31 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 214740 119 + . alignment_id 31 ; Query NvOr10 ; Align 214606 290 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 292 -> 334 Target range: 291353 -> 291479 293 : TyrTyrPheIleThrGluPheGluGlnSerGluThrValGlyThrIleThrTyrSerL : 312 ::: !:!.!! !|||!::|||...|||!!::!!:!!|||! !:!!|||||| ! PheValTyrPhe***GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValT 291354 : tttgtaTACTTTTAGGAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCA : 291411 313 : euLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyAspLeuLe : 331 !||||||! !|||!!!||||||||||||.!.||||||||||||:!!|||!!:||||| hrLeuLeuThrSerPheThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLe 291412 : CTCTCCTCACTTCTTTCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCT : 291468 332 : uThrGluGln : 334 | !! !||| uLeuGlyGln 291469 : TCTTGGACAG : 291479 vulgar: NvOr10 292 334 . KQ414889.1 291353 291479 + 117 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291354 291479 117 + . gene_id 32 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 291354 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291354 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291354 291479 117 + . alignment_id 32 ; Query NvOr10 ; Align 291354 293 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 337 -> 387 Target range: 206251 -> 206401 338 : IleGlyGluValAlaTyrMetIleAsnTrpTyrGlnPheSerGlyLysAspAlaArgA : 357 :!:||| !..!:!!! !! !:!:|||||||||!::.!! !!..!!:! !!||||||: ValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgS 206252 : GTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCT : 206309 358 : snIleIleLeuIleValAlaSerThrGlnArgProValValLeuThrAlaGlyLysMe : 376 :!!!:|||||||||:!!|||! !:!!.!. !|||:!! !||||||||||||||||| erMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMe 206310 : CTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAAT : 206366 377 : tValThrLeuSerIleArgSerPheCysAsnVal : 387 | !! !:!!|||:!! !|||||| !:!!||| tPheGluMetSerLeuAlaSerPheThrAspVal 206367 : GTTCGAAATGTCTTTAGCTAGTTTCACCGATGTA : 206401 vulgar: NvOr10 337 387 . KQ414889.1 206251 206401 + 116 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206252 206401 116 + . gene_id 33 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206252 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206252 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206252 206401 116 + . alignment_id 33 ; Query NvOr10 ; Align 206252 338 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 333 -> 406 Target range: 292389 -> 292608 334 : GlnCysGluAsnIleGlyGluValAlaTyrMetIleAsnTrpTyrGlnPheSerGlyL : 353 ||| !!....!.|||!.!.!.!.!:!!||| ! !.!.||||||.!..!. !! !!: GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 354 : ysAspAlaArgAsnIleIleLeuIleValAlaSerThrGlnArgProValValLeuTh : 372 :! ! ||||||:!!|||:!!|||:!::!!|||! !|||:!!!.!|||:!! !||||| rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 373 : rAlaGlyLysMetValThrLeuSerIleArgSerPheCysAsnValIleLysAlaSer : 391 ||||||||||!!: !!..!||||||:!:!.!!!!||| !! !||| !:!!:!!!.! rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSerLys 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCAAAA : 292561 392 : ValThrTyrLeuAsnMetLeuArgThrLeuThrAlaSerGluSer : 406 :!!..!! :!!:!! !|||! !:!! ...|||:::::: LeuValLeuIleHis***GluArgIleValAspGlySerAspThr 292562 : CTAGTCTTGATACACTAAGAACGTATAGTTGAtggaagcgataca : 292608 vulgar: NvOr10 333 406 . KQ414889.1 292389 292608 + 113 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 292608 113 + . gene_id 34 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292390 292608 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292608 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 292608 113 + . alignment_id 34 ; Query NvOr10 ; Align 292390 334 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 297 -> 333 Target range: 228247 -> 228355 298 : GluPheGluGlnSerGluThrValGlyThrIleThrTyrSerLeuLeuLeuIleSerL : 317 |||!::.!.! !!.!||| !..! !.!!:!!||||||||| !||||||:!!|||! GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerP 228248 : GAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCT : 228305 318 : euThrPheAsnIlePheIlePheCysTyrIleGlyAspLeuLeuThrGlu : 333 !!|||||||||||||||||||||||||||||||||!!::!!:!!.!!||| heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGlu 228306 : TTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAA : 228355 vulgar: NvOr10 297 333 . KQ414889.1 228247 228355 + 111 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228248 228355 111 + . gene_id 35 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 228248 228355 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228355 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228248 228355 111 + . alignment_id 35 ; Query NvOr10 ; Align 228248 298 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 333 -> 387 Target range: 244655 -> 244817 334 : GlnCysGluAsnIleGlyGluValAlaTyrMetIleAsnTrpTyrGlnPheSerGlyL : 353 |||||| !!!.:!!|||||||||!.!||||||! !:!!|||||| ! .!. !! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 354 : ysAspAlaArgAsnIleIleLeuIleValAlaSerThrGlnArgProValValLeuTh : 372 :! !! !:!!:!!|||||||||:!! ! !!:!!.!.! ! !|||! !:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 373 : rAlaGlyLysMetValThrLeuSerIleArgSerPheCysAsnVal : 387 ||||||||||:!::!! !:!!|||:!! !!!!||| !!:!!||| rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspVal 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTA : 244817 vulgar: NvOr10 333 387 . KQ414889.1 244655 244817 + 105 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244817 105 + . gene_id 36 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244817 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244817 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244817 105 + . alignment_id 36 ; Query NvOr10 ; Align 244656 334 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 332 -> 387 Target range: 283273 -> 283438 333 : GluGlnCysGluAsnIleGlyGluValAlaTyrMetIleAsnTrpTyrGlnPheSerG : 352 ..!||||||:!!!!.:!!|||||||||!.!||||||! |||! !!:! ! !!. !!! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsn***PheTyrLeuProA 283274 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTAGTTTTATTTACCCG : 283331 353 : lyLysAspAlaArgAsnIleIleLeuIleValAlaSerThrGlnArgProValValLe : 371 !|||||| !! !|||:!::!!||||||:!!:!!!!!:!!... ::: :: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 283332 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 283388 372 : uThrAlaGlyLysMetValThrLeuSerIleArgSerPheCysAsnVal : 387 :||||||...|||:::::: ::!||| !!!!||| !:!!||| eThrAlaSerLysLeuIleGlnMetSerAlaTyrThrPheAspAspVal 283389 : taccgctagcaaattaattcaaatGTCCGCGTACACGTTCGACGATGTA : 283438 vulgar: NvOr10 332 387 . KQ414889.1 283273 283438 + 105 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 283274 283438 105 + . gene_id 37 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 283274 283438 . + . KQ414889.1 exonerate:protein2genome:local exon 283274 283438 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 283274 283438 105 + . alignment_id 37 ; Query NvOr10 ; Align 283274 333 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 333 -> 392 Target range: 238625 -> 238802 334 : GlnCysGluAsnIleGlyGluValAlaTyrMetIleAsnTrpTyrGlnPheSerGlyL : 353 |||||| !!!.:!!|||||||||!.!||||||! !:!!|||||| ! .!. !! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 354 : ysAspAlaArgAsnIleIleLeuIleValAlaSerThrGlnArgProValValLeuTh : 372 :! !! !:!!:!!|||||||||:!! ! !!:!!.!. ! !||| !:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 373 : rAlaGlyLysMetValThrLeuSerIleArgSerPheCysAsnValIleLysAlaSer : 391 ||||||||||:!::!! !:!!|||:!! !!!!||| !!:!!|||! !:!!.!!!:! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 392 : Val : 392 :!! Leu 238798 : CTT : 238802 vulgar: NvOr10 333 392 . KQ414889.1 238625 238802 + 103 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238802 103 + . gene_id 38 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238802 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238802 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238802 103 + . alignment_id 38 ; Query NvOr10 ; Align 238626 334 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 333 -> 392 Target range: 254271 -> 254448 334 : GlnCysGluAsnIleGlyGluValAlaTyrMetIleAsnTrpTyrGlnPheSerGlyL : 353 |||||| !!!.:!!|||||||||!.!||||||! !:!!|||||| ! .!. !! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 354 : ysAspAlaArgAsnIleIleLeuIleValAlaSerThrGlnArgProValValLeuTh : 372 :! !! !:!!:!!|||||||||:!!.!! !!:!!.!. ! !|||! !:!!|| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 373 : rAlaGlyLysMetValThrLeuSerIleArgSerPheCysAsnValIleLysAlaSer : 391 ||||||||||::: :::|||:!! !!!!||| !!:!!|||! !:!!.!!!:! rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 254443 392 : Val : 392 :!! Leu 254444 : CTT : 254448 vulgar: NvOr10 333 392 . KQ414889.1 254271 254448 + 103 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254448 103 + . gene_id 39 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254448 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254448 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254448 103 + . alignment_id 39 ; Query NvOr10 ; Align 254272 334 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 263 -> 297 Target range: 275207 -> 275309 264 : LysPheAlaSerLysLeuGluLysIleLeuAsnAspMetCysLeuValGluLeuIleG : 283 !..||| !:!!::::!!||| ! :!::!!||| !!:|||!!!:!!||||||.!! SerPheIleAlaArgIleGluAspValMetAsnArgIleCysPheMetGluLeuPheL 275208 : AGTTTCATAGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAATTGTTCA : 275265 284 : lyCysThrPheAsnIleCysMetLeuGlyTyrTyrPheIleThr : 297 !||||||.!.:!!!!:||||||||||||||||||.!!:!!||| ysCysThrLeuAspMetCysMetLeuGlyTyrTyrIleLeuThr 275266 : AGTGTACTCTGGATATGTGCATGCTTGGCTATTACATTCTCACG : 275309 vulgar: NvOr10 263 297 . KQ414889.1 275207 275309 + 102 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 275208 275309 102 + . gene_id 40 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 275208 275309 . + . KQ414889.1 exonerate:protein2genome:local exon 275208 275309 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 275208 275309 102 + . alignment_id 40 ; Query NvOr10 ; Align 275208 264 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 263 -> 296 Target range: 260779 -> 260878 264 : LysPheAlaSerLysLeuGluLysIleLeuAsnAspMetCysLeuValGluLeuIleG : 283 !..||| !|||::::!!||| ! :!::!!||| !!:|||!!!:!!||||||.!! SerPheIleSerArgIleGluAspValMetAsnArgIleCysPheLeuGluLeuPheA 260780 : AGCTTCATATCGCGTATCGAGGATGTGATGAACCGGATATGCTTCCTGGAGTTGTTCA : 260837 284 : lyCysThrPheAsnIleCysMetLeuGlyTyrTyrPheIle : 296 !!||||||.!.:!!||||||:!:||||||||||||.!!:!! rgCysThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeu 260838 : GGTGCACTCTGGATATATGTCTACTTGGCTACTATATTCTT : 260878 vulgar: NvOr10 263 296 . KQ414889.1 260779 260878 + 100 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 260780 260878 100 + . gene_id 41 ; sequence NvOr10 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 260780 260878 . + . KQ414889.1 exonerate:protein2genome:local exon 260780 260878 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 260780 260878 100 + . alignment_id 41 ; Query NvOr10 ; Align 260780 264 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 521 Query range: 11 -> 380 Target range: 284508 -> 287222 12 : AspArgGlyPheAsnTyrAlaValLysLeuThrArgLeuLeuMetIleSerCysGlyI : 31 |||! !! !!::! |||::!|||:!!:!!!.!|||! !!!!:!:! ! !! !|||: AspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyV 284509 : GACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCG : 284566 32 : leTrpProAlaLysPheSer<->ThrSerPheGlnLysCysLeuArgProIleLeuIl : 49 !!|||||| !!...!!!!! |||!!!!!.:!!||| ! ! ! !:!!||| alTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAl 284567 : TATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGC : 284623 50 : eIleIleCysPhePheIleMetPhePheGlnLeuIleProPheCysLeuPheMetPhe : 68 :!!||| !!! !|||:!:!!: !|||! |||:!!|||! !..!|||! !! ! aLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrVal 284624 : GTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTG : 284680 69 : Leu<->IleIleLysAspMetArgIleArgLeuLysLeuLeuGlyProLeuGlyPheS : 87 ||| ! !! ! |||:!: !! !:!:!!|||:!!:!!|||||||||.!!|||! LeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheC 284681 : CTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCT : 284740 88 : erLeuThrSerLeuPheLysTyrValValValValIleLysAsnArgGluIleAlaLy : 106 !!:!!! !:!! !.!!|||||| !:!!:!!:!! :::..! !!:!!|||!.!:! ysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGl 284741 : GCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCA : 284797 107 : sCysValGlnIleMetValAspAspTrpHis<-><-><->GlnLeuAsnSerThrGlu : 122 !||||||:!! !!!: !! |||||| ! ..!! !!::... ||| nCysValLysAspIleArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGlu 284798 : ATGCGTGAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagag : 284854 123 : AspArgLysAlaMetLeuIleAsnAlaLysThrGlyArgValLeuThrMetValCysM : 142 :::|||::: ||| ! !!:!|||!:!! !|||||| !|||.!!!!: !!||| GluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysA 284855 : gagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCG : 284914 143 : etPheLeuMetTyrGlyGlyGlyMetProTyrValThrIleValProLeu<->ThrLy : 160 !!!!||||||..!||||||.!. !|||..!|||:!::!!|||||| ||| laGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysThrVa 284915 : CCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGT : 284971 161 : sGlyValThrMetValGlyAsnValSerTyrArgHisLeuAlaTyrProSerTyrTyr : 179 ! !!..! !!!::!!! !|||! !!!! ||| !! !|||!:!|||! !||| ! lArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArg 284972 : ACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGC : 285028 180 : IlePhePheAsnProHisValArgProIleTyrAspValIlePheAlaThrHisCysI : 199 !.!!.!!:!!|||!.!..!!!!||| !:!!!::!!:!: !! !!!.|||: GlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysL 285029 : GGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCT : 285088 200 : leCysGlyPheThrArgTyrThrIleThrCysAlaValTyrSerIleValIleIleCy : 218 !:..!!.!|||..!! !|||:!!:!!||| !!.!!.!! !|||:!:!.! !:!:! euAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPh 285089 : TGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTT : 285145 219 : sValMetHisIleCysSerArgIleAlaIleThrSerSerMetLeuGlnArgLeuAla : 237 !|||||||||:!!|||.!!!:!.!! !||| ! !!!!! !|||.!.!:!|||!.! eValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuVal 285146 : CGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTC : 285202 238 : AspAspSerAspGlyArgLeu<->LeuGlyThrAlaValLysHisHisLeuAspIleL : 256 |||! ! ! |||||| ! |||.!!||| !! !:!!!..! !||||||: AspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleI 285203 : GACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCA : 285262 257 : euLysPheAlaThrLys >>>> Target Intron 1 >>>> LeuGluAsnIle : 265 !!:!! ! ! !||| 1432 bp :!!|||...:!! leGluHisHisLeuLys-+ +-IleGluGlyLeu 285263 : TCGAGCATCATCTGAAGat.........................aaATCGAGGGGCTC : 286721 266 : PheLysGluIlePheLeuAlaGluValLeuGlySerThrTyrGlnIleCysLeuLeuG : 285 .!.!!.||||||! !!!!!.!||||||:!!|||!!!|||! .!.||||||!!!|||| LeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsnIleCysPheLeuG 286722 : CTAAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGG : 286781 286 : lyTyrTyrPheIleThr >>>> Target Intron 2 >>>> GluTyrGluGln : 294 ||||||||!!.:!:||| 80 bp |||!::|||||| lyTyrTyrLeuLeuThr++ ++GluTrpGluGln 286782 : GATATTATTTACTGACGgt.........................agGAATGGGAGCAA : 286888 295 : ArgAlaGlyIleAlaThrAlaThrTyrLeuPheLeuPheMetSerPheValPheAsnI : 314 !!!! ! !|||!.!||| !||||||! ! |||.!.:!:||||||..!||||||: SerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerPheThrPheAsnV 286889 : AGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCACGTTCAACG : 286948 315 : lePheIleLeuCysTyrIleGlyGlnIleLeuThrGluGln >>>> Target Int : 328 !!|||||||||||||||||||||:!!||||||:!!|||||| 74 bp alPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286949 : TTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt............... : 286992 329 : ron 3 >>>> CysGluSerIleAlaThrThrAlaTyrThrSerLysTrpTyrGlnL : 343 ||| !!.!:!!!.! !:!!.!!|||! !! ! ! ||||||!::| ++CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrArgL 286993 : ..........agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTT : 287109 344 : euSerGlyArgGluAlaArgSerIleIleLeuIleValHisTrpAsnArgArgArgVa : 362 || !!|||!:! !|||!:!.!!:!:||||||||| !! ! !:::!.! ! !:! euProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIl 287110 : TGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCAT : 287166 363 : lValLeuThrAlaGlyLysMetLeuThrLeuSerLeuGluSerPheSerSerIle : 380 ! !|||||||||||||||!!::!! !|||||||||...||||||!!!|||:!: eLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSerVal 287167 : AAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTG : 287222 vulgar: NvOr6 11 380 . KQ414889.1 284508 287222 + 521 M 26 78 G 0 3 M 32 96 G 0 3 M 47 141 G 0 9 M 42 126 G 0 3 M 86 258 G 0 3 M 17 51 5 0 2 I 0 1428 3 0 2 M 29 87 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284509 287222 521 + . gene_id 1 ; sequence NvOr6 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284509 285279 . + . KQ414889.1 exonerate:protein2genome:local exon 284509 285279 . + . insertions 21 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 285280 285281 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 285280 286711 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286710 286711 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 286712 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286712 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287222 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287222 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284509 287222 521 + . alignment_id 1 ; Query NvOr6 ; Align 284509 12 78 ; Align 284590 38 96 ; Align 284689 70 141 ; Align 284839 117 126 ; Align 284968 159 258 ; Align 285229 245 51 ; Align 286712 262 87 ; Align 286879 291 111 ; Align 287064 328 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 469 Query range: 11 -> 395 Target range: 204221 -> 207607 12 : AspArgGlyPheAsnTyrAlaValLysLeuThrArgLeuLeuMetIleSerCysGlyI : 31 !!:..!! !.!.!..||||||..!:::!!!..!!:!! !:!!:!: ! ! !||| GluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyA 204222 : GAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTG : 204279 32 : leTrpProAlaLysPheSerThrSer<->PheGlnLysCysLeuArgProIleLeuIl : 49 |||||| ! ! ! !:!:!!||| ||| !!:! :!!|||! !||| ! laTrpProIleProValAsnSerSerProPheThrArgLeuValArgArgIleGluHi 204280 : CGTGGCCGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACA : 204336 50 : eIleIleCysPhePheIleMetPhePheGlnLeuIleProPheCysLeuPheMetPhe : 68 !:!!:!! !:::|||:::...|||.....!:!!:!!||| ! !|||!:!:!!||| sValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPhe 204337 : CGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTC : 204393 69 : LeuIleIleLysAspMetArgIleArgLeuLysLeuLeuGlyProLeuGlyPheSerL : 88 |||! |||:!! !:!||||||||||||:!!|||||||||:!!! ! !!!! LeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysS 204394 : CTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCA : 204453 89 : euThrSerLeuPheLysTyrValValValValIleLysAsnArgGluIleAlaLysCy : 107 !! !..!!!!||||||||| !|||:!!:!! !::!! ! !:!!||| !||| ! erIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSe 204454 : GCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAG : 204510 108 : sValGlnIleMetValAspAspTrpHisGlnLeuAsnSerThrGluAspArgLysAla : 126 !:!!.!.! !!!: ! !|||||| :!! ! !!! !|||:!!||| ! ! rLeuAsnThrIleArgArgAspTrpIleGluAla---ThrAspGluAsnArgLeuIle 204511 : TTTGAACACCATCAGACGCGACTGGATAGAGGCT---ACGGATGAAAATCGGTTGATT : 204564 127 : MetLeuIleAsnAlaLysThrGlyArgValLeuThrMetValCysMetPheLeuMetT : 146 .!.! ! !!.||||||! !|||||| !:!! !:!!:!!... ! !|||| PheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetT 204565 : TTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGT : 204624 147 : yrGlyGlyGlyMetProTyrValThrIleValProLeuThrLysGly<->ValThrMe : 164 |||||||||||:!! !||| !||||||:!!|||||| !!:!||| :!!..!! yrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleValTh 204625 : ACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTAAC : 204681 165 : tValGlyAsnValSerTyrArgHisLeuAlaTyrProSerTyrTyrIlePhePheAsn : 183 !! !||||||!!! |||! ||| !!! !||| !|||::::::||||||||| rProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePheAsn 204682 : ACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaac : 204738 184 : ProHisValArgProIleTyrAspValIlePheAlaThrHisCysIleCysGlyPheT : 203 !!!. ! !|||! !|||!!::!!:!!||| ! !!!. !!!:..!||||||. GluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheV 204739 : GAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTG : 204798 204 : hrArgTyrThrIleThrCysAlaValTyrSerIleValIleIleCysValMetHisIl : 222 .!! !|||.!!:!!! ! !!!.!..!! !.!!!!: ! :!:! !|||:!:||| alThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAl 204799 : TTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGC : 204855 223 : eCysSerArgIleAlaIleThrSerSerMetLeuGlnArgLeuAlaAspAspSerAsp : 241 ||||||! !:!: !||| ! !!:!! !:!!.!. !|||!.!||| ! :!!||| aCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAlaAsp 204856 : GTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCGGAC : 204912 242 : GlyArgLeuLeuGlyThrAlaValLysHisHisLeuAspIleLeuLysPheAlaThrL : 261 ! ! ! ! ! !!.! !!:! ! ! !||||||:!!:!!!:! !|||| ---MetThrGluThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrL 204913 : ---ATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGA : 204969 262 : ysLeuGluAsnIlePheLysGluIlePheLeuAlaGluValLeuGlySerThrTyrGl : 280 ||:!!:!!!.. ! ! |||:!! ! ! !:!!:!!|||||||||! !!:::: ysIleLysArg***Val---GluValGlyTrp***LysLeuLeuGlySerMetTrpAr 204970 : AGATAAAGAGGTGAGTG---GAAGTTGGATGGTGAAAATTGTTGGGAAGTATGTGGAG : 205023 281 : nIleCys >>>> Target Intron 1 >>>> LeuLeuGlyTyrTyrPheIleT : 290 !:!: ! 995 bp !! ! !! ! ! .!! gLeuIle-+ ++LysTyrArgThrIleValPhe* 205024 : GTTGATTct.........................agAAATACAGGACGATCGTGTTTT : 206048 291 : hrGluTyrGluGlnArgAlaGlyIleAlaThrAlaThrTyrLeuPheLeuPheMetSe : 309 !|||!::|||.!.!.! ! !! !|||..! !..!|||:!! ||| !!:|| **GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSe 206049 : AGGAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATC : 206105 310 : rPheValPheAsnIlePheIleLeuCysTyrIleGlyGlnIleLeuThrGluGln > : 328 |! !..!||| !:!!||||||||||||||||||||||||:!!|||! !!!:||| rCysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206106 : TTGTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt. : 206164 329 : >>> Target Intron 2 >>>> CysGluSerIleAlaThrThrAlaTyrThrSe : 338 81 bp !.!. !:!:!.! !|||:!!! !||| ++AsnHisValValGlyLeuThrSerCysThrVa 206165 : ........................agAACCACGTCGTGGGATTGACATCTTGCACGGT : 206273 339 : rLysTrpTyrGlnLeuSerGlyArgGluAlaArgSerIleIleLeuIleValHisTrp : 357 !!!.||||||!::||| !!..!|||.!.|||||||||!!:|||||||||:!! ! ! lAsnTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMet 206274 : GAATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATG : 206330 358 : AsnArgArgArgValValLeuThrAlaGlyLysMetLeuThrLeuSerLeuGluSerP : 377 ::!!.! !! !:!! !||||||||||||||||||!!! !:!!||||||! |||| SerAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerP 206331 : TCTAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTT : 206390 378 : heSerSer >>>> Target Intron 3 >>>> IleValLysAlaAlaGlyGly : 386 ||!!!..! 1161 bp :!!:!!|||!.!||| !||| heThrAsp++ ++ValMetLysValAlaMetGly 206391 : TCACCGATgt.........................agGTAATGAAGGTGGCGATGGGA : 207578 387 : TyrLeuAsnIleLeuArgThrAlaVal : 395 |||!!!|||||||||||| !!.!||| TyrPheAsnIleLeuArgGluValVal 207579 : TACTTCAACATACTCCGTGAAGTCGTA : 207607 vulgar: NvOr6 11 395 . KQ414889.1 204221 207607 + 469 M 28 84 G 0 3 M 79 237 G 1 0 M 42 126 G 0 3 M 80 240 G 1 0 M 24 72 G 1 0 M 15 45 5 0 2 I 0 991 3 0 2 M 45 135 5 0 2 I 0 77 3 0 2 M 52 156 5 0 2 I 0 1157 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204222 207607 469 + . gene_id 2 ; sequence NvOr6 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 204222 205031 . + . KQ414889.1 exonerate:protein2genome:local exon 204222 205031 . + . insertions 6 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 205032 205033 . + . intron_id 1 ; splice_site "CT" KQ414889.1 exonerate:protein2genome:local intron 205032 206026 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206025 206026 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206027 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206027 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206398 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206398 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206399 206400 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206399 207559 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 207558 207559 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 207560 207607 . + . KQ414889.1 exonerate:protein2genome:local exon 207560 207607 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 204222 207607 469 + . alignment_id 2 ; Query NvOr6 ; Align 204222 12 84 ; Align 204309 40 237 ; Align 204546 120 126 ; Align 204675 162 240 ; Align 204915 243 72 ; Align 204987 268 45 ; Align 206027 283 135 ; Align 206243 328 156 ; Align 207560 380 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 432 Query range: 16 -> 380 Target range: 278576 -> 280435 17 : TyrAlaValLysLeuThrArgLeuLeuMetIleSerCysGlyIleTrpProAlaLysP : 36 |||::!|||:!!:!!!.!|||! !!!!:!:! ! !! !|||:!!|||||| !!... TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 37 : heSer<->ThrSerPheGlnLysCysLeuArgProIleLeuIleIleIleCysPhePh : 54 !!!!! |||!!!!!.:!!||| ! ! ! !:!!||| :!!||| !!! !|| euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 55 : eIleMetPhePheGlnLeuIleProPheCysLeuPheMetPheLeu<->IleIleLys : 72 |:!:!!: !|||! |||:!!|||! !..!|||! !! ! ||| ! !! ! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 73 : AspMetArgIleArgLeuLysLeuLeuGlyProLeuGlyPheSerLeuThrSerLeuP : 92 |||:!: !! !:!:!!|||:!!:!!|||||||||.!!|||!!! !! !:!! !. AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 93 : heLysTyrValValValValIleLysAsnArgGluIleAlaLysCysValGlnIleMe : 111 !!|||||| !:!!:!!:!! :::..! !!:!!|||!.!|||||||||.!. !!! leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 112 : tValAspAspTrpHis<-><-><->GlnLeuAsnSerThrGluAspArgLysAlaMet : 127 : ! |||||| ! ..!! !...... |||:::|||::: ||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 128 : LeuIleAsnAlaLysThrGlyArgValLeuThrMetValCysMetPheLeuMetTyrG : 147 ! !!:!|||!:!! !|||||| !|||.!!!!: !! !! !!!!||||||. ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 148 : lyGlyGlyMetProTyrValThrIleValProLeuThrLysGlyValThr<->MetVa : 165 .!||||||:!: !|||..!.!!:!::!!|||||| ! !! ! !||| !!::! erGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIl 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCAT : 279039 166 : lGlyAsnValSerTyrArgHisLeuAlaTyrProSerTyrTyrIlePhePheAsnPro : 184 !! !|||! !!!! ||| !! !|||!:!|||! !||| ! !.!!.!!:!!||| eAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 279040 : CGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCG : 279096 185 : HisValArgProIleTyrAspValIlePheAlaThrHisCysIleCysGlyPheThrA : 204 !.!..!!!!||| !:!!!::!!:!: !! !!!.|||:!:..!!.!|||..! ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValL 279097 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTT : 279156 205 : rgTyrThrIleThrCysAlaValTyrSerIleValIleIleCysValMetHisIleCy : 223 !|||:!!:!!||| !!.!!.!! !|||:!::!! !:!:! !|||||||||:!!|| euTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCy 279157 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTG : 279213 224 : sSerArgIleAlaIleThrSerSerMetLeuGlnArgLeuAlaAspAspSerAspGly : 242 |.!!!:!.!! !||| ! !!!!! !|||.!.!:!||| !|||! ! ! ||| sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLysGly 279214 : TGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGG : 279270 243 : Arg<->LeuLeuGlyThrAlaValLysHisHisLeuAspIleLeuLysPheAlaThrL : 261 ||| !|||.!!||| !! !:!!!..! !||||||:!!:!! ! ! !| ArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuL 279271 : AGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGA : 279330 262 : ysLeuGlu{As} >>>> Target Intron 1 >>>> {n}IlePheLysGluIl : 269 ||:!! !{..} 672 bp {!}! ! ! !!::! ysIleLeu{Gl}++ -+{y}AsnArgAspAspLe 279331 : AGATACTG{GG}gt.........................gg{T}AACAGAGACGACTT : 280026 270 : ePheLeuAlaGluValLeuGlySerThrTyrGlnIleCysLeuLeuGlyTyrTyrPhe : 288 !! !! ! !.!.:!!:!! !:!!! ! ! !.!! !:!!! !..!! ! !! uCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerLeuSerVal 280027 : ATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGTTGTCAGTT : 280083 289 : IleThrGluTyrGluGlnArgAlaGlyIleAlaThrAlaThrTyrLeuPheLeuPheM : 308 .!! !|||!::||||||!.!! !!.!|||!.!||| !|||||||||.!.!!!.!!! Phe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuI 280084 : TTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCA : 280143 309 : etSerPheValPheAsnIlePheIleLeuCysTyrIleGlyGlnIleLeuThrGluGl : 327 !:|||!!...!||||||:!!|||||||||||||||||||||:!!||||||:!!||||| leSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGl 280144 : TATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACa : 280200 328 : n >>>> Target Intron 2 >>>> CysGluSerIleAlaThrThrAlaTyrT : 337 | 74 bp ||| !!.!:!!!.!..!:!!.!!|||! n++ ++CysLeuLysValGlyValSerThrTyrM 280201 : ggt.........................agTGCTTAAAAGTCGGCGTGTCAACTTACA : 280304 338 : hrSerLysTrpTyrGlnLeuSerGlyArgGluAlaArgSerIleIleLeuIleValHi : 356 !! ! ! ||||||!::||| !!|||!:!:!!|||!:!.!!:!:||||||||| !! etIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAl 280305 : TGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGC : 280361 357 : sTrpAsnArgArgArgValValLeuThrAlaGlyLysMetLeuThrLeuSerLeuGlu : 375 ! !:::!.! ! !:!! !|||||||||||||||!!::!! !|||||||||... aValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSer 280362 : CGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGC : 280418 376 : SerPheSerSerIle : 380 ||||||!!!|||:!: SerPheCysSerVal 280419 : AGCTTCTGCAGCGTG : 280435 vulgar: NvOr6 16 380 . KQ414889.1 278576 280435 + 432 M 21 63 G 0 3 M 32 96 G 0 3 M 47 141 G 0 9 M 47 141 G 0 3 M 80 240 G 0 3 M 20 60 S 0 2 5 0 2 I 0 668 3 0 2 S 1 1 M 63 189 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 280435 432 + . gene_id 3 ; sequence NvOr6 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278577 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279340 . + . insertions 21 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 280012 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280011 280012 . + . intron_id 0 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 280013 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280013 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280435 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280435 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278577 280435 432 + . alignment_id 3 ; Query NvOr6 ; Align 278577 17 63 ; Align 278643 38 96 ; Align 278742 70 141 ; Align 278892 117 141 ; Align 279036 164 240 ; Align 279279 244 60 ; Align 280014 265 189 ; Align 280277 328 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 428 Query range: 9 -> 330 Target range: 217153 -> 219448 10 : GluAsnAspArgGlyPheAsnTyrAlaValLysLeuThrArgLeuLeuMetIleSerC : 29 ||| ::::::......||| ::!:!!:!!! !!.!|||! !|||:!!! ! !! GluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProM 217154 : GAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGA : 217211 30 : ysGlyIleTrpPro<->AlaLysPheSerThrSerPheGlnLysCysLeuArgProIl : 47 |||:!!|||||| :!!::: !!!!|||!!!! !!:!||| !||| ! !:! etGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLe 217212 : TGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACT : 217268 48 : eLeuIleIleIleCysPhePheIleMetPhePheGlnLeuIleProPheCysLeuPhe : 66 ::!!! ! !:!!|||!:! !:!:!!: !|||! !!!!:!!|||! !! !:!!!:! uIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyr 217269 : GATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTAC : 217325 67 : MetPheLeuIleIleLysAspMetArgIleArgLeuLysLeuLeuGlyProLeuGlyP : 86 :!!|||||| !:!!:!!|||:!: ! !!:!|||||||||!!!||||||||| !| ValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIleP 217326 : GTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCT : 217385 87 : heSerLeuThrSerLeuPheLysTyrValValValValIleLysAsnArgGluIleAl : 105 ||!!!:!!! !:!!!!! !!|||||| ! !:!!:!!:!! ! !!. !!!:||| heCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleAr 217386 : TCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCG : 217442 106 : aLysCysValGlnIleMetValAspAspTrpHisGlnLeuAsnSerThrGluAspArg : 124 !:!!||||||::!! !!!:! ! ||||||....!.:!!!..!!! !:!!|||||| gGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArg 217443 : CGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGG : 217499 125 : LysAlaMetLeuIleAsnAlaLysThrGlyArgValLeuThrMetValCysMetPheL : 144 :!!||||||:!!:!:||||||!!. !|||||| !|||..!:!::!!|||! |||! GluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPheP 217500 : GAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCT : 217559 145 : euMetTyrGlyGlyGlyMetProTyrValThrIleValProLeuThrLysGly<-><- : 162 !!||||||.!!||| ::: ||| ! !:!!|||:!!!:! !||| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIl 217560 : TCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAAT : 217616 163 : >ValThrMetValGlyAsnValSerTyrArgHisLeuAlaTyrProSerTyrTyrIle : 180 :!!:!! ! !||||||:!!!!!!:!! !! |||!.!!:!|||! ! ! ! eLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyr 217617 : TCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTAT : 217673 181 : PhePheAsnProHisValArgProIleTyrAspValIlePheAlaThrHisCysIleC : 200 .!!.!!:!! !!!.! !! !|||! !!!!::!!:!:||| ! !!!.! |||. IleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleA 217674 : ATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCG : 217733 201 : ysGlyPheThrArgTyrThrIleThrCysAlaValTyrSerIleValIleIleCysVa : 219 .!||| ! !! !:!! !||||||! |||!.!! !|||:!:!.! ! !! !!. laGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAl 217734 : CTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGC : 217790 220 : lMetHisIleCysSerArgIleAlaIleThrSerSerMetLeuGlnArgLeuAlaAsp : 238 !:!:||| !|||.!!!:!|||! !:!: !! !!:! !||||||!.!||| !||| aValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAsp 217791 : GGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGAC : 217847 239 : AspSerAspGly >>>> Target Intron 1 >>>> ArgLeuLeuGlyThrAl : 248 ! !!!!! ! ! 1245 bp !.!:!!|||||| !:! GlyArgAlaAsp-+ +-HisIleLeuGlyGlySe 217848 : GGTAGAGCGGATat.........................aaCATATCTTGGGTGGTTC : 219122 249 : aValLysHisHisLeuAsp--IleLeuLysPheAlaThrLysLeuGluAsnIlePheL : 267 !! !||| ! |||!!!|||## ...:::||| ||| !|||!..! !.!!: rGlyLysLysHisPheAsp##TyrPheArgPheLeuThrLeuThrGluArgThrLeuG 219123 : AGGGAAAAAGCATTTCGACggtatttcagatttttgaCGCTCACAGAGAGAACCCTCC : 219181 268 : ysGluIlePheLeuAlaGluValLeuGlySerThrTyrGlnIleCysLeuLeuGlyTy : 286 !!:!!|||! !!!!|||||| !!||||||!!!||| .!.|||||||||:!!||||| lnGlnIleSerPheAlaGluPheLeuGlyCysThrMetAspIleCysLeuValGlyTy 219182 : AGCAAATCTCTTTCGCTGAATTTCTAGGATGCACCATGGACATATGTCTCGTTGGATA : 219238 287 : rTyrPheIleThr >>>> Target Intron 2 >>>> GluTyrGluGlnArgA : 296 ||||.!!|||..! 76 bp |||!:::!!..!!.!! rTyrIleIleVal++ ++GluTrpLysSerAsnA 219239 : TTACATTATCGTGgt.........................agGAATGGAAATCGAATG : 219344 297 : laGlyIleAlaThrAlaThrTyrLeuPheLeuPheMetSerPheValPheAsnIlePh : 315 !! !! ::!.!!!.!||||||:!!.!!|||.!!!!:|||.!....||||||||||| spValThrSerAlaValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePh 219345 : ATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCCTcactttcaacatttt : 219401 316 : eIleLeuCysTyrIleGlyGlnIleLeuThrGluGlnCysGluSer : 330 ||||...||||||||||||:!!|||:!!.!!|||||| |||::: eIlePheCysTyrIleGlyGluIleValAlaGluGlnValGluThr 219402 : catattttgctaCATAGGAGAGATCGTTGCTGAACAggtagaaaca : 219448 vulgar: NvOr6 9 330 . KQ414889.1 217153 219448 + 428 M 24 72 G 0 3 M 128 384 G 0 6 M 81 243 5 0 2 I 0 1241 3 0 2 M 12 36 F 0 2 M 36 108 5 0 2 I 0 72 3 0 2 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217154 219448 428 + . gene_id 4 ; sequence NvOr6 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217154 217861 . + . KQ414889.1 exonerate:protein2genome:local exon 217154 217861 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217862 217863 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 217862 219106 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219105 219106 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 219107 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219107 219252 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219448 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219448 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217154 219448 428 + . alignment_id 4 ; Query NvOr6 ; Align 217154 10 72 ; Align 217229 34 384 ; Align 217619 162 243 ; Align 219107 243 36 ; Align 219145 255 108 ; Align 219329 291 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 289 Query range: 17 -> 236 Target range: 221381 -> 222047 18 : AlaValLysLeuThrArgLeuLeuMetIleSerCysGlyIleTrpProAlaLysPheS : 37 ::!|||:!!|||!:!|||! !:!!:!!! !! !|||:!!|||||| !..! !! SerValGlnLeuSerArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaA 221382 : AGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCA : 221439 38 : erThrSer<->PheGlnLysCysLeuArgProIleLeuIleIleIleCysPhePheIl : 55 :!! !||| ! :!!!:!! !||| ! !:!::!!! !:!!:!!|||!:! !:! snIleSerThrValGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLe 221440 : ACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCT : 221496 56 : eMetPhePheGlnLeuIleProPheCysLeuPheMetPheLeuIleIleLysAspMet : 74 :!!: |||! |||:!!|||! ! !!|||!:!:!!.!!||| !:!!:!!|||:!: uIleThrPheLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspVal 221497 : GATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTC : 221553 75 : ArgIleArgLeuLysLeuLeuGlyProLeuGlyPheSerLeuThrSerLeuPheLysT : 94 !! !|||:!!||||||||||||||||||.!!|||!!!:!!! !:!!!!!.!.|||| TyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysT 221554 : TACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGT : 221613 95 : yrValValValValIleLysAsnArgGluIleAlaLysCysValGlnIleMetValAs : 113 || !:!!:!!:!!:!! ! .!.!.!!!:||| !:!!|||:!!:!! !!!:! ! yrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTr 221614 : ATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATG : 221670 114 : pAspTrpHisGlnLeuAsnSerThrGluAspArgLysAlaMetLeuIleAsnAlaLys : 132 |||||| ! .!.:!!!.!! !:!!:!!|||!:! ! !|||:!! ||||||! pAspTrpLysAsnIleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIle 221671 : GGATTGGAAGAATATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATT : 221727 133 : ThrGlyArgValLeuThrMetValCysMetPheLeuMetTyrGlyGlyGlyMetProT : 152 !|||||| !|||! !|||:!!|||! |||!!!||||||.!!||| ::: | PheGlyArgArgLeuIleMetIleCysThrPhePheMetTyrSerGlyPheValPheT 221728 : TTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGTACAGTggtttcgtttttt : 221787 153 : yrValThrIleValProLeuThrLysGlyValThrMetValGly<-><->AsnValSe : 169 || ! !:!!|||!!!!:! !||| !! ! !.! ! ||||||:: yrTyrIleAlaIleProPheSerValGlyLysIleProAlaGlnAspValAsnValTh 221788 : attacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaac : 221844 170 : rTyrArgHisLeuAlaTyrProSerTyrTyrIlePhePheAsnProHisValArgPro : 188 :::: ! :!!!.!!:!|||! !! .!!.!! !!:!! !!!.. !!!!||| rPheIleProMetValPheProPheSerArgPheIleValAspThrArgTyrSerPro 221845 : ttttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCT : 221901 189 : IleTyrAspValIlePheAlaThrHisCysIleCysGlyPheThrArgTyrThrIleT : 208 :!! !!!!::!!:!:|||:!! !!!. !!!:...||| ! !! !:!!!:!|||| ValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleT 221902 : GTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTA : 221961 209 : hrCysAlaValTyrSerIleValIleIleCysValMetHisIleCysSerArgIleAl : 227 ||! |||!.!! !|||:!:||| !!!:! !!.!:!!||| !|||.!!!:!!!: hrSerAlaAlaCysSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMetGl 221962 : CATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCA : 222018 228 : aIleThrSerSerMetLeuGlnArgLeu : 236 !:!: !! !||| !|||:!!!.!||| nValLeuMetSerTrpLeuLysHisLeu 222019 : AGTGTTGATGAGCTGGCTGAAACATTTG : 222047 vulgar: NvOr6 17 236 . KQ414889.1 221381 222047 + 289 M 22 66 G 0 3 M 127 381 G 0 6 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221382 222047 289 + . gene_id 5 ; sequence NvOr6 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221382 222047 . + . KQ414889.1 exonerate:protein2genome:local exon 221382 222047 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221382 222047 289 + . alignment_id 5 ; Query NvOr6 ; Align 221382 18 66 ; Align 221451 40 381 ; Align 221838 167 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 273 Query range: 14 -> 238 Target range: 226924 -> 227605 15 : PheAsnTyrAlaValLysLeuThrArgLeuLeuMetIleSerCysGlyIleTrpPro< : 34 !!.||| ::!:!!:!!|||!.!|||! !|||:!!! ! !! !|||||||||||| LeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProS 226925 : TTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGT : 226982 35 : ->AlaLysPheSerThrSerPheGlnLysCysLeuArgProIleLeuIleIleIleCy : 52 :!!::: |||:!! !!.!. !!:!|||!!! ! !:!::!! !.!!:!!|| erSerArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCy 226983 : CGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTG : 227039 53 : sPhePheIleMetPhePheGlnLeuIleProPheCysLeuPheMetPheLeuIleIle : 71 |!:! :!:||| !|||:!!|||:!! !! ! !!|||!:!:!! !!||| :!: sTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluVal 227040 : TTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTG : 227096 72 : LysAspMetArgIleArgLeuLysLeuLeuGlyProLeuGlyPheSerLeuThrSerL : 91 |||! ! !! !! !||||||:!!:!!||||||:!!..!|||! ! !! !|||| LysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerL 227097 : AAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCC : 227156 92 : euPheLysTyrValValValValIleLysAsnArgGluIleAlaLysCysValGlnIl : 110 ||.!!|||||| !:!!:!!..!.!! ! .!. !!!:||| !:!!||||||:!! euLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluAr 227157 : TCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACG : 227213 111 : eMetValAspAspTrpHisGlnLeuAsnSerThrGluAspArgLysAlaMetLeuIle : 129 !!: ! |||||| ! .!.:!!!..! ! !|||||||||!!.!.!|||:!!! gIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThr 227214 : GATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACG : 227270 130 : AsnAlaLysThrGlyArgValLeuThrMetValCysMetPheLeuMetTyrGlyGlyG : 149 !!||| ! !|||||| !|||! !! :!!|||! !|||!!!:!:!:!...... TyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerP 227271 : TACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtt : 227330 150 : lyMetProTyrValThrIleValProLeuThrLysGly<-><->ValThrMetValGl : 166 ::: ::: ! !:!!||||||:!!!.! ||| !.!||| !! !|| heValPhePheTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGl 227331 : tcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGG : 227387 167 : yAsnValSerTyrArgHisLeuAlaTyrProSerTyrTyrIlePhePheAsnProHis : 185 |||| !||||||! !!!.:!! !!!:!|||! ! ! |||.!! !:!! !!.! yAsnHisSerTyrIleGlnMetProPheProPheProLysIleIleAlaAspValArg 227388 : AAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGT : 227444 186 : ValArgProIleTyrAspValIlePheAlaThrHisCysIleCysGlyPheThrArgT : 205 !!!!|||.!! !!!!::!!.!!|||:!!..!!!.! !:!! |||.!!..! !: TyrSerProPheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuH 227445 : TACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGC : 227504 206 : yrThrIleThrCysAlaValTyrSerIleValIleIleCysValMetHisIleCysSe : 224 !! !:!!|||! |||!.!! !|||!!:!.! !:!: !!.!:!:||| !|||.! isGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGl 227505 : ACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGG : 227561 225 : rArgIleAlaIleThrSerSerMetLeuGlnArgLeuAlaAsp : 238 !!:!!!:! !:!: ! !||| !||| !!.!||| !||| yGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAsp 227562 : TCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGAC : 227605 vulgar: NvOr6 14 238 . KQ414889.1 226924 227605 + 273 M 19 57 G 0 3 M 128 384 G 0 6 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226925 227605 273 + . gene_id 6 ; sequence NvOr6 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226925 227605 . + . KQ414889.1 exonerate:protein2genome:local exon 226925 227605 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226925 227605 273 + . alignment_id 6 ; Query NvOr6 ; Align 226925 15 57 ; Align 226985 34 384 ; Align 227375 162 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 244 Query range: 15 -> 243 Target range: 259769 -> 260462 16 : AsnTyrAlaValLysLeuThrArgLeuLeuMetIleSerCysGlyIleTrpProAlaL : 35 :!!|||::!:!!:!!!!!!.!|||! !!!!:!!! ! !! ||| !|||||| !!. AspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS 259770 : GACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTT : 259827 36 : ysPheSerThrSer<->PheGlnLysCysLeuArgProIleLeuIleIleIleCysPh : 53 .!! !||||||!!! .!!:!!||| !:!! ! !|||||||||.!!||||||!: erSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTy 259828 : CATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTA : 259884 54 : ePheIleMetPhePheGlnLeuIleProPheCysLeuPheMetPheLeuIleIleLys : 72 ! !! !!!:.!. !! |||||||||! ! ||| !|||.!.||| ! :!! rSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGlu 259885 : CAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAG : 259941 73 : AspMetArgIleArgLeuLysLeuLeuGlyProLeuGlyPheSerLeuThrSerLeuP : 92 ..!:!! !!!:!:! !|||:!!|||||||||||| ! !!!!!!!..!.!!! !. SerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysI 259942 : AGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTA : 260001 93 : heLysTyrValValValValIleLysAsnArgGluIleAlaLysCysValGlnIleMe : 111 !!!!.|||..!..!:!!:!!:!:!:!..!|||!!:||| !!..||||||:!! !:! leAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisVa 260002 : TTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGT : 260058 112 : tValAspAspTrpHisGlnLeuAsnSerThrGluAspArgLysAlaMetLeuIleAsn : 130 !! !:!!||||||... :!!!..!!! !:!!|||!:!!!.!.!||||||! ! !! lGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyr 260059 : GGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATAC : 260115 131 : AlaLysThrGlyArgValLeuThrMetValCysMetPheLeuMetTyrGlyGlyGlyM : 150 |||||| !|||||| !:!!.!! !||| ! !!!!:!! ! ||||||! !: AlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValL 260116 : GCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTC : 260175 151 : etProTyrValThrIleValProLeuThrLysGlyValThrMetValGlyAsnValSe : 169 !! !!:! ! !:!!..! !|||!:!! !! !|||! !...|||||||||! !!! euCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluTh 260176 : TGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGAC : 260232 170 : r<-><->TyrArgHisLeuAlaTyrProSerTyrTyrIlePhePheAsnProHisVal : 186 ! !!.!! ||| !!! ! !! !||| ! .!..!.||| !:!!! ! rArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAsp 260233 : GAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGAC : 260289 187 : ArgProIleTyrAspValIlePheAlaThrHisCysIleCysGlyPheThrArgTyrT : 206 !!!|||!!: !!!!::!!:!!.!!!.!..!!!.! !:!!! ||||||! ! ! !!: SerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnS 260290 : AGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATT : 260349 207 : hrIleThrCysAlaValTyrSerIleValIleIleCysValMetHisIleCysSerAr : 225 !!! !||| !!.!:!!!:!|||:!!!.! !:!! ..! ||| |||.!!!: erSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGl 260350 : CGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCA : 260406 226 : gIleAlaIleThrSerSerMetLeuGlnArgLeuAlaAspAspSerAspGlyArg : 243 !:!: !:!: !! !..! !:!! !..!!!!!.!|||!!:||| ..!||| nLeuAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArg 260407 : GTTGAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGG : 260462 vulgar: NvOr6 15 243 . KQ414889.1 259769 260462 + 244 M 24 72 G 0 3 M 130 390 G 0 6 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259770 260462 244 + . gene_id 7 ; sequence NvOr6 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259770 260462 . + . KQ414889.1 exonerate:protein2genome:local exon 259770 260462 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259770 260462 244 + . alignment_id 7 ; Query NvOr6 ; Align 259770 16 72 ; Align 259845 40 390 ; Align 260241 170 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 243 Query range: 15 -> 228 Target range: 274380 -> 275028 16 : AsnTyrAlaValLysLeuThrArgLeuLeuMetIleSerCysGlyIleTrpPro<->A : 34 :!!|||::!:!!:!!|||!.!|||! !!!!:!!! !! ||| |||||| | AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuA 274381 : GACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAG : 274438 35 : laLysPheSerThrSerPheGlnLysCysLeuArgProIleLeuIleIleIleCysPh : 53 ||..! !!!!|||!.!|||:!!::! !||| !! !:::||||||...:::|||:: laSerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTy 274439 : CCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctA : 274495 54 : ePheIleMetPhePheGlnLeuIleProPheCysLeuPheMetPheLeuIleIleLys : 72 !! !.!!!!:.!!! ! :!!|||||| ! !!! !!!:.!.|||:!! !:!! rCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGlu 274496 : CTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAA : 274552 73 : AspMetArgIleArgLeuLysLeuLeuGlyProLeuGlyPheSerLeuThrSerLeuP : 92 ..!:!:!.!:!:!:!|||||||||||||||||||||||| !!!!!!!! !.!! !. SerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyI 274553 : AGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAA : 274612 93 : heLysTyrValValValValIleLysAsnArgGluIleAlaLysCysValGlnIleMe : 111 !!!!.|||..!..!:!!:!!:!!:::!:!!:!|||||| ! ||||||:!! !|| leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 274613 : TTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACAT : 274669 112 : tValAspAspTrpHisGlnLeuAsnSerThrGluAspArgLysAlaMetLeuIleAsn : 130 | ! ||||||... :!!!.!!!! !!||||||!:!:!!!.!||||||! ||| tGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsn 274670 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAAC : 274726 131 : AlaLysThrGlyArgValLeuThrMetValCysMetPheLeuMetTyrGlyGlyGlyM : 150 ||||||! !|||||| !:!!.!!!!: !!||| ! !!!||| ! !!|||! !: AlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 274727 : GCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTC : 274786 151 : etProTyrValThrIleValProLeuThrLysGlyValThrMetValGlyAsnVal<- : 169 !: !||| !..!|||..! !!!!!|||! ! !..!..!...|||||||||! ! euCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluTh 274787 : TCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGAC : 274843 170 : ><->SerTyrArgHisLeuAlaTyrProSerTyrTyrIlePhePheAsnProHisVal : 186 !!! !.! ||| !!! ! !:!!||| ! ! .!! !! ! !!..! rArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThr 274844 : CAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACG : 274900 187 : ArgProIleTyrAspValIlePheAlaThrHisCysIleCysGlyPheThrArgTyrT : 206 !!!|||! !!!!::!!:!!.!!|||:!!!!.! !:!:! ||||||! ! ! !!: SerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnS 274901 : AGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATT : 274960 207 : hrIleThrCysAlaValTyrSerIleValIleIleCysValMetHisIleCysSerAr : 225 !!! !.!! !!.!!.!!:!|||:!!!.! !:!:! !!.! ||| !! !.!!!: erSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGl 274961 : CGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCA : 275017 226 : gIleAlaIle : 228 !:!:::!:!: nLeuSerVal 275018 : GTTGAGCGTG : 275028 vulgar: NvOr6 15 228 . KQ414889.1 274380 275028 + 243 M 18 54 G 0 3 M 135 405 G 0 6 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274381 275028 243 + . gene_id 8 ; sequence NvOr6 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274381 275028 . + . KQ414889.1 exonerate:protein2genome:local exon 274381 275028 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274381 275028 243 + . alignment_id 8 ; Query NvOr6 ; Align 274381 16 54 ; Align 274438 34 405 ; Align 274849 169 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 225 Query range: 15 -> 240 Target range: 262846 -> 263530 16 : AsnTyrAlaValLysLeuThrArgLeuLeuMetIleSerCysGlyIleTrpProAlaL : 35 :!!|||::!:!!:!!:!!!.!|||! !|||:!!! ! !! !||| !|||||| !. AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 36 : ysPheSerThrSer<->PheGlnLysCysLeuArgProIleLeuIleIleIleCysPh : 53 .. !|||! !||| .!.:!!::! !:!! !! !:!!||||||:!!:!!|||!: erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 54 : ePheIleMetPhePheGlnLeuIleProPheCysLeuPheMetPheLeuIleIleLys : 72 !! !:!!!!:.!.! ! :!!||||||! ! ||| !!!: !!||| ! !:!! rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 73 : AspMetArgIleArgLeuLysLeuLeuGlyProLeuGlyPheSerLeuThrSerLeuP : 92 :!!.!.!.!!!:!:!|||:!!:!!||||||||||||||| !!!!!!..!.!!:!!. AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 93 : heLysTyrValValValValIleLysAsnArgGluIleAlaLysCysValGlnIleMe : 111 !!!!.|||..! !:!!:!!:!! ! !:!!:!!!:||| ! ||||||||| !:! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 112 : tValAspAspTrpHisGlnLeuAsnSerThrGluAspArgLysAlaMetLeuIleAsn : 130 ! !!!:|||||| ! :!!!.!!!! !||||||!:!::: !||||||! ||| lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 131 : AlaLysThrGlyArgValLeuThrMetValCysMetPheLeuMetTyrGlyGlyGlyM : 150 |||||| !|||||| !:!!.!! !||| !.!!!!!||| ! !.!! !| AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 151 : etProTyrValThrIleValProLeuThrLysGlyValThrMetValGlyAsnValSe : 169 || ! ! ! !:!!..! !!!!!|||! ! !|||! ! !! !||||||! !!! etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 170 : r<-><->TyrArgHisLeuAlaTyrProSerTyrTyrIlePhePheAsnProHisVal : 186 ! ||| ||| !!! !||| !||| ! .!!.!! ! !!..! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 187 : ArgProIleTyrAspValIlePheAlaThrHisCysIleCysGlyPheThrArgTyrT : 206 !.!|||! !!!!::!!.!!.!!||||||!!.! !:!:! ||||||! ! ! !. AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 207 : hrIleThrCysAlaValTyrSerIleValIleIleCysValMetHisIleCysSerAr : 225 !!! !||| !!.!!.!!:!.!!!!:..! :!:! !!.! ||| !|||.!!!: laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 226 : gIleAlaIleThrSerSerMetLeuGlnArgLeuAlaAspAspSer : 240 !:!: !:!: !! !||| !:!! !..!!!!!.!:!!.!.||| nLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSer 263484 : GTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCC : 263530 vulgar: NvOr6 15 240 . KQ414889.1 262846 263530 + 225 M 24 72 G 0 3 M 130 390 G 0 6 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 263530 225 + . gene_id 9 ; sequence NvOr6 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262847 263530 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263530 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262847 263530 225 + . alignment_id 9 ; Query NvOr6 ; Align 262847 16 72 ; Align 262922 40 390 ; Align 263318 170 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 221 Query range: 15 -> 240 Target range: 266634 -> 267318 16 : AsnTyrAlaValLysLeuThrArgLeuLeuMetIleSerCysGlyIleTrpProAlaL : 35 :!!|||::!:!!:!!|||!.!|||! !!!!:!!! ! !! ||| !|||||| !! AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProL 266635 : GATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGT : 266692 36 : ysPheSerThrSer<->PheGlnLysCysLeuArgProIleLeuIleIleIleCysPh : 53 !! !|||||| .!!:!!::! !:!! ! ! !||||||:!!||||||!: euSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTy 266693 : TGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTA : 266749 54 : ePheIleMetPhePheGlnLeuIleProPheCysLeuPheMetPheLeuIleIleLys : 72 !! ! !!!:.!.||| :!!||||||! !! !!! !:!: !!||| !:!! rCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGlu 266750 : CTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAG : 266806 73 : AspMetArgIleArgLeuLysLeuLeuGlyProLeuGlyPheSerLeuThrSerLeuP : 92 ..!!!:|||! !:!:!!|||:!!!!!|||||||||.!! !!!!!!!..!.!! !. SerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyI 266807 : AGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAA : 266866 93 : heLysTyrValValValValIleLysAsnArgGluIleAlaLysCysValGlnIleMe : 111 !!!!.|||..!..!:!!:!!:!!:::!:!!:!|||||| ! ||||||:!! !|| leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 266867 : TTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACAT : 266923 112 : tValAspAspTrpHisGlnLeuAsnSerThrGluAspArgLysAlaMetLeuIleAsn : 130 | ! ||||||... :!!!.!!!! !!||||||!:!:!!!.!||||||! ||| tGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsn 266924 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAAC : 266980 131 : AlaLysThrGlyArgValLeuThrMetValCysMetPheLeuMetTyrGlyGlyGlyM : 150 |||!:!! !|||||| !:!!.!!!!: !!||| ! !!!||| ! !!|||! !: AlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 266981 : GCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTC : 267040 151 : etProTyrValThrIleValProLeuThrLysGlyValThrMetValGlyAsnValSe : 169 !: !||| !..!|||..! !!!!!|||! ! !..!..! |||||||||! !!! euGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluTh 267041 : TCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGAC : 267097 170 : r<-><->TyrArgHisLeuAlaTyrProSerTyrTyrIlePhePheAsnProHisVal : 186 ! !.!! ||| !!! ! !! !||| ! ! .!..!! ! !!..! rArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThr 267098 : TAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACC : 267154 187 : ArgProIleTyrAspValIlePheAlaThrHisCysIleCysGlyPheThrArgTyrT : 206 !!!|||! !!!!::!!:!!.!!!.!:!!!!.! !:!!! ||||||! ! ! !!: SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnS 267155 : AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATT : 267214 207 : hrIleThrCysAlaValTyrSerIleValIleIleCysValMetHisIleCysSerAr : 225 !!! !..! !!.!!.!!:!|||:!!!.! !:!:! !!.! ||| |||.!!!: erSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGl 267215 : CGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACA : 267271 226 : gIleAlaIleThrSerSerMetLeuGlnArgLeuAlaAspAspSer : 240 !:!:::!:!: !! !! ! !:!!:!!..!!!!!.!:!! ||| nLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSer 267272 : GCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCC : 267318 vulgar: NvOr6 15 240 . KQ414889.1 266634 267318 + 221 M 24 72 G 0 3 M 130 390 G 0 6 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266635 267318 221 + . gene_id 10 ; sequence NvOr6 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266635 267318 . + . KQ414889.1 exonerate:protein2genome:local exon 266635 267318 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266635 267318 221 + . alignment_id 10 ; Query NvOr6 ; Align 266635 16 72 ; Align 266710 40 390 ; Align 267106 170 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 216 Query range: 17 -> 193 Target range: 294690 -> 295227 18 : AlaValLysLeuThrArgLeuLeuMetIleSerCysGlyIleTrpProAlaLysPheS : 37 ::!:!!|||! ! !||| !|||:!!! ! !! !|||:!!|||||| !! !:!| SerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrS 294691 : AGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACA : 294748 38 : er<-><->ThrSerPheGlnLysCysLeuArgProIleLeuIleIleIleCysPhePh : 54 || !:!!.!.!..!.||| !||| ! !||||||||| ||| !! erHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLe 294749 : GTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTT : 294805 55 : eIleMetPhePheGlnLeuIleProPheCysLeuPheMetPheLeuIleIleLysAsp : 73 .! !:!:.!.||| |||:!:|||! ! ! ! !||| ! !!! !:!:|||::: uThrValLeuPheValLeuValProCysGlyTyrPheCysValPheHisValLysAsn 294806 : GACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaac : 294862 74 : MetArgIleArgLeuLysLeuLeuGlyProLeuGlyPheSerLeuThrSerLeuPheL : 93 :::::::::::!:!!|||||||||||||||:!! !!:!|||:!! !|||:!!.!!! ValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuA 294863 : gtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCA : 294922 94 : ysTyrValValValValIleLysAsnArgGluIleAlaLysCysValGlnIleMetVa : 112 :!||| ! !:!!|||:!:|||!..! !! !.!! ! ! |||:!!:!! !!!:! rgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCysIleGluAspIleGl 294923 : GGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGA : 294979 113 : lAspAspTrpHisGlnLeuAsnSerThrGluAspArgLysAlaMetLeuIleAsnAla : 131 !:!!|||||| ! !:!!:!!!:! !!||| !!||| ! !|||:!!! |||||| uAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIleMetIleLysAsnAla 294980 : GAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCG : 295036 132 : LysThrGlyArgValLeuThrMetValCysMetPheLeuMetTyrGlyGlyGlyMetP : 151 ! !..! !!:! !:!!|||:!:!.!! !! .!!:!!!!:|||.!!..!!.!:!! MetValThrGlnArgMetThrValAlaPheThrIleIleIleTyrSerSerAlaValS 295037 : ATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGT : 295096 152 : roTyrValThrIleValPro<->LeuThrLysGlyValThrMetValGlyAsnValSe : 169 !!||| !.!!||||||||| ...:::......:!! !! ! !||| !!! erTyrHisAlaIleValProPhePheSerAsnAlaLeuGluAsnLysLysAsnAsnTh 295097 : CGTATCACGCCATTGtgccatttttttcaaacgctTTGGAGAACAAGAAGAATAATAC : 295153 170 : rTyrArgHisLeuAlaTyrProSerTyrTyrIlePhePheAsnProHisValArgPro : 188 ! !||| ||| !! !|||.!!||| ! :!!||| ! :!! !!:!! !!!!||| rIleArgAlaLeuProIleProGlyTyrGluLeuPheValAspAlaTyrSerSerPro 295154 : GATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGTCCT : 295210 189 : IleTyrAspValIle : 193 ! !|||!!::!!||| ThrTyrGluIleIle 295211 : ACCTACGAGATCATA : 295227 vulgar: NvOr6 17 193 . KQ414889.1 294690 295227 + 216 M 20 60 G 0 6 M 120 360 G 0 3 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294691 295227 216 + . gene_id 11 ; sequence NvOr6 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294691 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294691 295227 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294691 295227 216 + . alignment_id 11 ; Query NvOr6 ; Align 294691 18 60 ; Align 294757 38 360 ; Align 295120 158 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 290 -> 380 Target range: 301686 -> 302036 291 : GluTyrGluGlnArgAlaGlyIleAlaThrAlaThrTyrLeuPheLeuPheMetSerP : 310 |||!:::!!.!.!!!! ! !||||||! ! !|||!:!!!! !|||!!.! !|||| GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerP 301687 : GAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGT : 301744 311 : heValPheAsnIlePheIleLeuCysTyrIleGlyGlnIleLeuThrGluGln >>> : 328 ||..!|||||||||||||||!!!||||||||||||:!!||||||:!!|||||| heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301745 : TCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt... : 301800 329 : > Target Intron 1 >>>> CysGluSerIleAlaThrThrAlaTyrThrSerL : 339 80 bp |||.....!|||!.!:!!.!!:!!||| !! ! ++CysSerGlnIleGlySerAlaSerTyrGluIleA 301801 : ......................agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCG : 301911 340 : ysTrpTyrGlnLeuSerGlyArgGluAlaArgSerIleIleLeuIleValHisTrpAs : 358 ! ||||||.!.||| !!!.!!:!..!||| !..!:!!||||||:!! ! :: spTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSe 301912 : ATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATC : 301968 359 : nArgArgArgValValLeuThrAlaGlyLysMetLeuThrLeuSerLeuGluSerPhe : 377 :!:! !! ! ! !|||||||||||||||!!::!! !|||||||||.!.!!!||| rGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPhe 301969 : GCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTC : 302025 378 : SerSerIle : 380 ||||||:!! SerSerVal 302026 : AGCTCTGTA : 302036 vulgar: NvOr6 290 380 . KQ414889.1 301686 302036 + 174 M 37 111 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301687 302036 174 + . gene_id 12 ; sequence NvOr6 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301687 302036 174 + . alignment_id 12 ; Query NvOr6 ; Align 301687 291 111 ; Align 301878 328 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 254 -> 332 Target range: 260773 -> 261859 255 : IleLeuLysPheAlaThrLysLeuGluAsnIlePheLysGluIlePheLeuAlaGluV : 274 :!:! !!..||| !:!!::::!!|||:!!:!:.!.!!...!|||! !!!! !|||: LeuCysSerPheIleSerArgIleGluAspValMetAsnArgIleCysPheLeuGluL 260774 : TTGTGCAGCTTCATATCGCGTATCGAGGATGTGATGAACCGGATATGCTTCCTGGAGT : 260831 275 : alLeuGlySerThrTyrGlnIleCysLeuLeuGlyTyrTyrPheIleThr >>>> T : 291 !!!!! !!!!!||| .!.|||||||||||||||||||||.!!:!!! ! euPheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeuMet++ 260832 : TGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATATTCTTATGgt...... : 260884 292 : arget Intron 1 >>>> GluTyrGluGlnArgAlaGlyIleAlaThrAlaThrT : 303 852 bp |||!::! :!!!:!! ! ! ! ! !:!!|||| ++GluTrpAlaGluGlnAspIleGlnAsnLeuSerThrT 260885 : ...................agGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGT : 261770 304 : yrLeuPheLeuPheMetSerPheValPheAsnIlePheIleLeuCysTyrIleGlyGl : 322 ||!!!.!.:!!.!.!!::!!.!! !||||||:!!||||||:!!||||||||||||:! yrPheMetMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGl 261771 : ATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGA : 261827 323 : nIleLeuThrGluGlnCysGluSerIleAla : 332 !||||||||||||||| :!! !:!:||| uIleLeuThrGluGlnValGlnHisLeuAla 261828 : AATACTAACGGAACAGGTACAACATTTGGca : 261859 vulgar: NvOr6 254 332 . KQ414889.1 260773 261859 + 166 M 36 108 5 0 2 I 0 848 3 0 2 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 260774 261859 166 + . gene_id 13 ; sequence NvOr6 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 260774 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260774 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261859 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261859 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 260774 261859 166 + . alignment_id 13 ; Query NvOr6 ; Align 260774 255 108 ; Align 261734 291 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 255 -> 327 Target range: 210492 -> 210774 256 : LeuLysPheAlaThrLysLeuGluAsnIlePheLysGluIlePheLeuAlaGluValL : 275 !!!!..||| !.!! ! !||||||:!!.!. ! ||||||! ||| !|||:!!: PheSerPheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGluMetV 210493 : TTCAGTTTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAATGG : 210550 276 : euGlySerThrTyrGlnIleCysLeuLeuGlyTyrTyrPheIleThr >>>> Targ : 291 !!|||!!!||| .!.!!:|||!!!|||||||||||| !!:! ! alGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210551 : TGGGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt......... : 210600 292 : et Intron 1 >>>> GluTyrGluGlnArgAlaGlyIleAlaThrAlaThrTyrL : 304 66 bp |||!::!!:...!:!! ! !|||::!!:! !||||||: ++GluTrpAspSerLysAspProIleSerSerLeuThrTyrI 210601 : ................agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACA : 210703 305 : euPheLeuPheMetSerPheValPheAsnIlePheIleLeuCysTyrIleGlyGlnIl : 323 !! ! |||.!!! ||| !!..!|||||||||||||||!!!||||||||||||:!!:! leValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluVa 210704 : TAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGT : 210760 324 : eLeuThrGluGln : 327 :|||.!!|||||| lLeuAlaGluGln 210761 : GTTGGCTGAACAg : 210774 vulgar: NvOr6 255 327 . KQ414889.1 210492 210774 + 158 M 35 105 5 0 2 I 0 62 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210493 210774 158 + . gene_id 14 ; sequence NvOr6 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 210493 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210493 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210493 210774 158 + . alignment_id 14 ; Query NvOr6 ; Align 210493 256 105 ; Align 210664 291 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 256 -> 327 Target range: 214459 -> 214740 257 : LysPheAlaThrLysLeuGluAsnIlePheLysGluIlePheLeuAlaGluValLeuG : 276 !:!||| ! ! :!!|||!!. !.!!::!:!!:!!! !!!!||||||:!!|||! ArgPheLeuGluLeuValGluLysAlaLeuArgGlnValSerPheAlaGluLeuLeuV 214460 : AGATTCTTAGAGCTCGTGGAGAAAGCACTTCGGCAAGTATCTTTCGCTGAATTATTAG : 214517 277 : lySerThrTyrGlnIleCysLeuLeuGlyTyrTyrPheIleThr >>>> Target : 291 !!!!||| .!.:!!||||||:!!|||||||||.!.|||||| 68 alCysThrValAsnLeuCysLeuValGlyTyrTyrIleIleThr++ 214518 : TATGCACGGTGAATCTCTGTCTCGTTGGATATTACATAATAACGgt............ : 214564 292 : Intron 1 >>>> GluTyrGluGlnArgAlaGlyIleAlaThrAlaThrTyrLeuP : 305 bp |||!::.!...!!.! ! !! !.!!|||!.!||||||:!! ++GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValV 214565 : .............aggAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGG : 214672 306 : heLeuPheMetSerPheValPheAsnIlePheIleLeuCysTyrIleGlyGlnIleLe : 324 ! |||!:!!!:|||......|||||||||||||||...||||||||||||:!!:!!:! alLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuVa 214673 : TGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGGCGAGCTTGT : 214729 325 : uThrGluGln : 327 !:!!|||||| lSerGluGln 214730 : GTCTGAACAG : 214740 vulgar: NvOr6 256 327 . KQ414889.1 214459 214740 + 156 M 34 102 5 0 2 I 0 64 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214460 214740 156 + . gene_id 15 ; sequence NvOr6 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214460 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214460 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214562 214563 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214562 214629 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214628 214629 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 214630 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214630 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214460 214740 156 + . alignment_id 15 ; Query NvOr6 ; Align 214460 257 102 ; Align 214630 291 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 166 -> 238 Target range: 300189 -> 300405 167 : AsnValSerTyrArgHisLeuAlaTyrProSerTyrTyrIlePhePheAsnProHisV : 186 ||| !!!!|||!:!! ||||||||||||.!!||| !! |||.!!:!! !!!!.. AsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnT 300190 : AATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAA : 300247 187 : alArgProIleTyrAspValIlePheAlaThrHisCysIleCysGlyPheThrArgTy : 205 .!!!!|||! !|||!!:::::::||| ||||||.!!...!.!.!.! !! !|| hrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTy 300248 : CCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTA : 300304 206 : rThrIleThrCysAlaValTyrSerIleValIleIleCysValMetHisIleCysSer : 224 |!.!:!:||| |||!.!||||||:!:!.! |||! !|||! |||||||||.!! rAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGly 300305 : CAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGA : 300361 225 : ArgIleAlaIleThrSerSerMetLeuGlnArgLeuAlaAsp : 238 !:!||| !||| !! !:!!! |||:!! !|||!.!!!: GlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGlu 300362 : CAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAG : 300405 vulgar: NvOr6 166 238 . KQ414889.1 300189 300405 + 151 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300190 300405 151 + . gene_id 16 ; sequence NvOr6 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 300190 300405 . + . KQ414889.1 exonerate:protein2genome:local exon 300190 300405 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300190 300405 151 + . alignment_id 16 ; Query NvOr6 ; Align 300190 167 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 256 -> 327 Target range: 263671 -> 264648 257 : LysPheAlaThrLysLeuGluAsnIlePheLysGluIlePheLeuAlaGluValLeuG : 276 !..||| ! !::::!!:!!|||:!:.!.!.. !|||! !!!!!.!|||:!!!!! SerPheIleAspArgIleLysAsnValMetSerThrIleCysPheValGluLeuPheL 263672 : AGTTTCATAGATCGTATTAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCA : 263729 277 : lySerThrTyrGlnIleCysLeuLeuGlyTyrTyrPheIleThr >>>> Target : 291 !:!!||| .!.||||||:!!||||||||||||.!.:!!||| 76 ysAlaThrLeuAspIleCysMetLeuGlyTyrTyrIleLeuThr++ 263730 : AGGCTACGCTGGATATATGCATGCTAGGTTACTACATACTTACGgt............ : 263776 292 : Intron 1 >>>> GluTyrGluGlnArgAlaGlyIleAlaThrAlaThrTyrLeuP : 305 4 bp |||!::|||...!.. ..!||||||!!!. ++GluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheM 263777 : .............agGAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCA : 264580 306 : heLeuPheMetSerPheValPheAsnIlePheIleLeuCysTyrIleGlyGlnIleLe : 324 !.:!!.!.!!:|||.!. ! !|||||||||:!!:!!||||||||||||:!!||||| etIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLe 264581 : TGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATT : 264637 325 : uThrGluGln : 327 |||||||||| uThrGluGln 264638 : GACTGAGcag : 264648 vulgar: NvOr6 256 327 . KQ414889.1 263671 264648 + 148 M 34 102 5 0 2 I 0 760 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 263672 264648 148 + . gene_id 17 ; sequence NvOr6 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 263672 263773 . + . KQ414889.1 exonerate:protein2genome:local exon 263672 263773 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263774 263775 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263774 264537 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264536 264537 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264538 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 263672 264648 148 + . alignment_id 17 ; Query NvOr6 ; Align 263672 257 102 ; Align 264538 291 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 256 -> 340 Target range: 257478 -> 258417 257 : LysPheAlaThrLysLeuGluAsnIlePheLysGluIlePheLeuAlaGluValLeuG : 276 !..||| !:!! ! :!!|||.!.:!:.!.!!...!|||! !!!! !|||:!!!!! SerPheIleSerTyrIleGluGluValMetAsnArgIleCysPheLeuGluLeuPheA 257479 : AGTTTCATATCATATATCGAGGAAGTGATGAACCGAATATGTTTTTTAGAGTTGTTTA : 257536 277 : lySerThrTyrGlnIleCysLeuLeuGlyTyrTyrPheIleThr >>>> Target : 291 !!!!!||| ||||||:!!||||||||||||.!!:!!.!! 68 rgCysThrLeuAlaIleCysMetLeuGlyTyrTyrIleLeuAla++ 257537 : GATGCACGCTGGCTATATGCATGCTGGGATACTACATTCTTGCGgt............ : 257583 292 : Intron 1 >>>> GluTyrGluGlnArgAlaGlyIleAlaThrAlaThrTyrLeuP : 305 4 bp |||!::... !!:: ::::::|||!!!. ++GluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheM 257584 : .............aggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTA : 258307 306 : heLeuPheMetSerPheValPheAsnIlePheIleLeuCysTyrIleGlyGlnIleLe : 324 !.:!!.!!!!:|||... ||||||||||||::::::||||||||||||:!!||||| etIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLe 258308 : TGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATT : 258364 325 : uThrGluGlnCysGluSerIle<->AlaThrThrAlaTyrThrSerLysTrp : 340 |||||||||| ...||| ....!!|||..! !|||||| uThrGluGlnValProGluIle***LeuIleValThrTyrValHisLysTrp 258365 : AACAGAACAGGTACCagagatttaattaattgtcaCATATGTACACAAATGG : 258417 vulgar: NvOr6 256 340 . KQ414889.1 257478 258417 + 145 M 34 102 5 0 2 I 0 680 3 0 2 M 41 123 G 0 3 M 9 27 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 257479 258417 145 + . gene_id 18 ; sequence NvOr6 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 257479 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257479 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258417 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258417 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 257479 258417 145 + . alignment_id 18 ; Query NvOr6 ; Align 257479 257 102 ; Align 258265 291 123 ; Align 258391 332 27 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 16 -> 119 Target range: 303196 -> 303502 17 : TyrAlaValLysLeuThrArgLeuLeuMetIleSerCysGlyIleTrpProAlaLysP : 36 |||!.!..!|||! !!:!!:!! !:!!:!!! ||| !||||||||||||||| !! TyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTrpProAlaValL 303197 : TACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTGGCCAGCCGTGT : 303254 37 : heSerThrSerPheGlnLysCysLeuArgProIleLeuIleIleIleCysPhePheIl : 55 !...! !!!! ! !! !|||! ! !||| !||| !:!! !! !!!.:! euAspGluThr---AlaGlyPheLeuProLysIleThrIleGlyLeuSerAsnLeuVa 303255 : TGGACGAAACC---GCAGGATTCCTACCAAAAATCACCATTGGACTCAGTAATTTGGT : 303308 56 : eMetPhePheGlnLeuIleProPheCysLeuPheMetPheLeuIleIleLysAspMet : 74 !:!:!!.||| :!!||||||! ! !||| !!!:.!.!!! ! !||||||! ! lLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnLysAspThr 303309 : TCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAAAGGATACG : 303365 75 : ArgIleArgLeuLysLeuLeuGlyProLeuGlyPheSerLeuThrSerLeuPheLysT : 94 ! !|||||||||||||||!!!|||! !|||.!!|||!!!|||! !||||||.!.|||| IleIleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLeuMetLysT 303366 : ATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTTGATGAAGT : 303425 95 : yrValValValValIleLysAsnArgGluIleAlaLysCysValGlnIleMetValAs : 113 || !!.!:!!!.!! ::!!!.! !..!||| !:!!|||:!!:!! :!! !.. yrTrpAlaLeuAlaThrArgLysProArgIleLysGluCysIleGluGluValGlnSe 303426 : ATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAGGTGCAAAG : 303482 114 : pAspTrpHisGlnLeuAsn : 119 !|||||| ! :!!:!!!:! rAspTrpLysGluValSer 303483 : TGATTGGAAAGAGGTGAGT : 303502 vulgar: NvOr6 16 119 . KQ414889.1 303196 303502 + 135 M 23 69 G 1 0 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303197 303502 135 + . gene_id 19 ; sequence NvOr6 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 303197 303502 . + . KQ414889.1 exonerate:protein2genome:local exon 303197 303502 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 303197 303502 135 + . alignment_id 19 ; Query NvOr6 ; Align 303197 17 69 ; Align 303266 41 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 301 -> 380 Target range: 244474 -> 244817 302 : ThrTyrLeuPheLeuPheMetSerPheValPheAsnIlePheIleLeuCysTyrIleG : 321 ||||||!!!.!. !.!!:!::!!.!!|||! !|||! !||||||||||||||||||. ThrTyrPheIleAlaLeuValAlaIleValSerAsnThrPheIleLeuCysTyrIleS 244475 : ACGTACTTTATAGCACTCGTTGCTATTGTTTCTAATACATTTATACTCTGTTATATCA : 244532 322 : lyGlnIleLeuThrGluGln >>>> Target Intron 1 >>>> CysGluSer : 330 !!.!.! |||||||||||| 106 bp ||| !!.! erAspArgLeuThrGluGln++ ++CysLeuLys 244533 : GCGACAGGCTGACAGAACAGgt.........................agTGCTTGAAA : 244665 331 : IleAlaThrThrAlaTyrThrSerLysTrpTyrGlnLeuSerGlyArgGluAlaArgS : 350 :!!!.! !..!!.!|||! !!!! ! |||||| ! ||| !! !|||..! !! !. ValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuA 244666 : GTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCG : 244725 351 : erIleIleLeuIleValHisTrpAsnArgArgArgValValLeuThrAlaGlyLysMe : 369 .!:!!|||||||||:!! ! ! :::!.!! ! !|||! !:!!||||||||||||:! spLeuIleLeuIleIleLysArgSerAsnMetValValGluIleThrAlaGlyLysVa 244726 : ATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCACCGCTGGAAAAGT : 244782 370 : tLeuThrLeuSerLeuGluSerPheSerSerIle : 380 :||| !:!!|||||| ! !!!|||.!!..!:!! lLeuHisMetSerLeuTyrThrPheGlyAspVal 244783 : ATTACATATGTCGCTTTACACGTTCGGCGATGTA : 244817 vulgar: NvOr6 301 380 . KQ414889.1 244474 244817 + 132 M 26 78 5 0 2 I 0 102 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244475 244817 132 + . gene_id 20 ; sequence NvOr6 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244475 244552 . + . KQ414889.1 exonerate:protein2genome:local exon 244475 244552 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244553 244554 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244553 244658 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244657 244658 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244659 244817 . + . KQ414889.1 exonerate:protein2genome:local exon 244659 244817 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244475 244817 132 + . alignment_id 20 ; Query NvOr6 ; Align 244475 302 78 ; Align 244659 328 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 326 -> 392 Target range: 264723 -> 265001 327 : GlnCysGluSerIleAlaThrThrAlaTyrThrSerLysTrpTyrGlnLeuSerGlyA : 346 ||||||:!!!.!:!!!.! !..!!.!|||! !|||!!.|||||| ! ||| !! !! GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 347 : rgGluAlaArgSerIleIleLeuIleValHisTrpAsnArgArgArgValValLeuTh : 365 :!!!: !! !..!:!:|||||||||:!! ! ::!!!! ! ! !! !!!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 366 : rAlaGlyLysMetLeuThrLeuSerLeuGluSerPheSerSer >>>> Target I : 380 ||||||||||!!:||| !:!!|||:!! ! !!!||||||..! 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 381 : ntron 1 >>>> IleValLysAlaAlaGlyGlyTyrLeuAsnIleLeuArg : 392 bp :!!:!!|||:!!:!! ! !|||||||||:!!|||||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArg 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGC : 265001 vulgar: NvOr6 326 392 . KQ414889.1 264723 265001 + 110 M 53 159 5 0 2 I 0 76 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265001 110 + . gene_id 21 ; sequence NvOr6 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265001 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265001 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265001 110 + . alignment_id 21 ; Query NvOr6 ; Align 264724 327 159 ; Align 264963 380 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr6 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 326 -> 380 Target range: 292389 -> 292551 327 : GlnCysGluSerIleAlaThrThrAlaTyrThrSerLysTrpTyrGlnLeuSerGlyA : 346 ||| !!.....!|||||| !.!!:!!||| !!!!:!!||||||.!.||| !! !!| GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 347 : rgGluAlaArgSerIleIleLeuIleValHisTrpAsnArgArgArgValValLeuTh : 365 ||:!!||||||..!|||:!!|||:!::!! ! !..!:!!.!! !:!! !||||| rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 366 : rAlaGlyLysMetLeuThrLeuSerLeuGluSerPheSerSerIle : 380 ||||||||||!!:!!!..!|||||||||.!.!!!|||.!!:!!:!! rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaVal 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTA : 292551 vulgar: NvOr6 326 380 . KQ414889.1 292389 292551 + 110 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 292551 110 + . gene_id 22 ; sequence NvOr6 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292390 292551 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 292551 110 + . alignment_id 22 ; Query NvOr6 ; Align 292390 327 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr11FIX Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 125 -> 262 Target range: 232741 -> 233149 126 : GlnIleThrAsnAspTrpArgSerProHisGlyProIleGluLeuGluIleMetGluG : 145 |||:!:! !.!.|||||||||!:! ! ! !|||:!!.!.! !!!::!:||| !: GlnValLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuL 232742 : CAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGA : 232799 146 : luAsnAlaArgPheSerArgLeuValSerAlaThrCysIlePheLeuAlaAspAlaTh : 164 !!||||||!:!.!!.!!|||! !:!!:!!..!! !..! |||! ! ! !!.!! ysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGl 232800 : AGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGG : 232856 165 : rPheAlaAlaGlnPheIleIleAlaValLeuArgIleAspAlaGlnAsnArgLeuGln : 183 ! !!!.!:!!.!. |||:!!.!!! !||||||!!:..!.!! !! ! !.!. yValGlySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsn 232857 : TGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAAC : 232913 184 : AlaAsnGlyThrAspIleAspArgProLeuTyrMetArgAlaSerPheProTyrAspS : 203 ! !!:! !:!! ! !|||! ! .!. !.!!!.!.!. |||! GluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeu---MetAspT 232914 : GAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTG---ATGGACA : 232970 204 : erGlnIleSerProAsnTyrGluLeuThrLeuAlaGlyGlnLeuPheSerAsnPhePh : 222 !!::!.!!||||||!.. !!|||:!!! !!!!!.! !|||! !.!!|||...|||.! hrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIl 232971 : CCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCAT : 233027 223 : eAlaAlaThrThrTyrThrSerIleAspSerLeuPheIleValLeuMetLeuHisLeu : 241 !!.! !:!!..! !..!.!! ! !.!!||| ! !|||||| !:!!||| ! eValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAla 233028 : CGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCG : 233084 242 : CysGlyGlnLeuSerValLeuArgLeuLysPheProGlyLeuLysGlyCysSerGlyA : 261 ||||||||||||!:!|||:!!! !! !|||!!. !! !||| !! !...!.!|||. CysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGlyG 233085 : TGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGC : 233144 262 : snGlu : 262 !.||| lnGlu 233145 : AGGAG : 233149 vulgar: NvOr11FIX 125 262 . KQ414889.1 232741 233149 + 115 M 74 222 G 1 0 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232742 233149 115 + . gene_id 1 ; sequence NvOr11FIX ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232742 233149 . + . KQ414889.1 exonerate:protein2genome:local exon 232742 233149 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 232742 233149 115 + . alignment_id 1 ; Query NvOr11FIX ; Align 232742 126 222 ; Align 232964 201 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 300 -> 388 Target range: 258270 -> 258624 301 : AspThrValGlnValThrGluLeuLeuPheMetIleTyrPheIleLeuCysIleAlaP : 320 ..!||| ...::: ...||| .!! .!.:!!:!!! ::::::| SerThrGlnAspIleGlnAsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerP 258271 : TCTACGCaagatattcaaaatttgagttcgtaCTTTATGATACTCATATcactttctt : 258328 321 : heSerLeuPheIleTyrCysTyrIleAlaGluIleLeuArgThrGlu >>>> Targ : 336 ||::::::|||::: |||||||||!.!|||||||||! ! !:!! heAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluGln++ 258329 : tcaatatttttgtaatatgttACATAGGTGAAATATTAACAGAACAGgt......... : 258378 337 : et Intron 1 >>>> SerThrGluIleGlyAsnAlaAlaTyrGluCysAsnTrpT : 349 90 bp !!!! !:!!:!!|||:!!!.!!.!||| ! :!!|||| ++CysLysLysValGlyAspValValTyrMetThrAspTrpT 258379 : ................agTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGT : 258505 350 : yrAspLeuProAlaCysGluThrArgLeuPheIleLeuThrMetIleArgSerLysTh : 368 || !!||||||! ! ..!! !! ! !!!.||||||..!!!: !||||||!.... yrTyrLeuProAspLysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerVa 258506 : ATTATCTACCTGACAAAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGT : 258562 369 : rProPheGluIleThrAlaGlyLysPheThrAlaPheSerLeuGlnLeuTyrCysSer : 387 ! ! !!:!!|||||||||||||||||| ...|||:!! ! !!:! !!..! lValValGlnIleThrAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAsp 258563 : GGTCGTTCAAATCACCGCGggaaaattctttcacatGTCCATTTACACATTCAGCGAT : 258619 388 : Ile : 388 :!: Val 258620 : GTG : 258624 vulgar: NvOr16 300 388 . KQ414889.1 258270 258624 + 114 M 35 105 5 0 2 I 0 86 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258271 258624 114 + . gene_id 1 ; sequence NvOr16 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 258271 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258271 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258271 258624 114 + . alignment_id 1 ; Query NvOr16 ; Align 258271 301 105 ; Align 258466 336 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 181 -> 238 Target range: 290236 -> 290407 182 : TyrAspValGlnLysSerProValTyrGluIleValTrpIlePheGlnCysIleAlaM : 201 !:!||||||||||||||||||!.!||||||||||||!:: !.!.!!.|||:!! !: PheAspValGlnLysSerProAlaTyrGluIleValPheCysMetHisCysValTyrV 290237 : TTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACG : 290294 202 : etHisLeuAlaGlyLeuSerPheMetAlaIleAspSerLeuPheSerIleLeuValLe : 220 !: :!!.!!!.! !! ! |||||| !!|||||| !!!|||!!!!.! alMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePheAlaTh 290295 : TCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCAC : 290351 221 : uHisLeuCysGlyGlnLeuIleAsnLeuGlnGluArgLeuLysAsnValThrGlu : 238 !||| !|||||||||:!!! ! ! ! ! !||||||:!!:!!:!!|||:!! rHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAspLeuThrLys 290352 : TCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTGACAAAG : 290407 vulgar: NvOr16 181 238 . KQ414889.1 290236 290407 + 110 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 290237 290407 110 + . gene_id 2 ; sequence NvOr16 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 290237 290407 . + . KQ414889.1 exonerate:protein2genome:local exon 290237 290407 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 290237 290407 110 + . alignment_id 2 ; Query NvOr16 ; Align 290237 182 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 182 -> 262 Target range: 300237 -> 300477 183 : AspValGlnLysSerProValTyrGluIleValTrpIlePheGlnCysIleAlaMetH : 202 |||..!|||! ||||||..!||||||||||||:::...|||...|||.!!||| ! AspThrGlnThrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaM 300238 : GATACACAAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGA : 300295 203 : isLeuAlaGlyLeuSerPheMetAlaIleAspSerLeuPheSerIleLeuValLeuHi : 221 :!! ! ! ! ! ! !||| !!|||||| :!!|||!!!||| !|| etIleMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHi 300296 : TGATCATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCA : 300352 222 : sLeuCysGlyGlnLeuIleAsnLeuGlnGluArgLeuLysAsnValThrGluAsnLeu : 240 |:!!|||||||||:!! ! ! !..!! !||||||:!!:!!:!!..!|||!.. ! sIleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThr 300353 : TATCTGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACG : 300409 241 : ThrLysArgHisAsnLeuSerTyrGlnLeuSerArgIleValMetArgHisGluGlnL : 260 !:!!!:! !!:!! ! !! !!! ||| ! !|||||| !|||! !:!!: GlyGluLysAspAspGlyProAspProLeuValValIleValArgAspHisValLysV 300410 : GGAGAGAAGGACGACGGTCCTGATCCTTTGGTCGTTATCGTTCGAGATCACGTGAAGG : 300469 261 : euAspArg : 262 !! ||| alLeuArg 300470 : TTTTAAGG : 300477 vulgar: NvOr16 182 262 . KQ414889.1 300237 300477 + 106 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300238 300477 106 + . gene_id 3 ; sequence NvOr16 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 300238 300477 . + . KQ414889.1 exonerate:protein2genome:local exon 300238 300477 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300238 300477 106 + . alignment_id 3 ; Query NvOr16 ; Align 300238 183 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr16 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 158 -> 237 Target range: 194597 -> 194834 159 : GlnGluPheIleLeuThrProAspAsnSerThrLysLeuArgProGlnTyrMetArgA : 178 ..!||| |||:!!! ! !||||||||||||:!!:!!! !! !! !|||:!!!!! SerGluArgIleValLysGluAspAsnSerThrGlnIleProLeuProTyrLeuSerA 194598 : TCGGAGAGGATTGTCAAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGCA : 194655 179 : laHisPheAlaTyrAspValGlnLysSerProValTyrGluIleValTrpIlePheGl : 197 !:!! !! !!:!! :!!:!! ! ||||||:!!|||||||||..!!:::!!! || snTyrValPhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerGl 194656 : ACTATGTTTTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCA : 194712 198 : nCysIleAlaMetHisLeuAlaGlyLeuSerPheMetAlaIleAspSerLeuPheSer : 216 | :!: !! !:!! ! !! !!!! ! !.!||| !!|||||| !!:!! nIleLeuIleSerSerIleIleLeuSerThrAsnCysGlyIleTyrSerLeuValAla 194713 : GATACTGATTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCT : 194769 217 : IleLeuValLeuHisLeuCysGlyGlnLeuIleAsnLeuGlnGluArgLeuLysAsnV : 236 ! !:!!:!!:!!|||! !|||||| !!!! ! !.....!|||:!!:!!!.!: ThrIleIleMetHisCysCysGlyLeuPheGluValThrSerArgArgMetGluThrI 194770 : ACTATTATTATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGATGGAGACTA : 194829 237 : alThr : 237 !!:!! leSer 194830 : TTTCT : 194834 vulgar: NvOr16 158 237 . KQ414889.1 194597 194834 + 100 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194598 194834 100 + . gene_id 4 ; sequence NvOr16 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194598 194834 . + . KQ414889.1 exonerate:protein2genome:local exon 194598 194834 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194598 194834 100 + . alignment_id 4 ; Query NvOr16 ; Align 194598 159 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 261 Query range: 0 -> 149 Target range: 278588 -> 279032 1 : MetSerArgTyrPheLeuArgSerIleGlyLeuTrpSerSerSerSerSerArgSerG : 20 |||!:!|||!::||||||!:! !!||||||:!!||| !! !||| !!!! !!!! MetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuCysValThrT 278589 : ATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCA : 278646 21 : lnAlaTyrLeuHisLysPheLeuAsnLeuLeuLeuIleValIleThrTyrLeuLeuIl : 39 |||.!.|||.!! !::!:!!:!!||| :!!|||!:!! !!!!||||| hr------LeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIl 278647 : CC------TTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGAT : 278697 40 : eMetPheIleLeuValProCysAlaLeuHisThrPheIleGluGluPro<->AsnMet : 57 | |||:!!|||||||||||||||||| !||| ! :!!!!::!! !! :!!:!: eGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeu 278698 : AGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTC : 278754 58 : AlaIleLysMetLysLeuIleGlyProMetSerPheAlaLeuMetAlaValThrLysT : 77 ! !! |||!!:|||:!!|||||||||:!:||||||..! !||||||..!! !|||| AspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrIleLysT 278755 : GACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAAT : 278814 78 : yrAlaSerLeuThrGlnArgThrAlaGluIleAlaGlnCysPheArgHisValGluGl : 96 || !! !|||! !..!||| !!.!:!!|||!.!:!!||| ! !.! !!:!!... yrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIleArgTh 278815 : ATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTAC : 278871 97 : uAspTrpGluAsnGlyCysAlaMetGluLysLysArgValValAlaValIleTyrArg : 115 !||||||... ! ! !:!! ...::::::... ::::!: ! rAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMetArgAsp 278872 : GGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTGAGGGAC : 278928 116 : HisAlaLysIleGlyArgSerLeuSerIlePheSerGlyIlePheMetTyrGlyGlyG : 135 !|||!:!|||||||||||||||:!!|||||||||!.! !|||||||||..!|||| SerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyG 278929 : AGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCG : 278988 136 : lyIlePheTyrHisGlyIleMetProMetAlaAlaValGlnThr : 149 ||:!!|||||| !!.!:!:||||||:!! !||||||!::||| lyValPheTyrThrAlaValMetProLeuPheAlaValArgThr 278989 : GAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACG : 279032 vulgar: NvOr4PSE 0 149 . KQ414889.1 278588 279032 + 261 M 20 60 G 2 0 M 33 99 G 0 3 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278589 279032 261 + . gene_id 1 ; sequence NvOr4PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278589 279032 . + . KQ414889.1 exonerate:protein2genome:local exon 278589 279032 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 278589 279032 261 + . alignment_id 1 ; Query NvOr4PSE ; Align 278589 1 60 ; Align 278649 23 99 ; Align 278751 56 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 257 Query range: 0 -> 149 Target range: 284535 -> 284979 1 : MetSerArgTyrPheLeuArgSerIleGlyLeuTrpSerSerSerSerSerArgSerG : 20 |||!:!|||!::||||||!:! !!||||||:!!||| !! !||| !!!! !!!! MetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuCysValThrT 284536 : ATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCA : 284593 21 : lnAlaTyrLeuHisLysPheLeuAsnLeuLeuLeuIleValIleThrTyrLeuLeuIl : 39 |||.!.|||.!! !::!:!!:!!||| :!!|||!:!! !!!!||||| hr------LeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIl 284594 : CC------TTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGAT : 284644 40 : eMetPheIleLeuValProCysAlaLeuHisThrPheIleGluGluPro<->AsnMet : 57 | |||:!!|||||||||||||||||| !||| ! :!!!!::!! !! :!!:!: eGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeu 284645 : AGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTC : 284701 58 : AlaIleLysMetLysLeuIleGlyProMetSerPheAlaLeuMetAlaValThrLysT : 77 ! !! |||!!:|||:!!|||||||||:!!||||||..!:!!||||||!.!! !|||| AspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleLysT 284702 : GACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGT : 284761 78 : yrAlaSerLeuThrGlnArgThrAlaGluIleAlaGlnCysPheArgHisValGluGl : 96 || !! !|||! !..!||| !!.!:!!|||!.!|||||| ! !:! !!:!!...! yrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIleArgAl 284762 : ATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGC : 284818 97 : uAspTrpGluAsnGlyCysAlaMetGluLysLysArgValValAlaValIleTyrArg : 115 !||||||... ! ! !:!! ...::::::... ::::!: ! aAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMetArgAsp 284819 : GGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGAC : 284875 116 : HisAlaLysIleGlyArgSerLeuSerIlePheSerGlyIlePheMetTyrGlyGlyG : 135 !|||!:!|||||||||||||||:!!||||||!!!!.! !|||||||||..!|||| SerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyG 284876 : AGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAG : 284935 136 : lyIlePheTyrHisGlyIleMetProMetAlaAlaValGlnThr : 149 ||.!!|||||| ! !:!:||||||:!!..!.!!|||!::||| lyPhePheTyrThrThrValMetProLeuCysThrValArgThr 284936 : GATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACG : 284979 vulgar: NvOr4PSE 0 149 . KQ414889.1 284535 284979 + 257 M 20 60 G 2 0 M 33 99 G 0 3 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284536 284979 257 + . gene_id 2 ; sequence NvOr4PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284536 284979 . + . KQ414889.1 exonerate:protein2genome:local exon 284536 284979 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 284536 284979 257 + . alignment_id 2 ; Query NvOr4PSE ; Align 284536 1 60 ; Align 284596 23 99 ; Align 284698 56 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 255 Query range: 271 -> 399 Target range: 286693 -> 287329 272 : LeuLysPheAlaAlaArgValGluLysTyrLeuAsnGlyIleCysPheValGluPheI : 291 !!!!..||| !:!!!:!:!!||| ! !||||||! !||||||||||||||| ! | PheSerPheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValI 286694 : TTCAGTTTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGA : 286751 292 : leGlyCysThrMetAsnIleCysPheIleGlyTyrTyrCysLeuThrGluTrpGluAr : 310 |||||||||||:!!||||||||||||:!:|||||||||! ||||||! ! |||! leGlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeuThrValThrGluTh 286752 : TTGGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTACTGACGGTAACAGAGAC : 286808 311 : gLysGluProIleSerThrThrThrTyrPheIleLeuLeuAlaProPheThrThrAsn : 329 !! !|||!!!! ! ! !!:: !|||! !:!! !!! !||| ! ! rThrCysValIleThrIleLeu***TrpGln***LeuHisSerSerCysThrArgCys 286809 : GACTTGTGTTATTACCATACTGTAATGGCAATAATTGCATTCGTCATGTACTCGTTGT : 286865 330 : IleLeuUnkGluGln >>>> Target Intron 1 >>>> CysThrArgValGl : 339 !!!.....!.!. 181 bp ||| !!:!||||| GlnPheSerArgAsn+- ++CysLeuLysValGl 286866 : CAGTTTTCTAGGAATgg.........................agtGCTTAAAAGTCGG : 287076 340 : ySerIleTyrHisThrIleAspTrpTyrAsnLeuProGlyLysSerAlaSerAspLeu : 358 |! ! ! !:!!! !||||||||||||..!||||||||||||!!!|||..!! !||| yLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeu 287077 : CTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTG : 287133 359 : PhePheIleIleAlaValSerArgTyrProAlaLysLeuThrAlaGlyLysPheValA : 378 .!..!.|||.!!|||||||||!.!! ! !! !||||||||||||||||||.!!:!!| IleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleA 287134 : ATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCG : 287193 379 : spLeuArgLeuValThrPheSerAsn >>>> Target Intron 2 >>>> Val : 387 ||||| !||| !!:!|||!!!!:! 71 bp ||| spLeuSerLeuSerSerPheCysSer++ ++Val 287194 : ATCTCTCTTTAAGCAGCTTCTGCAGCgt.........................agGTG : 287291 388 : MetLysSerAlaPheThrTyrPheAsnLeuIleArg : 399 :!!||||||||||||.!!|||.!.!:!|||:!!||| LeuLysSerAlaPheAlaTyrLeuSerLeuLeuArg 287292 : TTGAAATCGGCATTCGCATATCTGAGCTTATTACGT : 287329 vulgar: NvOr4PSE 271 399 . KQ414889.1 286693 287329 + 255 M 63 189 5 0 2 I 0 177 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286694 287329 255 + . gene_id 3 ; sequence NvOr4PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286694 286882 . + . KQ414889.1 exonerate:protein2genome:local exon 286694 286882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286883 286884 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local intron 286883 287063 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287220 287221 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 287220 287290 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 287289 287290 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 287291 287329 . + . KQ414889.1 exonerate:protein2genome:local exon 287291 287329 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286694 287329 255 + . alignment_id 3 ; Query NvOr4PSE ; Align 286694 272 189 ; Align 287064 335 156 ; Align 287291 387 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 234 Query range: 271 -> 397 Target range: 279906 -> 280465 272 : LeuLysPheAlaAlaArgValGluLysTyrLeuAsnGlyIleCysPheValGluPheI : 291 !!!!..||| !:!!!:!:!!||| ! !||||||! !||||||||||||||| ! | PheSerPheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValI 279907 : TTCAGTTTTATATCGCAAATCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTGA : 279964 292 : leGlyCysThrMetAsnIleCysPheIleGlyTyrTyrCysLeuThrGluTrpGluAr : 310 |||||||||||:!!||||||||||||:!: !||||||! ||||||! ! |||! leGlyCysThrLeuAsnIleCysPheLeuThrTyrTyrLeuLeuThrValThrGluTh 279965 : TTGGTTGCACGTTGAACATATGCTTTTTGACATATTATTTACTCACGGTAACAGAGAC : 280021 311 : gLysGluProIleSerThrThrThrTyrPheIleLeuLeuAlaProPheThrThrAsn : 329 !! ! !||||||! ! ! !!:: ! !|||! !:!! !!! !||| ! ! rThrTyrValIleSerIleLeu***TrpGlnLysLeuHisSerSerCysThrArgCys 280022 : GACTTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGTTGT : 280078 330 : IleLeuUnkGluGln >>>> Target Intron 1 >>>> CysThrArgValGl : 339 !!!.....!.!. 181 bp ||| !!:!||||| GlnPheSerArgAsn+- ++CysLeuLysValGl 280079 : CAGTTTTCTAGGAATgg.........................agTGCTTAAAAGTCGG : 280289 340 : ySerIleTyrHisThrIleAspTrpTyrAsnLeuProGlyLysSerAlaSerAspLeu : 358 | ! ! !:!!! !||||||||||||..!||||||||||||!.!|||..!! !||| yValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeu 280290 : CGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTG : 280346 359 : PhePheIleIleAlaValSerArgTyrProAlaLysLeuThrAlaGlyLysPheValA : 378 .!..!.|||.!!|||||||||!.!! ! !! !||||||||||||||||||.!!:!!| IleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleA 280347 : ATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCG : 280406 379 : spLeuArgLeuValThrPheSerAsnValMetLysSerAlaPheThrTyrPheAsnLe : 397 ||||| !||| !!:!|||!!!!:!|||! ! ! ! !!!.:!!|||!:!:!!|| spLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyrHisLe 280407 : ATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTT : 280463 398 : u : 397 | u 280464 : G : 280465 vulgar: NvOr4PSE 271 397 . KQ414889.1 279906 280465 + 234 M 63 189 5 0 2 I 0 177 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 279907 280465 234 + . gene_id 4 ; sequence NvOr4PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 279907 280095 . + . KQ414889.1 exonerate:protein2genome:local exon 279907 280095 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280096 280097 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local intron 280096 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 279907 280465 234 + . alignment_id 4 ; Query NvOr4PSE ; Align 279907 272 189 ; Align 280277 335 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 202 Query range: 0 -> 145 Target range: 221390 -> 221810 1 : MetSerArgTyrPheLeuArgSerIleGlyLeuTrpSerSerSerSerSerArgSerG : 20 :!!||||||!::.!!|||!:! !!||||||:!!||| !!!:!|||:!!!:!! !||| LeuSerArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaAsnIleSerT 221391 : TTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCAACATTTCCA : 221448 21 : lnAlaTyrLeuHisLysPheLeuAsnLeuLeuLeuIleValIleThrTyrLeuLeuIl : 39 ! :!!.!.!:!!:!||| !!! !|||:!!! !|||:!! !||| !||||| hr------ValGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLeuIl 221449 : CG------GTAGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCTGAT : 221499 40 : eMetPheIleLeuValProCysAlaLeuHisThrPheIleGluGluProAsnMetAla : 58 |! !|||:!!||||||||||||::!|||:!!..!.!!:!!|||! ! !:!!:!: ! eThrPheLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspValTyr 221500 : CACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTCTAC : 221556 59 : IleLysMetLysLeuIleGlyProMetSerPheAlaLeuMetAlaValThrLysTyrA : 78 ! !!:!!!:||||||:!:||||||:!!||||||..!:!!|||||| !! !|||||| AsnArgIleLysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysTyrH 221557 : AATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGTATC : 221616 79 : laSerLeuThrGlnArgThrAlaGluIleAlaGlnCysPheArgHisValGluGluAs : 97 ! !|||! !! ! ! !!!:||| !:!!|||.!!..!!.!:!!||| !|| isLeuLeuIleLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTrpAs 221617 : ATCTGTTGATACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATGGGA : 221673 98 : pTrpGluAsnGlyCysAlaMetGluLysLysArgValValAlaValIleTyrArgHis : 116 ||||:!!||| ! ! ! :!! ! ||| ! !:!!!!: ..!:!! pTrpLysAsnIleThrTyrSerLysAspLys---------AspIleMetIleGluAsn 221674 : TTGGAAGAATATCACTTACTCCAAGGATAAG---------GATATAATGATAGAGAAC : 221721 117 : AlaLysIleGlyArgSerLeuSerIlePheSerGlyIlePheMetTyrGlyGlyGlyI : 136 |||! .!!|||||| !!|||! !!!:.!!!!! !.!!|||||||||.!!||| : AlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheMetTyrSerGlyPheV 221722 : GCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGTACAGTggtttcg : 221781 137 : lePheTyrHisGlyIleMetProMetAla : 145 ::||||||::: ! !!!:|||.!.::! alPheTyrTyrIleAlaIleProPheSer 221782 : ttttttattacatAGCCATACCGTTTAGC : 221810 vulgar: NvOr4PSE 0 145 . KQ414889.1 221390 221810 + 202 M 20 60 G 2 0 M 85 255 G 3 0 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221391 221810 202 + . gene_id 5 ; sequence NvOr4PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221391 221810 . + . KQ414889.1 exonerate:protein2genome:local exon 221391 221810 . + . insertions 0 ; deletions 5 KQ414889.1 exonerate:protein2genome:local similarity 221391 221810 202 + . alignment_id 5 ; Query NvOr4PSE ; Align 221391 1 60 ; Align 221451 23 255 ; Align 221706 111 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 198 Query range: 110 -> 258 Target range: 300018 -> 300459 111 : AlaValIleTyrArgHisAlaLysIleGlyArgSerLeuSerIlePheSerGlyIleP : 130 .!!:!!!!:! |||:!!!.!! !!:.!!|||!:!|||!!!! ! ! !!!!.!:!:| ThrIleMetLeuArgTyrValThrMetSerArgAsnLeuThrThrValCysAlaValP 300019 : ACGATCATGTTGAGATACGTGACTATGAGCAGAAATCTGACGACCGTGTGCGCCGTGT : 300076 131 : heMetTyrGlyGlyGlyIlePheTyrHisGlyIleMetProMetAlaAlaValGlnTh : 149 ||:!:|||!.!||||||!!:! |||||| !:!:|||! !.!. !:!! !.!.! heLeuTyrAlaGlyGlyMetSerTyrHisThrValMetGlnPheLeuSerLysAspAr 300077 : TTCTTTACGCAGGTGGTATGTCGTATCACACGGTGATGCAGTTCTTATCGAAGGACAG : 300133 150 : rPheSerAlaSerIleAspAsnSerLeuSerLeuAsnThrSerSerValLeuGluVal : 168 ! !|||! !! !:!:...!....! !||| !||| !!!!! ! ! !||| gSerSerGluPheLeuSerArgGluLysSerLysAsnTyrThrTyrLysArgGlu--- 300134 : AAGCAGCGAGTTCCTGTCGAGGGAGAAAAGCAAGAATTACACTTACAAAAGGGAG--- : 300190 169 : AlaLysLysProArgIleLeuThrPheProThrTyrAsnAlaTrpLeuAsnIleGluI : 188 ! ! ! !!:! |||.!!!:!||| !|||:!! !!:::!!:!!! !:!!! AsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnT 300191 : AATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAA : 300247 189 : leSerProIleTyrGluIleValTyrLeuLeuGlnCysPheSerGlyPheValLeuAs : 207 !||||||! !||||||||||||:::.........||||||:!!!.!.!.:!!:!! ! hrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTy 300248 : CCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTA : 300304 208 : pThrValThrValGlyThrCysSerLeuAlaAlaValPheValThrHisThrCysAla : 226 !!.!||||||..!!.!.!!! !||||||||||||:!!||||||||||||! !|||!.! rAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGly 300305 : CAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGA : 300361 227 : GlnLeuGluLeuValMetMetLeuIleArgArgTyrIleAspGlyAspValGlyProA : 246 |||:!!:!!:!! !||| ! !:!:..! ! :!:!!: !! ! !! ! !| GlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrGlyGluLysA 300362 : CAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGGGAGAGAAGG : 300421 247 : spAspValProTyrProLysAspAlaThrThrArgGlu : 258 |||||! !||| !!||| !! !!.!! !..!|||!!: spAspGlyProAspProLeuValValIleValArgAsp 300422 : ACGACGGTCCTGATCCTTTGGTCGTTATCGTTCGAGAT : 300459 vulgar: NvOr4PSE 110 258 . KQ414889.1 300018 300459 + 198 M 57 171 G 1 0 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300019 300459 198 + . gene_id 6 ; sequence NvOr4PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 300019 300459 . + . KQ414889.1 exonerate:protein2genome:local exon 300019 300459 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 300019 300459 198 + . alignment_id 6 ; Query NvOr4PSE ; Align 300019 111 171 ; Align 300190 169 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 189 Query range: 174 -> 305 Target range: 217651 -> 219249 175 : LeuThrPheProThrTyrAsnAlaTrpLeuAsnIleGluIleSerProIleTyrGluI : 194 |||..!|||||| ! !!. ! :!!:!!! !... !!!!|||! !!|||| LeuValPheProPheThrLysTyrIleIleAspThrArgTyrThrProThrAsnGluI 217652 : TTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCTACGAACGAAA : 217709 195 : leValTyrLeuLeuGlnCysPheSerGlyPheValLeuAspThrValThrValGlyTh : 213 |||||!:!!!!||||||! .!!:!!||| !:!!:!! !! !:!!||| !!.!.! leValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAl 217710 : TTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGC : 217766 214 : rCysSerLeuAlaAlaValPheValThrHisThrCysAlaGlnLeuGluLeuValMet : 232 !|||||||||||||||!.!|||!.!..!|||.!!|||!.!|||:!!|||:!!:!!||| aCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGluValLeuMet 217767 : TTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATG : 217823 233 : MetLeuIleArgArgTyrIleAspGlyAspValGlyProAspAspValProTyrProL : 252 ! ! !:!:!:!!.!! ||||||||| !.!! ! !..!|||..! ! !! !! AsnTrpLeuGlnHisLeuIleAspGlyArgAlaAspMetSerAspThrValAspGlyA 217824 : AACTGGCTGCAACATTTAATCGACGGTAGAGCGGATATGAGCGATACTGTGGATGGTA : 217883 253 : ysAspAlaThrThrArgGluAlaArgLeuAlaValIle{Va} >>>> Target In : 265 :! !|||!:!! ! !... !!.!:!! !:!!:!!{ } 1202 rgIleAlaSerIleValSerGlnHisValArgIleLeu{Ly}++ 217884 : GAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTA{AA}gt.............. : 217926 266 : tron 1 >>>> {l}ThrArgHisIleArgAla<->LeuLysPheAlaAlaArgVal : 278 bp {!} !!:! .!!||| ...:::||| .!!! !..! ++{s}GluLysAlaPheArgArgTyrPheArgPheLeuThrLeuThr 217927 : ...........ag{G}GAAAAAGCATTTCGACggtatttcagatttttgaCGCTCACA : 219166 279 : GluLysTyrLeuAsnGlyIleCysPheValGluPheIleGlyCysThrMetAsnIleC : 298 |||!:! !|||.!. !|||! !|||!.!||||||:!!||||||||||||:!!|||| GluArgThrLeuGlnGlnIleSerPheAlaGluPheLeuGlyCysThrMetAspIleC 219167 : GAGAGAACCCTCCAGCAAATCTCTTTCGCTGAATTTCTAGGATGCACCATGGACATAT : 219226 299 : ysPheIleGlyTyrTyrCysLeu : 305 ||.!!:!!||||||||| !:!! ysLeuValGlyTyrTyrIleIle 219227 : GTCTCGTTGGATATTACATTATC : 219249 vulgar: NvOr4PSE 174 305 . KQ414889.1 217651 219249 + 189 M 90 270 S 0 2 5 0 2 I 0 1198 3 0 2 S 1 1 M 6 18 G 0 3 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217652 219249 189 + . gene_id 7 ; sequence NvOr4PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217652 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217652 217923 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219125 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219124 219125 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219126 219249 . + . KQ414889.1 exonerate:protein2genome:local exon 219126 219249 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217652 219249 189 + . alignment_id 7 ; Query NvOr4PSE ; Align 217652 175 270 ; Align 219127 266 18 ; Align 219148 272 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 2 -> 143 Target range: 294705 -> 295116 3 : ArgTyrPheLeuArgSerIleGlyLeuTrpSerSerSerSerSerArgSerGlnAlaT : 22 ||| .!.|||!:! !!|||||||||||| !! !! !! !|||!.!!!! ::! ArgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrSerHisThr---SerL 294706 : CGAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACAGTCACACC---AGCA : 294760 23 : yrLeuHisLysPheLeuAsnLeuLeuLeuIleValIleThrTyrLeuLeuIleMetPh : 41 ! |||:!!||| !!|||::::!!:!!||||||!.! ! ||| !:!!:!!|| ysLeuAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLeuThrValLeuPh 294761 : AACTGAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTTGACCGTACTGTT : 294817 42 : eIleLeuValProCysAlaLeuHisThrPheIleGluGluProAsnMetAlaIleLys : 60 |:!!||||||||||||!.!! ! ! ! ! .!!.!.! |||::: :::||| eValLeuValProCysGlyTyrPheCysValPheHisValLysAsnValLysLeuLys 294818 : CGTTTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaacgtgaaattgaaG : 294874 61 : MetLysLeuIleGlyProMetSerPheAlaLeuMetAlaValThrLysTyrAlaSerL : 80 |||||||||:!:||||||:!: !!:!:!!:!!:!::!!:!! !!:!|||::!!!!| MetLysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuArgTyrSerCysL 294875 : ATGAAACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCAGGTACAGCTGTC : 294934 81 : euThrGlnArgThrAlaGluIleAlaGlnCysPheArgHisValGluGluAspTrpGl : 99 ||..! !!:!||| !!! !.!! !!!.|||.!!..! !!:!!|||.!.||||||:! euValLeuLysThrProAlaPheLysHisCysIleGluAspIleGluAsnAspTrpLy 294935 : TAGTTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGAGAACGATTGGAA : 294991 100 : uAsnGlyCysAlaMetGluLysLysArgValValAlaValIleTyrArgHisAlaLys : 118 ! !!!:!!:!!. !..! ! !|||:!!!!: !!:!:!!|||! ! s---------LeuIleAspAsnProGluHisArgAlaIleMetIleLysAsnAlaMet 294992 : G---------TTGATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCGATG : 295039 119 : IleGlyArgSerLeuSerIlePheSerGlyIlePheMetTyrGlyGlyGlyIlePheT : 138 :!! !!:!!!!:!!!!!:!! !! ! !|||.!.!!:|||.!!..!!.!:!:! | ValThrGlnArgMetThrValAlaPheThrIleIleIleTyrSerSerAlaValSerT 295040 : GTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGTCGT : 295099 139 : yrHisGlyIleMetPro : 143 |||||!.!|||:::||| yrHisAlaIleValPro 295100 : ATCACGCCATTGtgcca : 295116 vulgar: NvOr4PSE 2 143 . KQ414889.1 294705 295116 + 180 M 17 51 G 1 0 M 79 237 G 3 0 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294706 295116 180 + . gene_id 8 ; sequence NvOr4PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294706 295116 . + . KQ414889.1 exonerate:protein2genome:local exon 294706 295116 . + . insertions 0 ; deletions 4 KQ414889.1 exonerate:protein2genome:local similarity 294706 295116 180 + . alignment_id 8 ; Query NvOr4PSE ; Align 294706 3 51 ; Align 294757 21 237 ; Align 294994 103 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 174 -> 232 Target range: 304602 -> 304776 175 : LeuThrPheProThrTyrAsnAlaTrpLeuAsnIleGluIleSerProIleTyrGluI : 194 |||..!!:!|||||||||!:!|||! !!!:!!:!!:!!! !|||||||||||||||: LeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerProIleTyrGluL 304603 : CTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAAT : 304660 195 : leValTyrLeuLeuGlnCysPheSerGlyPheValLeuAspThrValThrValGlyTh : 213 !:||||||!!!:!!!!.|||.!.!!!|||!:!|||:!! !!:!!:!!|||!.!|||.! euValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAl 304661 : TGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGC : 304717 214 : rCysSerLeuAlaAlaValPheValThrHisThrCysAlaGlnLeuGluLeuValMet : 232 !|||.!!|||||||||:!!|||!.!||||||.!!|||!.!|||:!!!!::!!|||||| aCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMet 304718 : TTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATG : 304774 vulgar: NvOr4PSE 174 232 . KQ414889.1 304602 304776 + 180 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304603 304776 180 + . gene_id 9 ; sequence NvOr4PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304603 304776 . + . KQ414889.1 exonerate:protein2genome:local exon 304603 304776 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304603 304776 180 + . alignment_id 9 ; Query NvOr4PSE ; Align 304603 175 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 172 -> 244 Target range: 285003 -> 285219 173 : ArgIleLeuThrPheProThrTyrAsnAlaTrpLeuAsnIleGluIleSerProIleT : 192 ||| !! !.!!||||||! !|||..!!.! |||:!! ...! !|||||| ! ArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerP 285004 : AGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGT : 285061 193 : yrGluIleValTyrLeuLeuGlnCysPheSerGlyPheValLeuAspThrValThrVa : 211 :!||||||||| ! !!!:!!||||||!!.:!!!.!||||||:!! !!:!!|||||||| heGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrVa 285062 : TCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGT : 285118 212 : lGlyThrCysSerLeuAlaAlaValPheValThrHisThrCysAlaGlnLeuGluLeu : 230 ||||.!!||||||||||||||||||||||||! !|||..!|||!.!|||!!!..!:!! lGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIle 285119 : TGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATA : 285175 231 : ValMetMetLeuIleArgArgTyrIleAspGlyAspValGly : 244 :!!:!!! !:!: !!:! !:!!||||||! !||| LeuValThrLysLeuAspLysLeuValAspGlyValLysGly 285176 : CTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGG : 285219 vulgar: NvOr4PSE 172 244 . KQ414889.1 285003 285219 + 167 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 285004 285219 167 + . gene_id 10 ; sequence NvOr4PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 285004 285219 . + . KQ414889.1 exonerate:protein2genome:local exon 285004 285219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 285004 285219 167 + . alignment_id 10 ; Query NvOr4PSE ; Align 285004 173 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 172 -> 244 Target range: 286006 -> 286222 173 : ArgIleLeuThrPheProThrTyrAsnAlaTrpLeuAsnIleGluIleSerProIleT : 192 ||| !! !.!!||||||! !|||..!!.! |||:!! ...! !|||||| ! ArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerP 286007 : AGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGT : 286064 193 : yrGluIleValTyrLeuLeuGlnCysPheSerGlyPheValLeuAspThrValThrVa : 211 :!||||||||| ! !!!:!!||||||!!.:!!!.!||||||:!! !!:!!|||||||| heGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrVa 286065 : TCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGT : 286121 212 : lGlyThrCysSerLeuAlaAlaValPheValThrHisThrCysAlaGlnLeuGluLeu : 230 ||||.!!||||||||||||||||||||||||! !|||..!|||!.!|||!!!..!:!! lGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIle 286122 : TGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATA : 286178 231 : ValMetMetLeuIleArgArgTyrIleAspGlyAspValGly : 244 :!!:!!! !:!: !!:! !:!!||||||! !||| LeuValThrLysLeuAspLysLeuValAspGlyValLysGly 286179 : CTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGG : 286222 vulgar: NvOr4PSE 172 244 . KQ414889.1 286006 286222 + 167 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286007 286222 167 + . gene_id 11 ; sequence NvOr4PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 286007 286222 . + . KQ414889.1 exonerate:protein2genome:local exon 286007 286222 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286007 286222 167 + . alignment_id 11 ; Query NvOr4PSE ; Align 286007 173 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 334 -> 387 Target range: 301877 -> 302036 335 : CysThrArgValGlySerIleTyrHisThrIleAspTrpTyrAsnLeuProGlyLysS : 354 |||!:!!:!:!!|||||| !! :!! !|||||||||||||||||||||!.!|||! CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysA 301878 : TGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGA : 301935 355 : erAlaSerAspLeuPhePheIleIleAlaValSerArgTyrProAlaLysLeuThrAl : 373 !!|||! !||||||.!!.!.:!!! !!.!:!!|||!:!|||||| !!||||||||||| rgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAl 301936 : GAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGC : 301992 374 : aGlyLysPheValAspLeuArgLeuValThrPheSerAsnVal : 387 |||||||.!.:!!|||||| !||| !|||||||||::!||| aGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301993 : AGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: NvOr4PSE 334 387 . KQ414889.1 301877 302036 + 166 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301878 302036 166 + . gene_id 12 ; sequence NvOr4PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301878 302036 166 + . alignment_id 12 ; Query NvOr4PSE ; Align 301878 335 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 331 -> 401 Target range: 234979 -> 235260 332 : UnkGluGlnCysThrArgValGlySerIleTyrHisThrIleAspTrpTyrAsnLeuP : 351 ...:!!|||||||||!:!||||||..!! ! :!!! !! !!!:||||||...|||| ThrGlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuP 234980 : ACTCAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTAC : 235037 352 : roGlyLysSerAlaSerAspLeuPhePheIleIleAlaValSerArgTyrProAlaLy : 370 || !|||!!!||| !! !||| ! .!.||||||:!! !|||!!! ! !|| roHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLy 235038 : CTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAA : 235094 371 : sLeuThrAlaGlyLysPheValAspLeuArgLeuValThrPheSerAsn >>>> Ta : 387 |:!!|||||||||||||||:!!.!.:!! !:!!!.!||||||.!!:!! sIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAsp++ 235095 : AATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATgt....... : 235147 388 : rget Intron 1 >>>> ValMetLysSerAlaPheThrTyrPheAsnLeuIleAr : 399 71 bp |||.!.|||:!!:!!|||.!!|||||||||:!!||||| ++ValPheLysAlaSerPheAlaTyrPheAsnMetIleAr 235148 : ..................agGTATTTAAGGCGTCTTTCGCCTACTTCAACATGATCCG : 235252 400 : gIleVal : 401 |! !||| gThrVal 235253 : CACAGTT : 235260 vulgar: NvOr4PSE 331 401 . KQ414889.1 234979 235260 + 160 M 55 165 5 0 2 I 0 67 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234980 235260 160 + . gene_id 13 ; sequence NvOr4PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234980 235144 . + . KQ414889.1 exonerate:protein2genome:local exon 234980 235144 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 235145 235146 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 235145 235215 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 235214 235215 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 235216 235260 . + . KQ414889.1 exonerate:protein2genome:local exon 235216 235260 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234980 235260 160 + . alignment_id 13 ; Query NvOr4PSE ; Align 234980 332 165 ; Align 235216 387 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 22 -> 138 Target range: 236918 -> 237257 23 : LeuHisLysPheLeuAsnLeuLeuLeuIleValIleThrTyrLeuLeuIleMetPheI : 42 |||.!.!:! !:!!::!! !:!!|||! !|||||| !||| ! !|||:!:||| LeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheS 236919 : CTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCT : 236976 43 : leLeuValProCysAlaLeuHisThrPheIleGluGluProAsnMetAlaIleLysMe : 61 :!!:!!||||||:!!|||||| !.!.:!:|||:!! !!.!.!. !! |||:! erIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysVa 236977 : CGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGT : 237033 62 : tLysLeuIleGlyProMetSerPheAlaLeuMetAlaValThrLysTyrAlaSerLeu : 80 !|||:!!:!!||| !!:!!||| ! !:!!.!...!:!!! !!..|||.!!! !||| lLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeu 237034 : GAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTG : 237090 81 : ThrGlnArgThrAlaGluIleAlaGlnCysPheArgHisValGluGluAspTrpGluA : 100 !! !||| ! ! ||| !!!.! !|||!.!|||:!!||| ||||||..!! LeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgT 237091 : TTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAA : 237150 101 : snGlyCysAlaMetGluLysLysArgValValAlaValIleTyrArgHisAlaLysIl : 119 .. ! |||||||||... |||!!:! !:!:!!||||||.! hrThrThrArgLysGluLysLysGlu---------ValMetLeuLysTyrAlaLysPh 237151 : CGACGacgagaaaggagaagaaagaa---------gtcATGTTGAAGTACGCGAAATT : 237198 120 : eGlyArgSerLeuSerIlePheSerGlyIlePheMetTyrGlyGlyGlyIlePheTyr : 138 !.!!|||! ! !:!!|||! !!!! !||||||!!::!!|||||| !:!! ||| eSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyr 237199 : TAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATAT : 237255 vulgar: NvOr4PSE 22 138 . KQ414889.1 236918 237257 + 158 M 86 258 G 3 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236919 237257 158 + . gene_id 14 ; sequence NvOr4PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236919 237257 . + . KQ414889.1 exonerate:protein2genome:local exon 236919 237257 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 236919 237257 158 + . alignment_id 14 ; Query NvOr4PSE ; Align 236919 23 258 ; Align 237177 112 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 0 -> 110 Target range: 262861 -> 263185 1 : MetSerArgTyrPheLeuArgSerIleGlyLeuTrpSerSerSerSerSerArgSerG : 20 !!:!:!|||!::.!.|||!:! !!|||||| !||| !! !|||:!!|||! !|||: IleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerAlaSerIleSerA 262862 : ATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAA : 262919 21 : lnAlaTyrLeuHisLysPheLeuAsnLeuLeuLeuIleValIleThrTyrLeuLeuIl : 39 :! :!!.!.::!.!!:!! !!!||||||||||||:!! !|||! !||||| rg------MetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCysLeuIl 262920 : GA------ATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTGTCTCAT : 262970 40 : eMetPheIleLeuValProCysAlaLeuHisThrPheIleGluGluProAsnMetAla : 58 |:!:! !! !:!!:!!|||! ! !||||||! ! !!:!!|||! !|||.!. ! eLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsnPheHis 262971 : ACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAATTTCCAT : 263027 59 : IleLysMetLysLeuIleGlyProMetSerPheAlaLeuMetAlaValThrLysTyrA : 78 !!:|||:!!:!!:!!:!!||||||:!:.!! !!!!:!:!.!:!!! !!!.|||. MetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleAsnTyrT 263028 : ATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCAATTACA : 263087 79 : laSerLeuThrGlnArgThrAlaGluIleAlaGlnCysPheArgHisValGluGluAs : 97 !!!!!||| !! !.!!:! !!!:||| ! ||| ! !:!||||||:!!||||| hrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGlnGluAs 263088 : CCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCAGGAAGA : 263144 98 : pTrpGluAsnGlyCysAlaMetGluLysLysArgValVal : 110 |||| ! !! ! ! !:!!||| ! :!!|||:!!:!! pTrpCysIleValThrArgLeuGluAspGlnArgIleMet 263145 : CTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATG : 263185 vulgar: NvOr4PSE 0 110 . KQ414889.1 262861 263185 + 156 M 20 60 G 2 0 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262862 263185 156 + . gene_id 15 ; sequence NvOr4PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262862 263185 . + . KQ414889.1 exonerate:protein2genome:local exon 262862 263185 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 262862 263185 156 + . alignment_id 15 ; Query NvOr4PSE ; Align 262862 1 60 ; Align 262922 23 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 0 -> 146 Target range: 226942 -> 227365 1 : MetSerArgTyrPheLeuArgSerIleGlyLeuTrpSerSerSerSerSerArgSerG : 20 :!!!:!|||!::.!.|||!:! !!:!!|||:!!||| !!|||||||||!.!. LeuAsnArgTrpLeuLeuLysProLeuGlyIleTrp------ProSerSerArgLysS 226943 : TTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGG------CCGTCGTCGCGCAAAA : 226994 21 : lnAlaTyrLeuHisLysPheLeuAsnLeuLeuLeuIleValIleThrTyrLeuLeuIl : 39 ..:!! :!! !:!! !!!!::!! !|||:!! ! !!:!! !||| !|||!! erSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMe 226995 : GCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGAT : 227051 40 : eMetPheIleLeuValProCysAlaLeuHisThrPheIleGluGluProAsnMetAla : 58 :! ||| |||||| !! !!!.!|||:!!..! !!:!!|||! ! !..! ! tSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyr 227052 : GAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTAC : 227108 59 : IleLysMetLysLeuIleGlyProMetSerPheAlaLeuMetAlaValThrLysTyrA : 78 ! !! !:!!|||:!!|||||||||||||||||| ! !|||:!!:!! !||||||: AsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrS 227109 : AACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACT : 227168 79 : laSerLeuThrGlnArgThrAlaGluIleAlaGlnCysPheArgHisValGluGluAs : 97 !!! !|||||| !.! !! !!!:||| !:!!||| !!..!!..:!!:!! !|| erMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIleLysTrpAs 227169 : CCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGA : 227225 98 : pTrpGluAsnGlyCysAlaMetGluLysLysArgValValAlaValIleTyrArgHis : 116 ||||:!!||| ! ! !:!!||| ! !:!!.!|||:!!!.!..! :!! pTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThr---------Tyr 227226 : CTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACG---------TAC : 227273 117 : AlaLysIleGlyArgSerLeuSerIlePheSerGlyIlePheMetTyrGlyGlyGlyI : 136 ||| ! !||||||!.!|||! !! !.!!!!! !.!!|||:!:!:!...... : AlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheV 227274 : GCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcg : 227333 137 : lePheTyrHisGlyIleMetProMetAlaAla : 146 ::|||:::::: !:!!:!:|||!!: !||| alPhePheTyrIleValValProIleAsnAla 227334 : tatttttctacATCGTCGTACCTATCAACGCC : 227365 vulgar: NvOr4PSE 0 146 . KQ414889.1 226942 227365 + 155 M 12 36 G 2 0 M 98 294 G 3 0 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226943 227365 155 + . gene_id 16 ; sequence NvOr4PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226943 227365 . + . KQ414889.1 exonerate:protein2genome:local exon 226943 227365 . + . insertions 0 ; deletions 5 KQ414889.1 exonerate:protein2genome:local similarity 226943 227365 155 + . alignment_id 16 ; Query NvOr4PSE ; Align 226943 1 36 ; Align 226979 15 294 ; Align 227273 116 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 337 -> 402 Target range: 206251 -> 207607 338 : ValGlySerIleTyrHisThrIleAspTrpTyrAsnLeuProGlyLysSerAlaSerA : 357 ||||||! !! !! ! !|||:!::!!||||||..!||||||..!!:! !||| !!. ValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgS 206252 : GTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCT : 206309 358 : spLeuPhePheIleIleAlaValSerArgTyrProAlaLysLeuThrAlaGlyLysPh : 376 .!:!!.!..!.|||||||||:!!|||!.!|||||| !||||||||||||||||||.! erMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMe 206310 : CTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAAT : 206366 377 : eValAspLeuArgLeuValThrPheSerAsn >>>> Target Intron 1 >>>> : 387 . !!!!::!! !|||!.!!:!|||!!!:!! 1161 bp tPheGluMetSerLeuAlaSerPheThrAsp++ 206367 : GTTCGAAATGTCTTTAGCTAGTTTCACCGATgt......................... : 206401 388 : ValMetLysSerAlaPheThrTyrPheAsnLeuIleArgIleValIle : 402 ||||||||| !|||.!. !|||||||||:!!:!!||| !|||:!! ++ValMetLysValAlaMetGlyTyrPheAsnIleLeuArgGluValVal 206402 : agGTAATGAAGGTGGCGATGGGATACTTCAACATACTCCGTGAAGTCGTA : 207607 vulgar: NvOr4PSE 337 402 . KQ414889.1 206251 207607 + 154 M 49 147 5 0 2 I 0 1157 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206252 207607 154 + . gene_id 17 ; sequence NvOr4PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206252 206398 . + . KQ414889.1 exonerate:protein2genome:local exon 206252 206398 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206399 206400 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206399 207559 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 207558 207559 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 207560 207607 . + . KQ414889.1 exonerate:protein2genome:local exon 207560 207607 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206252 207607 154 + . alignment_id 17 ; Query NvOr4PSE ; Align 206252 338 147 ; Align 207560 387 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 32 -> 144 Target range: 204338 -> 204662 33 : ValIleThrTyrLeuLeuIleMetPheIleLeuValProCysAlaLeuHisThrPheI : 52 |||:!!||||||...|||.........:!::!!|||||| !! !|||:!!..!|||: ValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheL 204339 : GTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCC : 204396 53 : leGluGluProAsnMetAlaIleLysMetLysLeuIleGlyProMetSerPheAlaLe : 71 !::!!||| !||| !|||::::!!|||:!!:!!||||||!!: ! !..! euLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSe 204397 : TGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAG : 204453 72 : uMetAlaValThrLysTyrAlaSerLeuThrGlnArgThrAlaGluIleAlaGlnCys : 90 !!!: ! !! !||||||:!! !:!! ! ! |||! !! !:!!||| !:!! !! rIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSer 204454 : CATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGT : 204510 91 : PheArgHisValGluGluAspTrpGluAsnGlyCysAlaMetGluLysLysArgValV : 110 !!.!.! !:!!..!...|||||| !.!. |||! !!!::!!!!.|||:!! LeuAsnThrIleArgArgAspTrpIleGlu------AlaThrAspGluAsnArgLeu- 204511 : TTGAACACCATCAGACGCGACTGGATAGAG------GCTACGGATGAAAATCGGTTG- : 204564 111 : alAlaValIleTyrArgHisAlaLysIleGlyArgSerLeuSerIlePheSerGlyIl : 129 :!!.!! ! ! ! |||||||||||||||!!!:!!! !:!:.!!:!!!.! -----IlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAl 204565 : -----ATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGC : 204615 130 : ePheMetTyrGlyGlyGlyIlePheTyrHisGlyIleMetProMet : 144 ! !|||||||||||||||:!:! !|||... !|||:!:|||:!! aThrMetTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeu 204616 : CACTATGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTG : 204662 vulgar: NvOr4PSE 32 144 . KQ414889.1 204338 204662 + 138 M 68 204 G 2 0 M 7 21 G 2 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204339 204662 138 + . gene_id 18 ; sequence NvOr4PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204339 204662 . + . KQ414889.1 exonerate:protein2genome:local exon 204339 204662 . + . insertions 0 ; deletions 4 KQ414889.1 exonerate:protein2genome:local similarity 204339 204662 138 + . alignment_id 18 ; Query NvOr4PSE ; Align 204339 33 204 ; Align 204543 103 21 ; Align 204564 112 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 153 -> 240 Target range: 267051 -> 267312 154 : IleAspAsnSerLeuSerLeuAsnThrSerSerValLeuGluValAlaLysLysProA : 173 :!: !..:!!!!!!!!:!!.!.||| !..!||| !.!.! !.!!!:!! !! ValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleValH 267052 : GTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTAC : 267109 174 : rgIleLeuThrPheProThrTyrAsnAlaTrpLeuAsnIleGluIleSerProIleTy : 192 .!:!:||| !!! ! !!..!|||!!. ! !:!! :!!!!:! !||||||! ! isLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrAs 267110 : ATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGAA : 267166 193 : rGluIleValTyrLeuLeuGlnCysPheSerGlyPheValLeuAspThrValThrVal : 211 !||||||||| !:!!! !|||! ! ! |||||||||:!!:!!:!!:!! !..!||| nGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValVal 267167 : CGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGTC : 267223 212 : GlyThrCysSerLeuAlaAlaValPheValThrHisThrCysAlaGlnLeuGluLeuV : 231 |||.!!! !||||||||||||||||||!.!.!!|||.!!|||!.!||||||...:!!: GlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerValL 267224 : GGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGC : 267283 232 : alMetMetLeuIleArgArgTyrIleAsp : 240 !!||||||! !|||!:!..!!:!:!::!! euMetMetTrpIleLysGluPheValAsn 267284 : TGATGATGTGGATCAAGGAGTTTGTGAAC : 267312 vulgar: NvOr4PSE 153 240 . KQ414889.1 267051 267312 + 137 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 267052 267312 137 + . gene_id 19 ; sequence NvOr4PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 267052 267312 . + . KQ414889.1 exonerate:protein2genome:local exon 267052 267312 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 267052 267312 137 + . alignment_id 19 ; Query NvOr4PSE ; Align 267052 154 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 172 -> 241 Target range: 213343 -> 213550 173 : ArgIleLeuThrPheProThrTyrAsnAlaTrpLeuAsnIleGluIleSerProIleT : 192 ||| !:!!..! !!|||..!! !.. ! :!!:!!:!!..! !||||||:!: ArgGlnMetValValProValSerArgPheIleValAspValArgTyrSerProValA 213344 : AGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGA : 213401 193 : yrGluIleValTyrLeuLeuGlnCysPheSerGlyPheValLeuAspThrValThrVa : 211 !!|||||| !!!:!|||:!!||| !.!.:!!||| ! :!!:!! !!.!!:!!.!!|| snGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaVa 213402 : ACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGT : 213458 212 : lGlyThrCysSerLeuAlaAlaValPheValThrHisThrCysAlaGlnLeuGluLeu : 230 |! !.!!|||||||||||||||||||||!.!..!|||.!!|||!.!|||:!!! :!! lValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIle 213459 : GGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATT : 213515 231 : ValMetMetLeuIleArgArgTyrIleAspGly : 241 :!!|||! ! !:!:..!!.!! ||||||||| LeuMetSerTrpLeuGluHisLeuIleAspGly 213516 : TTGATGAGCTGGCTGGAACATTTGATAGACGGT : 213550 vulgar: NvOr4PSE 172 241 . KQ414889.1 213343 213550 + 131 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 213344 213550 131 + . gene_id 20 ; sequence NvOr4PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 213344 213550 . + . KQ414889.1 exonerate:protein2genome:local exon 213344 213550 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 213344 213550 131 + . alignment_id 20 ; Query NvOr4PSE ; Align 213344 173 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 333 -> 387 Target range: 258462 -> 258624 334 : GlnCysThrArgValGlySerIleTyrHisThrIleAspTrpTyrAsnLeuProGlyL : 353 ||||||! !!:!||||||..!:!: !:!!! !! !||||||||| !!||||||! !| GlnCysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspL 258463 : CAGTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACA : 258520 354 : ysSerAlaSerAspLeuPhePheIleIleAlaValSerArgTyrProAlaLysLeuTh : 372 ||!!! ! !||||||.!!!!.:!!|||||| !|||!!! !!.!:!!:!!|| ysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleTh 258521 : AAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCAC : 258577 373 : rAlaGlyLysPheValAspLeuArgLeuValThrPheSerAsnVal : 387 ||||||||||||| ::! !:!! !|||||||||:!!||| rAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAspVal 258578 : CGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATGTG : 258624 vulgar: NvOr4PSE 333 387 . KQ414889.1 258462 258624 + 127 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258463 258624 127 + . gene_id 21 ; sequence NvOr4PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 258463 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258463 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258463 258624 127 + . alignment_id 21 ; Query NvOr4PSE ; Align 258463 334 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 172 -> 230 Target range: 290203 -> 290377 173 : ArgIleLeuThrPheProThrTyrAsnAlaTrpLeuAsnIleGluIleSerProIleT : 192 ||| !||||||!:!||| !|||.!.! !!::!!!:!!:!!:!!! |||||| | ArgProLeuThrTyrProGlyTyrGluGluPhePheAspValGlnLysSerProAlaT 290204 : AGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGT : 290261 193 : yrGluIleValTyrLeuLeuGlnCysPheSerGlyPheValLeuAspThrValThrVa : 211 |||||||||||!:!! !:!!!!.||| !!! !! !.!.:!! !! !.!:!!|||:! yrGluIleValPheCysMetHisCysValTyrValMetIleThrAlaAsnIleThrMe 290262 : ACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACATCACAAT : 290318 212 : lGlyThrCysSerLeuAlaAlaValPheValThrHisThrCysAlaGlnLeuGluLeu : 230 !!.!.!!! !||||||.!!.!!:!!|||!.!||||||||||||!.!|||:!!:!!:!! tAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGlnIleLysIle 290319 : GGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATA : 290375 vulgar: NvOr4PSE 172 230 . KQ414889.1 290203 290377 + 127 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 290204 290377 127 + . gene_id 22 ; sequence NvOr4PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 290204 290377 . + . KQ414889.1 exonerate:protein2genome:local exon 290204 290377 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 290204 290377 127 + . alignment_id 22 ; Query NvOr4PSE ; Align 290204 173 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 333 -> 391 Target range: 297641 -> 297815 334 : GlnCysThrArgValGlySerIleTyrHisThrIleAspTrpTyrAsnLeuProGlyL : 353 |||..! !!:! !!|||!:! ! !:!!!.!|||!!:||||||||||||||| !! GlnAlaGluLysPheGlyAsnAlaAlaTyrAsnIleGluTrpTyrAsnLeuProProA 297642 : CAGGCTGAAAAATTCGGCAATGCAGCTTATAACATCGAATGGTACAACTTACCGCCAA : 297699 354 : ysSerAlaSerAspLeuPhePheIleIleAlaValSerArgTyrProAlaLysLeuTh : 372 !.!!!||| !|||||| ! !!.!!:|||!.!:!!:!!!:!!:!||| !!!:!||||| snArgAlaLeuAspLeuValLeuMetIleGlyIleAlaLysPheProProArgLeuTh 297700 : ACAGGGCTCTCGATCTGGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCAC : 297756 373 : rAlaGlyLysPheValAspLeuArgLeuValThrPheSerAsnValMetLysSerAla : 391 |...||||||... |||::: !:!! !||||||||| !||| !::...::: rGlyGlyLysIlePheAspIleSerIleAsnThrPheSerAlaValArgArgGlnSer 297757 : AggtggaaaaatattcgatatatCGATAAACACGTTCAGTGCCGTACGTAgacaaagt : 297813 vulgar: NvOr4PSE 333 391 . KQ414889.1 297641 297815 + 126 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297642 297815 126 + . gene_id 23 ; sequence NvOr4PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297642 297815 . + . KQ414889.1 exonerate:protein2genome:local exon 297642 297815 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297642 297815 126 + . alignment_id 23 ; Query NvOr4PSE ; Align 297642 334 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 172 -> 240 Target range: 257123 -> 257327 173 : ArgIleLeuThrPheProThrTyrAsnAlaTrpLeuAsnIleGluIleSerProIleT : 192 |||:!:||| !! !! !!..!|||!!. ! !||||||:!!!!: ||||||! ArgValLeuProValThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrA 257124 : CGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGA : 257181 193 : yrGluIleValTyrLeuLeuGlnCysPheSerGlyPheValLeuAspThrValThrVa : 211 !!||||||||| !!!!:!!||| !!::|||..!.!!:!! ! !||| !||||| snGluIleValValPheMetGlnThrTrpSerSerIleIleAlaThrThrSerThrVa 257182 : ACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGT : 257238 212 : lGlyThrCysSerLeuAlaAlaValPheValThrHisThrCysAlaGlnLeuGluLeu : 230 |.!!! !! !||||||||||||||||||!.!||||||.!!! !!.!|||||| :!! lSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrVal 257239 : TAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTG : 257295 231 : ValMetMetLeuIleArgArgTyrIleAsp : 240 :!!||| !! !|||! !..!!:!:!::!! LeuMetSerTrpIleThrGluPheValAsn 257296 : CTTATGTCGTGGATAACAGAGTTTGTGAAT : 257327 vulgar: NvOr4PSE 172 240 . KQ414889.1 257123 257327 + 125 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 257124 257327 125 + . gene_id 24 ; sequence NvOr4PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 257124 257327 . + . KQ414889.1 exonerate:protein2genome:local exon 257124 257327 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 257124 257327 125 + . alignment_id 24 ; Query NvOr4PSE ; Align 257124 173 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 333 -> 401 Target range: 292389 -> 292593 334 : GlnCysThrArgValGlySerIleTyrHisThrIleAspTrpTyrAsnLeuProGlyL : 353 ||| !!!:!..!:!!!.! ! !! !:!! !! !!!:||||||||||||||| !!: GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 354 : ysSerAlaSerAspLeuPhePheIleIleAlaValSerArgTyrProAlaLysLeuTh : 372 :!!.!||| !!|||:!! !!.!.:!::!!|||:!!!!!!:!:!!||| !|||||||| rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 373 : rAlaGlyLysPheValAspLeuArgLeuValThrPheSerAsnValMetLysSerAla : 391 ||||||||||.!. !!! !||| !||| !||||||.!! !||| :!!||| ! rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSerLys 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCAAAA : 292561 392 : PheThrTyrPheAsnLeuIleArgIleVal : 401 .!...!! .!.:!!! ! !||||||||| LeuValLeuIleHis***GluArgIleVal 292562 : CTAGTCTTGATACACTAAGAACGTATAGTT : 292593 vulgar: NvOr4PSE 333 401 . KQ414889.1 292389 292593 + 123 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 292593 123 + . gene_id 25 ; sequence NvOr4PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292390 292593 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292593 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 292593 123 + . alignment_id 25 ; Query NvOr4PSE ; Align 292390 334 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 332 -> 393 Target range: 277548 -> 277731 333 : GluGlnCysThrArgValGlySerIleTyrHisThrIleAspTrpTyrAsnLeuProG : 352 ..!||||||! !!:!||||||..!:!: !:!!! !! :!!|||||| !!||||||! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 353 : lyLysSerAlaSerAspLeuPhePheIleIleAlaValSerArgTyrProAlaLysLe : 371 !|||..! ! !:!!|||.!!.!!||||||:!! !|||!!! |||:: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 372 : uThrAlaGlyLysPheValAspLeuArgLeuValThrPheSerAsnValMetLysSer : 390 :||||||||||||...:::...::: !:!! !||||||.!!:!!||| ..! ! eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspValArgSerLeu 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTACGTTCACTT : 277720 391 : AlaPheThr : 393 !|||||| LeuPheThr 277721 : CTTTTTACA : 277731 vulgar: NvOr4PSE 332 393 . KQ414889.1 277548 277731 + 120 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277731 120 + . gene_id 26 ; sequence NvOr4PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277549 277731 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277731 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277731 120 + . alignment_id 26 ; Query NvOr4PSE ; Align 277549 333 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 333 -> 390 Target range: 238625 -> 238796 334 : GlnCysThrArgValGlySerIleTyrHisThrIleAspTrpTyrAsnLeuProGlyL : 353 |||||| !!:!||||||..!:!: !:!!! !! !||||||||| !!|||||| !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 354 : ysSerAlaSerAspLeuPhePheIleIleAlaValSerArgTyrProAlaLysLeuTh : 372 :!!!! ! !||||||.!!.!.|||||| ! !|||!.! !!.!|||:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 373 : rAlaGlyLysPheValAspLeuArgLeuValThrPheSerAsnValMetLysSer : 390 |||||||||| ! :!! !!:!! !||| !||||||.!!:!!|||! :!!!!! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThr 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 238796 vulgar: NvOr4PSE 333 390 . KQ414889.1 238625 238796 + 117 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238796 117 + . gene_id 27 ; sequence NvOr4PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238796 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238796 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238796 117 + . alignment_id 27 ; Query NvOr4PSE ; Align 238626 334 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 153 -> 240 Target range: 274797 -> 275058 154 : IleAspAsnSerLeuSerLeuAsnThrSerSerValLeuGluValAlaLysLysProA : 173 :!: !..:!!!!!!!!:!!.!.||| !..!||| !.!.! !.!!!:!! !! ValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrArgThrValH 274798 : GTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGC : 274855 174 : rgIleLeuThrPheProThrTyrAsnAlaTrpLeuAsnIleGluIleSerProIleTy : 192 .!!!:||| !!! ! !.!!|||!!. ! :!! :!:!!:! ||||||! ! isMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThrSerProThrAs 274856 : ATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAA : 274912 193 : rGluIleValTyrLeuLeuGlnCysPheSerGlyPheValLeuAspThrValThrVal : 211 !||||||||| ! !! !|||! ! ! |||||||||:!!:!!:!!:!! !.!!||| nGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerSerAlaVal 274913 : CGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTC : 274969 212 : GlyThrCysSerLeuAlaAlaValPheValThrHisThrCysAlaGlnLeuGluLeuV : 231 |||.!!! !||||||||||||||||||!.!.!!|||.!!! !!.!||||||...:!!: GlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValL 274970 : GGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGC : 275029 232 : alMetMetLeuIleArgArgTyrIleAsp : 240 !!|||!!:! !|||! !..!!:!:!::!! euMetIleTrpIleThrGluPheValAsn 275030 : TGATGATATGGATCACCGAGTTTGTGAAT : 275058 vulgar: NvOr4PSE 153 240 . KQ414889.1 274797 275058 + 115 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274798 275058 115 + . gene_id 28 ; sequence NvOr4PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274798 275058 . + . KQ414889.1 exonerate:protein2genome:local exon 274798 275058 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274798 275058 115 + . alignment_id 28 ; Query NvOr4PSE ; Align 274798 154 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 284 -> 387 Target range: 264579 -> 264885 285 : IleCysPheValGluPheIleGlyCysThrMetAsnIleCysPheIleGlyTyrTyrC : 304 !!: .!.:!!..!.!. !||| !! !.!. !!:|||!:!|||||| ! MetIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGly---GluI 264580 : ATGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGC---GAGA : 264634 305 : ysLeuThrGluTrpGluArgLysGluProIleSerThrThrThrTyrPheIleLeuLe : 323 ||||||||| |||... ||| ..! !:!!.!.|||||| leLeuThrGluGlnValIleLysAsnValIle******Val***HisLeuIleLeuLy 264635 : TATTGACTGAGcaggtaattaaaaatgtaatataataagTTTAACACCTAATTCTAAA : 264691 324 : uAlaProPheThrThrAsnIleLeuUnkGluGlnCysThrArgValGlySerIleTyr : 342 ! ! ! !:!!:::! !:!! !!||||||! !!:!||||||..!:!: ! sTyrAspArg***SerSerSerIlePhe***GlnCysLysLysValGlyGluValVal 264692 : ATATGATCGGTAATCATCGAGCATTTTCTAACAGTGTAAGAAAGTTGGTGAGGTGGTT : 264748 343 : HisThrIleAspTrpTyrAsnLeuProGlyLysSerAlaSerAspLeuPhePheIleI : 362 :!!! ! :!!|||||| !!|||||| !|||..! ! !||||||.!!.!!|||| TyrMetSerAsnTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLeuIleI 264749 : TACATGTCGAATTGGTATTACTTACCCTACAAAGATATCCTTGATCTGATTCTCATCA : 264808 363 : leAlaValSerArgTyrProAlaLysLeuThrAlaGlyLysPheValAspLeuArgLe : 381 || ! !|||!!! ! !|||!!!||||||||||||.!.:!! !!:!! !:! leLeuArgSerSerValValPheLysPheThrAlaGlyLysIleLeuHisMetSerMe 264809 : TTTTAAGATCCAGCGTGGTGTTTAAATTCACCGCTGGAAAGATACTTCACATGTCCAT : 264865 382 : uValThrPheSerAsnVal : 387 ! !|||||||||:!!||| tTyrThrPheSerAspVal 264866 : GTACACATTCAGTGACGTA : 264885 vulgar: NvOr4PSE 284 387 . KQ414889.1 264579 264885 + 112 M 17 51 G 1 0 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264580 264885 112 + . gene_id 29 ; sequence NvOr4PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 264580 264885 . + . KQ414889.1 exonerate:protein2genome:local exon 264580 264885 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 264580 264885 112 + . alignment_id 29 ; Query NvOr4PSE ; Align 264580 285 51 ; Align 264631 303 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 272 -> 306 Target range: 304936 -> 305038 273 : LysPheAlaAlaArgValGluLysTyrLeuAsnGlyIleCysPheValGluPheIleG : 292 !:!|||:!!|||! !|||:!!! ! |||.!.! !:!!||||||:!!|||||||||| ArgPheSerAlaIleValGlnThrValLeuGlnGluValCysPheLeuGluPheIleG 304937 : AGATTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTTCTTGGAATTCATTG : 304994 293 : lyCysThrMetAsnIleCysPheIleGlyTyrTyrCysLeuThr : 306 ||! !|||:!: ||||||.!.:!!! !|||||||||:!!||| lySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysIleThr 304995 : GTTCTACCTTACTGATATGTCTACTTGAATACTACTGTATAACG : 305038 vulgar: NvOr4PSE 272 306 . KQ414889.1 304936 305038 + 102 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304937 305038 102 + . gene_id 30 ; sequence NvOr4PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304937 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304937 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304937 305038 102 + . alignment_id 30 ; Query NvOr4PSE ; Align 304937 273 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 269 -> 305 Target range: 224128 -> 224236 270 : ArgAlaLeuLysPheAlaAlaArgValGluLysTyrLeuAsnGlyIleCysPheValG : 289 !:!..!! !!:!||| !.!!!.!..!|||||| |||.!. !:!!! ||||||| LysCysCysArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValG 224129 : AAATGTTGCAGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGG : 224186 290 : luPheIleGlyCysThrMetAsnIleCysPheIleGlyTyrTyrCysLeu : 305 |||||:!!||||||! !:!!|||||||||.!!:!!||||||||| !:!! luPheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIle 224187 : AATTTCTAGGCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATT : 224236 vulgar: NvOr4PSE 269 305 . KQ414889.1 224128 224236 + 101 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224129 224236 101 + . gene_id 31 ; sequence NvOr4PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224129 224236 . + . KQ414889.1 exonerate:protein2genome:local exon 224129 224236 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224129 224236 101 + . alignment_id 31 ; Query NvOr4PSE ; Align 224129 270 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 270 -> 306 Target range: 234515 -> 234623 271 : AlaLeuLysPheAlaAlaArgValGluLysTyrLeuAsnGlyIleCysPheValGluP : 290 .!!!!!!..||| ! !!.!:!!|||!!. !:!!||| !||||||.!.||||||! ThrPheSerPheIleArgAsnIleGluAsnValMetAsnLeuIleCysLeuValGluL 234516 : ACTTTCAGTTTTATACGGAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGT : 234573 291 : heIleGlyCysThrMetAsnIleCysPheIleGlyTyrTyrCysLeuThr : 306 !.:!!|||||||||:!!|||!!:|||.!.:!!! !||||||! |||||| euValGlyCysThrLeuAsnMetCysMetLeuGluTyrTyrLeuLeuThr 234574 : TGGTAGGATGCACGTTGAACATGTGCATGCTCGAGTATTATTTACTCACG : 234623 vulgar: NvOr4PSE 270 306 . KQ414889.1 234515 234623 + 100 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234516 234623 100 + . gene_id 32 ; sequence NvOr4PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234516 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234516 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234516 234623 100 + . alignment_id 32 ; Query NvOr4PSE ; Align 234516 271 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 32 -> 253 Target range: 236870 -> 237524 33 : ArgPhePheLeuArgLeuLeuGlyThrTrpProAspProTyrGlyAsnValAspSerT : 52 |||!:: :!!!:! !:!!||||||||||||.!. !! ..!|||:!!!!:!!! ArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheSerSerAsnLeuGluArg- 236871 : CGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCTCGTCGAACCTCGAGAGA- : 236928 53 : rpThrThrSerAlaArgCysLeuValIleThrAlaThrMetPheLeuPheAlaThrIl : 71 !.!! !||| !! !! !|||||| ! !||| .!.||||||:!!! !|| --AsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIl 236929 : --AACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAAT : 236982 72 : eSerGlnThrValLysMetAlaLeuSerTyrLysAspLeuAsnLeuValThrGluIle : 90 | !! :!!:!! ! :!: !|||..! ! ! !!!! !! ! !..!:!!||| eProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIle 236983 : CCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATA : 237039 91 : LeuThrAsnCysAsnIleProThrThrIleAlaThrIleLysIleAlaSerIleTrpT : 110 ||| !:::! !:! ! ! !..!.!!..!! !|||!.. !.!!! !:!:! ! LeuGlySerLeuSer---HisTrpValPheCysIleIleSerTyrThrMetLeuLeuL 237040 : CTCGGTTCGTTGAGC---CACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGC : 237096 111 : yrTyrArgTrpValLeuArgAspLeuValArgGlnIleIleGluAspTrpGluMetSe : 129 ||| ..!:!!||| !!!!! !!!.!!!.!!: ||||||..!! !!! euArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrTh 237097 : TGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGAC : 237153 130 : rHisAspArgHisGluSerAlaIleMetTrpArgSerAlaLysIleSerArgIlePhe : 148 ! :::...:::... :::|||! !!:!! !||||||.!!|||||| ! rThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAla 237154 : GacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCG : 237210 149 : SerIleGlyCysMetPheMetThrGluGlyThrLeuLeuThrGlnCysValValGlyL : 168 :!!|||..!|||! !.!!.!.! !.!.||| !:!!||| ! ! ||||||:!! ! AlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrA 237211 : GCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAG : 237270 169 : euPheArgProIleSerTyrAlaPheLysThrAspLeuAsnGlnSerIleGluTrpPr : 187 !! !! ! !!!!: ! !!.! !! !!.! ! !!.. ! ! !! ! !|| laSerThrThrMetValValValValGlyAsnLysThrThrIleLeuArgValLeuPr 237271 : CGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGCGTGCTGCC : 237327 188 : oLeuTyrMetLysGlySerPheProTyrAspValGlnSerSerProAsnTyrGluLeu : 206 |||| ||| ! !.!!.!! ! |||.!.!!!!:! !!! !!!!::!! oLeuProMetTyrLysGlyLeu---LeuProValAspThrAsnThrMetAsnAspIle 237328 : CTTACCAATGTACAAAGGGCTC---CTTCCAGTCGATACGAATACTATGAACGACATC : 237381 207 : SerIleLeuGlyGlnLeuLeuSerAsnValPheAlaSerThrSerPheSerSerAlaA : 226 !:!!|||..!|||!!!||||||... !!.!.|||!:!!.!||| ! !|||!.! ValValLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSerValI 237382 : GTTGTTTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAGTGTTA : 237441 227 : spSerPhePheIleValLeuMetPheHisLeuIleGlyGlnLeuSerIleLeuLysLe : 245 |||.!! ! !!.!|||! ! ||| ! !||||||||||||:!::!!! !|| leSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValValMetLe 237442 : TAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTTATGTT : 237498 246 : uThrIleLeuAspLeuProSerLys : 253 |:!!||| !|||!!! !|||:!! uSerIleGluAspPheValSerGlu 237499 : GTCGATCGAAGATTTTGTGAGTGAA : 237524 vulgar: NvOr13 32 253 . KQ414889.1 236870 237524 + 122 M 19 57 G 1 0 M 43 129 G 1 0 M 98 294 G 1 0 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236871 237524 122 + . gene_id 1 ; sequence NvOr13 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236871 237524 . + . KQ414889.1 exonerate:protein2genome:local exon 236871 237524 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 236871 237524 122 + . alignment_id 1 ; Query NvOr13 ; Align 236871 33 57 ; Align 236928 53 129 ; Align 237057 97 294 ; Align 237351 196 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 32 -> 249 Target range: 274401 -> 275049 33 : ArgPhePheLeuArgLeuLeuGlyThrTrpProAspProTyrGlyAsnValAspSerT : 52 |||!::||||||!:!! !:!!|||.!!|||||| !!! !!.!..! ! ! ! ArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheG 274402 : CGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCG : 274459 53 : rpThrThrSerAlaArgCysLeuValIleThrAlaThrMetPheLeuPheAlaThrIl : 71 !! ! !:!!!.! |||:::... ... ! |||:!!.!!:!!|||:! luArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrVa 274460 : AACGAATCCTTTCACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGT : 274516 72 : eSerGlnThrValLysMetAlaLeuSerTyrLysAspLeuAsnLeuValThrGluIle : 90 !! !! !!:!:!! !:!! ! ! !!: ! !! !:!!! ! !! lIleProSerIlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLys 274517 : TATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAG : 274573 91 : LeuThrAsnCysAsnIleProThrThrIleAlaThrIleLysIleAlaSerIleTrpT : 110 ||| !..! ! ! !! ! ! !|||!.! !|||!!. !.!!!!!:!:! ! LeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuL 274574 : TTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGC : 274633 111 : yrTyrArgTrpValLeuArgAspLeuValArgGlnIleIleGluAspTrpGluMetSe : 129 !!!! ! !:!!|||! !! !|||..!!!.!!: ! !||||||..!!!: euArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleVa 274634 : TACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGT : 274690 130 : rHisAspArgHisGluSerAlaIleMetTrpArgSerAlaLysIleSerArgIlePhe : 148 ! ! ! !.!.!!:..! !:!:|||! !!:!!:!|||||||||.!!||| ! !! lThrArgProGluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrVal 274691 : GACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTC : 274747 149 : SerIleGlyCysMetPheMetThrGluGlyThrLeuLeuThrGlnCysValValGlyL : 168 :!!||| !||| ! .!.! !:!! !! !:!!||| ! ! ||||||:!! ! AlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrA 274748 : GCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAG : 274807 169 : euPheArgProIleSerTyrAlaPheLysThrAspLeuAsnGlnSerIleGluTrpPr : 187 !|||! ! ! !!! ! ! ! !!.!!!: !!.. ! ! !! !|| laPheThrMetGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuPr 274808 : CGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCC : 274864 188 : oLeuTyrMetLysGlySerPheProTyrAspValGlnSerSerProAsnTyrGluLeu : 206 |! ! ! ! !!.!.!! !! |||.!.!!!||||||!.. !!|||:!! oCysLysAlaTyrLysLysIle---ValAlaValAspThrSerProThrAsnGluIle 274865 : GTGTAAAGCTTACAAGAAGATC---GTCGCGGTGGACACGAGTCCGACGAACGAGATC : 274918 207 : SerIleLeuGlyGlnLeuLeuSerAsnValPheAlaSerThrSerPheSerSerAlaA : 226 !:!! !..!|||!!!:!!|||... !!.!!!.!!:!:!!||| !.!!||| ValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaP 274919 : GTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCAT : 274978 227 : spSerPhePheIleValLeuMetPheHisLeuIleGlyGlnLeuSerIleLeuLysLe : 245 !|||.!! ! !|||!!! ! ||| ! !||||||||||||:!:|||! !:! heSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIl 274979 : TCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGAT : 275035 246 : uThrIleLeuAsp : 249 ! !||| !!!: eTrpIleThrGlu 275036 : ATGGATCACCGAG : 275049 vulgar: NvOr13 32 249 . KQ414889.1 274401 275049 + 104 M 162 486 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274402 275049 104 + . gene_id 2 ; sequence NvOr13 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274402 275049 . + . KQ414889.1 exonerate:protein2genome:local exon 274402 275049 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 274402 275049 104 + . alignment_id 2 ; Query NvOr13 ; Align 274402 33 486 ; Align 274888 196 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr13 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 114 -> 285 Target range: 266901 -> 267408 115 : LeuArgAspLeuValArgGlnIleIleGluAspTrpGluMetSerHisAspArgHisG : 134 :!!|||! !! !|||..!!!.!!: ! !||||||..!!!: ! ! ! !.!.! IleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluA 266902 : ATACGCGGTTGCGTAGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGG : 266959 135 : luSerAlaIleMetTrpArgSerAlaLysIleSerArgIlePheSerIleGlyCysMe : 153 !:!.! !:!:|||! !!:!!:!|||!:!|||.!!||| !.!!:!!||| !||| spLysGlnValMetLeuLysAsnAlaArgIleGlyArgTyrIleAlaIlePheCysAl 266960 : ACAAGCAGGTGATGTTGAAGAACGCGAGGATCGGTCGTTACATTGCTATATTCTGCGC : 267016 154 : tPheMetThrGluGlyThrLeuLeuThrGlnCysValValGlyLeuPheArgProIle : 172 ! .!.! !:!! !! !:!!||| ! ! ||||||:!! ! !|||! ! ! aAlaPheMetGlnCysGlyValLeuGlyTyrCysValIleThrAlaPheThrMetGln 267017 : GGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGTGATAACGGCGTTCACTATGCAG : 267073 173 : SerTyrAlaPheLysThrAspLeuAsnGlnSerIleGluTrpProLeuTyrMetLysG : 192 !!! ! ! !! !.!!!: !!.. ! ! !! !|||! ! :!: ! ThrValGluValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaValTyrL 267074 : ACCGTGGAAGTCGGTAACGAGACTAGGATCGTACATCTGTTGCCCTGTGCAGTTTACA : 267133 193 : lySerPheProTyrAspValGlnSerSerProAsnTyrGluLeuSerIleLeuGlyGl : 211 !!.!.!. !! |||.!.!!!||||||!.. !!|||:!! !:!!:!!..!|| ysLysMet---IleAlaValAspThrSerProThrAsnGluIleValLeuValSerGl 267134 : AGAAGATG---ATCGCAGTTGATACCAGCCCGACGAACGAGATTGTCCTTGTTTCACA : 267187 212 : nLeuLeuSerAsnValPheAlaSerThrSerPheSerSerAlaAspSerPhePheIle : 230 |!!!:!!|||... !!.!!!.!!:!:!!||| !! !.!!||| !|||.!! ! ! nPheValSerGlyPheIleValAsnSerSerValValGlyAlaPheSerLeuAlaAla 267188 : GTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCC : 267244 231 : ValLeuMetPheHisLeuIleGlyGlnLeuSerIleLeuLysLeuThrIleLeuAspL : 250 |||!!! ! !||| ! !||||||||||||:!:|||! !:!! !||| !!!:! ValPheAlaAlaHisAlaCysGlyGlnLeuSerValLeuMetMetTrpIleLysGluP 267245 : GTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTGATGATGTGGATCAAGGAGT : 267304 251 : euProSerLysIleGluAsnSerAspAspArgSerLysPheIleAspArgPheAlaPh : 269 !! !!:!::! !..!:!!|||:!! ! !.! ! ||| |||!:!.!!!.! ! heValAsnArgSerArgAspSerAsnLysAsnValCysPhe---AspLysIleGlyVa 267305 : TTGTGAACCGATCCAGAGATAGCAATAAGAACGTTTGCTTC---GATAAGATTGGCGT : 267358 270 : eValHisMetArgHisAsnArgLeuTrpArgPheSerMetAlaIleGlu : 285 ||| ! !.!||| |||:!!! !|||! .!!:!!..!:!!:!! lValValGluHisHisLeuArgValLeuArg***GlyLeuCysLeuLys 267359 : GGTCGTTGAACATCATCTGAGAGTTTTGAGGTAAGGATTGTGTCTCAAG : 267408 vulgar: NvOr13 114 285 . KQ414889.1 266901 267408 + 103 M 80 240 G 1 0 M 68 204 G 1 0 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266902 267408 103 + . gene_id 3 ; sequence NvOr13 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266902 267408 . + . KQ414889.1 exonerate:protein2genome:local exon 266902 267408 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 266902 267408 103 + . alignment_id 3 ; Query NvOr13 ; Align 266902 115 240 ; Align 267142 196 204 ; Align 267346 265 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 521 Query range: 10 -> 402 Target range: 217129 -> 219797 11 : AsnGluAspAsnLysGlnAsnLeuGluArgAsnGlnGlyPheAspTyrAlaValGlnL : 30 .!.:!!..! !!:! :!!! !||| ...:::......::: ::!:!!|||! GluGlnSerProArgThrAspTyrGluTyrGluLysAsnIleAsnLeuSerIleGlnT 217130 : GAACAATCCCCCAGAACCGACTACGAgtacgagaaaaatataaatctcaGTATCCAAT : 217187 31 : euThrArgLeuLeuLeuMetProCysGlyIleTrpPro<->AlaLysPheSerSerAr : 48 !!.!|||! !||||||! ||| |||:!!|||||| :!!::: !!!!!!!|| rpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnSerArgThrThrThrAr 217188 : GGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACTCACGTACCACCACCAG : 217244 49 : gValGlnArgPheLeuArgProPheLeuIleValAlaCysCysPheValMetLeuPhe : 67 | !!:!!:!.!!||| ! !.!.:!!! !!.! !|||! ! !:!!!!: !||| gSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSerPhe 217245 : ATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTACGGTTTGATAAGCTTT : 217301 68 : LeuLeuValProValCysLeuPheMetPheLeuIleValArgAspValArgIleArgI : 87 |||!!!|||||| !! !:!!!:!:!!|||||| !|||..!|||:!! ! !!:!: LeuPheValProCysSerMetTyrValPheLeuGluValGluAspLeuTyrAspLysL 217302 : CTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGT : 217361 88 : leLysLeuLeuGlyProLeuGlyPheSerLeuMetSerLeuPheLysTyrAlaValVa : 106 !:||||||!!!||||||||| !|||!!!:!!|||:!!!!! !!|||||| ! !:! euLysLeuPheGlyProLeuIlePheCysValMetAlaPheValLysTyrTyrSerLe 217362 : TGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCT : 217418 107 : lIleIleArgSerArgGluIleGluLysCysIleGlnAsnMetLeuAspAspTrpGln : 125 !|||:!!!.!!.! !!!:|||...:!!|||:!:::!!..!!: ! ||||||::! uIleValHisLysAlaAspIleArgGluCysValArgArgIleGluArgAspTrpArg 217419 : GATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGG : 217475 126 : GlnValAlaSerAspGluAspArgAspThrMetPheGluAsnAlaArgThrGlyArgV : 145 .!.||| !!!!!!::!!||||||!!:.!!|||.!.! !||||||!.! !|||||| AsnValArgCysGluLysAspArgGluAlaMetIleValAsnAlaAsnPheGlyArgL 217476 : AATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTA : 217535 146 : alLeuThrMetValCysMetPheLeuMetTyrGlyGlyGlyMetProTyrValThrIl : 164 !|||..!:!::!!|||! |||!!!||||||.!!||| ::: ||| ! ysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheValPheTyrTyrIleAl 217536 : AATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcgttttttattacatCGC : 217592 165 : eValProLeuAlaLysGlyAlaThrMetVal<-><->GlyAsnValSerTyrArgAla : 181 !:!!|||:!!::! !||| !! !:!: ! ||||||:!!!!!!:!! ! !! aIleProIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuThrPheIlePro 217593 : TATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCG : 217649 182 : LeuAlaTyrProSerTyrPheIlePhePheAsnProTyrIleArgProValTyrAspV : 201 |||!.!!:!|||! ! !.!!.!!:!! !! ! !! !|||..! !!!!:: LeuValPheProPheThrLysTyrIleIleAspThrArgTyrThrProThrAsnGluI 217650 : TTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCTACGAACGAAA : 217709 202 : alValPheLeuThrGlnCysLeuCysGlyPheThrArgTyrThrIleThrCysGlyVa : 220 !!||||||!!! !|||! :!!..!||| ! !! !:!! !||||||! !.!!. leValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAl 217710 : TTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGC : 217766 221 : lTyrSerValValIleIleCysValMetHisIleCysSerArgIleThrValThrSer : 239 !! !|||:!!!.! ! !! !!.!:!:||| !|||.!!!:!||| !||| !! ! aCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGluValLeuMet 217767 : TTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATG : 217823 240 : SerMetLeuGlnArgLeuAlaAsp{A} >>>> Target Intron 1 >>>> {s : 248 !:! !||||||!.!||| !|||{ } 1244 bp { AsnTrpLeuGlnHisLeuIleAsp{V}++ +-{a 217824 : AACTGGCTGCAACATTTAATCGAC{G}gt.........................at{T : 219095 249 : n}TyrAspAsnLysLeuMetGlyThrVal<->ValLysHisHisLeuLysPheLeuAs : 266 }!:!! !:::! !! !:!:||| ! !! ! !||| !! !::::::..... l}PheValSerThrTyrLeuGlyTrpPheArgGluLysAlaPheArgArgTyrPheAr 219096 : A}TTCGTTTCAACATATCTTGGGTGGTTCAGGGAAAAAGCATTTCGACggtatttcag : 219151 267 : nPheAlaAlaLysLeuAspAsnIlePheArgGluIlePheLeuValGluValMetGly : 285 .||| .!! !!!:!..! !.!!!:!:!!|||! !!!!!.!||| !!:!:||| gPheLeuThrLeuThrGluArgThrLeuGlnGlnIleSerPheAlaGluPheLeuGly 219152 : atttttgaCGCTCACAGAGAGAACCCTCCAGCAAATCTCTTTCGCTGAATTTCTAGGA : 219208 286 : SerThrGlyValIleCysLeuLeuGlyTyrTyrPheIleThr >>>> Target In : 300 !!!||| !! !|||||||||:!!|||||||||.!!|||..! 76 b CysThrMetAspIleCysLeuValGlyTyrTyrIleIleVal++ 219209 : TGCACCATGGACATATGTCTCGTTGGATATTACATTATCGTGgt.............. : 219255 301 : tron 2 >>>> GluTyrGluGlnArgGluSerIleAlaThrIleThrTyrPhePhe : 314 p |||!:::!!..!!.!!!: !! ::!.!!:!:||||||.!!.!! ++GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIle 219256 : ...........agGAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATT : 219371 315 : LeuLeuMetSerPheValPheAsnIlePheIleLeuCysTyrIleGlyGlnValLeuT : 334 ||||||!!:|||.!....|||||||||||||||...||||||||||||:!!:!!:!!. LeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValA 219372 : CTACTTATATCCCTcactttcaacattttcatattttgctaCATAGGAGAGATCGTTG : 219431 335 : hrGluLys >>>> Target Intron 3 >>>> CysGluSerIleAlaLysAla : 343 !!|||:!: 73 bp |||......|||...::: laGluGln++ ++CysArgLysIleGlyGluMet 219432 : CTGAACAggt.........................agTGtaggaaaattggagaaatg : 219531 344 : AlaTyrThrThrLysTrpTyrGlnLeuThrGlyLysGluAlaArgSerIleValPheI : 363 :!!|||! !! !:!!||||||!:!||||||||||||:!! !! !!!!! !|||!!.! SerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuT 219532 : tCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGA : 219591 364 : leValSerCysAsnHisArgProValGluLeuThrAlaGlyLysLeuLeuLysLeuSe : 382 !:!!:!! ::::!! ! !!:!!:!!||||||||||||!!.:!!:!!:!!||||| hrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSe 219592 : CAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTC : 219648 383 : rLeuAsnSerPheSerSer >>>> Target Intron 4 >>>> IleIleLysA : 392 |:!!!:!!!!|||!!!..! 87 bp :!!:!!|||. rIleSerThrPheThrAsp++ ++ValValLysT 219649 : TATCAGCACTTTTACCGACgt.........................agGTCGTTAAGA : 219765 393 : laAlaAlaGlyTyrLeuAsnIleLeuArgThr : 402 !!|||!.! !!:!||||||:!!||||||||| hrAlaValThrPheLeuAsnValLeuArgThr 219766 : CTGCAGTCACGTTTCTGAATGTACTACGAACA : 219797 vulgar: NvOr7 10 402 . KQ414889.1 217129 219797 + 521 M 32 96 G 0 3 M 132 396 G 0 6 M 73 219 S 0 1 5 0 2 I 0 1240 3 0 2 S 1 2 M 9 27 G 0 3 M 42 126 5 0 2 I 0 72 3 0 2 M 37 111 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 83 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217130 219797 521 + . gene_id 1 ; sequence NvOr7 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217130 217850 . + . KQ414889.1 exonerate:protein2genome:local exon 217130 217850 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217851 217852 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217851 219094 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219093 219094 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 219095 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219095 219252 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219668 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219668 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219669 219670 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219669 219755 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 219754 219755 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219756 219797 . + . KQ414889.1 exonerate:protein2genome:local exon 219756 219797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217130 219797 521 + . alignment_id 1 ; Query NvOr7 ; Align 217130 11 96 ; Align 217229 43 396 ; Align 217631 175 219 ; Align 219097 249 27 ; Align 219127 258 126 ; Align 219329 300 111 ; Align 219513 337 156 ; Align 219756 389 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 378 Query range: 24 -> 341 Target range: 259769 -> 261859 25 : AspTyrAlaValGlnLeuThrArgLeuLeuLeuMetProCysGlyIleTrpProAlaL : 44 ||||||::!:!!|||!!!!.!|||! !!!!|||! ||| ||| !|||||| !!. AspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProS 259770 : GACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTT : 259827 45 : ysPheSer<->SerArgValGlnArgPheLeuArgProPheLeuIleValAlaCysCy : 62 .!! !||| !!!|||:!!:!!!:!.!!:!! ! !.!!|||||| !! !|||! erSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTy 259828 : CATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTA : 259884 63 : sPheValMetLeuPheLeuLeuValProValCysLeuPheMetPheLeuIleValArg : 81 ! !..!!!:||| !! !|||:!!||| ! ||| !|||.!.||| !..! rSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGlu 259885 : CAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAG : 259941 82 : AspValArgIleArgIleLysLeuLeuGlyProLeuGlyPheSerLeuMetSerLeuP : 101 ..!:!! !!!:!:!! |||:!!|||||||||||| ! !!!!!!!:!:.!!! !. SerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysI 259942 : AGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTA : 260001 102 : heLysTyrAlaValValIleIleArgSerArgGluIleGluLysCysIleGlnAsnMe : 120 !!!!.|||.!!..!:!!:!::!:|||.!!|||!!:||| !..|||:!::!!:!!:! leAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisVa 260002 : TTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGT : 260058 121 : tLeuAspAspTrpGlnGlnValAlaSerAspGluAspArgAspThrMetPheGluAsn : 139 ! !:!!||||||::! :!!.!!!!!!!::!!|||!:!:!!..!|||!!...! !! lGluAsnAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyr 260059 : GGAGAACGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATAC : 260115 140 : AlaArgThrGlyArgValLeuThrMetValCysMetPheLeuMetTyrGlyGlyGlyM : 159 |||!:! !|||||| !:!!.!! !||| ! !!!!:!! ! ||||||! !: AlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValL 260116 : GCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTC : 260175 160 : etProTyrValThrIleValProLeuAlaLysGlyAlaThrMetValGlyAsnValSe : 178 !! !!:! ! !:!!..! !|||::!! !! !!.!! !...|||||||||! !!! euCysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluTh 260176 : TGTGCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGAC : 260232 179 : r<-><->TyrArgAlaLeuAlaTyrProSerTyrPheIlePhePheAsnProTyrIle : 195 ! !!.! !||| !!! ! !! !||| .!..!.||| ! !! ! rArgIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAsp 260233 : GAGGATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGAC : 260289 196 : ArgProValTyrAspValValPheLeuThrGlnCysLeuCysGlyPheThrArgTyrT : 215 !!!|||:!! !!!!::!!|||.!!:!!..!|||! !:!!! ||||||! ! ! !!: SerProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnS 260290 : AGTCCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATT : 260349 216 : hrIleThrCysGlyValTyrSerValValIleIleCysValMetHisIleCysSerAr : 234 !!! !||| !|||:!!!:!|||:!!!.! !:!! ..! ||| |||.!!!: erSerThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGl 260350 : CGAGCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCA : 260406 235 : gIleThrValThrSerSerMetLeuGlnArgLeuAlaAspAsnTyrAspAsn{L} > : 252 !:!:!.!||| !! !..! !:!! !..!!!!!.!|||.!.! |||{|} nLeuAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsn{L}+- 260407 : GTTGAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAAC{A}gg. : 260463 253 : >>> Target Intron 1 >>>> {ys}LeuMetGlyThrValValLysHisHisL : 262 278 bp {||}!!. ::: !! +-{ys}PheAlaLysIleLeuGlnLeuIleAlaC 260464 : ........................at{AG}TTcgcaaaaattttgcaattaattgCTT : 260768 263 : euLysPheLeuAsnPheAlaAlaLysLeuAspAsnIlePheArgGluIlePheLeuVa : 281 ! !!!.! !!:!||| !:!!::::!!!!::!!:!:.!.!.!..!|||! !!!!:! ys***LeuCysSerPheIleSerArgIleGluAspValMetAsnArgIleCysPheLe 260769 : GTTGATTGTGCAGCTTCATATCGCGTATCGAGGATGTGATGAACCGGATATGCTTCCT : 260825 282 : lGluValMetGlySerThrGlyValIleCysLeuLeuGlyTyrTyrPheIleThr > : 300 !|||:!!.!. !!!!!||| !! !|||||||||||||||||||||.!!:!!! ! uGluLeuPheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeuMet++ 260826 : GGAGTTGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATATTCTTATGgt. : 260884 301 : >>> Target Intron 2 >>>> GluTyrGluGlnArgGluSerIleAlaThrIl : 310 852 bp |||!::! :!!!:!!!:! ! ! ! ! ++GluTrpAlaGluGlnAspIleGlnAsnLeuSe 260885 : ........................agGAATGGGCTGAGCAAGATATACAAAATCTGTC : 261764 311 : eThrTyrPhePheLeuLeuMetSerPheValPheAsnIlePheIleLeuCysTyrIle : 329 !|||||||||.!.:!!|||!!::!!.!! !||||||:!!||||||:!!||||||||| rThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIle 261765 : CACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATC : 261821 330 : GlyGlnValLeuThrGluLysCysGluSerIleAla : 341 |||:!!:!!|||||||||:!! :!! !:!:||| GlyGluIleLeuThrGluGlnValGlnHisLeuAla 261822 : GGTGAAATACTAACGGAACAGGTACAACATTTGGca : 261859 vulgar: NvOr7 24 341 . KQ414889.1 259769 261859 + 378 M 22 66 G 0 3 M 132 396 G 0 6 M 73 219 S 0 1 5 0 2 I 0 274 3 0 2 S 1 2 M 47 141 5 0 2 I 0 848 3 0 2 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259770 261859 378 + . gene_id 2 ; sequence NvOr7 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259770 260460 . + . KQ414889.1 exonerate:protein2genome:local exon 259770 260460 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260461 260462 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local intron 260461 260738 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260737 260738 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 260739 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260739 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261859 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261859 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259770 261859 378 + . alignment_id 2 ; Query NvOr7 ; Align 259770 25 66 ; Align 259839 47 396 ; Align 260241 179 219 ; Align 260741 253 141 ; Align 261734 300 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 347 Query range: 26 -> 245 Target range: 221381 -> 222047 27 : AlaValGlnLeuThrArgLeuLeuLeuMetProCysGlyIleTrpProAlaLysPheS : 46 ::!|||||||||!:!|||! !:!!|||! !||| !|||:!!|||||| !..! !! SerValGlnLeuSerArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaA 221382 : AGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCA : 221439 47 : er<->SerArgValGlnArgPheLeuArgProPheLeuIleValAlaCysCysPheVa : 64 :! |||! !|||:!!|||!:!||| ! !.!.:!!! !|||!.!|||! ! !:! snIleSerThrValGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLe 221440 : ACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCT : 221496 65 : lMetLeuPheLeuLeuValProValCysLeuPheMetPheLeuIleValArgAspVal : 83 !!!: !||||||||||||||| ! !!|||!:!:!!.!!||| !|||..!|||||| uIleThrPheLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspVal 221497 : GATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTC : 221553 84 : ArgIleArgIleLysLeuLeuGlyProLeuGlyPheSerLeuMetSerLeuPheLysT : 103 !! !||||||||||||||||||||||||.!!|||!!!:!!|||:!!!!!.!.|||| TyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysT 221554 : TACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGT : 221613 104 : yrAlaValValIleIleArgSerArgGluIleGluLysCysIleGlnAsnMetLeuAs : 122 || !:!!:!!|||:!! !..!!.!!!:|||...:!!||||||:!!..!!!: ! yrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTr 221614 : ATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATG : 221670 123 : pAspTrpGlnGlnValAlaSerAspGluAspArgAspThrMetPheGluAsnAlaArg : 141 ||||||:!!.!.:!!.!!! !..!:!!|||!:!|||! !|||.!.|||||||||! ! pAspTrpLysAsnIleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIle 221671 : GGATTGGAAGAATATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATT : 221727 142 : ThrGlyArgValLeuThrMetValCysMetPheLeuMetTyrGlyGlyGlyMetProT : 161 !|||||| !|||! !|||:!!|||! |||!!!||||||.!!||| ::: | PheGlyArgArgLeuIleMetIleCysThrPhePheMetTyrSerGlyPheValPheT 221728 : TTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGTACAGTggtttcgtttttt : 221787 162 : yrValThrIleValProLeuAlaLysGlyAlaThrMetValGly<-><->AsnValSe : 178 || ! !:!!|||!!!::! !||| !! ! !.! ! ||||||:: yrTyrIleAlaIleProPheSerValGlyLysIleProAlaGlnAspValAsnValTh 221788 : attacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaac : 221844 179 : rTyrArgAlaLeuAlaTyrProSerTyrPheIlePhePheAsnProTyrIleArgPro : 197 :::: !!:!!!.!!:!|||! !! .!!.!! !!:!! !! !!!!||| rPheIleProMetValPheProPheSerArgPheIleValAspThrArgTyrSerPro 221845 : ttttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCT : 221901 198 : ValTyrAspValValPheLeuThrGlnCysLeuCysGlyPheThrArgTyrThrIleT : 217 ||| !!!!::!!:!!|||! ! !||| !:!!...||| ! !! !:!!!:!|||| ValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleT 221902 : GTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTA : 221961 218 : hrCysGlyValTyrSerValValIleIleCysValMetHisIleCysSerArgIleTh : 236 ||! !.!!.!! !|||:!!||| !!!:! !!.!:!!||| !|||.!!!:!!!: hrSerAlaAlaCysSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMetGl 221962 : CATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCA : 222018 237 : rValThrSerSerMetLeuGlnArgLeu : 245 !||| !! !||| !|||:!!!.!||| nValLeuMetSerTrpLeuLysHisLeu 222019 : AGTGTTGATGAGCTGGCTGAAACATTTG : 222047 vulgar: NvOr7 26 245 . KQ414889.1 221381 222047 + 347 M 20 60 G 0 3 M 129 387 G 0 6 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221382 222047 347 + . gene_id 3 ; sequence NvOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221382 222047 . + . KQ414889.1 exonerate:protein2genome:local exon 221382 222047 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221382 222047 347 + . alignment_id 3 ; Query NvOr7 ; Align 221382 27 60 ; Align 221445 47 387 ; Align 221838 176 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 332 Query range: 25 -> 250 Target range: 204236 -> 204914 26 : TyrAlaValGlnLeuThrArgLeuLeuLeuMetProCysGlyIleTrpProAlaLysP : 45 ||||||..!!::!!!..!!:!! !:!!||| ! ! !||| |||||| ! ! TyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaTrpProIleProV 204237 : TACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGTGGCCGATTCCAG : 204294 46 : he<->SerSerArgValGlnArgPheLeuArgProPheLeuIleValAlaCysCysPh : 63 ! ||||||! ! !! !|||.!.:!!|||! !.!. ! !|||!.! ! || alAsnSerSerProPheThrArgLeuValArgArgIleGluHisValValThrTyrPh 204295 : TGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGTAGTCACCtattt : 204351 64 : eValMetLeuPheLeuLeuValProValCysLeuPheMetPheLeuIleValArgAsp : 82 |:::.........:!!:!!||||||! ! !|||!:!:!!||||||! ! !!:!:!! eLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheLeuLysGluLysAsn 204352 : cctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAGAAC : 204408 83 : ValArgIleArgIleLysLeuLeuGlyProLeuGlyPheSerLeuMetSerLeuPheL : 102 ! !!:!||||||:!:|||:!!|||||||||:!!! ! !!!! !!!:..!!!!|||| GlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSerIleGlnPhePheL 204409 : GGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCATACAGTTCTTCA : 204468 103 : ysTyrAlaValValIleIleArgSerArgGluIleGluLysCysIleGlnAsnMetLe : 121 |||||:!!|||:!!:!! !|||! ! !:!!|||:!!||| !!:!:.!.!.!!!: ysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSerLeuAsnThrIleAr 204469 : AGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGTTTGAACACCATCAG : 204525 122 : uAspAspTrpGlnGlnValAlaSerAspGluAspArgAspThrMetPheGluAsnAla : 140 ! !|||||| !:!! |||!!!||||||:!!||| ! !.!. !..!!!.||| gArgAspTrpIleGlu---AlaThrAspGluAsnArgLeuIlePheArgSerLysAla 204526 : ACGCGACTGGATAGAG---GCTACGGATGAAAATCGGTTGATTTTCCGCTCGAAAGCG : 204579 141 : ArgThrGlyArgValLeuThrMetValCysMetPheLeuMetTyrGlyGlyGlyMetP : 160 !:!! !|||||| !:!! !:!!:!!... ! !|||||||||||||||:!! LysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetTyrGlyGlyGlyLeuC 204580 : AAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGTACGGCGGTGGTTTGT : 204639 161 : roTyrValThrIleValProLeuAlaLysGlyAlaThrMetVal<->GlyAsnValSe : 178 !||| !||||||:!!|||||| !!:!|||.!!! !:!:..! ! !||||||!! ysTyrArgThrIleLeuProLeuLeuArgGlyThrIleValThrProAspAsnValTh 204640 : GTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTAACACCTGATAACGTTAC : 204696 179 : rTyrArgAlaLeuAlaTyrProSerTyrPheIlePhePheAsnProTyrIleArgPro : 197 ! ||| !!||| !!! !||| !||||||:::||||||||| ! ! ! !||| rIleArgProLeuProCysProValTyrPheValPhePheAsnGluGlnArgSerPro 204697 : CATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaacGAGCAACGTTCGCCG : 204753 198 : ValTyrAspValValPheLeuThrGlnCysLeuCysGlyPheThrArgTyrThrIleT : 217 !|||!!::!!||||||:!! !||| !:!!..!||||||..!! !|||.!!:!!! AsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheValThrTyrAlaValI 204754 : AATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTGTTACTTACGCTGTTA : 204813 218 : hrCysGlyValTyrSerValValIleIleCysValMetHisIleCysSerArgIleTh : 236 ! !!|||..!! !.!!:!! ! :!:! !|||:!:||| ||||||! !:!:! leSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAlaCysSerMetLeuAr 204814 : TCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGCGTGCAGCATGCTGAG : 204870 237 : rValThrSerSerMetLeuGlnArgLeuAlaAspAsnTyrAsp : 250 !:!! ! !!:!! !:!!.!. !|||!.!|||!!. ||| gIleLeuValAsnLysMetAsnAlaLeuValAspLysAlaAsp 204871 : GATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCGGAC : 204914 vulgar: NvOr7 25 250 . KQ414889.1 204236 204914 + 332 M 20 60 G 0 3 M 81 243 G 1 0 M 47 141 G 0 3 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204237 204914 332 + . gene_id 4 ; sequence NvOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204237 204914 . + . KQ414889.1 exonerate:protein2genome:local exon 204237 204914 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 204237 204914 332 + . alignment_id 4 ; Query NvOr7 ; Align 204237 26 60 ; Align 204300 46 243 ; Align 204543 128 141 ; Align 204687 175 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 328 Query range: 25 -> 247 Target range: 284523 -> 285207 26 : TyrAlaValGlnLeuThrArgLeuLeuLeuMetProCysGlyIleTrpProAlaLysP : 45 |||::!||||||:!!!.!|||! !!!!|||! ||| !|||:!!|||||| !!... TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 46 : heSer<->SerArgValGlnArgPheLeuArgProPheLeuIleValAlaCysCysPh : 63 !!!!! !!!! !:!!:!!!:!.!! ! ! ! !!||| :!! ! !!||||| euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 64 : eValMetLeuPheLeuLeuValProValCysLeuPheMetPheLeu<->IleValArg : 81 |:!!!!: !||||||||||||||| !..!|||! !! ! ||| ! !..! !! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 82 : AspValArgIleArgIleLysLeuLeuGlyProLeuGlyPheSerLeuMetSerLeuP : 101 |||:!! !! !:!||||||:!!:!!|||||||||.!!|||!!!:!!|||:!! !. AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 102 : heLysTyrAlaValValIleIleArgSerArgGluIleGluLysCysIleGlnAsnMe : 120 !!|||||| !:!!:!!||| |||.!! !!:!!|||! :!!|||:!::!!:!!!! leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 121 : tLeuAspAspTrpGlnGlnValAlaSer<-><-><->AspGluAspArgAspThrMet : 136 :! !! ||||||...! ..! !||| :::|||:::|||::: ||| eArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMet 284813 : TCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTG : 284869 137 : PheGluAsnAlaArgThrGlyArgValLeuThrMetValCysMetPheLeuMetTyrG : 156 !!:!:!||||||! !|||||| !|||.!!!!: !!||| !!!!||||||. ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrS 284870 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATT : 284929 157 : lyGlyGlyMetProTyrValThrIleValProLeuAlaLysGlyAlaThr<->MetVa : 174 .!||||||.!. !|||..!|||:!::!!||||||..!! !! ! !||| !!::! erGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIl 284930 : CCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCAT : 284986 175 : lGlyAsnValSerTyrArgAlaLeuAlaTyrProSerTyrPheIlePhePheAsnPro : 193 !! !|||! !!!! |||:!!! !|||!:!|||! !||| ! !.!!.!!:!!||| eAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 284987 : CGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCG : 285043 194 : TyrIleArgProValTyrAspValValPheLeuThrGlnCysLeuCysGlyPheThrA : 213 !! !!!!||| !!:!!!::!!||| !!!! !|||||||||..!!.!|||..!! ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValI 285044 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTA : 285103 214 : rgTyrThrIleThrCysGlyValTyrSerValValIleIleCysValMetHisIleCy : 232 !|||:!!:!!||| !|||!.!! !|||:!!!.! !:!:! !|||||||||:!!|| leTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCy 285104 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTG : 285160 233 : sSerArgIleThrValThrSerSerMetLeuGlnArgLeuAlaAsp : 247 |.!!!:!.!!! !:!! ! !!!!! !|||.!.!:!|||!.!||| sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAsp 285161 : TGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGAC : 285207 vulgar: NvOr7 25 247 . KQ414889.1 284523 285207 + 328 M 21 63 G 0 3 M 32 96 G 0 3 M 51 153 G 0 9 M 43 129 G 0 3 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 285207 328 + . gene_id 5 ; sequence NvOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284524 285207 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 285207 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284524 285207 328 + . alignment_id 5 ; Query NvOr7 ; Align 284524 26 63 ; Align 284590 47 96 ; Align 284689 79 153 ; Align 284851 130 129 ; Align 284983 173 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 316 Query range: 20 -> 247 Target range: 278561 -> 279260 21 : AsnGlnGlyPheAspTyrAlaValGlnLeuThrArgLeuLeuLeuMetProCysGlyI : 40 ||| !! !!:: |||::!||||||:!!!.!|||! !!!!|||! ||| !|||: AsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyV 278562 : AACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCG : 278619 41 : leTrpProAlaLysPheSer<->SerArgValGlnArgPheLeuArgProPheLeuIl : 58 !!|||||| !!...!!!!! !!!! !:!!:!!!:!.!! ! ! ! !!||| alTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAl 278620 : TATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGC : 278676 59 : eValAlaCysCysPheValMetLeuPheLeuLeuValProValCysLeuPheMetPhe : 77 :!! ! !!||||||:!!!!: !||||||||||||||| !..!|||! !! ! aLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrVal 278677 : GTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTG : 278733 78 : Leu<->IleValArgAspValArgIleArgIleLysLeuLeuGlyProLeuGlyPheS : 96 ||| ! !..! !!|||:!! !! !:!||||||:!!:!!|||||||||.!!|||! LeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheC 278734 : CTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCT : 278793 97 : erLeuMetSerLeuPheLysTyrAlaValValIleIleArgSerArgGluIleGluLy : 115 !! !|||:!! !.!!|||||| !:!!:!!!!: |||.!! !!:!!|||! || ysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLy 278794 : GCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAA : 278850 116 : sCysIleGlnAsnMetLeuAspAspTrpGlnGlnValAlaSer<-><-><->AspGlu : 131 ||||:!:.!.:!!!!:! ! ||||||...! ..! !||| :::||| sCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGlu 278851 : ATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagag : 278907 132 : AspArgAspThrMetPheGluAsnAlaArgThrGlyArgValLeuThrMetValCysM : 151 :::|||::: ||| !!:!:!||||||! !|||||| !|||.!!!!: !! !! GluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerA 278908 : gagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCG : 278967 152 : etPheLeuMetTyrGlyGlyGlyMetProTyrValThrIleValProLeu<->AlaLy : 169 !!!!||||||..!||||||:!: !|||..!.!!:!::!!|||||| ||| laGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaVa 278968 : CCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGT : 279024 170 : sGlyAlaThrMetValGlyAsnValSerTyrArgAlaLeuAlaTyrProSerTyrPhe : 188 ! !!.!! !!!::!!! !|||! !!!! |||:!!! !|||!:!|||! !||| ! lArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArg 279025 : ACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGC : 279081 189 : IlePhePheAsnProTyrIleArgProValTyrAspValValPheLeuThrGlnCysL : 208 !.!!.!!:!!||| !! !!!!||| !!:!!!::!!||| !!!! !||||||| GlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysL 279082 : GGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCT : 279141 209 : euCysGlyPheThrArgTyrThrIleThrCysGlyValTyrSerValValIleIleCy : 227 ||..!!.!|||..! !|||:!!:!!||| !|||!.!! !|||:!!:!! !:!:! euAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPh 279142 : TGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTT : 279198 228 : sValMetHisIleCysSerArgIleThrValThrSerSerMetLeuGlnArgLeuAla : 246 !|||||||||:!!|||.!!!:!.!!! !:!! ! !!!!! !|||.!.!:!||| ! eValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIle 279199 : CGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATC : 279255 247 : Asp : 247 ||| Asp 279256 : GAC : 279260 vulgar: NvOr7 20 247 . KQ414889.1 278561 279260 + 316 M 26 78 G 0 3 M 32 96 G 0 3 M 51 153 G 0 9 M 38 114 G 0 3 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278562 279260 316 + . gene_id 6 ; sequence NvOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278562 279260 . + . KQ414889.1 exonerate:protein2genome:local exon 278562 279260 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278562 279260 316 + . alignment_id 6 ; Query NvOr7 ; Align 278562 21 78 ; Align 278643 47 96 ; Align 278742 79 153 ; Align 278904 130 114 ; Align 279021 168 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 303 Query range: 10 -> 246 Target range: 194126 -> 194834 11 : AsnGluAspAsnLysGlnAsnLeuGluArgAsnGlnGlyPheAspTyrAlaValGlnL : 30 ...:::...||| ! !::|||:!!.!. !!!. !! ! !!!:|||||||||!:!: LysLysSerAsnTyrArgAsnValAsnTyrLysLeuAspThrGluTyrAlaValArgV 194127 : aagaaatcgAATTACCGCAACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAG : 194184 31 : euThrArgLeuLeuLeuMetProCysGlyIleTrpProAlaLysPheSerSerArgVa : 49 !!.!!!:! !||||||! ||| !|||||||||||| !:!! !||| !|||! alAlaLysAlaLeuLeuThrProIleGlyIleTrpProArgGluAspSerLeuArgAs 194185 : TAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAAGGGAGGATTCTCTTCGCGA : 194241 50 : lGlnArgPheLeuArgProPheLeuIleValAlaCysCysPheValMetLeuPheLeu : 68 !::! ! ||| ! !! ! !|||!.!! !..! :!!|||! !|||||| pArgValArgLeuPheAlaGlnThrGlyValValPheAla---LeuMetCysPheLeu 194242 : CAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTTCGCT---TTGATGTGCTTTCTA : 194295 69 : LeuValProValCysLeuPheMetPheLeuIleValArgAspValArgIleArgIleL : 88 ||||||||| ! :!!!:!! !:!!!! ! !..!|||:!!! !! !!!:| LeuValProHisValIleTyrThrTyrPheAspCysGluAspLeuThrArgTyrMetL 194296 : CTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAGGATCTGACGAGGTACATGA : 194355 89 : ysLeuLeuGlyProLeuGlyPheSerLeuMetSerLeuPheLysTyrAlaValValIl : 107 ||:!!:!!!.! !!! !! !|||||||||:!!:!!:!!.!!|||!:! !..!:!!|| ysValIleAlaAlaGlnValPheSerLeuLeuAlaIleIleLysPheTrpThrMetIl 194356 : AGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGAT : 194412 108 : eIleArgSerArgGluIleGluLysCysIleGlnAsnMetLeuAspAspTrpGlnGln : 126 |:!:!.!!!!!:!||||||..! |||:!:! !.!.||| ! .!.!::::!.!. eValAsnArgLysGluIleArgPheCysLeuLeuGluMetGluThrGlnTyrArgAsp 194413 : CGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGAC : 194469 127 : ValAlaSerAspGluAspArgAspThrMetPheGluAsnAlaArgThrGlyArgValL : 146 |||! !!!!!!:|||||||||.!...!||| .!. !|||!:!! !|||||| !!! ValGluCysGluGluAspArgGlnValMetThrAsnCysAlaLysIleGlyArgPheP 194470 : GTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTT : 194529 147 : euThrMetValCysMetPheLeuMetTyrGlyGlyGlyMetProTyrValThrIleVa : 165 !!|||! :!!! !:!! ||| |||||||||!.!:!!|||||| !! !|||:! heThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLe 194530 : TTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCT : 194586 166 : lProLeu<->AlaLysGlyAlaThrMetValGlyAsnValSerTyrArgAlaLeuAla : 183 !|||||| :!!:!! !! !..!! !! !! !||| !!!! ! ! ! !!||| !! uProLeuMetSerGluArgIleValLysGluAspAsnSerThrGlnIleProLeuPro 194587 : ACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAACAGTACTCAGATACCTCTGCCA : 194643 184 : TyrProSerTyrPheIlePhePheAsnProTyrIleArgProValTyrAspValValP : 203 ||| !||| !!!:!:!!|||||| ! ! ! !|||:!!|||!!::!!..!| TyrLeuSerAsnTyrValPhePheAlaIleGluAspSerProIleTyrGluIleThrP 194644 : TATTTGAGCAACTATGTTTTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACAT : 194703 204 : heLeuThrGlnCysLeuCysGlyPheThrArgTyrThrIleThrCysGlyValTyrSe : 222 ||:!!:!!||| ||| !.!! !! !! !! :!!! !.!||||||:!!||||| heValSerGlnIleLeuIleSerSerIleIleLeuSerThrAsnCysGlyIleTyrSe 194704 : TCGTCTCGCAGATACTGATTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAG : 194760 223 : rValValIleIleCysValMetHisIleCysSerArgIleThrValThrSerSerMet : 241 |:!!||| !! ! !:!!|||||| !|||.!! !.!! !|||||||||!!!! ! rLeuValAlaThrIleIleMetHisCysCysGlyLeuPheGluValThrSerArgArg 194761 : TTTGGTCGCTACTATTATTATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGG : 194817 242 : LeuGlnArgLeuAla : 246 :!!:!!! !:!!:!! MetGluThrIleSer 194818 : ATGGAGACTATTTCT : 194834 vulgar: NvOr7 10 246 . KQ414889.1 194126 194834 + 303 M 52 156 G 1 0 M 104 312 G 0 3 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194127 194834 303 + . gene_id 7 ; sequence NvOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194127 194834 . + . KQ414889.1 exonerate:protein2genome:local exon 194127 194834 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 194127 194834 303 + . alignment_id 7 ; Query NvOr7 ; Align 194127 11 156 ; Align 194283 64 312 ; Align 194598 168 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 301 Query range: 263 -> 389 Target range: 286690 -> 287222 264 : PheLeuAsnPheAlaAlaLysLeuAspAsnIlePheArgGluIlePheLeuValGluV : 283 .!!!!!!:!||| !:!!:!!:!!!!:...:!!.!.!.!||||||! !!!!||||||| IlePheSerPheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluV 286691 : ATTTTCAGTTTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGG : 286748 284 : alMetGlySerThrGlyValIleCysLeuLeuGlyTyrTyrPheIleThr >>>> T : 300 ||!!:|||!!!||| ! !||||||!!!||||||||||||!!.:!:||| alIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeuThr++ 286749 : TGATTGGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTACTGACGgt...... : 286801 301 : arget Intron 1 >>>> GluTyrGluGlnArgGluSerIleAlaThrIleThrT : 312 80 bp |||!::||||||!!!|||!!!|||!.!|||||||||| ++GluTrpGluGlnSerGluThrIleGlyThrIleThrT 286802 : ...................agGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGT : 286915 313 : yrPhePheLeuLeuMetSerPheValPheAsnIlePheIleLeuCysTyrIleGlyGl : 331 ||! ! ||||||:!:||||||..!||||||:!!|||||||||||||||||||||:! yrCysThrLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGl 286916 : ATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGA : 286972 332 : nValLeuThrGluLys >>>> Target Intron 2 >>>> CysGluSerIleA : 341 !:!!|||:!!|||::: 74 bp ||| !!.!:!!! uIleLeuSerGluGln++ ++CysLeuLysValG 286973 : AATTCTCTCCGAACaggt.........................agtGCTTAAAAGTCG : 287076 342 : laLysAlaAlaTyrThrThrLysTrpTyrGlnLeuThrGlyLysGluAlaArgSerIl : 360 .! !:!!.!!|||! !! ! ! ||||||!::||| !!|||||| !|||!:!.!!:! lyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLe 287077 : GCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTT : 287133 361 : eValPheIleValSerCysAsnHisArgProValGluLeuThrAlaGlyLysLeuLeu : 379 ::!!.!.||| !!:!! ::::!! ! !!:!!:!!|||||||||||||||:!!:!! uIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIle 287134 : GATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATC : 287190 380 : LysLeuSerLeuAsnSerPheSerSerIle : 389 ! |||||||||!:!||||||!!!|||:!: AspLeuSerLeuSerSerPheCysSerVal 287191 : GATCTCTCTTTAAGCAGCTTCTGCAGCGTG : 287222 vulgar: NvOr7 263 389 . KQ414889.1 286690 287222 + 301 M 36 108 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286691 287222 301 + . gene_id 8 ; sequence NvOr7 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286691 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286691 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287222 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287222 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286691 287222 301 + . alignment_id 8 ; Query NvOr7 ; Align 286691 264 108 ; Align 286879 300 111 ; Align 287064 337 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 262 Query range: 265 -> 404 Target range: 205882 -> 207607 266 : AsnPheAlaAlaLysLeuAspAsnIlePheArgGluIlePheLeuValGluValMetG : 285 !..||| ! !!!.:!!!!:!..||| ..! ! |||! !|||..!|||:!!:!!| ArgPheLeuLysAsnIleGluThrIleThrGluTyrIleCysLeuThrGluMetValG 205883 : AGATTTTTAAAGAACATTGAAACAATTACAGAGTACATTTGTTTAACCGAAATGGTGG : 205940 286 : lySerThrGlyValIleCysLeuLeuGlyTyrTyrPheIleThr >>>> Target : 300 ||.!!||||||:!!:!!||||||:!! !||||||.!!:!!! ! 66 lyGlyThrGlyLeuValCysLeuValTyrTyrTyrIleLeuMet++ 205941 : GCGGTACGGGTCTAGTATGTCTCGTGTATTATTACATTCTCATGgt............ : 205987 301 : Intron 1 >>>> GluTyrGluGlnArgGluSerIleAlaThrIleThrTyrPheP : 314 bp |||!::|||.!.!.!.!.!!!! !|||..!|||..!|||.!! ++GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleT 205988 : .............agGAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCA : 206093 315 : heLeuLeuMetSerPheValPheAsnIlePheIleLeuCysTyrIleGlyGlnValLe : 333 |||! !!!:|||! !..!||| !:!!||||||||||||||||||||||||:!!|| hrLeuGlnIleSerCysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLe 206094 : CGTTGCAGATATCTTGTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCT : 206150 334 : uThrGluLys >>>> Target Intron 2 >>>> CysGluSerIleAlaLysA : 343 |! !!!::!! 81 bp !.!. !:!:!.! !. uIleAspGln++ ++AsnHisValValGlyLeuT 206151 : TATCGATCAAgt.........................agAACCACGTCGTGGGATTGA : 206261 344 : laAlaTyrThrThrLysTrpTyrGlnLeuThrGlyLysGluAlaArgSerIleValPh : 362 !!:!!! !|||..!!!.||||||!::||| !!..!!:!.!.|||||||||!!::!!.! hrSerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLe 206262 : CATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACT : 206318 363 : eIleValSerCysAsnHisArgProValGluLeuThrAlaGlyLysLeuLeuLysLeu : 381 .|||:!!:!! ::!:!! !|||:!!:!!|||||||||||||||:!!!!!:!!:!! uIleIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMet 206319 : GATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATG : 206375 382 : SerLeuAsnSerPheSerSer >>>> Target Intron 3 >>>> IleIleLy : 391 |||||| !||||||!!!..! 1161 bp :!!!!:|| SerLeuAlaSerPheThrAsp++ ++ValMetLy 206376 : TCTTTAGCTAGTTTCACCGATgt.........................agGTAATGAA : 207566 392 : sAlaAlaAlaGlyTyrLeuAsnIleLeuArgThrAlaIle : 404 |!.!||| !||||||!!!|||||||||||| !!.!:!! sValAlaMetGlyTyrPheAsnIleLeuArgGluValVal 207567 : GGTGGCGATGGGATACTTCAACATACTCCGTGAAGTCGTA : 207607 vulgar: NvOr7 265 404 . KQ414889.1 205882 207607 + 262 M 34 102 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 52 156 5 0 2 I 0 1157 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 205883 207607 262 + . gene_id 9 ; sequence NvOr7 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 205883 205984 . + . KQ414889.1 exonerate:protein2genome:local exon 205883 205984 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 205985 205986 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 205985 206050 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206049 206050 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206398 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206398 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206399 206400 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206399 207559 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 207558 207559 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 207560 207607 . + . KQ414889.1 exonerate:protein2genome:local exon 207560 207607 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 205883 207607 262 + . alignment_id 9 ; Query NvOr7 ; Align 205883 266 102 ; Align 206051 300 111 ; Align 206243 337 156 ; Align 207560 389 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 258 Query range: 24 -> 237 Target range: 274380 -> 275028 25 : AspTyrAlaValGlnLeuThrArgLeuLeuLeuMetProCysGlyIleTrpPro<->A : 43 ||||||::!:!!||||||!.!|||! !!!!|||! !||| ||| |||||| | AspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuA 274381 : GACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAG : 274438 44 : laLysPheSerSerArgValGlnArgPheLeuArgProPheLeuIleValAlaCysCy : 62 ||..! !!!!!!!!:! !!:!!|||.!!||| !! !...|||||| ||| laSerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTy 274439 : CCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctA : 274495 63 : sPheValMetLeuPheLeuLeuValProValCysLeuPheMetPheLeuIleValArg : 81 !! ! !!!!:|||! ! !:!!:!!||| ! !!! !!!:.!.|||:!!! !..! rCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGlu 274496 : CTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAA : 274552 82 : AspValArgIleArgIleLysLeuLeuGlyProLeuGlyPheSerLeuMetSerLeuP : 101 ..!:!!!.!:!:!:!:!:||||||||||||||||||||| !!!!!!!!!:.!! !. SerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyI 274553 : AGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAA : 274612 102 : heLysTyrAlaValValIleIleArgSerArgGluIleGluLysCysIleGlnAsnMe : 120 !!!!.|||.!!..!:!!:!::!!||||||!:!||||||... |||:!::!!:!!|| leAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMe 274613 : TTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACAT : 274669 121 : tLeuAspAspTrpGlnGlnValAlaSerAspGluAspArgAspThrMetPheGluAsn : 139 |! ! ||||||::! |||.!!!!! ||||||!:!.!...!|||!!.:!!||| tGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsn 274670 : GCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAAC : 274726 140 : AlaArgThrGlyArgValLeuThrMetValCysMetPheLeuMetTyrGlyGlyGlyM : 159 |||!:!! !|||||| !:!!.!!!!: !!||| ! !!!||| ! !!|||! !: AlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValL 274727 : GCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTC : 274786 160 : etProTyrValThrIleValProLeuAlaLysGlyAlaThrMetValGlyAsnValSe : 178 !: !||| !..!|||..! !!!!!.!!! ! !.!!..!...|||||||||! !!! euCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluTh 274787 : TCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGAC : 274843 179 : rTyrArgAlaLeuAlaTyrPro<-><->SerTyrPheIlePhePheAsnProTyrIle : 195 ! ! !!.!! ! !! ||| :!!||| ! .!! !! ! !!! rArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThr 274844 : CAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACG : 274900 196 : ArgProValTyrAspValValPheLeuThrGlnCysLeuCysGlyPheThrArgTyrT : 215 !!!|||..! !!!!::!!|||.!! !:!!|||! !:!!! ||||||! ! ! !!: SerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnS 274901 : AGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATT : 274960 216 : hrIleThrCysGlyValTyrSerValValIleIleCysValMetHisIleCysSerAr : 234 !!! !.!! !|||!.!!:!|||:!!!.! !:!:! !!.! ||| !! !.!!!: erSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGl 274961 : CGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCA : 275017 235 : gIleThrVal : 237 !:!:!:!||| nLeuSerVal 275018 : GTTGAGCGTG : 275028 vulgar: NvOr7 24 237 . KQ414889.1 274380 275028 + 258 M 18 54 G 0 3 M 143 429 G 0 6 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274381 275028 258 + . gene_id 10 ; sequence NvOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274381 275028 . + . KQ414889.1 exonerate:protein2genome:local exon 274381 275028 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274381 275028 258 + . alignment_id 10 ; Query NvOr7 ; Align 274381 25 54 ; Align 274438 43 429 ; Align 274873 186 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 255 Query range: 26 -> 202 Target range: 294690 -> 295227 27 : AlaValGlnLeuThrArgLeuLeuLeuMetProCysGlyIleTrpProAlaLysPheS : 46 ::!:!!:!!! ! !||| !||||||! ||| !|||:!!|||||| !! !:!| SerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrS 294691 : AGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACA : 294748 47 : er<-><->SerArgValGlnArgPheLeuArgProPheLeuIleValAlaCysCysPh : 63 || |||!:!:!!.!.!:! !!||| ! !.!!||||||!.! !||| !! erHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLe 294749 : GTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTT : 294805 64 : eValMetLeuPheLeuLeuValProValCysLeuPheMetPheLeuIleValArgAsp : 82 ...!:!:||||||:!!||||||||| ! ! ! !||| ! !!! !|||:::::: uThrValLeuPheValLeuValProCysGlyTyrPheCysValPheHisValLysAsn 294806 : GACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaac : 294862 83 : ValArgIleArgIleLysLeuLeuGlyProLeuGlyPheSerLeuMetSerLeuPheL : 102 |||::::::::!!!:|||||||||||||||:!! !!:!|||:!!:!:|||:!!.!!! ValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuA 294863 : gtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCA : 294922 103 : ysTyrAlaValValIleIleArgSerArgGluIleGluLysCysIleGlnAsnMetLe : 121 :!|||::! !:!!:!!:!:!:!!!!! !! !.!!:!! ! ||||||:!!:!!!!: rgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCysIleGluAspIleGl 294923 : GGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGA : 294979 122 : uAspAspTrpGlnGlnValAlaSerAspGluAspArgAspThrMetPheGluAsnAla : 140 !:!!||||||:!! !:!!! !!:! ||| !!|||! ! !|||.!!:!!|||||| uAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIleMetIleLysAsnAla 294980 : GAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCG : 295036 141 : ArgThrGlyArgValLeuThrMetValCysMetPheLeuMetTyrGlyGlyGlyMetP : 160 ! !..! !!:! !:!!|||:!:!.!! !! .!!:!!!!:|||.!!..!!.!:!! MetValThrGlnArgMetThrValAlaPheThrIleIleIleTyrSerSerAlaValS 295037 : ATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGT : 295096 161 : roTyrValThrIleValProLeuAlaLysGlyAla<->ThrMetValGlyAsnValSe : 178 !!||| !.!!|||||||||... ......||| !! ! !||| !!! erTyrHisAlaIleValProPhePheSerAsnAlaLeuGluAsnLysLysAsnAsnTh 295097 : CGTATCACGCCATTGtgccatttttttcaaacgctTTGGAGAACAAGAAGAATAATAC : 295153 179 : rTyrArgAlaLeuAlaTyrProSerTyrPheIlePhePheAsnProTyrIleArgPro : 197 ! !||||||||| !! !|||.!!||| :!!||| ! :!! !!||| !!!!||| rIleArgAlaLeuProIleProGlyTyrGluLeuPheValAspAlaTyrSerSerPro 295154 : GATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGTCCT : 295210 198 : ValTyrAspValVal : 202 ..!|||!!::!!:!! ThrTyrGluIleIle 295211 : ACCTACGAGATCATA : 295227 vulgar: NvOr7 26 202 . KQ414889.1 294690 295227 + 255 M 20 60 G 0 6 M 125 375 G 0 3 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294691 295227 255 + . gene_id 11 ; sequence NvOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294691 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294691 295227 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294691 295227 255 + . alignment_id 11 ; Query NvOr7 ; Align 294691 27 60 ; Align 294757 47 375 ; Align 295135 172 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 247 Query range: 24 -> 242 Target range: 262846 -> 263509 25 : AspTyrAlaValGlnLeuThrArgLeuLeuLeuMetProCysGlyIleTrpProAlaL : 44 ||||||::!:!!|||:!!!.!|||! !||||||! ||| !||| !|||||| !. AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 45 : ysPheSer<->SerArgValGlnArgPheLeuArgProPheLeuIleValAlaCysCy : 62 .. !||| ||||||:!!:!!|||.!!:!! !! !.!!|||||||||!.!|||! erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 63 : sPheValMetLeuPheLeuLeuValProValCysLeuPheMetPheLeuIleValArg : 81 !! !:!!!!:|||! ! !:!!:!!||| ! ||| !!!: !!||| !!.!..! rCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGlu 262962 : CTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAG : 263018 82 : AspValArgIleArgIleLysLeuLeuGlyProLeuGlyPheSerLeuMetSerLeuP : 101 :!! !!!.!!!:!:!:!::!!:!!||||||||||||||| !!!!!!:!:.!!:!!. AsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetI 263019 : AATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGA : 263078 102 : heLysTyrAlaValValIleIleArgSerArgGluIleGluLysCysIleGlnAsnMe : 120 !!!!.|||.!! !:!!:!::!!!.!|||!:!!!:|||:!! |||:!:|||:!!:! leAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisVa 263079 : TCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGT : 263135 121 : tLeuAspAspTrpGlnGlnValAlaSerAspGluAspArgAspThrMetPheGluAsn : 139 !! !!!:|||||| |||.!!!!! ||||||!:! !! !|||.!.:!!||| lGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsn 263136 : GCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAAC : 263192 140 : AlaArgThrGlyArgValLeuThrMetValCysMetPheLeuMetTyrGlyGlyGlyM : 159 |||!:! !|||||| !:!!.!! !||| !.!!!!!||| ! !.!! !| AlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleM 263193 : GCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCA : 263252 160 : etProTyrValThrIleValProLeuAlaLysGlyAlaThrMetValGlyAsnValSe : 178 || ! ! ! !:!!..! !!!!!.!!! ! !!.!! ! !! !||||||! !!! etCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluTh 263253 : TGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGAC : 263309 179 : r<-><->TyrArgAlaLeuAlaTyrProSerTyrPheIlePhePheAsnProTyrIle : 195 ! ||| !||| !!! !||| !||| .!!.!! ! !!! rArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThr 263310 : TAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACG : 263366 196 : ArgProValTyrAspValValPheLeuThrGlnCysLeuCysGlyPheThrArgTyrT : 215 !.!|||..! !!!!::!! !!.!! !||||||! !|||! ||||||! ! ! !. AsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrA 263367 : AATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCG : 263426 216 : hrIleThrCysGlyValTyrSerValValIleIleCysValMetHisIleCysSerAr : 234 !!! !||| !|||!.!!:!.!!:!!..! :!:! !!.! ||| !|||.!!!: laThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGl 263427 : CGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACA : 263483 235 : gIleThrValThrSerSerMetLeu : 242 !:!:!.!||| !! !||| !:!! nLeuAsnValLeuMetSerTrpIle 263484 : GTTGAACGTGTTGATGTCCTGGATC : 263509 vulgar: NvOr7 24 242 . KQ414889.1 262846 263509 + 247 M 22 66 G 0 3 M 132 396 G 0 6 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 263509 247 + . gene_id 12 ; sequence NvOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262847 263509 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263509 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262847 263509 247 + . alignment_id 12 ; Query NvOr7 ; Align 262847 25 66 ; Align 262916 47 396 ; Align 263318 179 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 226 Query range: 299 -> 389 Target range: 280091 -> 280435 300 : GluTyrGluGlnArgGluSerIleAlaThrIleThrTyrPhePheLeuLeuMetSerP : 319 |||!::||||||!.!!!::!!|||!.!|||.!!||||||!!..!.!!!|||!!:|||! GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerL 280092 : GAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTT : 280149 320 : heValPheAsnIlePheIleLeuCysTyrIleGlyGlnValLeuThrGluLys >>> : 337 !...!||||||:!!|||||||||||||||||||||:!!:!!|||:!!|||::: euThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 280150 : TAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt... : 280205 338 : > Target Intron 1 >>>> CysGluSerIleAlaLysAlaAlaTyrThrThrL : 348 74 bp ||| !!.!:!!!.! !:!!.!!|||! !! ! ++CysLeuLysValGlyValSerThrTyrMetIleA 280206 : ......................agTGCTTAAAAGTCGGCGTGTCAACTTACATGATCG : 280310 349 : ysTrpTyrGlnLeuThrGlyLysGluAlaArgSerIleValPheIleValSerCysAs : 367 ! ||||||!::||| !!||||||:!!|||!:!.!!:!::!!.!.||| !!:!! :: spTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaValSe 280311 : ACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCGTGTC : 280367 368 : nHisArgProValGluLeuThrAlaGlyLysLeuLeuLysLeuSerLeuAsnSerPhe : 386 ::!! ! !!:!!:!!|||||||||||||||:!!:!! ! |||||||||!:!|||||| rAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPhe 280368 : GAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTC : 280424 387 : SerSerIle : 389 !!!|||:!: CysSerVal 280425 : TGCAGCGTG : 280435 vulgar: NvOr7 299 389 . KQ414889.1 280091 280435 + 226 M 37 111 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280092 280435 226 + . gene_id 13 ; sequence NvOr7 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280435 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280435 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280092 280435 226 + . alignment_id 13 ; Query NvOr7 ; Align 280092 300 111 ; Align 280277 337 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 219 Query range: 299 -> 402 Target range: 228247 -> 230512 300 : GluTyrGluGlnArgGluSerIleAlaThrIleThrTyrPhePheLeuLeuMetSerP : 319 |||!::.!.! !!:!|||! !! ! !.!!:!!||||||! ||||||:!:|||| GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerP 228248 : GAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCT : 228305 320 : heValPheAsnIlePheIleLeuCysTyrIleGlyGlnValLeuThrGluLys >>> : 337 ||...|||||||||||||||...||||||||||||:!!:!!:!!.!!||| ! heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluHis++ 228306 : TTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAACACgt... : 228361 338 : > Target Intron 1 >>>> CysGluSerIleAlaLysAlaAlaTyrThrThrL : 348 1889 bp |||..!!.!:!!!.!:!! !:!!|||! !! !: ++CysArgLysValGlyGluLysSerTyrMetIleG 228362 : ......................agTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCG : 230281 349 : ysTrpTyrGlnLeuThrGlyLysGluAlaArgSerIleValPheIleValSerCysAs : 367 !!||||||!:!|||||||||!!.:!! !! !!!! !:!!!!.|||:!!:!! :: luTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSe 230282 : AATGGTACCGATTAACCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTC : 230338 368 : nHisArgProValGluLeuThrAlaGlyLysLeuLeuLysLeuSerLeuAsnSerPhe : 386 !:!! !! !!..!:!!!!!|||||||||!!.:!!:!!:!!||||||:!!|||!!!||| rAsnCysSerThrLysPheThrAlaGlyAsnMetValGluLeuSerValAsnThrPhe 230339 : CAATTGCTCGACGAAATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACACTTTC : 230395 387 : SerSer >>>> Target Intron 2 >>>> IleIleLysAlaAlaAlaGlyTy : 396 |||..! 67 bp :!!:!!|||.!!:!! !|||!: SerAsp++ ++ValValLysThrSerMetGlyPh 230396 : AGCGACgt.........................agGTCGTTAAAACGTCCATGGGTTT : 230492 397 : rLeuAsnIleLeuArgThr : 402 !||||||!!:||||||||| eLeuAsnMetLeuArgThr 230493 : CTTAAACATGCTACGAACA : 230512 vulgar: NvOr7 299 402 . KQ414889.1 228247 230512 + 219 M 37 111 5 0 2 I 0 1885 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228248 230512 219 + . gene_id 14 ; sequence NvOr7 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230403 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230403 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 230404 230405 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 230404 230470 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 230469 230470 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230471 230512 . + . KQ414889.1 exonerate:protein2genome:local exon 230471 230512 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228248 230512 219 + . alignment_id 14 ; Query NvOr7 ; Align 228248 300 111 ; Align 230248 337 156 ; Align 230471 389 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 212 Query range: 299 -> 389 Target range: 301686 -> 302036 300 : GluTyrGluGlnArgGluSerIleAlaThrIleThrTyrPhePheLeuLeuMetSerP : 319 |||!:::!!.!.!!!!!:!!!||||||! !:!:|||!:!||| !||||||! !|||| GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerP 301687 : GAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGT : 301744 320 : heValPheAsnIlePheIleLeuCysTyrIleGlyGlnValLeuThrGluLys >>> : 337 ||..!|||||||||||||||!!!||||||||||||:!!:!!|||:!!|||:!! heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGln++ 301745 : TCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGgt... : 301800 338 : > Target Intron 1 >>>> CysGluSerIleAlaLysAlaAlaTyrThrThrL : 348 80 bp |||.....!|||!.!..!|||:!!||| !! ! ++CysSerGlnIleGlySerAlaSerTyrGluIleA 301801 : ......................agTGTAGCCAAATTGGTTCAGCATCGTACGAGATCG : 301911 349 : ysTrpTyrGlnLeuThrGlyLysGluAlaArgSerIleValPheIleValSerCysAs : 367 ! ||||||.!.||| !!!.!|||..!||| !..!:!!:!!.!.:!! ! ! :: spTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSe 301912 : ATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATC : 301968 368 : nHisArgProValGluLeuThrAlaGlyLysLeuLeuLysLeuSerLeuAsnSerPhe : 386 :!!. !||| !:!!|||||||||||||||:!!:!! ! ||||||||||||!!!||| rGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPhe 301969 : GCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTC : 302025 387 : SerSerIle : 389 ||||||:!! SerSerVal 302026 : AGCTCTGTA : 302036 vulgar: NvOr7 299 389 . KQ414889.1 301686 302036 + 212 M 37 111 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301687 302036 212 + . gene_id 15 ; sequence NvOr7 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301687 302036 212 + . alignment_id 15 ; Query NvOr7 ; Align 301687 300 111 ; Align 301878 337 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 264 -> 336 Target range: 210492 -> 210774 265 : LeuAsnPheAlaAlaLysLeuAspAsnIlePheArgGluIlePheLeuValGluValM : 284 !!!!:!||| !||| ! !!!:|||:!!.!.!.!||||||! |||:!!|||:!!: PheSerPheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGluMetV 210493 : TTCAGTTTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAATGG : 210550 285 : etGlySerThrGlyValIleCysLeuLeuGlyTyrTyrPheIleThr >>>> Targ : 300 !!|||!!!||| ! !!!:|||!!!|||||||||||| !!:! ! alGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210551 : TGGGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt......... : 210600 301 : et Intron 1 >>>> GluTyrGluGlnArgGluSerIleAlaThrIleThrTyrP : 313 66 bp |||!::!!:...!:!!!: !!|||::!!:!:!:||||||. ++GluTrpAspSerLysAspProIleSerSerLeuThrTyrI 210601 : ................agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACA : 210703 314 : hePheLeuLeuMetSerPheValPheAsnIlePheIleLeuCysTyrIleGlyGlnVa : 332 !. ! ||||||! ||| !!..!|||||||||||||||!!!||||||||||||:!!|| leValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluVa 210704 : TAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGT : 210760 333 : lLeuThrGluLys : 336 ||||.!!|||:!: lLeuAlaGluGln 210761 : GTTGGCTGAACAg : 210774 vulgar: NvOr7 264 336 . KQ414889.1 210492 210774 + 166 M 35 105 5 0 2 I 0 62 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210493 210774 166 + . gene_id 16 ; sequence NvOr7 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 210493 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210493 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210493 210774 166 + . alignment_id 16 ; Query NvOr7 ; Align 210493 265 105 ; Align 210664 300 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 299 -> 389 Target range: 238411 -> 238787 300 : GluTyrGluGlnArgGluSerIleAlaThrIleThrTyrPhePheLeuLeuMetSerP : 319 |||!::! !:!!!!!!!::!!! ! ! !|||||||||||| ! !|||:!::!!. GluTrpAlaGluSerAspAlaLysIleLeuIleThrTyrPheValAlaLeuValAlaI 238412 : GAATGGGCAGAGAGCGATGCTAAAATCTTAATCACGTACTTTGTAGCACTCGTTGCTA : 238469 320 : heValPheAsnIlePheIleLeuCysTyrIleGlyGlnValLeuThrGluLys >>> : 337 !!|||! !|||! !||||||||||||||||||.!!:!! !|||||||||:!! leValSerAsnThrPheIleLeuCysTyrIleSerGluArgLeuThrGluGln++ 238470 : TTGTTTCTAATACATTTATACTCTGTTATATCAGCGAAAGGCTGACAGAACAGgt... : 238525 338 : > Target Intron 1 >>>> CysGluSerIleAlaLysAlaAlaTyrThrThrL : 348 106 bp ||| !!.!:!!!.!:!!!.!!.!|||! !||| ++CysLeuLysValGlyGluValValTyrMetThrA 238526 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 238662 349 : ysTrpTyrGlnLeuThrGlyLysGluAlaArgSerIleValPheIleValSerCysAs : 367 ! |||||| ! ||| !! !!:!..! !! !..!:!!:!!.!.|||:!!!.! ! :: spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleLysArgSe 238663 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTAAACGATC : 238719 368 : nHisArgProValGluLeuThrAlaGlyLysLeuLeuLysLeuSerLeuAsnSerPhe : 386 ::!! ! !|||:!!:!!||||||||||||:!!||| ! :!!|||||| !!!!!||| rAsnValValValLysValThrAlaGlyLysValLeuHisMetSerLeuTyrThrPhe 238720 : GAACGTGGTCGTTAAAGTCACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTC : 238776 387 : SerSerIle : 389 .!!..!:!! GlyAspVal 238777 : GGCGATGTA : 238787 vulgar: NvOr7 299 389 . KQ414889.1 238411 238787 + 150 M 37 111 5 0 2 I 0 102 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238412 238787 150 + . gene_id 17 ; sequence NvOr7 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 238412 238522 . + . KQ414889.1 exonerate:protein2genome:local exon 238412 238522 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 238523 238524 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 238523 238628 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 238627 238628 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 238629 238787 . + . KQ414889.1 exonerate:protein2genome:local exon 238629 238787 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238412 238787 150 + . alignment_id 17 ; Query NvOr7 ; Align 238412 300 111 ; Align 238629 337 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 265 -> 340 Target range: 257478 -> 258387 266 : AsnPheAlaAlaLysLeuAspAsnIlePheArgGluIlePheLeuValGluValMetG : 285 !:!||| !:!! ! :!!!!:.!.:!:.!.!.!..!|||! !!!!:!!|||:!!.!. SerPheIleSerTyrIleGluGluValMetAsnArgIleCysPheLeuGluLeuPheA 257479 : AGTTTCATATCATATATCGAGGAAGTGATGAACCGAATATGTTTTTTAGAGTTGTTTA : 257536 286 : lySerThrGlyValIleCysLeuLeuGlyTyrTyrPheIleThr >>>> Target : 300 !!!!!||| !!.!||||||:!!||||||||||||.!!:!!.!! 68 rgCysThrLeuAlaIleCysMetLeuGlyTyrTyrIleLeuAla++ 257537 : GATGCACGCTGGCTATATGCATGCTGGGATACTACATTCTTGCGgt............ : 257583 301 : Intron 1 >>>> GluTyrGluGlnArgGluSerIleAlaThrIleThrTyrPheP : 314 4 bp |||!::... !!::::: :::||||||. ++GluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheM 257584 : .............aggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTA : 258307 315 : heLeuLeuMetSerPheValPheAsnIlePheIleLeuCysTyrIleGlyGlnValLe : 333 !.:!!|||!!:|||... ||||||||||||::::::||||||||||||:!!:!!|| etIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLe 258308 : TGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATT : 258364 334 : uThrGluLysCysGluSerIle : 340 |||||||:!! ...||| uThrGluGlnValProGluIle 258365 : AACAGAACAGGTACCagagatt : 258387 vulgar: NvOr7 265 340 . KQ414889.1 257478 258387 + 149 M 34 102 5 0 2 I 0 680 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 257479 258387 149 + . gene_id 18 ; sequence NvOr7 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 257479 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257479 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258387 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258387 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 257479 258387 149 + . alignment_id 18 ; Query NvOr7 ; Align 257479 266 102 ; Align 258265 300 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 299 -> 389 Target range: 224323 -> 224658 300 : GluTyrGluGlnArgGluSerIleAlaThrIleThrTyrPhePheLeuLeuMetSerP : 319 |||:::...... .!.! !! !::!.!!:!:|||||||||.!.||||||||||||. GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 320 : heValPheAsnIlePheIleLeuCysTyrIleGlyGlnValLeuThrGluLysCysGl : 338 .....|||||||||||||||...||||||||||||:!!:!!:!!.!!|||::: :: euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGlnValLy 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcaggtgaa : 224438 339 : u{S} >>>> Target Intron 1 >>>> {er}IleAlaLysAlaAlaTyrThr : 346 :{!} 65 bp {.!}|||...::!!.!:!!|||! ! s{L}-+ +-{ys}IleGlyGlnValSerTyrMet 224439 : a{a}at.........................aa{aa}attggacaAGTGTCGTACATG : 224527 347 : ThrLysTrpTyrGlnLeuThrGlyLysGluAlaArgSerIleValPheIleValSerC : 366 ! ! ! ||||||!:!|||||||||!!.:!! !! !!!! !:!!.!.|||:!!:!! IleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaM 224528 : ATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCTGATAATCGCGA : 224587 367 : ysAsnHisArgProValGluLeuThrAlaGlyLysLeuLeuLysLeuSerLeuAsnSe : 385 ::!:!! ! !!:!!:!!||||||||||||!!.:!!:!!:!!|||!!!|||!.!!! etSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuCysLeuThrTh 224588 : TGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTGTGTCTAACCAC : 224644 386 : rPheSerSerIle : 389 !|||.!!..!:!! rPheGlyAspVal 224645 : TTTCGGTGACGTA : 224658 vulgar: NvOr7 299 389 . KQ414889.1 224323 224658 + 148 M 39 117 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224658 148 + . gene_id 19 ; sequence NvOr7 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224324 224441 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224441 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224442 224443 . + . intron_id 1 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local intron 224442 224506 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224505 224506 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 224507 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224507 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224658 148 + . alignment_id 19 ; Query NvOr7 ; Align 224324 300 117 ; Align 224509 340 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 175 -> 252 Target range: 300189 -> 300420 176 : AsnValSerTyrArgAlaLeuAlaTyrProSerTyrPheIlePhePheAsnProTyrI : 195 ||| !!!!|||!:! !!||||||||||||.!!||| ! |||.!!:!! !! ! ! AsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnT 300190 : AATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAA : 300247 196 : leArgProValTyrAspValValPheLeuThrGlnCysLeuCysGlyPheThrArgTy : 214 !!!!|||..!|||!!::::||||||... ...|||.!!...!.!.!.! !! !|| hrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTy 300248 : CCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTA : 300304 215 : rThrIleThrCysGlyValTyrSerValValIleIleCysValMetHisIleCysSer : 233 |!.!:!:||| !.!!.!||||||:!!!.! |||! !|||! |||||||||.!! rAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGly 300305 : CAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGA : 300361 234 : ArgIleThrValThrSerSerMetLeuGlnArgLeuAlaAspAsnTyrAspAsnLys : 252 !:!||| !:!! !! !:!!! |||:!! !|||!.!!!:!.. ! .!.||| GlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrGlyGluLys 300362 : CAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGGGAGAGAAG : 300420 vulgar: NvOr7 175 252 . KQ414889.1 300189 300420 + 142 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300190 300420 142 + . gene_id 20 ; sequence NvOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 300190 300420 . + . KQ414889.1 exonerate:protein2genome:local exon 300190 300420 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300190 300420 142 + . alignment_id 20 ; Query NvOr7 ; Align 300190 176 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 299 -> 389 Target range: 254071 -> 254433 300 : GluTyrGluGlnArgGluSerIleAlaThrIleThrTyrPhePheLeuLeuMetSerP : 319 |||!:: !:!!!!!!!::!! ! ! !.!!||||||.!! ! !|||:!::!! GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaV 254072 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTG : 254129 320 : heValPheAsnIlePheIleLeuCysTyrIleGlyGlnValLeuThrGluLys >>> : 337 !!||| ||| |||::::::|||||||||.!!.!. !|||||||||:!! alValSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 254130 : TTGTTtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt... : 254185 338 : > Target Intron 1 >>>> CysGluSerIleAlaLysAlaAlaTyrThrThrL : 348 92 bp ||| !!.!:!!!.!:!!!.!!.!|||! !||| ++CysLeuLysValGlyGluValValTyrMetThrA 254186 : ......................agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAG : 254308 349 : ysTrpTyrGlnLeuThrGlyLysGluAlaArgSerIleValPheIleValSerCysAs : 367 ! |||||| ! ||| !! !!:!..! !! !..!:!!:!!.!.|||:!!!!! ! :: spTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSe 254309 : ATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATC : 254365 368 : nHisArgProValGluLeuThrAlaGlyLysLeuLeuLysLeuSerLeuAsnSerPhe : 386 ::!! ! !||||||:!!||||||||||||:::... :::|||||| !!!!!||| rAsnValValValGluIleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPhe 254366 : GAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatgTCGCTTTACACGTTC : 254422 387 : SerSerIle : 389 .!!..!:!! GlyAspVal 254423 : GGCGATGTA : 254433 vulgar: NvOr7 299 389 . KQ414889.1 254071 254433 + 136 M 37 111 5 0 2 I 0 88 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254072 254433 136 + . gene_id 21 ; sequence NvOr7 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254072 254182 . + . KQ414889.1 exonerate:protein2genome:local exon 254072 254182 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254183 254184 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254183 254274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254273 254274 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254275 254433 . + . KQ414889.1 exonerate:protein2genome:local exon 254275 254433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254072 254433 136 + . alignment_id 21 ; Query NvOr7 ; Align 254072 300 111 ; Align 254275 337 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 296 -> 401 Target range: 277362 -> 277833 297 : PheIleThrGluTyrGluGlnArgGluSerIleAlaThrIleThrTyrPhePheLeuL : 316 |||.!! !|||!::....!.!!!!!: ! .!!! !! !|||:!!|||.!.:!!| PhePhe***GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleL 277363 : TTTTTCTAGGAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCC : 277420 317 : euMetSerPheValPheAsnIlePheIleLeuCys{T} >>>> Target Intron : 328 ||!!:|||.!. |||||||||||| !:!!|||{|} 72 bp euIleSerMetCysPheAsnIlePheThrValCys{T}-+ 277421 : TTATATCCATgtgtttcaacatttttacAGTATGC{T}at.................. : 277459 329 : 1 >>>> {yr}IleGlyGlnValLeuThrGluLysCysGluSerIleAlaLysAla : 343 {||}! ! !!:! ! ! !..!:!!|||:!!!.!:!!!.!:!!!.! ++{yr}ThrHisArg***AsnPheArgGlnCysLysLysValGlyGluVal 277460 : .......ag{AT}ACTCACCGATGAAATTTCCGACAGTGTAAAAAAGTTGGTGAGGTG : 277573 344 : AlaTyrThrThrLysTrpTyrGlnLeuThrGlyLysGluAlaArgSerIleValPheI : 363 !.!|||! !|||!!.|||||| ! ||| !!! !|||!!: !! !!:!:!::!!.!!| ValTyrMetThrAsnTrpTyrTyrLeuProAspLysAspIleLeuAsnLeuLeuLeuI 277574 : GTTTATATGACGAATTGGTATTATTTACCCGACAAAGATATTCTCAATTTGCTTCTCA : 277633 364 : leValSerCysAsnHisArgProValGluLeuThrAlaGlyLysLeuLeuLysLeuSe : 382 ||:!!||| ! ::! ! :::::::::|||||||||||||||:::::::::|| leIleSerArgSerSerLeuValIleLysIleThrAlaGlyLysLeuIleGlnMetSe 277634 : TCATTTCAAGATCTAGCctggtaattaaaattaccgctggaaaattaattcaaatgtC : 277690 383 : rLeuAsnSerPheSerSer >>>> Target Intron 2 >>>> IleIleLysA : 392 |:!! !!!!!|||.!!..! 84 bp :!!||||||. rValTyrThrPheGlyAsp++ ++ValIleLysT 277691 : CGTGTACACGTTCGGCGATgt.........................agGTAATAAAAA : 277804 393 : laAlaAlaGlyTyrLeuAsnIleLeuArg : 401 !!.!! !...|||||||||||||||||| hrThrPheAlaTyrLeuAsnIleLeuArg 277805 : CCACTTTCgcgtatttaaatattctacgC : 277833 vulgar: NvOr7 296 401 . KQ414889.1 277362 277833 + 136 M 31 93 S 0 1 5 0 2 I 0 68 3 0 2 S 1 2 M 60 180 5 0 2 I 0 80 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277363 277833 136 + . gene_id 22 ; sequence NvOr7 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277363 277456 . + . KQ414889.1 exonerate:protein2genome:local exon 277363 277456 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277457 277458 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local intron 277457 277528 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277527 277528 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277529 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277529 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277833 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277833 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277363 277833 136 + . alignment_id 22 ; Query NvOr7 ; Align 277363 297 93 ; Align 277531 329 180 ; Align 277795 389 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 337 -> 389 Target range: 292395 -> 292551 338 : GluSerIleAlaLysAlaAlaTyrThrThrLysTrpTyrGlnLeuThrGlyLysGluA : 357 .....!|||||| ! |||:!!||| !|||:!!||||||.!.||| !! !!::!:!!| SerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgArgLysA 292396 : AGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGG : 292453 358 : laArgSerIleValPheIleValSerCysAsnHisArgProValGluLeuThrAlaGl : 376 |||||..!||||||.!.:!::!!:!! !.. ! !.!|||:!!:!!||||||||||| laArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuThrAlaGl 292454 : CTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGG : 292510 377 : yLysLeuLeuLysLeuSerLeuAsnSerPheSerSerIle : 389 ||||:!!!!! ||||||||||||!!!|||.!!:!!:!! yLysIlePheValLeuSerLeuAsnThrPheGlyAlaVal 292511 : CAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTA : 292551 vulgar: NvOr7 337 389 . KQ414889.1 292395 292551 + 130 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292396 292551 130 + . gene_id 23 ; sequence NvOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292396 292551 . + . KQ414889.1 exonerate:protein2genome:local exon 292396 292551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292396 292551 130 + . alignment_id 23 ; Query NvOr7 ; Align 292396 338 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 333 -> 389 Target range: 234979 -> 235147 334 : ThrGluLysCysGluSerIleAlaLysAlaAlaTyrThrThrLysTrpTyrGlnLeuT : 353 |||:!!:!!||| !.!:!!!.!:!! !!.!|||! !|||:!!||||||!:!||| ThrGlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuP 234980 : ACTCAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTAC : 235037 354 : hrGlyLysGluAlaArgSerIleValPheIleValSerCysAsnHisArgProValGl : 372 !! !||| |||! !.!!:!:|||.!.|||:!!||| ! ::: !! ! !:!!:! roHisLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLy 235038 : CTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAA : 235094 373 : uLeuThrAlaGlyLysLeuLeuLysLeuSerLeuAsnSerPheSerSerIle : 389 !:!!||||||||||||!!!|||:!!:!!|||:!! !!!|||.!!..!:!: sIleThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235095 : AATCACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: NvOr7 333 389 . KQ414889.1 234979 235147 + 114 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234980 235147 114 + . gene_id 24 ; sequence NvOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234980 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234980 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234980 235147 114 + . alignment_id 24 ; Query NvOr7 ; Align 234980 334 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 335 -> 401 Target range: 264723 -> 265001 336 : LysCysGluSerIleAlaLysAlaAlaTyrThrThrLysTrpTyrGlnLeuThrGlyL : 355 :!!|||:!!!.!:!!!.!:!!!.!!.!|||! !:!!!!.|||||| ! ||| !! !| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 356 : ysGluAlaArgSerIleValPheIleValSerCysAsnHisArgProValGluLeuTh : 374 ||!!: !! !..!:!::!!.!!|||:!!! ! ! ::! ! ! ! !!:!!!!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 375 : rAlaGlyLysLeuLeuLysLeuSerLeuAsnSerPheSerSer >>>> Target I : 389 ||||||||||:!!||| ! :!!|||:!! !!!!!||||||..! 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 390 : ntron 1 >>>> IleIleLysAlaAlaAlaGlyTyrLeuAsnIleLeuArg : 401 bp :!!||||||:!!:!! ! !|||||||||:!!|||||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArg 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGC : 265001 vulgar: NvOr7 335 401 . KQ414889.1 264723 265001 + 112 M 53 159 5 0 2 I 0 76 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265001 112 + . gene_id 25 ; sequence NvOr7 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265001 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265001 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265001 112 + . alignment_id 25 ; Query NvOr7 ; Align 264724 336 159 ; Align 264963 389 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 291 -> 336 Target range: 305076 -> 305211 292 : LeuLeuGlyTyrTyrPheIleThrGluTyrGluGlnArgGluSerIleAlaThrIleT : 311 !!!||| |||... !!!:!::|||...!!!.!.!!!:!!::! !! !| PheLeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrT 305077 : TTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAA : 305134 312 : hrTyrPhePheLeuLeuMetSerPheValPheAsnIlePheIleLeuCysTyrIleGl : 330 ||||| ! ||||||!!:||| ! ..!||||||||||||||||||||||||||||| hrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGl 305135 : CATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGG : 305191 331 : yGlnValLeuThrGluLys : 336 |:!!:!!|||! !|||||| yGluIleLeuMetGluLys 305192 : TGAGATTCTTATGGAAAAG : 305211 vulgar: NvOr7 291 336 . KQ414889.1 305076 305211 + 108 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305077 305211 108 + . gene_id 26 ; sequence NvOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305077 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305077 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305077 305211 108 + . alignment_id 26 ; Query NvOr7 ; Align 305077 292 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 296 -> 336 Target range: 272827 -> 272947 297 : PheIleThrGluTyrGluGlnArgGluSerIleAlaThrIleThrTyrPhePheLeuL : 316 |||... |||!:: .!.!.!!!:! ! ::! !! !|||||||||.!.:!!| PhePhe***GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleL 272828 : tttttctaggAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATAC : 272885 317 : euMetSerPheValPheAsnIlePheIleLeuCysTyrIleGlyGlnValLeuThrGl : 335 ||!!:|||.!....|||||||||||||||::!||||||||||||:!!:!!|||||||| euIleSerMetThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGl 272886 : TTATATCCATgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGA : 272942 336 : uLys : 336 |!:! uArg 272943 : GAGG : 272947 vulgar: NvOr7 296 336 . KQ414889.1 272827 272947 + 107 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272828 272947 107 + . gene_id 27 ; sequence NvOr7 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272828 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272828 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272828 272947 107 + . alignment_id 27 ; Query NvOr7 ; Align 272828 297 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 264 -> 333 Target range: 291131 -> 291470 265 : LeuAsnPheAlaAlaLysLeuAspAsnIlePheArgGluIlePheLeuValGluValM : 284 ......|||.!! !! !:!!!!:!:! !!.!.!||||||||||||:!!||||||! PheArgPheThrArgMetIleGluSerAlaLeuHisGluIlePheLeuIleGluValI 291132 : ttcagATTCACGAGGATGATCGAAAGCGCGTTGCATGAAATATTCTTGATAGAAGTAA : 291189 285 : etGlySerThrGlyValIleCysLeuLeuGlyTyrTyrPheIleThrGluTyr{Gl} : 302 !:! !||||||! !:!!:!!||||||:!!! !||| !!!.!!:! !! ! ! {:!} leValSerThrValLeuLeuCysLeuIleGluTyrLeuLeuMetMetValLys{Ly}+ 291190 : TAGTATCCACTGTGTTACTATGCTTGATCGAATATCTCTTAATGATGGTAAAA{AA}g : 291245 303 : >>>> Target Intron 1 >>>> {u}GlnArgGluSerIleAlaThrIleThr : 311 132 bp {!}...!!!!!:||||||!.!! !:!!||| + --{s}SerSerAspSerIleGlyIleLeuThr 291246 : t.........................ga{G}AGTAGCGATTCGATCGGGATATTAACA : 291402 312 : TyrPhePheLeuLeuMetSerPheValPheAsnIlePheIleLeuCysTyrIleGlyG : 331 ||| !! !||||||! ||||||..!|||||||||.!.|||!!!||||||:!!|||: TyrValThrLeuLeuThrSerPheThrPheAsnIleLeuIlePheCysTyrValGlyG 291403 : TACGTCACTCTCCTCACTTCTTTCACTTTCAACATACTGATATTCTGTTACGTTGGCG : 291462 332 : lnValLeu : 333 !!:!!||| luLeuLeu 291463 : AACTTCTT : 291470 vulgar: NvOr7 264 333 . KQ414889.1 291131 291470 + 105 M 37 111 S 0 2 5 0 2 I 0 128 3 0 2 S 1 1 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291132 291470 105 + . gene_id 28 ; sequence NvOr7 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291132 291244 . + . KQ414889.1 exonerate:protein2genome:local exon 291132 291244 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291245 291246 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291245 291376 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 291375 291376 . + . intron_id 0 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local cds 291377 291470 . + . KQ414889.1 exonerate:protein2genome:local exon 291377 291470 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291132 291470 105 + . alignment_id 28 ; Query NvOr7 ; Align 291132 265 111 ; Align 291378 303 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 327 -> 382 Target range: 292386 -> 292551 328 : PheGluSerThrGluLeuAspTyrAlaAlaTyrAspSerAspTrpTyrAsnLeuProP : 347 !:!:!!.!!!:!|||:!!! :!!|||:!!||||||!!!!!:||||||||||||||| TyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProA 292387 : TACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGA : 292444 348 : roLysAspThrLysLeuLeuLeuLeuLeuMetHisArgSerArgLysProLeuGluIl : 366 !::! ! .!!::: !:!!:!!|||:!!:!: !! !!!!!:! ! |||:!!:!!:! rgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLe 292445 : GACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACT : 292501 367 : eThrAlaGlyLysPheCysAlaPheSerLeuArgLeuTyrCysSerIle : 382 !||||||||||||.!.! !!.!.!!||||||!.! !!:! !!:!!:!! uThrAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaVal 292502 : TACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTA : 292551 vulgar: NvOr14 327 382 . KQ414889.1 292386 292551 + 114 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292387 292551 114 + . gene_id 1 ; sequence NvOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292387 292551 . + . KQ414889.1 exonerate:protein2genome:local exon 292387 292551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292387 292551 114 + . alignment_id 1 ; Query NvOr14 ; Align 292387 328 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr14 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 330 -> 382 Target range: 301880 -> 302036 331 : ThrGluLeuAspTyrAlaAlaTyrAspSerAspTrpTyrAsnLeuProProLysAspT : 350 !:!:!!:!!! !! |||:!!|||!!:! !|||||||||||||||||| !!||| . SerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgA 301881 : AGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAG : 301938 351 : hrLysLeuLeuLeuLeuLeuMetHisArgSerArgLysProLeuGluIleThrAlaGl : 369 !! ! !|||:!!||||||! ! !|||!:! ! |||! !:!!:!!|||||||| laTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGl 301939 : CATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGG : 301995 370 : yLysPheCysAlaPheSerLeuArgLeuTyrCysSerIle : 382 ||||.!. !! !!!.||||||!.! !!:! !!|||:!! yLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301996 : GAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: NvOr14 330 382 . KQ414889.1 301880 302036 + 101 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301881 302036 101 + . gene_id 2 ; sequence NvOr14 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301881 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301881 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301881 302036 101 + . alignment_id 2 ; Query NvOr14 ; Align 301881 331 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 272 Query range: 17 -> 240 Target range: 289726 -> 290401 18 : AspPheGluTyrAlaIleGlnIleLeuArgTrpLeuPheGlnProMetGlyIleTrpP : 37 |||.!....|||.!!.!!:!!:!!! !!.!|||:!!!!.:!!|||!!:|||!!:!::| AspIleArgTyrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrP 289727 : GACATACGTTACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATC : 289784 38 : roLeuLysSerAlaAlaTyrProSerPheLeuArgProIleSerIleValIleSerPh : 56 ||!!! ! !::! ! !!!! ! !||| !! |||:!::!!:!:! !.! roPheValPheSerArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLe 289785 : CTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCT : 289841 57 : eTrpSerAlaAla<-><-><->PheLeuIleIleProGlyIleLeuSerValIleArg : 72 . !!!..!:!! |||:!!|||:!!||| !! !! ! !|||:!! ! uValCysCysSerIleLeuGlnPheIleIleValProPheSerHisHisValLeuPhe 289842 : GGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTC : 289898 73 : ValGlnAsnAspPheAlaLeuArgLeuArgLeuIleGlyProValSerPheCysLeuV : 92 !.!.||||||.!. ! ! !:!!!:! !:!!||||||:!!!!!|||||||||. SerAspAsnAspMetAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuT 289899 : AGCGACAACGACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGA : 289958 93 : alThrSerPheLysTyrPheSerPheLeuValLysAsnArgGlnPheTyrAlaTyrLe : 111 .!|||! !|||||||||! !! !||| !:!!|||..! ! !.!! ! !! !:! hrThrPhePheLysTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysVa 289959 : CCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGT : 290015 112 : uIleAsnValAlaLeuAspTrpArgGluMetLysLysAsnAsnHisAsnArgIleIle : 130 !! !:!!:!!! ! !||||||!:! !:!!::: ! .!.:!!||| |||:!!||| lLysHisIleGluArgAspTrpLysMetLeuArgAspGluAspHis---ArgValIle 290016 : GAAACACATCGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCAT---CGTGTTATC : 290069 131 : MetLeuArgLysThrGlnIleSerArgPhePheMetThrSerCysSerIleCysMetT : 150 ||||||||| ! ..! !!!:|||||| !.!!!!:! ! !|||:!!|||! !:!!| MetLeuArgTyrValThrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuT 290070 : ATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGT : 290129 151 : yrLeuSerGlyMetSerTyrAsnIleLeuLeuProLeuThrLysAlaProThrGlnVa : 169 ||:!!.!!|||:!!|||||||||! !:!!:!!|||||| !..! ! !!:! ! yrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPheSerLysLysSerValAs 290130 : ACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAAGAGCGTGAA : 290186 170 : lGlyAsnValThrPheLysAsnLeuProTyrIleGlyTyrTyrIlePhePheAspGln : 188 !||||||||||||.!!!:! !||| !!||| !|||||| ! ||||||||| nGlyAsnValThrIleArgProLeuThrTyrProGlyTyrGluGluPhePheAspVal 290187 : CGGTAACGTGACTATCAGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTT : 290243 189 : TyrAlaAspProTyrTyrTyrValValPheValMetGlnCysMetSerSerPhePheC : 208 ! !..!||| ||| ! :!!|||||| !|||!!.|||:!:! ! !.!..!! GlnLysSerProAlaTyrGluIleValPheCysMetHisCysValTyrValMetIleT 290244 : CAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCA : 290303 209 : ysTyrSerThrCysCysGlyValCysCysIleSerIleGlnSerValLeuHisIleSe : 227 !:!! ! !.!!.!! ! !!:!:!!!! ! !!.! !|||! !!! hrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCy 290304 : CGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTG : 290360 228 : rGlyArgCysAspIleThrSerIleMetIleLysAsnLeu : 240 !|||!:! ! ! ||| !!!!! !:!::!!:!!||| sGlyGlnIleLysIleGlnThrThrArgLeuGluAspLeu 290361 : CGGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTG : 290401 vulgar: NvOr8 17 240 . KQ414889.1 289726 290401 + 272 M 43 129 G 0 9 M 66 198 G 1 0 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289727 290401 272 + . gene_id 1 ; sequence NvOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289727 290401 . + . KQ414889.1 exonerate:protein2genome:local exon 289727 290401 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 289727 290401 272 + . alignment_id 1 ; Query NvOr8 ; Align 289727 18 129 ; Align 289865 61 198 ; Align 290063 128 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 253 Query range: 16 -> 225 Target range: 204224 -> 204854 17 : GluAspPheGluTyrAlaIleGlnIleLeuArgTrpLeuPheGlnProMetGlyIleT : 36 ||||||.!...!||||||! !!::.!!:!!!:! !:!!!!. ! !:!:||| | GluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaT 204225 : GAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGT : 204282 37 : rpProLeu<-><->LysSerAlaAlaTyrProSerPheLeuArgProIleSerIleVa : 53 |||||:!! !!.|||:!! !!!:! !!!!!.!.:!!|||! !|||..! !|| rpProIleProValAsnSerSerProPheThrArgLeuValArgArgIleGluHisVa 204283 : GGCCGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGT : 204339 54 : lIleSerPheTrpSerAlaAlaPheLeuIleIleProGlyIleLeuSerValIleArg : 72 |:!!!!!:::::: ...:!!|||:!!||||||:!!|||! !|||.!!! ! lValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheLeu 204340 : AGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTG : 204396 73 : ValGlnAsnAspPheAlaLeuArgLeuArgLeuIleGlyProValSerPheCysLeuV : 92 !:!!!!.:!! ! !:!!||||||!:!:!!:!!||||||:!! ! !||| !: LysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSerI 204397 : AAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCA : 204456 93 : alThrSerPheLysTyrPheSerPheLeuValLysAsnArgGlnPheTyrAlaTyrLe : 111 !! !! !|||||||||! ! !.!!||| !::!! ! !:!!.!! ! ! !|| leGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSerLe 204457 : TACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGTTT : 204513 112 : uIleAsnValAlaLeuAspTrpArgGluMetLysLysAsnAsnHisAsnArgIleIle : 130 |! !!.!:!! !! !|||||| !!::!! !..:!!.!.||||||:!:||| uAsnThrIleArgArgAspTrp------IleGluAlaThrAspGluAsnArgLeuIle 204514 : GAACACCATCAGACGCGACTGG------ATAGAGGCTACGGATGAAAATCGGTTGATT : 204564 131 : MetLeuArgLysThrGlnIleSerArgPhePheMetThrSerCysSerIleCysMetT : 150 .!.! ! !|||.!!:!!|||.!!||| ! :!! !! !...:!! ! !|||| PheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetT 204565 : TTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGT : 204624 151 : yrLeuSerGlyMetSerTyrAsnIleLeuLeuProLeuThrLysAlaPro<->ThrGl : 168 || !.!!|||:!!!!!|||!..! :!!||||||||| !!:!!.! !! ..! yrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleValTh 204625 : ACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTAAC : 204681 169 : nValGlyAsnValThrPheLysAsnLeuProTyrIleGlyTyrTyrIlePhePheAsp : 187 ! !! !|||||||||.!.!:! ||||||! ! ! !|||::::::||||||::: rProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePheAsn 204682 : ACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaac : 204738 188 : GlnTyrAlaAspProTyrTyrTyrValValPheValMetGlnCysMetSerSerPheP : 207 :!! ! !...||| !!||| ! :!!||||||:!!:!!||| !|||:!!.!!||| GluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheV 204739 : GAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTG : 204798 208 : heCysTyrSerThrCysCysGlyValCysCysIleSerIleGlnSerValLeuHis : 225 !! !|||:!!..! ! !!|||..!||| !!!!:!!! ! !! !||||||||| alThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHis 204799 : TTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCAC : 204854 vulgar: NvOr8 16 225 . KQ414889.1 204224 204854 + 253 M 22 66 G 0 6 M 80 240 G 2 0 M 46 138 G 0 3 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204225 204854 253 + . gene_id 2 ; sequence NvOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204225 204854 . + . KQ414889.1 exonerate:protein2genome:local exon 204225 204854 . + . insertions 9 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 204225 204854 253 + . alignment_id 2 ; Query NvOr8 ; Align 204225 17 66 ; Align 204297 39 240 ; Align 204537 121 138 ; Align 204678 167 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 222 Query range: 17 -> 229 Target range: 284514 -> 285168 18 : AspPheGluTyrAlaIleGlnIleLeuArgTrpLeuPheGlnProMetGlyIleTrpP : 37 |||!:: !|||::!:!!|||!!: !||||||!!!.!!:!!|||!!:|||:!!|||| AspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpP 284515 : GATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGC : 284572 38 : roLeuLys<-><->SerAlaAlaTyrProSerPheLeuArgProIleSerIleValIl : 54 |||||!.. !.!!.!!! !!.!.!! ! ! !:!! ! :!!|| roLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIl 284573 : CTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAAT : 284629 55 : eSerPheTrpSerAlaAlaPheLeuIleIlePro<->GlyIleLeuSerValIleArg : 72 ||||! !!:: ! !!.!||||||:!::!!||| !.!:!:! !!!!|||:!! ! eSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAsp 284630 : CAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGAC : 284686 73 : ValGlnAsnAspPheAlaLeuArgLeuArgLeuIleGlyProValSerPheCysLeuV : 92 ! ..!|||.!!! ! !!:!:!!!:!:!!|||||||||:!!|||||||||:!!: LysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetM 284687 : AAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGA : 284746 93 : alThrSerPheLysTyrPheSerPheLeuValLysAsnArgGlnPheTyrAlaTyrLe : 111 !!.!!:!!.!!||||||!:!! !.!.:!! !:::..! !!:!!.!! ! !! !:! etAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysVa 284747 : TGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGT : 284803 112 : uIleAsnValAlaLeuAspTrpArgGluMetLysLysAsnAsn<-><->HisAsnArg : 128 !! :!!:!! ! !|||||| ! ! ! ..!:!!!:: ......||| lLysAspIleArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArg 284804 : GAAGGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagaga : 284860 129 : IleIleMetLeuArgLysThrGlnIleSerArgPhePheMetThrSerCysSerIleC : 148 |||||| ! !!...!!::!|||.!!|||! !!!. !! !! !|||:!! !! GluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyP 284861 : gagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTT : 284920 149 : ysMetTyrLeuSerGlyMetSerTyrAsnIleLeuLeuProLeuThrLysAlaProTh : 167 !||||||! !.!!|||.!.! !|||!.!! :!!:!!|||||| !! !!.!! !|| heMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgTh 284921 : TCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCAC : 284977 168 : rGln<->ValGlyAsnValThrPheLysAsnLeuProTyrIleGlyTyrTyrIlePhe : 185 |:!! :!!! !|||! !||| ! !:!::!! ! !!!:! !||| ! !.!! rGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeu 284978 : GGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTT : 285034 186 : PheAspGlnTyrAlaAspProTyrTyrTyrValValPheValMetGlnCysMetSerS : 205 .!!|||! ! !.!!..!|||! !:! ! :!!||| !!|||||||||:!!:!!: LeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaA 285035 : CTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCG : 285094 206 : erPhePheCysTyrSerThrCysCysGlyValCysCysIleSerIleGlnSerValLe : 224 !!||| !! ||||||..! ! !|||!.!||| !!:!::!! ! !! !|||:! laPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMe 285095 : CGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCAT : 285151 225 : uHisIleSerGlyArg : 229 !|||:!!!!!|||!:! tHisValCysGlyGln 285152 : GCACGTCTGTGGACAA : 285168 vulgar: NvOr8 17 229 . KQ414889.1 284514 285168 + 222 M 22 66 G 0 6 M 26 78 G 0 3 M 60 180 G 0 6 M 43 129 G 0 3 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284515 285168 222 + . gene_id 3 ; sequence NvOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284515 285168 . + . KQ414889.1 exonerate:protein2genome:local exon 284515 285168 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284515 285168 222 + . alignment_id 3 ; Query NvOr8 ; Align 284515 18 66 ; Align 284587 40 78 ; Align 284668 66 180 ; Align 284854 126 129 ; Align 284986 169 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 218 Query range: 17 -> 241 Target range: 194162 -> 194834 18 : AspPheGluTyrAlaIleGlnIleLeuArgTrpLeuPheGlnProMetGlyIleTrpP : 37 ||| !|||||||||:!!!:!:!! !!:! !|||.!. !|||!!:|||||||||| AspThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpP 194163 : GACACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGC : 194220 38 : roLeuLysSerAlaAlaTyrProSerPheLeuArgProIleSerIleValIleSerPh : 56 || !:!!..!:!! ! ! !!!! !!! !! ! ! !..!! !! !:!: !|| roArgGluAspSerLeuArgAspArgValArgLeuPheAlaGlnThrGlyValValPh 194221 : CAAGGGAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTT : 194277 57 : eTrpSerAlaAlaPheLeuIleIleProGlyIleLeuSerValIleArgValGlnAsn : 75 | ! ! !..!||||||:!::!!||| !:!::!!! !..! ! !! ! .!. eAlaLeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCysGlu 194278 : CGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAG : 194334 76 : AspPheAlaLeuArgLeuArgLeuIleGlyProValSerPheCysLeuValThrSerP : 95 |||.!..!! ! !:!!!:!:!!|||!.! !! ! !||| !!|||:!!.!!! !. AspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleI 194335 : GATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCA : 194394 96 : heLysTyrPheSerPheLeuValLysAsnArgGlnPheTyrAlaTyrLeuIleAsnVa : 114 !!|||!:!!::!!!.!.:!!|||!!.!..!:!:!!.!! !! !|||:!:.!.:! leLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGluMe 194395 : TCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGAT : 194451 115 : lAlaLeuAspTrpArgGluMetLysLysAsnAsnHisAsnArgIleIleMetLeuArg : 133 !! ! !.!.!::|||!!::!! :!! !.!..!.:!!||| :!:||| !!.! tGluThrGlnTyrArgAspVal---GluCysGluGluAspArgGlnValMetThrAsn 194452 : GGAGACGCAGTACAGAGACGTG---GAGTGCGAGGAGGATCGACAGGTGATGACGAAT : 194505 134 : LysThrGlnIleSerArgPhePheMetThrSerCysSerIleCysMetTyrLeuSerG : 153 .!!:!!|||.!!|||||||||! ||| !! !! ! ! ! ||| !.!!! CysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyA 194506 : TGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCG : 194565 154 : lyMetSerTyrAsnIleLeuLeuProLeu<->ThrLysAlaProThrGlnValGlyAs : 171 .!:!! !!|||:!!|||:!!||||||||| :!!:!! ! !..!:!!! !! !|| laLeuProTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGluAspAs 194566 : CTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAA : 194622 172 : nValThrPheLysAsnLeuProTyrIleGlyTyrTyrIlePhePheAspGlnTyrAla : 190 | !||| ! ! !|||||||||:!:.!! !!|||:!!||||||! ! ! ! nSerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAsp 194623 : CAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGAC : 194679 191 : AspProTyrTyrTyrValValPheValMetGlnCysMetSerSerPhePheCysTyrS : 210 ...||| !||| ! :!!..!|||||| !||| :!!! !||| !.!! ! | SerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuS 194680 : TCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGT : 194739 211 : erThrCysCysGlyValCysCysIleSerIleGlnSerValLeuHisIleSerGlyAr : 229 ||||| !||||||:!!! ! !!:!: ! ! ! !:!!:!!||| !!!!||| erThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGlyLe 194740 : CGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTT : 194796 230 : gCysAspIleThrSerIleMetIleLysAsnLeuAsn : 241 !! !!!::!:||||||! !! !!!::!!!.!:!!::! uPheGluValThrSerArgArgMetGluThrIleSer 194797 : GTTCGAAGTGACCAGCAGAAGGATGGAGACTATTTCT : 194834 vulgar: NvOr8 17 241 . KQ414889.1 194162 194834 + 218 M 104 312 G 1 0 M 40 120 G 0 3 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194163 194834 218 + . gene_id 4 ; sequence NvOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194163 194834 . + . KQ414889.1 exonerate:protein2genome:local exon 194163 194834 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 194163 194834 218 + . alignment_id 4 ; Query NvOr8 ; Align 194163 18 312 ; Align 194475 123 120 ; Align 194598 163 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 206 Query range: 17 -> 229 Target range: 278567 -> 279221 18 : AspPheGluTyrAlaIleGlnIleLeuArgTrpLeuPheGlnProMetGlyIleTrpP : 37 |||!:: !|||::!:!!|||!!: !||||||!!!.!!:!!|||!!:|||:!!|||| AspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpP 278568 : GATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGC : 278625 38 : roLeuLys<-><->SerAlaAlaTyrProSerPheLeuArgProIleSerIleValIl : 54 |||||!.. !.!!.!!! !!.!.!! ! ! !:!! ! :!!|| roLeuSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIl 278626 : CTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAAT : 278682 55 : eSerPheTrpSerAlaAlaPheLeuIleIlePro<->GlyIleLeuSerValIleArg : 72 ||||! !!:: ! !!.!||||||:!::!!||| !.!:!:! !!!!|||:!! ! eSerCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAsp 278683 : CAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGAC : 278739 73 : ValGlnAsnAspPheAlaLeuArgLeuArgLeuIleGlyProValSerPheCysLeuV : 92 ! ..!|||.!!! ! !!:!:!!!:!:!!|||||||||:!!||||||||| !: LysThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrM 278740 : AAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGA : 278799 93 : alThrSerPheLysTyrPheSerPheLeuValLysAsnArgGlnPheTyrAlaTyrLe : 111 !!.!!!!!.!!||||||!:!! !.!.:!! !:::..! !!:!!.!! ! !! !:! etAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysVa 278800 : TGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGT : 278856 112 : uIleAsnValAlaLeuAspTrp<-><->ArgGluMetLysLysAsnAsnHisAsnArg : 128 !! !:!!:!! ! !|||||| ! ! ! ! :::............||| lAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArg 278857 : GAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagaga : 278913 129 : IleIleMetLeuArgLysThrGlnIleSerArgPhePheMetThrSerCysSerIleC : 148 |||||| ! !!...!!::!|||.!!|||! !!!. !! !! ! !!:!! !! GluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyP 278914 : gagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTT : 278973 149 : ysMetTyrLeuSerGlyMetSerTyrAsnIleLeuLeuProLeuThrLysAlaProTh : 167 !||||||! !.!!|||:!:! !|||!.! !:!!:!!|||||| ! !!.!! !|| heMetTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgTh 278974 : TCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCAC : 279030 168 : rGln<->ValGlyAsnValThrPheLysAsnLeuProTyrIleGlyTyrTyrIlePhe : 185 |:!! :!!! !|||! !||| ! !:!::!! ! !!!:! !||| ! !.!! rGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeu 279031 : GGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTC : 279087 186 : PheAspGlnTyrAlaAspProTyrTyrTyrValValPheValMetGlnCysMetSerS : 205 .!!|||! ! !.!!..!|||! !:! ! :!!||| !!|||||||||:!!:!!: LeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaA 279088 : CTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCG : 279147 206 : erPhePheCysTyrSerThrCysCysGlyValCysCysIleSerIleGlnSerValLe : 224 !!||| !!! ||||||..! ! !|||!.!||| !!:!:! ! ! !! !|||:! laPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMe 279148 : CGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCAT : 279204 225 : uHisIleSerGlyArg : 229 !|||:!!!!!|||!:! tHisValCysGlyGln 279205 : GCACGTCTGTGGGCAA : 279221 vulgar: NvOr8 17 229 . KQ414889.1 278567 279221 + 206 M 22 66 G 0 6 M 26 78 G 0 3 M 53 159 G 0 6 M 50 150 G 0 3 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278568 279221 206 + . gene_id 5 ; sequence NvOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278568 279221 . + . KQ414889.1 exonerate:protein2genome:local exon 278568 279221 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278568 279221 206 + . alignment_id 5 ; Query NvOr8 ; Align 278568 18 66 ; Align 278640 40 78 ; Align 278721 66 159 ; Align 278886 119 150 ; Align 279039 169 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 203 Query range: 10 -> 240 Target range: 232426 -> 233128 11 : LysAspLeuIleAsnAla<->GluAspPheGluTyrAlaIleGlnIleLeuArgTrpL : 29 :::||| !:!:|||||| ..!|||!:!||||||::!||||||:!: !||||||! ArgAspThrLeuAsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpP 232427 : CGCGACACGTTGAACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGT : 232484 30 : euPheGlnProMetGlyIleTrpPro<-><->LeuLysSerAlaAlaTyrProSerPh : 46 !!.!. !||||||||| !|||||| !:!!!!!:!! ! !! !..!.! heLeuThrProMetGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLe 232485 : TTCTGACACCGATGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACT : 232541 47 : eLeuArgProIleSerIleValIleSerPheTrpSerAlaAlaPheLeuIleIlePro : 65 .||| ! !:!:! !! !:!!! !!!! !! ! ! !! !! !|||:!!||| uLeuAlaLysLeuLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValPro 232542 : ACTCGCGAAACTGTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCG : 232598 66 : GlyIleLeuSerValIleArgValGlnAsnAspPheAlaLeuArgLeuArgLeuIleG : 85 !!||||||! !:!!:!: !! !.!.!....!.!.! ! !|||:!!!:!! !|||| CysIleLeuPheIleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleG 232599 : TGCATTCTGTTCATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCG : 232658 86 : lyProValSerPheCysLeuValThrSerPheLysTyrPheSerPheLeuValLysAs : 104 |||||:!!||| !! !|||:!! !..!!!.!!.|||! !!!!!!.|||!.!||| lyProMetSerHisPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAl 232659 : GTCCTATGAGTCACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGC : 232715 105 : nArgGlnPheTyrAlaTyrLeuIleAsnValAlaLeuAspTrpArgGluMetLysLys : 123 !.!.!..!! ! !! !:!! !.!.||| !! !|||||||||.!.:!:|||||| aAsnAspIleLeuTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLys 232716 : GAACGACATCCTCTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAA : 232772 124 : AsnAsnHisAsnArgIleIleMetLeuArgLysThrGlnIleSerArgPhePheMetT : 143 ! !||| ||| !:!:||||||!:!!!..!!:!!:!!.!!|||! .!. ProValHis---ArgAspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaC 232773 : CCCGTCCAT---CGTGATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTT : 232829 144 : hrSerCysSerIleCysMetTyrLeuSerGlyMetSerTyrAsnIleLeuLeuProLe : 162 !! !..!:!!.!!||||||:!! !.!!! ! ||| !!.!.|||:!! ! !|| ysIleAlaAlaPheCysMetHisThrGlyValGlySerAspGluIleValThrGlyLe 232830 : GCATCGCTGCGTTTTGCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACT : 232886 163 : uThrLysAlaProThrGlnValGlyAsnValThrPheLys<-><->AsnLeuProTyr : 179 | !! !::! !! ! ! |||||||||! !!:!!:!..! ||||||! ! uArgMetSerThrPheTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCys 232887 : TCGTATGAGCACGTTCTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGC : 232943 180 : IleGlyTyrTyrIlePhePheAspGlnTyrAlaAspProTyrTyrTyrValValPheV : 199 ! !||| ! .!..!.||| !..!||| !! ! :!!:!!|||| ThrPheTyrThrLysLeuMetAspThrArgPheSerProThrAsnGluIleMetPheV 232944 : ACGTTCTACACGAAGCTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCG : 233003 200 : alMetGlnCysMetSerSerPhePheCysTyrSerThrCysCysGlyValCysCysIl : 218 ||:!:||||||:!:|||.!!|||.!! !!|||..! ! |||!.!||| !!:! alLeuGlnCysLeuSerGlyPheIleValAsnSerValThrValGlyAlaCysGlyLe 233004 : TTCTACAGTGTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTT : 233060 219 : eSerIleGlnSerValLeuHisIleSerGlyArgCysAspIleThrSerIleMetIle : 237 !.!! ! !!.!:!!||| !!!|||!:! :!!:!:..!! ! ! :!: uGlyAlaValLeuAlaMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeu 233061 : AGGCGCTGTTCTAGCGATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTG : 233117 238 : LysAsnLeu : 240 ! :!!||| AspAspLeu 233118 : GACGATTTG : 233128 vulgar: NvOr8 10 240 . KQ414889.1 232426 233128 + 203 M 6 18 G 0 3 M 21 63 G 0 6 M 89 267 G 1 0 M 48 144 G 0 6 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232427 233128 203 + . gene_id 6 ; sequence NvOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232427 233128 . + . KQ414889.1 exonerate:protein2genome:local exon 232427 233128 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 232427 233128 203 + . alignment_id 6 ; Query NvOr8 ; Align 232427 11 18 ; Align 232448 17 63 ; Align 232517 38 267 ; Align 232784 128 144 ; Align 232934 176 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 190 Query range: 17 -> 240 Target range: 221369 -> 222047 18 : AspPheGluTyrAlaIleGlnIleLeuArgTrpLeuPheGlnProMetGlyIleTrpP : 37 :!! ! :!!! ::!:!:|||:!: !||||||:!!!!.:!!|||!!:|||:!!|||| AsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleGlyValTrpP 221370 : AACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTGGC : 221427 38 : roLeuLysSer<-><->AlaAlaTyrProSerPheLeuArgProIleSerIleValIl : 54 || !..!:!! :!!.!! !!!!!:!||| ! !:!:! !! !|||:! roAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLeuIleAsnValVa 221428 : CAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAACGTCGT : 221484 55 : eSerPheTrpSerAlaAlaPheLeuIleIleProGlyIleLeuSerValIleArgVal : 73 !!!!!:! ! ! !.!!||||||:!::!!||| !!! !|||! !||||||! !! ! lCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyrValIleLeuGlu 221485 : TTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTCGAA : 221541 74 : GlnAsnAspPheAlaLeuArgLeuArgLeuIleGlyProValSerPheCysLeuValT : 93 !.!.||| !! ! !|||:!!!:!|||:!:||||||:!!|||||||||:!!:!!. ValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysValMetA 221542 : GTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGG : 221601 94 : hrSerPheLysTyrPheSerPheLeuValLysAsnArgGlnPheTyrAlaTyrLeuIl : 112 !!! !.!.|||||| ! !!!.:!!:!! ! .!.!.!.!..!! !! !! !:!! laPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCysIleGl 221602 : CATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTGCATCGA : 221658 113 : eAsnValAlaLeuAspTrpArgGluMetLysLysAsnAsnHisAsnArgIleIleMet : 131 ..!:!!! !! !||||||!:!.!.!!:! ! ::!!!. :!!!:! !|||||| uArgIleGluTrpAspTrpLysAsnIleThrTyrSerLys---AspLysAspIleMet 221659 : GCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAG---GATAAGGATATAATG : 221712 132 : LeuArgLysThrGlnIleSerArgPhePheMetThrSerCysSerIleCysMetTyrL : 151 :!!..!!!..!! .!!.!!||| !!.!!:! !! !|||!!!.!!! !|||||| IleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheMetTyrS 221713 : ATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGTACA : 221772 152 : euSerGlyMetSerTyrAsnIleLeuLeuProLeuThr<-><->LysAlaProThrGl : 168 !... ::: ||| ||| !:!!|||!!!!:! ||| !|||.!!|| erGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIleProAlaGl 221773 : GTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGCGCA : 221829 169 : nValGlyAsnValThrPheLysAsnLeuProTyrIleGlyTyrTyrIlePhePheAsp : 187 |! ! |||||||||||| :!! !!:! ! !! .!!.!! !!||| nAspValAsnValThrPheIleProMetValPheProPheSerArgPheIleValAsp 221830 : GGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTCGAT : 221886 188 : GlnTyrAlaAspProTyrTyrTyrValValPheValMetGlnCysMetSerSerPheP : 207 !..!||| !! ! :!!:!!||| !:!:||| !|||:!!.!! !! ThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyAlaL 221887 : ACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTGCTT : 221946 208 : heCysTyrSerThrCysCysGlyValCysCysIleSerIleGlnSerValLeuHisIl : 226 !. :!!|||! ! ! !.!!.!||| !!:!: ! !..!! !!.!:!!||| euMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaValHisAl 221947 : TGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCACGC : 222003 227 : eSerGlyArgCysAspIleThrSerIleMetIleLysAsnLeu : 240 !!!!|||!:! .!.:!: !! !! ! !:!:|||:!!||| aCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeu 222004 : TTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTG : 222047 vulgar: NvOr8 17 240 . KQ414889.1 221369 222047 + 190 M 23 69 G 0 6 M 85 255 G 1 0 M 37 111 G 0 6 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221370 222047 190 + . gene_id 7 ; sequence NvOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221370 222047 . + . KQ414889.1 exonerate:protein2genome:local exon 221370 222047 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221370 222047 190 + . alignment_id 7 ; Query NvOr8 ; Align 221370 18 69 ; Align 221445 41 255 ; Align 221700 127 111 ; Align 221817 164 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 16 -> 240 Target range: 217162 -> 217843 17 : GluAspPheGluTyrAlaIleGlnIleLeuArgTrpLeuPheGlnProMetGlyIleT : 36 ::::::...... ::!|||||| !|||||||||!!.:!!|||||||||:!!| LysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuT 217163 : aaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTT : 217220 37 : rpProLeuLysSerAlaAlaTyrProSer<-><->PheLeuArgProIleSerIleVa : 53 ||||| !..! !!.!!.!! ! !||| .!!||| ! !:!:! !! !!. rpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAl 217221 : GGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGC : 217277 54 : lIleSerPheTrpSerAlaAlaPheLeuIleIleProGlyIleLeuSerValIleArg : 72 !:!!!!!!:! ! ! ! !::!||||||.!!:!!||| !! !:!!! !|||.!!! ! aLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeu 217278 : CTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTC : 217334 73 : ValGlnAsnAspPheAlaLeuArgLeuArgLeuIleGlyProValSerPheCysLeuV : 92 ! ! .!.|||.!! ! !!:!|||!:!|||.!!||||||:!!! !||||||:!!: GluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValM 217335 : GAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGA : 217394 93 : alThrSerPheLysTyrPheSerPheLeuValLysAsnArgGlnPheTyrAlaTyrLe : 111 !!.!!! ! !!||||||!:!|||.!.:!!||| ! !!. !.!..!! !! !! !:! etAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCysVa 217395 : TGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGT : 217451 112 : uIleAsnValAlaLeuAspTrpArgGluMetLysLysAsnAsnHisAsnArgIleIle : 130 !! !!..:!!! !! !|||||||||.!.:!:!:! .!.!!. :!!||| lArgArgIleGluArgAspTrpArgAsnValArgCysGluLys---AspArgGluAla 217452 : GAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAA---GACAGGGAGGCG : 217505 131 : MetLeuArgLysThrGlnIleSerArgPhePheMetThrSerCysSerIleCysMetT : 150 |||:!! !!!..!!.!..!!.!!||| !!.:!: ! !|||!!!.!!! !|||| MetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetT 217506 : ATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGT : 217565 151 : yrLeuSerGlyMetSerTyrAsnIleLeuLeuProLeuThr<-><->LysAlaProTh : 167 || !... ::: ||| ||| !:!!|||:!!!:! !:! !! !:! yrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSe 217566 : ACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATC : 217622 168 : rGlnValGlyAsnValThrPheLysAsnLeuProTyrIleGlyTyrTyrIlePhePhe : 186 !:!! !||||||:!!||||||! ||| !!:! ! ! ! !.!!.!! rGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyrIleIle 217623 : GGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATC : 217679 187 : AspGlnTyrAlaAspProTyrTyrTyrValValPheValMetGlnCysMetSerSerP : 206 ||| ! ! !||| !! ! :!!|||||| !!:!:|||! !!::!!.!! AspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyA 217680 : GATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAG : 217739 207 : hePheCysTyrSerThrCysCysGlyValCysCysIleSerIleGlnSerValLeuHi : 225 !!!. :!!.!!! ! ! !.!!.!||| !!:!::!! ! ! !!.!:!!|| laLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHi 217740 : CTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCA : 217796 226 : sIleSerGlyArgCysAspIleThrSerIleMetIleLysAsnLeu : 240 | !!!!|||!:! !!!::!: !! !! ! !:!::!!:!!||| sAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeu 217797 : TGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTA : 217843 vulgar: NvOr8 16 240 . KQ414889.1 217162 217843 + 172 M 29 87 G 0 6 M 80 240 G 1 0 M 37 111 G 0 6 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217163 217843 172 + . gene_id 8 ; sequence NvOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217163 217843 . + . KQ414889.1 exonerate:protein2genome:local exon 217163 217843 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217163 217843 172 + . alignment_id 8 ; Query NvOr8 ; Align 217163 17 87 ; Align 217256 46 240 ; Align 217496 127 111 ; Align 217613 164 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 10 -> 137 Target range: 303166 -> 303547 11 : LysAspLeuIleAsnAlaGluAspPheGluTyrAlaIleGlnIleLeuArgTrpLeuP : 30 ::!:!!|||! ! !! !:!!|||.!!! |||!.!! !:!! ! !!:!|||:!!. ArgAsnLeuAsnTyrLysLysAspIleValTyrValThrLysHisSerLysTrpIleL 303167 : CGGAATTTGAATTACAAGAAAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCC : 303224 31 : heGlnProMetGlyIleTrpProLeuLysSerAlaAlaTyrProSerPheLeuArgPr : 49 !.:!! !!:!:|||||||||||| ! !! !! !! ! ! !!.!!||||||! ! euLysSerLeuGlyIleTrpProAlaValLeuAspGluThrAlaGlyPheLeuProLy 303225 : TGAAGTCCCTTGGTATTTGGCCAGCCGTGTTGGACGAAACCGCAGGATTCCTACCAAA : 303281 50 : oIleSerIleValIleSerPheTrpSerAlaAlaPheLeuIleIleProGlyIleLeu : 68 !|||!!!|||! !:!!||| !! ! ! ! !||| !:!:|||||| !!|||||| sIleThrIleGlyLeuSerAsnLeuValLeuLeuPheThrValIleProCysIleLeu 303282 : AATCACCATTGGACTCAGTAATTTGGTTCTATTATTCACCGTGATACCGTGTATTCTA : 303338 69 : SerValIleArgValGlnAsnAspPheAlaLeuArgLeuArgLeuIleGlyProValS : 88 !:!!||| !! !|||!!.||| !:!!||||||!:!|||.!!|||! !:!!| HisIleIlePheGluGlnLysAspThrIleIleArgLeuLysLeuPheGlyLeuLeuS 303339 : CACATAATATTCGAACAAAAGGATACGATAATAAGATTGAAACTATTCGGTCTGCTGA : 303398 89 : erPheCysLeuValThrSerPheLysTyrPheSerPheLeuValLysAsnArgGlnPh : 107 |||||||||||:!!:!!! !.!.||||||!:::!!.!! !..!::!!!.! !::!.! erPheCysLeuIleSerLeuMetLysTyrTrpAlaLeuAlaThrArgLysProArgIl 303399 : GTTTCTGTTTGATCTCGTTGATGAAGTATTGGGCCCTCGCCACGCGGAAACCAAGGAT : 303455 108 : eTyrAlaTyrLeuIleAsnValAlaLeuAspTrpArgGluMetLysLysAsnAsnHis : 126 ! ! ! !! !:!! !.!.||| ! !||||||!:!|||:!!!.. !! !||| eLysGluCysIleGluGluValGlnSerAspTrpLysGluValSerValCysIleHis 303456 : CAAAGAATGTATAGAAGAGGTGCAAAGTGATTGGAAAGAGGTGAGTGTTTGCATTCAT : 303512 127 : AsnArgIleIleMetLeuArgLysThrGlnIle : 137 !.. :::||| ||| ..!..!:!! ArgValLeuIleLysAsnArgThrValSerLeu 303513 : AgagtattaattaaaaatcgaactGTTTCATTA : 303547 vulgar: NvOr8 10 137 . KQ414889.1 303166 303547 + 170 M 127 381 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303167 303547 170 + . gene_id 9 ; sequence NvOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 303167 303547 . + . KQ414889.1 exonerate:protein2genome:local exon 303167 303547 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303167 303547 170 + . alignment_id 9 ; Query NvOr8 ; Align 303167 11 381 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 260 -> 331 Target range: 304936 -> 305211 261 : LysPheAlaArgGluIleGluLysLeuLeuAsnGlnMetPheLeuValGluPheValG : 280 !:!|||:!! ! !:!::!!! !:!!|||.!.:!!:!:! !!!!:!!||||||:!!| ArgPheSerAlaIleValGlnThrValLeuGlnGluValCysPheLeuGluPheIleG 304937 : AGATTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTTCTTGGAATTCATTG : 304994 281 : lySerThrPheAsnIleCysLeuLeuValTyrTyrPheMetGly >>>> Target : 295 ||||||||!!. ||||||||||||! !||||||! !!!: ! 62 lySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysIleThr++ 304995 : GTTCTACCTTACTGATATGTCTACTTGAATACTACTGTATAACGgt............ : 305041 296 : Intron 1 >>>> AspPheLysGluAsnAspThrValGlyThrMetThrTyrValL : 309 bp |||!:::!!...!:!:!!||||||.!! !! ||||||..!: ++AspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrV 305042 : .............agGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAG : 305143 310 : euLeuPheIleSerPheThrPheAsnIlePheIlePheCysTyrLeuGlyGluHisLe : 328 !!|||.!.|||||| ! ||||||||||||||||||!!.||||||:!!|||||| !|| alLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLe 305144 : TGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCT : 305200 329 : uThrGluGln : 331 |! !|||:!! uMetGluLys 305201 : TATGGAAAAG : 305211 vulgar: NvOr8 260 331 . KQ414889.1 304936 305211 + 164 M 34 102 5 0 2 I 0 58 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304937 305211 164 + . gene_id 10 ; sequence NvOr8 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 304937 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304937 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 0 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304937 305211 164 + . alignment_id 10 ; Query NvOr8 ; Align 304937 261 102 ; Align 305101 295 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 330 -> 398 Target range: 244655 -> 244948 331 : GlnCysAlaSerAlaGlyAlaAlaValTyrThrMetAspTrpPheArgPheSerAlaL : 350 |||||| !!.!!.!|||! !!.!||||||! !! ||||||!:! !.!. !! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 351 : ysLysSerArgAspLeuPheLeuIleValLeuPheCysGlnArgProValValIleTh : 369 :!!:!! !! !||||||.!!||||||:!! ! ! .!.! ! !|||! !||||| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 370 : rAlaGlyLysMetValAsnPheSerLeuLeuSerPheAlaSer >>>> Target I : 384 ||||||||||:!::!!:!!.!.||||||! !!!!|||!.!..! 89 rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAsp++ 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATgt............. : 244817 385 : ntron 1 >>>> LeuMetLysAlaSerAlaAlaTyrLeuAsnMetLeuTyrLysMe : 398 bp :!!:!:|||.!!.!! !||||||||||||||||||! !:!!|| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMe 244818 : ............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAAAT : 244946 399 : t : 398 | t 244947 : G : 244948 vulgar: NvOr8 330 398 . KQ414889.1 244655 244948 + 132 M 53 159 5 0 2 I 0 85 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244948 132 + . gene_id 11 ; sequence NvOr8 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244656 244814 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244814 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244815 244816 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244815 244903 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244902 244903 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244904 244948 . + . KQ414889.1 exonerate:protein2genome:local exon 244904 244948 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244948 132 + . alignment_id 11 ; Query NvOr8 ; Align 244656 331 159 ; Align 244904 384 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 294 -> 340 Target range: 280091 -> 280229 295 : AspPheLysGluAsnAspThrValGlyThrMetThrTyrValLeuLeuPheIleSerP : 314 !!:!:::!!:!!||||||.!!:!!||||||.!.||||||:!!:!!!!!.!!||||||! GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerL 280092 : GAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTT : 280149 315 : heThrPheAsnIlePheIlePheCysTyrLeuGlyGluHisLeuThrGluGlnCysAl : 333 !.|||||||||:!!||||||.!!||||||:!!|||||| !|||:!!|||||| euThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGlnValPh 280150 : TAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggtatt : 280206 334 : aSerAlaGlyAlaAlaValTyr : 340 ...:::..!:!!||| ePheIleSerSerThrIleTyr 280207 : tttcatttcttcaacGATCTAT : 280229 vulgar: NvOr8 294 340 . KQ414889.1 280091 280229 + 131 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280092 280229 131 + . gene_id 12 ; sequence NvOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 280092 280229 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280229 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280092 280229 131 + . alignment_id 12 ; Query NvOr8 ; Align 280092 295 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 294 -> 340 Target range: 286878 -> 287016 295 : AspPheLysGluAsnAspThrValGlyThrMetThrTyrValLeuLeuPheIleSerP : 314 !!:!:::!!:!!!:!!!:|||:!!||||||!!:|||||| ! !|||.!.:!!|||| GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerP 286879 : GAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTT : 286936 315 : heThrPheAsnIlePheIlePheCysTyrLeuGlyGluHisLeuThrGluGlnCysAl : 333 |||||||||||:!!||||||.!!||||||:!!|||||| !|||:!!|||||| heThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGlnValPh 286937 : TCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggtatt : 286993 334 : aSerAlaGlyAlaAlaValTyr : 340 :::.!!:!!||| ePheIleThrSerThrIleTyr 286994 : tttcattacttcaACGATCTAT : 287016 vulgar: NvOr8 294 340 . KQ414889.1 286878 287016 + 130 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286879 287016 130 + . gene_id 13 ; sequence NvOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 286879 287016 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 287016 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286879 287016 130 + . alignment_id 13 ; Query NvOr8 ; Align 286879 295 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 16 -> 232 Target range: 226918 -> 227575 17 : GluAspPheGluTyrAlaIleGlnIleLeuArgTrpLeuPheGlnProMetGlyIleT : 36 ||| !!!!..!. ::!||||||:!: !|||||||||!!.:!!|||:!:||||||| GluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleT 226919 : GAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCT : 226976 37 : rpPro<-><->LeuLysSerAlaAlaTyrProSerPheLeuArgProIleSerIleVa : 53 ||||| ! !||||||:!! ! !!!!! !!!! ! !:!:! ! ! ! rpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPh 226977 : GGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTT : 227033 54 : lIleSerPheTrpSerAlaAlaPheLeuIleIleProGlyIleLeuSerValIleArg : 72 !:!!!!!!:! ! ! !::!||| !:!::!! !!.!! !|||! !|||:!!! ! eLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrValValLeu 227034 : CCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTA : 227090 73 : ValGlnAsnAspPheAlaLeuArgLeuArgLeuIleGlyProValSerPheCysLeuV : 92 ! ! !!!.! ! ! ! !! !|||!:!:!!|||||||||:!!||||||! ! !: GluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaM 227091 : GAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGA : 227150 93 : alThrSerPheLysTyrPheSerPheLeuValLysAsnArgGlnPheTyrAlaTyrLe : 111 !!:!! !.!!||||||! !! !!!. ! !! ! .!. !.!..!! !! !! !:! etSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysVa 227151 : TGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGT : 227207 112 : uIleAsnValAlaLeuAspTrpArgGluMetLysLysAsnAsnHisAsnArgIleIle : 130 ! !...:!! !! !||||||!:!.!.!!: !:! !! .!.:!!|||! !:!: lGluArgIleLysTrpAspTrpLysAsnIle---ArgTyrLeuGluAspArgAsnVal 227208 : CGAACGGATCAAATGGGACTGGAAGAATATC---AGATACCTGGAGGACAGAAACGTG : 227261 131 : MetLeuArgLysThrGlnIleSerArgPhePheMetThrSerCysSerIleCysMetT : 150 |||:!!! ! ! .!! ! !.!!||| !!.!!:|||! !|||!!!.!!! !:!:! MetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValP 227262 : ATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCT : 227321 151 : yrLeuSerGlyMetSerTyrAsnIleLeuLeuProLeuThr<-><->LysAlaProTh : 167 :! ||| ::: ::: |||:!!:!!|||:!!!.! !..!.! !!|| heSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerValAlaTh 227322 : TCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAAC : 227378 168 : rGlnValGlyAsnValThrPheLysAsnLeuProTyrIleGlyTyrTyrIlePhePhe : 186 |:!!! !|||||| !!:!!:!! .!.:!!|||!:! ! ! |||.!! ! rGluAspGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIleIleAla 227379 : GGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCT : 227435 187 : AspGlnTyrAlaAspProTyrTyrTyrValValPheValMetGlnCysMetSerSerP : 206 ||| ! !..!|||!:! !! ! :!! !!||| !:!:|||! !:!:!!!.!!. AspValArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValThrGlyI 227436 : GACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTA : 227495 207 : hePheCysTyrSerThrCysCysGlyValCysCysIleSerIleGlnSerValLeuHi : 225 !! ! ! :!!.!!..! ! !.!!.!||| !!!!::!! !! ! !!.!:!!|| leValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHi 227496 : TCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCA : 227552 226 : sIleSerGlyArgCysAspIle : 232 | !!!!|||!:! !!::!: sAlaCysGlyGlnMetGluVal 227553 : TGCTTGCGGTCAGATGGAGGTG : 227575 vulgar: NvOr8 16 232 . KQ414889.1 226918 227575 + 128 M 21 63 G 0 6 M 84 252 G 1 0 M 41 123 G 0 6 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226919 227575 128 + . gene_id 14 ; sequence NvOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226919 227575 . + . KQ414889.1 exonerate:protein2genome:local exon 226919 227575 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226919 227575 128 + . alignment_id 14 ; Query NvOr8 ; Align 226919 17 63 ; Align 226988 38 252 ; Align 227240 123 123 ; Align 227369 164 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 284 -> 331 Target range: 219298 -> 219439 285 : IleCysLeuLeuValTyrTyrPheMetGlyAspPheLysGluAsnAspThrValGlyT : 304 ::: ||| ::: :::... !!!:!::|||..!||||||..!..!.!!. ValAsnLeuTyrLysPheGluTyrGln***GluTrpLysSerAsnAspValThrSerA 219299 : gttaatttgtataaatttgaatatcaatAGGAATGGAAATCGAATGATGTAACGAGTG : 219356 305 : hrMetThrTyrValLeuLeuPheIleSerPheThrPheAsnIlePheIlePheCysTy : 323 !!:!!||||||:!!:!!|||.!!||||||.!.|||||||||||||||||||||||||| laValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTy 219357 : CAGTGACATACATCATTCTACTTATATCCCTcactttcaacattttcatattttgcta : 219413 324 : rLeuGlyGluHisLeuThrGluGln : 331 |:!!|||||| !:!!.!!|||||| rIleGlyGluIleValAlaGluGln 219414 : CATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: NvOr8 284 331 . KQ414889.1 219298 219439 + 125 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219299 219439 125 + . gene_id 15 ; sequence NvOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219299 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219299 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219299 219439 125 + . alignment_id 15 ; Query NvOr8 ; Align 219299 285 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 286 -> 331 Target range: 214605 -> 214740 287 : LeuLeuValTyrTyrPheMetGlyAspPheLysGluAsnAspThrValGlyThrMetT : 306 :::::: ::: ...::: :!:!::!!...!|||:!! !..! !|||:!:| IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 307 : hrTyrValLeuLeuPheIleSerPheThrPheAsnIlePheIlePheCysTyrLeuGl : 325 ||||||||:!!|||!:!||||||...|||||||||||||||||||||||||||:!!|| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 326 : yGluHisLeuThrGluGln : 331 ||||! !:!!:!!|||||| yGluLeuValSerGluGln 214721 : CGAGCTTGTGTCTGAACAG : 214740 vulgar: NvOr8 286 331 . KQ414889.1 214605 214740 + 121 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 214740 121 + . gene_id 16 ; sequence NvOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 214740 121 + . alignment_id 16 ; Query NvOr8 ; Align 214606 287 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 280 -> 331 Target range: 301644 -> 301797 281 : SerThrPheAsnIleCysLeuLeuValTyrTyrPheMetGlyAspPheLysGluAsnA : 300 ||||||!!.||| ! !!!||| ! !! .!. !!!:!:::!!.!.!:!| SerThrLeuAsnAlaLysPheLeuArgValIle***Phe***GluTrpGlnAsnSerA 301645 : tctACTTTAAATGCAAAGTTTTTACGAGTAATTTGATTTTAGGAATGGCAAAATAGCG : 301702 301 : spThrValGlyThrMetThrTyrValLeuLeuPheIleSerPheThrPheAsnIlePh : 319 |||||:!!!.!! !:!!|||!:! !! !|||!!.! |||||||||||||||||||| spThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheAsnIlePh 301703 : ACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATATT : 301759 320 : eIlePheCysTyrLeuGlyGluHisLeuThrGluGln : 331 |||||||||||||:!!|||||| !|||:!!|||||| eIlePheCysTyrIleGlyGluIleLeuSerGluGln 301760 : CATATTCTGCTACATCGGCGAGATTCTTTCCGAACAG : 301797 vulgar: NvOr8 280 331 . KQ414889.1 301644 301797 + 119 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301645 301797 119 + . gene_id 17 ; sequence NvOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301645 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301645 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301645 301797 119 + . alignment_id 17 ; Query NvOr8 ; Align 301645 281 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 288 -> 334 Target range: 291350 -> 291488 289 : ValTyrTyrPheMetGlyAspPheLysGluAsnAspThrValGlyThrMetThrTyrV : 308 ...::: !:!.!. !!!:!:::!!...!:!|||:!!:!!|||! !:!:||||||| ThrPheValTyrPhe***GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrV 291351 : acttttgtaTACTTTTAGGAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACG : 291408 309 : alLeuLeuPheIleSerPheThrPheAsnIlePheIlePheCysTyrLeuGlyGluHi : 327 || !|||.!!! !||||||||||||||||||.!.||||||||||||:!!||||||! alThrLeuLeuThrSerPheThrPheAsnIleLeuIlePheCysTyrValGlyGluLe 291409 : TCACTCTCCTCACTTCTTTCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACT : 291465 328 : sLeuThrGluGlnCysAlaSer : 334 !||| !! !||| ::!!!! uLeuLeuGlyGlnValSerThr 291466 : TCTTCTTGGACAGGTAAGTACT : 291488 vulgar: NvOr8 288 334 . KQ414889.1 291350 291488 + 114 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291351 291488 114 + . gene_id 18 ; sequence NvOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 291351 291488 . + . KQ414889.1 exonerate:protein2genome:local exon 291351 291488 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291351 291488 114 + . alignment_id 18 ; Query NvOr8 ; Align 291351 289 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 290 -> 331 Target range: 210651 -> 210774 291 : TyrPheMetGlyAspPheLysGluAsnAspThrValGlyThrMetThrTyrValLeuL : 310 !:!.!!:!: !!!:!:: ! ...!!.||| !!:!!.!!!:!:!!||||||:!!:!!| PheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValL 210652 : TTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTAC : 210709 311 : euPheIleSerPheThrPheAsnIlePheIlePheCysTyrLeuGlyGluHisLeuTh : 329 ||.!!! !||| !!|||||||||||||||||||||||||||:!!|||||| |||.! euLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAl 210710 : TCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGC : 210766 330 : rGluGln : 331 !|||||| aGluGln 210767 : TGAACAg : 210774 vulgar: NvOr8 290 331 . KQ414889.1 210651 210774 + 113 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210652 210774 113 + . gene_id 19 ; sequence NvOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 210652 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210652 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210652 210774 113 + . alignment_id 19 ; Query NvOr8 ; Align 210652 291 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 305 -> 334 Target range: 234836 -> 234923 306 : ThrTyrValLeuLeuPheIleSerPheThrPheAsnIlePheIlePheCysTyrLeuG : 325 :!!||||||:!!:!!!:!:!:|||.!.|||||||||||||||||||||||||||:!!| SerTyrValIleValTyrValSerMetThrPheAsnIlePheIlePheCysTyrIleG 234837 : TCATACGTCATCGTGTACGTGTCCATGACATTtaatatattcatattttgttACATCG : 234894 326 : lyGluHisLeuThrGluGlnCysAlaSer : 334 ||||| |||||||||||| !.!||| lyGluThrLeuThrGluGlnValGlySer 234895 : GAGAGACGCTTACAGAGCAGGTAGGATCA : 234923 vulgar: NvOr8 305 334 . KQ414889.1 234836 234923 + 111 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234837 234923 111 + . gene_id 20 ; sequence NvOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234837 234923 . + . KQ414889.1 exonerate:protein2genome:local exon 234837 234923 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234837 234923 111 + . alignment_id 20 ; Query NvOr8 ; Align 234837 306 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 16 -> 160 Target range: 299677 -> 300114 17 : GluAspPheGluTyrAlaIleGlnIleLeuArgTrpLeuPheGlnProMetGlyIleT : 36 .!.|||.!..!.|||.!!:!:|||!!:! !!:!||||||!!.:!!|||!!:|||:!!| AsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValT 299678 : AATGACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTAT : 299735 37 : rpProLeu<-><-><->LysSerAlaAlaTyrProSerPheLeuArgProIleSerIl : 52 ||! !||| :::|||::! ! ! !.!!:!! ! !:!! !!! rpArgLeuLeuAspGlnArgSerSerLysLeuGluHisLeuValSerIleValLeuMe 299736 : GGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATCGTTCTCAT : 299792 53 : eValIleSerPheTrpSerAlaAlaPheLeuIleIleProGlyIleLeuSerValIle : 71 :..!|||!!!|||! ||| ! !|||:!!:!!:!:|||..! !! !! !:!!.!! tThrIleCysPheSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePhe 299793 : GACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTC : 299849 72 : ArgValGlnAsnAspPheAlaLeuArgLeuArgLeuIleGlyProValSerPheCysL : 91 !!.!:!!!!...!.!. !:!!!:!:!!!:!:!!.!!|||||||||.!!||||||| PheAlaGluLysSerIleHisValLysValLysValPheGlyProValGlyPheCysL 299850 : TTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCC : 299909 92 : euValThrSerPheLysTyrPheSerPheLeuValLysAsnArgGlnPheTyrAlaTy : 110 || !:!!! ! !!||||||! !! !.!!! !:!!!!...! !! !||| ! !! euSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCy 299910 : TCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATG : 299966 111 : rLeuIleAsnValAlaLeuAsp--TrpArgGluMetLysLysAsnAsnHisAsnArgI : 129 !:!! !:!!|||! ! !|||## ..!||| |||..!! !| sIleGlnHisValGluArgAsp##UnkUnkUnkUnkUnkSerAsn---HisArgThrI 299967 : CATCCAACACGTCGAGAGAGACNNNNNNNNNNNNNNNNTTCGAAT---CATCGTACGA : 300022 130 : leIleMetLeuArgLysThrGlnIleSerArgPhePheMetThrSerCysSerIleCy : 148 ||!!::!! ||| ! ..! !!:|||||| !.!.! !||| !|||:!!:!:! leMetLeu---ArgTyrValThrMetSerArgAsnLeuThrThrValCysAlaValPh 300023 : TCATGTTG---AGATACGTGACTATGAGCAGAAATCTGACGACCGTGTGCGCCGTGTT : 300076 149 : sMetTyrLeuSerGlyMetSerTyrAsnIleLeuLeu : 160 !:!:||| !.!!||||||||||||:!!! :!!:!! eLeuTyrAlaGlyGlyMetSerTyrHisThrValMet 300077 : TCTTTACGCAGGTGGTATGTCGTATCACACGGTGATG : 300114 vulgar: NvOr8 16 160 . KQ414889.1 299677 300114 + 110 M 22 66 G 0 9 M 79 237 F 0 2 M 7 21 G 1 0 M 6 18 G 1 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299678 300114 110 + . gene_id 21 ; sequence NvOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299678 300114 . + . KQ414889.1 exonerate:protein2genome:local exon 299678 300114 . + . insertions 9 ; deletions 2 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local similarity 299678 300114 110 + . alignment_id 21 ; Query NvOr8 ; Align 299678 17 66 ; Align 299753 39 237 ; Align 299992 118 21 ; Align 300013 126 18 ; Align 300031 133 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 287 -> 331 Target range: 272815 -> 272947 288 : LeuValTyrTyrPheMetGlyAspPheLysGluAsnAspThrValGlyThrMetThrT : 307 ...:::::: |||... :!:!::! !!::!!||| ! !.!! !! |||| PheIlePhe***PhePhe***GluTrpThrAspHisAspPheGlnSerLeuThrThrT 272816 : ttcattttttaatttttctaggAATGGACTGATCACGATTTTCAGAGTCTAACCACGT : 272873 308 : yrValLeuLeuPheIleSerPheThrPheAsnIlePheIlePheCysTyrLeuGlyGl : 326 || !!:!!:!!.!!||||||.!.|||||||||||||||||| ||||||:!!||||| yrPheMetIleLeuIleSerMetThrPheAsnIlePheIleValCysTyrIleGlyGl 272874 : ATTTCATGATACTTATATCCATgacttttaacatttttatagtATGTTACATCGGCGA : 272930 327 : uHisLeuThrGluGln : 331 | |||||||||::! uIleLeuThrGluArg 272931 : AATATTAACGGAGAGG : 272947 vulgar: NvOr8 287 331 . KQ414889.1 272815 272947 + 103 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272816 272947 103 + . gene_id 22 ; sequence NvOr8 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272816 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272816 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272816 272947 103 + . alignment_id 22 ; Query NvOr8 ; Align 272816 288 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr8 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 329 -> 395 Target range: 277548 -> 277830 330 : GluGlnCysAlaSerAlaGlyAlaAlaValTyrThrMetAspTrpPheArgPheSerA : 349 ..!|||||| !!.!!.!|||! !!.!||||||! !! !:!!|||!:! !!!. !!! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 350 : laLysLysSerArgAspLeuPheLeuIleValLeuPheCysGlnArgProValValIl : 368 !||| ! ! !! !:!!|||.!!||||||:!!! ! ! !... ::: || spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 369 : eThrAlaGlyLysMetValAsnPheSerLeuLeuSerPheAlaSer >>>> Targe : 384 |||||||||||||::::::......|||:!!! !!!!|||!.!..! eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAsp++ 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATgt.......... : 277713 385 : t Intron 1 >>>> LeuMetLysAlaSerAlaAlaTyrLeuAsnMetLeu : 395 84 bp :!!!!:|||.!!!!! !||||||||||||:::||| ++ValIleLysThrThrPheAlaTyrLeuAsnIleLeu 277714 : ...............agGTAATAAAAACCACTTTCgcgtatttaaatattcta : 277830 vulgar: NvOr8 329 395 . KQ414889.1 277548 277830 + 103 M 54 162 5 0 2 I 0 80 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277830 103 + . gene_id 23 ; sequence NvOr8 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277549 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277830 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277830 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277830 103 + . alignment_id 23 ; Query NvOr8 ; Align 277549 330 162 ; Align 277795 384 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 397 Query range: 22 -> 253 Target range: 303193 -> 304827 23 : AlaTyrAlaValGlnLeuThrArgTrpLeuLeuLeuProLeuGlyLeuTrpProThrL : 42 !.!|||!.!..!:!!! !!:!!:!|||:!!||| ! !!||||||:!!||||||.!! ValTyrValThrLysHisSerLysTrpIleLeuLysSerLeuGlyIleTrpProAlaV 303194 : GTTTACGTTACAAAGCACAGCAAATGGATCCTGAAGTCCCTTGGTATTTGGCCAGCCG : 303251 43 : ysSerIleIleTyrGlnLysIleLeuArgProValAlaIleLeuLeuCysLeuPheIl : 61 !! ! ! ! ! ! !.!!|||! ! !:!!.!!||| !||| !! !!!.:! alLeuAspGluThrAlaGlyPheLeuProLysIleThrIleGlyLeuSerAsnLeuVa 303252 : TGTTGGACGAAACCGCAGGATTCCTACCAAAAATCACCATTGGACTCAGTAATTTGGT : 303308 62 : eMetLeuPheValIleIleProLeuCysLeuPheIlePheLeuValValLysAspLeu : 80 !:!:||||||..!:!:||||||! ! !||| !|||.!.!!!! ! !|||||| ! lLeuLeuPheThrValIleProCysIleLeuHisIleIlePheGluGlnLysAspThr 303309 : TCTATTATTCACCGTGATACCGTGTATTCTACACATAATATTCGAACAAAAGGATACG : 303365 81 : GlyIleArgLeuLysLeuIleGlyProLeuGlyPheGlyLeuMetSerLeuPheLysT : 100 !|||||||||||||||.!!|||! !|||.!!||| !!|||!!:||||||.!.|||| IleIleArgLeuLysLeuPheGlyLeuLeuSerPheCysLeuIleSerLeuMetLysT 303366 : ATAATAAGATTGAAACTATTCGGTCTGCTGAGTTTCTGTTTGATCTCGTTGATGAAGT : 303425 101 : yrValValValIleValLysGlnArgAspValAlaSerCysPheLeuGlyMetAlaVa : 119 || !!.!:!! !..!::!:!!! ! :!! !..!|||.!. !! !:!! ! yrTrpAlaLeuAlaThrArgLysProArgIleLysGluCysIleGluGluValGlnSe 303426 : ATTGGGCCCTCGCCACGCGGAAACCAAGGATCAAAGAATGTATAGAAGAGGTGCAAAG : 303482 120 : lAspTrpGlnGlu >>>> Target Intron 1 >>>> LeuSerSerLeuSerA : 129 !||||||:!!||| 938 bp :!!..!||||||!!!| rAspTrpLysGlu++ ++ValGluSerLeuArgA 303483 : TGATTGGAAAGAGgt.........................agGTGGAATCTCTCAGAG : 304450 130 : spArgLysValMetLeuArgAsnAlaLysThrGlyArgLeuLeuThrIleIleCysVa : 148 |||||:!!:!!||||||!:! !!!.!:!!! !|||||| !|||||||||||||||!. spArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIleCysAl 304451 : ATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGC : 304507 149 : lIlePheMetIlePheGlyGlyMetProTyrIleThrValLeuProLeuThrLysGly : 167 !||||||||| ! !||||||! !||| !||||||:!!! !!!!.!!! ||| aIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheAlaThrGly 304508 : CATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCGACCGGA : 304564 168 : Pro<->IleMetArgGlyAsnValSerLeuArgProLeuAlaTyrProSerTyrPheV : 186 !! :!: ..! !||| !!!!:!!!:!||||||!.!||||||!!!||| !! ThrTyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProThrTyrSerA 304565 : ACGTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACCTACAGTG : 304624 187 : alPhePheAsnProGlnIleArgProIleTrpAspTyrValPheValThrHisCysMe : 205 .!!!.|||:!! !|||! !!!!||||||!::!!:! |||!:! !!..!|||||||| laLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheValHisCysMe 304625 : CTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCATTGCAT : 304681 206 : tCysGlyLeuValArgTyrSerValThrCysGlyValTyrSerIleAlaIleLeuCys : 224 |||||||! !|||! !||||||:!!|||..!|||!.!! !.!!:!!||| !|||! ! tCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPhe 304682 : GTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTC : 304738 225 : IleMetHisIleCysSerGlnIleThrIleThrSerSerMetLeuAspArgLeuValG : 244 !! ||| !|||.!!|||||| !|||..!! !||| |||! ! !||||||. AlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAspLeuValA 304739 : GCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGATCTTGTCA : 304798 245 : luAsnPheAspAsnMetLeuLeuGlyLys : 253 !.!:! !!:::: !|||! !||| snSerLysGluSerSerAspLeuAspLys 304799 : ACAGCAAAGAATCATCTGATTTAGATAAA : 304827 vulgar: NvOr9 22 253 . KQ414889.1 303193 304827 + 397 M 101 303 5 0 2 I 0 934 3 0 2 M 45 135 G 0 3 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303194 304827 397 + . gene_id 1 ; sequence NvOr9 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303194 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303194 303496 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304827 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304827 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303194 304827 397 + . alignment_id 1 ; Query NvOr9 ; Align 303194 23 303 ; Align 304435 124 135 ; Align 304573 169 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 375 Query range: 13 -> 336 Target range: 232429 -> 234923 14 : SerAlaIleLysAsnAlaGlnGlyTyrAlaTyrAlaValGlnLeuThrArgTrpLeuL : 33 ..!.!!:!:!!. !.!!!:!! !|||! !|||::!:!!|||:!!!.!||||||!!!| AspThrLeuAsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheL 232430 : GACACGTTGAACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTC : 232487 34 : euLeuProLeuGlyLeuTrpPro<-><->ThrLysSerIleIleTyrGlnLysIleLe : 50 || !|||:!!||| !|||||| |||:!!!!! ! ! !|||:!!:!!|| euThrProMetGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLeuLe 232488 : TGACACCGATGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACT : 232544 51 : uArgProValAlaIleLeuLeuCysLeuPheIleMetLeuPheValIleIleProLeu : 69 | ! !:!! !! !||| !|||! !! !:!:|||:!!! ! !|||:!!|||! ! uAlaLysLeuLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValProCys 232545 : CGCGAAACTGTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGC : 232601 70 : CysLeuPheIlePheLeuValValLysAspLeuGlyIleArgLeuLysLeuIleGlyP : 89 !|||||||||.!.!!!! !! !! !..!|||! ! !|||:!!|||! !||||||| IleLeuPheIleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleGlyP 232602 : ATTCTGTTCATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTC : 232661 90 : roLeuGlyPheGlyLeuMetSerLeuPheLysTyrValValValIleValLysGlnAr : 108 ||:!!.!! ! !||||||.!! !!!.!!.||| ! !:!!:!:!.!||| !!. roMetSerHisPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAs 232662 : CTATGAGTCACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAA : 232718 109 : gAspValAlaSerCysPheLeuGlyMetAlaValAspTrpGlnGluLeuSerSerLeu : 127 !|||:!! !! !||| ! ! !:!! ! !||||||!:!.!.:!!!.!!.!! ! nAspIleLeuTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLysPro 232719 : CGACATCCTCTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCC : 232775 128 : SerAspArgLysValMetLeuArgAsnAlaLysThrGlyArgLeuLeuThrIleIleC : 147 ! !!||| ! :!!||||||!:!||||||||| !||||||! !:!!.!! !|||. ValHisArgAspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleA 232776 : GTCCATCGTGATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCG : 232835 148 : ysValIlePheMetIle<-><->PheGlyGlyMetProTyrIleThrValLeuProLe : 164 .!!.!.!!! !||| ! !!|||..! ! :!!|||! !|||! !:! laAlaPheCysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuArgMe 232836 : CTGCGTTTTGCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTAT : 232892 165 : uThrLysGlyProIleMetArgGlyAsnValSerLeuArgProLeuAlaTyrProSer : 183 !!:!! ! ! !:!: !!.!! !!:! !|||:!! !|||||| !!! ! !!! ! tSerThrPheTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPhe 232893 : GAGCACGTTCTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTC : 232949 184 : TyrPheValPhePheAsnProGlnIleArgProIleTrpAspTyrValPheValThrH : 203 ||| !.!..!.:!! !!::!.!!!!!|||! !!: :!!|||||| !! TyrThrLysLeuMetAspThrArgPheSerProThrAsnGluIleMetPheValLeuG 232950 : TACACGAAGCTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTAC : 233009 204 : isCysMetCysGlyLeuValArgTyrSerValThrCysGlyValTyrSerIleAlaIl : 222 !.|||:!:! !|||!!!:!! ! !!||||||||| |||!.!! !.!!:!!!.! lnCysLeuSerGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAl 233010 : AGTGTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGC : 233066 223 : eLeuCysIleMetHisIleCysSerGlnIleThrIleThrSerSerMetLeuAspArg : 241 !:!! |||||| |||.!!|||:!:!.!:!:..!! !|||! |||||| ! aValLeuAlaMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAsp 233067 : TGTTCTAGCGATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGAT : 233123 242 : LeuValGlu{As} >>>> Target Intron 1 >>>> {n}PheAspAsnMetL : 250 ||||||!!:{ } 1328 bp {!}||| |||||| LeuValAsp{Al}+- +-{a}PheArgAsnMetG 233124 : TTGGTGGAC{GC}ga.........................at{t}tttcgaaatatgc : 234478 251 : euLeuGlyLysIleValThrGlnHisLeuArgPheLeu-----LysPheAlaSerLys : 267 ! !||||||.!!..!.!! :!!:!!..!.!.|||#####!..||| ! !!!!. lnSerGlyLysPheThrAlaIleTyrMetGluMetLeu#####SerPheIleArgAsn 234479 : AAAGTGGCAAGTTTACGGCTATCTACATGGAAATGTTACTTTCAGTTTTATACGGAAT : 234534 268 : LeuGluAspLeuPheAsnGlnIleCysLeuValGluValLeuGlySerThrCysIleI : 287 :!!|||:!!:!!.!.|||! !|||||||||||||||:!!:!!|||!!!|||! ! !! IleGluAsnValMetAsnLeuIleCysLeuValGluLeuValGlyCysThrLeuAsnM 234535 : ATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACGTTGAACA : 234594 288 : leCysPheLeuGlyTyrTyrLeuIleThr >>>> Target Intron 2 >>>> : 297 !:|||.!.|||! !|||||||||:!!||| 189 bp etCysMetLeuGluTyrTyrLeuLeuThr++ ++ 234595 : TGTGCATGCTCGAGTATTATTTACTCACGgt.........................ag : 234811 298 : GluTyrGluGlnArgGluProIleAlaThrValThrTyrPheLeuLeuLeuCysSerP : 316 ||| :!:...:::||| :::||| :!!||| !!:!!:!!! ! |||. Glu---LysSerLysGluLysLeuAla------SerTyrValIleValTyrValSerM 234812 : GAA---AAgtcgaaggaaaaattagCT------TCATACGTCATCGTGTACGTGTCCA : 234861 317 : heValPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuThrGluGlnCysGl : 335 !...!|||||||||||||||...|||||||||||||||! |||||||||||| ! etThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGlnValGl 234862 : TGACATTtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGCAGGTAGG : 234918 336 : uSer : 336 !||| ySer 234919 : ATCA : 234923 vulgar: NvOr9 13 336 . KQ414889.1 232429 234923 + 375 M 27 81 G 0 6 M 112 336 G 0 6 M 92 276 S 0 2 5 0 2 I 0 1324 3 0 2 S 1 1 M 17 51 F 0 5 M 34 102 5 0 2 I 0 185 3 0 2 M 1 3 G 1 0 M 7 21 G 2 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232430 234923 375 + . gene_id 2 ; sequence NvOr9 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232430 233136 . + . KQ414889.1 exonerate:protein2genome:local exon 232430 233136 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 233137 233138 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 233137 234464 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234463 234464 . + . intron_id 0 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local cds 234465 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234465 234623 . + . insertions 0 ; deletions 0 ; frameshifts 5 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234923 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234923 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 232430 234923 375 + . alignment_id 2 ; Query NvOr9 ; Align 232430 14 81 ; Align 232517 41 336 ; Align 232859 153 276 ; Align 234466 246 51 ; Align 234522 263 102 ; Align 234813 297 3 ; Align 234816 299 21 ; Align 234837 308 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 361 Query range: 21 -> 342 Target range: 278570 -> 280229 22 : TyrAlaTyrAlaValGlnLeuThrArgTrpLeuLeuLeuProLeuGlyLeuTrpProT : 41 !:: !|||::!||||||:!!!.!||||||!!!||| !|||:!!|||:!!|||||| TrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProL 278571 : TGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTC : 278628 42 : hrLysSerIleIle<-><->TyrGlnLysIleLeuArgProValAlaIleLeuLeuCy : 58 !!.. ! !:!: ! :!!|||||| ! ! !||| ! |||:!! ! euSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSe 278629 : TCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAG : 278685 59 : sLeuPheIleMetLeuPheValIleIleProLeuCysLeuPheIlePheLeu<->Val : 76 !! !|||:!:!!: !|||:!!:!::!!|||! !..!|||! !! ! ! ||| ! rCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLys 278686 : TTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAA : 278742 77 : ValLysAspLeuGlyIleArgLeuLysLeuIleGlyProLeuGlyPheGlyLeuMetS : 96 ..! ||||||! !! !:!:!!|||:!!||||||||||||.!!||| !! !|||: ThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetA 278743 : ACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGG : 278802 97 : erLeuPheLysTyrValValValIleValLysGlnArgAspValAlaSerCysPheLe : 115 !! !.!!|||||| !:!!:!!!!: !::: !! ! :!!!.!!.!||| ! laThrIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAs 278803 : CAACGATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAA : 278859 116 : uGlyMetAlaValAspTrpGlnGluLeuSerSerLeu<-><-><->SerAspArgLys : 131 !! !!!: !..!||||||... ! !|||! ! ...:::|||::: nAspIleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGlu 278860 : TGACATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagag : 278916 132 : ValMetLeuArgAsnAlaLysThrGlyArgLeuLeuThrIleIleCysValIlePheM : 151 :::||| ! !!:!|||!:!! !||||||! !|||.!!|||.!! !!!.! !|||| IleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheM 278917 : atcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCA : 278976 152 : etIlePheGlyGlyMetProTyrIleThrValLeuProLeu<->ThrLysGlyProIl : 169 || !! !||||||:!: !|||! !.!!|||:!!|||||| .!! ! !! !! etTyrSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGl 278977 : TGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGA : 279033 170 : eMetArgGlyAsnValSerLeuArgProLeuAlaTyrProSerTyrPheValPhePhe : 188 !!:! !! !|||! !!!!:!!||| !!! !|||!:!|||! !||| !! !.!!.!! uIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeu 279034 : GATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTC : 279090 189 : AsnProGlnIleArgProIleTrpAspTyrValPheValThrHisCysMetCysGlyL : 208 :!!|||!::! !!!!||| !::!!: !||| !!! !!!.|||:!!..!!.!! AspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaP 279091 : GATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGT : 279150 209 : euValArgTyrSerValThrCysGlyValTyrSerIleAlaIleLeuCysIleMetHi : 227 !!||| !|||||||||||| !|||!.!! !|||:!: ! !:!!! !:!!||||| heValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHi 279151 : TCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCA : 279207 228 : sIleCysSerGlnIleThrIleThrSerSerMetLeuAspArgLeuValGluAsnPhe : 246 |:!!|||.!!|||.!!! !||| ! !!!!! !||||||!:!|||:!!!!:... ! sValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyVal 279208 : CGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTG : 279264 247 : AspAsnMetLeuLeuGlyLysIleValThrGlnHisLeuArgPheLeuLysPheAlaS : 266 ! ...! ! ! ! !!..! ! !|||!..||| !! !:!! .!!! ! LysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIle---IleGluH 279265 : AAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATC---ATCGAGC : 279321 267 : erLysLeuGluAspLeu{Ph} >>>> Target Intron 1 >>>> {e}AsnGl : 274 ! ! |||:!! |||{ } 678 bp { }:!!.! isHisLeuLysIleLeu{Gl}++ ++{y}AspAs 279322 : ATCATCTGAAGATACTG{GG}gt.........................ag{A}GACGA : 280023 275 : nIleCysLeuValGluValLeuGlySerThrCysIleIleCysPheLeuGlyTyrTyr : 293 .:!!|||! ! !!.!.:!!:!! !:!!! ! ! !.!! !.!.! !..!! ! pLeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerLeuSer 280024 : CTTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGTTGTCA : 280080 294 : LeuIleThrGluTyrGluGlnArgGluProIleAlaThrValThrTyrPheLeuLeuL : 313 :!!.!! !|||!::||||||!.!!!: !!|||!.!||| !!||||||!!.:!!!!!| ValPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheL 280081 : GTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTC : 280140 314 : euCysSerPheValPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuThrGl : 332 || |||!!...!||||||:!!||||||||||||||||||||||||||||||:!!|| euIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGl 280141 : TCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGA : 280197 333 : uGlnCysGluSerIleGlyThrThrAlaTyr : 342 |||| |||...:::||| !||| uGlnValPhePheIleSerSerThrIleTyr 280198 : ACaggtatttttcatttcttcaacGATCTAT : 280229 vulgar: NvOr9 21 342 . KQ414889.1 278570 280229 + 361 M 24 72 G 0 6 M 30 90 G 0 3 M 52 156 G 0 9 M 37 111 G 0 3 M 98 294 G 1 0 M 8 24 S 0 2 5 0 2 I 0 674 3 0 2 S 1 1 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278571 280229 361 + . gene_id 3 ; sequence NvOr9 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278571 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278571 279340 . + . insertions 21 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 280018 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280017 280018 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280019 280229 . + . KQ414889.1 exonerate:protein2genome:local exon 280019 280229 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278571 280229 361 + . alignment_id 3 ; Query NvOr9 ; Align 278571 22 72 ; Align 278649 46 90 ; Align 278742 76 156 ; Align 278907 128 111 ; Align 279021 165 294 ; Align 279315 264 24 ; Align 280020 273 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 335 Query range: 23 -> 244 Target range: 289735 -> 290407 24 : TyrAlaValGlnLeuThrArgTrpLeuLeuLeuProLeuGlyLeuTrpPro<-><->< : 41 |||.!! !!:!!||| !!.!|||:!!||| !|||:!!|||:!!!::||| TyrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrProPheValP 289736 : TACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCGTCT : 289793 42 : ->ThrLysSerIleIleTyrGlnLysIleLeuArgProValAlaIleLeuLeuCysLe : 59 !:!::::!!! !! ! !:!!::!! ! ! !:!! !||||||:!!|||! heSerArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLeuValCysCy 289794 : TTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTG : 289850 60 : uPheIleMetLeuPheValIleIleProLeuCysLeuPheIlePheLeuValValLys : 78 !! |||:!:! !|||:!!|||:!!|||!!! !!! ! !:!!.!.!!! !! !!!. sSerIleLeuGlnPheIleIleValProPheSerHisHisValLeuPheSerAspAsn 289851 : CTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGACAAC : 289907 79 : AspLeuGlyIleArgLeuLysLeuIleGlyProLeuGlyPheGlyLeuMetSerLeuP : 98 |||:!!..!! !:!!||| !:!!||||||||| !||| !!|||! !!!!!!| AspMetAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuThrThrPheP 289908 : GACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCT : 289967 99 : heLysTyrValValValIleValLysGlnArgAspValAlaSerCysPheLeuGlyMe : 117 |||||||| ! ! !!! !:!!||| !! :!!!.! !!||| ! ! !!! heLysTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysValLysHisIl 289968 : TCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACAT : 290024 118 : tAlaValAspTrpGlnGluLeuSerSerLeuSerAspArgLysValMetLeuArgAsn : 136 :! ! !||||||:!! !||| !!..! !..! !!||| :!!||||||||| !! eGluArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMetLeuArgTyr 290025 : CGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGATAC : 290081 137 : AlaLysThrGlyArgLeuLeuThrIleIleCysValIlePheMetIlePheGlyGlyM : 156 !.!! !! !.!!||| !|||! !! !:!:|||!.!||||||:!! !.!.||||||: ValThrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyGlyL 290082 : GTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTC : 290141 157 : etProTyrIleThrValLeuProLeuThrLysGlyProIleMetArgGlyAsnValSe : 175 !! !!|||! !||||||:!!|||||| !..! ! !! !:!!!.!|||||||||!! euSerTyrAsnThrValIleProLeuPheSerLysLysSerValAsnGlyAsnValTh 290142 : TGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGGTAACGTGAC : 290198 176 : rLeuArgProLeuAlaTyrProSerTyrPheValPhePheAsnProGlnIleArgPro : 194 !:!!|||||||||.!!||||||.!!||| ! !||||||:!! !|||! !!!||| rIleArgProLeuThrTyrProGlyTyrGluGluPhePheAspValGlnLysSerPro 290199 : TATCAGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCA : 290255 195 : IleTrpAspTyrValPheValThrHisCysMetCysGlyLeuValArgTyrSerValT : 214 !::!!: !|||||| !! !||||||:!:! !! !:!!:!!! ! !:!:!!| AlaTyrGluIleValPheCysMetHisCysValTyrValMetIleThrAlaAsnIleT 290256 : GCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACATCA : 290315 215 : hrCysGlyValTyrSerIleAlaIleLeuCysIleMetHisIleCysSerGlnIleTh : 233 || !.!!.!||||||:!:.!!! :!!! ! !! |||! !|||.!!||||||! hrMetAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGlnIleLy 290316 : CAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGATTAA : 290372 234 : rIleThrSerSerMetLeuAspArgLeuValGlu : 244 !||| !!!!!!! !|||!!: !|||..!:!! sIleGlnThrThrArgLeuGluAspLeuThrLys 290373 : GATACAAACGACGCGGCTGGAGGATCTGACAAAG : 290407 vulgar: NvOr9 23 244 . KQ414889.1 289735 290407 + 335 M 17 51 G 0 9 M 204 612 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289736 290407 335 + . gene_id 4 ; sequence NvOr9 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289736 290407 . + . KQ414889.1 exonerate:protein2genome:local exon 289736 290407 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289736 290407 335 + . alignment_id 4 ; Query NvOr9 ; Align 289736 24 51 ; Align 289796 41 612 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 317 Query range: 24 -> 249 Target range: 217177 -> 217864 25 : AlaValGlnLeuThrArgTrpLeuLeuLeuProLeuGlyLeuTrpProThrLys<->< : 43 ::!:!!|||! !!.!|||||||||||| !|||:!!||||||||||||!.!..! SerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnSerArgT 217178 : aGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACTCACGTA : 217235 44 : ->SerIleIleTyrGlnLysIleLeuArgProValAlaIleLeuLeuCysLeuPheIl : 61 !!!! !! !! !!:!||||||||| ! !:!! !! ! !||||||! ! !:! hrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTyrGlyLe 217236 : CCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTACGGTTT : 217292 62 : eMetLeuPheValIleIleProLeuCysLeuPheIlePheLeuValValLysAspLeu : 80 :!!: !|||:!!.!!:!!|||! !! !:!!!:!:!:||||||! !|||:!!|||||| uIleSerPheLeuPheValProCysSerMetTyrValPheLeuGluValGluAspLeu 217293 : GATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAGATCTC : 217349 81 : GlyIleArgLeuLysLeuIleGlyProLeuGlyPheGlyLeuMetSerLeuPheLysT : 100 ! !!:!|||||||||.!!||||||||| !||| !!:!!|||:!!!!! !!|||| TyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValMetAlaPheValLysT 217350 : TACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGT : 217409 101 : yrValValValIleValLysGlnArgAspValAlaSerCysPheLeuGlyMetAlaVa : 119 || ! !:!!|||||| ! :!! !|||:!! !..!||| ! ! !!!!:! ! yrTyrSerLeuIleValHisLysAlaAspIleArgGluCysValArgArgIleGluAr 217410 : ATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACG : 217466 120 : lAspTrpGlnGluLeuSerSerLeuSerAspArgLysValMetLeuArgAsnAlaLys : 138 !||||||::!.!.:!!!!!!!! !!.!||||||:!!!.!|||:!! !||||||!!. gAspTrpArgAsnValArgCysGluLysAspArgGluAlaMetIleValAsnAlaAsn 217467 : GGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAAT : 217523 139 : ThrGlyArgLeuLeuThrIleIleCysValIlePheMetIlePheGlyGlyMetProT : 158 !|||||| !|||..!:!!:!!|||..!.!!|||||| ! !||| ::: | PheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheValPheT 217524 : TTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcgtttttt : 217583 159 : yrIleThrValLeuProLeuThrLysGlyProIleMet<-><->ArgGlyAsnValSe : 175 || !!.!:!!|||:!!!:! !||| !|||:!: !.!||||||:!!!! yrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuTh 217584 : attacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTAC : 217640 176 : rLeuArgProLeuAlaTyrProSerTyrPheValPhePheAsnProGlnIleArgPro : 194 !!!!! !||||||!.!!:!|||! ! !.!!.!!:!! !!!:: !! !||| rPheIleProLeuValPheProPheThrLysTyrIleIleAspThrArgTyrThrPro 217641 : CTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCT : 217697 195 : IleTrpAspTyrValPheValThrHisCysMetCysGlyLeuValArgTyrSerValT : 214 ! !!: !|||||| !! !!!.! !!:..!||| !:!!! !:!!.!!:!!| ThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleT 217698 : ACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCA : 217757 215 : hrCysGlyValTyrSerIleAlaIleLeuCysIleMetHisIleCysSerGlnIleTh : 233 ||! !.!!.!! !|||:!:||| ! !! ! :!:||| !|||.!!|||||| hrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGl 217758 : CGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGA : 217814 234 : rIleThrSerSerMetLeuAspArgLeuValGluAsnPheAspAsnMet : 249 !:!: !! !!:! !|||.!.!.!|||:!!!!:..! ! :!!||| uValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgAlaAspMet 217815 : GGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGAGCGGATATG : 217864 vulgar: NvOr9 24 249 . KQ414889.1 217177 217864 + 317 M 18 54 G 0 6 M 128 384 G 0 6 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217178 217864 317 + . gene_id 5 ; sequence NvOr9 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217178 217864 . + . KQ414889.1 exonerate:protein2genome:local exon 217178 217864 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217178 217864 317 + . alignment_id 5 ; Query NvOr9 ; Align 217178 25 54 ; Align 217238 43 384 ; Align 217628 171 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 313 Query range: 24 -> 249 Target range: 221381 -> 222068 25 : AlaValGlnLeuThrArgTrpLeuLeuLeuProLeuGlyLeuTrpProThrLysSerI : 44 ::!|||||||||!:!||||||:!!||| !|||:!!|||:!!||||||!.!..!:!!! SerValGlnLeuSerArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaA 221382 : AGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCA : 221439 45 : leIle<-><->TyrGlnLysIleLeuArgProValAlaIleLeuLeuCysLeuPheIl : 61 !||| :!!!:! !||| ! !:!! !! !:!!:!!|||! ! !:! snIleSerThrValGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLe 221440 : ACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCT : 221496 62 : eMetLeuPheValIleIleProLeuCysLeuPheIlePheLeuValValLysAspLeu : 80 :!!: !|||:!!:!::!!|||! ! !!|||!:!:!:.!!|||! !|||:!!|||:!! uIleThrPheLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspVal 221497 : GATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTC : 221553 81 : GlyIleArgLeuLysLeuIleGlyProLeuGlyPheGlyLeuMetSerLeuPheLysT : 100 !! !|||:!!||||||:!:|||||||||.!!||| !!:!!|||:!!!!!.!.|||| TyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysT 221554 : TACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGT : 221613 101 : yrValValValIleValLysGlnArgAspValAlaSerCysPheLeuGlyMetAlaVa : 119 || !:!!:!!|||:!! ! :!!!.!|||:!! !..!|||.!! ! !!!!:! ! yrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTr 221614 : ATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATG : 221670 120 : lAspTrpGlnGluLeuSerSerLeuSerAspArgLysValMetLeuArgAsnAlaLys : 138 !||||||:!!.!.:!!!!!! !! !!.!|||!:! ! :!!|||:!!..!||||||! pAspTrpLysAsnIleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIle 221671 : GGATTGGAAGAATATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATT : 221727 139 : ThrGlyArgLeuLeuThrIleIleCysValIlePheMetIlePheGlyGlyMetProT : 158 !||||||! !|||! !!!:||||||..!.!!|||||| ! !||| ::: | PheGlyArgArgLeuIleMetIleCysThrPhePheMetTyrSerGlyPheValPheT 221728 : TTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGTACAGTggtttcgtttttt : 221787 159 : yrIleThrValLeuProLeuThrLysGly<-><->ProIleMetArgGlyAsnValSe : 175 || !!.!:!!|||!!!!:! !||| ||| ..! ! ||||||:: yrTyrIleAlaIleProPheSerValGlyLysIleProAlaGlnAspValAsnValTh 221788 : attacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgtgaatgtaac : 221844 176 : rLeuArgProLeuAlaTyrProSerTyrPheValPhePheAsnProGlnIleArgPro : 194 :... |||:!!!.!!:!|||! !! !!.!! !!:!! !!!:! !!!!||| rPheIleProMetValPheProPheSerArgPheIleValAspThrArgTyrSerPro 221845 : ttttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGTCCT : 221901 195 : IleTrpAspTyrValPheValThrHisCysMetCysGlyLeuValArgTyrSerValT : 214 :!! !!: !:!!||| ! !!!. !|||...||| !:!!! !:!!|||:!!| ValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerIleT 221902 : GTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTATTA : 221961 215 : hrCysGlyValTyrSerIleAlaIleLeuCysIleMetHisIleCysSerGlnIleTh : 233 ||! !.!!.!! !|||:!:!.! !:!!! ! !:!!||| !|||.!!|||!!: hrSerAlaAlaCysSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMetGl 221962 : CATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGATGCA : 222018 234 : rIleThrSerSerMetLeuAspArgLeuValGluAsnPheAspAsnMet : 249 !:!: !! !||| !||| ! !.!|||:!!.!...! ! :!!||| nValLeuMetSerTrpLeuLysHisLeuIleAsnGlyArgAlaAspMet 222019 : AGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGCCGGGCGGATATG : 222068 vulgar: NvOr9 24 249 . KQ414889.1 221381 222068 + 313 M 21 63 G 0 6 M 122 366 G 0 6 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221382 222068 313 + . gene_id 6 ; sequence NvOr9 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221382 222068 . + . KQ414889.1 exonerate:protein2genome:local exon 221382 222068 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221382 222068 313 + . alignment_id 6 ; Query NvOr9 ; Align 221382 25 63 ; Align 221451 46 366 ; Align 221823 168 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 307 Query range: 21 -> 244 Target range: 284517 -> 285207 22 : TyrAlaTyrAlaValGlnLeuThrArgTrpLeuLeuLeuProLeuGlyLeuTrpProT : 41 !:: !|||::!||||||:!!!.!||||||!!!||| !|||:!!|||:!!|||||| TrpMetTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProL 284518 : TGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTC : 284575 42 : hrLysSerIleIle<-><->TyrGlnLysIleLeuArgProValAlaIleLeuLeuCy : 58 !!.. ! !:!: ! :!!|||||| ! ! !||| ! |||:!! ! euSerLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSe 284576 : TCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAG : 284632 59 : sLeuPheIleMetLeuPheValIleIleProLeuCysLeuPheIlePheLeu<->Val : 76 !! !|||:!:!!: !|||:!!:!::!!|||! !..!|||! !! ! ! ||| ! rCysPheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLys 284633 : TTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAA : 284689 77 : ValLysAspLeuGlyIleArgLeuLysLeuIleGlyProLeuGlyPheGlyLeuMetS : 96 ..! ||||||! !! !:!:!!|||:!!||||||||||||.!!||| !!:!!|||: ThrGlyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetA 284690 : ACCGGCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGG : 284749 97 : erLeuPheLysTyrValValValIleValLysGlnArgAspValAlaSerCysPheLe : 115 !! !.!!|||||| !:!!:!!||| !::: !! ! :!!!.!..!||| ! laAlaIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLy 284750 : CAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAA : 284806 116 : uGlyMetAlaValAspTrpGlnGluLeuSerSerLeuSer<-><-><->AspArgLys : 131 !! !!!: !!.!||||||... ! !|||! !||| :::|||::: sAspIleArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGlu 284807 : GGACATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagag : 284863 132 : ValMetLeuArgAsnAlaLysThrGlyArgLeuLeuThrIleIleCysValIlePheM : 151 :::||| ! !!:!|||!:!! !||||||! !|||.!!|||.!!|||!.! !|||| IleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheM 284864 : atcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCA : 284923 152 : etIlePheGlyGlyMetProTyrIleThrValLeuProLeu<->ThrLysGlyProIl : 169 || !! !||||||.!. !|||! !||||||:!!|||||| ||| ! !! !! etTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGl 284924 : TGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGA : 284980 170 : eMetArgGlyAsnValSerLeuArgProLeuAlaTyrProSerTyrPheValPhePhe : 188 !!:! !! !|||! !!!!:!!||| !!! !|||!:!|||! !||| !! !.!!.!! uIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeu 284981 : GATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTC : 285037 189 : AsnProGlnIleArgProIleTrpAspTyrValPheValThrHisCysMetCysGlyL : 208 :!!|||!::! !!!!||| !::!!: !||| !!! !!!.|||:!!..!!.!! AspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaP 285038 : GATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGT : 285097 209 : euValArgTyrSerValThrCysGlyValTyrSerIleAlaIleLeuCysIleMetHi : 227 !!|||! !|||||||||||| !|||!.!! !|||:!:||| !:!!! !:!!||||| heValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHi 285098 : TCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCA : 285154 228 : sIleCysSerGlnIleThrIleThrSerSerMetLeuAspArgLeuValGlu : 244 |:!!|||.!!|||.!!! !||| ! !!!!! !||||||!:!||||||!!: sValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAsp 285155 : CGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGAC : 285207 vulgar: NvOr9 21 244 . KQ414889.1 284517 285207 + 307 M 24 72 G 0 6 M 30 90 G 0 3 M 53 159 G 0 9 M 36 108 G 0 3 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284518 285207 307 + . gene_id 7 ; sequence NvOr9 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284518 285207 . + . KQ414889.1 exonerate:protein2genome:local exon 284518 285207 . + . insertions 21 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284518 285207 307 + . alignment_id 7 ; Query NvOr9 ; Align 284518 22 72 ; Align 284596 46 90 ; Align 284689 76 159 ; Align 284857 129 108 ; Align 284968 165 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 301 Query range: 23 -> 242 Target range: 194171 -> 194831 24 : TyrAlaValGlnLeuThrArgTrpLeuLeuLeuProLeuGlyLeuTrpProThrLysS : 43 |||||||||!:!:!!.!!!:! !|||||| !|||:!!|||:!!||||||! !:!!. TyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProArgGluA 194172 : TACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAAGGGAGG : 194229 44 : erIleIleTyrGlnLysIleLeuArgProValAlaIleLeuLeuCysLeuPheIleMe : 62 .! !:!! !.!.!:!:!!! !! ! !!.! !! ! !:!! !!!! !:!:|| spSerLeuArgAspArgValArgLeuPheAlaGlnThrGlyValValPheAlaLeuMe 194230 : ATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTTCGCTTTGAT : 194286 63 : tLeuPheValIleIleProLeuCysLeuPheIlePheLeuValValLysAspLeuGly : 81 |! !|||:!!:!::!!|||! ! :!!!:!! !!:!!!!! ! !:!!|||||| ! tCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCysGluAspLeuThr 194287 : GTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAGGATCTGACG : 194343 82 : IleArgLeuLysLeuIleGlyProLeuGlyPheGlyLeuMetSerLeuPheLysTyrV : 101 ! !:!!|||:!!|||!.! !!! !! !|||.!!|||:!!:!!:!!.!!|||!:! ArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleIleLysPheT 194344 : AGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCATCAAGTTCT : 194403 102 : alValValIleValLysGlnArgAspValAlaSerCysPheLeuGlyMetAlaValAs : 120 !..!:!!||||||!!.::!!:!!!::!! !! !|||.!.|||! !|||! !..!.! rpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGluMetGluThrGl 194404 : GGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGATGGAGACGCA : 194460 121 : pTrpGlnGluLeuSerSerLeuSerAspArgLysValMetLeuArgAsnAlaLysThr : 139 .!::::!!!::!!..!!!! !..!||||||:!!|||||| !!.! !||||||! ! nTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsnCysAlaLysIle 194461 : GTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGCGCGAAAATC : 194517 140 : GlyArgLeuLeuThrIleIleCysValIlePheMetIlePheGlyGlyMetProTyrI : 159 ||||||!!!!!!|||! !:!:! !:!! !.!! ! !|||!.!:!!|||||| GlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrH 194518 : GGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTTTGCCGTACC : 194577 160 : leThrValLeuProLeuThrLysGlyProIleMetArgGlyAsnValSerLeuArg<- : 178 !! !:!!|||||||||! !..!! ! !|||:!:!:!! !:!! !||| !!:! isIleIleLeuProLeuMetSerGluArgIleValLysGluAspAsnSerThrGlnIl 194578 : ACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAACAGTACTCAGAT : 194634 179 : >ProLeuAlaTyrProSerTyrPheValPhePheAsnProGlnIleArgProIleTrp : 196 |||||| !!||| !||| !!!:!||||||||| !:!! ! !||||||!:: eProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAspSerProIleTyr 194635 : ACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGACTCGCCGATTTAC : 194691 197 : AspTyrValPheValThrHisCysMetCysGlyLeuValArgTyrSerValThrCysG : 216 !!: !..!||||||:!!!!. :!! !.!! !:!!! !! |||..!!.!|||| GluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuSerThrAsnCysG 194692 : GAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGTCGACGAATTGTG : 194751 217 : lyValTyrSerIleAlaIleLeuCysIleMetHisIleCysSerGlnIleThrIleTh : 235 ||:!!||||||:!:!.! ! ! !||||||||| !|||.!! !.!! !:!:|| lyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGlyLeuPheGluValTh 194752 : GGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTTGTTCGAAGTGAC : 194808 236 : rSerSerMetLeuAspArgLeu : 242 ||||!!!! !:!!!!:! !:!! rSerArgArgMetGluThrIle 194809 : CAGCAGAAGGATGGAGACTATT : 194831 vulgar: NvOr9 23 242 . KQ414889.1 194171 194831 + 301 M 154 462 G 0 3 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194172 194831 301 + . gene_id 8 ; sequence NvOr9 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194172 194831 . + . KQ414889.1 exonerate:protein2genome:local exon 194172 194831 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194172 194831 301 + . alignment_id 8 ; Query NvOr9 ; Align 194172 24 462 ; Align 194637 178 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 301 Query range: 23 -> 247 Target range: 204236 -> 204914 24 : TyrAlaValGlnLeuThrArgTrpLeuLeuLeuProLeuGlyLeuTrp<-><->ProT : 41 ||||||..!!::!!!..!!:! !:!!||| ! !:!!||| !||| |||. TyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaTrpProIleProV 204237 : TACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGTGGCCGATTCCAG : 204294 42 : hrLysSerIleIleTyrGlnLysIleLeuArgProValAlaIleLeuLeuCysLeuPh : 60 .!!!.||| ! !:! !!:!:!!:!!|||! !:!!! ! !:!!:!! ! || alAsnSerSerProPheThrArgLeuValArgArgIleGluHisValValThrTyrPh 204295 : TGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGTAGTCACCtattt : 204351 61 : eIleMetLeuPheValIleIleProLeuCysLeuPheIlePheLeuValValLysAsp : 79 |:::.........:!!|||:!!||| ! !|||!:!:!:|||||| !! !|||:!! eLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheLeuLysGluLysAsn 204352 : cctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAGAAC : 204408 80 : LeuGlyIleArgLeuLysLeuIleGlyProLeuGlyPheGlyLeuMetSerLeuPheL : 99 ! !||||||||||||:!!:!!||||||:!!! ! ! !! !!!:..!!!!|||| GlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSerIleGlnPhePheL 204409 : GGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCATACAGTTCTTCA : 204468 100 : ysTyrValValValIleValLysGlnArgAspValAlaSerCysPheLeuGlyMetAl : 118 ||||| !|||:!!:!! !::! ! ! :!! !!.! !!!!. ! !!!: ysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSerLeuAsnThrIleAr 204469 : AGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGTTTGAACACCATCAG : 204525 119 : aValAspTrpGlnGluLeuSerSerLeuSerAspArgLysValMetLeuArgAsnAla : 137 ! !|||||| !||| !!!!..! ..!:!!||| !:!!.!.! ! !!!.||| gArgAspTrpIleGluAlaThrAsp---GluAsnArgLeuIlePheArgSerLysAla 204526 : ACGCGACTGGATAGAGGCTACGGAT---GAAAATCGGTTGATTTTCCGCTCGAAAGCG : 204579 138 : LysThrGlyArgLeuLeuThrIleIleCysValIlePheMetIlePheGlyGlyMetP : 157 |||! !|||||| !:!! !:!:|||...!.! ! !||| ! !||||||:!! LysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetTyrGlyGlyGlyLeuC 204580 : AAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGTACGGCGGTGGTTTGT : 204639 158 : roTyrIleThrValLeuProLeuThrLysGlyProIleMetArg<->GlyAsnValSe : 175 !|||! |||:!!||||||||| !!:!||| !!|||:!:! ! ! !||||||!! ysTyrArgThrIleLeuProLeuLeuArgGlyThrIleValThrProAspAsnValTh 204640 : GTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTAACACCTGATAACGTTAC : 204696 176 : rLeuArgProLeuAlaTyrProSerTyrPheValPhePheAsnProGlnIleArgPro : 194 !:!!||||||||| !!! !||| !|||||||||||||||||| !||| ! !||| rIleArgProLeuProCysProValTyrPheValPhePheAsnGluGlnArgSerPro 204697 : CATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaacGAGCAACGTTCGCCG : 204753 195 : IleTrpAspTyrValPheValThrHisCysMetCysGlyLeuValArgTyrSerValT : 214 ! !!::!!: !||||||:!! !!!. !|||..!|||!!!|||! !|||:!!|||! AsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheValThrTyrAlaValI 204754 : AATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTGTTACTTACGCTGTTA : 204813 215 : hrCysGlyValTyrSerIleAlaIleLeuCysIleMetHisIleCysSerGlnIleTh : 233 ! !!|||..!! !.!!!!:..! |||! !:!!:!:||| ||||||..!:!:! leSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAlaCysSerMetLeuAr 204814 : TCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGCGTGCAGCATGCTGAG : 204870 234 : rIleThrSerSerMetLeuAspArgLeuValGluAsnPheAsp : 247 !||| ! !!:!! !:!!:!! !||||||!!:!!. ||| gIleLeuValAsnLysMetAsnAlaLeuValAspLysAlaAsp 204871 : GATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCGGAC : 204914 vulgar: NvOr9 23 247 . KQ414889.1 204236 204914 + 301 M 16 48 G 0 6 M 87 261 G 1 0 M 44 132 G 0 3 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204237 204914 301 + . gene_id 9 ; sequence NvOr9 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204237 204914 . + . KQ414889.1 exonerate:protein2genome:local exon 204237 204914 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 204237 204914 301 + . alignment_id 9 ; Query NvOr9 ; Align 204237 24 48 ; Align 204291 40 261 ; Align 204552 128 132 ; Align 204687 172 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 296 Query range: 262 -> 401 Target range: 224137 -> 224770 263 : LysPheAlaSerLysLeuGluAspLeuPheAsnGlnIleCysLeuValGluValLeuG : 282 !:!||| !!!! ! !||| ! !.!..!.|||:!!! !!!|||||| !!|||| ArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValGluPheLeuG 224138 : AGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGGAATTTCTAG : 224195 283 : lySerThrCysIleIleCysPheLeuGlyTyrTyrLeuIleThr >>>> Target : 297 ||!!!! !! ! !||||||.!!||||||||||||:!!|||..! 84 lyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleVal++ 224196 : GCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTGgt............ : 224242 298 : Intron 1 >>>> GluTyrGluGlnArgGluProIleAlaThrValThrTyrPheL : 311 bp |||:::...... .!. !! !::!.!!||||||||||||: ++GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheI 224243 : .............aggagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCA : 224366 312 : euLeuLeuCysSerPheValPheAsnIlePheIleLeuCysTyrIleGlyGluIleLe : 330 !!|||||| |||......|||||||||||||||...|||||||||||||||:!::! leLeuLeuMetSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuVa 224367 : TACTACTCATGTCtcttactttcaatatttttatattttgttacatAGGAGAGCTGGT : 224423 331 : uThrGluGln >>>> Target Intron 2 >>>> CysGluSerIleGlyThrT : 340 !.!!|||||| 65 bp ||||||...|||||| !. lAlaGluGln++ ++CysGluLysIleGlyGlnV 224424 : AGCTGAAcaggt.........................agtgtgaaaaaattggacaAG : 224518 341 : hrAlaTyrMetIleArgTrpTyrHisLeuSerGlyLysGluAlaArgAsnValValLe : 359 .!:!!||||||||| !||||||!..|||!!!|||!!.:!! !! ! ! !:!!|| alSerTyrMetIleAspTrpTyrArgLeuThrGlyAsnLysLysLeuCysCysIleLe 224519 : TGTCGTACATGATCGACTGGTATCGGTTGACTGGAAATAAGAAACTATGCTGCATTCT : 224575 360 : uIleIleAlaSerThrGlnArgProValValMetThrAlaGlyLysMetValAsnLeu : 378 ||||||||||! !:!!.!. ! !!:!! !:!!|||||||||!!.||||||.!.||| uIleIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeu 224576 : GATAATCGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGAAACATGGTCGAACTG : 224632 379 : SerLeuGlnSerPheThrAsn >>>> Target Intron 3 >>>> ValIleLy : 388 !!!||| !!!||| !:!! 67 bp |||:!!|| CysLeuThrThrPheGlyAsp++ ++ValValLy 224633 : TGTCTAACCACTTTCGGTGACgt.........................agGTTGTCAA : 224729 389 : sAlaSerAlaSerTyrLeuAsnMetLeuArgThrValThr : 401 |.!!:!!!.!:!!!:!||||||:!!|||||||||:!!||| sThrAlaValAlaPheLeuAsnValLeuArgThrLeuThr 224730 : GACAGCTGTCGCATTTTTGAACGTGTTACGAACATTGact : 224770 vulgar: NvOr9 262 401 . KQ414889.1 224137 224770 + 296 M 34 102 5 0 2 I 0 80 3 0 2 M 37 111 5 0 2 I 0 61 3 0 2 M 52 156 5 0 2 I 0 63 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224138 224770 296 + . gene_id 10 ; sequence NvOr9 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224138 224239 . + . KQ414889.1 exonerate:protein2genome:local exon 224138 224239 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224240 224241 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224240 224323 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224322 224323 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224435 224436 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 224435 224499 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 224498 224499 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224500 224655 . + . KQ414889.1 exonerate:protein2genome:local exon 224500 224655 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224656 224657 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224656 224722 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 224721 224722 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 224723 224770 . + . KQ414889.1 exonerate:protein2genome:local exon 224723 224770 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224138 224770 296 + . alignment_id 10 ; Query NvOr9 ; Align 224138 263 102 ; Align 224324 297 111 ; Align 224500 334 156 ; Align 224723 386 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 284 Query range: 60 -> 244 Target range: 208329 -> 208887 61 : IleMetLeuPheValIleIleProLeuCysLeuPheIlePheLeuValValLysAspL : 80 :!::!: !|||:!!:!:|||||| ! !!:!!||| .!!|||||||||:!!|||! LeuLeuGlyPheIleValIleProThrGlyMetPheAlaIleLeuValValGluAspP 208330 : TTGCTCGGTTTCATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATT : 208387 81 : euGlyIleArgLeuLysLeuIleGlyProLeuGlyPheGlyLeuMetSerLeuPheLy : 99 !! ! !!:!||||||:!! !.!! !!|||.!!||| !:!!|||:!!!!! || heTyrAspGlnLeuLysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLy 208388 : TTTACGACCAATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAA : 208444 100 : sTyrValValValIleValLysGlnArgAspValAlaSerCysPheLeuGlyMetAla : 118 |||||||:!!:!!! !|||::::!! !!|||:!! !!.!||| !! ! !:!:! ! sTyrValIleMetThrValArgGluGlyAspIleArgLysCysValGluTyrValGlu 208445 : GTACGTGATCATGACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAG : 208501 119 : ValAspTrpGlnGluLeuSerSerLeuSerAspArgLysValMetLeuArgAsnAlaL : 138 !.!||||||::!.!.:!!..! ! !..!|||||||||:!!|||||| !||||||! AlaAspTrpArgAsnValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaS 208502 : GCTGATTGGAGAAACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGA : 208561 139 : ysThrGlyArgLeuLeuThrIleIleCysValIlePheMetIlePheGlyGlyMetPr : 157 .. !!.!||| !|||! !:!:||||||! ! !|||||| ! ||| ::: erPheAlaArgLysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePh 208562 : GTTTCGCCAGGAAACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaatttt : 208618 158 : oTyrIleThrValLeuProLeuThrLysGlyProIleMetArg<-><->GlyAsnVal : 174 ||| !!.!||||||||||||::!! ! !:!!:!:..! ||||||:!! eTyrTyrIleAlaLeuProLeuThrArgAspLysValValGluGluGlyGlyAsnLeu 208619 : ctattacaTCGCTTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTG : 208675 175 : SerLeuArgProLeuAlaTyrProSerTyrPheValPhePheAsnProGlnIleArgP : 194 !!!! !||| !|||!.!|||||| ! ! !!.!!.!.:!! !!:! !!!!| ThrTyrArgArgLeuValTyrProValProLysPheIleLeuAspValArgTyrSerP 208676 : ACGTACAGAAGGCTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTC : 208735 195 : roIleTrpAspTyrValPheValThrHisCysMetCysGlyLeuValArgTyrSerVa : 213 ||:!: !!: ! !!!:!..!..!!!.! :!!! |||!!!||| !:!!!:!:! roValAsnGluIlePheTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIl 208736 : CTGTGAATGAGATTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATAT : 208792 214 : lThrCysGlyValTyrSerIleAlaIleLeuCysIleMetHisIleCysSerGlnIle : 232 !||| !|||!.!! !.!!:!:||| ||| ! |||||| |||.!!|||:!: eThrValGlyAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeu 208793 : CACGGTTGGGGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTG : 208849 233 : ThrIleThrSerSerMetLeuAspArgLeuValGlu : 244 !||| !! !||| !:!!!!:!:!||||||!!: GlnIleLeuMetSerTrpMetGluLysLeuValAsp 208850 : CAGATTTTGATGTCCTGGATGGAGAAGTTGGTCGAT : 208887 vulgar: NvOr9 60 244 . KQ414889.1 208329 208887 + 284 M 111 333 G 0 6 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208330 208887 284 + . gene_id 11 ; sequence NvOr9 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208330 208887 . + . KQ414889.1 exonerate:protein2genome:local exon 208330 208887 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208330 208887 284 + . alignment_id 11 ; Query NvOr9 ; Align 208330 61 333 ; Align 208669 172 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 268 Query range: 24 -> 249 Target range: 226933 -> 227620 25 : AlaValGlnLeuThrArgTrpLeuLeuLeuProLeuGlyLeuTrpProThr<-><->L : 42 ::!:!!||||||!.!|||||||||||| !|||||||||:!!||||||:!! | SerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgL 226934 : AGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCA : 226991 43 : ysSerIleIleTyrGlnLysIleLeuArgProValAlaIleLeuLeuCysLeuPheIl : 61 ||||| ! ! !!:! !!!! ! !:!! ! !!!!||||||! ! :! ysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLe 226992 : AAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCT : 227048 62 : eMetLeuPheValIleIleProLeuCysLeuPheIlePheLeuValValLysAspLeu : 80 :||| !|||! !:!::!! !! ! !!|||!:!:!: !!|||! !||||||! ! ! uMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAla 227049 : GATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCT : 227105 81 : GlyIleArgLeuLysLeuIleGlyProLeuGlyPheGlyLeuMetSerLeuPheLysT : 100 !! !! !||||||:!!|||||||||:!!..!||| ! !|||||||||.!!|||| TyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuLysT 227106 : TACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGT : 227165 101 : yrValValValIleValLysGlnArgAspValAlaSerCysPheLeuGlyMetAlaVa : 119 || !:!!:!!! !! ! :!! !|||:!! !..!||| !! ! !!!!: ! yrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIleLysTr 227166 : ACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATG : 227222 120 : lAspTrpGlnGluLeuSerSerLeuSerAspArgLysValMetLeuArgAsnAlaLys : 138 !||||||:!!.!.:!!!!!! !|||..!||||||!!.||||||:!!! ! !!||| ! pAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyr 227223 : GGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTAT : 227279 139 : ThrGlyArgLeuLeuThrIleIleCysValIlePheMetIlePheGlyGlyMetProT : 158 !|||||| !|||! !! !||||||..!.!!|||:!:.!! ... ::: : TyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheValPheP 227280 : TACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttt : 227339 159 : yrIleThrValLeuProLeuThrLysGlyProIleMetArg<-><->GlyAsnValSe : 175 :: ! !|||:!!|||:!!!.! ||| !:!! ! ! |||||| !|| heTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSe 227340 : tctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAG : 227396 176 : rLeuArgProLeuAlaTyrProSerTyrPheValPhePheAsnProGlnIleArgPro : 194 |! !! !! !:!! !!!:!|||! ! :!!.!! !:!! !!:: !!!!||| rTyrIleGlnMetProPheProPheProLysIleIleAlaAspValArgTyrSerPro 227397 : TTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCT : 227453 195 : IleTrpAspTyrValPheValThrHisCysMetCysGlyLeuValArgTyrSerValT : 214 .!! !!: ! !!||| !..!!!.! !:!: |||:!!||| !:!!.!!|||| PheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuHisGlyValT 227454 : TTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCA : 227513 215 : hrCysGlyValTyrSerIleAlaIleLeuCysIleMetHisIleCysSerGlnIleTh : 233 ||! !.!!.!! !|||!!:||| !||| ! :!:||| !|||.!!|||!!: hrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGl 227514 : CGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGA : 227570 234 : rIleThrSerSerMetLeuAspArgLeuValGluAsnPheAspAsnMet : 249 !:!: ! !||| !|||! !.!|||:!!!!:..! ! :!!||| uValLeuValSerTrpLeuGlyHisLeuIleAspGlyArgAlaAspMet 227571 : GGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGCAGAGCGGATATG : 227620 vulgar: NvOr9 24 249 . KQ414889.1 226933 227620 + 268 M 17 51 G 0 6 M 130 390 G 0 6 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226934 227620 268 + . gene_id 12 ; sequence NvOr9 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226934 227620 . + . KQ414889.1 exonerate:protein2genome:local exon 226934 227620 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226934 227620 268 + . alignment_id 12 ; Query NvOr9 ; Align 226934 25 51 ; Align 226991 42 390 ; Align 227387 172 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 265 Query range: 23 -> 245 Target range: 274383 -> 275061 24 : TyrAlaValGlnLeuThrArgTrpLeuLeuLeuProLeuGlyLeuTrpProThrLysS : 43 |||::!:!!||||||!.!||||||!!!||| !|||:!!||| !|||||| ! | TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProLeuAlaS 274384 : TACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGTTAGCCT : 274441 44 : er<-><->IleIleTyrGlnLysIleLeuArgProValAlaIleLeuLeuCysLeuPh : 60 || ! ! !!:!:!!::!|||||| !! !::: |||...|||||| !! erProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCysTyrCy 274442 : CGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttgctACTG : 274498 61 : eIleMetLeuPheValIleIleProLeuCysLeuPheIlePheLeuValValLysAsp : 79 !.!!!!:|||! !..!:!!|||||| ! !!! !|||.!.||||||! !:!!..! sPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAspGluSer 274499 : CTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGATGAAAGT : 274555 80 : LeuGlyIleArgLeuLysLeuIleGlyProLeuGlyPheGlyLeuMetSerLeuPheL : 99 ||| !:!:!:!|||||||||:!!|||||||||||| ! !!!!!!!:.!! !.!!! LeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyGlyIleA 274556 : CTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAGGAATTA : 274615 100 : ysTyrValValValIleValLysGlnArgAspValAlaSerCysPheLeuGlyMetAl : 118 !.|||..!..!:!!:!::!!:::...!:!!!::!! !.!!||| ! ! !||| snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 274616 : ATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCACATGCA : 274672 119 : aValAspTrpGlnGluLeuSerSerLeuSerAspArgLysValMetLeuArgAsnAla : 137 !..!||||||::! :!!!!!!!!! !..!|||!:!:!!|||||||||!:!|||||| nThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLysAsnAla 274673 : AACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAGAACGCG : 274729 138 : LysThrGlyArgLeuLeuThrIleIleCysValIlePheMetIlePheGlyGlyMetP : 157 |||! !||||||! !:!!.!!|||.!!|||!.! |||||| !! !|||! !:!: LysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuC 274730 : AAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTGTTCTCT : 274789 158 : roTyrIleThrValLeuProLeuThrLysGlyProIleMetArgGlyAsnVal<-><- : 175 !||| !..!:!! ! !!!!!|||! ! ! !!:!!... !||||||! ! ysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGluThrAr 274790 : GTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGAGACCAG : 274846 176 : >SerLeuArgProLeuAlaTyrProSerTyrPheValPhePheAsnProGlnIleArg : 193 !!!:!!!.! !||| !!! ! !:!!||| !.!! !! !.!.! !!! gThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAspThrSer 274847 : AACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGACACGAGT : 274903 194 : ProIleTrpAspTyrValPheValThrHisCysMetCysGlyLeuValArgTyrSerV : 213 |||! !!: !|||.!!!.!:!!!!.! !:!!! |||!!!:!! ! !!||| ProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerS 274904 : CCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGA : 274963 214 : alThrCysGlyValTyrSerIleAlaIleLeuCysIleMetHisIleCysSerGlnIl : 232 !.!! !|||!.!!:!|||:!!||| !:!!! ! ||| !! !.!!|||:! erAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLe 274964 : GCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTT : 275020 233 : eThrIleThrSerSerMetLeuAspArgLeuValGluAsn : 245 :!:!:!: !! !! ! !:!! !..!!!!|||.!.:!! uSerValLeuMetIleTrpIleThrGluPheValAsnHis 275021 : GAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCAT : 275061 vulgar: NvOr9 23 245 . KQ414889.1 274383 275061 + 265 M 20 60 G 0 6 M 131 393 G 0 6 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274384 275061 265 + . gene_id 13 ; sequence NvOr9 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274384 275061 . + . KQ414889.1 exonerate:protein2genome:local exon 274384 275061 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274384 275061 265 + . alignment_id 13 ; Query NvOr9 ; Align 274384 24 60 ; Align 274450 44 393 ; Align 274849 175 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 256 Query range: 23 -> 243 Target range: 262849 -> 263521 24 : TyrAlaValGlnLeuThrArgTrpLeuLeuLeuProLeuGlyLeuTrpProThrLysS : 43 |||::!:!!|||:!!!.!|||||||||||| !|||:!!||| !|||||| !...: TyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerA 262850 : TACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCG : 262907 44 : erIleIle<-><->TyrGlnLysIleLeuArgProValAlaIleLeuLeuCysLeuPh : 60 !! ||| :!!::!|||:!! !! !:!! !|||:!!:!!|||! !! laSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCy 262908 : CCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTG : 262964 61 : eIleMetLeuPheValIleIleProLeuCysLeuPheIlePheLeuValValLysAsp : 79 !:!!!!:|||! !..!:!!||||||! ! ||| !||| !!|||! !!.!:!!:!! sLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsn 262965 : TCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAAT : 263021 80 : LeuGlyIleArgLeuLysLeuIleGlyProLeuGlyPheGlyLeuMetSerLeuPheL : 99 !!! !!!:!:!|||:!!:!!:!!|||||||||||| !!!!!:!:.!!:!!.!!! PheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleA 263022 : TTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCA : 263081 100 : ysTyrValValValIleValLysGlnArgAspValAlaSerCysPheLeuGlyMetAl : 118 !.|||..! !:!!:!::!! ! ...!:!|||:!! !.!!||| ! ! ! !:!! snTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGl 263082 : ATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCA : 263138 119 : aValAspTrpGlnGluLeuSerSerLeuSerAspArgLysValMetLeuArgAsnAla : 137 !! !|||||| :!!!!!!!!|||..!|||!:!::::!!||||||!:!|||||| nGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAla 263139 : GGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCG : 263195 138 : LysThrGlyArgLeuLeuThrIleIleCysValIlePheMetIlePheGlyGlyMetP : 157 ||| !||||||! !:!!.!! ! !|||!.!||||||||| ! .!! !||| LysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetC 263196 : AAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGT : 263255 158 : roTyrIleThrValLeuProLeuThrLysGlyProIleMetArgGlyAsnValSer<- : 176 ! ! ! !||| ! !!!!!|||! ! ! !||| ! !||||||! !!!! ysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrAr 263256 : GCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAG : 263312 177 : ><->LeuArgProLeuAlaTyrProSerTyrPheValPhePheAsnProGlnIleArg : 193 |||||| !||| !!! !||| !||| ! !.!!.!! !.!.! !.! gIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThrAsn 263313 : AATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAAT : 263369 194 : ProIleTrpAspTyrValPheValThrHisCysMetCysGlyLeuValArgTyrSerV : 213 |||! !!: ! !!.!!!.!|||!!.! !:!!! |||!!!:!! ! !:!!. ProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaT 263370 : CCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGA : 263429 214 : alThrCysGlyValTyrSerIleAlaIleLeuCysIleMetHisIleCysSerGlnIl : 232 .!||| !|||!.!!:!.!!!!:.!! :!!! ! ! ||| !|||.!!|||:! hrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLe 263430 : CAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTT : 263486 233 : eThrIleThrSerSerMetLeuAspArgLeuVal : 243 :!.!:!: !! !||| !:!! ..!!!!||| uAsnValLeuMetSerTrpIleThrGluPheVal 263487 : GAACGTGTTGATGTCCTGGATCACGGAATTCGTG : 263521 vulgar: NvOr9 23 243 . KQ414889.1 262849 263521 + 256 M 22 66 G 0 6 M 130 390 G 0 6 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262850 263521 256 + . gene_id 14 ; sequence NvOr9 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262850 263521 . + . KQ414889.1 exonerate:protein2genome:local exon 262850 263521 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262850 263521 256 + . alignment_id 14 ; Query NvOr9 ; Align 262850 24 66 ; Align 262922 46 390 ; Align 263318 176 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 253 Query range: 273 -> 401 Target range: 301617 -> 302163 274 : GlnIleCysLeuValGluValLeuGlySerThrCysIleIleCysPheLeuGlyTyrT : 293 !!.:!!||| ||| ... ||||||! ! ! ! |||||| !! HisLeuCysAlaValIleLysPheGluSerThrLeuAsnAlaLysPheLeuArgValI 301618 : CATCTCTGCgctgtaattaaatttgaatctACTTTAAATGCAAAGTTTTTACGAGTAA : 301675 294 : yrLeuIleThrGluTyrGluGlnArgGluProIleAlaThrValThrTyrPheLeuLe : 312 !! !.!! !|||!:::!!.!.!!!!!: !!||||||! !:!!|||!:!||| !|| le***Phe***GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLe 301676 : TTTGATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCT : 301732 313 : uLeuCysSerPheValPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuThr : 331 |||| ||||||..!|||||||||||||||!!!|||||||||||||||||||||:!! uLeuThrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSer 301733 : GTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCC : 301789 332 : GluGln >>>> Target Intron 1 >>>> CysGluSerIleGlyThrThrAl : 341 |||||| 80 bp |||.....!||||||:!!.!!:! GluGln++ ++CysSerGlnIleGlySerAlaSe 301790 : GAACAGgt.........................agTGTAGCCAAATTGGTTCAGCATC : 301899 342 : aTyrMetIleArgTrpTyrHisLeuSerGlyLysGluAlaArgAsnValValLeuIle : 360 !||| !||| !||||||:!!||| !!!.!|||..!||| !:!!:!!:!!|||:!! rTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeu 301900 : GTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTT : 301956 361 : IleAlaSerThrGlnArgProValValMetThrAlaGlyLysMetValAsnLeuSerL : 380 ! !!.!! !:!!||| !||| ! !:!:||||||||||||!!::!!:!!||||||| SerValIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerL 301957 : AGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCT : 302016 381 : euGlnSerPheThrAsn >>>> Target Intron 2 >>>> ValIleLysAla : 389 ||.!.!!!|||!:!::! 82 bp |||:!:|||.!! euAsnThrPheSerSer++ ++ValValLysThr 302017 : TGAATACATTCAGCTCTgt.........................agGTGGTGAAAACA : 302125 390 : SerAlaSerTyrLeuAsnMetLeuArgThrValThr : 401 |||!.! !|||||||||:!:||||||||||||||| SerValValTyrLeuAsnLeuLeuArgThrValThr 302126 : TCGGTGGTGTACTTGAATTTACTGCGAACAGTTACA : 302163 vulgar: NvOr9 273 401 . KQ414889.1 301617 302163 + 253 M 60 180 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301618 302163 253 + . gene_id 15 ; sequence NvOr9 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301618 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301618 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302163 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302163 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301618 302163 253 + . alignment_id 15 ; Query NvOr9 ; Align 301618 274 180 ; Align 301878 334 156 ; Align 302116 386 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 252 Query range: 262 -> 401 Target range: 260779 -> 262201 263 : LysPheAlaSerLysLeuGluAspLeuPheAsnGlnIleCysLeuValGluValLeuG : 282 !..||| !|||::::!!||||||:!!.!.|||!:!||||||!!!:!!|||:!!!!! SerPheIleSerArgIleGluAspValMetAsnArgIleCysPheLeuGluLeuPheA 260780 : AGCTTCATATCGCGTATCGAGGATGTGATGAACCGGATATGCTTCCTGGAGTTGTTCA : 260837 283 : lySerThrCysIleIleCysPheLeuGlyTyrTyrLeuIleThr >>>> Target : 297 !!!!!||| !||||||.!.||||||||||||:!!:!!! ! 85 rgCysThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeuMet++ 260838 : GGTGCACTCTGGATATATGTCTACTTGGCTACTATATTCTTATGgt............ : 260884 298 : Intron 1 >>>> GluTyrGluGlnArgGluProIleAlaThrValThrTyrPheL : 311 2 bp |||!::! :!!!:!!!: ! ! ! ! !|||||||||: ++GluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheM 260885 : .............agGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCA : 261776 312 : euLeuLeuCysSerPheValPheAsnIlePheIleLeuCysTyrIleGlyGluIleLe : 330 !!:!!||| :!!.!! !||||||:!!||||||:!!|||||||||||||||||||| etMetLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLe 261777 : TGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACT : 261833 331 : uThrGluGln >>>> Target Intron 2 >>>> CysGluSerIleGlyThrT : 340 |||||||||| 81 bp |||..!!.!:!!||| !. uThrGluGln++ ++CysSerLysValGlyAspV 261834 : AACGGAACAGgt.........................agTGCTCGAAAGTTGGTGACG : 261944 341 : hrAlaTyrMetIleArgTrpTyrHisLeuSerGlyLysGluAlaArgAsnValValLe : 359 .!!.!||||||! !!.!||||||:!!||| !!! !|||... !! !:!!:!!:!!|| alValTyrMetThrAsnTrpTyrTyrLeuProAspLysSerIleLeuAspLeuIleLe 261945 : TTGTTTACATGACAAACTGGTATTATTTACCTGATAAAAGTATCCTTGATTTGATTTT : 262001 360 : uIleIleAla-SerThrGlnArgProValValMetThrAlaGlyLysMetValAsnLe : 378 ||||||||||#..!!.!!::||| !:!! ! !.!!.!||| ! |||...! uIleIleAla#GluAsnArgArgGluIleSerSerAsnValGlyLeuHisValArgAr 262002 : GATCATTGCACGAAAACCGCCGGGAAATTAGTTCAAATGTCGGTTTACACGTTCGGCG : 262059 379 : u{S} >>>> Target Intron 3 >>>> {er}LeuGlnSerPheThrAsnVal : 386 !{|} 71 bp {||} !! !! !.!. !.!.||| g{S}++ +-{er}SerProLeuIlePheGlnVal 262060 : A{T}gt.........................ac{CA}AGTCCGTTGATATTCCAGGTG : 262154 387 : IleLysAlaSerAlaSerTyrLeuAsnMetLeuArgThrValThr : 401 :!!|||.!!:!! !:!!|||||||||:!!|||||| !:!!||| ValLysThrAlaPheAlaTyrLeuAsnLeuLeuArgGlnMetThr 262155 : GTTAAAACTGCTTTCGCGTATCTGAATCTGTTGCGTCAAATGACG : 262201 vulgar: NvOr9 262 401 . KQ414889.1 260779 262201 + 252 M 34 102 5 0 2 I 0 848 3 0 2 M 37 111 5 0 2 I 0 77 3 0 2 M 29 87 F 0 1 M 16 48 S 0 1 5 0 2 I 0 67 3 0 2 S 1 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 260780 262201 252 + . gene_id 16 ; sequence NvOr9 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 260780 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260780 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261845 261846 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 261845 261925 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 261924 261925 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 261926 262062 . + . KQ414889.1 exonerate:protein2genome:local exon 261926 262062 . + . insertions 0 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local splice5 262063 262064 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 262063 262133 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 262132 262133 . + . intron_id 2 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 262134 262201 . + . KQ414889.1 exonerate:protein2genome:local exon 262134 262201 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 260780 262201 252 + . alignment_id 16 ; Query NvOr9 ; Align 260780 263 102 ; Align 261734 297 111 ; Align 261926 334 87 ; Align 262014 363 48 ; Align 262136 380 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 248 Query range: 23 -> 243 Target range: 266637 -> 267309 24 : TyrAlaValGlnLeuThrArgTrpLeuLeuLeuProLeuGlyLeuTrpProThrLysS : 43 |||::!:!!||||||!.!||||||!!!||| !|||:!!||| !|||||| !! !| TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuS 266638 : TACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGT : 266695 44 : erIleIle<-><->TyrGlnLysIleLeuArgProValAlaIleLeuLeuCysLeuPh : 60 ||:!!! ! !:!!::!|||:!! ! !!.! !|||:!!:!!|||! !! erLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCy 266696 : CACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTG : 266752 61 : eIleMetLeuPheValIleIleProLeuCysLeuPheIlePheLeuValValLysAsp : 79 ! !!!:||||||..!:!!||||||! !! !!! !:!! !!|||! !! !:!!..! sSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSer 266753 : CTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGT : 266809 80 : LeuGlyIleArgLeuLysLeuIleGlyProLeuGlyPheGlyLeuMetSerLeuPheL : 99 :!! !!! !:!:!!|||:!!.!!|||||||||.!! ! !!!!!:!:.!! !.!!! IleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleA 266810 : ATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTA : 266869 100 : ysTyrValValValIleValLysGlnArgAspValAlaSerCysPheLeuGlyMetAl : 118 !.|||..!..!:!!:!::!!:::...!:!!!::!! !.!!||| ! ! !||| snTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGl 266870 : ACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCA : 266926 119 : aValAspTrpGlnGluLeuSerSerLeuSerAspArgLysValMetLeuArgAsnAla : 137 !..!||||||::! :!!!!!!!!! !..!|||!:!:!!|||||||||!:!|||||| nThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAla 266927 : AACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCG : 266983 138 : LysThrGlyArgLeuLeuThrIleIleCysValIlePheMetIlePheGlyGlyMetP : 157 !:!! !||||||! !:!!.!!|||.!!|||!.! |||||| !! !|||! !:!: ArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuG 266984 : AGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCG : 267043 158 : roTyrIleThrValLeuProLeuThrLysGlyProIleMetArgGlyAsnValSer<- : 176 !||| !..!:!! ! !!!!!|||! ! ! !!:!: !||||||! !!!! lyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrAr 267044 : GCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAG : 267100 177 : ><->LeuArgProLeuAlaTyrProSerTyrPheValPhePheAsnProGlnIleArg : 193 :!!!.!! !||| !!! ! !! !||| !.!..!! !.!.! !!!! gIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSer 267101 : GATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGC : 267157 194 : ProIleTrpAspTyrValPheValThrHisCysMetCysGlyLeuValArgTyrSerV : 213 |||! !!: !|||.!!|||:!!!!.! !:!:! |||!!!:!! ! !!||| ProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerS 267158 : CCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGA : 267217 214 : alThrCysGlyValTyrSerIleAlaIleLeuCysIleMetHisIleCysSerGlnIl : 232 !..! !|||!.!!:!|||:!!||| !:!!! ! ||| |||.!!|||:! erValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLe 267218 : GCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCT : 267274 233 : eThrIleThrSerSerMetLeuAspArgLeuVal : 243 :!:!:!: !! !! ! !:!! ! ..!!!!||| uSerValLeuMetMetTrpIleLysGluPheVal 267275 : GAGCGTGCTGATGATGTGGATCAAGGAGTTTGTG : 267309 vulgar: NvOr9 23 243 . KQ414889.1 266637 267309 + 248 M 22 66 G 0 6 M 130 390 G 0 6 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266638 267309 248 + . gene_id 17 ; sequence NvOr9 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266638 267309 . + . KQ414889.1 exonerate:protein2genome:local exon 266638 267309 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266638 267309 248 + . alignment_id 17 ; Query NvOr9 ; Align 266638 24 66 ; Align 266710 46 390 ; Align 267106 176 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 247 Query range: 260 -> 342 Target range: 286690 -> 287016 261 : PheLeuLysPheAlaSerLysLeuGluAspLeuPheAsnGlnIleCysLeuValGluV : 280 .!!!!!!..||| !|||:!!:!!|||! |||.!.|||:!!||||||!!!||||||| IlePheSerPheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluV 286691 : ATTTTCAGTTTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGG : 286748 281 : alLeuGlySerThrCysIleIleCysPheLeuGlyTyrTyrLeuIleThr >>>> T : 297 ||:!!|||!!!|||! ! !||||||||||||||||||||||||:!:||| alIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeuThr++ 286749 : TGATTGGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTACTGACGgt...... : 286801 298 : arget Intron 1 >>>> GluTyrGluGlnArgGluProIleAlaThrValThrT : 309 80 bp |||!::||||||!!!||| !!|||!.!|||:!!|||| ++GluTrpGluGlnSerGluThrIleGlyThrIleThrT 286802 : ...................agGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGT : 286915 310 : yrPheLeuLeuLeuCysSerPheValPheAsnIlePheIleLeuCysTyrIleGlyGl : 328 ||! ! !|||||| ||||||..!||||||:!!||||||||||||||||||||||| yrCysThrLeuLeuValSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGl 286916 : ATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGA : 286972 329 : uIleLeuThrGluGlnCysGluSerIleGlyThrThrAlaTyr : 342 |||||||:!!|||||| ||| :::||| !||| uIleLeuSerGluGlnValPhePheIleThrSerThrIleTyr 286973 : AATTCTCTCCGAACaggtatttttcattacttcaACGATCTAT : 287016 vulgar: NvOr9 260 342 . KQ414889.1 286690 287016 + 247 M 36 108 5 0 2 I 0 76 3 0 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286691 287016 247 + . gene_id 18 ; sequence NvOr9 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286691 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286691 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 287016 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 287016 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286691 287016 247 + . alignment_id 18 ; Query NvOr9 ; Align 286691 261 108 ; Align 286879 297 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 206 Query range: 288 -> 386 Target range: 305076 -> 305783 289 : PheLeuGlyTyrTyrLeuIleThrGluTyrGluGlnArgGluProIleAlaThrValT : 308 |||||| |||||| !!!:!::|||...!!!.!. !!:!!::! !..!| PheLeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrT 305077 : TTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAA : 305134 309 : hrTyrPheLeuLeuLeuCysSerPheValPheAsnIlePheIleLeuCysTyrIleGl : 327 ||||| :!!|||||| ||| ! ..!||||||||||||||||||||||||||||| hrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGl 305135 : CATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGG : 305191 328 : yGluIleLeuThrGlu<-> >>>> Target Intron 1 >>>> GlnCysGluS : 336 ||||||||||! !||| 410 bp !! !!...| yGluIleLeuMetGluLys++ -+***SerSerS 305192 : TGAGATTCTTATGGAAAAGgt.........................cgTAGAGCAGTA : 305631 337 : erIleGlyThrThrAlaTyrMetIleArgTrpTyrHisLeuSerGlyLysGluAlaAr : 355 ||:!!||| !:!!..!!:!||||||!!!|||||||||||| !! !||| ! !!. erValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrLysThrIleHi 305632 : GCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTAAGACGATACA : 305688 356 : gAsnValValLeuIleIleAlaSerThrGlnArgProValValMetThrAlaGlyLys : 374 !..!:!!:!!||||||||||||! !:!!...!.!|||!.! !!!:!:!||||||||| sGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSerAlaGlyLys 305689 : TGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAGTGCTGGTAAA : 305745 375 : MetValAsnLeuSerLeuGlnSerPheThrAsnVal : 386 :!:|||:!!|||||||||...!!!||| !|||||| ValValAspLeuSerLeuSerThrPheGlyAsnVal 305746 : GTAGTTGATTTATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: NvOr9 288 386 . KQ414889.1 305076 305783 + 206 M 44 132 G 0 3 5 0 2 I 0 406 3 0 2 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305077 305783 206 + . gene_id 19 ; sequence NvOr9 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305077 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305077 305211 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305621 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305620 305621 . + . intron_id 0 ; splice_site "CG" KQ414889.1 exonerate:protein2genome:local cds 305622 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305622 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305077 305783 206 + . alignment_id 19 ; Query NvOr9 ; Align 305077 289 132 ; Align 305622 333 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 194 Query range: 296 -> 386 Target range: 206050 -> 206401 297 : GluTyrGluGlnArgGluProIleAlaThrValThrTyrPheLeuLeuLeuCysSerP : 316 |||!::|||.!.!.!.!. !!! !|||..!:!!..!|||.!! !|||! ! |||! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 317 : heValPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuThrGluGln >>> : 334 !..!||| !:!!|||||||||||||||||||||:!!:!!|||! !!!:||| ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 335 : > Target Intron 1 >>>> CysGluSerIleGlyThrThrAlaTyrMetIleA : 345 81 bp !.!. !:!:||| !|||:!!! !! !:!:! ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 346 : rgTrpTyrHisLeuSerGlyLysGluAlaArgAsnValValLeuIleIleAlaSerTh : 364 .!||||||!.!||| !!..!!:!.!.||||||::!:!!:!!||||||||||||! !:! snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 365 : rGlnArgProValValMetThrAlaGlyLysMetValAsnLeuSerLeuGlnSerPhe : 383 !.!. !|||:!! !:!:||||||||||||||| !!.!.:!!|||||| |||||| rAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPhe 206334 : TAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTC : 206390 384 : ThrAsnVal : 386 |||:!!||| ThrAspVal 206391 : ACCGATGTA : 206401 vulgar: NvOr9 296 386 . KQ414889.1 206050 206401 + 194 M 37 111 5 0 2 I 0 77 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 194 + . gene_id 20 ; sequence NvOr9 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 194 + . alignment_id 20 ; Query NvOr9 ; Align 206051 297 111 ; Align 206243 334 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 188 Query range: 17 -> 199 Target range: 294669 -> 295227 18 : AsnAlaGlnGlyTyrAlaTyrAlaValGlnLeuThrArgTrpLeuLeuLeuProLeuG : 37 ||| !.!.! ! ||| !!::!:!!:!!! ! !||| !!|||||| !|||:!!| AsnArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleG 294670 : AACAGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCG : 294727 38 : lyLeuTrpPro<-><-><->ThrLysSerIleIleTyrGlnLysIleLeuArgProVa : 53 ||||||||||| !:! ! !!!! !! ! .!.|||:!!||| ! !:! lyLeuTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIl 294728 : GTCTTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAAT : 294784 54 : lAlaIleLeuLeuCysLeuPheIleMetLeuPheValIleIleProLeuCysLeuPhe : 72 ! !||| !! !||| !!!.! !:!:|||||||||:!!:!:|||! ! ! ! !||| eLeuIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPhe 294785 : TCTGATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTC : 294841 73 : IlePheLeuValValLysAspLeuGlyIleArgLeuLysLeuIleGlyProLeuGlyP : 92 ! ! !!! !||||||:::::: :::::!:!!||||||:!:||||||:!! !! CysValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuT 294842 : TGTGTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTAT : 294901 93 : heGlyLeuMetSerLeuPheLysTyrValValValIleValLysGlnArgAspValAl : 111 :!..!:!!:!:|||:!!.!!!:!||| ! !:!!:!!:!!||| !! !! !! yrSerMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLy 294902 : ACTCTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAA : 294958 112 : aSerCysPheLeuGlyMetAlaValAspTrpGlnGluLeuSerSerLeuSerAspArg : 130 ! !|||.!! !! !!!:! ! !||||||:!! !:!!..!!:!! !..! !!||| sHisCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArg 294959 : GCATTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGA : 295015 131 : LysValMetLeuArgAsnAlaLysThrGlyArgLeuLeuThrIleIleCysValIleP : 150 !:!!|||:!!!:!||||||! !..! !!:! !:!!|||:!! !! !..!|||. AlaIleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleI 295016 : GCGATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTA : 295075 151 : heMetIlePheGlyGlyMetProTyrIleThrValLeuProLeuThrLysGlyProIl : 169 !.!!: ! !..!!.!:!! !!||| !.!!:!!:::|||... ...... :! leIleTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLe 295076 : TAATCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTT : 295132 170 : e<->MetArgGlyAsnValSerLeuArgProLeuAlaTyrProSerTyrPheValPhe : 187 : ! !:! !||| !!!!:!!||| !!||| !! !|||.!!||| :!!||| uGluAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPhe 295133 : GGAGAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTC : 295189 188 : PheAsnProGlnIleArgProIleTrpAspTyrVal : 199 ! :!! !! ! !!!!|||! !!::!!: !:!! ValAspAlaTyrSerSerProThrTyrGluIleIle 295190 : GTAGACGCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: NvOr9 17 199 . KQ414889.1 294669 295227 + 188 M 23 69 G 0 9 M 129 387 G 0 3 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294670 295227 188 + . gene_id 21 ; sequence NvOr9 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294670 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294670 295227 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294670 295227 188 + . alignment_id 21 ; Query NvOr9 ; Align 294670 18 69 ; Align 294748 41 387 ; Align 295138 170 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 186 Query range: 261 -> 333 Target range: 210492 -> 210774 262 : LeuLysPheAlaSerLysLeuGluAspLeuPheAsnGlnIleCysLeuValGluValL : 281 !!!!..||| !:!! ! !|||:!!|||.!.:!!:!!|||! |||:!!|||:!!: PheSerPheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGluMetV 210493 : TTCAGTTTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAATGG : 210550 282 : euGlySerThrCysIleIleCysPheLeuGlyTyrTyrLeuIleThr >>>> Targ : 297 !!|||!!!||| ! !!!:|||||||||||||||||| !!!:! ! alGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210551 : TGGGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt......... : 210600 298 : et Intron 1 >>>> GluTyrGluGlnArgGluProIleAlaThrValThrTyrP : 310 66 bp |||!::!!:...!:!!!:||||||::!!:!:!!||||||. ++GluTrpAspSerLysAspProIleSerSerLeuThrTyrI 210601 : ................agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACA : 210703 311 : heLeuLeuLeuCysSerPheValPheAsnIlePheIleLeuCysTyrIleGlyGluIl : 329 !.:!!|||||| !||| !!..!|||||||||||||||!!!|||||||||||||||:! leValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluVa 210704 : TAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGT : 210760 330 : eLeuThrGluGln : 333 :|||.!!|||||| lLeuAlaGluGln 210761 : GTTGGCTGAACAg : 210774 vulgar: NvOr9 261 333 . KQ414889.1 210492 210774 + 186 M 35 105 5 0 2 I 0 62 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210493 210774 186 + . gene_id 22 ; sequence NvOr9 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 210493 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210493 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210493 210774 186 + . alignment_id 22 ; Query NvOr9 ; Align 210493 262 105 ; Align 210664 297 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 181 Query range: 262 -> 337 Target range: 257478 -> 258387 263 : LysPheAlaSerLysLeuGluAspLeuPheAsnGlnIleCysLeuValGluValLeuG : 282 !..||| !||| ! :!!|||!!::!!.!.|||!:!||||||!!!:!!|||:!!!!! SerPheIleSerTyrIleGluGluValMetAsnArgIleCysPheLeuGluLeuPheA 257479 : AGTTTCATATCATATATCGAGGAAGTGATGAACCGAATATGTTTTTTAGAGTTGTTTA : 257536 283 : lySerThrCysIleIleCysPheLeuGlyTyrTyrLeuIleThr >>>> Target : 297 !!!!!||| !||||||.!.||||||||||||:!!:!!.!! 68 rgCysThrLeuAlaIleCysMetLeuGlyTyrTyrIleLeuAla++ 257537 : GATGCACGCTGGCTATATGCATGCTGGGATACTACATTCTTGCGgt............ : 257583 298 : Intron 1 >>>> GluTyrGluGlnArgGluProIleAlaThrValThrTyrPheL : 311 4 bp |||!::... !!::::: :::||||||: ++GluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheM 257584 : .............aggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTA : 258307 312 : euLeuLeuCysSerPheValPheAsnIlePheIleLeuCysTyrIleGlyGluIleLe : 330 !!:!!||| |||... ||||||||||||::::::|||||||||||||||||||| etIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLe 258308 : TGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATT : 258364 331 : uThrGluGlnCysGluSerIle : 337 |||||||||| ...||| uThrGluGlnValProGluIle 258365 : AACAGAACAGGTACCagagatt : 258387 vulgar: NvOr9 262 337 . KQ414889.1 257478 258387 + 181 M 34 102 5 0 2 I 0 680 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 257479 258387 181 + . gene_id 23 ; sequence NvOr9 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 257479 257580 . + . KQ414889.1 exonerate:protein2genome:local exon 257479 257580 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257581 257582 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257581 258264 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258387 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258387 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 257479 258387 181 + . alignment_id 23 ; Query NvOr9 ; Align 257479 263 102 ; Align 258265 297 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 168 Query range: 170 -> 244 Target range: 300183 -> 300405 171 : ArgGlyAsnValSerLeuArgProLeuAlaTyrProSerTyrPheValPhePheAsnP : 190 |||! !||| !!!!! !!:!|||||||||||||||.!!||| ! !|||.!!:!! ArgGluAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspT 300184 : AGGGAGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATA : 300241 191 : roGlnIleArgProIleTrpAspTyrValPheValThrHisCysMetCysGlyLeuVa : 209 !!|||! !!!!|||! !!::!!: |||||| ||||||.!....!.!:!!:! hrGlnThrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIl 300242 : CACAAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGAT : 300298 210 : lArgTyrSerValThrCysGlyValTyrSerIleAlaIleLeuCysIleMetHisIle : 228 !! !|||!:!|||||| !.!!.!||||||:!:||| :!!! !:!!! |||||| eMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIle 300299 : CATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATC : 300355 229 : CysSerGlnIleThrIleThrSerSerMetLeuAspArgLeuValGlu : 244 |||.!!|||||| !||| !! !:!!! |||!!: !||||||||| CysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGlu 300356 : TGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAG : 300405 vulgar: NvOr9 170 244 . KQ414889.1 300183 300405 + 168 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300184 300405 168 + . gene_id 24 ; sequence NvOr9 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 300184 300405 . + . KQ414889.1 exonerate:protein2genome:local exon 300184 300405 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300184 300405 168 + . alignment_id 24 ; Query NvOr9 ; Align 300184 171 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 332 -> 401 Target range: 292389 -> 293248 333 : GlnCysGluSerIleGlyThrThrAlaTyrMetIleArgTrpTyrHisLeuSerGlyL : 352 ||| !!.....!|||!.! !.!!:!!||| ! !..!||||||:!!||| !! !!: GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 353 : ysGluAlaArgAsnValValLeuIleIleAlaSerThrGlnArgProValValMetTh : 371 :!:!!||||||:!!:!!||||||:!::!!|||! !|||:!!!.!|||:!! !:!:|| rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 372 : rAlaGlyLysMetValAsnLeuSerLeuGlnSerPheThrAsn >>>> Target I : 386 ||||||||||!!: !! !|||||||||.!.!!!||| ! ! 652 rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAla++ 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTgt............. : 292551 387 : ntron 1 >>>> ValIleLysAlaSerAlaSerTyrLeuAsnMetLeuArgThrVa : 400 bp |||:!:|||:!!|||!.! !|||:!!||||||||||||||||| ++ValLeuLysSerSerValValTyrMetAsnMetLeuArgThrVa 292552 : ............agGTGCTGAAATCGTCGGTAGTTTACATGAACATGCTACGAACCGT : 293243 401 : lThr : 401 |||| lThr 293244 : CACT : 293248 vulgar: NvOr9 332 401 . KQ414889.1 292389 293248 + 151 M 53 159 5 0 2 I 0 648 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 293248 151 + . gene_id 25 ; sequence NvOr9 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 292390 292548 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292548 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 292549 292550 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 292549 293200 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 293199 293200 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 293201 293248 . + . KQ414889.1 exonerate:protein2genome:local exon 293201 293248 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 293248 151 + . alignment_id 25 ; Query NvOr9 ; Align 292390 333 159 ; Align 293201 386 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 331 -> 401 Target range: 277548 -> 277842 332 : GluGlnCysGluSerIleGlyThrThrAlaTyrMetIleArgTrpTyrHisLeuSerG : 351 ..!||||||:!!!.!:!!||| !..!!.!||||||! !.!||||||:!!||| !!! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 352 : lyLysGluAlaArgAsnValValLeuIleIleAlaSerThrGlnArgProValValMe : 370 !|||!!: !! !|||:!!:!!|||||||||:!!!!!:!!... ::: :: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 371 : tThrAlaGlyLysMetValAsnLeuSerLeuGlnSerPheThrAsn >>>> Targe : 386 :||||||||||||::::::...:::|||:!! ! !!!||| !:!! eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAsp++ 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATgt.......... : 277713 387 : t Intron 1 >>>> ValIleLysAlaSerAlaSerTyrLeuAsnMetLeuArgTh : 399 84 bp |||||||||.!!!!! !:::|||||||||:::|||||| ++ValIleLysThrThrPheAlaTyrLeuAsnIleLeuArgGl 277714 : ...............agGTAATAAAAACCACTTTCgcgtatttaaatattctacgCCA : 277834 400 : rValThr : 401 !..!||| nThrThr 277835 : AACGACG : 277842 vulgar: NvOr9 331 401 . KQ414889.1 277548 277842 + 147 M 54 162 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277842 147 + . gene_id 26 ; sequence NvOr9 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277549 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277842 147 + . alignment_id 26 ; Query NvOr9 ; Align 277549 332 162 ; Align 277795 386 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 296 -> 344 Target range: 219328 -> 219472 297 : GluTyrGluGlnArgGluProIleAlaThrValThrTyrPheLeuLeuLeuCysSerP : 316 |||!:::!!..!!.!!!: !! ::!.!!|||||||||.!!:!!|||||| |||. GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerL 219329 : GAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCC : 219386 317 : heValPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuThrGluGlnCysGl : 335 !....|||||||||||||||...||||||||||||||||||:!!.!!|||||| || euThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGlnValGl 219387 : TcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAggtaga : 219443 336 : uSerIleGlyThrThrAlaTyrMetIle : 344 |:::... ||| :::||| uThrPhePheLysIleAlaLysIleIle 219444 : aacatttttcaaaattgcaaaaattatc : 219472 vulgar: NvOr9 296 344 . KQ414889.1 219328 219472 + 116 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219329 219472 116 + . gene_id 27 ; sequence NvOr9 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219329 219472 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219472 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219329 219472 116 + . alignment_id 27 ; Query NvOr9 ; Align 219329 297 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 262 -> 333 Target range: 263671 -> 264648 263 : LysPheAlaSerLysLeuGluAspLeuPheAsnGlnIleCysLeuValGluValLeuG : 282 !..||| !..!::::!!:!!:!!:!!.!.!:! !||||||!!!||||||:!!!!! SerPheIleAspArgIleLysAsnValMetSerThrIleCysPheValGluLeuPheL 263672 : AGTTTCATAGATCGTATTAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCA : 263729 283 : lySerThrCysIleIleCysPhe >>>> Target Intron 1 >>>> LeuGly : 291 !:!!||| !||||||.!. 764 bp :!! ! ysAlaThrLeuAspIleCysMet-+ +-IleThr 263730 : AGGCTACGCTGGATATATGCATGct.........................atATAACA : 264520 292 : TyrTyrLeuIleThrGluTyrGluGlnArgGluProIleAlaThrValThrTyrPheL : 311 ! !!:!!.!! !|||!::|||...!..::: ..!|||||||||: IleAspValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheM 264521 : ATTGACGTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCA : 264580 312 : euLeuLeuCysSerPheValPheAsnIlePheIleLeuCysTyrIleGlyGluIleLe : 330 !!:!!||| |||.!. ! !|||||||||:!!:!!|||||||||||||||||||| etIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLe 264581 : TGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATT : 264637 331 : uThrGluGln : 333 |||||||||| uThrGluGln 264638 : GACTGAGcag : 264648 vulgar: NvOr9 262 333 . KQ414889.1 263671 264648 + 110 M 27 81 5 0 2 I 0 760 3 0 2 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 263672 264648 110 + . gene_id 28 ; sequence NvOr9 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 263672 263752 . + . KQ414889.1 exonerate:protein2genome:local exon 263672 263752 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263753 263754 . + . intron_id 1 ; splice_site "CT" KQ414889.1 exonerate:protein2genome:local intron 263753 264516 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264515 264516 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 264517 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264517 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 263672 264648 110 + . alignment_id 28 ; Query NvOr9 ; Align 263672 263 81 ; Align 264517 290 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 260 -> 299 Target range: 279903 -> 280020 261 : PheLeuLysPheAlaSerLysLeuGluAspLeuPheAsnGlnIleCysLeuValGluV : 280 .!!!!!!..||| !|||:!!:!!|||! |||.!.|||:!!||||||!!!||||||| IlePheSerPheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluV 279904 : ATTTTCAGTTTTATATCGCAAATCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGG : 279961 281 : alLeuGlySerThrCysIleIleCysPheLeuGlyTyrTyrLeuIleThrGluTyrGl : 299 ||:!!|||!!!|||! ! !|||||||||||| !|||||||||:!!|||! ! || alIleGlyCysThrLeuAsnIleCysPheLeuThrTyrTyrLeuLeuThrValThrGl 279962 : TGATTGGTTGCACGTTGAACATATGCTTTTTGACATATTATTTACTCACGGTAACAGA : 280018 300 : u : 299 | u 280019 : G : 280020 vulgar: NvOr9 260 299 . KQ414889.1 279903 280020 + 109 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 279904 280020 109 + . gene_id 29 ; sequence NvOr9 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 279904 280020 . + . KQ414889.1 exonerate:protein2genome:local exon 279904 280020 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 279904 280020 109 + . alignment_id 29 ; Query NvOr9 ; Align 279904 261 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 296 -> 333 Target range: 272836 -> 272947 297 : GluTyrGluGlnArgGluProIleAlaThrValThrTyrPheLeuLeuLeuCysSerP : 316 |||!:: .!.!.!!!: ! ::! !..!|||||||||:!!:!!||| |||. GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 317 : heValPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuThrGluGln : 333 !....|||||||||||||||::!|||||||||||||||||||||||||||::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGG : 272947 vulgar: NvOr9 296 333 . KQ414889.1 272836 272947 + 107 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 272947 107 + . gene_id 30 ; sequence NvOr9 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 272947 107 + . alignment_id 30 ; Query NvOr9 ; Align 272837 297 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 327 -> 386 Target range: 196633 -> 196810 328 : GluIleLeuThrGluGlnCysGluSerIleGlyThrThrAlaTyrMetIleArgTrpT : 347 ::::!!!!!..!|||:!! !!|||!!!:!!||| !|||:!!|||.!.!!:! !|||| AspLeuPheValGluLysSerGluArgValGlyGluThrSerTyrPheMetProTrpT 196634 : gaTTTATTCGTTGAAAAGAGCGAAAGAGTAGGCGAAACGTCGTACTTCATGCCGTGGT : 196691 348 : yrHisLeuSerGlyLysGluAlaArgAsnValValLeuIleIleAlaSerThrGlnAr : 366 || !!||| !!! ! ! !|||!:!|||:!! ! !|||||| !!!!.!!...!. yrAspLeuProAspAspLeuAlaLysAsnIleArgThrIleIleLeuArgAlaSerHi 196692 : ACGATCTTCCGGACGATTTAGCCAAGAATATAAGAACGATCATACTAAGAGCCAGTCA : 196748 367 : gProValValMetThrAlaGlyLysMetValAsnLeuSerLeuGlnSerPheThrAsn : 385 !||| ! !:!!:!!!.!!.!|||:!! !!:!!||||||||||||:!!||| !:!! sProSerSerLeuSerGlyAlaLysLeuPheAspLeuSerLeuGlnAlaPheCysAsp 196749 : TCCGTCAAGTTTGTCTGGCGCCAAGTTGTTCGATCTTTCGCTTCAAGCATTTTGCGAC : 196805 386 : Val : 386 ||| Val 196806 : GTG : 196810 vulgar: NvOr9 327 386 . KQ414889.1 196633 196810 + 106 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 196634 196810 106 + . gene_id 31 ; sequence NvOr9 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 196634 196810 . + . KQ414889.1 exonerate:protein2genome:local exon 196634 196810 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 196634 196810 106 + . alignment_id 31 ; Query NvOr9 ; Align 196634 328 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 296 -> 332 Target range: 228247 -> 228355 297 : GluTyrGluGlnArgGluProIleAlaThrValThrTyrPheLeuLeuLeuCysSerP : 316 |||!::.!.! !!:!||| !! ! !.!!|||||||||! !||||||! |||| GluTrpAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerP 228248 : GAATGGAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCT : 228305 317 : heValPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuThrGlu : 332 ||...|||||||||||||||...||||||||||||||||||:!!.!!||| heThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGlu 228306 : TTAccttcaatattttcatattttgttaTATAGGAGAAATTGTTGCCGAA : 228355 vulgar: NvOr9 296 332 . KQ414889.1 228247 228355 + 104 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228248 228355 104 + . gene_id 32 ; sequence NvOr9 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 228248 228355 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228355 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228248 228355 104 + . alignment_id 32 ; Query NvOr9 ; Align 228248 297 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 258 -> 337 Target range: 297279 -> 297583 259 : LeuArgPheLeuLysPheAlaSerLysLeuGluAspLeuPheAsnGlnIleCysLeuV : 278 :::.........:::!:!.!!!!!::!:!! !:!! !!!..!. !:!!|||!!!| IleAsnIlePheArgTyrThrArgArgIleLeuAsnAlaLeuGluThrLeuCysPheV 297280 : ataaatattttcaggTACACGAGACGAATCTTGAACGCGTTAGAGACACTATGTTTCG : 297337 279 : alGluValLeuGlySerThrCysIleIleCysPheLeuGlyTyrTyrLeuIleThr : 297 ||||||||||| !|||!:! :!::!:|||.!!! !! ! !! !! !:!! ! alGluValLeuLeuSerSerIleLeuLeuCysLeuCysGluAsnLeuCysValGlu++ 297338 : TGGAAGTACTGCTGTCCAGCATATTGTTGTGTCTTTGCGAGAACCTCTGCGTAGAGgt : 297394 298 : >>>> Target Intron 1 >>>> GluTyrGluGlnArgGluProIleAlaThrV : 307 67 bp !!:::!! !.!!!: !||| ! !| ++GlyTrpLysThrHisAspMetIlePheGlyV 297395 : .........................aggGATGGAAAACTCACGATATGATTTTTGGGG : 297491 308 : alThrTyrPheLeuLeuLeuCysSerPheValPheAsnIlePheIleLeuCysTyrIl : 326 ||||| ! ! !!!!:!! !|||.!!..!||||||||||||:!!||||||:!! alThrIleGlyGlyPheMetLeuSerIleThrPheAsnIlePheValLeuCysHisAl 297492 : TAACGATCGGCGGTTTCATGCTTTCGATCACTTTTAATATATTCGTATTATGTCATGC : 297548 327 : eGlyGluIleLeuThrGluGlnCysGluSerIle : 337 !||||||:!!|||..!|||:!! !!.!:!: aGlyGluLeuLeuValGluGluValProLysVal 297549 : AGGTGAACTTCTTGTCGAGGAGGTACCGAAAGTG : 297583 vulgar: NvOr9 258 337 . KQ414889.1 297279 297583 + 104 M 38 114 5 0 2 I 0 63 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297280 297583 104 + . gene_id 33 ; sequence NvOr9 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 297280 297393 . + . KQ414889.1 exonerate:protein2genome:local exon 297280 297393 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 297394 297395 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 297394 297460 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 297459 297460 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 297461 297583 . + . KQ414889.1 exonerate:protein2genome:local exon 297461 297583 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297280 297583 104 + . alignment_id 33 ; Query NvOr9 ; Align 297280 259 114 ; Align 297461 297 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 291 -> 333 Target range: 214614 -> 214740 292 : TyrTyrLeuIleThrGluTyrGluGlnArgGluProIleAlaThrValThrTyrPheL : 311 ::: :::::: |||!::.!...!!.!.!. !! !.!!|||||||||||| ! : PheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValV 214615 : tttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGG : 214672 312 : euLeuLeuCysSerPheValPheAsnIlePheIleLeuCysTyrIleGlyGluIleLe : 330 !!|||! ! !|||......|||||||||||||||...|||||||||||||||:!!:! alLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuVa 214673 : TGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGGCGAGCTTGT : 214729 331 : uThrGluGln : 333 !:!!|||||| lSerGluGln 214730 : GTCTGAACAG : 214740 vulgar: NvOr9 291 333 . KQ414889.1 214614 214740 + 103 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214615 214740 103 + . gene_id 34 ; sequence NvOr9 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214615 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214615 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214615 214740 103 + . alignment_id 34 ; Query NvOr9 ; Align 214615 292 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 296 -> 333 Target range: 277371 -> 277482 297 : GluTyrGluGlnArgGluProIleAlaThrValThrTyrPheLeuLeuLeuCysSerP : 316 |||!::....!.!!!!!: ! .!!! !..!|||:!!|||:!!:!!||| |||. GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 317 : heValPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuThrGluGln : 333 !. |||||||||||| !:!!|||||||||||||||||||||||||||||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAG : 277482 vulgar: NvOr9 296 333 . KQ414889.1 277371 277482 + 101 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277482 101 + . gene_id 35 ; sequence NvOr9 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277482 101 + . alignment_id 35 ; Query NvOr9 ; Align 277372 297 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 296 -> 333 Target range: 291368 -> 291479 297 : GluTyrGluGlnArgGluProIleAlaThrValThrTyrPheLeuLeuLeuCysSerP : 316 |||!::|||...!!!!!: !!|||!.!! !:!!|||||| !! !|||||| !|||| GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerP 291369 : GAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTT : 291426 317 : heValPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeuThrGluGln : 333 ||..!|||||||||.!.|||!!!||||||:!!||||||:!!||| !! !||| heThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln 291427 : TCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAG : 291479 vulgar: NvOr9 296 333 . KQ414889.1 291368 291479 + 101 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291369 291479 101 + . gene_id 36 ; sequence NvOr9 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291369 291479 101 + . alignment_id 36 ; Query NvOr9 ; Align 291369 297 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 338 Query range: 28 -> 264 Target range: 204215 -> 204905 29 : LysPheGluGluAspValLysTyrAlaThrAlaLeuAsnArgArgIleAlaAsnAlaI : 48 !:! |||||||||:!!!:!||||||||| !!!! !:!! !||| !... !: ArgAlaGluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleV 204216 : AGGGCAGAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAG : 204273 49 : leGlyIleTrpProIlePheThrSerThrGlyAlaArgLeuGlyPheAspIleCysVa : 67 !!||| ||||||||| ..!!:!:!!..! !! ||| ! || alGlyAlaTrpProIleProValAsnSerSerPro---------PheThrArgLeuVa 204274 : TCGGTGCGTGGCCGATTCCAGTGAACTCCTCTCCG---------TTCACGAGGCTAGT : 204321 68 : lLysThrLeuLysAsnAlaAlaValTyrIleLeuLeuSerPheLeuLeuValProGly : 86 |::! !:!!:!!:!!!.!!.!..!|||...|||... ...:!!:!!||||||||| lArgArgIleGluHisValValThrTyrPheLeuPhePheLeuMetIleValProGly 204322 : ACGGCGAATAGAACACGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGC : 204378 87 : IleLeuHisIleValValGluGluGlyLysLeuLysAlaLysIleLeuLysThrGlyP : 106 :!!|||:!!:!: !!:!!:!!||| !!!. !||| !::::!: !! !|||| LeuLeuTyrValPheLeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyP 204379 : CTCTTGTACGTGTTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGC : 204438 107 : roMetIleLeuAsnThrMetAlaLeuLeuLysTyrSerValMetLeuPheArgLysSe : 125 ||!!::!: ! !!:!!!: !!!!!!!||||||||||||!!:|||!:!|||! .. roIleValAsnCysSerIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAs 204439 : CGATCGTGAACTGCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGA : 204495 126 : rGlnIleGlnGluCysLeuLysGlnLeuGluSerAspTrpArgLysAlaGlyAsnAsp : 144 !:!!||||||:!! !!|||!!. :!!..! !!||||||! !:!!||| !..||| pLysIleGlnLysSerLeuAsnThrIleArgArgAspTrpIleGluAla---ThrAsp 204496 : CAAAATTCAGAAGAGTTTGAACACCATCAGACGCGACTGGATAGAGGCT---ACGGAT : 204549 145 : GluLeuArgAlaLeuMetArgArgAsnThrAlaValGlyHisArgLeuSerArgValC : 164 ||| !||| !:!!.!.||| !!!..!! !:!!|||!..|||:!!! !! !:!!. GluAsnArgLeuIlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleA 204550 : GAAAATCGGTTGATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTG : 204609 165 : ysValAlaThrPheTyrValGlyGlyIlePheTyrArgLeuIleLysThrLeuLeuTh : 183 ..!.!||||||.!.|||! !||||||:!:! !|||||| !||| !!||||||! laAlaAlaThrMetTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuAr 204610 : CAGCCGCCACTATGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAG : 204666 184 : rProIleArgTyrThrLysAspGlyLeuMetIleLysProLeuProSerProLeuTyr : 202 ! !! ! ! ||| |||..!:!!! |||!:!|||||||||!!!|||:!!||| gGlyThrIleValThrProAspAsnValThrIleArgProLeuProCysProValTyr 204667 : AGGAACGATCGTAACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtac : 204723 203 : LysGlyLeuPheArgPheAsnThrSerAlaSerProValTyrGluThrIlePheAlaT : 222 ... |||||| !..! !|||||| !||||||! !:!!||| ! ------PheValPhePheAsnGluGlnArgSerProAsnTyrGluIleValPheIleL 204724 : ------tttgttttctttaacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATAC : 204777 223 : hrGlnMetMetSerGlyPheValValHisSerThrThrValThrThrCysSerTyrAl : 241 !|||!!:|||:!!|||||||||..!:!!:!!..!! ! ! !||||||.!! .. euGlnIleMetAlaGlyPheValThrTyrAlaValIleSerGlyThrCysGlyMetCy 204778 : TGCAAATTATGGCTGGTTTTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTG : 204834 242 : aValLeuLeuAlaThrHisAlaCysGlyGlnLeuAspIleValValTyrLeuLeuLys : 260 !!.!|||!!!!.! !|||||||||.!!..!||| |||:!!||| !! !:!!!!. sAlaLeuPheValLeuHisAlaCysSerMetLeuArgIleLeuValAsnLysMetAsn 204835 : CGCGCTGTTCGTTCTCCACGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAAC : 204891 261 : ArgLeuIleGlu : 264 !|||:!:!!: AlaLeuValAsp 204892 : GCACTTGTGGAT : 204905 vulgar: NvOr3 28 264 . KQ414889.1 204215 204905 + 338 M 31 93 G 3 0 M 79 237 G 1 0 M 60 180 G 2 0 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204216 204905 338 + . gene_id 1 ; sequence NvOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204216 204905 . + . KQ414889.1 exonerate:protein2genome:local exon 204216 204905 . + . insertions 0 ; deletions 6 KQ414889.1 exonerate:protein2genome:local similarity 204216 204905 338 + . alignment_id 1 ; Query NvOr3 ; Align 204216 29 93 ; Align 204309 63 237 ; Align 204546 143 180 ; Align 204726 205 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 287 Query range: 29 -> 268 Target range: 221360 -> 222065 30 : PheGluGluAspValLysTyrAlaThrAlaLeuAsnArgArgIleAlaAsnAlaIleG : 49 !:!:!! !:!!||||||! ::!..! !|||!:!||| !!||| !!!. !!|||| TyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleG 221361 : TACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCG : 221418 50 : lyIleTrpProIlePheThrSerThrGlyAlaArgLeuGlyPheAspIleCysValLy : 68 ||:!!||||||! !! .!!!:!! !..!.!! ! !!:! !! !:!! ! lyValTrpProAsnSerAlaAsnIleSerThr---------ValGluArgTyrLeuTy 221419 : GTGTTTGGCCAAATTCAGCCAACATTTCCACG---------GTAGAGAGATACCTCTA : 221466 69 : sThrLeuLysAsnAlaAlaValTyrIleLeuLeuSerPheLeuLeuValProGlyIle : 87 !|||! !|||!.!!.! !|||! !|||:!!!!!||||||||||||||| !!! ! rTrpLeuIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSer 221467 : CTGGCTGATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGC : 221523 88 : LeuHisIleValValGluGluGlyLysLeuLysAlaLysIleLeuLysThrGlyProM : 107 |||:!!:!::!!:!!|||! !! ! ! :!! ! !!:!||| ! ! !||||||: LeuTyrValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProL 221524 : CTTTACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGT : 221583 108 : etIleLeuAsnThrMetAlaLeuLeuLysTyrSerValMetLeuPheArgLysSerGl : 126 !!! !!!! !..!||||||!!!||||||||| !:!!:!!:!!.!! !:!!!:!.! euSerPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAs 221584 : TGAGTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGA : 221640 127 : nIleGlnGluCysLeuLysGlnLeuGluSerAspTrpArgLysAlaGlyAsnAspGlu : 145 .|||!::||||||:!!:!!!:::!!|||!!!||||||!:!!!. ! ! !!..!:!! pIleArgGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLys 221641 : CATCCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAG : 221697 146 : LeuArgAlaLeuMetArgArgAsnThrAlaValGlyHisArgLeuSerArgValCysV : 165 !!:!! !:!!|||! !..!|||.!! ! !!|||...||||||! !! !:!!|||. AspLysAspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysT 221698 : GATAAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCA : 221757 166 : alAlaThrPheTyrValGlyGlyIlePheTyrArgLeuIleLysThrLeuLeuThrPr : 184 .! ! !.!.||| !||| :::|||||| ||| ! !! !!!!!:! hrPhePheMetTyrSerGlyPheValPheTyr---TyrIleAlaIleProPheSerVa 221758 : CATTTTTCATGTACAGTggtttcgttttttat---tacatAGCCATACCGTTTAGCGT : 221811 185 : oIleArgTyrThrLysAspGlyLeuMetIleLysProLeuProSerProLeuTyrLys : 203 ! !!:! ! !! !.!.! !::: ::: :::|||! ! !!!! ! lGlyLysIleProAlaGlnAspValAsnValThrPheIleProMetValPheProPhe 221812 : GGGTAAAATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTC : 221868 204 : GlyLeuPheArgPheAsnThrSerAlaSerProValTyrGluThrIlePheAlaThrG : 223 ..! !|||! ! !!:!!||| !! !||||||||| !!|||! !:!:|||:!! !| SerArgPheIleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuG 221869 : TCGAGATTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTC : 221928 224 : lnMetMetSerGlyPheValValHisSerThrThrValThrThrCysSerTyrAlaVa : 242 ||!!:|||:!!||| !:!!:!!||||||! !||| !.!!.!!||||||! !.!!. lnIleMetAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAl 221929 : AAATTATGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGC : 221985 243 : lLeuLeuAlaThrHisAlaCysGlyGlnLeuAspIleValValTyrLeuLeuLysArg : 261 !:!!!!!|||..!|||||||||||||||:!!.!.:!::!!:!! !! !||||||!.! aMetPheAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHis 221986 : TATGTTTGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACAT : 222042 262 : LeuIleGluAspAspGlyAsp : 268 ||||||.!.! ! !.!||| LeuIleAsnGlyArgAlaAsp 222043 : TTGATCAACGGCCGGGCGGAT : 222065 vulgar: NvOr3 29 268 . KQ414889.1 221360 222065 + 287 M 30 90 G 3 0 M 113 339 G 1 0 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221361 222065 287 + . gene_id 2 ; sequence NvOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221361 222065 . + . KQ414889.1 exonerate:protein2genome:local exon 221361 222065 . + . insertions 0 ; deletions 4 KQ414889.1 exonerate:protein2genome:local similarity 221361 222065 287 + . alignment_id 2 ; Query NvOr3 ; Align 221361 30 90 ; Align 221451 63 339 ; Align 221790 177 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 280 Query range: 31 -> 337 Target range: 232447 -> 234647 32 : GluAspValLysTyrAlaThrAlaLeuAsnArgArgIleAlaAsnAlaIleGlyIleT : 51 ..!||| !:!!|||::!! ! !:!!|||||| !!.!! !!.. !!!!:||| !| ArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaT 232448 : CGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCAT : 232505 52 : rpProIlePheThrSerThrGlyAlaArgLeuGlyPheAspIleCysValLysThrLe : 70 ||||| ! !!|||..!|||..! ! !.! .!.:!! !!.!||| !|| rpProArgValThrGluThrSerArg------AlaGlnGlnLeuLeuAlaLysLeuLe 232506 : GGCCGCGTGTTACAGAGACCTCGAGA------GCCCAGCAACTACTCGCGAAACTGTT : 232556 71 : uLysAsnAlaAlaValTyrIleLeuLeuSerPheLeuLeuValProGlyIleLeuHis : 89 |!:! !.!!..! !! !:!::!!:!!||| ! !:!!|||||| !!|||||| ! uArgLeuThrCysHisSerLeuMetIleSer---SerIleValProCysIleLeuPhe 232557 : GAGACTCACCTGTCATTCTCTGATGATCTCC---TCGATCGTACCGTGCATTCTGTTC : 232610 90 : IleValValGluGluGlyLysLeuLysAlaLysIleLeuLysThrGlyProMetIleL : 109 |||:!! !!|||!!: !!..|||:!!! !!:!!!: !...! !|||||||||! !! IleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetSerH 232611 : ATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTC : 232670 110 : euAsnThrMetAlaLeuLeuLysTyrSerValMetLeuPheArgLysSerGlnIleGl : 128 ! ! !|||!.! !|||!!.|||!!! !:!!||| !:! !!:!.!.|||! isPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLe 232671 : ACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCT : 232727 129 : nGluCysLeuLysGlnLeuGluSerAspTrpArgLysAlaGlyAsnAspGluLeuArg : 147 ! |||:!!:!!|||:!!:!!..!|||||||||!!.!.! !!!. !! ! !||| uTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLysProValHisArg 232728 : CTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGT : 232784 148 : AlaLeuMetArgArgAsnThrAlaValGlyHisArgLeuSerArgValCysValAlaT : 167 ! !|||||| !!:!|||.!! !:!!|||!.! !:!!:!! !!:!!..!!.! ! AspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheC 232785 : GATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTT : 232844 168 : hrPheTyrValGlyGlyIlePheTyrArgLeuIleLysThrLeuLeuThrProIleAr : 186 !.!.:!!..!|||! ! !! ! !!..!:!!:!!! ! !|||! !! ! !! ysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerThrPh 232845 : GCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTT : 232901 187 : gTyrThr<->LysAspGlyLeuMetIleLysProLeuProSerProLeuTyrLysGly : 204 !|||..! !!.!!:.!!! ! !!!: ! |||||||||!!! !!!!!|||! ! ! eTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThrLys 232902 : CTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAG : 232958 205 : LeuPheArgPheAsnThrSerAlaSerProValTyrGluThrIlePheAlaThrGlnM : 224 ||| .!.:!!|||!!! !||||||..! !!|||! !!!:|||!.! !||| Leu------MetAspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnC 232959 : CTG------ATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGT : 233012 225 : etMetSerGlyPheValValHisSerThrThrValThrThrCysSerTyrAlaValLe : 243 :!:|||||||||:!!|||:!!|||..!|||||| !.!!|||.!!! !.!!.!:! ysLeuSerGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaVa 233013 : GTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGT : 233069 244 : uLeuAlaThrHisAlaCysGlyGlnLeuAspIleValValTyrLeuLeuLysArgLeu : 262 !||||||! !||||||||||||||||||:!!:!:|||:!!! !||| ! !||| lLeuAlaMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeu 233070 : TCTAGCGATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTG : 233126 263 : IleGluAspAspGlyAspAsnGlyArgLeuThrArgValGly >>>> Target In : 277 :!:!!:! ! |||.!..!.! !|||:!!.!!!:! ! ! 1291 ValAspAlaLysGlyGlnGluGluArgValAlaGlnArgLys-+ 233127 : GTGGACGCGAAAGGGCAGGAGGAGAGAGTCGCGCAGAGGAAGtt.............. : 233173 278 : tron 1 >>>> AsnGluAlaValAspArgLysLeuArgValIleValGlnLeuHis : 291 bp ::: ::: !|||! !!:!||| !! ! ! |||||| +-AspPheSerLysTyrAlaLysTrpGlnValTyrGlyTyrLeuHis 233174 : ...........atgatttttcgaaatatgcAAAGTGGCAAGTTTACGGCTATCTACAT : 234504 292 : LeuLysVal<->LeuArgPheIleSerSerValGluAspLeuMetAsnGlnIleCysL : 310 !!!.||| !!!!!!|||||| !!!:!:!!|||:!!:!!||||||! !||||||| GlyAsnValThrPheSerPheIleArgAsnIleGluAsnValMetAsnLeuIleCysL 234505 : GGAAATGTTACTTTCAGTTTTATACGGAATATAGAGAACGTTATGAACCTAATATGCC : 234564 311 : euValGluIleLeuGlyGlySerThrIleLeuCysLeuThrSerPheTyrPheIleVa : 329 ||||||||:!::!!||| !!!!! !! !:!!|||:!! !..!!:!|||!!.:!!.. euValGluLeuValGlyCysThrLeuAsnMetCysMetLeuGluTyrTyrLeuLeuTh 234565 : TGGTTGAGTTGGTAGGATGCACGTTGAACATGTGCATGCTCGAGTATTATTTACTCAC : 234621 330 : lAspLeuGlnSerAsnAspAlaLeu : 337 !! ! ! :::||| ||| rValArgPheThrAsnLysIleLeu 234622 : GGTACGTTTTactaataaaattctt : 234647 vulgar: NvOr3 31 337 . KQ414889.1 232447 234647 + 280 M 28 84 G 2 0 M 19 57 G 1 0 M 107 321 G 0 3 M 17 51 G 2 0 M 69 207 5 0 2 I 0 1287 3 0 2 M 18 54 G 0 3 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232448 234647 280 + . gene_id 3 ; sequence NvOr3 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232448 233170 . + . KQ414889.1 exonerate:protein2genome:local exon 232448 233170 . + . insertions 3 ; deletions 5 KQ414889.1 exonerate:protein2genome:local splice5 233171 233172 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 233171 234461 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234460 234461 . + . intron_id 0 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local cds 234462 234647 . + . KQ414889.1 exonerate:protein2genome:local exon 234462 234647 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232448 234647 280 + . alignment_id 3 ; Query NvOr3 ; Align 232448 32 84 ; Align 232532 62 57 ; Align 232589 82 321 ; Align 232913 189 51 ; Align 232964 208 207 ; Align 234462 277 54 ; Align 234519 295 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 265 Query range: 25 -> 268 Target range: 217144 -> 217861 26 : SerAsnGluLysPheGluGluAspValLysTyrAlaThrAlaLeuAsnArgArgIleA : 45 !!!:!! ! :!::::|||:::::::::... ::!! ! !! !|||||| !!:!: ThrAspTyrGluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuL 217145 : ACCGACTACGAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGT : 217202 46 : laAsnAlaIleGlyIleTrpProIlePheThrSerThrGlyAlaArgLeuGlyPheAs : 64 !!!. !!!!:|||:!!|||||| !.!||| ! !.!!! ! !..! ! euLysProMetGlyLeuTrpPro------AsnSerArgThrThrThrArgSerArgLy 217203 : TGAAACCGATGGGTCTTTGGCCA------AACTCACGTACCACCACCAGATCCCGAAA : 217253 65 : pIleCysValLysThrLeuLysAsnAlaAlaValTyrIleLeuLeuSerPheLeuLeu : 83 ||| ! !||| |||! !|||||| ! !||| !|||:!!|||||||||!!! sIleLeuTyrLys---LeuIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPhe 217254 : AATCCTCTACAAA---CTGATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTC : 217307 84 : ValProGlyIleLeuHisIleValValGluGluGlyLysLeuLysAlaLysIleLeuL : 103 |||||| !! !:!!:!!:!: !!:!!|||! ! ! ! ||| ! ! !|||:!: ! ValProCysSerMetTyrValPheLeuGluValGluAspLeuTyrAspLysLeuLysL 217308 : GTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAAC : 217367 104 : ysThrGlyProMetIleLeuAsnThrMetAlaLeuLeuLysTyrSerValMetLeuPh : 122 ! !||||||:!!|||!!! !..!||||||!!!:!!||||||! ! !:!!:!! ! euPheGlyProLeuIlePheCysValMetAlaPheValLysTyrTyrSerLeuIleVa 217368 : TGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGT : 217424 123 : eArgLysSerGlnIleGlnGluCysLeuLysGlnLeuGluSerAspTrpArgLysAla : 141 !!.!|||:!!.!.|||!::||||||:!!!:!::!:!!||| !!|||||||||!!.!.! lHisLysAlaAspIleArgGluCysValArgArgIleGluArgAspTrpArgAsnVal 217425 : TCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTC : 217481 142 : GlyAsnAspGluLeuArgAlaLeuMetArgArgAsnThrAlaValGlyHisArgLeuS : 161 !! !!!::!! !|||! ! !|||! ! !|||.!! ! !!|||!.!!:!||| ArgCysGluLysAspArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuV 217482 : AGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGG : 217541 162 : erArgValCysValAlaThrPheTyrValGlyGlyIlePheTyrArgLeuIleLysTh : 180 !! !:!!|||..! ! !.!.||| !||| :::|||||| ||| ! alLeuLeuCysThrPhePheMetTyrSerGlyPheValPheTyr---TyrIleAlaIl 217542 : TCCTACTCTGTACCTTCTTCATGTACAGCggtttcgttttttat---tacatCGCTAT : 217595 181 : rLeuLeuThrProIleArgTyrThrLysAspGlyLeuMetIleLysProLeuProSer : 199 !! !:!!!:! ! ||| ! !..!!!:..! !! :!!! !:!!|||! ! eProIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeu 217596 : ACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTG : 217652 200 : ProLeuTyrLysGlyLeuPheArgPheAsnThrSerAlaSerProValTyrGluThrI : 219 !!!! ! ! !!:!! !.!!:!!||| !! !!!!|||..! !!|||! !: ValPheProPheThrLysTyrIleIleAspThrArgTyrThrProThrAsnGluIleV 217653 : GTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCTACGAACGAAATTG : 217712 220 : lePheAlaThrGlnMetMetSerGlyPheValValHisSerThrThrValThrThrCy : 238 !:||| ! !|||:!!!!::!!||| !:!!:!!|||.!!! !||| !.!!.!!|| alPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCy 217713 : TGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTG : 217769 239 : sSerTyrAlaValLeuLeuAlaThrHisAlaCysGlyGlnLeuAspIleValValTyr : 257 ||||! |||!.! !!!!|||..!|||||||||||||||:!!!!::!::!!:!! !! sSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGluValLeuMetAsn 217770 : CAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAAC : 217826 258 : LeuLeuLysArgLeuIleGluAspAspGlyAsp : 268 ! !|||:!!!.!||||||!!:! ! !.!||| TrpLeuGlnHisLeuIleAspGlyArgAlaAsp 217827 : TGGCTGCAACATTTAATCGACGGTAGAGCGGAT : 217861 vulgar: NvOr3 25 268 . KQ414889.1 217144 217861 + 265 M 27 81 G 2 0 M 14 42 G 1 0 M 106 318 G 1 0 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217145 217861 265 + . gene_id 4 ; sequence NvOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217145 217861 . + . KQ414889.1 exonerate:protein2genome:local exon 217145 217861 . + . insertions 0 ; deletions 4 KQ414889.1 exonerate:protein2genome:local similarity 217145 217861 265 + . alignment_id 4 ; Query NvOr3 ; Align 217145 26 81 ; Align 217226 55 42 ; Align 217268 70 318 ; Align 217586 177 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 265 Query range: 283 -> 435 Target range: 300438 -> 302166 284 : LeuArgValIleValGlnLeuHisLeuLysValLeu{Ar} >>>> Target Intr : 296 ||| !|||||||||!:! !|||:!!|||||||||{||} 140 bp LeuValValIleValArgAspHisValLysValLeu{Ar}++ 300439 : TTGGTCGTTATCGTTCGAGATCACGTGAAGGTTTTA{AG}gt................ : 300479 297 : on 1 >>>> {g}PheIleSerSerValGluAspLeuMetAsnGlnIleCysLeuVa : 311 {|}||| !!.!!:!||||||!!: !:!!..!.!..!!|||||||| ++{g}PheAlaLysAsnValGluGluThrLeuArgAspPheCysLeuVa 300480 : .........ag{A}TTTGCAAAGAACGTTGAGGAAACTTTGCGTGACTTCTGCTTAGT : 300660 312 : lGluIleLeuGlyGlySerThrIleLeuCysLeuThrSerPheTyrPheIleVal > : 330 |||||||!!!! !..!!!! !|||||||||||| !..!!:!|||! !:!:||| lGluIlePheGluSerThrLeuIleLeuCysLeuLeuGluTyrTyrCysLeuVal++ 300661 : GGAAATCTTCGAGTCCACGCTGATTTTGTGTTTGCTCGAATACTACTGTTTGGTGgt. : 300719 331 : >>> Target Intron 2 >>>> AspLeuGlnSerAsnAspAlaLeuGlyLeuPh : 340 970 bp !!:! !|||!:!!:!|||.!!:!!!.!:!!!! ++GluTrpGlnAsnSerAspThrIleAlaMetLe 300720 : ........................agGAATGGCAAAATAGCGACACGATCGCTATGTT : 301717 341 : eThrTyrMetValMetIleThrSerLeuIleAlaLeuLeuPheThrTyrCysTyrVal : 359 .|||!:!.!...!:!!:!!||||||!!!! ! ! !:!!|||! !!:!||||||:!! uThrPhePheThrLeuLeuThrSerPheThrPheAsnIlePheIlePheCysTyrIle 301718 : GACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATC : 301774 360 : GlyGluIleValSerAspLys >>>> Target Intron 3 >>>> AlaLysLy : 369 |||||||||:!!|||!!::!! 80 bp ..!!..:! GlyGluIleLeuSerGluGln++ ++CysSerGl 301775 : GGCGAGATTCTTTCCGAACAGgt.........................agTGTAGCCA : 301884 370 : sValGlyAlaLysThrTyrMetIleAsnTrpTyrAspLeuProProLysLysGlyLeu : 388 !:!!|||:!! !:!!||| !|||:!!||||||:!!|||||| !!|||!:!!.!! ! nIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyr 301885 : AATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATAC : 301941 389 : CysIleGlyLeuIleIleSerValAlaHisSerProValGlnLeuThrAlaGlyLysM : 408 !:!! !|||:!!! ! !:!!:!!!!.! !||| !:!!|||||||||||||||! AspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGlyLysI 301942 : GATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAA : 302001 409 : etLeuGluLeuSerMetTyrAsnPheGlyCys >>>> Target Intron 4 >>> : 419 !::!!!!:||||||:!! !!!..|||.!!! ! 82 bp leIleAspLeuSerLeuAsnThrPheSerSer++ 302002 : TAATCGACTTATCCTTGAATACATTCAGCTCTgt........................ : 302036 420 : > IleMetLysSerThrAlaGlyTyrLeuAsnLeuLeuArgThrIleThrAsp : 435 :!::!!|||!!!:!!!.!! !|||||||||||||||||||||:!!|||:!! ++ValValLysThrSerValValTyrLeuAsnLeuLeuArgThrValThrAsn 302037 : .agGTGGTGAAAACATCGGTGGTGTACTTGAATTTACTGCGAACAGTTACAAAC : 302166 vulgar: NvOr3 283 435 . KQ414889.1 300438 302166 + 265 M 12 36 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 33 99 5 0 2 I 0 966 3 0 2 M 37 111 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300439 302166 265 + . gene_id 5 ; sequence NvOr3 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300439 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300439 300476 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 300616 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300615 300616 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300617 300716 . + . KQ414889.1 exonerate:protein2genome:local exon 300617 300716 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300717 300718 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300717 301686 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301685 301686 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 3 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302166 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302166 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300439 302166 265 + . alignment_id 5 ; Query NvOr3 ; Align 300439 284 36 ; Align 300618 297 99 ; Align 301687 330 111 ; Align 301878 367 156 ; Align 302116 419 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 255 Query range: 24 -> 268 Target range: 226897 -> 227617 25 : CysSerAsnGluLysPheGluGluAspValLysTyrAlaThrAlaLeuAsnArgArgI : 44 ...!!!.!..!. ! !:!:!!||| !!:!!!!. ::!! ! !||||||||| !!: AlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpL 226898 : GCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGC : 226955 45 : leAlaAsnAlaIleGlyIleTrpProIlePheThrSerThrGlyAlaArgLeuGlyPh : 63 !: !!!. !!:!!|||||||||||| ! :!! !!! !.!!:!!|||:!!||| euLeuLysProLeuGlyIleTrpPro---SerSerArgLysSerSerArgIleGly-- 226956 : TGTTGAAACCACTCGGTATCTGGCCG---TCGTCGCGCAAAAGCTCTCGAATAGGA-- : 227009 64 : eAspIleCysValLysThrLeuLysAsnAlaAlaValTyrIleLeuLeuSerPheLeu : 82 ! !||| !!... !|||! !..! ! ! !||| |||:!!|||||| ! ----ArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGlu 227010 : ----AGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAG : 227060 83 : LeuValProGlyIleLeuHisIleValValGluGluGlyLysLeuLysAlaLysIleL : 102 |||||| !!.!! !|||:!!:!:|||:!!|||! ! ! ! ! !! !:!: LeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuL 227061 : TTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGA : 227120 103 : euLysThrGlyProMetIleLeuAsnThrMetAlaLeuLeuLysTyrSerValMetLe : 121 !! !! !||||||||| !!!! !.!!|||:!!|||||||||||||||:!!:!! ysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuTh 227121 : AAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGAC : 227177 122 : uPheArgLysSerGlnIleGlnGluCysLeuLysGlnLeuGluSerAspTrpArgLys : 140 !|||!.!:!!..!.!.|||! ||||||:!!:!!!:!:!!:!!!!!||||||!:!!!. rPheHisGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsn 227178 : GTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAAT : 227234 141 : AlaGlyAsnAspGluLeuArgAlaLeuMetArgArgAsnThrAlaValGlyHisArgL : 160 ! !! !! ||| !||| !:!!||| !! ! !!.!! ! !|||...!:!| IleArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysL 227235 : ATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAAT : 227294 161 : euSerArgValCysValAlaThrPheTyrValGlyGlyIlePheTyrArgLeuIleLy : 179 ||! !! !:!!|||..! ! ! !!!:! ... :::|||::: :!!:!! euIleThrIleCysThrPhePheValPheSerSerPheValPhePheTyrIleValVa 227295 : TGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGT : 227351 180 : sThrLeuLeuThrProIleArgTyrThrLysAspGlyLeuMetIleLysProLeuPro : 198 ! !!:!! !.!! !! ! ! |||:!!|||||| ! !!.. !:!!! ! lProIleAsnAlaGlySerValAlaThrGluAspGly---AsnHisSerTyrIleGln 227352 : ACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGA---AACCACAGTTACATTCAG : 227405 199 : SerProLeuTyrLysGlyLeuPheArgPheAsnThrSerAlaSerProValTyrGluT : 218 ! !|||!!! ! !.!!! ! !:!!..! !! !|||||| !! !!|||! MetProPheProPheProLysIleIleAlaAspValArgTyrSerProPheAsnGluI 227406 : ATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGA : 227465 219 : hrIlePheAlaThrGlnMetMetSerGlyPheValValHisSerThrThrValThrTh : 237 !.!!|||:!!..!|||.!.:!:!!!|||.!!|||:!!|||.!!..!||| !.!!.! lePhePheSerValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAl 227466 : TCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGC : 227522 238 : rCysSerTyrAlaValLeuLeuAlaThrHisAlaCysGlyGlnLeuAspIleValVal : 256 !|||||| |||!.!|||||||||..!|||||||||||||||:!!!!::!::!!||| aCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuVal 227523 : TTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTG : 227579 257 : TyrLeuLeuLysArgLeuIleGluAspAspGlyAsp : 268 ! !! !||| !!.!||||||!!:! ! !.!||| SerTrpLeuGlyHisLeuIleAspGlyArgAlaAsp 227580 : TCCTGGCTGGGACATTTGATCGACGGCAGAGCGGAT : 227617 vulgar: NvOr3 24 268 . KQ414889.1 226897 227617 + 255 M 28 84 G 1 0 M 9 27 G 2 0 M 127 381 G 1 0 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226898 227617 255 + . gene_id 6 ; sequence NvOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226898 227617 . + . KQ414889.1 exonerate:protein2genome:local exon 226898 227617 . + . insertions 0 ; deletions 4 KQ414889.1 exonerate:protein2genome:local similarity 226898 227617 255 + . alignment_id 6 ; Query NvOr3 ; Align 226898 25 84 ; Align 226982 54 27 ; Align 227009 65 381 ; Align 227390 193 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 250 Query range: 305 -> 434 Target range: 280019 -> 280551 306 : AsnGlnIleCysLeuValGluIleLeuGlyGlySerThrIleLeuCysLeuThrSerP : 325 :!!.!.:!!|||! ! !!.!.|||:!! !!.!!.!! ! !!!! !:!! !|||! AspAspLeuCysTyrPheHisIleValMetAlaLysIleAlaPheValMetTyrSerL 280020 : GACGACTTATGTTATTTCCATATTGTAATGGCAAAAATTGCATTCGTCATGTACTCGT : 280077 326 : heTyrPheIleValAspLeuGlnSerAsnAspAlaLeuGlyLeuPheThrTyrMetVa : 344 !.! !!.!! !!!:! !:!!..!|||||||||:!!||| !|||||||||:!::! euSerValPhe***GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMe 280078 : TGTCAGTTTTCTAGGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAAT : 280134 345 : lMetIleThrSerLeuIleAlaLeuLeuPheThrTyrCysTyrValGlyGluIleVal : 363 !.!.:!!! !||||||! ! !:!!|||! ! !||||||:!!|||||||||:!! tPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeu 280135 : GTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTC : 280191 364 : SerAspLys >>>> Target Intron 1 >>>> AlaLysLysValGlyAlaLy : 373 |||!!:::: 74 bp ..! !|||||||||!.!.. SerGluGln++ ++CysLeuLysValGlyValSe 280192 : TCCGAACaggt.........................agTGCTTAAAAGTCGGCGTGTC : 280295 374 : sThrTyrMetIleAsnTrpTyrAspLeuProProLysLysGlyLeuCysIleGlyLeu : 392 !||||||||||||:!!|||||| !|||||| !||||||!.!! ! !!:!: !||| rThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeu 280296 : AACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTG : 280352 393 : IleIleSerValAlaHisSerProValGlnLeuThrAlaGlyLysMetLeuGluLeuS : 412 |||.!!:!!|||:!!:!!||| !!:!!:!!|||||||||||||||!!::!!!!:|||| IlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuS 280353 : ATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCT : 280412 413 : erMetTyrAsnPheGlyCys >>>> Target Intron 2 >>>> IleMetLys : 421 ||:!: !!:!||| !! !! 71 bp :!::!:||| erLeuSerSerPheCysSer++ ++ValLeuLys 280413 : CTTTAAGCAGCTTCTGCAGCgt.........................agGTGTTAAAA : 280510 422 : SerThrAlaGlyTyrLeuAsnLeuLeuArgThrIleThr : 434 !!!.!! !!.!||||||!:!||||||||||||:!!||| ThrAlaPheAlaTyrLeuSerLeuLeuArgThrLeuThr 280511 : ACGGCATTCGCATATCTGAGCTTATTACGTACGCTTACC : 280551 vulgar: NvOr3 305 434 . KQ414889.1 280019 280551 + 250 M 61 183 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280020 280551 250 + . gene_id 7 ; sequence NvOr3 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280020 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280020 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 1 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280551 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280020 280551 250 + . alignment_id 7 ; Query NvOr3 ; Align 280020 306 183 ; Align 280277 367 156 ; Align 280504 419 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 248 Query range: 23 -> 264 Target range: 284487 -> 285207 24 : SerCysSerAsnGluLysPheGluGluAspValLysTyrAlaThrAlaLeuAsnArgA : 43 |||! !!!:!!..!! !!::!!: !||| !! !|||::!..! !:!!|||||| SerSerThrAspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgT 284488 : TCTTCAACCGATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTT : 284545 44 : rgIleAlaAsnAlaIleGlyIleTrpProIlePheThrSerThrGlyAlaArgLeuGl : 62 !!.!! !!!. !!||||||:!!||||||:!! ! !!!!..! !.!! ! ! rpPheLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLy 284546 : GGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAA : 284602 63 : yPheAspIleCysValLysThrLeuLysAsnAlaAlaValTyrIleLeuLeuSerPhe : 81 !.!!..! ! ||| .!!|||! !:!..! .!!|||:!!.!!||| sIleSerSerValValLeuAlaLeuIleSerCys---------PheLeuIleGlyPhe 284603 : GATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGT---------TTCCTGATAGGTTTC : 284650 82 : LeuLeuValProGlyIleLeuHisIleValValGluGlu<->GlyLysLeuLysAlaL : 100 |||||||||||| !! !||| !! !|||:!!!!::!! ||| ! ||| ! .!!| LeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrL 284651 : CTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGA : 284710 101 : ysIleLeuLysThrGlyProMetIleLeuAsnThrMetAlaLeuLeuLysTyrSerVa : 119 ||||| !! !! !||||||:!!! !!!! !! !|||||| !:!!||||||! !:! ysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIl 284711 : AGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACAT : 284767 120 : lMetLeuPheArgLysSerGlnIleGlnGluCysLeuLysGlnLeuGluSerAspTrp : 138 !:!::!!! ||| .!!:!!||| :!!|||:!!|||.!.:!!...:!!|||||| eLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIleArgAlaAspTrp 284768 : TCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGACTGG : 284824 139 : Arg<-><-><->LysAlaGlyAsnAspGluLeuArgAlaLeuMetArgArgAsnThrA : 155 ! ..! !.!....:::||| ||| :::|||||| !!:!.!! SerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaA 284825 : TCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTA : 284884 156 : laValGlyHisArgLeuSerArgValCysValAlaThrPheTyrValGlyGlyIlePh : 174 !:!!|||!.. !|||:!!! ! !!|||!.!!.! !.!.||| !||||||.!!|| rgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePh 284885 : GAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTT : 284941 175 : eTyrArgLeuIleLysThrLeuLeuThrProIleArgTyrThrLysAspGlyLeuMet : 193 ||||! ! !:!:! ! !!|||! !||| ! !! ! ! ! !! |||..! !! eTyrThrThrValMetProLeuCysThrValArgThrGluIleIleAspAsnGluThr 284942 : CTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACC : 284998 194 : IleLysProLeuProSerProLeuTyrLysGlyLeuPheArgPheAsnThrSerAlaS : 213 :!:!:! !!! ! !!! !|||:!!|||:::|||||| .!!:!! !! !!.!!| ValArgSerGlnAlaPheProIleTyrArgGlyLeu------LeuAspProArgThrS 284999 : GTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTT------CTCGATCCGCGTACCA : 285052 214 : erProValTyrGluThrIlePheAlaThrGlnMetMetSerGlyPheValValHisSe : 232 ||||| !!:!|||! !:!: !! !||| :!!:!!!.!||||||:!!:!!|| erProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSe 285053 : GCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTC : 285109 233 : rThrThrValThrThrCysSerTyrAlaValLeuLeuAlaThrHisAlaCysGlyGln : 251 |..!|||||| !.!!||||||! |||!.!:!!!!!!.!! !|||!.!||||||||| rValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGlyGln 285110 : GGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAA : 285166 252 : LeuAspIleValValTyrLeuLeuLysArgLeuIleGlu : 264 !!! |||:!!||| !||| ! !:!|||:!!!!: PheArgIleLeuValThrLysLeuAspLysLeuValAsp 285167 : TTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGAC : 285207 vulgar: NvOr3 23 264 . KQ414889.1 284487 285207 + 248 M 50 150 G 3 0 M 18 54 G 0 3 M 45 135 G 0 9 M 66 198 G 2 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284488 285207 248 + . gene_id 8 ; sequence NvOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284488 285207 . + . KQ414889.1 exonerate:protein2genome:local exon 284488 285207 . + . insertions 12 ; deletions 5 KQ414889.1 exonerate:protein2genome:local similarity 284488 285207 248 + . alignment_id 8 ; Query NvOr3 ; Align 284488 24 150 ; Align 284638 77 54 ; Align 284695 95 135 ; Align 284839 140 198 ; Align 285037 208 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 247 Query range: 69 -> 268 Target range: 208305 -> 208899 70 : LeuLysAsnAlaAlaValTyrIleLeuLeuSerPheLeuLeuValProGlyIleLeuH : 89 ||| !|||!.! ! !:!! !||||||.!!|||:!!:!!:!!||| ! !:!! LeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGlyMetP 208306 : CTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGCATGT : 208363 90 : isIleValValGluGluGlyLysLeuLysAlaLysIleLeuLysThrGlyProMetIl : 108 ! :!!:!!! !! ! ! ! !!! ! ! !:!!:!! !! !.!! !!:!!! heAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaLeuSe 208364 : TCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTCTGAG : 208420 109 : eLeuAsnThrMetAlaLeuLeuLysTyrSerValMetLeuPheArgLysSerGlnIle : 127 !!!! !! !||||||!!! !|||||| !:!!||| ! !!|||:!!.!!.!.||| rPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAspIle 208421 : CTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGACATA : 208477 128 : GlnGluCysLeuLysGlnLeuGluSerAspTrpArgLysAlaGlyAsnAspGluLeuA : 147 !:!:!!|||:!!:!! ! :!!|||:!!|||||||||!!.!.!! !:!!!!:||| !| ArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGluAspA 208478 : CGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAGGACA : 208537 148 : rgAlaLeuMetArgArgAsnThrAlaValGlyHisArgLeuSerArgValCysValAl : 166 || !:!!||| ! !|||.!!::! !!!.!...!:!|||! ! !:!!|||! !|| rgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysGlyAl 208538 : GGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCGGAGC : 208594 167 : aThrPheTyrValGlyGlyIlePheTyrArgLeuIleLysThrLeuLeuThrProIle : 185 | !.!.|||! !||| ||||||||| ||| !! !||||||! ! ! aPheMetTyrGlyGlyValIlePheTyr---TyrIleAlaLeuProLeuThrArgAsp 208595 : TTTCATGTACGGAGGtgtaattttctat---tacaTCGCTTTGCCGCTCACTCGAGAC : 208648 186 : ArgTyrThrLysAspGlyLeuMetIleLysProLeuProSerProLeuTyrLysGlyL : 205 !:! !..!:!!!!:||| !! :!:! ! ! ! ! ! !! ! ! ! LysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValProL 208649 : AAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCTA : 208708 206 : euPheArgPheAsnThrSerAlaSerProValTyrGluThrIlePheAlaThrGlnMe : 224 !|||! !.!.:!!..! !! !||||||||| !!|||! !.!!!:!.!!..!|||:! ysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnLe 208709 : AGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAATT : 208765 225 : tMetSerGlyPheValValHisSerThrThrValThrThrCysSerTyrAlaValLeu : 243 !:!!||||||||||||!.!|||!:!! !|||||| !.!!|||.!!! |||!.!||| uLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLeu 208766 : GTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCTG : 208822 244 : LeuAlaThrHisAlaCysGlyGlnLeuAspIleValValTyrLeuLeuLysArgLeuI : 263 ||||||! !||||||||||||||||||.!.|||:!!:!!! !! !:!!:!!!:!|||: LeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeuV 208823 : CTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTGG : 208882 264 : leGluAspAspGlyAsp : 268 !!!!:! ! !||| alAspGlyArgGluAsp 208883 : TCGATGGACGGGAGGAC : 208899 vulgar: NvOr3 69 268 . KQ414889.1 208305 208899 + 247 M 106 318 G 1 0 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208306 208899 247 + . gene_id 9 ; sequence NvOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208306 208899 . + . KQ414889.1 exonerate:protein2genome:local exon 208306 208899 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208306 208899 247 + . alignment_id 9 ; Query NvOr3 ; Align 208306 70 318 ; Align 208624 177 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 240 Query range: 35 -> 271 Target range: 266637 -> 267333 36 : TyrAlaThrAlaLeuAsnArgArgIleAlaAsnAlaIleGlyIleTrpProIlePheT : 55 |||::! ! !||||||||| !!.!! !!!. !!|||||| !|||||| !!.: TyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuS 266638 : TACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGT : 266695 56 : hrSerThrGlyAlaArgLeuGlyPheAspIleCysValLysThrLeuLysAsnAlaAl : 74 !! !|||..! ! .!!!!: ! !|||... ! ! !! !!.! erLeuThrSerLys---------LeuGluArgIleValSerTyrAlaLeuIleValIl 266696 : CACTCACATCTAAA---------CTCGAACGAATCGTTTCCTACGCTTTGATCGTCAT : 266743 75 : aValTyrIleLeuLeuSerPheLeuLeuValProGlyIleLeuHisIleValValGlu : 93 ! !||| !! !:!! !||| !:!!:!!||| !!:!:!!!|||:!!|||:!!||| eCysTyrCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGlu 266744 : CTGCTACTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAG : 266800 94 : GluGlyLysLeuLysAlaLysIleLeuLysThrGlyProMetIleLeuAsnThrMetA : 113 !!:! !!..:!!:::.!!|||:!: ! ! !||||||:!!! !! ! !:!:! AspGluSerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValG 266801 : GACGAGAGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCG : 266860 114 : laLeuLeuLysTyrSerValMetLeuPheArgLysSerGlnIleGlnGluCysLeuLy : 132 .! !:!!!!.|||!!!..!:!!|||.!.|||!..!.!:!!|||!::! |||:!!:! lyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGl 266861 : GAGGAATTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGA : 266917 133 : sGlnLeuGluSerAspTrpArgLysAlaGlyAsnAspGluLeuArgAlaLeuMetArg : 151 !!!.:!!:!!!!!|||||||||! !.! !!.. ||| !!:! !:!!||| ! uHisMetGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeu 266918 : GCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTG : 266974 152 : ArgAsnThrAlaValGlyHisArgLeuSerArgValCysValAlaThrPheTyrValG : 171 !:!|||.!! !:!!|||!.! !:!!:!!! ! !!|||!.!||| !.!. ! !| LysAsnAlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysG 266975 : AAGAACGCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCG : 267034 172 : lyGlyIlePheTyrArgLeuIleLysThrLeu<->LeuThrProIleArgTyrThrLy : 189 ||! !:!! !||| !!:!!|||! !.!!!!! :!! ! !!:!:..! ! !!! lyValLeuGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAs 267035 : GTGTTCTCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAA : 267091 190 : sAspGlyLeuMetIleLysProLeuProSerProLeuTyrLysGlyLeuPheArgPhe : 208 .!!: ! !!!::!! ! ! !||||||!!! !!:!!|||||| !:!!.!! ! !! nGluThrArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaVal 267092 : CGAGACTAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTT : 267148 209 : AsnThrSerAlaSerProValTyrGluThrIlePheAlaThrGlnMetMetSerGlyP : 228 :!!||| ||||||..! !!|||! !:!!.!!!.!:!!|||.!.:!:||||||| AspThr------SerProThrAsnGluIleValLeuValSerGlnPheValSerGlyP 267149 : GATACC------AGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGAT : 267202 229 : heValValHisSerThrThrValThrThrCysSerTyrAlaValLeuLeuAlaThrHi : 247 ||:!!|||:!!|||!:!..!||| !.!!! !||| !|||!.!:!!!!!|||.!!|| heIleValAsnSerSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHi 267203 : TCATCGTGAATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCA : 267259 248 : sAlaCysGlyGlnLeuAspIleValValTyrLeuLeuLysArgLeuIleGluAspAsp : 266 ||||||||||||||||..!:!::!!:!! ! !:!!|||..!!!!:!:.!. ..! sAlaCysGlyGlnLeuSerValLeuMetMetTrpIleLysGluPheValAsnArgSer 267260 : CGCGTGCGGACAGCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCC : 267316 267 : GlyAspAsnGlyArg : 271 !!|||!:!..!!:! ArgAspSerAsnLys 267317 : AGAGATAGCAATAAG : 267333 vulgar: NvOr3 35 271 . KQ414889.1 266637 267333 + 240 M 24 72 G 3 0 M 119 357 G 0 3 M 29 87 G 2 0 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266638 267333 240 + . gene_id 10 ; sequence NvOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266638 267333 . + . KQ414889.1 exonerate:protein2genome:local exon 266638 267333 . + . insertions 3 ; deletions 5 KQ414889.1 exonerate:protein2genome:local similarity 266638 267333 240 + . alignment_id 10 ; Query NvOr3 ; Align 266638 36 72 ; Align 266710 63 357 ; Align 267070 182 87 ; Align 267157 213 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 233 Query range: 25 -> 262 Target range: 289705 -> 290401 26 : SerAsnGluLysPheGluGluAspValLysTyrAlaThrAlaLeuAsnArgArgIleA : 45 ||||||!!::::!:!||| !|||:!!:::|||.!! !! !||| !!.! !!||| SerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleL 289706 : TCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCT : 289763 46 : laAsnAlaIleGlyIleTrpProIlePheThrSerThrGlyAlaArgLeuGlyPheAs : 64 !!!. !!||||||!!:!::|||.!! !! !||| !!.!::!|||! ! !! euLysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArg------Gl 289764 : TGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGC------GA : 289814 65 : pIleCysValLysThrLeuLysAsnAlaAlaValTyrIleLeuLeuSerPheLeuLeu : 83 : ! !.!..!..!||| !! ! !!.! !! ! :!!|||..!|||:!!:!! uArgThrAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIle 289815 : ACGAACGGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATA : 289871 84 : ValProGlyIleLeuHisIleValValGluGluGlyLysLeuLysAlaLysIleLeuL : 103 |||||| !! !! !|||:!!:!! !!...!!:..! ! :!!!!..!! :!! !! ValProPheSerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysA 289872 : GTACCGTTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGA : 289931 104 : ysThrGlyProMetIleLeuAsnThrMetAlaLeuLeuLysTyrSerValMetLeuPh : 122 !. !||||||:!!! !!! ! !! .!!!!!!!!||||||!!! !.!. !.! snLeuGlyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMe 289932 : ATCTCGGACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCAT : 289988 123 : eArgLysSerGlnIleGlnGluCysLeuLysGlnLeuGluSerAspTrpArgLysAla : 141 .!:! ||| !||| ...|||:!!|||!!.:!!|||!!!||||||!:!! ! ! tLysGlySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeu 289989 : GAAAGGTTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTG : 290045 142 : GlyAsnAspGluLeuArgAlaLeuMetArgArgAsnThrAlaValGlyHisArgLeuS : 161 !!:!!!!:!!:! !|||!.!:!!|||! !||| !!..!.!!:!!.!!!..!.!|||! ArgAspGluAspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuI 290046 : CGTGACGAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCA : 290105 162 : erArgValCysValAlaThrPheTyrValGlyGlyIlePheTyrArgLeuIleLysTh : 180 !!:!:!!|||!.! ! !!!.|||:!!||||||:!:! !|||!.! !:!!! ! ! leLysLeuCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIlePr 290106 : TAAAACTGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACC : 290162 181 : rLeuLeuThrProIleArgTyrThrLysAspGlyLeuMetIleLysProLeuProSer : 199 !|||!!!:!! ! !:! !..!!!.! !..!:!!! |||!:!|||||| !!! ! oLeuPheSerLys---LysSerValAsnGlyAsnValThrIleArgProLeuThrTyr 290163 : GTTGTTCTCGAAG---AAGAGCGTGAACGGTAACGTGACTATCAGACCTCTAACTTAT : 290216 200 : ProLeuTyrLysGlyLeuPheArgPheAsnThrSerAlaSerProValTyrGluThrI : 219 ||| !|||:!!! !!!! |||:!!..!..! !||||||!.!||||||! !: ProGlyTyrGluGluPhe------PheAspValGlnLysSerProAlaTyrGluIleV 290217 : CCCGGTTACGAGGAGTTC------TTCGACGTTCAGAAGAGTCCAGCGTACGAGATCG : 290270 220 : lePheAlaThrGlnMetMetSerGlyPheValValHisSerThrThrValThrThrCy : 238 !!|||..!! !!!. :!:! !! !.!.:!!..! !:!! !|||:!!.!!.!!! alPheCysMetHisCysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTy 290271 : TCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTA : 290327 239 : sSerTyrAlaValLeuLeuAlaThrHisAlaCysGlyGlnLeuAspIleValValTyr : 257 !|||! .!!..!:!!!!!|||||||||.!!|||||||||:!! ! ||| !..! rSerLeuThrThrIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThr 290328 : CAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACG : 290384 258 : LeuLeuLysArgLeu : 262 ! !|||:!! !||| ArgLeuGluAspLeu 290385 : CGGCTGGAGGATCTG : 290401 vulgar: NvOr3 25 262 . KQ414889.1 289705 290401 + 233 M 36 108 G 2 0 M 121 363 G 1 0 M 20 60 G 2 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289706 290401 233 + . gene_id 11 ; sequence NvOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289706 290401 . + . KQ414889.1 exonerate:protein2genome:local exon 289706 290401 . + . insertions 0 ; deletions 5 KQ414889.1 exonerate:protein2genome:local similarity 289706 290401 233 + . alignment_id 11 ; Query NvOr3 ; Align 289706 26 108 ; Align 289814 64 363 ; Align 290177 186 60 ; Align 290237 208 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 228 Query range: 66 -> 268 Target range: 212956 -> 213559 67 : ValLysThrLeuLysAsnAlaAlaValTyrIleLeuLeuSerPheLeuLeuValProG : 86 :!! !||| |||.!!!.! !||| !|||:!!.!!!:!|||:!!:!!||| IleAlaArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProC 212957 : ATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGT : 213014 87 : lyIleLeuHisIleValValGluGluGlyLysLeuLysAlaLysIleLeuLysThrGl : 105 !!! !|||:!!:!: !!:!!!!:! ! ...::: :::||| ! ! !|| ysSerLeuTyrValPheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGl 213015 : GCAGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGG : 213071 106 : yProMetIleLeuAsnThrMetAlaLeuLeuLysTyrSerValMetLeuPheArgLys : 124 | !.!. !!!! !..! ||||||! !|||||| ! !:!!:!!.!!!.! yIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGly 213072 : CATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGT : 213128 125 : SerGlnIleGlnGluCysLeuLysGlnLeuGluSerAspTrpArgLysAlaGlyAsnA : 144 ..!.!.|||!:: !|||:!!:!!!!.:!!:!!! !||||||!:!!!. ! !:!!! AspAspIleArgThrCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisG 213129 : GACGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACG : 213188 145 : spGluLeuArgAlaLeuMetArgArgAsnThrAlaValGlyHisArgLeuSerArgVa : 163 !:||| !!:!! !:!!||| ! !|||.!!::! !!||| ! |||:!! !! !:! luGluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIl 213189 : AGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAAT : 213245 164 : lCysValAlaThrPheTyrValGlyGlyIlePheTyrArgLeuIleLysThrLeuLeu : 182 !|||!.! ! !.!.|||..!||| !! |||||| !|||:!! ! !!:!! ! eCysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuValValProIleSer 213246 : TTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGC : 213302 183 : ThrProIleArgTyrThrLysAspGlyLeuMetIleLysProLeuProSerProLeuT : 202 .!! !! !! ! .!!:!!||| |||! :!:! ! ! !! !! ! !:!! AlaAspLysMetValAlaGluAsp---LeuAsnValThrPheArgGlnMetValValP 213303 : GCGGATAAAATGGTAGCGGAGGAT---CTTAACGTGACATTCAGACAAATGGTGGTCC : 213359 203 : yrLysGlyLeuPheArgPheAsnThrSerAlaSerProValTyrGluThrIlePheAl : 221 ! ..! !|||! ! !!:!!..! !! !||||||||| !!|||! !.!!||| roValSerArgPheIleValAspValArgTyrSerProValAsnGluIlePhePheLe 213360 : CTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTT : 213416 222 : aThrGlnMetMetSerGlyPheValValHisSerThrThrValThrThrCysSerTyr : 240 !! !|||!!:!!::!!||| ! :!!:!!|||:!!! !.!!|||..!.!!||||||! uIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAlaCysSerLeu 213417 : GATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTG : 213473 241 : AlaValLeuLeuAlaThrHisAlaCysGlyGlnLeuAspIleValValTyrLeuLeuL : 260 |||!.!:!!!!!|||..!|||||||||||||||:!!! !|||:!!:!! !! !|||: AlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuG 213474 : GCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGG : 213533 261 : ysArgLeuIleGluAspAspGlyAsp : 268 !!!.!||||||!!:! ! ! !||| luHisLeuIleAspGlyArgGluAsp 213534 : AACATTTGATAGACGGTAGAGAGGAT : 213559 vulgar: NvOr3 66 268 . KQ414889.1 212956 213559 + 228 M 124 372 G 1 0 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212957 213559 228 + . gene_id 12 ; sequence NvOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212957 213559 . + . KQ414889.1 exonerate:protein2genome:local exon 212957 213559 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212957 213559 228 + . alignment_id 12 ; Query NvOr3 ; Align 212957 67 372 ; Align 213329 192 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 227 Query range: 23 -> 264 Target range: 278540 -> 279260 24 : SerCysSerAsnGluLysPheGluGluAspValLysTyrAlaThrAlaLeuAsnArgA : 43 |||! !!!:!!..!! !!::.!. !||| !! !|||::!..! !:!!|||||| SerSerThrAspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgT 278541 : TCGTCAACCGATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTT : 278598 44 : rgIleAlaAsnAlaIleGlyIleTrpProIlePheThrSerThrGlyAlaArgLeuGl : 62 !!.!! !!!. !!||||||:!!||||||:!! ! !!!!..! !.!! ! ! rpPheLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLy 278599 : GGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAA : 278655 63 : yPheAspIleCysValLysThrLeuLysAsnAlaAlaValTyrIleLeuLeuSerPhe : 81 !.!!..! ! ||| .!!|||! !:!..! .!!|||:!!.!!||| sIleSerSerValValLeuAlaLeuIleSerCys---------PheLeuIleGlyPhe 278656 : GATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGC---------TTCCTGATAGGTTTC : 278703 82 : LeuLeuValProGlyIleLeuHisIleValValGluGlu<->GlyLysLeuLysAlaL : 100 |||||||||||| !! !||| !! !|||:!!!!::!! ||| ! ||| ! .!!| LeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrL 278704 : CTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGA : 278763 101 : ysIleLeuLysThrGlyProMetIleLeuAsnThrMetAlaLeuLeuLysTyrSerVa : 119 ||||| !! !! !||||||:!:! !!!! !||||||||| !:!!||||||! !:! ysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIl 278764 : AGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACAT : 278820 120 : lMetLeuPheArgLysSerGlnIleGlnGluCysLeuLysGlnLeuGluSerAspTrp : 138 !:!::!!! ||| .!!:!!||| :!!|||:!!!!..!.:!!...!!!|||||| eLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrp 278821 : TCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGG : 278877 139 : Arg<-><-><->LysAlaGlyAsnAspGluLeuArgAlaLeuMetArgArgAsnThrA : 155 ! ..! ! ! ...:::||| ||| :::|||||| !!:!.!! SerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaA 278878 : TCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTA : 278937 156 : laValGlyHisArgLeuSerArgValCysValAlaThrPheTyrValGlyGlyIlePh : 174 !:!!|||!.. !|||:!!! ! !! !!!.!!.! !.!.||| !||||||:!!|| rgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPh 278938 : GAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTT : 278994 175 : eTyrArgLeuIleLysThrLeuLeuThrProIleArgTyrThrLysAspGlyLeuMet : 193 ||||! ! !:!:! ! !!|||!!!.!! ! !! ! ! ! !! |||..! !! ! eTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIleAspAsnGluThr 278995 : CTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACG : 279051 194 : IleLysProLeuProSerProLeuTyrLysGlyLeuPheArgPheAsnThrSerAlaS : 213 :!:!:! !!! ! !!! !|||:!!|||:::|||||| .!!:!! !! !!.!!| ValArgSerGlnAlaPheProIleTyrArgGlyLeu------LeuAspProArgThrS 279052 : GTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTC------CTCGATCCGCGTACCA : 279105 214 : erProValTyrGluThrIlePheAlaThrGlnMetMetSerGlyPheValValHisSe : 232 ||||| !!:!|||! !:!: !! !||| :!!:!!!.!||||||:!!:!!|| erProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSe 279106 : GCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTC : 279162 233 : rThrThrValThrThrCysSerTyrAlaValLeuLeuAlaThrHisAlaCysGlyGln : 251 |..!|||||| !.!!||||||! !!.!:!!!!!!.!! !|||!.!||||||||| rValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCysGlyGln 279163 : GGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAA : 279219 252 : LeuAspIleValValTyrLeuLeuLysArgLeuIleGlu : 264 !!! |||:!!||| !||| ! !:!||||||!!: PheArgIleLeuValThrLysLeuAspLysLeuIleAsp 279220 : TTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGAC : 279260 vulgar: NvOr3 23 264 . KQ414889.1 278540 279260 + 227 M 50 150 G 3 0 M 18 54 G 0 3 M 45 135 G 0 9 M 66 198 G 2 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278541 279260 227 + . gene_id 13 ; sequence NvOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278541 279260 . + . KQ414889.1 exonerate:protein2genome:local exon 278541 279260 . + . insertions 12 ; deletions 5 KQ414889.1 exonerate:protein2genome:local similarity 278541 279260 227 + . alignment_id 13 ; Query NvOr3 ; Align 278541 24 150 ; Align 278691 77 54 ; Align 278748 95 135 ; Align 278892 140 198 ; Align 279090 208 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 224 Query range: 28 -> 265 Target range: 259751 -> 260450 29 : LysPheGluGluAspValLysTyrAlaThrAlaLeuAsnArgArgIleAlaAsnAlaI : 48 !..||| ... !! ! ! |||::! ! !!!!|||||| !!.!! !!!. !!| SerPheThrSerHisSerAspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProI 259752 : AGTTTCACTAGCCACAGTGACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGA : 259809 49 : leGlyIleTrpProIlePheThrSerThrGlyAlaArgLeuGlyPheAspIleCysVa : 67 ||||| !|||||| !! :!!|||||| .!!|||||| !!:! !:! leGlyAlaTrpProProSerSerSerThr---ThrArgLeu------GluLysIleIl 259810 : TAGGCGCTTGGCCACCTTCATCCTCCACG---ACCAGACTC------GAGAAGATCAT : 259857 68 : lLysThrLeuLysAsnAlaAlaValTyrIleLeuLeuSerPheLeuLeuValProGly : 86 !.....!:!! !! ! ! ! !|||! ! !:!! ! !! !|||:!!||| !! eSerValIleLeuIlePheIleCysTyrSerThrIleLeuValThrLeuIleProCys 259858 : CTCTGTTATCCTGATCTTTATCTGCTACAGTACCATACTGGTCACCCTGATCCCGTGC : 259914 87 : IleLeuHisIleValValGluGluGlyLysLeuLysAlaLysIleLeuLysThrGlyP : 106 :!!||||||!!::!!:!!|||:!!! !!..||| ! !|||! ! ! !|||| ValLeuHisMetLeuLeuGluLysGluSerLeuTyrMetLysThrLysValLeuGlyP 259915 : GTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGAAGGTGCTCGGTC : 259974 107 : roMetIleLeuAsnThrMetAlaLeuLeuLysTyrSerValMetLeuPheArgLysSe : 125 ||:!:! !! ! !:!:!.!! !:!!!!.|||!!!..!:!!|||!!.||| !! roLeuThrHisTrpPheValGlyCysIleAsnTyrThrThrLeuLeuLeuArgGlyAr 259975 : CTCTTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTGTTGAGAGGCAG : 260031 126 : rGlnIleGlnGluCysLeuLysGlnLeuGluSerAspTrpArgLysAlaGlyAsnAsp : 144 !.!.|||! ...|||:!!:!!!!.:!!|||!:!|||||||||! ! !!..!!: gAspIleLeuSerCysValGluHisValGluAsnAspTrpArgIleIleThrArgGlu 260032 : AGACATACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGAATTATAACGAGGGAG : 260088 145 : GluLeuArgAlaLeuMetArgArgAsnThrAlaValGlyHisArgLeuSerArgValC : 164 :!! !!:! !:!!||| !||| !!.!! ! !!|||... !:!!:!! ! !| LysAspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgTyrValAlaAlaSerC 260089 : AAGGATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGATACGTCGCTGCCTCTT : 260148 165 : ysValAlaThrPheTyrValGlyGlyIlePheTyrArgLeuIleLysThrLeuLeuTh : 183 ||!.!||| ! ! ! ! !|||! !:!:! !!:! !!|||:!!! !..!||| !|| ysAlaAlaPheValGlnGlyGlyValLeuCysPheCysLeuValThrValLeuSerTh 260149 : GCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTCACGGTGTTGAGTAC : 260205 184 : rPro<->IleArgTyrThrLysAspGlyLeuMetIleLysProLeuProSerProLeu : 201 | ! |||!:! !!!.!!: ! !!!::!! ! ! !||||||!!! !!:!! rGluValIleGlnValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaVal 260206 : AGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTGCCGTGCGCGGTG : 260262 202 : TyrLysGlyLeuPheArgPheAsnThrSerAlaSerProValTyrGluThrIlePheA : 221 ||||||! !||| .!.|||..!!:!! !||||||:!! !!|||! !:!!.!!! TyrLysGluLeu------IleAsnValAsnAspSerProMetAsnGluIleValLeuV 260263 : TACAAAGAGCTG------ATAAACGTGAACGACAGTCCTATGAACGAGATTGTTCTCG : 260316 222 : laThrGlnMetMetSerGlyPheValValHisSerThrThrValThrThrCysSerTy : 240 .!..!|||.!.:!:|||||||||:!!|||:!!|||!:!|||||| !! !! !||| alValGlnPheValSerGlyPheIleValAsnSerSerThrValGlyIlePheSerLe 260317 : TCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTTCAGTCT : 260373 241 : rAlaValLeuLeuAlaThrHisAlaCysGlyGlnLeuAspIleValValTyrLeuLeu : 259 !|||!.!:!!|||.!!.!!||||||||||||||||||:!!:!::!!:!! ! ! !:!! uAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMetGluTrpIle 260374 : CGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAATGGATC : 260430 260 : LysArgLeuIleGluAsp : 265 ! !..!!!!:!:!!:!!: ThrGluPheValAspGlu 260431 : ACGGAGTTTGTGGACGAG : 260450 vulgar: NvOr3 28 265 . KQ414889.1 259751 260450 + 224 M 29 87 G 1 0 M 3 9 G 2 0 M 121 363 G 0 3 M 21 63 G 2 0 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259752 260450 224 + . gene_id 14 ; sequence NvOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259752 260450 . + . KQ414889.1 exonerate:protein2genome:local exon 259752 260450 . + . insertions 3 ; deletions 5 KQ414889.1 exonerate:protein2genome:local similarity 259752 260450 224 + . alignment_id 14 ; Query NvOr3 ; Align 259752 29 87 ; Align 259839 59 9 ; Align 259848 64 363 ; Align 260214 185 63 ; Align 260277 208 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 215 Query range: 323 -> 435 Target range: 291350 -> 293251 324 : SerPheTyrPheIleValAspLeuGlnSerAsnAspAlaLeuGlyLeuPheThrTyrM : 343 :::||| !:!.!! !!!:! !:!!|||!:!|||:!!:!!|||:!!!!.||||||: ThrPheValTyrPhe***GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrV 291351 : acttttgtaTACTTTTAGGAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACG : 291408 344 : etValMetIleThrSerLeuIleAlaLeuLeuPheThrTyrCysTyrValGlyGluIl : 362 !:..!:!::!!||||||!!!! ! ! !:!!.!.! !!:!|||||||||||||||:! alThrLeuLeuThrSerPheThrPheAsnIleLeuIlePheCysTyrValGlyGluLe 291409 : TCACTCTCCTCACTTCTTTCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACT : 291465 363 : eValSerAspLys >>>> Target Intron 1 >>>> AlaLysLysValGlyA : 372 !:!! !! :!! 913 bp !.!!..:!!:!!!.! uLeuLeuGlyGln++ ++GlySerGluIleAlaH 291466 : TCTTCTTGGACAGgt.........................agGGTAGTGAAATCGCGC : 292408 373 : laLysThrTyrMetIleAsnTrpTyrAspLeuProProLysLysGlyLeuCysIleGl : 391 ! :!!||| ! !.!.||||||:!!|||||| !::!|||!.!! ! !|||! isAlaSerTyrAspThrGluTrpTyrAsnLeuProArgArgLysAlaArgAspIleVa 292409 : ACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGT : 292465 392 : yLeuIleIleSerValAlaHisSerProValGlnLeuThrAlaGlyLysMetLeuGlu : 410 !|||:!::!!:!!:!!.!! ! !|||:!!:!!|||||||||||||||!!:!!!! lLeuValLeuAlaIleThrLysHisProIleLysLeuThrAlaGlyLysIlePheVal 292466 : TCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTT : 292522 411 : LeuSerMetTyrAsnPheGlyCys >>>> Target Intron 2 >>>> IleMe : 420 ||||||:!! !!!.!||||||..! 652 bp :!::! LeuSerLeuAsnThrPheGlyAla++ ++ValLe 292523 : CTCTCGTTGAACACTTTTGGCGCTgt.........................agGTGCT : 293204 421 : tLysSerThrAlaGlyTyrLeuAsnLeuLeuArgThrIleThrAsp : 435 !||||||:!!!.!! !|||:!!|||:!!|||||||||:!!|||!!: uLysSerSerValValTyrMetAsnMetLeuArgThrValThrGlu 293205 : GAAATCGTCGGTAGTTTACATGAACATGCTACGAACCGTCACTGAA : 293251 vulgar: NvOr3 323 435 . KQ414889.1 291350 293251 + 215 M 43 129 5 0 2 I 0 909 3 0 2 M 52 156 5 0 2 I 0 648 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291351 293251 215 + . gene_id 15 ; sequence NvOr3 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291351 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291351 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292548 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292548 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 292549 292550 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 292549 293200 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 293199 293200 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 293201 293251 . + . KQ414889.1 exonerate:protein2genome:local exon 293201 293251 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291351 293251 215 + . alignment_id 15 ; Query NvOr3 ; Align 291351 324 129 ; Align 292393 367 156 ; Align 293201 419 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 213 Query range: 27 -> 271 Target range: 262825 -> 263545 28 : GluLysPheGluGluAspValLysTyrAlaThrAlaLeuAsnArgArgIleAlaAsnA : 47 |||!..|||! ... ! ! ! |||::! ! !:!!|||||| !!:!: !!!. GluSerPheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysP 262826 : GAAAGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAAC : 262883 48 : laIleGlyIleTrpProIlePheThrSerThrGlyAlaArgLeuGlyPheAspIleCy : 66 !!|||||| !||||||:!:! !.!!|||! !..! ! .!.!!: ! roIleGlyAlaTrpProLeuSerAlaSerIleSerArg---------MetGluArgIl 262884 : CGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGA---------ATGGAACGAAT : 262931 67 : sValLysThrLeuLysAsnAlaAlaValTyrIleLeuLeuSerPheLeuLeuValPro : 85 !:!! ! !||| !! !!.!!.! !||| !|||:!! !! ! !:!!:!!||| eIleTrpPheLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIlePro 262932 : TATCTGGTTTCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCT : 262988 86 : GlyIleLeuHisIleValValGluGluGlyLysLeuLysAlaLysIleLeuLysThrG : 105 ..!|||||||||||||||:!!|||! ! !!!.!!! ! !|||:!:! ! !| SerIleLeuHisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuG 262989 : TCCATACTTCATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCG : 263048 106 : lyProMetIleLeuAsnThrMetAlaLeuLeuLysTyrSerValMetLeuPheArgLy : 124 |||||:!: !! ! !:!:!.!:!!:!!!!.|||!!! !:!!|||.!!!.!!. lyProLeuGlyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSe 263049 : GTCCGCTCGGTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAG : 263105 125 : sSerGlnIleGlnGluCysLeuLysGlnLeuGluSerAspTrpArgLysAlaGlyAsn : 143 .!.!.!.||||||! |||:!!:!!!!.:!!:!!..!|||||| !!! !.! !!.. rLysAspIleGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArg 263106 : TAAAGATATACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGG : 263162 144 : AspGluLeuArgAlaLeuMetArgArgAsnThrAlaValGlyHisArgLeuSerArgV : 163 ||| !!:! !:!!|||! !!:!|||.!! ! !|||!.! !:!!:!! ! LeuGluAspGlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaS 263163 : TTGGAGGATCAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTT : 263222 164 : alCysValAlaThrPheTyrValGlyGlyIlePheTyrArgLeuIleLysThrLeuLe : 182 !|||!.! ! !.!. ! ..!.!! !!!:! ! ! !!|||:!!! !.!!!!! erCysAlaIlePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheTh 263223 : CTTGCGCGATCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCAC : 263279 183 : uThrPro<->IleArgTyrThrLysAspGlyLeuMetIleLysProLeuProSerPro : 200 !|||! ! |||..! !! !!!.!!: ! !!!::!!::: !||||||!!!||| rThrGlnValIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysPro 263280 : TACACAGGTGATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCA : 263336 201 : LeuTyrLysGlyLeuPheArgPheAsnThrSerAlaSerProValTyrGluThrIleP : 220 :!!||||||! !:!!.!!! ! !!:!!||| !:!|||..! !!|||! !.!!. ValTyrLysGluIleIleProValAspThr------AsnProThrAsnGluIlePheL 263337 : GTGTACAAAGAGATCATTCCAGTCGACACG------AATCCGACGAACGAGATCTTTC : 263390 221 : heAlaThrGlnMetMetSerGlyPheValValHisSerThrThrValThrThrCysSe : 239 !!|||||||||.!.:!!|||||||||:!!||| !:!!||||||||| !.!!! !.! euAlaThrGlnPheLeuSerGlyPheIleValThrAlaThrThrValGlyAlaPheGl 263391 : TCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGG : 263447 240 : rTyrAlaValLeuLeuAlaThrHisAlaCysGlyGlnLeuAspIleValValTyrLeu : 258 ! .!!!.!:!!!!!||| !||||||||||||||||||:!!:!::!!:!!! !! ! yMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrp 263448 : TATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGG : 263504 259 : LeuLysArgLeuIleGluAspAspGlyAspAsnGlyArg : 271 :!!! !..!!!!:!:.!..!...! !!|||.!...!!:! IleThrGluPheValAsnGlnSerArgAspGluAsnLys 263505 : ATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAG : 263545 vulgar: NvOr3 27 271 . KQ414889.1 262825 263545 + 213 M 32 96 G 3 0 M 122 366 G 0 3 M 26 78 G 2 0 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262826 263545 213 + . gene_id 16 ; sequence NvOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262826 263545 . + . KQ414889.1 exonerate:protein2genome:local exon 262826 263545 . + . insertions 3 ; deletions 5 KQ414889.1 exonerate:protein2genome:local similarity 262826 263545 213 + . alignment_id 16 ; Query NvOr3 ; Align 262826 28 96 ; Align 262922 63 366 ; Align 263291 185 78 ; Align 263369 213 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 193 Query range: 324 -> 434 Target range: 258249 -> 258738 325 : PheTyrPheIleValAspLeuGlnSerAsnAspAlaLeuGlyLeuPheThrTyrMetV : 344 ||||||:::... :::! !...!!!...||| ...||| :::|||.!.: PheTyrTyrPheGlnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheM 258250 : ttttattattttcaggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTA : 258307 345 : alMetIleThrSerLeuIleAlaLeuLeuPheThrTyrCysTyrValGlyGluIleVa : 363 !!!!::!!! !|||||| :::|||... ||||||:!!|||||||||:! etIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLe 258308 : TGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATT : 258364 364 : lSerAspLys >>>> Target Intron 1 >>>> AlaLysLysValGlyAlaL : 373 !!!!!!::!! 90 bp ..!||||||||||||! ! uThrGluGln++ ++CysLysLysValGlyAspV 258365 : AACAGAACAGgt.........................agTGCAAGAAAGTTGGCGACG : 258484 374 : ysThrTyrMetIleAsnTrpTyrAspLeuProProLysLysGlyLeuCysIleGlyLe : 392 !..!||||||! !:!!|||||| !!|||||| !|||!:! !||| !:!! !|| alValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLe 258485 : TGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTT : 258541 393 : uIleIleSerValAlaHisSerProValGlnLeuThrAlaGlyLysMetLeuGluLeu : 411 |:!!|||:!! !:!! ! ! !||||||:!!||||||||||||.........::! uValIleAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePheHisMet 258542 : GGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatG : 258598 412 : SerMetTyrAsnPheGlyCys >>>> Target Intron 2 >>>> IleMetLy : 421 |||!!:|||!..|||.!! ! 69 bp :!!!!:|| SerIleTyrThrPheSerAsp++ ++ValIleLy 258599 : TCCATTTACACATTCAGCGATgt.........................agGTAATAAA : 258697 422 : sSerThrAlaGlyTyrLeuAsnLeuLeuArgThrIleThr : 434 |!!!:!! !!.!|||||||||||||||||| !:!!:!! sThrSerPheAlaTyrLeuAsnLeuLeuArgGlnValSer 258698 : AACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGTATCG : 258738 vulgar: NvOr3 324 434 . KQ414889.1 258249 258738 + 193 M 42 126 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258250 258738 193 + . gene_id 17 ; sequence NvOr3 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 258250 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258250 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258250 258738 193 + . alignment_id 17 ; Query NvOr3 ; Align 258250 325 126 ; Align 258466 367 156 ; Align 258691 419 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 189 Query range: 146 -> 263 Target range: 304452 -> 304797 147 : ArgAlaLeuMetArgArgAsnThrAlaValGlyHisArgLeuSerArgValCysValA : 166 |||! !:!!|||! !!:! !! ! !:!!|||!..!.!|||!!!! !:!!|||!.! ArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaI 304453 : CGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCA : 304510 167 : laThrPheTyrValGlyGlyIlePheTyrArgLeuIleLysThrLeuLeuThrProIl : 185 ! !.!.|||..!||||||! !.!!|||!.! !:!!! ! !!!! !||| !! lePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheAlaThrGlyTh 304511 : TATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCGACCGGAAC : 304567 186 : eArgTyrThrLysAspGlyLeuMetIleLysProLeuProSerProLeuTyrLysGly : 204 ! !:!! !!..!! !! !|||||||||||| !! !||| !|||!..!.! rTyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProThrTyrSerAla 304568 : GTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCT : 304624 205 : LeuPheArgPheAsnThrSerAlaSerProValTyrGluThrIlePheAlaThrGlnM : 224 |||||| ! !!.!.||| ||||||:!!|||||| !:!!!:! !..!!!. LeuPheAspValGlnThr------SerProIleTyrGluLeuValTyrPheValHisC 304625 : TTATTTGACGTTCAAACA------AGCCCTATTTACGAATTGGTTTACTTCGTTCATT : 304678 225 : etMetSerGlyPheValValHisSerThrThrValThrThrCysSerTyrAlaValLe : 243 |||!!!|||!:!|||:!!:!!|||! !|||!.! !.!!|||.!!! |||!.!|| ysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLe 304679 : GCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCT : 304735 244 : uLeuAlaThrHisAlaCysGlyGlnLeuAspIleValValTyrLeuLeuLysArgLeu : 262 |!!!|||||||||||||||||||||:!!|||||||||:!!! !! !||| !||| uPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAspLeu 304736 : TTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGATCTT : 304792 263 : Ile : 263 :!! Val 304793 : GTC : 304797 vulgar: NvOr3 146 263 . KQ414889.1 304452 304797 + 189 M 64 192 G 2 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304453 304797 189 + . gene_id 18 ; sequence NvOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304453 304797 . + . KQ414889.1 exonerate:protein2genome:local exon 304453 304797 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 304453 304797 189 + . alignment_id 18 ; Query NvOr3 ; Align 304453 147 192 ; Align 304645 213 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 187 Query range: 66 -> 271 Target range: 236930 -> 237542 67 : ValLysThrLeuLysAsnAlaAlaValTyrIleLeuLeuSerPheLeuLeuValProG : 86 :!!... !:!! !|||!.! ! !|||! ! !:!! !|||! !:!!:!!||| IleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProC 236931 : ATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTT : 236988 87 : lyIleLeuHisIleValValGluGluGlyLysLeuLysAlaLysIleLeuLysThrGl : 105 !! ||||||:!!:!!:!!|||:!!|||! !!! ! .!!|||:!: !! ! !|| ysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGl 236989 : GTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGG : 237045 106 : yProMetIleLeuAsnThrMetAlaLeuLeuLysTyrSerValMetLeuPheArgLys : 124 | !!:!!! !! ! ..!.!...!:!!:!!!..|||!!!:!!:!!|||.!.|||::: ySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArg 237046 : TTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGT : 237102 125 : SerGlnIleGlnGluCysLeuLysGlnLeuGluSerAspTrpArgLysAlaGlyAsnA : 144 !.! |||!::.!.! !!!!!!.!!.:!!|||!!!|||||||||! !.!! ... LysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrThrArgL 237103 : AAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGacgagaa : 237162 145 : spGluLeuArgAlaLeuMetArgArgAsnThrAlaValGlyHisArgLeuSerArgVa : 163 ||| ::: :::||| !!:! !!.!! ! !!.!!!.. ! !:!!! ! ysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSe 237163 : aggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTC : 237219 164 : lCysValAlaThrPheTyrValGlyGlyIlePheTyrArgLeuIleLysThrLeuLeu : 182 !|||..! ! !.!.:!!! !||| !:!! ||| !!:!!!!:! !.!!! ! ! rCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaSerThr 237220 : TTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTCCACC : 237276 183 : ThrProIleArgTyrThr<->LysAspGlyLeuMetIleLysProLeuProSerProL : 201 ||| !:!! ! ..! !!. ! ! !!!::!:::: !||||||! !|||: ThrMetValValValValGlyAsnLysThrThrIleLeuArgValLeuProLeuProM 237277 : ACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTTGCGCGTGCTGCCCTTACCAA : 237336 202 : euTyrLysGlyLeuPheArgPheAsnThrSerAlaSerProValTyrGluThrIlePh : 220 !!||||||||||||.!!! ! !!:!!|||!:!.!! :!! !!!!:! !:!! ! etTyrLysGlyLeuLeuProValAspThrAsnThr------MetAsnAspIleValVa 237337 : TGTACAAAGGGCTCCTTCCAGTCGATACGAATACT------ATGAACGACATCGTTGT : 237387 221 : eAlaThrGlnMetMetSerGlyPheValValHisSerThrThrValThrThrCysSer : 239 ! !:!!|||.!.:!:|||||||||:!!!.!:!!!:!!:!.!!:!!!:!..! ||| lLeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnSerAlaIleSerValIleSer 237388 : TTTGTCACAATTTCTCTCCGGATTTATAGCGAACAACAGTGCGATCAGTGTTATAAGC : 237444 240 : TyrAlaValLeuLeuAlaThrHisAlaCysGlyGlnLeuAspIleValValTyrLeuL : 259 !.!! ! !|||.!!:!!||||||! !|||||||||..!:!:|||:!!! ! !: LeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuSerValValMetLeuSerI 237445 : CTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGAGCGTGGTTATGTTGTCGA : 237504 260 : euLysArgLeuIleGluAspAspGlyAspAsnGlyArg : 271 !!:!! !!!!:!:...!!:! !! !!..|||!:! leGluAspPheValSerGluAlaArgArgArgGlyLys 237505 : TCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAG : 237542 vulgar: NvOr3 66 271 . KQ414889.1 236930 237542 + 187 M 122 366 G 0 3 M 24 72 G 2 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236931 237542 187 + . gene_id 19 ; sequence NvOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236931 237542 . + . KQ414889.1 exonerate:protein2genome:local exon 236931 237542 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236931 237542 187 + . alignment_id 19 ; Query NvOr3 ; Align 236931 67 366 ; Align 237300 189 72 ; Align 237372 215 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 182 Query range: 30 -> 254 Target range: 294672 -> 295332 31 : GluGluAspValLysTyrAlaThrAlaLeuAsnArgArgIleAlaAsnAlaIleGlyI : 50 ..!.!.|||||| ! !!::! ! !! ! !||||||:!: !!!. !!||||||: ArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyL 294673 : AGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTC : 294730 51 : leTrpProIlePheThrSerThrGlyAlaArgLeuGlyPheAspIleCysValLysTh : 69 !!||||||:!!.!! !||| ! !::!!:!|||..! ! !:!!! :!!! euTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLe 294731 : TTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCT : 294787 70 : rLeuLysAsnAlaAlaValTyrIleLeuLeuSerPheLeuLeuValProGlyIleLeu : 88 !:!! ! ..!.!!:!! !:!!||| |||:!!||||||||| !! !! ! uIleAlaTrpCysThrLeuThrValLeu------PheValLeuValProCysGlyTyr 294788 : GATCGCGTGGTGTACGTTGACCGTACTG------TTCGTTTTAGTGCCATGCGGATAC : 294838 89 : HisIleValValGluGluGlyLysLeuLysAlaLysIleLeuLysThrGlyProMetI : 108 ! !||| !!.!.! ...:::||| |||!!: ! !||||||:!:: PheCysValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValL 294839 : TTCTGTGTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTAC : 294898 109 : leLeuAsnThrMetAlaLeuLeuLysTyrSerValMetLeuPheArgLysSerGlnIl : 127 !!! !::!! !:!::!!:!!|||!:!|||||| !:!::!!!!.!:!! ! !! !.! euTyrSerMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPh 294899 : TATACTCTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTT : 294955 128 : eGlnGluCysLeuLysGlnLeuGluSerAspTrpArgLysAlaGlyAsnAspGluLeu : 146 !:!!.!.|||:!!:!!.!.:!!|||!:!||||||!:! ! !! !||| |||! ! eLysHisCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHis 294956 : CAAGCATTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACAC : 295012 147 : ArgAlaLeuMetArgArgAsnThrAlaValGlyHisArgLeuSerArgValCysValA : 166 ||||||:!!|||! !!:!|||.!! !||| !!!.|||:!!!!! !!.!! !..! ArgAlaIleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrI 295013 : CGAGCGATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTA : 295072 167 : laThrPheTyrValGlyGlyIlePheTyrArgLeuIleLysThrLeuLeuThrProIl : 185 !! !.!!||| !..!!.!:!:! |||!.! !||| ......::: leIleIleTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAl 295073 : TTATAATCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgc : 295129 186 : eArgTyrThrLysAspGlyLeuMetIleLysProLeuProSerProLeuTyrLysGly : 204 ! ! !.!||| ! ..! !! !|||::: !!||||||! !||| !|||:!! aLeuGluAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGlu--- 295130 : tTTGGAGAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAG--- : 295186 205 : LeuPheArgPheAsnThrSerAlaSerProValTyrGluThrIlePheAlaThrGlnM : 224 |||||| ! :!!.!!! !:!!||||||..!||||||! !||| .!! !! . LeuPhe---ValAspAlaTyrSerSerProThrTyrGluIleIleArgThrHisLeuP 295187 : TTATTC---GTAGACGCTTATTCCAGTCCTACCTACGAGATCATAAGAACTCATCTCT : 295240 225 : etMetSerGlyPheValValHisSerThrThrValThrThrCysSerTyrAlaValLe : 243 !.:!:! !..!||| !!|||:!!!.!||| !||| ! ! !! !! ..!:!!! heValTyrSerPhePheValAsnLysThrGlyValLeuPheArgArgProCysLeuTr 295241 : TTGTTTACTCGTTCTTCGTCAACAAAACTGGTGTCCTATTTCGTCGCCCATGCCTATG : 295297 244 : uLeuAlaThrHisAlaCysGlyGlnLeuAspIle : 254 ! !|||||| !.!! !|||:!!:!! ! :!! pAsnAlaThrGlyThrAsnGlyGluValLysVal 295298 : GAATGCTACAGGTACAAATGGCGAGGTTAAAGTA : 295332 vulgar: NvOr3 30 254 . KQ414889.1 294672 295332 + 182 M 48 144 G 2 0 M 123 369 G 1 0 M 2 6 G 1 0 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294673 295332 182 + . gene_id 20 ; sequence NvOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294673 295332 . + . KQ414889.1 exonerate:protein2genome:local exon 294673 295332 . + . insertions 0 ; deletions 4 KQ414889.1 exonerate:protein2genome:local similarity 294673 295332 182 + . alignment_id 20 ; Query NvOr3 ; Align 294673 31 144 ; Align 294817 81 369 ; Align 295186 205 6 ; Align 295192 208 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 368 -> 434 Target range: 287069 -> 287338 369 : LysValGlyAlaLysThrTyrMetIleAsnTrpTyrAspLeuProProLysLysGlyL : 388 ||||||||| !..!||||||||||||:!!|||||| !|||||| !|||! !!.!! LysValGlyLeuSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysThrAlaG 287070 : AAAGTCGGCTTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGAAAAACAGCTC : 287127 389 : euCysIleGlyLeuIleIleSerValAlaHisSerProValGlnLeuThrAlaGlyLy : 407 ! !!:!: !||||||.!!:!!|||:!!:!!||| !!:!!:!!|||||||||||||| lnGlyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLy 287128 : AAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAA : 287184 408 : sMetLeuGluLeuSerMetTyrAsnPheGlyCys >>>> Target Intron 1 > : 419 |!!::!!!!:||||||:!: !!:!||| !! !! 71 bp sIleIleAspLeuSerLeuSerSerPheCysSer++ 287185 : GATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt...................... : 287222 420 : >>> IleMetLysSerThrAlaGlyTyrLeuAsnLeuLeuArgThrIleThr : 434 :!::!!||||||.!! !!.!||||||!:!||||||||||||:!!||| ++ValLeuLysSerAlaPheAlaTyrLeuSerLeuLeuArgThrLeuThr 287223 : ...agGTGTTGAAATCGGCATTCGCATATCTGAGCTTATTACGTACGCTAACC : 287338 vulgar: NvOr3 368 434 . KQ414889.1 287069 287338 + 158 M 50 150 5 0 2 I 0 67 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 287070 287338 158 + . gene_id 21 ; sequence NvOr3 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 287070 287219 . + . KQ414889.1 exonerate:protein2genome:local exon 287070 287219 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 287220 287221 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 287220 287290 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 287289 287290 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 287291 287338 . + . KQ414889.1 exonerate:protein2genome:local exon 287291 287338 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 287070 287338 158 + . alignment_id 21 ; Query NvOr3 ; Align 287070 369 150 ; Align 287291 419 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 296 -> 368 Target range: 260782 -> 261850 297 : PheIleSerSerValGluAspLeuMetAsnGlnIleCysLeuValGluIleLeuGlyG : 316 ||||||||| !!:!!||||||:!!||||||!:!||||||!!!:!!|||:!:!!! !! PheIleSerArgIleGluAspValMetAsnArgIleCysPheLeuGluLeuPheArgC 260783 : TTCATATCGCGTATCGAGGATGTGATGAACCGGATATGCTTCCTGGAGTTGTTCAGGT : 260840 317 : lySerThrIleLeuCysLeuThrSerPheTyrPheIleVal >>>> Target Int : 330 !!!!! ! !:!!|||||| !.!!!:!|||.!!:!!:!! 852 b ysThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeuMet++ 260841 : GCACTCTGGATATATGTCTACTTGGCTACTATATTCTTATGgt............... : 260884 331 : ron 1 >>>> AspLeuGlnSerAsnAspAlaLeuGlyLeuPheThrTyrMetValM : 345 p !!:! ! ..!.!.||| !! !..!|||! !||||||.!.:!!| ++GluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheMetM 260885 : ..........agGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCATGA : 261779 346 : etIleThrSerLeuIleAlaLeuLeuPheThrTyrCysTyrValGlyGluIleValSe : 364 ||:!:! !:!!:!! ! ! !:!!|||! ! !||||||:!!|||||||||:!!!! etLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLeuTh 261780 : TGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACTAAC : 261836 365 : rAspLysAlaLys : 368 !!!::!!!.!:!! rGluGlnValGln 261837 : GGAACAGGTACAA : 261850 vulgar: NvOr3 296 368 . KQ414889.1 260782 261850 + 144 M 33 99 5 0 2 I 0 848 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 260783 261850 144 + . gene_id 22 ; sequence NvOr3 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 260783 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260783 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261850 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261850 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 260783 261850 144 + . alignment_id 22 ; Query NvOr3 ; Align 260783 297 99 ; Align 261734 330 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 365 -> 431 Target range: 264723 -> 265001 366 : LysAlaLysLysValGlyAlaLysThrTyrMetIleAsnTrpTyrAspLeuProProL : 385 :!!..!||||||||||||! ! !..!|||||| ||||||||| !!|||||| !| GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 386 : ysLysGlyLeuCysIleGlyLeuIleIleSerValAlaHisSerProValGlnLeuTh : 404 || ! !||| !:!: !|||||||||! ! !:!! ! ! ! !!:!!!!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 405 : rAlaGlyLysMetLeuGluLeuSerMetTyrAsnPheGlyCys >>>> Target I : 419 ||||||||||!!:|||.!.:!!|||||||||!..|||.!! ! 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 420 : ntron 1 >>>> IleMetLysSerThrAlaGlyTyrLeuAsnLeuLeuArg : 431 bp :!!!!:||||||:!! ! !|||||||||||||||||| ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArg 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGC : 265001 vulgar: NvOr3 365 431 . KQ414889.1 264723 265001 + 132 M 53 159 5 0 2 I 0 76 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265001 132 + . gene_id 23 ; sequence NvOr3 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265001 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265001 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265001 132 + . alignment_id 23 ; Query NvOr3 ; Align 264724 366 159 ; Align 264963 419 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 368 -> 422 Target range: 244664 -> 244826 369 : LysValGlyAlaLysThrTyrMetIleAsnTrpTyrAspLeuProProLysLysGlyL : 388 |||||||||! ! !..!||||||! !:!!|||||| !!||||||! !!:!!:! !| LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 244665 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 244722 389 : euCysIleGlyLeuIleIleSerValAlaHisSerProValGlnLeuThrAlaGlyLy : 407 || !:!! !|||||||||!.! !:!!:!!! ! !|||:!!:!!||||||||||| euAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleThrAlaGlyLy 244723 : TCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCACCGCTGGAAA : 244779 408 : sMetLeuGluLeuSerMetTyrAsnPheGlyCysIleMetLysSer : 422 |:!:|||.!.:!!|||:!:|||!..|||||| !:!!! :!!!!! sValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThr 244780 : AGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 244826 vulgar: NvOr3 368 422 . KQ414889.1 244664 244826 + 117 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244665 244826 117 + . gene_id 24 ; sequence NvOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244665 244826 . + . KQ414889.1 exonerate:protein2genome:local exon 244665 244826 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244665 244826 117 + . alignment_id 24 ; Query NvOr3 ; Align 244665 369 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 368 -> 422 Target range: 238634 -> 238796 369 : LysValGlyAlaLysThrTyrMetIleAsnTrpTyrAspLeuProProLysLysGlyL : 388 |||||||||! ! !..!||||||! !:!!|||||| !!||||||! !!:!!:! !| LysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleL 238635 : AAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCC : 238692 389 : euCysIleGlyLeuIleIleSerValAlaHisSerProValGlnLeuThrAlaGlyLy : 407 || !:!! !|||||||||!.! !:!!:!! ! !|||:!!:!!||||||||||| euAspLeuIleLeuIleIleLysArgSerAsnValValValLysValThrAlaGlyLy 238693 : TCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCACCGCTGGAAA : 238749 408 : sMetLeuGluLeuSerMetTyrAsnPheGlyCysIleMetLysSer : 422 |:!:|||.!.:!!|||:!:|||!..|||||| !:!!! :!!!!! sValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThr 238750 : AGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 238796 vulgar: NvOr3 368 422 . KQ414889.1 238634 238796 + 114 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238635 238796 114 + . gene_id 25 ; sequence NvOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238635 238796 . + . KQ414889.1 exonerate:protein2genome:local exon 238635 238796 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238635 238796 114 + . alignment_id 25 ; Query NvOr3 ; Align 238635 369 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 205 -> 272 Target range: 202709 -> 202910 206 : PheArgPheAsnThrSerAlaSerProValTyrGluThrIlePheAlaThrGlnMetM : 225 |||! !.!!:!!..!!!! !||||||||| !!|||! !.!!|||:!!! !!:!!!:: PheIleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleV 202710 : TTTATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCG : 202767 226 : etSerGlyPheValValHisSerThrThrValThrThrCysSerTyrAlaValLeuLe : 244 !::!!! !.!!:!!:!!|||.!!..!|||||| !.!!|||!!!! .!!!.!|||!! alAlaValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPh 202768 : TAGCTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTT : 202824 245 : uAlaThrHisAlaCysGlyGlnLeuAspIleValValTyrLeuLeuLysArgLeuIle : 263 !|||..!|||! !|||||||||:!!|||:!!:!!:!! !! !|||:!!!.!|||!!: eAlaValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMet 202825 : TGCGGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATG : 202881 264 : GluAspAspGlyAspAsnGlyArgLeu : 272 !!:! ! !..!|||! .!!!:!:!! AspGlyArgSerAspMetSerLysMet 202882 : GATGGTCGTTCGGATATGAGTAAAATG : 202910 vulgar: NvOr3 205 272 . KQ414889.1 202709 202910 + 111 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202710 202910 111 + . gene_id 26 ; sequence NvOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202710 202910 . + . KQ414889.1 exonerate:protein2genome:local exon 202710 202910 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202710 202910 111 + . alignment_id 26 ; Query NvOr3 ; Align 202710 206 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 369 -> 416 Target range: 206251 -> 206392 370 : ValGlyAlaLysThrTyrMetIleAsnTrpTyrAspLeuProProLysLysGlyLeuC : 389 |||||| !! !:!!! !! !:!:||||||||| !|||||| !!:! ! !.!! !! ValGlyLeuThrSerCysThrValAsnTrpTyrArgLeuProAsnArgHisAlaArgS 206252 : GTGGGATTGACATCTTGCACGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCT : 206309 390 : ysIleGlyLeuIleIleSerValAlaHisSerProValGlnLeuThrAlaGlyLysMe : 408 !!!: !|||||||||:!!:!!:!!:!!! !|||:!!:!!||||||||||||||||| erMetIleLeuIleIleAlaMetSerAsnTyrProIleLysLeuThrAlaGlyLysMe 206310 : CTATGATACTGATAATTGCCATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAAT : 206366 409 : tLeuGluLeuSerMetTyrAsnPhe : 416 |!!!|||:!!|||:!: !!:!||| tPheGluMetSerLeuAlaSerPhe 206367 : GTTCGAAATGTCTTTAGCTAGTTTC : 206392 vulgar: NvOr3 369 416 . KQ414889.1 206251 206392 + 107 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206252 206392 107 + . gene_id 27 ; sequence NvOr3 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 206252 206392 . + . KQ414889.1 exonerate:protein2genome:local exon 206252 206392 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206252 206392 107 + . alignment_id 27 ; Query NvOr3 ; Align 206252 370 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 163 -> 262 Target range: 290179 -> 290476 164 : ThrLeuAsnGluSerLysLysLeuArgProLeuTyrMetArgSerTyr<->PheIleT : 182 !:!:!!|||! !:! !! :!!||||||||| ! ! !.!!||| .!!! SerValAsnGlyAsnValThrIleArgProLeuThrTyrProGlyTyrGluGluPheP 290180 : AGCGTGAACGGTAACGTGACTATCAGACCTCTAACTTATCCCGGTTACGAGGAGTTCT : 290237 183 : yrAspValGlnLysThrProValTyrGluIleIleTrpIlePheGlnPheValSerMe : 201 :!||||||||||||!:!|||!.!|||||||||:!!!:: !.!.!!.! !|||! !:! heAspValGlnLysSerProAlaTyrGluIleValPheCysMetHisCysValTyrVa 290238 : TCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGT : 290294 202 : tGlyValAlaThrPheThrPheMetAlaValAspSerLeuPheAlaValLeuMetMet : 220 : !:!!.!!.!! !! ! ||||||!.! !!|||||| .!!:!!!!! ! lMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrThrIlePheAlaThr 290295 : CATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACT : 290351 221 : HisLeuCysGlyGlnLeuIleAsnLeuGlnGluArgLeuLysAsnPheThrAsnMetL : 240 ||| !|||||||||:!!! ! ! ! ! !||||||:!!:!!.!.|||!!.! HisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAspLeuThrLysArg- 290352 : CATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGATCTGACAAAGAGA- : 290411 241 : euGlyGlnThrLysThrArgAsnPheSerTyrGlnLeuSerThrIleValSerArgHi : 259 |||..! ! ! !!:!... ! ||| !!!::|||:!!..!:!!|||||| !!|| --GlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValValValSerGlyHi 290412 : --GGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTGTGAGCGGTCA : 290465 260 : sGluGlnLeu : 262 |! !:!!:!! sValGluIle 290466 : CGTGGAGATC : 290476 vulgar: NvOr12 163 262 . KQ414889.1 290179 290476 + 106 M 16 48 G 0 3 M 60 180 G 1 0 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 290180 290476 106 + . gene_id 1 ; sequence NvOr12 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 290180 290476 . + . KQ414889.1 exonerate:protein2genome:local exon 290180 290476 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 290180 290476 106 + . alignment_id 1 ; Query NvOr12 ; Align 290180 164 48 ; Align 290231 180 180 ; Align 290411 241 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr12 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 317 -> 390 Target range: 258315 -> 258624 318 : LeuCysPheAlaPheSerLeuPheValTyrCysTyrIleAlaGluIleLeuArgIleG : 337 :!!! ...:::|||::::::|||||| |||||||||!.!|||||||||! ! !: IleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluG 258316 : ATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATTAACAGAAC : 258373 338 : lu >>>> Target Intron 1 >>>> SerMetGluIleGlyAsnAlaAlaTyr : 346 !! 90 bp !!!! !:!!:!!|||:!!!.!!.!||| ln++ ++CysLysLysValGlyAspValValTyr 258374 : AGgt.........................agTGCAAGAAAGTTGGCGACGTGGTTTAT : 258490 347 : HisCysAspTrpTyrAspLeuSerAlaPheGluArgArgLeuPheIleLeuThrIleI : 366 ||||||||| !!||| !!! ! ..!! !! ! !!!.||||||..!||| MetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLeuValIleA 258491 : ATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTTGGTAATCG : 258550 367 : leArgSerLysThrProPheGluIleThrAlaGlyLysPheAlaAlaPheSerLeuGl : 385 !||||||!....! ! !!:!!|||||||||||||||||| ...|||:!! ! laArgSerSerValValValGlnIleThrAlaGlyLysPhePheHisMetSerIleTy 258551 : CACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttcacatGTCCATTTA : 258607 386 : uPheTyrCysSerIle : 390 !:! !!..!:!: rThrPheSerAspVal 258608 : CACATTCAGCGATGTG : 258624 vulgar: NvOr12 317 390 . KQ414889.1 258315 258624 + 102 M 20 60 5 0 2 I 0 86 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258316 258624 102 + . gene_id 2 ; sequence NvOr12 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 258316 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258316 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258624 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258316 258624 102 + . alignment_id 2 ; Query NvOr12 ; Align 258316 318 60 ; Align 258466 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr15 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 8 -> 219 Target range: 194168 -> 194795 9 : GlnThrAlaPheSerValThrArgPheValMetArgPheGlnGlyIleTrpProGlyV : 28 :!! !||| !! !!|||.!!!:! :!!:!:! ! |||||||||||| !!! GluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProArgG 194169 : GAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAAGGG : 194226 29 : alAspLysProArgThrGlyPheSerArgPheGlnPheIleProAlaAlaLeuMetMe : 47 !|||...! !||| ! !! !! !!! !||| ! ! !!.!!.!!!! :! luAspSerLeuArgAspArgValArgLeuPheAlaGlnThrGlyValValPheAlaLe 194227 : AGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTTCGCTTT : 194283 48 : tValPhePheIleAsnAlaValGlnThrMetGluLeuThrArgValGlyGlyAspLeu : 66 !:!!! !|||:!! !.! !!!...!!!: ! ! ! !! ! !!! !|||||| uMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCysGluAspLeu 194284 : GATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAGGATCTG : 194340 67 : AsnMetIleIleAspIleLeuThrPheAlaAspIleProIlePheIleAlaLeuValL : 86 !..! ! !!!: ! :!!:!!.!! |||.!.:!: !! !.!.:!:|||:!!:!!| ThrArgTyrMetLysValIleAla---AlaGlnValPheSerLeuLeuAlaIleIleL 194341 : ACGAGGTACATGAAGGTAATCGCG---GCGCAAGTGTTCAGTCTGTTGGCGATCATCA : 194397 87 : ysHisValGlyIleAlaTyrAsnAsnLysValLeuTyrLysLeuLeuTyrLeuIleSe : 105 || ! ! !!!: ! |||!..|||! !:!! ! !||| !!!:.. ysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGluMetGl 194398 : AGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGATGGA : 194454 106 : rGluAspTrpLysGluValThrLysGluSerGluLysLysValMetTrpGlnLysAla : 124 ! !.!.!::!:!!!:||| ! |||..!!!:::!:!!|||||| !.!. ||| uThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsnCysAla 194455 : GACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGCGCG : 194511 125 : ArgLeuSerArgIlePheThrMetIleGluValSerLeuGlyLeuGlyArgLeuPheI : 144 !:!:!!.!!|||.!!||||||! :!: ! :!!.!!|||..!! !||| !! !!!. LysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaLeuP 194512 : AAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTTTGC : 194571 145 : leHisThrIleArgMetThrTyrAlaMetLeuHisProThrSerPheAspProThrGl : 163 :!! !|||! !:!: !! ! ! !... !..!!.! ||| !!:! roTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGluAspAsnSerTh 194572 : CGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAACAGTAC : 194628 164 : yLysLeuIleArgProSerTyrMetArgGlyTyrPheIleTyrAspSerGlnSerThr : 182 !:!!:!! !! !||| |||:!!!!!..!||| !!.!!!:!! ! !:!!..!:!! rGlnIleProLeuPro---TyrLeuSerAsnTyrValPhePheAlaIleGluAspSer 194629 : TCAGATACCTCTGCCA---TATTTGAGCAACTATGTTTTCTTCGCGATCGAAGACTCG : 194682 183 : ProIleTyrGluIleThrTrpGlyCysGlnPheValAlaThrAlaPheGlyGlyCysA : 202 ||||||||||||||||||!::! !! |||.!.:!! !!:!::!.!! ! !! . ProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuSerT 194683 : CCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGTCGA : 194742 203 : laPheAlaSerAlaAspAlaLeuPheValAlaLeuValPheHisLeuCysGly : 219 !! !..!.!! ! !!::!||| !!!.!.!!:!!:!!.!.|||! !|||||| hrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGly 194743 : CGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGC : 194795 vulgar: NvOr15 8 219 . KQ414889.1 194168 194795 + 117 M 66 198 G 1 0 M 93 279 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194169 194795 117 + . gene_id 1 ; sequence NvOr15 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194169 194795 . + . KQ414889.1 exonerate:protein2genome:local exon 194169 194795 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 194169 194795 117 + . alignment_id 1 ; Query NvOr15 ; Align 194169 9 198 ; Align 194367 76 279 ; Align 194646 170 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 336 Query range: 177 -> 358 Target range: 285979 -> 286989 178 : ThrAspAsnIleAspValGluProValArgValLeuSerTyrProIleTyr<->GlyL : 196 |||!!:! !|||||| !||| !!|||||| !! !:!!!:!||||||||| |||| ThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyL 285980 : ACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCC : 286037 197 : euLeuAlaLysLeuAspTyrValThrLeuLeuLeuValGlnPhe<-><-><->ValAl : 212 |||||! ! !! ! ! ! !:!!!!! !:!!||||||||| :!!|| euLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAl 286038 : TTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGC : 286094 213 : aGlyPheValLeuTyrThrIleThrIleAlaSerCysSerLeuAlaAlaValPheAla : 231 |!.!||||||:!!|||:!!:!!|||:!!!.!:!!|||||||||||||||||||||!.! aAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheVal 286095 : CGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTC : 286151 232 : AsnHisValCysGlyGlnLeuGluIleValMetSerLeuLeuArgAspPheValHisA : 251 ! |||||||||||||||!!!..!|||:!!:!!!!! !||| ! ! .!!||| !!! MetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspG 286152 : ATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACG : 286211 252 : spAsnGlu{A} >>>> Target Intron 1 >>>> {sp}AsnProArgIleTy : 259 :!!{|} 375 bp {||}||| ! !!:!!! lyValLys{A}+- ++{sp}AsnLeuCysValCy 286212 : GAGTGAAA{G}gg.........................ag{AC}AATTTGTGTGTATG : 286610 260 : rAlaLeuAlaAspAspAlaAlaThrValGluArgSerArgSerAspLysPheAlaGlu : 278 ! !:!!!.!:!! ..! ! !:!! ! !!:!! !! !!!:!!. |||! sIleIleValAsnLeuCysIleArgIleIleValAsnIleTyrGluAsnAlaAlaGly 286611 : CATCATAGTAAATTTATGTATACGCATCATAGTAAATATCTATGAGAACGCAGCTGGC : 286667 279 : IleValGlnArgHisLeuArgAlaLeuAsnPheAlaSerArgValGluLysAsnLeuA : 298 ! ! !!:! ! !! ! !!!!!:!||| !|||!:!:!!||| ! !|||| ***GlnTrpLysIleArgThrIlePheSerPheIleSerGlnIleGluGlyLeuLeuA 286668 : TAACAGTGGAAAATACGAACGATTTTCAGTTTTATATCGCAAATCGAGGGGCTCCTAA : 286727 299 : snAlaIleCysPheValGluPheIleGlyCysThrLeuAsnIleCysPheLeuGluTy : 317 ||! !||||||||||||||| ! ||||||||||||||||||||||||||||||! !|| snGluIleCysPheValGluValIleGlyCysThrLeuAsnIleCysPheLeuGlyTy 286728 : ACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGGGATA : 286784 318 : rTyrPheIleThr >>>> Target Intron 2 >>>> GluTrpGluAsnGlnA : 327 ||||!!.:!:||| 80 bp |||||||||.!..... rTyrLeuLeuThr++ ++GluTrpGluGlnSerG 286785 : TTATTTACTGACGgt.........................agGAATGGGAGCAAAGTG : 286894 328 : snThrValSerThrMetThrTyrCysIleLeuLeuIleSerPheIlePheAsnIlePh : 346 !.|||:!!.!!|||!!:|||||||||! ||||||:!!||||||! ||||||:!!|| luThrIleGlyThrIleThrTyrCysThrLeuLeuValSerPheThrPheAsnValPh 286895 : AAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCACGTTCAACGTTTT : 286951 347 : eIlePheCysTyrIleGlyGluLeuLeuThrGluGln : 358 ||||.!!|||||||||||||||:!!|||:!!|||||| eIleLeuCysTyrIleGlyGluIleLeuSerGluGln 286952 : CATACTCTGTTACATCGGTGAAATTCTCTCCGAACag : 286989 vulgar: NvOr5 177 358 . KQ414889.1 285979 286989 + 336 M 17 51 G 0 3 M 16 48 G 0 9 M 43 129 S 0 1 5 0 2 I 0 371 3 0 2 S 1 2 M 67 201 5 0 2 I 0 76 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 285980 286989 336 + . gene_id 1 ; sequence NvOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 285980 286220 . + . KQ414889.1 exonerate:protein2genome:local exon 285980 286220 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286221 286222 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local intron 286221 286595 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286594 286595 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286596 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286596 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 285980 286989 336 + . alignment_id 1 ; Query NvOr5 ; Align 285980 178 51 ; Align 286034 195 48 ; Align 286091 211 129 ; Align 286598 255 201 ; Align 286879 322 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 317 Query range: 204 -> 412 Target range: 232996 -> 235147 205 : LeuLeuLeuValGlnPheValAlaGlyPheValLeuTyrThrIleThrIleAlaSerC : 224 :!!!!!:!!:!!|||! !:!!:!!||||||:!!:!! !!:!!:!!|||:!:!.!:!!| MetPheValLeuGlnCysLeuSerGlyPheIleValAsnSerValThrValGlyAlaC 232997 : ATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCT : 233054 225 : ysSerLeuAlaAlaValPheAlaAsnHisValCysGlyGlnLeuGluIleValMetSe : 243 ||.!!|||!.!||||||.!.|||! |||!.!||||||||||||.!.:!:|||||||| ysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGlnLeuAsnValValMetSe 233055 : GCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACAGCTGAACGTGGTGATGTC : 233111 244 : rLeuLeuArgAspPhe >>>> Target Intron 1 >>>> ValHisAspAsnG : 253 | !||| !|||!!. 1273 bp !.!:!! !:::! rLysLeuAspAspLeu++ ++AlaAsnPheSerA 233112 : GAAATTGGACGATTTGgt.........................agGCCAACTTTTCAG : 234414 254 : luAspAsnProArgIleTyrAlaLeuAlaAspAspAlaAlaThrValGluArgSerAr : 272 :!!! ! ||| ::: !!::!! !!.! ! ::: |||:: laProHisArgThrIleCysAsnIleIleGluAsnIleValPheHisAspPheSerLy 234415 : CTCCGCACCGTactatttgtaatattatcGAGAATATAGTTTTTcatgatttttcgaa : 234471 273 : gSerAspLysPheAlaGluIleValGlnArgHisLeuArg<->AlaLeuAsnPheAla : 290 : |||!:: !! !! ! ! ! !||| !!.! .!!!!!!:!||| ! sTyrAlaLysTrpGlnValTyrGlyTyrLeuHisGlyAsnValThrPheSerPheIle 234472 : atatgcAAAGTGGCAAGTTTACGGCTATCTACATGGAAATGTTACTTTCAGTTTTATA : 234528 291 : SerArgValGluLysAsnLeuAsnAlaIleCysPheValGluPheIleGlyCysThrL : 310 !!!.!:!!|||!!. !:!!||| !||||||.!.||||||!!.:!!|||||||||| ArgAsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuValGlyCysThrL 234529 : CGGAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGATGCACGT : 234588 311 : euAsnIleCysPheLeuGluTyrTyrPheIleThr >>>> Target Intron 2 : 322 |||||!!:|||.!.||||||||||||!!.:!!||| 189 bp euAsnMetCysMetLeuGluTyrTyrLeuLeuThr++ 234589 : TGAACATGTGCATGCTCGAGTATTATTTACTCACGgt..................... : 234626 323 : >>>> GluTrpGluAsnGlnAsnThrValSerThrMetThrTyrCysIleLeuLeuI : 339 ||| ......:::... ..!||| ||| !|||:!!! !: ++GluLysSerLysGluLysLeuAlaSer---------TyrValIleValTyrV 234627 : ....agGAAAAgtcgaaggaaaaattagCTTCA---------TACGTCATCGTGTACG : 234855 340 : leSerPheIlePheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuThrGluGl : 358 !:|||.!.! !||||||||||||||||||||||||||||||||| !||||||||||| alSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuThrGluGl 234856 : TGTCCATGACATTtaatatattcatattttgttACATCGGAGAGACGCTTACAGAGCA : 234912 359 : n >>>> Target Intron 3 >>>> SerLysLysIleGlyGluValThrTyrA : 368 | 74 bp !!!! |||:!!|||||| !..!||| n++ ++CysThrLysValGlyGluLysValTyrM 234913 : Ggt.........................agTGTACCAAAGTCGGAGAAAAAGTGTACA : 235016 369 : laIleAsnTrpTyrThrLeuSerGlyLysArgAlaValAspLeuIleMetIleIleMe : 387 !! !.!.|||||| !||| !! !|||! !|||:!!! !|||:!!||||||||| etThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIleIleSe 235017 : TGACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGATCATCTC : 235073 388 : tIleAlaSerCysTyrProAlaArgIleThrAlaGlyLysMetValAsnLeuSerLeu : 406 ! :!!||| !!:!|||||||||||||||.!.:!!.!.:!!|||:!! rArgSerSerMetVal---IleLysIleThrAlaGlyLysPheLeuGlnMetSerVal 235074 : CAGGTCGAGCATGGTG---ATAAAAATCACCGCTGGAAAATTCCTACAAATGTCTGTC : 235127 407 : GlySerPheCysAsnVal : 412 !.!!!!||| !!:!!||| AlaThrPheGlyAspVal 235128 : GCAACATTTGGCGATGTG : 235147 vulgar: NvOr5 204 412 . KQ414889.1 232996 235147 + 317 M 44 132 5 0 2 I 0 1269 3 0 2 M 37 111 G 0 3 M 36 108 5 0 2 I 0 185 3 0 2 M 9 27 G 3 0 M 25 75 5 0 2 I 0 70 3 0 2 M 34 102 G 1 0 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232997 235147 317 + . gene_id 2 ; sequence NvOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232997 233128 . + . KQ414889.1 exonerate:protein2genome:local exon 232997 233128 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 233129 233130 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233129 234401 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234400 234401 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234402 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234402 234623 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 232997 235147 317 + . alignment_id 2 ; Query NvOr5 ; Align 232997 205 132 ; Align 234402 249 111 ; Align 234516 286 108 ; Align 234813 322 27 ; Align 234840 334 75 ; Align 234989 359 102 ; Align 235091 394 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 314 Query range: 287 -> 427 Target range: 263671 -> 265010 288 : AsnPheAlaSerArgValGluLysAsnLeuAsnAlaIleCysPheValGluPheIleG : 307 !:!||| !..!|||:!!:!!!!. :!!!:!.!!|||||||||||||||!!..!! SerPheIleAspArgIleLysAsnValMetSerThrIleCysPheValGluLeuPheL 263672 : AGTTTCATAGATCGTATTAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCA : 263729 308 : lyCysThrLeuAsnIleCysPheLeuGluTyrTyrPheIleThr >>>> Target : 322 !..!||||||:!!||||||.!.|||! ||||||.!.:!!||| 76 ysAlaThrLeuAspIleCysMetLeuGlyTyrTyrIleLeuThr++ 263730 : AGGCTACGCTGGATATATGCATGCTAGGTTACTACATACTTACGgt............ : 263776 323 : Intron 1 >>>> GluTrpGluAsnGlnAsnThrValSerThrMetThrTyrCysI : 336 4 bp |||||||||!:!!!.::: ::: ||||||! !! ++GluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheM 263777 : .............agGAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCA : 264580 337 : leLeuLeuIleSerPheIlePheAsnIlePheIlePheCysTyrIleGlyGluLeuLe : 355 !::!!|||||||||.!. ! !|||||||||:!!.!.|||||||||||||||:!!|| etIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLe 264581 : TGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATT : 264637 356 : uThrGluGln >>>> Target Intron 2 >>>> SerLysLysIleGlyGluV : 365 |||||||||| 78 bp !!!||||||:!!||||||| uThrGluGln++ ++CysLysLysValGlyGluV 264638 : GACTGAGcaggt.........................agTGTAAGAAAGTTGGTGAGG : 264745 366 : alThrTyrAlaIleAsnTrpTyrThrLeuSerGlyLysArgAlaValAspLeuIleMe : 384 ||..!||| ! ||||||||| !||| !! !||| ! !:!!|||||||||:! alValTyrMetSerAsnTrpTyrTyrLeuProTyrLysAspIleLeuAspLeuIleLe 264746 : TGGTTTACATGTCGAATTGGTATTACTTACCCTACAAAGATATCCTTGATCTGATTCT : 264802 385 : tIleIleMetIleAlaSerCysTyrProAlaArgIleThrAlaGlyLysMetValAsn : 403 :||||||:!:! !:!!||| !!:!.!!||||||||||||!!::!!:!! uIleIleLeuArgSerSerValVal---PheLysPheThrAlaGlyLysIleLeuHis 264803 : CATCATTTTAAGATCCAGCGTGGTG---TTTAAATTCACCGCTGGAAAGATACTTCAC : 264856 404 : LeuSerLeuGlySerPheCysAsn >>>> Target Intron 3 >>>> ValIl : 413 :!!|||:!! !!!!||| !!:!! 80 bp ||||| MetSerMetTyrThrPheSerAsp++ ++ValIl 264857 : ATGTCCATGTACACATTCAGTGACgt.........................aggTAAT : 264966 414 : eLysThrSerAlaThrTyrLeuAsnLeuLeuArgThrMetMet : 427 ||||:!!||| !||||||||||||||||||||| !! !||| eLysSerSerPheThrTyrLeuAsnLeuLeuArgGlnThrMet 264967 : CAAATCCTCTTTCACGTACTTAAACTTACTTCGCCAAACGATG : 265010 vulgar: NvOr5 287 427 . KQ414889.1 263671 265010 + 314 M 34 102 5 0 2 I 0 760 3 0 2 M 37 111 5 0 2 I 0 74 3 0 2 M 34 102 G 1 0 M 18 54 5 0 2 I 0 76 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 263672 265010 314 + . gene_id 3 ; sequence NvOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 263672 263773 . + . KQ414889.1 exonerate:protein2genome:local exon 263672 263773 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263774 263775 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263774 264537 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264536 264537 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264538 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264648 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264649 264650 . + . intron_id 2 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 264649 264726 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264725 264726 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264727 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264727 264882 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265010 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265010 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 263672 265010 314 + . alignment_id 3 ; Query NvOr5 ; Align 263672 288 102 ; Align 264538 322 111 ; Align 264727 359 102 ; Align 264829 394 54 ; Align 264963 412 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 296 Query range: 7 -> 157 Target range: 284523 -> 284976 8 : TyrAlaValGlnLeuAsnArgLeuPheLeuThrProIleGlyValTrpProIleGlyA : 27 |||::!||||||:!!||||||! !||||||! !||||||||||||||||||:!!.!!! TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 28 : rgAspAlaProLeuValGlnArgLeuLeuLysArgLeuAlaIleIleGlyCysTyrLe : 46 ! !!.! !! !:!!:!!!:!:!! !... !:!! ! :!! ! !!! !!! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 47 : uLeuMetSerTyrLeuLeuValProThrAlaLeuHisThrPheLeuGluGluPro<-> : 65 !|||!!:.!!!:!|||||||||||| !|||||| !||| ! |||!!::!! !! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 66 : AspProAlaIleLysLeuLysLeuIleGlyProMetSerPheHisLeuMetAlaIleG : 84 |||! !! !! |||:!!|||:!!|||||||||:!!|||||| !:!!|||||| AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 85 : lyLysTyrValSerLeuValGlyArgThrGluGluIleSerAlaCysPheGluHisVa : 103 !|||||| !! !|||:!!..!||| !! :!!|||.!! !||| ! :!! !!:! leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 104 : lGluGluAspTrpLysMetTyrSerAspLysAsnAlaLysProGluLeuGluMetMet : 122 !...! !||||||...:!: !... ! !:: ::: ||| |||:::||| eArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMet 284813 : TCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTG : 284869 123 : LysArgAsnAlaLysIleGlyArgPheLeuIleTyrLeuCysAlaAlaPheMetTyrG : 142 !:! !!:!|||!:!|||||||||! !||| !!!!||||||!.!|||||||||. ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrS 284870 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATT : 284929 143 : lyGlyGlyPhePheTyrHisMetIleMetProLeuSerValGlyArg : 157 .!||||||||||||||| !! !:!:|||||||||!!!..!! !||| erGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArg 284930 : CCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGC : 284976 vulgar: NvOr5 7 157 . KQ414889.1 284523 284976 + 296 M 57 171 G 0 3 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 284976 296 + . gene_id 4 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284524 284976 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 284976 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284524 284976 296 + . alignment_id 4 ; Query NvOr5 ; Align 284524 8 171 ; Align 284698 65 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 275 Query range: 8 -> 163 Target range: 221381 -> 221837 9 : AlaValGlnLeuAsnArgLeuPheLeuThrProIleGlyValTrpProIleGlyArgA : 28 ::!|||||||||!:!|||! !.!!|||! !||||||||||||||||||! !..! !: SerValGlnLeuSerArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaA 221382 : AGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCA : 221439 29 : spAlaProLeuValGlnArgLeuLeuLysArgLeuAlaIleIleGlyCysTyrLeuLe : 47 !! ! !! !|||:!!|||! !||| ! !!||| !! !:!!! !|||||| !|| snIleSerThrValGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLe 221440 : ACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCT : 221496 48 : uMetSerTyrLeuLeuValProThrAlaLeuHisThrPheLeuGluGluProAspPro : 66 |!!:!!!!:!|||||||||||| !::!|||:!!..!.!!||||||! ! !||| ! uIleThrPheLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspVal 221497 : GATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTC : 221553 67 : AlaIleLysLeuLysLeuIleGlyProMetSerPheHisLeuMetAlaIleGlyLysT : 86 !! !!:!:!!||||||:!:||||||:!!|||||| !:!!||||||.!! !|||| TyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysT 221554 : TACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGT : 221613 87 : yrValSerLeuValGlyArgThrGluGluIleSerAlaCysPheGluHisValGluGl : 105 || ! !|||:!! ! ! !.!.!!:||| !!! !|||.!!|||!.!:!!||| yrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTr 221614 : ATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATG : 221670 106 : uAspTrpLysMetTyrSerAspLysAsnAlaLysProGluLeuGluMetMetLysArg : 124 !|||||||||! !!!! !!...!!.! !||| !!:!!:|||! !..! pAspTrpLysAsnIleThrTyrSerLysAspLys---------AspIleMetIleGlu 221671 : GGATTGGAAGAATATCACTTACTCCAAGGATAAG---------GATATAATGATAGAG : 221718 125 : AsnAlaLysIleGlyArgPheLeuIleTyrLeuCysAlaAlaPheMetTyrGlyGlyG : 144 ||||||! .!!|||||| |||||| :!!|||.!! !|||||||||.!!||| AsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheMetTyrSerGlyP 221719 : AACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGTACAGTggtt : 221778 145 : lyPhePheTyrHisMetIleMetProLeuSerValGlyArgLeuValThrLysGlnVa : 163 ||||||:::::: !!!:|||!!!|||||||||!:!:!! !.!!:!!.!.|| heValPheTyrTyrIleAlaIleProPheSerValGlyLysIleProAlaGlnAspVa 221779 : tcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGCGCAGGATgt : 221835 164 : l : 163 | l 221836 : g : 221837 vulgar: NvOr5 8 163 . KQ414889.1 221381 221837 + 275 M 108 324 G 3 0 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221382 221837 275 + . gene_id 5 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221382 221837 . + . KQ414889.1 exonerate:protein2genome:local exon 221382 221837 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 221382 221837 275 + . alignment_id 5 ; Query NvOr5 ; Align 221382 9 324 ; Align 221706 120 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 274 Query range: 6 -> 161 Target range: 217171 -> 217627 7 : HisTyrAlaValGlnLeuAsnArgLeuPheLeuThrProIleGlyValTrpProIleG : 26 ::: ::!:!!|||! !||||||! !!!.|||! !|||!!:|||:!!||||||! !. AsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnS 217172 : aatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACT : 217229 27 : lyArgAspAlaProLeuValGlnArgLeuLeuLysArgLeuAlaIleIleGlyCysTy : 45 .!||| !.!! !! ! !!:!!:!:!!||| ! !:!||| !! ! ! !||||| erArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTy 217230 : CACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTA : 217286 46 : rLeuLeuMetSerTyrLeuLeuValProThrAlaLeuHisThrPheLeuGluGluPro : 64 | !|||!!:|||!:!|||!!!|||||| !:!!:!!:!!..!|||||||||! ! rGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeuGluValGlu 217287 : CGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAA : 217343 65 : AspProAlaIleLysLeuLysLeuIleGlyProMetSerPheHisLeuMetAlaIleG : 84 |||! ! ! !||||||||||||.!!||||||:!!! !||| !:!!||||||.!!! AspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValMetAlaPheV 217344 : GATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCG : 217403 85 : lyLysTyrValSerLeuValGlyArgThrGluGluIleSerAlaCysPheGluHisVa : 103 !|||||| !||||||:!!! !!.!! !! !!!:||| !!! !||| ! ..!...:! alLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCysValArgArgIl 217404 : TCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAAT : 217460 104 : lGluGluAspTrpLysMetTyrSerAspLysAsnAlaLysProGluLeuGluMetMet : 122 !|||..!||||||!:! :!! !....!:!! !!!: !||| !||| eGluArgAspTrpArg---------AsnValArgCysGluLysAspArgGluAlaMet 217461 : CGAACGGGACTGGAGG---------AATGTCAGATGCGAGAAAGACAGGGAGGCGATG : 217508 123 : LysArgAsnAlaLysIleGlyArgPheLeuIleTyrLeuCysAlaAlaPheMetTyrG : 142 ! ! !||||||!!..!!|||||| |||:!! ||||||.!! !|||||||||. IleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrS 217509 : ATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACA : 217568 143 : lyGlyGlyPhePheTyrHisMetIleMetProLeuSerValGlyArgLeuValThrLy : 161 !!||| ||||||:::::: !!!:|||:!!||||||||||||:!!:!!:!!:! erGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGl 217569 : GCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGA : 217625 162 : s : 161 ! u 217626 : G : 217627 vulgar: NvOr5 6 161 . KQ414889.1 217171 217627 + 274 M 102 306 G 3 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217172 217627 274 + . gene_id 6 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217172 217627 . + . KQ414889.1 exonerate:protein2genome:local exon 217172 217627 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 217172 217627 274 + . alignment_id 6 ; Query NvOr5 ; Align 217172 7 306 ; Align 217478 112 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 270 Query range: 7 -> 153 Target range: 278576 -> 279017 8 : TyrAlaValGlnLeuAsnArgLeuPheLeuThrProIleGlyValTrpProIleGlyA : 27 |||::!||||||:!!||||||! !||||||! !||||||||||||||||||:!!.!!! TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 28 : rgAspAlaProLeuValGlnArgLeuLeuLysArgLeuAlaIleIleGlyCysTyrLe : 46 ! !!.! !! !:!!:!!!:!:!! !... !:!! ! :!! ! !!! !!! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 47 : uLeuMetSerTyrLeuLeuValProThrAlaLeuHisThrPheLeuGluGluPro<-> : 65 !|||!!:.!!!:!|||||||||||| !|||||| !||| ! |||!!::!! !! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 66 : AspProAlaIleLysLeuLysLeuIleGlyProMetSerPheHisLeuMetAlaIleG : 84 |||! !! !! |||:!!|||:!!|||||||||:!:|||||| ! !||||||! AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 85 : lyLysTyrValSerLeuValGlyArgThrGluGluIleSerAlaCysPheGluHisVa : 103 !|||||| !! !|||:!!..!||| !! :!!|||.!! !||| ! .!. !!:! leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 104 : lGluGluAspTrpLysMetTyrSerAspLysAsnAlaLysProGluLeuGluMetMet : 122 !... !||||||...:!: !... ! ... ::: ||| |||:::||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 123 : LysArgAsnAlaLysIleGlyArgPheLeuIleTyrLeuCysAlaAlaPheMetTyrG : 142 !:! !!:!|||!:!|||||||||! !||| !!!! !!|||!.!|||||||||. ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 143 : lyGlyGlyPhePheTyrHisMetIleMetProLeu : 153 .!|||||| !!|||||| ! :!:||||||||| erGlyGlyValPheTyrThrAlaValMetProLeu 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTG : 279017 vulgar: NvOr5 7 153 . KQ414889.1 278576 279017 + 270 M 57 171 G 0 3 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 279017 270 + . gene_id 7 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278577 279017 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279017 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278577 279017 270 + . alignment_id 7 ; Query NvOr5 ; Align 278577 8 171 ; Align 278751 65 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 244 Query range: 5 -> 150 Target range: 274377 -> 274803 6 : SerHisTyrAlaValGlnLeuAsnArgLeuPheLeuThrProIleGlyValTrpProI : 25 ||| !!|||::!:!!||||||||||||! !||||||! !|||||||||!.!||||||: SerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProL 274378 : AGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGT : 274435 26 : leGlyArgAspAlaProLeuValGlnArgLeuLeuLysArgLeuAlaIleIleGlyCy : 44 !!!.! ! !.!! !! ! !!:!!|||:!!|||..!!.!||| |||... || euAlaSerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCy 274436 : TAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttg : 274492 45 : sTyrLeuLeuMetSerTyrLeuLeuValProThrAlaLeuHisThrPheLeuGluGlu : 63 ||||! !!!!!!: !! ! !:!!:!!|||!:! !!!!|||! !.!.|||! !!!: sTyrCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAsp 274493 : ctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGAT : 274549 64 : ProAspProAlaIleLysLeuLysLeuIleGlyProMetSerPheHisLeuMetAlaI : 83 !..!! ! !:!:||||||||||||:!!||||||:!:.!! ! !!!!!:!.! GluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyG 274550 : GAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAG : 274609 84 : leGlyLysTyrValSerLeuValGlyArgThrGluGluIleSerAlaCysPheGluHi : 102 ! !!!.|||..!!!!|||:!! !|||!:!:!!|||||| !!!.!||| ! ||||| lyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHi 274610 : GAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCA : 274666 103 : sValGluGluAspTrpLysMetTyrSerAspLysAsnAlaLysProGluLeuGluMet : 121 |:!!:!! !||||||!:!!!: !!! ! ! !!!:! !:!!:!! sMetGlnThrAspTrpArgIleValThr---------ArgProGluAspGlnGlnVal 274667 : CATGCAAACAGATTGGAGGATCGTGACC---------AGACCGGAGGATCAACAAGTG : 274714 122 : MetLysArgAsnAlaLysIleGlyArgPheLeuIleTyrLeuCysAlaAlaPheMetT : 141 ||| !!:!||||||||||||||||||!:!:!! !!!!||||||||||||||| MetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetG 274715 : ATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGC : 274774 142 : yrGlyGlyGlyPhePheTyrHisMetIle : 150 ! !!|||! !.!!! !||| !:!!||| lnCysGlyValLeuCysTyrCysValIle 274775 : AATGCGGTGTTCTCTGTTATTGCGTGATA : 274803 vulgar: NvOr5 5 150 . KQ414889.1 274377 274803 + 244 M 106 318 G 3 0 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274378 274803 244 + . gene_id 8 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274378 274803 . + . KQ414889.1 exonerate:protein2genome:local exon 274378 274803 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 274378 274803 244 + . alignment_id 8 ; Query NvOr5 ; Align 274378 6 318 ; Align 274696 115 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 242 Query range: 273 -> 367 Target range: 279867 -> 280229 274 : AspLysPheAlaGluIleValGlnArgHisLeuArgAlaLeuAsnPheAlaSerArgV : 293 :::||| |||||| ! ! !!:! ! !! ! !!!!!:!||| !|||!:!: GluLysAlaAlaGlu***GlnTrpLysIleArgThrIlePheSerPheIleSerGlnI 279868 : gaGAAAGCAGCTGAGTAACAGTGGAAAATACGAACGATTTTCAGTTTTATATCGCAAA : 279925 294 : alGluLysAsnLeuAsnAlaIleCysPheValGluPheIleGlyCysThrLeuAsnIl : 312 !!||| ! !||||||! !||||||||||||||| ! |||||||||||||||||||| leGluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsnIl 279926 : TCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACAT : 279982 313 : eCysPheLeuGluTyrTyrPheIleThr >>>> Target Intron 1 >>>> G : 322 |||||||||| !||||||!!.:!!||| 80 bp | eCysPheLeuThrTyrTyrLeuLeuThr++ ++G 279983 : ATGCTTTTTGACATATTATTTACTCACGgt.........................agG : 280092 323 : luTrpGluAsnGlnAsnThrValSerThrMetThrTyrCysIleLeuLeuIleSerPh : 341 ||||||||.!..!.:!!.!!:!!.!!|||.!.||||||! !!:!!!|||||||||!! luTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerLe 280093 : AATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTTT : 280149 342 : eIlePheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuThrGluGlnSerLys : 360 .! ||||||:!!||||||.!!|||||||||||||||:!!|||:!!|||||| uThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGlnValPhe 280150 : AACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggtattt : 280206 361 : LysIleGlyGluValThrTyr : 367 |||........!! !||| PheIleSerSerThrIleTyr 280207 : ttcatttcttcaacGATCTAT : 280229 vulgar: NvOr5 273 367 . KQ414889.1 279867 280229 + 242 M 48 144 5 0 2 I 0 76 3 0 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 279868 280229 242 + . gene_id 9 ; sequence NvOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 279868 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279868 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280229 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280229 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 279868 280229 242 + . alignment_id 9 ; Query NvOr5 ; Align 279868 274 144 ; Align 280092 322 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 232 Query range: 5 -> 154 Target range: 256646 -> 257084 6 : SerHisTyrAlaValGlnLeuAsnArgLeuPheLeuThrProIleGlyValTrpProI : 25 ||| !!|||::!:!!||||||||||||! !||||||! !|||||||||!.!|||||| SerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProP 256647 : AGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCAC : 256704 26 : leGlyArgAspAlaProLeuValGlnArgLeuLeuLysArgLeuAlaIleIleGlyCy : 44 !..! !..!.!! !! !:!!:!!||| !:!!..!! !:!! !! !|||! !|| roSerSerSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCy 256705 : CCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTG : 256761 45 : sTyrLeuLeuMetSerTyrLeuLeuValProThrAlaLeuHisThrPheLeuGluGlu : 63 |||| !! !!!:! !!:! !|||:!!||| ! !||||||..!||||||!!:!!: sTyrGlySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAsp 256762 : CTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGAC : 256818 64 : ProAspProAlaIleLysLeuLysLeuIleGlyProMetSerPheHisLeuMetAlaI : 83 !..! ! :::|||:::||| ...|||||||||||| ! :!!!!:::! AspSerPheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerC 256819 : GACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCT : 256878 84 : leGlyLysTyrValSerLeuValGlyArgThrGluGluIleSerAlaCysPheGluHi : 102 !!.!!!.|||..!! !|||:!! !!:! !:!!!!:||| !! !||| !!||||| ysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHi 256879 : GTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCA : 256935 103 : sValGluGluAspTrpLysMetTyrSerAspLysAsnAlaLysProGluLeuGluMet : 121 |:!!||| !||||||!:!||| !.. !:!! !!!:! !:!!:!! sIleGluThrAspTrpArgMetVal---------ArgArgGluLysAspGlnGlnVal 256936 : TATAGAAACGGATTGGAGAATGGTG---------AGGAGGGAGAAGGATCAACAAGTG : 256983 122 : MetLysArgAsnAlaLysIleGlyArgPheLeuIleTyrLeuCysAlaAlaPheMetT : 141 |||! !!:!||||||!:!.!!||||||!:!:!! ! !!!|||||||||.!!||| MetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetG 256984 : ATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGC : 257043 142 : yrGlyGlyGlyPhePheTyrHisMetIleMetProLeuSer : 154 ! .!!||| ||| ::: ::! ! !!|||!:! lnSerGlyValPheCysPhePheValSerSerAlaLeuAsn 257044 : AAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAAC : 257084 vulgar: NvOr5 5 154 . KQ414889.1 256646 257084 + 232 M 105 315 G 3 0 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256647 257084 232 + . gene_id 10 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256647 257084 . + . KQ414889.1 exonerate:protein2genome:local exon 256647 257084 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 256647 257084 232 + . alignment_id 10 ; Query NvOr5 ; Align 256647 6 315 ; Align 256962 114 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 230 Query range: 1 -> 150 Target range: 266619 -> 267057 2 : LeuGlyGluLysSerHisTyrAlaValGlnLeuAsnArgLeuPheLeuThrProIleG : 21 |||..!... !||| !!|||::!:!!||||||||||||! !||||||! !||||||| LeuAsnSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleG 266620 : CTAAACAGTCTGAGCGATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAG : 266677 22 : lyValTrpProIleGlyArgAspAlaProLeuValGlnArgLeuLeuLysArgLeuAl : 40 ||!.!|||||| ! ! !.!! !! !:!!:!!|||:!!:!!... ! ! lyAlaTrpProProLeuSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLe 266678 : GCGCTTGGCCGCCGTTGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTT : 266734 41 : aIleIleGlyCysTyrLeuLeuMetSerTyrLeuLeuValProThrAlaLeuHisThr : 59 !|||:!! !||||||! !! !!!: !!:! !:!!:!!||| ! !!!!||| ! uIleValIleCysTyrCysSerIleLeuPheThrValIleProCysLeuPheHisLeu 266735 : GATCGTCATCTGCTACTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTC : 266791 60 : PheLeuGluGluProAspProAlaIleLysLeuLysLeuIleGlyProMetSerPheH : 79 !!||||||!!: !..! ! !! |||:!!|||:!!.!!||||||:!!||| ! ValLeuGluAspGluSerIleArgThrLysValLysValPheGlyProLeuSerHisT 266792 : GTTCTGGAGGACGAGAGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATT : 266851 80 : isLeuMetAlaIleGlyLysTyrValSerLeuValGlyArgThrGluGluIleSerAl : 98 !!!:!:!.! ! !!!.|||..!!!!|||:!! !|||!:!:!!|||||| !!!. rpPheValGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGl 266852 : GGTTCGTCGGAGGAATTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGG : 266908 99 : aCysPheGluHisValGluGluAspTrpLysMetTyrSerAspLysAsnAlaLysPro : 117 !||| ! ||||||:!!:!! !||||||!:!!!: !!! !.!.! !||| yCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAspLys--- 266909 : TTGCGTAGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAG--- : 266965 118 : GluLeuGluMetMetLysArgAsnAlaLysIleGlyArgPheLeuIleTyrLeuCysA : 137 :!!:!!||| !!:!||||||!:!|||||||||!:!:!! ! !!!|||| ------GlnValMetLeuLysAsnAlaArgIleGlyArgTyrIleAlaIlePheCysA 266966 : ------CAGGTGATGTTGAAGAACGCGAGGATCGGTCGTTACATTGCTATATTCTGCG : 267016 138 : laAlaPheMetTyrGlyGlyGlyPhePheTyrHisMetIle : 150 ||||||||||| ! !!|||! !.!! !||| !:!!||| laAlaPheMetGlnCysGlyValLeuGlyTyrCysValIle 267017 : CGGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGTGATA : 267057 vulgar: NvOr5 1 150 . KQ414889.1 266619 267057 + 230 M 115 345 G 3 0 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266620 267057 230 + . gene_id 11 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266620 267057 . + . KQ414889.1 exonerate:protein2genome:local exon 266620 267057 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 266620 267057 230 + . alignment_id 11 ; Query NvOr5 ; Align 266620 2 345 ; Align 266965 120 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 228 Query range: 5 -> 154 Target range: 259766 -> 260204 6 : SerHisTyrAlaValGlnLeuAsnArgLeuPheLeuThrProIleGlyValTrpProI : 25 ||| !!|||::!:!!|||!!!||||||! !||||||! !|||||||||!.!|||||| SerAspTyrSerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProP 259767 : AGTGACTATAGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCAC : 259824 26 : leGlyArgAspAlaProLeuValGlnArgLeuLeuLysArgLeuAlaIleIleGlyCy : 44 !..! !..!.!! !! !:!!:!!!:!:!!:!!... !:!! !|||.!! !|| roSerSerSerThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCy 259825 : CTTCATCCTCCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTG : 259881 45 : sTyrLeuLeuMetSerTyrLeuLeuValProThrAlaLeuHisThrPheLeuGluGlu : 63 |||| ! !!!: ! ! !|||:!!||| !!.!||||||! !.!.||||||:!! sTyrSerThrIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLys 259882 : CTACAGTACCATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAG : 259938 64 : ProAspProAlaIleLysLeuLysLeuIleGlyProMetSerPheHisLeuMetAlaI : 83 !..! ! !!!:||| !|||:!!:!!||||||:!:!!! ! !!!:!:!.! GluSerLeuTyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyC 259939 : GAGAGTTTGTACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCT : 259998 84 : leGlyLysTyrValSerLeuValGlyArgThrGluGluIleSerAlaCysPheGluHi : 102 ! !!!.|||..!!!!|||:!! !||| !..!!!:||| !::!||| ! ||||| ysIleAsnTyrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHi 259999 : GTATTAATTACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACA : 260055 103 : sValGluGluAspTrpLysMetTyrSerAspLysAsnAlaLysProGluLeuGluMet : 121 |||||||.!.||||||!:!!!: !!! !:!! !!!:! !.!.:!! sValGluAsnAspTrpArgIleIleThr---------ArgGluLysAspGlnAsnVal 260056 : CGTGGAGAACGATTGGAGAATTATAACG---------AGGGAGAAGGATCAGAACGTG : 260103 122 : MetLysArgAsnAlaLysIleGlyArgPheLeuIleTyrLeuCysAlaAlaPheMetT : 141 ||| !||| !!||||||.!!||||||!:!:!! ! !! !||||||||||||:!! MetLeuArgTyrAlaLysPheGlyArgTyrValAlaAlaSerCysAlaAlaPheValG 260104 : ATGTTGAGATACGCGAAATTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTGC : 260163 142 : yrGlyGlyGlyPhePheTyrHisMetIleMetProLeuSer : 154 ! ||||||! !.!.! !!:! !:!!:!!! ! !|||||| lnGlyGlyValLeuCysPheCysLeuValThrValLeuSer 260164 : AGGGCGGAGTTCTGTGCTTCTGTTTGGTCACGGTGTTGAGT : 260204 vulgar: NvOr5 5 154 . KQ414889.1 259766 260204 + 228 M 106 318 G 3 0 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259767 260204 228 + . gene_id 12 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259767 260204 . + . KQ414889.1 exonerate:protein2genome:local exon 259767 260204 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 259767 260204 228 + . alignment_id 12 ; Query NvOr5 ; Align 259767 6 318 ; Align 260085 115 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 221 Query range: 3 -> 161 Target range: 226918 -> 227383 4 : GluLysSerHisTyrAlaValGlnLeuAsnArgLeuPheLeuThrProIleGlyValT : 23 ||| ! ! !:!! ::!:!!||||||||||||! !.!.|||! !|||:!!|||:!!| GluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleT 226919 : GAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCT : 226976 24 : rpProIleGlyArgAspAlaProLeuValGlnArgLeuLeuLysArgLeuAlaIleIl : 42 ||||| ..!||| ! ::! !!! !:!! !|||! !!!!... !!||| ! !.! rpProSerSerArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPh 226977 : GGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTT : 227033 43 : eGlyCysTyrLeuLeuMetSerTyrLeuLeuValProThrAlaLeuHisThrPheLeu : 61 ! !|||||| !|||||||||!:! !|||||| !!!:!!.!|||:!!..! !!||| eLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrValValLeu 227034 : CCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTA : 227090 62 : GluGluProAspProAlaIleLysLeuLysLeuIleGlyProMetSerPheHisLeuM : 81 |||! ! !! ! !! !! !! !||||||:!!|||||||||||||||||| ! !| GluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaM 227091 : GAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGA : 227150 82 : etAlaIleGlyLysTyrValSerLeuValGlyArgThrGluGluIleSerAlaCysPh : 100 ||:!!:!! !|||||| !! !|||..! !!.! !!!:!!:||| !! !||| ! etSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysVa 227151 : TGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGT : 227207 101 : eGluHisValGluGluAspTrpLysMetTyrSerAspLysAsnAlaLysProGluLeu : 119 !|||!..:!!:!! !||||||||| :!!! !.. ! ! !!!: ! lGluArgIleLysTrpAspTrpLys---------AsnIleArgTyrLeuGluAspArg 227208 : CGAACGGATCAAATGGGACTGGAAG---------AATATCAGATACCTGGAGGACAGA : 227255 120 : GluMetMetLysArgAsnAlaLysIleGlyArgPheLeuIleTyrLeuCysAlaAlaP : 139 .!.:!!||| !! ! !!||| ! !|||||| |||||| !:!!|||.!! !| AsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPheP 227256 : AACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTT : 227315 140 : heMetTyrGlyGlyGlyPhePheTyrHisMetIleMetProLeuSerValGlyArgLe : 158 ||:!:!:!...... |||::::::!!::!!:!:|||:!!!:!!.!|||!!!:! heValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGlySerVa 227316 : TCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGT : 227372 159 : uValThrLys : 161 !!.!|||:!! lAlaThrGlu 227373 : TGCAACGGAG : 227383 vulgar: NvOr5 3 161 . KQ414889.1 226918 227383 + 221 M 105 315 G 3 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226919 227383 221 + . gene_id 13 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226919 227383 . + . KQ414889.1 exonerate:protein2genome:local exon 226919 227383 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 226919 227383 221 + . alignment_id 13 ; Query NvOr5 ; Align 226919 4 315 ; Align 227234 112 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 219 Query range: 313 -> 424 Target range: 277347 -> 277833 314 : PheLeuGluTyrTyrPheIleThrGluTrpGluAsnGlnAsnThrValSerThrMetT : 333 |||! !:!!! ! |||.!! !||||||...:!!...:!!..! !!!!! !! | Phe***GlnCysLeuPhePhe***GluTrpSerAspSerAspValGlnThrMetThrT 277348 : TTTTAGCAATGTCTGTTTTTCTAGGAATGGTCTGACAGCGATGTTCAGACAATGACTA : 277405 334 : hrTyrCysIleLeuLeuIleSerPheIlePheAsnIlePheIlePheCysTyrIleGl : 352 ||:!!! !!!::!!|||||||||.!. |||||||||||| ! ! ||||||||||| hrHisPheMetIleLeuIleSerMetCysPheAsnIlePheThrValCysTyrIleGl 277406 : CGCATTTCATGATCCTTATATCCATgtgtttcaacatttttacAGTATGCTATATCGG : 277462 353 : yGluLeuLeuThrGluGln >>>> Target Intron 1 >>>> SerLysLysI : 362 ||||:!!|||||||||||| 72 bp !!!||||||: yGluIleLeuThrGluGln++ ++CysLysLysV 277463 : AGAAATACTAACTGAACAGgt.........................agTGTAAAAAAG : 277564 363 : leGlyGluValThrTyrAlaIleAsnTrpTyrThrLeuSerGlyLysArgAlaValAs : 381 !!|||||||||..!||| !! ||||||||| !||| !!! !||| ! !:!!:! alGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProAspLysAspIleLeuAs 277565 : TTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCGACAAAGATATTCTCAA : 277621 382 : pLeuIleMetIleIleMetIleAlaSerCysTyrProAlaArgIleThrAlaGlyLys : 400 !|||:!!:!:|||||| ! !:!!||| :::||||||||||||||| nLeuLeuLeuIleIleSerArgSerSerLeuVal---IleLysIleThrAlaGlyLys 277622 : TTTGCTTCTCATCATTTCAAGATCTAGCctggta---attaaaattaccgctggaaaa : 277675 401 : MetValAsnLeuSerLeuGlySerPheCysAsn >>>> Target Intron 2 >> : 412 ::::::...:::|||:!! !!!!||| !!:!! 84 bp LeuIleGlnMetSerValTyrThrPheGlyAsp++ 277676 : ttaattcaaatgtCCGTGTACACGTTCGGCGATgt....................... : 277713 413 : >> ValIleLysThrSerAlaThrTyrLeuAsnLeuLeuArg : 424 ||||||||||||!!! !...|||||||||:::|||||| ++ValIleLysThrThrPheAlaTyrLeuAsnIleLeuArg 277714 : ..agGTAATAAAAACCACTTTCgcgtatttaaatattctacgC : 277833 vulgar: NvOr5 313 424 . KQ414889.1 277347 277833 + 219 M 45 135 5 0 2 I 0 68 3 0 2 M 34 102 G 1 0 M 18 54 5 0 2 I 0 80 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277348 277833 219 + . gene_id 14 ; sequence NvOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277348 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277348 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277483 277484 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277483 277554 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277553 277554 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277555 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277555 277710 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277833 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277833 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277348 277833 219 + . alignment_id 14 ; Query NvOr5 ; Align 277348 314 135 ; Align 277555 359 102 ; Align 277657 394 54 ; Align 277795 412 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 215 Query range: 287 -> 358 Target range: 304936 -> 305211 288 : AsnPheAlaSerArgValGluLysAsnLeuAsnAlaIleCysPheValGluPheIleG : 307 !..|||:!!:!!! !|||:!!! ! |||.!.! !:!!||||||:!!|||||||||| ArgPheSerAlaIleValGlnThrValLeuGlnGluValCysPheLeuGluPheIleG 304937 : AGATTCTCGGCAATAGTGCAAACAGTGTTGCAAGAAGTATGCTTCTTGGAATTCATTG : 304994 308 : lyCysThrLeuAsnIleCysPheLeuGluTyrTyrPheIleThr >>>> Target : 322 ||! !|||||| ||||||.!.||||||||||||! !|||||| 62 lySerThrLeuLeuIleCysLeuLeuGluTyrTyrCysIleThr++ 304995 : GTTCTACCTTACTGATATGTCTACTTGAATACTACTGTATAACGgt............ : 305041 323 : Intron 1 >>>> GluTrpGluAsnGlnAsnThrValSerThrMetThrTyrCysI : 336 bp !!:||||||!:!...|||||||||||| !! |||||| : ++AspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrV 305042 : .............agGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAG : 305143 337 : leLeuLeuIleSerPheIlePheAsnIlePheIlePheCysTyrIleGlyGluLeuLe : 355 !:|||||||||||| ! ! !|||||||||||||||!!.|||||||||||||||:!!|| alLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLe 305144 : TGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCT : 305200 356 : uThrGluGln : 358 |! !|||:!! uMetGluLys 305201 : TATGGAAAAG : 305211 vulgar: NvOr5 287 358 . KQ414889.1 304936 305211 + 215 M 34 102 5 0 2 I 0 58 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304937 305211 215 + . gene_id 15 ; sequence NvOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 304937 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304937 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 0 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304937 305211 215 + . alignment_id 15 ; Query NvOr5 ; Align 304937 288 102 ; Align 305101 322 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 212 Query range: 1 -> 140 Target range: 262831 -> 263239 2 : LeuGlyGluLysSerHisTyrAlaValGlnLeuAsnArgLeuPheLeuThrProIleG : 21 !!!|||... ||| !!|||::!:!!|||:!!||||||! !.!.|||! !||||||| PheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleG 262832 : TTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCG : 262889 22 : lyValTrpProIleGlyArgAspAlaProLeuValGlnArgLeuLeuLysArgLeuAl : 40 ||!.!||||||:!:..! !... ! !! !:!!:!!|||:!!:!! ! !||| lyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLe 262890 : GTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTT : 262946 41 : aIleIleGlyCysTyrLeuLeuMetSerTyrLeuLeuValProThrAlaLeuHisThr : 59 !|||:!!! !||||||! !|||!!: !! ! !:!!:!!|||:!! !||||||! ! uIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeuHisIle 262947 : AATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATC : 263003 60 : PheLeuGluGluProAspProAlaIleLysLeuLysLeuIleGlyProMetSerPheH : 79 !!||||||! !:!! ! !!!:||||||:!!:!!:!!||||||:!:.!! ValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnT 263004 : GTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGT : 263063 80 : isLeuMetAlaIleGlyLysTyrValSerLeuValGlyArgThrGluGluIleSerAl : 98 !!!:!:!.!!!: !!!.|||..!!!!|||:!! !!.!!:!:!!!!:|||..!!. rpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGl 263064 : GGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGG : 263120 99 : aCysPheGluHisValGluGluAspTrpLysMetTyrSerAspLysAsnAlaLysPro : 117 !||| ! :!!||||||:!!||||||||| !!: !!! ! ! ! yCysValGlnHisValGlnGluAspTrpCysIleValThr---------ArgLeuGlu 263121 : TTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACC---------AGGTTGGAG : 263168 118 : GluLeuGluMetMetLysArgAsnAlaLysIleGlyArgPheLeuIleTyrLeuCysA : 137 !!:! !...!!:||| !!:!||||||||| !||||||!:!:!! ! !! !|||| AspGlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysA 263169 : GATCAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCG : 263228 138 : laAlaPheMet : 140 || !|||||| laIlePheMet 263229 : CGATCTTCATG : 263239 vulgar: NvOr5 1 140 . KQ414889.1 262831 263239 + 212 M 110 330 G 3 0 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262832 263239 212 + . gene_id 16 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262832 263239 . + . KQ414889.1 exonerate:protein2genome:local exon 262832 263239 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 262832 263239 212 + . alignment_id 16 ; Query NvOr5 ; Align 262832 2 330 ; Align 263162 115 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 206 Query range: 284 -> 360 Target range: 224128 -> 224440 285 : ArgAlaLeuAsnPheAlaSerArgValGluLysAsnLeuAsnAlaIleCysPheValG : 304 !:!..!! !!..||| !!!!!.!..!|||||| |||.!. !:!!! ||||||| LysCysCysArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValG 224129 : AAATGTTGCAGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGG : 224186 305 : luPheIleGlyCysThrLeuAsnIleCysPheLeuGluTyrTyrPheIleThr >>> : 322 |||||:!!||||||! !||||||||||||.!!|||! !|||||| !!|||..! luPheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleVal++ 224187 : AATTTCTAGGCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTGgt... : 224242 323 : > Target Intron 1 >>>> GluTrpGluAsnGlnAsnThrValSerThrMetT : 333 84 bp ||||||...:::...:!! !..!|||.!!:!!| ++GluTrpSerSerSerHisLeuThrSerAlaValT 224243 : ......................aggagtggagttcgagtcATTTAACTAGCGCGGTGA : 224357 334 : hrTyrCysIleLeuLeuIleSerPheIlePheAsnIlePheIlePheCysTyrIleGl : 352 |||||! !|||||||||!!:|||... ||||||||||||||||||||||||||||| hrTyrPheIleLeuLeuMetSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 224358 : CTTACTTCATACTACTCATGTCtcttactttcaatatttttatattttgttacatAGG : 224414 353 : yGluLeuLeuThrGluGlnSerLys : 360 |||||||:!!.!!|||||| ||| yGluLeuValAlaGluGlnValLys 224415 : AGAGCTGGTAGCTGAAcaggtgaaa : 224440 vulgar: NvOr5 284 360 . KQ414889.1 224128 224440 + 206 M 37 111 5 0 2 I 0 80 3 0 2 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224129 224440 206 + . gene_id 17 ; sequence NvOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224129 224239 . + . KQ414889.1 exonerate:protein2genome:local exon 224129 224239 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224240 224241 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224240 224323 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224322 224323 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 224324 224440 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224440 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224129 224440 206 + . alignment_id 17 ; Query NvOr5 ; Align 224129 285 111 ; Align 224324 322 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 316 -> 412 Target range: 258249 -> 258624 317 : TyrTyrPheIleThrGluTrpGluAsnGlnAsnThrValSerThrMetThrTyrCysI : 336 :::|||:::... ||||||...!..|||::: ::: :::|||! !! PheTyrTyrPheGlnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheM 258250 : ttttattattttcaggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTA : 258307 337 : leLeuLeuIleSerPheIlePheAsnIlePheIlePheCysTyrIleGlyGluLeuLe : 355 !::!!|||||||||... ||||||||||||:::...|||||||||||||||:!!|| etIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLe 258308 : TGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATT : 258364 356 : uThrGluGln >>>> Target Intron 1 >>>> SerLysLysIleGlyGluV : 365 |||||||||| 90 bp !!!||||||:!!|||!!:| uThrGluGln++ ++CysLysLysValGlyAspV 258365 : AACAGAACAGgt.........................agTGCAAGAAAGTTGGCGACG : 258484 366 : alThrTyrAlaIleAsnTrpTyrThrLeuSerGlyLysArgAlaValAspLeuIleMe : 384 ||..!||| !! !:!!|||||| !||| !!! !|||||| !:!!|||||||||:! alValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuIleLe 258485 : TGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAATTTT : 258541 385 : tIleIleMetIleAlaSerCysTyrProAlaArgIleThrAlaGlyLysMetValAsn : 403 !:!!||| !:!!||| ! !.!!:!|||||||||||||||... ::: uValIleAlaArgSerSerValVal---ValGlnIleThrAlaGlyLysPhePheHis 258542 : GGTAATCGCACGATCGAGCGTGGTC---GTTCAAATCACCGCGggaaaattctttcac : 258595 404 : LeuSerLeuGlySerPheCysAsnVal : 412 ::!|||:!! !!!!||| !!:!!||| MetSerIleTyrThrPheSerAspVal 258596 : atGTCCATTTACACATTCAGCGATGTG : 258624 vulgar: NvOr5 316 412 . KQ414889.1 258249 258624 + 205 M 42 126 5 0 2 I 0 86 3 0 2 M 34 102 G 1 0 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258250 258624 205 + . gene_id 18 ; sequence NvOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 258250 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258250 258375 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258624 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258624 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 258250 258624 205 + . alignment_id 18 ; Query NvOr5 ; Align 258250 317 126 ; Align 258466 359 102 ; Align 258568 394 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 284 -> 426 Target range: 219141 -> 219800 285 : ArgAlaLeuAsnPheAlaSerArgValGluLysAsnLeuAsnAlaIleCysPheValG : 304 ||| ......||| :!!! !..!|||!:!!.!|||.!. !|||! !|||!.!| ArgTyrPheArgPheLeuThrLeuThrGluArgThrLeuGlnGlnIleSerPheAlaG 219142 : CggtatttcagatttttgaCGCTCACAGAGAGAACCCTCCAGCAAATCTCTTTCGCTG : 219199 305 : luPheIleGlyCysThrLeuAsnIleCysPheLeuGluTyrTyrPheIleThr >>> : 322 |||||:!!|||||||||:!!:!!||||||.!!:!!! !||||||.!!|||..! luPheLeuGlyCysThrMetAspIleCysLeuValGlyTyrTyrIleIleVal++ 219200 : AATTTCTAGGATGCACCATGGACATATGTCTCGTTGGATATTACATTATCGTGgt... : 219255 323 : > Target Intron 1 >>>> GluTrpGluAsnGlnAsnThrValSerThrMetT : 333 76 bp ||||||:!!:::.!.:!!..!..!|||.!!:!!| ++GluTrpLysSerAsnAspValThrSerAlaValT 219256 : ......................agGAATGGAAATCGAATGATGTAACGAGTGCAGTGA : 219362 334 : hrTyrCysIleLeuLeuIleSerPheIlePheAsnIlePheIlePheCysTyrIleGl : 352 ||||| !|||||||||||||||.!. ||||||||||||||||||||||||||||| hrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 219363 : CATACATCATTCTACTTATATCCCTcactttcaacattttcatattttgctaCATAGG : 219419 353 : yGluLeuLeuThrGluGlnSerLysLysIleGlyGluValThrTyrAlaIleAsnTrp : 371 ||||:!!:!!.!!|||||| ::: ... ::::::... |||... yGluIleValAlaGluGlnValGluThrPhePheLysIleAlaLysIleIleGlu*** 219420 : AGAGATCGTTGCTGAACAggtagaaacatttttcaaaattgcaaaaattatcgaataa : 219476 372 : TyrThrLeuSerGlyLysArgAlaValAspLeu{Il} >>>> Target Intron : 383 ...::: ...|||::: ::: :!!{:!} 157 bp LysValValIleAlaLysLys***IleLeuIle{Va}++ 219477 : aaagttgtaattgcaaaaaaatgaattctgaTA{GT}gt................... : 219516 384 : 2 >>>> {e}MetIleIleMetIleAlaSerCysTyrProAlaArgIleThrAlaGl : 399 {:}! ||| :::... ||| !:!|||:!!! ! !.! ! ! --{l}SerIleLysLeuPheLysSerThrPheProSerLeuAlaAsn***Ar 219517 : ......gt{G}AGtatcaaattattcaaatctaCATTTCCATCTCTGGCGAATTAACG : 219717 400 : yLysMetValAsnLeuSerLeuGlySerPheCysAsnValIleLysThrSerAlaThr : 418 !::: :::... ... ! .!.|||:!!||||||:!!!.!||| gGlnAsnSerSerPhePhePheProArgArgGluGlnValValLysThrAlaValThr 219718 : ACaaaattcctctttcttttttcctcgtcgTGAACAGGTCGTTAAGACTGCAGTCACG : 219774 419 : TyrLeuAsnLeuLeuArgThrMet : 426 !:!||||||:!!|||||||||:!! PheLeuAsnValLeuArgThrLeu 219775 : TTTCTGAATGTACTACGAACATTG : 219800 vulgar: NvOr5 284 426 . KQ414889.1 219141 219800 + 204 M 37 111 5 0 2 I 0 72 3 0 2 M 61 183 S 0 2 5 0 2 I 0 153 3 0 2 S 1 1 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219142 219800 204 + . gene_id 19 ; sequence NvOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 219142 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219142 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219513 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219513 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219514 219515 . + . intron_id 2 ; splice_site "Gt" KQ414889.1 exonerate:protein2genome:local intron 219514 219670 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219669 219670 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local cds 219671 219800 . + . KQ414889.1 exonerate:protein2genome:local exon 219671 219800 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219142 219800 204 + . alignment_id 19 ; Query NvOr5 ; Align 219142 285 111 ; Align 219329 322 183 ; Align 219672 384 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 202 Query range: 283 -> 357 Target range: 228061 -> 228355 284 : LeuArgAlaLeuAsnPheAlaSerArgValGluLysAsnLeuAsnAlaIleCysPheV : 303 ||| ! !!!!!:!||| !:!!! !:!!||||||!.!:!!.!. !|||..!|||| LeuSerArgPheSerPheLeuAlaLeuIleGluLysThrMetGlnGlnIleAlaPheV 228062 : CTGTCACGTTTCAGCTTTCTGGCCCTCATAGAGAAAACCATGCAGCAAATAGCTTTCG : 228119 304 : alGluPheIleGlyCysThrLeuAsnIleCysPheLeuGluTyrTyrPheIleThr : 322 ||||||||:!!|||||||||:!!! !:!:|||.!!:!!|||||||||.!!|||||| alGluPheLeuGlyCysThrIleIleLeuCysLeuIleGluTyrTyrIleIleThr++ 228120 : TAGAATTTTTAGGGTGTACAATAATTCTGTGCCTCATCGAGTATTACATCATAACGgt : 228176 323 : >>>> Target Intron 1 >>>> GluTrpGluAsnGlnAsnThrValSerThrM : 332 72 bp ||||||.!. :!!.!. !..!! !.!!: ++GluTrpAsnProLysGluLeuThrPheAlaV 228177 : .........................agGAATGGAATCCGAAAGAGTTAACATTTGCTG : 228278 333 : etThrTyrCysIleLeuLeuIleSerPheIlePheAsnIlePheIlePheCysTyrIl : 351 !:||||||! ||||||:!!||||||! |||||||||||||||||||||||||| alThrTyrSerAlaLeuLeuLeuSerPheThrPheAsnIlePheIlePheCysTyrIl 228279 : TAACTTACTCAGCGTTACTTTTATCCTTTAccttcaatattttcatattttgttaTAT : 228335 352 : eGlyGluLeuLeuThrGlu : 357 |||||||:!!:!!.!!||| eGlyGluIleValAlaGlu 228336 : AGGAGAAATTGTTGCCGAA : 228355 vulgar: NvOr5 283 357 . KQ414889.1 228061 228355 + 202 M 38 114 5 0 2 I 0 68 3 0 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 228062 228355 202 + . gene_id 20 ; sequence NvOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 228062 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228062 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228355 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228355 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 228062 228355 202 + . alignment_id 20 ; Query NvOr5 ; Align 228062 284 114 ; Align 228248 322 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 200 Query range: 285 -> 358 Target range: 210489 -> 210774 286 : AlaLeuAsnPheAlaSerArgValGluLysAsnLeuAsnAlaIleCysPheValGluP : 305 ..!!!!!:!||| !:!!! !..!|||!!. !|||:!!! !|||! !!.:!!|||. CysPheSerPheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGluM 210490 : TGTTTCAGTTTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAA : 210547 306 : heIleGlyCysThrLeuAsnIleCysPheLeuGluTyrTyrPheIleThr >>>> T : 322 !.:!:|||||||||||||||!!:|||||||||! |||||| !!:! ! etValGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210548 : TGGTGGGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt...... : 210600 323 : arget Intron 1 >>>> GluTrpGluAsnGlnAsnThrValSerThrMetThrT : 334 66 bp ||||||!!:::!:!!:!! !!:!!|||!:!:!!|||| ++GluTrpAspSerLysAspProIleSerSerLeuThrT 210601 : ...................agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGT : 210700 335 : yrCysIleLeuLeuIleSerPheIlePheAsnIlePheIlePheCysTyrIleGlyGl : 353 || :!!||||||! !||| !!! |||||||||||||||||||||||||||||||| yrIleValLeuLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGl 210701 : ACATAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGA : 210757 354 : uLeuLeuThrGluGln : 358 |:!!|||.!!|||||| uValLeuAlaGluGln 210758 : AGTGTTGGCTGAACAg : 210774 vulgar: NvOr5 285 358 . KQ414889.1 210489 210774 + 200 M 36 108 5 0 2 I 0 62 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210490 210774 200 + . gene_id 21 ; sequence NvOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 210490 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210490 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210490 210774 200 + . alignment_id 21 ; Query NvOr5 ; Align 210490 286 108 ; Align 210664 322 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 199 Query range: 7 -> 159 Target range: 208212 -> 208659 8 : TyrAlaValGlnLeuAsnArgLeuPheLeuThrProIleGlyValTrpProIleGlyA : 27 !:! !|||!::|||||| !! ! |||! ! !|||||| !||||||! !..!! PheAsnValArgLeuAsnValTrpThrLeuLysIleIleGlySerTrpProArgSerI 208213 : TTCAACGTTCGTCTGAACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTA : 208270 28 : rgAspAlaProLeuValGlnArgLeuLeuLysArgLeuAlaIleIleGlyCysTyrLe : 46 !||| ! !!! !:!!:!!!.! !! ! ! ! !||| !! !:!! ! !!:!!! leAspArgSerTrpLeuGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCy 208271 : TAGATCGTTCCTGGTTAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTG : 208327 47 : uLeuMetSerTyrLeuLeuValProThrAlaLeuHisThrPheLeuGluGluProAsp : 65 !|||:!:.!!!:!:!!:!!:!!||||||!.!:!! !.!!.!!|||! !! !||| sLeuLeuGlyPheIleValIleProThrGlyMetPheAlaIleLeuValValGluAsp 208328 : TTTGCTCGGTTTCATCGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGAT : 208384 66 : ProAlaIleLysLeuLysLeuIleGlyProMetSerPheHisLeuMetAlaIleGlyL : 85 ! ! !:!!||||||:!! !.!! !!:!!|||||| !:!!||||||.!! !| PheTyrAspGlnLeuLysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrL 208385 : TTTTACGACCAATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGA : 208444 86 : ysTyrValSerLeuValGlyArgThrGluGluIleSerAlaCysPheGluHisValGl : 104 ||||||||! !:!!..!! !||| !! !!:||| !! !||| !!|||:!!||||| ysTyrValIleMetThrValArgGluGlyAspIleArgLysCysValGluTyrValGl 208445 : AGTACGTGATCATGACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGA : 208501 105 : uGluAspTrpLysMetTyrSerAspLysAsnAlaLysProGluLeuGluMetMetLys : 123 |! ||||||!:! :!! !.!. !:!! !!!: !:!!!!:||| ! uAlaAspTrpArg---------AsnValGluHisGluGluAspArgLysIleMetLeu 208502 : GGCTGATTGGAGA---------AACGTGGAGCACGAGGAGGACAGGAAGATCATGTTG : 208549 124 : ArgAsnAlaLysIleGlyArgPheLeuIleTyrLeuCysAlaAlaPheMetTyrGlyG : 143 !||||||!...!!!.!||| |||||| :!!|||!.!|||||||||||||||| AspAsnAlaSerPheAlaArgLysLeuIleValIleCysGlyAlaPheMetTyrGlyG 208550 : GACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCGGAGCTTTCATGTACGGAG : 208609 144 : lyGlyPhePheTyrHisMetIleMetProLeuSerValGlyArgLeuVal : 159 || ...||||||::::!: !:!!||||||!!! !! !!:!:!!||| lyValIlePheTyrTyrIleAlaLeuProLeuThrArgAspLysValVal 208610 : GtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGACAAGGTCGTC : 208659 vulgar: NvOr5 7 159 . KQ414889.1 208212 208659 + 199 M 101 303 G 3 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208213 208659 199 + . gene_id 22 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208213 208659 . + . KQ414889.1 exonerate:protein2genome:local exon 208213 208659 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 208213 208659 199 + . alignment_id 22 ; Query NvOr5 ; Align 208213 8 303 ; Align 208516 112 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 196 Query range: 3 -> 160 Target range: 204224 -> 204683 4 : GluLysSerHisTyrAlaValGlnLeuAsnArgLeuPheLeuThrProIleGlyValT : 23 ||| ! !...||||||..!!::!!! !:!! !.!!||| ! !:!!|||!.!| GluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaT 204225 : GAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGT : 204282 24 : rpProIleGlyArgAspAlaProLeuValGlnArgLeuLeuLysArgLeuAlaIleIl : 42 |||||||| ! !:!!:!! !!! ! !! !||||||:!!::!|||:!!! ! !:! rpProIleProValAsnSerSerProPheThrArgLeuValArgArgIleGluHisVa 204283 : GGCCGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGT : 204339 43 : eGlyCysTyrLeuLeuMetSerTyrLeuLeuValProThrAlaLeuHisThrPheLeu : 61 !! ! !|||...|||... :!!:!!|||||| ! !|||:!!..!|||||| lValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheLeu 204340 : AGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTG : 204396 62 : GluGluProAspProAlaIleLysLeuLysLeuIleGlyProMetSerPheHisLeuM : 81 :!!||| !:!! ! !|||:::||||||:!!:!!||||||!!: ! ! ! !! LysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSerI 204397 : AAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCA : 204456 82 : etAlaIleGlyLysTyrValSerLeuValGlyArgThrGluGluIleSerAlaCysPh : 100 !: !.!! !|||||| ! !:!!:!! !|||! !!!::!!|||..! ! !!!! leGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSerLe 204457 : TACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGTTT : 204513 101 : eGluHisValGluGluAspTrpLysMetTyrSerAspLysAsnAlaLysProGluLeu : 119 ..!. !:!!..!...||||||! ! ! !!!!|||:!!||| ! ! uAsnThrIleArgArgAspTrpIleGluAlaThrAspGluAsnArgLeu--------- 204514 : GAACACCATCAGACGCGACTGGATAGAGGCTACGGATGAAAATCGGTTG--------- : 204564 120 : GluMetMetLysArgAsnAlaLysIleGlyArgPheLeuIleTyrLeuCysAlaAlaP : 139 !!:.!.::: !!!.||||||||||||||| :!!:!: :!!...|||||| ---IlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaT 204565 : ---ATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCA : 204618 140 : heMetTyrGlyGlyGlyPhePheTyrHisMetIleMetProLeuSerValGlyArgLe : 158 !|||||||||||||||!!.! !|||...! !|||:!:||||||! ! !|||! !:! hrMetTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIl 204619 : CTATGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGAT : 204675 159 : uValThr : 160 !|||||| eValThr 204676 : CGTAACA : 204683 vulgar: NvOr5 3 160 . KQ414889.1 204224 204683 + 196 M 113 339 G 4 0 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204225 204683 196 + . gene_id 23 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204225 204683 . + . KQ414889.1 exonerate:protein2genome:local exon 204225 204683 . + . insertions 0 ; deletions 4 KQ414889.1 exonerate:protein2genome:local similarity 204225 204683 196 + . alignment_id 23 ; Query NvOr5 ; Align 204225 4 339 ; Align 204564 121 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 196 Query range: 6 -> 143 Target range: 232456 -> 232858 7 : HisTyrAlaValGlnLeuAsnArgLeuPheLeuThrProIleGlyValTrpProIleG : 26 .!.|||::!:!!|||:!!||||||! !||||||||||||!!:|||!.!|||||| !! GluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgV 232457 : GAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTG : 232514 27 : lyArgAspAlaProLeuValGlnArgLeuLeuLysArgLeuAlaIleIleGlyCysTy : 45 !! !!!:.!! !! !!.!|||!:!|||||| !!:!||| !! !:!! !|||:! alThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHi 232515 : TTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCA : 232571 46 : rLeuLeuMetSerTyrLeuLeuValProThrAlaLeuHisThrPheLeuGluGluPro : 64 !! !||||||! !! !! !:!!|||||| ! !||| !! !.!.!!!|||!!: !! sSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThr 232572 : TTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACG : 232628 65 : AspProAlaIleLysLeuLysLeuIleGlyProMetSerPheHisLeuMetAlaIleG : 84 ..!! !! ! !!:!:!!|||! !||||||||||||||| ! !||||||!.! ! SerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluL 232629 : AGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAAT : 232688 85 : lyLysTyrValSerLeuValGlyArgThrGluGluIleSerAlaCysPheGluHisVa : 103 !!!.||| !!!!|||:!!!.!!:!.!!.!.!!:||| ! !||| ! |||!!.|| euAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnVa 232689 : TGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGT : 232745 104 : lGluGluAspTrpLysMetTyrSerAspLysAsnAlaLysProGluLeuGluMetMet : 122 |:!!:!!||||||::! :!! !!. ! !.!.! !!!::!!||| lLysGlnAspTrpArg---------AsnValLysLysProValHisArgAspLeuMet 232746 : GAAACAGGACTGGCGA---------AACGTTAAGAAACCCGTCCATCGTGATCTGATG : 232793 123 : LysArgAsnAlaLysIleGlyArgPheLeuIleTyrLeuCysAlaAlaPheMetTyrG : 142 !!:!|||||||||:!!||||||! :!! !! !:!!..!||| !! !|||:!! LeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisT 232794 : TTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACA : 232853 143 : lyGly : 143 !||| hrGly 232854 : CCGGT : 232858 vulgar: NvOr5 6 143 . KQ414889.1 232456 232858 + 196 M 102 306 G 3 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232457 232858 196 + . gene_id 24 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232457 232858 . + . KQ414889.1 exonerate:protein2genome:local exon 232457 232858 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 232457 232858 196 + . alignment_id 24 ; Query NvOr5 ; Align 232457 7 306 ; Align 232763 112 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 195 Query range: 321 -> 412 Target range: 206050 -> 206401 322 : GluTrpGluAsnGlnAsnThrValSerThrMetThrTyrCysIleLeuLeuIleSerP : 341 ||||||||||||.!.||||||..!:!!..!!!:..!||| !! |||! !||||||! GluTrpGluAsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerC 206051 : GAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTT : 206108 342 : heIlePheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuThrGluGln >>> : 359 !! !||| !:!!||||||.!.||||||||||||:!!||||||! !!!:||| ysThrPheCysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206109 : GTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt... : 206164 360 : > Target Intron 1 >>>> SerLysLysIleGlyGluValThrTyrAlaIleA : 370 81 bp !:! ! :!:||| !..!:!!! !.!!:!:| ++AsnHisValValGlyLeuThrSerCysThrValA 206165 : ......................agAACCACGTCGTGGGATTGACATCTTGCACGGTGA : 206276 371 : snTrpTyrThrLeuSerGlyLysArgAlaValAspLeuIleMetIleIleMetIleAl : 389 |||||||| !||| !!..!!:!!.!||| !..!:!!|||:!!|||||| !!::! snTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSe 206277 : ATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTC : 206333 390 : aSerCysTyrProAlaArgIleThrAlaGlyLysMetValAsnLeuSerLeuGlySer : 408 !!:! |||||| !!:!:!!||||||||||||||| !!.!.:!!||||||!.!||| rAsn---TyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSer 206334 : TAAT---TACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGT : 206387 409 : PheCysAsnVal : 412 ||| !:!!||| PheThrAspVal 206388 : TTCACCGATGTA : 206401 vulgar: NvOr5 321 412 . KQ414889.1 206050 206401 + 195 M 37 111 5 0 2 I 0 77 3 0 2 M 32 96 G 1 0 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206051 206401 195 + . gene_id 25 ; sequence NvOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206051 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206051 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206401 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 206051 206401 195 + . alignment_id 25 ; Query NvOr5 ; Align 206051 322 111 ; Align 206243 359 96 ; Align 206339 392 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 192 Query range: 299 -> 426 Target range: 301620 -> 302160 300 : IleCysPheValGluPheIleGlyCysThrLeuAsnIleCysPheLeuGluTyrTyrP : 319 :!!||| ||| ... ||||||||| ! ||||||..! !! LeuCysAlaValIleLysPheGluSerThrLeuAsnAlaLysPheLeuArgValIle* 301621 : CTCTGCgctgtaattaaatttgaatctACTTTAAATGCAAAGTTTTTACGAGTAATTT : 301678 320 : heIleThrGluTrpGluAsnGlnAsnThrValSerThrMetThrTyrCysIleLeu : 338 .!! !||||||:!!|||...:!!|||:!!:!!! !:!!|||!:!! !! !||| **Phe***GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeu-+ 301679 : GATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGtt : 301735 339 : >>>> Target Intron 1 >>>> LeuIleSerPheIlePheAsnIlePheIleP : 348 80 bp ... |||:::||||||:!!||| ! ++LysPheProPheLeuPheAsnValPheProA 301736 : .........................agAagtttccatttcttttcaatGTATTTCCAC : 301845 349 : heCysTyrIleGlyGluLeuLeuThrGluGlnSerLysLysIleGlyGluValThrTy : 367 ! !! ! !.!! :!! ! !!!: !!!!!!..:!!||||||..!!.!:!!|| rgTyrLeuSerSerPheIleGlyArgAsp***CysSerGlnIleGlySerAlaSerTy 301846 : GGTATTTAAGCAGCTTTATTGGTCGTGATTAGTGTAGCCAAATTGGTTCAGCATCGTA : 301902 368 : rAlaIleAsnTrpTyrThrLeuSerGlyLysArgAlaValAspLeuIleMetIleIle : 386 |! !|||:!!||||||!.!||| !!!.!||||||||| !|||||||||:!::!!! ! rGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSer 301903 : CGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGC : 301959 387 : MetIleAlaSerCysTyrProAlaArgIleThrAlaGlyLysMetValAsnLeuSerL : 406 :!!||| ||| |||||| !!!:!:!!||||||||||||!!::!!:!!||||||| ValIle---SerGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerL 301960 : GTGATA---TCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCT : 302016 407 : euGlySerPheCysAsn >>>> Target Intron 2 >>>> ValIleLysThr : 415 ||..!!!!||| !!::! 82 bp |||:!:|||||| euAsnThrPheSerSer++ ++ValValLysThr 302017 : TGAATACATTCAGCTCTgt.........................agGTGGTGAAAACA : 302125 416 : SerAlaThrTyrLeuAsnLeuLeuArgThrMet : 426 |||!.!..!|||||||||||||||||||||:!: SerValValTyrLeuAsnLeuLeuArgThrVal 302126 : TCGGTGGTGTACTTGAATTTACTGCGAACAGTT : 302160 vulgar: NvOr5 299 426 . KQ414889.1 301620 302160 + 192 M 38 114 5 0 2 I 0 76 3 0 2 M 51 153 G 1 0 M 22 66 5 0 2 I 0 78 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301621 302160 192 + . gene_id 26 ; sequence NvOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301621 301734 . + . KQ414889.1 exonerate:protein2genome:local exon 301621 301734 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301735 301736 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 301735 301814 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301813 301814 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301815 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301815 302033 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302160 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302160 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301621 302160 192 + . alignment_id 26 ; Query NvOr5 ; Align 301621 300 114 ; Align 301815 338 153 ; Align 301968 390 66 ; Align 302116 412 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 5 -> 159 Target range: 194165 -> 194612 6 : SerHisTyrAlaValGlnLeuAsnArgLeuPheLeuThrProIleGlyValTrpProI : 25 !!!.!.|||||||||!:!:!! !:! !.!!|||||||||||||||:!!||||||! ThrGluTyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProA 194166 : ACCGAGTACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAA : 194223 26 : leGlyArgAspAlaProLeuValGlnArgLeuLeuLysArgLeuAlaIleIleGlyCy : 44 ! ! !..! !! ! ! ! ||||||!!! !:! !!.!:!::!! rgGluAspSerLeuArgAspArgValArgLeuPheAlaGlnThrGlyValVal----- 194224 : GGGAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTC----- : 194277 45 : sTyrLeuLeuMetSerTyrLeuLeuValProThrAlaLeuHisThrPheLeuGluGlu : 63 !:! !||||||!!!!:!|||||||||||| !!.!:!!:!!|||!:!!!!!!: -PheAlaLeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCys 194278 : -TTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGC : 194331 64 : ProAspProAlaIleLysLeuLysLeuIleGlyProMetSerPheHisLeuMetAlaI : 83 !|||! !.!!! ! :!!|||:!!|||!.! !!... !||| !|||:!!|||| GluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLeuAlaI 194332 : GAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGA : 194391 84 : leGlyLysTyrValSerLeuValGlyArgThrGluGluIleSerAlaCysPheGluHi : 102 || !|||!:! !!!!:!!:!!! !!.!! !:!!||||||!!! !|||.!. !.! leIleLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGl 194392 : TCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGA : 194448 103 : sValGluGluAspTrpLysMetTyrSerAspLysAsnAlaLysProGluLeuGluMet : 121 .:!!||| ! !..!|||!!!||| !.!...!:!! !!!:! !:!!:!! uMetGlu---------ThrGlnTyrArgAspValGluCysGluGluAspArgGlnVal 194449 : GATGGAG---------ACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTG : 194496 122 : MetLysArgAsnAlaLysIleGlyArgPheLeuIleTyrLeuCysAlaAlaPheMetT : 141 |||! !!.! !||||||||||||||||||!!!! ! !|||! ! !!.!.!! | MetThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerT 194497 : ATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTT : 194556 142 : yrGlyGlyGlyPhePheTyrHisMetIleMetProLeuSerValGlyArgLeuVal : 159 ||||||||!.!!!. ||||||!!:|||:!:||||||! ! !! !|||:!!||| yrGlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluArgIleVal 194557 : ACGGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTC : 194612 vulgar: NvOr5 5 159 . KQ414889.1 194165 194612 + 180 M 37 111 G 2 0 M 60 180 G 3 0 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194166 194612 180 + . gene_id 27 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194166 194612 . + . KQ414889.1 exonerate:protein2genome:local exon 194166 194612 . + . insertions 0 ; deletions 5 KQ414889.1 exonerate:protein2genome:local similarity 194166 194612 180 + . alignment_id 27 ; Query NvOr5 ; Align 194166 6 111 ; Align 194277 45 180 ; Align 194457 108 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 13 -> 171 Target range: 294705 -> 295173 14 : ArgLeuPheLeuThrProIleGlyValTrpPro<->IleGlyArgAspAlaProLeuV : 32 ||| !.!.|||! !|||||||||:!!|||||| ||| !!!! !!.!! ! !: ArgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrSerHisThrSerLysL 294706 : CGAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACAGTCACACCAGCAAAC : 294763 33 : alGlnArgLeuLeuLysArgLeuAlaIleIleGlyCysTyrLeuLeuMetSerTyrLe : 51 !!.!.!:!:!!|||..!! !:!! !||| !!||| ||| !:!: !!:!:! euAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLeuThrValLeuPheVa 294764 : TGAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTTGACCGTACTGTTCGT : 294820 52 : uLeuValProThrAlaLeuHisThrPheLeuGluGluProAspProAlaIleLysLeu : 70 !||||||||| !!.!! ! ! ! ! !!!.!.! ::: :::|||:!! lLeuValProCysGlyTyrPheCysValPheHisValLysAsnValLysLeuLysMet 294821 : TTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaacgtgaaattgaaGATG : 294877 71 : LysLeuIleGlyProMetSerPheHisLeuMetAlaIleGlyLysTyrValSerLeuV : 90 ||||||:!:||||||:!: !!:! !:!!:!::!!!!: !!:!||| !!!!|||| LysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuArgTyrSerCysLeuV 294878 : AAACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCAGGTACAGCTGTCTAG : 294937 91 : alGlyArgThrGluGluIleSerAlaCysPheGluHisValGluGluAspTrpLysMe : 109 || !!:!||| ! !.!!!.! !|||.!!||| !!:!!|||.!.|||||||||:! alLeuLysThrProAlaPheLysHisCysIleGluAspIleGluAsnAspTrpLysLe 294938 : TTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGAGAACGATTGGAAGTT : 294994 110 : tTyrSerAspLysAsnAlaLysProGluLeuGluMetMetLysArgAsnAlaLysIle : 128 ! !..!:!! !.!. !::! ! !!!:|||! !:!||||||! !:!! uIleAspAsnProGluHisArg---------AlaIleMetIleLysAsnAlaMetVal 294995 : GATCGATAATCCGGAACACCGA---------GCGATCATGATCAAGAACGCGATGGTC : 295042 129 : GlyArgPheLeuIleTyrLeuCysAlaAlaPheMetTyrGlyGlyGlyPhePheTyrH : 148 !!:! :!!! ! ! !! !.!! !.!.!!:|||.!!..!!.! ! ! |||| ThrGlnArgMetThrValAlaPheThrIleIleIleTyrSerSerAlaValSerTyrH 295043 : ACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGTCGTATC : 295102 149 : isMetIleMetProLeuSerValGlyArgLeuValThrLysGlnValArgAlaGluAr : 167 || |||:::|||... ... |||! !!.!|||:!! !!.!.!! || isAlaIleValProPhePheSerAsnAlaLeuGluAsnLysLysAsnAsnThrIleAr 295103 : ACGCCATTGtgccatttttttcaaacgctTTGGAGAACAAGAAGAATAATACGATTCG : 295159 168 : gTyrLeuGlnLeu : 171 | |||! !:!! gAlaLeuProIle 295160 : TGCGTTACCAATT : 295173 vulgar: NvOr5 13 171 . KQ414889.1 294705 295173 + 148 M 11 33 G 0 3 M 92 276 G 3 0 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294706 295173 148 + . gene_id 28 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294706 295173 . + . KQ414889.1 exonerate:protein2genome:local exon 294706 295173 . + . insertions 3 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 294706 295173 148 + . alignment_id 28 ; Query NvOr5 ; Align 294706 14 33 ; Align 294742 25 276 ; Align 295018 120 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 201 -> 255 Target range: 304653 -> 304815 202 : TyrValThrLeuLeuLeuValGlnPheValAlaGlyPheValLeuTyrThrIleThrI : 221 |||! ! !:!!! !!!!|||!!.! !:!!..!|||!:!|||:!!|||:!!|||||| TyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIleThrA 304654 : TACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATAACCG : 304711 222 : leAlaSerCysSerLeuAlaAlaValPheAlaAsnHisValCysGlyGlnLeuGluIl : 240 !!.!:!!|||.!!|||||||||:!!||||||!..|||!.!|||||||||:!!!!:|| laGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleAspIl 304712 : CTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTGATAT : 304768 241 : eValMetSerLeuLeuArgAspPheValHisAspAsnGluAspAsn : 255 ||||||||||! !||| !!|||.!!|||:!!..!!!.|||...::! eValMetSerArgLeuGlyAspLeuValAsnSerLysGluSerSer 304769 : CGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCATCT : 304815 vulgar: NvOr5 201 255 . KQ414889.1 304653 304815 + 137 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304654 304815 137 + . gene_id 29 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304654 304815 . + . KQ414889.1 exonerate:protein2genome:local exon 304654 304815 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304654 304815 137 + . alignment_id 29 ; Query NvOr5 ; Align 304654 202 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 313 -> 358 Target range: 214605 -> 214740 314 : PheLeuGluTyrTyrPheIleThrGluTrpGluAsnGlnAsnThrValSerThrMetT : 333 ...::::::::: ...::: ||||||.!.:::.!.||| !..!!!!|||:!:| IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 334 : hrTyrCysIleLeuLeuIleSerPheIlePheAsnIlePheIlePheCysTyrIleGl : 352 ||||| :!:|||! !||||||... ||||||||||||||||||||||||||||| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 353 : yGluLeuLeuThrGluGln : 358 |||||||:!!:!!|||||| yGluLeuValSerGluGln 214721 : CGAGCTTGTGTCTGAACAG : 214740 vulgar: NvOr5 313 358 . KQ414889.1 214605 214740 + 134 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 214740 134 + . gene_id 30 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 214740 134 + . alignment_id 30 ; Query NvOr5 ; Align 214606 314 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 311 -> 386 Target range: 261703 -> 262009 312 : IleCysPheLeuGluTyrTyrPheIleThrGluTrpGluAsnGlnAsnThrValSerT : 331 |||! !||| ::::::...::: ||||||! .!.|||:!!! ! !!:! IlePhePhe***TyrPhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnAsnL 261704 : ATCTTTTTctgatatttctttcttttgcagGAATGGGCTGAGCAAGATATACAAAATC : 261761 332 : hrMetThrTyrCysIleLeuLeuIleSerPheIlePheAsnIlePheIlePheCysTy : 350 ! ||||||! !!!::!!||||||:!!.!! !||||||:!!||||||.!!||||| euSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheIleIleCysTy 261762 : TGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTA : 261818 351 : rIleGlyGluLeuLeu{Th} >>>> Target Intron 1 >>>> {r}GluGln : 358 ||||||||||:!!|||{||} 84 bp {|}:!! rIleGlyGluIleLeu{Th}+- -+{r}GlnCys 261819 : CATCGGTGAAATACTA{AC}gg.........................tg{A}CAGTGC : 261926 359 : SerLysLysIleGlyGluValThrTyrAlaIleAsnTrpTyrThrLeuSerGlyLysA : 378 |||||| :!!|||!!:|||..!||| !! !||||||||| !||| !!! !|||! SerLys---ValGlyAspValValTyrMetThrAsnTrpTyrTyrLeuProAspLysS 261927 : TCGAAA---GTTGGTGACGTTGTTTACATGACAAACTGGTATTATTTACCTGATAAAA : 261983 379 : rgAlaValAspLeuIleMetIleIle : 386 !! !:!!|||||||||:!!|||||| erIleLeuAspLeuIleLeuIleIle 261984 : GTATCCTTGATTTGATTTTGATCATT : 262009 vulgar: NvOr5 311 386 . KQ414889.1 261703 262009 + 134 M 44 132 S 0 2 5 0 2 I 0 80 3 0 2 S 1 1 M 4 12 G 1 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261704 262009 134 + . gene_id 31 ; sequence NvOr5 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 261704 261837 . + . KQ414889.1 exonerate:protein2genome:local exon 261704 261837 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 261838 261839 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local intron 261838 261921 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261920 261921 . + . intron_id 0 ; splice_site "TG" KQ414889.1 exonerate:protein2genome:local cds 261922 262009 . + . KQ414889.1 exonerate:protein2genome:local exon 261922 262009 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 261704 262009 134 + . alignment_id 31 ; Query NvOr5 ; Align 261704 312 132 ; Align 261923 357 12 ; Align 261935 362 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 204 -> 254 Target range: 213409 -> 213559 205 : LeuLeuLeuValGlnPheValAlaGlyPheValLeuTyrThrIleThrIleAlaSerC : 224 !!!!!!|||:!!|||.!!:!!|||||| ! :!!:!!:!!.!!|||.!!:!:!.!:!!| PhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAlaC 213410 : TTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTT : 213467 225 : ysSerLeuAlaAlaValPheAlaAsnHisValCysGlyGlnLeuGluIleValMetSe : 243 ||||||||||||||||||||||| !|||!.!|||||||||:!!! |||:!!||||| ysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSe 213468 : GTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAG : 213524 244 : rLeuLeuArgAspPheValHisAspAsnGluAsp : 254 |! !|||..! !!!!.:!! !!! !!..|||||| rTrpLeuGluHisLeuIleAspGlyArgGluAsp 213525 : CTGGCTGGAACATTTGATAGACGGTAGAGAGGAT : 213559 vulgar: NvOr5 204 254 . KQ414889.1 213409 213559 + 128 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 213410 213559 128 + . gene_id 32 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 213410 213559 . + . KQ414889.1 exonerate:protein2genome:local exon 213410 213559 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 213410 213559 128 + . alignment_id 32 ; Query NvOr5 ; Align 213410 205 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 207 -> 257 Target range: 208758 -> 208908 208 : ValGlnPheValAlaGlyPheValLeuTyrThrIleThrIleAlaSerCysSerLeuA : 227 ||||||!!.:!!:!!||||||||| !:!!!.!||||||:!!!.!:!!|||.!!|||| ValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuA 208759 : GTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGG : 208816 228 : laAlaValPheAlaAsnHisValCysGlyGlnLeuGluIleValMetSerLeuLeuAr : 246 |||||:!!.!!|||! |||!.!||||||||||||:!!|||:!!||||||! !:!!.. laAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGl 208817 : CCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGA : 208873 247 : gAspPheValHisAspAsnGluAspAsnProArg : 257 ! ! !!.||| !!! ...||||||.!. !!:! uLysLeuValAspGlyArgGluAspGluGluLys 208874 : GAAGTTGGTCGATGGACGGGAGGACGAGGAGAAG : 208908 vulgar: NvOr5 207 257 . KQ414889.1 208758 208908 + 126 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208759 208908 126 + . gene_id 33 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208759 208908 . + . KQ414889.1 exonerate:protein2genome:local exon 208759 208908 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208759 208908 126 + . alignment_id 33 ; Query NvOr5 ; Align 208759 208 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 204 -> 255 Target range: 267174 -> 267327 205 : LeuLeuLeuValGlnPheValAlaGlyPheValLeuTyrThrIleThrIleAlaSerC : 224 :!!|||:!! !|||||||||:!!||||||:!!:!! !!:!!! !..!:!!!.!:!!! ValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValValGlyAlaP 267175 : GTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCGGTGCTT : 267232 225 : ysSerLeuAlaAlaValPheAlaAsnHisValCysGlyGlnLeuGluIleValMetSe : 243 !||||||||||||||||||||| !|||!.!||||||||||||...:!::!!|||! heSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerValLeuMetMe 267233 : TCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTGATGAT : 267289 244 : rLeuLeuArgAspPheValHisAspAsnGluAspAsn : 255 !! !:!!!:!!!:||||||:!! ::!..!|||!:! tTrpIleLysGluPheValAsnArgSerArgAspSer 267290 : GTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGC : 267327 vulgar: NvOr5 204 255 . KQ414889.1 267174 267327 + 124 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 267175 267327 124 + . gene_id 34 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 267175 267327 . + . KQ414889.1 exonerate:protein2genome:local exon 267175 267327 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 267175 267327 124 + . alignment_id 34 ; Query NvOr5 ; Align 267175 205 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 313 -> 358 Target range: 291344 -> 291479 314 : PheLeuGluTyrTyrPheIleThrGluTrpGluAsnGlnAsnThrValSerThrMetT : 333 ||| ::: !:!.!! !|||||||||!:!...:!!:!!:!!.!!! !:!:| PheGluThrPheValTyrPhe***GluTrpGluSerSerAspSerIleGlyIleLeuT 291345 : ttcgaaacttttgtaTACTTTTAGGAATGGGAGAGTAGCGATTCGATCGGGATATTAA : 291402 334 : hrTyrCysIleLeuLeuIleSerPheIlePheAsnIlePheIlePheCysTyrIleGl : 352 ||||| !! !||||||! !||||||! !|||||||||.!.||||||||||||:!!|| hrTyrValThrLeuLeuThrSerPheThrPheAsnIleLeuIlePheCysTyrValGl 291403 : CATACGTCACTCTCCTCACTTCTTTCACTTTCAACATACTGATATTCTGTTACGTTGG : 291459 353 : yGluLeuLeuThrGluGln : 358 |||||||||| !! !||| yGluLeuLeuLeuGlyGln 291460 : CGAACTTCTTCTTGGACAG : 291479 vulgar: NvOr5 313 358 . KQ414889.1 291344 291479 + 123 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291345 291479 123 + . gene_id 35 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 291345 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291345 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291345 291479 123 + . alignment_id 35 ; Query NvOr5 ; Align 291345 314 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 204 -> 269 Target range: 263386 -> 263581 205 : LeuLeuLeuValGlnPheValAlaGlyPheValLeuTyrThrIleThrIleAlaSerC : 224 !!!||| !..!||||||:!!:!!||||||:!!:!! !.!!! !|||:!!!.!:!!! PheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaThrThrValGlyAlaP 263387 : TTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTT : 263444 225 : ysSerLeuAlaAlaValPheAlaAsnHisValCysGlyGlnLeuGluIleValMetSe : 243 !.!!:!!.!!||||||||||||..!|||!.!||||||||||||.!.:!::!!||||| heGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSe 263445 : TCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTC : 263501 244 : rLeuLeuArgAspPheValHisAspAsnGluAspAsnProArgIleTyrAlaLeuAla : 262 |! !:!!! !!!:||||||:!!.!.::!..!|||.!. !!:!! ! ! !!!!.!! rTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLysAsnLeuTyrPheThr 263502 : CTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTACC : 263558 263 : AspAspAlaAlaThrValGlu : 269 !!: !.!!.!! !|||||| GluIleGlyValIleValGlu 263559 : GAGATAGGCGTGATCGTTGAA : 263581 vulgar: NvOr5 204 269 . KQ414889.1 263386 263581 + 121 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 263387 263581 121 + . gene_id 36 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 263387 263581 . + . KQ414889.1 exonerate:protein2genome:local exon 263387 263581 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 263387 263581 121 + . alignment_id 36 ; Query NvOr5 ; Align 263387 205 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 177 -> 249 Target range: 284976 -> 285204 178 : ThrAspAsnIleAspValGluProValArgValLeuSerTyrProIleTyr<->GlyL : 196 |||!!:! !|||||| !||| !!|||||| !! !:!!!:!||||||||| |||| ThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyL 284977 : ACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCC : 285034 197 : euLeuAlaLysLeuAspTyrValThrLeuLeuLeuValGlnPhe<-><-><->ValAl : 212 |||||! ! !! ! ! ! !:!!!!! !:!!||||||||| :!!|| euLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAl 285035 : TTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGC : 285091 213 : aGlyPheValLeuTyrThrIleThrIleAlaSerCysSerLeuAlaAlaValPheAla : 231 |!.!||||||:!!|||:!!:!!|||:!!!.!:!!|||||||||||||||||||||!.! aAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheVal 285092 : CGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTC : 285148 232 : AsnHisValCysGlyGlnLeuGluIleValMetSerLeuLeuArgAspPheVal : 249 ! |||||||||||||||!!!..!|||:!!:!!!!! !||| ! ! .!!||| MetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuVal 285149 : ATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTC : 285204 vulgar: NvOr5 177 249 . KQ414889.1 284976 285204 + 121 M 17 51 G 0 3 M 16 48 G 0 9 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284977 285204 121 + . gene_id 37 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284977 285204 . + . KQ414889.1 exonerate:protein2genome:local exon 284977 285204 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284977 285204 121 + . alignment_id 37 ; Query NvOr5 ; Align 284977 178 51 ; Align 285031 195 48 ; Align 285088 211 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 204 -> 254 Target range: 217711 -> 217861 205 : LeuLeuLeuValGlnPheValAlaGlyPheValLeuTyrThrIleThrIleAlaSerC : 224 :!!!!!!!!:!!|||!!.:!!|||||| !:!!:!!:!! !|||||| |||:!!| ValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaC 217712 : GTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTT : 217769 225 : ysSerLeuAlaAlaValPheAlaAsnHisValCysGlyGlnLeuGluIleValMetSe : 243 ||||||||||||||!.!|||||| !|||!.!|||||||||:!!|||:!::!!|||!: ysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGluValLeuMetAs 217770 : GCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAA : 217826 244 : rLeuLeuArgAspPheValHisAspAsnGluAsp : 254 !! !|||!:! !!!!.:!! !!! !!..! !||| nTrpLeuGlnHisLeuIleAspGlyArgAlaAsp 217827 : CTGGCTGCAACATTTAATCGACGGTAGAGCGGAT : 217861 vulgar: NvOr5 204 254 . KQ414889.1 217711 217861 + 118 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217712 217861 118 + . gene_id 38 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217712 217861 . + . KQ414889.1 exonerate:protein2genome:local exon 217712 217861 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217712 217861 118 + . alignment_id 38 ; Query NvOr5 ; Align 217712 205 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 207 -> 254 Target range: 227476 -> 227617 208 : ValGlnPheValAlaGlyPheValLeuTyrThrIleThrIleAlaSerCysSerLeuA : 227 ||||||||||||.!!|||.!!||||||:!! !:!!||| !|||:!!||||||:!!| ValGlnPheValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetA 227477 : GTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGG : 227534 228 : laAlaValPheAlaAsnHisValCysGlyGlnLeuGluIleValMetSerLeuLeuAr : 246 |||||:!!.!!||| !|||!.!|||||||||:!!|||:!::!!:!!|||! !||| ! laAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGl 227535 : CAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGG : 227591 247 : gAspPheValHisAspAsnGluAsp : 254 ! !!!!.:!! !!! !!..! !||| yHisLeuIleAspGlyArgAlaAsp 227592 : ACATTTGATCGACGGCAGAGCGGAT : 227617 vulgar: NvOr5 207 254 . KQ414889.1 227476 227617 + 118 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 227477 227617 118 + . gene_id 39 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 227477 227617 . + . KQ414889.1 exonerate:protein2genome:local exon 227477 227617 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 227477 227617 118 + . alignment_id 39 ; Query NvOr5 ; Align 227477 208 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 204 -> 257 Target range: 260309 -> 260468 205 : LeuLeuLeuValGlnPheValAlaGlyPheValLeuTyrThrIleThrIleAlaSerC : 224 :!!|||:!!||||||||||||:!!||||||:!!:!! !!:!!! !|||:!!!.!! !! ValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrValGlyIleP 260310 : GTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAATCT : 260367 225 : ysSerLeuAlaAlaValPheAlaAsnHisValCysGlyGlnLeuGluIleValMetSe : 243 !|||||||||||||||.!..!! !|||!.!||||||||||||.!.:!::!!|||.. heSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMetGl 260368 : TCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGA : 260424 244 : rLeuLeuArgAspPheValHisAspAsnGluAspAsnProArg : 257 !! !:!!! !!!:|||||| !!!!::::..!:!!!.. !!:! uTrpIleThrGluPheValAspGluSerArgAsnArgLysLys 260425 : ATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAA : 260468 vulgar: NvOr5 204 257 . KQ414889.1 260309 260468 + 117 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 260310 260468 117 + . gene_id 40 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 260310 260468 . + . KQ414889.1 exonerate:protein2genome:local exon 260310 260468 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 260310 260468 117 + . alignment_id 40 ; Query NvOr5 ; Align 260310 205 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 177 -> 245 Target range: 279029 -> 279245 178 : ThrAspAsnIleAspValGluProValArgValLeuSerTyrProIleTyr<->GlyL : 196 |||!!:! !|||||| !||| !!|||||| !! !:!!!:!||||||||| |||| ThrGluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyL 279030 : ACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCC : 279087 197 : euLeuAlaLysLeuAspTyrValThrLeuLeuLeuValGlnPhe<-><-><->ValAl : 212 |||||! ! !! ! ! ! !:!!!!! !:!!||||||||| :!!|| euLeuAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAl 279088 : TCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGC : 279144 213 : aGlyPheValLeuTyrThrIleThrIleAlaSerCysSerLeuAlaAlaValPheAla : 231 |!.!||||||||||||:!!:!!|||:!!!.!:!!||||||||| !|||||||||!.! aAlaPheValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheVal 279145 : CGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTC : 279201 232 : AsnHisValCysGlyGlnLeuGluIleValMetSerLeuLeu : 245 ! |||||||||||||||!!!..!|||:!!:!!!!! !||| MetHisValCysGlyGlnPheArgIleLeuValThrLysLeu 279202 : ATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTG : 279245 vulgar: NvOr5 177 245 . KQ414889.1 279029 279245 + 117 M 17 51 G 0 3 M 16 48 G 0 9 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 279030 279245 117 + . gene_id 41 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 279030 279245 . + . KQ414889.1 exonerate:protein2genome:local exon 279030 279245 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 279030 279245 117 + . alignment_id 41 ; Query NvOr5 ; Align 279030 178 51 ; Align 279084 195 48 ; Align 279141 211 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 318 -> 358 Target range: 272827 -> 272947 319 : PheIleThrGluTrpGluAsnGlnAsnThrValSerThrMetThrTyrCysIleLeuL : 338 |||... |||||| :!!!!.:!! ! !||| !! ||||||! !!!::!!| PhePhe***GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleL 272828 : tttttctaggAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATAC : 272885 339 : euIleSerPheIlePheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuThrGl : 357 ||||||||.!. ||||||||||||||| |||||||||||||||:!!|||||||| euIleSerMetThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGl 272886 : TTATATCCATgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGA : 272942 358 : uGln : 358 |::! uArg 272943 : GAGG : 272947 vulgar: NvOr5 318 358 . KQ414889.1 272827 272947 + 114 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272828 272947 114 + . gene_id 42 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272828 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272828 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272828 272947 114 + . alignment_id 42 ; Query NvOr5 ; Align 272828 319 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 341 -> 412 Target range: 272966 -> 273176 342 : IlePheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuThrGluGlnSerLysL : 361 |||:::||| ! ! !! |||::: ::: ::: ||| |||| IleTyrAsnArgArgArgAspLeuTyrLeuProLysLysAsnSer***GlnCysLysL 272967 : atatacaaTCGAAGACGTGATTTATACttaccgaagaaaaattcttaacagtgtaaaa : 273024 362 : ysIleGlyGluValThrTyrAlaIleAsnTrpTyrThrLeuSerGlyLysArgAlaVa : 380 ||||||||||||||..!||| !! ||||||||| !||| !!|||||| ! !:! ysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProGlyLysAspIleLe 273025 : aaattggcGAGGTAGTTTACATGACGAACTGGTACTATTTACCCGGCAAAGATATCCT : 273081 381 : lAspLeuIleMetIleIleMetIleAlaSerCysTyrProAlaArgIleThrAlaGly : 399 !|||||||||:!!|||||| ! !..!||| ! !!:!|||||||||||| uAspLeuIleLeuIleIleSerArgCysSerValVal---IleLysIleThrAlaGly 273082 : CGATCTGATTTTGATCATCTCAAGATGCAGTGTTGTG---ATTAAAATCACCGCTGGC : 273135 400 : LysMetValAsnLeuSerLeuGlySerPheCysAsnVal : 412 !:!!!:||| !:!!|||:!! !!!!||| !!:!!||| ArgIleValProMetSerValTyrThrPheGlyAspVal 273136 : AGGATAGTTCCCATGTCTGTGTACACGTTCGGCGATGTA : 273176 vulgar: NvOr5 341 412 . KQ414889.1 272966 273176 + 114 M 51 153 G 1 0 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272967 273176 114 + . gene_id 43 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272967 273176 . + . KQ414889.1 exonerate:protein2genome:local exon 272967 273176 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 272967 273176 114 + . alignment_id 43 ; Query NvOr5 ; Align 272967 342 153 ; Align 273120 394 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 357 -> 416 Target range: 297641 -> 297815 358 : GlnSerLysLysIleGlyGluValThrTyrAlaIleAsnTrpTyrThrLeuSerGlyL : 377 |||:!!:!!|||.!!|||.!.!.!.!!||| !|||.!.||||||!.!||| !! !! GlnAlaGluLysPheGlyAsnAlaAlaTyrAsnIleGluTrpTyrAsnLeuProProA 297642 : CAGGCTGAAAAATTCGGCAATGCAGCTTATAACATCGAATGGTACAACTTACCGCCAA : 297699 378 : ysArgAlaValAspLeuIleMetIleIleMetIleAlaSerCysTyrProAlaArgIl : 396 !.||||||:!!||||||:!::!:!!:||| ||||||!.! !:!||| !!|||:! snArgAlaLeuAspLeuValLeuMetIleGlyIleAlaLys---PheProProArgLe 297700 : ACAGGGCTCTCGATCTGGTGTTAATGATCGGTATAGCAAAA---TTTCCACCGAGGCT : 297753 397 : eThrAlaGlyLysMetValAsnLeuSerLeuGlySerPheCysAsnValIleLysThr : 415 !|||...||||||::: ::::::|||:!!..!!!!||| !! !||| !!:: uThrGlyGlyLysIlePheAspIleSerIleAsnThrPheSerAlaValArgArgGln 297754 : CACAggtggaaaaatattcgatatatCGATAAACACGTTCAGTGCCGTACGTAgacaa : 297810 416 : Ser : 416 ||| Ser 297811 : agt : 297815 vulgar: NvOr5 357 416 . KQ414889.1 297641 297815 + 114 M 33 99 G 1 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297642 297815 114 + . gene_id 44 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297642 297815 . + . KQ414889.1 exonerate:protein2genome:local exon 297642 297815 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 297642 297815 114 + . alignment_id 44 ; Query NvOr5 ; Align 297642 358 99 ; Align 297741 392 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 353 -> 412 Target range: 214848 -> 215022 354 : LeuLeuThrGluGlnSerLysLysIleGlyGluValThrTyrAlaIleAsnTrpTyrT : 373 :!!:!! !:!!|||!!!||||||:!!|||||||||:!!||| !|||.!.|||||| IleMetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrA 214849 : ATTATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACC : 214906 374 : hrLeuSerGlyLysArgAlaValAspLeuIleMetIleIleMetIleAlaSerCysTy : 392 !||| !!|||!!.!:! !:!! !! !||| :!:|||||| ! !||| !! rgLeuProGlyAsnLysLysLeuCysCysIle---LeuIleMetAlaMetSerAsnSe 214907 : GATTGCCAGGTAACAAAAAGCTCTGTTGCATT---TTGATCATGGCAATGTCCAATTC : 214960 393 : rProAlaArgIleThrAlaGlyLysMetValAsnLeuSerLeuGlySerPheCysAsn : 411 !!!.!!:!.!!|||||||||!!.||||||.!.||||||:!!.!!!!!||| !!!:! rSerValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSer 214961 : ATCCGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGT : 215017 412 : Val : 412 ||| Val 215018 : GTA : 215022 vulgar: NvOr5 353 412 . KQ414889.1 214848 215022 + 112 M 30 90 G 1 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214849 215022 112 + . gene_id 45 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214849 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214849 215022 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 214849 215022 112 + . alignment_id 45 ; Query NvOr5 ; Align 214849 354 90 ; Align 214939 385 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 204 -> 269 Target range: 274920 -> 275115 205 : LeuLeuLeuValGlnPheValAlaGlyPheValLeuTyrThrIleThrIleAlaSerC : 224 :!!||| ! !|||||||||:!!||||||:!!:!! !!:!!! !.!!:!!!.!:!!! ValLeuAlaSerGlnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaP 274921 : GTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCAT : 274978 225 : ysSerLeuAlaAlaValPheAlaAsnHisValCysGlyGlnLeuGluIleValMetSe : 243 !||||||||||||||||||||| |||!.!! !|||||||||...:!::!!|||! heSerLeuAlaAlaValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIl 274979 : TCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGAT : 275035 244 : rLeuLeuArgAspPheValHisAspAsnGluAspAsnProArgIleTyrAlaLeuAla : 262 !! !:!!! !!!:||||||:!! !!::!..!|||... ::: ...::! eTrpIleThrGluPheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSer 275036 : ATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttcagC : 275092 263 : AspAspAlaAlaThrValGlu : 269 !!: !!.!!.!..!|||||| GluIleGlyValValValGlu 275093 : GAGATCGGCGTGGTTGTCGAA : 275115 vulgar: NvOr5 204 269 . KQ414889.1 274920 275115 + 110 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274921 275115 110 + . gene_id 46 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274921 275115 . + . KQ414889.1 exonerate:protein2genome:local exon 274921 275115 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274921 275115 110 + . alignment_id 46 ; Query NvOr5 ; Align 274921 205 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 201 -> 249 Target range: 300258 -> 300402 202 : TyrValThrLeuLeuLeuValGlnPheValAlaGlyPheValLeuTyrThrIleThrI : 221 |||! :::...... ... !!|||!.!.!.:!!:!!|||!.!:!:|||! TyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTyrAsnValThrT 300259 : TACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTACAACGTGACAA : 300316 222 : leAlaSerCysSerLeuAlaAlaValPheAlaAsnHisValCysGlyGlnLeuGluIl : 240 |||:!!! !||||||||||||:!!|||!.!!.!|||:!!|||||||||:!!:!!|| hrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGlyGlnIleGlnIl 300317 : CGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGACAGATTCAGAT : 300373 241 : eValMetSerLeuLeuArgAspPheVal : 249 | !|||:!! !|||..!|||.!.||| eGlnMetAlaArgLeuGluAspLeuVal 300374 : ACAGATGGCGAGATTGGAGGATCTGGTG : 300402 vulgar: NvOr5 201 249 . KQ414889.1 300258 300402 + 107 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300259 300402 107 + . gene_id 47 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 300259 300402 . + . KQ414889.1 exonerate:protein2genome:local exon 300259 300402 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300259 300402 107 + . alignment_id 47 ; Query NvOr5 ; Align 300259 202 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 357 -> 416 Target range: 238625 -> 238799 358 : GlnSerLysLysIleGlyGluValThrTyrAlaIleAsnTrpTyrThrLeuSerGlyL : 377 |||!!! !|||:!!|||||||||..!||| !! !:!!|||||| !||| !! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 378 : ysArgAlaValAspLeuIleMetIleIleMetIleAlaSerCysTyrProAlaArgIl : 396 :!||| !:!!|||||||||:!!||||||! !||| ! !!.!!:!:! rgArgIleLeuAspLeuIleLeuIleIleLys---ArgSerAsnValValValLysVa 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAA---CGATCGAACGTGGTCGTTAAAGT : 238737 397 : eThrAlaGlyLysMetValAsnLeuSerLeuGlySerPheCysAsnValIleLysThr : 415 !||||||||||||:!::!!:!!:!!|||||| !!!!||| !!:!!|||! !:!!||| lThrAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThr 238738 : CACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 238794 416 : Ser : 416 !:! Asn 238795 : AAT : 238799 vulgar: NvOr5 357 416 . KQ414889.1 238625 238799 + 106 M 30 90 G 1 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238799 106 + . gene_id 48 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238799 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238799 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 238626 238799 106 + . alignment_id 48 ; Query NvOr5 ; Align 238626 358 90 ; Align 238716 389 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 357 -> 415 Target range: 244655 -> 244826 358 : GlnSerLysLysIleGlyGluValThrTyrAlaIleAsnTrpTyrThrLeuSerGlyL : 377 |||!!! !|||:!!|||||||||..!||| !! !:!!|||||| !||| !! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 378 : ysArgAlaValAspLeuIleMetIleIleMetIleAlaSerCysTyrProAlaArgIl : 396 :!||| !:!!|||||||||:!!||||||! !||| ! !!.!..!|| rgArgIleLeuAspLeuIleLeuIleIleLys---ArgSerAsnMetValValGluIl 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAA---CGATCGAACATGGTCGTTGAAAT : 244767 397 : eThrAlaGlyLysMetValAsnLeuSerLeuGlySerPheCysAsnValIleLysThr : 415 |||||||||||||:!::!!:!!:!!|||||| !!!!||| !!:!!|||! !:!!||| eThrAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThr 244768 : CACCGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 244824 vulgar: NvOr5 357 415 . KQ414889.1 244655 244826 + 104 M 30 90 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244826 104 + . gene_id 49 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244826 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244826 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 244656 244826 104 + . alignment_id 49 ; Query NvOr5 ; Align 244656 358 90 ; Align 244746 389 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 357 -> 416 Target range: 254271 -> 254445 358 : GlnSerLysLysIleGlyGluValThrTyrAlaIleAsnTrpTyrThrLeuSerGlyL : 377 |||!!! !|||:!!|||||||||..!||| !! !:!!|||||| !||| !! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 378 : ysArgAlaValAspLeuIleMetIleIleMetIleAlaSerCysTyrProAlaArgIl : 396 :!||| !:!!|||||||||:!!|||||| ! ! !||| ! !!.!..!|| rgArgIleLeuAspLeuIleLeuIleIle---ThrArgSerAsnValValValGluIl 254330 : GAAGAATCCTCGATTTAATTCTGATCATT---ACACGATCGAACGTGGTCGTTGAAAT : 254383 397 : eThrAlaGlyLysMetValAsnLeuSerLeuGlySerPheCysAsnValIleLysThr : 415 |||||||||||||::: ::::::|||||| !!!!||| !!:!!|||! !:!!||| eThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThr 254384 : CACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACT : 254440 416 : Ser : 416 !:! Asn 254441 : AAT : 254445 vulgar: NvOr5 357 416 . KQ414889.1 254271 254445 + 103 M 29 87 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254445 103 + . gene_id 50 ; sequence NvOr5 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254445 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254445 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 254272 254445 103 + . alignment_id 50 ; Query NvOr5 ; Align 254272 358 87 ; Align 254359 388 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 320 -> 402 Target range: 807344 -> 807590 321 : IleLeuLeuAlaProPheThrThrAsnIleLeuUnkGluGlnCysThrArgValGlyS : 340 :!:! !||| ! !!!:!.!! !|||! !||| ..!!:! ! !..!:!!!.!. LeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluIleAlaG 807345 : CTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCAC : 807402 341 : erIleTyrHisThrIleAspTrpTyrAsnLeuProGlyLysSerAlaSerAspLeuPh : 359 .! ! !:!! ! ! !||||||..!! !! !||| ! :!!|||!!!||||||.! lnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLe 807403 : AAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCT : 807459 360 : ePheIleIleAlaValSerArgTyrProAlaLysLeuThrAlaGlyLysPheValAsp : 378 !!!.|||||| ! !.!!!.!! ||| !::::!!|||||||||||||||||| uLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheValPro 807460 : TTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCG : 807516 379 : LeuArgLeuValThrPheSerAsnValMetLysSerAlaPheThrTyrPheAsnLeuI : 398 :!!!.!||| !!||||||!.!.!.:!!:!!|||:!!:!! !:!!|||.!.::!:!!! MetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSerValM 807517 : ATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAA : 807576 399 : leArgIleValIle : 402 !:!:!:!!:!!!!: etLysValMetMet 807577 : TGAAGGTAATGATG : 807590 vulgar: NvOr4PSE 320 402 . KQ414940.1 807344 807590 + 121 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807345 807590 121 + . gene_id 1 ; sequence NvOr4PSE ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807345 807590 . + . KQ414940.1 exonerate:protein2genome:local exon 807345 807590 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807345 807590 121 + . alignment_id 1 ; Query NvOr4PSE ; Align 807345 321 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr16 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 208 Query range: 166 -> 399 Target range: 806460 -> 807578 167 : AsnSerThrLysLeuArgProGlnTyrMetArgAlaHisPheAlaTyrAspValGlnL : 186 |||..!||| ! :::::: !.!!|||! !!.!!:!! ! ! ! AsnAspThrAlaArgLeuAsnTyrPheLeuAlaThrHisCysValPheGlyProLeuP 806461 : AACGATACAGCGagattgaattatttcttgGCCACGCACTGCGTGTTCGGCCCTTTAC : 806518 187 : ysSerProValTyrGluIleValTrpIlePheGlnCysIleAlaMetHisLeuAlaGl : 205 !! !! ! !:!!! !|||! :!:.!.||| ! !!: !!!: !!!! !!. roLeuGlnHisHisValCysValLeuLeuLeuGlnGlyMetHisIlePhePheAsnAl 806519 : CGTTGCAGCATCACGTCTGCGTGTTACTGCTGCAAGGGATGCACATTTTCTTCAACGC : 806575 206 : yLeuSerPheMetAlaIleAspSerLeuPheSerIleLeuValLeuHisLeuCysGly : 224 !:!!:!! ! !.!! !|||.!!||||||! !! !|||..!:!!|||||||||||| aValAlaHisCysGlyAsnAspGlyLeuPhePheSerLeuThrMetHisLeuCysGly 806576 : CGTGGCTCACTGCGGCAACGACGGCCTCTTCTTCAGCCTGACGATGCATCTGTGCGGT : 806632 225 : GlnLeuIleAsnLeuGlnGluArgLeuLysAsnValThrGluAsnLeuThrLysArgH : 244 |||!!! !! !|||:!! ! !|||:!!.!!|||! ! ! !:!! ! GlnPheGluIleLeuLys---------MetAsnLeuAlaGluIleGluPheGluAlaI 806633 : CAGTTTGAAATTCTGAAG---------ATGAATCTGGCGGAGATCGAGTTCGAGGCGA : 806683 245 : isAsnLeuSerTyrGlnLeuSerArgIleValMetArgHisGluGlnLeuAspArgPh : 263 ! !! ! !! ! !:!:!!.!! !:!!|||! |||||| :!!|||! !!! leAlaCysArgLysArgIleGlyValLeuValLysArgHisCysLysLeuAlaValLe 806684 : TCGCTTGTCGGAAGCGAATCGGCGTTCTCGTGAAACGACACTGCAAACTGGCGGTGTT : 806740 264 : eAlaLysAlaIleGluAsnAlaPheAsnThrMetPheLeuAlaGlnIleLeuLeuSer : 282 ..!!!!.! !:!!|||.!.::!|||!:!! !!!:.!!|||!.!|||:!!:!!:!!||| uThrAsnAspLeuGluGlnSerPheSerMetIleIleLeuValGlnLeuMetMetSer 806741 : GACCAACGATCTCGAGCAGAGCTTCAGTATGATTATTCTGGTGCAACTCATGATGAGT : 806797 283 : GlyValValLeuCysLeuGln{G} >>>> Target Intron 1 >>>> {ly}T : 291 !.!:!!:!!:!!|||:!!:!!{|} 437 bp {||}! AlaLeuLeuIleCysValGlu{G}++ ++{ly}P 806798 : GCGTTGCTAATTTGCGTAGAA{G}gt.........................ag{GT}T : 807261 292 : yrGlnIleValIleIleLeuThrSerArgAspThrValGlnValThrGluLeuLeuPh : 310 :! .!!:!!:!! !|||!:!!!!!:!|||!.!||| !!.! !..! !!!! ! heValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheVa 807262 : TCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGT : 807318 311 : eMetIleTyrPheIleLeuCysIleAlaPheSerLeuPheIleTyrCysTyrIleAla : 329 !:!!!!: !:!:||| .!!..!|||!:!:!!|||..!||| !.! lLeuMetValThrLeuLeu---------IleGlnLeuTyrLeuTyrAlaTyrAlaGly 807319 : TCTGATGGTGACTTTGCTG---------ATTCAGCTGTACCTTTACGCCTACGCGGGC : 807366 330 : GluIleLeuArgThrGluSerThrGluIleGlyAsnAlaAlaTyrGluCysAsnTrpT : 349 .!.! !|||..!:!!..!!!! !||||||!.!.!.|||||||||!!:! ! !|||| AsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpT 807367 : AACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGT : 807426 350 : yrAspLeuProAlaCysGluThrArgLeuPheIleLeuThrMetIleArgSerLysTh : 368 || !! !! !!.! !! !.!!||| !.!!:!!|||! !!!: !|||.!!!!.:! yrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSe 807427 : ACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTC : 807483 369 : rProPheGluIleThrAlaGlyLysPheThrAlaPheSerLeuGlnLeuTyrCysSer : 387 !|||!:!...||||||||||||||||||..! !!.!.!:!||| !!:! ..! rProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGlu 807484 : GCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAG : 807540 388 : IleLeuLysThrSerGlyGlyTyrLeuSerMetLeu : 399 |||||||||.!!||||||..!|||||||||:!::!! IleLeuLysAlaSerGlySerTyrLeuSerValMet 807541 : ATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATG : 807578 vulgar: NvOr16 166 399 . KQ414940.1 806460 807578 + 208 M 64 192 G 3 0 M 56 168 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 26 78 G 3 0 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806461 807578 208 + . gene_id 1 ; sequence NvOr16 ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 806461 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806461 806821 . + . insertions 0 ; deletions 3 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807258 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807578 . + . insertions 0 ; deletions 3 KQ414940.1 exonerate:protein2genome:local similarity 806461 807578 208 + . alignment_id 1 ; Query NvOr16 ; Align 806461 167 192 ; Align 806653 234 168 ; Align 807261 291 78 ; Align 807339 320 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 290 -> 400 Target range: 807257 -> 807587 291 : GlyTyrTyrLeuIleThrGluTyrGluGlnArgGluProIleAlaThrValThrTyrP : 310 |||!:! !!!!:!:..!! ... !!:!!!: !:!!|||.!!:!!! ! !| GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 311 : heLeuLeuLeuCysSerPheValPheAsnIlePheIleLeuCysTyrIleGlyGluIl : 329 ||:!!|||:!! !!!!!.:!!.!!.!.:!:!:!:!!! !..!||| |||.!.! heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 330 : eLeuThrGluGlnCysGluSerIleGlyThrThrAlaTyrMetIleArgTrpTyrHis : 348 !||| !..!!:! !|||..!|||!.! !.!!|||||| !! !||||||!.! rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 349 : LeuSerGlyLysGluAlaArgAsnValValLeuIleIleAlaSerThrGlnArgProV : 368 ! ! !||| ! ! !||||||:!!:!!:!!||||||||| ! !! !.!. !||| CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 369 : alValMetThrAlaGlyLysMetValAsnLeuSerLeuGlnSerPheThrAsnValIl : 387 ! !!!:||||||||||||.!.||| :!!!:!||| !!!|||! !.!.:!!:! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 388 : eLysAlaSerAlaSerTyrLeuAsnMetLeuArgThrVal : 400 :|||||||||!.!|||||||||::!:!::!!!:!..!:!! uLysAlaSerGlySerTyrLeuSerValMetLysValMet 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: NvOr9 290 400 . KQ414940.1 807257 807587 + 174 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807587 174 + . gene_id 1 ; sequence NvOr9 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807587 174 + . alignment_id 1 ; Query NvOr9 ; Align 807258 291 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 196 Query range: 293 -> 401 Target range: 807257 -> 807581 294 : GlyTyrTyrPheIleThrGluTyrGluGlnArgGluSerIleAlaThrIleThrTyrP : 313 |||!:! !|||:!:..!! ... !!:!!!:!:!:!!|||.!!:!:! ! !| GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 314 : hePheLeuLeuMetSerPheValPheAsnIlePheIleLeuCysTyrIleGlyGlnVa : 332 || !!|||:!!:!!!!!!!.:!!.!!.!.:!:!:!:!!! !..!||| |||.!... heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 333 : lLeuThrGluLysCysGluSerIleAlaLysAlaAlaTyrThrThrLysTrpTyrGln : 351 !||| !..!::! !|||..!||||||:!!||||||||| !:!! ||||||!:: rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 352 : LeuThrGlyLysGluAlaArgSerIleValPheIleValSerCysAsnHisArgProV : 371 ! ! !||| ! ! !||||||..!:!!:!!!!.|||:!! ! ! ...:!! !||| CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 372 : alGluLeuThrAlaGlyLysLeuLeuLysLeuSerLeuAsnSerPheSerSerIleIl : 390 !...:!!||||||||||||!!!:!! !:!!!:!||| !!!!|||!.!..!|||:! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 391 : eLysAlaAlaAlaGlyTyrLeuAsnIleLeuArg : 401 :||||||:!!!.!..!||||||::!:!!:!!!:! uLysAlaSerGlySerTyrLeuSerValMetLys 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: NvOr7 293 401 . KQ414940.1 807257 807581 + 196 M 108 324 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807581 196 + . gene_id 1 ; sequence NvOr7 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807581 196 + . alignment_id 1 ; Query NvOr7 ; Align 807258 294 324 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr15 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 200 Query range: 197 -> 399 Target range: 806568 -> 807593 198 : PheGlyGlyCysAlaPheAlaSerAlaAspAlaLeuPheValAlaLeuValPheHisL : 217 |||..!!.! ||| !..!.!! !|||!.!|||||| !!::!|||..!.!.|||| PheAsnAlaValAlaHisCysGlyAsnAspGlyLeuPhePheSerLeuThrMetHisL 806569 : TTCAACGCCGTGGCTCACTGCGGCAACGACGGCCTCTTCTTCAGCCTGACGATGCATC : 806626 218 : euCysGlyGlnLeuThrAsnLeuGlnThrGluPheArgGluValGlyLysAsnThrSe : 236 |||||||||||!!! !! !|||:!!! !.!..!. !|||:!! .. euCysGlyGlnPheGluIleLeuLysMetAsnLeuAlaGluIle------------Gl 806627 : TGTGCGGTCAGTTTGAAATTCTGAAGATGAATCTGGCGGAGATC------------GA : 806671 237 : rGlyLysLysLeuGluPheValArgSerLeuAlaArgIleIleLysLysHisArgArg : 255 ! !:!! !:!!! ! ! !!:! !!:!!!.! !:!!:!:|||::!||| !!!:! uPheGluAlaIleAlaCysArgLysArgIleGlyValLeuValLysArgHisCysLys 806672 : GTTCGAGGCGATCGCTTGTCGGAAGCGAATCGGCGTTCTCGTGAAACGACACTGCAAA : 806728 256 : IleCysHisMetAlaAspThrValGluTyrCysPheAsnLysIleTyrLeuValGlnV : 275 :!:... :!!.!!:!! !:!!||| ! !!|||!:!! !||| !|||||||||: LeuAlaValLeuThrAsnAspLeuGluGlnSerPheSerMetIleIleLeuValGlnL 806729 : CTGGCGGTGTTGACCAACGATCTCGAGCAGAGCTTCAGTATGATTATTCTGGTGCAAC : 806788 276 : alSerSerSerSerValIlePheCysLeuHis{G} >>>> Target Intron 1 : 286 !!! !! !|||:!!:!!:!!.!!|||:!!.!.{|} 437 bp euMetMetSerAlaLeuLeuIleCysValGlu{G}++ 806789 : TCATGATGAGTGCGTTGCTAATTTGCGTAGAA{G}gt..................... : 806824 287 : >>>> {ly}TyrSerLeuValThrIleLeuPheAspGlnAspAspValValValGlu : 302 {||}!:! !!!!:!!..! !||| ! :!!|||:!!|||!.!!.! ! ++{ly}PheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeu 806825 : ....ag{GT}TTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTG : 807306 303 : LeuIleValMetThrPhePheThrLeuGlyPheIleTyrSerMetPheValTyrCysT : 322 !! ! !!:!: !.!. ! |||||| :!: !..!:!!!:!:!!|||..!| ArgSerPheValLeuMetValThrLeu------LeuIleGlnLeuTyrLeuTyrAlaT 807307 : AGGAGCTTCGTTCTGATGGTGACTTTG------CTGATTCAGCTGTACCTTTACGCCT : 807360 323 : yrValAlaGluCysLeuSerThrGluSerLeuAlaLeuSerSerAlaIlePheAspAs : 341 ||!.!!.!.!. |||..!:!!..!!!! !! !:!!:!!..!||| !!:!|||:: yrAlaGlyAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSe 807361 : ACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTC : 807417 342 : nThrTrpTyrAspLeuProProLysHisAlaLysLeuLeuLeuLeuProLeuGlnArg : 360 ! !|||||| !! !! ! ! ! |||!:! !||||||||| !:!!!!.||| rLeuTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArg 807418 : TCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGA : 807474 361 : ThrGlyLysProLeuIleValThrAlaGlyLysPheValValPheSerLeuAsnLeuP : 380 !..!..!|||! ! !:!!|||||||||||||||||| !.!.!:!||| ! !| GlyAsnSerProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrP 807475 : GGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTT : 807534 381 : heSerAsnIleIleLysThrSerAlaGlyTyrLeuSerMetLeuLeuAlaLeuArgGl : 399 ||!.!.!.|||:!:|||.!!|||!.!..!|||||||||:!::!! !!.!:!!! !!! heLysGluIleLeuLysAlaSerGlySerTyrLeuSerValMetLysValMetMetAs 807535 : TCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGA : 807591 400 : u : 399 : p 807592 : C : 807593 vulgar: NvOr15 197 399 . KQ414940.1 806568 807593 + 200 M 34 102 G 4 0 M 50 150 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 25 75 G 2 0 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806569 807593 200 + . gene_id 1 ; sequence NvOr15 ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 806569 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806569 806821 . + . insertions 0 ; deletions 4 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807258 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807593 . + . insertions 0 ; deletions 2 KQ414940.1 exonerate:protein2genome:local similarity 806569 807593 200 + . alignment_id 1 ; Query NvOr15 ; Align 806569 198 102 ; Align 806671 236 150 ; Align 807261 287 75 ; Align 807336 314 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 316 -> 427 Target range: 807260 -> 807590 317 : TyrTyrPheIleThrGluTrpGluAsnGlnAsnThrValSerThrMetThrTyrCysI : 336 !:! !|||:!:..!! !...!..:!!:!!!.!|||:!!.!!:!!! ! !! !: PheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheV 807261 : TTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCG : 807318 337 : leLeuLeuIleSerPheIlePheAsnIlePheIlePheCysTyrIleGlyGluLeuLe : 355 !!|||:!!:!:!!!!!.:!:.!!.!.:!:!:!:!!!:!..!||| |||.!. !|| alLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLe 807319 : TTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACT : 807375 356 : uThrGluGlnSerLysLysIleGlyGluValThrTyrAlaIleAsnTrpTyrThrLeu : 374 | !..!!:!!!!:!!:!!|||!.!:!!!.!.!!|||! ! ! !|||||| !! ! uGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCys 807376 : CGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGC : 807432 375 : SerGlyLysArgAlaValAspLeuIleMetIleIleMetIleAlaSerCysTyrProA : 394 !||| ! !||| !||||||:!!:!!|||||| !!.!!:!! ||| HisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSer---ProT 807433 : CACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCG---CCTT : 807489 395 : laArgIleThrAlaGlyLysMetValAsnLeuSerLeuGlySerPheCysAsnValIl : 413 !||||||||||||||||||.!.||| :!!!:!||| !!!!||| .!.:!!:! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 414 : eLysThrSerAlaThrTyrLeuAsnLeuLeuArgThrMetMet : 427 :|||.!!|||!.!:!!||||||::!:!!:!!!:!..!|||||| uLysAlaSerGlySerTyrLeuSerValMetLysValMetMet 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATG : 807590 vulgar: NvOr5 316 427 . KQ414940.1 807260 807590 + 165 M 75 225 G 1 0 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807261 807590 165 + . gene_id 1 ; sequence NvOr5 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807261 807590 . + . KQ414940.1 exonerate:protein2genome:local exon 807261 807590 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807261 807590 165 + . alignment_id 1 ; Query NvOr5 ; Align 807261 317 225 ; Align 807486 393 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr11FIX Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 234 Query range: 220 -> 415 Target range: 806565 -> 807578 221 : PhePheAlaAlaThrThrTyrThrSerIleAspSerLeuPheIleValLeuMetLeuH : 240 |||||| !|||..!.!!:!! !.!!! !|||.!!||||||.!! !|||! !:!!| PhePheAsnAlaValAlaHisCysGlyAsnAspGlyLeuPhePheSerLeuThrMetH 806566 : TTCTTCAACGCCGTGGCTCACTGCGGCAACGACGGCCTCTTCTTCAGCCTGACGATGC : 806623 241 : isLeuCysGlyGlnLeuSerValLeuArgLeuLysPheProGlyLeuLysGlyCysSe : 259 ||||||||||||||!!!..!:!!|||!:!:!!!!..!. !!! !:!!:!! ! !.. isLeuCysGlyGlnPheGluIleLeuLysMetAsnLeuAlaGluIleGlu---PheGl 806624 : ATCTGTGCGGTCAGTTTGAAATTCTGAAGATGAATCTGGCGGAGATCGAG---TTCGA : 806677 260 : rGlyAsnGluPheAlaGluLysIleAlaTyrIleHisArgArgHisAspGlnLeuThr : 278 !!.!! !! ! ! !:!!::!|||!.! !:!! !:!|||||| !:!!|||.!! uAlaIleAlaCysArgLysArgIleGlyValLeuValLysArgHisCysLysLeuAla 806678 : GGCGATCGCTTGTCGGAAGCGAATCGGCGTTCTCGTGAAACGACACTGCAAACTGGCG : 806734 279 : ValCysAlaAsnThrIleGluGluValPheAsnLysThrPheLeuLeuGlnIleIleT : 298 |||! .!!||| !:!!|||:!! !|||!:!! !! !.!!|||:!!|||:!!!!:! ValLeuThrAsnAspLeuGluGlnSerPheSerMetIleIleLeuValGlnLeuMetM 806735 : GTGTTGACCAACGATCTCGAGCAGAGCTTCAGTATGATTATTCTGGTGCAACTCATGA : 806794 299 : hrSerSerPheValLeuCysMetLeuGlyTyrGlnIleMetThrIle >>>> Targ : 314 !|||:!!!!.:!!:!!|||:!: !||| ! ..!:!:.!. !! ! etSerAlaLeuLeuIleCysValGluGlyGluSerLeuPheGlyLys++ 806795 : TGAGTGCGTTGCTAATTTGCGTAGAAGGTGAGTCGTTGTTCGGAAAAgt......... : 806844 315 : et Intron 1 >>>> ThrAsnGlyAsnAsnIleProPheMetGluLeuValPheM : 327 431 bp ..! ! !!:!!..! ! !:!:! ! !:!! ! -+ValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgS 806845 : ................tgGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGA : 807312 328 : etIleTyrTyrValIleCysPheLeuPheIleThrPheThrTyrCysTyrMetAlaGl : 346 .!! ! :!!:!: !!!.|||.!! !!:! !|||..!||| !!.!.! erPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807313 : GCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 347 : uLysLeuArgGluLysSerValAspIleSerAspAlaAlaTyrGlnCysAspTrpTyr : 365 .! !|||..!..!::!!!!! !!!:|||:!!.!.|||||||||.!.! ! !|||||| nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 366 : AspLeuThrProGlnGlnSerLysGlnLeuIleIleIleMetLeuArgAlaArgArgP : 385 !! ! ! !!!. !:!!!:!.!.|||:!!:!:|||!!:! !|||!.!!.! !| ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 386 : roLeuGlnValThrAlaGlyLysPheValAlaPheSerLeuSerLeuTyrCysSerIl : 404 ||! !!:::!!|||||||||||||||||| !!.!.!:!|||! ! !!:! ..!|| roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 405 : eLeuLysSerSerGlyGlyTyrMetSerMetLeu : 415 |||||||:!!||||||..!|||:!!|||:!::!! eLeuLysAlaSerGlySerTyrLeuSerValMet 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATG : 807578 vulgar: NvOr11FIX 220 415 . KQ414940.1 806565 807578 + 234 M 36 108 G 1 0 M 56 168 5 0 2 I 0 427 3 0 2 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806566 807578 234 + . gene_id 1 ; sequence NvOr11FIX ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 806566 806841 . + . KQ414940.1 exonerate:protein2genome:local exon 806566 806841 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local splice5 806842 806843 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806842 807272 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 807271 807272 . + . intron_id 0 ; splice_site "TG" KQ414940.1 exonerate:protein2genome:local cds 807273 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807273 807578 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 806566 807578 234 + . alignment_id 1 ; Query NvOr11FIX ; Align 806566 221 108 ; Align 806674 258 168 ; Align 807273 314 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr14 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 313 -> 398 Target range: 807338 -> 807593 314 : PheSerLeuPheValTyrCysTyrValAlaGluGluLeuArgPheGluSerThrGluL : 333 .!!..!|||!:!:!!|||..!|||!.!!.!.!. !|||..!! ..!!!! !|||: IleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluI 807339 : ATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAA : 807396 334 : euAspTyrAlaAlaTyrAspSerAspTrpTyrAsnLeuProProLysAspThrLysLe : 352 !!! ! ||||||||||||||| !||||||..!! !! ! ! ! ! .!!!:! leAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAs 807397 : TTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGA : 807453 353 : uLeuLeuLeuLeuMetHisArgSerArgLysProLeuGluIleThrAlaGlyLysPhe : 371 !|||||||||:!!!!:||||||.!!!.!..!|||! !...|||||||||||||||||| pLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPhe 807454 : TCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTC : 807510 372 : CysAlaPheSerLeuArgLeuTyrCysSerIleLeuLysThrSerGlyGlyTyrLeuS : 391 ! !!.!.!:!||| ! !!:! ..!|||||||||.!!||||||..!||||||| ValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuS 807511 : GTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGT : 807570 392 : erMetLeuLeuAlaValLysAsp : 398 ||:!::!! !!.!:!!! !||| erValMetLysValMetMetAsp 807571 : CTGTAATGAAGGTAATGATGGAC : 807593 vulgar: NvOr14 313 398 . KQ414940.1 807338 807593 + 164 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807339 807593 164 + . gene_id 1 ; sequence NvOr14 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807339 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807339 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807339 807593 164 + . alignment_id 1 ; Query NvOr14 ; Align 807339 314 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr12 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 296 -> 406 Target range: 807263 -> 807593 297 : IleIleLeuThrGlyArgAspThrValGlnIleIleGluLeuLeuPheMetValTyrT : 316 :!!.!!|||..!!.!! !..!||| !.!.! !:!!! ! !||| ! !! ! ValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValL 807264 : GTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTC : 807321 317 : yrThrLeuCysPheAlaPheSerLeuPheValTyrCysTyrIleAlaGluIleLeuAr : 335 ! !:!! !!!. !.!!..!|||!:!:!!|||..!||| !.!.!.! !|||.. euMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGl 807322 : TGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGA : 807378 336 : gIleGluSerMetGluIleGlyAsnAlaAlaTyrHisCysAspTrpTyrAspLeuSer : 354 ! ..!!!! ||||||!.!.!.||||||||| !!! ! !|||||| !! ! ! uSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHis 807379 : GTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCAC : 807435 355 : AlaPheGluArgArgLeuPheIleLeuThrIleIleArgSerLysThrProPheGluI : 374 !.! !! ! !||| !.!!:!!|||! !||| !|||.!!!!.:!!|||!:!...| GlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgI 807436 : GGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTA : 807495 375 : leThrAlaGlyLysPheAlaAlaPheSerLeuGluPheTyrCysSerIleLeuLysTh : 393 |||||||||||||||||!.! !!.!.!:!||| !!:! ..!|||||||||.! leThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAl 807496 : TAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGC : 807552 394 : rSerGlyGlyTyrLeuSerValLeuLeuAlaValGlnAsp : 406 !||||||..!||||||||||||:!! !!.!:!!..!||| aSerGlySerTyrLeuSerValMetLysValMetMetAsp 807553 : TTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: NvOr12 296 406 . KQ414940.1 807263 807593 + 152 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807264 807593 152 + . gene_id 1 ; sequence NvOr12 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807264 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807264 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807264 807593 152 + . alignment_id 1 ; Query NvOr12 ; Align 807264 297 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr13 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 329 -> 415 Target range: 807320 -> 807578 330 : PheLeuValLeuPheLeuPheThrIlePheThrTyrCysTyrValThrGluIleLeuA : 349 .!.:!!||| !!!.|||.!! !:!:!:! !|||..!|||!.! !.!.! !|||. LeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuG 807321 : CTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCG : 807378 350 : rgCysLysSerLeuGluLeuSerTyrAlaValTyrAspCysAspTrpThrIleLeuPr : 368 .!! ::!!!! !|||:!!:!! ! |||!.!||||||! ! !||| ! !! !! luSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHi 807379 : AGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCA : 807435 369 : oAlaLysGluAlaArgIleLeuLeuLeuIleLeuValArgThrGlnHisProPheGlu : 387 !!.! ! ! !|||||| !||||||||||||:!! !||| !.!. |||!:!... sGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArg 807436 : CGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGT : 807492 388 : IleThrAlaGlyLysPheAlaSerPheSerLeuProPheTyrCysArgIleLeuLysT : 407 ||||||||||||||||||!.! !!.!.!:!||| ! !!:! ..!|||||||||. IleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysA 807493 : ATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAG : 807552 408 : hrSerAlaGlyTyrLeuSerMetLeu : 415 !!|||!.!..!|||||||||:!::!! laSerGlySerTyrLeuSerValMet 807553 : CTTCTGGCTCGTATCTGTCTGTAATG : 807578 vulgar: NvOr13 329 415 . KQ414940.1 807320 807578 + 142 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807321 807578 142 + . gene_id 1 ; sequence NvOr13 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807321 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807321 807578 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807321 807578 142 + . alignment_id 1 ; Query NvOr13 ; Align 807321 330 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr8 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 330 -> 398 Target range: 4381 -> 4088 331 : GlnCysAlaSerAlaGlyAlaAlaValTyrThrMetAspTrpPheArgPheSerAlaLysLy : 351 |||||| !!.!!.!|||! !!.!||||||! !! ||||||!:! !.!. !! !!:!!: GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 352 : sSerArgAspLeuPheLeuIleValLeuPheCysGlnArgProValValIleThrAlaGlyL : 372 !! !! !||||||.!!||||||:!! ! ! .!. ! !|||! !||||||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 373 : ysMetValAsnPheSerLeuLeuSerPheAlaSer >>>> Target Intron 1 >>>> : 384 ||::: :::...||||||! !!!!|||!.!..! 89 bp ysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATgt......................... : 4220 385 : LeuMetLysAlaSerAlaAlaTyrLeuAsnMetLeuTyrLysMet : 398 :!!:!:|||.!!.!! !||||||||||||||||||! !:!!||| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMet 4219 : agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAAATG : 4089 vulgar: NvOr8 330 398 . LHQN01027980.1 4381 4088 - 130 M 53 159 5 0 2 I 0 85 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4089 4381 130 - . gene_id 1 ; sequence NvOr8 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4223 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4089 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4089 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4089 4381 130 - . alignment_id 1 ; Query NvOr8 ; Align 4382 331 159 ; Align 4134 384 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr10 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 333 -> 392 Target range: 4381 -> 4204 334 : GlnCysGluAsnIleGlyGluValAlaTyrMetIleAsnTrpTyrGlnPheSerGlyLysAs : 354 |||||| !!!.:!!|||||||||!.!||||||! !:!!|||||| ! .!. !! !!:! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 355 : pAlaArgAsnIleIleLeuIleValAlaSerThrGlnArgProValValLeuThrAlaGlyL : 375 !! !:!!:!!|||||||||:!!.!! !!:!!.!. ! !|||! !:!!|||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 376 : ysMetValThrLeuSerIleArgSerPheCysAsnValIleLysAlaSerVal : 392 ||::: :::|||:!! !!!!||| !!:!!|||! !:!!.!!!:!:!! ysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeu 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTT : 4205 vulgar: NvOr10 333 392 . LHQN01027980.1 4381 4204 - 103 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4205 4381 103 - . gene_id 1 ; sequence NvOr10 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4205 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4205 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4205 4381 103 - . alignment_id 1 ; Query NvOr10 ; Align 4382 334 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr5 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 357 -> 416 Target range: 4381 -> 4207 358 : GlnSerLysLysIleGlyGluValThrTyrAlaIleAsnTrpTyrThrLeuSerGlyLysAr : 378 |||!!! !|||:!!|||||||||..!||| !! !:!!|||||| !||| !! !!:!|| GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 379 : gAlaValAspLeuIleMetIleIleMetIleAlaSerCysTyrProAlaArgIleThrAlaG : 399 | !:!!|||||||||:!!|||||| ! ! !||| ! !!.!..!|||||||||| gIleLeuAspLeuIleLeuIleIle---ThrArgSerAsnValValValGluIleThrAlaG 4320 : AATCCTCGATTTAATTCTGATCATT---ACACGATCGAACGTGGTCGTTGAAATCACCGctg : 4261 400 : lyLysMetValAsnLeuSerLeuGlySerPheCysAsnValIleLysThrSer : 416 |||||::: ::::::|||||| !!!!||| !!:!!|||! !:!!|||!:! lyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 4260 : gaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 4208 vulgar: NvOr5 357 416 . LHQN01027980.1 4381 4207 - 103 M 29 87 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4208 4381 103 - . gene_id 1 ; sequence NvOr5 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4208 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4208 4381 . - . insertions 0 ; deletions 1 LHQN01027980.1 exonerate:protein2genome:local similarity 4208 4381 103 - . alignment_id 1 ; Query NvOr5 ; Align 4382 358 87 ; Align 4295 388 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 183 Query range: 24 -> 161 Target range: 444 -> 36 25 : AspTyrAlaValGlnLeuThrArgLeuLeuLeuMetProCysGlyIleTrpProAlaLysPheS : 46 ||||||::!:!!|||! !!.!|||! ! !:!!! ! |||! !|||||| :!!|||| AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpPro---GlnPheS 444 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCA---CAGTTCT : 384 47 : erSerArgValGlnArgPheLeuArgProPheLeuIleValAlaCysCysPheValMetLeuPh : 67 |||||!.!:!!:!!||| !:!! !! !.!.|||! !||| !|||! ! !!.!!!:||||| erSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPh 383 : CGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATT : 321 68 : eLeuLeuValProValCysLeuPheMetPheLeuIleValArgAspValArgIleArgIleLys : 88 |! !:!!:!!||| !! ||| !:!:.!.||| ! ! !! ! !! !! !:!:!:||| eSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLys 320 : CTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAA : 258 89 : LeuLeuGlyProLeuGlyPheSerLeuMetSerLeuPheLysTyrAlaValValIleIleArgS : 110 :!!||||||||||||.!! !!!!:!!.!.!!!:!!.!!!..|||.!!:!!:!!:!::!:||| IleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgA 257 : ATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGAC : 192 111 : erArgGluIleGluLysCysIleGlnAsnMetLeuAspAspTrpGlnGlnValAlaSerAspGl : 131 !!!:! |||.!. ! ! !:!!.!.:!!||| ! !||||||::! !..!... || rgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGl 191 : GTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaagga : 129 132 : uAspArgAspThrMetPheGluAsnAlaArgThrGlyArgValLeuThrMetValCysMetPhe : 152 | ::::::...|||.!.:!! !!|||!:! !.!!||| ! !.!!!!: !!||| !.!! uLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIle 128 : gaagaaagaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATC : 66 153 : LeuMetTyrGlyGlyGlyMetProTyr : 161 !!!!!::!!|||||| !:!: !||| PheIleHisGlyGlyIleLeuGlyTyr 65 : TTCATACACGGTGGTATACTTGGATAT : 37 vulgar: NvOr7 24 161 . LHQN01027980.1 444 36 - 183 M 18 54 G 1 0 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 37 444 183 - . gene_id 1 ; sequence NvOr7 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 37 444 . - . LHQN01027980.1 exonerate:protein2genome:local exon 37 444 . - . insertions 0 ; deletions 1 LHQN01027980.1 exonerate:protein2genome:local similarity 37 444 183 - . alignment_id 1 ; Query NvOr7 ; Align 445 25 54 ; Align 391 44 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 136 Query range: 299 -> 389 Target range: 4581 -> 4219 300 : GluTyrGluGlnArgGluSerIleAlaThrIleThrTyrPhePheLeuLeuMetSerPheVa : 320 |||!:: !:!!!!!!!::!! ! ! !.!!||||||.!! ! !|||:!::!! !!|| GluTrpThrGluSerAspAlaGlnMetLeuPheThrTyrIleValThrLeuValAlaValVa 4581 : GAATGGACAGAGAGTGATGCTCAAATGTTATTCACGTACATTGTAACACTCGTTGCTGTTGT : 4521 321 : lPheAsnIlePheIleLeuCysTyrIleGlyGlnValLeuThrGluLys >>>> Target : 337 | ||| |||::::::|||||||||.!!.!. !|||||||||:!! 9 lSerAsnThrPheLeuIleCysTyrIleSerAspArgLeuThrGluGln++ 4520 : TtctaatacatttttaatctGTTATATCAGCGACAGGTTGACAGAACAGgt........... : 4468 338 : Intron 1 >>>> CysGluSerIleAlaLysAlaAlaTyrThrThrLysTrpTyrGlnL : 352 2 bp ||| !!.!:!!!.!:!!!.!!.!|||! !||| ! |||||| ! | ++CysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrL 4467 : ..............agTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATC : 4333 353 : euThrGlyLysGluAlaArgSerIleValPheIleValSerCysAsnHisArgProValGlu : 372 || !! !!:!..! !! !..!:!!:!!.!.|||:!!!!! ! ::::!! ! !|||||| euProGlnArgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGlu 4332 : TGCCACAGAGAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAA : 4273 373 : LeuThrAlaGlyLysLeuLeuLysLeuSerLeuAsnSerPheSerSerIle : 389 :!!||||||||||||:::... :::|||||| !!!!!|||.!!..!:!! IleThrAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspVal 4272 : ATCACCGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTA : 4220 vulgar: NvOr7 299 389 . LHQN01027980.1 4581 4219 - 136 M 37 111 5 0 2 I 0 88 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4220 4581 136 - . gene_id 2 ; sequence NvOr7 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4581 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4581 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4220 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4220 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4220 4581 136 - . alignment_id 2 ; Query NvOr7 ; Align 4582 300 111 ; Align 4379 337 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 179 Query range: 12 -> 165 Target range: 474 -> 15 13 : ValSerAlaIleLysAsnAlaGlnGlyTyrAlaTyrAlaValGlnLeuThrArgTrpLeuLeuL : 34 |||!!!! !|||!!.! .!! .!! !! !|||::!:!!|||! !!.!|||||| !:!! ValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetL 474 : GTCACAGAAATCAATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGA : 411 35 : euProLeuGlyLeuTrpProThrLysSerIleIleTyrGlnLysIleLeuArgProValAlaIl : 55 ! !:!!||| !|||||| ! ||| ! ! !:!!!:!! !:!! !! !:!! !! ysSerIleGlyThrTrpProGlnPheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAs 410 : AAAGCATAGGCACATGGCCACAGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAA : 348 56 : eLeuLeuCysLeuPheIleMetLeuPheValIleIleProLeuCysLeuPheIlePheLeuVal : 76 !:!!:!!|||! ! ! !!!:|||||| !|||||||||! !! ||| !:!!.!.|||! ! nValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGlu 347 : CGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAA : 285 77 : ValLysAspLeuGlyIleArgLeuLysLeuIleGlyProLeuGlyPheGlyLeuMetSerLeuP : 98 ! ! !!!! !! !:!:!!|||:!!:!!|||||||||.!! ! !!:!!.!.!!!:!!. LysGlyThrPheTyrThrLysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleI 284 : AAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCA : 219 99 : heLysTyrValValValIleValLysGlnArgAspValAlaSerCysPheLeuGlyMetAlaVa : 119 !!!..|||..!:!!:!!:!::!!::!!::!:! !:!! ! !! ! !! ! !|||! !.. leSerTyrThrMetLeuLeuLeuArgArgLysThrIleHisHisPheValAsnHisMetGluTh 218 : TCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACATCACTTTGTCAATCATATGGAGAC : 156 120 : lAspTrpGlnGluLeuSerSerLeuSerAspArgLysValMetLeuArgAsnAlaLysThrGly : 140 !||||||::! ! !::: ... ::::::|||||||||!:! !!|||||| !.!! rAspTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSer 155 : CGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATGCTGAAGTACGCAAAATTTAGT : 93 141 : ArgLeuLeuThrIleIleCysValIlePheMetIlePheGlyGlyMetProTyrIleThrValL : 162 |||! ! !.!!|||.!!|||!.!||||||!!: ! !||| !:!: !||| !..!:!! ArgTyrAlaAlaIlePheCysAlaIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetT 92 : CGATACGCGGCGATTTTTTGTGCGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGA : 27 163 : euProLeuThr : 165 ! !!! !||| hrAlaSerThr 26 : CAGCGTCCACC : 16 vulgar: NvOr9 12 165 . LHQN01027980.1 474 15 - 179 M 153 459 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 16 474 179 - . gene_id 1 ; sequence NvOr9 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 16 474 . - . LHQN01027980.1 exonerate:protein2genome:local exon 16 474 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 16 474 179 - . alignment_id 1 ; Query NvOr9 ; Align 475 13 459 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr6 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 176 Query range: 15 -> 164 Target range: 444 -> 0 16 : AsnTyrAlaValLysLeuThrArgLeuLeuMetIleSerCysGlyIleTrpProAlaLysPheS : 37 :!!|||::!:!!:!!! !!.!|||! ! !|||! !||| |||! !|||||| :!!|||| AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpPro---GlnPheS 444 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCA---CAGTTCT : 384 38 : erThrSerPheGlnLysCysLeuArgProIleLeuIleIleIleCysPhePheIleMetPhePh : 58 ||:!!!:!.!!:!!!:! !:!! !! !||||||! !:!:||||||!:! ! !!!:.!.|| erSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPh 383 : CGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATT : 321 59 : eGlnLeuIleProPheCysLeuPheMetPheLeuIleIleLysAspMetArgIleArgLeuLys : 79 |..!:!!||||||! !! ||| !:!:.!.||| !! ! ! !.!. !! !:!:!!||| eSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLys 320 : CTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAA : 258 80 : LeuLeuGlyProLeuGlyPheSerLeuThrSerLeuPheLysTyrValValValValIleLysA : 101 :!!||||||||||||.!! !!!!:!! !!!!:!!.!!!..|||..!:!!:!!:!!:!:::!. IleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgA 257 : ATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGAC : 192 102 : snArgGluIleAlaLysCysValGlnIleMetValAspAspTrpHisGlnLeuAsnSerThrGl : 122 .!!:! ||| ! ! ! !|||.!. !|||! ! !||||||... ! !... || rgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGl 191 : GTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaagga : 129 123 : uAspArgLysAlaMetLeuIleAsnAlaLysThrGlyArgValLeuThrMetValCysMetPhe : 143 | ::::::...||||||! !!|||||| !.!!||| ! !.!!!!: !!||| !.!! uLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIle 128 : gaagaaagaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGATC : 66 144 : LeuMetTyrGlyGlyGlyMetProTyrValThrIleValProLeuThrLysGlyValThrMet : 164 !!!!!::!!|||||| !:!: !||| !..!!!:..! !!! !|||! ! !|||..!:!! PheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaSerThrThrMetValValVal 65 : TTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTG : 1 vulgar: NvOr6 15 164 . LHQN01027980.1 444 0 - 176 M 18 54 G 1 0 M 130 390 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1 444 176 - . gene_id 1 ; sequence NvOr6 ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 1 444 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1 444 . - . insertions 0 ; deletions 1 LHQN01027980.1 exonerate:protein2genome:local similarity 1 444 176 - . alignment_id 1 ; Query NvOr6 ; Align 445 16 54 ; Align 391 35 390 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 168 Query range: 22 -> 138 Target range: 375 -> 36 23 : LeuHisLysPheLeuAsnLeuLeuLeuIleValIleThrTyrLeuLeuIleMetPheIleLeuV : 44 |||.!.!:! !:!!::!! !:!!|||! !|||||| !||| ! !|||:!:||| :!!: LeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleI 375 : CTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAA : 312 45 : alProCysAlaLeuHisThrPheIleGluGluProAsnMetAlaIleLysMetLysLeuIleGl : 65 !!||||||:!!|||||| !.!.:!:|||:!! !!.!.!. !! |||:!!|||:!!:!!|| leProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGl 311 : TCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGG : 249 66 : yProMetSerPheAlaLeuMetAlaValThrLysTyrAlaSerLeuThrGlnArgThrAlaGlu : 86 ||||:!!||| ! !:!!.!...!:!!! !!..|||.!!! !||| !! !||| ! ! yProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThr 248 : TCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACC : 186 87 : IleAlaGlnCysPheArgHisValGluGluAspTrpGluAsnGlyCysAlaMetGluLysLysA : 108 ||| !!!.! ! !!!.!|||:!!||| ||||||..!!.. ! |||||||||. IleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysG 185 : ATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaag : 120 109 : rgValValAlaValIleTyrArgHisAlaLysIleGlyArgSerLeuSerIlePheSerGlyIl : 129 .. |||!!: !:!:!!||||||.!!.!!|||! ! !:!!||||||!!!!.!|| lu---------ValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIl 119 : aa---------gtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATTTTTTGTGCGAT : 66 130 : ePheMetTyrGlyGlyGlyIlePheTyr : 138 ||||!!::!!|||||| !:!! ||| ePheIleHisGlyGlyIleLeuGlyTyr 65 : CTTCATACACGGTGGTATACTTGGATAT : 37 vulgar: NvOr4PSE 22 138 . LHQN01027980.1 375 36 - 168 M 86 258 G 3 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 37 375 168 - . gene_id 1 ; sequence NvOr4PSE ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 37 375 . - . LHQN01027980.1 exonerate:protein2genome:local exon 37 375 . - . insertions 0 ; deletions 3 LHQN01027980.1 exonerate:protein2genome:local similarity 37 375 168 - . alignment_id 1 ; Query NvOr4PSE ; Align 376 23 258 ; Align 118 112 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 333 -> 401 Target range: 1990 -> 1709 334 : GlnCysThrArgValGlySerIleTyrHisThrIleAspTrpTyrAsnLeuProGlyLysSe : 354 :!! !|||!:!||||||.!!! ! :!!! !! !!!:||||||...||| !! !|||!! GluThrThrLysValGlyGlyLysValTyrMetThrGluTrpTyrArgLeuSerGlnLysTh 1990 : GAGACTACCAAAGTCGGAGGAAAAGTGTACATGACCGAATGGTACCGGTTGTCTCAAAAAAC : 1930 355 : rAlaSerAspLeuPhePheIleIleAlaValSerArgTyrProAlaLysLeuThrAlaGlyL : 375 !||| !! !!!! ! .!.||||||:!! !|||!!! ! !|||:!!|||||||||| rAlaLeuGlyPheValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyL 1929 : TGCTCTCGGTTTTGTAATGATCATCTCCAGATCGAGCATGGTGATAAAAATCACCGCTGGAA : 1867 376 : ysPheVal<-><->AspLeuArgLeuValThrPheSerAsn >>>> Target Intron : 387 |||||||| ! ! !:!!!.!||||||.!!:!! 71 bp ysPheValTyr***ThrSerSerValAlaThrPheGlyAsp++ 1866 : AATTCGTATACTGAACATCGTCTGTCGCAACATTTGGCGATgt................... : 1823 388 : 1 >>>> ValMetLysSerAlaPheThrTyrPheAsnLeuIleArgIleVal : 401 |||.!.|||:!!:!!|||.!!|||||||||:!!||||||! !||| ++ValPheLysAlaSerPheAlaTyrPheAsnMetIleArgThrVal 1822 : ......agGTATTTAAAGCGTCTTTCGCCTACTTCAACATGATCCGCACAGTT : 1710 vulgar: NvOr4PSE 333 401 . LHQN01027980.1 1990 1709 - 105 M 44 132 G 0 6 M 9 27 5 0 2 I 0 67 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 1710 1990 105 - . gene_id 2 ; sequence NvOr4PSE ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 1826 1990 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1826 1990 . - . insertions 6 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 1824 1825 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 1755 1825 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 1755 1756 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 1710 1754 . - . LHQN01027980.1 exonerate:protein2genome:local exon 1710 1754 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 1710 1990 105 - . alignment_id 2 ; Query NvOr4PSE ; Align 1991 334 132 ; Align 1853 378 27 ; Align 1755 387 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr7 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 205 Query range: 24 -> 237 Target range: 1073 -> 431 25 : AspTyrAlaValGlnLeuThrArgLeuLeuLeuMetProCysGlyIleTrpProAlaLysPh : 45 ||||||::!:!!|||! !!.!|||! ! !:!!! ! ||| !|||||| :!!! AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpPro---GlnSe 1073 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCA---CAGTC : 1016 46 : eSerSerArgValGlnArgPheLeuArgProPheLeuIleValAlaCysCysPheValMetL : 66 !||||||!.!:!!:!!|||.!!:!! !! !.!.|||! !||| !|||! ! !!.!:!:| rSerSerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValL 1015 : CTCGTCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTAC : 953 67 : euPheLeuLeuValProValCysLeuPheMetPheLeuIleValArgAspValArgIleArg : 86 ||||| !:!!:!!||| !! ||| !:!:.!.||| ! !..! ! !! !! !:! euPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLys 952 : TATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAA : 893 87 : IleLysLeuLeuGlyProLeuGlyPheSerLeuMetSerLeuPheLysTyrAlaValValIl : 107 :!:|||:!!||||||||||||.!! !!!!:!!.!.!!!:!!.!!!..|||.!!:!!:!!:! ValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLe 892 : GTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTT : 830 108 : eIleArgSerArgGluIleGluLysCysIleGlnAsnMetLeuAspAspTrpGlnGlnValA : 128 ::!:||| !!!:! |||... ! ! !.!!.!.:!!||| ! !||||||::! !..! uLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrM 829 : GCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGA : 767 129 : laSerAspGluAspArgAspThrMetPheGluAsnAlaArgThrGlyArgValLeuThrMet : 148 ||| :::::: |||.!.:!! !!|||!:! !.!!||| ! !.!!!!: etArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIle 766 : tgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATT : 707 149 : ValCysMetPheLeuMetTyrGlyGlyGlyMetProTyrValThrIleValProLeuAlaLy : 169 !|||! !.!!!!!!!::!!|||||| !:!: !||| !..!!!:..! !!!!!.!!! SerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrTh 706 : TCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCAC : 644 170 : sGlyAlaThrMetValGlyAsn<-><->ValSerTyrArgAlaLeuAlaTyrProSerTyrP : 188 ! !!.!..!:!!||||||||| :!!! !! |||!.!||| !!! |||! !||| rMetValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrL 643 : GATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACA : 581 189 : heIlePhePheAsnProTyrIleArgProValTyrAspValValPheLeuThrGlnCysLeu : 208 .!!.!! ! !!! !.! !!:!! !!!!::!!|||.!!|||:!!|||! !||| ysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeu 580 : AAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTC : 521 209 : CysGlyPheThrArgTyrThrIleThrCysGlyValTyrSerValValIleIleCysValMe : 229 ! !||||||! ! ! !!|||! !.!! !.!!||| |||:!!..!! ! ! ..! SerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSe 520 : TCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATC : 458 230 : tHisIleCysSerArgIleThrVal : 237 ||| ! !.!!!:!:!: !||| rHisAlaSerGlyGlnLeuGlyVal 457 : ACACGCGTCTGGCCAGTTGGGCGTG : 432 vulgar: NvOr7 24 237 . LHQN01028641.1 1073 431 - 205 M 18 54 G 1 0 M 133 399 G 0 6 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 432 1073 205 - . gene_id 1 ; sequence NvOr7 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 432 1073 . - . LHQN01028641.1 exonerate:protein2genome:local exon 432 1073 . - . insertions 6 ; deletions 1 LHQN01028641.1 exonerate:protein2genome:local similarity 432 1073 205 - . alignment_id 1 ; Query NvOr7 ; Align 1074 25 54 ; Align 1020 44 399 ; Align 615 177 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr6 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 197 Query range: 15 -> 243 Target range: 1073 -> 386 16 : AsnTyrAlaValLysLeuThrArgLeuLeuMetIleSerCysGlyIleTrpProAlaLysPh : 36 :!!|||::!:!!:!!! !!.!|||! ! !|||! !||| ||| !|||||| :!!! AspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpPro---GlnSe 1073 : GATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCA---CAGTC : 1016 37 : eSerThrSerPheGlnLysCysLeuArgProIleLeuIleIleIleCysPhePheIleMetP : 57 !|||:!!!:!.!!:!!!:! !:!! !! !||||||! !:!:||||||!:! ! !:!:. rSerSerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValL 1015 : CTCGTCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTAC : 953 58 : hePheGlnLeuIleProPheCysLeuPheMetPheLeuIleIleLysAspMetArgIleArg : 77 !.||| !:!!||||||! !! ||| !:!:.!.||| !! !:!! !.!. !! !:! euPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLys 952 : TATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAA : 893 78 : LeuLysLeuLeuGlyProLeuGlyPheSerLeuThrSerLeuPheLysTyrValValValVa : 98 :!!|||:!!||||||||||||.!! !!!!:!! !!!!:!!.!!!..|||..!:!!:!!:! ValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLe 892 : GTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTT : 830 99 : lIleLysAsnArgGluIleAlaLysCysValGlnIleMetValAspAspTrpHisGlnLeuA : 119 !:!:::!..!!:! ||| ! ! ! ! !!.!. !|||! ! !||||||... ! !! uLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrM 829 : GCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGA : 767 120 : snSerThrGluAspArgLysAlaMetLeuIleAsnAlaLysThrGlyArgValLeuThrMet : 139 ||| :::::: ||||||! !!|||||| !.!!||| ! !.!!!!: etArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIle 766 : tgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATT : 707 140 : ValCysMetPheLeuMetTyrGlyGlyGlyMetProTyrValThrIleValProLeuThrLy : 160 !|||! !.!!!!!!!::!!|||||| !:!: !||| !..!!!:..! !!!!!|||! SerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrTh 706 : TCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCAC : 644 161 : sGlyValThrMetValGlyAsn<-><->ValSerTyrArgHisLeuAlaTyrProSerTyrT : 179 ! !|||..!:!!||||||||| :!!! !! ||| ||| !!! |||! !||| rMetValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrL 643 : GATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACA : 581 180 : yrIlePhePheAsnProHisValArgProIleTyrAspValIlePheAlaThrHisCysIle : 199 ! .!!.!! ! !!..!!.! !!!!: !!!!::!!:!!.!! !:!!!!.! !:!! ysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeuSerGlnPheLeu 580 : AAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTGTCACAGTTTCTC : 521 200 : CysGlyPheThrArgTyrThrIleThrCysAlaValTyrSerIleValIleIleCysValMe : 220 ! !||||||! ! ! !!|||! !.!! !::!||| |||:!!..!! ! ! ..! SerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSe 520 : TCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATC : 458 221 : tHisIleCysSerArgIleAlaIleThrSerSerMetLeuGlnArgLeuAlaAspAspSerA : 241 ||| ! !.!!!:!:!:!.!:!:..!! !! ! !:!!:!! !!!!!.!..!|||:!! rHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspAlaA 457 : ACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATGCGA : 395 242 : spGlyArg : 243 !!||| rgArgArg 394 : GACGCAGA : 387 vulgar: NvOr6 15 243 . LHQN01028641.1 1073 386 - 197 M 18 54 G 1 0 M 133 399 G 0 6 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 387 1073 197 - . gene_id 1 ; sequence NvOr6 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 387 1073 . - . LHQN01028641.1 exonerate:protein2genome:local exon 387 1073 . - . insertions 6 ; deletions 1 LHQN01028641.1 exonerate:protein2genome:local similarity 387 1073 197 - . alignment_id 1 ; Query NvOr6 ; Align 1074 16 54 ; Align 1020 35 399 ; Align 615 168 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 217 Query range: 12 -> 245 Target range: 1103 -> 398 13 : ValSerAlaIleLysAsnAlaGlnGlyTyrAlaTyrAlaValGlnLeuThrArgTrpLeuLe : 33 |||!!!! !|||!!.! .!! .!! !! !|||::!:!!|||! !!.!|||||| !:! ValThrGluIleAsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMe 1103 : GTCACAGAAATCAATATAACTGCTAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGAT : 1043 34 : uLeuProLeuGlyLeuTrpProThrLysSerIleIleTyrGlnLysIleLeuArgProValA : 54 ! ! !:!!||| !|||||| !...||| ! ! !:!!!:!|||:!! !! !:!! tLysSerIleGlyAlaTrpProGlnSerSerSerAsnLeuGluArgIleIleSerArgIleL 1042 : GAAAAGCATAGGCGCATGGCCACAGTCCTCGTCGAATCTCGAGAGAATCATCTCTCGAATAT : 980 55 : laIleLeuLeuCysLeuPheIleMetLeuPheValIleIleProLeuCysLeuPheIlePhe : 74 !! !:!!:!!|||! ! ! !:!:||||||..!|||||||||! !! ||| !:!!.!. euAsnValIleCysTyrThrAlaValLeuPheThrIleIleProCysSerLeuHisValMet 979 : TGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATCCCTTGTTCGCTGCACGTAATG : 920 75 : LeuValValLysAspLeuGlyIleArgLeuLysLeuIleGlyProLeuGlyPheGlyLeuMe : 95 |||! ! !:!! !!!! !! !:!:!!|||:!!:!!|||||||||.!! ! !!:!!.! LeuGluLysGluThrPheTyrThrLysValLysIleLeuGlyProLeuSerHisTrpValPh 919 : CTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTT : 857 96 : tSerLeuPheLysTyrValValValIleValLysGlnArgAspValAlaSerCysPheLeuG : 116 .!!!:!!.!!!..|||..!:!!:!!:!::!!::!!::!:! !:!! ! !! !||| ! eCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnH 856 : CTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATC : 794 117 : lyMetAlaValAspTrpGlnGluLeuSerSerLeuSerAspArgLysValMetLeuArgAsn : 136 !|||! !..!||||||::! ! !! ... :::::::::||||||!:! !! isMetGluThrAspTrpArgThrThrMetArgLysGluLysLysGluIleMetLeuLysTyr 793 : ATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaagaaagaaataatgcTGAAGTAC : 734 137 : AlaLysThrGlyArgLeuLeuThrIleIleCysValIlePheMetIlePheGlyGlyMetPr : 157 |||||| !.!!|||! ! !.!!||| !|||..!||||||!!: ! !||| !:!: AlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGl 733 : GCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGG : 671 158 : oTyrIleThrValLeuProLeuThrLysGlyProIleMetArgGlyAsn<-><->ValSerL : 176 !||| !..!:!! ! !!!!!|||! ! ! !:!!:!! !|||||| :!!! !| yTyrCysValMetThrAlaPheThrThrMetValValValValGlyAsnGluThrMetIleL 670 : ATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTGGAAACGAGACTATGATCT : 608 177 : euArgProLeuAlaTyrProSerTyrPheValPhePheAsnProGlnIleArgProIleTrp : 196 ||||| !||| !!! |||! !||| ! !.!!.!! !.!.! !.! !!!!: euArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsn 607 : TGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAAC : 548 197 : AspTyrValPheValThrHisCysMetCysGlyLeuValArgTyrSerValThrCysGlyVa : 217 !!: !|||.!!:!!:!!!!.! !:!:! !|||!!!:!! ! !!!!! !.!! !.!!|| GluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAsnThrSerAlaIleSerVa 547 : GAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGT : 485 218 : lTyrSerIleAlaIleLeuCysIleMetHisIleCysSerGlnIleThrIleThrSerSerM : 238 | |||:!!.!!! ! ! ! ! ||| ! !.!!|||:!: !:!:..!! !! ! lIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuGlyValValMetLeuS 484 : TATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGT : 422 239 : etLeuAspArgLeuValGluAsn : 245 !:!!!!: !!!!|||...:!! erIleGluAspPheValSerAsp 421 : CGATCGAAGATTTTGTGAGTGAT : 399 vulgar: NvOr9 12 245 . LHQN01028641.1 1103 398 - 217 M 161 483 G 0 6 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 399 1103 217 - . gene_id 1 ; sequence NvOr9 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 399 1103 . - . LHQN01028641.1 exonerate:protein2genome:local exon 399 1103 . - . insertions 6 ; deletions 0 LHQN01028641.1 exonerate:protein2genome:local similarity 399 1103 217 - . alignment_id 1 ; Query NvOr9 ; Align 1104 13 483 ; Align 615 174 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 174 Query range: 17 -> 138 Target range: 1019 -> 665 18 : ArgSerGlnAlaTyrLeuHisLysPheLeuAsnLeuLeuLeuIleValIleThrTyrLeuLe : 38 !:!|||..!:!! !!|||.!.!:!.!!:!!::!! !:!!|||! !|||||| !||| ! GlnSerSerSerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAl 1019 : CAGTCCTCGTCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGC : 959 39 : uIleMetPheIleLeuValProCysAlaLeuHisThrPheIleGluGluProAsnMetAlaI : 59 !:!!:!:|||! :!!:!!||||||:!!||||||..!.!.:!:|||:!! !!.!.!. !! aValLeuPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrT 958 : AGTACTATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACA : 896 60 : leLysMetLysLeuIleGlyProMetSerPheAlaLeuMetAlaValThrLysTyrAlaSer : 79 |||:!!|||:!!:!!||||||:!!||| ! !:!!.!...!:!!! !!..|||.!!! ! hrLysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMet 895 : CGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATG : 836 80 : LeuThrGlnArgThrAlaGluIleAlaGlnCysPheArgHisValGluGluAspTrpGluAs : 100 ||| !! !||| ! ! ||| !!!.! !|||!.!|||:!!||| ||||||..!!. LeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgTh 835 : CTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAAC : 773 101 : nGlyCysAlaMetGluLysLysArgValValAlaValIleTyrArgHisAlaLysIleGlyA : 121 . ! |||||||||... :::::: !:!:!!||||||.!!.!!| rThrMetArgLysGluLysLysGlu---------IleMetLeuLysTyrAlaLysPheSerA 772 : GACGAtgagaaaggagaagaaagaa---------ataatgcTGAAGTACGCGAAATTTAGTC : 719 122 : rgSerLeuSerIlePheSerGlyIlePheMetTyrGlyGlyGlyIlePheTyr : 138 ||! ! !:!!|||! !!!! !||||||!!::!!|||||| !:!! ||| rgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyr 718 : GATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATAT : 666 vulgar: NvOr4PSE 17 138 . LHQN01028641.1 1019 665 - 174 M 91 273 G 3 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 666 1019 174 - . gene_id 1 ; sequence NvOr4PSE ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 666 1019 . - . LHQN01028641.1 exonerate:protein2genome:local exon 666 1019 . - . insertions 0 ; deletions 3 LHQN01028641.1 exonerate:protein2genome:local similarity 666 1019 174 - . alignment_id 1 ; Query NvOr4PSE ; Align 1020 18 273 ; Align 747 112 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr3 Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 203 Query range: 66 -> 271 Target range: 992 -> 380 67 : ValLysThrLeuLysAsnAlaAlaValTyrIleLeuLeuSerPheLeuLeuValProGlyIleL : 88 :!!... !:!! !|||!.! ! !|||! ! !:!! !||| !:!!:!!||| !! | IleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheThrIleIleProCysSerL 992 : ATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCACGATAATCCCTTGTTCGC : 929 89 : euHisIleValValGluGluGlyLysLeuLysAlaLysIleLeuLysThrGlyProMetIleLe : 109 |||||:!!:!!:!!|||:!!! !! !!! ! .!!|||:!: !! ! !||||||:!!! !! euHisValMetLeuGluLysGluThrPheTyrThrLysValLysIleLeuGlyProLeuSerHi 928 : TGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCA : 866 110 : uAsnThrMetAlaLeuLeuLysTyrSerValMetLeuPheArgLysSerGlnIleGlnGluCys : 130 ! ..!.!...!:!!:!!!..|||!!!:!!:!!|||.!.|||:::!.! |||!::.!.! ! sTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhe 865 : CTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTT : 803 131 : LeuLysGlnLeuGluSerAspTrpArgLysAlaGlyAsnAspGluLeuArgAlaLeuMetArgA : 152 !!!!!.!!.:!!|||!!!|||||||||! !.!! ... ||| ::: :::||| !! PheAsnHisMetGluThrAspTrpArgThrThrMetArgLysGluLysLysGluIleMetLeuL 802 : TTCAATCATATGGAGACCGATTGGAGAACGACGAtgagaaaggagaagaaagaaataatgcTGA : 737 153 : rgAsnThrAlaValGlyHisArgLeuSerArgValCysValAlaThrPheTyrValGlyGlyIl : 173 :! !!.!! ! !!.!!!.. ! !:!!! ! !|||..! ! !.!.:!!! !||| !:! ysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLe 736 : AGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACT : 674 174 : ePheTyrArgLeuIleLysThrLeuLeuThrProIleArgTyrThr<->LysAspGlyLeuMet : 193 ! ||| !!:!!!!:! !.!!!!! !||| !:!! ! ..! !!.!!: !:!!!!: uGlyTyrCysValMetThrAlaPheThrThrMetValValValValGlyAsnGluThrMetIle 673 : TGGATATTGTGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTGGAAACGAGACTATGATC : 611 194 : IleLysProLeuProSerProLeuTyrLysGlyLeuPheArgPheAsnThrSerAlaSerProV : 215 :!:::: !||||||! !|||:!!||||||||||||.!!! ! !!:!!|||!:!.!! : LeuArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThr------M 610 : TTGCGCGTGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACT------A : 551 216 : alTyrGluThrIlePheAlaThrGlnMetMetSerGlyPheValValHisSerThrThrValTh : 236 !! !!|||! !:!!.!! !:!!|||.!.:!:|||||||||:!!!.!:!!!!!!:!.!!:!!!: etAsnGluIleValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAsnThrSerAlaIleSe 550 : TGAACGAGATCGTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAACACCAGTGCGATCAG : 488 237 : rThrCysSerTyrAlaValLeuLeuAlaThrHisAlaCysGlyGlnLeuAspIleValValTyr : 257 !..! ||| !.!! ! !|||.!!:!!||||||! !|||||||||! !:!:|||:!!! rValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuGlyValValMetLeu 487 : TGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTG : 425 258 : LeuLeuLysArgLeuIleGluAspAspGlyAspAsnGlyArg : 271 ! !:!!:!! !!!!:!:...|||! !! !!..|||!:! SerIleGluAspPheValSerAspAlaArgArgArgGlyLys 424 : TCGATCGAAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAG : 381 vulgar: NvOr3 66 271 . LHQN01028641.1 992 380 - 203 M 122 366 G 0 3 M 24 72 G 2 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 381 992 203 - . gene_id 1 ; sequence NvOr3 ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 381 992 . - . LHQN01028641.1 exonerate:protein2genome:local exon 381 992 . - . insertions 3 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local similarity 381 992 203 - . alignment_id 1 ; Query NvOr3 ; Align 993 67 366 ; Align 624 189 72 ; Align 552 215 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr4PSE Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 22 -> 138 Target range: 495 -> 834 23 : LeuHisLysPheLeuAsnLeuLeuLeuIleValIleThrTyrLeuLeuIleMetPheIleLeuV : 44 |||.!.!:! !:!!::!! !:!!|||! !|||||| !||| ! !|||:!:||| :!!: LeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleI 496 : CTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAA : 559 45 : alProCysAlaLeuHisThrPheIleGluGluProAsnMetAlaIleLysMetLysLeuIleGl : 65 !!||||||:!!|||||| !.!.:!:|||:!! !!.!.!. !! |||:!!|||:!!:!!|| leProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGl 560 : TCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGG : 622 66 : yProMetSerPheAlaLeuMetAlaValThrLysTyrAlaSerLeuThrGlnArgThrAlaGlu : 86 | !!:!!||| ! !:!!.!...!:!!! !!..|||.!!! !||| !! !||| ! ! ySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThr 623 : TTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACC : 685 87 : IleAlaGlnCysPheArgHisValGluGluAspTrpGluAsnGlyCysAlaMetGluLysLysA : 108 ||| !!!.! ! !!!.!|||:!!||| ||||||..!!.. ! |||||||||. IleHisHisPheValAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysG 686 : ATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaag : 751 109 : rgValValAlaValIleTyrArgHisAlaLysIleGlyArgSerLeuSerIlePheSerGlyIl : 129 .. |||!!:! !:!:!!||||||.!!.!!|||! ! !:!!||||||!!!!.!|| lu---------ValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIlePheCysAlaIl 752 : aa---------gtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTTTTGTGCGAT : 805 130 : ePheMetTyrGlyGlyGlyIlePheTyr : 138 ||||!!::!!|||||| !:!! ||| ePheIleHisGlyGlyIleLeuGlyTyr 806 : TTTCATACACGGTGGTATACTTGGATAT : 834 vulgar: NvOr4PSE 22 138 . LHQN01028951.1 495 834 + 160 M 86 258 G 3 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 496 834 160 + . gene_id 1 ; sequence NvOr4PSE ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 496 834 . + . LHQN01028951.1 exonerate:protein2genome:local exon 496 834 . + . insertions 0 ; deletions 3 LHQN01028951.1 exonerate:protein2genome:local similarity 496 834 160 + . alignment_id 1 ; Query NvOr4PSE ; Align 496 23 258 ; Align 754 112 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr9 Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 334 -> 400 Target range: 827 -> 1194 335 : GluSerIleGlyThrThrAlaTyrMetIleArgTrpTyrHisLeuSerGlyLysGluAlaAr : 355 :!! !||||||!.!||||||||| .!!! !|||||| !!||| !!..!! |||::!!: GlnLeuIleGlyAsnThrAlaTyrGluPheLeuTrpTyrAspLeuArgSerThrGluSerGl 828 : CAACTAATCGGCAATACGGCGTATGAATTTCTTTGGTACGATTTACGTTCAACTGAAAGCCA : 888 356 : gAsnValValLeuIleIleAlaSerThrGlnArgProValValMetThrAlaGlyLysMetV : 376 ! !:!!:!!! !:!!||| !!!!:!!|||!:! ! !!..!...||| ||||||... nLeuLeuIleProValIleLeuArgSerGlnLysGlyPheThrPheThrPheGlyLysPheS 889 : ACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGGTTTCACATttacttttggaaaatttt : 951 377 : alAsnLeuSerLeuGlnSerPheThrAsn >>>> Target Intron 1 >>>> ValI : 387 :::|||||||||:!!||||||||| ! 169 bp :!!! erSerLeuSerLeuGluSerPheThrAla++ ++IleM 952 : caagtctCTCCTTGGAAAGCTTTACGGCCgt.........................agATCA : 1153 388 : leLysAlaSerAlaSerTyrLeuAsnMetLeuArgThrVal : 400 !:|||!.!||||||||||||:!!::::!:|||! !.!!||| etLysValSerAlaSerTyrIleSerValLeuLeuAlaVal 1154 : TGAAAGTCTCAGCATCATATATATCAGTACTTCTTGCAGTG : 1194 vulgar: NvOr9 334 400 . LHQN01050112.1 827 1194 + 119 M 51 153 5 0 2 I 0 165 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 828 1194 119 + . gene_id 1 ; sequence NvOr9 ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 828 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 828 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1194 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1194 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 828 1194 119 + . alignment_id 1 ; Query NvOr9 ; Align 828 335 153 ; Align 1150 386 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr12 Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 328 -> 408 Target range: 797 -> 1206 329 : TyrIleAlaGluIleLeuArgIleGluSerMetGluIleGlyAsnAlaAlaTyrHisCysAs : 349 |||::: !!!!||| ! !!|||... !|||||||||.!!||||||.!.! ! TyrLeuLysCysCysPheArgHis***SerGlnLeuIleGlyAsnThrAlaTyrGluPheLe 798 : tatttaaaatgttGCTTTCGTCATTAGAGCCAACTAATCGGCAATACGGCGTATGAATTTCT : 858 350 : pTrpTyrAspLeuSerAlaPheGluArgArgLeuPheIleLeuThrIleIleArgSerLysT : 370 !|||||||||||| !!:!! !|||!!!!:!|||.!.|||! !..!|||:!:||||||:!!! uTrpTyrAspLeuArgSerThrGluSerGlnLeuLeuIleProValIleLeuArgSerGlnL 859 : TTGGTACGATTTACGTTCAACTGAAAGCCAACTTCTAATACCTGTAATATTGAGGTCTCAAA : 921 371 : hrProPheGluIleThrAlaGlyLysPheAlaAlaPheSerLeuGluPheTyrCysSer > : 390 ! !||| !...||| |||||||||::::::..!||||||||| !!:! :!! ysGlyPheThrPheThrPheGlyLysPheSerSerLeuSerLeuGluSerPheThrAla++ 922 : AGGGTTTCACATttacttttggaaaattttcaagtctCTCCTTGGAAAGCTTTACGGCCgt. : 983 391 : >>> Target Intron 1 >>>> IleLeuLysThrSerGlyGlyTyrLeuSerValLeu : 401 169 bp |||:!!|||..!|||!.!..!|||:!!||||||||| ++IleMetLysValSerAlaSerTyrIleSerValLeu 984 : ........................agATCATGAAAGTCTCAGCATCATATATATCAGTACTT : 1183 402 : LeuAlaValGlnAspArgLeu : 408 ||||||||| ! |||:!! LeuAlaValTyr***ArgIle 1184 : CTTGCAGTGTATTGAAGAATC : 1206 vulgar: NvOr12 328 408 . LHQN01050112.1 797 1206 + 148 M 61 183 5 0 2 I 0 165 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 798 1206 148 + . gene_id 1 ; sequence NvOr12 ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 798 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 798 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1206 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1206 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 798 1206 148 + . alignment_id 1 ; Query NvOr12 ; Align 798 329 183 ; Align 1150 390 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr16 Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 326 -> 408 Target range: 797 -> 1212 327 : TyrIleAlaGluIleLeuArgThrGluSerThrGluIleGlyAsnAlaAlaTyrGluCysAs : 347 |||::: !!!!||| ! !!||| ! !|||||||||.!!|||||||||! ! TyrLeuLysCysCysPheArgHis***SerGlnLeuIleGlyAsnThrAlaTyrGluPheLe 798 : tatttaaaatgttGCTTTCGTCATTAGAGCCAACTAATCGGCAATACGGCGTATGAATTTCT : 858 348 : nTrpTyrAspLeuProAlaCysGluThrArgLeuPheIleLeuThrMetIleArgSerLysT : 368 !||||||||||||! !:!! !|||!:!!:!|||.!.|||! !..!!!::!:||||||:!!! uTrpTyrAspLeuArgSerThrGluSerGlnLeuLeuIleProValIleLeuArgSerGlnL 859 : TTGGTACGATTTACGTTCAACTGAAAGCCAACTTCTAATACCTGTAATATTGAGGTCTCAAA : 921 369 : hrProPheGluIleThrAlaGlyLysPheThrAlaPheSerLeuGlnLeuTyrCysSer > : 388 ! !||| !...||| |||||||||::::::..!||||||:!! !!:! :!! ysGlyPheThrPheThrPheGlyLysPheSerSerLeuSerLeuGluSerPheThrAla++ 922 : AGGGTTTCACATttacttttggaaaattttcaagtctCTCCTTGGAAAGCTTTACGGCCgt. : 983 389 : >>> Target Intron 1 >>>> IleLeuLysThrSerGlyGlyTyrLeuSerMetLeu : 399 169 bp |||:!!|||..!|||!.!..!|||:!!|||:!:||| ++IleMetLysValSerAlaSerTyrIleSerValLeu 984 : ........................agATCATGAAAGTCTCAGCATCATATATATCAGTACTT : 1183 400 : LeuAlaValLysGluArgLeuAlaLeu : 408 ||||||||| ! !|||:!! !||| LeuAlaValTyr***ArgIleLysLeu 1184 : CTTGCAGTGTATTGAAGAATCAAGTTA : 1212 vulgar: NvOr16 326 408 . LHQN01050112.1 797 1212 + 149 M 61 183 5 0 2 I 0 165 3 0 2 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 798 1212 149 + . gene_id 1 ; sequence NvOr16 ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 798 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 798 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1212 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1212 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 798 1212 149 + . alignment_id 1 ; Query NvOr16 ; Align 798 327 183 ; Align 1150 388 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr18NTE Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 314 -> 377 Target range: 1306766 -> 1306574 315 : PheSerLeuPheValTyrCysTyrValAlaGluValLeuArgThrGluSerMetGl : 333 !!...!|||!!.:!!!::|||! !!.!|||:!!||| ! !||||||:!:|| LeuGlnLeuLeuLeuTrpCysLeuProGlyGluIleLeuValGlnGluSerLeuGl 1306766 : TTGCAACTTTTGTTATGGTGTTTGCCCGGTGAAATTCTCGTTCAAGAGAGTTTAGA : 1306712 334 : uIleGlyAsnAlaAlaTyr<->GlnCysAsnTrpTyrThrLeuProProSerGluA : 351 |||||||:!!!.!!.!||| .!. ||||||!.!|||||||||! ! ! uIleGlyHisValValTyrLeuAsnValProTrpTyrAsnLeuProProIleTyrG 1306711 : AATAGGACACGTAGTCTACTTAAATGTACCATGGTACAATTTGCCGCCAATTTACC : 1306655 352 : laLysCysLeuThrLeuIleMetIleArgAlaLysGlnProPheGluIleThrAla : 369 !!:! ||| !:!!!!:!!::!!||||||:!!||| !! !...||||||||| lnArgLysLeuCysMetMetIleLeuArgAlaGlnGlnTyrCysSerIleThrAla 1306654 : AGAGAAAACTTTGCATGATGATCCTTAGGGCACAACAATATTGCAGCATCACGGCA : 1306601 370 : GlyLysPheAlaAlaPheSerLeu : 377 !! !||| !.!!!!.|||:!! LeuThrPheArgThrLeuSerIle 1306600 : TTAACGTTTCGAACGTTGTCTATT : 1306575 vulgar: NvOr18NTE 314 377 . KQ414608.1 1306766 1306574 - 102 M 25 75 G 0 3 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1306575 1306766 102 - . gene_id 1 ; sequence NvOr18NTE ; gene_orientation . KQ414608.1 exonerate:protein2genome:local cds 1306575 1306766 . - . KQ414608.1 exonerate:protein2genome:local exon 1306575 1306766 . - . insertions 3 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1306575 1306766 102 - . alignment_id 1 ; Query NvOr18NTE ; Align 1306767 315 75 ; Align 1306689 340 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr20 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 95 -> 234 Target range: 203813 -> 204218 96 : IleLeuArgGlnLeuIleValSerValSerGlyAspTrpLysHisThrThrLysLysS : 115 :!!||| !! !|||:!! !! !:!!:!!! !|||||| ! ! !! !! ! ! ! ValLeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspP 203814 : GTTCTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATT : 203871 116 : erGluLeuGlnValMetTrpArgAsnAlaArgIleSerArgThrPheSerIleLeuPh : 134 !||| !.!.|||||| !:!....!!||||||!!!|||.!! !||||||||| heGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSe 203872 : TCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAG : 203928 135 : eIleGlyLeuAlaGluValThrValLeuAlaAsnThrAlaArgMetPheTyrIleLeu : 153 ! !!.!||| ! ..!.!!|||:!! !! ! !!.!! ! ! !:!! rTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIle 203929 : TTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATT : 203985 154 : TyrSerThrArgSerGluAlaGluSerSerGlyIleLysAsnTyrLysLysProLeuT : 173 !!!!! ! ! ! ! !|||!!!!:! !! !||| !!:! ! !||| | ThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrT 203986 : ACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaactt : 204045 174 : yrTyrThrGlyLysPheProTyrAspAlaGlnSerSerProAsnPheGluIleThrTr : 192 ||||| |||||| .....!!!!||| !!|||||||||! !!: yrTyrIle------------TyrAspIleSerGluThrProTyrPheGluIleMetPh 204046 : attatatt------------tacgatataTCTGAAACTCCATATTTTGAGATAATGTT : 204090 193 : pValMetGlnIleLeuAlaThrIleLeuAlaAlaGlySerPheMetAlaValAspAla : 211 ::!!:!:|||!!: !.!! !:!:||| !||| !!!!!:!!!:!.!|||||| ! eLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsn 204091 : TCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAAT : 204147 212 : LeuPheValThrLeuValLeuHisLeuCysAlaGlnLeuThrAsnLeuGlnThrAlaP : 231 !!!|||! !! !|||:!!||||||:!!|||!.!|||||| !||||||!::||| !. PhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgL 204148 : TTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGAC : 204207 232 : heArgLysIle : 234 !! !!!.||| euAlaAsnIle 204208 : TTGCAAACATA : 204218 vulgar: NvOr20 95 234 . KQ414617.1 203813 204218 + 125 M 80 240 G 4 0 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203814 204218 125 + . gene_id 1 ; sequence NvOr20 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203814 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 203814 204218 . + . insertions 0 ; deletions 4 KQ414617.1 exonerate:protein2genome:local similarity 203814 204218 125 + . alignment_id 1 ; Query NvOr20 ; Align 203814 96 240 ; Align 204054 180 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr17 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 178 -> 235 Target range: 204047 -> 204218 179 : PhePheTyrAspAlaGlnLysSerProAsnTyrGluIleHisTrpLeuPheGlnCysS : 198 :::...|||||| ...:!!!!!||| !!!:!|||||| !::|||.!!||| : TyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetA 204048 : tatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGG : 204105 199 : erSerThrIlePheAlaAlaSerAlaPheSerSerValAspAlaPhePheAlaValLe : 217 !!!!! !:!:!!. !||| !..!!:!! !.!!|||||| !||||||!.!:!!|| laThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLe 204106 : CCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATT : 204162 218 : uMetLeuHisLeuCysGlyGlnLeuAsnAsnLeuArgGluLysLeuLysLysLeu : 235 |!!:||||||:!!||||||||||||.!.||||||||| !::!||| !!!.:!! uIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIle 204163 : GATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATA : 204218 vulgar: NvOr17 178 235 . KQ414617.1 204047 204218 + 134 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204048 204218 134 + . gene_id 1 ; sequence NvOr17 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204048 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 204048 204218 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204048 204218 134 + . alignment_id 1 ; Query NvOr17 ; Align 204048 179 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr24 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 92 -> 226 Target range: 203801 -> 204209 93 : SerTyrArgLysAlaLeuAlaLeuLeuIleGluPheValGluLysAspTrpLeuAspL : 112 |||!:!! ! !!!.!||| !! !|||:!!.!..!.:!!! !:!!|||||| ! ! | SerPheLeu***ValLeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysL 203802 : TCTTTCCTTTAAGTTCTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGT : 203859 113 : euLysThrIleSerGluGluGluThrMetGluGlnAsnAlaHisThrAlaAsnLysIl : 131 |||||||| !! !|||..!!!:..!||| !|||....!!!..! !.!!... !! euLysThrAspPheGluArgAspValMetIleGlnArgThrArgIleThrArgAlaTh 203860 : TGAAAACGGATTTCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAAC : 203916 132 : eTyrLeuThrCysPhePheLeuGlyAsnSerAlaValAsnSerTyrThrLeuLeu<-> : 150 ! !:!! ! !!!:! ||| ! !!!!||||||! ! ! ! !:!!||| rSerIleLeuSerTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuPro 203917 : CAGTATACTGAGTTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCA : 203973 151 : ArgLeuGlyGlnGluMetSerPheLeuProGlyProProAsp<->LysArgGlnProL : 168 ||| !||| ! !!!!:!:!! !!..! ! !!:!! |||!:!! !! ArgThrGlyIleThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheP 203974 : AGAACCGGTATTACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTC : 204033 169 : euPheAspAlaTyrPheProTyrAspAspLysArgSerProAlaTyrGluIleThrTr : 187 ! ! ...|||::: |||||| .....!!!!||| !!:!||||||! !!: roValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPh 204034 : CGGTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTT : 204090 188 : pLeuMetGlnTyrAlaGlyIleAlaLeuAlaAsnLeuAlaPheThrGlyMetTyrCys : 206 :|||:!:||| ||| !:!!!.!||| ! |||..!!:!! !|||:!: !! ! eLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsn 204091 : TCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAAT : 204147 207 : LeuPheValGlyLeuMetLeuHisLeuCysGlyGlnPheAlaAsnLeuArgIleLysL : 226 !!!|||! ! !|||!!:||||||:!!|||||||||!!.! !|||||||||! !::!| PhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgL 204148 : TTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGAC : 204207 227 : eu : 226 || eu 204208 : TT : 204209 vulgar: NvOr24 92 226 . KQ414617.1 203801 204209 + 130 M 57 171 G 0 3 M 14 42 G 0 3 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203802 204209 130 + . gene_id 1 ; sequence NvOr24 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203802 204209 . + . KQ414617.1 exonerate:protein2genome:local exon 203802 204209 . + . insertions 6 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203802 204209 130 + . alignment_id 1 ; Query NvOr24 ; Align 203802 93 171 ; Align 203976 150 42 ; Align 204021 164 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr24 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 321 -> 390 Target range: 204727 -> 204934 322 : PheHisLeuPheAlaCysCysTyrAlaAlaGluArgLeuGlnAsnGluSerLeuSerI : 341 ||| |||::! !! ::: |||..!! :!!||| !..!: PheProLeuTyrTyrLeuSerSerPheSerIleSerLeuSerIleLysSerGluGluV 204728 : tttcctctatACTACTTgtcttcattttcaatttctttgtCGATAAAGTCCGAAGAAG : 204785 342 : lePheGluAlaAlaTyrSerCysGluTrpTyrAsnLeuSerProGlnAspAlaLysMe : 360 !!!:!! |||||||||..!|||||||||! ||||||!.! !!.!. ! ||||||! alTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsnLysAlaLysSe 204786 : TATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAACAAGGCGAAAAG : 204842 361 : tLeuLeuPheIleMetGlnArgThrLysThrProLeuArgValThrAlaGlyLysLeu : 379 |||:!!!!.|||||| !|||.!!:!!! !|||||| !!:!!||||||||||||||| rLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuThrAlaGlyLysLeu 204843 : TTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGcaggaaaatta : 204899 380 : CysValPheGlyLeuGluLeuPheAlaLysIle : 390 ... !:!! ! !|||..!!!.:!! PheProMetThrMetLeuThrPheCysAsnVal 204900 : tttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: NvOr24 321 390 . KQ414617.1 204727 204934 + 115 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204728 204934 115 + . gene_id 2 ; sequence NvOr24 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204728 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204728 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204728 204934 115 + . alignment_id 2 ; Query NvOr24 ; Align 204728 322 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr31 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 96 -> 230 Target range: 203813 -> 204218 97 : AlaLeuLeuProLeuLeuAlaTyrAlaSerSerAspTrpLysLysProLysSerSerL : 116 !.!||||||||||||:!! ! !:!!..!|||||| !||| !|||!!!..!! ValLeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspP 203814 : GTTCTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATT : 203871 117 : euGluAlaAlaAsnMetTrpSerAsnAlaArgThrAlaArgGlnLeuSerIleThrCy : 135 !!||| !! ! ||| ..!....!!|||! !.!!||| ! !|||||| ! ! heGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSe 203872 : TCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAG : 203928 136 : sLeuPheIleGlyLeuSerAlaValAsnTyrHisMetAlaVal<->ArgIleCysGln : 153 !! ! :!! !!!!!!!||||||! !:! !!:!.!:!! |||! ! !! rTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIle 203929 : TTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATT : 203985 154 : GluLeuArgIleIleProGlyLysThrLysValGluArgGluLeuTyrPheAsnAlaT : 173 !||| !:!! !!..!:!!|||!!.:!!:!!!:! !!! ! ...| ThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrT 203986 : ACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaactt : 204045 174 : yrPheProTyrAsnTyrThrGluSerProAlaTyrGluLeuThrPheAlaMetGlnTy : 192 ||::: |||::: :!!|||!!!||| !!:!|||:!!! !||| !:!:||| yrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMe 204046 : attatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAAT : 204102 193 : rPheAlaThrValLeuAlaThrPheSerTyrSerGlyLeuTyrGlyLeuPheValGly : 211 !.!! !|||||| !.!!.!!!!!|||! !|||:!! !!..!!!!|||! ! ! tAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIle 204103 : GGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATA : 204159 212 : LeuMetLeuHisLeuCysGlyGlnPheAlaAsnLeuArgValLysMetAspLysVal : 230 |||!!:||||||:!!|||||||||!!.! !|||||||||..!::!:!:! !!.:!! LeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIle 204160 : TTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATA : 204218 vulgar: NvOr31 96 230 . KQ414617.1 203813 204218 + 162 M 53 159 G 0 3 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203814 204218 162 + . gene_id 1 ; sequence NvOr31 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203814 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 203814 204218 . + . insertions 3 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203814 204218 162 + . alignment_id 1 ; Query NvOr31 ; Align 203814 97 159 ; Align 203976 150 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr18NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 138 -> 228 Target range: 203942 -> 204215 139 : PheThrMetAlaLeuTyrPheThrMetLeuGluSerLysGlnTyrSerLeuThrLysL : 158 |||||| !.!:!!!:!.!.! !:!:||| !!!!! !!!! !! ! ! : PheThrAlaValMetPheMetIleValLeuProArgThrGlyIleThrThrArgTyrV 203943 : TTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATTACCACTAGATACG : 204000 159 : euAsnAlaThrThrArgPheArgProLeuTyr<->MetSerAlaGluPhePheTyrAs : 176 !!!.. ! !|||!.!.!.!:! !|||!:! :!! ! ... :::...||||| alThrAsnGluThrAsnIleLysLysLeuPheProValProThrTyrTyrIleTyrAs 204001 : TAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttattatatttacga : 204057 177 : pIleGlnSerSerProAsnTyrGluIleIleTrpLeuPheGlnPheLeuSerThrMet : 195 ||||.....!!!!||| !!!:!||||||!!:!::|||.!!|||.!. !!!! !:!! pIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAlaThrLeuVal 204058 : tataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTG : 204114 196 : PheAlaAlaSerAlaPheSerSerValAspAlaPhePheAlaValLeuValLeuHisL : 215 !!. !||| !..!!:!! !.!!|||||| !||||||!.!:!!|||:!!||||||: LeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeuIleLeuHisI 204115 : TTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATA : 204174 216 : euCysGlyGlnLeuAsnAsnLeuLysGluLysLeuLysAsn : 228 !!||||||||||||.!.||||||::: !::!||| !||| leCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsn 204175 : TTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAAC : 204215 vulgar: NvOr18NTE 138 228 . KQ414617.1 203942 204215 + 142 M 30 90 G 0 3 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203943 204215 142 + . gene_id 1 ; sequence NvOr18NTE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203943 204215 . + . KQ414617.1 exonerate:protein2genome:local exon 203943 204215 . + . insertions 3 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203943 204215 142 + . alignment_id 1 ; Query NvOr18NTE ; Align 203943 139 90 ; Align 204036 169 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr32NTE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 158 -> 213 Target range: 204023 -> 204188 159 : ArgAlaPheLeuPheGluSerHisPheProPheAspValPheAsnSerProTrpPheG : 178 !:! !|||! ! ! ::::::::: :::|||:::! !.!.!!!|||!::|||| LysLeuPheProValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheG 204024 : AAGCTTTTTCCGGTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTG : 204081 179 : luValThrTrpIleIleGlnAlaPheCysThrPheSerAlaThrThrAlaTyrSerGl : 197 ||:!!! !!:::!!:!!||| ! ! ! ! ! ! ! !.!! !..!|||! !|| luIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGl 204082 : AGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGG : 204138 198 : yIleAspSerPhePheAlaValLeuValLeuHisLeuCysGlyGlnLeu : 213 |:!!|||!:!||||||!.!:!!|||:!!||||||:!!|||||||||||| yValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeu 204139 : TGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTG : 204188 vulgar: NvOr32NTE 158 213 . KQ414617.1 204023 204188 + 119 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204024 204188 119 + . gene_id 1 ; sequence NvOr32NTE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204024 204188 . + . KQ414617.1 exonerate:protein2genome:local exon 204024 204188 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204024 204188 119 + . alignment_id 1 ; Query NvOr32NTE ; Align 204024 159 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr30PSE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 325 -> 392 Target range: 204733 -> 204934 326 : LeuPheIleCysCysTyrValSerGluLysLeuLysValGluSerThrSerIleAlaL : 345 |||::! !! ||| ...|||..!:!!:!!||| !..!:!! ! LeuTyrTyrLeuSerSerPheSerIleSerLeuSerIleLysSerGluGluValTyrV 204734 : ctatACTACTTgtcttcattttcaatttctttgtCGATAAAGTCCGAAGAAGTATACG : 204791 346 : ysAlaAlaTyrGluCysGlnTrpTyrAspLeuSerProLysAspIleMetLeuLeuVa : 364 |||||||||||||||:!!|||! :!!|||!.! !!!!. ! ! !|||:! alAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsnLysAlaLysSerLeuIl 204792 : TTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAACAAGGCGAAAAGTTTGAT : 204848 365 : lMetValIleAsnArgAlaLysAspProIleGluIleThrAlaGlyLysPheCysThr : 383 !:!::!!!!: ||||||:!! |||:!! :!!||||||||||||... eLeuIleMetAlaArgAlaGlnArgProLeuCysLeuThrAlaGlyLysLeuPhePro 204849 : TTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGcaggaaaattatttcct : 204905 384 : TyrSerLeuSerLeuTyrAlaGlnIle : 392 !!!:!! ! !!:!..!.!.:!! MetThrMetLeuThrPheCysAsnVal 204906 : atGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: NvOr30PSE 325 392 . KQ414617.1 204733 204934 + 100 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204734 204934 100 + . gene_id 1 ; sequence NvOr30PSE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204734 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204734 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204734 204934 100 + . alignment_id 1 ; Query NvOr30PSE ; Align 204734 326 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr29 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 98 -> 232 Target range: 203813 -> 204218 99 : AlaLeuValProLeuLeuSerPheValGlnThrAspTrpSerAsnPheLysThrValS : 118 !.!|||:!!||||||:!!!:!.!.:!! ! !||||||:!!!!.!!.||||||! !! ValLeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspP 203814 : GTTCTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATT : 203871 119 : erGluAlaAlaAsnMetTrpSerAsnAlaLeuAlaAlaArgLysIleSerLeuLeuCy : 137 !||| !! ! ||| ..!....!!! ! !.!!||| !! !|||:!!||| ! heGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSe 203872 : TCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAG : 203928 138 : sValValIleGlyTrpValThrValAsnCysHisLeuAlaIle<->ArgIleGlyGln : 155 ! !!.!:!! !!::..!.!!|||! ! ! :!!!.!:!! |||! !||| rTyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIle 203929 : TTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATT : 203985 156 : GluLeuArgPheMetSerGlyLysAsnGlyLeuThrArgLeuProPhePheAspSerT : 175 !|||!:!:!:!!!..!:!!!.!..!:!!! !!:!||| ! ! :::| ThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrT 203986 : ACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaactt : 204045 176 : yrPheProTyrAspTyrThrProSerProValTyrGluIleThrPheValIleGlnTy : 194 ||::: |||||| :!! !!!!||| !!:!||||||! !|||:!!:!!||| yrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMe 204046 : attatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAAT : 204102 195 : rIleAlaThrMetLeuAlaThrPheGlyTyrSerGlyLeuTyrSerLeuPheValAla : 213 !.!! !:!!||| !.!!.!! !!|||! !|||:!! !!!:!!!!|||! ! ! tAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIle 204103 : GGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATA : 204159 214 : LeuMetLeuHisLeuCysGlyGlnPheAlaAsnLeuArgAspArgLeuTyrThrVal : 232 |||!!:||||||:!!|||||||||!!.! !||||||||| |||||| !.!:!! LeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIle 204160 : TTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATA : 204218 vulgar: NvOr29 98 232 . KQ414617.1 203813 204218 + 171 M 53 159 G 0 3 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203814 204218 171 + . gene_id 1 ; sequence NvOr29 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203814 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 203814 204218 . + . insertions 3 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203814 204218 171 + . alignment_id 1 ; Query NvOr29 ; Align 203814 99 159 ; Align 203976 152 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr28 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 99 -> 249 Target range: 203822 -> 204275 100 : ProLeuLeuSerPheValGluAlaAspTrpLysSerTyrLysThrAspSerAspMetT : 119 ||||||:!!!:!.!.:!!! !! !|||||| !!.!! |||||||||! !!!:! ProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspPheGluArgA 203823 : CCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATTTCGAAAGAG : 203880 120 : hrAsnMetTrpSerAsnAlaGlnThrThrArgArgIleSerMetIleCysValIleLe : 138 ! ||| ..!....!!!:!! !|||||| !! !|||!!::!: !! ! || spValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSerTyrAlaLe 203881 : ACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAGTTATGCGTT : 203937 139 : uGlyAlaGlyThrValAsnGlyHisLeuPheIle<->ArgLeuGlyGlnGluAlaLys : 156 | ! ! !.!!|||! ! :!! !!:!! ||| !||| .!!!:! uIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIleThrThrArg 203938 : AATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATTACCACTAGA : 203994 157 : IleLeuProGlyLysAspGlyAlaThrArgLeuSerPheValAspSerTyrPheProT : 176 !:!! !!..!:!! !..! !! !!:!|||! ! ||| :::|||::: | TyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrTyrTyrIleT 203995 : TACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttattatattt : 204054 177 : yrAspTyrSerProThrProIleTyrGluIleThrTrpAlaIleGlnTyrIleGlyAl : 195 ||||| ||| !|||||| !!:!||||||! !!:: !:!!||| ! ! yrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAlaThrLe 204055 : acgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGCCACCTT : 204111 196 : aAlaLeuAlaThrCysAlaTyrSerGlyIleTyrCysLeuPheValAlaLeuMetLeu : 214 !!.!||| !.!! !..!|||! !|||:!! !! !!!!|||! ! !|||!!:||| uValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeuIleLeu 204112 : AGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTGATCCTT : 204168 215 : HisLeuCysGlyGlnPheSerAsnLeuArgLysLysLeuArgArgValValThrAsnG : 234 |||:!!|||||||||!!...!|||||||||! !::!||| !!.!:!! ! ! | HisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysHisLeuG 204169 : CATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAACATTTGG : 204228 235 : luAspAspLysArgLysPheValGluLysLeuAlaGluIleValLys : 249 || ! ! ! |||! !!.||| ! !:!!! !!!: !|||::! luThrPheAspArgIleLeuValThrThrValGluAspHisValArg 204229 : AAACTTTTGATCGTATTTTAGTGACCACGGTAGAAGATCATGTGCGA : 204275 vulgar: NvOr28 99 249 . KQ414617.1 203822 204275 + 162 M 50 150 G 0 3 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203823 204275 162 + . gene_id 1 ; sequence NvOr28 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203823 204275 . + . KQ414617.1 exonerate:protein2genome:local exon 203823 204275 . + . insertions 3 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203823 204275 162 + . alignment_id 1 ; Query NvOr28 ; Align 203823 100 150 ; Align 203976 150 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr29 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 171 -> 239 Target range: 3180146 -> 3180350 172 : PheAspSerTyrPheProTyrAspTyrThrProSerProValTyrGluIleThrPh : 190 !:! .!!!::|||||||||||||||||| !!:!! !:!!!:! !:!:|||!: TyrArgGlyTrpPheProTyrAspTyrThrThrAlaValLeuPheProLeuThrTy 3180147 : TACAGAGGCTGGTTCCCTTACGATTACACGACCGCCGTACTTTTTCCATTGACATA : 3180201 191 : eValIleGlnTyrIleAlaThrMetLeuAlaThrPheGlyTyrSerGlyLeuTyrS : 209 !!.!:!:||| :!!..!..!:!::!! !:!!!:: !:!! !..!:!! !!! rAlaLeuGlnLeuLeuCysValLeuValTyrSerTrpIleHisValSerValAspI 3180202 : CGCTCTGCAGCTATTATGCGTGCTCGTATATTCCTGGATCCACGTTTCAGTGGATA : 3180258 210 : erLeuPheValAlaLeuMetLeuHisLeuCysGlyGlnPheAlaAsnLeuArgAsp : 227 !|||||| !!!.!|||:!!:!!!!.|||||| !!||||||! ||| ... leLeuPhePheGlyLeuLeuMetGlnLeuCysCysGlnPheAspIleLeuPheSer 3180259 : TTCTCTTCTTCGGACTGTTGATGCAACTGTGCTGTCAATTCGAcattctcttctct : 3180312 228 : ArgLeuTyrThrValThrGlnLysLysAlaGlyVal : 239 |||... !!:!:!!|||..!:!!!!. !|||||| ArgPheSerSerIleThrSerGluAsnLysGlyVal 3180313 : cgtttcAGTAGCATAACGTCGGAGAACAAGGGTGTT : 3180350 vulgar: NvOr29 171 239 . KQ414646.1 3180146 3180350 + 111 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180147 3180350 111 + . gene_id 1 ; sequence NvOr29 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180147 3180350 . + . KQ414646.1 exonerate:protein2genome:local exon 3180147 3180350 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180147 3180350 111 + . alignment_id 1 ; Query NvOr29 ; Align 3180147 172 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr29 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 166 -> 232 Target range: 3164400 -> 3164598 167 : ThrArgLeuProPhePheAspSerTyrPheProTyrAspTyrThrProSerProVa : 185 !:!||| !! !.!.||| :!!!::!!.||||||||||||:!!|||:!!|||:! SerArgLysLeuMetPheArgAlaTrpLeuProTyrAspTyrSerProAlaProIl 3164401 : AGTAGAAAACTGATGTTTCGAGCATGGTTACCCTACGATTACTCCCCTGCGCCCAT : 3164455 186 : lTyrGluIleThrPheValIleGlnTyrIleAlaThrMetLeuAlaThrPheGlyT : 204 !!:! :!!||||||||| !||| !||||||.!!! !:!!..! ! !..! ePheIleLeuThrPheValHisGlnAlaIleAlaAlaThrIleCysCysThrSerS 3164456 : TTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCGACGATATGTTGCACTTCGA : 3164512 205 : yrSerGlyLeuTyrSerLeuPheValAlaLeuMetLeuHisLeuCysGlyGlnPhe : 222 ! ! !:!! !!||||||!:!..!!.!|||:!!:!!:!!:!!! ! !!|||||| erValThrValAspSerLeuTyrThrGlyLeuLeuIleAsnIleTyrCysGlnPhe 3164513 : GCGTCACTGTGGATTCTCTATACACTGGCTTGTTGATTAATATCTACTGCCAGTTC : 3164566 223 : AlaAsnLeuArgAspArgLeuTyrThrVal : 232 ! !! |||..! !!|||||| !.!||| GluIleLeuGluHisArgLeuArgAsnVal 3164567 : GAGATACTAGAACATCGTCTAAGGAACGTT : 3164598 vulgar: NvOr29 166 232 . KQ414646.1 3164400 3164598 + 107 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164401 3164598 107 + . gene_id 2 ; sequence NvOr29 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164401 3164598 . + . KQ414646.1 exonerate:protein2genome:local exon 3164401 3164598 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164401 3164598 107 + . alignment_id 2 ; Query NvOr29 ; Align 3164401 167 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr28 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 161 -> 239 Target range: 3164391 -> 3164625 162 : AspGlyAlaThrArgLeuSerPheValAspSerTyrPheProTyrAspTyrSerPr : 180 ||| !::!!:!||| ! !.!. !! :!!!::!!.||||||||||||||||| AspPheSerSerArgLysLeuMetPheArgAlaTrpLeuProTyrAspTyrSerPr 3164392 : GATTTTAGTAGTAGAAAACTGATGTTTCGAGCATGGTTACCCTACGATTACTCCCC : 3164446 181 : oThrProIleTyrGluIleThrTrpAlaIleGlnTyrIleGlyAlaAlaLeuAlaT : 199 |.!!||||||!:! :!!|||!::!.! !||| !|||!.!|||.!!:!!..! oAlaProIlePheIleLeuThrPheValHisGlnAlaIleAlaAlaThrIleCysC 3164447 : TGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCGACGATATGTT : 3164503 200 : hrCysAlaTyrSerGlyIleTyrCysLeuPheValAlaLeuMetLeuHisLeuCys : 217 ! !:!! ! ! !:!: !!! !|||!:!..!!.!|||:!!:!!:!!:!!! ! ysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLeuIleAsnIleTyr 3164504 : GCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTGATTAATATCTAC : 3164557 218 : GlyGlnPheSerAsnLeuArgLysLysLeuArgArgValValThrAsnGluAspAs : 236 !!||||||..!! |||..! ! :::||||||!.!||| !|||.!.:!!||||| CysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysThrGluGlnAspAs 3164558 : TGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAACTGAGCAGGATGA : 3164614 237 : pLysArgLys : 239 |... !||| pSerValLys 3164615 : CTCTGTGAAG : 3164625 vulgar: NvOr28 161 239 . KQ414646.1 3164391 3164625 + 123 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164392 3164625 123 + . gene_id 1 ; sequence NvOr28 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164392 3164625 . + . KQ414646.1 exonerate:protein2genome:local exon 3164392 3164625 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164392 3164625 123 + . alignment_id 1 ; Query NvOr28 ; Align 3164392 162 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr28 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 161 -> 239 Target range: 3157863 -> 3158097 162 : AspGlyAlaThrArgLeuSerPheValAspSerTyrPheProTyrAspTyrSerPr : 180 ||| !::!!.!||| ! !.!. !! :!!!::.!.||||||||||||||||| AspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrAspTyrSerPr 3157864 : GATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACGATTACTCCCC : 3157918 181 : oThrProIleTyrGluIleThrTrpAlaIleGlnTyrIleGlyAlaAlaLeuAlaT : 199 |.!!||||||!:! :!!|||! !.! !||| !|||!.!:!!.!!:!!..! oAlaProIlePheIleLeuThrSerValHisGlnAlaIleAlaSerThrIleCysC 3157919 : TGCGCCCATTTTTATCCTTACCTCCGTCCATCAAGCTATAGCCTCGACGATATGTT : 3157975 200 : hrCysAlaTyrSerGlyIleTyrCysLeuPheValAlaLeuMetLeuHisLeuCys : 217 ! !:!! ! ! !:!: !! !|||!:!..!!.!|||:!!:!!:!!:!!! ! ysThrSerThrValThrValAspThrLeuTyrThrGlyLeuLeuIleAsnIleTyr 3157976 : GCACTTCGACCGTCACTGTGGATACTCTATACACTGGCTTGTTGATTAATATCTAC : 3158029 218 : GlyGlnPheSerAsnLeuArgLysLysLeuArgArgValValThrAsnGluAspAs : 236 !!||||||..!! |||..! ! :::||||||!.!||| !|||.!.:!!||||| CysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysThrGluGlnAspAs 3158030 : TGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAACTGAGCAGGATGA : 3158086 237 : pLysArgLys : 239 |... !||| pSerValLys 3158087 : CTCTGTGAAG : 3158097 vulgar: NvOr28 161 239 . KQ414646.1 3157863 3158097 + 115 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157864 3158097 115 + . gene_id 2 ; sequence NvOr28 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3157864 3158097 . + . KQ414646.1 exonerate:protein2genome:local exon 3157864 3158097 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157864 3158097 115 + . alignment_id 2 ; Query NvOr28 ; Align 3157864 162 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr29 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 166 -> 232 Target range: 1946831 -> 1946633 167 : ThrArgLeuProPhePheAspSerTyrPheProTyrAspTyrThrProSerProVa : 185 !.!||| !! !.!.||| :!!!::.!.||||||||||||:!!|||:!!|||:! AsnArgLysLeuMetPheArgAlaTrpIleProTyrAspTyrSerProAlaProIl 1946831 : AATAGAAAACTGATGTTTCGAGCATGGATACCCTACGATTACTCCCCTGCGCCCAT : 1946777 186 : lTyrGluIleThrPheValIleGlnTyrIleAlaThrMetLeuAlaThrPheGlyT : 204 !!:! :!!||||||||| !||| !||||||.!!! !:!!..! ! !..! ePheIleLeuThrPheValHisGlnAlaIleAlaAlaThrIleCysCysThrSerS 1946776 : TTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCGACGATATGTTGCACTTCGA : 1946720 205 : yrSerGlyLeuTyrSerLeuPheValAlaLeuMetLeuHisLeuCysGlyGlnPhe : 222 ! ! !:!! !!||||||!:!..!!.!|||:!!:!!:!!:!!! ! !!|||||| erValThrValAspSerLeuTyrThrGlyLeuLeuIleAsnIleTyrCysGlnPhe 1946719 : GCGTCACTGTGGATTCTCTATACACTGGCTTGTTGATTAATATCTACTGCCAGTTC : 1946666 223 : AlaAsnLeuArgAspArgLeuTyrThrVal : 232 ! !! |||..! !!|||||| !.!||| GluIleLeuGluHisArgLeuArgAsnVal 1946665 : GAGATACTAGAACATCGTCTAAGGAACGTT : 1946634 vulgar: NvOr29 166 232 . KQ414661.1 1946831 1946633 - 106 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946634 1946831 106 - . gene_id 1 ; sequence NvOr29 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946634 1946831 . - . KQ414661.1 exonerate:protein2genome:local exon 1946634 1946831 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1946634 1946831 106 - . alignment_id 1 ; Query NvOr29 ; Align 1946832 167 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr28 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 161 -> 239 Target range: 1946840 -> 1946606 162 : AspGlyAlaThrArgLeuSerPheValAspSerTyrPheProTyrAspTyrSerPr : 180 ||| !::!!.!||| ! !.!. !! :!!!::.!.||||||||||||||||| AspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrAspTyrSerPr 1946840 : GATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACGATTACTCCCC : 1946786 181 : oThrProIleTyrGluIleThrTrpAlaIleGlnTyrIleGlyAlaAlaLeuAlaT : 199 |.!!||||||!:! :!!|||!::!.! !||| !|||!.!|||.!!:!!..! oAlaProIlePheIleLeuThrPheValHisGlnAlaIleAlaAlaThrIleCysC 1946785 : TGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCGACGATATGTT : 1946729 200 : hrCysAlaTyrSerGlyIleTyrCysLeuPheValAlaLeuMetLeuHisLeuCys : 217 ! !:!! ! ! !:!: !!! !|||!:!..!!.!|||:!!:!!:!!:!!! ! ysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLeuIleAsnIleTyr 1946728 : GCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTGATTAATATCTAC : 1946675 218 : GlyGlnPheSerAsnLeuArgLysLysLeuArgArgValValThrAsnGluAspAs : 236 !!||||||..!! |||..! ! :::||||||!.!||| !|||.!.:!!||||| CysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysThrGluGlnAspAs 1946674 : TGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAACTGAGCAGGATGA : 1946618 237 : pLysArgLys : 239 |... !||| pSerValLys 1946617 : CTCTGTGAAG : 1946607 vulgar: NvOr28 161 239 . KQ414661.1 1946840 1946606 - 122 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946607 1946840 122 - . gene_id 1 ; sequence NvOr28 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946607 1946840 . - . KQ414661.1 exonerate:protein2genome:local exon 1946607 1946840 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1946607 1946840 122 - . alignment_id 1 ; Query NvOr28 ; Align 1946841 162 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr32NTE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 322 -> 373 Target range: 1395323 -> 1395476 323 : SerIleGluIleAlaAspAlaAlaTyrAsnCysLysTrpTyrAsnPheGlnLysLy : 341 |||:!!..!|||::!:!!|||||||||!:!! |||||| !.!..!. :! SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 342 : sGluValSerAspLeuIleLeuIleMetLysArgAlaGlnTyrProLeuAspIleT : 360 !!!: ! ! !:!!||||||:!!|||! !|||:!!||| ! !||| |||| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 361 : hrAlaGlyLysPheCysSerLeuSerLeuArgLeuPheAla : 373 |||||||||||||| ..!|||||||||..! !|||||| hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAla 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCA : 1395476 vulgar: NvOr32NTE 322 373 . KQ414716.1 1395323 1395476 + 107 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395476 107 + . gene_id 1 ; sequence NvOr32NTE ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395476 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395476 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395476 107 + . alignment_id 1 ; Query NvOr32NTE ; Align 1395324 323 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr32NTE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 322 -> 392 Target range: 1387619 -> 1387829 323 : SerIleGluIleAlaAspAlaAlaTyrAsnCysLysTrpTyrAsnPheGlnLysLy : 341 ||| !...|||.!!.!.:!:...|||||| ||||||:!!.!.:!! :: SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 342 : sGluValSerAspLeuIleLeuIleMetLysArgAlaGlnTyrProLeuAspIleT : 360 !|||!.! ::::::||||||::: |||:!!||| ! !||| :!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 361 : hrAlaGlyLysPheCysSerLeuSerLeuArgLeuPheAlaIleIleGlyLysThr : 378 |||||||||||||| !:!||||||||| ! !||||||! ::: ... hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnValArgAsn*** 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgtaagaaattga : 1387785 379 : SerLeuGlyTyrLeuSerMetLeuLeuAlaValLysGluArg : 392 :::... |||! !! !! :!! ! ||||||...::: AsnPheArgTyrArgIleSerValThr***ValLysHisLys 1387786 : aattttcggtaTCGAATAAGTGTGACCTAagtaaaacataaa : 1387829 vulgar: NvOr32NTE 322 392 . KQ414716.1 1387619 1387829 + 106 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387829 106 + . gene_id 2 ; sequence NvOr32NTE ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387829 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387829 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387829 106 + . alignment_id 2 ; Query NvOr32NTE ; Align 1387620 323 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr27 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 348 -> 401 Target range: 1387619 -> 1387778 349 : SerGluAsnLeuPheArgAlaIlePheGluIleArgTrpTyrAspLeuAlaProAs : 367 ||||||..!:!! !:!:!:::::::...... |||||||||||| !|||.. SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 368 : nAspSerLysLeuLeuIleIleIleMetThrGlnThrLysThrProIleGluIleT : 386 .!!::!!:::::::::::::::|||::: ::::!!:!!! ! !:!! !:!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 387 : hrValGlyLysPheValAlaPheSerLeuGlyTyrPheCysSerVal : 401 ||!.!|||||||||||| !.!!||||||!.! |||..!!::||| hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: NvOr27 348 401 . KQ414716.1 1387619 1387778 + 108 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387778 108 + . gene_id 1 ; sequence NvOr27 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387778 108 + . alignment_id 1 ; Query NvOr27 ; Align 1387620 349 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr20 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 333 -> 386 Target range: 1387619 -> 1387778 334 : SerLeuGlnLeuGlyAsnAlaIlePheTyrSerLysTrpTyrAsnLeuProAlaAs : 352 ||| !!:::!! !.!.:!::::::: ||||||:!!||| ! !!.. SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 353 : nLysAlaArgLeuLeuIleIleAlaIleLeuArgValGlnLysProLeuGluLeuS : 371 .:!!||||||:::::::::::: ||||||||| !|||||| !||| !|||! gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 372 : erAlaGlyLysPheCysIlePheSerLeuAsnLeuPheCysAsnIle : 386 !!|||||||||||| ! !.!!|||||| ! !|||..!|||::: hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: NvOr20 333 386 . KQ414716.1 1387619 1387778 + 103 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387778 103 + . gene_id 1 ; sequence NvOr20 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387778 103 + . alignment_id 1 ; Query NvOr20 ; Align 1387620 334 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr23 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 349 -> 402 Target range: 1387619 -> 1387778 350 : SerAsnGlnLeuPheArgSerIlePheGlnIleArgTrpTyrAspLeuThrProLy : 368 |||.!.!:::!! !:!|||::::::...... ||||||||||||! !|||:: SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 369 : sAspSerArgLeuLeuIleIleIleMetValGlnThrLysLysProIleGluIleT : 387 !!!::!!|||::::::::::::|||::::::::::!!:!!||| !:!! !:!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 388 : hrValGlyLysPheValProPheSerLeuAspTyrPheCysSerVal : 402 ||!.!|||||||||||| !.!!||||||! ! |||..!!::||| hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: NvOr23 349 402 . KQ414716.1 1387619 1387778 + 118 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387778 118 + . gene_id 1 ; sequence NvOr23 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387778 118 + . alignment_id 1 ; Query NvOr23 ; Align 1387620 350 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr25 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 331 -> 384 Target range: 1395323 -> 1395482 332 : SerLeuSerIleCysAspLeuAlaTyrAsnTyrGluTrpTyrArgLeuProAlaAr : 350 |||||||||||| !!:!! !||||||!:!! ||||||! !||| ! !!!: SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 351 : gAspAlaArgLeuLeuLeuPheIleMetLeuArgAlaGluArgProLeuGluValT : 369 !||| !!.!:!!:!!:!!.!!:!!|||:!!|||:!!:!!|||! !||| !:!!| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 370 : hrAlaGlyLysPheCysAlaPheSerLeuArgLeuTyrAlaGlnIle : 384 |||||||||||||| ! !!!.||||||..! !!:!|||.!.:!! hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnVal 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTA : 1395482 vulgar: NvOr25 331 384 . KQ414716.1 1395323 1395482 + 117 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395482 117 + . gene_id 1 ; sequence NvOr25 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395482 117 + . alignment_id 1 ; Query NvOr25 ; Align 1395324 332 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr25 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 331 -> 384 Target range: 1387619 -> 1387778 332 : SerLeuSerIleCysAspLeuAlaTyrAsnTyrGluTrpTyrArgLeuProAlaAr : 350 ||| ! !!||| .!.! ...||||||::: |||||| !||| ! !!|| SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 351 : gAspAlaArgLeuLeuLeuPheIleMetLeuArgAlaGluArgProLeuGluValT : 369 |!!:||||||::::::|||...|||:::||||||:!!:!!!:! !||| !:!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 370 : hrAlaGlyLysPheCysAlaPheSerLeuArgLeuTyrAlaGlnIle : 384 |||||||||||||| !.!!|||||| ! !!:!|||.!.::: hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: NvOr25 331 384 . KQ414716.1 1387619 1387778 + 114 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387778 114 + . gene_id 2 ; sequence NvOr25 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387778 114 + . alignment_id 2 ; Query NvOr25 ; Align 1387620 332 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr18NTE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 330 -> 383 Target range: 1395323 -> 1395482 331 : SerMetGluIleGlyAsnAlaAlaTyrGlnCysAsnTrpTyrThrLeuProProSe : 349 |||:!:..!|||.!!||||||||||||...! !|||||| !||| !|||.. SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 350 : rGluAlaLysCysLeuThrLeuIleMetIleArgAlaLysGlnProPheGluIleT : 368 !!!: ! ! !:!!! !|||:!!|||||||||:!!:!!::!! !!!. !|||| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 369 : hrAlaGlyLysPheAlaAlaPheSerLeuGluLeuTyrCysArgIle : 383 |||||||||||||| !! !!!.||||||||| !!:!...!.!:!! hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnVal 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTA : 1395482 vulgar: NvOr18NTE 330 383 . KQ414716.1 1395323 1395482 + 117 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395482 117 + . gene_id 1 ; sequence NvOr18NTE ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395482 117 + . alignment_id 1 ; Query NvOr18NTE ; Align 1395324 331 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr18NTE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 321 -> 383 Target range: 1402408 -> 1402594 322 : TyrValAlaGluValLeuArgThrGluSerMetGluIleGlyAsnAlaAlaTyrGl : 340 |||::: !!!!||| ! !!|||... !|||||||||.!!||||||:! TyrLeuLysCysCysPheArgHis***SerGlnLeuIleGlyAsnThrAlaTyrGl 1402409 : tatttaaaatgttGCTTTCGTCATTAGAGCCAACTAATCGGCAATACGGCGTATGA : 1402463 341 : nCysAsnTrpTyrThrLeuProProSerGluAlaLysCysLeuThrLeuIleMetI : 359 !! ! !|||||| !|||! ! !!!!!|||::!:!! !|||! !! !:!!!!:: uPheLeuTrpTyrAspLeuArgSerThrGluSerGlnLeuLeuIleProValIleL 1402464 : ATTTCTTTGGTACGATTTACGTTCAACTGAAAGCCAACTTCTAATACCTGTAATAT : 1402520 360 : leArgAlaLysGlnProPheGluIleThrAlaGlyLysPheAlaAlaPheSerLeu : 377 !:|||:!!:!!:!! !||| !...||| |||||||||::::::..!|||||| euArgSerGlnLysGlyPheThrPheThrPheGlyLysPheSerSerLeuSerLeu 1402521 : TGAGGTCTCAAAAGGGTTTCACGTttacttttggaaaattttcaagtctCTCCTTG : 1402574 378 : GluLeuTyrCysArgIle : 383 ||| !!:! !:!! GluSerPheThrAlaVal 1402575 : GAAAGCTTTACGGCCGTA : 1402594 vulgar: NvOr18NTE 321 383 . KQ414716.1 1402408 1402594 + 105 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1402409 1402594 105 + . gene_id 2 ; sequence NvOr18NTE ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1402409 1402594 . + . KQ414716.1 exonerate:protein2genome:local exon 1402409 1402594 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1402409 1402594 105 + . alignment_id 2 ; Query NvOr18NTE ; Align 1402409 322 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr28 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 330 -> 383 Target range: 1395323 -> 1395482 331 : SerValSerIleValArgAlaAlaTyrAsnCysGluTrpTyrAsnLeuSerAlaLy : 349 |||:!!|||||| !!.!|||||||||!:!! |||||| !|||..! !!:! SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 350 : sAspAlaMetLeuLeuValMetIleMetAsnArgAlaLysLysProLeuArgIleT : 368 !||| ! :!!:!!:!!:!::!!|||! |||:!!:!!!:!! !|||! !|||| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 369 : hrAlaGlyLysPheCysAlaPheSerLeuSerLeuTyrAlaGlnIle : 383 |||||||||||||| ! !!!.||||||..! !!:!|||.!.:!! hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnVal 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTA : 1395482 vulgar: NvOr28 330 383 . KQ414716.1 1395323 1395482 + 111 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395482 111 + . gene_id 1 ; sequence NvOr28 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395482 111 + . alignment_id 1 ; Query NvOr28 ; Align 1395324 331 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr28 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 330 -> 383 Target range: 1387619 -> 1387778 331 : SerValSerIleValArgAlaAlaTyrAsnCysGluTrpTyrAsnLeuSerAlaLy : 349 ||| ! !!|||..!!:!:!:...|||||| ||||||:!!|||!.! !!:: SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 350 : sAspAlaMetLeuLeuValMetIleMetAsnArgAlaLysLysProLeuArgIleT : 368 !!!:||| ::::::::::::|||::: |||:!!:!!||| !|||! !:!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 369 : hrAlaGlyLysPheCysAlaPheSerLeuSerLeuTyrAlaGlnIle : 383 |||||||||||||| !.!!||||||:!! !!:!|||.!.::: hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: NvOr28 330 383 . KQ414716.1 1387619 1387778 + 107 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387778 107 + . gene_id 2 ; sequence NvOr28 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387778 107 + . alignment_id 2 ; Query NvOr28 ; Align 1387620 331 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr29 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 331 -> 384 Target range: 1395323 -> 1395482 332 : SerValSerIleAlaLysAlaAlaTyrGluCysGlnTrpTyrHisLeuSerProLy : 350 |||:!!||||||::!!!.|||||||||...! ! ||||||! !|||..!|||:! SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 351 : sAspValMetLeuLeuIleMetIleIleAsnArgAlaLysAspProIleGluMetT : 369 !||| ! :!!:!!|||:!::!!!!:! |||:!!:!! ! !:!! !!!:| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 370 : hrAlaGlyLysPheCysThrPheSerLeuSerLeuTyrAlaGlnIle : 384 |||||||||||||| !!!.||||||..! !!:!|||.!.:!! hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnVal 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTA : 1395482 vulgar: NvOr29 331 384 . KQ414716.1 1395323 1395482 + 108 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395482 108 + . gene_id 1 ; sequence NvOr29 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395482 108 + . alignment_id 1 ; Query NvOr29 ; Align 1395324 332 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr29 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 331 -> 384 Target range: 1387619 -> 1387778 332 : SerValSerIleAlaLysAlaAlaTyrGluCysGlnTrpTyrHisLeuSerProLy : 350 ||| ! !!|||.!!:!!:!:...|||... |||||| !!|||!.!|||:: SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 351 : sAspValMetLeuLeuIleMetIleIleAsnArgAlaLysAspProIleGluMetT : 369 !!!:!.! ::::::::::::|||||| |||:!!:!! ! !:!! !:!:| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 370 : hrAlaGlyLysPheCysThrPheSerLeuSerLeuTyrAlaGlnIle : 384 |||||||||||||| !.!.!!||||||:!! !!:!|||.!.::: hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: NvOr29 331 384 . KQ414716.1 1387619 1387778 + 102 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387778 102 + . gene_id 2 ; sequence NvOr29 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387778 102 + . alignment_id 2 ; Query NvOr29 ; Align 1387620 332 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr31 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 328 -> 381 Target range: 1395323 -> 1395482 329 : SerValSerIleAlaAsnAlaAlaTyrLysCysGlnTrpTyrHisLeuProAlaLy : 347 |||:!!||||||::!||||||||||||!..! ! ||||||! !||| ! !!:! SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 348 : sAspValMetLeuLeuValMetValIleAsnArgAlaLysAspProIleGlnIleT : 366 !||| ! :!!:!!:!!:!::!!!!:! |||:!!:!! ! !:!! !|||| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 367 : hrAlaGlyLysPheCysValPheSerLeuSerLeuLeuAlaGlnIle : 381 |||||||||||||| ! !!!.||||||..! !!!!|||.!.:!! hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnVal 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTA : 1395482 vulgar: NvOr31 328 381 . KQ414716.1 1395323 1395482 + 101 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395482 101 + . gene_id 1 ; sequence NvOr31 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395482 101 + . alignment_id 1 ; Query NvOr31 ; Align 1395324 329 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr30PSE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 339 -> 392 Target range: 1387619 -> 1387778 340 : SerThrSerIleAlaLysAlaAlaTyrGluCysGlnTrpTyrAspLeuSerProLy : 358 ||| ! !!|||.!!:!!:!:...|||... ||||||||||||!.!|||:: SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 359 : sAspIleMetLeuLeuValMetValIleAsnArgAlaLysAspProIleGluIleT : 377 !!!: ! :::::::::::::::||| |||:!!:!! ! !:!! !:!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 378 : hrAlaGlyLysPheCysThrTyrSerLeuSerLeuTyrAlaGlnIle : 392 |||||||||||||| !.! !||||||:!! !!:!|||.!.::: hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: NvOr30PSE 339 392 . KQ414716.1 1387619 1387778 + 106 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387778 106 + . gene_id 1 ; sequence NvOr30PSE ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387778 106 + . alignment_id 1 ; Query NvOr30PSE ; Align 1387620 340 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr30PSE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 339 -> 392 Target range: 1395323 -> 1395482 340 : SerThrSerIleAlaLysAlaAlaTyrGluCysGlnTrpTyrAspLeuSerProLy : 358 ||| !||||||::!!!.|||||||||...! ! |||||| !|||..!|||:! SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 359 : sAspIleMetLeuLeuValMetValIleAsnArgAlaLysAspProIleGluIleT : 377 !|||! ! :!!:!!:!!:!::!!!!:! |||:!!:!! ! !:!! !|||| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 378 : hrAlaGlyLysPheCysThrTyrSerLeuSerLeuTyrAlaGlnIle : 392 |||||||||||||| !! ||||||..! !!:!|||.!.:!! hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnVal 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTA : 1395482 vulgar: NvOr30PSE 339 392 . KQ414716.1 1395323 1395482 + 105 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395482 105 + . gene_id 2 ; sequence NvOr30PSE ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395482 105 + . alignment_id 2 ; Query NvOr30PSE ; Align 1395324 340 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr17 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 327 -> 389 Target range: 1402408 -> 1402594 328 : TyrValAlaGluValLeuArgThrGluSerMetGluValGlyAsnAlaAlaTyrGl : 346 |||::: !!!!||| ! !!|||... !:!!||||||.!!|||||||| TyrLeuLysCysCysPheArgHis***SerGlnLeuIleGlyAsnThrAlaTyrGl 1402409 : tatttaaaatgttGCTTTCGTCATTAGAGCCAACTAATCGGCAATACGGCGTATGA : 1402463 347 : uSerAsnTrpTyrAspLeuProSerCysGluThrLysLeuLeuMetLeuValIleI : 365 |! ! !||||||||||||! !||| !|||!:!:!!||||||!!:! !||||||: uPheLeuTrpTyrAspLeuArgSerThrGluSerGlnLeuLeuIleProValIleL 1402464 : ATTTCTTTGGTACGATTTACGTTCAACTGAAAGCCAACTTCTAATACCTGTAATAT : 1402520 366 : leArgAlaLysLysProPheLysIleThrAlaGlyLysPheAlaAlaPheSerLeu : 383 !:|||:!!:!!||| !|||! !...||| |||||||||::::::..!|||||| euArgSerGlnLysGlyPheThrPheThrPheGlyLysPheSerSerLeuSerLeu 1402521 : TGAGGTCTCAAAAGGGTTTCACGTttacttttggaaaattttcaagtctCTCCTTG : 1402574 384 : GlyLeuTyrCysSerIle : 389 ! ! !!:! :!!:!! GluSerPheThrAlaVal 1402575 : GAAAGCTTTACGGCCGTA : 1402594 vulgar: NvOr17 327 389 . KQ414716.1 1402408 1402594 + 127 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1402409 1402594 127 + . gene_id 1 ; sequence NvOr17 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1402409 1402594 . + . KQ414716.1 exonerate:protein2genome:local exon 1402409 1402594 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1402409 1402594 127 + . alignment_id 1 ; Query NvOr17 ; Align 1402409 328 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr17 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 336 -> 389 Target range: 1387619 -> 1387778 337 : SerMetGluValGlyAsnAlaAlaTyrGluSerAsnTrpTyrAspLeuProSerCy : 355 ||| ...:!! !.!.:!:...|||... |||||||||||| ! !! ! SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 356 : sGluThrLysLeuLeuMetLeuValIleIleArgAlaLysLysProPheLysIleT : 374 |||.!!::::::::::::|||:::|||:::|||:!!:!!||| !!!.! !:!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 375 : hrAlaGlyLysPheAlaAlaPheSerLeuGlyLeuTyrCysSerIle : 389 ||||||||||||||!.! !.!!||||||!.! !!:!..!!::::: hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: NvOr17 336 389 . KQ414716.1 1387619 1387778 + 102 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387778 102 + . gene_id 2 ; sequence NvOr17 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387778 102 + . alignment_id 2 ; Query NvOr17 ; Align 1387620 337 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr17 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 336 -> 389 Target range: 1395323 -> 1395482 337 : SerMetGluValGlyAsnAlaAlaTyrGluSerAsnTrpTyrAspLeuProSerCy : 355 |||:!:..!:!!.!!||||||||||||...||| !|||||| !||| ! !! SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 356 : sGluThrLysLeuLeuMetLeuValIleIleArgAlaLysLysProPheLysIleT : 374 !!:! ! ! :!!:!!!!:|||:!!!!:||||||:!!:!!!:!! !!!.! !|||| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 375 : hrAlaGlyLysPheAlaAlaPheSerLeuGlyLeuTyrCysSerIle : 389 |||||||||||||| !! !!!.||||||! ! !!:!...!:!:!! hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnVal 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTA : 1395482 vulgar: NvOr17 336 389 . KQ414716.1 1395323 1395482 + 102 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395482 102 + . gene_id 3 ; sequence NvOr17 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395482 102 + . alignment_id 3 ; Query NvOr17 ; Align 1395324 337 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr26 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 337 -> 390 Target range: 1395323 -> 1395482 338 : SerLeuLeuIleCysAsnSerValTyrAsnTyrGlnTrpTyrLysLeuSerAlaGl : 356 ||||||! !||| !!|||:!!!.!|||!:!! ! |||||| |||..! !!|| SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 357 : nAspAlaLysMetLeuIlePheValMetHisArgGlyAspArgProLeuAlaMetT : 375 |||| ! ! !!::!!|||.!!:!!||| |||..!.!.|||! !|||.!!!!:| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 376 : hrAlaGlyLysPheCysAlaPheSerLeuGlnLeuTyrAlaGlnIle : 390 |||||||||||||| ! !!!.||||||:!! !!:!|||.!.:!! hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnVal 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTA : 1395482 vulgar: NvOr26 337 390 . KQ414716.1 1395323 1395482 + 111 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395482 111 + . gene_id 1 ; sequence NvOr26 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395482 111 + . alignment_id 1 ; Query NvOr26 ; Align 1395324 338 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr26 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 340 -> 390 Target range: 1387628 -> 1387778 341 : IleCysAsnSerValTyrAsnTyrGlnTrpTyrLysLeuSerAlaGlnAspAlaLy : 359 ||| .!.||||||||||||::: |||||| ! |||!.! !!!:!!!:|||:: IleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProArgGluAlaAr 1387629 : ATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCGAGAAGCTCg : 1387683 360 : sMetLeuIlePheValMetHisArgGlyAspArgProLeuAlaMetThrAlaGlyL : 378 ::::::::::...:::::: |||..!.!.!:! !||| !:!:|||||||||| gIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuThrAlaGlyL 1387684 : tattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCACTGCGGGCA : 1387740 379 : ysPheCysAlaPheSerLeuGlnLeuTyrAlaGlnIle : 390 ||||| !.!!|||||| !!:!|||.!.::: ysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387741 : AATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: NvOr26 340 390 . KQ414716.1 1387628 1387778 + 109 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387629 1387778 109 + . gene_id 2 ; sequence NvOr26 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387629 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387629 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387629 1387778 109 + . alignment_id 2 ; Query NvOr26 ; Align 1387629 341 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr17 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 336 -> 383 Target range: 1345564 -> 1345705 337 : SerMetGluValGlyAsnAlaAlaTyrGluSerAsnTrpTyrAspLeuProSerCy : 355 ||| |||:!! !.!.|||..!||| |||||||||||||||||||||..! SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 356 : sGluThrLysLeuLeuMetLeuValIleIleArgAlaLysLysProPheLysIleT : 374 ! |||::!! !|||!!:!!! !||| !|||:!!:!!||||||! ! :!!| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 375 : hrAlaGlyLysPheAlaAlaPheSerLeu : 383 |||||||||||||| !!.!||||||||| hrAlaGlyLysPheTyrValPheSerLeu 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTA : 1345705 vulgar: NvOr17 336 383 . KQ414782.1 1345564 1345705 + 122 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345705 122 + . gene_id 1 ; sequence NvOr17 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345705 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345705 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345705 122 + . alignment_id 1 ; Query NvOr17 ; Align 1345565 337 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr20 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 333 -> 383 Target range: 1345564 -> 1345714 334 : SerLeuGlnLeuGlyAsnAlaIlePheTyrSerLysTrpTyrAsnLeuProAlaAs : 352 |||! !:!!:!! !.!.||| !!:!!:!|||!!.||||||:!!||||||! !!! SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 353 : nLysAlaArgLeuLeuIleIleAlaIleLeuArgValGlnLysProLeuGluLeuS : 371 . ! .!!|||! !||||||.!!..!||| !||| !|||||||||! ! ! |||! sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 372 : erAlaGlyLysPheCysIlePheSerLeuAsnLeuPhe : 383 !!||||||||||||! !:!:|||||||||.!. !||| hrAlaGlyLysPheTyrValPheSerLeuGluThrPhe 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTC : 1345714 vulgar: NvOr20 333 383 . KQ414782.1 1345564 1345714 + 119 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345714 119 + . gene_id 1 ; sequence NvOr20 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345714 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345714 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345714 119 + . alignment_id 1 ; Query NvOr20 ; Align 1345565 334 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr18NTE Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 330 -> 380 Target range: 1345564 -> 1345714 331 : SerMetGluIleGlyAsnAlaAlaTyrGlnCysAsnTrpTyrThrLeuProProSe : 349 ||| |||!!: !.!.|||..!||| !!||||||||| !|||||| !!. SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 350 : rGluAlaLysCysLeuThrLeuIleMetIleArgAlaLysGlnProPheGluIleT : 368 ! ! .!!::!! |||! !!!! !!!: !|||:!!:!!:!!|||! ! :!!| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 369 : hrAlaGlyLysPheAlaAlaPheSerLeuGluLeuTyr : 380 |||||||||||||| !!.!|||||||||||| !!:! hrAlaGlyLysPheTyrValPheSerLeuGluThrPhe 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTC : 1345714 vulgar: NvOr18NTE 330 380 . KQ414782.1 1345564 1345714 + 106 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345714 106 + . gene_id 1 ; sequence NvOr18NTE ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345714 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345714 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345714 106 + . alignment_id 1 ; Query NvOr18NTE ; Align 1345565 331 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr18NTE Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 301 -> 377 Target range: 4395112 -> 4395343 302 : GluLeuIlePheMetAlaTyrPheThrCysCysPheThrPheSerLeuPheValTy : 320 !!:|||:!! .!.!.!! !!:! ! !! .!. ! ! ..!|||!!.:!!!: AspLeuLeuLysPheValSerTyrLeuThrSerMetGlyValGlnLeuLeuLeuTr 4395113 : GATCTTCTCAAATTTGTGTCTTATTTAACCTCGATGGGGGTGCAACTTTTGCTATG : 4395167 321 : rCysTyrValAlaGluValLeuArgThrGluSerMetGluIleGlyAsnAlaAlaT : 339 :|||!:: !!.!|||:!!||| ! !||||||:!:|||||||||:!!!.!!.!| pCysTrpProGlyGluIleLeuValGlnGluSerLeuGluIleGlyHisValValT 4395168 : GTGTTGGCCTGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGTCATGTAGTCT : 4395224 340 : yr<->GlnCysAsnTrpTyrThrLeuProProSerGluAlaLysCysLeuThrLeu : 356 || .!. ||||||!.!|||||||||! ! ! !||| ||| !||| yrLeuAsnIleProTrpTyrAsnLeuProProIleTyrGlnLysGlnLeuCysLeu 4395225 : ATCTAAATATACCATGGTACAATTTACCACCGATTTATCAGAAACAACTTTGCCTG : 4395278 357 : IleMetIleArgAlaLysGlnProPheGluIleThrAlaGlyLysPheAlaAlaPh : 375 !!:!!:|||||||||:!!||| !! !...||||||||| !! !||| !.!!!! MetIleIleArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPheGlnThrLe 4395279 : ATGATCATTAGGGCCCAACAGTATTGCAGCATTACGGCATTAACGTTTCAAACGTT : 4395335 376 : eSerLeu : 377 .|||:!! uSerIle 4395336 : GTCTATT : 4395343 vulgar: NvOr18NTE 301 377 . KQ414784.1 4395112 4395343 + 112 M 38 114 G 0 3 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4395113 4395343 112 + . gene_id 1 ; sequence NvOr18NTE ; gene_orientation . KQ414784.1 exonerate:protein2genome:local cds 4395113 4395343 . + . KQ414784.1 exonerate:protein2genome:local exon 4395113 4395343 . + . insertions 3 ; deletions 0 KQ414784.1 exonerate:protein2genome:local similarity 4395113 4395343 112 + . alignment_id 1 ; Query NvOr18NTE ; Align 4395113 302 114 ; Align 4395230 340 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr17 Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 307 -> 391 Target range: 4395112 -> 4395367 308 : GluLeuIlePheMetIleTyrPheThrCysCysPheThrPheSerLeuPheValTy : 326 !!:|||:!! .!.:!:! !!:! ! !! .!. ! ! ..!|||!!.:!!!: AspLeuLeuLysPheValSerTyrLeuThrSerMetGlyValGlnLeuLeuLeuTr 4395113 : GATCTTCTCAAATTTGTGTCTTATTTAACCTCGATGGGGGTGCAACTTTTGCTATG : 4395167 327 : rCysTyrValAlaGluValLeuArgThrGluSerMetGluValGlyAsnAlaAlaT : 345 :|||!:: !!.!|||:!!||| ! !||||||:!:|||:!!|||:!!!.!!.!| pCysTrpProGlyGluIleLeuValGlnGluSerLeuGluIleGlyHisValValT 4395168 : GTGTTGGCCTGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGTCATGTAGTCT : 4395224 346 : yr<->GluSerAsnTrpTyrAspLeuProSerCysGluThrLysLeuLeuMetLeu : 362 || .!.! ! ||||||:!!|||||| !! ! ! !|||! !||| ||| yrLeuAsnIleProTrpTyrAsnLeuProProIleTyrGlnLysGlnLeuCysLeu 4395225 : ATCTAAATATACCATGGTACAATTTACCACCGATTTATCAGAAACAACTTTGCCTG : 4395278 363 : ValIleIleArgAlaLysLysProPheLysIleThrAlaGlyLysPheAlaAlaPh : 381 :!!||||||||||||:!!:!! !! !!..||||||||| !! !||| !.!!!! MetIleIleArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPheGlnThrLe 4395279 : ATGATCATTAGGGCCCAACAGTATTGCAGCATTACGGCATTAACGTTTCAAACGTT : 4395335 382 : eSerLeuGlyLeuTyrCysSerIleLeuArg : 391 .|||:!! ! !! :!!:!! !||| uSerIleHisThrLeuThrAlaValSerArg 4395336 : GTCTATTCACACGTTAACAGCCGTAAGTCGA : 4395367 vulgar: NvOr17 307 391 . KQ414784.1 4395112 4395367 + 109 M 38 114 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4395113 4395367 109 + . gene_id 1 ; sequence NvOr17 ; gene_orientation . KQ414784.1 exonerate:protein2genome:local cds 4395113 4395367 . + . KQ414784.1 exonerate:protein2genome:local exon 4395113 4395367 . + . insertions 3 ; deletions 0 KQ414784.1 exonerate:protein2genome:local similarity 4395113 4395367 109 + . alignment_id 1 ; Query NvOr17 ; Align 4395113 308 114 ; Align 4395230 346 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr23 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 175 Query range: 349 -> 420 Target range: 39965 -> 40256 350 : SerAsnGlnLeuPheArgSerIlePheGlnIleArgTrpTyrAspLeuThrProLysAsp : 369 |||!.! !:!! !!:!||| !!:!.!. !!.!|||||||||||| !!|||||| !! SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 370 : SerArgLeuLeuIleIleIleMetValGlnThrLysLysProIleGluIleThrValGly : 389 :!! !! !|||:!!|||:!:!!: !!::.!!:!! ! !!.!!:!!||||||!.!||| AlaValSerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGly 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGA : 40083 390 : LysPheValProPheSerLeuAspTyrPheCysSer >>>> Target Intron 1 > : 402 |||||| !||||||||||||!!: ||| !:!! 78 bp LysPheSerProPheSerLeuGluLeuPheAsnAla++ 40084 : AAATTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTgt...................... : 40124 403 : >>> ValLeuLysThrSerAlaGlyTyrLeuSerValLeuLeuSerMetLysAspArgL : 420 |||||||||||||||||||||||||||||||||||||||:!!||||||||||||| ++ValLeuLysThrSerAlaGlyTyrLeuSerValLeuLeuAlaMetLysAspArgL 40125 : ...agGTTTTAAAAACGTCTGCTGGATATCTTTCCGTGTTGCTAGCTATGAAAGACAGAC : 40254 421 : eu : 420 || eu 40255 : TG : 40256 vulgar: NvOr23 349 420 . KQ414804.1 39965 40256 + 175 M 52 156 5 0 2 I 0 74 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40256 175 + . gene_id 1 ; sequence NvOr23 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39966 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40256 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40256 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39966 40256 175 + . alignment_id 1 ; Query NvOr23 ; Align 39966 350 156 ; Align 40200 402 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr23 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 348 -> 417 Target range: 51888 -> 52352 349 : GlnSerAsnGlnLeuPheArgSerIlePheGlnIleArgTrpTyrAspLeuThrProLys : 368 |||||| !:!!:!! !!.!:!! !!:!.!. !..!||||||:!!|||:!!|||||| GlnSerValGluIleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLys 51889 : caGAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAA : 51946 369 : AspSerArgLeuLeuIleIleIleMetValGlnThrLysLysProIleGluIleThrVal : 388 :!!:!!!:!||||||:!!||||||||| !!:!.!!!:! !|||:!!:!!||||||!.! AsnAlaLysLeuLeuLeuIleIleMetArgArgAlaArgLeuProLeuGlnIleThrAla 51947 : AATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCA : 52006 389 : GlyLysPheValProPheSerLeuAspTyrPheCysSer >>>> Target Intron : 402 |||!:!|||!.! !!|||!!!||| !:!! ..! 251 bp GlyArgPheAlaThrPheThrLeuMetLeuTyrSerGln++ 52007 : GGTAGATTTGCTACTTTCACTCTGATGCTGTATTCACAGgt................... : 52050 403 : 1 >>>> ValLeuLysThrSerAla<-><->GlyTyrLeuSerValLeuLeuSerMetL : 417 :!!||||||||||||!.! ||||||:!!|||||||||! !:!!|||| ++IleLeuLysThrSerValGlyLysGlyTyrValSerValLeuTyrAlaMetL 52051 : ......agATTTTAAAAACCTCGGTGGGAAAAGGTTATGTTTCTGTTCTATACGCAATGA : 52350 418 : ys : 417 || ys 52351 : AA : 52352 vulgar: NvOr23 348 417 . KQ414804.1 51888 52352 + 140 M 53 159 5 0 2 I 0 247 3 0 2 M 6 18 G 0 6 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51889 52352 140 + . gene_id 2 ; sequence NvOr23 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51889 52047 . + . KQ414804.1 exonerate:protein2genome:local exon 51889 52047 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 52048 52049 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 52048 52298 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 52297 52298 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 52299 52352 . + . KQ414804.1 exonerate:protein2genome:local exon 52299 52352 . + . insertions 6 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51889 52352 140 + . alignment_id 2 ; Query NvOr23 ; Align 51889 349 159 ; Align 52299 402 18 ; Align 52323 408 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr32NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 295 Query range: 237 -> 373 Target range: 51476 -> 52044 238 : LysIleValLysArgHisTyrGluLeuAsnLysTyrAlaGluThrIleGluThrThrPhe : 257 |||:::::: |||! !! ! !:!!:!||||||||||||||| ! !||| LysLeuLeuIleAlaSerTyrAlaCysLeuArgPheAlaGluThrIleGluArgCysPhe 51477 : aaattattaattgcatCGTATGCGTGTCTAAGGTTCGCAGAAACGATAGAGCGTTGTTTC : 51534 258 : AsnLysMetPheLeuAlaGlnIleIleAlaCysIleValGlnPheCysLeuGlnGlyTyr : 277 |||! !|||.!!||| !|||!!::!!!.!|||! !||||||.!.|||!!!||| !!!:! AsnMetMetLeuLeuIleGlnMetLeuGlyCysThrValGlnLeuCysPheGlnCysPhe 51535 : AATATGATGCTTCTGATTCAGATGCTCGGTTGTACCGTTCAGCTATGCTTCCAGTGTTTC : 51594 278 : GlnIleIleSer >>>> Target Intron 1 >>>> IleLeuIleAspLysSerL : 288 ||| !:!!! ! 100 bp !:!! !!!::!!! ! GlnAlaValMet++ ++SerIleAspGluGluIleA 51595 : CAAGCAGTCATGgt.........................agTCAATTGACGAGGAAATAG : 51727 289 : euGluLeuProTyrPheGlnLeuIlePheMetValMetTyrIleSerTyrMetSerLeuA : 308 !||| ! ||||||::::::|||:!!:!!.!.|||:!: !|||:!!! !|||. spGluAsnMetIlePheGlnIleLeuPheLeuLeuPheTyrValValTyrValMetLeuG 51728 : ATGAAAACAtgattttccaaattctctTTTTGCTGTTCTACGTGGTTTACGTGATGCTAC : 51787 309 : spLeuTyrIleTyrCysTyrValAlaGluLysLeuArgGlyLys >>>> Target In : 323 !.|||!:!:!:||||||||||||!.!|||!:!||| !! !:!! 60 b lnLeuPheLeuTyrCysTyrValGlyGluArgLeuSerValGlu++ 51788 : AATTATTCTTGTATTGTTACGTGGGTGAAAGGCTTTCCGTTGAGgt.............. : 51834 324 : tron 2 >>>> SerIleGluIleAlaAspAlaAlaTyrAsnCysLysTrpTyrAsnPh : 338 p |||:!!|||||||||:!!|||||||||:!!! !:!!|||||||||!! ++SerValGluIleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLe 51835 : ...........agAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAATGGTACAATTT : 51937 339 : eGlnLysLysGluValSerAspLeuIleLeuIleMetLysArgAlaGlnTyrProLeuAs : 358 .... !|||.!.!.!!.! |||:!!:!!||||||::!||||||::!! ||||||.! uSerProLysAsnAlaLysLeuLeuLeuIleIleMetArgArgAlaArgLeuProLeuGl 51938 : GTCTCCGAAAAATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGTTACCTCTACA : 51997 359 : pIleThrAlaGlyLysPheCysSerLeuSerLeuArgLeuPheAla : 373 .||||||||||||!:!|||..!!!!!!!!!!|||! !|||!:!:!! nIleThrAlaGlyArgPheAlaThrPheThrLeuMetLeuTyrSer 51998 : AATCACTGCAGGTAGATTTGCTACTTTCACTCTGATGCTGTATTCA : 52044 vulgar: NvOr32NTE 237 373 . KQ414804.1 51476 52044 + 295 M 44 132 5 0 2 I 0 96 3 0 2 M 41 123 5 0 2 I 0 56 3 0 2 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51477 52044 295 + . gene_id 1 ; sequence NvOr32NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51477 51608 . + . KQ414804.1 exonerate:protein2genome:local exon 51477 51608 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51609 51610 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51609 51708 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51707 51708 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 51709 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51709 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 1 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52044 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52044 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51477 52044 295 + . alignment_id 1 ; Query NvOr32NTE ; Align 51477 238 132 ; Align 51709 282 123 ; Align 51892 323 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr32NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 223 Query range: 81 -> 224 Target range: 36527 -> 36956 82 : LysMetPheValLeuArgTyrAspSerAsnValMetArgTyrLeuLeuAspGlnLeuPhe : 101 |||:::... ::: ||| !.!:!: !!:!|||:!!..!|||:!!||| LysLeuIlePheThrIleHisThrSerLeuAlaLeuValPheLeuMetSerGlnIlePhe 36528 : AAACtgattttcacaattcacACGTCTCTAGCGCTAGTATTCTTAATGAGCCAAATATTC : 36585 102 : LysAspTrpLysSerProGlnThrGluSerArgArgAlaThrMetArgAspSerAlaLys : 121 ! |||||| !..!||| !!||| ! !||| !||||||! ! ! !!!|||||| AspAspTrpAlaGluProIleProGluValAspArgHisThrMetLeuLysThrAlaLys 36586 : GACGACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACGATGCTGAAGACCGCGAAA : 36645 122 : SerGlyArgMetIleAlaAlaAlaCysMetGlyIleAlaTyrGlyThrSerAsnValPhe : 141 ! !.!!|||||||||:!! !!.!||| !:!:.!!|||! !! ! ! !.!||| IleSerArgMetIleSerIleValCysSerIleLeuThrTyrValMetValLeuAlaPhe 36646 : ATTAGTCGAATGATATCCATAGTCTGTTCTATCCTGACGTATGTCATGGTTTTGGCCTTC : 36705 142 : PhePheLeuArgLeuIleMetLeuArgGlnLysGlnAlaArgThrGlyHisArgAlaPhe : 161 !!.! |||!:!:!! ! !! !|||!!. :!!..! !..! !!!.!.!. LeuSerLeuGlnIleTrpSerSerMetGlnAsnThrSerGluPheAsnValGlyGlyLeu 36706 : TTGTCACTTCAAATTTGGAGCAGCATGCAAAACACCTCGGAGTTCAACGTAGGAGGACTA : 36765 162 : LeuPheGluSerHisPheProPheAspValPheAsnSerProTrpPheGluValThrTrp : 181 |||.!! !:!! ||||||!:!|||..! !!!.|||||| !:!|||:!!|||||| LeuIleProAlaThrPheProTyrAspThrAsnLysSerProAsnTyrGluIleThrTrp 36766 : CTTATCCCGGCCACATTTCCATACGACACGAATAAAAGTCCTAATTACGAAATTACTTGG : 36825 182 : IleIleGlnAlaPheCysThrPheSerAlaThrThrAlaTyrSerGlyIleAspSerPhe : 201 :!! !||| ! ! ! ||| ! ! !::!.!!! !..!|||||| !!.!!|||!!!||| LeuGlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSerCysPheAspThrPhe 36826 : CTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGATACGTTC : 36885 202 : PheAlaValLeuValLeuHisLeuCysGlyGlnLeuIleIleLeuGlyAspGluLeuAsn : 221 !!||||||||||||||||||:!!||||||||||||! !:!!||| !! !! |||.!. ValAlaValLeuValLeuHisIleCysGlyGlnLeuThrValLeuArgIleAlaLeuGlu 36886 : GTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTCGAG : 36945 222 : SerLeuAla : 224 !:!|||||| AsnLeuAla 36946 : AATCTTGCT : 36956 vulgar: NvOr32NTE 81 224 . KQ414804.1 36527 36956 + 223 M 143 429 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36528 36956 223 + . gene_id 2 ; sequence NvOr32NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36528 36956 . + . KQ414804.1 exonerate:protein2genome:local exon 36528 36956 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36528 36956 223 + . alignment_id 2 ; Query NvOr32NTE ; Align 36528 82 429 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr32NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 194 Query range: 278 -> 389 Target range: 33798 -> 34668 279 : IleIleSerIleLeuIleAspLysSerLeuGluLeuProTyrPheGlnLeuIlePheMet : 298 |||! !..!:!::!!:!!!!:!!...! !! !:!! ! !! ! ||||||:!!|||.!. IleThrGlnValIleLeuGluAsnGluLysGlyIlePheAsnValGlnLeuLeuPhePhe 33799 : ATTACACAGGTGATACTAGAAAACGAGAAAGGAATATTCAACGTGCAATTGCTTTTCTTC : 33856 299 : ValMetTyrIleSerTyrMetSerLeuAspLeuTyrIleTyrCysTyrValAlaGluLys : 318 |||:!!!:!:!!!!!!:!!!: !:!! !!:!!|||||||||||||||:!!!.!|||! ! ValLeuPheValCysPheIleLeuValHisIleTyrIleTyrCysTyrIleGlyGluMet 33857 : GTGCTGTTCGTATGCTTCATCCTTGTACACATCTACATTTATTGTTACATAGGAGAGATG : 33916 319 : LeuArgGlyLys >>>> Target Intron 1 >>>> SerIleGluIleAlaAspA : 329 |||! ! ! ! 454 bp |||! !|||!!:::!:!!: LeuLeuThrHis+- ++SerArgGluMetSerAsnS 33917 : CTACTCACACATgc.........................agAGCAGAGAAATGAGCAATT : 34403 330 : laAlaTyrAsnCysLysTrpTyrAsnPheGlnLysLysGluValSerAspLeuIleLeuI : 349 !!||||||.!.! !!.||||||||| !!..! !|||!.!!.! !|||:!!!!!| erAlaTyrGluSerAsnTrpTyrAsnValSerProProGluAlaLysCysLeuLeuPheI 34404 : CCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCAGAAGCCAAGTGCCTTTTATTTA : 34463 350 : leMetLysArgAlaGlnTyrProLeuAspIleThrAlaGlyLysPheCysSerLeuSerL : 369 ||||| ! |||.!! !|||||| !:!:||||||||||||||| !!!!!!!!|||: leMetHisArgThrAlaArgProLeuCysLeuThrAlaGlyLysPheSerThrPheSerM 34464 : TCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCAGGAAAATTCAGTACCTTCTCCA : 34523 370 : euArgLeuPheAlaIle >>>> Target Intron 2 >>>> IleGlyLysThrSe : 379 !!..!:!!|||::!! ! 83 bp ||| !||||||:! etGluMetPheSerThr++ ++IleLeuLysThrAl 34524 : TGGAAATGTTCAGTACTgt.........................agattcTGAAAACAGC : 34636 380 : rLeuGlyTyrLeuSerMetLeuLeuAlaVal : 389 !:!!||||||||||||:!:||||||.!!||| aMetGlyTyrLeuSerValLeuLeuThrVal 34637 : AATGGGATATCTTTCAGTTCTCCTCACAGTT : 34668 vulgar: NvOr32NTE 278 389 . KQ414804.1 33798 34668 + 194 M 44 132 5 0 2 I 0 450 3 0 2 M 52 156 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33799 34668 194 + . gene_id 3 ; sequence NvOr32NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33799 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33799 33930 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 1 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 1 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34668 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34668 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33799 34668 194 + . alignment_id 3 ; Query NvOr32NTE ; Align 33799 279 132 ; Align 34385 323 156 ; Align 34624 375 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr32NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 143 -> 249 Target range: 44823 -> 45138 144 : LeuArgLeuIleMetLeuArgGlnLysGlnAlaArgThrGlyHisArgAlaPheLeuPhe : 163 :!!! !! !|||.!.|||||| !!:! !.!! !! ! !.!.|||||| IleThrTyrIlePheLeuArgPheLeuThrArgLysTyrSerGlyThrArgLeuLeuPhe 44824 : ATCACTTATATATTTCTACGATTCCTCACCAGGAAGTACAGCGGCACCAGACTACTCTTC : 44881 164 : GluSerHisPheProPheAspValPheAsnSerProTrpPheGluValThrTrpIleIle : 183 ...:!!:!!||||||!:!||| ! ! !|||||| !:!||| !!||| !||| ! ArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThrValIleAla 44882 : CGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACAGTGATTGCT : 44941 184 : GlnAlaPheCysThrPheSerAlaThrThrAlaTyrSerGlyIleAspSerPhePheAla : 203 ||| !.!...!.!!|||! !|||.!!|||.!!|||!!!!.!:!!|||!!!|||.!!!.! GlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThrPheIleVal 44942 : CAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACTTTCATTGTA : 45001 204 : ValLeuValLeuHisLeuCysGlyGlnLeuIleIleLeuGlyAspGluLeuAsnSerLeu : 223 :!!|||:!!||||||:!!|||||||||||| ! !||| !!:!!|||!!!..!!.!||| MetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArgAsnGluPheGlyLysLeu 45002 : ATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGAAACGAATTCGGTAAGCTT : 45061 224 : AlaPheGlnLysAspThrGluGlyIleLysGluAspIleAlaLysIleValLysArgHis : 243 ! ! |||! !! ! !:!!:!!! ! ! :!:!.!|||||||||:!!!:!||| Gln---AlaCysAspLysValThrLeuGlnAlaLysLeuGlyLysIleValGlnLysHis 45062 : CAA---GCATGCGATAAAGTAACATTACAGGCGAAGTTGGGGAAAATCGTGCAGAAACAC : 45118 244 : TyrGluLeuAsnLysTyr : 249 ! ! ||||||!:!!:! GluTyrLeuAsnArgPhe 45119 : GAATATCTTAACAGGTTC : 45138 vulgar: NvOr32NTE 143 249 . KQ414804.1 44823 45138 + 157 M 81 243 G 1 0 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44824 45138 157 + . gene_id 4 ; sequence NvOr32NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44824 45138 . + . KQ414804.1 exonerate:protein2genome:local exon 44824 45138 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 44824 45138 157 + . alignment_id 4 ; Query NvOr32NTE ; Align 44824 144 243 ; Align 45067 226 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr32NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 89 -> 223 Target range: 31113 -> 31521 90 : SerAsnValMetArgTyrLeuLeuAspGlnLeuPheLysAspTrpLysSerProGlnThr : 109 :::.......!.!:! !:!!:!! ! ...!!!!:! ! |||||||||!!! !!::!||| AsnLysAlaPheLysProValIleLysSerPheTyrAspAspTrpLysThrSerArgThr 31114 : aacaaagcttTCAAGCCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACc : 31171 110 : GluSerArgArgAlaThrMetArgAspSerAlaLysSerGlyArgMetIleAlaAlaAla : 129 :::......::: |||||| ! ! !!!||||||! !!.!!:!...|||:!! ! ! LysGluGluLysGluThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIleTrp 31172 : aaggaggagaaggagacCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGG : 31231 130 : CysMetGlyIleAlaTyrGlyThrSerAsnValPhePhePheLeuArgLeuIleMetLeu : 149 ||| ! !:!!.!!! !! ! !!.!|||!:!.!. !|||||| ! !!::!! CysSerValLeuThrLeuThrMetValThrValTyrLeuSerLeuArgAlaTrpIleIle 31232 : TGCTCAGTATTAACCTTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATC : 31291 150 : ArgGln<-><->LysGlnAlaArgThrGlyHisArgAlaPheLeuPheGluSerHisPhe : 167 !||| !:! ! !!:!! ! ! !!||| !.!!|||!:! .!!:!!||| TyrGlnLeuAspArgAlaAsnGlnLysGlnAspArgLeuLeuLeuTyrProGlyTyrPhe 31292 : TACCAGCTTGATAGGGCAAACCAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTATTTT : 31351 168 : ProPheAspValPheAsnSerProTrpPheGluValThrTrpIleIleGlnAlaPheCys : 187 |||||||||:!! ! ! ! ! .!. ! !||| .!! !|||!.!.!!... ProPheAspIleArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeuAla 31352 : CCCTTCGATATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCA : 31411 188 : ThrPheSerAlaThrThrAlaTyrSerGlyIleAspSerPhePheAlaValLeuValLeu : 207 .!!!:!||||||..!! !::!|||!!! !:!:|||!!!|||.!!|||:!!|||:!!:!! AlaTyrSerAlaValIleSerTyrThrThrValAspThrPheIleAlaMetLeuIleMet 31412 : GCGTATTCCGCTGTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATAATG : 31471 208 : HisLeuCysGlyGlnLeuIleIleLeuGlyAspGluLeuAsnSerLeu : 223 |||:!!|||||||||!!! |||||| !!.!.:!!|||...!!!||| HisIleCysGlyGlnPheGluIleLeuArgGlnLysLeuArgArgLeu 31472 : CACATATGCGGACAATTTGAGATACTGAGACAGAAATTACGAAGGCTG : 31521 vulgar: NvOr32NTE 89 223 . KQ414804.1 31113 31521 + 150 M 62 186 G 0 6 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31114 31521 150 + . gene_id 5 ; sequence NvOr32NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31114 31521 . + . KQ414804.1 exonerate:protein2genome:local exon 31114 31521 . + . insertions 6 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 31114 31521 150 + . alignment_id 5 ; Query NvOr32NTE ; Align 31114 90 186 ; Align 31306 152 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr32NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 296 -> 393 Target range: 39887 -> 40256 297 : PheMetValMetTyrIleSerTyrMetSerLeuAspLeuTyrIleTyrCysTyrValAla : 316 ...::::::::: !!:!||| ..!! !..! ! !.!! !! |||:::... IleLeuIleLeuLeu***AsnTyrSerGluProSerSerIlePheAsnThrTyrIleCys 39888 : attttaatattactctGAAATTACTCTGAACCTTCCAGTATTTTCAATACttacatttgc : 39945 317 : GluLysLeuArgGlyLysSerIleGluIleAlaAspAlaAlaTyrAsnCysLysTrpTyr : 336 ::: ... |||! !! !|||!.!.!.:!!||||||:!!|||!!.|||||| LysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyr 39946 : aaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTAC : 40005 337 : AsnPheGlnLysLysGluValSerAspLeuIleLeuIleMetLysArgAlaGlnTyrPro : 356 :!!!!.! ! !|||.!.!.! !...|||:!!:!!:!:!!: ||||||||| !! AspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAlaGlnValSer 40006 : GATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCC : 40065 357 : LeuAspIleThrAlaGlyLysPheCysSerLeuSerLeuArgLeuPheAlaIleIleGly : 376 !!!.!.|||||||||||||||||| !! !!!!!||||||..!|||||| ! !:!:.!! PheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsnAlaValSer 40066 : TTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTGTGAGT : 40125 377 : {L} >>>> Target Intron 1 >>>> {ys}ThrSerLeuGlyTyrLeuSerMet : 385 {:} 78 bp {!!}|||||| !||||||||||||:!! {G}+- +-{ln}ThrSerAlaGlyTyrLeuSerVal 40126 : {C}ga.........................aa{AA}ACGTCTGCTGGATATCTTTCCGTG : 40230 386 : LeuLeuAlaValLysGluArgIle : 393 |||||||||:!!|||!!:|||:!: LeuLeuAlaMetLysAspArgLeu 40231 : TTGCTAGCTATGAAAGACAGACTG : 40256 vulgar: NvOr32NTE 296 393 . KQ414804.1 39887 40256 + 125 M 80 240 S 0 1 5 0 2 I 0 74 3 0 2 S 1 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39888 40256 125 + . gene_id 6 ; sequence NvOr32NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39888 40128 . + . KQ414804.1 exonerate:protein2genome:local exon 39888 40128 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40129 40130 . + . intron_id 1 ; splice_site "GA" KQ414804.1 exonerate:protein2genome:local intron 40129 40206 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40205 40206 . + . intron_id 0 ; splice_site "AA" KQ414804.1 exonerate:protein2genome:local cds 40207 40256 . + . KQ414804.1 exonerate:protein2genome:local exon 40207 40256 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39888 40256 125 + . alignment_id 6 ; Query NvOr32NTE ; Align 39888 297 240 ; Align 40209 378 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr24 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 176 Query range: 336 -> 404 Target range: 34381 -> 34668 337 : GluSerLeuSerIlePheGluAlaAlaTyrSerCysGluTrpTyrAsnLeuSerProGln : 356 :!!||| !..!!!: !.!.:!!||||||..!! .!.|||||||||:!!||||||! ! GlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProPro 34382 : CAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCA : 34439 357 : AspAlaLysMetLeuLeuPheIleMetGlnArgThrLysThrProLeuArgValThrAla : 376 !!:|||||| |||||||||||||||!!.|||||| !|||||| !!:!!|||||| GluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAla 34440 : GAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCA : 34499 377 : GlyLysLeuCysValPheGlyLeuGluLeuPheAlaLys >>>> Target Intron : 390 ||||||!!! !!..!|||..!:!!|||:!!|||::!! 83 bp GlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34500 : GGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt................... : 34543 391 : 1 >>>> IleLeuLysThrAlaGlyGlyTyrLeuSerIleLeuLeuAlaMet : 404 ||||||||||||||| !||||||||||||:!!||||||.!!:!: ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeuThrVal 34544 : ......agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTCACAGTT : 34668 vulgar: NvOr24 336 404 . KQ414804.1 34381 34668 + 176 M 53 159 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34382 34668 176 + . gene_id 1 ; sequence NvOr24 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34382 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34382 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34668 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34668 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34382 34668 176 + . alignment_id 1 ; Query NvOr24 ; Align 34382 337 159 ; Align 34624 390 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr24 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 336 -> 405 Target range: 51888 -> 52352 337 : GluSerLeuSerIlePheGluAlaAlaTyrSerCysGluTrpTyrAsnLeuSerProGln : 356 ::!|||:!!..!||| !.!.|||||||||..!! !|||||||||||||||||||||:!! GlnSerValGluIleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLys 51889 : caGAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAA : 51946 357 : AspAlaLysMetLeuLeuPheIleMetGlnArgThrLysThrProLeuArgValThrAla : 376 :!!||||||:!!||||||.!!||||||!:!|||.!!!:! !||||||!:!:!!|||||| AsnAlaLysLeuLeuLeuIleIleMetArgArgAlaArgLeuProLeuGlnIleThrAla 51947 : AATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCA : 52006 377 : GlyLysLeuCysValPheGlyLeuGluLeuPheAlaLys >>>> Target Intron : 390 |||!:!!!!..!..!||| !||| !|||!:!:!!:!! 251 bp GlyArgPheAlaThrPheThrLeuMetLeuTyrSerGln++ 52007 : GGTAGATTTGCTACTTTCACTCTGATGCTGTATTCACAGgt................... : 52050 391 : 1 >>>> IleLeuLysThrAla<-><->GlyGlyTyrLeuSerIleLeuLeuAlaMetA : 405 ||||||||||||:!! !||||||:!!|||:!!|||! !||||||! ++IleLeuLysThrSerValGlyLysGlyTyrValSerValLeuTyrAlaMetL 52051 : ......agATTTTAAAAACCTCGGTGGGAAAAGGTTATGTTTCTGTTCTATACGCAATGA : 52350 406 : rg : 405 :! ys 52351 : AA : 52352 vulgar: NvOr24 336 405 . KQ414804.1 51888 52352 + 174 M 53 159 5 0 2 I 0 247 3 0 2 M 5 15 G 0 6 M 11 33 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51889 52352 174 + . gene_id 2 ; sequence NvOr24 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51889 52047 . + . KQ414804.1 exonerate:protein2genome:local exon 51889 52047 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 52048 52049 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 52048 52298 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 52297 52298 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 52299 52352 . + . KQ414804.1 exonerate:protein2genome:local exon 52299 52352 . + . insertions 6 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51889 52352 174 + . alignment_id 2 ; Query NvOr24 ; Align 51889 337 159 ; Align 52299 390 15 ; Align 52320 395 33 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr24 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 96 -> 226 Target range: 36557 -> 36944 97 : AlaLeuAlaLeuLeuIleGluPheValGluLysAspTrpLeuAspLeuLysThrIleSer : 116 ||||||!.!!!!|||!!:... :!! ! |||||| !!!:! !! !! ! AlaLeuValPheLeuMetSerGlnIlePheAspAspTrpAlaGluProIleProGluVal 36558 : GCGCTAGTATTCTTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTG : 36615 117 : GluGluGluThrMetGluGlnAsnAlaHisThrAlaAsnLysIleTyrLeuThrCysPhe : 136 !!:....!.|||||| !:!!!.!||| ! ! !::!...! !|||! !:!!..!|||! ! AspArgHisThrMetLeuLysThrAlaLysIleSerArgMetIleSerIleValCysSer 36616 : GATCGCCACACGATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTCTGTTCT : 36675 137 : PheLeuGlyAsnSerAlaValAsnSerTyrThrLeuLeuArgLeuGlyGlnGluMetSer : 156 .!!||| ! !! ! !||| :!!!:! !! !|||!:!:!! !!......|||..! IleLeuThrTyrValMetValLeuAlaPheLeuSerLeuGlnIleTrpSerSerMetGln 36676 : ATCCTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGCAGCATGCAA : 36735 157 : PheLeuProGlyProProAspLysArgGlnProLeuPheAspAlaTyrPheProTyrAsp : 176 ! !!..! ! !:!! ! !! !! !|||.!! ||| |||||||||||| ---AsnThrSerGluPheAsnValGlyGlyLeuLeuIleProAlaThrPheProTyrAsp 36736 : ---AACACCTCGGAGTTCAACGTAGGAGGACTACTTATCCCGGCCACATTTCCATACGAC : 36792 177 : AspLysArgSerProAlaTyrGluIleThrTrpLeuMetGlnTyrAlaGlyIleAlaLeu : 196 !!.!:!|||||| !|||||||||||||||||| |||!:!!.!|||! !!.!||| ThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrValLeu 36793 : ACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTG : 36852 197 : AlaAsnLeuAlaPheThrGlyMetTyrCysLeuPheValGlyLeuMetLeuHisLeuCys : 216 ::! :!!..!!:!:!! !!.!. !! !!! !!!.!! !|||:!!||||||:!!||| SerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHisIleCys 36853 : AGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGC : 36912 217 : GlyGlnPheAlaAsnLeuArgIleLysLeu : 226 ||||||!!..!! !||||||||| ||| GlyGlnLeuThrValLeuArgIleAlaLeu 36913 : GGCCAATTAACTGTTCTCCGCATTGCCCTC : 36944 vulgar: NvOr24 96 226 . KQ414804.1 36557 36944 + 149 M 60 180 G 1 0 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36558 36944 149 + . gene_id 3 ; sequence NvOr24 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36558 36944 . + . KQ414804.1 exonerate:protein2genome:local exon 36558 36944 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 36558 36944 149 + . alignment_id 3 ; Query NvOr24 ; Align 36558 97 180 ; Align 36738 158 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr24 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 167 -> 223 Target range: 44877 -> 45045 168 : LeuPheAspAlaTyrPheProTyrAspAspLysArgSerProAlaTyrGluIleThrTrp : 187 |||||| !||||||||||||||||||..! ! !|||||| !||||||.!!||| ! LeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThrVal 44878 : CTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACAGTG : 44935 188 : LeuMetGlnTyrAlaGlyIleAlaLeuAlaAsnLeuAlaPheThrGlyMetTyrCysLeu : 207 :!! ||| ! !!.! ! !! !||| ! !.!!!:!|||!.!:!: !! !!!! IleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThrPhe 44936 : ATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACTTTC : 44995 208 : PheValGlyLeuMetLeuHisLeuCysGlyGlnPheAlaAsnLeuArg : 223 .!!||| !|||!!:||||||:!!|||||||||.!!:!!||||||||| IleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArg 44996 : ATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGA : 45045 vulgar: NvOr24 167 223 . KQ414804.1 44877 45045 + 125 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44878 45045 125 + . gene_id 4 ; sequence NvOr24 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44878 45045 . + . KQ414804.1 exonerate:protein2genome:local exon 44878 45045 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44878 45045 125 + . alignment_id 4 ; Query NvOr24 ; Align 44878 168 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr24 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 93 -> 262 Target range: 31110 -> 31605 94 : TyrArgLysAlaLeuAlaLeuLeuIleGluPheValGluLysAspTrpLeuAspLeuLys : 113 :::...||||||.!! !! !:!!|||:!!! ! !! ! ! |||||| ! !! !!:! PheAsnLysAlaPheLysProValIleLysSerPheTyrAspAspTrpLysThrSerArg 31111 : tttaacaaagcttTCAAGCCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGG : 31168 114 : ThrIleSerGluGluGluThrMetGluGlnAsnAlaHisThrAlaAsnLysIleTyrLeu : 133 ||| ...|||:::||||||||| !:!!!..||| ! !|||!!.:!!|||! !:!! ThrLysGluGluLysGluThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIle 31169 : ACcaaggaggagaaggagacCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATC : 31228 134 : ThrCysPhePheLeuGlyAsnSerAlaValAsnSerTyrThrLeuLeuArgLeuGlyGln : 153 !|||! ! ||| ! !!! !|||!.! !||| ! !|||||| ! !! TrpCysSerValLeuThrLeuThrMetValThrValTyrLeuSerLeuArgAlaTrpIle 31229 : TGGTGCTCAGTATTAACCTTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATC : 31288 154 : GluMetSerPhe<->LeuProGlyProProAspLysArgGlnProLeuPheAspAlaTyr : 172 ..!.!! ! !!..!! ! !.!. ! |||! !! !|||!:! !!.!||| IleTyrGlnLeuAspArgAlaAsnGlnLysGlnAspArgLeuLeuLeuTyrProGlyTyr 31289 : ATCTACCAGCTTGATAGGGCAAACCAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTAT : 31348 173 : PheProTyrAspAspLysArgSerProAlaTyrGluIleThrTrpLeuMetGlnTyrAla : 192 ||||||!:!||| !:::! !! ! !!.! ! ||| !!! ||| ! PheProPheAspIleArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeu 31349 : TTTCCCTTCGATATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTC : 31408 193 : GlyIleAlaLeuAlaAsnLeuAlaPheThrGlyMetTyrCysLeuPheValGlyLeuMet : 212 !.! !! !||| !:!!::!!:!||| !:!! !! !!!.!!!.! !|||!!: AlaAlaTyrSerAlaValIleSerTyrThrThrValAspThrPheIleAlaMetLeuIle 31409 : GCAGCGTATTCCGCTGTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATA : 31468 213 : LeuHisLeuCysGlyGlnPheAlaAsnLeuArgIleLysLeuIleGluAlaValSerArg : 232 :!!|||:!!||||||||||||! !! |||||| |||||| ||| MetHisIleCysGlyGlnPheGluIleLeuArgGlnLysLeu---------------Arg 31469 : ATGCACATATGCGGACAATTTGAGATACTGAGACAGAAATTA---------------CGA : 31513 233 : LysGluGlyGluSerGluLysLysSerAspGlyAlaLysThrPheArgGluArgLeuAla : 252 !:! ! !!!:..!|||||||||!!! .!!!.! ! !.!!!:!:!!..!|||!.! ArgLeuMetAspAspGluLysLysThrArgSerValAspGluIleGlnLysGluLeuVal 31514 : AGGCTGATGGATGACGAGAAGAAGACCAGAAGCGTGGATGAGATTCAGAAGGAGCTGGTT : 31573 253 : PheIleValGluArgHisAsnSerLeuAsn : 262 !!.|||:!!|||||||||.!. !|||||| LeuIleIleGluArgHisGluHisLeuAsn 31574 : TTGATCATAGAGAGGCATGAGCATCTAAAT : 31605 vulgar: NvOr24 93 262 . KQ414804.1 31110 31605 + 118 M 64 192 G 0 3 M 69 207 G 5 0 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31111 31605 118 + . gene_id 5 ; sequence NvOr24 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31111 31605 . + . KQ414804.1 exonerate:protein2genome:local exon 31111 31605 . + . insertions 3 ; deletions 5 KQ414804.1 exonerate:protein2genome:local similarity 31111 31605 118 + . alignment_id 5 ; Query NvOr24 ; Align 31111 94 192 ; Align 31306 158 207 ; Align 31513 232 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr17 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 214 Query range: 285 -> 389 Target range: 51678 -> 52050 286 : ValLeuCysLeuGlnGlyTyrGlnLeuValMetIleThrThrAlaGlyAspGlyIlePro : 305 :::::: ... ...:::...||| ! ||| ! !! ! !|||! !! ! IleIlePhePheThrAsnPheAspLeu***SerIleAspGluGluIleAspGluAsnMet 51679 : atcatatttttcacgaattttgaTTTGTAGTCAATTGACGAGGAAATAGATGAAAACAtg : 51736 306 : LeuPheGluLeuIlePheMetIleTyrPheThrCysCysPheThrPheSerLeuPheVal : 325 :::|||:::::::::|||:!!:!:!:!!:!..! !! ! ! ! !.!...!||||||:!! IlePheGlnIleLeuPheLeuLeuPheTyrValValTyrValMetLeuGlnLeuPheLeu 51737 : attttccaaattctctTTTTGCTGTTCTACGTGGTTTACGTGATGCTACAATTATTCTTG : 51796 326 : TyrCysTyrValAlaGluValLeuArgThrGlu >>>> Target Intron 1 >>>> : 337 ||||||||||||!.!||| !||| !..!||| 60 bp TyrCysTyrValGlyGluArgLeuSerValGlu++ 51797 : TATTGTTACGTGGGTGAAAGGCTTTCCGTTGAGgt......................... : 51834 338 : SerMetGluValGlyAsnAlaAlaTyrGluSerAsnTrpTyrAspLeuProSerCysG : 356 |||:!:|||:!!!.!||||||||||||!!:|||.!.||||||:!!||| !! !! . ++SerValGluIleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLysA 51835 : agAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAAA : 51949 357 : luThrLysLeuLeuMetLeuValIleIleArgAlaLysLysProPheLysIleThrAlaG : 376 !..!!|||||||||:!::!!:!!!!: !||||||!:! !|||.!.:!!|||||||||| snAlaLysLeuLeuLeuIleIleMetArgArgAlaArgLeuProLeuGlnIleThrAlaG 51950 : ATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCAG : 52009 377 : lyLysPheAlaAlaPheSerLeuGlyLeuTyrCysSerIle : 389 ||!:!||||||.!!|||!!!||| !||||||! ..!:!: lyArgPheAlaThrPheThrLeuMetLeuTyrSerGlnVal 52010 : GTAGATTTGCTACTTTCACTCTGATGCTGTATTCACAGGTa : 52050 vulgar: NvOr17 285 389 . KQ414804.1 51678 52050 + 214 M 51 153 5 0 2 I 0 56 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51679 52050 214 + . gene_id 1 ; sequence NvOr17 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51679 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51679 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52050 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52050 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51679 52050 214 + . alignment_id 1 ; Query NvOr17 ; Align 51679 286 153 ; Align 51892 337 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr17 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 195 Query range: 327 -> 407 Target range: 39938 -> 40256 328 : TyrValAlaGluValLeuArgThrGluSerMetGluValGlyAsnAlaAlaTyrGluSer : 347 |||:::...:::::: ... |||! ! !:!!|||.!.:!!||||||!!:!!! TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 348 : AsnTrpTyrAspLeuProSerCysGluThrLysLeuLeuMetLeuValIleIleArgAla : 367 |||||||||||||||||| !! .!..!! ! !|||:!::!!|||||| !|||||| AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 368 : LysLysProPheLysIleThrAlaGlyLysPheAlaAlaPheSerLeuGlyLeuTyrCys : 387 :!! ! !!|||:!!||||||||||||||||||::! !!|||||||||! !|||!:! ! GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsn 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAAC : 40116 388 : Ser >>>> Target Intron 1 >>>> IleLeuArgSerSerGlyGlyTyrLeuS : 398 :!! 78 bp :!!|||!:!!!!|||!.!|||||||||| Ala++ ++ValLeuLysThrSerAlaGlyTyrLeuS 40117 : GCTgt.........................agGTTTTAAAAACGTCTGCTGGATATCTTT : 40227 399 : erMetLeuLeuAlaMetLysAspArgLeu : 407 ||:!!|||||||||||||||||||||||| erValLeuLeuAlaMetLysAspArgLeu 40228 : CCGTGTTGCTAGCTATGAAAGACAGACTG : 40256 vulgar: NvOr17 327 407 . KQ414804.1 39938 40256 + 195 M 61 183 5 0 2 I 0 74 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40256 195 + . gene_id 2 ; sequence NvOr17 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39939 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40256 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40256 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40256 195 + . alignment_id 2 ; Query NvOr17 ; Align 39939 328 183 ; Align 40200 389 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr17 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 183 Query range: 172 -> 268 Target range: 36764 -> 37052 173 : LeuTyrMetSerAlaGlnPhePheTyrAspAlaGlnLysSerProAsnTyrGluIleHis : 192 ||| !!!: !!||| !||| ||||||.!!.!.||||||||||||||||||||| ! LeuLeuIleProAlaThrPheProTyrAspThrAsnLysSerProAsnTyrGluIleThr 36765 : CTACTTATCCCGGCCACATTTCCATACGACACGAATAAAAGTCCTAATTACGAAATTACT : 36822 193 : TrpLeuPheGlnCysSerSerThrIlePheAlaAlaSerAlaPheSerSerValAspAla : 212 |||||| |||! ! !.!!|||:!:!!.::!|||! !..!!:!|||!!! !!|||.!! TrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSerCysPheAspThr 36823 : TGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGATACG : 36882 213 : PhePheAlaValLeuMetLeuHisLeuCysGlyGlnLeuAsnAsnLeuArgGluLysLeu : 232 ||| !!|||||||||:!!||||||:!!||||||||||||!.! !|||||| ||| PheValAlaValLeuValLeuHisIleCysGlyGlnLeuThrValLeuArgIleAlaLeu 36883 : TTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTC : 36942 233 : LysLysLeuProLysGlnIleSerAspLysGlyGlyGlySerPheValGluLysLeuSer : 252 :!!!!.||| !!!!. !! !! ! ! ! ..! !.!!!.!||| !|||::!|||.!! GluAsnLeuAlaAsnThrThrIleLysAspAsnTyrSerLysPheGlnGluArgLeuGly 36943 : GAGAATCTTGCTAACACGACAATAAAAGACAACTACAGCAAGTTCCAAGAACGATTAGGA : 37002 253 : GluIleValThrArgHisAspHisLeuAspArgPheGlyAsnAlaIle : 268 ! |||||| !|||!!.:!!!!.||| !|||! |||...||| TyrIleValHisArgGlnAsnGlnLeuPheArg***MetAsnThrIle 37003 : TACATTGTGCACAGGCAGAATCAATTGTTCAGGTGAATgaatacgatt : 37052 vulgar: NvOr17 172 268 . KQ414804.1 36764 37052 + 183 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36765 37052 183 + . gene_id 3 ; sequence NvOr17 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36765 37052 . + . KQ414804.1 exonerate:protein2genome:local exon 36765 37052 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36765 37052 183 + . alignment_id 3 ; Query NvOr17 ; Align 36765 173 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr17 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 17 -> 92 Target range: 44140 -> 44362 18 : LeuArgPheLeuGlyValTrpProAspProLysArgLysGluSerTrpIleTyrSerGly : 37 :!!||||||:!!|||:!!||||||::: :::|||||| ::! !! ||| ! MetArgPheMetGlyIleTrpProGlu---GluArgLysTrpAsnGlnProSerSerTyr 44141 : ATGAGGTTCATGGGAATCTGGCCagag---gaaagaaaatggaaCCAACCATCGAGTTAC : 44195 38 : HisPheLeuIleProAlaIleValMetPheTyrPheValAsnIleProGlnThrMetMet : 57 ! !|||||||||!.!:!!:!!|||||| !|||||| !:!!|||||||||!!:! LeuAlaLeuIleProValLeuMetMetPheLeuPheValCysValProGlnThrIleAsn 44196 : CTAGCTCTAATACCAGTTCTCATGATGTTTCTCTTCGTTTGTGTCCCACAAACGATCAAT : 44255 58 : ValThrLysValTrpGlyAspLeuAsnAlaValLeuGluValLeuThrThrSerAspIle : 77 :!!:!! :!!|||||||||!!!||| !|||:!!||| !|||:!!! !.!!:!!||| LeuSerPheIleTrpGlyAspPheAsnLeuValValGluAsnLeuSerMetGlyAsnIle 44256 : CTTTCATTCATCTGGGGTGATTTTAATTTAGTGGTAGAGAATCTATCCATGGGTAACATA : 44315 78 : ProIleGlyIleAlaLeuPheLysMetLeuGlyIleTrpTyrAsn : 92 !!||| !|||:!!|||.!.|||! :!!!.!.!!||| !||| ThrIleThrIleSerLeuLeuLysThrIleAlaPheTrpIleAsn 44316 : ACAATCACTATTTCCCTTCTGAAGACCATCGCTTTTTGGATCAAC : 44362 vulgar: NvOr17 17 92 . KQ414804.1 44140 44362 + 156 M 9 27 G 1 0 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44141 44362 156 + . gene_id 4 ; sequence NvOr17 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44141 44362 . + . KQ414804.1 exonerate:protein2genome:local exon 44141 44362 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 44141 44362 156 + . alignment_id 4 ; Query NvOr17 ; Align 44141 18 27 ; Align 44168 28 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr17 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 335 -> 403 Target range: 34381 -> 34668 336 : GluSerMetGluValGlyAsnAlaAlaTyrGluSerAsnTrpTyrAspLeuProSerCys : 355 :!!|||! |||:!!.!!|||:!!|||||||||||||||||||||:!!:!! !! !! GlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProPro 34382 : CAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCA : 34439 356 : GluThrLysLeuLeuMetLeuValIleIleArgAlaLysLysProPheLysIleThrAla : 375 |||.!!|||! !|||:!:!!!:!!!!: !|||.!! :::|||.!! :!:|||||| GluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAla 34440 : GAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCA : 34499 376 : GlyLysPheAlaAlaPheSerLeuGlyLeuTyrCysSer >>>> Target Intron : 389 |||||||||::!.!!||||||:!!! !:!!!:! !!!!! 83 bp GlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34500 : GGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt................... : 34543 390 : 1 >>>> IleLeuArgSerSerGlyGlyTyrLeuSerMetLeuLeuAlaMet : 403 ||||||!:!!!!:!! !||||||||||||:!:||||||.!!:!: ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeuThrVal 34544 : ......agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTCACAGTT : 34668 vulgar: NvOr17 335 403 . KQ414804.1 34381 34668 + 154 M 53 159 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34382 34668 154 + . gene_id 5 ; sequence NvOr17 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34382 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34382 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34668 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34668 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34382 34668 154 + . alignment_id 5 ; Query NvOr17 ; Align 34382 336 159 ; Align 34624 389 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr17 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 172 -> 264 Target range: 44874 -> 45138 173 : LeuTyrMetSerAlaGlnPhePheTyrAspAlaGlnLysSerProAsnTyrGluIleHis : 192 ||| !.!. !!||| ! ||| !||||||::!.!. |||||||||||||||.!! LeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThr 44875 : CTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACA : 44932 193 : TrpLeuPheGlnCysSerSerThrIlePheAlaAlaSerAlaPheSerSerValAspAla : 212 !:!! !||| !! !:!!.!!.!!!:!||||||!!!.!!!:!!!!:!!||||||.!! ValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThr 44933 : GTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACT : 44992 213 : PhePheAlaValLeuMetLeuHisLeuCysGlyGlnLeuAsnAsnLeuArgGluLysLeu : 232 |||.!!!.!:!!|||!!:||||||:!!||||||||||||:::|||||||||.!.:!!!!! PheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArgAsnGluPhe 44993 : TTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGAAACGAATTC : 45052 233 : LysLysLeuProLysGlnIleSerAspLysGlyGlyGlySerPheValGluLysLeuSer : 252 |||||| ||| !!!!|||||| ! !!!!!!. !! !||||||.!! GlyLysLeu------GlnAlaCysAspLys------ValThrLeuGlnAlaLysLeuGly 45053 : GGTAAGCTT------CAAGCATGCGATAAA------GTAACATTACAGGCGAAGTTGGGG : 45100 253 : GluIleValThrArgHisAspHisLeuAspArgPhe : 264 :!!|||||| !!:!|||!!::!!|||:!!|||||| LysIleValGlnLysHisGluTyrLeuAsnArgPhe 45101 : AAAATCGTGCAGAAACACGAATATCTTAACAGGTTC : 45138 vulgar: NvOr17 172 264 . KQ414804.1 44874 45138 + 150 M 63 189 G 2 0 M 5 15 G 2 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44875 45138 150 + . gene_id 6 ; sequence NvOr17 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44875 45138 . + . KQ414804.1 exonerate:protein2genome:local exon 44875 45138 . + . insertions 0 ; deletions 4 KQ414804.1 exonerate:protein2genome:local similarity 44875 45138 150 + . alignment_id 6 ; Query NvOr17 ; Align 44875 173 189 ; Align 45064 238 15 ; Align 45079 245 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr17 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 195 -> 262 Target range: 31401 -> 31605 196 : GlnCysSerSerThrIlePheAlaAlaSerAlaPheSerSerValAspAlaPhePheAla : 215 ||| !:!!.!! !! !|||!.!! !::!!:!!!!!!!||||||.!!|||.!!||| GlnValLeuAlaAlaTyrSerAlaValIleSerTyrThrThrValAspThrPheIleAla 31402 : CAAGTGCTCGCAGCGTATTCCGCTGTTATCAGTTACACCACCGTGGATACATTTATCGCG : 31459 216 : ValLeuMetLeuHisLeuCysGlyGlnLeuAsnAsnLeuArgGluLysLeuLysLysLeu : 235 :!!|||!!::!!|||:!!|||||||||!!!.!.! ||||||:!!||||||::!!:!||| MetLeuIleMetHisIleCysGlyGlnPheGluIleLeuArgGlnLysLeuArgArgLeu 31460 : ATGCTGATAATGCACATATGCGGACAATTTGAGATACTGAGACAGAAATTACGAAGGCTG : 31519 236 : <->ProLysGlnIleSerAspLysGlyGlyGlySerPheValGluLysLeuSerGluIle : 254 ! ! :!!! !.! !!:!.!!! !! !..!.!! !:!!:!!||| ! !||| MetAspAspGluLysLysThrArgSerValAspGluIleGlnLysGluLeuValLeuIle 31520 : ATGGATGACGAGAAGAAGACCAGAAGCGTGGATGAGATTCAGAAGGAGCTGGTTTTGATC : 31579 255 : ValThrArgHisAspHisLeuAsp : 262 :!! !||||||!!:||||||:!! IleGluArgHisGluHisLeuAsn 31580 : ATAGAGAGGCATGAGCATCTAAAT : 31605 vulgar: NvOr17 195 262 . KQ414804.1 31401 31605 + 100 M 40 120 G 0 3 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31402 31605 100 + . gene_id 7 ; sequence NvOr17 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31402 31605 . + . KQ414804.1 exonerate:protein2genome:local exon 31402 31605 . + . insertions 3 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 31402 31605 100 + . alignment_id 7 ; Query NvOr17 ; Align 31402 196 120 ; Align 31525 236 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr20 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 208 Query range: 301 -> 403 Target range: 51735 -> 52358 302 : IleLeuValGluLeuIlePheMetValTyrPheIleIleCysSerSerCysSerIlePhe : 321 !::::: :::::::::|||:!!:!!!:!!:!:!::!!! ! !! ! ..!:!!||| MetIlePheGlnIleLeuPheLeuLeuPheTyrValValTyrValMetLeuGlnLeuPhe 51736 : AtgattttccaaattctctTTTTGCTGTTCTACGTGGTTTACGTGATGCTACAATTATTC : 51793 322 : ValTyrCysTyrValAlaGluIleLeuArgGluGlu >>>> Target Intron 1 > : 334 :!!||||||||||||!.!|||! ||| !! ||| 60 bp LeuTyrCysTyrValGlyGluArgLeuSerValGlu++ 51794 : TTGTATTGTTACGTGGGTGAAAGGCTTTCCGTTGAGgt...................... : 51834 335 : >>> SerLeuGlnLeuGlyAsnAlaIlePheTyrSerLysTrpTyrAsnLeuProAlaA : 352 |||:!!:!!:!!!.!|||||| !!:! !!|||:!!|||||||||||| !! !!! ++SerValGluIleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProL 51835 : ...agAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGA : 51946 353 : snLysAlaArgLeuLeuIleIleAlaIleLeuArgValGlnLysProLeuGluLeuSerA : 372 !.!!.|||!:!||||||:!!||| !!!:! !|||!.!::! !||||||:!!:!!!!!| ysAsnAlaLysLeuLeuLeuIleIleMetArgArgAlaArgLeuProLeuGlnIleThrA 51947 : AAAATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTG : 52006 373 : laGlyLysPheCysIlePheSerLeuAsnLeuPheCysAsn >>>> Target Intro : 386 |||||!:!|||..!! !|||!!!|||! |||!:!! .!. 251 bp laGlyArgPheAlaThrPheThrLeuMetLeuTyrSerGln++ 52007 : CAGGTAGATTTGCTACTTTCACTCTGATGCTGTATTCACAGgt................. : 52050 387 : n 2 >>>> IleValLysThrSerAla<-><->GlyTyrIleSerValLeuLeuAlaVa : 400 |||:!!|||||||||!.! ||||||:!!|||||||||! !|||:! ++IleLeuLysThrSerValGlyLysGlyTyrValSerValLeuTyrAlaMe 52051 : ........agATTTTAAAAACCTCGGTGGGAAAAGGTTATGTTTCTGTTCTATACGCAAT : 52347 401 : lArgAspLys : 403 !!:! !!||| tLysTyrLys 52348 : GAAATATAAA : 52358 vulgar: NvOr20 301 403 . KQ414804.1 51735 52358 + 208 M 32 96 5 0 2 I 0 56 3 0 2 M 52 156 5 0 2 I 0 247 3 0 2 M 6 18 G 0 6 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51736 52358 208 + . gene_id 1 ; sequence NvOr20 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51736 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51736 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52047 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52047 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 52048 52049 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 52048 52298 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 52297 52298 . + . intron_id 1 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 52299 52358 . + . KQ414804.1 exonerate:protein2genome:local exon 52299 52358 . + . insertions 6 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51736 52358 208 + . alignment_id 1 ; Query NvOr20 ; Align 51736 302 96 ; Align 51892 334 156 ; Align 52299 386 18 ; Align 52323 392 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr20 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 189 Query range: 292 -> 400 Target range: 33807 -> 34668 293 : ValIleLeuIleSerSerGlnLysValIleLeuValGluLeuIlePheMetValTyrPhe : 312 ||||||||| !!:!..!:!! !:!!.!! !|||:!!|||:!!|||.!.||| ||| ValIleLeuGluAsnGluLysGlyIlePheAsnValGlnLeuLeuPhePheValLeuPhe 33808 : GTGATACTAGAAAACGAGAAAGGAATATTCAACGTGCAATTGCTTTTCTTCGTGCTGTTC : 33865 313 : IleIleCysSerSerCysSerIlePheValTyrCysTyrValAlaGluIleLeuArgGlu : 332 :!! !! !! ! ! !|||!:!:!!|||||||||:!!!.!|||!!:|||! ! ! ValCysPheIleLeuValHisIleTyrIleTyrCysTyrIleGlyGluMetLeuLeuThr 33866 : GTATGCTTCATCCTTGTACACATCTACATTTATTGTTACATAGGAGAGATGCTACTCACA : 33925 333 : Glu >>>> Target Intron 1 >>>> SerLeuGlnLeuGlyAsnAlaIlePheT : 343 .!. 454 bp ||| !:!!:!!.!!|||:!! !!:! His+- ++SerArgGluMetSerAsnSerAlaTyrG 33926 : CATgc.........................agAGCAGAGAAATGAGCAATTCCGCTTACG : 34412 344 : yrSerLysTrpTyrAsnLeuProAlaAsnLysAlaArgLeuLeuIleIleAlaIleLeuA : 363 ! |||!!.|||||||||:!! !! !! :!!|||!:!! !|||:!!.!! !!!:! !| luSerAsnTrpTyrAsnValSerProProGluAlaLysCysLeuLeuPheIleMetHisA 34413 : AGTCAAACTGGTACAACGTCTCACCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACA : 34472 364 : rgValGlnLysProLeuGluLeuSerAlaGlyLysPheCysIlePheSerLeuAsnLeuP : 383 ||..! :::|||||| |||!!!|||||||||||| !!! !||||||:!!.!.:!!| rgThrAlaArgProLeuCysLeuThrAlaGlyLysPheSerThrPheSerMetGluMetP 34473 : GAACCGCTCGTCCACTTTGCTTGACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGT : 34532 384 : heCysAsn >>>> Target Intron 2 >>>> IleValLysThrSerAlaGlyTy : 393 || !!!.! 83 bp |||:!!||||||:!! !||||| heSerThr++ ++IleLeuLysThrAlaMetGlyTy 34533 : TCAGTACTgt.........................agattcTGAAAACAGCAATGGGATA : 34645 394 : rIleSerValLeuLeuAlaVal : 400 |:!!||||||||||||.!!||| rLeuSerValLeuLeuThrVal 34646 : TCTTTCAGTTCTCCTCACAGTT : 34668 vulgar: NvOr20 292 400 . KQ414804.1 33807 34668 + 189 M 41 123 5 0 2 I 0 450 3 0 2 M 52 156 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33808 34668 189 + . gene_id 2 ; sequence NvOr20 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33808 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33808 33930 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 1 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 1 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34668 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34668 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33808 34668 189 + . alignment_id 2 ; Query NvOr20 ; Align 33808 293 123 ; Align 34385 334 156 ; Align 34624 386 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr20 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 171 -> 265 Target range: 44874 -> 45147 172 : LeuTyrTyrThrGlyLysPheProTyrAspAlaGlnSerSerProAsnPheGluIleThr : 191 ||| !!:! !!.! ! ||||||||||||::!.!. !|||||||||!:!|||.!!||| LeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThr 44875 : CTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACA : 44932 192 : TrpValMetGlnIleLeuAlaThrIleLeuAlaAlaGlySerPheMetAlaValAspAla : 211 !:!! ||||||:!!|||.!!.!!! !|||||| !!!!!:!! |||||||||.!! ValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThr 44933 : GTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACT : 44992 212 : LeuPheValThrLeuValLeuHisLeuCysAlaGlnLeuThrAsnLeuGlnThrAlaPhe : 231 !!!.!!|||! !|||:!!||||||:!!|||!.!||||||:!!||||||::!!.!! !||| PheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArgAsnGluPhe 44993 : TTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGAAACGAATTC : 45052 232 : ArgLysIleGlyGluAspLysHisGluLysGluValAspPheMetSerLysLeuSerLys : 251 !!|||:!! :!! ! :!!||| !!...!:!!||||||.!!||| GlyLysLeu---------GlnAlaCysAspLysValThrLeuGlnAlaLysLeuGlyLys 45053 : GGTAAGCTT---------CAAGCATGCGATAAAGTAACATTACAGGCGAAGTTGGGGAAA : 45103 252 : LeuMetLysArgHisArgLysIleAsnGluPheAlaAspIle : 265 :!!:!!:!!!:!|||..! ! :!!|||..!|||!.!...:!: IleValGlnLysHisGluTyrLeuAsnArgPheValSerLeu 45104 : ATCGTGCAGAAACACGAATATCTTAACAGGTTCGTATCATTG : 45147 vulgar: NvOr20 171 265 . KQ414804.1 44874 45147 + 164 M 63 189 G 3 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44875 45147 164 + . gene_id 3 ; sequence NvOr20 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44875 45147 . + . KQ414804.1 exonerate:protein2genome:local exon 44875 45147 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 44875 45147 164 + . alignment_id 3 ; Query NvOr20 ; Align 44875 172 189 ; Align 45064 238 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr20 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 171 -> 234 Target range: 36764 -> 36953 172 : LeuTyrTyrThrGlyLysPheProTyrAspAlaGlnSerSerProAsnPheGluIleThr : 191 ||| ! ! !!!.!! !||||||||||||.!!.!.!.!|||||||||!:!||||||||| LeuLeuIleProAlaThrPheProTyrAspThrAsnLysSerProAsnTyrGluIleThr 36765 : CTACTTATCCCGGCCACATTTCCATACGACACGAATAAAAGTCCTAATTACGAAATTACT : 36822 192 : TrpValMetGlnIleLeuAlaThrIleLeuAlaAlaGlySerPheMetAlaValAspAla : 211 |||:!! |||.!!:!!!.!|||:!:|||::!||| !!!!!:! ..! !!|||.!! TrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSerCysPheAspThr 36823 : TGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGATACG : 36882 212 : LeuPheValThrLeuValLeuHisLeuCysAlaGlnLeuThrAsnLeuGlnThrAlaPhe : 231 !!! !!!.!..!||||||||||||:!!|||!.!||||||||| !|||!::! !|||.!! PheValAlaValLeuValLeuHisIleCysGlyGlnLeuThrValLeuArgIleAlaLeu 36883 : TTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTC : 36942 232 : ArgLysIle : 234 ..!!!.:!! GluAsnLeu 36943 : GAGAATCTT : 36953 vulgar: NvOr20 171 234 . KQ414804.1 36764 36953 + 145 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36765 36953 145 + . gene_id 4 ; sequence NvOr20 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36765 36953 . + . KQ414804.1 exonerate:protein2genome:local exon 36765 36953 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36765 36953 145 + . alignment_id 4 ; Query NvOr20 ; Align 36765 172 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr26 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 336 -> 404 Target range: 34381 -> 34668 337 : GluSerLeuLeuIleCysAsnSerValTyrAsnTyrGlnTrpTyrLysLeuSerAlaGln : 356 :!!||| ! !!!: !!||||||!.!|||.!.! .!.||||||!!.:!!||| !!! ! GlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProPro 34382 : CAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCA : 34439 357 : AspAlaLysMetLeuIlePheValMetHisArgGlyAspArgProLeuAlaMetThrAla : 376 !!:|||||| |||:!!|||:!!||||||||| !! !|||||||||..!:!!|||||| GluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAla 34440 : GAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCA : 34499 377 : GlyLysPheCysAlaPheSerLeuGlnLeuTyrAlaGln >>>> Target Intron : 390 ||||||||| !!.!!||||||:!!:!!:!!!:!::! 83 bp GlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34500 : GGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt................... : 34543 391 : 1 >>>> IleLeuLysThrSerGlyGlyTyrLeuSerMetLeuLeuAlaLeu : 404 ||||||||||||:!! !||||||||||||:!:||||||.!!:!! ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeuThrVal 34544 : ......agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTCACAGTT : 34668 vulgar: NvOr26 336 404 . KQ414804.1 34381 34668 + 170 M 53 159 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34382 34668 170 + . gene_id 1 ; sequence NvOr26 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34382 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34382 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34668 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34668 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34382 34668 170 + . alignment_id 1 ; Query NvOr26 ; Align 34382 337 159 ; Align 34624 390 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr26 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 100 -> 230 Target range: 36569 -> 36953 101 : LeuLeuAlaLeuAlaIleGlyAspTrpCysThrLysLysThrGluGluGluThrAlaAsn : 120 |||:!!::!! ! !.!!! !||||||... ! !! !!|||! !!!: ! !!.. LeuMetSerGlnIlePheAspAspTrpAlaGluProIleProGluValAspArgHisThr 36570 : TTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACG : 36627 121 : MetCysAlaAsnAlaArgLeuAlaHisArgIleSerMetIleCysValPheLeuAlaGly : 140 ||| !!.!|||!:!:!!::!!..! !||||||!!::!!||| !.!!|||.!! MetLeuLysThrAlaLysIleSerArgMetIleSerIleValCysSerIleLeuThr--- 36628 : ATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTCTGTTCTATCCTGACG--- : 36687 141 : GlyThrValSerIleHisAlaValLeuArgThrCysGlnGluLeuAspIleMetProGly : 160 !|||! !:!! ||| !!||| ! ! ! !..!!!:... ! ! ---TyrValMetValLeuAlaPheLeuSerLeuGlnIleTrpSerSerMetGlnAsnThr 36688 : ---TATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGCAGCATGCAAAACACC : 36741 161 : ProProGluLysArgLeuProLeuPheSerSerSerTyrValProTyrAspTyrLysSer : 180 !! ! !!. ! ! !|||.!!! ! !!:!! !!||||||||| !!.!.! SerGluPheAsnValGlyGlyLeuLeuIleProAlaThrPheProTyrAspThrAsnLys 36742 : TCGGAGTTCAACGTAGGAGGACTACTTATCCCGGCCACATTTCCATACGACACGAATAAA : 36801 181 : SerProIleTyrGlnValThrTrpLeuMetGlnLeuThrGlyThrSerCysAlaThrLeu : 200 ||||||! !|||:!!:!!||||||||| |||!!!..!|||||| !! ::!.!!:!! SerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrValLeuSerAlaIle 36802 : AGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATA : 36861 201 : ValPheSerGlyValTyrCysAlaPheValGlyMetValLeuHisLeuArgGlyGlnVal : 220 !!:!||| !! !! !! ! !!!.!! !:!:|||||||||:!! !!||||||:!! CysTyrSerCysPheAspThrPheValAlaValLeuValLeuHisIleCysGlyGlnLeu 36862 : TGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTA : 36921 221 : AlaAsnLeuArgLeuLysLeuGluAsnIle : 230 .!! !||||||:!! |||||||||:!! ThrValLeuArgIleAlaLeuGluAsnLeu 36922 : ACTGTTCTCCGCATTGCCCTCGAGAATCTT : 36953 vulgar: NvOr26 100 230 . KQ414804.1 36569 36953 + 117 M 39 117 G 2 0 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36570 36953 117 + . gene_id 2 ; sequence NvOr26 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36570 36953 . + . KQ414804.1 exonerate:protein2genome:local exon 36570 36953 . + . insertions 0 ; deletions 2 KQ414804.1 exonerate:protein2genome:local similarity 36570 36953 117 + . alignment_id 2 ; Query NvOr26 ; Align 36570 101 117 ; Align 36687 142 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr26 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 5 -> 95 Target range: 30785 -> 31049 6 : GlyPheAspHisThrPheGlyMetCysSerIleAsnLeuGlyIleValGlyLeuTrpPro : 25 |||!!. ! .!!.!!||| ! ! !! |||:!!! !:!:||||||:!!|||||| GlyLeuLysValAlaLeuGlyTrpAsnArgTrpAsnMetGluLeuValGlyIleTrpPro 30786 : GGTTTGAAGGTAGCACTTGGATGGAACCGTTGGAACATGGAACTGGTTGGAATTTGGCCA : 30843 26 : AsnSerLysAsnThrLysPheGlnGluPheArgSerAsnValSerPheValPheAlaIle : 45 :!! !:!!:!! !.!.:!! !! !!||| !!!.! !:!!.!. !||| ------GluProSerArgSerAspGlnArgTrpProAsnPheLysAlaLeuLeuPheIle 30844 : ------GAACCGAGCAGATCTGATCAACGATGGCCGAATTTCAAGGCTTTGCTGTTCATT : 30897 46 : PheSerValSerValPheIleSerMetSerGlnThrAlaLysLeuIleMetIleTrpGly : 65 ||| ::: ||| :!! !!|||!:!!.!!!.|||:!!.!.||||||||| PheValIleIlePhePheGlyThrGlyProGlnSerValAsnLeuLeuPheIleTrpGly 30898 : TTTGtgataatattttttggaaCCGGACCTCAGAGCGTGAATCTACTTTTCATATGGGGA : 30957 66 : AspLeuTyrGlnMetIleGluAsnIleSerThrAlaAsnLeuProIleThrValThrVal : 85 |||||| !:!:! ||||||:!:||||||||||||:!!||| !! ! !.!!:!! AspLeuGlyLeuValThrGluAsnLeuSerThrAlaAsnIleProGlyIleAsnAlaMet 30958 : GACCTTGGATTGGTCACGGAAAATCTGTCCACGGCTAATATTCCCGGCATAAACGCCATG : 31017 86 : PheLysMetLeuIlePheArgSerHisLys : 95 .!.|||:!!:!!||| ! !! !|||!:! MetLysLeuIleIleAlaTrpHisHisArg 31018 : ATGAAACTGATTATCGCCTGGCATCACAGA : 31049 vulgar: NvOr26 5 95 . KQ414804.1 30785 31049 + 105 M 20 60 G 2 0 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 30786 31049 105 + . gene_id 3 ; sequence NvOr26 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 30786 31049 . + . KQ414804.1 exonerate:protein2genome:local exon 30786 31049 . + . insertions 0 ; deletions 2 KQ414804.1 exonerate:protein2genome:local similarity 30786 31049 105 + . alignment_id 3 ; Query NvOr26 ; Align 30786 6 60 ; Align 30846 28 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr22 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 273 -> 394 Target range: 51678 -> 52358 274 : ValLeuCysLeuGlnGlyTyrGlnPheValMetIleIleSerGluSerGlyThrLysLeu : 293 :::::: ... ...:::...!!. ! ||| !..!|||! !! ! !!!.::: IleIlePhePheThrAsnPheAspLeu***SerIleAspGluGluIleAspGluAsnMet 51679 : atcatatttttcacgaattttgaTTTGTAGTCAATTGACGAGGAAATAGATGAAAACAtg : 51736 294 : LeuThrSerLeuIlePheIleLeuValPheThrThrGlyAsnValLeuSerLeuPheMet : 313 ::: ...::::::|||:!:||| !!!:!..!..! ! :!!|||..!||||||:!! IlePheGlnIleLeuPheLeuLeuPheTyrValValTyrValMetLeuGlnLeuPheLeu 51737 : attttccaaattctctTTTTGCTGTTCTACGTGGTTTACGTGATGCTACAATTATTCTTG : 51796 314 : TyrCysTyrIleAlaGluIleIleArgAsnGlu >>>> Target Intron 1 >>>> : 325 |||||||||:!:!.!|||! :!! ! !||| 60 bp TyrCysTyrValGlyGluArgLeuSerValGlu++ 51797 : TATTGTTACGTGGGTGAAAGGCTTTCCGTTGAGgt......................... : 51834 326 : SerGlnArgLeuLeuArgAlaValTyrGluMetLysTrpTyrThrLeuProAlaLysA : 344 ||| ..!:!! !!.!|||!.!|||!!: :!!||||||!.!||| !! !!|||: ++SerValGluIleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLysA 51835 : agAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAAA : 51949 345 : spSerCysLeuLeuLeuIleValMetCysArgLeuLysMetProValGluIleThrValG : 364 !!:!! ||||||||||||:!!||| ! ||| !!:!:!:|||:!!:!!||||||!.!| snAlaLysLeuLeuLeuIleIleMetArgArgAlaArgLeuProLeuGlnIleThrAlaG 51950 : ATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCAG : 52009 365 : lyLysPheAlaProPheSerLeuGluTyrPheAlaSer >>>> Target Intron 2 : 377 ||!:!|||||| !!|||!!!||| ! !:!:!!..! 251 bp lyArgPheAlaThrPheThrLeuMetLeuTyrSerGln++ 52010 : GTAGATTTGCTACTTTCACTCTGATGCTGTATTCACAGgt.................... : 52050 378 : >>>> ValValLysThrSerVal<-><->GlyTyrLeuSerValLeuLeuAlaValAr : 392 :!!:!!|||||||||||| ||||||:!!|||||||||! !|||:!!!: ++IleLeuLysThrSerValGlyLysGlyTyrValSerValLeuTyrAlaMetLy 52051 : .....agATTTTAAAAACCTCGGTGGGAAAAGGTTATGTTTCTGTTCTATACGCAATGAA : 52350 393 : gAsnLys : 394 ! !!||| sTyrLys 52351 : ATATAAA : 52358 vulgar: NvOr22 273 394 . KQ414804.1 51678 52358 + 205 M 51 153 5 0 2 I 0 56 3 0 2 M 52 156 5 0 2 I 0 247 3 0 2 M 6 18 G 0 6 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51679 52358 205 + . gene_id 1 ; sequence NvOr22 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51679 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51679 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52047 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52047 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 52048 52049 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 52048 52298 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 52297 52298 . + . intron_id 1 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 52299 52358 . + . KQ414804.1 exonerate:protein2genome:local exon 52299 52358 . + . insertions 6 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51679 52358 205 + . alignment_id 1 ; Query NvOr22 ; Align 51679 274 153 ; Align 51892 325 156 ; Align 52299 377 18 ; Align 52323 383 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr22 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 315 -> 395 Target range: 39938 -> 40256 316 : TyrIleAlaGluIleIleArgAsnGluSerGlnArgLeuLeuArgAlaValTyrGluMet : 335 ||||||...:::||| ... ||| !!:!! !!:!:!!!.!|||!!: TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 336 : LysTrpTyrThrLeuProAlaLysAspSerCysLeuLeuLeuIleValMetCysArgLeu : 355 !!.|||||| !|||||| !!||| !!:!! !! !|||:!!||||||!!:|||||| ! AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 356 : LysMetProValGluIleThrValGlyLysPheAlaProPheSerLeuGluTyrPheAla : 375 :!!:!! !! !!:!!||||||!.!|||||||||::!||||||||||||||| ||| ! GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsn 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAAC : 40116 376 : Ser >>>> Target Intron 1 >>>> ValValLysThrSerValGlyTyrLeuS : 386 :!! 78 bp |||:!!|||||||||!.!|||||||||| Ala++ ++ValLeuLysThrSerAlaGlyTyrLeuS 40117 : GCTgt.........................agGTTTTAAAAACGTCTGCTGGATATCTTT : 40227 387 : erValLeuLeuAlaValArgAsnLysIle : 395 ||||||||||||||:!!!:!:!!!:!:!: erValLeuLeuAlaMetLysAspArgLeu 40228 : CCGTGTTGCTAGCTATGAAAGACAGACTG : 40256 vulgar: NvOr22 315 395 . KQ414804.1 39938 40256 + 180 M 61 183 5 0 2 I 0 74 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40256 180 + . gene_id 2 ; sequence NvOr22 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39939 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40256 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40256 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40256 180 + . alignment_id 2 ; Query NvOr22 ; Align 39939 316 183 ; Align 40200 377 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr29 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 258 Query range: 11 -> 229 Target range: 30797 -> 31512 12 : AlaPheGlyLeuCysArgIleAsnLeuThrValLeuGlyIleTrpProThrLeuArgSer : 31 |||.!!|||! ! !||| |||:!! !:!!:!!|||||||||||| ..! !! AlaLeuGlyTrpAsnArgTrpAsnMetGluLeuValGlyIleTrpPro------GluPro 30798 : GCACTTGGATGGAACCGTTGGAACATGGAACTGGTTGGAATTTGGCCA------GAACCG : 30849 32 : SerLysArgAspGluThrAlaAlaLeuPheArgLeuValLeuSerLeuThrIleIleIle : 51 |||!:! !|||:!! ! ! !! !|||!:! !:!!|||! !:!! !:::|||||| SerArgSerAspGlnArgTrpProAsnPheLysAlaLeuLeuPheIlePheValIleIle 30850 : AGCAGATCTGATCAACGATGGCCGAATTTCAAGGCTTTGCTGTTCATTTTTGtgataata : 30909 52 : LeuPheIleAsnThrValGlnThrIleLysLeuPheIleMetTrpGlyAspLeuAspAla : 71 ...||| ..! ! !|||!:!:!:!!.|||.!!.!!!!:||||||||||||! ! PhePheGlyThrGlyProGlnSerValAsnLeuLeuPheIleTrpGlyAspLeuGlyLeu 30910 : ttttttggaaCCGGACCTCAGAGCGTGAATCTACTTTTCATATGGGGAGACCTTGGATTG : 30969 72 : MetThrAspIleIleSerThrAlaAsnLeuProIleGlyLeuMetValPheLysThrPhe : 91 :!:|||!!:! !:!:||||||||||||:!!||| ! ! ! :!!.!.||| !.!! ValThrGluAsnLeuSerThrAlaAsnIleProGlyIleAsnAlaMetMetLysLeuIle 30970 : GTCACGGAAAATCTGTCCACGGCTAATATTCCCGGCATAAACGCCATGATGAAACTGATT : 31029 92 : ValPheLeuTyrHisLysGlu{A} >>>> Target Intron 1 >>>> {la}Leu : 100 :!! !! !:!!|||!:!!!:{|} 67 bp {||}.!! IleAlaTrpHisHisArgAsp{A}++ ++{la}Phe 31030 : ATCGCCTGGCATCACAGAGAT{G}gt.........................ag{ct}tTC : 31123 101 : ValProLeuLeuSerPheValGlnThrAspTrpSerAsnPheLysThrValSerGluAla : 120 !|||:!!:!!!.!! ! !! ! !||||||!.!!.!! !:!||| ...||| LysProValIleLysSerPheTyrAspAspTrpLysThrSerArgThrLysGluGluLys 31124 : AAGCCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACcaaggaggagaag : 31183 121 : AlaAsnMetTrpSerAsnAlaLeuAlaAlaArgLysIleSerLeuLeuCysValValIle : 140 ..!|||! !!.!!..||| ! !|||!:!:!!||||||:!!! !||| !|||:!! GluThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIleTrpCysSerValLeu 31184 : gagacCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGGTGCTCAGTATTA : 31243 141 : GlyTrpValThrValAsnCysHisLeuAlaIleArgIleGlyGlnGluLeuArgPheMet : 160 !! !..!! !|||!.! !:!!|||::!:!!||| !! ! !!:!.!! ThrLeuThrMetValThrValTyrLeuSerLeuArgAlaTrpIleIleTyrGlnLeuAsp 31244 : ACCTTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATCTACCAGCTTGAT : 31303 161 : SerGlyLysAsnGlyLeuThrArgLeuProPhePheAspSerTyrPheProTyrAspTyr : 180 !!!!.!!!..!. !! ! !||||||! !.!.!:! !.!!|||||||||!:!||| ! ArgAlaAsnGlnLysGlnAspArgLeuLeuLeuTyrProGlyTyrPheProPheAspIle 31304 : AGGGCAAACCAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTATTTTCCCTTCGATATT : 31363 181 : ThrProSerProValTyrGluIleThrPheValIleGlnTyrIleAlaThrMetLeuAla : 200 !|||! ! !||| ! ||| ! !! !||| :!!|||.!! ! !||| ArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeuAlaAlaTyrSerAla 31364 : CGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCAGCGTATTCCGCT : 31423 201 : ThrPheGlyTyrSerGlyLeuTyrSerLeuPheValAlaLeuMetLeuHisLeuCysGly : 220 ..!.!!.!!|||!!! !:!! !!!!!!!!.!!!.! !|||!!::!!|||:!!|||||| ValIleSerTyrThrThrValAspThrPheIleAlaMetLeuIleMetHisIleCysGly 31424 : GTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATAATGCACATATGCGGA : 31483 221 : GlnPheAlaAsnLeuArgAspArgLeu : 229 ||||||! !! ||||||.!.!:!||| GlnPheGluIleLeuArgGlnLysLeu 31484 : CAATTTGAGATACTGAGACAGAAATTA : 31512 vulgar: NvOr29 11 229 . KQ414804.1 30797 31512 + 258 M 16 48 G 2 0 M 69 207 S 0 1 5 0 2 I 0 63 3 0 2 S 1 2 M 130 390 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 30798 31512 258 + . gene_id 1 ; sequence NvOr29 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 30798 31053 . + . KQ414804.1 exonerate:protein2genome:local exon 30798 31053 . + . insertions 0 ; deletions 2 KQ414804.1 exonerate:protein2genome:local splice5 31054 31055 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 31054 31120 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 31119 31120 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 31121 31512 . + . KQ414804.1 exonerate:protein2genome:local exon 31121 31512 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 30798 31512 258 + . alignment_id 1 ; Query NvOr29 ; Align 30798 12 48 ; Align 30846 30 207 ; Align 31123 100 390 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr29 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 192 Query range: 11 -> 256 Target range: 35915 -> 37034 12 : AlaPheGlyLeuCysArgIleAsnLeuThrValLeuGlyIleTrpProThrLeuArgSer : 31 |||.!.|||! ! !|||.!!!:!|||:!!|||||||||:!:|||||| !! !|||!.! AlaMetGlyTrpAsnArgPheSerLeuSerValLeuGlyValTrpProGluProArgLys 35916 : GCTATGGGATGGAATCGTTTCAGTTTATCTGTACTTGGCGTGTGGCCAGAACCGAGAAAG : 35973 32 : <->SerLysArgAspGluThrAlaAlaLeuPheArgLeuValLeuSerLeuThrIleIle : 50 |||!!.! !.....! !|||:!! !|||! !!!! !!!!!!! ! !|||! MetSerAsnLeuSerArgPheAlaSerAsnPheIlePheTrpPheThrThrLeuIleThr 35974 : ATGTCTAACCTGTCACGATTCGCGTCTAACTTTATATTCTGGTTCACGACTTTGATAACG : 36033 51 : IleLeuPheIleAsnThrValGlnThrIleLysLeuPheIleMetTrpGlyAspLeuAsp : 70 :!!:!!|||||| !.!! !|||! !! ! ||| ! ::: :::|||||| ValValPheIleCysAlaProGlnMetThrHisLeuValLeuLysSerThrAsnLeuAsp 36034 : GTTGTCTTCATATGCGCTCCCCAAATGACGCATTTGGTAttaaaatcgacgaatttgGAC : 36093 71 : AlaMetThrAspIleIleSerThrAlaAsnLeuProIleGlyLeuMetVal{P} >>>> : 88 ! !:!!! !!!:! !:!:||| !.!|||:!!|||!!: !!!! :!!{ } GluValIleGluAsnLeuSer---ValAsnIleProMetLeuPheSerLeu{A}+- 36094 : GAGGTGATAGAGAATCTGTCG---GTCAACATACCGATGCTCTTCTCATTG{G}gc.... : 36147 89 : Target Intron 1 >>>> {he}LysThrPheValPheLeuTyrHisLysGluAla : 99 381 bp { !}||| ... :::::: ... !||| +-{sp}LysLeuIlePheThrIleHisThrSerLeuAla 36148 : .....................aa{AC}AAACtgattttcacaattcacACGTCTCTAGCG : 36558 100 : LeuValProLeuLeuSerPheValGlnThrAspTrpSerAsnPheLysThrValSerGlu : 119 |||||| !|||:!!||| :!! !||||||:!!.!. ! !!! ! !!!: LeuValPheLeuMetSerGlnIlePheAspAspTrpAlaGluProIleProGluValAsp 36559 : CTAGTATTCTTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTGGAT : 36618 120 : AlaAlaAsnMetTrpSerAsnAlaLeuAlaAlaArgLysIleSerLeuLeuCysValVal : 139 ! !!..||| !!.!!.!||| ! !::!|||! !||||||:!!:!!||| !:!! ArgHisThrMetLeuLysThrAlaLysIleSerArgMetIleSerIleValCysSerIle 36619 : CGCCACACGATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTCTGTTCTATC : 36678 140 : IleGlyTrpValThrValAsnCysHisLeuAlaIleArgIleGlyGlnGluLeuArgPhe : 159 :!: !!::|||! !||| ..! !|||:!!:!!!:!||| !!......:!!!:! ! LeuThrTyrValMetValLeuAlaPheLeuSerLeuGlnIleTrpSerSerMetGlnAsn 36679 : CTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGCAGCATGCAAAAC : 36738 160 : MetSerGlyLysAsnGlyLeuThrArgLeuProPhePheAspSerTyrPheProTyrAsp : 179 ! |||! ! |||! ! ! !! !||| .!! :!! |||||||||||| ThrSerGluPheAsnValGlyGlyLeuLeu------IleProAlaThrPheProTyrAsp 36739 : ACCTCGGAGTTCAACGTAGGAGGACTACTT------ATCCCGGCCACATTTCCATACGAC : 36792 180 : TyrThrProSerProValTyrGluIleThrPheValIleGlnTyrIleAlaThrMetLeu : 199 !.! !|||||| !||||||||||||!:::!! !|||!:!:!:!.!|||:!!||| ThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrValLeu 36793 : ACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTG : 36852 200 : AlaThrPheGlyTyrSerGlyLeuTyrSerLeuPheValAlaLeuMetLeuHisLeuCys : 219 ::!.!!.!. !!|||||| !!!!! !!!!!!!! !!!.!!.!|||:!!||||||:!!||| SerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHisIleCys 36853 : AGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGC : 36912 220 : GlyGlnPheAlaAsnLeuArg<-><-><->AspArgLeuTyrThrValThrGlnLysLys : 236 ||||||!!..!! !|||||| !!:!.!||| !!.!..!||| !||| ! GlyGlnLeuThrValLeuArgIleAlaLeuGluAsnLeuAlaAsnThrThrIleLysAsp 36913 : GGCCAATTAACTGTTCTCCGCATTGCCCTCGAGAATCTTGCTAACACGACAATAAAAGAC : 36972 237 : AlaGlyValThrPheGlnGlnArgLeuGlyTyrIleValMetArgHisGlnCysLeuTyr : 256 ! ! !! !||||||:!!|||||||||||||||||| |||!!..!. |||!:! AsnTyrSerLysPheGlnGluArgLeuGlyTyrIleValHisArgGlnAsnGlnLeuPhe 36973 : AACTACAGCAAGTTCCAAGAACGATTAGGATACATTGTGCACAGGCAGAATCAATTGTTC : 37032 vulgar: NvOr29 11 256 . KQ414804.1 35915 37034 + 192 M 20 60 G 0 3 M 46 138 G 1 0 M 9 27 S 0 1 5 0 2 I 0 377 3 0 2 S 1 2 M 81 243 G 2 0 M 55 165 G 0 9 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 35916 37034 192 + . gene_id 2 ; sequence NvOr29 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 35916 36144 . + . KQ414804.1 exonerate:protein2genome:local exon 35916 36144 . + . insertions 3 ; deletions 1 KQ414804.1 exonerate:protein2genome:local splice5 36145 36146 . + . intron_id 1 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 36145 36525 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 36524 36525 . + . intron_id 0 ; splice_site "AA" KQ414804.1 exonerate:protein2genome:local cds 36526 37034 . + . KQ414804.1 exonerate:protein2genome:local exon 36526 37034 . + . insertions 9 ; deletions 2 KQ414804.1 exonerate:protein2genome:local similarity 35916 37034 192 + . alignment_id 2 ; Query NvOr29 ; Align 35916 12 60 ; Align 35979 32 138 ; Align 36117 79 27 ; Align 36528 89 243 ; Align 36771 172 165 ; Align 36945 227 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr29 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 188 Query range: 143 -> 261 Target range: 44799 -> 45147 144 : ThrValAsnCysHisLeuAlaIleArgIleGlyGlnGluLeuArgPheMetSerGlyLys : 163 |||||| ||||||:!!!.!:!!! !! ! ! ! |||||||||:!:!!! !!||| ThrValLeuCysHisIleValValIleThrTyrIlePheLeuArgPheLeuThrArgLys 44800 : ACAGTGTTATGTCACATTGTGGTCATCACTTATATATTTCTACGATTCCTCACCAGGAAG : 44857 164 : AsnGlyLeuThrArgLeuProPhePheAspSerTyrPheProTyrAspTyrThrProSer : 183 !!.!! !||||||||| .!!||| !:!!||||||||||||||| ! ! !||| TyrSerGlyThrArgLeu---LeuPheArgAlaTyrPheProTyrAspSerAspValSer 44858 : TACAGCGGCACCAGACTA---CTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGT : 44914 184 : ProValTyrGluIleThrPheValIleGlnTyrIleAlaThrMetLeuAlaThrPheGly : 203 ||| !||||||.!!||| ! :!! !||| !||||||.!!.!.! !|||.!! ! ! ProAsnTyrGluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThr 44915 : CCAAATTACGAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACA : 44974 204 : TyrSerGlyLeuTyrSerLeuPheValAlaLeuMetLeuHisLeuCysGlyGlnPheAla : 223 |||!!!!.!:!! !!!!!!!!.!!||| !|||!!:||||||:!!|||||||||.!!:!! TyrThrAlaValAspThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeuSer 44975 : TACACAGCCGTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCG : 45034 224 : AsnLeuArgAspArgLeuTyrThrValThrGlnLysLysAlaGlyValThrPheGlnGln : 243 |||||||||:!!..! !:! ! ! !||| ! ! ! !||||||!!.||| ! AsnLeuArgAsnGlu---PheGlyLysLeuGlnAlaCysAspLysValThrLeuGlnAla 45035 : AATTTGAGAAACGAA---TTCGGTAAGCTTCAAGCATGCGATAAAGTAACATTACAGGCG : 45091 244 : ArgLeuGlyTyrIleValMetArgHisGlnCysLeuTyrAsnPheAlaGlnVal : 261 !:!|||||| ! ||||||..!!:!|||:!!! !||| !!!..|||!.!..!:!! LysLeuGlyLysIleValGlnLysHisGluTyrLeuAsnArgPheValSerLeu 45092 : AAGTTGGGGAAAATCGTGCAGAAACACGAATATCTTAACAGGTTCGTATCATTG : 45147 vulgar: NvOr29 143 261 . KQ414804.1 44799 45147 + 188 M 26 78 G 1 0 M 58 174 G 1 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44800 45147 188 + . gene_id 3 ; sequence NvOr29 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44800 45147 . + . KQ414804.1 exonerate:protein2genome:local exon 44800 45147 . + . insertions 0 ; deletions 2 KQ414804.1 exonerate:protein2genome:local similarity 44800 45147 188 + . alignment_id 3 ; Query NvOr29 ; Align 44800 144 78 ; Align 44878 171 174 ; Align 45052 230 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr29 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 322 -> 402 Target range: 39938 -> 40256 323 : TyrValAlaGluLysLeuGlnAspGluSerValSerIleAlaLysAlaAlaTyrGluCys : 342 |||:::...::: ... |||..!.!!|||!.!:!!:!!||||||!!:||| TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 343 : GlnTrpTyrHisLeuSerProLysAspValMetLeuLeuIleMetIleIleAsnArgAla : 362 .!.|||||| !!||| !!|||||| !!!.!:!:! !|||:!!!!::!:||| !|||||| AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 363 : LysAspProIleGluMetThrAlaGlyLysPheCysThrPheSerLeuSerLeuTyrAla : 382 :!!! !!.!!:!!!!:||||||||||||||| !! !!|||||||||..!|||!:! ! GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsn 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAAC : 40116 383 : Gln >>>> Target Intron 1 >>>> IlePheLysAsnSerGlyGlyTyrLeuS : 393 78 bp :!!!!.|||!..|||!.!|||||||||| Ala++ ++ValLeuLysThrSerAlaGlyTyrLeuS 40117 : GCTgt.........................agGTTTTAAAAACGTCTGCTGGATATCTTT : 40227 394 : erMetLeuLeuAlaMetArgAspLysIle : 402 ||:!!||||||||||||!:!|||!:!:!: erValLeuLeuAlaMetLysAspArgLeu 40228 : CCGTGTTGCTAGCTATGAAAGACAGACTG : 40256 vulgar: NvOr29 322 402 . KQ414804.1 39938 40256 + 172 M 61 183 5 0 2 I 0 74 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40256 172 + . gene_id 4 ; sequence NvOr29 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39939 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40256 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40256 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40256 172 + . alignment_id 4 ; Query NvOr29 ; Align 39939 323 183 ; Align 40200 384 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr29 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 330 -> 398 Target range: 34381 -> 34668 331 : GluSerValSerIleAlaLysAlaAlaTyrGluCysGlnTrpTyrHisLeuSerProLys : 350 :!!||| !..!!!:::!!!.:!!|||||||||! .!.||||||:!!:!!|||||| ! GlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProPro 34382 : CAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCA : 34439 351 : AspValMetLeuLeuIleMetIleIleAsnArgAlaLysAspProIleGluMetThrAla : 370 !!:!.!! !! !|||:!!.!.|||!!::!!|||.!! !|||:!! :!!|||||| GluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAla 34440 : GAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCA : 34499 371 : GlyLysPheCysThrPheSerLeuSerLeuTyrAlaGln >>>> Target Intron : 384 ||||||||| !!|||||||||:!!..!:!!!:!::! 83 bp GlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34500 : GGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt................... : 34543 385 : 1 >>>> IlePheLysAsnSerGlyGlyTyrLeuSerMetLeuLeuAlaMet : 398 |||.!.|||!..:!! !||||||||||||:!:||||||.!!:!: ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeuThrVal 34544 : ......agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTCACAGTT : 34668 vulgar: NvOr29 330 398 . KQ414804.1 34381 34668 + 142 M 53 159 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34382 34668 142 + . gene_id 5 ; sequence NvOr29 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34382 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34382 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34668 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34668 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34382 34668 142 + . alignment_id 5 ; Query NvOr29 ; Align 34382 331 159 ; Align 34624 384 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr21 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 163 Query range: 299 -> 389 Target range: 51720 -> 52050 300 : GluAsnSerGluGlnAsnPheIleThrIleAlaPheIleLeuValTyrThrThrAlaAsn : 319 |||! ..!|||.!.! ...... ||| |||:!:||| !!|||..!..! ! GluIleAspGluAsnMetIlePheGlnIleLeuPheLeuLeuPheTyrValValTyrVal 51721 : GAAATAGATGAAAACAtgattttccaaattctctTTTTGCTGTTCTACGTGGTTTACGTG : 51778 320 : IleLeuSerLeuPheValTyrCysTyrValAlaGluLysLeuArgLysGlu >>>> Ta : 337 !!:|||..!||||||:!!||||||||||||!.!|||!:!||| ! ||| MetLeuGlnLeuPheLeuTyrCysTyrValGlyGluArgLeuSerValGlu++ 51779 : ATGCTACAATTATTCTTGTATTGTTACGTGGGTGAAAGGCTTTCCGTTGAGgt....... : 51834 338 : rget Intron 1 >>>> SerThrGluIlePheTyrAlaValCysAlaMetProTrpH : 350 60 bp |||..!|||||| ! !!|||!.!! !! ! !|||: ++SerValGluIleAlaAsnAlaAlaTyrAspSerGluTrpT 51835 : ..................agAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAATGGT : 51931 351 : isGluValLysProGluGluSerLysMetIleValAsnIleMetTyrAlaAlaLysHisP : 370 !!.!.:!!...|||:!!.!.:!!|||:!!:!!:!!! !|||||| !|||!:! | yrAsnLeuSerProLysAsnAlaLysLeuLeuLeuIleIleMetArgArgAlaArgLeuP 51932 : ACAATTTGTCTCCGAAAAATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGTTAC : 51991 371 : roPheGluIleThrAlaGlyLysPheAlaValLeuSerPheSerTyrPheValLysVal : 389 ||.!.:!!||||||||||||!:!||||||..!!!!!!!.!.! ! !:! !:!!||| roLeuGlnIleThrAlaGlyArgPheAlaThrPheThrLeuMetLeuTyrSerGlnVal 51992 : CTCTACAAATCACTGCAGGTAGATTTGCTACTTTCACTCTGATGCTGTATTCACAGGTa : 52050 vulgar: NvOr21 299 389 . KQ414804.1 51720 52050 + 163 M 37 111 5 0 2 I 0 56 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51721 52050 163 + . gene_id 1 ; sequence NvOr21 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51721 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51721 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52050 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52050 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51721 52050 163 + . alignment_id 1 ; Query NvOr21 ; Align 51721 300 111 ; Align 51892 337 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr21 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 335 -> 406 Target range: 34381 -> 34677 336 : GluSerThrGluIlePheTyrAlaValCysAlaMetProTrpHisGluValLysProGlu : 355 :!!|||! !|||!!: ! !!:!!!.!! !! ! !|||:!!.!.|||..!||| ! GlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProPro 34382 : CAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCA : 34439 356 : GluSerLysMetIleValAsnIleMetTyrAlaAlaLysHisProPheGluIleThrAla : 375 |||:!!||| :!!:!! !||||||:!! !.!! !.!|||.!! :!:|||||| GluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAla 34440 : GAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCA : 34499 376 : GlyLysPheAlaValLeuSerPheSerTyrPheValLys >>>> Target Intron : 389 |||||||||::!..!!!!|||.!...! ||| !! 83 bp GlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34500 : GGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt................... : 34543 390 : 1 >>>> ValLeuLysThrAlaMetGlyTyrLeuSerMetLeuLeuAlaMetLysSerS : 406 :::|||||||||||||||||||||||||||:!:||||||.!!:!:! !.!!| ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeuThrValThrGlyS 34544 : ......agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTCACAGTTACAGGTA : 34675 407 : er : 406 || er 34676 : GC : 34677 vulgar: NvOr21 335 406 . KQ414804.1 34381 34677 + 127 M 53 159 5 0 2 I 0 79 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34382 34677 127 + . gene_id 2 ; sequence NvOr21 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34382 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34382 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34677 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34677 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34382 34677 127 + . alignment_id 2 ; Query NvOr21 ; Align 34382 336 159 ; Align 34624 389 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr21 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 173 -> 236 Target range: 44874 -> 45063 174 : MetPheValArgSerLysPheProPheGluThrGlnGlySerProThrPheGluIleIle : 193 :!:.!! !!|||:!! ! ||||||!:!!!:!:!.!.! !||||||!.!!:!|||.!!! ! LeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThr 44875 : CTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACA : 44932 194 : TrpPheLeuGlnPheLeuAlaAlaValMetSerIleAlaAlaPheThrThrPheAspGly : 213 !.!! !|||.!!:!!|||||| !! :!! !.!!.!!!:!|||.!! !!||| ! ValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThr 44933 : GTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACT : 44992 214 : PhePheIlePheSerIleLeuHisValCysAlaGlnLeuValAsnLeuGlnCysAsnPhe : 233 |||.!!:!!.!.! !|||||||||||||||!.!|||||| !||||||::! !.!.||| PheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArgAsnGluPhe 44993 : TTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGAAACGAATTC : 45052 234 : ArgAsnLeu : 236 !!!!.||| GlyLysLeu 45053 : GGTAAGCTT : 45063 vulgar: NvOr21 173 236 . KQ414804.1 44874 45063 + 118 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44875 45063 118 + . gene_id 3 ; sequence NvOr21 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44875 45063 . + . KQ414804.1 exonerate:protein2genome:local exon 44875 45063 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44875 45063 118 + . alignment_id 3 ; Query NvOr21 ; Align 44875 174 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr25 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 283 Query range: 256 -> 384 Target range: 51506 -> 52050 257 : ArgPheAlaGluAspIleGluAsnIlePheThrLeuMetPheLeuAlaGluIleLeuSer : 276 |||||||||||| ||||||..! !|||!.!:!!|||.!!||| !:!!!!:|||.!! ArgPheAlaGluThrIleGluArgCysPheAsnMetMetLeuLeuIleGlnMetLeuGly 51507 : AGGTTCGCAGAAACGATAGAGCGTTGTTTCAATATGATGCTTCTGATTCAGATGCTCGGT : 51564 277 : CysThrIleGlnIleCysLeuGlnValPheLeuLeuValThr >>>> Target Intr : 291 ||||||:!!|||:!!|||!!!||| !|||! ! !|||! ! 100 bp CysThrValGlnLeuCysPheGlnCysPheGlnAlaValMet++ 51565 : TGTACCGTTCAGCTATGCTTCCAGTGTTTCCAAGCAGTCATGgt................ : 51611 292 : on 1 >>>> LeuMetSerAsnAspAsnGlyGlyValProIleLeuGlnIleLeuPheM : 307 ! !!!:..!.!.!!:! ! !! ! ! |||...||||||||||||: ++SerIleAspGluGluIleAspGluAsnMetIlePheGlnIleLeuPheL 51612 : .........agTCAATTGACGAGGAAATAGATGAAAACAtgattttccaaattctctTTT : 51757 308 : etMetValTyrAlaMetHisValGlyThrHisValPheIleCysCysTyrValAlaAspL : 327 !!:!! !!|||!.!:!::!!||| ! !!!.:!!|||:!:! !|||||||||!.!!!:! euLeuPheTyrValValTyrValMetLeuGlnLeuPheLeuTyrCysTyrValGlyGluA 51758 : TGCTGTTCTACGTGGTTTACGTGATGCTACAATTATTCTTGTATTGTTACGTGGGTGAAA : 51817 328 : ysLeuArgAspGlu >>>> Target Intron 2 >>>> SerLeuSerIleCysAs : 337 :!||| !! !||| 60 bp |||:!!..!|||..!:! rgLeuSerValGlu++ ++SerValGluIleAlaAs 51818 : GGCTTTCCGTTGAGgt.........................agAGCGTTGAAATAGCTAA : 51907 338 : pLeuAlaTyrAsnTyrGluTrpTyrArgLeuProAlaArgAspAlaArgLeuLeuLeuPh : 357 ! !||||||:!!! !|||||||||!.!||| !! !!!:!:!!|||!:!|||||||||.! nAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLysAsnAlaLysLeuLeuLeuIl 51908 : CGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTGCTACTAAT : 51967 358 : eIleMetLeuArgAlaGluArgProLeuGluValThrAlaGlyLysPheCysAlaPheSe : 377 !||||||! !||||||..! !||||||:!!:!!|||||||||!:!|||..!.!!|||!! eIleMetArgArgAlaArgLeuProLeuGlnIleThrAlaGlyArgPheAlaThrPheTh 51968 : TATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCAGGTAGATTTGCTACTTTCAC : 52027 378 : rLeuArgLeuTyrAlaGlnIle : 384 !|||! !||||||:!!|||:!: rLeuMetLeuTyrSerGlnVal 52028 : TCTGATGCTGTATTCACAGGTa : 52050 vulgar: NvOr25 256 384 . KQ414804.1 51506 52050 + 283 M 34 102 5 0 2 I 0 96 3 0 2 M 41 123 5 0 2 I 0 56 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51507 52050 283 + . gene_id 1 ; sequence NvOr25 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51507 51608 . + . KQ414804.1 exonerate:protein2genome:local exon 51507 51608 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51609 51610 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51609 51708 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51707 51708 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 51709 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51709 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 1 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52050 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52050 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51507 52050 283 + . alignment_id 1 ; Query NvOr25 ; Align 51507 257 102 ; Align 51709 291 123 ; Align 51892 332 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr25 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 206 Query range: 42 -> 256 Target range: 30887 -> 31605 43 : IleIleSerLeuPheThrIleIleValPheValAsnLeuAlaGlnThrValLysLeuIle : 62 :!::!:! !:!!|||...|||||| ||| ..! ! !!|||!:!|||!!.|||:!! LeuLeuPheIlePheValIleIlePhePheGlyThrGlyProGlnSerValAsnLeuLeu 30888 : TTGCTGTTCATTTTTGtgataatattttttggaaCCGGACCTCAGAGCGTGAATCTACTT : 30945 63 : MetIleTrpGlyAspLeuAsnHisMetIleAspAsnIleSerThrAlaAsnLeuProIle : 82 .!.|||||||||||||||... :!:! !!:|||:!:||||||||||||:!!||| ! PheIleTrpGlyAspLeuGlyLeuValThrGluAsnLeuSerThrAlaAsnIleProGly 30946 : TTCATATGGGGAGACCTTGGATTGGTCACGGAAAATCTGTCCACGGCTAATATTCCCGGC : 31005 83 : AlaValValValPheLysMetLeuThrPheArgArgTyrLysLys{T} >>>> Targe : 98 ! !!.!:!!.!.|||:!!:!!! ! ! !!!.!:!!!:! ! {.} IleAsnAlaMetMetLysLeuIleIleAlaTrpHisHisArgAsp{A}++ 31006 : ATAAACGCCATGATGAAACTGATTATCGCCTGGCATCACAGAGAT{G}gt.......... : 31056 99 : t Intron 1 >>>> {hr}LeuThrArgLeuLeuGlyIleAlaMetAspAspTrpCys : 111 67 bp {!!}.!!! !! !:!!:!! ! ! ! ||||||||| ++{la}PheLysProValIleLysSerPheTyrAspAspTrpLys 31057 : ...............ag{ct}tTCAAGCCCGTTATAAAATCCTTCTACGACGATTGGAAA : 31159 112 : ThrLysLysThrSerArgGluAlaGluAsnMetSerLysAsnAlaArgThrAlaArgLys : 131 |||..!!:!|||......||| |||..!|||! !|||!..|||!:! !|||!:!:!! ThrSerArgThrLysGluGluLysGluThrMetLeuLysArgAlaLysPheAlaLysGln 31160 : ACCTCAAGGACcaaggaggagaaggagacCATGTTGAAGAGAGCCAAATTTGCGAAACAA : 31219 132 : MetSerLeuValCysValValLeuGlyPheGlySerValAsnGlyGlnLeuAlaValArg : 151 !!:|||:!! !||| !|||||| !!!. !! !|||!.!! ! ! |||::!:!!||| IleSerIleTrpCysSerValLeuThrLeuThrMetValThrValTyrLeuSerLeuArg 31220 : ATTTCCATCTGGTGCTCAGTATTAACCTTGACCATGGTCACTGTTTATCTAAGTCTTCGA : 31279 152 : IleSerGlnGluLeuAspIle<->LeuProGlyGlnThrGluLysArgLeuProMetLeu : 170 !!! ! !.!.:!! ! !!..!|||! !:!! ! ||||||! !:!!! ! AlaTrpIleIleTyrGlnLeuAspArgAlaAsnGlnLysGlnAspArgLeuLeuLeuTyr 31280 : GCGTGGATCATCTACCAGCTTGATAGGGCAAACCAGAAACAGGATCGTCTGCTCCTGTAC : 31339 171 : SerSerTyrIleProTyrGluTyrGlnThrSerProAlaTyrGluIleThrTrpPheMet : 190 !!.!!|||.!!|||!:!!!: !!:: !!! ! !!.! ! ||| ||| ProGlyTyrPheProPheAspIleArgProIleGlyValLeuLeuSerThrAsnPheGly 31340 : CCTGGCTATTTTCCCTTCGATATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGC : 31399 191 : GlnTyrLeuGlyAlaValLeuAlaThrLeuValTyrSerGlyValTyrCysValPheVal : 210 ||| |||!.!||| !! !|||..!:!! !|||!!! !||| !! !!.!!!.! GlnValLeuAlaAlaTyrSerAlaValIleSerTyrThrThrValAspThrPheIleAla 31400 : CAAGTGCTCGCAGCGTATTCCGCTGTTATCAGTTACACCACCGTGGATACATTTATCGCG : 31459 211 : GlyLeuValLeuHisLeuArgGlyGlnValAlaAsnLeuArgPheMetPheGluSerVal : 230 !|||:!!:!!|||:!! !!|||||| !!! !! |||||| ! !!...!!!!:!! MetLeuIleMetHisIleCysGlyGlnPheGluIleLeuArgGlnLysLeuArgArgLeu 31460 : ATGCTGATAATGCACATATGCGGACAATTTGAGATACTGAGACAGAAATTACGAAGGCTG : 31519 231 : AspAspProGluGluAspLysGlyLys<-><->AsnPheArgArgArgLeuArgSerLeu : 248 ||| !|||:!! ! ! !!!.. .!..!!!:!!:!..!||| !! !:!! MetAspAspGluLysLysThrArgSerValAspGluIleGlnLysGluLeuValLeuIle 31520 : ATGGATGACGAGAAGAAGACCAGAAGCGTGGATGAGATTCAGAAGGAGCTGGTTTTGATC : 31579 249 : ValGluArgHisGluSerLeuAsn : 256 :!!|||||||||||| !|||||| IleGluArgHisGluHisLeuAsn 31580 : ATAGAGAGGCATGAGCATCTAAAT : 31605 vulgar: NvOr25 42 256 . KQ414804.1 30887 31605 + 206 M 55 165 S 0 1 5 0 2 I 0 63 3 0 2 S 1 2 M 60 180 G 0 3 M 81 243 G 0 6 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 30888 31605 206 + . gene_id 2 ; sequence NvOr25 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 30888 31053 . + . KQ414804.1 exonerate:protein2genome:local exon 30888 31053 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 31054 31055 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 31054 31120 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 31119 31120 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 31121 31605 . + . KQ414804.1 exonerate:protein2genome:local exon 31121 31605 . + . insertions 9 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 30888 31605 206 + . alignment_id 2 ; Query NvOr25 ; Align 30888 43 165 ; Align 31123 99 180 ; Align 31306 159 243 ; Align 31555 240 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr25 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 330 -> 398 Target range: 34381 -> 34668 331 : GluSerLeuSerIleCysAspLeuAlaTyrAsnTyrGluTrpTyrArgLeuProAlaArg : 350 :!!||| !..!!!: !!:!!! !||||||.!.! .!.||||||!.!:!! !! !!! ! GlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProPro 34382 : CAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCA : 34439 351 : AspAlaArgLeuLeuLeuPheIleMetLeuArgAlaGluArgProLeuGluValThrAla : 370 !!:|||!:!! !|||||||||||||||! !|||.!!! ||||||||| :!!|||||| GluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAla 34440 : GAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCA : 34499 371 : GlyLysPheCysAlaPheSerLeuArgLeuTyrAlaGln >>>> Target Intron : 384 ||||||||| !!.!!||||||:!!..!:!!!:!::! 83 bp GlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34500 : GGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt................... : 34543 385 : 1 >>>> IleLeuLysThrSerGlyGlyTyrLeuSerMetLeuLeuAlaVal : 398 ||||||||||||:!! !||||||||||||:!:||||||.!!||| ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeuThrVal 34544 : ......agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTCACAGTT : 34668 vulgar: NvOr25 330 398 . KQ414804.1 34381 34668 + 148 M 53 159 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34382 34668 148 + . gene_id 3 ; sequence NvOr25 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34382 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34382 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34668 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34668 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34382 34668 148 + . alignment_id 3 ; Query NvOr25 ; Align 34382 331 159 ; Align 34624 384 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr25 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 331 -> 401 Target range: 39965 -> 40253 332 : SerLeuSerIleCysAspLeuAlaTyrAsnTyrGluTrpTyrArgLeuProAlaArgAsp : 351 ||| !.!!||| !!.!.! !||||||:!!! !.!.|||||| !|||||| !!!:! !! SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 352 : AlaArgLeuLeuLeuPheIleMetLeuArgAlaGluArgProLeuGluValThrAlaGly : 371 ||| !! !|||:!!.!!:!:!!:! !||||||:!! ! !!!!!:!!:!!||||||||| AlaValSerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGly 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGA : 40083 372 : LysPheCysAlaPheSerLeuArgLeuTyrAlaGlnIleLeu{L} >>>> Target I : 386 |||||| !! !!|||||||||..!|||!:! ! :!: !{:} 78 LysPheSerProPheSerLeuGluLeuPheAsnAlaValSer{G}+- 40084 : AAATTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTGTGAGT{C}ga............. : 40131 387 : ntron 1 >>>> {ys}ThrSerGlyGlyTyrLeuSerMetLeuLeuAlaValLysAsp : 400 bp {!!}||||||!.!||||||||||||:!!|||||||||:!!|||||| +-{ln}ThrSerAlaGlyTyrLeuSerValLeuLeuAlaMetLysAsp 40132 : ............aa{AA}ACGTCTGCTGGATATCTTTCCGTGTTGCTAGCTATGAAAGAC : 40248 401 : Arg : 401 ||| Arg 40249 : AGA : 40253 vulgar: NvOr25 331 401 . KQ414804.1 39965 40253 + 114 M 54 162 S 0 1 5 0 2 I 0 74 3 0 2 S 1 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40253 114 + . gene_id 4 ; sequence NvOr25 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39966 40128 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40128 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40129 40130 . + . intron_id 1 ; splice_site "GA" KQ414804.1 exonerate:protein2genome:local intron 40129 40206 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40205 40206 . + . intron_id 0 ; splice_site "AA" KQ414804.1 exonerate:protein2genome:local cds 40207 40253 . + . KQ414804.1 exonerate:protein2genome:local exon 40207 40253 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39966 40253 114 + . alignment_id 4 ; Query NvOr25 ; Align 39966 332 162 ; Align 40209 387 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr25 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 42 -> 92 Target range: 44203 -> 44353 43 : IleIleSerLeuPheThrIleIleValPheValAsnLeuAlaGlnThrValLysLeuIle : 62 :!!||| !!:!!.!!! !!!:.!!:!!|||||| !:!! !!||||||:!!!!.||| ! LeuIleProValLeuMetMetPheLeuPheValCysValProGlnThrIleAsnLeuSer 44204 : CTAATACCAGTTCTCATGATGTTTCTCTTCGTTTGTGTCCCACAAACGATCAATCTTTCA : 44261 63 : MetIleTrpGlyAspLeuAsnHisMetIleAspAsnIleSerThrAlaAsnLeuProIle : 82 .!.||||||||||||!!!||| :!!:!!!!:|||:!!|||! !!.!|||:!! !!||| PheIleTrpGlyAspPheAsnLeuValValGluAsnLeuSerMetGlyAsnIleThrIle 44262 : TTCATCTGGGGTGATTTTAATTTAGTGGTAGAGAATCTATCCATGGGTAACATAACAATC : 44321 83 : AlaValValValPheLysMetLeuThrPhe : 92 .!!:!! !:!!.!.|||! :!!.!!||| ThrIleSerLeuLeuLysThrIleAlaPhe 44322 : ACTATTTCCCTTCTGAAGACCATCGCTTTT : 44353 vulgar: NvOr25 42 92 . KQ414804.1 44203 44353 + 101 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44204 44353 101 + . gene_id 5 ; sequence NvOr25 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44204 44353 . + . KQ414804.1 exonerate:protein2genome:local exon 44204 44353 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44204 44353 101 + . alignment_id 5 ; Query NvOr25 ; Align 44204 43 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr27 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 182 Query range: 302 -> 401 Target range: 51693 -> 52050 303 : GlyPheGluPheAlaMetValIleThrLysSerGlySerGluMetValProTyrLeuMet : 322 ...|||:::!!. ! :!! ! !:!!! !! !..!.!.|||::: :::::: AsnPheAspLeu***SerIleAspGluGluIleAspGluAsnMetIlePheGlnIleLeu 51694 : aattttgaTTTGTAGTCAATTGACGAGGAAATAGATGAAAACAtgattttccaaattctc : 51751 323 : PheIleLeuCysPheValAlaSerAsnLeuValSerIlePheThrTyrCysTyrValAla : 342 |||:!:|||! !!:!|||!.!! ! :!!:!!..!:!!||| !||||||||||||!.! PheLeuLeuPheTyrValValTyrValMetLeuGlnLeuPheLeuTyrCysTyrValGly 51752 : tTTTTGCTGTTCTACGTGGTTTACGTGATGCTACAATTATTCTTGTATTGTTACGTGGGT : 51811 343 : GluArgLeuArgGluGln >>>> Target Intron 1 >>>> SerGluAsnLeuP : 353 ||||||||| !! :!! 60 bp |||! .!.:!! GluArgLeuSerValGlu++ ++SerValGluIleA 51812 : GAAAGGCTTTCCGTTGAGgt.........................agAGCGTTGAAATAG : 51904 354 : heArgAlaIlePheGluIleArgTrpTyrAspLeuAlaProAsnAspSerLysLeuLeuI : 373 !!.!||| !!:!!!: !..!||||||:!!|||:!!|||!!.:!!:!!|||||||||: laAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLysAsnAlaLysLeuLeuL 51905 : CTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTGCTAC : 51964 374 : leIleIleMetThrGlnThrLysThrProIleGluIleThrValGlyLysPheValAlaP : 393 !!||||||||| !!:!.!!!:! !|||:!!:!!||||||!.!|||!:!|||!.!.!!| euIleIleMetArgArgAlaArgLeuProLeuGlnIleThrAlaGlyArgPheAlaThrP 51965 : TAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCAGGTAGATTTGCTACTT : 52024 394 : heSerLeuGlyTyrPheCysSerVal : 401 ||!!!||| ! !:!! ..!||| heThrLeuMetLeuTyrSerGlnVal 52025 : TCACTCTGATGCTGTATTCACAGGTa : 52050 vulgar: NvOr27 302 401 . KQ414804.1 51693 52050 + 182 M 46 138 5 0 2 I 0 56 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51694 52050 182 + . gene_id 1 ; sequence NvOr27 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51694 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51694 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52050 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52050 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51694 52050 182 + . alignment_id 1 ; Query NvOr27 ; Align 51694 303 138 ; Align 51892 349 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr27 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 339 -> 419 Target range: 39938 -> 40256 340 : TyrValAlaGluArgLeuArgGluGlnSerGluAsnLeuPheArgAlaIlePheGluIle : 359 |||:::...::: ... ||| ...:!! !!:!:!! !!:!!!: ! TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 360 : ArgTrpTyrAspLeuAlaProAsnAspSerLysLeuLeuIleIleIleMetThrGlnThr : 379 !.!|||||||||||| !!|||!!. !!:!! ! !|||:!!|||:!:!!: !!::.!! AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 380 : LysThrProIleGluIleThrValGlyLysPheValAlaPheSerLeuGlyTyrPheCys : 399 :!!..! !!.!!:!!||||||!.!||||||||| ! !!|||||||||! ! ||| ! GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsn 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAAC : 40116 400 : Ser >>>> Target Intron 1 >>>> ValLeuLysThrSerAlaGlyTyrLeuS : 410 :!! 78 bp |||||||||||||||||||||||||||| Ala++ ++ValLeuLysThrSerAlaGlyTyrLeuS 40117 : GCTgt.........................agGTTTTAAAAACGTCTGCTGGATATCTTT : 40227 411 : erMetLeuLeuAlaValGlnAspArgLeu : 419 ||:!!|||||||||:!!:!!||||||||| erValLeuLeuAlaMetLysAspArgLeu 40228 : CCGTGTTGCTAGCTATGAAAGACAGACTG : 40256 vulgar: NvOr27 339 419 . KQ414804.1 39938 40256 + 153 M 61 183 5 0 2 I 0 74 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40256 153 + . gene_id 2 ; sequence NvOr27 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39939 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40256 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40256 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40256 153 + . alignment_id 2 ; Query NvOr27 ; Align 39939 340 183 ; Align 40200 401 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr18NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 217 Query range: 299 -> 383 Target range: 51738 -> 52050 300 : PhePheGluLeuIlePheMetAlaTyrPheThrCysCysPheThrPheSerLeuPheVal : 319 ...|||:::::::::|||:!! !!:!!:!..! !! ! ! ! !.!...!||||||:!! IlePheGlnIleLeuPheLeuLeuPheTyrValValTyrValMetLeuGlnLeuPheLeu 51739 : attttccaaattctctTTTTGCTGTTCTACGTGGTTTACGTGATGCTACAATTATTCTTG : 51796 320 : TyrCysTyrValAlaGluValLeuArgThrGlu >>>> Target Intron 1 >>>> : 331 ||||||||||||!.!||| !||| !..!||| 60 bp TyrCysTyrValGlyGluArgLeuSerValGlu++ 51797 : TATTGTTACGTGGGTGAAAGGCTTTCCGTTGAGgt......................... : 51834 332 : SerMetGluIleGlyAsnAlaAlaTyrGlnCysAsnTrpTyrThrLeuProProSerG : 350 |||:!:||||||!.!||||||||||||.!.! !.!.||||||!.!||| !!|||!.!. ++SerValGluIleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLysA 51835 : agAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAAA : 51949 351 : luAlaLysCysLeuThrLeuIleMetIleArgAlaLysGlnProPheGluIleThrAlaG : 370 !.||||||! ||| !:!!|||||| !||||||!:! !|||.!.:!!|||||||||| snAlaLysLeuLeuLeuIleIleMetArgArgAlaArgLeuProLeuGlnIleThrAlaG 51950 : ATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCAG : 52009 371 : lyLysPheAlaAlaPheSerLeuGluLeuTyrCysArgIle : 383 ||!:!||||||.!!|||!!!||| !||||||! !:!:!: lyArgPheAlaThrPheThrLeuMetLeuTyrSerGlnVal 52010 : GTAGATTTGCTACTTTCACTCTGATGCTGTATTCACAGGTa : 52050 vulgar: NvOr18NTE 299 383 . KQ414804.1 51738 52050 + 217 M 31 93 5 0 2 I 0 56 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51739 52050 217 + . gene_id 1 ; sequence NvOr18NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51739 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51739 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52050 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52050 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51739 52050 217 + . alignment_id 1 ; Query NvOr18NTE ; Align 51739 300 93 ; Align 51892 331 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr18NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 213 Query range: 321 -> 401 Target range: 39938 -> 40256 322 : TyrValAlaGluValLeuArgThrGluSerMetGluIleGlyAsnAlaAlaTyrGlnCys : 341 |||:::...:::::: ... |||! ! !||||||.!.:!!||||||.!.||| TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 342 : AsnTrpTyrThrLeuProProSerGluAlaLysCysLeuThrLeuIleMetIleArgAla : 361 ||||||||| !|||||||||!.!.!.||| ! |||..!:!!:!:!!: !|||||| AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 362 : LysGlnProPheGluIleThrAlaGlyLysPheAlaAlaPheSerLeuGluLeuTyrCys : 381 :!! ! !!|||:!!||||||||||||||||||::! !!|||||||||||||||!:! ! GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsn 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAAC : 40116 382 : Arg >>>> Target Intron 1 >>>> IleLeuLysSerSerGlyGlyTyrLeuS : 392 ! 78 bp :!!||||||!!!|||!.!|||||||||| Ala++ ++ValLeuLysThrSerAlaGlyTyrLeuS 40117 : GCTgt.........................agGTTTTAAAAACGTCTGCTGGATATCTTT : 40227 393 : erMetLeuLeuAlaValLysAspArgLeu : 401 ||:!!|||||||||:!!|||||||||||| erValLeuLeuAlaMetLysAspArgLeu 40228 : CCGTGTTGCTAGCTATGAAAGACAGACTG : 40256 vulgar: NvOr18NTE 321 401 . KQ414804.1 39938 40256 + 213 M 61 183 5 0 2 I 0 74 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40256 213 + . gene_id 2 ; sequence NvOr18NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39939 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40256 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40256 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40256 213 + . alignment_id 2 ; Query NvOr18NTE ; Align 39939 322 183 ; Align 40200 383 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr18NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 329 -> 397 Target range: 34381 -> 34668 330 : GluSerMetGluIleGlyAsnAlaAlaTyrGlnCysAsnTrpTyrThrLeuProProSer : 349 :!!|||! |||!!:.!!|||:!!||||||:!!! |||||||||!.!:!! !!||| !! GlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProPro 34382 : CAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCA : 34439 350 : GluAlaLysCysLeuThrLeuIleMetIleArgAlaLysGlnProPheGluIleThrAla : 369 ||||||||||||||| !!!!|||||| !|||.!! !::|||.!! :!:|||||| GluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAla 34440 : GAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCA : 34499 370 : GlyLysPheAlaAlaPheSerLeuGluLeuTyrCysArg >>>> Target Intron : 383 |||||||||::!.!!||||||:!!|||:!!!:! !!! ! 83 bp GlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34500 : GGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt................... : 34543 384 : 1 >>>> IleLeuLysSerSerGlyGlyTyrLeuSerMetLeuLeuAlaVal : 397 |||||||||!!!:!! !||||||||||||:!:||||||.!!||| ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeuThrVal 34544 : ......agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTCACAGTT : 34668 vulgar: NvOr18NTE 329 397 . KQ414804.1 34381 34668 + 180 M 53 159 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34382 34668 180 + . gene_id 3 ; sequence NvOr18NTE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34382 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34382 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34668 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34668 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34382 34668 180 + . alignment_id 3 ; Query NvOr18NTE ; Align 34382 330 159 ; Align 34624 383 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr18NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 179 Query range: 166 -> 262 Target range: 36764 -> 37052 167 : LeuTyrMetSerAlaGluPhePheTyrAspIleGlnSerSerProAsnTyrGluIleIle : 186 ||| !!!: !!||| !||| ||||||! .!.!.!||||||||||||||||||! ! LeuLeuIleProAlaThrPheProTyrAspThrAsnLysSerProAsnTyrGluIleThr 36765 : CTACTTATCCCGGCCACATTTCCATACGACACGAATAAAAGTCCTAATTACGAAATTACT : 36822 187 : TrpLeuPheGlnPheLeuSerThrMetPheAlaAlaSerAlaPheSerSerValAspAla : 206 |||||| ||||||:!!.!!|||:!!!!.::!|||! !..!!:!|||!!! !!|||.!! TrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSerCysPheAspThr 36823 : TGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGATACG : 36882 207 : PhePheAlaValLeuValLeuHisLeuCysGlyGlnLeuAsnAsnLeuLysGluLysLeu : 226 ||| !!||||||||||||||||||:!!||||||||||||!.! !|||::: ||| PheValAlaValLeuValLeuHisIleCysGlyGlnLeuThrValLeuArgIleAlaLeu 36883 : TTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTC : 36942 227 : LysAsnPheProLysArgHisGluGluGlyGluIleGlnSerPheLeuHisMetPheSer : 246 :!!|||.!! !!!!.! ! !:!!! !.!. !...!.!|||! !.!. !!..!! GluAsnLeuAlaAsnThrThrIleLysAspAsnTyrSerLysPheGlnGluArgLeuGly 36943 : GAGAATCTTGCTAACACGACAATAAAAGACAACTACAGCAAGTTCCAAGAACGATTAGGA : 37002 247 : AspIleValValArgHisGluAlaLeuAsnLysPheAlaAsnThrIle : 262 !!|||||| !|||!!..!. !||| !!:!! ||||||||| TyrIleValHisArgGlnAsnGlnLeuPheArg***MetAsnThrIle 37003 : TACATTGTGCACAGGCAGAATCAATTGTTCAGGTGAATgaatacgatt : 37052 vulgar: NvOr18NTE 166 262 . KQ414804.1 36764 37052 + 179 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36765 37052 179 + . gene_id 4 ; sequence NvOr18NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36765 37052 . + . KQ414804.1 exonerate:protein2genome:local exon 36765 37052 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36765 37052 179 + . alignment_id 4 ; Query NvOr18NTE ; Align 36765 167 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr18NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 6 -> 86 Target range: 44122 -> 44362 7 : GlyAlaThrArgAlaValLeuCysPheLeuGlyValTrpProAspIleLysArgLysLys : 26 ||| !!.!!.! !..!:!! ! |||:!!|||:!!||||||::: :::::: ... GlyTrpAsnHisTyrThrMetArgPheMetGlyIleTrpProGluGluArgLysTrpAsn 44123 : GGTTGGAACCATTACACCATGAGGTTCATGGGAATCTGGCCagaggaaagaaaatggaaC : 44180 27 : LeuIleSerArgThrArgPheLeuLeuProThrLeuIleMetLeuTyrPheAlaIleIle : 46 ! ! !|||!!! !! ! !|||:!!|||..!|||!!:|||!!! !|||!.! !:!! GlnProSerSerTyrLeuAlaLeuIleProValLeuMetMetPheLeuPheValCysVal 44181 : CAACCATCGAGTTACCTAGCTCTAATACCAGTTCTCATGATGTTTCTCTTCGTTTGTGTC : 44240 47 : ProGlnThrThrMetAlaIleLysValTrpGlyAspLeuAsnAlaValLeuGluValLeu : 66 |||||||||! !! ! ! :!!|||||||||!!!||| !|||:!!||| !||| ProGlnThrIleAsnLeuSerPheIleTrpGlyAspPheAsnLeuValValGluAsnLeu 44241 : CCACAAACGATCAATCTTTCATTCATCTGGGGTGATTTTAATTTAGTGGTAGAGAATCTA : 44300 67 : ThrIleSerAspIleSerIleAlaIleAlaLeuPheLysMetLeuGlyLeuTrpHisAsn : 86 :!!!!:.!!:!!|||!!!|||.!!|||:!!|||.!.|||! :!!!.!!!!||| !||| SerMetGlyAsnIleThrIleThrIleSerLeuLeuLysThrIleAlaPheTrpIleAsn 44301 : TCCATGGGTAACATAACAATCACTATTTCCCTTCTGAAGACCATCGCTTTTTGGATCAAC : 44360 vulgar: NvOr18NTE 6 86 . KQ414804.1 44122 44362 + 148 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44123 44362 148 + . gene_id 5 ; sequence NvOr18NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44123 44362 . + . KQ414804.1 exonerate:protein2genome:local exon 44123 44362 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44123 44362 148 + . alignment_id 5 ; Query NvOr18NTE ; Align 44123 7 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr18NTE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 166 -> 225 Target range: 44874 -> 45051 167 : LeuTyrMetSerAlaGluPhePheTyrAspIleGlnSerSerProAsnTyrGluIleIle : 186 ||| !.!. !!||| ! ||| !||||||! !.!. !|||||||||||||||.!!! ! LeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThr 44875 : CTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACA : 44932 187 : TrpLeuPheGlnPheLeuSerThrMetPheAlaAlaSerAlaPheSerSerValAspAla : 206 !:!! !|||.!!:!!:!!.!!.!.!:!||||||!!!.!!!:!!!!:!!||||||.!! ValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThr 44933 : GTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACT : 44992 207 : PhePheAlaValLeuValLeuHisLeuCysGlyGlnLeuAsnAsnLeuLysGluLys : 225 |||.!!!.!:!!|||:!!||||||:!!||||||||||||:::||||||!:!.!.:!! PheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArgAsnGlu 44993 : TTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGAAACGAA : 45051 vulgar: NvOr18NTE 166 225 . KQ414804.1 44874 45051 + 140 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44875 45051 140 + . gene_id 6 ; sequence NvOr18NTE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44875 45051 . + . KQ414804.1 exonerate:protein2genome:local exon 44875 45051 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44875 45051 140 + . alignment_id 6 ; Query NvOr18NTE ; Align 44875 167 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr30PSE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 190 Query range: 267 -> 392 Target range: 51512 -> 52050 268 : AlaGlnGluIleGluAsnIlePheAsnIleIlePheLeuGlyGluIleIleGlyCysThr : 287 |||:!! !||||||..! !||||||!!:!!:.!!||| !:!!!!::!!||||||||| AlaGluThrIleGluArgCysPheAsnMetMetLeuLeuIleGlnMetLeuGlyCysThr 51513 : GCAGAAACGATAGAGCGTTGTTTCAATATGATGCTTCTGATTCAGATGCTCGGTTGTACC : 51570 288 : ValGlnPheCysLeuGlnGlyPheTyr >>>> Target Intron 1 >>>> MetP : 298 ||||||.!.|||!!!||| !!||| ! 163 bp .!.! ValGlnLeuCysPheGlnCysPheGln+- -+PheT 51571 : GTTCAGCTATGCTTCCAGTGTTTCCAAgc.........................tgTTCT : 51766 299 : heThrLeuAsnThrAspAspMetAlaAlaLeuIleLeuTyrIleIlePheMetIlePheP : 318 :!..!:!! !!..! ... ! !||| !! !|||:!: ! ! !:!!! ! yrValValTyrValMetLeuGlnLeuPheLeuTyrCysTyrValGlyGluArgLeuSerV 51767 : ACGTGGTTTACGTGATGCTACAATTATTCTTGTATTGTTACGTGGGTGAAAGGCTTTCCG : 51826 319 : heMetGlyHisIleGlySerHisLeuPheIleCysCysTyrValSerGluLysLeuLysV : 338 !! !! !:!! !..! !:!! !||||||... !!! ::: ... alGluValAsnAspAsnValAsnThrPheIleAlaSerCysHis***LysPhePheThrP 51827 : TTGAGGTAAATGATAATGTTAATACTTTTATTGCAAGTTgtcattaaaaattcttcactt : 51886 339 : alGluSerThrSerIleAlaLysAlaAlaTyrGluCysGlnTrpTyrAspLeuSerProL : 358 ::!|||..!..!||||||!!.|||||||||!!:! !:!!||||||:!!|||||||||| heGlnSerValGluIleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProL 51887 : ttcaGAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGA : 51946 359 : ysAspIleMetLeuLeuValMetValIleAsnArgAlaLysAspProIleGluIleThrA : 378 ||:!! !! !||||||:!!!!::!!!!:...||||||!:! |||:!!:!!||||||| ysAsnAlaLysLeuLeuLeuIleIleMetArgArgAlaArgLeuProLeuGlnIleThrA 51947 : AAAATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTG : 52006 379 : laGlyLysPheCysThrTyrSerLeuSerLeuTyrAlaGlnIle : 392 |||||!:!|||..!|||!:!!!!|||! !||||||:!!|||:!: laGlyArgPheAlaThrPheThrLeuMetLeuTyrSerGlnVal 52007 : CAGGTAGATTTGCTACTTTCACTCTGATGCTGTATTCACAGGTa : 52050 vulgar: NvOr30PSE 267 392 . KQ414804.1 51512 52050 + 190 M 29 87 5 0 2 I 0 159 3 0 2 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51513 52050 190 + . gene_id 1 ; sequence NvOr30PSE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51513 51599 . + . KQ414804.1 exonerate:protein2genome:local exon 51513 51599 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51600 51601 . + . intron_id 1 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 51600 51762 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51761 51762 . + . intron_id 0 ; splice_site "TG" KQ414804.1 exonerate:protein2genome:local cds 51763 52050 . + . KQ414804.1 exonerate:protein2genome:local exon 51763 52050 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51513 52050 190 + . alignment_id 1 ; Query NvOr30PSE ; Align 51513 268 87 ; Align 51763 297 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr30PSE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 187 Query range: 330 -> 410 Target range: 39938 -> 40256 331 : TyrValSerGluLysLeuLysValGluSerThrSerIleAlaLysAlaAlaTyrGluCys : 350 |||::: ::: ... ||||||.!!|||!.!:!!:!!||||||!!:||| TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 351 : GlnTrpTyrAspLeuSerProLysAspIleMetLeuLeuValMetValIleAsnArgAla : 370 .!.|||||||||||| !!|||||| !! !:!:! !||||||!!:|||||| !|||||| AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 371 : LysAspProIleGluIleThrAlaGlyLysPheCysThrTyrSerLeuSerLeuTyrAla : 390 :!!! !!.!!:!!|||||||||||||||||| !! !!!:!||||||..!|||!:! ! GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsn 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAAC : 40116 391 : Gln >>>> Target Intron 1 >>>> IlePheLysThrSerGlyGlyTyrLeuS : 401 78 bp :!!!!.|||||||||!.!|||||||||| Ala++ ++ValLeuLysThrSerAlaGlyTyrLeuS 40117 : GCTgt.........................agGTTTTAAAAACGTCTGCTGGATATCTTT : 40227 402 : erMetLeuLeuAlaValArgAspLysIle : 410 ||:!!|||||||||:!!!:!|||!:!:!: erValLeuLeuAlaMetLysAspArgLeu 40228 : CCGTGTTGCTAGCTATGAAAGACAGACTG : 40256 vulgar: NvOr30PSE 330 410 . KQ414804.1 39938 40256 + 187 M 61 183 5 0 2 I 0 74 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40256 187 + . gene_id 2 ; sequence NvOr30PSE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39939 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40256 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40256 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40256 187 + . alignment_id 2 ; Query NvOr30PSE ; Align 39939 331 183 ; Align 40200 392 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr30PSE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 338 -> 406 Target range: 34381 -> 34668 339 : GluSerThrSerIleAlaLysAlaAlaTyrGluCysGlnTrpTyrAspLeuSerProLys : 358 :!!|||! !..!!!:::!!!.:!!|||||||||! .!.||||||:!!:!!|||||| ! GlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProPro 34382 : CAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCA : 34439 359 : AspIleMetLeuLeuValMetValIleAsnArgAlaLysAspProIleGluIleThrAla : 378 !!: !! !! !|||:!!.!.:!!!!::!!|||.!! !|||:!! :!:|||||| GluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAla 34440 : GAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCA : 34499 379 : GlyLysPheCysThrTyrSerLeuSerLeuTyrAlaGln >>>> Target Intron : 392 ||||||||| !!|||!:!|||:!!..!:!!!:!::! 83 bp GlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34500 : GGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt................... : 34543 393 : 1 >>>> IlePheLysThrSerGlyGlyTyrLeuSerMetLeuLeuAlaVal : 406 |||.!.||||||:!! !||||||||||||:!:||||||.!!||| ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeuThrVal 34544 : ......agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTCACAGTT : 34668 vulgar: NvOr30PSE 338 406 . KQ414804.1 34381 34668 + 146 M 53 159 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34382 34668 146 + . gene_id 3 ; sequence NvOr30PSE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34382 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34382 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34668 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34668 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34382 34668 146 + . alignment_id 3 ; Query NvOr30PSE ; Align 34382 339 159 ; Align 34624 392 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr31 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 272 Query range: 245 -> 381 Target range: 51479 -> 52050 246 : IleIleIleArgHisGlnPheLeuPheArgPheSerGlnIleIleGluLysIlePheAsn : 265 ::::::||| ! ! !.!.||||||:!!:!!! ||||||::: !|||||| LeuLeuIleAlaSerTyrAlaCysLeuArgPheAlaGluThrIleGluArgCysPheAsn 51480 : ttattaattgcatCGTATGCGTGTCTAAGGTTCGCAGAAACGATAGAGCGTTGTTTCAAT : 51537 266 : ValIlePheLeuGlyGluIleLeuGlyCysThrIleGlnPheCysLeu{Gl} >>>> T : 282 :!!!!:.!!||| !:!!!!:||||||||||||:!!|||.!.|||!!!{||} MetMetLeuLeuIleGlnMetLeuGlyCysThrValGlnLeuCysPhe{Gl}++ 51538 : ATGATGCTTCTGATTCAGATGCTCGGTTGTACCGTTCAGCTATGCTTC{CA}gt...... : 51592 283 : arget Intron 1 >>>> {n}GlyPhePheLeuCysThrLeuSerThrGluAspVal : 294 103 bp {|}...||| !|||! :!!:!!..! !||| ! ! +-{n}AsnPheAspLeu***SerIleAspGluGluIleAsp 51593 : ...................ac{g}aattttgaTTTGTAGTCAATTGACGAGGAAATAGAT : 51727 295 : GlyLeuLeuValMetTyrIlePhePheMetValPhePheIleGlyHisIleGlySerHis : 314 ! ! !::::::... |||...|||:!!:!!|||!:!:!:! !:!!:!: ! !!!. GluAsnMetIlePheGlnIleLeuPheLeuLeuPheTyrValValTyrValMetLeuGln 51728 : GAAAACAtgattttccaaattctctTTTTGCTGTTCTACGTGGTTTACGTGATGCTACAA : 51787 315 : LeuPheIleCysCysTyrValSerGluArgLeuGlnAspGlu >>>> Target Intr : 329 ||||||:!:! !|||||||||.!!|||||||||...! !||| 60 bp LeuPheLeuTyrCysTyrValGlyGluArgLeuSerValGlu++ 51788 : TTATTCTTGTATTGTTACGTGGGTGAAAGGCTTTCCGTTGAGgt................ : 51834 330 : on 2 >>>> SerValSerIleAlaAsnAlaAlaTyrLysCysGlnTrpTyrHisLeuP : 345 ||||||..!|||||||||||||||||| ! ! !:!!||||||:!!||| ++SerValGluIleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuS 51835 : .........agAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAATGGTACAATTTGT : 51940 346 : roAlaLysAspValMetLeuLeuValMetValIleAsnArgAlaLysAspProIleGlnI : 365 !! !!|||:!!!.!! !||||||:!!!!::!!!!:...||||||!:! |||:!!|||| erProLysAsnAlaLysLeuLeuLeuIleIleMetArgArgAlaArgLeuProLeuGlnI 51941 : CTCCGAAAAATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGTTACCTCTACAAA : 52000 366 : leThrAlaGlyLysPheCysValPheSerLeuSerLeuLeuAlaGlnIle : 381 |||||||||||!:!|||..!..!|||!!!|||! !|||! !:!!|||:!: leThrAlaGlyArgPheAlaThrPheThrLeuMetLeuTyrSerGlnVal 52001 : TCACTGCAGGTAGATTTGCTACTTTCACTCTGATGCTGTATTCACAGGTa : 52050 vulgar: NvOr31 245 381 . KQ414804.1 51479 52050 + 272 M 36 108 S 0 2 5 0 2 I 0 99 3 0 2 S 1 1 M 46 138 5 0 2 I 0 56 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51480 52050 272 + . gene_id 1 ; sequence NvOr31 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51480 51589 . + . KQ414804.1 exonerate:protein2genome:local exon 51480 51589 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51590 51591 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51590 51692 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51691 51692 . + . intron_id 0 ; splice_site "ac" KQ414804.1 exonerate:protein2genome:local cds 51693 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51693 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 1 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52050 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52050 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51480 52050 272 + . alignment_id 1 ; Query NvOr31 ; Align 51480 246 108 ; Align 51694 283 138 ; Align 51892 329 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr31 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 173 Query range: 328 -> 399 Target range: 39965 -> 40256 329 : SerValSerIleAlaAsnAlaAlaTyrLysCysGlnTrpTyrHisLeuProAlaLysAsp : 348 |||..!.!!|||!.!.!.:!!|||||| ! |||.!.|||||| !!|||||| !!||| !! SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 349 : ValMetLeuLeuValMetValIleAsnArgAlaLysAspProIleGlnIleThrAlaGly : 368 !.!:!:! !||||||!!:|||||| !||||||:!!! !!.!!||||||||||||||| AlaValSerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGly 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGA : 40083 369 : LysPheCysValPheSerLeuSerLeuLeuAlaGln >>>> Target Intron 1 > : 381 |||||| !! !|||||||||..!|||!!! ! 78 bp LysPheSerProPheSerLeuGluLeuPheAsnAla++ 40084 : AAATTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTgt...................... : 40124 382 : >>> IlePheLysThrSerGlyGlyTyrLeuSerMetLeuLeuAlaValArgAspLysI : 399 :!!!!.|||||||||!.!||||||||||||:!!|||||||||:!!!:!|||!:!: ++ValLeuLysThrSerAlaGlyTyrLeuSerValLeuLeuAlaMetLysAspArgL 40125 : ...agGTTTTAAAAACGTCTGCTGGATATCTTTCCGTGTTGCTAGCTATGAAAGACAGAC : 40254 400 : le : 399 !: eu 40255 : TG : 40256 vulgar: NvOr31 328 399 . KQ414804.1 39965 40256 + 173 M 52 156 5 0 2 I 0 74 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40256 173 + . gene_id 2 ; sequence NvOr31 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39966 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40256 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40256 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39966 40256 173 + . alignment_id 2 ; Query NvOr31 ; Align 39966 329 156 ; Align 40200 381 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr31 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 90 -> 230 Target range: 31101 -> 31521 91 : PheIleTyrTyrArgGluAlaLeuLeuProLeuLeuAlaTyrAlaSerSerAspTrpLys : 110 ......::::::...:::|||.!! !|||:!!:!! !! ! !! !..!||||||||| IlePheHisPheAsnLysAlaPheLysProValIleLysSerPheTyrAspAspTrpLys 31102 : atttttcattttaacaaagcttTCAAGCCCGTTATAAAATCCTTCTACGACGATTGGAAA : 31159 111 : LysProLysSerSerLeuGluAlaAlaAsnMetTrpSerAsnAlaArgThrAlaArgGln : 130 ! !!!:!!!:... ||| ..!|||! !!.!!..|||!:! !|||!:!||| ThrSerArgThrLysGluGluLysGluThrMetLeuLysArgAlaLysPheAlaLysGln 31160 : ACCTCAAGGACcaaggaggagaaggagacCATGTTGAAGAGAGCCAAATTTGCGAAACAA : 31219 131 : LeuSerIleThrCysLeuPheIleGlyLeuSerAlaValAsnTyrHisMetAlaValArg : 150 :!!|||||| !|||! ! ! :!! !|||!!! !|||!.! !:!!:!:::!:!!||| IleSerIleTrpCysSerValLeuThrLeuThrMetValThrValTyrLeuSerLeuArg 31220 : ATTTCCATCTGGTGCTCAGTATTAACCTTGACCATGGTCACTGTTTATCTAAGTCTTCGA : 31279 151 : IleCysGlnGluLeuArgIleIleProGlyLysThrLysValGluArgGluLeuTyrPhe : 170 !! ! !!:!:!! ! !!.!!!. !||| !!!:||| !||| !:! AlaTrpIleIleTyrGlnLeuAspArgAlaAsnGlnLysGlnAspArgLeuLeuLeuTyr 31280 : GCGTGGATCATCTACCAGCTTGATAGGGCAAACCAGAAACAGGATCGTCTGCTCCTGTAC : 31339 171 : AsnAlaTyrPheProTyrAsnTyrThrGluSerProAlaTyrGluLeuThrPheAlaMet : 190 !!.!|||||||||!:!:!! ! ! !! ! !!.! !! !||| ! ! ProGlyTyrPheProPheAspIleArgProIleGlyValLeuLeuSerThrAsnPheGly 31340 : CCTGGCTATTTTCCCTTCGATATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGC : 31399 191 : GlnTyrPheAlaThrValLeuAlaThrPheSerTyrSerGlyLeuTyrGlyLeuPheVal : 210 ||| .!!|||.!! !! !|||..!.!!||||||!!! !:!! !! !!!!.!!!.! GlnValLeuAlaAlaTyrSerAlaValIleSerTyrThrThrValAspThrPheIleAla 31400 : CAAGTGCTCGCAGCGTATTCCGCTGTTATCAGTTACACCACCGTGGATACATTTATCGCG : 31459 211 : GlyLeuMetLeuHisLeuCysGlyGlnPheAlaAsnLeuArgValLysMetAspLysVal : 230 !|||!!::!!|||:!!||||||||||||! !! |||||| !|||:!: !:!:!! MetLeuIleMetHisIleCysGlyGlnPheGluIleLeuArgGlnLysLeuArgArgLeu 31460 : ATGCTGATAATGCACATATGCGGACAATTTGAGATACTGAGACAGAAATTACGAAGGCTG : 31519 vulgar: NvOr31 90 230 . KQ414804.1 31101 31521 + 156 M 140 420 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31102 31521 156 + . gene_id 3 ; sequence NvOr31 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31102 31521 . + . KQ414804.1 exonerate:protein2genome:local exon 31102 31521 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 31102 31521 156 + . alignment_id 3 ; Query NvOr31 ; Align 31102 91 420 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr31 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 166 -> 256 Target range: 44871 -> 45138 167 : GluLeuTyrPheAsnAlaTyrPheProTyrAsnTyrThrGluSerProAlaTyrGluLeu : 186 ..!||| !|||..!|||||||||||||||:!! ! !! |||||| !||||||!!! ArgLeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPhe 44872 : AGACTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTT : 44929 187 : ThrPheAlaMetGlnTyrPheAlaThrValLeuAlaThrPheSerTyrSerGlyLeuTyr : 206 ||| ! ! ||| !.!.|||.!! !!! !|||.!! !!!!|||!!!!.!:!! !! ThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAsp 44930 : ACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGAT : 44989 207 : GlyLeuPheValGlyLeuMetLeuHisLeuCysGlyGlnPheAlaAsnLeuArgValLys : 226 !!!!.!!||| !|||!!:||||||:!!|||||||||.!!:!!||||||||| !:!! ThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArgAsnGlu 44990 : ACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGAAACGAA : 45049 227 : MetAspLysValAlaLysGlnAlaAspSerAlaLysPheArgGlnAsnLeuThrAlaIle : 246 .!.! !|||:!! :!! !..!|||!.!!.!! !!!.!:! !!!.||| ! !||| PheGlyLysLeu---GlnAlaCysAspLysValThrLeuGlnAlaLysLeuGlyLysIle 45050 : TTCGGTAAGCTT---CAAGCATGCGATAAAGTAACATTACAGGCGAAGTTGGGGAAAATC : 45106 247 : IleIleArgHisGlnPheLeuPheArgPhe : 256 :!: !:!|||:!!!:!||| !|||||| ValGlnLysHisGluTyrLeuAsnArgPhe 45107 : GTGCAGAAACACGAATATCTTAACAGGTTC : 45138 vulgar: NvOr31 166 256 . KQ414804.1 44871 45138 + 149 M 64 192 G 1 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44872 45138 149 + . gene_id 4 ; sequence NvOr31 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44872 45138 . + . KQ414804.1 exonerate:protein2genome:local exon 44872 45138 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 44872 45138 149 + . alignment_id 4 ; Query NvOr31 ; Align 44872 167 192 ; Align 45064 232 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr31 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 86 -> 231 Target range: 36527 -> 36956 87 : LysThrLeuValPheIleTyrTyrArgGluAlaLeuLeuProLeuLeuAlaTyrAlaSer : 106 ||| ::: |||::: ! !||||||:!! !|||:!!::! ! !! ! LysLeuIlePheThrIleHisThrSerLeuAlaLeuValPheLeuMetSerGlnIlePhe 36528 : AAACtgattttcacaattcacACGTCTCTAGCGCTAGTATTCTTAATGAGCCAAATATTC : 36585 107 : SerAspTrpLysLysProLysSerSerLeuGluAlaAlaAsnMetTrpSerAsnAlaArg : 126 ..!|||||| !:!!|||! !!..!:!!!!: ! !!..||| !!.!!.!|||!:! AspAspTrpAlaGluProIleProGluValAspArgHisThrMetLeuLysThrAlaLys 36586 : GACGACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACGATGCTGAAGACCGCGAAA : 36645 127 : ThrAlaArgGlnLeuSerIleThrCysLeuPheIleGlyLeuSerAlaValAsnTyrHis : 146 ! !::!|||..!:!!||||||..!|||! !.!!:!: !! ! ! !||| ! ! IleSerArgMetIleSerIleValCysSerIleLeuThrTyrValMetValLeuAlaPhe 36646 : ATTAGTCGAATGATATCCATAGTCTGTTCTATCCTGACGTATGTCATGGTTTTGGCCTTC : 36705 147 : MetAlaValArgIleCysGlnGluLeuArgIleIleProGlyLysThrLysValGluArg : 166 :!!:!!:!!!:!|||!! ......:!!!:! ! ! !!..!:!! !!!.||| !! LeuSerLeuGlnIleTrpSerSerMetGln---AsnThrSerGluPheAsnVal---Gly 36706 : TTGTCACTTCAAATTTGGAGCAGCATGCAA---AACACCTCGGAGTTCAACGTA---GGA : 36759 167 : GluLeuTyrPheAsnAlaTyrPheProTyrAsnTyrThrGluSerProAlaTyrGluLeu : 186 ! !||| !.!! ||| |||||||||:!! !.!:!!|||||| !||||||:!! GlyLeuLeuIleProAlaThrPheProTyrAspThrAsnLysSerProAsnTyrGluIle 36760 : GGACTACTTATCCCGGCCACATTTCCATACGACACGAATAAAAGTCCTAATTACGAAATT : 36819 187 : ThrPheAlaMetGlnTyrPheAlaThrValLeuAlaThrPheSerTyrSerGlyLeuTyr : 206 |||!:: ! |||!:! ! !.!|||||||||::!.!!.!.!!!|||||| !!!!! !! ThrTrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSerCysPheAsp 36820 : ACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGAT : 36879 207 : GlyLeuPheValGlyLeuMetLeuHisLeuCysGlyGlnPheAlaAsnLeuArgValLys : 226 !!!! !!!.!! !|||:!!||||||:!!|||||||||!!..!! !||||||:!! ThrPheValAlaValLeuValLeuHisIleCysGlyGlnLeuThrValLeuArgIleAla 36880 : ACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACTGTTCTCCGCATTGCC : 36939 227 : MetAspLysValAla : 231 :!:!!:!!.:!!||| LeuGluAsnLeuAla 36940 : CTCGAGAATCTTGCT : 36956 vulgar: NvOr31 86 231 . KQ414804.1 36527 36956 + 148 M 70 210 G 1 0 M 7 21 G 1 0 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36528 36956 148 + . gene_id 5 ; sequence NvOr31 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36528 36956 . + . KQ414804.1 exonerate:protein2genome:local exon 36528 36956 . + . insertions 0 ; deletions 2 KQ414804.1 exonerate:protein2genome:local similarity 36528 36956 148 + . alignment_id 5 ; Query NvOr31 ; Align 36528 87 210 ; Align 36738 158 21 ; Align 36759 166 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr31 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 327 -> 395 Target range: 34381 -> 34668 328 : GluSerValSerIleAlaAsnAlaAlaTyrLysCysGlnTrpTyrHisLeuProAlaLys : 347 :!!||| !..!!!:::!|||:!!||||||:!!! .!.||||||:!!:!! !! !! ! GlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProPro 34382 : CAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCA : 34439 348 : AspValMetLeuLeuValMetValIleAsnArgAlaLysAspProIleGlnIleThrAla : 367 !!:!.!! !! !|||:!!.!.:!!!!::!!|||.!! !|||:!! :!:|||||| GluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAla 34440 : GAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCA : 34499 368 : GlyLysPheCysValPheSerLeuSerLeuLeuAlaGln >>>> Target Intron : 381 ||||||||| !!..!||||||:!!..!:!!!!!::! 83 bp GlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34500 : GGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt................... : 34543 382 : 1 >>>> IlePheLysThrSerGlyGlyTyrLeuSerMetLeuLeuAlaVal : 395 |||.!.||||||:!! !||||||||||||:!:||||||.!!||| ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeuThrVal 34544 : ......agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTCACAGTT : 34668 vulgar: NvOr31 327 395 . KQ414804.1 34381 34668 + 130 M 53 159 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34382 34668 130 + . gene_id 6 ; sequence NvOr31 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34382 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34382 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34668 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34668 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34382 34668 130 + . alignment_id 6 ; Query NvOr31 ; Align 34382 328 159 ; Align 34624 381 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr19 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 202 Query range: 298 -> 405 Target range: 51726 -> 52364 299 : GlnAspGlyLeuLeuValGluMetIlePheIleSerTyrPheThrIleCysPheThrPhe : 318 .!.!!:..!:::::: :::::::::|||:!: !!:!!:!..!:!!! ! ! ! !.!. AspGluAsnMetIlePheGlnIleLeuPheLeuLeuPheTyrValValTyrValMetLeu 51727 : GATGAAAACAtgattttccaaattctctTTTTGCTGTTCTACGTGGTTTACGTGATGCTA : 51784 319 : SerIlePheValTyrCysTyrValAlaGluLeuLeuGlnGluLys >>>> Target I : 334 ..!:!!|||:!!||||||||||||!.!||| !|||...! :!! 60 GlnLeuPheLeuTyrCysTyrValGlyGluArgLeuSerValGlu++ 51785 : CAATTATTCTTGTATTGTTACGTGGGTGAAAGGCTTTCCGTTGAGgt............. : 51834 335 : ntron 1 >>>> SerLeuGlnLeuGlyTyrAlaIlePheTyrSerLysTrpTyrAsnL : 349 bp |||:!!:!!:!!!.! !!||| !!:! !!|||:!!|||||||||| ++SerValGluIleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnL 51835 : ............agAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAATGGTACAATT : 51937 350 : euProAlaLysLysAlaArgLeuLeuIleIleSerIleValArgCysLysArgProLeuG : 369 || !! !!|||!!.|||!:!||||||:!!|||! !!!: !|||..!!:! !||||||: euSerProLysAsnAlaLysLeuLeuLeuIleIleMetArgArgAlaArgLeuProLeuG 51938 : TGTCTCCGAAAAATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGTTACCTCTAC : 51997 370 : luIleSerAlaGlyLysPheCysIlePheSerLeuAsnLeuPheCysAsn >>>> Tar : 386 !!|||!!!||||||!:!|||..!! !|||!!!|||! |||!:!! .!. lnIleThrAlaGlyArgPheAlaThrPheThrLeuMetLeuTyrSerGln++ 51998 : AAATCACTGCAGGTAGATTTGCTACTTTCACTCTGATGCTGTATTCACAGgt........ : 52050 387 : get Intron 2 >>>> IleValArgThrSerAla<-><->GlyTyrMetSerValLe : 397 251 bp |||:!!!:!||||||!.! ||||||:!:|||||||| ++IleLeuLysThrSerValGlyLysGlyTyrValSerValLe 52051 : .................agATTTTAAAAACCTCGGTGGGAAAAGGTTATGTTTCTGTTCT : 52338 398 : uLeuAlaValLysAspLysIleThr : 405 |! !|||:!!||| !!||| ||| uTyrAlaMetLysTyrLysGluThr 52339 : ATACGCAATGAAATATAAAGAGACG : 52364 vulgar: NvOr19 298 405 . KQ414804.1 51726 52364 + 202 M 35 105 5 0 2 I 0 56 3 0 2 M 52 156 5 0 2 I 0 247 3 0 2 M 6 18 G 0 6 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51727 52364 202 + . gene_id 1 ; sequence NvOr19 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51727 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51727 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52047 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52047 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 52048 52049 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 52048 52298 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 52297 52298 . + . intron_id 1 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 52299 52364 . + . KQ414804.1 exonerate:protein2genome:local exon 52299 52364 . + . insertions 6 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51727 52364 202 + . alignment_id 1 ; Query NvOr19 ; Align 51727 299 105 ; Align 51892 334 156 ; Align 52299 386 18 ; Align 52323 392 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr19 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 171 -> 265 Target range: 44874 -> 45147 172 : LeuPhePheIleGlyLysPheProPheAspProGlnSerTyrProAsnTyrGlnIleThr : 191 |||.!!||| !!.! ! ||||||!:!||| !.!. ! !|||||||||:!!.!!||| LeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThr 44875 : CTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACA : 44932 192 : TrpThrLeuGlnIleIleAlaThrPheLeuAlaAlaGlyAlaPheSerSerValAspAla : 211 !! ! !||||||||||||.!!|||! !|||||| !.!!!:!!!!:!!||||||.!! ValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThr 44933 : GTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACT : 44992 212 : LeuPheValThrLeuValLeuHisLeuCysGlyGlnLeuThrAsnLeuGlnAlaAlaPhe : 231 !!!.!!|||! !|||:!!||||||:!!||||||||||||:!!||||||::! !! !||| PheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArgAsnGluPhe 44993 : TTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGAAACGAATTC : 45052 232 : SerGluIleGlyGluGluAsnAlaGluLysGlyThrMetPheValSerLysLeuSerLys : 251 .!!:!!:!! :!! ..!!!:|||! !|||:!: !:!!||||||.!!||| GlyLysLeu------GlnAlaCysAspLysValThrLeu---GlnAlaLysLeuGlyLys 45053 : GGTAAGCTT------CAAGCATGCGATAAAGTAACATTA---CAGGCGAAGTTGGGGAAA : 45103 252 : LeuIleGluArgHisArgLysIleAsnValPheAlaAspIle : 265 :!!:!::!!!:!|||..! ! :!!||| !|||!.!...:!: IleValGlnLysHisGluTyrLeuAsnArgPheValSerLeu 45104 : ATCGTGCAGAAACACGAATATCTTAACAGGTTCGTATCATTG : 45147 vulgar: NvOr19 171 265 . KQ414804.1 44874 45147 + 160 M 63 189 G 2 0 M 8 24 G 1 0 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44875 45147 160 + . gene_id 2 ; sequence NvOr19 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44875 45147 . + . KQ414804.1 exonerate:protein2genome:local exon 44875 45147 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 44875 45147 160 + . alignment_id 2 ; Query NvOr19 ; Align 44875 172 189 ; Align 45064 237 24 ; Align 45088 246 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr19 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 324 -> 404 Target range: 39938 -> 40256 325 : TyrValAlaGluLeuLeuGlnGluLysSerLeuGlnLeuGlyTyrAlaIlePheTyrSer : 344 |||:::...:::::: ... ||| ! !:!!||| ! :!! !!:! !!!!! TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 345 : LysTrpTyrAsnLeuProAlaLysLysAlaArgLeuLeuIleIleSerIleValArgCys : 364 !!.||||||:!!|||||| !!||| ! ||| !! !|||:!!||| !||| !|||... AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 365 : LysArgProLeuGluIleSerAlaGlyLysPheCysIlePheSerLeuAsnLeuPheCys : 384 :!! ! !!!!!:!!|||!!!|||||||||||| !! !|||||||||.!.|||||| ! GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsn 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAAC : 40116 385 : Asn >>>> Target Intron 1 >>>> IleValArgThrSerAlaGlyTyrMetS : 395 ! 78 bp :!!:!!!:!|||||||||||||||:!:| Ala++ ++ValLeuLysThrSerAlaGlyTyrLeuS 40117 : GCTgt.........................agGTTTTAAAAACGTCTGCTGGATATCTTT : 40227 396 : erValLeuLeuAlaValLysAspLysIle : 404 ||||||||||||||:!!||||||!:!:!: erValLeuLeuAlaMetLysAspArgLeu 40228 : CCGTGTTGCTAGCTATGAAAGACAGACTG : 40256 vulgar: NvOr19 324 404 . KQ414804.1 39938 40256 + 155 M 61 183 5 0 2 I 0 74 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40256 155 + . gene_id 3 ; sequence NvOr19 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39939 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40256 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40256 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40256 155 + . alignment_id 3 ; Query NvOr19 ; Align 39939 325 183 ; Align 40200 386 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr19 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 171 -> 259 Target range: 36764 -> 37031 172 : LeuPhePheIleGlyLysPheProPheAspProGlnSerTyrProAsnTyrGlnIleThr : 191 |||.!!.!! !.!! !||||||!:!||| !!.!.!.! !|||||||||:!!|||||| LeuLeuIleProAlaThrPheProTyrAspThrAsnLysSerProAsnTyrGluIleThr 36765 : CTACTTATCCCGGCCACATTTCCATACGACACGAATAAAAGTCCTAATTACGAAATTACT : 36822 192 : TrpThrLeuGlnIleIleAlaThrPheLeuAlaAlaGlyAlaPheSerSerValAspAla : 211 ||| ! !|||.!!:!:!.!||| ! |||::!||| !..!!:!|||!!! !!|||.!! TrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSerCysPheAspThr 36823 : TGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGATACG : 36882 212 : LeuPheValThrLeuValLeuHisLeuCysGlyGlnLeuThrAsnLeuGlnAlaAlaPhe : 231 !!! !!!.!..!||||||||||||:!!||||||||||||||| !|||!:: !|||.!! PheValAlaValLeuValLeuHisIleCysGlyGlnLeuThrValLeuArgIleAlaLeu 36883 : TTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTC : 36942 232 : SerGluIleGlyGluGluAsnAlaGluLysGly<->ThrMetPheValSerLysLeuSer : 250 ..!.!.:!!!.!.!. !!.. !:!! ! ..! !:!! !||| !..!::!|||.!! GluAsnLeuAlaAsnThrThrIleLysAspAsnTyrSerLysPheGlnGluArgLeuGly 36943 : GAGAATCTTGCTAACACGACAATAAAAGACAACTACAGCAAGTTCCAAGAACGATTAGGA : 37002 251 : LysLeuIleGluArgHisArgLysIle : 259 ! :!!:!:.!.|||!!.!.!:!!:!: TyrIleValHisArgGlnAsnGlnLeu 37003 : TACATTGTGCACAGGCAGAATCAATTG : 37031 vulgar: NvOr19 171 259 . KQ414804.1 36764 37031 + 142 M 71 213 G 0 3 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36765 37031 142 + . gene_id 4 ; sequence NvOr19 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36765 37031 . + . KQ414804.1 exonerate:protein2genome:local exon 36765 37031 . + . insertions 3 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36765 37031 142 + . alignment_id 4 ; Query NvOr19 ; Align 36765 172 213 ; Align 36981 243 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr28 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 278 Query range: 4 -> 248 Target range: 30782 -> 31575 5 : LysGlyPheLeuTyrAlaPheGlyMetCysLysLysSerLeuThrLeuIleGlyLeuTrp : 24 ..!|||!!. ! |||.!!||| ! !::: !!:!:!! !|||:!!|||:!!||| SerGlyLeuLysValAlaLeuGlyTrpAsnArgTrpAsnMetGluLeuValGlyIleTrp 30783 : TCAGGTTTGAAGGTAGCACTTGGATGGAACCGTTGGAACATGGAACTGGTTGGAATTTGG : 30840 25 : ProLysSerLysSerSerAsnTyrAlaGluAlaValValValLeuArgPheThrLeuThr : 44 |||:!! !!!..!!!|||:!! :!! ! ! ! !!!!!:! ! !||| ! ProGluProSerArgSerAsp------GlnArgTrpProAsnPheLysAlaLeuLeuPhe 30841 : CCAGAACCGAGCAGATCTGAT------CAACGATGGCCGAATTTCAAGGCTTTGCTGTTC : 30894 45 : ThrLeuLeuIleValSerPheValAsnIleValGlnThrIleLysLeuLeuAlaValTrp : 64 ! !!!!:::|||::: ||| ..! ! !|||!:!:!:!!.|||||| !:!!||| IlePheValIleIlePhePheGlyThrGlyProGlnSerValAsnLeuLeuPheIleTrp 30895 : ATTTTTGtgataatattttttggaaCCGGACCTCAGAGCGTGAATCTACTTTTCATATGG : 30954 65 : GlyAspLeuAspAlaMetThrAspIleIleSerThrAlaAsnLeuProIleAlaValAla : 84 |||||||||! !:!:|||!!:! !:!:||||||||||||:!!||| ! ! !||| GlyAspLeuGlyLeuValThrGluAsnLeuSerThrAlaAsnIleProGlyIleAsnAla 30955 : GGAGACCTTGGATTGGTCACGGAAAATCTGTCCACGGCTAATATTCCCGGCATAAACGCC : 31014 85 : ValPheLysMetMetValPheTyrLysHisArgLys{A} >>>> Target Intron : 97 :!!.!.|||:!!!!::!! !!:: ! |||||| ! {|} 67 bp MetMetLysLeuIleIleAlaTrpHisHisArgAsp{A}++ 31015 : ATGATGAAACTGATTATCGCCTGGCATCACAGAGAT{G}gt................... : 31056 98 : 1 >>>> {la}PheGluProLeuLeuSerPheValGluAlaAspTrpLysSerTyrLys : 113 {||}|||:!!|||:!!:!!!.!! ! !! ! ! !|||||||||!!!! !:! ++{la}PheLysProValIleLysSerPheTyrAspAspTrpLysThrSerArg 31057 : ......ag{ct}tTCAAGCCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGG : 31168 114 : ThrAspSerAspMetThrAsnMetTrpSerAsnAlaGlnThrThrArgArgIleSerMet : 133 ||| ...::: ..!|||! !!.!!..|||:!! !.!!!:!!:!||||||!!: ThrLysGluGluLysGluThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIle 31169 : ACcaaggaggagaaggagacCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATC : 31228 134 : IleCysValIleLeuGlyAlaGlyThrValAsnGlyHisLeuPheIleArgLeuGlyGln : 153 ||| !:!!||| ! ! !! !|||!.!! !:!!||| !:!!||| ! !! TrpCysSerValLeuThrLeuThrMetValThrValTyrLeuSerLeuArgAlaTrpIle 31229 : TGGTGCTCAGTATTAACCTTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATC : 31288 154 : GluAlaLysIleLeuProGlyLysAspGlyAlaThrArgLeuSerPheValAspSerTyr : 173 !:!!:!! ! !!.!!!..!. ! ! !|||||| !.!. ! !.!!||| IleTyrGlnLeuAspArgAlaAsnGlnLysGlnAspArgLeuLeuLeuTyrProGlyTyr 31289 : ATCTACCAGCTTGATAGGGCAAACCAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTAT : 31348 174 : PheProTyrAspTyrSerProThrProIleTyrGluIleThrTrpAlaIleGlnTyrIle : 193 ||||||!:!||| ! !!|||! ! !:!! ! ||| ! !||| :!! PheProPheAspIleArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeu 31349 : TTTCCCTTCGATATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTC : 31408 194 : GlyAlaAlaLeuAlaThrCysAlaTyrSerGlyIleTyrCysLeuPheValAlaLeuMet : 213 !.!||| !! !|||..! !::!|||!!! !:!: !! !!!.!!!.! !|||!!: AlaAlaTyrSerAlaValIleSerTyrThrThrValAspThrPheIleAlaMetLeuIle 31409 : GCAGCGTATTCCGCTGTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATA : 31468 214 : LeuHisLeuCysGlyGlnPheSerAsnLeuArgLysLysLeuArgArgValValThrAsn : 233 :!!|||:!!||||||||||||..!! ||||||:!!||||||||||||:!!:!! !:!! MetHisIleCysGlyGlnPheGluIleLeuArgGlnLysLeuArgArgLeuMetAspAsp 31469 : ATGCACATATGCGGACAATTTGAGATACTGAGACAGAAATTACGAAGGCTGATGGATGAC : 31528 234 : GluAspAspLysArgLysPheValGluLysLeuAlaGluIleVal : 248 ||| ! ! ! |||!.. ! ! !|||! ! ! !|||:!:||| GluLysLysThrArgSerValAspGluIleGlnLysGluLeuVal 31529 : GAGAAGAAGACCAGAAGCGTGGATGAGATTCAGAAGGAGCTGGTT : 31575 vulgar: NvOr28 4 248 . KQ414804.1 30782 31575 + 278 M 27 81 G 2 0 M 63 189 S 0 1 5 0 2 I 0 63 3 0 2 S 1 2 M 151 453 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 30783 31575 278 + . gene_id 1 ; sequence NvOr28 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 30783 31053 . + . KQ414804.1 exonerate:protein2genome:local exon 30783 31053 . + . insertions 0 ; deletions 2 KQ414804.1 exonerate:protein2genome:local splice5 31054 31055 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 31054 31120 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 31119 31120 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 31121 31575 . + . KQ414804.1 exonerate:protein2genome:local exon 31121 31575 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 30783 31575 278 + . alignment_id 1 ; Query NvOr28 ; Align 30783 5 81 ; Align 30864 34 189 ; Align 31123 98 453 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr28 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 330 -> 401 Target range: 39965 -> 40256 331 : SerValSerIleValArgAlaAlaTyrAsnCysGluTrpTyrAsnLeuSerAlaLysAsp : 350 |||..!.!!|||! !!:!:!!||||||:!!|||.!.||||||:!!||| !! !!||| !! SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 351 : AlaMetLeuLeuValMetIleMetAsnArgAlaLysLysProLeuArgIleThrAlaGly : 370 |||:!:! !||||||!!::!:!!: !||||||:!! ! !!!!!!:!|||||||||||| AlaValSerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGly 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGA : 40083 371 : LysPheCysAlaPheSerLeuSerLeuTyrAlaGln >>>> Target Intron 1 > : 383 |||||| !! !!|||||||||..!|||!:! ! 78 bp LysPheSerProPheSerLeuGluLeuPheAsnAla++ 40084 : AAATTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTgt...................... : 40124 384 : >>> IlePheLysThrSerGlyGlyTyrLeuSerMetLeuLeuAlaValArgAspArgI : 401 :!!!!.|||||||||!.!||||||||||||:!!|||||||||:!!!:!||||||: ++ValLeuLysThrSerAlaGlyTyrLeuSerValLeuLeuAlaMetLysAspArgL 40125 : ...agGTTTTAAAAACGTCTGCTGGATATCTTTCCGTGTTGCTAGCTATGAAAGACAGAC : 40254 402 : le : 401 !: eu 40255 : TG : 40256 vulgar: NvOr28 330 401 . KQ414804.1 39965 40256 + 171 M 52 156 5 0 2 I 0 74 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40256 171 + . gene_id 2 ; sequence NvOr28 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39966 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40256 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40256 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39966 40256 171 + . alignment_id 2 ; Query NvOr28 ; Align 39966 331 156 ; Align 40200 383 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr28 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 329 -> 383 Target range: 51888 -> 52050 330 : GluSerValSerIleValArgAlaAlaTyrAsnCysGluTrpTyrAsnLeuSerAlaLys : 349 ::!||||||..!|||!.!!.!|||||||||:!!! !|||||||||||||||||| !!||| GlnSerValGluIleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLys 51889 : caGAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAA : 51946 350 : AspAlaMetLeuLeuValMetIleMetAsnArgAlaLysLysProLeuArgIleThrAla : 369 :!!|||! !||||||:!!!!:||||||...||||||!:! !||||||!:!||||||||| AsnAlaLysLeuLeuLeuIleIleMetArgArgAlaArgLeuProLeuGlnIleThrAla 51947 : AATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCA : 52006 370 : GlyLysPheCysAlaPheSerLeuSerLeuTyrAlaGlnIle : 383 |||!:!|||..!.!!|||!!!|||! !||||||:!!|||:!: GlyArgPheAlaThrPheThrLeuMetLeuTyrSerGlnVal 52007 : GGTAGATTTGCTACTTTCACTCTGATGCTGTATTCACAGGTa : 52050 vulgar: NvOr28 329 383 . KQ414804.1 51888 52050 + 171 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51889 52050 171 + . gene_id 3 ; sequence NvOr28 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 51889 52050 . + . KQ414804.1 exonerate:protein2genome:local exon 51889 52050 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51889 52050 171 + . alignment_id 3 ; Query NvOr28 ; Align 51889 330 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr28 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 100 -> 254 Target range: 36569 -> 37031 101 : LeuLeuSerPheValGluAlaAspTrpLysSerTyrLysThrAspSerAspMetThrAsn : 120 |||:!!||| :!! ! !|||||| !..! ! !!!!: !||| !!.. LeuMetSerGlnIlePheAspAspTrpAlaGluProIleProGluValAspArgHisThr 36570 : TTAATGAGCCAAATATTCGACGACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACG : 36627 121 : MetTrpSerAsnAlaGlnThrThrArgArgIleSerMetIleCysValIleLeuGlyAla : 140 ||| !!.!!.!|||:!!! !!:!|||! !||||||!!::!!||| !|||||| ! ! MetLeuLysThrAlaLysIleSerArgMetIleSerIleValCysSerIleLeuThrTyr 36628 : ATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTCTGTTCTATCCTGACGTAT : 36687 141 : GlyThrValAsnGlyHisLeuPheIleArgLeuGlyGlnGluAlaLysIleLeuProGly : 160 ! !! !||| !.! !|||! :!!!:!:!! !!...... !:!!! ! ! !!! ! ValMetValLeuAlaPheLeuSerLeuGlnIleTrpSerSerMetGlnAsnThrSerGlu 36688 : GTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGCAGCATGCAAAACACCTCGGAG : 36747 161 : LysAspGlyAlaThrArgLeuSerPheValAspSerTyrPheProTyrAspTyrSerPro : 180 :!!! !!.! !! !||| :!! :!! |||||||||||| !:! ! PheAsnValGlyGlyLeuLeu------IleProAlaThrPheProTyrAspThrAsnLys 36748 : TTCAACGTAGGAGGACTACTT------ATCCCGGCCACATTTCCATACGACACGAATAAA : 36801 181 : ThrProIleTyrGluIleThrTrpAlaIleGlnTyrIleGlyAlaAlaLeuAlaThrCys : 200 !:!|||! !||||||||||||||| ! !|||!:!:!:|||.!!!.!|||::!.!! SerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrValLeuSerAlaIle 36802 : AGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATA : 36861 201 : AlaTyrSerGlyIleTyrCysLeuPheValAlaLeuMetLeuHisLeuCysGlyGlnPhe : 220 ..!|||||| !!.!! !! !!! !!!.!!.!|||:!!||||||:!!|||||||||!!. CysTyrSerCysPheAspThrPheValAlaValLeuValLeuHisIleCysGlyGlnLeu 36862 : TGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTA : 36921 221 : SerAsnLeuArgLysLysLeuArgArgVal<-><->ValThrAsnGluAspAspLysArg : 238 !!! !||||||! |||..!!.!:!! ..!|||! :!!|||:!! ! !!! ThrValLeuArgIleAlaLeuGluAsnLeuAlaAsnThrThrIleLysAspAsnTyrSer 36922 : ACTGTTCTCCGCATTGCCCTCGAGAATCTTGCTAACACGACAATAAAAGACAACTACAGC : 36981 239 : LysPheValGluLysLeuAlaGluIleValLysArgHisGluAsnLeu : 254 |||||| !|||::!|||!.! ! |||||| ! |||!!..!..!.||| LysPheGlnGluArgLeuGlyTyrIleValHisArgGlnAsnGlnLeu 36982 : AAGTTCCAAGAACGATTAGGATACATTGTGCACAGGCAGAATCAATTG : 37031 vulgar: NvOr28 100 254 . KQ414804.1 36569 37031 + 158 M 67 201 G 2 0 M 61 183 G 0 6 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36570 37031 158 + . gene_id 4 ; sequence NvOr28 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36570 37031 . + . KQ414804.1 exonerate:protein2genome:local exon 36570 37031 . + . insertions 6 ; deletions 2 KQ414804.1 exonerate:protein2genome:local similarity 36570 37031 158 + . alignment_id 4 ; Query NvOr28 ; Align 36570 101 201 ; Align 36771 170 183 ; Align 36960 231 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr28 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 139 -> 257 Target range: 44793 -> 45138 140 : AlaGlyThrValAsnGlyHisLeuPheIleArgLeuGlyGlnGluAlaLysIleLeuPro : 159 ::!.!!|||||| !!|||:!! ! :!!! ! ! ! ! !::!.!!||| !! SerSerThrValLeuCysHisIleValValIleThrTyrIlePheLeuArgPheLeuThr 44794 : AGCAGCACAGTGTTATGTCACATTGTGGTCATCACTTATATATTTCTACGATTCCTCACC : 44851 160 : GlyLysAspGlyAlaThrArgLeuSerPheValAspSerTyrPheProTyrAspTyrSer : 179 !!||| !!.!!!.!||||||||| !||| !:!!||||||||||||||| !..! ArgLysTyrSerGlyThrArgLeuLeuPhe---ArgAlaTyrPheProTyrAspSerAsp 44852 : AGGAAGTACAGCGGCACCAGACTACTCTTC---CGTGCTTATTTCCCTTACGACAGCGAT : 44908 180 : ProThrProIleTyrGluIleThrTrpAlaIleGlnTyrIleGlyAlaAlaLeuAlaThr : 199 !!:!|||! !||||||.!!||| ! ! !||| !|||!.!||| !! !|||.!! ValSerProAsnTyrGluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAla 44909 : GTCAGTCCAAATTACGAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCC : 44968 200 : CysAlaTyrSerGlyIleTyrCysLeuPheValAlaLeuMetLeuHisLeuCysGlyGln : 219 !.!!|||!!!!.!:!! !! !!!!.!!||| !|||!!:||||||:!!||||||||| ThrThrTyrThrAlaValAspThrPheIleValMetLeuIleLeuHisValCysGlyGln 44969 : ACCACATACACAGCCGTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAA : 45028 220 : PheSerAsnLeuArgLysLysLeuArgArgValValThrAsnGluAspAspLysArgLys : 239 .!!||||||||||||!!.:!!!!! !!!:!:!! .!.! ! !|||||| !! ! LeuSerAsnLeuArgAsnGluPheGlyLysLeu------GlnAlaCysAspLysValThr 45029 : CTTTCGAATTTGAGAAACGAATTCGGTAAGCTT------CAAGCATGCGATAAAGTAACA : 45082 240 : PheValGluLysLeuAlaGluIleValLysArgHisGluAsnLeuAsnAsnPhe : 257 !!. !! !||||||!.!:!!||||||:!!!:!|||||| !!||||||!..||| LeuGlnAlaLysLeuGlyLysIleValGlnLysHisGluTyrLeuAsnArgPhe 45083 : TTACAGGCGAAGTTGGGGAAAATCGTGCAGAAACACGAATATCTTAACAGGTTC : 45138 vulgar: NvOr28 139 257 . KQ414804.1 44793 45138 + 155 M 30 90 G 1 0 M 60 180 G 2 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44794 45138 155 + . gene_id 5 ; sequence NvOr28 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44794 45138 . + . KQ414804.1 exonerate:protein2genome:local exon 44794 45138 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 44794 45138 155 + . alignment_id 5 ; Query NvOr28 ; Align 44794 140 90 ; Align 44884 171 180 ; Align 45064 233 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr28 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 329 -> 397 Target range: 34381 -> 34668 330 : GluSerValSerIleValArgAlaAlaTyrAsnCysGluTrpTyrAsnLeuSerAlaLys : 349 :!!||| !..!!!: !!.!:!!||||||.!.! .!.|||||||||:!!||| !! ! GlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProPro 34382 : CAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCA : 34439 350 : AspAlaMetLeuLeuValMetIleMetAsnArgAlaLysLysProLeuArgIleThrAla : 369 !!:|||! !! !|||:!!.!.||||||:!!|||.!! :::|||||| !!:!:|||||| GluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAla 34440 : GAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCA : 34499 370 : GlyLysPheCysAlaPheSerLeuSerLeuTyrAlaGln >>>> Target Intron : 383 ||||||||| !!.!!||||||:!!..!:!!!:!::! 83 bp GlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34500 : GGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt................... : 34543 384 : 1 >>>> IlePheLysThrSerGlyGlyTyrLeuSerMetLeuLeuAlaVal : 397 |||.!.||||||:!! !||||||||||||:!:||||||.!!||| ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeuThrVal 34544 : ......agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTCACAGTT : 34668 vulgar: NvOr28 329 397 . KQ414804.1 34381 34668 + 148 M 53 159 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34382 34668 148 + . gene_id 6 ; sequence NvOr28 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34382 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34382 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34668 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34668 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34382 34668 148 + . alignment_id 6 ; Query NvOr28 ; Align 34382 330 159 ; Align 34624 383 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 10 -> 294 Target range: 194171 -> 196405 11 : HisAlaPheGlyLeuCysArgIleAsnLeuThrValLeuGlyIleTrpProThrLeuA : 30 :!!||| !! !!:!!...!:! !|||||| !:!!|||||||||||| | TyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpPro------A 194172 : TACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCA------A : 194223 31 : rgSerSerLysArgAspGluThrAlaAlaLeuPheArgLeuValLeuSerLeuThrIl : 49 ||..!..!...! ! !!!:! !!.! !|||||| !! !..! ! !:!! ! rgGluAspSerLeuArgAspArgValArgLeuPheAlaGlnThrGlyValValPheAl 194224 : GGGAGGATTCTCTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTTCGC : 194280 50 : eIleIleLeuPheIleAsnThrValGlnThrIleLysLeuPheIleMetTrpGlyAsp : 68 !:!:!!:! !|||:!! ..! !!!...!||| ! !!:!.!! !! ! !||| aLeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCysGluAsp 194281 : TTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAGGAT : 194337 69 : LeuAspAlaMetThrAspIleIleSerThrAlaAsnLeuProIleGlyLeuMetValP : 88 ||| ! ! ! ! :!!|||:!!.!! ! !!! !:!: ||| !:!!. LeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeu---LeuAlaIleI 194338 : CTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTG---TTGGCGATCA : 194394 89 : heLysThrPheValPheLeuTyrHisLysGluAlaLeuValProLeuLeuSerPheVa : 107 !!||| !!::..!.!.:!! :!!!:!:!!! !:!! ! !! !||| ! :! leLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGluMe 194395 : TCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGAT : 194451 108 : lGlnThrAspTrpSerAsnPheLysThrValSerGluAlaAlaAsnMetTrpSerAsn : 126 !:!!|||.!.!::!!!:!! ! :!! !! !..!!!: ! ! ||| !!:! ! tGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsnCys 194452 : GGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGC : 194508 127 : AlaLeuAlaAlaArgLysIleSerLeuLeuCysValValIleGlyTrp<->ValThrV : 145 ||| ! !!.!||| .!!!!! !|||! !:!!! !:!!..!!:: ! !.!!: AlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaL 194509 : GCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTT : 194568 146 : alAsnCysHisLeuAlaIleArgIleGlyGlnGluLeuArgPheMetSerGlyLysAs : 164 !! ! !|||:!! !:!!! !:!: !..!||| !! ! !!! !..!! !!!.!: euProTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGluAspAsnSe 194569 : TGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAACAG : 194625 165 : nGlyLeuThrArgLeuProPhePheAspSerTyrPheProTyrAspTyrThrProSer : 183 ! !! !! !! !||||||!:!!!...!!:!||| !! !!:!! ! ! !||| rThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAspSer 194626 : TACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGACTCG : 194682 184 : ProValTyrGluIleThrPheValIleGlnTyrIleAlaThrMetLeuAlaThrPheG : 203 |||:!!|||||||||||||||||| ||| :!: !!:!! :!! ! !! ProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuSerT 194683 : CCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGTCGA : 194742 204 : lyTyrSerGlyLeuTyrSerLeuPheValAlaLeuMetLeuHisLeuCysGlyGlnPh : 222 ! !!!!!|||:!!||||||||| !!!.!.!!:!!!!::!!|||! !|||||| !|| hrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGlyLeuPh 194743 : CGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTTGTT : 194799 223 : eAlaAsnLeuArgAspArgLeuTyrThrValThrGlnLysLysAlaGlyValThrPhe : 241 |! ! !!!! |||:!! ! |||:!!:!! ! .!!||| ! !.!! eGluValThrSerArgArgMetGluThrIleSer---ValProThrGlyLysAspIle 194800 : CGAAGTGACCAGCAGAAGGATGGAGACTATTTCT---GTGCCCACTGGGAAGGATATT : 194853 242 : GlnGlnArgLeuGlyTyrIleValMetArgHisGlnCysLeuTyr{As} >>>> Ta : 257 !:! |||||| !! !!:!!|||..! !|||! ! ! !{!!} ArgGlyArgLeuArgAspValValGlnPheHisLeuLysAlaIle{Ly}++ 194854 : CGGGGTAGACTTAGGGACGTCGTTCAGTTTCATCTGAAAGCAATT{AA}gt....... : 194905 258 : rget Intron 1 >>>> {n}PheAlaGlnValValGluLysMetPheAsnLeuMe : 269 1391 bp {.}||||||:!!:!!:!!|||||| .!.|||:!!:! ++{s}PheAlaGluMetIleGluLysAlaLeuAsnIleVa 194906 : ..................ag{a}tTCGCTGAAATGATCGAGAAAGCACTGAACATCGT : 196328 270 : tPheLeuAlaGluIleLeuGlyCysThrIleGlnPheCysMetGlnGlyPhePheLeu : 288 !||||||:!!|||!!:||||||||||||||| .!.|||.!.! !! !!:! !:!! lPheLeuSerGluMetLeuGlyCysThrIleIleIleCysPheLeuGluTyrGlyVal 196329 : GTTTCTATCAGAGATGCTTGGCTGCACTATCATCATATGTTTCCTGGAATACGGTGTA : 196385 289 : LeuThrLeuSerSerLys : 294 :!!..!:!! !!.!!:! IleValValHisLysArg 196386 : ATCGTGGTACACAAGAGA : 196405 vulgar: NvOr29 10 294 . KQ414889.1 194171 196405 + 167 M 17 51 G 2 0 M 54 162 G 1 0 M 58 174 G 0 3 M 91 273 G 1 0 M 22 66 S 0 2 5 0 2 I 0 1387 3 0 2 S 1 1 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194172 196405 167 + . gene_id 1 ; sequence NvOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 194172 194902 . + . KQ414889.1 exonerate:protein2genome:local exon 194172 194902 . + . insertions 3 ; deletions 4 KQ414889.1 exonerate:protein2genome:local splice5 194903 194904 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 194903 196293 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 196292 196293 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 196294 196405 . + . KQ414889.1 exonerate:protein2genome:local exon 196294 196405 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194172 196405 167 + . alignment_id 1 ; Query NvOr29 ; Align 194172 11 51 ; Align 194223 30 162 ; Align 194385 85 174 ; Align 194562 143 273 ; Align 194835 235 66 ; Align 196295 258 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 178 -> 292 Target range: 286042 -> 286804 179 : AspTyrThrProSerProValTyrGluIleThrPheValIleGlnTyrIleAlaThrM : 198 ||| ! !!|||||| !!:!||||||..! !!!!:|||! !:!:|||.!!. AspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaP 286043 : GATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGT : 286100 199 : etLeuAlaThrPheGlyTyrSerGlyLeuTyrSerLeuPheValAlaLeuMetLeuHi : 217 !.:!! ! !! ! ! ! !||| !! !|||||| !!.!!.!!!!:!::!!|| heValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHi 286101 : TCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCA : 286157 218 : sLeuCysGlyGlnPheAlaAsnLeuArgAspArgLeuTyrThrValThrGlnLysLys : 236 |:!!|||||||||||| !! ||| ! !:!||| !!! !:!!..!.!. ! ! sValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyVal 286158 : CGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTG : 286214 237 : AlaGly{V} >>>> Target Intron 1 >>>> {al}ThrPheGlnGlnArgL : 245 !|||{:} 420 bp {!!}!.!.!! ! :!!!.! LysGly{I}+- ++{le}AsnIleTyrGluAsnA 286215 : AAAGGG{A}gg.........................ag{TA}AATATCTATGAGAACG : 286661 246 : euGlyTyrIleValMetArgHisGlnCysLeuTyrAsnPheAlaGlnValValGluLy : 264 !!.! ! ! ! !!:! !:! :!!!:!!:!||| !..! !:!!||| laAlaGly***GlnTrpLysIleArgThrIlePheSerPheIleSerGlnIleGluGl 286662 : CAGCTGGCTAACAGTGGAAAATACGAACGATTTTCAGTTTTATATCGCAAATCGAGGG : 286718 265 : sMetPheAsnLeuMetPheLeuAlaGluIleLeuGlyCysThrIleGlnPheCysMet : 283 !:!:.!.||| !!!:! !!!!!.!|||:!::!!|||||||||:!:.!..!.|||.!. yLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsnIleCysPhe 286719 : GCTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTT : 286775 284 : GlnGlyPhePheLeuLeuThrLeuSer : 292 !|||!:!!:!|||||||||:!!!!! LeuGlyTyrTyrLeuLeuThrValThr 286776 : TTGGGATATTATTTACTGACGGTAACA : 286804 vulgar: NvOr29 178 292 . KQ414889.1 286042 286804 + 110 M 60 180 S 0 1 5 0 2 I 0 416 3 0 2 S 1 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286043 286804 110 + . gene_id 2 ; sequence NvOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286043 286223 . + . KQ414889.1 exonerate:protein2genome:local exon 286043 286223 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286224 286225 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local intron 286224 286643 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286642 286643 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286644 286804 . + . KQ414889.1 exonerate:protein2genome:local exon 286644 286804 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286043 286804 110 + . alignment_id 2 ; Query NvOr29 ; Align 286043 179 180 ; Align 286646 240 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 178 -> 292 Target range: 279092 -> 280017 179 : AspTyrThrProSerProValTyrGluIleThrPheValIleGlnTyrIleAlaThrM : 198 ||| ! !!|||||| !!:!||||||..! !!!!:|||! !:!:|||.!!. AspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaP 279093 : GATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGT : 279150 199 : etLeuAlaThrPheGlyTyrSerGlyLeuTyrSerLeuPheValAlaLeuMetLeuHi : 217 !.:!! ! !! ! ! ! !||| !! !||||||.!!!.!!.!!!!:!::!!|| heValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHi 279151 : TCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCA : 279207 218 : sLeuCysGlyGlnPheAlaAsnLeu<-><-><->ArgAspArgLeuTyrThr<->Val : 232 |:!!|||||||||||| !! ||| ! !|||!:!||| ! ! ||| sValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyVal 279208 : CGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTG : 279264 233 : ThrGlnLysLysAlaGlyValThrPheGlnGlnArgLeuGlyTyrIleValMetArgH : 252 ! ! !!:!|||::! ! !||| !:!!|||||||||||| !!|||:!! !!.!| LysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisH 279265 : AAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATC : 279324 253 : isGlnCysLeuTyr{As} >>>> Target Intron 1 >>>> {n}PheAlaGl : 260 ||! ! :!! {..} 571 bp {!}||| !.. isLeuLysIleLeu{Gl}++ ++{y}PheIleSe 279325 : ATCTGAAGATACTG{GG}gt.........................ag{T}TTTATATC : 279919 261 : nValValGluLysMetPheAsnLeuMetPheLeuAlaGluIleLeuGlyCysThrIle : 279 ! !:!!||| !:!:.!.||| !!!:! !!!!!.!|||:!::!!|||||||||:!: rGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeu 279920 : GCAAATCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTG : 279976 280 : GlnPheCysMetGlnGlyPhePheLeuLeuThrLeuSer : 292 .!..!.|||.!. ! !!:!!:!|||||||||:!!!!! AsnIleCysPheLeuThrTyrTyrLeuLeuThrValThr 279977 : AACATATGCTTTTTGACATATTATTTACTCACGGTAACA : 280017 vulgar: NvOr29 178 292 . KQ414889.1 279092 280017 + 104 M 47 141 G 0 9 M 6 18 G 0 3 M 25 75 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 279093 280017 104 + . gene_id 3 ; sequence NvOr29 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 279093 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 279093 279340 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280017 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280017 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 279093 280017 104 + . alignment_id 3 ; Query NvOr29 ; Align 279093 179 141 ; Align 279243 226 18 ; Align 279264 232 75 ; Align 279913 258 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr29 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 1 -> 235 Target range: 289708 -> 290410 2 : AspAspLysLysGlyThrSerPheIleHisAlaPheGlyLeuCysArgIleAsnLeuT : 21 :!!|||::: ! ! !|||..!.!. !:!!.!!|||! !||||||!.! ! !|||! AsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleLeuL 289709 : AACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCTTGA : 289766 22 : hrValLeuGlyIleTrpProThrLeuArgSer<->SerLysArgAspGluThrAlaAl : 39 ! !:!!|||!!:!::||| !:!! !||| :!!!..||| !||| !.!!|| ysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgThrAl 289767 : AACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGC : 289823 40 : aLeuPheArgLeuValLeuSerLeuThrIleIleIleLeuPheIleAsnThrValGln : 58 |! ! ! !|||:!!||| !! ! ! |||:!!! !|||||| :!! ! aSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIle------IleVal 289824 : GTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATC------ATAGTA : 289874 59 : ThrIleLysLeuPheIleMetTrpGlyAspLeuAspAlaMetThrAspIleIleSerT : 78 !!.!!!..! ! !:!!:!:!::.!!||| !||| !! ||| !:!!! !:! ProPheSerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnL 289875 : CCGTTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATC : 289934 79 : hrAlaAsnLeuProIleGlyLeuMetValPheLysThrPheValPheLeuTyrHisLy : 97 !!.! ||| !!.!! !!|||! ..!||| ! !!:! !!:!!!! ! || euGlyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLy 289935 : TCGGACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAA : 289991 98 : s<->GluAlaLeuValProLeuLeuSerPheValGlnThrAspTrpSerAsnPheLys : 115 | ..!|||:!!! !! !! !:!!!.! !:!!:!!! !||||||!.!! !!.::: sGlySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArg 289992 : AGGTTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGT : 290048 116 : ThrValSerGluAlaAlaAsnMetTrpSerAsnAlaLeuAlaAlaArgLysIleSerL : 135 !! !..!.!. !!.!! !||| !!! !!!.! ! !::!|||!!.:!!! ! AspGluAspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleL 290049 : GACGAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAA : 290108 136 : euLeuCysValValIleGlyTrpValThrValAsnCysHisLeuAlaIleArgIleGl : 154 !||||||!.!:!!.!! !!:::!! !! ! ! !:!! !.!!:!!! ! ysLeuCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLe 290109 : AACTGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTT : 290165 155 : yGlnGluLeuArgPheMetSerGlyLysAsnGlyLeuThrArgLeuProPhePheAsp : 173 ! ..! !!:! !:!!!:!|||!!. !:!!! !! !||| !!!:! !! ! uPheSerLysLysSerValAsnGlyAsnValThrIleArgProLeuThrTyrProGly 290166 : GTTCTCGAAGAAGAGCGTGAACGGTAACGTGACTATCAGACCTCTAACTTATCCCGGT : 290222 174 : SerTyrPheProTyrAspTyrThrProSerProValTyrGluIleThrPheValIleG : 193 ! ! ! !!:!||| ! ! !||||||!.!|||||||||..!||| !!!:! TyrGluGluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetH 290223 : TACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGC : 290282 194 : lnTyrIleAlaThrMetLeuAlaThrPheGlyTyrSerGlyLeuTyrSerLeuPheVa : 212 !.! !:!! !..!|||:!!.!!.!! ! ! ! !!.! !||||||||| .. isCysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrTh 290283 : ACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGAC : 290339 213 : lAlaLeuMetLeuHisLeuCysGlyGlnPheAlaAsnLeuArgAspArgLeuTyrThr : 231 ! !!!! !||| !|||||||||.!! !! ! !! ! |||||| ! ! rIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAsp 290340 : GATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGAT : 290396 232 : ValThrGlnLys : 235 :!!|||:!!!:! LeuThrLysArg 290397 : CTGACAAAGAGA : 290410 vulgar: NvOr29 1 235 . KQ414889.1 289708 290410 + 103 M 30 90 G 0 3 M 23 69 G 2 0 M 41 123 G 0 3 M 138 414 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289709 290410 103 + . gene_id 4 ; sequence NvOr29 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289709 290410 . + . KQ414889.1 exonerate:protein2genome:local exon 289709 290410 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289709 290410 103 + . alignment_id 4 ; Query NvOr29 ; Align 289709 2 90 ; Align 289802 32 69 ; Align 289871 57 123 ; Align 289997 98 414 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr32NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 321 -> 380 Target range: 244655 -> 244832 322 : LysSerIleGluIleAlaAspAlaAlaTyrAsnCysLysTrpTyrAsnPheGlnLysL : 341 :!!!!!:!::!!:!!!.!!!:!.!!.!|||! ! |||||| !!.!.! !:!!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 342 : ysGluValSerAspLeuIleLeuIleMetLysArgAlaGlnTyrProLeuAspIleTh : 360 :!..!:!! !|||||||||||||||!!:||||||:!!.!. !:!!!!:||||| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 361 : rAlaGlyLysPheCysSerLeuSerLeuArgLeuPheAlaIleIleGlyLysThrSer : 379 |||||||||| ! ! !:!!|||||| ! !|||!.! !:!!.!!:!!|||!.! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrLys 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAA : 244827 380 : Leu : 380 ||| Leu 244828 : CTT : 244832 vulgar: NvOr32NTE 321 380 . KQ414889.1 244655 244832 + 108 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244832 108 + . gene_id 1 ; sequence NvOr32NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244832 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244832 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244832 108 + . alignment_id 1 ; Query NvOr32NTE ; Align 244656 322 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr32NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 321 -> 380 Target range: 238625 -> 238802 322 : LysSerIleGluIleAlaAspAlaAlaTyrAsnCysLysTrpTyrAsnPheGlnLysL : 341 :!!!!!:!::!!:!!!.!!!:!.!!.!|||! ! |||||| !!.!.! !:!!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 342 : ysGluValSerAspLeuIleLeuIleMetLysArgAlaGlnTyrProLeuAspIleTh : 360 :!..!:!! !|||||||||||||||!!:||||||:!!.!. !:!! ! :!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 361 : rAlaGlyLysPheCysSerLeuSerLeuArgLeuPheAlaIleIleGlyLysThrSer : 379 |||||||||| ! ! !:!!|||||| ! !|||!.! !:!!.!!:!!|||!:! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 380 : Leu : 380 ||| Leu 238798 : CTT : 238802 vulgar: NvOr32NTE 321 380 . KQ414889.1 238625 238802 + 105 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238802 105 + . gene_id 2 ; sequence NvOr32NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238802 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238802 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238802 105 + . alignment_id 2 ; Query NvOr32NTE ; Align 238626 322 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr32NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 321 -> 380 Target range: 254271 -> 254448 322 : LysSerIleGluIleAlaAspAlaAlaTyrAsnCysLysTrpTyrAsnPheGlnLysL : 341 :!!!!!:!::!!:!!!.!!!:!.!!.!|||! ! |||||| !!.!.! !:!!! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 342 : ysGluValSerAspLeuIleLeuIleMetLysArgAlaGlnTyrProLeuAspIleTh : 360 :!..!:!! !|||||||||||||||!!:! !|||:!!.!. !:!!!!:||||| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 361 : rAlaGlyLysPheCysSerLeuSerLeuArgLeuPheAlaIleIleGlyLysThrSer : 379 ||||||||||... :::|||||| ! !|||!.! !:!!.!!:!!|||!:! rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 254443 380 : Leu : 380 ||| Leu 254444 : CTT : 254448 vulgar: NvOr32NTE 321 380 . KQ414889.1 254271 254448 + 103 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254448 103 + . gene_id 3 ; sequence NvOr32NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254448 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254448 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254448 103 + . alignment_id 3 ; Query NvOr32NTE ; Align 254272 322 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr32NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 3 -> 135 Target range: 284523 -> 285931 4 : PheAlaValAsnLeuSerArgLeuCysLeuCysPheValGlyValTrpProAsnLeuG : 23 !:!::!|||.!.:!!!:!|||! !! !||| :!!|||||||||||| ! !! TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 24 : lnCysSerArgPhePheGluIleValSerAsnAlaValPheSerValSerSerIleLe : 42 ||| !! ! !!!.|||! :!!|||::!!.!|||.!!:!!:!!! !||| !!! euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 43 : uIleIleTyrPheIleValIlePro<->GlnThrThrLysLeuPheTyrSerAspArg : 60 !:!:||| !|||:!!:!!:!!||| ! !! !:!!.!! !!!.! ! !! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 61 : AspLeuAspIleIleValAspIleLeuCysThrAlaAspIleProIleIleValAlaL : 80 |||||||||! ! :!! ! !!::!! !! !! !..!.!! !!!::!!||| AspLeuAspThrLysIleLysMetIleGlyProLeuSerPhe---CysMetMetAlaA 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTC---TGCATGATGGCAG : 284752 81 : euIleLysMetPheValLeuArgTyrAspSerAsnValMetArgTyrLeuLeuAspGl : 99 !|||||| !:!:!!|||! !! !.!!..! !!!: !! ! ! !:!! ! .! laIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAs 284753 : CGATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGA : 284809 100 : nLeuPheLysAsp{Tr} >>>> Target Intron 1 >>>> {p}LysSerPro : 107 .:!! ! !|||{||} 1012 bp {|} |||! ! pIleArgAlaAsp{Tr}++ +-{p}LeuSerHis 284810 : CATTCGTGCGGAC{TG}gt.........................ac{G}CTTTCGCAT : 285845 108 : GlnThrGluSerArgArgAlaThrMetArgAspSerAlaLysSerGlyArgMetIleA : 127 ... |||......||| |||||||||||||||!:!! !|||||| :!:| SerGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuA 285846 : AGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGG : 285905 128 : laAlaAlaCysMetGlyIleAlaTyr : 135 || ! !||| |||.!! !||| laIlePheCysAlaGlyPheMetTyr 285906 : CGATCTTCTGCGCCGGTTTCATGTAT : 285931 vulgar: NvOr32NTE 3 135 . KQ414889.1 284523 285931 + 101 M 47 141 G 0 3 M 24 72 G 1 0 M 28 84 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 285931 101 + . gene_id 4 ; sequence NvOr32NTE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284524 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 284825 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 285931 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 285931 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284524 285931 101 + . alignment_id 4 ; Query NvOr32NTE ; Align 284524 4 141 ; Align 284668 51 72 ; Align 284740 76 84 ; Align 285839 105 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 332 -> 383 Target range: 292389 -> 292542 333 : GluSerLeuGlnLeuGlyAsnAlaIlePheTyrSerLysTrpTyrAsnLeuProAlaA : 352 :!!.!! !:!!:!!!.!:!!||| !!:! !!!!!:!!||||||||||||||| !. GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 353 : snLysAlaArgLeuLeuIleIleAlaIleLeuArgValGlnLysProLeuGluLeuSe : 371 ..||||||||| !:!!:!!:!:!.!:!! !! !..!:!! ! |||:!!:!!|||!! rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 372 : rAlaGlyLysPheCysIlePheSerLeuAsnLeuPhe : 383 !|||||||||.!.! !:!!.!!||||||||| !||| rAlaGlyLysIlePheValLeuSerLeuAsnThrPhe 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTT : 292542 vulgar: NvOr20 332 383 . KQ414889.1 292389 292542 + 108 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 292542 108 + . gene_id 1 ; sequence NvOr20 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292390 292542 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292542 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 292542 108 + . alignment_id 1 ; Query NvOr20 ; Align 292390 333 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr20 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 328 -> 386 Target range: 301862 -> 302036 329 : IleLeuArgGluGluSerLeuGlnLeuGlyAsnAlaIlePheTyrSerLysTrpTyrA : 348 ||| !|||!!: !!!!! !|||:!!|||:::||| !:! ! ! ! ! ||||||| IleGlyArgAsp***CysSerGlnIleGlySerAlaSerTyrGluIleAspTrpTyrA 301863 : ATTGGTCGTGATTAGTGTAGCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACA : 301920 349 : snLeuProAlaAsnLysAlaArgLeuLeuIleIleAlaIleLeuArgValGlnLysPr : 367 |||||||||||!!.!:!||| ! !||||||:!! !! !:!!! ! !||| ! || snLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerValIleSerGlnTyrPr 301921 : ATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCC : 301977 368 : oLeuGluLeuSerAlaGlyLysPheCysIlePheSerLeuAsnLeuPheCysAsnIle : 386 |! !:!!|||!!!|||||||||.!. ! !!!.||||||||| !||| !!::!:!! oProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301978 : GCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302034 vulgar: NvOr20 328 386 . KQ414889.1 301862 302036 + 102 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301863 302036 102 + . gene_id 2 ; sequence NvOr20 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301863 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301863 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301863 302036 102 + . alignment_id 2 ; Query NvOr20 ; Align 301863 329 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr19 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 210 Query range: 179 -> 386 Target range: 300234 -> 302036 180 : PheAspProGlnSerTyrProAsnTyrGlnIleThrTrpThrLeuGlnIleIleAlaT : 199 .!!||| !!|||!!! !|||!.!|||:!:|||...::: ...... .!!|||. IleAspThrGlnThrSerProThrTyrGluIleValPhePhePheHisCysPheAlaA 300235 : ATCGATACACAAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAG : 300292 200 : hrPheLeuAlaAlaGlyAlaPheSerSerValAspAlaLeuPheValThrLeuValLe : 218 !!.!.:!! ! !..!!.! !!!:!!!.! !!::!||| !.!! !!!!||| laMetIleMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValTh 300293 : CGATGATCATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCAC : 300349 219 : uHisLeuCysGlyGlnLeuThrAsnLeuGlnAlaAlaPheSerGluIleGlyGluGlu : 237 !|||:!!|||||||||:!! !! ! !..!||| !!!...!!!::!:! !|||..! rHisIleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArg 300350 : TCATATCTGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGG : 300406 238 : AsnAlaGluLysGlyThrMetPheValSerLysLeuSerLysLeuIleGluArgHisA : 257 !..!.!||||||! ! ! ! !..! ||| ! :!!:!!..! !||| ThrGlyGluLysAspAsp---GlyProAspProLeuValValIleValArgAspHisV 300407 : ACGGGAGAGAAGGACGAC---GGTCCTGATCCTTTGGTCGTTATCGTTCGAGATCACG : 300463 258 : rgLysIleAsn{Va} >>>> Target Intron 1 >>>> {l}PheAlaAspIl : 265 !|||:!! { } 140 bp {!}|||||| ! ! alLysValLeu{Ar}++ ++{g}PheAlaLysAs 300464 : TGAAGGTTTTA{AG}gt.........................ag{A}TTTGCAAAGAA : 300627 266 : eIleGluTyrSerPheAsnMetMetPheLeuValGlnValLeuSerSerThrLeuLeu : 284 !:!!||| ! !!!!!...! .!.! !||||||:!!:!!!!!..!|||||||||:!! nValGluGluThrLeuArgAspPheCysLeuValGluIlePheGluSerThrLeuIle 300628 : CGTTGAGGAAACTTTGCGTGACTTCTGCTTAGTGGAAATCTTCGAGTCCACGCTGATT : 300684 285 : LeuCysLeuGlnGlyTyrLeuPheMetIleIleLeu >>>> Target Intron 2 : 297 |||||||||! ! !|||! !! !:!!:!::!! ! 964 bp LeuCysLeuLeuGluTyrTyrCysLeuValValLys-- 300685 : TTGTGTTTGCTCGAATACTACTGTTTGGTGGTAAAAag.................... : 300725 298 : >>>> SerGlyGlnAspGlyLeuLeuValGluMetIlePheIleSerTyrPheThr : 313 ..! !!|||:!!.!! ! !:!!! |||:!: .!!! ! !.!. ! ++GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeu 300726 : .....agGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTA : 301735 314 : IleCysPheThrPheSerIlePheValTyrCysTyrValAlaGluLeuLeuGlnGluL : 333 ! ! |||||||||!:!||||||:!!!:!||||||:!!!.!|||:!!|||...|||: ThrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluG 301736 : ACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAAC : 301795 334 : ys >>>> Target Intron 3 >>>> SerLeuGlnLeuGlyTyrAlaIlePhe : 342 !! 80 bp !!! !|||:!!|||! ||| !:! ln++ ++CysSerGlnIleGlySerAlaSerTyr 301796 : AGgt.........................agTGTAGCCAAATTGGTTCAGCATCGTAC : 301902 343 : TyrSerLysTrpTyrAsnLeuProAlaLysLysAlaArgLeuLeuIleIleSerIleV : 362 ! ! ! ! |||||||||||||||||||||!:!||| ! !||||||:!! !! !| GluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeuSerV 301903 : GAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTTAGCG : 301962 363 : alArgCysLysArgProLeuGluIleSerAlaGlyLysPheCysIlePheSerLeuAs : 381 ||! !! :!! !|||! !:!!:!!!!!|||||||||.!. ! !!!.|||||||| alIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerLeuAs 301963 : TGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCTTGAA : 302019 382 : nLeuPheCysAsnIle : 386 | !||| !!::!:!! nThrPheSerSerVal 302020 : TACATTCAGCTCTGTA : 302036 vulgar: NvOr19 179 386 . KQ414889.1 300234 302036 + 210 M 64 192 G 1 0 M 16 48 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 35 105 5 0 2 I 0 960 3 0 2 M 37 111 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300235 302036 210 + . gene_id 1 ; sequence NvOr19 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300235 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300235 300476 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 300616 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300615 300616 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300617 300722 . + . KQ414889.1 exonerate:protein2genome:local exon 300617 300722 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300723 300724 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local intron 300723 301686 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301685 301686 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301687 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300235 302036 210 + . alignment_id 1 ; Query NvOr19 ; Align 300235 180 192 ; Align 300427 245 48 ; Align 300618 262 105 ; Align 301687 297 111 ; Align 301878 334 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr19 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 194 Query range: 261 -> 383 Target range: 291137 -> 292542 262 : PheAlaAspIleIleGluTyrSerPheAsnMetMetPheLeuValGlnValLeuSerS : 281 |||.!! !!:|||||| !:!!!!.:!! !!:||||||:!!:!!|||:!! !| PheThrArgMetIleGluSerAlaLeuHisGluIlePheLeuIleGluValIleValS 291138 : TTCACGAGGATGATCGAAAGCGCGTTGCATGAAATATTCTTGATAGAAGTAATAGTAT : 291195 282 : erThrLeuLeuLeuCysLeuGlnGlyTyrLeuPheMetIle >>>> Target Int : 295 |||||:!!|||||||||||| ! !||||||!!.|||!!: 132 b erThrValLeuLeuCysLeuIleGluTyrLeuLeuMetMet++ 291196 : CCACTGTGTTACTATGCTTGATCGAATATCTCTTAATGATGgt............... : 291239 296 : ron 1 >>>> IleLeuSerGlyGlnAspGlyLeuLeuValGluMetIlePheIleS : 310 p !! !..!.!!...|||..!:!! !:!! :!:! !!:!:!!! ++GluTrpGluSerSerAspSerIleGlyIle---LeuThrTyrValT 291240 : ..........agGAATGGGAGAGTAGCGATTCGATCGGGATA---TTAACATACGTCA : 291411 311 : erTyrPheThrIleCysPheThrPheSerIlePheValTyrCysTyrValAlaGluLe : 329 !! !.!!||| ! !|||||||||!:!|||.!.:!!!:!|||||||||!.!||||| hrLeuLeuThr---SerPheThrPheAsnIleLeuIlePheCysTyrValGlyGluLe 291412 : CTCTCCTCACT---TCTTTCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACT : 291465 330 : uLeuGlnGluLys >>>> Target Intron 2 >>>> SerLeuGlnLeuGlyT : 339 ||||! ! !:!! 913 bp .!! !:!!:!!!.!: uLeuLeuGlyGln++ ++GlySerGluIleAlaH 291466 : TCTTCTTGGACAGgt.........................agGGTAGTGAAATCGCGC : 292408 340 : yrAlaIlePheTyrSerLysTrpTyrAsnLeuProAlaLysLysAlaArgLeuLeuIl : 358 !!||| !!:! !!!!!:!!||||||||||||||| !::!||||||||| !:!!:! isAlaSerTyrAspThrGluTrpTyrAsnLeuProArgArgLysAlaArgAspIleVa 292409 : ACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGGCTCGTGACATCGT : 292465 359 : eIleSerIleValArgCysLysArgProLeuGluIleSerAlaGlyLysPheCysIle : 377 !:!: !:!!!.!! ! |||!.!|||:!!:!!:!!!!!|||||||||.!.! !:!! lLeuValLeuAlaIleThrLysHisProIleLysLeuThrAlaGlyLysIlePheVal 292466 : TCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTT : 292522 378 : PheSerLeuAsnLeuPhe : 383 .!!||||||||| !||| LeuSerLeuAsnThrPhe 292523 : CTCTCGTTGAACACTTTT : 292542 vulgar: NvOr19 261 383 . KQ414889.1 291137 292542 + 194 M 33 99 5 0 2 I 0 128 3 0 2 M 10 30 G 1 0 M 8 24 G 1 0 M 19 57 5 0 2 I 0 909 3 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291138 292542 194 + . gene_id 2 ; sequence NvOr19 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 291138 291236 . + . KQ414889.1 exonerate:protein2genome:local exon 291138 291236 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291237 291238 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291237 291368 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 291367 291368 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 291369 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291479 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 291480 291481 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291480 292392 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 292391 292392 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 292393 292542 . + . KQ414889.1 exonerate:protein2genome:local exon 292393 292542 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291138 292542 194 + . alignment_id 2 ; Query NvOr19 ; Align 291138 262 99 ; Align 291369 295 30 ; Align 291399 306 24 ; Align 291423 315 57 ; Align 292393 334 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr19 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 303 -> 405 Target range: 305121 -> 305840 304 : ValGluMetIlePheIleSerTyrPheThrIleCysPheThrPheSerIlePheValT : 323 |||...:!:! ! !!!! !!. !|||! ! ! ||||||!:!||||||:!!! ValSerLeuThrThrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleL 305122 : GTTAGTCTTACAACATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATAT : 305179 324 : yrCysTyrValAlaGluLeuLeuGlnGluLysSer{Le} >>>> Target Intro : 335 ||||||:!!!.!|||:!!|||..!|||||| !{ } 413 bp euCysTyrIleGlyGluIleLeuMetGluLysVal{Se}-+ 305180 : TATGCTACATTGGTGAGATTCTTATGGAAAAGGTG{ag}tt................. : 305219 336 : n 1 >>>> {u}GlnLeuGlyTyrAlaIlePheTyrSerLysTrpTyrAsnLeuPro : 350 {!}...:!!|||! :!! !||| ! !!..||||||:!!|||||| ++{r}SerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuPro 305220 : ........ag{T}AGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCG : 305673 351 : AlaLysLysAlaArgLeuLeuIleIleSerIleValArgCysLysArgProLeuGluI : 370 .!!|||! ! !!.! !||||||:!!! !|||!.!! !! !..!.!||| !:!!| ThrLysThrIleHisGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysI 305674 : ACTAAGACGATACATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAA : 305733 371 : leSerAlaGlyLysPheCysIlePheSerLeuAsnLeuPheCysAsnIleValArgTh : 389 |||||||||||||| ! ! !!!.||||||::! !||| ! |||:!: ! ! leSerAlaGlyLysValValAspLeuSerLeuSerThrPheGlyAsnValSerTyrTy 305734 : TCAGTGCTGGTAAAGTAGTTGATTTATCTTTATCCACATTTGGAAACGTGAGTTACTA : 305790 390 : rSerAlaGlyTyrMetSerValLeuLeuAlaValLysAspLysIleThr : 405 !... ... :::|||::::::::: ||||||||| rGlnTyrSerAsnIleSerIleValIleLeuLys***LeuLysIleThr 305791 : Tcaatattccaatatttcaattgttatattgaaataacttaaaattaca : 305840 vulgar: NvOr19 303 405 . KQ414889.1 305121 305840 + 116 M 31 93 S 0 2 5 0 2 I 0 409 3 0 2 S 1 1 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305122 305840 116 + . gene_id 3 ; sequence NvOr19 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305122 305216 . + . KQ414889.1 exonerate:protein2genome:local exon 305122 305216 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305217 305218 . + . intron_id 1 ; splice_site "tt" KQ414889.1 exonerate:protein2genome:local intron 305217 305629 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305628 305629 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305630 305840 . + . KQ414889.1 exonerate:protein2genome:local exon 305630 305840 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305122 305840 116 + . alignment_id 3 ; Query NvOr19 ; Align 305122 304 93 ; Align 305631 336 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr19 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 290 -> 386 Target range: 234785 -> 235147 291 : LeuPheMetIleIleLeuSerGlyGlnAspGlyLeuLeuValGluMetIlePheIleS : 310 |||! !! !||||||!!!..!|||!!: :::::: !! ! LeuCysLysCysIleLeuThrSerGlnGluLysSerLysGluLysLeuAlaSerTyrV 234786 : TTATGCAAATGTATTTTAACTTCTCAGGAAAAgtcgaaggaaaaattagCTTCATACG : 234843 311 : erTyrPheThrIleCysPheThrPheSerIlePheValTyrCysTyrValAlaGluLe : 329 ! ! ! !:!:! !.!.||||||:::||||||::::::||||||:!!!.!||| alIleValTyrValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluTh 234844 : TCATCGTGTACGTGTCCATGACATTtaatatattcatattttgttACATCGGAGAGAC : 234900 330 : uLeuGlnGluLysSerLeuGln{L} >>>> Target Intron 1 >>>> {eu} : 337 !||| !|||:!! ! !..!{!} 74 bp {!!} rLeuThrGluGlnValGlySer{P}+- ++{he} 234901 : GCTTACAGAGCAGGTAGGATCA{T}ga.........................ag{TC} : 234999 338 : GlyTyrAlaIlePheTyrSerLysTrpTyrAsnLeuProAlaLysLysAlaArgLeuL : 357 ||| ! !:!:!:! !!!:!!||||||...|||||| !|||! |||! ! !| GlyGluLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyL 235000 : GGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTT : 235058 358 : euIleIleSerIleValArgCysLysArgProLeuGluIleSerAlaGlyLysPheCy : 376 ||:!!!!:! !||| !|||! !..! ! !:!!:!!|||!!!|||||||||||| euValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheLe 235059 : TGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCT : 235115 377 : sIlePheSerLeuAsnLeuPheCysAsnIle : 386 !.!.|||:!! !||| !!:!!:!: uGlnMetSerValAlaThrPheGlyAspVal 235116 : ACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: NvOr19 290 386 . KQ414889.1 234785 235147 + 106 M 46 138 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234786 235147 106 + . gene_id 4 ; sequence NvOr19 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234786 234924 . + . KQ414889.1 exonerate:protein2genome:local exon 234786 234924 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234925 234926 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 234925 234998 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234997 234998 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234999 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234999 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234786 235147 106 + . alignment_id 4 ; Query NvOr19 ; Align 234786 291 138 ; Align 235001 338 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr30PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 93 -> 242 Target range: 194384 -> 194834 94 : LeuValValPheLysThrPheValPheIleTyrHisLysLysAlaLeuLeuProLeuL : 113 |||!.!:!!.!!||| !!::..!.!.||| :!!!:!|||! !:!! ! !! !| LeuAlaIleIleLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysL 194385 : TTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTC : 194442 114 : euLeuCysAlaGlnSerAspTrpAspSerProLysSerAlaSerGluAspMetAsnMe : 132 ||||| !:!!!!!.!.!:: ..! !:!!!!!! !..!!!: ..! || euLeuGluMetGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMe 194443 : TGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGAT : 194499 133 : tTrpSerAsnThrArgIleAlaArgArgLeuSerLeuIleCysLeuThrIleGlyIle : 151 | !!:! !.!!!:!|||!.!||| !!!!!!! !:!:! !||| !:!!..! ! tThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyr 194500 : GACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTAC : 194556 152 : SerThrValAsnCysHisLeuValValArgValCysGlnGluIleLysPheIleProG : 171 .!! !!.! :!!! !:!!:!!! ! ! ..!..! !:!.!!:!! !! GlyGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluArgIleValLysG 194557 : GGTGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGG : 194616 172 : lyLysThrThrSerLysLeuGluLeu<->PhePheAsnSerTyrPheSerPheAspTy : 189 ! ! !.!!:!!!!:!!:!! ||| !:!!!.!:!!:!||| !!! !|||! luAspAsnSerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIl 194617 : AGGATAACAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGAT : 194673 190 : rThrHisSerProIleTyrGluLeuThrValThrIleGlnTyrValAlaThrIleLeu : 208 ! ! !!|||||||||||||||:!!||| !!..! ||| :!! !!:!! !:!! eGluAspSerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIle 194674 : CGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATC : 194730 209 : IleThrIleGlyTyrSerGlyLeuTyrGlyLeuPheValAlaLeuMetLeuHisPheC : 228 ||| ! ! !!!!!|||:!!|||.!!||| !!!.!.!!:!!!!::!!|||! !| IleLeuSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysC 194731 : ATATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCT : 194790 229 : ysGlyGlnPheAlaAsnLeuArgAlaLysLeuAspArgIleAla : 242 ||||| !|||! ! !!!! !!:!:!!!!:! !|||:!! ysGlyLeuPheGluValThrSerArgArgMetGluThrIleSer 194791 : GTGGCTTGTTCGAAGTGACCAGCAGAAGGATGGAGACTATTTCT : 194834 vulgar: NvOr30PSE 93 242 . KQ414889.1 194384 194834 + 101 M 86 258 G 0 3 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194385 194834 101 + . gene_id 1 ; sequence NvOr30PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194385 194834 . + . KQ414889.1 exonerate:protein2genome:local exon 194385 194834 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194385 194834 101 + . alignment_id 1 ; Query NvOr30PSE ; Align 194385 94 258 ; Align 194646 180 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr25 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 338 -> 395 Target range: 280297 -> 280539 339 : AlaTyrAsnTyrGluTrpTyrArgLeuProAlaArgAspAlaArgLeuLeuLeuPheI : 358 .!!|||! !!!:|||||||||||||||!.!!:! ! |||!:! !|||:!!.!.| ThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuI 280298 : ACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGA : 280355 359 : leMetLeuArgAlaGluArgProLeuGluValThrAlaGlyLysPheCysAlaPheSe : 377 ||.!. ! !:!!.!. ! !!:!!:!!:!!||||||||||||.!! !! !.!!|| lePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSe 280356 : TATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTC : 280412 378 : rLeuArgLeuTyrAlaGln >>>> Target Intron 1 >>>> IleLeuLysT : 387 ||||!!! !!:!..!... 71 bp :!:||||||| rLeuSerSerPheCysSer++ ++ValLeuLysT 280413 : TTTAAGCAGCTTCTGCAGCgt.........................agGTGTTAAAAA : 280513 388 : hrSerGlyGlyTyrLeuSerMetLeu : 395 ||:!! !!.!|||||||||:!:||| hrAlaPheAlaTyrLeuSerLeuLeu 280514 : CGGCATTCGCATATCTGAGCTTATTA : 280539 vulgar: NvOr25 338 395 . KQ414889.1 280297 280539 + 103 M 45 135 5 0 2 I 0 67 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280298 280539 103 + . gene_id 1 ; sequence NvOr25 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280298 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280298 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280539 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280539 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280298 280539 103 + . alignment_id 1 ; Query NvOr25 ; Align 280298 339 135 ; Align 280504 384 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr17 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 335 -> 392 Target range: 292389 -> 292560 336 : GluSerMetGluValGlyAsnAlaAlaTyrGluSerAsnTrpTyrAspLeuProSerC : 355 :!!.!!! |||:!!!.!:!!|||:!!|||!!:!!!.!.||||||:!!||||||!!! GlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgA 292390 : CAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGAC : 292447 356 : ysGluThrLysLeuLeuMetLeuValIleIleArgAlaLysLysProPheLysIleTh : 374 ! :!!.!!::: !:!!:!:||||||:!! !! !.!!||| ! |||.!!|||:!!|| rgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuTh 292448 : GGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTAC : 292504 375 : rAlaGlyLysPheAlaAlaPheSerLeuGlyLeuTyrCysSerIleLeuArgSer : 392 ||||||||||.!. !!.!.!!||||||..! !!:! !!:!!:!!! !..!||| rAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSer 292505 : AGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCA : 292560 vulgar: NvOr17 335 392 . KQ414889.1 292389 292560 + 108 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292390 292560 108 + . gene_id 1 ; sequence NvOr17 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292390 292560 . + . KQ414889.1 exonerate:protein2genome:local exon 292390 292560 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292390 292560 108 + . alignment_id 1 ; Query NvOr17 ; Align 292390 336 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr17 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 318 -> 389 Target range: 301823 -> 302036 319 : PheThrPheSerLeuPheValTyrCysTyrValAlaGluValLeuArgThrGluSerM : 338 ||| |||::::!!||| ! ! !! !::! :!! !||| ! !!!!!! PheLeuPheAsnValPheProArgTyrLeuSerSerPheIleGlyArgAsp***CysS 301824 : tttcttttcaatGTATTTCCACGGTATTTAAGCAGCTTTATTGGTCGTGATTAGTGTA : 301881 339 : etGluValGlyAsnAlaAlaTyrGluSerAsnTrpTyrAspLeuProSerCysGluTh : 357 :!!:!!|||:::|||:!!||||||! !:!!||||||:!!||||||:!! ..!.! erGlnIleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAl 301882 : GCCAAATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGC : 301938 358 : rLysLeuLeuMetLeuValIleIleArgAlaLysLysProPheLysIleThrAlaGly : 376 ! ! !|||!!:|||:!!! !:!:! !:!!:!! ! ||| |||:!!||||||||| aTyrAspLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGly 301939 : ATACGATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGG : 301995 377 : LysPheAlaAlaPheSerLeuGlyLeuTyrCysSerIle : 389 |||.!. !! !!!.||||||..! !!:! !!|||:!! LysIleIleAspLeuSerLeuAsnThrPheSerSerVal 301996 : AAAATAATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: NvOr17 318 389 . KQ414889.1 301823 302036 + 106 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301824 302036 106 + . gene_id 2 ; sequence NvOr17 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301824 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301824 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301824 302036 106 + . alignment_id 2 ; Query NvOr17 ; Align 301824 319 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr17 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 154 -> 245 Target range: 300159 -> 300429 155 : GluAlaArgGlnTyrSerLeuThrLysAspAsnValThrAlaArgPheArgProLeuT : 174 :!!::!!:!.!.|||!!!! !! !!:!!!:||| !||| !!:! ! ! ! !| LysSerLysAsnTyrThrTyrLysArgGluAsnTyrThrTyrLys---ProLeuAlaT 300160 : AAAAGCAAGAATTACACTTACAAAAGGGAGAATTACACTTACAAA---CCGTTAGCCT : 300214 175 : yrMetSerAlaGlnPhePheTyrAspAlaGlnLysSerProAsnTyrGluIleHisTr : 193 || .!! !.!.!::||| !|||.!!|||! ||||||!.!||||||||| :: yrProGlyTyrAspTrpPheIleAspThrGlnThrSerProThrTyrGluIleValPh 300215 : ATCCTGGCTACGATTGGTTTATCGATACACAAACCAGTCCTACCTACGAgatcgtatt : 300271 194 : pLeuPheGlnCysSerSerThrIlePheAlaAlaSerAlaPheSerSerValAspAla : 212 :...|||...||| !:!!.!!!!:.!! ! !!:!!.! !!!:!!!.! !!::! ePhePheHisCysPheAlaAlaMetIleMetTyrAsnValThrThrAlaAlaTyrSer 300272 : tttctttcactgttTCGCAGCGATGATCATGTACAACGTGACAACGGCAGCGTACAGT : 300328 213 : PhePheAlaValLeuMetLeuHisLeuCysGlyGlnLeuAsnAsnLeuArgGluLysL : 232 !!. |||:!!!!!:!: !|||:!!|||||||||:!!.!.! ! !! !! !!:!| LeuAlaAlaIlePheValThrHisIleCysGlyGlnIleGlnIleGlnMetAlaArgL 300329 : TTGGCGGCGATATTCGTCACTCATATCTGTGGACAGATTCAGATACAGATGGCGAGAT : 300388 233 : euLysLysLeuProLysGlnIleSerAspLysGlyGlyGly : 245 ||:!! ! ||| !:!!::!! .!!!!:|||! !! !||| euGluAspLeuValGluArgThrGlyGluLysAspAspGly 300389 : TGGAGGATCTGGTGGAGAGGACGGGAGAGAAGGACGACGGT : 300429 vulgar: NvOr17 154 245 . KQ414889.1 300159 300429 + 105 M 15 45 G 1 0 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300160 300429 105 + . gene_id 3 ; sequence NvOr17 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 300160 300429 . + . KQ414889.1 exonerate:protein2genome:local exon 300160 300429 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 300160 300429 105 + . alignment_id 3 ; Query NvOr17 ; Align 300160 155 45 ; Align 300205 171 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr18NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 143 -> 235 Target range: 300144 -> 300417 144 : TyrPheThrMetLeuGluSerLysGlnTyrSerLeuThrLysLeuAsnAlaThrThrA : 163 !:!.!.:!!! ! !:!!||||||.!.|||!!!! !! !!:! !||| !||| !! PheLeuSerArgGluLysSerLysAsnTyrThrTyrLysArgGluAsnTyrThrTyrL 300145 : TTCCTGTCGAGGGAGAAAAGCAAGAATTACACTTACAAAAGGGAGAATTACACTTACA : 300202 164 : rgPheArgProLeuTyrMetSerAlaGluPhePheTyrAspIleGlnSerSerProAs : 182 :! ! ! ! !||| .!! !!!:!::||| !|||! !|||!!!||||||!. ys---ProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrGlnThrSerProTh 300203 : AA---CCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACACAAACCAGTCCTAC : 300256 183 : nTyrGluIleIleTrpLeuPheGlnPheLeuSerThrMetPheAlaAlaSerAlaPhe : 201 !|||||||||::::::...|||... .!!:!!.!!|||.!! ! !!:!!.! rTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMetTyrAsnValThr 300257 : CTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCATGTACAACGTGACA : 300313 202 : SerSerValAspAlaPhePheAlaValLeuValLeuHisLeuCysGlyGlnLeuAsnA : 221 !!!:!!!.! !!::!!!. |||:!!!!!||| !|||:!!|||||||||:!!.!.! ThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCysGlyGlnIleGlnI 300314 : ACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGTGGACAGATTCAGA : 300373 222 : snLeuLysGluLysLeuLysAsnPheProLysArgHisGluGlu : 235 ! !! !! !!:!|||:!!:!!.!. !:!!||| ! !||| leGlnMetAlaArgLeuGluAspLeuValGluArgThrGlyGlu 300374 : TACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGGGAGAG : 300417 vulgar: NvOr18NTE 143 235 . KQ414889.1 300144 300417 + 105 M 20 60 G 1 0 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300145 300417 105 + . gene_id 1 ; sequence NvOr18NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 300145 300417 . + . KQ414889.1 exonerate:protein2genome:local exon 300145 300417 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 300145 300417 105 + . alignment_id 1 ; Query NvOr18NTE ; Align 300145 144 60 ; Align 300205 165 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr18NTE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 329 -> 387 Target range: 297641 -> 297815 330 : GluSerMetGluIleGlyAsnAlaAlaTyrGlnCysAsnTrpTyrThrLeuProProS : 349 :!!:!! :!!.!!|||||||||||||||.!. !.!.||||||!.!|||||||||! GlnAlaGluLysPheGlyAsnAlaAlaTyrAsnIleGluTrpTyrAsnLeuProProA 297642 : CAGGCTGAAAAATTCGGCAATGCAGCTTATAACATCGAATGGTACAACTTACCGCCAA : 297699 350 : erGluAlaLysCysLeuThrLeuIleMetIleArgAlaLysGlnProPheGluIleTh : 368 :!..!||| !|||..!|||!!:!!: !! !|||||| ||| ..!:!!|| snArgAlaLeuAspLeuValLeuMetIleGlyIleAlaLysPheProProArgLeuTh 297700 : ACAGGGCTCTCGATCTGGTGTTAATGATCGGTATAGCAAAATTTCCACCGAGGCTCAC : 297756 369 : rAlaGlyLysPheAlaAlaPheSerLeuGluLeuTyrCysArgIleLeuLysSerSer : 387 |...||||||... ...|||:!!.!. !!:! !! !:!!! !!::...||| rGlyGlyLysIlePheAspIleSerIleAsnThrPheSerAlaValArgArgGlnSer 297757 : AggtggaaaaatattcgatatatCGATAAACACGTTCAGTGCCGTACGTAgacaaagt : 297813 vulgar: NvOr18NTE 329 387 . KQ414889.1 297641 297815 + 103 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297642 297815 103 + . gene_id 2 ; sequence NvOr18NTE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297642 297815 . + . KQ414889.1 exonerate:protein2genome:local exon 297642 297815 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297642 297815 103 + . alignment_id 2 ; Query NvOr18NTE ; Align 297642 330 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 300 -> 385 Target range: 254098 -> 254445 301 : IlePhePheMetValPhePheIleGlyHisIleGlySerHisLeuPheIleCysCysT : 320 :!!||| :!! ! :!!! ! !:!!! !|||::: |||::: |||| LeuPheThrTyrIleValThrLeuValAlaValValSerAsnThrPheLeuIleCysT 254099 : TTATTCACGTACATTGTAACACTCGTTGCTGTTGTTtctaatacatttttaatctGTT : 254156 321 : yrValSerGluArgLeuGlnAspGlu >>>> Target Intron 1 >>>> Ser : 329 ||:!!|||!!:|||||| !!!::!! 92 bp !!! yrIleSerAspArgLeuThrGluGln++ ++Cys 254157 : ATATCAGCGACAGGTTGACAGAACAGgt.........................agTGC : 254275 330 : ValSerIleAlaAsnAlaAlaTyrLysCysGlnTrpTyrHisLeuProAlaLysAspV : 349 :!!!.!:!!!.!.!.!.!!.!|||! ! .!.||||||:!!|||||| !!:! : LeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgI 254276 : TTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAA : 254335 350 : alMetLeuLeuValMetValIleAsnArgAlaLysAspProIleGlnIleThrAlaGl : 368 !!:!: !|||:!!:!!:!!|||!..|||:!!!!.! !:!!:!!||||||||||| leLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGl 254336 : TCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctgg : 254392 369 : yLysPheCysValPheSerLeuSerLeuLeuAlaGlnIlePheLysThrSer : 385 ||||... ...||||||! ! !!!!!.!.!.:!! !:!!|||!:! yLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 254393 : aaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 254445 vulgar: NvOr31 300 385 . KQ414889.1 254098 254445 + 116 M 28 84 5 0 2 I 0 88 3 0 2 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254099 254445 116 + . gene_id 1 ; sequence NvOr31 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254099 254182 . + . KQ414889.1 exonerate:protein2genome:local exon 254099 254182 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254183 254184 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254183 254274 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254273 254274 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254275 254445 . + . KQ414889.1 exonerate:protein2genome:local exon 254275 254445 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254099 254445 116 + . alignment_id 1 ; Query NvOr31 ; Align 254099 301 84 ; Align 254275 329 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 180 -> 290 Target range: 286054 -> 286804 181 : SerProAlaTyrGluLeuThrPheAlaMetGlnTyrPheAlaThrValLeuAlaThrP : 200 ||||||:!!!:!|||:!!..! !||||||! !!!.|||.!! !!:!! ! !! SerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrS 286055 : AGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACT : 286112 201 : heSerTyrSerGlyLeuTyrGlyLeuPheValGlyLeuMetLeuHisLeuCysGlyGl : 219 ! ! !||| !! !.!!||| !!.!! !!!!:!::!!|||:!!|||||||| erValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGlyGl 286113 : CGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACA : 286169 220 : nPheAlaAsnLeuArgValLysMetAspLysValAlaLysGlnAlaAspSer{A} > : 237 |||| !! ||| !..!|||:!!||||||:!!!.! ! !!.! ! .!!{ } nPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLysGly{I}+- 286170 : ATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGG{A}gg. : 286226 238 : >>> Target Intron 1 >>>> {la}LysPheArgGlnAsnLeuThrAlaIleI : 247 420 bp { !}!!..!! !:!!||| !.!!!.! ! ++{le}AsnIleTyrGluAsnAlaAlaGly***G 286227 : ........................ag{TA}AATATCTATGAGAACGCAGCTGGCTAAC : 286673 248 : leIleArgHisGlnPheLeuPheArgPheSerGlnIleIleGluLysIlePheAsnVa : 266 !:! !:! :!!|||!!!|||! !..! !|||||| !:!!.!.|||! lnTrpLysIleArgThrIlePheSerPheIleSerGlnIleGluGlyLeuLeuAsnGl 286674 : AGTGGAAAATACGAACGATTTTCAGTTTTATATCGCAAATCGAGGGGCTCCTAAACGA : 286730 267 : lIlePheLeuGlyGluIleLeuGlyCysThrIleGlnPheCysLeuGlnGlyPhePhe : 285 !|||! !!!!! !|||:!::!!|||||||||:!:.!..!.|||!!! !|||!:!!:! uIleCysPheValGluValIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrTyr 286731 : AATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGGGATATTAT : 286787 286 : LeuCysThrLeuSer : 290 ||| |||:!!!!! LeuLeuThrValThr 286788 : TTACTGACGGTAACA : 286804 vulgar: NvOr31 180 290 . KQ414889.1 286054 286804 + 112 M 56 168 S 0 1 5 0 2 I 0 416 3 0 2 S 1 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286055 286804 112 + . gene_id 2 ; sequence NvOr31 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286055 286223 . + . KQ414889.1 exonerate:protein2genome:local exon 286055 286223 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286224 286225 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local intron 286224 286643 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286642 286643 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286644 286804 . + . KQ414889.1 exonerate:protein2genome:local exon 286644 286804 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286055 286804 112 + . alignment_id 2 ; Query NvOr31 ; Align 286055 181 168 ; Align 286646 238 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr31 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 326 -> 381 Target range: 234982 -> 235147 327 : AspGluSerValSerIleAlaAsnAlaAlaTyrLysCysGlnTrpTyrHisLeuProA : 346 .!.:!!!!!..!!.!:!!!.!.!. !!.!|||! ! !:!!||||||!..|||||| GlnGlnCysThrLysValGlyGluLysValTyrMetThrGluTrpTyrArgLeuProH 234983 : CAACAGTGTACCAAAGTCGGAGAAAAAGTGTACATGACCGAATGGTACCGGTTACCTC : 235040 347 : laLysAspValMetLeuLeuValMetValIleAsnArgAlaLysAspProIleGlnIl : 365 !||| !!.!:!: !|||||||||:!!|||::!|||:!!!.. !|||:!!|| isLysThrAlaLeuGlyLeuValMetIleIleSerArgSerSerMetValIleLysIl 235041 : ATAAAACTGCTCTCGGTTTGGTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAAT : 235097 366 : eThrAlaGlyLysPheCysValPheSerLeuSerLeuLeuAlaGlnIle : 381 |||||||||||||||| !.!.|||:!!:!! !!!!!.!.!.:!: eThrAlaGlyLysPheLeuGlnMetSerValAlaThrPheGlyAspVal 235098 : CACCGCTGGAAAATTCCTACAAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: NvOr31 326 381 . KQ414889.1 234982 235147 + 101 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234983 235147 101 + . gene_id 3 ; sequence NvOr31 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 234983 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234983 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234983 235147 101 + . alignment_id 3 ; Query NvOr31 ; Align 234983 327 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 8 -> 293 Target range: 194171 -> 196405 9 : TyrAlaPheGlyMetCysLysLysSerLeuThrLeuIleGlyLeuTrpProLysSerL : 28 |||||| !! !!:!:...||| ! !||||||! !||||||:!!||||||!:!..! TyrAlaValArgValAlaLysAlaLeuLeuThrProIleGlyIleTrpProArgGluA 194172 : TACGCTGTTCGAGTAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAAGGGAGG : 194229 29 : ysSerSerAsnTyrAlaGluAlaValValValLeuArgPheThrLeuThrThrLeuLe : 47 ! ||| ! !!!: !||| !:!!!!! ! ||| !..!..!!!! spSer------LeuArgAspArgValArgLeuPheAlaGlnThrGlyValValPheAl 194230 : ATTCT------CTTCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTTCGC : 194280 48 : uIleValSerPheValAsnIleValGlnThrIleLysLeuLeuAlaValTrpGlyAsp : 66 !:!::!!!!!|||:!! :!! !!!...!||| ! !! ! !! !!! ! !||| aLeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheAspCysGluAsp 194281 : TTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAGGAT : 194337 67 : LeuAspAlaMetThrAspIleIleSerThrAlaAsnLeuProIleAlaValAlaValP : 86 ||| ! ! ! ! :!!|||:!! |||.!.:!! !! ! !:!!|||:!!. LeuThrArgTyrMetLysValIleAla---AlaGlnValPheSerLeuLeuAlaIleI 194338 : CTGACGAGGTACATGAAGGTAATCGCG---GCGCAAGTGTTCAGTCTGTTGGCGATCA : 194394 87 : heLysMetMetValPheTyrLysHisArgLysAlaPheGluProLeuLeuSerPheVa : 105 !!|||.!. !..!.!. ! !:!!||||||! !.!!..! !! !||| ! :! leLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeuLeuGluMe 194395 : TCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGAT : 194451 106 : lGluAlaAspTrpLysSerTyrLysThrAspSerAspMetThrAsnMetTrpSerAsn : 124 !|||.!!.!.!::!:!..! :!! !!!:..!||| ! ||| !!:! ! tGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetThrAsnCys 194452 : GGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGC : 194508 125 : AlaGlnThrThrArgArgIleSerMetIleCysValIleLeuGly<->AlaGlyThrV : 143 |||:!!! ! !||| !.!!!!!! :!:! !:!! !|||..! !.!|||.!!: AlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaL 194509 : GCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTT : 194568 144 : alAsnGlyHisLeuPheIleArgLeuGlyGlnGluAlaLysIleLeuProGlyLysAs : 162 !! !|||:!!.!!:!!! !||| !..!||| !! :!! ! !! !!!... euProTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGluAspAsnSe 194569 : TGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAACAG : 194625 163 : pGlyAlaThrArgLeuSerPheValAspSerTyrPheProTyrAspTyrSerProThr : 181 ! ! !! !! !||| !!!:!:!!..!!:!||| !! !!:!! !..! !:!! rThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleGluAspSer 194626 : TACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGACTCG : 194682 182 : ProIleTyrGluIleThrTrpAlaIleGlnTyrIleGlyAlaAlaLeuAlaThrCysA : 201 ||||||||||||||||||!::!.! ||| :!: !::!::!:!! ! !! . ProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuSerT 194683 : CCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGTCGA : 194742 202 : laTyrSerGlyIleTyrCysLeuPheValAlaLeuMetLeuHisLeuCysGlyGlnPh : 220 !! !!!!!||||||||| !!||| !!!.!.!!:!!!!::!!|||! !|||||| !|| hrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCysGlyLeuPh 194743 : CGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTTGTT : 194799 221 : eSerAsnLeuArgLysLysLeuArgArgValValThrAsnGluAspAspLysArgLys : 239 |..! !!!!!:!!:!:!!..!! !:!! ::!! ! ! ! !!:! ! eGluValThrSerArgArgMetGluThrIle------SerValProThrGlyLysAsp 194800 : CGAAGTGACCAGCAGAAGGATGGAGACTATT------TCTGTGCCCACTGGGAAGGAT : 194850 240 : PheValGluLysLeuAlaGluIleValLysArgHisGluAsnLeuAsn{As} >>>> : 256 .!! !! !:!||| !!!::!!|||:!! !||| !!!. !! !{!!} IleArgGlyArgLeuArgAspValValGlnPheHisLeuLysAlaIle{Ly}++ 194851 : ATTCGGGGTAGACTTAGGGACGTCGTTCAGTTTCATCTGAAAGCAATT{AA}gt.... : 194905 257 : Target Intron 1 >>>> {n}PheAlaArgValIleGluLysIlePheAsnLe : 267 1391 bp {.}||||||..!:!!||||||||| !.!.|||:! ++{s}PheAlaGluMetIleGluLysAlaLeuAsnIl 194906 : .....................ag{a}tTCGCTGAAATGATCGAGAAAGCACTGAACAT : 196325 268 : uMetPheLeuAlaGluIleLeuGlyCysThrIleGlnPheCysMetGlnGlyPhePhe : 286 !:!!||||||:!!|||!!:||||||||||||||| .!.|||.!.! !! !!:! ! eValPheLeuSerGluMetLeuGlyCysThrIleIleIleCysPheLeuGluTyrGly 196326 : CGTGTTTCTATCAGAGATGCTTGGCTGCACTATCATCATATGTTTCCTGGAATACGGT : 196382 287 : LeuLeuThrLeuSerSerLys : 293 :!!:!!..!:!! !!.!!:! ValIleValValHisLysArg 196383 : GTAATCGTGGTACACAAGAGA : 196405 vulgar: NvOr28 8 293 . KQ414889.1 194171 196405 + 166 M 21 63 G 2 0 M 44 132 G 1 0 M 63 189 G 0 3 M 91 273 G 2 0 M 23 69 S 0 2 5 0 2 I 0 1387 3 0 2 S 1 1 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194172 196405 166 + . gene_id 1 ; sequence NvOr28 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 194172 194902 . + . KQ414889.1 exonerate:protein2genome:local exon 194172 194902 . + . insertions 3 ; deletions 5 KQ414889.1 exonerate:protein2genome:local splice5 194903 194904 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 194903 196293 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 196292 196293 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 196294 196405 . + . KQ414889.1 exonerate:protein2genome:local exon 196294 196405 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194172 196405 166 + . alignment_id 1 ; Query NvOr28 ; Align 194172 9 63 ; Align 194235 32 132 ; Align 194367 77 189 ; Align 194559 140 273 ; Align 194832 233 69 ; Align 196295 257 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 16 -> 251 Target range: 208236 -> 208947 17 : SerLeuThrLeuIleGlyLeuTrpProLysSerLysSerSerAsnTyrAlaGluAlaV : 36 !!!|||! !:!!||||||! !||||||!:!|||! !..! !!::!!:: !||| ! ThrLeuLysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnS 208237 : ACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACA : 208294 37 : alValValLeuArgPheThrLeuThrThrLeuLeuIleValSerPheValAsnIleVa : 55 ! ! !:!!! !!!.!.!:!! !!:!! !! !:!::!!.!!|||:!! ||| erGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIlePr 208295 : GCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACC : 208351 56 : lGlnThrIleLysLeuLeuAlaValTrpGlyAspLeuAspAlaMetThrAspIleIle : 74 ! !!!: !:!! !||| ! !|||!!! !!! !... ! ! ||| ! oThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCys 208352 : GACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGT : 208408 75 : SerThrAlaAsnLeuProIleAlaValAlaValPheLysMetMetValPheTyrLysH : 94 |||.!! !!:!!!! .!! !:!!||| !! ||| :!!:!!.!. ! ! SerAlaLeuSerPhe---PheMetMetAlaPheThrLysTyrValIleMetThrValA 208409 : AGCGCTCTGAGCTTC---TTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCC : 208465 95 : isArgLysAlaPheGluProLeuLeuSerPheValGluAlaAspTrpLysSerTyrLy : 113 .!..! ! !.!...! !! !:!!..!!:!|||||||||||||||!:!!:! :! rgGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGl 208466 : GCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGA : 208522 114 : sThrAspSerAspMetThrAsnMetTrpSerAsnAlaGlnThrThrArgArgIleSer : 132 ! !!!:..!|||! !! !! !|||! !..!||||||... !.!!|||!:!:!:! ! uHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIle 208523 : GCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATC : 208579 133 : MetIleCys<->ValIleLeuGlyAlaGlyThrValAsnGlyHisLeuPheIleArgL : 151 :!!|||||| !.!.!!:!! !!.!|||...::: ::::!! !:!:! !| ValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProL 208580 : GTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGC : 208639 152 : euGlyGlnGluAlaLysIleLeuProGlyLysAsp<->GlyAlaThrArgLeuSerPh : 169 || !!:!!!: ! :!! ! !||| :!! ! !! !|||||| !!: euThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTy 208640 : TCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTA : 208696 170 : eValAspSerTyrPheProTyrAspTyrSerProThrProIleTyrGluIleThrTrp : 188 ! !! ! !! ! ||| ! ||| ! !! !!:!|||:!: !!|||||| !!:: rProValProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyr 208697 : TCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTAT : 208753 189 : AlaIleGlnTyrIleGlyAlaAlaLeuAlaThrCysAlaTyrSerGlyIleTyrCysL : 208 .!!:!!|||! :!:..!!.! !:!!||| ! ! ! !||| !! ! !!| ThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyL 208754 : ACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTT : 208813 209 : euPheValAlaLeuMetLeuHisLeuCysGlyGlnPheSerAsnLeuArgLysLysLe : 227 || !!.! !||| !:!!||| !|||||||||.!...!! !|||! !... !:! euAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMe 208814 : TGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGAT : 208870 228 : uArgArgValValThr<->AsnGluAspAspLysArgLysPheValGluLysLeuAla : 245 !..!!:!:!!||| ! ...||||||!!::!!!:!!!.!!.! !:!!!:!|||||| tGluLysLeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAla 208871 : GGAGAAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCT : 208927 246 : GluIleValLysArgHis : 251 .!.||||||:!!!:!||| AsnIleValGluGlnHis 208928 : AATATCGTGGAGCAGCAT : 208947 vulgar: NvOr28 16 251 . KQ414889.1 208236 208947 + 148 M 63 189 G 1 0 M 55 165 G 0 3 M 27 81 G 0 3 M 70 210 G 0 3 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208237 208947 148 + . gene_id 2 ; sequence NvOr28 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208237 208947 . + . KQ414889.1 exonerate:protein2genome:local exon 208237 208947 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208237 208947 148 + . alignment_id 2 ; Query NvOr28 ; Align 208237 17 189 ; Align 208426 81 165 ; Align 208594 136 81 ; Align 208678 163 210 ; Align 208891 233 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 176 -> 291 Target range: 279092 -> 280017 177 : AspTyrSerProThrProIleTyrGluIleThrTrpAlaIleGlnTyrIleGlyAlaA : 196 ||| !! !!!:!||| !:!||||||..! !!!:|||! !:!:!.!||| AspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaP 279093 : GATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGT : 279150 197 : laLeuAlaThrCysAlaTyrSerGlyIleTyrCysLeuPheValAlaLeuMetLeuHi : 215 !:!! ! !! !.! ! !||| !! ! !!|||.!!!.!!.!!!!:!::!!|| heValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHi 279151 : TCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCA : 279207 216 : sLeuCysGlyGlnPheSerAsnLeuArgLysLysLeuArgArgValValThrAsnGlu : 234 |:!!||||||||||||!!!! ||| !! !|||||| !!:!:!!:!! !...! ! sValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyVal 279208 : CGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTG : 279264 235 : AspAsp{Ly} >>>> Target Intron 1 >>>> {s}ArgLysPheValGluL : 243 ! ! {!:} 580 bp {!} ...||| |||| LysGly{Ar}+- +-{g}IleAsnPheCysGluL 279265 : AAAGGG{AG}ga.........................at{a}ataaatttctgtgaGA : 279871 244 : ysLeuAlaGluIleValLysArgHisGluAsnLeuAsnAsnPheAlaArgValIleGl : 262 || !|||||| ! ! !!:! ..!!..:!! !!:!||| ! ! !||||| ysAlaAlaGlu***GlnTrpLysIleArgThrIlePheSerPheIleSerGlnIleGl 279872 : AAGCAGCTGAGTAACAGTGGAAAATACGAACGATTTTCAGTTTTATATCGCAAATCGA : 279928 263 : uLysIlePheAsnLeuMetPheLeuAlaGluIleLeuGlyCysThrIleGlnPheCys : 281 | !:!!.!.||| !!!:! !!!!!.!|||:!::!!|||||||||:!:.!..!.||| uGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsnIleCys 279929 : GGGGCTCCTGAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGC : 279985 282 : MetGlnGlyPhePheLeuLeuThrLeuSer : 291 .!. ! !!:!!:!|||||||||:!!!!! PheLeuThrTyrTyrLeuLeuThrValThr 279986 : TTTTTGACATATTATTTACTCACGGTAACA : 280017 vulgar: NvOr28 176 291 . KQ414889.1 279092 280017 + 107 M 60 180 S 0 2 5 0 2 I 0 576 3 0 2 S 1 1 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 279093 280017 107 + . gene_id 3 ; sequence NvOr28 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 279093 279274 . + . KQ414889.1 exonerate:protein2genome:local exon 279093 279274 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 279275 279276 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 279275 279854 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279853 279854 . + . intron_id 0 ; splice_site "at" KQ414889.1 exonerate:protein2genome:local cds 279855 280017 . + . KQ414889.1 exonerate:protein2genome:local exon 279855 280017 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 279093 280017 107 + . alignment_id 3 ; Query NvOr28 ; Align 279093 177 180 ; Align 279856 238 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr28 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 176 -> 291 Target range: 286042 -> 286804 177 : AspTyrSerProThrProIleTyrGluIleThrTrpAlaIleGlnTyrIleGlyAlaA : 196 ||| !! !!!:!||| !:!||||||..! !!!:|||! !:!:!.!||| AspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaP 286043 : GATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGT : 286100 197 : laLeuAlaThrCysAlaTyrSerGlyIleTyrCysLeuPheValAlaLeuMetLeuHi : 215 !:!! ! !! !.! ! !||| !! ! !!||| !!.!!.!!!!:!::!!|| heValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHi 286101 : TCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCA : 286157 216 : sLeuCysGlyGlnPheSerAsnLeuArgLysLysLeuArgArgValValThrAsnGlu : 234 |:!!||||||||||||!!!! ||| !! !|||||| !!:!:!!||| !...! ! sValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyVal 286158 : CGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTG : 286214 235 : AspAsp{Ly} >>>> Target Intron 1 >>>> {s}ArgLysPheValGluL : 243 ! ! {!:} 417 bp {!} !!!..!! !|||! LysGly{Ar}+- +-{g}ValAsnIleTyrGluA 286215 : AAAGGG{AG}ga.........................at{A}GTAAATATCTATGAGA : 286658 244 : ysLeuAlaGluIleValLysArgHisGluAsnLeuAsnAsnPheAlaArgValIleGl : 262 !. !|||! ! ! !!:! ..!!..:!! !!:!||| ! ! !||||| snAlaAlaGly***GlnTrpLysIleArgThrIlePheSerPheIleSerGlnIleGl 286659 : ACGCAGCTGGCTAACAGTGGAAAATACGAACGATTTTCAGTTTTATATCGCAAATCGA : 286715 263 : uLysIlePheAsnLeuMetPheLeuAlaGluIleLeuGlyCysThrIleGlnPheCys : 281 | !:!!.!.||| !!!:! !!!!!.!|||:!::!!|||||||||:!:.!..!.||| uGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsnIleCys 286716 : GGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGC : 286772 282 : MetGlnGlyPhePheLeuLeuThrLeuSer : 291 .!. !|||!:!!:!|||||||||:!!!!! PheLeuGlyTyrTyrLeuLeuThrValThr 286773 : TTTTTGGGATATTATTTACTGACGGTAACA : 286804 vulgar: NvOr28 176 291 . KQ414889.1 286042 286804 + 101 M 60 180 S 0 2 5 0 2 I 0 413 3 0 2 S 1 1 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 286043 286804 101 + . gene_id 4 ; sequence NvOr28 ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 286043 286224 . + . KQ414889.1 exonerate:protein2genome:local exon 286043 286224 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286225 286226 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 286225 286641 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286640 286641 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 286642 286804 . + . KQ414889.1 exonerate:protein2genome:local exon 286642 286804 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 286043 286804 101 + . alignment_id 4 ; Query NvOr28 ; Align 286043 177 180 ; Align 286643 238 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr17 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 191 -> 328 Target range: 1681935 -> 1682349 192 : HisTrpLeuPheGlnCysSerSerThrIlePheAlaAlaSerAlaPheSerSerVa : 210 |||::: !!!.||| ! !|||..!:!: !:!!!.!! !..!|||!!!!!! ! HisPheThrLeuGlnThrLeuSerValValHisSerGlyIleCysPheCysCysPh 1681936 : catttcaCTTTGCAGACATTATCTGTGGTGCATTCGGGAATTTGTTTCTGTTGTTT : 1681990 211 : lAspAlaPhePheAlaValLeuMetLeuHisLeuCysGlyGlnLeuAsnAsnLeuA : 229 !||| !|||.!...!:!!|||! :!!|||:!! !!||||||!!!!!.! !|||! eAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLysIleLeuG 1681991 : CGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAGATTTTAC : 1682047 230 : rgGluLysLeuLysLys<->LeuProLysGlnIleSerAspLysGlyGlyGlySer : 246 :!.!.||||||:!!! ! ||| !:!!:!: ||| ::: .......!! lnAsnLysLeuGlnThrValLeuSerGluLysSerSerLysGluLysSerAlaGly 1682048 : AAAACAAACTCCAAACAGTATTGAGTGAGAAatcttcgaaagaaaaatcagctGGA : 1682101 247 : PheValGluLysLeuSerGluIleValThrArgHisAspHisLeuAspArgPheGl : 265 .!. !:!!:!!!!!!.!||| !||| ! !||| !! ||| ! !::: LeuTyrLysGluPheLysGluCysValGlnTyrHisHisLeuLeuLeuSerTyrVa 1682102 : CTGTATAAAGAGTTCAAGGAGTGCGTACAGTATCATCATTTGCTTCTTTCGtacgt : 1682158 266 : yAsnAlaIleGluAspAlaPheAsnValMetPheLeuValGlnMetValAlaSerS : 284 ... :::||| ..!||| !||| !!!.:!!:!!|||:!!:!!!.!|||| lGluLysLeuGluTyrValPheCysValProLeuMetIleGlnLeuLeuValSerS 1682159 : ggaaaaattggaatacgTATTTTGTGTCCCGTTGATGATTCAATTGCTGGTGTCTA : 1682215 285 : erMetValLeuCysLeuGlnGlyTyrGlnLeuValMetIleThrThrAlaGlyAsp : 302 ||!!:|||||||||:!!..!|||!:!|||||| !:!!:!:! ! ! ! !||| erIleValLeuCysValSerGlyPheGlnLeuSerLeuValArg***LeuMetAsp 1682216 : GCATAGTTCTGTGCGTCTCGGGGTTTCAACTATCATTGGTGAGATAATTAATGGAC : 1682269 303 : GlyIleProLeuPheGluLeuIlePheMetIleTyrPheThrCysCysPheThrPh : 321 !:!! ! !.!. !!:!!:!!...:::||||||::: ::: .. LeuValCysArgIle***IleLeuLeuIleIleTyrTyrPheIleArgTyrTyrLe 1682270 : TTAGTATGCAGAATATAAATACTACttattatttactattttattcggtattattt : 1682326 322 : eSerLeuPheValTyrCysTyr : 328 . :::::: ::: ::: uPheIleTyrTyrPheIleHis 1682327 : atttatttactattttattcat : 1682349 vulgar: NvOr17 191 328 . KQ414915.1 1681935 1682349 + 136 M 43 129 G 0 3 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681936 1682349 136 + . gene_id 1 ; sequence NvOr17 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1681936 1682349 . + . KQ414915.1 exonerate:protein2genome:local exon 1681936 1682349 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681936 1682349 136 + . alignment_id 1 ; Query NvOr17 ; Align 1681936 192 129 ; Align 1682068 235 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr22 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 184 -> 285 Target range: 1681947 -> 1682256 185 : GlnPheAlaGlyAlaLeuLeuSerThrPheIlePheSerSerPheAspGlyPhePh : 203 ||| !..!!.!:!!! !||| !.!! !|||!!!!!!||||||..!|||.! GlnThrLeuSerValValHisSerGlyIleCysPheCysCysPheAspAsnPheLe 1681948 : CAGACATTATCTGTGGTGCATTCGGGAATTTGTTTCTGTTGTTTCGACAATTTCCT : 1682002 204 : eValPheSerIleLeuHisPheSerSerGlnLeuSerAsnLeuAsnIleArgIleA : 222 . !.!. !! !:!!||| !!.!!.!!|||!!!!.!! !|||.!.! !!:!:!!! uCysIleLeuSerMetHisValGlyGlyGlnPheLysIleLeuGlnAsnLysLeuG 1682003 : GTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAGATTTTACAAAACAAACTCC : 1682059 223 : rgSer<->LeuThrGluLysThrSerGlyAspLys<->CysGlnPheValGluSer : 238 :!!!! |||!:!||||||:::||| :::||| ... !.!. !:!!..! lnThrValLeuSerGluLysSerSerLysGluLysSerAlaGlyLeuTyrLysGlu 1682060 : AAACAGTATTGAGTGAGAAatcttcgaaagaaaaatcagctGGACTGTATAAAGAG : 1682113 239 : LeuLysSerValValLysHisHisGlnHisLeuIleSerTyrThrAspIleIleGl : 257 !!!|||..! !|||:!!:!!|||!!. |||:!!||||||...::: :::|| PheLysGluCysValGlnTyrHisHisLeuLeuLeuSerTyrValGluLysLeuGl 1682114 : TTCAAGGAGTGCGTACAGTATCATCATTTGCTTCTTTCGtacgtggaaaaattgga : 1682170 258 : uTyrAsnPheAsnLysIlePheLeuValGlnIlePheAlaThrSerIleValLeuC : 276 |||| ||| ! !!.:!!:!!|||:!:.!.!.!:!!||||||||||||| uTyrValPheCysValProLeuMetIleGlnLeuLeuValSerSerIleValLeuC 1682171 : atacgTATTTTGTGTCCCGTTGATGATTCAATTGCTGGTGTCTAGCATAGTTCTGT : 1682227 277 : ysLeuGlnGlyTyrGlnPheValMetIle : 285 ||:!!..!|||!:!|||.!. !:!!:!: ysValSerGlyPheGlnLeuSerLeuVal 1682228 : GCGTCTCGGGGTTTCAACTATCATTGGTG : 1682256 vulgar: NvOr22 184 285 . KQ414915.1 1681947 1682256 + 120 M 39 117 G 0 3 M 9 27 G 0 3 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681948 1682256 120 + . gene_id 1 ; sequence NvOr22 ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1681948 1682256 . + . KQ414915.1 exonerate:protein2genome:local exon 1681948 1682256 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681948 1682256 120 + . alignment_id 1 ; Query NvOr22 ; Align 1681948 185 117 ; Align 1682068 224 27 ; Align 1682098 233 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr27 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 331 -> 417 Target range: 807335 -> 807593 332 : LeuValSerIlePheThrTyrCysTyrValAlaGluArgLeuArgGluGlnSerGluA : 351 |||:!!..!:!:!:! !|||..!|||!.!!.!.!.! !|||..!..!!:!!!!|||. LeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluG 807336 : CTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAG : 807393 352 : snLeuPheArgAlaIlePheGluIleArgTrpTyrAspLeuAlaProAsnAspSerLy : 370 !.:!! !:!||| !!:!!!: !! !|||||| !! ! ! !:!!! :!!!: luIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaAr 807394 : AAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAG : 807450 371 : sLeuLeuIleIleIleMetThrGlnThrLysThrProIleGluIleThrValGlyLys : 389 ! !|||:!!:!:|||!!: !!:! !!!.:!!||| !...||||||!.!|||||| gAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLys 807451 : AGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAA : 807507 390 : PheValAlaPheSerLeuGlyTyrPheCysSerValLeuLysThrSerAlaGlyTyrL : 409 |||||| !!.!.!:!||| ! !||| ..!:!!||||||.!!|||!.!..!|||| PheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrL 807508 : TTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATC : 807567 410 : euSerMetLeuLeuAlaValGlnAsp : 417 |||||:!::!! !!.!:!!..!||| euSerValMetLysValMetMetAsp 807568 : TGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: NvOr27 331 417 . KQ414940.1 807335 807593 + 137 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807336 807593 137 + . gene_id 1 ; sequence NvOr27 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807336 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807336 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807336 807593 137 + . alignment_id 1 ; Query NvOr27 ; Align 807336 332 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr17 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 320 -> 405 Target range: 807338 -> 807593 321 : PheSerLeuPheValTyrCysTyrValAlaGluValLeuArgThrGluSerMetGluV : 340 .!!..!|||!:!:!!|||..!|||!.!!.!.!...!|||..!:!!..!!!! |||: IleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluI 807339 : ATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAA : 807396 341 : alGlyAsnAlaAlaTyrGluSerAsnTrpTyrAspLeuProSerCysGluThrLysLe : 359 !!!.!.!.|||||||||!!:||| !|||||| !! !! !.!! !! !.!!!:! leAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAs 807397 : TTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGA : 807453 360 : uLeuMetLeuValIleIleArgAlaLysLysProPheLysIleThrAlaGlyLysPhe : 378 !|||:!:|||:!!||| !|||!.!!!...!|||!:!:::|||||||||||||||||| pLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPhe 807454 : TCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTC : 807510 379 : AlaAlaPheSerLeuGlyLeuTyrCysSerIleLeuArgSerSerGlyGlyTyrLeuS : 398 !.! !!.!.!:!||| ! !!:! ..!||||||!:!:!!||||||..!||||||| ValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuS 807511 : GTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGT : 807570 399 : erMetLeuLeuAlaMetLysAsp : 405 ||:!::!! !!.!|||! !||| erValMetLysValMetMetAsp 807571 : CTGTAATGAAGGTAATGATGGAC : 807593 vulgar: NvOr17 320 405 . KQ414940.1 807338 807593 + 167 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807339 807593 167 + . gene_id 1 ; sequence NvOr17 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807339 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807339 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807339 807593 167 + . alignment_id 1 ; Query NvOr17 ; Align 807339 321 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr18NTE Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 314 -> 399 Target range: 807338 -> 807593 315 : PheSerLeuPheValTyrCysTyrValAlaGluValLeuArgThrGluSerMetGluI : 334 .!!..!|||!:!:!!|||..!|||!.!!.!.!...!|||..!:!!..!!!! |||| IleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluI 807339 : ATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAA : 807396 335 : leGlyAsnAlaAlaTyrGlnCysAsnTrpTyrThrLeuProProSerGluAlaLysCy : 353 ||!.!.!.|||||||||.!.! ! !|||||| !! !! ! ! !! !|||!:! leAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAs 807397 : TTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGA : 807453 354 : sLeuThrLeuIleMetIleArgAlaLysGlnProPheGluIleThrAlaGlyLysPhe : 372 !||| !||||||!!: !|||!.!!!...!|||!:!...|||||||||||||||||| pLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPhe 807454 : TCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTC : 807510 373 : AlaAlaPheSerLeuGluLeuTyrCysArgIleLeuLysSerSerGlyGlyTyrLeuS : 392 !.! !!.!.!:!||| !!:! ..!|||||||||:!!||||||..!||||||| ValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuS 807511 : GTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGT : 807570 393 : erMetLeuLeuAlaValLysAsp : 399 ||:!::!! !!.!:!!! !||| erValMetLysValMetMetAsp 807571 : CTGTAATGAAGGTAATGATGGAC : 807593 vulgar: NvOr18NTE 314 399 . KQ414940.1 807338 807593 + 159 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807339 807593 159 + . gene_id 1 ; sequence NvOr18NTE ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807339 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807339 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807339 807593 159 + . alignment_id 1 ; Query NvOr18NTE ; Align 807339 315 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr21 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 319 -> 403 Target range: 807335 -> 807587 320 : IleLeuSerLeuPheValTyrCysTyrValAlaGluLysLeuArgLysGluSerThrG : 339 :!::!!..!|||!:!:!!|||..!|||!.!!.!.!.! !|||..!..!..!!!! !| LeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluG 807336 : CTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAG : 807393 340 : luIlePheTyrAlaValCysAlaMetProTrpHisGluValLysProGluGluSerLy : 358 ||||| ! |||!.!! !! ! ! !|||:!!... ! ! !.!.! !:!!!: luIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaAr 807394 : AAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAG : 807450 359 : sMetIleValAsnIleMetTyrAlaAlaLysHisProPheGluIleThrAlaGlyLys : 377 ! :!!:!! |||!!::!! !!.!!!. |||!:!...||||||||||||||| gAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLys 807451 : AGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAA : 807507 378 : PheAlaValLeuSerPheSerTyrPheValLysValLeuLysThrAlaMetGlyTyrL : 397 |||!.! !:!!!:!.!!! ! !||| !:!!:!!||||||.!!:!! ..!|||| PheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrL 807508 : TTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATC : 807567 398 : euSerMetLeuLeuAlaMet : 403 |||||:!::!! !!.!||| euSerValMetLysValMet 807568 : TGTCTGTAATGAAGGTAATG : 807587 vulgar: NvOr21 319 403 . KQ414940.1 807335 807587 + 117 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807336 807587 117 + . gene_id 1 ; sequence NvOr21 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807336 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807336 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807336 807587 117 + . alignment_id 1 ; Query NvOr21 ; Align 807336 320 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr22 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 307 -> 388 Target range: 807335 -> 807578 308 : ValLeuSerLeuPheMetTyrCysTyrIleAlaGluIleIleArgAsnGluSerGlnA : 327 :!!:!!..!|||!:!:!:|||..!||| !.!.!.! !:!!..!:::..!!!!:!!. LeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluG 807336 : CTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAG : 807393 328 : rgLeuLeuArgAlaValTyrGluMetLysTrpTyrThrLeuProAlaLysAspSerCy : 346 .!:!! !!:!|||!.!|||!!: |||||| !! !! !!.! ! ! :!! ! luIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaAr 807394 : AAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAG : 807450 347 : sLeuLeuLeuIleValMetCysArgLeuLysMetProValGluIleThrValGlyLys : 365 !||||||:!::!!!!: !||| !!!. !||| !...||||||!.!|||||| gAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLys 807451 : AGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAA : 807507 366 : PheAlaProPheSerLeuGluTyrPheAlaSerValValLysThrSerValGlyTyrL : 385 |||!.!|||.!.!:!||| !||| !..!:!!:!!|||.!!|||! !..!|||| PheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrL 807508 : TTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATC : 807567 386 : euSerValLeu : 388 ||||||||:!! euSerValMet 807568 : TGTCTGTAATG : 807578 vulgar: NvOr22 307 388 . KQ414940.1 807335 807578 + 133 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807336 807578 133 + . gene_id 1 ; sequence NvOr22 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807336 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807336 807578 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807336 807578 133 + . alignment_id 1 ; Query NvOr22 ; Align 807336 308 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr19 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 243 Query range: 179 -> 402 Target range: 806505 -> 807593 180 : PheAspProGlnSerTyrProAsnTyrGlnIleThrTrpThrLeuGlnIleIleAlaT : 199 |||! !||| ! !!! ! !:!!:!! !..!! !|||||| !!: !! PheGlyProLeuProLeuGlnHisHisValCysValLeuLeuLeuGlnGlyMetHisI 806506 : TTCGGCCCTTTACCGTTGCAGCATCACGTCTGCGTGTTACTGCTGCAAGGGATGCACA : 806563 200 : hrPheLeuAlaAlaGlyAlaPheSerSerValAspAlaLeuPheValThrLeuValLe : 218 !|||!!! !|||! !||| !!!!.!! !|||!.!|||||| !!!:!|||..!:! lePhePheAsnAlaValAlaHisCysGlyAsnAspGlyLeuPhePheSerLeuThrMe 806564 : TTTTCTTCAACGCCGTGGCTCACTGCGGCAACGACGGCCTCTTCTTCAGCCTGACGAT : 806620 219 : uHisLeuCysGlyGlnLeuThrAsnLeuGlnAlaAlaPheSerGluIleGlyGluGlu : 237 !|||||||||||||||!!! !! !|||:!! ! !.!.:!!||||||! ! ||| tHisLeuCysGlyGlnPheGluIleLeuLysMetAsnLeuAlaGluIleGluPheGlu 806621 : GCATCTGTGCGGTCAGTTTGAAATTCTGAAGATGAATCTGGCGGAGATCGAGTTCGAG : 806677 238 : AsnAlaGluLysGlyThrMetPheValSerLysLeuSerLysLeuIleGluArgHisA : 257 !.!! ! ! ! !!.!::!:!!.!! |||:!::!!|||||| ------------AlaIleAlaCysArgLysArgIleGlyValLeuValLysArgHisC 806678 : ------------GCGATCGCTTGTCGGAAGCGAATCGGCGTTCTCGTGAAACGACACT : 806725 258 : rgLysIleAsnValPheAlaAspIleIleGluTyrSerPheAsnMetMetPheLeuVa : 276 !!|||:!: |||!!..!!:!! !:!!||| ! ||||||!:!|||!!:.!!||||| ysLysLeuAlaValLeuThrAsnAspLeuGluGlnSerPheSerMetIleIleLeuVa 806726 : GCAAACTGGCGGTGTTGACCAACGATCTCGAGCAGAGCTTCAGTATGATTATTCTGGT : 806782 277 : lGlnValLeuSerSerThrLeuLeuLeuCysLeuGln{G} >>>> Target Intr : 289 ||||:!!:!!! !|||.!!||||||:!!|||:!!:!!{|} 437 bp lGlnLeuMetMetSerAlaLeuLeuIleCysValGlu{G}++ 806783 : GCAACTCATGATGAGTGCGTTGCTAATTTGCGTAGAA{G}gt................ : 806824 290 : on 1 >>>> {ly}TyrLeuPheMetIleIleLeuSerGlyGlnAspGlyLeuLeuV : 304 {||}!:!:!!|||:!!:!! !|||||| !:!!|||..!:!! !! ++{ly}PheValPheLeuValAlaLeuSerThrLysAspAsnValAlaA 806825 : .........ag{GT}TTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAG : 807303 305 : alGluMetIlePheIleSerTyrPheThrIleCysPheThrPheSerIlePheValTy : 323 .! !! !! !|||:!! ! ! |||:!: !.!!..!:!:!:!:!!|| laLeuArgSerPheValLeuMetValThrLeu------LeuIleGlnLeuTyrLeuTy 807304 : CATTGAGGAGCTTCGTTCTGATGGTGACTTTG------CTGATTCAGCTGTACCTTTA : 807354 324 : rCysTyrValAlaGluLeuLeuGlnGluLysSerLeuGlnLeuGlyTyrAlaIlePhe : 342 |..!|||!.!!.!.!. !|||:!!..!::!!!! !:!!:!!!.! ! ||| !!:! rAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyr 807355 : CGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTAT : 807411 343 : TyrSerLysTrpTyrAsnLeuProAlaLysLysAlaArgLeuLeuIleIleSerIleV : 362 !!||| ||||||..!! !! !!.! ! !|||||| !|||:!!:!:! !||| AspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleH 807412 : GACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCC : 807471 363 : alArgCysLysArgProLeuGluIleSerAlaGlyLysPheCysIlePheSerLeuAs : 381 !||| ! !!. !|||! !...|||!!!|||||||||||| ! .!.!:!||| isArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPh 807472 : ATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTT : 807528 382 : nLeuPheCysAsnIleValArgThrSerAlaGlyTyrMetSerValLeuLeuAlaVal : 400 ! !||| .!.|||:!!!:!.!!|||!.!..!|||:!!||||||:!! !!.!:!! eThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSerValMetLysValMet 807529 : CACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807585 401 : LysAsp : 402 ! !||| MetAsp 807586 : ATGGAC : 807593 vulgar: NvOr19 179 402 . KQ414940.1 806505 807593 + 243 M 58 174 G 4 0 M 47 141 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 25 75 G 2 0 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806506 807593 243 + . gene_id 1 ; sequence NvOr19 ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 806506 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806506 806821 . + . insertions 0 ; deletions 4 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807258 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807593 . + . insertions 0 ; deletions 2 KQ414940.1 exonerate:protein2genome:local similarity 806506 807593 243 + . alignment_id 1 ; Query NvOr19 ; Align 806506 180 174 ; Align 806680 242 141 ; Align 807261 290 75 ; Align 807336 317 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr30PSE Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 324 -> 408 Target range: 807341 -> 807593 325 : HisLeuPheIleCysCysTyrValSerGluLysLeuLysValGluSerThrSerIleA : 344 !!.|||!:!:!!! !..!|||!.!.!!.!.! !|||:!! !..!!!! !..!|||| GlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluIleA 807342 : CAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAATTG : 807399 345 : laLysAlaAlaTyrGluCysGlnTrpTyrAspLeuSerProLysAspIleMetLeuLe : 363 ||:!!|||||||||!!:! !! |||||| !! ! ! ! ! ! !! !|| laGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAspLe 807400 : CACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCT : 807456 364 : uValMetValIleAsnArgAlaLysAspProIleGluIleThrAlaGlyLysPheCys : 382 |:!!:!!:!!|||:!!|||!.!!!....||| !...|||||||||||||||||| ! uLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheVal 807457 : CCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCGTC : 807513 383 : ThrTyrSerLeuSerLeuTyrAlaGlnIlePheLysThrSerGlyGlyTyrLeuSerM : 402 !! !:!|||! ! !!:! !:!!|||.!.|||.!!||||||..!|||||||||: ProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSerV 807514 : CCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTG : 807573 403 : etLeuLeuAlaValArgAsp : 408 !::!! !!.!:!!! !||| alMetLysValMetMetAsp 807574 : TAATGAAGGTAATGATGGAC : 807593 vulgar: NvOr30PSE 324 408 . KQ414940.1 807341 807593 + 142 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807342 807593 142 + . gene_id 1 ; sequence NvOr30PSE ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807342 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807342 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807342 807593 142 + . alignment_id 1 ; Query NvOr30PSE ; Align 807342 325 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr32NTE Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 215 Query range: 181 -> 386 Target range: 806544 -> 807578 182 : IleIleGlnAlaPheCysThrPheSerAlaThrThrAlaTyrSerGlyIleAspSerP : 201 :!::!:|||!.!.!. !! !|||! ! !.!!..!|||:!!!!!|||! !|||.!!. LeuLeuGlnGlyMetHisIlePhePheAsnAlaValAlaHisCysGlyAsnAspGlyL 806545 : CTGCTGCAAGGGATGCACATTTTCTTCAACGCCGTGGCTCACTGCGGCAACGACGGCC : 806602 202 : hePheAlaValLeuValLeuHisLeuCysGlyGlnLeuIleIleLeuGlyAspGluLe : 220 !!||| ! !|||..!:!!|||||||||||||||!!! !|||||| :!!:! euPhePheSerLeuThrMetHisLeuCysGlyGlnPheGluIleLeu------LysMe 806603 : TCTTCTTCAGCCTGACGATGCATCTGTGCGGTCAGTTTGAAATTCTG------AAGAT : 806653 221 : uAsnSerLeuAlaPheGlnLysAspThrGluGlyIleLysGluAspIleAlaLysIle : 239 !||| ! !! !.!!:!! !!:.!! !.! !::!:!! |||!.! :!! tAsnLeuAlaGluIleGluPheGluAlaIleAlaCysArgLysArgIleGlyValLeu 806654 : GAATCTGGCGGAGATCGAGTTCGAGGCGATCGCTTGTCGGAAGCGAATCGGCGTTCTC : 806710 240 : ValLysArgHisTyrGluLeuAsnLysTyrAlaGluThrIleGluThrThrPheAsnL : 259 ||||||||||||! !:!!||| !! .!!.!. !:!!||| !!:!|||!:!! ValLysArgHisCysLysLeuAlaValLeuThrAsnAspLeuGluGlnSerPheSerM 806711 : GTGAAACGACACTGCAAACTGGCGGTGTTGACCAACGATCTCGAGCAGAGCTTCAGTA : 806770 260 : ysMetPheLeuAlaGlnIleIleAlaCysIleValGlnPheCysLeuGlnGlyTyrGl : 278 !!!:.!!|||!.!|||:!!!!: ! !! :!!! !.!!|||:!!:!!||| ! .. etIleIleLeuValGlnLeuMetMetSerAlaLeuLeuIleCysValGluGlyGluSe 806771 : TGATTATTCTGGTGCAACTCATGATGAGTGCGTTGCTAATTTGCGTAGAAGGTGAGTC : 806827 279 : nIleIleSerIleLeu{I} >>>> Target Intron 1 >>>> {le}AspLys : 286 !:!:.!!.!!! !:!!{|} 428 bp {||}! ! ! rLeuPheGlyLysVal{I}++ -+{le}AlaLeu 806828 : GTTGTTCGGAAAAGTA{A}gt.........................gg{TC}GCTCTG : 807279 287 : SerLeuGluLeuProTyrPheGlnLeuIlePheMetValMetTyrIleSerTyrMetS : 306 ||| !:!! ! ! ! !|||! !.!.|||:!! :!:!!!! :!! SerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuMetValThrLeuLeu- 807280 : AGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGATGGTGACTTTGCTG- : 807339 307 : erLeuAspLeuTyrIleTyrCysTyrValAlaGluLysLeuArgGlyLysSerIleGl : 325 :!!.!.||||||:!!|||..!|||!.!!.!.!.! !|||..!..!::!!!! !|| --IleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGl 807340 : --ATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGA : 807393 326 : uIleAlaAspAlaAlaTyrAsnCysLysTrpTyrAsnPheGlnLysLysGluValSer : 344 |||||||.!.|||||||||:!!! ! ||||||..!! !!!. ! ! ! !!.!!!! uIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArg 807394 : AATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGA : 807450 345 : AspLeuIleLeuIleMetLysArgAlaGlnTyrProLeuAspIleThrAlaGlyLysP : 364 ||||||:!!||||||!!: ! |||!.!.!.! |||! ! !|||||||||||||||| AspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysP 807451 : GATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAAT : 807510 365 : heCysSerLeuSerLeuArgLeuPheAlaIleIleGlyLysThrSerLeuGlyTyrLe : 383 || ! !!:!!!:!||| ! !||| ! ||| !|||.!!||| !..!||||| heValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLe 807511 : TCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCT : 807567 384 : uSerMetLeu : 386 ||||:!::!! uSerValMet 807568 : GTCTGTAATG : 807578 vulgar: NvOr32NTE 181 386 . KQ414940.1 806544 807578 + 215 M 35 105 G 2 0 M 65 195 S 0 1 5 0 2 I 0 424 3 0 2 S 1 2 M 21 63 G 1 0 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806545 807578 215 + . gene_id 1 ; sequence NvOr32NTE ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 806545 806845 . + . KQ414940.1 exonerate:protein2genome:local exon 806545 806845 . + . insertions 0 ; deletions 2 KQ414940.1 exonerate:protein2genome:local splice5 806846 806847 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806846 807273 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 807272 807273 . + . intron_id 0 ; splice_site "GG" KQ414940.1 exonerate:protein2genome:local cds 807274 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807274 807578 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 806545 807578 215 + . alignment_id 1 ; Query NvOr32NTE ; Align 806545 182 105 ; Align 806650 219 195 ; Align 807276 285 63 ; Align 807339 307 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr31 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 196 Query range: 200 -> 397 Target range: 806580 -> 807593 201 : SerTyrSerGlyLeuTyrGlyLeuPheValGlyLeuMetLeuHisLeuCysGlyGlnP : 220 :!!:!!!!!||| ! !!||||||||| !!.!!|||! !:!!|||||||||||||||| AlaHisCysGlyAsnAspGlyLeuPhePheSerLeuThrMetHisLeuCysGlyGlnP 806581 : GCTCACTGCGGCAACGACGGCCTCTTCTTCAGCCTGACGATGCATCTGTGCGGTCAGT : 806638 221 : heAlaAsnLeuArgValLysMetAspLysValAlaLysGlnAlaAspSerAlaLysPh : 239 ||! !! !|||!:!:!!!!.:!!! :!!:!!! ! :!!||| !:!!..! heGluIleLeuLysMetAsnLeuAlaGluIleGluPheGluAlaIleAlaCys----- 806639 : TTGAAATTCTGAAGATGAATCTGGCGGAGATCGAGTTCGAGGCGATCGCTTGT----- : 806692 240 : eArgGlnAsnLeuThrAlaIleIleIleArgHisGlnPheLeuPheArgPheSerGln : 258 |||:!!...:!! !!.!:!!:!:! !|||||| ||| !!!.!!!.!. -ArgLysArgIleGlyValLeuValLysArgHisCysLysLeuAlaValLeuThrAsn 806693 : -CGGAAGCGAATCGGCGTTCTCGTGAAACGACACTGCAAACTGGCGGTGTTGACCAAC : 806746 259 : IleIleGluLysIlePheAsnValIlePheLeuGlyGluIleLeuGlyCysThrIleG : 278 !:!!|||:!!! !|||!:!:!!|||.!!|||! !:!!:!!:!! ! !!.!!:!:! AspLeuGluGlnSerPheSerMetIleIleLeuValGlnLeuMetMetSerAlaLeuL 806747 : GATCTCGAGCAGAGCTTCAGTATGATTATTCTGGTGCAACTCATGATGAGTGCGTTGC : 806806 279 : lnPheCysLeuGln{G} >>>> Target Intron 1 >>>> {ly}Phe<->Ph : 285 !.!!|||:!!:!!{|} 437 bp {||}||| || euIleCysValGlu{G}++ ++{ly}PheValPh 806807 : TAATTTGCGTAGAA{G}gt.........................ag{GT}TTCGTCTT : 807267 286 : eLeuCysThrLeuSerThrGluAspValGlyLeuLeuValMetTyrIlePhePheMet : 304 |||| !.!!|||||||||:!!||| !! ! ! !:!!! ! !.!! !!.!.||| eLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuMet 807268 : CCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGATG : 807324 305 : ValPhePheIleGlyHisIleGlySerHisLeuPheIleCysCysTyrValSerGluA : 324 ||| !!!.:!: ! !!!.|||!:!:!!! !..!|||!.!.!!.!.! ValThrLeuLeu------------IleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnT 807325 : GTGACTTTGCTG------------ATTCAGCTGTACCTTTACGCCTACGCGGGCAACA : 807372 325 : rgLeuGlnAspGluSerValSerIleAlaAsnAlaAlaTyrLysCysGlnTrpTyrHi : 343 !|||:!!.....!!!!! !..!||||||.!.||||||||| ! ! !! ||||||!. hrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrAr 807373 : CACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCG : 807429 344 : sLeuProAlaLysAspValMetLeuLeuValMetValIleAsnArgAlaLysAspPro : 362 !! !! !!.! ! ! !.!! !|||:!!:!!:!!|||:!!|||!.!!!....||| gCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerPro 807430 : TTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCT : 807486 363 : IleGlnIleThrAlaGlyLysPheCysValPheSerLeuSerLeuLeuAlaGlnIleP : 382 !!::|||||||||||||||||| ! !.!.!:!|||! ! !!!! !:!!|||. TyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleL 807487 : TATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATAC : 807546 383 : heLysThrSerGlyGlyTyrLeuSerMetLeuLeuAlaValArgAsp : 397 !.|||.!!||||||..!|||||||||:!::!! !!.!:!!! !||| euLysAlaSerGlySerTyrLeuSerValMetLysValMetMetAsp 807547 : TGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: NvOr31 200 397 . KQ414940.1 806580 807593 + 196 M 37 111 G 2 0 M 43 129 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 1 3 G 0 3 M 24 72 G 4 0 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806581 807593 196 + . gene_id 1 ; sequence NvOr31 ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 806581 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806581 806821 . + . insertions 0 ; deletions 2 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807258 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807593 . + . insertions 3 ; deletions 4 KQ414940.1 exonerate:protein2genome:local similarity 806581 807593 196 + . alignment_id 1 ; Query NvOr31 ; Align 806581 201 111 ; Align 806692 240 129 ; Align 807261 284 3 ; Align 807267 285 72 ; Align 807339 313 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr28 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 196 Query range: 200 -> 399 Target range: 806580 -> 807593 201 : AlaTyrSerGlyIleTyrCysLeuPheValAlaLeuMetLeuHisLeuCysGlyGlnP : 220 |||:!!!!!|||! ! !! !!|||||| !!::!|||! !:!!|||||||||||||||| AlaHisCysGlyAsnAspGlyLeuPhePheSerLeuThrMetHisLeuCysGlyGlnP 806581 : GCTCACTGCGGCAACGACGGCCTCTTCTTCAGCCTGACGATGCATCTGTGCGGTCAGT : 806638 221 : heSerAsnLeuArgLysLysLeuArgArgValValThrAsnGluAspAspLysArgLy : 239 ||..!! !|||!:!! !!!.||| !..!:!!! ! !.!.! ! !! ! ||||| heGluIleLeuLysMetAsnLeuAlaGluIleGluPheGluAlaIleAlaCysArgLy 806639 : TTGAAATTCTGAAGATGAATCTGGCGGAGATCGAGTTCGAGGCGATCGCTTGTCGGAA : 806695 240 : sPheValGluLysLeuAlaGluIleValLysArgHisGluAsnLeuAsnAsnPheAla : 258 | ::!:!!!.!! :!!|||||||||||| !!.||| !!..!! s---------ArgIleGlyValLeuValLysArgHisCysLysLeuAlaValLeuThr 806696 : G---------CGAATCGGCGTTCTCGTGAAACGACACTGCAAACTGGCGGTGTTGACC : 806743 259 : ArgValIleGluLysIlePheAsnLeuMetPheLeuAlaGluIleLeuGlyCysThrI : 278 !.!! !:!!|||:!!! !|||!:!:!!!!:.!!|||!.!:!!:!!:!! ! !!.!!: AsnAspLeuGluGlnSerPheSerMetIleIleLeuValGlnLeuMetMetSerAlaL 806744 : AACGATCTCGAGCAGAGCTTCAGTATGATTATTCTGGTGCAACTCATGATGAGTGCGT : 806803 279 : leGlnPheCysMetGln{G} >>>> Target Intron 1 >>>> {ly}PhePh : 286 !:! !.!!|||:!::!!{|} 437 bp {||}||| ! euLeuIleCysValGlu{G}++ ++{ly}PheVa 806804 : TGCTAATTTGCGTAGAA{G}gt.........................ag{GT}TTCGT : 807264 287 : eLeuLeuThrLeuSerSerLysGluGlyMetGlyLeuProIleLeuHisIleLeuPhe : 305 !!!!|||..! ! !|||! !:!!! !! ! ! ! !!:!: ! !.!!:!!.!. lPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValLeu 807265 : CTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTG : 807321 306 : MetValIleTyrValLeuHisIleGlyThrHisLeuPheIleCysCysTyrValSerG : 325 ||||||! !! :!!:!! !!.|||!:!:!!! !..!|||!.!.!!. MetValThrLeuLeuIle------------GlnLeuTyrLeuTyrAlaTyrAlaGlyA 807322 : ATGGTGACTTTGCTGATT------------CAGCTGTACCTTTACGCCTACGCGGGCA : 807369 326 : luLysLeuGlnAspGluSerValSerIleValArgAlaAlaTyrAsnCysGluTrpTy : 344 !.! !|||:!!.....!!!!! !..!|||!.!!:!|||||||||:!!! ! ||||| snThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTy 807370 : ACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTA : 807426 345 : rAsnLeuSerAlaLysAspAlaMetLeuLeuValMetIleMetAsnArgAlaLysLys : 363 |..!! ! !!.! ! ! |||! !|||:!!:!!|||!!::!!|||!.!!!...! rArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSer 807427 : CCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCG : 807483 364 : ProLeuArgIleThrAlaGlyLysPheCysAlaPheSerLeuSerLeuTyrAlaGlnI : 383 |||! !||||||||||||||||||||| ! !!.!.!:!|||! ! !!:! !:!!| ProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluI 807484 : CCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGA : 807543 384 : lePheLysThrSerGlyGlyTyrLeuSerMetLeuLeuAlaValArgAsp : 399 ||.!.|||.!!||||||..!|||||||||:!::!! !!.!:!!! !||| leLeuLysAlaSerGlySerTyrLeuSerValMetLysValMetMetAsp 807544 : TACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: NvOr28 200 399 . KQ414940.1 806580 807593 + 196 M 39 117 G 3 0 M 41 123 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 27 81 G 4 0 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806581 807593 196 + . gene_id 1 ; sequence NvOr28 ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 806581 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806581 806821 . + . insertions 0 ; deletions 3 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807258 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807593 . + . insertions 0 ; deletions 4 KQ414940.1 exonerate:protein2genome:local similarity 806581 807593 196 + . alignment_id 1 ; Query NvOr28 ; Align 806581 201 117 ; Align 806698 243 123 ; Align 807261 285 81 ; Align 807342 316 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr26 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 322 -> 406 Target range: 807341 -> 807593 323 : HisValPheIleCysCysPheValAlaAspLysLeuArgGluGluSerLeuLeuIleC : 342 !!.:!!!:!:!!! !..!!:!!.!!.!:!!! !|||..!..!..!!!! ! !|||. GlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluIleA 807342 : CAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAATTG : 807399 343 : ysAsnSerValTyrAsnTyrGlnTrpTyrLysLeuSerAlaGlnAspAlaLysMetLe : 361 ...!.:!!!.!|||:!!! !! ||||||:::! ! !!.!!!.! |||!:! || laGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAspLe 807400 : CACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCT : 807456 362 : uIlePheValMetHisArgGlyAspArgProLeuAlaMetThrAlaGlyLysPheCys : 380 |:!!!!.:!!!!:|||||||||:!! !|||! ! !!!:||||||||||||||| ! uLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheVal 807457 : CCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCGTC : 807513 381 : AlaPheSerLeuGlnLeuTyrAlaGlnIleLeuLysThrSerGlyGlyTyrLeuSerM : 400 !!.!.!:!||| !!:! !:!!|||||||||.!!||||||..!|||||||||: ProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSerV 807514 : CCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTG : 807573 401 : etLeuLeuAlaLeuLysAsp : 406 !::!! !!.!:!!! !||| alMetLysValMetMetAsp 807574 : TAATGAAGGTAATGATGGAC : 807593 vulgar: NvOr26 322 406 . KQ414940.1 807341 807593 + 144 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807342 807593 144 + . gene_id 1 ; sequence NvOr26 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807342 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807342 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807342 807593 144 + . alignment_id 1 ; Query NvOr26 ; Align 807342 323 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr29 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 200 Query range: 170 -> 400 Target range: 806484 -> 807593 171 : PhePheAspSerTyrPheProTyrAspTyrThrProSerProValTyrGluIleThrP : 190 |||...! !!!!:!!! ! !!:!! ! ! !|||! !! ! !:!!! !..!! PheLeuAlaThrHisCysValPheGlyProLeuProLeuGlnHisHisValCysValL 806485 : ttcttgGCCACGCACTGCGTGTTCGGCCCTTTACCGTTGCAGCATCACGTCTGCGTGT : 806542 191 : heValIleGlnTyrIleAlaThrMetLeuAlaThrPheGlyTyrSerGlyLeuTyrSe : 209 !.:!!:!:||| !!: !! !.!.!!! !.!! ! !.!:!!!!!||| ! !!.! euLeuLeuGlnGlyMetHisIlePhePheAsnAlaValAlaHisCysGlyAsnAspGl 806543 : TACTGCTGCAAGGGATGCACATTTTCTTCAACGCCGTGGCTCACTGCGGCAACGACGG : 806599 210 : rLeuPheValAlaLeuMetLeuHisLeuCysGlyGlnPheAlaAsnLeuArgAspArg : 228 !|||||| !!::!|||! !:!!||||||||||||||||||! !! !|||!:! !.! yLeuPhePheSerLeuThrMetHisLeuCysGlyGlnPheGluIleLeuLysMetAsn 806600 : CCTCTTCTTCAGCCTGACGATGCATCTGTGCGGTCAGTTTGAAATTCTGAAGATGAAT : 806656 229 : LeuTyrThrValThrGlnLysLysAlaGlyValThrPheGlnGlnArgLeuGlyTyrI : 248 ||| !:!! :!! ! !!.!:!!.!!! !!:!:!!|||:!!||| !: LeuAlaGluIle------GluPheGluAlaIleAlaCysArgLysArgIleGlyValL 806657 : CTGGCGGAGATC------GAGTTCGAGGCGATCGCTTGTCGGAAGCGAATCGGCGTTC : 806710 249 : leValMetArgHisGlnCysLeuTyrAsnPheAlaGlnValValGluLysMetPheAs : 267 !!|||! |||||| ||| !!..!!.!.! !:!!|||:!!! |||!: euValLysArgHisCysLysLeuAlaValLeuThrAsnAspLeuGluGlnSerPheSe 806711 : TCGTGAAACGACACTGCAAACTGGCGGTGTTGACCAACGATCTCGAGCAGAGCTTCAG : 806767 268 : nLeuMetPheLeuAlaGluIleLeuGlyCysThrIleGlnPheCysMetGln{G} > : 285 !:!!!!:.!!|||!.!:!!:!!:!! ! !!.!!:!:! !.!!|||:!::!!{|} rMetIleIleLeuValGlnLeuMetMetSerAlaLeuLeuIleCysValGlu{G}++ 806768 : TATGATTATTCTGGTGCAACTCATGATGAGTGCGTTGCTAATTTGCGTAGAA{G}gt. : 806824 286 : >>> Target Intron 1 >>>> {ly}PhePheLeuLeuThrLeuSerSerLysG : 295 437 bp {||}||| !!!!!|||..! ! !|||! !: ++{ly}PheValPheLeuValAlaLeuSerThrL 806825 : ........................ag{GT}TTCGTCTTCCTGGTCGCTCTGAGCACGA : 807288 296 : luGlyMetGlyLeuProIleLeuHisIleMetPheMetValValTyrValAlaHisIl : 314 !!! !! ! ! ! !!:!: ! !.!!:!:.!.||||||..!! :!! ysAspAsnValAlaAlaLeuArgSerPheValLeuMetValThrLeuLeu-------- 807289 : AGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGATGGTGACTTTGCTG-------- : 807339 315 : eGlyThrHisLeuPheIleCysCysTyrValAlaGluLysLeuGlnAspGluSerVal : 333 ! !!!.|||!:!:!!! !..!|||!.!!.!.!.! !|||:!!.....!!!!! ! ----IleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGlu 807340 : ----ATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAA : 807390 334 : SerIleAlaLysAlaAlaTyrGluCysGlnTrpTyrHisLeuSerProLysAspValM : 353 ..!||||||:!!|||||||||!!:! !! ||||||!.!! ! ! ! ! ! !.!! GluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaA 807391 : GAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCA : 807450 354 : etLeuLeuIleMetIleIleAsnArgAlaLysAspProIleGluMetThrAlaGlyLy : 372 !|||:!!:!!||||||:!!|||!.!!!....||| !...!!:||||||||||| rgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLy 807451 : GAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAA : 807507 373 : sPheCysThrPheSerLeuSerLeuTyrAlaGlnIlePheLysAsnSerGlyGlyTyr : 391 |||| ! !!.!.!:!|||! ! !!:! !:!!|||.!.||| !||||||..!||| sPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyr 807508 : ATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTAT : 807564 392 : LeuSerMetLeuLeuAlaMetArgAsp : 400 ||||||:!::!! !!.!|||! !||| LeuSerValMetLysValMetMetAsp 807565 : CTGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: NvOr29 170 400 . KQ414940.1 806484 807593 + 200 M 62 186 G 2 0 M 50 150 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 26 78 G 4 0 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806485 807593 200 + . gene_id 1 ; sequence NvOr29 ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 806485 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806485 806821 . + . insertions 0 ; deletions 2 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807258 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807593 . + . insertions 0 ; deletions 4 KQ414940.1 exonerate:protein2genome:local similarity 806485 807593 200 + . alignment_id 1 ; Query NvOr29 ; Align 806485 171 186 ; Align 806671 235 150 ; Align 807261 286 78 ; Align 807339 316 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr25 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 316 -> 400 Target range: 807341 -> 807593 317 : HisValPheIleCysCysTyrValAlaAspLysLeuArgAspGluSerLeuSerIleC : 336 !!.:!!!:!:!!! !..!|||!.!!.!:!!! !|||..!.....!!!! !..!|||. GlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluIleA 807342 : CAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAATTG : 807399 337 : ysAspLeuAlaTyrAsnTyrGluTrpTyrArgLeuProAlaArgAspAlaArgLeuLe : 355 ...!. !||||||:!!! ! |||||||||! !! !!.!!.!! |||||| !|| laGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAspLe 807400 : CACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCT : 807456 356 : uLeuPheIleMetLeuArgAlaGluArgProLeuGluValThrAlaGlyLysPheCys : 374 ||||!!.|||!!:! !|||!.!.!. !|||! !...:!!||||||||||||||| ! uLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheVal 807457 : CCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCGTC : 807513 375 : AlaPheSerLeuArgLeuTyrAlaGlnIleLeuLysThrSerGlyGlyTyrLeuSerM : 394 !!.!.!:!||| ! !!:! !:!!|||||||||.!!||||||..!|||||||||: ProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSerV 807514 : CCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTG : 807573 395 : etLeuLeuAlaValLysAsp : 400 !::!! !!.!:!!! !||| alMetLysValMetMetAsp 807574 : TAATGAAGGTAATGATGGAC : 807593 vulgar: NvOr25 316 400 . KQ414940.1 807341 807593 + 143 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807342 807593 143 + . gene_id 1 ; sequence NvOr25 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807342 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807342 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807342 807593 143 + . alignment_id 1 ; Query NvOr25 ; Align 807342 317 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr23 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 332 -> 418 Target range: 807335 -> 807593 333 : LeuValSerIlePheThrTyrCysPheValAlaGluGlnLeuArgThrGlnSerAsnG : 352 |||:!!..!:!:!:! !|||..!!:!!.!!.!.!. !|||..!:!!!:!!!!.!.: LeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluG 807336 : CTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAG : 807393 353 : lnLeuPheArgSerIlePheGlnIleArgTrpTyrAspLeuThrProLysAspSerAr : 371 !!:!! !:!:!! !!:!.!. !! !|||||| !! ! ! ! ! ! :!!|| luIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaAr 807394 : AAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAG : 807450 372 : gLeuLeuIleIleIleMetValGlnThrLysLysProIleGluIleThrValGlyLys : 390 | !|||:!!:!:|||!!: !!:! !!!...!||| !...||||||!.!|||||| gAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLys 807451 : AGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAA : 807507 391 : PheValProPheSerLeuAspTyrPheCysSerValLeuLysThrSerAlaGlyTyrL : 410 |||||||||.!.!:!||| ! !||| ..!:!!||||||.!!|||!.!..!|||| PheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrL 807508 : TTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATC : 807567 411 : euSerValLeuLeuSerMetLysAsp : 418 ||||||||:!! ! !|||! !||| euSerValMetLysValMetMetAsp 807568 : TGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: NvOr23 332 418 . KQ414940.1 807335 807593 + 137 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807336 807593 137 + . gene_id 1 ; sequence NvOr23 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807336 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807336 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807336 807593 137 + . alignment_id 1 ; Query NvOr23 ; Align 807336 333 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr24 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 321 -> 411 Target range: 807338 -> 807608 322 : PheHisLeuPheAlaCysCysTyrAlaAlaGluArgLeuGlnAsnGluSerLeuSerI : 341 .!!!!.|||!:! !! !..!||||||!.!.!.! !|||:!!:::..!!!! !..!| IleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluI 807339 : ATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAA : 807396 342 : lePheGluAlaAlaTyrSerCysGluTrpTyrAsnLeuSerProGlnAspAlaLysMe : 360 || :!!|||||||||..!! ! ||||||..!! ! ! !!!.! |||!:! leAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAs 807397 : TTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGA : 807453 361 : tLeuLeuPheIleMetGlnArgThrLysThrProLeuArgValThrAlaGlyLysLeu : 379 ||||||!!.|||!!:!!.||| !!!.:!!|||! !|||:!!||||||||||||!!! pLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPhe 807454 : TCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTC : 807510 380 : CysValPheGlyLeuGluLeuPheAlaLysIleLeuLysThrAlaGlyGlyTyrLeuS : 399 ! !.!...!||| !||| !:!!|||||||||.!!:!!|||..!||||||| ValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuS 807511 : GTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGT : 807570 400 : erIleLeuLeuAlaMetArgAspArgLeuValIleAsp : 411 ||:!!:!! !!.!|||! !||| !! !! !:!:||| erValMetLysValMetMetAspAla***GluLeuAsp 807571 : CTGTAATGAAGGTAATGATGGACGCATGAGAATTGGAC : 807608 vulgar: NvOr24 321 411 . KQ414940.1 807338 807608 + 152 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807339 807608 152 + . gene_id 1 ; sequence NvOr24 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807339 807608 . + . KQ414940.1 exonerate:protein2genome:local exon 807339 807608 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807339 807608 152 + . alignment_id 1 ; Query NvOr24 ; Align 807339 322 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr32NTE Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 321 -> 380 Target range: 4381 -> 4204 322 : LysSerIleGluIleAlaAspAlaAlaTyrAsnCysLysTrpTyrAsnPheGlnLysLysGl : 342 :!!!!!:!::!!:!!!.!!!:!.!!.!|||! ! |||||| !!.!.! !:!!!:!.. GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 343 : uValSerAspLeuIleLeuIleMetLysArgAlaGlnTyrProLeuAspIleThrAlaGlyL : 363 !:!! !|||||||||||||||!!:! !|||:!!.!. !:!!!!:||||||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 364 : ysPheCysSerLeuSerLeuArgLeuPheAlaIleIleGlyLysThrSerLeu : 380 ||... :::|||||| ! !|||!.! !:!!.!!:!!|||!:!||| ysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsnLeu 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAATCTT : 4205 vulgar: NvOr32NTE 321 380 . LHQN01027980.1 4381 4204 - 103 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4205 4381 103 - . gene_id 1 ; sequence NvOr32NTE ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 4205 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4205 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4205 4381 103 - . alignment_id 1 ; Query NvOr32NTE ; Align 4382 322 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr31 Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 300 -> 385 Target range: 4554 -> 4207 301 : IlePhePheMetValPhePheIleGlyHisIleGlySerHisLeuPheIleCysCysTyrVa : 321 :!!||| :!! ! :!!! ! !:!!! !|||::: |||::: ||||||:! LeuPheThrTyrIleValThrLeuValAlaValValSerAsnThrPheLeuIleCysTyrIl 4554 : TTATTCACGTACATTGTAACACTCGTTGCTGTTGTTtctaatacatttttaatctGTTATAT : 4494 322 : lSerGluArgLeuGlnAspGlu >>>> Target Intron 1 >>>> SerValSerIl : 332 !|||!!:|||||| !!!::!! 92 bp !!!:!!!.!:! eSerAspArgLeuThrGluGln++ ++CysLeuLysVa 4493 : CAGCGACAGGTTGACAGAACAGgt.........................agTGCTTGAAAGT : 4369 333 : eAlaAsnAlaAlaTyrLysCysGlnTrpTyrHisLeuProAlaLysAspValMetLeuLeuV : 353 !!.!.!.!.!!.!|||! ! .!.||||||:!!|||||| !!:! :!!:!: !|||: lGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgArgIleLeuAspLeuI 4368 : TGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAGAATCCTCGATTTAA : 4306 354 : alMetValIleAsnArgAlaLysAspProIleGlnIleThrAlaGlyLysPheCysValPhe : 373 !!:!!:!!|||!..|||:!!!!.! !:!!:!!|||||||||||||||... ... leLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyLysIlePheHisMet 4305 : TTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaaaaatattccatatg : 4246 374 : SerLeuSerLeuLeuAlaGlnIlePheLysThrSer : 385 ||||||! ! !!!!!.!.!.:!! !:!!|||!:! SerLeuTyrThrPheGlyAspValSerGluThrAsn 4245 : TCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 4208 vulgar: NvOr31 300 385 . LHQN01027980.1 4554 4207 - 116 M 28 84 5 0 2 I 0 88 3 0 2 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4208 4554 116 - . gene_id 1 ; sequence NvOr31 ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4471 4554 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4471 4554 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4469 4470 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4379 4470 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4379 4380 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4208 4378 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4208 4378 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4208 4554 116 - . alignment_id 1 ; Query NvOr31 ; Align 4555 301 84 ; Align 4379 329 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr18NTE Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 321 -> 401 Target range: 797 -> 1206 322 : TyrValAlaGluValLeuArgThrGluSerMetGluIleGlyAsnAlaAlaTyrGlnCysAs : 342 |||::: !!!!||| ! !!|||... !|||||||||.!!||||||:!!! ! TyrLeuLysCysCysPheArgHis***SerGlnLeuIleGlyAsnThrAlaTyrGluPheLe 798 : tatttaaaatgttGCTTTCGTCATTAGAGCCAACTAATCGGCAATACGGCGTATGAATTTCT : 858 343 : nTrpTyrThrLeuProProSerGluAlaLysCysLeuThrLeuIleMetIleArgAlaLysG : 363 !|||||| !|||! ! !!!!!|||::!:!! !|||! !! !:!!!!::!:|||:!!:!!: uTrpTyrAspLeuArgSerThrGluSerGlnLeuLeuIleProValIleLeuArgSerGlnL 859 : TTGGTACGATTTACGTTCAACTGAAAGCCAACTTCTAATACCTGTAATATTGAGGTCTCAAA : 921 364 : lnProPheGluIleThrAlaGlyLysPheAlaAlaPheSerLeuGluLeuTyrCysArg > : 383 !! !||| !...||| |||||||||::::::..!||||||||| !!:! ! ysGlyPheThrPheThrPheGlyLysPheSerSerLeuSerLeuGluSerPheThrAla++ 922 : AGGGTTTCACATttacttttggaaaattttcaagtctCTCCTTGGAAAGCTTTACGGCCgt. : 983 384 : >>> Target Intron 1 >>>> IleLeuLysSerSerGlyGlyTyrLeuSerMetLeu : 394 169 bp |||:!!||| !|||!.!..!|||:!!|||:!:||| ++IleMetLysValSerAlaSerTyrIleSerValLeu 984 : ........................agATCATGAAAGTCTCAGCATCATATATATCAGTACTT : 1183 395 : LeuAlaValLysAspArgLeu : 401 ||||||||| ! |||:!! LeuAlaValTyr***ArgIle 1184 : CTTGCAGTGTATTGAAGAATC : 1206 vulgar: NvOr18NTE 321 401 . LHQN01050112.1 797 1206 + 131 M 61 183 5 0 2 I 0 165 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 798 1206 131 + . gene_id 1 ; sequence NvOr18NTE ; gene_orientation + LHQN01050112.1 exonerate:protein2genome:local cds 798 980 . + . LHQN01050112.1 exonerate:protein2genome:local exon 798 980 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local splice5 981 982 . + . intron_id 1 ; splice_site "GT" LHQN01050112.1 exonerate:protein2genome:local intron 981 1149 . + . intron_id 1 LHQN01050112.1 exonerate:protein2genome:local splice3 1148 1149 . + . intron_id 0 ; splice_site "AG" LHQN01050112.1 exonerate:protein2genome:local cds 1150 1206 . + . LHQN01050112.1 exonerate:protein2genome:local exon 1150 1206 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 798 1206 131 + . alignment_id 1 ; Query NvOr18NTE ; Align 798 322 183 ; Align 1150 383 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr17 Target: LHQN01050112.1 Habropoda laboriosa contig50112, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 327 -> 389 Target range: 797 -> 983 328 : TyrValAlaGluValLeuArgThrGluSerMetGluValGlyAsnAlaAlaTyrGluSerAsnT : 349 |||::: !!!!||| ! !!|||... !:!!||||||.!!|||||||||! ! !| TyrLeuLysCysCysPheArgHis***SerGlnLeuIleGlyAsnThrAlaTyrGluPheLeuT 798 : tatttaaaatgttGCTTTCGTCATTAGAGCCAACTAATCGGCAATACGGCGTATGAATTTCTTT : 861 350 : rpTyrAspLeuProSerCysGluThrLysLeuLeuMetLeuValIleIleArgAlaLysLysPr : 370 |||||||||||! !||| !|||!:!:!!||||||!!:! !||||||:!:|||:!!:!!||| rpTyrAspLeuArgSerThrGluSerGlnLeuLeuIleProValIleLeuArgSerGlnLysGl 862 : GGTACGATTTACGTTCAACTGAAAGCCAACTTCTAATACCTGTAATATTGAGGTCTCAAAAGGG : 924 371 : oPheLysIleThrAlaGlyLysPheAlaAlaPheSerLeuGlyLeuTyrCysSerIle : 389 !|||! !...||| |||||||||::::::..!||||||! ! !!:! :!!:!! yPheThrPheThrPheGlyLysPheSerSerLeuSerLeuGluSerPheThrAlaVal 925 : TTTCACATttacttttggaaaattttcaagtctCTCCTTGGAAAGCTTTACGGCCGTA : 983 vulgar: NvOr17 327 389 . LHQN01050112.1 797 983 + 127 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050112.1 exonerate:protein2genome:local gene 798 983 127 + . gene_id 1 ; sequence NvOr17 ; gene_orientation . LHQN01050112.1 exonerate:protein2genome:local cds 798 983 . + . LHQN01050112.1 exonerate:protein2genome:local exon 798 983 . + . insertions 0 ; deletions 0 LHQN01050112.1 exonerate:protein2genome:local similarity 798 983 127 + . alignment_id 1 ; Query NvOr17 ; Align 798 328 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr37 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 10 -> 99 Target range: 203450 -> 203717 11 : GluPheAspTrpAlaLeuGlyIleAsnArgValSerLeuArgLeuLeuGlyIleTrpP : 30 !!:|||!!:||||||:!! !!!!:|||||| !|||||||||:!!:!!|||:!!||| AspPheGluTrpAlaValArgMetAsnArgSerSerLeuArgIleIleGlyLeuTrpP 203451 : GACTTCGAATGGGCAGTTCGGATGAATCGCTCTAGTTTGAGAATAATTGGTCTTTGGT : 203508 31 : roAlaAspGlnAspGluSerSerLysSerLeuLeuThrValSerArgIleProLeuMe : 49 !! !!!:.!. !!! ...::: ......||| |||! ! ! !!! heGluGluAspHisAlaGlyThrMetLysPheLeuArgLysLeuArgAsnMetGlyIl 203509 : TTGAAGAAGATCACGCTggaacgatgaaatttttaagaaaattacgcAATATGGGGAT : 203565 50 : tValLeuValIlePheGlyGlyLeuPheLeuProGlnMetTrpAlaLeuAlaLeuIle : 68 :||||||:!!|||.!! !! !! ! ! |||||| :!:!:::!!||| ! ! ! eValLeuIleIleLeuPheValCysValLeuProCysLeuTyrSerLeuIleLysGln 203566 : CGTGCTGATAATCCTCTTCGTTTGTGTACTTCCTTGCCTCTACTCTTTGATCAAACAA : 203622 69 : IleGluGlnLeuProLeuAlaIleAspAsnLeuMetThrSerCysProAlaPheThrS : 88 !!!:...||| ! !!.!|||||||||||| !!!! !||| ! ! !! CysAspSerLeuMetAlaValIleAspAsnLeuSerTyrThrIleProLeuThrIleT 203623 : TGTGACAGTTTAATGGCGGTGATAGATAATCTTTCATATACTATTCCTTTGACAATAA : 203682 89 : erCysIleLysLeuPhePheIleTrpArgSerLys : 99 !! !!:|||! !.!! !!|||! !!!!!.!||| hrLeuMetLysTyrIleValIleLeuSerLysLys 203683 : CACTGATGAAGTATATCGTTATATTGAGTAAAAag : 203717 vulgar: NvOr37 10 99 . KQ414617.1 203450 203717 + 111 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203451 203717 111 + . gene_id 1 ; sequence NvOr37 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203451 203717 . + . KQ414617.1 exonerate:protein2genome:local exon 203451 203717 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203451 203717 111 + . alignment_id 1 ; Query NvOr37 ; Align 203451 11 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr33PSE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 181 Query range: 4 -> 223 Target range: 203450 -> 204218 5 : AspPheAspPheValIleSerTrpAsnArgArgIleLeuAsnIleValGlyIleTrpP : 24 ||||||!!:!::!.!:!! !! !|||||| !! !|||!..|||:!!|||:!!||| AspPheGluTrpAlaValArgMetAsnArgSerSerLeuArgIleIleGlyLeuTrpP 203451 : GACTTCGAATGGGCAGTTCGGATGAATCGCTCTAGTTTGAGAATAATTGGTCTTTGGT : 203508 25 : roGluProGluThrLysAsnSerLeu<-><->PheSerLysCysAsnPheValTrpAl : 41 !||| !!!: ! ...:::::: ... ||| ... !:!! !! heGluGluAspHisAlaGlyThrMetLysPheLeuArgLysLeuArgAsnMetGlyIl 203509 : TTGAAGAAGATCACGCTggaacgatgaaatttttaagaaaattacgcAATATGGGGAT : 203565 42 : aAlaPheLeuIlePheTyrPheValSerAlaProGlnThrAlaAspLeuPheIleIle : 60 !!.!.!.:!!|||.!!!:! !! ! ! !||| ! !..!|||.!!! ! ! eValLeuIleIleLeuPheValCysValLeuProCysLeuTyrSerLeuIleLysGln 203566 : CGTGCTGATAATCCTCTTCGTTTGTGTACTTCCTTGCCTCTACTCTTTGATCAAACAA : 203622 61 : CysSerAsnMetAspLeuValValGluAsnLeuSerThrAlaAsnIleAlaIleThrT : 80 |||..!!:!:!: !|||:!!!!:||||||||| !!.!||| !!:!:|||! CysAspSerLeuMetAlaValIleAspAsnLeuSer---TyrThrIleProLeuThrI 203623 : TGTGACAGTTTAATGGCGGTGATAGATAATCTTTCA---TATACTATTCCTTTGACAA : 203679 81 : hrThrLeuLeuLysLeuPheValPheTrpPheAsnArgGlu{A} >>>> Target : 94 !||||||:!!|||! !.!!|||.!.! ! !!!.!::|||{!} 93 leThrLeuMetLysTyrIleValIleLeuSerLysLysGlu{V}++ 203680 : TAACACTGATGAAGTATATCGTTATATTGAGTAAAAaggaa{g}gt............ : 203724 95 : Intron 1 >>>> {sp}LeuValProLeuIleAlaTyrMetArgLysAspTrpIle : 107 bp { !}|||:!!||||||:!! ! !!: !:!!|||||| ! ++{al}LeuLeuProLeuValAsnMetIleAlaGluAspTrpAla 203725 : .............ag{TT}CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCA : 203853 108 : LysThrArgLysArgGluHisLeuAlaGluMetArgAlaValGlyArgIleSerArgS : 127 ||| !!:!! ! ! .!. !! !! !|||! ! ! ! !||||||!!!|||: LysLeuLysThrAspPheGluArgAspValMetIleGlnArgThrArgIleThrArgA 203854 : AAGTTGAAAACGGATTTCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAG : 203913 128 : erMetThrIle<-><->HisLeuValIleLeuThrGlnIleMetValPheVal----T : 143 !!! !:!||| :!! !:!!|||!!!||| !:!!||| !!.!.:!!####| laThrSerIleLeuSerTyrAlaLeuIlePheThrAlaValMetPheMetIle####T 203914 : CAACCAGTATACTGAGTTATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCT : 203971 144 : yrMetLeuLeuGlnIleTyrLeuAsnValSerGlyPhePheProThrArgArgLeuPh : 162 ||... !! ! !:!! |||:!!..!! ! ! |||||| !!:! !|| yrGlnGluProValLeuProLeuAspThr***GlnThrLysProThr***LysSerPh 203972 : ACCAAGAACCGGTATTACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTT : 204028 163 : eTyrArg-----SerTyrTyrProTyrAspThrSerTyrThrProValTyrGluIleT : 180 |!:!|||#####:::|||||| |||||| ||| ! |||||| !!:!||||||! ePheArg#####ThrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleM 204029 : TTTCCGGTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTGAGATAA : 204087 181 : hrTrpIleSerGlnTyrTyrGlyAlaSerIleSerValIleAlaTyrValGlyValAs : 199 !!:::!! !||| ! ! ! !:!!! !!.!:!!..!|||:!!|||||||| etPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAs 204088 : TGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGA : 204144 200 : pSerPheIleGlyThrSerIleLeuHisValCysArgGlnUnkAlaIleLeuLysTyr : 218 |!:!|||.!!|||! !! !|||||||||:!!||| !!||| ! !! !|||::: pAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThr 204145 : TAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACA : 204201 219 : GluLeuGluHisLeu : 223 ..!|||! !:!!:!! ArgLeuAlaAsnIle 204202 : CGACTTGCAAACATA : 204218 vulgar: NvOr33PSE 4 223 . KQ414617.1 203450 204218 + 181 M 28 84 G 0 6 M 40 120 G 1 0 M 20 60 S 0 1 5 0 2 I 0 89 3 0 2 S 1 2 M 36 108 G 0 6 M 12 36 F 0 4 M 22 66 F 0 5 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203451 204218 181 + . gene_id 1 ; sequence NvOr33PSE ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203451 203721 . + . KQ414617.1 exonerate:protein2genome:local exon 203451 203721 . + . insertions 6 ; deletions 1 KQ414617.1 exonerate:protein2genome:local splice5 203722 203723 . + . intron_id 1 ; splice_site "gt" KQ414617.1 exonerate:protein2genome:local intron 203722 203814 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 203813 203814 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 203815 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 203815 204218 . + . insertions 6 ; deletions 0 ; frameshifts 9 KQ414617.1 exonerate:protein2genome:local similarity 203451 204218 181 + . alignment_id 1 ; Query NvOr33PSE ; Align 203451 5 84 ; Align 203541 33 120 ; Align 203661 74 60 ; Align 203817 95 108 ; Align 203931 131 36 ; Align 203971 143 66 ; Align 204042 165 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr33PSE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 322 -> 378 Target range: 204760 -> 204928 323 : GlnLeuAsnValLysThrThrGluLeuGlyIleAlaAlaPheAspCysAspTrpPheT : 342 ...|||::::!!|||:!! !|||:!! !:!!||||||!:!!!:|||!!:|||!!.! SerLeuSerIleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuA 204761 : tctttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGA : 204818 343 : hrLeuProThrSerGluValLysSerLeuGlyPheIleLeuLeuArgThrLysAsnPr : 361 .!||| !:!!!:!:!!!.!||||||||| !!!.|||:!! !|||.!!:!!!..|| snLeuLysSerAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgPr 204819 : ATTTGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCC : 204875 362 : oLeuAlaLeuThrAlaGlyLysPheCysSerPheThrMetValThrPheCys : 378 ||||..!|||||||||||||||... ...||||||:!!||||||||| oLeuCysLeuThrAlaGlyLysLeuPheProMetThrMetLeuThrPheCys 204876 : GCTCTGTTTAACCGcaggaaaattatttcctatGACGATGCTAACGTTTTGC : 204928 vulgar: NvOr33PSE 322 378 . KQ414617.1 204760 204928 + 143 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204761 204928 143 + . gene_id 2 ; sequence NvOr33PSE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204761 204928 . + . KQ414617.1 exonerate:protein2genome:local exon 204761 204928 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204761 204928 143 + . alignment_id 2 ; Query NvOr33PSE ; Align 204761 323 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr45 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 531 Query range: 13 -> 301 Target range: 1063101 -> 1061762 14 : LeuArgLeuIleGlyAspMetIleAlaIleTrpProLysHisIleGlyAlaLysLy : 32 |||..!||| !||| .!.! ..!! !|||||| ! !! !..!::!!..|| LeuGluLeuAlaGlyArgPheThrCysThrTrpProLeuAspSerAsnSerSerLy 1063101 : CTAGAATTGGCTGGAAGGTTCACGTGTACCTGGCCGTTAGATTCTAACAGCAGTAA : 1063047 33 : sThrMetIleMetPheHisGluValLysTrpTrpLeuSerPheThrAsnAlaThrG : 51 |! ! :!!:!:|||!.!.!.|||::!||| ! !!!!!!.!. !|||!.!! ! sArgGluValValPheArgAsnValArgTrpGlyPheThrIleLeuAsnValIleL 1063046 : AAGAGAAGTTGTCTTTCGTAACGTTCGATGGGGTTTCACGATACTAAACGTGATAT : 1062990 52 : lyLeuLeuIleProLeuValLeuGlyValTyrTyrPheArgAsnAspSerIleThr : 69 !||||||||| !!|||:!!|||...:::::::::||||||||||||! euLeuLeuIleSerLeuIleLeuAlaIlePheHisPheArgAsnAspIleThrIle 1062989 : TACTACTGATATCCTTGATACTcgcgatttttcactttcgaaaCGACATaactatt : 1062936 70 : MetThrLysThrLeuSerGluLeuThrAlaLeuCysGluValPheIleAsnLeuIl : 88 ::: ||||||:!!||||||:!!||||||||| ||||||!!.!!::!!:!!|| LeuMetLysThrIleSerGluMetThrAlaLeuLeuGluValLeuMetAspMetIl 1062935 : ttaatgaaaaccaTCTCCGAGATGACTGCTCTGCTGGAGGTGTTGATGGACATGAT : 1062879 89 : eGlnCysArgLeuGlnGluLysLysPheGln >>>> Target Intron 1 >> : 99 |! |||!:!:!!:!!... !:!!.!!||| 80 bp eLeuCysLysMetLysSerAlaGlnLeuGln++ 1062878 : TCTCTGCAAAATGAAGAGTGCACAGCTTCAggt....................... : 1062844 100 : >> ValIleLeuTyrGluIleGluAsnPheIleGluAsnSerAsnGluGlnGluG : 116 |||:!::!! :!!:!!:!! |||:!!:!! :!!|||:!!.!.||| ++ValLeuValGlyLysValLysAlaPheValLysValAlaAsnLysAsnGluI 1062843 : ..agGTGTTGGTAGGAAAAGTAAAGGCGTTTGTAAAAGTGGCAAACAAGAACGAGA : 1062715 117 : luSerLeuLeuGlnAspTyrLeuAsnArgTyrLysThrLeuGlnLeuPheValGly : 134 !.!:!!:!!|||! |||:!!:!!||||||||| !!!! ! :!!!.! leLysIleIleGlnGlyTyrValAspArgTyrLysArgPhePheGlyThrIleAla 1062714 : TTAAGATAATACAAGGATACGTGGATCGATATAAACGATTTTTCGGAACAATAGCA : 1062661 135 : SerSerPheIleSerThrAlaIleLeuPheSerCysIleProIlePheThrSerGl : 153 ! !.!!!:!:!!! !|||!.!||| !||||||! |||:!:|||:!! !|| MetGlyTyrValMetThrGlyIleThrPheSerLeuAlaProLeuPheSerValGl 1062660 : ATGGGATACGTAATGACTGGAATCACGTTCAGTTTGGCGCCTCTGTTTTCCGTACA : 1062604 154 : nLeuLeuProAlaAspAlaTrpTyrProPheSerValGluTyrPheProIleArgV : 172 | !||||||||||||!.!||| !|||||||||:!!:!! .!. !:!! ! nGluLeuProAlaAspGlyTrpIleProPheSerIleLysProLeuGlyValTyrC 1062603 : AGAATTGCCAGCAGACGGATGGATCCCGTTTTCCATTAAACCACTGGGAGTATATT : 1062547 173 : alPheLeuTyrIleThrGlnValLeuAlaIlePheGlnThrGlyPheGlyIleCys : 190 !.!!:!!|||.!!..!||||||! !..!|||.!!||||||!.!||| !!||| !! ysLeuValTyrPheValGlnValTyrCysIleLeuGlnThrAlaPheCysIleSer 1062546 : GCCTCGTATACTTTGTGCAGGTTTACTGCATTCTCCAAACAGCGTTCTGCATTAGC : 1062493 191 : ValAspLeuThrValAlaThrMetLeuTrpTyrSerAlaValGlnIleGluLeuLe : 209 ||||||!!!! !:!!||| !:!::!! ! !:!||||||!.!:!!:!!!!::!!|| ValAspPheMetIleAlaLeuLeuIleSerPheSerAlaAlaLysLeuAspIleLe 1062492 : GTGGATTTCATGATCGCTCTTCTAATCAGCTTCTCCGCGGCTAAATTAGACATACT : 1062436 210 : uGluLysAsnValHisLysAlaValSerLysAlaGluLeuArgGluCysAlaArgA : 228 |! !! !!!.:!!!..|||||| !.!! ! ! !! !||| !...|||!.!!:!. uGlyMetLysLeuArgLysAlaAsnGlyHisAspValLeuValSerCysValLysG 1062435 : GGGGATGAAACTGCGAAAAGCGAATGGCCACGACGTGCTGGTAAGCTGTGTCAAAG : 1062379 229 : rgHisGlnGluIleIle{Gl} >>>> Target Intron 2 >>>> {u}Phe : 235 .!|||||||||||||||{! } 263 bp {!}||| luHisGlnGluIleIle{Gl}++ ++{y}Phe 1062378 : AACACCAAGAGATAATA{GG}gt.........................ag{A}TTT : 1062095 236 : ThrAspAsnIleLysLysGlyIleLysPheIleIleLeuLysThrAsnAlaThrMe : 254 ..!!!::!!||||||! !..!:!!:!: ::::::...||||||||||||||||| ValGluAspIleLysThrSerValGluThrLeuLeuPheLysThrAsnAlaThrMe 1062094 : GTGGAGGATATTAAGACATCTGTCGAgactttgttattcaaaacgaACGCCACTAT : 1062038 255 : tIleIleValValIleCysGlyAlaPheGlnLeuIleHis >>>> Target In : 268 | !! !!.!||||||||||||.!!|||! !||||||:!! 132 tGlySerAlaValIleCysGlyThrPheProLeuIleTyr++ 1062037 : GGGAAGCGCTGTGATATGCGGAACGTTCCCGTTGATTTACgt.............. : 1061994 269 : tron 3 >>>> HisGluProLeuGluValLeuLeuArgPheThrLeuMetValL : 282 bp :!!:!! !!||| !|||:!! !!:!||| !! !:!!:!!| ++AsnGlnSerLeuThrValIleSerGlnPheLeuProLeuMetL 1061993 : ...........agAATCAGTCGCTGACAGTAATCAGTCAGTTTCTTCCTTTGATGC : 1061822 283 : euAlaGlyCysLeuArgLeuTyrValSerAlaLysProAlaAspAspLeuLysGlu : 300 ||:!!|||||| !||||||||||||! !:!! !||||||||||||||||||||| euSerGlyCysGlyArgLeuTyrValIleSerTrpProAlaAspAspLeuLysGlu 1061821 : TATCCGGCTGCGGACGACTATACGTCATCTCCTGGCCAGCAGATGATTTGAAAGAG : 1061768 301 : Asn : 301 !:! Ser 1061767 : AGC : 1061763 vulgar: NvOr45 13 301 . KQ414618.1 1063101 1061762 - 531 M 85 255 5 0 2 I 0 76 3 0 2 M 135 405 S 0 2 5 0 2 I 0 259 3 0 2 S 1 1 M 33 99 5 0 2 I 0 128 3 0 2 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1061763 1063101 531 - . gene_id 1 ; sequence NvOr45 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1062847 1063101 . - . KQ414618.1 exonerate:protein2genome:local exon 1062847 1063101 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1062845 1062846 . - . intron_id 1 ; splice_site "gt" KQ414618.1 exonerate:protein2genome:local intron 1062767 1062846 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1062767 1062768 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1062360 1062766 . - . KQ414618.1 exonerate:protein2genome:local exon 1062360 1062766 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1062358 1062359 . - . intron_id 2 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1062097 1062359 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1062097 1062098 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1061997 1062096 . - . KQ414618.1 exonerate:protein2genome:local exon 1061997 1062096 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1061995 1061996 . - . intron_id 3 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1061865 1061996 . - . intron_id 3 KQ414618.1 exonerate:protein2genome:local splice3 1061865 1061866 . - . intron_id 2 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1061763 1061864 . - . KQ414618.1 exonerate:protein2genome:local exon 1061763 1061864 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1061763 1063101 531 - . alignment_id 1 ; Query NvOr45 ; Align 1063102 14 255 ; Align 1062767 99 405 ; Align 1062096 235 99 ; Align 1061865 268 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr45 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 203 Query range: 97 -> 233 Target range: 1058143 -> 1057735 98 : GlnValIleLeuTyrGluIleGluAsnPheIleGluAsnSerAsnGluGlnGluGl : 116 ||||||:!:! !!:!!!:!!:||||||||| !..! !!:!!!.!...:::|||:: GlnValLeuTyrPheAspMetGluAsnPheCysArgTyrAlaThrSerLysGluLy 1058143 : CAGGTATTGTACTTCGACATGGAGAATTTCTGCAGATACGCCACCtcgaaggaaaa : 1058089 117 : uSerLeuLeuGlnAspTyrLeuAsnArgTyrLysThrLeuGlnLeuPheValGlyS : 135 : :::|||||| |||:!!:!!||||||||| !!!!!!. !.!! ! !! sValValLeuGlnArgTyrValAspArgTyrLysTyrPheHisGlyIleTyrIleL 1058088 : agttgtcCTGCAACGATACGTGGACAGATACAAATACTTTCATGGGATTTATATAT : 1058032 136 : erSerPheIleSerThrAlaIleLeuPheSerCysIleProIlePheThrSerGln : 153 !!!!! !.!! !|||.!!|||!!! !!! ! !! !|||:!:!:!:!! !!||| euTrpCysPheLeuThrThrIlePheValIleSerGlyProLeuTyrSerProGln 1058031 : TATGGTGCTTCCTCACGACCATCTTCGTCATAAGTGGTCCATTGTACTCACCACAG : 1057978 154 : LeuLeuProAlaAspAlaTrpTyrProPheSerValGluTyrPheProIleArgVa : 172 !!!!|||.!! !!||| |||||||||..!||||||:!! ! !.!!!:::: ThrPheProThrHisAlaIleTyrProPheGlnValGluHisThrLeuPheLysIl 1057977 : ACGTTCCCCACTCATGCGATATATCCTTTCCAAGTGGAACATACACTGTTCAagat : 1057921 173 : lPheLeuTyrIleThrGlnValLeuAlaIlePheGlnThrGlyPheGlyIleCysV : 191 : :::|||... ||| !|||!.! !||||||.!!..! !|||!!:..!: eValIleTyrPheHisGlnSerLeuValGlyPheGlnAlaSerAlaGlyMetAlaI 1057920 : tgttatttatttccatCAGTCGTTAGTTGGTTTTCAGGCGTCCGCTGGTATGGCCA : 1057864 192 : alAspLeuThrValAlaThrMetLeuTrpTyrSerAlaValGlnIleGluLeuLeu : 209 !!||| ! !:!!||| !:!:||| ! |||:!!|||!.!::!.!!||||||||| leAspThrGlnIleAlaLeuLeuLeuArgTyrAlaAlaAlaArgPheGluLeuLeu 1057863 : TCGACACTCAAATTGCTCTTCTTCTGCGATACGCGGCTGCCAGGTTCGAGCTATTG : 1057810 210 : GluLysAsnValHisLysAlaValSerLysAlaGluLeuArgGluCysAlaArgAr : 228 ! !!!..!.:!!!..!!.||| !!!! ! ..!|||!!!!.!! ||| !..!!: GlyAsnGluMetArgAsnAlaAsnThrHisCysGluPheAsnAlaCysIleGluLy 1057809 : GGAAACGAGATGCGAAATGCAAATACTCACTGTGAATTCAATGCCTGCATAGAGAA : 1057753 229 : gHisGlnGluIleIle : 233 !|||...|||:!!:!! sHisSerGluLeuLeu 1057752 : GCACAGTGAACTTCTC : 1057736 vulgar: NvOr45 97 233 . KQ414618.1 1058143 1057735 - 203 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057736 1058143 203 - . gene_id 2 ; sequence NvOr45 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1057736 1058143 . - . KQ414618.1 exonerate:protein2genome:local exon 1057736 1058143 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057736 1058143 203 - . alignment_id 2 ; Query NvOr45 ; Align 1058144 98 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr46 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 138 Query range: 106 -> 239 Target range: 1058128 -> 1057732 107 : GluIleGluGluPhePheLysAsnSerSerProLysGluArgTyrIleLeuAspAr : 125 !!:!!:|||.!.|||! !!:! !!:!!!!! ||||||::: :::|||.!.|| AspMetGluAsnPheCysArgTyrAlaThrSerLysGluLysValValLeuGlnAr 1058128 : GACATGGAGAATTTCTGCAGATACGCCACCtcgaaggaaaaagttgtcCTGCAACG : 1058074 126 : gTyrAlaThrThrArgThrPhePheAsnIleTyrIleAlaIleAsnTyrPheValA : 144 ||||!.! !! ! !! !!:!|||:!! ! ! !:!! ! !|||:!!. gTyrValAspArgTyrLysTyrPheHisGlyIleTyrIleLeuTrpCysPheLeuT 1058073 : ATACGTGGACAGATACAAATACTTTCATGGGATTTATATATTATGGTGCTTCCTCA : 1058017 145 : laIleMetSerPheAsnPheGlyGlnLeuPheLeuLysAspArgProTyrProLeu : 162 !!! !!!:! ! !!! !|||! !|||!:! ..! !:! !!!:!||| ! hrThrIlePheValIleSerGlyProLeuTyr---SerProGlnThrPheProThr 1058016 : CGACCATCTTCGTCATAAGTGGTCCATTGTAC---TCACCACAGACGTTCCCCACT : 1057966 163 : AsnLeuTrpTyrProPheThrIleLysSerGlnValIleValValIleIleTyrIl : 181 :!! ! ||||||||| !:!::!! ! !:!!.!! ::::::||||||.. HisAlaIleTyrProPheGlnValGluHisThrLeuPheLysIleValIleTyrPh 1057965 : CATGCGATATATCCTTTCCAAGTGGAACATACACTGTTCAagattgttatttattt : 1057909 182 : eHisGlnValIleValIleThrHisThrLeuIleLeuIleValPheAspLeuIleV : 200 .|||||| !:!!||| ! !!!..!!! ! ! !!!:!.!.!!||| ! !: eHisGlnSerLeuValGlyPheGlnAlaSerAlaGlyMetAlaIleAspThrGlnI 1057908 : ccatCAGTCGTTAGTTGGTTTTCAGGCGTCCGCTGGTATGGCCATCGACACTCAAA : 1057852 201 : alGlnIlePheLeuTrpThrLeuAlaAlaArgPheGluLeuLeuGlnAlaAspPhe : 218 !! :!!.!!||| ! ! !||||||||||||||||||||| ! !!!:.!. leAlaLeuLeuLeuArgTyrAlaAlaAlaArgPheGluLeuLeuGlyAsnGluMet 1057851 : TTGCTCTTCTTCTGCGATACGCGGCTGCCAGGTTCGAGCTATTGGGAAACGAGATG : 1057798 219 : LysLysThrAlaSerGluMetAspLeuLysCysAsnIleGlnLysHisGlnTyrLe : 237 ::!!!..!! !!!!.!. !!:!!!!!...! !|||:!!||||||... ! || ArgAsnAlaAsnThrHisCysGluPheAsnAlaCysIleGluLysHisSerGluLe 1057797 : CGAAATGCAAATACTCACTGTGAATTCAATGCCTGCATAGAGAAGCACAGTGAACT : 1057741 238 : uIleArg : 239 |:!!||| uLeuArg 1057740 : TCTCAGg : 1057733 vulgar: NvOr46 106 239 . KQ414618.1 1058128 1057732 - 138 M 48 144 G 1 0 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057733 1058128 138 - . gene_id 1 ; sequence NvOr46 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1057733 1058128 . - . KQ414618.1 exonerate:protein2genome:local exon 1057733 1058128 . - . insertions 0 ; deletions 1 KQ414618.1 exonerate:protein2genome:local similarity 1057733 1058128 138 - . alignment_id 1 ; Query NvOr46 ; Align 1058129 107 144 ; Align 1057985 156 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr46 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 300 -> 357 Target range: 1024059 -> 1023888 301 : HisSerLeuAlaGluLysThrGlyGlyLeuAlaArgSerIleTyrAsnSerTyrTr : 319 ||| !|||:!!.!! !.!!:!!||| !!..!||||||:!!|||! || HisLeuTyrPheGluGlnAlaHisSerIleAlaTrpAspIleTyrAspSerSerTr 1024059 : catttatactTTGAACAGGCACACAGTATTGCCTGGGATATTTACGACTCCTCGTG : 1024005 320 : pIleAsnGlnThrGlnArgMetLysThrAsnValLeuIleValMetGlnArgCysG : 338 ||||||| !:!! !!:!:!::::!:!!..:!!:!!:!!:!!!!:|||||||||| pIleAsnAlaSerThrLysValArgSerArgIleValLeuIleIleGlnArgCysG 1024004 : GATTAACGCGTCCACGAAGGTTCGCAGTAGGATCGTGCTAATTATTCAAAGGTGCC : 1023948 339 : lnLysProThrValValLysIleSerGlyIleIleSerSerLeuSerPheArgPhe : 356 ||!:!|||! !..!:!! ! !! !|||.!!.!!!!!:!!! !|||!!.!:!||| lnArgProIleThrIleHisAlaIleGlyPhePheThrAlaTrpSerLeuLysPhe 1023947 : AGAGACCTATTACGATTCACGCTATTGGATTTTTCACCGCCTGGTCTTTAAAATTC : 1023894 357 : Cys : 357 ||| Cys 1023893 : TGT : 1023889 vulgar: NvOr46 300 357 . KQ414618.1 1024059 1023888 - 118 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1023889 1024059 118 - . gene_id 2 ; sequence NvOr46 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1023889 1024059 . - . KQ414618.1 exonerate:protein2genome:local exon 1023889 1024059 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1023889 1024059 118 - . alignment_id 2 ; Query NvOr46 ; Align 1024060 301 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr46 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 100 -> 239 Target range: 1038346 -> 1037932 101 : PheLysSerAlaValLysGluIleGluGluPhePheLysAsnSerSerProLysGl : 119 !!.:!!!.! !:!!:!!|||!!::!! ! !! !:!!!..:!!!.!||| ! || LeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGl 1038346 : TTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGA : 1038292 120 : uArgTyrIleLeuAspArgTyrAlaThrThrArgThrPhePheAsnIleTyrIleA : 138 |||| !!:!!!!!.!.||||||!.!!.!! !!..:::...||| ||| !: uArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysS 1038291 : AAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTT : 1038235 139 : laIleAsnTyrPheValAlaIleMetSerPheAsnPheGlyGlnLeuPheLeuLys : 156 !! ! !:!!:!:!!.!! !!!:! !.!. !.!!|||...|||.!!:!!... erSerTrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSer 1038234 : CGTCATGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCC : 1038181 157 : AspArgProTyrProLeuAsnLeuTrpTyrProPheThrIleLysSerGlnValIl : 175 ||| |||!:!||| !||| ! ||||||||| !!:!!!!.! !:!! !:! Asp---ProPheProThrAsnAlaValTyrProPheProValAsnPheGluProLe 1038180 : GAT---CCTTTTCCAACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTT : 1038127 176 : eValValIleIleTyrIleHisGlnValIleValIleThrHisThrLeuIleLeuI : 194 : ! !||||||!:!!!:|||||| !.!!||| !! !!!. ! ! !! ! uArgSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisA 1038126 : GAGAAGCATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACG : 1038070 195 : leValPheAspLeuIleValGlnIlePheLeuTrpThrLeuAlaAlaArgPheGlu : 212 ! !.!.:!!:!!:!! ! !:!:!!.||| ! !.!!|||||||||||| laSerMetAsnValLeuSerAlaLeuLeuLeuLeuPheThrThrAlaArgPheGlu 1038069 : CTAGTATGAATGTGCTTTCTGCACTGTTATTGCTATTCACTACAGCtcgtttcgaa : 1038016 213 : LeuLeuGlnAlaAspPheLysLysThrAlaSerGluMetAspLeuLysCysAsnIl : 231 :::|||..!.!!!!:!!.!:!!!...! !..! |||! !:!!! IleLeuMetThrGluLeuArgAsnValAsnAspIleGluThrLeuIleLysSerMe 1038015 : atattgaTGACGGAGTTGAGGAATGTCAATGATATCGAAACACTGATTAAGAGTAT : 1037959 232 : eGlnLysHisGlnTyrLeuIleArg : 239 ::!!|||:!!..! !:!! ||| tLysLysTyrSerThrValArgArg 1037958 : GAAAAAGTATTCGACTGTGCGGAGG : 1037933 vulgar: NvOr46 100 239 . KQ414618.1 1038346 1037932 - 116 M 57 171 G 1 0 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037933 1038346 116 - . gene_id 3 ; sequence NvOr46 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1037933 1038346 . - . KQ414618.1 exonerate:protein2genome:local exon 1037933 1038346 . - . insertions 0 ; deletions 1 KQ414618.1 exonerate:protein2genome:local similarity 1037933 1038346 116 - . alignment_id 3 ; Query NvOr46 ; Align 1038347 101 171 ; Align 1038176 159 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr46 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 100 -> 222 Target range: 1029179 -> 1028816 101 : PheLysSerAlaValLysGluIleGluGluPhePheLysAsnSerSerProLysGl : 119 !!.:!!!.! !:!!:!!|||!!::!! ! !! !:!!!..:!!!.!||| ! || LeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGl 1029179 : TTGCAGAAACTAATCGAAGAAATGAAGATTTGCTGTGAAACAGCGAAACCATACGA : 1029125 120 : uArgTyrIleLeuAspArgTyrAlaThrThrArgThrPhePheAsnIleTyrIleA : 138 |||| !!:!!!!!.!.||||||!.! !! ! !:!!!!.||| !!:!! !: uArgAspValPheGlnArgTyrValAspLysTyrSerLeuPheTyrValThrCysS 1029124 : AAGAGACGTCTTTCAACGATACGTCGATAAATACTCTTTATTTTACGTAACATGTT : 1029068 139 : laIleAsnTyrPheValAlaIleMetSerPheAsnPheGlyGlnLeuPheLeuLys : 156 !! !:!!:!:!!.!! !:!:! !.!. !.!.|||...! !.!!:!!... erSerTrpPheTyrLeuThrAlaValIleMetValLeuGlySerArgIleIleSer 1029067 : CGTCGTGGTTTTACTTAACAGCAGTTATTATGGTTCTGGGAAGTCGGATTATATCT : 1029014 157 : AspArgProTyrProLeuAsnLeuTrpTyrProPheThrIleLysSerGlnValIl : 175 ||| |||!:!||| !||| ! ||||||||| !!:!!!!.! !:!! !:! Asp---ProPheProThrAsnAlaValTyrProPheProValAsnPheGluProLe 1029013 : GAT---CCTTTTCCAACCAACGCCGTATATCCATTCCCTGTTAACTTTGAACCCTT : 1028960 176 : eValValIleIleTyrIleHisGlnValIleValIleThrHisThrLeuIleLeuI : 194 : ! !||||||!:!!!:|||||| !.!!||| !! !!!. ! ! !! !! uArgSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisT 1028959 : GAGAAGTATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACA : 1028903 195 : leValPheAspLeuIleValGlnIlePheLeuTrpThrLeuAlaAlaArgPheGlu : 212 ! !.!.:!!:!!:!!..! !:!:!!.||| ! !||||||||||||||| hrSerMetAsnValLeuThrAlaLeuLeuLeuLeuPheAlaAlaAlaArgPheGlu 1028902 : CTAGTATGAATGTGCTAACTGCATTGTTATTACTATTTGCTGCAGCTCGTTTCGAG : 1028849 213 : LeuLeuGlnAlaAspPheLysLysThrAla : 222 :!!|||..! !!!:.!.!:!!!...!::! IleLeuMetMetGluLeuArgAsnValSer 1028848 : ATACTGATGATGGAGCTGAGGAATGTCAGT : 1028817 vulgar: NvOr46 100 222 . KQ414618.1 1029179 1028816 - 111 M 57 171 G 1 0 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028817 1029179 111 - . gene_id 4 ; sequence NvOr46 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028817 1029179 . - . KQ414618.1 exonerate:protein2genome:local exon 1028817 1029179 . - . insertions 0 ; deletions 1 KQ414618.1 exonerate:protein2genome:local similarity 1028817 1029179 111 - . alignment_id 4 ; Query NvOr46 ; Align 1029180 101 171 ; Align 1029009 159 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr46 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 104 -> 239 Target range: 1052944 -> 1052542 105 : ValLysGluIleGluGluPhePheLysAsnSerSerProLysGluArgTyrIleLe : 123 :!!! !|||!!: !!:! !!|||.!.:!!..!! ! |||||| ! ||||| IleThrGluMetIleThrTyrValLysGluAlaGlnGlnPheGluArgGluIleLe 1052944 : ATTACAGAAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGAAAGGGAAATTCT : 1052890 124 : uAspArgTyrAlaThrThrArgThrPhePheAsnIleTyrIleAlaIleAsnTyrP : 142 | !!!.!||| ! !! ! !!! !.!!||| !! ! ! !||| ! uHisAsnTyrIleGlnLysCysLysLeuPheTyrGlyGlySerLeuIleTrpThrT 1052889 : CCACAACTATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGTTAATTTGGACAT : 1052833 143 : heValAlaIleMetSerPheAsnPheGlyGlnLeuPheLeuLysAspArgProTyr : 160 :!:!!..! !! !!!||| !!.|||! :!! !!||| !:!! |||!:! yrLeuCysAlaThrCysPheValLeuGlyProValValLeuProAsn---ProPhe 1052832 : ACCTCTGTGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCAAAT---CCTTTT : 1052782 161 : ProLeuAsnLeuTrpTyrProPheThrIleLysSerGlnValIleValValIleIl : 179 ||| !!:! ! !||||||||| !:!!!!. !! ! !!!: !!.!|||:! ProSerSerAlaGluTyrProPheArgValAsnArgThrProMetAsnAlaIleVa 1052781 : CCCAGCAGTGCAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAATGCTATTGT : 1052725 180 : eTyrIleHisGlnValIleValIleThrHisThrLeuIleLeuIleValPheAspL : 198 !|||:!:|||||| !.!!:!!! ! !!!. ! ! !! !||| ! ! ..!: lTyrLeuHisGlnSerPheIleSerPheGlnTyrSerAlaHisIleCysValSerI 1052724 : CTACCTGCACCAATCTTTCATAAGCTTTCAGTACAGTGCACACATATGTGTAAGCA : 1052668 199 : euIleValGlnIlePheLeuTrpThrLeuAlaAlaArgPheGluLeuLeuGlnAla : 216 !!.!!! ! :!!!!.||||||! ! !||||||||||||.!.! !||| ! lePheGlyAlaLeuLeuLeuTrpIleThrAlaAlaArgPheHisCysLeuThrLeu 1052667 : TTTTCGGAGCTCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGCTTAACTCTG : 1052614 217 : AspPheLysLysThrAlaSerGluMetAspLeuLysCysAsnIleGlnLysHisGl : 235 !!: !!:!!:!!!:!:!!||| |||! ! !:!!:!!|||!!.! GluValGlnGlnSerSerSerIleHisMetLeuIleIleCysValLysLysGlnLe 1052613 : GAGGTTCAACAAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAAGAAACAGCT : 1052557 236 : nTyrLeuIleArg : 239 ! |||! ||| uLeuLeuArgArg 1052556 : ACTACTGAGGAGG : 1052543 vulgar: NvOr46 104 239 . KQ414618.1 1052944 1052542 - 101 M 53 159 G 1 0 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1052543 1052944 101 - . gene_id 5 ; sequence NvOr46 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1052543 1052944 . - . KQ414618.1 exonerate:protein2genome:local exon 1052543 1052944 . - . insertions 0 ; deletions 1 KQ414618.1 exonerate:protein2genome:local similarity 1052543 1052944 101 - . alignment_id 5 ; Query NvOr46 ; Align 1052945 105 159 ; Align 1052786 159 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr43 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 190 Query range: 99 -> 242 Target range: 1062790 -> 1062361 100 : ArgIleAsnArgSerGluLeuGlnValLeuValGlnGluValPheAspPheMetLy : 118 ||| !||| !! !...:!!|||||||||||| !:!!||| ! |||:!:|| ArgGlnAsnValTyrArgIleGlnValLeuValGlyLysValLysAlaPheValLy 1062790 : CGACAAAATGTTTACCGTATTCAGGTGTTGGTAGGAAAAGTAAAGGCGTTTGTAAA : 1062736 119 : sAsnSerLysGlnAsnGluLysTyrIleMetArgLysHisTyrAsnArgPheLeuG : 137 | :!!!!.:!!||||||! ! |||!!:!:! !:!! :!!|||!:! ! sValAlaAsnLysAsnGluIleLysIleIleGlnGlyTyrValAspArgTyrLysA 1062735 : AGTGGCAAACAAGAACGAGATTAAGATAATACAAGGATACGTGGATCGATATAAAC : 1062679 138 : lyHisTyrThrIleLeuIleValLeuTyrValIleAlaSerLeuAlaPhePheCys : 155 !! !!:! !! !:!! !:!! !||||||!!:.!!.!!:!!.!!||| !! rgPhePheGlyThrIleAlaMetGlyTyrValMetThrGlyIleThrPheSerLeu 1062678 : GATTTTTCGGAACAATAGCAATGGGATACGTAATGACTGGAATCACGTTCAGTTTG : 1062625 156 : GlyAlaPheIleLeuGlyLysLysPheProMetAspAlaSerTyrProPheSerTh : 174 !.! !!.!..!!! !! !:!!:!!!!.||| |||!.!!!! !|||||||||! AlaProLeuPheSerValGlnGluLeuProAlaAspGlyTrpIleProPheSerIl 1062624 : GCGCCTCTGTTTTCCGTACAAGAATTGCCAGCAGACGGATGGATCCCGTTTTCCAT : 1062568 175 : rAspSerIleLeuValSerSerIleIlePheThrHisGlnThrPheSerIleValG : 193 ! ! !!:!: !|||! !!!!:!!:!!!:! ! |||..!!:!!!!|||:!!| eLysProLeuGlyValTyrCysLeuValTyrPheValGlnValTyrCysIleLeuG 1062567 : TAAACCACTGGGAGTATATTGCCTCGTATACTTTGTGCAGGTTTACTGCATTCTCC : 1062511 194 : lnAsnSerValLeuIleMetIleAspLeuLeuValIleThrLeuPheTrpTyrAla : 211 ||!..:!! !!! !|||! :!:|||!!!:!!:!! ! !|||.!! ! !:!:!! lnThrAlaPheCysIleSerValAspPheMetIleAlaLeuLeuIleSerPheSer 1062510 : AAACAGCGTTCTGCATTAGCGTGGATTTCATGATCGCTCTTCTAATCAGCTTCTCC : 1062457 212 : GlyAlaArgIleLysIleLeuGlyTyrLysPheLysIleValAspSerAsnGluLy : 230 !.!|||!:!:!! ! ||||||||| |||.!.::!! !!.!:!!.!!:!!!!: AlaAlaLysLeuAspIleLeuGlyMetLysLeuArgLysAlaAsnGlyHisAspVa 1062456 : GCGGCTAAATTAGACATACTGGGGATGAAACTGCGAAAAGCGAATGGCCACGACGT : 1062400 231 : sLeuLysAsnCysIleLysGluHisGlnLysIleIle : 242 !||| !!:!|||:!!||||||||||||:!!|||||| lLeuValSerCysValLysGluHisGlnGluIleIle 1062399 : GCTGGTAAGCTGTGTCAAAGAACACCAAGAGATAATA : 1062362 vulgar: NvOr43 99 242 . KQ414618.1 1062790 1062361 - 190 M 143 429 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1062362 1062790 190 - . gene_id 1 ; sequence NvOr43 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1062362 1062790 . - . KQ414618.1 exonerate:protein2genome:local exon 1062362 1062790 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1062362 1062790 190 - . alignment_id 1 ; Query NvOr43 ; Align 1062791 100 429 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr43 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 190 -> 248 Target range: 1026552 -> 1026381 191 : IleValGlnAsnSerValLeuIleMetIleAspLeuLeuValIleThrLeuPheTr : 209 |||:!!.!. !:!! !:!!!!:.!.:!:||||||||||||||||||:!!.!.|| IleLeuAsnAlaAlaSerValMetPheLeuAspLeuLeuValIleThrIleIleTr 1026552 : ATTTTAAATGCCGCGTCAGTGATGTTCCTGGACTTACTCGTAATTACTATAATATG : 1026498 210 : pTyrAlaGlyAlaArgIleLysIleLeuGlyTyrLysPheLysIleValAspSerA : 228 |:!!||| !..!!:!.!!!..||||||||| !|||!!.||| ... :::. pHisAlaThrCysLysPheSerIleLeuGlySerLysLeuLys---ThrThrAsnG 1026497 : GCACGCTACTTGTAAATTTAGTATATTAGGTAGCAAGTTGAAA---ACtacgaatg : 1026444 229 : snGluLysLeuLysAsnCysIleLysGluHisGlnLysIleIleGlnTyrValAla : 246 ..:::||||||||| |||!:!|||||||||!!. !|||:!!|||||| luLysLysLeuLysMetTrpIleArgGluHisGlnAsnAlaIleLysTyrValTyr 1026443 : aaaagaaattgaaaatgtggATCAGAGAACATCAAAATGCAATCAAGtatgtttat : 1026390 247 : SerIle : 248 |||||| SerIle 1026389 : tcaatt : 1026382 vulgar: NvOr43 190 248 . KQ414618.1 1026552 1026381 - 112 M 33 99 G 1 0 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1026382 1026552 112 - . gene_id 2 ; sequence NvOr43 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1026382 1026552 . - . KQ414618.1 exonerate:protein2genome:local exon 1026382 1026552 . - . insertions 0 ; deletions 1 KQ414618.1 exonerate:protein2genome:local similarity 1026382 1026552 112 - . alignment_id 2 ; Query NvOr43 ; Align 1026553 191 99 ; Align 1026454 225 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr44 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 450 Query range: 0 -> 234 Target range: 1058517 -> 1057732 1 : MetAlaPheLysIleSerProGluLysAlaPheThrPheThrLysLeuSerValPh : 19 ||| ! !..|||!!!||||||:!!|||.!!:!!|||||||||||||||||| MetArgLysSerIleThrProGluGlnAlaIleSerPheThrLysLeuSerValAl 1058517 : ATGAGGAAAAGTATAACGCCGGAACAAGCGATCTCGTTCACGAAACTGAGCGTCGC : 1058463 20 : ePheThrAlaIleTrpProProAsnCysAsnAspSerSerPheLysIleLysLeuA : 38 ! ! |||..! |||||||||::: ! ! !!!!!! !:!!:!! !||| aValThrCysSerTrpProProSerProLeuAlaThrArgThrGlnValLeuLeuP 1058462 : TGTAACTTGTTCGTGGCCACCGTCACCTCTGGCGACCAGAACTCAAGTTTTGCTCT : 1058406 39 : laAsnIlePheTrpIleTyrSerIleIleSerAlaMetCysLeuLeuIleProMet : 56 !|||! !!.|||! ! :!!.!!:!!|||.!!!!:...||||||:!:|||:!: heAsnThrLeuTrpSerThrAlaPheValSerThrIleAlaLeuLeuLeuProLeu 1058405 : TTAATACGTTGTGGAGCACAGCATTCGTTAGCACCATCGCGCTGCTTTTGCCGCTA : 1058352 57 : LeuAlaSerValLeuValTyrLysAspAsnProMetIleValSerLysSerIleCy : 75 |||::!.!!:!!! !! !|||::: ! :!!|||!!:|||:!!.!!|||!!!:!! ! LeuSerGlyIleTyrGluTyrArgLysAspProIleIleLeuGlyLysThrValSe 1058351 : TTGAGCGGAATTTACGAGTACCGTAAAGACCCCATCATTCTTGGGAAAACAGTCAG : 1058295 76 : sLeuSerCysAlaValIleGlnValIleAlaLysAlaIleValCysArgHisHisG : 94 !|||:!!! |||||| !|||||| ! !||| !|||:!!|||||| !!!.| rLeuAlaSerAlaValAlaGlnValAlaIleLysMetIleMetCysArgPheGlnG 1058294 : CCTCGCCTCGGCTGTCGCCCAGGTGGCAATCAAAATGATAATGTGCCGTTTCCAGC : 1058238 95 : lnLysLysLeuGln >>>> Target Intron 1 >>>> PheLeuValLysG : 103 |||||:!!!!!||| 83 bp ! ||| ! ! lnLysGlnPheGln++ ++ValLeuTyrPheA 1058237 : AGAAGCAATTCCAGgt.........................agGTATTGTACTTCG : 1058128 104 : luLeuThrHisPheLeuLysLysAlaLysLysGluGluArgGlnLeuIleGluLys : 121 !::!! !:!!|||! !!:! ! |||! ...:::|||::: ::::!::!!::! spMetGluAsnPheCysArgTyrAlaThrSerLysGluLysValValLeuGlnArg 1058127 : ACATGGAGAATTTCTGCAGATACGCCACCtcgaaggaaaaagttgtcCTGCAACGA : 1058074 122 : TyrIleAsnArgArgAlaIlePheHisMetThrPheThrLeuCysCysPheGlySe : 140 |||:!::!!||| ! ! !|||||| !! !!:!! !|||!! |||||| !!! TyrValAspArgTyrLysTyrPheHisGlyIleTyrIleLeuTrpCysPheLeuTh 1058073 : TACGTGGACAGATACAAATACTTTCATGGGATTTATATATTATGGTGCTTCCTCAC : 1058017 141 : rSerPhePheValIleCysGlyProIlePheLeuProPheSerLeuProAlaAspA : 159 !!!!.!!||||||||| !!||||||:!:!:!! !||| !!!!!!|||.!! !!| rThrIlePheValIleSerGlyProLeuTyrSerProGlnThrPheProThrHisA 1058016 : GACCATCTTCGTCATAAGTGGTCCATTGTACTCACCACAGACGTTCCCCACTCATG : 1057960 160 : laValTyrProPheSerValAsnSerSerProIleTrpGluIleIleTyrValHis : 177 ||:!!|||||||||..!|||.!. !!!!! !.!! :::|||||| ||| laIleTyrProPheGlnValGluHisThrLeuPheLysIleValIleTyrPheHis 1057959 : CGATATATCCTTTCCAAGTGGAACATACACTGTTCAagattgttatttatttccat : 1057906 178 : GlnAlaSerValGlyIleGlnAlaSerSerGlyMetCysValAspAsnLeuValAl : 196 |||:!!! !||||||.!!|||||||||:!!||||||..!:!!|||!.!! !:!!|| GlnSerLeuValGlyPheGlnAlaSerAlaGlyMetAlaIleAspThrGlnIleAl 1057905 : CAGTCGTTAGTTGGTTTTCAGGCGTCCGCTGGTATGGCCATCGACACTCAAATTGC : 1057849 197 : aTyrIleLeuTrpTyrThrGlyValArgPheGluSerLeuTyrTyrLysPheLysH : 215 | !:!!||| ! |||.!!!.!!.!||||||||| !||| !!:!!.!.::!: aLeuLeuLeuArgTyrAlaAlaAlaArgPheGluLeuLeuGlyAsnGluMetArgA 1057848 : TCTTCTTCTGCGATACGCGGCTGCCAGGTTCGAGCTATTGGGAAACGAGATGCGAA : 1057792 216 : isIleLysAspSerLysGluMetLeuGlnCysIleLysGluHisGlnTyrLeuLeu : 233 !! !!!. ! ! |||.!. ! ||||||:!!:!!|||... ! |||||| snAlaAsnThrHisCysGluPheAsnAlaCysIleGluLysHisSerGluLeuLeu 1057791 : ATGCAAATACTCACTGTGAATTCAATGCCTGCATAGAGAAGCACAGTGAACTTCTC : 1057738 234 : Arg : 234 ||| Arg 1057737 : AGg : 1057733 vulgar: NvOr44 0 234 . KQ414618.1 1058517 1057732 - 450 M 98 294 5 0 2 I 0 79 3 0 2 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057733 1058517 450 - . gene_id 1 ; sequence NvOr44 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1058224 1058517 . - . KQ414618.1 exonerate:protein2genome:local exon 1058224 1058517 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1058222 1058223 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1058141 1058223 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1058141 1058142 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1057733 1058140 . - . KQ414618.1 exonerate:protein2genome:local exon 1057733 1058140 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057733 1058517 450 - . alignment_id 1 ; Query NvOr44 ; Align 1058518 1 294 ; Align 1058141 99 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr44 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 217 Query range: 95 -> 305 Target range: 1052959 -> 1052202 96 : LysLeuGlnPheLeuValLysGluLeuThrHisPheLeuLysLysAlaLysLysGl : 114 ...|||||| :!!:!!! !|||:!!! ! !:!:!!|||:!!|||:!!:!! SerLeuGlnArgIleIleThrGluMetIleThrTyrValLysGluAlaGlnGlnPh 1052959 : TCTTTACAGCGAATAATTACAGAAATGATCACGTACGTCAAAGAGGCGCAGCAATT : 1052905 115 : uGluArgGlnLeuIleGluLysTyrIleAsnArgArgAlaIlePheHisMetThrP : 133 ||||||:!!:!!:!!.!.!!.||||||.!.!:! !! !:!!|||:!! !! eGluArgGluIleLeuHisAsnTyrIleGlnLysCysLysLeuPheTyrGlyGlyS 1052904 : CGAAAGGGAAATTCTCCACAACTATATCCAAAAATGCAAACTTTTTTACGGTGGTT : 1052848 134 : heThrLeuCysCysPheGlySerSerPhePheValIleCysGlyProIlePheLeu : 151 !:!!!! !:! !!!!:!! !! ! !!:!!! ||||||:!! !!||| erLeuIleTrpThrTyrLeuCysAlaThrCysPheValLeuGlyProValValLeu 1052847 : CGTTAATTTGGACATACCTCTGTGCAACTTGTTTCGTATTAGGACCCGTTGTTCTA : 1052794 152 : ProPheSerLeuProAlaAspAlaValTyrProPheSerValAsnSerSerProIl : 170 ||| ! !!!!!|||::!..!|||! !||||||||| !!|||||| !!!!!|||!! ProAsnProPheProSerSerAlaGluTyrProPheArgValAsnArgThrProMe 1052793 : CCAAATCCTTTTCCCAGCAGTGCAGAGTATCCGTTTCGCGTTAATCGTACACCCAT : 1052737 171 : eTrpGluIleIleTyrValHisGlnAlaSerValGlyIleGlnAlaSerSerGlyM : 189 : ! |||:!!|||:!!||||||:!!! !:!!.!!.!!||| !|||:!! !! tAsnAlaIleValTyrLeuHisGlnSerPheIleSerPheGlnTyrSerAlaHisI 1052736 : GAATGCTATTGTCTACCTGCACCAATCTTTCATAAGCTTTCAGTACAGTGCACACA : 1052680 190 : etCysValAspAsnLeuValAlaTyrIleLeuTrpTyrThrGlyValArgPheGlu : 207 !:||||||..!! !!!!! !||| !:!!|||||| !|||!.!!.!||||||.!. leCysValSerIlePheGlyAlaLeuLeuLeuTrpIleThrAlaAlaArgPheHis 1052679 : TATGTGTAAGCATTTTCGGAGCTCTTTTACTCTGGATTACGGCTGCGAGATTTCAT : 1052626 208 : SerLeuTyrTyrLysPheLysHisIleLysAspSerLysGluMetLeuGlnCysIl : 226 !!!||| ! :!! !!:!!!!.! !..!..!! ! ! !:!::!! |||:! CysLeuThrLeuGluValGlnGlnSerSerSerIleHisMetLeuIleIleCysVa 1052625 : TGCTTAACTCTGGAGGTTCAACAAAGTTCAAGTATTCATATGTTAATCATCTGTGT : 1052569 227 : eLysGluHisGlnTyrLeuLeuArgTyrGlyThrThrValAlaAspThrPheArgT : 245 !|||:!! ||| ||||||||| !! ! ::: | lLysLys---GlnLeuLeuLeuArgArg******GluAspPheAlaIleTyrAspT 1052568 : TAAGAAA---CAGCTACTACTGAGGAGGTGATAAGaagattttgcaatttatgatT : 1052515 246 : yrValIlePheThrThrValLeuSerValThrAlaGlyLeuAlaPheAlaGlyIle : 263 || !!||| ! ||| ! !||| !! ! ! !||| ! !! ! !!:!: yrPheIleValThrAspCysLeuPro***PheLeuGlyThrProLysLysTrpLeu 1052514 : ACTTTATCGTAACTGATTGTTTGCCATAATTTTTAGGTACGCCAAAGAAGTGGTTG : 1052461 264 : TyrLeuPheSer >>>> Target Intron 1 >>>> ProGlnProIlePhe : 272 :!!|||.!! 130 bp ! !|||:!!.!! ThrValPheGly-+ ++GluIleProLeuIle 1052460 : ACGGTTTTCGGCtt.........................agGAAATACCGTTAATT : 1052304 273 : ValLysGlyGlnPheValValValSerIleSerValValValAsnLeuTyrValTh : 291 ||||||! !|||||||||..!||||||.!!!!!|||:!!!.!.!.:!!|||:!! ValLysValGlnPheValThrValSerPheThrValLeuAlaGluIleTyrMetTy 1052303 : GTGAAAGTGCAATTCGTAACTGTAAGCTTCACTGTACTCGCAGAAATTTATATGTA : 1052247 292 : rAlaLeuProSerAsnAsnLeuIleSerMetCysHisLysVal : 305 !|||! ! !!:!!:!! !!:!!! !..!||| :!!::::!! rAlaTrpSerAlaAspTyrMetLysAspMetValAsnArgIle 1052246 : CGCATGGTCAGCTGACTACATGAAAGACATGGTAAATCGTATT : 1052203 vulgar: NvOr44 95 305 . KQ414618.1 1052959 1052202 - 217 M 133 399 G 1 0 M 38 114 5 0 2 I 0 126 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1052203 1052959 217 - . gene_id 2 ; sequence NvOr44 ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1052447 1052959 . - . KQ414618.1 exonerate:protein2genome:local exon 1052447 1052959 . - . insertions 0 ; deletions 1 KQ414618.1 exonerate:protein2genome:local splice5 1052445 1052446 . - . intron_id 1 ; splice_site "TT" KQ414618.1 exonerate:protein2genome:local intron 1052317 1052446 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052317 1052318 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052203 1052316 . - . KQ414618.1 exonerate:protein2genome:local exon 1052203 1052316 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1052203 1052959 217 - . alignment_id 2 ; Query NvOr44 ; Align 1052960 96 399 ; Align 1052561 230 114 ; Align 1052317 268 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr44 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 160 Query range: 90 -> 233 Target range: 1062790 -> 1062361 91 : ArgHisHisGlnLysLysLeuGlnPheLeuValLysGluLeuThrHisPheLeuLy : 109 |||!!.:!! ! ::::!!||| ! |||||| !:!!:!!! ! |||:!!|| ArgGlnAsnValTyrArgIleGlnValLeuValGlyLysValLysAlaPheValLy 1062790 : CGACAAAATGTTTACCGTATTCAGGTGTTGGTAGGAAAAGTAAAGGCGTTTGTAAA : 1062736 110 : sLysAlaLysLysGluGluArgGlnLeuIleGluLysTyrIleAsnArgArgAlaI : 128 | !|||!!.|||.!.|||! !:!!:!!|||:!! !|||:!::!!||| ! ! sValAlaAsnLysAsnGluIleLysIleIleGlnGlyTyrValAspArgTyrLysA 1062735 : AGTGGCAAACAAGAACGAGATTAAGATAATACAAGGATACGTGGATCGATATAAAC : 1062679 129 : lePheHisMetThrPheThrLeuCysCysPheGlySerSerPhePheValIleCys : 146 !||| ! |||.!..!!:!! ! ! ! ! !!!!.!!.!! !!! !! rgPhePheGlyThrIleAlaMetGlyTyrValMetThrGlyIleThrPheSerLeu 1062678 : GATTTTTCGGAACAATAGCAATGGGATACGTAATGACTGGAATCACGTTCAGTTTG : 1062625 147 : GlyProIlePheLeuProPheSerLeuProAlaAspAlaValTyrProPheSerVa : 165 !.!|||:!:|||! ! ! ..!||||||||||||!.! ! !|||||||||:! AlaProLeuPheSerValGlnGluLeuProAlaAspGlyTrpIleProPheSerIl 1062624 : GCGCCTCTGTTTTCCGTACAAGAATTGCCAGCAGACGGATGGATCCCGTTTTCCAT : 1062568 166 : lAsnSerSerProIleTrpGluIleIleTyrValHisGlnAlaSerValGlyIleG : 184 !!!. !! ! !:!!!:: :!!:!!||| !! |||!.!! ! ! !:!!| eLysProLeuGlyValTyrCysLeuValTyrPheValGlnValTyrCysIleLeuG 1062567 : TAAACCACTGGGAGTATATTGCCTCGTATACTTTGTGCAGGTTTACTGCATTCTCC : 1062511 185 : lnAlaSerSerGlyMetCysValAspAsnLeuValAlaTyrIleLeuTrpTyrThr : 202 ||.!!:!!! ! !!!!: !!|||||| !:!!:!!||| !:!!:!! ! !:!:!! lnThrAlaPheCysIleSerValAspPheMetIleAlaLeuLeuIleSerPheSer 1062510 : AAACAGCGTTCTGCATTAGCGTGGATTTCATGATCGCTCTTCTAATCAGCTTCTCC : 1062457 203 : GlyValArgPheGluSerLeuTyrTyrLysPheLysHisIleLysAspSerLysGl : 221 !.!!.!!:!!!.!!:! !||| |||.!.::! ! !!.! ! ! ! ! AlaAlaLysLeuAspIleLeuGlyMetLysLeuArgLysAlaAsnGlyHisAspVa 1062456 : GCGGCTAAATTAGACATACTGGGGATGAAACTGCGAAAAGCGAATGGCCACGACGT : 1062400 222 : uMetLeuGlnCysIleLysGluHisGlnTyrLeuLeu : 233 !:!!:!!...|||:!!|||||||||||| ! :!!:!! lLeuValSerCysValLysGluHisGlnGluIleIle 1062399 : GCTGGTAAGCTGTGTCAAAGAACACCAAGAGATAATA : 1062362 vulgar: NvOr44 90 233 . KQ414618.1 1062790 1062361 - 160 M 143 429 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1062362 1062790 160 - . gene_id 3 ; sequence NvOr44 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1062362 1062790 . - . KQ414618.1 exonerate:protein2genome:local exon 1062362 1062790 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1062362 1062790 160 - . alignment_id 3 ; Query NvOr44 ; Align 1062791 91 429 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr44 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 150 Query range: 0 -> 98 Target range: 1053857 -> 1053563 1 : MetAlaPheLysIleSerProGluLysAlaPheThrPheThrLysLeuSerValPh : 19 ||| ! :!!:!:!!!|||||||||!.!.!! !.!!! ! !!!!|||||| MetLeuLysGlnLeuThrProGluLysValIleAspIleIleTrpPheSerValAl 1053857 : ATGTTGAAACAACTGACACCGGAGAAAGTCATCGACATCATTTGGTTTAGCGTGGC : 1053803 20 : ePheThrAlaIleTrpProProAsnCysAsnAspSerSerPheLysIleLysLeuA : 38 !.!..!!!.! !||||||! !::! !!::!! !|||!.! !:!!:!! aLeuAlaValCysTrpProLeuSerSerSerAlaSerLysAlaGlnValValAlaP 1053802 : TCTGGCAGTCTGTTGGCCACTTTCTAGCTCTGCTAGTAAAGCTCAAGTCGttgctt : 1053746 39 : laAsnIlePheTrpIleTyrSerIleIleSerAlaMetCysLeuLeuIleProMet : 56 ...|||... ||| ||| |||||||||:!: !||||||:!!|||:!! heLysIleLeuGlnIleCysSerAlaIleSerAlaLeuIleLeuLeuLeuProLeu 1053745 : ttaaaattttacaaatttgcaGCGCGATCAGCGCACTCATTTTACTCTTACCACTG : 1053692 57 : LeuAlaSerValLeuValTyrLysAspAsnProMetIleValSerLysSerIleCy : 75 ||| !|||..!! !:!!:!! |||:!! !!!::!!:!!|||:!!|||||||| LeuTyrSerThrTyrLeuHisPheAspAspValIleValLeuSerGlnSerIleCy 1053691 : TTGTACTCAACTTACTTGCACTTCGACGATGTCATTGTTCTTTCTCAGAGCATCTG : 1053635 76 : sLeuSerCysAlaValIleGlnValIleAlaLysAlaIleValCysArgHisHisG : 94 ||||||| !.!|||.!!|||:!!||| !:!!.!!:!!:!!||| ! !:!! sLeuSerMetGlyValPheGlnMetIleMetGlnThrValIleCysPheThrAsnT 1053634 : CTTGTCGATGGGTGTTTTTCAAATGATTATGCAGACTGTCATATGTTTCACCAACT : 1053578 95 : lnLysLysLeuGln : 98 ! ! |||||| yrAspLeuLeuGln 1053577 : ACGACCTTCTGCAG : 1053564 vulgar: NvOr44 0 98 . KQ414618.1 1053857 1053563 - 150 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1053564 1053857 150 - . gene_id 4 ; sequence NvOr44 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1053564 1053857 . - . KQ414618.1 exonerate:protein2genome:local exon 1053564 1053857 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1053564 1053857 150 - . alignment_id 4 ; Query NvOr44 ; Align 1053858 1 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr44 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 298 -> 362 Target range: 1024050 -> 1023858 299 : IleSerMetCysHisLysValGlyAspValValTyrGluSerLeuTrpValGlyAs : 317 .!!..!..!...|||!..:!!!.! ! !:!!|||!!:|||! !|||:!!..!! PheGluGlnAlaHisSerIleAlaTrpAspIleTyrAspSerSerTrpIleAsnAl 1024050 : tTTGAACAGGCACACAGTATTGCCTGGGATATTTACGACTCCTCGTGGATTAACGC : 1023996 318 : pSerProSerIleMetLysHisTrpIlePheIleIleGlnArgCysGlnLysProV : 336 ||| !!!.!:!! !..... :!:.!.||||||||||||||||||!:!|||: aSerThrLysValArgSerArgIleValLeuIleIleGlnArgCysGlnArgProI 1023995 : GTCCACGAAGGTTCGCAGTAGGATCGTGCTAATTATTCAAAGGTGCCAGAGACCTA : 1023939 337 : alValIleAlaIleProGlyLeuIleLysGluLeuSerLeuGlnPheTyrSerSer : 354 !!..!||| ! ! !|||!!!.!!! ! ! !||||||:!!|||! !.!!..! leThrIleHisAlaIleGlyPhePheThrAlaTrpSerLeuLysPheCysGlyGln 1023938 : TTACGATTCACGCTATTGGATTTTTCACCGCCTGGTCTTTAAAATTCTGTGGACAG : 1023885 355 : ValLeuCysSerThrPheSerTyr : 362 |||! ! ||| ||| ::: ValCysArgSerLeuPhePhePhe 1023884 : GTATGTcgatctcttttttttttt : 1023859 vulgar: NvOr44 298 362 . KQ414618.1 1024050 1023858 - 102 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1023859 1024050 102 - . gene_id 5 ; sequence NvOr44 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1023859 1024050 . - . KQ414618.1 exonerate:protein2genome:local exon 1023859 1024050 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1023859 1024050 102 - . alignment_id 5 ; Query NvOr44 ; Align 1024051 299 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr35 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 165 -> 256 Target range: 3164352 -> 3164625 166 : LeuPheGlyPheAspIleArgMetIleSerAsnIleThrAspTyrGlyGluLysHi : 184 :!!! !!.!||| ||| !:!!! !||| !:!:||||||!:!.!!...!:! ! IleCysAlaPheTrpIleTyrValArgSerLeuLeuThrAspPheSerSerArgLy 3164353 : ATTTGTGCGTTCTGGATATACGTGAGATCGCTTTTGACAGATTTTAGTAGTAGAAA : 3164407 185 : sLeuLeuValGlnSerTyrPheProTyrAspTyrSerLysSerProAsnTyrGluI : 203 |||:!! !!!:!:!!!::!!.||||||||||||||| :!!|||! !!:! : sLeuMetPheArgAlaTrpLeuProTyrAspTyrSerProAlaProIlePheIleL 3164408 : ACTGATGTTTCGAGCATGGTTACCCTACGATTACTCCCCTGCGCCCATTTTTATCC : 3164464 204 : leThrGlnValSerGlnLeuIleAlaGlyPhePheIleGlyMetSerValSerVal : 221 !!||| ||| !||| !||||||!.! .!. ! !!! ||| ! !..! euThrPheValHisGlnAlaIleAlaAlaThrIleCysCysThrSerSerValThr 3164465 : TTACCTTCGTCCATCAAGCTATAGCCGCGACGATATGTTGCACTTCGAGCGTCACT : 3164518 222 : ProAspAsnTyrPheGlyAlaLeuLeuPheHisAlaSerAlaGlnPheGluIleLe : 240 !|||::! !:! !!.!||||||.!!:!! !! !..!|||||||||||||| ValAspSerLeuTyrThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLe 3164519 : GTGGATTCTCTATACACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACT : 3164575 241 : uGlyAlaAsnLeuGluAsnLeuValArgGlnAspAspLysAlaLeuArg : 256 |! ! !..!|||..!|||:!! !! !:!!.!.||| ! :!!:!!!:! uGluHisArgLeuArgAsnValLysThrGluGlnAspAspSerValLys 3164576 : AGAACATCGTCTAAGGAACGTTAAAACTGAGCAGGATGACTCTGTGAAG : 3164625 vulgar: NvOr35 165 256 . KQ414646.1 3164352 3164625 + 126 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164353 3164625 126 + . gene_id 1 ; sequence NvOr35 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164353 3164625 . + . KQ414646.1 exonerate:protein2genome:local exon 3164353 3164625 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164353 3164625 126 + . alignment_id 1 ; Query NvOr35 ; Align 3164353 166 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr35 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 168 -> 256 Target range: 3157833 -> 3158097 169 : PheAspIleArgMetIleSerAsnIleThrAspTyrGlyGluLysHisLeuLeuVa : 187 ||| !||| !:!!! !||| !:!:! !|||!:!.!!.!.!:! ! |||:!! ! PhePheIleTyrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPh 3157834 : TTCTTTATATACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTT : 3157888 188 : lGlnSerTyrPheProTyrAspTyrSerLysSerProAsnTyrGluIleThrGlnV : 206 !!:!:!!!::.!.||||||||||||||| :!!|||! !!:! :!!|||...| eArgAlaTrpIleProTyrAspTyrSerProAlaProIlePheIleLeuThrSerV 3157889 : TCGAGCATGGATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTCCG : 3157945 207 : alSerGlnLeuIleAlaGlyPhePheIleGlyMetSerValSerValProAspAsn : 224 || !||| !||||||..! .!. ! !!! |||..! !..! !|||!.! alHisGlnAlaIleAlaSerThrIleCysCysThrSerThrValThrValAspThr 3157946 : TCCATCAAGCTATAGCCTCGACGATATGTTGCACTTCGACCGTCACTGTGGATACT : 3157999 225 : TyrPheGlyAlaLeuLeuPheHisAlaSerAlaGlnPheGluIleLeuGlyAlaAs : 243 !:! !!.!||||||.!!:!! !! !..!|||||||||||||||! ! !.. LeuTyrThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisAr 3158000 : CTATACACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCG : 3158056 244 : nLeuGluAsnLeuValArgGlnAspAspLysAlaLeuArg : 256 !|||..!|||:!! !! !:!!.!.||| ! :!!:!!!:! gLeuArgAsnValLysThrGluGlnAspAspSerValLys 3158057 : TCTAAGGAACGTTAAAACTGAGCAGGATGACTCTGTGAAG : 3158097 vulgar: NvOr35 168 256 . KQ414646.1 3157833 3158097 + 125 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157834 3158097 125 + . gene_id 2 ; sequence NvOr35 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3157834 3158097 . + . KQ414646.1 exonerate:protein2genome:local exon 3157834 3158097 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157834 3158097 125 + . alignment_id 2 ; Query NvOr35 ; Align 3157834 169 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr35 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 168 -> 256 Target range: 1946870 -> 1946606 169 : PheAspIleArgMetIleSerAsnIleThrAspTyrGlyGluLysHisLeuLeuVa : 187 ||| !||| !:!!! !||| !:!:! !|||!:!.!!.!.!:! ! |||:!! ! PhePheIleTyrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPh 1946870 : TTCTTTATATACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTT : 1946816 188 : lGlnSerTyrPheProTyrAspTyrSerLysSerProAsnTyrGluIleThrGlnV : 206 !!:!:!!!::.!.||||||||||||||| :!!|||! !!:! :!!||| | eArgAlaTrpIleProTyrAspTyrSerProAlaProIlePheIleLeuThrPheV 1946815 : TCGAGCATGGATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCG : 1946759 207 : alSerGlnLeuIleAlaGlyPhePheIleGlyMetSerValSerValProAspAsn : 224 || !||| !||||||!.! .!. ! !!! ||| ! !..! !|||::! alHisGlnAlaIleAlaAlaThrIleCysCysThrSerSerValThrValAspSer 1946758 : TCCATCAAGCTATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCT : 1946705 225 : TyrPheGlyAlaLeuLeuPheHisAlaSerAlaGlnPheGluIleLeuGlyAlaAs : 243 !:! !!.!||||||.!!:!! !! !..!|||||||||||||||! ! !.. LeuTyrThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisAr 1946704 : CTATACACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCG : 1946648 244 : nLeuGluAsnLeuValArgGlnAspAspLysAlaLeuArg : 256 !|||..!|||:!! !! !:!!.!.||| ! :!!:!!!:! gLeuArgAsnValLysThrGluGlnAspAspSerValLys 1946647 : TCTAAGGAACGTTAAAACTGAGCAGGATGACTCTGTGAAG : 1946607 vulgar: NvOr35 168 256 . KQ414661.1 1946870 1946606 - 121 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946607 1946870 121 - . gene_id 1 ; sequence NvOr35 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946607 1946870 . - . KQ414661.1 exonerate:protein2genome:local exon 1946607 1946870 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1946607 1946870 121 - . alignment_id 1 ; Query NvOr35 ; Align 1946871 169 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr39PSE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 268 -> 322 Target range: 1394230 -> 1394392 269 : GluAsnLysPhePheArgThrLysIleLysGlnLeuValGlnArgHisValHisLe : 287 :!!:!!!:!!!.! |||!.!! ! !|||..!|||:!!!!.|||||| !!..:! LysHisArgLeuSerArgAsnThrThrLysSerLeuIleHisArgHisHisArgIl 1394231 : AAACACAGATTATCGAGAAACACCACCAAATCATTAATTCACAGACATCATCGAAT : 1394285 288 : uIleSerPheValGluMetIleGluAsnSerPheAsnLeuIleIleLeuAlaGlnT : 306 !|||! ! ! !!!: ||||||!:! !|||:::! !||| !||| !||| eIleIleAsnSerAspSerIleGluSerLeuPheSerTyrIleAlaLeuMetGlnT 1394286 : CATTATTAATTCGGACTCTATCGAGAGTCTTTTTTCATACATTGCTTTGATGCAGT : 1394342 307 : hrIleCysLeuThrLeuIleIleCysCysLeuGlyPheAsnIleIleMet : 322 !:!!||| !||||||:!!|||||||||:!!|||||| |||:!!!!: rpLeuCysAsnThrLeuValIleCysCysIleGlyPheLeuIleValIle 1394343 : GGTTATGTAACACGCTCGTTATATGTTGCATAGGATTCTTAATAGTAATT : 1394392 vulgar: NvOr39PSE 268 322 . KQ414716.1 1394230 1394392 + 111 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394231 1394392 111 + . gene_id 1 ; sequence NvOr39PSE ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1394231 1394392 . + . KQ414716.1 exonerate:protein2genome:local exon 1394231 1394392 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394231 1394392 111 + . alignment_id 1 ; Query NvOr39PSE ; Align 1394231 269 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr39PSE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 275 -> 322 Target range: 1401093 -> 1401234 276 : LysIleLysGlnLeuValGlnArgHisValHisLeuIleSerPheValGluMetIl : 294 :::|||||| ...:::.!.|||||| !.!.:!!||| !|||!.!|||! || GlnIleLysPhePheIleAsnArgHisGlnGluIleIleValPheAlaGluArgIl 1401094 : caaataaaattcttcattaACAGACATCAGGAAATTATTGTTTTTGCAGAAAGAAT : 1401148 295 : eGluAsnSerPheAsnLeuIleIleLeuAlaGlnThrIleCysLeuThrLeuIleI : 313 ||||!!. !|||!..! !!!: !|||::!||| !:!:! ! !|||:!!|||| eGluLysLeuPheThrTyrMetAlaLeuSerGlnLeuValSerAsnThrIleIleI 1401149 : TGAGAAACTTTTTACATACATGGCTCTCAGTCAACTTGTGTCCAATACGATAATTA : 1401205 314 : leCysCysLeuGlyPheAsnIleIleMet : 322 ||||||||:!!|||||| !:!!:!!!!: leCysCysValGlyPheLeuValValIle 1401206 : TATGTTGCGTAGGATTTCTCGTTGTAATT : 1401234 vulgar: NvOr39PSE 275 322 . KQ414716.1 1401093 1401234 + 105 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401094 1401234 105 + . gene_id 2 ; sequence NvOr39PSE ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1401094 1401234 . + . KQ414716.1 exonerate:protein2genome:local exon 1401094 1401234 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401094 1401234 105 + . alignment_id 2 ; Query NvOr39PSE ; Align 1401094 276 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr39PSE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 363 -> 423 Target range: 1387619 -> 1387799 364 : SerGluGlyIleSerGluAlaAlaTyrAspCysAspTrpTyrThrLeuProAlaAs : 382 |||||| !!|||!!!:!!:!:...|||::: |||||| !||| ! !!.. SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 383 : nCysAlaArgGluIleIleProIleMetValArgAlaSerTyrProLeuGlnLeuS : 401 . |||||| :::::: |||::::::|||:!!..! ! !||| !|||! gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 402 : erAlaGlyLysPhePheTyrLeuSerLeuAsnAlaPheLeuSerIleValLysThr : 419 !!|||||||||||| ! !!||||||||| !|||||| !!::::: ... hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnValArgAsn*** 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgtaagaaattga : 1387785 420 : SerPheGlyTyr : 423 :::||| ||| AsnPheArgTyr 1387786 : aattttcggtaT : 1387799 vulgar: NvOr39PSE 363 423 . KQ414716.1 1387619 1387799 + 101 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387799 101 + . gene_id 3 ; sequence NvOr39PSE ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387799 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387799 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387799 101 + . alignment_id 3 ; Query NvOr39PSE ; Align 1387620 364 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr38 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 165 -> 237 Target range: 36734 -> 36950 166 : GlnAsnIleThrAspTyrGlyArgGlnProLeuLeuValGlnSerTyrTyrProTyrAsp : 185 ||||||! !:!!!!:!:!..! ! ! !||||||:!!! !:!! !:!||||||||| GlnAsnThrSerGluPheAsnValGlyGlyLeuLeuIleProAlaThrPheProTyrAsp 36735 : CAAAACACCTCGGAGTTCAACGTAGGAGGACTACTTATCCCGGCCACATTTCCATACGAC : 36792 186 : TyrSerGlnSerProAsnPheGluIleThrHisSerSerGlnIleValAlaAlaCysPhe : 205 !:!:!!|||||||||!:!||||||||| !.!!|||.!!|||!.!.!! !!. ThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrValLeu 36793 : ACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTG : 36852 206 : ValAlaMetSerLeuAlaValProAspAsnTyrPheGlyAlaLeuValPheHisIleSer : 225 !|||!!:!!!! !:!! ! !|||!..!:! !!!.!!.!||||||!!.||||||!!! SerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHisIleCys 36853 : AGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGC : 36912 226 : GlyGlnPheGlnLeuLeuGlyLeuAsnPheGluHis : 237 ||||||!!. :!!||| !!:!! !.!!|||:!! GlyGlnLeuThrValLeuArgIleAlaLeuGluAsn 36913 : GGCCAATTAACTGTTCTCCGCATTGCCCTCGAGAAT : 36950 vulgar: NvOr38 165 237 . KQ414804.1 36734 36950 + 122 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36735 36950 122 + . gene_id 1 ; sequence NvOr38 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36735 36950 . + . KQ414804.1 exonerate:protein2genome:local exon 36735 36950 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36735 36950 122 + . alignment_id 1 ; Query NvOr38 ; Align 36735 166 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr38 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 170 -> 235 Target range: 44859 -> 45054 171 : TyrGlyArgGlnProLeuLeuValGlnSerTyrTyrProTyrAspTyrSerGlnSerPro : 190 |||.!! !! !|||||| !!!:::!!|||!:!||||||||| !..! |||||| TyrSerGlyThrArgLeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerPro 44860 : TACAGCGGCACCAGACTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCA : 44917 191 : AsnPheGluIleThrHisSerSerGlnIleValAlaAlaCysPheValAlaMetSerLeu : 210 |||!:!|||.!!||| ! !:!!||||||:!!||||||! !!:!!.!|||! !!!! ! AsnTyrGluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyr 44918 : AATTACGAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATAC : 44977 211 : AlaValProAspAsnTyrPheGlyAlaLeuValPheHisIleSerGlyGlnPheGlnLeu : 230 .!!!.! !|||!.!!:!.!!! ! !|||:!!.!.|||:!!!!!||||||.!!..! ! ThrAlaValAspThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsn 44978 : ACAGCCGTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAAT : 45037 231 : LeuGlyLeuAsnPhe : 235 ||| !! !.!.||| LeuArgAsnGluPhe 45038 : TTGAGAAACGAATTC : 45054 vulgar: NvOr38 170 235 . KQ414804.1 44859 45054 + 120 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44860 45054 120 + . gene_id 2 ; sequence NvOr38 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44860 45054 . + . KQ414804.1 exonerate:protein2genome:local exon 44860 45054 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44860 45054 120 + . alignment_id 2 ; Query NvOr38 ; Align 44860 171 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr34PSE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 273 -> 326 Target range: 40004 -> 40241 274 : TyrSerSerProAlaSerTyrAlaArgAspLeuIleProIleMetValArgSerAsnVal : 293 |||..!! !||| !!!.!:!!||| !...|||:!! !:!:!!: !|||:!!.!.||| TyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAlaGlnVal 40005 : TACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTG : 40062 294 : ProValGlnLeuThrAlaGlyLysPhePheAlaLeuSerLeuAsnAlaTyrAlaUnk > : 313 !! !!|||:!!||||||||||||||| ! !!!!!||||||.!. !!:! !... SerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsnAla++ 40063 : TCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTgt. : 40124 314 : >>> Target Intron 1 >>>> IleLeuLysThrSerAlaGlyTyrIleSerMetL : 324 78 bp :!!|||||||||||||||||||||:!!|||:!!| ++ValLeuLysThrSerAlaGlyTyrLeuSerValL 40125 : ........................agGTTTTAAAAACGTCTGCTGGATATCTTTCCGTGT : 40233 325 : euLeuAla : 326 |||||||| euLeuAla 40234 : TGCTAGCT : 40241 vulgar: NvOr34PSE 273 326 . KQ414804.1 40004 40241 + 108 M 39 117 5 0 2 I 0 74 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 40005 40241 108 + . gene_id 1 ; sequence NvOr34PSE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 40005 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 40005 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40241 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40241 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 40005 40241 108 + . alignment_id 1 ; Query NvOr34PSE ; Align 40005 274 117 ; Align 40200 313 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr33PSE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 315 Query range: 8 -> 253 Target range: 30797 -> 31605 9 : ValIleSerTrpAsnArgArgIleLeuAsnIleValGlyIleTrpProGluProGluThr : 28 !.!:!!.!!||||||||| !!! !:!!.!.:!:|||||||||||||||||||||...! ! AlaLeuGlyTrpAsnArgTrpAsnMetGluLeuValGlyIleTrpProGluProSerArg 30798 : GCACTTGGATGGAACCGTTGGAACATGGAACTGGTTGGAATTTGGCCAGAACCGAGCAGA : 30855 29 : LysAsnSerLeuPheSerLysCysAsnPheValTrpAlaAlaPheLeuIlePheTyrPhe : 48 ...:!!..!! !!:: !!!!.! !!!. !:!! ! ! !|||:::|||...:::||| SerAspGlnArgTrpProAsnPheLysAlaLeuLeuPheIlePheValIleIlePhePhe 30856 : TCTGATCAACGATGGCCGAATTTCAAGGCTTTGCTGTTCATTTTTGtgataatatttttt : 30915 49 : ValSerAlaProGlnThrAlaAspLeuPheIleIleCysSerAsnMetAspLeuValVal : 68 :!!!.!||||||!:!!.!:!!|||.!!.!!|||!! .!!:!!:!:! ||||||..! GlyThrGlyProGlnSerValAsnLeuLeuPheIleTrpGlyAspLeuGlyLeuValThr 30916 : ggaaCCGGACCTCAGAGCGTGAATCTACTTTTCATATGGGGAGACCTTGGATTGGTCACG : 30975 69 : GluAsnLeuSerThrAlaAsnIleAlaIleThrThrThrLeuLeuLysLeuPheValPhe : 88 |||||||||||||||||||||||| !! !! !!.!.!!:!!:!!||||||.!!:!! ! GluAsnLeuSerThrAlaAsnIleProGlyIleAsnAlaMetMetLysLeuIleIleAla 30976 : GAAAATCTGTCCACGGCTAATATTCCCGGCATAAACGCCATGATGAAACTGATTATCGCC : 31035 89 : TrpPheAsnArgGlu{A} >>>> Target Intron 1 >>>> {sp}LeuValPro : 97 ||| !:!!|||!!:{!} 67 bp { !}.!! !||| TrpHisHisArgAsp{A}++ ++{la}PheLysPro 31036 : TGGCATCACAGAGAT{G}gt.........................ag{ct}tTCAAGCCC : 31129 98 : LeuIleAlaTyrMetArgLysAspTrpIleLysThrArgLysArgGluHisLeuAlaGlu : 117 :!!||| !! !.!. ! ! ||||||! !! :!!|||! :::|||... ValIleLysSerPheTyrAspAspTrpLysThrSerArgThrLysGluGluLysGluThr 31130 : GTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACcaaggaggagaaggagacC : 31189 118 : MetArgAlaValGlyArgIleSerArgSerMetThrIleHisLeuValIleLeuThrGln : 137 ||| ! ! !!.!!:!.!!:!!!:!..!!!::!!||| ! ! !:!!|||||| ! MetLeuLysArgAlaLysPheAlaLysGlnIleSerIleTrpCysSerValLeuThrLeu 31190 : ATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGGTGCTCAGTATTAACCTTG : 31249 138 : IleMetValPheValTyrMetLeuLeuGln<-><-><->IleTyr<->LeuAsnValSer : 153 ! !|||||| !||||||:!: !|||!:! |||||| |||:!! !:!! ThrMetValThrValTyrLeuSerLeuArgAlaTrpIleIleTyrGlnLeuAspArgAla 31250 : ACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATCTACCAGCTTGATAGGGCA : 31309 154 : GlyPhePheProThrArgArgLeuPheTyrArgSerTyrTyrProTyrAspThrSerTyr : 173 ..! ! ! !|||! !|||.!.|||! !.!!|||!:!|||!:!|||! ! !! AsnGlnLysGlnAspArgLeuLeuLeuTyrProGlyTyrPheProPheAspIleArgPro 31310 : AACCAGAAACAGGATCGTCTGCTCCTGTACCCTGGCTATTTTCCCTTCGATATTCGTCCA : 31369 174 : ThrProValTyrGluIleThrTrpIleSerGlnTyrTyrGlyAlaSerIleSerValIle : 193 ! ! !||| ! ||| .!!.!!||| !!.!|||! ! !:!!|||||| IleGlyValLeuLeuSerThrAsnPheGlyGlnValLeuAlaAlaTyrSerAlaValIle 31370 : ATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCAGCGTATTCCGCTGTTATC : 31429 194 : AlaTyrValGlyValAspSerPheIleGlyThrSerIleLeuHisValCysArgGlnUnk : 213 ::!|||..! !||||||!!!||||||!.!! ! !|||:!!|||:!!||| !!||| SerTyrThrThrValAspThrPheIleAlaMetLeuIleMetHisIleCysGlyGlnPhe 31430 : AGTTACACCACCGTGGATACATTTATCGCGATGCTGATAATGCACATATGCGGACAATTT : 31489 214 : AlaIleLeuLysTyrGluLeuGluHisLeuLeuAspProAlaAspAspGluLysTyrAsn : 233 ! !||||||!:! ! :!!|||..!...|||:!!||| |||!!::!!||| !!.. GluIleLeuArgGlnLysLeuArgArgLeuMetAsp------AspGluLysLysThrArg 31490 : GAGATACTGAGACAGAAATTACGAAGGCTGATGGAT------GACGAGAAGAAGACCAGA : 31543 234 : LeuLeuAsnSerValLysLysLysIleLysPheIleThrArgArgHisGluHisLeuAsn : 253 !:!!:!!..!:!!:!!|||:!!:!: !!.|||! !..!|||||||||||||||||| SerValAspGluIleGlnLysGluLeuValLeuIleIleGluArgHisGluHisLeuAsn 31544 : AGCGTGGATGAGATTCAGAAGGAGCTGGTTTTGATCATAGAGAGGCATGAGCATCTAAAT : 31603 vulgar: NvOr33PSE 8 253 . KQ414804.1 30797 31605 + 315 M 85 255 S 0 1 5 0 2 I 0 63 3 0 2 S 1 2 M 53 159 G 0 9 M 2 6 G 0 3 M 76 228 G 2 0 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 30798 31605 315 + . gene_id 1 ; sequence NvOr33PSE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 30798 31053 . + . KQ414804.1 exonerate:protein2genome:local exon 30798 31053 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 31054 31055 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 31054 31120 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 31119 31120 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 31121 31605 . + . KQ414804.1 exonerate:protein2genome:local exon 31121 31605 . + . insertions 12 ; deletions 2 KQ414804.1 exonerate:protein2genome:local similarity 30798 31605 315 + . alignment_id 1 ; Query NvOr33PSE ; Align 30798 9 255 ; Align 31123 95 159 ; Align 31291 148 6 ; Align 31300 150 228 ; Align 31528 228 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr33PSE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 267 Query range: 2 -> 233 Target range: 35897 -> 36983 3 : IleGlnAspPheAspPheValIleSerTrpAsnArgArgIleLeuAsnIleValGlyIle : 22 ||| !!:.!.||||||!.!!!:.!!||||||||| !! !|||::!:!!:!!|||:!: IleValGluMetAspPheAlaMetGlyTrpAsnArgPheSerLeuSerValLeuGlyVal 35898 : ATCGTTGAAATGGATTTTGCTATGGGATGGAATCGTTTCAGTTTATCTGTACTTGGCGTG : 35955 23 : TrpProGluProGluThrLysAsnSerLeu<-><->PheSerLysCysAsnPheValTrp : 40 ||||||||||||..!! !! !::!!:!||| |||:!!... ! !.!. !!||| TrpProGluProArgLysMetSerAsnLeuSerArgPheAlaSerAsnPheIlePheTrp 35956 : TGGCCAGAACCGAGAAAGATGTCTAACCTGTCACGATTCGCGTCTAACTTTATATTCTGG : 36015 41 : AlaAlaPheLeuIle<->PheTyrPheValSerAlaProGlnThrAlaAspLeuPheIle : 59 !.!! !|||||| !! !|||:!!!!!|||||||||! !.!! !!||| ! ::: PheThrThrLeuIleThrValValPheIleCysAlaProGlnMetThrHisLeuValLeu 36016 : TTCACGACTTTGATAACGGTTGTCTTCATATGCGCTCCCCAAATGACGCATTTGGTAtta : 36075 60 : IleCysSerAsnMetAspLeuValValGluAsnLeuSerThrAlaAsnIleAlaIleThr : 79 :::|||:::||| !|||:!!|||||||||||| !.!|||||| !!!!: ! LysSerThrAsnLeuAspGluValIleGluAsnLeuSer---ValAsnIleProMetLeu 36076 : aaatcgacgaatttgGACGAGGTGATAGAGAATCTGTCG---GTCAACATACCGATGCTC : 36132 80 : ThrThrLeu{L} >>>> Target Intron 1 >>>> {eu}LysLeuPheValPhe : 88 !:!!|||{ } 381 bp { !}||||||... PheSerLeu{A}+- +-{sp}LysLeuIlePheThr 36133 : TTCTCATTG{G}gc.........................aa{AC}AAACtgattttcaca : 36540 89 : TrpPheAsnArgGluAspLeuValProLeuIleAlaTyrMetArgLysAspTrpIleLys : 108 !.. ! !! |||||| !|||!!:::! ! !!: ! ! |||||| :!! IleHisThrSerLeuAlaLeuValPheLeuMetSerGlnIlePheAspAspTrpAlaGlu 36541 : attcacACGTCTCTAGCGCTAGTATTCTTAATGAGCCAAATATTCGACGACTGGGCGGAA : 36600 109 : ThrArgLysArgGluHisLeuAlaGluMetArgAlaValGlyArgIleSerArgSerMet : 128 !!! ! !..!! ! !!! ! ! !|||! ! !..!!.!!:!|||||||||! !!!: ProIleProGluValAspArgHisThrMetLeuLysThrAlaLysIleSerArgMetIle 36601 : CCAATCCCGGAGGTGGATCGCCACACGATGCTGAAGACCGCGAAAATTAGTCGAATGATA : 36660 129 : ThrIleHisLeuValIleLeuThrGlnIleMetValPheValTyrMetLeuLeuGlnIle : 148 :!!||| !! ! !||||||||| ! :!!||||||!!.!.!!:!:!!! !||||||||| SerIleValCysSerIleLeuThrTyrValMetValLeuAlaPheLeuSerLeuGlnIle 36661 : TCCATAGTCTGTTCTATCCTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATT : 36720 149 : TyrLeuAsnVal<-><->SerGlyPhePheProThrArgArgLeuPheTyrArgSerTyr : 166 !:: !!:!:!! !!!..! ||| !..! !! !!|||.!! !! !:!! TrpSerSerMetGlnAsnThrSerGluPheAsnValGlyGlyLeuLeuIleProAlaThr 36721 : TGGAGCAGCATGCAAAACACCTCGGAGTTCAACGTAGGAGGACTACTTATCCCGGCCACA : 36780 167 : TyrProTyrAspThrSerTyrThrProValTyrGluIleThrTrpIleSerGlnTyrTyr : 186 !:!||||||||||||!:! ! !:!||| !|||||||||||||||:!!.!!|||!:! PheProTyrAspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheVal 36781 : TTTCCATACGACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTG : 36840 187 : GlyAlaSerIleSerValIleAlaTyrValGlyValAspSerPheIleGlyThrSerIle : 206 |||.!! !:!:|||!.!|||..!||| ! !! !!|||!!!|||:!!!.!..! !:!: GlyThrValLeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuVal 36841 : GGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTG : 36900 207 : LeuHisValCysArgGlnUnkAlaIleLeuLysTyrGluLeuGluHisLeuLeuAspPro : 226 ||||||:!!||| !!||| .!!:!!|||::: !! ||||||:!!||| !:!! !! LeuHisIleCysGlyGlnLeuThrValLeuArgIleAlaLeuGluAsnLeuAlaAsnThr 36901 : TTACACATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTCGAGAATCTTGCTAACACG : 36960 227 : AlaAspAspGluLysTyrAsn : 233 .!! ! !!:!!.|||!:! ThrIleLysAspAsnTyrSer 36961 : ACAATAAAAGACAACTACAGC : 36983 vulgar: NvOr33PSE 2 233 . KQ414804.1 35897 36983 + 267 M 30 90 G 0 6 M 13 39 G 0 3 M 27 81 G 1 0 M 9 27 S 0 1 5 0 2 I 0 377 3 0 2 S 1 2 M 69 207 G 0 6 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 35898 36983 267 + . gene_id 2 ; sequence NvOr33PSE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 35898 36144 . + . KQ414804.1 exonerate:protein2genome:local exon 35898 36144 . + . insertions 9 ; deletions 1 KQ414804.1 exonerate:protein2genome:local splice5 36145 36146 . + . intron_id 1 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 36145 36525 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 36524 36525 . + . intron_id 0 ; splice_site "AA" KQ414804.1 exonerate:protein2genome:local cds 36526 36983 . + . KQ414804.1 exonerate:protein2genome:local exon 36526 36983 . + . insertions 6 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 35898 36983 267 + . alignment_id 2 ; Query NvOr33PSE ; Align 35898 3 90 ; Align 35994 33 39 ; Align 36036 46 81 ; Align 36117 74 27 ; Align 36528 84 207 ; Align 36741 153 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr33PSE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 164 Query range: 4 -> 91 Target range: 44104 -> 44362 5 : AspPheAspPheValIleSerTrpAsnArgArgIleLeuAsnIleValGlyIleTrpPro : 24 |||!!. ! !:!||| !.!!||||||!.! !! !:!!!...!!:!!|||||||||||| AspLeuLysTyrValTyrGlyTrpAsnHisTyrThrMetArgPheMetGlyIleTrpPro 44105 : GATTTGAAGTATGTGTACGGTTGGAACCATTACACCATGAGGTTCATGGGAATCTGGCCa : 44162 25 : GluProGluThrLysAsnSerLeuPheSerLysCysAsnPheValTrpAlaAlaPheLeu : 44 ||| ... |||..!! !! ||| ! !.!.:!! !!!.!.!!:!! GluGluArgLysTrpAsnGlnProSerSerTyrLeuAlaLeuIle---ProValLeuMet 44163 : gaggaaagaaaatggaaCCAACCATCGAGTTACCTAGCTCTAATA---CCAGTTCTCATG : 44219 45 : IlePheTyrPheValSerAlaProGlnThrAlaAspLeuPheIleIleCysSerAsnMet : 64 !!:||| !||||||!!!!.!||||||||| !:!!|||! .!!|||!! .!!:!!.!. MetPheLeuPheValCysValProGlnThrIleAsnLeuSerPheIleTrpGlyAspPhe 44220 : ATGTTTCTCTTCGTTTGTGTCCCACAAACGATCAATCTTTCATTCATCTGGGGTGATTTT : 44279 65 : AspLeuValValGluAsnLeuSerThrAlaAsnIleAlaIleThrThrThrLeuLeuLys : 84 :!!|||||||||||||||||||||! !!.!||||||.!!||||||! !:!!||||||||| AsnLeuValValGluAsnLeuSerMetGlyAsnIleThrIleThrIleSerLeuLeuLys 44280 : AATTTAGTGGTAGAGAATCTATCCATGGGTAACATAACAATCACTATTTCCCTTCTGAAG : 44339 85 : LeuPheValPheTrpPheAsn : 91 !.!!!.!||||||.!!||| ThrIleAlaPheTrpIleAsn 44340 : ACCATCGCTTTTTGGATCAAC : 44362 vulgar: NvOr33PSE 4 91 . KQ414804.1 44104 44362 + 164 M 35 105 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44105 44362 164 + . gene_id 3 ; sequence NvOr33PSE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44105 44362 . + . KQ414804.1 exonerate:protein2genome:local exon 44105 44362 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 44105 44362 164 + . alignment_id 3 ; Query NvOr33PSE ; Align 44105 5 105 ; Align 44210 41 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr33PSE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 326 -> 377 Target range: 34381 -> 34534 327 : LysThrThrGluLeuGlyIleAlaAlaPheAspCysAspTrpPheThrLeuProThrSer : 346 :!!!:!! !|||:!!.!!! !:!!|||!:!!!:! :!!|||!:!!.!:!! !! !! !! GlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProPro 34382 : CAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCA : 34439 347 : GluValLysSerLeuGlyPheIleLeuLeuArgThrLysAsnProLeuAlaLeuThrAla : 366 |||!.!|||!!!||| !||||||:!!! !|||||| ..!||||||..!||||||||| GluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAla 34440 : GAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCA : 34499 367 : GlyLysPheCysSerPheThrMetValThrPhe : 377 ||||||||| !!!!!|||:!!|||! !! !||| GlyLysPheSerThrPheSerMetGluMetPhe 34500 : GGAAAATTCAGTACCTTCTCCATGGAAATGTTC : 34534 vulgar: NvOr33PSE 326 377 . KQ414804.1 34381 34534 + 110 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34382 34534 110 + . gene_id 4 ; sequence NvOr33PSE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 34382 34534 . + . KQ414804.1 exonerate:protein2genome:local exon 34382 34534 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34382 34534 110 + . alignment_id 4 ; Query NvOr33PSE ; Align 34382 327 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr33PSE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 318 -> 377 Target range: 39938 -> 40115 319 : TyrValGlyGluGlnLeuAsnValLysThrThrGluLeuGlyIleAlaAlaPheAspCys : 338 |||::: ::: ||| ::!|||! !:!!||| !:!!|||!:!|||||| TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 339 : AspTrpPheThrLeuProThrSerGluValLysSerLeuGlyPheIleLeuLeuArgThr : 358 :!!|||!:! !|||||| !!!.!.!.!.! ||||||! !.!!:!::!!! !|||.!! AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 359 : LysAsnProLeuAlaLeuThrAlaGlyLysPheCysSerPheThrMetValThrPhe : 377 :!! !!!!! !:!!||||||||||||||| !! !!|||:!!:!:! ! !||| GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPhe 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTT : 40115 vulgar: NvOr33PSE 318 377 . KQ414804.1 39938 40115 + 107 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40115 107 + . gene_id 5 ; sequence NvOr33PSE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39939 40115 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40115 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40115 107 + . alignment_id 5 ; Query NvOr33PSE ; Align 39939 319 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr41 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 99 -> 230 Target range: 44670 -> 45063 100 : IleHisLeuAlaLysIleHisLysIleCysTyrAsnAlaArgLysThrTrpAlaArgIle : 119 :::|||... !:!: ! ...:!: ! ! ! ! ! !|||::!! !:!! LeuHisPheGlnAlaLeuLysSerLeuLeuLysCysMetAlaAspAspTrpSerThrVal 44671 : cttcatttccaaGCACTGAAATCTCTGCTGAAATGCATGGCCGACGATTGGAGCACAGTA : 44728 120 : LysAspProAspLeuValLysIleMetIleSerHisAlaLysThrGlyLysArgPheTyr : 139 ..! ! !||| !:!! ! ! !|||! !!:! !|||!:!! ! !!:!!:! ! SerLysLysAspAspLeuAspThrMetSerAsnIleAlaArgIleThrArgLysThrIle 44729 : TCGAAAAAAGATGATCTAGACACCATGAGTAACATCGCAAGGATCACCAGAAAGACTATA : 44788 140 : TyrLeuGlnMetSerIleAlaPheValIleValThrLeuTyrValPheAsnProLeuIle : 159 !...! !:!!..! !:!!:!:|||! ! !|||:!!||| ! !!!!:!! IleSerSerThrValLeuCysHisIleValValIleThrTyrIlePheLeuArgPheLeu 44789 : ATAAGCAGCACAGTGTTATGTCACATTGTGGTCATCACTTATATATTTCTACGATTCCTC : 44848 160 : LeuArgArgTyrAspAlaAlaAsnLeuProMetGlnThrValCysThrPheAsnAsnAla : 179 !|||!:!|||..!!.!.!!!..|||! !.!.!::.!! !! ! !!!:!:!!!:!! ! ThrArgLysTyrSerGlyThrArgLeuLeuPheArgAlaTyrPheProTyrAspSerAsp 44849 : ACCAGGAAGTACAGCGGCACCAGACTACTCTTCCGTGCTTATTTCCCTTACGACAGCGAT : 44908 180 : AspValLeuLysHisThrAlaValTyrPheIleGluThrLeuSerPheValTyrLeuAla : 199 ! ! !! !!!.:!! ! !..! .!! !:!!! !:!!:!! ! !!||| !||| ValSerProAsnTyrGluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAla 44909 : GTCAGTCCAAATTACGAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCC : 44968 200 : ValGlyPheIleSerIleAspLeuLeuPheLeuGlyIleAlaMetHisLeuCysGlyGln : 219 ..! !!:!! !:!!:!!||| !!!!.!!:!! !:!! !:!!|||:!!||||||||| ThrThrTyrThrAlaValAspThrPheIleValMetLeuIleLeuHisValCysGlyGln 44969 : ACCACATACACAGCCGTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAA : 45028 220 : LeuLysIleLeuGlnLysGluPheSerGluIle : 230 |||..!! !|||::!!!.||||||.!!:!!:!! LeuSerAsnLeuArgAsnGluPheGlyLysLeu 45029 : CTTTCGAATTTGAGAAACGAATTCGGTAAGCTT : 45063 vulgar: NvOr41 99 230 . KQ414804.1 44670 45063 + 108 M 131 393 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44671 45063 108 + . gene_id 1 ; sequence NvOr41 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44671 45063 . + . KQ414804.1 exonerate:protein2genome:local exon 44671 45063 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44671 45063 108 + . alignment_id 1 ; Query NvOr41 ; Align 44671 100 393 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr37 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 173 -> 265 Target range: 31323 -> 31605 174 : AsnArgAlaLeuLeuValGlnSerTyrTyrProTyrAspTyrTyrGluSerProAlaPhe : 193 :!!||| !|||||| !! .!!|||!:!|||!:!||| ! ! !! ! !!.!.!. AspArgLeuLeuLeuTyrProGlyTyrPheProPheAspIleArgProIleGlyValLeu 31324 : GATCGTCTGCTCCTGTACCCTGGCTATTTTCCCTTCGATATTCGTCCAATAGGGGTACTA : 31381 194 : GluLeuThrAsnLeuValGlnLeuThrAlaAlaPhePheValGlyMetThrValAlaIle : 213 !! !||||||!!!! !|||:!! !||||||!:!! !!.!! !!!:!:! !.!!! ! LeuSerThrAsnPheGlyGlnValLeuAlaAlaTyrSerAlaValIleSerTyrThrThr 31382 : CTGTCGACCAATTTTGGCCAAGTGCTCGCAGCGTATTCCGCTGTTATCAGTTACACCACC : 31441 214 : ProAspAspTyrPheCysAlaLeuMetPheHisValSerGlyGlnPheGluIleLeuGly : 233 !||| !:!.!!... !|||!!:.!.|||:!!!!!|||||||||||||||||| !! ValAspThrPheIleAlaMetLeuIleMetHisIleCysGlyGlnPheGluIleLeuArg 31442 : GTGGATACATTTATCGCGATGCTGATAATGCACATATGCGGACAATTTGAGATACTGAGA : 31501 234 : LeuGlnIleGluAsnLeuMetGlyLysAspAspAlaLysGluGlyValAsp<-><->Trp : 251 ! !:!!:!!..!!..||||||! ! ! !!: ! !! ..!.!!|||||| ! GlnLysLeuArgArgLeuMetAspAspGluLysLysThrArgSerValAspGluIleGln 31502 : CAGAAATTACGAAGGCTGATGGATGACGAGAAGAAGACCAGAAGCGTGGATGAGATTCAG : 31561 252 : SerLeuLeuGlySerPheValGluArgHisValHisLeuAsn : 265 !.! !|||! !! !.!!:!!|||||||||! !||||||||| LysGluLeuValLeuIleIleGluArgHisGluHisLeuAsn 31562 : AAGGAGCTGGTTTTGATCATAGAGAGGCATGAGCATCTAAAT : 31605 vulgar: NvOr37 173 265 . KQ414804.1 31323 31605 + 113 M 77 231 G 0 6 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31324 31605 113 + . gene_id 1 ; sequence NvOr37 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31324 31605 . + . KQ414804.1 exonerate:protein2genome:local exon 31324 31605 . + . insertions 6 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 31324 31605 113 + . alignment_id 1 ; Query NvOr37 ; Align 31324 174 231 ; Align 31561 251 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr35 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 105 -> 274 Target range: 31101 -> 31602 106 : ValTrpArgSerLysGlnValLeuArgProValIleGlnSerValSerAlaAspTrpLeu : 125 ::::::... ...:::....!!!:!|||||||||:!!||| !!! !! !|||||| ! IlePheHisPheAsnLysAlaPheLysProValIleLysSerPheTyrAspAspTrpLys 31102 : atttttcattttaacaaagcttTCAAGCCCGTTATAAAATCCTTCTACGACGATTGGAAA : 31159 126 : ArgProLysLeuAspTrpGluArgGluAlaMetIleArgGluAlaSerArgAlaArgIle : 145 ! ! !!!:! |||:::|||..!|||:!:!:!..!|||!.! !|||!:! ! ThrSerArgThrLysGluGluLysGluThrMetLeuLysArgAlaLysPheAlaLysGln 31160 : ACCTCAAGGACcaaggaggagaaggagacCATGTTGAAGAGAGCCAAATTTGCGAAACAA : 31219 146 : PheThrValSerGlyTyrAlaValLeuAlaGlyCysTyrThrGlyPheAlaPheAlaPro : 165 .!!:!!:!!!!! !!! !.!:!! ! ! ! !||| !.!!:! ! ! IleSerIleTrpCysSerValLeuThrLeuThrMetValThr------ValTyrLeuSer 31220 : ATTTCCATCTGGTGCTCAGTATTAACCTTGACCATGGTCACT------GTTTATCTAAGT : 31273 166 : LeuPheGlyPheAspIleArgMetIleSerAsnIleThrAspTyrGlyGluLysHisLeu : 185 ||| !.!!:: !||| !..!:!!..!!.. !!.!.!. ! !!!::::! ||| LeuArgAlaTrpIleIleTyrGlnLeuAspArgAlaAsnGlnLysGlnAspArgLeuLeu 31274 : CTTCGAGCGTGGATCATCTACCAGCTTGATAGGGCAAACCAGAAACAGGATCGTCTGCTC : 31333 186 : LeuValGlnSerTyrPheProTyrAspTyrSerLysSerProAsnTyrGluIleThrGln : 205 ||| !! .!!|||||||||!:!||| ! !! !! ! ! ! |||.!. LeuTyrProGlyTyrPheProPheAspIleArgProIleGlyValLeuLeuSerThrAsn 31334 : CTGTACCCTGGCTATTTTCCCTTCGATATTCGTCCAATAGGGGTACTACTGTCGACCAAT : 31393 206 : ValSerGlnLeuIleAlaGlyPhePheIleGlyMetSerValSerValProAspAsnTyr : 225 !!.!!|||:!!:!!|||!.!!:!! ! !! !!!:||| !!!!..! !|||!..!:! PheGlyGlnValLeuAlaAlaTyrSerAlaValIleSerTyrThrThrValAspThrPhe 31394 : TTTGGCCAAGTGCTCGCAGCGTATTCCGCTGTTATCAGTTACACCACCGTGGATACATTT : 31453 226 : PheGlyAlaLeuLeuPheHisAlaSerAlaGlnPheGluIleLeuGlyAlaAsnLeuGlu : 245 .!!!.! !|||:!!.!.||| !!!!!.!||||||||||||||| !! !!!.|||..! IleAlaMetLeuIleMetHisIleCysGlyGlnPheGluIleLeuArgGlnLysLeuArg 31454 : ATCGCGATGCTGATAATGCACATATGCGGACAATTTGAGATACTGAGACAGAAATTACGA : 31513 246 : AsnLeuValArgGlnAspAspLysAlaLeuArgSerArgGlnPheAsnArgArgPheGly : 265 !..|||:!! !.!.!!: ! |||.!! !!!! ! !:!!.!!.!.!:!..!.!.! ! ArgLeuMetAspAspGluLysLysThrArgSerValAspGluIleGlnLysGluLeuVal 31514 : AGGCTGATGGATGACGAGAAGAAGACCAGAAGCGTGGATGAGATTCAGAAGGAGCTGGTT : 31573 266 : IlePheValAspArgHisValHisLeu : 274 :!:.!!:!!!!:||||||! !|||||| LeuIleIleGluArgHisGluHisLeu 31574 : TTGATCATAGAGAGGCATGAGCATCTA : 31602 vulgar: NvOr35 105 274 . KQ414804.1 31101 31602 + 138 M 54 162 G 2 0 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31102 31602 138 + . gene_id 1 ; sequence NvOr35 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31102 31602 . + . KQ414804.1 exonerate:protein2genome:local exon 31102 31602 . + . insertions 0 ; deletions 2 KQ414804.1 exonerate:protein2genome:local similarity 31102 31602 138 + . alignment_id 1 ; Query NvOr35 ; Align 31102 106 162 ; Align 31264 162 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr35 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 173 -> 274 Target range: 36731 -> 37031 174 : IleSerAsnIleThrAspTyrGlyGluLysHisLeuLeuValGlnSerTyrPheProTyr : 193 !!:..!|||! !:!!!!:!:!..!! ! ! ||||||:!!! !:!! ||||||||| MetGlnAsnThrSerGluPheAsnValGlyGlyLeuLeuIleProAlaThrPheProTyr 36732 : ATGCAAAACACCTCGGAGTTCAACGTAGGAGGACTACTTATCCCGGCCACATTTCCATAC : 36789 194 : AspTyrSerLysSerProAsnTyrGluIleThrGlnValSerGlnLeuIleAlaGlyPhe : 213 ||| !:!|||||||||||||||||||||||| !:!!.!!|||!!!:!:!.! ! ! AspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrVal 36790 : GACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTG : 36849 214 : PheIleGlyMetSerValSerValProAspAsnTyrPheGlyAlaLeuLeuPheHisAla : 233 !!.! !!.!!!:!!! !||| ! !|||!..!:! !!!.!!.!|||:!!!!.||| ! LeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHisIle 36850 : TTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATA : 36909 234 : SerAlaGlnPheGluIleLeuGlyAlaAsnLeuGluAsnLeuValArgGlnAspAspLys : 253 !!!!.!|||!!. :!!||| !! ! !||||||||||||!.!!.! ! ||| CysGlyGlnLeuThrValLeuArgIleAlaLeuGluAsnLeuAlaAsnThrThrIleLys 36910 : TGCGGCCAATTAACTGTTCTCCGCATTGCCCTCGAGAATCTTGCTAACACGACAATAAAA : 36969 254 : AlaLeuArgSerArgGlnPheAsnArgArgPheGlyIlePheValAspArgHisValHis : 273 ! ! ! !|||!:! |||.!...!|||!!.||| !.!!||| !!|||!!. !!!. AspAsnTyrSerLys---PheGlnGluArgLeuGlyTyrIleValHisArgGlnAsnGln 36970 : GACAACTACAGCAAG---TTCCAAGAACGATTAGGATACATTGTGCACAGGCAGAATCAA : 37026 274 : Leu : 274 ||| Leu 37027 : TTG : 37031 vulgar: NvOr35 173 274 . KQ414804.1 36731 37031 + 133 M 85 255 G 1 0 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36732 37031 133 + . gene_id 2 ; sequence NvOr35 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36732 37031 . + . KQ414804.1 exonerate:protein2genome:local exon 36732 37031 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local similarity 36732 37031 133 + . alignment_id 2 ; Query NvOr35 ; Align 36732 174 255 ; Align 36987 260 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr35 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 179 -> 258 Target range: 44859 -> 45096 180 : TyrGlyGluLysHisLeuLeuValGlnSerTyrPheProTyrAspTyrSerLysSerPro : 199 |||.!!! ! ...|||||| !!!:::!!||||||||||||||| !..! |||||| TyrSerGlyThrArgLeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerPro 44860 : TACAGCGGCACCAGACTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCA : 44917 200 : AsnTyrGluIleThrGlnValSerGlnLeuIleAlaGlyPhePheIleGlyMetSerVal : 219 |||||||||.!!||| !:!!:!!|||:!!||||||!.!|||!:! !!.!! !!! ! AsnTyrGluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyr 44918 : AATTACGAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATAC : 44977 220 : SerValProAspAsnTyrPheGlyAlaLeuLeuPheHisAlaSerAlaGlnPheGluIle : 239 !!!!.! !|||!.!!:!.!!! ! !|||:!!.!.|||!.!!!!!.!|||.!!..!! ! ThrAlaValAspThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsn 44978 : ACAGCCGTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAAT : 45037 240 : LeuGlyAlaAsnLeuGluAsnLeuValArgGlnAspAspLysAlaLeuArgSerArg : 258 ||| !! !.!.!!!! !!.||| ! ! ||| ! !.!!|||!:!:!!!:! LeuArgAsnGluPheGlyLysLeuGlnAlaCysAspLysValThrLeuGlnAlaLys 45038 : TTGAGAAACGAATTCGGTAAGCTTCAAGCATGCGATAAAGTAACATTACAGGCGAAG : 45096 vulgar: NvOr35 179 258 . KQ414804.1 44859 45096 + 126 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44860 45096 126 + . gene_id 3 ; sequence NvOr35 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44860 45096 . + . KQ414804.1 exonerate:protein2genome:local exon 44860 45096 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44860 45096 126 + . alignment_id 3 ; Query NvOr35 ; Align 44860 180 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr36 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 14 -> 244 Target range: 30797 -> 31542 15 : AlaLeuGlyLeuAsnArgPheSerLeuArgLeuMetGlyIleTrpProAlaAspGlnAsp : 34 |||||||||! !||||||!::!:!:!!..!|||:!:|||||||||||| !!:! !..! AlaLeuGlyTrpAsnArgTrpAsnMetGluLeuValGlyIleTrpPro---GluProSer 30798 : GCACTTGGATGGAACCGTTGGAACATGGAACTGGTTGGAATTTGGCCA---GAACCGAGC : 30852 35 : GluSerSerLysSerLeuLeuThrValSerArgIleProLeuMetIleLeuValLeuLeu : 54 ..!|||..!:!! !!! !! !!.! !!!.! !:!:! !!!!!!:.!!:::::::::... ArgSerAspGlnArgTrpProAsnPheLysAlaLeuLeuPheIlePheValIleIlePhe 30853 : AGATCTGATCAACGATGGCCGAATTTCAAGGCTTTGCTGTTCATTTTTGtgataatattt : 30912 55 : CysGlyLeuPheLeuProGlnMetTrpAlaLeuAlaLeuValIleGluGlnLeuProLeu : 74 ||| ! ||||||! ! !||| !!!!:!! ! !.!.||| !||| PheGlyThrGly---ProGlnSerValAsnLeuLeuPheIleTrpGlyAspLeuGlyLeu 30913 : tttggaaCCGGA---CCTCAGAGCGTGAATCTACTTTTCATATGGGGAGACCTTGGATTG : 30969 75 : AlaIleAspAsnLeuMetThr<->SerCysProAlaPheThrSerCysIleLysLeuPhe : 93 !.!! !!:|||||| ||| !:! !|||!.!.!.!.!:!! !!:||||||.!! ValThrGluAsnLeuSerThrAlaAsnIleProGlyIleAsnAlaMetMetLysLeuIle 30970 : GTCACGGAAAATCTGTCCACGGCTAATATTCCCGGCATAAACGCCATGATGAAACTGATT : 31029 94 : PheIleTrpArgSerLysThr{I} >>>> Target Intron 1 >>>> {le}Leu : 102 .!! !|||!.! !!:! !{ } 67 bp { !}.!! IleAlaTrpHisHisArgAsp{A}++ ++{la}Phe 31030 : ATCGCCTGGCATCACAGAGAT{G}gt.........................ag{ct}tTC : 31123 103 : GlnProValIleAspSerAlaLeuGlnAspTyrLeuArgProLysSerLysSerGluGlu : 122 :!!||||||||| ! ||| !! !.!.|||!:: !! ! !!!:!!!:|||...|||::: LysProValIleLysSerPheTyrAspAspTrpLysThrSerArgThrLysGluGluLys 31124 : AAGCCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACcaaggaggagaag : 31183 123 : ThrAlaMetGlnArgGluAlaLeuArgGlyArgLeuValThrIleAlaAspTyrSerIle : 142 ..!||| !!:!..!||| ! !!.!!:!! !:!!:!!||| !::!!! ! GluThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIle------TrpCysSer 31184 : gagacCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATC------TGGTGCTCA : 31237 143 : MetAlaSerCysTyrValGlyPheIlePheMetProMetLeuGlyPheAsnValArgIle : 162 :!: !!!!! !:!!! ! !:!!!:!:!: !:!:! !!.!!::! !:!! ! ValLeuThrLeuThrMetValThrValTyrLeuSerLeuArgAlaTrpIleIleTyrGln 31238 : GTATTAACCTTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATCTACCAG : 31297 163 : IleAsnAsnLeuThrAspCysAspThrGlnArgValLeuLeuValGlnSerTyrPhePro : 182 :!!:!!!.. !!.!.!. ! !.!.|||:!!|||||| !! .!!||||||||| LeuAspArgAlaAsnGln---LysGlnAspArgLeuLeuLeuTyrProGlyTyrPhePro 31298 : CTTGATAGGGCAAACCAG---AAACAGGATCGTCTGCTCCTGTACCCTGGCTATTTTCCC : 31354 183 : TyrAspTyrAlaArgSerProAlaPheGluLeuThrHisLeuLeuGlnLeuAlaAlaSer : 202 !:!||| ! !! !! ! !!.!.!. !! !|||:!!!!! !|||:!! !|||:!! PheAspIleArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeuAlaAla 31355 : TTCGATATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCAGCG : 31414 203 : PhePheValGlyMetAlaIleSerIleProAspAspTyrPheCysAlaLeuLeuPheHis : 222 !:!! !!.!! !!!:::! !!!!! ! !||| !:!.!!... !|||:!!.!.||| TyrSerAlaValIleSerTyrThrThrValAspThrPheIleAlaMetLeuIleMetHis 31415 : TATTCCGCTGTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATAATGCAC : 31474 223 : AlaSerAlaGlnPheGluIleLeuGlyLeuGlnIleGluSerLeuProIleAspGlySer : 242 !!!!!.!||||||||||||||| !!! !:!!:!!..!!!!||| ! !|||! !!.! IleCysGlyGlnPheGluIleLeuArgGlnLysLeuArgArgLeuMetAspAspGluLys 31475 : ATATGCGGACAATTTGAGATACTGAGACAGAAATTACGAAGGCTGATGGATGACGAGAAG : 31534 243 : LysSer : 244 |||!!! LysThr 31535 : AAGACC : 31542 vulgar: NvOr36 14 244 . KQ414804.1 30797 31542 + 128 M 16 48 G 1 0 M 27 81 G 1 0 M 22 66 G 0 3 M 19 57 S 0 1 5 0 2 I 0 63 3 0 2 S 1 2 M 36 108 G 2 0 M 29 87 G 1 0 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 30798 31542 128 + . gene_id 1 ; sequence NvOr36 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 30798 31053 . + . KQ414804.1 exonerate:protein2genome:local exon 30798 31053 . + . insertions 3 ; deletions 2 KQ414804.1 exonerate:protein2genome:local splice5 31054 31055 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 31054 31120 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 31119 31120 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 31121 31542 . + . KQ414804.1 exonerate:protein2genome:local exon 31121 31542 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 30798 31542 128 + . alignment_id 1 ; Query NvOr36 ; Align 30798 15 48 ; Align 30846 32 81 ; Align 30927 60 66 ; Align 30996 82 57 ; Align 31123 102 108 ; Align 31231 140 87 ; Align 31318 170 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr36 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 174 -> 263 Target range: 44874 -> 45144 175 : LeuLeuValGlnSerTyrPheProTyrAspTyrAlaArgSerProAlaPheGluLeuThr : 194 |||||| !!!:::!!||||||||||||||| !! ! !|||||| !!:!|||!!!||| LeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThr 44875 : CTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACA : 44932 195 : HisLeuLeuGlnLeuAlaAlaSerPhePheValGlyMetAlaIleSerIleProAspAsp : 214 :!! !|||:!! !|||:!!|||!:!!.!!.!! .!! !!!! ! !||| ! ValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThr 44933 : GTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACT : 44992 215 : TyrPheCysAlaLeuLeuPheHisAlaSerAlaGlnPheGluIleLeuGlyLeuGlnIle : 234 !:!.!! !|||:!!.!.|||!.!!!!!.!|||.!!..!! !||| !! !:!!.!! PheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArgAsnGluPhe 44993 : TTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGAAACGAATTC : 45052 235 : GluSerLeu<->ProIleAspGlySerLysSerGlyArgLeuLeuSerGlyPheIleGlu : 253 ! !.!||| !! !||| ! !! !! ! ! ! !|||.!! !.!!:!::!! GlyLysLeuGlnAlaCysAspLysValThrLeuGlnAlaLysLeuGlyLysIleValGln 45053 : GGTAAGCTTCAAGCATGCGATAAAGTAACATTACAGGCGAAGTTGGGGAAAATCGTGCAG : 45112 254 : ArgHisValHisLeuAsnArgMetValSer : 263 !:!|||! !:!!|||||||||.!.|||||| LysHisGluTyrLeuAsnArgPheValSer 45113 : AAACACGAATATCTTAACAGGTTCGTATCA : 45144 vulgar: NvOr36 174 263 . KQ414804.1 44874 45144 + 109 M 63 189 G 0 3 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44875 45144 109 + . gene_id 2 ; sequence NvOr36 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44875 45144 . + . KQ414804.1 exonerate:protein2genome:local exon 44875 45144 . + . insertions 3 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44875 45144 109 + . alignment_id 2 ; Query NvOr36 ; Align 44875 175 189 ; Align 45067 238 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr39PSE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 361 -> 431 Target range: 34378 -> 34671 362 : MetHisSerGluGlyIleSerGluAlaAlaTyrAspCysAspTrpTyrThrLeuProAla : 381 .!.!!.|||..!! !!!:|||.!.:!!||||||!!:! :!!||||||!.!:!! !! !! PheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerPro 34379 : TTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCT : 34436 382 : AsnCysAlaArgGluIleIleProIleMetValArgAlaSerTyrProLeuGlnLeuSer : 401 |||!:! :!!:!! !|||||| !|||.!!:!! !|||||| |||!!! ProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThr 34437 : CCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACT : 34496 402 : AlaGlyLysPhePheTyrLeuSerLeuAsnAlaPheLeuSer >>>> Target Intr : 416 |||||||||||| ! !!!!|||:!!.!. !||| !!!! 83 bp AlaGlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34497 : GCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt................ : 34543 417 : on 1 >>>> IleValLysThrSerPheGlyTyrValSerValLeuLeuAlaValSer : 431 |||:!!||||||:!!.!.||||||:!!||||||||||||.!!|||!!! ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeuThrValThr 34544 : .........agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTCACAGTTACA : 34671 vulgar: NvOr39PSE 361 431 . KQ414804.1 34378 34671 + 120 M 54 162 5 0 2 I 0 79 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34379 34671 120 + . gene_id 1 ; sequence NvOr39PSE ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34379 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34379 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34671 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34671 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34379 34671 120 + . alignment_id 1 ; Query NvOr39PSE ; Align 34379 362 162 ; Align 34624 416 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr46 Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 100 -> 239 Target range: 4456 -> 4042 101 : PheLysSerAlaValLysGluIleGluGluPhePheLysAsnSerSerProLysGluArgTy : 121 !!.:!!!.! !:!!:!!|||!!::!! ! !! !:!!!..:!!!.!||| ! |||||| ! LeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAs 4456 : TTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGA : 4396 122 : rIleLeuAspArgTyrAlaThrThrArgThrPhePheAsnIleTyrIleAlaIleAsnTyrP : 142 !:!!!!!.!.||||||!.!!.!! !!..:::...||| ||| !:!! ! !:!! pValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheT 4395 : CGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTT : 4333 143 : heValAlaIleMetSerPheAsnPheGlyGlnLeuPheLeuLysAspArgProTyrProLeu : 162 :!:!!.!! !!!:! !.!. !.!!|||...|||.!!:!!...||| |||!:!||| ! yrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAsp---ProPheProThr 4332 : ACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGAT---CCTTTTCCAACC : 4276 163 : AsnLeuTrpTyrProPheThrIleLysSerGlnValIleValValIleIleTyrIleHisGl : 183 ||| ! ||||||||| !!:!!!!.! !:!! !:!: ! !||||||!:!!!:||||| AsnAlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHisGl 4275 : AACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCACCA : 4213 184 : nValIleValIleThrHisThrLeuIleLeuIleValPheAspLeuIleValGlnIlePheL : 204 | !.!!||| !! !!!. ! ! !! ! ! !.!.:!!:!!:!! ! !:!:!!.| nSerPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeuLeuL 4212 : ATCGTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTGTTAT : 4150 205 : euTrpThrLeuAlaAlaArgPheGluLeuLeuGlnAlaAspPheLysLysThrAlaSerGlu : 224 || ! !.!!||||||||||||:::|||..!.!!!!:!!.!:!!!...! !..! euLeuPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAspIle 4149 : TGCTATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGATATC : 4090 225 : MetAspLeuLysCysAsnIleGlnLysHisGlnTyrLeuIleArg : 239 |||! !:!!!::!!|||:!!..! !:!! ||| GluThrLeuIleLysSerMetLysLysTyrSerThrValArgArg 4089 : GAAACACTGATTAAGAGTATGAAAAAGTATTCGACTGTGCGGAGG : 4043 vulgar: NvOr46 100 239 . LHQN01020543.1 4456 4042 - 116 M 57 171 G 1 0 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4043 4456 116 - . gene_id 1 ; sequence NvOr46 ; gene_orientation . LHQN01020543.1 exonerate:protein2genome:local cds 4043 4456 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4043 4456 . - . insertions 0 ; deletions 1 LHQN01020543.1 exonerate:protein2genome:local similarity 4043 4456 116 - . alignment_id 1 ; Query NvOr46 ; Align 4457 101 171 ; Align 4286 159 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr35 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 359 -> 408 Target range: 292416 -> 292560 360 : TyrAsnSerArgTrpTyrThrValProLysGlnSerValAlaLysAspValIleProM : 379 |||:!!!!!..!||||||!.!:!!|||!:!!:!!.! |||:::|||:!!:!!! !: TyrAspThrGluTrpTyrAsnLeuProArgArgLys---AlaArgAspIleValLeuV 292417 : TACGATACAGAATGGTACAATCTGCCGAGACGGAAG---GCTCGTGACATCGTTCTGG : 292471 380 : etMetValValSerLysAsnProArgLysLeuThrAlaGlyLysIlePheThrLeuSe : 398 !!:!:!.!:!!!!!|||:!!|||! !||||||||||||||||||||||||..!||||| alLeuAlaIleThrLysHisProIleLysLeuThrAlaGlyLysIlePheValLeuSe 292472 : TGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGGCAAAATATTCGTTCTCTC : 292528 399 : rLeuAlaThrTyrCysSerIleLeuLysSer : 408 |||| !|||!:! !!:!!:!!! !:!!||| rLeuAsnThrPheGlyAlaValArgGluSer 292529 : GTTGAACACTTTTGGCGCTGTACGTGAATCA : 292560 vulgar: NvOr35 359 408 . KQ414889.1 292416 292560 + 113 M 12 36 G 1 0 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292417 292560 113 + . gene_id 1 ; sequence NvOr35 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292417 292560 . + . KQ414889.1 exonerate:protein2genome:local exon 292417 292560 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 292417 292560 113 + . alignment_id 1 ; Query NvOr35 ; Align 292417 360 36 ; Align 292453 373 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr40PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 355 -> 421 Target range: 258468 -> 258735 356 : ArgThrIleGlyThrAlaCysTyrGlySerAspTrpHisLeuLeuThrValAspCysA : 375 !:!! !:!!||| !!.! !||| !!!!||||||:!!! !||| !!! ! ! ! LysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspLysArgI 258469 : AAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAA : 258526 376 : laArgThrIleIleProIleIleAlaArgAlaGlnHisProLeuGlnLeuSerAlaGl : 394 !! ! !:!!||| !:!!|||||||||:!!... !:!!|||:!!!!!||||| leLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleThrAlaGl 258527 : TACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGgg : 258583 395 : yLysPhePheTyrLeuSerLeuAsnAlaPheLeuSer >>>> Target Intron : 407 ||||||||||:::::!|||:!! !!.!!||| !..! 69 bp yLysPhePheHisMetSerIleTyrThrPheSerAsp++ 258584 : aaaattctttcacatGTCCATTTACACATTCAGCGATgt................... : 258624 408 : 1 >>>> ValValLysThrSerPheGlyZedValSerValLeuLeuAlaVal : 421 |||:!!||||||||||||!.! :!!!:!:!!|||! ! !||| ++ValIleLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnVal 258625 : ......agGTAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGTA : 258735 vulgar: NvOr40PSE 355 421 . KQ414889.1 258468 258735 + 108 M 51 153 5 0 2 I 0 65 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258469 258735 108 + . gene_id 1 ; sequence NvOr40PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 258469 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258469 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258735 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258735 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258469 258735 108 + . alignment_id 1 ; Query NvOr40PSE ; Align 258469 356 153 ; Align 258691 407 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr40PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 357 -> 407 Target range: 292401 -> 292551 358 : IleGlyThrAlaCysTyrGlySerAspTrpHisLeuLeuThrValAspCysAlaArgT : 377 |||!.! !|||! !|||! !!!!!!:|||:!! !||| !! ! |||||| IleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgArgLysAlaArgA 292402 : ATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGGCTCGTG : 292459 378 : hrIleIleProIleIleAlaArgAlaGlnHisProLeuGlnLeuSerAlaGlyLysPh : 396 !|||:!!! !:!::!!|||! !.!!:!!||||||:!!:!!|||!!!|||||||||.! spIleValLeuValLeuAlaIleThrLysHisProIleLysLeuThrAlaGlyLysIl 292460 : ACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGGCAAAAT : 292516 397 : ePheTyrLeuSerLeuAsnAlaPheLeuSerVal : 407 .||| !||||||||||||.!!||| !:!!||| ePheValLeuSerLeuAsnThrPheGlyAlaVal 292517 : ATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTA : 292551 vulgar: NvOr40PSE 357 407 . KQ414889.1 292401 292551 + 106 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292402 292551 106 + . gene_id 2 ; sequence NvOr40PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292402 292551 . + . KQ414889.1 exonerate:protein2genome:local exon 292402 292551 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292402 292551 106 + . alignment_id 2 ; Query NvOr40PSE ; Align 292402 358 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr39PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 366 -> 431 Target range: 258474 -> 258738 367 : IleSerGluAlaAlaTyrAspCysAspTrpTyrThrLeuProAlaAsnCysAlaArgG : 386 :!!.!!!!:!.!!.!||| ||||||||| !||||||! !!!. ! !! !! ValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuA 258475 : GTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCG : 258532 387 : luIleIleProIleMetValArgAlaSerTyrProLeuGlnLeuSerAlaGlyLysPh : 405 !::!!||| !:!!!!:!.!|||:!!||| !:!!|||:!!!!!||||||||||| spLeuIleLeuValIleAlaArgSerSerValValValGlnIleThrAlaGlyLysPh 258533 : ATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaatt : 258589 406 : ePheTyrLeuSerLeuAsnAlaPheLeuSer >>>> Target Intron 1 >>>> : 416 ||||:::::!|||:!! !!.!!||| !..! 69 bp ePheHisMetSerIleTyrThrPheSerAsp++ 258590 : ctttcacatGTCCATTTACACATTCAGCGATgt......................... : 258624 417 : IleValLysThrSerPheGlyTyrValSerValLeuLeuAlaValSer : 431 :!!:!!||||||||||||!.!|||:!!!:!:!!|||! ! !|||||| ++ValIleLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnValSer 258625 : agGTAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGTATCG : 258738 vulgar: NvOr39PSE 366 431 . KQ414889.1 258474 258738 + 131 M 49 147 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258475 258738 131 + . gene_id 1 ; sequence NvOr39PSE ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 258475 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258475 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258475 258738 131 + . alignment_id 1 ; Query NvOr39PSE ; Align 258475 367 147 ; Align 258691 416 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr39PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 366 -> 413 Target range: 292401 -> 292542 367 : IleSerGluAlaAlaTyrAspCysAspTrpTyrThrLeuProAlaAsnCysAlaArgG : 386 |||:!!.!.|||:!!|||||| !!:||||||!.!|||||| !... ||||||! IleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgArgLysAlaArgA 292402 : ATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGGCTCGTG : 292459 387 : luIleIleProIleMetValArgAlaSerTyrProLeuGlnLeuSerAlaGlyLysPh : 405 !:|||:!!! !:!::!:!.!! !.!!!.!:!!|||:!!:!!|||!!!|||||||||.! spIleValLeuValLeuAlaIleThrLysHisProIleLysLeuThrAlaGlyLysIl 292460 : ACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGGCAAAAT : 292516 406 : ePheTyrLeuSerLeuAsnAlaPhe : 413 .||| !||||||||||||.!!||| ePheValLeuSerLeuAsnThrPhe 292517 : ATTCGTTCTCTCGTTGAACACTTTT : 292542 vulgar: NvOr39PSE 366 413 . KQ414889.1 292401 292542 + 127 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292402 292542 127 + . gene_id 2 ; sequence NvOr39PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292402 292542 . + . KQ414889.1 exonerate:protein2genome:local exon 292402 292542 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292402 292542 127 + . alignment_id 2 ; Query NvOr39PSE ; Align 292402 367 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr39PSE Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 366 -> 416 Target range: 301886 -> 302036 367 : IleSerGluAlaAlaTyrAspCysAspTrpTyrThrLeuProAlaAsnCysAlaArgG : 386 |||.!!..!|||:!!|||!!: !|||||||||!.!|||||||||!!. ! ||| !! IleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrA 301887 : ATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACG : 301944 387 : luIleIleProIleMetValArgAlaSerTyrProLeuGlnLeuSerAlaGlyLysPh : 405 !::!!|||! !:!!! |||! !:!!..!||||||! !:!!|||!!!|||||||||.! spLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGlyLysIl 301945 : ATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAAT : 302001 406 : ePheTyrLeuSerLeuAsnAlaPheLeuSerIle : 416 ..!! !!||||||||||||.!!||| !|||:!! eIleAspLeuSerLeuAsnThrPheSerSerVal 302002 : AATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: NvOr39PSE 366 416 . KQ414889.1 301886 302036 + 121 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301887 302036 121 + . gene_id 3 ; sequence NvOr39PSE ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301887 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301887 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301887 302036 121 + . alignment_id 3 ; Query NvOr39PSE ; Align 301887 367 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr41 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 166 -> 287 Target range: 806478 -> 806832 167 : AsnLeuProMetGlnThrValCysThrPheAsnAsnAlaAspValLeuLysHisThrA : 186 ||| ::: ||| !|||..!|||..! ! ! :!!! ! ! |||..!. AsnTyrPheLeuAlaThrHisCysValPheGlyProLeuProLeuGlnHisHisValC 806479 : aattatttcttgGCCACGCACTGCGTGTTCGGCCCTTTACCGTTGCAGCATCACGTCT : 806536 187 : laValTyrPheIleGluThrLeuSerPheValTyrLeuAlaValGlyPheIleSerIl : 205 .!|||! .!.:!::!! !:!! !.!! !!!:! !||||||!.! ! !.!!! ysValLeuLeuLeuGlnGlyMetHisIlePhePheAsnAlaValAlaHisCysGlyAs 806537 : GCGTGTTACTGCTGCAAGGGATGCACATTTTCTTCAACGCCGTGGCTCACTGCGGCAA : 806593 206 : eAspLeuLeuPheLeuGlyIleAlaMetHisLeuCysGlyGlnLeuLysIleLeuGln : 224 !||| !||||||!!!.!!:!:.!!||||||||||||||||||!!!:!!||||||:!! nAspGlyLeuPhePheSerLeuThrMetHisLeuCysGlyGlnPheGluIleLeuLys 806594 : CGACGGCCTCTTCTTCAGCCTGACGATGCATCTGTGCGGTCAGTTTGAAATTCTGAAG : 806650 225 : LysGluPheSerGluIleValGlyLysSerThrSerGlnAlaAspCysIleArgTyrV : 244 ! !.!..!.:!!||||||! ! !:!!:!!! !:!! ||| !:! : MetAsnLeuAlaGluIleGluPheGluAlaIleAla---------CysArgLysArgI 806651 : ATGAATCTGGCGGAGATCGAGTTCGAGGCGATCGCT---------TGTCGGAAGCGAA : 806701 245 : alIleSerLeuSerArgArgPheGlnArgValValGluLeuThrAspAspIleArgLy : 263 !! ! !||| !!:!||| ! !:!:!!!.!! !||||||:!!|||:!!..!:! leGlyValLeuValLysArgHisCysLysLeuAlaValLeuThrAsnAspLeuGluGl 806702 : TCGGCGTTCTCGTGAAACGACACTGCAAACTGGCGGTGTTGACCAACGATCTCGAGCA : 806758 264 : sThrPheSerGluIleLeuLeuValAsnPheValValAsnLeuPheLeuIleThrSer : 282 !!:!|||||| !|||:!!||||||.!..!!:!!:!!!:! !!!.|||||| ! ! nSerPheSerMetIleIleLeuValGlnLeuMetMetSerAlaLeuLeuIleCysVal 806759 : GAGCTTCAGTATGATTATTCTGGTGCAACTCATGATGAGTGCGTTGCTAATTTGCGTA : 806815 283 : GlnSerValThrLeu : 287 :!!.!!! !:!!||| GluGlyGluSerLeu 806816 : GAAGGTGAGTCGTTG : 806832 vulgar: NvOr41 166 287 . KQ414940.1 806478 806832 + 125 M 70 210 G 3 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806479 806832 125 + . gene_id 1 ; sequence NvOr41 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 806479 806832 . + . KQ414940.1 exonerate:protein2genome:local exon 806479 806832 . + . insertions 0 ; deletions 3 KQ414940.1 exonerate:protein2genome:local similarity 806479 806832 125 + . alignment_id 1 ; Query NvOr41 ; Align 806479 167 210 ; Align 806689 240 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr36 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 195 -> 307 Target range: 806544 -> 806880 196 : LeuLeuGlnLeuAlaAlaSerPhePheValGlyMetAlaIleSerIleProAspAspT : 215 ||||||||| ! ! !! !|||||| !!.!:!!||| !!!! ! !|||! ! LeuLeuGlnGlyMetHisIlePhePheAsnAlaValAlaHisCysGlyAsnAspGlyL 806545 : CTGCTGCAAGGGATGCACATTTTCTTCAACGCCGTGGCTCACTGCGGCAACGACGGCC : 806602 216 : yrPheCysAlaLeuLeuPheHisAlaSerAlaGlnPheGluIleLeuGlyLeuGlnIl : 234 !|||! !::!||| !.!.||| !!!!!.!||||||||||||||| !:!!.!.:! euPhePheSerLeuThrMetHisLeuCysGlyGlnPheGluIleLeuLysMetAsnLe 806603 : TCTTCTTCAGCCTGACGATGCATCTGTGCGGTCAGTTTGAAATTCTGAAGATGAATCT : 806659 235 : eGluSerLeuProIleAspGlySerLysSerGlyArgLeuLeuSerGlyPheIleGlu : 253 :! !..!:!! !.!!!!:!.!! ! !!! !!!:!! !:!!.!!! !.!!:!::!! uAlaGluIleGluPheGluAlaIleAlaCysArgLysArgIleGlyValLeuValLys 806660 : GGCGGAGATCGAGTTCGAGGCGATCGCTTGTCGGAAGCGAATCGGCGTTCTCGTGAAA : 806716 254 : ArgHisValHisLeuAsnArgMetValSerAlaValGluArgSerPheGluPheValI : 273 |||||| ! ! ||| !:!!..!!:!! !:!!|||!:!||||||....!.:!!| ArgHisCysLysLeuAlaValLeuThrAsnAspLeuGluGlnSerPheSerMetIleI 806717 : CGACACTGCAAACTGGCGGTGTTGACCAACGATCTCGAGCAGAGCTTCAGTATGATTA : 806776 274 : leAlaAlaGlnIlePheCysMetSerIleMetValCysCysLeuGlyPheGlnValLe : 292 || !!.!|||:!!.!. ! :!!:!::!::!!||| !||| ..!:!!!! leLeuValGlnLeuMetMetSerAlaLeuLeuIleCysValGluGlyGluSerLeuPh 806777 : TTCTGGTGCAACTCATGATGAGTGCGTTGCTAATTTGCGTAGAAGGTGAGTCGTTGTT : 806833 293 : uArgMetLeuAspSerAlaAlaGluLysProThrProValGlnIle : 307 ! !!! :!!..!!!! !||| ! ! !|||..!...:!: eGlyLysValSerThrTyrAlaThrPheLysArgProThrSerLeu 806834 : CGGAAAAGTAAGTACCTATGCTACGTTTAAGCGTCCGACAAGCTTG : 806880 vulgar: NvOr36 195 307 . KQ414940.1 806544 806880 + 111 M 112 336 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806545 806880 111 + . gene_id 1 ; sequence NvOr36 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 806545 806880 . + . KQ414940.1 exonerate:protein2genome:local exon 806545 806880 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 806545 806880 111 + . alignment_id 1 ; Query NvOr36 ; Align 806545 196 336 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr33PSE Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 303 -> 379 Target range: 807314 -> 807542 304 : PheLeuPheIleIleSerValIleLeuLeuSerTyrLeuTyrTrpTyrValGlyGluG : 323 |||:!!.!.!!::!:!!!:!!:!::!!! ! !||||||||| |||!.!|||.!. PheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnT 807315 : TTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACA : 807372 324 : lnLeuAsnValLysThrThrGluLeuGlyIleAlaAlaPheAspCysAspTrpPheTh : 342 !|||.!. !::!||| !|||:!!!.! !||||||!:!|||! ! !|||!:! hrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrAr 807373 : CACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCG : 807429 343 : rLeuProThrSerGluValLysSerLeuGlyPheIleLeuLeuArgThrLysAsnPro : 361 !! !! ! ! !! !!.!!:!..!||| !!!.|||:!!! !||| !!!.:::||| gCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerPro 807430 : TTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCT : 807486 362 : LeuAlaLeuThrAlaGlyLysPheCysSerPheThrMetValThrPheCysGlu : 379 ! ! !:!!||||||||||||||| ! !!.!.!.!:!: !!|||||| ||| TyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGlu 807487 : TATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAG : 807542 vulgar: NvOr33PSE 303 379 . KQ414940.1 807314 807542 + 124 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807315 807542 124 + . gene_id 1 ; sequence NvOr33PSE ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807315 807542 . + . KQ414940.1 exonerate:protein2genome:local exon 807315 807542 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807315 807542 124 + . alignment_id 1 ; Query NvOr33PSE ; Align 807315 304 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr34PSE Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 273 -> 324 Target range: 807425 -> 807578 274 : TyrSerSerProAlaSerTyrAlaArgAspLeuIleProIleMetValArgSerAsnV : 293 ||| !!!!!! !!.! ! ||||||||||||:!! !|||!!: !|||.!!||| TyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnS 807426 : TACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATT : 807483 294 : alProValGlnLeuThrAlaGlyLysPhePheAlaLeuSerLeuAsnAlaTyrAlaUn : 312 !||| !!:::!!||||||||||||||| !! !!:!!!:!||| !.!!!:! ! erProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGl 807484 : CGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGA : 807540 313 : kIleLeuLysThrSerAlaGlyTyrIleSerMetLeu : 324 |||||||||.!!|||!.!..!|||:!:|||:!::!! uIleLeuLysAlaSerGlySerTyrLeuSerValMet 807541 : GATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATG : 807578 vulgar: NvOr34PSE 273 324 . KQ414940.1 807425 807578 + 100 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807426 807578 100 + . gene_id 1 ; sequence NvOr34PSE ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807426 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807426 807578 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807426 807578 100 + . alignment_id 1 ; Query NvOr34PSE ; Align 807426 274 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr42PSE Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 105 -> 207 Target range: 806466 -> 806766 106 : ThrAspAlaSerAsnLeuProIleGlnThrValCysSerPheArgAsnLeuThrAspA : 125 |||! ||| ::: ||| !||| !||| !! !||| !! ! ThrAlaArgLeuAsnTyrPheLeuAlaThrHisCysValPheGlyProLeuProLeuG 806467 : ACAGCGagattgaattatttcttgGCCACGCACTGCGTGTTCGGCCCTTTACCGTTGC : 806524 126 : rgGluTyrValIleValTyrValValGlnSerMetSerLeuLeuTyrLeuAlaPheGl : 144 :!.!.:!!||| !|||! :!!:!!|||.!!||| !:!!!!!!:! !||| ! !. lnHisHisValCysValLeuLeuLeuGlnGlyMetHisIlePhePheAsnAlaValAl 806525 : AGCATCACGTCTGCGTGTTACTGCTGCAAGGGATGCACATTTTCTTCAACGCCGTGGC : 806581 145 : yLeuIleGlyValAspValPhePhePheGlyIleValMetHisLeuCysAlaGlnLeu : 163 !! ! !||| !|||! !.!!||||||.!!:!:..!||||||||||||!.!|||!!! aHisCysGlyAsnAspGlyLeuPhePheSerLeuThrMetHisLeuCysGlyGlnPhe 806582 : TCACTGCGGCAACGACGGCCTCTTCTTCAGCCTGACGATGCATCTGTGCGGTCAGTTT : 806638 164 : LysIleLeuGlnIleGluPheAsnThrIleAspLysLeuThrTrpArgLeuAspAsnI : 183 :!!||||||:!!!!:.!..!. !|||!!: ! ! !:!!! ! ! GluIleLeuLysMetAsnLeuAlaGluIleGlu------PheGluAlaIleAlaCysA 806639 : GAAATTCTGAAGATGAATCTGGCGGAGATCGAG------TTCGAGGCGATCGCTTGTC : 806692 184 : leArgLeuMetAlaLeuTyrSerLysLysHisTyrGlnLeuIleMetLeuAlaAsnAs : 202 !:!! !!!:!.!:!! ! !|||::!|||! !:!!||| :!!|||.!!||||| rgLysArgIleGlyValLeuValLysArgHisCysLysLeuAlaValLeuThrAsnAs 806693 : GGAAGCGAATCGGCGTTCTCGTGAAACGACACTGCAAACTGGCGGTGTTGACCAACGA : 806749 203 : pLeuLysThrLysPhe : 207 ||||:!! !!..||| pLeuGluGlnSerPhe 806750 : TCTCGAGCAGAGCTTC : 806766 vulgar: NvOr42PSE 105 207 . KQ414940.1 806466 806766 + 103 M 69 207 G 2 0 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806467 806766 103 + . gene_id 1 ; sequence NvOr42PSE ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 806467 806766 . + . KQ414940.1 exonerate:protein2genome:local exon 806467 806766 . + . insertions 0 ; deletions 2 KQ414940.1 exonerate:protein2genome:local similarity 806467 806766 103 + . alignment_id 1 ; Query NvOr42PSE ; Align 806467 106 207 ; Align 806674 177 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr48 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 134 -> 255 Target range: 1058098 -> 1057735 135 : SerLysIleGlnLeuIleArgArgAsnAlaLysGluHisIleLysValPheSerIl : 153 |||||| :::::::::! !!:!... ! !!!:... !||| !||| ! SerLysGluLysValValLeuGlnArgTyrValAspArgTyrLysTyrPheHisGl 1058098 : tcgaaggaaaaagttgtcCTGCAACGATACGTGGACAGATACAAATACTTTCATGG : 1058044 154 : eLeuAlaLeuLeuPheIleIleValValIleMetTyrValTyrArgAlaLeuSerT : 172 :!! !:!!|||!:: !.!!:!!..!! !!!:!:!||| !!!!.!! !! ! yIleTyrIleLeuTrpCysPheLeuThrThrIlePheValIleSerGlyProLeuT 1058043 : GATTTATATATTATGGTGCTTCCTCACGACCATCTTCGTCATAAGTGGTCCATTGT : 1057987 173 : hrArgProTyrGlnLeuLeuLeuSerGlyTyrTyrProCysThrSerAspSerLeu : 190 ! !||| ! !!!!! ! ! !!.! ||||||! ! ! !!!: ! ! yrSerProGlnThrPheProThrHisAlaIleTyrProPheGlnValGluHisThr 1057986 : ACTCACCACAGACGTTCCCCACTCATGCGATATATCCTTTCCAAGTGGAACATACA : 1057933 191 : IleIleTrpLeuValValPhePheHisGlnCysIleLeuValIleTyrSerProSe : 209 :!:.!! :::|||::::::|||||||||! :!!:!!! !.!! ! :!! !!:! LeuPheLysIleValIleTyrPheHisGlnSerLeuValGlyPheGlnAlaSerAl 1057932 : CTGTTCAagattgttatttatttccatCAGTCGTTAGTTGGTTTTCAGGCGTCCGC : 1057876 210 : rThrPheAlaSerAspSerIleValThrValLeuIlePheAlaAlaIleIleLysL : 228 ! !.!.|||! !|||!!! !:!!.!!:!!|||:!: !||| ! !!:!! aGlyMetAlaIleAspThrGlnIleAlaLeuLeuLeuArgTyrAlaAlaAlaArgP 1057875 : TGGTATGGCCATCGACACTCAAATTGCTCTTCTTCTGCGATACGCGGCTGCCAGGT : 1057819 229 : euGlnLysIleArgProArgPheArgAsnIleGluAsnTyrAlaGlnLeuValGly : 246 !!:!! !:!: !! !..!.!.|||||| !.!.!.!:!!..!:!!!!! !!.! heGluLeuLeuGlyAsnGluMetArgAsnAlaAsnThrHisCysGluPheAsnAla 1057818 : TCGAGCTATTGGGAAACGAGATGCGAAATGCAAATACTCACTGTGAATTCAATGCC : 1057765 247 : CysIleAsnGluHisGlnHisIleIle : 255 ||||||.!.:!!|||....!.:!!:!! CysIleGluLysHisSerGluLeuLeu 1057764 : TGCATAGAGAAGCACAGTGAACTTCTC : 1057736 vulgar: NvOr48 134 255 . KQ414618.1 1058098 1057735 - 101 M 121 363 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057736 1058098 101 - . gene_id 1 ; sequence NvOr48 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1057736 1058098 . - . KQ414618.1 exonerate:protein2genome:local exon 1057736 1058098 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057736 1058098 101 - . alignment_id 1 ; Query NvOr48 ; Align 1058099 135 363 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr58 Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 29 -> 119 Target range: 1063113 -> 1062840 30 : IleLeuLeuValIleLysPheAlaAlaMetTyrLeuAlaIleTrpProLeuAspSe : 48 :!!|||! !:!!:!!:!!!!.|||!.!! !!:! !..!! !|||||||||||||| ValLeuHisIleLeuGluLeuAlaGlyArgPheThrCysThrTrpProLeuAspSe 1063113 : GTACTTCATATACTAGAATTGGCTGGAAGGTTCACGTGTACCTGGCCGTTAGATTC : 1063059 49 : rSerGlyLysHisTrpAsnThrAlaPhe<->AspCysLeuTrpTrpPheTyrValV : 66 |!:!.!!!.. ! ! .!...!!.!||| :!! !! !||| ! ||| :!!: rAsnSerSerLysArgGluValValPheArgAsnValArgTrpGlyPheThrIleL 1063058 : TAACAGCAGTAAAAGAGAAGTTGTCTTTCGTAACGTTCGATGGGGTTTCACGATAC : 1063002 67 : alAsnAsnValLeuValIleIleProThrLeuLeuAlaPheTyrSerSerArgArg : 84 !!||| :!!|||:!!:!:||| !! !:!!||||||...::: |||..! euAsnValIleLeuLeuLeuIleSerLeuIleLeuAlaIlePheHisPheArgAsn 1063001 : TAAACGTGATATTACTACTGATATCCTTGATACTcgcgatttttcactttcgaaaC : 1062948 85 : AspIleIleAlaAlaMetPheSerTrpLeuGluIleLeuAlaLeuLeuGluAlaLe : 103 |||||| ||| ::: ! !|||!!: !||||||||||||!.!|| AspIleThrIleLeuMetLysThrIleSerGluMetThrAlaLeuLeuGluValLe 1062947 : GACATaactattttaatgaaaaccaTCTCCGAGATGACTGCTCTGCTGGAGGTGTT : 1062891 104 : uIleIleLeuAlaAsnPheArgTyrTyrArgSerArgMetGlnProIle : 119 |!!: !:!! ! !! !!:! ! !!!:!!!:!:!:||| ||| uMetAspMetIleLeuCysLysMetLysSerAlaGlnLeuGlnValIle 1062890 : GATGGACATGATTCTCTGCAAAATGAAGAGTGCACAGCTTCAggttata : 1062841 vulgar: NvOr58 29 119 . KQ414618.1 1063113 1062840 - 110 M 28 84 G 0 3 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1062841 1063113 110 - . gene_id 1 ; sequence NvOr58 ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1062841 1063113 . - . KQ414618.1 exonerate:protein2genome:local exon 1062841 1063113 . - . insertions 3 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1062841 1063113 110 - . alignment_id 1 ; Query NvOr58 ; Align 1063114 30 84 ; Align 1063027 58 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr61 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 322 -> 378 Target range: 3150860 -> 3151028 323 : ValThrGlnSerGluSerIleValGlnAlaValTyrSerSerSerTrpTyrAspMe : 341 :!!! !||||||! ..!||||||!::.!!:!!!:!..!! !..!||| !:! IleIleGlnSerValGluIleValArgThrIlePheGluMetAspTrpIleProLe 3150861 : ATCATTCAGAGCGTCGAGATTGTGCGCACGATCTTCGAAATGGATTGGATACCTCT : 3150915 342 : tAspSerSerValLysLysAspIleValPheValMetMetArgAlaLysIleProL : 360 :.!.!:!.!!:!!|||||||||:!::!! !!||| !! ||||||! !||||||: uGlnAsnGlyIleLysLysAspLeuIleValValAlaArgArgAlaMetIleProI 3150916 : CCAGAACGGTATCAAGAAGGATTTGATAGTCGTGGCGAGAAGAGCGATGATCCCGA : 3150972 361 : euHisIleThrAlaGlyLysPhePheCysValThrArgAsnThrIleValGlnLeu : 378 !!.!.:!:|||..!!.! ! .!.||| !:!! ! !||||||.!!|||...:!! leGluLeuThrCysAlaTyrMetPheThrMetAspLeuAsnThrPheValSerVal 3150973 : TCGAGTTGACCTGCGCGTACATGTTCACCATGGACTTGAACACCTTCGTCAGCGTC : 3151026 vulgar: NvOr61 322 378 . KQ414646.1 3150860 3151028 + 105 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150861 3151028 105 + . gene_id 1 ; sequence NvOr61 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150861 3151028 . + . KQ414646.1 exonerate:protein2genome:local exon 3150861 3151028 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150861 3151028 105 + . alignment_id 1 ; Query NvOr61 ; Align 3150861 323 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr61 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 325 -> 389 Target range: 1395323 -> 1395902 326 : SerGluSerIleValGlnAlaValTyrSerSerSerTrpTyrAspMetAspSerSe : 344 ||| !|||||| !.!.|||!.!||||||||| !!|||||| !:!!||| !!.. SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 345 : rValLysLysAspIleValPheValMetMetArgAlaLysIleProLeuHisIleT : 363 !! !!:! ! !|||:!!.!!:!!|||!!:|||:!!:!!! !! !||| |||| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 364 : hrAlaGlyLysPhePheCysValThrArgAsnThrIleValGln >>>> Targe : 378 ||||||||||||||.!. !:!!:!! !.!. !.!!!.!.!. hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsn++ 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATgt.......... : 1395482 379 : t Intron 1 >>>> LeuLeuLysThrSerValSerTyrLeuSerValLeu : 389 387 bp :::||||||.!!|||!.!||||||:!!||||||||| ++IleLeuLysAlaSerAlaSerTyrIleSerValLeu 1395483 : ...............agatcTTAAAGGCTTCTGCATCGTACATATCTGTACTG : 1395902 vulgar: NvOr61 325 389 . KQ414716.1 1395323 1395902 + 109 M 52 156 5 0 2 I 0 383 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395902 109 + . gene_id 1 ; sequence NvOr61 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1395324 1395479 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395479 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1395480 1395481 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1395480 1395866 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1395865 1395866 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1395867 1395902 . + . KQ414716.1 exonerate:protein2genome:local exon 1395867 1395902 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395902 109 + . alignment_id 1 ; Query NvOr61 ; Align 1395324 326 156 ; Align 1395867 378 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr61 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 325 -> 389 Target range: 1387619 -> 1387946 326 : SerGluSerIleValGlnAlaValTyrSerSerSerTrpTyrAspMetAspSerSe : 344 |||||| !!|||..!|||:!:||||||::: |||||||||:!: ! !! ! SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 345 : rValLysLysAspIleValPheValMetMetArgAlaLysIleProLeuHisIleT : 363 !! ! ::: ::::::...:::::::::|||:!!:!!! ! !||| :!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 364 : hrAlaGlyLysPhePheCysValThrArgAsnThrIleValGln >>>> Targe : 378 |||||||||||||| ! !:!!:!! ! !.!!.!!!.!.!. hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt.......... : 1387778 379 : t Intron 1 >>>> LeuLeuLysThrSerValSerTyrLeuSerValLeu : 389 135 bp :::||||||.!!|||!.!||||||:!!||||||||| ++MetLeuLysAlaSerAlaSerTyrValSerValLeu 1387779 : ...............agatgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTTG : 1387946 vulgar: NvOr61 325 389 . KQ414716.1 1387619 1387946 + 104 M 52 156 5 0 2 I 0 131 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387946 104 + . gene_id 2 ; sequence NvOr61 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387946 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387946 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387946 104 + . alignment_id 2 ; Query NvOr61 ; Align 1387620 326 156 ; Align 1387911 378 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr61 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 325 -> 390 Target range: 1345564 -> 1345837 326 : SerGluSerIleValGlnAlaValTyrSerSerSerTrpTyrAspMetAspSerSe : 344 |||.....!!!: !|||||| !|||! !|||!:!|||||||||:!: ..!!. SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 345 : rValLysLysAspIleValPheValMetMetArgAlaLysIleProLeuHisIleT : 363 ! !! !::!...:!!:!!||| !!!: |||:!!:!!! |||! !:!!:!!| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 364 : hrAlaGlyLysPhePheCysValThrArgAsnThrIleValGln >>>> Targe : 378 ||||||||||||||!:! !!:!! !.!.|||.!!! ! hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIle++ 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCgt.......... : 1345723 379 : t Intron 1 >>>> LeuLeuLysThrSerValSerTyrLeuSerValLeuArg : 390 78 bp :!!:!!|||.!!|||:!!:!!|||||||||||||||!:! ++IleValLysAlaSerMetAlaTyrLeuSerValLeuLys 1345724 : ...............agATAGTAAAAGCGTCGATGGCCTATCTTTCCGTTCTGAAA : 1345835 vulgar: NvOr61 325 390 . KQ414782.1 1345564 1345837 + 123 M 52 156 5 0 2 I 0 74 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345837 123 + . gene_id 1 ; sequence NvOr61 ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345565 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345837 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345837 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345837 123 + . alignment_id 1 ; Query NvOr61 ; Align 1345565 326 156 ; Align 1345799 378 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr61 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 322 -> 389 Target range: 34375 -> 34659 323 : ValThrGlnSerGluSerIleValGlnAlaValTyrSerSerSerTrpTyrAspMetAsp : 342 :!! !||||||..!..!!!: !.!.:!!!.!|||..!|||!:!||||||:!!:!:... IlePheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSer 34376 : ATATTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCA : 34433 343 : SerSerValLysLysAspIleValPheValMetMetArgAlaLysIleProLeuHisIle : 362 !! !!! ! ||| !:!!:!!|||:!!||| |||.!! !|||||| !:!: ProProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeu 34434 : CCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTG : 34493 363 : ThrAlaGlyLysPhePheCysValThrArgAsnThrIleValGln >>>> Target I : 378 ||||||||||||||| ! ! !!:!!! !.!.! !.!! ! 83 ThrAlaGlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34494 : ACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt............. : 34543 379 : ntron 1 >>>> LeuLeuLysThrSerValSerTyrLeuSerValLeu : 389 bp :::|||||||||:!!:!!.!!||||||||||||||| ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeu 34544 : ............agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTC : 34659 vulgar: NvOr61 322 389 . KQ414804.1 34375 34659 + 109 M 55 165 5 0 2 I 0 79 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34376 34659 109 + . gene_id 1 ; sequence NvOr61 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34376 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34376 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34659 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34659 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34376 34659 109 + . alignment_id 1 ; Query NvOr61 ; Align 34376 323 165 ; Align 34624 378 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr61 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 320 -> 371 Target range: 51876 -> 52029 321 : TyrLeuValThrGlnSerGluSerIleValGlnAlaValTyrSerSerSerTrpTyrAsp : 340 :::...... ||||||! ..!|||!.!.!.|||!.!|||..!|||..!||||||:!! PhePheThrPheGlnSerValGluIleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsn 51877 : ttcttcacttttcaGAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAATGGTACAAT : 51934 341 : MetAspSerSerValLysLysAspIleValPheValMetMetArgAlaLysIleProLeu : 360 :!!..! !!!.! ! !||| :!!:!!.!!:!!||| ||||||!:!:!!|||||| LeuSerProLysAsnAlaLysLeuLeuLeuIleIleMetArgArgAlaArgLeuProLeu 51935 : TTGTCTCCGAAAAATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGTTACCTCTA : 51994 361 : HisIleThrAlaGlyLysPhePheCysValThr : 371 !!.||||||||||||!:!||| ! ! !!||| GlnIleThrAlaGlyArgPheAlaThrPheThr 51995 : CAAATCACTGCAGGTAGATTTGCTACTTTCACT : 52029 vulgar: NvOr61 320 371 . KQ414804.1 51876 52029 + 106 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51877 52029 106 + . gene_id 2 ; sequence NvOr61 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 51877 52029 . + . KQ414804.1 exonerate:protein2genome:local exon 51877 52029 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51877 52029 106 + . alignment_id 2 ; Query NvOr61 ; Align 51877 321 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr60 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 350 -> 395 Target range: 1233381 -> 1233246 351 : TyrAspSerTyrTrpTyrLysLeuProAlaLysLeuArgArgAspLeuTyrPheVa : 369 |||..!||| |||||||||:!!|||||||||!!!!:!|||! :!!||| :! TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMe 1233381 : TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGAT : 1233327 370 : lThrMetArgAlaAsnLysProIleTyrPheMetAlaGlyHisPheTyrAlaMetA : 388 ! !!!:|||||| |||||| ! !!!.! |||||| !!.|||! !|||| tGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetA 1233326 : GCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGA : 1233270 389 : snIleGluAsnPheMetAsnIle : 395 ||!!:||||||||| |||:!! snMetGluAsnPheAlaAsnVal 1233269 : ACATGGAGAACTTTGCAAACGTT : 1233247 vulgar: NvOr60 350 395 . KQ414851.1 1233381 1233246 - 126 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233247 1233381 126 - . gene_id 1 ; sequence NvOr60 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1233247 1233381 . - . KQ414851.1 exonerate:protein2genome:local exon 1233247 1233381 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233247 1233381 126 - . alignment_id 1 ; Query NvOr60 ; Align 1233382 351 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr60 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 350 -> 395 Target range: 1228545 -> 1228410 351 : TyrAspSerTyrTrpTyrLysLeuProAlaLysLeuArgArgAspLeuTyrPheVa : 369 |||..!||| |||||||||:!! !!||||||!!!!:!|||! :!!|||.!.:! TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 370 : lThrMetArgAlaAsnLysProIleTyrPheMetAlaGlyHisPheTyrAlaMetA : 388 ! !!!:|||||| |||||| ! !!!.! |||||| !!.|||! !|||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 389 : snIleGluAsnPheMetAsnIle : 395 ||!!:||||||||| |||:!! snMetGluAsnPheAlaAsnVal 1228433 : ACATGGAGAACTTTGCAAACGTT : 1228411 vulgar: NvOr60 350 395 . KQ414851.1 1228545 1228410 - 120 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1228545 120 - . gene_id 2 ; sequence NvOr60 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228411 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1228545 120 - . alignment_id 2 ; Query NvOr60 ; Align 1228546 351 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr60 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 350 -> 395 Target range: 1242796 -> 1242661 351 : TyrAspSerTyrTrpTyrLysLeuProAlaLysLeuArgArgAspLeuTyrPheVa : 369 |||:!!||| ||||||:!! !|||!.! !:!!!:!!:! |||:!!.!.|| TyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIleVa 1242796 : TATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATATAGT : 1242742 370 : lThrMetArgAlaAsnLysProIleTyrPheMetAlaGlyHisPheTyrAlaMetA : 388 | !!!:|||:!!..!|||||| ! ! !!.:!:|||||| !!.|||! !|||| lGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluMetA 1242741 : ACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAATGA : 1242685 389 : snIleGluAsnPheMetAsnIle : 395 |||||||||||||| ::::!! snIleGluAsnPheGlySerVal 1242684 : ACATTGAGAATTTTGGATCAGTA : 1242662 vulgar: NvOr60 350 395 . KQ414851.1 1242796 1242661 - 108 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242662 1242796 108 - . gene_id 3 ; sequence NvOr60 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1242662 1242796 . - . KQ414851.1 exonerate:protein2genome:local exon 1242662 1242796 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242662 1242796 108 - . alignment_id 3 ; Query NvOr60 ; Align 1242797 351 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr60 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 185 -> 293 Target range: 806487 -> 806802 186 : MetArgThrGlyCysMetPheAlaGlyTyrArgAspGluIleTyrGlySerLeuTyrV : 205 ::: !||| !|||:!!|||!.! !! ! ! :!! !:!!! !!!!:!!! : LeuAlaThrHisCysValPheGlyProLeuProLeuGlnHisHisValCysValLeuL 806488 : ttgGCCACGCACTGCGTGTTCGGCCCTTTACCGTTGCAGCATCACGTCTGCGTGTTAC : 806545 206 : alTyrGluSerValMetIleMetIleThrAlaHisGlyAsnValGlyCysAspValLe : 224 !! :!!.!!:!! |||.!..!!!.!||| !.!:!! !||| !|||! !|| euLeuGlnGlyMetHisIlePhePheAsnAlaValAlaHisCysGlyAsnAspGlyLe 806546 : TGCTGCAAGGGATGCACATTTTCTTCAACGCCGTGGCTCACTGCGGCAACGACGGCCT : 806602 225 : uPhePheIleLeuAlaMetHisLeuCysGlyGlnIleGluLeuLeuLysThrAspVal : 243 |||||||! !|||.!!||||||||||||||||||.!!|||:!!||||||! !:!!:!! uPhePheSerLeuThrMetHisLeuCysGlyGlnPheGluIleLeuLysMetAsnLeu 806603 : CTTCTTCAGCCTGACGATGCATCTGTGCGGTCAGTTTGAAATTCTGAAGATGAATCTG : 806659 244 : LeuLysIleGlyGluAspGluLysValProGlyGluTrpLysAsnLysIleValGluC : 263 !:!!||| ||| !||| !:!! ! !! ::!!!.::!|||! !! AlaGluIle---GluPheGluAlaIle------AlaCysArgLysArgIleGlyValL 806660 : GCGGAGATC---GAGTTCGAGGCGATC------GCTTGTCGGAAGCGAATCGGCGTTC : 806710 264 : ysValHisArgHisIleArgLeuLeuGlyMetAlaLysAlaLeuAsnLysValValSe : 282 !||| ! |||||| !!:!||| !! !:!!.!!!!.! !|||.!.:!! ! !!|| euValLysArgHisCysLysLeuAlaValLeuThrAsnAspLeuGluGlnSerPheSe 806711 : TCGTGAAACGACACTGCAAACTGGCGGTGTTGACCAACGATCTCGAGCAGAGCTTCAG : 806767 283 : rGlyValLeuValIleGlnLeuLeuLeuAsnAla : 293 | !:!!:!!:!!:!:||||||:!!:!!!:!||| rMetIleIleLeuValGlnLeuMetMetSerAla 806768 : TATGATTATTCTGGTGCAACTCATGATGAGTGCG : 806802 vulgar: NvOr60 185 293 . KQ414940.1 806487 806802 + 107 M 61 183 G 1 0 M 5 15 G 2 0 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806488 806802 107 + . gene_id 1 ; sequence NvOr60 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 806488 806802 . + . KQ414940.1 exonerate:protein2genome:local exon 806488 806802 . + . insertions 0 ; deletions 3 KQ414940.1 exonerate:protein2genome:local similarity 806488 806802 107 + . alignment_id 1 ; Query NvOr60 ; Align 806488 186 183 ; Align 806671 248 15 ; Align 806686 255 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr61 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 284 Query range: 178 -> 394 Target range: 806523 -> 807593 179 : LysTyrTyrProIleIleMetAlaIleGlnTyrIleGlnCysMetTyrCysCysThrS : 198 :!!:!!:!! ! !:!::!: !:!:||| !!:!!. !.!.!:! !..!..!: GlnHisHisValCysValLeuLeuLeuGlnGlyMetHisIlePhePheAsnAlaValA 806524 : CAGCATCACGTCTGCGTGTTACTGCTGCAAGGGATGCACATTTTCTTCAACGCCGTGG : 806581 199 : erGlyAlaCysThrAspCysPhePhePheGlyLeuValPheHisLeuCysAlaGlnPh : 217 !! !..! !!!.!||| !!.!!||||||.!!|||..!.!.|||||||||!.!||||| laHisCysGlyAsnAspGlyLeuPhePheSerLeuThrMetHisLeuCysGlyGlnPh 806582 : CTCACTGCGGCAACGACGGCCTCTTCTTCAGCCTGACGATGCATCTGTGCGGTCAGTT : 806638 218 : eGluIleLeuLysIleLysTrpGluArgLeuGlyThrLysAspPheGlyValThrAla : 236 |||||||||||||!!: !.!|||!.! !! !!:|||! !!.!! !||| eGluIleLeuLysMet---------AsnLeuAlaGluIleGluPheGluAlaIleAla 806639 : TGAAATTCTGAAGATG---------AATCTGGCGGAGATCGAGTTCGAGGCGATCGCT : 806686 237 : ValHisAspArgValLysValAsnAlaLeuIleAlaArgHisLysGluLeuValLysL : 256 !!.. ! |||:!! ||| |||:!: !|||||| :!!|||!.! !| CysArgLysArgIleGlyVal------LeuValLysArgHisCysLysLeuAlaValL 806687 : TGTCGGAAGCGAATCGGCGTT------CTCGTGAAACGACACTGCAAACTGGCGGTGT : 806740 257 : euGlyGluAsnLeuGluSerGlyPheAsnAsnThrIleLeuValGlnLeuMetIleSe : 275 || !.!.:!!||||||..!.!!|||!:!! ! !||||||||||||||||||!!:|| euThrAsnAspLeuGluGlnSerPheSerMetIleIleLeuValGlnLeuMetMetSe 806741 : TGACCAACGATCTCGAGCAGAGCTTCAGTATGATTATTCTGGTGCAACTCATGATGAG : 806797 276 : rIleValLeuIleCysMetSer{G} >>>> Target Intron 1 >>>> {ly} : 283 | :!!|||||||||:!:..!{|} 437 bp {||} rAlaLeuLeuIleCysValGlu{G}++ ++{ly} 806798 : TGCGTTGCTAATTTGCGTAGAA{G}gt.........................ag{GT} : 807259 284 : CysSerIleLeuValAlaIleMetArgAsnAspHisValThrMetLeuIleSerThrA : 303 ! ! !.!!|||||||||:!:! ! !!!.|||:!!|||.!! |||! ||| ! PheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheV 807260 : TTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCG : 807318 304 : snSerIleSerPheMetValThrGluThrLeuIleTyrGlyTyrAlaSerAspTyrLe : 322 ! !!!: ! !:!!:!!! !:!! !! !:!!|||!.!||||||.!!:!! || alLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLe 807319 : TTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACT : 807375 323 : uValThrGlnSerGluSerIleValGlnAlaValTyrSerSerSerTrpTyrAspMet : 341 |! !:!!!:!!!!|||..!|||!.!||||||!.!|||..!||| !|||||| ! uGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCys 807376 : CGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGC : 807432 342 : AspSerSerValLysLysAspIleValPheValMetMetArgAlaLysIleProLeuH : 361 !!.!! !!.! !:!|||:!!:!!!!.:!!!!: |||!.!!!. |||! !! HisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrA 807433 : CACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATC : 807492 362 : isIleThrAlaGlyLysPhePheCysValThrArgAsnThrIleValGlnLeuLeuLy : 380 .!|||||||||||||||||| !! :!!!.!! ! !|||.!! !:!!:!!||||| rgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLy 807493 : GTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAA : 807549 381 : sThrSerValSerTyrLeuSerValLeuArgLeuThrLeuGlu : 394 |.!!|||! !|||||||||||||||:!!!:!:!!! !:!!!!: sAlaSerGlySerTyrLeuSerValMetLysValMetMetAsp 807550 : AGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: NvOr61 178 394 . KQ414940.1 806523 807593 + 284 M 44 132 G 3 0 M 18 54 G 2 0 M 37 111 S 0 1 5 0 2 I 0 433 3 0 2 S 1 2 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806524 807593 284 + . gene_id 1 ; sequence NvOr61 ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 806524 806821 . + . KQ414940.1 exonerate:protein2genome:local exon 806524 806821 . + . insertions 0 ; deletions 5 KQ414940.1 exonerate:protein2genome:local splice5 806822 806823 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 806822 807258 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 807257 807258 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 807259 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807259 807593 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 806524 807593 284 + . alignment_id 1 ; Query NvOr61 ; Align 806524 179 132 ; Align 806656 226 54 ; Align 806710 246 111 ; Align 807261 284 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr76 Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 302 Query range: 261 -> 396 Target range: 1307121 -> 1306556 262 : GlnCysIleGlnTyrHisGlnGlnMetIle{Ly} >>>> Target Intron 1 : 272 :!!||||||!:::!!||||||!:!||||||{!!} 169 bp LysCysIleArgHisHisGlnArgMetIle{As}++ 1307121 : AAATGCATTCGTCATCACCAACGAATGATA{AA}gt.................... : 1307087 273 : >>>> {s}PheAlaGluGluValArgSerLeuLeuSerProIleIlePheValG : 288 {.} ! !.!.!.!::|||...:::|||...:::||||||:!!||||||| ++{n}ValValAsnAspValAsnAsnLeuPheThrProIleValPheValG 1307086 : .....ag{C}GTGGTGAATGatgtgaataatttatttactccCATCGTTTTCGTAC : 1306874 289 : lnLeuLeuThrSerGlyLeuGluIleCysLeuSerGlyTyrAlaValIleValAsn : 306 |||||||||||||||||:!!! !|||||||||||||||!:!||||||.!!! !||| lnLeuLeuThrSerGlyIleValIleCysLeuSerGlyPheAlaValPheAspAsn 1306873 : AACTTCTTACAAGCGGAATAGTAATTTGTTTAAGTGGATTCGCGGTTTTCGATAAC : 1306820 307 : SerAspAlaGlyAsnTyrGlyAspLeuValLysCysThrGlyTyrPheLeuSerVa : 325 |||||| !!!.! |||:!!:!!|||! !..!..!|||!!.! !|||:! ---AspAlaArgThr------AspIleLeuLysTyrValSerTyrLeuSerSerIl 1306819 : ---GACGCCCGTACC------GATATTCTGAAATACGTATCTTATTTGTCCTCGAT : 1306772 326 : lPheIleGlnLeuIleIleTrpCysTrpProGlyGlnIleLeuIleGlnAspSerS : 344 !!:::!:||||||:!::!!||||||! !||||||:!!||||||:!!|||!!:|||! eTrpLeuGlnLeuLeuLeuTrpCysLeuProGlyGluIleLeuValGlnGluSerL 1306771 : TTGGTTGCAACTTTTGTTATGGTGTTTGCCCGGTGAAATTCTCGTTCAAGAGAGTT : 1306715 345 : erGluIleGlyArgIleValLeuHisAspLeuProTrpTrpAspMetAlaThrGlu : 362 !|||||||||!.!:!!|||! ! :!!:!!||||||!:::!!:!! !! !! euGluIleGlyHisValValTyrLeuAsnValProTrpTyrAsnLeuProProIle 1306714 : TAGAAATAGGACACGTAGTCTACTTAAATGTACCATGGTACAATTTGCCGCCAATT : 1306661 363 : GlnGlnArgGlnPheValPheValIlePheArgThrGlnLysGluCysGlnIleTh : 381 ! ||||||:!!.!! !.!.:!!|||.!!|||.!!|||:!! ! |||...||||| TyrGlnArgLysLeuCysMetMetIleLeuArgAlaGlnGlnTyrCysSerIleTh 1306660 : TACCAGAGAAAACTTTGCATGATGATCCTTAGGGCACAACAATATTGCAGCATCAC : 1306604 382 : rAlaLeuGlyPheGlnValMetSerMetSerLysLeuThrAspVal : 396 ||||||| !|||!:!..!:!!|||!!: !! !||||||..!||| rAlaLeuThrPheArgThrLeuSerIleHisThrLeuThrSerVal 1306603 : GGCATTAACGTTTCGAACGTTGTCTATTCACACGTTAACGAGCGTG : 1306557 vulgar: NvOr76 261 396 . KQ414608.1 1307121 1306556 - 302 M 10 30 S 0 2 5 0 2 I 0 165 3 0 2 S 1 1 M 34 102 G 1 0 M 4 12 G 2 0 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1306557 1307121 302 - . gene_id 1 ; sequence NvOr76 ; gene_orientation + KQ414608.1 exonerate:protein2genome:local cds 1307090 1307121 . - . KQ414608.1 exonerate:protein2genome:local exon 1307090 1307121 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1307088 1307089 . - . intron_id 1 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1306921 1307089 . - . intron_id 1 KQ414608.1 exonerate:protein2genome:local splice3 1306921 1306922 . - . intron_id 0 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1306557 1306920 . - . KQ414608.1 exonerate:protein2genome:local exon 1306557 1306920 . - . insertions 0 ; deletions 3 KQ414608.1 exonerate:protein2genome:local similarity 1306557 1307121 302 - . alignment_id 1 ; Query NvOr76 ; Align 1307122 262 30 ; Align 1306920 273 102 ; Align 1306818 308 12 ; Align 1306806 314 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr76 Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 297 Query range: 7 -> 178 Target range: 1308245 -> 1307653 8 : SerSerIleAspSerPheLeuTrpProAsnArgTyrThrLeuGluPheLeuGlyPh : 26 !!!|||||||||! !!:!:!! ||||||!:! ! !! !! .!. !||| ! ThrSerIleAspTyrTyrIleLeuProAsnLysIleLeuCysGlyMetAlaGlyVa 1308245 : ACGTCGATCGACTATTATATACTACCGAATAAAATCCTGTGCGGTATGGCCGGTGT : 1308191 27 : eTrpProProGluProGlyThrSerSerIleSerLysTyrPheAlaAlaPheArgI : 45 !|||||| !!!: ! !!:!|||!!! !!!!||| |||||| !||||||: lTrpProIleAspGluLysSerSerThrArgThrLysLeuPheAlaTyrPheArgL 1308190 : CTGGCCTATCGACGAGAAAAGTTCAACGCGTACCAAACTATTCGCATACTTTCGGC : 1308134 46 : leValPheSerIleLeuAlaIleGlyPheLeuPheValProGluIleMetMetVal : 63 !::!!|||.!!:!!:!!|||:!!..! !:!!!!.||||||||||||||||||||| euIlePheGlyLeuValAlaLeuAsnSerMetLeuValProGluIleMetMetVal 1308133 : TGATATTCGGATTAGTGGCACTCAATAGCATGTTAGTGCCAGAAATTATGATGGTA : 1308080 64 : ValValPheTrpGlyAspIleThrValLeuThr{G} >>>> Target Intron : 75 :!! ! !||||||:!!:!!! !:!!|||.!!{|} 82 bp IleSerAsnTrpGlyAsnLeuArgIleLeuAla{G}+- 1308079 : ATATCGAATTGGGGCAACTTAAGGATCCTAGCA{G}gc.................. : 1308041 76 : 1 >>>> {ly}ValGlyCysValSerThrThrLeuAlaGlnLeuAsnPheLysM : 90 {||}||||||||||||! !|||||||||!.!|||! ! ||||||! ++{ly}ValGlyCysValLeuThrThrLeuGlyGlnSerLeuPheLysT 1308040 : .......ag{GA}GTAGGATGCGTTTTAACAACACTCGGGCAATCGTTATTCAAAA : 1307917 91 : etLeuTyrValLeuAlaArgArgArgArgPheCysArgAlaTyrArgLysThrArg : 108 !:!!|||:!!:!! !|||||| !!:! !! !||| !||| !:!!! !||| hrIleTyrLeuIleMetArgArgAspLysThrTyrArgLeuTyrTyrGluIleArg 1307916 : CGATTTACCTAATAATGAGAAGGGATAAAACCTACAGACTTTACTACGAAATACGT : 1307863 109 : GluLeuTrpSerMetThrAspHisGluSerGluLeuArgLysGlyLeuGluLysLe : 127 !!:|||||| ! |||||| !! !.!||| |||:!!..!!!!|||!!.|| AspLeuTrpHisSerThrAspAspProLysGlu---ArgGlnAsnPheGluAsnLe 1307862 : GATCTGTGGCATTCTACCGACGATCCCAAAGAG---AGACAGAACTTCGAAAATCT : 1307809 128 : uAlaGlyGlnAlaLysLysTyrSerIleAlaPhePhePheThrCysPheCysAsnA : 146 |||| ! !|||!:!! ! !!!!|||!.!|||!:!! .!!|||.!.!! ||| uAlaTyrTrpAlaArgThrIleThrIleValPheTyrSerAlaCysMetTrpAsnV 1307808 : CGCTTATTGGGCAAGAACAATTACAATAGTCTTTTACTCGGCCTGCATGTGGAACG : 1307752 147 : snIleSerPheThrThrLeuSerValValValTrpLeuAsnTyrAsnAlaGlnGlu : 164 .!!!!!|||||| ! !:!!..! !! !!::!!!! !.!. !.!. alPheThrPheThrPheAlaAlaThrHisAspTyrPheMetIleGluTyrAsnIle 1307751 : TGTTCACATTCACGTTTGCTGCGACCCACGATTATTTCATGATCGAATACAACATC : 1307698 165 : AsnLysSerLeuLeuGluArgArgLeuProPheAspValTrp : 178 !:!!!.:!! ! !...!:!!.!|||||||||!!:|||||| SerAsnAlaGluLysSerLysHisLeuProPheGluValTrp 1307697 : AGCAACGCTGAAAAGAGCAAACACTTGCCCTTCGAAGTCTGG : 1307654 vulgar: NvOr76 7 178 . KQ414608.1 1308245 1307653 - 297 M 67 201 S 0 1 5 0 2 I 0 78 3 0 2 S 1 2 M 44 132 G 1 0 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1307654 1308245 297 - . gene_id 2 ; sequence NvOr76 ; gene_orientation + KQ414608.1 exonerate:protein2genome:local cds 1308044 1308245 . - . KQ414608.1 exonerate:protein2genome:local exon 1308044 1308245 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1308042 1308043 . - . intron_id 1 ; splice_site "GC" KQ414608.1 exonerate:protein2genome:local intron 1307962 1308043 . - . intron_id 1 KQ414608.1 exonerate:protein2genome:local splice3 1307962 1307963 . - . intron_id 0 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1307654 1307961 . - . KQ414608.1 exonerate:protein2genome:local exon 1307654 1307961 . - . insertions 0 ; deletions 1 KQ414608.1 exonerate:protein2genome:local similarity 1307654 1308245 297 - . alignment_id 2 ; Query NvOr76 ; Align 1308246 8 201 ; Align 1307960 76 132 ; Align 1307828 121 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr77 Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 314 Query range: 5 -> 177 Target range: 1308251 -> 1307653 6 : SerSerValArgIleAspGluTyrLeuTrpProAsnArgTyrLeuLeuGluLeuPh : 24 |||!.!..! !|||||| ! |||:!! ||||||!:! !|||! !! :!! SerLysThrSerIleAspTyrTyrIleLeuProAsnLysIleLeuCysGlyMetAl 1308251 : TCTAAAACGTCGATCGACTATTATATACTACCGAATAAAATCCTGTGCGGTATGGC : 1308197 25 : eGlyThrTrpProThrAspTyrAspGlyArgThrLeuAlaSerGlnLeuPheValA : 43 !|||..!||||||! !||| ! ! .!! !||| !!!!:!!||||||!.! aGlyValTrpProIleAspGluLysSerSerThr---ArgThrLysLeuPheAlaT 1308196 : CGGTGTCTGGCCTATCGACGAGAAAAGTTCAACG---CGTACCAAACTATTCGCAT : 1308143 44 : snPheArgValCysPheValPheValAlaIleThrGlyValLeuValProGluIle : 61 !!||||||:!! |||! !!!.||||||:!!!.!.!!:!!||||||||||||||| yrPheArgLeuIlePheGlyLeuValAlaLeuAsnSerMetLeuValProGluIle 1308142 : ACTTTCGGCTGATATTCGGATTAGTGGCACTCAATAGCATGTTAGTGCCAGAAATT : 1308089 62 : LeuMetIleIleValTyrTrpGlyAspLeuAspValLeuThr{G} >>>> Targ : 76 :!!|||:!!||| ! !!||||||:!!||| :!!|||.!!{|} MetMetValIleSerAsnTrpGlyAsnLeuArgIleLeuAla{G}+- 1308088 : ATGATGGTAATATCGAATTGGGGCAACTTAAGGATCCTAGCA{G}gc......... : 1308041 77 : et Intron 1 >>>> {ly}ValGlyCysIleAlaThrProValSerLeuIleL : 88 82 bp {||}|||||||||:!! !||| !!:!!.!!! ! | ++{ly}ValGlyCysValLeuThrThrLeuGlyGlnSerL 1308040 : ................ag{GA}GTAGGATGCGTTTTAACAACACTCGGGCAATCGT : 1307926 89 : euPheLysValAlaTyrMetIleIleArgArgAsnArgPheHisGlyValTyrSer : 106 ||||||||..! !|||:!:|||!!:||||||:!!!:! !:!! !!:!!|||! ! euPheLysThrIleTyrLeuIleMetArgArgAspLysThrTyrArgLeuTyrTyr 1307925 : TATTCAAAACGATTTACCTAATAATGAGAAGGGATAAAACCTACAGACTTTACTAC : 1307872 107 : AsnLeuArgArgLeuTrpLeuAlaIleAspAspAlaGluGluPheGluProLeuGl : 125 .!.:!!||| !||||||! !:!!! !|||||| !!:!!||| :!! !!!!|| GluIleArgAspLeuTrpHisSerThrAspAspProLysGluArgGlnAsnPheGl 1307871 : GAAATACGTGATCTGTGGCATTCTACCGACGATCCCAAAGAGAGACAGAACTTCGA : 1307815 126 : uGluLeuAlaArgLeuAlaLysArgValThrIleGlyPhePheLeuSerCysPheS : 144 |.!.|||||| !! !|||!:!! !:!!||||||! !|||!:!! !:!!|||.!.! uAsnLeuAlaTyrTrpAlaArgThrIleThrIleValPheTyrSerAlaCysMetT 1307814 : AAATCTCGCTTATTGGGCAAGAACAATTACAATAGTCTTTTACTCGGCCTGCATGT : 1307758 145 : erAsnAsnValSerPheThrThrAlaAlaValIleAspTrpValAsnTyrAsp<-> : 162 !!||| !!!!!|||||| !||||||..! !|||!:: !!! !!!: rpAsnValPheThrPheThrPheAlaAlaThrHisAspTyrPheMetIleGluTyr 1307757 : GGAACGTGTTCACATTCACGTTTGCTGCGACCCACGATTATTTCATGATCGAATAC : 1307704 163 : GluThrArgAsnAspSerThrProArgHisLeuProPheAspValTrp : 177 .!.! !!!!|||! !..!! ! !!:!||||||||||||!!:|||||| AsnIleSerAsnAlaGluLysSerLysHisLeuProPheGluValTrp 1307703 : AACATCAGCAACGCTGAAAAGAGCAAACACTTGCCCTTCGAAGTCTGG : 1307654 vulgar: NvOr77 5 177 . KQ414608.1 1308251 1307653 - 314 M 30 90 G 1 0 M 39 117 S 0 1 5 0 2 I 0 78 3 0 2 S 1 2 M 85 255 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1307654 1308251 314 - . gene_id 1 ; sequence NvOr77 ; gene_orientation + KQ414608.1 exonerate:protein2genome:local cds 1308044 1308251 . - . KQ414608.1 exonerate:protein2genome:local exon 1308044 1308251 . - . insertions 0 ; deletions 1 KQ414608.1 exonerate:protein2genome:local splice5 1308042 1308043 . - . intron_id 1 ; splice_site "GC" KQ414608.1 exonerate:protein2genome:local intron 1307962 1308043 . - . intron_id 1 KQ414608.1 exonerate:protein2genome:local splice3 1307962 1307963 . - . intron_id 0 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1307654 1307961 . - . KQ414608.1 exonerate:protein2genome:local exon 1307654 1307961 . - . insertions 3 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1307654 1308251 314 - . alignment_id 1 ; Query NvOr77 ; Align 1308252 6 90 ; Align 1308162 37 117 ; Align 1307960 77 255 ; Align 1307702 162 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr77 Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 305 Query range: 266 -> 408 Target range: 1306928 -> 1305876 267 : MetLeuArgIleAlaGluGluValArgArgLeuLeuAlaProIleIlePheMetGl : 285 :!:! !!!!:!:!.!.!.!::|||......|||......||||||:!!|||:!:|| LeuTyrSerValValAsnAspValAsnAsnLeuPheThrProIleValPheValGl 1306928 : TTATACAGCGTGGTGAATGatgtgaataatttatttactccCATCGTTTTCGTACA : 1306874 286 : nLeuLeuThrSerGlyLeuGlyIleCysLeuSerValTyrAlaValThrMetAsnG : 304 ||||||||||||||||:!!! !||||||||||||! !!:!|||||| ! |||! nLeuLeuThrSerGlyIleValIleCysLeuSerGlyPheAlaValPheAspAsnA 1306873 : ACTTCTTACAAGCGGAATAGTAATTTGTTTAAGTGGATTCGCGGTTTTCGATAACG : 1306817 305 : lySerLysGlyAlaAspLeuPheLysPheIleValPhePheValSerIlePheVal : 322 !:!!::: .!!|||:!!.!.|||!:!:!! !!:!!!. !||||||!:::!! spAlaArg---ThrAspIleLeuLysTyrValSerTyrLeuSerSerIleTrpLeu 1306816 : ACGCCCGT---ACCGATATTCTGAAATACGTATCTTATTTGTCCTCGATTTGGTTG : 1306766 323 : GlyLeuIleIleTrpCysTrpProGlyGlnLeuLeuMetGlnAspSerAlaAlaLe : 341 !|||:!::!!||||||! !||||||:!!:!!|||:!:|||!!:||| !! !:! GlnLeuLeuLeuTrpCysLeuProGlyGluIleLeuValGlnGluSerLeuGluIl 1306765 : CAACTTTTGTTATGGTGTTTGCCCGGTGAAATTCTCGTTCAAGAGAGTTTAGAAAT : 1306709 342 : uGlyAspValValCysTyrGluLeuProTrpHisLeuLeuGlyValAlaGluGlnA : 360 !||| !!||||||! !! .!.:!!||||||:!! !||| ! ! ! ! |||| eGlyHisValValTyrLeuAsnValProTrpTyrAsnLeuProProIleTyrGlnA 1306708 : AGGACACGTAGTCTACTTAAATGTACCATGGTACAATTTGCCGCCAATTTACCAGA : 1306652 361 : rgAsnLeuAlaPhePheIleMetArgAlaGlnLysGluCysGlnIleThrAlaLeu : 378 ||!!.|||..!.!..!.|||:!:|||||||||:!! ! |||...|||||||||||| rgLysLeuCysMetMetIleLeuArgAlaGlnGlnTyrCysSerIleThrAlaLeu 1306651 : GAAAACTTTGCATGATGATCCTTAGGGCACAACAATATTGCAGCATCACGGCATTA : 1306598 379 : GlyPheGlnValLeuSerMetAsnLysPheThrGlu >>>> Target Intron : 391 !|||!:!..!||||||!!::!!! !!!.|||... 629 bp ThrPheArgThrLeuSerIleHisThrLeuThrSer++ 1306597 : ACGTTTCGAACGTTGTCTATTCACACGTTAACGAGCgt.................. : 1306557 392 : 1 >>>> IlePheAsnSerAlaGlySerTyrPheAlaLeuLeuArgThrIleHi : 406 :!!||||||!!!|||!.!|||||||||.!!||||||||| !!!:!! ++ValPheAsnThrAlaAlaSerTyrPheThrLeuLeuArgGlnMetGl 1306556 : .......agGTATTCAATACAGCCGCTTCATATTTCACTTTGCTGCGACAAATGCA : 1305885 407 : sGluLys : 408 .:!!||| nGlnLys 1305884 : ACAAAAG : 1305877 vulgar: NvOr77 266 408 . KQ414608.1 1306928 1305876 - 305 M 40 120 G 1 0 M 83 249 5 0 2 I 0 625 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1305877 1306928 305 - . gene_id 2 ; sequence NvOr77 ; gene_orientation + KQ414608.1 exonerate:protein2genome:local cds 1306560 1306928 . - . KQ414608.1 exonerate:protein2genome:local exon 1306560 1306928 . - . insertions 0 ; deletions 1 KQ414608.1 exonerate:protein2genome:local splice5 1306558 1306559 . - . intron_id 1 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1305931 1306559 . - . intron_id 1 KQ414608.1 exonerate:protein2genome:local splice3 1305931 1305932 . - . intron_id 0 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1305877 1305930 . - . KQ414608.1 exonerate:protein2genome:local exon 1305877 1305930 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1305877 1306928 305 - . alignment_id 2 ; Query NvOr77 ; Align 1306929 267 120 ; Align 1306809 308 249 ; Align 1305931 391 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr76 Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 164 -> 235 Target range: 204005 -> 204218 165 : AsnLysSerLeuLeuGluArgArgLeuProPheAspValTrpPheGlyPheAspLeuG : 184 |||:!!!!! !:!!:!!!:!! !!!!||| ! ...:::::: :::|||:::. AsnGluThrAsnIleLysLysLeuPheProValProThrTyrTyrIleTyrAspIleS 204006 : AACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttattatatttacgatataT : 204063 185 : lnArgThrProAsnPheGluLeuValPheValGlyGlnSerIleSerAlaIlePheCy : 203 ....!|||||| !!||||||:!!:!!|||:!! !|||! ! !!!! !:!:!!. erGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMe 204064 : CTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAAT : 204120 204 : sCysPheGlyIleValGlyLeuAspThrAlaMetMetAlaLeuIleLeuHisValCys : 222 ....!! !! !:!!|||:!!|||!.! !.!. !||||||||||||:!!||| tAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeuIleLeuHisIleCys 204121 : GGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGC : 204177 223 : GlyHisPheArgValIleGlyAlaArgLeuArgAlaIle : 235 |||!!.!!...! !:!! !!.!!|||||| ! !||| GlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIle 204178 : GGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATA : 204218 vulgar: NvOr76 164 235 . KQ414617.1 204005 204218 + 108 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204006 204218 108 + . gene_id 1 ; sequence NvOr76 ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204006 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 204006 204218 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204006 204218 108 + . alignment_id 1 ; Query NvOr76 ; Align 204006 165 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr67 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 3 -> 77 Target range: 1385634 -> 1385862 4 : LeuIleAsnLysProLeuGluTyrSerLeuLysLeuSerGlyPheTrpPro<->Ph : 21 :!!||||||:::||||||||||||||||||:::|||! !||| !|||||| ! IleIleAsnArgProLeuGluTyrSerLeuArgLeuPheGlyAlaTrpProAspSe 1385635 : ATAATTAATCGTCCATTGGAATATAGCCTCCGTCTATTTGGCGCCTGGCCAGATTC : 1385689 22 : eGluPheAsnIleIleGlySerLeuAlaLeuIleSerThrLeuValThrThrLeuP : 40 !...!:!:::.!!:!: !|||:!! !! ! !!!! !:!!!.!||| ||| rSerTyrSerPheLeuLysSerIleIleTrpSerThrIleMetAlaThrPheLeuM 1385690 : TTCCTATTCATTTCTGAAAAGTATTATTTGGTCGACGATAATGGCAAcgtttttaa : 1385746 41 : roPheGlnCysTrpGlnAlaPhe<->AsnPheThrAsnAspPheValLeuLeuMet : 57 |||||| !||| ! ..!.!! :!!.!!! !::: ...::: |||::: etPheGlnTyrTrpTyrCysIleThrHisIleArgSerGlyLeuIleAspLeuLeu 1385747 : tgtttcaataTTGGTATTGTATTACTCATATTAGATCAggtttaattgatttattg : 1385800 58 : AspSerLeuSerAspIleLeuAlaGluValLeuIlePheLeuLysLeuPheAlaMe : 76 |||.!!|||||| !! !|||:!!.!. !|||:!!||||||||||||.!! !!! AspGlyLeuSerIleThrLeuSerAsnSerLeuValPheLeuLysLeuIleIleIl 1385801 : GACGGATTGAGTATTACTTTATCAAATTCACTCGTCTTTCTCAAATTGATTATTAT : 1385857 77 : tTrp : 77 :||| eTrp 1385858 : TTGG : 1385862 vulgar: NvOr67 3 77 . KQ414716.1 1385634 1385862 + 119 M 17 51 G 0 3 M 27 81 G 0 3 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1385635 1385862 119 + . gene_id 1 ; sequence NvOr67 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1385635 1385862 . + . KQ414716.1 exonerate:protein2genome:local exon 1385635 1385862 . + . insertions 6 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1385635 1385862 119 + . alignment_id 1 ; Query NvOr67 ; Align 1385635 4 51 ; Align 1385689 21 81 ; Align 1385773 48 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr67 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 222 -> 272 Target range: 1401081 -> 1401231 223 : LysSerThrValAspLeuLysGlnValIleSerGlnHisArgLysIleLeuTyrLe : 241 |||..! ...:::||| |||::!::!|||!:!:!!|||:!! !!! LysAspGlyLysGlnIleLysPhePheIleAsnArgHisGlnGluIleIleValPh 1401082 : AAAGACggaaaacaaataaaattcttcattaACAGACATCAGGAAATTATTGTTTT : 1401136 242 : uValGlnSerIleAspAsnAlaTyrSerTyrValSerLeuPheGlnIleValPheS : 260 !!.!:!!!!!|||!!:!!. !!:!!!!|||:!!:!!||| !|||:!!|||! !! eAlaGluArgIleGluLysLeuPheThrTyrMetAlaLeuSerGlnLeuValSerA 1401137 : TGCAGAAAGAATTGAGAAACTTTTTACATACATGGCTCTCAGTCAACTTGTGTCCA : 1401193 261 : erThrIleIleIleCysValThrGlyPheValIleVal : 272 :!||||||||||||||| !..!||||||:!!:!!||| snThrIleIleIleCysCysValGlyPheLeuValVal 1401194 : ATACGATAATTATATGTTGCGTAGGATTTCTCGTTGTA : 1401231 vulgar: NvOr67 222 272 . KQ414716.1 1401081 1401231 + 101 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1401082 1401231 101 + . gene_id 2 ; sequence NvOr67 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1401082 1401231 . + . KQ414716.1 exonerate:protein2genome:local exon 1401082 1401231 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1401082 1401231 101 + . alignment_id 2 ; Query NvOr67 ; Align 1401082 223 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr62 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 303 -> 373 Target range: 1387510 -> 1387799 304 : CysIleAlaGlyGluTyrLeuThrSerGln >>>> Target Intron 1 >>> : 314 ||| !.!!||||||||||||||||||:!! 79 bp CysTyrThrGlyGluTyrLeuThrSerLys++ 1387511 : TGTTATACCGGAGAATATCTAACCTCTAAGgt........................ : 1387543 315 : > SerGluIleIlePheAsnGluLeuTyrAsnCysTyrTrpTyrGluPheProSe : 331 |||||| !||| .!....:::|||||| ||||||!!:.!. ! ! ++SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysPr 1387544 : .agagtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACC : 1387671 332 : rSerTyrLysLysAlaIleCysPheMetLeuLeuLysAlaArgLysProValLysL : 350 ! !! ! ::: ::: ...::::::|||::::!!!:!||| !:!!! !| oArgGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleL 1387672 : TCGAGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATAC : 1387728 351 : euThrValGlyLysPheSerThrLeuSerLeuIleTyrLeuThrSerIleMetLys : 368 |||||!.!||||||||| !!.!||||||||| ! !!!.!!!::::: ... euThrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnValArgAsn 1387729 : TCACTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgtaagaaat : 1387782 369 : ThrSerPheSerTyr : 373 :::||| ||| ***AsnPheArgTyr 1387783 : tgaaattttcggtaT : 1387799 vulgar: NvOr62 303 373 . KQ414716.1 1387510 1387799 + 133 M 10 30 5 0 2 I 0 75 3 0 2 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387511 1387799 133 + . gene_id 1 ; sequence NvOr62 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387511 1387540 . + . KQ414716.1 exonerate:protein2genome:local exon 1387511 1387540 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387541 1387542 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387541 1387619 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387618 1387619 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387620 1387799 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387799 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387511 1387799 133 + . alignment_id 1 ; Query NvOr62 ; Align 1387511 304 30 ; Align 1387620 314 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr69 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 280 -> 380 Target range: 1394874 -> 1395914 281 : AspIleValLeuLeuIleLysPheAlaThrPheIleTrpPheLeuLeuTrpGlnIl : 299 :::||| ...|||||| ! !||| ! !:!! ! !:!! AsnIleLysThrPheIleLysThrLeuLeuPheTyrIleAlaIleThrMetGluAl 1394875 : aatataaaaacatttataaaaacattACTCTTTTACATCGCTATCACTATGGAAGC : 1394929 300 : ePheSerPheCysPheAlaGlyGlnTyrLeuLeuAsnLys >>>> Target In : 313 !|||! !|||! !|||||||||:!!|||||| !|||||| 353 aPheIlePheSerPheAlaGlyGluTyrLeuSerAsnLys++ 1394930 : ATTCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAAgt.............. : 1394973 314 : tron 1 >>>> GlyGluThrIleThrGlyAlaMetTyrAspSerAspTrpTyrA : 327 bp .!! !:!!|||!:!..!||| |||..!||| !|||||| ++SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrL 1394974 : ...........agAGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACC : 1395366 328 : snIleGluSerAsnAspValLysAlaIleSerPheIleIleLysLysThrGlnArg : 345 !:!:!!: !!.!.||| ! ! !|||! !.!!:!!!!:! !!:!:!!|||||| euLeuAspProGlnAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArg 1395367 : TTCTGGATCCTCAAGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGA : 1395420 346 : ProLeuSerValThrAlaGlyLysTyrIleProLeuSerValThrSerPheAlaAl : 364 ! !|||!!!:!!||||||||||||!:!!!: !||||||:!! !.!!|||||| ArgLeuThrIleThrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAs 1395421 : CGATTAACAATCACCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAA : 1395477 365 : a >>>> Target Intron 2 >>>> IleValLysThrSerPheSerTyrLe : 373 ! 387 bp |||:!!|||.!!||| ||||||:! n++ ++IleLeuLysAlaSerAlaSerTyrIl 1395478 : Tgt.........................agatcTTAAAGGCTTCTGCATCGTACAT : 1395891 374 : uSerValLeuArgAlaSerTyr : 380 !||||||||| !|||! !||| eSerValLeuTyrAlaMetTyr 1395892 : ATCTGTACTGTATGCGATGTAC : 1395914 vulgar: NvOr69 280 380 . KQ414716.1 1394874 1395914 + 162 M 32 96 5 0 2 I 0 349 3 0 2 M 52 156 5 0 2 I 0 383 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394875 1395914 162 + . gene_id 1 ; sequence NvOr69 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394875 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394875 1394970 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394971 1394972 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394971 1395323 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1395322 1395323 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1395324 1395479 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395479 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1395480 1395481 . + . intron_id 2 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1395480 1395866 . + . intron_id 2 KQ414716.1 exonerate:protein2genome:local splice3 1395865 1395866 . + . intron_id 1 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1395867 1395914 . + . KQ414716.1 exonerate:protein2genome:local exon 1395867 1395914 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394875 1395914 162 + . alignment_id 1 ; Query NvOr69 ; Align 1394875 281 96 ; Align 1395324 313 156 ; Align 1395867 365 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr69 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 8 -> 82 Target range: 1385646 -> 1385874 9 : ProLeuGluTyrThrLeuArgIleAsnGlyLeuTrpProGlyGluAsn<->AsnIl : 26 ||||||||||||!:!||||||:!! !||| !||||||! !...::! :::.! ProLeuGluTyrSerLeuArgLeuPheGlyAlaTrpProAspSerSerTyrSerPh 1385647 : CCATTGGAATATAGCCTCCGTCTATTTGGCGCCTGGCCAGATTCTTCCTATTCATT : 1385701 27 : eLeuGlySerIleValThrAlaSerGlyMetValLeuIleLeuProPheGlnValT : 45 !||| !||||||:!! !:!!!!! !|||!.! ...||| |||||| !| eLeuLysSerIleIleTrpSerThrIleMetAlaThrPheLeuMetPheGlnTyrT 1385702 : TCTGAAAAGTATTATTTGGTCGACGATAATGGCAAcgtttttaatgtttcaataTT : 1385758 46 : rpAspAlaIleLysThrIleAspAsnProIleLeu<->LeuMetAspSerLeuSer : 62 || !!..!|||! !||| ::: :::::: |||:::|||.!!|||||| rpTyrCysIleThrHisIleArgSerGlyLeuIleAspLeuLeuAspGlyLeuSer 1385759 : GGTATTGTATTACTCATATTAGATCAggtttaattgatttattgGACGGATTGAGT : 1385812 63 : AspIleMetThrGluIleAlaLeuTyrAlaLysLeuIleIleMetTrpPheAsnAr : 81 !! !:!::!!.!. ! !:!!!:! !||||||||||||!!:|||.!!:!!!! IleThrLeuSerAsnSerLeuValPheLeuLysLeuIleIleIleTrpLeuHisSe 1385813 : ATTACTTTATCAAATTCACTCGTCTTTCTCAAATTGATTATTATTTGGCTTCATAG : 1385869 82 : gArg : 82 !||| rArg 1385870 : TCGG : 1385874 vulgar: NvOr69 8 82 . KQ414716.1 1385646 1385874 + 112 M 16 48 G 0 3 M 32 96 G 0 3 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1385647 1385874 112 + . gene_id 2 ; sequence NvOr69 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1385647 1385874 . + . KQ414716.1 exonerate:protein2genome:local exon 1385647 1385874 . + . insertions 6 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1385647 1385874 112 + . alignment_id 2 ; Query NvOr69 ; Align 1385647 9 48 ; Align 1385698 25 96 ; Align 1385797 57 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr65 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 278 -> 363 Target range: 1394874 -> 1395482 279 : AsnIleSerAlaLeuLeuLeuCysIleAlaTyrMetPheThrAlaLeuSerAlaVa : 297 ||||||.........::: ::! !!:! .!!.!! ! !! !! !!. AsnIleLysThrPheIleLysThrLeuLeuPheTyrIleAlaIleThrMetGluAl 1394875 : aatataaaaacatttataaaaacattACTCTTTTACATCGCTATCACTATGGAAGC : 1394929 298 : lGlySerTyrCysIleAlaGlyGluTyrLeuMetSerGln >>>> Target In : 311 ! !! !!:!! !.!!|||||||||||||||! !:!:!! 353 aPheIlePheSerPheAlaGlyGluTyrLeuSerAsnLys++ 1394930 : ATTCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAAgt.............. : 1394973 312 : tron 1 >>>> GlySerLeuIlePheGluLysLeuTyrAspCysProTrpTyrL : 325 bp .!! !! !||| !.!. ! !|||..!! ||||||||| ++SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrL 1394974 : ...........agAGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACC : 1395366 326 : ysPheLysProValAspThrLysThrPheIleIleMetLeuMetLysSerArgHis : 343 .!. ! ||| !|||! ! ! ! !.!!|||:!!:!::!!!!:!:!|||!:!... euLeuAspProGlnAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArg 1395367 : TTCTGGATCCTCAAGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGA : 1395420 344 : SerValThrIleThrAlaGlyAsnPheGlyAspLeuSerLeuValTyrPheThrAs : 362 !!:!!|||||||||||||||!!.||| !||||||||||||! ! !|||.!!|| ArgLeuThrIleThrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAs 1395421 : CGATTAACAATCACCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAA : 1395477 363 : nIle : 363 |:!! nVal 1395478 : TGTA : 1395482 vulgar: NvOr65 278 363 . KQ414716.1 1394874 1395482 + 119 M 32 96 5 0 2 I 0 349 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394875 1395482 119 + . gene_id 1 ; sequence NvOr65 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394875 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394875 1394970 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394971 1394972 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394971 1395323 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1395322 1395323 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394875 1395482 119 + . alignment_id 1 ; Query NvOr65 ; Align 1394875 279 96 ; Align 1395324 311 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr68 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 303 -> 369 Target range: 1387619 -> 1387952 304 : SerAspMetIleProTyrGlnValTyrAspAlaLeuTrpTyrLysAlaGluAlaTh : 322 |||:!: ||| !! ! ...||||||::: ||||||||| ! !:!! !! SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 323 : rGluMetLysAlaIleLeuPheIleIleLysArgAlaGlnThrProLeuSerLeuS : 341 !||| ::: :::|||...|||||| |||:!!|||! ! !|||! !|||! gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 342 : erAlaGlyLysPheIleAlaLeuSerAlaGlnThrPheThrLeu >>>> Targe : 356 !!||||||||||||:!: !|||||| ! .!!|||.!! hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt.......... : 1387778 357 : t Intron 1 >>>> IleIleLysThrSerPheSerTyrLeuSerValLeuLys : 368 135 bp ::::!!|||.!!||| !||||||:!!||||||||| ! ++MetLeuLysAlaSerAlaSerTyrValSerValLeuHis 1387779 : ...............agatgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTTGCAT : 1387947 369 : Ala : 369 ||| Ala 1387948 : GCA : 1387952 vulgar: NvOr68 303 369 . KQ414716.1 1387619 1387952 + 122 M 52 156 5 0 2 I 0 131 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387952 122 + . gene_id 1 ; sequence NvOr68 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387952 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387952 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387952 122 + . alignment_id 1 ; Query NvOr68 ; Align 1387620 304 156 ; Align 1387911 356 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr68 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 4 -> 80 Target range: 1385634 -> 1385868 5 : IleIleGlyIleProLeuGluTyrThrLeuLysLeuAlaGlyLeuTrpProAspGl : 23 ||||||..! !||||||||||||!:!|||:::||| !||| !|||||||||.. IleIleAsnArgProLeuGluTyrSerLeuArgLeuPheGlyAlaTrpProAspSe 1385635 : ATAATTAATCGTCCATTGGAATATAGCCTCCGTCTATTTGGCGCCTGGCCAGATTC : 1385689 24 : nSer<->AsnIleLeuGlySerIleValMetGlySerAlaLeuValThrMetIleP : 41 .||| :::.!!||| !||||||:!! !..!!!! !:!!!.!|||...::: rSerTyrSerPheLeuLysSerIleIleTrpSerThrIleMetAlaThrPheLeuM 1385690 : TTCCTATTCATTTCTGAAAAGTATTATTTGGTCGACGATAATGGCAAcgtttttaa : 1385746 42 : roPheGlnValTrpAspThrIle<->AsnValSerAspAsnLeuValMetValMet : 58 |||||| !||| !! !||| :!!:!!!!!......|||::: :::::: etPheGlnTyrTrpTyrCysIleThrHisIleArgSerGlyLeuIleAspLeuLeu 1385747 : tgtttcaataTTGGTATTGTATTACTCATATTAGATCAggtttaattgatttattg : 1385800 59 : AspAsnLeuSerAsnIleLeuSerGluValLeuLeuTyrThrAsnPheIleValLe : 77 |||...||||||! !! !||||||.!. !|||:!!!:! !!!.!!.|||:!!:! AspGlyLeuSerIleThrLeuSerAsnSerLeuValPheLeuLysLeuIleIleIl 1385801 : GACGGATTGAGTATTACTTTATCAAATTCACTCGTCTTTCTCAAATTGATTATTAT : 1385857 78 : uLeuLeuAsn : 80 !! !|||:!! eTrpLeuHis 1385858 : TTGGCTTCAT : 1385868 vulgar: NvOr68 4 80 . KQ414716.1 1385634 1385868 + 120 M 20 60 G 0 3 M 24 72 G 0 3 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1385635 1385868 120 + . gene_id 2 ; sequence NvOr68 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1385635 1385868 . + . KQ414716.1 exonerate:protein2genome:local exon 1385635 1385868 . + . insertions 6 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1385635 1385868 120 + . alignment_id 2 ; Query NvOr68 ; Align 1385635 5 60 ; Align 1385698 25 72 ; Align 1385773 49 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr68 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 311 -> 369 Target range: 1345588 -> 1345840 312 : TyrAspAlaLeuTrpTyrLysAlaGluAlaThrGluMetLysAlaIleLeuPheIl : 330 ||| !::! !|||||| ! ! !! !! ! ! ! !::!:!!:!!:!!||| TyrPheSerAsnTrpTyrAspLeuProAspLysTyrThrArgSerLeuIlePheCy 1345589 : TACTTCAGTAATTGGTACGATTTACCAGATAAATACACGCGATCGTTAATATTTTG : 1345643 331 : eIleLysArgAlaGlnThrProLeuSerLeuSerAlaGlyLysPheIleAlaLeuS : 349 !||| |||:!!|||! !|||! !! !|||!!!|||||||||||| !!.!!!!| sIleAlaArgSerGlnLysProSerTyrLeuThrAlaGlyLysPheTyrValPheS 1345644 : CATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAGCTGGCAAGTTCTACGTGTTCT : 1345700 350 : erAlaGlnThrPheThrLeu >>>> Target Intron 1 >>>> IleIleL : 358 || !:!!|||||| !:!! 78 bp |||:!!| erLeuGluThrPheGlyIle++ ++IleValL 1345701 : CGTTAGAAACATTCGGCATCgt.........................agATAGTAA : 1345805 359 : ysThrSerPheSerTyrLeuSerValLeuLysAla : 369 ||.!!|||.!.:!!||||||||||||||||||::! ysAlaSerMetAlaTyrLeuSerValLeuLysSer 1345806 : AAGCGTCGATGGCCTATCTTTCCGTTCTGAAAAGC : 1345840 vulgar: NvOr68 311 369 . KQ414782.1 1345588 1345840 + 116 M 44 132 5 0 2 I 0 74 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345589 1345840 116 + . gene_id 1 ; sequence NvOr68 ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345589 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345589 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345840 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345840 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345589 1345840 116 + . alignment_id 1 ; Query NvOr68 ; Align 1345589 312 132 ; Align 1345799 356 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr76 Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 335 Query range: 256 -> 396 Target range: 4394819 -> 4395361 257 : LysLeuAlaIleTrpGlnCysIleGlnTyrHisGlnGlnMetIle{Ly} >>>> : 272 ||| ! !:!: :!!||||||!:::!!||||||!:!||||||{!!} LysAlaAsnLeuIleLysCysIleArgHisHisGlnArgMetIle{As}++ 4394820 : AAAGCGAATCTGATCAAATGCATTCGCCATCACCAACGAATGATA{AA}gt..... : 4394869 273 : Target Intron 1 >>>> {s}PheAlaGluGluValArgSerLeuLeuSerP : 283 131 bp {.} !!!.!.!.!::|||...:::||||||:::| ++{n}ValValAsnAspValAsnAsnLeuLeuThrP 4394870 : ....................ag{C}GTTGTGAACGacgtgaataatttattaacac : 4395029 284 : roIleIlePheValGlnLeuLeuThrSerGlyLeuGluIleCysLeuSerGlyTyr : 301 |||||||||||:!!||||||||||||||||||:!!||||||||||||||||||!:! roIleIlePheMetGlnLeuLeuThrSerGlyIleGluIleCysLeuSerGlyPhe 4395030 : cCATCATTTTCATGCAACTTCTTACGAGCGGAATAGAGATTTGTTTGAGTGGATTC : 4395083 302 : AlaValIleValAsnSerAspAlaGlyAsnTyrGlyAspLeuValLysCysThrGl : 320 ||||||||| ||| !|||!.! ! !||||||:!!|||! !..!.. AlaValIle---------AspAsnGlyThrGlyThrAspLeuLeuLysPheValSe 4395084 : GCGGTGATC---------GATAACGGCACCGGTACCGATCTTCTCAAATTTGTGTC : 4395131 321 : yTyrPheLeuSerValPheIleGlnLeuIleIleTrpCysTrpProGlyGlnIleL : 339 !|||!!. !|||:!! :!:||||||:!::!!|||||||||||||||:!!|||| rTyrLeuThrSerMetGlyValGlnLeuLeuLeuTrpCysTrpProGlyGluIleL 4395132 : TTATTTAACCTCGATGGGGGTGCAACTTTTGCTATGGTGTTGGCCTGGTGAAATTC : 4395188 340 : euIleGlnAspSerSerGluIleGlyArgIleValLeuHisAspLeuProTrpTrp : 357 ||:!!|||!!:|||! !|||||||||!.!:!!|||! !! :!!:!!||||||!:: euValGlnGluSerLeuGluIleGlyHisValValTyrLeuAsnIleProTrpTyr 4395189 : TCGTTCAAGAGAGTTTAGAAATAGGTCATGTAGTCTATCTAAATATACCATGGTAC : 4395242 358 : AspMetAlaThrGluGlnGlnArgGlnPheValPheValIlePheArgThrGlnLy : 376 :!!:!: !! !! ! |||!:!|||.!! !.!.:!!|||.!!|||.!!|||:! AsnLeuProProIleTyrGlnLysGlnLeuCysLeuMetIleIleArgAlaGlnGl 4395243 : AATTTACCACCGATTTATCAGAAACAACTTTGCCTGATGATCATTAGGGCCCAACA : 4395299 377 : sGluCysGlnIleThrAlaLeuGlyPheGlnValMetSerMetSerLysLeuThrA : 395 ! ! |||...|||||||||||| !||||||..!:!!|||!!: !! !||||||! nTyrCysSerIleThrAlaLeuThrPheGlnThrLeuSerIleHisThrLeuThrA 4395300 : GTATTGCAGCATTACGGCATTAACGTTTCAAACGTTGTCTATTCACACGTTAACAG : 4395356 396 : spVal : 396 !||| laVal 4395357 : CCGTA : 4395361 vulgar: NvOr76 256 396 . KQ414784.1 4394819 4395361 + 335 M 15 45 S 0 2 5 0 2 I 0 127 3 0 2 S 1 1 M 32 96 G 3 0 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4394820 4395361 335 + . gene_id 1 ; sequence NvOr76 ; gene_orientation + KQ414784.1 exonerate:protein2genome:local cds 4394820 4394866 . + . KQ414784.1 exonerate:protein2genome:local exon 4394820 4394866 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4394867 4394868 . + . intron_id 1 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4394867 4394997 . + . intron_id 1 KQ414784.1 exonerate:protein2genome:local splice3 4394996 4394997 . + . intron_id 0 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394998 4395361 . + . KQ414784.1 exonerate:protein2genome:local exon 4394998 4395361 . + . insertions 0 ; deletions 3 KQ414784.1 exonerate:protein2genome:local similarity 4394820 4395361 335 + . alignment_id 1 ; Query NvOr76 ; Align 4394820 257 45 ; Align 4394999 273 96 ; Align 4395095 308 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr76 Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 322 Query range: 7 -> 178 Target range: 4393596 -> 4394417 8 : SerSerIleAspSerPheLeuTrpProAsnArgTyrThrLeuGluPheLeuGlyPh : 26 :!!|||||||||! !!:!:!! ||||||!:! ! !! !....!. !|||.! AlaSerIleAspTyrTyrIleLeuProAsnLysIlePheCysSerIleAlaGlyMe 4393597 : GCGTCGATCGATTATTATATACTACCGAACAAGATCTTTTGTAGTATAGCTGGAAT : 4393651 27 : eTrpProProGluProGlyThrSerSerIleSerLysTyrPheAlaAlaPheArgI : 45 .|||||| !!!: ! !!:!|||!!! !|||||| |||||| !||||||: tTrpProIleAspGluLysSerSerThrArgSerLysLeuPheAlaTyrPheArgL 4393652 : GTGGCCTATCGACGAGAAAAGTTCAACGCGTAGCAAACTATTCGCATACTTCCGTC : 4393708 46 : leValPheSerIleLeuAlaIleGlyPheLeuPheValProGluIleMetMetVal : 63 !::!!|||.!!:!! !||||||.!! !:!!|||||||||||||||||| !:!! euIlePheGlyLeuThrAlaIleSerSerValPheValProGluIleMetAlaIle 4393709 : TGATATTCGGATTAACGGCAATCAGTAGTGTCTTCGTGCCAGAAATTATGGCGATA : 4393762 64 : ValValPheTrpGlyAspIleThrValLeuThr{G} >>>> Target Intron : 75 ||| ! !||||||||||||! !:!!|||.!!{|} 311 bp ValTrpAsnTrpGlyAspIleArgIleLeuAla{G}+- 4393763 : GTGTGGAATTGGGGTGACATAAGAATCTTGGCA{G}gc.................. : 4393801 76 : 1 >>>> {ly}ValGlyCysValSerThrThrLeuAlaGlnLeuAsnPheLysM : 90 {||}||||||||||||! !||||||:!!!.!|||||| ||||||| ++{ly}ValGlyCysValLeuThrThrValGlyGlnLeuLeuPheLysM 4393802 : .......ag{GA}GTAGGATGCGTTTTAACAACAGTCGGACagttattattcaaaa : 4394154 91 : etLeuTyrValLeuAlaArgArgArgArgPheCysArgAlaTyrArgLysThrArg : 108 ||:!!|||:!!:!!||||||||| !!:! ! !!:! !! !!.!:!!! !||| etIleTyrLeuIleAlaArgArgAspLysThrTyrLysLeuCysAsnGluIleArg 4394155 : tgATTTACCTAATAGCGAGAAGGGACAAAACGTACAAGCTTTGCAACGAAATACGT : 4394208 109 : GluLeuTrpSerMetThrAspHisGluSerGluLeuArgLysGlyLeuGluLysLe : 127 !!:||||||..! :!!||| !! !!.!||| |||:!!..!! !|||:!!|| AspLeuTrpAspSerSerAspAspProLysGlu---ArgGlnSerTyrGluGluLe 4394209 : GATCTATGGGATTCATCCGATGATCCAAAAGAA---AGACAGTCCTACGAAGAGCT : 4394262 128 : uAlaGlyGlnAlaLysLysTyrSerIleAlaPhePhePheThrCysPheCysAsnA : 146 |||| ! !|||!:!!!. !!!!||| !|||!:!! :!!|||.!.|||||| uAlaHisTrpAlaArgAsnLeuThrIleIlePheTyrSerSerCysMetCysAsnV 4394263 : CGCTCATTGGGCAAGAAACCTTACGATAATCTTTTACTCGTCCTGCATGTGCAACG : 4394319 147 : snIleSerPheThrThrLeuSerValValValTrpLeuAsnTyrAsnAlaGlnGlu : 164 .!!!!!||||||! ! !:!!!.! !!! !!::!!!!.. !.!. !...! alPheThrPheThrIleAlaAlaAlaPheAspTyrPheThrIleGluTyrSerVal 4394320 : TGTTCACATTCACGATTGCCGCAGCCTTCGATTATTTCACGATCGAATACAGCGTC : 4394373 165 : AsnLysSerLeuLeuGluArgArgLeuProPheAspValTrp : 178 !:! ! :!! ! !...|||!.!|||||||||!!:|||||| SerAspAlaAspLysSerArgHisLeuProPheGluValTrp 4394374 : AGCGATGCTGATAAAAGTCGACACTTGCCCTTCGAAGTCTGG : 4394417 vulgar: NvOr76 7 178 . KQ414784.1 4393596 4394417 + 322 M 67 201 S 0 1 5 0 2 I 0 307 3 0 2 S 1 2 M 44 132 G 1 0 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4393597 4394417 322 + . gene_id 2 ; sequence NvOr76 ; gene_orientation + KQ414784.1 exonerate:protein2genome:local cds 4393597 4393798 . + . KQ414784.1 exonerate:protein2genome:local exon 4393597 4393798 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local splice5 4393799 4393800 . + . intron_id 1 ; splice_site "GC" KQ414784.1 exonerate:protein2genome:local intron 4393799 4394109 . + . intron_id 1 KQ414784.1 exonerate:protein2genome:local splice3 4394108 4394109 . + . intron_id 0 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394110 4394417 . + . KQ414784.1 exonerate:protein2genome:local exon 4394110 4394417 . + . insertions 0 ; deletions 1 KQ414784.1 exonerate:protein2genome:local similarity 4393597 4394417 322 + . alignment_id 2 ; Query NvOr76 ; Align 4393597 8 201 ; Align 4394112 76 132 ; Align 4394244 121 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr77 Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 339 Query range: 266 -> 407 Target range: 4394989 -> 4395880 267 : MetLeuArgIleAlaGluGluValArgArgLeuLeuAlaProIleIlePheMetGl : 285 :!:! !!!!:!!!.!.!.!::|||......||||||...||||||||||||||||| LeuTyrSerValValAsnAspValAsnAsnLeuLeuThrProIleIlePheMetGl 4394990 : TTATACAGCGTTGTGAACGacgtgaataatttattaacaccCATCATTTTCATGCA : 4395044 286 : nLeuLeuThrSerGlyLeuGlyIleCysLeuSerValTyrAlaValThrMetAsnG : 304 ||||||||||||||||:!!! !||||||||||||! !!:!||||||! ! |||| nLeuLeuThrSerGlyIleGluIleCysLeuSerGlyPheAlaValIleAspAsnG 4395045 : ACTTCTTACGAGCGGAATAGAGATTTGTTTGAGTGGATTCGCGGTGATCGATAACG : 4395101 305 : lySerLysGlyAlaAspLeuPheLysPheIleValPhePheValSerIlePheVal : 322 ||!!! |||.!!||||||.!!||||||:!: !!:!!!...!|||!!: ||| lyThr---GlyThrAspLeuLeuLysPheValSerTyrLeuThrSerMetGlyVal 4395102 : GCACC---GGTACCGATCTTCTCAAATTTGTGTCTTATTTAACCTCGATGGGGGTG : 4395152 323 : GlyLeuIleIleTrpCysTrpProGlyGlnLeuLeuMetGlnAspSerAlaAlaLe : 341 !|||:!::!!|||||||||||||||:!!:!!|||:!:|||!!:||| !! !:! GlnLeuLeuLeuTrpCysTrpProGlyGluIleLeuValGlnGluSerLeuGluIl 4395153 : CAACTTTTGCTATGGTGTTGGCCTGGTGAAATTCTCGTTCAAGAGAGTTTAGAAAT : 4395209 342 : uGlyAspValValCysTyrGluLeuProTrpHisLeuLeuGlyValAlaGluGlnA : 360 !||| !!||||||! ! .!.:!!||||||:!! !||| ! ! ! ! |||! eGlyHisValValTyrLeuAsnIleProTrpTyrAsnLeuProProIleTyrGlnL 4395210 : AGGTCATGTAGTCTATCTAAATATACCATGGTACAATTTACCACCGATTTATCAGA : 4395266 361 : rgAsnLeuAlaPhePheIleMetArgAlaGlnLysGluCysGlnIleThrAlaLeu : 378 :!.!.|||..!.!..!.|||!!:|||||||||:!! ! |||...|||||||||||| ysGlnLeuCysLeuMetIleIleArgAlaGlnGlnTyrCysSerIleThrAlaLeu 4395267 : AACAACTTTGCCTGATGATCATTAGGGCCCAACAGTATTGCAGCATTACGGCATTA : 4395320 379 : GlyPheGlnValLeuSerMetAsnLysPheThrGlu >>>> Target Intron : 391 !||||||..!||||||!!::!!! !!!.|||! 471 bp ThrPheGlnThrLeuSerIleHisThrLeuThrAla++ 4395321 : ACGTTTCAAACGTTGTCTATTCACACGTTAACAGCCgt.................. : 4395361 392 : 1 >>>> IlePheAsnSerAlaGlySerTyrPheAlaLeuLeuArgThrIleHi : 406 :!!||||||!!!|||!.!|||||||||.!!||||||||| !!!:!! ++ValPheAsnThrAlaAlaSerTyrPheThrLeuLeuArgGlnMetGl 4395362 : .......agGTATTCAATACAGCTGCTTCGTATTTTACTTTGCTGCGACAAATGCA : 4395875 407 : sGlu : 407 .:!! nGln 4395876 : GCAA : 4395880 vulgar: NvOr77 266 407 . KQ414784.1 4394989 4395880 + 339 M 39 117 G 1 0 M 84 252 5 0 2 I 0 467 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4394990 4395880 339 + . gene_id 1 ; sequence NvOr77 ; gene_orientation + KQ414784.1 exonerate:protein2genome:local cds 4394990 4395358 . + . KQ414784.1 exonerate:protein2genome:local exon 4394990 4395358 . + . insertions 0 ; deletions 1 KQ414784.1 exonerate:protein2genome:local splice5 4395359 4395360 . + . intron_id 1 ; splice_site "GT" KQ414784.1 exonerate:protein2genome:local intron 4395359 4395829 . + . intron_id 1 KQ414784.1 exonerate:protein2genome:local splice3 4395828 4395829 . + . intron_id 0 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4395830 4395880 . + . KQ414784.1 exonerate:protein2genome:local exon 4395830 4395880 . + . insertions 0 ; deletions 0 KQ414784.1 exonerate:protein2genome:local similarity 4394990 4395880 339 + . alignment_id 1 ; Query NvOr77 ; Align 4394990 267 117 ; Align 4395107 307 252 ; Align 4395830 391 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr77 Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 321 Query range: 5 -> 177 Target range: 4393590 -> 4394417 6 : SerSerValArgIleAspGluTyrLeuTrpProAsnArgTyrLeuLeuGluLeuPh : 24 |||!.!!.! !|||||| ! |||:!! ||||||!:! !!!!! !...:!! SerLysAlaSerIleAspTyrTyrIleLeuProAsnLysIlePheCysSerIleAl 4393591 : TCTAAAGCGTCGATCGATTATTATATACTACCGAACAAGATCTTTTGTAGTATAGC : 4393645 25 : eGlyThrTrpProThrAspTyrAspGlyArgThrLeuAlaSerGlnLeuPheValA : 43 !|||! !||||||! !||| ! ! .!! !||| !|||:!!||||||!.! aGlyMetTrpProIleAspGluLysSerSerThr---ArgSerLysLeuPheAlaT 4393646 : TGGAATGTGGCCTATCGACGAGAAAAGTTCAACG---CGTAGCAAACTATTCGCAT : 4393699 44 : snPheArgValCysPheValPheValAlaIleThrGlyValLeuValProGluIle : 61 !!||||||:!! |||! !!!...!||||||!:!.!!|||!!!|||||||||||| yrPheArgLeuIlePheGlyLeuThrAlaIleSerSerValPheValProGluIle 4393700 : ACTTCCGTCTGATATTCGGATTAACGGCAATCAGTAGTGTCTTCGTGCCAGAAATT : 4393753 62 : LeuMetIleIleValTyrTrpGlyAspLeuAspValLeuThr{G} >>>> Targ : 76 :!! !|||:!: ! !!|||||||||:!! :!!|||.!!{|} MetAlaIleValTrpAsnTrpGlyAspIleArgIleLeuAla{G}+- 4393754 : ATGGCGATAGTGTGGAATTGGGGTGACATAAGAATCTTGGCA{G}gc......... : 4393801 77 : et Intron 1 >>>> {ly}ValGlyCysIleAlaThrProValSerLeuIleL : 88 311 bp {||}|||||||||:!! !||| !!|||.!!! :::| ++{ly}ValGlyCysValLeuThrThrValGlyGlnLeuL 4393802 : ................ag{GA}GTAGGATGCGTTTTAACAACAGTCGGACagttat : 4394145 89 : euPheLysValAlaTyrMetIleIleArgArgAsnArgPheHisGlyValTyrSer : 106 ||||||||::: !|||:!:||| ||||||:!!!:! :!! !:!!! !!:! euPheLysMetIleTyrLeuIleAlaArgArgAspLysThrTyrLysLeuCysAsn 4394146 : tattcaaaatgATTTACCTAATAGCGAGAAGGGACAAAACGTACAAGCTTTGCAAC : 4394199 107 : AsnLeuArgArgLeuTrpLeuAlaIleAspAspAlaGluGluPheGluProLeuGl : 125 .!.:!!||| !|||||| !:!! !|||||| !!:!!||| :!! !!! !|| GluIleArgAspLeuTrpAspSerSerAspAspProLysGluArgGlnSerTyrGl 4394200 : GAAATACGTGATCTATGGGATTCATCCGATGATCCAAAAGAAAGACAGTCCTACGA : 4394256 126 : uGluLeuAlaArgLeuAlaLysArgValThrIleGlyPhePheLeuSerCysPheS : 144 ||||||||||!.!! !|||!:!!.!:!!|||||| !|||!:!! !||||||.!.! uGluLeuAlaHisTrpAlaArgAsnLeuThrIleIlePheTyrSerSerCysMetC 4394257 : AGAGCTCGCTCATTGGGCAAGAAACCTTACGATAATCTTTTACTCGTCCTGCATGT : 4394313 145 : erAsnAsnValSerPheThrThrAlaAlaValIleAspTrpValAsnTyrAspGlu : 162 !!||| !!!!!||||||! !||||||!.!.!!|||!:: !!!.. !!!: ! ysAsnValPheThrPheThrIleAlaAlaAlaPheAspTyrPheThrIleGluTyr 4394314 : GCAACGTGTTCACATTCACGATTGCCGCAGCCTTCGATTATTTCACGATCGAATAC : 4394367 163 : ThrArgAsnAspSer<->ThrProArgHisLeuProPheAspValTrp : 177 !:! !!:!|||:!! ! ! !|||||||||||||||!!:|||||| SerValSerAspAlaAspLysSerArgHisLeuProPheGluValTrp 4394368 : AGCGTCAGCGATGCTGATAAAAGTCGACACTTGCCCTTCGAAGTCTGG : 4394417 vulgar: NvOr77 5 177 . KQ414784.1 4393590 4394417 + 321 M 30 90 G 1 0 M 39 117 S 0 1 5 0 2 I 0 307 3 0 2 S 1 2 M 91 273 G 0 3 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4393591 4394417 321 + . gene_id 2 ; sequence NvOr77 ; gene_orientation + KQ414784.1 exonerate:protein2genome:local cds 4393591 4393798 . + . KQ414784.1 exonerate:protein2genome:local exon 4393591 4393798 . + . insertions 0 ; deletions 1 KQ414784.1 exonerate:protein2genome:local splice5 4393799 4393800 . + . intron_id 1 ; splice_site "GC" KQ414784.1 exonerate:protein2genome:local intron 4393799 4394109 . + . intron_id 1 KQ414784.1 exonerate:protein2genome:local splice3 4394108 4394109 . + . intron_id 0 ; splice_site "AG" KQ414784.1 exonerate:protein2genome:local cds 4394110 4394417 . + . KQ414784.1 exonerate:protein2genome:local exon 4394110 4394417 . + . insertions 3 ; deletions 0 KQ414784.1 exonerate:protein2genome:local similarity 4393591 4394417 321 + . alignment_id 2 ; Query NvOr77 ; Align 4393591 6 90 ; Align 4393681 37 117 ; Align 4394112 77 273 ; Align 4394388 168 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr77 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 170 -> 227 Target range: 44871 -> 45042 171 : HisLeuProPheAspValTrpPheSerPheAspValGluArgSerProAsnPheGluIle : 190 ...|||! !||| !!.!!::||| !!!:!||| !!!: !|||||||||!:!|||.!! ArgLeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPhe 44872 : AGACTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTT : 44929 191 : AlaPheGlyCysGlnValIleSerSerLeuTyrCysCysThrGlyIleValGlyIleAsp : 210 .!! ! !..!|||:!!|||:!!:!!!!!|||.....!||| ! !..!!.!:!!||| ThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAsp 44930 : ACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGAT : 44989 211 : AlaThrMetMetThrPheIleLeuHisIleCysGlyHisPheArgThrIle : 227 .!! !!!::!:! !!!.|||||||||:!!||||||!!..!! !!.!:!: ThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeu 44990 : ACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTG : 45042 vulgar: NvOr77 170 227 . KQ414804.1 44871 45042 + 104 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44872 45042 104 + . gene_id 1 ; sequence NvOr77 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44872 45042 . + . KQ414804.1 exonerate:protein2genome:local exon 44872 45042 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44872 45042 104 + . alignment_id 1 ; Query NvOr77 ; Align 44872 171 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr69 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 142 -> 205 Target range: 44862 -> 45051 143 : AspGlyArgGluMetLeuLeuLysSerTyrTyrProPheAspTyrLysSerSerProThr : 162 ..!|||! !..!:!:|||!!!::::!!|||!:!|||!:!||| ! ! !||||||!.! SerGlyThrArgLeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsn 44863 : AGCGGCACCAGACTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAAT : 44920 163 : TyrGluIleMetLeuPheLeuGlnIleIleLeuAlaMetSerMetAlaIleAlaAsnAla : 182 ||||||.!!! :!!.!! !||||||||| !|||.!.! ! |||! !.!! !!.!! TyrGluPheThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThr 44921 : TACGAATTTACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACA : 44980 183 : MetThrGluSerLeuPheIleValLeuIleLeuHisAlaCysSerTyrValAspLeuLeu : 202 ..!!!:!!!!!!.!!:!!:!!||||||||||||!.!|||.!! ! :!!... !||| AlaValAspThrPheIleValMetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeu 44981 : GCCGTCGATACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTG : 45040 203 : LeuAspGlu : 205 !:!!||| ArgAsnGlu 45041 : AGAAACGAA : 45051 vulgar: NvOr69 142 205 . KQ414804.1 44862 45051 + 111 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44863 45051 111 + . gene_id 1 ; sequence NvOr69 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44863 45051 . + . KQ414804.1 exonerate:protein2genome:local exon 44863 45051 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44863 45051 111 + . alignment_id 1 ; Query NvOr69 ; Align 44863 143 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr69 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 315 -> 365 Target range: 51900 -> 52050 316 : IleThrGlyAlaMetTyrAspSerAspTrpTyrAsnIleGluSerAsnAspValLysAla : 335 |||.!!..!||| |||||||||!!:|||||||||:!:... !!!!.:!!!.!||| ! IleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLysAsnAlaLysLeu 51901 : ATAGCTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTG : 51958 336 : IleSerPheIleIleLysLysThrGlnArgProLeuSerValThrAlaGlyLysTyrIle : 355 :!! !.!!|||!!:::!::!.!!::! !||||||..!:!!|||||||||!:!!:! ! LeuLeuIleIleMetArgArgAlaArgLeuProLeuGlnIleThrAlaGlyArgPheAla 51959 : CTACTAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCAGGTAGATTTGCT : 52018 356 : ProLeuSerValThrSerPheAlaAlaIle : 365 !!!!!!!!:!!! ! !!:!:!! !:!: ThrPheThrLeuMetLeuTyrSerGlnVal 52019 : ACTTTCACTCTGATGCTGTATTCACAGGTa : 52050 vulgar: NvOr69 315 365 . KQ414804.1 51900 52050 + 101 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51901 52050 101 + . gene_id 2 ; sequence NvOr69 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 51901 52050 . + . KQ414804.1 exonerate:protein2genome:local exon 51901 52050 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51901 52050 101 + . alignment_id 2 ; Query NvOr69 ; Align 51901 316 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr76 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 171 -> 223 Target range: 44871 -> 45027 172 : ArgLeuProPheAspValTrpPheGlyPheAspLeuGlnArgThrProAsnPheGluLeu : 191 ||||||! !||| !!.!!::||| !!:!||| !.!. !!:!||||||!:!|||!!! ArgLeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPhe 44872 : AGACTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTT : 44929 192 : ValPheValGlyGlnSerIleSerAlaIlePheCysCysPheGlyIleValGlyLeuAsp : 211 ..! ! :!!!.!|||! !|||:!!|||.!!!:!.....! ! ! !..!!.!:!!||| ThrValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAsp 44930 : ACAGTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGAT : 44989 212 : ThrAlaMetMetAlaLeuIleLeuHisValCysGly : 223 ||| !!!::!: !||||||||||||||||||||| ThrPheIleValMetLeuIleLeuHisValCysGly 44990 : ACTTTCATTGTAATGTTAATTCTGCACGTTTGTGGA : 45027 vulgar: NvOr76 171 223 . KQ414804.1 44871 45027 + 104 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44872 45027 104 + . gene_id 1 ; sequence NvOr76 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44872 45027 . + . KQ414804.1 exonerate:protein2genome:local exon 44872 45027 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44872 45027 104 + . alignment_id 1 ; Query NvOr76 ; Align 44872 172 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr76 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 178 -> 246 Target range: 36782 -> 36986 179 : PheGlyPheAspLeuGlnArgThrProAsnPheGluLeuValPheValGlyGlnSerIle : 198 ||| !!:!||| !.!.!:!!:!||||||!:!|||:!!..!!:::!!||||||! !:!: PheProTyrAspThrAsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheVal 36783 : TTTCCATACGACACGAATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTG : 36840 199 : SerAlaIlePheCysCysPheGlyIleValGlyLeuAspThrAlaMetMetAlaLeuIle : 218 .!!.!!:!:!!. !!....!. !! ! ! !!!!!|||||| !:!: !.!|||:!: GlyThrValLeuSerAlaIleCysTyrSerCysPheAspThrPheValAlaValLeuVal 36841 : GGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTG : 36900 219 : LeuHisValCysGlyHisPheArgValIleGlyAlaArgLeuArgAlaIleGlyGlnGly : 238 ||||||:!!||||||!!.!!.! !|||:!! !! ! !|||..! !:!!!.!.!. ! LeuHisIleCysGlyGlnLeuThrValLeuArgIleAlaLeuGluAsnLeuAlaAsnThr 36901 : TTACACATATGCGGCCAATTAACTGTTCTCCGCATTGCCCTCGAGAATCTTGCTAACACG : 36960 239 : MetHisAsnAspValGlnSerLys : 246 ! !!.||| ! ! |||||| ThrIleLysAspAsnTyrSerLys 36961 : ACAATAAAAGACAACTACAGCAAG : 36986 vulgar: NvOr76 178 246 . KQ414804.1 36782 36986 + 101 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36783 36986 101 + . gene_id 2 ; sequence NvOr76 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36783 36986 . + . KQ414804.1 exonerate:protein2genome:local exon 36783 36986 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36783 36986 101 + . alignment_id 2 ; Query NvOr76 ; Align 36783 179 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr68 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 309 -> 367 Target range: 34402 -> 34659 310 : GlnValTyrAspAlaLeuTrpTyrLysAlaGluAlaThrGluMetLysAlaIleLeuPhe : 329 ...!.!|||!!::!! !||||||!!.!.!..! !! !!||| |||..!:!!|||||| SerAlaTyrGluSerAsnTrpTyrAsnValSerProProGluAlaLysCysLeuLeuPhe 34403 : TCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCAGAAGCCAAGTGCCTTTTATTT : 34460 330 : IleIleLysArgAlaGlnThrProLeuSerLeuSerAlaGlyLysPheIleAlaLeuSer : 349 |||!!: ! |||.!! !||||||!!!|||!!!||||||||||||! !.!!!!!||| IleMetHisArgThrAlaArgProLeuCysLeuThrAlaGlyLysPheSerThrPheSer 34461 : ATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCAGGAAAATTCAGTACCTTCTCC : 34520 350 : AlaGlnThrPheThrLeu >>>> Target Intron 1 >>>> IleIleLysThrS : 360 !:!!! !|||!:! ! 83 bp |||:!:||||||: MetGluMetPheSerThr++ ++IleLeuLysThrA 34521 : ATGGAAATGTTCAGTACTgt.........................agattcTGAAAACAG : 34636 361 : erPheSerTyrLeuSerValLeu : 367 !!.!..!!||||||||||||||| laMetGlyTyrLeuSerValLeu 34637 : CAATGGGATATCTTTCAGTTCTC : 34659 vulgar: NvOr68 309 367 . KQ414804.1 34402 34659 + 120 M 46 138 5 0 2 I 0 79 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34403 34659 120 + . gene_id 1 ; sequence NvOr68 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34403 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34403 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34659 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34659 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34403 34659 120 + . alignment_id 1 ; Query NvOr68 ; Align 34403 310 138 ; Align 34624 356 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr75PSE Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 71 -> 128 Target range: 8893 -> 9064 72 : ValAlaProThrPheCysSerLeuSerSerGluLeuIleLysLeuLeuValPheCysLysAs : 92 |||::! !!!.!!!. |||:!!! !! ! !||||||||| !||| ! ! !:! ValSerThrAsnLeuLeuSerValIleLeuThrThrIleLysLeuThrValValLeuIleHi 8894 : GTTAGTACCAACTTACTGAGCGTGATCTTAACTACGATCAAGCTAACTGTCGTACTAATACA : 8954 93 : nArgGlnArgValMetLysLeuAsnLysTyrMetTyrGluAsnPheTrpAsnValGluTyrA : 113 !!:! !..! !!|||!..|||! ! ! ||||||||||||:!!||||||||||||!!:|||: sLysValGluPheMetSerLeuIleAspTyrMetTyrGluHisPheTrpAsnValAspTyrA 8955 : CAAAGTGGAATTCATGAGTCTGATTGATTACATGTACGAACATTTCTGGAACGTGGATTACG : 9017 114 : snLysGluGluThrValLeuPheAsnLysCysAsnAsnTrpCysIle : 128 !! .!.|||! ! !:!!.!.:::...|||...... |||||| spLeuHisGluLysArgIleMetAspAsnCysLysLysThrCysIle 9018 : ATCTTCACGAGAAAAGAATTATggataattgtaaaaaaactTGCATC : 9064 vulgar: NvOr75PSE 71 128 . KQ414828.1 8893 9064 + 102 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 8894 9064 102 + . gene_id 1 ; sequence NvOr75PSE ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 8894 9064 . + . KQ414828.1 exonerate:protein2genome:local exon 8894 9064 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 8894 9064 102 + . alignment_id 1 ; Query NvOr75PSE ; Align 8894 72 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr76 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 16 -> 239 Target range: 284538 -> 285213 17 : AsnArgTyrThrLeuGluPheLeuGlyPheTrpProProGluProGlyThrSerSerI : 36 ||||||!:: !|||:!! :!!||| ! ||||||! !...! ! !!..!!!!!!!: AsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrL 284539 : AACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCT : 284596 37 : leSerLysTyrPheAlaAlaPheArgIleValPheSerIleLeuAlaIleGlyPheLe : 55 !:..!||| ! !:!!!.! !!! ! :!!.!!||| !!!! !||||||||||| euGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLe 284597 : TGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCT : 284653 56 : uPheValPro<->GluIleMetMetValValValPheTrpGlyAspIleThrValLeu : 73 |!!.|||||| ! :!: ! |||:!!! ! ||||||:!! !..! ! uLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLys 284654 : CTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAG : 284710 74 : ThrGlyValGlyCysValSerThrThrLeuAlaGlnLeuAsnPheLysMetLeuTyrV : 93 ! ! !:!! ! !! ! !!:! !! ! !..! ! .!!||| ! ! !: IleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleL 284711 : ATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTC : 284770 94 : alLeuAlaArgArgArgArgPheCysArgAlaTyrArgLysThrArgGluLeuTrpSe : 112 !!:!!:!!||| !! !!!:!.!! !!!:!..! !:! ! ! !|||! ! !||||| euIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIleArgAlaAspTrpSe 284771 : TAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGACTGGTC : 284827 113 : rMetThrAspHisGluSerGluLeuArgLysGlyLeuGluLysLeuAlaGlyGlnAla : 131 |:!:||| ! .!.|||::: ...::: ! !! !.!! ! rLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMetArgAspSerAlaArg 284828 : TCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGA : 284884 132 : LysLysTyrSerIleAlaPhePhePheThrCysPheCysAsnAsnIleSerPheThrT : 151 ! ! |||:!:|||.!!|||! !.!! !!||| !!::! !.!!||| ! IleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGlyPhePheT 284885 : ATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCT : 284944 152 : hrLeuSerValValValTrpLeuAsnTyrAsnAlaGlnGluAsnLysSerLeuLeuGl : 170 ! !!!!|||:!! !! !! !!.. ..!.!!:!! ! ! ! !:! ! !! yrThrThrValMetProLeuCysThrValArgThrGluIleIleAspAsnGluThrVa 284945 : ACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAACGAGACCGT : 285001 171 : uArgArgLeuProPheAspValTrpPheGly<->PheAspLeuGlnArgThrProAsn : 188 !||| !! ! !!||| :!!!:: !||| .!!|||! !!::! !!:!|||::: lArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSer 285002 : GAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCG : 285058 189 : PheGluLeuValPheValGlyGlnSerIleSerAlaIlePheCysCysPheGlyIleV : 208 ||||||:!!||| !! !|||!!!:!::!!|||.!! !! ! !! ! !! !| PheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSerValThrV 285059 : TTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTG : 285118 209 : alGlyLeuAspThrAlaMetMetAlaLeuIleLeuHisValCysGlyHisPheArgVa : 227 ||||| ! !!:! ! !.!!!!:!!:!!||||||||||||!!.||||||:! alGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGlyGlnPheArgIl 285119 : TTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGAT : 285175 228 : lIleGlyAlaArgLeuArgAlaIleGlyGlnGlyMet : 239 !:!!! !.!!!:!||| ! !:!!! !.!.|||:!! eLeuValThrLysLeuAspLysLeuValAspGlyVal 285176 : ACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTG : 285213 vulgar: NvOr76 16 239 . KQ414889.1 284538 285213 + 119 M 42 126 G 0 3 M 122 366 G 0 3 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284539 285213 119 + . gene_id 1 ; sequence NvOr76 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284539 285213 . + . KQ414889.1 exonerate:protein2genome:local exon 284539 285213 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284539 285213 119 + . alignment_id 1 ; Query NvOr76 ; Align 284539 17 126 ; Align 284668 59 366 ; Align 285037 181 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr76 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 16 -> 239 Target range: 278591 -> 279266 17 : AsnArgTyrThrLeuGluPheLeuGlyPheTrpProProGluProGlyThrSerSerI : 36 ||||||!:: !|||:!! :!!||| ! ||||||! !...! ! !!..!!!!!!!: AsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrL 278592 : AACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCT : 278649 37 : leSerLysTyrPheAlaAlaPheArgIleValPheSerIleLeuAlaIleGlyPheLe : 55 !:..!||| ! !:!!!.! !!! ! :!!.!!||| !!!! !||||||||||| euGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLe 278650 : TGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCT : 278706 56 : uPheValPro<->GluIleMetMetValValValPheTrpGlyAspIleThrValLeu : 73 |!!.|||||| ! :!: ! |||:!!! ! ||||||:!! !..! ! uLeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLys 278707 : CTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAG : 278763 74 : ThrGlyValGlyCysValSerThrThrLeuAlaGlnLeuAsnPheLysMetLeuTyrV : 93 ! ! !:!! ! !! ! !!:! !! !.!!..! !!...!!||| ! ! !: IleLysMetIleGlyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleL 278764 : ATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTC : 278823 94 : alLeuAlaArgArgArgArgPheCysArgAlaTyrArgLysThrArgGluLeuTrpSe : 112 !!:!!:!!||| !! !!!:!.!! !!!:!..! !.! ! ! !||| ! !||||| euMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSe 278824 : TAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTC : 278880 113 : rMetThr<-><->AspHisGluSerGluLeuArgLysGlyLeuGluLysLeuAlaGly : 129 |:!:||| !!!..:::...||| |||::: :!!..! ! !||| !! rLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArg 278881 : TCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGA : 278937 130 : GlnAlaLysLysTyrSerIleAlaPhePhePheThrCysPheCysAsnAsnIleSerP : 149 !.!::!...! :!!||| ! ! ! ! ! !:!! !..!...:!!! !! IleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheT 278938 : ATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCT : 278997 150 : heThrThrLeuSerValValValTrpLeuAsnTyrAsnAlaGlnGluAsnLysSerLe : 168 :!|||.!!:!!! ! !:!! !! :!!..! .!. ! !!:|||:!!!!!:! yrThrAlaValMetProLeuPheAlaValArgThrGluIleIleAspAsnGluThrVa 278998 : ACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGT : 279054 169 : uLeuGluArgArgLeuProPheAspValTrpPheGlyPheAspLeuGlnArgThrPro : 187 ! !...!:! !!!!|||.!! !! ! ! .!! .!!|||! !!::! !!:!||| lArgSerGlnAlaPheProIleTyrArgGlyLeu---LeuAspProArgThrSerPro 279055 : GAGATCTCAAGCGTTCCCGATCTATCGCGGCCTC---CTCGATCCGCGTACCAGCCCG : 279108 188 : AsnPheGluLeuValPheValGlyGlnSerIleSerAlaIlePheCysCysPheGlyI : 207 :::||||||:!!||| !! !|||!!!:!::!!|||.!! !!! ! !! ! !! SerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValT 279109 : TCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCA : 279168 208 : leValGlyLeuAspThrAlaMetMetAlaLeuIleLeuHisValCysGlyHisPheAr : 226 !|||||| ! !!:! !!!: !.!!!!:!!:!!||||||||||||!!.||||| hrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCysGlyGlnPheAr 279169 : CTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAG : 279225 227 : gValIleGlyAlaArgLeuArgAlaIleGlyGlnGlyMet : 239 |:!!:!!! !.!!!:!||| ! !:!! !.!.|||:!! gIleLeuValThrLysLeuAspLysLeuIleAspGlyVal 279226 : GATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTG : 279266 vulgar: NvOr76 16 239 . KQ414889.1 278591 279266 + 107 M 42 126 G 0 3 M 56 168 G 0 6 M 65 195 G 1 0 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278592 279266 107 + . gene_id 2 ; sequence NvOr76 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278592 279266 . + . KQ414889.1 exonerate:protein2genome:local exon 278592 279266 . + . insertions 9 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 278592 279266 107 + . alignment_id 2 ; Query NvOr76 ; Align 278592 17 126 ; Align 278721 59 168 ; Align 278895 115 195 ; Align 279090 181 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr77 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 84 -> 237 Target range: 204452 -> 204908 85 : SerLeuIleLeuPheLysValAlaTyrMetIleIleArgArgAsnArgPheHisGlyV : 104 |||:!! !!!|||||| !:!! !!!::!! !|||! !:!!!:!.!!!!. ! SerIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysS 204453 : AGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGA : 204510 105 : alTyrSerAsnLeuArgArgLeuTrpLeuAlaIleAspAspAlaGluGluPheGluPr : 123 !! !:!!.!:!!|||||| !|||:!!! ! ! ||| |||.!. ! erLeuAsnThrIleArgArgAspTrpIleGluAlaThrAsp---GluAsnArgLeuIl 204511 : GTTTGAACACCATCAGACGCGACTGGATAGAGGCTACGGAT---GAAAATCGGTTGAT : 204564 124 : oLeuGluGluLeuAlaArgLeuAlaLysArgValThrIleGlyPhePheLeuSerCys : 142 !!!!.....! !|||!:!:!!!.!::!|||||| !:!: ! ! !!!! ePheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMet 204565 : TTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATG : 204621 143 : PheSerAsnAsnValSerPheThrThrAlaAlaValIleAspTrpValAsnTyrAspG : 162 !:!.!!..!..!:!!!!!!:!! !||| ! ! !:!: ! ! !... !! TyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeu---LeuArgGlyThrIleV 204622 : TACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTG---TTGAGAGGAACGATCG : 204678 163 : luThrArgAsnAspSerThrProArgHisLeuProPheAspValTrpPhe<->SerPh : 180 !|||! !:!!:!! !||| !|||! ||||||! ! |||:::||| || alThrProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePh 204679 : TAACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctt : 204735 181 : eAspValGluArgSerProAsnPheGluIleAlaPheGlyCysGlnValIleSerSer : 199 |:::! !:!!||||||||||||!:!||||||!.!||| ! |||:!!!!::!!.!! eAsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGly 204736 : taacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGT : 204792 200 : LeuTyrCysCysThrGlyIleValGlyIleAspAlaThrMetMetThrPheIleLeuH : 219 !!! ! !! !.!!! !||| !|||! ! !!.!! ! ! !|||:!!|||| PheValThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuH 204793 : TTTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCC : 204852 220 : isIleCysGlyHisPheArgThrIleAlaAlaLysTrpArgAlaIleGlySerLys : 237 || |||.!! .!.|||! !:!:!.! !||| !!.!|||:!!! !..!||| isAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLys 204853 : ACGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAG : 204908 vulgar: NvOr77 84 237 . KQ414889.1 204452 204908 + 101 M 33 99 G 1 0 M 37 111 G 1 0 M 22 66 G 0 3 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204453 204908 101 + . gene_id 1 ; sequence NvOr77 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204453 204908 . + . KQ414889.1 exonerate:protein2genome:local exon 204453 204908 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 204453 204908 101 + . alignment_id 1 ; Query NvOr77 ; Align 204453 85 99 ; Align 204552 119 111 ; Align 204663 157 66 ; Align 204732 179 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr74PSE Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 81 -> 187 Target range: 1698592 -> 1699139 82 : LeuMetLysLeuPheValCysPheLysAsnArgGluArgValMetGlnLeuAsnGl : 100 |||:!:|||||||||||| |||! !:!!|||:!!..! !!!!::!!||| LeuLeuLysLeuPheValValPheIleHisArgLysGluPheIleGluLeuLeuVa 1698593 : CTGTTAAAGCTGTTCGTTGTATTCATACACAGGAAAGAATTCATCGAACTgcttgt : 1698647 101 : uTyrMetTyrGluAsnPheTrpAsnAlaLysTyrAsnArgGluGluUnkLysIleP : 119 |||||||||:::|||||||||:!! !!!.|||:!! !!.!.||| !:!:. lTyrMetTyrLysAsnPheTrpHisLeuAsnTyrAspCysAsnGluLeuLeuLeuL 1698648 : atatatgtacaaaaatttttggcACCTCAATTACGATTGCAACGAACTACTACTGC : 1698704 120 : heAsnGluCysAsnSerTrpCysIleGluAlaLeuAlaCysPheLeuValThrMet : 137 !..!.!!:|||!..!!! !!! ! !..!:!!.!!! .!! ! !! ! euGlnAspCysArgArgIleSerThrIleCysIleThrLeuIleAsnPheCysAla 1698705 : TGCAAGACTGCAGAAGAATTAGCACTATATGTATCACGTTGATTAACTTCTGTGCT : 1698758 138 : GlnCysIleSerValHisLeuMetLeuAlaProHisLeuGlu{P} >>>> Targ : 152 ||| !!! !! !||| !! !:!!|||.!!||| :!! !{ } GlnGlyThrIleValSerTyrValLeuThrPro---IleIle{A}++ 1698759 : CAAGGCACAATTGTCAGCTACGTGCTAACACCT---ATTATA{G}gt......... : 1698803 153 : et Intron 1 >>>> {ro}SerAspAsnSerThrSerGlyGluLysIlePheP : 164 232 bp {!!}::: ... ..!|||..!!!:!:!:!:.!!| ++{la}AsnIleGlyArgAsnSerSerAspArgValLeuP 1698804 : ................ag{ca}aatattggaagaaaCAGTTCCGATAGAGTGCTCC : 1699068 165 : roPheProLeuTyrValAsnTyrProIlePheAsnSerProValTyrGluIleLeu : 182 ||||| !:!!!::|||:!!! |||:!:! ! ||||||..!|||||||||:!! roPheAsnMetTrpValAspLeuProLeuSerValSerProThrTyrGluIleVal 1699069 : CATTCAACATGTGGGTTGATTTGCCGCTGTCTGTGTCACCAACGTACGAAATAGTG : 1699122 183 : PheValLeuGluVal : 187 |||||||||:!!||| PheValLeuGlnVal 1699123 : TTCGTGCTTCAGGTA : 1699139 vulgar: NvOr74PSE 81 187 . KQ414915.1 1698592 1699139 + 147 M 67 201 G 1 0 M 2 6 S 0 1 5 0 2 I 0 228 3 0 2 S 1 2 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1698593 1699139 147 + . gene_id 1 ; sequence NvOr74PSE ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1698593 1698800 . + . KQ414915.1 exonerate:protein2genome:local exon 1698593 1698800 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1698801 1698802 . + . intron_id 1 ; splice_site "Gt" KQ414915.1 exonerate:protein2genome:local intron 1698801 1699032 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699031 1699032 . + . intron_id 0 ; splice_site "Ag" KQ414915.1 exonerate:protein2genome:local cds 1699033 1699139 . + . KQ414915.1 exonerate:protein2genome:local exon 1699033 1699139 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1698593 1699139 147 + . alignment_id 1 ; Query NvOr74PSE ; Align 1698593 82 201 ; Align 1698794 150 6 ; Align 1699035 153 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr75PSE Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 163 Query range: 2 -> 197 Target range: 1697503 -> 1699166 3 : LysSerAsnValSerLysLysMetGlnSerIleValIleThrValValLeuMetLy : 21 |||!.!... ! !! ||| :!!:!::!!!!:||| ! !!|||||||| LysLysGlySerHisThrLysAspPheAlaLeuLeuMetThrSerPheLeuMetLy 1697504 : AAAAAAGGGTCGCACACCAAAGATTTTGCTCTGTTAATGACGTCGTTTTTAATGAA : 1697558 22 : sValLeuGlyMetTrpTyrValSerAsnArgLysGluLysMetIleAlaAspAlaL : 40 |:!!:!!|||:!:|||! !.!!.!:!!!!!||||||:!! ! ! ! sIleValGlyLeuTrpLeuAlaLysAspSerLysGluGluArgLysArgArgTyrT 1697559 : GATCGTCGGTCTTTGGTTAGCGAAAGACAGCAAGGAGGAACGCAAGCGTCGGTACA : 1697615 41 : euLeuSerAlaValThrAlaSerValLeuPheSerPheValIleGlnThrAsnGlu : 58 !|||! ! !..!..!!.!:!!:!!||||||.!! ! !:!:||| !!..!!: hrLeuIleTyrThrValValAlaIleLeuPheGlyValTrpValGlnPheArgAsp 1697616 : CTTTGATCTATACGGTGGTCGCGATTTTGTTTGGAGTGTGGGTGCAGTTCAGAGAC : 1697669 59 : Phe{T} >>>> Target Intron 1 >>>> {yr}AsnAlaArgAsnSerLe : 66 |||{!} 849 bp { !}|||... ...|| Phe{C}-+ ++{ys}AsnThrIlePheGlnLe 1697670 : TTC{T}at.........................ag{gc}aatacaatttttcaatt : 1698542 67 : uMetMetMetCysSerValAlaProThrPheCysSerLeuSerSerGluLeuIleL : 85 | ..!! !..!||| !!.!.!! !!!!|||! !! !! !|||:!!| u***AspCysAlaTyrThrAlaCysAsnIleLeuCysLeuIleMetValLeuLeuL 1698543 : ataggACTGTGCTTACACCGCTTGTAACATTCTCTGCCTGATTATGGTACTGTTAA : 1698599 86 : ysLeuLeuValPheCysLysAsnArgGlnArgValMetLysLeuAsnLysTyrMet : 103 |||||!!!||| ! ! !! !:!!|||:!!..! !!!!::!!||| |||||| ysLeuPheValValPheIleHisArgLysGluPheIleGluLeuLeuValTyrMet 1698600 : AGCTGTTCGTTGTATTCATACACAGGAAAGAATTCATCGAACTgcttgtatatatg : 1698653 104 : TyrGluAsnPheTrpAsnValGluTyrAsnLysGluGluThrValLeuPheAsnLy : 122 |||:::|||||||||:!!:!!.!.|||:!! .!.||| !:!!|||.!..!. ! TyrLysAsnPheTrpHisLeuAsnTyrAspCysAsnGluLeuLeuLeuLeuGlnAs 1698654 : tacaaaaatttttggcACCTCAATTACGATTGCAACGAACTACTACTGCTGCAAGA : 1698710 123 : sCysAsnAsnTrpCysIleLysAlaLeuIleCysTyrLeuIleLeuLeuGlnIleI : 141 |||!..!.. !!! !! !..!:!!! ! ! !.!!! ! !||| !! pCysArgArgIleSerThrIleCysIleThrLeuIleAsnPheCysAlaGlnGlyT 1698711 : CTGCAGAAGAATTAGCACTATATGTATCACGTTGATTAACTTCTGTGCTCAAGGCA : 1698767 142 : leValValHisLeuThrIleAlaProTyrLeu{G} >>>> Target Intron : 152 !:!!||| !! !..!:!!.!!||| !:!!{!} 232 bp hrIleValSerTyrValLeuThrProIleIle{A}++ 1698768 : CAATTGTCAGCTACGTGCTAACACCTATTATA{G}gt................... : 1698803 153 : 2 >>>> {lu}ProArgHisAsnThrThrSerArgGluIleGluLeuProPhePr : 167 { !} .....!!:!||| !..!:!: ||||||||| ++{la}AsnIleGlyArgAsnSerSerAspArgVal---LeuProPheAs 1698804 : ......ag{ca}aatattggaagaaaCAGTTCCGATAGAGTG---CTCCCATTCAA : 1699074 168 : oIleTyrIleAspTyrProIleHisGluThrProValTyrGluIleLeuPheIleL : 186 !!!:!:::!!|||! |||:!: !! !:!!|||..!|||||||||:!!|||:!:| nMetTrpValAspLeuProLeuSerValSerProThrTyrGluIleValPheValL 1699075 : CATGTGGGTTGATTTGCCGCTGTCTGTGTCACCAACGTACGAAATAGTGTTCGTGC : 1699131 187 : euGluValPheGlyLeuGlnGlyValIleLeuCys : 197 ||:!!||| ! !|||.!...! !! !!!!||| euGlnValArgLeuLeuAsnSerCysSerPheCys 1699132 : TTCAGGTACGTCTACTCAATTCATGCAGCTTTTGT : 1699166 vulgar: NvOr75PSE 2 197 . KQ414915.1 1697503 1699166 + 163 M 57 171 S 0 1 5 0 2 I 0 845 3 0 2 S 1 2 M 91 273 S 0 1 5 0 2 I 0 228 3 0 2 S 1 2 M 10 30 G 1 0 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1697504 1699166 163 + . gene_id 1 ; sequence NvOr75PSE ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1697504 1697675 . + . KQ414915.1 exonerate:protein2genome:local exon 1697504 1697675 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1697676 1697677 . + . intron_id 1 ; splice_site "AT" KQ414915.1 exonerate:protein2genome:local intron 1697676 1698524 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1698523 1698524 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1698525 1698800 . + . KQ414915.1 exonerate:protein2genome:local exon 1698525 1698800 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1698801 1698802 . + . intron_id 2 ; splice_site "Gt" KQ414915.1 exonerate:protein2genome:local intron 1698801 1699032 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1699031 1699032 . + . intron_id 1 ; splice_site "Ag" KQ414915.1 exonerate:protein2genome:local cds 1699033 1699166 . + . KQ414915.1 exonerate:protein2genome:local exon 1699033 1699166 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1697504 1699166 163 + . alignment_id 1 ; Query NvOr75PSE ; Align 1697504 3 171 ; Align 1698527 61 273 ; Align 1699035 153 30 ; Align 1699065 164 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr66 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 262 -> 373 Target range: 807254 -> 807587 263 : ThrGlyPheValIleIleThrAlaMetGluSerAlaAsnIleMetLeuLeuValLysP : 282 ||||||||||||.!!:!:..!|||:!!...!!! !:!!! !:!: ! !:!!!:! ThrGlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgS 807255 : ACAGGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGA : 807312 283 : heMetThrPheIleIleAlaMetLeuAlaGlnValSerTyrPheCysPheAlaGlyGl : 301 !.!...!.!.!!::!:.!!:!!||| !|||:!!! ! !!:!..!!:!||||||.! erPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807313 : GCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 302 : nTyrLeuLeuAsnLysGlyGluSerIleValGluMetIleAsnSerSerPheTrpTyr : 320 . ||| !:::::! !|||..!|||!.!:!! ! !!..!|||.!!|||||| nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 321 : AsnSerGlnCysLysAspValLysValLeuIlePheValLeuThrAsnAlaGlnLysP : 340 ..!!!!!!. ! ! ! !.!!:!! !|||:!!!!.:!!:!! !...!.!.!...!| ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 341 : roLeuThrValSerGlyAlaAsnIlePheAsnLeuSerAlaGluThrPheThrMetIl : 359 ||! ! !:!!!!!!.!!.!!!..!! !! :!!!:! ! ||||||! ! !|| roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 360 : eValLysThrSerAlaSerTyrLeuSerValLeuArgAlaMet : 373 |:!!|||.!!|||!.!|||||||||||||||:!!!:!!.!||| eLeuLysAlaSerGlySerTyrLeuSerValMetLysValMet 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: NvOr66 262 373 . KQ414940.1 807254 807587 + 144 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807255 807587 144 + . gene_id 1 ; sequence NvOr66 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807255 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807255 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807255 807587 144 + . alignment_id 1 ; Query NvOr66 ; Align 807255 263 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr65 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 265 -> 375 Target range: 807254 -> 807581 266 : ValGlyTyrMetPheIleAsnLeuThrIleAsnLysAspAsnIleSerAlaLeuLeuL : 285 ..!|||!:!:!:|||:!: ! ! !! !!..|||||||||:!!:!!||| ||| ThrGlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAla---LeuA 807255 : ACAGGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCA---TTGA : 807309 286 : euCysIleAlaTyrMetPheThrAlaLeuSerAlaValGlySerTyrCysIleAlaGl : 304 ! !!.!!!.! ||| ! ||| !|||! ! !:!! ! !|||..! !||||| rgSerPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGl 807310 : GGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGG : 807366 305 : yGluTyrLeuMetSerGlnGlySerLeuIlePheGluLysLeuTyrAspCysProTrp : 323 |.!. ||| !|||!:! !..! !||| :!! !||||||! !! !||| yAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrp 807367 : CAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGG : 807423 324 : TyrLysPheLysProValAspThrLysThrPheIleIleMetLeuMetLysSerArgH : 343 |||:::! ! ! ! !! .!!!:! !.!!:!!:!:!!::!! ::!.!!!.! TyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnS 807424 : TACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATT : 807483 344 : isSerValThrIleThrAlaGlyAsnPheGlyAspLeuSerLeuValTyrPheThrAs : 362 !! ! !||||||||||||!!.|||! ! :!!!:!||| !! !|||! !.! erProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGl 807484 : CGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGA : 807540 363 : nIleIleLysThrSerValSerTyrLeuSerLeuValArg : 375 .|||:!:|||.!!|||! !||||||||||||:!!:!!!:! uIleLeuLysAlaSerGlySerTyrLeuSerValMetLys 807541 : GATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: NvOr65 265 375 . KQ414940.1 807254 807581 + 129 M 17 51 G 1 0 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807255 807581 129 + . gene_id 1 ; sequence NvOr65 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807255 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807255 807581 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 807255 807581 129 + . alignment_id 1 ; Query NvOr65 ; Align 807255 266 51 ; Align 807306 284 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr68 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 197 Query range: 259 -> 368 Target range: 807254 -> 807581 260 : ThrGlyPheValValLeuThrMetAsnSerAlaAsnGluIleValValMetIleLysT : 279 |||||||||||| !!|||..! |||.!!!!.!!:! !|||!.! :!:!:! ThrGlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgS 807255 : ACAGGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGA : 807312 280 : yrIleMetLeuTyrPheThrLeuLeuTrpGlnSerPheSerPheCysPheAlaGlyGl : 298 !.!!:!:||| ! ||||||||| ||| !!:! !!:!..!!:!||||||.! erPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807313 : GCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 299 : nHisLeuLeuAsnLysSerAspMetIleProTyrGlnValTyrAspAlaLeuTrpTyr : 317 . ||| !:::::!!!!!!: ||| !! ! !.!||||||:!!||||||||| nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 318 : LysAlaGluAlaThrGluMetLysAlaIleLeuPheIleIleLysArgAlaGlnThrP : 337 :::..!.!.!.! !! ! !:!! !:!!|||!!.|||||| ! |||!.!.!.:!!| ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 338 : roLeuSerLeuSerAlaGlyLysPheIleAlaLeuSerAlaGlnThrPheThrLeuIl : 356 ||! ! !!:!!!!!||||||||||||:!! !!:!!!:! ! ||||||! ! !|| roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 357 : eIleLysThrSerPheSerTyrLeuSerValLeuLys : 368 |:!:|||.!!||| !|||||||||||||||:!!||| eLeuLysAlaSerGlySerTyrLeuSerValMetLys 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: NvOr68 259 368 . KQ414940.1 807254 807581 + 197 M 109 327 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807255 807581 197 + . gene_id 1 ; sequence NvOr68 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807255 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807255 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807255 807581 197 + . alignment_id 1 ; Query NvOr68 ; Align 807255 260 327 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr69 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 197 Query range: 268 -> 377 Target range: 807254 -> 807581 269 : ThrGlyPheValMetIleThrAlaLeuGluSerLysAspIleValLeuLeuIleLysP : 288 ||||||||||||.!.:!:..!||||||...!!!||||||! !||| ! !:!:!:! ThrGlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgS 807255 : ACAGGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGA : 807312 289 : heAlaThrPheIleTrpPheLeuLeuTrpGlnIlePheSerPheCysPheAlaGlyGl : 307 ! !..!.!.!!: ! !|||||| |||:!:!:! !!:!..!!:!||||||.! erPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807313 : GCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 308 : nTyrLeuLeuAsnLysGlyGluThrIleThrGlyAlaMetTyrAspSerAspTrpTyr : 326 . ||| !:::::! !||| !|||.!! !||| ||||||||| !|||||| nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 327 : AsnIleGluSerAsnAspValLysAlaIleSerPheIleIleLysLysThrGlnArgP : 346 ..! !.!..!!:!!! !.!!:!! !:!! !!!.|||||| ! ::! !.!. !| ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 347 : roLeuSerValThrAlaGlyLysTyrIleProLeuSerValThrSerPheAlaAlaIl : 365 ||! ! !!:!!||||||||||||!:!:!!|||:!!!:!:!! !!!!||| !! !|| roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 366 : eValLysThrSerPheSerTyrLeuSerValLeuArg : 377 |:!!|||.!!||| !|||||||||||||||:!!!:! eLeuLysAlaSerGlySerTyrLeuSerValMetLys 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: NvOr69 268 377 . KQ414940.1 807254 807581 + 197 M 109 327 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807255 807581 197 + . gene_id 1 ; sequence NvOr69 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807255 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807255 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807255 807581 197 + . alignment_id 1 ; Query NvOr69 ; Align 807255 269 327 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr67 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 266 -> 377 Target range: 807254 -> 807587 267 : ThrGlyPheValIleValThrAlaMetGluSerAlaAsnIleIleLeuLeuPheLysP : 286 ||||||||||||.!!:!!..!|||:!!...!!! !:!!! !:!! ! !!!.!:! ThrGlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgS 807255 : ACAGGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGA : 807312 287 : heIleLeuTyrIleIleValMetLeuSerGlnAlaPheThrPheCysIleAlaGlyGl : 305 !.!!:!! !!::!:..!:!!|||! !||| !!:! !!:!..! !||||||.! erPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807313 : GCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 306 : nTyrLeuArgAsnGluGlyGluSerIleIleHisGluIleTyrAspCysLeuTrpTyr : 324 . |||..!:::..! !|||..!||| !!!.! !||||||! !||||||||| nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 325 : TyrThrGluProLysGluIleLysSerLeuIlePheValLeuLysSerAlaGlnIleP : 344 ! !.!. ! ! ! ! !!:!..!|||:!!!!.:!!:!! ! !!!.!.!. | ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 345 : roLeuThrLeuGlyGlyGlyLysLeuPheGluLeuSerThrAsnSerPheThrMetIl : 363 ||! ! !:!! !!.!||||||!!! !! !:!!!:! ! !!!!|||! ! !|| roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 364 : eValLysThrSerValSerTyrLeuSerValLeuArgAlaVal : 377 |:!!|||.!!|||! !|||||||||||||||:!!!:!!.!:!! eLeuLysAlaSerGlySerTyrLeuSerValMetLysValMet 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: NvOr67 266 377 . KQ414940.1 807254 807587 + 151 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807255 807587 151 + . gene_id 1 ; sequence NvOr67 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807255 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807255 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807255 807587 151 + . alignment_id 1 ; Query NvOr67 ; Align 807255 267 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr81 Target: KQ414583.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold34, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 290 -> 373 Target range: 620380 -> 620697 291 : SerAspPheValAlaLeuLeuSerTyrLeuSerCysMetLeuValGlnIlePheLeuT : 310 ||||||!!. !!!.!:!!!!!! !:!!:!!!!!|||||| ! !|||||||||:!!| SerAspLeuPheGlyMetPheMetHisMetCysCysMetThrTyrGlnIlePheIleT 620381 : TCCGATTTGTTTGGTATGTTTATGCATATGTGCTGTATGACATATCAAATCTTTATAT : 620438 311 : yrCysTrpTyrGlyThrAlaValThrMetLys >>>> Target Intron 1 >>> : 321 ||||||||:!!|||!.!! !:!! !:!: ! 68 bp yrCysTrpHisGlyAsnGluLeuTyrLeuHis++ 620439 : ATTGCTGGCACGGGAACGAACTGTATCTTCATgt........................ : 620473 322 : > SerTrpSerValGlyAspThrIlePheAlaThrAspTrpSerProLeuSerMetG : 339 ||| !!:!:!! !! !.!! !!:! !!.!:!!|||!!!! ! !!!!! !! ++SerMetAsnIleCysPheAlaAlaTyrMetAsnAsnTrpTrpHisAsnThrLysA 620474 : .agAGCATGAATATATGTTTTGCCGCTTATATGAATAATTGGTGGCATAATACCAAGG : 620593 340 : lyLeuLysLysSerLeuLeuIleValMetIleArgAlaLysLysProIleGluLeuLy : 358 !!!!|||::!:!!||||||:!!|||||| !!:!|||:!!::!|||||| |||! spPheLysArgAlaLeuLeuValValMetSerLysAlaGlnArgProIleIleLeuTh 620594 : ATTTTAAACGAGCCTTGCTCGTTGTAATGTCAAAAGCTCAACGACCTATTATTTTAAC : 620650 359 : sThrGlyLysIlePheThrLeuSerIleLeuThrPheAlaLysIle : 373 ..!|||!!.|||.!. !||||||:!! !!.!|||!.! !:!! rValGlyAsnIleMetGluLeuSerLeuGluAsnPheValLeuVal 620651 : TGTTGGAAATATTATGGAATTATCTTTAGAGAATTTCGTTCTAGTA : 620697 vulgar: NvOr81 290 373 . KQ414583.1 620380 620697 + 134 M 30 90 5 0 2 I 0 64 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414583.1 exonerate:protein2genome:local gene 620381 620697 134 + . gene_id 1 ; sequence NvOr81 ; gene_orientation + KQ414583.1 exonerate:protein2genome:local cds 620381 620470 . + . KQ414583.1 exonerate:protein2genome:local exon 620381 620470 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local splice5 620471 620472 . + . intron_id 1 ; splice_site "GT" KQ414583.1 exonerate:protein2genome:local intron 620471 620538 . + . intron_id 1 KQ414583.1 exonerate:protein2genome:local splice3 620537 620538 . + . intron_id 0 ; splice_site "AG" KQ414583.1 exonerate:protein2genome:local cds 620539 620697 . + . KQ414583.1 exonerate:protein2genome:local exon 620539 620697 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local similarity 620381 620697 134 + . alignment_id 1 ; Query NvOr81 ; Align 620381 291 90 ; Align 620539 321 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr93 Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 142 Query range: 240 -> 373 Target range: 1306955 -> 1306556 241 : SerArgHisValLysHisHisValHisIlePheLysPheAlaGluAsnIleAsnVa : 259 |||! !|||:!!! ! ! :!!! !:!!!:!!.. ! !.!.!.::::::||| SerThrHisLeuMetIleLeuLeuLeuLeuTyrSerValValAsnAspValAsnAs 1306955 : TCGACACATTTAATGATACTGCTACTTTTATACAGCGTGGTGAATGatgtgaataa : 1306901 260 : lIlePheThrProValIleLeuValGlnPheCysMetSerSerIleValLeuSerL : 278 :::|||||||||:!!:!!!!!||||||.!! !! |||.!!||||||:!!!!!| nLeuPheThrProIleValPheValGlnLeuLeuThrSerGlyIleValIleCysL 1306900 : tttatttactccCATCGTTTTCGTACAACTTCTTACAAGCGGAATAGTAATTTGTT : 1306844 279 : euSerValTyrGlnLeuAlaValArgSerAlaAsnGlyIleGlnPheIleThrMet : 296 |||||! !!:! !:!! !! !!.!..!|||..! ! !.!..!!:!:! ! euSerGlyPheAlaValPheAspAsnAspAlaArg---ThrAspIleLeuLysTyr 1306843 : TAAGTGGATTCGCGGTTTTCGATAACGACGCCCGT---ACCGATATTCTGAAATAC : 1306793 297 : ValMetTyrLeuThrCysMetLeuValGlnPhePheMetTyrCysTrpPheGlyAs : 315 ||| ||||||:!!! !!:! !:!!|||.!!!!.:!:!::|||! ! !|||.! ValSerTyrLeuSerSerIleTrpLeuGlnLeuLeuLeuTrpCysLeuProGlyGl 1306792 : GTATCTTATTTGTCCTCGATTTGGTTGCAACTTTTGTTATGGTGTTTGCCCGGTGA : 1306736 316 : nGluValThrLeuLysSerValGluPheGlyGlnAlaIleTyr<->AsnIleGluT : 333 . :!!..!! !:!!|||:!!|||.!.|||!!.!.!:!!||| |||:!! !| uIleLeuValGlnGluSerLeuGluIleGlyHisValValTyrLeuAsnValProT 1306735 : AATTCTCGTTCAAGAGAGTTTAGAAATAGGACACGTAGTCTACTTAAATGTACCAT : 1306679 334 : rpThrSerLeuGlnValGlnThrSerLysAspLeuMetIleMetMetIleArgAla : 351 || !!:!|||! ! ! !..!!:! ! ||| !!:|||!!::!!|||||| rpTyrAsnLeuProProIleTyrGlnArgLysLeuCysMetMetIleLeuArgAla 1306678 : GGTACAATTTGCCGCCAATTTACCAGAGAAAACTTTGCATGATGATCCTTAGGGCA : 1306625 352 : LysArgProIleIleMetSerSerGlyAlaLeuValThrLeuSerIleLysSerPh : 370 :!!!:! ! !! !!!:!!!:!! !.!!!!! !|||||||||||| ! !!!!! GlnGlnTyrCysSerIleThrAlaLeuThrPheArgThrLeuSerIleHisThrLe 1306624 : CAACAATATTGCAGCATCACGGCATTAACGTTTCGAACGTTGTCTATTCACACGTT : 1306568 371 : eThrSerIle : 373 .||||||:!: uThrSerVal 1306567 : AACGAGCGTG : 1306557 vulgar: NvOr93 240 373 . KQ414608.1 1306955 1306556 - 142 M 49 147 G 1 0 M 39 117 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1306557 1306955 142 - . gene_id 1 ; sequence NvOr93 ; gene_orientation . KQ414608.1 exonerate:protein2genome:local cds 1306557 1306955 . - . KQ414608.1 exonerate:protein2genome:local exon 1306557 1306955 . - . insertions 3 ; deletions 1 KQ414608.1 exonerate:protein2genome:local similarity 1306557 1306955 142 - . alignment_id 1 ; Query NvOr93 ; Align 1306956 241 147 ; Align 1306809 291 117 ; Align 1306689 330 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr78 Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 141 Query range: 262 -> 380 Target range: 1306907 -> 1306556 263 : LeuThrLysIlePheAsnGlySerSerLeuGlnGlnLeuLeuValSerCysValIl : 281 :::......:::|||... !! ! !!!! !|||||||||..!||| ! :!!:! ValAsnAsnLeuPheThrProIleValPheValGlnLeuLeuThrSerGlyIleVa 1306907 : gtgaataatttatttactccCATCGTTTTCGTACAACTTCTTACAAGCGGAATAGT : 1306853 282 : eIleCysIleIleGlyPheLysLeuIleIleAlaLeuAsnAspGlyGlyPheGluP : 300 !||||||:!!! !|||||| !:!!.!! ! ||||||!.! !! !!!:. lIleCysLeuSerGlyPheAlaValPheAsp------AsnAspAlaArgThrAspI 1306852 : AATTTGTTTAAGTGGATTCGCGGTTTTCGAT------AACGACGCCCGTACCGATA : 1306802 301 : heLeuValTyrValAlaPheMetPheValAlaLeuLeuGlnIlePheLeuTyrCys : 318 !!||| !||||||:!!!:!:!!! ! ! !! !||||||:!!!!.|||!::||| leLeuLysTyrValSerTyrLeuSerSerIleTrpLeuGlnLeuLeuLeuTrpCys 1306801 : TTCTGAAATACGTATCTTATTTGTCCTCGATTTGGTTGCAACTTTTGTTATGGTGT : 1306748 319 : ArgProGlyAspGluLeuIleValGlnSerThrAlaValGlyTyrAlaAlaTyrGl : 337 !||||||!!: |||:!! !:!!||| !! !:!!|||:!!!.!!.!||| LeuProGlyGluIleLeuValGlnGluSerLeuGluIleGlyHisValValTyrLe 1306747 : TTGCCCGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGACACGTAGTCTACTT : 1306691 338 : nSer<->HisTrpThrSerLeuGluAlaGluSerIleArgLysIleMetPheMetI : 355 !!:! ! ||| !!:!||| ! !! ! ! ||||||:!! .!.|||| uAsnValProTrpTyrAsnLeuProProIleTyrGlnArgLysLeuCysMetMetI 1306690 : AAATGTACCATGGTACAATTTGCCGCCAATTTACCAGAGAAAACTTTGCATGATGA : 1306634 356 : leLeuArgSerGlnThrSerLeuLysMetThrAlaGlyAsnPheTyrValLeuSer : 373 ||||||||:!!||| !! !! !!..!!:|||||| !!..||| ..!|||||| leLeuArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPheArgThrLeuSer 1306633 : TCCTTAGGGCACAACAATATTGCAGCATCACGGCATTAACGTTTCGAACGTTGTCT : 1306580 374 : LeuProAsnPheThrMetIle : 380 :!!! !!..!!.|||! :!: IleHisThrLeuThrSerVal 1306579 : ATTCACACGTTAACGAGCGTG : 1306557 vulgar: NvOr78 262 380 . KQ414608.1 1306907 1306556 - 141 M 29 87 G 2 0 M 45 135 G 0 3 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1306557 1306907 141 - . gene_id 1 ; sequence NvOr78 ; gene_orientation . KQ414608.1 exonerate:protein2genome:local cds 1306557 1306907 . - . KQ414608.1 exonerate:protein2genome:local exon 1306557 1306907 . - . insertions 3 ; deletions 2 KQ414608.1 exonerate:protein2genome:local similarity 1306557 1306907 141 - . alignment_id 1 ; Query NvOr78 ; Align 1306908 263 87 ; Align 1306821 294 135 ; Align 1306683 339 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr79 Target: KQ414615.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold33, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 312 -> 393 Target range: 2576704 -> 2577016 313 : IleLeuMetTyrIleValCysLeuProValThrLeuPheGlnIleLeuPheTyrCy : 331 :::::: ::: ! !||| !|||||||||||||||:::|||...!:!|| ValIleLysPheAlaSerHisLeuIleValThrLeuPheGlnLeuLeuLeuPheCy 2576705 : gtaattaaatttgcttcTCACTTAATCGTGAcgctttttcaattattactcTTTTG : 2576759 332 : sGlnProGlyAsnGluLeuIleValGln >>>> Target Intron 1 >>>> : 341 | ||||||:!! !|||||| !||| 69 bp sPheProGlyAspMetLeuIleArgGln++ + 2576760 : TTTCCCTGGGGATATGCTAATCCGACAGgt.........................a : 2576856 342 : SerGlnSerLeuAspGluAlaIleGlnGlnSerHisTrpValAsnLeuAspArgL : 359 ||| |||:!!..! !||| ! ! ..!! !!!.||| !.!.||| ! !! +SerPheSerIleSerThrAlaAlaTyrSerIleGlnTrpCysGlnLeuProThrP 2576857 : gAGTTTCAGTATAAGTACAGCTGCATATTCAATACAGTGGTGTCAACTGCCAACTT : 2576912 360 : euSerLysArgGlnLeuPhePheMetIleGlnArgSerGlnLysProLeuAlaIle : 377 !! !||| !:!!:!!! !.!.!!:|||! !|||||||||!:! !! ! !||| heLeuLysAspGluValCysMetIleIleLeuArgSerGlnArgSerSerTyrIle 2576913 : TTCTTAAAGACGAAGTATGCATGATTATACTACGTTCTCAAAGATCTAGCTACATT : 2576966 378 : ThrAlaGlyLysIleTyrValLeuSerLeuGluAsnPheMetArgIle : 393 |||||||||||||||||||||::: |||||||||||| ::: ThrAlaGlyLysIleTyrValMetHisLeuGluAsnPheThrAlaVal 2576967 : ACTGCGGGAAAGATATATGTGAtgcatttggaaaatttcaccgcggta : 2577016 vulgar: NvOr79 312 393 . KQ414615.1 2576704 2577016 + 146 M 28 84 5 0 2 I 0 65 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414615.1 exonerate:protein2genome:local gene 2576705 2577016 146 + . gene_id 1 ; sequence NvOr79 ; gene_orientation + KQ414615.1 exonerate:protein2genome:local cds 2576705 2576788 . + . KQ414615.1 exonerate:protein2genome:local exon 2576705 2576788 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local splice5 2576789 2576790 . + . intron_id 1 ; splice_site "GT" KQ414615.1 exonerate:protein2genome:local intron 2576789 2576857 . + . intron_id 1 KQ414615.1 exonerate:protein2genome:local splice3 2576856 2576857 . + . intron_id 0 ; splice_site "AG" KQ414615.1 exonerate:protein2genome:local cds 2576858 2577016 . + . KQ414615.1 exonerate:protein2genome:local exon 2576858 2577016 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local similarity 2576705 2577016 146 + . alignment_id 1 ; Query NvOr79 ; Align 2576705 313 84 ; Align 2576858 341 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr93 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 305 Query range: 249 -> 377 Target range: 3178378 -> 3178917 250 : IlePheLysPheAlaGluAsnIleAsnValIlePheThrProValIleLeuValGl : 268 ||| :::|||.!!:!!!..:!:|||..!:!:||| ! !:!!|||!!!:!!|| IleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLeuGl 3178379 : atttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCTGCA : 3178433 269 : nPheCysMetSerSerIleValLeuSerLeuSerValTyrGlnLeuAlaValArgS : 287 ||||! !!!:||||||! ||||||!!!||||||:!!|||:!!:!!:!!..!! !! nPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrIleA 3178434 : ATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGATTA : 3178490 288 : erAlaAsnGlyIleGlnPheIleThrMetValMetTyrLeuThrCysMetLeuVal : 305 :! !! !.!!!!:.!.|||:!! ! !.! |||||| !|||||||||..! snProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeuThr 3178491 : ATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACG : 3178544 306 : GlnPhePheMetTyrCysTrpPheGlyAsnGluValThrLeuLys >>>> Targ : 321 ||| ! !:!:!:||||||||||||||||||||||||||||||||| GlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys++ 3178545 : CAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAGgt......... : 3178594 322 : et Intron 1 >>>> SerValGluPheGlyGlnAlaIleTyrAsnIleGluTr : 333 155 bp |||! !:!! ! |||:!!|||||||||.!.!!:!!:|| ++SerGluLysValGlyGluAlaIleTyrGluMetAspTr 3178595 : ................agAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTG : 3178783 334 : pThrSerLeuGlnValGlnThrSerLysAspLeuMetIleMetMetIleArgAlaL : 352 ||||:!!|||! ..!.!.! !!!!|||||||||:!!:!:!!:||| |||:!!| pThrAlaLeuProThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerL 3178784 : GACGGCACTTCCCACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAA : 3178840 353 : ysArgProIleIleMetSerSerGlyAlaLeuValThrLeuSerIleLysSerPhe : 370 ||||||||:!!! !|||!!!|||||| !:!!|||..!|||||| !:!!|||||| ysArgProValLysMetThrSerGlyHisValValValLeuSerAlaGluSerPhe 3178841 : AACGACCTGTTAAAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTT : 3178894 371 : ThrSerIleLeuLysAlaSer : 377 ! !|||:!! !!:! !||| MetSerValSerArgIleSer 3178895 : ATGTCTGTTAGTAGAATTTCC : 3178917 vulgar: NvOr93 249 377 . KQ414646.1 3178378 3178917 + 305 M 71 213 5 0 2 I 0 151 3 0 2 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178379 3178917 305 + . gene_id 1 ; sequence NvOr93 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3178379 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178379 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178592 3178593 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3178592 3178746 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3178745 3178746 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3178747 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178747 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178379 3178917 305 + . alignment_id 1 ; Query NvOr93 ; Align 3178379 250 213 ; Align 3178747 321 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr93 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 251 -> 329 Target range: 3155805 -> 3156039 252 : LysPheAlaGluAsnIleAsnValIlePheThrProValIleLeuValGlnPheCy : 270 !:!|||.!!! ! ||||||! ! !||| ! !!.!|||!!!..!||||||.. ArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAl 3155806 : AGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGC : 3155860 271 : sMetSerSerIleValLeuSerLeuSerValTyrGlnLeuAlaValArgSerAlaA : 289 .:!!|||!!!:!:!.!:!!!!!!!!!:!:!!|||! !|||.!!! ! !..!!.!! aValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValT 3155861 : GGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGA : 3155917 290 : snGlyIleGlnPheIleThrMetValMetTyrLeuThrCysMetLeuValGlnPhe : 307 .. !|||::!!:!:!: !!!::!!|||||| !!:!|||||||||..!|||.!. hrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIle 3155918 : CGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATA : 3155971 308 : PheMetTyrCysTrpPheGlyAsnGluValThrLeuLysSerValGluPheGlyGl : 326 |||!!:|||||||||!:!||||||||||||! !|||||| ! ! ! ||| !!!! PheIleTyrCysTrpTyrGlyAsnGluValLysLeuLysValSerTyrPheArgHi 3155972 : TTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAGGTTTCTTATTTTCGACA : 3156028 327 : nAlaIleTyr : 329 ...! !||| sCysSerTyr 3156029 : TTGTTCATAT : 3156039 vulgar: NvOr93 251 329 . KQ414646.1 3155805 3156039 + 159 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155806 3156039 159 + . gene_id 2 ; sequence NvOr93 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155806 3156039 . + . KQ414646.1 exonerate:protein2genome:local exon 3155806 3156039 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155806 3156039 159 + . alignment_id 2 ; Query NvOr93 ; Align 3155806 252 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr93 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 100 -> 213 Target range: 3155337 -> 3155670 101 : ValGlnCysIleProLysAsnValArgGluLeuGluIleThrArgLysPheAspLy : 119 ..!..!|||.!! !!|||..! !!:! ||| ! !! ! ! ! ThrMetCysPheThrLysArgSerLysLeuLeuThrCysCysLeuValThrThrTh 3155338 : ACCATGTGTTTTACGAAACGTTCGAAACTCTTAACCTGTTGCCTTGTGACAACGAC : 3155392 120 : sIleAlaArgPheThrAlaLeuSerCysIleValLeuAlaGluAlaThrValValV : 138 :!!..!||| !:!:!! !! !! ! :!!|||!.!|||:!!||||||:!!. rValCysArgArgSerSerThrTyrTyrAlaIleLeuValGluSerThrValMetT 3155393 : CGTTTGCAGAAGAAGCTCAACCTATTACGCGATTCTGGTCGAATCGACGGTGATGA : 3155449 139 : alMetSerThrGlyProLeuPheGlnLysAlaGluAsnArgThrLeuProPheLys : 156 .!:!!||| !||| !!|||!!. ||| !!|||:::||| !!||||||!:!::! hrLeuSerPheGlyAlaLeuLeu---LysProGluSerArgProLeuProTyrArg 3155450 : CTTTGTCTTTCGGTGCACTGTTG---AAACCAGAATCACGTCCTTTACCGTATCGA : 3155500 157 : SerTrpLeuProTyrAspSerThrThrThrProCysThrPheTrpLeuSerTyrVa : 175 ! !|||||||||! !:!!! !||| !! ! !|||!:!!! ! !! !|||.. IleTrpLeuProCysAsnTyrThrProLeu---IleThrTyrCysSerIleTyrTh 3155501 : ATTTGGCTACCTTGCAATTACACCCCGTTA---ATTACTTACTGTTCGATTTACAC : 3155554 176 : lHisGlnThrAlaAlaIleValLeuCysAlaThrValAsnValAlaAsnAspSerL : 194 !! !||| !!.!|||:!!!.!||| !!|||! !:!!:!!|||||| !||||||| rLeuGlnCysValAlaLeuAlaLeuSerAlaMetMetHisValAlaCysAspSerL 3155555 : TCTCCAATGTGTGGCACTCGCTCTAAGCGCTATGATGCACGTCGCCTGCGACAGTT : 3155611 195 : euIleCysGlyPheMetThrHisSerCysSerGlnLeuGluLeuLeuAsnArgArg : 212 |||||||||||.!.:!! !|||!!!! !.!!|||:!!|||:!!|||..! !!||| euIleCysGlyLeuLeuLeuHisThrTyrGlyGlnIleGluIleLeuGlyCysArg 3155612 : TGATCTGCGGCCTGCTGTTACACACTTACGGCCAGATCGAGATCCTCGGTTGTCGT : 3155665 213 : Leu : 213 ||| Leu 3155666 : CTG : 3155670 vulgar: NvOr93 100 213 . KQ414646.1 3155337 3155670 + 147 M 45 135 G 1 0 M 20 60 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155338 3155670 147 + . gene_id 3 ; sequence NvOr93 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155338 3155670 . + . KQ414646.1 exonerate:protein2genome:local exon 3155338 3155670 . + . insertions 0 ; deletions 2 KQ414646.1 exonerate:protein2genome:local similarity 3155338 3155670 147 + . alignment_id 3 ; Query NvOr93 ; Align 3155338 101 135 ; Align 3155473 147 60 ; Align 3155533 168 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr93 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 251 -> 320 Target range: 3164980 -> 3165184 252 : LysPheAlaGluAsnIleAsnValIlePheThrProValIleLeuValGlnPheCy : 270 !:!|||:!!:!!!!.:!:|||! ! !|||! !! !:!!:!::!! !|||||||| ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3164981 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3165035 271 : sMetSerSerIleValLeuSerLeuSerValTyrGlnLeuAlaValArgSerAlaA : 289 |!!:|||! ! |||:!!!!!!!!!:!:!!|||!:!:!! ..!!:!! ! !! sIleSerMetSerValIleCysPheAsnLeuTyrArgMet---ThrGlnIleLysM 3165036 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATG---ACACAGATCAAAA : 3165089 290 : snGlyIleGlnPheIleThrMetValMetTyrLeuThrCysMetLeuValGlnPhe : 307 ! :::|||::: ::::!!:!:|||! ! !|||! :!!..!|||.!. etAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 3165090 : TGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 3165143 308 : PheMetTyrCysTrpPheGlyAsnGluValThrLeuLys : 320 ||| |||||||||!:!||||||||||||! !! !||| PheTyrTyrCysTrpTyrGlyAsnGluValLysHisLys 3165144 : TTTTACTATTGCTGGTACGGCAACGAAGTGAAACATAAG : 3165184 vulgar: NvOr93 251 320 . KQ414646.1 3164980 3165184 + 126 M 32 96 G 1 0 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164981 3165184 126 + . gene_id 4 ; sequence NvOr93 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164981 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164981 3165184 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3164981 3165184 126 + . alignment_id 4 ; Query NvOr93 ; Align 3164981 252 96 ; Align 3165077 285 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr93 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 251 -> 317 Target range: 3158452 -> 3158647 252 : LysPheAlaGluAsnIleAsnValIlePheThrProValIleLeuValGlnPheCy : 270 !:!|||:!!:!!!!.:!:|||! ! !|||! !! !:!!:!::!! !|||||||| ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3158453 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3158507 271 : sMetSerSerIleValLeuSerLeuSerValTyrGlnLeuAlaValArgSerAlaA : 289 |!!:|||! ! |||:!!!!!!!!!:!:!!|||!:!:!! ..!!:!! ! !! sIleSerMetSerValIleCysPheAsnLeuTyrArgMet---ThrGlnIleLysM 3158508 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATG---ACACAGATCAAAA : 3158561 290 : snGlyIleGlnPheIleThrMetValMetTyrLeuThrCysMetLeuValGlnPhe : 307 ! :::|||::: ::::!!:!:|||! ! !|||! :!!..!|||.!. etAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 3158562 : TGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 3158615 308 : PheMetTyrCysTrpPheGlyAsnGluVal : 317 ||| |||||||||!:!|||||||||||| PheTyrTyrCysTrpTyrGlyAsnGluVal 3158616 : TTTTACTATTGTTGGTACGGCAACGAAGTG : 3158647 vulgar: NvOr93 251 317 . KQ414646.1 3158452 3158647 + 125 M 32 96 G 1 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158453 3158647 125 + . gene_id 5 ; sequence NvOr93 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158453 3158647 . + . KQ414646.1 exonerate:protein2genome:local exon 3158453 3158647 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3158453 3158647 125 + . alignment_id 5 ; Query NvOr93 ; Align 3158453 252 96 ; Align 3158549 285 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr93 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 143 -> 213 Target range: 3164382 -> 3164589 144 : LeuPheGlnLysAlaGluAsnArgThrLeuProPheLysSerTrpLeuProTyrAs : 162 |||!!. ! ! !...!:!|||! !||| !|||::!:!!|||||||||||||| LeuLeuThrAspPheSerSerArgLysLeuMetPheArgAlaTrpLeuProTyrAs 3164383 : CTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGCATGGTTACCCTACGA : 3164437 163 : pSerThrThrThrProCysThrPheTrpLeuSerTyrValHisGlnThrAlaAlaI : 181 |! !:!! !!.!!||| ! !||| |||!!!!:!|||||||||.!! !||| pTyrSerProAlaPro---IlePheIleLeuThrPheValHisGlnAlaIleAlaA 3164438 : TTACTCCCCTGCGCCC---ATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCG : 3164491 182 : leValLeuCysAlaThrValAsnValAlaAsnAspSerLeuIleCysGlyPheMet : 199 ..!:!!|||..!||| !!:!|||.!! ||||||||| ! !|||!!.:!! laThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLeu 3164492 : CGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTG : 3164545 200 : ThrHisSerCysSerGlnLeuGluLeuLeuAsnArgArgLeu : 213 ! !:!!! !! !!!!|||!!!|||:!!|||.!.!.!|||||| IleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeu 3164546 : ATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTA : 3164589 vulgar: NvOr93 143 213 . KQ414646.1 3164382 3164589 + 123 M 24 72 G 1 0 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164383 3164589 123 + . gene_id 6 ; sequence NvOr93 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164383 3164589 . + . KQ414646.1 exonerate:protein2genome:local exon 3164383 3164589 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3164383 3164589 123 + . alignment_id 6 ; Query NvOr93 ; Align 3164383 144 72 ; Align 3164455 169 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr93 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 251 -> 320 Target range: 3180460 -> 3180667 252 : LysPheAlaGluAsnIleAsnValIlePheThrProValIleLeuValGlnPheCy : 270 !..!!.||||||! !!:|||! !! !.!. !! !..!!!:!!!!.!||||||! SerLeuAlaGluIleMetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePh 3180461 : AGTTTAGCTGAAATAATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTT : 3180515 271 : sMetSerSerIleValLeuSerLeuSerValTyrGlnLeuAlaValArgSerAlaA : 289 ! |||! !!!:|||:!!!!!||||||:!! !|||||| ! ! !..! ! eGlySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleL 3180516 : CGGAAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTC : 3180572 290 : snGlyIleGlnPheIleThrMetValMetTyrLeuThrCysMetLeuValGlnPhe : 307 !.!!! !:!!|||:!!.!!! !:::...||||||::: :::|||:!!||| ! euSerThrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSer 3180573 : TCAGCACCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGC : 3180626 308 : PheMetTyrCysTrpPheGlyAsnGluValThrLeuLys : 320 |||:!:|||||||||!:!||||||||||||! ! !||| PheLeuTyrCysTrpTyrGlyAsnGluValArgThrLys 3180627 : TTTCTTTACTGTTGGTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: NvOr93 251 320 . KQ414646.1 3180460 3180667 + 120 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180461 3180667 120 + . gene_id 7 ; sequence NvOr93 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180461 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180461 3180667 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180461 3180667 120 + . alignment_id 7 ; Query NvOr93 ; Align 3180461 252 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr93 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 132 -> 206 Target range: 3153144 -> 3153363 133 : GluAlaThrValValValMetSerThrGlyProLeuPheGlnLysAlaGluAsnAr : 151 !!: ! !|||||||||:!:!!!! ! ! !!! !||| ! ! !..!...|| AspIleLeuValValValLeuTrpIleThrSerTyrPheThrAspTyrArgArgAr 3153145 : GACATCTTGGTAGTCGTTTTATGGATAACATCGTACTTCACGGACTACAGGcgcag : 3153199 152 : gThrLeuProPheLysSerTrpLeuProTyrAspSerThrThrThrProCysThrP : 170 | ... |||::: !|||||||||||||||!!!|||||| !||| ..!| gLysPheLysPheArgValTrpLeuProTyrAspThrThrThrGlnPro---ValP 3153200 : aaaattcaaatttcgcgtCTGGTTACCTTACGACACTACTACACAACCT---GTCT : 3153253 171 : heTrpLeuSerTyrValHisGlnThrAlaAlaIleValLeuCysAlaThrValAsn : 188 || |||! !||| !!!.|||! !!.!..!! !! ! !!!.!!.!:!!||| heThrLeuIleTyrCysGlnGlnIleValCysThrTrpTyrSerValAsnIleAsn 3153254 : TCACTCTGATCTACTGTCAACAGATCGTCTGCACGTGGTACAGCGTGAATATTAAC : 3153307 189 : ValAlaAsnAspSerLeuIleCysGlyPheMetThrHisSerCysSerGlnLeu : 206 ||| ! !|||!!!|||.!! !!|||.!.|||! !!!.! !|||||| ||| ValIleCysAspCysLeuPheSerGlyLeuMetIleGlnIleCysSerIleLeu 3153308 : GTCATTTGCGACTGCCTGTTCAGCGGCCTGATGATACAGATTTGCTCAATCTTA : 3153363 vulgar: NvOr93 132 206 . KQ414646.1 3153144 3153363 + 100 M 35 105 G 1 0 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153145 3153363 100 + . gene_id 8 ; sequence NvOr93 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153145 3153363 . + . KQ414646.1 exonerate:protein2genome:local exon 3153145 3153363 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3153145 3153363 100 + . alignment_id 8 ; Query NvOr93 ; Align 3153145 133 105 ; Align 3153250 169 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr93 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 250 -> 320 Target range: 3160720 -> 3160927 251 : PheLysPheAlaGluAsnIleAsnValIlePheThrProValIleLeuValGlnPh : 269 |||!:!|||||||||! !||||||!.!! |||!:! !..!!!: !..!||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3160721 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3160775 270 : eCysMetSerSerIleValLeuSerLeuSerValTyrGlnLeuAlaValArgSerA : 288 | :!!!!!!!!!!:..!:!!!!!!!!!:!:!!!:!!:!|||.!! !! !!.!! eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3160776 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3160832 289 : laAsnGlyIleGlnPheIleThrMetValMetTyrLeuThrCysMetLeuValGln : 306 .! !!..! ||| !!:!!.!!:!!:!! !!:!:!!..! !!:!!!!!!.!||| alTyrSer---GlnValLeuAlaLeuIleProPheMetValSerValPheAlaGln 3160833 : TGTATTCG---CAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAG : 3160883 307 : PhePheMetTyrCysTrpPheGlyAsnGluValThrLeuLys : 320 .!.||| ! !||||||!:!|||||||||..!! !:!!||| IlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys 3160884 : ATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG : 3160927 vulgar: NvOr93 250 320 . KQ414646.1 3160720 3160927 + 100 M 40 120 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160721 3160927 100 + . gene_id 9 ; sequence NvOr93 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160721 3160927 . + . KQ414646.1 exonerate:protein2genome:local exon 3160721 3160927 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3160721 3160927 100 + . alignment_id 9 ; Query NvOr93 ; Align 3160721 251 120 ; Align 3160841 292 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr93 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 250 -> 320 Target range: 3174931 -> 3175138 251 : PheLysPheAlaGluAsnIleAsnValIlePheThrProValIleLeuValGlnPh : 269 |||!:!|||||||||! !||||||!.!! |||!:! !..!!!: !..!||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3174932 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3174986 270 : eCysMetSerSerIleValLeuSerLeuSerValTyrGlnLeuAlaValArgSerA : 288 | :!!!!!!!!!!:..!:!!!!!!!!!:!:!!!:!!:!|||.!! !! !!.!! eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3174987 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3175043 289 : laAsnGlyIleGlnPheIleThrMetValMetTyrLeuThrCysMetLeuValGln : 306 .! !!..! ||| !!:!!.!!:!!:!! !!:!:!!..! !!:!!!!!!.!||| alTyrSer---GlnValLeuAlaLeuIleProPheMetValSerValPheAlaGln 3175044 : TGTATTCG---CAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAG : 3175094 307 : PhePheMetTyrCysTrpPheGlyAsnGluValThrLeuLys : 320 .!.||| ! !||||||!:!|||||||||..!! !:!!||| IlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys 3175095 : ATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG : 3175138 vulgar: NvOr93 250 320 . KQ414646.1 3174931 3175138 + 100 M 40 120 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174932 3175138 100 + . gene_id 10 ; sequence NvOr93 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174932 3175138 . + . KQ414646.1 exonerate:protein2genome:local exon 3174932 3175138 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3174932 3175138 100 + . alignment_id 10 ; Query NvOr93 ; Align 3174932 251 120 ; Align 3175052 292 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr87 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 391 Query range: 147 -> 375 Target range: 3177991 -> 3178917 148 : AsnArgThrLeuProMetArgValTrpLeuProTyrLysValAspSerAspMetSe : 166 ::!!:!|||||||||!!: !! !|||:!!|||||| ! :!!..!|||.!.! ! SerLysThrLeuProIleSerAspTrpValProTyrAspLeuSerSerGlnLysLe 3177992 : TCCAAGACTTTGCCAATATCCGACTGGGTGCCTTACGATTTGTCCTCGCAAAAATT : 3178046 167 : rTyrTrpLeuSerTyrAlaHisGlnThrValGlyIleValPheValGlyThrGlyA : 185 !||| !:!!||| !|||||||||:!!|||:!::!! !! !!.!!.! !: uTyrThrIleSerLeuLeuHisGlnThrIleGlyLeuMetValCysAlaAsnThrS 3178047 : GTACACGATATCTCTGTTGCATCAAACGATAGGCCTGATGGTCTGTGCGAACACCA : 3178103 186 : laValGlySerThrLeuMetIleAsnGlyPheMetTyrGlnValCysCysGlnPhe : 203 :!|||!.!!:! ! !:!:||| |||.!.||| |||!.! !!...|||||| erValAlaAsnGluThrLeuIleAlaGlyLeuMetIleGlnAlaGlyAlaGlnPhe 3178104 : GCGTGGCAAACGAAACACTTATCGCAGGGCTGATGATACAAGCTGGCGCGCAATTC : 3178157 204 : GluIleLeuSerSerArgPheGlnAsnLeuProLeuIleIleGluLysPheGlnSe : 222 ||||||!!!!!! !||| ::!|||||| !! !:!!:!! ! ! !::!!! GluIlePheCysHisArgAlaArgAsnLeuThrAlaLeuLeuLeuAspThrArgAr 3178158 : GAGATATTTTGCCATCGAGCGAGAAATCTAACCGCCCTACTCTTGGATACCAGAAG : 3178214 223 : rLeuLysLysProAsnGlnLeuIleTyrArgTyrGluLysArgValMetArgGlnA : 241 ! !!..:!! !!!..:!! !.!! ! ! ! !!.|||:::::: ... gAsnSerGluSerArgGluAlaPheLysThrArgCysAsnArgIleLeuGlyAsnP 3178215 : AAACAGCGAGTCTAGAGAAGCTTTTAAGACCAGATGTAATCGaatacttggaaatt : 3178271 242 : snIleArgHisHisLeuTyrIlePhe{Ar} >>>> Target Intron 1 >>> : 250 :::..!:!!|||||| ! :!!!:!{!:} 87 bp heValGluTyrHisLeuGluValTyr{Ly}++ 3178272 : tcgtggaATATCATCTGGAAGTTTAC{aa}gt........................ : 3178302 251 : > {g}PheAlaGluAlaLeuAsnLysIlePheLysSerValIlePheGlnGlnPh : 267 {!}|||.!!:!!.!!:!!|||! :!:|||:!!! !:!!||||||! !||||| ++{s}PheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLeuGlnPh 3178303 : .ag{a}TTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCTGCAATT : 3178436 268 : eCysLeuSerSerIleValValSerValSerIleTyrGlnLeuSerThrArgProG : 286 |! !:!!||||||! |||:!!!!!:!!|||||||||:!!:!!||||||! ! ! eSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrIleAsnP 3178437 : TTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGATTAATC : 3178493 287 : luLysAspLeuGluPheIleMetValPhePheTyrLeuValCysValLeuValGlu : 304 ! ..!:!!.!.|||:!! ! ! !! !|||||| !|||:!!|||..!:!! roPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeuThrGln 3178494 : CATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACGCAG : 3178547 305 : PheLeuValTyrSerTrpPheGlyAsnGluLeuMetLeuGlu >>>> Target : 319 ! ! !:!!|||!!!|||||||||||||||:!!! !|||:!! 15 ValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys++ 3178548 : GTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAGgt............ : 3178594 320 : Intron 2 >>>> SerLeuAsnPheGlnGlnThrIleTyrGluIleAspTrpTh : 332 5 bp ||| !!!. ! :!!.!!|||||||||!!:|||||||| ++SerGluLysValGlyGluAlaIleTyrGluMetAspTrpTh 3178595 : .............agAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGAC : 3178786 333 : rSerLeuSerThrArgSerSerArgAspLeuValLeuIleMetMetArgAlaSerL : 351 |:!!||| !!||| !! !!!!!:!||||||:!!||||||||| !|||:!!!.!: rAlaLeuProThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysA 3178787 : GGCACTTCCCACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAAC : 3178843 352 : ysProIleIleMetTyrCysGlyHisPheIleValLeuSerLeuGluSerTyrIle : 369 :!|||:!!! !||| !!|||||| !!:!!||||||||| !||||||!:!!!: rgProValLysMetThrSerGlyHisValValValLeuSerAlaGluSerPheMet 3178844 : GACCTGTTAAAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATG : 3178897 370 : GlyIleLeuLysValSer : 375 ..!:!! !!:!:!!||| SerValSerArgIleSer 3178898 : TCTGTTAGTAGAATTTCC : 3178917 vulgar: NvOr87 147 375 . KQ414646.1 3177991 3178917 + 391 M 102 306 S 0 2 5 0 2 I 0 83 3 0 2 S 1 1 M 68 204 5 0 2 I 0 151 3 0 2 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3177992 3178917 391 + . gene_id 1 ; sequence NvOr87 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3177992 3178299 . + . KQ414646.1 exonerate:protein2genome:local exon 3177992 3178299 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178300 3178301 . + . intron_id 1 ; splice_site "gt" KQ414646.1 exonerate:protein2genome:local intron 3178300 3178386 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3178385 3178386 . + . intron_id 0 ; splice_site "ag" KQ414646.1 exonerate:protein2genome:local cds 3178387 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178387 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178592 3178593 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3178592 3178746 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3178745 3178746 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3178747 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178747 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3177992 3178917 391 + . alignment_id 1 ; Query NvOr87 ; Align 3177992 148 306 ; Align 3178388 251 204 ; Align 3178747 319 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr87 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 0 -> 216 Target range: 3152421 -> 3153402 1 : MetHisIleLeuTyrLeuProPheLysLeuLeuThrLeuThrGlyIleTrpMetPr : 19 ||| !!! !||| !! ! !!|||||||||||||||:!!!.!|||||| ! || MetAspThrLeuSerTrpThrPheLysLeuLeuThrValAsnGlyIleLeuAlaPr 3152422 : aTGGATACTCTAAGCTGGACGTTCAAGCTTCTGACGGTGAACGGTATTCTGGCACC : 3152476 20 : oGluAspTrpThrGlnLysGlnGlnLysLeuIleTrpValLeuTyrSerMetValS : 38 |...! !!::! !...:!! !|||! !:!!:!:!::! !:!!|||! !.!. !!! oSerAlaPheMetSerGlnTrpGlnThrIleLeuTyrGlyMetTyrMetPhePheM 3152477 : GTCCGCTTTCATGTCTCAGTGGCAGACGATTTTGTACGGGATGTACATGTTCTTCA : 3152533 39 : erIleGlyLeuValPhe<->MetGlnLeuSerSerGlnIleGlyTyrLeuMetGln : 55 !:!:..!:!!:!!!:! |||:!!! !!!! ! :!:||| :!!.!..!. etValSerMetLeuTyrAlaMetGluCysCysLeuIleLeuGlyMetIlePheAsn 3152534 : TGGTGTCGATGCTCTACGCGATGGAGTGCTGCCTGATCTTGGGCATGATATTCAAC : 3152587 56 : SerLysThrTrpAlaGlnValAsnGluArgLeuPhePheIleProThrGlyIleSe : 74 ! ! !:! !! !.!. !!!:!|||!.!|||!:!.!!! !! ! !!!:!! ValAspSerGlnGluAspPheSerGluAsnLeuTyrIleThrLeuIleLeuMetCy 3152588 : GTGGACAGTCAGGAGGATTTCAGCGAGAATCTGTATATCACGTTGATACTGATGTG : 3152644 75 : rSerValHisLysIlePheIlePheIleValHisArgLysAspLeuIleSerLeuG : 93 !||| ! !||||||!:!!!:.!.:!!..! ! !|||! :!!! ! !:!!! sSerCysCysLysIleTyrMetLeuValThrSerAlaLysGlyIleLysValMetV 3152645 : CAGCTGTTGCAAAATCTACATGCTGGTCACTTCTGCGAAGGGGATCAAAGTTATGG : 3152701 94 : lyAsnMetLeuLeuLysGluTyrCysIleProArgAsnAlaGluGluLeuSerIle : 111 !:!!:!:|||! !:!!||| !! !:!:|||! !||| !|||||| !..!||| alAspValLeuArgGluGluProPheValProMetAsnArgGluGluAsnGluIle 3152702 : TGGACGTCCTTCGAGAGGAGCCTTTCGTGCCTATGAACAGAGAAGAGAACGAGATT : 3152755 112 : GlnGluArgTyrAsnGluIleIleArg{V} >>>> Target Intron 1 >>> : 121 ::!! !|||!:!.!.|||! !|||..!{:} 328 bp ArgValArgPheGluGluLysIleGlu{I}++ 3152756 : AGAGTGAGATTCGAGGAGAAAATCGAG{A}gt........................ : 3152788 122 : > {al}LeuThrLeu--AlaCysAlaPheLeuValAsnValThrMetMetAsnLe : 137 {!!} !||||||##|||! !.!!!:!!!!:!!:!!:!! !:!::!: !|| ++{le}GlyThrLeu##AlaTyrThrTyrPheLeuAspIleLeuValValValLe 3152789 : .ag{TT}GGAACGCTAAGGCTTACACATATTTCCTGGACATCTTGGTAGTCGTTTT : 3153163 138 : uValThrLeuProLeuValThrSerGlyAspAsnArgThrLeuProMetArgValT : 156 | !! ! ! !!! ! !!|||..! ! ...||| ... ...||||||| uTrpIleThrSerTyrPheThrAspTyrArgArgArgLysPheLysPheArgValT 3153164 : ATGGATAACATCGTACTTCACGGACTACAGGcgcagaaaattcaaatttcgcgtCT : 3153220 157 : rpLeuProTyrLysValAspSerAspMetSerTyrTrpLeuSerTyrAlaHisGln : 174 ||||||||||| ! ..! !!!!.!. !!:! |||! !|||..!!!.||| rpLeuProTyrAspThrThrThrGlnProValPheThrLeuIleTyrCysGlnGln 3153221 : GGTTACCTTACGACACTACTACACAACCTGTCTTCACTCTGATCTACTGTCAACAG : 3153274 175 : ThrValGlyIleValPheValGlyThrGlyAlaValGlySerThrLeuMetIleAs : 193 ! !||| !!! !!:! !! !!.! ! !||| !!!! !! !:!!.!!!: IleValCysThrTrpTyrSerValAsnIleAsnValIleCysAspCysLeuPheSe 3153275 : ATCGTCTGCACGTGGTACAGCGTGAATATTAACGTCATTTGCGACTGCCTGTTCAG : 3153331 194 : nGlyPheMetTyrGlnValCysCysGlnPheGluIleLeuSerSerArgPheGlnA : 212 !|||.!.||| |||:!!|||! !!...!! :!!!.! !!! ! !:!| rGlyLeuMetIleGlnIleCysSerIleLeuArgLysMetLysProThrArgArgA 3153332 : CGGCCTGATGATACAGATTTGCTCAATCTTACGGAAGATGAAACCTACTCGGCGAA : 3153388 213 : snLeuProLeuIle : 216 ||! ! !|||:!! snCysValLeuVal 3153389 : ACTGTGTGCTCGTC : 3153402 vulgar: NvOr87 0 216 . KQ414646.1 3152421 3153402 + 144 M 43 129 G 0 3 M 77 231 S 0 1 5 0 2 I 0 324 3 0 2 S 1 2 M 3 9 F 0 2 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3152422 3153402 144 + . gene_id 2 ; sequence NvOr87 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3152422 3152785 . + . KQ414646.1 exonerate:protein2genome:local exon 3152422 3152785 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3152786 3152787 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3152786 3153113 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3153112 3153113 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3153114 3153402 . + . KQ414646.1 exonerate:protein2genome:local exon 3153114 3153402 . + . insertions 0 ; deletions 0 ; frameshifts 2 KQ414646.1 exonerate:protein2genome:local similarity 3152422 3153402 144 + . alignment_id 2 ; Query NvOr87 ; Align 3152422 1 129 ; Align 3152554 44 231 ; Align 3153116 122 9 ; Align 3153127 125 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr87 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 119 -> 213 Target range: 3160053 -> 3160338 120 : ArgValLeuThrLeuAlaCysAlaPheLeuValAsnValThrMetMetAsnLeuVa : 138 ||| !|||:!!:!!|||! !.!! !!! !..! :!!!:! !! ..!:!! ArgLysLeuSerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValTr 3160054 : AGAAAGCTCTCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTATG : 3160108 139 : lThrLeuProLeuValThrSerGlyAspAsnArgThrLeuProMetArgValTrpL : 157 !! !||| !! !:!!|||:!! ! ! !||| !||||||:!:|||||||||| pMetLeuSerAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrpL 3160109 : GATGTTGTCGGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGGT : 3160165 158 : euProTyrLysValAspSerAspMetSer<->TyrTrpLeuSerTyrAlaHisGln : 174 |||||!:! ! ! :!! :!!.!! !:! ! |||!!!||||||:!!||| euProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGln 3160166 : TACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAG : 3160219 175 : ThrValGlyIleValPheValGlyThrGlyAlaValGlySerThrLeuMetIleAs : 193 !||| !:!::!!|||:!! !|||!.! !:!!|||!!! ! !:!:.!!!: PheValThrLeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheSe 3160220 : TTTGTAACTCTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCAG : 3160276 194 : nGlyPheMetTyrGlnValCysCysGlnPheGluIleLeuSerSerArgPheGlnA : 212 !|||.!.:!! !!!.:!!! !||||||||||||||||||..! !|||.!.:!!! rGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysS 3160277 : CGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGA : 3160333 213 : snLeu : 213 :!:!! erIle 3160334 : GCATT : 3160338 vulgar: NvOr87 119 213 . KQ414646.1 3160053 3160338 + 131 M 47 141 G 0 3 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160054 3160338 131 + . gene_id 3 ; sequence NvOr87 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160054 3160338 . + . KQ414646.1 exonerate:protein2genome:local exon 3160054 3160338 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160054 3160338 131 + . alignment_id 3 ; Query NvOr87 ; Align 3160054 120 141 ; Align 3160198 167 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr87 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 318 -> 387 Target range: 3165264 -> 3165545 319 : SerLeuAsnPheGlnGlnThrIleTyrGluIleAspTrpThrSerLeuSerThrAr : 337 ||||||.!..!!! ! ! ! !|||!:!.!.! !|||||||||||||||!:!!.!!. SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAs 3165265 : AGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAA : 3165319 338 : gSerSerArgAspLeuValLeuIleMetMetArgAlaSerLysProIleIleMetT : 356 ! !!!!|||! |||:!!:!!!!:|||! |||||| !!:!|||||| .!. nValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheT 3165320 : CGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCA : 3165376 357 : yrCysGlyHisPheIleValLeuSerLeuGluSerTyrIleGly >>>> Targe : 371 ! !! !||| !!:!! !:!!!:!|||||||||!:!!!:!.! hrSerIleHisValValSerValAsnLeuGluSerPheMetAla++ 3165377 : CCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt.......... : 3165423 372 : t Intron 1 >>>> IleLeuLysValSerTyrSerValPheAsnIleLeuArg : 383 74 bp :!!:!!|||..!|||||||||!.!||||||!!::!!!:! ++ValIleLysThrSerTyrSerAlaPheAsnMetIleGln 3165424 : ...............agGTAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAA : 3165531 384 : MetSerGluGlu : 387 ...|||:!!:!! GlnSerLysGln 3165532 : CAAAGCAAACAA : 3165545 vulgar: NvOr87 318 387 . KQ414646.1 3165264 3165545 + 118 M 52 156 5 0 2 I 0 70 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3165265 3165545 118 + . gene_id 4 ; sequence NvOr87 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3165265 3165420 . + . KQ414646.1 exonerate:protein2genome:local exon 3165265 3165420 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165421 3165422 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165421 3165494 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3165493 3165494 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165495 3165545 . + . KQ414646.1 exonerate:protein2genome:local exon 3165495 3165545 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3165265 3165545 118 + . alignment_id 4 ; Query NvOr87 ; Align 3165265 319 156 ; Align 3165495 371 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr87 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 115 -> 213 Target range: 3180035 -> 3180329 116 : AsnGluIleIleArgValLeuThrLeuAlaCysAlaPheLeuValAsnValThrMe : 134 ||| ! :!! !||| ! !.!!:!! !! !.!!.!.:!!|||.!.:!!:!!:! AsnTyrLeuAspArgLysAsnAlaValArgTyrThrMetValValGluMetSerVa 3180036 : AATTATCTCGACAGGAAAAACGCTGTCAGATACACAATGGTAGTCGAGATGTCGGT : 3180090 135 : tMetAsnLeuValThrLeuProLeuValThrSerGlyAspAsnArgThrLeuProM : 153 : ::: !:!! ! ! !!|||||||||!:! !.!.:!! !!! !||| !! lAlaSerThrIleLeuAsnSerLeuValThrAsnPheGlnHisGlyArgLeuThrT 3180091 : CGCCTCGACTATTTTAAACTCGTTAGTGACCAACTTTCAACACGGCAGACTAACCT : 3180147 154 : etArgValTrpLeuProTyrLysValAspSerAspMetSerTyrTrpLeuSerTyr : 171 |||! !|||!!!|||||| ! ! !!!! !:!: !!:! |||!!!||| yrArgGlyTrpPheProTyrAspTyrThrThrAlaValLeuPheProLeuThrTyr 3180148 : ACAGAGGCTGGTTCCCTTACGATTACACGACCGCCGTACTTTTTCCATTGACATAC : 3180201 172 : AlaHisGlnThrValGlyIleValPheValGlyThrGlyAlaValGlySerThrLe : 190 |||! ||| !:!! !!:!::!! ! !..! ! ! !|||..! ! !:! AlaLeuGlnLeuLeuCysValLeuValTyrSerTrpIleHisValSerValAspIl 3180202 : GCTCTGCAGCTATTATGCGTGCTCGTATATTCCTGGATCCACGTTTCAGTGGATAT : 3180258 191 : uMetIleAsnGlyPheMetTyrGlnValCysCysGlnPheGluIleLeuSerSerA : 209 !:!:.!! !|||.!.:!! |||:!!||||||||||||!!:|||||| |||| eLeuPhePheGlyLeuLeuMetGlnLeuCysCysGlnPheAspIleLeuPheSerA 3180259 : TCTCTTCTTCGGACTGTTGATGCAACTGTGCTGTCAATTCGAcattctcttctctc : 3180315 210 : rgPheGlnAsnLeu : 213 |||||...!:!:!! rgPheSerSerIle 3180316 : gtttcAGTAGCATA : 3180329 vulgar: NvOr87 115 213 . KQ414646.1 3180035 3180329 + 117 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180036 3180329 117 + . gene_id 5 ; sequence NvOr87 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180036 3180329 . + . KQ414646.1 exonerate:protein2genome:local exon 3180036 3180329 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180036 3180329 117 + . alignment_id 5 ; Query NvOr87 ; Align 3180036 116 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr87 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 141 -> 213 Target range: 3164382 -> 3164598 142 : LeuValThrSerGlyAspAsnArgThrLeuProMetArgValTrpLeuProTyrLy : 160 |||:!!|||..! !..!!:!|||! !||| !.!.|||!.!|||||||||||| ! LeuLeuThrAspPheSerSerArgLysLeuMetPheArgAlaTrpLeuProTyrAs 3164383 : CTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGCATGGTTACCCTACGA : 3164437 161 : sValAspSerAspMetSerTyrTrpLeuSerTyrAlaHisGlnThrValGlyIleV : 179 !..! !!! ! !!:! |||!!!!:!!.!||||||.!!:!!!.! . pTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAlaIleAlaAlaT 3164438 : TTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCGA : 3164494 180 : alPheValGlyThrGlyAlaValGlySerThrLeuMetIleAsnGlyPheMetTyr : 197 .!.!. ! !!|||..!::!||| ! ! !! !:!: !!.!|||!!.:!! ! hrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLeuIle 3164495 : CGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTGATT : 3164548 198 : GlnValCysCysGlnPheGluIleLeuSerSerArgPheGlnAsnLeu : 213 .!.:!!! !||||||||||||||||||..! !|||.!.::!|||:!! AsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnVal 3164549 : AATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTT : 3164598 vulgar: NvOr87 141 213 . KQ414646.1 3164382 3164598 + 115 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164383 3164598 115 + . gene_id 6 ; sequence NvOr87 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164383 3164598 . + . KQ414646.1 exonerate:protein2genome:local exon 3164383 3164598 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164383 3164598 115 + . alignment_id 6 ; Query NvOr87 ; Align 3164383 142 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr87 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 318 -> 386 Target range: 3156085 -> 3156422 319 : SerLeuAsnPheGlnGlnThrIleTyrGluIleAspTrpThrSerLeuSerThrAr : 337 ||||||.!..!!....!.! !|||!:!.!.:!!||||||||| !!!!!..!! ! SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 3156086 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 3156140 338 : gSerSerArgAspLeuValLeuIleMetMetArgAlaSerLysProIleIleMetT : 356 !!!!!.!|||:!!:!!:!! !!!:|||||||||||||||..!|||||| !!!: aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 3156141 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 3156197 357 : yrCysGlyHisPheIleValLeuSerLeuGluSerTyrIleGly >>>> Targe : 371 ! !!! !!.! ! :!! !:!!!:!|||!!:|||!:!:!!!.! leSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 3156198 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.......... : 3156244 372 : t Intron 1 >>>> IleLeuLysValSerTyrSerValPheAsnIleLeuArg : 383 133 bp :!:||||||..!|||||||||!.!!:!|||:!!|||!:! ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGln 3156245 : ...............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAA : 3156411 384 : MetSerGlu : 386 .!!||| ArgGlyGlu 3156412 : CGCGGCGAA : 3156422 vulgar: NvOr87 318 386 . KQ414646.1 3156085 3156422 + 113 M 52 156 5 0 2 I 0 129 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3156086 3156422 113 + . gene_id 7 ; sequence NvOr87 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3156086 3156241 . + . KQ414646.1 exonerate:protein2genome:local exon 3156086 3156241 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156242 3156243 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156242 3156374 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3156373 3156374 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156375 3156422 . + . KQ414646.1 exonerate:protein2genome:local exon 3156375 3156422 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3156086 3156422 113 + . alignment_id 7 ; Query NvOr87 ; Align 3156086 319 156 ; Align 3156375 371 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr87 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 141 -> 213 Target range: 3174329 -> 3174549 142 : LeuValThrSerGlyAspAsnArgThrLeuProMetArgValTrpLeuProTyrLy : 160 :!! !!|||:!! ! ! ! !||| !||||||:!:|||! !|||||| !!!:!:: IlePheThrAlaPheLysIleArgGluLeuProLeuArgGlyTrpLeuThrPheAr 3174330 : ATCTTCACGGCTTTTAAGATCAGAGAGTTACCCCTTCGAGGATGGTTAACCTTTCG : 3174384 161 : sValAspSerAspMetSerTyrTrp----LeuSerTyrAlaHisGlnThrValGly : 177 !:!! ! ||| !!!!:.!!|||!::####|||!!!||||||:!!||| !||| ! gLeu***SerHisIleGlyTyrPhe####LeuThrTyrAlaTyrGlnPheValThr 3174385 : ATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAGTTTGTAACT : 3174439 178 : IleValPheValGlyThrGlyAlaValGlySerThrLeuMetIleAsnGlyPheMe : 196 :!::!!|||:!! !:!!!.! !:!!|||||| ! !:!:.!!!:!|||.!.:! LeuIlePheLeuThrSerAlaIleIleGlySerAspAsnLeuPheSerGlyLeuLe 3174440 : CTGATATTCCTTACTTCTGCTATTATCGGTTCTGACAATCTATTCAGCGGACTGTT : 3174496 197 : tTyrGlnValCysCysGlnPheGluIleLeuSerSerArgPheGlnAsnLeu : 213 ! !!!.:!!! !||||||||||||||||||..! !|||.!.:!!!:!:!! uIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysSerIle 3174497 : GATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGAGCATT : 3174549 vulgar: NvOr87 141 213 . KQ414646.1 3174329 3174549 + 113 M 27 81 F 0 4 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174330 3174549 113 + . gene_id 8 ; sequence NvOr87 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174330 3174549 . + . KQ414646.1 exonerate:protein2genome:local exon 3174330 3174549 . + . insertions 0 ; deletions 0 ; frameshifts 4 KQ414646.1 exonerate:protein2genome:local similarity 3174330 3174549 113 + . alignment_id 8 ; Query NvOr87 ; Align 3174330 142 81 ; Align 3174415 169 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr87 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 122 -> 213 Target range: 3157797 -> 3158070 123 : ThrLeuAlaCysAlaPheLeuValAsnValThrMetMetAsnLeuValThrLeuPr : 141 |||:!!!.!! ! ! |||::: :::::: !.!. !:!! !..! ! ! ThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrValArgSe 3157798 : ACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATATACGTGAGATC : 3157852 142 : oLeuValThrSerGlyAspAsnArgThrLeuProMetArgValTrpLeuProTyrL : 160 !|||:!!! !..! !..!||||||! !||| !.!.|||!.!|||:!!|||||| rLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrA 3157853 : GCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACG : 3157909 161 : ysValAspSerAspMetSerTyrTrpLeuSerTyrAlaHisGlnThrValGlyIle : 178 ! !..! !!! ! !!:! |||!!!! !!.!||||||.!!:!!!.! spTyrSerProAlaProIlePheIleLeuThrSerValHisGlnAlaIleAlaSer 3157910 : ATTACTCCCCTGCGCCCATTTTTATCCTTACCTCCGTCCATCAAGCTATAGCCTCG : 3157963 179 : ValPheValGlyThrGlyAlaValGlySerThrLeuMetIleAsnGlyPheMetTy : 197 ..!.!. ! !!|||..!.!!||| ! ! ! !:!: !!.!|||!!.:!! ThrIleCysCysThrSerThrValThrValAspThrLeuTyrThrGlyLeuLeuIl 3157964 : ACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTATACACTGGCTTGTTGAT : 3158020 198 : rGlnValCysCysGlnPheGluIleLeuSerSerArgPheGlnAsnLeu : 213 !.!.:!!! !||||||||||||||||||..! !|||.!.::!|||:!! eAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnVal 3158021 : TAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTT : 3158070 vulgar: NvOr87 122 213 . KQ414646.1 3157797 3158070 + 106 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157798 3158070 106 + . gene_id 9 ; sequence NvOr87 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3157798 3158070 . + . KQ414646.1 exonerate:protein2genome:local exon 3157798 3158070 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157798 3158070 106 + . alignment_id 9 ; Query NvOr87 ; Align 3157798 123 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr89 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 232 Query range: 263 -> 396 Target range: 3155820 -> 3156425 264 : ValAsnGluIlePheLysSerValIlePheGlnGlnPheCysValSerSerIleVa : 282 :!!|||||| !|||:!!! !!.!|||||| ||||||...||||||!!!:!:!. IleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAlaValSerThrLeuAl 3155821 : ATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGTGAGTACGCTGGC : 3155875 283 : lValSerAlaSerIlePheGlnLeuSerThrLysProAspThrLysThrGluPheI : 301 !:!!!!! !!:!:!!!:!! !|||!!! !..! !! ||| !! !..!!:!: aIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValThrProIleArgTyrV 3155876 : GATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGACGCCGATTAGGTATG : 3155932 302 : leMetValLeuPheTyrSerIleCysLeuLeuValGluLeuPheIleTyrCysTrp : 319 !: :!!:!!.!.||||||! !|||:!!|||..!:!!:!!||||||||||||||| alGluIleIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysTrp 3155933 : TGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTGG : 3155986 320 : PheGlyAsnLysLeuMetPheGlu >>>> Target Intron 1 >>>> Ser : 328 !:!||||||:!!:!!! !.!.:!! 73 bp ||| TyrGlyAsnGluValLysLeuLys++ ++Ser 3155987 : TACGGGAACGAAGTTAAGCTGAAGgt.........................agAGC : 3156086 329 : LeuAsnPheHisGlnAlaValTyrAspAlaAspTrpThrValLeuSerAsnGluSe : 347 |||.!..!! !.!. !:!!!:! !! !||||||||| !!!!..!!!.! !! LeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAlaTh 3156087 : CTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGCTAC : 3156143 348 : rGlyLysAspLeuMetPheIleMetMetArgAlaSerLysProIleIleMetTyrC : 366 ! !::!:!!:!!:!: !!!:|||||||||||||||..!|||||| !!!: ! rLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleIleS 3156144 : AAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCATCA : 3156200 367 : ysGlyHisPheIleValLeuSerLeuGluThrPheLeuSer >>>> Target I : 380 !!! !!.! ! :!! !:!!!:!|||!!::!!|||:!!:!! 133 erValArgValLeuSerValAsnLeuAspSerPheValAla++ 3156201 : GCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt............. : 3156244 381 : ntron 2 >>>> IleLeuLysValSerTyrSerValPheAsnValLeuArgArg : 393 bp :!:||||||..!|||||||||!.!!:!|||||||||!:!||| ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGlnArg 3156245 : ............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAACGC : 3156414 394 : SerHisGly : 396 .!!.!.||| GlyGluGly 3156415 : GGCGAAGGC : 3156425 vulgar: NvOr89 263 396 . KQ414646.1 3155820 3156425 + 232 M 64 192 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 129 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155821 3156425 232 + . gene_id 1 ; sequence NvOr89 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3155821 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155821 3156012 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156013 3156014 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156013 3156085 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3156084 3156085 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156086 3156241 . + . KQ414646.1 exonerate:protein2genome:local exon 3156086 3156241 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156242 3156243 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156242 3156374 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3156373 3156374 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156375 3156425 . + . KQ414646.1 exonerate:protein2genome:local exon 3156375 3156425 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155821 3156425 232 + . alignment_id 1 ; Query NvOr89 ; Align 3155821 264 192 ; Align 3156086 328 156 ; Align 3156375 380 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr89 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 192 Query range: 7 -> 222 Target range: 3179607 -> 3180329 8 : GluLysMetArgIleLeuGlnValProPheLysValLeuThrTrpSerGlyValTr : 26 :::||| ::!..!||| ||| |||::! .!!||| !|| LysLysLysMetLysValSerValLeuPheThrPheLeuSerIleGlyGlyCysTr 3179608 : aagaagaagatgaaagtATCGGtactttttacatttctcaGTATCGGTGGCTGTTG : 3179662 27 : pMetProGluAspTrpThrGlnAsnGlnArgLysLeuLysTyrAsnLeuPheSerP : 45 |! ||| ...|||:!!..!!.. ! !:!! ! !! ||||||:!!!:!!!! pArgProIleSerTrpSerSerThrTyrLysThrAlaIleTyrAsnValTyrThrV 3179663 : GAGACCGATCTCGTGGTCTTCGACGTACAAAACGGCAATCTACAATGTCTACACCG : 3179719 46 : heValCysIleGlyLeuMetThrIleGlnSerCysSerLeuThrValTyrLeuMet : 63 !!:!! :!! !:!! ..!! ! ! ! !|||! ! !! ! !:!!.!. alLeuValLeuIleMetGlyValAsnPheMetValSerGlnPheGlySerMetPhe 3179720 : TTCTCGTATTAATCATGGGTGTTAATTTCATGGTTTCGCAATTTGGCAGCATGTTC : 3179773 64 : MetSerLysThrTrpSerGlnPheValGluThrLeuPheLeuIleProProGlyLe : 82 ! ! !:!!||| ..!.!.||||||!!: ! !!:!:!! ! ! !!! !!! ThrIleGluThrValGlnAspPheValAspLeuThrTyrIleCysValSerValPh 3179774 : ACCATAGAAACCGTACAAGATTTCGTCGACCTTACTTACATATGCGTCTCCGTGTT : 3179830 83 : uSerAsnLeuGlnLysIlePheValIleMetLeuHisArgLysLysValIleAspL : 101 ! !..!! ! |||:!:! !:!::!!!!!:!!|||||| ! :!!||||||| eValGlyCysCysLysLeuSerAsnValValPheTyrArgLysAspIleIleAspL 3179831 : CGTCGGTTGTTGCAAGCTGTCAAACGTGGTGTTCTATCGGAAAGATATCATAGACC : 3179887 102 : euValAsnMetPheGluAsnGlyHisCysIleProArgThrAlaAspGluTrpSer : 119 ||:!!|||!!:||| !.!.! !! !||| ! ! !!.! !!!:||| ..! euMetAsnIlePheMetGluAspProCysAlaCysSerAsnLysGluGluAspGln 3179888 : TGATGAACATCTTCATGGAGGATCCTTGTGCATGTTCGAACAAGGAGGAGGACCAG : 3179941 120 : IleGlnGlnArgTyrAspAlaThrIle{Ar} >>>> Target Intron 1 >> : 129 :!:||| !|||||||||! ! !:!!{||} 77 bp ValGlnAlaArgTyrAspAspGlnLeu{Ar}++ 3179942 : GTGCAAGCGAGATACGACGATCAATTA{CG}gt....................... : 3179975 130 : >> {g}ValValThrLeuValCysPheValLeuValAsnValThrMetValAsnM : 146 {|} ! !.!!:!! !! ! :!!:!!|||.!.:!!:!!:!:!.!:::! ++{g}LysAsnAlaValArgTyrThrMetValValGluMetSerValAlaSerT 3179976 : ..ag{G}AAAAACGCTGTCAGATACACAATGGTAGTCGAGATGTCGGTCGCCTCGA : 3180099 147 : etValThrThrProLeuPheLeuLysAlaAspGluArgIleLeuProMetLysVal : 164 :!! !!.! !!||| ! !!!. !.!..!. !!! !||| !! !:!! ! hrIleLeuAsnSerLeuValThrAsnPheGlnHisGlyArgLeuThrTyrArgGly 3180100 : CTATTTTAAACTCGTTAGTGACCAACTTTCAACACGGCAGACTAACCTACAGAGGC : 3180153 165 : TrpLeuProTyrSerIleGluThrAspPhePheTyrTrpLeuSerTyrMetHisGl : 183 |||!!!||||||..! ! !|||! ! ! .!!!:! |||!!!||| ! || TrpPheProTyrAspTyrThrThrAlaValLeuPheProLeuThrTyrAlaLeuGl 3180154 : TGGTTCCCTTACGATTACACGACCGCCGTACTTTTTCCATTGACATACGCTCTGCA : 3180210 184 : nThrLeuGlyValThrLeuValGlySerGlyIleIleGlySerThrLeuLeuIleA : 202 | !||| !!||| !:!! !..!!!! ! !:!!..! ! !:!!|||.!! nLeuLeuCysValLeuValTyrSerTrpIleHisValSerValAspIleLeuPheP 3180211 : GCTATTATGCGTGCTCGTATATTCCTGGATCCACGTTTCAGTGGATATTCTCTTCT : 3180267 203 : snGlyPheValTyrGlnValCysCysGlnPheGluIleLeuSerSerArgLeuGlu : 220 !|||.!.:!! |||:!!||||||||||||!!:|||||| ||||||...... heGlyLeuLeuMetGlnLeuCysCysGlnPheAspIleLeuPheSerArgPheSer 3180268 : TCGGACTGTTGATGCAACTGTGCTGTCAATTCGAcattctcttctctcgtttcAGT : 3180321 221 : LysLeu : 222 !..:!! SerIle 3180322 : AGCATA : 3180329 vulgar: NvOr89 7 222 . KQ414646.1 3179607 3180329 + 192 M 121 363 S 0 2 5 0 2 I 0 73 3 0 2 S 1 1 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3179608 3180329 192 + . gene_id 2 ; sequence NvOr89 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3179608 3179972 . + . KQ414646.1 exonerate:protein2genome:local exon 3179608 3179972 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3179973 3179974 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3179973 3180049 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3180048 3180049 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3180050 3180329 . + . KQ414646.1 exonerate:protein2genome:local exon 3180050 3180329 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3179608 3180329 192 + . alignment_id 2 ; Query NvOr89 ; Align 3179608 8 363 ; Align 3180051 130 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr89 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 255 -> 324 Target range: 3178375 -> 3178582 256 : TyrLeuPheSerIleAlaGluThrValAsnGluIlePheLysSerValIlePheGl : 274 :::::: .!!.!!:!!||||||||| :!:|||:!!! !:!!||||||! PheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLe 3178376 : ttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCT : 3178430 275 : nGlnPheCysValSerSerIleValValSerAlaSerIlePheGlnLeuSerThrL : 293 !||||||! !:!!||||||! |||:!!!!! !||||||!:!:!!:!!||||||! uGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrI 3178431 : GCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGA : 3178487 294 : ysProAspThrLysThrGluPheIleMetValLeuPheTyrSerIleCysLeuLeu : 311 ! !!..! !.!.|||:!! ! ! !! !|||! ! !|||:!!||| leAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeu 3178488 : TTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTC : 3178541 312 : ValGluLeuPheIleTyrCysTrpPheGlyAsnLysLeu : 324 ..!:!!:!!!:!:!!||||||||||||||||||:!!:!! ThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluVal 3178542 : ACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTG : 3178582 vulgar: NvOr89 255 324 . KQ414646.1 3178375 3178582 + 150 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178376 3178582 150 + . gene_id 3 ; sequence NvOr89 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178376 3178582 . + . KQ414646.1 exonerate:protein2genome:local exon 3178376 3178582 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178376 3178582 150 + . alignment_id 3 ; Query NvOr89 ; Align 3178376 256 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr89 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 259 -> 324 Target range: 3158455 -> 3158647 260 : IleAlaGluThrValAsnGluIlePheLysSerValIlePheGlnGlnPheCysVa : 278 .!!:!!:!!! !||||||||| !|||||| !:!!:!:.!!...|||||||||:! PheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIl 3158456 : TTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCAT : 3158510 279 : lSerSerIleValValSerAlaSerIlePheGlnLeuSerThrLysProAspThrL : 297 !|||! ! |||:!!!!! !!:!:!!!:!!:!:!! |||:!! ! ! ! ! eSerMetSerValIleCysPheAsnLeuTyrArgMet---ThrGlnIleLysMetA 3158511 : AAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATG---ACACAGATCAAAATGG : 3158564 298 : ysThrGluPheIleMetValLeuPheTyrSerIleCysLeuLeuValGluLeuPhe : 315 ! |||:::|||::: ::::!!.!!||||||.!!||| !:!!..!:!!:!!||| spThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePhe 3158565 : AcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTT : 3158618 316 : IleTyrCysTrpPheGlyAsnLysLeu : 324 !|||||||||!:!||||||:!!:!! TyrTyrCysTrpTyrGlyAsnGluVal 3158619 : TACTATTGTTGGTACGGCAACGAAGTG : 3158647 vulgar: NvOr89 259 324 . KQ414646.1 3158455 3158647 + 138 M 31 93 G 1 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158456 3158647 138 + . gene_id 4 ; sequence NvOr89 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158456 3158647 . + . KQ414646.1 exonerate:protein2genome:local exon 3158456 3158647 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3158456 3158647 138 + . alignment_id 4 ; Query NvOr89 ; Align 3158456 260 93 ; Align 3158549 292 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr89 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 259 -> 324 Target range: 3164983 -> 3165175 260 : IleAlaGluThrValAsnGluIlePheLysSerValIlePheGlnGlnPheCysVa : 278 .!!:!!:!!! !||||||||| !|||||| !:!!:!:.!!...|||||||||:! PheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIl 3164984 : TTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCAT : 3165038 279 : lSerSerIleValValSerAlaSerIlePheGlnLeuSerThrLysProAspThrL : 297 !|||! ! |||:!!!!! !!:!:!!!:!!:!:!! |||:!! ! ! ! ! eSerMetSerValIleCysPheAsnLeuTyrArgMet---ThrGlnIleLysMetA 3165039 : AAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATG---ACACAGATCAAAATGG : 3165092 298 : ysThrGluPheIleMetValLeuPheTyrSerIleCysLeuLeuValGluLeuPhe : 315 ! |||:::|||::: ::::!!.!!||||||.!!||| !:!!..!:!!:!!||| spThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePhe 3165093 : AcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTT : 3165146 316 : IleTyrCysTrpPheGlyAsnLysLeu : 324 !|||||||||!:!||||||:!!:!! TyrTyrCysTrpTyrGlyAsnGluVal 3165147 : TACTATTGCTGGTACGGCAACGAAGTG : 3165175 vulgar: NvOr89 259 324 . KQ414646.1 3164983 3165175 + 138 M 31 93 G 1 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164984 3165175 138 + . gene_id 5 ; sequence NvOr89 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164984 3165175 . + . KQ414646.1 exonerate:protein2genome:local exon 3164984 3165175 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3164984 3165175 138 + . alignment_id 5 ; Query NvOr89 ; Align 3164984 260 93 ; Align 3165077 292 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr89 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 255 -> 324 Target range: 3180451 -> 3180658 256 : TyrLeuPheSerIleAlaGluThrValAsnGluIlePheLysSerValIlePheGl : 274 !:!! !! !|||:!!||||||! !:!!|||!!:! !.!.:!! !..!!!:||| PheCysCysSerLeuAlaGluIleMetAsnAspSerLeuGlnLeuThrMetPheAl 3180452 : TTCTGTTGCAGTTTAGCTGAAATAATGAACGACAGTCTACAGCTGACGATGTTCGC : 3180506 275 : nGlnPheCysValSerSerIleValValSerAlaSerIlePheGlnLeuSerThrL : 293 ||||||! !! !|||! !!!:|||:!!!!! !|||:!:.!!||||||! !!.! aGlnPhePheGlySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnA 3180507 : CCAGTTTTTCGGAAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACG : 3180563 294 : ysProAspThrLysThrGluPheIleMetValLeuPheTyrSerIleCysLeuLeu : 311 ! ! ! !!..|||||||||:!! !..!:::|||||| ::!||| laAspIleLeuSerThrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeu 3180564 : CAGATATTCTCAGCACCGAATTCTTAGCGACGAtattttatctgagctcgatACTG : 3180617 312 : ValGluLeuPheIleTyrCysTrpPheGlyAsnLysLeu : 324 :!!:!! !|||:!!|||||||||!:!||||||:!!:!! LeuGlnSerPheLeuTyrCysTrpTyrGlyAsnGluVal 3180618 : CTGCAGAGCTTTCTTTACTGTTGGTACGGAAACGAAGTG : 3180658 vulgar: NvOr89 255 324 . KQ414646.1 3180451 3180658 + 133 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180452 3180658 133 + . gene_id 6 ; sequence NvOr89 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180452 3180658 . + . KQ414646.1 exonerate:protein2genome:local exon 3180452 3180658 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180452 3180658 133 + . alignment_id 6 ; Query NvOr89 ; Align 3180452 256 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr89 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 157 -> 222 Target range: 3160140 -> 3160338 158 : ArgIleLeuProMetLysValTrpLeuProTyrSerIleGluThrAspPhe<->Ph : 175 ||| ||||||:!:::!||||||||||||!:!..! !..!.!! !!. .! ArgGluLeuProLeuArgValTrpLeuProPheAspTyrArgAlaThrLeuGlyIl 3160141 : AGAGAGTTACCCCTTCGAGTATGGTTACCTTTCGATTATAGAGCCACATTGGGTAT : 3160195 176 : eTyrTrpLeuSerTyrMetHisGlnThrLeuGlyValThrLeuValGlySerGlyI : 194 !!:! ! |||!!!||| :!!||| !:!! !:!!! !!!!:!! !!!!!.!| ePheSerLeuThrTyrAlaTyrGlnPheValThrLeuIlePheIleThrThrAlaI 3160196 : TTTCAGCCTTACCTACGCTTATCAGTTTGTAACTCTGATATTCATTACTACCGCGA : 3160252 195 : leIleGlySerThrLeuLeuIleAsnGlyPheValTyrGlnValCysCysGlnPhe : 212 ||!!:|||!!! ! !|||.!!!:!|||.!.:!! !!!.:!!! !||||||||| leMetGlyThrAspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPhe 3160253 : TTATGGGTACTGACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTC : 3160306 213 : GluIleLeuSerSerArgLeuGluLysLeu : 222 |||||||||..! !||||||:!!!..:!! GluIleLeuGlnHisArgLeuLysSerIle 3160307 : GAGATACTCCAACATCGTCTGAAGAGCATT : 3160338 vulgar: NvOr89 157 222 . KQ414646.1 3160140 3160338 + 107 M 17 51 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160141 3160338 107 + . gene_id 7 ; sequence NvOr89 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160141 3160338 . + . KQ414646.1 exonerate:protein2genome:local exon 3160141 3160338 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160141 3160338 107 + . alignment_id 7 ; Query NvOr89 ; Align 3160141 158 51 ; Align 3160195 175 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr89 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 259 -> 322 Target range: 3153456 -> 3153642 260 : IleAlaGluThrValAsnGluIlePheLysSerValIlePheGlnGlnPheCysVa : 278 :!:|||:!!! !|||||||||! .!! !!:!||| ! !||||||...:! LeuAlaGlnIleValAsnGluLysLeuGlyAsnValSerSerIleGlnPheAlaIl 3153457 : TTGGCGCAAATAGTGAACGAGAAGCTTGGAAATGTCTCGAGTATACAGTTCGCGAT : 3153511 279 : lSerSerIleValValSerAlaSerIlePheGlnLeuSerThrLysProAspThrL : 297 !|||!!! !!.!:!!!!! !!:!:!!!:!!:!:!!|||..! !!!: ! eSerThrGlyAlaIleCysPheAsnLeuTyrArgMetSerVal---IleGluLeuG 3153512 : AAGCACAGGAGCGATATGCTTCAATCTCTATCGAATGTCGGTG---ATAGAACTCG : 3153565 298 : ysThrGluPheIleMetValLeuPheTyrSerIleCysLeuLeuValGluLeuPhe : 315 !!:!!|||:!: !.!||| ! !!!!:!!|||||||||!.!:!!:!!||| lyProLysPheValGluAlaLeuThrIleThrValCysLeuLeuAlaGlnIlePhe 3153566 : GTCCAAAGTTTGTGGAAGCGTTAACTATCACAGTATGCTTACTCGCGCAGATATTT : 3153619 316 : IleTyrCysTrpPheGlyAsn : 322 !|||||||||!::|||||| TyrTyrCysTrpTyrGlyAsn 3153620 : TACTATTGTTGGTAcggtaac : 3153642 vulgar: NvOr89 259 322 . KQ414646.1 3153456 3153642 + 101 M 33 99 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153457 3153642 101 + . gene_id 8 ; sequence NvOr89 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153457 3153642 . + . KQ414646.1 exonerate:protein2genome:local exon 3153457 3153642 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3153457 3153642 101 + . alignment_id 8 ; Query NvOr89 ; Align 3153457 260 99 ; Align 3153556 294 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr89 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 150 -> 222 Target range: 3164382 -> 3164598 151 : LeuPheLeuLysAlaAspGluArgIleLeuProMetLysValTrpLeuProTyrSe : 169 |||!!. ! ! !..!...|||! !||| !.!.::!!.!||||||||||||.. LeuLeuThrAspPheSerSerArgLysLeuMetPheArgAlaTrpLeuProTyrAs 3164383 : CTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGCATGGTTACCCTACGA : 3164437 170 : rIleGluThrAspPhePheTyrTrpLeuSerTyrMetHisGlnThrLeuGlyValT : 188 ! !... !!! !.!!!:! |||!!!!:!:!:||||||.!!:!!!.!!.!| pTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAlaIleAlaAlaT 3164438 : TTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCGA : 3164494 189 : hrLeuValGlySerGlyIleIleGlySerThrLeuLeuIleAsnGlyPheValTyr : 206 ||:!! ! !!!!!..!! !:!! ! ! !! !||| !!.!|||!!.:!! ! hrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLeuIle 3164495 : CGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTGATT : 3164548 207 : GlnValCysCysGlnPheGluIleLeuSerSerArgLeuGluLysLeu : 222 .!.:!!! !||||||||||||||||||..! !||||||..!!!.:!! AsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnVal 3164549 : AATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTT : 3164598 vulgar: NvOr89 150 222 . KQ414646.1 3164382 3164598 + 101 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164383 3164598 101 + . gene_id 9 ; sequence NvOr89 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164383 3164598 . + . KQ414646.1 exonerate:protein2genome:local exon 3164383 3164598 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164383 3164598 101 + . alignment_id 9 ; Query NvOr89 ; Align 3164383 151 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr81 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 201 Query range: 3 -> 121 Target range: 3179622 -> 3179973 4 : LeuSerLeuThrPheThrPhePheLysIleTyrGlyPheTrpArgProLeuSerTr : 22 ::!|||::: |||||||||......||| !|||! !|||||||||:!!||||| ValSerValLeuPheThrPheLeuSerIleGlyGlyCysTrpArgProIleSerTr 3179623 : gtATCGGtactttttacatttctcaGTATCGGTGGCTGTTGGAGACCGATCTCGTG : 3179677 23 : pLysSerProThrLeuGlyPheLeuTyrAspValTyrThrPheValMetPheMetI : 41 |...||| !! ! ! ! :!!|||:!!||||||||| !!:!!:!:!!.!!:! pSerSerThrTyrLysThrAlaIleTyrAsnValTyrThrValLeuValLeuIleM 3179678 : GTCTTCGACGTACAAAACGGCAATCTACAATGTCTACACCGTTCTCGTATTAATCA : 3179734 42 : leValPheThrPheAlaLeuSerGlnLeuMetSerIleIleLeuThrValGlnThr : 59 !:! ! !!!.!||| !:!!||||||!!! ||| !!:!!!|||:!!:!!||| etGlyValAsnPheMetValSerGlnPheGlySer---MetPheThrIleGluThr 3179735 : TGGGTGTTAATTTCATGGTTTCGCAATTTGGCAGC---ATGTTCACCATAGAAACC : 3179785 60 : ValAspGluPheThrSerSerSerPheIleLeuLeuSerIleValSerAlaCysPh : 78 |||.!.!!:|||..!..! !!!!!:!|||! !:!!|||:!: !! !!.!|||! ValGlnAspPheValAspLeuThrTyrIleCysValSerValPheValGlyCysCy 3179786 : GTACAAGATTTCGTCGACCTTACTTACATATGCGTCTCCGTGTTCGTCGGTTGTTG : 3179842 79 : eLysAlaSerAsnLeuLeuLeuLysArgLysSerLeuValArgLeuLeuAsnValL : 97 !||| !||||||:!!:!!!!! ! ||||||..!:!!:!! !|||:!!|||:!!! sLysLeuSerAsnValValPheTyrArgLysAspIleIleAspLeuMetAsnIleP 3179843 : CAAGCTGTCAAACGTGGTGTTCTATCGGAAAGATATCATAGACCTGATGAACATCT : 3179899 98 : euIleSerThrThrCysLysTyrGlnAspAspAspGluLysMetIleGlnAspMet : 115 !!!!:..! ! !!||| !! !..!:!! ! !!:||| ! ..!:!:|||! ! heMetGluAspProCysAlaCysSerAsnLysGluGluAspGlnValGlnAlaArg 3179900 : TCATGGAGGATCCTTGTGCATGTTCGAACAAGGAGGAGGACCAGGTGCAAGCGAGA : 3179953 116 : PheAspLysLysAlaArg : 121 !:!||| ! :!! !||| TyrAspAspGlnLeuArg 3179954 : TACGACGATCAATTACGG : 3179973 vulgar: NvOr81 3 121 . KQ414646.1 3179622 3179973 + 201 M 49 147 G 1 0 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3179623 3179973 201 + . gene_id 1 ; sequence NvOr81 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3179623 3179973 . + . KQ414646.1 exonerate:protein2genome:local exon 3179623 3179973 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3179623 3179973 201 + . alignment_id 1 ; Query NvOr81 ; Align 3179623 4 147 ; Align 3179770 54 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr81 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 186 Query range: 247 -> 324 Target range: 3178372 -> 3178603 248 : AsnCysIlePheGlnPheSerLysAspIleAsnAspThrPheSerMetAlaLeuPh : 266 ||| ||| :::|||!!!:!! :!:||| !..!|||..! !:!!|| AsnPheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePh 3178373 : aatttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTT : 3178427 267 : eAlaGlnPhePheIleAlaAlaLeuValIleCysSerSerValTyrGluLeuSerL : 285 | !||||||! !|||::!:!! !|||:!:|||! !|||:!!|||:!!:!!|||! eLeuGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerT 3178428 : CCTGCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGA : 3178484 286 : ysIleValLeuLeuSerSerAspPheValAlaLeuLeuSerTyrLeuSerCysMet : 303 !||| !! !!!!|||! !:!!|||||| !! ! !|||||||||!!!|||||| hrIleAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMet 3178485 : CGATTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATG : 3178538 304 : LeuValGlnIlePheLeuTyrCysTrpTyrGlyThrAlaValThrMetLysSerTr : 322 |||..!|||:!:!:!||||||||||||!:!|||!.!! !||||||:!!||| ! ! LeuThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLysValGl 3178539 : CTCACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAGGTTGG : 3178595 323 : pSerVal : 324 !!!||| yThrVal 3178596 : CACCGTG : 3178603 vulgar: NvOr81 247 324 . KQ414646.1 3178372 3178603 + 186 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178373 3178603 186 + . gene_id 2 ; sequence NvOr81 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178373 3178603 . + . KQ414646.1 exonerate:protein2genome:local exon 3178373 3178603 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178373 3178603 186 + . alignment_id 2 ; Query NvOr81 ; Align 3178373 248 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr81 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 173 Query range: 120 -> 214 Target range: 3150032 -> 3150314 121 : ArgArgAsnThrValTrpTyrMetAlaLeuIleGlnSerSerValPheMetIleTh : 139 ||| ! |||:!!!::|||! ! !|||:!::!! !!!!|||.!! !!:! ArgSerValThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCysMetIl 3150033 : AGGTCGGTGACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTGTATGAT : 3150087 140 : rLeuGlnSerIlePheIleAsnIleProGlnLysThrLeuProPheProAlaTrpL : 158 !|||...|||:!:.!! !:!!.!! !:!!::! !||| !!!:! !||||||| eLeuSerSerLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgAlaTrpL 3150088 : CCTCTCTTCGTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAGCCTGGC : 3150144 159 : euProTyrAsnTyrSerAsnThrArgLeuTyrAlaIleSerTyrThrHisGlnVal : 176 |||||!:!:!!|||||| !!! !! !||| !|||:!!|||..!||||||:!! euProPheAspTyrSerLeuProThrTyrTyrTyrIleAlaTyrValHisGlnIle 3150145 : TGCCCTTCGATTACTCTCTGCCAACTTACTATTACATCGCGTACGTTCATCAGATC : 3150198 177 : IleGlyAsnAlaAlaSerAlaThrLeuHisAlaAlaAsnAspAlaLeuIleSerGl : 195 :!!!.! !!.!!!!:!! !! !:!!!.!||| !|||!.!:!!|||!!!|| ValAlaLeuIleGlyThrSerLeuSerAsnValAlaCysAspValIleIleCysGl 3150199 : GTCGCGCTGATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCATCTGCGG : 3150255 196 : yIleMetLeuGlnIleCysAlaGlnLeuGluIleLeuLysHisArgIleLeuLysL : 214 |:!::!::!!!!. !|||!.!|||! !||||||||||||||||||!!: !:!!: yLeuLeuValHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMetLysGluM 3150256 : GTTGCTCGTTCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATGAAGGAGA : 3150312 215 : eu : 214 !! et 3150313 : TG : 3150314 vulgar: NvOr81 120 214 . KQ414646.1 3150032 3150314 + 173 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150033 3150314 173 + . gene_id 3 ; sequence NvOr81 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150033 3150314 . + . KQ414646.1 exonerate:protein2genome:local exon 3150033 3150314 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150033 3150314 173 + . alignment_id 3 ; Query NvOr81 ; Align 3150033 121 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr81 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 173 Query range: 120 -> 216 Target range: 3157788 -> 3158076 121 : ArgArgAsnThrValTrpTyrMetAlaLeuIleGlnSerSerValPheMetIleTh : 139 ||| !!||||||:!! ! ||| !:::|||::: |||..!|||.!.||| ArgTrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTy 3157789 : AGATGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATATA : 3157843 140 : rLeuGlnSerIlePheIleAsnIleProGlnLysThrLeuProPheProAlaTrpL : 158 !:!!::!|||:!!!!.|||:!!.!! !.!.!:!! !||| !|||! !||||||: rValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpI 3157844 : CGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGA : 3157900 159 : euProTyrAsnTyrSerAsnThrArgLeuTyrAlaIleSerTyrThrHisGlnVal : 176 !!||||||:!!|||||| !.!!! !:!!!:! !:!!!!!! !..!||||||!.! leProTyrAspTyrSerProAlaProIlePheIleLeuThrSerValHisGlnAla 3157901 : TACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTCCGTCCATCAAGCT : 3157954 177 : IleGlyAsnAlaAlaSerAlaThrLeuHisAlaAlaAsnAspAlaLeuIleSerGl : 195 |||!.!:::.!! !!!!..!|||! ! !!.!.!! |||.!!||| !!!!|| IleAlaSerThrIleCysCysThrSerThrValThrValAspThrLeuTyrThrGl 3157955 : ATAGCCTCGACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTATACACTGG : 3158011 196 : yIleMetLeuGlnIleCysAlaGlnLeuGluIleLeuLysHisArgIleLeuLysL : 214 |:!::!!:!!.!.|||! !..!|||!!!|||||||||:!!||||||:!! !!!.: yLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnV 3158012 : CTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACG : 3158068 215 : euProThr : 216 !! !||| alLysThr 3158069 : TTAAAACT : 3158076 vulgar: NvOr81 120 216 . KQ414646.1 3157788 3158076 + 173 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157789 3158076 173 + . gene_id 4 ; sequence NvOr81 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3157789 3158076 . + . KQ414646.1 exonerate:protein2genome:local exon 3157789 3158076 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157789 3158076 173 + . alignment_id 4 ; Query NvOr81 ; Align 3157789 121 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr81 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 168 Query range: 120 -> 216 Target range: 3164316 -> 3164604 121 : ArgArgAsnThrValTrpTyrMetAlaLeuIleGlnSerSerValPheMetIleTh : 139 ||| !!||||||:!! ! ||| !::!|||:!! !! !!!!!.!||| !||| ArgTrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleCysAlaPheTrpIleTy 3164317 : AGATGGAACACGATTGGCTACTGGAGTTTACTATTAATTTGTGCGTTCTGGATATA : 3164371 140 : rLeuGlnSerIlePheIleAsnIleProGlnLysThrLeuProPheProAlaTrpL : 158 !:!!::!|||:!!!!.! !:!!.!! !...!:!! !||| !|||! !||||||| rValArgSerLeuLeuThrAspPheSerSerArgLysLeuMetPheArgAlaTrpL 3164372 : CGTGAGATCGCTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGCATGGT : 3164428 159 : euProTyrAsnTyrSerAsnThrArgLeuTyrAlaIleSerTyrThrHisGlnVal : 176 ||||||||:!!|||||| !.!!! !:!!!:! !:!!!!!!:!..!||||||!.! euProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAla 3164429 : TACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCT : 3164482 177 : IleGlyAsnAlaAlaSerAlaThrLeuHisAlaAlaAsnAspAlaLeuIleSerGl : 195 |||!.! .!! !!!!..!|||! ! !!.!.!! |||:!!||| !!!!|| IleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGl 3164483 : ATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGG : 3164539 196 : yIleMetLeuGlnIleCysAlaGlnLeuGluIleLeuLysHisArgIleLeuLysL : 214 |:!::!!:!!.!.|||! !..!|||!!!|||||||||:!!||||||:!! !!!.: yLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnV 3164540 : CTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACG : 3164596 215 : euProThr : 216 !! !||| alLysThr 3164597 : TTAAAACT : 3164604 vulgar: NvOr81 120 216 . KQ414646.1 3164316 3164604 + 168 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164317 3164604 168 + . gene_id 5 ; sequence NvOr81 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164317 3164604 . + . KQ414646.1 exonerate:protein2genome:local exon 3164317 3164604 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164317 3164604 168 + . alignment_id 5 ; Query NvOr81 ; Align 3164317 121 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr81 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 251 -> 320 Target range: 3155805 -> 3156012 252 : GlnPheSerLysAspIleAsnAspThrPheSerMetAlaLeuPheAlaGlnPhePh : 270 ::!|||!!! ||||||!!: !|||..!||||||:!!|||.!!|||||| ArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAl 3155806 : AGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGC : 3155860 271 : eIleAlaAlaLeuValIleCysSerSerValTyrGluLeuSerLysIleValLeuL : 289 :!:::!.!!|||!.!||||||! !!:!:!!||| !|||!!! ! !! !:!! aValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValT 3155861 : GGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGA : 3155917 290 : euSerSerAspPheValAlaLeuLeuSerTyrLeuSerCysMetLeuValGlnIle : 307 ! !!! ! !:!|||! !:!!:!!! !||| !||||||||||||..!|||||| hrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIle 3155918 : CGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATA : 3155971 308 : PheLeuTyrCysTrpTyrGlyThrAlaValThrMetLys : 320 |||:!!|||||||||||||||!.!! !|||! !:!!||| PheIleTyrCysTrpTyrGlyAsnGluValLysLeuLys 3155972 : TTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAG : 3156012 vulgar: NvOr81 251 320 . KQ414646.1 3155805 3156012 + 167 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155806 3156012 167 + . gene_id 6 ; sequence NvOr81 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155806 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155806 3156012 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155806 3156012 167 + . alignment_id 6 ; Query NvOr81 ; Align 3155806 252 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr81 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 163 Query range: 256 -> 320 Target range: 3180475 -> 3180667 257 : IleAsnAspThrPheSerMetAlaLeuPheAlaGlnPhePheIleAlaAlaLeuVa : 275 !!:||||||!:!.!...!:!!.!!:!!||||||||||||||| !::! !:!!|| MetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePheGlySerPheMetVa 3180476 : ATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTTCGGAAGCTTTATGGT : 3180530 276 : lIleCysSerSerValTyrGluLeuSerLysIleValLeuLeuSerSerAspPheV : 294 ||||||| !|||:!! !:!!|||! !!!. !! !:!!||||||!!!!!:|||: lIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleLeuSerThrGluPheL 3180531 : GATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTCTCAGCACCGAATTCT : 3180587 295 : alAlaLeuLeuSerTyrLeuSerCysMetLeuValGlnIlePheLeuTyrCysTrp : 312 !!||| !::: ||||||||| :::|||:!!|||! !||||||||||||||| euAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPheLeuTyrCysTrp 3180588 : TAGCGACGAtattttatctgagctcgatACTGCTGCAGAGCTTTCTTTACTGTTGG : 3180641 313 : TyrGlyThrAlaValThrMetLys : 320 ||||||!.!! !|||! !! !||| TyrGlyAsnGluValArgThrLys 3180642 : TACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: NvOr81 256 320 . KQ414646.1 3180475 3180667 + 163 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180476 3180667 163 + . gene_id 7 ; sequence NvOr81 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180476 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180476 3180667 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180476 3180667 163 + . alignment_id 7 ; Query NvOr81 ; Align 3180476 257 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr81 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 0 -> 121 Target range: 3177231 -> 3177594 1 : MetHisIleLeuSerLeuThrPheThrPhePheLysIleTyrGlyPheTrpArgPr : 19 ||||||! ||| !!||| !!|||.!!.!..!!! !! !|||!:!|||!:!|| MetHisArgLeuProLeuProPheAlaLeuLeuThrCysCysGlyTyrTrpLysPr 3177232 : ATGCATAGGCTTCCTTTGCCTTTCGCTCTGCTTACTTGCTGCGGCTACTGGAAACC : 3177286 20 : oLeuSerTrpLysSerProThrLeuGlyPhe<->LeuTyrAspValTyrThrPheV : 37 | !!.!||| !:!! !:!!||| !!:! |||||||||||||||:!! ! oThrLysTrpProAlaSerSerLeuLysTyrTrpLeuTyrAspValTyrSerValP 3177287 : GACAAAATGGCCAGCTAGTTCGCTGAAATACTGGCTGTACGACGTTTACTCGGTGT : 3177343 38 : alMetPheMetIleValPheThrPheAlaLeuSerGlnLeuMetSerIleIleLeu : 55 !!||| !!.!.:!::!:::: |||...... ! !! !!!:..! :!::!! heMetValPheLeuLeuTyrPhePheThrPheCysAlaCysIleAspSerLeuIle 3177344 : TTATGGTCTTTTTGCTctattttttcacgttttgCGCATGCATAGACTCGTTGATC : 3177397 56 : ThrValGlnThrValAspGluPheThrSerSerSerPheIleLeuLeuSerIleVa : 74 !:! :!! !:!! ! !.!.|||..!!.!! !! !:!:!!!:!!|||:!: ! Ser---LysAspLeuLysThrMetThrAspLysPheSerLeuPheIleSerValPh 3177398 : AGC---AAAGATCTCAAGACGATGACAGATAAGTTTTCTCTGTTCATCTCTGTGTT : 3177451 75 : lSerAlaCysPheLysAlaSerAsnLeuLeuLeuLysArgLysSerLeuValArgL : 93 !.!!!.!! !.!.|||!.!:!!||||||!!!|||:!!||| !!!!:!!:!!!.!: eGlyValSerLeuLysValAlaAsnLeuPheLeuGlnArgGlyArgIleIleAsnV 3177452 : CGGTGTCTCTCTGAAAGTAGCCAATTTATTCCTTCAACGGGGGAGGATTATAAACG : 3177508 94 : euLeuAsnValLeuIleSerThrThrCysLysTyrGlnAspAspAspGluLysMet : 111 !!:!!|||:!!|||:!:!!! !!.!|||! ::!|||!!:.!.||||||!!: alMetAsnIleLeuLeuThrGluAsnCysIleProArgAspGluGlnGluLysIle 3177509 : TGATGAACATTTTGCTGACGGAGAATTGCATCCCGAGGGACGAGCAAGAAAAGATA : 3177562 112 : IleGlnAspMetPheAspLysLysAlaArg : 121 |||||| ! ! !|||!!. ! |||||| IleGlnArgLysAsnAspAsnTyrAlaArg 3177563 : ATACAACGGAAGAACGATAATTACGCGAGG : 3177594 vulgar: NvOr81 0 121 . KQ414646.1 3177231 3177594 + 162 M 29 87 G 0 3 M 27 81 G 1 0 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3177232 3177594 162 + . gene_id 8 ; sequence NvOr81 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3177232 3177594 . + . KQ414646.1 exonerate:protein2genome:local exon 3177232 3177594 . + . insertions 3 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3177232 3177594 162 + . alignment_id 8 ; Query NvOr81 ; Align 3177232 1 87 ; Align 3177322 30 81 ; Align 3177403 58 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr81 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 256 -> 320 Target range: 3150616 -> 3150808 257 : IleAsnAspThrPheSerMetAlaLeuPheAlaGlnPhePheIleAlaAlaLeuVa : 275 !!:.!.!!:! !|||!!! ! !:!! !!.!|||.!!!!. ::!.!!||||| MetGlnGluLysPheArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuVa 3150617 : ATGCAAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGGT : 3150671 276 : lIleCysSerSerValTyrGluLeuSerLysIleValLeuLeuSerSerAspPheV : 294 |:!:|||! !! !:!!|||||||||:!!!!.! !! !:!!|||||| ! !:!: lValCysPheIleLeuTyrGluLeuAlaAsnThrProProIleSerSerLysTyrL 3150672 : AGTGTGTTTCATCCTGTACGAATTGGCGAACACGCCTCCAATCAGCTCCAAGTACC : 3150728 295 : alAlaLeuLeuSerTyrLeuSerCysMetLeuValGlnIlePheLeuTyrCysTrp : 312 !! !!!!:!! !||||||:!!||||||:!!..!|||||||||!!!||||||||| euGlnPheValLeuTyrLeuAlaCysMetMetThrGlnIlePhePheTyrCysTrp 3150729 : TGCAATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATCTTCTTTTACTGCTGG : 3150782 313 : TyrGlyThrAlaValThrMetLys : 320 |||||| ! !:!!! !:!!||| TyrGlyGluGlnLeuLysLeuLys 3150783 : TACGGCGAGCAGTTGAAACTGAAG : 3150808 vulgar: NvOr81 256 320 . KQ414646.1 3150616 3150808 + 135 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150617 3150808 135 + . gene_id 9 ; sequence NvOr81 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150617 3150808 . + . KQ414646.1 exonerate:protein2genome:local exon 3150617 3150808 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150617 3150808 135 + . alignment_id 9 ; Query NvOr81 ; Align 3150617 257 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr81 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 122 -> 208 Target range: 3153117 -> 3153375 123 : AsnThrValTrpTyrMetAlaLeuIleGlnSerSerValPheMetIleThrLeuGl : 141 |||.!! ! |||! !!!!:!:.!.! !! !||| !!:!::!! !:!! AsnAlaLysAlaTyrThrTyrPheLeuAspIleLeuValValValLeuTrpIleTh 3153118 : AACGCTAAGGCTTACACATATTTCCTGGACATCTTGGTAGTCGTTTTATGGATAAC : 3153172 142 : nSerIlePheIleAsnIleProGlnLysThrLeuProPheProAlaTrpLeuProT : 160 !||| !|||! :!! ! !:::::: ... ||| ..!|||||||||| rSerTyrPheThrAspTyrArgArgArgLysPheLysPheArgValTrpLeuProT 3153173 : ATCGTACTTCACGGACTACAGGcgcagaaaattcaaatttcgcgtCTGGTTACCTT : 3153229 161 : yrAsnTyrSerAsnThrArgLeuTyrAlaIleSerTyrThrHisGlnValIleGly : 178 ||:!! !!!!!.. !! !:!!!:!.!!:!:! !||| !!!.|||:!!:!! !! yrAspThrThrThrGlnProValPheThrLeuIleTyrCysGlnGlnIleValCys 3153230 : ACGACACTACTACACAACCTGTCTTCACTCTGATCTACTGTCAACAGATCGTCTGC : 3153283 179 : AsnAlaAlaSerAlaThrLeuHisAlaAlaAsnAspAlaLeuIleSerGlyIleMe : 197 !.. ! !|||!.!!.!:!!:!!!.! ! !|||..!|||.!!||||||:!:|| ThrTrpTyrSerValAsnIleAsnValIleCysAspCysLeuPheSerGlyLeuMe 3153284 : ACGTGGTACAGCGTGAATATTAACGTCATTTGCGACTGCCTGTTCAGCGGCCTGAT : 3153340 198 : tLeuGlnIleCysAlaGlnLeuGluIleLeuLys : 208 |:!!|||||||||:!! |||..!! :!!||| tIleGlnIleCysSerIleLeuArgLysMetLys 3153341 : GATACAGATTTGCTCAATCTTACGGAAGATGAAA : 3153375 vulgar: NvOr81 122 208 . KQ414646.1 3153117 3153375 + 114 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153118 3153375 114 + . gene_id 10 ; sequence NvOr81 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153118 3153375 . + . KQ414646.1 exonerate:protein2genome:local exon 3153118 3153375 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153118 3153375 114 + . alignment_id 10 ; Query NvOr81 ; Align 3153118 123 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr81 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 149 -> 211 Target range: 3160140 -> 3160329 150 : LysThrLeuProPheProAlaTrpLeuProTyrAsnTyrSerAsnThr<->ArgLe : 167 !:! !||||||.!!! !!.!|||||||||!:!:!!|||!!! !||| !!:! ArgGluLeuProLeuArgValTrpLeuProPheAspTyrArgAlaThrLeuGlyIl 3160141 : AGAGAGTTACCCCTTCGAGTATGGTTACCTTTCGATTATAGAGCCACATTGGGTAT : 3160195 168 : uTyrAlaIleSerTyrThrHisGlnValIleGlyAsnAlaAlaSerAlaThrLeuH : 186 !!:!::!:!!!!!|||.!!:!!||| !!:!! ! ! !! !.!!||| ! ePheSerLeuThrTyrAlaTyrGlnPheValThrLeuIlePheIleThrThrAlaI 3160196 : TTTCAGCCTTACCTACGCTTATCAGTTTGTAACTCTGATATTCATTACTACCGCGA : 3160252 187 : isAlaAlaAsnAspAlaLeuIleSerGlyIleMetLeuGlnIleCysAlaGlnLeu : 204 ! !!.!!.!||| !|||.!!||||||:!::!!:!!!!.|||! !..!|||!!! leMetGlyThrAspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPhe 3160253 : TTATGGGTACTGACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTC : 3160306 205 : GluIleLeuLysHisArgIle : 211 |||||||||:!!||||||:!: GluIleLeuGlnHisArgLeu 3160307 : GAGATACTCCAACATCGTCTG : 3160329 vulgar: NvOr81 149 211 . KQ414646.1 3160140 3160329 + 100 M 16 48 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160141 3160329 100 + . gene_id 11 ; sequence NvOr81 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160141 3160329 . + . KQ414646.1 exonerate:protein2genome:local exon 3160141 3160329 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160141 3160329 100 + . alignment_id 11 ; Query NvOr81 ; Align 3160141 150 48 ; Align 3160192 166 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr92 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 182 Query range: 120 -> 214 Target range: 3150032 -> 3150314 121 : ArgTyrValThrLeuSerSerLeuValLeuValGluIleThrAlaIleThrPheLe : 139 |||! ||||||:!!! !! ! !:!!|||||||||:!!|||!.!:!! !.!.:! ArgSerValThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCysMetIl 3150033 : AGGTCGGTGACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTGTATGAT : 3150087 140 : uIleProProPhePheGlnProGluAsnAsnArgThrLeuProPheLysIleTrpL : 158 !:!! !! !!!!..!! ! |||.!.||| !||| !!!:!!:! !|||| eLeuSerSerLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgAlaTrpL 3150088 : CCTCTCTTCGTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAGCCTGGC : 3150144 159 : euProTyrAspTyrSerMetAspLysLeuPheTrpIleThrTyrPheProGluSer : 176 |||||!:!|||||||||:!! ! ! !!:!!::|||.!!||| !!! !:!!! ! euProPheAspTyrSerLeuProThrTyrTyrTyrIleAlaTyrValHisGlnIle 3150145 : TGCCCTTCGATTACTCTCTGCCAACTTACTATTACATCGCGTACGTTCATCAGATC : 3150198 177 : IleThrIleIleLeuAlaSerLeuIleSerValSerSerAsnThrLeuIlePheGl : 195 :!!.!!:!:||| !.!!|||||| !:!|||:!!!!!:!!..!:!!|||! !|| ValAlaLeuIleGlyThrSerLeuSerAsnValAlaCysAspValIleIleCysGl 3150199 : GTCGCGCTGATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCATCTGCGG : 3150255 196 : yPheLeuIleGluAlaCysGlyGlnPheGluLeuLeuAsnHisArgPheMetThrM : 214 |!!.|||:!!.!.|||||||||||| |||:!!|||!!.||||||.!.! ! !| yLeuLeuValHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMetLysGluM 3150256 : GTTGCTCGTTCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATGAAGGAGA : 3150312 215 : et : 214 || et 3150313 : TG : 3150314 vulgar: NvOr92 120 214 . KQ414646.1 3150032 3150314 + 182 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150033 3150314 182 + . gene_id 1 ; sequence NvOr92 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150033 3150314 . + . KQ414646.1 exonerate:protein2genome:local exon 3150033 3150314 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150033 3150314 182 + . alignment_id 1 ; Query NvOr92 ; Align 3150033 121 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr92 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 173 Query range: 257 -> 385 Target range: 3164998 -> 3165533 258 : LysLysThrPheSerSerAlaIleIleGlyGlnTyrIleValSerSerLeuValIl : 276 !!.:!! !|||!.! ! !:!:|||..!|||!:! !:!!|||! !! !||||| AsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIl 3164999 : AACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGAT : 3165053 277 : eSerThrSerValTyrGlnLeuSerThrAsnThrThrMetAspValValPhePheT : 295 |!!! !!:!:!!|||!:!:!! |||.!.! !! !||||||... ||| eCysPheAsnLeuTyrArgMet---ThrGlnIleLysMetAspThrLysPheValG 3165054 : CTGCTTCAATCTTTACCGAATG---ACACAGATCAAAATGGAcacgaaattcgtcg : 3165107 296 : hrAsnLeuLeuTyrLeuMetCysMetLeuLeuGluPhePheLeuTyrCysTrpPhe : 313 :!!||||||! !.!.|||! :!! !:!!.!.|||! !|||||||||!:! luIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyr 3165108 : aaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTAC : 3165161 314 : GlyAsnGluLeuThrValLys >>>> Target Intron 1 >>>> SerGlu : 322 |||||||||:!!! ! !||| 80 bp ||| GlyAsnGluValLysHisLys++ ++SerLeu 3165162 : GGCAACGAAGTGAAACATAAGgt.........................agAGCCTC : 3165268 323 : AspPheGlyArgLysValPheArgThrAsnTrpLeuAlaLeuSerThrLysSerAs : 341 .!..!! ! !! !:!!|||!.!!:!:!!||| !:!!|||!:!!.!!!. !!. GlnLeuProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValTh 3165269 : CAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCAC : 3165325 342 : nLysAspIlePheValAlaMetLeuArgSerSerLysProIleIleValSerThrG : 360 !!:!! :!!!!.:!! !||| !|||:!! !!:!|||||| !!!!!!:! rArgAlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheThrSerI 3165326 : CAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTA : 3165382 361 : lyPhePheAlaValLeuSerLeuGluSerPheMetLys >>>> Target Intr : 373 ! ! !!!.! !:!!!:!||||||||||||||| ! 74 bp leHisValValSerValAsnLeuGluSerPheMetAla++ 3165383 : TTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt................ : 3165423 374 : on 2 >>>> IleIleLysLeuSerPheSerAlaPheAsnValLeuArg : 385 :!!|||||| !|||!:!||||||||||||:!!:!!!:! ++ValIleLysThrSerTyrSerAlaPheAsnMetIleGln 3165424 : .........agGTAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAA : 3165533 vulgar: NvOr92 257 385 . KQ414646.1 3164998 3165533 + 173 M 26 78 G 1 0 M 36 108 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164999 3165533 173 + . gene_id 2 ; sequence NvOr92 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3164999 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164999 3165184 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3165185 3165186 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165185 3165264 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3165263 3165264 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165265 3165420 . + . KQ414646.1 exonerate:protein2genome:local exon 3165265 3165420 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165421 3165422 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165421 3165494 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3165493 3165494 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165495 3165533 . + . KQ414646.1 exonerate:protein2genome:local exon 3165495 3165533 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164999 3165533 173 + . alignment_id 2 ; Query NvOr92 ; Align 3164999 258 78 ; Align 3165077 285 108 ; Align 3165265 321 156 ; Align 3165495 373 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr92 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 247 -> 320 Target range: 3178372 -> 3178591 248 : ThrPheIlePheGluPheValAspIlePheLysLysThrPheSerSerAlaIleIl : 266 ...|||||| ...|||..!.!.! ! !!.! ..!|||..!! ! !|||.! AsnPheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePh 3178373 : aatttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTT : 3178427 267 : eGlyGlnTyrIleValSerSerLeuValIleSerThrSerValTyrGlnLeuSerT : 285 ! !|||!:! !:!!|||||| !|||:!:!!! !|||:!!|||:!!:!!|||| eLeuGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerT 3178428 : CCTGCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGA : 3178484 286 : hrAsnThrThrMetAspValValPhePheThrAsnLeuLeuTyrLeuMetCysMet : 303 ||! !!.! !!.!...!:!! !||| !! ! ! !! !|||||| |||||| hrIleAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMet 3178485 : CGATTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATG : 3178538 304 : LeuLeuGluPhePheLeuTyrCysTrpPheGlyAsnGluLeuThrValLys : 320 ||| !:!! ! !:!||||||||||||||||||||||||:!!|||:!!||| LeuThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys 3178539 : CTCACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: NvOr92 247 320 . KQ414646.1 3178372 3178591 + 148 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178373 3178591 148 + . gene_id 3 ; sequence NvOr92 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178373 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178373 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178373 3178591 148 + . alignment_id 3 ; Query NvOr92 ; Align 3178373 248 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr92 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 118 -> 223 Target range: 3164310 -> 3164625 119 : PheIleArgTyrValThrLeuSerSerLeuValLeuValGluIleThrAlaIleTh : 137 |||.!!|||!:: !|||:!!.!!! !! ! !|||:!! !||| !|||.!! PhePheArgTrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleCysAlaPheTr 3164311 : TTTTTTAGATGGAACACGATTGGCTACTGGAGTTTACTATTAATTTGTGCGTTCTG : 3164365 138 : rPheLeuIleProProPhePheGlnProGluAsnAsnArgThrLeuProPheLysI : 156 !.!.! !:!: ! !!.!!!!. ! ! !:!!:!|||! !||| !|||::! pIleTyrValArgSerLeuLeuThrAspPheSerSerArgLysLeuMetPheArgA 3164366 : GATATACGTGAGATCGCTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAG : 3164422 157 : leTrpLeuProTyrAspTyrSerMetAspLysLeuPheTrpIleThrTyrPhePro : 174 !||||||||||||||||||||| ! :!!||| :!!|||!:! !!! ! laTrpLeuProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHis 3164423 : CATGGTTACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCAT : 3164476 175 : GluSerIleThrIleIleLeuAlaSerLeuIleSerValSerSerAsnThrLeuIl : 193 :!!:!!|||.!! ! :!!..!!!! ! ||||||!!! !:!!:!!||| GlnAlaIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTy 3164477 : CAAGCTATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATA : 3164533 194 : ePheGlyPheLeuIleGluAlaCysGlyGlnPheGluLeuLeuAsnHisArgPheM : 212 ! !|||!!.||||||.!. !! ! !!|||||||||:!!|||.!.||||||.!.! rThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuA 3164534 : CACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAA : 3164590 213 : etThrMetProLeuTyrIleGluAspPheAlaLys : 223 !!.!:!: ! ! ! !!:|||! !!.!||| rgAsnValLysThrGluGlnAspAspSerValLys 3164591 : GGAACGTTAAAACTGAGCAGGATGACTCTGTGAAG : 3164625 vulgar: NvOr92 118 223 . KQ414646.1 3164310 3164625 + 140 M 105 315 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164311 3164625 140 + . gene_id 4 ; sequence NvOr92 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164311 3164625 . + . KQ414646.1 exonerate:protein2genome:local exon 3164311 3164625 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164311 3164625 140 + . alignment_id 4 ; Query NvOr92 ; Align 3164311 119 315 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr92 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 118 -> 223 Target range: 3157782 -> 3158097 119 : PheIleArgTyrValThrLeuSerSerLeuValLeuValGluIleThrAlaIleTh : 137 |||.!!|||!:: !|||:!!.!!! !! ! |||::: |||:::..!.!! PhePheArgTrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePh 3157783 : TTTTTTAGATGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTT : 3157837 138 : rPheLeuIleProProPhePheGlnProGluAsnAsnArgThrLeuProPheLysI : 156 !.!.! !:!: ! !!.!!!!. ! ! !:!||||||! !||| !|||::! eIleTyrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgA 3157838 : TATATACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAG : 3157894 157 : leTrpLeuProTyrAspTyrSerMetAspLysLeuPheTrpIleThrTyrPhePro : 174 !|||:!!||||||||||||||| ! :!!||| :!!|||! ! !!! ! laTrpIleProTyrAspTyrSerProAlaProIlePheIleLeuThrSerValHis 3157895 : CATGGATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTCCGTCCAT : 3157948 175 : GluSerIleThrIleIleLeuAlaSerLeuIleSerValSerSerAsnThrLeuIl : 193 :!!:!!|||.!! ! :!!..!!!! ! !!!|||!!! !:!!|||||| GlnAlaIleAlaSerThrIleCysCysThrSerThrValThrValAspThrLeuTy 3157949 : CAAGCTATAGCCTCGACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTATA : 3158005 194 : ePheGlyPheLeuIleGluAlaCysGlyGlnPheGluLeuLeuAsnHisArgPheM : 212 ! !|||!!.||||||.!. !! ! !!|||||||||:!!|||.!.||||||.!.! rThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuA 3158006 : CACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAA : 3158062 213 : etThrMetProLeuTyrIleGluAspPheAlaLys : 223 !!.!:!: ! ! ! !!:|||! !!.!||| rgAsnValLysThrGluGlnAspAspSerValLys 3158063 : GGAACGTTAAAACTGAGCAGGATGACTCTGTGAAG : 3158097 vulgar: NvOr92 118 223 . KQ414646.1 3157782 3158097 + 134 M 105 315 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157783 3158097 134 + . gene_id 5 ; sequence NvOr92 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3157783 3158097 . + . KQ414646.1 exonerate:protein2genome:local exon 3157783 3158097 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157783 3158097 134 + . alignment_id 5 ; Query NvOr92 ; Align 3157783 119 315 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr92 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 251 -> 324 Target range: 3155805 -> 3156024 252 : GluPheValAspIlePheLysLysThrPheSerSerAlaIleIleGlyGlnTyrIl : 270 ..!|||..!! !!!:.!.!!.:!! !|||..!! !||||||.!! !|||!:! ArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAl 3155806 : AGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGC : 3155860 271 : eValSerSerLeuValIleSerThrSerValTyrGlnLeuSerThrAsnThrThrM : 289 ||||||!!!|||!.!|||!!! !!:!:!!|||! !|||!!! !::: !..!! aValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValT 3155861 : GGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGA : 3155917 290 : etAspValValPhePheThrAsnLeuLeuTyrLeuMetCysMetLeuLeuGluPhe : 307 ! :!! !!:! ! !! :!!:!!||| !! ||||||||| !:!!.!. hrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIle 3155918 : CGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATA : 3155971 308 : PheLeuTyrCysTrpPheGlyAsnGluLeuThrValLysSerGluAspPhe : 324 |||:!!|||||||||!:!|||||||||:!!! !:!!||| !... !!||| PheIleTyrCysTrpTyrGlyAsnGluValLysLeuLysValSerTyrPhe 3155972 : TTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAGGTTTCTTATTTT : 3156024 vulgar: NvOr92 251 324 . KQ414646.1 3155805 3156024 + 132 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155806 3156024 132 + . gene_id 6 ; sequence NvOr92 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155806 3156024 . + . KQ414646.1 exonerate:protein2genome:local exon 3155806 3156024 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155806 3156024 132 + . alignment_id 6 ; Query NvOr92 ; Align 3155806 252 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr92 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 257 -> 373 Target range: 3158470 -> 3158895 258 : LysLysThrPheSerSerAlaIleIleGlyGlnTyrIleValSerSerLeuValIl : 276 !!.:!! !|||!.! ! !:!:|||..!|||!:! !:!!|||! !! !||||| AsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIl 3158471 : AACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGAT : 3158525 277 : eSerThrSerValTyrGlnLeuSerThrAsnThrThrMetAspValValPhePheT : 295 |!!! !!:!:!!|||!:!:!! |||.!.! !! !||||||... ||| eCysPheAsnLeuTyrArgMet---ThrGlnIleLysMetAspThrLysPheValG 3158526 : CTGCTTCAATCTTTACCGAATG---ACACAGATCAAAATGGAcacgaaattcgtcg : 3158579 296 : hrAsnLeuLeuTyrLeuMetCysMetLeuLeuGluPhePheLeuTyrCysTrpPhe : 313 :!!||||||! !.!.|||! :!! !:!!.!.|||! !|||||||||!:! luIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyr 3158580 : aaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGTTGGTAC : 3158633 314 : GlyAsnGluLeuThrValLysSerGluAsp{P} >>>> Target Intron 1 : 324 |||||||||:!!! !! !||| !!!: !!{|} 80 bp GlyAsnGluValLysAspLysValAspHis{P}++ 3158634 : GGCAACGAAGTGAAAGATAAGGTTGATCAT{T}gt..................... : 3158669 325 : >>>> {he}GlyArgLysValPheArgThrAsnTrpLeuAlaLeuSerThrLysS : 340 {||} ! !! !:!!|||!.!!:!:!!||| !:!!|||!:!!.!!!. +-{he}ProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnV 3158670 : ....ac{TT}CCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACG : 3158794 341 : erAsnLysAspIlePheValAlaMetLeuArgSerSerLysProIleIleValSer : 358 !!.!!:!! :!!!!.:!! !||| !|||:!! !!:!|||||| !!!!! alThrArgAlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheThr 3158795 : TCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACC : 3158848 359 : ThrGlyPhePheAlaValLeuSerLeuGluSerPheMetLysIle : 373 !:! ! ! !!!.! !:!!!:!||||||||||||||| !:!! SerIleHisValValSerValAsnLeuGluSerPheMetAlaVal 3158849 : AGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAGTC : 3158895 vulgar: NvOr92 257 373 . KQ414646.1 3158470 3158895 + 128 M 26 78 G 1 0 M 39 117 S 0 1 5 0 2 I 0 76 3 0 2 S 1 2 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158471 3158895 128 + . gene_id 7 ; sequence NvOr92 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3158471 3158666 . + . KQ414646.1 exonerate:protein2genome:local exon 3158471 3158666 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3158667 3158668 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3158667 3158746 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3158745 3158746 . + . intron_id 0 ; splice_site "AC" KQ414646.1 exonerate:protein2genome:local cds 3158747 3158895 . + . KQ414646.1 exonerate:protein2genome:local exon 3158747 3158895 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3158471 3158895 128 + . alignment_id 7 ; Query NvOr92 ; Align 3158471 258 78 ; Align 3158549 285 117 ; Align 3158749 325 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr92 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 128 -> 214 Target range: 3180071 -> 3180329 129 : ValLeuValGluIleThrAlaIleThrPheLeuIleProProPhePheGlnProGl : 147 :!!:!!||||||!!::!!!.! !:!! !:!!:!! ! !!!!. ! ! MetValValGluMetSerValAlaSerThrIleLeuAsnSerLeuValThrAsnPh 3180072 : ATGGTAGTCGAGATGTCGGTCGCCTCGACTATTTTAAACTCGTTAGTGACCAACTT : 3180126 148 : uAsnAsnArgThrLeuProPheLysIleTrpLeuProTyrAspTyrSerMetAspL : 166 .!.:!! !!! !||| !!!:!!:! !|||!!!||||||||||||!!!! ! ! eGlnHisGlyArgLeuThrTyrArgGlyTrpPheProTyrAspTyrThrThrAlaV 3180127 : TCAACACGGCAGACTAACCTACAGAGGCTGGTTCCCTTACGATTACACGACCGCCG : 3180183 167 : ysLeuPheTrpIleThrTyrPheProGluSerIleThrIleIleLeuAlaSerLeu : 184 !|||||| :!:|||||| !! !:!! !:!! !:!::!!:!! !|||! ! alLeuPheProLeuThrTyrAlaLeuGlnLeuLeuCysValLeuValTyrSerTrp 3180184 : TACTTTTTCCATTGACATACGCTCTGCAGCTATTATGCGTGCTCGTATATTCCTGG : 3180237 185 : IleSerValSerSerAsnThrLeuIlePheGlyPheLeuIleGluAlaCysGlyGl : 203 ||| !|||||| !:!!! !|||.!!||||||.!.|||!!::!! !||| !!|| IleHisValSerValAspIleLeuPhePheGlyLeuLeuMetGlnLeuCysCysGl 3180238 : ATCCACGTTTCAGTGGATATTCTCTTCTTCGGACTGTTGATGCAACTGTGCTGTCA : 3180294 204 : nPheGluLeuLeuAsnHisArgPheMetThrMet : 214 ||||!!::::||| ||||||! !:!!!: nPheAspIleLeuPheSerArgPheSerSerIle 3180295 : ATTCGAcattctcttctctcgtttcAGTAGCATA : 3180329 vulgar: NvOr92 128 214 . KQ414646.1 3180071 3180329 + 127 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180072 3180329 127 + . gene_id 8 ; sequence NvOr92 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180072 3180329 . + . KQ414646.1 exonerate:protein2genome:local exon 3180072 3180329 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180072 3180329 127 + . alignment_id 8 ; Query NvOr92 ; Align 3180072 129 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr92 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 248 -> 320 Target range: 3180451 -> 3180667 249 : PheIlePheGluPheValAspIlePheLysLysThrPheSerSerAlaIleIleGl : 267 ||| !! !...!!.!.!!!:|||.!.!!. ! !:!.!...! !.!!!!:.!!!. PheCysCysSerLeuAlaGluIleMetAsnAspSerLeuGlnLeuThrMetPheAl 3180452 : TTCTGTTGCAGTTTAGCTGAAATAATGAACGACAGTCTACAGCTGACGATGTTCGC : 3180506 268 : yGlnTyrIleValSerSerLeuValIleSerThrSerValTyrGlnLeuSerThrA : 286 !|||!:!.!!! !|||! !:!!||||||!!! !|||:!! !||||||! !!.! aGlnPhePheGlySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnA 3180507 : CCAGTTTTTCGGAAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACG : 3180563 287 : snThrThrMetAspValValPhePheThrAsnLeuLeuTyrLeuMetCysMetLeu : 304 !! !:!:..!..!! !|||!!..!!!..:::...|||||| :::||| laAspIleLeuSerThrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeu 3180564 : CAGATATTCTCAGCACCGAATTCTTAGCGACGAtattttatctgagctcgatACTG : 3180617 305 : LeuGluPhePheLeuTyrCysTrpPheGlyAsnGluLeuThrValLys : 320 |||:!! !|||||||||||||||!:!|||||||||:!!! !..!||| LeuGlnSerPheLeuTyrCysTrpTyrGlyAsnGluValArgThrLys 3180618 : CTGCAGAGCTTTCTTTACTGTTGGTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: NvOr92 248 320 . KQ414646.1 3180451 3180667 + 118 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180452 3180667 118 + . gene_id 9 ; sequence NvOr92 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180452 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180452 3180667 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180452 3180667 118 + . alignment_id 9 ; Query NvOr92 ; Align 3180452 249 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr92 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 149 -> 234 Target range: 3160140 -> 3160398 150 : ArgThrLeuProPheLysIleTrpLeuProTyrAspTyrSerMetAsp<->LysLe : 167 ||| !||||||.!!::!:!!|||||||||!:!||||||!!! :! ArgGluLeuProLeuArgValTrpLeuProPheAspTyrArgAlaThrLeuGlyIl 3160141 : AGAGAGTTACCCCTTCGAGTATGGTTACCTTTCGATTATAGAGCCACATTGGGTAT : 3160195 168 : uPheTrpIleThrTyrPheProGluSerIleThrIleIleLeuAlaSerLeuIleS : 186 !||| ! :!!|||||| ! !:!!! !:!!|||:!:|||!!! !!!! ! ! ePheSerLeuThrTyrAlaTyrGlnPheValThrLeuIlePheIleThrThrAlaI 3160196 : TTTCAGCCTTACCTACGCTTATCAGTTTGTAACTCTGATATTCATTACTACCGCGA : 3160252 187 : erValSerSerAsnThrLeuIlePheGlyPheLeuIleGluAlaCysGlyGlnPhe : 204 !:!!.!!!!!:!!!.!|||.!! !|||.!.||||||.!. !! ! !!|||||| leMetGlyThrAspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPhe 3160253 : TTATGGGTACTGACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTC : 3160306 205 : GluLeuLeuAsnHisArgPheMetThrMetProLeuTyrIleGluAspPheAlaLy : 223 |||:!!|||.!.||||||.!.! !!:!!!: !! ! !!! ||| !!! !||||| GluIleLeuGlnHisArgLeuLysSerIleLysProAspArgGluTyrSerAlaLy 3160307 : GAGATACTCCAACATCGTCTGAAGAGCATTAAACCTGACAGGGAGTACTCTGCGAA : 3160363 224 : sGlyGluLysIleThrThrTyrGluValCysLys : 234 | ! .!! ! !|||...:!!! !||| sGlnCysAlaPheHisHisTyrArgIleTyrLys 3160364 : ACAGTGTGCTTTTCATCATTATCGCATATACAAG : 3160398 vulgar: NvOr92 149 234 . KQ414646.1 3160140 3160398 + 109 M 16 48 G 0 3 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160141 3160398 109 + . gene_id 10 ; sequence NvOr92 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160141 3160398 . + . KQ414646.1 exonerate:protein2genome:local exon 3160141 3160398 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160141 3160398 109 + . alignment_id 10 ; Query NvOr92 ; Align 3160141 150 48 ; Align 3160192 166 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr88 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 322 -> 380 Target range: 3178743 -> 3178917 323 : GluSerLeuAsnPheGlnArgSerIleTyrGluIleAspTrpThrThrLeuSerTh : 341 :!!||| !!!. ! ..!:!!|||||||||!!:|||||||||.!!||| !!|| GlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuProTh 3178744 : CAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCCCAC : 3178798 342 : rAsnAlaGlyLysAspLeuValPheIleMetMetArgAlaSerLysProIleLeuM : 360 |:!! ! !!|||||||||:!!.!.|||||| !|||:!!!.!::!|||:!! !| rAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValLysM 3178799 : CGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTAAAA : 3178855 361 : etTyrCysGlyHisPheValValLeuSerLeuGluSerTyrValGlyIleLeuLys : 378 || !!|||||| !!|||||||||||| !||||||!:!:!!..!:!! !!:! etThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerValSerArg 3178856 : TGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTTAGTAGA : 3178909 379 : ValSer : 380 :!!||| IleSer 3178910 : ATTTCC : 3178917 vulgar: NvOr88 322 380 . KQ414646.1 3178743 3178917 + 139 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178744 3178917 139 + . gene_id 1 ; sequence NvOr88 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178744 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178744 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178744 3178917 139 + . alignment_id 1 ; Query NvOr88 ; Align 3178744 323 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr88 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 147 -> 224 Target range: 3160122 -> 3160356 148 : PheThrThrMetAsnThrArgThrLeuProMetArgIleTrpLeuProTyrLysMe : 166 .!.|||.!!.!.!..! !||| !||||||:!:|||:!!|||||||||!:! ! MetThrAlaPheArgIleArgGluLeuProLeuArgValTrpLeuProPheAspTy 3160123 : ATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGGTTACCTTTCGATTA : 3160177 167 : tAspLeuAsnIle<->IlePheTrpLeuThrPheIleGlnGlnSerValGlyValI : 184 !!..:!: |||||| ! ||||||!:! ! ! |||! !||| !:!!| rArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGlnPheValThrLeuI 3160178 : TAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAGTTTGTAACTCTGA : 3160234 185 : lePheValGlyTyrCysIleIleSerThrThrLeuMetIleAsnGlyPheMetTyr : 202 |||||:!! ! !...|||!!:.!!||| ! !:!:.!!!:!|||.!.:!! ! lePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheSerGlyLeuLeuIle 3160235 : TATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCAGCGGACTGTTGATC : 3160288 203 : HisValCysCysGlnPheArgIleLeuSerCysArgPheLysLysLeuProGlnVa : 221 |||:!!! !|||||||||..!||||||..! !|||.!.|||!..:!! !! ! HisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysSerIleLysProAs 3160289 : CACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGAGCATTAAACCTGA : 3160345 222 : lIleAspTyr : 224 !! !!:||| pArgGluTyr 3160346 : CAGGGAGTAC : 3160356 vulgar: NvOr88 147 224 . KQ414646.1 3160122 3160356 + 128 M 23 69 G 0 3 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160123 3160356 128 + . gene_id 2 ; sequence NvOr88 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160123 3160356 . + . KQ414646.1 exonerate:protein2genome:local exon 3160123 3160356 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160123 3160356 128 + . alignment_id 2 ; Query NvOr88 ; Align 3160123 148 69 ; Align 3160195 171 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr86 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 260 Query range: 244 -> 373 Target range: 3178375 -> 3178917 245 : TyrIlePheArgValAlaAspThrIleAsnAspIlePheLysSerValIlePheGl : 263 :::||| ||| !!.!!.!.|||:!:||| !:!:|||:!!! !:!!||||||! PheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLe 3178376 : ttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCT : 3178430 264 : nGlnPheCysIleSerSerIleValValSerAlaSerIlePheGlnLeuSerThrA : 282 !||||||! !|||||||||! |||:!!!!! !||||||!:!:!!:!!||||||! uGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrI 3178431 : GCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGA : 3178487 283 : rgProAspLysAspMetGluPheIleMetValPheCysTyrLeuIleCysValLeu : 300 ! ! ..!|||.!.|||:!! ! ! !! !|||||| !|||:!!||| leAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeu 3178488 : TTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTC : 3178541 301 : ValGluPheLeuIleTyrSerTrpPheGlyAsnGluLeuMetLeuGlu >>>> T : 317 ..!:!! ! ! !:!!|||!!!|||||||||||||||:!!! !|||:!! ThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys++ 3178542 : ACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAGgt...... : 3178594 318 : arget Intron 1 >>>> SerLeuHisPheGlnThrSerValTyrGlnIleAs : 328 155 bp ||| ! ! ! !:!!:!!|||:!!!!:|| ++SerGluLysValGlyGluAlaIleTyrGluMetAs 3178595 : ...................agAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGA : 3178780 329 : pTrpThrAlaLeuSerIleGlySerGlyLysAspLeuValPheIleMetMetArgA : 347 ||||||||||||| !!! !! !! ! !!|||||||||:!!.!.|||||| !|||: pTrpThrAlaLeuProThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgS 3178781 : CTGGACGGCACTTCCCACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGAT : 3178837 348 : laSerLysProValIleMetTyrCysGlyHisPheIleIleLeuSerLeuGluSer : 365 !!!.!::!||||||! !||| !!|||||| !!:!!:!!|||||| !|||||| erLysArgProValLysMetThrSerGlyHisValValValLeuSerAlaGluSer 3178838 : CAAAACGACCTGTTAAAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCA : 3178891 366 : TyrLeuGlyIleLeuLysAlaSer : 373 !:!:!!..!:!! !!:! !||| PheMetSerValSerArgIleSer 3178892 : TTTATGTCTGTTAGTAGAATTTCC : 3178917 vulgar: NvOr86 244 373 . KQ414646.1 3178375 3178917 + 260 M 72 216 5 0 2 I 0 151 3 0 2 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178376 3178917 260 + . gene_id 1 ; sequence NvOr86 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3178376 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178376 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178592 3178593 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3178592 3178746 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3178745 3178746 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3178747 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178747 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178376 3178917 260 + . alignment_id 1 ; Query NvOr86 ; Align 3178376 245 216 ; Align 3178747 317 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr86 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 125 -> 211 Target range: 3180071 -> 3180329 126 : ValLeuValAsnIleThrMetMetAsnLeuLeuValLeuProLeuValThrAsnGl : 144 :!!:!!|||.!.!!::!!:!: ::: !:!!:!! ! !!|||||||||||| MetValValGluMetSerValAlaSerThrIleLeuAsnSerLeuValThrAsnPh 3180072 : ATGGTAGTCGAGATGTCGGTCGCCTCGACTATTTTAAACTCGTTAGTGACCAACTT : 3180126 145 : yGluAsnArgThrLeuProMetAsnValTrpLeuProTyrProValAspSerAspA : 163 !:!!:!! !!! !||| !! !..! !|||!!!|||||| ! ! !!!! !! eGlnHisGlyArgLeuThrTyrArgGlyTrpPheProTyrAspTyrThrThrAlaV 3180127 : TCAACACGGCAGACTAACCTACAGAGGCTGGTTCCCTTACGATTACACGACCGCCG : 3180183 164 : laSerTyrTrpLeuThrTyrThrHisGlnThrLeuGlyThrLeuLeuLeuGlyThr : 181 .! !!:! |||||||||.!!! ||| !||| !!..!|||:!!! !..! ! alLeuPheProLeuThrTyrAlaLeuGlnLeuLeuCysValLeuValTyrSerTrp 3180184 : TACTTTTTCCATTGACATACGCTCTGCAGCTATTATGCGTGCTCGTATATTCCTGG : 3180237 182 : GlyAlaValGlySerThrLeuMetIleAsnGlyPheMetHisGlnValCysCysGl : 200 ! !|||..! ! !:!!:!:.!! !|||.!.:!! |||:!!|||||||| IleHisValSerValAspIleLeuPhePheGlyLeuLeuMetGlnLeuCysCysGl 3180238 : ATCCACGTTTCAGTGGATATTCTCTTCTTCGGACTGTTGATGCAACTGTGCTGTCA : 3180294 201 : nPheGluIleLeuSerSerArgPheGlnLysLeu : 211 ||||!!:|||||| |||||||||...!..:!! nPheAspIleLeuPheSerArgPheSerSerIle 3180295 : ATTCGAcattctcttctctcgtttcAGTAGCATA : 3180329 vulgar: NvOr86 125 211 . KQ414646.1 3180071 3180329 + 122 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180072 3180329 122 + . gene_id 2 ; sequence NvOr86 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180072 3180329 . + . KQ414646.1 exonerate:protein2genome:local exon 3180072 3180329 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180072 3180329 122 + . alignment_id 2 ; Query NvOr86 ; Align 3180072 126 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr86 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 120 -> 211 Target range: 3164325 -> 3164598 121 : ThrLeuValCysPheValLeuValAsnIleThrMetMetAsnLeuLeuValLeuPr : 139 |||:!!! !! !!:: !|||:!! ||| ! !.!. :!!! !||| ! ! ThrIleGlyTyrTrpSerLeuLeuLeuIleCysAlaPheTrpIleTyrValArgSe 3164326 : ACGATTGGCTACTGGAGTTTACTATTAATTTGTGCGTTCTGGATATACGTGAGATC : 3164380 140 : oLeuValThrAsnGlyGluAsnArgThrLeuProMetAsnValTrpLeuProTyrP : 158 !|||:!!|||:!! !...!:!|||! !||| !.!....!.!|||||||||||| rLeuLeuThrAspPheSerSerArgLysLeuMetPheArgAlaTrpLeuProTyrA 3164381 : GCTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGCATGGTTACCCTACG : 3164437 159 : roValAspSerAspAlaSerTyrTrpLeuThrTyrThrHisGlnThrLeuGlyThr : 176 ! !..! !!! !!! !!:! ||||||!:!..!||||||.!!:!!!.!.!! spTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAlaIleAlaAla 3164438 : ATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCG : 3164491 177 : LeuLeuLeuGlyThrGlyAlaValGlySerThrLeuMetIleAsnGlyPheMetHi : 195 !:!!! ! !!|||..!::!||| ! ! !! !:!: !!.!|||!!.:!! ThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLeuIl 3164492 : ACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTGAT : 3164548 196 : sGlnValCysCysGlnPheGluIleLeuSerSerArgPheGlnLysLeu : 211 !.!.:!!! !||||||||||||||||||..! !|||.!.::!!!.:!! eAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnVal 3164549 : TAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTT : 3164598 vulgar: NvOr86 120 211 . KQ414646.1 3164325 3164598 + 112 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164326 3164598 112 + . gene_id 3 ; sequence NvOr86 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164326 3164598 . + . KQ414646.1 exonerate:protein2genome:local exon 3164326 3164598 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164326 3164598 112 + . alignment_id 3 ; Query NvOr86 ; Align 3164326 121 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr86 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 120 -> 211 Target range: 3157797 -> 3158070 121 : ThrLeuValCysPheValLeuValAsnIleThrMetMetAsnLeuLeuValLeuPr : 139 |||:!!! !! !!:: |||::: |||::: !.!. !:!!! !||| ! ! ThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrValArgSe 3157798 : ACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATATACGTGAGATC : 3157852 140 : oLeuValThrAsnGlyGluAsnArgThrLeuProMetAsnValTrpLeuProTyrP : 158 !|||:!!! !:!! !...||||||! !||| !.!....!.!|||:!!|||||| rLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrA 3157853 : GCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACG : 3157909 159 : roValAspSerAspAlaSerTyrTrpLeuThrTyrThrHisGlnThrLeuGlyThr : 176 ! !..! !!! !!! !!:! ||||||! !..!||||||.!!:!!!.!:!! spTyrSerProAlaProIlePheIleLeuThrSerValHisGlnAlaIleAlaSer 3157910 : ATTACTCCCCTGCGCCCATTTTTATCCTTACCTCCGTCCATCAAGCTATAGCCTCG : 3157963 177 : LeuLeuLeuGlyThrGlyAlaValGlySerThrLeuMetIleAsnGlyPheMetHi : 195 !:!!! ! !!|||..!.!!||| ! ! ! !:!: !!.!|||!!.:!! ThrIleCysCysThrSerThrValThrValAspThrLeuTyrThrGlyLeuLeuIl 3157964 : ACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTATACACTGGCTTGTTGAT : 3158020 196 : sGlnValCysCysGlnPheGluIleLeuSerSerArgPheGlnLysLeu : 211 !.!.:!!! !||||||||||||||||||..! !|||.!.::!!!.:!! eAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnVal 3158021 : TAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTT : 3158070 vulgar: NvOr86 120 211 . KQ414646.1 3157797 3158070 + 108 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157798 3158070 108 + . gene_id 4 ; sequence NvOr86 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3157798 3158070 . + . KQ414646.1 exonerate:protein2genome:local exon 3157798 3158070 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157798 3158070 108 + . alignment_id 4 ; Query NvOr86 ; Align 3157798 121 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr86 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 117 -> 211 Target range: 3160053 -> 3160338 118 : ArgValLeuThrLeuValCysPheValLeuValAsnIleThrMetMetAsnLeuLe : 136 ||| !|||:!!:!!!.!! ! |||! !..! :!:!:! !! ..!:!!! ArgLysLeuSerMetAlaTyrThrValCysThrValLeuSerAlaThrGlyValTr 3160054 : AGAAAGCTCTCGATGGCCTATACGGTTTGTACAGTACTGAGCGCGACTGGTGTATG : 3160108 137 : uValLeuProLeuValThrAsnGlyGluAsnArgThrLeuProMetAsnValTrpL : 155 !:!!||| !! !:!!||| !..!! !||| !||||||:!:...||||||| pMetLeuSerAlaMetThrAlaPheArgIleArgGluLeuProLeuArgValTrpL 3160109 : GATGTTGTCGGCCATGACGGCATTCAGGATCAGAGAGTTACCCCTTCGAGTATGGT : 3160165 156 : euProTyrProValAspSerAspAlaSer<->TyrTrpLeuThrTyrThrHisGln : 172 |||||!:! ! ! :!! !.!! !:! ! |||||||||.!!:!!||| euProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThrTyrAlaTyrGln 3160166 : TACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACCTACGCTTATCAG : 3160219 173 : ThrLeuGlyThrLeuLeuLeuGlyThrGlyAlaValGlySerThrLeuMetIleAs : 191 !:!! ! !:!!!!!:!! !|||!.! !:!!|||!!! ! !:!:.!!!: PheValThrLeuIlePheIleThrThrAlaIleMetGlyThrAspAsnLeuPheSe 3160220 : TTTGTAACTCTGATATTCATTACTACCGCGATTATGGGTACTGACAATCTATTCAG : 3160276 192 : nGlyPheMetHisGlnValCysCysGlnPheGluIleLeuSerSerArgPheGlnL : 210 !|||.!.:!! !!!.:!!! !||||||||||||||||||..! !|||.!.:!!! rGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnHisArgLeuLysS 3160277 : CGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAACATCGTCTGAAGA : 3160333 211 : ysLeu : 211 ..:!! erIle 3160334 : GCATT : 3160338 vulgar: NvOr86 117 211 . KQ414646.1 3160053 3160338 + 108 M 47 141 G 0 3 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160054 3160338 108 + . gene_id 5 ; sequence NvOr86 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160054 3160338 . + . KQ414646.1 exonerate:protein2genome:local exon 3160054 3160338 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160054 3160338 108 + . alignment_id 5 ; Query NvOr86 ; Align 3160054 118 141 ; Align 3160198 165 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr86 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 316 -> 382 Target range: 3156085 -> 3156416 317 : SerLeuHisPheGlnThrSerValTyrGlnIleAspTrpThrAlaLeuSerIleGl : 335 ||||||.!..!!...!.!! !:!!!:!!!.:!!||||||||| !!!!!..!! !!. SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 3156086 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 3156140 336 : ySerGlyLysAspLeuValPheIleMetMetArgAlaSerLysProValIleMetT : 354 !!!! !::!:!!:!!:!! !!!:|||||||||||||||..!|||:!! !!!: aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 3156141 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 3156197 355 : yrCysGlyHisPheIleIleLeuSerLeuGluSerTyrLeuGly >>>> Targe : 369 ! !!! !!.! ! :!! !:!!!:!|||!!:|||!:!:!!!.! leSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 3156198 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.......... : 3156244 370 : t Intron 1 >>>> IleLeuLysAlaSerTyrSerValPheAsnIleLeuArg : 381 133 bp :!:||||||.!!|||||||||!.!!:!|||:!!|||!:! ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGln 3156245 : ...............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAA : 3156411 382 : Arg : 382 ||| Arg 3156412 : CGC : 3156416 vulgar: NvOr86 316 382 . KQ414646.1 3156085 3156416 + 103 M 52 156 5 0 2 I 0 129 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3156086 3156416 103 + . gene_id 6 ; sequence NvOr86 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3156086 3156241 . + . KQ414646.1 exonerate:protein2genome:local exon 3156086 3156241 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156242 3156243 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156242 3156374 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3156373 3156374 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156375 3156416 . + . KQ414646.1 exonerate:protein2genome:local exon 3156375 3156416 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3156086 3156416 103 + . alignment_id 6 ; Query NvOr86 ; Align 3156086 317 156 ; Align 3156375 369 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr80 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 310 Query range: 148 -> 320 Target range: 3177988 -> 3178591 149 : GluAspArgValLeuProTyrArgAlaTrpArgProTyrSerLeuAspAsnValAs : 167 .....!!:!..!|||||| !! !||| !||||||..!|||..!::: !!! ArgSerLysThrLeuProIleSerAspTrpValProTyrAspLeuSerSerGlnLy 3177989 : CGCTCCAAGACTTTGCCAATATCCGACTGGGTGCCTTACGATTTGTCCTCGCAAAA : 3178043 168 : nTyrTyrTyrLeuAlaTyrLeuHisGlnSerTrpSerValThrIleAlaAlaThrG : 186 .! ||| :!!:!! |||||||||!!! .!!:!!! !:!!..!|||!.! sLeuTyrThrIleSerLeuLeuHisGlnThrIleGlyLeuMetValCysAlaAsnT 3178044 : ATTGTACACGATATCTCTGTTGCATCAAACGATAGGCCTGATGGTCTGTGCGAACA : 3178100 187 : lyAsnAlaAlaThrGluThrLeuValSerGlyPheMetIleGlnIleCysAlaGln : 204 !!:!!.!|||!.!|||||||||:!!:!!|||.!.||||||||| ! !!|||||| hrSerValAlaAsnGluThrLeuIleAlaGlyLeuMetIleGlnAlaGlyAlaGln 3178101 : CCAGCGTGGCAAACGAAACACTTATCGCAGGGCTGATGATACAAGCTGGCGCGCAA : 3178154 205 : PheGluIleLeuGluHisArgPheMetGlnLeuProLysIleLeuLysGluMetAr : 223 |||||||||!!! |||||| ! .!.||| !! :!!||| !!!:! || PheGluIlePheCysHisArgAlaArgAsnLeuThrAlaLeuLeuLeuAspThrAr 3178155 : TTCGAGATATTTTGCCATCGAGCGAGAAATCTAACCGCCCTACTCTTGGATACCAG : 3178211 224 : gGluAsnGlyGluSerGluSerThrValLeuAlaThrGluArgSerIleIleIleL : 242 |..!|||.!!||||||..!..!.!! !! !.!!! ! !.! ! |||::: . gArgAsnSerGluSerArgGluAlaPheLysThrArgCysAsnArgIleLeuGlyA 3178212 : AAGAAACAGCGAGTCTAGAGAAGCTTTTAAGACCAGATGTAATCGaatacttggaa : 3178268 243 : ysLeuIleHisHisHisTrpArgIlePhe{Gl} >>>> Target Intron 1 : 252 .....:::...:!!||| !..!:!!!:!{:!} 87 bp snPheValGluTyrHisLeuGluValTyr{Ly}++ 3178269 : atttcgtggaATATCATCTGGAAGTTTAC{aa}gt..................... : 3178302 253 : >>>> {u}MetThrGluLeuPheAsnAspIlePheValPheValIleLeuSerGl : 268 {!}.!.|||:!! ! ! ||| !:!:||| !!:!:!!|||!!! !|| ++{s}PheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLeuGl 3178303 : ....ag{a}TTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCTGCA : 3178433 269 : nPheValThrSerIleThrValLeuCysValSerThrTyrAsnLeuAlaLeuCysL : 287 |||| !! !||| ||||||||||||:!!|||! !|||!!.:!!:!! ! !! nPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrIleA 3178434 : ATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGATTA : 3178490 288 : ysSerValAsnAsnAspPheValThrIlePheMetTyrLeuLeuCysMetLeuLeu : 305 !. !! !!!:!! :!!|||||| ! ! ! ||||||! !||||||||| ! snProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeuThr 3178491 : ATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACG : 3178544 306 : GlnIlePheMetTyrThrTrpTyrGlyAsnGluIleThrLeuArg : 320 |||:!:!:!:!:||| !|||!:!|||||||||:!:||||||!:! GlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys 3178545 : CAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: NvOr80 148 320 . KQ414646.1 3177988 3178591 + 310 M 103 309 S 0 2 5 0 2 I 0 83 3 0 2 S 1 1 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3177989 3178591 310 + . gene_id 1 ; sequence NvOr80 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3177989 3178299 . + . KQ414646.1 exonerate:protein2genome:local exon 3177989 3178299 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178300 3178301 . + . intron_id 1 ; splice_site "gt" KQ414646.1 exonerate:protein2genome:local intron 3178300 3178386 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3178385 3178386 . + . intron_id 0 ; splice_site "ag" KQ414646.1 exonerate:protein2genome:local cds 3178387 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178387 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3177989 3178591 310 + . alignment_id 1 ; Query NvOr80 ; Align 3177989 149 309 ; Align 3178388 253 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr80 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 16 -> 215 Target range: 3159671 -> 3160338 17 : ArgProArgSerTrpAspAspSerLysIleLeuThrAlaLeuTyrThrLeuTyrSe : 35 ||||||! !|||||| ! ||| ! |||! ! !||||||!.!:!!:!!!! ArgProThrSerTrp---LysSerProGlyLeuLysLeuLeuTyrAsnValHisTh 3159672 : AGGCCAACATCGTGG---AAGTCACCGGGGCTAAAGCTTCTCTATAACGTACACAC : 3159723 36 : rIleLeuSerPheThrValTyrTyrThrPheLeuIleSerGlnIleLeuAspIleV : 54 !:!! ! ! ! ..!||| ! !||||||!!!:!!:!!|||||||||||||||: rValThrValValValValLeuSerThrPhePheValAlaGlnIleLeuAspIleI 3159724 : GGTTACTGTAGTGGTAGTTCTTAGCACGTTTTTCGTCGCCCAGATATTggacatta : 3159780 55 : alLeuLeuAlaGluAsnIleGlnGlnIleThrGluAsnMetIleGlnLeuIleAsn : 72 ::... ...|||||| !.!.:!!.!!!:!!!:|||.!. ! ! ! ! ! lePheAsnValGluAsnGlnAspGluPheSerAspAsnPheCysIleThrCysCys 3159781 : ttttcaacgtgGAGAATCAAGACGAGTTTAGCGACAATTTCTGCATAACGTGCTGC : 3159834 73 : ValValAsnValSerGlnLysSerLeuCysPhePheLeuLysArgLysLysIleIl : 91 |||:!!||| ! ! !|||! !! ! !!!!..!.:!! !|||:!!! !||| ValMetAsnSerLeuGlyLysLeuTyrSerLeuLeuIleGlyArgGluMetIleGl 3159835 : GTGATGAACAGCCTTGGAAAGTTGTACAGCTTGCTGATAGGACGAGAAATGATCCA : 3159891 92 : eArgPheMetAspTyrPhePheGluAspMetThrLeuProGlnSerProArgGluL : 110 !!.!!!.!!:|||! .!. ...||| ! !||| !..! ! !|||! nAsnLeuIleAspSerLeuGlnSerAspProLeuArgProLeuAspGluValGluA 3159892 : AAATTTAATAGACTCGCTACAAAGTGACCCTCTTAGGCCGTTGGACGAAGTGGAGA : 3159948 111 : ysGluIleGlnLysSerPheAspAspGluSer{Ly} >>>> Target Intron : 121 !.||||||!:! !!!! !!!: ! !! !{:!} 73 bp snGluIleArgLeuArgHisGluLysThrIle{Gl}++ 3159949 : ATGAAATTCGATTGAGACACGAGAAGACAATC{GA}gt.................. : 3159985 122 : 1 >>>> {s}GlyAsnSerGlnLysLeuPheValLeuTyrSerValSerValVa : 136 {!} ! !|||..! !!:!..!:!!! !!!!||| ! !!. ++{u}LysLeuSerMet---AlaTyrThrValCysThrValLeuSerAl 3159986 : .......ag{A}AAGCTCTCGATG---GCCTATACGGTTTGTACAGTACTGAGCGC : 3160096 137 : lMetTyrValTyrMetProPhePheIleSerLysArgGluAspArgValLeuProT : 155 !! !|||!::||| !! !!!:!!! ! !..! !|||! !|||||| aThrGlyValTrpMetLeuSerAlaMetThrAlaPheArgIleArgGluLeuProL 3160097 : GACTGGTGTATGGATGTTGTCGGCCATGACGGCATTCAGGATCAGAGAGTTACCCC : 3160153 156 : yrArgAlaTrpArgProTyrSerLeu<->AspAsnValAsnTyrTyrTyrLeuAla : 172 !|||!.!||| !|||!:!..!! ! ! !!..:!!..! !!:! !|||.!! euArgValTrpLeuProPheAspTyrArgAlaThrLeuGlyIlePheSerLeuThr 3160154 : TTCGAGTATGGTTACCTTTCGATTATAGAGCCACATTGGGTATTTTCAGCCTTACC : 3160207 173 : TyrLeuHisGlnSerTrpSerValThrIleAlaAlaThrGlyAsnAlaAlaThrGl : 191 ||| !:!!|||! ! !!!:!!! !.!! !.!!|||!.!! ! !!.!|||!! TyrAlaTyrGlnPheValThrLeuIlePheIleThrThrAlaIleMetGlyThrAs 3160208 : TACGCTTATCAGTTTGTAACTCTGATATTCATTACTACCGCGATTATGGGTACTGA : 3160264 192 : uThrLeuValSerGlyPheMetIleGlnIleCysAlaGlnPheGluIleLeuGluH : 210 :!.!||| !!||||||.!.:!!|||!!.|||! !..!|||||||||||||||:!!| pAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIleLeuGlnH 3160265 : CAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATACTCCAAC : 3160321 211 : isArgPheMetGlnLeu : 215 |||||.!.! !...:!! isArgLeuLysSerIle 3160322 : ATCGTCTGAAGAGCATT : 3160338 vulgar: NvOr80 16 215 . KQ414646.1 3159671 3160338 + 159 M 5 15 G 1 0 M 98 294 S 0 2 5 0 2 I 0 69 3 0 2 S 1 1 M 4 12 G 1 0 M 37 111 G 0 3 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3159672 3160338 159 + . gene_id 2 ; sequence NvOr80 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3159672 3159982 . + . KQ414646.1 exonerate:protein2genome:local exon 3159672 3159982 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3159983 3159984 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3159983 3160055 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3160054 3160055 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3160056 3160338 . + . KQ414646.1 exonerate:protein2genome:local exon 3160056 3160338 . + . insertions 3 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3159672 3160338 159 + . alignment_id 2 ; Query NvOr80 ; Align 3159672 17 15 ; Align 3159687 23 294 ; Align 3160057 122 12 ; Align 3160069 127 111 ; Align 3160183 164 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr80 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 134 -> 215 Target range: 3150071 -> 3150314 135 : ValValMetTyrValTyrMetProPhePheIleSerLysArgGluAspArgValLe : 153 ..!|||:!:! !:!! !:!: !!! !!.:!!.!! ! !.!.!!:|||! !|| ThrValLeuCysMetIleLeuSerSerLeuLeuGlyAspPheAsnGluArgGluLe 3150072 : ACGGTCCTCTGTATGATCCTCTCTTCGTTGCTCGGCGACTTTAACGAGCGGGAACT : 3150126 154 : uProTyrArgAlaTrpArgProTyrSerLeuAspAsnValAsnTyrTyrTyrLeuA : 172 | !!||||||||||||! !|||!:!..!! !..! !!.!|||||||||:!!| uAlaTyrArgAlaTrpLeuProPheAspTyrSerLeuProThrTyrTyrTyrIleA 3150127 : GGCGTACAGAGCCTGGCTGCCCTTCGATTACTCTCTGCCAACTTACTATTACATCG : 3150183 173 : laTyrLeuHisGlnSerTrpSerValThrIleAlaAlaThrGlyAsnAlaAlaThr : 190 |||||:!!||||||! ! :!!:!!! ! !.!!:!! !..!|||!.!||| ! laTyrValHisGlnIleValAlaLeuIleGlyThrSerLeuSerAsnValAlaCys 3150184 : CGTACGTTCATCAGATCGTCGCGCTGATCGGTACGTCGCTTTCGAACGTCGCCTGC : 3150237 191 : GluThrLeuValSerGlyPheMetIleGlnIleCysAlaGlnPheGluIleLeuGl : 209 !!:..!:!!:!!!!!|||!!.:!::!!!!. !|||!.!||| |||||||||:! AspValIleIleCysGlyLeuLeuValHisAlaCysGlyGlnGlnGluIleLeuLy 3150238 : GACGTGATCATCTGCGGGTTGCTCGTTCACGCTTGCGGCCAACAGGAGATTCTCAA : 3150294 210 : uHisArgPheMetGlnLeu : 215 !||||||.!.! !:!!:!! sHisArgMetLysGluMet 3150295 : GCACAGAATGAAGGAGATG : 3150314 vulgar: NvOr80 134 215 . KQ414646.1 3150071 3150314 + 144 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150072 3150314 144 + . gene_id 3 ; sequence NvOr80 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150072 3150314 . + . KQ414646.1 exonerate:protein2genome:local exon 3150072 3150314 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150072 3150314 144 + . alignment_id 3 ; Query NvOr80 ; Align 3150072 135 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr80 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 135 -> 211 Target range: 3164358 -> 3164586 136 : ValMetTyrValTyrMetProPhePheIleSerLysArgGluAspArgValLeuPr : 154 !.!.!.!:::!!|||:!! !! .!!:!:!!! ! !.....!||| !||| AlaPheTrpIleTyrValArgSerLeuLeuThrAspPheSerSerArgLysLeuMe 3164359 : GCGTTCTGGATATACGTGAGATCGCTTTTGACAGATTTTAGTAGTAGAAAACTGAT : 3164413 155 : oTyrArgAlaTrpArgProTyrSerLeuAspAsnValAsnTyrTyrTyrLeuAlaT : 173 !!:!||||||||| !||||||..!! !..! !!.! ! !!:! !|||.!!! tPheArgAlaTrpLeuProTyrAspTyrSerProAlaProIlePheIleLeuThrP 3164414 : GTTTCGAGCATGGTTACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCT : 3164470 174 : yrLeuHisGlnSerTrpSerValThrIleAlaAlaThrGlyAsnAlaAlaThrGlu : 191 :!:!!||||||:!! :!!!.!||||||..!..!|||..!!:!!.!.!!..!!!: heValHisGlnAlaIleAlaAlaThrIleCysCysThrSerSerValThrValAsp 3164471 : TCGTCCATCAAGCTATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGAT : 3164524 192 : ThrLeuValSerGlyPheMetIleGlnIleCysAlaGlnPheGluIleLeuGluHi : 210 :!!||| !!!!|||!!.:!!|||.!.|||! !..!|||||||||||||||||||| SerLeuTyrThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHi 3164525 : TCTCTATACACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACA : 3164581 211 : sArg : 211 |||| sArg 3164582 : TCGT : 3164586 vulgar: NvOr80 135 211 . KQ414646.1 3164358 3164586 + 142 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164359 3164586 142 + . gene_id 4 ; sequence NvOr80 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164359 3164586 . + . KQ414646.1 exonerate:protein2genome:local exon 3164359 3164586 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164359 3164586 142 + . alignment_id 4 ; Query NvOr80 ; Align 3164359 136 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr80 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 251 -> 320 Target range: 3155805 -> 3156012 252 : GluMetThrGluLeuPheAsnAspIlePheValPheValIleLeuSerGlnPheVa : 270 ..!.!.|||! :!!.!.|||!!: !|||! !.!.!.!|||!!!!!!||||||!. ArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAl 3155806 : AGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGC : 3155860 271 : lThrSerIleThrValLeuCysValSerThrTyrAsnLeuAlaLeuCysLysSerV : 289 !..!|||! !!.!:!!||| !!!:! !||| |||.!! !! ! !. aValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValT 3155861 : GGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGA : 3155917 290 : alAsnAsnAspPheValThrIlePheMetTyrLeuLeuCysMetLeuLeuGlnIle : 307 .! ! ! !:!||| !|||.!!|||||| ! !||||||||| !|||||| hrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIle 3155918 : CGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATA : 3155971 308 : PheMetTyrThrTrpTyrGlyAsnGluIleThrLeuArg : 320 |||!!:||| !|||||||||||||||:!!! !|||!:! PheIleTyrCysTrpTyrGlyAsnGluValLysLeuLys 3155972 : TTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAG : 3156012 vulgar: NvOr80 251 320 . KQ414646.1 3155805 3156012 + 136 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155806 3156012 136 + . gene_id 5 ; sequence NvOr80 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155806 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155806 3156012 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155806 3156012 136 + . alignment_id 5 ; Query NvOr80 ; Align 3155806 252 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr80 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 135 -> 211 Target range: 3157830 -> 3158058 136 : ValMetTyrValTyrMetProPhePheIleSerLysArgGluAspArgValLeuPr : 154 ..!.!.!:!:!!|||:!! !! .!!:!:! ! ! !...:!!||| !||| ThrPhePheIleTyrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMe 3157831 : acGTTCTTTATATACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGAT : 3157885 155 : oTyrArgAlaTrpArgProTyrSerLeuAspAsnValAsnTyrTyrTyrLeuAlaT : 173 !!:!|||||||||! !||||||..!! !..! !!.! ! !!:! !|||.!!! tPheArgAlaTrpIleProTyrAspTyrSerProAlaProIlePheIleLeuThrS 3157886 : GTTTCGAGCATGGATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCT : 3157942 174 : yrLeuHisGlnSerTrpSerValThrIleAlaAlaThrGlyAsnAlaAlaThrGlu : 191 !:!!||||||:!! :!! !||||||..!..!|||..!!.!!.!.!!..!!!: erValHisGlnAlaIleAlaSerThrIleCysCysThrSerThrValThrValAsp 3157943 : CCGTCCATCAAGCTATAGCCTCGACGATATGTTGCACTTCGACCGTCACTGTGGAT : 3157996 192 : ThrLeuValSerGlyPheMetIleGlnIleCysAlaGlnPheGluIleLeuGluHi : 210 |||||| !!!!|||!!.:!!|||.!.|||! !..!|||||||||||||||||||| ThrLeuTyrThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHi 3157997 : ACTCTATACACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACA : 3158053 211 : sArg : 211 |||| sArg 3158054 : TCGT : 3158058 vulgar: NvOr80 135 211 . KQ414646.1 3157830 3158058 + 136 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157831 3158058 136 + . gene_id 6 ; sequence NvOr80 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3157831 3158058 . + . KQ414646.1 exonerate:protein2genome:local exon 3157831 3158058 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157831 3158058 136 + . alignment_id 6 ; Query NvOr80 ; Align 3157831 136 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr80 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 257 -> 317 Target range: 3158470 -> 3158647 258 : AsnAspIlePheValPheValIleLeuSerGlnPheValThrSerIleThrValLe : 276 |||!!: !||| !.!.:!!:!::!!||||||||| !! !|||!!::!!|||:! AsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIl 3158471 : AACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGAT : 3158525 277 : uCysValSerThrTyrAsnLeuAlaLeuCysLysSerValAsnAsnAspPheValT : 295 !||| !!!:! !|||...:!!.!!! ! !||| :!!:!:... |||||| eCysPheAsnLeuTyrArgMetThrGlnIleLys---MetAspThrLysPheValG 3158526 : CTGCTTCAATCTTTACCGAATGACACAGATCAAA---ATGGAcacgaaattcgtcg : 3158579 296 : hrIlePheMetTyrLeuLeuCysMetLeuLeuGlnIlePheMetTyrThrTrpTyr : 313 |||.!.:!:|||! !!!!|||! :!! !||||||||| ||| !|||||| luIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyr 3158580 : aaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGTTGGTAC : 3158633 314 : GlyAsnGluIle : 317 |||||||||:!: GlyAsnGluVal 3158634 : GGCAACGAAGTG : 3158647 vulgar: NvOr80 257 317 . KQ414646.1 3158470 3158647 + 130 M 30 90 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158471 3158647 130 + . gene_id 7 ; sequence NvOr80 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158471 3158647 . + . KQ414646.1 exonerate:protein2genome:local exon 3158471 3158647 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3158471 3158647 130 + . alignment_id 7 ; Query NvOr80 ; Align 3158471 258 90 ; Align 3158561 289 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr80 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 257 -> 317 Target range: 3164998 -> 3165175 258 : AsnAspIlePheValPheValIleLeuSerGlnPheValThrSerIleThrValLe : 276 |||!!: !||| !.!.:!!:!::!!||||||||| !! !|||!!::!!|||:! AsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIl 3164999 : AACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGAT : 3165053 277 : uCysValSerThrTyrAsnLeuAlaLeuCysLysSerValAsnAsnAspPheValT : 295 !||| !!!:! !|||...:!!.!!! ! !||| :!!:!:... |||||| eCysPheAsnLeuTyrArgMetThrGlnIleLys---MetAspThrLysPheValG 3165054 : CTGCTTCAATCTTTACCGAATGACACAGATCAAA---ATGGAcacgaaattcgtcg : 3165107 296 : hrIlePheMetTyrLeuLeuCysMetLeuLeuGlnIlePheMetTyrThrTrpTyr : 313 |||.!.:!:|||! !!!!|||! :!! !||||||||| ||| !|||||| luIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyr 3165108 : aaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTAC : 3165161 314 : GlyAsnGluIle : 317 |||||||||:!: GlyAsnGluVal 3165162 : GGCAACGAAGTG : 3165175 vulgar: NvOr80 257 317 . KQ414646.1 3164998 3165175 + 130 M 30 90 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164999 3165175 130 + . gene_id 8 ; sequence NvOr80 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164999 3165175 . + . KQ414646.1 exonerate:protein2genome:local exon 3164999 3165175 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3164999 3165175 130 + . alignment_id 8 ; Query NvOr80 ; Align 3164999 258 90 ; Align 3165089 289 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr80 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 251 -> 317 Target range: 3180460 -> 3180658 252 : GluMetThrGluLeuPheAsnAspIlePheValPheValIleLeuSerGlnPheVa : 270 ...:!:.!!|||:!!.!.||||||! !.!. !.!...!!!:!!!:!!|||||| ! SerLeuAlaGluIleMetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePh 3180461 : AGTTTAGCTGAAATAATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTT : 3180515 271 : lThrSerIleThrValLeuCysValSerThrTyrAsnLeuAlaLeuCysLysSerV : 289 ! !|||.!!! !|||:!!|||:!!||| ! !.!.||| ! !... ! ! !: eGlySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleL 3180516 : CGGAAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTC : 3180572 290 : alAsnAsnAspPheValThrIlePheMetTyrLeuLeuCysMetLeuLeuGlnIle : 307 !!!:!!.!!!:|||:!!.!!! ......|||||| :::|||||||||! ! euSerThrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSer 3180573 : TCAGCACCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGC : 3180626 308 : PheMetTyrThrTrpTyrGlyAsnGluIle : 317 |||:!:||| !|||||||||||||||:!: PheLeuTyrCysTrpTyrGlyAsnGluVal 3180627 : TTTCTTTACTGTTGGTACGGAAACGAAGTG : 3180658 vulgar: NvOr80 251 317 . KQ414646.1 3180460 3180658 + 127 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180461 3180658 127 + . gene_id 9 ; sequence NvOr80 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180461 3180658 . + . KQ414646.1 exonerate:protein2genome:local exon 3180461 3180658 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180461 3180658 127 + . alignment_id 9 ; Query NvOr80 ; Align 3180461 252 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr83PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 192 Query range: 285 -> 375 Target range: 3178525 -> 3179023 286 : TyrLeuIleCysThrMetGlyGluLeuPheAlaTyrCysTrpPheGlyAsnGluIl : 304 |||||| !|||! !:!: !:!!:!!!:! !|||||||||||||||||||||:! TyrLeuCysCysMetLeuThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluVa 3178526 : TATTTATGCTGTATGCTCACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGT : 3178580 305 : eThrValLys >>>> Target Intron 1 >>>> SerLeuGluPheSerTh : 313 :|||:!!||| 155 bp ||| !:!! ! .!! lThrLeuLys++ ++SerGluLysValGlyGl 3178581 : GACGTTGAAGgt.........................agAGCGAAAAAGTAGGCGA : 3178762 314 : rAspIleTyrAsnIleAspTrpThrAlaLeuSerGlnLysThrLysLysMetLeuI : 332 !! !||||||.!.!!:||||||||||||||| !! ! ! !!:!||| |||: uAlaIleTyrGluMetAspTrpThrAlaLeuProThrAspIleArgLysAspLeuL 3178763 : AGCTATTTACGAGATGGACTGGACGGCACTTCCCACCGATATAAGGAAAGATCTAT : 3178819 333 : leIleIleMetMetArgThrAsnLysProIleValIleSerTyrGlyTyrLeuIle : 350 !::!:|||||| !|||:!!!!.::!|||:!! !!!:!!! !|||:!!:!!:!! euLeuIleMetAlaArgSerLysArgProValLysMetThrSerGlyHisValVal 3178820 : TGCTGATCATGGCGAGATCAAAACGACCTGTTAAAATGACAAGCGGCCACGTCGTC : 3178873 351 : ValLeuAsnIleAspSerPheLysSer >>>> Target Intron 2 >>>> : 360 ||||||::! !!!:||||||! !||| 73 bp ValLeuSerAlaGluSerPheMetSer++ ++ 3178874 : GTTTTATCCGCAGAATCATTTATGTCTgt.........................ag : 3178974 361 : IleLeuLysValThrTyrThrAlaPheAsnValIleLysGluSerSer : 375 |||:!!|||:!!||||||:!!:!!!:!|||:!!:!:! !.!.|||!!! IleMetLysIleThrTyrSerSerTyrAsnLeuLeuThrAsnSerThr 3178975 : aTCATGAAGATAACGTATTCGTCGTACAACCTCTTGACAAATTCTACA : 3179023 vulgar: NvOr83PSE 285 375 . KQ414646.1 3178525 3179023 + 192 M 22 66 5 0 2 I 0 151 3 0 2 M 52 156 5 0 2 I 0 69 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178526 3179023 192 + . gene_id 1 ; sequence NvOr83PSE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3178526 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178526 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178592 3178593 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3178592 3178746 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3178745 3178746 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3178747 3178902 . + . KQ414646.1 exonerate:protein2genome:local exon 3178747 3178902 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178903 3178904 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3178903 3178975 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3178974 3178975 . + . intron_id 1 ; splice_site "ag" KQ414646.1 exonerate:protein2genome:local cds 3178976 3179023 . + . KQ414646.1 exonerate:protein2genome:local exon 3178976 3179023 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178526 3179023 192 + . alignment_id 1 ; Query NvOr83PSE ; Align 3178526 286 66 ; Align 3178747 308 156 ; Align 3178976 360 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr83PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 264 -> 368 Target range: 3175006 -> 3175395 265 : IleCysUnkTyrIleLeuThrIleGlyLysValAlaValLeuGluLysIleLeuAl : 283 !!:||| !!:!!!!! !:!: !:!!..! !|||! !..!:!!:!!||||| MetCysPheAsnLeuPheArgLeuThrGlnThrLysValTyrSerGlnValLeuAl 3175007 : ATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGGTGTATTCGCAAGTTTTAGC : 3175061 284 : aIleVal<->TyrLeuIleCysThrMetGlyGluLeuPheAlaTyrCysTrpPheG : 301 |:!::!! !:!:!!:!! !!..!.!.!.!:!!:!!||| !! !||||||!:!| aLeuIleProPheMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyrG 3175062 : ATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATG : 3175118 302 : lyAsnGluIleThrValLys{Se} >>>> Target Intron 1 >>>> {r} : 308 ||||||||! !! !||||||{ } 74 bp {!} lyAsnGluThrLysValLys{Va}-- ++{l} 3175119 : GAAACGAGACCAAAGTGAAG{GT}ac.........................ag{C} : 3175215 309 : LeuGluPheSerThrAspIleTyrAsnIleAspTrpThrAlaLeuSerGlnLysTh : 327 ||||||.!!!!! ! :!!!:!.!.! !:!!||||||||||||||||||!..|| LeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSerTh 3175216 : CTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAGCAC : 3175270 328 : rLysLysMetLeuIleIleIleMetMetArgThrAsnLysProIleValIleSerT : 346 |||||||! |||:!:! ||||||:!:|||:!! |||||||||! !.!!!!! rLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheThrG 3175271 : CAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCACCG : 3175327 347 : yrGlyTyrLeuIleValLeuAsnIleAspSerPheLysSerIleLeuLysValThr : 364 !!.!!:!:!!.!! !:!!|||:!:!!:||||||||||||:!!! ! lyAlaPheValPheProValAsnLeuGluSerPheLysSerValCysIleLysIle 3175328 : GCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAAAGTGTTTGTatcaaaata : 3175381 365 : TyrThrAlaPhe : 368 ||| ||| TyrIlePhePhe 3175382 : tatatatttttc : 3175395 vulgar: NvOr83PSE 264 368 . KQ414646.1 3175006 3175395 + 148 M 21 63 G 0 3 M 22 66 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3175007 3175395 148 + . gene_id 2 ; sequence NvOr83PSE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3175007 3175140 . + . KQ414646.1 exonerate:protein2genome:local exon 3175007 3175140 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3175141 3175142 . + . intron_id 1 ; splice_site "AC" KQ414646.1 exonerate:protein2genome:local intron 3175141 3175214 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3175213 3175214 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3175215 3175395 . + . KQ414646.1 exonerate:protein2genome:local exon 3175215 3175395 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3175007 3175395 148 + . alignment_id 2 ; Query NvOr83PSE ; Align 3175007 265 63 ; Align 3175073 286 66 ; Align 3175216 309 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr83PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 264 -> 368 Target range: 3160795 -> 3161184 265 : IleCysUnkTyrIleLeuThrIleGlyLysValAlaValLeuGluLysIleLeuAl : 283 !!:||| !!:!!!!! !:!: !:!!..! !|||! !..!:!!:!!||||| MetCysPheAsnLeuPheArgLeuThrGlnThrLysValTyrSerGlnValLeuAl 3160796 : ATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGGTGTATTCGCAAGTTTTAGC : 3160850 284 : aIleVal<->TyrLeuIleCysThrMetGlyGluLeuPheAlaTyrCysTrpPheG : 301 |:!::!! !:!:!!:!! !!..!.!.!.!:!!:!!||| !! !||||||!:!| aLeuIleProPheMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyrG 3160851 : ATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATG : 3160907 302 : lyAsnGluIleThrValLysSerLeuGluPheSerThrAspIleTyrAsn{Il} : 318 ||||||||! !! !|||||| !! !!!: !!! ! !:::::::::{||} lyAsnGluThrLysValLysValArgAspGlnThrAspPheLeuPheSer{Il}-+ 3160908 : GAAACGAGACCAAAGTGAAGGTACGTGATCAAACAGACTTCttattctca{at}tt : 3160960 319 : >>>> Target Intron 1 >>>> {e}AspTrpThrAlaLeuSerGlnLysTh : 327 74 bp {|}:!!||||||||||||||||||!..|| ++{e}AsnTrpThrAlaLeuSerGlnSerTh 3160961 : .........................ag{C}AACTGGACGGCACTGAGCCAGAGCAC : 3161059 328 : rLysLysMetLeuIleIleIleMetMetArgThrAsnLysProIleValIleSerT : 346 |||||||! |||:!:! ||||||:!:|||:!! |||||||||! !.!!!!! rLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheThrG 3161060 : CAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCACCG : 3161116 347 : yrGlyTyrLeuIleValLeuAsnIleAspSerPheLysSerIleLeuLysValThr : 364 !!.!!:!:!!.!! !:!!|||:!:!!:||||||||||||:!!! ! lyAlaPheValPheProValAsnLeuGluSerPheLysSerValCysIleLysIle 3161117 : GCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAAAGTGTTTGTatcaaaata : 3161170 365 : TyrThrAlaPhe : 368 ||| ||| TyrIlePhePhe 3161171 : tatatatttttc : 3161184 vulgar: NvOr83PSE 264 368 . KQ414646.1 3160795 3161184 + 141 M 21 63 G 0 3 M 32 96 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160796 3161184 141 + . gene_id 3 ; sequence NvOr83PSE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3160796 3160959 . + . KQ414646.1 exonerate:protein2genome:local exon 3160796 3160959 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3160960 3160961 . + . intron_id 1 ; splice_site "tt" KQ414646.1 exonerate:protein2genome:local intron 3160960 3161033 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3161032 3161033 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3161034 3161184 . + . KQ414646.1 exonerate:protein2genome:local exon 3161034 3161184 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160796 3161184 141 + . alignment_id 3 ; Query NvOr83PSE ; Align 3160796 265 63 ; Align 3160862 286 96 ; Align 3161035 319 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr83PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 255 -> 369 Target range: 3180511 -> 3180940 256 : PheAlaGlyAlaLeuAlaPheSerIleIleCysUnkTyrIleLeuThrIleGlyLy : 274 ||| !|||::!!!! ! ! ! ! !:!: !! ! ||| !! !!.! ! PhePheGlySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAs 3180512 : TTTTTCGGAAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGA : 3180566 275 : sValAlaValLeuGluLysIleLeuAlaIleValTyrLeuIleCysThrMetGlyG : 293 :!! ! ! !||| :!! !.!!||| |||||| !:!! !: pIleLeuSerThrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuG 3180567 : TATTCTCAGCACCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGC : 3180623 294 : luLeuPheAlaTyrCysTrpPheGlyAsnGluIleThrValLysSerLeuGluPhe : 311 !! !||| !|||||||||!:!|||||||||:!:! !..!||| :!!...!:! lnSerPheLeuTyrCysTrpTyrGlyAsnGluValArgThrLys---ValArgTyr 3180624 : AGAGCTTTCTTTACTGTTGGTACGGAAACGAAGTGAGAACGAAG---GTTCGCTAT : 3180674 312 : Ser{T} >>>> Target Intron 1 >>>> {hr}AspIleTyrAsnIleAs : 319 |||{!} 90 bp {.!}! !!:!:!:!!:!!|| Ser{A}+- ++{sn}ValMetPheHisValAs 3180675 : TCG{A}gg.........................ag{AC}GTGATGTTTCACGTAGA : 3180788 320 : pTrpThrAlaLeuSerGlnLysThrLysLysMetLeuIleIleIleMetMetArgT : 338 |||||||!.!||||||:!!||| !!:!|||!!::!!:!!.!! |||! !|||| pTrpThrGlyLeuSerGluLysGlyArgLysIleIleLeuPheAlaMetThrArgT 3180789 : TTGGACGGGATTGAGCGAGAAAGGGAGGAAGATCATTTTATTCGCGATGACGAGAA : 3180845 339 : hrAsnLysProIleValIleSerTyrGlyTyrLeuIleValLeuAsnIleAspSer : 356 ||.....!||||||:!!.!!..! !! !:!!:!!|||..!:!!|||||||||! ! hrArgSerProIleLeuPheGluSerValHisValIleThrValAsnIleAspPhe 3180846 : CACGATCGCCGATTTTATTCGAGAGCGTTCATGTGATCACGGTGAACATCGACTTC : 3180899 357 : PheLysSerIleLeuLysValThrTyrThrAlaPheAsn : 369 ||| ! !:!! !!:!..! ||| |||::: PheValValValSerArgThrLeuTyrLeuHisPheSer 3180900 : TTCGTGGTCGTCAGTAGAACActatatttacacttttcA : 3180940 vulgar: NvOr83PSE 255 369 . KQ414646.1 3180511 3180940 + 138 M 52 156 G 1 0 M 4 12 S 0 1 5 0 2 I 0 86 3 0 2 S 1 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180512 3180940 138 + . gene_id 4 ; sequence NvOr83PSE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3180512 3180680 . + . KQ414646.1 exonerate:protein2genome:local exon 3180512 3180680 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3180681 3180682 . + . intron_id 1 ; splice_site "GG" KQ414646.1 exonerate:protein2genome:local intron 3180681 3180770 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3180769 3180770 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3180771 3180940 . + . KQ414646.1 exonerate:protein2genome:local exon 3180771 3180940 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180512 3180940 138 + . alignment_id 4 ; Query NvOr83PSE ; Align 3180512 256 156 ; Align 3180668 309 12 ; Align 3180773 314 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr83PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 114 -> 206 Target range: 3180056 -> 3180332 115 : AlaIleHisPheAsnGlyLeuAlaGlnValAlaValAlaLeuLeuAlaAlaMetPr : 133 |||:!!...!:!!.. !:!!!.!:!!:!!:!!||||||! ! ! ! !! ! AlaValArgTyrThrMetValValGluMetSerValAlaSerThrIleLeuAsnSe 3180057 : GCTGTCAGATACACAATGGTAGTCGAGATGTCGGTCGCCTCGACTATTTTAAACTC : 3180111 134 : oLeuValGlnGluProGlyGluArgAspLeuProTyrArgMetTrpLeuLeuTyrA : 152 !|||||| .!. ! !.!. !! ||| !!|||||| |||!!!! !|||| rLeuValThrAsnPheGlnHisGlyArgLeuThrTyrArgGlyTrpPheProTyrA 3180112 : GTTAGTGACCAACTTTCAACACGGCAGACTAACCTACAGAGGCTGGTTCCCTTACG : 3180168 153 : spIleHisAspAlaLeuAsnTyrTrpIleThrTyrAlaValIleAlaGlyValIle : 170 || ! !|||:!! !!:! :!:|||||||||:!! ! ! !:!: spTyrThrThrAlaValLeuPheProLeuThrTyrAlaLeuGlnLeuLeuCysVal 3180169 : ATTACACGACCGCCGTACTTTTTCCATTGACATACGCTCTGCAGCTATTATGCGTG : 3180222 171 : IleIleGlyValLeuIleAsnValSerValAspValValIleSerGlyPheValLe : 189 :!!:!! ! !! !|||:!!||||||||||||:!!:!!.!!! !|||.!.:!!:! LeuValTyrSerTrpIleHisValSerValAspIleLeuPhePheGlyLeuLeuMe 3180223 : CTCGTATATTCCTGGATCCACGTTTCAGTGGATATTCTCTTCTTCGGACTGTTGAT : 3180279 190 : uLysAlaCysMetGlnLeuAspMetLeuLysHisArgLeuAsnArgLeuSer : 206 !:!! !||| |||!!!|||:::||| |||...!:!!!!:!!!!! tGlnLeuCysCysGlnPheAspIleLeuPheSerArgPheSerSerIleThr 3180280 : GCAACTGTGCTGTCAATTCGAcattctcttctctcgtttcAGTAGCATAACG : 3180332 vulgar: NvOr83PSE 114 206 . KQ414646.1 3180056 3180332 + 112 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180057 3180332 112 + . gene_id 5 ; sequence NvOr83PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180057 3180332 . + . KQ414646.1 exonerate:protein2genome:local exon 3180057 3180332 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180057 3180332 112 + . alignment_id 5 ; Query NvOr83PSE ; Align 3180057 115 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr90PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 114 -> 170 Target range: 3180574 -> 3180829 115 : SerProAlaPheTyrValMetLeuPheTyrLeuSerGlyLeuMetThrGlnLeuPh : 133 ||| !!! !|||! !.!! !:::||||||||||||...::!:!! !||| !|| SerThrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPh 3180575 : AGCACCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGCTT : 3180629 134 : eMetPheCysTrpPheGlyAsnGluValThrValArg >>>> Target Intro : 146 |:!:!:!||||||!:!||||||||||||! !..!!:! 87 bp eLeuTyrCysTrpTyrGlyAsnGluValArgThrLys++ 3180630 : TCTTTACTGTTGGTACGGAAACGAAGTGAGAACGAAGgt................. : 3180670 147 : n 1 >>>> SerGlnGluLeuGlyMetThrIleLeuGluAlaSerTrpThrGlyL : 161 ||| !!!:|||!.! ..!!!:!!!.!.!.!..!|||||||||| ++SerValAspLeuAlaAspValMetPheHisValAspTrpThrGlyL 3180671 : ........agAGCGTAGATCTGGCAGACGTGATGTTTCACGTAGATTGGACGGGAT : 3180800 162 : euSerThrGlnSerLeuLysAlaIleLeu : 170 ||||| !:!!.!! !||| !|||||| euSerGluLysGlyArgLysIleIleLeu 3180801 : TGAGCGAGAAAGGGAGGAAGATCATTTTA : 3180829 vulgar: NvOr90PSE 114 170 . KQ414646.1 3180574 3180829 + 115 M 31 93 5 0 2 I 0 83 3 0 2 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180575 3180829 115 + . gene_id 1 ; sequence NvOr90PSE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3180575 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180575 3180667 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3180668 3180669 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3180668 3180754 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3180753 3180754 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3180755 3180829 . + . KQ414646.1 exonerate:protein2genome:local exon 3180755 3180829 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180575 3180829 115 + . alignment_id 1 ; Query NvOr90PSE ; Align 3180575 115 93 ; Align 3180755 146 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr91PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 0 -> 120 Target range: 3152421 -> 3152781 1 : MetAspGlyPheAsnProAlaPheGluIleLeuThrCysPheGlyPheTrpLysPr : 19 |||||| !.!.!:! !.!!|||:!!:!!|||||| !|||.!! ! !|| MetAspThrLeuSerTrpThrPheLysLeuLeuThrValAsnGlyIleLeuAlaPr 3152422 : aTGGATACTCTAAGCTGGACGTTCAAGCTTCTGACGGTGAACGGTATTCTGGCACC : 3152476 20 : oThrSerTrpProThrProTrpSerGluArgPheTyrAspGlyIleArgValMetL : 38 |:!!:!!!:: !:!!! !|||..! !! !!!.|||! ! !! ! !!.!.: oSerAlaPheMetSerGlnTrpGlnThrIleLeuTyrGlyMetTyrMetPhePheM 3152477 : GTCCGCTTTCATGTCTCAGTGGCAGACGATTTTGTACGGGATGTACATGTTCTTCA : 3152533 39 : euValSerLeuLeuTyrTyrLeuAlaLeuGlyGlnIleLeuArgLeuLeuLeuAsp : 56 !!||||||:!!|||||| :!!! !! ! !!! !|||||| !!:!!:!!!!!:!! etValSerMetLeuTyrAlaMetGluCysCysLeuIleLeuGlyMetIlePheAsn 3152534 : TGGTGTCGATGCTCTACGCGATGGAGTGCTGCCTGATCTTGGGCATGATATTCAAC : 3152587 57 : ThrIleSerIleAspGluMetAlaAspThrLeuPheSerMetMetSerThrValAs : 75 ..! !||| !!:!!:.!.::!!!:!.!|||!:!! !! !:!!! ! !:!! ValAspSerGlnGluAspPheSerGluAsnLeuTyrIleThrLeuIleLeuMetCy 3152588 : GTGGACAGTCAGGAGGATTTCAGCGAGAATCTGTATATCACGTTGATACTGATGTG : 3152644 76 : nAlaCysCysLysLeuThrAsnMetHisLeuArgAsnLysGlnIleAspGluLeuM : 94 !::!|||||||||:!! !! :!! ! ! ! ||| !||| ! ! :!!: sSerCysCysLysIleTyrMetLeuValThrSerAlaLysGlyIleLysValMetV 3152645 : CAGCTGTTGCAAAATCTACATGCTGGTCACTTCTGCGAAGGGGATCAAAGTTATGG : 3152701 95 : etAspMetLeuArgIleGluTrpThrLysProGlyAsnLysGluGluAsnValIle : 112 !!|||:!:|||||| ||| ! !||| !|||!:!|||||||||! !||| alAspValLeuArgGluGluProPheValProMetAsnArgGluGluAsnGluIle 3152702 : TGGACGTCCTTCGAGAGGAGCCTTTCGTGCCTATGAACAGAGAAGAGAACGAGATT : 3152755 113 : TyrAsnGlyPheAsnAspIleIle : 120 !!|||.!.!!:! !||| ArgValArgPheGluGluLysIle 3152756 : AGAGTGAGATTCGAGGAGAAAATC : 3152781 vulgar: NvOr91PSE 0 120 . KQ414646.1 3152421 3152781 + 137 M 120 360 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3152422 3152781 137 + . gene_id 1 ; sequence NvOr91PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3152422 3152781 . + . KQ414646.1 exonerate:protein2genome:local exon 3152422 3152781 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3152422 3152781 137 + . alignment_id 1 ; Query NvOr91PSE ; Align 3152422 1 360 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr91PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 246 -> 342 Target range: 3165097 -> 3165539 247 : GluPheTyrMetMetLeuPheTyrLeuSerSerValMetThrGlnLeuPheLeuPh : 265 :::||| ::::!!.!!|||! !! !!!!..!!!:||||||:!!|||! !!: LysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTy 3165098 : aaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTA : 3165152 266 : eCysTrpPheGlyAsnGluLeuMetIleArgSerGlnGluLeuGlu{T} >>>> : 281 !||||||!:!|||||||||:!!! !!:! !.!..!.! !...{ } rCysTrpTyrGlyAsnGluValLysHisLysValAspHisCysHis{A}-+ 3165153 : TTGCTGGTACGGCAACGAAGTGAAACATAAGGTTGATCATTGTcac{g}at..... : 3165203 282 : Target Intron 1 >>>> {hr}ThrIleLeuGluSerAspTrpThrThrLeu : 291 80 bp { !}! !|||!!!.!.||||||||||||:!!||| +-{sp}MetIlePheHisSerAspTrpThrSerLeu 3165204 : ....................at{AC}ATGATATTTCACAGCGACTGGACGTCTTTG : 3165310 292 : SerLeuGlnSerThrArgSerIleLeuLeuIleSerLeuArgThrSerLysProIl : 310 !:! !.!. !||||||:!!:!!|||:!!!!:! ! !|||.!! !!:!||||| AsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgProIl 3165311 : AACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAAT : 3165367 311 : eLeuIleSerArgGlyTyrPheValProPheSerLeuGluThrPheLysArg >> : 328 | !.!!!!!!!! !:!! !!||| !! ! !:!||||||:!!|||! ! ! eGluPheThrSerIleHisValValSerValAsnLeuGluSerPheMetAla++ 3165368 : AGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt.. : 3165423 329 : >> Target Intron 2 >>>> IleLeuLysValSerTyrThrAlaPheAsnG : 338 74 bp :!!:!!|||..!||||||:!!||||||||| ++ValIleLysThrSerTyrSerAlaPheAsnM 3165424 : .......................agGTAATAAAAACTTCGTACTCCGCGTTCAACA : 3165525 339 : luLeuArgAspSer : 342 !:!!!:!.!.||| etIleGlnGlnSer 3165526 : TGATCCAACAAAGC : 3165539 vulgar: NvOr91PSE 246 342 . KQ414646.1 3165097 3165539 + 135 M 34 102 S 0 1 5 0 2 I 0 76 3 0 2 S 1 2 M 46 138 5 0 2 I 0 70 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3165098 3165539 135 + . gene_id 2 ; sequence NvOr91PSE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3165098 3165200 . + . KQ414646.1 exonerate:protein2genome:local exon 3165098 3165200 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165201 3165202 . + . intron_id 1 ; splice_site "at" KQ414646.1 exonerate:protein2genome:local intron 3165201 3165280 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3165279 3165280 . + . intron_id 0 ; splice_site "AT" KQ414646.1 exonerate:protein2genome:local cds 3165281 3165420 . + . KQ414646.1 exonerate:protein2genome:local exon 3165281 3165420 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165421 3165422 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165421 3165494 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3165493 3165494 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165495 3165539 . + . KQ414646.1 exonerate:protein2genome:local exon 3165495 3165539 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3165098 3165539 135 + . alignment_id 2 ; Query NvOr91PSE ; Align 3165098 247 102 ; Align 3165283 282 138 ; Align 3165495 328 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr91PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 7 -> 112 Target range: 3177252 -> 3177567 8 : PheGluIleLeuThrCysPheGlyPheTrpLysProThrSerTrpProThrProTr : 26 |||! :!:|||||||||! !|||!:!||||||||||||!.!||||||.!! !! PheAlaLeuLeuThrCysCysGlyTyrTrpLysProThrLysTrpProAlaSerSe 3177253 : TTCGCTCTGCTTACTTGCTGCGGCTACTGGAAACCGACAAAATGGCCAGCTAGTTC : 3177307 27 : pSerGluArgPhe<->TyrAspGlyIleArgValMetLeuValSerLeuLeuTyrT : 44 ! !:!! !!:: ||||||! ! ! !|||.!.:!!|||! !|||||||||: rLeuLysTyrTrpLeuTyrAspValTyrSerValPheMetValPheLeuLeuTyrP 3177308 : GCTGAAATACTGGCTGTACGACGTTTACTCGGTGTTTATGGTCTTTTTGCTctatt : 3177364 45 : yrLeuAlaLeuGlyGlnIleLeuArgLeuLeuLeuAspThrIleSerIleAspGlu : 62 ::......... ! ! !:!! !! !|||:!!..!! ! ..!:!! ! ! hePheThrPheCysAlaCysIleAspSerLeuIleSerLys---AspLeuLysThr 3177365 : ttttcacgttttgCGCATGCATAGACTCGTTGATCAGCAAA---GATCTCAAGACG : 3177415 63 : MetAlaAspThrLeuPheSerMetMetSerThrValAsnAlaCysCysLysLeuTh : 81 |||.!!|||! !!!!! ! !.!.!!:|||..! !!..!!.!! ! |||:!!.! MetThrAspLysPheSerLeuPheIleSerValPheGlyValSerLeuLysValAl 3177416 : ATGACAGATAAGTTTTCTCTGTTCATCTCTGTGTTCGGTGTCTCTCTGAAAGTAGC : 3177472 82 : rAsnMetHisLeuArgAsnLysGlnIleAspGluLeuMetAspMetLeuArgIleG : 100 !|||:!: !|||!:!... !::!||| .!.:!!|||:!!!!:|||! !! | aAsnLeuPheLeuGlnArgGlyArgIleIleAsnValMetAsnIleLeuLeuThrG 3177473 : CAATTTATTCCTTCAACGGGGGAGGATTATAAACGTGATGAACATTTTGCTGACGG : 3177529 101 : luTrpThrLysProGlyAsnLysGluGluAsnValIle : 112 || !! ||| !!:!!:!!:!!|||!!.:!!||| luAsnCysIleProArgAspGluGlnGluLysIleIle 3177530 : AGAATTGCATCCCGAGGGACGAGCAAGAAAAGATAATA : 3177567 vulgar: NvOr91PSE 7 112 . KQ414646.1 3177252 3177567 + 121 M 23 69 G 0 3 M 27 81 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3177253 3177567 121 + . gene_id 3 ; sequence NvOr91PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3177253 3177567 . + . KQ414646.1 exonerate:protein2genome:local exon 3177253 3177567 . + . insertions 3 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3177253 3177567 121 + . alignment_id 3 ; Query NvOr91PSE ; Align 3177253 8 69 ; Align 3177325 31 81 ; Align 3177406 59 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr91PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 246 -> 328 Target range: 3158569 -> 3158895 247 : GluPheTyrMetMetLeuPheTyrLeuSerSerValMetThrGlnLeuPheLeuPh : 265 :::||| ::::!!.!!|||! !! !!!!..!!!:||||||:!!|||! !!: LysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTy 3158570 : aaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTA : 3158624 266 : eCysTrpPheGlyAsnGluLeuMetIleArgSerGlnGluLeuGlu{T} >>>> : 281 !||||||!:!|||||||||:!!! !!:! !.!..!.! !...{ } rCysTrpTyrGlyAsnGluValLysAspLysValAspHisCysHis{A}-+ 3158625 : TTGTTGGTACGGCAACGAAGTGAAAGATAAGGTTGATCATTGTcac{g}at..... : 3158675 282 : Target Intron 1 >>>> {hr}ThrIleLeuGluSerAspTrpThrThrLeu : 291 80 bp { !}! !|||!!!.!.||||||||||||:!!||| +-{sp}MetIlePheHisSerAspTrpThrSerLeu 3158676 : ....................at{AC}ATGATATTTCACAGCGACTGGACGTCTTTG : 3158782 292 : SerLeuGlnSerThrArgSerIleLeuLeuIleSerLeuArgThrSerLysProIl : 310 !:! !.!. !||||||:!!:!!|||:!!!!:! ! !|||.!! !!:!||||| AsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgProIl 3158783 : AACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAAT : 3158839 311 : eLeuIleSerArgGlyTyrPheValProPheSerLeuGluThrPheLysArgIle : 328 | !.!!!!!!!! !:!! !!||| !! ! !:!||||||:!!|||! ! !:!! eGluPheThrSerIleHisValValSerValAsnLeuGluSerPheMetAlaVal 3158840 : AGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAGTC : 3158895 vulgar: NvOr91PSE 246 328 . KQ414646.1 3158569 3158895 + 117 M 34 102 S 0 1 5 0 2 I 0 76 3 0 2 S 1 2 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158570 3158895 117 + . gene_id 4 ; sequence NvOr91PSE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3158570 3158672 . + . KQ414646.1 exonerate:protein2genome:local exon 3158570 3158672 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3158673 3158674 . + . intron_id 1 ; splice_site "at" KQ414646.1 exonerate:protein2genome:local intron 3158673 3158752 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3158751 3158752 . + . intron_id 0 ; splice_site "AT" KQ414646.1 exonerate:protein2genome:local cds 3158753 3158895 . + . KQ414646.1 exonerate:protein2genome:local exon 3158753 3158895 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3158570 3158895 117 + . alignment_id 4 ; Query NvOr91PSE ; Align 3158570 247 102 ; Align 3158755 282 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr91PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 7 -> 118 Target range: 3179634 -> 3179964 8 : PheGluIleLeuThrCysPheGlyPheTrpLysProThrSerTrpProThrProTr : 26 ||| ...|||::! ! !|||! !|||!:!|||! !|||||| !!:!! !!!: PheThrPheLeuSerIleGlyGlyCysTrpArgProIleSerTrpSerSerThrTy 3179635 : tttacatttctcaGTATCGGTGGCTGTTGGAGACCGATCTCGTGGTCTTCGACGTA : 3179689 27 : pSerGluArgPheTyrAspGlyIleArgValMetLeuValSerLeuLeuTyrTyrL : 45 :!.! ! !.!!|||:!!! ! !! !|||:!::!!:!!! !:!! ! ! !!! rLysThrAlaIleTyrAsnValTyrThrValLeuValLeuIleMetGlyValAsnP 3179690 : CAAAACGGCAATCTACAATGTCTACACCGTTCTCGTATTAATCATGGGTGTTAATT : 3179746 46 : euAlaLeuGlyGlnIleLeuArgLeuLeuLeuAspThrIleSerIleAspGluMet : 63 !! !:!!..!||| !!! !! !:!!!!! !! ! !!!!:!!.!.!!:.!. heMetValSerGln---PheGlySerMetPheThrIleGluThrValGlnAspPhe 3179747 : TCATGGTTTCGCAA---TTTGGCAGCATGTTCACCATAGAAACCGTACAAGATTTC : 3179797 64 : AlaAspThrLeuPheSerMetMetSerThrValAsnAlaCysCysLysLeuThrAs : 82 !.!||| ! !!:!! ! :!:|||..! !! !!.!||||||||||||:!!|| ValAspLeuThrTyrIleCysValSerValPheValGlyCysCysLysLeuSerAs 3179798 : GTCGACCTTACTTACATATGCGTCTCCGTGTTCGTCGGTTGTTGCAAGCTGTCAAA : 3179854 83 : nMetHisLeuArgAsnLysGlnIleAspGluLeuMetAspMetLeuArgIleGluT : 101 |:!! !!! !...|||.!.||| !!:||||||:!!!!:!!!! ! !!: nValValPheTyrArgLysAspIleIleAspLeuMetAsnIlePheMetGluAspP 3179855 : CGTGGTGTTCTATCGGAAAGATATCATAGACCTGATGAACATCTTCATGGAGGATC : 3179911 102 : rpThrLysProGlyAsnLysGluGluAsnValIleTyrAsnGlyPheAsnAsp : 118 ! ! !..!||||||||||||:!! !:!: ! !!!:!:!!||| roCysAlaCysSerAsnLysGluGluAspGlnValGlnAlaArgTyrAspAsp 3179912 : CTTGTGCATGTTCGAACAAGGAGGAGGACCAGGTGCAAGCGAGATACGACGAT : 3179964 vulgar: NvOr91PSE 7 118 . KQ414646.1 3179634 3179964 + 104 M 42 126 G 1 0 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3179635 3179964 104 + . gene_id 5 ; sequence NvOr91PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3179635 3179964 . + . KQ414646.1 exonerate:protein2genome:local exon 3179635 3179964 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3179635 3179964 104 + . alignment_id 5 ; Query NvOr91PSE ; Align 3179635 8 126 ; Align 3179761 51 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr91PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 239 -> 272 Target range: 3180559 -> 3180658 240 : AspAlaSerAlaSerSerProGluPheTyrMetMetLeuPheTyrLeuSerSerVa : 258 :!!|||..! ! !||| !!||||||! !! !:::|||||||||||||||:: AsnAlaAspIleLeuSerThrGluPheLeuAlaThrIlePheTyrLeuSerSerIl 3180560 : AACGCAGATATTCTCAGCACCGAATTCTTAGCGACGAtattttatctgagctcgat : 3180614 259 : lMetThrGlnLeuPheLeuPheCysTrpPheGlyAsnGluLeu : 272 !:!! !||| !||||||!:!||||||!:!|||||||||:!! eLeuLeuGlnSerPheLeuTyrCysTrpTyrGlyAsnGluVal 3180615 : ACTGCTGCAGAGCTTTCTTTACTGTTGGTACGGAAACGAAGTG : 3180658 vulgar: NvOr91PSE 239 272 . KQ414646.1 3180559 3180658 + 101 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180560 3180658 101 + . gene_id 6 ; sequence NvOr91PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180560 3180658 . + . KQ414646.1 exonerate:protein2genome:local exon 3180560 3180658 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180560 3180658 101 + . alignment_id 6 ; Query NvOr91PSE ; Align 3180560 240 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr85 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 246 Query range: 248 -> 390 Target range: 3178372 -> 3179026 249 : AspTyrIleIleLysTyrAlaLysValValThrGluThrPheAspValValIleVa : 267 ::::::||| :::!:!.!!:!!..!|||!.! ..!|||.!. !:!!||| ! AsnPheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePh 3178373 : aatttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTT : 3178427 268 : lGluGlnPhePheAlaGlyAlaLeuIlePheSerValIleIleTyrValLeuThrI : 286 ! !||||||! ! !.!!:!! !:!:.!.!!!:!!! !|||||| !:!!:!!! eLeuGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerT 3178428 : CCTGCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGA : 3178484 287 : leGlyLysValProIleLeuGlnLysLeuMetSerValGlyTyrLeuIleCysMet : 304 !!!. ! !! !:!!.!. :!! !!!!!.!..!|||||| !|||||| hrIleAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMet 3178485 : CGATTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATG : 3178538 305 : LeuGlyGluLeuPheAlaTyrCysTrpPheGlyAsnGluIleThrLeuLys >>> : 322 ||| !:!!:!!!:! !|||||||||||||||||||||:!:||||||||| LeuThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys++ 3178539 : CTCACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAGgt... : 3178594 323 : > Target Intron 1 >>>> SerLeuGluPheSerAspAspIleTyrLysIl : 332 155 bp ||| !:!! ! .!!!!:! !||||||:!!!! ++SerGluLysValGlyGluAlaIleTyrGluMe 3178595 : ......................agAGCGAAAAAGTAGGCGAAGCTATTTACGAGAT : 3178777 333 : eAspTrpMetAlaLeuSerAspSerSerAsnLysLysLeuIlePheIleMetMetA : 351 :||||||! !|||||| !! !..!! !!..||| ! |||:!:.!.|||||| !| tAspTrpThrAlaLeuProThrAspIleArgLysAspLeuLeuLeuIleMetAlaA 3178778 : GGACTGGACGGCACTTCCCACCGATATAAGGAAAGATCTATTGCTGATCATGGCGA : 3178834 352 : rgAlaThrGlnProIleIleMetSerTyrGlyHisLeuValIleLeuAsnIleGlu : 369 ||:!!! !!:!|||:!!! !|||!!! !||||||:!!|||:!!|||::! !||| rgSerLysArgProValLysMetThrSerGlyHisValValValLeuSerAlaGlu 3178835 : GATCAAAACGACCTGTTAAAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAA : 3178888 370 : SerPheLysSer >>>> Target Intron 2 >>>> IleLeuLysIleThr : 378 ||||||! !||| 73 bp |||:!!||||||||| SerPheMetSer++ ++IleMetLysIleThr 3178889 : TCATTTATGTCTgt.........................agaTCATGAAGATAACG : 3178988 379 : TyrThrAlaPheAsnIleLeuLysGluSerThrSer : 390 |||:!!:!!!:!|||:!!|||! !.!.||||||!:! TyrSerSerTyrAsnLeuLeuThrAsnSerThrAsn 3178989 : TATTCGTCGTACAACCTCTTGACAAATTCTACAAAC : 3179026 vulgar: NvOr85 248 390 . KQ414646.1 3178372 3179026 + 246 M 73 219 5 0 2 I 0 151 3 0 2 M 52 156 5 0 2 I 0 69 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178373 3179026 246 + . gene_id 1 ; sequence NvOr85 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3178373 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178373 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178592 3178593 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3178592 3178746 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3178745 3178746 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3178747 3178902 . + . KQ414646.1 exonerate:protein2genome:local exon 3178747 3178902 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178903 3178904 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3178903 3178975 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3178974 3178975 . + . intron_id 1 ; splice_site "ag" KQ414646.1 exonerate:protein2genome:local cds 3178976 3179026 . + . KQ414646.1 exonerate:protein2genome:local exon 3178976 3179026 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178373 3179026 246 + . alignment_id 1 ; Query NvOr85 ; Align 3178373 249 219 ; Align 3178747 322 156 ; Align 3178976 374 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr85 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 190 Query range: 251 -> 382 Target range: 3174931 -> 3175395 252 : IleLysTyrAlaLysValValThrGluThrPheAspValValIleValGluGlnPh : 270 .!!!:!!:!|||:!!:!!:!!!.!! !! !|||..!:!!..!!!:!.! !||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3174932 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3174986 271 : ePheAlaGlyAlaLeuIlePheSerValIleIleTyrValLeuThrIleGlyLysV : 289 |.!.!.! !.!!:!!! !.!.!!! !!! !:!!!:! !|||||| !|||| eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3174987 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3175043 290 : alProIleLeuGlnLysLeuMetSerValGlyTyrLeuIleCysMetLeuGlyGlu : 307 || !! !||| ||| ! !:!! !!:!:!!:!! !!:!!!!!!.!:!! al---TyrSerGlnValLeuAlaLeuIleProPheMetValSerValPheAlaGln 3175044 : TG---TATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAG : 3175094 308 : LeuPheAlaTyrCysTrpPheGlyAsnGluIleThrLeuLys >>>> Target : 322 :!!||| !! !||||||!:!|||||||||! !! !:!!||| 74 IlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys++ 3175095 : ATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGgt............ : 3175141 323 : Intron 1 >>>> SerLeuGluPheSerAspAspIleTyrLysIleAspTrpMe : 335 bp |||||||||.!!!!!||| :!!!:!:!!! !:!!|||! ++SerLeuGluIleCysAspThrValPheGluSerAsnTrpTh 3175142 : .............agAGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGAC : 3175252 336 : tAlaLeuSerAspSerSerAsnLysLysLeuIlePheIleMetMetArgAlaThrG : 354 !|||||||||.!.|||!!!!!.|||! !|||:!: ||||||:!:|||:!! !: rAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuL 3175253 : GGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGA : 3175309 355 : lnProIleIleMetSerTyrGlyHisLeuValIleLeuAsnIleGluSerPheLys : 372 !!|||||| !.!.!!! !!.! !:!! !! !:!!|||:!:|||||||||||| ysProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSerPheLys 3175310 : AGCCAATAGAATTCACCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAA : 3175363 373 : SerIleLeuLysIleThrTyrThrAlaPhe : 382 |||:!!! ! ||| ||| SerValCysIleLysIleTyrIlePhePhe 3175364 : AGTGTTTGTatcaaaatatatatatttttc : 3175395 vulgar: NvOr85 251 382 . KQ414646.1 3174931 3175395 + 190 M 38 114 G 1 0 M 31 93 5 0 2 I 0 70 3 0 2 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174932 3175395 190 + . gene_id 2 ; sequence NvOr85 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3174932 3175138 . + . KQ414646.1 exonerate:protein2genome:local exon 3174932 3175138 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3175139 3175140 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3175139 3175212 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3175211 3175212 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3175213 3175395 . + . KQ414646.1 exonerate:protein2genome:local exon 3175213 3175395 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3174932 3175395 190 + . alignment_id 2 ; Query NvOr85 ; Align 3174932 252 114 ; Align 3175046 291 93 ; Align 3175213 322 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr85 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 251 -> 382 Target range: 3160720 -> 3161184 252 : IleLysTyrAlaLysValValThrGluThrPheAspValValIleValGluGlnPh : 270 .!!!:!!:!|||:!!:!!:!!!.!! !! !|||..!:!!..!!!:!.! !||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3160721 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3160775 271 : ePheAlaGlyAlaLeuIlePheSerValIleIleTyrValLeuThrIleGlyLysV : 289 |.!.!.! !.!!:!!! !.!.!!! !!! !:!!!:! !|||||| !|||| eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3160776 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3160832 290 : alProIleLeuGlnLysLeuMetSerValGlyTyrLeuIleCysMetLeuGlyGlu : 307 || !! !||| ||| ! !:!! !!:!:!!:!! !!:!!!!!!.!:!! al---TyrSerGlnValLeuAlaLeuIleProPheMetValSerValPheAlaGln 3160833 : TG---TATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAG : 3160883 308 : LeuPheAlaTyrCysTrpPheGlyAsnGluIleThrLeuLysSerLeuGluPheSe : 326 :!!||| !! !||||||!:!|||||||||! !! !:!!||| !! !!!: !! IlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLysValArgAspGlnTh 3160884 : ATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGGTACGTGATCAAAC : 3160940 327 : rAspAspIleTyrLys{Il} >>>> Target Intron 1 >>>> {e}AspT : 334 !||| !::::::...{||} 74 bp {|}:!!| rAspPheLeuPheSer{Il}-+ ++{e}AsnT 3160941 : AGACTTCttattctca{at}tt.........................ag{C}AACT : 3161038 335 : rpMetAlaLeuSerAspSerSerAsnLysLysLeuIlePheIleMetMetArgAla : 352 ||! !|||||||||.!.|||!!!!!.|||! !|||:!: ||||||:!:|||:!! rpThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgSer 3161039 : GGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCG : 3161092 353 : ThrGlnProIleIleMetSerTyrGlyHisLeuValIleLeuAsnIleGluSerPh : 371 !:!!|||||| !.!.!!! !!.! !:!! !! !:!!|||:!:|||||||| LeuLysProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSerPh 3161093 : TTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTT : 3161149 372 : eLysSerIleLeuLysIleThrTyrThrAlaPhe : 382 |||||||:!!! ! ||| ||| eLysSerValCysIleLysIleTyrIlePhePhe 3161150 : TAAAAGTGTTTGTatcaaaatatatatatttttc : 3161184 vulgar: NvOr85 251 382 . KQ414646.1 3160720 3161184 + 138 M 38 114 G 1 0 M 41 123 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160721 3161184 138 + . gene_id 3 ; sequence NvOr85 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3160721 3160959 . + . KQ414646.1 exonerate:protein2genome:local exon 3160721 3160959 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3160960 3160961 . + . intron_id 1 ; splice_site "tt" KQ414646.1 exonerate:protein2genome:local intron 3160960 3161033 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3161032 3161033 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3161034 3161184 . + . KQ414646.1 exonerate:protein2genome:local exon 3161034 3161184 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160721 3161184 138 + . alignment_id 3 ; Query NvOr85 ; Align 3160721 252 114 ; Align 3160835 291 123 ; Align 3161035 333 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr85 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 252 -> 333 Target range: 3155805 -> 3156048 253 : LysTyrAlaLysValValThrGluThrPheAspValValIleValGluGlnPhePh : 271 !:!!:!.!! :!!:!!!.!||| !|||!!::!!!.!||| !! |||||| ArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAl 3155806 : AGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGC : 3155860 272 : eAlaGlyAlaLeuIlePheSerValIleIleTyrValLeuThrIleGlyLysValP : 290 !.!.!!.!!||| .!.!!! !!! !:!!|||:!!|||||| !..! ! ||| aValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValT 3155861 : GGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGA : 3155917 291 : roIleLeuGlnLysLeuMetSerValGlyTyrLeuIleCysMetLeuGlyGluLeu : 308 !! :!!::! ! :!! ! !:!! !||| !! !||||||||| !:!!:!! hrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIle 3155918 : CGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATA : 3155971 309 : PheAlaTyrCysTrpPheGlyAsnGluIleThrLeuLysSerLeuGluPheSerAs : 327 ||| !|||||||||!:!|||||||||:!!! !|||||| !! ! ! ||| !! ! PheIleTyrCysTrpTyrGlyAsnGluValLysLeuLysValSerTyrPheArgHi 3155972 : TTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAGGTTTCTTATTTTCGACA : 3156028 328 : pAspIleTyrLysIleAsp : 333 ! ! !||| !:!!:!! sCysSerTyrLeuLeuAsn 3156029 : TTGTTCATATTTGCTAAAT : 3156048 vulgar: NvOr85 252 333 . KQ414646.1 3155805 3156048 + 129 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155806 3156048 129 + . gene_id 4 ; sequence NvOr85 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155806 3156048 . + . KQ414646.1 exonerate:protein2genome:local exon 3155806 3156048 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155806 3156048 129 + . alignment_id 4 ; Query NvOr85 ; Align 3155806 253 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr84INT Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 307 -> 368 Target range: 3161019 -> 3161363 308 : ThrIleTyrArgIleAspTrpThrLeuLeuSerAlaGluAlaSerArgHisLeuLe : 326 |||:!!!:!..!! !:!!|||||| !|||||| !....!!!.!!:! ||||| ThrValPheGluSerAsnTrpThrAlaLeuSerGlnSerThrLysLysThrLeuLe 3161020 : ACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCT : 3161074 327 : uPheIleMetLeuArgThrSerLysProIleValMetSerCysGlyHisPheValV : 345 | ||||||||||||:!!! !|||||||||! !.!.!!! !!!.! ! !! !! uThrIleMetLeuArgSerLeuLysProIleGluPheThrGlyAlaPheValPheP 3161075 : GACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTTCC : 3161131 346 : alLeuAsnValGluSerPheLysSer >>>> Target Intron 1 >>>> I : 354 !:!!|||:!!||||||||||||||| 161 bp : roValAsnLeuGluSerPheLysSer++ ++L 3161132 : CCGTAAATTTGGAGTCTTTTAAAAGTgt.........................agT : 3161319 355 : leLeuLysValSerTyrSerAlaPheAsnPheLeuLysGluSer : 368 !::!!|||..!|||||||||!.!|||||| ! :!!:!!:!!!!! euValLysThrSerTyrSerValPheAsnValIleGlnGlnThr 3161320 : TGGTGAAAACTTCCTATTCGGTATTCAACGTAATCCAGCAAACG : 3161363 vulgar: NvOr84INT 307 368 . KQ414646.1 3161019 3161363 + 106 M 46 138 5 0 2 I 0 157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3161020 3161363 106 + . gene_id 1 ; sequence NvOr84INT ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3161020 3161157 . + . KQ414646.1 exonerate:protein2genome:local exon 3161020 3161157 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3161158 3161159 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3161158 3161318 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3161317 3161318 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3161319 3161363 . + . KQ414646.1 exonerate:protein2genome:local exon 3161319 3161363 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3161020 3161363 106 + . alignment_id 1 ; Query NvOr84INT ; Align 3161020 308 138 ; Align 3161319 354 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr84INT Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 307 -> 368 Target range: 3175230 -> 3175574 308 : ThrIleTyrArgIleAspTrpThrLeuLeuSerAlaGluAlaSerArgHisLeuLe : 326 |||:!!!:!..!! !:!!|||||| !|||||| !....!!!.!!:! ||||| ThrValPheGluSerAsnTrpThrAlaLeuSerGlnSerThrLysLysThrLeuLe 3175231 : ACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCT : 3175285 327 : uPheIleMetLeuArgThrSerLysProIleValMetSerCysGlyHisPheValV : 345 | ||||||||||||:!!! !|||||||||! !.!.!!! !!!.! ! !! !! uThrIleMetLeuArgSerLeuLysProIleGluPheThrGlyAlaPheValPheP 3175286 : GACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTTCC : 3175342 346 : alLeuAsnValGluSerPheLysSer >>>> Target Intron 1 >>>> I : 354 !:!!|||:!!||||||||||||||| 161 bp : roValAsnLeuGluSerPheLysSer++ ++L 3175343 : CCGTAAATTTGGAGTCTTTTAAAAGTgt.........................agT : 3175530 355 : leLeuLysValSerTyrSerAlaPheAsnPheLeuLysGluSer : 368 !::!!|||..!|||||||||!.!|||||| ! :!!:!!:!!!!! euValLysThrSerTyrSerValPheAsnValIleGlnGlnThr 3175531 : TGGTGAAAACTTCCTATTCGGTATTCAACGTAATCCAGCAAACG : 3175574 vulgar: NvOr84INT 307 368 . KQ414646.1 3175230 3175574 + 106 M 46 138 5 0 2 I 0 157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3175231 3175574 106 + . gene_id 2 ; sequence NvOr84INT ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3175231 3175368 . + . KQ414646.1 exonerate:protein2genome:local exon 3175231 3175368 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3175369 3175370 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3175369 3175529 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3175528 3175529 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3175530 3175574 . + . KQ414646.1 exonerate:protein2genome:local exon 3175530 3175574 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3175231 3175574 106 + . alignment_id 2 ; Query NvOr84INT ; Align 3175231 308 138 ; Align 3175530 354 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr84INT Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 1 -> 121 Target range: 3149023 -> 3149383 2 : MetArgLysLeuThrPheAlaPheLysValLeuSerMetCysGlyValTrpLeuPr : 20 ||| !! ||| ! ||||||!!.:!!|||!!!!!:|||||| !||| !|| MetAlaIleLeuArgProAlaPheAsnIleLeuThrIleCysGlyCysTrpArgPr 3149024 : ATGGCTATCTTACGGCCAGCTTTCAACATACTGACGATCTGCGGATGCTGGAGGCC : 3149078 21 : oValAspTrpThrSerProArgArgIlePheTyrTyrLysIlePheSerCysValV : 39 | !...!! !!!! !!||| !! ! |||! :!!!:!!!! !!| oCysSerCysArgThrThrArgAlaLysAlaAlaTyrIleValTyrThrMetPheV 3149079 : GTGCTCGTGCCGAACGACACGCGCCAAGGCCGCGTACATCGTTTACACGATGTTCG : 3149135 40 : alLeuIleAlaCysTyrThrIleValThrLeuGlnCysLeuLeuLeuSerValThr : 57 ||:!!:!! !! :!!!:!.!! !! ||| ... ::: !:!!!.! alValLeuLeuLeuHisSerPheCysIleSerGlnPhePheAsnValIleLeuAsn 3149136 : TGGTACTTTTATTGCACAGCTTCTGCATctcgcaatttttcaacgtgatACTGAAC : 3149189 58 : GluPheAspPheSerPheIleAlaAspIleLeuPheThrPheLeuThrSerIleTh : 76 ! ..! :!:::!!!:! !!!!!:!! !|||:!!.!!|||:!! LeuArgThrAlaAspGluLeuSerGluSerPheTyrMetPheIleAlaSerValLe 3149190 : TTGAGAACGGCGGACGAGCTGAGCGAGAGTTTCTACATGTTCATCGCGTCCGTTCT : 3149246 77 : rValCysThrLysThrMetAsnPheIleAlaLysArgProAspValIleArgLeuA : 95 ! !||| !|||! !:!:!...!.:!:.!!!!.!.! !..!:!! ! !||| uSerCysCysLysIleValThrLeuLeuThrAsnHisGlySerIleGluIleLeuA 3149247 : GTCCTGCTGCAAGATCGTCACGCTGCTGACGAACCACGGAAGCATCGAGATCCTCC : 3149303 96 : laAspMetLeuLeuLeuGlyCysCysLeuProArgAspLysGluGluAlaAlaIle : 113 ! ! ||| ! !! ! ||| !||| !..! |||||||||!.!||| rgArgArgLeuGluGluGluProCysLysProValSerAlaGluGluAlaValIle 3149304 : GGAGGAGACTGGAGGAGGAGCCGTGTAAACCTGTGAGCGCCGAGGAGGCTGTCATA : 3149357 114 : GlnLysGlnCysAspGluPheIle : 121 |||!..:!!! !|||..! !||| GlnSerLysPheAspArgAsnIle 3149358 : CAGAGTAAATTCGACAGAAACATC : 3149383 vulgar: NvOr84INT 1 121 . KQ414646.1 3149023 3149383 + 102 M 120 360 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3149024 3149383 102 + . gene_id 3 ; sequence NvOr84INT ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3149024 3149383 . + . KQ414646.1 exonerate:protein2genome:local exon 3149024 3149383 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3149024 3149383 102 + . alignment_id 3 ; Query NvOr84INT ; Align 3149024 2 360 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr82 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 325 Query range: 0 -> 218 Target range: 3149023 -> 3150329 1 : MetArgValLeuProIleThrPheGlyIleLeuThrValCysGlyPheTrpArgPr : 19 ||| !:!!|||! ! !.!!|||..!|||||||||:!!||||||! !|||||||| MetAlaIleLeuArgProAlaPheAsnIleLeuThrIleCysGlyCysTrpArgPr 3149024 : ATGGCTATCTTACGGCCAGCTTTCAACATACTGACGATCTGCGGATGCTGGAGGCC : 3149078 20 : oIleSerLeuGluSerSerIleProLysGlnMetTyrAsnCysTyrSerIlePheM : 38 | !|||! !..!!!!!!! ! !!||| !|||! ! !|||!!!!!:|||: oCysSerCysArgThrThrArgAlaLysAlaAlaTyrIleValTyrThrMetPheV 3149079 : GTGCTCGTGCCGAACGACACGCGCCAAGGCCGCGTACATCGTTTACACGATGTTCG : 3149135 39 : etCysPheLeuIleTyrThrPheThrLeuSerHisLeuIleAspIleValIleSer : 56 !! .!!|||:!::!!!:!||| !:!:|||.........::::::::!:!:!:! alValLeuLeuLeuHisSerPheCysIleSerGlnPhePheAsnValIleLeuAsn 3149136 : TGGTACTTTTATTGCACAGCTTCTGCATctcgcaatttttcaacgtgatACTGAAC : 3149189 57 : AlaAlaAspPheGluSerLeuThrGlySerCysPheMetLeuLeuSerMetMetAs : 75 ! ! !!:..!|||!:!! !|||! !!:!|||!!!:!!:!! :!: LeuArgThrAlaAspGluLeuSerGluSerPheTyrMetPheIleAlaSerValLe 3149190 : TTGAGAACGGCGGACGAGCTGAGCGAGAGTTTCTACATGTTCATCGCGTCCGTTCT : 3149246 76 : nValCysCysLysMetThrAsnIleLeuTyrPheArgLysAsnIleValGluLeuL : 94 !|||||||||!!:..!!..:!:||| !!.! !!:!|||! ! |||! uSerCysCysLysIleValThrLeuLeuThrAsnHisGlySerIleGluIleLeuA 3149247 : GTCCTGCTGCAAGATCGTCACGCTGCTGACGAACCACGGAAGCATCGAGATCCTCC : 3149303 95 : euGlnIleLeuAlaSerAspHisCysThrAlaLysAspValValGluArgAspIle : 112 !::!! !|||! !..!!!:! |||! ! !! !..!!.!! !||| !! !||| rgArgArgLeuGluGluGluProCysLysProValSerAlaGluGluAlaValIle 3149304 : GGAGGAGACTGGAGGAGGAGCCGTGTAAACCTGTGAGCGCCGAGGAGGCTGTCATA : 3149357 113 : GluLysLysPheHisLysArgAla{Ar} >>>> Target Intron 1 >>>> : 121 :!!!..|||||| !!!:!!.! !{ !} 649 bp GlnSerLysPheAspArgAsnIle{Gl}++ + 3149358 : CAGAGTAAATTCGACAGAAACATC{GG}gt.........................a : 3150033 122 : {g}SerValThrLeuCysTyrTrpIleLeuThrGluThrThrCysMetLeuIleT : 139 {!}|||||||||:!!! !||| !||||||..!||| !||| !:!:! !!!:! +{y}SerValThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCysMetI 3150034 : g{G}TCGGTGACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTGTATGA : 3150087 140 : hrLeuArgThrPhePheGlySer<->SerLysGlnIleLeuProPheLysAlaTrp : 156 !||| !:!!!!..!!|||..! !:!:!!!:! !||| !!!:!!:!|||||| leLeuSerSerLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgAlaTrp 3150088 : TCCTCTCTTCGTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAGCCTGG : 3150141 157 : IleProTyrGluIleThrGlyLeuAlaValTyrTrpThrThrPhePheHisGlnTh : 175 :!:|||!:!!!: !:!! !! !.!! !|||!::! !.!!!:! !!||||||! LeuProPheAspTyrSerLeuProThrTyrTyrTyrIleAlaTyrValHisGlnIl 3150142 : CTGCCCTTCGATTACTCTCTGCCAACTTACTATTACATCGCGTACGTTCATCAGAT : 3150198 176 : rIleAlaHisValAlaAlaAlaAsnLeuGlnIleAlaAsnGluThrLeuIleCysG : 194 !:!!|||! :!!!.!.!!:!! !! !.!.:!!||| !!!:..!:!!||||||| eValAlaLeuIleGlyThrSerLeuSerAsnValAlaCysAspValIleIleCysG 3150199 : CGTCGCGCTGATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCATCTGCG : 3150255 195 : lyLeuMetIleGlnAlaCysSerGlnLeuGluIleLeuLysTyrArgLeuLysLys : 212 |||||:!::!!!!.||||||.!!|||! !||||||||||||:!!|||:!!|||:!! lyLeuLeuValHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMetLysGlu 3150256 : GGTTGCTCGTTCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATGAAGGAG : 3150309 213 : IleProAspGluSerLys : 218 !!: !!.!.|||..!!:! MetThrGlnGluGlnArg 3150310 : ATGACGCAGGAACAGAGG : 3150329 vulgar: NvOr82 0 218 . KQ414646.1 3149023 3150329 + 325 M 120 360 S 0 2 5 0 2 I 0 645 3 0 2 S 1 1 M 25 75 G 0 3 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3149024 3150329 325 + . gene_id 1 ; sequence NvOr82 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3149024 3149385 . + . KQ414646.1 exonerate:protein2genome:local exon 3149024 3149385 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3149386 3149387 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3149386 3150034 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150033 3150034 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150035 3150329 . + . KQ414646.1 exonerate:protein2genome:local exon 3150035 3150329 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3149024 3150329 325 + . alignment_id 1 ; Query NvOr82 ; Align 3149024 1 360 ; Align 3150036 122 75 ; Align 3150114 147 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr82 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 261 Query range: 254 -> 390 Target range: 3164980 -> 3165539 255 : GluPheSerGluLysLeuAsnSerThrPheAsnValIleLeuPheValGlnPheAl : 273 ..!||||||:!!|||:!!|||..! !|||!!.:!!||||||.!! !||||||.. ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3164981 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3165035 274 : aIleSerSerLeuValLeuCysSerSerValTyrLeuLeuSerLysMetLysLeuV : 292 !||||||! !! !|||:!!|||! !!:!:!!|||! !:!!!!!:!!!!:|||:!! sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMet- 3165036 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATG- : 3165092 293 : alSerValHisPheMetSerLeuSerLeuTyrLeuSerCysMetLeuTyrGlnIle : 310 ...... |||:::...::: !||||||! !! !|||! :!! |||||| --AspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 3165093 : --GAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 3165143 311 : PheLeuPheCysTrpTyrGlyAsnGluValIleLeuGln >>>> Target Int : 324 |||! !!:!|||||||||||||||||||||! !! !:!! 80 bp PheTyrTyrCysTrpTyrGlyAsnGluValLysHisLys++ 3165144 : TTTTACTATTGCTGGTACGGCAACGAAGTGAAACATAAGgt............... : 3165187 325 : ron 1 >>>> SerLeuAspLeuGlyAsnAlaValTyrHisMetAspTrpThrIl : 338 ||||||.!.||| ! !! !:!!!:!|||! ||||||||| ++SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSe 3165188 : ..........agAGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTC : 3165307 339 : eLeuSerThrGluAspLysLysLysLeuLeuIleValIleLeuLeuValArgLysP : 357 !|||!:!!.!.!.! !! !:! !|||||||||:!!!!: !! !!.! !!:!| rLeuAsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgP 3165308 : TTTGAACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGC : 3165364 358 : roIleGlnPheThrSerSerPheLeuValSerLeuSerIleGluSerTyrCysLys : 375 |||||:!!|||||||||! ! !:!!||||||:!!!:!:!!||||||!:! ! roIleGluPheThrSerIleHisValValSerValAsnLeuGluSerPheMetAla 3165365 : CAATAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCA : 3165418 376 : >>>> Target Intron 2 >>>> IleLeuLysThrSerTyrSerValPhe : 384 74 bp :!!:!!|||||||||||||||!.!||| ++ ++ValIleLysThrSerTyrSerAlaPhe 3165419 : gt.........................agGTAATAAAAACTTCGTACTCCGCGTTC : 3165519 385 : AsnLeuLeuGlnArgThr : 390 |||:!!:!!|||!:!!:! AsnMetIleGlnGlnSer 3165520 : AACATGATCCAACAAAGC : 3165539 vulgar: NvOr82 254 390 . KQ414646.1 3164980 3165539 + 261 M 37 111 G 1 0 M 31 93 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164981 3165539 261 + . gene_id 2 ; sequence NvOr82 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3164981 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164981 3165184 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3165185 3165186 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165185 3165264 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3165263 3165264 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165265 3165420 . + . KQ414646.1 exonerate:protein2genome:local exon 3165265 3165420 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165421 3165422 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165421 3165494 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3165493 3165494 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165495 3165539 . + . KQ414646.1 exonerate:protein2genome:local exon 3165495 3165539 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164981 3165539 261 + . alignment_id 2 ; Query NvOr82 ; Align 3164981 255 111 ; Align 3165092 293 93 ; Align 3165265 324 156 ; Align 3165495 376 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr82 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 232 Query range: 253 -> 390 Target range: 3160720 -> 3161363 254 : IleGluPheSerGluLysLeuAsnSerThrPheAsnValIleLeuPheValGlnPh : 272 .!!..!|||:!!|||! :!!|||:!!! !|||!:!:!!! :!! !..!||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3160721 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3160775 273 : eAlaIleSerSerLeuValLeuCysSerSerValTyrLeuLeuSerLysMetLysL : 291 | !:!:!!!!!!:!!..!:!!|||! !!:!:!!!:!! !|||!!!:!!! |||: eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3160776 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3160832 292 : euValSerValHisPheMetSerLeuSerLeuTyrLeuSerCysMetLeuTyrGln : 309 !! !||| !!. !!:!::!!|||! !! !!:!:!! ! !!:!!!!! ||| alTyrSer---GlnValLeuAlaLeuIleProPheMetValSerValPheAlaGln 3160833 : TGTATTCG---CAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAG : 3160883 310 : IlePheLeuPheCysTrpTyrGlyAsnGluValIleLeuGln >>>> Target : 324 ||||||! !! !||||||||||||||||||..!! !:!!:!! 74 IlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys++ 3160884 : ATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGgt............ : 3160930 325 : Intron 1 >>>> SerLeuAspLeuGlyAsnAlaValTyrHisMetAspTrpTh : 337 bp ||||||!!::!! !!:!!.!!|||!:!.!.! :!!||||| ++SerLeuGluIleCysAspThrValPheGluSerAsnTrpTh 3160931 : .............agAGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGAC : 3161041 338 : rIleLeuSerThrGluAspLysLysLysLeuLeuIleValIleLeuLeuValArgL : 356 | !|||||| !... !||||||! !||||||! :!!!!:|||! ! ! !| rAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuL 3161042 : GGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGA : 3161098 357 : ysProIleGlnPheThrSerSerPheLeuValSerLeuSerIleGluSerTyrCys : 374 ||||||||:!!||||||.!!:!!|||:!! !! !!:!!!:!:!:||||||!:! ysProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSerPheLys 3161099 : AGCCAATAGAATTCACCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAA : 3161152 375 : Lys >>>> Target Intron 2 >>>> IleLeuLysThrSerTyrSerVal : 383 !.. 161 bp :!::!!|||||||||||||||||| Ser++ ++LeuValLysThrSerTyrSerVal 3161153 : AGTgt.........................agTTGGTGAAAACTTCCTATTCGGTA : 3161340 384 : PheAsnLeuLeuGlnArgThr : 390 ||||||:!!:!!|||!:!||| PheAsnValIleGlnGlnThr 3161341 : TTCAACGTAATCCAGCAAACG : 3161363 vulgar: NvOr82 253 390 . KQ414646.1 3160720 3161363 + 232 M 40 120 G 1 0 M 29 87 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160721 3161363 232 + . gene_id 3 ; sequence NvOr82 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3160721 3160927 . + . KQ414646.1 exonerate:protein2genome:local exon 3160721 3160927 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3160928 3160929 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3160928 3161001 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3161000 3161001 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3161002 3161157 . + . KQ414646.1 exonerate:protein2genome:local exon 3161002 3161157 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3161158 3161159 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3161158 3161318 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3161317 3161318 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3161319 3161363 . + . KQ414646.1 exonerate:protein2genome:local exon 3161319 3161363 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160721 3161363 232 + . alignment_id 3 ; Query NvOr82 ; Align 3160721 254 120 ; Align 3160841 295 87 ; Align 3161002 324 156 ; Align 3161319 376 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr82 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 218 Query range: 253 -> 390 Target range: 3174931 -> 3175574 254 : IleGluPheSerGluLysLeuAsnSerThrPheAsnValIleLeuPheValGlnPh : 272 .!!..!|||:!!|||! :!!|||:!!! !|||!:!:!!! :!! !..!||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3174932 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3174986 273 : eAlaIleSerSerLeuValLeuCysSerSerValTyrLeuLeuSerLysMetLysL : 291 | !:!:!!!!!!:!!..!:!!|||! !!:!:!!!:!! !|||!!!:!!! |||: eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3174987 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3175043 292 : euValSerValHisPheMetSerLeuSerLeuTyrLeuSerCysMetLeuTyrGln : 309 !! !||| !!. !!:!::!!|||! !! !!:!:!! ! !!:!!!!! ||| alTyrSer---GlnValLeuAlaLeuIleProPheMetValSerValPheAlaGln 3175044 : TGTATTCG---CAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAG : 3175094 310 : IlePheLeuPheCysTrpTyrGlyAsnGluValIleLeuGln >>>> Target : 324 ||||||! !! !||||||||||||||||||..!! !:!!:!! 74 IlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys++ 3175095 : ATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGgt............ : 3175141 325 : Intron 1 >>>> SerLeuAspLeuGlyAsnAlaValTyrHisMetAspTrpTh : 337 bp ||||||!!::!! !!:!!.!!|||!:!.!.! :!!||||| ++SerLeuGluIleCysAspThrValPheGluSerAsnTrpTh 3175142 : .............agAGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGAC : 3175252 338 : rIleLeuSerThrGluAspLysLysLysLeuLeuIleValIleLeuLeuValArgL : 356 | !|||||| !... !||||||! !||||||! :!!!!:|||! ! ! !| rAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuL 3175253 : GGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGA : 3175309 357 : ysProIleGlnPheThrSerSerPheLeuValSerLeuSerIleGluSer{T} > : 373 ||||||||:!!||||||.!!:!!|||:!! !! !!:!!!:!:!:||||||{|} ysProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSer{T}-+ 3175310 : AGCCAATAGAATTCACCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCT{T}tt. : 3175363 374 : >>> Target Intron 2 >>>> {yr}<->CysLysIleLeuLysThrSerTy : 381 158 bp {||} ! :!!:!::!!||||||||||| +-{yr}GlnSerGlnLeuValLysThrSerTy 3175364 : ........................at{aT}CAATCGCAGTTGGTGAAAACTTCCTA : 3175545 382 : rSerValPheAsnLeuLeuGlnArgThr : 390 |||||||||||||:!!:!!|||!:!||| rSerValPheAsnValIleGlnGlnThr 3175546 : TTCGGTATTCAACGTAATCCAGCAAACG : 3175574 vulgar: NvOr82 253 390 . KQ414646.1 3174931 3175574 + 218 M 40 120 G 1 0 M 29 87 5 0 2 I 0 70 3 0 2 M 49 147 S 0 1 5 0 2 I 0 154 3 0 2 S 1 2 G 0 3 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174932 3175574 218 + . gene_id 4 ; sequence NvOr82 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3174932 3175138 . + . KQ414646.1 exonerate:protein2genome:local exon 3174932 3175138 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3175139 3175140 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3175139 3175212 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3175211 3175212 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3175213 3175360 . + . KQ414646.1 exonerate:protein2genome:local exon 3175213 3175360 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3175361 3175362 . + . intron_id 2 ; splice_site "TT" KQ414646.1 exonerate:protein2genome:local intron 3175361 3175518 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3175517 3175518 . + . intron_id 1 ; splice_site "at" KQ414646.1 exonerate:protein2genome:local cds 3175519 3175574 . + . KQ414646.1 exonerate:protein2genome:local exon 3175519 3175574 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3174932 3175574 218 + . alignment_id 4 ; Query NvOr82 ; Align 3174932 254 120 ; Align 3175052 295 87 ; Align 3175213 324 147 ; Align 3175524 374 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr82 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 254 -> 376 Target range: 3158452 -> 3158895 255 : GluPheSerGluLysLeuAsnSerThrPheAsnValIleLeuPheValGlnPheAl : 273 ..!||||||:!!|||:!!|||..! !|||!!.:!!||||||.!! !||||||.. ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3158453 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3158507 274 : aIleSerSerLeuValLeuCysSerSerValTyrLeuLeuSerLysMetLysLeuV : 292 !||||||! !! !|||:!!|||! !!:!:!!|||! !:!!!!!:!!!!:|||:!! sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMet- 3158508 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATG- : 3158564 293 : alSerValHisPheMetSerLeuSerLeuTyrLeuSerCysMetLeuTyrGlnIle : 310 ...... |||:::...::: !||||||! !! !|||! :!! |||||| --AspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 3158565 : --GAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 3158615 311 : PheLeuPheCysTrpTyrGlyAsnGluValIleLeuGlnSerLeuAspLeuGly{A : 329 |||! !!:!|||||||||||||||||||||! ! !:!! ! ! !!! ! {: PheTyrTyrCysTrpTyrGlyAsnGluValLysAspLysValAspHisCysHis{A 3158616 : TTTTACTATTGTTGGTACGGCAACGAAGTGAAAGATAAGGTTGATCATTGTcac{g : 3158672 330 : } >>>> Target Intron 1 >>>> {sn}AlaValTyrHisMetAspTrpT : 337 } 80 bp {!!} !:!!!:!|||! ||||||| }-+ +-{sp}MetIlePheHisSerAspTrpT 3158673 : }at.........................at{AC}ATGATATTTCACAGCGACTGGA : 3158776 338 : hrIleLeuSerThrGluAspLysLysLysLeuLeuIleValIleLeuLeuValArg : 355 || !|||!:!!.!.!.! !! !:! !|||||||||:!!!!: !! !!.! ! hrSerLeuAsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaVal 3158777 : CGTCTTTGAACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTG : 3158830 356 : LysProIleGlnPheThrSerSerPheLeuValSerLeuSerIleGluSerTyrCy : 374 !:!||||||:!!|||||||||! ! !:!!||||||:!!!:!:!!||||||!:! ArgProIleGluPheThrSerIleHisValValSerValAsnLeuGluSerPheMe 3158831 : AGGCCAATAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCAT : 3158887 375 : sLysIle : 376 !:!! tAlaVal 3158888 : GGCAGTC : 3158895 vulgar: NvOr82 254 376 . KQ414646.1 3158452 3158895 + 205 M 37 111 G 1 0 M 36 108 S 0 1 5 0 2 I 0 76 3 0 2 S 1 2 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158453 3158895 205 + . gene_id 5 ; sequence NvOr82 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3158453 3158672 . + . KQ414646.1 exonerate:protein2genome:local exon 3158453 3158672 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3158673 3158674 . + . intron_id 1 ; splice_site "at" KQ414646.1 exonerate:protein2genome:local intron 3158673 3158752 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3158751 3158752 . + . intron_id 0 ; splice_site "AT" KQ414646.1 exonerate:protein2genome:local cds 3158753 3158895 . + . KQ414646.1 exonerate:protein2genome:local exon 3158753 3158895 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3158453 3158895 205 + . alignment_id 5 ; Query NvOr82 ; Align 3158453 255 111 ; Align 3158564 293 108 ; Align 3158755 330 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr82 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 186 Query range: 252 -> 323 Target range: 3178378 -> 3178591 253 : IleIleGluPheSerGluLysLeuAsnSerThrPheAsnValIleLeuPheValGl : 271 ||| ...|||!!!:!!! !:!!|||!!!..!|||.!. !!!::!!|||:!!|| IleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLeuGl 3178379 : atttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCTGCA : 3178433 272 : nPheAlaIleSerSerLeuValLeuCysSerSerValTyrLeuLeuSerLysMetL : 290 ||||:!!||||||||| !|||||||||! !|||:!!||| !:!!|||! !!!:! nPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrIleA 3178434 : ATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGATTA : 3178490 291 : ysLeuValSerValHisPheMetSerLeuSerLeuTyrLeuSerCysMetLeuTyr : 308 !.! ! !!|||:!!:!!|||:!:!!!! !:!!! !||||||!!!||||||||| snProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeuThr 3178491 : ATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACG : 3178544 309 : GlnIlePheLeuPheCysTrpTyrGlyAsnGluValIleLeuGln : 323 |||:!:!:!|||!:!||||||!:!||||||||||||! |||:!! GlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys 3178545 : CAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: NvOr82 252 323 . KQ414646.1 3178378 3178591 + 186 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178379 3178591 186 + . gene_id 6 ; sequence NvOr82 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178379 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178379 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178379 3178591 186 + . alignment_id 6 ; Query NvOr82 ; Align 3178379 253 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr82 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 254 -> 323 Target range: 3155805 -> 3156012 255 : GluPheSerGluLysLeuAsnSerThrPheAsnValIleLeuPheValGlnPheAl : 273 ..!|||!!!! ! !:!!|||..! !|||.!.:!! :!!|||..!|||||||| ArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAl 3155806 : AGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGC : 3155860 274 : aIleSerSerLeuValLeuCysSerSerValTyrLeuLeuSerLysMetLysLeuV : 292 |:!:|||!!!|||!.!:!!|||! !!:!:!!|||||||||!!! ! ! :!!. aValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValT 3155861 : GGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGA : 3155917 293 : alSerValHisPheMetSerLeuSerLeuTyrLeuSerCysMetLeuTyrGlnIle : 310 .! !!:!!...!:!:!!..!:!!! !:!!||| !|||||||||||| |||||| hrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIle 3155918 : CGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATA : 3155971 311 : PheLeuPheCysTrpTyrGlyAsnGluValIleLeuGln : 323 |||:!!!:!|||||||||||||||||||||! |||:!! PheIleTyrCysTrpTyrGlyAsnGluValLysLeuLys 3155972 : TTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAG : 3156012 vulgar: NvOr82 254 323 . KQ414646.1 3155805 3156012 + 180 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155806 3156012 180 + . gene_id 7 ; sequence NvOr82 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155806 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155806 3156012 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155806 3156012 180 + . alignment_id 7 ; Query NvOr82 ; Align 3155806 255 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr82 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 119 -> 213 Target range: 3177904 -> 3178189 120 : AlaArgSerValThrLeuCysTyrTrpIleLeuThrGluThrThrCysMetLeuIl : 138 :!!|||!.!:!!|||:!!! !! ! !||||||!.!|||:!!.!!....!.||| SerArgLysLeuThrIleTyrCysGluIleLeuAsnGluSerAlaAlaPheLeuAl 3177905 : TCCAGAAAACTGACAATCTACTGCGAGATCCTGAACGAATCCGCCGCATTCTTAGC : 3177959 139 : eThrLeuArgThrPhePheGlySerSerLys<->GlnIleLeuProPheLysAlaT : 156 !|||:!! ! !!:! !! !! !! !::: :!!! !||||||.!....! !| aThrValAlaGlnTyrAsnGluPheIleArgSerLysThrLeuProIleSerAspT 3177960 : TACGGTAGCACAGTACAACGAATTCATACGCTCCAAGACTTTGCCAATATCCGACT : 3178016 157 : rpIleProTyrGluIleThrGlyLeuAlaValTyrTrpThrThrPhePheHisGln : 174 ||:!:||||||!!::!::!!..!! ! !:!!||| !! !:!!.!.!!.|||||| rpValProTyrAspLeuSerSerGlnLysLeuTyrThrIleSerLeuLeuHisGln 3178017 : GGGTGCCTTACGATTTGTCCTCGCAAAAATTGTACACGATATCTCTGTTGCATCAA : 3178070 175 : ThrIleAlaHisValAlaAlaAlaAsnLeuGlnIleAlaAsnGluThrLeuIleCy : 193 ||||||!.!! :!!!.!..!|||||| !...:!:||||||||||||||||||.. ThrIleGlyLeuMetValCysAlaAsnThrSerValAlaAsnGluThrLeuIleAl 3178071 : ACGATAGGCCTGATGGTCTGTGCGAACACCAGCGTGGCAAACGAAACACTTATCGC : 3178127 194 : sGlyLeuMetIleGlnAlaCysSerGlnLeuGluIleLeuLysTyrArgLeuLysL : 212 .|||||||||||||||||| !!:!!|||!!!||||||!!! :!!||| !!:!! aGlyLeuMetIleGlnAlaGlyAlaGlnPheGluIlePheCysHisArgAlaArgA 3178128 : AGGGCTGATGATACAAGCTGGCGCGCAATTCGAGATATTTTGCCATCGAGCGAGAA : 3178184 213 : ysIle : 213 !.:!! snLeu 3178185 : ATCTA : 3178189 vulgar: NvOr82 119 213 . KQ414646.1 3177904 3178189 + 158 M 29 87 G 0 3 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3177905 3178189 158 + . gene_id 8 ; sequence NvOr82 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3177905 3178189 . + . KQ414646.1 exonerate:protein2genome:local exon 3177905 3178189 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3177905 3178189 158 + . alignment_id 8 ; Query NvOr82 ; Align 3177905 120 87 ; Align 3177995 149 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr82 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 119 -> 215 Target range: 3155397 -> 3155685 120 : AlaArgSerValThrLeuCysTyrTrpIleLeuThrGluThrThrCysMetLeuIl : 138 ..!|||!!! !:!! !! !||| !||||||..!|||:!!||| ||| !:! CysArgArgSerSerThrTyrTyrAlaIleLeuValGluSerThrValMetThrLe 3155398 : TGCAGAAGAAGCTCAACCTATTACGCGATTCTGGTCGAATCGACGGTGATGACTTT : 3155452 139 : eThrLeuArgThrPhePheGlySerSerLysGlnIleLeuProPheLysAlaTrpI : 157 ::!!!!! !!.!!.!.!!. ! !!..!..!!:: !||||||!:!::! !|||: uSerPheGlyAlaLeuLeuLysProGluSerArgProLeuProTyrArgIleTrpL 3155453 : GTCTTTCGGTGCACTGTTGAAACCAGAATCACGTCCTTTACCGTATCGAATTTGGC : 3155509 158 : leProTyrGluIleThrGlyLeuAlaValTyrTrpThrThrPhePheHisGlnThr : 175 !!|||! !.!. !||| !||| !..!|||!! :!!! !!:! !! !||| ! euProCysAsnTyrThrProLeuIleThrTyrCysSerIleTyrThrLeuGlnCys 3155510 : TACCTTGCAATTACACCCCGTTAATTACTTACTGTTCGATTTACACTCTCCAATGT : 3155563 176 : IleAlaHisValAlaAlaAlaAsnLeuGlnIleAlaAsnGluThrLeuIleCysGl : 194 :!:|||! !!.! !::!|||! :!!!!.:!!||| !!!:!:!||||||||||| ValAlaLeuAlaLeuSerAlaMetMetHisValAlaCysAspSerLeuIleCysGl 3155564 : GTGGCACTCGCTCTAAGCGCTATGATGCACGTCGCCTGCGACAGTTTGATCTGCGG : 3155620 195 : yLeuMetIleGlnAlaCysSerGlnLeuGluIleLeuLysTyrArgLeuLysLysI : 213 ||||:!!:!!!!..!!! !.!!|||:!!||||||||| ! !||||||||| | yLeuLeuLeuHisThrTyrGlyGlnIleGluIleLeuGlyCysArgLeuLysThrI 3155621 : CCTGCTGTTACACACTTACGGCCAGATCGAGATCCTCGGTTGTCGTCTGAaaacga : 3155677 214 : leProAsp : 215 || ::: leLysGlu 3155678 : taaaagaa : 3155685 vulgar: NvOr82 119 215 . KQ414646.1 3155397 3155685 + 145 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155398 3155685 145 + . gene_id 9 ; sequence NvOr82 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155398 3155685 . + . KQ414646.1 exonerate:protein2genome:local exon 3155398 3155685 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155398 3155685 145 + . alignment_id 9 ; Query NvOr82 ; Align 3155398 120 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr82 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 0 -> 118 Target range: 3159620 -> 3159974 1 : MetArgValLeuProIleThrPheGlyIleLeuThrValCysGlyPheTrpArgPr : 19 |||!.!..!|||! !:!::!!!!. !! !||||||:!!||||||!:! ||||| MetHisThrLeuGlnLeuSerLeuLysThrLeuThrIleCysGlyTyrIleArgPr 3159621 : ATGCACACGTTGCAATTGTCGTTGAAAACTTTGACGATTTGCGGCTACATAAGGCC : 3159675 20 : oIleSerLeuGluSerSerIleProLysGlnMetTyrAsnCysTyrSerIlePheM : 38 |! !|||! !:!!||| !! ! !|||! :!:|||||| :!!!!!:!! !: oThrSerTrpLysSerProGlyLeuLysLeuLeuTyrAsnValHisThrValThrV 3159676 : AACATCGTGGAAGTCACCGGGGCTAAAGCTTCTCTATAACGTACACACGGTTACTG : 3159732 39 : etCysPheLeuIleTyrThrPheThrLeuSerHisLeuIleAspIleValIleSer : 56 !: ! :!!:!! !|||||| !:!!:!!!!.:!!:!:||||||:::...::: alValValValLeuSerThrPhePheValAlaGlnIleLeuAspIleIlePheAsn 3159733 : TAGTGGTAGTTCTTAGCACGTTTTTCGTCGCCCAGATATTggacattattttcaac : 3159786 57 : AlaAlaAspPheGluSerLeuThrGlySerCysPheMetLeuLeuSerMetMetAs : 75 ...! !:!! !!:..!!!!!:!! !!:!! !! !!!: !! !!!!:!!||||| ValGluAsnGlnAspGluPheSerAspAsnPheCysIleThrCysCysValMetAs 3159787 : gtgGAGAATCAAGACGAGTTTAGCGACAATTTCTGCATAACGTGCTGCGTGATGAA : 3159843 76 : nValCysCysLysMetThrAsnIleLeuTyrPheArgLysAsnIleValGluLeuL : 94 | ! ! ! |||:!! !!:!:!:||| |||:!!! ||| !.!.|||: nSerLeuGlyLysLeuTyrSerLeuLeuIleGlyArgGluMetIleGlnAsnLeuI 3159844 : CAGCCTTGGAAAGTTGTACAGCTTGCTGATAGGACGAGAAATGATCCAAAATTTAA : 3159900 95 : euGlnIleLeuAlaSerAspHisCysThrAlaLysAspValValGluArgAspIle : 112 !!.!. ||| !||||||! ! !! ! !! !|||! !||||||!.!!!:||| leAspSerLeuGlnSerAspProLeuArgProLeuAspGluValGluAsnGluIle 3159901 : TAGACTCGCTACAAAGTGACCCTCTTAGGCCGTTGGACGAAGTGGAGAATGAAATT : 3159954 113 : GluLysLysPheHisLys : 118 ..! !!:! !.!.||| ArgLeuArgHisGluLys 3159955 : CGATTGAGACACGAGAAG : 3159974 vulgar: NvOr82 0 118 . KQ414646.1 3159620 3159974 + 142 M 118 354 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3159621 3159974 142 + . gene_id 10 ; sequence NvOr82 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3159621 3159974 . + . KQ414646.1 exonerate:protein2genome:local exon 3159621 3159974 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3159621 3159974 142 + . alignment_id 10 ; Query NvOr82 ; Align 3159621 1 354 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr82 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 250 -> 320 Target range: 3180448 -> 3180658 251 : ArgArgIleIleGluPheSerGluLysLeuAsnSerThrPheAsnValIleLeuPh : 269 ||| ! ! !...!!.:!!|||! !:!!|||..!!:!.!..!.:!!! :!!|| ArgPheCysCysSerLeuAlaGluIleMetAsnAspSerLeuGlnLeuThrMetPh 3180449 : CGATTCTGTTGCAGTTTAGCTGAAATAATGAACGACAGTCTACAGCTGACGATGTT : 3180503 270 : eValGlnPheAlaIleSerSerLeuValLeuCysSerSerValTyrLeuLeuSerL : 288 |!.!|||||| ! !|||! !:!!|||:!!||| !|||:!! !! !|||! !! eAlaGlnPhePheGlySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuA 3180504 : CGCCCAGTTTTTCGGAAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAA : 3180560 289 : ysMetLysLeuValSerValHisPheMetSerLeuSerLeuTyrLeuSerCysMet : 306 !. ! :!!:!!|||..!.!.|||:!::!! !! ...||||||||| ::: snAlaAspIleLeuSerThrGluPheLeuAlaThrIlePheTyrLeuSerSerIle 3180561 : ACGCAGATATTCTCAGCACCGAATTCTTAGCGACGAtattttatctgagctcgatA : 3180614 307 : LeuTyrGlnIlePheLeuPheCysTrpTyrGlyAsnGluVal : 320 ||| |||! !||||||!:!||||||||||||||||||||| LeuLeuGlnSerPheLeuTyrCysTrpTyrGlyAsnGluVal 3180615 : CTGCTGCAGAGCTTTCTTTACTGTTGGTACGGAAACGAAGTG : 3180658 vulgar: NvOr82 250 320 . KQ414646.1 3180448 3180658 + 139 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180449 3180658 139 + . gene_id 11 ; sequence NvOr82 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180449 3180658 . + . KQ414646.1 exonerate:protein2genome:local exon 3180449 3180658 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180449 3180658 139 + . alignment_id 11 ; Query NvOr82 ; Align 3180449 251 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr82 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 259 -> 325 Target range: 3150616 -> 3150814 260 : LeuAsnSerThrPheAsnValIleLeuPheValGlnPheAlaIleSerSerLeuVa : 278 :!!.!...!! !|||!.. !|||:!! !||||||.!! ! |||!!!||||| MetGlnGluLysPheArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuVa 3150617 : ATGCAAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGGT : 3150671 279 : lLeuCysSerSerValTyrLeuLeuSerLysMetLysLeuValSerValHisPheM : 297 |:!!|||! !! !:!!||| !|||:!!!!.! ! ! !:!!||| ! ! !:!: lValCysPheIleLeuTyrGluLeuAlaAsnThrProProIleSerSerLysTyrL 3150672 : AGTGTGTTTCATCCTGTACGAATTGGCGAACACGCCTCCAATCAGCTCCAAGTACC : 3150728 298 : etSerLeuSerLeuTyrLeuSerCysMetLeuTyrGlnIlePheLeuPheCysTrp : 315 !!..!!!! !|||||||||:!!||||||:!! |||||||||!!!!:!|||||| euGlnPheValLeuTyrLeuAlaCysMetMetThrGlnIlePhePheTyrCysTrp 3150729 : TGCAATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATCTTCTTTTACTGCTGG : 3150782 316 : TyrGlyAsnGluValIleLeuGlnSerLeu : 325 ||||||.!.:!!:!!! !|||:!! !||| TyrGlyGluGlnLeuLysLeuLysValLeu 3150783 : TACGGCGAGCAGTTGAAACTGAAGGTACTG : 3150814 vulgar: NvOr82 259 325 . KQ414646.1 3150616 3150814 + 132 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150617 3150814 132 + . gene_id 12 ; sequence NvOr82 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150617 3150814 . + . KQ414646.1 exonerate:protein2genome:local exon 3150617 3150814 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150617 3150814 132 + . alignment_id 12 ; Query NvOr82 ; Align 3150617 260 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr82 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 123 -> 216 Target range: 3157797 -> 3158079 124 : ThrLeuCysTyrTrpIleLeuThrGluThrThrCysMetLeuIleThrLeuArgTh : 142 |||:!! !!||||||! ||| ::: .!.!!!||| !:!!|||:! ThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrValArgSe 3157798 : ACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATATACGTGAGATC : 3157852 143 : r<->PhePheGlySerSerLysGlnIleLeuProPheLysAlaTrpIleProTyrG : 160 ! !!..!.! !! !|||!!.::!! !||| !|||::!|||||||||||||||! rLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrA 3157853 : GCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACG : 3157909 161 : luIleThrGlyLeuAlaValTyrTrpThrThrPhePheHisGlnThrIleAlaHis : 178 !: !:!! ! ! !!:!!!:! !|||! ! !!||||||.!!|||||| spTyrSerProAlaProIlePheIleLeuThrSerValHisGlnAlaIleAlaSer 3157910 : ATTACTCCCCTGCGCCCATTTTTATCCTTACCTCCGTCCATCAAGCTATAGCCTCG : 3157963 179 : ValAlaAlaAlaAsnLeuGlnIleAlaAsnGluThrLeuIleCysGlyLeuMetIl : 197 ..! !..!..!!.!! ! :!!.!! !!:|||||| ! !||||||:!!|| ThrIleCysCysThrSerThrValThrValAspThrLeuTyrThrGlyLeuLeuIl 3157964 : ACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTATACACTGGCTTGTTGAT : 3158020 198 : eGlnAlaCysSerGlnLeuGluIleLeuLysTyrArgLeuLysLysIleProAspG : 216 |.!. !! !!!!|||!!!|||||||||:!!:!!||||||!:!!!.:!! ! !| eAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysThrG 3158021 : TAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAACTG : 3158077 217 : lu : 216 || lu 3158078 : AG : 3158079 vulgar: NvOr82 123 216 . KQ414646.1 3157797 3158079 + 129 M 19 57 G 0 3 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157798 3158079 129 + . gene_id 13 ; sequence NvOr82 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3157798 3158079 . + . KQ414646.1 exonerate:protein2genome:local exon 3157798 3158079 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157798 3158079 129 + . alignment_id 13 ; Query NvOr82 ; Align 3157798 124 57 ; Align 3157858 143 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr82 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 250 -> 319 Target range: 3153441 -> 3153645 251 : ArgArgIleIleGluPheSerGluLysLeuAsnSerThrPheAsnValIleLeuPh : 269 :::||| :!! !!!.:!!:!!! !:!!|||..!! !.!!... !:!!! ! LysArgTyrVal***LeuAlaGlnIleValAsnGluLysLeuGlyAsnValSerSe 3153442 : aaacgatacgTTTGATTGGCGCAAATAGTGAACGAGAAGCTTGGAAATGTCTCGAG : 3153496 270 : eValGlnPheAlaIleSerSerLeuValLeuCysSerSerValTyrLeuLeuSerL : 288 !:!!|||||||||||||||!!! !!.!:!!|||! !!:!:!!|||! !:!!||| rIleGlnPheAlaIleSerThrGlyAlaIleCysPheAsnLeuTyrArgMetSerV 3153497 : TATACAGTTCGCGATAAGCACAGGAGCGATATGCTTCAATCTCTATCGAATGTCGG : 3153553 289 : ysMetLysLeuValSerValHisPheMetSerLeuSerLeuTyrLeuSerCysMet : 306 !!!::!!|||! ! !! ! ! ! :!!|||!!!:!! :!! |||:!: alIleGluLeuGlyProLysPheValGluAlaLeuThrIleThrVal---CysLeu 3153554 : TGATAGAACTCGGTCCAAAGTTTGTGGAAGCGTTAACTATCACAGTA---TGCTTA : 3153604 307 : LeuTyrGlnIlePheLeuPheCysTrpTyrGlyAsnGlu : 319 ||| |||||||||! !!:!|||||||||||||||::: LeuAlaGlnIlePheTyrTyrCysTrpTyrGlyAsnAsp 3153605 : CTCGCGCAGATATTTTACTATTGTTGGTAcggtaacgat : 3153645 vulgar: NvOr82 250 319 . KQ414646.1 3153441 3153645 + 106 M 53 159 G 1 0 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153442 3153645 106 + . gene_id 14 ; sequence NvOr82 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153442 3153645 . + . KQ414646.1 exonerate:protein2genome:local exon 3153442 3153645 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3153442 3153645 106 + . alignment_id 14 ; Query NvOr82 ; Align 3153442 251 159 ; Align 3153601 305 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr82 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 260 Query range: 254 -> 390 Target range: 1946251 -> 1945692 255 : GluPheSerGluLysLeuAsnSerThrPheAsnValIleLeuPheValGlnPheAl : 273 ..!||||||:!!|||:!!|||..! !|||!!.:!!||||||.!! !||||||.. ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 1946251 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 1946197 274 : aIleSerSerLeuValLeuCysSerSerValTyrLeuLeuSerLysMetLysLeuV : 292 !||||||! !! !|||:!!|||! !!:!:!!|||! !:!!!!!:!!!!:|||:!! sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMet- 1946196 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATG- : 1946140 293 : alSerValHisPheMetSerLeuSerLeuTyrLeuSerCysMetLeuTyrGlnIle : 310 ...... |||:::...::: !||||||! !! !|||! :!! |||||| --AspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 1946139 : --GAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 1946089 311 : PheLeuPheCysTrpTyrGlyAsnGluValIleLeuGln >>>> Target Int : 324 |||! !!:!|||||||||||||||||||||! ! !:!! 80 bp PheTyrTyrCysTrpTyrGlyAsnGluValLysAspLys++ 1946088 : TTTTACTATTGCTGGTACGGCAACGAAGTGAAAGATAAGgt............... : 1946045 325 : ron 1 >>>> SerLeuAspLeuGlyAsnAlaValTyrHisMetAspTrpThrIl : 338 ||||||.!.||| ! !! !:!!!:!|||! ||||||||| ++SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSe 1946044 : ..........agAGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTC : 1945925 339 : eLeuSerThrGluAspLysLysLysLeuLeuIleValIleLeuLeuValArgLysP : 357 !|||!:!!.!.!.! !! !:! !|||||||||:!!!!: !! !!.! !!:!| rLeuAsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgP 1945924 : TTTGAACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGC : 1945868 358 : roIleGlnPheThrSerSerPheLeuValSerLeuSerIleGluSerTyrCysLys : 375 |||||:!!|||||||||! ! !:!!||||||:!!!:!:!!||||||!:! ! roIleGluPheThrSerIleHisValValSerValAsnLeuGluSerPheMetAla 1945867 : CAATAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCA : 1945814 376 : >>>> Target Intron 2 >>>> IleLeuLysThrSerTyrSerValPhe : 384 74 bp :!!:!!|||||||||||||||!.!||| ++ ++ValIleLysThrSerTyrSerAlaPhe 1945813 : gt.........................agGTAATAAAAACTTCGTACTCCGCGTTC : 1945713 385 : AsnLeuLeuGlnArgThr : 390 |||:!!:!!|||!:!!:! AsnMetIleGlnGlnSer 1945712 : AACATGATCCAACAAAGC : 1945693 vulgar: NvOr82 254 390 . KQ414661.1 1946251 1945692 - 260 M 37 111 G 1 0 M 31 93 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945693 1946251 260 - . gene_id 1 ; sequence NvOr82 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1946048 1946251 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946251 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local splice5 1946046 1946047 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945968 1946047 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1945968 1945969 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945812 1945967 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1945967 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945693 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945693 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945693 1946251 260 - . alignment_id 1 ; Query NvOr82 ; Align 1946252 255 111 ; Align 1946141 293 93 ; Align 1945968 324 156 ; Align 1945738 376 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr82 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 133 Query range: 123 -> 216 Target range: 1946906 -> 1946624 124 : ThrLeuCysTyrTrpIleLeuThrGluThrThrCysMetLeuIleThrLeuArgTh : 142 |||:!! !!||||||! ||| ::: .!.!!!||| !:!!|||:! ThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrValArgSe 1946906 : ACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATATACGTGAGATC : 1946852 143 : r<->PhePheGlySerSerLysGlnIleLeuProPheLysAlaTrpIleProTyrG : 160 ! !!..!.! !! !|||!!.::!! !||| !|||::!|||||||||||||||! rLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrA 1946851 : GCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACG : 1946795 161 : luIleThrGlyLeuAlaValTyrTrpThrThrPhePheHisGlnThrIleAlaHis : 178 !: !:!! ! ! !!:!!!:! !|||||| !!||||||.!!|||||| spTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAlaIleAlaAla 1946794 : ATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCG : 1946741 179 : ValAlaAlaAlaAsnLeuGlnIleAlaAsnGluThrLeuIleCysGlyLeuMetIl : 197 ..! !..!..!!.!! !...:!!.!! !!::!!||| ! !||||||:!!|| ThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLeuIl 1946740 : ACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTGAT : 1946684 198 : eGlnAlaCysSerGlnLeuGluIleLeuLysTyrArgLeuLysLysIleProAspG : 216 |.!. !! !!!!|||!!!|||||||||:!!:!!||||||!:!!!.:!! ! !| eAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnValLysThrG 1946683 : TAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTTAAAACTG : 1946627 217 : lu : 216 || lu 1946626 : AG : 1946625 vulgar: NvOr82 123 216 . KQ414661.1 1946906 1946624 - 133 M 19 57 G 0 3 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946625 1946906 133 - . gene_id 2 ; sequence NvOr82 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946625 1946906 . - . KQ414661.1 exonerate:protein2genome:local exon 1946625 1946906 . - . insertions 3 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1946625 1946906 133 - . alignment_id 2 ; Query NvOr82 ; Align 1946907 124 57 ; Align 1946847 143 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr92 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 173 Query range: 257 -> 385 Target range: 1946233 -> 1945698 258 : LysLysThrPheSerSerAlaIleIleGlyGlnTyrIleValSerSerLeuValIl : 276 !!.:!! !|||!.! ! !:!:|||..!|||!:! !:!!|||! !! !||||| AsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIl 1946233 : AACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGAT : 1946179 277 : eSerThrSerValTyrGlnLeuSerThrAsnThrThrMetAspValValPhePheT : 295 |!!! !!:!:!!|||!:!:!! |||.!.! !! !||||||... ||| eCysPheAsnLeuTyrArgMet---ThrGlnIleLysMetAspThrLysPheValG 1946178 : CTGCTTCAATCTTTACCGAATG---ACACAGATCAAAATGGAcacgaaattcgtcg : 1946125 296 : hrAsnLeuLeuTyrLeuMetCysMetLeuLeuGluPhePheLeuTyrCysTrpPhe : 313 :!!||||||! !.!.|||! :!! !:!!.!.|||! !|||||||||!:! luIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyr 1946124 : aaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTAC : 1946071 314 : GlyAsnGluLeuThrValLys >>>> Target Intron 1 >>>> SerGlu : 322 |||||||||:!!! !! !||| 80 bp ||| GlyAsnGluValLysAspLys++ ++SerLeu 1946070 : GGCAACGAAGTGAAAGATAAGgt.........................agAGCCTC : 1945964 323 : AspPheGlyArgLysValPheArgThrAsnTrpLeuAlaLeuSerThrLysSerAs : 341 .!..!! ! !! !:!!|||!.!!:!:!!||| !:!!|||!:!!.!!!. !!. GlnLeuProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAsnValTh 1945963 : CAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAACGTCAC : 1945907 342 : nLysAspIlePheValAlaMetLeuArgSerSerLysProIleIleValSerThrG : 360 !!:!! :!!!!.:!! !||| !|||:!! !!:!|||||| !!!!!!:! rArgAlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheThrSerI 1945906 : CAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCACCAGTA : 1945850 361 : lyPhePheAlaValLeuSerLeuGluSerPheMetLys >>>> Target Intr : 373 ! ! !!!.! !:!!!:!||||||||||||||| ! 74 bp leHisValValSerValAsnLeuGluSerPheMetAla++ 1945849 : TTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt................ : 1945809 374 : on 2 >>>> IleIleLysLeuSerPheSerAlaPheAsnValLeuArg : 385 :!!|||||| !|||!:!||||||||||||:!!:!!!:! ++ValIleLysThrSerTyrSerAlaPheAsnMetIleGln 1945808 : .........agGTAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAA : 1945699 vulgar: NvOr92 257 385 . KQ414661.1 1946233 1945698 - 173 M 26 78 G 1 0 M 36 108 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945699 1946233 173 - . gene_id 1 ; sequence NvOr92 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1946048 1946233 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946233 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local splice5 1946046 1946047 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945968 1946047 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1945968 1945969 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945812 1945967 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1945967 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945699 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945699 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945699 1946233 173 - . alignment_id 1 ; Query NvOr92 ; Align 1946234 258 78 ; Align 1946156 285 108 ; Align 1945968 321 156 ; Align 1945738 373 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr92 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 118 -> 223 Target range: 1946921 -> 1946606 119 : PheIleArgTyrValThrLeuSerSerLeuValLeuValGluIleThrAlaIleTh : 137 |||.!!|||!:: !|||:!!.!!! !! ! |||::: |||:::..!.!! PhePheArgTrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePh 1946921 : TTTTTTAGATGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTT : 1946867 138 : rPheLeuIleProProPhePheGlnProGluAsnAsnArgThrLeuProPheLysI : 156 !.!.! !:!: ! !!.!!!!. ! ! !:!||||||! !||| !|||::! eIleTyrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgA 1946866 : TATATACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAG : 1946810 157 : leTrpLeuProTyrAspTyrSerMetAspLysLeuPheTrpIleThrTyrPhePro : 174 !|||:!!||||||||||||||| ! :!!||| :!!|||!:! !!! ! laTrpIleProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHis 1946809 : CATGGATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCAT : 1946756 175 : GluSerIleThrIleIleLeuAlaSerLeuIleSerValSerSerAsnThrLeuIl : 193 :!!:!!|||.!! ! :!!..!!!! ! ||||||!!! !:!!:!!||| GlnAlaIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTy 1946755 : CAAGCTATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATA : 1946699 194 : ePheGlyPheLeuIleGluAlaCysGlyGlnPheGluLeuLeuAsnHisArgPheM : 212 ! !|||!!.||||||.!. !! ! !!|||||||||:!!|||.!.||||||.!.! rThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuA 1946698 : CACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAA : 1946642 213 : etThrMetProLeuTyrIleGluAspPheAlaLys : 223 !!.!:!: ! ! ! !!:|||! !!.!||| rgAsnValLysThrGluGlnAspAspSerValLys 1946641 : GGAACGTTAAAACTGAGCAGGATGACTCTGTGAAG : 1946607 vulgar: NvOr92 118 223 . KQ414661.1 1946921 1946606 - 139 M 105 315 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946607 1946921 139 - . gene_id 2 ; sequence NvOr92 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946607 1946921 . - . KQ414661.1 exonerate:protein2genome:local exon 1946607 1946921 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1946607 1946921 139 - . alignment_id 2 ; Query NvOr92 ; Align 1946922 119 315 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr81 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 177 Query range: 120 -> 216 Target range: 1946915 -> 1946627 121 : ArgArgAsnThrValTrpTyrMetAlaLeuIleGlnSerSerValPheMetIleTh : 139 ||| !!||||||:!! ! ||| !:::|||::: |||..!|||.!.||| ArgTrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTy 1946915 : AGATGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATATA : 1946861 140 : rLeuGlnSerIlePheIleAsnIleProGlnLysThrLeuProPheProAlaTrpL : 158 !:!!::!|||:!!!!.|||:!!.!! !.!.!:!! !||| !|||! !||||||: rValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpI 1946860 : CGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGA : 1946804 159 : euProTyrAsnTyrSerAsnThrArgLeuTyrAlaIleSerTyrThrHisGlnVal : 176 !!||||||:!!|||||| !.!!! !:!!!:! !:!!!!!!:!..!||||||!.! leProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAla 1946803 : TACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCT : 1946750 177 : IleGlyAsnAlaAlaSerAlaThrLeuHisAlaAlaAsnAspAlaLeuIleSerGl : 195 |||!.! .!! !!!!..!|||! ! !!.!.!! |||:!!||| !!!!|| IleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGl 1946749 : ATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGG : 1946693 196 : yIleMetLeuGlnIleCysAlaGlnLeuGluIleLeuLysHisArgIleLeuLysL : 214 |:!::!!:!!.!.|||! !..!|||!!!|||||||||:!!||||||:!! !!!.: yLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnV 1946692 : CTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACG : 1946636 215 : euProThr : 216 !! !||| alLysThr 1946635 : TTAAAACT : 1946628 vulgar: NvOr81 120 216 . KQ414661.1 1946915 1946627 - 177 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946628 1946915 177 - . gene_id 1 ; sequence NvOr81 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946628 1946915 . - . KQ414661.1 exonerate:protein2genome:local exon 1946628 1946915 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1946628 1946915 177 - . alignment_id 1 ; Query NvOr81 ; Align 1946916 121 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr93 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 251 -> 317 Target range: 1946251 -> 1946056 252 : LysPheAlaGluAsnIleAsnValIlePheThrProValIleLeuValGlnPheCy : 270 !:!|||:!!:!!!!.:!:|||! ! !|||! !! !:!!:!::!! !|||||||| ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 1946251 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 1946197 271 : sMetSerSerIleValLeuSerLeuSerValTyrGlnLeuAlaValArgSerAlaA : 289 |!!:|||! ! |||:!!!!!!!!!:!:!!|||!:!:!! ..!!:!! ! !! sIleSerMetSerValIleCysPheAsnLeuTyrArgMet---ThrGlnIleLysM 1946196 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATG---ACACAGATCAAAA : 1946143 290 : snGlyIleGlnPheIleThrMetValMetTyrLeuThrCysMetLeuValGlnPhe : 307 ! :::|||::: ::::!!:!:|||! ! !|||! :!!..!|||.!. etAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 1946142 : TGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 1946089 308 : PheMetTyrCysTrpPheGlyAsnGluVal : 317 ||| |||||||||!:!|||||||||||| PheTyrTyrCysTrpTyrGlyAsnGluVal 1946088 : TTTTACTATTGCTGGTACGGCAACGAAGTG : 1946057 vulgar: NvOr93 251 317 . KQ414661.1 1946251 1946056 - 125 M 32 96 G 1 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946057 1946251 125 - . gene_id 1 ; sequence NvOr93 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946057 1946251 . - . KQ414661.1 exonerate:protein2genome:local exon 1946057 1946251 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946057 1946251 125 - . alignment_id 1 ; Query NvOr93 ; Align 1946252 252 96 ; Align 1946156 285 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr91PSE Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 154 Query range: 246 -> 342 Target range: 1946134 -> 1945692 247 : GluPheTyrMetMetLeuPheTyrLeuSerSerValMetThrGlnLeuPheLeuPh : 265 :::||| ::::!!.!!|||! !! !!!!..!!!:||||||:!!|||! !!: LysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTy 1946134 : aaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTA : 1946080 266 : eCysTrpPheGlyAsnGluLeuMetIleArg >>>> Target Intron 1 >> : 276 !||||||!:!|||||||||:!!! !!:! 80 bp rCysTrpTyrGlyAsnGluValLysAspLys++ 1946079 : TTGCTGGTACGGCAACGAAGTGAAAGATAAGgt....................... : 1946045 277 : >> SerGlnGluLeuGluThrThrIleLeuGluSerAspTrpThrThrLeuSerL : 293 |||! :!!||| ! !! !|||!!!.!.||||||||||||:!!|||!:! ++SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSerLeuAsnA 1946044 : ..agAGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACA : 1945916 294 : euGlnSerThrArgSerIleLeuLeuIleSerLeuArgThrSerLysProIleLeu : 311 !.!. !||||||:!!:!!|||:!!!!:! ! !|||.!! !!:!|||||| ! snAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgProIleGlu 1945915 : ACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAG : 1945862 312 : IleSerArgGlyTyrPheValProPheSerLeuGluThrPheLysArg >>>> T : 328 .!!!!!!!! !:!! !!||| !! ! !:!||||||:!!|||! ! ! PheThrSerIleHisValValSerValAsnLeuGluSerPheMetAla++ 1945861 : TTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt...... : 1945809 329 : arget Intron 2 >>>> IleLeuLysValSerTyrThrAlaPheAsnGluLe : 339 74 bp :!!:!!|||..!||||||:!!||||||||| !:! ++ValIleLysThrSerTyrSerAlaPheAsnMetIl 1945808 : ...................agGTAATAAAAACTTCGTACTCCGCGTTCAACATGAT : 1945704 340 : uArgAspSer : 342 !!:!.!.||| eGlnGlnSer 1945703 : CCAACAAAGC : 1945693 vulgar: NvOr91PSE 246 342 . KQ414661.1 1946134 1945692 - 154 M 29 87 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945693 1946134 154 - . gene_id 1 ; sequence NvOr91PSE ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1946048 1946134 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946134 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1946046 1946047 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945968 1946047 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1945968 1945969 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945812 1945967 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1945967 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945693 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945693 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945693 1946134 154 - . alignment_id 1 ; Query NvOr91PSE ; Align 1946135 247 87 ; Align 1945968 276 156 ; Align 1945738 328 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr89 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 138 Query range: 259 -> 324 Target range: 1946248 -> 1946056 260 : IleAlaGluThrValAsnGluIlePheLysSerValIlePheGlnGlnPheCysVa : 278 .!!:!!:!!! !||||||||| !|||||| !:!!:!:.!!...|||||||||:! PheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIl 1946248 : TTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCAT : 1946194 279 : lSerSerIleValValSerAlaSerIlePheGlnLeuSerThrLysProAspThrL : 297 !|||! ! |||:!!!!! !!:!:!!!:!!:!:!! |||:!! ! ! ! ! eSerMetSerValIleCysPheAsnLeuTyrArgMet---ThrGlnIleLysMetA 1946193 : AAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATG---ACACAGATCAAAATGG : 1946140 298 : ysThrGluPheIleMetValLeuPheTyrSerIleCysLeuLeuValGluLeuPhe : 315 ! |||:::|||::: ::::!!.!!||||||.!!||| !:!!..!:!!:!!||| spThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePhe 1946139 : AcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTT : 1946086 316 : IleTyrCysTrpPheGlyAsnLysLeu : 324 !|||||||||!:!||||||:!!:!! TyrTyrCysTrpTyrGlyAsnGluVal 1946085 : TACTATTGCTGGTACGGCAACGAAGTG : 1946057 vulgar: NvOr89 259 324 . KQ414661.1 1946248 1946056 - 138 M 31 93 G 1 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946057 1946248 138 - . gene_id 1 ; sequence NvOr89 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946057 1946248 . - . KQ414661.1 exonerate:protein2genome:local exon 1946057 1946248 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946057 1946248 138 - . alignment_id 1 ; Query NvOr89 ; Align 1946249 260 93 ; Align 1946156 292 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr89 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 327 -> 396 Target range: 1948618 -> 1948278 328 : SerLeuAsnPheHisGlnAlaValTyrAspAlaAspTrpThrValLeuSerAsnGl : 346 ||||||.!..!! !.!. !:!!!:! !! !||||||||| !!!!..!!!.! SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 1948618 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 1948564 347 : uSerGlyLysAspLeuMetPheIleMetMetArgAlaSerLysProIleIleMetT : 365 !!! !::!:!!:!!:!: !!!:|||||||||||||||..!|||||| !!!: aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 1948563 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 1948507 366 : yrCysGlyHisPheIleValLeuSerLeuGluThrPheLeuSer >>>> Targe : 380 ! !!! !!.! ! :!! !:!!!:!|||!!::!!|||:!!:!! leSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 1948506 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.......... : 1948460 381 : t Intron 1 >>>> IleLeuLysValSerTyrSerValPheAsnValLeuArg : 392 133 bp :!:||||||..!|||||||||!.!!:!|||||||||!:! ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGln 1948459 : ...............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAA : 1948293 393 : ArgSerHisGly : 396 |||.!!.!.||| ArgGlyGluGly 1948292 : CGCGGCGAAGGC : 1948279 vulgar: NvOr89 327 396 . KQ414661.1 1948618 1948278 - 109 M 52 156 5 0 2 I 0 129 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948279 1948618 109 - . gene_id 2 ; sequence NvOr89 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1948463 1948618 . - . KQ414661.1 exonerate:protein2genome:local exon 1948463 1948618 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1948461 1948462 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1948330 1948462 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1948330 1948331 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1948279 1948329 . - . KQ414661.1 exonerate:protein2genome:local exon 1948279 1948329 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948279 1948618 109 - . alignment_id 2 ; Query NvOr89 ; Align 1948619 328 156 ; Align 1948330 380 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr89 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 131 -> 222 Target range: 1946906 -> 1946633 132 : ThrLeuValCysPheValLeuValAsnValThrMetValAsnMetValThrThrPr : 150 |||:!!! !! !!:: |||::: :::::: ! !! !!!: !..!! ! ! ThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrValArgSe 1946906 : ACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATATACGTGAGATC : 1946852 151 : oLeuPheLeuLysAlaAspGluArgIleLeuProMetLysValTrpLeuProTyrS : 169 !|||!!.:!! ! !..!.!.|||! !||| !.!.::!!.!|||:!!||||||. rLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrA 1946851 : GCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACG : 1946795 170 : erIleGluThrAspPhePheTyrTrpLeuSerTyrMetHisGlnThrLeuGlyVal : 187 .! !... !!! !.!!!:! |||!!!!:!:!:||||||.!!:!!!.!!.! spTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAlaIleAlaAla 1946794 : ATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCG : 1946741 188 : ThrLeuValGlySerGlyIleIleGlySerThrLeuLeuIleAsnGlyPheValTy : 206 |||:!! ! !!!!!..!! !:!! ! ! !! !||| !!.!|||!!.:!! ThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLeuIl 1946740 : ACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTGAT : 1946684 207 : rGlnValCysCysGlnPheGluIleLeuSerSerArgLeuGluLysLeu : 222 !.!.:!!! !||||||||||||||||||..! !||||||..!!!.:!! eAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnVal 1946683 : TAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTT : 1946634 vulgar: NvOr89 131 222 . KQ414661.1 1946906 1946633 - 102 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946634 1946906 102 - . gene_id 3 ; sequence NvOr89 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946634 1946906 . - . KQ414661.1 exonerate:protein2genome:local exon 1946634 1946906 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1946634 1946906 102 - . alignment_id 3 ; Query NvOr89 ; Align 1946907 132 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr86 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 120 -> 211 Target range: 1946906 -> 1946633 121 : ThrLeuValCysPheValLeuValAsnIleThrMetMetAsnLeuLeuValLeuPr : 139 |||:!!! !! !!:: |||::: |||::: !.!. !:!!! !||| ! ! ThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrValArgSe 1946906 : ACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATATACGTGAGATC : 1946852 140 : oLeuValThrAsnGlyGluAsnArgThrLeuProMetAsnValTrpLeuProTyrP : 158 !|||:!!! !:!! !...||||||! !||| !.!....!.!|||:!!|||||| rLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrA 1946851 : GCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACG : 1946795 159 : roValAspSerAspAlaSerTyrTrpLeuThrTyrThrHisGlnThrLeuGlyThr : 176 ! !..! !!! !!! !!:! ||||||!:!..!||||||.!!:!!!.!.!! spTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAlaIleAlaAla 1946794 : ATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCG : 1946741 177 : LeuLeuLeuGlyThrGlyAlaValGlySerThrLeuMetIleAsnGlyPheMetHi : 195 !:!!! ! !!|||..!::!||| ! ! !! !:!: !!.!|||!!.:!! ThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLeuIl 1946740 : ACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTGAT : 1946684 196 : sGlnValCysCysGlnPheGluIleLeuSerSerArgPheGlnLysLeu : 211 !.!.:!!! !||||||||||||||||||..! !|||.!.::!!!.:!! eAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnVal 1946683 : TAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTT : 1946634 vulgar: NvOr86 120 211 . KQ414661.1 1946906 1946633 - 112 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946634 1946906 112 - . gene_id 1 ; sequence NvOr86 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946634 1946906 . - . KQ414661.1 exonerate:protein2genome:local exon 1946634 1946906 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1946634 1946906 112 - . alignment_id 1 ; Query NvOr86 ; Align 1946907 121 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr86 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 316 -> 382 Target range: 1948618 -> 1948287 317 : SerLeuHisPheGlnThrSerValTyrGlnIleAspTrpThrAlaLeuSerIleGl : 335 ||||||.!..!!...!.!! !:!!!:!!!.:!!||||||||| !!!!!..!! !!. SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 1948618 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 1948564 336 : ySerGlyLysAspLeuValPheIleMetMetArgAlaSerLysProValIleMetT : 354 !!!! !::!:!!:!!:!! !!!:|||||||||||||||..!|||:!! !!!: aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 1948563 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 1948507 355 : yrCysGlyHisPheIleIleLeuSerLeuGluSerTyrLeuGly >>>> Targe : 369 ! !!! !!.! ! :!! !:!!!:!|||!!:|||!:!:!!!.! leSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 1948506 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.......... : 1948460 370 : t Intron 1 >>>> IleLeuLysAlaSerTyrSerValPheAsnIleLeuArg : 381 133 bp :!:||||||.!!|||||||||!.!!:!|||:!!|||!:! ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGln 1948459 : ...............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAA : 1948293 382 : Arg : 382 ||| Arg 1948292 : CGC : 1948288 vulgar: NvOr86 316 382 . KQ414661.1 1948618 1948287 - 103 M 52 156 5 0 2 I 0 129 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948288 1948618 103 - . gene_id 2 ; sequence NvOr86 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1948463 1948618 . - . KQ414661.1 exonerate:protein2genome:local exon 1948463 1948618 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1948461 1948462 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1948330 1948462 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1948330 1948331 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1948288 1948329 . - . KQ414661.1 exonerate:protein2genome:local exon 1948288 1948329 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948288 1948618 103 - . alignment_id 2 ; Query NvOr86 ; Align 1948619 317 156 ; Align 1948330 369 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr80 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 201 Query range: 28 -> 211 Target range: 1947298 -> 1946645 29 : AlaLeuTyrThrLeuTyrSerIleLeuSerPheThrValTyrTyrThrPheLeuIl : 47 :!!||||||!.!:!!|||.!!:::...|||||| ::: !!:!.!!:!!:! SerLeuTyrAsnIleTyrGlyValPheSerPheLeuLeuLeuSerSerLeuValLe 1947298 : TCTTTGTACAATATCTACGGGGtgttctcctttcttcttctaagCAGCCTCGTCCT : 1947244 48 : eSerGlnIleLeuAspIleValLeuLeuAlaGluAsnIleGlnGlnIleThrGluA : 66 !|||||||||||||||:!!!.!:!! !!.!|||!:! .!..!..!!!:::::| uSerGlnIleLeuAspValAlaIleAsnValGluSerGlnAspAspPheSerAspA 1947243 : CTCGCAAATATTAGACGTAGCGATCAACGTGGAGAGCCAGGATGACTTCAgtgaca : 1947187 67 : snMetIleGlnLeuIleAsnValValAsnValSerGlnLysSerLeuCysPhePhe : 84 ||... ! ! ||| !! !..!!!! ||| !! ! !.!..!! snPheSerValThrAlaValValPheLeuThrTrpPheLysLeuSerIleLeuLeu 1947186 : atttttctgtcaCCGCTGTGGTGTTTCTCACGTGGTTCAAGCTTTCCATCCTACTC : 1947133 85 : LeuLysArgLysLysIleIleArgPheMetAspTyrPhePheGluAspMetThrLe : 103 :!!::!||| !!!..!!||| !.!.!!:||| .!! .!. ! ! !! IleArgArgGlyAsnPheIlePheLeuIleAspThrLeuGlnAsnLysProPheSe 1947132 : ATACGACGTGGAAACTTTATATTTCTGATCGATACGCTTCAGAACAAGCCGTTTTC : 1947076 104 : uProGlnSerProArgGluLysGluIleGlnLysSerPheAspAspGluSer{Ly} : 121 !||| !..! !!..!|||!!.||||||::! !!.!|||!!: ! !!!{:!} rProValAspThrGluGluAsnGluIleArgAlaLysPheGluLysIleThr{Gl} 1947075 : ACCTGTGGACACGGAAGAGAACGAGATTAGAGCGAAATTCGAGAAGATCACC{GA} : 1947022 122 : >>>> Target Intron 1 >>>> {s}GlyAsnSerGlnLysLeuPheVal : 129 107 bp {!} !!|||!!! ! !!:: ++ ++{u}TrpAsnThrIleGlyTyrTrpSer 1947021 : gt.........................ag{A}TGGAACACGATTGGCTACTGGAGt : 1946891 130 : LeuTyrSerValSerValValMetTyrValTyrMetProPhePheIleSerLysAr : 148 ||| :::||| ..!.!.!:!:!!|||:!! !! .!!:!:! ! ! LeuLeuLeuIleSer---ThrPhePheIleTyrValArgSerLeuLeuIleAspPh 1946890 : ttactattaatttct---acGTTCTTTATATACGTGAGATCGCTTTTGATAGATTT : 1946837 149 : gGluAspArgValLeuProTyrArgAlaTrpArgProTyrSerLeuAspAsnValA : 167 !...:!!||| !||| !!:!|||||||||! !||||||..!! !..! !!.! eSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrAspTyrSerProAlaP 1946836 : TAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACGATTACTCCCCTGCGC : 1946780 168 : snTyrTyrTyrLeuAlaTyrLeuHisGlnSerTrpSerValThrIleAlaAlaThr : 185 ! !!:! !|||.!!!:!:!!||||||:!! :!!!.!||||||..!..!||| roIlePheIleLeuThrPheValHisGlnAlaIleAlaAlaThrIleCysCysThr 1946779 : CCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCGACGATATGTTGCACT : 1946726 186 : GlyAsnAlaAlaThrGluThrLeuValSerGlyPheMetIleGlnIleCysAlaGl : 204 ..!!:!!.!.!!..!!!::!!||| !!!!|||!!.:!!|||.!.|||! !..!|| SerSerValThrValAspSerLeuTyrThrGlyLeuLeuIleAsnIleTyrCysGl 1946725 : TCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTGATTAATATCTACTGCCA : 1946669 205 : nPheGluIleLeuGluHisArg : 211 |||||||||||||||||||||| nPheGluIleLeuGluHisArg 1946668 : GTTCGAGATACTAGAACATCGT : 1946646 vulgar: NvOr80 28 211 . KQ414661.1 1947298 1946645 - 201 M 92 276 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 13 39 G 1 0 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946646 1947298 201 - . gene_id 1 ; sequence NvOr80 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1947021 1947298 . - . KQ414661.1 exonerate:protein2genome:local exon 1947021 1947298 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1947019 1947020 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946914 1947020 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1946914 1946915 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946646 1946913 . - . KQ414661.1 exonerate:protein2genome:local exon 1946646 1946913 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946646 1947298 201 - . alignment_id 1 ; Query NvOr80 ; Align 1947299 29 276 ; Align 1946913 122 39 ; Align 1946874 136 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr80 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 257 -> 317 Target range: 1946233 -> 1946056 258 : AsnAspIlePheValPheValIleLeuSerGlnPheValThrSerIleThrValLe : 276 |||!!: !||| !.!.:!!:!::!!||||||||| !! !|||!!::!!|||:! AsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIl 1946233 : AACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGAT : 1946179 277 : uCysValSerThrTyrAsnLeuAlaLeuCysLysSerValAsnAsnAspPheValT : 295 !||| !!!:! !|||...:!!.!!! ! !||| :!!:!:... |||||| eCysPheAsnLeuTyrArgMetThrGlnIleLys---MetAspThrLysPheValG 1946178 : CTGCTTCAATCTTTACCGAATGACACAGATCAAA---ATGGAcacgaaattcgtcg : 1946125 296 : hrIlePheMetTyrLeuLeuCysMetLeuLeuGlnIlePheMetTyrThrTrpTyr : 313 |||.!.:!:|||! !!!!|||! :!! !||||||||| ||| !|||||| luIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyr 1946124 : aaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTAC : 1946071 314 : GlyAsnGluIle : 317 |||||||||:!: GlyAsnGluVal 1946070 : GGCAACGAAGTG : 1946057 vulgar: NvOr80 257 317 . KQ414661.1 1946233 1946056 - 130 M 30 90 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946057 1946233 130 - . gene_id 2 ; sequence NvOr80 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946057 1946233 . - . KQ414661.1 exonerate:protein2genome:local exon 1946057 1946233 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946057 1946233 130 - . alignment_id 2 ; Query NvOr80 ; Align 1946234 258 90 ; Align 1946144 289 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr87 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 318 -> 387 Target range: 1945967 -> 1945686 319 : SerLeuAsnPheGlnGlnThrIleTyrGluIleAspTrpThrSerLeuSerThrAr : 337 ||||||.!..!!! ! ! ! !|||!:!.!.! !|||||||||||||||!:!!.!!. SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSerLeuAsnAsnAs 1945967 : AGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTCTTTGAACAACAA : 1945913 338 : gSerSerArgAspLeuValLeuIleMetMetArgAlaSerLysProIleIleMetT : 356 ! !!!!|||! |||:!!:!!!!:|||! |||||| !!:!|||||| .!. nValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgProIleGluPheT 1945912 : CGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGCCAATAGAGTTCA : 1945856 357 : yrCysGlyHisPheIleValLeuSerLeuGluSerTyrIleGly >>>> Targe : 371 ! !! !||| !!:!! !:!!!:!|||||||||!:!!!:!.! hrSerIleHisValValSerValAsnLeuGluSerPheMetAla++ 1945855 : CCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCAgt.......... : 1945809 372 : t Intron 1 >>>> IleLeuLysValSerTyrSerValPheAsnIleLeuArg : 383 74 bp :!!:!!|||..!|||||||||!.!||||||!!::!!!:! ++ValIleLysThrSerTyrSerAlaPheAsnMetIleGln 1945808 : ...............agGTAATAAAAACTTCGTACTCCGCGTTCAACATGATCCAA : 1945701 384 : MetSerGluGlu : 387 ...|||:!!:!! GlnSerLysGln 1945700 : CAAAGCAAACAA : 1945687 vulgar: NvOr87 318 387 . KQ414661.1 1945967 1945686 - 118 M 52 156 5 0 2 I 0 70 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945687 1945967 118 - . gene_id 1 ; sequence NvOr87 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1945812 1945967 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1945967 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945687 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945687 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945687 1945967 118 - . alignment_id 1 ; Query NvOr87 ; Align 1945968 319 156 ; Align 1945738 371 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr87 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 318 -> 386 Target range: 1948618 -> 1948281 319 : SerLeuAsnPheGlnGlnThrIleTyrGluIleAspTrpThrSerLeuSerThrAr : 337 ||||||.!..!!....!.! !|||!:!.!.:!!||||||||| !!!!!..!! ! SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 1948618 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 1948564 338 : gSerSerArgAspLeuValLeuIleMetMetArgAlaSerLysProIleIleMetT : 356 !!!!!.!|||:!!:!!:!! !!!:|||||||||||||||..!|||||| !!!: aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 1948563 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 1948507 357 : yrCysGlyHisPheIleValLeuSerLeuGluSerTyrIleGly >>>> Targe : 371 ! !!! !!.! ! :!! !:!!!:!|||!!:|||!:!:!!!.! leSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 1948506 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.......... : 1948460 372 : t Intron 1 >>>> IleLeuLysValSerTyrSerValPheAsnIleLeuArg : 383 133 bp :!:||||||..!|||||||||!.!!:!|||:!!|||!:! ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGln 1948459 : ...............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAA : 1948293 384 : MetSerGlu : 386 .!!||| ArgGlyGlu 1948292 : CGCGGCGAA : 1948282 vulgar: NvOr87 318 386 . KQ414661.1 1948618 1948281 - 113 M 52 156 5 0 2 I 0 129 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948282 1948618 113 - . gene_id 2 ; sequence NvOr87 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1948463 1948618 . - . KQ414661.1 exonerate:protein2genome:local exon 1948463 1948618 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1948461 1948462 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1948330 1948462 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1948330 1948331 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1948282 1948329 . - . KQ414661.1 exonerate:protein2genome:local exon 1948282 1948329 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948282 1948618 113 - . alignment_id 2 ; Query NvOr87 ; Align 1948619 319 156 ; Align 1948330 371 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr87 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 122 -> 213 Target range: 1946906 -> 1946633 123 : ThrLeuAlaCysAlaPheLeuValAsnValThrMetMetAsnLeuValThrLeuPr : 141 |||:!!!.!! ! ! |||::: :::::: !.!. !:!! !..! ! ! ThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrValArgSe 1946906 : ACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTATATACGTGAGATC : 1946852 142 : oLeuValThrSerGlyAspAsnArgThrLeuProMetArgValTrpLeuProTyrL : 160 !|||:!!! !..! !..!||||||! !||| !.!.|||!.!|||:!!|||||| rLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrA 1946851 : GCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACG : 1946795 161 : ysValAspSerAspMetSerTyrTrpLeuSerTyrAlaHisGlnThrValGlyIle : 178 ! !..! !!! ! !!:! |||!!!!:!!.!||||||.!!:!!!.! spTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAlaIleAlaAla 1946794 : ATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCG : 1946741 179 : ValPheValGlyThrGlyAlaValGlySerThrLeuMetIleAsnGlyPheMetTy : 197 ..!.!. ! !!|||..!::!||| ! ! !! !:!: !!.!|||!!.:!! ThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLeuIl 1946740 : ACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTGAT : 1946684 198 : rGlnValCysCysGlnPheGluIleLeuSerSerArgPheGlnAsnLeu : 213 !.!.:!!! !||||||||||||||||||..! !|||.!.::!|||:!! eAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnVal 1946683 : TAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTT : 1946634 vulgar: NvOr87 122 213 . KQ414661.1 1946906 1946633 - 112 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946634 1946906 112 - . gene_id 3 ; sequence NvOr87 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946634 1946906 . - . KQ414661.1 exonerate:protein2genome:local exon 1946634 1946906 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1946634 1946906 112 - . alignment_id 3 ; Query NvOr87 ; Align 1946907 123 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr79 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 340 -> 390 Target range: 1345564 -> 1345714 341 : SerGlnSerLeuAspGluAlaIleGlnGlnSerHisTrpValAsnLeuAspArgLe : 359 |||.....!:!!.!.:!!||| ! ! |||:!!||| !:!!||| ! SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 360 : uSerLysArgGlnLeuPhePheMetIleGlnArgSerGlnLysProLeuAlaIleT : 378 !! !! !|||..!|||.!.||| ||| |||||||||||||||! ! !:!!| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 379 : hrAlaGlyLysIleTyrValLeuSerLeuGluAsnPhe : 390 |||||||||||.!!||||||!!!|||||||||!..||| hrAlaGlyLysPheTyrValPheSerLeuGluThrPhe 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTC : 1345714 vulgar: NvOr79 340 390 . KQ414782.1 1345564 1345714 + 110 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345714 110 + . gene_id 1 ; sequence NvOr79 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345714 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345714 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345714 110 + . alignment_id 1 ; Query NvOr79 ; Align 1345565 341 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr93 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 243 -> 373 Target range: 1682127 -> 1682814 244 : ValLysHisHisValHisIlePheLysPheAlaGluAsnIleAsnValIlePheTh : 262 |||:!!:!!||| ! :!!.!!..!:::...|||...:::... :!!||| ValGlnTyrHisHisLeuLeuLeuSerTyrValGluLysLeuGluTyrValPheCy 1682128 : GTACAGTATCATCATTTGCTTCTTTCGtacgtggaaaaattggaatacgTATTTTG : 1682182 263 : rProValIleLeuValGlnPheCysMetSerSerIleValLeuSerLeuSerValT : 281 ! ! !:!::!!:!!|||!!. :!!|||||||||||||||!!!:!!|||! !! sValProLeuMetIleGlnLeuLeuValSerSerIleValLeuCysValSerGlyP 1682183 : TGTCCCGTTGATGATTCAATTGCTGGTGTCTAGCATAGTTCTGTGCGTCTCGGGGT : 1682239 282 : yrGlnLeuAlaVal >>>> Target Intron 1 >>>> ArgSerAlaAsnG : 290 :!||||||:!!:!! 285 bp !!:!!.! heGlnLeuSerLeu++ ++ValAsnGlyValL 1682240 : TTCAACTATCATTGgt.........................agGTGAACGGTGTAT : 1682551 291 : lyIleGlnPheIleThrMetValMetTyrLeuThrCysMetLeuValGlnPhePhe : 308 !!!::!! :!: !.!.:!!! |||!!! ! !! :!!:!:|||...||| euMetLysArgLeuLeuPheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePhe 1682552 : TGATGAAACGATTGTTGTTCCTAAATTACTTTCTCGGTGGAGTGATacagatattt : 1682605 309 : MetTyrCysTrpPheGlyAsnGluValThrLeuLysSerValGluPheGlyGlnAl : 327 ::: ! !!|||!!::!!! ! !:!!|||! !! .!.||| !|| LeuIleThrLeuAsnCysAsnAspIleMetGluGlnSerGlyAlaIleGlyThrAl 1682606 : ttaataacccTAAATTGCAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAGC : 1682662 328 : aIleTyrAsnIleGluTrpThr<-><-><-><->SerLeuGlnValGlnThrSerL : 342 |||||||!:! !.!.||| ! ::: ||| !!!!| aIleTyrSerCysAsnTrpGluArgAsnValTyrAsnHisPheTyrGlnPheArgL 1682663 : GATCTACAGTTGTAATTGGGAGAGGAAtgtttataatcatttttaccAGTTCAGAA : 1682719 343 : ysAspLeuMetIleMetMetIleArgAlaLysArgProIleIleMetSerSerGly : 360 |||||:!!||||||:!:|||:!!||||||||||||||| ! !!!:|||:!!!.! ysAspMetMetIleValMetValArgAlaLysArgProCysTyrIleSerAlaAla 1682720 : AGGATATGATGATTGTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGCAGCG : 1682773 361 : AlaLeuValThrLeuSerIleLysSerPheThrSerIle : 373 !!!! !! !!:!!|||:!!:!!|||||||||!..::: LysPhePheProIleSerLeuGluSerPheThrLysVal 1682774 : AAATTCTTTCCAATCTCCCTTGAATCGTTCACGAaggta : 1682814 vulgar: NvOr93 243 373 . KQ414915.1 1682127 1682814 + 131 M 42 126 5 0 2 I 0 281 3 0 2 M 49 147 G 0 12 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682128 1682814 131 + . gene_id 1 ; sequence NvOr93 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1682128 1682253 . + . KQ414915.1 exonerate:protein2genome:local exon 1682128 1682253 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1682254 1682255 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1682254 1682538 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1682537 1682538 . + . intron_id 0 ; splice_site "aG" KQ414915.1 exonerate:protein2genome:local cds 1682539 1682814 . + . KQ414915.1 exonerate:protein2genome:local exon 1682539 1682814 . + . insertions 12 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1682128 1682814 131 + . alignment_id 1 ; Query NvOr93 ; Align 1682128 244 126 ; Align 1682539 286 147 ; Align 1682698 335 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr85 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 279 -> 386 Target range: 807260 -> 807581 280 : IleIleTyrValLeuThrIleGlyLysValProIleLeuGlnLysLeuMetSerValG : 299 .!!:!!!:!:!!:!!.!!:!:.!!! ! ! !! !:!! ! !|||! !||| !!! PheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheV 807261 : TTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCG : 807318 300 : lyTyrLeuIleCysMetLeuGlyGluLeuPheAlaTyrCysTrpPheGlyAsnGluIl : 318 ! :!!:!: !:!!||| !:!!|||!:! !|||..!!:: |||||| !:! alLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLe 807319 : TTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACT : 807375 319 : eThrLeuLysSerLeuGluPheSerAspAspIleTyrLysIleAspTrpMetAlaLeu : 337 ! !! !::!!!! !|||.!!:!!.!.! ! !||| ! ! !||| !! ! uGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCys 807376 : CGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGC : 807432 338 : SerAspSerSerAsnLysLysLeuIlePheIleMetMetArgAlaThrGlnProIleI : 357 !! !:!! !!:! ! |||:!!!!.|||!!: |||!.!!.!..!||| ! HisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrA 807433 : CACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATC : 807492 358 : leMetSerTyrGlyHisLeuValIleLeuAsnIleGluSerPheLysSerIleLeuLy : 376 !!!:!!! !||| ! !!!||| :!!|||:!! !!!||||||..!|||||||| rgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLy 807493 : GTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAA : 807549 377 : sIleThrTyrThrAlaPheAsnIleLeuLys : 386 | !:!! !:!! !.!.::!:!!:!!||| sAlaSerGlySerTyrLeuSerValMetLys 807550 : AGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: NvOr85 279 386 . KQ414940.1 807260 807581 + 105 M 107 321 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807261 807581 105 + . gene_id 1 ; sequence NvOr85 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807261 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807261 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807261 807581 105 + . alignment_id 1 ; Query NvOr85 ; Align 807261 280 321 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr83PSE Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 280 -> 372 Target range: 807305 -> 807581 281 : IleLeuAlaIleValTyrLeuIleCysThrMetGlyGluLeuPheAlaTyrCysTrpP : 300 :!: !::!.!!||| :!!:!: ! !:!! !:!!|||!:! !|||..!!:: LeuArgSerPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrA 807306 : TTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACG : 807363 301 : heGlyAsnGluIleThrValLysSerLeuGluPheSerThrAspIleTyrAsnIleAs : 319 |||||| !:!! ! !::!!!! !|||.!!:!! !! ! !|||:!! ! laGlyAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLe 807364 : CGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCT : 807420 320 : pTrpThrAlaLeuSerGlnLysThrLysLysMetLeuIleIleIleMetMetArgThr : 338 !||| ! !! ! ! ! ! .!! !:! |||:!!:!:|||!!: ||| ! uTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGly 807421 : TTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGA : 807477 339 : AsnLysProIleValIleSerTyrGlyTyrLeuIleValLeuAsnIleAspSerPheL : 358 |||..!||| ! !|||!!! !||| ! !!!:!! !:!!|||:!! !!!!|||| AsnSerProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheL 807478 : AATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCA : 807537 359 : ysSerIleLeuLysValThrTyrThrAlaPheAsnValIleLys : 372 ||..!|||||||||!.!:!! !:!! !.!.::!|||!!:||| ysGluIleLeuLysAlaSerGlySerTyrLeuSerValMetLys 807538 : AGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: NvOr83PSE 280 372 . KQ414940.1 807305 807581 + 106 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807306 807581 106 + . gene_id 1 ; sequence NvOr83PSE ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807306 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807306 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807306 807581 106 + . alignment_id 1 ; Query NvOr83PSE ; Align 807306 281 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr87 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 277 -> 384 Target range: 807263 -> 807584 278 : IleTyrGlnLeuSerThrArgProGluLysAspLeuGluPheIleMetValPhePheT : 297 :!!!:!! !:!!:!! !!!! !!:!! ! :!!:!!! ! :!:! ! !||| !! ValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValL 807264 : GTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTC : 807321 298 : yrLeuValCysValLeuValGluPheLeuValTyrSerTrpPheGlyAsnGluLeuMe : 316 :!!||| !:!!|||:!!:!!.!.! !:!!|||:!!!:: |||||| !||| euMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGl 807322 : TGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGA : 807378 317 : tLeuGluSerLeuAsnPheGlnGlnThrIleTyrGluIleAspTrpThrSerLeuSer : 335 !! !..!!!! !.!..!! !|||.!! !|||!!: ! !||| ! !!! ! ! uSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHis 807379 : GTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCAC : 807435 336 : ThrArgSerSerArgAspLeuValLeuIleMetMetArgAlaSerLysProIleIleM : 355 !!.!:!!:!!|||||||||:!!||||||!!: |||!.!!:!..!||| ! !! GlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgI 807436 : GGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTA : 807495 356 : etTyrCysGlyHisPheIleValLeuSerLeuGluSerTyrIleGlyIleLeuLysVa : 374 !: ..!||| ! |||:!! !:!!!:!||| !!!!:!! ! !|||||||||!. leThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAl 807496 : TAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGC : 807552 375 : lSerTyrSerValPheAsnIleLeuArgMet : 384 !||| !||| !.!.::!:!!:!!!:!:!: aSerGlySerTyrLeuSerValMetLysVal 807553 : TTCTGGCTCGTATCTGTCTGTAATGAAGGTA : 807584 vulgar: NvOr87 277 384 . KQ414940.1 807263 807584 + 121 M 107 321 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807264 807584 121 + . gene_id 1 ; sequence NvOr87 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807264 807584 . + . KQ414940.1 exonerate:protein2genome:local exon 807264 807584 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807264 807584 121 + . alignment_id 1 ; Query NvOr87 ; Align 807264 278 321 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr93 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 279 -> 385 Target range: 807263 -> 807581 280 : ValTyrGlnLeuAlaValArgSerAlaAsnGlyIleGlnPheIleThrMetValMetT : 299 |||!:!! !:!!|||:!!!!!!!! !:!!..!:!! ! :!:! !! !!:!: ValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValL 807264 : GTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTC : 807321 300 : yrLeuThrCysMetLeuValGlnPhePheMetTyrCysTrpPheGlyAsnGluValTh : 318 :!!..! !:!!|||:!!|||.!.!:!:!:|||..!!:: |||||| !:!! euMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGl 807322 : TGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGA : 807378 319 : rLeuLysSerValGluPheGlyGlnAlaIleTyrAsnIleGluTrpThrSerLeuGln : 337 !! !::!!!!! !|||.!!!.!|||||| !|||:!! ! ||| ! !!! !!!. uSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHis 807379 : GTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCAC : 807435 338 : ValGlnThrSerLysAspLeuMetIleMetMetIleArgAlaLysArgProIleIleM : 357 ! !!!..!!:!!!:!||||||:!::!:!!:!!: !|||!.!!!. !||| ! !! GlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgI 807436 : GGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTA : 807495 358 : etSerSerGlyAlaLeuValThrLeuSerIleLysSerPheThrSerIleLeuLysAl : 376 !:!!!:!!||| !!!!||| !!:!!!:!:!! !!!|||! !..!||||||||||| leThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAl 807496 : TAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGC : 807552 377 : aSerTyrSerThrPheAsnValLeuGln : 385 |||| !||| !.!.::!|||:!!:!! aSerGlySerTyrLeuSerValMetLys 807553 : TTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: NvOr93 279 385 . KQ414940.1 807263 807581 + 137 M 106 318 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807264 807581 137 + . gene_id 1 ; sequence NvOr93 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807264 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807264 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807264 807581 137 + . alignment_id 1 ; Query NvOr93 ; Align 807264 280 318 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr79 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 297 -> 407 Target range: 807254 -> 807587 298 : AsnGlyPheLysLeuIleValSerLeuCysAsnArgGlu<->ValAspIleLeuMetT : 316 !..|||||| !!!:!:|||:!!||| !!!..!:!!!: |||! !|||! ! ThrGlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgS 807255 : ACAGGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGA : 807312 317 : yrIleValCysLeuProValThrLeuPheGlnIleLeuPheTyrCysGlnProGlyAs : 335 !.!!||| :!! !..! !|||.!!|||:!:! !.!!|||..! ! !!||||| erPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807313 : GCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 336 : nGluLeuIleValGlnSerGlnSerLeuAspGluAlaIleGlnGlnSerHisTrpVal : 354 | !||| !!:!!!!:!!..!:!!! :!!||| ! ! .!.|||! !||| ! nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 355 : AsnLeuAspArgLeuSerLysArgGlnLeuPhePheMetIleGlnArgSerGlnLysP : 374 ..!! ! !! !!! !:!! |||.!.|||.!!!!.!!:|||!!.|||.!!.!...!| ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 375 : roLeuAlaIleThrAlaGlyLysIleTyrValLeuSerLeuGluAsnPheMetArgIl : 393 ||! ! !|||||||||||||||.!! ! !:!!!:!||| !.!|||! !..!|| roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 394 : eValLysThrAlaMetSerAlaLeuSerValLeuGlnAlaMet : 407 |:!!|||.!!:!! ||| !|||||||||:!!:!!!.!||| eLeuLysAlaSerGlySerTyrLeuSerValMetLysValMet 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: NvOr79 297 407 . KQ414940.1 807254 807587 + 131 M 13 39 G 0 3 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807255 807587 131 + . gene_id 1 ; sequence NvOr79 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807255 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807255 807587 . + . insertions 3 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807255 807587 131 + . alignment_id 1 ; Query NvOr79 ; Align 807255 298 39 ; Align 807297 311 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr82 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 232 Query range: 253 -> 390 Target range: 888 -> 245 254 : IleGluPheSerGluLysLeuAsnSerThrPheAsnValIleLeuPheValGlnPheAlaIleS : 275 .!!..!|||:!!|||! :!!|||:!!! !|||!:!:!!! :!! !..!|||||| !:!:! PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValT 888 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGA : 825 276 : erSerLeuValLeuCysSerSerValTyrLeuLeuSerLysMetLysLeuValSerValHisPh : 296 !!!!!:!!..!:!!|||! !!:!:!!!:!! !|||!!!:!!! |||:!! !||| !!. ! hrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysValTyrSer---GlnVa 824 : CCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGGTGTATTCG---CAAGT : 765 297 : eMetSerLeuSerLeuTyrLeuSerCysMetLeuTyrGlnIlePheLeuPheCysTrpTyrGly : 317 !:!::!!|||! !! !!:!:!! ! !!:!!!!! |||||||||! !! !|||||||||||| lLeuAlaLeuIleProPheMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGly 764 : TTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGA : 702 318 : AsnGluValIleLeuGln >>>> Target Intron 1 >>>> SerLeuAspLeuGlyAs : 329 ||||||..!! !:!!:!! 74 bp ||||||!!::!! !!:! AsnGluThrLysValLys++ ++SerLeuGluIleCysAs 701 : AACGAGACCAAAGTGAAGgt.........................agAGCCTTGAAATTTGCGA : 592 330 : nAlaValTyrHisMetAspTrpThrIleLeuSerThrGluAspLysLysLysLeuLeuIleVal : 350 !.!!|||!:!.!.! :!!|||||| !|||||| !... !||||||! !||||||! :!! pThrValPheGluSerAsnTrpThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIle 591 : CACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATT : 529 351 : IleLeuLeuValArgLysProIleGlnPheThrSerSerPheLeuValSerLeuSerIleGluS : 372 !!:|||! ! ! !|||||||||:!!||||||.!!:!!|||:!! !! !!:!!!:!:!:|||| MetLeuArgSerLeuLysProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluS 528 : ATGTTACGCTCGTTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTTTCCCGTAAATTTGGAGT : 463 373 : erTyrCysLys >>>> Target Intron 2 >>>> IleLeuLysThrSerTyrSerVal : 383 ||!:! !.. 161 bp :!::!!|||||||||||||||||| erPheLysSer++ ++LeuValLysThrSerTyrSerVal 462 : CTTTTAAAAGTgt.........................agTTGGTGAAAACTTCCTATTCGGTA : 269 384 : PheAsnLeuLeuGlnArgThr : 390 ||||||:!!:!!|||!:!||| PheAsnValIleGlnGlnThr 268 : TTCAACGTAATCCAGCAAACG : 246 vulgar: NvOr82 253 390 . LHQN01050085.1 888 245 - 232 M 40 120 G 1 0 M 29 87 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 246 888 232 - . gene_id 1 ; sequence NvOr82 ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 682 888 . - . LHQN01050085.1 exonerate:protein2genome:local exon 682 888 . - . insertions 0 ; deletions 1 LHQN01050085.1 exonerate:protein2genome:local splice5 680 681 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 608 681 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 608 609 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 452 607 . - . LHQN01050085.1 exonerate:protein2genome:local exon 452 607 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 450 451 . - . intron_id 2 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 291 451 . - . intron_id 2 LHQN01050085.1 exonerate:protein2genome:local splice3 291 292 . - . intron_id 1 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 246 290 . - . LHQN01050085.1 exonerate:protein2genome:local exon 246 290 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 246 888 232 - . alignment_id 1 ; Query NvOr82 ; Align 889 254 120 ; Align 769 295 87 ; Align 608 324 156 ; Align 291 376 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr93 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 250 -> 320 Target range: 888 -> 681 251 : PheLysPheAlaGluAsnIleAsnValIlePheThrProValIleLeuValGlnPheCysMetS : 272 |||!:!|||||||||! !||||||!.!! |||!:! !..!!!: !..!|||||| :!!! PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValT 888 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGA : 825 273 : erSerIleValLeuSerLeuSerValTyrGlnLeuAlaValArgSerAlaAsnGlyIleGlnPh : 293 !!!!!!!:..!:!!!!!!!!!:!:!!!:!!:!|||.!! !! !!.!!.! !!..! ||| ! hrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysValTyrSer---GlnVa 824 : CCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGGTGTATTCG---CAAGT : 765 294 : eIleThrMetValMetTyrLeuThrCysMetLeuValGlnPhePheMetTyrCysTrpPheGly : 314 !:!!.!!:!!:!! !!:!:!!..! !!:!!!!!!.!|||.!.||| ! !||||||!:!||| lLeuAlaLeuIleProPheMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGly 764 : TTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGA : 702 315 : AsnGluValThrLeuLys : 320 ||||||..!! !:!!||| AsnGluThrLysValLys 701 : AACGAGACCAAAGTGAAG : 682 vulgar: NvOr93 250 320 . LHQN01050085.1 888 681 - 100 M 40 120 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 682 888 100 - . gene_id 1 ; sequence NvOr93 ; gene_orientation . LHQN01050085.1 exonerate:protein2genome:local cds 682 888 . - . LHQN01050085.1 exonerate:protein2genome:local exon 682 888 . - . insertions 0 ; deletions 1 LHQN01050085.1 exonerate:protein2genome:local similarity 682 888 100 - . alignment_id 1 ; Query NvOr93 ; Align 889 251 120 ; Align 769 292 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr85 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 190 Query range: 251 -> 382 Target range: 888 -> 424 252 : IleLysTyrAlaLysValValThrGluThrPheAspValValIleValGluGlnPhePheAlaG : 273 .!!!:!!:!|||:!!:!!:!!!.!! !! !|||..!:!!..!!!:!.! !||||||.!.!.! PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValT 888 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGA : 825 274 : lyAlaLeuIlePheSerValIleIleTyrValLeuThrIleGlyLysValProIleLeuGlnLy : 294 !.!!:!!! !.!.!!! !!! !:!!!:! !|||||| !|||||| !! !||| hrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysVal---TyrSerGlnVa 824 : CCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGGTG---TATTCGCAAGT : 765 295 : sLeuMetSerValGlyTyrLeuIleCysMetLeuGlyGluLeuPheAlaTyrCysTrpPheGly : 315 ||| ! !:!! !!:!:!!:!! !!:!!!!!!.!:!!:!!||| !! !||||||!:!||| lLeuAlaLeuIleProPheMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGly 764 : TTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGA : 702 316 : AsnGluIleThrLeuLys >>>> Target Intron 1 >>>> SerLeuGluPheSerAs : 327 ||||||! !! !:!!||| 74 bp |||||||||.!!!!!|| AsnGluThrLysValLys++ ++SerLeuGluIleCysAs 701 : AACGAGACCAAAGTGAAGgt.........................agAGCCTTGAAATTTGCGA : 592 328 : pAspIleTyrLysIleAspTrpMetAlaLeuSerAspSerSerAsnLysLysLeuIlePheIle : 348 | :!!!:!:!!! !:!!|||! !|||||||||.!.|||!!!!!.|||! !|||:!: ||| pThrValPheGluSerAsnTrpThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIle 591 : CACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATT : 529 349 : MetMetArgAlaThrGlnProIleIleMetSerTyrGlyHisLeuValIleLeuAsnIleGluS : 370 |||:!:|||:!! !:!!|||||| !.!.!!! !!.! !:!! !! !:!!|||:!:|||| MetLeuArgSerLeuLysProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluS 528 : ATGTTACGCTCGTTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTTTCCCGTAAATTTGGAGT : 463 371 : erPheLysSerIleLeuLysIleThrTyrThrAlaPhe : 382 |||||||||||:!!! ! ||| ||| erPheLysSerValCysIleLysIleTyrIlePhePhe 462 : CTTTTAAAAGTGTTTGTatcaaaatatatatatttttc : 425 vulgar: NvOr85 251 382 . LHQN01050085.1 888 424 - 190 M 38 114 G 1 0 M 31 93 5 0 2 I 0 70 3 0 2 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 425 888 190 - . gene_id 1 ; sequence NvOr85 ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 682 888 . - . LHQN01050085.1 exonerate:protein2genome:local exon 682 888 . - . insertions 0 ; deletions 1 LHQN01050085.1 exonerate:protein2genome:local splice5 680 681 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 608 681 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 608 609 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 425 607 . - . LHQN01050085.1 exonerate:protein2genome:local exon 425 607 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 425 888 190 - . alignment_id 1 ; Query NvOr85 ; Align 889 252 114 ; Align 775 291 93 ; Align 608 322 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr83PSE Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 191 Query range: 264 -> 368 Target range: 813 -> 424 265 : IleCysUnkTyrIleLeuThrIleGlyLysValAlaValLeuGluLysIleLeuAlaIleVal< : 286 !!:||| !!:!!!!! !:!: !:!!..! !|||! !..!:!!:!!||||||:!::!! MetCysPheAsnLeuPheArgLeuThrGlnThrLysValTyrSerGlnValLeuAlaLeuIleP 813 : ATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGGTGTATTCGCAAGTTTTAGCATTGATAC : 750 287 : ->TyrLeuIleCysThrMetGlyGluLeuPheAlaTyrCysTrpPheGlyAsnGluIleThrVa : 306 !:!:!!:!! !!..!.!.!.!:!!:!!||| !! !||||||!:!|||||||||! !! !|| roPheMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLysVa 749 : CGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGT : 687 307 : lLys >>>> Target Intron 1 >>>> SerLeuGluPheSerThrAspIleTyrAsnI : 318 |||| 74 bp |||||||||.!!!!! ! :!!!:!.!.! lLys++ ++SerLeuGluIleCysAspThrValPheGluS 686 : GAAGgt.........................agAGCCTTGAAATTTGCGACACAGTATTCGAAA : 577 319 : leAspTrpThrAlaLeuSerGlnLysThrLysLysMetLeuIleIleIleMetMetArgThrAs : 339 !:!!||||||||||||||||||!..|||||||||! |||:!:! ||||||:!:|||:!! erAsnTrpThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgSerLe 576 : GCAACTGGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTT : 514 340 : nLysProIleValIleSerTyrGlyTyrLeuIleValLeuAsnIleAspSerPheLysSerIle : 360 |||||||||! !.!!!!! !!.!!:!:!!.!! !:!!|||:!:!!:||||||||||||:!! uLysProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSerPheLysSerVal 513 : GAAGCCAATAGAATTCACCGGCGCTTTCGTTTTTCCCGTAAATTTGGAGTCTTTTAAAAGTGTT : 451 361 : LeuLysValThrTyrThrAlaPhe : 368 ! ! ||| ||| CysIleLysIleTyrIlePhePhe 450 : TGTatcaaaatatatatatttttc : 425 vulgar: NvOr83PSE 264 368 . LHQN01050085.1 813 424 - 191 M 21 63 G 0 3 M 22 66 5 0 2 I 0 70 3 0 2 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 425 813 191 - . gene_id 1 ; sequence NvOr83PSE ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 682 813 . - . LHQN01050085.1 exonerate:protein2genome:local exon 682 813 . - . insertions 3 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 680 681 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 608 681 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 608 609 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 425 607 . - . LHQN01050085.1 exonerate:protein2genome:local exon 425 607 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 425 813 191 - . alignment_id 1 ; Query NvOr83PSE ; Align 814 265 63 ; Align 748 286 66 ; Align 608 308 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr84INT Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 307 -> 368 Target range: 589 -> 245 308 : ThrIleTyrArgIleAspTrpThrLeuLeuSerAlaGluAlaSerArgHisLeuLeuPheIleM : 329 |||:!!!:!..!! !:!!|||||| !|||||| !....!!!.!!:! |||||| |||| ThrValPheGluSerAsnTrpThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleM 589 : ACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTA : 526 330 : etLeuArgThrSerLysProIleValMetSerCysGlyHisPheValValLeuAsnValGluSe : 350 ||||||||:!!! !|||||||||! !.!.!!! !!!.! ! !! !! !:!!|||:!!||||| etLeuArgSerLeuLysProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSe 525 : TGTTACGCTCGTTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTTTCCCGTAAATTTGGAGTC : 463 351 : rPheLysSer >>>> Target Intron 1 >>>> IleLeuLysValSerTyrSerAlaP : 362 |||||||||| 161 bp :!::!!|||..!|||||||||!.!| rPheLysSer++ ++LeuValLysThrSerTyrSerValP 462 : TTTTAAAAGTgt.........................agTTGGTGAAAACTTCCTATTCGGTAT : 266 363 : heAsnPheLeuLysGluSer : 368 ||||| ! :!!:!!:!!!!! heAsnValIleGlnGlnThr 265 : TCAACGTAATCCAGCAAACG : 246 vulgar: NvOr84INT 307 368 . LHQN01050085.1 589 245 - 106 M 46 138 5 0 2 I 0 157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 246 589 106 - . gene_id 1 ; sequence NvOr84INT ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 452 589 . - . LHQN01050085.1 exonerate:protein2genome:local exon 452 589 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 450 451 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 291 451 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 291 292 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 246 290 . - . LHQN01050085.1 exonerate:protein2genome:local exon 246 290 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 246 589 106 - . alignment_id 1 ; Query NvOr84INT ; Align 590 308 138 ; Align 291 354 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr100 Target: KQ414583.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold34, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 166 -> 237 Target range: 619756 -> 619969 167 : LeuProValAspAlaTrpTyrProTyrSerIleGlnLysSerLeuAsnTyrTrpLeuT : 186 ||| !:!! ! |||||||||||||||!:!:!! !! |||! ! !||| ...| LeuLeuIleLysAlaTrpTyrProTyrAsnValThrIleSerProAlaTyrGluPheT 619757 : TTATTGATAAAAGCATGGTATCCTTATAATGTAACAATTTCGCCAGCTTAtgaattta : 619814 187 : hrTyrPheHisGlnIleIleLeuGlySerSerLeuIleCysValHisIleGlyThrAs : 205 || ...||||||:!!:!: !! !!!! ::::!!!.!! !|| hrIleLeuHisGlnValValGlyValThrValAsnCysIleAsnAsnValAlaIleAs 619815 : ctattttacatCAAGTCGTGGGTGTCACTGtaaattgtattaataatGTAGCAATAGA : 619871 206 : pThrLeuPheValGlyLeuLeuLeuLysLeuValCysGlnIleAsnIleLeuArgTyr : 224 ||||!!!.!...!|||!!!:!!:!!! ! !||||||:!:!..:!!|||!!!||| pThrPheIleThrGlyPheIleIleThrAlaCysCysGlnLeuThrLeuLeuSerTyr 619872 : TACTTTTATAACAGGTTTTATAATAACTGCTTGTTGCCAATTGACACTCTTAAGTTAT : 619928 225 : ArgLeuGlnSerLeuThrSerLeuCysSerLysAsnPhe : 237 !.!:!!...|||:!! !! ! !.....!|||.!.||| AsnIleSerSerIleHisTyrGluAlaGluLysGluPhe 619929 : AACATCTCTTCGATACACTATGAAGCGGAGAAAGAATTT : 619969 vulgar: NvOr100 166 237 . KQ414583.1 619756 619969 + 110 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414583.1 exonerate:protein2genome:local gene 619757 619969 110 + . gene_id 1 ; sequence NvOr100 ; gene_orientation . KQ414583.1 exonerate:protein2genome:local cds 619757 619969 . + . KQ414583.1 exonerate:protein2genome:local exon 619757 619969 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local similarity 619757 619969 110 + . alignment_id 1 ; Query NvOr100 ; Align 619757 167 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr94 Target: KQ414583.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold34, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 80 -> 208 Target range: 619537 -> 619927 81 : ValValIleLeuLeuArgArgLysHisValIleAspLeuAlaGluMetLeuLeuLysL : 100 :!!||||||:!!||||||||||||!.!:!!! !|||||| !.!.!!: ! ! !| IleValIleValLeuArgArgLysArgIleLysAspLeuIleAsnIleThrGluGlyL 619538 : ATTGTTATCGTTCTACGACGTAAACGTATCAAAGATCTTATAAATATAACCGAGGGAA : 619595 101 : ysGluCysValProIleAsnAlaThrGluLysArgValCysSerTyrPhe<-><->As : 117 || !! !:!!! !! !|||! !! ! ! :!!|||:!! !!!|||!:! .! ysLeuPheIleArgAsnAsnAspLysTyrGluArgIleValThrTyrTyrThrTrpGl 619596 : AACTGTTTATCCGCAATAACGATAAATACGAACGTATCGTAACGTATTACACTTGGCA : 619652 118 : nLysIleSerArgTyrThrValLeuSerCysIleValLeuAlaGluGlyThrIleSer : 136 . !|||! !!.!:!!! !..!! !..! !!.!!! !:!! !! ! !! !.!!!!! nGlyIlePheHisHisIleThrTyrGlnSerPheGlyIleIleAlaValIlePheTrp 619653 : AGGAATTTTCCATCATATCACTTATCAAAGCTTCGGTATCATAGCTGTAATCTTCTGG : 619709 137 : AlaLeuAlaLeuLeuProValValPheGluGlnGlyGluLeuValLeuProLeuArgA : 156 :!!! !.!! !:!! ! !:!!.!.:!!!:! ! ! ! !:!!||| !:!!!:!| SerCysThrAlaValValAsnLeuMetLysArgThrTyrGlnLeuLeuLeuIleLysA 619710 : TCATGCACAGCAGTTGTAAATCTGATGAAACGGACGTATCAACTTTTATTGATAAAAG : 619769 157 : laTrpTyrProTyrAsnAlaGlySerGlyLeuGlyTyrTrpLeuSerTyrLeuHisGl : 175 |||||||||||||||||!.! !! !..!! !!.!||| ...::: |||||||| laTrpTyrProTyrAsnValThrIleSerProAlaTyrGluPheThrIleLeuHisGl 619770 : CATGGTATCCTTATAATGTAACAATTTCGCCAGCTTAtgaatttactattttacatCA : 619826 176 : nAlaMetAlaLeuThrLeuIleAlaAlaTyrAspValAlaAsnAspThrIleIleThr : 194 |!.!:!!!.!:!!|||::: ... :::||||||! ||||||.!!|||||| nValValGlyValThrValAsnCysIleAsnAsnValAlaIleAspThrPheIleThr 619827 : AGTCGTGGGTGTCACTGtaaattgtattaataatGTAGCAATAGATACTTTTATAACA : 619883 195 : GlyPheMetValGlnAlaCysAlaGlnLeuGluLeuMetThr : 208 ||||||!!::!! ||||||..!|||||| !|||:!:!:! GlyPheIleIleThrAlaCysCysGlnLeuThrLeuLeuSer 619884 : GGTTTTATAATAACTGCTTGTTGCCAATTGACACTCTTAAGT : 619927 vulgar: NvOr94 80 208 . KQ414583.1 619537 619927 + 141 M 36 108 G 0 6 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414583.1 exonerate:protein2genome:local gene 619538 619927 141 + . gene_id 1 ; sequence NvOr94 ; gene_orientation . KQ414583.1 exonerate:protein2genome:local cds 619538 619927 . + . KQ414583.1 exonerate:protein2genome:local exon 619538 619927 . + . insertions 6 ; deletions 0 KQ414583.1 exonerate:protein2genome:local similarity 619538 619927 141 + . alignment_id 1 ; Query NvOr94 ; Align 619538 81 108 ; Align 619652 117 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr103 Target: KQ414583.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold34, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 158 -> 219 Target range: 619753 -> 619936 159 : ValLeuProIleGluAlaTrpTyrProTyrAsnThrSerAsnLeuLysAsnTyrLeuP : 178 :!!||| !|||:!!||||||||||||||||||..!!!!! !! ! ! !||| | LeuLeuLeuIleLysAlaTrpTyrProTyrAsnValThrIleSerProAlaTyrGluP 619754 : CTTTTATTGATAAAAGCATGGTATCCTTATAATGTAACAATTTCGCCAGCTTAtgaat : 619811 179 : heAlaTyrThrGlnGlnLeuMetGlyGlyIleProLeuIleCysLeuHisIleSerVa : 197 ||... ...|||:!!:!!|||! !! ! ::::!!:!!:! heThrIleLeuHisGlnValValGlyValThrValAsnCysIleAsnAsnValAlaIl 619812 : ttactattttacatCAAGTCGTGGGTGTCACTGtaaattgtattaataatGTAGCAAT : 619868 198 : lAspSerLeuPheValGlyLeuIleLeuGlnMetCysIleGlnLeuLysLeuLeuGln : 216 !|||!!!!!!.!...!|||!!!|||:!! ||| !||||||! !||||||... eAspThrPheIleThrGlyPheIleIleThrAlaCysCysGlnLeuThrLeuLeuSer 619869 : AGATACTTTTATAACAGGTTTTATAATAACTGCTTGTTGCCAATTGACACTCTTAAGT : 619925 217 : TyrArgLeu : 219 |||!.!:!! TyrAsnIle 619926 : TATAACATC : 619936 vulgar: NvOr103 158 219 . KQ414583.1 619753 619936 + 107 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414583.1 exonerate:protein2genome:local gene 619754 619936 107 + . gene_id 1 ; sequence NvOr103 ; gene_orientation . KQ414583.1 exonerate:protein2genome:local cds 619754 619936 . + . KQ414583.1 exonerate:protein2genome:local exon 619754 619936 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local similarity 619754 619936 107 + . alignment_id 1 ; Query NvOr103 ; Align 619754 159 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr95PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 120 -> 213 Target range: 3178021 -> 3178300 121 : ProTyrAspLeuSerSerProValValTyrZedLeuSerPheLeuHisGlnSerIl : 139 ||||||||||||||||||! ! !:!!||| :!!|||.!.|||||||||!!!|| ProTyrAspLeuSerSerGlnLysLeuTyrThrIleSerLeuLeuHisGlnThrIl 3178022 : CCTTACGATTTGTCCTCGCAAAAATTGTACACGATATCTCTGTTGCATCAAACGAT : 3178076 140 : eAlaAlaIleLeuLeuAlaAlaIleGlyIleIleAsnAspAlaLeuIleAlaGlyP : 158 |!.! !!!::!!! !||| !! !.!!:!: !|||!!:.!!||||||||||||. eGlyLeuMetValCysAlaAsnThrSerValAlaAsnGluThrLeuIleAlaGlyL 3178077 : AGGCCTGATGGTCTGTGCGAACACCAGCGTGGCAAACGAAACACTTATCGCAGGGC : 3178133 159 : heMetLeuGlnValSerAspGlnLeuGluIleSerAlaHisArgIleGlnGluMet : 176 !.|||:!!|||!.!.!!! |||!!!||||||! !..!|||||| ::!.!.:!: euMetIleGlnAlaGlyAlaGlnPheGluIlePheCysHisArgAlaArgAsnLeu 3178134 : TGATGATACAAGCTGGCGCGCAATTCGAGATATTTTGCCATCGAGCGAGAAATCTA : 3178187 177 : ProAsnTyrValThrGluAlaLeuLysValArgLysSerSerAspGluValArgLe : 195 !! ! :!! !!!:.!! !!:! !!!!:!!|||!!!!!:! !!!:! ThrAlaLeuLeuLeuAspThrArgArgAsnSerGluSerArgGluAlaPheLysTh 3178188 : ACCGCCCTACTCTTGGATACCAGAAGAAACAGCGAGTCTAGAGAAGCTTTTAAGAC : 3178244 196 : uLeuGluLysArgLeuLeuGluGluAsnValLysHisHisAsnHisIlePheArg : 213 ! ! !!.|||:::||| ... |||::!:!!||| .!.:!!!:!::: rArgCysAsnArgIleLeuGlyAsnPheValGluTyrHisLeuGluValTyrLys 3178245 : CAGATGTAATCGaatacttggaaatttcgtggaATATCATCTGGAAGTTTACaag : 3178300 vulgar: NvOr95PSE 120 213 . KQ414646.1 3178021 3178300 + 149 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178022 3178300 149 + . gene_id 1 ; sequence NvOr95PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178022 3178300 . + . KQ414646.1 exonerate:protein2genome:local exon 3178022 3178300 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178022 3178300 149 + . alignment_id 1 ; Query NvOr95PSE ; Align 3178022 121 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr95PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 221 -> 278 Target range: 3155832 -> 3156003 222 : PheTyrGluIleValValCysGlnPheLeuValSerValLeuAlaIleCysValSe : 240 ||| ! ! :!! !! !|||||| !||||||..!|||||||||||| !!!: PheGluMetAlaIlePheThrGlnPheAlaValSerThrLeuAlaIleCysPheAs 3155833 : TTCGAGATGGCGATTTTCACTCAATTCGCGGTGAGTACGCTGGCGATATGCTTCAA : 3155887 241 : rValTyrGlnIleSerValGlySerSerAsnLysValGluLeuIleThrPheValL : 259 !:!!|||! !:!!!!!! !..!..! !!.. !:!!..!! !:!: !.!.:!!: nLeuTyrLeuLeuThrGlySerAspValThrProIleArgTyrValGluIleIleM 3155888 : TCTTTACCTATTAACAGGATCAGATGTGACGCCGATTAGGTATGTGGAAATAATCA : 3155944 260 : euTyrLeuValCysMetLeuGlnGlnLeuPheValTyrCysTyrPheGlyCysGlu : 277 !!||| ! !||||||||| !|||:!!|||:!!||||||!::!:!||| !||| etTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysTrpTyrGlyAsnGlu 3155945 : TGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTGGTACGGGAACGAA : 3155998 278 : Ile : 278 :!! Val 3155999 : GTT : 3156003 vulgar: NvOr95PSE 221 278 . KQ414646.1 3155832 3156003 + 121 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155833 3156003 121 + . gene_id 2 ; sequence NvOr95PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155833 3156003 . + . KQ414646.1 exonerate:protein2genome:local exon 3155833 3156003 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155833 3156003 121 + . alignment_id 2 ; Query NvOr95PSE ; Align 3155833 222 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr95PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 0 -> 114 Target range: 3149029 -> 3149371 1 : MetLeuSerValGlnPheAsnValMetThrIleAlaGlyIleTrpCysProProAs : 19 !!:||| !! ! ||||||:!!:!!||||||..!||| !||| ! ||| !:: IleLeuArgProAlaPheAsnIleLeuThrIleCysGlyCysTrpArgProCysSe 3149030 : ATCTTACGGCCAGCTTTCAACATACTGACGATCTGCGGATGCTGGAGGCCGTGCTC : 3149084 20 : nTrpProSerThrTrpMetArgIleLeuTyrLysLeuTyrSerPheValValAsnM : 38 :!! ! !!!!||| ! !:! ! !|||! :!!|||!!!.!. !!||| : rCysArgThrThrArgAlaLysAlaAlaTyrIleValTyrThrMetPheValValL 3149085 : GTGCCGAACGACACGCGCCAAGGCCGCGTACATCGTTTACACGATGTTCGTGGTAC : 3149141 39 : etLeuMetTyrThrLeuGlyLeuPheGlnLeuAlaArgLeuIlePheValLysGln : 56 !:|||:!!:!!!:!!!! !!:!: |||... ...:::|||.!. ! !::! euLeuLeuHisSerPheCysIleSerGlnPhePheAsnValIleLeuAsnLeuArg 3149142 : TTTTATTGCACAGCTTCTGCATctcgcaatttttcaacgtgatACTGAACTTGAGA : 3149195 57 : SerPheLysGluPheAsnAspThrPhePheLeuLeuLeuSerThrAsnPheThrCy : 75 !!! ! |||.!.!:!!!:!:!|||!:!:!!!!!:!!:!!:!! !.!.:!!|| ThrAlaAspGluLeuSerGluSerPheTyrMetPheIleAlaSerValLeuSerCy 3149196 : ACGGCGGACGAGCTGAGCGAGAGTTTCTACATGTTCATCGCGTCCGTTCTGTCCTG : 3149252 76 : sIleLysThrAlaCysHisLeuLeuIleGlnLysArgValIleAsnLeuThrAsnM : 94 | !|||! !!.! ! ||| !! !!!. !!!!:!! ! !||| !!..! sCysLysIleValThrLeuLeuThrAsnHisGlySerIleGluIleLeuArgArgA 3149253 : CTGCAAGATCGTCACGCTGCTGACGAACCACGGAAGCATCGAGATCCTCCGGAGGA : 3149309 95 : etPheLysGluAspCysCysIleValArgArgAspGlyGluIleLysValGlnLys : 112 .!.:!!|||!!: |||! ! ! !!!!! !! !||| ! :!!|||!.. rgLeuGluGluGluProCysLysProValSerAlaGluGluAlaValIleGlnSer 3149310 : GACTGGAGGAGGAGCCGTGTAAACCTGTGAGCGCCGAGGAGGCTGTCATACAGAGT : 3149363 113 : LysPhe : 114 |||||| LysPhe 3149364 : AAATTC : 3149371 vulgar: NvOr95PSE 0 114 . KQ414646.1 3149029 3149371 + 114 M 114 342 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3149030 3149371 114 + . gene_id 3 ; sequence NvOr95PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3149030 3149371 . + . KQ414646.1 exonerate:protein2genome:local exon 3149030 3149371 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3149030 3149371 114 + . alignment_id 3 ; Query NvOr95PSE ; Align 3149030 1 342 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr95PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 221 -> 275 Target range: 3150628 -> 3150790 222 : PheTyrGluIleValValCysGlnPheLeuValSerValLeuAlaIleCysValSe : 240 ||| !|||:!!! ! |||.!!||| !|||..!|||!.!:!:||| !!! PheArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuValValCysPheIl 3150629 : TTCAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGGTAGTGTGTTTCAT : 3150683 241 : rValTyrGlnIleSerValGlySerSerAsnLysValGluLeuIleThrPheValL : 259 !:!!|||:!!:!::!! ! ! !! !!! !!.. !:!!! !:!: !||||||| eLeuTyrGluLeuAlaAsnThrProProIleSerSerLysTyrLeuGlnPheValL 3150684 : CCTGTACGAATTGGCGAACACGCCTCCAATCAGCTCCAAGTACCTGCAATTTGTCC : 3150740 260 : euTyrLeuValCysMetLeuGlnGlnLeuPheValTyrCysTyrPheGly : 275 ||||||||!.!||||||:!! !|||:!!||| !!||||||!::!:!||| euTyrLeuAlaCysMetMetThrGlnIlePhePheTyrCysTrpTyrGly 3150741 : TGTACCTGGCCTGTATGATGACGCAGATCTTCTTTTACTGCTGGTACGGC : 3150790 vulgar: NvOr95PSE 221 275 . KQ414646.1 3150628 3150790 + 109 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150629 3150790 109 + . gene_id 4 ; sequence NvOr95PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150629 3150790 . + . KQ414646.1 exonerate:protein2genome:local exon 3150629 3150790 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150629 3150790 109 + . alignment_id 4 ; Query NvOr95PSE ; Align 3150629 222 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr95PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 120 -> 185 Target range: 3164430 -> 3164625 121 : ProTyrAspLeuSerSerProValValTyrZedLeuSerPheLeuHisGlnSerIl : 139 |||||||||! !||| !! !! !:!!!:! |||!!!|||:!!||||||:!!|| ProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAlaIl 3164431 : CCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTAT : 3164485 140 : eAlaAlaIleLeuLeuAlaAlaIleGlyIleIleAsnAspAlaLeuIleAlaGlyP : 158 |||||||! :!!! !..!.!! .!!:!!! ! |||:!!||| !.!!|||! eAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyL 3164486 : AGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCT : 3164542 159 : heMetLeuGlnValSerAspGlnLeuGluIleSerAlaHisArgIleGlnGluMet : 176 !.:!!:!!.!.:!!! ! !|||!!!|||||| !! !||||||:!!::!.!.:!: euLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnVal 3164543 : TGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTT : 3164596 177 : ProAsnTyrValThrGluAlaLeuLys : 185 !!.! ! ! !!!::!!:!!||| LysThrGluGlnAspAspSerValLys 3164597 : AAAACTGAGCAGGATGACTCTGTGAAG : 3164625 vulgar: NvOr95PSE 120 185 . KQ414646.1 3164430 3164625 + 106 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164431 3164625 106 + . gene_id 5 ; sequence NvOr95PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164431 3164625 . + . KQ414646.1 exonerate:protein2genome:local exon 3164431 3164625 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164431 3164625 106 + . alignment_id 5 ; Query NvOr95PSE ; Align 3164431 121 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr97CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 270 Query range: 150 -> 319 Target range: 3177994 -> 3178591 151 : ArgAsnLeuProPheLysThrTrpLeuProTyrAspThrArgSerAsnSerLeuAs : 169 !:!!.!||||||.!.... !|||:!!||||||||| ! !|||.!.!.!||| LysThrLeuProIleSerAspTrpValProTyrAspLeuSerSerGlnLysLeu-- 3177995 : AAGACTTTGCCAATATCCGACTGGGTGCCTTACGATTTGTCCTCGCAAAAATTG-- : 3178049 170 : nTyrTrpLeuSerTyrLeuHisGlnGlyLeuGlyLeuAlaCysCysGlyThrMetG : 188 ||| !:!!||| ||||||||| !:!!|||||| ! !|||!.!!.!! . -TyrThrIleSerLeuLeuHisGlnThrIleGlyLeuMetValCysAlaAsnThrS 3178050 : -TACACGATATCTCTGTTGCATCAAACGATAGGCCTGATGGTCTGTGCGAACACCA : 3178103 189 : lyValMetIleValAsnIleIleThrGlyPheMetGlnGlnAlaCysAlaGlnPhe : 206 !!||| ! !! !!..:!!|||.!!|||.!.||| !|||||| !!||||||||| erValAlaAsnGluThrLeuIleAlaGlyLeuMetIleGlnAlaGlyAlaGlnPhe 3178104 : GCGTGGCAAACGAAACACTTATCGCAGGGCTGATGATACAAGCTGGCGCGCAATTC : 3178157 207 : GluIleLeuAspSerArgTrpArgAsnLeuProLys<->IleValGluIleAlaAr : 224 ||||||!!! ! !||| !||||||||| !! :!!:!!!!:! ! !|| GluIlePheCysHisArgAlaArgAsnLeuThrAlaLeuLeuLeuAspThrArgAr 3178158 : GAGATATTTTGCCATCGAGCGAGAAATCTAACCGCCCTACTCTTGGATACCAGAAG : 3178214 225 : gSerArgTrpSerAspSerAlaAlaAspGluHisGluAsnIleMetLeuSerGlnT : 243 |!:!!!! !||| ..!||| ! ! ... ||| :::|||......: gAsnSerGluSerArgGluAlaPheLysThrArgCysAsnArgIleLeuGlyAsnP 3178215 : AAACAGCGAGTCTAGAGAAGCTTTTAAGACCAGATGTAATCGaatacttggaaatt : 3178271 244 : yrIleArgHisHisIleHisValTyr{Gl} >>>> Target Intron 1 >>> : 252 :::::..!:!!|||:!:.!.||||||{:!} 87 bp heValGluTyrHisLeuGluValTyr{Ly}++ 3178272 : tcgtggaATATCATCTGGAAGTTTAC{aa}gt........................ : 3178302 253 : > {u}TyrMetAsnGluPheValLysThrPheAsnIleIleIleLeuValGlnPh : 269 {!}!:!! .!. ! ! !! ..!|||.!. !!!:|||!!!:!!||||| ++{s}PheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLeuGlnPh 3178303 : .ag{a}TTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCTGCAATT : 3178436 270 : eCysValSerSerValValIleThrIleSerValTyrGlnMetSer<->IleLysS : 287 |! !:!!||||||..!|||:!: !:!:|||:!!|||:!!|||||| |||!!. eSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrIleAsnP 3178437 : TTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGATTAATC : 3178493 288 : erLeuGlyLeuGluTrpPheMetValPheGlyTyrAlaValSerMetLeuThrGlu : 305 !!!!!.!!:!!.!.!:: !! ! ! !..!||| ! !!!!|||||||||:!! roPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeuThrGln 3178494 : CATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACGCAG : 3178547 306 : PhePheLeuTyrCysTrpPheGlyAsnGluValThrLeuLys : 319 ! !:!|||||||||||||||||||||||||||||||||||| ValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys 3178548 : GTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: NvOr97CTE 150 319 . KQ414646.1 3177994 3178591 + 270 M 18 54 G 1 0 M 49 147 G 0 3 M 33 99 S 0 2 5 0 2 I 0 83 3 0 2 S 1 1 M 32 96 G 0 3 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3177995 3178591 270 + . gene_id 1 ; sequence NvOr97CTE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3177995 3178299 . + . KQ414646.1 exonerate:protein2genome:local exon 3177995 3178299 . + . insertions 3 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3178300 3178301 . + . intron_id 1 ; splice_site "gt" KQ414646.1 exonerate:protein2genome:local intron 3178300 3178386 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3178385 3178386 . + . intron_id 0 ; splice_site "ag" KQ414646.1 exonerate:protein2genome:local cds 3178387 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178387 3178591 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3177995 3178591 270 + . alignment_id 1 ; Query NvOr97CTE ; Align 3177995 151 54 ; Align 3178049 170 147 ; Align 3178199 219 99 ; Align 3178388 253 96 ; Align 3178487 285 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr97CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 258 -> 319 Target range: 3165001 -> 3165184 259 : LysThrPheAsnIleIleIleLeuValGlnPheCysValSerSerValValIleTh : 277 :!! !|||!!.:!:|||:!::!! !|||||||||:!!|||! ! !|||||| GluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIleCy 3165002 : GAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTG : 3165056 278 : rIleSerValTyrGlnMetSerIleLysSerLeuGlyLeuGluTrpPheMetValP : 296 !.!!!:!:!!|||!:!|||!!! ! !.!:!!! :::::: :::. sPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIleI 3165057 : CTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaatca : 3165113 297 : heGlyTyrAlaValSerMetLeuThrGluPhePheLeuTyrCysTrpPheGlyAsn : 314 !. !|||:!! !!!!!! :!!|||:!!.!.|||! !|||||||||!:!|||||| leLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsn 3165114 : TACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGGCAAC : 3165167 315 : GluValThrLeuLys : 319 ||||||! !! !||| GluValLysHisLys 3165168 : GAAGTGAAACATAAG : 3165184 vulgar: NvOr97CTE 258 319 . KQ414646.1 3165001 3165184 + 124 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3165002 3165184 124 + . gene_id 2 ; sequence NvOr97CTE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3165002 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3165002 3165184 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3165002 3165184 124 + . alignment_id 2 ; Query NvOr97CTE ; Align 3165002 259 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr97CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 258 -> 316 Target range: 3158473 -> 3158647 259 : LysThrPheAsnIleIleIleLeuValGlnPheCysValSerSerValValIleTh : 277 :!! !|||!!.:!:|||:!::!! !|||||||||:!!|||! ! !|||||| GluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIleCy 3158474 : GAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTG : 3158528 278 : rIleSerValTyrGlnMetSerIleLysSerLeuGlyLeuGluTrpPheMetValP : 296 !.!!!:!:!!|||!:!|||!!! ! !.!:!!! :::::: :::. sPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIleI 3158529 : CTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaatca : 3158585 297 : heGlyTyrAlaValSerMetLeuThrGluPhePheLeuTyrCysTrpPheGlyAsn : 314 !. !|||:!! !!!!!! :!!|||:!!.!.|||! !|||||||||!:!|||||| leLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsn 3158586 : TACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGTTGGTACGGCAAC : 3158639 315 : GluVal : 316 |||||| GluVal 3158640 : GAAGTG : 3158647 vulgar: NvOr97CTE 258 316 . KQ414646.1 3158473 3158647 + 123 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158474 3158647 123 + . gene_id 3 ; sequence NvOr97CTE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158474 3158647 . + . KQ414646.1 exonerate:protein2genome:local exon 3158474 3158647 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3158474 3158647 123 + . alignment_id 3 ; Query NvOr97CTE ; Align 3158474 259 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr97CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 143 -> 216 Target range: 3164382 -> 3164598 144 : LeuLeuGlnSerLysGluHisArgAsnLeuProPheLysThrTrpLeuProTyrAs : 162 |||||| !..! ... !|||!!.||| !|||::!.!!|||||||||||||| LeuLeuThrAspPheSerSerArgLysLeuMetPheArgAlaTrpLeuProTyrAs 3164383 : CTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGCATGGTTACCCTACGA : 3164437 163 : pThrArgSerAsnSerLeuAsnTyrTrpLeuSerTyrLeuHisGlnGlyLeuGlyL : 181 | !||| !:!!! !! !!:! |||!!!!:!:!!||||||!.!:!!!.! p---TyrSerProAlaProIlePheIleLeuThrPheValHisGlnAlaIleAlaA 3164438 : T---TACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCG : 3164491 182 : euAlaCysCysGlyThrMetGlyValMetIleValAsnIleIleThrGlyPheMet : 199 !.!! ||| !!||| !.!!|||! :!:! !::!:!! !||||||!!.:!! laThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLeu 3164492 : CGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTG : 3164545 200 : GlnGlnAlaCysAlaGlnPheGluIleLeuAspSerArgTrpArgAsnLeu : 216 .!. !! !..!|||||||||||||||!!: !||| ||||||:!! IleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnVal 3164546 : ATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTT : 3164598 vulgar: NvOr97CTE 143 216 . KQ414646.1 3164382 3164598 + 114 M 19 57 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164383 3164598 114 + . gene_id 4 ; sequence NvOr97CTE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164383 3164598 . + . KQ414646.1 exonerate:protein2genome:local exon 3164383 3164598 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3164383 3164598 114 + . alignment_id 4 ; Query NvOr97CTE ; Align 3164383 144 57 ; Align 3164440 164 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr97CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 258 -> 319 Target range: 3155826 -> 3156012 259 : LysThrPheAsnIleIleIleLeuValGlnPheCysValSerSerValValIleTh : 277 :!! !|||.!.!!: |||!!!..!||||||...||||||!!!:!!!.!||| GluGlnPheGluMetAlaIlePheThrGlnPheAlaValSerThrLeuAlaIleCy 3155827 : GAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGTGAGTACGCTGGCGATATG : 3155881 278 : rIleSerValTyrGlnMetSerIleLysSerLeu<->GlyLeuGluTrpPheMetV : 295 !.!!!:!:!!|||! !:!:!!! !..!..!:!! !:!!..!!:: ! : sPheAsnLeuTyrLeuLeuThrGlySerAspValThrProIleArgTyrValGluI 3155882 : CTTCAATCTTTACCTATTAACAGGATCAGATGTGACGCCGATTAGGTATGTGGAAA : 3155938 296 : alPheGlyTyrAlaValSerMetLeuThrGluPhePheLeuTyrCysTrpPheGly : 313 !!.!! !|||::! !!!!|||||||||:!!.!.|||:!!|||||||||!:!||| leIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysTrpTyrGly 3155939 : TAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTGGTACGGG : 3155992 314 : AsnGluValThrLeuLys : 319 |||||||||! !|||||| AsnGluValLysLeuLys 3155993 : AACGAAGTTAAGCTGAAG : 3156012 vulgar: NvOr97CTE 258 319 . KQ414646.1 3155826 3156012 + 110 M 30 90 G 0 3 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155827 3156012 110 + . gene_id 5 ; sequence NvOr97CTE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155827 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155827 3156012 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155827 3156012 110 + . alignment_id 5 ; Query NvOr97CTE ; Align 3155827 259 90 ; Align 3155920 289 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr97CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 266 -> 315 Target range: 3153498 -> 3153645 267 : ValGlnPheCysValSerSerValValIleThrIleSerValTyrGlnMetSerIl : 285 :!!||||||...:!!|||!!!! !!.!||| !.!!!:!:!!|||!:!||||||:! IleGlnPheAlaIleSerThrGlyAlaIleCysPheAsnLeuTyrArgMetSerVa 3153499 : ATACAGTTCGCGATAAGCACAGGAGCGATATGCTTCAATCTCTATCGAATGTCGGT : 3153553 286 : eLysSerLeuGlyLeuGluTrpPheMetValPheGlyTyrAlaValSerMetLeuT : 304 :! !..!||||||! !:!!!:: ! !.!!!. ! !.!!|||!!!:!:|||. lIleGluLeuGlyProLysPheValGluAlaLeuThrIleThrValCysLeuLeuA 3153554 : GATAGAACTCGGTCCAAAGTTTGTGGAAGCGTTAACTATCACAGTATGCTTACTCG : 3153610 305 : hrGluPhePheLeuTyrCysTrpPheGlyAsnGlu : 315 !!:!!.!.|||! !|||||||||!::||||||::: laGlnIlePheTyrTyrCysTrpTyrGlyAsnAsp 3153611 : CGCAGATATTTTACTATTGTTGGTAcggtaacgat : 3153645 vulgar: NvOr97CTE 266 315 . KQ414646.1 3153498 3153645 + 104 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153499 3153645 104 + . gene_id 6 ; sequence NvOr97CTE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153499 3153645 . + . KQ414646.1 exonerate:protein2genome:local exon 3153499 3153645 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153499 3153645 104 + . alignment_id 6 ; Query NvOr97CTE ; Align 3153499 267 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr97CTE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 143 -> 216 Target range: 3157854 -> 3158070 144 : LeuLeuGlnSerLysGluHisArgAsnLeuProPheLysThrTrpLeuProTyrAs : 162 |||||| !..! ...:!!|||!!.||| !|||::!.!!|||:!!|||||||| LeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrAs 3157855 : CTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACGA : 3157909 163 : pThrArgSerAsnSerLeuAsnTyrTrpLeuSerTyrLeuHisGlnGlyLeuGlyL : 181 | !||| !:!!! !! !!:! |||!!!! !:!!||||||!.!:!!!.!! p---TyrSerProAlaProIlePheIleLeuThrSerValHisGlnAlaIleAlaS 3157910 : T---TACTCCCCTGCGCCCATTTTTATCCTTACCTCCGTCCATCAAGCTATAGCCT : 3157963 182 : euAlaCysCysGlyThrMetGlyValMetIleValAsnIleIleThrGlyPheMet : 199 !.!! ||| !!||| ! !|||! :!:! !!.!:!! !||||||!!.:!! erThrIleCysCysThrSerThrValThrValAspThrLeuTyrThrGlyLeuLeu 3157964 : CGACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTATACACTGGCTTGTTG : 3158017 200 : GlnGlnAlaCysAlaGlnPheGluIleLeuAspSerArgTrpArgAsnLeu : 216 .!. !! !..!|||||||||||||||!!: !||| ||||||:!! IleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnVal 3158018 : ATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTT : 3158070 vulgar: NvOr97CTE 143 216 . KQ414646.1 3157854 3158070 + 103 M 19 57 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157855 3158070 103 + . gene_id 7 ; sequence NvOr97CTE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3157855 3158070 . + . KQ414646.1 exonerate:protein2genome:local exon 3157855 3158070 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3157855 3158070 103 + . alignment_id 7 ; Query NvOr97CTE ; Align 3157855 144 57 ; Align 3157912 164 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr96 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 228 Query range: 115 -> 317 Target range: 3177901 -> 3178591 116 : SerCysArgLysIleIleIleSerLeuLeuIleLeuValGluThrSerAlaPhePh : 134 |||! !||||||:!:! !|||! !! ! !|||||| !|||:!!:!!||||||!! SerSerArgLysLeuThrIleTyrCysGluIleLeuAsnGluSerAlaAlaPheLe 3177902 : TCTTCCAGAAAACTGACAATCTACTGCGAGATCCTGAACGAATCCGCCGCATTCTT : 3177956 135 : eValValValAlaProLeuCysGlyThrMetAspAsnGlnAspLeuProTyrGlnV : 153 .!.!..!||||||! !! ! !! ! !!!: !::!:!! !|||||| ...! uAlaThrValAlaGlnTyrAsnGluPheIleArgSerLysThrLeuProIleSerA 3177957 : AGCTACGGTAGCACAGTACAACGAATTCATACGCTCCAAGACTTTGCCAATATCCG : 3178013 154 : alLeuLeuProTyrAspLeuSerAsnLysLeuPhePheTrpLeuThrPheValHis : 171 !! !:!!|||||||||||||||::::!! !!!.!:! !:!!:!!.!.:!!||| spTrpValProTyrAspLeuSerSerGlnLysLeuTyrThrIleSerLeuLeuHis 3178014 : ACTGGGTGCCTTACGATTTGTCCTCGCAAAAATTGTACACGATATCTCTGTTGCAT : 3178067 172 : HisSerPheGlyAlaValLeuPheThrAlaIleSerIleThrAsnAspAlaValIl : 190 !!.!!!.!.||| !:!!:!!! !.!! !! !|||:!:.!!|||!!:.!!:!!|| GlnThrIleGlyLeuMetValCysAlaAsnThrSerValAlaAsnGluThrLeuIl 3178068 : CAAACGATAGGCCTGATGGTCTGTGCGAACACCAGCGTGGCAAACGAAACACTTAT : 3178124 191 : eThrGlyPheMetMetHisValCysGlyGlnLeuIleIleLeuGlnHisArgPheA : 209 |.!!|||.!.|||!!:!!.!.! !!!.!|||!!! |||!!! |||||| eAlaGlyLeuMetIleGlnAlaGlyAlaGlnPheGluIlePheCysHisArgAlaA 3178125 : CGCAGGGCTGATGATACAAGCTGGCGCGCAATTCGAGATATTTTGCCATCGAGCGA : 3178181 210 : laLeuLeuSerArgSerLeuAlaAsnGluValSerLysLysGlyArgIleThrAsp : 227 ! !|||!!! ! !||| !:!! !!!!!!.!..! ! !! ! !! ! rgAsnLeuThrAlaLeuLeuLeuAspThrArgArgAsnSerGluSerArgGluAla 3178182 : GAAATCTAACCGCCCTACTCTTGGATACCAGAAGAAACAGCGAGTCTAGAGAAGCT : 3178235 228 : PheAspMetMetLeuGluArgHisTrpLeuArgGlnIleValTyrHis{Gl} >> : 244 ||| ! ! ! ! !.!.||| ... ::: !||||||{! } PheLysThrArgCysAsnArgIleLeuGlyAsnPheValGluTyrHis{Le}+- 3178236 : TTTAAGACCAGATGTAATCGaatacttggaaatttcgtggaATATCAT{CT}gg.. : 3178290 245 : >> Target Intron 1 >>>> {n}AsnHisIleSerAsnIleAlaLysLysI : 254 84 bp {!}||| ||| ....!!.!!:!!! !: -+{u}AsnPheIleCysArgPheThrGlnThrV 3178291 : .......................gg{a}aatttcatttgtagaTTTACACAGACGG : 3178400 255 : leCysSerThrPheAsnGluIleValIleCysGlnPhePheIleSerGlyLeuGlu : 272 !: !!!!..!|||.!. ! !!::!!.!! ||||||! !||||||..! !! ! alAsnThrValPheGlnTyrMetIlePheLeuGlnPheSerIleSerSerThrVal 3178401 : TGAACACTGTGTTCCAGTACATGATTTTCCTGCAATTTTCCATCAGTTCGACGGTG : 3178454 273 : IleCysValSerValTyrGlnLeuSerValArgAsnAsnAsnThrValGluLeuCy : 291 :!:|||:!!|||:!!|||:!!:!!|||..!! !||| !!:!:!!.!.!!! LeuCysLeuSerIleTyrLysMetSerThrIleAsnProPheSerMetAsnPheVa 3178455 : CTGTGTTTGAGCATCTATAAAATGTCGACGATTAATCCATTTAGCATGAACTTCGT : 3178511 292 : sThrTyrAlaIleTyrLeuMetValMetLeuGlyGlnPhePheValTyrCysTyrP : 310 ! !! !||| !|||||| !|||||| !||| ! !:!:!!||||||!::| lTrpCysAlaSerTyrLeuCysCysMetLeuThrGlnValTyrLeuTyrCysTrpP 3178512 : CTGGTGCGCCTCCTATTTATGCTGTATGCTCACGCAGGTGTATTTATACTGTTGGT : 3178568 311 : heGlyAsnGluIleThrLeuGln : 317 |||||||||||:!:||||||:!! heGlyAsnGluValThrLeuLys 3178569 : TCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: NvOr96 115 317 . KQ414646.1 3177901 3178591 + 228 M 128 384 S 0 2 5 0 2 I 0 80 3 0 2 S 1 1 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3177902 3178591 228 + . gene_id 1 ; sequence NvOr96 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3177902 3178287 . + . KQ414646.1 exonerate:protein2genome:local exon 3177902 3178287 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178288 3178289 . + . intron_id 1 ; splice_site "GG" KQ414646.1 exonerate:protein2genome:local intron 3178288 3178371 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3178370 3178371 . + . intron_id 0 ; splice_site "gg" KQ414646.1 exonerate:protein2genome:local cds 3178372 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178372 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3177902 3178591 228 + . alignment_id 1 ; Query NvOr96 ; Align 3177902 116 384 ; Align 3178373 245 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr103 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 257 -> 392 Target range: 3155805 -> 3156416 258 : ArgLeuGlyAsnTyrLeuAsnGlnGluPheArgGlyIleLeuAlaGlyGlnValMe : 276 |||!!! ! ! :!!|||:!!:!!|||..! ! :!! ! !||| !! ArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAl 3155806 : AGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGC : 3155860 277 : tIleThrIleProAsnIleCysIleAsnValTyrLeuLeuSerGlnHisArgGlyG : 295 !:!:!:!! ! ! ||||||.!!|||:!!|||||||||!!! !! !! aValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThr---GlySerAspV 3155861 : GGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACA---GGATCAGATG : 3155914 296 : lyIleThrLeuHisLeuValAspSerPheLeuCysPheThrThrCysLeuMetGln : 313 !! !!:!!...! !|||!!:! !.!!:!!! ! !!:! ! |||! !||| alThrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGln 3155915 : TGACGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAA : 3155968 314 : IlePheLeuTyrCysTrpTyrGlyAsnLysIleIleLeuLeu >>>> Target : 328 ||||||:!!||||||||||||||||||:!!:!!! ||| ! 73 IlePheIleTyrCysTrpTyrGlyAsnGluValLysLeuLys++ 3155969 : ATATTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAGgt............ : 3156015 329 : Intron 1 >>>> SerIleAspValAlaAsnThrAlaTyrThrThrAsnTrpLe : 341 bp |||:!!!!::!!:!!|||! ! !!:! ! !:!!||| ++SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpTh 3156016 : .............agAGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGAC : 3156125 342 : uSerLeuAsnIleSerSerLysLysLysLeuLeuThrIleMetValArgAlaThrA : 360 ! !!!!!:!!! !:!!!!!|||::!!!.:!!||||||!!:|||:!!||||||:!! rProPheAspLysAlaThrLysArgAsnIleLeuThrMetMetMetArgAlaSerS 3156126 : ACCGTTCGATAAAGCTACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGT : 3156182 361 : rgSerIleGln<->PheAlaAlaGlyThrPheIleMetAsnIleAspSerPheIle : 377 ! !!|||:!! .!!::!!.! !!..!.!! !:!!|||:!!|||||||||:!! erProIleGluIleIleSerValArgValLeuSerValAsnLeuAspSerPheVal 3156183 : CGCCAATTGAAATCATCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTC : 3156236 378 : Glu >>>> Target Intron 2 >>>> IleIleLysThrSerTyrSerAla : 386 ! 133 bp :!::!:|||||||||||||||||| Ala++ ++LeuLeuLysThrSerTyrSerAla 3156237 : GCTgt.........................agTTGCTGAAAACTTCTTACTCGGCG : 3156396 387 : TyrArgValLeuGlnLys : 392 |||!.!|||||||||::: TyrAsnValLeuGlnArg 3156397 : TACAACGTTCTCCAACGC : 3156416 vulgar: NvOr103 257 392 . KQ414646.1 3155805 3156416 + 174 M 33 99 G 1 0 M 36 108 5 0 2 I 0 69 3 0 2 M 36 108 G 0 3 M 15 45 5 0 2 I 0 129 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155806 3156416 174 + . gene_id 1 ; sequence NvOr103 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3155806 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155806 3156012 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3156013 3156014 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156013 3156085 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3156084 3156085 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156086 3156241 . + . KQ414646.1 exonerate:protein2genome:local exon 3156086 3156241 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156242 3156243 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156242 3156374 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3156373 3156374 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156375 3156416 . + . KQ414646.1 exonerate:protein2genome:local exon 3156375 3156416 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155806 3156416 174 + . alignment_id 1 ; Query NvOr103 ; Align 3155806 258 99 ; Align 3155905 292 108 ; Align 3156086 328 108 ; Align 3156197 364 45 ; Align 3156375 379 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr103 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 256 -> 393 Target range: 3160720 -> 3161363 257 : PheArgLeuGlyAsnTyrLeuAsnGlnGluPheArgGlyIleLeuAlaGlyGlnVa : 275 ||||||!!!!.!.!. !:!!||| !:!!|||!!! !! :!!||| !||| ! PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3160721 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3160775 276 : lMetIleThrIleProAsnIleCysIleAsnValTyrLeuLeuSerGlnHisArgG : 294 !:!!:!:|||! ! !!..!!:|||.!!|||:!!!:!! !|||!!!||| !!:!! eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3160776 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3160832 295 : lyGlyIleThrLeuHisLeuValAspSerPheLeuCysPheThrThrCysLeuMet : 312 ! ! !:!! !:!! !!|||:!! ..!!:! !!! alTyrSerGlnValLeuAlaLeuIleProPheMet------ValSerValPheAla 3160833 : TGTATTCGCAAGTTTTAGCATTGATACCGTTCATG------GTCAGTGTGTTCGCA : 3160880 313 : GlnIlePheLeuTyrCysTrpTyrGlyAsnLysIle<->IleLeu >>>> Targ : 327 |||||||||! !! !|||||||||||||||:!!! ! :!: ! GlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys++ 3160881 : CAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGgt......... : 3160930 328 : et Intron 1 >>>> LeuSerIleAspValAlaAsnThrAlaTyrThrThrAs : 339 74 bp |||:!!!!::!!..!:!!|||!.!!:! !!:!|| ++---SerLeuGluIleCysAspThrValPheGluSerAs 3160931 : ................ag---AGCCTTGAAATTTGCGACACAGTATTCGAAAGCAA : 3161035 340 : nTrpLeuSerLeuAsnIleSerSerLysLysLysLeuLeuThrIleMetValArgA : 358 |||| !:!!|||!:! |||!!!||||||! !|||||||||||||||:!!|||: nTrpThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgS 3161036 : CTGGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCT : 3161092 359 : laThrArgSerIleGlnPhe<->AlaAlaGlyThrPheIleMetAsnIleAspSer : 375 !! !!:! !!|||:!!||| !.!||| !..!||| !:!:|||:!:!!:||| erLeuLysProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSer 3161093 : CGTTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCT : 3161146 376 : PheIleGlu >>>> Target Intron 2 >>>> IleIleLysThrSerTyr : 384 |||! !... 161 bp :!::!:|||||||||||| PheLysSer++ ++LeuValLysThrSerTyr 3161147 : TTTAAAAGTgt.........................agTTGGTGAAAACTTCCTAT : 3161334 385 : SerAlaTyrArgValLeuGlnLysThr : 393 |||!.!!:!!.!|||:!!|||:!!||| SerValPheAsnValIleGlnGlnThr 3161335 : TCGGTATTCAACGTAATCCAGCAAACG : 3161363 vulgar: NvOr103 256 393 . KQ414646.1 3160720 3161363 + 153 M 49 147 G 2 0 M 17 51 G 0 3 M 2 6 5 0 2 I 0 70 3 0 2 G 1 0 M 37 111 G 0 3 M 14 42 5 0 2 I 0 157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160721 3161363 153 + . gene_id 2 ; sequence NvOr103 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3160721 3160927 . + . KQ414646.1 exonerate:protein2genome:local exon 3160721 3160927 . + . insertions 3 ; deletions 2 KQ414646.1 exonerate:protein2genome:local splice5 3160928 3160929 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3160928 3161001 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3161000 3161001 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3161002 3161157 . + . KQ414646.1 exonerate:protein2genome:local exon 3161002 3161157 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3161158 3161159 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3161158 3161318 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3161317 3161318 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3161319 3161363 . + . KQ414646.1 exonerate:protein2genome:local exon 3161319 3161363 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160721 3161363 153 + . alignment_id 2 ; Query NvOr103 ; Align 3160721 257 147 ; Align 3160868 308 51 ; Align 3160922 325 6 ; Align 3161002 328 111 ; Align 3161116 365 42 ; Align 3161319 379 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr103 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 256 -> 393 Target range: 3174931 -> 3175574 257 : PheArgLeuGlyAsnTyrLeuAsnGlnGluPheArgGlyIleLeuAlaGlyGlnVa : 275 ||||||!!!!.!.!. !:!!||| !:!!|||!!! !! :!!||| !||| ! PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3174932 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3174986 276 : lMetIleThrIleProAsnIleCysIleAsnValTyrLeuLeuSerGlnHisArgG : 294 !:!!:!:|||! ! !!..!!:|||.!!|||:!!!:!! !|||!!!||| !!:!! eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3174987 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3175043 295 : lyGlyIleThrLeuHisLeuValAspSerPheLeuCysPheThrThrCysLeuMet : 312 ! ! !:!! !:!! !!|||:!! ..!!:! !!! alTyrSerGlnValLeuAlaLeuIleProPheMet------ValSerValPheAla 3175044 : TGTATTCGCAAGTTTTAGCATTGATACCGTTCATG------GTCAGTGTGTTCGCA : 3175091 313 : GlnIlePheLeuTyrCysTrpTyrGlyAsnLysIle<->IleLeu >>>> Targ : 327 |||||||||! !! !|||||||||||||||:!!! ! :!: ! GlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys++ 3175092 : CAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGgt......... : 3175141 328 : et Intron 1 >>>> LeuSerIleAspValAlaAsnThrAlaTyrThrThrAs : 339 74 bp |||:!!!!::!!..!:!!|||!.!!:! !!:!|| ++---SerLeuGluIleCysAspThrValPheGluSerAs 3175142 : ................ag---AGCCTTGAAATTTGCGACACAGTATTCGAAAGCAA : 3175246 340 : nTrpLeuSerLeuAsnIleSerSerLysLysLysLeuLeuThrIleMetValArgA : 358 |||| !:!!|||!:! |||!!!||||||! !|||||||||||||||:!!|||: nTrpThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgS 3175247 : CTGGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCT : 3175303 359 : laThrArgSerIleGlnPhe<->AlaAlaGlyThrPheIleMetAsnIleAspSer : 375 !! !!:! !!|||:!!||| !.!||| !..!||| !:!:|||:!:!!:||| erLeuLysProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSer 3175304 : CGTTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCT : 3175357 376 : PheIleGlu >>>> Target Intron 2 >>>> IleIleLysThrSerTyr : 384 |||! !... 161 bp :!::!:|||||||||||| PheLysSer++ ++LeuValLysThrSerTyr 3175358 : TTTAAAAGTgt.........................agTTGGTGAAAACTTCCTAT : 3175545 385 : SerAlaTyrArgValLeuGlnLysThr : 393 |||!.!!:!!.!|||:!!|||:!!||| SerValPheAsnValIleGlnGlnThr 3175546 : TCGGTATTCAACGTAATCCAGCAAACG : 3175574 vulgar: NvOr103 256 393 . KQ414646.1 3174931 3175574 + 153 M 49 147 G 2 0 M 17 51 G 0 3 M 2 6 5 0 2 I 0 70 3 0 2 G 1 0 M 37 111 G 0 3 M 14 42 5 0 2 I 0 157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174932 3175574 153 + . gene_id 3 ; sequence NvOr103 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3174932 3175138 . + . KQ414646.1 exonerate:protein2genome:local exon 3174932 3175138 . + . insertions 3 ; deletions 2 KQ414646.1 exonerate:protein2genome:local splice5 3175139 3175140 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3175139 3175212 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3175211 3175212 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3175213 3175368 . + . KQ414646.1 exonerate:protein2genome:local exon 3175213 3175368 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3175369 3175370 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3175369 3175529 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3175528 3175529 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3175530 3175574 . + . KQ414646.1 exonerate:protein2genome:local exon 3175530 3175574 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3174932 3175574 153 + . alignment_id 3 ; Query NvOr103 ; Align 3174932 257 147 ; Align 3175079 308 51 ; Align 3175133 325 6 ; Align 3175213 328 111 ; Align 3175327 365 42 ; Align 3175530 379 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr103 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 134 -> 224 Target range: 3180065 -> 3180335 135 : TyrAlaIleGlyIleIleAlaGlyLeuAlaThrLysAlaIleMetProMetLeuAs : 153 |||.!!!!:! !:!! !..!:!!|||:!!! !:!!! !!:!::!!!. TyrThrMetValValGluMetSerValAlaSerThrIleLeuAsnSerLeuValTh 3180066 : TACACAATGGTAGTCGAGATGTCGGTCGCCTCGACTATTTTAAACTCGTTAGTGAC : 3180120 154 : nSerAsnSerAlaTrpValLeuProIleGluAlaTrpTyrProTyrAsnThrSerA : 172 !!:! !..! ! ! !||| !! !..!!.!|||!:!||||||:!! !!!!! rAsnPheGlnHisGlyArgLeuThrTyrArgGlyTrpPheProTyrAspTyrThrT 3180121 : CAACTTTCAACACGGCAGACTAACCTACAGAGGCTGGTTCCCTTACGATTACACGA : 3180177 173 : snLeuLysAsnTyrLeuPheAlaTyrThrGlnGlnLeuMetGlyGlyIleProLeu : 190 .! ! ! !!:!! !!!..!!|||.!!! !||||||:!: !!! !:!! !! ! hrAlaValLeuPheProLeuThrTyrAlaLeuGlnLeuLeuCysValLeuValTyr 3180178 : CCGCCGTACTTTTTCCATTGACATACGCTCTGCAGCTATTATGCGTGCTCGTATAT : 3180231 191 : IleCysLeuHisIleSerValAspSerLeuPheValGlyLeuIleLeuGlnMetCy : 209 !!! :!!|||:!!|||||||||! !|||||| !!||||||:!::!!|||:!!|| SerTrpIleHisValSerValAspIleLeuPhePheGlyLeuLeuMetGlnLeuCy 3180232 : TCCTGGATCCACGTTTCAGTGGATATTCTCTTCTTCGGACTGTTGATGCAACTGTG : 3180288 210 : sIleGlnLeuLysLeuLeuGlnTyrArgLeuGlnLysThrPheSer : 224 | !|||!!! ! :::||| |||......!..! ! ||| sCysGlnPheAspIleLeuPheSerArgPheSerSerIleThrSer 3180289 : CTGTCAATTCGAcattctcttctctcgtttcAGTAGCATAACGTCG : 3180335 vulgar: NvOr103 134 224 . KQ414646.1 3180065 3180335 + 104 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180066 3180335 104 + . gene_id 4 ; sequence NvOr103 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180066 3180335 . + . KQ414646.1 exonerate:protein2genome:local exon 3180066 3180335 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180066 3180335 104 + . alignment_id 4 ; Query NvOr103 ; Align 3180066 135 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr103 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 257 -> 324 Target range: 3158452 -> 3158647 258 : ArgLeuGlyAsnTyrLeuAsnGlnGluPheArgGlyIleLeuAlaGlyGlnValMe : 276 |||!!!..!!!. ! :!!|||:!!||||||!:! !|||||| !..!||| !! ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3158453 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3158507 277 : tIleThrIleProAsnIleCysIleAsnValTyrLeuLeuSerGlnHisArgGlyG : 295 |||!:!!!: !! ||||||.!!|||:!!|||! !:!!!!!||| !!:! sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---- 3158508 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---- : 3158561 296 : lyIleThrLeuHisLeuValAspSerPheLeuCysPheThrThrCysLeuMetGln : 313 !!: ...|||::: .!.|||! !! ! ! ! !:!!! !||| --MetAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGln 3158562 : --ATGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAG : 3158612 314 : IlePheLeuTyrCysTrpTyrGlyAsnLysIle : 324 ||||||! !||||||||||||||||||:!!:!: IlePheTyrTyrCysTrpTyrGlyAsnGluVal 3158613 : ATATTTTACTATTGTTGGTACGGCAACGAAGTG : 3158647 vulgar: NvOr103 257 324 . KQ414646.1 3158452 3158647 + 102 M 36 108 G 2 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158453 3158647 102 + . gene_id 5 ; sequence NvOr103 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158453 3158647 . + . KQ414646.1 exonerate:protein2genome:local exon 3158453 3158647 . + . insertions 0 ; deletions 2 KQ414646.1 exonerate:protein2genome:local similarity 3158453 3158647 102 + . alignment_id 5 ; Query NvOr103 ; Align 3158453 258 108 ; Align 3158561 296 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr103 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 257 -> 324 Target range: 3164980 -> 3165175 258 : ArgLeuGlyAsnTyrLeuAsnGlnGluPheArgGlyIleLeuAlaGlyGlnValMe : 276 |||!!!..!!!. ! :!!|||:!!||||||!:! !|||||| !..!||| !! ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3164981 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3165035 277 : tIleThrIleProAsnIleCysIleAsnValTyrLeuLeuSerGlnHisArgGlyG : 295 |||!:!!!: !! ||||||.!!|||:!!|||! !:!!!!!||| !!:! sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---- 3165036 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---- : 3165089 296 : lyIleThrLeuHisLeuValAspSerPheLeuCysPheThrThrCysLeuMetGln : 313 !!: ...|||::: .!.|||! !! ! ! ! !:!!! !||| --MetAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGln 3165090 : --ATGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAG : 3165140 314 : IlePheLeuTyrCysTrpTyrGlyAsnLysIle : 324 ||||||! !||||||||||||||||||:!!:!: IlePheTyrTyrCysTrpTyrGlyAsnGluVal 3165141 : ATATTTTACTATTGCTGGTACGGCAACGAAGTG : 3165175 vulgar: NvOr103 257 324 . KQ414646.1 3164980 3165175 + 102 M 36 108 G 2 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164981 3165175 102 + . gene_id 6 ; sequence NvOr103 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164981 3165175 . + . KQ414646.1 exonerate:protein2genome:local exon 3164981 3165175 . + . insertions 0 ; deletions 2 KQ414646.1 exonerate:protein2genome:local similarity 3164981 3165175 102 + . alignment_id 6 ; Query NvOr103 ; Align 3164981 258 108 ; Align 3165089 296 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr99 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 10 -> 222 Target range: 3149029 -> 3150314 11 : LeuLeuProIleProPheMetValLeuThrLeuCysGlyThrTrpCysProGluAs : 29 :!!|||! ! ! !!|||! :!!||||||:!!|||||| !||| ! ||| :: IleLeuArgProAlaPheAsnIleLeuThrIleCysGlyCysTrpArgProCysSe 3149030 : ATCTTACGGCCAGCTTTCAACATACTGACGATCTGCGGATGCTGGAGGCCGTGCTC : 3149084 30 : nTrpSerLysLysArgLysArgIleTyrLysCysValThrThrValLeuValSerL : 48 :!! !!! !! !||| !:! ! ! !||| !|||:!!!!!||| !| rCysArgThrThrArgAlaLysAlaAlaTyrIleValTyrThrMetPheValValL 3149085 : GTGCCGAACGACACGCGCCAAGGCCGCGTACATCGTTTACACGATGTTCGTGGTAC : 3149141 49 : euGlyIleIleLeuLeuValGluMetLeuValPheIleIleValLysSerGlyLys : 66 || !:!: ! !!!! ! ||| :::::! !!:! !!:! euLeuLeuHisSerPheCysIleSerGlnPhePheAsnValIleLeuAsnLeuArg 3149142 : TTTTATTGCACAGCTTCTGCATctcgcaatttttcaacgtgatACTGAACTTGAGA : 3149195 67 : AspAsnIleAspLeuGluAsnIlePheAlaThrIleCysIleAlaValGlyLeuTy : 85 !!!:|||....!.! !||| !! !.!! ! :!!||| !! !! ThrAlaAspGluLeuSerGluSerPheTyrMetPheIleAlaSerValLeuSerCy 3149196 : ACGGCGGACGAGCTGAGCGAGAGTTTCTACATGTTCATCGCGTCCGTTCTGTCCTG : 3149252 86 : rLysLysIleAsnIleLeuTyrHisArgProLysLeuMetAsnPheIleSerAsnT : 104 ! |||||| !! ||| !.!! ! ! !!!:.!..!!:!! !!!.. sCysLysIleValThrLeuLeuThrAsnHisGlySerIleGluIleLeuArgArgA 3149253 : CTGCAAGATCGTCACGCTGCTGACGAACCACGGAAGCATCGAGATCCTCCGGAGGA : 3149309 105 : yrThrLysAsnGluTrpAsnLysProLysAsnPheGluGluAlaThrIleHisLeu : 122 !:!!.!.||| ! !|||||| !!:! !|||||||||..!|||!!. ! rgLeuGluGluGluProCysLysProValSerAlaGluGluAlaValIleGlnSer 3149310 : GACTGGAGGAGGAGCCGTGTAAACCTGTGAGCGCCGAGGAGGCTGTCATACAGAGT : 3149363 123 : AsnIleLeuSerGluThr{Ar} >>>> Target Intron 1 >>>> {g}Ty : 130 !!..!! !!!!.!.! !{ !} 649 bp {!}! LysPheAspArgAsnIle{Gl}++ ++{y}Se 3149364 : AAATTCGACAGAAACATC{GG}gt.........................ag{G}TC : 3150036 131 : rIleSerTyrAlaTyrAlaAlaPheIleLeuValSerIleIlePheArgSerIleT : 149 :!:!!! ! !|||.!! !.!.:!: !:!!!!!:!!:!!! !! !! !:!!: rValThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCysMetIleLeuS 3150037 : GGTGACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTGTATGATCCTCT : 3150093 150 : hrProIleLeuGluSerGlyThrPheIleIleLeuProLeuAspAlaCysTyrPro : 167 !! !!:!:|||! ..! !!.! !||| !!! ! |||!! ||| erSerLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgAlaTrpLeuPro 3150094 : CTTCGTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAGCCTGGCTGCCC : 3150147 168 : TyrAsnAlaAspAsnPheIleAlaPheSerLeuThrTyrLeuHisGlnIleIleSe : 186 !:!:!! !..! ! ! !!:!! !:!!.!!|||:!!|||||||||:!!:! PheAspTyrSerLeuProThrTyrTyrTyrIleAlaTyrValHisGlnIleValAl 3150148 : TTCGATTACTCTCTGCCAACTTACTATTACATCGCGTACGTTCATCAGATCGTCGC : 3150204 187 : rGlyValThrLeuThrCysMetHisIleGlyThrAspThrLeuPheValGlyLeuL : 205 ! !:!! ! !:!! ! !:!!:!!!.! !|||..!:!!.!! !||||||| aLeuIleGlyThrSerLeuSerAsnValAlaCysAspValIleIleCysGlyLeuL 3150205 : GCTGATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCATCTGCGGGTTGC : 3150261 206 : euLeuGlnMetAsnTyrGlnLeuHisIleLeuLysAsnArgLeuArgGlnLeu : 222 ||:!!!!. ! !|||! !.!.|||||||||:!!|||:!!!:!:!!:!! euValHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMetLysGluMet 3150262 : TCGTTCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATGAAGGAGATG : 3150314 vulgar: NvOr99 10 222 . KQ414646.1 3149029 3150314 + 112 M 118 354 S 0 2 5 0 2 I 0 645 3 0 2 S 1 1 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3149030 3150314 112 + . gene_id 1 ; sequence NvOr99 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3149030 3149385 . + . KQ414646.1 exonerate:protein2genome:local exon 3149030 3149385 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3149386 3149387 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3149386 3150034 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150033 3150034 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150035 3150314 . + . KQ414646.1 exonerate:protein2genome:local exon 3150035 3150314 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3149030 3150314 112 + . alignment_id 1 ; Query NvOr99 ; Align 3149030 11 354 ; Align 3150036 130 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr105 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 327 -> 385 Target range: 3178743 -> 3178917 328 : HisSerSerGluIleAlaAsnSerIleTyrAspMetAspTrpValArgLeuSerPr : 346 !!.|||..!:!!:!!!.!.!.:!!||||||!!:|||||||||..! !||| !! ! GlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuProTh 3178744 : CAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCCCAC : 3178798 347 : oThrAlaArgLysThrLeuIleIleValMetIleArgSerSerLysProIleGlnI : 365 ! ! !|||||| !|||:!::!::!!||| ||||||!.!::!|||:!!:!!! rAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValLysM 3178799 : CGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTAAAA : 3178855 366 : leArgAlaGlyTyrPheValSerMetAsnLeuArgSerPheLeuSerIleMetLys : 383 !:! !::!|||:!! !!||| !:!:::! !..!||||||:!!|||:!!! !:! etThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerValSerArg 3178856 : TGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTTAGTAGA : 3178909 384 : ThrSer : 385 ! !||| IleSer 3178910 : ATTTCC : 3178917 vulgar: NvOr105 327 385 . KQ414646.1 3178743 3178917 + 124 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178744 3178917 124 + . gene_id 1 ; sequence NvOr105 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178744 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178744 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178744 3178917 124 + . alignment_id 1 ; Query NvOr105 ; Align 3178744 328 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr105 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 158 -> 216 Target range: 3153201 -> 3153375 159 : GluPheProAlaProAlaTrpTyrProTyrAspThrAsnLysProValTyrPheTr : 177 :::||| ..!|||! ||||||||||||!.!! !! ! ! !||| LysPheLysPheArgValTrpLeuProTyrAspThrThrThrGlnProValPheTh 3153202 : aaattcaaatttcgcgtCTGGTTACCTTACGACACTACTACACAACCTGTCTTCAC : 3153256 178 : pLeuAlaTyrValGlnGlnMetPheValGlyGlyAlaThrIleSerMetHisIleG : 196 ||| !||| !||||||!!: !! ! ! !! !!:!:!:!:!!!::!!:!! rLeuIleTyrCysGlnGlnIleValCysThrTrpTyrSerValAsnIleAsnValI 3153257 : TCTGATCTACTGTCAACAGATCGTCTGCACGTGGTACAGCGTGAATATTAACGTCA : 3153313 197 : lyAlaAspThrMetLeuSerGlyLeuMetLeuGlnSerCysIleGlnLeuLysLeu : 214 !..!||| !:!!!!!||||||||||||:!!|||! !||| ! |||::! ! leCysAspCysLeuPheSerGlyLeuMetIleGlnIleCysSerIleLeuArgLys 3153314 : TTTGCGACTGCCTGTTCAGCGGCCTGATGATACAGATTTGCTCAATCTTACGGAAG : 3153367 215 : LeuLys : 216 :!!||| MetLys 3153368 : ATGAAA : 3153375 vulgar: NvOr105 158 216 . KQ414646.1 3153201 3153375 + 100 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153202 3153375 100 + . gene_id 2 ; sequence NvOr105 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153202 3153375 . + . KQ414646.1 exonerate:protein2genome:local exon 3153202 3153375 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153202 3153375 100 + . alignment_id 2 ; Query NvOr105 ; Align 3153202 159 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr102 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 258 -> 391 Target range: 3155805 -> 3156274 259 : ArgPheGlyGlyAspLeuAsnAspLysPheGlnGluIleLeuPheIleLeuValVa : 277 |||||| !!.! :!!|||!!::!!|||:!! ! :!!|||! !! ! !!!. ArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAl 3155806 : AGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGC : 3155860 278 : lSerSerLeuProAsnIleCysIleAsnValTyrSerLeuSerSerTyrLysGlyA : 296 ! !||| !! ! ||||||.!!|||:!!||| !|||!!!.!! ..!! ! aValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGly---SerAspV 3155861 : GGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGA---TCAGATG : 3155914 297 : snIleAsnValGlnTyrIleAlaThrIlePheSerThrThrSerAlaLeuLeuGln : 314 ! :!!::!|||:!:! !! !|||.!.! !!:!!:!!!! !||| !||| alThrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGln 3155915 : TGACGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAA : 3155968 315 : PhePheIleAlaCysTrpTyrGlyAsnGluThrThrPheAsp >>>> Target : 329 .!.|||||| !||||||||||||||||||..!! !.!. ! 73 IlePheIleTyrCysTrpTyrGlyAsnGluValLysLeuLys++ 3155969 : ATATTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAGgt............ : 3156015 330 : Intron 1 >>>> SerLeuGlnValIleAsnAlaValTyrGluMetAspTrpTh : 342 bp ||||||:!!:!! !||| !:!!!:!.!.:!:|||||||| ++SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpTh 3156016 : .............agAGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGAC : 3156125 343 : rAsnPheHisValSerThrLysArgLeuLeuIlePheIleMetLeuArgAlaSerL : 361 | ||| !! !:!!||||||||| !:!!:!! !!!:|||:!!|||||||||. rProPheAspLysAlaThrLysArgAsnIleLeuThrMetMetMetArgAlaSerS 3156126 : ACCGTTCGATAAAGCTACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGT : 3156182 362 : ysProLeuLysPheSerValAlaTyrIleIleProMetAsnLeuAspSerPheIle : 379 .!|||:!!:!!.!!! ! !!.! !:!::!! !!:!!|||||||||||||||:!! erProIleGluIleIleSerValArgValLeuSerValAsnLeuAspSerPheVal 3156183 : CGCCAATTGAAATCATCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTC : 3156236 380 : LysIleIleLysAlaSerTyrThrAlaPheAsnLeu : 391 :!!! !! ...||| |||::: AlaValSerIleAspLysTyrGlnLysThrAsnIle 3156237 : GCTGTCAGTATtgataaatatcaaaaaactaatatt : 3156274 vulgar: NvOr102 258 391 . KQ414646.1 3155805 3156274 + 204 M 34 102 G 1 0 M 35 105 5 0 2 I 0 69 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155806 3156274 204 + . gene_id 1 ; sequence NvOr102 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3155806 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155806 3156012 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3156013 3156014 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156013 3156085 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3156084 3156085 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156086 3156274 . + . KQ414646.1 exonerate:protein2genome:local exon 3156086 3156274 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155806 3156274 204 + . alignment_id 1 ; Query NvOr102 ; Align 3155806 259 102 ; Align 3155908 294 105 ; Align 3156086 329 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr102 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 327 -> 385 Target range: 3178743 -> 3178917 328 : AspSerLeuGlnValIleAsnAlaValTyrGluMetAspTrpThrAsnPheHisVa : 346 .!.||| !:!!||| !.!.|||:!!|||||||||||||||||| .!!! !.. GlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuProTh 3178744 : CAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCCCAC : 3178798 347 : lSerThrLysArgLeuLeuIlePheIleMetLeuArgAlaSerLysProLeuLysP : 365 !..!! !!:!!:! !|||:!:.!.|||||| !|||:!!!.!::!|||:!!|||. rAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValLysM 3178799 : CGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTAAAA : 3178855 366 : heSerValAlaTyrIleIleProMetAsnLeuAspSerPheIleLysIleIleLys : 383 !.!!! !!.!:!!:!!:!! !:!:::! !!!:||||||!!:...:!!! !!:! etThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerValSerArg 3178856 : TGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTTAGTAGA : 3178909 384 : AlaSer : 385 !||| IleSer 3178910 : ATTTCC : 3178917 vulgar: NvOr102 327 385 . KQ414646.1 3178743 3178917 + 104 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178744 3178917 104 + . gene_id 2 ; sequence NvOr102 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178744 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178744 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178744 3178917 104 + . alignment_id 2 ; Query NvOr102 ; Align 3178744 328 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr102 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 263 -> 324 Target range: 3180475 -> 3180655 264 : LeuAsnAspLysPheGlnGluIleLeuPheIleLeuValValSerSerLeuProAs : 282 :!!||||||!...!.||| !! :!!||| !! ! !! !!.!!|||!!! ! MetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePheGlySerPheMetVa 3180476 : ATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTTCGGAAGCTTTATGGT : 3180530 283 : nIleCysIleAsnValTyrSerLeuSerSerTyrLysGlyAsnIleAsnValGlnT : 301 ||||||:!:!:!:!! !..!|||! !!:! !! !! !:!!!:!..!:!!! lIleCysLeuSerLeuIleGlnLeuLeuAsn---AlaAspIleLeuSerThrGluP 3180531 : GATCTGCCTGAGCCTGATTCAGTTGTTAAAC---GCAGATATTCTCAGCACCGAAT : 3180584 302 : yrIleAlaThrIlePheSerThrThrSerAlaLeuLeuGlnPhePheIleAlaCys : 319 :!:!!|||||||||||| :::||| !||||||||| !|||:!! !||| heLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPheLeuTyrCys 3180585 : TCTTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGCTTTCTTTACTGT : 3180638 320 : TrpTyrGlyAsnGlu : 324 ||||||||||||||| TrpTyrGlyAsnGlu 3180639 : TGGTACGGAAACGAA : 3180655 vulgar: NvOr102 263 324 . KQ414646.1 3180475 3180655 + 104 M 29 87 G 1 0 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180476 3180655 104 + . gene_id 3 ; sequence NvOr102 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180476 3180655 . + . KQ414646.1 exonerate:protein2genome:local exon 3180476 3180655 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3180476 3180655 104 + . alignment_id 3 ; Query NvOr102 ; Align 3180476 264 87 ; Align 3180563 294 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr106 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 259 -> 335 Target range: 3158449 -> 3158674 260 : CysGluGlyIleLysGluLeuAsnAspThrPheTyrGluThrIlePheIleGlnPh : 278 |||..! ! |||:!!:!!|||!!: !||| ! !! !:!:.!! !||||| CysArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPh 3158450 : TGCAGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATT : 3158504 279 : eValThrSerIleSerValLeuCysThrAsnIleTyrLeuLeuSerMetGlnAspL : 297 | !! !|||!!:||||||:!!||| !|||:!!|||! !:!!!!! ||| ! eCysIleSerMetSerValIleCysPheAsnLeuTyrArgMetThr---GlnIleL 3158505 : CTGCATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACA---CAGATCA : 3158558 298 : euPheSerAlaGluPheIleAlaValPheValTyrLeuCysCysAlaPheValGln : 315 !.!.......:::|||::: :::.!.:!!|||! !! !|||.!!.!!..!||| ysMetAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGln 3158559 : AAATGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAG : 3158612 316 : AsnPhePheTyrCysTrpTyrGlyTyrLysValSerValAsnThrLeuHisIleSe : 334 ! |||!:!||||||||||||||| !!:!!|||!.!! !!!...! !||| ! IlePheTyrTyrCysTrpTyrGlyAsnGluValLysAspLysValAspHisCysHi 3158613 : ATATTTTACTATTGTTGGTACGGCAACGAAGTGAAAGATAAGGTTGATCATTGTca : 3158669 335 : rAsp : 335 ||| sAsp 3158670 : cgat : 3158674 vulgar: NvOr106 259 335 . KQ414646.1 3158449 3158674 + 131 M 34 102 G 1 0 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158450 3158674 131 + . gene_id 1 ; sequence NvOr106 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158450 3158674 . + . KQ414646.1 exonerate:protein2genome:local exon 3158450 3158674 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3158450 3158674 131 + . alignment_id 1 ; Query NvOr106 ; Align 3158450 260 102 ; Align 3158552 295 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr106 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 259 -> 335 Target range: 3164977 -> 3165202 260 : CysGluGlyIleLysGluLeuAsnAspThrPheTyrGluThrIlePheIleGlnPh : 278 |||..! ! |||:!!:!!|||!!: !||| ! !! !:!:.!! !||||| CysArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPh 3164978 : TGCAGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATT : 3165032 279 : eValThrSerIleSerValLeuCysThrAsnIleTyrLeuLeuSerMetGlnAspL : 297 | !! !|||!!:||||||:!!||| !|||:!!|||! !:!!!!! ||| ! eCysIleSerMetSerValIleCysPheAsnLeuTyrArgMetThr---GlnIleL 3165033 : CTGCATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACA---CAGATCA : 3165086 298 : euPheSerAlaGluPheIleAlaValPheValTyrLeuCysCysAlaPheValGln : 315 !.!.......:::|||::: :::.!.:!!|||! !! !|||.!!.!!..!||| ysMetAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGln 3165087 : AAATGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAG : 3165140 316 : AsnPhePheTyrCysTrpTyrGlyTyrLysValSerValAsnThrLeuHisIleSe : 334 ! |||!:!||||||||||||||| !!:!!|||!.! !!!...! !||| ! IlePheTyrTyrCysTrpTyrGlyAsnGluValLysHisLysValAspHisCysHi 3165141 : ATATTTTACTATTGCTGGTACGGCAACGAAGTGAAACATAAGGTTGATCATTGTca : 3165197 335 : rAsp : 335 ||| sAsp 3165198 : cgat : 3165202 vulgar: NvOr106 259 335 . KQ414646.1 3164977 3165202 + 131 M 34 102 G 1 0 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164978 3165202 131 + . gene_id 2 ; sequence NvOr106 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164978 3165202 . + . KQ414646.1 exonerate:protein2genome:local exon 3164978 3165202 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3164978 3165202 131 + . alignment_id 2 ; Query NvOr106 ; Align 3164978 260 102 ; Align 3165080 295 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr106 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 265 -> 331 Target range: 3150616 -> 3150814 266 : LeuAsnAspThrPheTyrGluThrIlePheIleGlnPheValThrSerIleSerVa : 284 :!!.!.!!:! !||| !! !||| !:!:|||.!!:!!:!!|||! !|| MetGlnGluLysPheArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuVa 3150617 : ATGCAAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGGT : 3150671 285 : lLeuCysThrAsnIleTyrLeuLeuSerMetGlnAspLeuPheSerAlaGluPheI : 303 |:!!||| !! !:!:||| !|||:!!! ! !! !.!!|||:!!:!!!:!: lValCysPheIleLeuTyrGluLeuAlaAsnThrProProIleSerSerLysTyrL 3150672 : AGTGTGTTTCATCCTGTACGAATTGGCGAACACGCCTCCAATCAGCTCCAAGTACC : 3150728 304 : leAlaValPheValTyrLeuCysCysAlaPheValGlnAsnPhePheTyrCysTrp : 321 !: ! !! !!:!!||||||..!||| !.!...!|||! !||||||||||||||| euGlnPheValLeuTyrLeuAlaCysMetMetThrGlnIlePhePheTyrCysTrp 3150729 : TGCAATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATCTTCTTTTACTGCTGG : 3150782 322 : TyrGlyTyrLysValSerValAsnThrLeu : 331 |||||| ! :!!:!!!.!:!!!!...!||| TyrGlyGluGlnLeuLysLeuLysValLeu 3150783 : TACGGCGAGCAGTTGAAACTGAAGGTACTG : 3150814 vulgar: NvOr106 265 331 . KQ414646.1 3150616 3150814 + 115 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150617 3150814 115 + . gene_id 3 ; sequence NvOr106 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150617 3150814 . + . KQ414646.1 exonerate:protein2genome:local exon 3150617 3150814 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150617 3150814 115 + . alignment_id 3 ; Query NvOr106 ; Align 3150617 266 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr94 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 281 Query range: 247 -> 376 Target range: 3178375 -> 3178917 248 : LeuIlePheArgPheThrGluIleIleAsnSerIlePheAlaProValIleLeuVa : 266 ...||| |||||||||:!!! :!:|||!!!:!:||| ! !:!!|||!!!:! PheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLe 3178376 : ttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCT : 3178430 267 : lGlnPheCysLeuSerSerGlyValLeuCysIleThrValTyrGlnMetSerAlaS : 285 !||||||! !:!!|||||| !|||||||||:!:!:!:!!|||:!!||||||.!!! uGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrI 3178431 : GCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGA : 3178487 286 : erLysSerAsnGlyLeuLysValIleValLeuSerLeuTyrLeuValSerMetLeu : 303 !!!. !! !.!!:!!!!. !!:!! !! !:!!! !|||||| !!!!|||||| leAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeu 3178488 : TTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTC : 3178541 304 : ValGluPhePheLeuTyrCysTrpPheGlyAsnGluValThrLeuLys >>>> T : 320 ..!:!! ! !:!|||||||||||||||||||||||||||||||||||| ThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys++ 3178542 : ACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAGgt...... : 3178594 321 : arget Intron 1 >>>> SerLeuGlyPheAsnIleAlaValCysGluMetAs : 331 155 bp ||| ! ! ! ..! !|||:!!! !|||||||| ++SerGluLysValGlyGluAlaIleTyrGluMetAs 3178595 : ...................agAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGA : 3178780 332 : pTrpThrAlaMetHisValGlnThrLeuLysGluLeuLeuIleIleMetValArgS : 350 ||||||||||:!:! !..!.!.! ! !|||!!:||||||:!:||||||!.!|||| pTrpThrAlaLeuProThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgS 3178781 : CTGGACGGCACTTCCCACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGAT : 3178837 351 : erThrSerProIlePheLeuSerCysGlyProLeuIleLysLeuSerLeuGluSer : 368 ||! ! !!|||:!! :!!!!! !!|||! !:!!:!! |||||| !|||||| erLysArgProValLysMetThrSerGlyHisValValValLeuSerAlaGluSer 3178838 : CAAAACGACCTGTTAAAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCA : 3178891 369 : PheThrAsnIleLeuLysIleSer : 376 |||! !::!:!! !!:!|||||| PheMetSerValSerArgIleSer 3178892 : TTTATGTCTGTTAGTAGAATTTCC : 3178917 vulgar: NvOr94 247 376 . KQ414646.1 3178375 3178917 + 281 M 72 216 5 0 2 I 0 151 3 0 2 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178376 3178917 281 + . gene_id 1 ; sequence NvOr94 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3178376 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178376 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178592 3178593 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3178592 3178746 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3178745 3178746 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3178747 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178747 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178376 3178917 281 + . alignment_id 1 ; Query NvOr94 ; Align 3178376 248 216 ; Align 3178747 320 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr94 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 250 -> 319 Target range: 3155805 -> 3156012 251 : ArgPheThrGluIleIleAsnSerIlePheAlaProValIleLeuValGlnPheCy : 269 |||||||||! !!:||||||..! !|||! ! !!.!|||!!!..!||||||.. ArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAl 3155806 : AGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGC : 3155860 270 : sLeuSerSerGlyValLeuCysIleThrValTyrGlnMetSerAlaSerLysSerA : 288 .:!!|||!!! !!.!:!!|||.!!!.!:!!|||! !:!:!!!!.!||| ! !! aValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValT 3155861 : GGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGA : 3155917 289 : snGlyLeuLysValIleValLeuSerLeuTyrLeuValSerMetLeuValGluPhe : 306 .. !:!!!:! !:!:! !:!!! !:!!||| ! !!!!||||||..!:!!.!. hrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIle 3155918 : CGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATA : 3155971 307 : PheLeuTyrCysTrpPheGlyAsnGluValThrLeuLys : 319 |||:!!|||||||||!:!||||||||||||! !|||||| PheIleTyrCysTrpTyrGlyAsnGluValLysLeuLys 3155972 : TTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAG : 3156012 vulgar: NvOr94 250 319 . KQ414646.1 3155805 3156012 + 148 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155806 3156012 148 + . gene_id 2 ; sequence NvOr94 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155806 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155806 3156012 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155806 3156012 148 + . alignment_id 2 ; Query NvOr94 ; Align 3155806 251 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr94 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 251 -> 385 Target range: 3153456 -> 3154092 252 : PheThrGluIleIleAsnSerIlePheAlaProValIleLeuValGlnPheCysLe : 270 !!..!!:!!|||:!:|||..!! .!!!.! !||| !:!!||||||...:! LeuAlaGlnIleValAsnGluLysLeuGlyAsnValSerSerIleGlnPheAlaIl 3153457 : TTGGCGCAAATAGTGAACGAGAAGCTTGGAAATGTCTCGAGTATACAGTTCGCGAT : 3153511 271 : uSerSerGlyValLeuCysIleThrValTyrGlnMetSerAlaSerLysSerAsnG : 289 !|||!!!|||!.!:!!|||.!!!.!:!!|||!:!||||||!.!! !:!! ! | eSerThrGlyAlaIleCysPheAsnLeuTyrArgMetSerValIleGluLeu---G 3153512 : AAGCACAGGAGCGATATGCTTCAATCTCTATCGAATGTCGGTGATAGAACTC---G : 3153565 290 : lyLeuLysValIleValLeuSerLeuTyrLeuValSerMetLeuValGluPhePhe : 307 ||! !||| !!:!:! ! !! ! ! ! !|||!!!:!:|||!.!:!!.!.||| lyProLysPheValGluAlaLeuThrIleThrValCysLeuLeuAlaGlnIlePhe 3153566 : GTCCAAAGTTTGTGGAAGCGTTAACTATCACAGTATGCTTACTCGCGCAGATATTT : 3153619 308 : LeuTyrCysTrpPheGlyAsn----GluValThrLeuLys >>>> Target In : 320 ! !|||||||||!::||||||####|||:::|||:!!:!! 49 b TyrTyrCysTrpTyrGlyAsn####GluIleThrIleGlu-+ 3153620 : TACTATTGTTGGTAcggtaacgatagaaattacgATAGAAat.............. : 3153664 321 : tron 1 >>>> SerLeuGlyPheAsnIleAlaValCysGluMetAspTrpThrA : 334 p ||||||! !.!! ! !||| .!.! :!! |||! ++SerLeuGluIleValAspArgValThrAsnSerAsnIleThrV 3153665 : ...........agAGTCTCGAAATTGTGGACAGAGTAACGAACAGTAATATAACCG : 3153753 335 : laMetHisValGlnThrLeuLysGluLeuLeuIleIleMetValArgSerThrSer : 352 .! ! !!! !...:!! !||| |||:!!:!:!!:!!: !|||:!! !..! alSerAspGluSerSerLysLysIleLeuValLeuMetIleArgArgAlaLeuGlu 3153754 : TGTCGGACGAAAGCTCCAAGAAGATTCTGGTATTGATGATACGACGAGCTTTGGAG : 3153807 353 : ProIlePheLeuSerCysGlyProLeuIleLysLeuSerLeuGluSerPheThrAs : 371 |||:!! !!!!!! !! !! !:!!!!:...:!!!:!|||||||||||||||:: ProValGluPheThrGlyLeuArgIleMetSerValAsnLeuGluSerPheThrSe 3153808 : CCTGTCGAGTTCACCGGCCTTCGTATCATGTCTGTTAATCTCGAGTCATTCACGTC : 3153864 372 : n >>>> Target Intron 2 >>>> IleLeuLysIleSerTyrSerAlaPh : 380 : 184 bp :!:|||||| !||||||:!!||||| r++ ++LeuLeuLysSerSerTyrAlaAlaPh 3153865 : Ggt.........................agCTGTTGAAATCCTCCTACGCGGCTTT : 3154075 381 : eAsnValLeuLysGln : 385 ||||:!!|||:::::: eAsnMetLeuGlnGlu 3154076 : CAATATGCTCCaggaa : 3154092 vulgar: NvOr94 251 385 . KQ414646.1 3153456 3154092 + 146 M 36 108 G 1 0 M 26 78 F 0 4 M 5 15 5 0 2 I 0 45 3 0 2 M 52 156 5 0 2 I 0 180 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153457 3154092 146 + . gene_id 3 ; sequence NvOr94 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3153457 3153661 . + . KQ414646.1 exonerate:protein2genome:local exon 3153457 3153661 . + . insertions 0 ; deletions 1 ; frameshifts 4 KQ414646.1 exonerate:protein2genome:local splice5 3153662 3153663 . + . intron_id 1 ; splice_site "AT" KQ414646.1 exonerate:protein2genome:local intron 3153662 3153710 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3153709 3153710 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3153711 3153866 . + . KQ414646.1 exonerate:protein2genome:local exon 3153711 3153866 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3153867 3153868 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3153867 3154050 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3154049 3154050 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3154051 3154092 . + . KQ414646.1 exonerate:protein2genome:local exon 3154051 3154092 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153457 3154092 146 + . alignment_id 3 ; Query NvOr94 ; Align 3153457 252 108 ; Align 3153565 289 78 ; Align 3153647 315 15 ; Align 3153711 320 156 ; Align 3154051 372 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr94 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 250 -> 319 Target range: 3164980 -> 3165184 251 : ArgPheThrGluIleIleAsnSerIlePheAlaProValIleLeuValGlnPheCy : 269 ||||||:!!:!!! :!:|||..! !||| !! !:!!:!::!! !|||||||| ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3164981 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3165035 270 : sLeuSerSerGlyValLeuCysIleThrValTyrGlnMetSerAlaSerLysSerA : 288 |:!!|||! !..!|||:!!|||.!!!.!:!!|||!:!|||!!! !! !|||! !: sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetA 3165036 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGG : 3165092 289 : snGlyLeuLysValIleValLeuSerLeuTyrLeuValSerMetLeuValGluPhe : 306 !: ||| ::: ::: !||||||! ! !!!!!! :!!..!:!!.!. sp---ThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 3165093 : Ac---acgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 3165143 307 : PheLeuTyrCysTrpPheGlyAsnGluValThrLeuLys : 319 |||! !|||||||||!:!||||||||||||! !! !||| PheTyrTyrCysTrpTyrGlyAsnGluValLysHisLys 3165144 : TTTTACTATTGCTGGTACGGCAACGAAGTGAAACATAAG : 3165184 vulgar: NvOr94 250 319 . KQ414646.1 3164980 3165184 + 133 M 38 114 G 1 0 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164981 3165184 133 + . gene_id 4 ; sequence NvOr94 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164981 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164981 3165184 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3164981 3165184 133 + . alignment_id 4 ; Query NvOr94 ; Align 3164981 251 114 ; Align 3165095 290 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr94 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 250 -> 316 Target range: 3158452 -> 3158647 251 : ArgPheThrGluIleIleAsnSerIlePheAlaProValIleLeuValGlnPheCy : 269 ||||||:!!:!!! :!:|||..! !||| !! !:!!:!::!! !|||||||| ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3158453 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3158507 270 : sLeuSerSerGlyValLeuCysIleThrValTyrGlnMetSerAlaSerLysSerA : 288 |:!!|||! !..!|||:!!|||.!!!.!:!!|||!:!|||!!! !! !|||! !: sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetA 3158508 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGG : 3158564 289 : snGlyLeuLysValIleValLeuSerLeuTyrLeuValSerMetLeuValGluPhe : 306 !: ||| ::: ::: !||||||! ! !!!!!! :!!..!:!!.!. sp---ThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 3158565 : Ac---acgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 3158615 307 : PheLeuTyrCysTrpPheGlyAsnGluVal : 316 |||! !|||||||||!:!|||||||||||| PheTyrTyrCysTrpTyrGlyAsnGluVal 3158616 : TTTTACTATTGTTGGTACGGCAACGAAGTG : 3158647 vulgar: NvOr94 250 316 . KQ414646.1 3158452 3158647 + 132 M 38 114 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158453 3158647 132 + . gene_id 5 ; sequence NvOr94 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158453 3158647 . + . KQ414646.1 exonerate:protein2genome:local exon 3158453 3158647 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3158453 3158647 132 + . alignment_id 5 ; Query NvOr94 ; Align 3158453 251 114 ; Align 3158567 290 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr94 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 249 -> 319 Target range: 3160720 -> 3160927 250 : PheArgPheThrGluIleIleAsnSerIlePheAlaProValIleLeuValGlnPh : 268 |||||||||.!!||||||||||||:!!! |||::! !..!!!: !..!||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3160721 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3160775 269 : eCysLeuSerSerGlyValLeuCysIleThrValTyrGlnMetSerAlaSerLysS : 287 | :!!!!!!!! !..!:!!|||.!!!.!:!!!:!!:!:!!!!! !!!!||| eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3160776 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3160832 288 : erAsnGlyLeuLysValIleValLeuSerLeuTyrLeuValSerMetLeuValGlu : 305 ! !!..! :!!|||:!!!.!|||! !! !!:!:!!||||||:!!!!!!.!:!! alTyrSer---GlnValLeuAlaLeuIleProPheMetValSerValPheAlaGln 3160833 : TGTATTCG---CAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAG : 3160883 306 : PhePheLeuTyrCysTrpPheGlyAsnGluValThrLeuLys : 319 .!.|||! !! !||||||!:!|||||||||..!! !:!!||| IlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys 3160884 : ATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG : 3160927 vulgar: NvOr94 249 319 . KQ414646.1 3160720 3160927 + 120 M 40 120 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160721 3160927 120 + . gene_id 6 ; sequence NvOr94 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160721 3160927 . + . KQ414646.1 exonerate:protein2genome:local exon 3160721 3160927 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3160721 3160927 120 + . alignment_id 6 ; Query NvOr94 ; Align 3160721 250 120 ; Align 3160841 291 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr94 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 249 -> 319 Target range: 3174931 -> 3175138 250 : PheArgPheThrGluIleIleAsnSerIlePheAlaProValIleLeuValGlnPh : 268 |||||||||.!!||||||||||||:!!! |||::! !..!!!: !..!||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3174932 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3174986 269 : eCysLeuSerSerGlyValLeuCysIleThrValTyrGlnMetSerAlaSerLysS : 287 | :!!!!!!!! !..!:!!|||.!!!.!:!!!:!!:!:!!!!! !!!!||| eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3174987 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3175043 288 : erAsnGlyLeuLysValIleValLeuSerLeuTyrLeuValSerMetLeuValGlu : 305 ! !!..! :!!|||:!!!.!|||! !! !!:!:!!||||||:!!!!!!.!:!! alTyrSer---GlnValLeuAlaLeuIleProPheMetValSerValPheAlaGln 3175044 : TGTATTCG---CAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAG : 3175094 306 : PhePheLeuTyrCysTrpPheGlyAsnGluValThrLeuLys : 319 .!.|||! !! !||||||!:!|||||||||..!! !:!!||| IlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys 3175095 : ATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG : 3175138 vulgar: NvOr94 249 319 . KQ414646.1 3174931 3175138 + 120 M 40 120 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174932 3175138 120 + . gene_id 7 ; sequence NvOr94 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174932 3175138 . + . KQ414646.1 exonerate:protein2genome:local exon 3174932 3175138 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3174932 3175138 120 + . alignment_id 7 ; Query NvOr94 ; Align 3174932 250 120 ; Align 3175052 291 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr94 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 251 -> 319 Target range: 3180463 -> 3180667 252 : PheThrGluIleIleAsnSerIlePheAlaProValIleLeuValGlnPheCysLe : 270 !!..!!||||||!!:|||..!! !.!. !! !..!!!:!!!!.!||||||! ! LeuAlaGluIleMetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePheGl 3180464 : TTAGCTGAAATAATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTTCGG : 3180518 271 : uSerSerGlyValLeuCysIleThrValTyrGlnMetSerAlaSerLysSerAsnG : 289 !|||! ! !|||:!!|||:!:!:!:!! !|||:!!! ! !:!! ! ! ! !. ySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleLeuS 3180519 : AAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTCTCA : 3180575 290 : lyLeuLysValIleValLeuSerLeuTyrLeuValSerMetLeuValGluPhePhe : 307 !! !:!! !!:!!!.! !! ...|||||| |||:::|||:!!:!! !||| erThrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPhe 3180576 : GCACCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGCTTT : 3180629 308 : LeuTyrCysTrpPheGlyAsnGluValThrLeuLys : 319 ||||||||||||!:!||||||||||||! ! !||| LeuTyrCysTrpTyrGlyAsnGluValArgThrLys 3180630 : CTTTACTGTTGGTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: NvOr94 251 319 . KQ414646.1 3180463 3180667 + 112 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180464 3180667 112 + . gene_id 8 ; sequence NvOr94 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180464 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180464 3180667 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180464 3180667 112 + . alignment_id 8 ; Query NvOr94 ; Align 3180464 252 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr101 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 202 Query range: 262 -> 391 Target range: 3178378 -> 3178917 263 : IleTyrArgPheGlyGluAspLeuAsnLysIlePheGlnGluMetLeuLeuIleLe : 281 ||| |||||| !:!! :!!|||! :!:|||||| ! |||:!!!!!:!:! IleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLeuGl 3178379 : atttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCTGCA : 3178433 282 : uValValSerSerLeuProAsnIleCysIleAsnIleTyrAlaLeuSerSerAsnL : 300 ! !! !! !|||! ! !! :!:|||:!:!:!|||||| !:!!|||!!! : nPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThr---I 3178434 : ATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACG---A : 3178487 301 : euLysAsnIleAsnMetAspTyrIleAlaThrPhePheSerThrThrSerAlaPhe : 318 !!!!. .!!!:!|||:!!!:!:!! ! ! !! !! ! ! !!!! !.!! leAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeu 3178488 : TTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTC : 3178541 319 : IleGlnPhePheIleAlaCysTrpPheGlyAsnGluValSerLeuAsn >>>> T : 335 ! ||| ! !:!:!! !|||||||||||||||||||||!!!|||!!. ThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys++ 3178542 : ACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAGgt...... : 3178594 336 : arget Intron 1 >>>> SerValGluValArgAsnAlaValTyrAlaMetAs : 346 155 bp |||! !:!!||| !!.!.|||:!!|||! !||||| ++SerGluLysValGlyGluAlaIleTyrGluMetAs 3178595 : ...................agAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGA : 3178780 347 : pTrpAsnLysLeuAspThrProThrGlnLysLeuLeuIleValValMetAlaArgS : 365 ||||!.. !||| !||| !! !::!||| !|||:!::!!:!!|||||||||| pTrpThrAlaLeuProThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgS 3178781 : CTGGACGGCACTTCCCACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGAT : 3178837 366 : erLeuLysProIleGluPheSerValGlyTyrIleIleProMetAsnValAspSer : 383 || !::!|||:!!:!!.!.!!! !|||:!!:!!:!! !:!:::!!.!!!:||| erLysArgProValLysMetThrSerGlyHisValValValLeuSerAlaGluSer 3178838 : CAAAACGACCTGTTAAAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCA : 3178891 384 : PheLeuLysIleIleLysAlaSer : 391 |||:!!...:!!! !!:! !||| PheMetSerValSerArgIleSer 3178892 : TTTATGTCTGTTAGTAGAATTTCC : 3178917 vulgar: NvOr101 262 391 . KQ414646.1 3178378 3178917 + 202 M 36 108 G 1 0 M 35 105 5 0 2 I 0 151 3 0 2 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178379 3178917 202 + . gene_id 1 ; sequence NvOr101 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3178379 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178379 3178591 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3178592 3178593 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3178592 3178746 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3178745 3178746 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3178747 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178747 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178379 3178917 202 + . alignment_id 1 ; Query NvOr101 ; Align 3178379 263 108 ; Align 3178487 300 105 ; Align 3178747 335 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr101 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 189 Query range: 263 -> 395 Target range: 3160720 -> 3161184 264 : TyrArgPheGlyGluAspLeuAsnLysIlePheGlnGluMetLeuLeuIleLeuVa : 282 !:!||||||!.!||| !:!!||| !! |||... ! !:!! !! ! ! ! PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3160721 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3160775 283 : lValSerSerLeuProAsnIleCysIleAsnIleTyrAlaLeuSerSerAsnLeuL : 301 !:!! !!!! ! !!..!!:|||.!!|||:!!!:! !|||!!!..!!.! eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThr---- 3160776 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACC---- : 3160829 302 : ysAsnIleAsnMetAspTyrIleAlaThrPhePheSerThrThrSerAlaPheIle : 319 !!.:!: !! !.!. !:!!||| !.!. ! !! !..!|||!.!||| ! --LysValTyrSerGlnValLeuAlaLeuIleProPheMetValSerValPheAla 3160830 : --AAGGTGTATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCA : 3160880 320 : GlnPhePheIleAlaCysTrpPheGlyAsnGluValSerLeuAsn >>>> Targ : 335 |||.!.||| !..!||||||!:!|||||||||..!!.!:!!!!. GlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys++ 3160881 : CAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGgt......... : 3160930 336 : et Intron 1 >>>> SerValGluValArgAsnAlaValTyrAlaMetAspTr : 347 74 bp |||:!!|||:!! !!:!!.!!|||!:!! !! :!!|| ++SerLeuGluIleCysAspThrValPheGluSerAsnTr 3160931 : ................agAGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTG : 3161038 348 : pAsnLysLeuAspThrProThrGlnLysLeuLeuIleValValMetAlaArgSerL : 366 |!.. !|||..! ! !|||:!!||| !|||:!:..!:!!||| !||||||| pThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgSerL 3161039 : GACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCGT : 3161095 367 : euLysProIleGluPheSerValGlyTyrIleIleProMetAsnValAspSerPhe : 384 |||||||||||||||||!!!! !!.!!:!:!!.!!|||:!:|||:!!!!:|||||| euLysProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSerPhe 3161096 : TGAAGCCAATAGAATTCACCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTT : 3161149 385 : LeuLysIleIleLysAlaSerTyrThrAlaPhe : 395 !!..:!! ! ||| ||| LysSerValCysIleLysIleTyrIlePhePhe 3161150 : AAAAGTGTTTGTatcaaaatatatatatttttc : 3161184 vulgar: NvOr101 263 395 . KQ414646.1 3160720 3161184 + 189 M 36 108 G 2 0 M 33 99 5 0 2 I 0 70 3 0 2 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160721 3161184 189 + . gene_id 2 ; sequence NvOr101 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3160721 3160927 . + . KQ414646.1 exonerate:protein2genome:local exon 3160721 3160927 . + . insertions 0 ; deletions 2 KQ414646.1 exonerate:protein2genome:local splice5 3160928 3160929 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3160928 3161001 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3161000 3161001 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3161002 3161184 . + . KQ414646.1 exonerate:protein2genome:local exon 3161002 3161184 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160721 3161184 189 + . alignment_id 2 ; Query NvOr101 ; Align 3160721 264 108 ; Align 3160829 302 99 ; Align 3161002 335 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr101 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 189 Query range: 263 -> 395 Target range: 3174931 -> 3175395 264 : TyrArgPheGlyGluAspLeuAsnLysIlePheGlnGluMetLeuLeuIleLeuVa : 282 !:!||||||!.!||| !:!!||| !! |||... ! !:!! !! ! ! ! PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3174932 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3174986 283 : lValSerSerLeuProAsnIleCysIleAsnIleTyrAlaLeuSerSerAsnLeuL : 301 !:!! !!!! ! !!..!!:|||.!!|||:!!!:! !|||!!!..!!.! eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThr---- 3174987 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACC---- : 3175040 302 : ysAsnIleAsnMetAspTyrIleAlaThrPhePheSerThrThrSerAlaPheIle : 319 !!.:!: !! !.!. !:!!||| !.!. ! !! !..!|||!.!||| ! --LysValTyrSerGlnValLeuAlaLeuIleProPheMetValSerValPheAla 3175041 : --AAGGTGTATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCA : 3175091 320 : GlnPhePheIleAlaCysTrpPheGlyAsnGluValSerLeuAsn >>>> Targ : 335 |||.!.||| !..!||||||!:!|||||||||..!!.!:!!!!. GlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys++ 3175092 : CAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGgt......... : 3175141 336 : et Intron 1 >>>> SerValGluValArgAsnAlaValTyrAlaMetAspTr : 347 74 bp |||:!!|||:!! !!:!!.!!|||!:!! !! :!!|| ++SerLeuGluIleCysAspThrValPheGluSerAsnTr 3175142 : ................agAGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTG : 3175249 348 : pAsnLysLeuAspThrProThrGlnLysLeuLeuIleValValMetAlaArgSerL : 366 |!.. !|||..! ! !|||:!!||| !|||:!:..!:!!||| !||||||| pThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgSerL 3175250 : GACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCGT : 3175306 367 : euLysProIleGluPheSerValGlyTyrIleIleProMetAsnValAspSerPhe : 384 |||||||||||||||||!!!! !!.!!:!:!!.!!|||:!:|||:!!!!:|||||| euLysProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSerPhe 3175307 : TGAAGCCAATAGAATTCACCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTT : 3175360 385 : LeuLysIleIleLysAlaSerTyrThrAlaPhe : 395 !!..:!! ! ||| ||| LysSerValCysIleLysIleTyrIlePhePhe 3175361 : AAAAGTGTTTGTatcaaaatatatatatttttc : 3175395 vulgar: NvOr101 263 395 . KQ414646.1 3174931 3175395 + 189 M 36 108 G 2 0 M 33 99 5 0 2 I 0 70 3 0 2 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174932 3175395 189 + . gene_id 3 ; sequence NvOr101 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3174932 3175138 . + . KQ414646.1 exonerate:protein2genome:local exon 3174932 3175138 . + . insertions 0 ; deletions 2 KQ414646.1 exonerate:protein2genome:local splice5 3175139 3175140 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3175139 3175212 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3175211 3175212 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3175213 3175395 . + . KQ414646.1 exonerate:protein2genome:local exon 3175213 3175395 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3174932 3175395 189 + . alignment_id 3 ; Query NvOr101 ; Align 3174932 264 108 ; Align 3175040 302 99 ; Align 3175213 335 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr101 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 169 -> 226 Target range: 3164421 -> 3164592 170 : GlyTrpTyrProTyrAspIleGluAsnSerValLeuPheGlyIleThrTyrValHi : 188 !.!|||! ||||||||| !... !:!! !:!!||| !:!!|||!:!||||| AlaTrpLeuProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHi 3164422 : GCATGGTTACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCA : 3164476 189 : sGlnValIleLeuGlySerPheValIleCysAlaHisValGlyIleAspThrLeuP : 207 ||||!.!||| !!.!!!!.!. ! ! !:!! !||| !:!:|||:!!|||! sGlnAlaIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuT 3164477 : TCAAGCTATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTAT : 3164533 208 : heValGlyLeuLeuLeuLysLeuLeuGlyGlnIleAsnIleLeuLysHisArgLeu : 225 :!..!|||||||||:!!!!.:!!! ! !!|||.!!.!.||||||:!!||||||||| yrThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeu 3164534 : ACACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTA : 3164587 226 : Gln : 226 ::! Arg 3164588 : AGG : 3164592 vulgar: NvOr101 169 226 . KQ414646.1 3164421 3164592 + 123 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164422 3164592 123 + . gene_id 4 ; sequence NvOr101 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164422 3164592 . + . KQ414646.1 exonerate:protein2genome:local exon 3164422 3164592 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164422 3164592 123 + . alignment_id 4 ; Query NvOr101 ; Align 3164422 170 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr101 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 169 -> 226 Target range: 3157893 -> 3158064 170 : GlyTrpTyrProTyrAspIleGluAsnSerValLeuPheGlyIleThrTyrValHi : 188 !.!||| ||||||||| !... !:!! !:!!||| !:!!|||! !||||| AlaTrpIleProTyrAspTyrSerProAlaProIlePheIleLeuThrSerValHi 3157894 : GCATGGATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTCCGTCCA : 3157948 189 : sGlnValIleLeuGlySerPheValIleCysAlaHisValGlyIleAspThrLeuP : 207 ||||!.!||| !..!!!!.!. ! ! !:!! !||| !:!:|||||||||! sGlnAlaIleAlaSerThrIleCysCysThrSerThrValThrValAspThrLeuT 3157949 : TCAAGCTATAGCCTCGACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTAT : 3158005 208 : heValGlyLeuLeuLeuLysLeuLeuGlyGlnIleAsnIleLeuLysHisArgLeu : 225 :!..!|||||||||:!!!!.:!!! ! !!|||.!!.!.||||||:!!||||||||| yrThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeu 3158006 : ACACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTA : 3158059 226 : Gln : 226 ::! Arg 3158060 : AGG : 3158064 vulgar: NvOr101 169 226 . KQ414646.1 3157893 3158064 + 121 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157894 3158064 121 + . gene_id 5 ; sequence NvOr101 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3157894 3158064 . + . KQ414646.1 exonerate:protein2genome:local exon 3157894 3158064 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157894 3158064 121 + . alignment_id 5 ; Query NvOr101 ; Align 3157894 170 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr101 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 164 -> 224 Target range: 3180137 -> 3180317 165 : GlnLeuProAlaAspGlyTrpTyrProTyrAspIleGluAsnSerValLeuPheGl : 183 ::!||| !! ! ||||||!:!||||||||| ! !!.!:!!||||||||| ArgLeuThrTyrArgGlyTrpPheProTyrAspTyrThrThrAlaValLeuPhePr 3180138 : AGACTAACCTACAGAGGCTGGTTCCCTTACGATTACACGACCGCCGTACTTTTTCC : 3180192 184 : yIleThrTyrValHisGlnValIleLeuGlySerPheValIleCysAlaHisValG : 202 !:!:||||||!.!! |||:!!:!!! !! ! ! ! ! !!! !||||||. oLeuThrTyrAlaLeuGlnLeuLeuCysValLeuValTyrSerTrpIleHisValS 3180193 : ATTGACATACGCTCTGCAGCTATTATGCGTGCTCGTATATTCCTGGATCCACGTTT : 3180249 203 : lyIleAspThrLeuPheValGlyLeuLeuLeuLysLeuLeuGlyGlnIleAsnIle : 220 .!:!:|||! !|||||| !!|||||||||:!!:!!|||! ! !!|||.!!:!:||| erValAspIleLeuPhePheGlyLeuLeuMetGlnLeuCysCysGlnPheAspIle 3180250 : CAGTGGATATTCTCTTCTTCGGACTGTTGATGCAACTGTGCTGTCAATTCGAcatt : 3180303 221 : LeuLysHisArg : 224 ||| ||| LeuPheSerArg 3180304 : ctcttctctcgt : 3180317 vulgar: NvOr101 164 224 . KQ414646.1 3180137 3180317 + 118 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180138 3180317 118 + . gene_id 6 ; sequence NvOr101 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180138 3180317 . + . KQ414646.1 exonerate:protein2genome:local exon 3180138 3180317 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180138 3180317 118 + . alignment_id 6 ; Query NvOr101 ; Align 3180138 165 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr101 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 134 -> 226 Target range: 3150032 -> 3150308 135 : ArgHisIleThrValThrTyrPheIleSerMetIleSerIleIleLeuMetLysAs : 153 ||| :!:|||:!! !||| ||| !:!! ! !! :!!||| ! ! ArgSerValThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCysMetIl 3150033 : AGGTCGGTGACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTGTATGAT : 3150087 154 : pLeuGlyProIleAlaGluSerGlyLeuAlaIleGlnLeuProAlaAspGlyTrpT : 172 !|||..! !!:!: !! ..! ! !! ! :!!||| !! ! !.!||| eLeuSerSerLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgAlaTrpL 3150088 : CCTCTCTTCGTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAGCCTGGC : 3150144 173 : yrProTyrAspIleGluAsnSerValLeuPheGlyIleThrTyrValHisGlnVal : 190 |||!:!||| !... !!..!! !!:! !|||.!!||||||||||||:!! euProPheAspTyrSerLeuProThrTyrTyrTyrIleAlaTyrValHisGlnIle 3150145 : TGCCCTTCGATTACTCTCTGCCAACTTACTATTACATCGCGTACGTTCATCAGATC : 3150198 191 : IleLeuGlySerPheValIleCysAlaHisValGlyIleAspThrLeuPheValGl : 209 :!! ! !! ! !..! !:!!:!!|||!.! !|||..!:!!.!! !|| ValAlaLeuIleGlyThrSerLeuSerAsnValAlaCysAspValIleIleCysGl 3150199 : GTCGCGCTGATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCATCTGCGG : 3150255 210 : yLeuLeuLeuLysLeuLeuGlyGlnIleAsnIleLeuLysHisArgLeuGln : 226 |||||||:!! ! !! !|||||| .!.|||||||||||||||:!!:!! yLeuLeuValHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMetLys 3150256 : GTTGCTCGTTCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATGAAG : 3150308 vulgar: NvOr101 134 226 . KQ414646.1 3150032 3150308 + 112 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150033 3150308 112 + . gene_id 7 ; sequence NvOr101 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150033 3150308 . + . KQ414646.1 exonerate:protein2genome:local exon 3150033 3150308 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150033 3150308 112 + . alignment_id 7 ; Query NvOr101 ; Align 3150033 135 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr101 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 164 -> 226 Target range: 3160143 -> 3160332 165 : GlnLeuProAlaAspGlyTrpTyrProTyrAspIleGluAsnSerVal<->LeuPh : 182 :!!|||||| ! ! !|||! |||!:!||| !..! !!!!:!! :!!|| GluLeuProLeuArgValTrpLeuProPheAspTyrArgAlaThrLeuGlyIlePh 3160144 : GAGTTACCCCTTCGAGTATGGTTACCTTTCGATTATAGAGCCACATTGGGTATTTT : 3160198 183 : eGlyIleThrTyrValHisGlnValIleLeuGlySerPheValIleCysAlaHisV : 201 |.!!:!!||||||!.!:!!||| !!:!! ! !! !|||:!!! ! !||| !: eSerLeuThrTyrAlaTyrGlnPheValThrLeuIlePheIleThrThrAlaIleM 3160199 : CAGCCTTACCTACGCTTATCAGTTTGTAACTCTGATATTCATTACTACCGCGATTA : 3160255 202 : alGlyIleAspThrLeuPheValGlyLeuLeuLeuLysLeuLeuGlyGlnIleAsn : 219 !!|||! !|||!.!|||||| !|||||||||:!! ! :!!! ! !!|||.!!.!. etGlyThrAspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGlu 3160256 : TGGGTACTGACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAG : 3160309 220 : IleLeuLysHisArgLeuGln : 226 ||||||:!!|||||||||:!! IleLeuGlnHisArgLeuLys 3160310 : ATACTCCAACATCGTCTGAAG : 3160332 vulgar: NvOr101 164 226 . KQ414646.1 3160143 3160332 + 111 M 16 48 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160144 3160332 111 + . gene_id 8 ; sequence NvOr101 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160144 3160332 . + . KQ414646.1 exonerate:protein2genome:local exon 3160144 3160332 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160144 3160332 111 + . alignment_id 8 ; Query NvOr101 ; Align 3160144 165 48 ; Align 3160195 181 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr98 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 257 -> 323 Target range: 3180460 -> 3180658 258 : GluPheAlaLysIleLeuAsnAspSerLeuAsnValMetLeuPheGlyGlnIleAl : 276 ...!!.|||:!!|||:!!||||||||||||.!.:!!! !:!!|||!.!|||.!! SerLeuAlaGluIleMetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePh 3180461 : AGTTTAGCTGAAATAATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTT : 3180515 277 : aValThrIleProAsnLeuCysLeuSerIleTyrLeuLeuSerThrGlnLysIleA : 295 !! !!:!.!! ! :!!|||||||||:!: !! !|||! !!.! ! ! ||| eGlySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleL 3180516 : CGGAAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTC : 3180572 296 : laSerMetAspPheMetMetThrThrGlnPhePheSerAlaValValIleGluLeu : 313 !|||! !!:|||:!: !|||! :::...|||:::::!:!!:!::!! ! euSerThrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSer 3180573 : TCAGCACCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGC : 3180626 314 : PhePhePheCysTrpTyrGlyAsnGluVal : 323 |||.!!!:!||||||||||||||||||||| PheLeuTyrCysTrpTyrGlyAsnGluVal 3180627 : TTTCTTTACTGTTGGTACGGAAACGAAGTG : 3180658 vulgar: NvOr98 257 323 . KQ414646.1 3180460 3180658 + 140 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180461 3180658 140 + . gene_id 1 ; sequence NvOr98 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180461 3180658 . + . KQ414646.1 exonerate:protein2genome:local exon 3180461 3180658 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180461 3180658 140 + . alignment_id 1 ; Query NvOr98 ; Align 3180461 258 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr98 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 255 -> 325 Target range: 3178378 -> 3178588 256 : IlePheGluPheAlaLysIleLeuAsnAspSerLeuAsnValMetLeuPheGlyGl : 274 ||| ...|||.!!:!!! :!!||| ! !!!!.!. !|||:!!||| !|| IleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLeuGl 3178379 : atttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCTGCA : 3178433 275 : nIleAlaValThrIleProAsnLeuCysLeuSerIleTyrLeuLeuSerThrGlnL : 293 |.!!:!!:!!!:! !! |||||||||||||||||| !:!!|||||| ! nPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrIleA 3178434 : ATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGATTA : 3178490 294 : ysIleAlaSerMetAspPheMetMetThrThrGlnPhePheSerAlaValValIle : 311 !. ! !||||||:!!|||:!: ! !.!!...!:!!!.!!!..!:!!:!!! snProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeuThr 3178491 : ATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACG : 3178544 312 : GluLeuPhePhePheCysTrpTyrGlyAsnGluValThrLeu : 325 :!!:!!!:!!!.!:!||||||!:!|||||||||||||||||| GlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeu 3178545 : CAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTG : 3178588 vulgar: NvOr98 255 325 . KQ414646.1 3178378 3178588 + 137 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178379 3178588 137 + . gene_id 2 ; sequence NvOr98 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178379 3178588 . + . KQ414646.1 exonerate:protein2genome:local exon 3178379 3178588 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178379 3178588 137 + . alignment_id 2 ; Query NvOr98 ; Align 3178379 256 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr98 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 257 -> 325 Target range: 3155805 -> 3156009 258 : GluPheAlaLysIleLeuAsnAspSerLeuAsnValMetLeuPheGlyGlnIleAl : 276 ..!|||.!! !!::!!|||!!:..!!!!.!.:!! !:!!||| !|||.!!|| ArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAl 3155806 : AGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGC : 3155860 277 : aValThrIleProAsnLeuCysLeuSerIleTyrLeuLeuSerThrGlnLysIleA : 295 ||||!:!! ! ! :!!|||!!!!:!:!!|||||||||!!! !..! ! :!:. aValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValT 3155861 : GGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGA : 3155917 296 : laSerMetAspPheMetMetThrThrGlnPhePheSerAlaValValIleGluLeu : 313 !! !!!!: !:!:!! ! !! !..!!:! !|||..!:!!:!!! :!!:!! hrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIle 3155918 : CGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATA : 3155971 314 : PhePhePheCysTrpTyrGlyAsnGluValThrLeu : 325 |||.!!!:!|||||||||||||||||||||! !||| PheIleTyrCysTrpTyrGlyAsnGluValLysLeu 3155972 : TTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTG : 3156009 vulgar: NvOr98 257 325 . KQ414646.1 3155805 3156009 + 128 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155806 3156009 128 + . gene_id 3 ; sequence NvOr98 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155806 3156009 . + . KQ414646.1 exonerate:protein2genome:local exon 3155806 3156009 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155806 3156009 128 + . alignment_id 3 ; Query NvOr98 ; Align 3155806 258 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr98 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 256 -> 329 Target range: 3160720 -> 3160936 257 : PheGluPheAlaLysIleLeuAsnAspSerLeuAsnValMetLeuPheGlyGlnIl : 275 |||..!||||||:!!|||:!!|||! !.!!!!!:!:!!! !:!! ! !|||.! PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3160721 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3160775 276 : eAlaValThrIleProAsnLeuCysLeuSerIleTyrLeuLeuSerThrGlnLysI : 294 ! !||||||! ! !!..:!!|||!!!!:!:!!!:!! !|||!!! ! |||: eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3160776 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3160832 295 : leAlaSerMetAspPheMetMetThrThrGlnPhePheSerAlaValValIleGlu : 312 !: !||| .!. !!:!: !! !! !|||.!. !::!||| !! !:!! alTyrSer---GlnValLeuAlaLeuIleProPheMetValSerValPheAlaGln 3160833 : TGTATTCG---CAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAG : 3160883 313 : LeuPhePhePheCysTrpTyrGlyAsnGluValThrLeuAsnSerLeuAsp : 329 :!!|||!:!! !||||||||||||||||||..!! !:!!!!. !! !||| IlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLysValArgAsp 3160884 : ATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGGTACGTGAT : 3160936 vulgar: NvOr98 256 329 . KQ414646.1 3160720 3160936 + 109 M 40 120 G 1 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160721 3160936 109 + . gene_id 4 ; sequence NvOr98 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160721 3160936 . + . KQ414646.1 exonerate:protein2genome:local exon 3160721 3160936 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3160721 3160936 109 + . alignment_id 4 ; Query NvOr98 ; Align 3160721 257 120 ; Align 3160841 298 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr98 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 256 -> 329 Target range: 3174931 -> 3175147 257 : PheGluPheAlaLysIleLeuAsnAspSerLeuAsnValMetLeuPheGlyGlnIl : 275 |||..!||||||:!!|||:!!|||! !.!!!!!:!:!!! !:!! ! !|||.! PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3174932 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3174986 276 : eAlaValThrIleProAsnLeuCysLeuSerIleTyrLeuLeuSerThrGlnLysI : 294 ! !||||||! ! !!..:!!|||!!!!:!:!!!:!! !|||!!! ! |||: eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3174987 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3175043 295 : leAlaSerMetAspPheMetMetThrThrGlnPhePheSerAlaValValIleGlu : 312 !: !||| .!. !!:!: !! !! !|||.!. !::!||| !! !:!! alTyrSer---GlnValLeuAlaLeuIleProPheMetValSerValPheAlaGln 3175044 : TGTATTCG---CAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAG : 3175094 313 : LeuPhePhePheCysTrpTyrGlyAsnGluValThrLeuAsnSerLeuAsp : 329 :!!|||!:!! !||||||||||||||||||..!! !:!!!!. !! !||| IlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLysValArgAsp 3175095 : ATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGGTACGTGAT : 3175147 vulgar: NvOr98 256 329 . KQ414646.1 3174931 3175147 + 109 M 40 120 G 1 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174932 3175147 109 + . gene_id 5 ; sequence NvOr98 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174932 3175147 . + . KQ414646.1 exonerate:protein2genome:local exon 3174932 3175147 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3174932 3175147 109 + . alignment_id 5 ; Query NvOr98 ; Align 3174932 257 120 ; Align 3175052 298 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr98 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 22 -> 144 Target range: 3154969 -> 3155332 23 : TrpTrpArgProLeuAsnMetSerThrTrpArgArgAlaValTyrSerCysPheTh : 41 ||| ! !|||! !::: !! !!::!:!||| !!.!|||||| |||:! TrpProProProSerSerAlaProLeuPheLysArgPheAlaTyrSerValPheSe 3154970 : TGGCCACCGCCATCATCAGCTCCGCTGTTTAAAAGATTCGCCTACTCTGTATTCTC : 3155024 42 : rValIleMetLeuThrLeuLeuValThrIleThrLeuThrValLeuIleGlyValT : 60 ! ! !! !|||! !|||:!! !! !! ..!!!!!:! !:!!!!:! !:!!! rTrpTyrThrLeuIleLeuValTyrIleThrValPheSerGlnIleMetAspLeuI 3155025 : GTGGTACACGTTAATACTGGTGTACATCACGGTTTTCAGCCAAATCATGGACCTAA : 3155081 61 : hrGlnMetSerAlaThrAspAspLeuPheAlaAspAsnValPheLeuMetPheAla : 78 ! !! !.!!|||.!.||| !|||::!|||||| !!!:!:!!:!:.!.||| leValAsnValThrThrGlnAspGluPheSerAspAsnPheTyrIleLeuLeuAla 3155082 : TCGTGAACGTGACGACTCAAGACGAGTTTAGCGACAATTTTTACATACTTCTGGCG : 3155135 79 : LeuIleAsnSerValPheLysAlaThrAsnValLeuLeuSerArgArgArgPheIl : 97 ! ! ! |||:!! |||||| !!:!|||||| !||||||!:!!.! !! CysAlaIleSerLeuGlnLysAlaGlnSerValLeuAsnSerArgLysAsnValHi 3155136 : TGTGCGATATCCTTGCAGAAAGCACAGAGTGTGTTAAACAGTCGTAAGAATGTCCA : 3155192 98 : eLysMetLeuGluIleValGlnAspThrArgTrpArgAspLeuArgAsnAspGluG : 116 !:::|||:!!!!::!!:!!.!...! !! !!::!.! ..! ! ! |||| sArgMetIleAspLeuLeuAsnSerGluProPheHisPro---GluCysLysGluG 3155193 : CCGTATGATCGATCTTTTGAACAGCGAACCTTTTCATCCA---GAATGTAAGGAGG : 3155246 117 : luIleGluIleGlnAspArgTyrArgLysThrIleArgLysIleSerValTyrPhe : 134 |||||||||||::!..!||| ! !:!! ! !||| ::: :::::: luIleGluIleArgSerArgIleSerGluHisAlaArg***ValLeuHisPheTyr 3155247 : AAATCGAGATAAGAAGTAGGATCTCCGAGCACGCCAGGTaagttcttcatttttat : 3155300 135 : ThrThrAlaValPheValAlaIleIleLeu : 144 ||| ! !:!! :::...||| ThrGlyLeuIleSerProPheValPheLeu 3155301 : acagGCTTAATCtctccttttgttttttta : 3155332 vulgar: NvOr98 22 144 . KQ414646.1 3154969 3155332 + 106 M 88 264 G 1 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3154970 3155332 106 + . gene_id 6 ; sequence NvOr98 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3154970 3155332 . + . KQ414646.1 exonerate:protein2genome:local exon 3154970 3155332 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3154970 3155332 106 + . alignment_id 6 ; Query NvOr98 ; Align 3154970 23 264 ; Align 3155234 112 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr98 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 257 -> 323 Target range: 3158452 -> 3158647 258 : GluPheAlaLysIleLeuAsnAspSerLeuAsnValMetLeuPheGlyGlnIleAl : 276 ..!|||:!!|||! :!!|||!!:..!!!!!!.:!!!!:|||.!!..!|||.!!.. ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3158453 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3158507 277 : aValThrIleProAsnLeuCysLeuSerIleTyrLeuLeuSerThrGlnLysIleA : 295 !:!!!:!!!: !! :!!|||!!!!:!:!!|||! !:!! ||||||! ! ! sIleSerMetSerValIleCysPheAsnLeuTyrArgMet---ThrGlnIleLysM 3158508 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATG---ACACAGATCAAAA : 3158561 296 : laSerMetAspPheMetMetThrThrGlnPhePheSerAlaValValIleGluLeu : 313 !... |||::: !! !:!! !! !..!..!:!!! :!!:!! etAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 3158562 : TGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 3158615 314 : PhePhePheCysTrpTyrGlyAsnGluVal : 323 |||!:!!:!||||||||||||||||||||| PheTyrTyrCysTrpTyrGlyAsnGluVal 3158616 : TTTTACTATTGTTGGTACGGCAACGAAGTG : 3158647 vulgar: NvOr98 257 323 . KQ414646.1 3158452 3158647 + 100 M 32 96 G 1 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158453 3158647 100 + . gene_id 7 ; sequence NvOr98 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158453 3158647 . + . KQ414646.1 exonerate:protein2genome:local exon 3158453 3158647 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3158453 3158647 100 + . alignment_id 7 ; Query NvOr98 ; Align 3158453 258 96 ; Align 3158549 291 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr98 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 257 -> 323 Target range: 3164980 -> 3165175 258 : GluPheAlaLysIleLeuAsnAspSerLeuAsnValMetLeuPheGlyGlnIleAl : 276 ..!|||:!!|||! :!!|||!!:..!!!!!!.:!!!!:|||.!!..!|||.!!.. ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3164981 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3165035 277 : aValThrIleProAsnLeuCysLeuSerIleTyrLeuLeuSerThrGlnLysIleA : 295 !:!!!:!!!: !! :!!|||!!!!:!:!!|||! !:!! ||||||! ! ! sIleSerMetSerValIleCysPheAsnLeuTyrArgMet---ThrGlnIleLysM 3165036 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATG---ACACAGATCAAAA : 3165089 296 : laSerMetAspPheMetMetThrThrGlnPhePheSerAlaValValIleGluLeu : 313 !... |||::: !! !:!! !! !..!..!:!!! :!!:!! etAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 3165090 : TGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 3165143 314 : PhePhePheCysTrpTyrGlyAsnGluVal : 323 |||!:!!:!||||||||||||||||||||| PheTyrTyrCysTrpTyrGlyAsnGluVal 3165144 : TTTTACTATTGCTGGTACGGCAACGAAGTG : 3165175 vulgar: NvOr98 257 323 . KQ414646.1 3164980 3165175 + 100 M 32 96 G 1 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164981 3165175 100 + . gene_id 8 ; sequence NvOr98 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164981 3165175 . + . KQ414646.1 exonerate:protein2genome:local exon 3164981 3165175 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3164981 3165175 100 + . alignment_id 8 ; Query NvOr98 ; Align 3164981 258 96 ; Align 3165077 291 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr104PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 300 -> 379 Target range: 3175051 -> 3175362 301 : GlnTyrIleAlaThrPhePheCysThrThrSerAlaPheLeuGluPhePheIleVa : 319 ||| !:!!||| !.!. ! !! !..!|||!.!||| !:!!.!.||| ! GlnValLeuAlaLeuIleProPheMetValSerValPheAlaGlnIlePheTyrCy 3175052 : CAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTG : 3175106 320 : lCysTrpTyrGlyAsnAspValSerLeuAsn >>>> Target Intron 1 >> : 330 !|||||||||||||||!!:..!!.!:!!!!. 74 bp sCysTrpTyrGlyAsnGluThrLysValLys++ 3175107 : TTGCTGGTATGGAAACGAGACCAAAGTGAAGgt....................... : 3175141 331 : >> SerIleGlnValLysAsnAlaIleTyrGluMetAspTrpThrIleCysCysM : 347 |||:!!:!!:!! :!!.!!:!!!:!|||! :!!|||||| ! !!. ++SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerG 3175142 : ..agAGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCC : 3175264 348 : etPheGlnLeuLysLysPheIleIleIleMetAlaArgSerLeuLysProIleGln : 365 .! ! !|||! !.!!:!:! |||||| !||||||||||||||||||:!! lnSerThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGlu 3175265 : AGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAA : 3175318 366 : PheSerValGlySerValLeuProMetAsnLeuAspSerPhe : 379 |||!!!! !!.!! !|||!!!|||:!:||||||!!:|||||| PheThrGlyAlaPheValPheProValAsnLeuGluSerPhe 3175319 : TTCACCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTT : 3175362 vulgar: NvOr104PSE 300 379 . KQ414646.1 3175051 3175362 + 157 M 29 87 5 0 2 I 0 70 3 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3175052 3175362 157 + . gene_id 1 ; sequence NvOr104PSE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3175052 3175138 . + . KQ414646.1 exonerate:protein2genome:local exon 3175052 3175138 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3175139 3175140 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3175139 3175212 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3175211 3175212 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3175213 3175362 . + . KQ414646.1 exonerate:protein2genome:local exon 3175213 3175362 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3175052 3175362 157 + . alignment_id 1 ; Query NvOr104PSE ; Align 3175052 301 87 ; Align 3175213 330 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr104PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 283 -> 380 Target range: 3155877 -> 3156238 284 : IleCysIleAsnValTyrAlaLeuSerAlaTyrArgAspTyrIleAsnLeuGlnTy : 302 ||||||.!!|||:!!||| !|||!!!!.! !||| ! :!!::!|| IleCysPheAsnLeuTyrLeuLeuThrGly---SerAspValThrProIleArgTy 3155878 : ATATGCTTCAATCTTTACCTATTAACAGGA---TCAGATGTGACGCCGATTAGGTA : 3155929 303 : rIleAlaThrPhePheCysThrThrSerAlaPheLeuGluPhePheIleValCysT : 321 |:!:! !! !.!!.!.! !!:!!:!!!! !.!! !:!!.!.|||||| !|||| rValGluIleIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysT 3155930 : TGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCT : 3155986 322 : rpTyrGlyAsnAspValSerLeuAsn >>>> Target Intron 1 >>>> S : 330 |||||||||||!!:|||!.!|||!!. 73 bp | rpTyrGlyAsnGluValLysLeuLys++ ++S 3155987 : GGTACGGGAACGAAGTTAAGCTGAAGgt.........................agA : 3156086 331 : erIleGlnValLysAsnAlaIleTyrGluMetAspTrpThrIleCysCysMetPhe : 348 ||:!!:!!:!!...||| !|||!:!.!.:!:||||||||| ! ! !! ! erLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAla 3156087 : GCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGCT : 3156140 349 : GlnLeuLysLysPheIleIleIleMetAlaArgSerLeuLysProIleGlnPheSe : 367 ! !::!!!..!.:!!! !!!:||| !|||:!!! !..!||||||:!!.!!! ThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleIl 3156141 : ACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCAT : 3156197 368 : rValGlySerValLeuProMetAsnLeuAspSerPheIle : 380 ! !! ! !!|||||| !!:!!|||||||||||||||:!! eSerValArgValLeuSerValAsnLeuAspSerPheVal 3156198 : CAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTC : 3156238 vulgar: NvOr104PSE 283 380 . KQ414646.1 3155877 3156238 + 147 M 10 30 G 1 0 M 35 105 5 0 2 I 0 69 3 0 2 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155878 3156238 147 + . gene_id 2 ; sequence NvOr104PSE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3155878 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155878 3156012 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3156013 3156014 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156013 3156085 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3156084 3156085 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156086 3156238 . + . KQ414646.1 exonerate:protein2genome:local exon 3156086 3156238 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155878 3156238 147 + . alignment_id 2 ; Query NvOr104PSE ; Align 3155878 284 30 ; Align 3155908 295 105 ; Align 3156086 330 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr104PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 329 -> 379 Target range: 3161001 -> 3161151 330 : SerIleGlnValLysAsnAlaIleTyrGluMetAspTrpThrIleCysCysMetPh : 348 |||:!!:!!:!! :!!.!!:!!!:!|||! :!!|||||| ! !!..! SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSe 3161002 : AGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAG : 3161056 349 : eGlnLeuLysLysPheIleIleIleMetAlaArgSerLeuLysProIleGlnPheS : 367 ! !|||! !.!!:!:! |||||| !||||||||||||||||||:!!|||! rThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheT 3161057 : CACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCA : 3161113 368 : erValGlySerValLeuProMetAsnLeuAspSerPhe : 379 !!! !!.!! !|||!!!|||:!:||||||!!:|||||| hrGlyAlaPheValPheProValAsnLeuGluSerPhe 3161114 : CCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTT : 3161151 vulgar: NvOr104PSE 329 379 . KQ414646.1 3161001 3161151 + 108 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3161002 3161151 108 + . gene_id 3 ; sequence NvOr104PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3161002 3161151 . + . KQ414646.1 exonerate:protein2genome:local exon 3161002 3161151 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3161002 3161151 108 + . alignment_id 3 ; Query NvOr104PSE ; Align 3161002 330 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr104PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 328 -> 380 Target range: 3178743 -> 3178899 329 : AsnSerIleGlnValLysAsnAlaIleTyrGluMetAspTrpThrIleCysCysMe : 347 .!.||| !:!!||| .!.|||||||||||||||||||||||| ! ! !! GlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuProTh 3178744 : CAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCCCAC : 3178798 348 : tPheGlnLeuLysLysPheIleIleIleMetAlaArgSerLeuLysProIleGlnP : 366 ! ! !||| ! .!.:!::!:||||||||||||||| !::!|||:!!:!!. rAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValLysM 3178799 : CGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTAAAA : 3178855 367 : heSerValGlySerValLeuProMetAsnLeuAspSerPheIle : 380 !.!!! !||| !|||:!! !:!:::! !!!:||||||!!: etThrSerGlyHisValValValLeuSerAlaGluSerPheMet 3178856 : TGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATG : 3178899 vulgar: NvOr104PSE 328 380 . KQ414646.1 3178743 3178899 + 100 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178744 3178899 100 + . gene_id 4 ; sequence NvOr104PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178744 3178899 . + . KQ414646.1 exonerate:protein2genome:local exon 3178744 3178899 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178744 3178899 100 + . alignment_id 4 ; Query NvOr104PSE ; Align 3178744 329 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr107 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 247 Query range: 255 -> 392 Target range: 3155793 -> 3156410 256 : ArgAspIleLeuLysPheAlaGluGlnLeuSerGluThrPheIleGluThrIlePh : 274 ..!|||! !! !!:!|||.!!! ..!:!!!:!||| !||| !.!!||||| HisAspAsnCysArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePh 3155794 : cACGATAATTGCAGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTT : 3155848 275 : eIleGlnPheCysAlaGlyLeuSerValIleCysThrSerValTyrValLeuThrT : 293 |! !||||||...!.!.!! ! !!.!|||||| !!:!:!!|||:!!|||||| eThrGlnPheAlaValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrG 3155849 : CACTCAATTCGCGGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAG : 3155905 294 : hrLeuAsnIlePheSerPheGluPhePheGlyMetPheLeuTyrLeuTrpCysMet : 311 !! !:!!:!: !!.!!..!!:! ! ! !!!:.!!:!!||| ! ! |||||| lySerAspValThrProIleArgTyrValGluIleIleMetTyrSerSerCysMet 3155906 : GATCAGATGTGACGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATG : 3155959 312 : LeuGlyGlnMetPheLeuTyrCysTrpPheGlyAsnGluValValLeuAsn >>> : 329 ||| !|||!!:|||:!!|||||||||!:!|||||||||||| !|||!!. LeuThrGlnIlePheIleTyrCysTrpTyrGlyAsnGluValLysLeuLys++ 3155960 : CTCACGCAAATATTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAGgt... : 3156015 330 : > Target Intron 1 >>>> SerSerLysLeuPheHisSerIleTyrAsnMe : 339 73 bp ||| !:!!:!!! !:!!! !|||!:!:!!:! ++SerLeuGluIleSerAsnMetIlePheHisLe 3156016 : ......................agAGCCTCGAGATTTCTAATATGATTTTTCACCT : 3156116 340 : tAspTrpIleLysLeuGlnSerGlnThrGlnThrLysLeuLeuPheMetMetLeuV : 358 :||||||! ! !!!!.!.!.! |||:!! !!!.:!!||| !||||||:!! uAspTrpThrProPheAspLysAlaThrLysArgAsnIleLeuThrMetMetMetA 3156117 : CGACTGGACACCGTTCGATAAAGCTACAAAACGAAATATACTAACTATGATGATGC : 3156173 359 : alAlaSerSerProIleGlnLeuPheArgGlyAlaIleIleArgValAsnLeuAsp : 376 !|||||||||||||||:!!:!!.!!!!!! ! !:!::!! !|||||||||||| rgAlaSerSerProIleGluIleIleSerValArgValLeuSerValAsnLeuAsp 3156174 : GTGCGTCGTCGCCAATTGAAATCATCAGCGTTCGTGTGCTCTCCGTGAATCTCGAT : 3156227 377 : AlaPheIleAsn >>>> Target Intron 2 >>>> IleLeuLysPheSer : 385 :!!|||:!! ! 133 bp :!:|||||| !||| SerPheValAla++ ++LeuLeuLysThrSer 3156228 : TCGTTCGTCGCTgt.........................agTTGCTGAAAACTTCT : 3156387 386 : TyrSerAlaPheAsnIleLeu : 392 |||||||||!:!|||:!!||| TyrSerAlaTyrAsnValLeu 3156388 : TACTCGGCGTACAACGTTCTC : 3156410 vulgar: NvOr107 255 392 . KQ414646.1 3155793 3156410 + 247 M 73 219 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 129 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155794 3156410 247 + . gene_id 1 ; sequence NvOr107 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3155794 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155794 3156012 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156013 3156014 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156013 3156085 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3156084 3156085 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156086 3156241 . + . KQ414646.1 exonerate:protein2genome:local exon 3156086 3156241 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156242 3156243 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156242 3156374 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3156373 3156374 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156375 3156410 . + . KQ414646.1 exonerate:protein2genome:local exon 3156375 3156410 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155794 3156410 247 + . alignment_id 1 ; Query NvOr107 ; Align 3155794 256 219 ; Align 3156086 329 156 ; Align 3156375 381 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr107 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 257 -> 333 Target range: 3178378 -> 3178606 258 : IleLeuLysPheAlaGluGlnLeuSerGluThrPheIleGluThrIlePheIleGl : 276 ||| :::|||.!!:!! !:!!!:! ..!||| ! ! !||||||:!:|| IleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLeuGl 3178379 : atttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCTGCA : 3178433 277 : nPheCysAlaGlyLeuSerValIleCysThrSerValTyrValLeuThrThrLeuA : 295 ||||! ! !.!!! !!!!|||:!:||| !|||:!!||| !:!!:!!|||:!!| nPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrIleA 3178434 : ATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGATTA : 3178490 296 : snIlePheSerPheGluPhePheGlyMetPheLeuTyrLeuTrpCysMetLeuGly : 313 || !||||||.!..!.||| !! !! !! !||||||!! ||||||||| ! snProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeuThr 3178491 : ATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACG : 3178544 314 : GlnMetPheLeuTyrCysTrpPheGlyAsnGluValValLeuAsnSerSerLysLe : 332 |||:!!!:!|||||||||||||||||||||||||||..!|||!!. !.!!! :! GlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLysValGlyThrVa 3178545 : CAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAGGTTGGCACCGT : 3178601 333 : uPhe : 333 !||| lPhe 3178602 : GTTT : 3178606 vulgar: NvOr107 257 333 . KQ414646.1 3178378 3178606 + 180 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178379 3178606 180 + . gene_id 2 ; sequence NvOr107 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178379 3178606 . + . KQ414646.1 exonerate:protein2genome:local exon 3178379 3178606 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178379 3178606 180 + . alignment_id 2 ; Query NvOr107 ; Align 3178379 258 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr107 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 259 -> 325 Target range: 3158452 -> 3158647 260 : LysPheAlaGluGlnLeuSerGluThrPheIleGluThrIlePheIleGlnPheCy : 278 !:!|||:!!:!!:!!:!!!:!||| !|||! ! !! !:!:.!! !|||||||| ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3158453 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3158507 279 : sAlaGlyLeuSerValIleCysThrSerValTyrValLeuThrThrLeuAsnIleP : 297 | !.!!:!!|||||||||||| !!:!:!!||| !:!!||| !:!!!!.!!: sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMet- 3158508 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATG- : 3158564 298 : heSerPheGluPhePheGlyMetPheLeuTyrLeuTrpCysMetLeuGlyGlnMet : 315 ... :::||| :::.!.||||||! !!::|||! :!! !|||!!: --AspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 3158565 : --GAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 3158615 316 : PheLeuTyrCysTrpPheGlyAsnGluVal : 325 |||! !|||||||||!:!|||||||||||| PheTyrTyrCysTrpTyrGlyAsnGluVal 3158616 : TTTTACTATTGTTGGTACGGCAACGAAGTG : 3158647 vulgar: NvOr107 259 325 . KQ414646.1 3158452 3158647 + 136 M 37 111 G 1 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158453 3158647 136 + . gene_id 3 ; sequence NvOr107 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158453 3158647 . + . KQ414646.1 exonerate:protein2genome:local exon 3158453 3158647 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3158453 3158647 136 + . alignment_id 3 ; Query NvOr107 ; Align 3158453 260 111 ; Align 3158564 298 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr107 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 259 -> 325 Target range: 3164980 -> 3165175 260 : LysPheAlaGluGlnLeuSerGluThrPheIleGluThrIlePheIleGlnPheCy : 278 !:!|||:!!:!!:!!:!!!:!||| !|||! ! !! !:!:.!! !|||||||| ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3164981 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3165035 279 : sAlaGlyLeuSerValIleCysThrSerValTyrValLeuThrThrLeuAsnIleP : 297 | !.!!:!!|||||||||||| !!:!:!!||| !:!!||| !:!!!!.!!: sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMet- 3165036 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATG- : 3165092 298 : heSerPheGluPhePheGlyMetPheLeuTyrLeuTrpCysMetLeuGlyGlnMet : 315 ... :::||| :::.!.||||||! !!::|||! :!! !|||!!: --AspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 3165093 : --GAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 3165143 316 : PheLeuTyrCysTrpPheGlyAsnGluVal : 325 |||! !|||||||||!:!|||||||||||| PheTyrTyrCysTrpTyrGlyAsnGluVal 3165144 : TTTTACTATTGCTGGTACGGCAACGAAGTG : 3165175 vulgar: NvOr107 259 325 . KQ414646.1 3164980 3165175 + 136 M 37 111 G 1 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164981 3165175 136 + . gene_id 4 ; sequence NvOr107 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164981 3165175 . + . KQ414646.1 exonerate:protein2genome:local exon 3164981 3165175 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3164981 3165175 136 + . alignment_id 4 ; Query NvOr107 ; Align 3164981 260 111 ; Align 3165092 298 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr107 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 255 -> 325 Target range: 3180448 -> 3180658 256 : ArgAspIleLeuLysPheAlaGluGlnLeuSerGluThrPheIleGluThrIlePh : 274 ||| ! !! !!..!!.|||||| !:!!!:!!!:!:!.!. !|||!!:|| ArgPheCysCysSerLeuAlaGluIleMetAsnAspSerLeuGlnLeuThrMetPh 3180449 : CGATTCTGTTGCAGTTTAGCTGAAATAATGAACGACAGTCTACAGCTGACGATGTT : 3180503 275 : eIleGlnPheCysAlaGlyLeuSerValIleCysThrSerValTyrValLeuThrT : 293 | !||||||! !!.!.!!!!!! !||||||||| !|||:!! ! !||| !! eAlaGlnPhePheGlySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuA 3180504 : CGCCCAGTTTTTCGGAAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAA : 3180560 294 : hrLeuAsnIlePheSerPheGluPhePheGlyMetPheLeuTyrLeuTrpCysMet : 311 .! !:!!|||.!!||| !||||||!!.!.!! !......|||||| ::: snAlaAspIleLeuSerThrGluPheLeuAlaThrIlePheTyrLeuSerSerIle 3180561 : ACGCAGATATTCTCAGCACCGAATTCTTAGCGACGAtattttatctgagctcgatA : 3180614 312 : LeuGlyGlnMetPheLeuTyrCysTrpPheGlyAsnGluVal : 325 ||| !|||! |||||||||||||||!:!|||||||||||| LeuLeuGlnSerPheLeuTyrCysTrpTyrGlyAsnGluVal 3180615 : CTGCTGCAGAGCTTTCTTTACTGTTGGTACGGAAACGAAGTG : 3180658 vulgar: NvOr107 255 325 . KQ414646.1 3180448 3180658 + 135 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180449 3180658 135 + . gene_id 5 ; sequence NvOr107 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180449 3180658 . + . KQ414646.1 exonerate:protein2genome:local exon 3180449 3180658 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180449 3180658 135 + . alignment_id 5 ; Query NvOr107 ; Align 3180449 256 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr100 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 215 Query range: 255 -> 388 Target range: 3178372 -> 3178923 256 : AsnGluIleTyrGluPheSerLysValLeuAsnAsnLysPheGlnAlaValLeuLe : 274 ||| ||| ...|||!!!:!!..!:!!|||!.! !|||||| !:!!:!!!! AsnPheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePh 3178373 : aatttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTT : 3178427 275 : uIleGlnValIleThrSerIleProAsnLeuCysIleAsnValTyrThrLeuSerL : 293 !:!:||| !! !! !||| !! ||||||:!:!:!:!!|||! !:!!|||! eLeuGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerT 3178428 : CCTGCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGA : 3178484 294 : ysTyrSerGlyIleIleAsnMetAspTyrIleSerIlePhePheAsnThrThrSer : 311 ! !!:! ! .!!!:!|||:!!!:!:!!!!! ! !! ! !! ! !!!! hrIleAsnPro---PheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCys 3178485 : CGATTAATCCA---TTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGT : 3178535 312 : SerLeuIleGlnLeuPheIleThrCysTrpTyrGlyAsnGluValLeuLeuSer : 330 ! !|||! |||:!!!:!:!! !||||||!:!|||||||||||| !|||!.! MetLeuThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys++ 3178536 : ATGCTCACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAGgt : 3178592 331 : >>>> Target Intron 1 >>>> SerLeuGlnIleLysLysSerIleTyrGl : 339 155 bp ||| !:!!:!! :!!:!!|||||||| ++SerGluLysValGlyGluAlaIleTyrGl 3178593 : .........................agAGCGAAAAAGTAGGCGAAGCTATTTACGA : 3178774 340 : uMetAspTrpThrLysLeuAspValProThrLysLysLeuLeuIleValIleMetA : 358 ||||||||||||| !||| !..! !! !!:!||| !|||:!::!!||||||| uMetAspTrpThrAlaLeuProThrAspIleArgLysAspLeuLeuLeuIleMetA 3178775 : GATGGACTGGACGGCACTTCCCACCGATATAAGGAAAGATCTATTGCTGATCATGG : 3178831 359 : laArgSerLeuArgProIleAlaPheSerValAlaHisValIleProMetAsnIle : 376 |||||||| !||||||:!! !.!.!!! !!.!||||||:!! !:!:::! ! laArgSerLysArgProValLysMetThrSerGlyHisValValValLeuSerAla 3178832 : CGAGATCAAAACGACCTGTTAAAATGACAAGCGGCCACGTCGTCGTTTTATCCGCA : 3178885 377 : GluSerPheIleLysIleIleLysIleSerAsnSer : 388 |||||||||!!:...:!!! !!:!||||||.!.!:! GluSerPheMetSerValSerArgIleSerGluAsn 3178886 : GAATCATTTATGTCTGTTAGTAGAATTTCCGAAAAT : 3178923 vulgar: NvOr100 255 388 . KQ414646.1 3178372 3178923 + 215 M 41 123 G 1 0 M 32 96 5 0 2 I 0 151 3 0 2 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178373 3178923 215 + . gene_id 1 ; sequence NvOr100 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3178373 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178373 3178591 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3178592 3178593 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3178592 3178746 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3178745 3178746 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3178747 3178923 . + . KQ414646.1 exonerate:protein2genome:local exon 3178747 3178923 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178373 3178923 215 + . alignment_id 1 ; Query NvOr100 ; Align 3178373 256 123 ; Align 3178496 298 96 ; Align 3178747 330 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr100 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 188 Query range: 258 -> 396 Target range: 3174931 -> 3175574 259 : TyrGluPheSerLysValLeuAsnAsnLysPheGlnAlaValLeuLeuIleGlnVa : 277 !:!..!|||:!!:!!:!!:!!||| ||||||... !..!:!! !! ||| ! PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3174932 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3174986 278 : lIleThrSerIleProAsnLeuCysIleAsnValTyrThrLeuSerLysTyrSerG : 296 !:!:..!!!!! ! !!..:!!|||.!!|||:!!!:! !|||!!!:!! !!.! eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLys- 3174987 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAG- : 3175043 297 : lyIleIleAsnMetAspTyrIleSerIlePhePheAsnThrThrSerSerLeuIle : 314 :!: !! !.!. !:!!:!!:!:.!. !! !..!||| !!!! ! -----ValTyrSerGlnValLeuAlaLeuIleProPheMetValSerValPheAla 3175044 : -----GTGTATTCGCAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCA : 3175091 315 : GlnLeuPheIleThrCysTrpTyrGlyAsnGluValLeu >>>> Target Int : 328 |||:!!||| ! !||||||||||||||||||..! ! 80 bp GlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLys++ 3175092 : CAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAgt............... : 3175135 329 : ron 1 >>>> LeuSerSerLeuGlnIleLysLysSerIleTyrGluMetAspTr : 342 ||||||:!!||| ! !!!:!!!:!|||! :!!|| ++------SerLeuGluIleCysAspThrValPheGluSerAsnTr 3175136 : ..........ag------AGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTG : 3175249 343 : pThrLysLeuAspValProThrLysLysLeuLeuIleValIleMetAlaArgSerL : 361 |||| !|||..! ! !||||||||| !|||:!:..!|||||| !||||||| pThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgSerL 3175250 : GACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCGT : 3175306 362 : euArgProIleAlaPheSerValAlaHisValIleProMetAsnIleGluSerPhe : 379 ||!:!||||||! !|||!!!! !||| !|||.!!|||:!:|||:!:||||||||| euLysProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSerPhe 3175307 : TGAAGCCAATAGAATTCACCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTT : 3175360 380 : IleLys >>>> Target Intron 2 >>>> IleIleLysIleSerAsnSer : 388 ! !!.. 161 bp :!::!:|||! !||| !!||| LysSer++ ++LeuValLysThrSerTyrSer 3175361 : AAAAGTgt.........................agTTGGTGAAAACTTCCTATTCG : 3175548 389 : AlaPheAsnValLeuGlnGlnThr : 396 !.!|||||||||:!!||||||||| ValPheAsnValIleGlnGlnThr 3175549 : GTATTCAACGTAATCCAGCAAACG : 3175574 vulgar: NvOr100 258 396 . KQ414646.1 3174931 3175574 + 188 M 37 111 G 2 0 M 30 90 5 0 2 I 0 76 3 0 2 G 2 0 M 52 156 5 0 2 I 0 157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174932 3175574 188 + . gene_id 2 ; sequence NvOr100 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3174932 3175132 . + . KQ414646.1 exonerate:protein2genome:local exon 3174932 3175132 . + . insertions 0 ; deletions 2 KQ414646.1 exonerate:protein2genome:local splice5 3175133 3175134 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3175133 3175212 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3175211 3175212 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3175213 3175368 . + . KQ414646.1 exonerate:protein2genome:local exon 3175213 3175368 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3175369 3175370 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3175369 3175529 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3175528 3175529 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3175530 3175574 . + . KQ414646.1 exonerate:protein2genome:local exon 3175530 3175574 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3174932 3175574 188 + . alignment_id 2 ; Query NvOr100 ; Align 3174932 259 111 ; Align 3175043 298 90 ; Align 3175213 330 156 ; Align 3175530 382 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr100 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 329 -> 396 Target range: 3161001 -> 3161363 330 : SerLeuGlnIleLysLysSerIleTyrGluMetAspTrpThrLysLeuAspValPr : 348 ||||||:!!||| ! !!!:!!!:!|||! :!!|||||| !|||..! ! SerLeuGluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSe 3161002 : AGCCTTGAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAG : 3161056 349 : oThrLysLysLeuLeuIleValIleMetAlaArgSerLeuArgProIleAlaPheS : 367 !||||||||| !|||:!:..!|||||| !|||||||||!:!||||||! !|||! rThrLysLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheT 3161057 : CACCAAAAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCA : 3161113 368 : erValAlaHisValIleProMetAsnIleGluSerPheIleLys >>>> Targe : 382 !!! !||| !|||.!!|||:!:|||:!:|||||||||! !!.. hrGlyAlaPheValPheProValAsnLeuGluSerPheLysSer++ 3161114 : CCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAAAGTgt.......... : 3161160 383 : t Intron 1 >>>> IleIleLysIleSerAsnSerAlaPheAsnValLeuGln : 394 161 bp :!::!:|||! !||| !!|||!.!|||||||||:!!||| ++LeuValLysThrSerTyrSerValPheAsnValIleGln 3161161 : ...............agTTGGTGAAAACTTCCTATTCGGTATTCAACGTAATCCAG : 3161355 395 : GlnThr : 396 |||||| GlnThr 3161356 : CAAACG : 3161363 vulgar: NvOr100 329 396 . KQ414646.1 3161001 3161363 + 150 M 52 156 5 0 2 I 0 157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3161002 3161363 150 + . gene_id 3 ; sequence NvOr100 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3161002 3161157 . + . KQ414646.1 exonerate:protein2genome:local exon 3161002 3161157 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3161158 3161159 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3161158 3161318 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3161317 3161318 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3161319 3161363 . + . KQ414646.1 exonerate:protein2genome:local exon 3161319 3161363 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3161002 3161363 150 + . alignment_id 3 ; Query NvOr100 ; Align 3161002 330 156 ; Align 3161319 382 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr100 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 259 -> 328 Target range: 3155805 -> 3156009 260 : GluPheSerLysValLeuAsnAsnLysPheGlnAlaValLeuLeuIleGlnValIl : 278 ..!|||!!! :!!:!!|||.!.:!!|||:!! !!.!:!!!!!! !||| !! ArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAl 3155806 : AGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGC : 3155860 279 : eThrSerIleProAsnLeuCysIleAsnValTyrThrLeuSerLysTyrSerGlyI : 297 ..!|||! ! ! :!!|||.!!|||:!!||| !|||!!! ! |||! !: aValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGly---SerAspV 3155861 : GGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGA---TCAGATG : 3155914 298 : leIleAsnMetAspTyrIleSerIlePhePheAsnThrThrSerSerLeuIleGln : 315 !:! !!: |||:!:..!|||.!!.!. !!!:!!:!!!!! !|||! ||| alThrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGln 3155915 : TGACGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAA : 3155968 316 : LeuPheIleThrCysTrpTyrGlyAsnGluValLeuLeu : 328 :!!|||||| !||||||||||||||||||||| !||| IlePheIleTyrCysTrpTyrGlyAsnGluValLysLeu 3155969 : ATATTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTG : 3156009 vulgar: NvOr100 259 328 . KQ414646.1 3155805 3156009 + 116 M 34 102 G 1 0 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155806 3156009 116 + . gene_id 4 ; sequence NvOr100 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155806 3156009 . + . KQ414646.1 exonerate:protein2genome:local exon 3155806 3156009 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3155806 3156009 116 + . alignment_id 4 ; Query NvOr100 ; Align 3155806 260 102 ; Align 3155908 295 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr100 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 326 -> 382 Target range: 3150860 -> 3151028 327 : LeuLeuSerSerLeuGlnIleLysLysSerIleTyrGluMetAspTrpThrLysLe : 345 :!!:!!..!|||:!!:!!||| !:::!!!|||!:!||||||||||||! ! || IleIleGlnSerValGluIleValArgThrIlePheGluMetAspTrpIleProLe 3150861 : ATCATTCAGAGCGTCGAGATTGTGCGCACGATCTTCGAAATGGATTGGATACCTCT : 3150915 346 : uAspValProThrLysLysLeuLeuIleValIleMetAlaArgSerLeuArgProI : 364 |.!. ! !! !|||||| !|||||||||:!: ! !|||:!!:!!! !|||| uGlnAsnGlyIleLysLysAspLeuIleValValAlaArgArgAlaMetIleProI 3150916 : CCAGAACGGTATCAAGAAGGATTTGATAGTCGTGGCGAGAAGAGCGATGATCCCGA : 3150972 365 : leAlaPheSerValAlaHisValIleProMetAsnIleGluSerPheIleLysIle : 382 ||! !!!.!!! !|||:!!:!!.!! !!|||:!!:!:.!.!!!|||:!!!..:!! leGluLeuThrCysAlaTyrMetPheThrMetAspLeuAsnThrPheValSerVal 3150973 : TCGAGTTGACCTGCGCGTACATGTTCACCATGGACTTGAACACCTTCGTCAGCGTC : 3151026 vulgar: NvOr100 326 382 . KQ414646.1 3150860 3151028 + 107 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150861 3151028 107 + . gene_id 5 ; sequence NvOr100 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150861 3151028 . + . KQ414646.1 exonerate:protein2genome:local exon 3150861 3151028 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150861 3151028 107 + . alignment_id 5 ; Query NvOr100 ; Align 3150861 327 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr100 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 259 -> 326 Target range: 3158452 -> 3158647 260 : GluPheSerLysValLeuAsnAsnLysPheGlnAlaValLeuLeuIleGlnValIl : 278 ..!||||||||| !:!!|||.!.:!!|||:!! !:!!|||:!! !||| !! ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3158453 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3158507 279 : eThrSerIleProAsnLeuCysIleAsnValTyrThrLeuSerLysTyrSerGlyI : 297 !! !|||!!: !! :!!|||.!!|||:!!||| !:!!!!!:!! !!.! sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---- 3158508 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---- : 3158561 298 : leIleAsnMetAspTyrIleSerIlePhePheAsnThrThrSerSerLeuIleGln : 315 !!::!: ::::::...|||.!..!! !!:!! !!!!!!!:!!! ||| --MetAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGln 3158562 : --ATGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAG : 3158612 316 : LeuPheIleThrCysTrpTyrGlyAsnGluVal : 326 :!!||| ! !||||||||||||||||||||| IlePheTyrTyrCysTrpTyrGlyAsnGluVal 3158613 : ATATTTTACTATTGTTGGTACGGCAACGAAGTG : 3158647 vulgar: NvOr100 259 326 . KQ414646.1 3158452 3158647 + 104 M 36 108 G 2 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158453 3158647 104 + . gene_id 6 ; sequence NvOr100 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158453 3158647 . + . KQ414646.1 exonerate:protein2genome:local exon 3158453 3158647 . + . insertions 0 ; deletions 2 KQ414646.1 exonerate:protein2genome:local similarity 3158453 3158647 104 + . alignment_id 6 ; Query NvOr100 ; Align 3158453 260 108 ; Align 3158561 298 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr100 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 259 -> 326 Target range: 3164980 -> 3165175 260 : GluPheSerLysValLeuAsnAsnLysPheGlnAlaValLeuLeuIleGlnValIl : 278 ..!||||||||| !:!!|||.!.:!!|||:!! !:!!|||:!! !||| !! ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3164981 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3165035 279 : eThrSerIleProAsnLeuCysIleAsnValTyrThrLeuSerLysTyrSerGlyI : 297 !! !|||!!: !! :!!|||.!!|||:!!||| !:!!!!!:!! !!.! sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---- 3165036 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---- : 3165089 298 : leIleAsnMetAspTyrIleSerIlePhePheAsnThrThrSerSerLeuIleGln : 315 !!::!: ::::::...|||.!..!! !!:!! !!!!!!!:!!! ||| --MetAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGln 3165090 : --ATGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAG : 3165140 316 : LeuPheIleThrCysTrpTyrGlyAsnGluVal : 326 :!!||| ! !||||||||||||||||||||| IlePheTyrTyrCysTrpTyrGlyAsnGluVal 3165141 : ATATTTTACTATTGCTGGTACGGCAACGAAGTG : 3165175 vulgar: NvOr100 259 326 . KQ414646.1 3164980 3165175 + 104 M 36 108 G 2 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164981 3165175 104 + . gene_id 7 ; sequence NvOr100 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164981 3165175 . + . KQ414646.1 exonerate:protein2genome:local exon 3164981 3165175 . + . insertions 0 ; deletions 2 KQ414646.1 exonerate:protein2genome:local similarity 3164981 3165175 104 + . alignment_id 7 ; Query NvOr100 ; Align 3164981 260 108 ; Align 3165089 298 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr108PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 244 Query range: 128 -> 261 Target range: 3155805 -> 3156410 129 : LysPheSerLysLeuLeuSerGluThrPheIleGlnValLeuValIleGlnPheCy : 147 !:!|||!!! :!!:!!!:!||| !||| ..!!.!:!! !!! !||||||.. ArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAl 3155806 : AGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGC : 3155860 148 : sAlaSerLeuThrValPheCysThrSerIleTyrMetLeuThrLysIleLysValA : 166 .!.!||| ! !!.!.!.||| !!:!:!!|||:!:|||||| ! ! ! |||! aValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValT 3155861 : GGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGA : 3155917 167 : snThrLeuAspPheLeuLeuMetThrThrTyrLeuIleCysMetLeuAsnGlnIle : 184 .. !!:!! !:!:!! !!!:! !! !||| !! !|||||||||!..|||||| hrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIle 3155918 : CGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATA : 3155971 185 : LeuLeuTyrCysTrpTyrGlyAsnGluValMetLeuAsn >>>> Target Int : 198 !!!:!!||||||||||||||||||||||||! !|||!!. 73 bp PheIleTyrCysTrpTyrGlyAsnGluValLysLeuLys++ 3155972 : TTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAGgt............... : 3156015 199 : ron 1 >>>> SerGlnLysLeuValGlnSerIleTyrAsnAlaAspTrpIleAl : 212 |||! :!!:!! !.!.! !|||!:!:!! !||||||! ! ! ++SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrPr 3156016 : ..........agAGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACC : 3156128 213 : aLeuHisGlyLysThrGlnLysThrLeuLeuLeuMetMetLeuValAlaSerSerP : 231 !!!! !! ! |||:!!::!!.!:!!||| !||||||:!! !|||||||||| oPheAspLysAlaThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerP 3156129 : GTTCGATAAAGCTACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGC : 3156185 232 : roIleGlnLeuPheGluGlyAlaIleIleLysValAsnLeuAspAlaPheLeuAsn : 249 |||||:!!:!!.!!...! ! !:!::!!...||||||||||||:!!|||:!! ! roIleGluIleIleSerValArgValLeuSerValAsnLeuAspSerPheValAla 3156186 : CAATTGAAATCATCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCT : 3156239 250 : >>>> Target Intron 2 >>>> IleLeuLysPheSerTyrSerAlaPhe : 258 133 bp :!:|||||| !||||||||||||!:! ++ ++LeuLeuLysThrSerTyrSerAlaTyr 3156240 : gt.........................agTTGCTGAAAACTTCTTACTCGGCGTAC : 3156399 259 : AsnIleLeu : 261 |||:!!||| AsnValLeu 3156400 : AACGTTCTC : 3156410 vulgar: NvOr108PSE 128 261 . KQ414646.1 3155805 3156410 + 244 M 69 207 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 129 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155806 3156410 244 + . gene_id 1 ; sequence NvOr108PSE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3155806 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155806 3156012 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156013 3156014 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156013 3156085 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3156084 3156085 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156086 3156241 . + . KQ414646.1 exonerate:protein2genome:local exon 3156086 3156241 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156242 3156243 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156242 3156374 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3156373 3156374 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156375 3156410 . + . KQ414646.1 exonerate:protein2genome:local exon 3156375 3156410 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155806 3156410 244 + . alignment_id 1 ; Query NvOr108PSE ; Align 3155806 129 207 ; Align 3156086 198 156 ; Align 3156375 250 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr108PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 240 Query range: 30 -> 196 Target range: 3178003 -> 3178588 31 : ProValTyrSerTrpIleProCysAsnIleAsnPheSerSerCysPheTrpAlaCy : 49 |||:!!! !..!|||:!:|||! !:!!:!:::!! ..!!.!! !:! ! !! ProIleSerAspTrpValProTyrAspLeuSerSerGlnLysLeuTyrThrIleSe 3178004 : CCAATATCCGACTGGGTGCCTTACGATTTGTCCTCGCAAAAATTGTACACGATATC : 3178058 50 : sTyrLeuHisGlnSerValGlyThrAlaThrIleAlaIleValHisValAlaCysG : 68 ! |||||||||!!!:!!||| ! !..! !|||! !..! !|||||| !| rLeuLeuHisGlnThrIleGlyLeuMetValCysAlaAsnThrSerValAlaAsnG 3178059 : TCTGTTGCATCAAACGATAGGCCTGATGGTCTGTGCGAACACCAGCGTGGCAAACG : 3178115 69 : luThrLeuValThrGlyPheMetLeuGlnIleCysAlaGlnLeuAsnValLeuAsn : 86 ||||||||:!!.!!|||.!.|||:!!||| ! !!||||||!!!.!.:!!!!! ! luThrLeuIleAlaGlyLeuMetIleGlnAlaGlyAlaGlnPheGluIlePheCys 3178116 : AAACACTTATCGCAGGGCTGATGATACAAGCTGGCGCGCAATTCGAGATATTTTGC : 3178169 87 : HisArgValLeuSerIleAspLeuLysIleArgAsnLeuThrLeuArgGluLysAs : 105 ||||||!.! !!:!:!! ! ! !:!! !:!! !! ! !!.!...:!!.. HisArgAlaArgAsnLeuThrAlaLeuLeuLeuAspThrArgArgAsnSerGluSe 3178170 : CATCGAGCGAGAAATCTAACCGCCCTACTCTTGGATACCAGAAGAAACAGCGAGTC : 3178226 106 : pGluAsnArgIleLeuMetAlaGluThrPheLeuThrAsnAlaCysValAlaAspH : 124 !..!.!. !.!! !! ! !.! ::: ... ||| ! !!| rArgGluAlaPheLysThrArgCysAsnArgIleLeuGlyAsnPheValGluTyrH 3178227 : TAGAGAAGCTTTTAAGACCAGATGTAATCGaatacttggaaatttcgtggaATATC : 3178283 125 : isAsnGlyIleLeu{Ly} >>>> Target Intron 1 >>>> {s}PheSer : 131 || ! !:!!! !{||} 87 bp {|}|||!!! isLeuGluValTyr{Ly}++ ++{s}PheThr 3178284 : ATCTGGAAGTTTAC{aa}gt.........................ag{a}TTTACA : 3178391 132 : LysLeuLeuSerGluThrPheIleGlnValLeuValIleGlnPheCysAlaSerLe : 150 :!! !:!!!:! ..!||| ! :!!:!! !!:!:||||||! ! !|||! GlnThrValAsnThrValPheGlnTyrMetIlePheLeuGlnPheSerIleSerSe 3178392 : CAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCTGCAATTTTCCATCAGTTC : 3178448 151 : uThrValPheCysThrSerIleTyrMetLeuThrLysIleLysValAsnThrLeuA : 169 !||||||.!.||| !|||||||||! :!!:!!! !|||!!. ! !!:!:!!: rThrValLeuCysLeuSerIleTyrLysMetSerThrIleAsnProPheSerMetA 3178449 : GACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGATTAATCCATTTAGCATGA : 3178505 170 : spPheLeuLeuMetThrThrTyrLeuIleCysMetLeuAsnGlnIleLeuLeuTyr : 187 !!|||:!!! ! .!!:!!|||||| !|||||||||!..|||:!:! !|||||| snPheValTrpCysAlaSerTyrLeuCysCysMetLeuThrGlnValTyrLeuTyr 3178506 : ACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACGCAGGTGTATTTATAC : 3178559 188 : CysTrpTyrGlyAsnGluValMetLeu : 196 ||||||!:!||||||||||||! !||| CysTrpPheGlyAsnGluValThrLeu 3178560 : TGTTGGTTCGGGAACGAGGTGACGTTG : 3178588 vulgar: NvOr108PSE 30 196 . KQ414646.1 3178003 3178588 + 240 M 98 294 S 0 2 5 0 2 I 0 83 3 0 2 S 1 1 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178004 3178588 240 + . gene_id 2 ; sequence NvOr108PSE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3178004 3178299 . + . KQ414646.1 exonerate:protein2genome:local exon 3178004 3178299 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178300 3178301 . + . intron_id 1 ; splice_site "gt" KQ414646.1 exonerate:protein2genome:local intron 3178300 3178386 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3178385 3178386 . + . intron_id 0 ; splice_site "ag" KQ414646.1 exonerate:protein2genome:local cds 3178387 3178588 . + . KQ414646.1 exonerate:protein2genome:local exon 3178387 3178588 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178004 3178588 240 + . alignment_id 2 ; Query NvOr108PSE ; Align 3178004 31 294 ; Align 3178388 130 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr108PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 128 -> 194 Target range: 3158452 -> 3158647 129 : LysPheSerLysLeuLeuSerGluThrPheIleGlnValLeuValIleGlnPheCy : 147 !:!||||||||| !:!!!:!||| !|||! !! !:!!|||:!! !|||||||| ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3158453 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3158507 148 : sAlaSerLeuThrValPheCysThrSerIleTyrMetLeuThrLysIleLysValA : 166 | !|||:!!:!!|||.!!||| !!:!:!!||| :!!|||:!!||||||:!!: sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetA 3158508 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGG : 3158564 167 : snThrLeuAspPheLeuLeuMetThrThrTyrLeuIleCysMetLeuAsnGlnIle : 184 !:||| |||::: ::: ! !|||! !.!!|||! :!!!..|||||| spThr---LysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 3158565 : Acacg---aaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 3158615 185 : LeuLeuTyrCysTrpTyrGlyAsnGluVal : 194 !!!! !|||||||||||||||||||||||| PheTyrTyrCysTrpTyrGlyAsnGluVal 3158616 : TTTTACTATTGTTGGTACGGCAACGAAGTG : 3158647 vulgar: NvOr108PSE 128 194 . KQ414646.1 3158452 3158647 + 162 M 39 117 G 1 0 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158453 3158647 162 + . gene_id 3 ; sequence NvOr108PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158453 3158647 . + . KQ414646.1 exonerate:protein2genome:local exon 3158453 3158647 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3158453 3158647 162 + . alignment_id 3 ; Query NvOr108PSE ; Align 3158453 129 117 ; Align 3158570 169 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr108PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 128 -> 194 Target range: 3164980 -> 3165175 129 : LysPheSerLysLeuLeuSerGluThrPheIleGlnValLeuValIleGlnPheCy : 147 !:!||||||||| !:!!!:!||| !|||! !! !:!!|||:!! !|||||||| ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3164981 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3165035 148 : sAlaSerLeuThrValPheCysThrSerIleTyrMetLeuThrLysIleLysValA : 166 | !|||:!!:!!|||.!!||| !!:!:!!||| :!!|||:!!||||||:!!: sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetA 3165036 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGG : 3165092 167 : snThrLeuAspPheLeuLeuMetThrThrTyrLeuIleCysMetLeuAsnGlnIle : 184 !:||| |||::: ::: ! !|||! !.!!|||! :!!!..|||||| spThr---LysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 3165093 : Acacg---aaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 3165143 185 : LeuLeuTyrCysTrpTyrGlyAsnGluVal : 194 !!!! !|||||||||||||||||||||||| PheTyrTyrCysTrpTyrGlyAsnGluVal 3165144 : TTTTACTATTGCTGGTACGGCAACGAAGTG : 3165175 vulgar: NvOr108PSE 128 194 . KQ414646.1 3164980 3165175 + 162 M 39 117 G 1 0 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164981 3165175 162 + . gene_id 4 ; sequence NvOr108PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164981 3165175 . + . KQ414646.1 exonerate:protein2genome:local exon 3164981 3165175 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3164981 3165175 162 + . alignment_id 4 ; Query NvOr108PSE ; Align 3164981 129 117 ; Align 3165098 169 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr108PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 127 -> 261 Target range: 3174931 -> 3175565 128 : LeuLysPheSerLysLeuLeuSerGluThrPheIleGlnValLeuValIleGlnPh : 146 !!!!:!|||:!!:!!:!!:!!!:!! !! !|||! ! ..!:!!!.!! ||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3174932 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3174986 147 : eCysAlaSerLeuThrValPheCysThrSerIleTyrMetLeuThrLysIleLysV : 165 | !.!!!! !! !..!.!.||| !!:!:!!!:! ||||||:!!! !|||| eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3174987 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3175043 166 : alAsnThrLeuAspPheLeuLeuMetThrThrTyrLeuIleCysMetLeuAsnGln : 183 || !!:!! .!. !!||| !:!!! ! !!!:!:!!:!! !!:!!!!! ||| alTyrSer---GlnValLeuAlaLeuIleProPheMetValSerValPheAlaGln 3175044 : TGTATTCG---CAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAG : 3175094 184 : IleLeuLeuTyrCysTrpTyrGlyAsnGluValMetLeuAsnSerGln{L} >>> : 200 |||!!!! !! !||||||||||||||||||..!! :!!!!. !!::{:} IlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLysValArg{G}-+ 3175095 : ATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGGTACGT{G}at... : 3175148 201 : > Target Intron 1 >>>> {ys}LeuValGlnSerIleTyrAsnAlaAspT : 210 74 bp {!!}:!! !.!.!!!:!!!:!.!.::!:!!| -+{lu}IleCysAspThrValPheGluSerAsnT 3175149 : ......................tg{AA}ATTTGCGACACAGTATTCGAAAGCAACT : 3175249 211 : rpIleAlaLeuHisGlyLysThrGlnLysThrLeuLeuLeuMetMetLeuValAla : 228 ||! |||||| ! !!..|||:!!|||||||||||| !!!:|||||| !:!! rpThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgSer 3175250 : GGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCG : 3175303 229 : SerSerProIleGlnLeuPheGluGlyAlaIleIleLysValAsnLeuAspAlaPh : 247 ! !!.!||||||:!!!!! !! !.! !:!!.!! |||||||||!!::!!|| LeuLysProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSerPh 3175304 : TTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTT : 3175360 248 : eLeuAsn >>>> Target Intron 2 >>>> IleLeuLysPheSerTyrSe : 256 | !!:! 161 bp :!::!!||| !|||||||| eLysSer++ ++LeuValLysThrSerTyrSe 3175361 : TAAAAGTgt.........................agTTGGTGAAAACTTCCTATTC : 3175548 257 : rAlaPheAsnIleLeu : 261 |!.!||||||:!!:!! rValPheAsnValIle 3175549 : GGTATTCAACGTAATC : 3175565 vulgar: NvOr108PSE 127 261 . KQ414646.1 3174931 3175565 + 139 M 40 120 G 1 0 M 31 93 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 49 147 5 0 2 I 0 157 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174932 3175565 139 + . gene_id 5 ; sequence NvOr108PSE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3174932 3175145 . + . KQ414646.1 exonerate:protein2genome:local exon 3174932 3175145 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3175146 3175147 . + . intron_id 1 ; splice_site "AT" KQ414646.1 exonerate:protein2genome:local intron 3175146 3175219 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3175218 3175219 . + . intron_id 0 ; splice_site "TG" KQ414646.1 exonerate:protein2genome:local cds 3175220 3175368 . + . KQ414646.1 exonerate:protein2genome:local exon 3175220 3175368 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3175369 3175370 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3175369 3175529 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3175528 3175529 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3175530 3175565 . + . KQ414646.1 exonerate:protein2genome:local exon 3175530 3175565 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3174932 3175565 139 + . alignment_id 5 ; Query NvOr108PSE ; Align 3174932 128 120 ; Align 3175052 169 93 ; Align 3175222 201 147 ; Align 3175530 250 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr108PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 127 -> 261 Target range: 3160720 -> 3161354 128 : LeuLysPheSerLysLeuLeuSerGluThrPheIleGlnValLeuValIleGlnPh : 146 !!!!:!|||:!!:!!:!!:!!!:!! !! !|||! ! ..!:!!!.!! ||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3160721 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3160775 147 : eCysAlaSerLeuThrValPheCysThrSerIleTyrMetLeuThrLysIleLysV : 165 | !.!!!! !! !..!.!.||| !!:!:!!!:! ||||||:!!! !|||| eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3160776 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3160832 166 : alAsnThrLeuAspPheLeuLeuMetThrThrTyrLeuIleCysMetLeuAsnGln : 183 || !!:!! .!. !!||| !:!!! ! !!!:!:!!:!! !!:!!!!! ||| alTyrSer---GlnValLeuAlaLeuIleProPheMetValSerValPheAlaGln 3160833 : TGTATTCG---CAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAG : 3160883 184 : IleLeuLeuTyrCysTrpTyrGlyAsnGluValMetLeuAsnSerGlnLysLeuVa : 202 |||!!!! !! !||||||||||||||||||..!! :!!!!. !!:: ! ! !.. IlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLysValArgAspGlnTh 3160884 : ATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGGTACGTGATCAAAC : 3160940 203 : lGlnSerIleTyrAsn{Al} >>>> Target Intron 1 >>>> {a}AspT : 210 !.!.! !:::::::::{ } 74 bp {!}:!!| rAspPheLeuPheSer{Il}-+ ++{e}AsnT 3160941 : AGACTTCttattctca{at}tt.........................ag{C}AACT : 3161038 211 : rpIleAlaLeuHisGlyLysThrGlnLysThrLeuLeuLeuMetMetLeuValAla : 228 ||! |||||| ! !!..|||:!!|||||||||||| !!!:|||||| !:!! rpThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIleMetLeuArgSer 3161039 : GGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATTATGTTACGCTCG : 3161092 229 : SerSerProIleGlnLeuPheGluGlyAlaIleIleLysValAsnLeuAspAlaPh : 247 ! !!.!||||||:!!!!! !! !.! !:!!.!! |||||||||!!::!!|| LeuLysProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluSerPh 3161093 : TTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTTCCCCGTAAATTTGGAGTCTTT : 3161149 248 : eLeuAsn >>>> Target Intron 2 >>>> IleLeuLysPheSerTyrSe : 256 | !!:! 161 bp :!::!!||| !|||||||| eLysSer++ ++LeuValLysThrSerTyrSe 3161150 : TAAAAGTgt.........................agTTGGTGAAAACTTCCTATTC : 3161337 257 : rAlaPheAsnIleLeu : 261 |!.!||||||:!!:!! rValPheAsnValIle 3161338 : GGTATTCAACGTAATC : 3161354 vulgar: NvOr108PSE 127 261 . KQ414646.1 3160720 3161354 + 130 M 40 120 G 1 0 M 39 117 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 41 123 5 0 2 I 0 157 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160721 3161354 130 + . gene_id 6 ; sequence NvOr108PSE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3160721 3160959 . + . KQ414646.1 exonerate:protein2genome:local exon 3160721 3160959 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3160960 3160961 . + . intron_id 1 ; splice_site "tt" KQ414646.1 exonerate:protein2genome:local intron 3160960 3161033 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3161032 3161033 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3161034 3161157 . + . KQ414646.1 exonerate:protein2genome:local exon 3161034 3161157 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3161158 3161159 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3161158 3161318 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3161317 3161318 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3161319 3161354 . + . KQ414646.1 exonerate:protein2genome:local exon 3161319 3161354 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160721 3161354 130 + . alignment_id 6 ; Query NvOr108PSE ; Align 3160721 128 120 ; Align 3160841 169 117 ; Align 3161035 209 123 ; Align 3161319 250 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr108PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 133 -> 196 Target range: 3150616 -> 3150805 134 : LeuSerGluThrPheIleGlnValLeuValIleGlnPheCysAlaSerLeuThrVa : 152 :!!..!|||! !|||! ! !:!!:!!! !:!:|||.!!! :!!||| ! !|| MetGlnGluLysPheArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuVa 3150617 : ATGCAAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGGT : 3150671 153 : lPheCysThrSerIleTyrMetLeuThrLysIleLysValAsnThrLeuAspPheL : 171 | ! ||| !! !:!:||| |||.!!!!.! !! !!:!! ! ! !:!| lValCysPheIleLeuTyrGluLeuAlaAsnThrProProIleSerSerLysTyrL 3150672 : AGTGTGTTTCATCCTGTACGAATTGGCGAACACGCCTCCAATCAGCTCCAAGTACC : 3150728 172 : euLeuMetThrThrTyrLeuIleCysMetLeuAsnGlnIleLeuLeuTyrCysTrp : 189 ||! !.!...! !|||||| !||||||:!!!..||||||!!!!!!||||||||| euGlnPheValLeuTyrLeuAlaCysMetMetThrGlnIlePhePheTyrCysTrp 3150729 : TGCAATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATCTTCTTTTACTGCTGG : 3150782 190 : TyrGlyAsnGluValMetLeu : 196 ||||||.!.:!!:!!! ||| TyrGlyGluGlnLeuLysLeu 3150783 : TACGGCGAGCAGTTGAAACTG : 3150805 vulgar: NvOr108PSE 133 196 . KQ414646.1 3150616 3150805 + 114 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150617 3150805 114 + . gene_id 7 ; sequence NvOr108PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150617 3150805 . + . KQ414646.1 exonerate:protein2genome:local exon 3150617 3150805 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150617 3150805 114 + . alignment_id 7 ; Query NvOr108PSE ; Align 3150617 134 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr108PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 128 -> 194 Target range: 3180460 -> 3180658 129 : LysPheSerLysLeuLeuSerGluThrPheIleGlnValLeuValIleGlnPheCy : 147 !..!!.:!!:!!:!!:!!!:!!!:!:!.!. ! !..!:!! !! !||||||! SerLeuAlaGluIleMetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePh 3180461 : AGTTTAGCTGAAATAATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTT : 3180515 148 : sAlaSerLeuThrValPheCysThrSerIleTyrMetLeuThrLysIleLysValA : 166 !!.!|||!!!! !|||.!!||| !|||:!: !..!||| !!!. ! ! :!! eGlySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleL 3180516 : CGGAAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTC : 3180572 167 : snThrLeuAspPheLeuLeuMetThrThrTyrLeuIleCysMetLeuAsnGlnIle : 184 !!:! !!!:|||||| !! !! |||||| :::||| |||! ! euSerThrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSer 3180573 : TCAGCACCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGC : 3180626 185 : LeuLeuTyrCysTrpTyrGlyAsnGluVal : 194 !!!||||||||||||||||||||||||||| PheLeuTyrCysTrpTyrGlyAsnGluVal 3180627 : TTTCTTTACTGTTGGTACGGAAACGAAGTG : 3180658 vulgar: NvOr108PSE 128 194 . KQ414646.1 3180460 3180658 + 114 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180461 3180658 114 + . gene_id 8 ; sequence NvOr108PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180461 3180658 . + . KQ414646.1 exonerate:protein2genome:local exon 3180461 3180658 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180461 3180658 114 + . alignment_id 8 ; Query NvOr108PSE ; Align 3180461 129 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr108PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 129 -> 193 Target range: 3153456 -> 3153645 130 : PheSerLysLeuLeuSerGluThrPheIleGlnValLeuValIleGlnPheCysAl : 148 !!.:!!:!!:!!:!!!:!|||! !.!! !.!.|||! ! !|||||||||... LeuAlaGlnIleValAsnGluLysLeuGlyAsnValSerSerIleGlnPheAlaIl 3153457 : TTGGCGCAAATAGTGAACGAGAAGCTTGGAAATGTCTCGAGTATACAGTTCGCGAT : 3153511 149 : aSerLeuThrValPheCysThrSerIleTyrMetLeuThrLysIleLysValAsnT : 167 !||| ! !!.!.!.||| !!:!:!!||| :!!:!! !|||:!!:!!..! eSerThrGlyAlaIleCysPheAsnLeuTyrArgMetSerValIleGluLeuGlyP 3153512 : AAGCACAGGAGCGATATGCTTCAATCTCTATCGAATGTCGGTGATAGAACTCGGTC : 3153568 168 : hrLeuAspPheLeuLeuMetThrThrTyrLeuIleCysMetLeuAsnGlnIleLeu : 185 !! ! |||:!! ! ! !||| ! !:!!|||:!:||| ||||||!!! ro---LysPheValGluAlaLeuThrIleThrValCysLeuLeuAlaGlnIlePhe 3153569 : CA---AAGTTTGTGGAAGCGTTAACTATCACAGTATGCTTACTCGCGCAGATATTT : 3153619 186 : LeuTyrCysTrpTyrGlyAsnGlu : 193 ! !||||||||||||||||||::: TyrTyrCysTrpTyrGlyAsnAsp 3153620 : TACTATTGTTGGTAcggtaacgat : 3153645 vulgar: NvOr108PSE 129 193 . KQ414646.1 3153456 3153645 + 101 M 38 114 G 1 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153457 3153645 101 + . gene_id 9 ; sequence NvOr108PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153457 3153645 . + . KQ414646.1 exonerate:protein2genome:local exon 3153457 3153645 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3153457 3153645 101 + . alignment_id 9 ; Query NvOr108PSE ; Align 3153457 130 114 ; Align 3153571 169 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr102 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 328 -> 391 Target range: 1948618 -> 1948429 329 : SerLeuGlnValIleAsnAlaValTyrGluMetAspTrpThrAsnPheHisValSe : 347 ||||||:!!:!! !||| !:!!!:!.!.:!:||||||||| ||| !! !:! SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 1948618 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 1948564 348 : rThrLysArgLeuLeuIlePheIleMetLeuArgAlaSerLysProLeuLysPheS : 366 !||||||||| !:!!:!! !!!:|||:!!|||||||||..!|||:!!:!!.!!! aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 1948563 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 1948507 367 : erValAlaTyrIleIleProMetAsnLeuAspSerPheIleLysIleIleLysAla : 384 ! !!.! !:!::!! !!:!!|||||||||||||||:!! :!!! !! leSerValArgValLeuSerValAsnLeuAspSerPheValAlaValSerIleAsp 1948506 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTGTCAGTATtgat : 1948453 385 : SerTyrThrAlaPheAsnLeu : 391 ...||| |||::: LysTyrGlnLysThrAsnIle 1948452 : aaatatcaaaaaactaatatt : 1948430 vulgar: NvOr102 328 391 . KQ414661.1 1948618 1948429 - 127 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948430 1948618 127 - . gene_id 1 ; sequence NvOr102 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1948430 1948618 . - . KQ414661.1 exonerate:protein2genome:local exon 1948430 1948618 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948430 1948618 127 - . alignment_id 1 ; Query NvOr102 ; Align 1948619 329 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr101 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 169 -> 226 Target range: 1946810 -> 1946639 170 : GlyTrpTyrProTyrAspIleGluAsnSerValLeuPheGlyIleThrTyrValHi : 188 !.!||| ||||||||| !... !:!! !:!!||| !:!!|||!:!||||| AlaTrpIleProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHi 1946810 : GCATGGATACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCA : 1946756 189 : sGlnValIleLeuGlySerPheValIleCysAlaHisValGlyIleAspThrLeuP : 207 ||||!.!||| !!.!!!!.!. ! ! !:!! !||| !:!:|||:!!|||! sGlnAlaIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuT 1946755 : TCAAGCTATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTAT : 1946699 208 : heValGlyLeuLeuLeuLysLeuLeuGlyGlnIleAsnIleLeuLysHisArgLeu : 225 :!..!|||||||||:!!!!.:!!! ! !!|||.!!.!.||||||:!!||||||||| yrThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeu 1946698 : ACACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTA : 1946645 226 : Gln : 226 ::! Arg 1946644 : AGG : 1946640 vulgar: NvOr101 169 226 . KQ414661.1 1946810 1946639 - 123 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946640 1946810 123 - . gene_id 1 ; sequence NvOr101 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946640 1946810 . - . KQ414661.1 exonerate:protein2genome:local exon 1946640 1946810 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1946640 1946810 123 - . alignment_id 1 ; Query NvOr101 ; Align 1946811 170 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr97CTE Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 258 -> 316 Target range: 1946230 -> 1946056 259 : LysThrPheAsnIleIleIleLeuValGlnPheCysValSerSerValValIleTh : 277 :!! !|||!!.:!:|||:!::!! !|||||||||:!!|||! ! !|||||| GluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSerValIleCy 1946230 : GAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTCGGTGATCTG : 1946176 278 : rIleSerValTyrGlnMetSerIleLysSerLeuGlyLeuGluTrpPheMetValP : 296 !.!!!:!:!!|||!:!|||!!! ! !.!:!!! :::::: :::. sPheAsnLeuTyrArgMetThrGlnIleLysMetAspThrLysPheValGluIleI 1946175 : CTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacgaaattcgtcgaaatca : 1946119 297 : heGlyTyrAlaValSerMetLeuThrGluPhePheLeuTyrCysTrpPheGlyAsn : 314 !. !|||:!! !!!!!! :!!|||:!!.!.|||! !|||||||||!:!|||||| leLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCysTrpTyrGlyAsn 1946118 : TACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGCTGGTACGGCAAC : 1946065 315 : GluVal : 316 |||||| GluVal 1946064 : GAAGTG : 1946057 vulgar: NvOr97CTE 258 316 . KQ414661.1 1946230 1946056 - 123 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946057 1946230 123 - . gene_id 1 ; sequence NvOr97CTE ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946057 1946230 . - . KQ414661.1 exonerate:protein2genome:local exon 1946057 1946230 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1946057 1946230 123 - . alignment_id 1 ; Query NvOr97CTE ; Align 1946231 259 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr97CTE Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 143 -> 216 Target range: 1946849 -> 1946633 144 : LeuLeuGlnSerLysGluHisArgAsnLeuProPheLysThrTrpLeuProTyrAs : 162 |||||| !..! ...:!!|||!!.||| !|||::!.!!|||:!!|||||||| LeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrAs 1946849 : CTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACGA : 1946795 163 : pThrArgSerAsnSerLeuAsnTyrTrpLeuSerTyrLeuHisGlnGlyLeuGlyL : 181 | !||| !:!!! !! !!:! |||!!!!:!:!!||||||!.!:!!!.! p---TyrSerProAlaProIlePheIleLeuThrPheValHisGlnAlaIleAlaA 1946794 : T---TACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCG : 1946741 182 : euAlaCysCysGlyThrMetGlyValMetIleValAsnIleIleThrGlyPheMet : 199 !.!! ||| !!||| !.!!|||! :!:! !::!:!! !||||||!!.:!! laThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLeu 1946740 : CGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTG : 1946687 200 : GlnGlnAlaCysAlaGlnPheGluIleLeuAspSerArgTrpArgAsnLeu : 216 .!. !! !..!|||||||||||||||!!: !||| ||||||:!! IleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnVal 1946686 : ATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTT : 1946634 vulgar: NvOr97CTE 143 216 . KQ414661.1 1946849 1946633 - 112 M 19 57 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946634 1946849 112 - . gene_id 2 ; sequence NvOr97CTE ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946634 1946849 . - . KQ414661.1 exonerate:protein2genome:local exon 1946634 1946849 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946634 1946849 112 - . alignment_id 2 ; Query NvOr97CTE ; Align 1946850 144 57 ; Align 1946793 164 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr103 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 327 -> 392 Target range: 1948618 -> 1948287 328 : SerIleAspValAlaAsnThrAlaTyrThrThrAsnTrpLeuSerLeuAsnIleSe : 346 |||:!!!!::!!:!!|||! ! !!:! ! !:!!||| ! !!!!!:!!! !:! SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 1948618 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 1948564 347 : rSerLysLysLysLeuLeuThrIleMetValArgAlaThrArgSerIleGln<->P : 364 !!!!|||::!!!.:!!||||||!!:|||:!!||||||:!! ! !!|||:!! . aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 1948563 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 1948507 365 : heAlaAlaGlyThrPheIleMetAsnIleAspSerPheIleGlu >>>> Targe : 379 !!::!!.! !!..!.!! !:!!|||:!!|||||||||:!!! leSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 1948506 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.......... : 1948460 380 : t Intron 1 >>>> IleIleLysThrSerTyrSerAlaTyrArgValLeuGln : 391 133 bp :!::!:|||||||||||||||||||||!.!||||||||| ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGln 1948459 : ...............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAA : 1948293 392 : Lys : 392 ::: Arg 1948292 : CGC : 1948288 vulgar: NvOr103 327 392 . KQ414661.1 1948618 1948287 - 103 M 36 108 G 0 3 M 15 45 5 0 2 I 0 129 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948288 1948618 103 - . gene_id 1 ; sequence NvOr103 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1948463 1948618 . - . KQ414661.1 exonerate:protein2genome:local exon 1948463 1948618 . - . insertions 3 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1948461 1948462 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1948330 1948462 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1948330 1948331 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1948288 1948329 . - . KQ414661.1 exonerate:protein2genome:local exon 1948288 1948329 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948288 1948618 103 - . alignment_id 1 ; Query NvOr103 ; Align 1948619 328 108 ; Align 1948508 364 45 ; Align 1948330 379 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr103 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 257 -> 324 Target range: 1946251 -> 1946056 258 : ArgLeuGlyAsnTyrLeuAsnGlnGluPheArgGlyIleLeuAlaGlyGlnValMe : 276 |||!!!..!!!. ! :!!|||:!!||||||!:! !|||||| !..!||| !! ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 1946251 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 1946197 277 : tIleThrIleProAsnIleCysIleAsnValTyrLeuLeuSerGlnHisArgGlyG : 295 |||!:!!!: !! ||||||.!!|||:!!|||! !:!!!!!||| !!:! sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---- 1946196 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---- : 1946143 296 : lyIleThrLeuHisLeuValAspSerPheLeuCysPheThrThrCysLeuMetGln : 313 !!: ...|||::: .!.|||! !! ! ! ! !:!!! !||| --MetAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGln 1946142 : --ATGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAG : 1946092 314 : IlePheLeuTyrCysTrpTyrGlyAsnLysIle : 324 ||||||! !||||||||||||||||||:!!:!: IlePheTyrTyrCysTrpTyrGlyAsnGluVal 1946091 : ATATTTTACTATTGCTGGTACGGCAACGAAGTG : 1946057 vulgar: NvOr103 257 324 . KQ414661.1 1946251 1946056 - 102 M 36 108 G 2 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946057 1946251 102 - . gene_id 2 ; sequence NvOr103 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946057 1946251 . - . KQ414661.1 exonerate:protein2genome:local exon 1946057 1946251 . - . insertions 0 ; deletions 2 KQ414661.1 exonerate:protein2genome:local similarity 1946057 1946251 102 - . alignment_id 2 ; Query NvOr103 ; Align 1946252 258 108 ; Align 1946144 296 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr106 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 259 -> 335 Target range: 1946254 -> 1946029 260 : CysGluGlyIleLysGluLeuAsnAspThrPheTyrGluThrIlePheIleGlnPh : 278 |||..! ! |||:!!:!!|||!!: !||| ! !! !:!:.!! !||||| CysArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPh 1946254 : TGCAGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATT : 1946200 279 : eValThrSerIleSerValLeuCysThrAsnIleTyrLeuLeuSerMetGlnAspL : 297 | !! !|||!!:||||||:!!||| !|||:!!|||! !:!!!!! ||| ! eCysIleSerMetSerValIleCysPheAsnLeuTyrArgMetThr---GlnIleL 1946199 : CTGCATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACA---CAGATCA : 1946146 298 : euPheSerAlaGluPheIleAlaValPheValTyrLeuCysCysAlaPheValGln : 315 !.!.......:::|||::: :::.!.:!!|||! !! !|||.!!.!!..!||| ysMetAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGln 1946145 : AAATGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAG : 1946092 316 : AsnPhePheTyrCysTrpTyrGlyTyrLysValSerValAsnThrLeuHisIleSe : 334 ! |||!:!||||||||||||||| !!:!!|||!.!! !!!...! !||| ! IlePheTyrTyrCysTrpTyrGlyAsnGluValLysAspLysValAspHisCysHi 1946091 : ATATTTTACTATTGCTGGTACGGCAACGAAGTGAAAGATAAGGTTGATCATTGTca : 1946035 335 : rAsp : 335 ||| sAsp 1946034 : cgat : 1946030 vulgar: NvOr106 259 335 . KQ414661.1 1946254 1946029 - 131 M 34 102 G 1 0 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946030 1946254 131 - . gene_id 1 ; sequence NvOr106 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946030 1946254 . - . KQ414661.1 exonerate:protein2genome:local exon 1946030 1946254 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946030 1946254 131 - . alignment_id 1 ; Query NvOr106 ; Align 1946255 260 102 ; Align 1946153 295 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr95PSE Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 120 -> 185 Target range: 1946801 -> 1946606 121 : ProTyrAspLeuSerSerProValValTyrZedLeuSerPheLeuHisGlnSerIl : 139 |||||||||! !||| !! !! !:!!!:! |||!!!|||:!!||||||:!!|| ProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAlaIl 1946801 : CCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGCTAT : 1946747 140 : eAlaAlaIleLeuLeuAlaAlaIleGlyIleIleAsnAspAlaLeuIleAlaGlyP : 158 |||||||! :!!! !..!.!! .!!:!!! ! |||:!!||| !.!!|||! eAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyL 1946746 : AGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCT : 1946690 159 : heMetLeuGlnValSerAspGlnLeuGluIleSerAlaHisArgIleGlnGluMet : 176 !.:!!:!!.!.:!!! ! !|||!!!|||||| !! !||||||:!!::!.!.:!: euLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArgAsnVal 1946689 : TGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGGAACGTT : 1946636 177 : ProAsnTyrValThrGluAlaLeuLys : 185 !!.! ! ! !!!::!!:!!||| LysThrGluGlnAspAspSerValLys 1946635 : AAAACTGAGCAGGATGACTCTGTGAAG : 1946607 vulgar: NvOr95PSE 120 185 . KQ414661.1 1946801 1946606 - 106 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946607 1946801 106 - . gene_id 1 ; sequence NvOr95PSE ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946607 1946801 . - . KQ414661.1 exonerate:protein2genome:local exon 1946607 1946801 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1946607 1946801 106 - . alignment_id 1 ; Query NvOr95PSE ; Align 1946802 121 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr108PSE Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 162 Query range: 128 -> 194 Target range: 1946251 -> 1946056 129 : LysPheSerLysLeuLeuSerGluThrPheIleGlnValLeuValIleGlnPheCy : 147 !:!||||||||| !:!!!:!||| !|||! !! !:!!|||:!! !|||||||| ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 1946251 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 1946197 148 : sAlaSerLeuThrValPheCysThrSerIleTyrMetLeuThrLysIleLysValA : 166 | !|||:!!:!!|||.!!||| !!:!:!!||| :!!|||:!!||||||:!!: sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetA 1946196 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGG : 1946140 167 : snThrLeuAspPheLeuLeuMetThrThrTyrLeuIleCysMetLeuAsnGlnIle : 184 !:||| |||::: ::: ! !|||! !.!!|||! :!!!..|||||| spThr---LysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 1946139 : Acacg---aaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 1946089 185 : LeuLeuTyrCysTrpTyrGlyAsnGluVal : 194 !!!! !|||||||||||||||||||||||| PheTyrTyrCysTrpTyrGlyAsnGluVal 1946088 : TTTTACTATTGCTGGTACGGCAACGAAGTG : 1946057 vulgar: NvOr108PSE 128 194 . KQ414661.1 1946251 1946056 - 162 M 39 117 G 1 0 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946057 1946251 162 - . gene_id 1 ; sequence NvOr108PSE ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946057 1946251 . - . KQ414661.1 exonerate:protein2genome:local exon 1946057 1946251 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946057 1946251 162 - . alignment_id 1 ; Query NvOr108PSE ; Align 1946252 129 117 ; Align 1946135 169 78 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr108PSE Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 197 -> 261 Target range: 1948618 -> 1948293 198 : SerGlnLysLeuValGlnSerIleTyrAsnAlaAspTrpIleAlaLeuHisGlyLy : 216 |||! :!!:!! !.!.! !|||!:!:!! !||||||! ! !!!!! !! ! SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 1948618 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 1948564 217 : sThrGlnLysThrLeuLeuLeuMetMetLeuValAlaSerSerProIleGlnLeuP : 235 |||:!!::!!.!:!!||| !||||||:!! !|||||||||||||||:!!:!!. aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 1948563 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 1948507 236 : heGluGlyAlaIleIleLysValAsnLeuAspAlaPheLeuAsn >>>> Targe : 250 !!...! ! !:!::!!...||||||||||||:!!|||:!! ! leSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 1948506 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.......... : 1948460 251 : t Intron 1 >>>> IleLeuLysPheSerTyrSerAlaPheAsnIleLeu : 261 133 bp :!:|||||| !||||||||||||!:!|||:!!||| ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeu 1948459 : ...............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTC : 1948294 vulgar: NvOr108PSE 197 261 . KQ414661.1 1948618 1948293 - 117 M 52 156 5 0 2 I 0 129 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948294 1948618 117 - . gene_id 2 ; sequence NvOr108PSE ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1948463 1948618 . - . KQ414661.1 exonerate:protein2genome:local exon 1948463 1948618 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1948461 1948462 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1948330 1948462 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1948330 1948331 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1948294 1948329 . - . KQ414661.1 exonerate:protein2genome:local exon 1948294 1948329 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948294 1948618 117 - . alignment_id 2 ; Query NvOr108PSE ; Align 1948619 198 156 ; Align 1948330 250 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr98 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 257 -> 323 Target range: 1946251 -> 1946056 258 : GluPheAlaLysIleLeuAsnAspSerLeuAsnValMetLeuPheGlyGlnIleAl : 276 ..!|||:!!|||! :!!|||!!:..!!!!!!.:!!!!:|||.!!..!|||.!!.. ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 1946251 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 1946197 277 : aValThrIleProAsnLeuCysLeuSerIleTyrLeuLeuSerThrGlnLysIleA : 295 !:!!!:!!!: !! :!!|||!!!!:!:!!|||! !:!! ||||||! ! ! sIleSerMetSerValIleCysPheAsnLeuTyrArgMet---ThrGlnIleLysM 1946196 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATG---ACACAGATCAAAA : 1946143 296 : laSerMetAspPheMetMetThrThrGlnPhePheSerAlaValValIleGluLeu : 313 !... |||::: !! !:!! !! !..!..!:!!! :!!:!! etAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 1946142 : TGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 1946089 314 : PhePhePheCysTrpTyrGlyAsnGluVal : 323 |||!:!!:!||||||||||||||||||||| PheTyrTyrCysTrpTyrGlyAsnGluVal 1946088 : TTTTACTATTGCTGGTACGGCAACGAAGTG : 1946057 vulgar: NvOr98 257 323 . KQ414661.1 1946251 1946056 - 100 M 32 96 G 1 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946057 1946251 100 - . gene_id 1 ; sequence NvOr98 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946057 1946251 . - . KQ414661.1 exonerate:protein2genome:local exon 1946057 1946251 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946057 1946251 100 - . alignment_id 1 ; Query NvOr98 ; Align 1946252 258 96 ; Align 1946156 291 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr94 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 250 -> 316 Target range: 1946251 -> 1946056 251 : ArgPheThrGluIleIleAsnSerIlePheAlaProValIleLeuValGlnPheCy : 269 ||||||:!!:!!! :!:|||..! !||| !! !:!!:!::!! !|||||||| ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 1946251 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 1946197 270 : sLeuSerSerGlyValLeuCysIleThrValTyrGlnMetSerAlaSerLysSerA : 288 |:!!|||! !..!|||:!!|||.!!!.!:!!|||!:!|||!!! !! !|||! !: sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetA 1946196 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGG : 1946140 289 : snGlyLeuLysValIleValLeuSerLeuTyrLeuValSerMetLeuValGluPhe : 306 !: ||| ::: ::: !||||||! ! !!!!!! :!!..!:!!.!. sp---ThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 1946139 : Ac---acgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 1946089 307 : PheLeuTyrCysTrpPheGlyAsnGluVal : 316 |||! !|||||||||!:!|||||||||||| PheTyrTyrCysTrpTyrGlyAsnGluVal 1946088 : TTTTACTATTGCTGGTACGGCAACGAAGTG : 1946057 vulgar: NvOr94 250 316 . KQ414661.1 1946251 1946056 - 132 M 38 114 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946057 1946251 132 - . gene_id 1 ; sequence NvOr94 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946057 1946251 . - . KQ414661.1 exonerate:protein2genome:local exon 1946057 1946251 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946057 1946251 132 - . alignment_id 1 ; Query NvOr94 ; Align 1946252 251 114 ; Align 1946138 290 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr100 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 259 -> 326 Target range: 1946251 -> 1946056 260 : GluPheSerLysValLeuAsnAsnLysPheGlnAlaValLeuLeuIleGlnValIl : 278 ..!||||||||| !:!!|||.!.:!!|||:!! !:!!|||:!! !||| !! ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 1946251 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 1946197 279 : eThrSerIleProAsnLeuCysIleAsnValTyrThrLeuSerLysTyrSerGlyI : 297 !! !|||!!: !! :!!|||.!!|||:!!||| !:!!!!!:!! !!.! sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---- 1946196 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---- : 1946143 298 : leIleAsnMetAspTyrIleSerIlePhePheAsnThrThrSerSerLeuIleGln : 315 !!::!: ::::::...|||.!..!! !!:!! !!!!!!!:!!! ||| --MetAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGln 1946142 : --ATGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAG : 1946092 316 : LeuPheIleThrCysTrpTyrGlyAsnGluVal : 326 :!!||| ! !||||||||||||||||||||| IlePheTyrTyrCysTrpTyrGlyAsnGluVal 1946091 : ATATTTTACTATTGCTGGTACGGCAACGAAGTG : 1946057 vulgar: NvOr100 259 326 . KQ414661.1 1946251 1946056 - 104 M 36 108 G 2 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946057 1946251 104 - . gene_id 1 ; sequence NvOr100 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946057 1946251 . - . KQ414661.1 exonerate:protein2genome:local exon 1946057 1946251 . - . insertions 0 ; deletions 2 KQ414661.1 exonerate:protein2genome:local similarity 1946057 1946251 104 - . alignment_id 1 ; Query NvOr100 ; Align 1946252 260 108 ; Align 1946144 298 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr107 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 136 Query range: 259 -> 325 Target range: 1946251 -> 1946056 260 : LysPheAlaGluGlnLeuSerGluThrPheIleGluThrIlePheIleGlnPheCy : 278 !:!|||:!!:!!:!!:!!!:!||| !|||! ! !! !:!:.!! !|||||||| ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 1946251 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 1946197 279 : sAlaGlyLeuSerValIleCysThrSerValTyrValLeuThrThrLeuAsnIleP : 297 | !.!!:!!|||||||||||| !!:!:!!||| !:!!||| !:!!!!.!!: sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMet- 1946196 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATG- : 1946140 298 : heSerPheGluPhePheGlyMetPheLeuTyrLeuTrpCysMetLeuGlyGlnMet : 315 ... :::||| :::.!.||||||! !!::|||! :!! !|||!!: --AspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 1946139 : --GAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 1946089 316 : PheLeuTyrCysTrpPheGlyAsnGluVal : 325 |||! !|||||||||!:!|||||||||||| PheTyrTyrCysTrpTyrGlyAsnGluVal 1946088 : TTTTACTATTGCTGGTACGGCAACGAAGTG : 1946057 vulgar: NvOr107 259 325 . KQ414661.1 1946251 1946056 - 136 M 37 111 G 1 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946057 1946251 136 - . gene_id 1 ; sequence NvOr107 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946057 1946251 . - . KQ414661.1 exonerate:protein2genome:local exon 1946057 1946251 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946057 1946251 136 - . alignment_id 1 ; Query NvOr107 ; Align 1946252 260 111 ; Align 1946141 298 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr107 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 328 -> 392 Target range: 1948618 -> 1948293 329 : SerSerLysLeuPheHisSerIleTyrAsnMetAspTrpIleLysLeuGlnSerGl : 347 ||| !:!!:!!! !:!!! !|||!:!:!!:!:||||||! ! !!!!.!.!.! SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 1948618 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 1948564 348 : nThrGlnThrLysLeuLeuPheMetMetLeuValAlaSerSerProIleGlnLeuP : 366 |||:!! !!!.:!!||| !||||||:!! !|||||||||||||||:!!:!!. aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 1948563 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 1948507 367 : heArgGlyAlaIleIleArgValAsnLeuAspAlaPheIleAsn >>>> Targe : 381 !!!!!! ! !:!::!! !||||||||||||:!!|||:!! ! leSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 1948506 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.......... : 1948460 382 : t Intron 1 >>>> IleLeuLysPheSerTyrSerAlaPheAsnIleLeu : 392 133 bp :!:|||||| !||||||||||||!:!|||:!!||| ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeu 1948459 : ...............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTC : 1948294 vulgar: NvOr107 328 392 . KQ414661.1 1948618 1948293 - 120 M 52 156 5 0 2 I 0 129 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948294 1948618 120 - . gene_id 2 ; sequence NvOr107 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1948463 1948618 . - . KQ414661.1 exonerate:protein2genome:local exon 1948463 1948618 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1948461 1948462 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1948330 1948462 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1948330 1948331 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1948294 1948329 . - . KQ414661.1 exonerate:protein2genome:local exon 1948294 1948329 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948294 1948618 120 - . alignment_id 2 ; Query NvOr107 ; Align 1948619 329 156 ; Align 1948330 381 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr101 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 189 Query range: 263 -> 395 Target range: 888 -> 424 264 : TyrArgPheGlyGluAspLeuAsnLysIlePheGlnGluMetLeuLeuIleLeuValValSerS : 285 !:!||||||!.!||| !:!!||| !! |||... ! !:!! !! ! ! !!:!! !! PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValT 888 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGA : 825 286 : erLeuProAsnIleCysIleAsnIleTyrAlaLeuSerSerAsnLeuLysAsnIleAsnMetAs : 306 !! ! !!..!!:|||.!!|||:!!!:! !|||!!!..!!.! !!.:!: !! !.! hrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThr------LysValTyrSerGl 824 : CCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACC------AAGGTGTATTCGCA : 768 307 : pTyrIleAlaThrPhePheSerThrThrSerAlaPheIleGlnPhePheIleAlaCysTrpPhe : 327 . !:!!||| !.!. ! !! !..!|||!.!||| !|||.!.||| !..!||||||!:! nValLeuAlaLeuIleProPheMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyr 767 : AGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTAT : 705 328 : GlyAsnGluValSerLeuAsn >>>> Target Intron 1 >>>> SerValGluValAr : 339 |||||||||..!!.!:!!!!. 74 bp |||:!!|||:!! ! GlyAsnGluThrLysValLys++ ++SerLeuGluIleCy 704 : GGAAACGAGACCAAAGTGAAGgt.........................agAGCCTTGAAATTTG : 595 340 : gAsnAlaValTyrAlaMetAspTrpAsnLysLeuAspThrProThrGlnLysLeuLeuIleVal : 360 !:!!.!!|||!:!! !! :!!|||!.. !|||..! ! !|||:!!||| !|||:!:..! sAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThr 594 : CGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACG : 532 361 : ValMetAlaArgSerLeuLysProIleGluPheSerValGlyTyrIleIleProMetAsnValA : 382 :!!||| !||||||||||||||||||||||||!!!! !!.!!:!:!!.!!|||:!:|||:!!! IleMetLeuArgSerLeuLysProIleGluPheThrGlyAlaPheValPheProValAsnLeuG 531 : ATTATGTTACGCTCGTTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTTTCCCGTAAATTTGG : 466 383 : spSerPheLeuLysIleIleLysAlaSerTyrThrAlaPhe : 395 !:|||||| !!..:!! ! ||| ||| luSerPheLysSerValCysIleLysIleTyrIlePhePhe 465 : AGTCTTTTAAAAGTGTTTGTatcaaaatatatatatttttc : 425 vulgar: NvOr101 263 395 . LHQN01050085.1 888 424 - 189 M 36 108 G 2 0 M 33 99 5 0 2 I 0 70 3 0 2 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 425 888 189 - . gene_id 1 ; sequence NvOr101 ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 682 888 . - . LHQN01050085.1 exonerate:protein2genome:local exon 682 888 . - . insertions 0 ; deletions 2 LHQN01050085.1 exonerate:protein2genome:local splice5 680 681 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 608 681 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 608 609 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 425 607 . - . LHQN01050085.1 exonerate:protein2genome:local exon 425 607 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 425 888 189 - . alignment_id 1 ; Query NvOr101 ; Align 889 264 108 ; Align 781 302 99 ; Align 608 335 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr108PSE Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 181 Query range: 127 -> 261 Target range: 888 -> 254 128 : LeuLysPheSerLysLeuLeuSerGluThrPheIleGlnValLeuValIleGlnPheCysAlaS : 149 !!!!:!|||:!!:!!:!!:!!!:!! !! !|||! ! ..!:!!!.!! |||||| !.!! PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValT 888 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGA : 825 150 : erLeuThrValPheCysThrSerIleTyrMetLeuThrLysIleLysValAsnThrLeuAspPh : 170 !! !! !..!.!.||| !!:!:!!!:! ||||||:!!! !|||||| !!:!! .!. ! hrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysValTyrSer---GlnVa 824 : CCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGGTGTATTCG---CAAGT : 765 171 : eLeuLeuMetThrThrTyrLeuIleCysMetLeuAsnGlnIleLeuLeuTyrCysTrpTyrGly : 191 !||| !:!!! ! !!!:!:!!:!! !!:!!!!! ||||||!!!! !! !|||||||||||| lLeuAlaLeuIleProPheMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGly 764 : TTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGA : 702 192 : AsnGluValMetLeuAsn >>>> Target Intron 1 >>>> SerGlnLysLeuValGl : 203 ||||||..!! :!!!!. 74 bp |||! :!!:!! !.! AsnGluThrLysValLys++ ++SerLeuGluIleCysAs 701 : AACGAGACCAAAGTGAAGgt.........................agAGCCTTGAAATTTGCGA : 592 204 : nSerIleTyrAsnAlaAspTrpIleAlaLeuHisGlyLysThrGlnLysThrLeuLeuLeuMet : 224 .!!!:!!!:!.!.::!:!!|||! |||||| ! !!..|||:!!|||||||||||| !!!: pThrValPheGluSerAsnTrpThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThrIle 591 : CACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACGATT : 529 225 : MetLeuValAlaSerSerProIleGlnLeuPheGluGlyAlaIleIleLysValAsnLeuAspA : 246 |||||| !:!!! !!.!||||||:!!!!! !! !.! !:!!.!! |||||||||!!:: MetLeuArgSerLeuLysProIleGluPheThrGlyAlaPheValPheProValAsnLeuGluS 528 : ATGTTACGCTCGTTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTTTCCCGTAAATTTGGAGT : 463 247 : laPheLeuAsn >>>> Target Intron 2 >>>> IleLeuLysPheSerTyrSerAla : 257 !!||| !!:! 161 bp :!::!!||| !|||||||||!.! erPheLysSer++ ++LeuValLysThrSerTyrSerVal 462 : CTTTTAAAAGTgt.........................agTTGGTGAAAACTTCCTATTCGGTA : 269 258 : PheAsnIleLeu : 261 ||||||:!!:!! PheAsnValIle 268 : TTCAACGTAATC : 255 vulgar: NvOr108PSE 127 261 . LHQN01050085.1 888 254 - 181 M 40 120 G 1 0 M 29 87 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 157 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 255 888 181 - . gene_id 1 ; sequence NvOr108PSE ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 682 888 . - . LHQN01050085.1 exonerate:protein2genome:local exon 682 888 . - . insertions 0 ; deletions 1 LHQN01050085.1 exonerate:protein2genome:local splice5 680 681 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 608 681 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 608 609 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 452 607 . - . LHQN01050085.1 exonerate:protein2genome:local exon 452 607 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 450 451 . - . intron_id 2 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 291 451 . - . intron_id 2 LHQN01050085.1 exonerate:protein2genome:local splice3 291 292 . - . intron_id 1 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 255 290 . - . LHQN01050085.1 exonerate:protein2genome:local exon 255 290 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 255 888 181 - . alignment_id 1 ; Query NvOr108PSE ; Align 889 128 120 ; Align 769 169 87 ; Align 608 198 156 ; Align 291 250 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr100 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 223 Query range: 258 -> 396 Target range: 888 -> 245 259 : TyrGluPheSerLysValLeuAsnAsnLysPheGlnAlaValLeuLeuIleGlnValIleThrS : 280 !:!..!|||:!!:!!:!!:!!||| ||||||... !..!:!! !! ||| !!:!:..!! PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValT 888 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGA : 825 281 : erIleProAsnLeuCysIleAsnValTyrThrLeuSerLysTyrSerGlyIleIleAsnMetAs : 301 !!! ! !!..:!!|||.!!|||:!!!:! !|||!!!:!! !!.! :!: !! !.! hrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLys------ValTyrSerGl 824 : CCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAG------GTGTATTCGCA : 768 302 : pTyrIleSerIlePhePheAsnThrThrSerSerLeuIleGlnLeuPheIleThrCysTrpTyr : 322 . !:!!:!!:!:.!. !! !..!||| !!!! !|||:!!||| ! !||||||||| nValLeuAlaLeuIleProPheMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyr 767 : AGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTAT : 705 323 : GlyAsnGluValLeuLeuSer >>>> Target Intron 1 >>>> SerLeuGlnIleLy : 334 |||||||||..! !:!!!.! 74 bp ||||||:!!||| GlyAsnGluThrLysValLys++ ++SerLeuGluIleCy 704 : GGAAACGAGACCAAAGTGAAGgt.........................agAGCCTTGAAATTTG : 595 335 : sLysSerIleTyrGluMetAspTrpThrLysLeuAspValProThrLysLysLeuLeuIleVal : 355 ! !!!:!!!:!|||! :!!|||||| !|||..! ! !||||||||| !|||:!:..! sAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThr 594 : CGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACG : 532 356 : IleMetAlaArgSerLeuArgProIleAlaPheSerValAlaHisValIleProMetAsnIleG : 377 |||||| !|||||||||!:!||||||! !|||!!!! !||| !|||.!!|||:!:|||:!:| IleMetLeuArgSerLeuLysProIleGluPheThrGlyAlaPheValPheProValAsnLeuG 531 : ATTATGTTACGCTCGTTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTTTCCCGTAAATTTGG : 466 378 : luSerPheIleLys >>>> Target Intron 2 >>>> IleIleLysIleSerAsnSer : 388 ||||||||! !!.. 161 bp :!::!:|||! !||| !!||| luSerPheLysSer++ ++LeuValLysThrSerTyrSer 465 : AGTCTTTTAAAAGTgt.........................agTTGGTGAAAACTTCCTATTCG : 272 389 : AlaPheAsnValLeuGlnGlnThr : 396 !.!|||||||||:!!||||||||| ValPheAsnValIleGlnGlnThr 271 : GTATTCAACGTAATCCAGCAAACG : 246 vulgar: NvOr100 258 396 . LHQN01050085.1 888 245 - 223 M 37 111 G 2 0 M 32 96 5 0 2 I 0 70 3 0 2 M 52 156 5 0 2 I 0 157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 246 888 223 - . gene_id 1 ; sequence NvOr100 ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 682 888 . - . LHQN01050085.1 exonerate:protein2genome:local exon 682 888 . - . insertions 0 ; deletions 2 LHQN01050085.1 exonerate:protein2genome:local splice5 680 681 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 608 681 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 608 609 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 452 607 . - . LHQN01050085.1 exonerate:protein2genome:local exon 452 607 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 450 451 . - . intron_id 2 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 291 451 . - . intron_id 2 LHQN01050085.1 exonerate:protein2genome:local splice3 291 292 . - . intron_id 1 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 246 290 . - . LHQN01050085.1 exonerate:protein2genome:local exon 246 290 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 246 888 223 - . alignment_id 1 ; Query NvOr100 ; Align 889 259 111 ; Align 778 298 96 ; Align 608 330 156 ; Align 291 382 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr98 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 256 -> 329 Target range: 888 -> 672 257 : PheGluPheAlaLysIleLeuAsnAspSerLeuAsnValMetLeuPheGlyGlnIleAlaValT : 278 |||..!||||||:!!|||:!!|||! !.!!!!!:!:!!! !:!! ! !|||.!! !|||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValT 888 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGA : 825 279 : hrIleProAsnLeuCysLeuSerIleTyrLeuLeuSerThrGlnLysIleAlaSerMetAspPh : 299 ||! ! !!..:!!|||!!!!:!:!!!:!! !|||!!! ! |||:!: !||| .!. ! hrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysValTyrSer---GlnVa 824 : CCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGGTGTATTCG---CAAGT : 765 300 : eMetMetThrThrGlnPhePheSerAlaValValIleGluLeuPhePhePheCysTrpTyrGly : 320 !:!: !! !! !|||.!. !::!||| !! !:!!:!!|||!:!! !|||||||||||| lLeuAlaLeuIleProPheMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGly 764 : TTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGA : 702 321 : AsnGluValThrLeuAsnSerLeuAsp : 329 ||||||..!! !:!!!!. !! !||| AsnGluThrLysValLysValArgAsp 701 : AACGAGACCAAAGTGAAGGTACGTGAT : 673 vulgar: NvOr98 256 329 . LHQN01050085.1 888 672 - 109 M 40 120 G 1 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 673 888 109 - . gene_id 1 ; sequence NvOr98 ; gene_orientation . LHQN01050085.1 exonerate:protein2genome:local cds 673 888 . - . LHQN01050085.1 exonerate:protein2genome:local exon 673 888 . - . insertions 0 ; deletions 1 LHQN01050085.1 exonerate:protein2genome:local similarity 673 888 109 - . alignment_id 1 ; Query NvOr98 ; Align 889 257 120 ; Align 769 298 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr104PSE Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 157 Query range: 300 -> 379 Target range: 768 -> 457 301 : GlnTyrIleAlaThrPhePheCysThrThrSerAlaPheLeuGluPhePheIleValCysTrpT : 322 ||| !:!!||| !.!. ! !! !..!|||!.!||| !:!!.!.||| ! !||||||| GlnValLeuAlaLeuIleProPheMetValSerValPheAlaGlnIlePheTyrCysCysTrpT 768 : CAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGT : 705 323 : yrGlyAsnAspValSerLeuAsn >>>> Target Intron 1 >>>> SerIleGlnVal : 333 ||||||||!!:..!!.!:!!!!. 74 bp |||:!!:!!:!! yrGlyAsnGluThrLysValLys++ ++SerLeuGluIle 704 : ATGGAAACGAGACCAAAGTGAAGgt.........................agAGCCTTGAAATT : 598 334 : LysAsnAlaIleTyrGluMetAspTrpThrIleCysCysMetPheGlnLeuLysLysPheIleI : 355 :!!.!!:!!!:!|||! :!!|||||| ! !!..! ! !|||! !.!!:!:! CysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSerThrLysLysThrLeuLeuT 597 : TGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGA : 532 356 : leIleMetAlaArgSerLeuLysProIleGlnPheSerValGlySerValLeuProMetAsnLe : 376 |||||| !||||||||||||||||||:!!|||!!!! !!.!! !|||!!!|||:!:||||| hrIleMetLeuArgSerLeuLysProIleGluPheThrGlyAlaPheValPheProValAsnLe 531 : CGATTATGTTACGCTCGTTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTTTCCCGTAAATTT : 469 377 : uAspSerPhe : 379 |!!:|||||| uGluSerPhe 468 : GGAGTCTTTT : 458 vulgar: NvOr104PSE 300 379 . LHQN01050085.1 768 457 - 157 M 29 87 5 0 2 I 0 70 3 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 458 768 157 - . gene_id 1 ; sequence NvOr104PSE ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 682 768 . - . LHQN01050085.1 exonerate:protein2genome:local exon 682 768 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 680 681 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 608 681 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 608 609 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 458 607 . - . LHQN01050085.1 exonerate:protein2genome:local exon 458 607 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 458 768 157 - . alignment_id 1 ; Query NvOr104PSE ; Align 769 301 87 ; Align 608 330 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr103 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 184 Query range: 256 -> 393 Target range: 888 -> 245 257 : PheArgLeuGlyAsnTyrLeuAsnGlnGluPheArgGlyIleLeuAlaGlyGlnValMetIleT : 278 ||||||!!!!.!.!. !:!!||| !:!!|||!!! !! :!!||| !||| !!:!!:!:| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValT 888 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGA : 825 279 : hrIleProAsnIleCysIleAsnValTyrLeuLeuSerGlnHisArgGlyGlyIleThrLeuHi : 299 ||! ! !!..!!:|||.!!|||:!!!:!! !|||!!!||| !!:!! ! ! !:!! hrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysValTyrSerGlnValLe 824 : CCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGGTGTATTCGCAAGTTTT : 762 300 : sLeuValAspSerPheLeuCysPheThrThrCysLeuMetGlnIlePheLeuTyrCysTrpTyr : 320 !:!! !!|||:!! ..!!:! !!! |||||||||! !! !||||||||| uAlaLeuIleProPheMet------ValSerValPheAlaGlnIlePheTyrCysCysTrpTyr 761 : AGCATTGATACCGTTCATG------GTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTAT : 705 321 : GlyAsnLysIleIleLeuLeu >>>> Target Intron 1 >>>> SerIleAspValAl : 332 ||||||:!!! !! !:!! ! 74 bp |||:!!!!::!!.. GlyAsnGluThrLysValLys++ ++SerLeuGluIleCy 704 : GGAAACGAGACCAAAGTGAAGgt.........................agAGCCTTGAAATTTG : 595 333 : aAsnThrAlaTyrThrThrAsnTrpLeuSerLeuAsnIleSerSerLysLysLysLeuLeuThr : 353 !:!!|||!.!!:! !!:!|||||| !:!!|||!:! |||!!!||||||! !||||||||| sAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSerThrLysLysThrLeuLeuThr 594 : CGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAGCACCAAAAAGACACTCCTGACG : 532 354 : IleMetValArgAlaThrArgSerIleGlnPhe<->AlaAlaGlyThrPheIleMetAsnIleA : 374 ||||||:!!|||:!! !!:! !!|||:!!||| !.!||| !..!||| !:!:|||:!:! IleMetLeuArgSerLeuLysProIleGluPheThrGlyAlaPheValPheProValAsnLeuG 531 : ATTATGTTACGCTCGTTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTTTCCCGTAAATTTGG : 466 375 : spSerPheIleGlu >>>> Target Intron 2 >>>> IleIleLysThrSerTyrSer : 385 !:||||||! !... 161 bp :!::!:||||||||||||||| luSerPheLysSer++ ++LeuValLysThrSerTyrSer 465 : AGTCTTTTAAAAGTgt.........................agTTGGTGAAAACTTCCTATTCG : 272 386 : AlaTyrArgValLeuGlnLysThr : 393 !.!!:!!.!|||:!!|||:!!||| ValPheAsnValIleGlnGlnThr 271 : GTATTCAACGTAATCCAGCAAACG : 246 vulgar: NvOr103 256 393 . LHQN01050085.1 888 245 - 184 M 49 147 G 2 0 M 20 60 5 0 2 I 0 70 3 0 2 M 37 111 G 0 3 M 14 42 5 0 2 I 0 157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 246 888 184 - . gene_id 1 ; sequence NvOr103 ; gene_orientation + LHQN01050085.1 exonerate:protein2genome:local cds 682 888 . - . LHQN01050085.1 exonerate:protein2genome:local exon 682 888 . - . insertions 0 ; deletions 2 LHQN01050085.1 exonerate:protein2genome:local splice5 680 681 . - . intron_id 1 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 608 681 . - . intron_id 1 LHQN01050085.1 exonerate:protein2genome:local splice3 608 609 . - . intron_id 0 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 452 607 . - . LHQN01050085.1 exonerate:protein2genome:local exon 452 607 . - . insertions 3 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local splice5 450 451 . - . intron_id 2 ; splice_site "GT" LHQN01050085.1 exonerate:protein2genome:local intron 291 451 . - . intron_id 2 LHQN01050085.1 exonerate:protein2genome:local splice3 291 292 . - . intron_id 1 ; splice_site "AG" LHQN01050085.1 exonerate:protein2genome:local cds 246 290 . - . LHQN01050085.1 exonerate:protein2genome:local exon 246 290 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 246 888 184 - . alignment_id 1 ; Query NvOr103 ; Align 889 257 147 ; Align 742 308 60 ; Align 608 328 111 ; Align 494 365 42 ; Align 291 379 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr94 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 249 -> 319 Target range: 888 -> 681 250 : PheArgPheThrGluIleIleAsnSerIlePheAlaProValIleLeuValGlnPheCysLeuS : 271 |||||||||.!!||||||||||||:!!! |||::! !..!!!: !..!|||||| :!!! PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValT 888 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGA : 825 272 : erSerGlyValLeuCysIleThrValTyrGlnMetSerAlaSerLysSerAsnGlyLeuLysVa : 292 !!!!! !..!:!!|||.!!!.!:!!!:!!:!:!!!!! !!!!||| ! !!..! :!!|| hrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysValTyrSer---GlnVa 824 : CCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGGTGTATTCG---CAAGT : 765 293 : lIleValLeuSerLeuTyrLeuValSerMetLeuValGluPhePheLeuTyrCysTrpPheGly : 313 |:!!!.!|||! !! !!:!:!!||||||:!!!!!!.!:!!.!.|||! !! !||||||!:!||| lLeuAlaLeuIleProPheMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGly 764 : TTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGA : 702 314 : AsnGluValThrLeuLys : 319 ||||||..!! !:!!||| AsnGluThrLysValLys 701 : AACGAGACCAAAGTGAAG : 682 vulgar: NvOr94 249 319 . LHQN01050085.1 888 681 - 120 M 40 120 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 682 888 120 - . gene_id 1 ; sequence NvOr94 ; gene_orientation . LHQN01050085.1 exonerate:protein2genome:local cds 682 888 . - . LHQN01050085.1 exonerate:protein2genome:local exon 682 888 . - . insertions 0 ; deletions 1 LHQN01050085.1 exonerate:protein2genome:local similarity 682 888 120 - . alignment_id 1 ; Query NvOr94 ; Align 889 250 120 ; Align 769 291 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr109PSE Target: KQ414583.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold34, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 30 -> 135 Target range: 619762 -> 620077 31 : LeuTyrAlaTrpTyrProCysAsnMetSerIleSerIleCysTyrTrpSerCysTyrL : 50 :!! ! ||||||||||||! !|||:!:!!!|||||| !..!||| | IleLysAlaTrpTyrProTyrAsnValThrIleSerProAlaTyrGluPheThrIleL 619763 : ATAAAAGCATGGTATCCTTATAATGTAACAATTTCGCCAGCTTAtgaatttactattt : 619820 51 : euHisGlnSerThrGlyPheLeuThrIleGlyValValHisValAlaCysGluThrLe : 69 |||||||| !..!||| !! !... ::: :::|||||| !!:|||!! euHisGlnValValGlyValThrValAsnCysIleAsnAsnValAlaIleAspThrPh 619821 : tacatCAAGTCGTGGGTGTCACTGtaaattgtattaataatGTAGCAATAGATACTTT : 619877 70 : uValThrGlyPheIleLeuGlnIleCysAlaGlnLeuGluValLeuAsnHisArgVal : 88 !:!!||||||||||||:!! !|||..!|||||| !:!!|||!:!:!!!.!:!! eIleThrGlyPheIleIleThrAlaCysCysGlnLeuThrLeuLeuSerTyrAsnIle 619878 : TATAACAGGTTTTATAATAACTGCTTGTTGCCAATTGACACTCTTAAGTTATAACATC : 619934 89 : TrpSerIleAsnPheLysIleGlnAsnLeuAlaLeuArgGluLysAspLysAsnThrI : 108 ! ||||||:!!!:!:!! :!!!!. ! !:!! !..!! ||| ! ! !!:! SerSerIleHisTyrGluAlaGluLysGluPheValAlaArgThrAspAspIleSerA 619935 : TCTTCGATACACTATGAAGCGGAGAAAGAATTTGTTGCTAGGACTGATGATATCAGTG : 619994 109 : lePheLeuTyrGluSerPheLeuThrAsnAlaCysIleThrAspHisAsnSerIleLe : 127 ! ! !! ! ||| ! !||| !! ! ||| ... :: laAspLysSerThrSerLysThrTyrAsnGlnLeuTyrGluAspLeuLysIleCysIl 619995 : CCGATAAATCTACTTCAAAAACTTACAACCAATTGTATgaggatttgaaaatttgcat : 620051 128 : uLysPheAlaGluLeuLeuSerGlu : 135 :::: !::!..!|||:!!|||||| eGluHisSerArgLeuIleSerGlu 620052 : tgaaCATAGTAGACTGATATCCGAg : 620077 vulgar: NvOr109PSE 30 135 . KQ414583.1 619762 620077 + 137 M 105 315 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414583.1 exonerate:protein2genome:local gene 619763 620077 137 + . gene_id 1 ; sequence NvOr109PSE ; gene_orientation . KQ414583.1 exonerate:protein2genome:local cds 619763 620077 . + . KQ414583.1 exonerate:protein2genome:local exon 619763 620077 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local similarity 619763 620077 137 + . alignment_id 1 ; Query NvOr109PSE ; Align 619763 31 315 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr111 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 241 Query range: 257 -> 395 Target range: 3155796 -> 3156416 258 : AspIleLeuLysPheAlaAspLeuLeuSerLysThrPheValGluValValPheIl : 276 |||! !! !!:!|||.!!! !:!!:!!!:!:!! !|||! ! !!.!:!!|||! AspAsnCysArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheTh 3155797 : GATAATTGCAGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCAC : 3155851 277 : eGlnPheCysValGlyPheSerValIleCysSerIleValTyrLeuLeuAlaIleL : 295 !||||||...|||.!! !!.!||||||! !! !:!!|||||||||.!! !! rGlnPheAlaValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlyS 3155852 : TCAATTCGCGGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGAT : 3155908 296 : euSerIleLeuSerPheAspPhePheGlyThrLeuPheTyrLeuGlyGlyMetLeu : 313 !..!:!: ! !!.!! !:! ! ! !! !:!!.!.||| !.!! !!|||||| erAspValThrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeu 3155909 : CAGATGTGACGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTC : 3155962 314 : SerGlnMetPheIleTyrCysTrpTyrGlyAsnGluValValLeuAsn >>>> T : 330 !!!|||!!:|||||||||||||||||||||||||||||| !|||!!. ThrGlnIlePheIleTyrCysTrpTyrGlyAsnGluValLysLeuLys++ 3155963 : ACGCAAATATTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAGgt...... : 3156015 331 : arget Intron 1 >>>> SerThrLysLeuPheHisThrIleTyrAsnMetAs : 341 73 bp ||| !:!!:!!! !:!!! !|||!:!:!!:!::! ++SerLeuGluIleSerAsnMetIlePheHisLeuAs 3156016 : ...................agAGCCTCGAGATTTCTAATATGATTTTTCACCTCGA : 3156119 342 : nTrpValAlaPheGlnIleLysThrGlnLysLysLeuLeuLeuMetMetLeuValA : 360 !|||..! !!|||.!.! ! |||:!!::!!!.:!!||| !||||||:!! !| pTrpThrProPheAspLysAlaThrLysArgAsnIleLeuThrMetMetMetArgA 3156120 : CTGGACACCGTTCGATAAAGCTACAAAACGAAATATACTAACTATGATGATGCGTG : 3156176 361 : laLeuSerProIleGlnLeuPheGluGlyAlaIleIleLysValAsnLeuAspAla : 378 ||! !|||||||||:!!:!!.!!...! ! !:!::!!...||||||||||||:!! laSerSerProIleGluIleIleSerValArgValLeuSerValAsnLeuAspSer 3156177 : CGTCGTCGCCAATTGAAATCATCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCG : 3156230 379 : PheIleAsn >>>> Target Intron 2 >>>> ValLeuLysPheSerTyr : 387 |||:!! ! 133 bp :!!|||||| !|||||| PheValAla++ ++LeuLeuLysThrSerTyr 3156231 : TTCGTCGCTgt.........................agTTGCTGAAAACTTCTTAC : 3156390 388 : SerAlaPheAsnIleLeuGlnLys : 395 ||||||!:!|||:!!||||||::: SerAlaTyrAsnValLeuGlnArg 3156391 : TCGGCGTACAACGTTCTCCAACGC : 3156416 vulgar: NvOr111 257 395 . KQ414646.1 3155796 3156416 + 241 M 72 216 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 129 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155797 3156416 241 + . gene_id 1 ; sequence NvOr111 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3155797 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155797 3156012 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156013 3156014 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156013 3156085 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3156084 3156085 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156086 3156241 . + . KQ414646.1 exonerate:protein2genome:local exon 3156086 3156241 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156242 3156243 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156242 3156374 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3156373 3156374 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156375 3156416 . + . KQ414646.1 exonerate:protein2genome:local exon 3156375 3156416 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155797 3156416 241 + . alignment_id 1 ; Query NvOr111 ; Align 3155797 258 216 ; Align 3156086 330 156 ; Align 3156375 382 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr111 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 258 -> 346 Target range: 3178378 -> 3178642 259 : IleLeuLysPheAlaAspLeuLeuSerLysThrPheValGluValValPheIleGl : 277 ||| :::|||.!!.!. !:!!!:!! ..!||| ! ! :!!:!!|||:!:|| IleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLeuGl 3178379 : atttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCTGCA : 3178433 278 : nPheCysValGlyPheSerValIleCysSerIleValTyrLeuLeuAlaIleLeuS : 296 ||||! !:!!.!!! !!!|||:!:|||! !! !:!!||| !:!!:!!! :!!! nPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrIleA 3178434 : ATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGATTA : 3178490 297 : erIleLeuSerPheAspPhePheGlyThrLeuPheTyrLeuGlyGlyMetLeuSer : 314 :! !!!!|||.!.:!!||| !! !! ! !! !|||||| !! !!||||||!!! snProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeuThr 3178491 : ATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACG : 3178544 315 : GlnMetPheIleTyrCysTrpTyrGlyAsnGluValValLeuAsnSerThrLysLe : 333 |||:!!!:!:!!|||||||||!:!||||||||||||..!|||!!. ! !! :! GlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLysValGlyThrVa 3178545 : CAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAGGTTGGCACCGT : 3178601 334 : uPheHisThrIleTyrAsnMetAsnTrpValAlaPheGln : 346 !|||! ! !:!: ! ! ... ! !||||||||| lPheProArgValArg***HisArgThrLysAlaPheGln 3178602 : GTTTCCTCGAGTGCGTTAGCACCGAACGAAAGCTTTCCaa : 3178642 vulgar: NvOr111 258 346 . KQ414646.1 3178378 3178642 + 148 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178379 3178642 148 + . gene_id 2 ; sequence NvOr111 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178379 3178642 . + . KQ414646.1 exonerate:protein2genome:local exon 3178379 3178642 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178379 3178642 148 + . alignment_id 2 ; Query NvOr111 ; Align 3178379 259 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr111 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 260 -> 326 Target range: 3180460 -> 3180658 261 : LysPheAlaAspLeuLeuSerLysThrPheValGluValValPheIleGlnPheCy : 279 !..!!.|||!!::!!:!!!:! ! !:!.!. ! !..!:!!||| !||||||! SerLeuAlaGluIleMetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePh 3180461 : AGTTTAGCTGAAATAATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTT : 3180515 280 : sValGlyPheSerValIleCysSerIleValTyrLeuLeuAlaIleLeuSerIleL : 298 !! !.!!|||! !||||||||| !! !:!! !! !||| !! ! !..!|||| eGlySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleL 3180516 : CGGAAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTC : 3180572 299 : euSerPheAspPhePheGlyThrLeuPheTyrLeuGlyGlyMetLeuSerGlnMet : 316 ||||| !!!:|||!!.!.!|||:::|||||||||......:::||| !|||! euSerThrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSer 3180573 : TCAGCACCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGC : 3180626 317 : PheIleTyrCysTrpTyrGlyAsnGluVal : 326 |||:!!|||||||||||||||||||||||| PheLeuTyrCysTrpTyrGlyAsnGluVal 3180627 : TTTCTTTACTGTTGGTACGGAAACGAAGTG : 3180658 vulgar: NvOr111 260 326 . KQ414646.1 3180460 3180658 + 145 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180461 3180658 145 + . gene_id 3 ; sequence NvOr111 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180461 3180658 . + . KQ414646.1 exonerate:protein2genome:local exon 3180461 3180658 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180461 3180658 145 + . alignment_id 3 ; Query NvOr111 ; Align 3180461 261 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr111 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 256 -> 326 Target range: 3158440 -> 3158647 257 : IleAspIleLeuLysPheAlaAspLeuLeuSerLysThrPheValGluValValPh : 275 :!:.!.! !! !!:!|||:!! ! !:!!!:!:!! !||| ! !:!!:!!.! LeuGlnThrCysArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIl 3158441 : TTGCAAACTTGCAGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGAT : 3158495 276 : eIleGlnPheCysValGlyPheSerValIleCysSerIleValTyrLeuLeuAlaI : 294 ! !|||||||||:!!.!!.!.||||||||||||! !! !:!!|||! !:!!.!! eSerGlnPheCysIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrG 3158496 : TTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACAC : 3158552 295 : leLeuSerIleLeuSerPheAspPhePheGlyThrLeuPheTyrLeuGlyGlyMet : 312 :!!!.! :!!... ||| :!!.!!|||! ! ! !!! lnIleLys---MetAspThrLysPheValGluIleIleLeuTyrSerPheCysThr 3158553 : AGATCAAA---ATGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACT : 3158603 313 : LeuSerGlnMetPheIleTyrCysTrpTyrGlyAsnGluVal : 326 :!!!!!|||!!:||| !|||||||||||||||||||||||| IleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGluVal 3158604 : ATCACGCAGATATTTTACTATTGTTGGTACGGCAACGAAGTG : 3158647 vulgar: NvOr111 256 326 . KQ414646.1 3158440 3158647 + 109 M 40 120 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158441 3158647 109 + . gene_id 4 ; sequence NvOr111 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158441 3158647 . + . KQ414646.1 exonerate:protein2genome:local exon 3158441 3158647 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3158441 3158647 109 + . alignment_id 4 ; Query NvOr111 ; Align 3158441 257 120 ; Align 3158561 298 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr111 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 256 -> 326 Target range: 3164968 -> 3165175 257 : IleAspIleLeuLysPheAlaAspLeuLeuSerLysThrPheValGluValValPh : 275 :!:.!.! !! !!:!|||:!! ! !:!!!:!:!! !||| ! !:!!:!!.! LeuGlnThrCysArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIl 3164969 : TTGCAAACTTGCAGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGAT : 3165023 276 : eIleGlnPheCysValGlyPheSerValIleCysSerIleValTyrLeuLeuAlaI : 294 ! !|||||||||:!!.!!.!.||||||||||||! !! !:!!|||! !:!!.!! eSerGlnPheCysIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrG 3165024 : TTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACAC : 3165080 295 : leLeuSerIleLeuSerPheAspPhePheGlyThrLeuPheTyrLeuGlyGlyMet : 312 :!!!.! :!!... ||| :!!.!!|||! ! ! !!! lnIleLys---MetAspThrLysPheValGluIleIleLeuTyrSerPheCysThr 3165081 : AGATCAAA---ATGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACT : 3165131 313 : LeuSerGlnMetPheIleTyrCysTrpTyrGlyAsnGluVal : 326 :!!!!!|||!!:||| !|||||||||||||||||||||||| IleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGluVal 3165132 : ATCACGCAGATATTTTACTATTGCTGGTACGGCAACGAAGTG : 3165175 vulgar: NvOr111 256 326 . KQ414646.1 3164968 3165175 + 109 M 40 120 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164969 3165175 109 + . gene_id 5 ; sequence NvOr111 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164969 3165175 . + . KQ414646.1 exonerate:protein2genome:local exon 3164969 3165175 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3164969 3165175 109 + . alignment_id 5 ; Query NvOr111 ; Align 3164969 257 120 ; Align 3165089 298 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr111 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 260 -> 328 Target range: 3150601 -> 3150805 261 : LysPheAlaAspLeuLeuSerLysThrPheValGluValValPheIleGlnPheCy : 279 !:!!:!!.! ! !:!!..!:!!! !||| ! !:!!:!! !:!:|||.!!! ArgTyrValPheThrMetGlnGluLysPheArgTrpIleIleGlyValGlnLeuLe 3150602 : AGGTACGTTTTCACGATGCAAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTT : 3150656 280 : sValGlyPheSerValIleCysSerIleValTyrLeuLeuAlaIleLeuSerIleL : 298 !.!! !|||:!:|||! !|||:!!||| !||||||! ! ! !! !: uSerSerThrLeuValValCysPheIleLeuTyrGluLeuAlaAsnThrProProI 3150657 : ATCGAGCACGCTGGTAGTGTGTTTCATCCTGTACGAATTGGCGAACACGCCTCCAA : 3150713 299 : euSerPheAspPhePheGlyThrLeuPheTyrLeuGlyGlyMetLeuSerGlnMet : 316 !!|||! ! ! !:!.!. ! !:!!.!.||||||!.! !!|||:!!!!!|||!!: leSerSerLysTyrLeuGlnPheValLeuTyrLeuAlaCysMetMetThrGlnIle 3150714 : TCAGCTCCAAGTACCTGCAATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATC : 3150767 317 : PheIleTyrCysTrpTyrGlyAsnGluValValLeu : 328 |||.!!|||||||||||||||.!.:!!:!! !||| PhePheTyrCysTrpTyrGlyGluGlnLeuLysLeu 3150768 : TTCTTTTACTGCTGGTACGGCGAGCAGTTGAAACTG : 3150805 vulgar: NvOr111 260 328 . KQ414646.1 3150601 3150805 + 106 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150602 3150805 106 + . gene_id 6 ; sequence NvOr111 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150602 3150805 . + . KQ414646.1 exonerate:protein2genome:local exon 3150602 3150805 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150602 3150805 106 + . alignment_id 6 ; Query NvOr111 ; Align 3150602 261 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr125 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 240 -> 300 Target range: 3155832 -> 3156012 241 : PheMetThrValIleAlaProLeuPhePhePheSerLeuLeuThrLeuCysAlaSe : 259 ||| !! !!.!||| ! !!! !||| ! ||| !|||.!!:!!||| !!: PheGluMetAlaIlePheThrGlnPheAlaValSerThrLeuAlaIleCysPheAs 3155833 : TTCGAGATGGCGATTTTCACTCAATTCGCGGTGAGTACGCTGGCGATATGCTTCAA : 3155887 260 : rIlePheGlnMetSerGlnAsnAspIleIleSerLeuGluPheLeuGlyPheAlaM : 278 !:!!!:!! !:!:!!! !:::|||:!:! !!:!!..!!:!:!!! !.!. !| nLeuTyrLeuLeuThrGlySerAspValThrProIleArgTyrValGluIleIleM 3155888 : TCTTTACCTATTAACAGGATCAGATGTGACGCCGATTAGGTATGTGGAAATAATCA : 3155944 279 : etTyrLeuSerCysMetLeuCysGlnValPheLeuTyrCysTrpTyrGlyAsnGlu : 296 ||||| !|||||||||||| |||:!!|||:!!||||||||||||||||||||| etTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysTrpTyrGlyAsnGlu 3155945 : TGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTGGTACGGGAACGAA : 3155998 297 : LeuLysLeuLys : 300 :!!||||||||| ValLysLeuLys 3155999 : GTTAAGCTGAAG : 3156012 vulgar: NvOr125 240 300 . KQ414646.1 3155832 3156012 + 150 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155833 3156012 150 + . gene_id 1 ; sequence NvOr125 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155833 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155833 3156012 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155833 3156012 150 + . alignment_id 1 ; Query NvOr125 ; Align 3155833 241 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr125 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 248 -> 300 Target range: 3180511 -> 3180667 249 : PhePhePheSerLeuLeuThrLeuCysAlaSerIlePheGlnMetSerGlnAsnAs : 267 |||||| |||!!!:!!..!:!!||| !|||:!:.!!|||:!!! !.!. || PhePheGlySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAs 3180512 : TTTTTCGGAAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGA : 3180566 268 : pIleIleSerLeuGluPheLeuGlyPheAlaMetTyrLeuSerCysMetLeuCysG : 286 ||||:!!||| !|||||||||!.! ...||||||||| :::||| | pIleLeuSerThrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuG 3180567 : TATTCTCAGCACCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGC : 3180623 287 : lnValPheLeuTyrCysTrpTyrGlyAsnGluLeuLysLeuLys : 300 || !|||||||||||||||||||||||||||:!!!:! !||| lnSerPheLeuTyrCysTrpTyrGlyAsnGluValArgThrLys 3180624 : AGAGCTTTCTTTACTGTTGGTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: NvOr125 248 300 . KQ414646.1 3180511 3180667 + 150 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180512 3180667 150 + . gene_id 2 ; sequence NvOr125 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180512 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180512 3180667 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180512 3180667 150 + . alignment_id 2 ; Query NvOr125 ; Align 3180512 249 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr125 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 227 -> 300 Target range: 3178372 -> 3178591 228 : AsnCysMetAsnAsnLeuValLysLysThrThrAsnLeuPheMetThrValIleAl : 246 ||| ::: ...!!!..!:!!! !..!!.!!.!:!!|||..! !:!!||| AsnPheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePh 3178373 : aatttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTT : 3178427 247 : aProLeuPhePhePheSerLeuLeuThrLeuCysAlaSerIlePheGlnMetSerG : 265 !! !! !|||! !.!!|||! ! !..!|||||| !||||||!:!:!!|||||| eLeuGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerT 3178428 : CCTGCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGA : 3178484 266 : lnAsnAspIleIleSerLeuGluPheLeuGlyPheAlaMetTyrLeuSerCysMet : 283 !! !:!! !.!!|||:!!.!.|||:!! !!! !||| ||||||!!!|||||| hrIleAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMet 3178485 : CGATTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATG : 3178538 284 : LeuCysGlnValPheLeuTyrCysTrpTyrGlyAsnGluLeuLysLeuLys : 300 ||| ||||||!:!||||||||||||!:!|||||||||:!!! !|||||| LeuThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys 3178539 : CTCACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: NvOr125 227 300 . KQ414646.1 3178372 3178591 + 148 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178373 3178591 148 + . gene_id 3 ; sequence NvOr125 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178373 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178373 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178373 3178591 148 + . alignment_id 3 ; Query NvOr125 ; Align 3178373 228 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr125 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 240 -> 300 Target range: 3150628 -> 3150808 241 : PheMetThrValIleAlaProLeuPhePhePheSerLeuLeuThrLeuCysAlaSe : 259 |||! !:!!|||!.! !! !.!!!!.! ||| !|||..!:!!||| !! PheArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuValValCysPheIl 3150629 : TTCAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGGTAGTGTGTTTCAT : 3150683 260 : rIlePheGlnMetSerGlnAsnAspIleIleSerLeuGluPheLeuGlyPheAlaM : 278 !:!:!:!:!!:!!:!!.!.!.. ! !||||||! !:!!!:!||| !|||!.!: eLeuTyrGluLeuAlaAsnThrProProIleSerSerLysTyrLeuGlnPheValL 3150684 : CCTGTACGAATTGGCGAACACGCCTCCAATCAGCTCCAAGTACCTGCAATTTGTCC : 3150740 279 : etTyrLeuSerCysMetLeuCysGlnValPheLeuTyrCysTrpTyrGlyAsnGlu : 296 !!||||||:!!||||||:!! |||:!!|||!!!|||||||||||||||.!.:!! euTyrLeuAlaCysMetMetThrGlnIlePhePheTyrCysTrpTyrGlyGluGln 3150741 : TGTACCTGGCCTGTATGATGACGCAGATCTTCTTTTACTGCTGGTACGGCGAGCAG : 3150794 297 : LeuLysLeuLys : 300 |||||||||||| LeuLysLeuLys 3150795 : TTGAAACTGAAG : 3150808 vulgar: NvOr125 240 300 . KQ414646.1 3150628 3150808 + 144 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150629 3150808 144 + . gene_id 4 ; sequence NvOr125 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150629 3150808 . + . KQ414646.1 exonerate:protein2genome:local exon 3150629 3150808 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150629 3150808 144 + . alignment_id 4 ; Query NvOr125 ; Align 3150629 241 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr125 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 234 -> 300 Target range: 3164989 -> 3165184 235 : LysLysThrThrAsnLeuPheMetThrValIleAlaProLeuPhePhePheSerLe : 253 ||||||..!!.!.!. !|||! !:!!:!: ! !!! !|||! !.!.|||:! LysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMe 3164990 : AAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCAT : 3165044 254 : uLeuThrLeuCysAlaSerIlePheGlnMetSerGlnAsnAspIleIleSerLeuG : 272 !! !..!:!!||| !!:!:!!!:!!:!|||!!!|||! ! ! !!:... : tSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---MetAspThrL 3165045 : GTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---ATGGAcacga : 3165098 273 : luPheLeuGlyPheAlaMetTyrLeuSerCysMetLeuCysGlnValPheLeuTyr : 290 ::|||::: ... !:!:|||! !! !|||! :!! |||:!!|||! !||| ysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyr 3165099 : aattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTAT : 3165152 291 : CysTrpTyrGlyAsnGluLeuLysLeuLys : 300 ||||||||||||||||||:!!|||! !||| CysTrpTyrGlyAsnGluValLysHisLys 3165153 : TGCTGGTACGGCAACGAAGTGAAACATAAG : 3165184 vulgar: NvOr125 234 300 . KQ414646.1 3164989 3165184 + 116 M 33 99 G 1 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164990 3165184 116 + . gene_id 5 ; sequence NvOr125 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164990 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164990 3165184 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3164990 3165184 116 + . alignment_id 5 ; Query NvOr125 ; Align 3164990 235 99 ; Align 3165089 269 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr125 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 234 -> 300 Target range: 3158461 -> 3158656 235 : LysLysThrThrAsnLeuPheMetThrValIleAlaProLeuPhePhePheSerLe : 253 ||||||..!!.!.!. !|||! !:!!:!: ! !!! !|||! !.!.|||:! LysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMe 3158462 : AAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCAT : 3158516 254 : uLeuThrLeuCysAlaSerIlePheGlnMetSerGlnAsnAspIleIleSerLeuG : 272 !! !..!:!!||| !!:!:!!!:!!:!|||!!!|||! ! ! !!:... : tSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---MetAspThrL 3158517 : GTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---ATGGAcacga : 3158570 273 : luPheLeuGlyPheAlaMetTyrLeuSerCysMetLeuCysGlnValPheLeuTyr : 290 ::|||::: ... !:!:|||! !! !|||! :!! |||:!!|||! !||| ysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyr 3158571 : aattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTAT : 3158624 291 : CysTrpTyrGlyAsnGluLeuLysLeuLys : 300 ||||||||||||||||||:!!||| !||| CysTrpTyrGlyAsnGluValLysAspLys 3158625 : TGTTGGTACGGCAACGAAGTGAAAGATAAG : 3158656 vulgar: NvOr125 234 300 . KQ414646.1 3158461 3158656 + 115 M 33 99 G 1 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158462 3158656 115 + . gene_id 6 ; sequence NvOr125 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158462 3158656 . + . KQ414646.1 exonerate:protein2genome:local exon 3158462 3158656 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3158462 3158656 115 + . alignment_id 6 ; Query NvOr125 ; Align 3158462 235 99 ; Align 3158561 269 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr125 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 240 -> 309 Target range: 3160750 -> 3160954 241 : PheMetThrValIleAlaProLeuPhePhePheSerLeuLeuThrLeuCysAlaSe : 259 |||! ! !..!!!:||| !!! !|||.!. ! !!! !:!!|||:!!||| !!: PheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThrMetCysPheAs 3160751 : TTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACAATGTGCTTCAA : 3160805 260 : rIlePheGlnMetSerGlnAsnAspIleIleSerLeuGluPheLeuGlyPheAlaM : 278 !:!!|||!:!:!!!!!|||!.! ! :!: !||| :!! !!|||!.!!!. ! nLeuPheArgLeuThrGlnThrLysValTyrSer---GlnValLeuAlaLeuIleP 3160806 : CCTCTTTCGACTGACACAGACCAAGGTGTATTCG---CAAGTTTTAGCATTGATAC : 3160859 279 : etTyrLeuSerCysMetLeuCysGlnValPheLeuTyrCysTrpTyrGlyAsnGlu : 296 !!:!:!! ! !!:!!!!!...|||:!!|||! !! !|||||||||||||||||| roPheMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnGlu 3160860 : CGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACGAG : 3160913 297 : LeuLysLeuLysSerAlaAspLeuValAsnGluValPhe : 309 !|||:!!||| ! !|||! !..!:!! :::||| ThrLysValLysValArgAspGlnThrAspPheLeuPhe 3160914 : ACCAAAGTGAAGGTACGTGATCAAACAGACTTCttattc : 3160954 vulgar: NvOr125 240 309 . KQ414646.1 3160750 3160954 + 108 M 30 90 G 1 0 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160751 3160954 108 + . gene_id 7 ; sequence NvOr125 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160751 3160954 . + . KQ414646.1 exonerate:protein2genome:local exon 3160751 3160954 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3160751 3160954 108 + . alignment_id 7 ; Query NvOr125 ; Align 3160751 241 90 ; Align 3160841 272 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr125 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 240 -> 309 Target range: 3174961 -> 3175165 241 : PheMetThrValIleAlaProLeuPhePhePheSerLeuLeuThrLeuCysAlaSe : 259 |||! ! !..!!!:||| !!! !|||.!. ! !!! !:!!|||:!!||| !!: PheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThrMetCysPheAs 3174962 : TTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACAATGTGCTTCAA : 3175016 260 : rIlePheGlnMetSerGlnAsnAspIleIleSerLeuGluPheLeuGlyPheAlaM : 278 !:!!|||!:!:!!!!!|||!.! ! :!: !||| :!! !!|||!.!!!. ! nLeuPheArgLeuThrGlnThrLysValTyrSer---GlnValLeuAlaLeuIleP 3175017 : CCTCTTTCGACTGACACAGACCAAGGTGTATTCG---CAAGTTTTAGCATTGATAC : 3175070 279 : etTyrLeuSerCysMetLeuCysGlnValPheLeuTyrCysTrpTyrGlyAsnGlu : 296 !!:!:!! ! !!:!!!!!...|||:!!|||! !! !|||||||||||||||||| roPheMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnGlu 3175071 : CGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACGAG : 3175124 297 : LeuLysLeuLysSerAlaAspLeuValAsnGluValPhe : 309 !|||:!!||| ! !|||! !..!:!! :::||| ThrLysValLysValArgAspGlnThrAspPheLeuPhe 3175125 : ACCAAAGTGAAGGTACGTGATCAAACAGACTTCttattc : 3175165 vulgar: NvOr125 240 309 . KQ414646.1 3174961 3175165 + 108 M 30 90 G 1 0 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174962 3175165 108 + . gene_id 8 ; sequence NvOr125 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174962 3175165 . + . KQ414646.1 exonerate:protein2genome:local exon 3174962 3175165 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3174962 3175165 108 + . alignment_id 8 ; Query NvOr125 ; Align 3174962 241 90 ; Align 3175052 272 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr119 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 292 -> 321 Target range: 3178504 -> 3178591 293 : GluTyrCysPheIleMetSerTyrLeuCysCysLeuLeuValGlnIlePheCysLe : 311 .!.!:! !!:: ! |||||||||||||||:!!|||..!|||:!:!:!! ! AsnPheValTrpCysAlaSerTyrLeuCysCysMetLeuThrGlnValTyrLeuTy 3178505 : AACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACGCAGGTGTATTTATA : 3178559 312 : uCysTrpPheGlyAsnGluLeuGlnLeuLys : 321 !||||||||||||||||||:!! !|||||| rCysTrpPheGlyAsnGluValThrLeuLys 3178560 : CTGTTGGTTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: NvOr119 292 321 . KQ414646.1 3178504 3178591 + 101 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178505 3178591 101 + . gene_id 1 ; sequence NvOr119 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178505 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178505 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178505 3178591 101 + . alignment_id 1 ; Query NvOr119 ; Align 3178505 293 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr118 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 259 -> 323 Target range: 3178399 -> 3178591 260 : IleGlnSerValPheIleSerIleValLeuProIlePheCysSerAlaLeuLeuTh : 278 :!:.!.!!!|||||| ! !!!::!!!!!! ! !|||! !! !::!! ! !.. ValAsnThrValPheGlnTyrMetIlePheLeuGlnPheSerIleSerSerThrVa 3178400 : GTGAACACTGTGTTCCAGTACATGATTTTCCTGCAATTTTCCATCAGTTCGACGGT : 3178454 279 : rLeuCysPheSerThrPheGlnLeuAlaGlnLysAsnGlnThrThrGlyGluTyrC : 297 !||||||!!.|||! !!:!:!!:!!:!! !! |||! ! !!:! !.!.!:! lLeuCysLeuSerIleTyrLysMetSerThrIleAsnProPheSerMetAsnPheV 3178455 : GCTGTGTTTGAGCATCTATAAAATGTCGACGATTAATCCATTTAGCATGAACTTCG : 3178511 298 : ysPheIleIleThrTyrLeuCysCysLeuLeuValGlnIlePheCysLeuCysTrp : 315 !!:: ! !:!!||||||||||||:!!|||..!|||:!:!:!! ! !|||||| alTrpCysAlaSerTyrLeuCysCysMetLeuThrGlnValTyrLeuTyrCysTrp 3178512 : TCTGGTGCGCCTCCTATTTATGCTGTATGCTCACGCAGGTGTATTTATACTGTTGG : 3178565 316 : PheGlyAsnGluLeuGlnPheLys : 323 ||||||||||||:!! !!!.||| PheGlyAsnGluValThrLeuLys 3178566 : TTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: NvOr118 259 323 . KQ414646.1 3178399 3178591 + 122 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178400 3178591 122 + . gene_id 1 ; sequence NvOr118 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178400 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178400 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178400 3178591 122 + . alignment_id 1 ; Query NvOr118 ; Align 3178400 260 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr118 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 259 -> 323 Target range: 3155820 -> 3156012 260 : IleGlnSerValPheIleSerIleValLeuProIlePheCysSerAlaLeuLeuTh : 278 |||.!...! !||| ! ! :!!!!! !! !|||... !::! !|||.! IleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAlaValSerThrLeuAl 3155821 : ATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGTGAGTACGCTGGC : 3155875 279 : rLeuCysPheSerThrPheGlnLeuAlaGlnLysAsnGlnThrThrGlyGluTyrC : 297 !:!!||||||!:! !!:!! !|||.!! !..!:!! !||| !! !..!||| aIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValThrProIleArgTyrV 3155876 : GATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGACGCCGATTAGGTATG : 3155932 298 : ysPheIleIleThrTyrLeuCysCysLeuLeuValGlnIlePheCysLeuCysTrp : 315 ||||||! !||| ! !!|||:!!|||..!||||||||| !! !|||||| alGluIleIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysTrp 3155933 : TGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTGG : 3155986 316 : PheGlyAsnGluLeuGlnPheLys : 323 !:!|||||||||:!!:!!.!.||| TyrGlyAsnGluValLysLeuLys 3155987 : TACGGGAACGAAGTTAAGCTGAAG : 3156012 vulgar: NvOr118 259 323 . KQ414646.1 3155820 3156012 + 118 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155821 3156012 118 + . gene_id 2 ; sequence NvOr118 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155821 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155821 3156012 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155821 3156012 118 + . alignment_id 2 ; Query NvOr118 ; Align 3155821 260 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr118 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 258 -> 323 Target range: 3164992 -> 3165184 259 : ArgIleGlnSerValPheIleSerIleValLeuProIlePheCysSerAlaLeuLe : 277 !:!:!:.!...!! !|||! ! !|||:!!:!! !! !||||||! !::!:!!! LysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSe 3164993 : AAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTC : 3165047 278 : uThrLeuCysPheSerThrPheGlnLeuAlaGlnLysAsnGlnThrThrGlyGluT : 296 !..!:!!||||||!:! !!:!!:!:!!.!!|||! !!...! ||| :::: rValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThr---LysP 3165048 : GGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacg---aaat : 3165101 297 : yrCysPheIleIleThrTyrLeuCysCysLeuLeuValGlnIlePheCysLeuCys : 314 :: |||||| !|||! !! !||| !:!!..!|||||||||! !! !||| heValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCys 3165102 : tcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGC : 3165155 315 : TrpPheGlyAsnGluLeuGlnPheLys : 323 |||!:!|||||||||:!!:!! !||| TrpTyrGlyAsnGluValLysHisLys 3165156 : TGGTACGGCAACGAAGTGAAACATAAG : 3165184 vulgar: NvOr118 258 323 . KQ414646.1 3164992 3165184 + 110 M 35 105 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164993 3165184 110 + . gene_id 3 ; sequence NvOr118 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164993 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164993 3165184 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3164993 3165184 110 + . alignment_id 3 ; Query NvOr118 ; Align 3164993 259 105 ; Align 3165098 295 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr118 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 258 -> 323 Target range: 3158464 -> 3158656 259 : ArgIleGlnSerValPheIleSerIleValLeuProIlePheCysSerAlaLeuLe : 277 !:!:!:.!...!! !|||! ! !|||:!!:!! !! !||||||! !::!:!!! LysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSe 3158465 : AAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTC : 3158519 278 : uThrLeuCysPheSerThrPheGlnLeuAlaGlnLysAsnGlnThrThrGlyGluT : 296 !..!:!!||||||!:! !!:!!:!:!!.!!|||! !!...! ||| :::: rValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThr---LysP 3158520 : GGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacg---aaat : 3158573 297 : yrCysPheIleIleThrTyrLeuCysCysLeuLeuValGlnIlePheCysLeuCys : 314 :: |||||| !|||! !! !||| !:!!..!|||||||||! !! !||| heValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCys 3158574 : tcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGT : 3158627 315 : TrpPheGlyAsnGluLeuGlnPheLys : 323 |||!:!|||||||||:!!:!! !||| TrpTyrGlyAsnGluValLysAspLys 3158628 : TGGTACGGCAACGAAGTGAAAGATAAG : 3158656 vulgar: NvOr118 258 323 . KQ414646.1 3158464 3158656 + 108 M 35 105 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158465 3158656 108 + . gene_id 4 ; sequence NvOr118 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158465 3158656 . + . KQ414646.1 exonerate:protein2genome:local exon 3158465 3158656 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3158465 3158656 108 + . alignment_id 4 ; Query NvOr118 ; Align 3158465 259 105 ; Align 3158570 295 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr117 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 251 -> 315 Target range: 3178399 -> 3178591 252 : IleGlnSerValPheIleAlaIleValLeuProIlePheSerSerAlaLeuLeuTh : 270 :!:.!.!!!|||||| !!!::!!!!!! ! !||||||! !::!! ! !.. ValAsnThrValPheGlnTyrMetIlePheLeuGlnPheSerIleSerSerThrVa 3178400 : GTGAACACTGTGTTCCAGTACATGATTTTCCTGCAATTTTCCATCAGTTCGACGGT : 3178454 271 : rLeuCysThrSerIlePheGlnLeuAlaGlnLysAsnHisThrThrGlyGluTyrC : 289 !|||||| !||||||!:!:!!:!!:!! !! |||! !!:! !.!.!:! lLeuCysLeuSerIleTyrLysMetSerThrIleAsnProPheSerMetAsnPheV 3178455 : GCTGTGTTTGAGCATCTATAAAATGTCGACGATTAATCCATTTAGCATGAACTTCG : 3178511 290 : ysPheIleIleLeuTyrLeuCysCysLeuLeuValGlnThrPheSerLeuCysTrp : 307 !!:: ! !! !||||||||||||:!!|||..!|||..!!:!! !! !|||||| alTrpCysAlaSerTyrLeuCysCysMetLeuThrGlnValTyrLeuTyrCysTrp 3178512 : TCTGGTGCGCCTCCTATTTATGCTGTATGCTCACGCAGGTGTATTTATACTGTTGG : 3178565 308 : PheGlyAsnGluLeuGlnSerLys : 315 ||||||||||||:!! !! !||| PheGlyAsnGluValThrLeuLys 3178566 : TTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: NvOr117 251 315 . KQ414646.1 3178399 3178591 + 121 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178400 3178591 121 + . gene_id 1 ; sequence NvOr117 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178400 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178400 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178400 3178591 121 + . alignment_id 1 ; Query NvOr117 ; Align 3178400 252 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr117 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 251 -> 315 Target range: 3155820 -> 3156012 252 : IleGlnSerValPheIleAlaIleValLeuProIlePheSerSerAlaLeuLeuTh : 270 |||.!...! !||| ! :!!!!! !! !|||:!! !::! !|||.! IleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAlaValSerThrLeuAl 3155821 : ATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGTGAGTACGCTGGC : 3155875 271 : rLeuCysThrSerIlePheGlnLeuAlaGlnLysAsnHisThrThrGlyGluTyrC : 289 !:!!||| !!:!:!!!:!! !|||.!! !..!:!! ||| !! !..!||| aIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValThrProIleArgTyrV 3155876 : GATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGACGCCGATTAGGTATG : 3155932 290 : ysPheIleIleLeuTyrLeuCysCysLeuLeuValGlnThrPheSerLeuCysTrp : 307 ||||||:!!||| ! !!|||:!!|||..!|||! !|||! !! !|||||| alGluIleIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysTrp 3155933 : TGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTGG : 3155986 308 : PheGlyAsnGluLeuGlnSerLys : 315 !:!|||||||||:!!:!! !||| TyrGlyAsnGluValLysLeuLys 3155987 : TACGGGAACGAAGTTAAGCTGAAG : 3156012 vulgar: NvOr117 251 315 . KQ414646.1 3155820 3156012 + 108 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155821 3156012 108 + . gene_id 2 ; sequence NvOr117 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155821 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155821 3156012 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155821 3156012 108 + . alignment_id 2 ; Query NvOr117 ; Align 3155821 252 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr117 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 263 -> 315 Target range: 3180511 -> 3180667 264 : PheSerSerAlaLeuLeuThrLeuCysThrSerIlePheGlnLeuAlaGlnLysAs : 282 |||! !.!!::!!!!:!!..!:!!||| !|||:!:.!!|||||| !.!. !:! PhePheGlySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAs 3180512 : TTTTTCGGAAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGA : 3180566 283 : nHisThrThrGlyGluTyrCysPheIleIleLeuTyrLeuCysCysLeuLeuValG : 301 ! ! !!:! !|||!:!! ! |||...|||||| ::!|||:!!| pIleLeuSerThrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuG 3180567 : TATTCTCAGCACCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGC : 3180623 302 : lnThrPheSerLeuCysTrpPheGlyAsnGluLeuGlnSerLys : 315 ||!:!||| !! !||||||!:!|||||||||:!!::!!!!||| lnSerPheLeuTyrCysTrpTyrGlyAsnGluValArgThrLys 3180624 : AGAGCTTTCTTTACTGTTGGTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: NvOr117 263 315 . KQ414646.1 3180511 3180667 + 107 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180512 3180667 107 + . gene_id 3 ; sequence NvOr117 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180512 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180512 3180667 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180512 3180667 107 + . alignment_id 3 ; Query NvOr117 ; Align 3180512 264 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr120PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 245 -> 310 Target range: 3178396 -> 3178591 246 : ThrIleGlnLysIleValGlnArgIleGlnSerAlaPheIleProIleValLeuPr : 264 |||:!:.!.! :!: !!||| !!!: ! ! ! .!! !!||| !! ! ! ThrValAsnThrValPheGlnTyrMetIlePheLeuGlnPheSerIleSerSerTh 3178397 : ACGGTGAACACTGTGTTCCAGTACATGATTTTCCTGCAATTTTCCATCAGTTCGAC : 3178451 265 : oIlePheCysSerAlaLeuLeuThrLeuCysThrUnkAsnHisSerValValGluT : 283 !:!:.!.|||! !::!:!!! !! !:!!! ||| |||! ! ! !:!!.!.! rValLeuCysLeuSerIleTyrLysMetSerThrIleAsnProPheSerMetAsnP 3178452 : GGTGCTGTGTTTGAGCATCTATAAAATGTCGACGATTAATCCATTTAGCATGAACT : 3178508 284 : yrCysPheIleThrIleTyrLeuCysCysLeuLeuPheGlnIleTyrCysPheCys : 301 :! !!:: !.!! !||||||||||||:!!||| |||:!:|||! !:!||| heValTrpCysAlaSerTyrLeuCysCysMetLeuThrGlnValTyrLeuTyrCys 3178509 : TCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACGCAGGTGTATTTATACTGT : 3178562 302 : TrpTyrGlyAsnGluValGlnLeuLys : 310 |||!:!|||||||||||| !|||||| TrpPheGlyAsnGluValThrLeuLys 3178563 : TGGTTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: NvOr120PSE 245 310 . KQ414646.1 3178396 3178591 + 121 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178397 3178591 121 + . gene_id 1 ; sequence NvOr120PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178397 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178397 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178397 3178591 121 + . alignment_id 1 ; Query NvOr120PSE ; Align 3178397 246 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr120PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 265 -> 310 Target range: 3155877 -> 3156012 266 : PheCysSerAlaLeuLeuThrLeuCysThrUnkAsnHisSerValValGluTyrCy : 284 .!.|||! ! !|||! ! !||| !...:!! !!! !:!!..!||| IleCysPheAsnLeuTyrLeuLeuThrGlySerAspValThrProIleArgTyrVa 3155878 : ATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGACGCCGATTAGGTATGT : 3155932 285 : sPheIleThrIleTyrLeuCysCysLeuLeuPheGlnIleTyrCysPheCysTrpT : 303 |||! !!!:||| ! !!|||:!!||| ||||||!:! !!:!||||||| lGluIleIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysTrpT 3155933 : GGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTGGT : 3155989 304 : yrGlyAsnGluValGlnLeuLys : 310 ||||||||||||||:!!|||||| yrGlyAsnGluValLysLeuLys 3155990 : ACGGGAACGAAGTTAAGCTGAAG : 3156012 vulgar: NvOr120PSE 265 310 . KQ414646.1 3155877 3156012 + 104 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155878 3156012 104 + . gene_id 2 ; sequence NvOr120PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155878 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155878 3156012 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155878 3156012 104 + . alignment_id 2 ; Query NvOr120PSE ; Align 3155878 266 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr114 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 277 -> 344 Target range: 3155820 -> 3156021 278 : LeuAsnAsnThrPheTyrGluValValThrIleGlnPheLeuThrThrIleSerIl : 296 :!!|||.!. !||| ! !!.!:!! !! !|||||| !..!!:!! ! IleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAlaValSerThrLeuAl 3155821 : ATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGTGAGTACGCTGGC : 3155875 297 : eValCysThrAsnIleTyrPheLeuSerLysGlnGluLeuPheSerAlaAspPheI : 315 :!!||| !|||:!!|||.!.|||!!! !..!!!::!! !! ! !:!: aIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValThrProIleArgTyrV 3155876 : GATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGACGCCGATTAGGTATG : 3155932 316 : leGlyValLeuValPheLeuValCysValLeuThrGlnAsnPheIlePheCysTrp : 333 !:! !:!!:!!:!!!:! ! !|||:!!|||||||||! ||||||!:!|||||| alGluIleIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysTrp 3155933 : TGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTGG : 3155986 334 : TyrGlyTyrLysLeuSerGluSerSerSerTyr : 344 |||||| !!:!!:!!!.! !!.! !|||||| TyrGlyAsnGluValLysLeuLysValSerTyr 3155987 : TACGGGAACGAAGTTAAGCTGAAGGTTTCTTAT : 3156021 vulgar: NvOr114 277 344 . KQ414646.1 3155820 3156021 + 123 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155821 3156021 123 + . gene_id 1 ; sequence NvOr114 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155821 3156021 . + . KQ414646.1 exonerate:protein2genome:local exon 3155821 3156021 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155821 3156021 123 + . alignment_id 1 ; Query NvOr114 ; Align 3155821 278 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr123PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 223 -> 296 Target range: 3155820 -> 3156039 224 : IleGlnSerPhePheIleArgAlaValIleProPhePheLeuPheSerLeuIleSe : 242 |||.!...! ||| ! !|||:!!.!! !! ||| ! ! ||| !:!::! IleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAlaValSerThrLeuAl 3155821 : ATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGTGAGTACGCTGGC : 3155875 243 : rIleCysSerThrThrPheGlnValSerGlnHisSerIlePheSerPheLysPheL : 261 !||||||! !!.! !!:!! !:!!!!! ! ..!:!: !!.!!!:!!:!: aIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValThrProIleArgTyrV 3155876 : GATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGACGCCGATTAGGTATG : 3155932 262 : euGlyLeuIleThrPheAlaThrCysValLeuLeuGlnValPheLeuTyrCysTrp : 279 !!! !:!!|||! !!:!::!!:!|||:!!||| !|||:!!|||:!!||||||||| alGluIleIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysTrp 3155933 : TGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTGG : 3155986 280 : PheGlyAsnLysMetLysIleLysSerThrAlaIleLeuSerAlaAlaTyr : 296 !:!||||||:!!:!:|||:!:||| !:!! !.!!! ! !..!:!!||| TyrGlyAsnGluValLysLeuLysValSerTyrPheArgHisCysSerTyr 3155987 : TACGGGAACGAAGTTAAGCTGAAGGTTTCTTATTTTCGACATTGTTCATAT : 3156039 vulgar: NvOr123PSE 223 296 . KQ414646.1 3155820 3156039 + 127 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155821 3156039 127 + . gene_id 1 ; sequence NvOr123PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155821 3156039 . + . KQ414646.1 exonerate:protein2genome:local exon 3155821 3156039 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155821 3156039 127 + . alignment_id 1 ; Query NvOr123PSE ; Align 3155821 224 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr123PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 235 -> 287 Target range: 3180511 -> 3180667 236 : PheLeuPheSerLeuIleSerIleCysSerThrThrPheGlnValSerGlnHisSe : 254 |||!!! |||!!!!!: !|||||| !!:! !.!!|||:!!! !.!. .. PhePheGlySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAs 3180512 : TTTTTCGGAAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGA : 3180566 255 : rIlePheSerPheLysPheLeuGlyLeuIleThrPheAlaThrCysValLeuLeuG : 273 !|||.!!||| !:!!||||||!.! !||| ::: ::: ::!||||||| pIleLeuSerThrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuG 3180567 : TATTCTCAGCACCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGC : 3180623 274 : lnValPheLeuTyrCysTrpPheGlyAsnLysMetLysIleLys : 287 || !|||||||||||||||!:!||||||:!!:!!!:!! ||| lnSerPheLeuTyrCysTrpTyrGlyAsnGluValArgThrLys 3180624 : AGAGCTTTCTTTACTGTTGGTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: NvOr123PSE 235 287 . KQ414646.1 3180511 3180667 + 113 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180512 3180667 113 + . gene_id 2 ; sequence NvOr123PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180512 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180512 3180667 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180512 3180667 113 + . alignment_id 2 ; Query NvOr123PSE ; Align 3180512 236 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr123PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 223 -> 287 Target range: 3178399 -> 3178591 224 : IleGlnSerPhePheIleArgAlaValIleProPhePheLeuPheSerLeuIleSe : 242 :!:.!.!!! ! ||| ! !:!!.!!! ! |||! !.!!|||! !! ValAsnThrValPheGlnTyrMetIlePheLeuGlnPheSerIleSerSerThrVa 3178400 : GTGAACACTGTGTTCCAGTACATGATTTTCCTGCAATTTTCCATCAGTTCGACGGT : 3178454 243 : rIleCysSerThrThrPheGlnValSerGlnHisSerIlePheSerPheLysPheL : 261 !:!:|||! !!:!! !!:!:!!:!!||| ! !!:! !||||||.!.!!.|||: lLeuCysLeuSerIleTyrLysMetSerThrIleAsnProPheSerMetAsnPheV 3178455 : GCTGTGTTTGAGCATCTATAAAATGTCGACGATTAATCCATTTAGCATGAACTTCG : 3178511 262 : euGlyLeuIleThrPheAlaThrCysValLeuLeuGlnValPheLeuTyrCysTrp : 279 !! !!! ! !:!!!:! ! !|||:!!||| !||||||!:!|||||||||||| alTrpCysAlaSerTyrLeuCysCysMetLeuThrGlnValTyrLeuTyrCysTrp 3178512 : TCTGGTGCGCCTCCTATTTATGCTGTATGCTCACGCAGGTGTATTTATACTGTTGG : 3178565 280 : PheGlyAsnLysMetLysIleLys : 287 |||||||||:!!:!!! !:!:||| PheGlyAsnGluValThrLeuLys 3178566 : TTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: NvOr123PSE 223 287 . KQ414646.1 3178399 3178591 + 112 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178400 3178591 112 + . gene_id 3 ; sequence NvOr123PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178400 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178400 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178400 3178591 112 + . alignment_id 3 ; Query NvOr123PSE ; Align 3178400 224 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr123PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 222 -> 287 Target range: 3158464 -> 3158656 223 : LysIleGlnSerPhePheIleArgAlaValIleProPhePheLeuPheSerLeuIl : 241 |||:!:.!...! |||! !! ! !:!!||| !! |||! !.!.|||:!! LysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSe 3158465 : AAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTC : 3158519 242 : eSerIleCysSerThrThrPheGlnValSerGlnHisSerIlePheSerPheLysP : 260 !||||||! !!.! !!:!!:!:!!!!!||| !!.!!!: ... |||| rValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMet---AspThrLysP 3158520 : GGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATG---GAcacgaaat : 3158573 261 : heLeuGlyLeuIleThrPheAlaThrCysValLeuLeuGlnValPheLeuTyrCys : 278 ||::: :::||| !!:!:!! !|||..!:!! !|||:!!|||! !|||||| heValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCys 3158574 : tcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGT : 3158627 279 : TrpPheGlyAsnLysMetLysIleLys : 287 |||!:!||||||:!!:!!||| !||| TrpTyrGlyAsnGluValLysAspLys 3158628 : TGGTACGGCAACGAAGTGAAAGATAAG : 3158656 vulgar: NvOr123PSE 222 287 . KQ414646.1 3158464 3158656 + 103 M 33 99 G 1 0 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158465 3158656 103 + . gene_id 4 ; sequence NvOr123PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158465 3158656 . + . KQ414646.1 exonerate:protein2genome:local exon 3158465 3158656 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3158465 3158656 103 + . alignment_id 4 ; Query NvOr123PSE ; Align 3158465 223 99 ; Align 3158564 257 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr123PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 222 -> 287 Target range: 3164992 -> 3165184 223 : LysIleGlnSerPhePheIleArgAlaValIleProPhePheLeuPheSerLeuIl : 241 |||:!:.!...! |||! !! ! !:!!||| !! |||! !.!.|||:!! LysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSe 3164993 : AAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTC : 3165047 242 : eSerIleCysSerThrThrPheGlnValSerGlnHisSerIlePheSerPheLysP : 260 !||||||! !!.! !!:!!:!:!!!!!||| !!.!!!: ... |||| rValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMet---AspThrLysP 3165048 : GGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATG---GAcacgaaat : 3165101 261 : heLeuGlyLeuIleThrPheAlaThrCysValLeuLeuGlnValPheLeuTyrCys : 278 ||::: :::||| !!:!:!! !|||..!:!! !|||:!!|||! !|||||| heValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCys 3165102 : tcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGC : 3165155 279 : TrpPheGlyAsnLysMetLysIleLys : 287 |||!:!||||||:!!:!!||| !||| TrpTyrGlyAsnGluValLysHisLys 3165156 : TGGTACGGCAACGAAGTGAAACATAAG : 3165184 vulgar: NvOr123PSE 222 287 . KQ414646.1 3164992 3165184 + 103 M 33 99 G 1 0 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164993 3165184 103 + . gene_id 5 ; sequence NvOr123PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164993 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164993 3165184 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3164993 3165184 103 + . alignment_id 5 ; Query NvOr123PSE ; Align 3164993 223 99 ; Align 3165092 257 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr121PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 190 Query range: 148 -> 295 Target range: 3180140 -> 3180667 149 : LeuProPheLysSerTyrGlnProTyrGluIleSerSerAlaThrAsnPheTrpIl : 167 ||| !!!:!!:!.!!!:: ||||||!!: !!!!!!!|||..! !||| :! LeuThrTyrArgGlyTrpPheProTyrAspTyrThrThrAlaValLeuPheProLe 3180141 : CTAACCTACAGAGGCTGGTTCCCTTACGATTACACGACCGCCGTACTTTTTCCATT : 3180195 168 : eThrTyrAlaLeuGlnIlePheAlaAlaIleTyrGlyValLeuLeuAsnValSerM : 186 :|||||||||||||||:!!!!...!!.!:!! ! !! !:!!:!!||||||: uThrTyrAlaLeuGlnLeuLeuCysValLeuValTyrSerTrpIleHisValSerV 3180196 : GACATACGCTCTGCAGCTATTATGCGTGCTCGTATATTCCTGGATCCACGTTTCAG : 3180252 187 : etAspThrLeuValTyrGlyPheIleIleMetAlaThrGlyGlnPheGluIleAsn : 204 !!|||! !||| !!!:!|||.!.:!:!!:... ! ! !!||||||!!:||| alAspIleLeuPhePheGlyLeuLeuMetGlnLeuCysCysGlnPheAspIleLeu 3180253 : TGGATATTCTCTTCTTCGGACTGTTGATGCAACTGTGCTGTCAATTCGAcattctc : 3180306 205 : CysTyrArgLeuGluAsnSerThrCysSerMetArgAspCysIleGluHisHisVa : 223 |||......!:!! !|||! ..!! !:!! ! !:!!..!... !:! PheSerArgPheSerSerIleThrSerGluAsnLysGlyValLeuArgArgCysIl 3180307 : ttctctcgtttcAGTAGCATAACGTCGGAGAACAAGGGTGTTTTACGAAGATGCAT : 3180363 224 : lLeuIleGlnAspIleValTyr{Ly} >>>> Target Intron 1 >>>> { : 231 !! ! !!!.|||! !:!!|||{::} 86 bp { eArgHisHisAspArgIleTyr{Ar}++ +-{ 3180364 : TCGTCATCACGACAGAATTTAC{CG}gt.........................at{ : 3180475 232 : s}IleGlnHisPhePheIleTyrValValValProLeuPheLeuPheSerLeuVal : 249 !}!!:.!. !! !.!. ..!:!! !! !!! !|||!!! |||!!!:!! g}MetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePheGlySerPheMet 3180476 : A}ATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTTCGGAAGCTTTATG : 3180527 250 : ThrLeuCysThrSerIlePheGlnMetSerGlnLysGlnValAlaSerPheGluPh : 268 ..!:!!||| !|||:!:.!!|||:!!! !.!. !.!.:!! !||| !||||| ValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleLeuSerThrGluPh 3180528 : GTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTCTCAGCACCGAATT : 3180584 269 : eLeuSerLeuThrMetTyrLeuAlaCysMetLeuCysGlnValPheLeuTyrCysT : 287 ||||:!! !! ...||||||::: :::||| ||| !||||||||||||| eLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPheLeuTyrCysT 3180585 : CTTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGCTTTCTTTACTGTT : 3180641 288 : rpPheGlyAsnGluLeuGluLeuLys : 295 ||!:!|||||||||:!!..! !||| rpTyrGlyAsnGluValArgThrLys 3180642 : GGTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: NvOr121PSE 148 295 . KQ414646.1 3180140 3180667 + 190 M 82 246 S 0 2 5 0 2 I 0 82 3 0 2 S 1 1 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180141 3180667 190 + . gene_id 1 ; sequence NvOr121PSE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3180141 3180388 . + . KQ414646.1 exonerate:protein2genome:local exon 3180141 3180388 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3180389 3180390 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3180389 3180474 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3180473 3180474 . + . intron_id 0 ; splice_site "AT" KQ414646.1 exonerate:protein2genome:local cds 3180475 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180475 3180667 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180141 3180667 190 + . alignment_id 1 ; Query NvOr121PSE ; Align 3180141 149 246 ; Align 3180476 232 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr121PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 231 -> 299 Target range: 3178399 -> 3178603 232 : IleGlnHisPhePheIleTyrValValValProLeuPheLeuPheSerLeuValTh : 250 :!:.!. ! ! ||| |||:!!:!! !!! !! !|||! !.!!|||! !..!.. ValAsnThrValPheGlnTyrMetIlePheLeuGlnPheSerIleSerSerThrVa 3178400 : GTGAACACTGTGTTCCAGTACATGATTTTCCTGCAATTTTCCATCAGTTCGACGGT : 3178454 251 : rLeuCysThrSerIlePheGlnMetSerGlnLysGlnValAlaSerPheGluPheL : 269 !|||||| !||||||!:!:!!|||||| !! .!. ! !|||.!..!.|||: lLeuCysLeuSerIleTyrLysMetSerThrIleAsnProPheSerMetAsnPheV 3178455 : GCTGTGTTTGAGCATCTATAAAATGTCGACGATTAATCCATTTAGCATGAACTTCG : 3178511 270 : euSerLeuThrMetTyrLeuAlaCysMetLeuCysGlnValPheLeuTyrCysTrp : 287 !!!!!! !.!! ||||||..!||||||||| ||||||!:!|||||||||||| alTrpCysAlaSerTyrLeuCysCysMetLeuThrGlnValTyrLeuTyrCysTrp 3178512 : TCTGGTGCGCCTCCTATTTATGCTGTATGCTCACGCAGGTGTATTTATACTGTTGG : 3178565 288 : PheGlyAsnGluLeuGluLeuLysSerAsnAlaVal : 299 ||||||||||||:!! !|||||| !..!.!!||| PheGlyAsnGluValThrLeuLysValGlyThrVal 3178566 : TTCGGGAACGAGGTGACGTTGAAGGTTGGCACCGTG : 3178603 vulgar: NvOr121PSE 231 299 . KQ414646.1 3178399 3178603 + 150 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178400 3178603 150 + . gene_id 2 ; sequence NvOr121PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178400 3178603 . + . KQ414646.1 exonerate:protein2genome:local exon 3178400 3178603 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178400 3178603 150 + . alignment_id 2 ; Query NvOr121PSE ; Align 3178400 232 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr121PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 228 -> 295 Target range: 3150607 -> 3150808 229 : ValTyrLysIleGlnHisPhePheIleTyrValValValProLeuPheLeuPheSe : 247 |||!:!! !!!:|||.!. |||! !!:::!!:!!! ! !! !.!!|||! || ValPheThrMetGlnGluLysPheArgTrpIleIleGlyValGlnLeuLeuSerSe 3150608 : GTTTTCACGATGCAAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTTATCGAG : 3150662 248 : rLeuValThrLeuCysThrSerIlePheGlnMetSerGlnLysGlnValAlaSerP : 266 | !:!!..!:!!||| !! !:!:!:!:!!:!!:!!.!.! !! ! !|||! rThrLeuValValCysPheIleLeuTyrGluLeuAlaAsnThrProProIleSerS 3150663 : CACGCTGGTAGTGTGTTTCATCCTGTACGAATTGGCGAACACGCCTCCAATCAGCT : 3150719 267 : heGluPheLeuSerLeuThrMetTyrLeuAlaCysMetLeuCysGlnValPheLeu : 284 !:!!!:!|||..!!!!..!:!!|||||||||||||||:!! |||:!!|||!!! erLysTyrLeuGlnPheValLeuTyrLeuAlaCysMetMetThrGlnIlePhePhe 3150720 : CCAAGTACCTGCAATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATCTTCTTT : 3150773 285 : TyrCysTrpPheGlyAsnGluLeuGluLeuLys : 295 |||||||||!:!|||.!.:!!|||:!!|||||| TyrCysTrpTyrGlyGluGlnLeuLysLeuLys 3150774 : TACTGCTGGTACGGCGAGCAGTTGAAACTGAAG : 3150808 vulgar: NvOr121PSE 228 295 . KQ414646.1 3150607 3150808 + 138 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150608 3150808 138 + . gene_id 3 ; sequence NvOr121PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150608 3150808 . + . KQ414646.1 exonerate:protein2genome:local exon 3150608 3150808 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150608 3150808 138 + . alignment_id 3 ; Query NvOr121PSE ; Align 3150608 229 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr121PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 231 -> 304 Target range: 3155820 -> 3156039 232 : IleGlnHisPhePheIleTyrValValValProLeuPheLeuPheSerLeuValTh : 250 |||.!..!. ||| !.!:!! !! !!! !||| ! ! ||| !:!!.! IleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAlaValSerThrLeuAl 3155821 : ATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGTGAGTACGCTGGC : 3155875 251 : rLeuCysThrSerIlePheGlnMetSerGlnLysGlnValAlaSerPheGluPheL : 269 !:!!||| !!:!:!!!:!! !:!:!!! !..!.!.|||.!! !!.!!..!!:!: aIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValThrProIleArgTyrV 3155876 : GATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGACGCCGATTAGGTATG : 3155932 270 : euSerLeuThrMetTyrLeuAlaCysMetLeuCysGlnValPheLeuTyrCysTrp : 287 !!..!:!!! !|||||| !::!||||||||| |||:!!|||:!!||||||||| alGluIleIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysTrp 3155933 : TGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTGG : 3155986 288 : PheGlyAsnGluLeuGluLeuLysSerAsnAlaValAlaAsnAlaIleTyr : 304 !:!|||||||||:!!:!!|||||| !::! ! !! !:!!..! !||| TyrGlyAsnGluValLysLeuLysValSerTyrPheArgHisCysSerTyr 3155987 : TACGGGAACGAAGTTAAGCTGAAGGTTTCTTATTTTCGACATTGTTCATAT : 3156039 vulgar: NvOr121PSE 231 304 . KQ414646.1 3155820 3156039 + 135 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155821 3156039 135 + . gene_id 4 ; sequence NvOr121PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155821 3156039 . + . KQ414646.1 exonerate:protein2genome:local exon 3155821 3156039 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155821 3156039 135 + . alignment_id 4 ; Query NvOr121PSE ; Align 3155821 232 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr121PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 230 -> 295 Target range: 3164992 -> 3165184 231 : LysIleGlnHisPhePheIleTyrValValValProLeuPheLeuPheSerLeuVa : 249 |||:!:.!..!. |||! ! :!!:!!:!! !!! !|||! !.!.|||:!! LysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSe 3164993 : AAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTC : 3165047 250 : lThrLeuCysThrSerIlePheGlnMetSerGlnLysGlnValAlaSerPheGluP : 268 !..!:!!||| !!:!:!!!:!!:!|||!!!|||! :!!:!!! ::: :::| rValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThr---LysP 3165048 : GGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacg---aaat : 3165101 269 : heLeuSerLeuThrMetTyrLeuAlaCysMetLeuCysGlnValPheLeuTyrCys : 286 ||:::...::: !:!:|||! ! !|||! :!! |||:!!|||! !|||||| heValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCys 3165102 : tcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGC : 3165155 287 : TrpPheGlyAsnGluLeuGluLeuLys : 295 |||!:!|||||||||:!!:!!! !||| TrpTyrGlyAsnGluValLysHisLys 3165156 : TGGTACGGCAACGAAGTGAAACATAAG : 3165184 vulgar: NvOr121PSE 230 295 . KQ414646.1 3164992 3165184 + 114 M 35 105 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164993 3165184 114 + . gene_id 5 ; sequence NvOr121PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164993 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164993 3165184 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3164993 3165184 114 + . alignment_id 5 ; Query NvOr121PSE ; Align 3164993 231 105 ; Align 3165098 267 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr121PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 230 -> 295 Target range: 3158464 -> 3158656 231 : LysIleGlnHisPhePheIleTyrValValValProLeuPheLeuPheSerLeuVa : 249 |||:!:.!..!. |||! ! :!!:!!:!! !!! !|||! !.!.|||:!! LysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSe 3158465 : AAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTC : 3158519 250 : lThrLeuCysThrSerIlePheGlnMetSerGlnLysGlnValAlaSerPheGluP : 268 !..!:!!||| !!:!:!!!:!!:!|||!!!|||! :!!:!!! ::: :::| rValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThr---LysP 3158520 : GGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacg---aaat : 3158573 269 : heLeuSerLeuThrMetTyrLeuAlaCysMetLeuCysGlnValPheLeuTyrCys : 286 ||:::...::: !:!:|||! ! !|||! :!! |||:!!|||! !|||||| heValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCys 3158574 : tcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGT : 3158627 287 : TrpPheGlyAsnGluLeuGluLeuLys : 295 |||!:!|||||||||:!!:!! !||| TrpTyrGlyAsnGluValLysAspLys 3158628 : TGGTACGGCAACGAAGTGAAAGATAAG : 3158656 vulgar: NvOr121PSE 230 295 . KQ414646.1 3158464 3158656 + 113 M 35 105 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158465 3158656 113 + . gene_id 6 ; sequence NvOr121PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158465 3158656 . + . KQ414646.1 exonerate:protein2genome:local exon 3158465 3158656 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3158465 3158656 113 + . alignment_id 6 ; Query NvOr121PSE ; Align 3158465 231 105 ; Align 3158570 267 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr121PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 235 -> 295 Target range: 3160750 -> 3160927 236 : PheIleTyrValValValProLeuPheLeuPheSerLeuValThrLeuCysThrSe : 254 |||! ! !..!:!!!.! !!! !|||||| ! !!! !:!!|||:!!||| !!: PheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThrMetCysPheAs 3160751 : TTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACAATGTGCTTCAA : 3160805 255 : rIlePheGlnMetSerGlnLysGlnValAlaSerPheGluPheLeuSerLeuThrM : 273 !:!!|||!:!:!!!!!|||! :!!||| !||| :!! !!|||:!!|||! ! nLeuPheArgLeuThrGlnThrLysValTyrSer---GlnValLeuAlaLeuIleP 3160806 : CCTCTTTCGACTGACACAGACCAAGGTGTATTCG---CAAGTTTTAGCATTGATAC : 3160859 274 : etTyrLeuAlaCysMetLeuCysGlnValPheLeuTyrCysTrpPheGlyAsnGlu : 291 !!:!:!!!.! !!:!!!!!...|||:!!|||! !! !||||||!:!||||||||| roPheMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnGlu 3160860 : CGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACGAG : 3160913 292 : LeuGluLeuLys : 295 !:!!:!!||| ThrLysValLys 3160914 : ACCAAAGTGAAG : 3160927 vulgar: NvOr121PSE 235 295 . KQ414646.1 3160750 3160927 + 100 M 30 90 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160751 3160927 100 + . gene_id 7 ; sequence NvOr121PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160751 3160927 . + . KQ414646.1 exonerate:protein2genome:local exon 3160751 3160927 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3160751 3160927 100 + . alignment_id 7 ; Query NvOr121PSE ; Align 3160751 236 90 ; Align 3160841 267 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr121PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 235 -> 295 Target range: 3174961 -> 3175138 236 : PheIleTyrValValValProLeuPheLeuPheSerLeuValThrLeuCysThrSe : 254 |||! ! !..!:!!!.! !!! !|||||| ! !!! !:!!|||:!!||| !!: PheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThrMetCysPheAs 3174962 : TTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACAATGTGCTTCAA : 3175016 255 : rIlePheGlnMetSerGlnLysGlnValAlaSerPheGluPheLeuSerLeuThrM : 273 !:!!|||!:!:!!!!!|||! :!!||| !||| :!! !!|||:!!|||! ! nLeuPheArgLeuThrGlnThrLysValTyrSer---GlnValLeuAlaLeuIleP 3175017 : CCTCTTTCGACTGACACAGACCAAGGTGTATTCG---CAAGTTTTAGCATTGATAC : 3175070 274 : etTyrLeuAlaCysMetLeuCysGlnValPheLeuTyrCysTrpPheGlyAsnGlu : 291 !!:!:!!!.! !!:!!!!!...|||:!!|||! !! !||||||!:!||||||||| roPheMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnGlu 3175071 : CGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACGAG : 3175124 292 : LeuGluLeuLys : 295 !:!!:!!||| ThrLysValLys 3175125 : ACCAAAGTGAAG : 3175138 vulgar: NvOr121PSE 235 295 . KQ414646.1 3174961 3175138 + 100 M 30 90 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174962 3175138 100 + . gene_id 8 ; sequence NvOr121PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174962 3175138 . + . KQ414646.1 exonerate:protein2genome:local exon 3174962 3175138 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3174962 3175138 100 + . alignment_id 8 ; Query NvOr121PSE ; Align 3174962 236 90 ; Align 3175052 267 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr113 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 251 -> 321 Target range: 3150604 -> 3150814 252 : PheIleArgGluLeuAsnAspThrPheCysGluThrValPhePheGlnPheLeuSe : 270 !:!:!! ! !:!!.!.!!:! !||| ! !! !:!! ! ! |||.!!||||| TyrValPheThrMetGlnGluLysPheArgTrpIleIleGlyValGlnLeuLeuSe 3150605 : TACGTTTTCACGATGCAAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTTATC : 3150659 271 : rSerIleLeuValLeuCysThrAsnIlePheLeuLeuSerLysGlnGluLeuPheS : 289 ||||! ||||||:!!||| !! !:!:!:! !|||:!!!!. ! ! !.!!| rSerThrLeuValValCysPheIleLeuTyrGluLeuAlaAsnThrProProIleS 3150660 : GAGCACGCTGGTAGTGTGTTTCATCCTGTACGAATTGGCGAACACGCCTCCAATCA : 3150716 290 : erProGluPheIleAlaValPheSerTyrPheCysCysValLeuAlaGlnAsnPhe : 307 || !!:!!!:!:!: ! !! !! !|||.!...!|||:!!:!!.!!|||! !||| erSerLysTyrLeuGlnPheValLeuTyrLeuAlaCysMetMetThrGlnIlePhe 3150717 : GCTCCAAGTACCTGCAATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATCTTC : 3150770 308 : PheTyrCysTrpTyrGlyTyrLysLeuSerValAsnSerLeu : 321 |||||||||||||||||| ! :!!|||!.!:!!!!. !||| PheTyrCysTrpTyrGlyGluGlnLeuLysLeuLysValLeu 3150771 : TTTTACTGCTGGTACGGCGAGCAGTTGAAACTGAAGGTACTG : 3150814 vulgar: NvOr113 251 321 . KQ414646.1 3150604 3150814 + 117 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150605 3150814 117 + . gene_id 1 ; sequence NvOr113 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150605 3150814 . + . KQ414646.1 exonerate:protein2genome:local exon 3150605 3150814 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150605 3150814 117 + . alignment_id 1 ; Query NvOr113 ; Align 3150605 252 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr113 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 251 -> 313 Target range: 3158455 -> 3158638 252 : PheIleArgGluLeuAsnAspThrPheCysGluThrValPhePheGlnPheLeuSe : 270 ||| !:!:!!:!!|||!!: !||| !! !:!!.!!! !||||||! !! PheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIl 3158456 : TTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCAT : 3158510 271 : rSerIleLeuValLeuCysThrAsnIlePheLeuLeuSerLysGlnGluLeuPheS : 289 !|||!!:! !|||:!!||| !|||:!!!:!! !:!!!!!:!! :!!:!! . eSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMet---A 3158511 : AAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATG---G : 3158564 290 : erProGluPheIleAlaValPheSerTyrPheCysCysValLeuAlaGlnAsnPhe : 307 .. :::|||::: :::.!. !|||! !! !|||..!:!!.!!|||! ||| spThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePhe 3158565 : AcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTT : 3158618 308 : PheTyrCysTrpTyrGly : 313 !:!||||||||||||||| TyrTyrCysTrpTyrGly 3158619 : TACTATTGTTGGTACGGC : 3158638 vulgar: NvOr113 251 313 . KQ414646.1 3158455 3158638 + 106 M 36 108 G 1 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158456 3158638 106 + . gene_id 2 ; sequence NvOr113 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158456 3158638 . + . KQ414646.1 exonerate:protein2genome:local exon 3158456 3158638 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3158456 3158638 106 + . alignment_id 2 ; Query NvOr113 ; Align 3158456 252 108 ; Align 3158564 289 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr113 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 251 -> 313 Target range: 3164983 -> 3165166 252 : PheIleArgGluLeuAsnAspThrPheCysGluThrValPhePheGlnPheLeuSe : 270 ||| !:!:!!:!!|||!!: !||| !! !:!!.!!! !||||||! !! PheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIl 3164984 : TTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCAT : 3165038 271 : rSerIleLeuValLeuCysThrAsnIlePheLeuLeuSerLysGlnGluLeuPheS : 289 !|||!!:! !|||:!!||| !|||:!!!:!! !:!!!!!:!! :!!:!! . eSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMet---A 3165039 : AAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATG---G : 3165092 290 : erProGluPheIleAlaValPheSerTyrPheCysCysValLeuAlaGlnAsnPhe : 307 .. :::|||::: :::.!. !|||! !! !|||..!:!!.!!|||! ||| spThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePhe 3165093 : AcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTT : 3165146 308 : PheTyrCysTrpTyrGly : 313 !:!||||||||||||||| TyrTyrCysTrpTyrGly 3165147 : TACTATTGCTGGTACGGC : 3165166 vulgar: NvOr113 251 313 . KQ414646.1 3164983 3165166 + 106 M 36 108 G 1 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164984 3165166 106 + . gene_id 3 ; sequence NvOr113 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164984 3165166 . + . KQ414646.1 exonerate:protein2genome:local exon 3164984 3165166 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3164984 3165166 106 + . alignment_id 3 ; Query NvOr113 ; Align 3164984 252 108 ; Align 3165092 289 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr113 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 255 -> 313 Target range: 3153468 -> 3153639 256 : LeuAsnAspThrPheCysGluThrValPhePheGlnPheLeuSerSerIleLeuVa : 274 :!!|||!!:! !.!! ! .!...! ! !.!.|||||| !! !|||! ! !!. ValAsnGluLysLeuGlyAsnValSerSerIleGlnPheAlaIleSerThrGlyAl 3153469 : GTGAACGAGAAGCTTGGAAATGTCTCGAGTATACAGTTCGCGATAAGCACAGGAGC : 3153523 275 : lLeuCysThrAsnIlePheLeuLeuSerLysGlnGluLeuPheSerProGluPheI : 293 !:!!||| !|||:!!!:!! !:!!||| ! !|||||| .!!|||:!!|||: aIleCysPheAsnLeuTyrArgMetSerValIleGluLeu---GlyProLysPheV 3153524 : GATATGCTTCAATCTCTATCGAATGTCGGTGATAGAACTC---GGTCCAAAGTTTG : 3153577 294 : leAlaValPheSerTyrPheCysCysValLeuAlaGlnAsnPhePheTyrCysTrp : 311 !:! !!.!!!.!!! ! |||:!!|||||||||! |||!:!||||||||| alGluAlaLeuThrIleThrValCysLeuLeuAlaGlnIlePheTyrTyrCysTrp 3153578 : TGGAAGCGTTAACTATCACAGTATGCTTACTCGCGCAGATATTTTACTATTGTTGG : 3153631 312 : TyrGly : 313 |||||| TyrGly 3153632 : TAcggt : 3153639 vulgar: NvOr113 255 313 . KQ414646.1 3153468 3153639 + 100 M 32 96 G 1 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153469 3153639 100 + . gene_id 4 ; sequence NvOr113 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153469 3153639 . + . KQ414646.1 exonerate:protein2genome:local exon 3153469 3153639 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3153469 3153639 100 + . alignment_id 4 ; Query NvOr113 ; Align 3153469 256 96 ; Align 3153565 289 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr124 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 239 -> 297 Target range: 3155838 -> 3156012 240 : ValValValValProLeuPheIlePheSerLeuIleThrLeuCysThrSerLeuPh : 258 :!!!.!:!! !! !!! !||| ! ||| !:!:.!!:!!||| !!:!|||!: MetAlaIlePheThrGlnPheAlaValSerThrLeuAlaIleCysPheAsnLeuTy 3155839 : ATGGCGATTTTCACTCAATTCGCGGTGAGTACGCTGGCGATATGCTTCAATCTTTA : 3155893 259 : eLeuMetProGluLysGluIleMetSerPheGluPheIleThrLeuPheIleTyrL : 277 !|||:!: !!! !..!!!::!:! ! !!.!!..!!:!:!: !:!!.!!!!:||| rLeuLeuThrGlySerAspValThrProIleArgTyrValGluIleIleMetTyrS 3155894 : CCTATTAACAGGATCAGATGTGACGCCGATTAGGTATGTGGAAATAATCATGTACA : 3155950 278 : euThrCysMetLeuThrGlnIlePheLeuTyrCysTrpPheGlyAsnGluLeuGln : 295 !!:!|||||||||||||||||||||:!!|||||||||!:!|||||||||:!!:!! erSerCysMetLeuThrGlnIlePheIleTyrCysTrpTyrGlyAsnGluValLys 3155951 : GCAGTTGCATGCTCACGCAAATATTCATTTACTGCTGGTACGGGAACGAAGTTAAG : 3156004 296 : LeuLys : 297 |||||| LeuLys 3156005 : CTGAAG : 3156012 vulgar: NvOr124 239 297 . KQ414646.1 3155838 3156012 + 144 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155839 3156012 144 + . gene_id 1 ; sequence NvOr124 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155839 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155839 3156012 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155839 3156012 144 + . alignment_id 1 ; Query NvOr124 ; Align 3155839 240 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr124 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 245 -> 301 Target range: 3178435 -> 3178603 246 : PheIlePheSerLeuIleThrLeuCysThrSerLeuPheLeuMetProGluLysGl : 264 ||| !.!!|||! !! ..!|||||| !|||:!!!:! !||| !! !! .! PheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrIleAs 3178436 : TTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGATTAA : 3178490 265 : uIleMetSerPheGluPheIleThrLeuPheIleTyrLeuThrCysMetLeuThrG : 283 . !.!.|||.!..!.|||:!! !! ! ! !|||||| !||||||||||||| nProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeuThrG 3178491 : TCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACGC : 3178547 284 : lnIlePheLeuTyrCysTrpPheGlyAsnGluLeuGlnLeuLysSerLysThrIle : 301 ||:!:!:!||||||||||||||||||||||||:!! !|||||| ! |||:!: lnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLysValGlyThrVal 3178548 : AGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAGGTTGGCACCGTG : 3178601 vulgar: NvOr124 245 301 . KQ414646.1 3178435 3178603 + 138 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178436 3178603 138 + . gene_id 2 ; sequence NvOr124 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178436 3178603 . + . KQ414646.1 exonerate:protein2genome:local exon 3178436 3178603 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178436 3178603 138 + . alignment_id 2 ; Query NvOr124 ; Align 3178436 246 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr124 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 245 -> 297 Target range: 3180511 -> 3180667 246 : PheIlePheSerLeuIleThrLeuCysThrSerLeuPheLeuMetProGluLysGl : 264 |||.!! |||!!!!!:..!:!!||| !||||||.!!! !:!! !.!. !!! PhePheGlySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAs 3180512 : TTTTTCGGAAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGA : 3180566 265 : uIleMetSerPheGluPheIleThrLeuPheIleTyrLeuThrCysMetLeuThrG : 283 :|||:!:||| !||||||:!!.!! !......||||||::: :::||| !| pIleLeuSerThrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuG 3180567 : TATTCTCAGCACCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGC : 3180623 284 : lnIlePheLeuTyrCysTrpPheGlyAsnGluLeuGlnLeuLys : 297 ||! !|||||||||||||||!:!|||||||||:!!::! !||| lnSerPheLeuTyrCysTrpTyrGlyAsnGluValArgThrLys 3180624 : AGAGCTTTCTTTACTGTTGGTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: NvOr124 245 297 . KQ414646.1 3180511 3180667 + 125 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180512 3180667 125 + . gene_id 3 ; sequence NvOr124 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180512 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180512 3180667 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180512 3180667 125 + . alignment_id 3 ; Query NvOr124 ; Align 3180512 246 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr124 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 245 -> 297 Target range: 3150652 -> 3150808 246 : PheIlePheSerLeuIleThrLeuCysThrSerLeuPheLeuMetProGluLysGl : 264 .!!:!!! ||| !:!:..!:!!||| !! !|||!:! !:!! !!.!.! ! LeuLeuSerSerThrLeuValValCysPheIleLeuTyrGluLeuAlaAsnThrPr 3150653 : CTTTTATCGAGCACGCTGGTAGTGTGTTTCATCCTGTACGAATTGGCGAACACGCC : 3150707 265 : uIleMetSerPheGluPheIleThrLeuPheIleTyrLeuThrCysMetLeuThrG : 283 !!!:|||! !:!!!:!:!: !!!! !!:!:||||||.!!||||||:!!|||| oProIleSerSerLysTyrLeuGlnPheValLeuTyrLeuAlaCysMetMetThrG 3150708 : TCCAATCAGCTCCAAGTACCTGCAATTTGTCCTGTACCTGGCCTGTATGATGACGC : 3150764 284 : lnIlePheLeuTyrCysTrpPheGlyAsnGluLeuGlnLeuLys : 297 ||||||||!!!|||||||||!:!|||.!.:!!|||:!!|||||| lnIlePhePheTyrCysTrpTyrGlyGluGlnLeuLysLeuLys 3150765 : AGATCTTCTTTTACTGCTGGTACGGCGAGCAGTTGAAACTGAAG : 3150808 vulgar: NvOr124 245 297 . KQ414646.1 3150652 3150808 + 119 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150653 3150808 119 + . gene_id 4 ; sequence NvOr124 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150653 3150808 . + . KQ414646.1 exonerate:protein2genome:local exon 3150653 3150808 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150653 3150808 119 + . alignment_id 4 ; Query NvOr124 ; Align 3150653 246 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr124 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 231 -> 297 Target range: 3164989 -> 3165184 232 : LysLysMetGlnSerPheSerIleValValValValProLeuPheIlePheSerLe : 250 ||||||:!!.!...! ! !! !:!!:!!:!!:!! !!! !||| !.!.|||:! LysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMe 3164990 : AAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCAT : 3165044 251 : uIleThrLeuCysThrSerLeuPheLeuMetProGluLysGluIleMetSerPheG : 269 ! ..!:!!||| !!:!|||!:!! !||| !!:!!! :!! |||... : tSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---MetAspThrL 3165045 : GTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---ATGGAcacga : 3165098 270 : luPheIleThrLeuPheIleTyrLeuThrCysMetLeuThrGlnIlePheLeuTyr : 287 ::|||::: :::.!.:!!|||! ! !|||! :!!||||||||||||! !||| ysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyr 3165099 : aattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTAT : 3165152 288 : CysTrpPheGlyAsnGluLeuGlnLeuLys : 297 ||||||!:!|||||||||:!!:!!! !||| CysTrpTyrGlyAsnGluValLysHisLys 3165153 : TGCTGGTACGGCAACGAAGTGAAACATAAG : 3165184 vulgar: NvOr124 231 297 . KQ414646.1 3164989 3165184 + 117 M 33 99 G 1 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164990 3165184 117 + . gene_id 5 ; sequence NvOr124 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164990 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164990 3165184 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3164990 3165184 117 + . alignment_id 5 ; Query NvOr124 ; Align 3164990 232 99 ; Align 3165089 266 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr124 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 231 -> 297 Target range: 3158461 -> 3158656 232 : LysLysMetGlnSerPheSerIleValValValValProLeuPheIlePheSerLe : 250 ||||||:!!.!...! ! !! !:!!:!!:!!:!! !!! !||| !.!.|||:! LysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMe 3158462 : AAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCAT : 3158516 251 : uIleThrLeuCysThrSerLeuPheLeuMetProGluLysGluIleMetSerPheG : 269 ! ..!:!!||| !!:!|||!:!! !||| !!:!!! :!! |||... : tSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---MetAspThrL 3158517 : GTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---ATGGAcacga : 3158570 270 : luPheIleThrLeuPheIleTyrLeuThrCysMetLeuThrGlnIlePheLeuTyr : 287 ::|||::: :::.!.:!!|||! ! !|||! :!!||||||||||||! !||| ysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyr 3158571 : aattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTAT : 3158624 288 : CysTrpPheGlyAsnGluLeuGlnLeuLys : 297 ||||||!:!|||||||||:!!:!! !||| CysTrpTyrGlyAsnGluValLysAspLys 3158625 : TGTTGGTACGGCAACGAAGTGAAAGATAAG : 3158656 vulgar: NvOr124 231 297 . KQ414646.1 3158461 3158656 + 116 M 33 99 G 1 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158462 3158656 116 + . gene_id 6 ; sequence NvOr124 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158462 3158656 . + . KQ414646.1 exonerate:protein2genome:local exon 3158462 3158656 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3158462 3158656 116 + . alignment_id 6 ; Query NvOr124 ; Align 3158462 232 99 ; Align 3158561 266 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr110 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 246 Query range: 257 -> 395 Target range: 3155796 -> 3156416 258 : AspIleLeuArgPheAlaAspLeuLeuSerArgThrPheIleGluIleValPheIl : 276 |||! !! !||||||.!!! !:!!:!!!:!..! !||| ! :!!|||! AspAsnCysArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheTh 3155797 : GATAATTGCAGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCAC : 3155851 277 : eGlnPheCysValGlyLeuThrValIleCysSerThrValTyrLeuLeuAlaLysL : 295 !||||||...|||.!! ! !!.!||||||! !!.!:!!|||||||||.!! !! rGlnPheAlaValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlyS 3155852 : TCAATTCGCGGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGAT : 3155908 296 : euSerIlePheSerTyrAspPhePheGlyLeuPheLeuTyrLeuGlyCysMetLeu : 313 !..!:!: !! ! !:! ! ! !:!!.!!:!!||| !.!!||||||||| erAspValThrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeu 3155909 : CAGATGTGACGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTC : 3155962 314 : MetGlnMetPheLeuPheCysTrpTyrGlyAsnGluValValLeuAsp >>>> T : 330 ! !|||!!:|||:!!!:!||||||||||||||||||||| !||| ! ThrGlnIlePheIleTyrCysTrpTyrGlyAsnGluValLysLeuLys++ 3155963 : ACGCAAATATTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAGgt...... : 3156015 331 : arget Intron 1 >>>> SerThrLysLeuPheHisThrIleTyrAsnIleAs : 341 73 bp ||| !:!!:!!! !:!!! !|||!:!:!!:!!:! ++SerLeuGluIleSerAsnMetIlePheHisLeuAs 3156016 : ...................agAGCCTCGAGATTTCTAATATGATTTTTCACCTCGA : 3156119 342 : nTrpIleGluLeuGlnIleGlnThrGlnSerLysLeuLeuLeuMetMetLeuValA : 360 !|||! ! !!!!.!.! ! |||:!! !!!!.:!!||| !||||||:!! !| pTrpThrProPheAspLysAlaThrLysArgAsnIleLeuThrMetMetMetArgA 3156120 : CTGGACACCGTTCGATAAAGCTACAAAACGAAATATACTAACTATGATGATGCGTG : 3156176 361 : laSerSerProIleGlnLeuPheArgGlyAlaIleIleLysValAsnLeuAspAla : 378 ||||||||||||||:!!:!!.!!!!!! ! !:!::!!...||||||||||||:!! laSerSerProIleGluIleIleSerValArgValLeuSerValAsnLeuAspSer 3156177 : CGTCGTCGCCAATTGAAATCATCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCG : 3156230 379 : PheIleAsn >>>> Target Intron 2 >>>> IleLeuLysPheSerTyr : 387 |||:!! ! 133 bp :!:|||||| !|||||| PheValAla++ ++LeuLeuLysThrSerTyr 3156231 : TTCGTCGCTgt.........................agTTGCTGAAAACTTCTTAC : 3156390 388 : SerAlaPheAsnLeuLeuGlnLys : 395 ||||||!:!|||:!!||||||::: SerAlaTyrAsnValLeuGlnArg 3156391 : TCGGCGTACAACGTTCTCCAACGC : 3156416 vulgar: NvOr110 257 395 . KQ414646.1 3155796 3156416 + 246 M 72 216 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 129 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155797 3156416 246 + . gene_id 1 ; sequence NvOr110 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3155797 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155797 3156012 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156013 3156014 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156013 3156085 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3156084 3156085 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156086 3156241 . + . KQ414646.1 exonerate:protein2genome:local exon 3156086 3156241 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156242 3156243 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156242 3156374 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3156373 3156374 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156375 3156416 . + . KQ414646.1 exonerate:protein2genome:local exon 3156375 3156416 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155797 3156416 246 + . alignment_id 1 ; Query NvOr110 ; Align 3155797 258 216 ; Align 3156086 330 156 ; Align 3156375 382 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr110 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 258 -> 334 Target range: 3178378 -> 3178606 259 : IleLeuArgPheAlaAspLeuLeuSerArgThrPheIleGluIleValPheIleGl : 277 ||| ||||||.!!.!. !:!!!:!! !..!||| ! !!::!!|||:!:|| IleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLeuGl 3178379 : atttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCTGCA : 3178433 278 : nPheCysValGlyLeuThrValIleCysSerThrValTyrLeuLeuAlaLysLeuS : 296 ||||! !:!!.!!! !||||||:!:|||! !!:!:!!||| !:!!:!!! !:!!! nPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrIleA 3178434 : ATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGATTA : 3178490 297 : erIlePheSerTyrAspPhePheGlyLeuPheLeuTyrLeuGlyCysMetLeuMet : 314 :! !|||||| :!!||| !! !!! ! !! !|||||| !!|||||||||! ! snProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeuThr 3178491 : ATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACG : 3178544 315 : GlnMetPheLeuPheCysTrpTyrGlyAsnGluValValLeuAspSerThrLysLe : 333 |||:!!!:!|||!:!||||||!:!||||||||||||..!||| ! ! !! :! GlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLysValGlyThrVa 3178545 : CAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAGGTTGGCACCGT : 3178601 334 : uPhe : 334 !||| lPhe 3178602 : GTTT : 3178606 vulgar: NvOr110 258 334 . KQ414646.1 3178378 3178606 + 165 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178379 3178606 165 + . gene_id 2 ; sequence NvOr110 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178379 3178606 . + . KQ414646.1 exonerate:protein2genome:local exon 3178379 3178606 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178379 3178606 165 + . alignment_id 2 ; Query NvOr110 ; Align 3178379 259 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr110 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 260 -> 326 Target range: 3158452 -> 3158647 261 : ArgPheAlaAspLeuLeuSerArgThrPheIleGluIleValPheIleGlnPheCy : 279 ||||||:!! ! !:!!!:!..! !|||! ! !|||:!!.!! !|||||||| ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3158453 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3158507 280 : sValGlyLeuThrValIleCysSerThrValTyrLeuLeuAlaLysLeuSerIleP : 298 |:!!.!!:!!:!!|||||||||! !!.!:!!|||! !:!!.!!:!!:!!!.!!!: sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMet- 3158508 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATG- : 3158564 299 : heSerTyrAspPhePheGlyLeuPheLeuTyrLeuGlyCysMetLeuMetGlnMet : 316 ... ||| :::.!.||||||! ! !|||! :!!! !|||!!: --AspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 3158565 : --GAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 3158615 317 : PheLeuPheCysTrpTyrGlyAsnGluVal : 326 |||! !!:!||||||||||||||||||||| PheTyrTyrCysTrpTyrGlyAsnGluVal 3158616 : TTTTACTATTGTTGGTACGGCAACGAAGTG : 3158647 vulgar: NvOr110 260 326 . KQ414646.1 3158452 3158647 + 127 M 37 111 G 1 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158453 3158647 127 + . gene_id 3 ; sequence NvOr110 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158453 3158647 . + . KQ414646.1 exonerate:protein2genome:local exon 3158453 3158647 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3158453 3158647 127 + . alignment_id 3 ; Query NvOr110 ; Align 3158453 261 111 ; Align 3158564 299 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr110 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 260 -> 326 Target range: 3164980 -> 3165175 261 : ArgPheAlaAspLeuLeuSerArgThrPheIleGluIleValPheIleGlnPheCy : 279 ||||||:!! ! !:!!!:!..! !|||! ! !|||:!!.!! !|||||||| ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3164981 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3165035 280 : sValGlyLeuThrValIleCysSerThrValTyrLeuLeuAlaLysLeuSerIleP : 298 |:!!.!!:!!:!!|||||||||! !!.!:!!|||! !:!!.!!:!!:!!!.!!!: sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMet- 3165036 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATG- : 3165092 299 : heSerTyrAspPhePheGlyLeuPheLeuTyrLeuGlyCysMetLeuMetGlnMet : 316 ... ||| :::.!.||||||! ! !|||! :!!! !|||!!: --AspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 3165093 : --GAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 3165143 317 : PheLeuPheCysTrpTyrGlyAsnGluVal : 326 |||! !!:!||||||||||||||||||||| PheTyrTyrCysTrpTyrGlyAsnGluVal 3165144 : TTTTACTATTGCTGGTACGGCAACGAAGTG : 3165175 vulgar: NvOr110 260 326 . KQ414646.1 3164980 3165175 + 127 M 37 111 G 1 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164981 3165175 127 + . gene_id 4 ; sequence NvOr110 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164981 3165175 . + . KQ414646.1 exonerate:protein2genome:local exon 3164981 3165175 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3164981 3165175 127 + . alignment_id 4 ; Query NvOr110 ; Align 3164981 261 111 ; Align 3165092 299 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr110 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 261 -> 326 Target range: 3180463 -> 3180658 262 : PheAlaAspLeuLeuSerArgThrPheIleGluIleValPheIleGlnPheCysVa : 280 !!.|||!!::!!:!!!:! !!:!.!. !! :!!||| !||||||! !! LeuAlaGluIleMetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePheGl 3180464 : TTAGCTGAAATAATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTTCGG : 3180518 281 : lGlyLeuThrValIleCysSerThrValTyrLeuLeuAlaLysLeuSerIlePheS : 299 !.!!!!!! !||||||||| !!:!:!! !! !||| !!!. !..!|||.!!| ySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleLeuS 3180519 : AAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTCTCA : 3180575 300 : erTyrAspPhePheGlyLeuPheLeuTyrLeuGlyCysMetLeuMetGlnMetPhe : 317 || !!!:|||!!.!.! !......||||||... :::|||:!!|||! ||| erThrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPhe 3180576 : GCACCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGCTTT : 3180629 318 : LeuPheCysTrpTyrGlyAsnGluVal : 326 |||!:!||||||||||||||||||||| LeuTyrCysTrpTyrGlyAsnGluVal 3180630 : CTTTACTGTTGGTACGGAAACGAAGTG : 3180658 vulgar: NvOr110 261 326 . KQ414646.1 3180463 3180658 + 125 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180464 3180658 125 + . gene_id 5 ; sequence NvOr110 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180464 3180658 . + . KQ414646.1 exonerate:protein2genome:local exon 3180464 3180658 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180464 3180658 125 + . alignment_id 5 ; Query NvOr110 ; Align 3180464 262 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr110 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 259 -> 382 Target range: 3160720 -> 3162713 260 : LeuArgPheAlaAspLeuLeuSerArgThrPheIleGluIleValPheIleGlnPh : 278 !!!|||||||||!!::!!:!!!:! !! !|||! ! ! :!! !! ||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3160721 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3160775 279 : eCysValGlyLeuThrValIleCysSerThrValTyrLeuLeuAlaLysLeuSerI : 297 | ||| ! !! !..!!!:|||! !!.!:!!!:!! !|||.!!:!! !!.!: eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3160776 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3160832 298 : lePheSerTyrAspPhePheGlyLeuPheLeuTyrLeuGlyCysMetLeuMetGln : 315 !:!:!||| .!. !!!!.!.!|||.!.! !!:!:!!! ! !!:!!!!! ||| alTyrSer---GlnValLeuAlaLeuIleProPheMetValSerValPheAlaGln 3160833 : TGTATTCG---CAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAG : 3160883 316 : MetPheLeuPheCysTrpTyrGlyAsnGluValVal >>>> Target Intron : 328 !!:|||! !! !||||||||||||||||||..! ! 1627 bp IlePheTyrCysCysTrpTyrGlyAsnGluThrLys++ 3160884 : ATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAgt.................. : 3160924 329 : 1 >>>> LeuAspSerThrLysLeuPheHisThrIleTyrAsnIleAsnTrpIl : 343 ! ! ..! !!::: ||| :::.!.:!::!!|||! -+ArgLysGluProArgAspPhe***TyrHisPheGlnLeuAspTrpTh 3160925 : .......ggAGAAAAGAGCCTCgagatttttaatatcatttcCAACTGGACTGGAC : 3162594 344 : eGluLeuGlnIleGlnThrGlnSerLysLeuLeuLeuMetMetLeuValAlaSerS : 362 ! !!!!.!.! ! .!!:!! !!!!. !||| !||||||:!! !||||||| rProPheAspLysAlaAlaLysArgAsnThrLeuThrMetMetMetArgAlaSerS 3162595 : ACCATTCGATAAAGCTGCTAAACGAAATACTCTAACCATGATGATGCGTGCATCGT : 3162651 363 : erProIleGlnLeuPheArgGlyAlaIleIleLysValAsnLeuAspAlaPheIle : 380 ||! !|||:!!:!!.!!!!!! ! !:!::!!...||||||||||||:!!|||:!! erLeuIleGluIleIleSerValArgValLeuSerValAsnLeuAspSerPheVal 3162652 : CTCTGATCGAAATCATCAGCGTTCGTGTGCTCTCCGTGAATCTAGATTCGTTCGTC : 3162705 381 : AsnIle : 382 !::: AlaVal 3162706 : GCTGtc : 3162713 vulgar: NvOr110 259 382 . KQ414646.1 3160720 3162713 + 112 M 40 120 G 1 0 M 27 81 5 0 2 I 0 1623 3 0 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160721 3162713 112 + . gene_id 6 ; sequence NvOr110 ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3160721 3160921 . + . KQ414646.1 exonerate:protein2genome:local exon 3160721 3160921 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3160922 3160923 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3160922 3162548 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3162547 3162548 . + . intron_id 0 ; splice_site "GG" KQ414646.1 exonerate:protein2genome:local cds 3162549 3162713 . + . KQ414646.1 exonerate:protein2genome:local exon 3162549 3162713 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160721 3162713 112 + . alignment_id 6 ; Query NvOr110 ; Align 3160721 260 120 ; Align 3160841 301 81 ; Align 3162549 328 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr109PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 237 Query range: 127 -> 261 Target range: 3155805 -> 3156413 128 : LysPheAlaGluLeuLeuSerGluThrPheLeuGlnValLeuPheIleGlnPheCy : 146 !:!|||.!!! :!!:!!!:!||| !||| !..!!.!:!!|||! !||||||.. ArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAl 3155806 : AGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGC : 3155860 147 : sAlaSerLeuSerValIleGlyThrSerIleTyrLeuLeuThrThrIleLysValT : 165 .!.!||| ! !!.!||| !! !!:!:!!|||||||||||| ! ! ! ||| aValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValT 3155861 : GGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGA : 3155917 166 : yrSerAlaAspPheValIleThrThrLeuTyrLeuIleCysLeuLeuAsnGlnMet : 183 !! ! !:!||| !! !! !:!!||| !! !|||:!!|||!..|||!!: hrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIle 3155918 : CGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATA : 3155971 184 : LeuLeuTyrCysTrpTyrSerAsnGlnValLeuLeuAsn >>>> Target Int : 197 !!!:!!||||||||||||.!!|||:!!||| !|||!!. 73 bp PheIleTyrCysTrpTyrGlyAsnGluValLysLeuLys++ 3155972 : TTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAGgt............... : 3156015 198 : ron 1 >>>> SerArgGluLeuPheArgSerIleTyrAsnMetAspTrpIleSe : 211 |||! !|||:!!! !!.!! !|||!:!:!!:!:||||||! ! ! ++SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrPr 3156016 : ..........agAGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACC : 3156128 212 : rLeuHisSerLysThrGlnLysThrLeuLeuLeuMetMetLeuMetAlaSerSerP : 230 !!!! !!!.! |||:!!::!!.!:!!||| !||||||:!! |||||||||| oPheAspLysAlaThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerP 3156129 : GTTCGATAAAGCTACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGC : 3156185 231 : roIleGlnLeuPheLysGlyAlaIleIleLysValAsnLeuAspAlaPheLeuAsn : 248 |||||:!!:!!.!!!..! ! !:!::!!...||||||||||||:!!|||:!! ! roIleGluIleIleSerValArgValLeuSerValAsnLeuAspSerPheValAla 3156186 : CAATTGAAATCATCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCT : 3156239 249 : >>>> Target Intron 2 >>>> ValLeuLysPheSerTyrSerAlaPhe : 257 133 bp :!!|||||| !||||||||||||!:! ++ ++LeuLeuLysThrSerTyrSerAlaTyr 3156240 : gt.........................agTTGCTGAAAACTTCTTACTCGGCGTAC : 3156399 258 : AsnIleLeuLys : 261 |||:!!|||:!! AsnValLeuGln 3156400 : AACGTTCTCCAA : 3156413 vulgar: NvOr109PSE 127 261 . KQ414646.1 3155805 3156413 + 237 M 69 207 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 129 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155806 3156413 237 + . gene_id 1 ; sequence NvOr109PSE ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3155806 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155806 3156012 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156013 3156014 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156013 3156085 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3156084 3156085 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156086 3156241 . + . KQ414646.1 exonerate:protein2genome:local exon 3156086 3156241 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156242 3156243 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156242 3156374 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3156373 3156374 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156375 3156413 . + . KQ414646.1 exonerate:protein2genome:local exon 3156375 3156413 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155806 3156413 237 + . alignment_id 1 ; Query NvOr109PSE ; Align 3155806 128 207 ; Align 3156086 197 156 ; Align 3156375 249 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr109PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 127 -> 193 Target range: 3158452 -> 3158647 128 : LysPheAlaGluLeuLeuSerGluThrPheLeuGlnValLeuPheIleGlnPheCy : 146 !:!|||:!!:!! !:!!!:!||| !||| !! !:!!|||.!! !|||||||| ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3158453 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3158507 147 : sAlaSerLeuSerValIleGlyThrSerIleTyrLeuLeuThrThrIleLysValT : 165 | !|||:!!||||||||| !! !!:!:!!|||! !:!!||| !||||||:!! sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMet- 3158508 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATG- : 3158564 166 : yrSerAlaAspPheValIleThrThrLeuTyrLeuIleCysLeuLeuAsnGlnMet : 183 ...... |||||| !||||||! !.!!||| !:!!!..|||!!: --AspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 3158565 : --GAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 3158615 184 : LeuLeuTyrCysTrpTyrSerAsnGlnVal : 193 !!!! !||||||||||||.!!|||:!!||| PheTyrTyrCysTrpTyrGlyAsnGluVal 3158616 : TTTTACTATTGTTGGTACGGCAACGAAGTG : 3158647 vulgar: NvOr109PSE 127 193 . KQ414646.1 3158452 3158647 + 133 M 37 111 G 1 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158453 3158647 133 + . gene_id 2 ; sequence NvOr109PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158453 3158647 . + . KQ414646.1 exonerate:protein2genome:local exon 3158453 3158647 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3158453 3158647 133 + . alignment_id 2 ; Query NvOr109PSE ; Align 3158453 128 111 ; Align 3158564 166 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr109PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 127 -> 193 Target range: 3164980 -> 3165175 128 : LysPheAlaGluLeuLeuSerGluThrPheLeuGlnValLeuPheIleGlnPheCy : 146 !:!|||:!!:!! !:!!!:!||| !||| !! !:!!|||.!! !|||||||| ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3164981 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3165035 147 : sAlaSerLeuSerValIleGlyThrSerIleTyrLeuLeuThrThrIleLysValT : 165 | !|||:!!||||||||| !! !!:!:!!|||! !:!!||| !||||||:!! sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMet- 3165036 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATG- : 3165092 166 : yrSerAlaAspPheValIleThrThrLeuTyrLeuIleCysLeuLeuAsnGlnMet : 183 ...... |||||| !||||||! !.!!||| !:!!!..|||!!: --AspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 3165093 : --GAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 3165143 184 : LeuLeuTyrCysTrpTyrSerAsnGlnVal : 193 !!!! !||||||||||||.!!|||:!!||| PheTyrTyrCysTrpTyrGlyAsnGluVal 3165144 : TTTTACTATTGCTGGTACGGCAACGAAGTG : 3165175 vulgar: NvOr109PSE 127 193 . KQ414646.1 3164980 3165175 + 133 M 37 111 G 1 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164981 3165175 133 + . gene_id 3 ; sequence NvOr109PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164981 3165175 . + . KQ414646.1 exonerate:protein2genome:local exon 3164981 3165175 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3164981 3165175 133 + . alignment_id 3 ; Query NvOr109PSE ; Align 3164981 128 111 ; Align 3165092 166 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr109PSE Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 127 -> 193 Target range: 3180460 -> 3180658 128 : LysPheAlaGluLeuLeuSerGluThrPheLeuGlnValLeuPheIleGlnPheCy : 146 !..!!.||||||:!!:!!!:!!!:!:!.!.! !! !..!:!!||| !||||||! SerLeuAlaGluIleMetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePh 3180461 : AGTTTAGCTGAAATAATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTT : 3180515 147 : sAlaSerLeuSerValIleGlyThrSerIleTyrLeuLeuThrThrIleLysValT : 165 !!.!|||!!!! !|||||| !! !|||:!: !! !||| !!.! ! ! :!! eGlySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleL 3180516 : CGGAAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTC : 3180572 166 : yrSerAlaAspPheValIleThrThrLeuTyrLeuIleCysLeuLeuAsnGlnMet : 183 !|||.!!!!:|||:!! |||! ...|||||| ::!||| |||! euSerThrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSer 3180573 : TCAGCACCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGCAGAGC : 3180626 184 : LeuLeuTyrCysTrpTyrSerAsnGlnVal : 193 !!!|||||||||||||||.!!|||:!!||| PheLeuTyrCysTrpTyrGlyAsnGluVal 3180627 : TTTCTTTACTGTTGGTACGGAAACGAAGTG : 3180658 vulgar: NvOr109PSE 127 193 . KQ414646.1 3180460 3180658 + 123 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180461 3180658 123 + . gene_id 4 ; sequence NvOr109PSE ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180461 3180658 . + . KQ414646.1 exonerate:protein2genome:local exon 3180461 3180658 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180461 3180658 123 + . alignment_id 4 ; Query NvOr109PSE ; Align 3180461 128 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr122 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 255 -> 300 Target range: 3178456 -> 3178591 256 : IleCysAlaSerValPheGlnLeuSerGluTyrSerValPheSerLeuGluPheLe : 274 :!:||| !|||:!!!:!:!!:!!||| ! !!:! !||||||:!!.!.|||:! LeuCysLeuSerIleTyrLysMetSerThrIleAsnProPheSerMetAsnPheVa 3178457 : CTGTGTTTGAGCATCTATAAAATGTCGACGATTAATCCATTTAGCATGAACTTCGT : 3178511 275 : uGlyLeuPheSerPheAlaIleCysIleLeuLeuGlnValLeuValTyrCysTrpP : 293 ! !!! ! !|||!:! ! !|||!!:||| !||||||! !:!!|||||||||| lTrpCysAlaSerTyrLeuCysCysMetLeuThrGlnValTyrLeuTyrCysTrpP 3178512 : CTGGTGCGCCTCCTATTTATGCTGTATGCTCACGCAGGTGTATTTATACTGTTGGT : 3178568 294 : heGlyAsnGluLeuMetLeuLys : 300 |||||||||||:!!! !|||||| heGlyAsnGluValThrLeuLys 3178569 : TCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: NvOr122 255 300 . KQ414646.1 3178456 3178591 + 124 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178457 3178591 124 + . gene_id 1 ; sequence NvOr122 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178457 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178457 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178457 3178591 124 + . alignment_id 1 ; Query NvOr122 ; Align 3178457 256 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr122 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 248 -> 300 Target range: 3180511 -> 3180667 249 : LeuPhePheSerLeuLeuSerIleCysAlaSerValPheGlnLeuSerGluTyrSe : 267 !!!||| |||!!!:!! !|||||| !|||:!!.!!||||||! !.!. .. PhePheGlySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAs 3180512 : TTTTTCGGAAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGA : 3180566 268 : rValPheSerLeuGluPheLeuGlyLeuPheSerPheAlaIleCysIleLeuLeuG : 286 !:!!.!!||| !|||||||||!.! !... ::: |||||||||| pIleLeuSerThrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuG 3180567 : TATTCTCAGCACCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGC : 3180623 287 : lnValLeuValTyrCysTrpPheGlyAsnGluLeuMetLeuLys : 300 || !!!!:!!|||||||||!:!|||||||||:!!! !||| lnSerPheLeuTyrCysTrpTyrGlyAsnGluValArgThrLys 3180624 : AGAGCTTTCTTTACTGTTGGTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: NvOr122 248 300 . KQ414646.1 3180511 3180667 + 113 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180512 3180667 113 + . gene_id 2 ; sequence NvOr122 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180512 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180512 3180667 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180512 3180667 113 + . alignment_id 2 ; Query NvOr122 ; Align 3180512 249 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr122 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 251 -> 300 Target range: 3155865 -> 3156012 252 : SerLeuLeuSerIleCysAlaSerValPheGlnLeuSerGluTyrSerValPheSe : 270 ||| !|||:!!|||||| !!:!:!!!:!! !|||!!!! !! ..!||| ! SerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValThrPr 3155866 : AGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGACGCC : 3155920 271 : rLeuGluPheLeuGlyLeuPheSerPheAlaIleCysIleLeuLeuGlnValLeuV : 289 !:!!..!!:!:!!! !:!!.!!! !!:!::!! !|||!!:||| !|||:!!!!!: oIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIlePheI 3155921 : GATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCA : 3155977 290 : alTyrCysTrpPheGlyAsnGluLeuMetLeuLys : 300 !!|||||||||!:!|||||||||:!!! !|||||| leTyrCysTrpTyrGlyAsnGluValLysLeuLys 3155978 : TTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAG : 3156012 vulgar: NvOr122 251 300 . KQ414646.1 3155865 3156012 + 111 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155866 3156012 111 + . gene_id 3 ; sequence NvOr122 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155866 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155866 3156012 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155866 3156012 111 + . alignment_id 3 ; Query NvOr122 ; Align 3155866 252 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr124 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 231 -> 297 Target range: 1946242 -> 1946047 232 : LysLysMetGlnSerPheSerIleValValValValProLeuPheIlePheSerLe : 250 ||||||:!!.!...! ! !! !:!!:!!:!!:!! !!! !||| !.!.|||:! LysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMe 1946242 : AAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCAT : 1946188 251 : uIleThrLeuCysThrSerLeuPheLeuMetProGluLysGluIleMetSerPheG : 269 ! ..!:!!||| !!:!|||!:!! !||| !!:!!! :!! |||... : tSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---MetAspThrL 1946187 : GTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---ATGGAcacga : 1946134 270 : luPheIleThrLeuPheIleTyrLeuThrCysMetLeuThrGlnIlePheLeuTyr : 287 ::|||::: :::.!.:!!|||! ! !|||! :!!||||||||||||! !||| ysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyr 1946133 : aattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTAT : 1946080 288 : CysTrpPheGlyAsnGluLeuGlnLeuLys : 297 ||||||!:!|||||||||:!!:!! !||| CysTrpTyrGlyAsnGluValLysAspLys 1946079 : TGCTGGTACGGCAACGAAGTGAAAGATAAG : 1946048 vulgar: NvOr124 231 297 . KQ414661.1 1946242 1946047 - 116 M 33 99 G 1 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946048 1946242 116 - . gene_id 1 ; sequence NvOr124 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946048 1946242 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946242 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946048 1946242 116 - . alignment_id 1 ; Query NvOr124 ; Align 1946243 232 99 ; Align 1946144 266 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr123PSE Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 222 -> 287 Target range: 1946239 -> 1946047 223 : LysIleGlnSerPhePheIleArgAlaValIleProPhePheLeuPheSerLeuIl : 241 |||:!:.!...! |||! !! ! !:!!||| !! |||! !.!.|||:!! LysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSe 1946239 : AAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTC : 1946185 242 : eSerIleCysSerThrThrPheGlnValSerGlnHisSerIlePheSerPheLysP : 260 !||||||! !!.! !!:!!:!:!!!!!||| !!.!!!: ... |||| rValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMet---AspThrLysP 1946184 : GGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATG---GAcacgaaat : 1946131 261 : heLeuGlyLeuIleThrPheAlaThrCysValLeuLeuGlnValPheLeuTyrCys : 278 ||::: :::||| !!:!:!! !|||..!:!! !|||:!!|||! !|||||| heValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCys 1946130 : tcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGC : 1946077 279 : TrpPheGlyAsnLysMetLysIleLys : 287 |||!:!||||||:!!:!!||| !||| TrpTyrGlyAsnGluValLysAspLys 1946076 : TGGTACGGCAACGAAGTGAAAGATAAG : 1946048 vulgar: NvOr123PSE 222 287 . KQ414661.1 1946239 1946047 - 103 M 33 99 G 1 0 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946048 1946239 103 - . gene_id 1 ; sequence NvOr123PSE ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946048 1946239 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946239 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946048 1946239 103 - . alignment_id 1 ; Query NvOr123PSE ; Align 1946240 223 99 ; Align 1946141 257 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr111 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 329 -> 395 Target range: 1948618 -> 1948287 330 : SerThrLysLeuPheHisThrIleTyrAsnMetAsnTrpValAlaPheGlnIleLy : 348 ||| !:!!:!!! !:!!! !|||!:!:!!:!::!!|||..! !!|||.!.! ! SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 1948618 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 1948564 349 : sThrGlnLysLysLeuLeuLeuMetMetLeuValAlaLeuSerProIleGlnLeuP : 367 |||:!!::!!!.:!!||| !||||||:!! !|||! !|||||||||:!!:!!. aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 1948563 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 1948507 368 : heGluGlyAlaIleIleLysValAsnLeuAspAlaPheIleAsn >>>> Targe : 382 !!...! ! !:!::!!...||||||||||||:!!|||:!! ! leSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 1948506 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.......... : 1948460 383 : t Intron 1 >>>> ValLeuLysPheSerTyrSerAlaPheAsnIleLeuGln : 394 133 bp :!!|||||| !||||||||||||!:!|||:!!|||||| ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGln 1948459 : ...............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAA : 1948293 395 : Lys : 395 ::: Arg 1948292 : CGC : 1948288 vulgar: NvOr111 329 395 . KQ414661.1 1948618 1948287 - 126 M 52 156 5 0 2 I 0 129 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948288 1948618 126 - . gene_id 1 ; sequence NvOr111 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1948463 1948618 . - . KQ414661.1 exonerate:protein2genome:local exon 1948463 1948618 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1948461 1948462 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1948330 1948462 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1948330 1948331 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1948288 1948329 . - . KQ414661.1 exonerate:protein2genome:local exon 1948288 1948329 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948288 1948618 126 - . alignment_id 1 ; Query NvOr111 ; Align 1948619 330 156 ; Align 1948330 382 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr111 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 256 -> 326 Target range: 1946263 -> 1946056 257 : IleAspIleLeuLysPheAlaAspLeuLeuSerLysThrPheValGluValValPh : 275 :!:.!.! !! !!:!|||:!! ! !:!!!:!:!! !||| ! !:!!:!!.! LeuGlnThrCysArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIl 1946263 : TTGCAAACTTGCAGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGAT : 1946209 276 : eIleGlnPheCysValGlyPheSerValIleCysSerIleValTyrLeuLeuAlaI : 294 ! !|||||||||:!!.!!.!.||||||||||||! !! !:!!|||! !:!!.!! eSerGlnPheCysIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrG 1946208 : TTCTCAATTCTGCATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACAC : 1946152 295 : leLeuSerIleLeuSerPheAspPhePheGlyThrLeuPheTyrLeuGlyGlyMet : 312 :!!!.! :!!... ||| :!!.!!|||! ! ! !!! lnIleLys---MetAspThrLysPheValGluIleIleLeuTyrSerPheCysThr 1946151 : AGATCAAA---ATGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACT : 1946101 313 : LeuSerGlnMetPheIleTyrCysTrpTyrGlyAsnGluVal : 326 :!!!!!|||!!:||| !|||||||||||||||||||||||| IleThrGlnIlePheTyrTyrCysTrpTyrGlyAsnGluVal 1946100 : ATCACGCAGATATTTTACTATTGCTGGTACGGCAACGAAGTG : 1946057 vulgar: NvOr111 256 326 . KQ414661.1 1946263 1946056 - 109 M 40 120 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946057 1946263 109 - . gene_id 2 ; sequence NvOr111 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946057 1946263 . - . KQ414661.1 exonerate:protein2genome:local exon 1946057 1946263 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946057 1946263 109 - . alignment_id 2 ; Query NvOr111 ; Align 1946264 257 120 ; Align 1946144 298 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr121PSE Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 230 -> 295 Target range: 1946239 -> 1946047 231 : LysIleGlnHisPhePheIleTyrValValValProLeuPheLeuPheSerLeuVa : 249 |||:!:.!..!. |||! ! :!!:!!:!! !!! !|||! !.!.|||:!! LysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSe 1946239 : AAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTC : 1946185 250 : lThrLeuCysThrSerIlePheGlnMetSerGlnLysGlnValAlaSerPheGluP : 268 !..!:!!||| !!:!:!!!:!!:!|||!!!|||! :!!:!!! ::: :::| rValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThr---LysP 1946184 : GGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacg---aaat : 1946131 269 : heLeuSerLeuThrMetTyrLeuAlaCysMetLeuCysGlnValPheLeuTyrCys : 286 ||:::...::: !:!:|||! ! !|||! :!! |||:!!|||! !|||||| heValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCys 1946130 : tcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGC : 1946077 287 : TrpPheGlyAsnGluLeuGluLeuLys : 295 |||!:!|||||||||:!!:!! !||| TrpTyrGlyAsnGluValLysAspLys 1946076 : TGGTACGGCAACGAAGTGAAAGATAAG : 1946048 vulgar: NvOr121PSE 230 295 . KQ414661.1 1946239 1946047 - 113 M 35 105 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946048 1946239 113 - . gene_id 1 ; sequence NvOr121PSE ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946048 1946239 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946239 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946048 1946239 113 - . alignment_id 1 ; Query NvOr121PSE ; Align 1946240 231 105 ; Align 1946135 267 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr113 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 251 -> 313 Target range: 1946248 -> 1946065 252 : PheIleArgGluLeuAsnAspThrPheCysGluThrValPhePheGlnPheLeuSe : 270 ||| !:!:!!:!!|||!!: !||| !! !:!!.!!! !||||||! !! PheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIl 1946248 : TTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCAT : 1946194 271 : rSerIleLeuValLeuCysThrAsnIlePheLeuLeuSerLysGlnGluLeuPheS : 289 !|||!!:! !|||:!!||| !|||:!!!:!! !:!!!!!:!! :!!:!! . eSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMet---A 1946193 : AAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATG---G : 1946140 290 : erProGluPheIleAlaValPheSerTyrPheCysCysValLeuAlaGlnAsnPhe : 307 .. :::|||::: :::.!. !|||! !! !|||..!:!!.!!|||! ||| spThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePhe 1946139 : AcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTT : 1946086 308 : PheTyrCysTrpTyrGly : 313 !:!||||||||||||||| TyrTyrCysTrpTyrGly 1946085 : TACTATTGCTGGTACGGC : 1946066 vulgar: NvOr113 251 313 . KQ414661.1 1946248 1946065 - 106 M 36 108 G 1 0 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946066 1946248 106 - . gene_id 1 ; sequence NvOr113 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946066 1946248 . - . KQ414661.1 exonerate:protein2genome:local exon 1946066 1946248 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946066 1946248 106 - . alignment_id 1 ; Query NvOr113 ; Align 1946249 252 108 ; Align 1946141 289 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr125 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 234 -> 300 Target range: 1946242 -> 1946047 235 : LysLysThrThrAsnLeuPheMetThrValIleAlaProLeuPhePhePheSerLe : 253 ||||||..!!.!.!. !|||! !:!!:!: ! !!! !|||! !.!.|||:! LysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMe 1946242 : AAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCAT : 1946188 254 : uLeuThrLeuCysAlaSerIlePheGlnMetSerGlnAsnAspIleIleSerLeuG : 272 !! !..!:!!||| !!:!:!!!:!!:!|||!!!|||! ! ! !!:... : tSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---MetAspThrL 1946187 : GTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---ATGGAcacga : 1946134 273 : luPheLeuGlyPheAlaMetTyrLeuSerCysMetLeuCysGlnValPheLeuTyr : 290 ::|||::: ... !:!:|||! !! !|||! :!! |||:!!|||! !||| ysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyr 1946133 : aattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTAT : 1946080 291 : CysTrpTyrGlyAsnGluLeuLysLeuLys : 300 ||||||||||||||||||:!!||| !||| CysTrpTyrGlyAsnGluValLysAspLys 1946079 : TGCTGGTACGGCAACGAAGTGAAAGATAAG : 1946048 vulgar: NvOr125 234 300 . KQ414661.1 1946242 1946047 - 115 M 33 99 G 1 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946048 1946242 115 - . gene_id 1 ; sequence NvOr125 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946048 1946242 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946242 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946048 1946242 115 - . alignment_id 1 ; Query NvOr125 ; Align 1946243 235 99 ; Align 1946144 269 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr118 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 258 -> 323 Target range: 1946239 -> 1946047 259 : ArgIleGlnSerValPheIleSerIleValLeuProIlePheCysSerAlaLeuLe : 277 !:!:!:.!...!! !|||! ! !|||:!!:!! !! !||||||! !::!:!!! LysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMetSe 1946239 : AAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCATGTC : 1946185 278 : uThrLeuCysPheSerThrPheGlnLeuAlaGlnLysAsnGlnThrThrGlyGluT : 296 !..!:!!||||||!:! !!:!!:!:!!.!!|||! !!...! ||| :::: rValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetAspThr---LysP 1946184 : GGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGGAcacg---aaat : 1946131 297 : yrCysPheIleIleThrTyrLeuCysCysLeuLeuValGlnIlePheCysLeuCys : 314 :: |||||| !|||! !! !||| !:!!..!|||||||||! !! !||| heValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyrCys 1946130 : tcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTATTGC : 1946077 315 : TrpPheGlyAsnGluLeuGlnPheLys : 323 |||!:!|||||||||:!!:!! !||| TrpTyrGlyAsnGluValLysAspLys 1946076 : TGGTACGGCAACGAAGTGAAAGATAAG : 1946048 vulgar: NvOr118 258 323 . KQ414661.1 1946239 1946047 - 108 M 35 105 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946048 1946239 108 - . gene_id 1 ; sequence NvOr118 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946048 1946239 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946239 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946048 1946239 108 - . alignment_id 1 ; Query NvOr118 ; Align 1946240 259 105 ; Align 1946135 295 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr110 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 260 -> 326 Target range: 1946251 -> 1946056 261 : ArgPheAlaAspLeuLeuSerArgThrPheIleGluIleValPheIleGlnPheCy : 279 ||||||:!! ! !:!!!:!..! !|||! ! !|||:!!.!! !|||||||| ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 1946251 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 1946197 280 : sValGlyLeuThrValIleCysSerThrValTyrLeuLeuAlaLysLeuSerIleP : 298 |:!!.!!:!!:!!|||||||||! !!.!:!!|||! !:!!.!!:!!:!!!.!!!: sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMet- 1946196 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATG- : 1946140 299 : heSerTyrAspPhePheGlyLeuPheLeuTyrLeuGlyCysMetLeuMetGlnMet : 316 ... ||| :::.!.||||||! ! !|||! :!!! !|||!!: --AspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 1946139 : --GAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 1946089 317 : PheLeuPheCysTrpTyrGlyAsnGluVal : 326 |||! !!:!||||||||||||||||||||| PheTyrTyrCysTrpTyrGlyAsnGluVal 1946088 : TTTTACTATTGCTGGTACGGCAACGAAGTG : 1946057 vulgar: NvOr110 260 326 . KQ414661.1 1946251 1946056 - 127 M 37 111 G 1 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946057 1946251 127 - . gene_id 1 ; sequence NvOr110 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946057 1946251 . - . KQ414661.1 exonerate:protein2genome:local exon 1946057 1946251 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946057 1946251 127 - . alignment_id 1 ; Query NvOr110 ; Align 1946252 261 111 ; Align 1946141 299 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr110 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 329 -> 395 Target range: 1948618 -> 1948287 330 : SerThrLysLeuPheHisThrIleTyrAsnIleAsnTrpIleGluLeuGlnIleGl : 348 ||| !:!!:!!! !:!!! !|||!:!:!!:!!:!!|||! ! !!!!.!.! ! SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 1948618 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 1948564 349 : nThrGlnSerLysLeuLeuLeuMetMetLeuValAlaSerSerProIleGlnLeuP : 367 |||:!! !!!!.:!!||| !||||||:!! !|||||||||||||||:!!:!!. aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 1948563 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 1948507 368 : heArgGlyAlaIleIleLysValAsnLeuAspAlaPheIleAsn >>>> Targe : 382 !!!!!! ! !:!::!!...||||||||||||:!!|||:!! ! leSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 1948506 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt.......... : 1948460 383 : t Intron 1 >>>> IleLeuLysPheSerTyrSerAlaPheAsnLeuLeuGln : 394 133 bp :!:|||||| !||||||||||||!:!|||:!!|||||| ++LeuLeuLysThrSerTyrSerAlaTyrAsnValLeuGln 1948459 : ...............agTTGCTGAAAACTTCTTACTCGGCGTACAACGTTCTCCAA : 1948293 395 : Lys : 395 ::: Arg 1948292 : CGC : 1948288 vulgar: NvOr110 329 395 . KQ414661.1 1948618 1948287 - 120 M 52 156 5 0 2 I 0 129 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948288 1948618 120 - . gene_id 2 ; sequence NvOr110 ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1948463 1948618 . - . KQ414661.1 exonerate:protein2genome:local exon 1948463 1948618 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1948461 1948462 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1948330 1948462 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1948330 1948331 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1948288 1948329 . - . KQ414661.1 exonerate:protein2genome:local exon 1948288 1948329 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948288 1948618 120 - . alignment_id 2 ; Query NvOr110 ; Align 1948619 330 156 ; Align 1948330 382 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr109PSE Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 133 Query range: 127 -> 193 Target range: 1946251 -> 1946056 128 : LysPheAlaGluLeuLeuSerGluThrPheLeuGlnValLeuPheIleGlnPheCy : 146 !:!|||:!!:!! !:!!!:!||| !||| !! !:!!|||.!! !|||||||| ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 1946251 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 1946197 147 : sAlaSerLeuSerValIleGlyThrSerIleTyrLeuLeuThrThrIleLysValT : 165 | !|||:!!||||||||| !! !!:!:!!|||! !:!!||| !||||||:!! sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMet- 1946196 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATG- : 1946140 166 : yrSerAlaAspPheValIleThrThrLeuTyrLeuIleCysLeuLeuAsnGlnMet : 183 ...... |||||| !||||||! !.!!||| !:!!!..|||!!: --AspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 1946139 : --GAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 1946089 184 : LeuLeuTyrCysTrpTyrSerAsnGlnVal : 193 !!!! !||||||||||||.!!|||:!!||| PheTyrTyrCysTrpTyrGlyAsnGluVal 1946088 : TTTTACTATTGCTGGTACGGCAACGAAGTG : 1946057 vulgar: NvOr109PSE 127 193 . KQ414661.1 1946251 1946056 - 133 M 37 111 G 1 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946057 1946251 133 - . gene_id 1 ; sequence NvOr109PSE ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946057 1946251 . - . KQ414661.1 exonerate:protein2genome:local exon 1946057 1946251 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946057 1946251 133 - . alignment_id 1 ; Query NvOr109PSE ; Align 1946252 128 111 ; Align 1946141 166 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr109PSE Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 129 Query range: 193 -> 261 Target range: 1948627 -> 1948290 194 : LeuLeuAsnSerArgGluLeuPheArgSerIleTyrAsnMetAspTrpIleSerLe : 212 |||:!! ! |||! !|||:!!! !!.!! !|||!:!:!!:!:||||||! ! !!!! LeuVal***SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPh 1948627 : CTTGTTTAGAGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTT : 1948573 213 : uHisSerLysThrGlnLysThrLeuLeuLeuMetMetLeuMetAlaSerSerProI : 231 ! !!!.! |||:!!::!!.!:!!||| !||||||:!! ||||||||||||| eAspLysAlaThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProI 1948572 : CGATAAAGCTACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAA : 1948516 232 : leGlnLeuPheLysGlyAlaIleIleLysValAsnLeuAspAlaPheLeuAsn > : 249 ||:!!:!!.!!!..! ! !:!::!!...||||||||||||:!!|||:!! ! leGluIleIleSerValArgValLeuSerValAsnLeuAspSerPheValAla++ 1948515 : TTGAAATCATCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTgt. : 1948460 250 : >>> Target Intron 1 >>>> ValLeuLysPheSerTyrSerAlaPheAsn : 258 133 bp :!!|||||| !||||||||||||!:!||| ++LeuLeuLysThrSerTyrSerAlaTyrAsn 1948459 : ........................agTTGCTGAAAACTTCTTACTCGGCGTACAAC : 1948302 259 : IleLeuLys : 261 :!!|||:!! ValLeuGln 1948301 : GTTCTCCAA : 1948291 vulgar: NvOr109PSE 193 261 . KQ414661.1 1948627 1948290 - 129 M 55 165 5 0 2 I 0 129 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948291 1948627 129 - . gene_id 2 ; sequence NvOr109PSE ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1948463 1948627 . - . KQ414661.1 exonerate:protein2genome:local exon 1948463 1948627 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1948461 1948462 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1948330 1948462 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1948330 1948331 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1948291 1948329 . - . KQ414661.1 exonerate:protein2genome:local exon 1948291 1948329 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948291 1948627 129 - . alignment_id 2 ; Query NvOr109PSE ; Align 1948628 194 165 ; Align 1948330 249 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr125 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 240 -> 309 Target range: 858 -> 654 241 : PheMetThrValIleAlaProLeuPhePhePheSerLeuLeuThrLeuCysAlaSerIlePheG : 262 |||! ! !..!!!:||| !!! !|||.!. ! !!! !:!!|||:!!||| !!:!:!!|||! PheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThrMetCysPheAsnLeuPheA 858 : TTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTC : 795 263 : lnMetSerGlnAsnAspIleIleSerLeuGluPheLeuGlyPheAlaMetTyrLeuSerCysMe : 283 :!:!!!!!|||!.! ! :!: !||| :!! !!|||!.!!!. ! !!:!:!! ! !!:! rgLeuThrGlnThrLysValTyrSer---GlnValLeuAlaLeuIleProPheMetValSerVa 794 : GACTGACACAGACCAAGGTGTATTCG---CAAGTTTTAGCATTGATACCGTTCATGGTCAGTGT : 735 284 : tLeuCysGlnValPheLeuTyrCysTrpTyrGlyAsnGluLeuLysLeuLysSerAlaAspLeu : 304 !!!!...|||:!!|||! !! !|||||||||||||||||| !|||:!!||| ! !|||! ! lPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLysValArgAspGln 734 : GTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGGTACGTGATCAA : 672 305 : ValAsnGluValPhe : 309 ..!:!! :::||| ThrAspPheLeuPhe 671 : ACAGACTTCttattc : 655 vulgar: NvOr125 240 309 . LHQN01050085.1 858 654 - 108 M 30 90 G 1 0 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 655 858 108 - . gene_id 1 ; sequence NvOr125 ; gene_orientation . LHQN01050085.1 exonerate:protein2genome:local cds 655 858 . - . LHQN01050085.1 exonerate:protein2genome:local exon 655 858 . - . insertions 0 ; deletions 1 LHQN01050085.1 exonerate:protein2genome:local similarity 655 858 108 - . alignment_id 1 ; Query NvOr125 ; Align 859 241 90 ; Align 769 272 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr121PSE Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 235 -> 295 Target range: 858 -> 681 236 : PheIleTyrValValValProLeuPheLeuPheSerLeuValThrLeuCysThrSerIlePheG : 257 |||! ! !..!:!!!.! !!! !|||||| ! !!! !:!!|||:!!||| !!:!:!!|||! PheSerIleThrMetAlaThrGlnPheLeuValThrThrMetThrMetCysPheAsnLeuPheA 858 : TTCAGCATCACGATGGCCACGCAATTTCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTC : 795 258 : lnMetSerGlnLysGlnValAlaSerPheGluPheLeuSerLeuThrMetTyrLeuAlaCysMe : 278 :!:!!!!!|||! :!!||| !||| :!! !!|||:!!|||! ! !!:!:!!!.! !!:! rgLeuThrGlnThrLysValTyrSer---GlnValLeuAlaLeuIleProPheMetValSerVa 794 : GACTGACACAGACCAAGGTGTATTCG---CAAGTTTTAGCATTGATACCGTTCATGGTCAGTGT : 735 279 : tLeuCysGlnValPheLeuTyrCysTrpPheGlyAsnGluLeuGluLeuLys : 295 !!!!...|||:!!|||! !! !||||||!:!||||||||| !:!!:!!||| lPheAlaGlnIlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys 734 : GTTCGCACAGATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAG : 682 vulgar: NvOr121PSE 235 295 . LHQN01050085.1 858 681 - 100 M 30 90 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 682 858 100 - . gene_id 1 ; sequence NvOr121PSE ; gene_orientation . LHQN01050085.1 exonerate:protein2genome:local cds 682 858 . - . LHQN01050085.1 exonerate:protein2genome:local exon 682 858 . - . insertions 0 ; deletions 1 LHQN01050085.1 exonerate:protein2genome:local similarity 682 858 100 - . alignment_id 1 ; Query NvOr121PSE ; Align 859 236 90 ; Align 769 267 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr126 Target: KQ414583.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold34, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 270 -> 298 Target range: 620383 -> 620467 271 : GluPhePheSerLeuPheMetTyrLeuSerCysMetLeuPheGlnIlePheIleTyrC : 290 !!:!!.|||.!!:!!||||||:!!:!!!!!|||||| !!:!|||||||||||||||| AspLeuPheGlyMetPheMetHisMetCysCysMetThrTyrGlnIlePheIleTyrC 620384 : GATTTGTTTGGTATGTTTATGCATATGTGCTGTATGACATATCAAATCTTTATATATT : 620441 291 : ysTrpPheGlyAsnGluLeuGlnLeu : 298 ||||| !|||||||||||| ! ||| ysTrpHisGlyAsnGluLeuTyrLeu 620442 : GCTGGCACGGGAACGAACTGTATCTT : 620467 vulgar: NvOr126 270 298 . KQ414583.1 620383 620467 + 109 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414583.1 exonerate:protein2genome:local gene 620384 620467 109 + . gene_id 1 ; sequence NvOr126 ; gene_orientation . KQ414583.1 exonerate:protein2genome:local cds 620384 620467 . + . KQ414583.1 exonerate:protein2genome:local exon 620384 620467 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local similarity 620384 620467 109 + . alignment_id 1 ; Query NvOr126 ; Align 620384 271 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr140 Target: KQ414588.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold11, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 333 -> 393 Target range: 776544 -> 776724 334 : TyrSerAsnGluTrpTyrGluThrSerIleArgSerGlnAsnLeuLeuLysPheMetA : 353 |||||| ! !||||||.!.!:!..!! |||!!!|||:::|||!!! !!!. ! TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaL 776545 : TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGT : 776602 354 : rgLeuArgCysLeuThrProCysGlnLeuThrAlaGlyGlyIleTyrValMetAsnPh : 372 ! !!.!||||||:!! !! !|||:!!||||||||||||:!! !..!||||||!! euArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLe 776603 : TAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTT : 776659 373 : eAlaAsnPheAlaSerIleIleLysThrSerThrSerTyrIleThrValPheAlaSer : 391 . !!:!|||:!!..!:!!! !::::!!||||||! ! !:!! !:!!! ! !..! uGlnSerPheSerGluValThrArgSerSerThrIleIleLeuLeuIleSerArgGlu 776660 : GCAAAGTTTCTCAGAGGTAACACGTTCATCGACAATTATTCTTCTAATATCTCGAGAA : 776716 392 : PheThr : 393 !:!:!! TyrSer 776717 : TATTCA : 776724 vulgar: NvOr140 333 393 . KQ414588.1 776544 776724 + 104 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414588.1 exonerate:protein2genome:local gene 776545 776724 104 + . gene_id 1 ; sequence NvOr140 ; gene_orientation . KQ414588.1 exonerate:protein2genome:local cds 776545 776724 . + . KQ414588.1 exonerate:protein2genome:local exon 776545 776724 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local similarity 776545 776724 104 + . alignment_id 1 ; Query NvOr140 ; Align 776545 334 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr139 Target: KQ414588.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold11, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 328 -> 386 Target range: 776544 -> 776796 329 : TyrLeuAsnGluTrpTyrThrCysSerThrArgAlaGlnLysLeuLeuAsnLeuMetI : 348 ||| ! ! !||||||!.! !!..!! !|||.!!|||..!|||!!! ||| !: TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaL 776545 : TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGT : 776602 349 : leLeuArgCysSerLysProCysGlnLeuThrAlaGlyGlyIleTyrValMetAsnPh : 367 !! !!.!||| !... !! !|||:!!||||||||||||:!! !..!||||||!! euArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLe 776603 : TAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTT : 776659 368 : eSerAsnPheAlaLys >>>> Target Intron 1 >>>> IleValLysThrS : 377 ...!!:!|||:!!:!! 78 bp ||||||||||||| uGlnSerPheSerGlu++ ++IleValLysThrS 776660 : GCAAAGTTTCTCAGAGgt.........................agATTGTAAAGACGT : 776767 378 : erMetSerTyrMetThrValPheAlaSer : 386 ||:!:|||||| ! !|||.!. !||| erValSerTyrTyrMetValLeuLysSer 776768 : CTGTCTCGTACTACATGGTACTGAAATCC : 776796 vulgar: NvOr139 328 386 . KQ414588.1 776544 776796 + 118 M 44 132 5 0 2 I 0 74 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414588.1 exonerate:protein2genome:local gene 776545 776796 118 + . gene_id 1 ; sequence NvOr139 ; gene_orientation + KQ414588.1 exonerate:protein2genome:local cds 776545 776676 . + . KQ414588.1 exonerate:protein2genome:local exon 776545 776676 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local splice5 776677 776678 . + . intron_id 1 ; splice_site "GT" KQ414588.1 exonerate:protein2genome:local intron 776677 776754 . + . intron_id 1 KQ414588.1 exonerate:protein2genome:local splice3 776753 776754 . + . intron_id 0 ; splice_site "AG" KQ414588.1 exonerate:protein2genome:local cds 776755 776796 . + . KQ414588.1 exonerate:protein2genome:local exon 776755 776796 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local similarity 776545 776796 118 + . alignment_id 1 ; Query NvOr139 ; Align 776545 329 132 ; Align 776755 373 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr137 Target: KQ414588.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold11, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 328 -> 386 Target range: 776544 -> 776796 329 : TyrLeuAsnGluTrpTyrThrCysProThrArgAlaGlnLysLeuLeuGlyLeuMetT : 348 ||| ! ! !||||||!.! !! !! !|||.!!|||..!|||!!!! !||| ! TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaL 776545 : TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGT : 776602 349 : hrLeuArgCysSerLysProCysGlnLeuThrAlaGlyGlyMetTyrValMetAsnPh : 367 ! !!.!||| !... !! !|||:!!||||||||||||:!: !..!||||||!! euArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLe 776603 : TAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTT : 776659 368 : eSerAsnPheAlaLys >>>> Target Intron 1 >>>> IleValLysThrS : 377 ...!!:!|||:!!:!! 78 bp ||||||||||||| uGlnSerPheSerGlu++ ++IleValLysThrS 776660 : GCAAAGTTTCTCAGAGgt.........................agATTGTAAAGACGT : 776767 378 : erMetSerTyrMetThrValLeuAlaSer : 386 ||:!:|||||| ! !|||||| !||| erValSerTyrTyrMetValLeuLysSer 776768 : CTGTCTCGTACTACATGGTACTGAAATCC : 776796 vulgar: NvOr137 328 386 . KQ414588.1 776544 776796 + 118 M 44 132 5 0 2 I 0 74 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414588.1 exonerate:protein2genome:local gene 776545 776796 118 + . gene_id 1 ; sequence NvOr137 ; gene_orientation + KQ414588.1 exonerate:protein2genome:local cds 776545 776676 . + . KQ414588.1 exonerate:protein2genome:local exon 776545 776676 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local splice5 776677 776678 . + . intron_id 1 ; splice_site "GT" KQ414588.1 exonerate:protein2genome:local intron 776677 776754 . + . intron_id 1 KQ414588.1 exonerate:protein2genome:local splice3 776753 776754 . + . intron_id 0 ; splice_site "AG" KQ414588.1 exonerate:protein2genome:local cds 776755 776796 . + . KQ414588.1 exonerate:protein2genome:local exon 776755 776796 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local similarity 776545 776796 118 + . alignment_id 1 ; Query NvOr137 ; Align 776545 329 132 ; Align 776755 373 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr143 Target: KQ414588.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold11, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 331 -> 389 Target range: 776544 -> 776796 332 : TyrAsnAsnGluTrpTyrGluCysSerIleLysSerGlnArgLeuLeuAlaPheMetM : 351 |||!:! ! !||||||.!. !!..!! !:!!!!||| !|||!!!!.!!!. !: TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaL 776545 : TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGT : 776602 352 : etLeuArgCysThrLysProCysGluLeuThrAlaGlyGlyIleTyrThrMetAsnLe : 370 !: !!.!||| !... !! !:!!:!!||||||||||||:!! !||||||||||| euArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLe 776603 : TAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTT : 776659 371 : uGluAsnPheGlySer >>>> Target Intron 1 >>>> LeuValLysThrS : 380 |:!!!:!|||..!..! 78 bp :!!|||||||||| uGlnSerPheSerGlu++ ++IleValLysThrS 776660 : GCAAAGTTTCTCAGAGgt.........................agATTGTAAAGACGT : 776767 381 : erIleSerTyrIleAlaValPheAlaSer : 389 ||:!!|||||| ! !|||.!. !||| erValSerTyrTyrMetValLeuLysSer 776768 : CTGTCTCGTACTACATGGTACTGAAATCC : 776796 vulgar: NvOr143 331 389 . KQ414588.1 776544 776796 + 122 M 44 132 5 0 2 I 0 74 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414588.1 exonerate:protein2genome:local gene 776545 776796 122 + . gene_id 1 ; sequence NvOr143 ; gene_orientation + KQ414588.1 exonerate:protein2genome:local cds 776545 776676 . + . KQ414588.1 exonerate:protein2genome:local exon 776545 776676 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local splice5 776677 776678 . + . intron_id 1 ; splice_site "GT" KQ414588.1 exonerate:protein2genome:local intron 776677 776754 . + . intron_id 1 KQ414588.1 exonerate:protein2genome:local splice3 776753 776754 . + . intron_id 0 ; splice_site "AG" KQ414588.1 exonerate:protein2genome:local cds 776755 776796 . + . KQ414588.1 exonerate:protein2genome:local exon 776755 776796 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local similarity 776545 776796 122 + . alignment_id 1 ; Query NvOr143 ; Align 776545 332 132 ; Align 776755 376 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr142 Target: KQ414588.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold11, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 330 -> 393 Target range: 776529 -> 776796 331 : IleLeuTyrAspAlaTyrAsnAsnGluTrpTyrGluCysSerLysLysThrLysThrL : 350 :!!! !!:!..! !|||!:! ! !||||||.!. !!..!|||!:!|||:!!:!!| ValHisPheSerArgTyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerL 776530 : GTCCATTTTTCTAGATACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGT : 776587 351 : euLeuLysPheMetMetLeuArgCysIleGluProCysGlnLeuThrAlaGlyGlyLe : 369 ||!!! !!!. !:!: !!.!|||:!!... !! !|||:!!|||||||||||||| euPheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLe 776588 : TGTTTGTATTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACT : 776644 370 : uTyrValMetAsnIleAlaAsnPheGlySer >>>> Target Intron 1 >>>> : 380 | !..!||||||:!: !!:!|||..!..! 78 bp uIleThrMetAsnLeuGlnSerPheSerGlu++ 776645 : AATTACAATGAACTTGCAAAGTTTCTCAGAGgt......................... : 776679 381 : LeuAlaLysThrSerMetSerTyrIleThrValPheAlaSer : 393 :!!!.!|||||||||:!:|||||| !! !|||.!. !||| ++IleValLysThrSerValSerTyrTyrMetValLeuLysSer 776680 : agATTGTAAAGACGTCTGTCTCGTACTACATGGTACTGAAATCC : 776796 vulgar: NvOr142 330 393 . KQ414588.1 776529 776796 + 124 M 49 147 5 0 2 I 0 74 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414588.1 exonerate:protein2genome:local gene 776530 776796 124 + . gene_id 1 ; sequence NvOr142 ; gene_orientation + KQ414588.1 exonerate:protein2genome:local cds 776530 776676 . + . KQ414588.1 exonerate:protein2genome:local exon 776530 776676 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local splice5 776677 776678 . + . intron_id 1 ; splice_site "GT" KQ414588.1 exonerate:protein2genome:local intron 776677 776754 . + . intron_id 1 KQ414588.1 exonerate:protein2genome:local splice3 776753 776754 . + . intron_id 0 ; splice_site "AG" KQ414588.1 exonerate:protein2genome:local cds 776755 776796 . + . KQ414588.1 exonerate:protein2genome:local exon 776755 776796 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local similarity 776530 776796 124 + . alignment_id 1 ; Query NvOr142 ; Align 776530 331 147 ; Align 776755 380 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr128 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 234 -> 302 Target range: 3178399 -> 3178603 235 : ValGlnSerPhePheIleValIleIleValLeuLeuPheIlePheAsnLeuIleVa : 253 |||.!.!!! ! ||| !!!:||| !!|||! !||| !.!!!:!! !! || ValAsnThrValPheGlnTyrMetIlePheLeuGlnPheSerIleSerSerThrVa 3178400 : GTGAACACTGTGTTCCAGTACATGATTTTCCTGCAATTTTCCATCAGTTCGACGGT : 3178454 254 : lLeuCysThrSerLeuPheGlnIleProGlnLysAsnIleMetThrLeuGluPheP : 272 ||||||| !|||:!!!:!:!!!!: !! !! ||| !.!.!:!:!!.!.||| lLeuCysLeuSerIleTyrLysMetSerThrIleAsnProPheSerMetAsnPheV 3178455 : GCTGTGTTTGAGCATCTATAAAATGTCGACGATTAATCCATTTAGCATGAACTTCG : 3178511 273 : heThrLeuPheValTyrLeuValGlyIleLeuPheGlnValTyrValTyrCysTrp : 290 !! !! ! ! !|||||| ! !!!!:||| |||||||||:!!||||||||| alTrpCysAlaSerTyrLeuCysCysMetLeuThrGlnValTyrLeuTyrCysTrp 3178512 : TCTGGTGCGCCTCCTATTTATGCTGTATGCTCACGCAGGTGTATTTATACTGTTGG : 3178565 291 : PheGlyAsnGlnLeuGlnLeuLysSerLysThrIle : 302 |||||||||:!!:!! !|||||| ! |||:!: PheGlyAsnGluValThrLeuLysValGlyThrVal 3178566 : TTCGGGAACGAGGTGACGTTGAAGGTTGGCACCGTG : 3178603 vulgar: NvOr128 234 302 . KQ414646.1 3178399 3178603 + 127 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178400 3178603 127 + . gene_id 1 ; sequence NvOr128 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178400 3178603 . + . KQ414646.1 exonerate:protein2genome:local exon 3178400 3178603 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178400 3178603 127 + . alignment_id 1 ; Query NvOr128 ; Align 3178400 235 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr128 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 246 -> 298 Target range: 3180511 -> 3180667 247 : PheIlePheAsnLeuIleValLeuCysThrSerLeuPheGlnIleProGlnLysAs : 265 |||.!! !:!!!!!!:|||:!!||| !||||||.!!|||:!: !.!. !:! PhePheGlySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAs 3180512 : TTTTTCGGAAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGA : 3180566 266 : nIleMetThrLeuGluPhePheThrLeuPheValTyrLeuValGlyIleLeuPheG : 284 !|||:!:!:! !||||||!!..!! !... |||||| ...||||||.!.| pIleLeuSerThrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuG 3180567 : TATTCTCAGCACCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGC : 3180623 285 : lnValTyrValTyrCysTrpPheGlyAsnGlnLeuGlnLeuLys : 298 || !!:!:!!|||||||||!:!||||||:!!:!!::! !||| lnSerPheLeuTyrCysTrpTyrGlyAsnGluValArgThrLys 3180624 : AGAGCTTTCTTTACTGTTGGTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: NvOr128 246 298 . KQ414646.1 3180511 3180667 + 120 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180512 3180667 120 + . gene_id 2 ; sequence NvOr128 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180512 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180512 3180667 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180512 3180667 120 + . alignment_id 2 ; Query NvOr128 ; Align 3180512 247 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr128 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 234 -> 298 Target range: 3155820 -> 3156012 235 : ValGlnSerPhePheIleValIleIleValLeuLeuPheIlePheAsnLeuIleVa : 253 :!!.!...! ||| :!! ||| !! !! !||| ! !:! !:!:!. IleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAlaValSerThrLeuAl 3155821 : ATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGTGAGTACGCTGGC : 3155875 254 : lLeuCysThrSerLeuPheGlnIleProGlnLysAsnIleMetThrLeuGluPheP : 272 !:!!||| !!:!|||!:!! !:!! !! !..!:!!:!:! ! !!:!!..!!:! aIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValThrProIleArgTyrV 3155876 : GATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGACGCCGATTAGGTATG : 3155932 273 : heThrLeuPheValTyrLeuValGlyIleLeuPheGlnValTyrValTyrCysTrp : 290 ! !:!!.!!:!!||| ! ! !!!!:||| |||:!!!:!:!!||||||||| alGluIleIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysTrp 3155933 : TGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTGG : 3155986 291 : PheGlyAsnGlnLeuGlnLeuLys : 298 !:!||||||:!!:!!:!!|||||| TyrGlyAsnGluValLysLeuLys 3155987 : TACGGGAACGAAGTTAAGCTGAAG : 3156012 vulgar: NvOr128 234 298 . KQ414646.1 3155820 3156012 + 103 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155821 3156012 103 + . gene_id 3 ; sequence NvOr128 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155821 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155821 3156012 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155821 3156012 103 + . alignment_id 3 ; Query NvOr128 ; Align 3155821 235 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr126 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 235 -> 299 Target range: 3155820 -> 3156012 236 : ValLysSerPhePheIleValValIleValProLeuPheIlePheSerLeuIleTh : 254 :!!!!...! ||| :!!!.!||| !! !!! !||| ! ||| !:!:.! IleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAlaValSerThrLeuAl 3155821 : ATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGTGAGTACGCTGGC : 3155875 255 : rLeuCysThrSerLeuPheGlnMetProGluLysGluValLeuSerLeuGluPheP : 273 !:!!||| !!:!|||!:!! !:!: !!! !..!!!:||| ! !!:!!..!!:! aIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValThrProIleArgTyrV 3155876 : GATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGACGCCGATTAGGTATG : 3155932 274 : heSerLeuPheMetTyrLeuSerCysMetLeuPheGlnIlePheIleTyrCysTrp : 291 ! ..!:!!.!!|||||| !|||||||||||| ||||||||||||||||||||| alGluIleIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysTrp 3155933 : TGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTGG : 3155986 292 : PheGlyAsnGluLeuGlnLeuLys : 299 !:!|||||||||:!!:!!|||||| TyrGlyAsnGluValLysLeuLys 3155987 : TACGGGAACGAAGTTAAGCTGAAG : 3156012 vulgar: NvOr126 235 299 . KQ414646.1 3155820 3156012 + 144 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155821 3156012 144 + . gene_id 1 ; sequence NvOr126 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155821 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155821 3156012 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155821 3156012 144 + . alignment_id 1 ; Query NvOr126 ; Align 3155821 236 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr126 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 228 -> 307 Target range: 3178378 -> 3178615 229 : IleAlaGluValValArgArgValLysSerPhePheIleValValIleValProLe : 247 |||...... !!..!!:!! !|||!!.!!! ! ||| !:!!||| !!! !! IleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLeuGl 3178379 : atttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCTGCA : 3178433 248 : uPheIlePheSerLeuIleThrLeuCysThrSerLeuPheGlnMetProGluLysG : 266 !||| !.!!|||! !! ..!|||||| !|||:!!!:!:!!||| !! !! . nPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrIleA 3178434 : ATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGATTA : 3178490 267 : luValLeuSerLeuGluPhePheSerLeuPheMetTyrLeuSerCysMetLeuPhe : 284 !. !!!!|||:!!.!.||| !!!!!! ! ! ||||||!!!||||||||| snProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeuThr 3178491 : ATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACG : 3178544 285 : GlnIlePheIleTyrCysTrpPheGlyAsnGluLeuGlnLeuLysSerLysThrIl : 303 |||:!:!:!:!!|||||||||||||||||||||:!! !|||||| ! |||:! GlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLysValGlyThrVa 3178545 : CAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAGGTTGGCACCGT : 3178601 304 : eValAspAlaVal : 307 : !! ! !||| lPheProArgVal 3178602 : GTTTCCTCGAGTG : 3178615 vulgar: NvOr126 228 307 . KQ414646.1 3178378 3178615 + 140 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178379 3178615 140 + . gene_id 2 ; sequence NvOr126 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178379 3178615 . + . KQ414646.1 exonerate:protein2genome:local exon 3178379 3178615 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178379 3178615 140 + . alignment_id 2 ; Query NvOr126 ; Align 3178379 229 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr126 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 247 -> 299 Target range: 3180511 -> 3180667 248 : PheIlePheSerLeuIleThrLeuCysThrSerLeuPheGlnMetProGluLysGl : 266 |||.!! |||!!!!!:..!:!!||| !||||||.!!|||:!! !.!. !!! PhePheGlySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAs 3180512 : TTTTTCGGAAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGA : 3180566 267 : uValLeuSerLeuGluPhePheSerLeuPheMetTyrLeuSerCysMetLeuPheG : 285 ::!!|||||| !||||||!!.:!! !......||||||||| :::|||.!.| pIleLeuSerThrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuG 3180567 : TATTCTCAGCACCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGC : 3180623 286 : lnIlePheIleTyrCysTrpPheGlyAsnGluLeuGlnLeuLys : 299 ||! !|||:!!|||||||||!:!|||||||||:!!::! !||| lnSerPheLeuTyrCysTrpTyrGlyAsnGluValArgThrLys 3180624 : AGAGCTTTCTTTACTGTTGGTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: NvOr126 247 299 . KQ414646.1 3180511 3180667 + 135 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180512 3180667 135 + . gene_id 3 ; sequence NvOr126 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180512 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180512 3180667 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180512 3180667 135 + . alignment_id 3 ; Query NvOr126 ; Align 3180512 248 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr126 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 239 -> 299 Target range: 3150628 -> 3150808 240 : PheIleValValIleValProLeuPheIlePheSerLeuIleThrLeuCysThrSe : 258 |||! ! !:!!|||! ! !! !.!!:!!! ||| !:!:..!:!!||| !! PheArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuValValCysPheIl 3150629 : TTCAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGGTAGTGTGTTTCAT : 3150683 259 : rLeuPheGlnMetProGluLysGluValLeuSerLeuGluPhePheSerLeuPheM : 277 !|||!:!:!!:!! !!.!.! ! !:!!|||! !:!!!:!.!...!!!! !!: eLeuTyrGluLeuAlaAsnThrProProIleSerSerLysTyrLeuGlnPheValL 3150684 : CCTGTACGAATTGGCGAACACGCCTCCAATCAGCTCCAAGTACCTGCAATTTGTCC : 3150740 278 : etTyrLeuSerCysMetLeuPheGlnIlePheIleTyrCysTrpPheGlyAsnGlu : 295 !!||||||:!!||||||:!! |||||||||.!!|||||||||!:!|||.!.:!! euTyrLeuAlaCysMetMetThrGlnIlePhePheTyrCysTrpTyrGlyGluGln 3150741 : TGTACCTGGCCTGTATGATGACGCAGATCTTCTTTTACTGCTGGTACGGCGAGCAG : 3150794 296 : LeuGlnLeuLys : 299 |||:!!|||||| LeuLysLeuLys 3150795 : TTGAAACTGAAG : 3150808 vulgar: NvOr126 239 299 . KQ414646.1 3150628 3150808 + 119 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150629 3150808 119 + . gene_id 4 ; sequence NvOr126 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150629 3150808 . + . KQ414646.1 exonerate:protein2genome:local exon 3150629 3150808 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150629 3150808 119 + . alignment_id 4 ; Query NvOr126 ; Align 3150629 240 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr126 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 233 -> 299 Target range: 3164989 -> 3165184 234 : ArgArgValLysSerPhePheIleValValIleValProLeuPheIlePheSerLe : 252 !:!!:!|||!!...! |||! !:!!:!!:!::!! !!! !||| !.!.|||:! LysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMe 3164990 : AAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCAT : 3165044 253 : uIleThrLeuCysThrSerLeuPheGlnMetProGluLysGluValLeuSerLeuG : 271 ! ..!:!!||| !!:!|||!:!!:!||| !!:!!! :!! :!!... : tSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---MetAspThrL 3165045 : GTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---ATGGAcacga : 3165098 272 : luPhePheSerLeuPheMetTyrLeuSerCysMetLeuPheGlnIlePheIleTyr : 289 ::||| ...:::.!.:!:|||! !! !|||! :!! ||||||||| !||| ysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyr 3165099 : aattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTAT : 3165152 290 : CysTrpPheGlyAsnGluLeuGlnLeuLys : 299 ||||||!:!|||||||||:!!:!!! !||| CysTrpTyrGlyAsnGluValLysHisLys 3165153 : TGCTGGTACGGCAACGAAGTGAAACATAAG : 3165184 vulgar: NvOr126 233 299 . KQ414646.1 3164989 3165184 + 114 M 33 99 G 1 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164990 3165184 114 + . gene_id 5 ; sequence NvOr126 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164990 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164990 3165184 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3164990 3165184 114 + . alignment_id 5 ; Query NvOr126 ; Align 3164990 234 99 ; Align 3165089 268 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr126 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 233 -> 299 Target range: 3158461 -> 3158656 234 : ArgArgValLysSerPhePheIleValValIleValProLeuPheIlePheSerLe : 252 !:!!:!|||!!...! |||! !:!!:!!:!::!! !!! !||| !.!.|||:! LysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMe 3158462 : AAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCAT : 3158516 253 : uIleThrLeuCysThrSerLeuPheGlnMetProGluLysGluValLeuSerLeuG : 271 ! ..!:!!||| !!:!|||!:!!:!||| !!:!!! :!! :!!... : tSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---MetAspThrL 3158517 : GTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---ATGGAcacga : 3158570 272 : luPhePheSerLeuPheMetTyrLeuSerCysMetLeuPheGlnIlePheIleTyr : 289 ::||| ...:::.!.:!:|||! !! !|||! :!! ||||||||| !||| ysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyr 3158571 : aattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTAT : 3158624 290 : CysTrpPheGlyAsnGluLeuGlnLeuLys : 299 ||||||!:!|||||||||:!!:!! !||| CysTrpTyrGlyAsnGluValLysAspLys 3158625 : TGTTGGTACGGCAACGAAGTGAAAGATAAG : 3158656 vulgar: NvOr126 233 299 . KQ414646.1 3158461 3158656 + 113 M 33 99 G 1 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158462 3158656 113 + . gene_id 6 ; sequence NvOr126 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158462 3158656 . + . KQ414646.1 exonerate:protein2genome:local exon 3158462 3158656 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3158462 3158656 113 + . alignment_id 6 ; Query NvOr126 ; Align 3158462 234 99 ; Align 3158561 268 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr127INT Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 214 -> 281 Target range: 3178390 -> 3178591 215 : ValLysLysValGlnSerPhePheIleValValValValLeuLeuPheSerCysSe : 233 ..!:!!! !|||.!.!!! ! ||| !:!!:!! !!|||! !|||||| !|| ThrGlnThrValAsnThrValPheGlnTyrMetIlePheLeuGlnPheSerIleSe 3178391 : ACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCTGCAATTTTCCATCAG : 3178445 234 : rLeuIleIleLeuCysThrSerLeuPheGlnMetProGlnGlnAsnIleMetThrL : 252 |! !! :!:|||||| !|||:!!!:!:!!||| !! ! ||| !.!.!:!: rSerThrValLeuCysLeuSerIleTyrLysMetSerThrIleAsnProPheSerM 3178446 : TTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGATTAATCCATTTAGCA : 3178502 253 : euGluPhePheThrLeuPheMetTyrLeuMetSerValLeuTyrGlnIlePheVal : 270 !!.!.||| !! !! ! ! |||||| !!!:!!||| |||:!:!:!:!! etAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeuThrGlnValTyrLeu 3178503 : TGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACGCAGGTGTATTTA : 3178556 271 : TyrCysTrpPheGlyAsnGlnLeuGlnLeuLys : 281 ||||||||||||||||||:!!:!! !|||||| TyrCysTrpPheGlyAsnGluValThrLeuLys 3178557 : TACTGTTGGTTCGGGAACGAGGTGACGTTGAAG : 3178591 vulgar: NvOr127INT 214 281 . KQ414646.1 3178390 3178591 + 131 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178391 3178591 131 + . gene_id 1 ; sequence NvOr127INT ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178391 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178391 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178391 3178591 131 + . alignment_id 1 ; Query NvOr127INT ; Align 3178391 215 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr127INT Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 229 -> 281 Target range: 3180511 -> 3180667 230 : PheSerCysSerLeuIleIleLeuCysThrSerLeuPheGlnMetProGlnGlnAs : 248 |||! ! ! |||!!!!!::!::!!||| !||||||.!!|||:!! !.!. !:! PhePheGlySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAs 3180512 : TTTTTCGGAAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGA : 3180566 249 : nIleMetThrLeuGluPhePheThrLeuPheMetTyrLeuMetSerValLeuTyrG : 267 !|||:!:!:! !||||||!!..!! !......|||||| |||::!||| | pIleLeuSerThrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuLeuG 3180567 : TATTCTCAGCACCGAATTCTTAGCGACGAtattttatctgagctcgatACTGCTGC : 3180623 268 : lnIlePheValTyrCysTrpPheGlyAsnGlnLeuGlnLeuLys : 281 ||! !|||:!!|||||||||!:!||||||:!!:!!::! !||| lnSerPheLeuTyrCysTrpTyrGlyAsnGluValArgThrLys 3180624 : AGAGCTTTCTTTACTGTTGGTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: NvOr127INT 229 281 . KQ414646.1 3180511 3180667 + 127 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180512 3180667 127 + . gene_id 2 ; sequence NvOr127INT ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180512 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180512 3180667 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180512 3180667 127 + . alignment_id 2 ; Query NvOr127INT ; Align 3180512 230 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr127INT Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 217 -> 281 Target range: 3155820 -> 3156012 218 : ValGlnSerPhePheIleValValValValLeuLeuPheSerCysSerLeuIleIl : 236 :!!.!...! ||| :!!!.!:!! !! !! !|||:!! ||| !:!: IleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAlaValSerThrLeuAl 3155821 : ATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGCGGTGAGTACGCTGGC : 3155875 237 : eLeuCysThrSerLeuPheGlnMetProGlnGlnAsnIleMetThrLeuGluPheP : 255 :!!||| !!:!|||!:!! !:!: !! !..!:!!:!:! ! !!:!!..!!:! aIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValThrProIleArgTyrV 3155876 : GATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGACGCCGATTAGGTATG : 3155932 256 : heThrLeuPheMetTyrLeuMetSerValLeuTyrGlnIlePheValTyrCysTrp : 273 ! !:!!.!!|||||| !! !!!:!!||| |||||||||:!!||||||||| alGluIleIleMetTyrSerSerCysMetLeuThrGlnIlePheIleTyrCysTrp 3155933 : TGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATATTCATTTACTGCTGG : 3155986 274 : PheGlyAsnGlnLeuGlnLeuLys : 281 !:!||||||:!!:!!:!!|||||| TyrGlyAsnGluValLysLeuLys 3155987 : TACGGGAACGAAGTTAAGCTGAAG : 3156012 vulgar: NvOr127INT 217 281 . KQ414646.1 3155820 3156012 + 118 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155821 3156012 118 + . gene_id 3 ; sequence NvOr127INT ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155821 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155821 3156012 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155821 3156012 118 + . alignment_id 3 ; Query NvOr127INT ; Align 3155821 218 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr127INT Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 215 -> 281 Target range: 3164989 -> 3165184 216 : LysLysValGlnSerPhePheIleValValValValLeuLeuPheSerCysSerLe : 234 |||||||||.!...! |||! !:!!:!!:!!:!!! !! !|||!!! |||:! LysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMe 3164990 : AAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCAT : 3165044 235 : uIleIleLeuCysThrSerLeuPheGlnMetProGlnGlnAsnIleMetThrLeuG : 253 ! :!::!!||| !!:!|||!:!!:!||| !!||| !!. ||| : tSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---MetAspThrL 3165045 : GTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---ATGGAcacga : 3165098 254 : luPhePheThrLeuPheMetTyrLeuMetSerValLeuTyrGlnIlePheValTyr : 271 ::||| :::.!.:!:|||! !.!.!!!..!:!! ||||||||| !||| ysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyr 3165099 : aattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTAT : 3165152 272 : CysTrpPheGlyAsnGlnLeuGlnLeuLys : 281 ||||||!:!||||||:!!:!!:!!! !||| CysTrpTyrGlyAsnGluValLysHisLys 3165153 : TGCTGGTACGGCAACGAAGTGAAACATAAG : 3165184 vulgar: NvOr127INT 215 281 . KQ414646.1 3164989 3165184 + 113 M 33 99 G 1 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164990 3165184 113 + . gene_id 4 ; sequence NvOr127INT ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164990 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164990 3165184 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3164990 3165184 113 + . alignment_id 4 ; Query NvOr127INT ; Align 3164990 216 99 ; Align 3165089 250 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr127INT Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 215 -> 281 Target range: 3158461 -> 3158656 216 : LysLysValGlnSerPhePheIleValValValValLeuLeuPheSerCysSerLe : 234 |||||||||.!...! |||! !:!!:!!:!!:!!! !! !|||!!! |||:! LysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMe 3158462 : AAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCAT : 3158516 235 : uIleIleLeuCysThrSerLeuPheGlnMetProGlnGlnAsnIleMetThrLeuG : 253 ! :!::!!||| !!:!|||!:!!:!||| !!||| !!. ||| : tSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---MetAspThrL 3158517 : GTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---ATGGAcacga : 3158570 254 : luPhePheThrLeuPheMetTyrLeuMetSerValLeuTyrGlnIlePheValTyr : 271 ::||| :::.!.:!:|||! !.!.!!!..!:!! ||||||||| !||| ysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyr 3158571 : aattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTAT : 3158624 272 : CysTrpPheGlyAsnGlnLeuGlnLeuLys : 281 ||||||!:!||||||:!!:!!:!! !||| CysTrpTyrGlyAsnGluValLysAspLys 3158625 : TGTTGGTACGGCAACGAAGTGAAAGATAAG : 3158656 vulgar: NvOr127INT 215 281 . KQ414646.1 3158461 3158656 + 112 M 33 99 G 1 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158462 3158656 112 + . gene_id 5 ; sequence NvOr127INT ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3158462 3158656 . + . KQ414646.1 exonerate:protein2genome:local exon 3158462 3158656 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3158462 3158656 112 + . alignment_id 5 ; Query NvOr127INT ; Align 3158462 216 99 ; Align 3158561 250 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr127INT Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 215 -> 281 Target range: 1946242 -> 1946047 216 : LysLysValGlnSerPhePheIleValValValValLeuLeuPheSerCysSerLe : 234 |||||||||.!...! |||! !:!!:!!:!!:!!! !! !|||!!! |||:! LysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMe 1946242 : AAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCAT : 1946188 235 : uIleIleLeuCysThrSerLeuPheGlnMetProGlnGlnAsnIleMetThrLeuG : 253 ! :!::!!||| !!:!|||!:!!:!||| !!||| !!. ||| : tSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---MetAspThrL 1946187 : GTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---ATGGAcacga : 1946134 254 : luPhePheThrLeuPheMetTyrLeuMetSerValLeuTyrGlnIlePheValTyr : 271 ::||| :::.!.:!:|||! !.!.!!!..!:!! ||||||||| !||| ysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyr 1946133 : aattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTAT : 1946080 272 : CysTrpPheGlyAsnGlnLeuGlnLeuLys : 281 ||||||!:!||||||:!!:!!:!! !||| CysTrpTyrGlyAsnGluValLysAspLys 1946079 : TGCTGGTACGGCAACGAAGTGAAAGATAAG : 1946048 vulgar: NvOr127INT 215 281 . KQ414661.1 1946242 1946047 - 112 M 33 99 G 1 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946048 1946242 112 - . gene_id 1 ; sequence NvOr127INT ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946048 1946242 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946242 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946048 1946242 112 - . alignment_id 1 ; Query NvOr127INT ; Align 1946243 216 99 ; Align 1946144 250 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr126 Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 233 -> 299 Target range: 1946242 -> 1946047 234 : ArgArgValLysSerPhePheIleValValIleValProLeuPheIlePheSerLe : 252 !:!!:!|||!!...! |||! !:!!:!!:!::!! !!! !||| !.!.|||:! LysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCysIleSerMe 1946242 : AAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTGCATAAGCAT : 1946188 253 : uIleThrLeuCysThrSerLeuPheGlnMetProGluLysGluValLeuSerLeuG : 271 ! ..!:!!||| !!:!|||!:!!:!||| !!:!!! :!! :!!... : tSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---MetAspThrL 1946187 : GTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---ATGGAcacga : 1946134 272 : luPhePheSerLeuPheMetTyrLeuSerCysMetLeuPheGlnIlePheIleTyr : 289 ::||| ...:::.!.:!:|||! !! !|||! :!! ||||||||| !||| ysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIlePheTyrTyr 1946133 : aattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATATTTTACTAT : 1946080 290 : CysTrpPheGlyAsnGluLeuGlnLeuLys : 299 ||||||!:!|||||||||:!!:!! !||| CysTrpTyrGlyAsnGluValLysAspLys 1946079 : TGCTGGTACGGCAACGAAGTGAAAGATAAG : 1946048 vulgar: NvOr126 233 299 . KQ414661.1 1946242 1946047 - 113 M 33 99 G 1 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946048 1946242 113 - . gene_id 1 ; sequence NvOr126 ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946048 1946242 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946242 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946048 1946242 113 - . alignment_id 1 ; Query NvOr126 ; Align 1946243 234 99 ; Align 1946144 268 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr143 Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 127 -> 215 Target range: 891603 -> 891867 128 : ValValTyrMetValLeuAlaValIleValPheIleThrMetProTyrLeuProValV : 147 :!!!.!|||:!: !:!!.!!:!!:!!:!!!:!:!! !:!:||| !:!! !!:!!: LeuAlaTyrValTyrMetThrLeuLeuIleTyrLeuLeuLeuProProMetSerLeuI 891604 : TTAGCATACGTTTATATGACACTTTTAATCTACTTACTATTACCGCCCATGTCATTAA : 891661 148 : alIleAspIleValPheProIleAsnGlyThrArgProArgLeuPheValLeuAspGl : 166 !!|||||| !|||.!. !! !||| !:!!!:! !||| !|||:!!!!!!!: leIleAspAspValIleSerSerAsnTyrSerGlnGluArgAsnPheLeuPheGluLe 891662 : TAATTGATGACGTTATATCCTCAAATTATTCGCAAGAGCGAAACTTTTTATTCGAACT : 891718 167 : yGluTyrIleValAspLysTyrGluAsnTyrAsnLysIleTyrIlePheGluSerVal : 185 !!!:||| !||||||!.. ::: ::: ||| ||| !..!! !:!! uAspTyrGlyValAspSerGlnGlnTyrPheTyrTyrIleSerIleHisSerTyrMet 891719 : CGACTATGGCGTGGACAGccaacaatatttttattatatatccATTCATTCGTACATG : 891775 186 : CysSerValValSerValProIlePheCysThrIleAspSerThrTyrAlaValCysV : 205 ! !!!!.!||| !!.! !:!!.!!..!||| !|||!!!|||||| !:!!! ! GlyThrAlaValValAlaAsnLeuIleAlaThrCysAspThrThrTyrMetLeuTyrS 891776 : GGAACTGCTGTAGTTGCCAATTTAATTGCTACTTGCGATACTACCTACATGTTGTACT : 891835 206 : alGlnGlnCysValAlaLeuLeuAlaIleVal : 215 !|||!!...! !||||||!!!||||||||| erGlnHisAlaTyrAlaLeuPheAlaIleVal 891836 : CTCAACATGCTTATGCTTTGTTTGCAATTGTA : 891867 vulgar: NvOr143 127 215 . KQ414735.1 891603 891867 + 110 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 891604 891867 110 + . gene_id 1 ; sequence NvOr143 ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 891604 891867 . + . KQ414735.1 exonerate:protein2genome:local exon 891604 891867 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 891604 891867 110 + . alignment_id 1 ; Query NvOr143 ; Align 891604 128 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr129 Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 281 -> 327 Target range: 892322 -> 892460 282 : PheValLeuAlaValLeuLysThrProAspLeuPheAspArgLeuArgLeuAlaMetV : 301 !:!|||! !.!!|||:!!||| ! !:!!:!! !|||! !:!!|||!!!!.! TyrVal***ThrValMetLysLeuGlyAsnIleGlyAspMetIleArgPheGlySerP 892323 : TATGTATAGACTGTAATGAAACTAGGTAATATAGGCGATATGATAAGATTCGGATCAT : 892380 302 : alLeuPheAlaGlnAlaValHisLeuPheTyrIleThrTrpProGlyGlnLysLeuIl : 320 !! !||||||||||||||||||:::||| ||| ! |||||||||!:!|||:! heThrPheAlaGlnAlaValHisIlePheLeuIleCysLeuProGlyGlnArgLeuVa 892381 : TTACGTTCGCACAAGCAGttcatatatttttgatttgCCTTCCTGGACAAAGACTGGT : 892437 321 : eAspHisGlyGluAspLeuPhe : 327 ::!!|||.!!|||.!.:!!!:! lAsnHisSerGluGlnValTyr 892438 : GAATCATAGTGAACAGGTGTAC : 892460 vulgar: NvOr129 281 327 . KQ414735.1 892322 892460 + 104 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 892323 892460 104 + . gene_id 1 ; sequence NvOr129 ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 892323 892460 . + . KQ414735.1 exonerate:protein2genome:local exon 892323 892460 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 892323 892460 104 + . alignment_id 1 ; Query NvOr129 ; Align 892323 282 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr140 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 328 -> 381 Target range: 35624 -> 35465 329 : LeuPheGluAspAlaTyrSerAsnGluTrpTyrGluThrSerIleArgSerGlnAsnLeu : 348 ||||||! ! !|||||| :!!||||||.!.!:!||| |||!!!|||!.!||| LeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGlnThrLeu 35624 : TTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAAACTCTG : 35567 349 : LeuLysPheMetArgLeuArgCysLeuThrProCysGlnLeuThrAlaGlyGlyIleTyr : 368 ! ! !.!. ! !||| !!||||||||| !|||||||||||||||:!: ! TyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGlyLeuIle 35566 : TACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGATT : 35507 369 : ValMetAsnPheAlaAsnPheAlaSerIleIleLysThr : 381 !:!!|||!!.! !!.!||||||..!:!!! !! !||| SerLeuAsnLeuGluThrPheAlaGluValAsnMetThr 35506 : TCCTTGAATTTGGAGACTTTTGCCGAGGTAAATATGACA : 35466 vulgar: NvOr140 328 381 . KQ414772.1 35624 35465 - 102 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 35466 35624 102 - . gene_id 1 ; sequence NvOr140 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 35466 35624 . - . KQ414772.1 exonerate:protein2genome:local exon 35466 35624 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 35466 35624 102 - . alignment_id 1 ; Query NvOr140 ; Align 35625 329 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr140 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 333 -> 393 Target range: 12643 -> 12463 334 : TyrSerAsnGluTrpTyrGluThrSerIleArgSerGlnAsnLeuLeuLysPheMetArg : 353 |||||| ! !||||||.!.!:!..!! |||!!!|||:::|||!!! !!!. ! ! TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeu 12643 : TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGTTA : 12586 354 : LeuArgCysLeuThrProCysGlnLeuThrAlaGlyGlyIleTyrValMetAsnPheAla : 373 !!.!||||||:!! !! !|||:!!||||||||||||:!! !..!||||||!!. ! ArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGln 12585 : AGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAA : 12526 374 : AsnPheAlaSerIleIleLysThrSerThrSerTyrIleThrValPheAlaSerPheThr : 393 !:!|||:!!..!:!!! !!..:!!||||||! ! !:!! !:!!! ! ...:::::: SerPheSerGluValThrSerSerSerThrIleIleLeuLeuIleSerArgGluTyrSer 12525 : AGTTTCTCAGAGGTAACAAGTTCATCGACAATTATTCTTCTAATATCTCgagaatattca : 12466 vulgar: NvOr140 333 393 . KQ414772.1 12643 12463 - 102 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 12464 12643 102 - . gene_id 2 ; sequence NvOr140 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 12464 12643 . - . KQ414772.1 exonerate:protein2genome:local exon 12464 12643 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 12464 12643 102 - . alignment_id 2 ; Query NvOr140 ; Align 12644 334 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr140 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 328 -> 378 Target range: 37058 -> 36908 329 : LeuPheGluAspAlaTyrSerAsnGluTrpTyrGluThrSerIleArgSerGlnAsnLeu : 348 ||||||! ! !|||||| :!!||||||.!.!:!||| |||!!!|||!.!||| LeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGlnThrLeu 37058 : TTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAAACTCTG : 37001 349 : LeuLysPheMetArgLeuArgCysLeuThrProCysGlnLeuThrAlaGlyGlyIleTyr : 368 ! ! !.!. ! !||| !!||||||||| !|||||||||||||||:!: ! TyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGlyLeuIle 37000 : TACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGATT : 36941 369 : ValMetAsnPheAlaAsnPheAlaSerIle : 378 !:!!|||!!.! !!.!||||||...::: SerLeuAsnLeuGluThrPheAlaGluVal 36940 : TCCTTGAATTTGGAGACTTTTGCCGaggta : 36909 vulgar: NvOr140 328 378 . KQ414772.1 37058 36908 - 101 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 36909 37058 101 - . gene_id 3 ; sequence NvOr140 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 36909 37058 . - . KQ414772.1 exonerate:protein2genome:local exon 36909 37058 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 36909 37058 101 - . alignment_id 3 ; Query NvOr140 ; Align 37059 329 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr141 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 159 Query range: 92 -> 214 Target range: 14330 -> 13899 93 : LeuTyrAspSerValAlaLysAsnTrpLysAsnIleThrGluLysHisGluArgGluIle : 112 ||| !..!.!!!.! !!!.:!!|||..!! ! ! ! !:!! |||! !!!:||| LeuIleSerGlyAlaArgAsnAspTrpSerIleGluArgProGlnGlyGluIleAspIle 14330 : CTTATTAGCGGTGCCAGGAACGACTGGTCGATCGAGAGACCACAAGGGGAGATCGACATT : 14273 113 : LeuValLysTyrSerGluArgGlyArgMetLeuThrLeuGlyTyrIle{T} >>>> Ta : 129 :!!..!||||||:!!||||||||| ...||| |||:!!{.} MetThrLysTyrAlaGluArgGlyAlaPheLeuIleSerThrTyrLeu{V}++ 14272 : ATGACTAAATACGCCGAGAGGGGtgcttttttaatttcgacaTACCTT{G}gt....... : 14219 130 : rget Intron 1 >>>> {hr}TyrAsnPheAlaAlaValIleValTyrThrThrMet : 141 65 bp {.!} !! .!!!.!..!||||||:!!!:!..!|||! ! ++{al}AsnAlaIleValCysValIleLeuPheValThrThr 14218 : ..................ag{TG}AACGCGATCGTTTGTGTCATCCTGTTCGTGACCACG : 14121 142 : ProLeuMetProPheLeuLeuAspIleIleLeuProLeuAsnGluSerArgProSerMet : 161 |||:!!! ||| !:!!|||||||||:!!|||||| !|||||||||||| ! ! ! ProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAla 14120 : CCGGTGACACCGCATATTTTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCG : 14061 162 : PheIleLeuAsnGlyGlnPheTyrValAspLysHisGluHisTyrLysLysLeuTyrAla : 181 !:!|||! ! !.! ! !:!!:!..!|||:!!|||:!!:!! !! ! ! :!! !.!! TyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThr 14060 : TACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACG : 14001 182 : PheAspCysLeuCysIlePheValIleValProAlaAlaLeuAlaValAspThrMetTyr : 201 ! ...! ! |||.!!|||:!: !! !!.! !:!!||| !||||||! ||| HisMetAlaSerValIleLeuValValPheTyrValTyrValAlaCysAspThrSerTyr 14000 : CACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTAC : 13941 202 : ValAlaCysThrGluHisCysLeuGlyLeuPheAlaIle : 214 :!! ! !..!:!!||| !!! !||||||!!.|||:!: IleTyrValValGlnHisGlyCysGlyLeuLeuAlaVal 13940 : ATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTG : 13900 vulgar: NvOr141 92 214 . KQ414772.1 14330 13899 - 159 M 36 108 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13900 14330 159 - . gene_id 1 ; sequence NvOr141 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 14222 14330 . - . KQ414772.1 exonerate:protein2genome:local exon 14222 14330 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 14220 14221 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 14157 14221 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 14157 14158 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 13900 14156 . - . KQ414772.1 exonerate:protein2genome:local exon 13900 14156 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13900 14330 159 - . alignment_id 1 ; Query NvOr141 ; Align 14331 93 108 ; Align 14155 130 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr141 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 131 -> 187 Target range: 45958 -> 45790 132 : PheAlaAlaValIleValTyrThrThrMetProLeuMetProPheLeuLeuAspIleIle : 151 !:! !!.!||| !|||!:!:!!||| !||||||!!:||||||:!!||||||:!!||| TyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeuAspLeuIle 45958 : TACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTGGACCTAATT : 45901 152 : LeuProLeuAsnGluSerArgProSerMetPheIleLeuAsnGlyGlnPheTyrValAsp : 171 ! !||||||||||||||||||||| !!:!!!:! !! !!!.!.! ! ! !||| !!:!! SerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyrCysTyrPheAsn 45900 : TCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTACTGTTACTTCAAT : 45841 172 : LysHisGluHisTyrLysLysLeuTyrAlaPheAspCysLeuCysIle : 187 ! !!!!::!!||| ! ! :!! !.!!:! ! !! !|||||| ProAspAspTyrTyrTyrTyrValValGlyTyrThrSerAlaCysIle 45840 : CCGGACGACTACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATA : 45791 vulgar: NvOr141 131 187 . KQ414772.1 45958 45790 - 119 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45791 45958 119 - . gene_id 2 ; sequence NvOr141 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45791 45958 . - . KQ414772.1 exonerate:protein2genome:local exon 45791 45958 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45791 45958 119 - . alignment_id 2 ; Query NvOr141 ; Align 45959 132 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr141 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 325 -> 390 Target range: 37064 -> 36630 326 : GluGlyLeuPheArgAspAlaTyrAsnAsnGlnTrpTyrGluGlySerAlaLysSerLys : 345 :!!! !|||||| ! ! !|||!:! :!!||||||.!..!!||| !!!:!!!!:!! GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 37064 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 37007 346 : ThrLeuLeuLysIleLeuThrLeuArgCysValGluProCysLeuIleThrAlaGlyGly : 365 ||||||! ! !:!! ! ! !||| !!:!! ||| |||:!!|||||||||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 37006 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 36947 366 : LeuValThrMetAsnPheAlaThrTyrLeuThr >>>> Target Intron 1 >>>> : 377 |||:!!:!!:!!|||!!.! !|||!:! ! 239 bp LeuIleSerLeuAsnLeuGluThrPheAlaGlu++ 36946 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGaggt......................... : 36909 378 : IleMetLysLysSerValSerPheIleThrValPheSerSer : 390 |||:!:||| !||||||||||||...||||||.!.!.!||| ++IleLeuLysGlySerValSerPhePheThrValMetLysSer 36908 : agaTCTTAAAAGGGtccgtttcctttttcacgGTAATGAAATCG : 36631 vulgar: NvOr141 325 390 . KQ414772.1 37064 36630 - 114 M 51 153 5 0 2 I 0 235 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 36631 37064 114 - . gene_id 3 ; sequence NvOr141 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 36912 37064 . - . KQ414772.1 exonerate:protein2genome:local exon 36912 37064 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 36910 36911 . - . intron_id 1 ; splice_site "gt" KQ414772.1 exonerate:protein2genome:local intron 36673 36911 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 36673 36674 . - . intron_id 0 ; splice_site "ag" KQ414772.1 exonerate:protein2genome:local cds 36631 36672 . - . KQ414772.1 exonerate:protein2genome:local exon 36631 36672 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 36631 37064 114 - . alignment_id 3 ; Query NvOr141 ; Align 37065 326 153 ; Align 36673 377 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr141 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 325 -> 390 Target range: 35630 -> 35196 326 : GluGlyLeuPheArgAspAlaTyrAsnAsnGlnTrpTyrGluGlySerAlaLysSerLys : 345 :!!! !|||||| ! ! !|||!:! :!!||||||.!..!!||| !!!:!!!!:!! GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 35630 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 35573 346 : ThrLeuLeuLysIleLeuThrLeuArgCysValGluProCysLeuIleThrAlaGlyGly : 365 ||||||! ! !:!! ! ! !||| !!:!! ||| |||:!!|||||||||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 35572 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 35513 366 : LeuValThrMetAsnPheAlaThrTyrLeuThr >>>> Target Intron 1 >>>> : 377 |||:!!:!!:!!|||!!.! !|||!:! ! ! 239 bp LeuIleSerLeuAsnLeuGluThrPheAlaGlu++ 35512 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGAGgt......................... : 35475 378 : IleMetLysLysSerValSerPheIleThrValPheSerSer : 390 |||:!:||| !||||||||||||...||||||.!.!.!||| ++IleLeuLysGlySerValSerPhePheThrValMetLysSer 35474 : agaTCTTAAAAGGGtccgtttcctttttcacgGTAATGAAATCG : 35197 vulgar: NvOr141 325 390 . KQ414772.1 35630 35196 - 114 M 51 153 5 0 2 I 0 235 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 35197 35630 114 - . gene_id 4 ; sequence NvOr141 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 35478 35630 . - . KQ414772.1 exonerate:protein2genome:local exon 35478 35630 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 35476 35477 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 35239 35477 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 35239 35240 . - . intron_id 0 ; splice_site "ag" KQ414772.1 exonerate:protein2genome:local cds 35197 35238 . - . KQ414772.1 exonerate:protein2genome:local exon 35197 35238 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 35197 35630 114 - . alignment_id 4 ; Query NvOr141 ; Align 35631 326 153 ; Align 35239 377 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr139 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 130 -> 218 Target range: 20580 -> 20319 131 : TyrIleValIleAlaAlaSerAlaTyrSerLeuLeuProMetAlaProValLeuLeuAsp : 150 :!!:!: !!:!! !!|||:!! !!:!! !! !:!!|||.!.||||||:!!:!!|||||| HisLeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAsp 20580 : CATTTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGAC : 20523 151 : MetIleAspProLeuAsnGluThrArgProArgLeuTyrIleLeuGlyGlyGluTyrPhe : 170 !!: !! |||||||||:!!|||||| !|||:!!!:!:!!! ! !!.! |||!:! IleTyrAlaProLeuAsnLysThrArgLysArgValPheValTyrProAla---TyrTyr 20522 : ATTTACGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCC---TATTAC : 20466 171 : IleValAspAsnValGluAspTyrGlyLysValTyrAlaPheGluLeuValProAlaAla : 190 :!!||| !! !:!! !!||| !! !:!! ! ! !:!! !! !!.! ! TrpMetAspProGluGlnTyrTyrMetIleMetIleIleHisIleMetPheValValIle 20465 : TGGATGGATCCTGAGCAATACTACATGATAATGATAATACACATAATGTTCGTGGTGATC : 20406 191 : ValThrValTrpLeuIleCysAlaValAspSerMetTyrAlaAlaSerIleGluHisCys : 210 :!!..! ! :!!.!!|||||| !|||! !! |||!.! !:!!:!::!!|||... MetValCysValIlePheCysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAla 20405 : ATGGTCTGTGTCATATTCTGTGCTTGCGACATGAACTACGTGTACGCTGTGCAGCACGCA : 20346 211 : LeuGlyLeuLeuAlaIleValLys : 218 ! !||||||||||||:!!..!!:! CysGlyLeuLeuAlaValThrArg 20345 : TGCGGCTTATTGGCTGTCACCAGG : 20320 vulgar: NvOr139 130 218 . KQ414772.1 20580 20319 - 116 M 37 111 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20320 20580 116 - . gene_id 1 ; sequence NvOr139 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20320 20580 . - . KQ414772.1 exonerate:protein2genome:local exon 20320 20580 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 20320 20580 116 - . alignment_id 1 ; Query NvOr139 ; Align 20581 131 111 ; Align 20470 169 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr139 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 123 -> 163 Target range: 45985 -> 45865 124 : LeuThrIleSerTyrIleMetTyrIleValIleAlaAlaSerAlaTyrSerLeuLeuPro : 143 |||:!!||| ! ! !:!: !||| !|||!.!!.!|||!.!!:!||| ! !||| LeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThrAlaPro 45985 : TTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCC : 45928 144 : MetAlaProValLeuLeuAspMetIleAspProLeuAsnGluThrArgProArgLeuTyr : 163 :!: !||| !!:!!||||||:!:|||...||||||||||||:!!||||||||||||||| LeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArgLeuTyr 45927 : CTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTAC : 45868 vulgar: NvOr139 123 163 . KQ414772.1 45985 45865 - 102 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45866 45985 102 - . gene_id 2 ; sequence NvOr139 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45866 45985 . - . KQ414772.1 exonerate:protein2genome:local exon 45866 45985 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45866 45985 102 - . alignment_id 2 ; Query NvOr139 ; Align 45986 124 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr138INT Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 92 -> 189 Target range: 20607 -> 20319 93 : ValValMetAsnLeuPheAlaPheGlnTyrIleIleAlaAlaCysLeuAlaTyrIleLeu : 112 :!!:!! !||| :!! !:!!:!:.!! ! !!... ! !!:!:!!! ! LeuIleSerProLeuThrSerThrAlaHisLeuPheLeuProAlaAlaIlePheLeuCys 20607 : CTTATTTCTCCTTTGACGTCTACAGCGCATTTGTTCCTTCCCGCGGCCATATTCTTATGC : 20550 113 : LeuProMetAlaProIleLeuLeuAspValPheValProLeuAsnGlnSerArgProArg : 132 :!!|||.!.|||||||||:!!||||||:!!!:!!.!|||||||||:!!!!!||| !||| ValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsnLysThrArgLysArg 20549 : GTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAACAAAACGAGAAAACGT : 20490 133 : PheTyrIleLeuGlyGlyGluTyrPheIleIleAspLysValGluAspTyrGlyLysVal : 152 ! !:!:!!! ! !!.! |||!:! !!:||| ! !:!! !!||| !! !:!! ValPheValTyrProAla---TyrTyrTrpMetAspProGluGlnTyrTyrMetIleMet 20489 : GTGTTCGTTTATCCAGCC---TATTACTGGATGGATCCTGAGCAATACTACATGATAATG : 20433 153 : TyrMetPheAspValLeuAlaValIleValSerValTrpLeuIleCysAlaValAspSer : 172 !!: ! :!!!!!!.!||||||:!! ! ! :!!.!!|||||| !|||! ! IleIleHisIleMetPheValValIleMetValCysValIlePheCysAlaCysAspMet 20432 : ATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGTGCTTGCGACATG : 20373 173 : MetTyrAlaAlaSerIleGluHisCysLeuGlyLeuPheAlaIleValLys : 189 ! |||!.! !:!!:!::!!|||...! !||||||!!.|||:!!..!!:! AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaValThrArg 20372 : AACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTCACCAGG : 20320 vulgar: NvOr138INT 92 189 . KQ414772.1 20607 20319 - 124 M 46 138 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20320 20607 124 - . gene_id 1 ; sequence NvOr138INT ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20320 20607 . - . KQ414772.1 exonerate:protein2genome:local exon 20320 20607 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 20320 20607 124 - . alignment_id 1 ; Query NvOr138INT ; Align 20608 93 138 ; Align 20470 140 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr137 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 128 -> 218 Target range: 20586 -> 20319 129 : ThrMetTyrIleIleAlaAlaPheCysSerTyrValPheLeuProIleValProValLeu : 148 ||| !:!!:!:.!! ! !! ..!! !!:!:!!! !:!!|||.!!!.!|||:!!:!! ThrAlaHisLeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIle 20586 : ACAGCGCATTTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATC : 20529 149 : LeuAspValPheAsnProLeuAsnGlnThrArgSerArgPheTyrIleLeuGlyGlyGlu : 168 ||||||:!!!:! |||||||||:!!||||||!.!||| ! !:!:!!! ! !!.! LeuAspIleTyrAlaProLeuAsnLysThrArgLysArgValPheValTyrProAla--- 20528 : TTGGACATTTACGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCC--- : 20469 169 : TyrPheIleIleAsnAsnValGluAspTyrGlyLysValTyrAlaPheAspCysLeuAla : 188 |||!:! !!::!! !! !:!! !!||| !! !:!! ! ! !!!!.! TyrTyrTrpMetAspProGluGlnTyrTyrMetIleMetIleIleHisIleMetPheVal 20468 : TATTACTGGATGGATCCTGAGCAATACTACATGATAATGATAATACACATAATGTTCGTG : 20412 189 : ValIleValThrValTrpLeuIleSerAlaValAspSerMetTyrAlaAlaSerIleGlu : 208 ||||||:!!..! ! :!!.!!!!!||| !|||! !! |||!.! !:!!:!::!! ValIleMetValCysValIlePheCysAlaCysAspMetAsnTyrValTyrAlaValGln 20411 : GTGATCATGGTCTGTGTCATATTCTGTGCTTGCGACATGAACTACGTGTACGCTGTGCAG : 20352 209 : HisCysLeuGlyLeuPheAlaIleValLys : 218 |||...! !||||||!!.|||:!!..!!:! HisAlaCysGlyLeuLeuAlaValThrArg 20351 : CACGCATGCGGCTTATTGGCTGTCACCAGG : 20320 vulgar: NvOr137 128 218 . KQ414772.1 20586 20319 - 103 M 39 117 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20320 20586 103 - . gene_id 1 ; sequence NvOr137 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20320 20586 . - . KQ414772.1 exonerate:protein2genome:local exon 20320 20586 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 20320 20586 103 - . alignment_id 1 ; Query NvOr137 ; Align 20587 129 117 ; Align 20470 169 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr143 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 124 -> 216 Target range: 20595 -> 20319 125 : LeuGlyTyrValValTyrMetValLeuAlaValIleValPheIleThrMetProTyrLeu : 144 ||| !! !..!!.!:!!:!! !!||| !!!.! !:!!|||:!! !:!!|||!:! ! LeuThrSerThrAlaHisLeuPheLeuProAlaAlaIlePheLeuCysValProPheAla 20595 : TTGACGTCTACAGCGCATTTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCA : 20538 145 : ProValValIleAspIleValPheProIleAsnGlyThrArgProArgLeuPheValLeu : 164 |||:!!:!!:!:|||||| ! |||:!:||| !|||||| !|||:!!||||||! ! ProIleIleLeuAspIleTyrAlaProLeuAsnLysThrArgLysArgValPheValTyr 20537 : CCGATCATCTTGGACATTTACGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTAT : 20478 165 : AspGlyGluTyrIleValAspLysTyrGluAsnTyrAsnLysIleTyrIlePheGluSer : 184 !.! ! ||| :!!||| ! :!! !!|||! ! !!!: ||| ! !! ! ProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMetIleMetIleIleHisIleMet 20477 : CCAGCCTATTACTGGATGGATCCTGAGCAATACTACATGATAATGATAATACACATAATG : 20418 185 : ValCysSerValValSerValProIlePheCysThrIleAspSerThrTyrAlaValCys : 204 !! !:!!:!! ! ! !|||||||||.!! !|||! !!.!|||!.! !..! PheValValIleMetValCysValIlePheCysAlaCysAspMetAsnTyrValTyrAla 20417 : TTCGTGGTGATCATGGTCTGTGTCATATTCTGTGCTTGCGACATGAACTACGTGTACGCT : 20358 205 : ValGlnGlnCysValAlaLeuLeuAlaIleValLys : 216 ||||||!!.... !!.!|||||||||:!!..!!:! ValGlnHisAlaCysGlyLeuLeuAlaValThrArg 20357 : GTGCAGCACGCATGCGGCTTATTGGCTGTCACCAGG : 20320 vulgar: NvOr143 124 216 . KQ414772.1 20595 20319 - 139 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20320 20595 139 - . gene_id 1 ; sequence NvOr143 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20320 20595 . - . KQ414772.1 exonerate:protein2genome:local exon 20320 20595 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20320 20595 139 - . alignment_id 1 ; Query NvOr143 ; Align 20596 125 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr143 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 127 -> 214 Target range: 14160 -> 13899 128 : ValValTyrMetValLeuAlaValIleValPheIleThrMetProTyrLeuProValVal : 147 :!!||| !! !:!!:!!..!||||||:!!|||:!:|||! !||| !||| !:!! IleValAsnAlaIleValCysValIleLeuPheValThrThrProValThrProHisIle 14160 : ATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATT : 14103 148 : IleAspIleValPheProIleAsnGlyThrArgProArgLeuPheValLeuAspGlyGlu : 167 :!:||||||:!!.!.|||! |||! !:!!||| ! ! !!:!:!!! ! !.! ! LeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyr 14102 : TTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTAT : 14043 168 : TyrIleValAspLysTyrGluAsnTyrAsnLysIleTyrIlePheGluSerValCysSer : 187 |||.!!..!|||:!!:!!:!! !! !! ! ||| !! ! !:!! ! ! ! TyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIle 14042 : TATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATC : 13983 188 : ValValSerValProIlePheCysThrIleAspSerThrTyrAlaValCysValGlnGln : 207 :!!||| ! !! !:!:!:! !.!! !|||!!!!:!||| ! ! !||||||!!. LeuValValPheTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHis 13982 : CTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACAC : 13923 208 : CysValAlaLeuLeuAlaIle : 214 !! !!.!|||||||||:!: GlyCysGlyLeuLeuAlaVal 13922 : GGCTGCGGATTGTTGGCCGTG : 13900 vulgar: NvOr143 127 214 . KQ414772.1 14160 13899 - 103 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13900 14160 103 - . gene_id 2 ; sequence NvOr143 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13900 14160 . - . KQ414772.1 exonerate:protein2genome:local exon 13900 14160 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13900 14160 103 - . alignment_id 2 ; Query NvOr143 ; Align 14161 128 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr142 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 330 -> 393 Target range: 12658 -> 12391 331 : IleLeuTyrAspAlaTyrAsnAsnGluTrpTyrGluCysSerLysLysThrLysThrLeu : 350 :!!! !!:!..! !|||!:! ! !||||||.!. !!..!|||!:!|||:!!:!!||| ValHisPheSerArgTyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeu 12658 : GTCCATTTTTCTAGATACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTG : 12601 351 : LeuLysPheMetMetLeuArgCysIleGluProCysGlnLeuThrAlaGlyGlyLeuTyr : 370 !!! !!!. !:!: !!.!|||:!!... !! !|||:!!||||||||||||||| ! PheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIle 12600 : TTTGTATTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATT : 12541 371 : ValMetAsnIleAlaAsnPheGlySer >>>> Target Intron 1 >>>> LeuA : 381 ..!||||||:!: !!:!|||..!..! 78 bp :!!! ThrMetAsnLeuGlnSerPheSerGlu++ ++IleV 12540 : ACAATGAACTTGCAAAGTTTCTCAGAGgt.........................agATTG : 12430 382 : laLysThrSerMetSerTyrIleThrValPheAlaSer : 393 .!|||||||||:!:|||||| !! !|||.!. !||| alLysThrSerValSerTyrTyrMetValLeuLysSer 12429 : TAAAGACGTCTGTCTCGTACTACATGGTACTGAAATCC : 12392 vulgar: NvOr142 330 393 . KQ414772.1 12658 12391 - 124 M 49 147 5 0 2 I 0 74 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 12392 12658 124 - . gene_id 1 ; sequence NvOr142 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 12512 12658 . - . KQ414772.1 exonerate:protein2genome:local exon 12512 12658 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 12510 12511 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 12434 12511 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 12434 12435 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 12392 12433 . - . KQ414772.1 exonerate:protein2genome:local exon 12392 12433 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 12392 12658 124 - . alignment_id 1 ; Query NvOr142 ; Align 12659 331 147 ; Align 12434 380 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr140 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 328 -> 378 Target range: 28671 -> 28521 329 : LeuPheGluAspAlaTyrSerAsnGluTrpTyrGluThrSerIleArgSerGlnAsnLeu : 348 ||||||! ! !|||||| :!!||||||.!.!:!||| |||!!!|||!.!||| LeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGlnThrLeu 28671 : TTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAAACTCTG : 28614 349 : LeuLysPheMetArgLeuArgCysLeuThrProCysGlnLeuThrAlaGlyGlyIleTyr : 368 ! ! !.!. ! !||| !!||||||||| !|||||||||||||||:!: ! TyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGlyLeuIle 28613 : TACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGATT : 28554 369 : ValMetAsnPheAlaAsnPheAlaSerIle : 378 !:!!|||!!.! !!.!||||||...::: SerLeuAsnLeuGluThrPheAlaGluVal 28553 : TCCTTGAATTTGGAGACTTTTGCCGaggta : 28522 vulgar: NvOr140 328 378 . LHQN01017803.1 28671 28521 - 101 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 28522 28671 101 - . gene_id 1 ; sequence NvOr140 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 28522 28671 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28522 28671 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 28522 28671 101 - . alignment_id 1 ; Query NvOr140 ; Align 28672 329 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr140 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 128 -> 215 Target range: 26252 -> 25994 129 : MetTyrMetThrSerAlaLeuLeuPhePheIleIleLeuProIleThrProMetValLeu : 148 :!!:!!!!::!!! !..! ! !.!.|||!!: !||||||.!!..! !! !:!!||| ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeu 26252 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTG : 26195 149 : AsnValIleLysProLeuAsnGluSerArgProTrpAspPheIleMetHisGlyGluPhe : 168 :!!:!!:!!! !||||||||||||!!!||| !! !! |||:!! ! !.! ! !:! AspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyr 26194 : GACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTAT : 26135 169 : ProValAsnAspMetHisAlaHisTyrGlyGluIleTyrLeuPheAspSerLeuAlaCys : 188 !|||:!!!!: ! !|||||| !||| ! ! ! !|||!.! PheValAspGluAspLysTyrHisTyr---LeuIleValGlyHisMetTyrLeuValVal 26134 : TTCGTCGACGAGGACAAATATCATTAC---TTGATCGTAGGGCATATGTATCTTGTAGTG : 26078 189 : IleAlaThrValLeuValPheCysThrValAspSerMetTyrAlaThrCysIleGluHis : 208 :!! ! !:!!! !|||||||||.!! !|||:!!! |||!.! !..!:!::!!||| ValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHis 26077 : GTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACAC : 26018 209 : CysIleGlyLeuPheAlaIle : 215 ..! !||||||!!.|||||| AlaCysGlyLeuLeuAlaIle 26017 : GCTTGCGGATTGTTGGCCATT : 25995 vulgar: NvOr140 128 215 . LHQN01017803.1 26252 25994 - 101 M 49 147 G 1 0 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25995 26252 101 - . gene_id 2 ; sequence NvOr140 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25995 26252 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25995 26252 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25995 26252 101 - . alignment_id 2 ; Query NvOr140 ; Align 26253 129 147 ; Align 26106 179 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr140 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 333 -> 393 Target range: 12646 -> 12466 334 : TyrSerAsnGluTrpTyrGluThrSerIleArgSerGlnAsnLeuLeuLysPheMetArg : 353 |||!:! ! !||||||.!.!:!..!! |||!!!|||:::|||!!! !!!. ! TyrAsnAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeu 12646 : TACAACGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCATTA : 12589 354 : LeuArgCysLeuThrProCysGlnLeuThrAlaGlyGlyIleTyrValMetAsnPheAla : 373 !!.!||||||:!! !! !|||:!!||||||||||||:!! !..!||||||!!. ! ArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGln 12588 : AGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAA : 12529 374 : AsnPheAlaSerIleIleLysThrSerThrSerTyrIleThrValPheAlaSerPheThr : 393 !:!|||:!!..!:!!! !::::!!||||||! ! !:!! !:!!! ! !..!!:!:!! SerPheSerGluValThrArgSerSerThrIleIleLeuLeuIleSerArgGluTyrSer 12528 : AGTTTCTCAGAGGTAACTCGTTCATCGACAATTATTCTTCTAATATCTCGAGAATATTCA : 12469 vulgar: NvOr140 333 393 . LHQN01017803.1 12646 12466 - 101 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 12467 12646 101 - . gene_id 3 ; sequence NvOr140 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 12467 12646 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12467 12646 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 12467 12646 101 - . alignment_id 3 ; Query NvOr140 ; Align 12647 334 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr141 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 156 Query range: 92 -> 223 Target range: 14367 -> 13909 93 : LeuTyrAspSerValAlaLysAsnTrpLysAsnIleThrGluLysHisGluArgGluIle : 112 ||| !..!.!!!.! !!!.:!!|||..!! ! ! ! !:!! |||! !!!:||| LeuIleSerGlyAlaArgAsnAspTrpSerIleGluArgProGlnGlyGluIleAspIle 14367 : CTTATTAGCGGTGCCAGGAACGACTGGTCGATCGAGAGACCACAAGGGGAGATCGACATT : 14310 113 : LeuValLysTyrSerGluArgGlyArgMetLeuThrLeuGlyTyrIle{T} >>>> Ta : 129 :!!..!||||||:!!||||||||| ...||| |||:!!{.} MetThrLysTyrAlaGluArgGlyAlaPheLeuIleSerThrTyrLeu{A}++ 14309 : ATGACTAAATACGCCGAGAGGGGtgcttttttaatttcgacaTACCTT{G}gt....... : 14256 130 : rget Intron 1 >>>> {hr}TyrAsnPheAlaAlaValIleValTyrThrThrMet : 141 65 bp {!!} !! .!!!.!..!||||||:!!!:!..!:!!! ! ++{la}AsnAlaIleValCysValIleLeuPheValSerThr 14255 : ..................ag{CG}AACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACG : 14158 142 : ProLeuMetProPheLeuLeuAspIleIleLeuProLeuAsnGluSerArgProSerMet : 161 |||:!!! ||| !:!!|||||||||:!!|||||| !|||||||||||| ! ! ! ProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAla 14157 : CCGGTGACACCGCATATTTTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCG : 14098 162 : PheIleLeuAsnGlyGlnPheTyrValAspLysHisGluHisTyrLysLysLeuTyrAla : 181 !:!|||! ! !.! ! !:!!:!..!|||:!!|||:!!:!! !! ! ! :!! !.!! TyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThr 14097 : TACATTTATCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACG : 14038 182 : PheAspCysLeuCysIlePheValIleValProAlaAlaLeuAlaValAspThrMetTyr : 201 ! ...! ! |||.!!|||:!: !! !!.! !:!!||| !||||||! ||| HisMetAlaSerValIleLeuValValPheTyrValTyrValAlaCysAspThrSerTyr 14037 : CACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTAC : 13978 202 : ValAlaCysThrGluHisCysLeuGlyLeuPheAlaIleIleLysTyrArgLeuAlaMet : 221 :!! ! !..!:!!||| !!! !||||||!!.|||:!: ! :::::: IleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly***LysIleArgSer 13977 : ATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaattcgatcg : 13918 222 : SerAsp : 223 :::||| AsnAsp 13917 : aacgat : 13910 vulgar: NvOr141 92 223 . LHQN01017803.1 14367 13909 - 156 M 36 108 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13910 14367 156 - . gene_id 1 ; sequence NvOr141 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 14259 14367 . - . LHQN01017803.1 exonerate:protein2genome:local exon 14259 14367 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 14257 14258 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 14194 14258 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 14194 14195 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 13910 14193 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13910 14193 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13910 14367 156 - . alignment_id 1 ; Query NvOr141 ; Align 14368 93 108 ; Align 14192 130 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr141 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 136 -> 214 Target range: 26228 -> 25994 137 : ValTyrThrThrMetProLeuMetProPheLeuLeuAspIleIleLeuProLeuAsnGlu : 156 :!!!:!! ! !:!!|||!!!:!! !! :!!|||||||||:!!:!!|||||||||||| LeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGlu 26228 : CTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAG : 26171 157 : SerArgProSerMetPheIleLeuAsnGlyGlnPheTyrValAspLysHisGluHisTyr : 176 !!!||| !! !!:!!|||:!!! ! !.! ! !:!!:!||||||:!! !!:!!:!!:!! ThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHis 26170 : ACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCAT : 26111 177 : LysLysLeuTyrAlaPheAspCysLeuCysIlePheValIleValProAlaAlaLeuAla : 196 ! !:!! !.! ! ! !||| :!: ! :!!:!!:!! !!!.! !! !||| TyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 26110 : TACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 26051 197 : ValAspThrMetTyrValAlaCysThrGluHisCysLeuGlyLeuPheAlaIle : 214 !|||.!!! |||||| !..!..!:!!|||..!! !||||||!!.|||||| CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 26050 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 25995 vulgar: NvOr141 136 214 . LHQN01017803.1 26228 25994 - 122 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25995 26228 122 - . gene_id 2 ; sequence NvOr141 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25995 26228 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25995 26228 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25995 26228 122 - . alignment_id 2 ; Query NvOr141 ; Align 26229 137 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr141 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 131 -> 187 Target range: 33705 -> 33537 132 : PheAlaAlaValIleValTyrThrThrMetProLeuMetProPheLeuLeuAspIleIle : 151 !:! !!.!||| !|||!:!:!!||| !||||||!!:||||||:!!||||||:!!||| TyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeuAspLeuIle 33705 : TACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTGGACCTAATT : 33648 152 : LeuProLeuAsnGluSerArgProSerMetPheIleLeuAsnGlyGlnPheTyrValAsp : 171 ! !||||||||||||||||||||| !!:!!!:! !! !!!.!.! ! ! !||| !!:!! SerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyrCysTyrPheAsn 33647 : TCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTACTGTTACTTCAAT : 33588 172 : LysHisGluHisTyrLysLysLeuTyrAlaPheAspCysLeuCysIle : 187 ! !!!!::!!||| ! ! :!! !.!!:! ! !! !|||||| ProAspAspTyrTyrTyrTyrValValGlyTyrThrSerAlaCysIle 33587 : CCGGACGACTACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATA : 33538 vulgar: NvOr141 131 187 . LHQN01017803.1 33705 33537 - 119 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33538 33705 119 - . gene_id 3 ; sequence NvOr141 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33538 33705 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33538 33705 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33538 33705 119 - . alignment_id 3 ; Query NvOr141 ; Align 33706 132 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr141 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 325 -> 390 Target range: 28677 -> 28243 326 : GluGlyLeuPheArgAspAlaTyrAsnAsnGlnTrpTyrGluGlySerAlaLysSerLys : 345 :!!! !|||||| ! ! !|||!:! :!!||||||.!..!!||| !!!:!!!!:!! GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 28677 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 28620 346 : ThrLeuLeuLysIleLeuThrLeuArgCysValGluProCysLeuIleThrAlaGlyGly : 365 ||||||! ! !:!! ! ! !||| !!:!! ||| |||:!!|||||||||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 28619 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 28560 366 : LeuValThrMetAsnPheAlaThrTyrLeuThr >>>> Target Intron 1 >>>> : 377 |||:!!:!!:!!|||!!.! !|||!:! ! 239 bp LeuIleSerLeuAsnLeuGluThrPheAlaGlu++ 28559 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGaggt......................... : 28522 378 : IleMetLysLysSerValSerPheIleThrValPheSerSer : 390 |||:!:||| !||||||||||||...||||||.!.!.!||| ++IleLeuLysAlaSerValSerPhePheThrValMetLysSer 28521 : agaTCTTAAAAGCAtccgtttcctttttcacgGTAATGAAATCG : 28244 vulgar: NvOr141 325 390 . LHQN01017803.1 28677 28243 - 115 M 51 153 5 0 2 I 0 235 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 28244 28677 115 - . gene_id 4 ; sequence NvOr141 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 28525 28677 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28525 28677 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 28523 28524 . - . intron_id 1 ; splice_site "gt" LHQN01017803.1 exonerate:protein2genome:local intron 28286 28524 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 28286 28287 . - . intron_id 0 ; splice_site "ag" LHQN01017803.1 exonerate:protein2genome:local cds 28244 28285 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28244 28285 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 28244 28677 115 - . alignment_id 4 ; Query NvOr141 ; Align 28678 326 153 ; Align 28286 377 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr143 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 129 Query range: 331 -> 389 Target range: 12646 -> 12394 332 : TyrAsnAsnGluTrpTyrGluCysSerIleLysSerGlnArgLeuLeuAlaPheMetMet : 351 |||||| ! !||||||.!. !!..!! !:!!!!||| !|||!!!!.!!!. :!: TyrAsnAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeu 12646 : TACAACGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCATTA : 12589 352 : LeuArgCysThrLysProCysGluLeuThrAlaGlyGlyIleTyrThrMetAsnLeuGlu : 371 !!.!||| !... !! !:!!:!!||||||||||||:!! !||||||||||||:!! ArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGln 12588 : AGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAA : 12529 372 : AsnPheGlySer >>>> Target Intron 1 >>>> LeuValLysThrSerIleS : 382 !:!|||..!..! 78 bp :!!||||||||||||:!!| SerPheSerGlu++ ++IleValLysThrSerValS 12528 : AGTTTCTCAGAGgt.........................agATTGTAAAGACGTCTGTCT : 12418 383 : erTyrIleAlaValPheAlaSer : 389 ||||| ! !|||.!. !||| erTyrTyrMetValLeuLysSer 12417 : CGTACTACATGGTACTGAAATCC : 12395 vulgar: NvOr143 331 389 . LHQN01017803.1 12646 12394 - 129 M 44 132 5 0 2 I 0 74 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 12395 12646 129 - . gene_id 1 ; sequence NvOr143 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 12515 12646 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12515 12646 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 12513 12514 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 12437 12514 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 12437 12438 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 12395 12436 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12395 12436 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 12395 12646 129 - . alignment_id 1 ; Query NvOr143 ; Align 12647 332 132 ; Align 12437 376 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr143 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 322 -> 386 Target range: 28683 -> 27590 323 : ArgSerSerAlaIlePheAsnAspAlaTyrAsnAsnGluTrpTyrGluCysSerIleLys : 342 |||! !..!! !:!:||| ! ! !|||!:! :!!||||||.!. !!||| !:! ArgPheGlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArg 28683 : AGATTTCAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGA : 28626 343 : SerGlnArgLeuLeuAlaPheMetMetLeuArgCysThrLysProCysGluLeuThrAla : 362 !!!|||! !|||! !!.!.!. :!! !||| !! !! ||| !||||||||| ThrGlnThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAla 28625 : ACGCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCG : 28566 363 : GlyGlyIleTyrThrMetAsnLeuGluAsnPheGlySer >>>> Target Intron : 376 ||||||:!: !:!!:!!|||||||||!.!|||!.!... 901 bp GlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGlu++ 28565 : GGAGGACTGATTTCCTTGAATTTGGAGACTTTTGCCGaggt................... : 28522 377 : 1 >>>> LeuValLysThrSerIleSerTyrIleAlaVal : 386 !:!!||||||||||||||||||.!!|||||| ++ThrLeuLysThrSerIleSerTyrPheAlaVal 28521 : ......agACTTTAAAAACTTCAATCTCCTATTTCGCGGTA : 27591 vulgar: NvOr143 322 386 . LHQN01017803.1 28683 27590 - 105 M 53 159 5 0 2 I 0 897 3 0 2 M 11 33 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 27591 28683 105 - . gene_id 2 ; sequence NvOr143 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 28525 28683 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28525 28683 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 28523 28524 . - . intron_id 1 ; splice_site "gt" LHQN01017803.1 exonerate:protein2genome:local intron 27624 28524 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 27624 27625 . - . intron_id 0 ; splice_site "aG" LHQN01017803.1 exonerate:protein2genome:local cds 27591 27623 . - . LHQN01017803.1 exonerate:protein2genome:local exon 27591 27623 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 27591 28683 105 - . alignment_id 2 ; Query NvOr143 ; Align 28684 323 159 ; Align 27624 376 33 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr142 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 330 -> 393 Target range: 12661 -> 12394 331 : IleLeuTyrAspAlaTyrAsnAsnGluTrpTyrGluCysSerLysLysThrLysThrLeu : 350 :!!! !!:!..! !|||||| ! !||||||.!. !!..!|||!:!|||:!!:!!||| ValHisPheSerArgTyrAsnAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeu 12661 : GTCCATTTTTCTAGATACAACGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTG : 12604 351 : LeuLysPheMetMetLeuArgCysIleGluProCysGlnLeuThrAlaGlyGlyLeuTyr : 370 !!! !!!. :!: !!.!|||:!!... !! !|||:!!||||||||||||||| ! PheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIle 12603 : TTTGTATTAGCATTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATT : 12544 371 : ValMetAsnIleAlaAsnPheGlySer >>>> Target Intron 1 >>>> LeuA : 381 ..!||||||:!: !!:!|||..!..! 78 bp :!!! ThrMetAsnLeuGlnSerPheSerGlu++ ++IleV 12543 : ACAATGAACTTGCAAAGTTTCTCAGAGgt.........................agATTG : 12433 382 : laLysThrSerMetSerTyrIleThrValPheAlaSer : 393 .!|||||||||:!:|||||| !! !|||.!. !||| alLysThrSerValSerTyrTyrMetValLeuLysSer 12432 : TAAAGACGTCTGTCTCGTACTACATGGTACTGAAATCC : 12395 vulgar: NvOr142 330 393 . LHQN01017803.1 12661 12394 - 131 M 49 147 5 0 2 I 0 74 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 12395 12661 131 - . gene_id 1 ; sequence NvOr142 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 12515 12661 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12515 12661 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 12513 12514 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 12437 12514 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 12437 12438 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 12395 12436 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12395 12436 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 12395 12661 131 - . alignment_id 1 ; Query NvOr142 ; Align 12662 331 147 ; Align 12437 380 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr139 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 129 Query range: 129 -> 216 Target range: 26252 -> 25994 130 : MetTyrIleValIleAlaAlaSerAlaTyrSerLeuLeuProMetAlaProValLeuLeu : 149 :!!:!!||| !:!!..!|||:!! !!:!! !! !||||||.!.!.! !! !:!!||| ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeu 26252 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTG : 26195 150 : AspMetIleAspProLeuAsnGluThrArgProArgLeuTyrIleLeuGlyGlyGluTyr : 169 |||!!::!! |||||||||||||||||| !!||||||!:!:!!! ! !!.! ! ||| AspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyr 26194 : GACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTAT : 26135 170 : PheIleValAspAsnValGluAspTyrGlyLysValTyrAlaPheGluLeuValProAla : 189 |||:!!! !!!::!! ! ! !!||| !! ||| !.!. ! |||||| !.! PheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuVal---Val 26134 : TTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTA---GTG : 26078 190 : AlaValThrValTrpLeuIleCysAlaValAspSerMetTyrAlaAlaSerIleGluHis : 209 !.!:!! !:!!! :!!.!!|||||| !|||:!!! |||!.! !:!!:!::!!||| ValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHis 26077 : GTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACAC : 26018 210 : CysLeuGlyLeuLeuAlaIle : 216 ..!! !||||||||||||||| AlaCysGlyLeuLeuAlaIle 26017 : GCTTGCGGATTGTTGGCCATT : 25995 vulgar: NvOr139 129 216 . LHQN01017803.1 26252 25994 - 129 M 58 174 G 1 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25995 26252 129 - . gene_id 1 ; sequence NvOr139 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25995 26252 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25995 26252 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25995 26252 129 - . alignment_id 1 ; Query NvOr139 ; Align 26253 130 174 ; Align 26079 189 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr139 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 123 -> 163 Target range: 33732 -> 33612 124 : LeuThrIleSerTyrIleMetTyrIleValIleAlaAlaSerAlaTyrSerLeuLeuPro : 143 |||:!!||| ! ! !:!: !||| !|||!.!!.!|||!.!!:!||| ! !||| LeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThrAlaPro 33732 : TTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCC : 33675 144 : MetAlaProValLeuLeuAspMetIleAspProLeuAsnGluThrArgProArgLeuTyr : 163 :!: !||| !!:!!||||||:!:|||...||||||||||||:!!||||||||||||||| LeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArgLeuTyr 33674 : CTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTAC : 33615 vulgar: NvOr139 123 163 . LHQN01017803.1 33732 33612 - 102 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33613 33732 102 - . gene_id 2 ; sequence NvOr139 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33613 33732 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33613 33732 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33613 33732 102 - . alignment_id 2 ; Query NvOr139 ; Align 33733 124 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr137 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 332 -> 386 Target range: 12634 -> 12394 333 : TrpTyrThrCysProThrArgAlaGlnLysLeuLeuGlyLeuMetThrLeuArgCysSer : 352 ||||||!.! !! !! !|||.!!|||..!|||!!!! !||| ! !!.!||| ! TrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeuArgAsnCysLeu 12634 : TGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCATTAAGAAATTGTCTA : 12577 353 : LysProCysGlnLeuThrAlaGlyGlyMetTyrValMetAsnPheSerAsnPheAlaLys : 372 ... !! !|||:!!||||||||||||:!: !..!||||||!!...!!:!|||:!!:!! SerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGlnSerPheSerGlu 12576 : TCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAAAGTTTCTCAGAG : 12517 373 : >>>> Target Intron 1 >>>> IleValLysThrSerMetSerTyrMetThrV : 383 78 bp |||||||||||||||:!:|||||| ! !| ++ ++IleValLysThrSerValSerTyrTyrMetV 12516 : gt.........................agATTGTAAAGACGTCTGTCTCGTACTACATGG : 12406 384 : alLeuAlaSer : 386 ||||| !||| alLeuLysSer 12405 : TACTGAAATCC : 12395 vulgar: NvOr137 332 386 . LHQN01017803.1 12634 12394 - 120 M 40 120 5 0 2 I 0 74 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 12395 12634 120 - . gene_id 1 ; sequence NvOr137 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 12515 12634 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12515 12634 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 12513 12514 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 12437 12514 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 12437 12438 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 12395 12436 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12395 12436 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 12395 12634 120 - . alignment_id 1 ; Query NvOr137 ; Align 12635 333 120 ; Align 12437 373 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr137 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 128 -> 216 Target range: 26255 -> 25994 129 : ThrMetTyrIleIleAlaAlaPheCysSerTyrValPheLeuProIleValProValLeu : 148 |||:!!:!!||| !..! !..! !!:!:!!! !||||||.!!||| !! !:!! ThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIle 26255 : ACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATT : 26198 149 : LeuAspValPheAsnProLeuAsnGlnThrArgSerArgPheTyrIleLeuGlyGlyGlu : 168 ||||||:!!.!!! |||||||||:!!||||||:!!|||!!.!:!:!!! ! !!.! ! LeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyr 26197 : CTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTAC : 26138 169 : TyrPheIleIleAsnAsnValGluAspTyrGlyLysValTyrAlaPheAspCysLeuAla : 188 ||||||:!! !.!.:!! ! ! !!||| !:!! !.! ! ! !|||!.! TyrPheValAspGluAspLysTyrHisTyr---LeuIleValGlyHisMetTyrLeuVal 26137 : TATTTCGTCGACGAGGACAAATATCATTAC---TTGATCGTAGGGCATATGTATCTTGTA : 26081 189 : ValIleValThrValTrpLeuIleSerAlaValAspSerMetTyrAlaAlaSerIleGlu : 208 |||:!!:!! !:!!! :!!.!!!!!||| !|||:!!! |||!.! !:!!:!::!! ValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGln 26080 : GTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAA : 26021 209 : HisCysLeuGlyLeuPheAlaIle : 216 |||..!! !||||||!!.|||||| HisAlaCysGlyLeuLeuAlaIle 26020 : CACGCTTGCGGATTGTTGGCCATT : 25995 vulgar: NvOr137 128 216 . LHQN01017803.1 26255 25994 - 115 M 50 150 G 1 0 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25995 26255 115 - . gene_id 2 ; sequence NvOr137 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25995 26255 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25995 26255 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25995 26255 115 - . alignment_id 2 ; Query NvOr137 ; Align 26256 129 150 ; Align 26106 180 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr132 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 129 Query range: 128 -> 214 Target range: 26252 -> 25994 129 : MetTyrMetMetThrAlaLeuIleValPheIleLeuLeuProMetTyrProIleMetThr : 148 :!!:!!!!: ! !..! ! !:!!|||!!:! !||||||.!. !! !!: ! ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeu 26252 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTG : 26195 149 : AspValIleValProLeuAspHisProArgAlaArgMetPheIleLeuAsnGlyAspTyr : 168 |||:!!:!!:!!||||||:!!.!. !!|||||||||:!!|||:!!! ! !.! !!||| AspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyr 26194 : GACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTAT : 26135 169 : LeuValAspArgAspGluTyrTyrPheGlnIleTyrValPheGluSerThrSerAlaAla : 188 !!!||||||..!|||:!!|||:!!!:! !||| ! ! ! !! ! ! !!.!!.! PheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValVal 26134 : TTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTA : 26075 189 : LeuThrValPheIleLeuCysSerThrAspProMetTyrAlaAlaIleValGluHisCys : 208 :!! !:!!! !:!!!!!|||:!! !||| !!! |||!.! ! !|||:!!|||..! MetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAla 26074 : ATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCT : 26015 209 : LeuGlyLeuPheCysIle : 214 ! !||||||!!...!||| CysGlyLeuLeuAlaIle 26014 : TGCGGATTGTTGGCCATT : 25995 vulgar: NvOr132 128 214 . LHQN01017803.1 26252 25994 - 129 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25995 26252 129 - . gene_id 1 ; sequence NvOr132 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25995 26252 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25995 26252 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25995 26252 129 - . alignment_id 1 ; Query NvOr132 ; Align 26253 129 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr132 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 128 -> 223 Target range: 471552 -> 471837 129 : MetTyrMetMetThrAlaLeuIleValPheIleLeuLeuProMetTyrProIleMetT : 148 .!.||| ! !!.! !||||||..! !:!!:!!||| !!|||! |||:!!!!: PheTyrTyrThrAsnLeuLeuIleThrSerValIleLeuSerMetSerProLeuIleL 471553 : TTCTATTACACGAATCTACTCATTACTAGTGTAATACTGTCCATGTCGCCTCTTATTC : 471610 149 : hrAspValIleValProLeuAspHisProArgAlaArgMetPheIleLeuAsnGlyAs : 167 !|||:!!|||:!!||||||:!! !!||| !!||| ||| !!!!!.. !|| euAspIleIleIleProLeuAsnThrSerArgProArgTyrPheProPheThrPheAs 471611 : TCGATATTATAATACCTCTGAACACGTCACGTCCACGTTACTTTCCATTTACGTTCGA : 471667 168 : pTyrLeuValAspArgAspGluTyrTyrPheGlnIleTyrValPheGluSerThrSer : 186 |!:!:!! !:!!!:!!!:||||||!:!! ! !||| !:!!|||....!!! !! ! pPheIleProAsnGlnGluGluTyrPhe***ProIleThrIlePheSerGlyIleLeu 471668 : TTTCATTCCCAATCAAGAGGAATACTTCTAACCGATTACTATCTTTTCTGGCATATTG : 471724 187 : AlaAlaLeuThrValPheIleLeuCysSerThrAspProMetTyrAlaAlaIleValG : 206 ..! !! ! !:!! !:!! |||!:!!!: !:!! ! ! !! !||| CysIleCysGlyLeuAlaAlaMetIleSerSerGluGlyLeuLeuMetMetAsnValL 471725 : TGCATTTGTGGATTAGCAGCAATGATAAGTAGCGAGGGTCTGCTTATGATGAATGTTT : 471784 207 : luHisCysLeuGlyLeuPheCysIleCysLysTyrArgLeuAsnAsnPheAsn : 223 !||| ! !||||||!:! !|||..!! !! !||| :!!|||||| euHisValArgGlyLeuTyrAsnIleAlaThr***ValLeuLeuHisPheAsn 471785 : TACACGTACGTGGATTGTATAACATCGCTACGTGAGTACTATTACATTTCAAT : 471837 vulgar: NvOr132 128 223 . KQ414815.1 471552 471837 + 116 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471553 471837 116 + . gene_id 1 ; sequence NvOr132 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471553 471837 . + . KQ414815.1 exonerate:protein2genome:local exon 471553 471837 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471553 471837 116 + . alignment_id 1 ; Query NvOr132 ; Align 471553 129 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr132 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 121 -> 214 Target range: 485647 -> 485926 122 : LeuIleThrLeuValPheIleMetTyrMetMetThrAlaLeuIleValPheIleLeuL : 141 |||! !.! !:!!.!! !:!: !!!: !!:!!|||:!!|||.!.|||||| LeuThrAsnSerIleIleAlaValIleIleGlyProSerLeuLeuValLeuIleLeuG 485648 : TTAACGAACAGTATTATTGCAGTAATTATCGGTCCATCGTTACTTGTGCTGATTCTTG : 485705 142 : euProMetTyrProIleMetThrAspValIleValProLeuAspHisProArgAlaAr : 160 ! !.!. !! !! !!!: !|||:!!:!::!!||||||:!!:!! !!||| !!|| lyIlePheAsnAsnSerIleLeuAspIleLeuIleProLeuAsnTyrThrArgProAr 485706 : GTATATTTAACAACAGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCG : 485762 161 : gMetPheIleLeuAsnGlyAspTyrLeuValAspArgAspGluTyrTyrPheGlnIle : 179 |! !.!! !:!!|||..!!!::!!!!!||||||!:!.!.:!!|||!:!!:!! ||| gThrIleProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIle 485763 : GACGATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATT : 485819 180 : TyrValPheGluSerThrSerAlaAlaLeuThrValPheIleLeuCysSerThrAspP : 199 !.! !! ! !! !!.! !:!! !!.!.!.:!!||| !||||||::: AlaAlaHisValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluI 485820 : GCAGCACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaa : 485879 200 : roMetTyrAlaAlaIleValGluHisCysLeuGlyLeuPheCysIle : 214 ::: ||||||:!!:!!||| !! !||||||!:! ||| leLeuIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIle 485880 : tattaattatggCGATAATACAGCACACCTGTGGTTTGTATACAATC : 485926 vulgar: NvOr132 121 214 . KQ414815.1 485647 485926 + 116 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485648 485926 116 + . gene_id 2 ; sequence NvOr132 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485648 485926 . + . KQ414815.1 exonerate:protein2genome:local exon 485648 485926 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485648 485926 116 + . alignment_id 2 ; Query NvOr132 ; Align 485648 122 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr142 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 2 -> 52 Target range: 447014 -> 447164 3 : MetAspPheTyrAsnSerArgTyrPheSerIleAsnArgArgMetMetThrIleMetG : 22 ||||||||| !...! !..!|||!:!|||:!!|||!:!!:!:!::!!|||:!::!:| MetAspPheLeuGlyTyrGluTyrTyrSerLeuAsnGlnGlnLeuLeuThrLeuValG 447015 : ATGGACTTCCTCGGGTACGAGTACTATAGCCTCAATCAACAGCTTTTGACGTTGGTCG : 447072 23 : lyLeuTrpProTyrGlnAspPheLysThrLysLeuPheIleArgThrPheLeuAlaIl : 41 ||||||||||||||:!! !:!||| !! !!!!.!! !!.!|||!:!:!! !.! lyLeuTrpProTyrLysArgTyrLysLeuThrPheLeuTyrAsnThrTyrMetLeuPh 447073 : GACTGTGGCCGTACAAGAGGTACAAGTTGACATTCCTTTACAATACCTACATGCTGTT : 447129 42 : eValLeuGlyIleAlaLeuIleProGlnIleIle : 52 ! !!!!! !! !|||!!!.!!! !|||:!!:!! ePhePheIleThrAlaPhePheLeuGlnValLeu 447130 : CTTCTTCATCACCGCTTTCTTTCTTCAGGTACTT : 447164 vulgar: NvOr142 2 52 . KQ414815.1 447014 447164 + 103 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 447015 447164 103 + . gene_id 1 ; sequence NvOr142 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 447015 447164 . + . KQ414815.1 exonerate:protein2genome:local exon 447015 447164 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 447015 447164 103 + . alignment_id 1 ; Query NvOr142 ; Align 447015 3 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr141 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 130 -> 216 Target range: 457159 -> 457417 131 : AsnPheAlaAlaValIleValTyrThrThrMetProLeuMetProPheLeuLeuAspI : 150 !.!!:!..!!.!!.!:!:||| !||||||:!!! !|||.!.|||.!.|||||||||| ThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspI 457160 : ACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACA : 457217 151 : leIleLeuProLeuAsnGluSerArgProSerMetPheIleLeuAsnGlyGlnPheTy : 169 ||:!::!!|||||||||||||||||||||!!! !!!. !|||!..!.!:!!!:!!: leValValProLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPh 457218 : TTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTT : 457274 170 : rValAspLysHisGluHisTyrLysLysLeuTyrAlaPheAspCysLeuCysIlePhe : 188 !||||||! ! ! :!!:!! ! ! :!! !||| ! ! ! !|||:!!.!. eValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeu 457275 : TGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTG : 457331 189 : ValIleValProAlaAlaLeuAlaValAspThrMetTyrValAlaCysThrGluHisC : 208 :!! !.! !!.!! ! !||| !!!::!!:!: !:!!.!! !..! !||| IleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisV 457332 : ATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACG : 457391 209 : ysLeuGlyLeuPheAlaIleIleLys : 216 !! !||||||||| !:!!! !!:! alCysGlyLeuPheLysLeuThrArg 457392 : TTTGTGGATTGTTCAAGCTTACTAGG : 457417 vulgar: NvOr141 130 216 . KQ414815.1 457159 457417 + 140 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457160 457417 140 + . gene_id 1 ; sequence NvOr141 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457160 457417 . + . KQ414815.1 exonerate:protein2genome:local exon 457160 457417 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457160 457417 140 + . alignment_id 1 ; Query NvOr141 ; Align 457160 131 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr141 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 131 -> 235 Target range: 481986 -> 482298 132 : PheAlaAlaValIleValTyrThrThrMetProLeuMetProPheLeuLeuAspIleI : 151 !:! !!:!!|||:!::!! ! ! ! ! !:!! ! !|||:!!||||||:!!| TyrProSerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspValI 481987 : TATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCA : 482044 152 : leLeuProLeuAsnGluSerArgProSerMetPheIleLeuAsnGlyGlnPheTyrVa : 170 ||:!!||||||||||||!!!||| !! !...||| !:!!::: !:!!!:!!:!:! leValProLeuAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPheIl 482045 : TTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCAT : 482101 171 : lAspLysHisGluHisTyrLysLysLeuTyrAlaPheAspCysLeuCysIlePheVal : 189 !|||:!!!!.:!!:!!! :!! ! !.!.!! !!!! !.!!.!!||| eAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuVal 482102 : TGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTA : 482158 190 : IleValProAlaAlaLeuAlaValAspThrMetTyrValAlaCysThrGluHisCysL : 209 :!!!.! !! ! !:!!!.!:!!!!:|||:!! !||| !!! !||||||..! ValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaA 482159 : GTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTG : 482218 210 : euGlyLeuPheAlaIleIleLysTyrArgLeuAlaMetSerAspLysPheIleSerTh : 228 !.!!||||||.!!:!!:!!!:!!! !.!! !!.!|||!:!:!! !!.!! ! !|| laSerLeuPheThrLeuValArg***AsnCysGlyMetAsnAsn***LeuSerValTh 482219 : CAAGCTTGTTCACCCTTGTAAGGTAAAATTGCGGGATGAATAATTAACTCTCTGTAAC : 482275 229 : rArgAspIleTyrLeuThrGlu : 235 | ||||||::: ::: rProPheIleTyrIleLeuGln 482276 : Accatttatctatattttacaa : 482298 vulgar: NvOr141 131 235 . KQ414815.1 481986 482298 + 120 M 104 312 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481987 482298 120 + . gene_id 2 ; sequence NvOr141 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481987 482298 . + . KQ414815.1 exonerate:protein2genome:local exon 481987 482298 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481987 482298 120 + . alignment_id 2 ; Query NvOr141 ; Align 481987 132 312 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr141 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 146 -> 216 Target range: 475566 -> 475776 147 : LeuLeuAspIleIleLeuProLeuAsnGluSerArgProSerMetPheIleLeuAsnG : 166 :!!|||||| !:!:||||||||||||||||||||||||||| !! !:!::::... IleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleArgI 475567 : ATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaa : 475624 167 : lyGlnPheTyrValAspLysHisGluHisTyrLysLysLeuTyrAlaPheAspCysLe : 185 ::::::::::::::::!!!!.:!!:!!!:! ! ! ! !!:!.!. !:! leGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrVa 475625 : tagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGT : 475681 186 : uCysIlePheValIleValProAlaAlaLeuAlaValAspThrMetTyrValAlaCys : 204 ! |||.!!:!!.!!! ! !!.!! !:!!|||..!!!:.!!!!:!:!..! !!! lThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrp 475682 : AACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGG : 475738 205 : ThrGluHisCysLeuGlyLeuPheAlaIleIleLys : 216 !:!!||||||:!:...|||||| |||:::::! LeuGlnHisCysIleSerLeuPheGluIleValArg 475739 : TTGCAACATTGCATaagtttatttgaaattgttagG : 475776 vulgar: NvOr141 146 216 . KQ414815.1 475566 475776 + 113 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475567 475776 113 + . gene_id 3 ; sequence NvOr141 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475567 475776 . + . KQ414815.1 exonerate:protein2genome:local exon 475567 475776 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475567 475776 113 + . alignment_id 3 ; Query NvOr141 ; Align 475567 147 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr141 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 146 -> 215 Target range: 485722 -> 485929 147 : LeuLeuAspIleIleLeuProLeuAsnGluSerArgProSerMetPheIleLeuAsnG : 166 :!!|||||||||:!::!!||||||||| ! !!!|||||| !!! !.!! !:!!|||. IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 167 : lyGlnPheTyrValAspLysHisGluHisTyrLysLysLeuTyrAlaPheAspCysLe : 185 .!:!! !!:!||||||:!!!!.:!!:!!!:! ! :!! ||| !! ! !|| erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 186 : uCysIlePheValIleValProAlaAlaLeuAlaValAspThrMetTyrValAlaCys : 204 |! !:!!.!!:!! !!.! !!.! !|||::!...::: ::: :::||| uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 205 : ThrGluHisCysLeuGlyLeuPheAlaIleIle : 215 ! !:!!||| !! !||||||!:!.!!|||:!! IleGlnHisThrCysGlyLeuTyrThrIleVal 485895 : ATACAGCACACCTGTGGTTTGTATACAATCGTT : 485929 vulgar: NvOr141 146 215 . KQ414815.1 485722 485929 + 106 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485929 106 + . gene_id 4 ; sequence NvOr141 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485929 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485929 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485929 106 + . alignment_id 4 ; Query NvOr141 ; Align 485723 147 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr138INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 102 -> 187 Target range: 464585 -> 464840 103 : IleIleAlaAlaCysLeuAlaTyrIleLeuLeuProMetAlaProIleLeuLeuAspV : 122 .!!||| !!!.! ||| ! ! !|||||| !:!: !||| !:!!||||||| PheIleProValIleLeuPheIleCysLeuLeuGluValLeuProAspIleLeuAspV 464586 : TTCATTCCCGTTATACTGTTCATCTGTTTACTCGAAGTATTGCCAGATATTCTCGACG : 464643 123 : alPheValProLeuAsnGlnSerArgProArgPheTyrIleLeuGlyGlyGluTyrPh : 141 || !!!.!|||||||||:!!|||||| !!!.! |||:!!:!! !!.!|||!:!|| alValAlaProLeuAsnGluSerArgSerHisGlnTyrLeuIleThrAlaGluPhePh 464644 : TGGTTGCGCCCCTCAATGAATCTCGTTCTCATCAATACTTAATTACCGCGGAATTTTT : 464700 142 : eIleIleAspLysValGluAspTyrGlyLysValTyrMetPheAspValLeuAlaVal : 160 ||||! !|||!.. ! !:!!||| ! !..!! !:!: ! ! !:!!.!!:!! eIleThrAspSerSerProAsnTyrIleValThrCysValGlyThrAspIleThrLeu 464701 : CATCACTGATAGTTCGCCGAATTATATCGTAACTTGTGTTGGTACGGATATTACTCTT : 464757 161 : IleValSerValTrpLeuIleCysAlaValAspSerMetTyrAlaAlaSerIleGluH : 180 |||:!!.!!||| ! !||| !||| !!!:!!!.!. ! ! !! !:!::!!| IleMetGlyValThrThrIleIleAlaSerGluThrPheThrPheLeuLeuLeuGlnH 464758 : ATCATGGGAGTCACGACAATAATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGCAAC : 464817 181 : isCysLeuGlyLeuPheAlaIle : 187 || !! !!.!:!!||| !||| isIleCysAlaMetPheLysIle 464818 : ATATCTGCGCAATGTTCAAAATC : 464840 vulgar: NvOr138INT 102 187 . KQ414815.1 464585 464840 + 106 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464586 464840 106 + . gene_id 1 ; sequence NvOr138INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464586 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464586 464840 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464586 464840 106 + . alignment_id 1 ; Query NvOr138INT ; Align 464586 103 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr138INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 110 -> 189 Target range: 475542 -> 475776 111 : IleLeuLeuProMetAlaProIleLeuLeuAspValPheValProLeuAsnGlnSerA : 130 |||||||||! !.!.:!! !!! :!!|||||| !!!.:!!|||||||||:!!|||| IleLeuLeuLeuPheSerSerLysIleLeuAspSerLeuLeuProLeuAsnGluSerA 475543 : ATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTC : 475600 131 : rgProArgPheTyrIleLeuGlyGlyGluTyrPheIleIleAspLysValGluAspTy : 149 |||||!!!!::! !:!:::: |||||||||||| !!::!! ! ! !|| rgProSerTrpSerLeuIleArgIleGluTyrPheIleAsnGluGlnLysTyrPheTy 475601 : GTCCTAGCTGGTCTCTGAtacgaatagaatatttcataaacGAACAGAAATACTTTTA : 475657 150 : rGlyLysValTyrMetPheAspValLeuAlaValIleValSerValTrpLeuIleCys : 168 | !!..||| !!:!:!.!...!:!!.!!:!!:!!:!!! !! ! ! ! rLeuSerVal---IleTyrGlnThrValThrIleLeuLeuPheGlyThrThrTyrVal 475658 : TCTGAGCGTG---ATCTATCAGACTGTAACGATCCTTCTGTTTGGTACCACGTACGTA : 475711 169 : AlaValAspSerMetTyrAlaAlaSerIleGluHisCysLeuGlyLeuPheAlaIleV : 188 |||..!!!::!!!!:!:!.!! !!!!:!::!!||||||:!:...|||||| |||| AlaThrGluAlaIlePheThrMetTrpLeuGlnHisCysIleSerLeuPheGluIleV 475712 : GCAACTGAAGCAATATTTACCATGTGGTTGCAACATTGCATaagtttatttgaaattg : 475771 189 : alLys : 189 ||::! alArg 475772 : ttagG : 475776 vulgar: NvOr138INT 110 189 . KQ414815.1 475542 475776 + 102 M 42 126 G 1 0 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475543 475776 102 + . gene_id 2 ; sequence NvOr138INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475543 475776 . + . KQ414815.1 exonerate:protein2genome:local exon 475543 475776 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 475543 475776 102 + . alignment_id 2 ; Query NvOr138INT ; Align 475543 111 126 ; Align 475669 154 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr138INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 104 -> 189 Target range: 457165 -> 457417 105 : AlaAlaCysLeuAlaTyrIleLeuLeuProMetAlaProIleLeuLeuAspValPheV : 124 ..!!.!...|||!.! !! ! !|||! !:!: !|||||||||||||||:!! ! | CysGlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValV 457166 : TGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGG : 457223 125 : alProLeuAsnGlnSerArgProArgPheTyrIleLeuGlyGlyGluTyrPheIleIl : 143 |||||||||||:!!||||||||| !! ! !||| !!.!||||||||| :! alProLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPhe---Va 457224 : TCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTT---GT : 457277 144 : eAspLysValGluAspTyrGlyLysValTyrMetPheAspValLeuAlaValIleVal : 162 !|||! ! !:!! !! ! ! :!! ! ! ! !:!! !..!:!!:!::!! lAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIle 457278 : CGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATC : 457334 163 : SerValTrpLeuIleCysAlaValAspSerMetTyrAlaAlaSerIleGluHisCysL : 182 :!!!.! !:!! ||| !!!:|||:!: ! !.!!!:!:!! !||| !! AlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValC 457335 : GCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTT : 457394 183 : euGlyLeuPheAlaIleValLys : 189 !||||||||| !:!!..!!:! ysGlyLeuPheLysLeuThrArg 457395 : GTGGATTGTTCAAGCTTACTAGG : 457417 vulgar: NvOr138INT 104 189 . KQ414815.1 457165 457417 + 100 M 37 111 G 1 0 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457166 457417 100 + . gene_id 3 ; sequence NvOr138INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457166 457417 . + . KQ414815.1 exonerate:protein2genome:local exon 457166 457417 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457166 457417 100 + . alignment_id 3 ; Query NvOr138INT ; Align 457166 105 111 ; Align 457277 143 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr137 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 90 -> 218 Target range: 456822 -> 457417 91 : LeuArgValValTyrAspAsnIleAlaLysAsnTrpGlnValIleLysAspGluAsnG : 110 :!!|||! !:!!||||||||||||||| ! :!!|||:!! !:!:|||:!! !.!.| IleArgGluIleTyrAspAsnIleAlaAspAspTrpLysSerLeuLysAsnMetGluG 456823 : ATACGGGAGATTTACGACAATATCGCTGACGATTGGAAATCATTGAAGAACATGGAAG : 456880 111 : luIleAsnIleLeuIleGlnTyrSerGluAsnGlyArgLeuLeuThrIleGlyTyrTh : 129 |||||...|||::: :::|||::!.!...!|||||| !!!!|||:!!!.! .! luIleGluIleIleArgLysTyrAlaAsnGlyGlyArgArgPheThrLeuAlaIleAl 456881 : AAATCGagattattcgaaaatatgcGAACGGTGGCAGGAGATTTACACTTGCAATAGC : 456937 130 : r{M} >>>> Target Intron 1 >>>> {et}TyrIleIleAlaAlaPheCys : 137 !{!} 214 bp {!:}! !! ! !..!!.! a{I}++ ++{le}SerThrTyrCysGlyAlaLeu 456938 : A{A}gt.........................ag{TT}TCTACTTATTGTGGCGCACTG : 457175 138 : SerTyrValPheLeuProIleValProValLeuLeuAspValPheAsnProLeuAsnG : 157 ! !..! |||! !:!! !!|||:!!|||||||||:!! ! !|||||||||: ValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnG 457176 : GTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACG : 457235 158 : lnThrArgSerArgPheTyrIleLeuGlyGlyGluTyrPheIleIleAsnAsnValGl : 176 !!:!!||| !! !! ! !||| !!.!||||||||| :!!:!!! !:! luSerArgProCysGluLeuTyrLeuThrAlaGluTyrPhe---ValAspMetLysLy 457236 : AATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTT---GTCGACATGAAAAA : 457289 177 : uAspTyrGlyLysValTyrAlaPheAspCysLeuAlaValIleValThrValTrpLeu : 195 ! !! ! ! :!! !||| ! ! ! !..!:!!:!::!!.!!!.! ! sTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThr 457290 : GTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACG : 457346 196 : IleSerAlaValAspSerMetTyrAlaAlaSerIleGluHisCysLeuGlyLeuPheA : 215 :!!!!!||| !!!:|||:!: ! !.!!!:!:!! !||| !! !||||||||| LeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheL 457347 : TTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCA : 457406 216 : laIleValLys : 218 !:!!..!!:! ysLeuThrArg 457407 : AGCTTACTAGG : 457417 vulgar: NvOr137 90 218 . KQ414815.1 456822 457417 + 133 M 39 117 S 0 1 5 0 2 I 0 210 3 0 2 S 1 2 M 40 120 G 1 0 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 456823 457417 133 + . gene_id 1 ; sequence NvOr137 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 456823 456940 . + . KQ414815.1 exonerate:protein2genome:local exon 456823 456940 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 456941 456942 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 456941 457154 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457153 457154 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457155 457417 . + . KQ414815.1 exonerate:protein2genome:local exon 457155 457417 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 456823 457417 133 + . alignment_id 1 ; Query NvOr137 ; Align 456823 91 117 ; Align 457157 131 120 ; Align 457277 172 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr139 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 90 -> 218 Target range: 456822 -> 457417 91 : LeuLysValValTyrAspAsnIleAlaLysAsnTrpGlnAlaIleLysAspGluAsnG : 110 :!!::!! !:!!||||||||||||||| ! :!!|||:!!:!!:!:|||:!! !.!.| IleArgGluIleTyrAspAsnIleAlaAspAspTrpLysSerLeuLysAsnMetGluG 456823 : ATACGGGAGATTTACGACAATATCGCTGACGATTGGAAATCATTGAAGAACATGGAAG : 456880 111 : luValAsnIleLeuSerGlnTyrSerGluSerGlyTrpPheLeuThrIleSerTyrIl : 129 ||:!!...|||::: :::|||::!.!..!!||| !! !!!|||:!!:!! luIleGluIleIleArgLysTyrAlaAsnGlyGlyArgArgPheThrLeuAlaIleAl 456881 : AAATCGagattattcgaaaatatgcGAACGGTGGCAGGAGATTTACACTTGCAATAGC : 456937 130 : e{M} >>>> Target Intron 1 >>>> {et}TyrIleValIleAlaAlaSer : 137 !{!} 214 bp {!:}! !! ! ! !!.!||| ! a{I}++ ++{le}SerThrTyrCysGlyAlaLeu 456938 : A{A}gt.........................ag{TT}TCTACTTATTGTGGCGCACTG : 457175 138 : AlaTyrSerLeuLeuProMetAlaProValLeuLeuAspMetIleAspProLeuAsnG : 157 !.! !!!! !|||! !:!: !|||:!!|||||||||!!::!:! !|||||||||| ValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnG 457176 : GTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACG : 457235 158 : luThrArgProArgLeuTyrIleLeuGlyGlyGluTyrPheIleValAspAsnValGl : 176 ||:!!|||||| !! !! !||| !!.!||||||||| ||||||! !:! luSerArgProCysGluLeuTyrLeuThrAlaGluTyrPhe---ValAspMetLysLy 457236 : AATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTT---GTCGACATGAAAAA : 457289 177 : uAspTyrGlyLysValTyrAlaPheGluLeuValProAlaAlaValThrValTrpLeu : 195 ! !! ! ! :!! !||| ! :!!..! ! ! !:!!.!!!.! ! sTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThr 457290 : GTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACG : 457346 196 : IleCysAlaValAspSerMetTyrAlaAlaSerIleGluHisCysLeuGlyLeuLeuA : 215 :!! ||| !!!:|||:!: ! !.!!!:!:!! !||| !! !||||||!!! LeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheL 457347 : TTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCA : 457406 216 : laIleValLys : 218 !:!!..!!:! ysLeuThrArg 457407 : AGCTTACTAGG : 457417 vulgar: NvOr139 90 218 . KQ414815.1 456822 457417 + 139 M 39 117 S 0 1 5 0 2 I 0 210 3 0 2 S 1 2 M 40 120 G 1 0 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 456823 457417 139 + . gene_id 1 ; sequence NvOr139 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 456823 456940 . + . KQ414815.1 exonerate:protein2genome:local exon 456823 456940 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 456941 456942 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 456941 457154 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457153 457154 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457155 457417 . + . KQ414815.1 exonerate:protein2genome:local exon 457155 457417 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 456823 457417 139 + . alignment_id 1 ; Query NvOr139 ; Align 456823 91 117 ; Align 457157 131 120 ; Align 457277 172 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr142 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 156 Query range: 132 -> 216 Target range: 1243857 -> 1243605 133 : MetPhePheAlaLeuGlyLeuPheValThrMetProMetLeuProMetMetIleAs : 151 :!!|||!:! !! ! !:!!|||||| !.!.|||:!::!!||| !!::!:|| LeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleLeuAs 1243857 : TTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGA : 1243803 152 : pValIleSerProIleAsnGlySerArgProArgIlePheIleLeuAspGlyGluT : 170 ||||:!!||||||:!!|||! !!!!||| !!|||||| :::::: :::| pValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuGlnT 1243802 : TGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgcaat : 1243746 171 : yrIleAlaAspLysAsnGluAsnTyrGlyLysValTyrIlePheGluSerLeuThr : 188 ||:!: !|||! ...:::|||::: ...:::|||:!!!:! .!!! ! ! yrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCys 1243745 : accTGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGCTGGTGC : 1243692 189 : CysIleMetSerValPheValPheSerThrValAspSerThrTyrAlaValCysVa : 207 ! .!!|||!!!:!!.!.|||.!.! !|||:!!|||:!! !|||!.!||| !:! SerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValValIleIl 1243691 : TCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCAT : 1243635 208 : lGluGlnCysValGlyLeuMetAlaVal : 216 !.!.!!. !||||||.!.|||||| eHisHisThrCysGlyLeuPheAlaVal 1243634 : TCATCACACGTGTGGCTTATTCGCTGTT : 1243606 vulgar: NvOr142 132 216 . KQ414851.1 1243857 1243605 - 156 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243857 156 - . gene_id 1 ; sequence NvOr142 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243857 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243857 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243857 156 - . alignment_id 1 ; Query NvOr142 ; Align 1243858 133 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr142 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 335 -> 380 Target range: 1228545 -> 1228410 336 : TyrAsnAsnGluTrpTyrGluCysSerLysLysThrLysThrLeuLeuLysPheMe : 354 |||::!::! !||||||:!! ||| !||| !:!! !:!!:!! ! .!.|| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 355 : tMetLeuArgCysIleGluProCysGlnLeuThrAlaGlyGlyLeuTyrValMetA : 373 |...:!!|||..!:!!:!!|||||| |||||||||||||||||||||! !|||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 374 : snIleAlaAsnPheGlySerLeu : 380 ||!!:! !||||||!.!!:!:!! snMetGluAsnPheAlaAsnVal 1228433 : ACATGGAGAACTTTGCAAACGTT : 1228411 vulgar: NvOr142 335 380 . KQ414851.1 1228545 1228410 - 120 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1228545 120 - . gene_id 2 ; sequence NvOr142 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228411 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1228545 120 - . alignment_id 2 ; Query NvOr142 ; Align 1228546 336 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr142 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 330 -> 378 Target range: 1222520 -> 1222376 331 : IleLeuTyrAspAlaTyrAsnAsnGluTrpTyrGluCysSerLysLysThrLysTh : 349 |||! !! !|||::!||| !::!:!!||||||||| !! !||| !:!!! IleCysCysAspSerTyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLy 1222520 : ATTTGTTGCGACAGTTACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAA : 1222466 350 : rLeuLeuLysPheMetMetLeuArgCysIleGluProCysGlnLeuThrAlaGlyG : 368 !|||:!! ! |||...:!!|||! !|||..!|||||| !||||||||||||| sLeuIleTyrThrMetGlnMetArgSerIleArgProCysIleLeuThrAlaGlyG 1222465 : GTTGATTTACACGATGCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAG : 1222409 369 : lyLeuTyrValMetAsnIleAlaAsnPheGly : 378 ||:!!:!!! !|||||||||! !!:!|||||| lyValHisGluMetAsnIleGluSerPheGly 1222408 : GAGTGCATGAGATGAACATCGAGAGTTTCGGA : 1222377 vulgar: NvOr142 330 378 . KQ414851.1 1222520 1222376 - 120 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222377 1222520 120 - . gene_id 3 ; sequence NvOr142 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1222377 1222520 . - . KQ414851.1 exonerate:protein2genome:local exon 1222377 1222520 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222377 1222520 120 - . alignment_id 3 ; Query NvOr142 ; Align 1222521 331 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr142 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 335 -> 380 Target range: 1233381 -> 1233246 336 : TyrAsnAsnGluTrpTyrGluCysSerLysLysThrLysThrLeuLeuLysPheMe : 354 |||::!::! !||||||:!! !! !||| !:!! !:!!:!! ! || TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMe 1233381 : TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGAT : 1233327 355 : tMetLeuArgCysIleGluProCysGlnLeuThrAlaGlyGlyLeuTyrValMetA : 373 |...:!!|||..!:!!:!!|||||| |||||||||||||||||||||! !|||| tGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetA 1233326 : GCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGA : 1233270 374 : snIleAlaAsnPheGlySerLeu : 380 ||!!:! !||||||!.!!:!:!! snMetGluAsnPheAlaAsnVal 1233269 : ACATGGAGAACTTTGCAAACGTT : 1233247 vulgar: NvOr142 335 380 . KQ414851.1 1233381 1233246 - 114 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233247 1233381 114 - . gene_id 4 ; sequence NvOr142 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1233247 1233381 . - . KQ414851.1 exonerate:protein2genome:local exon 1233247 1233381 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233247 1233381 114 - . alignment_id 4 ; Query NvOr142 ; Align 1233382 336 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr132 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 130 -> 215 Target range: 1234320 -> 1234062 131 : MetMetThrAlaLeuIleValPheIleLeuLeuProMetTyrProIleMetThrAs : 149 :!::!!:!! !:!!:!!||||||:!:|||:!!|||:!: ! ! !.!. !|| LeuLeuSerPheMetValValPheLeuLeuValProLeuValPheProPheLeuAs 1234320 : TTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGA : 1234266 150 : pValIleValProLeuAspHisProArgAlaArgMetPheIleLeuAsnGlyAspT : 168 ||||:!!:!!||||||:!!.!. !!||| !!|||..! !!!!!..! !:!!| pValValLeuProLeuAsnGluThrArgProArgGlnGlnGlyPheArgValAsnT 1234265 : TGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACT : 1234209 169 : yrLeu<->ValAspArgAspGluTyrTyrPheGlnIleTyrValPheGluSerThr : 185 ||||| !!|||..!! !!:|||!:!|||...:!:||| !! !:!! ! yrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrp 1234208 : ATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGG : 1234155 186 : SerAlaAlaLeuThrValPheIleLeuCysSerThrAspProMetTyrAlaAlaIl : 204 .!!|||!.!:!!..!|||.!.|||:!! !!!!..!||| !!:!!||| ! !|| GlyAlaValValValValMetIleIleIleThrValAspSerLeuTyrMetIleIl 1234154 : GGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGATAAT : 1234098 205 : eValGluHisCysLeuGlyLeuPheCysIleCys : 215 |:!!.!.|||..! !|||:!!|||..!:!:||| eIleHisHisAlaSerGlyMetPheAlaValCys 1234097 : AATTCACCATGCCAGCGGAATGTTCGCCGTGTGC : 1234063 vulgar: NvOr132 130 215 . KQ414851.1 1234320 1234062 - 132 M 39 117 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234063 1234320 132 - . gene_id 1 ; sequence NvOr132 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234063 1234320 . - . KQ414851.1 exonerate:protein2genome:local exon 1234063 1234320 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234063 1234320 132 - . alignment_id 1 ; Query NvOr132 ; Align 1234321 131 117 ; Align 1234201 170 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr132 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 128 -> 214 Target range: 1240088 -> 1239827 129 : MetTyrMetMetThrAlaLeuIleValPheIleLeuLeuProMetTyrProIleMe : 147 :!: !:!:.!.:!:...|||...:::|||::::!!:!!|||::::::||| :: ValValLeuPheSerValLeuPheIlePheLeuValValProIlePheProProLe 1240088 : GTCGTTTTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcctcctct : 1240034 148 : tThrAspValIleValProLeuAspHisProArgAlaArgMetPheIleLeuAsnG : 166 : |||:!!:!! !||||||:!!.!. !!|||||||||... |||...... uLeuAspIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIlePheLysV 1240033 : tctggACATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatattcaaag : 1239977 167 : lyAspTyrLeu<->ValAspArgAspGluTyrTyrPheGlnIleTyrValPheGlu : 183 ::!|||||| :!!|||||||||||| ! !.!. ! !||| !! ! ! alAsnTyrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPheHisLeu 1239976 : ttaaTTACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTTCACTTG : 1239923 184 : SerThrSerAlaAlaLeuThrValPheIleLeuCysSerThrAspProMetTyrAl : 202 ||| !!!!.!! ! ! !! !.!. !:!! !|||:!!!!: !!!:|||!. SerTrpThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIleTyrVa 1239922 : TCTTGGACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGT : 1239866 203 : aAlaIleValGluHisCysLeuGlyLeuPheCysIle : 214 ! !:!!:!!.!.||| ! !|||||||||..!:!: lLeuLeuIleHisHisThrSerGlyLeuPheAlaVal 1239865 : CCTTCTTATTCATCATACCAGCGGTCTGTTTGCTGTG : 1239828 vulgar: NvOr132 128 214 . KQ414851.1 1240088 1239827 - 117 M 41 123 G 0 3 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239828 1240088 117 - . gene_id 2 ; sequence NvOr132 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239828 1240088 . - . KQ414851.1 exonerate:protein2genome:local exon 1239828 1240088 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239828 1240088 117 - . alignment_id 2 ; Query NvOr132 ; Align 1240089 129 123 ; Align 1239963 170 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr129 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 124 -> 215 Target range: 1234338 -> 1234065 125 : ValValTyrThrIlePheValLeuAlaAlaLeuGlyValPheValValValProLe : 143 ||| !!!:!:!! ! :!!|||:!! !:!!! !||||||:!!:!!|||||||| ValPhePheSerAspThrLeuLeuSerPheMetValValPheLeuLeuValProLe 1234338 : GTGTTCTTCTCAGATACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATT : 1234284 144 : uAlaProGlyIleLeuAspValIleLeuProLeuGluAsnGlyThrArgSerLysP : 162 |!.! ! !.!!|||||||||:!!|||||||||.!..!. ! !! ! !!:!! uValPheProPheLeuAspValValLeuProLeuAsnGluThrArgProArgGlnG 1234283 : AGTTTTTCCATTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGC : 1234227 163 : hePheIleLeuAsnGlyGluPheLeuValAspLysThrGluTyrPheIleGluIle : 180 .!! ! !..! ! .!.! ! !!|||:!!.!!!!:||||||.!!...:!: lnGlyPheArgValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSerVal 1234226 : AAGGATTCAGAGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTG : 1234173 181 : TyrAlaPheAspSerIleCysCysIleValThrValLeuIleIleCysAlaThrAs : 199 ||| ! :!! !!...:!!|||..!|||:!!|||||| !.!!..!|| TyrPheGlnLeuAlaTrpGlyAlaValValValValMetIleIleIleThrValAs 1234172 : TACTTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGA : 1234116 200 : pProLeuTyrAlaAlaIleLeuGluHisCysLeuAlaIlePheAlaIle : 215 | !!|||||| ! !|||:!!.!.|||..! !!.!!!:||||||:!: pSerLeuTyrMetIleIleIleHisHisAlaSerGlyMetPheAlaVal 1234115 : CTCGTTGTACATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTG : 1234066 vulgar: NvOr129 124 215 . KQ414851.1 1234338 1234065 - 116 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234066 1234338 116 - . gene_id 1 ; sequence NvOr129 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234066 1234338 . - . KQ414851.1 exonerate:protein2genome:local exon 1234066 1234338 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234066 1234338 116 - . alignment_id 1 ; Query NvOr129 ; Align 1234339 125 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr129 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 130 -> 215 Target range: 1229485 -> 1229230 131 : ValLeuAlaAlaLeuGlyValPheValValValProLeuAlaProGlyIleLeuAs : 149 :!!||| !|||:!! !!||||||:!!:!!||||||||| ! ! ! !||||| LeuLeuPheAlaMetCysValPheLeuLeuValProLeuPheGlyProAlaLeuAs 1229485 : TTACTCTTCGCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGA : 1229431 150 : pValIleLeuProLeuGluAsnGlyThrArgSerLysPhePheIleLeuAsnGlyG : 168 |:!!:!!||||||! !.!..!. !! !! ! !!:!! .!..!! ! !..! pIleValLeuProSerAsnGluThrArgProArgGlnGlnLeuPheArgValAsnT 1229430 : CATCGTCCTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACT : 1229374 169 : luPheLeuValAspLysThrGluTyrPheIleGluIleTyrAlaPheAspSerIle : 186 ! .!.:!! !!|||:!!.!!!!:||||||.!! ! :!:||| ! ! ! yrIleIlePheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPheTrp 1229373 : ATATAATTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTTTGG : 1229320 187 : CysCysIleValThrValLeuIleIleCysAlaThrAspProLeuTyrAlaAlaIl : 205 ||| |||||| !|||:!! !||| !.!!..!||| !!|||||| ! !|| CysThrIleValLeuValMetAlaIleIleThrValAspSerLeuTyrMetIleIl 1229319 : TGTACAATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGATCAT : 1229263 206 : eLeuGluHisCysLeuAlaIlePheAlaIle : 215 |:!! ! |||..! !!.!!!:||||||||| eIleTyrHisAlaSerGlyMetPheAlaIle 1229262 : AATTTACCATGCCAGCGGAATGTTCGCTATA : 1229231 vulgar: NvOr129 130 215 . KQ414851.1 1229485 1229230 - 116 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229231 1229485 116 - . gene_id 2 ; sequence NvOr129 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229231 1229485 . - . KQ414851.1 exonerate:protein2genome:local exon 1229231 1229485 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229231 1229485 116 - . alignment_id 2 ; Query NvOr129 ; Align 1229486 131 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr134 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 158 Query range: 135 -> 215 Target range: 1243842 -> 1243602 136 : IleLeuPheValMetLeuProLeuTyrProIleIleMetAspAlaThrIleProLe : 154 |||:!!||||||:!:!!!|||||| !||| !|||:!!|||!.!..! !||||| IleIlePheValLeuPheProLeuIleProProIleLeuAspValValSerProLe 1243842 : ATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCT : 1243788 155 : uAspLeuProArgProArgIleSerValLeuAsnGlyAspTyrLeuValAspGluA : 173 |:!! ! !!||| !!||||||...|||:::... ...|||||| !!||| . uAsnGluThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspMetG 1243787 : TAATGAGACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACAtgg : 1243731 174 : snAspTyrTyrPheGlnIleTyrValPheAspSerIleAlaCysThrLeuThrVal : 191 .. ::::::...:::||||||!:! !.!! ..!! !:!!|||:!! luLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMet 1243730 : agaagaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATG : 1243677 192 : PheIleMetCysSerThrAspProMetTyrAlaAlaIleValGluHisCysLeuGl : 210 .!.:!!!!: !!!!! !||| !!:!:|||!.!!.!|||:!!.!.||| ! !|| MetValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGl 1243676 : ATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGG : 1243620 211 : yLeuPheSerIleCys : 215 |||||||:!!:!!||| yLeuPheAlaValCys 1243619 : CTTATTCGCTGTTTGC : 1243603 vulgar: NvOr134 135 215 . KQ414851.1 1243842 1243602 - 158 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243603 1243842 158 - . gene_id 1 ; sequence NvOr134 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243603 1243842 . - . KQ414851.1 exonerate:protein2genome:local exon 1243603 1243842 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243603 1243842 158 - . alignment_id 1 ; Query NvOr134 ; Align 1243843 136 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr140 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 333 -> 378 Target range: 1228545 -> 1228410 334 : TyrSerAsnGluTrpTyrGluThrSerIleArgSerGlnAsnLeuLeuLysPheMe : 352 ||||||::! !||||||:!!..!||| !!:!! !|||...:!!:!! ! .!.|| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 353 : tArgLeuArgCysLeuThrProCysGlnLeuThrAlaGlyGlyIleTyrValMetA : 371 |!:!:!!|||..!|||! !|||||| |||||||||||||||:!:|||! !|||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 372 : snPheAlaAsnPheAlaSerIle : 378 ||.!.! !|||||||||!:!:!! snMetGluAsnPheAlaAsnVal 1228433 : ACATGGAGAACTTTGCAAACGTT : 1228411 vulgar: NvOr140 333 378 . KQ414851.1 1228545 1228410 - 130 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1228545 130 - . gene_id 1 ; sequence NvOr140 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228411 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1228545 130 - . alignment_id 1 ; Query NvOr140 ; Align 1228546 334 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr140 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 129 Query range: 135 -> 215 Target range: 1243842 -> 1243605 136 : LeuPhePheIleIleLeuProIleThrProMetValLeuAsnValIleLysProLe : 154 :!!.!.|||:!!:!!!!!|||:!!! !||| :!!|||:!!|||:!!..!||||| IleIlePheValLeuPheProLeuIleProProIleLeuAspValValSerProLe 1243842 : ATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCT : 1243788 155 : uAsnGluSerArgProTrpAspPheIleMetHisGlyGluPheProValAsnAspM : 173 |||||||!!!||| !! !! :::::: :::::: :!! !|||| uAsnGluThrArgSerArgIleGluValIleLysLeuGlnTyr---LeuPheAspM 1243787 : TAATGAGACTCGATCTCGGATAGaagtaataaaattgcaatac---cTGTTCGACA : 1243734 174 : etHisAlaHisTyrGlyGluIleTyrLeuPheAspSerLeuAlaCysIleAlaThr : 191 ||... :::::: ...:::|||:!!!:! !.!!! !..!! .!! !||| etGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThr 1243733 : tggagaagaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACC : 1243680 192 : ValLeuValPheCysThrValAspSerMetTyrAlaThrCysIleGluHisCysIl : 210 :!!:!!|||.!. !|||:!!|||:!!:!:|||!.!..! !|||.!.||| MetMetValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCy 1243679 : ATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTG : 1243623 211 : eGlyLeuPheAlaIle : 215 !||||||||||||:!! sGlyLeuPheAlaVal 1243622 : TGGCTTATTCGCTGTT : 1243606 vulgar: NvOr140 135 215 . KQ414851.1 1243842 1243605 - 129 M 33 99 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243842 129 - . gene_id 2 ; sequence NvOr140 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243842 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243842 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243842 129 - . alignment_id 2 ; Query NvOr140 ; Align 1243843 136 99 ; Align 1243744 170 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr140 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 333 -> 378 Target range: 1233381 -> 1233246 334 : TyrSerAsnGluTrpTyrGluThrSerIleArgSerGlnAsnLeuLeuLysPheMe : 352 ||||||::! !||||||:!!..! !! !!:!! !|||...:!!:!! ! || TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMe 1233381 : TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGAT : 1233327 353 : tArgLeuArgCysLeuThrProCysGlnLeuThrAlaGlyGlyIleTyrValMetA : 371 |!:!:!!|||..!|||! !|||||| |||||||||||||||:!:|||! !|||| tGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetA 1233326 : GCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGA : 1233270 372 : snPheAlaAsnPheAlaSerIle : 378 ||.!.! !|||||||||!:!:!! snMetGluAsnPheAlaAsnVal 1233269 : ACATGGAGAACTTTGCAAACGTT : 1233247 vulgar: NvOr140 333 378 . KQ414851.1 1233381 1233246 - 124 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233247 1233381 124 - . gene_id 3 ; sequence NvOr140 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1233247 1233381 . - . KQ414851.1 exonerate:protein2genome:local exon 1233247 1233381 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233247 1233381 124 - . alignment_id 3 ; Query NvOr140 ; Align 1233382 334 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr140 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 331 -> 378 Target range: 1222511 -> 1222370 332 : AspAlaTyrSerAsnGluTrpTyrGluThrSerIleArgSerGlnAsnLeuLeuLy : 350 |||::!|||:!!::!:!!||||||||| ! !!:!!!:!.!!|||!!.|||:!! ! AspSerTyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTy 1222511 : GACAGTTACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTA : 1222457 351 : sPheMetArgLeuArgCysLeuThrProCysGlnLeuThrAlaGlyGlyIleTyrV : 369 |||!:!:!!|||! !:!! !|||||| !|||||||||||||||:!::!!! rThrMetGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisG 1222456 : CACGATGCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATG : 1222400 370 : alMetAsnPheAlaAsnPheAlaSerIle : 378 !||||||.!!! !!:!|||!.!! !:!! luMetAsnIleGluSerPheGlyIleVal 1222399 : AGATGAACATCGAGAGTTTCGGAATAGTA : 1222371 vulgar: NvOr140 331 378 . KQ414851.1 1222511 1222370 - 122 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222371 1222511 122 - . gene_id 4 ; sequence NvOr140 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1222371 1222511 . - . KQ414851.1 exonerate:protein2genome:local exon 1222371 1222511 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222371 1222511 122 - . alignment_id 4 ; Query NvOr140 ; Align 1222512 332 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr140 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 130 -> 215 Target range: 1234320 -> 1234065 131 : MetThrSerAlaLeuLeuPhePheIleIleLeuProIleThrProMetValLeuAs : 149 :!: !||| !:!!:!! !!|||:!::!::!!|||:!!..! ! !!|||:! LeuLeuSerPheMetValValPheLeuLeuValProLeuValPheProPheLeuAs 1234320 : TTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGA : 1234266 150 : nValIleLysProLeuAsnGluSerArgProTrpAspPheIleMetHisGlyGluP : 168 !|||:!! ||||||||||||!!!|||||| ! .!. !.!....! !.!.! pValValLeuProLeuAsnGluThrArgProArgGlnGlnGlyPheArgValAsnT 1234265 : TGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACT : 1234209 169 : heProValAsnAspMetHisAlaHisTyrGlyGluIleTyrLeuPheAspSerLeu : 186 :!! ! ! !||| ! !:!!!:! !...:!:|||!!! :!!! ! yrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrp 1234208 : ATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGG : 1234155 187 : AlaCysIleAlaThrValLeuValPheCysThrValAspSerMetTyrAlaThrCy : 205 !.!...:!!!.!..!|||:!!:!!.!. !||||||||||||:!!||| !! ! GlyAlaValValValValMetIleIleIleThrValAspSerLeuTyrMetIleIl 1234154 : GGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGATAAT : 1234098 206 : sIleGluHisCysIleGlyLeuPheAlaIle : 215 |||.!.|||..!! !|||:!!||||||:!: eIleHisHisAlaSerGlyMetPheAlaVal 1234097 : AATTCACCATGCCAGCGGAATGTTCGCCGTG : 1234066 vulgar: NvOr140 130 215 . KQ414851.1 1234320 1234065 - 117 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234066 1234320 117 - . gene_id 5 ; sequence NvOr140 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234066 1234320 . - . KQ414851.1 exonerate:protein2genome:local exon 1234066 1234320 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234066 1234320 117 - . alignment_id 5 ; Query NvOr140 ; Align 1234321 131 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr140 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 133 -> 215 Target range: 1229476 -> 1229230 134 : AlaLeuLeuPhePheIleIleLeuProIleThrProMetValLeuAsnValIleLy : 152 |||:!!! ! !!|||:!::!::!!|||:!: ! ! !.!|||:!!:!!:!! AlaMetCysValPheLeuLeuValProLeuPheGlyProAlaLeuAspIleValLe 1229476 : GCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCGTCCT : 1229422 153 : sProLeuAsnGluSerArgProTrpAspPheIleMetHisGlyGluPheProValA : 171 |||! !||||||!!!|||||| !!.!. :!:.!....! !.!.!:! !:!! uProSerAsnGluThrArgProArgGlnGlnLeuPheArgValAsnTyrIleIleP 1229421 : TCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAATTT : 1229365 172 : snAspMetHisAlaHisTyrGlyGluIleTyrLeuPheAspSerLeuAlaCysIle : 189 !|||... ! !:!!!:! ! ! :!:|||:!! ! !! !..! ||| heAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPheTrpCysThrIle 1229364 : TCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACAATC : 1229311 190 : AlaThrValLeuValPheCysThrValAspSerMetTyrAlaThrCysIleGluHi : 208 !.! !|||:!!!.!.!! !||||||||||||:!!||| !! ! ||| ! || ValLeuValMetAlaIleIleThrValAspSerLeuTyrMetIleIleIleTyrHi 1229310 : GTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGATCATAATTTACCA : 1229254 209 : sCysIleGlyLeuPheAlaIle : 215 |..!! !|||:!!||||||||| sAlaSerGlyMetPheAlaIle 1229253 : TGCCAGCGGAATGTTCGCTATA : 1229231 vulgar: NvOr140 133 215 . KQ414851.1 1229476 1229230 - 114 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229231 1229476 114 - . gene_id 6 ; sequence NvOr140 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229231 1229476 . - . KQ414851.1 exonerate:protein2genome:local exon 1229231 1229476 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229231 1229476 114 - . alignment_id 6 ; Query NvOr140 ; Align 1229477 134 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr140 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 133 -> 215 Target range: 1224276 -> 1224030 134 : AlaLeuLeuPhePheIleIleLeuProIleThrProMetValLeuAsnValIleLy : 152 !.!|||||| ! !:!!!:! !!!!|||:!:! ! ! !||||||:!!|||:!! ValLeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAspValValAl 1224276 : GTTCTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGC : 1224222 153 : sProLeuAsnGluSerArgProTrpAspPheIleMetHisGlyGluPheProValA : 171 !||||||||||||!!!|||||| ! .!!:!::!:! ! !...!:! ! !!! aProLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheI 1224221 : GCCGTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCA : 1224165 172 : snAspMetHisAlaHisTyrGlyGluIleTyrLeuPheAspSerLeuAlaCysIle : 189 ||| !:!!! !|||!:! !...:!: !!!!! ! ! ! !::! ||| leAspGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIle 1224164 : TAGACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATT : 1224111 190 : AlaThrValLeuValPheCysThrValAspSerMetTyrAlaThrCysIleGluHi : 208 :!! !! !:!!:!!.!. !.!!||||||! !:!:||| !||| !||| || SerCysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHi 1224110 : TCCTGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCA : 1224054 209 : sCysIleGlyLeuPheAlaIle : 215 | ! !||||||||||||:!: sLeuCysGlyLeuPheAlaVal 1224053 : CCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: NvOr140 133 215 . KQ414851.1 1224276 1224030 - 113 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224276 113 - . gene_id 7 ; sequence NvOr140 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224276 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224276 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224276 113 - . alignment_id 7 ; Query NvOr140 ; Align 1224277 134 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr140 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 128 -> 215 Target range: 1240088 -> 1239827 129 : MetTyrMetThrSerAlaLeuLeuPhePheIleIleLeuProIleThrProMetVa : 147 :!: !:!: !|||...|||......|||::::!::!!|||||| ||| :: ValValLeuPheSerValLeuPheIlePheLeuValValProIlePheProProLe 1240088 : GTCGTTTTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcctcctct : 1240034 148 : lLeuAsnValIleLysProLeuAsnGluSerArgProTrpAspPheIleMetHisG : 166 :|||:!!:!!:!!|||||||||||||||!!!||| !! ... |||... uLeuAspIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIlePheLysV 1240033 : tctggACATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatattcaaag : 1239977 167 : lyGluPheProValAsnAspMetHisAlaHisTyrGlyGluIleTyrLeuPheAsp : 184 ...!:!! !:!!! !|||! ! !!! !!!. ! ! ! !|||!!! ! alAsnTyrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPheHisLeu 1239976 : ttaaTTACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTTCACTTG : 1239923 185 : SerLeuAlaCysIleAlaThrValLeuValPheCysThrValAspSerMetTyrAl : 203 |||! !.!! !|||.!! !! !:!! ! ! !!:! !!!:! !!!:|||!. SerTrpThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIleTyrVa 1239922 : TCTTGGACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGT : 1239866 204 : aThrCysIleGluHisCysIleGlyLeuPheAlaIle : 215 ! ! !|||.!.||| !! !||||||||||||:!: lLeuLeuIleHisHisThrSerGlyLeuPheAlaVal 1239865 : CCTTCTTATTCATCATACCAGCGGTCTGTTTGCTGTG : 1239828 vulgar: NvOr140 128 215 . KQ414851.1 1240088 1239827 - 102 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239828 1240088 102 - . gene_id 8 ; sequence NvOr140 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239828 1240088 . - . KQ414851.1 exonerate:protein2genome:local exon 1239828 1240088 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239828 1240088 102 - . alignment_id 8 ; Query NvOr140 ; Align 1240089 129 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr133 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 142 Query range: 136 -> 215 Target range: 1243839 -> 1243602 137 : ValTyrValMetLeuProMetCysProIleIleMetAspAlaAlaLysProLeuAs : 155 :!!!:!|||:!:!!!|||:!: !||| !|||:!!|||!.!!.!..!||||||:! IlePheValLeuPheProLeuIleProProIleLeuAspValValSerProLeuAs 1243839 : ATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAA : 1243785 156 : pHisProArgTyrArgMetPheIleLeuAsnGlyAspTyrLeuValAspGluTyrA : 174 !.!. !!|||! !|||!!: ::::::... ...|||||| !!||| nGluThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspMetGluL 1243784 : TGAGACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACAtggaga : 1243728 175 : spTyrTyrPheTyrIleTyrAlaPheAspSerMetAlaAlaIleValThrValAla : 192 :::::: :::|||!.!!:! !.!! !..!:!!.!!:!!|||:!! ! ysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMet 1243727 : agaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATG : 1243674 193 : IleMetCysAlaThrAspProMetTyrAlaAlaIleValGluHisCysLeuGlyLe : 211 :!!!!: !.!!! !||| !!:!:|||!.!!.!|||:!!.!.||| ! !||||| ValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGlyLe 1243673 : GTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTT : 1243617 212 : uPheSerIleCys : 215 ||||:!!:!!||| uPheAlaValCys 1243616 : ATTCGCTGTTTGC : 1243603 vulgar: NvOr133 136 215 . KQ414851.1 1243839 1243602 - 142 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243603 1243839 142 - . gene_id 1 ; sequence NvOr133 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243603 1243839 . - . KQ414851.1 exonerate:protein2genome:local exon 1243603 1243839 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243603 1243839 142 - . alignment_id 1 ; Query NvOr133 ; Align 1243840 137 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr133 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 133 -> 215 Target range: 1224276 -> 1224027 134 : AlaValThrValTyrValMetLeuProMetCysProIleIleMetAspAlaAlaLy : 152 !.!:!! !||||||:!!! !!!|||:!! ! :!!:!!|||!.!!.! ValLeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAspValValAl 1224276 : GTTCTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGC : 1224222 153 : sProLeuAspHisProArgTyrArgMetPheIleLeuAsnGlyAspTyrLeu<->V : 170 !||||||:!!.!. !!||| !|||! !.!!:!:||| ! !..!|||:!! : aProLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheI 1224221 : GCCGTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCA : 1224165 171 : alAspGluTyrAspTyrTyrPheTyrIleTyrAlaPheAspSerMetAlaAlaIle : 188 !!|||||||||!!::!!!:!!:! !:!: !! ! ! ! !! ::!!.!||| leAspGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIle 1224164 : TAGACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATT : 1224111 189 : ValThrValAlaIleMetCysAlaThrAspProMetTyrAlaAlaIleValGluHi : 207 ! !! ! !!!:!!: !|||..!||| !:!:||| !.!!|||:!! || SerCysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHi 1224110 : TCCTGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCA : 1224054 208 : sCysLeuGlyLeuPheSerIleCys : 215 | !! !|||||||||:!!:!:||| sLeuCysGlyLeuPheAlaValCys 1224053 : CCTTTGCGGATTGTTCGCAGTGTGT : 1224028 vulgar: NvOr133 133 215 . KQ414851.1 1224276 1224027 - 107 M 36 108 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224028 1224276 107 - . gene_id 2 ; sequence NvOr133 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224028 1224276 . - . KQ414851.1 exonerate:protein2genome:local exon 1224028 1224276 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224028 1224276 107 - . alignment_id 2 ; Query NvOr133 ; Align 1224277 134 108 ; Align 1224166 170 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr130 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 136 -> 215 Target range: 1243839 -> 1243602 137 : ValSerValValLeuProMetCysProIleValLeuAspSerThrAspProLeuAs : 155 :!!! !|||:!!!!!|||:!: !||| !:!!|||||| !..!...||||||:! IlePheValLeuPheProLeuIleProProIleLeuAspValValSerProLeuAs 1243839 : ATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAA : 1243785 156 : pGlnProArgProArgMetPheIleLeuAsnGlyGluTyrIleValAspLysTyrG : 174 !:!! !!||| !!|||!!: ::::::... :::|||:!: !!|||! : nGluThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspMetGluL 1243784 : TGAGACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACAtggaga : 1243728 175 : luTyrTyrPheGlnIleTyrThrLeuAspIleIleSerValPheLeuMetIleCys : 192 :: ::::::...:::|||..!! ! ! ! !!! !|||:!!! !!: ysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMet 1243727 : agaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATG : 1243674 193 : IleLeuCysAlaThrAspProMetTyrAlaAlaIleValGluHisCysLeuGlyLe : 211 :!!:!! !.!!! !||| !!:!:|||!.!!.!|||:!!.!.||| ! !||||| ValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGlyLe 1243673 : GTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTT : 1243617 212 : uPheSerIleCys : 215 ||||:!!:!!||| uPheAlaValCys 1243616 : ATTCGCTGTTTGC : 1243603 vulgar: NvOr130 136 215 . KQ414851.1 1243839 1243602 - 131 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243603 1243839 131 - . gene_id 1 ; sequence NvOr130 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243603 1243839 . - . KQ414851.1 exonerate:protein2genome:local exon 1243603 1243839 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243603 1243839 131 - . alignment_id 1 ; Query NvOr130 ; Align 1243840 137 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr130 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 133 -> 215 Target range: 1224276 -> 1224027 134 : AlaValAlaValSerValValLeuProMetCysProIleValLeuAspSerThrAs : 152 !.!:!! !|||! !:!! !!!!|||:!! ! ||||||||| !..!! ValLeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAspValValAl 1224276 : GTTCTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGC : 1224222 153 : pProLeuAspGlnProArgProArgMetPheIleLeuAsnGlyGluTyrIle<->V : 170 ||||||:!!:!! !!|||||||||! !.!!:!:||| ! !...|||||| : aProLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheI 1224221 : GCCGTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCA : 1224165 171 : alAspLysTyrGluTyrTyrPheGlnIleTyrThrLeuAspIleIleSerValPhe : 188 !!|||:!!||||||:!!!:!!:!...:!: !! !! ! !! !||||||.!! leAspGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIle 1224164 : TAGACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATT : 1224111 189 : LeuMetIleCysIleLeuCysAlaThrAspProMetTyrAlaAlaIleValGluHi : 207 ! ! !!::!! !|||..!||| !:!:||| !.!!|||:!! || SerCysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHi 1224110 : TCCTGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCA : 1224054 208 : sCysLeuGlyLeuPheSerIleCys : 215 | !! !|||||||||:!!:!:||| sLeuCysGlyLeuPheAlaValCys 1224053 : CCTTTGCGGATTGTTCGCAGTGTGT : 1224028 vulgar: NvOr130 133 215 . KQ414851.1 1224276 1224027 - 114 M 36 108 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224028 1224276 114 - . gene_id 2 ; sequence NvOr130 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224028 1224276 . - . KQ414851.1 exonerate:protein2genome:local exon 1224028 1224276 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224028 1224276 114 - . alignment_id 2 ; Query NvOr130 ; Align 1224277 134 108 ; Align 1224166 170 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr138INT Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 301 -> 346 Target range: 1233381 -> 1233246 302 : TyrLeuAsnGluTrpTyrAlaCysProThrArgAlaGlnLysLeuLeuGlyLeuMe : 320 |||! !::! !|||||| ! |||.!!!:! !|||::!:!!:!! ! !|| TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMe 1233381 : TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGAT : 1233327 321 : tThrLeuArgCysSerLysProCysHisLeuThrAlaGlyGlyMetTyrValMetA : 339 | !:!!|||..! !||||||||| !|||||||||||||||:!!|||! !|||| tGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetA 1233326 : GCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGA : 1233270 340 : snLeuSerAsnPheAlaLysIle : 346 ||:!!..!|||||||||!!.:!! snMetGluAsnPheAlaAsnVal 1233269 : ACATGGAGAACTTTGCAAACGTT : 1233247 vulgar: NvOr138INT 301 346 . KQ414851.1 1233381 1233246 - 125 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233247 1233381 125 - . gene_id 1 ; sequence NvOr138INT ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1233247 1233381 . - . KQ414851.1 exonerate:protein2genome:local exon 1233247 1233381 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233247 1233381 125 - . alignment_id 1 ; Query NvOr138INT ; Align 1233382 302 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr138INT Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 299 -> 352 Target range: 1222511 -> 1222352 300 : AspThrTyrLeuAsnGluTrpTyrAlaCysProThrArgAlaGlnLysLeuLeuGl : 318 |||!:!||| !::!:!!||||||! ! |||..!!:!!.!|||||||||:!! AspSerTyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTy 1222511 : GACAGTTACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTA : 1222457 319 : yLeuMetThrLeuArgCysSerLysProCysHisLeuThrAlaGlyGlyMetTyrV : 337 ! !||| !:!!|||! !! !::!|||||| |||||||||||||||:!!:!!! rThrMetGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisG 1222456 : CACGATGCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATG : 1222400 338 : alMetAsnLeuSerAsnPheAlaLysIleValLysThrSerLeuSer : 352 !||||||:!!..!!:!|||!.!! !:!! !!!.!.!! !:!!!:! luMetAsnIleGluSerPheGlyIleValCysAsnAsnMetIleAsn 1222399 : AGATGAACATCGAGAGTTTCGGAATAGTATGTAATAATATGATAAAT : 1222353 vulgar: NvOr138INT 299 352 . KQ414851.1 1222511 1222352 - 122 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222353 1222511 122 - . gene_id 2 ; sequence NvOr138INT ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1222353 1222511 . - . KQ414851.1 exonerate:protein2genome:local exon 1222353 1222511 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222353 1222511 122 - . alignment_id 2 ; Query NvOr138INT ; Align 1222512 300 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr138INT Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 301 -> 346 Target range: 1228545 -> 1228410 302 : TyrLeuAsnGluTrpTyrAlaCysProThrArgAlaGlnLysLeuLeuGlyLeuMe : 320 |||! !::! !|||||| ! !!.!!!:! !|||::!:!!:!! !:!!|| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 321 : tThrLeuArgCysSerLysProCysHisLeuThrAlaGlyGlyMetTyrValMetA : 339 | !:!!|||..! !||||||||| !|||||||||||||||:!!|||! !|||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 340 : snLeuSerAsnPheAlaLysIle : 346 ||:!!..!|||||||||!!.:!! snMetGluAsnPheAlaAsnVal 1228433 : ACATGGAGAACTTTGCAAACGTT : 1228411 vulgar: NvOr138INT 301 346 . KQ414851.1 1228545 1228410 - 120 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1228545 120 - . gene_id 3 ; sequence NvOr138INT ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228411 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1228545 120 - . alignment_id 3 ; Query NvOr138INT ; Align 1228546 302 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr137 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 129 Query range: 138 -> 216 Target range: 1243836 -> 1243605 139 : TyrValPheLeuProIleValProValLeuLeuAspValPheAsnProLeuAsnGl : 157 !:!|||!!.!!!|||:!!:!!||| !:!!||||||||| !!:::|||||||||:! PheValLeuPheProLeuIleProProIleLeuAspValValSerProLeuAsnGl 1243836 : TTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGA : 1243782 158 : nThrArgSerArgPheTyrIleLeuGlyGlyGluTyrPheIleIleAsnAsnValG : 176 !||||||||||||.!. :::::: :::||| :!:.!!:!!! : uThrArgSerArgIleGluValIleLysLeuGlnTyr---LeuPheAspMetGluL 1243781 : GACTCGATCTCGGATAGaagtaataaaattgcaatac---cTGTTCGACAtggaga : 1243728 177 : luAspTyrGlyLysValTyrAlaPheAspCysLeuAlaValIleValThrValTrp : 194 :::::::: ...:::|||!.!!:! ! !!! !..! !.!!:!!|||:!! ! ysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMet 1243727 : agaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATG : 1243674 195 : LeuIleSerAlaValAspSerMetTyrAlaAlaSerIleGluHisCysLeuGlyLe : 213 :!!|||! !.!!:!!|||:!!:!:|||!.!!.!! !|||.!.||| ! !||||| ValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGlyLe 1243673 : GTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTT : 1243617 214 : uPheAlaIle : 216 |||||||:!! uPheAlaVal 1243616 : ATTCGCTGTT : 1243606 vulgar: NvOr137 138 216 . KQ414851.1 1243836 1243605 - 129 M 31 93 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243836 129 - . gene_id 1 ; sequence NvOr137 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243836 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243836 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243836 129 - . alignment_id 1 ; Query NvOr137 ; Align 1243837 139 93 ; Align 1243744 171 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr137 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 328 -> 373 Target range: 1233381 -> 1233246 329 : TyrLeuAsnGluTrpTyrThrCysProThrArgAlaGlnLysLeuLeuGlyLeuMe : 347 |||! !::! !||||||! ! |||.!!!:! !|||::!:!!:!! ! !|| TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMe 1233381 : TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGAT : 1233327 348 : tThrLeuArgCysSerLysProCysGlnLeuThrAlaGlyGlyMetTyrValMetA : 366 | !:!!|||..! !||||||||| |||||||||||||||:!!|||! !|||| tGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetA 1233326 : GCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGA : 1233270 367 : snPheSerAsnPheAlaLysIle : 373 ||.!...!|||||||||!!.:!! snMetGluAsnPheAlaAsnVal 1233269 : ACATGGAGAACTTTGCAAACGTT : 1233247 vulgar: NvOr137 328 373 . KQ414851.1 1233381 1233246 - 124 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233247 1233381 124 - . gene_id 2 ; sequence NvOr137 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1233247 1233381 . - . KQ414851.1 exonerate:protein2genome:local exon 1233247 1233381 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233247 1233381 124 - . alignment_id 2 ; Query NvOr137 ; Align 1233382 329 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr137 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 326 -> 370 Target range: 1222511 -> 1222379 327 : AspAlaTyrLeuAsnGluTrpTyrThrCysProThrArgAlaGlnLysLeuLeuGl : 345 |||::!||| !::!:!!|||||| ! |||..!!:!!.!|||||||||:!! AspSerTyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTy 1222511 : GACAGTTACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTA : 1222457 346 : yLeuMetThrLeuArgCysSerLysProCysGlnLeuThrAlaGlyGlyMetTyrV : 364 ! !||| !:!!|||! !! !::!|||||| !|||||||||||||||:!!:!!! rThrMetGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisG 1222456 : CACGATGCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATG : 1222400 365 : alMetAsnPheSerAsnPhe : 370 !||||||.!!..!!:!||| luMetAsnIleGluSerPhe 1222399 : AGATGAACATCGAGAGTTTC : 1222380 vulgar: NvOr137 326 370 . KQ414851.1 1222511 1222379 - 119 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222380 1222511 119 - . gene_id 3 ; sequence NvOr137 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1222380 1222511 . - . KQ414851.1 exonerate:protein2genome:local exon 1222380 1222511 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222380 1222511 119 - . alignment_id 3 ; Query NvOr137 ; Align 1222512 327 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr137 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 328 -> 373 Target range: 1228545 -> 1228410 329 : TyrLeuAsnGluTrpTyrThrCysProThrArgAlaGlnLysLeuLeuGlyLeuMe : 347 |||! !::! !||||||! ! !!.!!!:! !|||::!:!!:!! !:!!|| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 348 : tThrLeuArgCysSerLysProCysGlnLeuThrAlaGlyGlyMetTyrValMetA : 366 | !:!!|||..! !||||||||| |||||||||||||||:!!|||! !|||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 367 : snPheSerAsnPheAlaLysIle : 373 ||.!...!|||||||||!!.:!! snMetGluAsnPheAlaAsnVal 1228433 : ACATGGAGAACTTTGCAAACGTT : 1228411 vulgar: NvOr137 328 373 . KQ414851.1 1228545 1228410 - 118 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1228545 118 - . gene_id 4 ; sequence NvOr137 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228411 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1228545 118 - . alignment_id 4 ; Query NvOr137 ; Align 1228546 329 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr137 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 138 -> 216 Target range: 1224264 -> 1224030 139 : TyrValPheLeuProIleValProValLeuLeuAspValPheAsnProLeuAsnGl : 157 |||:!! !!!!|||:!::!! ! !:!!||||||||| !! |||||||||:! TyrMetSerPheProLeuIleAsnProValLeuAspValValAlaProLeuAsnGl 1224264 : TATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGA : 1224210 158 : nThrArgSerArgPheTyrIleLeuGlyGlyGluTyrPheIleIleAsnAsnValG : 176 !|||||| !!||| !:!:||| !! !...|||.!..!!|||:!!.!. !| uThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleAspGluTyrG 1224209 : GACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACG : 1224153 177 : luAspTyrGlyLysValTyrAlaPheAspCysLeuAlaValIleValThrValTrp : 194 || !!!:! !!..||| !! ! ! ! ! !::!|||||| ! !! ! ! luHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSerCysGlyMet 1224152 : AGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATG : 1224099 195 : LeuIleSerAlaValAspSerMetTyrAlaAlaSerIleGluHisCysLeuGlyLe : 213 :!!|||! !|||||||||! !:!:||| !.!!! !||| ||| !! !||||| MetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCysGlyLe 1224098 : ATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTGCGGATT : 1224042 214 : uPheAlaIle : 216 |||||||:!: uPheAlaVal 1224041 : GTTCGCAGTG : 1224031 vulgar: NvOr137 138 216 . KQ414851.1 1224264 1224030 - 118 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224264 118 - . gene_id 5 ; sequence NvOr137 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224264 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224264 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224264 118 - . alignment_id 5 ; Query NvOr137 ; Align 1224265 139 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr137 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 131 -> 216 Target range: 1234320 -> 1234065 132 : IleIleAlaAlaPheCysSerTyrValPheLeuProIleValProValLeuLeuAs : 150 :!!:!::!! !.!. !!:!:!!.!.:!!|||:!!||| ! !!!!||||| LeuLeuSerPheMetValValPheLeuLeuValProLeuValPheProPheLeuAs 1234320 : TTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGA : 1234266 151 : pValPheAsnProLeuAsnGlnThrArgSerArgPheTyrIleLeuGlyGlyGluT : 169 |||| !! !|||||||||:!!|||||| !!||| ! !!!! !!! !.!.| pValValLeuProLeuAsnGluThrArgProArgGlnGlnGlyPheArgValAsnT 1234265 : TGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACT : 1234209 170 : yrPheIleIleAsnAsnValGluAspTyrGlyLysValTyrAlaPheAspCysLeu : 187 ||.!. !.!!:!!.!.!.!!!: !!!:! !!..|||||| ! ..!! ! yrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrp 1234208 : ATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGG : 1234155 188 : AlaValIleValThrValTrpLeuIleSerAlaValAspSerMetTyrAlaAlaSe : 206 !.!!.!:!!|||..!||| !:!!|||! !.!!|||||||||:!!||| ! !! GlyAlaValValValValMetIleIleIleThrValAspSerLeuTyrMetIleIl 1234154 : GGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGATAAT : 1234098 207 : rIleGluHisCysLeuGlyLeuPheAlaIle : 216 !|||.!.|||..! !|||:!!||||||:!: eIleHisHisAlaSerGlyMetPheAlaVal 1234097 : AATTCACCATGCCAGCGGAATGTTCGCCGTG : 1234066 vulgar: NvOr137 131 216 . KQ414851.1 1234320 1234065 - 112 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234066 1234320 112 - . gene_id 6 ; sequence NvOr137 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234066 1234320 . - . KQ414851.1 exonerate:protein2genome:local exon 1234066 1234320 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234066 1234320 112 - . alignment_id 6 ; Query NvOr137 ; Align 1234321 132 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr137 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 128 -> 216 Target range: 1240091 -> 1239827 129 : ThrMetTyrIleIleAlaAlaPheCysSerTyrValPheLeuProIleValProVa : 147 :!!:!: !:!!.!!:!:...... :::::: ! :!!|||||| ||| SerValValLeuPheSerValLeuPheIlePheLeuValValProIlePheProPr 1240091 : TCAGTCGTTTTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcctcc : 1240037 148 : lLeuLeuAspValPheAsnProLeuAsnGlnThrArgSerArgPheTyrIleLeuG : 166 |||||||||:!!!!.!!.|||||||||:!!||||||:!!||| |||... oLeuLeuAspIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIlePheL 1240036 : tcttctggACATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatattca : 1239980 167 : lyGlyGluTyrPheIleIleAsnAsnValGluAspTyrGlyLysValTyrAlaPhe : 184 ...|||.!.||||||:!!!..! !|||.!. ! !! ..!||| ! ! ysValAsnTyrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPheHis 1239979 : aagttaaTTACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTTCAC : 1239926 185 : AspCysLeuAlaValIleValThrValTrpLeuIleSerAlaValAspSerMetTy : 203 ! !! !.!!..!|||..! !! ! ! !:!: !::! !!!:! !!!:|| LeuSerTrpThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIleTy 1239925 : TTGTCTTGGACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATA : 1239869 204 : rAlaAlaSerIleGluHisCysLeuGlyLeuPheAlaIle : 216 |!.! ! !|||.!.||| ! !||||||||||||:!: rValLeuLeuIleHisHisThrSerGlyLeuPheAlaVal 1239868 : CGTCCTTCTTATTCATCATACCAGCGGTCTGTTTGCTGTG : 1239828 vulgar: NvOr137 128 216 . KQ414851.1 1240091 1239827 - 103 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239828 1240091 103 - . gene_id 7 ; sequence NvOr137 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239828 1240091 . - . KQ414851.1 exonerate:protein2genome:local exon 1239828 1240091 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239828 1240091 103 - . alignment_id 7 ; Query NvOr137 ; Align 1240092 129 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr139 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 328 -> 373 Target range: 1228545 -> 1228410 329 : TyrLeuAsnGluTrpTyrThrCysSerThrArgAlaGlnLysLeuLeuAsnLeuMe : 347 |||! !::! !||||||! ! |||.!!!:! !|||::!:!!:!! !!:!!|| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 348 : tIleLeuArgCysSerLysProCysGlnLeuThrAlaGlyGlyIleTyrValMetA : 366 | !:!!|||..! !||||||||| |||||||||||||||:!:|||! !|||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 367 : snPheSerAsnPheAlaLysIle : 373 ||.!...!|||||||||!!.:!! snMetGluAsnPheAlaAsnVal 1228433 : ACATGGAGAACTTTGCAAACGTT : 1228411 vulgar: NvOr139 328 373 . KQ414851.1 1228545 1228410 - 122 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1228545 122 - . gene_id 1 ; sequence NvOr139 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228411 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1228545 122 - . alignment_id 1 ; Query NvOr139 ; Align 1228546 329 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr139 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 138 -> 216 Target range: 1243836 -> 1243605 139 : TyrSerLeuLeuProMetAlaProValLeuLeuAspMetIleAspProLeuAsnGl : 157 !:! !|||!!!|||:!: !||| !:!!||||||:!::!!...||||||||||| PheValLeuPheProLeuIleProProIleLeuAspValValSerProLeuAsnGl 1243836 : TTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGA : 1243782 158 : uThrArgProArgLeuTyrIleLeuGlyGlyGluTyrPheIleValAspAsnValG : 176 ||||||| !!|||:!! :::::: :::||| :!: !!|||! : uThrArgSerArgIleGluValIleLysLeuGlnTyr---LeuPheAspMetGluL 1243781 : GACTCGATCTCGGATAGaagtaataaaattgcaatac---cTGTTCGACAtggaga : 1243728 177 : luAspTyrGlyLysValTyrAlaPheGluLeuValProAlaAlaValThrValTrp : 194 :::::::: ...:::|||!.!!:! ! ! !:!! !:!!|||:!! ! ysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMet 1243727 : agaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATG : 1243674 195 : LeuIleCysAlaValAspSerMetTyrAlaAlaSerIleGluHisCysLeuGlyLe : 213 :!!||| !.!!:!!|||:!!:!:|||!.!!.!! !|||.!.||| ! !||||| ValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGlyLe 1243673 : GTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTT : 1243617 214 : uLeuAlaIle : 216 |!!!|||:!! uPheAlaVal 1243616 : ATTCGCTGTT : 1243606 vulgar: NvOr139 138 216 . KQ414851.1 1243836 1243605 - 118 M 31 93 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243836 118 - . gene_id 2 ; sequence NvOr139 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243836 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243836 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243836 118 - . alignment_id 2 ; Query NvOr139 ; Align 1243837 139 93 ; Align 1243744 171 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr139 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 137 -> 216 Target range: 1234302 -> 1234065 138 : AlaTyrSerLeuLeuProMetAlaProValLeuLeuAspMetIleAspProLeuAs : 156 !.!!:! !|||:!!|||:!:!.! ! !!!!||||||:!::!! !|||||||| ValPheLeuLeuValProLeuValPheProPheLeuAspValValLeuProLeuAs 1234302 : GTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGTCGTCCTTCCGTTAAA : 1234248 157 : nGluThrArgProArgLeuTyrIleLeuGlyGlyGluTyrPheIleValAspAsnV : 175 ||||||||||||||||! ! ! !!!! !!! !.!.|||.!. ! !!|||.!.! nGluThrArgProArgGlnGlnGlyPheArgValAsnTyrLeuTyrPheAspGluA 1234247 : TGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTATATTTCGACGAAG : 1234191 176 : alGluAspTyrGlyLysValTyrAlaPheGluLeuValProAlaAlaValThrVal : 193 .!!!: !!!:! !!..|||||| ! ! ! ! !|||!.!|||..!||| laAspTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaValValValVal 1234190 : CGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTC : 1234137 194 : TrpLeuIleCysAlaValAspSerMetTyrAlaAlaSerIleGluHisCysLeuGl : 212 !:!!||| !.!!|||||||||:!!||| ! !! !|||.!.|||..! !|| MetIleIleIleThrValAspSerLeuTyrMetIleIleIleHisHisAlaSerGl 1234136 : ATGATCATAATCACCGTAGACTCGTTGTACATGATAATAATTCACCATGCCAGCGG : 1234080 213 : yLeuLeuAlaIle : 216 |:!!!!!|||:!: yMetPheAlaVal 1234079 : AATGTTCGCCGTG : 1234066 vulgar: NvOr139 137 216 . KQ414851.1 1234302 1234065 - 118 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234066 1234302 118 - . gene_id 3 ; sequence NvOr139 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234066 1234302 . - . KQ414851.1 exonerate:protein2genome:local exon 1234066 1234302 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234066 1234302 118 - . alignment_id 3 ; Query NvOr139 ; Align 1234303 138 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr139 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 133 -> 216 Target range: 1224279 -> 1224030 134 : IleAlaAlaSerAlaTyrSerLeuLeuProMetAlaProValLeuLeuAspMetIl : 152 |||!.! !! !!.!|||! ! !!!!|||:!! ! ! !:!!||||||:!::! IleValLeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAspValVa 1224279 : ATAGTTCTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGT : 1224225 153 : eAspProLeuAsnGluThrArgProArgLeuTyrIleLeuGlyGlyGluTyrPheI : 171 !! |||||||||||||||||||||||| ! !:!:||| !! !...|||.!.. lAlaProLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIleP 1224224 : TGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATAT : 1224168 172 : leValAspAsnValGluAspTyrGlyLysValTyrAlaPheGluLeuValProAla : 189 !!:!!|||.!. !||| !!!:! !!..||| !! ! ! !! !..! !!.! heIleAspGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerVal 1224167 : TCATAGACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTG : 1224114 190 : AlaValThrValTrpLeuIleCysAlaValAspSerMetTyrAlaAlaSerIleGl : 208 ! ! !! ! !:!!||| !|||||||||! !:!:||| !.!!! !||| IleSerCysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePh 1224113 : ATTTCCTGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTT : 1224057 209 : uHisCysLeuGlyLeuLeuAlaIle : 216 ||| !! !||||||!!!|||:!: eHisLeuCysGlyLeuPheAlaVal 1224056 : TCACCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: NvOr139 133 216 . KQ414851.1 1224279 1224030 - 117 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224279 117 - . gene_id 4 ; sequence NvOr139 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224279 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224279 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224279 117 - . alignment_id 4 ; Query NvOr139 ; Align 1224280 134 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr139 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 131 -> 216 Target range: 1229485 -> 1229230 132 : IleValIleAlaAlaSerAlaTyrSerLeuLeuProMetAlaProValLeuLeuAs : 150 :!!:!!.!!||| !!!!!.!!:!! !|||:!!|||:!! ! ! ! !||||| LeuLeuPheAlaMetCysValPheLeuLeuValProLeuPheGlyProAlaLeuAs 1229485 : TTACTCTTCGCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGA : 1229431 151 : pMetIleAspProLeuAsnGluThrArgProArgLeuTyrIleLeuGlyGlyGluT : 169 |!!::!! !|||! !||||||||||||||||||! ! ! :!:!!! !!! !.!.| pIleValLeuProSerAsnGluThrArgProArgGlnGlnLeuPheArgValAsnT 1229430 : CATCGTCCTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACT : 1229374 170 : yrPheIleValAspAsnValGluAspTyrGlyLysValTyrAlaPheGluLeuVal : 187 ||.!.||| !!|||.!.!.!!!: !!!:! ! ! |||||| ! !!!! ! yrIleIlePheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPheTrp 1229373 : ATATAATTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTTTGG : 1229320 188 : ProAlaAlaValThrValTrpLeuIleCysAlaValAspSerMetTyrAlaAlaSe : 206 !.!! !||| !||| ! !||| !.!!|||||||||:!!||| ! !! CysThrIleValLeuValMetAlaIleIleThrValAspSerLeuTyrMetIleIl 1229319 : TGTACAATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGATCAT : 1229263 207 : rIleGluHisCysLeuGlyLeuLeuAlaIle : 216 !||| ! |||..! !|||:!!!!!|||||| eIleTyrHisAlaSerGlyMetPheAlaIle 1229262 : AATTTACCATGCCAGCGGAATGTTCGCTATA : 1229231 vulgar: NvOr139 131 216 . KQ414851.1 1229485 1229230 - 116 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229231 1229485 116 - . gene_id 5 ; sequence NvOr139 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229231 1229485 . - . KQ414851.1 exonerate:protein2genome:local exon 1229231 1229485 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229231 1229485 116 - . alignment_id 5 ; Query NvOr139 ; Align 1229486 132 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr139 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 328 -> 373 Target range: 1233381 -> 1233246 329 : TyrLeuAsnGluTrpTyrThrCysSerThrArgAlaGlnLysLeuLeuAsnLeuMe : 347 |||! !::! !||||||! ! !!.!!!:! !|||::!:!!:!! !! !|| TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMe 1233381 : TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGAT : 1233327 348 : tIleLeuArgCysSerLysProCysGlnLeuThrAlaGlyGlyIleTyrValMetA : 366 | !:!!|||..! !||||||||| |||||||||||||||:!:|||! !|||| tGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetA 1233326 : GCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGA : 1233270 367 : snPheSerAsnPheAlaLysIle : 373 ||.!...!|||||||||!!.:!! snMetGluAsnPheAlaAsnVal 1233269 : ACATGGAGAACTTTGCAAACGTT : 1233247 vulgar: NvOr139 328 373 . KQ414851.1 1233381 1233246 - 115 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233247 1233381 115 - . gene_id 6 ; sequence NvOr139 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1233247 1233381 . - . KQ414851.1 exonerate:protein2genome:local exon 1233247 1233381 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233247 1233381 115 - . alignment_id 6 ; Query NvOr139 ; Align 1233382 329 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr139 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 326 -> 370 Target range: 1222511 -> 1222379 327 : AspAlaTyrLeuAsnGluTrpTyrThrCysSerThrArgAlaGlnLysLeuLeuAs : 345 |||::!||| !::!:!!|||||| ! !!..!!:!!.!|||||||||:!! ! AspSerTyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTy 1222511 : GACAGTTACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTA : 1222457 346 : nLeuMetIleLeuArgCysSerLysProCysGlnLeuThrAlaGlyGlyIleTyrV : 364 ! !||| !:!!|||! !! !::!|||||| !|||||||||||||||:!::!!! rThrMetGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisG 1222456 : CACGATGCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATG : 1222400 365 : alMetAsnPheSerAsnPhe : 370 !||||||.!!..!!:!||| luMetAsnIleGluSerPhe 1222399 : AGATGAACATCGAGAGTTTC : 1222380 vulgar: NvOr139 326 370 . KQ414851.1 1222511 1222379 - 112 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222380 1222511 112 - . gene_id 7 ; sequence NvOr139 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1222380 1222511 . - . KQ414851.1 exonerate:protein2genome:local exon 1222380 1222511 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222380 1222511 112 - . alignment_id 7 ; Query NvOr139 ; Align 1222512 327 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr143 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 141 Query range: 327 -> 376 Target range: 1242808 -> 1242661 328 : PheAsnAspAlaTyrAsnAsnGluTrpTyrGluCysSerIleLysSerGlnArgLe : 346 |||...:!! !||||||::: !||||||:!! !!:!: !! !|||!:!:! PheThrAsnArgTyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIl 1242808 : tttaccAATAGATATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAAT : 1242754 347 : uLeuAlaPheMetMetLeuArgCysThrLysProCysGluLeuThrAlaGlyGlyI : 365 !||| !.!.:!:...:!!|||! ! !|||||||||:!!|||..!|||||||||: eLeuHisIleValGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyL 1242753 : ACTTCATATAGTACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGAT : 1242697 366 : leTyrThrMetAsnLeuGluAsnPheGlySerLeu : 376 !!||| !||||||:!!|||||||||||||||:!! euTyrGluMetAsnIleGluAsnPheGlySerVal 1242696 : TATACGAAATGAACATTGAGAATTTTGGATCAGTA : 1242662 vulgar: NvOr143 327 376 . KQ414851.1 1242808 1242661 - 141 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242662 1242808 141 - . gene_id 1 ; sequence NvOr143 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1242662 1242808 . - . KQ414851.1 exonerate:protein2genome:local exon 1242662 1242808 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242662 1242808 141 - . alignment_id 1 ; Query NvOr143 ; Align 1242809 328 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr143 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 329 -> 382 Target range: 1222511 -> 1222352 330 : AspAlaTyrAsnAsnGluTrpTyrGluCysSerIleLysSerGlnArgLeuLeuAl : 348 |||::!||| !::!:!!||||||||| !!:!!|||.!!|||!:!|||:!! AspSerTyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTy 1222511 : GACAGTTACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTA : 1222457 349 : aPheMetMetLeuArgCysThrLysProCysGluLeuThrAlaGlyGlyIleTyrT : 367 ! |||...:!!|||! !! !::!|||||| !|||||||||||||||:!::!! rThrMetGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisG 1222456 : CACGATGCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATG : 1222400 368 : hrMetAsnLeuGluAsnPheGlySerLeuValLysThrSerIleSer : 382 !||||||:!!|||!:!||||||! !:!! !!!.!.!! !|||!:! luMetAsnIleGluSerPheGlyIleValCysAsnAsnMetIleAsn 1222399 : AGATGAACATCGAGAGTTTCGGAATAGTATGTAATAATATGATAAAT : 1222353 vulgar: NvOr143 329 382 . KQ414851.1 1222511 1222352 - 139 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222353 1222511 139 - . gene_id 2 ; sequence NvOr143 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1222353 1222511 . - . KQ414851.1 exonerate:protein2genome:local exon 1222353 1222511 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222353 1222511 139 - . alignment_id 2 ; Query NvOr143 ; Align 1222512 330 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr143 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 137 Query range: 331 -> 376 Target range: 1228545 -> 1228410 332 : TyrAsnAsnGluTrpTyrGluCysSerIleLysSerGlnArgLeuLeuAlaPheMe : 350 |||::!::! !||||||:!! ||| !|||! !||||||:!!:!! !.!.|| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 351 : tMetLeuArgCysThrLysProCysGluLeuThrAlaGlyGlyIleTyrThrMetA : 369 |...:!!|||..! !||||||||| |||||||||||||||:!:||| !|||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 370 : snLeuGluAsnPheGlySerLeu : 376 ||:!!|||||||||!.!!:!:!! snMetGluAsnPheAlaAsnVal 1228433 : ACATGGAGAACTTTGCAAACGTT : 1228411 vulgar: NvOr143 331 376 . KQ414851.1 1228545 1228410 - 137 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1228545 137 - . gene_id 3 ; sequence NvOr143 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228411 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1228545 137 - . alignment_id 3 ; Query NvOr143 ; Align 1228546 332 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr143 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 331 -> 376 Target range: 1233381 -> 1233246 332 : TyrAsnAsnGluTrpTyrGluCysSerIleLysSerGlnArgLeuLeuAlaPheMe : 350 |||::!::! !||||||:!! !! !|||! !||||||:!!:!! ! || TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMe 1233381 : TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGAT : 1233327 351 : tMetLeuArgCysThrLysProCysGluLeuThrAlaGlyGlyIleTyrThrMetA : 369 |...:!!|||..! !|||||||||! |||||||||||||||:!:||| !|||| tGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetA 1233326 : GCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGA : 1233270 370 : snLeuGluAsnPheGlySerLeu : 376 ||:!!|||||||||!.!!:!:!! snMetGluAsnPheAlaAsnVal 1233269 : ACATGGAGAACTTTGCAAACGTT : 1233247 vulgar: NvOr143 331 376 . KQ414851.1 1233381 1233246 - 131 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233247 1233381 131 - . gene_id 4 ; sequence NvOr143 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1233247 1233381 . - . KQ414851.1 exonerate:protein2genome:local exon 1233247 1233381 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233247 1233381 131 - . alignment_id 4 ; Query NvOr143 ; Align 1233382 332 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr141 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 149 Query range: 131 -> 214 Target range: 1243854 -> 1243605 132 : PheAlaAlaValIleValTyrThrThrMetProLeuMetProPheLeuLeuAspIl : 150 ||| ! ! !|||:!!!:!..! !.!.||||||!!:||| :!!||||||:! PheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleLeuAspVa 1243854 : TTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGT : 1243800 151 : eIleLeuProLeuAsnGluSerArgProSerMetPheIleLeuAsnGlyGlnPheT : 169 !:!!! !||||||||||||!!!||| !! !!!!: ::::::... |||::: lValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuGlnTyrL 1243799 : TGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgcaatacc : 1243743 170 : yrValAspLysHisGluHisTyrLysLysLeuTyrAlaPheAspCysLeuCysIle : 187 !!|||! ...::::::::: ...||||||!.!!:! ! !!! !||| euPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSer 1243742 : TGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGCTGGTGCTCG : 1243689 188 : PheValIleValProAlaAlaLeuAlaValAspThrMetTyrValAlaCysThrGl : 206 |||:!!! !:!! !!.! !:!!.!!:!!|||.!!:!:||||||!.! !! !.! PheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValValIleIleHi 1243688 : TTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCA : 1243632 207 : uHisCysLeuGlyLeuPheAlaIle : 214 .||| ! !||||||||||||:!! sHisThrCysGlyLeuPheAlaVal 1243631 : TCACACGTGTGGCTTATTCGCTGTT : 1243606 vulgar: NvOr141 131 214 . KQ414851.1 1243854 1243605 - 149 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243854 149 - . gene_id 1 ; sequence NvOr141 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243854 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243854 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243854 149 - . alignment_id 1 ; Query NvOr141 ; Align 1243855 132 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr141 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 131 -> 214 Target range: 1224282 -> 1224030 132 : PheAlaAlaValIleValTyrThrThrMetProLeuMetProPheLeuLeuAspIl : 150 !:: !!.!:!!:!!||||||! !!:!.!.||||||!!: ! :!!||||||:! TrpIleValLeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAspVa 1224282 : TGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGT : 1224228 151 : eIleLeuProLeuAsnGluSerArgProSerMetPheIleLeuAsnGlyGlnPhe< : 169 !:!! !||||||||||||!!!|||||| !!! !.!!:!:||| ! !...!:! lValAlaProLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrI 1224227 : TGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACA : 1224171 170 : ->TyrValAspLysHisGluHisTyrLysLysLeuTyrAlaPheAspCysLeuCys : 186 !:!:!!|||:!!:!!||||||!:! ! !..:!! !! ! ! ! ! ! !! lePheIleAspGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSer 1224170 : TATTCATAGACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGC : 1224117 187 : IlePheValIleValProAlaAlaLeuAlaValAspThrMetTyrValAlaCysTh : 205 :!:.!! ! !! ! ! ! !:!!|||||||||! !:!:|||:!!.!! !! ValIleSerCysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIl 1224116 : GTGATTTCCTGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCAT : 1224060 206 : rGluHisCysLeuGlyLeuPheAlaIle : 214 ! ||| !! !||||||||||||:!: ePheHisLeuCysGlyLeuPheAlaVal 1224059 : TTTTCACCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: NvOr141 131 214 . KQ414851.1 1224282 1224030 - 116 M 37 111 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224282 116 - . gene_id 2 ; sequence NvOr141 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224282 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224282 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224282 116 - . alignment_id 2 ; Query NvOr141 ; Align 1224283 132 111 ; Align 1224169 169 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr141 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 133 -> 214 Target range: 1229476 -> 1229230 134 : AlaValIleValTyrThrThrMetProLeuMetProPheLeuLeuAspIleIleLe : 152 |||:!! !|||!:! ! !:!:||||||.!. ! !|||||||||:!!|| AlaMetCysValPheLeuLeuValProLeuPheGlyProAlaLeuAspIleValLe 1229476 : GCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCGTCCT : 1229422 153 : uProLeuAsnGluSerArgProSerMetPheIleLeuAsnGlyGlnPheTyrVal< : 171 ||||! !||||||!!!|||||| !!... :!:!!!!..! !.!.!:! :!! uProSerAsnGluThrArgProArgGlnGlnLeuPheArgValAsnTyrIleIleP 1229421 : TCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAATTT : 1229365 172 : ->AspLysHisGluHisTyrLysLysLeuTyrAlaPheAspCysLeuCysIlePhe : 188 |||:!! !!::!!!:! ! :!!||| ! ! !! !|||! !.!! heAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPheTrpCysThrIle 1229364 : TCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACAATC : 1229311 189 : ValIleValProAlaAlaLeuAlaValAspThrMetTyrValAlaCysThrGluHi : 207 |||:!!||| !||| !:!!.!!||||||:!!:!!|||:!! ! ! ! ! || ValLeuValMetAlaIleIleThrValAspSerLeuTyrMetIleIleIleTyrHi 1229310 : GTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGATCATAATTTACCA : 1229254 208 : sCysLeuGlyLeuPheAlaIle : 214 |..! !|||:!!||||||||| sAlaSerGlyMetPheAlaIle 1229253 : TGCCAGCGGAATGTTCGCTATA : 1229231 vulgar: NvOr141 133 214 . KQ414851.1 1229476 1229230 - 114 M 37 111 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229231 1229476 114 - . gene_id 3 ; sequence NvOr141 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229231 1229476 . - . KQ414851.1 exonerate:protein2genome:local exon 1229231 1229476 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229231 1229476 114 - . alignment_id 3 ; Query NvOr141 ; Align 1229477 134 111 ; Align 1229363 171 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr141 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 332 -> 377 Target range: 1228545 -> 1228410 333 : TyrAsnAsnGlnTrpTyrGluGlySerAlaLysSerLysThrLeuLeuLysIleLe : 351 |||::!::! !||||||:!!! !|||||||||! !:!! !:!!:!! ! !!::! TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 352 : uThrLeuArgCysValGluProCysLeuIleThrAlaGlyGlyLeuValThrMetA : 370 ! !:!!|||..!:!!:!!||||||:!!:!:||||||||||||||| ! !|||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 371 : snPheAlaThrTyrLeuThrIle : 377 ||.!.! !!.!!:! !!.!:!! snMetGluAsnPheAlaAsnVal 1228433 : ACATGGAGAACTTTGCAAACGTT : 1228411 vulgar: NvOr141 332 377 . KQ414851.1 1228545 1228410 - 105 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1228545 105 - . gene_id 4 ; sequence NvOr141 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228411 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1228545 105 - . alignment_id 4 ; Query NvOr141 ; Align 1228546 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr141 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 134 -> 214 Target range: 1234308 -> 1234065 135 : ValIleValTyrThrThrMetProLeuMetProPheLeuLeuAspIleIleLeuPr : 153 :!!:!!|||!:! ! !:!:||||||:!: ! !!!||||||:!!:!!||||| MetValValPheLeuLeuValProLeuValPheProPheLeuAspValValLeuPr 1234308 : ATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGTCGTCCTTCC : 1234254 154 : oLeuAsnGluSerArgProSerMetPheIleLeuAsnGlyGlnPhe<->TyrValA : 171 ||||||||||!!!|||||| !!..! !!!!!..! !.!.!:! ||| !!| oLeuAsnGluThrArgProArgGlnGlnGlyPheArgValAsnTyrLeuTyrPheA 1234253 : GTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTATATTTCG : 1234197 172 : spLysHisGluHisTyrLysLysLeuTyrAlaPheAspCysLeuCysIlePheVal : 189 ||:!! !!::!!!:! !..:!!||| ! ..!! ! !! ! !!||| spGluAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaValVal 1234196 : ACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAGTCGTT : 1234143 190 : IleValProAlaAlaLeuAlaValAspThrMetTyrValAlaCysThrGluHisCy : 208 :!!||| ! ! !:!!.!!||||||:!!:!!|||:!! ! ! !.!.|||.. ValValMetIleIleIleThrValAspSerLeuTyrMetIleIleIleHisHisAl 1234142 : GTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGATAATAATTCACCATGC : 1234086 209 : sLeuGlyLeuPheAlaIle : 214 ! !|||:!!||||||:!: aSerGlyMetPheAlaVal 1234085 : CAGCGGAATGTTCGCCGTG : 1234066 vulgar: NvOr141 134 214 . KQ414851.1 1234308 1234065 - 104 M 34 102 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234066 1234308 104 - . gene_id 5 ; sequence NvOr141 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234066 1234308 . - . KQ414851.1 exonerate:protein2genome:local exon 1234066 1234308 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234066 1234308 104 - . alignment_id 5 ; Query NvOr141 ; Align 1234309 135 102 ; Align 1234204 169 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr141 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 330 -> 374 Target range: 1222511 -> 1222379 331 : AspAlaTyrAsnAsnGlnTrpTyrGluGlySerAlaLysSerLysThrLeuLeuLy : 349 |||::!||| !::!:!!||||||||| ! !!!.!|||.!!:!!! !|||:!! ! AspSerTyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTy 1222511 : GACAGTTACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTA : 1222457 350 : sIleLeuThrLeuArgCysValGluProCysLeuIleThrAlaGlyGlyLeuValT : 368 ! :!! !:!!|||! !:!!..!||||||:!!:!!||||||||||||:!! ! rThrMetGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisG 1222456 : CACGATGCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATG : 1222400 369 : hrMetAsnPheAlaThrTyr : 374 !||||||.!!! !!:!!:! luMetAsnIleGluSerPhe 1222399 : AGATGAACATCGAGAGTTTC : 1222380 vulgar: NvOr141 330 374 . KQ414851.1 1222511 1222379 - 102 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222380 1222511 102 - . gene_id 6 ; sequence NvOr141 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1222380 1222511 . - . KQ414851.1 exonerate:protein2genome:local exon 1222380 1222511 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222380 1222511 102 - . alignment_id 6 ; Query NvOr141 ; Align 1222512 331 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr141 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 92 -> 223 Target range: 1453 -> 1911 93 : LeuTyrAspSerValAlaLysAsnTrpLysAsnIleThrGluLysHisGluArgGluIleLe : 113 ||| !..!.!!!.! !!!.:!!|||..!! ! ! ! !:!! |||! !!!:|||:! LeuIleSerGlyAlaArgAsnAspTrpSerIleGluArgProGlnGlyGluIleAspIleMe 1454 : CTTATTAGCGGTGCCAGGAACGACTGGTCGATCGAGAGACCACAAGGGGAGATCGACATTAT : 1514 114 : uValLysTyrSerGluArgGlyArgMetLeuThrLeuGlyTyrIle{T} >>>> Target : 129 !..!||||||:!!||||||||| ...||| |||:!!{.} 6 tThrLysTyrAlaGluArgGlyAlaPheLeuIleSerThrTyrLeu{V}++ 1515 : GACTAAATACGCCGAGAGGGGtgcttttttaatttcgacaTACCTT{G}gt........... : 1565 130 : Intron 1 >>>> {hr}TyrAsnPheAlaAlaValIleValTyrThrThrMetProLeu : 143 5 bp {.!} !! .!!!.!..!||||||:!!!:!..!:!!! !|||:!! ++{al}AsnAlaIleValCysValIleLeuPheValSerThrProVal 1566 : ..............ag{TG}AACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTG : 1669 144 : MetProPheLeuLeuAspIleIleLeuProLeuAsnGluSerArgProSerMetPheIleLe : 164 ! ||| !:!!|||||||||:!!|||||| !|||||||||||| ! ! !!:!|||! ThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTy 1670 : ACACCGCATATTTTGGACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTA : 1732 165 : uAsnGlyGlnPheTyrValAspLysHisGluHisTyrLysLysLeuTyrAlaPheAspCysL : 185 ! !.! ! !:!!:!..!|||:!!|||:!!:!! !! ! ! :!! !.!! ! ...! rProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaS 1733 : CCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGT : 1795 186 : euCysIlePheValIleValProAlaAlaLeuAlaValAspThrMetTyrValAlaCysThr : 205 ! |||.!.|||:!: !! !!.! !!!!||| !||||||! |||:!! ! !..! erValIleLeuValValPheTyrValTyrPheAlaCysAspThrSerTyrIleTyrValVal 1796 : CCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTG : 1855 206 : GluHisCysLeuGlyLeuPheAlaIleIleLysTyrArgLeuAlaMetSerAsp : 223 :!!||| !!! !||||||!!.|||:!: ! :::::: :::||| GlnHisGlyCysGlyLeuLeuAlaValSerGly***LysIleArgSerAsnAsp 1856 : CAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaattcgatcgaacgat : 1911 vulgar: NvOr141 92 223 . KQ414921.1 1453 1911 + 155 M 36 108 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1454 1911 155 + . gene_id 1 ; sequence NvOr141 ; gene_orientation + KQ414921.1 exonerate:protein2genome:local cds 1454 1562 . + . KQ414921.1 exonerate:protein2genome:local exon 1454 1562 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 1563 1564 . + . intron_id 1 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 1563 1627 . + . intron_id 1 KQ414921.1 exonerate:protein2genome:local splice3 1626 1627 . + . intron_id 0 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 1628 1911 . + . KQ414921.1 exonerate:protein2genome:local exon 1628 1911 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1454 1911 155 + . alignment_id 1 ; Query NvOr141 ; Align 1454 93 108 ; Align 1630 130 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr140 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 333 -> 393 Target range: 3173 -> 3353 334 : TyrSerAsnGluTrpTyrGluThrSerIleArgSerGlnAsnLeuLeuLysPheMetArgLe : 354 |||||| ! !||||||.!.!:!..!! |||!!!|||:::|||!!! !!!. ! ! TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeuAr 3174 : TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGTTAAG : 3234 355 : uArgCysLeuThrProCysGlnLeuThrAlaGlyGlyIleTyrValMetAsnPheAlaAsnP : 375 !!.!||||||:!! !! !|||:!!||||||||||||:!! !..!||||||!!. !!:!| gAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGlnSerP 3235 : AAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAAAGTT : 3297 376 : heAlaSerIleIleLysThrSerThrSerTyrIleThrValPheAlaSerPheThr : 393 ||:!!..!:!!! !::::!!||||||! ! !:!! !:!!! ! !..!!:!:!! heSerGluValThrArgSerSerThrIleIleLeuLeuIleSerArgGluTyrSer 3298 : TCTCAGAGGTAACACGTTCATCGACAATTATTCTTCTAATATCTCGAGAATATTCA : 3353 vulgar: NvOr140 333 393 . KQ414921.1 3173 3353 + 104 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 3174 3353 104 + . gene_id 1 ; sequence NvOr140 ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 3174 3353 . + . KQ414921.1 exonerate:protein2genome:local exon 3174 3353 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 3174 3353 104 + . alignment_id 1 ; Query NvOr140 ; Align 3174 334 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr143 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 331 -> 389 Target range: 3173 -> 3425 332 : TyrAsnAsnGluTrpTyrGluCysSerIleLysSerGlnArgLeuLeuAlaPheMetMetLe : 352 |||!:! ! !||||||.!. !!..!! !:!!!!||| !|||!!!!.!!!. !:!: TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeuAr 3174 : TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGTTAAG : 3234 353 : uArgCysThrLysProCysGluLeuThrAlaGlyGlyIleTyrThrMetAsnLeuGluAsnP : 373 !!.!||| !... !! !:!!:!!||||||||||||:!! !||||||||||||:!!!:!| gAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGlnSerP 3235 : AAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAAAGTT : 3297 374 : heGlySer >>>> Target Intron 1 >>>> LeuValLysThrSerIleSerTyrI : 384 ||..!..! 78 bp :!!||||||||||||:!!|||||| heSerGlu++ ++IleValLysThrSerValSerTyrT 3298 : TCTCAGAGgt.........................agATTGTAAAGACGTCTGTCTCGTACT : 3408 385 : leAlaValPheAlaSer : 389 ! !|||.!. !||| yrMetValLeuLysSer 3409 : ACATGGTACTGAAATCC : 3425 vulgar: NvOr143 331 389 . KQ414921.1 3173 3425 + 122 M 44 132 5 0 2 I 0 74 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 3174 3425 122 + . gene_id 1 ; sequence NvOr143 ; gene_orientation + KQ414921.1 exonerate:protein2genome:local cds 3174 3305 . + . KQ414921.1 exonerate:protein2genome:local exon 3174 3305 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 3306 3307 . + . intron_id 1 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 3306 3383 . + . intron_id 1 KQ414921.1 exonerate:protein2genome:local splice3 3382 3383 . + . intron_id 0 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 3384 3425 . + . KQ414921.1 exonerate:protein2genome:local exon 3384 3425 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 3174 3425 122 + . alignment_id 1 ; Query NvOr143 ; Align 3174 332 132 ; Align 3384 376 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr142 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 330 -> 393 Target range: 3158 -> 3425 331 : IleLeuTyrAspAlaTyrAsnAsnGluTrpTyrGluCysSerLysLysThrLysThrLeuLe : 351 :!!! !!:!..! !|||!:! ! !||||||.!. !!..!|||!:!|||:!!:!!|||!! ValHisPheSerArgTyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPh 3159 : GTCCATTTTTCTAGATACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTT : 3219 352 : uLysPheMetMetLeuArgCysIleGluProCysGlnLeuThrAlaGlyGlyLeuTyrValM : 372 ! !!!. !:!: !!.!|||:!!... !! !|||:!!||||||||||||||| !..!| eValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrM 3220 : TGTATTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAA : 3282 373 : etAsnIleAlaAsnPheGlySer >>>> Target Intron 1 >>>> LeuAlaLysT : 383 |||||:!: !!:!|||..!..! 78 bp :!!!.!|||| etAsnLeuGlnSerPheSerGlu++ ++IleValLysT 3283 : TGAACTTGCAAAGTTTCTCAGAGgt.........................agATTGTAAAGA : 3393 384 : hrSerMetSerTyrIleThrValPheAlaSer : 393 |||||:!:|||||| !! !|||.!. !||| hrSerValSerTyrTyrMetValLeuLysSer 3394 : CGTCTGTCTCGTACTACATGGTACTGAAATCC : 3425 vulgar: NvOr142 330 393 . KQ414921.1 3158 3425 + 124 M 49 147 5 0 2 I 0 74 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 3159 3425 124 + . gene_id 1 ; sequence NvOr142 ; gene_orientation + KQ414921.1 exonerate:protein2genome:local cds 3159 3305 . + . KQ414921.1 exonerate:protein2genome:local exon 3159 3305 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 3306 3307 . + . intron_id 1 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 3306 3383 . + . intron_id 1 KQ414921.1 exonerate:protein2genome:local splice3 3382 3383 . + . intron_id 0 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 3384 3425 . + . KQ414921.1 exonerate:protein2genome:local exon 3384 3425 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 3159 3425 124 + . alignment_id 1 ; Query NvOr142 ; Align 3159 331 147 ; Align 3384 380 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr139 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 328 -> 386 Target range: 3173 -> 3425 329 : TyrLeuAsnGluTrpTyrThrCysSerThrArgAlaGlnLysLeuLeuAsnLeuMetIleLe : 349 ||| ! ! !||||||!.! !!..!! !|||.!!|||..!|||!!! ||| !:!! TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeuAr 3174 : TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGTTAAG : 3234 350 : uArgCysSerLysProCysGlnLeuThrAlaGlyGlyIleTyrValMetAsnPheSerAsnP : 370 !!.!||| !... !! !|||:!!||||||||||||:!! !..!||||||!!...!!:!| gAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGlnSerP 3235 : AAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAAAGTT : 3297 371 : heAlaLys >>>> Target Intron 1 >>>> IleValLysThrSerMetSerTyrM : 381 ||:!!:!! 78 bp |||||||||||||||:!:|||||| heSerGlu++ ++IleValLysThrSerValSerTyrT 3298 : TCTCAGAGgt.........................agATTGTAAAGACGTCTGTCTCGTACT : 3408 382 : etThrValPheAlaSer : 386 ! !|||.!. !||| yrMetValLeuLysSer 3409 : ACATGGTACTGAAATCC : 3425 vulgar: NvOr139 328 386 . KQ414921.1 3173 3425 + 118 M 44 132 5 0 2 I 0 74 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 3174 3425 118 + . gene_id 1 ; sequence NvOr139 ; gene_orientation + KQ414921.1 exonerate:protein2genome:local cds 3174 3305 . + . KQ414921.1 exonerate:protein2genome:local exon 3174 3305 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 3306 3307 . + . intron_id 1 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 3306 3383 . + . intron_id 1 KQ414921.1 exonerate:protein2genome:local splice3 3382 3383 . + . intron_id 0 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 3384 3425 . + . KQ414921.1 exonerate:protein2genome:local exon 3384 3425 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 3174 3425 118 + . alignment_id 1 ; Query NvOr139 ; Align 3174 329 132 ; Align 3384 373 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr137 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 328 -> 386 Target range: 3173 -> 3425 329 : TyrLeuAsnGluTrpTyrThrCysProThrArgAlaGlnLysLeuLeuGlyLeuMetThrLe : 349 ||| ! ! !||||||!.! !! !! !|||.!!|||..!|||!!!! !||| ! ! TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeuAr 3174 : TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGTTAAG : 3234 350 : uArgCysSerLysProCysGlnLeuThrAlaGlyGlyMetTyrValMetAsnPheSerAsnP : 370 !!.!||| !... !! !|||:!!||||||||||||:!: !..!||||||!!...!!:!| gAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGlnSerP 3235 : AAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAAAGTT : 3297 371 : heAlaLys >>>> Target Intron 1 >>>> IleValLysThrSerMetSerTyrM : 381 ||:!!:!! 78 bp |||||||||||||||:!:|||||| heSerGlu++ ++IleValLysThrSerValSerTyrT 3298 : TCTCAGAGgt.........................agATTGTAAAGACGTCTGTCTCGTACT : 3408 382 : etThrValLeuAlaSer : 386 ! !|||||| !||| yrMetValLeuLysSer 3409 : ACATGGTACTGAAATCC : 3425 vulgar: NvOr137 328 386 . KQ414921.1 3173 3425 + 118 M 44 132 5 0 2 I 0 74 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 3174 3425 118 + . gene_id 1 ; sequence NvOr137 ; gene_orientation + KQ414921.1 exonerate:protein2genome:local cds 3174 3305 . + . KQ414921.1 exonerate:protein2genome:local exon 3174 3305 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 3306 3307 . + . intron_id 1 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 3306 3383 . + . intron_id 1 KQ414921.1 exonerate:protein2genome:local splice3 3382 3383 . + . intron_id 0 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 3384 3425 . + . KQ414921.1 exonerate:protein2genome:local exon 3384 3425 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 3174 3425 118 + . alignment_id 1 ; Query NvOr137 ; Align 3174 329 132 ; Align 3384 373 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr141 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 129 -> 215 Target range: 32488 -> 32746 130 : TyrAsnPheAlaAlaValIleValTyrThrThrMetProLeuMetProPheLeuLeuAsp : 149 !:! !:! !!.!:!!.!! !|||.!!! !:!!! !!!!:!!|||!:!:!!:!!||| PheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAsp 32489 : TTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGAC : 32546 150 : IleIleLeuProLeuAsnGluSerArgProSerMetPheIleLeuAsnGlyGlnPheTyr : 169 :!:||| !||||||||||||||||||! ! !:!:.!. ! ! !|||:!!!:!!:! ValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPhe 32547 : GTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTC : 32606 170 : ValAspLysHisGluHisTyrLysLysLeuTyrAlaPheAspCysLeuCysIlePheVal : 189 ||||||:::...::::::::: !:!! ! ! ! ! !:!! !:!! ValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeu 32607 : GTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTT : 32666 190 : IleValProAlaAlaLeuAlaValAspThrMetTyrValAlaCysThrGluHisCysLeu : 209 !:!! !!!.!||| !|||||||||:::::::::::: ! ||| !! ! GlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCys 32667 : GGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGC : 32726 210 : GlyLeuPheAlaIleIle : 215 !.! !||| !|||:!! AlaLysPheAsnIleLeu 32727 : GCCAAATTCAATATTCTC : 32746 vulgar: NvOr141 129 215 . KQ415081.1 32488 32746 + 106 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32489 32746 106 + . gene_id 1 ; sequence NvOr141 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32489 32746 . + . KQ415081.1 exonerate:protein2genome:local exon 32489 32746 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32489 32746 106 + . alignment_id 1 ; Query NvOr141 ; Align 32489 130 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr138INT Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 301 -> 361 Target range: 26746 -> 27638 302 : TyrLeuAsnGluTrpTyrAlaCysProThrArgAlaGlnLysLeuLeuGlyLeuMetThr : 321 |||! !......|||||||||...|||||||||||||||||||||||| !|||:!! ! TyrTyrGlySerTrpTyrAlaAlaProThrArgAlaGlnLysLeuLeuLeuLeuValLeu 26747 : TATTACGGAAGCTGGTACGCGGCGCCAACGCGGGCACAAAAATTGCTGCTGCTGGTGTTG : 26804 322 : LeuArgCysSerLysProCysHisLeuThrAlaGlyGlyMetTyrValMetAsnLeuSer : 341 ! !!:!|||! ! !|||||| !|||:!!|||!.! !!!: !..! :::|||..! GlnLysCysMetValProCysSerLeuSerAlaAlaLysIleValThrAlaSerLeuGln 26805 : CAGAAATGCATGGTGCCTTGTAGTTTATCGGCCGCTAAAATTGTCACCGCATCGCTGCAA : 26864 342 : AsnPheAlaLys >>>> Target Intron 1 >>>> IleValLysThrSerLeuS : 352 ! !!:!|||! ! 712 bp ||||||:!!||||||:!!| IleTyrAlaThr++ ++IleValGlnThrSerValS 26865 : ATCTATGCTACGgt.........................agATCGTCCAGACGTCGGTAT : 27609 353 : erTyrMetThrValLeuAlaSerPheArg : 361 |||||.!.:!!|||||| !:!!.!.!:! erTyrPheSerValLeuTyrAlaLeuLys 27610 : CTTACTTCTCTGTGCTGTACGCGCTGAAA : 27638 vulgar: NvOr138INT 301 361 . KQ415081.1 26746 27638 + 126 M 44 132 5 0 2 I 0 708 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 26747 27638 126 + . gene_id 1 ; sequence NvOr138INT ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 26747 26878 . + . KQ415081.1 exonerate:protein2genome:local exon 26747 26878 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 26879 26880 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 26879 27590 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 27589 27590 . + . intron_id 0 ; splice_site "aG" KQ415081.1 exonerate:protein2genome:local cds 27591 27638 . + . KQ415081.1 exonerate:protein2genome:local exon 27591 27638 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 26747 27638 126 + . alignment_id 1 ; Query NvOr138INT ; Align 26747 302 132 ; Align 27591 346 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr139 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 328 -> 388 Target range: 26746 -> 27638 329 : TyrLeuAsnGluTrpTyrThrCysSerThrArgAlaGlnLysLeuLeuAsnLeuMetIle : 348 |||! !......||||||.!!... !!||||||||||||||||||||| |||:!!:!: TyrTyrGlySerTrpTyrAlaAlaProThrArgAlaGlnLysLeuLeuLeuLeuValLeu 26747 : TATTACGGAAGCTGGTACGCGGCGCCAACGCGGGCACAAAAATTGCTGCTGCTGGTGTTG : 26804 349 : LeuArgCysSerLysProCysGlnLeuThrAlaGlyGlyIleTyrValMetAsnPheSer : 368 ! !!:!|||! ! !||||||...|||:!!|||!.! !||| !..! :::.!...! GlnLysCysMetValProCysSerLeuSerAlaAlaLysIleValThrAlaSerLeuGln 26805 : CAGAAATGCATGGTGCCTTGTAGTTTATCGGCCGCTAAAATTGTCACCGCATCGCTGCAA : 26864 369 : AsnPheAlaLys >>>> Target Intron 1 >>>> IleValLysThrSerMetS : 379 ! !!:!|||! ! 712 bp ||||||:!!||||||:!:| IleTyrAlaThr++ ++IleValGlnThrSerValS 26865 : ATCTATGCTACGgt.........................agATCGTCCAGACGTCGGTAT : 27609 380 : erTyrMetThrValPheAlaSerPheArg : 388 |||||.!.:!!|||.!. !:!!.!.!:! erTyrPheSerValLeuTyrAlaLeuLys 27610 : CTTACTTCTCTGTGCTGTACGCGCTGAAA : 27638 vulgar: NvOr139 328 388 . KQ415081.1 26746 27638 + 114 M 44 132 5 0 2 I 0 708 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 26747 27638 114 + . gene_id 1 ; sequence NvOr139 ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 26747 26878 . + . KQ415081.1 exonerate:protein2genome:local exon 26747 26878 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 26879 26880 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 26879 27590 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 27589 27590 . + . intron_id 0 ; splice_site "aG" KQ415081.1 exonerate:protein2genome:local cds 27591 27638 . + . KQ415081.1 exonerate:protein2genome:local exon 27591 27638 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 26747 27638 114 + . alignment_id 1 ; Query NvOr139 ; Align 26747 329 132 ; Align 27591 373 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr137 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 328 -> 388 Target range: 26746 -> 27638 329 : TyrLeuAsnGluTrpTyrThrCysProThrArgAlaGlnLysLeuLeuGlyLeuMetThr : 348 |||! !......||||||.!!...|||||||||||||||||||||||| !|||:!! ! TyrTyrGlySerTrpTyrAlaAlaProThrArgAlaGlnLysLeuLeuLeuLeuValLeu 26747 : TATTACGGAAGCTGGTACGCGGCGCCAACGCGGGCACAAAAATTGCTGCTGCTGGTGTTG : 26804 349 : LeuArgCysSerLysProCysGlnLeuThrAlaGlyGlyMetTyrValMetAsnPheSer : 368 ! !!:!|||! ! !||||||...|||:!!|||!.! !!!: !..! :::.!...! GlnLysCysMetValProCysSerLeuSerAlaAlaLysIleValThrAlaSerLeuGln 26805 : CAGAAATGCATGGTGCCTTGTAGTTTATCGGCCGCTAAAATTGTCACCGCATCGCTGCAA : 26864 369 : AsnPheAlaLys >>>> Target Intron 1 >>>> IleValLysThrSerMetS : 379 ! !!:!|||! ! 712 bp ||||||:!!||||||:!:| IleTyrAlaThr++ ++IleValGlnThrSerValS 26865 : ATCTATGCTACGgt.........................agATCGTCCAGACGTCGGTAT : 27609 380 : erTyrMetThrValLeuAlaSerPheArg : 388 |||||.!.:!!|||||| !:!!.!.!:! erTyrPheSerValLeuTyrAlaLeuLys 27610 : CTTACTTCTCTGTGCTGTACGCGCTGAAA : 27638 vulgar: NvOr137 328 388 . KQ415081.1 26746 27638 + 119 M 44 132 5 0 2 I 0 708 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 26747 27638 119 + . gene_id 1 ; sequence NvOr137 ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 26747 26878 . + . KQ415081.1 exonerate:protein2genome:local exon 26747 26878 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 26879 26880 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 26879 27590 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 27589 27590 . + . intron_id 0 ; splice_site "aG" KQ415081.1 exonerate:protein2genome:local cds 27591 27638 . + . KQ415081.1 exonerate:protein2genome:local exon 27591 27638 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 26747 27638 119 + . alignment_id 1 ; Query NvOr137 ; Align 26747 329 132 ; Align 27591 373 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr141 Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 92 -> 223 Target range: 29 -> 487 93 : LeuTyrAspSerValAlaLysAsnTrpLysAsnIleThrGluLysHisGluArgGluIleLeuV : 114 ||| !..!.!!!.! !!!.:!!|||..!! ! ! ! !:!! |||! !!!:|||:!!. LeuIleSerGlyAlaArgAsnAspTrpSerIleGlyArgProGlnGlyGluIleAspIleMetT 30 : CTTATTAGCGGTGCCAGGAACGACTGGTCGATCGGGAGACCACAAGGGGAGATCGACATTATGA : 93 115 : alLysTyrSerGluArgGlyArgMetLeuThrLeuGlyTyrIle{T} >>>> Target Int : 129 .!||||||:!!||||||||| ...||| |||:!!{.} 65 bp hrLysTyrAlaGluArgGlyAlaPheLeuIleSerThrTyrLeu{V}++ 94 : CTAAATACGCCGAGAGGGGtgcttttttaatttcgacaTACCTT{G}gt............... : 141 130 : ron 1 >>>> {hr}TyrAsnPheAlaAlaValIleValTyrThrThrMetProLeuMetPro : 145 {.!} !! .!!!.!..!||||||:!!!:!..!:!!! !|||:!!! ||| ++{al}AsnAlaIleValCysValIleLeuPheValSerThrProValThrPro 142 : ..........ag{TG}AACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCG : 251 146 : PheLeuLeuAspIleIleLeuProLeuAsnGluSerArgProSerMetPheIleLeuAsnGlyG : 167 !:!!|||||||||:!!|||||| !|||||||||||| ! ! !!:!|||! ! !.! HisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaT 252 : CATATTTTGGACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCT : 317 168 : lnPheTyrValAspLysHisGluHisTyrLysLysLeuTyrAlaPheAspCysLeuCysIlePh : 188 ! !:!!:!..!|||:!!|||:!!:!! !! ! ! :!! !.!! ! ...! ! |||.! yrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLe 318 : ATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCT : 380 189 : eValIleValProAlaAlaLeuAlaValAspThrMetTyrValAlaCysThrGluHisCysLeu : 209 .|||:!: !! !!.! !!!!||| !||||||! |||:!! ! !..!:!!||| !!! ! uValValPheTyrValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCys 381 : GGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGC : 443 210 : GlyLeuPheAlaIleIleLysTyrArgLeuAlaMetSerAsp : 223 ||||||!!.|||:!: ! :::::: :::||| GlyLeuLeuAlaValSerGly***LysIleArgSerAsnAsp 444 : GGATTGTTGGCCGTGTCCGGgtaaaaaattcgatcgaacgat : 487 vulgar: NvOr141 92 223 . LHQN01023902.1 29 487 + 154 M 36 108 S 0 1 5 0 2 I 0 61 3 0 2 S 1 2 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 30 487 154 + . gene_id 1 ; sequence NvOr141 ; gene_orientation + LHQN01023902.1 exonerate:protein2genome:local cds 30 138 . + . LHQN01023902.1 exonerate:protein2genome:local exon 30 138 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local splice5 139 140 . + . intron_id 1 ; splice_site "GT" LHQN01023902.1 exonerate:protein2genome:local intron 139 203 . + . intron_id 1 LHQN01023902.1 exonerate:protein2genome:local splice3 202 203 . + . intron_id 0 ; splice_site "AG" LHQN01023902.1 exonerate:protein2genome:local cds 204 487 . + . LHQN01023902.1 exonerate:protein2genome:local exon 204 487 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 30 487 154 + . alignment_id 1 ; Query NvOr141 ; Align 30 93 108 ; Align 206 130 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr140 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 328 -> 381 Target range: 2542 -> 2701 329 : LeuPheGluAspAlaTyrSerAsnGluTrpTyrGluThrSerIleArgSerGlnAsnLeuLe : 349 ||||||! ! !|||||| :!!||||||.!.!:!||| |||!!!|||!.!|||! LeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGlnThrLeuTy 2543 : TTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAAACTCTGTA : 2603 350 : uLysPheMetArgLeuArgCysLeuThrProCysGlnLeuThrAlaGlyGlyIleTyrValM : 370 ! !.!. ! !||| !!||||||||| !|||||||||||||||:!: ! !: rValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGlyLeuIleSerL 2604 : CGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGATTTCCT : 2666 371 : etAsnPheAlaAsnPheAlaSerIleIleLysThr : 381 !!|||!!.! !!.!||||||..!:!!! !! !||| euAsnLeuGluThrPheAlaGluValAsnMetThr 2667 : TGAATTTGGAGACTTTTGCCGAGGTAAATATGACA : 2701 vulgar: NvOr140 328 381 . LHQN01025741.1 2542 2701 + 102 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 2543 2701 102 + . gene_id 1 ; sequence NvOr140 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 2543 2701 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2543 2701 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 2543 2701 102 + . alignment_id 1 ; Query NvOr140 ; Align 2543 329 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr140 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 128 -> 215 Target range: 4978 -> 5236 129 : MetTyrMetThrSerAlaLeuLeuPhePheIleIleLeuProIleThrProMetValLeuAs : 149 :!!:!!!!::!!! !..! ! !.!.|||!!: !||||||.!!..! !! !:!!|||:! ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAs 4979 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGA : 5039 150 : nValIleLysProLeuAsnGluSerArgProTrpAspPheIleMetHisGlyGluPheProV : 170 !:!!:!!! !||||||||||||!!!||| !! !! |||:!! ! !.! ! !:! !| pIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheV 5040 : CATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCG : 5102 171 : alAsnAspMetHisAlaHisTyrGlyGluIleTyrLeuPheAspSerLeuAlaCysIleAla : 190 ||:!!!!: ! !|||||| !||| ! ! ! !|||!.! :!! ! alAspGluAspLysTyrHisTyr---LeuIleValGlyHisMetTyrLeuValValValMet 5103 : TCGACGAGGACAAATATCATTAC---TTGATCGTAGGGCATATGTATCTTGTAGTGGTAATG : 5159 191 : ThrValLeuValPheCysThrValAspSerMetTyrAlaThrCysIleGluHisCysIleGl : 211 !:!!! !|||||||||.!! !|||:!!! |||!.! !..!:!::!!|||..! !|| LeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGl 5160 : CTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGG : 5222 212 : yLeuPheAlaIle : 215 ||||!!.|||||| yLeuLeuAlaIle 5223 : ATTGTTGGCCATT : 5236 vulgar: NvOr140 128 215 . LHQN01025741.1 4978 5236 + 101 M 49 147 G 1 0 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4979 5236 101 + . gene_id 2 ; sequence NvOr140 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4979 5236 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4979 5236 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 4979 5236 101 + . alignment_id 2 ; Query NvOr140 ; Align 4979 129 147 ; Align 5126 179 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr139 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 129 -> 216 Target range: 4978 -> 5236 130 : MetTyrIleValIleAlaAlaSerAlaTyrSerLeuLeuProMetAlaProValLeuLeuAs : 150 :!!:!!||| !:!!..!|||:!! !!:!! !! !||||||.!.!.! !! !:!!||||| ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAs 4979 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGA : 5039 151 : pMetIleAspProLeuAsnGluThrArgProArgLeuTyrIleLeuGlyGlyGluTyrPheI : 171 |!!::!! |||||||||||||||||| !!||||||!:!:!!! ! !!.! ! ||||||: pIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheV 5040 : CATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCG : 5102 172 : leValAspAsnValGluAspTyrGlyLysValTyrAlaPheGluLeuValProAlaAlaVal : 191 !!! !!!::!! ! ! !!||| !! ||| !.!. ! |||||| !.!!.!:!! alAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuVal---ValValMet 5103 : TCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTA---GTGGTAATG : 5159 192 : ThrValTrpLeuIleCysAlaValAspSerMetTyrAlaAlaSerIleGluHisCysLeuGl : 212 !:!!! :!!.!!|||||| !|||:!!! |||!.! !:!!:!::!!|||..!! !|| LeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGl 5160 : CTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGG : 5222 213 : yLeuLeuAlaIle : 216 ||||||||||||| yLeuLeuAlaIle 5223 : ATTGTTGGCCATT : 5236 vulgar: NvOr139 129 216 . LHQN01025741.1 4978 5236 + 129 M 58 174 G 1 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4979 5236 129 + . gene_id 1 ; sequence NvOr139 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4979 5236 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4979 5236 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 4979 5236 129 + . alignment_id 1 ; Query NvOr139 ; Align 4979 130 174 ; Align 5153 189 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr143 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 322 -> 386 Target range: 2530 -> 3624 323 : ArgSerSerAlaIlePheAsnAspAlaTyrAsnAsnGluTrpTyrGluCysSerIleLysSe : 343 |||! !..!! !:!:||| ! ! !|||!:! :!!||||||.!. !!||| !:!!! ArgPheGlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgTh 2531 : AGATTTCAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAAC : 2591 344 : rGlnArgLeuLeuAlaPheMetMetLeuArgCysThrLysProCysGluLeuThrAlaGlyG : 364 !|||! !|||! !!.!.!. :!! !||| !! !! ||| !||||||||||||| rGlnThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyG 2592 : GCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAG : 2654 365 : lyIleTyrThrMetAsnLeuGluAsnPheGlySer >>>> Target Intron 1 >>>> : 376 ||:!: !:!!:!!|||||||||!.!|||!.!..! 902 bp lyLeuIleSerLeuAsnLeuGluThrPheAlaGlu++ 2655 : GACTGATTTCCTTGAATTTGGAGACTTTTGCCGAGgt......................... : 2692 377 : LeuValLysThrSerIleSerTyrIleAlaVal : 386 !:!!||||||||||||||||||.!!|||||| ++ThrLeuLysThrSerIleSerTyrPheAlaVal 2693 : agACTTTAAAAACTTCAATCTCCTATTTCGCGGTA : 3624 vulgar: NvOr143 322 386 . LHQN01025741.1 2530 3624 + 105 M 53 159 5 0 2 I 0 898 3 0 2 M 11 33 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 2531 3624 105 + . gene_id 1 ; sequence NvOr143 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 2531 2689 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2531 2689 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 2690 2691 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 2690 3591 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 3590 3591 . + . intron_id 0 ; splice_site "aG" LHQN01025741.1 exonerate:protein2genome:local cds 3592 3624 . + . LHQN01025741.1 exonerate:protein2genome:local exon 3592 3624 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 2531 3624 105 + . alignment_id 1 ; Query NvOr143 ; Align 2531 323 159 ; Align 3592 376 33 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr132 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 128 -> 214 Target range: 4978 -> 5236 129 : MetTyrMetMetThrAlaLeuIleValPheIleLeuLeuProMetTyrProIleMetThrAs : 149 :!!:!!!!: ! !..! ! !:!!|||!!:! !||||||.!. !! !!: !|| ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAs 4979 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGA : 5039 150 : pValIleValProLeuAspHisProArgAlaArgMetPheIleLeuAsnGlyAspTyrLeuV : 170 |:!!:!!:!!||||||:!!.!. !!|||||||||:!!|||:!!! ! !.! !!|||!!!| pIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheV 5040 : CATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCG : 5102 171 : alAspArgAspGluTyrTyrPheGlnIleTyrValPheGluSerThrSerAlaAlaLeuThr : 190 |||||..!|||:!!|||:!!!:! !||| ! ! ! !! ! ! !!.!!.!:!! ! alAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeu 5103 : TCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTT : 5162 191 : ValPheIleLeuCysSerThrAspProMetTyrAlaAlaIleValGluHisCysLeuGlyLe : 211 :!!! !:!!!!!|||:!! !||| !!! |||!.! ! !|||:!!|||..!! !||||| IleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLe 5163 : ATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATT : 5225 212 : uPheCysIle : 214 |!!...!||| uLeuAlaIle 5226 : GTTGGCCATT : 5236 vulgar: NvOr132 128 214 . LHQN01025741.1 4978 5236 + 129 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4979 5236 129 + . gene_id 1 ; sequence NvOr132 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4979 5236 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4979 5236 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4979 5236 129 + . alignment_id 1 ; Query NvOr132 ; Align 4979 129 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr141 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 136 -> 214 Target range: 5002 -> 5236 137 : ValTyrThrThrMetProLeuMetProPheLeuLeuAspIleIleLeuProLeuAsnGluSe : 157 :!!!:!! ! !:!!|||!!!:!! !! :!!|||||||||:!!:!!||||||||||||!! LeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluTh 5003 : CTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGAC : 5063 158 : rArgProSerMetPheIleLeuAsnGlyGlnPheTyrValAspLysHisGluHisTyrLysL : 178 !||| !! !!:!!|||:!!! ! !.! ! !:!!:!||||||:!! !!:!!:!!:!! ! rArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrL 5064 : GCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACT : 5126 179 : ysLeuTyrAlaPheAspCysLeuCysIlePheValIleValProAlaAlaLeuAlaValAsp : 198 !:!! !.! ! ! !||| :!: ! :!!:!!:!! !!!.! !! !||| !||| euIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAsp 5127 : TGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGAT : 5186 199 : ThrMetTyrValAlaCysThrGluHisCysLeuGlyLeuPheAlaIle : 214 .!!! |||||| !..!..!:!!|||..!! !||||||!!.|||||| AlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 5187 : GCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 5236 vulgar: NvOr141 136 214 . LHQN01025741.1 5002 5236 + 122 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5003 5236 122 + . gene_id 1 ; sequence NvOr141 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5003 5236 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5003 5236 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5003 5236 122 + . alignment_id 1 ; Query NvOr141 ; Align 5003 137 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr141 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 325 -> 390 Target range: 2536 -> 2970 326 : GluGlyLeuPheArgAspAlaTyrAsnAsnGlnTrpTyrGluGlySerAlaLysSerLysTh : 346 :!!! !|||||| ! ! !|||!:! :!!||||||.!..!!||| !!!:!!!!:!!|| GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGlnTh 2537 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAAAC : 2597 347 : rLeuLeuLysIleLeuThrLeuArgCysValGluProCysLeuIleThrAlaGlyGlyLeuV : 367 ||||! ! !:!! ! ! !||| !!:!! ||| |||:!!|||||||||||||||: rLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGlyLeuI 2598 : TCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGA : 2660 368 : alThrMetAsnPheAlaThrTyrLeuThr >>>> Target Intron 1 >>>> IleM : 378 !!:!!:!!|||!!.! !|||!:! ! ! 239 bp |||: leSerLeuAsnLeuGluThrPheAlaGlu++ ++IleL 2661 : TTTCCTTGAATTTGGAGACTTTTGCCGAGgt.........................agaTCT : 2932 379 : etLysLysSerValSerPheIleThrValPheSerSer : 390 !:||| !||||||||||||...||||||.!.!.!||| euLysAlaSerValSerPhePheThrValMetLysSer 2933 : TAAAAGCAtccgtttcctttttcacgGTAATGAAATCG : 2970 vulgar: NvOr141 325 390 . LHQN01025741.1 2536 2970 + 115 M 51 153 5 0 2 I 0 235 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 2537 2970 115 + . gene_id 2 ; sequence NvOr141 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 2537 2689 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2537 2689 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 2690 2691 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 2690 2928 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 2927 2928 . + . intron_id 0 ; splice_site "ag" LHQN01025741.1 exonerate:protein2genome:local cds 2929 2970 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2929 2970 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 2537 2970 115 + . alignment_id 2 ; Query NvOr141 ; Align 2537 326 153 ; Align 2929 377 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr137 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 128 -> 216 Target range: 4975 -> 5236 129 : ThrMetTyrIleIleAlaAlaPheCysSerTyrValPheLeuProIleValProValLeuLe : 149 |||:!!:!!||| !..! !..! !!:!:!!! !||||||.!!||| !! !:!!|| ThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLe 4976 : ACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCT : 5036 150 : uAspValPheAsnProLeuAsnGlnThrArgSerArgPheTyrIleLeuGlyGlyGluTyrP : 170 ||||:!!.!!! |||||||||:!!||||||:!!|||!!.!:!:!!! ! !!.! ! |||| uAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrP 5037 : GGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATT : 5099 171 : heIleIleAsnAsnValGluAspTyrGlyLysValTyrAlaPheAspCysLeuAlaValIle : 190 ||:!! !.!.:!! ! ! !!||| !:!! !.! ! ! !|||!.!|||:!! heValAspGluAspLysTyrHisTyr---LeuIleValGlyHisMetTyrLeuValValVal 5100 : TCGTCGACGAGGACAAATATCATTAC---TTGATCGTAGGGCATATGTATCTTGTAGTGGTA : 5156 191 : ValThrValTrpLeuIleSerAlaValAspSerMetTyrAlaAlaSerIleGluHisCysLe : 211 :!! !:!!! :!!.!!!!!||| !|||:!!! |||!.! !:!!:!::!!|||..!! MetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCy 5157 : ATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTG : 5219 212 : uGlyLeuPheAlaIle : 216 !||||||!!.|||||| sGlyLeuLeuAlaIle 5220 : CGGATTGTTGGCCATT : 5236 vulgar: NvOr137 128 216 . LHQN01025741.1 4975 5236 + 115 M 50 150 G 1 0 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4976 5236 115 + . gene_id 1 ; sequence NvOr137 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4976 5236 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4976 5236 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 4976 5236 115 + . alignment_id 1 ; Query NvOr137 ; Align 4976 129 150 ; Align 5126 180 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr139 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 129 -> 216 Target range: 5684 -> 5426 130 : MetTyrIleValIleAlaAlaSerAlaTyrSerLeuLeuProMetAlaProValLeuLeuAs : 150 :!!:!!||| !:!!..!|||:!! !!:!! !! !||||||.!.!.! !! !:!!||||| ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAs 5684 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGA : 5624 151 : pMetIleAspProLeuAsnGluThrArgProArgLeuTyrIleLeuGlyGlyGluTyrPheI : 171 |!!::!! |||||||||||||||||| !!||||||!:!:!!! ! !!.! ! ||||||: pIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheV 5623 : CATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCG : 5561 172 : leValAspAsnValGluAspTyrGlyLysValTyrAlaPheGluLeuValProAlaAlaVal : 191 !!! !!!::!! ! ! !||| !! ||| !.!. ! |||||| !.!!.!:!! alAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuVal---ValValMet 5560 : TCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTA---GTGGTAATG : 5504 192 : ThrValTrpLeuIleCysAlaValAspSerMetTyrAlaAlaSerIleGluHisCysLeuGl : 212 !:!!! :!!.!!|||||| !|||:!!! |||!.! !:!!:!::!!|||..!! !|| LeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGl 5503 : CTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGG : 5441 213 : yLeuLeuAlaIle : 216 ||||||||||||| yLeuLeuAlaIle 5440 : ATTGTTGGCCATT : 5427 vulgar: NvOr139 129 216 . LHQN01028732.1 5684 5426 - 128 M 58 174 G 1 0 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5427 5684 128 - . gene_id 1 ; sequence NvOr139 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5427 5684 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5427 5684 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5427 5684 128 - . alignment_id 1 ; Query NvOr139 ; Align 5685 130 174 ; Align 5511 189 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr132 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 128 -> 214 Target range: 5684 -> 5426 129 : MetTyrMetMetThrAlaLeuIleValPheIleLeuLeuProMetTyrProIleMetThrAs : 149 :!!:!!!!: ! !..! ! !:!!|||!!:! !||||||.!. !! !!: !|| ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAs 5684 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGA : 5624 150 : pValIleValProLeuAspHisProArgAlaArgMetPheIleLeuAsnGlyAspTyrLeuV : 170 |:!!:!!:!!||||||:!!.!. !!|||||||||:!!|||:!!! ! !.! !!|||!!!| pIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheV 5623 : CATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCG : 5561 171 : alAspArgAspGluTyrTyrPheGlnIleTyrValPheGluSerThrSerAlaAlaLeuThr : 190 |||||..!|||:!!||| !!:! !||| ! ! ! !! ! ! !!.!!.!:!! ! alAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeu 5560 : TCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTT : 5501 191 : ValPheIleLeuCysSerThrAspProMetTyrAlaAlaIleValGluHisCysLeuGlyLe : 211 :!!! !:!!!!!|||:!! !||| !!! |||!.! ! !|||:!!|||..!! !||||| IleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLe 5500 : ATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATT : 5438 212 : uPheCysIle : 214 |!!...!||| uLeuAlaIle 5437 : GTTGGCCATT : 5427 vulgar: NvOr132 128 214 . LHQN01028732.1 5684 5426 - 125 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5427 5684 125 - . gene_id 1 ; sequence NvOr132 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5427 5684 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5427 5684 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5427 5684 125 - . alignment_id 1 ; Query NvOr132 ; Align 5685 129 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr141 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 136 -> 214 Target range: 5660 -> 5426 137 : ValTyrThrThrMetProLeuMetProPheLeuLeuAspIleIleLeuProLeuAsnGluSe : 157 :!!!:!! ! !:!!|||!!!:!! !! :!!|||||||||:!!:!!||||||||||||!! LeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluTh 5660 : CTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGAC : 5600 158 : rArgProSerMetPheIleLeuAsnGlyGlnPheTyrValAspLysHisGluHisTyrLysL : 178 !||| !! !!:!!|||:!!! ! !.! ! !:!!:!||||||:!! !!:!!:!! ! ! rArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrL 5599 : GCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACT : 5537 179 : ysLeuTyrAlaPheAspCysLeuCysIlePheValIleValProAlaAlaLeuAlaValAsp : 198 !:!! !.! ! ! !||| :!: ! :!!:!!:!! !!!.! !! !||| !||| euIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAsp 5536 : TGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGAT : 5477 199 : ThrMetTyrValAlaCysThrGluHisCysLeuGlyLeuPheAlaIle : 214 .!!! |||||| !..!..!:!!|||..!! !||||||!!.|||||| AlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 5476 : GCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 5427 vulgar: NvOr141 136 214 . LHQN01028732.1 5660 5426 - 118 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5427 5660 118 - . gene_id 1 ; sequence NvOr141 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5427 5660 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5427 5660 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5427 5660 118 - . alignment_id 1 ; Query NvOr141 ; Align 5661 137 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr141 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 332 -> 390 Target range: 7764 -> 7511 333 : TyrAsnAsnGlnTrpTyrGluGlySerAlaLysSerLysThrLeuLeuLysIleLeuThrLe : 353 |||!:! ! !||||||.!.|||!!! !!||| !:!!.!!|||! ! !:!! ! ! TyrSerAlaThrTrpTyrAsnGlyThrProLysValGlnAlaLeuTyrValLeuAlaLeuAr 7764 : TACAGCGCTACATGGTACAACGGTACACCGAAAGTGCAAGCTTTATACGTGCTAGCTTTGAG : 7704 354 : uArgCysValGluProCysLeuIleThrAlaGlyGlyLeuValThrMetAsnPheAlaThrT : 374 !||| !:!! ||| |||||||||||||||||||||:!!:!!:!!|||!!.! !|||! gArgAsnLeuThrProProLeuIleThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrP 7703 : AAGGAACTTGACTCCACCGCTGATTACTGCCGGAGGACTGATCTCCTTGAATTTGGAGACTT : 7641 375 : yrLeuThr >>>> Target Intron 1 >>>> IleMetLysLysSerValSerPheI : 385 :! ! ! 79 bp |||:!:||| !||||||||||||. heAlaGlu++ ++IleLeuLysGlySerValSerPheP 7640 : TCGCGGAGgt.........................agATATTAAAAGGGtccgtttcctttt : 7529 386 : leThrValPheSerSer : 390 ..||||||.!.!.!||| heThrValMetLysSer 7528 : tcacgGTCATGAAATCG : 7512 vulgar: NvOr141 332 390 . LHQN01028732.1 7764 7511 - 108 M 44 132 5 0 2 I 0 75 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 7512 7764 108 - . gene_id 2 ; sequence NvOr141 ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 7633 7764 . - . LHQN01028732.1 exonerate:protein2genome:local exon 7633 7764 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 7631 7632 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 7554 7632 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 7554 7555 . - . intron_id 0 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 7512 7553 . - . LHQN01028732.1 exonerate:protein2genome:local exon 7512 7553 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 7512 7764 108 - . alignment_id 2 ; Query NvOr141 ; Align 7765 333 132 ; Align 7554 377 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr137 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 129 -> 216 Target range: 5684 -> 5426 130 : MetTyrIleIleAlaAlaPheCysSerTyrValPheLeuProIleValProValLeuLeuAs : 150 :!!:!!||| !..! !..! !!:!:!!! !||||||.!!||| !! !:!!||||| ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAs 5684 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGA : 5624 151 : pValPheAsnProLeuAsnGlnThrArgSerArgPheTyrIleLeuGlyGlyGluTyrPheI : 171 |:!!.!!! |||||||||:!!||||||:!!|||!!.!:!:!!! ! !!.! ! ||||||: pIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheV 5623 : CATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCG : 5561 172 : leIleAsnAsnValGluAspTyrGlyLysValTyrAlaPheAspCysLeuAlaValIleVal : 191 !! !.!.:!! ! ! !||| !:!! !.! ! ! !|||!.!|||:!!:!! alAspGluAspLysTyrArgTyr---LeuIleValGlyHisMetTyrLeuValValValMet 5560 : TCGACGAGGACAAATATCGTTAC---TTGATCGTAGGGCATATGTATCTTGTAGTGGTAATG : 5504 192 : ThrValTrpLeuIleSerAlaValAspSerMetTyrAlaAlaSerIleGluHisCysLeuGl : 212 !:!!! :!!.!!!!!||| !|||:!!! |||!.! !:!!:!::!!|||..!! !|| LeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGl 5503 : CTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGG : 5441 213 : yLeuPheAlaIle : 216 ||||!!.|||||| yLeuLeuAlaIle 5440 : ATTGTTGGCCATT : 5427 vulgar: NvOr137 129 216 . LHQN01028732.1 5684 5426 - 109 M 49 147 G 1 0 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5427 5684 109 - . gene_id 1 ; sequence NvOr137 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5427 5684 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5427 5684 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5427 5684 109 - . alignment_id 1 ; Query NvOr137 ; Align 5685 130 147 ; Align 5538 180 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr152PSE Target: KQ414588.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold11, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 163 -> 245 Target range: 776384 -> 776691 164 : LeuAlaLeuPheValIleGlySerLeuValHisPheLeuPheIleSerTrpProGlyG : 183 |||..! !|||:!!!!: !..!||||||||| ! |||!:!:!!!!! ||||||| LeuCysThrPheIleMetIleGlnLeuValHisValLeuTyrLeuThrLeuProGlyG 776385 : TTGTGCACATTTATCATGATTCAATTGGTACACGTACTTTATCTAACTCTTCCAGGAC : 776442 184 : lnLeuValIleAspHisSerAsnAspLeuPheValSer{Va} >>>> Target In : 196 ||!!!||||||||| !:!.!.!!::!!! !! !|||{:!} 61 b lnPheValIleAspAlaAsnGluGluIleSerGluSer{Il}++ 776443 : AATTCGTGATCGACGCGAACGAGGAAATCTCCGAATCG{AT}gt.............. : 776485 197 : tron 1 >>>> {l}TyrAlaAsnGluTrpTyrValIleSerAlaArgAlaLysThr : 210 p {!}|||::! ! !|||||| !! !..! !|||.!!:!!:!! ++{e}TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSer 776486 : ...........ag{A}TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCG : 776584 211 : LeuLeuLysIleValMetLeuArgCysIleLysProCysIleLeuThrAlaGlyGlyL : 230 |||!!! !:!!!.!:!: !!.!|||:!!... !! ! !:!!||||||||||||| LeuPheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyL 776585 : TTGTTTGTATTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGAC : 776644 231 : euTyrValMetSerLeuGluAsnPheGlyValIleLeuLysSerAla : 245 || !..!|||!:!|||:!!!:!|||..!! !:!! !:::|||:!! euIleThrMetAsnLeuGlnSerPheSerGluValThrArgSerSer 776645 : TAATTACAATGAACTTGCAAAGTTTCTCAGAGGTAACACGTTCATCG : 776691 vulgar: NvOr152PSE 163 245 . KQ414588.1 776384 776691 + 141 M 32 96 S 0 2 5 0 2 I 0 57 3 0 2 S 1 1 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414588.1 exonerate:protein2genome:local gene 776385 776691 141 + . gene_id 1 ; sequence NvOr152PSE ; gene_orientation + KQ414588.1 exonerate:protein2genome:local cds 776385 776482 . + . KQ414588.1 exonerate:protein2genome:local exon 776385 776482 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local splice5 776483 776484 . + . intron_id 1 ; splice_site "GT" KQ414588.1 exonerate:protein2genome:local intron 776483 776543 . + . intron_id 1 KQ414588.1 exonerate:protein2genome:local splice3 776542 776543 . + . intron_id 0 ; splice_site "AG" KQ414588.1 exonerate:protein2genome:local cds 776544 776691 . + . KQ414588.1 exonerate:protein2genome:local exon 776544 776691 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local similarity 776385 776691 141 + . alignment_id 1 ; Query NvOr152PSE ; Align 776385 164 96 ; Align 776545 197 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr150CTE Target: KQ414588.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold11, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 306 -> 373 Target range: 776408 -> 776670 307 : MetIleHisLeuLeuTyrLeuSerTyrProGlyGlnLysValLeuAspTyrSerSerS : 326 :!!:!!|||:!!|||||||||!!! !||||||||| |||:!!||| !:!..!. LeuValHisValLeuTyrLeuThrLeuProGlyGlnPheValIleAspAlaAsnGluG 776409 : TTGGTACACGTACTTTATCTAACTCTTCCAGGACAATTCGTGATCGACGCGAACGAGG : 776466 327 : erIleCysGlnGlu{Se} >>>> Target Intron 1 >>>> {r}TyrThrAs : 334 .!|||! !:!!..!{! } 61 bp {!}|||!:! luIleSerGluSer{Il}++ ++{e}TyrSerAl 776467 : AAATCTCCGAATCG{AT}gt.........................ag{A}TACAGCGC : 776551 335 : nGluTrpTyrLeuIleSerLysLysSerLysIleLeuLeuLysPheMetMetLeuArg : 353 ! !|||||| !! !..!|||!:!!!!:!! |||!!! !!!. !:!: !!.! aLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeuArgAsn 776552 : TTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGTTAAGAAAT : 776608 354 : CysIleLysProSerValLeuThrAlaGlyGlyLeuTyrIleMetAsnTyrGluAsnT : 373 |||:!!... !! !! !:!!||||||||||||||| !! !||||||! :!!!:!! CysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGlnSerP 776609 : TGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAAAGTT : 776668 374 : yr : 373 :! he 776669 : TC : 776670 vulgar: NvOr150CTE 306 373 . KQ414588.1 776408 776670 + 119 M 24 72 S 0 2 5 0 2 I 0 57 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414588.1 exonerate:protein2genome:local gene 776409 776670 119 + . gene_id 1 ; sequence NvOr150CTE ; gene_orientation + KQ414588.1 exonerate:protein2genome:local cds 776409 776482 . + . KQ414588.1 exonerate:protein2genome:local exon 776409 776482 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local splice5 776483 776484 . + . intron_id 1 ; splice_site "GT" KQ414588.1 exonerate:protein2genome:local intron 776483 776543 . + . intron_id 1 KQ414588.1 exonerate:protein2genome:local splice3 776542 776543 . + . intron_id 0 ; splice_site "AG" KQ414588.1 exonerate:protein2genome:local cds 776544 776670 . + . KQ414588.1 exonerate:protein2genome:local exon 776544 776670 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local similarity 776409 776670 119 + . alignment_id 1 ; Query NvOr150CTE ; Align 776409 307 72 ; Align 776545 332 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr147 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 329 -> 380 Target range: 3161007 -> 3161160 330 : AspLeuPheAlaAlaIleTyrAlaThrGluTrpTyrAsnValSerGluArgSerLy : 348 !!::!!! !! !.!!:!!!:!! !!:!.!.||| :!!|||:!!!!!!!!|| GluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSerThrLy 3161008 : GAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAGCACCAA : 3161062 349 : sLysLeuLeuSerIleIleMetLeuArgSerLeuLysProCysValPheThrAlaG : 367 |||| !||| !! |||||||||||||||||||||||| ! !||||||!.!! sLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheThrGlyA 3161063 : AAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCACCGGCG : 3161119 368 : lyGlyLeuTyrValMetAsnLeuGluAsnPheGlySerIle : 380 .! !:!!!:! !:!:|||||||||::!||| !|||:!! laPheValPheProValAsnLeuGluSerPheLysSerVal 3161120 : CTTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAAAGTGTT : 3161160 vulgar: NvOr147 329 380 . KQ414646.1 3161007 3161160 + 103 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3161008 3161160 103 + . gene_id 1 ; sequence NvOr147 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3161008 3161160 . + . KQ414646.1 exonerate:protein2genome:local exon 3161008 3161160 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3161008 3161160 103 + . alignment_id 1 ; Query NvOr147 ; Align 3161008 330 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr147 Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 329 -> 380 Target range: 3175218 -> 3175371 330 : AspLeuPheAlaAlaIleTyrAlaThrGluTrpTyrAsnValSerGluArgSerLy : 348 !!::!!! !! !.!!:!!!:!! !!:!.!.||| :!!|||:!!!!!!!!|| GluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSerThrLy 3175219 : GAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAGCACCAA : 3175273 349 : sLysLeuLeuSerIleIleMetLeuArgSerLeuLysProCysValPheThrAlaG : 367 |||| !||| !! |||||||||||||||||||||||| ! !||||||!.!! sLysThrLeuLeuThrIleMetLeuArgSerLeuLysProIleGluPheThrGlyA 3175274 : AAAGACACTCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCACCGGCG : 3175330 368 : lyGlyLeuTyrValMetAsnLeuGluAsnPheGlySerIle : 380 .! !:!!!:! !:!:|||||||||::!||| !|||:!! laPheValPheProValAsnLeuGluSerPheLysSerVal 3175331 : CTTTCGTTTTCCCCGTAAATTTGGAGTCTTTTAAAAGTGTT : 3175371 vulgar: NvOr147 329 380 . KQ414646.1 3175218 3175371 + 103 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3175219 3175371 103 + . gene_id 2 ; sequence NvOr147 ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3175219 3175371 . + . KQ414646.1 exonerate:protein2genome:local exon 3175219 3175371 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3175219 3175371 103 + . alignment_id 2 ; Query NvOr147 ; Align 3175219 330 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr157 Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 127 -> 215 Target range: 891603 -> 891867 128 : LeuMetLeuLeuAsnValIleLeuValGlyTyrLeuLeuValProPheThrProMetL : 147 ||| ! !:!! !!:!!! !|||:!! !|||||||||:!!||| !! ! !!:!:: LeuAlaTyrValTyrMetThrLeuLeuIleTyrLeuLeuLeuProProMetSerLeuI 891604 : TTAGCATACGTTTATATGACACTTTTAATCTACTTACTATTACCGCCCATGTCATTAA : 891661 148 : euLeuAspLeuIleAspProLeuAsnGluThrArgProLysAlaPheProTyrPheAl : 166 !!:!!||| !:!! !!! !||| ! :!!!:! !::! !||| !!:! leIleAspAspValIleSerSerAsnTyrSerGlnGluArgAsnPheLeuPheGluLe 891662 : TAATTGATGACGTTATATCCTCAAATTATTCGCAAGAGCGAAACTTTTTATTCGAACT : 891718 167 : aGluTyrPheIleAspAsnGlnLysTyrTyrPheGluLeuThrValHisGlyTrpIle : 185 !!!:||| !:!:|||!::|||:::|||:::::: :::::::!!|||..!!::!!: uAspTyrGlyValAspSerGlnGlnTyrPheTyrTyrIleSerIleHisSerTyrMet 891719 : CGACTATGGCGTGGACAGccaacaatatttttattatatatccATTCATTCGTACATG : 891775 186 : IleCysIleLeuSerValGlnIleTyrGlyThrPheAspAlaThrTyrThrGlnLeuV : 205 ! ! !:!! !!.!.!.:!! !!.!|||! !|||.!!||||||! ! !! ! GlyThrAlaValValAlaAsnLeuIleAlaThrCysAspThrThrTyrMetLeuTyrS 891776 : GGAACTGCTGTAGTTGCCAATTTAATTGCTACTTGCGATACTACCTACATGTTGTACT : 891835 206 : alGlnHisSerCysAlaLeuPheAlaIleVal : 215 !||||||:!!! !|||||||||||||||||| erGlnHisAlaTyrAlaLeuPheAlaIleVal 891836 : CTCAACATGCTTATGCTTTGTTTGCAATTGTA : 891867 vulgar: NvOr157 127 215 . KQ414735.1 891603 891867 + 128 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 891604 891867 128 + . gene_id 1 ; sequence NvOr157 ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 891604 891867 . + . KQ414735.1 exonerate:protein2genome:local exon 891604 891867 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 891604 891867 128 + . alignment_id 1 ; Query NvOr157 ; Align 891604 128 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr157 Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 154 -> 214 Target range: 887588 -> 887768 155 : AsnGluThrArgProLysAlaPheProTyrPheAlaGluTyrPheIleAspAsnGlnL : 174 |||..!|||..!|||!:! ! !! !||| !.!|||||| !||||||::::::| AsnArgThrGluProArgGlnThrLeuTyrProValGluTyrHisIleAspSerGluL 887589 : AACCGGACCGAACCCAGACAGACTCTATACCCAGTGGAGTACCACATCgacagtgaaa : 887646 175 : ysTyrTyrPheGluLeuThrValHisGlyTrpIleIleCysIleLeuSerValGlnIl : 193 |||||:::::: :!!|||!.!||| !!!:: ! :!!||| !:!!! ysTyrPheTyrLeuIleThrAlaHisCysTyrAlaSerThrValLeuLeuLeuLeuGl 887647 : aatatttttacctgATTACAGCTCATTGTTACGCCTCGACAGTACTTCTTCTGCTTCA : 887703 194 : eTyrGlyThrPheAspAlaThrTyrThrGlnLeuValGlnHisSerCysAlaLeuPhe : 212 ! !! !..! !|||.!!! !|||! ! ||||||||||||.!!|||||||||||| nThrValValHisAspThrMetTyrIleValLeuValGlnHisGlyCysAlaLeuPhe 887704 : AACTGTCGTACACGACACAATGTACATTGTTCTGGTCCAACATGGCTGCGCTTTATTC : 887760 213 : AlaIle : 214 |||:!! AlaVal 887761 : GCAGTT : 887768 vulgar: NvOr157 154 214 . KQ414735.1 887588 887768 + 121 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 887589 887768 121 + . gene_id 2 ; sequence NvOr157 ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 887589 887768 . + . KQ414735.1 exonerate:protein2genome:local exon 887589 887768 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 887589 887768 121 + . alignment_id 2 ; Query NvOr157 ; Align 887589 155 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr155INT Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 127 -> 215 Target range: 891603 -> 891867 128 : LeuIleSerIleAsnIleIleLeuValGlyTyrIleThrLeuProLeuAlaProMetL : 147 ||| !! !:!! !!!!:! !|||:!! !|||:!! !||||||! ! ! !!:!:: LeuAlaTyrValTyrMetThrLeuLeuIleTyrLeuLeuLeuProProMetSerLeuI 891604 : TTAGCATACGTTTATATGACACTTTTAATCTACTTACTATTACCGCCCATGTCATTAA : 891661 148 : euLeuAspIleIleAspProLeuAsnGluThrArgProLysAlaPheProTyrPheAl : 166 !!:!!||| !:!! !!! !||| ! :!!!:! !::! !||| !!:! leIleAspAspValIleSerSerAsnTyrSerGlnGluArgAsnPheLeuPheGluLe 891662 : TAATTGATGACGTTATATCCTCAAATTATTCGCAAGAGCGAAACTTTTTATTCGAACT : 891718 167 : aGluTyrPheIleAspAspGlnLysTyrTyrPheGluLeuThrValHisGlyTrpIle : 185 !!!:||| !:!:|||...|||:::|||:::::: :::::::!!|||..!!::!!: uAspTyrGlyValAspSerGlnGlnTyrPheTyrTyrIleSerIleHisSerTyrMet 891719 : CGACTATGGCGTGGACAGccaacaatatttttattatatatccATTCATTCGTACATG : 891775 186 : ValCysIleLeuSerValGlnIleTyrGlyThrPheAspAlaThrTyrThrGlnLeuV : 205 ! ! ! !:!! !!.!.!.:!! !!.!|||! !|||.!!||||||! ! !! ! GlyThrAlaValValAlaAsnLeuIleAlaThrCysAspThrThrTyrMetLeuTyrS 891776 : GGAACTGCTGTAGTTGCCAATTTAATTGCTACTTGCGATACTACCTACATGTTGTACT : 891835 206 : alGlnHisSerCysAlaLeuPheAlaIleVal : 215 !||||||:!!! !|||||||||||||||||| erGlnHisAlaTyrAlaLeuPheAlaIleVal 891836 : CTCAACATGCTTATGCTTTGTTTGCAATTGTA : 891867 vulgar: NvOr155INT 127 215 . KQ414735.1 891603 891867 + 127 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 891604 891867 127 + . gene_id 1 ; sequence NvOr155INT ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 891604 891867 . + . KQ414735.1 exonerate:protein2genome:local exon 891604 891867 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 891604 891867 127 + . alignment_id 1 ; Query NvOr155INT ; Align 891604 128 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr155INT Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 127 -> 214 Target range: 887510 -> 887768 128 : LeuIleSerIleAsnIleIleLeuValGlyTyrIleThrLeuProLeuAlaProMetL : 147 :!!:!!! !:!! !||| !..! !|||.!!|||||| !!:!!||| !:!:: IleValTyrValCysIleSerAlaThrMetTyrPheThrLeuSerIleAlaValValI 887511 : ATAGTTTACGTCTGCATATCGGCGACAATGTATTTCACACTTTCGATTGCCGTGGTCA : 887568 148 : euLeuAspIleIleAspProLeuAsnGluThrArgProLysAlaPheProTyrPheAl : 166 !!!!!!!: !:!::!! ! |||..!|||..!|||!:! ! !! !||| !. lePheGluGluLeuAsnLys---AsnArgThrGluProArgGlnThrLeuTyrProVa 887569 : TCTTCGAGGAATTGAATAAA---AACCGGACCGAACCCAGACAGACTCTATACCCAGT : 887622 167 : aGluTyrPheIleAspAspGlnLysTyrTyrPheGluLeuThrValHisGlyTrpIle : 185 !|||||| !||||||...:::||||||:::::: :!!|||!.!||| !!!:: ! lGluTyrHisIleAspSerGluLysTyrPheTyrLeuIleThrAlaHisCysTyrAla 887623 : GGAGTACCACATCgacagtgaaaaatatttttacctgATTACAGCTCATTGTTACGCC : 887679 186 : ValCysIleLeuSerValGlnIleTyrGlyThrPheAspAlaThrTyrThrGlnLeuV : 205 ! :!!||| !:!!! ! !! !..! !|||.!!! !|||! ! |||| SerThrValLeuLeuLeuLeuGlnThrValValHisAspThrMetTyrIleValLeuV 887680 : TCGACAGTACTTCTTCTGCTTCAAACTGTCGTACACGACACAATGTACATTGTTCTGG : 887739 206 : alGlnHisSerCysAlaLeuPheAlaIle : 214 ||||||||.!!|||||||||||||||:!! alGlnHisGlyCysAlaLeuPheAlaVal 887740 : TCCAACATGGCTGCGCTTTATTCGCAGTT : 887768 vulgar: NvOr155INT 127 214 . KQ414735.1 887510 887768 + 126 M 26 78 G 1 0 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 887511 887768 126 + . gene_id 2 ; sequence NvOr155INT ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 887511 887768 . + . KQ414735.1 exonerate:protein2genome:local exon 887511 887768 . + . insertions 0 ; deletions 1 KQ414735.1 exonerate:protein2genome:local similarity 887511 887768 126 + . alignment_id 2 ; Query NvOr155INT ; Align 887511 128 78 ; Align 887589 155 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr161 Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 128 -> 217 Target range: 891606 -> 891870 129 : GlyTyrMetIleIleGlyIleAlaIlePheLeuSerLeuProIleSerAlaProLeuT : 148 !.!|||:!: !!!: !:!! !|||!:!||| !|||||| !! !:!! !:!! AlaTyrValTyrMetThrLeuLeuIleTyrLeuLeuLeuProProMetSerLeuIleI 891607 : GCATACGTTTATATGACACTTTTAATCTACTTACTATTACCGCCCATGTCATTAATAA : 891664 149 : rpAspTyrIleValProLeuGluAsnAlaThrArgProAsnAlaLeuProTyrTyrAl : 167 ||| !!:!!:!! !!! !.!. !!:!! !..!! !||| !||| !:! ! leAspAspValIleSerSerAsnTyrSerGlnGluArgAsnPheLeu---PheGluLe 891665 : TTGATGACGTTATATCCTCAAATTATTCGCAAGAGCGAAACTTTTTA---TTCGAACT : 891718 168 : aGluTyrGlyValAspGlnGluLysTyrTyrPheProLeuMetGlyGlnAlaValPhe : 186 !!!:||||||||||||...::::::|||:::::: ::: !!!.:!! !.!. uAspTyrGlyValAspSerGlnGlnTyrPheTyrTyrIleSerIleHisSerTyrMet 891719 : CGACTATGGCGTGGACAGccaacaatatttttattatatatccATTCATTCGTACATG : 891775 187 : GlyGlyIleGlyThrGlyMetLeuLeuValThrPheAspLeuGlyPheIleLeuThrV : 206 ||| ! !! !..!!.!! |||:!!!.!|||! !||| ! !!:!!!:||| ! GlyThrAlaValValAlaAsnLeuIleAlaThrCysAspThrThrTyrMetLeuTyrS 891776 : GGAACTGCTGTAGTTGCCAATTTAATTGCTACTTGCGATACTACCTACATGTTGTACT : 891835 207 : alGlnHisValValAlaLeuPheAlaLeuValTrp : 217 !||||||!.! !||||||||||||:!!|||||| erGlnHisAlaTyrAlaLeuPheAlaIleValTrp 891836 : CTCAACATGCTTATGCTTTGTTTGCAATTGTATGG : 891870 vulgar: NvOr161 128 217 . KQ414735.1 891606 891870 + 108 M 35 105 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 891607 891870 108 + . gene_id 1 ; sequence NvOr161 ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 891607 891870 . + . KQ414735.1 exonerate:protein2genome:local exon 891607 891870 . + . insertions 0 ; deletions 1 KQ414735.1 exonerate:protein2genome:local similarity 891607 891870 108 + . alignment_id 1 ; Query NvOr161 ; Align 891607 129 105 ; Align 891712 165 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr162 Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 165 -> 228 Target range: 887579 -> 887768 166 : LeuProLeuAsnGluThrArgGlnLysArgIleProAlaProAlaGluTyrPheValA : 185 ||| ! !|||..!|||..!! !:!!:!! !! ! !|||!.!|||||| !:!!| LeuAsnLysAsnArgThrGluProArgGlnThrLeuTyrProValGluTyrHisIleA 887580 : TTGAATAAAAACCGGACCGAACCCAGACAGACTCTATACCCAGTGGAGTACCACATCg : 887637 186 : spGluGluLysTyrPheTyrIleLeuPheSerHisGlyMetIleLeuTyrMetLeuVa : 204 ||...|||||||||||||||::::!! :!!||| !! !! ! :!:|||:! spSerGluLysTyrPheTyrLeuIleThrAlaHisCysTyrAlaSerThrValLeuLe 887638 : acagtgaaaaatatttttacctgATTACAGCTCATTGTTACGCCTCGACAGTACTTCT : 887694 205 : lCysValLeuTyrValThrIleAspSerMetTyrSerCysIleValHisHisThrVal : 223 ! :!!! ! !|||..! !|||!!!||||||! ! !:!:|||!!.||| ! ! uLeuLeuGlnThrValValHisAspThrMetTyrIleValLeuValGlnHisGlyCys 887695 : TCTGCTTCAAACTGTCGTACACGACACAATGTACATTGTTCTGGTCCAACATGGCTGC : 887751 224 : GlyLeuValGlyIle : 228 !.!||| !!!.!:!! AlaLeuPheAlaVal 887752 : GCTTTATTCGCAGTT : 887768 vulgar: NvOr162 165 228 . KQ414735.1 887579 887768 + 102 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 887580 887768 102 + . gene_id 1 ; sequence NvOr162 ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 887580 887768 . + . KQ414735.1 exonerate:protein2genome:local exon 887580 887768 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 887580 887768 102 + . alignment_id 1 ; Query NvOr162 ; Align 887580 166 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr154 Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 0 -> 52 Target range: 885605 -> 885449 1 : MetAspIleTyrAspSerArgTyrTyrLysThrAsnIlePheTyrLeuLysLeuLeuG : 20 ||||||.!!!:!|||..!! ! !:!..! !|||! ||| ! |||!!!| MetAspPhePheAspGlnProThrPheSerLeuAsnLysPheLeuAlaValLeuPheG 885605 : ATGGATTTTTTCGATCAACCTACGTTTTCGCTAAATAAGTTCCTGGCTGTTTTATTTG : 885548 21 : lyLeuTrpProPheAspAspPheLeuAsnLysArgValArgArgIleLeuIleIleIl : 39 || !|||||||||.!...!.!. !.!.! ! !||||||!.!||||||:!:! !|| lyThrTrpProPheGlnSerIleThrGlnThrValValArgAsnIleLeuValSerIl 885547 : GAACCTGGCCCTTCCAGAGCATAACACAAACAGTCGTGAGAAATATATTAGTGAGCAT : 885491 40 : eAlaValValSerLeuIleIleProGlnValIleArgLeu : 52 |!.!:!!:!!|||:!!|||||||||:!!|||! !!.!||| eGlyIleIleSerIleIleIleProGluValAsnHisLeu 885490 : CGGTATTATTAGTATTATAATACCAGAGGTAAATCATTTA : 885450 vulgar: NvOr154 0 52 . KQ414735.1 885605 885449 - 107 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 885450 885605 107 - . gene_id 1 ; sequence NvOr154 ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 885450 885605 . - . KQ414735.1 exonerate:protein2genome:local exon 885450 885605 . - . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 885450 885605 107 - . alignment_id 1 ; Query NvOr154 ; Align 885606 1 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr155INT Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 164 Query range: 137 -> 214 Target range: 20556 -> 20325 138 : TyrIleThrLeuProLeuAlaProMetLeuLeuAspIleIleAspProLeuAsnGluThr : 157 !:!:!! !:!!|||!!!||||||!!::!!||||||||| !! |||||||||:!!||| PheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsnLysThr 20556 : TTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAACAAAACG : 20499 158 : ArgProLysAlaPheProTyrPheAlaGluTyrPheIleAspAspGlnLysTyrTyrPhe : 177 ||| !:::!.!||| !||| ||| ! |||!::!!:||| !:!!:!!||||||.!. ArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMet 20498 : AGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATG : 20439 178 : GluLeuThrValHisGlyTrpIleValCysIleLeuSerValGlnIleTyrGlyThrPhe : 197 !:!!! !:!!||| ! !.!!||| |||:!! ! ! |||!:! !!.!!! ! IleMetIleIleHisIleMetPheValValIleMetValCysValIlePheCysAlaCys 20438 : ATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGTGCTTGC : 20379 198 : AspAlaThrTyrThrGlnLeuValGlnHisSerCysAlaLeuPheAlaIle : 214 ||| !!.!|||..! ! !|||||||||:!!|||!.!|||!!.|||:!! AspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaVal 20378 : GACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: NvOr155INT 137 214 . KQ414772.1 20556 20325 - 164 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20556 164 - . gene_id 1 ; sequence NvOr155INT ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20556 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20556 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20326 20556 164 - . alignment_id 1 ; Query NvOr155INT ; Align 20557 138 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr155INT Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 137 -> 214 Target range: 18039 -> 17808 138 : TyrIleThrLeuProLeuAlaProMetLeuLeuAspIleIleAspProLeuAsnGluThr : 157 !:!||| !:!!|||! !:!! !! |||:!!:!! ! ! !!! !||| !||| PheIleGlnValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIleThr 18039 : TTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACG : 17982 158 : ArgProLysAlaPheProTyrPheAlaGluTyrPheIleAspAspGlnLysTyrTyrPhe : 177 ! ! ! ! !||| ! !!.! ! ||||||:!!|||!!: !:!!||||||!:! ProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyrTyr 17981 : CCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTAT : 17922 178 : GluLeuThrValHisGlyTrpIleValCysIleLeuSerValGlnIleTyrGlyThrPhe : 197 ! :!!! !:!!|||||| ! !..! !:!::!! !||| !:!:||| !!.!!! ! TyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCys 17921 : TACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 17862 198 : AspAlaThrTyrThrGlnLeuValGlnHisSerCysAlaLeuPheAlaIle : 214 |||.!!!:!|||! ! !||||||||||||!!!|||!.!|||||||||:!: AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaVal 17861 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTG : 17809 vulgar: NvOr155INT 137 214 . KQ414772.1 18039 17808 - 127 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17809 18039 127 - . gene_id 2 ; sequence NvOr155INT ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17809 18039 . - . KQ414772.1 exonerate:protein2genome:local exon 17809 18039 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17809 18039 127 - . alignment_id 2 ; Query NvOr155INT ; Align 18040 138 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr155INT Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 122 -> 177 Target range: 45985 -> 45820 123 : LeuAlaLeuGlyTyrLeuIleSerIleAsnIleIleLeuValGlyTyrIleThrLeuPro : 142 |||:!!:!! ! !! !:!!!!!||| !!||| !:!! !! !!:! !||| !||| LeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThrAlaPro 45985 : TTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCC : 45928 143 : LeuAlaProMetLeuLeuAspIleIleAspProLeuAsnGluThrArgProLysAlaPhe : 162 ||| !|||.!.:!!||||||:!!|||...||||||||||||:!!||||||::: !!:! LeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArgLeuTyr 45927 : CTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTAC : 45868 163 : ProTyrPheAlaGluTyrPheIleAspAspGlnLysTyrTyrPhe : 177 !!||| ||| ! ! !!:!.!!:!! .!. ! ||||||!:! AlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyr 45867 : GCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTAT : 45821 vulgar: NvOr155INT 122 177 . KQ414772.1 45985 45820 - 104 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45821 45985 104 - . gene_id 3 ; sequence NvOr155INT ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45821 45985 . - . KQ414772.1 exonerate:protein2genome:local exon 45821 45985 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45821 45985 104 - . alignment_id 3 ; Query NvOr155INT ; Align 45986 123 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr154 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 162 Query range: 135 -> 214 Target range: 20562 -> 20325 136 : ValIleTyrIleSerLeuProLeuLeuProLeuLeuLeuAspValIleAspProGlnAsn : 155 !.!|||!:!:!!!!!:!!|||!!! !|||:!!:!!||||||:!! !! |||! !||| AlaIlePheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsn 20562 : GCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAAC : 20505 156 : GluThrArgProLysGlnPheProTyrPheAlaGluTyrPheIleAspAspGlnLysTyr : 175 :!!|||||| !::: !||| !||| ||| ! |||!::!!:||| !:!!:!!||| LysThrArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyr 20504 : AAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATAC : 20445 176 : TyrPheGluLeuThrIleHisGlyTrpIleValCysIleLeuSerValGlnIleTyrGly : 195 |||.!. !:!!! !|||||| ! !.!!||| |||:!! ! ! |||!:! !! TyrMetIleMetIleIleHisIleMetPheValValIleMetValCysValIlePheCys 20444 : TACATGATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGT : 20385 196 : ThrPheAspThrThrTyrThrGlnCysValGlnHisAlaCysGlyLeuPheGlyIle : 214 .!!! !|||! !!.!|||..! ! ..!|||||||||||||||||||||!!.!.!:!! AlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaVal 20384 : GCTTGCGACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: NvOr154 135 214 . KQ414772.1 20562 20325 - 162 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20562 162 - . gene_id 1 ; sequence NvOr154 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20562 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20562 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20326 20562 162 - . alignment_id 1 ; Query NvOr154 ; Align 20563 136 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr154 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 154 Query range: 127 -> 220 Target range: 14160 -> 13881 128 : IleIleProIleAsnIleIleLeuValIleTyrIleSerLeuProLeuLeuProLeuLeu : 147 |||:!: ! ! !:!! !:!!:!!:!:!:!:!:!!! !|||:!! !|||! !:!! IleValAsnAlaIleValCysValIleLeuPheValThrThrProValThrProHisIle 14160 : ATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATT : 14103 148 : LeuAspValIleAspProGlnAsnGluThrArgProLysGlnPheProTyrPheAlaGlu : 167 ||||||:!!:!! |||:!!||||||:!!||| ! ! !!:! !||| ||| ! LeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyr 14102 : TTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTAT : 14043 168 : TyrPheIleAspAspGlnLysTyrTyrPheGluLeuThrIleHisGlyTrpIleValCys : 187 ||||||! !|||!!:!!.|||||| !! ! ! :!!! !! ||| ! ! !||| ! TyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIle 14042 : TATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATC : 13983 188 : IleLeuSerValGlnIleTyrGlyThrPheAspThrThrTyrThrGlnCysValGlnHis : 207 :!!:!! ! !! ! :!:|||! !.!!! !||||||!:!|||! ! ! !||||||||| LeuValValPheTyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHis 13982 : CTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACAC : 13923 208 : AlaCysGlyLeuPheGlyIleValGluGlnArgLeuArg : 220 !.!|||||||||!!.!.!:!: !! ::::::||| GlyCysGlyLeuLeuAlaValSerGly***LysIleArg 13922 : GGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaattcga : 13882 vulgar: NvOr154 127 220 . KQ414772.1 14160 13881 - 154 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13882 14160 154 - . gene_id 2 ; sequence NvOr154 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13882 14160 . - . KQ414772.1 exonerate:protein2genome:local exon 13882 14160 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13882 14160 154 - . alignment_id 2 ; Query NvOr154 ; Align 14161 128 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr154 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 152 Query range: 135 -> 214 Target range: 38012 -> 37775 136 : ValIleTyrIleSerLeuProLeuLeuProLeuLeuLeuAspValIleAspProGlnAsn : 155 ||||||!:!! !|||:!! !!:!! !|||! !:!!||||||:!!|||...|||:!!||| ValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 38012 : GTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAAC : 37955 156 : GluThrArgProLysGlnPheProTyrPheAlaGluTyrPheIleAspAspGlnLysTyr : 175 |||:!!||| ! .!.||| !||| !||| ! ||| !:!!|||!!::!!:!!:!! GluSerArgGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHis 37954 : GAATCGCGTGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAGGAACAT : 37895 176 : TyrPheGluLeuThrIleHisGlyTrpIleValCysIleLeuSerValGlnIleTyrGly : 195 |||!:! |||! ! !||| ! !||| ! !:!! ! !! :!:||| ! TyrTyrIleLeuMetGlyHisMetLeuCysValIleThrValValPhePheValTyrIle 37894 : TATTACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTGTACATC : 37835 196 : ThrPheAspThrThrTyrThrGlnCysValGlnHisAlaCysGlyLeuPheGlyIle : 214 :!!! !||||||! !|||! !... !|||||||||||||||||||||.!...!:!! SerCysAspThrIleTyrMetSerIleValGlnHisAlaCysGlyLeuLeuAsnVal 37834 : TCCTGTGACACGATCTACATGAGCATCGTTCAACACGCGTGCGGATTACTGAACGTC : 37776 vulgar: NvOr154 135 214 . KQ414772.1 38012 37775 - 152 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37776 38012 152 - . gene_id 3 ; sequence NvOr154 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37776 38012 . - . KQ414772.1 exonerate:protein2genome:local exon 37776 38012 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 37776 38012 152 - . alignment_id 3 ; Query NvOr154 ; Align 38013 136 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr154 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 150 Query range: 135 -> 214 Target range: 29598 -> 29361 136 : ValIleTyrIleSerLeuProLeuLeuProLeuLeuLeuAspValIleAspProGlnAsn : 155 ||||||!:!! !|||:!! !!:!! !|||! !:!!||||||:!!|||...|||:!!||| ValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 29598 : GTTATATTCACCTCAGTGGCGATAACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAAC : 29541 156 : GluThrArgProLysGlnPheProTyrPheAlaGluTyrPheIleAspAspGlnLysTyr : 175 |||:!!||| ! ! ||| !||| !||| ! ||| !:!!|||!!::!!:!!:!! GluSerArgGlyValGlyPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHis 29540 : GAATCGCGCGGAGTGGGCTTCATTTATCCTGCATACTACGGTCTTGACGAAGAGGAGCAT : 29481 176 : TyrPheGluLeuThrIleHisGlyTrpIleValCysIleLeuSerValGlnIleTyrGly : 195 |||!:! ! |||! ! !||| ! !||| ! !:!! ! !! :!!||| ! TyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIle 29480 : TACTACTATCTGATGGGTCACATGCTTTCCGTGATAACCGTCGTGTTTTTCGTCTACATC : 29421 196 : ThrPheAspThrThrTyrThrGlnCysValGlnHisAlaCysGlyLeuPheGlyIle : 214 :!!! !||||||! !|||! !.!. !|||||||||||||||||||||!!...!:!! SerCysAspThrIleTyrMetAsnValValGlnHisAlaCysGlyLeuLeuAsnVal 29420 : TCCTGTGACACGATCTATATGAATGTCGTGCAACACGCGTGTGGATTATTGAACGTC : 29362 vulgar: NvOr154 135 214 . KQ414772.1 29598 29361 - 150 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29362 29598 150 - . gene_id 4 ; sequence NvOr154 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29362 29598 . - . KQ414772.1 exonerate:protein2genome:local exon 29362 29598 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 29362 29598 150 - . alignment_id 4 ; Query NvOr154 ; Align 29599 136 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr154 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 147 Query range: 135 -> 214 Target range: 24419 -> 24182 136 : ValIleTyrIleSerLeuProLeuLeuProLeuLeuLeuAspValIleAspProGlnAsn : 155 |||:!!!:!! !:!!:!! !!:!! !|||! !:!!||||||:!!|||...|||:!!||| ValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 24419 : GTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAAC : 24362 156 : GluThrArgProLysGlnPheProTyrPheAlaGluTyrPheIleAspAspGlnLysTyr : 175 |||:!!||| ! ! ||| !||| !|||.!.||| !:!!|||!!::!!:!!:!! GluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHis 24361 : GAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCAT : 24302 176 : TyrPheGluLeuThrIleHisGlyTrpIleValCysIleLeuSerValGlnIleTyrGly : 195 |||!:! ! |||! ! !||| ! !||| ! !:!! ! !! :!!||| ! TyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIle 24301 : TACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATC : 24242 196 : ThrPheAspThrThrTyrThrGlnCysValGlnHisAlaCysGlyLeuPheGlyIle : 214 :!!! !||||||! !|||! !.!. !|||||||||||||||||||||!!...!:!! SerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeu 24241 : TCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTC : 24183 vulgar: NvOr154 135 214 . KQ414772.1 24419 24182 - 147 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24183 24419 147 - . gene_id 5 ; sequence NvOr154 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24183 24419 . - . KQ414772.1 exonerate:protein2genome:local exon 24183 24419 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 24183 24419 147 - . alignment_id 5 ; Query NvOr154 ; Align 24420 136 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr154 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 141 Query range: 123 -> 214 Target range: 18087 -> 17808 124 : ThrLeuGlyTyrIleIleProIleAsn<-><->IleIleLeuValIleTyrIleSerLeu : 141 ||||||! ! |||.!!|||:!:||| ||| !! ! !!:!:!:!|||..!:!! ThrLeuAspArgIlePheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnVal 18087 : ACTCTCGATCGGATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTG : 18030 142 : ProLeuLeuProLeuLeuLeuAspValIleAspProGlnAsnGluThrArgProLysGln : 161 |||! !! ! !!! !|||:!!:!! ! ! ! !!|||||| !|||! ! ! !||| ProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuGln 18029 : CCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCAA : 17970 162 : PheProTyrPheAlaGluTyrPheIleAspAspGlnLysTyrTyrPheGluLeuThrIle : 181 ||| ! !!.! ! ||||||:!!|||!!: !:!!||||||!:! ! :!!! !:!! PheValIleProGlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeu 17969 : TTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTT : 17910 182 : HisGlyTrpIleValCysIleLeuSerValGlnIleTyrGlyThrPheAspThrThrTyr : 201 |||||| ! !..! !:!::!! !||| !:!:||| !!.!!! !||||||!:!||| HisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCysAspThrSerTyr 17909 : CACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTAC : 17850 202 : ThrGlnCysValGlnHisAlaCysGlyLeuPheGlyIle : 214 ! ! ! |||||||||.!!||||||||||||!.!:!: MetValLeuValGlnHisThrCysGlyLeuPheAlaVal 17849 : ATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTG : 17809 vulgar: NvOr154 123 214 . KQ414772.1 18087 17808 - 141 M 9 27 G 0 6 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17809 18087 141 - . gene_id 6 ; sequence NvOr154 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17809 18087 . - . KQ414772.1 exonerate:protein2genome:local exon 17809 18087 . - . insertions 6 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17809 18087 141 - . alignment_id 6 ; Query NvOr154 ; Align 18088 124 27 ; Align 18055 133 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr154 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 135 -> 214 Target range: 33655 -> 33418 136 : ValIleTyrIleSerLeuProLeuLeuProLeuLeuLeuAspValIleAspProGlnAsn : 155 :!!!!:!:!! !||| !|||!!!:!!|||! !!!!:!!|||||| !!:!!||| IleMetPheSerSerAlaProPheIleProHisPheIleAspValAlaLeuSerLysAsn 33655 : ATCATGTTCAGCTCGGCGCCTTTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAAC : 33598 156 : GluThrArgProLysGlnPheProTyrPheAlaGluTyrPheIleAspAspGlnLysTyr : 175 |||:!!||| ! !...!!. !||| !||| ! ||| !||||||.!....|||||| GluSerArgLysLeuSerLeuMetTyrProAlaTyrTyrGlyIleAspGlnAspLysTyr 33597 : GAGTCACGAAAATTAAGTTTGATGTACCCTGCCTATTACGGCATTGACCAGGacaagtat : 33538 176 : TyrPheGluLeuThrIleHisGlyTrpIleValCysIleLeuSerValGlnIleTyrGly : 195 |||::: ||| !||| ! !! !!.! ! ! ! ! !! :!!!:! ! TyrTyrTyrLeuMetAlaHisMetMetSerAlaGlyAlaAlaValPhePheValPheMet 33537 : tattattatctaatgGCTCACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATG : 33478 196 : ThrPheAspThrThrTyrThrGlnCysValGlnHisAlaCysGlyLeuPheGlyIle : 214 :!!! !||||||! !|||! !.!. !|||||||||||||||||||||!!. !||| SerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuPheIle 33477 : TCCTGCGACACGATTTATATGAATATCGTTCAACACGCGTGCGGATTGTTGTTCATT : 33419 vulgar: NvOr154 135 214 . KQ414772.1 33655 33418 - 130 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33419 33655 130 - . gene_id 7 ; sequence NvOr154 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33419 33655 . - . KQ414772.1 exonerate:protein2genome:local exon 33419 33655 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 33419 33655 130 - . alignment_id 7 ; Query NvOr154 ; Align 33656 136 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr154 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 134 -> 211 Target range: 42718 -> 42487 135 : LeuValIleTyrIleSerLeuProLeuLeuProLeuLeuLeuAspValIleAspProGln : 154 !!!..!!!:!:!|||||| !|||! !:!!|||! !:!!! !||||||!!: !!:!! PheThrMetPheIleSerAlaProTyrIleProHisValTyrAspValMetLeuSerLys 42718 : TTCACAATGTTTATCTCTGCGCCTTATATACCGCATGTATATGATGTTATGTTATCGAAA : 42661 155 : AsnGluThrArgProLysGlnPheProTyrPheAlaGluTyrPheIleAspAspGlnLys : 174 ||||||:!!||| ! ! ||| !||| !||| ! ||| !:!!|||.!..!.||| AsnGluSerArgLysLeuGlyPheIleTyrProAlaTyrTyrGlyValAspGlnAspLys 42660 : AACGAGTCACGAAAGTTGGGTTTCATTTACCCTGCCTATTATGGCGTTGATCAAGACAAG : 42601 175 : TyrTyrPheGluLeuThrIleHisGlyTrpIleValCysIleLeuSerValGlnIleTyr : 194 ||||||!:! ! :!!! ! !||| ! !! ! !!:!!:!! ! !! ! !!:! TyrTyrTyrTyrIleIleAlaHisMetThrSerGlyGlyLeuValValPhePheThrPhe 42600 : TATTATTACTATATAATAGCTCACATGACATCTGGGGGCTTAGTGGTGTTTTTCACCTTT : 42541 195 : GlyThrPheAspThrThrTyrThrGlnCysValGlnHisAlaCysGlyLeu : 211 !:!!! !||||||! !|||! !.!. !||||||||||||||||||||| IleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeu 42540 : ATCTCCTGCGACACGATTTACATGAATATCGTGCAACACGCGTGCGGATTG : 42488 vulgar: NvOr154 134 211 . KQ414772.1 42718 42487 - 127 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42488 42718 127 - . gene_id 8 ; sequence NvOr154 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42488 42718 . - . KQ414772.1 exonerate:protein2genome:local exon 42488 42718 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42488 42718 127 - . alignment_id 8 ; Query NvOr154 ; Align 42719 135 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr147 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 147 -> 208 Target range: 45940 -> 45757 148 : PheCysGlnIleProMetIleProValPheLeuAspPheIleAsnProLeuAsnGluThr : 167 |||! ! |||:!:|||||| !!.!!||||||.!.|||:::||||||||||||:!! PheSerThrAlaProLeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSer 45940 : TTTTCTACCGCGCCCCTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCT : 45883 168 : ArgProLysIleLeuPheValLysAlaGluPheIlePheAspProTyrLysTyrPheTyr : 187 ||||||::::!:! ! ! !|||||| ! ! ! !|||:!!||| !! ! |||!:!||| ArgProArgLeuTyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyr 45882 : CGTCCACGTTTGTACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTAT : 45823 188 : GlnLeuTyrAlaPhePheIleGlyCysAlaAlaSerAlaValPheIleValCysSerIle : 207 ! :!! !.!!:! !! !!.!||| !!.!! !|||! !.!!:!::!! !.!! ! TyrValValGlyTyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAla 45822 : TACGTCGTGGGGTACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCT : 45763 208 : Asp : 208 ||| Asp 45762 : GAC : 45758 vulgar: NvOr147 147 208 . KQ414772.1 45940 45757 - 117 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45758 45940 117 - . gene_id 1 ; sequence NvOr147 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45758 45940 . - . KQ414772.1 exonerate:protein2genome:local exon 45758 45940 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45758 45940 117 - . alignment_id 1 ; Query NvOr147 ; Align 45941 148 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr147 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 147 -> 226 Target range: 20556 -> 20319 148 : PheCysGlnIleProMetIleProValPheLeuAspPheIleAsnProLeuAsnGluThr : 167 |||! :!:|||.!. !|||:!!.!!||||||.!! ! |||||||||:!!||| PheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsnLysThr 20556 : TTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAACAAAACG : 20499 168 : ArgProLysIleLeuPheValLysAlaGluPheIlePheAspProTyrLysTyrPheTyr : 187 ||| !::::!:!!! !! ! !||| ! !:! .!.|||||| ! :!!|||!:! ArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMet 20498 : AGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATG : 20439 188 : GlnLeuTyrAlaPhePheIleGlyCysAlaAlaSerAlaValPheIleValCysSerIle : 207 !:!! ! !.!.!!: ! !.! !! !!.! ! !!||| !!|||:!! ! IleMetIleIleHisIleMetPheValValIleMetValCysValIlePheCysAlaCys 20438 : ATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGTGCTTGC : 20379 208 : AspThrThrPheThrAlaValValHisGlnIleIleGlyValValSerIleIleLys : 226 |||! !!.!!:!..! !!.!|||!!.!!. ! !|||:!!:!!:!!:!!! !!:! AspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaValThrArg 20378 : GACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTCACCAGG : 20320 vulgar: NvOr147 147 226 . KQ414772.1 20556 20319 - 102 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20320 20556 102 - . gene_id 2 ; sequence NvOr147 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20320 20556 . - . KQ414772.1 exonerate:protein2genome:local exon 20320 20556 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20320 20556 102 - . alignment_id 2 ; Query NvOr147 ; Align 20557 148 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr151 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 324 -> 376 Target range: 37064 -> 36908 325 : LysGluLeuTyrLeuAsnValTyrSerAsnGluTrpTyrAsnLeuThrLysGluAlaLys : 344 :!!||||||!:!:!!..! !|||||| :!!||||||||| !:!! !..!.!!:!! GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 37064 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 37007 345 : ThrLeuLeuLysIleValMetLeuArgCysLeuLysProSerLysPheThrAlaGlyGly : 364 ||||||! ! !:!!!.!:!! !||| !!|||! ||| !! !.!!|||||||||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 37006 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 36947 365 : LeuTyrThrLeuAsnLeuGluSerPheGlyThrIle : 376 ||| !:!!||||||||||||!!!|||!.! ::: LeuIleSerLeuAsnLeuGluThrPheAlaGluVal 36946 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGaggta : 36909 vulgar: NvOr151 324 376 . KQ414772.1 37064 36908 - 116 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 36909 37064 116 - . gene_id 1 ; sequence NvOr151 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 36909 37064 . - . KQ414772.1 exonerate:protein2genome:local exon 36909 37064 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 36909 37064 116 - . alignment_id 1 ; Query NvOr151 ; Align 37065 325 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr151 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 324 -> 376 Target range: 35630 -> 35474 325 : LysGluLeuTyrLeuAsnValTyrSerAsnGluTrpTyrAsnLeuThrLysGluAlaLys : 344 :!!||||||!:!:!!..! !|||||| :!!||||||||| !:!! !..!.!!:!! GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 35630 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 35573 345 : ThrLeuLeuLysIleValMetLeuArgCysLeuLysProSerLysPheThrAlaGlyGly : 364 ||||||! ! !:!!!.!:!! !||| !!|||! ||| !! !.!!|||||||||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 35572 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 35513 365 : LeuTyrThrLeuAsnLeuGluSerPheGlyThrIle : 376 ||| !:!!||||||||||||!!!|||!.! !:!! LeuIleSerLeuAsnLeuGluThrPheAlaGluVal 35512 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGAGGTA : 35475 vulgar: NvOr151 324 376 . KQ414772.1 35630 35474 - 116 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 35475 35630 116 - . gene_id 2 ; sequence NvOr151 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 35475 35630 . - . KQ414772.1 exonerate:protein2genome:local exon 35475 35630 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 35475 35630 116 - . alignment_id 2 ; Query NvOr151 ; Align 35631 325 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr151 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 326 -> 376 Target range: 41395 -> 41245 327 : LeuTyrLeuAsnValTyrSerAsnGluTrpTyrAsnLeuThrLysGluAlaLysThrLeu : 346 ||| !:!!..! !|||..! ! !||||||||| !||| !..!.!!:!!|||||| LeuLeuIleArgArgTyrAspAlaValTrpTyrAsnSerThrProArgThrGlnThrLeu 41395 : CTGCTCATTCGCAGGTACGATGCAGTATGGTACAACAGTACGCCAAGAACGCAAACTTTG : 41338 347 : LeuLysIleValMetLeuArgCysLeuLysProSerLysPheThrAlaGlyGlyLeuTyr : 366 ! !! !:!!!.!:!! !||| !|||! ||| !! !.!!||||||||||||||| TyrMetLeuAlaLeuArgArgThrLeuThrProProLeuLeuThrAlaGlyGlyLeuIle 41337 : TACATGCTAGCTTTGAGGAGGACTTTAACTCCACCACTGCTCACTGCAGGAGGACtgatt : 41278 367 : ThrLeuAsnLeuGluSerPheGlyThrIle : 376 :::||||||||||||:::|||..!! !:!! SerLeuAsnLeuGluThrPheSerLysVal 41277 : tcgttgaatttggaaactttttcGAAGGTA : 41246 vulgar: NvOr151 326 376 . KQ414772.1 41395 41245 - 105 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 41246 41395 105 - . gene_id 3 ; sequence NvOr151 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 41246 41395 . - . KQ414772.1 exonerate:protein2genome:local exon 41246 41395 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 41246 41395 105 - . alignment_id 3 ; Query NvOr151 ; Align 41396 327 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr151 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 326 -> 376 Target range: 31913 -> 31763 327 : LeuTyrLeuAsnValTyrSerAsnGluTrpTyrAsnLeuThrLysGluAlaLysThrLeu : 346 ||| !:!!..! !|||||| !||||||!!. !||| !..!.!!:!!|||||| LeuLeuValArgArgTyrSerAlaThrTrpTyrLysSerThrProArgThrGlnThrLeu 31913 : TTGCTCGTTCGCAGATACAGTGCAACGTGGTACAAGAGTACGCCGAGAACGCAAACTTTG : 31856 347 : LeuLysIleValMetLeuArgCysLeuLysProSerLysPheThrAlaGlyGlyLeuTyr : 366 ! ! !:!!!.!:!! !||| !!|||! ||| !! !.!!||||||||||||||| ! TyrGlyLeuAlaLeuArgArgGlyLeuThrProProValLeuThrAlaGlyGlyLeuIle 31855 : TACGGGCTAGCTTTGAGAAGAGGCTTGACTCCACCGGTGCTCACAGCTGGAGGATTGATT : 31796 367 : ThrLeuAsnLeuGluSerPheGlyThrIle : 376 :!!||||||||||||!!!|||!.! !:!: SerLeuAsnLeuGluThrPheAlaGluVal 31795 : TCGTTGAATCTGGAGACTTTTGCTGAGGTG : 31764 vulgar: NvOr151 326 376 . KQ414772.1 31913 31763 - 100 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 31764 31913 100 - . gene_id 4 ; sequence NvOr151 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 31764 31913 . - . KQ414772.1 exonerate:protein2genome:local exon 31764 31913 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 31764 31913 100 - . alignment_id 4 ; Query NvOr151 ; Align 31914 327 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr159 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 174 -> 221 Target range: 17949 -> 17808 175 : TyrPheIleAspAspGluAlaTyrTyrTyrGlnLeuMetGlyHisGlyThrIleValPhe : 194 ||||||:!!|||!!:! !! !||||||||| ! :!!!!: !||||||||| !..!.!! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIle 17949 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATT : 17892 195 : ThrValSerValMetValTyrValSerIleAspThrMetTyrAlaCysCysAlaGlnHis : 214 !:!! !|||:!!|||||| !:!! !||||||! ||| ! !.!|||||| LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 17891 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 17832 215 : LeuCysGlyLeuPheSerIle : 221 !||||||||||||:!!:!: ThrCysGlyLeuPheAlaVal 17831 : ACTTGCGGACTGTTCGCCGTG : 17809 vulgar: NvOr159 174 221 . KQ414772.1 17949 17808 - 128 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17809 17949 128 - . gene_id 1 ; sequence NvOr159 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17809 17949 . - . KQ414772.1 exonerate:protein2genome:local exon 17809 17949 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17809 17949 128 - . alignment_id 1 ; Query NvOr159 ; Align 17950 175 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr159 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 126 -> 205 Target range: 45991 -> 45757 127 : GlnThrLeuCysLeuSerTyrMetValAlaAlaTyrSerAlaLeuValValTyrSerThr : 146 .....!|||! :!! ! ! |||.!! !|||! !!.!:!! !|||!:!|||||| SerValLeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThr 45991 : TCCGTTTTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACC : 45934 147 : MetProAlaIleAlaProAlaValLeuAspIleValIleProLeuAsnGluSerArgLys : 166 !||| !||| ||| !:!!||||||:!!:!! !|||||||||||||||||| ! AlaProLeuIle---ProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgPro 45933 : GCGCCCCTCATA---CCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCA : 45877 167 : LysThrPheProTyrTyrAlaGluTyrPheIleAspAspGluAlaTyrTyrTyrGlnLeu : 186 ::: !!:! !!||| ! ||| ! ! !!:!.!!:!! !!:! !||||||||| ! :!! ArgLeuTyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrVal 45876 : CGTTTGTACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTC : 45817 187 : MetGlyHisGlyThrIleValPheThrValSerValMetValTyrValSerIleAsp : 205 :!!|||:!! !!:! !.!. !:!!:!!! !:!:||| !|||.!! !||| ValGlyTyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAlaAsp 45816 : GTGGGGTACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGAC : 45758 vulgar: NvOr159 126 205 . KQ414772.1 45991 45757 - 115 M 24 72 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45758 45991 115 - . gene_id 2 ; sequence NvOr159 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45758 45991 . - . KQ414772.1 exonerate:protein2genome:local exon 45758 45991 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 45758 45991 115 - . alignment_id 2 ; Query NvOr159 ; Align 45992 127 72 ; Align 45920 152 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr157 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 167 Query range: 137 -> 214 Target range: 20556 -> 20325 138 : TyrLeuLeuValProPheThrProMetLeuLeuAspLeuIleAspProLeuAsnGluThr : 157 !:!|||! !|||||||||.!!|||!!::!!||||||:!! !! |||||||||:!!||| PheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsnLysThr 20556 : TTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAACAAAACG : 20499 158 : ArgProLysAlaPheProTyrPheAlaGluTyrPheIleAspAsnGlnLysTyrTyrPhe : 177 ||| !:::!.!||| !||| ||| ! |||!::!!:||| !:!!:!!||||||.!. ArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMet 20498 : AGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATG : 20439 178 : GluLeuThrValHisGlyTrpIleIleCysIleLeuSerValGlnIleTyrGlyThrPhe : 197 !:!!! !:!!||| ! !.!!:!: |||:!! ! ! |||!:! !!.!!! ! IleMetIleIleHisIleMetPheValValIleMetValCysValIlePheCysAlaCys 20438 : ATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGTGCTTGC : 20379 198 : AspAlaThrTyrThrGlnLeuValGlnHisSerCysAlaLeuPheAlaIle : 214 ||| !!.!|||..! ! !|||||||||:!!|||!.!|||!!.|||:!! AspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaVal 20378 : GACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: NvOr157 137 214 . KQ414772.1 20556 20325 - 167 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20556 167 - . gene_id 1 ; sequence NvOr157 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20556 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20556 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20326 20556 167 - . alignment_id 1 ; Query NvOr157 ; Align 20557 138 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr157 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 137 -> 214 Target range: 18039 -> 17808 138 : TyrLeuLeuValProPheThrProMetLeuLeuAspLeuIleAspProLeuAsnGluThr : 157 !:!:!!! !||||||!:::!! !! |||:!!:!!! ! ! ! !!! !||| !||| PheIleGlnValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIleThr 18039 : TTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACG : 17982 158 : ArgProLysAlaPheProTyrPheAlaGluTyrPheIleAspAsnGlnLysTyrTyrPhe : 177 ! ! ! ! !||| ! !!.! ! ||||||:!!|||.!. !:!!||||||!:! ProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyrTyr 17981 : CCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTAT : 17922 178 : GluLeuThrValHisGlyTrpIleIleCysIleLeuSerValGlnIleTyrGlyThrPhe : 197 ! :!!! !:!!|||||| ! !! ! !:!::!! !||| !:!:||| !!.!!! ! TyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCys 17921 : TACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 17862 198 : AspAlaThrTyrThrGlnLeuValGlnHisSerCysAlaLeuPheAlaIle : 214 |||.!!!:!|||! ! !||||||||||||!!!|||!.!|||||||||:!: AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaVal 17861 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTG : 17809 vulgar: NvOr157 137 214 . KQ414772.1 18039 17808 - 127 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17809 18039 127 - . gene_id 2 ; sequence NvOr157 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17809 18039 . - . KQ414772.1 exonerate:protein2genome:local exon 17809 18039 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17809 18039 127 - . alignment_id 2 ; Query NvOr157 ; Align 18040 138 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr152PSE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 166 -> 245 Target range: 12795 -> 12496 167 : PheValIleGlySerLeuValHisPheLeuPheIleSerTrpProGlyGlnLeuValIle : 186 |||:!!:!: !..!|||||||||.!.|||!:!:!!!!! ! !||||||!!!|||||| PheIleValIleGlnLeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIle 12795 : TTTATCGTGATTCAATTGGTACACATACTTTACCTAACTCTTCAAGGACAATTCGTGATC : 12738 187 : AspHisSerAsnAspLeuPheValSer{Va} >>>> Target Intron 1 >>>> : 196 ||| !:!.!.!!::!!|||! !|||{:!} 62 bp AspAlaAsnGluGluIlePheGluSer{Il}++ ++ 12737 : GACGCGAACGAGGAAATCTTCGAATCG{AT}gt.........................ag : 12646 197 : {l}TyrAlaAsnGluTrpTyrValIleSerAlaArgAlaLysThrLeuLeuLysIleVal : 215 {!}|||::! ! !|||||| !! !..! !|||.!!:!!:!!|||!!! !:!!!.! {e}TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAla 12645 : {A}TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCG : 12589 216 : MetLeuArgCysIleLysProCysIleLeuThrAlaGlyGlyLeuTyrValMetSerLeu : 235 :!: !!.!|||:!!... !! ! !:!!||||||||||||||| !..!|||!:!||| LeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeu 12588 : TTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTG : 12529 236 : GluAsnPheGlyValIleLeuLysSerAla : 245 :!!!:!|||..!! !:!! !!..|||:!! GlnSerPheSerGluValThrSerSerSer 12528 : CAAAGTTTCTCAGAGGTAACAAGTTCATCG : 12497 vulgar: NvOr152PSE 166 245 . KQ414772.1 12795 12496 - 139 M 29 87 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 12497 12795 139 - . gene_id 1 ; sequence NvOr152PSE ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 12707 12795 . - . KQ414772.1 exonerate:protein2genome:local exon 12707 12795 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 12705 12706 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 12645 12706 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 12645 12646 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 12497 12644 . - . KQ414772.1 exonerate:protein2genome:local exon 12497 12644 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 12497 12795 139 - . alignment_id 1 ; Query NvOr152PSE ; Align 12796 167 87 ; Align 12644 197 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr152PSE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 158 -> 241 Target range: 45146 -> 44867 159 : LeuAspLeuIleArgLeuAlaLeuPheValIleGlySerLeuValHisPheLeuPheIle : 178 !!!|||:!! !||||||..! !|||:!!|||!.!..! !||||||.!.||||||:!: PheAspIleCysArgLeuCysThrPheLeuIleAlaGlnThrValHisMetLeuPheLeu 45146 : TTCGATATATGCAGATTGTGCACGTTCCTGATCGCACAAACTGTACACATGCTGTTTTTG : 45089 179 : SerTrpProGlyGlnLeuValIleAspHisSerAsnAspLeuPheValSer{Va} >>> : 196 !!! ! !||||||!!!||||||||| |||:!!||| ! ! !!:!{||} ThrIleGlnGlyGlnPheValIleAsp---SerHisAspThrValTyrAsn{Va}++ 45088 : ACGATTCAGGGACAGTTCGTGATCGAT---TCGCATGATACAGTGTACAAT{GT}gt... : 45034 197 : > Target Intron 1 >>>> {l}TyrAlaAsnGluTrpTyrValIleSerAlaArg : 207 33 bp {|}|||! ! |||||| !!!: !! !!!:! ++{l}TyrGluAlaIleTrpTyrLysMetProProLys 45033 : ......................ag{A}TACGAGGCAATTTGGTATAAGATGCCACCTAAA : 44972 208 : AlaLysThrLeuLeuLysIleValMetLeuArgCysIleLysProCysIleLeuThrAla : 227 !:!! !||| ! :!!!.!:!: !!:! !!:!!! ||| !|||||||||||| LeuGlnLeuLeuAspValValAlaLeuArgLysSerLeuThrProProIleLeuThrAla 44971 : CTTCAGTTGCTAGACGTTGTAGCGCTTAGAAAAAGCCTAACTCCTCCTATACTGACGGCG : 44912 228 : GlyGlyLeuTyrValMetSerLeuGluAsnPheGlyValIle : 241 ||||||||| !:!:..!|||.!.::!|||!.! !:!: GlyGlyLeuMetArgLeuAspLeuAsnSerPheAlaGlnVal 44911 : GGAGGGTTGATGCGGTTAGATTTGAATTCTTTCGCACAGGTG : 44868 vulgar: NvOr152PSE 158 241 . KQ414772.1 45146 44867 - 109 M 29 87 G 1 0 M 7 21 S 0 2 5 0 2 I 0 29 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 44868 45146 109 - . gene_id 2 ; sequence NvOr152PSE ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 45037 45146 . - . KQ414772.1 exonerate:protein2genome:local exon 45037 45146 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local splice5 45035 45036 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 45004 45036 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 45004 45005 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 44868 45003 . - . KQ414772.1 exonerate:protein2genome:local exon 44868 45003 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 44868 45146 109 - . alignment_id 2 ; Query NvOr152PSE ; Align 45147 159 87 ; Align 45060 189 21 ; Align 45003 197 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr152PSE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 189 -> 241 Target range: 37064 -> 36908 190 : AsnAspLeuPheValSerValTyrAlaAsnGluTrpTyrValIleSerAlaArgAlaLys : 209 .!.!!:||||||||| !! !|||::! :!!|||||| !! !||| !!|||.!!:!! GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 37064 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 37007 210 : ThrLeuLeuLysIleValMetLeuArgCysIleLysProCysIleLeuThrAlaGlyGly : 229 ||||||! ! !:!!!.!:!! !||| !!:!:! ||| :!:||||||||||||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 37006 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 36947 230 : LeuTyrValMetSerLeuGluAsnPheGlyValIle : 241 ||| ! !:!!!:!||||||!.!|||!.!! ::: LeuIleSerLeuAsnLeuGluThrPheAlaGluVal 36946 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGaggta : 36909 vulgar: NvOr152PSE 189 241 . KQ414772.1 37064 36908 - 105 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 36909 37064 105 - . gene_id 3 ; sequence NvOr152PSE ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 36909 37064 . - . KQ414772.1 exonerate:protein2genome:local exon 36909 37064 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 36909 37064 105 - . alignment_id 3 ; Query NvOr152PSE ; Align 37065 190 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr152PSE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 189 -> 241 Target range: 35630 -> 35474 190 : AsnAspLeuPheValSerValTyrAlaAsnGluTrpTyrValIleSerAlaArgAlaLys : 209 .!.!!:||||||||| !! !|||::! :!!|||||| !! !||| !!|||.!!:!! GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 35630 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 35573 210 : ThrLeuLeuLysIleValMetLeuArgCysIleLysProCysIleLeuThrAlaGlyGly : 229 ||||||! ! !:!!!.!:!! !||| !!:!:! ||| :!:||||||||||||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 35572 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 35513 230 : LeuTyrValMetSerLeuGluAsnPheGlyValIle : 241 ||| ! !:!!!:!||||||!.!|||!.!! !:!! LeuIleSerLeuAsnLeuGluThrPheAlaGluVal 35512 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGAGGTA : 35475 vulgar: NvOr152PSE 189 241 . KQ414772.1 35630 35474 - 105 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 35475 35630 105 - . gene_id 4 ; sequence NvOr152PSE ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 35475 35630 . - . KQ414772.1 exonerate:protein2genome:local exon 35475 35630 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 35475 35630 105 - . alignment_id 4 ; Query NvOr152PSE ; Align 35631 190 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr152PSE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 0 -> 87 Target range: 20580 -> 20319 1 : TyrMetMetIleAlaGlyLeuGlyPheCysGlnIleProMetIleProIleValLeuAsp : 20 :!!:!!.!.:!! !!!.! ! !|||! :!:|||.!. !||||||:!!|||||| HisLeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAsp 20580 : CATTTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGAC : 20523 21 : LeuIleMetProLeuAsnGluSerArgProLysIleLeuPheValLysGlyGluTyrIle : 40 :!! ! !|||||||||:!!!!!||| !::::!:!!! !! ! !!.! ! ||| IleTyrAlaProLeuAsnLysThrArgLysArgValPheValTyrProAlaTyrTyrTrp 20522 : ATTTACGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGG : 20463 41 : IleAspProPheLysHisPheTyrLysLeuTyrValTyrPheAlaIleThrSerLeuThr : 60 !!:|||||| :!!:!!!:! ! !:!! :!!:!!.!. !.!!..! !:!!! ! MetAspProGluGlnTyrTyrMetIleMetIleIleHisIleMetPheValValIleMet 20462 : ATGGATCCTGAGCAATACTACATGATAATGATAATACACATAATGTTCGTGGTGATCATG : 20403 61 : ThrValThrValValSerAlaIleAspThrThrTyrThrAlaCysValHisGlnIleLeu : 80 ..! !..!:!! !!!!!||| !|||! !!.!|||..! !..!|||!!.!!. !! ! ValCysValIlePheCysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCys 20402 : GTCTGTGTCATATTCTGTGCTTGCGACATGAACTACGTGTACGCTGTGCAGCACGCATGC : 20343 81 : AlaIlePheSerIleIleLys : 87 !.!:!!!!.:!!:!!! !!:! GlyLeuLeuAlaValThrArg 20342 : GGCTTATTGGCTGTCACCAGG : 20320 vulgar: NvOr152PSE 0 87 . KQ414772.1 20580 20319 - 101 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20320 20580 101 - . gene_id 5 ; sequence NvOr152PSE ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20320 20580 . - . KQ414772.1 exonerate:protein2genome:local exon 20320 20580 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20320 20580 101 - . alignment_id 5 ; Query NvOr152PSE ; Align 20581 1 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr158 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 144 -> 204 Target range: 45937 -> 45757 145 : SerThrProIleIleValProAsnValLeuAspValValIleProLeuAsnGluSerArg : 164 |||||| !! !:!!:!!||| !:!!||||||:!!:!! !|||||||||||||||||| SerThrAlaProLeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArg 45937 : TCTACCGCGCCCCTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGT : 45880 165 : AlaLysThrPheProTyrPheIleGluTyrPheIleAspThrGluValTyrTyrTyrGln : 184 !!::: !!:! !!||| ! ! ! !!:!.!!:!! !!!!:! !||||||||| ! ProArgLeuTyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyr 45879 : CCACGTTTGTACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTAC : 45820 185 : LeuMetAlaHisGlyThrLeuCysPheThrIleSerAlaLeuValTyrValSerIleAsp : 204 :!!:!!!.!:!! !!:! !|||.!. !!!::!!!.!|||||| !|||.!! !||| ValValGlyTyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAlaAsp 45819 : GTCGTGGGGTACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGAC : 45760 vulgar: NvOr158 144 204 . KQ414772.1 45937 45757 - 110 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45758 45937 110 - . gene_id 1 ; sequence NvOr158 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45758 45937 . - . KQ414772.1 exonerate:protein2genome:local exon 45758 45937 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45758 45937 110 - . alignment_id 1 ; Query NvOr158 ; Align 45938 145 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr162 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 201 Query range: 108 -> 228 Target range: 20742 -> 20325 109 : GlnIleAlaLysGlnTrpAlaSerIleThrAspGluThrGluCysLysIleLeuAlaAsp : 128 |||||| ! ! .!.|||.!!|||||||||..!||||||||||||||||||:!!!.! ! GlnIlePheAspAspTrpThrSerIleThrSerGluThrGluCysLysIleMetValThr 20742 : CAGATATTCGACGACTGGACGTCGATCACATCTGAGACGGAATGCAAGATCATGGTGACC : 20685 129 : AsnValLysLeuCysHisProLeuCysThrPheTyrArg{V} >>>> Target Intr : 142 !!!.!::! ! ! !!.! !:!!... !! !||| !{!} 60 bp TyrAlaArgLysGlyGlnLeuIleAlaLeuCysTyrAla{A}++ 20684 : TATGCTCGAAAAGGACAACTGATCGCGTTGTGTTACGCA{G}gt................ : 20640 143 : on 1 >>>> {al}MetAlaValPheAlaLeuSerSerTyrAlaCysLeuProSerPhe : 157 {.!} ! !!.!! !! !:!!! !!:! !|||:!!||| ||| ++{la}HisLeuPheLeuProAlaAlaIlePheLeuCysValPro---Phe 20639 : .........ag{CG}CATTTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCT---TTC : 20541 158 : GlyProValIleMetAsnIleLeuLeuProLeuAsnGluThrArgGlnLysArgIlePro : 177 !.!|||:!!|||:!!:!!|||! ! !|||||||||:!!||||||:!!::: !.!! ! AlaProIleIleLeuAspIleTyrAlaProLeuAsnLysThrArgLysArgValPheVal 20540 : GCACCGATCATCTTGGACATTTACGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTT : 20481 178 : AlaProAlaGluTyrPheValAspGluGluLysTyrPheTyrIleLeuPheSerHisGly : 197 !|||||| ! |||!:::!!||| |||:!!|||!:! |||:!!.!.! !||| ! TyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMetIleMetIleIleHisIle 20480 : TATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATGATAATGATAATACACATA : 20421 198 : MetIleLeuTyrMetLeuValCysValLeuTyrValThrIleAspSerMetTyrSerCys : 217 |||.!!:!! !!::!!|||||||||:!!!:! !.!! !|||! !! ||| !! ! MetPheValValIleMetValCysValIlePheCysAlaCysAspMetAsnTyrValTyr 20420 : ATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGTGCTTGCGACATGAACTACGTGTAC : 20361 218 : IleValHisHisThrValGlyLeuValGlyIle : 228 !|||!!.|||.!! !||||||:!!!.!:!! AlaValGlnHisAlaCysGlyLeuLeuAlaVal 20360 : GCTGTGCAGCACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: NvOr162 108 228 . KQ414772.1 20742 20325 - 201 M 33 99 S 0 1 5 0 2 I 0 56 3 0 2 S 1 2 M 13 39 G 1 0 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20742 201 - . gene_id 1 ; sequence NvOr162 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 20643 20742 . - . KQ414772.1 exonerate:protein2genome:local exon 20643 20742 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 20641 20642 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 20583 20642 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 20583 20584 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 20326 20582 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20582 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 20326 20742 201 - . alignment_id 1 ; Query NvOr162 ; Align 20743 109 99 ; Align 20581 143 39 ; Align 20542 157 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr150CTE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 306 -> 373 Target range: 12780 -> 12517 307 : MetIleHisLeuLeuTyrLeuSerTyrProGlyGlnLysValLeuAspTyrSerSerSer : 326 :!!:!!|||:!!|||||||||!!! !! !|||||| |||:!!||| !:!..!..! LeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAspAlaAsnGluGlu 12780 : TTGGTACACATACTTTACCTAACTCTTCAAGGACAATTCGTGATCGACGCGAACGAGGAA : 12723 327 : IleCysGlnGlu{Se} >>>> Target Intron 1 >>>> {r}TyrThrAsnGlu : 335 |||! !:!!..!{! } 62 bp {!}|||!:! ! ! IlePheGluSer{Il}++ ++{e}TyrSerAlaLeu 12722 : ATCTTCGAATCG{AT}gt.........................ag{A}TACAGCGCTTTG : 12634 336 : TrpTyrLeuIleSerLysLysSerLysIleLeuLeuLysPheMetMetLeuArgCysIle : 355 |||||| !! !..!|||!:!!!!:!! |||!!! !!!. !:!: !!.!|||:!! TrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeuArgAsnCysLeu 12633 : TGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGTTAAGAAATTGTCTA : 12574 356 : LysProSerValLeuThrAlaGlyGlyLeuTyrIleMetAsnTyrGluAsnTyr : 373 ... !! !! !:!!||||||||||||||| !! !||||||! :!!!:!!:! SerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGlnSerPhe 12573 : TCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAAAGTTTC : 12518 vulgar: NvOr150CTE 306 373 . KQ414772.1 12780 12517 - 111 M 24 72 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 12518 12780 111 - . gene_id 1 ; sequence NvOr150CTE ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 12707 12780 . - . KQ414772.1 exonerate:protein2genome:local exon 12707 12780 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 12705 12706 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 12645 12706 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 12645 12646 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 12518 12644 . - . KQ414772.1 exonerate:protein2genome:local exon 12518 12644 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 12518 12780 111 - . alignment_id 1 ; Query NvOr150CTE ; Align 12781 307 72 ; Align 12644 332 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr150CTE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 293 -> 373 Target range: 37290 -> 36917 294 : MetGlnPheIleArgLeuAlaMetIleGluValGlyValMetIleHisLeuLeuTyrLeu : 313 |||:!!||| !!:!! !..! .!! !|||! ! !:!!:!!|||||||||!:!||| MetGluPheTyrLysTyrCysAlaPheLeuValValGlnLeuValHisLeuLeuPheLeu 37290 : ATGGAGTTCTACAAGTATTGCGCTTTCTTGGTGGTGCAACTGGTTCATTTGCTTTTCCTT : 37233 314 : SerTyrProGlyGlnLysValLeuAspTyrSerSerSerIleCysGlnGlu{Se} >>> : 331 ||| !! !|||!!. |||:!! !! !..!! !! !! !.!..!.{! } SerIleGlnGlyHisPheValIleLeuSerHisAspMetThrTyrAspAsn{Il}++ 37232 : TCTATCCAGGGACACTTTGTTATACTCTCGCATGACATGACTTACGACAAC{AT}gt... : 37175 332 : > Target Intron 1 >>>> {r}TyrThrAsnGluTrpTyrLeuIleSerLysLys : 342 133 bp {!}|||!:! :!!|||||| !! !||| !!:! ++{e}TyrSerAlaLysTrpTyrAsnSerSerProArg 37174 : ......................ag{A}TATAGCGCAAAATGGTACAACAGTTCGCCGAGA : 37013 343 : SerLysIleLeuLeuLysPheMetMetLeuArgCysIleLysProSerValLeuThrAla : 362 !!!:!!! !|||! ! !.!. :!! !||| !!:!:! ||| !!:!!||||||||| ThrGlnThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAla 37012 : ACGCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCG : 36953 363 : GlyGlyLeuTyrIleMetAsnTyrGluAsnTyr : 373 ||||||||| ! !:!!|||! |||!.!!:! GlyGlyLeuIleSerLeuAsnLeuGluThrPhe 36952 : GGAGGACTGATTTCCTTGAATTTGGAGACTTTT : 36918 vulgar: NvOr150CTE 293 373 . KQ414772.1 37290 36917 - 108 M 37 111 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 36918 37290 108 - . gene_id 2 ; sequence NvOr150CTE ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 37178 37290 . - . KQ414772.1 exonerate:protein2genome:local exon 37178 37290 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 37176 37177 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 37045 37177 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 37045 37046 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 36918 37044 . - . KQ414772.1 exonerate:protein2genome:local exon 36918 37044 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 36918 37290 108 - . alignment_id 2 ; Query NvOr150CTE ; Align 37291 294 111 ; Align 37044 332 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr150CTE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 293 -> 373 Target range: 35856 -> 35483 294 : MetGlnPheIleArgLeuAlaMetIleGluValGlyValMetIleHisLeuLeuTyrLeu : 313 |||:!!||| !!:!! !..! .!! !|||! ! !:!!:!!|||||||||!:!||| MetGluPheTyrLysTyrCysAlaPheLeuValValGlnLeuValHisLeuLeuPheLeu 35856 : ATGGAGTTCTACAAGTATTGCGCTTTCTTGGTGGTGCAACTGGTTCATTTGCTTTTCCTT : 35799 314 : SerTyrProGlyGlnLysValLeuAspTyrSerSerSerIleCysGlnGlu{Se} >>> : 331 ||| !! !|||!!. |||:!! !! !..!! !! !! !.!..!.{! } SerIleGlnGlyHisPheValIleLeuSerHisAspMetThrTyrAspAsn{Il}++ 35798 : TCTATCCAGGGACACTTTGTTATACTCTCGCATGACATGACTTACGACAAC{AT}gt... : 35741 332 : > Target Intron 1 >>>> {r}TyrThrAsnGluTrpTyrLeuIleSerLysLys : 342 133 bp {!}|||!:! :!!|||||| !! !||| !!:! ++{e}TyrSerAlaLysTrpTyrAsnSerSerProArg 35740 : ......................ag{A}TATAGCGCAAAATGGTACAACAGTTCGCCGAGA : 35579 343 : SerLysIleLeuLeuLysPheMetMetLeuArgCysIleLysProSerValLeuThrAla : 362 !!!:!!! !|||! ! !.!. :!! !||| !!:!:! ||| !!:!!||||||||| ThrGlnThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAla 35578 : ACGCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCG : 35519 363 : GlyGlyLeuTyrIleMetAsnTyrGluAsnTyr : 373 ||||||||| ! !:!!|||! |||!.!!:! GlyGlyLeuIleSerLeuAsnLeuGluThrPhe 35518 : GGAGGACTGATTTCCTTGAATTTGGAGACTTTT : 35484 vulgar: NvOr150CTE 293 373 . KQ414772.1 35856 35483 - 108 M 37 111 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 35484 35856 108 - . gene_id 3 ; sequence NvOr150CTE ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 35744 35856 . - . KQ414772.1 exonerate:protein2genome:local exon 35744 35856 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 35742 35743 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 35611 35743 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 35611 35612 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 35484 35610 . - . KQ414772.1 exonerate:protein2genome:local exon 35484 35610 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 35484 35856 108 - . alignment_id 3 ; Query NvOr150CTE ; Align 35857 294 111 ; Align 35610 332 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr150CTE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 127 -> 188 Target range: 45991 -> 45808 128 : LysIleValThrIleLeuTyrLeuValTyrLeuTyrAlaAlaGlyPheAlaPheSerGln : 147 ...:!!:!!:!!|||! ! !! !||| !:!!||| !!.!! !! !!.!|||||| SerValLeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThr 45991 : TCCGTTTTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACC : 45934 148 : ValSerMetValProValIleLeuAspTyrIleTrpProLeuAsnGluSerArgProLys : 167 !.! !!:!::!!||| !!||||||||| |||! |||||||||||||||||||||::: AlaProLeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArg 45933 : GCGCCCCTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGT : 45874 168 : IleLeuIleValHisAlaGluTyrIleIleAspProLeuGlnTyrTyrPheGluLeuTyr : 187 :!:! ! ! ! ! ||| ! ! ! !.!!:!!||| !.!.||||||!:! ! :!! LeuTyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValVal 45873 : TTGTACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTG : 45814 188 : Gly : 188 ||| Gly 45813 : GGG : 45809 vulgar: NvOr150CTE 127 188 . KQ414772.1 45991 45808 - 102 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45809 45991 102 - . gene_id 4 ; sequence NvOr150CTE ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45809 45991 . - . KQ414772.1 exonerate:protein2genome:local exon 45809 45991 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45809 45991 102 - . alignment_id 4 ; Query NvOr150CTE ; Align 45992 128 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr156 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 133 Query range: 149 -> 221 Target range: 20541 -> 20325 150 : LeuValProIleIleLeuAspIleAlaLeuProLeuAsnGluSerArgArgLysThrPhe : 169 !!!!.!|||||||||||||||||| ! !|||||||||:!!!!!|||!:!:::..!||| PheAlaProIleIleLeuAspIleTyrAlaProLeuAsnLysThrArgLysArgValPhe 20541 : TTCGCACCGATCATCTTGGACATTTACGCGCCACTGAACAAAACGAGAAAACGTGTGTTC : 20484 170 : ProTyrPheIleGluTyrPheIleAspThrGluPheTyrTyrTyrGlnLeuMetValHis : 189 !||| ! ! |||!::!!:||| !!||| |||||| !:!!!!::!!||| ValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMetIleMetIleIleHis 20483 : GTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATGATAATGATAATACAC : 20424 190 : GlyThrIleCysPheThrIleSerValLeuValTyrIleSerIleAspThrMetTyrAla : 209 !! !.!! ! ! !!!: ! !:!!:!!!:! !:!! !|||! !! |||!.! IleMetPheValValIleMetValCysValIlePheCysAlaCysAspMetAsnTyrVal 20423 : ATAATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGTGCTTGCGACATGAACTACGTG : 20364 210 : AlaCysCysGlnHisLeuCysGlyLeuPheAspIle : 221 !..! |||||| !|||||||||!!.! !:!! TyrAlaValGlnHisAlaCysGlyLeuLeuAlaVal 20363 : TACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: NvOr156 149 221 . KQ414772.1 20541 20325 - 133 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20541 133 - . gene_id 1 ; sequence NvOr156 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20541 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20541 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20326 20541 133 - . alignment_id 1 ; Query NvOr156 ; Align 20542 150 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr156 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 137 -> 205 Target range: 45958 -> 45757 138 : TyrValAlaLeuValValTyrThrAlaSerProValLeuValProIleIleLeuAspIle : 157 |||:!!!.!:!! !|||!:!:!!.!!:!!||| |||:!!|||.!!|||||||||:!! TyrIleGlyValSerValPheSerThrAlaPro---LeuIleProPheIleLeuAspLeu 45958 : TACATTGGAGTGTCCGTGTTTTCTACCGCGCCC---CTCATACCGTTCATCCTGGACCTA : 45904 158 : AlaLeuProLeuAsnGluSerArgArgLysThrPheProTyrPheIleGluTyrPheIle : 177 !! !||||||||||||||||||! !::: !!:! !!||| ! ! ! !!:!.!! IleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyrCysTyrPhe 45903 : ATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTACTGTTACTTC : 45844 178 : AspThrGluPheTyrTyrTyrGlnLeuMetValHisGlyThrIleCysPheThrIleSer : 197 :!! !!!!: !||||||||| ! :!!:!!! !:!! !!:! |||.!. !!!::!! AsnProAspAspTyrTyrTyrTyrValValGlyTyrThrSerAlaCysIleGlyMetAla 45843 : AATCCGGACGACTACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATAGGAATGGCC : 45784 198 : ValLeuValTyrIleSerIleAsp : 205 ! !|||||| !:!!.!! !||| GlyLeuValLeuValGlyAlaAsp 45783 : GGACTCGTGCTTGTCGGCGCTGAC : 45758 vulgar: NvOr156 137 205 . KQ414772.1 45958 45757 - 107 M 11 33 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45758 45958 107 - . gene_id 2 ; sequence NvOr156 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45758 45958 . - . KQ414772.1 exonerate:protein2genome:local exon 45758 45958 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 45758 45958 107 - . alignment_id 2 ; Query NvOr156 ; Align 45959 138 33 ; Align 45926 150 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr149 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 321 -> 374 Target range: 1345564 -> 1345723 322 : SerGluAsnLeuPheLeuSerThrTyrThrThrLysTrpTyrAsnMetSerLysLy : 340 |||....!.:!! ! !:!! !||| !!:!!!.||||||:!!:!: !! ! || SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 341 : sGlyLysMetLeuLeuLeuPheMetMetMetArgCysLeuLysProSerPheLeuT : 359 | !! ! ! !|||:!!||| !!: |||! !! !|||||||||!:!|||| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 360 : hrAlaGlyGlyPheTyrIleMetAsnPheGluAsnTyrGlySerIle : 374 |||||||| !||||||:!:.!.:::!!.|||!..!:!|||! !:!: hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIleVal 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCGTG : 1345723 vulgar: NvOr149 321 374 . KQ414782.1 1345564 1345723 + 105 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345723 105 + . gene_id 1 ; sequence NvOr149 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345723 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345723 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345723 105 + . alignment_id 1 ; Query NvOr149 ; Align 1345565 322 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr151 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 324 -> 376 Target range: 28677 -> 28521 325 : LysGluLeuTyrLeuAsnValTyrSerAsnGluTrpTyrAsnLeuThrLysGluAlaLys : 344 :!!||||||!:!:!!..! !|||||| :!!||||||||| !:!! !..!.!!:!! GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 28677 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 28620 345 : ThrLeuLeuLysIleValMetLeuArgCysLeuLysProSerLysPheThrAlaGlyGly : 364 ||||||! ! !:!!!.!:!! !||| !!|||! ||| !! !.!!|||||||||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 28619 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 28560 365 : LeuTyrThrLeuAsnLeuGluSerPheGlyThrIle : 376 ||| !:!!||||||||||||!!!|||!.! ::: LeuIleSerLeuAsnLeuGluThrPheAlaGluVal 28559 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGaggta : 28522 vulgar: NvOr151 324 376 . LHQN01017803.1 28677 28521 - 116 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 28522 28677 116 - . gene_id 1 ; sequence NvOr151 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 28522 28677 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28522 28677 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 28522 28677 116 - . alignment_id 1 ; Query NvOr151 ; Align 28678 325 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr158 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 134 Query range: 148 -> 220 Target range: 26210 -> 25994 149 : IleValProAsnValLeuAspValValIleProLeuAsnGluSerArgAlaLysThrPhe : 168 .!!||| !! :!!||||||:!!:!!!!:||||||||||||!!!||||||::! !||| PheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPhe 26210 : TTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTC : 26153 169 : ProTyrPheIleGluTyrPheIleAspThrGluValTyrTyrTyrGlnLeuMetAlaHis : 188 !||| ! ! ||||||:!!||| !!!: !|||:!!||| !:!!:!:!.!||| ValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHis 26152 : GTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCAT : 26093 189 : GlyThrLeuCysPheThrIleSerAlaLeuValTyrValSerIleAspThrMetTyrAla : 208 ! !||| ! ..!!!: ! !! !|||!:! !:!! !|||.!!! |||!.! MetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrVal 26092 : ATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTG : 26033 209 : ThrCysSerGlnHisLeuCysSerLeuPheAspVal : 220 !..! !|||||| !|||.!!|||!!.! !:!! TyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 26032 : TACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 25995 vulgar: NvOr158 148 220 . LHQN01017803.1 26210 25994 - 134 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25995 26210 134 - . gene_id 1 ; sequence NvOr158 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25995 26210 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25995 26210 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25995 26210 134 - . alignment_id 1 ; Query NvOr158 ; Align 26211 149 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr158 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 144 -> 204 Target range: 33684 -> 33504 145 : SerThrProIleIleValProAsnValLeuAspValValIleProLeuAsnGluSerArg : 164 |||||| !! !:!!:!!||| !:!!||||||:!!:!! !|||||||||||||||||| SerThrAlaProLeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArg 33684 : TCTACCGCGCCCCTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGT : 33627 165 : AlaLysThrPheProTyrPheIleGluTyrPheIleAspThrGluValTyrTyrTyrGln : 184 !!::: !!:! !!||| ! ! ! !!:!.!!:!! !!!!:! !||||||||| ! ProArgLeuTyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyr 33626 : CCACGTTTGTACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTAC : 33567 185 : LeuMetAlaHisGlyThrLeuCysPheThrIleSerAlaLeuValTyrValSerIleAsp : 204 :!!:!!!.!:!! !!:! !|||.!. !!!::!!!.!|||||| !|||.!! !||| ValValGlyTyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAlaAsp 33566 : GTCGTGGGGTACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGAC : 33507 vulgar: NvOr158 144 204 . LHQN01017803.1 33684 33504 - 110 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33505 33684 110 - . gene_id 2 ; sequence NvOr158 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33505 33684 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33505 33684 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33505 33684 110 - . alignment_id 2 ; Query NvOr158 ; Align 33685 145 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr155INT Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 180 Query range: 128 -> 214 Target range: 26252 -> 25994 129 : IleSerIleAsnIleIleLeuValGlyTyrIleThrLeuProLeuAlaProMetLeuLeu : 148 :!: !|||::::!! ! !!.! !!:!!!: !||||||!!!!.! !! !:!!||| ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeu 26252 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTG : 26195 149 : AspIleIleAspProLeuAsnGluThrArgProLysAlaPheProTyrPheAlaGluTyr : 168 ||||||:!! |||||||||||||||||| !!::! !||| !||| ||| ! ||| AspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyr 26194 : GACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTAT : 26135 169 : PheIleAspAspGlnLysTyrTyrPheGluLeuThrValHisGlyTrpIleValCysIle : 188 |||:!!|||!!:.!.||||||:!!!:! !:!!..!! !||| !!:::!!||| :!! PheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValVal 26134 : TTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTA : 26075 189 : LeuSerValGlnIleTyrGlyThrPheAspAlaThrTyrThrGlnLeuValGlnHisSer : 208 :!! !:!!...:!!!:! !!.!!! !||||||!.!|||..! ! !|||||||||:!! MetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAla 26074 : ATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCT : 26015 209 : CysAlaLeuPheAlaIle : 214 |||!.!|||!!.|||||| CysGlyLeuLeuAlaIle 26014 : TGCGGATTGTTGGCCATT : 25995 vulgar: NvOr155INT 128 214 . LHQN01017803.1 26252 25994 - 180 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25995 26252 180 - . gene_id 1 ; sequence NvOr155INT ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25995 26252 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25995 26252 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25995 26252 180 - . alignment_id 1 ; Query NvOr155INT ; Align 26253 129 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr155INT Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 137 -> 214 Target range: 18423 -> 18192 138 : TyrIleThrLeuProLeuAlaProMetLeuLeuAspIleIleAspProLeuAsnGluThr : 157 !:!||| !:!!|||! !:!! !! |||:!!:!! ! ! !!! !||| !||| PheIleGlnValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIleThr 18423 : TTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACG : 18366 158 : ArgProLysAlaPheProTyrPheAlaGluTyrPheIleAspAspGlnLysTyrTyrPhe : 177 ! ! ! ! !! !! ! !!.! ! ||||||:!!|||!!: !:!!||||||!:! ProSerLeuProValValValProGlyTyrTyrPheValAspGluValGluTyrTyrTyr 18365 : CCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTAT : 18306 178 : GluLeuThrValHisGlyTrpIleValCysIleLeuSerValGlnIleTyrGlyThrPhe : 197 ! :!!! !:!!|||||| ! !..! !:!::!! !||| !:!:||| !!.!!! ! TyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCys 18305 : TACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 18246 198 : AspAlaThrTyrThrGlnLeuValGlnHisSerCysAlaLeuPheAlaIle : 214 |||.!!!:!|||! ! !||||||||||||!!!|||!.!|||||||||:!: AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaVal 18245 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTG : 18193 vulgar: NvOr155INT 137 214 . LHQN01017803.1 18423 18192 - 120 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18193 18423 120 - . gene_id 2 ; sequence NvOr155INT ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18193 18423 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18193 18423 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18193 18423 120 - . alignment_id 2 ; Query NvOr155INT ; Align 18424 138 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr155INT Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 122 -> 177 Target range: 33732 -> 33567 123 : LeuAlaLeuGlyTyrLeuIleSerIleAsnIleIleLeuValGlyTyrIleThrLeuPro : 142 |||:!!:!! ! !! !:!!!!!||| !!||| !:!! !! !!:! !||| !||| LeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThrAlaPro 33732 : TTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCC : 33675 143 : LeuAlaProMetLeuLeuAspIleIleAspProLeuAsnGluThrArgProLysAlaPhe : 162 ||| !|||.!.:!!||||||:!!|||...||||||||||||:!!||||||::: !!:! LeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArgLeuTyr 33674 : CTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTAC : 33615 163 : ProTyrPheAlaGluTyrPheIleAspAspGlnLysTyrTyrPhe : 177 !!||| ||| ! ! !!:!.!!:!! .!. ! ||||||!:! AlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyr 33614 : GCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTAT : 33568 vulgar: NvOr155INT 122 177 . LHQN01017803.1 33732 33567 - 104 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33568 33732 104 - . gene_id 3 ; sequence NvOr155INT ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33568 33732 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33568 33732 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33568 33732 104 - . alignment_id 3 ; Query NvOr155INT ; Align 33733 123 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr154 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 178 Query range: 128 -> 214 Target range: 26252 -> 25994 129 : IleProIleAsnIleIleLeuValIleTyrIleSerLeuProLeuLeuProLeuLeuLeu : 148 :!:! !|||::::!! ! !!.!:!!!:!!!:!!!||||||!!!:!! !!! !:!!||| ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeu 26252 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTG : 26195 149 : AspValIleAspProGlnAsnGluThrArgProLysGlnPheProTyrPheAlaGluTyr : 168 |||:!!:!! ||| !|||||||||||| !!::! !||| !||| ||| ! ||| AspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyr 26194 : GACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTAT : 26135 169 : PheIleAspAspGlnLysTyrTyrPheGluLeuThrIleHisGlyTrpIleValCysIle : 188 |||:!!|||!!:.!.||||||:!!!:! !:!!..! ||| !!:::!!||| :!! PheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValVal 26134 : TTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTA : 26075 189 : LeuSerValGlnIleTyrGlyThrPheAspThrThrTyrThrGlnCysValGlnHisAla : 208 :!! !:!!...:!!!:! !!.!!! !|||.!!!.!|||..! ! ..!|||||||||||| MetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAla 26074 : ATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCT : 26015 209 : CysGlyLeuPheGlyIle : 214 |||||||||!!.!.!||| CysGlyLeuLeuAlaIle 26014 : TGCGGATTGTTGGCCATT : 25995 vulgar: NvOr154 128 214 . LHQN01017803.1 26252 25994 - 178 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25995 26252 178 - . gene_id 1 ; sequence NvOr154 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25995 26252 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25995 26252 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25995 26252 178 - . alignment_id 1 ; Query NvOr154 ; Align 26253 129 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr154 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 156 Query range: 132 -> 220 Target range: 14182 -> 13918 133 : IleIleLeuValIleTyrIleSerLeuProLeuLeuProLeuLeuLeuAspValIleAsp : 152 :!! !:!!:!!:!:!:!:!:||| !|||:!! !|||! !:!!||||||:!!:!! ValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeu 14182 : GTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTA : 14125 153 : ProGlnAsnGluThrArgProLysGlnPheProTyrPheAlaGluTyrPheIleAspAsp : 172 |||:!!||||||:!!||| ! ! !!:! !||| ||| ! ||||||! !|||!!: ProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGlu 14124 : CCGAAGAACGAGTCACGAGACGTAGCGTACATTTATCCGGCCTATTATTTCACCGACGAG : 14065 173 : GlnLysTyrTyrPheGluLeuThrIleHisGlyTrpIleValCysIleLeuSerValGln : 192 !!.|||||| !! ! ! :!!! !! ||| ! ! !||| !:!!:!! ! !! ! HisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyr 14064 : CATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTAC : 14005 193 : IleTyrGlyThrPheAspThrThrTyrThrGlnCysValGlnHisAlaCysGlyLeuPhe : 212 :!:|||! !.!!! !||||||!:!|||! ! ! !|||||||||!.!|||||||||!!. ValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeu 14004 : GTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTG : 13945 213 : GlyIleValGluGlnArgLeuArg : 220 !.!:!: !! ::::::||| AlaValSerGly***LysIleArg 13944 : GCCGTGTCCGGgtaaaaaattcga : 13919 vulgar: NvOr154 132 220 . LHQN01017803.1 14182 13918 - 156 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13919 14182 156 - . gene_id 2 ; sequence NvOr154 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13919 14182 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13919 14182 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13919 14182 156 - . alignment_id 2 ; Query NvOr154 ; Align 14183 133 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr154 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 147 Query range: 135 -> 214 Target range: 29613 -> 29376 136 : ValIleTyrIleSerLeuProLeuLeuProLeuLeuLeuAspValIleAspProGlnAsn : 155 |||:!!!:!! !:!!:!! !!:!! !|||! !:!!||||||:!!|||...|||:!!||| ValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 29613 : GTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAAC : 29556 156 : GluThrArgProLysGlnPheProTyrPheAlaGluTyrPheIleAspAspGlnLysTyr : 175 |||:!!||| ! ! ||| !||| !|||.!.||| !:!!|||!!::!!:!!:!! GluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHis 29555 : GAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCAT : 29496 176 : TyrPheGluLeuThrIleHisGlyTrpIleValCysIleLeuSerValGlnIleTyrGly : 195 |||!:! ! |||! ! !||| ! !||| ! !:!! ! !! :!!||| ! TyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIle 29495 : TACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATC : 29436 196 : ThrPheAspThrThrTyrThrGlnCysValGlnHisAlaCysGlyLeuPheGlyIle : 214 :!!! !||||||! !|||! !.!. !|||||||||||||||||||||!!...!:!! SerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeu 29435 : TCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTC : 29377 vulgar: NvOr154 135 214 . LHQN01017803.1 29613 29376 - 147 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29377 29613 147 - . gene_id 3 ; sequence NvOr154 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29377 29613 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29377 29613 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 29377 29613 147 - . alignment_id 3 ; Query NvOr154 ; Align 29614 136 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr154 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 123 -> 214 Target range: 18471 -> 18192 124 : ThrLeuGlyTyrIleIleProIleAsn<-><->IleIleLeuValIleTyrIleSerLeu : 141 ||||||! ! |||.!!|||:!:||| ||| !! ! !!:!:!:!|||..!:!! ThrLeuAspArgIlePheProValAsnAlaTyrIleCysSerPheLeuPheIleGlnVal 18471 : ACTCTCGATCGGATCTTTCCAGTGAACGCGTACATTTGCTCGTTCTTGTTCATACAAGTG : 18414 142 : ProLeuLeuProLeuLeuLeuAspValIleAspProGlnAsnGluThrArgProLysGln : 161 |||! !! ! !!! !|||:!!:!! ! ! ! !!|||||| !|||! ! ! !! ! ProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIleThrProSerLeuPro 18413 : CCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACGCCAAGTTTGCCA : 18354 162 : PheProTyrPheAlaGluTyrPheIleAspAspGlnLysTyrTyrPheGluLeuThrIle : 181 !! ! !!.! ! ||||||:!!|||!!: !:!!||||||!:! ! :!!! !:!! ValValValProGlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeu 18353 : GTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTT : 18294 182 : HisGlyTrpIleValCysIleLeuSerValGlnIleTyrGlyThrPheAspThrThrTyr : 201 |||||| ! !..! !:!::!! !||| !:!:||| !!.!!! !||||||!:!||| HisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCysAspThrSerTyr 18293 : CACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTAC : 18234 202 : ThrGlnCysValGlnHisAlaCysGlyLeuPheGlyIle : 214 ! ! ! |||||||||.!!||||||||||||!.!:!: MetValLeuValGlnHisThrCysGlyLeuPheAlaVal 18233 : ATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTG : 18193 vulgar: NvOr154 123 214 . LHQN01017803.1 18471 18192 - 128 M 9 27 G 0 6 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18193 18471 128 - . gene_id 4 ; sequence NvOr154 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18193 18471 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18193 18471 . - . insertions 6 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18193 18471 128 - . alignment_id 4 ; Query NvOr154 ; Align 18472 124 27 ; Align 18439 133 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr159 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 167 Query range: 141 -> 221 Target range: 26231 -> 25994 142 : ValValTyrSerThrMetProAlaIleAlaProAlaValLeuAspIleValIleProLeu : 161 !.!:!!!:!! ! !:!!||| !:!::!!||| :!!|||||||||:!!!!:|||||| AlaLeuPheMetCysLeuProPheValSerPro---IleLeuAspIleLeuMetProLeu 26231 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCG---ATTCTGGACATCCTTATGCCGTTG : 26177 162 : AsnGluSerArgLysLysThrPheProTyrTyrAlaGluTyrPheIleAspAspGluAla : 181 ||||||!!!||| !::! !||| !||| ||| ! ||||||:!!|||!!:!!: ! AsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLys 26176 : AACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAA : 26117 182 : TyrTyrTyrGlnLeuMetGlyHisGlyThrIleValPheThrValSerValMetValTyr : 201 |||:!!||| !:!!:!:|||||| ! !:!!||| ! ..!:!! !:!! |||!:! TyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPhe 26116 : TATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTC : 26057 202 : ValSerIleAspThrMetTyrAlaCysCysAlaGlnHisLeuCysGlyLeuPheSerIle : 221 !:!! !|||.!!! |||!.!! !..!!.!|||||| !|||||||||!!.:!!||| CysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 26056 : TGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 25997 vulgar: NvOr159 141 221 . LHQN01017803.1 26231 25994 - 167 M 11 33 G 1 0 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25995 26231 167 - . gene_id 1 ; sequence NvOr159 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25995 26231 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25995 26231 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25995 26231 167 - . alignment_id 1 ; Query NvOr159 ; Align 26232 142 33 ; Align 26199 154 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr159 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 174 -> 221 Target range: 18333 -> 18192 175 : TyrPheIleAspAspGluAlaTyrTyrTyrGlnLeuMetGlyHisGlyThrIleValPhe : 194 ||||||:!!|||!!:! !! !||||||||| ! :!!!!: !||||||||| !..!.!! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIle 18333 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATT : 18276 195 : ThrValSerValMetValTyrValSerIleAspThrMetTyrAlaCysCysAlaGlnHis : 214 !:!! !|||:!!|||||| !:!! !||||||! ||| ! !.!|||||| LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 18275 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 18216 215 : LeuCysGlyLeuPheSerIle : 221 !||||||||||||:!!:!: ThrCysGlyLeuPheAlaVal 18215 : ACTTGCGGACTGTTCGCCGTG : 18193 vulgar: NvOr159 174 221 . LHQN01017803.1 18333 18192 - 128 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18193 18333 128 - . gene_id 2 ; sequence NvOr159 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18193 18333 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18193 18333 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18193 18333 128 - . alignment_id 2 ; Query NvOr159 ; Align 18334 175 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr159 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 126 -> 205 Target range: 33738 -> 33504 127 : GlnThrLeuCysLeuSerTyrMetValAlaAlaTyrSerAlaLeuValValTyrSerThr : 146 .....!|||! :!! ! ! |||.!! !|||! !!.!:!! !|||!:!|||||| SerValLeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThr 33738 : TCCGTTTTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACC : 33681 147 : MetProAlaIleAlaProAlaValLeuAspIleValIleProLeuAsnGluSerArgLys : 166 !||| !||| ||| !:!!||||||:!!:!! !|||||||||||||||||| ! AlaProLeuIle---ProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgPro 33680 : GCGCCCCTCATA---CCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCA : 33624 167 : LysThrPheProTyrTyrAlaGluTyrPheIleAspAspGluAlaTyrTyrTyrGlnLeu : 186 ::: !!:! !!||| ! ||| ! ! !!:!.!!:!! !!:! !||||||||| ! :!! ArgLeuTyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrVal 33623 : CGTTTGTACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTC : 33564 187 : MetGlyHisGlyThrIleValPheThrValSerValMetValTyrValSerIleAsp : 205 :!!|||:!! !!:! !.!. !:!!:!!! !:!:||| !|||.!! !||| ValGlyTyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAlaAsp 33563 : GTGGGGTACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGAC : 33505 vulgar: NvOr159 126 205 . LHQN01017803.1 33738 33504 - 115 M 24 72 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33505 33738 115 - . gene_id 3 ; sequence NvOr159 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33505 33738 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33505 33738 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 33505 33738 115 - . alignment_id 3 ; Query NvOr159 ; Align 33739 127 72 ; Align 33667 152 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr157 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 176 Query range: 137 -> 214 Target range: 26225 -> 25994 138 : TyrLeuLeuValProPheThrProMetLeuLeuAspLeuIleAspProLeuAsnGluThr : 157 !:!:!!! !:!!||||||..! !! !:!!||||||:!!:!! ||||||||||||||| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThr 26225 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACG : 26168 158 : ArgProLysAlaPheProTyrPheAlaGluTyrPheIleAspAsnGlnLysTyrTyrPhe : 177 ||| !!::! !||| !||| ||| ! ||||||:!!|||.!..!.||||||:!!!:! ArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyr 26167 : CGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTAC : 26108 178 : GluLeuThrValHisGlyTrpIleIleCysIleLeuSerValGlnIleTyrGlyThrPhe : 197 !:!!..!! !||| !!:::!!:!! :!!:!! !:!!...:!!!:! !!.!!! ! LeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCys 26107 : TTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGC : 26048 198 : AspAlaThrTyrThrGlnLeuValGlnHisSerCysAlaLeuPheAlaIle : 214 ||||||!.!|||..! ! !|||||||||:!!|||!.!|||!!.|||||| AspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 26047 : GATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 25995 vulgar: NvOr157 137 214 . LHQN01017803.1 26225 25994 - 176 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25995 26225 176 - . gene_id 1 ; sequence NvOr157 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25995 26225 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25995 26225 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25995 26225 176 - . alignment_id 1 ; Query NvOr157 ; Align 26226 138 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr157 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 137 -> 214 Target range: 18423 -> 18192 138 : TyrLeuLeuValProPheThrProMetLeuLeuAspLeuIleAspProLeuAsnGluThr : 157 !:!:!!! !||||||!:::!! !! |||:!!:!!! ! ! ! !!! !||| !||| PheIleGlnValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIleThr 18423 : TTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACG : 18366 158 : ArgProLysAlaPheProTyrPheAlaGluTyrPheIleAspAsnGlnLysTyrTyrPhe : 177 ! ! ! ! !! !! ! !!.! ! ||||||:!!|||.!. !:!!||||||!:! ProSerLeuProValValValProGlyTyrTyrPheValAspGluValGluTyrTyrTyr 18365 : CCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTAT : 18306 178 : GluLeuThrValHisGlyTrpIleIleCysIleLeuSerValGlnIleTyrGlyThrPhe : 197 ! :!!! !:!!|||||| ! !! ! !:!::!! !||| !:!:||| !!.!!! ! TyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCys 18305 : TACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 18246 198 : AspAlaThrTyrThrGlnLeuValGlnHisSerCysAlaLeuPheAlaIle : 214 |||.!!!:!|||! ! !||||||||||||!!!|||!.!|||||||||:!: AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaVal 18245 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTG : 18193 vulgar: NvOr157 137 214 . LHQN01017803.1 18423 18192 - 120 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18193 18423 120 - . gene_id 2 ; sequence NvOr157 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18193 18423 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18193 18423 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18193 18423 120 - . alignment_id 2 ; Query NvOr157 ; Align 18424 138 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr150CTE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 306 -> 373 Target range: 12783 -> 12520 307 : MetIleHisLeuLeuTyrLeuSerTyrProGlyGlnLysValLeuAspTyrSerSerSer : 326 :!!:!!|||:!!|||||||||!!! !! !|||||| |||:!!||| !:!..!..! LeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAspAlaAsnGluGlu 12783 : TTGGTACACATACTTTACCTAACTCTTCAAGGACAATTCGTGATCGACGCGAACGAGGAA : 12726 327 : IleCysGlnGlu{Se} >>>> Target Intron 1 >>>> {r}TyrThrAsnGlu : 335 |||! !:!!..!{! } 62 bp {!}|||!.! ! ! IlePheGluSer{Il}++ ++{e}TyrAsnAlaLeu 12725 : ATCTTCGAATCG{AT}gt.........................ag{A}TACAACGCTTTG : 12637 336 : TrpTyrLeuIleSerLysLysSerLysIleLeuLeuLysPheMetMetLeuArgCysIle : 355 |||||| !! !..!|||!:!!!!:!! |||!!! !!!. :!: !!.!|||:!! TrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeuArgAsnCysLeu 12636 : TGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCATTAAGAAATTGTCTA : 12577 356 : LysProSerValLeuThrAlaGlyGlyLeuTyrIleMetAsnTyrGluAsnTyr : 373 ... !! !! !:!!||||||||||||||| !! !||||||! :!!!:!!:! SerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGlnSerPhe 12576 : TCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAAAGTTTC : 12521 vulgar: NvOr150CTE 306 373 . LHQN01017803.1 12783 12520 - 110 M 24 72 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 12521 12783 110 - . gene_id 1 ; sequence NvOr150CTE ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 12710 12783 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12710 12783 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 12708 12709 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 12648 12709 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 12648 12649 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 12521 12647 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12521 12647 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 12521 12783 110 - . alignment_id 1 ; Query NvOr150CTE ; Align 12784 307 72 ; Align 12647 332 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr150CTE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 293 -> 373 Target range: 28903 -> 28530 294 : MetGlnPheIleArgLeuAlaMetIleGluValGlyValMetIleHisLeuLeuTyrLeu : 313 |||:!!||| !!:!! !..! .!! !|||! ! !:!!:!!|||||||||!:!||| MetGluPheTyrLysTyrCysAlaPheLeuValValGlnLeuValHisLeuLeuPheLeu 28903 : ATGGAGTTCTACAAGTATTGCGCTTTCTTGGTGGTGCAACTGGTTCATTTGCTTTTCCTT : 28846 314 : SerTyrProGlyGlnLysValLeuAspTyrSerSerSerIleCysGlnGlu{Se} >>> : 331 ||| !! !|||!!. |||:!! !! !..!! !! !! !.!..!.{! } SerIleGlnGlyHisPheValIleLeuSerHisAspMetThrTyrAspAsn{Il}++ 28845 : TCTATCCAGGGACACTTTGTTATACTCTCGCATGACATGACTTACGACAAC{AT}gt... : 28788 332 : > Target Intron 1 >>>> {r}TyrThrAsnGluTrpTyrLeuIleSerLysLys : 342 133 bp {!}|||!:! :!!|||||| !! !||| !!:! ++{e}TyrSerAlaLysTrpTyrAsnSerSerProArg 28787 : ......................ag{A}TATAGCGCAAAATGGTACAACAGTTCGCCGAGA : 28626 343 : SerLysIleLeuLeuLysPheMetMetLeuArgCysIleLysProSerValLeuThrAla : 362 !!!:!!! !|||! ! !.!. :!! !||| !!:!:! ||| !!:!!||||||||| ThrGlnThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAla 28625 : ACGCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCG : 28566 363 : GlyGlyLeuTyrIleMetAsnTyrGluAsnTyr : 373 ||||||||| ! !:!!|||! |||!.!!:! GlyGlyLeuIleSerLeuAsnLeuGluThrPhe 28565 : GGAGGACTGATTTCCTTGAATTTGGAGACTTTT : 28531 vulgar: NvOr150CTE 293 373 . LHQN01017803.1 28903 28530 - 108 M 37 111 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 28531 28903 108 - . gene_id 2 ; sequence NvOr150CTE ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 28791 28903 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28791 28903 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 28789 28790 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 28658 28790 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 28658 28659 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 28531 28657 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28531 28657 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 28531 28903 108 - . alignment_id 2 ; Query NvOr150CTE ; Align 28904 294 111 ; Align 28657 332 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr150CTE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 127 -> 188 Target range: 33738 -> 33555 128 : LysIleValThrIleLeuTyrLeuValTyrLeuTyrAlaAlaGlyPheAlaPheSerGln : 147 ...:!!:!!:!!|||! ! !! !||| !:!!||| !!.!! !! !!.!|||||| SerValLeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThr 33738 : TCCGTTTTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACC : 33681 148 : ValSerMetValProValIleLeuAspTyrIleTrpProLeuAsnGluSerArgProLys : 167 !.! !!:!::!!||| !!||||||||| |||! |||||||||||||||||||||::: AlaProLeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArg 33680 : GCGCCCCTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGT : 33621 168 : IleLeuIleValHisAlaGluTyrIleIleAspProLeuGlnTyrTyrPheGluLeuTyr : 187 :!:! ! ! ! ! ||| ! ! ! !.!!:!!||| !.!.||||||!:! ! :!! LeuTyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValVal 33620 : TTGTACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTG : 33561 188 : Gly : 188 ||| Gly 33560 : GGG : 33556 vulgar: NvOr150CTE 127 188 . LHQN01017803.1 33738 33555 - 102 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33556 33738 102 - . gene_id 3 ; sequence NvOr150CTE ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33556 33738 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33556 33738 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33556 33738 102 - . alignment_id 3 ; Query NvOr150CTE ; Align 33739 128 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr152PSE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 138 Query range: 166 -> 245 Target range: 12798 -> 12499 167 : PheValIleGlySerLeuValHisPheLeuPheIleSerTrpProGlyGlnLeuValIle : 186 |||:!!:!: !..!|||||||||.!.|||!:!:!!!!! ! !||||||!!!|||||| PheIleValIleGlnLeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIle 12798 : TTTATCGTGATTCAATTGGTACACATACTTTACCTAACTCTTCAAGGACAATTCGTGATC : 12741 187 : AspHisSerAsnAspLeuPheValSer{Va} >>>> Target Intron 1 >>>> : 196 ||| !:!.!.!!::!!|||! !|||{:!} 62 bp AspAlaAsnGluGluIlePheGluSer{Il}++ ++ 12740 : GACGCGAACGAGGAAATCTTCGAATCG{AT}gt.........................ag : 12649 197 : {l}TyrAlaAsnGluTrpTyrValIleSerAlaArgAlaLysThrLeuLeuLysIleVal : 215 {!}||| ! ! !|||||| !! !..! !|||.!!:!!:!!|||!!! !:!!!.! {e}TyrAsnAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAla 12648 : {A}TACAACGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCA : 12592 216 : MetLeuArgCysIleLysProCysIleLeuThrAlaGlyGlyLeuTyrValMetSerLeu : 235 :!: !!.!|||:!!... !! ! !:!!||||||||||||||| !..!|||!:!||| LeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeu 12591 : TTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTG : 12532 236 : GluAsnPheGlyValIleLeuLysSerAla : 245 :!!!:!|||..!! !:!! !:::|||:!! GlnSerPheSerGluValThrArgSerSer 12531 : CAAAGTTTCTCAGAGGTAACTCGTTCATCG : 12500 vulgar: NvOr152PSE 166 245 . LHQN01017803.1 12798 12499 - 138 M 29 87 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 12500 12798 138 - . gene_id 1 ; sequence NvOr152PSE ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 12710 12798 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12710 12798 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 12708 12709 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 12648 12709 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 12648 12649 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 12500 12647 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12500 12647 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 12500 12798 138 - . alignment_id 1 ; Query NvOr152PSE ; Align 12799 167 87 ; Align 12647 197 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr152PSE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 8 -> 85 Target range: 26225 -> 25994 9 : PheCysGlnIleProMetIleProIleValLeuAspLeuIleMetProLeuAsnGluSer : 28 ||| :!:|||.!.:!: !! :!!||||||:!!:!!|||||||||||||||!!! PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThr 26225 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACG : 26168 29 : ArgProLysIleLeuPheValLysGlyGluTyrIleIleAspProPheLysHisPheTyr : 48 ||| !!::!:!:!!! !! ! !!.! ! |||.!!:!!||| ! !|||:!! !||| ArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyr 26167 : CGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTAC : 26108 49 : LysLeuTyrValTyrPheAlaIleThrSerLeuThrThrValThrValValSerAlaIle : 68 !:!! ! !:!!.!. !:!!..! !:!!! ! !:!!:!!||| !!!!!||| ! LeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCys 26107 : TTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGC : 26048 69 : AspThrThrTyrThrAlaCysValHisGlnIleLeuAlaIlePheSerIle : 85 |||.!!!.!|||..! !..!|||!!.!!. !! !!.!:!:!!.:!!||| AspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 26047 : GATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 25995 vulgar: NvOr152PSE 8 85 . LHQN01017803.1 26225 25994 - 107 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25995 26225 107 - . gene_id 2 ; sequence NvOr152PSE ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25995 26225 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25995 26225 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25995 26225 107 - . alignment_id 2 ; Query NvOr152PSE ; Align 26226 9 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr152PSE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 160 -> 241 Target range: 32984 -> 32711 161 : LeuIleArgLeuAlaLeuPheValIleGlySerLeuValHisPheLeuPheIleSerTrp : 180 ||| ||||||..! !|||:!!|||!.!..! !||||||.!.||||||:!:!!! LeuCysArgLeuCysThrPheLeuIleAlaGlnThrValHisMetLeuPheLeuThrIle 32984 : ctttgcagATTGTGCACGTTCCTGATCGCACAAACTGTACACATGCTGTTTTTGACGATT : 32927 181 : ProGlyGlnLeuValIleAspHisSerAsnAspLeuPheValSer{Va} >>>> Targ : 196 ! !||||||!!!||||||||| |||:!!||| ! ! !!:!{||} GlnGlyGlnPheValIleAsp---SerHisAspThrValTyrAsn{Va}++ 32926 : CAGGGACAGTTCGTGATCGAT---TCGCATGATACAGTGTACAAT{GT}gt......... : 32878 197 : et Intron 1 >>>> {l}TyrAlaAsnGluTrpTyrValIleSerAlaArgAlaLys : 209 33 bp {|}|||! ! |||||| !!!: !! !!!:! !:!! ++{l}TyrGluAlaIleTrpTyrLysMetProProLysLeuGln 32877 : ................ag{A}TACGAGGCAATTTGGTATAAGATGCCACCTAAACTTCAG : 32810 210 : ThrLeuLeuLysIleValMetLeuArgCysIleLysProCysIleLeuThrAlaGlyGly : 229 !||| ! :!!!.!:!: !!:! !!:!!! ||| !|||||||||||||||||| LeuLeuAspValValAlaLeuArgLysSerLeuThrProProIleLeuThrAlaGlyGly 32809 : TTGCTAGACGTTGTAGCGCTTAGAAAAAGCCTAACTCCTCCTATACTGACGGCGGGAGGG : 32750 230 : LeuTyrValMetSerLeuGluAsnPheGlyValIle : 241 ||| !:!:..!|||.!.::!|||!.! !:!: LeuMetArgLeuAspLeuAsnSerPheAlaGlnVal 32749 : TTGATGCGGTTAGATTTGAATTCTTTCGCACAGGTG : 32712 vulgar: NvOr152PSE 160 241 . LHQN01017803.1 32984 32711 - 105 M 27 81 G 1 0 M 7 21 S 0 2 5 0 2 I 0 29 3 0 2 S 1 1 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 32712 32984 105 - . gene_id 3 ; sequence NvOr152PSE ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 32881 32984 . - . LHQN01017803.1 exonerate:protein2genome:local exon 32881 32984 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local splice5 32879 32880 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 32848 32880 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 32848 32849 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 32712 32847 . - . LHQN01017803.1 exonerate:protein2genome:local exon 32712 32847 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 32712 32984 105 - . alignment_id 3 ; Query NvOr152PSE ; Align 32985 161 81 ; Align 32904 189 21 ; Align 32847 197 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr152PSE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 189 -> 241 Target range: 28677 -> 28521 190 : AsnAspLeuPheValSerValTyrAlaAsnGluTrpTyrValIleSerAlaArgAlaLys : 209 .!.!!:||||||||| !! !|||::! :!!|||||| !! !||| !!|||.!!:!! GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 28677 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 28620 210 : ThrLeuLeuLysIleValMetLeuArgCysIleLysProCysIleLeuThrAlaGlyGly : 229 ||||||! ! !:!!!.!:!! !||| !!:!:! ||| :!:||||||||||||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 28619 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 28560 230 : LeuTyrValMetSerLeuGluAsnPheGlyValIle : 241 ||| ! !:!!!:!||||||!.!|||!.!! ::: LeuIleSerLeuAsnLeuGluThrPheAlaGluVal 28559 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGaggta : 28522 vulgar: NvOr152PSE 189 241 . LHQN01017803.1 28677 28521 - 105 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 28522 28677 105 - . gene_id 4 ; sequence NvOr152PSE ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 28522 28677 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28522 28677 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 28522 28677 105 - . alignment_id 4 ; Query NvOr152PSE ; Align 28678 190 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr149 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 134 -> 220 Target range: 26252 -> 25994 135 : ValTyrCysAlaValAlaGlyPheAlaPheCysGlnMetThrAlaLeuProAlaLeuMet : 154 |||:!! :!!:!!..!!.! ! !||| :!! !! !:!! !! !!:!!:!! ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeu 26252 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTG : 26195 155 : AspIleIleLeuProLeuAsnGluSerArgProLysIleLeuValThrLysAlaGluTyr : 174 ||||||:!!:!!||||||||||||!!!||| !!::!:!:!!!||| ! !||| ! ||| AspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyr 26194 : GACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTAT : 26135 175 : ProPheAspProPheGluTyrTyrTyrGluLeuTyrPheLeuTyrCysThrAlaAlaVal : 194 ! !!||| ! !:!!|||:!!||| !:!! ! ! ! ! !!.!!.!||| PheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValVal 26134 : TTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTA : 26075 195 : ValSerValSerValLeuAlaSerThrAspSerThrTyrSerValIleIleHisGlnSer : 214 :!! !:!!||||||!!!..!:!! !|||:!!!.!||| ! ! !:!:!!.!!.:!! MetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAla 26074 : ATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCT : 26015 215 : LeuGlyIlePheGlyIle : 220 ! !|||:!:!!.!.!||| CysGlyLeuLeuAlaIle 26014 : TGCGGATTGTTGGCCATT : 25995 vulgar: NvOr149 134 220 . LHQN01017803.1 26252 25994 - 104 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25995 26252 104 - . gene_id 1 ; sequence NvOr149 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25995 26252 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25995 26252 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25995 26252 104 - . alignment_id 1 ; Query NvOr149 ; Align 26253 135 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr162 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 159 Query range: 137 -> 228 Target range: 26264 -> 25994 138 : ThrPheTyrArgValMetAlaValPheAlaLeuSerSerTyrAlaCysLeuProSerPhe : 157 |||||| ! ! !||| ! !!!...! !:!! !!:! !|||||||||! ! ! ThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheVal 26264 : ACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTG : 26207 158 : GlyProValIleMetAsnIleLeuLeuProLeuAsnGluThrArgGlnLysArgIlePro : 177 ..!||| |||:!!:!!||||||:!!|||||||||||||||||| !::! !.!! ! SerPro---IleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheVal 26206 : TCGCCG---ATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTC : 26150 178 : AlaProAlaGluTyrPheValAspGluGluLysTyrPheTyrIleLeuPheSerHisGly : 197 !|||||| ! |||||||||||||||!!:|||||| !|||:!::!! ! .!!||| ! TyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMet 26149 : TATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATG : 26090 198 : MetIleLeuTyrMetLeuValCysValLeuTyrValThrIleAspSerMetTyrSerCys : 217 :!!:!! :!::!!:!! ! !:!!!:! !.!! !|||:!!! ||| !! ! TyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyr 26089 : TATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTAC : 26030 218 : IleValHisHisThrValGlyLeuValGlyIle : 228 !|||!!.|||.!! !||||||:!!!.!||| AlaValGlnHisAlaCysGlyLeuLeuAlaIle 26029 : GCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 25995 vulgar: NvOr162 137 228 . LHQN01017803.1 26264 25994 - 159 M 22 66 G 1 0 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25995 26264 159 - . gene_id 1 ; sequence NvOr162 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25995 26264 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25995 26264 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25995 26264 159 - . alignment_id 1 ; Query NvOr162 ; Align 26265 138 66 ; Align 26199 161 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr147 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 147 -> 208 Target range: 33687 -> 33504 148 : PheCysGlnIleProMetIleProValPheLeuAspPheIleAsnProLeuAsnGluThr : 167 |||! ! |||:!:|||||| !!.!!||||||.!.|||:::||||||||||||:!! PheSerThrAlaProLeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSer 33687 : TTTTCTACCGCGCCCCTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCT : 33630 168 : ArgProLysIleLeuPheValLysAlaGluPheIlePheAspProTyrLysTyrPheTyr : 187 ||||||::::!:! ! ! !|||||| ! ! ! !|||:!!||| !! ! |||!:!||| ArgProArgLeuTyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyr 33629 : CGTCCACGTTTGTACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTAT : 33570 188 : GlnLeuTyrAlaPhePheIleGlyCysAlaAlaSerAlaValPheIleValCysSerIle : 207 ! :!! !.!!:! !! !!.!||| !!.!! !|||! !.!!:!::!! !.!! ! TyrValValGlyTyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAla 33569 : TACGTCGTGGGGTACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCT : 33510 208 : Asp : 208 ||| Asp 33509 : GAC : 33505 vulgar: NvOr147 147 208 . LHQN01017803.1 33687 33504 - 117 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33505 33687 117 - . gene_id 1 ; sequence NvOr147 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33505 33687 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33505 33687 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33505 33687 117 - . alignment_id 1 ; Query NvOr147 ; Align 33688 148 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr147 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 138 -> 224 Target range: 26252 -> 25994 139 : ValTyrMetAlaAlaAlaGlyValGlyPheCysGlnIleProMetIleProValPheLeu : 158 |||:!!!!::!! !..!!.!!.! !||| :!:|||.!.:!: !! !.!!||| ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeu 26252 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTG : 26195 159 : AspPheIleAsnProLeuAsnGluThrArgProLysIleLeuPheValLysAlaGluPhe : 178 |||.!!:!!! |||||||||||||||||| !!::!:!:!!! !! ! !||| ! !:! AspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyr 26194 : GACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTAT : 26135 179 : IlePheAspProTyrLysTyrPheTyrGlnLeuTyrAlaPhePheIleGlyCysAlaAla : 198 .!! !!||| ! !!|||||| !||| !:!! !.! !.!. ! ! !.!!.! PheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValVal 26134 : TTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTA : 26075 199 : SerAlaValPheIleValCysSerIleAspThrThrPheThrAlaValValHisGlnIle : 218 ! ! !:!!! !:!! !!|||:!! !|||.!!!.!!:!..! !!.!|||!!.!!. ! MetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAla 26074 : ATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCT : 26015 219 : IleGlyValValSerIle : 224 !|||:!!:!!:!!||| CysGlyLeuLeuAlaIle 26014 : TGCGGATTGTTGGCCATT : 25995 vulgar: NvOr147 138 224 . LHQN01017803.1 26252 25994 - 104 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25995 26252 104 - . gene_id 2 ; sequence NvOr147 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25995 26252 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25995 26252 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25995 26252 104 - . alignment_id 2 ; Query NvOr147 ; Align 26253 139 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr156 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 149 -> 221 Target range: 26210 -> 25994 150 : LeuValProIleIleLeuAspIleAlaLeuProLeuAsnGluSerArgArgLysThrPhe : 169 !!!||| !! |||||||||||| !:!!||||||||||||!!!||| !::! !||| PheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPhe 26210 : TTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTC : 26153 170 : ProTyrPheIleGluTyrPheIleAspThrGluPheTyrTyrTyrGlnLeuMetValHis : 189 !||| ! ! ||||||:!!||| !!!: |||:!!||| !:!!:!:! !||| ValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHis 26152 : GTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCAT : 26093 190 : GlyThrIleCysPheThrIleSerValLeuValTyrIleSerIleAspThrMetTyrAla : 209 ! !:!! ! ..!!!: !:!!! !|||!:! !:!! !|||.!!! |||!.! MetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrVal 26092 : ATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTG : 26033 210 : AlaCysCysGlnHisLeuCysGlyLeuPheAspIle : 221 !..! |||||| !|||||||||!!.! !||| TyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 26032 : TACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 25995 vulgar: NvOr156 149 221 . LHQN01017803.1 26210 25994 - 135 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25995 26210 135 - . gene_id 1 ; sequence NvOr156 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25995 26210 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25995 26210 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25995 26210 135 - . alignment_id 1 ; Query NvOr156 ; Align 26211 150 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr156 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 137 -> 205 Target range: 33705 -> 33504 138 : TyrValAlaLeuValValTyrThrAlaSerProValLeuValProIleIleLeuAspIle : 157 |||:!!!.!:!! !|||!:!:!!.!!:!!||| |||:!!|||.!!|||||||||:!! TyrIleGlyValSerValPheSerThrAlaPro---LeuIleProPheIleLeuAspLeu 33705 : TACATTGGAGTGTCCGTGTTTTCTACCGCGCCC---CTCATACCGTTCATCCTGGACCTA : 33651 158 : AlaLeuProLeuAsnGluSerArgArgLysThrPheProTyrPheIleGluTyrPheIle : 177 !! !||||||||||||||||||! !::: !!:! !!||| ! ! ! !!:!.!! IleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyrCysTyrPhe 33650 : ATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTACTGTTACTTC : 33591 178 : AspThrGluPheTyrTyrTyrGlnLeuMetValHisGlyThrIleCysPheThrIleSer : 197 :!! !!!!: !||||||||| ! :!!:!!! !:!! !!:! |||.!. !!!::!! AsnProAspAspTyrTyrTyrTyrValValGlyTyrThrSerAlaCysIleGlyMetAla 33590 : AATCCGGACGACTACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATAGGAATGGCC : 33531 198 : ValLeuValTyrIleSerIleAsp : 205 ! !|||||| !:!!.!! !||| GlyLeuValLeuValGlyAlaAsp 33530 : GGACTCGTGCTTGTCGGCGCTGAC : 33505 vulgar: NvOr156 137 205 . LHQN01017803.1 33705 33504 - 107 M 11 33 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33505 33705 107 - . gene_id 2 ; sequence NvOr156 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33505 33705 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33505 33705 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 33505 33705 107 - . alignment_id 2 ; Query NvOr156 ; Align 33706 138 33 ; Align 33673 150 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr159 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 330 -> 384 Target range: 34381 -> 34543 331 : LysSerIleSerIleMetAsnSerAlaTyrPheSerGluTrpTyrAsnValSerLeuLys : 350 :!!|||! !..!!!:! |||||||||||| |||.!.|||||||||||||||! ! ! GlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProPro 34382 : CAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCA : 34439 351 : SerArgLysLeuIleLysPheValMetHisArgSerLeuAsnProCysGlnPheThrAla : 370 ..! !|||! !:!! !|||:!!|||||||||!!! !..!||| ! !!.|||||| GluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAla 34440 : GAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCA : 34499 371 : GlyGlyLeuPheValMetAsnMetGluAsnPheGlySerIle : 384 ||| !!!! !..!.!.::!||||||! |||.!!!!!:!! GlyLysPheSerThrPheSerMetGluMetPheSerThrVal 34500 : GGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTGTA : 34543 vulgar: NvOr159 330 384 . KQ414804.1 34381 34543 + 115 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34382 34543 115 + . gene_id 1 ; sequence NvOr159 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 34382 34543 . + . KQ414804.1 exonerate:protein2genome:local exon 34382 34543 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34382 34543 115 + . alignment_id 1 ; Query NvOr159 ; Align 34382 331 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr159 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 330 -> 371 Target range: 51888 -> 52011 331 : LysSerIleSerIleMetAsnSerAlaTyrPheSerGluTrpTyrAsnValSerLeuLys : 350 ::!|||:!!..!||| |||:!!|||||| !|||||||||||||||:!!|||! !||| GlnSerValGluIleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLys 51889 : caGAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAA : 51946 351 : SerArgLysLeuIleLysPheValMetHisArgSerLeuAsnProCysGlnPheThrAla : 370 !:! !||||||:!! !.!!:!!|||!..|||:!! ! ||| |||.!!|||||| AsnAlaLysLeuLeuLeuIleIleMetArgArgAlaArgLeuProLeuGlnIleThrAla 51947 : AATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCA : 52006 371 : Gly : 371 ||| Gly 52007 : GGT : 52011 vulgar: NvOr159 330 371 . KQ414804.1 51888 52011 + 110 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51889 52011 110 + . gene_id 2 ; sequence NvOr159 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 51889 52011 . + . KQ414804.1 exonerate:protein2genome:local exon 51889 52011 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51889 52011 110 + . alignment_id 2 ; Query NvOr159 ; Align 51889 331 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr158 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 331 -> 372 Target range: 51888 -> 52011 332 : LysSerValSerIleMetAsnSerAlaTyrPheSerGluTrpTyrAsnLeuProLeuGlu : 351 ::!||||||..!||| |||:!!|||||| !|||||||||||||||||| !!! !:!! GlnSerValGluIleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLys 51889 : caGAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAA : 51946 352 : AlaLysLysLeuIleGlnIleIleIleHisArgSerSerIleProCysLysPheThrAla : 371 ! !||||||:!!! !||||||!!:!..|||:!!!!!:!!||| :!!.!!|||||| AsnAlaLysLeuLeuLeuIleIleMetArgArgAlaArgLeuProLeuGlnIleThrAla 51947 : AATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCA : 52006 372 : Gly : 372 ||| Gly 52007 : GGT : 52011 vulgar: NvOr158 331 372 . KQ414804.1 51888 52011 + 105 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51889 52011 105 + . gene_id 1 ; sequence NvOr158 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 51889 52011 . + . KQ414804.1 exonerate:protein2genome:local exon 51889 52011 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51889 52011 105 + . alignment_id 1 ; Query NvOr158 ; Align 51889 332 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr156 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 149 -> 221 Target range: 457195 -> 457411 150 : LeuValProIleIleLeuAspIleAlaLeuProLeuAsnGluSerArgArgLysThrP : 169 ||| !!||||||:!!|||||||||!.!:!!||||||||||||||||||! ! !! LeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluL 457196 : CTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGT : 457253 170 : heProTyrPheIleGluTyrPheIleAspThrGluPheTyrTyrTyrGlnLeuMetVa : 188 !. ! ! |||||||||:!!|||! !:!! ||| :!! ! :!!!!:!. euTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAl 457254 : TATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGC : 457310 189 : lHisGlyThrIleCysPheThrIleSerValLeuValTyrIleSerIleAspThrMet : 207 !||| !! !! |||.!. !|||:!!!.! !..!! ! !:!!! !!!::!!:!: aHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeu 457311 : GCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTA : 457367 208 : TyrAlaAlaCysCysGlnHisLeuCysGlyLeuPheAspIle : 221 ! !.!! ! ! !|||:!!|||||||||||| ! :!! LeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457368 : CTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: NvOr156 149 221 . KQ414815.1 457195 457411 + 125 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457196 457411 125 + . gene_id 1 ; sequence NvOr156 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457196 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457196 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457196 457411 125 + . alignment_id 1 ; Query NvOr156 ; Align 457196 150 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr156 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 152 -> 222 Target range: 482028 -> 482238 153 : IleIleLeuAspIleAlaLeuProLeuAsnGluSerArgArgLysThrPheProTyrP : 172 .!!:!!||||||:!! !:!!||||||||||||!!!|||! ! ! !|||||| ! PheValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValS 482029 : TTCGTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTAT : 482086 173 : heIleGluTyrPheIleAspThrGluPheTyrTyrTyrGlnLeuMetValHisGlyTh : 191 !!:||||||||||||||| !:!! |||! ! :!!! ! !!||| ! erMetGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTr 482087 : CAATGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTG : 482143 192 : rIleCysPheThrIleSerValLeuValTyrIleSerIleAspThrMetTyrAlaAla : 210 !.!!! !||| !:!! !!.! !:!! !:!!.!!|||!!:|||:!! !!.! ! pPheSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMet 482144 : GTTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATG : 482200 211 : CysCysGlnHisLeuCysGlyLeuPheAspIleVal : 222 !! !:!!||| !....!!|||||| !:!!||| TrpLeuGluHisAlaAlaSerLeuPheThrLeuVal 482201 : TGGCTTGAACACGCTGCAAGCTTGTTCACCCTTGTA : 482238 vulgar: NvOr156 152 222 . KQ414815.1 482028 482238 + 124 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482029 482238 124 + . gene_id 2 ; sequence NvOr156 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482029 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 482029 482238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482029 482238 124 + . alignment_id 2 ; Query NvOr156 ; Align 482029 153 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr156 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 153 -> 222 Target range: 475566 -> 475773 154 : IleLeuAspIleAlaLeuProLeuAsnGluSerArgArgLysThrPheProTyrPheI : 173 ||||||||| ! !|||||||||||||||||||||! !!.. !! !! ! | IleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleArgI 475567 : ATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaa : 475624 174 : leGluTyrPheIleAspThrGluPheTyrTyrTyrGlnLeuMetValHisGlyThrIl : 192 ||||||||||||||::: !:!! |||!:!|||! ! !:!!:!!:!! !|||:! leGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrVa 475625 : tagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGT : 475681 193 : eCysPheThrIleSerValLeuValTyrIleSerIleAspThrMetTyrAlaAlaCys : 211 ! .!! !:!:! !! ! !..!|||:!!:!!! !!!:.!!!!:!:!.!! !!! lThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrp 475682 : AACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGG : 475738 212 : CysGlnHisLeuCysGlyLeuPheAspIleVal : 222 ! ||||||! ! ...||||||:::|||||| LeuGlnHisCysIleSerLeuPheGluIleVal 475739 : TTGCAACATTGCATaagtttatttgaaattgtt : 475773 vulgar: NvOr156 153 222 . KQ414815.1 475566 475773 + 120 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475567 475773 120 + . gene_id 3 ; sequence NvOr156 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475567 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475567 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475567 475773 120 + . alignment_id 3 ; Query NvOr156 ; Align 475567 154 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr156 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 129 -> 221 Target range: 471534 -> 471810 130 : SerLysPheTyrMetGlyAlaSerTyrValAlaLeuValValTyrThrAlaSerProV : 149 |||!:!! ! ||| !! !|||..! !|||:!!:!! !!:!!.!! !! ! SerArgSerIleSerGlyPheTyrTyrThrAsnLeuLeuIleThrSerValIleLeuS 471535 : TCGAGATCAATTTCAGGTTTCTATTACACGAATCTACTCATTACTAGTGTAATACTGT : 471592 150 : alLeuValProIleIleLeuAspIleAlaLeuProLeuAsnGluSerArgArgLysTh : 168 !:!! !|||:!!|||||||||||| !:!!||||||||| !||||||! !::: erMetSerProLeuIleLeuAspIleIleIleProLeuAsnThrSerArgProArgTy 471593 : CCATGTCGCCTCTTATTCTCGATATTATAATACCTCTGAACACGTCACGTCCACGTTA : 471649 169 : rPheProTyrPheIleGluTyrPheIleAspThrGluPheTyrTyrTyrGlnLeuMet : 187 !||||||!:! .!!!!:!:!.!! !:!! !||| |||!:!!! ! !:!!! rPheProPheThrPheAspPheIleProAsnGlnGluGluTyrPhe***ProIleThr 471650 : CTTTCCATTTACGTTCGATTTCATTCCCAATCAAGAGGAATACTTCTAACCGATTACT : 471706 188 : ValHisGlyThrIleCysPheThrIleSerValLeuValTyrIleSerIleAspThrM : 207 :!! !..! !|||! ! !! ! !.!!:!! !!.! ||||||! !!!: !: IlePheSerGlyIleLeuCysIleCysGlyLeuAlaAlaMetIleSerSerGluGlyL 471707 : ATCTTTTCTGGCATATTGTGCATTTGTGGATTAGCAGCAATGATAAGTAGCGAGGGTC : 471766 208 : etTyrAlaAlaCysCysGlnHisLeuCysGlyLeuPheAspIle : 221 !! ! ! ! ! ! !|||:!! !!||||||!:!:!!||| euLeuMetMetAsnValLeuHisValArgGlyLeuTyrAsnIle 471767 : TGCTTATGATGAATGTTTTACACGTACGTGGATTGTATAACATC : 471810 vulgar: NvOr156 129 221 . KQ414815.1 471534 471810 + 105 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471535 471810 105 + . gene_id 4 ; sequence NvOr156 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471535 471810 . + . KQ414815.1 exonerate:protein2genome:local exon 471535 471810 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471535 471810 105 + . alignment_id 4 ; Query NvOr156 ; Align 471535 130 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr149 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 151 -> 221 Target range: 485719 -> 485929 152 : AlaLeuMetAspIleIleLeuProLeuAsnGluSerArgProLysIleLeuValThrL : 171 ::!:!!:!!||||||:!::!!||||||||| ! !!!||||||::!! :!! !! !! SerIleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleA 485720 : AGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAA : 485777 172 : ysAlaGluTyrProPheAspProPheGluTyrTyrTyrGluLeuTyrPheLeuTyrCy : 190 !.:!!|||:!! ! !!|||! ! :!!|||!:!||| :!! ! ! ! snSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValVa 485778 : ACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGT : 485834 191 : sThrAlaAlaValValSerValSerValLeuAlaSerThrAspSerThrTyrSerVal : 209 ! ! !!.!:!!:!!.!!!.!! !|||||| !||||||::: ..! lLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAla 485835 : TCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCG : 485891 210 : IleIleHisGlnSerLeuGlyIlePheGlyIleVal : 221 ||||||!!.!!.!!!! !|||:!:!:! !|||||| IleIleGlnHisThrCysGlyLeuTyrThrIleVal 485892 : ATAATACAGCACACCTGTGGTTTGTATACAATCGTT : 485929 vulgar: NvOr149 151 221 . KQ414815.1 485719 485929 + 101 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485720 485929 101 + . gene_id 1 ; sequence NvOr149 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485720 485929 . + . KQ414815.1 exonerate:protein2genome:local exon 485720 485929 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485720 485929 101 + . alignment_id 1 ; Query NvOr149 ; Align 485720 152 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr159 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 152 -> 222 Target range: 485719 -> 485929 153 : AlaValLeuAspIleValIleProLeuAsnGluSerArgLysLysThrPheProTyrT : 172 ::!:!!|||||||||:!!|||||||||||| ! !!!||| !::!|||.!!||| SerIleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleA 485720 : AGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAA : 485777 173 : yrAlaGluTyrPheIleAspAspGluAlaTyrTyrTyrGlnLeuMetGlyHisGlyTh : 191 !!:!!|||:!!|||:!!|||.!.:!! !|||!:!|||! :!! !.!|||! !.. snSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValVa 485778 : ACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGT : 485834 192 : rIleValPheThrValSerValMetValTyrValSerIleAspThrMetTyrAlaCys : 210 !:!! !! !!! !:!!.!!!.!!!:|||! :!!||| ::: ::: ... lLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAla 485835 : TCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCG : 485891 211 : CysAlaGlnHisLeuCysGlyLeuPheSerIleVal : 222 !|||||| !|||||||||!:!!!!|||||| IleIleGlnHisThrCysGlyLeuTyrThrIleVal 485892 : ATAATACAGCACACCTGTGGTTTGTATACAATCGTT : 485929 vulgar: NvOr159 152 222 . KQ414815.1 485719 485929 + 152 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485720 485929 152 + . gene_id 1 ; sequence NvOr159 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485720 485929 . + . KQ414815.1 exonerate:protein2genome:local exon 485720 485929 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485720 485929 152 + . alignment_id 1 ; Query NvOr159 ; Align 485720 153 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr159 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 153 -> 222 Target range: 482031 -> 482238 154 : ValLeuAspIleValIleProLeuAsnGluSerArgLysLysThrPheProTyrTyrA : 173 |||||||||:!!:!!:!!||||||||||||!!!|||! ! ! !|||||| ! ValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerM 482032 : GTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAA : 482089 174 : laGluTyrPheIleAspAspGluAlaTyrTyrTyrGlnLeuMetGlyHisGlyThrIl : 192 !|||||||||||||||.!.:!! !|||! ! :!!! ! !||| ! !.! etGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPh 482090 : TGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTT : 482146 193 : eValPheThrValSerValMetValTyrValSerIleAspThrMetTyrAlaCysCys : 211 ! !||| !||| !!.!! !:!! !|||.!!|||!!:|||:!! !!.! !! eSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrp 482147 : TTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGG : 482203 212 : AlaGlnHisLeuCysGlyLeuPheSerIleVal : 222 !:!!||| !....!!||||||!!!:!!||| LeuGluHisAlaAlaSerLeuPheThrLeuVal 482204 : CTTGAACACGCTGCAAGCTTGTTCACCCTTGTA : 482238 vulgar: NvOr159 153 222 . KQ414815.1 482031 482238 + 133 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482032 482238 133 + . gene_id 2 ; sequence NvOr159 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482032 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 482032 482238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482032 482238 133 + . alignment_id 2 ; Query NvOr159 ; Align 482032 154 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr159 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 134 -> 221 Target range: 457153 -> 457411 135 : ValAlaAlaTyrSerAlaLeuValValTyrSerThrMetProAlaIleAlaProAlaV : 154 |||:!!.!!|||!!!!.! !:!!||| !!!!|||:!! !:!! !||| !: ValSerThrTyrCysGlyAlaLeuValIleThrThrLeu---GlnLeuPheProIleL 457154 : GTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTG---CAACTCTTTCCGATAT : 457208 155 : alLeuAspIleValIleProLeuAsnGluSerArgLysLysThrPheProTyrTyrAl : 173 !!||||||||||||:!!|||||||||||||||||| !!!. ! ! || euLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrLeuThrAl 457209 : TACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGC : 457265 174 : aGluTyrPheIleAspAspGluAlaTyrTyrTyrGlnLeuMetGlyHisGlyThrIle : 192 ||||||||||:!!||| :!! !||| :!! ! :!!!!:!.!||| !! !! aGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleThr 457266 : GGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCACG : 457322 193 : ValPheThrValSerValMetValTyrValSerIleAspThrMetTyrAlaCysCysA : 212 !.!. !:!!:!!!.!! ..!! ..!:!!! !!!::!!:!: ! ! !! CysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnV 457323 : TGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACG : 457382 213 : laGlnHisLeuCysGlyLeuPheSerIle : 221 .!! !|||:!!||||||||||||!.!:!! alLeuHisValCysGlyLeuPheLysLeu 457383 : TACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: NvOr159 134 221 . KQ414815.1 457153 457411 + 122 M 13 39 G 1 0 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457154 457411 122 + . gene_id 3 ; sequence NvOr159 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457154 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457154 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457154 457411 122 + . alignment_id 3 ; Query NvOr159 ; Align 457154 135 39 ; Align 457193 149 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr159 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 135 -> 221 Target range: 464579 -> 464840 136 : AlaAlaTyrSerAlaLeuValValTyrSerThrMetProAlaIleAlaProAlaValL : 155 !.!..!!:!! ! !!:!!:!!:!!!:!! ! !:!:! !! !:!! !|||! !:!!| ValCysPheIleProValIleLeuPheIleCysLeuLeuGluValLeuProAspIleL 464580 : GTGTGCTTCATTCCCGTTATACTGTTCATCTGTTTACTCGAAGTATTGCCAGATATTC : 464637 156 : euAspIleValIleProLeuAsnGluSerArgLysLysThrPheProTyrTyrAlaGl : 174 |||||:!:||| ||||||||||||||||||... ! !!:! ! ! !||||| euAspValValAlaProLeuAsnGluSerArgSerHisGlnTyrLeuIleThrAlaGl 464638 : TCGACGTGGTTGCGCCCCTCAATGAATCTCGTTCTCATCAATACTTAATTACCGCGGA : 464694 175 : uTyrPheIleAspAspGluAlaTyrTyrTyrGlnLeuMetGlyHisGlyThr<->Ile : 192 |!:!|||||| !|||...:!! !!||| :!!! !! !|||||| ||| uPhePheIleThrAspSerSerProAsnTyrIleValThrCysValGlyThrAspIle 464695 : ATTTTTCATCACTGATAGTTCGCCGAATTATATCGTAACTTGTGTTGGTACGGATATT : 464751 193 : ValPheThrValSerValMetValTyrValSerIleAspThrMetTyrAlaCysCysA : 212 ..!.!!! !:!!.!!|||! !..! :!!:!! !!!:|||.!. ! !! ! ThrLeuIleMetGlyValThrThrIleIleAlaSerGluThrPheThrPheLeuLeuL 464752 : ACTCTTATCATGGGAGTCACGACAATAATTGCCTCCGAAACGTTCACTTTTTTGTTGC : 464811 213 : laGlnHisLeuCysGlyLeuPheSerIle : 221 !||||||:!!|||!.!:!!|||!.!||| euGlnHisIleCysAlaMetPheLysIle 464812 : TGCAACATATCTGCGCAATGTTCAAAATC : 464840 vulgar: NvOr159 135 221 . KQ414815.1 464579 464840 + 113 M 56 168 G 0 3 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464580 464840 113 + . gene_id 4 ; sequence NvOr159 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464580 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464580 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464580 464840 113 + . alignment_id 4 ; Query NvOr159 ; Align 464580 136 168 ; Align 464751 192 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr159 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 153 -> 222 Target range: 475566 -> 475773 154 : ValLeuAspIleValIleProLeuAsnGluSerArgLysLysThrPheProTyrTyrA : 173 :!!|||||| !:!!:!!|||||||||||||||||| !.. !! !! ! IleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleArgI 475567 : ATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaa : 475624 174 : laGluTyrPheIleAspAspGluAlaTyrTyrTyrGlnLeuMetGlyHisGlyThrIl : 192 ||||||||||||:::!!::!! !|||!:!|||! ! !:!! !:!! !|||:! leGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrVa 475625 : tagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGT : 475681 193 : eValPheThrValSerValMetValTyrValSerIleAspThrMetTyrAlaCysCys : 211 !..!.!! !:!!! !! !! ..!||||||:!!! !!!:.!!!!:!:!.!! !! lThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrp 475682 : AACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGG : 475738 212 : AlaGlnHisLeuCysGlyLeuPheSerIleVal : 222 !||||||! ! ...||||||...|||||| LeuGlnHisCysIleSerLeuPheGluIleVal 475739 : TTGCAACATTGCATaagtttatttgaaattgtt : 475773 vulgar: NvOr159 153 222 . KQ414815.1 475566 475773 + 113 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475567 475773 113 + . gene_id 5 ; sequence NvOr159 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475567 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475567 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475567 475773 113 + . alignment_id 5 ; Query NvOr159 ; Align 475567 154 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr159 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 137 -> 221 Target range: 471558 -> 471810 138 : TyrSerAlaLeuValValTyrSerThrMetProAlaIleAlaProAlaValLeuAspI : 157 |||!!! !|||:!!:!! !|||..!!!:! !:!!!!::!!||| !:!!||||||| TyrThrAsnLeuLeuIleThrSerValIleLeuSerMetSerProLeuIleLeuAspI 471559 : TACACGAATCTACTCATTACTAGTGTAATACTGTCCATGTCGCCTCTTATTCTCGATA : 471616 158 : leValIleProLeuAsnGluSerArgLysLysThrPheProTyrTyrAlaGluTyrPh : 176 ||:!!|||||||||||| !|||||| !::: !||||||!:! !!!:!:!.! leIleIleProLeuAsnThrSerArgProArgTyrPheProPheThrPheAspPheIl 471617 : TTATAATACCTCTGAACACGTCACGTCCACGTTACTTTCCATTTACGTTCGATTTCAT : 471673 177 : eIleAspAspGluAlaTyrTyrTyrGlnLeuMetGlyHisGlyThrIleValPheThr : 195 ! !:!!.!.|||! !|||!:!!! ! !:!!! ! !..! !|||:!!! !! ! eProAsnGlnGluGluTyrPhe***ProIleThrIlePheSerGlyIleLeuCysIle 471674 : TCCCAATCAAGAGGAATACTTCTAACCGATTACTATCTTTTCTGGCATATTGTGCATT : 471730 196 : ValSerValMetValTyrValSerIleAspThrMetTyrAlaCysCysAlaGlnHisL : 215 !.!!:!! !.! :!!|||! !!!: !:!! ! ! !!.! !|||: CysGlyLeuAlaAlaMetIleSerSerGluGlyLeuLeuMetMetAsnValLeuHisV 471731 : TGTGGATTAGCAGCAATGATAAGTAGCGAGGGTCTGCTTATGATGAATGTTTTACACG : 471790 216 : euCysGlyLeuPheSerIle : 221 !! !!||||||!:!!:!||| alArgGlyLeuTyrAsnIle 471791 : TACGTGGATTGTATAACATC : 471810 vulgar: NvOr159 137 221 . KQ414815.1 471558 471810 + 112 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471559 471810 112 + . gene_id 6 ; sequence NvOr159 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471559 471810 . + . KQ414815.1 exonerate:protein2genome:local exon 471559 471810 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471559 471810 112 + . alignment_id 6 ; Query NvOr159 ; Align 471559 138 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr159 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 135 -> 237 Target range: 448037 -> 448343 136 : AlaAlaTyrSerAlaLeuValValTyrSerThrMetProAlaIleAlaProAlaValL : 155 ..!!.!!:!:!! !! !:!!:!! !! !|||:!! !! !.!!!.! ! | ValValPheAlaLeuSerLeuIleSerPheThrLeuValGluPheValValHisPheL 448038 : gtGGTGTTTGCCTTGTCTTTAATTAGCTTTACCTTGGTTGAGTTCGTGGTAcattttc : 448095 156 : euAspIleValIleProLeuAsnGluSerArgLysLysThrPheProTyrTyrAlaGl : 174 ||||||||:::!!:|||:!!|||! !|||! !::! ! !.!.|||!:! !:! euAspIleLeuMetProMetAsnValSerThrArgHisGluLeuProPheLeuIleGl 448096 : tcgatattttaATGCCAATGAACGTATCTACACGGCACGAGCTACCCTTCCTAATTCA : 448152 175 : uTyrPheIleAspAspGluAlaTyrTyrTyrGlnLeuMetGlyHisGlyThrIleVal : 193 !! !||| !|||.!.!!: !!:!!:!:!! ! :!!:!:! ! ! !! !:!!:!! nCysPheCysAspGlnAspLysPhePheHisTyrIleLeuValPheLeuIleValLeu 448153 : ATGTTTCTGTGATCAAGATAAATTCTTCCACTATATATTAGTTTTCTTGATCGTTCTC : 448209 194 : PheThrValSerValMetValTyrValSerIleAspThrMetTyrAlaCysCysAlaG : 213 !! !:!!.!!! !! ||| :!!:!!! ! |||! ||| ! ! !::!| ThrIleLeuGlyGlySerValValLeuAlaThrThrThrThrTyrLeuIlePheSerG 448210 : ACTATTTTGGGTGGAAGTGTGGTATTAGCCACTACAACGACTTACTTGATATTCAGTC : 448269 214 : lnHisLeuCysGlyLeuPheSerIleValGluTyrArgLeuGlnGluAlaLeuArgTh : 232 |||||! !||||||||||||!.!|||!.!! !!! ..!:!!..! |||:!! lnHisCysCysGlyLeuPheLysIleAlaGly***GluIleMetThrAlaMetPheAs 448270 : AACATTGTTGTGGATTGTTCAAAATTGCAGGGTAAGAAATTATGACTGCTATGtttga : 448326 233 : rAspAspLysLeuHis : 237 |||...::: pThrLysLysPheTyr 448327 : tacaaaaaaattttat : 448343 vulgar: NvOr159 135 237 . KQ414815.1 448037 448343 + 106 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448038 448343 106 + . gene_id 7 ; sequence NvOr159 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448038 448343 . + . KQ414815.1 exonerate:protein2genome:local exon 448038 448343 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448038 448343 106 + . alignment_id 7 ; Query NvOr159 ; Align 448038 136 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr161 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 146 -> 216 Target range: 485722 -> 485929 147 : LeuTrpAspTyrIleValProLeuGluAsnAlaThrArgProAsnAlaLeuProTyrT : 166 :!! !||| !:!::!!|||||| ||| !|||||||||....!!:!!||| IleLeuAspIleLeuIleProLeu---AsnTyrThrArgProArgThrIleProIleA 485723 : ATTCTGGACATTTTGATTCCTTTG---AATTACACTCGTCCGCGGACGATTCCTATAA : 485777 167 : yrAlaGluTyrGlyValAspGlnGluLysTyrTyrPheProLeuMetGlyGlnAlaVa : 185 !!:!!|||:!! !|||||||||:!!||||||!:!!:!|||:!! !.!!!.!.!|| snSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValVa 485778 : ACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGT : 485834 186 : lPheGlyGlyIleGlyThrGlyMetLeuLeuValThrPheAspLeuGlyPheIleLeu : 204 |.!! !! !||| ! !!.!!!::!!|||:!!!:! :::::: ...::: ! lLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAla 485835 : TCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCG : 485891 205 : ThrValGlnHisValValAlaLeuPheAlaLeuVal : 216 ! !:!!||||||..! !!.!|||!:!.!!:!!||| IleIleGlnHisThrCysGlyLeuTyrThrIleVal 485892 : ATAATACAGCACACCTGTGGTTTGTATACAATCGTT : 485929 vulgar: NvOr161 146 216 . KQ414815.1 485722 485929 + 107 M 8 24 G 1 0 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485929 107 + . gene_id 1 ; sequence NvOr161 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485929 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485929 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 485723 485929 107 + . alignment_id 1 ; Query NvOr161 ; Align 485723 147 24 ; Align 485747 156 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr157 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 138 -> 220 Target range: 482007 -> 482253 139 : LeuLeuValProPheThrProMetLeuLeuAspLeuIleAspProLeuAsnGluThrA : 158 :!!||| !! !.!.:!! !.!.:!!||||||:!!|||! !|||||||||||||||| IleLeuCysHisMetSerSerPheValLeuAspValIleValProLeuAsnGluThrA 482008 : ATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTCCTCTAAACGAGACTC : 482065 159 : rgProLysAlaPheProTyrPheAlaGluTyrPheIleAspAsnGlnLysTyrTyrPh : 177 || !! ! !|||||| ! !|||||||||||||||.!.|||||||||! .! rgThrHisGlnPheProValSerMetGluTyrPheIleAspGlnGlnLysTyrSerLe 482066 : GTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCAGCAGAAATATTCACT : 482122 178 : eGluLeuThrValHisGlyTrpIleIleCysIleLeuSerValGlnIleTyrGlyThr : 196 ! :!!||| !!||| !|||.!! !! !:!!:!! !!.! !||| !! ! ! uPheIleThrPheHisGlnTrpPheSerPheLeuValValAlaThrIleIleValGly 482123 : TTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGG : 482179 197 : PheAspAlaThrTyrThrGlnLeuValGlnHisSerCysAlaLeuPheAlaIleValG : 216 .!.!!:.!! ! !..!..!! !:!!:!!|||:!!...::!||||||.!!:!!|||. IleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerLeuPheThrLeuValA 482180 : ATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCTTGTTCACCCTTGTAA : 482239 217 : luTyrArgLeuGly : 220 .!!! !.!! !||| rg***AsnCysGly 482240 : GGTAAAATTGCGGG : 482253 vulgar: NvOr157 138 220 . KQ414815.1 482007 482253 + 139 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482008 482253 139 + . gene_id 1 ; sequence NvOr157 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482008 482253 . + . KQ414815.1 exonerate:protein2genome:local exon 482008 482253 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482008 482253 139 + . alignment_id 1 ; Query NvOr157 ; Align 482008 139 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr157 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 138 -> 215 Target range: 475542 -> 475773 139 : LeuLeuValProPheThrProMetLeuLeuAspLeuIleAspProLeuAsnGluThrA : 158 :!!|||:!!! !|||:!! !!! !:!!||||||! !:!: ||||||||||||:!!| IleLeuLeuLeuPheSerSerLysIleLeuAspSerLeuLeuProLeuAsnGluSerA 475543 : ATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTC : 475600 159 : rgProLysAlaPheProTyrPheAlaGluTyrPheIleAspAsnGlnLysTyrTyrPh : 177 |||||!.. !! !! ! ||||||||||||:::.!.|||||||||!:!!: rgProSerTrpSerLeuIleArgIleGluTyrPheIleAsnGluGlnLysTyrPheTy 475601 : GTCCTAGCTGGTCTCTGAtacgaatagaatatttcataaacGAACAGAAATACTTTTA : 475657 178 : eGluLeuThrValHisGlyTrpIleIleCysIleLeuSerValGlnIleTyrGlyThr : 196 ! ! !..!:!!:!! ! :!!! !:!!|||! !! ! ! |||! !.!! rLeuSerValIleTyrGlnThrValThrIleLeuLeuPheGlyThrThrTyrValAla 475658 : TCTGAGCGTGATCTATCAGACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCA : 475714 197 : PheAspAlaThrTyrThrGlnLeuValGlnHisSerCysAlaLeuPheAlaIleVal : 215 !!!:|||! !!:!|||..!! !:!!||||||!!! :::|||||| |||||| ThrGluAlaIlePheThrMetTrpLeuGlnHisCysIleSerLeuPheGluIleVal 475715 : ACTGAAGCAATATTTACCATGTGGTTGCAACATTGCATaagtttatttgaaattgtt : 475773 vulgar: NvOr157 138 215 . KQ414815.1 475542 475773 + 124 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475543 475773 124 + . gene_id 2 ; sequence NvOr157 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475543 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475543 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475543 475773 124 + . alignment_id 2 ; Query NvOr157 ; Align 475543 139 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr157 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 144 -> 214 Target range: 457201 -> 457411 145 : ProMetLeuLeuAspLeuIleAspProLeuAsnGluThrArgProLysAlaPheProT : 164 |||!!:|||||||||:!!:!:! !||||||||||||:!!|||||| ! !!!. ! ProIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrL 457202 : CCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACC : 457259 165 : yrPheAlaGluTyrPheIleAspAsnGlnLysTyrTyrPheGluLeuThrValHisGl : 183 ! ||||||||||||:!!|||! :!!|||||| ! ! :!!! !!.!||| euThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIl 457260 : TTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACAT : 457316 184 : yTrpIleIleCysIleLeuSerValGlnIleTyrGlyThrPheAspAlaThrTyrThr : 202 ! ! ! :!::!!:!!!.! ! ! !.!! !!!::!! ! !! ! eIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIle 457317 : TATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATA : 457373 203 : GlnLeuValGlnHisSerCysAlaLeuPheAlaIle : 214 ! !|||! !||| !|||!.!|||||| !:!! ThrAsnValLeuHisValCysGlyLeuPheLysLeu 457374 : ACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: NvOr157 144 214 . KQ414815.1 457201 457411 + 107 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457202 457411 107 + . gene_id 3 ; sequence NvOr157 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457202 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457202 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457202 457411 107 + . alignment_id 3 ; Query NvOr157 ; Align 457202 145 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr155INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 138 -> 215 Target range: 482007 -> 482238 139 : IleThrLeuProLeuAlaProMetLeuLeuAspIleIleAspProLeuAsnGluThrA : 158 ||| !! !! !:!!:!! !.!.:!!||||||:!!|||! !|||||||||||||||| IleLeuCysHisMetSerSerPheValLeuAspValIleValProLeuAsnGluThrA 482008 : ATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTCCTCTAAACGAGACTC : 482065 159 : rgProLysAlaPheProTyrPheAlaGluTyrPheIleAspAspGlnLysTyrTyrPh : 177 || !! ! !|||||| ! !|||||||||||||||.!.|||||||||! .! rgThrHisGlnPheProValSerMetGluTyrPheIleAspGlnGlnLysTyrSerLe 482066 : GTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCAGCAGAAATATTCACT : 482122 178 : eGluLeuThrValHisGlyTrpIleValCysIleLeuSerValGlnIleTyrGlyThr : 196 ! :!!||| !!||| !|||.!! !! !:!!:!! !!.! !||| !! ! ! uPheIleThrPheHisGlnTrpPheSerPheLeuValValAlaThrIleIleValGly 482123 : TTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGG : 482179 197 : PheAspAlaThrTyrThrGlnLeuValGlnHisSerCysAlaLeuPheAlaIleVal : 215 .!.!!:.!! ! !..!..!! !:!!:!!|||:!!...::!||||||.!!:!!||| IleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerLeuPheThrLeuVal 482180 : ATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCTTGTTCACCCTTGTA : 482238 vulgar: NvOr155INT 138 215 . KQ414815.1 482007 482238 + 139 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482008 482238 139 + . gene_id 1 ; sequence NvOr155INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482008 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 482008 482238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482008 482238 139 + . alignment_id 1 ; Query NvOr155INT ; Align 482008 139 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr155INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 138 -> 215 Target range: 475542 -> 475773 139 : IleThrLeuProLeuAlaProMetLeuLeuAspIleIleAspProLeuAsnGluThrA : 158 ||| !|||! !!!!:!! !!! !:!!|||||| !:!: ||||||||||||:!!| IleLeuLeuLeuPheSerSerLysIleLeuAspSerLeuLeuProLeuAsnGluSerA 475543 : ATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTC : 475600 159 : rgProLysAlaPheProTyrPheAlaGluTyrPheIleAspAspGlnLysTyrTyrPh : 177 |||||!.. !! !! ! ||||||||||||:::!!:|||||||||!:!!: rgProSerTrpSerLeuIleArgIleGluTyrPheIleAsnGluGlnLysTyrPheTy 475601 : GTCCTAGCTGGTCTCTGAtacgaatagaatatttcataaacGAACAGAAATACTTTTA : 475657 178 : eGluLeuThrValHisGlyTrpIleValCysIleLeuSerValGlnIleTyrGlyThr : 196 ! ! !..!:!!:!! ! :!!..! !:!!|||! !! ! ! |||! !.!! rLeuSerValIleTyrGlnThrValThrIleLeuLeuPheGlyThrThrTyrValAla 475658 : TCTGAGCGTGATCTATCAGACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCA : 475714 197 : PheAspAlaThrTyrThrGlnLeuValGlnHisSerCysAlaLeuPheAlaIleVal : 215 !!!:|||! !!:!|||..!! !:!!||||||!!! :::|||||| |||||| ThrGluAlaIlePheThrMetTrpLeuGlnHisCysIleSerLeuPheGluIleVal 475715 : ACTGAAGCAATATTTACCATGTGGTTGCAACATTGCATaagtttatttgaaattgtt : 475773 vulgar: NvOr155INT 138 215 . KQ414815.1 475542 475773 + 121 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475543 475773 121 + . gene_id 2 ; sequence NvOr155INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475543 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475543 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475543 475773 121 + . alignment_id 2 ; Query NvOr155INT ; Align 475543 139 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr155INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 139 -> 214 Target range: 457186 -> 457411 140 : ThrLeuProLeuAlaProMetLeuLeuAspIleIleAspProLeuAsnGluThrArgP : 159 ||||||! !||| !|||!!:||||||||||||:!:! !||||||||||||:!!|||| ThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgP 457187 : ACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCC : 457244 160 : roLysAlaPheProTyrPheAlaGluTyrPheIleAspAspGlnLysTyrTyrPheGl : 178 || ! !!!. ! ! ||||||||||||:!!||| :!!|||||| ! ! roCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTy 457245 : CCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTA : 457301 179 : uLeuThrValHisGlyTrpIleValCysIleLeuSerValGlnIleTyrGlyThrPhe : 197 :!!! !!.!||| ! ! ! :!::!!:!!!.! ! ! !.!! ! rIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsn 457302 : TATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAAC : 457358 198 : AspAlaThrTyrThrGlnLeuValGlnHisSerCysAlaLeuPheAlaIle : 214 !!::!! ! !! ! ! !|||! !||| !|||!.!|||||| !:!! GluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457359 : GAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: NvOr155INT 139 214 . KQ414815.1 457186 457411 + 118 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457187 457411 118 + . gene_id 3 ; sequence NvOr155INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457187 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457187 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457187 457411 118 + . alignment_id 3 ; Query NvOr155INT ; Align 457187 140 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr147 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 150 -> 226 Target range: 457189 -> 457417 151 : IleProMetIleProValPheLeuAspPheIleAsnProLeuAsnGluThrArgProL : 170 :!:! !:!:.!!|||:!!!!.||||||.!!:!: !||||||||||||:!!|||||| LeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgProC 457190 : TTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCT : 457247 171 : ysIleLeuPheValLysAlaGluPheIlePheAspProTyrLysTyrPheTyrGlnLe : 189 |||!:!:!!! !||||||!:!.!! !!||| ! ! ||||||.!.:!! ! :! ysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIl 457248 : GTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATAT : 457304 190 : uTyrAlaPhePheIleGlyCysAlaAlaSerAlaValPheIleValCysSerIleAsp : 208 ! !||| !.!!||| !||| ! !! !|||!.! !! :!! :!!! !!!: eIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGlu 457305 : CATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAA : 457361 209 : ThrThrPheThrAlaValValHisGlnIleIleGlyValValSerIleIleLys : 226 :!! !.!!! !.!! !|||! !!.:!! !|||:!! !!!.!:!!! !!:! SerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeuThrArg 457362 : TCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTTACTAGG : 457417 vulgar: NvOr147 150 226 . KQ414815.1 457189 457417 + 105 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457190 457417 105 + . gene_id 1 ; sequence NvOr147 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457190 457417 . + . KQ414815.1 exonerate:protein2genome:local exon 457190 457417 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457190 457417 105 + . alignment_id 1 ; Query NvOr147 ; Align 457190 151 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr158 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 120 -> 221 Target range: 485626 -> 485929 121 : SerAlaAsnAspSerGlnPhePheThrLysLeuTyrMetGlyAlaAlaTyrGlyAlaL : 140 !!! !||| !!!....!!!!.|||!!. ! !!!:!.!!.! ! !||| !!! ThrLeuAsnIleThrSerIleLeuThrAsnSerIleIleAlaValIleIleGlyProS 485627 : ACACTTAACATAACAAGTATTTTAACGAACAGTATTATTGCAGTAATTATCGGTCCAT : 485684 141 : euIleValTyrValSerThrProIleIleValProAsnValLeuAspValValIlePr : 159 !:!!:!! :!!! ! ! !|||.!! ! !!:!:!!||||||:!!:!!||||| erLeuLeuValLeuIleLeuGlyIlePheAsnAsnSerIleLeuAspIleLeuIlePr 485685 : CGTTACTTGTGCTGATTCTTGGTATATTTAACAACAGTATTCTGGACATTTTGATTCC : 485741 160 : oLeuAsnGluSerArgAlaLysThrPheProTyrPheIleGluTyrPheIleAspThr : 178 ||||||| ! !!!||| !!::!|||.!!||| ! |||:!!|||:!!||| ! oLeuAsnTyrThrArgProArgThrIleProIleAsnSerGluHisPheValAspGln 485742 : TTTGAATTACACTCGTCCGCGGACGATTCCTATAAACTCGGAACATTTTGTCGATCAG : 485798 179 : GluValTyrTyrTyrGlnLeuMetAlaHisGlyThrLeuCysPheThrIleSerAlaL : 198 :!! !|||!:!|||! :!! ||||||! !..!|||! ! !!! !|||.!!|||: GlnLysTyrPheTyrProIleAlaAlaHisValValLeuPheValIleIleGlyAlaI 485799 : CAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCTCTTCGTCATTATTGGCGCGA : 485858 199 : euValTyrValSerIleAspThrMetTyrAlaThrCysSerGlnHisLeuCysSerLe : 217 !!|||! :!!||| ::: ::: .!! ! !|||||| !|||.!!|| leValLeuLeuSerThrGluIleLeuIleMetAlaIleIleGlnHisThrCysGlyLe 485859 : TAGTATTACTCAGCaccgaaatattaattatggCGATAATACAGCACACCTGTGGTTT : 485915 218 : uPheAspValVal : 221 |!:! :!!||| uTyrThrIleVal 485916 : GTATACAATCGTT : 485929 vulgar: NvOr158 120 221 . KQ414815.1 485626 485929 + 151 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485627 485929 151 + . gene_id 1 ; sequence NvOr158 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485627 485929 . + . KQ414815.1 exonerate:protein2genome:local exon 485627 485929 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485627 485929 151 + . alignment_id 1 ; Query NvOr158 ; Align 485627 121 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr158 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 152 -> 221 Target range: 482031 -> 482238 153 : ValLeuAspValValIleProLeuAsnGluSerArgAlaLysThrPheProTyrPheI : 172 ||||||||||||:!!:!!||||||||||||!!!|||.!! ! !|||||| ! ! ValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerM 482032 : GTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAA : 482089 173 : leGluTyrPheIleAspThrGluValTyrTyrTyrGlnLeuMetAlaHisGlyThrLe : 191 !:||||||||||||||| !:!! !|||! ! :!!! ! !||| ! !!! etGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPh 482090 : TGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTT : 482146 192 : uCysPheThrIleSerAlaLeuValTyrValSerIleAspThrMetTyrAlaThrCys : 210 !! !||| !:!! !||| !:!! !|||.!!|||!!:|||:!! !!.!! !!! eSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrp 482147 : TTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGG : 482203 211 : SerGlnHisLeuCysSerLeuPheAspValVal : 221 !:!!||| !...||||||||| !:!!||| LeuGluHisAlaAlaSerLeuPheThrLeuVal 482204 : CTTGAACACGCTGCAAGCTTGTTCACCCTTGTA : 482238 vulgar: NvOr158 152 221 . KQ414815.1 482031 482238 + 140 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482032 482238 140 + . gene_id 2 ; sequence NvOr158 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482032 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 482032 482238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482032 482238 140 + . alignment_id 2 ; Query NvOr158 ; Align 482032 153 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr158 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 141 -> 218 Target range: 457174 -> 457405 142 : ValTyrValSerThrProIleIleValProAsnValLeuAspValValIleProLeuA : 161 :!! !:!!!!!||| ! !:!! !!|||! :!!||||||:!!|||:!!||||||| LeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuA 457175 : CTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGA : 457232 162 : snGluSerArgAlaLysThrPheProTyrPheIleGluTyrPheIleAspThrGluVa : 180 ||||||||||| !! !!!. ! ! |||||||||:!!|||! !:!! snGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLy 457233 : ACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAA : 457289 181 : lTyrTyrTyrGlnLeuMetAlaHisGlyThrLeuCysPheThrIleSerAlaLeuVal : 199 !||| :!! ! :!!!!:|||||| !! ! !|||.!. !|||:!!||| !..! sTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThr 457290 : GTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACG : 457346 200 : TyrValSerIleAspThrMetTyrAlaThrCysSerGlnHisLeuCysSerLeuPhe : 218 ! ..!:!!! !!!::!!:!: ! !||| ! !! !|||:!!|||.!!|||||| LeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPhe 457347 : TTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTC : 457405 vulgar: NvOr158 141 218 . KQ414815.1 457174 457405 + 131 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457175 457405 131 + . gene_id 3 ; sequence NvOr158 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457175 457405 . + . KQ414815.1 exonerate:protein2genome:local exon 457175 457405 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457175 457405 131 + . alignment_id 3 ; Query NvOr158 ; Align 457175 142 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr158 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 151 -> 221 Target range: 475563 -> 475773 152 : AsnValLeuAspValValIleProLeuAsnGluSerArgAlaLysThrPheProTyrP : 171 !!.:!!|||||| !:!!:!!|||||||||||||||||| !!!.. !! !! ! LysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleA 475564 : AAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtac : 475621 172 : heIleGluTyrPheIleAspThrGluValTyrTyrTyrGlnLeuMetAlaHisGlyTh : 190 |||||||||||||||::: !:!! !|||!:!|||! ! !:!! !:!! !|| rgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnTh 475622 : gaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGAC : 475678 191 : rLeuCysPheThrIleSerAlaLeuValTyrValSerIleAspThrMetTyrAlaThr : 209 |:!! .!! !:!:! !!.! !..!||||||:!!! !!!:.!!!!:!:!.!!! ! rValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMet 475679 : TGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATG : 475735 210 : CysSerGlnHisLeuCysSerLeuPheAspValVal : 221 !! ! !||||||! ! |||||||||::::::||| TrpLeuGlnHisCysIleSerLeuPheGluIleVal 475736 : TGGTTGCAACATTGCATaagtttatttgaaattgtt : 475773 vulgar: NvOr158 151 221 . KQ414815.1 475563 475773 + 121 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475564 475773 121 + . gene_id 4 ; sequence NvOr158 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475564 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475564 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475564 475773 121 + . alignment_id 4 ; Query NvOr158 ; Align 475564 152 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr158 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 140 -> 221 Target range: 461000 -> 461243 141 : IleValTyrValSerThrProIleIleValProAsnValLeuAspValValIleProL : 160 :!!:!! :!!:!! ! ! !:!!|||...:!!!!!! :!!|||! ! !! LeuIleMetIleAlaLeuIleProTyrLeuProArgIlePheAlaIleValThrHisG 461001 : CTAATAATGATCGCGTTAATTCCGTATTTGCCGCGGATCTTCGCGATTGTGACGCATC : 461058 161 : euAsnGluSerArgAlaLysThrPheProTyrPheIleGluTyrPheIleAspThrGl : 179 !|||..!!!!||| !! !! !.!.||| !.!!:!:|||||| !:!:||| !.! lnAsnArgThrArgProLeuLysIleProIleIleValGluTyrHisValAspHisAs 461059 : AGAACAGAACTCGTCCGTTGAAAATACCGATCATCGTGGAGTATCACGTGGATCATAA : 461115 180 : uValTyrTyrTyrGlnLeuMetAlaHisGlyThrLeuCysPheThrIleSerAlaLeu : 198 .! !|||!:! !!! !:!!!!: !||| !!.!!!!||| ! !|||.!! !! ! nGluTyrPheAspLeuIleIleLeuHisIleAsnPheCysHisPheIleGlyPheCys 461116 : CGAGTACTTCGATCTGATCATATTACACATTAACTTCTGCCACTTTATCGGCTTCTGC : 461172 199 : ValTyrValSerIleAspThrMetTyrAlaThrCysSerGlnHisLeuCysSerLeuP : 218 ||| !:!!||| !!!:..!! !! !..! !:!!:!!|||:!!|||||||||| ValValIleSerAlaGluValThrAsnLeuValLeuAlaLysHisIleCysSerLeuP 461173 : GTTGTTATATCTGCTGAAGTGACAAATTTGGTACTTGCGAAACACATTTGCTCGTTGT : 461232 219 : heAspValVal : 221 |||||:!!||| heAspLeuVal 461233 : TCGATCTTGTC : 461243 vulgar: NvOr158 140 221 . KQ414815.1 461000 461243 + 114 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 461001 461243 114 + . gene_id 5 ; sequence NvOr158 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 461001 461243 . + . KQ414815.1 exonerate:protein2genome:local exon 461001 461243 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 461001 461243 114 + . alignment_id 5 ; Query NvOr158 ; Align 461001 141 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr158 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 139 -> 220 Target range: 464594 -> 464840 140 : LeuIleValTyrValSerThrProIleIleValProAsnValLeuAspValValIleP : 159 :!!|||:!!!:!:!!!!! !! ! !:!!:!!|||:!!:!!|||||||||||| | ValIleLeuPheIleCysLeuLeuGluValLeuProAspIleLeuAspValValAlaP 464595 : GTTATACTGTTCATCTGTTTACTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGC : 464652 160 : roLeuAsnGluSerArgAlaLysThrPheProTyrPheIleGluTyrPheIleAspTh : 178 |||||||||||||||||:!! ! !!:! ! ! ! |||!:!|||||| ! roLeuAsnGluSerArgSerHisGlnTyrLeuIleThrAlaGluPhePheIleThrAs 464653 : CCCTCAATGAATCTCGTTCTCATCAATACTTAATTACCGCGGAATTTTTCATCACTGA : 464709 179 : rGluValTyrTyrTyrGlnLeuMetAlaHisGlyThr<->LeuCysPheThrIleSer : 196 !... ! !!||| :!!! ..! !|||||| :!! !.!!! !!!:.!! pSerSerProAsnTyrIleValThrCysValGlyThrAspIleThrLeuIleMetGly 464710 : TAGTTCGCCGAATTATATCGTAACTTGTGTTGGTACGGATATTACTCTTATCATGGGA : 464766 197 : AlaLeuValTyrValSerIleAspThrMetTyrAlaThrCysSerGlnHisLeuCysS : 216 !.! !..! :!!:!! !!!:|||.!. ! ! !! !||||||:!!|||: ValThrThrIleIleAlaSerGluThrPheThrPheLeuLeuLeuGlnHisIleCysA 464767 : GTCACGACAATAATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCG : 464826 217 : erLeuPheAspVal : 220 !!:!!||| ! :!! laMetPheLysIle 464827 : CAATGTTCAAAATC : 464840 vulgar: NvOr158 139 220 . KQ414815.1 464594 464840 + 100 M 51 153 G 0 3 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464595 464840 100 + . gene_id 6 ; sequence NvOr158 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464595 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464595 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464595 464840 100 + . alignment_id 6 ; Query NvOr158 ; Align 464595 140 153 ; Align 464751 191 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr152PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 17 -> 87 Target range: 475566 -> 475776 18 : ValLeuAspLeuIleMetProLeuAsnGluSerArgProLysIleLeuPheValLysG : 37 :!!||||||! !:!::!:|||||||||||||||||||||!.. ! !.!.:::::: IleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleArgI 475567 : ATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaa : 475624 38 : lyGluTyrIleIleAspProPheLysHisPheTyrLysLeuTyrValTyrPheAlaIl : 56 ||||||...|||::: ! |||:!!|||||| ! ! :!!||| .!!:! leGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrVa 475625 : tagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGT : 475681 57 : eThrSerLeuThrThrValThrValValSerAlaIleAspThrThrTyrThrAlaCys : 75 !|||! !||| ! !! !|||..! ! !|||! !!!:.!!! !!:!||| !!! lThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrp 475682 : AACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGG : 475738 76 : ValHisGlnIleLeuAlaIlePheSerIleIleLys : 87 :!!!!.!!. !:!:::::::|||...|||:::::! LeuGlnHisCysIleSerLeuPheGluIleValArg 475739 : TTGCAACATTGCATaagtttatttgaaattgttagG : 475776 vulgar: NvOr152PSE 17 87 . KQ414815.1 475566 475776 + 119 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475567 475776 119 + . gene_id 1 ; sequence NvOr152PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475567 475776 . + . KQ414815.1 exonerate:protein2genome:local exon 475567 475776 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475567 475776 119 + . alignment_id 1 ; Query NvOr152PSE ; Align 475567 18 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr152PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 11 -> 87 Target range: 457189 -> 457417 12 : IleProMetIleProIleValLeuAspLeuIleMetProLeuAsnGluSerArgProL : 31 :!:! !:!:.!!||||||:!!||||||:!!:!::!:||||||||||||||||||||| LeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgProC 457190 : TTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCT : 457247 32 : ysIleLeuPheValLysGlyGluTyrIleIleAspProPheLysHisPheTyrLysLe : 50 |||!:!:!!! !!.!||||||.!!:!!||| ! |||:!!.!.:!! ! :! ysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIl 457248 : GTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATAT : 457304 51 : uTyrValTyrPheAlaIleThrSerLeuThrThrValThrValValSerAlaIleAsp : 69 ! !!.!:!!.!! !! ! !|||! !.!!!.!|||..!:!!!!!|||! !!!: eIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGlu 457305 : CATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAA : 457361 70 : ThrThrTyrThrAlaCysValHisGlnIleLeuAlaIlePheSerIleIleLys : 87 :!! ! !! !.!! !|||! !!.:!!! !!.!:!:|||!.!:!!! !!:! SerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeuThrArg 457362 : TCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTTACTAGG : 457417 vulgar: NvOr152PSE 11 87 . KQ414815.1 457189 457417 + 113 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457190 457417 113 + . gene_id 2 ; sequence NvOr152PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457190 457417 . + . KQ414815.1 exonerate:protein2genome:local exon 457190 457417 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457190 457417 113 + . alignment_id 2 ; Query NvOr152PSE ; Align 457190 12 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr160 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 144 -> 216 Target range: 461027 -> 461243 145 : LeuProLeuLeuAspTyrValAlaProLeuAspAsnSerSerArgProValValLeuP : 164 ||||||! !:!! ! :!!!.! !!! !.!.|||!!!!!!||||||:!! !:!!| LeuProArgIlePheAlaIleValThrHisGlnAsnArgThrArgProLeuLysIleP 461028 : TTGCCGCGGATCTTCGCGATTGTGACGCATCAGAACAGAACTCGTCCGTTGAAAATAC : 461085 165 : roTyrTyrAlaGluTyrTyrIleAspGlnArgLysTyrTyrLeuProLeuMetLeuLy : 183 || ! !!.!||||||:!!:!:|||!!.!.!:!!|||!:! !! !:!!!!:||| ! roIleIleValGluTyrHisValAspHisAsnGluTyrPheAspLeuIleIleLeuHi 461086 : CGATCATCGTGGAGTATCACGTGGATCATAACGAGTACTTCGATCTGATCATATTACA : 461142 184 : sAlaLeuValAlaGlyMetIleSerMetThrValPheIleThrTyrAspMetAlaPhe : 202 ! ! !!..! !.!.|||.!!.!. !||| !!|||:!! !!!::!!.!! ! sIleAsnPheCysHisPheIleGlyPheCysValValIleSerAlaGluValThrAsn 461143 : CATTAACTTCTGCCACTTTATCGGCTTCTGCGTTGTTATATCTGCTGAAGTGACAAAT : 461199 203 : AlaMetCysValGlnHisValCysSerLeuPheAspIleIle : 216 !:!: !!.!:!!|||:!!|||||||||||||||:!!:!! LeuValLeuAlaLysHisIleCysSerLeuPheAspLeuVal 461200 : TTGGTACTTGCGAAACACATTTGCTCGTTGTTCGATCTTGTC : 461243 vulgar: NvOr160 144 216 . KQ414815.1 461027 461243 + 109 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 461028 461243 109 + . gene_id 1 ; sequence NvOr160 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 461028 461243 . + . KQ414815.1 exonerate:protein2genome:local exon 461028 461243 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 461028 461243 109 + . alignment_id 1 ; Query NvOr160 ; Align 461028 145 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr154 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 146 -> 215 Target range: 485722 -> 485929 147 : LeuLeuAspValIleAspProGlnAsnGluThrArgProLysGlnPheProTyrPheA : 166 :!!||||||:!!:!: !||| !||| ! |||||||||::! !.!!||| !: IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 167 : laGluTyrPheIleAspAspGlnLysTyrTyrPheGluLeuThrIleHisGlyTrpIl : 185 !!|||:!!|||:!!|||.!.|||||||||!:!!:! :!!.!! !|||! ! :! erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 186 : eValCysIleLeuSerValGlnIleTyrGlyThrPheAspThrThrTyrThrGlnCys : 204 ! !! !|||:!!.!!!.! !:!!! !!:! ::: ! uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 205 : ValGlnHisAlaCysGlyLeuPheGlyIleVal : 215 :!!||||||.!!|||||||||!:! !|||||| IleGlnHisThrCysGlyLeuTyrThrIleVal 485895 : ATACAGCACACCTGTGGTTTGTATACAATCGTT : 485929 vulgar: NvOr154 146 215 . KQ414815.1 485722 485929 + 132 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485929 132 + . gene_id 1 ; sequence NvOr154 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485929 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485929 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485929 132 + . alignment_id 1 ; Query NvOr154 ; Align 485723 147 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr154 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 135 -> 212 Target range: 457174 -> 457405 136 : ValIleTyrIleSerLeuProLeuLeuProLeuLeuLeuAspValIleAspProGlnA : 155 :!!:!! !! !!!!|||! !|||!!!|||:!!|||||||||:!!:!:! !||| !| LeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuA 457175 : CTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGA : 457232 156 : snGluThrArgProLysGlnPheProTyrPheAlaGluTyrPheIleAspAspGlnLy : 174 |||||:!!|||||| :!!!!. ! ! ||||||||||||:!!||| :!!|| snGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLy 457233 : ACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAA : 457289 175 : sTyrTyrPheGluLeuThrIleHisGlyTrpIleValCysIleLeuSerValGlnIle : 193 |||| ! ! :!!! ! ||| ! ! ! :!::!!:!!!.! ! sTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThr 457290 : GTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACG : 457346 194 : TyrGlyThrPheAspThrThrTyrThrGlnCysValGlnHisAlaCysGlyLeuPhe : 212 ! !.!! !!!::!! ! !! ! ! !|||! !|||!.!|||||||||||| LeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPhe 457347 : TTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTC : 457405 vulgar: NvOr154 135 212 . KQ414815.1 457174 457405 + 121 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457175 457405 121 + . gene_id 2 ; sequence NvOr154 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457175 457405 . + . KQ414815.1 exonerate:protein2genome:local exon 457175 457405 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457175 457405 121 + . alignment_id 2 ; Query NvOr154 ; Align 457175 136 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr154 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 133 -> 214 Target range: 471567 -> 471810 134 : IleLeuValIleTyrIleSerLeuProLeuLeuProLeuLeuLeuAspValIleAspP : 153 :!!|||:!!! ! !:!!! !||| !!:!!! !||||||:!!||||||:!!||| | LeuLeuIleThrSerValIleLeuSerMetSerProLeuIleLeuAspIleIleIleP 471568 : CTACTCATTACTAGTGTAATACTGTCCATGTCGCCTCTTATTCTCGATATTATAATAC : 471625 154 : roGlnAsnGluThrArgProLysGlnPheProTyrPheAlaGluTyrPheIleAspAs : 172 ||! !||| !:!!||||||::: ! ||||||!:! !!!:!:!.!! !:!!.! roLeuAsnThrSerArgProArgTyrPheProPheThrPheAspPheIleProAsnGl 471626 : CTCTGAACACGTCACGTCCACGTTACTTTCCATTTACGTTCGATTTCATTCCCAATCA : 471682 173 : pGlnLysTyrTyrPheGluLeuThrIleHisGlyTrpIleValCysIleLeuSerVal : 191 .:!!:!!|||!:!! !:!!|||||| !..! ! |||:!!||||||! !.!!:!! nGluGluTyrPhe***ProIleThrIlePheSerGlyIleLeuCysIleCysGlyLeu 471683 : AGAGGAATACTTCTAACCGATTACTATCTTTTCTGGCATATTGTGCATTTGTGGATTA : 471739 192 : GlnIleTyrGlyThrPheAspThrThrTyrThrGlnCysValGlnHisAlaCysGlyL : 211 ! ! !!:! !!!: ! ! !! !..! !||| !|||!.! !!|||| AlaAlaMetIleSerSerGluGlyLeuLeuMetMetAsnValLeuHisValArgGlyL 471740 : GCAGCAATGATAAGTAGCGAGGGTCTGCTTATGATGAATGTTTTACACGTACGTGGAT : 471799 212 : euPheGlyIle : 214 ||!:!..!||| euTyrAsnIle 471800 : TGTATAACATC : 471810 vulgar: NvOr154 133 214 . KQ414815.1 471567 471810 + 120 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471568 471810 120 + . gene_id 3 ; sequence NvOr154 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471568 471810 . + . KQ414815.1 exonerate:protein2genome:local exon 471568 471810 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471568 471810 120 + . alignment_id 3 ; Query NvOr154 ; Align 471568 134 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr150CTE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 132 -> 223 Target range: 457144 -> 457417 133 : LeuTyrLeuValTyrLeuTyrAlaAlaGlyPheAlaPheSerGlnValSerMetValP : 152 :!! ! !|||! ! !|||..!!.!!.!.!.!.!.!!!!! !:!!..!:!: !!| MetIleThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheP 457145 : ATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTC : 457202 153 : roValIleLeuAspTyrIleTrpProLeuAsnGluSerArgProLysIleLeuIleVa : 171 ||:!!:!!|||||| !:!: ||||||||||||||||||||| ||| !:! roIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrLe 457203 : CGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCT : 457259 172 : lHisAlaGluTyrIleIleAspProLeuGlnTyrTyrPheGluLeuTyrGlyAlaTyr : 190 ! |||||||||.!!:!!||| ! !:!!||| ! ! :!! !!.! ! ! uThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIle 457260 : TACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATT : 457316 191 : CysIleLeuThrPheValAsnLeuThrValLeuIleSerIleAspThrAlaPheSerS : 210 !! ! ! !.!.:!! !|||..!|||! !:!!! !!!::!! !.!!! !! IleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleT 457317 : ATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAA : 457376 211 : erIleValTyrGlnAsnLeuGlyValPheSerIleValLys : 223 !!! !||| !!. !! !|||:!!|||!.!:!!..!!:! hrAsnValLeuHisValCysGlyLeuPheLysLeuThrArg 457377 : CGAACGTACTGCACGTTTGTGGATTGTTCAAGCTTACTAGG : 457417 vulgar: NvOr150CTE 132 223 . KQ414815.1 457144 457417 + 104 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457145 457417 104 + . gene_id 1 ; sequence NvOr150CTE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457145 457417 . + . KQ414815.1 exonerate:protein2genome:local exon 457145 457417 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457145 457417 104 + . alignment_id 1 ; Query NvOr150CTE ; Align 457145 133 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr162 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 153 -> 229 Target range: 485701 -> 485929 154 : LeuProSerPheGlyProValIleMetAsnIleLeuLeuProLeuAsnGluThrArgG : 173 ||| !! !|||..! ! !|||:!!:!!||||||:!!||||||||| ! ||||||! LeuGlyIlePheAsnAsnSerIleLeuAspIleLeuIleProLeuAsnTyrThrArgP 485702 : CTTGGTATATTTAACAACAGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTC : 485759 174 : lnLysArgIleProAlaProAlaGluTyrPheValAspGluGluLysTyrPheTyrIl : 192 !::!! !|||||| ! !:!!|||:!!|||||||||:!!:!!|||||||||||| roArgThrIleProIleAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrPr 485760 : CGCGGACGATTCCTATAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCC : 485816 193 : eLeuPheSerHisGlyMetIleLeuTyrMetLeuValCysValLeuTyrValThrIle : 211 !:!! :!!|||! !:!::!!!!! !!!::!!! !...:!!:!!! :!!!:! oIleAlaAlaHisValValLeuPheValIleIleGlyAlaIleValLeuLeuSerThr 485817 : TATTGCAGCACATGTTGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCacc : 485873 212 : AspSerMetTyrSerCysIleValHisHisThrValGlyLeuValGlyIleVal : 229 ::: ::: ...|||:!!!!.|||||| !|||||| ! !|||||| GluIleLeuIleMetAlaIleIleGlnHisThrCysGlyLeuTyrThrIleVal 485874 : gaaatattaattatggCGATAATACAGCACACCTGTGGTTTGTATACAATCGTT : 485929 vulgar: NvOr162 153 229 . KQ414815.1 485701 485929 + 148 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485702 485929 148 + . gene_id 1 ; sequence NvOr162 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485702 485929 . + . KQ414815.1 exonerate:protein2genome:local exon 485702 485929 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485702 485929 148 + . alignment_id 1 ; Query NvOr162 ; Align 485702 154 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr162 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 160 -> 229 Target range: 482031 -> 482238 161 : IleMetAsnIleLeuLeuProLeuAsnGluThrArgGlnLysArgIleProAlaProA : 180 :!!:!::!!:!!:!!:!!|||||||||||||||||| ! ! !:!.!!|||!.! !! ValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerM 482032 : GTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAA : 482089 181 : laGluTyrPheValAspGluGluLysTyrPheTyrIleLeuPheSerHisGlyMetIl : 199 !|||||||||:!!|||:!!:!!||||||! !.!!:!! ! !||| ! !.! etGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPh 482090 : TGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTT : 482146 200 : eLeuTyrMetLeuValCysValLeuTyrValThrIleAspSerMetTyrSerCysIle : 218 !! !!:!:!::!!|||.....!:!! !||| !|||!!:!!!:!! ! ! eSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrp 482147 : TTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGG : 482203 219 : ValHisHisThrValGlyLeuValGlyIleVal : 229 :!!.!.|||.!!!.!.!!||| !! !:!!||| LeuGluHisAlaAlaSerLeuPheThrLeuVal 482204 : CTTGAACACGCTGCAAGCTTGTTCACCCTTGTA : 482238 vulgar: NvOr162 160 229 . KQ414815.1 482031 482238 + 120 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482032 482238 120 + . gene_id 2 ; sequence NvOr162 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482032 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 482032 482238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482032 482238 120 + . alignment_id 2 ; Query NvOr162 ; Align 482032 161 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr162 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 156 -> 229 Target range: 475554 -> 475773 157 : PheGlyProValIleMetAsnIleLeuLeuProLeuAsnGluThrArgGlnLysArgI : 176 |||..! !! !|||:!::!! !||||||||||||||||||:!!|||! !.. !! PheSerSerLysIleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpS 475555 : TTCTCGTCTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGT : 475612 177 : leProAlaProAlaGluTyrPheValAspGluGluLysTyrPheTyrIleLeuPheSe : 195 !! ! |||||||||::::::|||:!!||||||||||||:!: ! ! ! erLeuIleArgIleGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIl 475613 : CTCTGAtacgaatagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGAT : 475669 196 : rHisGlyMetIleLeuTyrMetLeuValCysValLeuTyrValThrIleAspSerMet : 214 !:!! !! :!! ! !:!:||| !! !!..! !||||||.!!! !!!::!!!!: eTyrGlnThrValThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIle 475670 : CTATCAGACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATA : 475726 215 : TyrSerCysIleValHisHisThrValGlyLeuValGlyIleVal : 229 !:!!!! :!!!!.||| !:!:...||| |||||| PheThrMetTrpLeuGlnHisCysIleSerLeuPheGluIleVal 475727 : TTTACCATGTGGTTGCAACATTGCATaagtttatttgaaattgtt : 475773 vulgar: NvOr162 156 229 . KQ414815.1 475554 475773 + 117 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475555 475773 117 + . gene_id 3 ; sequence NvOr162 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475555 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475555 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475555 475773 117 + . alignment_id 3 ; Query NvOr162 ; Align 475555 157 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr162 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 179 -> 238 Target range: 478638 -> 478815 180 : AlaGluTyrPheValAspGluGluLysTyrPheTyrIleLeuPheSerHisGlyMetI : 199 .!!|||||||||:!!||||||:::||||||||| ...:::...||||||! ! : ThrGluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValTyrL 478639 : ACGGAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGTACC : 478696 200 : leLeuTyrMetLeuValCysValLeuTyrValThrIleAspSerMetTyrSerCysIl : 218 !:! !! !!::!! !.....!:!!||||||.!!! !!!:||| ! ! euSerLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMetTr 478697 : TGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTATGTG : 478753 219 : eValHisHisThrValGlyLeuValGlyIleValThrTyrArgLeuGlnAsnIleIle : 237 :!! ||||||:!!|||||| !..!|||:!!! !|||!.!! !|||!..:!:||| pMetValHisThrIleGlyLeuTyrAsnIleIleArgTyrAsnGlnGlnArgLeuIle 478754 : GATGGTGCATACTATCGGCTTGTATAATATCATAAGGTATAATCAGCAAAGATTGATC : 478810 238 : Asp : 238 ||| Asp 478811 : GAT : 478815 vulgar: NvOr162 179 238 . KQ414815.1 478638 478815 + 116 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478639 478815 116 + . gene_id 4 ; sequence NvOr162 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478639 478815 . + . KQ414815.1 exonerate:protein2genome:local exon 478639 478815 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478639 478815 116 + . alignment_id 4 ; Query NvOr162 ; Align 478639 180 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr162 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 158 -> 225 Target range: 457201 -> 457402 159 : ProValIleMetAsnIleLeuLeuProLeuAsnGluThrArgGlnLysArgIleProA : 178 |||:!!:!!:!::!!|||:!!:!!||||||||||||:!!|||! ..!:!! ! ProIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrL 457202 : CCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACC : 457259 179 : laProAlaGluTyrPheValAspGluGluLysTyrPheTyrIleLeuPheSerHisGl : 197 ! !!|||||||||||||||||| !:!!||||||.!.:!! !:!!.!!:!!||| euThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIl 457260 : TTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACAT : 457316 198 : yMetIleLeuTyrMetLeuValCysValLeuTyrValThrIleAspSerMetTyrSer : 216 !!!:! ! ! :!!:!!!.!..!..! !! ..!.!!! !!!:|||:!: !! ! eIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIle 457317 : TATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATA : 457373 217 : CysIleValHisHisThrValGlyLeu : 225 ! !|||! |||..! !|||||| ThrAsnValLeuHisValCysGlyLeu 457374 : ACGAACGTACTGCACGTTTGTGGATTG : 457402 vulgar: NvOr162 158 225 . KQ414815.1 457201 457402 + 109 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457202 457402 109 + . gene_id 5 ; sequence NvOr162 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457202 457402 . + . KQ414815.1 exonerate:protein2genome:local exon 457202 457402 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457202 457402 109 + . alignment_id 5 ; Query NvOr162 ; Align 457202 159 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr162 Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 158 -> 229 Target range: 130376 -> 130163 159 : ProValIleMetAsnIleLeuLeuProLeuAsnGluThrArgGlnLysArgIleProA : 178 ||| !|||:!:..!|||:!!! !||||||!.!|||! !!.! !!.!:!:!!! !! ProGlnIleLeuGlyIleIleSerProLeuThrGluIleAsnThrAsnLysLeuLeuV 130376 : CCGCAAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAACAAATTACTCG : 130319 179 : laProAlaGluTyrPheValAspGluGluLysTyrPheTyrIleLeuPheSerHisGl : 197 .!! !.!!||||||||||||||| ! :!! ! |||.!!|||:!!:!! ! !|||!. alArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAl 130318 : TTCGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGC : 130262 198 : yMetIleLeuTyrMetLeuValCysValLeuTyrValThrIleAspSerMetTyrSer : 216 !! ||| ! |||! ! ! ..!:!! ! :!!!:!! !|||! ::: ::: aThrIleAlaIleMetCysSerValThrMetGlnIleSerSerAspIleLeuAsnAsn 130261 : GACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaataac : 130205 217 : CysIleValHisHisThrValGlyLeuValGlyIleVal : 229 ...::! |||! ! !|||:!! !!! !:!!:!! IlePheMetMetHisIleSerGlyMetPheGluValIle 130204 : atatttatGATGCACATCAGTGGAATGTTCGAGGTAATT : 130164 vulgar: NvOr162 158 229 . KQ414817.1 130376 130163 - 100 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130164 130376 100 - . gene_id 1 ; sequence NvOr162 ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130164 130376 . - . KQ414817.1 exonerate:protein2genome:local exon 130164 130376 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 130164 130376 100 - . alignment_id 1 ; Query NvOr162 ; Align 130377 159 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr157 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 140 Query range: 137 -> 214 Target range: 1243836 -> 1243605 138 : TyrLeuLeuValProPheThrProMetLeuLeuAspLeuIleAspProLeuAsnGl : 156 !:!:!!||| !!|||!!.! !||| :!!||||||:!!:!!...||||||||||| PheValLeuPheProLeuIleProProIleLeuAspValValSerProLeuAsnGl 1243836 : TTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGA : 1243782 157 : uThrArgProLysAlaPheProTyrPheAlaGluTyrPheIleAspAsnGlnLysT : 175 ||||||| !!::! ! :::|||.!..!!|||! :::||| uThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspMetGluLysA 1243781 : GACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACAtggagaaga : 1243725 176 : yrTyrPheGluLeuThrValHisGlyTrpIleIleCysIleLeuSerValGlnIle : 193 ::::::...||| |||:!! ! ! !! .!!:!!!!!:!!..!:!! snPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMetVal 1243724 : atttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTT : 1243671 194 : TyrGlyThrPheAspAlaThrTyrThrGlnLeuValGlnHisSerCysAlaLeuPh : 212 !|||.!.|||||| !|||..! !:!!:!!!!.|||!!!|||!.!||||| IleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGlyLeuPh 1243670 : ATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTTATT : 1243614 213 : eAlaIle : 214 ||||:!! eAlaVal 1243613 : CGCTGTT : 1243606 vulgar: NvOr157 137 214 . KQ414851.1 1243836 1243605 - 140 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243836 140 - . gene_id 1 ; sequence NvOr157 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243836 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243836 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243836 140 - . alignment_id 1 ; Query NvOr157 ; Align 1243837 138 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr157 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 130 -> 214 Target range: 1224285 -> 1224030 131 : LeuAsnValIleLeuValGlyTyrLeuLeuValProPheThrProMetLeuLeuAs : 149 ||| :!!:!!|||:!!! !|||:!! ! !!|||!!.! ! ! !:!!||||| LeuTrpIleValLeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAs 1224285 : TTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGA : 1224231 150 : pLeuIleAspProLeuAsnGluThrArgProLysAlaPheProTyrPheAlaGluT : 168 |:!!:!!! |||||||||||||||||||||::: !.!! ! ! !.!...| pValValAlaProLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerT 1224230 : TGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTT : 1224174 169 : yr<->PheIleAspAsnGlnLysTyrTyrPheGluLeuThrValHisGlyTrpIle : 185 || |||||||||.!. ! :!!:!!!:!!:!...:!!!.! !!||| !!::! ! yrIlePheIleAspGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThr 1224173 : ACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACC : 1224120 186 : IleCysIleLeuSerValGlnIleTyrGlyThrPheAspAlaThrTyrThrGlnLe : 204 ! ! |||! !!!!! !..!!!: !.!! ! ||| ! !|||! ! :! SerValIleSerCysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIl 1224119 : AGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTAT : 1224063 205 : uValGlnHisSerCysAlaLeuPheAlaIle : 214 !:!! ||| !|||!.!|||||||||:!: eIlePheHisLeuCysGlyLeuPheAlaVal 1224062 : CATTTTTCACCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: NvOr157 130 214 . KQ414851.1 1224285 1224030 - 112 M 38 114 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224285 112 - . gene_id 2 ; sequence NvOr157 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224285 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224285 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224285 112 - . alignment_id 2 ; Query NvOr157 ; Align 1224286 131 114 ; Align 1224169 169 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr157 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 133 -> 214 Target range: 1234311 -> 1234065 134 : IleLeuValGlyTyrLeuLeuValProPheThrProMetLeuLeuAspLeuIleAs : 152 .!!:!!|||! !!:!||||||||||||!!...! ! !!!||||||:!!:!! PheMetValValPheLeuLeuValProLeuValPheProPheLeuAspValValLe 1234311 : TTCATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGTCGTCCT : 1234257 153 : pProLeuAsnGluThrArgProLysAlaPheProTyrPheAlaGluTyr<->PheI : 170 !|||||||||||||||||||||::! ! !!:! !.!.!.||| !:!. uProLeuAsnGluThrArgProArgGlnGlnGlyPheArgValAsnTyrLeuTyrP 1234256 : TCCGTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTATATT : 1234200 171 : leAspAsnGlnLysTyrTyrPheGluLeuThrValHisGlyTrpIleIleCysIle : 188 !!|||.!. ! ! |||!:!|||...:!! ! !!!!. ! !...:!! heAspGluAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaVal 1234199 : TCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAGTC : 1234146 189 : LeuSerValGlnIleTyrGlyThrPheAspAlaThrTyrThrGlnLeuValGlnHi : 207 :!! !|||..!||| !||| ! |||:!! !|||! ! !:!!:!!!!.|| ValValValMetIleIleIleThrValAspSerLeuTyrMetIleIleIleHisHi 1234145 : GTTGTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGATAATAATTCACCA : 1234089 208 : sSerCysAlaLeuPheAlaIle : 214 |:!! !!!.!:!!||||||:!: sAlaSerGlyMetPheAlaVal 1234088 : TGCCAGCGGAATGTTCGCCGTG : 1234066 vulgar: NvOr157 133 214 . KQ414851.1 1234311 1234065 - 106 M 35 105 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234066 1234311 106 - . gene_id 3 ; sequence NvOr157 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234066 1234311 . - . KQ414851.1 exonerate:protein2genome:local exon 1234066 1234311 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234066 1234311 106 - . alignment_id 3 ; Query NvOr157 ; Align 1234312 134 105 ; Align 1234204 169 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr157 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 137 -> 214 Target range: 1229464 -> 1229230 138 : TyrLeuLeuValProPheThrProMetLeuLeuAspLeuIleAspProLeuAsnGl : 156 !:!||||||||||||!!. ! ! !||||||:!!:!! !|||! !||||| PheLeuLeuValProLeuPheGlyProAlaLeuAspIleValLeuProSerAsnGl 1229464 : TTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCGTCCTTCCATCAAATGA : 1229410 157 : uThrArgProLysAlaPheProTyrPheAlaGluTyrPheIle<->AspAsnGlnL : 174 ||||||||||::! ! ! !!:! !.!.!.|||.!.||| |||.!. ! uThrArgProArgGlnGlnLeuPheArgValAsnTyrIleIlePheAspGlnAlaA 1229409 : AACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAATTTTCGACCAAGCAG : 1229353 175 : ysTyrTyrPheGluLeuThrValHisGlyTrpIleIleCysIleLeuSerValGln : 192 ! |||!:!||| ! :!! !:!!!!. !!:: ! |||:!! !|||..! spTyrPhePheTyrValTyrIleGlnLeuPheTrpCysThrIleValLeuValMet 1229352 : ACTATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACAATCGTTCTTGTAATG : 1229299 193 : IleTyrGlyThrPheAspAlaThrTyrThrGlnLeuValGlnHisSerCysAlaLe : 211 ! ! !||| ! |||:!! !|||! ! :!!:!! ! |||:!! !!!.!:! AlaIleIleThrValAspSerLeuTyrMetIleIleIleTyrHisAlaSerGlyMe 1229298 : GCCATTATCACCGTAGATTCATTGTACATGATCATAATTTACCATGCCAGCGGAAT : 1229242 212 : uPheAlaIle : 214 !||||||||| tPheAlaIle 1229241 : GTTCGCTATA : 1229231 vulgar: NvOr157 137 214 . KQ414851.1 1229464 1229230 - 101 M 33 99 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229231 1229464 101 - . gene_id 4 ; sequence NvOr157 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229231 1229464 . - . KQ414851.1 exonerate:protein2genome:local exon 1229231 1229464 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229231 1229464 101 - . alignment_id 4 ; Query NvOr157 ; Align 1229465 138 99 ; Align 1229363 171 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr155INT Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 143 Query range: 137 -> 214 Target range: 1243836 -> 1243605 138 : TyrIleThrLeuProLeuAlaProMetLeuLeuAspIleIleAspProLeuAsnGl : 156 !:!:!! !!!!|||||| !||| :!!||||||:!!:!!...||||||||||| PheValLeuPheProLeuIleProProIleLeuAspValValSerProLeuAsnGl 1243836 : TTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGA : 1243782 157 : uThrArgProLysAlaPheProTyrPheAlaGluTyrPheIleAspAspGlnLysT : 175 ||||||| !!::! ! :::|||.!..!!||| :::||| uThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspMetGluLysA 1243781 : GACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACAtggagaaga : 1243725 176 : yrTyrPheGluLeuThrValHisGlyTrpIleValCysIleLeuSerValGlnIle : 193 ::::::...||| |||:!! ! ! !! .!!:!!!!!:!!..!:!! snPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMetVal 1243724 : atttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTT : 1243671 194 : TyrGlyThrPheAspAlaThrTyrThrGlnLeuValGlnHisSerCysAlaLeuPh : 212 !|||.!.|||||| !|||..! !:!!:!!!!.|||!!!|||!.!||||| IleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGlyLeuPh 1243670 : ATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTTATT : 1243614 213 : eAlaIle : 214 ||||:!! eAlaVal 1243613 : CGCTGTT : 1243606 vulgar: NvOr155INT 137 214 . KQ414851.1 1243836 1243605 - 143 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243836 143 - . gene_id 1 ; sequence NvOr155INT ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243836 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243836 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243836 143 - . alignment_id 1 ; Query NvOr155INT ; Align 1243837 138 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr155INT Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 129 -> 214 Target range: 1224288 -> 1224030 130 : SerIleAsnIleIleLeuValGlyTyrIleThrLeuProLeuAlaProMetLeuLe : 148 |||:!: |||:!!|||:!!! !|||!!:!:!!!!|||||| ! ! !:!!|| SerLeuTrpIleValLeuLeuValTyrMetSerPheProLeuIleAsnProValLe 1224288 : tCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTT : 1224234 149 : uAspIleIleAspProLeuAsnGluThrArgProLysAlaPheProTyrPheAlaG : 167 ||||:!!:!!! |||||||||||||||||||||::: !.!! ! ! !.!. uAspValValAlaProLeuAsnGluThrArgProArgArgLeuLeuLeuProValS 1224233 : GGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTA : 1224177 168 : luTyr<->PheIleAspAspGlnLysTyrTyrPheGluLeuThrValHisGlyTrp : 184 ..||| |||||||||!!: ! :!!:!!!:!!:!...:!!!.! !!||| !!:: erTyrIlePheIleAspGluTyrGluHisPheTyrSerValAsnPheHisLeuTyr 1224176 : GTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATAC : 1224123 185 : IleValCysIleLeuSerValGlnIleTyrGlyThrPheAspAlaThrTyrThrGl : 203 ! ! ! |||! !!!!! !..!!!: !.!! ! ||| ! !|||! ! ThrSerValIleSerCysGlyMetMetIleIleAlaValAspMetLeuTyrIleTh 1224122 : ACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATATGTTATACATTAC : 1224066 204 : nLeuValGlnHisSerCysAlaLeuPheAlaIle : 214 :!!:!! ||| !|||!.!|||||||||:!: rIleIlePheHisLeuCysGlyLeuPheAlaVal 1224065 : TATCATTTTTCACCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: NvOr155INT 129 214 . KQ414851.1 1224288 1224030 - 126 M 39 117 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224288 126 - . gene_id 2 ; sequence NvOr155INT ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224288 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224288 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224288 126 - . alignment_id 2 ; Query NvOr155INT ; Align 1224289 130 117 ; Align 1224169 169 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr155INT Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 133 -> 214 Target range: 1234311 -> 1234065 134 : IleLeuValGlyTyrIleThrLeuProLeuAlaProMetLeuLeuAspIleIleAs : 152 .!!:!!|||! !!:!:!: !:!!||||||!.! ! !!!||||||:!!:!! PheMetValValPheLeuLeuValProLeuValPheProPheLeuAspValValLe 1234311 : TTCATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGTCGTCCT : 1234257 153 : pProLeuAsnGluThrArgProLysAlaPheProTyrPheAlaGluTyr<->PheI : 170 !|||||||||||||||||||||::! ! !!:! !.!.!.||| !:!. uProLeuAsnGluThrArgProArgGlnGlnGlyPheArgValAsnTyrLeuTyrP 1234256 : TCCGTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTATATT : 1234200 171 : leAspAspGlnLysTyrTyrPheGluLeuThrValHisGlyTrpIleValCysIle : 188 !!|||!!: ! ! |||!:!|||...:!! ! !!!!. ! ! !...:!! heAspGluAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaVal 1234199 : TCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAGTC : 1234146 189 : LeuSerValGlnIleTyrGlyThrPheAspAlaThrTyrThrGlnLeuValGlnHi : 207 :!! !|||..!||| !||| ! |||:!! !|||! ! !:!!:!!!!.|| ValValValMetIleIleIleThrValAspSerLeuTyrMetIleIleIleHisHi 1234145 : GTTGTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGATAATAATTCACCA : 1234089 208 : sSerCysAlaLeuPheAlaIle : 214 |:!! !!!.!:!!||||||:!: sAlaSerGlyMetPheAlaVal 1234088 : TGCCAGCGGAATGTTCGCCGTG : 1234066 vulgar: NvOr155INT 133 214 . KQ414851.1 1234311 1234065 - 105 M 35 105 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234066 1234311 105 - . gene_id 3 ; sequence NvOr155INT ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234066 1234311 . - . KQ414851.1 exonerate:protein2genome:local exon 1234066 1234311 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234066 1234311 105 - . alignment_id 3 ; Query NvOr155INT ; Align 1234312 134 105 ; Align 1234204 169 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr155INT Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 137 -> 214 Target range: 1229464 -> 1229230 138 : TyrIleThrLeuProLeuAlaProMetLeuLeuAspIleIleAspProLeuAsnGl : 156 !:!:!: !:!!|||||| ! ! !|||||||||:!! !|||! !||||| PheLeuLeuValProLeuPheGlyProAlaLeuAspIleValLeuProSerAsnGl 1229464 : TTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCGTCCTTCCATCAAATGA : 1229410 157 : uThrArgProLysAlaPheProTyrPheAlaGluTyrPheIleAspAspGln<->L : 174 ||||||||||::! ! ! !!:! !.!.!.|||.!.||| !|||||| uThrArgProArgGlnGlnLeuPheArgValAsnTyrIleIlePheAspGlnAlaA 1229409 : AACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAATTTTCGACCAAGCAG : 1229353 175 : ysTyrTyrPheGluLeuThrValHisGlyTrpIleValCysIleLeuSerValGln : 192 ! |||!:!||| ! :!! !:!!!!. !!:: ! |||:!! !|||..! spTyrPhePheTyrValTyrIleGlnLeuPheTrpCysThrIleValLeuValMet 1229352 : ACTATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACAATCGTTCTTGTAATG : 1229299 193 : IleTyrGlyThrPheAspAlaThrTyrThrGlnLeuValGlnHisSerCysAlaLe : 211 ! ! !||| ! |||:!! !|||! ! :!!:!! ! |||:!! !!!.!:! AlaIleIleThrValAspSerLeuTyrMetIleIleIleTyrHisAlaSerGlyMe 1229298 : GCCATTATCACCGTAGATTCATTGTACATGATCATAATTTACCATGCCAGCGGAAT : 1229242 212 : uPheAlaIle : 214 !||||||||| tPheAlaIle 1229241 : GTTCGCTATA : 1229231 vulgar: NvOr155INT 137 214 . KQ414851.1 1229464 1229230 - 100 M 36 108 G 0 3 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229231 1229464 100 - . gene_id 4 ; sequence NvOr155INT ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229231 1229464 . - . KQ414851.1 exonerate:protein2genome:local exon 1229231 1229464 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229231 1229464 100 - . alignment_id 4 ; Query NvOr155INT ; Align 1229465 138 108 ; Align 1229354 174 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr154 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 137 Query range: 135 -> 214 Target range: 1243842 -> 1243605 136 : ValIleTyrIleSerLeuProLeuLeuProLeuLeuLeuAspValIleAspProGl : 154 :!!|||!:!:!!! !!!!||||||:!!|||! !:!!|||||||||:!!...|||! IleIlePheValLeuPheProLeuIleProProIleLeuAspValValSerProLe 1243842 : ATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCT : 1243788 155 : nAsnGluThrArgProLysGlnPheProTyrPheAlaGluTyrPheIleAspAspG : 173 |||||||||||| !!::! ! :::|||.!..!!||| : uAsnGluThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspMetG 1243787 : TAATGAGACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACAtgg : 1243731 174 : lnLysTyrTyrPheGluLeuThrIleHisGlyTrpIleValCysIleLeuSerVal : 191 ::||| ::::::...||| :!!:!! ! ! !! .!!:!!!!!:!! luLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMet 1243730 : agaagaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATG : 1243677 192 : GlnIleTyrGlyThrPheAspThrThrTyrThrGlnCysValGlnHisAlaCysGl : 210 ..!:!! !|||.!.|||.!! !|||..! ! !:!!!!.|||.!!||||| MetValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGl 1243676 : ATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGG : 1243620 211 : yLeuPheGlyIle : 214 |||||||!.!:!! yLeuPheAlaVal 1243619 : CTTATTCGCTGTT : 1243606 vulgar: NvOr154 135 214 . KQ414851.1 1243842 1243605 - 137 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243842 137 - . gene_id 1 ; sequence NvOr154 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243842 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243842 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243842 137 - . alignment_id 1 ; Query NvOr154 ; Align 1243843 136 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr154 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 133 Query range: 132 -> 214 Target range: 1224279 -> 1224030 133 : IleIleLeuValIleTyrIleSerLeuProLeuLeuProLeuLeuLeuAspValIl : 151 |||:!!|||:!!:!!|||!!:|||!!!||||||:!! !! !:!!|||||||||:! IleValLeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAspValVa 1224279 : ATAGTTCTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGT : 1224225 152 : eAspProGlnAsnGluThrArgProLysGlnPheProTyrPheAlaGluTyr<->P : 169 !! ||| !|||||||||||||||:::::!.!! ! ! !.!...||| | lAlaProLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIleP 1224224 : TGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATAT : 1224168 170 : heIleAspAspGlnLysTyrTyrPheGluLeuThrIleHisGlyTrpIleValCys : 187 ||||||||!!: ! :!!:!!!:!!:!...:!!!.!.!!||| !!::! ! ! heIleAspGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerVal 1224167 : TCATAGACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTG : 1224114 188 : IleLeuSerValGlnIleTyrGlyThrPheAspThrThrTyrThrGlnCysValGl : 206 |||! !!!!! !..!!!: !.!! ! |||! ! !|||! ! !:!! IleSerCysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePh 1224113 : ATTTCCTGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTT : 1224057 207 : nHisAlaCysGlyLeuPheGlyIle : 214 ||| !||||||||||||!.!:!: eHisLeuCysGlyLeuPheAlaVal 1224056 : TCACCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: NvOr154 132 214 . KQ414851.1 1224279 1224030 - 133 M 36 108 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224279 133 - . gene_id 2 ; sequence NvOr154 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224279 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224279 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224279 133 - . alignment_id 2 ; Query NvOr154 ; Align 1224280 133 108 ; Align 1224169 169 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr154 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 133 -> 214 Target range: 1234311 -> 1234065 134 : IleLeuValIleTyrIleSerLeuProLeuLeuProLeuLeuLeuAspValIleAs : 152 .!!:!!|||:!!!:!:!: !:!!||||||:!! !! !!!!|||||||||:!! PheMetValValPheLeuLeuValProLeuValPheProPheLeuAspValValLe 1234311 : TTCATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGTCGTCCT : 1234257 153 : pProGlnAsnGluThrArgProLysGlnPheProTyrPheAlaGluTyr<->PheI : 170 !||| !|||||||||||||||::!||| !!:! !.!.!.||| !:!. uProLeuAsnGluThrArgProArgGlnGlnGlyPheArgValAsnTyrLeuTyrP 1234256 : TCCGTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTATATT : 1234200 171 : leAspAspGlnLysTyrTyrPheGluLeuThrIleHisGlyTrpIleValCysIle : 188 !!|||!!: ! ! |||!:!|||...:!! !.!!!!. ! ! !...:!! heAspGluAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaVal 1234199 : TCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAGTC : 1234146 189 : LeuSerValGlnIleTyrGlyThrPheAspThrThrTyrThrGlnCysValGlnHi : 207 :!! !|||..!||| !||| ! |||:!! !|||! ! ! :!!!!.|| ValValValMetIleIleIleThrValAspSerLeuTyrMetIleIleIleHisHi 1234145 : GTTGTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGATAATAATTCACCA : 1234089 208 : sAlaCysGlyLeuPheGlyIle : 214 |||| !!|||:!!|||!.!:!: sAlaSerGlyMetPheAlaVal 1234088 : TGCCAGCGGAATGTTCGCCGTG : 1234066 vulgar: NvOr154 133 214 . KQ414851.1 1234311 1234065 - 114 M 35 105 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234066 1234311 114 - . gene_id 3 ; sequence NvOr154 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234066 1234311 . - . KQ414851.1 exonerate:protein2genome:local exon 1234066 1234311 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234066 1234311 114 - . alignment_id 3 ; Query NvOr154 ; Align 1234312 134 105 ; Align 1234204 169 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr154 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 134 -> 214 Target range: 1229473 -> 1229230 135 : LeuValIleTyrIleSerLeuProLeuLeuProLeuLeuLeuAspValIleAspPr : 153 :!! !:!!!:!:!: !:!!||||||!!! !! ! !||||||:!!:!! !|| MetCysValPheLeuLeuValProLeuPheGlyProAlaLeuAspIleValLeuPr 1229473 : ATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCGTCCTTCC : 1229419 154 : oGlnAsnGluThrArgProLysGlnPheProTyrPheAlaGluTyrPheIleAspA : 172 |..!|||||||||||||||::!||| ! !!:! !.!.!.|||.!.||| !| oSerAsnGluThrArgProArgGlnGlnLeuPheArgValAsnTyrIleIlePheA 1229418 : ATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAATTTTCG : 1229362 173 : spGln<->LysTyrTyrPheGluLeuThrIleHisGlyTrpIleValCysIleLeu : 189 ||||| ! |||!:!||| ! :!! !|||!!. !!:: ! |||:!! spGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPheTrpCysThrIleVal 1229361 : ACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACAATCGTT : 1229308 190 : SerValGlnIleTyrGlyThrPheAspThrThrTyrThrGlnCysValGlnHisAl : 208 !|||..! ! ! !||| ! |||:!! !|||! ! :!! ! ||||| LeuValMetAlaIleIleThrValAspSerLeuTyrMetIleIleIleTyrHisAl 1229307 : CTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGATCATAATTTACCATGC : 1229251 209 : aCysGlyLeuPheGlyIle : 214 | !!|||:!!|||!.!||| aSerGlyMetPheAlaIle 1229250 : CAGCGGAATGTTCGCTATA : 1229231 vulgar: NvOr154 134 214 . KQ414851.1 1229473 1229230 - 114 M 39 117 G 0 3 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229231 1229473 114 - . gene_id 4 ; sequence NvOr154 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229231 1229473 . - . KQ414851.1 exonerate:protein2genome:local exon 1229231 1229473 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229231 1229473 114 - . alignment_id 4 ; Query NvOr154 ; Align 1229474 135 117 ; Align 1229354 174 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr158 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 136 Query range: 133 -> 220 Target range: 1243863 -> 1243605 134 : GlyAlaAlaTyrGlyAlaLeuIleValTyrValSerThrProIleIleValProAs : 152 |||.!! !!:! ! !! !|||:!!!:!|||! ! !|||:!!||| ||| GlyThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIle---ProPr 1243863 : GGTACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATT---CCGCC : 1243812 153 : nValLeuAspValValIleProLeuAsnGluSerArgAlaLysThrPheProTyrP : 171 :!!|||||||||||| !||||||||||||!!!|||:!!::!! ! oIleLeuAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleL 1243811 : AATATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataa : 1243755 172 : heIleGluTyrPheIleAspThrGluValTyrTyrTyrGlnLeuMetAlaHisGly : 189 ::::::|||.!..!!|||! ||| :::|||...||| !.!:!! ! ysLeuGlnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThr 1243754 : aattgcaataccTGTTCGACAtggagaagaatttttattcattatacGTCTACACT : 1243701 190 : ThrLeuCysPheThrIleSerAlaLeuValTyrValSerIleAspThrMetTyrAl : 208 !! !|||! !!!:!!! !:!!||| :!!!!!||||||.!!:!:|||!. GlyTrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrVa 1243700 : GGCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGT : 1243644 209 : aThrCysSerGlnHisLeuCysSerLeuPheAspVal : 220 !..! !! !!!.||| !|||.!!||||||! !||| lValIleIleHisHisThrCysGlyLeuPheAlaVal 1243643 : GGTAATCATTCATCACACGTGTGGCTTATTCGCTGTT : 1243606 vulgar: NvOr158 133 220 . KQ414851.1 1243863 1243605 - 136 M 16 48 G 1 0 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243863 136 - . gene_id 1 ; sequence NvOr158 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243863 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243863 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243863 136 - . alignment_id 1 ; Query NvOr158 ; Align 1243864 134 48 ; Align 1243816 151 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr158 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 130 -> 220 Target range: 1224300 -> 1224030 131 : LeuTyrMetGlyAlaAlaTyrGlyAlaLeuIleValTyrValSerThrProIleIl : 149 :::::: :!! !!:: !!.!|||:!!||||||:!!||| !|||:!:|| IlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLeuIl 1224300 : attttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGAT : 1224246 150 : eValProAsnValLeuAspValValIleProLeuAsnGluSerArgAlaLysThrP : 168 | !||| ||||||||||||||| ||||||||||||!!!||| !!:::! !. eAsnPro---ValLeuAspValValAlaProLeuAsnGluThrArgProArgArgL 1224245 : AAATCCG---GTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGC : 1224192 169 : heProTyrPheIleGluTyr<->PheIleAspThrGluValTyrTyrTyrGlnLeu : 185 !! ! ! :!!...||| ||||||||| ! ! ! !:!!!:!|||...:!! euLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerVal 1224191 : TTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTG : 1224138 186 : MetAlaHisGlyThrLeuCysPheThrIleSerAlaLeuValTyrValSerIleAs : 204 ! !||| ! ! ! !! ! ! ! !!!!!.!:!!:!! :!!:!!:!:|| AsnPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAs 1224137 : AATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGA : 1224081 205 : pThrMetTyrAlaThrCysSerGlnHisLeuCysSerLeuPheAspVal : 220 |! !:!:||| !||| !! ! |||||||||.!!||||||! ||| pMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaVal 1224080 : TATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: NvOr158 130 220 . KQ414851.1 1224300 1224030 - 122 M 21 63 G 1 0 M 22 66 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224300 122 - . gene_id 2 ; sequence NvOr158 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224300 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224300 . - . insertions 3 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224300 122 - . alignment_id 2 ; Query NvOr158 ; Align 1224301 131 63 ; Align 1224238 153 66 ; Align 1224169 175 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr158 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 336 -> 382 Target range: 1242808 -> 1242670 337 : MetAsnSerAlaTyrPheSerGluTrpTyrAsnLeuProLeuGluAlaLysLysLe : 355 ......!:! !||| !||| !||||||.!. !|||:!! ! !:!!|||:! PheThrAsnArgTyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIl 1242808 : tttaccAATAGATATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAAT : 1242754 356 : uIleGlnIleIleIleHisArgSerSerIleProCysLysPheThrAlaGlyGlyI : 374 !:!!!!.|||:!! ! ||||||.!!! !|||||||||!!...!|||||||||: eLeuHisIleValGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyL 1242753 : ACTTCATATAGTACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGAT : 1242697 375 : leValValLeuAsnValGluAsnPhe : 382 !! !! !:!!|||:!!||||||||| euTyrGluMetAsnIleGluAsnPhe 1242696 : TATACGAAATGAACATTGAGAATTTT : 1242671 vulgar: NvOr158 336 382 . KQ414851.1 1242808 1242670 - 108 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242671 1242808 108 - . gene_id 3 ; sequence NvOr158 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1242671 1242808 . - . KQ414851.1 exonerate:protein2genome:local exon 1242671 1242808 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242671 1242808 108 - . alignment_id 3 ; Query NvOr158 ; Align 1242809 337 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr161 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 147 Query range: 291 -> 378 Target range: 1222711 -> 1222379 292 : LeuMetLysThrAspArgProGluGluLeuLeuArgTyrPheThrValLeuPheAl : 310 :!!|||!!.! !|||||||||!!:||||||:!!||| ! ! ! !!:!! ! || IleMetAsnIleAspArgProAspGluLeuIleArgLeuAlaMetPheValValAl 1222711 : ATTATGAACATCGACCGACCTGACGAACTCATCAGGCTTGCGATGTTTGTCGTAGc : 1222657 311 : aGlyPheIleHisPheTyrTyrIlePheLeuProGlyGlnLysIleIleAsnSerS : 329 | ...|||... !:!! !||||||||||||! !:!::!!:!! !| aGlnLysPheHisLeuLeuIleLeuSerLeuProGlyGlnMetLeuLeuAspHisS 1222656 : tcagaaatttcatttgctcATCCTTAGTTTACCTGGGCAAATGTTGTTAGATCATA : 1222600 330 : erLeuGluValPheAspLys{Cy} >>>> Target Intron 1 >>>> {s} : 336 |||||! !:!! !|||! !{ } 71 bp {!} erLeuGlyLeuAlaAspIle{Il}++ ++{e} 1222599 : GTTTAGGATTGGCCGATATA{AT}gt.........................ag{T} : 1222506 337 : TyrAlaSerArgTrpTyrAsnLeuSerGluLysSerLysSerLeuIleLysIleMe : 355 |||||||||!:!||||||.!.||| !!! !|||.!!:!!!.!|||||| ! ! || TyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTyrThrMe 1222505 : TACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTACACGAT : 1222451 356 : tMetIleArgSerLeuArgArgCysGluLeuThrGlyGlyLysMetPheIleLeuC : 374 |...!!:||||||:!!|||! !||| !||||||!.!||| !:!! ! :!! tGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisGluMetA 1222450 : GCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATGAGATGA : 1222394 375 : ysMetAspThrTyr : 378 !!!:!!:!:!!:! snIleGluSerPhe 1222393 : ACATCGAGAGTTTC : 1222380 vulgar: NvOr161 291 378 . KQ414851.1 1222711 1222379 - 147 M 44 132 S 0 2 5 0 2 I 0 67 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222380 1222711 147 - . gene_id 1 ; sequence NvOr161 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1222578 1222711 . - . KQ414851.1 exonerate:protein2genome:local exon 1222578 1222711 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1222576 1222577 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222507 1222577 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1222507 1222508 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222380 1222506 . - . KQ414851.1 exonerate:protein2genome:local exon 1222380 1222506 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222380 1222711 147 - . alignment_id 1 ; Query NvOr161 ; Align 1222712 292 132 ; Align 1222506 337 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr152PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 200 Query range: 159 -> 247 Target range: 1222687 -> 1222352 160 : AspLeuIleArgLeuAlaLeuPheValIleGlySerLeuValHisPheLeuPheIl : 178 !!:|||||||||||||||:!!||||||:!!!..... |||...|||.!!:! GluLeuIleArgLeuAlaMetPheValValAlaGlnLysPheHisLeuLeuIleLe 1222687 : GAACTCATCAGGCTTGCGATGTTTGTCGTAGctcagaaatttcatttgctcATCCT : 1222633 179 : eSerTrpProGlyGlnLeuValIleAspHisSerAsnAspLeuPheValSer{Va} : 196 !|||! |||||||||:!!:!!:!!||||||||| ! ||| !! !! !{:!} uSerLeuProGlyGlnMetLeuLeuAspHisSerLeuGlyLeuAlaAspIle{Il} 1222632 : TAGTTTACCTGGGCAAATGTTGTTAGATCATAGTTTAGGATTGGCCGATATA{AT} : 1222579 197 : >>>> Target Intron 1 >>>> {l}TyrAlaAsnGluTrpTyrValIle : 204 71 bp {!}||||||::!:!!||||||! !:!! ++ ++{e}TyrAlaSerLysTrpTyrGluLeu 1222578 : gt.........................ag{T}TACGCTTCTAAATGGTACGAACTA : 1222484 205 : SerAlaArgAlaLysThrLeuLeuLysIleValMetLeuArgCysIleLysProCy : 223 !!!.!!:!!.!:!!! !|||:!! ! ! :!!...:!!|||! !|||::!||||| ProValLysGlyGlnLysLeuIleTyrThrMetGlnMetArgSerIleArgProCy 1222483 : CCGGTAAAAGGGCAAAAGTTGATTTACACGATGCAAATGAGGTCCATACGGCCATG : 1222427 224 : sIleLeuThrAlaGlyGlyLeuTyrValMetSerLeuGluAsnPheGlyValIleL : 242 |||||||||||||||||||:!!:!!! !|||!:!:!!|||!:!||||||:!!:!!! sIleLeuThrAlaGlyGlyValHisGluMetAsnIleGluSerPheGlyIleValC 1222426 : TATATTAACAGCAGGAGGAGTGCATGAGATGAACATCGAGAGTTTCGGAATAGTAT : 1222370 243 : euLysSerAlaLeuSer : 247 !!!.!:! !:!!!:! ysAsnAsnMetIleAsn 1222369 : GTAATAATATGATAAAT : 1222353 vulgar: NvOr152PSE 159 247 . KQ414851.1 1222687 1222352 - 200 M 36 108 S 0 2 5 0 2 I 0 67 3 0 2 S 1 1 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222353 1222687 200 - . gene_id 1 ; sequence NvOr152PSE ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1222578 1222687 . - . KQ414851.1 exonerate:protein2genome:local exon 1222578 1222687 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1222576 1222577 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222507 1222577 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1222507 1222508 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222353 1222506 . - . KQ414851.1 exonerate:protein2genome:local exon 1222353 1222506 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222353 1222687 200 - . alignment_id 1 ; Query NvOr152PSE ; Align 1222688 160 108 ; Align 1222506 197 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr152PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 165 Query range: 8 -> 85 Target range: 1243836 -> 1243605 9 : PheCysGlnIleProMetIleProIleValLeuAspLeuIleMetProLeuAsnGl : 27 ||| !.!!|||:!:|||||| !:!!||||||:!!:!! ||||||||||| PheValLeuPheProLeuIleProProIleLeuAspValValSerProLeuAsnGl 1243836 : TTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGA : 1243782 28 : uSerArgProLysIleLeuPheValLysGlyGluTyrIleIleAspProPheLysH : 46 |!!!||| !!::!||| :::||| :::|||:!:.!!||| |||: uThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspMetGluLysA 1243781 : GACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACAtggagaaga : 1243725 47 : isPheTyrLysLeuTyrValTyrPheAlaIleThrSerLeuThrThrValThrVal : 64 ::||||||...|||||||||||| !!.! !|||!!!! !|||:!!! !||| snPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMetVal 1243724 : atttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTT : 1243671 65 : ValSerAlaIleAspThrThrTyrThrAlaCysValHisGlnIleLeuAlaIlePh : 83 :!!! !.!!||||||.!! !|||..!!.! !:!!|||!!.! ! !!.!:!!|| IleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGlyLeuPh 1243670 : ATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTTATT : 1243614 84 : eSerIle : 85 |:!!:!! eAlaVal 1243613 : CGCTGTT : 1243606 vulgar: NvOr152PSE 8 85 . KQ414851.1 1243836 1243605 - 165 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243836 165 - . gene_id 2 ; sequence NvOr152PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243836 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243836 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243836 165 - . alignment_id 2 ; Query NvOr152PSE ; Align 1243837 9 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr152PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 196 -> 238 Target range: 1228545 -> 1228419 197 : TyrAlaAsnGluTrpTyrValIleSerAlaArgAlaLysThrLeuLeuLysIleVa : 215 |||:!!::! !|||||| !:!!||||||!:! !:!! !:!!:!! ! !!::! TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 216 : lMetLeuArgCysIleLysProCysIleLeuThrAlaGlyGlyLeuTyrValMetS : 234 !...:!!|||..!:!!|||||||||||||||||||||||||||||||||! !|||! tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 235 : erLeuGluAsnPhe : 238 :!:!!||||||||| snMetGluAsnPhe 1228433 : ACATGGAGAACTTT : 1228420 vulgar: NvOr152PSE 196 238 . KQ414851.1 1228545 1228419 - 131 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228420 1228545 131 - . gene_id 3 ; sequence NvOr152PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228420 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228420 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228420 1228545 131 - . alignment_id 3 ; Query NvOr152PSE ; Align 1228546 197 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr152PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 196 -> 238 Target range: 1233381 -> 1233255 197 : TyrAlaAsnGluTrpTyrValIleSerAlaArgAlaLysThrLeuLeuLysIleVa : 215 |||:!!::! !|||||| !:!! !!|||!:! !:!! !:!!:!! ! ! :! TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMe 1233381 : TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGAT : 1233327 216 : lMetLeuArgCysIleLysProCysIleLeuThrAlaGlyGlyLeuTyrValMetS : 234 !...:!!|||..!:!!|||||||||:!!|||||||||||||||||||||! !|||! tGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetA 1233326 : GCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGA : 1233270 235 : erLeuGluAsnPhe : 238 :!:!!||||||||| snMetGluAsnPhe 1233269 : ACATGGAGAACTTT : 1233256 vulgar: NvOr152PSE 196 238 . KQ414851.1 1233381 1233255 - 123 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233256 1233381 123 - . gene_id 4 ; sequence NvOr152PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1233256 1233381 . - . KQ414851.1 exonerate:protein2genome:local exon 1233256 1233381 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233256 1233381 123 - . alignment_id 4 ; Query NvOr152PSE ; Align 1233382 197 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr152PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 1 -> 85 Target range: 1224285 -> 1224030 2 : MetMetIleAlaGlyLeuGlyPheCysGlnIleProMetIleProIleValLeuAs : 20 :!! !|||!.! !|||! !!:! ....!!|||:!!||| ! |||||||| LeuTrpIleValLeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAs 1224285 : TTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGA : 1224231 21 : pLeuIleMetProLeuAsnGluSerArgProLysIleLeuPheValLysGlyGluT : 39 |:!!:!! !||||||||||||!!!||||||:::! |||!!.:!! !! !...| pValValAlaProLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerT 1224230 : TGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTT : 1224174 40 : yrIle<->IleAspProPheLysHisPheTyrLysLeuTyrValTyrPheAlaIle : 56 ||||| |||||| !!:!:!!|||||||||!..:!! !! !!:!!.!. !! ! yrIlePheIleAspGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThr 1224173 : ACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACC : 1224120 57 : ThrSerLeuThrThrValThrValValSerAlaIleAspThrThrTyrThrAlaCy : 75 !:! !:!!:!! !! !! !:!!:!!! !|||:!:|||! ! !|||! !.!! SerValIleSerCysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIl 1224119 : AGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTAT : 1224063 76 : sValHisGlnIleLeuAlaIlePheSerIle : 85 !:!! !!!.:!!! !!.!:!:|||:!!:!: eIlePheHisLeuCysGlyLeuPheAlaVal 1224062 : CATTTTTCACCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: NvOr152PSE 1 85 . KQ414851.1 1224285 1224030 - 118 M 39 117 G 0 3 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224285 118 - . gene_id 5 ; sequence NvOr152PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224285 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224285 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224285 118 - . alignment_id 5 ; Query NvOr152PSE ; Align 1224286 2 117 ; Align 1224166 41 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr152PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 8 -> 85 Target range: 1234299 -> 1234065 9 : PheCysGlnIleProMetIleProIleValLeuAspLeuIleMetProLeuAsnGl : 27 ||| ! !:!!|||:!::!! ! ! !!||||||:!!:!!:!:||||||||||| PheLeuLeuValProLeuValPheProPheLeuAspValValLeuProLeuAsnGl 1234299 : TTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGTCGTCCTTCCGTTAAATGA : 1234245 28 : uSerArgProLysIleLeuPheValLysGlyGluTyrIle<->IleAspProPheL : 45 |!!!||||||::! ! ! !!!:!! !.!.|||:!! .!!||| ! uThrArgProArgGlnGlnGlyPheArgValAsnTyrLeuTyrPheAspGluAlaA 1234244 : AACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTATATTTCGACGAAGCGG : 1234188 46 : ysHisPheTyrLysLeuTyrValTyrPheAlaIleThrSerLeuThrThrValThr : 63 ! :!!|||!:!!..:!!||| !! ! !!.||| !:!!:!!..!..!|||! ! spTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaValValValValMet 1234187 : ACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATG : 1234134 64 : ValValSerAlaIleAspThrThrTyrThrAlaCysValHisGlnIleLeuAlaIl : 82 :!!:!!! !.!!:!!|||:!! !|||! ! ! :!!|||!!. ! !!.!!! IleIleIleThrValAspSerLeuTyrMetIleIleIleHisHisAlaSerGlyMe 1234133 : ATCATAATCACCGTAGACTCGTTGTACATGATAATAATTCACCATGCCAGCGGAAT : 1234077 83 : ePheSerIle : 85 :|||:!!:!: tPheAlaVal 1234076 : GTTCGCCGTG : 1234066 vulgar: NvOr152PSE 8 85 . KQ414851.1 1234299 1234065 - 103 M 32 96 G 0 3 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234066 1234299 103 - . gene_id 6 ; sequence NvOr152PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234066 1234299 . - . KQ414851.1 exonerate:protein2genome:local exon 1234066 1234299 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234066 1234299 103 - . alignment_id 6 ; Query NvOr152PSE ; Align 1234300 9 96 ; Align 1234201 41 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr162 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 158 -> 228 Target range: 1243815 -> 1243605 159 : ProValIleMetAsnIleLeuLeuProLeuAsnGluThrArgGlnLysArgIlePr : 177 ||| !|||:!!:!!:!!:!!! !||||||||||||||||||...::!! ! ProProIleLeuAspValValSerProLeuAsnGluThrArgSerArgIleGluVa 1243815 : CCGCCAATATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagt : 1243761 178 : oAlaProAlaGluTyrPheValAspGluGluLysTyrPheTyrIleLeuPheSerH : 196 :::|||.!. !!||| |||||| |||||| |||::: !: lIleLysLeuGlnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrValT 1243760 : aataaaattgcaataccTGTTCGACAtggagaagaatttttattcattatacGTCT : 1243704 197 : isGlyMetIleLeuTyrMetLeuValCysValLeuTyrValThrIleAspSerMet : 214 !! ! ! !! .!.:!!..! :!!:!! :!!|||||||||:!!:!: yrThrGlyTrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeu 1243703 : ACACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTA : 1243650 215 : TyrSerCysIleValHisHisThrValGlyLeuValGlyIle : 228 ||| ! |||:!!||||||||| !|||||| !!!.!:!! TyrValValIleIleHisHisThrCysGlyLeuPheAlaVal 1243649 : TATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCTGTT : 1243606 vulgar: NvOr162 158 228 . KQ414851.1 1243815 1243605 - 130 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243815 130 - . gene_id 1 ; sequence NvOr162 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243815 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243815 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243815 130 - . alignment_id 1 ; Query NvOr162 ; Align 1243816 159 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr162 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 356 -> 407 Target range: 1228524 -> 1228296 357 : IleSerThrSerAsnLysArgIleIleGlnIleMetMetIleArgCysLeuArgPr : 375 :!!|||.!!!.! !:!!|||:!!||| ! !!:|||...||||||..!|||!:!|| ValSerAlaLysPheGlnArgValIleTyrMetMetGlnIleArgAlaLeuLysPr 1228524 : GTATCGGCAAAATTTCAACGAGTAATTTACATGATGCAAATAAGGGCTCTAAAGCC : 1228470 376 : oCysGlnLeuThrAlaGlyGlyLeuLeuValLeuAsnMetPheAsnPheGlyAla : 394 |||| ||||||||||||||||||! !! !:!!|||||| ||||||!.! ! oCysIleLeuThrAlaGlyGlyLeuTyrGluMetAsnMetGluAsnPheAlaAsn+ 1228469 : GTGTATTTTGACTGCAGGTGGATTGTACGAAATGAACATGGAGAACTTTGCAAACg : 1228413 395 : >>>> Target Intron 1 >>>> IleValLysThrSerPheSerTyrIleT : 403 75 bp ! ! !!||||||!!!.!.||||||.!!| + ++ThrPheLysThrCysMetSerTyrPheT 1228412 : t.........................agACATTCAAAACGTGCATGTCGTACTTCA : 1228311 404 : hrMetLeuLeuSer : 407 ||||||||:!!||| hrMetLeuMetSer 1228310 : CAATGCTGATGTCA : 1228297 vulgar: NvOr162 356 407 . KQ414851.1 1228524 1228296 - 117 M 37 111 5 0 2 I 0 71 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228297 1228524 117 - . gene_id 2 ; sequence NvOr162 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1228414 1228524 . - . KQ414851.1 exonerate:protein2genome:local exon 1228414 1228524 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228412 1228413 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1228339 1228413 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1228339 1228340 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228297 1228338 . - . KQ414851.1 exonerate:protein2genome:local exon 1228297 1228338 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228297 1228524 117 - . alignment_id 2 ; Query NvOr162 ; Align 1228525 357 111 ; Align 1228339 394 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr162 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 327 -> 408 Target range: 1233447 -> 1233129 328 : PheAsnSerAsnProGlyGlnAsnLeuPheAspLysThrSerGluIleIleAsnTh : 346 ||||||!:! ! !! !! !!.! !||| :!!!:! ! .!!|||:!!! PheAsnAsnValAsnAspProLysHisPheThrCysSerAsnTyrPheIleAspIl 1233447 : TTTAATAACGTCAATGATCCCAAACATTTTACGTGCTCGAATTATTTTATCGATAT : 1233393 347 : rLeuTyrPheThrAlaTrpTyrAspSerGlyIleSerThrSerAsnLysArgIleI : 365 !|||||| !:!!! ! ! !:!! !!.!!!.! !:!!|||:!!| eLeuTyrArgTyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValI 1233392 : TCTTTACAGATACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAA : 1233336 366 : leGlnIleMetMetIleArgCysLeuArgProCysGlnLeuThrAlaGlyGlyLeu : 383 || ! ! |||...||||||..!|||!:!|||||| |||||||||||||||||| leTyrThrMetGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeu 1233335 : TTTACACGATGCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTG : 1233282 384 : LeuValLeuAsnMetPheAsnPheGlyAla >>>> Target Intron 1 >>> : 394 ! !! !:!!|||||| ||||||!.! ! 75 bp TyrGluMetAsnMetGluAsnPheAlaAsn++ 1233281 : TATGAAATGAACATGGAGAACTTTGCAAACgt........................ : 1233247 395 : > IleValLysThrSerPheSerTyrIleThrMetLeuLeuSerVal : 408 ! !!||||||!!!.!.||||||.!!|||||||||:!!|||:!! ++ThrPheLysThrCysMetSerTyrPheThrMetLeuMetSerLeu 1233246 : .agaCATTCAAAACGTGCATGTCATACTTCACAATGCTGATGTCACTT : 1233130 vulgar: NvOr162 327 408 . KQ414851.1 1233447 1233129 - 116 M 66 198 5 0 2 I 0 71 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233130 1233447 116 - . gene_id 3 ; sequence NvOr162 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233250 1233447 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233447 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233130 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233130 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233130 1233447 116 - . alignment_id 3 ; Query NvOr162 ; Align 1233448 328 198 ; Align 1233175 394 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr162 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 144 -> 228 Target range: 1229482 -> 1229230 145 : ValPheAlaLeuSerSerTyrAlaCysLeuProSerPheGlyProValIleMetAs : 163 :!!||||||:!!!!! !!:! ! :!!|||! !|||||||||!.! :!!:! LeuPheAlaMetCysValPheLeuLeuValProLeuPheGlyProAla---LeuAs 1229482 : CTCTTCGCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCC---CTGGA : 1229431 164 : nIleLeuLeuProLeuAsnGluThrArgGlnLysArgIleProAlaProAlaGluT : 182 !|||:!!||||||! !||||||||||||! !::!!:! !! ! ! !!.!.!.| pIleValLeuProSerAsnGluThrArgProArgGlnGlnLeuPheArgValAsnT 1229430 : CATCGTCCTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACT : 1229374 183 : yrPheVal<->AspGluGluLysTyrPheTyrIleLeuPheSerHisGlyMetIle : 199 ||.!.:!! |||:!!! ! ! ||||||!:! !:!!!:!! !!!. !.!. yrIleIlePheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPheTrp 1229373 : ATATAATTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTTTGG : 1229320 200 : LeuTyrMetLeuValCysValLeuTyrValThrIleAspSerMetTyrSerCysIl : 218 ! ! !!::!!:!! :!! ! !:!!|||:!!||||||:!!|||! ! !|| CysThrIleValLeuValMetAlaIleIleThrValAspSerLeuTyrMetIleIl 1229319 : TGTACAATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGATCAT : 1229263 219 : eValHisHisThrValGlyLeuValGlyIle : 228 |:!!:!!|||.!! !|||:!! !!!.!||| eIleTyrHisAlaSerGlyMetPheAlaIle 1229262 : AATTTACCATGCCAGCGGAATGTTCGCTATA : 1229231 vulgar: NvOr162 144 228 . KQ414851.1 1229482 1229230 - 108 M 16 48 G 1 0 M 23 69 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229231 1229482 108 - . gene_id 4 ; sequence NvOr162 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229231 1229482 . - . KQ414851.1 exonerate:protein2genome:local exon 1229231 1229482 . - . insertions 3 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1229231 1229482 108 - . alignment_id 4 ; Query NvOr162 ; Align 1229483 145 48 ; Align 1229435 162 69 ; Align 1229363 185 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr162 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 160 -> 228 Target range: 1224237 -> 1224030 161 : IleMetAsnIleLeuLeuProLeuAsnGluThrArgGlnLysArgIleProAlaPr : 179 :!!:!!:!!:!!:!! !||||||||||||||||||! :::|||:!! ! !|| ValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLeuLeuLeuPr 1224237 : GTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCC : 1224183 180 : oAlaGluTyr<->PheValAspGluGluLysTyrPheTyrIleLeuPheSerHisG : 197 |!.!...||| |||:!!|||||| ! :!!:!!||||||! !:!! !! !||| oValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValAsnPheHisL 1224182 : AGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAATTTTCACC : 1224126 198 : lyMetIleLeuTyrMetLeuValCysValLeuTyrValThrIleAspSerMetTyr : 215 ! ! ! ! !!:! ! ! ! :!!:!! :!!.!!:!:|||! !:!:||| euTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAspMetLeuTyr 1224125 : TATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATATGTTATAC : 1224072 216 : SerCysIleValHisHisThrValGlyLeuValGlyIle : 228 ! ! !|||:!! !||| ! !|||||| !!!.!:!: IleThrIleIlePheHisLeuCysGlyLeuPheAlaVal 1224071 : ATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: NvOr162 160 228 . KQ414851.1 1224237 1224030 - 106 M 22 66 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224237 106 - . gene_id 5 ; sequence NvOr162 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224237 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224237 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224237 106 - . alignment_id 5 ; Query NvOr162 ; Align 1224238 161 66 ; Align 1224169 183 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr162 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 160 -> 228 Target range: 1234272 -> 1234065 161 : IleMetAsnIleLeuLeuProLeuAsnGluThrArgGlnLysArgIleProAlaPr : 179 .!!:!!:!!:!!:!!|||||||||||||||||||||! !::!!:! ! ! ! PheLeuAspValValLeuProLeuAsnGluThrArgProArgGlnGlnGlyPheAr 1234272 : TTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAGGATTCAG : 1234218 180 : oAlaGluTyr<->PheValAspGluGluLysTyrPheTyrIleLeuPheSerHisG : 197 !!.!.!.||| !:! !!||||||! ! ! ||||||!:!! !:!!!:!! !!!. gValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyrPheGlnL 1234217 : AGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAAT : 1234161 198 : lyMetIleLeuTyrMetLeuValCysValLeuTyrValThrIleAspSerMetTyr : 215 ! ! :!::!!||| !:!!:!! :!!|||:!!||||||:!!||| euAlaTrpGlyAlaValValValValMetIleIleIleThrValAspSerLeuTyr 1234160 : TGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTCGTTGTAC : 1234107 216 : SerCysIleValHisHisThrValGlyLeuValGlyIle : 228 ! ! |||:!!||||||.!! !|||:!! !!!.!:!: MetIleIleIleHisHisAlaSerGlyMetPheAlaVal 1234106 : ATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTG : 1234066 vulgar: NvOr162 160 228 . KQ414851.1 1234272 1234065 - 104 M 22 66 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234066 1234272 104 - . gene_id 6 ; sequence NvOr162 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234066 1234272 . - . KQ414851.1 exonerate:protein2genome:local exon 1234066 1234272 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234066 1234272 104 - . alignment_id 6 ; Query NvOr162 ; Align 1234273 161 66 ; Align 1234204 183 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr151 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 157 Query range: 294 -> 381 Target range: 1222687 -> 1222355 295 : AsnMetIleArgValAlaMetPheValLeuGlyAlaSerLeuHisPheLeuTyrIl : 313 .!.:!:||||||:!!||||||||||||:!!!.. ......|||...||| !:! GluLeuIleArgLeuAlaMetPheValValAlaGlnLysPheHisLeuLeuIleLe 1222687 : GAACTCATCAGGCTTGCGATGTTTGTCGTAGctcagaaatttcatttgctcATCCT : 1222633 314 : eAsnTrpThrGlyGlnGlnMetIleAspHisSerLysGluLeuTyrLeuAsn{Va} : 331 !!:!! !!||||||..!:!!:!!||||||||| !! !||| ! !! {:!} uSerLeuProGlyGlnMetLeuLeuAspHisSerLeuGlyLeuAlaAspIle{Il} 1222632 : TAGTTTACCTGGGCAAATGTTGTTAGATCATAGTTTAGGATTGGCCGATATA{AT} : 1222579 332 : >>>> Target Intron 1 >>>> {l}TyrSerAsnGluTrpTyrAsnLeu : 339 71 bp {!}|||:!!::!:!!||||||.!.||| ++ ++{e}TyrAlaSerLysTrpTyrGluLeu 1222578 : gt.........................ag{T}TACGCTTCTAAATGGTACGAACTA : 1222484 340 : ThrLysGluAlaLysThrLeuLeuLysIleValMetLeuArgCysLeuLysProSe : 358 !! !:!!!.!:!!! !|||:!! ! ! :!!...:!!|||! !:!!::!|||!! ProValLysGlyGlnLysLeuIleTyrThrMetGlnMetArgSerIleArgProCy 1222483 : CCGGTAAAAGGGCAAAAGTTGATTTACACGATGCAAATGAGGTCCATACGGCCATG : 1222427 359 : rLysPheThrAlaGlyGlyLeuTyrThrLeuAsnLeuGluSerPheGlyThrIleM : 377 !! !!!.||||||||||||:!!:!! !:!!|||:!!||||||||||||! !:!! sIleLeuThrAlaGlyGlyValHisGluMetAsnIleGluSerPheGlyIleValC 1222426 : TATATTAACAGCAGGAGGAGTGCATGAGATGAACATCGAGAGTTTCGGAATAGTAT : 1222370 378 : etGluSerAlaLeu : 381 .!.!:! !:!! ysAsnAsnMetIle 1222369 : GTAATAATATGATA : 1222356 vulgar: NvOr151 294 381 . KQ414851.1 1222687 1222355 - 157 M 36 108 S 0 2 5 0 2 I 0 67 3 0 2 S 1 1 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222356 1222687 157 - . gene_id 1 ; sequence NvOr151 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1222578 1222687 . - . KQ414851.1 exonerate:protein2genome:local exon 1222578 1222687 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1222576 1222577 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222507 1222577 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1222507 1222508 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222356 1222506 . - . KQ414851.1 exonerate:protein2genome:local exon 1222356 1222506 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222356 1222687 157 - . alignment_id 1 ; Query NvOr151 ; Align 1222688 295 108 ; Align 1222506 332 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr151 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 141 -> 220 Target range: 1234305 -> 1234065 142 : IleGlyPheCysGlnIleProMetIleSerValIleLeuAspIleIleIleProLe : 160 :!!! !||| ! !:!!|||:!::!!! ! !.!!||||||:!!:!!:!!||||| ValValPheLeuLeuValProLeuValPheProPheLeuAspValValLeuProLe 1234305 : GTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGTCGTCCTTCCGTT : 1234251 161 : uAsnValSerArgThrLysIleLeu<->PheLysGlyGlyGluPheIleLeuAspP : 178 ||||! !!!!||| !!::! ! ! |||!:!! !..! ! .!. !!!!||| uAsnGluThrArgProArgGlnGlnGlyPheArgValAsnTyrLeuTyrPheAspG 1234250 : AAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTATATTTCGACG : 1234194 179 : roTyrGlnHisPheTyrLysLeuTyrValTyrPheValIleThrSerPheValIle : 196 ! .!.:!!|||!:!!..:!!||| !! ! !!.!.! !:!! !!|||:!! luAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaValValVal 1234193 : AAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAGTCGTTGTT : 1234140 197 : MetThrIleIleIleAlaIleAspThrAsnTyrThrIleIleIleHisGlnIleLe : 215 :!:! !|||||||||.!!:!!|||:!! |||! !||||||||||||!!. ! ValMetIleIleIleThrValAspSerLeuTyrMetIleIleIleHisHisAlaSe 1234139 : GTCATGATCATAATCACCGTAGACTCGTTGTACATGATAATAATTCACCATGCCAG : 1234083 216 : uGlyLeuLeuThrIle : 220 !|||:!!!!!.!!:!: rGlyMetPheAlaVal 1234082 : CGGAATGTTCGCCGTG : 1234066 vulgar: NvOr151 141 220 . KQ414851.1 1234305 1234065 - 108 M 27 81 G 0 3 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234066 1234305 108 - . gene_id 2 ; sequence NvOr151 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234066 1234305 . - . KQ414851.1 exonerate:protein2genome:local exon 1234066 1234305 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234066 1234305 108 - . alignment_id 2 ; Query NvOr151 ; Align 1234306 142 81 ; Align 1234222 169 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr151 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 143 -> 220 Target range: 1224264 -> 1224030 144 : PheCysGlnIleProMetIleSerValIleLeuAspIleIleIleProLeuAsnVa : 162 !:! ....!!|||:!!|||!:! !:!!||||||:!!:!! |||||||||! TyrMetSerPheProLeuIleAsnProValLeuAspValValAlaProLeuAsnGl 1224264 : TATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGA : 1224210 163 : lSerArgThrLysIleLeuPheLysGlyGlyGluPheIle<->LeuAspProTyrG : 180 !!!!||| !!:::! |||!!. !! !...!:!||| :!!||| !|||: uThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleAspGluTyrG 1224209 : GACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACG : 1224153 181 : lnHisPheTyrLysLeuTyrValTyrPheValIleThrSerPheValIleMetThr : 198 !!|||||||||!..:!! !! !!:!!.!. !! !!:! !.!! ! ! !! ! luHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSerCysGlyMet 1224152 : AGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATG : 1224099 199 : IleIleIleAlaIleAspThrAsnTyrThrIleIleIleHisGlnIleLeuGlyLe : 217 !!:|||||||||:!:|||! ! |||! !! !|||||| !!!.:!!! !||||| MetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCysGlyLe 1224098 : ATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTGCGGATT : 1224042 218 : uLeuThrIle : 220 |!!!.!!:!: uPheAlaVal 1224041 : GTTCGCAGTG : 1224031 vulgar: NvOr151 143 220 . KQ414851.1 1224264 1224030 - 108 M 32 96 G 0 3 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224264 108 - . gene_id 3 ; sequence NvOr151 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224264 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224264 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224264 108 - . alignment_id 3 ; Query NvOr151 ; Align 1224265 144 96 ; Align 1224166 176 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr151 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 331 -> 376 Target range: 1228545 -> 1228410 332 : TyrSerAsnGluTrpTyrAsnLeuThrLysGluAlaLysThrLeuLeuLysIleVa : 350 ||||||::! !||||||!!.:!!:!! !:!! !:!! !:!!:!! ! !!::! TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 351 : lMetLeuArgCysLeuLysProSerLysPheThrAlaGlyGlyLeuTyrThrLeuA : 369 !...:!!|||..!|||||||||!!!! !!.|||||||||||||||||| !:!!| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 370 : snLeuGluSerPheGlyThrIle : 376 ||:!!|||!:!|||!.!!.!:!! snMetGluAsnPheAlaAsnVal 1228433 : ACATGGAGAACTTTGCAAACGTT : 1228411 vulgar: NvOr151 331 376 . KQ414851.1 1228545 1228410 - 107 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1228545 107 - . gene_id 4 ; sequence NvOr151 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228411 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1228545 107 - . alignment_id 4 ; Query NvOr151 ; Align 1228546 332 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr151 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 331 -> 376 Target range: 1233381 -> 1233246 332 : TyrSerAsnGluTrpTyrAsnLeuThrLysGluAlaLysThrLeuLeuLysIleVa : 350 ||||||::! !||||||!!.:!! !! !:!! !:!! !:!!:!! ! ! :! TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMe 1233381 : TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGAT : 1233327 351 : lMetLeuArgCysLeuLysProSerLysPheThrAlaGlyGlyLeuTyrThrLeuA : 369 !...:!!|||..!|||||||||!!! !!.|||||||||||||||||| !:!!| tGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetA 1233326 : GCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGA : 1233270 370 : snLeuGluSerPheGlyThrIle : 376 ||:!!|||!:!|||!.!!.!:!! snMetGluAsnPheAlaAsnVal 1233269 : ACATGGAGAACTTTGCAAACGTT : 1233247 vulgar: NvOr151 331 376 . KQ414851.1 1233381 1233246 - 104 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233247 1233381 104 - . gene_id 5 ; sequence NvOr151 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1233247 1233381 . - . KQ414851.1 exonerate:protein2genome:local exon 1233247 1233381 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233247 1233381 104 - . alignment_id 5 ; Query NvOr151 ; Align 1233382 332 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr151 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 143 -> 220 Target range: 1229464 -> 1229230 144 : PheCysGlnIleProMetIleSerValIleLeuAspIleIleIleProLeuAsnVa : 162 |||! ! !:!!|||:!!.!!.!! ! !|||||||||:!!:!!|||! !|||! PheLeuLeuValProLeuPheGlyProAlaLeuAspIleValLeuProSerAsnGl 1229464 : TTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCGTCCTTCCATCAAATGA : 1229410 163 : lSerArgThrLys<->IleLeuPheLysGlyGlyGluPheIleLeuAspProTyrG : 180 !!!!||| !!::! !||||||!:!! !..! ! .!.|||!!!|||! ! . uThrArgProArgGlnGlnLeuPheArgValAsnTyrIleIlePheAspGlnAlaA 1229409 : AACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAATTTTCGACCAAGCAG : 1229353 181 : lnHisPheTyrLysLeuTyrValTyrPheValIleThrSerPheValIleMetThr : 198 !.:!!|||!:! ! :!!|||:!! ! !!. !! !!!!.!!|||:!!:!:! ! spTyrPhePheTyrValTyrIleGlnLeuPheTrpCysThrIleValLeuValMet 1229352 : ACTATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACAATCGTTCTTGTAATG : 1229299 199 : IleIleIleAlaIleAspThrAsnTyrThrIleIleIleHisGlnIleLeuGlyLe : 217 !||||||.!!:!!|||:!! |||! !|||||||||:!!!!. ! !|||:! AlaIleIleThrValAspSerLeuTyrMetIleIleIleTyrHisAlaSerGlyMe 1229298 : GCCATTATCACCGTAGATTCATTGTACATGATCATAATTTACCATGCCAGCGGAAT : 1229242 218 : uLeuThrIle : 220 !!!!.!!||| tPheAlaIle 1229241 : GTTCGCTATA : 1229231 vulgar: NvOr151 143 220 . KQ414851.1 1229464 1229230 - 104 M 23 69 G 0 3 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229231 1229464 104 - . gene_id 6 ; sequence NvOr151 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229231 1229464 . - . KQ414851.1 exonerate:protein2genome:local exon 1229231 1229464 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229231 1229464 104 - . alignment_id 6 ; Query NvOr151 ; Align 1229465 144 69 ; Align 1229393 167 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr150CTE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 166 Query range: 294 -> 375 Target range: 1222687 -> 1222373 295 : GlnPheIleArgLeuAlaMetIleGluValGlyValMetIleHisLeuLeuTyrLe : 313 :!!.!!|||||||||||||||.!!! |||!.. ...||||||||| !|| GluLeuIleArgLeuAlaMetPheValValAlaGlnLysPheHisLeuLeuIleLe 1222687 : GAACTCATCAGGCTTGCGATGTTTGTCGTAGctcagaaatttcatttgctcATCCT : 1222633 314 : uSerTyrProGlyGlnLysValLeuAspTyrSerSerSerIleCysGlnGlu{Se} : 331 ||||! |||||||||! !:!!||||||:!!|||! !.!!:!:..!.!. !{! } uSerLeuProGlyGlnMetLeuLeuAspHisSerLeuGlyLeuAlaAspIle{Il} 1222632 : TAGTTTACCTGGGCAAATGTTGTTAGATCATAGTTTAGGATTGGCCGATATA{AT} : 1222579 332 : >>>> Target Intron 1 >>>> {r}TyrThrAsnGluTrpTyrLeuIle : 339 71 bp {!}|||.!!::!:!!|||||| !:!! ++ ++{e}TyrAlaSerLysTrpTyrGluLeu 1222578 : gt.........................ag{T}TACGCTTCTAAATGGTACGAACTA : 1222484 340 : SerLysLysSerLysIleLeuLeuLysPheMetMetLeuArgCysIleLysProSe : 358 !! !|||.!!:!!! |||:!! ! |||...:!!|||! !|||::!|||!! ProValLysGlyGlnLysLeuIleTyrThrMetGlnMetArgSerIleArgProCy 1222483 : CCGGTAAAAGGGCAAAAGTTGATTTACACGATGCAAATGAGGTCCATACGGCCATG : 1222427 359 : rValLeuThrAlaGlyGlyLeuTyrIleMetAsnTyrGluAsnTyrGlyIle : 375 !:!!|||||||||||||||:!!:!! |||||| !|||!:!!:!|||||| sIleLeuThrAlaGlyGlyValHisGluMetAsnIleGluSerPheGlyIle 1222426 : TATATTAACAGCAGGAGGAGTGCATGAGATGAACATCGAGAGTTTCGGAATA : 1222374 vulgar: NvOr150CTE 294 375 . KQ414851.1 1222687 1222373 - 166 M 36 108 S 0 2 5 0 2 I 0 67 3 0 2 S 1 1 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222374 1222687 166 - . gene_id 1 ; sequence NvOr150CTE ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1222578 1222687 . - . KQ414851.1 exonerate:protein2genome:local exon 1222578 1222687 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1222576 1222577 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222507 1222577 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1222507 1222508 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222374 1222506 . - . KQ414851.1 exonerate:protein2genome:local exon 1222374 1222506 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222374 1222687 166 - . alignment_id 1 ; Query NvOr150CTE ; Align 1222688 295 108 ; Align 1222506 332 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr150CTE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 137 -> 221 Target range: 1243857 -> 1243605 138 : LeuTyrAlaAlaGlyPheAlaPheSerGlnValSerMetValProValIleLeuAs : 156 |||!:! ! !..!.!. !||| ! ! !! !!:!::!!||| !|||||||| LeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleLeuAs 1243857 : TTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGA : 1243803 157 : pTyrIleTrpProLeuAsnGluSerArgProLysIleLeuIleValHisAlaGluT : 175 | !:!!! ||||||||||||!!!||| !!::!||| :::::: :::| pValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuGlnT 1243802 : TGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgcaat : 1243746 176 : yrIleIleAspProLeuGlnTyrTyrPheGluLeuTyrGlyAlaTyrCysIleLeu : 193 ||:!:.!!||| ::: ::::::...||||||! ! ! ! !! ! ! yrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCys 1243745 : accTGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGCTGGTGC : 1243692 194 : ThrPheValAsnLeuThrValLeuIleSerIleAspThrAlaPheSerSerIleVa : 212 :!!|||:!!!.!:!!! !|||:!!|||!!!||||||.!! !!:! ! !|||:! SerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValValIleIl 1243691 : TCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCAT : 1243635 213 : lTyrGlnAsnLeuGlyValPheSerIle : 221 !:!!!!.!..! !|||:!!|||:!!:!! eHisHisThrCysGlyLeuPheAlaVal 1243634 : TCATCACACGTGTGGCTTATTCGCTGTT : 1243606 vulgar: NvOr150CTE 137 221 . KQ414851.1 1243857 1243605 - 126 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243857 126 - . gene_id 2 ; sequence NvOr150CTE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243857 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243857 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243857 126 - . alignment_id 2 ; Query NvOr150CTE ; Align 1243858 138 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr150CTE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 331 -> 373 Target range: 1228545 -> 1228419 332 : TyrThrAsnGluTrpTyrLeuIleSerLysLysSerLysIleLeuLeuLysPheMe : 350 |||:!!::! !|||||| !:!!||| !|||! !:!! !:!!:!! ! .!.|| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 351 : tMetLeuArgCysIleLysProSerValLeuThrAlaGlyGlyLeuTyrIleMetA : 369 |...:!!|||..!:!!||||||!!!:!!||||||||||||||||||||| !|||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 370 : snTyrGluAsnTyr : 373 || ||||||!:! snMetGluAsnPhe 1228433 : ACATGGAGAACTTT : 1228420 vulgar: NvOr150CTE 331 373 . KQ414851.1 1228545 1228419 - 117 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228420 1228545 117 - . gene_id 3 ; sequence NvOr150CTE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228420 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228420 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228420 1228545 117 - . alignment_id 3 ; Query NvOr150CTE ; Align 1228546 332 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr150CTE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 331 -> 373 Target range: 1233381 -> 1233255 332 : TyrThrAsnGluTrpTyrLeuIleSerLysLysSerLysIleLeuLeuLysPheMe : 350 |||:!!::! !|||||| !:!! !! !|||! !:!! !:!!:!! ! || TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMe 1233381 : TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGAT : 1233327 351 : tMetLeuArgCysIleLysProSerValLeuThrAlaGlyGlyLeuTyrIleMetA : 369 |...:!!|||..!:!!||||||!!!|||||||||||||||||||||||| !|||| tGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetA 1233326 : GCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGA : 1233270 370 : snTyrGluAsnTyr : 373 || ||||||!:! snMetGluAsnPhe 1233269 : ACATGGAGAACTTT : 1233256 vulgar: NvOr150CTE 331 373 . KQ414851.1 1233381 1233255 - 111 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233256 1233381 111 - . gene_id 4 ; sequence NvOr150CTE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1233256 1233381 . - . KQ414851.1 exonerate:protein2genome:local exon 1233256 1233381 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233256 1233381 111 - . alignment_id 4 ; Query NvOr150CTE ; Align 1233382 332 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr149 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 156 Query range: 94 -> 220 Target range: 1245057 -> 1243605 95 : LysPheIleThrLeuTyrGluLysIleAlaLeuAsnTrpLysGluIleThrAspPr : 113 :!!||| !! !||||||!!:! !!: ! !.!.||| !!:!!: !..!! GlnPheAspLysLeuTyrAspIleMetLysLysGluTrp---AspMetLeuSerLe 1245057 : CAGTTCGACAAGTTGTACGATATCATGAAGAAAGAATGG---GATATGTTAAGTCT : 1245006 114 : oTyrGluGlnSerIleLeuGluGluPheSerLysLeuGlyArgLeuLysSerTrpL : 132 ! !!||||||..!||||||||||||.!!!!!|||! !|||!!! ! !!!! : uAspGluGlnGlnIleLeuGluGluIleThrLysArgGlySerLysLeuThrAsnI 1245005 : CGACGAGCAGCAGATTCTCGAAGAAATCACTAAACGAGGAAGTAAATTAACCAATA : 1244949 133 : euTyrPhe{V} >>>> Target Intron 1 >>>> {al}TyrCysAlaVal : 139 !!||| { } 1077 bp { !} !! ! ! leTyrArg{S}++ ++{er}ThrLeuPheTyr 1244948 : TATACAGA{A}gt.........................ag{GT}ACTTTGTTCTAT : 1243851 140 : AlaGlyPheAlaPheCysGlnMetThrAlaLeuProAlaLeuMetAspIleIleLe : 158 !..!.!. !||| !.!. !! !:!!||| !!:!!:!!|||:!!:!!! PheSerIleIlePheValLeuPheProLeuIleProProIleLeuAspValValSe 1243850 : TTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTC : 1243794 159 : uProLeuAsnGluSerArgProLysIleLeuValThrLysAlaGluTyrProPheA : 177 !||||||||||||!!!||| !!::!||| ||| ||| :::||| !|||| rProLeuAsnGluThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheA 1243793 : ACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCG : 1243737 178 : spProPheGluTyrTyrTyrGluLeuTyrPheLeuTyrCysThrAlaAlaValVal : 195 || ::: :::|||...|||||| !!! ! ! !! !..!:!! !!:!! spMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMet 1243736 : ACAtggagaagaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATG : 1243683 196 : SerValSerValLeuAlaSerThrAspSerThrTyrSerValIleIleHisGlnSe : 214 !!!:!!! !|||:!! !!!!! !|||:!! !||| !||||||||||||!!.!! ThrMetMetValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisTh 1243682 : ACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACAC : 1243626 215 : rLeuGlyIlePheGlyIle : 220 !! !|||:!!|||!.!:!! rCysGlyLeuPheAlaVal 1243625 : GTGTGGCTTATTCGCTGTT : 1243606 vulgar: NvOr149 94 220 . KQ414851.1 1245057 1243605 - 156 M 13 39 G 1 0 M 26 78 S 0 1 5 0 2 I 0 1073 3 0 2 S 1 2 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1245057 156 - . gene_id 1 ; sequence NvOr149 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1244940 1245057 . - . KQ414851.1 exonerate:protein2genome:local exon 1244940 1245057 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local splice5 1244938 1244939 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243863 1244939 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1243863 1243864 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1243606 1243862 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243862 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1245057 156 - . alignment_id 1 ; Query NvOr149 ; Align 1245058 95 39 ; Align 1245019 109 78 ; Align 1243861 136 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr149 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 134 Query range: 152 -> 231 Target range: 1234272 -> 1234032 153 : LeuMetAspIleIleLeuProLeuAsnGluSerArgProLysIleLeuValThrLy : 171 !!!:!!|||:!!:!!|||||||||||||||!!!||||||::! ! !! ! !!: PheLeuAspValValLeuProLeuAsnGluThrArgProArgGlnGlnGlyPheAr 1234272 : TTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAGGATTCAG : 1234218 172 : sAlaGluTyr<->ProPheAspProPheGluTyrTyrTyrGluLeuTyrPheLeuT : 189 !!.!.!.||| !|||||| ! !!:|||!:!!:!...:!!||||||! !! gValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyrPheGlnL 1234217 : AGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAAT : 1234161 190 : yrCysThrAlaAlaValValSerValSerValLeuAlaSerThrAspSerThrTyr : 207 ..! !!.!||||||||| !|||! !:!!:!! !!!!..!|||||| !||| euAlaTrpGlyAlaValValValValMetIleIleIleThrValAspSerLeuTyr 1234160 : TGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTCGTTGTAC : 1234107 208 : SerValIleIleHisGlnSerLeuGlyIlePheGlyIleValAsnHisArgLeuGl : 226 ! !:!!|||||||||!!.:!! !|||!!:|||!.!:!: !... ! ! !! !!: MetIleIleIleHisHisAlaSerGlyMetPheAlaValCysGly***Met***Ar 1234106 : ATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTGTGCGGGTAAATGTAACG : 1234050 227 : nLysAlaAlaLysHis : 231 ! ! !!.!|||||| gTyrGlnGlyLysHis 1234049 : ATATCAAGGAAAACAT : 1234033 vulgar: NvOr149 152 231 . KQ414851.1 1234272 1234032 - 134 M 22 66 G 0 3 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234033 1234272 134 - . gene_id 2 ; sequence NvOr149 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234033 1234272 . - . KQ414851.1 exonerate:protein2genome:local exon 1234033 1234272 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234033 1234272 134 - . alignment_id 2 ; Query NvOr149 ; Align 1234273 153 66 ; Align 1234204 175 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr149 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 153 -> 220 Target range: 1229434 -> 1229230 154 : MetAspIleIleLeuProLeuAsnGluSerArgProLysIleLeuValThrLysAl : 172 :!!||||||:!!||||||! !||||||!!!||||||::! !! !:!! !!:!!. LeuAspIleValLeuProSerAsnGluThrArgProArgGlnGlnLeuPheArgVa 1229434 : CTGGACATCGTCCTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGT : 1229380 173 : aGluTyr<->ProPheAspProPheGluTyrTyrTyrGluLeuTyrPheLeuTyrC : 190 !.!.||| !||||||! ! !!:|||!:!!:! ! :!!|||.!!! !! ! lAsnTyrIleIlePheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuP 1229379 : TAACTATATAATTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGT : 1229323 191 : ysThrAlaAlaValValSerValSerValLeuAlaSerThrAspSerThrTyrSer : 208 ! !..!.!!:!!||| !|||! !!.!:!! !!!!..!|||||| !|||! ! heTrpCysThrIleValLeuValMetAlaIleIleThrValAspSerLeuTyrMet 1229322 : TTTGGTGTACAATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACATG : 1229269 209 : ValIleIleHisGlnSerLeuGlyIlePheGlyIle : 220 :!!||||||:!!!!.:!! !|||!!:|||!.!||| IleIleIleTyrHisAlaSerGlyMetPheAlaIle 1229268 : ATCATAATTTACCATGCCAGCGGAATGTTCGCTATA : 1229231 vulgar: NvOr149 153 220 . KQ414851.1 1229434 1229230 - 109 M 21 63 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229231 1229434 109 - . gene_id 3 ; sequence NvOr149 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229231 1229434 . - . KQ414851.1 exonerate:protein2genome:local exon 1229231 1229434 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229231 1229434 109 - . alignment_id 3 ; Query NvOr149 ; Align 1229435 154 63 ; Align 1229369 175 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr149 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 152 -> 220 Target range: 1224237 -> 1224030 153 : LeuMetAspIleIleLeuProLeuAsnGluSerArgProLysIleLeuValThrLy : 171 :!!:!!|||:!!:!! !||||||||||||!!!||||||:::! |||:!! ! ValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLeuLeuLeuPr 1224237 : GTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCC : 1224183 172 : sAlaGluTyrProPhe<->AspProPheGluTyrTyrTyrGluLeuTyrPheLeuT : 189 !!.!...||| !||| ||| !!:!|||:!!!:!|||...:!! !!|||! ! oValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValAsnPheHisL 1224182 : AGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAATTTTCACC : 1224126 190 : yrCysThrAlaAlaValValSerValSerValLeuAlaSerThrAspSerThrTyr : 207 ! !|||::!!.!:!! !!!!! !! !:!!:!! !:!!..!|||! ! !||| euTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAspMetLeuTyr 1224125 : TATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATATGTTATAC : 1224072 208 : SerValIleIleHisGlnSerLeuGlyIlePheGlyIle : 220 ! !..!|||||| !!!. !! !|||:!:|||!.!:!: IleThrIleIlePheHisLeuCysGlyLeuPheAlaVal 1224071 : ATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: NvOr149 152 220 . KQ414851.1 1224237 1224030 - 102 M 24 72 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224237 102 - . gene_id 4 ; sequence NvOr149 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224237 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224237 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224237 102 - . alignment_id 4 ; Query NvOr149 ; Align 1224238 153 72 ; Align 1224163 177 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr147 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 159 Query range: 147 -> 224 Target range: 1243836 -> 1243605 148 : PheCysGlnIleProMetIleProValPheLeuAspPheIleAsnProLeuAsnGl : 166 ||| !.!!|||:!:|||||| !.!.|||||| !!:!!:::||||||||||| PheValLeuPheProLeuIleProProIleLeuAspValValSerProLeuAsnGl 1243836 : TTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGA : 1243782 167 : uThrArgProLysIleLeuPheValLysAlaGluPheIlePheAspProTyrLysT : 185 ||||||| !!::!||| :::||| :::::::!:|||||| ||| uThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspMetGluLysA 1243781 : GACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACAtggagaaga : 1243725 186 : yrPheTyrGlnLeuTyrAlaPhePheIleGlyCysAlaAlaSerAlaValPheIle : 203 ||||||...||||||!.!!:! ! ! !!|||:!! !! !.!!:!!.!.:!! snPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMetVal 1243724 : atttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTT : 1243671 204 : ValCysSerIleAspThrThrPheThrAlaValValHisGlnIleIleGlyValVa : 222 :!! !!!!||||||.!! !!:!..!!.!:!!:!!|||!!.! !|||:!! ! IleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGlyLeuPh 1243670 : ATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTTATT : 1243614 223 : lSerIle : 224 !:!!:!! eAlaVal 1243613 : CGCTGTT : 1243606 vulgar: NvOr147 147 224 . KQ414851.1 1243836 1243605 - 159 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243836 159 - . gene_id 1 ; sequence NvOr147 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243836 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243836 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243836 159 - . alignment_id 1 ; Query NvOr147 ; Align 1243837 148 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr147 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 335 -> 380 Target range: 1228545 -> 1228410 336 : TyrAlaThrGluTrpTyrAsnValSerGluArgSerLysLysLeuLeuSerIleIl : 354 |||:!!:!! !||||||!!.||||||! !!:!! !:!!::!:!!:!!! !!!:!! TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 355 : eMetLeuArgSerLeuLysProCysValPheThrAlaGlyGlyLeuTyrValMetA : 373 :...:!!|||:!!||||||||||||:!!!!.||||||||||||||||||! !|||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 374 : snLeuGluAsnPheGlySerIle : 380 ||:!!|||||||||!.!!:!:!! snMetGluAsnPheAlaAsnVal 1228433 : ACATGGAGAACTTTGCAAACGTT : 1228411 vulgar: NvOr147 335 380 . KQ414851.1 1228545 1228410 - 139 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1228545 139 - . gene_id 2 ; sequence NvOr147 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228411 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1228545 139 - . alignment_id 2 ; Query NvOr147 ; Align 1228546 336 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr147 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 133 Query range: 335 -> 380 Target range: 1233381 -> 1233246 336 : TyrAlaThrGluTrpTyrAsnValSerGluArgSerLysLysLeuLeuSerIleIl : 354 |||:!!:!! !||||||!!.||| !!! !!:!! !:!!::!:!!:!!! !! !! TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMe 1233381 : TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGAT : 1233327 355 : eMetLeuArgSerLeuLysProCysValPheThrAlaGlyGlyLeuTyrValMetA : 373 :...:!!|||:!!|||||||||||||||!!.||||||||||||||||||! !|||| tGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetA 1233326 : GCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGA : 1233270 374 : snLeuGluAsnPheGlySerIle : 380 ||:!!|||||||||!.!!:!:!! snMetGluAsnPheAlaAsnVal 1233269 : ACATGGAGAACTTTGCAAACGTT : 1233247 vulgar: NvOr147 335 380 . KQ414851.1 1233381 1233246 - 133 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233247 1233381 133 - . gene_id 3 ; sequence NvOr147 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1233247 1233381 . - . KQ414851.1 exonerate:protein2genome:local exon 1233247 1233381 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233247 1233381 133 - . alignment_id 3 ; Query NvOr147 ; Align 1233382 336 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr147 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 331 -> 380 Target range: 1242808 -> 1242661 332 : PheAlaAlaIleTyrAlaThrGluTrpTyrAsnValSerGluArgSerLysLysLe : 350 |||... !! !||| !:!! !||||||.!...! !!! ! !!! !:!!|||:! PheThrAsnArgTyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIl 1242808 : tttaccAATAGATATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAAT : 1242754 351 : uLeuSerIleIleMetLeuArgSerLeuLysProCysValPheThrAlaGlyGlyL : 369 !||| !|||:!!...:!!|||||| !||||||||| !!!...!|||||||||| eLeuHisIleValGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyL 1242753 : ACTTCATATAGTACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGAT : 1242697 370 : euTyrValMetAsnLeuGluAsnPheGlySerIle : 380 |||||! !||||||:!!|||||||||||||||:!! euTyrGluMetAsnIleGluAsnPheGlySerVal 1242696 : TATACGAAATGAACATTGAGAATTTTGGATCAGTA : 1242662 vulgar: NvOr147 331 380 . KQ414851.1 1242808 1242661 - 127 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242662 1242808 127 - . gene_id 4 ; sequence NvOr147 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1242662 1242808 . - . KQ414851.1 exonerate:protein2genome:local exon 1242662 1242808 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242662 1242808 127 - . alignment_id 4 ; Query NvOr147 ; Align 1242809 332 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr147 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 145 -> 224 Target range: 1234305 -> 1234065 146 : ValGlyPheCysGlnIleProMetIleProValPheLeuAspPheIleAsnProLe : 164 |||! !||| ! !:!!|||:!::!! ! !||||||||| !!:!! !||||| ValValPheLeuLeuValProLeuValPheProPheLeuAspValValLeuProLe 1234305 : GTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGTCGTCCTTCCGTT : 1234251 165 : uAsnGluThrArgProLysIleLeuPheValLysAlaGluPheIle<->PheAspP : 182 ||||||||||||||||::! ! ! !!!:!!.!.!.!:!:!! |||||| uAsnGluThrArgProArgGlnGlnGlyPheArgValAsnTyrLeuTyrPheAspG 1234250 : AAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTATATTTCGACG : 1234194 183 : roTyrLysTyrPheTyrGlnLeuTyrAlaPhePheIleGlyCysAlaAlaSerAla : 200 ! ! ||||||!:!...:!!||| ! !!. ! !! !!|||!.! !!.! luAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaValValVal 1234193 : AAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAGTCGTTGTT : 1234140 201 : ValPheIleValCysSerIleAspThrThrPheThrAlaValValHisGlnIleIl : 219 |||.!.|||:!! !!!!:!!|||:!! !!:!! ! !:!!:!!|||!!. !! ValMetIleIleIleThrValAspSerLeuTyrMetIleIleIleHisHisAlaSe 1234139 : GTCATGATCATAATCACCGTAGACTCGTTGTACATGATAATAATTCACCATGCCAG : 1234083 220 : eGlyValValSerIle : 224 !|||:!! !!:!!:!: rGlyMetPheAlaVal 1234082 : CGGAATGTTCGCCGTG : 1234066 vulgar: NvOr147 145 224 . KQ414851.1 1234305 1234065 - 114 M 34 102 G 0 3 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234066 1234305 114 - . gene_id 5 ; sequence NvOr147 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234066 1234305 . - . KQ414851.1 exonerate:protein2genome:local exon 1234066 1234305 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234066 1234305 114 - . alignment_id 5 ; Query NvOr147 ; Align 1234306 146 102 ; Align 1234201 180 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr147 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 147 -> 224 Target range: 1224264 -> 1224030 148 : PheCysGlnIleProMetIleProValPheLeuAspPheIleAsnProLeuAsnGl : 166 !:! ....!!|||:!!||| ! ! !!|||||| !!:!! ||||||||||| TyrMetSerPheProLeuIleAsnProValLeuAspValValAlaProLeuAsnGl 1224264 : TATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGA : 1224210 167 : uThrArgProLysIleLeuPheValLysAlaGluPheIlePhe<->AspProTyrL : 184 ||||||||||:::! |||!!.:!! !!.!...!:!|||||| ||| !|||: uThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleAspGluTyrG 1224209 : GACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACG : 1224153 185 : ysTyrPheTyrGlnLeuTyrAlaPhePheIleGlyCysAlaAlaSerAlaValPhe : 202 !!:!!||||||...:!! !! ! !.!. ! ! !!!.! !|||..!! !.!. luHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSerCysGlyMet 1224152 : AGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATG : 1224099 203 : IleValCysSerIleAspThrThrPheThrAlaValValHisGlnIleIleGlyVa : 221 !!::!! !:!!:!:|||! ! !!:!! !.!!:!!:!! !!!.:!! !|||:! MetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCysGlyLe 1224098 : ATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTGCGGATT : 1224042 222 : lValSerIle : 224 ! !!:!!:!: uPheAlaVal 1224041 : GTTCGCAGTG : 1224031 vulgar: NvOr147 147 224 . KQ414851.1 1224264 1224030 - 106 M 33 99 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224264 106 - . gene_id 6 ; sequence NvOr147 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224264 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224264 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224264 106 - . alignment_id 6 ; Query NvOr147 ; Align 1224265 148 99 ; Align 1224163 181 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr147 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 147 -> 224 Target range: 1229464 -> 1229230 148 : PheCysGlnIleProMetIleProValPheLeuAspPheIleAsnProLeuAsnGl : 166 |||! ! !:!!|||:!!.!! ! ! !||||||.!!:!! !|||! !||||| PheLeuLeuValProLeuPheGlyProAlaLeuAspIleValLeuProSerAsnGl 1229464 : TTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCGTCCTTCCATCAAATGA : 1229410 167 : uThrArgProLysIleLeuPheValLysAlaGluPhe<->IlePheAspProTyrL : 184 ||||||||||::! !! !.!. !!!:!!.!.!.!:! |||||||||! ! uThrArgProArgGlnGlnLeuPheArgValAsnTyrIleIlePheAspGlnAlaA 1229409 : AACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAATTTTCGACCAAGCAG : 1229353 185 : ysTyrPheTyrGlnLeuTyrAlaPhePheIleGlyCysAlaAlaSerAlaValPhe : 202 ! ||||||!:! ! :!!||| ! !!..!! !!|||.!! ! ! !|||.!. spTyrPhePheTyrValTyrIleGlnLeuPheTrpCysThrIleValLeuValMet 1229352 : ACTATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACAATCGTTCTTGTAATG : 1229299 203 : IleValCysSerIleAspThrThrPheThrAlaValValHisGlnIleIleGlyVa : 221 !:!! !!!!:!!|||:!! !!:!! ! !:!!:!!:!!!!. !! !|||:! AlaIleIleThrValAspSerLeuTyrMetIleIleIleTyrHisAlaSerGlyMe 1229298 : GCCATTATCACCGTAGATTCATTGTACATGATCATAATTTACCATGCCAGCGGAAT : 1229242 222 : lValSerIle : 224 ! !!:!!||| tPheAlaIle 1229241 : GTTCGCTATA : 1229231 vulgar: NvOr147 147 224 . KQ414851.1 1229464 1229230 - 101 M 31 93 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229231 1229464 101 - . gene_id 7 ; sequence NvOr147 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229231 1229464 . - . KQ414851.1 exonerate:protein2genome:local exon 1229231 1229464 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229231 1229464 101 - . alignment_id 7 ; Query NvOr147 ; Align 1229465 148 93 ; Align 1229369 179 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr156 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 165 Query range: 87 -> 221 Target range: 1245078 -> 1243605 88 : ThrThrIleLysAlaGlnAlaAlaLeuGlnPheLeuTyrGluGlnIleGlnGlyHi : 106 |||!.!! !|||.!!..! ! !!!!.!. ||||||!!: !!::!! !.! ThrAsnAsnLysThrMetLeuGlnPheAspLysLeuTyrAspIleMetLysLysGl 1245078 : ACGAACAACAAAACTATGTTGCAGTTCGACAAGTTGTACGATATCATGAAGAAAGA : 1245024 107 : sTrpAspThrIleThrAsnLysArgGluArgGlnIleLeuGluGlnSerAlaSerG : 125 .||||||! !:!! !:! !|||!:!||||||||||||:!!! !.!!!.!. uTrpAspMetLeu---SerLeuAspGluGlnGlnIleLeuGluGluIleThrLysA 1245023 : ATGGGATATGTTA---AGTCTCGACGAGCAGCAGATTCTCGAAGAAATCACTAAAC : 1244970 126 : luSerGlnPheLeuSerLysPheTyrMet{G} >>>> Target Intron 1 > : 135 .!.!!... |||!!!!!..!.|||! {.} 1077 bp rgGlySerLysLeuThrAsnIleTyrArg{S}++ 1244969 : GAGGAAGTAAATTAACCAATATATACAGA{A}gt...................... : 1244937 136 : >>> {ly}AlaSerTyrValAlaLeuValValTyrThrAlaSerProValLeuVa : 151 {!!}.!!! !!:! ! !! !:!!:!!!:!..! !! !||| |||:! ++{er}ThrLeuPheTyrPheSerIleIlePheValLeuPhePro---LeuIl 1244936 : ...ag{GT}ACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCA---TTAAT : 1243818 152 : lProIleIleLeuAspIleAlaLeuProLeuAsnGluSerArgArgLysThrPheP : 170 !||| !|||||||||:!!!.!! !||||||||||||!!!||| !::!! ! eProProIleLeuAspValValSerProLeuAsnGluThrArgSerArgIleGluV 1243817 : TCCGCCAATATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaag : 1243761 171 : roTyrPheIleGluTyrPheIleAspThrGluPheTyrTyrTyrGlnLeuMetVal : 188 ::::::|||.!..!!|||! ||| :::|||...||| ||| alIleLysLeuGlnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrVal 1243760 : taataaaattgcaataccTGTTCGACAtggagaagaatttttattcattatacGTC : 1243707 189 : HisGlyThrIleCysPheThrIleSerValLeuValTyrIleSerIleAspThrMe : 207 :!! ! ! |||! !!!:!!!:!!:!!||| |||!!!||||||.!!:! TyrThrGlyTrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLe 1243706 : TACACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTT : 1243650 208 : tTyrAlaAlaCysCysGlnHisLeuCysGlyLeuPheAspIle : 221 :|||!.!!.! ! !!!.||| !||||||||||||! !:!! uTyrValValIleIleHisHisThrCysGlyLeuPheAlaVal 1243649 : ATATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCTGTT : 1243606 vulgar: NvOr156 87 221 . KQ414851.1 1245078 1243605 - 165 M 23 69 G 1 0 M 23 69 S 0 1 5 0 2 I 0 1073 3 0 2 S 1 2 M 13 39 G 1 0 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1245078 165 - . gene_id 1 ; sequence NvOr156 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1244940 1245078 . - . KQ414851.1 exonerate:protein2genome:local exon 1244940 1245078 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local splice5 1244938 1244939 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1243863 1244939 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1243863 1243864 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1243606 1243862 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243862 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1245078 165 - . alignment_id 1 ; Query NvOr156 ; Align 1245079 88 69 ; Align 1245010 112 69 ; Align 1243861 136 39 ; Align 1243822 150 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr156 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 336 -> 385 Target range: 1242808 -> 1242661 337 : MetAsnSerAlaTyrPheSerGluTrpTyrAsnLeuProLeuAsnAlaArgLysLe : 355 ......!:! !||| !||| !||||||.!. !|||:!! !!:!|||:! PheThrAsnArgTyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIl 1242808 : tttaccAATAGATATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAAT : 1242754 356 : uIleGlnLeuIleIleHisArgSerLeuAsnProCysGlnPheThrAlaGlyGlyL : 374 !:!!!!.:!!:!! ! |||||| !!!.||||||:!!!!...!|||||||||| eLeuHisIleValGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyL 1242753 : ACTTCATATAGTACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGAT : 1242697 375 : euPheValLeuAsnIleGluAsnPheGlySerIle : 385 ||!:!! !:!!|||||||||||||||||||||:!! euTyrGluMetAsnIleGluAsnPheGlySerVal 1242696 : TATACGAAATGAACATTGAGAATTTTGGATCAGTA : 1242662 vulgar: NvOr156 336 385 . KQ414851.1 1242808 1242661 - 120 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242662 1242808 120 - . gene_id 2 ; sequence NvOr156 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1242662 1242808 . - . KQ414851.1 exonerate:protein2genome:local exon 1242662 1242808 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242662 1242808 120 - . alignment_id 2 ; Query NvOr156 ; Align 1242809 337 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr156 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 340 -> 385 Target range: 1233381 -> 1233246 341 : TyrPheSerGluTrpTyrAsnLeuProLeuAsnAlaArgLysLeuIleGlnLeuIl : 359 |||! !||| !||||||!!.:!!||| !!!. !!:!::!:!!||| ! !!! TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMe 1233381 : TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGAT : 1233327 360 : eIleHisArgSerLeuAsnProCysGlnPheThrAlaGlyGlyLeuPheValLeuA : 378 : ! |||:!!|||!!.|||||| !!.|||||||||||||||!:!! !:!!| tGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetA 1233326 : GCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGA : 1233270 379 : snIleGluAsnPheGlySerIle : 385 ||!!:|||||||||!.!!:!:!! snMetGluAsnPheAlaAsnVal 1233269 : ACATGGAGAACTTTGCAAACGTT : 1233247 vulgar: NvOr156 340 385 . KQ414851.1 1233381 1233246 - 112 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233247 1233381 112 - . gene_id 3 ; sequence NvOr156 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1233247 1233381 . - . KQ414851.1 exonerate:protein2genome:local exon 1233247 1233381 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233247 1233381 112 - . alignment_id 3 ; Query NvOr156 ; Align 1233382 341 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr156 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 131 -> 221 Target range: 1224300 -> 1224030 132 : PheTyrMetGlyAlaSerTyrValAlaLeuValValTyrThrAlaSerProValLe : 150 ...::: :!!! !!:::!!!.!|||:!!||||||! !::!! !|||:!!:! IlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLeuIl 1224300 : attttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGAT : 1224246 151 : uValProIleIleLeuAspIleAlaLeuProLeuAsnGluSerArgArgLysThrP : 169 ! !||| :!!||||||:!!!.! !||||||||||||!!!|||! !:::! !. eAsnPro---ValLeuAspValValAlaProLeuAsnGluThrArgProArgArgL 1224245 : AAATCCG---GTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGC : 1224192 170 : heProTyrPheIleGluTyr<->PheIleAspThrGluPheTyrTyrTyrGlnLeu : 186 !! ! ! :!!...||| ||||||||| ! ! :!!!:!|||...:!! euLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerVal 1224191 : TTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTG : 1224138 187 : MetValHisGlyThrIleCysPheThrIleSerValLeuValTyrIleSerIleAs : 205 ! !!||| ! !! ! !! ! ! ! !!!!! !:!!:!! |||:!!:!:|| AsnPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAs 1224137 : AATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGA : 1224081 206 : pThrMetTyrAlaAlaCysCysGlnHisLeuCysGlyLeuPheAspIle : 221 |! !:!:||| !.!! ! ! ||||||||||||||||||! :!: pMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaVal 1224080 : TATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: NvOr156 131 221 . KQ414851.1 1224300 1224030 - 109 M 21 63 G 1 0 M 22 66 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224300 109 - . gene_id 4 ; sequence NvOr156 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224300 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224300 . - . insertions 3 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224300 109 - . alignment_id 4 ; Query NvOr156 ; Align 1224301 132 63 ; Align 1224238 154 66 ; Align 1224169 176 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr156 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 340 -> 385 Target range: 1228545 -> 1228410 341 : TyrPheSerGluTrpTyrAsnLeuProLeuAsnAlaArgLysLeuIleGlnLeuIl : 359 |||! !||| !||||||!!.:!! !! !!!. !!:!::!:!!||| ! :!!!! TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 360 : eIleHisArgSerLeuAsnProCysGlnPheThrAlaGlyGlyLeuPheValLeuA : 378 : ! |||:!!|||!!.|||||| !!.|||||||||||||||!:!! !:!!| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 379 : snIleGluAsnPheGlySerIle : 385 ||!!:|||||||||!.!!:!:!! snMetGluAsnPheAlaAsnVal 1228433 : ACATGGAGAACTTTGCAAACGTT : 1228411 vulgar: NvOr156 340 385 . KQ414851.1 1228545 1228410 - 106 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1228545 106 - . gene_id 5 ; sequence NvOr156 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228411 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1228545 106 - . alignment_id 5 ; Query NvOr156 ; Align 1228546 341 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr159 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 149 -> 221 Target range: 1243821 -> 1243605 150 : IleAlaProAlaValLeuAspIleValIleProLeuAsnGluSerArgLysLysTh : 168 :!! !||| !!:!!||||||:!!||| !||||||||||||!!!|||...::!! LeuIleProProIleLeuAspValValSerProLeuAsnGluThrArgSerArgIl 1243821 : TTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGAT : 1243767 169 : rPheProTyrTyrAlaGluTyrPheIleAspAspGluAlaTyrTyrTyrGlnLeuM : 187 ! :::|||.!..!!||| ||| :::|||...||| eGluValIleLysLeuGlnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuT 1243766 : AGaagtaataaaattgcaataccTGTTCGACAtggagaagaatttttattcattat : 1243710 188 : etGlyHisGlyThrIleValPheThrValSerValMetValTyrValSerIleAsp : 205 ! !:!! ! ! !! !:!!!!!:!!|||||| :!!!!!|||||| yrValTyrThrGlyTrpCysSerPheMetThrMetMetValIleIleThrIleAsp 1243709 : acGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGAC : 1243656 206 : ThrMetTyrAlaCysCysAlaGlnHisLeuCysGlyLeuPheSerIle : 221 .!!:!:|||!.! ! !!!.||| !||||||||||||:!!:!! AlaLeuTyrValValIleIleHisHisThrCysGlyLeuPheAlaVal 1243655 : GCGTTATATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCTGTT : 1243606 vulgar: NvOr159 149 221 . KQ414851.1 1243821 1243605 - 126 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243821 126 - . gene_id 1 ; sequence NvOr159 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243821 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243821 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243821 126 - . alignment_id 1 ; Query NvOr159 ; Align 1243822 150 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr159 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 339 -> 384 Target range: 1228545 -> 1228410 340 : TyrPheSerGluTrpTyrAsnValSerLeuLysSerArgLysLeuIleLysPheVa : 358 |||! !||| !||||||!!.|||||| !|||! !!:!::!:!!||| ! .!.:! TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 359 : lMetHisArgSerLeuAsnProCysGlnPheThrAlaGlyGlyLeuPheValMetA : 377 !... |||:!!|||!!.|||||| !!.|||||||||||||||!:!! !|||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 378 : snMetGluAsnPheGlySerIle : 384 ||||||||||||||!.!!:!:!! snMetGluAsnPheAlaAsnVal 1228433 : ACATGGAGAACTTTGCAAACGTT : 1228411 vulgar: NvOr159 339 384 . KQ414851.1 1228545 1228410 - 126 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1228545 126 - . gene_id 2 ; sequence NvOr159 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228411 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1228545 126 - . alignment_id 2 ; Query NvOr159 ; Align 1228546 340 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr159 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 339 -> 384 Target range: 1233381 -> 1233246 340 : TyrPheSerGluTrpTyrAsnValSerLeuLysSerArgLysLeuIleLysPheVa : 358 |||! !||| !||||||!!.||| !! !|||! !!:!::!:!!||| ! :! TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMe 1233381 : TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGAT : 1233327 359 : lMetHisArgSerLeuAsnProCysGlnPheThrAlaGlyGlyLeuPheValMetA : 377 !... |||:!!|||!!.|||||| !!.|||||||||||||||!:!! !|||| tGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetA 1233326 : GCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGA : 1233270 378 : snMetGluAsnPheGlySerIle : 384 ||||||||||||||!.!!:!:!! snMetGluAsnPheAlaAsnVal 1233269 : ACATGGAGAACTTTGCAAACGTT : 1233247 vulgar: NvOr159 339 384 . KQ414851.1 1233381 1233246 - 120 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233247 1233381 120 - . gene_id 3 ; sequence NvOr159 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1233247 1233381 . - . KQ414851.1 exonerate:protein2genome:local exon 1233247 1233381 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233247 1233381 120 - . alignment_id 3 ; Query NvOr159 ; Align 1233382 340 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr159 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 130 -> 221 Target range: 1224303 -> 1224030 131 : LeuSerTyrMetValAlaAlaTyrSerAlaLeuValValTyrSerThrMetProAl : 149 ||| ::: :!! !!::! !!.!|||:!!||||||! !!:!.!.||| LeuIlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLe 1224303 : ttaattttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATT : 1224249 150 : aIleAlaProAlaValLeuAspIleValIleProLeuAsnGluSerArgLysLysT : 168 !||| !||| |||||||||:!!||| ||||||||||||!!!||| :::! uIleAsnPro---ValLeuAspValValAlaProLeuAsnGluThrArgProArgA 1224248 : GATAAATCCG---GTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTA : 1224195 169 : hrPheProTyrTyrAlaGluTyr<->PheIleAspAspGluAlaTyrTyrTyrGln : 185 !.!! ! ! !.!...||| |||||||||!!: ! ! !:!!!:!|||... rgLeuLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSer 1224194 : GGCTTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGC : 1224141 186 : LeuMetGlyHisGlyThrIleValPheThrValSerValMetValTyrValSerIl : 204 :!!! !||| ! !! ! ! ! ! ! !!!!! !|||:!! :!!:!!:! ValAsnPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaVa 1224140 : GTGAATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGT : 1224084 205 : eAspThrMetTyrAlaCysCysAlaGlnHisLeuCysGlyLeuPheSerIle : 221 :|||! !:!:||| ! ! ! ! ||||||||||||||||||:!!:!: lAspMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaVal 1224083 : GGATATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: NvOr159 130 221 . KQ414851.1 1224303 1224030 - 118 M 22 66 G 1 0 M 22 66 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224303 118 - . gene_id 4 ; sequence NvOr159 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224303 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224303 . - . insertions 3 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224303 118 - . alignment_id 4 ; Query NvOr159 ; Align 1224304 131 66 ; Align 1224238 154 66 ; Align 1224169 176 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr159 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 335 -> 384 Target range: 1242808 -> 1242661 336 : MetAsnSerAlaTyrPheSerGluTrpTyrAsnValSerLeuLysSerArgLysLe : 354 ......!:! !||| !||| !||||||.!...! !!:!! !! !!:!|||:! PheThrAsnArgTyrAsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIl 1242808 : tttaccAATAGATATAACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAAT : 1242754 355 : uIleLysPheValMetHisArgSerLeuAsnProCysGlnPheThrAlaGlyGlyL : 373 !:!! ! .!.|||... |||||| !!!.||||||:!!!!...!|||||||||| eLeuHisIleValGlnIleArgSerGlyLysProCysLysLeuValAlaGlyGlyL 1242753 : ACTTCATATAGTACAAATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGAT : 1242697 374 : euPheValMetAsnMetGluAsnPheGlySerIle : 384 ||!:!! !||||||!!:|||||||||||||||:!! euTyrGluMetAsnIleGluAsnPheGlySerVal 1242696 : TATACGAAATGAACATTGAGAATTTTGGATCAGTA : 1242662 vulgar: NvOr159 335 384 . KQ414851.1 1242808 1242661 - 114 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242662 1242808 114 - . gene_id 5 ; sequence NvOr159 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1242662 1242808 . - . KQ414851.1 exonerate:protein2genome:local exon 1242662 1242808 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242662 1242808 114 - . alignment_id 5 ; Query NvOr159 ; Align 1242809 336 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr159 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 138 -> 221 Target range: 1234314 -> 1234065 139 : SerAlaLeuValValTyrSerThrMetProAlaIleAlaProAlaValLeuAspIl : 157 ||| !:!!||||||!:! ! !:!:||| !:!! !||| !!||||||:! SerPheMetValValPheLeuLeuValProLeuValPhePro---PheLeuAspVa 1234314 : TCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCA---TTCTTGGATGT : 1234263 158 : eValIleProLeuAsnGluSerArgLysLysThrPheProTyrTyrAlaGluTyrP : 176 !|||:!!||||||||||||!!!||| !::! ! !!:! !.!.!.|||. lValLeuProLeuAsnGluThrArgProArgGlnGlnGlyPheArgValAsnTyrL 1234262 : CGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACTATC : 1234206 177 : heIleAspAspGluAla<->TyrTyrTyrGlnLeuMetGlyHisGlyThrIleVal : 193 !. ! !||||||||| |||!:!!:!...:!! !!!. !.!! ! ! euTyrPheAspGluAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrpGly 1234205 : TATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGT : 1234152 194 : PheThrValSerValMetValTyrValSerIleAspThrMetTyrAlaCysCysAl : 212 ..!||| !||||||:!! :!!!!!:!!|||:!!:!!||| ! AlaValValValValMetIleIleIleThrValAspSerLeuTyrMetIleIleIl 1234151 : GCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGATAATAAT : 1234095 213 : aGlnHisLeuCysGlyLeuPheSerIle : 221 !!!.||| ! !!|||:!!|||:!!:!: eHisHisAlaSerGlyMetPheAlaVal 1234094 : TCACCATGCCAGCGGAATGTTCGCCGTG : 1234066 vulgar: NvOr159 138 221 . KQ414851.1 1234314 1234065 - 105 M 14 42 G 1 0 M 28 84 G 0 3 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234066 1234314 105 - . gene_id 6 ; sequence NvOr159 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234066 1234314 . - . KQ414851.1 exonerate:protein2genome:local exon 1234066 1234314 . - . insertions 3 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1234066 1234314 105 - . alignment_id 6 ; Query NvOr159 ; Align 1234315 139 42 ; Align 1234273 154 84 ; Align 1234186 182 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr146 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 338 -> 385 Target range: 1228551 -> 1228410 339 : TyrThrTyrAsnAsnGluTrpTyrAsnLeuSerGluLysSerLysThrLeuLeuLy : 357 |||! !|||::!::! !||||||!!.:!!|||! !|||! !:!! !:!!:!! ! TyrArgTyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTy 1228551 : TACAGATACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTA : 1228497 358 : sPheMetMetLeuArgCysMetLysProCysCysLeuThrAlaAlaGlyLeuTyrV : 376 .!.|||...:!!|||..!:!:||||||||| !|||||||||!.!|||||||||! rMetMetGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrG 1228496 : CATGATGCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACG : 1228440 377 : alMetAsnPheGluAsnTyrGlyAlaIle : 385 !||||||.!.||||||!:!!.! !:!! luMetAsnMetGluAsnPheAlaAsnVal 1228439 : AAATGAACATGGAGAACTTTGCAAACGTT : 1228411 vulgar: NvOr146 338 385 . KQ414851.1 1228551 1228410 - 128 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1228551 128 - . gene_id 1 ; sequence NvOr146 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228411 1228551 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228551 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1228551 128 - . alignment_id 1 ; Query NvOr146 ; Align 1228552 339 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr146 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 338 -> 385 Target range: 1233387 -> 1233246 339 : TyrThrTyrAsnAsnGluTrpTyrAsnLeuSerGluLysSerLysThrLeuLeuLy : 357 |||! !|||::!::! !||||||!!.:!! !!! !|||! !:!! !:!!:!! ! TyrArgTyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTy 1233387 : TACAGATACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTA : 1233333 358 : sPheMetMetLeuArgCysMetLysProCysCysLeuThrAlaAlaGlyLeuTyrV : 376 |||...:!!|||..!:!:||||||||| !|||||||||!.!|||||||||! rThrMetGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrG 1233332 : CACGATGCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATG : 1233276 377 : alMetAsnPheGluAsnTyrGlyAlaIle : 385 !||||||.!.||||||!:!!.! !:!! luMetAsnMetGluAsnPheAlaAsnVal 1233275 : AAATGAACATGGAGAACTTTGCAAACGTT : 1233247 vulgar: NvOr146 338 385 . KQ414851.1 1233387 1233246 - 121 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233247 1233387 121 - . gene_id 2 ; sequence NvOr146 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1233247 1233387 . - . KQ414851.1 exonerate:protein2genome:local exon 1233247 1233387 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233247 1233387 121 - . alignment_id 2 ; Query NvOr146 ; Align 1233388 339 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr145 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 338 -> 385 Target range: 1228551 -> 1228410 339 : TyrThrTyrAsnAsnGluTrpTyrAsnLeuSerAlaGluSerLysThrLeuLeuHi : 357 |||! !|||::!::! !||||||!!.:!!||||||:!!! !:!! !:!!:!!:! TyrArgTyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTy 1228551 : TACAGATACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTA : 1228497 358 : sPheMetMetLeuArgCysIleAsnProCysCysLeuThrAlaAlaGlyLeuTyrV : 376 !.!.|||...:!!|||..!:!!!!.|||||| !|||||||||!.!|||||||||! rMetMetGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrG 1228496 : CATGATGCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACG : 1228440 377 : alMetAsnPheGluAsnTyrGlyAlaIle : 385 !||||||.!.||||||!:!!.! !:!! luMetAsnMetGluAsnPheAlaAsnVal 1228439 : AAATGAACATGGAGAACTTTGCAAACGTT : 1228411 vulgar: NvOr145 338 385 . KQ414851.1 1228551 1228410 - 128 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1228551 128 - . gene_id 1 ; sequence NvOr145 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228411 1228551 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228551 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1228551 128 - . alignment_id 1 ; Query NvOr145 ; Align 1228552 339 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr145 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 338 -> 385 Target range: 1233387 -> 1233246 339 : TyrThrTyrAsnAsnGluTrpTyrAsnLeuSerAlaGluSerLysThrLeuLeuHi : 357 |||! !|||::!::! !||||||!!.:!! !!|||:!!! !:!! !:!!:!!:! TyrArgTyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTy 1233387 : TACAGATACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTA : 1233333 358 : sPheMetMetLeuArgCysIleAsnProCysCysLeuThrAlaAlaGlyLeuTyrV : 376 ! |||...:!!|||..!:!!!!.|||||| !|||||||||!.!|||||||||! rThrMetGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrG 1233332 : CACGATGCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATG : 1233276 377 : alMetAsnPheGluAsnTyrGlyAlaIle : 385 !||||||.!.||||||!:!!.! !:!! luMetAsnMetGluAsnPheAlaAsnVal 1233275 : AAATGAACATGGAGAACTTTGCAAACGTT : 1233247 vulgar: NvOr145 338 385 . KQ414851.1 1233387 1233246 - 121 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233247 1233387 121 - . gene_id 2 ; sequence NvOr145 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1233247 1233387 . - . KQ414851.1 exonerate:protein2genome:local exon 1233247 1233387 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233247 1233387 121 - . alignment_id 2 ; Query NvOr145 ; Align 1233388 339 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr156 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 334 -> 393 Target range: 292398 -> 292575 335 : AsnValMetAsnSerAlaTyrPheSerGluTrpTyrAsnLeuProLeuAsnAlaArgL : 354 .!.:!! !:!!:!!:!!||| !!!!|||||||||||||||||| !... ! !: GluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgArgLysAlaA 292399 : GAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGGCTC : 292456 355 : ysLeuIleGlnLeuIleIleHisArgSerLeuAsnProCysGlnPheThrAlaGlyGl : 373 :: !||| |||:!::!! !! !!!! !:!!||| !:!!.!!||||||||| rgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuThrAlaGlyLy 292457 : GTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGGCAA : 292513 374 : yLeuPheValLeuAsnIleGluAsnPheGlySerIleMetLysSerSerMetSerTyr : 392 !:!!|||||||||::::!:.!.!.!||||||:!!:!! :!!|||!.!:!: !! sIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSerLysLeuValLeu 292514 : AATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCAAAACTAGTCTTG : 292570 393 : Ile : 393 ||| Ile 292571 : ATA : 292575 vulgar: NvOr156 334 393 . KQ414889.1 292398 292575 + 112 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292399 292575 112 + . gene_id 1 ; sequence NvOr156 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292399 292575 . + . KQ414889.1 exonerate:protein2genome:local exon 292399 292575 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292399 292575 112 + . alignment_id 1 ; Query NvOr156 ; Align 292399 335 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr152PSE Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 166 -> 245 Target range: 3021 -> 3320 167 : PheValIleGlySerLeuValHisPheLeuPheIleSerTrpProGlyGlnLeuValIleAs : 187 |||:!!:!: !..!|||||||||.!.|||!:!:!!!!! ! !||||||!!!|||||||| PheIleValIleGlnLeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAs 3022 : TTTATCGTGATTCAATTGGTACACATACTTTACCTAACTCTTCAAGGACAATTCGTGATCGA : 3082 188 : pHisSerAsnAspLeuPheValSer{Va} >>>> Target Intron 1 >>>> {l}T : 197 | !:!.!.!!::!!|||! !|||{:!} 62 bp {!}| pAlaAsnGluGluIlePheGluSer{Il}++ ++{e}T 3083 : CGCGAACGAGGAAATCTTCGAATCG{AT}gt.........................ag{A}T : 3174 198 : yrAlaAsnGluTrpTyrValIleSerAlaArgAlaLysThrLeuLeuLysIleValMetLeu : 217 ||::! ! !|||||| !! !..! !|||.!!:!!:!!|||!!! !:!!!.!:!: ! yrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeuArg 3175 : ACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGTTAAGA : 3234 218 : ArgCysIleLysProCysIleLeuThrAlaGlyGlyLeuTyrValMetSerLeuGluAsnPh : 238 !.!|||:!!... !! ! !:!!||||||||||||||| !..!|||!:!|||:!!!:!|| AsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGlnSerPh 3235 : AATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAAAGTTT : 3297 239 : eGlyValIleLeuLysSerAla : 245 |..!! !:!! !:::|||:!! eSerGluValThrArgSerSer 3298 : CTCAGAGGTAACACGTTCATCG : 3320 vulgar: NvOr152PSE 166 245 . KQ414921.1 3021 3320 + 141 M 29 87 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 3022 3320 141 + . gene_id 1 ; sequence NvOr152PSE ; gene_orientation + KQ414921.1 exonerate:protein2genome:local cds 3022 3110 . + . KQ414921.1 exonerate:protein2genome:local exon 3022 3110 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 3111 3112 . + . intron_id 1 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 3111 3172 . + . intron_id 1 KQ414921.1 exonerate:protein2genome:local splice3 3171 3172 . + . intron_id 0 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 3173 3320 . + . KQ414921.1 exonerate:protein2genome:local exon 3173 3320 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 3022 3320 141 + . alignment_id 1 ; Query NvOr152PSE ; Align 3022 167 87 ; Align 3174 197 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr154 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 127 -> 220 Target range: 1623 -> 1902 128 : IleIleProIleAsnIleIleLeuValIleTyrIleSerLeuProLeuLeuProLeuLeuLe : 148 |||:!: ! ! !:!! !:!!:!!:!:!:!:!:||| !|||:!! !|||! !:!!|| IleValAsnAlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLe 1624 : ATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTT : 1684 149 : uAspValIleAspProGlnAsnGluThrArgProLysGlnPheProTyrPheAlaGluTyrP : 169 ||||:!!:!! |||:!!||||||:!!||| ! ! !!:! !||| ||| ! |||| uAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrP 1685 : GGACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATT : 1747 170 : heIleAspAspGlnLysTyrTyrPheGluLeuThrIleHisGlyTrpIleValCysIleLeu : 189 ||! !|||!!:!!.|||||| !! ! ! :!!! !! ||| ! ! !||| !:!::!! heThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuVal 1748 : TCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTG : 1807 190 : SerValGlnIleTyrGlyThrPheAspThrThrTyrThrGlnCysValGlnHisAlaCysGl : 210 ! !! ! :!:||| !.!!! !||||||!:!|||! ! ! !|||||||||!.!||||| ValPheTyrValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGl 1808 : GTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGG : 1870 211 : yLeuPheGlyIleValGluGlnArgLeuArg : 220 ||||!!.!.!:!: !! ::::::||| yLeuLeuAlaValSerGly***LysIleArg 1871 : ATTGTTGGCCGTGTCCGGgtaaaaaattcga : 1902 vulgar: NvOr154 127 220 . KQ414921.1 1623 1902 + 157 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1624 1902 157 + . gene_id 1 ; sequence NvOr154 ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1624 1902 . + . KQ414921.1 exonerate:protein2genome:local exon 1624 1902 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1624 1902 157 + . alignment_id 1 ; Query NvOr154 ; Align 1624 128 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr150CTE Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 306 -> 373 Target range: 3036 -> 3299 307 : MetIleHisLeuLeuTyrLeuSerTyrProGlyGlnLysValLeuAspTyrSerSerSerIl : 327 :!!:!!|||:!!|||||||||!!! !! !|||||| |||:!!||| !:!..!..!|| LeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAspAlaAsnGluGluIl 3037 : TTGGTACACATACTTTACCTAACTCTTCAAGGACAATTCGTGATCGACGCGAACGAGGAAAT : 3097 328 : eCysGlnGlu{Se} >>>> Target Intron 1 >>>> {r}TyrThrAsnGluTrpT : 337 |! !:!!..!{! } 62 bp {!}|||!:! ! !|||| ePheGluSer{Il}++ ++{e}TyrSerAlaLeuTrpT 3098 : CTTCGAATCG{AT}gt.........................ag{A}TACAGCGCTTTGTGGT : 3189 338 : yrLeuIleSerLysLysSerLysIleLeuLeuLysPheMetMetLeuArgCysIleLysPro : 357 || !! !..!|||!:!!!!:!! |||!!! !!!. !:!: !!.!|||:!!... !! yrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeuArgAsnCysLeuSerAla 3190 : ATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGTTAAGAAATTGTCTATCTGCT : 3249 358 : SerValLeuThrAlaGlyGlyLeuTyrIleMetAsnTyrGluAsnTyr : 373 !! !:!!||||||||||||||| !! !||||||! :!!!:!!:! ProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGlnSerPhe 3250 : CCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAAAGTTTC : 3299 vulgar: NvOr150CTE 306 373 . KQ414921.1 3036 3299 + 111 M 24 72 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 3037 3299 111 + . gene_id 1 ; sequence NvOr150CTE ; gene_orientation + KQ414921.1 exonerate:protein2genome:local cds 3037 3110 . + . KQ414921.1 exonerate:protein2genome:local exon 3037 3110 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 3111 3112 . + . intron_id 1 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 3111 3172 . + . intron_id 1 KQ414921.1 exonerate:protein2genome:local splice3 3171 3172 . + . intron_id 0 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 3173 3299 . + . KQ414921.1 exonerate:protein2genome:local exon 3173 3299 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 3037 3299 111 + . alignment_id 1 ; Query NvOr150CTE ; Align 3037 307 72 ; Align 3174 332 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr156 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 294 -> 396 Target range: 807272 -> 807578 295 : IleValIleAsnLeuAspAspThrAsnGlnIleIleArgLeuSerIleLeuTyrIleA : 314 :!!!.!:!:!:! ! ! |||!.! ! ! !:!:||| !! !:!!||| :!:. ValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuMetValT 807273 : GTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGATGGTGA : 807330 315 : laPheSerPheHisLeuPhePheAsnSerValProGlyGlnLysIleHisAspLysSe : 333 !!!!. !.!!!!.|||!:!.!! !!:!! ! !!|||.!.! !:!!.!....::!!! hrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgTh 807331 : CTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAAC : 807387 334 : rValAsnValMetAsnSerAlaTyrPheSerGluTrpTyrAsnLeuProLeuAsnAla : 352 !! !.!.:!! .!.:!!|||||| !||| ||||||..!! !! ! !:!!||| rGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAla 807388 : CGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCA : 807444 353 : ArgLysLeuIleGlnLeuIleIleHisArgSerLeuAsnProCysGlnPheThrAlaG : 372 !!:! !:!!! |||||||||||||||.!! !:::|||! !!::.!.||||||| AlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaG 807445 : GCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCG : 807504 373 : lyGlyLeuPheValLeuAsnIleGluAsnPheGlySerIleMetLysSerSerMetSe : 391 || !!!! !! !:!!|||:!! !.!||| !..!|||:!!|||:!!||| || lyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySe 807505 : GAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTC : 807561 392 : rTyrIleThrValLeu : 396 ||||:!::!!|||:!! rTyrLeuSerValMet 807562 : GTATCTGTCTGTAATG : 807578 vulgar: NvOr156 294 396 . KQ414940.1 807272 807578 + 135 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807273 807578 135 + . gene_id 1 ; sequence NvOr156 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807273 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807273 807578 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807273 807578 135 + . alignment_id 1 ; Query NvOr156 ; Align 807273 295 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr159 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 151 -> 222 Target range: 32533 -> 32746 152 : ProAlaValLeuAspIleValIleProLeuAsnGluSerArgLysLysThrPheProTyr : 171 ||| !:!!:!!|||:!::!! |||||||||||||||||| ! ! ..!.!.|||||| ProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyr 32534 : CCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTAC : 32591 172 : TyrAlaGluTyrPheIleAspAspGluAlaTyrTyrTyrGlnLeuMetGlyHisGlyThr : 191 !!.!|||||||||:!!|||...::: |||::: !:!! ! !||| ! ! AlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeu 32592 : GCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTC : 32651 192 : IleValPheThrValSerValMetValTyrValSerIleAspThrMetTyrAlaCysCys : 211 ..! !!|||:!!.!!:!!! !||| !..!:!!:::|||::::::::: GlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePhe 32652 : GGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttc : 32711 212 : AlaGlnHisLeuCysGlyLeuPheSerIleVal : 222 ! |||:!!|||!.! !|||!:!|||:!! MetPheHisValCysAlaLysPheAsnIleLeu 32712 : atGTTCCACGTTTGCGCCAAATTCAATATTCTC : 32746 vulgar: NvOr159 151 222 . KQ415081.1 32533 32746 + 136 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32534 32746 136 + . gene_id 1 ; sequence NvOr159 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32534 32746 . + . KQ415081.1 exonerate:protein2genome:local exon 32534 32746 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32534 32746 136 + . alignment_id 1 ; Query NvOr159 ; Align 32534 152 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr158 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 125 -> 221 Target range: 32461 -> 32746 126 : GlnPhePheThrLysLeuTyrMetGlyAlaAlaTyrGlyAlaLeuIleValTyrValSer : 145 :::|||||| :!! !! ||| !!.!||| !!.!:!!.!! !|||!.!! ! ArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIle 32462 : cgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATA : 32519 146 : ThrProIleIleValProAsnValLeuAspValValIleProLeuAsnGluSerArgAla : 165 ..!! !.!!:!: ||| !!:!!:!!||||||:!! |||||||||||||||||| ! ValGlnPheLeu---ProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHis 32520 : GTGCAATTCCTG---CCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACAC : 32576 166 : LysThrPheProTyrPheIleGluTyrPheIleAspThrGluValTyrTyrTyrGlnLeu : 185 ! ..!.!.|||||| ! !|||||||||:!!||| ::: |||::: !:!! HisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIle 32577 : CATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATC : 32636 186 : MetAlaHisGlyThrLeuCysPheThrIleSerAlaLeuValTyrValSerIleAspThr : 205 ! !||| ! ! ! ! !!|||:!!.!! ! !||| !..!:!!:::|||::: AlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSer 32637 : GCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattca : 32696 206 : MetTyrAlaThrCysSerGlnHisLeuCysSerLeuPheAspValVal : 221 :::::: ! |||:!!|||:!! !|||:!!:!!:!! IlePheIlePhePheMetPheHisValCysAlaLysPheAsnIleLeu 32697 : attttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATTCTC : 32746 vulgar: NvOr158 125 221 . KQ415081.1 32461 32746 + 134 M 24 72 G 1 0 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32462 32746 134 + . gene_id 1 ; sequence NvOr158 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32462 32746 . + . KQ415081.1 exonerate:protein2genome:local exon 32462 32746 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32462 32746 134 + . alignment_id 1 ; Query NvOr158 ; Align 32462 126 72 ; Align 32534 151 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr150CTE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 136 -> 222 Target range: 32488 -> 32746 137 : TyrLeuTyrAlaAlaGlyPheAlaPheSerGlnValSerMetValProValIleLeuAsp : 156 !:!:!!||| !!.! !|||:!!!:!:!! !|||..!.!.:!!||| !|||:!!||| PheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAsp 32489 : TTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGAC : 32546 157 : TyrIleTrpProLeuAsnGluSerArgProLysIleLeuIleValHisAlaGluTyrIle : 176 ||| !||||||||||||||||||! ! ! :!!||| ! !!.!||||||.!! ValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPhe 32547 : GTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTC : 32606 177 : IleAspProLeuGlnTyrTyrPheGluLeuTyrGlyAlaTyrCysIleLeuThrPheVal : 196 :!!||| :::|||:::... !:!! ! ! ! !..! !:!! ValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeu 32607 : GTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTT : 32666 197 : AsnLeuThrValLeuIleSerIleAspThrAlaPheSerSerIleValTyrGlnAsnLeu : 216 ..!||||||||| !! :!!:::|||::: ||| ...::!!:!!!. !! ! GlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCys 32667 : GGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGC : 32726 217 : GlyValPheSerIleVal : 222 !.! !|||!:!|||:!! AlaLysPheAsnIleLeu 32727 : GCCAAATTCAATATTCTC : 32746 vulgar: NvOr150CTE 136 222 . KQ415081.1 32488 32746 + 113 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32489 32746 113 + . gene_id 1 ; sequence NvOr150CTE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32489 32746 . + . KQ415081.1 exonerate:protein2genome:local exon 32489 32746 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32489 32746 113 + . alignment_id 1 ; Query NvOr150CTE ; Align 32489 137 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr156 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 149 -> 222 Target range: 32527 -> 32746 150 : LeuValProIleIleLeuAspIleAlaLeuProLeuAsnGluSerArgArgLysThrPhe : 169 !!!:!!||| !|||:!!|||:!: ! !||||||||||||||||||!.! ! ..!.!. PheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHisValLeu 32528 : TTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTG : 32585 170 : ProTyrPheIleGluTyrPheIleAspThrGluPheTyrTyrTyrGlnLeuMetValHis : 189 |||||| ! !|||||||||:!!||| ::: |||::: !:!! !:!!||| ProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHis 32586 : CCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCAC : 32645 190 : GlyThrIleCysPheThrIleSerValLeuValTyrIleSerIleAspThrMetTyrAla : 209 ! ! ! !!|||:!!.!!:!! !||| !! :!!:::|||::::::::: MetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIle 32646 : ATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcata : 32705 210 : AlaCysCysGlnHisLeuCysGlyLeuPheAspIleVal : 222 |||:!!|||!.! !|||:!!|||:!! PhePheMetPheHisValCysAlaLysPheAsnIleLeu 32706 : ttcttcatGTTCCACGTTTGCGCCAAATTCAATATTCTC : 32746 vulgar: NvOr156 149 222 . KQ415081.1 32527 32746 + 133 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32528 32746 133 + . gene_id 1 ; sequence NvOr156 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32528 32746 . + . KQ415081.1 exonerate:protein2genome:local exon 32528 32746 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32528 32746 133 + . alignment_id 1 ; Query NvOr156 ; Align 32528 150 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr157 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 134 -> 215 Target range: 32503 -> 32746 135 : LeuValGlyTyrLeuLeuValProPheThrProMetLeuLeuAspLeuIleAspProLeu : 154 :!! !!..!||| !:!!|||! !||| !||| :!!:!!|||:!!|||! |||||| IlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeu 32504 : ATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTA : 32561 155 : AsnGluThrArgProLysAlaPheProTyrPheAlaGluTyrPheIleAspAsnGlnLys : 174 ||||||:!!|||! ! ! !.!.!.|||||| !!.!|||||||||:!!|||...|||||| AsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLys 32562 : AACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaa : 32621 175 : TyrTyrPheGluLeuThrValHisGlyTrpIleIleCysIleLeuSerValGlnIleTyr : 194 |||:::... !:!!.!!:!!||| ! ! ! !! !|||.!!:!! !:!! ! TyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAla 32622 : tatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCC : 32681 195 : GlyThrPheAspAlaThrTyrThrGlnLeuValGlnHisSerCysAlaLeuPheAlaIle : 214 !.!! |||::: ::: ...::! ||| !|||||| !||| !||| ThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32682 : ACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32741 215 : Val : 215 :!! Leu 32742 : CTC : 32746 vulgar: NvOr157 134 215 . KQ415081.1 32503 32746 + 149 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32504 32746 149 + . gene_id 1 ; sequence NvOr157 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32504 32746 . + . KQ415081.1 exonerate:protein2genome:local exon 32504 32746 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32504 32746 149 + . alignment_id 1 ; Query NvOr157 ; Align 32504 135 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr162 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 152 -> 229 Target range: 32515 -> 32746 153 : CysLeuProSerPheGlyProValIleMetAsnIleLeuLeuProLeuAsnGluThrArg : 172 ...:!! !..!||| !||| !|||!!::!!:!::!! !||||||||||||:!!||| AlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArg 32516 : GCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGA : 32573 173 : GlnLysArgIleProAlaProAlaGluTyrPheValAspGluGluLysTyrPheTyrIle : 192 !!. ! !:!:||| ! !!!.!|||||||||||||||::::::||||||||| ! HisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuPro 32574 : CACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccA : 32633 193 : LeuPheSerHisGlyMetIleLeuTyrMetLeuValCysValLeuTyrValThrIleAsp : 212 :!! ! !||| !:!: ! !! |||! ! ..!:!! !..!.!!:::||| IleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAsp 32634 : ATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgat : 32693 213 : SerMetTyrSerCysIleValHisHisThrValGlyLeuValGlyIleVal : 229 |||:::::: ...::! !|||..! !!.! ! !!..!|||:!! SerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIleLeu 32694 : tcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATTCTC : 32746 vulgar: NvOr162 152 229 . KQ415081.1 32515 32746 + 113 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32516 32746 113 + . gene_id 1 ; sequence NvOr162 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32516 32746 . + . KQ415081.1 exonerate:protein2genome:local exon 32516 32746 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32516 32746 113 + . alignment_id 1 ; Query NvOr162 ; Align 32516 153 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr152PSE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 0 -> 86 Target range: 32488 -> 32746 1 : TyrMetMetIleAlaGlyLeuGlyPheCysGlnIleProMetIleProIleValLeuAsp : 20 !:!:!: |||!.! !!!!..!!:!... !:!:! !.!.:!:||| !:!!:!!||| PheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAsp 32489 : TTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGAC : 32546 21 : LeuIleMetProLeuAsnGluSerArgProLysIleLeuPheValLysGlyGluTyrIle : 40 :!!||| !||||||||||||||||||! ! ! :!!||| ! |||||||||.!! ValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPhe 32547 : GTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTC : 32606 41 : IleAspProPheLysHisPheTyrLysLeuTyrValTyrPheAlaIleThrSerLeuThr : 60 :!!||| |||:::||| !:!! :!!:!!.!. ! ||| ! ! ! ValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeu 32607 : GTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTT : 32666 61 : ThrValThrValValSerAlaIleAspThrThrTyrThrAlaCysValHisGlnIleLeu : 80 !:!!||||||!.!!!!|||:::|||::: ::: ::! !!!.:!!! ! GlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCys 32667 : GGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGC : 32726 81 : AlaIlePheSerIleIle : 86 |||! !|||!:!|||:!! AlaLysPheAsnIleLeu 32727 : GCCAAATTCAATATTCTC : 32746 vulgar: NvOr152PSE 0 86 . KQ415081.1 32488 32746 + 126 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32489 32746 126 + . gene_id 1 ; sequence NvOr152PSE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32489 32746 . + . KQ415081.1 exonerate:protein2genome:local exon 32489 32746 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32489 32746 126 + . alignment_id 1 ; Query NvOr152PSE ; Align 32489 1 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr155INT Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 130 -> 215 Target range: 32491 -> 32746 131 : IleAsnIleIleLeuValGlyTyrIleThrLeuProLeuAlaProMetLeuLeuAspIle : 150 :!! !!||| !:!! !!..!||| !! !:!!! !!!! !||| :!!:!!|||:!: ValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspVal 32492 : GTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTG : 32549 151 : IleAspProLeuAsnGluThrArgProLysAlaPheProTyrPheAlaGluTyrPheIle : 170 |||! ||||||||||||:!!|||! ! ! !.!.!.|||||| !!.!|||||||||:!! IleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPheVal 32550 : ATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTC : 32609 171 : AspAspGlnLysTyrTyrPheGluLeuThrValHisGlyTrpIleValCysIleLeuSer : 190 |||...|||||||||:::... !:!!.!!:!!||| ! ..! !! !|||.!! AspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGly 32610 : GACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGT : 32669 191 : ValGlnIleTyrGlyThrPheAspAlaThrTyrThrGlnLeuValGlnHisSerCysAla : 210 :!! !:!! ! !.!! |||::: ::: ...::! ||| !|||||| LeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAla 32670 : CTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCC : 32729 211 : LeuPheAlaIleVal : 215 !||| !|||:!! LysPheAsnIleLeu 32730 : AAATTCAATATTCTC : 32746 vulgar: NvOr155INT 130 215 . KQ415081.1 32491 32746 + 141 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32492 32746 141 + . gene_id 1 ; sequence NvOr155INT ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32492 32746 . + . KQ415081.1 exonerate:protein2genome:local exon 32492 32746 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32492 32746 141 + . alignment_id 1 ; Query NvOr155INT ; Align 32492 131 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr155INT Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 137 -> 215 Target range: 22065 -> 22299 138 : TyrIleThrLeuProLeuAlaProMetLeuLeuAspIleIleAspProLeuAsnGluThr : 157 !:!:!!||| ! !!||| !|||!!::!!:!! !! !|||.!.|||! !||||||:!! PheValThrAlaThrLeuLeuProIleValMetCysArgIleGlnProArgAsnGluSer 22066 : TTCGTTACAGCGACGCTTCTACCAATCGTAATGTGTAGAATACAGCCACGTAACGAATCT : 22123 158 : ArgProLysAlaPheProTyrPheAlaGluTyrPheIleAspAspGlnLysTyrTyrPhe : 177 !.! ! ! .!!.!!|||!:! ...|||||||||...|||.!.:!!||| !! ! HisValHisThrIleProPheGlnGlyGluTyrPhePheAspGlnGluLysAsnMetVal 22124 : CACGTACACACTATTCCGTTTCAaggggaatattttttcgaccAAGAGAAAAATATGGTG : 22183 178 : GluLeuThrValHisGlyTrpIleValCysIleLeuSerValGlnIleTyrGlyThrPhe : 197 :!!! !:!!||| ! :!!..! !! !:!!!!! ! ||| !! !! ! ! PheIleIleLeuHisMetIleLeuThrValThrIleThrHisCysIleAlaValMetThr 22184 : TTCATTATACTGCACATGATACTCACAGTTACAATCACACATTGCATTGCTGTAATGACT : 22243 198 : AspAlaThrTyrThrGlnLeuValGlnHisSerCysAlaLeuPheAlaIleVal : 215 ||| !! !! ! |||..!..!|||:!!|||||||||||||||:!!||| AspMetIleLeuLeuValLeuThrMetHisAlaCysAlaLeuPheAlaValVal 22244 : GATATGATTTTGCTAGTTTTAACCATGCATGCCTGTGCCTTGTTCGCTGTTGTT : 22299 vulgar: NvOr155INT 137 215 . KQ415081.1 22065 22299 + 110 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 22066 22299 110 + . gene_id 2 ; sequence NvOr155INT ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 22066 22299 . + . KQ415081.1 exonerate:protein2genome:local exon 22066 22299 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 22066 22299 110 + . alignment_id 2 ; Query NvOr155INT ; Align 22066 138 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr154 Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 127 -> 220 Target range: 199 -> 478 128 : IleIleProIleAsnIleIleLeuValIleTyrIleSerLeuProLeuLeuProLeuLeuLeuA : 149 |||:!: ! ! !:!! !:!!:!!:!:!:!:!:||| !|||:!! !|||! !:!!|||| IleValAsnAlaIleValCysValIleLeuPheValSerThrProValThrProHisIleLeuA 200 : ATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGG : 263 150 : spValIleAspProGlnAsnGluThrArgProLysGlnPheProTyrPheAlaGluTyrPheIl : 170 ||:!!:!! |||:!!||||||:!!||| ! ! !!:! !||| ||| ! ||||||! spIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheTh 264 : ACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCAC : 326 171 : eAspAspGlnLysTyrTyrPheGluLeuThrIleHisGlyTrpIleValCysIleLeuSerVal : 191 !|||!!:!!.|||||| !! ! ! :!!! !! ||| ! ! !||| !:!::!! ! !! rAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPhe 327 : CGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTT : 389 192 : GlnIleTyrGlyThrPheAspThrThrTyrThrGlnCysValGlnHisAlaCysGlyLeuPheG : 213 ! :!:||| !.!!! !||||||!:!|||! ! ! !|||||||||!.!|||||||||!!.! TyrValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuA 390 : TACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGG : 455 214 : lyIleValGluGlnArgLeuArg : 220 .!:!: !! ::::::||| laValSerGly***LysIleArg 456 : CCGTGTCCGGgtaaaaaattcga : 478 vulgar: NvOr154 127 220 . LHQN01023902.1 199 478 + 157 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 200 478 157 + . gene_id 1 ; sequence NvOr154 ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 200 478 . + . LHQN01023902.1 exonerate:protein2genome:local exon 200 478 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 200 478 157 + . alignment_id 1 ; Query NvOr154 ; Align 200 128 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr162 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 137 -> 228 Target range: 4966 -> 5236 138 : ThrPheTyrArgValMetAlaValPheAlaLeuSerSerTyrAlaCysLeuProSerPheGl : 158 |||||| ! ! !||| ! !!!...! !:!! !!:! !|||||||||! ! ! .. ThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSe 4967 : ACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTC : 5027 159 : yProValIleMetAsnIleLeuLeuProLeuAsnGluThrArgGlnLysArgIleProAlaP : 179 !||| |||:!!:!!||||||:!!|||||||||||||||||| !::! !.!! ! !| rPro---IleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrP 5028 : GCCG---ATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATC : 5087 180 : roAlaGluTyrPheValAspGluGluLysTyrPheTyrIleLeuPheSerHisGlyMetIle : 199 ||||| ! |||||||||||||||!!:|||||| !|||:!::!! ! .!!||| ! :!! roAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeu 5088 : CAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTT : 5147 200 : LeuTyrMetLeuValCysValLeuTyrValThrIleAspSerMetTyrSerCysIleValHi : 220 :!! :!::!!:!! ! !:!!!:! !.!! !|||:!!! ||| !! ! !|||!! ValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGl 5148 : GTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCA : 5210 221 : sHisThrValGlyLeuValGlyIle : 228 .|||.!! !||||||:!!!.!||| nHisAlaCysGlyLeuLeuAlaIle 5211 : ACACGCTTGCGGATTGTTGGCCATT : 5236 vulgar: NvOr162 137 228 . LHQN01025741.1 4966 5236 + 159 M 22 66 G 1 0 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4967 5236 159 + . gene_id 1 ; sequence NvOr162 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4967 5236 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4967 5236 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 4967 5236 159 + . alignment_id 1 ; Query NvOr162 ; Align 4967 138 66 ; Align 5033 161 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr162 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 108 -> 196 Target range: 8730 -> 9051 109 : GlnIleAlaLysGlnTrpAlaSerIleThrAspGluThrGluCysLysIleLeuAlaAspAs : 129 |||||| ! ! .!.|||.!!||||||! !..!||||||||||||||||||:!!!.! ! ! GlnIlePheAspAsnTrpThrSerIleLysSerGluThrGluCysLysIleMetValThrTy 8731 : CAGATATTCGACAACTGGACGTCGATCAAATCTGAGACGGAATGCAAAATCATGGTAACCTA : 8791 130 : nValLysLeuCysHisProLeuCysThrPheTyrArg{V} >>>> Target Intron 1 : 142 !!.!::! ! ! !!.! !:!!... !! !||| !{!} 60 bp rAlaArgLysGlyGlnLeuIleAlaLeuCysTyrAla{A}++ 8792 : TGCTCGAAAAGGACAACTGATCGCGTTGTGTTACGCA{G}gt.................... : 8833 143 : >>>> {al}MetAlaValPheAlaLeuSerSerTyrAlaCysLeuProSerPheGlyPro : 159 {.!} ! !!.!! !! !:!!! !!:! !|||:!!||| |||!.!||| ++{la}HisLeuPheLeuProAlaAlaIlePheLeuCysValPro---PheAlaPro 8834 : .....ag{CA}CATTTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCT---TTCGCACCG : 8938 160 : ValIleMetAsnIleLeuLeuProLeuAsnGluThrArgGlnLysArgIleProAlaProAl : 180 :!!|||:!!:!!|||! ! !|||||||||:!!||||||:!!::: !.!! ! !||||| IleIleLeuAspIleCysAlaProLeuAsnLysThrArgLysArgAlaPheValTyrProAl 8939 : ATCATCTTGGACATTTGCGCGCCACTGAACAAAACGAGAAAACGTGCGTTCGTTTATCCAGC : 9001 181 : aGluTyrPheValAspGluGluLysTyrPheTyrIleLeuPheSerHis : 196 | ! |||!:::!!||| |||:!!|||!:! |||:!!.!.! !||| aTyrTyrTrpMetAspProGluGlnTyrTyrMetIleMetIleIleHis 9002 : CTATTACTGGATGGATCCTGAGCAATACTACATGATAATGATAATACAC : 9051 vulgar: NvOr162 108 196 . LHQN01025741.1 8730 9051 + 143 M 33 99 S 0 1 5 0 2 I 0 56 3 0 2 S 1 2 M 13 39 G 1 0 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 8731 9051 143 + . gene_id 2 ; sequence NvOr162 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 8731 8830 . + . LHQN01025741.1 exonerate:protein2genome:local exon 8731 8830 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 8831 8832 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 8831 8890 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 8889 8890 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 8891 9051 . + . LHQN01025741.1 exonerate:protein2genome:local exon 8891 9051 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 8731 9051 143 + . alignment_id 2 ; Query NvOr162 ; Align 8731 109 99 ; Align 8893 143 39 ; Align 8932 157 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr151 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 324 -> 376 Target range: 2536 -> 2692 325 : LysGluLeuTyrLeuAsnValTyrSerAsnGluTrpTyrAsnLeuThrLysGluAlaLysTh : 345 :!!||||||!:!:!!..! !|||||| :!!||||||||| !:!! !..!.!!:!!|| GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGlnTh 2537 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAAAC : 2597 346 : rLeuLeuLysIleValMetLeuArgCysLeuLysProSerLysPheThrAlaGlyGlyLeuT : 366 ||||! ! !:!!!.!:!! !||| !!|||! ||| !! !.!!||||||||||||||| rLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGlyLeuI 2598 : TCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGA : 2660 367 : yrThrLeuAsnLeuGluSerPheGlyThrIle : 376 !:!!||||||||||||!!!|||!.! !:!! leSerLeuAsnLeuGluThrPheAlaGluVal 2661 : TTTCCTTGAATTTGGAGACTTTTGCCGAGGTA : 2692 vulgar: NvOr151 324 376 . LHQN01025741.1 2536 2692 + 116 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 2537 2692 116 + . gene_id 1 ; sequence NvOr151 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 2537 2692 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2537 2692 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 2537 2692 116 + . alignment_id 1 ; Query NvOr151 ; Align 2537 325 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr158 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 148 -> 220 Target range: 5020 -> 5236 149 : IleValProAsnValLeuAspValValIleProLeuAsnGluSerArgAlaLysThrPhePr : 169 .!!||| !! :!!||||||:!!:!!!!:||||||||||||!!!||||||::! !||| PheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheVa 5021 : TTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGT : 5081 170 : oTyrPheIleGluTyrPheIleAspThrGluValTyrTyrTyrGlnLeuMetAlaHisGlyT : 190 !||| ! ! ||||||:!!||| !!!: !|||:!!||| !:!!:!:!.!||| ! lTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetT 5082 : CTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGT : 5144 191 : hrLeuCysPheThrIleSerAlaLeuValTyrValSerIleAspThrMetTyrAlaThrCys : 210 !||| ! ..!!!: ! !! !|||!:! !:!! !|||.!!! |||!.! !..! yrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAla 5145 : ATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCC : 5204 211 : SerGlnHisLeuCysSerLeuPheAspVal : 220 !|||||| !|||.!!|||!!.! !:!! ValGlnHisAlaCysGlyLeuLeuAlaIle 5205 : GTGCAACACGCTTGCGGATTGTTGGCCATT : 5236 vulgar: NvOr158 148 220 . LHQN01025741.1 5020 5236 + 134 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5021 5236 134 + . gene_id 1 ; sequence NvOr158 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5021 5236 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5021 5236 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5021 5236 134 + . alignment_id 1 ; Query NvOr158 ; Align 5021 149 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr159 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 141 -> 221 Target range: 4999 -> 5236 142 : ValValTyrSerThrMetProAlaIleAlaProAlaValLeuAspIleValIleProLeuAs : 162 !.!:!!!:!! ! !:!!||| !:!::!!||| :!!|||||||||:!!!!:|||||||| AlaLeuPheMetCysLeuProPheValSerPro---IleLeuAspIleLeuMetProLeuAs 5000 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCG---ATTCTGGACATCCTTATGCCGTTGAA : 5057 163 : nGluSerArgLysLysThrPheProTyrTyrAlaGluTyrPheIleAspAspGluAlaTyrT : 183 ||||!!!||| !::! !||| !||| ||| ! ||||||:!!|||!!:!!: !|||: nGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrH 5058 : CGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATC : 5120 184 : yrTyrGlnLeuMetGlyHisGlyThrIleValPheThrValSerValMetValTyrValSer : 203 !!||| !:!!:!:|||||| ! !:!!||| ! ..!:!! !:!! |||!:! !:!! isTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 5121 : ATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 5180 204 : IleAspThrMetTyrAlaCysCysAlaGlnHisLeuCysGlyLeuPheSerIle : 221 !|||.!!! |||!.!! !..!!.!|||||| !|||||||||!!.:!!||| CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 5181 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 5236 vulgar: NvOr159 141 221 . LHQN01025741.1 4999 5236 + 167 M 11 33 G 1 0 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5000 5236 167 + . gene_id 1 ; sequence NvOr159 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5000 5236 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5000 5236 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 5000 5236 167 + . alignment_id 1 ; Query NvOr159 ; Align 5000 142 33 ; Align 5033 154 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr159 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 174 -> 221 Target range: 11588 -> 11729 175 : TyrPheIleAspAspGluAlaTyrTyrTyrGlnLeuMetGlyHisGlyThrIleValPhe : 194 ||||||:!!|||!!:! !! !||||||||| ! :!!!!: !||||||||| !..! !! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrVal 11589 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTT : 11646 195 : ThrValSerValMetValTyrValSerIleAspThrMetTyrAlaCysCysAlaGlnHis : 214 !:!! !|||:!!|||||| !:!! !||||||! ||| ! !.!|||||| LeuIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHis 11647 : TTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACAC : 11706 215 : LeuCysGlyLeuPheSerIle : 221 !||||||||||||:!!:!: ThrCysGlyLeuPheAlaVal 11707 : ACTTGCGGACTGTTCGCCGTG : 11729 vulgar: NvOr159 174 221 . LHQN01025741.1 11588 11729 + 127 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11589 11729 127 + . gene_id 2 ; sequence NvOr159 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11589 11729 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11589 11729 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11589 11729 127 + . alignment_id 2 ; Query NvOr159 ; Align 11589 175 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr157 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 176 Query range: 137 -> 214 Target range: 5005 -> 5236 138 : TyrLeuLeuValProPheThrProMetLeuLeuAspLeuIleAspProLeuAsnGluThrAr : 158 !:!:!!! !:!!||||||..! !! !:!!||||||:!!:!! ||||||||||||||||| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5006 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5066 159 : gProLysAlaPheProTyrPheAlaGluTyrPheIleAspAsnGlnLysTyrTyrPheGluL : 179 | !!::! !||| !||| ||| ! ||||||:!!|||.!..!.||||||:!!!:! !: gAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuI 5067 : AGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGA : 5129 180 : euThrValHisGlyTrpIleIleCysIleLeuSerValGlnIleTyrGlyThrPheAspAla : 199 !!..!! !||| !!:::!!:!! :!!:!! !:!!...:!!!:! !!.!!! !|||||| leValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 5130 : TCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 5189 200 : ThrTyrThrGlnLeuValGlnHisSerCysAlaLeuPheAlaIle : 214 !.!|||..! ! !|||||||||:!!|||!.!|||!!.|||||| AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 5190 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 5236 vulgar: NvOr157 137 214 . LHQN01025741.1 5005 5236 + 176 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5006 5236 176 + . gene_id 1 ; sequence NvOr157 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5006 5236 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5006 5236 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5006 5236 176 + . alignment_id 1 ; Query NvOr157 ; Align 5006 138 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr157 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 137 -> 214 Target range: 11498 -> 11729 138 : TyrLeuLeuValProPheThrProMetLeuLeuAspLeuIleAspProLeuAsnGluThr : 157 !:!:!!! !||||||!::||| !! |||:!!:!!! ! ! ! !!! !||| !||| PheIleGlnValProTrpThrThrArgLeuValAsnSerTyrLysThrGlnAsnIleThr 11499 : TTCATACAAGTGCCATGGACGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACG : 11556 158 : ArgProLysAlaPheProTyrPheAlaGluTyrPheIleAspAsnGlnLysTyrTyrPhe : 177 ! ! ! ! !||| ! !!.! ! ||||||:!!|||.!. !:!!||||||!:! ProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyrTyr 11557 : CCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTAT : 11616 178 : GluLeuThrValHisGlyTrpIleIleCysIleLeuSerValGlnIleTyrGlyThrPhe : 197 ! :!!! !:!!|||||| ! !! ! !:!::!! !||| !:!:||| !!.!!! ! TyrIleIleLeuHisGlyThrCysThrValLeuIleValValValValTyrCysAlaCys 11617 : TACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 11676 198 : AspAlaThrTyrThrGlnLeuValGlnHisSerCysAlaLeuPheAlaIle : 214 |||.!!!:!|||! ! !||||||||||||!!!|||!.!|||||||||:!: AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaVal 11677 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTG : 11729 vulgar: NvOr157 137 214 . LHQN01025741.1 11498 11729 + 131 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11499 11729 131 + . gene_id 2 ; sequence NvOr157 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11499 11729 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11499 11729 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11499 11729 131 + . alignment_id 2 ; Query NvOr157 ; Align 11499 138 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr157 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 137 -> 182 Target range: 8916 -> 9051 138 : TyrLeuLeuValProPheThrProMetLeuLeuAspLeuIleAspProLeuAsnGluThrAr : 158 !:!|||! !|||||||||.!!|||!!::!!||||||:!! !! |||||||||:!!||||| PheLeuCysValProPheAlaProIleIleLeuAspIleCysAlaProLeuAsnLysThrAr 8917 : TTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTGCGCGCCACTGAACAAAACGAG : 8977 159 : gProLysAlaPheProTyrPheAlaGluTyrPheIleAspAsnGlnLysTyrTyrPheGluL : 179 | !:::|||||| !||| ||| ! |||!::!!:||| !:!!:!!||||||.!. !: gLysArgAlaPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMetIleM 8978 : AAAACGTGCGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATGATAA : 9040 180 : euThrValHis : 182 !!! !:!!||| etIleIleHis 9041 : TGATAATACAC : 9051 vulgar: NvOr157 137 182 . LHQN01025741.1 8916 9051 + 123 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 8917 9051 123 + . gene_id 3 ; sequence NvOr157 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 8917 9051 . + . LHQN01025741.1 exonerate:protein2genome:local exon 8917 9051 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 8917 9051 123 + . alignment_id 3 ; Query NvOr157 ; Align 8917 138 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr156 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 149 -> 221 Target range: 5020 -> 5236 150 : LeuValProIleIleLeuAspIleAlaLeuProLeuAsnGluSerArgArgLysThrPhePr : 170 !!!||| !! |||||||||||| !:!!||||||||||||!!!||| !::! !||| PheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheVa 5021 : TTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGT : 5081 171 : oTyrPheIleGluTyrPheIleAspThrGluPheTyrTyrTyrGlnLeuMetValHisGlyT : 191 !||| ! ! ||||||:!!||| !!!: |||:!!||| !:!!:!:! !||| ! lTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetT 5082 : CTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGT : 5144 192 : hrIleCysPheThrIleSerValLeuValTyrIleSerIleAspThrMetTyrAlaAlaCys : 211 !:!! ! ..!!!: !:!!! !|||!:! !:!! !|||.!!! |||!.! !..! yrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAla 5145 : ATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCC : 5204 212 : CysGlnHisLeuCysGlyLeuPheAspIle : 221 |||||| !|||||||||!!.! !||| ValGlnHisAlaCysGlyLeuLeuAlaIle 5205 : GTGCAACACGCTTGCGGATTGTTGGCCATT : 5236 vulgar: NvOr156 149 221 . LHQN01025741.1 5020 5236 + 135 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5021 5236 135 + . gene_id 1 ; sequence NvOr156 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5021 5236 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5021 5236 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5021 5236 135 + . alignment_id 1 ; Query NvOr156 ; Align 5021 150 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr156 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 149 -> 189 Target range: 8931 -> 9051 150 : LeuValProIleIleLeuAspIleAlaLeuProLeuAsnGluSerArgArgLysThrPhePr : 170 !!!!.!||||||||||||||||||..! !|||||||||:!!!!!|||!:!:::.!!||| PheAlaProIleIleLeuAspIleCysAlaProLeuAsnLysThrArgLysArgAlaPheVa 8932 : TTCGCACCGATCATCTTGGACATTTGCGCGCCACTGAACAAAACGAGAAAACGTGCGTTCGT : 8992 171 : oTyrPheIleGluTyrPheIleAspThrGluPheTyrTyrTyrGlnLeuMetValHis : 189 !||| ! ! |||!::!!:||| !!||| |||||| !:!!!!::!!||| lTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMetIleMetIleIleHis 8993 : TTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATGATAATGATAATACAC : 9051 vulgar: NvOr156 149 189 . LHQN01025741.1 8931 9051 + 100 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 8932 9051 100 + . gene_id 2 ; sequence NvOr156 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 8932 9051 . + . LHQN01025741.1 exonerate:protein2genome:local exon 8932 9051 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 8932 9051 100 + . alignment_id 2 ; Query NvOr156 ; Align 8932 150 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr150CTE Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 293 -> 373 Target range: 2310 -> 2683 294 : MetGlnPheIleArgLeuAlaMetIleGluValGlyValMetIleHisLeuLeuTyrLeuSe : 314 |||:!!||| !!:!! !..! .!! !|||! ! !:!!:!!|||||||||!:!||||| MetGluPheTyrLysTyrCysGlyPheLeuValValGlnLeuValHisLeuLeuPheLeuSe 2311 : ATGGAGTTCTACAAGTATTGCGGTTTCTTGGTGGTGCAACTGGTTCATTTGCTTTTCCTTTC : 2371 315 : rTyrProGlyGlnLysValLeuAspTyrSerSerSerIleCysGlnGlu{Se} >>>> Ta : 331 | !! !|||!!. :!!:!! !! !..!! !! !! !.!..!.{! } rIleGlnGlyHisPheIleIleLeuSerHisAspMetThrTyrAspAsn{Il}++ 2372 : TATCCAGGGACACTTTATTATACTCTCGCATGACATGACTTACGACAAC{AT}gt....... : 2426 332 : rget Intron 1 >>>> {r}TyrThrAsnGluTrpTyrLeuIleSerLysLysSerLys : 344 133 bp {!}|||!:! :!!|||||| !! !||| !!:!!!!:!! ++{e}TyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 2427 : ..................ag{A}TATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 2594 345 : IleLeuLeuLysPheMetMetLeuArgCysIleLysProSerValLeuThrAlaGlyGlyLe : 365 ! !|||! ! !.!. :!! !||| !!:!:! ||| !!:!!||||||||||||||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGlyLe 2595 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACT : 2657 366 : uTyrIleMetAsnTyrGluAsnTyr : 373 | ! !:!!|||! |||!.!!:! uIleSerLeuAsnLeuGluThrPhe 2658 : GATTTCCTTGAATTTGGAGACTTTT : 2683 vulgar: NvOr150CTE 293 373 . LHQN01025741.1 2310 2683 + 105 M 37 111 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 2311 2683 105 + . gene_id 1 ; sequence NvOr150CTE ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 2311 2423 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2311 2423 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 2424 2425 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 2424 2556 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 2555 2556 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 2557 2683 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2557 2683 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 2311 2683 105 + . alignment_id 1 ; Query NvOr150CTE ; Align 2311 294 111 ; Align 2558 332 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr147 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 138 -> 224 Target range: 4978 -> 5236 139 : ValTyrMetAlaAlaAlaGlyValGlyPheCysGlnIleProMetIleProValPheLeuAs : 159 |||:!!!!::!! !..!!.!!.! !||| :!:|||.!.:!: !! !.!!||||| ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAs 4979 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGA : 5039 160 : pPheIleAsnProLeuAsnGluThrArgProLysIleLeuPheValLysAlaGluPheIleP : 180 |.!!:!!! |||||||||||||||||| !!::!:!:!!! !! ! !||| ! !:!.!! pIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheV 5040 : CATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCG : 5102 181 : heAspProTyrLysTyrPheTyrGlnLeuTyrAlaPhePheIleGlyCysAlaAlaSerAla : 200 !!||| ! !!|||||| !||| !:!! !.! !.!. ! ! !.!!.!! ! ! alAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeu 5103 : TCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTT : 5162 201 : ValPheIleValCysSerIleAspThrThrPheThrAlaValValHisGlnIleIleGlyVa : 221 :!!! !:!! !!|||:!! !|||.!!!.!!:!..! !!.!|||!!.!!. ! !|||:! IleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLe 5163 : ATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATT : 5225 222 : lValSerIle : 224 !:!!:!!||| uLeuAlaIle 5226 : GTTGGCCATT : 5236 vulgar: NvOr147 138 224 . LHQN01025741.1 4978 5236 + 104 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4979 5236 104 + . gene_id 1 ; sequence NvOr147 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4979 5236 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4979 5236 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4979 5236 104 + . alignment_id 1 ; Query NvOr147 ; Align 4979 139 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr152PSE Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 8 -> 85 Target range: 5005 -> 5236 9 : PheCysGlnIleProMetIleProIleValLeuAspLeuIleMetProLeuAsnGluSerAr : 29 ||| :!:|||.!.:!: !! :!!||||||:!!:!!|||||||||||||||!!!|| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5006 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5066 30 : gProLysIleLeuPheValLysGlyGluTyrIleIleAspProPheLysHisPheTyrLysL : 50 | !!::!:!:!!! !! ! !!.! ! |||.!!:!!||| ! !|||:!! !||| !: gAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuI 5067 : AGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGA : 5129 51 : euTyrValTyrPheAlaIleThrSerLeuThrThrValThrValValSerAlaIleAspThr : 70 !! ! !:!!.!. !:!!..! !:!!! ! !:!!:!!||| !!!!!||| !|||.!! leValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 5130 : TCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 5189 71 : ThrTyrThrAlaCysValHisGlnIleLeuAlaIlePheSerIle : 85 !.!|||..! !..!|||!!.!!. !! !!.!:!:!!.:!!||| AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 5190 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 5236 vulgar: NvOr152PSE 8 85 . LHQN01025741.1 5005 5236 + 107 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5006 5236 107 + . gene_id 1 ; sequence NvOr152PSE ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5006 5236 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5006 5236 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5006 5236 107 + . alignment_id 1 ; Query NvOr152PSE ; Align 5006 9 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr152PSE Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 189 -> 241 Target range: 2536 -> 2692 190 : AsnAspLeuPheValSerValTyrAlaAsnGluTrpTyrValIleSerAlaArgAlaLysTh : 210 .!.!!:||||||||| !! !|||::! :!!|||||| !! !||| !!|||.!!:!!|| GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGlnTh 2537 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAAAC : 2597 211 : rLeuLeuLysIleValMetLeuArgCysIleLysProCysIleLeuThrAlaGlyGlyLeuT : 231 ||||! ! !:!!!.!:!! !||| !!:!:! ||| :!:|||||||||||||||||| rLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGlyLeuI 2598 : TCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGA : 2660 232 : yrValMetSerLeuGluAsnPheGlyValIle : 241 ! !:!!!:!||||||!.!|||!.!! !:!! leSerLeuAsnLeuGluThrPheAlaGluVal 2661 : TTTCCTTGAATTTGGAGACTTTTGCCGAGGTA : 2692 vulgar: NvOr152PSE 189 241 . LHQN01025741.1 2536 2692 + 105 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 2537 2692 105 + . gene_id 2 ; sequence NvOr152PSE ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 2537 2692 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2537 2692 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 2537 2692 105 + . alignment_id 2 ; Query NvOr152PSE ; Align 2537 190 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr155INT Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 180 Query range: 128 -> 214 Target range: 4978 -> 5236 129 : IleSerIleAsnIleIleLeuValGlyTyrIleThrLeuProLeuAlaProMetLeuLeuAs : 149 :!: !|||::::!! ! !!.! !!:!!!: !||||||!!!!.! !! !:!!||||| ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAs 4979 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGA : 5039 150 : pIleIleAspProLeuAsnGluThrArgProLysAlaPheProTyrPheAlaGluTyrPheI : 170 ||||:!! |||||||||||||||||| !!::! !||| !||| ||| ! ||||||: pIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheV 5040 : CATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCG : 5102 171 : leAspAspGlnLysTyrTyrPheGluLeuThrValHisGlyTrpIleValCysIleLeuSer : 190 !!|||!!:.!.||||||:!!!:! !:!!..!! !||| !!:::!!||| :!!:!! ! alAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeu 5103 : TCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTT : 5162 191 : ValGlnIleTyrGlyThrPheAspAlaThrTyrThrGlnLeuValGlnHisSerCysAlaLe : 211 :!!...:!!!:! !!.!!! !||||||!.!|||..! ! !|||||||||:!!|||!.!|| IleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLe 5163 : ATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATT : 5225 212 : uPheAlaIle : 214 |!!.|||||| uLeuAlaIle 5226 : GTTGGCCATT : 5236 vulgar: NvOr155INT 128 214 . LHQN01025741.1 4978 5236 + 180 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4979 5236 180 + . gene_id 1 ; sequence NvOr155INT ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4979 5236 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4979 5236 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4979 5236 180 + . alignment_id 1 ; Query NvOr155INT ; Align 4979 129 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr155INT Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 137 -> 214 Target range: 11498 -> 11729 138 : TyrIleThrLeuProLeuAlaProMetLeuLeuAspIleIleAspProLeuAsnGluThr : 157 !:!||| !:!!|||! !.!! !! |||:!!:!! ! ! !!! !||| !||| PheIleGlnValProTrpThrThrArgLeuValAsnSerTyrLysThrGlnAsnIleThr 11499 : TTCATACAAGTGCCATGGACGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACG : 11556 158 : ArgProLysAlaPheProTyrPheAlaGluTyrPheIleAspAspGlnLysTyrTyrPhe : 177 ! ! ! ! !||| ! !!.! ! ||||||:!!|||!!: !:!!||||||!:! ProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyrTyr 11557 : CCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTAT : 11616 178 : GluLeuThrValHisGlyTrpIleValCysIleLeuSerValGlnIleTyrGlyThrPhe : 197 ! :!!! !:!!|||||| ! !..! !:!::!! !||| !:!:||| !!.!!! ! TyrIleIleLeuHisGlyThrCysThrValLeuIleValValValValTyrCysAlaCys 11617 : TACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 11676 198 : AspAlaThrTyrThrGlnLeuValGlnHisSerCysAlaLeuPheAlaIle : 214 |||.!!!:!|||! ! !||||||||||||!!!|||!.!|||||||||:!: AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaVal 11677 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTG : 11729 vulgar: NvOr155INT 137 214 . LHQN01025741.1 11498 11729 + 126 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11499 11729 126 + . gene_id 2 ; sequence NvOr155INT ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11499 11729 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11499 11729 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11499 11729 126 + . alignment_id 2 ; Query NvOr155INT ; Align 11499 138 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr155INT Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 137 -> 182 Target range: 8916 -> 9051 138 : TyrIleThrLeuProLeuAlaProMetLeuLeuAspIleIleAspProLeuAsnGluThrAr : 158 !:!:!! !:!!|||!!!||||||!!::!!||||||||| !! |||||||||:!!||||| PheLeuCysValProPheAlaProIleIleLeuAspIleCysAlaProLeuAsnLysThrAr 8917 : TTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTGCGCGCCACTGAACAAAACGAG : 8977 159 : gProLysAlaPheProTyrPheAlaGluTyrPheIleAspAspGlnLysTyrTyrPheGluL : 179 | !:::|||||| !||| ||| ! |||!::!!:||| !:!!:!!||||||.!. !: gLysArgAlaPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMetIleM 8978 : AAAACGTGCGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATGATAA : 9040 180 : euThrValHis : 182 !!! !:!!||| etIleIleHis 9041 : TGATAATACAC : 9051 vulgar: NvOr155INT 137 182 . LHQN01025741.1 8916 9051 + 119 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 8917 9051 119 + . gene_id 3 ; sequence NvOr155INT ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 8917 9051 . + . LHQN01025741.1 exonerate:protein2genome:local exon 8917 9051 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 8917 9051 119 + . alignment_id 3 ; Query NvOr155INT ; Align 8917 138 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr154 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 128 -> 214 Target range: 4978 -> 5236 129 : IleProIleAsnIleIleLeuValIleTyrIleSerLeuProLeuLeuProLeuLeuLeuAs : 149 :!:! !|||::::!! ! !!.!:!!!:!!!:!!!||||||!!!:!! !!! !:!!||||| ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAs 4979 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGA : 5039 150 : pValIleAspProGlnAsnGluThrArgProLysGlnPheProTyrPheAlaGluTyrPheI : 170 |:!!:!! ||| !|||||||||||| !!::! !||| !||| ||| ! ||||||: pIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheV 5040 : CATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCG : 5102 171 : leAspAspGlnLysTyrTyrPheGluLeuThrIleHisGlyTrpIleValCysIleLeuSer : 190 !!|||!!:.!.||||||:!!!:! !:!!..! ||| !!:::!!||| :!!:!! ! alAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeu 5103 : TCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTT : 5162 191 : ValGlnIleTyrGlyThrPheAspThrThrTyrThrGlnCysValGlnHisAlaCysGlyLe : 211 :!!...:!!!:! !!.!!! !|||.!!!.!|||..! ! ..!|||||||||||||||||||| IleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLe 5163 : ATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATT : 5225 212 : uPheGlyIle : 214 |!!.!.!||| uLeuAlaIle 5226 : GTTGGCCATT : 5236 vulgar: NvOr154 128 214 . LHQN01025741.1 4978 5236 + 178 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4979 5236 178 + . gene_id 1 ; sequence NvOr154 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4979 5236 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4979 5236 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4979 5236 178 + . alignment_id 1 ; Query NvOr154 ; Align 4979 129 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr154 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 135 -> 214 Target range: 1588 -> 1825 136 : ValIleTyrIleSerLeuProLeuLeuProLeuLeuLeuAspValIleAspProGlnAsnGl : 156 ||||||!:!! !|||:!! !!:!! !|||! !:!!||||||:!!|||...|||:!!||||| ValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGl 1589 : GTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGA : 1649 157 : uThrArgProLysGlnPheProTyrPheAlaGluTyrPheIleAspAspGlnLysTyrTyrP : 177 |:!!||| ! .!.||| !||| !||| ! ||| !:!!|||!!::!!:!!:!!|||! uSerArgGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrT 1650 : ATCGCGTGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAGGAACATTATT : 1712 178 : heGluLeuThrIleHisGlyTrpIleValCysIleLeuSerValGlnIleTyrGlyThrPhe : 197 :! |||! ! !||| ! !||| ! !:!! ! !! :!!||| !:!!! ! yrIleLeuMetGlyHisMetLeuCysValIleThrValValPhePheValTyrIleSerCys 1713 : ACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTCTACATCTCCTGT : 1772 198 : AspThrThrTyrThrGlnCysValGlnHisAlaCysGlyLeuPheGlyIle : 214 ||||||! !|||! !.!. !|||||||||||||||||||||.!...!:!! AspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnVal 1773 : GACACGATCTACATGAATATCGTGCAACACGCGTGCGGATTACTGAACGTC : 1825 vulgar: NvOr154 135 214 . LHQN01025741.1 1588 1825 + 152 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1589 1825 152 + . gene_id 2 ; sequence NvOr154 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1589 1825 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1589 1825 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1589 1825 152 + . alignment_id 2 ; Query NvOr154 ; Align 1589 136 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr154 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 132 -> 214 Target range: 11483 -> 11729 133 : IleIleLeuValIleTyrIleSerLeuProLeuLeuProLeuLeuLeuAspValIleAsp : 152 ||| !! ! !!:!:!:!|||..!:!!|||! ! ! !!! !|||:!!:!! ! ! ! IleCysSerPheLeuPheIleGlnValProTrpThrThrArgLeuValAsnSerTyrLys 11484 : ATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGATTGGTGAACTCGTACAAG : 11541 153 : ProGlnAsnGluThrArgProLysGlnPheProTyrPheAlaGluTyrPheIleAspAsp : 172 !!|||||| !|||! ! ! !|||||| ! !!.! ! ||||||:!!|||!!: ThrGlnAsnIleThrProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGlu 11542 : ACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAA : 11601 173 : GlnLysTyrTyrPheGluLeuThrIleHisGlyTrpIleValCysIleLeuSerValGln : 192 !:!!||||||!:! ! :!!! !:!!|||||| ! !..! !:!::!! !||| ! ValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeuIleValValVal 11602 : GTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTG : 11661 193 : IleTyrGlyThrPheAspThrThrTyrThrGlnCysValGlnHisAlaCysGlyLeuPhe : 212 :!:||| !!.!!! !||||||!:!|||! ! ! |||||||||.!!|||||||||||| ValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPhe 11662 : GTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTC : 11721 213 : GlyIle : 214 !.!:!: AlaVal 11722 : GCCGTG : 11729 vulgar: NvOr154 132 214 . LHQN01025741.1 11483 11729 + 142 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11484 11729 142 + . gene_id 3 ; sequence NvOr154 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11484 11729 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11484 11729 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11484 11729 142 + . alignment_id 3 ; Query NvOr154 ; Align 11484 133 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr149 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 134 -> 220 Target range: 4978 -> 5236 135 : ValTyrCysAlaValAlaGlyPheAlaPheCysGlnMetThrAlaLeuProAlaLeuMetAs : 155 |||:!! :!!:!!..!!.! ! !||| :!! !! !:!! !! !!:!!:!!|| ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAs 4979 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGA : 5039 156 : pIleIleLeuProLeuAsnGluSerArgProLysIleLeuValThrLysAlaGluTyrProP : 176 ||||:!!:!!||||||||||||!!!||| !!::!:!:!!!||| ! !||| ! ||| ! pIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheV 5040 : CATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCG : 5102 177 : heAspProPheGluTyrTyrTyrGluLeuTyrPheLeuTyrCysThrAlaAlaValValSer : 196 !!||| ! !:!!|||:!!||| !:!! ! ! ! ! !!.!!.!|||:!! ! alAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeu 5103 : TCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTT : 5162 197 : ValSerValLeuAlaSerThrAspSerThrTyrSerValIleIleHisGlnSerLeuGlyIl : 217 :!!||||||!!!..!:!! !|||:!!!.!||| ! ! !:!:!!.!!.:!!! !|||:! IleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLe 5163 : ATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATT : 5225 218 : ePheGlyIle : 220 :!!.!.!||| uLeuAlaIle 5226 : GTTGGCCATT : 5236 vulgar: NvOr149 134 220 . LHQN01025741.1 4978 5236 + 104 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4979 5236 104 + . gene_id 1 ; sequence NvOr149 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4979 5236 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4979 5236 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4979 5236 104 + . alignment_id 1 ; Query NvOr149 ; Align 4979 135 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr157 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 137 -> 214 Target range: 1224 -> 993 138 : TyrLeuLeuValProPheThrProMetLeuLeuAspLeuIleAspProLeuAsnGluThrAr : 158 !:!:!!! !||||||!::||| !! :!!:!!:!!! ! ! ! !!! !||| !|||! PheIleGlnValProTrpThrThrArgMetValAsnSerTyrLysThrGlnAsnIleThrPr 1224 : TTCATACAAGTGCCATGGACGACCCGAATGGTGAACTCGTACAAGACACAGAATATAACGCC : 1164 159 : gProLysAlaPheProTyrPheAlaGluTyrPheIleAspAsnGlnLysTyrTyrPheGluL : 179 ! ! ! !! !! ! !!.! ! ||||||:!!|||.!. !:!!||||||!:! ! : oSerLeuProValValValProGlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrI 1163 : AAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTATTACA : 1101 180 : euThrValHisGlyTrpIleIleCysIleLeuSerValGlnIleTyrGlyThrPheAspAla : 199 !!! !:!!|||||| ! !! ! !:!::!! !||| !:!:||| !!.!!! !|||.!! leIleLeuHisGlyThrCysThrValLeuIleValValValValTyrCysAlaCysAspThr 1100 : TCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACC : 1041 200 : ThrTyrThrGlnLeuValGlnHisSerCysAlaLeuPheAlaIle : 214 !:!|||! ! !||||||||||||!!!|||!.!|||||||||:!: SerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaVal 1040 : AGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTG : 994 vulgar: NvOr157 137 214 . LHQN01027734.1 1224 993 - 122 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 994 1224 122 - . gene_id 1 ; sequence NvOr157 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 994 1224 . - . LHQN01027734.1 exonerate:protein2genome:local exon 994 1224 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 994 1224 122 - . alignment_id 1 ; Query NvOr157 ; Align 1225 138 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr155INT Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 167 -> 214 Target range: 1134 -> 993 168 : TyrPheIleAspAspGlnLysTyrTyrPheGluLeuThrValHisGlyTrpIleValCysIl : 188 ||||||:!!|||!!: !:!!||||||!:! ! :!!! !:!!|||||| ! !..! !:! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLe 1134 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTT : 1074 189 : eLeuSerValGlnIleTyrGlyThrPheAspAlaThrTyrThrGlnLeuValGlnHisSerC : 209 ::!! !||| !:!:||| !!.!!! !|||.!!!:!|||! ! !||||||||||||!!!| uIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrC 1073 : GATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTT : 1011 210 : ysAlaLeuPheAlaIle : 214 ||!.!|||||||||:!: ysGlyLeuPheAlaVal 1010 : GCGGACTGTTCGCCGTG : 994 vulgar: NvOr155INT 167 214 . LHQN01027734.1 1134 993 - 118 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 994 1134 118 - . gene_id 1 ; sequence NvOr155INT ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 994 1134 . - . LHQN01027734.1 exonerate:protein2genome:local exon 994 1134 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 994 1134 118 - . alignment_id 1 ; Query NvOr155INT ; Align 1135 168 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr154 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 132 -> 214 Target range: 1239 -> 993 133 : IleIleLeuValIleTyrIleSerLeuProLeuLeuProLeuLeuLeuAspValIleAspPr : 153 ||| !! ! !!:!:!:!|||..!:!!|||! ! ! !!! !:!!:!!:!! ! ! ! ! IleCysSerPheLeuPheIleGlnValProTrpThrThrArgMetValAsnSerTyrLysTh 1239 : ATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGAATGGTGAACTCGTACAAGAC : 1179 154 : oGlnAsnGluThrArgProLysGlnPheProTyrPheAlaGluTyrPheIleAspAspGlnL : 174 !|||||| !|||! ! ! !! ! !! ! !!.! ! ||||||:!!|||!!: !: rGlnAsnIleThrProSerLeuProValValValProGlyTyrTyrPheValAspGluValG 1178 : ACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAG : 1116 175 : ysTyrTyrPheGluLeuThrIleHisGlyTrpIleValCysIleLeuSerValGlnIleTyr : 194 !!||||||!:! ! :!!! !:!!|||||| ! !..! !:!::!! !||| !:!:||| luTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeuIleValValValValTyr 1115 : AATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTAC : 1056 195 : GlyThrPheAspThrThrTyrThrGlnCysValGlnHisAlaCysGlyLeuPheGlyIle : 214 !!.!!! !||||||!:!|||! ! ! |||||||||.!!||||||||||||!.!:!: CysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaVal 1055 : TGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTG : 994 vulgar: NvOr154 132 214 . LHQN01027734.1 1239 993 - 127 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 994 1239 127 - . gene_id 1 ; sequence NvOr154 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 994 1239 . - . LHQN01027734.1 exonerate:protein2genome:local exon 994 1239 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 994 1239 127 - . alignment_id 1 ; Query NvOr154 ; Align 1240 133 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr159 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 174 -> 221 Target range: 1134 -> 993 175 : TyrPheIleAspAspGluAlaTyrTyrTyrGlnLeuMetGlyHisGlyThrIleValPheTh : 195 ||||||:!!|||!!:! !! !||||||||| ! :!!!!: !||||||||| !..! !! TyrPheValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLe 1134 : TACTTCGTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTT : 1074 196 : rValSerValMetValTyrValSerIleAspThrMetTyrAlaCysCysAlaGlnHisLeuC : 216 !:!! !|||:!!|||||| !:!! !||||||! ||| ! !.!|||||| !| uIleValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrC 1073 : GATTGTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTT : 1011 217 : ysGlyLeuPheSerIle : 221 |||||||||||:!!:!: ysGlyLeuPheAlaVal 1010 : GCGGACTGTTCGCCGTG : 994 vulgar: NvOr159 174 221 . LHQN01027734.1 1134 993 - 127 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 994 1134 127 - . gene_id 1 ; sequence NvOr159 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 994 1134 . - . LHQN01027734.1 exonerate:protein2genome:local exon 994 1134 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 994 1134 127 - . alignment_id 1 ; Query NvOr159 ; Align 1135 175 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr147 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 138 -> 224 Target range: 5684 -> 5426 139 : ValTyrMetAlaAlaAlaGlyValGlyPheCysGlnIleProMetIleProValPheLeuAs : 159 |||:!!!!::!! !..!!.!!.! !||| :!:|||.!.:!: !! !.!!||||| ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAs 5684 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGA : 5624 160 : pPheIleAsnProLeuAsnGluThrArgProLysIleLeuPheValLysAlaGluPheIleP : 180 |.!!:!!! |||||||||||||||||| !!::!:!:!!! !! ! !||| ! !:!.!! pIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheV 5623 : CATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCG : 5561 181 : heAspProTyrLysTyrPheTyrGlnLeuTyrAlaPhePheIleGlyCysAlaAlaSerAla : 200 !!||| ! !!|||||| !||| !:!! !.! !.!. ! ! !.!!.!! ! ! alAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeu 5560 : TCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTT : 5501 201 : ValPheIleValCysSerIleAspThrThrPheThrAlaValValHisGlnIleIleGlyVa : 221 :!!! !:!! !!|||:!! !|||.!!!.!!:!..! !!.!|||!!.!!. ! !|||:! IleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLe 5500 : ATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATT : 5438 222 : lValSerIle : 224 !:!!:!!||| uLeuAlaIle 5437 : GTTGGCCATT : 5427 vulgar: NvOr147 138 224 . LHQN01028732.1 5684 5426 - 102 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5427 5684 102 - . gene_id 1 ; sequence NvOr147 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5427 5684 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5427 5684 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5427 5684 102 - . alignment_id 1 ; Query NvOr147 ; Align 5685 139 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr159 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 163 Query range: 141 -> 221 Target range: 5663 -> 5426 142 : ValValTyrSerThrMetProAlaIleAlaProAlaValLeuAspIleValIleProLeuAs : 162 !.!:!!!:!! ! !:!!||| !:!::!!||| :!!|||||||||:!!!!:|||||||| AlaLeuPheMetCysLeuProPheValSerPro---IleLeuAspIleLeuMetProLeuAs 5663 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCG---ATTCTGGACATCCTTATGCCGTTGAA : 5606 163 : nGluSerArgLysLysThrPheProTyrTyrAlaGluTyrPheIleAspAspGluAlaTyrT : 183 ||||!!!||| !::! !||| !||| ||| ! ||||||:!!|||!!:!!: !||| nGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrA 5605 : CGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATC : 5543 184 : yrTyrGlnLeuMetGlyHisGlyThrIleValPheThrValSerValMetValTyrValSer : 203 !||| !:!!:!:|||||| ! !:!!||| ! ..!:!! !:!! |||!:! !:!! rgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 5542 : GTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 5483 204 : IleAspThrMetTyrAlaCysCysAlaGlnHisLeuCysGlyLeuPheSerIle : 221 !|||.!!! |||!.!! !..!!.!|||||| !|||||||||!!.:!!||| CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 5482 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 5427 vulgar: NvOr159 141 221 . LHQN01028732.1 5663 5426 - 163 M 11 33 G 1 0 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5427 5663 163 - . gene_id 1 ; sequence NvOr159 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5427 5663 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5427 5663 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5427 5663 163 - . alignment_id 1 ; Query NvOr159 ; Align 5664 142 33 ; Align 5631 154 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr154 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 174 Query range: 128 -> 214 Target range: 5684 -> 5426 129 : IleProIleAsnIleIleLeuValIleTyrIleSerLeuProLeuLeuProLeuLeuLeuAs : 149 :!:! !|||::::!! ! !!.!:!!!:!!!:!!!||||||!!!:!! !!! !:!!||||| ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAs 5684 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGA : 5624 150 : pValIleAspProGlnAsnGluThrArgProLysGlnPheProTyrPheAlaGluTyrPheI : 170 |:!!:!! ||| !|||||||||||| !!::! !||| !||| ||| ! ||||||: pIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheV 5623 : CATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCG : 5561 171 : leAspAspGlnLysTyrTyrPheGluLeuThrIleHisGlyTrpIleValCysIleLeuSer : 190 !!|||!!:.!.|||||| !!:! !:!!..! ||| !!:::!!||| :!!:!! ! alAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeu 5560 : TCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTT : 5501 191 : ValGlnIleTyrGlyThrPheAspThrThrTyrThrGlnCysValGlnHisAlaCysGlyLe : 211 :!!...:!!!:! !!.!!! !|||.!!!.!|||..! ! ..!|||||||||||||||||||| IleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLe 5500 : ATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATT : 5438 212 : uPheGlyIle : 214 |!!.!.!||| uLeuAlaIle 5437 : GTTGGCCATT : 5427 vulgar: NvOr154 128 214 . LHQN01028732.1 5684 5426 - 174 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5427 5684 174 - . gene_id 1 ; sequence NvOr154 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5427 5684 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5427 5684 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5427 5684 174 - . alignment_id 1 ; Query NvOr154 ; Align 5685 129 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr155INT Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 176 Query range: 128 -> 214 Target range: 5684 -> 5426 129 : IleSerIleAsnIleIleLeuValGlyTyrIleThrLeuProLeuAlaProMetLeuLeuAs : 149 :!: !|||::::!! ! !!.! !!:!!!: !||||||!!!!.! !! !:!!||||| ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAs 5684 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGA : 5624 150 : pIleIleAspProLeuAsnGluThrArgProLysAlaPheProTyrPheAlaGluTyrPheI : 170 ||||:!! |||||||||||||||||| !!::! !||| !||| ||| ! ||||||: pIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheV 5623 : CATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCG : 5561 171 : leAspAspGlnLysTyrTyrPheGluLeuThrValHisGlyTrpIleValCysIleLeuSer : 190 !!|||!!:.!.|||||| !!:! !:!!..!! !||| !!:::!!||| :!!:!! ! alAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeu 5560 : TCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTT : 5501 191 : ValGlnIleTyrGlyThrPheAspAlaThrTyrThrGlnLeuValGlnHisSerCysAlaLe : 211 :!!...:!!!:! !!.!!! !||||||!.!|||..! ! !|||||||||:!!|||!.!|| IleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLe 5500 : ATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATT : 5438 212 : uPheAlaIle : 214 |!!.|||||| uLeuAlaIle 5437 : GTTGGCCATT : 5427 vulgar: NvOr155INT 128 214 . LHQN01028732.1 5684 5426 - 176 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5427 5684 176 - . gene_id 1 ; sequence NvOr155INT ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5427 5684 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5427 5684 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5427 5684 176 - . alignment_id 1 ; Query NvOr155INT ; Align 5685 129 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr155INT Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 137 -> 182 Target range: 1857 -> 1722 138 : TyrIleThrLeuProLeuAlaProMetLeuLeuAspIleIleAspProLeuAsnGluThrAr : 158 !:!:!! !:!!|||!!!||||||!!::!!||||||||| !! |||||||||:!!||||| PheLeuCysValProPheAlaProIleIleLeuAspIleCysAlaProLeuAsnLysThrAr 1857 : TTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTGCGCGCCACTGAACAAAACGAG : 1797 159 : gProLysAlaPheProTyrPheAlaGluTyrPheIleAspAspGlnLysTyrTyrPheGluL : 179 | !:::!.!||| !||| ||| ! |||!::!!:||| !:!!:!!||||||.!. !: gLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMetIleM 1796 : AAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATGATAA : 1734 180 : euThrValHis : 182 !!! !:!!||| etIleIleHis 1733 : TGATAATACAC : 1723 vulgar: NvOr155INT 137 182 . LHQN01028732.1 1857 1722 - 115 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1723 1857 115 - . gene_id 2 ; sequence NvOr155INT ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 1723 1857 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1723 1857 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1723 1857 115 - . alignment_id 2 ; Query NvOr155INT ; Align 1858 138 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr158 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 148 -> 220 Target range: 5642 -> 5426 149 : IleValProAsnValLeuAspValValIleProLeuAsnGluSerArgAlaLysThrPhePr : 169 .!!||| !! :!!||||||:!!:!!!!:||||||||||||!!!||||||::! !||| PheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheVa 5642 : TTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGT : 5582 170 : oTyrPheIleGluTyrPheIleAspThrGluValTyrTyrTyrGlnLeuMetAlaHisGlyT : 190 !||| ! ! ||||||:!!||| !!!: !||| !||| !:!!:!:!.!||| ! lTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuIleValGlyHisMetT 5581 : CTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGT : 5519 191 : hrLeuCysPheThrIleSerAlaLeuValTyrValSerIleAspThrMetTyrAlaThrCys : 210 !||| ! ..!!!: ! !! !|||!:! !:!! !|||.!!! |||!.! !..! yrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAla 5518 : ATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCC : 5459 211 : SerGlnHisLeuCysSerLeuPheAspVal : 220 !|||||| !|||.!!|||!!.! !:!! ValGlnHisAlaCysGlyLeuLeuAlaIle 5458 : GTGCAACACGCTTGCGGATTGTTGGCCATT : 5427 vulgar: NvOr158 148 220 . LHQN01028732.1 5642 5426 - 130 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5427 5642 130 - . gene_id 1 ; sequence NvOr158 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5427 5642 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5427 5642 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5427 5642 130 - . alignment_id 1 ; Query NvOr158 ; Align 5643 149 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr151 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 320 -> 376 Target range: 7797 -> 7629 321 : IleAspHisSerLysGluLeuTyrLeuAsnValTyrSerAsnGluTrpTyrAsnLeuThrLy : 341 :!!.!.:!! !:!!:!!||| !:!!..! !|||||| ! !||||||||| !||| LeuGlnAsnValGlnLysLeuLeuValArgArgTyrSerAlaThrTrpTyrAsnGlyThrPr 7797 : CTTCAAAACGTTCAGAAGTTGCTCGTTCGCAGATACAGCGCTACATGGTACAACGGTACACC : 7737 342 : sGluAlaLysThrLeuLeuLysIleValMetLeuArgCysLeuLysProSerLysPheThrA : 362 !:!!!.!:!!.!!|||! ! !:!!!.!:!! !||| !|||! ||| !! !.!!|||| oLysValGlnAlaLeuTyrValLeuAlaLeuArgArgAsnLeuThrProProLeuIleThrA 7736 : GAAAGTGCAAGCTTTATACGTGCTAGCTTTGAGAAGGAACTTGACTCCACCGCTGATTACTG : 7674 363 : laGlyGlyLeuTyrThrLeuAsnLeuGluSerPheGlyThrIle : 376 ||||||||||| !:!!||||||||||||!!!|||!.! !:!! laGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGluVal 7673 : CCGGAGGACTGATCTCCTTGAATTTGGAGACTTTCGCGGAGGTA : 7630 vulgar: NvOr151 320 376 . LHQN01028732.1 7797 7629 - 103 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 7630 7797 103 - . gene_id 1 ; sequence NvOr151 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 7630 7797 . - . LHQN01028732.1 exonerate:protein2genome:local exon 7630 7797 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 7630 7797 103 - . alignment_id 1 ; Query NvOr151 ; Align 7798 321 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr152PSE Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 8 -> 85 Target range: 5657 -> 5426 9 : PheCysGlnIleProMetIleProIleValLeuAspLeuIleMetProLeuAsnGluSerAr : 29 ||| :!:|||.!.:!: !! :!!||||||:!!:!!|||||||||||||||!!!|| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5657 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5597 30 : gProLysIleLeuPheValLysGlyGluTyrIleIleAspProPheLysHisPheTyrLysL : 50 | !!::!:!:!!! !! ! !!.! ! |||.!!:!!||| ! !|||:!! !||| !: gAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuI 5596 : AGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGA : 5534 51 : euTyrValTyrPheAlaIleThrSerLeuThrThrValThrValValSerAlaIleAspThr : 70 !! ! !:!!.!. !:!!..! !:!!! ! !:!!:!!||| !!!!!||| !|||.!! leValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 5533 : TCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 5474 71 : ThrTyrThrAlaCysValHisGlnIleLeuAlaIlePheSerIle : 85 !.!|||..! !..!|||!!.!!. !! !!.!:!:!!.:!!||| AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 5473 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 5427 vulgar: NvOr152PSE 8 85 . LHQN01028732.1 5657 5426 - 105 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5427 5657 105 - . gene_id 1 ; sequence NvOr152PSE ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5427 5657 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5427 5657 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5427 5657 105 - . alignment_id 1 ; Query NvOr152PSE ; Align 5658 9 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr162 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 160 Query range: 137 -> 228 Target range: 5696 -> 5426 138 : ThrPheTyrArgValMetAlaValPheAlaLeuSerSerTyrAlaCysLeuProSerPheGl : 158 |||||| ! !:!||| ! !!!...! !:!! !!:! !|||||||||! ! ! .. ThrPheGluLysValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSe 5696 : ACGTTTGAAAAAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTC : 5636 159 : yProValIleMetAsnIleLeuLeuProLeuAsnGluThrArgGlnLysArgIleProAlaP : 179 !||| |||:!!:!!||||||:!!|||||||||||||||||| !::! !.!! ! !| rPro---IleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrP 5635 : GCCG---ATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATC : 5576 180 : roAlaGluTyrPheValAspGluGluLysTyrPheTyrIleLeuPheSerHisGlyMetIle : 199 ||||| ! |||||||||||||||!!:|||||| !|||:!::!! ! .!!||| ! :!! roAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeu 5575 : CAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTT : 5516 200 : LeuTyrMetLeuValCysValLeuTyrValThrIleAspSerMetTyrSerCysIleValHi : 220 :!! :!::!!:!! ! !:!!!:! !.!! !|||:!!! ||| !! ! !|||!! ValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGl 5515 : GTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCA : 5453 221 : sHisThrValGlyLeuValGlyIle : 228 .|||.!! !||||||:!!!.!||| nHisAlaCysGlyLeuLeuAlaIle 5452 : ACACGCTTGCGGATTGTTGGCCATT : 5427 vulgar: NvOr162 137 228 . LHQN01028732.1 5696 5426 - 160 M 22 66 G 1 0 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5427 5696 160 - . gene_id 1 ; sequence NvOr162 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5427 5696 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5427 5696 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5427 5696 160 - . alignment_id 1 ; Query NvOr162 ; Align 5697 138 66 ; Align 5631 161 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr162 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 147 Query range: 108 -> 196 Target range: 2043 -> 1722 109 : GlnIleAlaLysGlnTrpAlaSerIleThrAspGluThrGluCysLysIleLeuAlaAspAs : 129 |||||| ! ! .!.|||.!!|||||||||..!||||||||||||||||||:!!!.! ! ! GlnIlePheAspAspTrpThrSerIleThrSerGluThrGluCysLysIleMetValThrTy 2043 : CAGATATTCGACGACTGGACGTCGATCACATCTGAGACGGAATGCAAGATCATGGTGACCTA : 1983 130 : nValLysLeuCysHisProLeuCysThrPheTyrArg{V} >>>> Target Intron 1 : 142 !!.!::! ! ! !!.! !:!!... !! !||| !{!} 60 bp rAlaArgLysGlyGlnLeuIleAlaLeuCysTyrAla{A}++ 1982 : TGCTCGAAAAGGACAACTGATCGCGTTGTGTTACGCA{G}gt.................... : 1941 143 : >>>> {al}MetAlaValPheAlaLeuSerSerTyrAlaCysLeuProSerPheGlyPro : 159 {.!} ! !!.!! !! !:!!! !!:! !|||:!!||| |||!.!||| ++{la}HisLeuPheLeuProAlaAlaIlePheLeuCysValPro---PheAlaPro 1940 : .....ag{CG}CATTTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCT---TTCGCACCG : 1836 160 : ValIleMetAsnIleLeuLeuProLeuAsnGluThrArgGlnLysArgIleProAlaProAl : 180 :!!|||:!!:!!|||! ! !|||||||||:!!||||||:!!::: !.!! ! !||||| IleIleLeuAspIleCysAlaProLeuAsnLysThrArgLysArgValPheValTyrProAl 1835 : ATCATCTTGGACATTTGCGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCAGC : 1773 181 : aGluTyrPheValAspGluGluLysTyrPheTyrIleLeuPheSerHis : 196 | ! |||!:::!!||| |||:!!|||!:! |||:!!.!.! !||| aTyrTyrTrpMetAspProGluGlnTyrTyrMetIleMetIleIleHis 1772 : CTATTACTGGATGGATCCTGAGCAATACTACATGATAATGATAATACAC : 1723 vulgar: NvOr162 108 196 . LHQN01028732.1 2043 1722 - 147 M 33 99 S 0 1 5 0 2 I 0 56 3 0 2 S 1 2 M 13 39 G 1 0 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1723 2043 147 - . gene_id 2 ; sequence NvOr162 ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 1944 2043 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1944 2043 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 1942 1943 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 1884 1943 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 1884 1885 . - . intron_id 0 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 1723 1883 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1723 1883 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 1723 2043 147 - . alignment_id 2 ; Query NvOr162 ; Align 2044 109 99 ; Align 1882 143 39 ; Align 1843 157 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr149 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 134 -> 220 Target range: 5684 -> 5426 135 : ValTyrCysAlaValAlaGlyPheAlaPheCysGlnMetThrAlaLeuProAlaLeuMetAs : 155 |||:!! :!!:!!..!!.! ! !||| :!! !! !:!! !! !!:!!:!!|| ValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAs 5684 : GTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGA : 5624 156 : pIleIleLeuProLeuAsnGluSerArgProLysIleLeuValThrLysAlaGluTyrProP : 176 ||||:!!:!!||||||||||||!!!||| !!::!:!:!!!||| ! !||| ! ||| ! pIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheV 5623 : CATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCG : 5561 177 : heAspProPheGluTyrTyrTyrGluLeuTyrPheLeuTyrCysThrAlaAlaValValSer : 196 !!||| ! !:!!||| !||| !:!! ! ! ! ! !!.!!.!|||:!! ! alAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeu 5560 : TCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTT : 5501 197 : ValSerValLeuAlaSerThrAspSerThrTyrSerValIleIleHisGlnSerLeuGlyIl : 217 :!!||||||!!!..!:!! !|||:!!!.!||| ! ! !:!:!!.!!.:!!! !|||:! IleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLe 5500 : ATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATT : 5438 218 : ePheGlyIle : 220 :!!.!.!||| uLeuAlaIle 5437 : GTTGGCCATT : 5427 vulgar: NvOr149 134 220 . LHQN01028732.1 5684 5426 - 100 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5427 5684 100 - . gene_id 1 ; sequence NvOr149 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5427 5684 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5427 5684 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5427 5684 100 - . alignment_id 1 ; Query NvOr149 ; Align 5685 135 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr156 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 149 -> 221 Target range: 5642 -> 5426 150 : LeuValProIleIleLeuAspIleAlaLeuProLeuAsnGluSerArgArgLysThrPhePr : 170 !!!||| !! |||||||||||| !:!!||||||||||||!!!||| !::! !||| PheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheVa 5642 : TTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGT : 5582 171 : oTyrPheIleGluTyrPheIleAspThrGluPheTyrTyrTyrGlnLeuMetValHisGlyT : 191 !||| ! ! ||||||:!!||| !!!: ||| !||| !:!!:!:! !||| ! lTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuIleValGlyHisMetT 5581 : CTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGT : 5519 192 : hrIleCysPheThrIleSerValLeuValTyrIleSerIleAspThrMetTyrAlaAlaCys : 211 !:!! ! ..!!!: !:!!! !|||!:! !:!! !|||.!!! |||!.! !..! yrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAla 5518 : ATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCC : 5459 212 : CysGlnHisLeuCysGlyLeuPheAspIle : 221 |||||| !|||||||||!!.! !||| ValGlnHisAlaCysGlyLeuLeuAlaIle 5458 : GTGCAACACGCTTGCGGATTGTTGGCCATT : 5427 vulgar: NvOr156 149 221 . LHQN01028732.1 5642 5426 - 131 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5427 5642 131 - . gene_id 1 ; sequence NvOr156 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5427 5642 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5427 5642 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5427 5642 131 - . alignment_id 1 ; Query NvOr156 ; Align 5643 150 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr156 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 149 -> 189 Target range: 1842 -> 1722 150 : LeuValProIleIleLeuAspIleAlaLeuProLeuAsnGluSerArgArgLysThrPhePr : 170 !!!!.!||||||||||||||||||..! !|||||||||:!!!!!|||!:!:::..!||| PheAlaProIleIleLeuAspIleCysAlaProLeuAsnLysThrArgLysArgValPheVa 1842 : TTCGCACCGATCATCTTGGACATTTGCGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGT : 1782 171 : oTyrPheIleGluTyrPheIleAspThrGluPheTyrTyrTyrGlnLeuMetValHis : 189 !||| ! ! |||!::!!:||| !!||| |||||| !:!!!!::!!||| lTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMetIleMetIleIleHis 1781 : TTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATGATAATGATAATACAC : 1723 vulgar: NvOr156 149 189 . LHQN01028732.1 1842 1722 - 100 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1723 1842 100 - . gene_id 2 ; sequence NvOr156 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 1723 1842 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1723 1842 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1723 1842 100 - . alignment_id 2 ; Query NvOr156 ; Align 1843 150 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr157 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 172 Query range: 137 -> 214 Target range: 5657 -> 5426 138 : TyrLeuLeuValProPheThrProMetLeuLeuAspLeuIleAspProLeuAsnGluThrAr : 158 !:!:!!! !:!!||||||..! !! !:!!||||||:!!:!! ||||||||||||||||| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5657 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5597 159 : gProLysAlaPheProTyrPheAlaGluTyrPheIleAspAsnGlnLysTyrTyrPheGluL : 179 | !!::! !||| !||| ||| ! ||||||:!!|||.!..!.|||||| !!:! !: gAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuI 5596 : AGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGA : 5534 180 : euThrValHisGlyTrpIleIleCysIleLeuSerValGlnIleTyrGlyThrPheAspAla : 199 !!..!! !||| !!:::!!:!! :!!:!! !:!!...:!!!:! !!.!!! !|||||| leValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 5533 : TCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 5474 200 : ThrTyrThrGlnLeuValGlnHisSerCysAlaLeuPheAlaIle : 214 !.!|||..! ! !|||||||||:!!|||!.!|||!!.|||||| AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 5473 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 5427 vulgar: NvOr157 137 214 . LHQN01028732.1 5657 5426 - 172 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5427 5657 172 - . gene_id 1 ; sequence NvOr157 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5427 5657 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5427 5657 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5427 5657 172 - . alignment_id 1 ; Query NvOr157 ; Align 5658 138 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr157 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 137 -> 182 Target range: 1857 -> 1722 138 : TyrLeuLeuValProPheThrProMetLeuLeuAspLeuIleAspProLeuAsnGluThrAr : 158 !:!|||! !|||||||||.!!|||!!::!!||||||:!! !! |||||||||:!!||||| PheLeuCysValProPheAlaProIleIleLeuAspIleCysAlaProLeuAsnLysThrAr 1857 : TTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTGCGCGCCACTGAACAAAACGAG : 1797 159 : gProLysAlaPheProTyrPheAlaGluTyrPheIleAspAsnGlnLysTyrTyrPheGluL : 179 | !:::!.!||| !||| ||| ! |||!::!!:||| !:!!:!!||||||.!. !: gLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMetIleM 1796 : AAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATGATAA : 1734 180 : euThrValHis : 182 !!! !:!!||| etIleIleHis 1733 : TGATAATACAC : 1723 vulgar: NvOr157 137 182 . LHQN01028732.1 1857 1722 - 119 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1723 1857 119 - . gene_id 2 ; sequence NvOr157 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 1723 1857 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1723 1857 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1723 1857 119 - . alignment_id 2 ; Query NvOr157 ; Align 1858 138 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr147 Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 329 -> 380 Target range: 601 -> 448 330 : AspLeuPheAlaAlaIleTyrAlaThrGluTrpTyrAsnValSerGluArgSerLysLysLeuL : 351 !!::!!! !! !.!!:!!!:!! !!:!.!.||| :!!|||:!!!!!!!!|||||| !| GluIleCysAspThrValPheGluSerAsnTrpThrAlaLeuSerGlnSerThrLysLysThrL 601 : GAAATTTGCGACACAGTATTCGAAAGCAACTGGACGGCACTGAGCCAGAGCACCAAAAAGACAC : 538 352 : euSerIleIleMetLeuArgSerLeuLysProCysValPheThrAlaGlyGlyLeuTyrValMe : 372 || !! |||||||||||||||||||||||| ! !||||||!.!!.! !:!!!:! !:! euLeuThrIleMetLeuArgSerLeuLysProIleGluPheThrGlyAlaPheValPheProVa 537 : TCCTGACGATTATGTTACGCTCGTTGAAGCCAATAGAATTCACCGGCGCTTTCGTTTTTCCCGT : 475 373 : tAsnLeuGluAsnPheGlySerIle : 380 :|||||||||::!||| !|||:!! lAsnLeuGluSerPheLysSerVal 474 : AAATTTGGAGTCTTTTAAAAGTGTT : 449 vulgar: NvOr147 329 380 . LHQN01050085.1 601 448 - 103 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 449 601 103 - . gene_id 1 ; sequence NvOr147 ; gene_orientation . LHQN01050085.1 exonerate:protein2genome:local cds 449 601 . - . LHQN01050085.1 exonerate:protein2genome:local exon 449 601 . - . insertions 0 ; deletions 0 LHQN01050085.1 exonerate:protein2genome:local similarity 449 601 103 - . alignment_id 1 ; Query NvOr147 ; Align 602 330 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr162 Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 158 -> 229 Target range: 493 -> 706 159 : ProValIleMetAsnIleLeuLeuProLeuAsnGluThrArgGlnLysArgIleProAlaProA : 180 ||| !|||:!:..!|||:!!! !||||||!.!|||! !!.! !!.!:!:!!! !!.!! !. ProGlnIleLeuGlyIleIleSerProLeuThrGluIleAsnThrAsnLysLeuLeuValArgT 494 : CCGCAAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAACAAATTACTCGTTCGAA : 557 181 : laGluTyrPheValAspGluGluLysTyrPheTyrIleLeuPheSerHisGlyMetIleLeuTy : 201 !!||||||||||||||| ! :!! ! |||.!!|||:!!:!! ! !|||!.!! ||| ! hrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAlaThrIleAlaIl 558 : CCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCGACTATAGCAAT : 620 202 : rMetLeuValCysValLeuTyrValThrIleAspSerMetTyrSerCysIleValHisHisThr : 222 |||! ! ! ..!:!! ! :!!!:!! !|||! ::: ::: ...::! |||! ! eMetCysSerValThrMetGlnIleSerSerAspIleLeuAsnAsnIlePheMetMetHisIle 621 : AATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaataacatatttatGATGCACATC : 683 223 : ValGlyLeuValGlyIleVal : 229 !|||:!! !!! !:!!:!! SerGlyMetPheGluValIle 684 : AGTGGAATGTTCGAGGTAATT : 706 vulgar: NvOr162 158 229 . LHQN01050134.1 493 706 + 100 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 494 706 100 + . gene_id 1 ; sequence NvOr162 ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 494 706 . + . LHQN01050134.1 exonerate:protein2genome:local exon 494 706 . + . insertions 0 ; deletions 0 LHQN01050134.1 exonerate:protein2genome:local similarity 494 706 100 + . alignment_id 1 ; Query NvOr162 ; Align 494 159 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: KQ414588.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold11, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 299 -> 391 Target range: 776384 -> 776799 300 : IleMetAlaPhePheValGlyLeuIleIleHisLeuLeuTyrLeuAsnTrpValGlyG : 319 :!: .!!|||.!!:!! !! !:!::!!|||:!!|||||||||!.! !|||| LeuCysThrPheIleMetIleGlnLeuValHisValLeuTyrLeuThrLeuProGlyG 776385 : TTGTGCACATTTATCATGATTCAATTGGTACACGTACTTTATCTAACTCTTCCAGGAC : 776442 320 : lnLysIleIleAspSerSerGluAspValPheLeuAla{Al} >>>> Target In : 332 || :!:||||||:!!!:!|||!!::!!! ! !:!!{ } 61 b lnPheValIleAspAlaAsnGluGluIleSerGluSer{Il}++ 776443 : AATTCGTGATCGACGCGAACGAGGAAATCTCCGAATCG{AT}gt.............. : 776485 333 : tron 1 >>>> {a}TyrCysSerLysTrpTyrValIleSerThrSerAlaArgAla : 346 p {!}||| !!:!! !|||||| !! !..!! !!!!.!!!:!:!! ++{e}TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSer 776486 : ...........ag{A}TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCG : 776584 347 : PheIleLysIleIleMetValArgAlaLeuGluProCysArgLeuThrAlaGlyGlyL : 366 !!..!! !:!! :!: !!.!..!|||... !! !!:!:!!||||||||||||| LeuPheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyL 776585 : TTGTTTGTATTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGAC : 776644 367 : euSerThrLeuCysMetGluSerPheGlyIle >>>> Target Intron 2 >>> : 377 ||! !|||:!! !:!!:!!||||||..! 78 bp euIleThrMetAsnLeuGlnSerPheSerGlu++ 776645 : TAATTACAATGAACTTGCAAAGTTTCTCAGAGgt........................ : 776679 378 : > LeuIleLysThrSerValSerTyrPheThrValPheLeuSerVal : 391 :!!:!!||||||||||||||||||!:!! !|||.!. !|||||| ++IleValLysThrSerValSerTyrTyrMetValLeuLysSerVal 776680 : .agATTGTAAAGACGTCTGTCTCGTACTACATGGTACTGAAATCCGTA : 776799 vulgar: NvOr175 299 391 . KQ414588.1 776384 776799 + 144 M 32 96 S 0 2 5 0 2 I 0 57 3 0 2 S 1 1 M 44 132 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414588.1 exonerate:protein2genome:local gene 776385 776799 144 + . gene_id 1 ; sequence NvOr175 ; gene_orientation + KQ414588.1 exonerate:protein2genome:local cds 776385 776482 . + . KQ414588.1 exonerate:protein2genome:local exon 776385 776482 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local splice5 776483 776484 . + . intron_id 1 ; splice_site "GT" KQ414588.1 exonerate:protein2genome:local intron 776483 776543 . + . intron_id 1 KQ414588.1 exonerate:protein2genome:local splice3 776542 776543 . + . intron_id 0 ; splice_site "AG" KQ414588.1 exonerate:protein2genome:local cds 776544 776676 . + . KQ414588.1 exonerate:protein2genome:local exon 776544 776676 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local splice5 776677 776678 . + . intron_id 2 ; splice_site "GT" KQ414588.1 exonerate:protein2genome:local intron 776677 776754 . + . intron_id 2 KQ414588.1 exonerate:protein2genome:local splice3 776753 776754 . + . intron_id 1 ; splice_site "AG" KQ414588.1 exonerate:protein2genome:local cds 776755 776799 . + . KQ414588.1 exonerate:protein2genome:local exon 776755 776799 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local similarity 776385 776799 144 + . alignment_id 1 ; Query NvOr175 ; Align 776385 300 96 ; Align 776545 333 132 ; Align 776755 377 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr172PSE Target: KQ414588.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold11, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 266 -> 333 Target range: 776408 -> 776670 267 : MetIleHisLeuLeuTyrLeuSerTyrProGlyGlnLysValLeuAspTyrSerSerS : 286 :!!:!!|||:!!|||||||||!!! !||||||||| |||:!!||| !:!..!. LeuValHisValLeuTyrLeuThrLeuProGlyGlnPheValIleAspAlaAsnGluG 776409 : TTGGTACACGTACTTTATCTAACTCTTCCAGGACAATTCGTGATCGACGCGAACGAGG : 776466 287 : erIleCysGlnGlu{Se} >>>> Target Intron 1 >>>> {r}TyrThrAs : 294 .!|||! !:!!..!{! } 61 bp {!}|||!:! luIleSerGluSer{Il}++ ++{e}TyrSerAl 776467 : AAATCTCCGAATCG{AT}gt.........................ag{A}TACAGCGC : 776551 295 : nGluTrpTyrLeuIleSerLysLysSerLysIleLeuLeuLysPheMetMetLeuArg : 313 ! !|||||| !! !..!|||!:!!!!:!! |||!!! !!!. !:!: !!.! aLeuTrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeuArgAsn 776552 : TTTGTGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGTTAAGAAAT : 776608 314 : CysIleLysProSerValLeuThrAlaGlyGlyLeuTyrIleMetAsnTyrGluAsnT : 333 |||:!!... !! !! !:!!||||||||||||||| !! !||||||! :!!!:!! CysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGlnSerP 776609 : TGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAAAGTT : 776668 334 : yr : 333 :! he 776669 : TC : 776670 vulgar: NvOr172PSE 266 333 . KQ414588.1 776408 776670 + 119 M 24 72 S 0 2 5 0 2 I 0 57 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414588.1 exonerate:protein2genome:local gene 776409 776670 119 + . gene_id 1 ; sequence NvOr172PSE ; gene_orientation + KQ414588.1 exonerate:protein2genome:local cds 776409 776482 . + . KQ414588.1 exonerate:protein2genome:local exon 776409 776482 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local splice5 776483 776484 . + . intron_id 1 ; splice_site "GT" KQ414588.1 exonerate:protein2genome:local intron 776483 776543 . + . intron_id 1 KQ414588.1 exonerate:protein2genome:local splice3 776542 776543 . + . intron_id 0 ; splice_site "AG" KQ414588.1 exonerate:protein2genome:local cds 776544 776670 . + . KQ414588.1 exonerate:protein2genome:local exon 776544 776670 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local similarity 776409 776670 119 + . alignment_id 1 ; Query NvOr172PSE ; Align 776409 267 72 ; Align 776545 292 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr174PSE Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 322 -> 375 Target range: 1395323 -> 1395482 323 : SerGluLysIlePheAsnSerAlaTyrSerSerGluTrpTyrLeuIleSerThrAs : 341 ||| !..!||| !|||:!!|||||||||||| |||||||||:!:..! !!.! SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 342 : nAlaArgLysLeuThrLysValIleMetIleArgSerLeuTyrProCysHisLeuT : 360 .! !||| ! :!!! !! :!!:!!||||||||||||! ! ! !! :!!| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 361 : hrAlaGlyLysIleThrSerLeuSerMetGluThrPheGlySerLeu : 375 |||||||||||.!!! !..!||||||:!:||| !|||!.!!:!:!! hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnVal 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTA : 1395482 vulgar: NvOr174PSE 322 375 . KQ414716.1 1395323 1395482 + 105 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395482 105 + . gene_id 1 ; sequence NvOr174PSE ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395482 105 + . alignment_id 1 ; Query NvOr174PSE ; Align 1395324 323 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr174PSE Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 334 -> 388 Target range: 888484 -> 889150 335 : TrpTyrLeuIleSerThrAsnAlaArgLysLeuThrLysValIleMetIleArgSerL : 354 |||||| !.!!! !:!!! :!!!.! ||| !::! !!:!!!!:!!:!.!!!!| TrpTyrThrPheTyrSerIleSerHisValLeuTyrArgPheLeuIleMetAsnThrL 888485 : TGGTACACGTTCTACTCGATATCGCACGTTCTGTATCGATTCTTAATCATGAACACCT : 888542 355 : euTyrProCysHisLeuThrAlaGlyLysIleThrSerLeuSerMetGluThrPheGl : 373 || ! ||||||.!.|||! !||| !||||||! ! !!|||!:!|||||||||||| euLysProCysGluLeuIleAlaLeuLysIleIleProLeuAsnMetGluThrPheLe 888543 : TAAAACCTTGCGAACTGATTGCTTTAAAGATAATACCGCTGAACATGGAAACGTTTCT : 888599 374 : ySer >>>> Target Intron 1 >>>> LeuMetLysThrSerMetSerTyrP : 383 !||| 504 bp :!!! :!!|||:!!!!:||||||| uSer++ ++ValThrGlnThrAlaIleSerTyrP 888600 : GTCGgt.........................agGTTACACAGACTGCCATATCGTACT : 889133 384 : heThrValLeuLeuSer : 388 ||||||||||| !||| heThrValLeuSerSer 889134 : TCACCGTTCTAAGCTCG : 889150 vulgar: NvOr174PSE 334 388 . KQ414735.1 888484 889150 + 103 M 40 120 5 0 2 I 0 500 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 888485 889150 103 + . gene_id 1 ; sequence NvOr174PSE ; gene_orientation + KQ414735.1 exonerate:protein2genome:local cds 888485 888604 . + . KQ414735.1 exonerate:protein2genome:local exon 888485 888604 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local splice5 888605 888606 . + . intron_id 1 ; splice_site "GT" KQ414735.1 exonerate:protein2genome:local intron 888605 889108 . + . intron_id 1 KQ414735.1 exonerate:protein2genome:local splice3 889107 889108 . + . intron_id 0 ; splice_site "AG" KQ414735.1 exonerate:protein2genome:local cds 889109 889150 . + . KQ414735.1 exonerate:protein2genome:local exon 889109 889150 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 888485 889150 103 + . alignment_id 1 ; Query NvOr174PSE ; Align 888485 335 120 ; Align 889109 375 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 160 Query range: 295 -> 391 Target range: 12816 -> 12388 296 : LysPheValArgIleMetAlaPhePheValGlyLeuIleIleHisLeuLeuTyrLeuAsn : 315 :!!|||!.!!:! ! .!!|||.!!||| !! !:!::!!|||:!!|||||||||!.! GluPheAlaLysAspCysThrPheIleValIleGlnLeuValHisIleLeuTyrLeuThr 12816 : GAGTTTGCCAAGGATTGCACATTTATCGTGATTCAATTGGTACACATACTTTACCTAACT : 12759 316 : TrpValGlyGlnLysIleIleAspSerSerGluAspValPheLeuAla{Al} >>>> T : 332 !|||||| :!:||||||:!!!:!|||!!::!!||| !:!!{ } LeuGlnGlyGlnPheValIleAspAlaAsnGluGluIlePheGluSer{Il}++ 12758 : CTTCAAGGACAATTCGTGATCGACGCGAACGAGGAAATCTTCGAATCG{AT}gt...... : 12704 333 : arget Intron 1 >>>> {a}TyrCysSerLysTrpTyrValIleSerThrSerAla : 344 62 bp {!}||| !!:!! !|||||| !! !..!! !!!!.!! ++{e}TyrSerAlaLeuTrpTyrAsnSerAspLysArgThr 12703 : ...................ag{A}TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACG : 12610 345 : ArgAlaPheIleLysIleIleMetValArgAlaLeuGluProCysArgLeuThrAlaGly : 364 !:!:!!!!..!! !:!! :!: !!.!..!|||... !! !!:!:!!||||||||| GlnSerLeuPheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGly 12609 : CAATCGTTGTTTGTATTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGT : 12550 365 : GlyLeuSerThrLeuCysMetGluSerPheGlyIle >>>> Target Intron 2 > : 377 ||||||! !|||:!! !:!!:!!||||||..! 78 bp GlyLeuIleThrMetAsnLeuGlnSerPheSerGlu++ 12549 : GGACTAATTACAATGAACTTGCAAAGTTTCTCAGAGgt...................... : 12509 378 : >>> LeuIleLysThrSerValSerTyrPheThrValPheLeuSerVal : 391 :!!:!!||||||||||||||||||!:!! !|||.!. !|||||| ++IleValLysThrSerValSerTyrTyrMetValLeuLysSerVal 12508 : ...agATTGTAAAGACGTCTGTCTCGTACTACATGGTACTGAAATCCGTA : 12389 vulgar: NvOr175 295 391 . KQ414772.1 12816 12388 - 160 M 36 108 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 44 132 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 12389 12816 160 - . gene_id 1 ; sequence NvOr175 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 12707 12816 . - . KQ414772.1 exonerate:protein2genome:local exon 12707 12816 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 12705 12706 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 12645 12706 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 12645 12646 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 12512 12644 . - . KQ414772.1 exonerate:protein2genome:local exon 12512 12644 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 12510 12511 . - . intron_id 2 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 12434 12511 . - . intron_id 2 KQ414772.1 exonerate:protein2genome:local splice3 12434 12435 . - . intron_id 1 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 12389 12433 . - . KQ414772.1 exonerate:protein2genome:local exon 12389 12433 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 12389 12816 160 - . alignment_id 1 ; Query NvOr175 ; Align 12817 296 108 ; Align 12644 333 132 ; Align 12434 377 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 127 -> 209 Target range: 45970 -> 45727 128 : GlnValTyrValTrpPheGlyTrpThrValTyrThrLeuMetProPheIleProTyrPhe : 147 ..!||| !:!!!::.!!||| !:!!|||!:!:!! ! !|||.!!||||||!:!.!! SerValThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIle 45970 : TCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATC : 45913 148 : LeuAspLysValSerProLeuAsnGluSerArgProLeuLeuMetProPheTyrAlaAsp : 167 |||||| !:!!||||||||||||||||||||||||! !||| !!!:! ! ||| LeuAspLeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAla--- 45912 : CTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCC--- : 45853 168 : TyrIleValPheAspGlnAlaAspTyrHisTyrThrSerCysPheHisIleAlaPheVal : 187 ||| ! !|||:!!! !! !||||||:!!||| ! ! :!!! !::! ! TyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValValGlyTyrThrSerAlaCys 45852 : TACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTGGGGTACACCAGCGCGTGC : 45796 188 : TyrIleSerSerAlaLeuLeuPheCysGlyValAspAlaThrPheValMetSerValGln : 207 !! !:!!!.!|||:!!.!! !|||!.!||| !! !.!.:!! !|||!:: IleGlyMetAlaGlyLeuValLeuValGlyAlaAspIleIleMetIleHisLeuValArg 45795 : ATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATTATGATACATCTTGTACGT : 45736 208 : HisThr : 209 ! ||| ProThr 45735 : CCAACC : 45728 vulgar: NvOr175 127 209 . KQ414772.1 45970 45727 - 116 M 39 117 G 1 0 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45728 45970 116 - . gene_id 2 ; sequence NvOr175 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45728 45970 . - . KQ414772.1 exonerate:protein2genome:local exon 45728 45970 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 45728 45970 116 - . alignment_id 2 ; Query NvOr175 ; Align 45971 128 117 ; Align 45854 168 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 327 -> 387 Target range: 19643 -> 19378 328 : ValPheLeuAlaAlaTyrCysSerLysTrpTyrValIleSerThrSerAlaArgAlaPhe : 347 :!! !!|||..! !||| |||:!!|||||| !.!!!!! !!!!!.!!!:!|||!!. LeuValLeuCysArgTyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeu 19643 : CTGGTCCTTTGCAGATACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTG : 19586 348 : IleLysIleIleMetValArgAlaLeuGluProCysArgLeuThrAlaGlyGlyLeuSer : 367 ! !:!: !:!! !!!!..!|||.!.||| !! !|||||||||||||||:!!!!! TyrValLeuAlaLeuArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThr 19585 : TATGTATTGGCATTGAGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACG : 19526 368 : ThrLeuCysMetGluSerPheGlyIle >>>> Target Intron 1 >>>> LeuI : 378 |||||| !:!:..!||||||!.! 85 bp :!!| ThrLeuAsnLeuArgSerPheAlaGlu++ ++IleI 19525 : ACGTTGAATCTACGATCGTTCGCAGAGgt.........................agATCA : 19408 379 : leLysThrSerValSerTyrPheThrVal : 387 |||||.!!||||||||||||!:!|||||| leLysAlaSerValSerTyrTyrThrVal 19407 : TCAAAGCATCTGTTTCCTACTACACGGTG : 19379 vulgar: NvOr175 327 387 . KQ414772.1 19643 19378 - 110 M 49 147 5 0 2 I 0 81 3 0 2 M 11 33 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 19379 19643 110 - . gene_id 3 ; sequence NvOr175 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 19497 19643 . - . KQ414772.1 exonerate:protein2genome:local exon 19497 19643 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 19495 19496 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 19412 19496 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 19412 19413 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 19379 19411 . - . KQ414772.1 exonerate:protein2genome:local exon 19379 19411 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 19379 19643 110 - . alignment_id 3 ; Query NvOr175 ; Align 19644 328 147 ; Align 19412 377 33 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 325 -> 390 Target range: 37064 -> 36630 326 : GluAspValPheLeuAlaAlaTyrCysSerLysTrpTyrValIleSerThrSerAlaArg : 345 :!!!!::!!|||:!! ! !||| !!:!!||||||||| !! !||| !!!!!.!!!:! GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 37064 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 37007 346 : AlaPheIleLysIleIleMetValArgAlaLeuGluProCysArgLeuThrAlaGlyGly : 365 .!!.!. ! !:!! !:!! !|||::!||| ||| !||||||||||||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 37006 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 36947 366 : LeuSerThrLeuCysMetGluSerPheGlyIle >>>> Target Intron 1 >>>> : 377 |||! !:!!||| !:!!|||!!!|||!.! 239 bp LeuIleSerLeuAsnLeuGluThrPheAlaGlu++ 36946 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGaggt......................... : 36909 378 : LeuIleLysThrSerValSerTyrPheThrValPheLeuSer : 390 :!!:!!||| !|||||||||:::|||||||||.!. !||| ++IleLeuLysGlySerValSerPhePheThrValMetLysSer 36908 : agaTCTTAAAAGGGtccgtttcctttttcacgGTAATGAAATCG : 36631 vulgar: NvOr175 325 390 . KQ414772.1 37064 36630 - 103 M 51 153 5 0 2 I 0 235 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 36631 37064 103 - . gene_id 4 ; sequence NvOr175 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 36912 37064 . - . KQ414772.1 exonerate:protein2genome:local exon 36912 37064 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 36910 36911 . - . intron_id 1 ; splice_site "gt" KQ414772.1 exonerate:protein2genome:local intron 36673 36911 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 36673 36674 . - . intron_id 0 ; splice_site "ag" KQ414772.1 exonerate:protein2genome:local cds 36631 36672 . - . KQ414772.1 exonerate:protein2genome:local exon 36631 36672 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 36631 37064 103 - . alignment_id 4 ; Query NvOr175 ; Align 37065 326 153 ; Align 36673 377 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 325 -> 390 Target range: 35630 -> 35196 326 : GluAspValPheLeuAlaAlaTyrCysSerLysTrpTyrValIleSerThrSerAlaArg : 345 :!!!!::!!|||:!! ! !||| !!:!!||||||||| !! !||| !!!!!.!!!:! GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 35630 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 35573 346 : AlaPheIleLysIleIleMetValArgAlaLeuGluProCysArgLeuThrAlaGlyGly : 365 .!!.!. ! !:!! !:!! !|||::!||| ||| !||||||||||||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 35572 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 35513 366 : LeuSerThrLeuCysMetGluSerPheGlyIle >>>> Target Intron 1 >>>> : 377 |||! !:!!||| !:!!|||!!!|||!.! 239 bp LeuIleSerLeuAsnLeuGluThrPheAlaGlu++ 35512 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGAGgt......................... : 35475 378 : LeuIleLysThrSerValSerTyrPheThrValPheLeuSer : 390 :!!:!!||| !|||||||||:::|||||||||.!. !||| ++IleLeuLysGlySerValSerPhePheThrValMetLysSer 35474 : agaTCTTAAAAGGGtccgtttcctttttcacgGTAATGAAATCG : 35197 vulgar: NvOr175 325 390 . KQ414772.1 35630 35196 - 103 M 51 153 5 0 2 I 0 235 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 35197 35630 103 - . gene_id 5 ; sequence NvOr175 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 35478 35630 . - . KQ414772.1 exonerate:protein2genome:local exon 35478 35630 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 35476 35477 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 35239 35477 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 35239 35240 . - . intron_id 0 ; splice_site "ag" KQ414772.1 exonerate:protein2genome:local cds 35197 35238 . - . KQ414772.1 exonerate:protein2genome:local exon 35197 35238 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 35197 35630 103 - . alignment_id 5 ; Query NvOr175 ; Align 35631 326 153 ; Align 35239 377 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 158 -> 215 Target range: 17979 -> 17808 159 : ProLeuLeuMetProPheTyrAlaAspTyrIleValPheAspGlnAlaAspTyrHisTyr : 178 ||| !|||... ! !! !!! ||| ! !! !!|||:!!!.!!!:|||:!!||| ProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyrTyr 17979 : CCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTAT : 17922 179 : ThrSerCysPheHisIleAlaPheValTyrIleSerSerAlaLeuLeuPheCysGlyVal : 198 !! ! .!!||| !.!!! !..! !:!:! ! !!.!:!!:!!!:!|||!.! ! TyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCys 17921 : TACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 17862 199 : AspAlaThrPheValMetSerValGlnHisThrCysGlyLeuPheAlaIle : 215 |||.!!!:!!:!:!!:!: !|||||||||||||||||||||||||||:!: AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaVal 17861 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTG : 17809 vulgar: NvOr175 158 215 . KQ414772.1 17979 17808 - 102 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17809 17979 102 - . gene_id 6 ; sequence NvOr175 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17809 17979 . - . KQ414772.1 exonerate:protein2genome:local exon 17809 17979 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17809 17979 102 - . alignment_id 6 ; Query NvOr175 ; Align 17980 159 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 323 -> 387 Target range: 16806 -> 16531 324 : SerSerGluAspValPheLeuAlaAlaTyrCysSerLysTrpTyrValIleSerThrSer : 343 !!! !!!!:||| ! !:!! !||| ||| !||||||..!! !|||:!!!.! ThrArgAspAspAsnGluThrSerArgTyrGluSerLeuTrpTyrThrSerSerSerLys 16806 : ACACGCGATGATAATGAAACTTCCAGATACGAATCATTATGGTACACAAGTTCTTCGAAA : 16749 344 : AlaArgAlaPheIleLysIleIleMetValArgAlaLeuGluProCysArgLeuThrAla : 363 .!!!:!|||!!. ! !:!! :!: !||| !||| !||| ! !!||||||||| ThrGlnAlaLeuTyrValValAlaLeuArgArgAsnLeuThrProThrCysLeuThrAla 16748 : ACACAAGCATTATACGTGGTAGCGTTACGAAGAAACCTAACACCTACCTGTTTAACGGCT : 16689 364 : GlyGlyLeuSerThrLeuCysMetGluSerPheGlyIle >>>> Target Intron : 377 ||||||||| ! !||| !|||:!!||||||!.! 83 bp GlyGlyLeuValGlnLeuAsnMetGlnSerPheAlaGlu++ 16688 : GGCGGTTTAGTGCAACTGAACATGCAAAGCTTCGCAGAGgt................... : 16645 378 : 1 >>>> LeuIleLysThrSerValSerTyrPheThrVal : 387 :!!:!!|||! !||||||||||||!:!|||||| ++ValValLysMetSerValSerTyrTyrThrVal 16644 : ......agGTGGTAAAAATGTCCGTTTCCTATTATACGGTG : 16532 vulgar: NvOr175 323 387 . KQ414772.1 16806 16531 - 102 M 53 159 5 0 2 I 0 79 3 0 2 M 11 33 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 16532 16806 102 - . gene_id 7 ; sequence NvOr175 ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 16648 16806 . - . KQ414772.1 exonerate:protein2genome:local exon 16648 16806 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 16646 16647 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 16565 16647 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 16565 16566 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 16532 16564 . - . KQ414772.1 exonerate:protein2genome:local exon 16532 16564 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 16532 16806 102 - . alignment_id 7 ; Query NvOr175 ; Align 16807 324 159 ; Align 16565 377 33 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr174PSE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 157 -> 223 Target range: 17979 -> 17781 158 : ProLeuLeuLeuProPheTyrAlaAsnTyrIlePhePheGluGlnLeuAspTyrHisTyr : 177 ||| !|||! ! ! !! !!...||| !||| !!!!::!!:!!!!:|||:!!||| ProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyrTyr 17979 : CCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTAT : 17922 178 : GluThrAlaLeuHisAlaPhePheValTyrPhePheAlaThrSerLeuPheAlaGlyIle : 197 ! ! ! !||||||!.! ! !..! !!!..!!!.!..! !:!!!:!..!!.! ! TyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCys 17921 : TACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 17862 198 : AspThrIleTyrValSerThrValLysHisThrCysGlyLeuPheAlaIleIleZedLeu : 217 ||||||! !|||:!! ! !|||:!!|||||||||||||||||||||:!: ! ! ! AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly*** 17861 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGGTGA : 17802 218 : GluThrLeuAlaLysThr : 223 |||!.!||| ||| GluAsnLeuArgAspThr 17801 : GAAAACTTGAGagataca : 17782 vulgar: NvOr174PSE 157 223 . KQ414772.1 17979 17781 - 107 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17782 17979 107 - . gene_id 1 ; sequence NvOr174PSE ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17782 17979 . - . KQ414772.1 exonerate:protein2genome:local exon 17782 17979 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17782 17979 107 - . alignment_id 1 ; Query NvOr174PSE ; Align 17980 158 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr170 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 159 Query range: 152 -> 234 Target range: 33661 -> 33415 153 : CysLeuLeuPheValThrLeuProAlaValIleProMetIleLeuAsnIleIleLeuThr : 172 |||! !:!!.!. !!!:!! ! !! !! !!|||||| .!!:!!:!!:!! |||:!! CysTyrIleMetPheSerSerAlaProPheIleProHisPheIleAspValAlaLeuSer 33661 : TGCTACATCATGTTCAGCTCGGCGCCTTTTATACCGCATTTTATCGATGTTGCGTTGTCG : 33604 173 : ArgAsnGluThrPheLysLysSerLeuCysIleTyrCysGluTyrTyrIleAspGlnAsp : 192 !:!||||||:!! ||| !|||||| ! !..! ! ||| !|||||||||||| LysAsnGluSerArgLysLeuSerLeuMetTyrProAlaTyrTyrGlyIleAspGlnAsp 33603 : AAAAACGAGTCACGAAAATTAAGTTTGATGTACCCTGCCTATTACGGCATTGACCAGGac : 33544 193 : LysTyrPhePheTyrIlePheLeuHisHisIleIleAlaGlyIleAlaThrIlePheLeu : 212 ||||||::::::|||:::... !||| !!:! !|||||| !|||..!.!!|||:!! LysTyrTyrTyrTyrLeuMetAlaHisMetMetSerAlaGlyAlaAlaValPhePheVal 33543 : aagtattattattatctaatgGCTCACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTA : 33484 213 : ThrIleGlyIleAspThrSerTyrValAsnCysValGlnHisValLeuAlaLeuPheAsn : 232 !!!:..! !||||||! !|||:!!||| !|||||||||!.!! !!.!|||!!. ! PheMetSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuPhe 33483 : TTTATGTCCTGCGACACGATTTATATGAATATCGTTCAACACGCGTGCGGATTGTTGTTC : 33424 233 : ValSer : 234 :!!||| IleSer 33423 : ATTTCC : 33416 vulgar: NvOr170 152 234 . KQ414772.1 33661 33415 - 159 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33416 33661 159 - . gene_id 1 ; sequence NvOr170 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33416 33661 . - . KQ414772.1 exonerate:protein2genome:local exon 33416 33661 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 33416 33661 159 - . alignment_id 1 ; Query NvOr170 ; Align 33662 153 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr170 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 144 Query range: 148 -> 234 Target range: 42733 -> 42475 149 : AlaAlaMetSerCysLeuLeuPheValThrLeuProAlaValIleProMetIleLeuAsn : 168 .!!!.!!!:!!!|||!!! !.!. !!! !! ! !! !! !|||||| :!!! !:!! ThrGlyIleCysCysPheThrMetPheIleSerAlaProTyrIleProHisValTyrAsp 42733 : ACTGGAATATGTTGCTTCACAATGTTTATCTCTGCGCCTTATATACCGCATGTATATGAT : 42676 169 : IleIleLeuThrArgAsnGluThrPheLysLysSerLeuCysIleTyrCysGluTyrTyr : 188 :!!!!:|||:!!!:!||||||:!! ||| !.!!!!! ! ! !..! ! ||| ! ValMetLeuSerLysAsnGluSerArgLysLeuGlyPheIleTyrProAlaTyrTyrGly 42675 : GTTATGTTATCGAAAAACGAGTCACGAAAGTTGGGTTTCATTTACCCTGCCTATTATGGC : 42616 189 : IleAspGlnAspLysTyrPhePheTyrIlePheLeuHisHisIleIleAlaGlyIleAla : 208 :!!|||||||||||||||!:!!:!||||||.!. !||| ! ! !!.!|||:!!!.! ValAspGlnAspLysTyrTyrTyrTyrIleIleAlaHisMetThrSerGlyGlyLeuVal 42615 : GTTGATCAAGACAAGTATTATTACTATATAATAGCTCACATGACATCTGGGGGCTTAGTG : 42556 209 : ThrIlePheLeuThrIleGlyIleAspThrSerTyrValAsnCysValGlnHisValLeu : 228 ..!.!!||| ! !|||..! !||||||! !|||:!!||| !|||||||||!.!! ! ValPhePheThrPheIleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCys 42555 : GTGTTTTTCACCTTTATCTCCTGCGACACGATTTACATGAATATCGTGCAACACGCGTGC : 42496 229 : AlaLeuPheAsnValSer : 234 !.!|||!!. :!!||| GlyLeuLeuLeuIleSer 42495 : GGATTGTTGTTGATTTCT : 42476 vulgar: NvOr170 148 234 . KQ414772.1 42733 42475 - 144 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42476 42733 144 - . gene_id 2 ; sequence NvOr170 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42476 42733 . - . KQ414772.1 exonerate:protein2genome:local exon 42476 42733 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42476 42733 144 - . alignment_id 2 ; Query NvOr170 ; Align 42734 149 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr168 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 154 Query range: 128 -> 222 Target range: 24464 -> 24182 129 : ThrLeuThrIlePheTyrMetGlyTyrMetPheThrAlaCysIleSerPheValThrLeu : 148 |||...::: ...|||:!:!.! ! ! ! !||| ! !.!! !!||| ! ThrPheSerSerLeuTyrValAlaAlaAsnGlyIlePheCysTyrValLeuPheThrAla 24464 : acattttcttctctataTGTCGCAGCAAATGGAATCTTCTGCTACGTTCTCTTCACCGCA : 24407 149 : ProSerAlaValProLeuMetLeuAspLeuIleLeuProLeuAsnGluSerArgGlyVal : 168 !:!! !..!|||! !:!:||||||||||||! !||| !|||||||||||||||||| ValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyVal 24406 : GTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTG : 24347 169 : AsnLeuCysTyrTyrAlaGluTyrPheIleAspGlnGlnLysTyrPheIleTyrLeuLeu : 188 ..!!!! !||| !|||.!.||| !:!!|||:!!:!!:!!:!!!:! !||||||:!! GlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyrTyrTyrLeuMet 24346 : GGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTACTACTATCTGATG : 24287 189 : LeuHisThrPheIleCysValSerPheThrIleLeuIleValThrAlaValAspSerThr : 208 !|||! !.!! ! :!!!!! !!..!.!!!!!:!! !! !:!! !|||!!!! ! GlyHisMetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThrIle 24286 : GGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATC : 24227 209 : PheValSerIleValTyrHisAlaValGlyLeuPheAspIle : 222 !:!:!!!:!|||||| ! |||||| !||||||!!.:!!:!! TyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeu 24226 : TACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTC : 24183 vulgar: NvOr168 128 222 . KQ414772.1 24464 24182 - 154 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24183 24464 154 - . gene_id 1 ; sequence NvOr168 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24183 24464 . - . KQ414772.1 exonerate:protein2genome:local exon 24183 24464 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 24183 24464 154 - . alignment_id 1 ; Query NvOr168 ; Align 24465 129 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr168 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 148 Query range: 141 -> 222 Target range: 29604 -> 29361 142 : CysIleSerPheValThrLeuProSerAlaValProLeuMetLeuAspLeuIleLeuPro : 161 ||| ! !.!. !!|||! ! !:!! !..!|||! !:!:||||||||||||! !||| CysTyrValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerPro 29604 : TGCTACGTTATATTCACCTCAGTGGCGATAACCCCTCGTGTTCTCGACCTTATTTCGCCG : 29547 162 : LeuAsnGluSerArgGlyValAsnLeuCysTyrTyrAlaGluTyrPheIleAspGlnGln : 181 !||||||||||||||||||..!!!! !||| !||| ! ||| !:!!|||:!!:!! LysAsnGluSerArgGlyValGlyPheIleTyrProAlaTyrTyrGlyLeuAspGluGlu 29546 : AAAAACGAATCGCGCGGAGTGGGCTTCATTTATCCTGCATACTACGGTCTTGACGAAGAG : 29487 182 : LysTyrPheIleTyrLeuLeuLeuHisThrPheIleCysValSerPheThrIleLeuIle : 201 :!!:!!!:! !||||||:!! !|||! !.!! ! :!!!!! !!..!.!!!!!:!! GluHisTyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheVal 29486 : GAGCATTACTACTATCTGATGGGTCACATGCTTTCCGTGATAACCGTCGTGTTTTTCGTC : 29427 202 : ValThrAlaValAspSerThrPheValSerIleValTyrHisAlaValGlyLeuPheAsp : 221 !! !:!! !|||!!!! !!:!:!!!:!:!!||| ! |||||| !||||||!!.:!! TyrIleSerCysAspThrIleTyrMetAsnValValGlnHisAlaCysGlyLeuLeuAsn 29426 : TACATCTCCTGTGACACGATCTATATGAATGTCGTGCAACACGCGTGTGGATTATTGAAC : 29367 222 : Ile : 222 :!! Val 29366 : GTC : 29362 vulgar: NvOr168 141 222 . KQ414772.1 29604 29361 - 148 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29362 29604 148 - . gene_id 2 ; sequence NvOr168 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29362 29604 . - . KQ414772.1 exonerate:protein2genome:local exon 29362 29604 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 29362 29604 148 - . alignment_id 2 ; Query NvOr168 ; Align 29605 142 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr168 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 146 Query range: 141 -> 222 Target range: 38018 -> 37775 142 : CysIleSerPheValThrLeuProSerAlaValProLeuMetLeuAspLeuIleLeuPro : 161 ||| ! !.!. !!|||! ! !:!! !..!|||! !:!:||||||||||||! !||| CysTyrValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerPro 38018 : TGCTACGTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCG : 37961 162 : LeuAsnGluSerArgGlyValAsnLeuCysTyrTyrAlaGluTyrPheIleAspGlnGln : 181 !||||||||||||||||||:!!!!! !||| !||| ! ||| !:!!|||:!!:!! LysAsnGluSerArgGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAspGluGlu 37960 : AAAAACGAATCGCGTGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAG : 37901 182 : LysTyrPheIleTyrLeuLeuLeuHisThrPheIleCysValSerPheThrIleLeuIle : 201 :!!:!!!:! ! !|||:!! !|||! !.!! ! :!!!!! ! ..!.!!!!!:!: GluHisTyrTyrIleLeuMetGlyHisMetLeuCysValIleThrValValPhePheVal 37900 : GAACATTATTACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTG : 37841 202 : ValThrAlaValAspSerThrPheValSerIleValTyrHisAlaValGlyLeuPheAsp : 221 !! !:!! !|||!!!! !!:!:!!||||||||| ! |||||| !||||||.!.:!! TyrIleSerCysAspThrIleTyrMetSerIleValGlnHisAlaCysGlyLeuLeuAsn 37840 : TACATCTCCTGTGACACGATCTACATGAGCATCGTTCAACACGCGTGCGGATTACTGAAC : 37781 222 : Ile : 222 :!! Val 37780 : GTC : 37776 vulgar: NvOr168 141 222 . KQ414772.1 38018 37775 - 146 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37776 38018 146 - . gene_id 3 ; sequence NvOr168 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37776 38018 . - . KQ414772.1 exonerate:protein2genome:local exon 37776 38018 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 37776 38018 146 - . alignment_id 3 ; Query NvOr168 ; Align 38019 142 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr168 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 144 Query range: 140 -> 229 Target range: 14145 -> 13878 141 : AlaCysIleSerPheValThrLeuProSerAlaValProLeuMetLeuAspLeuIleLeu : 160 !.!|||:!!! !.!. !!..! ! !! !!!.!..!|||! !!!:||||||:!!:!!||| ValCysValIleLeuPheValThrThrProValThrProHisIleLeuAspIleLeuLeu 14145 : GTTTGTGTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATTTTGGACATTTTACTA : 14088 161 : ProLeuAsnGluSerArgGlyValAsnLeuCysTyrTyrAlaGluTyrPheIleAspGln : 180 ||| !||||||||||||! !||| ! ! !||| ||| ! ||||||! !|||:!! ProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGlu 14087 : CCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAG : 14028 181 : GlnLysTyrPheIleTyrLeuLeuLeuHisThrPheIleCysValSerPheThrIleLeu : 200 !!.|||||| !:!:|||:!!:!! !|||! ! ! :!! ! ! ..!.!!! ! HisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyr 14027 : CATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTAC : 13968 201 : IleValThrAlaValAspSerThrPheValSerIleValTyrHisAlaValGlyLeuPhe : 220 :!: !..!||| !|||!!!!:!!:!:!!! !:!!||| ! |||!.! !||||||!!. ValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeu 13967 : GTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTG : 13908 221 : AspIleLeuGluTyrArgMetArgAsn : 229 ! !:!:! !! ::::::|||::: AlaValSerGly***LysIleArgSer 13907 : GCCGTGTCCGGgtaaaaaattcgatcg : 13879 vulgar: NvOr168 140 229 . KQ414772.1 14145 13878 - 144 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13879 14145 144 - . gene_id 4 ; sequence NvOr168 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13879 14145 . - . KQ414772.1 exonerate:protein2genome:local exon 13879 14145 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13879 14145 144 - . alignment_id 4 ; Query NvOr168 ; Align 14146 141 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr168 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 142 -> 213 Target range: 45949 -> 45736 143 : IleSerPheValThrLeuProSerAlaValProLeuMetLeuAspLeuIleLeuProLeu : 162 :!:||| ! !!:!! ! !! !! !:!!|||!!!!!:||||||||||||! !|||||| ValSerValPheSerThrAlaProLeuIleProPheIleLeuAspLeuIleSerProLeu 45949 : GTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTGGACCTAATTTCACCTTTG : 45892 163 : AsnGluSerArgGlyValAsnLeuCysTyrTyrAlaGluTyrPheIleAspGlnGlnLys : 182 |||||||||||| ! ! ! !..!||| ! ||| ! ! !!:!.!!:!!! !.!. ! AsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAsp 45891 : AACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGAC : 45832 183 : TyrPheIleTyrLeuLeuLeuHisThrPheIleCysValSerPheThrIleLeuIleVal : 202 |||!:! !|||:!!:!! !:!!||| ! |||:!!.!!.!..!! !|||:!::!! TyrTyrTyrTyrValValGlyTyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeu 45831 : TACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTT : 45772 203 : ThrAlaValAspSerThrPheValSerIleVal : 213 ..!!.!!.!|||! !! !.!.:!! !:!!||| ValGlyAlaAspIleIleMetIleHisLeuVal 45771 : GTCGGCGCTGACATTATTATGATACATCTTGTA : 45737 vulgar: NvOr168 142 213 . KQ414772.1 45949 45736 - 103 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45737 45949 103 - . gene_id 5 ; sequence NvOr168 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45737 45949 . - . KQ414772.1 exonerate:protein2genome:local exon 45737 45949 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45737 45949 103 - . alignment_id 5 ; Query NvOr168 ; Align 45950 143 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr164PSE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 3 -> 75 Target range: 20577 -> 20361 4 : ValPheAlaLeuAlaAlaTyrAlaSerLeuProSerPheGlyProValIleMetAsnIle : 23 :!!||| !! !|||||| !! !! ! ! !!|||!.!|||:!!|||:!!:!!||| LeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAspIle 20577 : TTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATT : 20520 24 : LeuPheProLeuAsnGluThrArgArgLysGlnLeuProAlaProAlaGluTyrPheVal : 43 ! ! |||||||||:!!||||||!:!::: !!!! ! !|||||| ! |||!:::!! TyrAlaProLeuAsnLysThrArgLysArgValPheValTyrProAlaTyrTyrTrpMet 20519 : TACGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATG : 20460 44 : AspGluGluLysTyrLeuTyrIleLeuPheLeuHisGlyMetIleCysCysIlePheVal : 63 ||| |||:!!|||! ! |||:!!.!.:!!||| !|||.!! |||.!.||| AspProGluGlnTyrTyrMetIleMetIleIleHisIleMetPheValValIleMetVal 20459 : GATCCTGAGCAATACTACATGATAATGATAATACACATAATGTTCGTGGTGATCATGGTC : 20400 64 : ProIleLeuTyrValThrIleAspSerMetHisVal : 75 !:!!:!!!:! !.!! !|||! !! :!!||| CysValIlePheCysAlaCysAspMetAsnTyrVal 20399 : TGTGTCATATTCTGTGCTTGCGACATGAACTACGTG : 20362 vulgar: NvOr164PSE 3 75 . KQ414772.1 20577 20361 - 121 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20362 20577 121 - . gene_id 1 ; sequence NvOr164PSE ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20362 20577 . - . KQ414772.1 exonerate:protein2genome:local exon 20362 20577 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20362 20577 121 - . alignment_id 1 ; Query NvOr164PSE ; Align 20578 4 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr176PSE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 74 -> 162 Target range: 45985 -> 45727 75 : LeuValValPheTyrThrIleTyrAlaPheAlaAlaTrpLeuValTyrThrSerIlePro : 94 ||| !:!! ! !:!!:!! ! !!:! !!.! !! !|||!:!:!!!!! ||| LeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThrAlaPro 45985 : TTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCC : 45928 95 : PheIleProPheIleLeuAspLeuValHisProLeuGluAsnGlyThrArgProLeuPhe : 114 .!!|||||||||||||||||||||:!! |||||| |||! !:!!||||||! !!!. LeuIleProPheIleLeuAspLeuIleSerProLeu---AsnGluSerArgProArgLeu 45927 : CTCATACCGTTCATCCTGGACCTAATTTCACCTTTG---AACGAGTCTCGTCCACGTTTG : 45871 115 : MetProPheTyrAlaAspTyrValPhePheAspGlnAsnAspTyrHisTyrSerAlaCys : 134 !!!:! ! ||| ||| !!:!|||:!!! !:!!||||||:!!|||! !!.! TyrAlaTyrLysAla---TyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValVal 45870 : TACGCCTATAAAGCC---TACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTG : 45814 135 : GlyHisValAlaValIleTyrPheThrSerPheLeuLeuTyrSerGlyValAspGlyIle : 154 |||:!!..!::!!.! ! ! !:!! |||:!! ! !|||!.!||| !||| GlyTyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAlaAspIleIle 45813 : GGGTACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATT : 45754 155 : TyrValLeuThrValLysHisThr : 162 :!!! ! !|||:::! ||| MetIleHisLeuValArgProThr 45753 : ATGATACATCTTGTACGTCCAACC : 45728 vulgar: NvOr176PSE 74 162 . KQ414772.1 45985 45727 - 102 M 32 96 G 1 0 M 12 36 G 1 0 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45728 45985 102 - . gene_id 1 ; sequence NvOr176PSE ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45728 45985 . - . KQ414772.1 exonerate:protein2genome:local exon 45728 45985 . - . insertions 0 ; deletions 2 KQ414772.1 exonerate:protein2genome:local similarity 45728 45985 102 - . alignment_id 1 ; Query NvOr176PSE ; Align 45986 75 96 ; Align 45890 108 36 ; Align 45854 121 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr173 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 121 -> 217 Target range: 14178 -> 13896 122 : TyrLeuValLeuPheTyrThrValTyrValPheLeuAlaTrpValThrCysAsnPheVal : 141 |||:!!||| !!:!! ! !||| !!!.!.!!:!!..! :!! !! ! !..! TyrIleValLysTyrSerIleValAsnAlaIleValCysValIleLeuPheValThrThr 14178 : TACATTGTCAAATATTCGATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGACCACG : 14121 142 : ProPheIleProProLeuLeuAspIleLeuLeuProLeuGluAsnGlyThrHisAspLeu : 161 ||| ! ! !|||! !:!!|||||||||||||||||| :!!|||! !:!!!..|||:!! ProValThrProHisIleLeuAspIleLeuLeuPro---LysAsnGluSerArgAspVal 14120 : CCGGTGACACCGCATATTTTGGACATTTTACTACCG---AAGAACGAGTCACGAGACGTA : 14064 162 : ValTyrProPheTyrAlaAspTyrValPhePheLysGlnThrAspTyrHisTyrGluSer : 181 !.!||| .!!||| !!! !||| !||| ! ! :!! ! ! ||| !! ! ! ! AlaTyr---IleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIle 14063 : GCGTAC---ATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATA : 14007 182 : CysLeuHisValPhePheValTyrPheGlyThrThrSerLeuPheAlaGlyMetAspThr : 201 ! !|||:!! ! !||| !.!!! !..! !! !:!!!:!!.!!.! |||||| IleThrHisMetAlaSerValIleLeuValValPheTyrValTyrValAlaCysAspThr 14006 : ATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACC : 13947 202 : IleTyrValAlaThrValLysHisSerCysGlyLeuPheAlaIleThr : 217 ! !|||:!! !..!|||:!!|||.!!|||||||||!!.|||:!::!! SerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSer 13946 : AGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCC : 13897 vulgar: NvOr173 121 217 . KQ414772.1 14178 13896 - 103 M 32 96 G 1 0 M 9 27 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13897 14178 103 - . gene_id 1 ; sequence NvOr173 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13897 14178 . - . KQ414772.1 exonerate:protein2genome:local exon 13897 14178 . - . insertions 0 ; deletions 2 KQ414772.1 exonerate:protein2genome:local similarity 13897 14178 103 - . alignment_id 1 ; Query NvOr173 ; Align 14179 122 96 ; Align 14083 155 27 ; Align 14056 165 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr172PSE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 266 -> 333 Target range: 12780 -> 12517 267 : MetIleHisLeuLeuTyrLeuSerTyrProGlyGlnLysValLeuAspTyrSerSerSer : 286 :!!:!!|||:!!|||||||||!!! !! !|||||| |||:!!||| !:!..!..! LeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAspAlaAsnGluGlu 12780 : TTGGTACACATACTTTACCTAACTCTTCAAGGACAATTCGTGATCGACGCGAACGAGGAA : 12723 287 : IleCysGlnGlu{Se} >>>> Target Intron 1 >>>> {r}TyrThrAsnGlu : 295 |||! !:!!..!{! } 62 bp {!}|||!:! ! ! IlePheGluSer{Il}++ ++{e}TyrSerAlaLeu 12722 : ATCTTCGAATCG{AT}gt.........................ag{A}TACAGCGCTTTG : 12634 296 : TrpTyrLeuIleSerLysLysSerLysIleLeuLeuLysPheMetMetLeuArgCysIle : 315 |||||| !! !..!|||!:!!!!:!! |||!!! !!!. !:!: !!.!|||:!! TrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeuArgAsnCysLeu 12633 : TGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGTTAAGAAATTGTCTA : 12574 316 : LysProSerValLeuThrAlaGlyGlyLeuTyrIleMetAsnTyrGluAsnTyr : 333 ... !! !! !:!!||||||||||||||| !! !||||||! :!!!:!!:! SerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGlnSerPhe 12573 : TCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAAAGTTTC : 12518 vulgar: NvOr172PSE 266 333 . KQ414772.1 12780 12517 - 111 M 24 72 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 12518 12780 111 - . gene_id 1 ; sequence NvOr172PSE ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 12707 12780 . - . KQ414772.1 exonerate:protein2genome:local exon 12707 12780 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 12705 12706 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 12645 12706 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 12645 12646 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 12518 12644 . - . KQ414772.1 exonerate:protein2genome:local exon 12518 12644 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 12518 12780 111 - . alignment_id 1 ; Query NvOr172PSE ; Align 12781 267 72 ; Align 12644 292 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr172PSE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 253 -> 333 Target range: 37290 -> 36917 254 : MetGlnPheIleArgLeuAlaMetIleGluValGlyValMetIleHisLeuLeuTyrLeu : 273 |||:!!||| !!:!! !..! .!! !|||! ! !:!!:!!|||||||||!:!||| MetGluPheTyrLysTyrCysAlaPheLeuValValGlnLeuValHisLeuLeuPheLeu 37290 : ATGGAGTTCTACAAGTATTGCGCTTTCTTGGTGGTGCAACTGGTTCATTTGCTTTTCCTT : 37233 274 : SerTyrProGlyGlnLysValLeuAspTyrSerSerSerIleCysGlnGlu{Se} >>> : 291 ||| !! !|||!!. |||:!! !! !..!! !! !! !.!..!.{! } SerIleGlnGlyHisPheValIleLeuSerHisAspMetThrTyrAspAsn{Il}++ 37232 : TCTATCCAGGGACACTTTGTTATACTCTCGCATGACATGACTTACGACAAC{AT}gt... : 37175 292 : > Target Intron 1 >>>> {r}TyrThrAsnGluTrpTyrLeuIleSerLysLys : 302 133 bp {!}|||!:! :!!|||||| !! !||| !!:! ++{e}TyrSerAlaLysTrpTyrAsnSerSerProArg 37174 : ......................ag{A}TATAGCGCAAAATGGTACAACAGTTCGCCGAGA : 37013 303 : SerLysIleLeuLeuLysPheMetMetLeuArgCysIleLysProSerValLeuThrAla : 322 !!!:!!! !|||! ! !.!. :!! !||| !!:!:! ||| !!:!!||||||||| ThrGlnThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAla 37012 : ACGCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCG : 36953 323 : GlyGlyLeuTyrIleMetAsnTyrGluAsnTyr : 333 ||||||||| ! !:!!|||! |||!.!!:! GlyGlyLeuIleSerLeuAsnLeuGluThrPhe 36952 : GGAGGACTGATTTCCTTGAATTTGGAGACTTTT : 36918 vulgar: NvOr172PSE 253 333 . KQ414772.1 37290 36917 - 108 M 37 111 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 36918 37290 108 - . gene_id 2 ; sequence NvOr172PSE ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 37178 37290 . - . KQ414772.1 exonerate:protein2genome:local exon 37178 37290 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 37176 37177 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 37045 37177 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 37045 37046 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 36918 37044 . - . KQ414772.1 exonerate:protein2genome:local exon 36918 37044 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 36918 37290 108 - . alignment_id 2 ; Query NvOr172PSE ; Align 37291 254 111 ; Align 37044 292 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr172PSE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 253 -> 333 Target range: 35856 -> 35483 254 : MetGlnPheIleArgLeuAlaMetIleGluValGlyValMetIleHisLeuLeuTyrLeu : 273 |||:!!||| !!:!! !..! .!! !|||! ! !:!!:!!|||||||||!:!||| MetGluPheTyrLysTyrCysAlaPheLeuValValGlnLeuValHisLeuLeuPheLeu 35856 : ATGGAGTTCTACAAGTATTGCGCTTTCTTGGTGGTGCAACTGGTTCATTTGCTTTTCCTT : 35799 274 : SerTyrProGlyGlnLysValLeuAspTyrSerSerSerIleCysGlnGlu{Se} >>> : 291 ||| !! !|||!!. |||:!! !! !..!! !! !! !.!..!.{! } SerIleGlnGlyHisPheValIleLeuSerHisAspMetThrTyrAspAsn{Il}++ 35798 : TCTATCCAGGGACACTTTGTTATACTCTCGCATGACATGACTTACGACAAC{AT}gt... : 35741 292 : > Target Intron 1 >>>> {r}TyrThrAsnGluTrpTyrLeuIleSerLysLys : 302 133 bp {!}|||!:! :!!|||||| !! !||| !!:! ++{e}TyrSerAlaLysTrpTyrAsnSerSerProArg 35740 : ......................ag{A}TATAGCGCAAAATGGTACAACAGTTCGCCGAGA : 35579 303 : SerLysIleLeuLeuLysPheMetMetLeuArgCysIleLysProSerValLeuThrAla : 322 !!!:!!! !|||! ! !.!. :!! !||| !!:!:! ||| !!:!!||||||||| ThrGlnThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAla 35578 : ACGCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCG : 35519 323 : GlyGlyLeuTyrIleMetAsnTyrGluAsnTyr : 333 ||||||||| ! !:!!|||! |||!.!!:! GlyGlyLeuIleSerLeuAsnLeuGluThrPhe 35518 : GGAGGACTGATTTCCTTGAATTTGGAGACTTTT : 35484 vulgar: NvOr172PSE 253 333 . KQ414772.1 35856 35483 - 108 M 37 111 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 35484 35856 108 - . gene_id 3 ; sequence NvOr172PSE ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 35744 35856 . - . KQ414772.1 exonerate:protein2genome:local exon 35744 35856 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 35742 35743 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 35611 35743 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 35611 35612 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 35484 35610 . - . KQ414772.1 exonerate:protein2genome:local exon 35484 35610 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 35484 35856 108 - . alignment_id 3 ; Query NvOr172PSE ; Align 35857 254 111 ; Align 35610 292 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr172PSE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 95 -> 148 Target range: 45967 -> 45808 96 : ValTyrLeuTyrAlaAlaGlyPheAlaPheSerGlnValSerMetValProValIleLeu : 115 ||| !:!!||| !!.!! !! !!.!|||||| !.! !!:!::!!||| !!|||||| ValThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeu 45967 : GTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTG : 45910 116 : AspTyrIleTrpProLeuAsnGluSerArgProLysIleLeuIleValHisAlaGluTyr : 135 ||| |||! |||||||||||||||||||||::::!:! ! ! ! ! ||| ! ! ! AspLeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyrCys 45909 : GACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTACTGT : 45850 136 : IleIleAspProLeuGlnTyrTyrPheGluLeuTyrGly : 148 !.!!:!!||| !.!.||||||!:! ! :!! ||| TyrPheAsnProAspAspTyrTyrTyrTyrValValGly 45849 : TACTTCAATCCGGACGACTACTATTATTACGTCGTGGGG : 45809 vulgar: NvOr172PSE 95 148 . KQ414772.1 45967 45808 - 100 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45809 45967 100 - . gene_id 4 ; sequence NvOr172PSE ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45809 45967 . - . KQ414772.1 exonerate:protein2genome:local exon 45809 45967 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45809 45967 100 - . alignment_id 4 ; Query NvOr172PSE ; Align 45968 96 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr166 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 134 -> 200 Target range: 45985 -> 45790 135 : LeuThrIleGlyTyrSerValTyrLeuTyrThrAlaGlyIleAlaPheThrThrLeuPro : 154 |||:!!||| ! !|||||| !:!!|||! !!.!! ! !!.!|||:!!||| !||| LeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThrAlaPro 45985 : TTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCC : 45928 155 : CysLeuIleProAlaValLeuAspLeuIleIleProLeuAsnAspSerArgGlnLysVal : 174 ||||||||| !:!!|||||||||||| !|||||||||!!:||||||! !::::!! ---LeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArgLeu 45927 : ---CTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTG : 45871 175 : LeuCysPheTyrGlyGluTyrPheIleAspGlnArgValTyrTyrTyrGluLeuLeuLeu : 194 ! !..!!:! ! !.! ! ! !!:!.!!:!!! ! !! !||||||||| ! :!!:!! ! TyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValValGly 45870 : TACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTGGGG : 45811 195 : HisThrPheValCysVal : 200 :!!||| !!.!|||:!! TyrThrSerAlaCysIle 45810 : TACACCAGCGCGTGCATA : 45791 vulgar: NvOr166 134 200 . KQ414772.1 45985 45790 - 104 M 20 60 G 1 0 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45791 45985 104 - . gene_id 1 ; sequence NvOr166 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45791 45985 . - . KQ414772.1 exonerate:protein2genome:local exon 45791 45985 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 45791 45985 104 - . alignment_id 1 ; Query NvOr166 ; Align 45986 135 60 ; Align 45926 156 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr169INT Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 99 -> 187 Target range: 26261 -> 25994 100 : PheTyrThrAlaTyrIleHisIleCysMetPhePhePheValTrpSerProAlaLeuGly : 119 ||| ! |||!.!:!!||| :!!||| !.!.|||:!!!! ! !||| !:!!..! PheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSer 26261 : TTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCG : 26204 120 : ProMetIle<->LeuAsnThrPheSerAsnAlaThrTyrLysLysSerIleCysIleAsp : 138 |||!!::!: :!! !! ! ! !|||! !||| !::!! !.!! ! ! ProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrPro 26203 : CCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCA : 26144 139 : AlaGluTyrPheValAspGlnAspGluTyrPheSerTyrIlePheSerHisThrValPhe : 158 ||| ! ||||||||||||:!!|||:!!||| !! !! ||| ! .!!|||! ! !.!! AlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeu 26143 : GCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTT : 26084 159 : ValSerLeuLeuSerAlaSerIleLeuThrAlaPheAspSerThrPheValLeuIleThr : 178 ||| !:!!:!! ! !|||:!!!!! !|||! !|||:!!!.!!:!|||! ! !..! ValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaVal 26083 : GTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTG : 26024 179 : GlnHisGlyIleGlyLeuLeuHisVal : 187 ||||||!.! !||||||||| !:!! GlnHisAlaCysGlyLeuLeuAlaIle 26023 : CAACACGCTTGCGGATTGTTGGCCATT : 25995 vulgar: NvOr169INT 99 187 . LHQN01017803.1 26261 25994 - 114 M 23 69 G 0 3 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25995 26261 114 - . gene_id 1 ; sequence NvOr169INT ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25995 26261 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25995 26261 . - . insertions 3 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25995 26261 114 - . alignment_id 1 ; Query NvOr169INT ; Align 26262 100 69 ; Align 26190 123 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr170 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 145 -> 280 Target range: 26255 -> 25767 146 : SerIleTyrAlaAlaMetSerCysLeuLeuPheValThrLeuProAlaValIleProMet : 165 !!!:!::!! !:!!:!:!!!..! !||||||:!! !|||||| !||| ||| ThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerPro--- 26255 : ACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCG--- : 26198 166 : IleLeuAsnIleIleLeuThrArgAsnGluThrPheLysLysSerLeuCysIleTyrCys : 185 ||||||:!!|||:!!:!! !! !||||||||| !::!! !!!! ! ! ..! IleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAla 26197 : ATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCT : 26141 186 : GluTyrTyrIleAspGlnAspLysTyrPhePheTyrIlePheLeuHisHisIleIleAla : 205 ! |||!:!:!!|||:!!||||||||| !!:!! ||| ! !||| !:!!!.! TyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuVal 26140 : TACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTA : 26081 206 : GlyIleAlaThrIlePheLeuThrIleGlyIleAspThrSerTyrValAsnCysValGln : 225 ! !:!! ! !|||! !:!! ! !!.! !|||.!!!:!|||||| !!..!|||||| ValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGln 26080 : GTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAA : 26021 226 : HisValLeuAlaLeuPheAsnValSer{Ar} >>>> Target Intron 1 >>>> : 235 |||!.!! !!.!|||!!. !:!!:!!{ !} 92 bp HisAlaCysGlyLeuLeuAlaIleAla{Gl}++ ++ 26020 : CACGCTTGCGGATTGTTGGCCATTGCA{GG}gt.........................ag : 25899 236 : {g}TyrArgLeuLysValAlaPheAspThrIleHisHisSerLysLysAsnAspTyrAsn : 254 {!}||||||!!!||| !|||! ! !! !:!! ! ! :!!:!!!!: ! .!. {y}TyrArgPheLysTyrAlaCysTyrGluVal------IleProGluAspGluLysGlu 25898 : {A}TATCGTTTTAAATACGCCTGCTATGAGGTA------ATACCCGAGGATGAGAAGGAA : 25848 255 : LeuLysThrLeuGluAsnAsnValHisSerTyrValValSerSerIleArgLeuHisGln : 274 ! !! !:!! !!..!!.:!!:!!!!! !!||| ! !|||||||||:!!|||||| AlaValLysMetMetArgLysMetTyrArgAsnValCysHisSerIleArgIleHisGln 25847 : GCTGTGAAGATGATGAGAAAGATGTATAGAAATGTTTGTCATTCGATTCGAATACATCAA : 25788 275 : ArgSerIleLysPheVal : 280 |||:!!:!!:!!! ||| ArgAlaLeuGlnSerVal 25787 : CGTGCTTTACAGTcggta : 25768 vulgar: NvOr170 145 280 . LHQN01017803.1 26255 25767 - 126 M 19 57 G 1 0 M 69 207 S 0 2 5 0 2 I 0 88 3 0 2 S 1 1 M 10 30 G 2 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25768 26255 126 - . gene_id 1 ; sequence NvOr170 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 25990 26255 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25990 26255 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local splice5 25988 25989 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 25898 25989 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 25898 25899 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 25768 25897 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25768 25897 . - . insertions 0 ; deletions 2 LHQN01017803.1 exonerate:protein2genome:local similarity 25768 26255 126 - . alignment_id 1 ; Query NvOr170 ; Align 26256 146 57 ; Align 26199 166 207 ; Align 25897 236 30 ; Align 25867 248 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr168 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 154 Query range: 128 -> 222 Target range: 29658 -> 29376 129 : ThrLeuThrIlePheTyrMetGlyTyrMetPheThrAlaCysIleSerPheValThrLeu : 148 |||...::: ...|||:!:!.! ! ! ! !||| ! !.!! !!||| ! ThrPheSerSerLeuTyrValAlaAlaAsnGlyIlePheCysTyrValLeuPheThrAla 29658 : acattttcttctctataTGTCGCAGCAAATGGAATCTTCTGCTACGTTCTCTTCACCGCA : 29601 149 : ProSerAlaValProLeuMetLeuAspLeuIleLeuProLeuAsnGluSerArgGlyVal : 168 !:!! !..!|||! !:!:||||||||||||! !||| !|||||||||||||||||| ValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyVal 29600 : GTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTG : 29541 169 : AsnLeuCysTyrTyrAlaGluTyrPheIleAspGlnGlnLysTyrPheIleTyrLeuLeu : 188 ..!!!! !||| !|||.!.||| !:!!|||:!!:!!:!!:!!!:! !||||||:!! GlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyrTyrTyrLeuMet 29540 : GGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTACTACTATCTGATG : 29481 189 : LeuHisThrPheIleCysValSerPheThrIleLeuIleValThrAlaValAspSerThr : 208 !|||! !.!! ! :!!!!! !!..!.!!!!!:!! !! !:!! !|||!!!! ! GlyHisMetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThrIle 29480 : GGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATC : 29421 209 : PheValSerIleValTyrHisAlaValGlyLeuPheAspIle : 222 !:!:!!!:!|||||| ! |||||| !||||||!!.:!!:!! TyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeu 29420 : TACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTC : 29377 vulgar: NvOr168 128 222 . LHQN01017803.1 29658 29376 - 154 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29377 29658 154 - . gene_id 1 ; sequence NvOr168 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29377 29658 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29377 29658 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 29377 29658 154 - . alignment_id 1 ; Query NvOr168 ; Align 29659 129 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr168 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 143 Query range: 140 -> 229 Target range: 14182 -> 13915 141 : AlaCysIleSerPheValThrLeuProSerAlaValProLeuMetLeuAspLeuIleLeu : 160 !.!|||:!!! !.!. !!..!! ! !! !!!.!..!|||! !!!:||||||:!!:!!||| ValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeu 14182 : GTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTA : 14125 161 : ProLeuAsnGluSerArgGlyValAsnLeuCysTyrTyrAlaGluTyrPheIleAspGln : 180 ||| !||||||||||||! !||| ! ! !||| ||| ! ||||||! !|||:!! ProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGlu 14124 : CCGAAGAACGAGTCACGAGACGTAGCGTACATTTATCCGGCCTATTATTTCACCGACGAG : 14065 181 : GlnLysTyrPheIleTyrLeuLeuLeuHisThrPheIleCysValSerPheThrIleLeu : 200 !!.|||||| !:!:|||:!!:!! !|||! ! ! :!! ! ! ..!.!!! ! HisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyr 14064 : CATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTAC : 14005 201 : IleValThrAlaValAspSerThrPheValSerIleValTyrHisAlaValGlyLeuPhe : 220 :!: !..!||| !|||!!!!:!!:!:!!! !:!!||| ! |||!.! !||||||!!. ValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeu 14004 : GTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTG : 13945 221 : AspIleLeuGluTyrArgMetArgAsn : 229 ! !:!:! !! ::::::|||::: AlaValSerGly***LysIleArgSer 13944 : GCCGTGTCCGGgtaaaaaattcgatcg : 13916 vulgar: NvOr168 140 229 . LHQN01017803.1 14182 13915 - 143 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13916 14182 143 - . gene_id 2 ; sequence NvOr168 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13916 14182 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13916 14182 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13916 14182 143 - . alignment_id 2 ; Query NvOr168 ; Align 14183 141 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr168 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 134 Query range: 144 -> 222 Target range: 26225 -> 25994 145 : PheValThrLeuProSerAlaValProLeuMetLeuAspLeuIleLeuProLeuAsnGlu : 164 |||:!! !||||||! !!.! !|||:!! ||||||:!!:!!:!!|||||||||||| PheMetCysLeuProPheValSerProIle---LeuAspIleLeuMetProLeuAsnGlu 26225 : TTTATGTGCTTGCCGTTCGTGTCGCCGATT---CTGGACATCCTTATGCCGTTGAACGAG : 26171 165 : SerArgGlyValAsnLeuCysTyrTyrAlaGluTyrPheIleAspGlnGlnLysTyrPhe : 184 !!!|||!.! ! !!! !||| ||| ! ||||||:!!|||:!!.!.|||||| ! ThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHis 26170 : ACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCAT : 26111 185 : IleTyrLeuLeuLeuHisThrPheIleCysValSerPheThrIleLeuIleValThrAla : 204 !! :!!:!! !|||! !!:!:!! ||| !.!. !|||! !:!! !! !||| TyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 26110 : TACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 26051 205 : ValAspSerThrPheValSerIleValTyrHisAlaValGlyLeuPheAspIle : 222 !|||:!!!.!!:!|||! ! !||| ! |||||| !||||||!!.! !||| CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 26050 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 25995 vulgar: NvOr168 144 222 . LHQN01017803.1 26225 25994 - 134 M 10 30 G 1 0 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25995 26225 134 - . gene_id 3 ; sequence NvOr168 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25995 26225 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25995 26225 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25995 26225 134 - . alignment_id 3 ; Query NvOr168 ; Align 26226 145 30 ; Align 26196 156 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr168 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 142 -> 213 Target range: 33696 -> 33483 143 : IleSerPheValThrLeuProSerAlaValProLeuMetLeuAspLeuIleLeuProLeu : 162 :!:||| ! !!:!! ! !! !! !:!!|||!!!!!:||||||||||||! !|||||| ValSerValPheSerThrAlaProLeuIleProPheIleLeuAspLeuIleSerProLeu 33696 : GTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTGGACCTAATTTCACCTTTG : 33639 163 : AsnGluSerArgGlyValAsnLeuCysTyrTyrAlaGluTyrPheIleAspGlnGlnLys : 182 |||||||||||| ! ! ! !..!||| ! ||| ! ! !!:!.!!:!!! !.!. ! AsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAsp 33638 : AACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGAC : 33579 183 : TyrPheIleTyrLeuLeuLeuHisThrPheIleCysValSerPheThrIleLeuIleVal : 202 |||!:! !|||:!!:!! !:!!||| ! |||:!!.!!.!..!! !|||:!::!! TyrTyrTyrTyrValValGlyTyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeu 33578 : TACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTT : 33519 203 : ThrAlaValAspSerThrPheValSerIleVal : 213 ..!!.!!.!|||! !! !.!.:!! !:!!||| ValGlyAlaAspIleIleMetIleHisLeuVal 33518 : GTCGGCGCTGACATTATTATGATACATCTTGTA : 33484 vulgar: NvOr168 142 213 . LHQN01017803.1 33696 33483 - 103 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33484 33696 103 - . gene_id 4 ; sequence NvOr168 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33484 33696 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33484 33696 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33484 33696 103 - . alignment_id 4 ; Query NvOr168 ; Align 33697 143 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr167 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 130 -> 219 Target range: 26255 -> 25994 131 : SerValTyrValAsnPheAlaGlyValGlyPheAlaThrLeuProGlyThrLeuProThr : 150 !!!|||:!!:!!:::!!...!!.!!.! !||| ! !|||||| !..!! !||| ThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerPro--- 26255 : ACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCG--- : 26198 151 : IleLeuAsnIleIleAlaProLeuAsnGluSerArgProThrLysValLeuCysPheTyr : 170 ||||||:!!|||:!! !||||||||||||!!!||| .!!::!:!!!!! !!:! IleLeuAspIleLeuMetProLeuAsnGluThrArg---AlaArgLeuPheValTyrPro 26197 : ATTCTGGACATCCTTATGCCGTTGAACGAGACGCGA---GCACGGTTGTTCGTCTATCCA : 26144 171 : AlaGluTyrPheIleAspGlnGluGluTyrTyrTyrGlnLeuLeuPheGlnThrPheIle : 190 ||| ! ||||||:!!|||:!!!!::!!|||:!!||| !:!!:!! !!.! !!:!:!! AlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeu 26143 : GCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTT : 26084 191 : GlyValMetSerThrValPheIleAsnAlaThrValAspThrLeuTyrValIleCysAla : 210 ! !|||:!:! ! !:!!! !:!! !..!.!! !|||.!! !|||||| !..!!.! ValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaVal 26083 : GTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTG : 26024 211 : HisHisSerAspGlyLeuPheAsnIle : 219 !!.|||:!! !||||||!!. !||| GlnHisAlaCysGlyLeuLeuAlaIle 26023 : CAACACGCTTGCGGATTGTTGGCCATT : 25995 vulgar: NvOr167 130 219 . LHQN01017803.1 26255 25994 - 110 M 19 57 G 1 0 M 12 36 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25995 26255 110 - . gene_id 1 ; sequence NvOr167 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25995 26255 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25995 26255 . - . insertions 0 ; deletions 2 LHQN01017803.1 exonerate:protein2genome:local similarity 25995 26255 110 - . alignment_id 1 ; Query NvOr167 ; Align 26256 131 57 ; Align 26199 151 36 ; Align 26163 164 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr176PSE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 74 -> 162 Target range: 33732 -> 33474 75 : LeuValValPheTyrThrIleTyrAlaPheAlaAlaTrpLeuValTyrThrSerIlePro : 94 ||| !:!! ! !:!!:!! ! !!:! !!.! !! !|||!:!:!!!!! ||| LeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThrAlaPro 33732 : TTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCC : 33675 95 : PheIleProPheIleLeuAspLeuValHisProLeuGluAsnGlyThrArgProLeuPhe : 114 .!!|||||||||||||||||||||:!! |||||| |||! !:!!||||||! !!!. LeuIleProPheIleLeuAspLeuIleSerProLeu---AsnGluSerArgProArgLeu 33674 : CTCATACCGTTCATCCTGGACCTAATTTCACCTTTG---AACGAGTCTCGTCCACGTTTG : 33618 115 : MetProPheTyrAlaAspTyrValPhePheAspGlnAsnAspTyrHisTyrSerAlaCys : 134 !!!:! ! ||| ||| !!:!|||:!!! !:!!||||||:!!|||! !!.! TyrAlaTyrLysAla---TyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValVal 33617 : TACGCCTATAAAGCC---TACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTG : 33561 135 : GlyHisValAlaValIleTyrPheThrSerPheLeuLeuTyrSerGlyValAspGlyIle : 154 |||:!!..!::!!.! ! ! !:!! |||:!! ! !|||!.!||| !||| GlyTyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAlaAspIleIle 33560 : GGGTACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATT : 33501 155 : TyrValLeuThrValLysHisThr : 162 :!!! ! !|||:::! ||| MetIleHisLeuValArgProThr 33500 : ATGATACATCTTGTACGTCCAACC : 33475 vulgar: NvOr176PSE 74 162 . LHQN01017803.1 33732 33474 - 102 M 32 96 G 1 0 M 12 36 G 1 0 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33475 33732 102 - . gene_id 1 ; sequence NvOr176PSE ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33475 33732 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33475 33732 . - . insertions 0 ; deletions 2 LHQN01017803.1 exonerate:protein2genome:local similarity 33475 33732 102 - . alignment_id 1 ; Query NvOr176PSE ; Align 33733 75 96 ; Align 33637 108 36 ; Align 33601 121 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr172PSE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 266 -> 333 Target range: 12783 -> 12520 267 : MetIleHisLeuLeuTyrLeuSerTyrProGlyGlnLysValLeuAspTyrSerSerSer : 286 :!!:!!|||:!!|||||||||!!! !! !|||||| |||:!!||| !:!..!..! LeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAspAlaAsnGluGlu 12783 : TTGGTACACATACTTTACCTAACTCTTCAAGGACAATTCGTGATCGACGCGAACGAGGAA : 12726 287 : IleCysGlnGlu{Se} >>>> Target Intron 1 >>>> {r}TyrThrAsnGlu : 295 |||! !:!!..!{! } 62 bp {!}|||!.! ! ! IlePheGluSer{Il}++ ++{e}TyrAsnAlaLeu 12725 : ATCTTCGAATCG{AT}gt.........................ag{A}TACAACGCTTTG : 12637 296 : TrpTyrLeuIleSerLysLysSerLysIleLeuLeuLysPheMetMetLeuArgCysIle : 315 |||||| !! !..!|||!:!!!!:!! |||!!! !!!. :!: !!.!|||:!! TrpTyrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeuArgAsnCysLeu 12636 : TGGTATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCATTAAGAAATTGTCTA : 12577 316 : LysProSerValLeuThrAlaGlyGlyLeuTyrIleMetAsnTyrGluAsnTyr : 333 ... !! !! !:!!||||||||||||||| !! !||||||! :!!!:!!:! SerAlaProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGlnSerPhe 12576 : TCTGCTCCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAAAGTTTC : 12521 vulgar: NvOr172PSE 266 333 . LHQN01017803.1 12783 12520 - 110 M 24 72 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 12521 12783 110 - . gene_id 1 ; sequence NvOr172PSE ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 12710 12783 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12710 12783 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 12708 12709 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 12648 12709 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 12648 12649 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 12521 12647 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12521 12647 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 12521 12783 110 - . alignment_id 1 ; Query NvOr172PSE ; Align 12784 267 72 ; Align 12647 292 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr172PSE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 253 -> 333 Target range: 28903 -> 28530 254 : MetGlnPheIleArgLeuAlaMetIleGluValGlyValMetIleHisLeuLeuTyrLeu : 273 |||:!!||| !!:!! !..! .!! !|||! ! !:!!:!!|||||||||!:!||| MetGluPheTyrLysTyrCysAlaPheLeuValValGlnLeuValHisLeuLeuPheLeu 28903 : ATGGAGTTCTACAAGTATTGCGCTTTCTTGGTGGTGCAACTGGTTCATTTGCTTTTCCTT : 28846 274 : SerTyrProGlyGlnLysValLeuAspTyrSerSerSerIleCysGlnGlu{Se} >>> : 291 ||| !! !|||!!. |||:!! !! !..!! !! !! !.!..!.{! } SerIleGlnGlyHisPheValIleLeuSerHisAspMetThrTyrAspAsn{Il}++ 28845 : TCTATCCAGGGACACTTTGTTATACTCTCGCATGACATGACTTACGACAAC{AT}gt... : 28788 292 : > Target Intron 1 >>>> {r}TyrThrAsnGluTrpTyrLeuIleSerLysLys : 302 133 bp {!}|||!:! :!!|||||| !! !||| !!:! ++{e}TyrSerAlaLysTrpTyrAsnSerSerProArg 28787 : ......................ag{A}TATAGCGCAAAATGGTACAACAGTTCGCCGAGA : 28626 303 : SerLysIleLeuLeuLysPheMetMetLeuArgCysIleLysProSerValLeuThrAla : 322 !!!:!!! !|||! ! !.!. :!! !||| !!:!:! ||| !!:!!||||||||| ThrGlnThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAla 28625 : ACGCAAACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCG : 28566 323 : GlyGlyLeuTyrIleMetAsnTyrGluAsnTyr : 333 ||||||||| ! !:!!|||! |||!.!!:! GlyGlyLeuIleSerLeuAsnLeuGluThrPhe 28565 : GGAGGACTGATTTCCTTGAATTTGGAGACTTTT : 28531 vulgar: NvOr172PSE 253 333 . LHQN01017803.1 28903 28530 - 108 M 37 111 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 28531 28903 108 - . gene_id 2 ; sequence NvOr172PSE ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 28791 28903 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28791 28903 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 28789 28790 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 28658 28790 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 28658 28659 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 28531 28657 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28531 28657 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 28531 28903 108 - . alignment_id 2 ; Query NvOr172PSE ; Align 28904 254 111 ; Align 28657 292 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr172PSE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 95 -> 148 Target range: 33714 -> 33555 96 : ValTyrLeuTyrAlaAlaGlyPheAlaPheSerGlnValSerMetValProValIleLeu : 115 ||| !:!!||| !!.!! !! !!.!|||||| !.! !!:!::!!||| !!|||||| ValThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeu 33714 : GTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTG : 33657 116 : AspTyrIleTrpProLeuAsnGluSerArgProLysIleLeuIleValHisAlaGluTyr : 135 ||| |||! |||||||||||||||||||||::::!:! ! ! ! ! ||| ! ! ! AspLeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyrCys 33656 : GACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTACTGT : 33597 136 : IleIleAspProLeuGlnTyrTyrPheGluLeuTyrGly : 148 !.!!:!!||| !.!.||||||!:! ! :!! ||| TyrPheAsnProAspAspTyrTyrTyrTyrValValGly 33596 : TACTTCAATCCGGACGACTACTATTATTACGTCGTGGGG : 33556 vulgar: NvOr172PSE 95 148 . LHQN01017803.1 33714 33555 - 100 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33556 33714 100 - . gene_id 3 ; sequence NvOr172PSE ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33556 33714 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33556 33714 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33556 33714 100 - . alignment_id 3 ; Query NvOr172PSE ; Align 33715 96 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr166 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 134 -> 200 Target range: 33732 -> 33537 135 : LeuThrIleGlyTyrSerValTyrLeuTyrThrAlaGlyIleAlaPheThrThrLeuPro : 154 |||:!!||| ! !|||||| !:!!|||! !!.!! ! !!.!|||:!!||| !||| LeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSerThrAlaPro 33732 : TTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCC : 33675 155 : CysLeuIleProAlaValLeuAspLeuIleIleProLeuAsnAspSerArgGlnLysVal : 174 ||||||||| !:!!|||||||||||| !|||||||||!!:||||||! !::::!! ---LeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArgLeu 33674 : ---CTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTG : 33618 175 : LeuCysPheTyrGlyGluTyrPheIleAspGlnArgValTyrTyrTyrGluLeuLeuLeu : 194 ! !..!!:! ! !.! ! ! !!:!.!!:!!! ! !! !||||||||| ! :!!:!! ! TyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValValGly 33617 : TACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTGGGG : 33558 195 : HisThrPheValCysVal : 200 :!!||| !!.!|||:!! TyrThrSerAlaCysIle 33557 : TACACCAGCGCGTGCATA : 33538 vulgar: NvOr166 134 200 . LHQN01017803.1 33732 33537 - 104 M 20 60 G 1 0 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33538 33732 104 - . gene_id 1 ; sequence NvOr166 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33538 33732 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33538 33732 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 33538 33732 104 - . alignment_id 1 ; Query NvOr166 ; Align 33733 135 60 ; Align 33673 156 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 213 Query range: 60 -> 252 Target range: 26544 -> 25883 61 : ThrValThrPheGluAsnThrValSerValMetPheAlaIleGlyCysCysAlaLysTyr : 80 |||:!!:!!! !||| ! !! !|||...!:!:!! !..!||| ! !!!.! ThrIleSer***ThrAsnGlnArg***ValGlnTyrSerProSerCysLeuLeuAsnSer 26544 : ACTATTTCATAAACGAATCAGAGGTAAGTGCAATACTCTCCATCGTGTCTTCTTAACTCA : 26487 81 : ValValThrTyrThrSerSerGlnArgLeuValArgLeuPheLysGlnIleAlaSerAsp : 100 :!! !:!! .!!|||!.! !:!||| ! !|||.!! !:!!||| !..!||| IleLysSerProAlaSerLysPheGlnLeuLysTyrLeuLeuGlyLysIleTyrGluAsp 26486 : ATCAAATCACCAGCTTCGAAATTTCAGCTGAAATATCTTCTTGGAAAGATCTACGAAGAC : 26427 101 : TrpGlnArgIleThrAspThrThrGluLeuSerIleLeuThrLysTyrSerGluLysGly : 120 |||::! !!!:|||... ! !|||! !!.!|||:!!|||||||||:!!||||||||| TrpArgAlaMetThrSerGluAspGluTyrLysIleMetThrLysTyrAlaGluLysGly 26426 : TGGAGAGCCATGACGTCGGAGGATGAGTACAAGATCATGACGAAATACGCGGAGAAAGGG : 26367 121 : LysPheLeuIleThrPheTyrGln{V} >>>> Target Intron 1 >>>> {al} : 129 ! ||| !:!!! !.!!||| {:} 88 bp {!!} IlePheSerValIleLeuTyrIle{L}++ ++{eu} 26366 : ATTTTCAGTGTCATACTCTATATT{C}gt.........................ag{TG} : 26251 130 : TyrValTrpPheGlyTrpThrValTyrThrLeuMetProPheIleProTyrPheLeuAsp : 149 :!!:!!! !!!. !! .!!:!!!:!! !! !:!!||||||:!: !! .!!|||||| HisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAsp 26250 : CATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGAC : 26192 150 : LysValSerProLeuAsnGluSerArgProLeuLeuMetProPheTyrAlaAspTyrIle : 169 ! :!!! !||||||||||||!!!||| !!! !|||.!. !!:! ||| !!|||.!! IleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPhe 26191 : ATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTC : 26132 170 : ValPheAspGlnAlaAspTyrHisTyrThrSerCysPheHisIleAlaPheValTyrIle : 189 ||| |||:!!! ! ! ||||||||| !! ! |||!!: !.!!||| :!! Val---AspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValVal 26131 : GTC---GACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTA : 26075 190 : SerSerAlaLeuLeuPheCysGlyValAspAlaThrPheValMetSerValGlnHisThr : 209 ! ! ! !! !:!!||||||!.! !||||||!.!!:!||| :!!|||||||||.!! MetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAla 26074 : ATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCT : 26015 210 : CysGlyLeuPheAlaIleIleCysHisArgLeuGluGlyGluLysIleLysLysGluSer : 229 |||||||||!!.|||||| ! ! ! !:!!:!!|||:!! !!!::!!!!.! ! ! CysGlyLeuLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGluAsnGlyPhe 26014 : TGCGGATTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAATGGTTTT : 25955 230 : GluTyrAlaGlnAsnValMetLysThrLeuSerGluGluGluLeuArgGluValValIle : 249 ||| !.!. !||| !|||:!!|||.!..!.! !! ! !|||! !||| LeuTyrArgAsnPheValGlyPheCysLeuAlaGluAsnAsnCysLeuLeuValAspIle 25954 : CTTTATAGAAATTTCGTTGGCTTTTGTTTAGCTGAAAACAATTGTCTGTTGGTAGATATC : 25895 250 : PheHisAsn : 252 !! ||| ValLeuAsn 25894 : GTTTTAAAT : 25884 vulgar: NvOr175 60 252 . LHQN01017803.1 26544 25883 - 213 M 68 204 S 0 1 5 0 2 I 0 84 3 0 2 S 1 2 M 41 123 G 1 0 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25884 26544 213 - . gene_id 1 ; sequence NvOr175 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 26340 26544 . - . LHQN01017803.1 exonerate:protein2genome:local exon 26340 26544 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 26338 26339 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 26252 26339 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 26252 26253 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 25884 26251 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25884 26251 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25884 26544 213 - . alignment_id 1 ; Query NvOr175 ; Align 26545 61 204 ; Align 26250 130 123 ; Align 26127 172 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 160 Query range: 295 -> 391 Target range: 12819 -> 12391 296 : LysPheValArgIleMetAlaPhePheValGlyLeuIleIleHisLeuLeuTyrLeuAsn : 315 :!!|||!.!!:! ! .!!|||.!!||| !! !:!::!!|||:!!|||||||||!.! GluPheAlaLysAspCysThrPheIleValIleGlnLeuValHisIleLeuTyrLeuThr 12819 : GAGTTTGCCAAGGATTGCACATTTATCGTGATTCAATTGGTACACATACTTTACCTAACT : 12762 316 : TrpValGlyGlnLysIleIleAspSerSerGluAspValPheLeuAla{Al} >>>> T : 332 !|||||| :!:||||||:!!!:!|||!!::!!||| !:!!{ } LeuGlnGlyGlnPheValIleAspAlaAsnGluGluIlePheGluSer{Il}++ 12761 : CTTCAAGGACAATTCGTGATCGACGCGAACGAGGAAATCTTCGAATCG{AT}gt...... : 12707 333 : arget Intron 1 >>>> {a}TyrCysSerLysTrpTyrValIleSerThrSerAla : 344 62 bp {!}||| !:!! !|||||| !! !..!! !!!!.!! ++{e}TyrAsnAlaLeuTrpTyrAsnSerAspLysArgThr 12706 : ...................ag{A}TACAACGCTTTGTGGTATAACAGCGACAAGAGAACG : 12613 345 : ArgAlaPheIleLysIleIleMetValArgAlaLeuGluProCysArgLeuThrAlaGly : 364 !:!:!!!!..!! !:!! !:!: !!.!..!|||... !! !!:!:!!||||||||| GlnSerLeuPheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGly 12612 : CAATCGTTGTTTGTATTAGCATTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGT : 12553 365 : GlyLeuSerThrLeuCysMetGluSerPheGlyIle >>>> Target Intron 2 > : 377 ||||||! !|||:!! !:!!:!!||||||..! 78 bp GlyLeuIleThrMetAsnLeuGlnSerPheSerGlu++ 12552 : GGACTAATTACAATGAACTTGCAAAGTTTCTCAGAGgt...................... : 12512 378 : >>> LeuIleLysThrSerValSerTyrPheThrValPheLeuSerVal : 391 :!!:!!||||||||||||||||||!:!! !|||.!. !|||||| ++IleValLysThrSerValSerTyrTyrMetValLeuLysSerVal 12511 : ...agATTGTAAAGACGTCTGTCTCGTACTACATGGTACTGAAATCCGTA : 12392 vulgar: NvOr175 295 391 . LHQN01017803.1 12819 12391 - 160 M 36 108 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 44 132 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 12392 12819 160 - . gene_id 2 ; sequence NvOr175 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 12710 12819 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12710 12819 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 12708 12709 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 12648 12709 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 12648 12649 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 12515 12647 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12515 12647 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 12513 12514 . - . intron_id 2 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 12437 12514 . - . intron_id 2 LHQN01017803.1 exonerate:protein2genome:local splice3 12437 12438 . - . intron_id 1 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 12392 12436 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12392 12436 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 12392 12819 160 - . alignment_id 2 ; Query NvOr175 ; Align 12820 296 108 ; Align 12647 333 132 ; Align 12437 377 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 127 -> 209 Target range: 33717 -> 33474 128 : GlnValTyrValTrpPheGlyTrpThrValTyrThrLeuMetProPheIleProTyrPhe : 147 ..!||| !:!!!::.!!||| !:!!|||!:!:!! ! !|||.!!||||||!:!.!! SerValThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIle 33717 : TCAGTAACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATC : 33660 148 : LeuAspLysValSerProLeuAsnGluSerArgProLeuLeuMetProPheTyrAlaAsp : 167 |||||| !:!!||||||||||||||||||||||||! !||| !!!:! ! ||| LeuAspLeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAla--- 33659 : CTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCC--- : 33600 168 : TyrIleValPheAspGlnAlaAspTyrHisTyrThrSerCysPheHisIleAlaPheVal : 187 ||| ! !|||:!!! !! !||||||:!!||| ! ! :!!! !::! ! TyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValValGlyTyrThrSerAlaCys 33599 : TACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTGGGGTACACCAGCGCGTGC : 33543 188 : TyrIleSerSerAlaLeuLeuPheCysGlyValAspAlaThrPheValMetSerValGln : 207 !! !:!!!.!|||:!!.!! !|||!.!||| !! !.!.:!! !|||!:: IleGlyMetAlaGlyLeuValLeuValGlyAlaAspIleIleMetIleHisLeuValArg 33542 : ATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATTATTATGATACATCTTGTACGT : 33483 208 : HisThr : 209 ! ||| ProThr 33482 : CCAACC : 33475 vulgar: NvOr175 127 209 . LHQN01017803.1 33717 33474 - 116 M 39 117 G 1 0 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33475 33717 116 - . gene_id 3 ; sequence NvOr175 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33475 33717 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33475 33717 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 33475 33717 116 - . alignment_id 3 ; Query NvOr175 ; Align 33718 128 117 ; Align 33601 168 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 325 -> 390 Target range: 28677 -> 28243 326 : GluAspValPheLeuAlaAlaTyrCysSerLysTrpTyrValIleSerThrSerAlaArg : 345 :!!!!::!!|||:!! ! !||| !!:!!||||||||| !! !||| !!!!!.!!!:! GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 28677 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 28620 346 : AlaPheIleLysIleIleMetValArgAlaLeuGluProCysArgLeuThrAlaGlyGly : 365 .!!.!. ! !:!! !:!! !|||::!||| ||| !||||||||||||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 28619 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 28560 366 : LeuSerThrLeuCysMetGluSerPheGlyIle >>>> Target Intron 1 >>>> : 377 |||! !:!!||| !:!!|||!!!|||!.! 239 bp LeuIleSerLeuAsnLeuGluThrPheAlaGlu++ 28559 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGaggt......................... : 28522 378 : LeuIleLysThrSerValSerTyrPheThrValPheLeuSer : 390 :!!:!!|||.!!|||||||||:::|||||||||.!. !||| ++IleLeuLysAlaSerValSerPhePheThrValMetLysSer 28521 : agaTCTTAAAAGCAtccgtttcctttttcacgGTAATGAAATCG : 28244 vulgar: NvOr175 325 390 . LHQN01017803.1 28677 28243 - 105 M 51 153 5 0 2 I 0 235 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 28244 28677 105 - . gene_id 4 ; sequence NvOr175 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 28525 28677 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28525 28677 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 28523 28524 . - . intron_id 1 ; splice_site "gt" LHQN01017803.1 exonerate:protein2genome:local intron 28286 28524 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 28286 28287 . - . intron_id 0 ; splice_site "ag" LHQN01017803.1 exonerate:protein2genome:local cds 28244 28285 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28244 28285 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 28244 28677 105 - . alignment_id 4 ; Query NvOr175 ; Align 28678 326 153 ; Align 28286 377 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 332 -> 390 Target range: 22422 -> 22171 333 : TyrCysSerLysTrpTyrValIleSerThrSerAlaArgAlaPheIleLysIleIleMet : 352 ||| |||! !|||||| ! !||| !!.!.!!!:!|||!!. !! !:!! :!: TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeu 22422 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTA : 22365 353 : ValArgAlaLeuGluProCysArgLeuThrAlaGlyGlyLeuSerThrLeuCysMetGlu : 372 !!!!::!|||.!.||| ! !|||||||||||||||!!!! !|||||| !:!::!! ArgSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLys 22364 : CGGAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAG : 22305 373 : SerPheGlyIle >>>> Target Intron 1 >>>> LeuIleLysThrSerValS : 383 !!!|||..! 77 bp :!!||||||:!!||||||| ThrPheSerGlu++ ++IleIleLysSerSerValS 22304 : ACCTTCTCAGAGgt.........................agATTATAAAATCATCCGTGT : 22195 384 : erTyrPheThrValPheLeuSer : 390 |||||!:!||||||.!.! !||| erTyrTyrThrValMetGlnSer 22194 : CTTACTATACGGTGATGCAATCG : 22172 vulgar: NvOr175 332 390 . LHQN01017803.1 22422 22171 - 103 M 44 132 5 0 2 I 0 73 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 22172 22422 103 - . gene_id 5 ; sequence NvOr175 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 22291 22422 . - . LHQN01017803.1 exonerate:protein2genome:local exon 22291 22422 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 22289 22290 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 22214 22290 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 22214 22215 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 22172 22213 . - . LHQN01017803.1 exonerate:protein2genome:local exon 22172 22213 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 22172 22422 103 - . alignment_id 5 ; Query NvOr175 ; Align 22423 333 132 ; Align 22214 377 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 158 -> 215 Target range: 18363 -> 18192 159 : ProLeuLeuMetProPheTyrAlaAspTyrIleValPheAspGlnAlaAspTyrHisTyr : 178 ||| !||| ! !! !!! ||| ! !! !!|||:!!!.!!!:|||:!!||| ProSerLeuProValValValProGlyTyrTyrPheValAspGluValGluTyrTyrTyr 18363 : CCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTAT : 18306 179 : ThrSerCysPheHisIleAlaPheValTyrIleSerSerAlaLeuLeuPheCysGlyVal : 198 !! ! .!!||| !.!!! !..! !:!:! ! !!.!:!!:!!!:!|||!.! ! TyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCys 18305 : TACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 18246 199 : AspAlaThrPheValMetSerValGlnHisThrCysGlyLeuPheAlaIle : 215 |||.!!!:!!:!:!!:!: !|||||||||||||||||||||||||||:!: AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaVal 18245 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTG : 18193 vulgar: NvOr175 158 215 . LHQN01017803.1 18363 18192 - 102 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18193 18363 102 - . gene_id 6 ; sequence NvOr175 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18193 18363 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18193 18363 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18193 18363 102 - . alignment_id 6 ; Query NvOr175 ; Align 18364 159 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 323 -> 387 Target range: 17190 -> 16915 324 : SerSerGluAspValPheLeuAlaAlaTyrCysSerLysTrpTyrValIleSerThrSer : 343 !!! !!!!:||| ! !:!! !||| ||| !||||||..!! !|||:!!!.! ThrArgAspAspAsnGluThrSerArgTyrGluSerLeuTrpTyrThrSerSerSerLys 17190 : ACACGCGATGATAATGAAACTTCCAGATACGAATCATTATGGTACACAAGTTCTTCGAAA : 17133 344 : AlaArgAlaPheIleLysIleIleMetValArgAlaLeuGluProCysArgLeuThrAla : 363 .!!!:!|||!!. ! !:!! :!: !||| !||| !||| ! !!||||||||| ThrGlnAlaLeuTyrValValAlaLeuArgArgAsnLeuThrProThrCysLeuThrAla 17132 : ACACAAGCATTATACGTGGTAGCGTTACGAAGAAACCTAACACCTACCTGTTTAACGGCT : 17073 364 : GlyGlyLeuSerThrLeuCysMetGluSerPheGlyIle >>>> Target Intron : 377 ||||||||| ! !||| !|||:!!||||||!.! 83 bp GlyGlyLeuValGlnLeuAsnMetGlnSerPheAlaGlu++ 17072 : GGCGGTTTAGTGCAACTGAACATGCAAAGCTTCGCAGAGgt................... : 17029 378 : 1 >>>> LeuIleLysThrSerValSerTyrPheThrVal : 387 :!!:!!|||! !||||||||||||!:!|||||| ++ValValLysMetSerValSerTyrTyrThrVal 17028 : ......agGTGGTAAAAATGTCCGTTTCCTATTATACGGTG : 16916 vulgar: NvOr175 323 387 . LHQN01017803.1 17190 16915 - 102 M 53 159 5 0 2 I 0 79 3 0 2 M 11 33 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 16916 17190 102 - . gene_id 7 ; sequence NvOr175 ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 17032 17190 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17032 17190 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 17030 17031 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 16949 17031 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 16949 16950 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 16916 16948 . - . LHQN01017803.1 exonerate:protein2genome:local exon 16916 16948 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 16916 17190 102 - . alignment_id 7 ; Query NvOr175 ; Align 17191 324 159 ; Align 16949 377 33 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr164PSE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 7 -> 75 Target range: 26231 -> 26030 8 : AlaAlaTyrAlaSerLeuProSerPheGlyProValIleMetAsnIleLeuPheProLeu : 27 ||| !!:! !!!!||||||! ! ! ..!||| |||:!!:!!||||||.!.|||||| AlaLeuPheMetCysLeuProPheValSerPro---IleLeuAspIleLeuMetProLeu 26231 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCG---ATTCTGGACATCCTTATGCCGTTG : 26177 28 : AsnGluThrArgArgLysGlnLeuProAlaProAlaGluTyrPheValAspGluGluLys : 47 |||||||||||| !::! !!!! ! !|||||| ! |||||||||||||||!!:||| AsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLys 26176 : AACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAA : 26117 48 : TyrLeuTyrIleLeuPheLeuHisGlyMetIleCysCysIlePheValProIleLeuTyr : 67 |||! !|||:!::!! ! !||| ! :!! :!!.!.:!! ! !:!!!:! TyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPhe 26116 : TATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTC : 26057 68 : ValThrIleAspSerMetHisVal : 75 !.!! !|||:!!! :!!||| CysAlaCysAspAlaAsnTyrVal 26056 : TGCGCCTGCGATGCCAATTACGTG : 26031 vulgar: NvOr164PSE 7 75 . LHQN01017803.1 26231 26030 - 113 M 11 33 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 26031 26231 113 - . gene_id 1 ; sequence NvOr164PSE ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 26031 26231 . - . LHQN01017803.1 exonerate:protein2genome:local exon 26031 26231 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 26031 26231 113 - . alignment_id 1 ; Query NvOr164PSE ; Align 26232 8 33 ; Align 26199 20 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr174PSE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 134 Query range: 119 -> 214 Target range: 26273 -> 25994 120 : PheAlaSerLeuPheTyrThrPheTyrValPheTrpAlaTrpAlaThrTyrAsnMetMet : 139 ||| !! ! !||| ! ||| ! :!!:!!! ! ..! ||| !!:!! :!! PheTyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeu 26273 : TTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTG : 26216 140 : ProPheLeuProProIleLeuAspIleValLeuProLeuProAsnGlySerHisProLeu : 159 ||||||:!! !!|||||||||||||||:!!:!!|||||| !.!. ! !! ! !||| ProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeu 26215 : CCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTG : 26156 160 : LeuLeuProPheTyrAlaAsnTyrIlePhePheGluGlnLeuAspTyrHisTyrGluThr : 179 !!!:!! ||| !! !||| !||| !!!!::!! ! ! ||||||||| !! ! PheVal------TyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIle 26155 : TTCGTC------TATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATC : 26102 180 : AlaLeuHisAlaPhePheValTyrPhePheAlaThrSerLeuPheAlaGlyIleAspThr : 199 !.! !||| !!:!.!!||| ! .!. !! !|||:!!|||..!!.! !|||.!! ValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 26101 : GTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 26042 200 : IleTyrValSerThrValLysHisThrCysGlyLeuPheAlaIle : 214 ! !||||||! !.!!|||:!!|||.!!|||||||||!!.|||||| AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 26041 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 25995 vulgar: NvOr174PSE 119 214 . LHQN01017803.1 26273 25994 - 134 M 42 126 G 2 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25995 26273 134 - . gene_id 1 ; sequence NvOr174PSE ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25995 26273 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25995 26273 . - . insertions 0 ; deletions 2 LHQN01017803.1 exonerate:protein2genome:local similarity 25995 26273 134 - . alignment_id 1 ; Query NvOr174PSE ; Align 26274 120 126 ; Align 26148 164 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr174PSE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 157 -> 223 Target range: 18363 -> 18165 158 : ProLeuLeuLeuProPheTyrAlaAsnTyrIlePhePheGluGlnLeuAspTyrHisTyr : 177 ||| !|||! ! ! !! !!...||| !||| !!!!::!!:!!!!:|||:!!||| ProSerLeuProValValValProGlyTyrTyrPheValAspGluValGluTyrTyrTyr 18363 : CCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTAT : 18306 178 : GluThrAlaLeuHisAlaPhePheValTyrPhePheAlaThrSerLeuPheAlaGlyIle : 197 ! ! ! !||||||!.! ! !..! !!!..!!!.!..! !:!!!:!..!!.! ! TyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCys 18305 : TACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 18246 198 : AspThrIleTyrValSerThrValLysHisThrCysGlyLeuPheAlaIleIleZedLeu : 217 ||||||! !|||:!! ! !|||:!!|||||||||||||||||||||:!: ! ! ! AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly*** 18245 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGGTGA : 18186 218 : GluThrLeuAlaLysThr : 223 |||!.!||| ||| GluAsnLeuArgAspThr 18185 : GAAAACTTGAGagataca : 18166 vulgar: NvOr174PSE 157 223 . LHQN01017803.1 18363 18165 - 108 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18166 18363 108 - . gene_id 2 ; sequence NvOr174PSE ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18166 18363 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18166 18363 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18166 18363 108 - . alignment_id 2 ; Query NvOr174PSE ; Align 18364 158 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr173 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 136 Query range: 121 -> 216 Target range: 26273 -> 25994 122 : TyrLeuValLeuPheTyrThrValTyrValPheLeuAlaTrpValThrCysAsnPheVal : 141 !:!! ! !! !||| ! ||||||:!!:!!! |||..! !.! !! !! ! !:!! PheTyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeu 26273 : TTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTG : 26216 142 : ProPheIleProProLeuLeuAspIleLeuLeuProLeuGluAsnGlyThrHisAspLeu : 161 ||||||:!: !!|||:!!||||||||||||:!!|||||| |||! !|||!..! ! ! ProPheValSerProIleLeuAspIleLeuMetProLeu---AsnGluThrArgAlaArg 26215 : CCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTG---AACGAGACGCGAGCACGG : 26159 162 : ValTyrProPheTyrAlaAspTyrValPhePheLysGlnThrAspTyrHisTyrGluSer : 181 :!!!:! !!||| !!! !||| !||| !! ! :!! ! ! ||||||||| !! ! LeuPhe---ValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIle 26158 : TTGTTC---GTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATC : 26102 182 : CysLeuHisValPhePheValTyrPheGlyThrThrSerLeuPheAlaGlyMetAspThr : 201 !|||:!!!:!.!!||| ! ! !! !|||:!!|||..!!.! |||.!! ValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 26101 : GTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 26042 202 : IleTyrValAlaThrValLysHisSerCysGlyLeuPheAlaIle : 216 ! !|||||| !.!!|||:!!|||:!!|||||||||!!.|||||| AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 26041 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 25995 vulgar: NvOr173 121 216 . LHQN01017803.1 26273 25994 - 136 M 33 99 G 1 0 M 8 24 G 1 0 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25995 26273 136 - . gene_id 1 ; sequence NvOr173 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25995 26273 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25995 26273 . - . insertions 0 ; deletions 2 LHQN01017803.1 exonerate:protein2genome:local similarity 25995 26273 136 - . alignment_id 1 ; Query NvOr173 ; Align 26274 122 99 ; Align 26175 156 24 ; Align 26151 165 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr174PSE Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 319 -> 382 Target range: 34375 -> 34564 320 : IleAspSerSerGluLysIlePheAsnSerAlaTyrSerSerGluTrpTyrLeuIleSer : 339 ||| !..!|||..!:!!!!: !||||||||||||..!|||.!.|||||| !:!!||| IlePheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSer 34376 : ATATTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCA : 34433 340 : ThrAsnAlaArgLysLeuThrLysValIleMetIleArgSerLeuTyrProCysHisLeu : 359 !! ! ! !|||! ! ! ! !!|||||| !|||!!! ! !||| ! !||| ProProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeu 34434 : CCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTG : 34493 360 : ThrAlaGlyLysIleThrSerLeuSerMetGluThrPheGlySerLeuMetLysThrSer : 379 ||||||||||||.!!!:!!!!!!!|||||||||! !|||.!!!!!:!!! ::: ThrAlaGlyLysPheSerThrPheSerMetGluMetPheSerThrValSerProIleAsn 34494 : ACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTGTAAGCccgataaat : 34553 380 : MetSerTyr : 382 ::: ::: IleHisPhe 34554 : attcatttt : 34564 vulgar: NvOr174PSE 319 382 . KQ414804.1 34375 34564 + 107 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34376 34564 107 + . gene_id 1 ; sequence NvOr174PSE ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 34376 34564 . + . KQ414804.1 exonerate:protein2genome:local exon 34376 34564 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34376 34564 107 + . alignment_id 1 ; Query NvOr174PSE ; Align 34376 320 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr164PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 19 -> 76 Target range: 482031 -> 482202 20 : IleMetAsnIleLeuPheProLeuAsnGluThrArgArgLysGlnLeuProAlaProA : 39 :!!:!::!!:!!:!! !!||||||||||||||||||! ! ! |||!!!|||!.! !! ValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerM 482032 : GTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAA : 482089 40 : laGluTyrPheValAspGluGluLysTyrLeuTyrIleLeuPheLeuHisGlyMetIl : 58 !|||||||||:!!|||:!!:!!||||||! ! !.!!:!! !!!||| ! !.! etGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPh 482090 : TGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTT : 482146 59 : eCysCysIlePheValProIleLeuTyrValThrIleAspSerMetHisValLeu : 76 !! !! !:!! ! ||| !!! :!! !||| !|||!!:!!!:!! !|||:!! eSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMet 482147 : TTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATG : 482202 vulgar: NvOr164PSE 19 76 . KQ414815.1 482031 482202 + 110 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482032 482202 110 + . gene_id 1 ; sequence NvOr164PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482032 482202 . + . KQ414815.1 exonerate:protein2genome:local exon 482032 482202 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482032 482202 110 + . alignment_id 1 ; Query NvOr164PSE ; Align 482032 20 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr164PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 17 -> 73 Target range: 457201 -> 457369 18 : ProValIleMetAsnIleLeuPheProLeuAsnGluThrArgArgLysGlnLeuProA : 37 |||:!!:!!:!::!!|||:!! !!||||||||||||:!!|||! ! :!!||| ! ProIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrL 457202 : CCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACC : 457259 38 : laProAlaGluTyrPheValAspGluGluLysTyrLeuTyrIleLeuPheLeuHisGl : 56 ! !!|||||||||||||||||| !:!!||||||:!!:!! !:!!.!! !||| euThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIl 457260 : TTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACAT : 457316 57 : yMetIleCysCysIlePheValProIleLeuTyrValThrIleAspSerMet : 73 !!!:! ||| :!:.!!!.! !!! ! !! ..!.!!! !!!:|||:!: eIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeu 457317 : TATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTA : 457369 vulgar: NvOr164PSE 17 73 . KQ414815.1 457201 457369 + 105 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457202 457369 105 + . gene_id 2 ; sequence NvOr164PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457202 457369 . + . KQ414815.1 exonerate:protein2genome:local exon 457202 457369 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457202 457369 105 + . alignment_id 2 ; Query NvOr164PSE ; Align 457202 18 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr168 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 145 -> 222 Target range: 457180 -> 457411 146 : ValThrLeuProSerAlaValProLeuMetLeuAspLeuIleLeuProLeuAsnGluS : 165 :!!||| ! !..! ! !!|||:!!:!:||||||:!!:!::!!||||||||||||| IleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluS 457181 : ATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAAT : 457238 166 : erArgGlyValAsnLeuCysTyrTyrAlaGluTyrPheIleAspGlnGlnLysTyrPh : 184 ||||| ! !.!.|||! ! ! ||||||||||||:!!|||..!:!!||||||.! erArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMe 457239 : CACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATAT : 457295 185 : eIleTyrLeuLeuLeuHisThrPheIleCysValSerPheThrIleLeuIleValThr : 203 . !|||:!!:!! !|||! !.!!! |||:!! !.!!.!! ! !! :!!||| tHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThr 457296 : GCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACA : 457352 204 : AlaValAspSerThrPheValSerIleValTyrHisAlaValGlyLeuPheAspIle : 222 ||| !!!:||| !.!!:!!!!!! !||| |||!.! !||||||||| ! :!! AlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457353 : GCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: NvOr168 145 222 . KQ414815.1 457180 457411 + 158 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457181 457411 158 + . gene_id 1 ; sequence NvOr168 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457181 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457181 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457181 457411 158 + . alignment_id 1 ; Query NvOr168 ; Align 457181 146 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr168 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 153 -> 223 Target range: 482028 -> 482238 154 : LeuMetLeuAspLeuIleLeuProLeuAsnGluSerArgGlyValAsnLeuCysTyrT : 173 !!!:!:||||||:!!|||:!!||||||||||||!!!||| ! !.!.!!! ! PheValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValS 482029 : TTCGTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTAT : 482086 174 : yrAlaGluTyrPheIleAspGlnGlnLysTyrPheIleTyrLeuLeuLeuHisThrPh : 192 !|||||||||||||||||||||||||||! :!!!:!:!! !!!!||| !!: erMetGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTr 482087 : CAATGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTG : 482143 193 : eIleCysValSerPheThrIleLeuIleValThrAlaValAspSerThrPheValSer : 211 :.!!! ! !! ! ! ..! ! !|||:!!..!!.!:!!!!:!!! !.!!|||! ! pPheSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMet 482144 : GTTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATG : 482200 212 : IleValTyrHisAlaValGlyLeuPheAspIleLeu : 223 :!! ! ||||||!.!.!!|||||| !:!!:!! TrpLeuGluHisAlaAlaSerLeuPheThrLeuVal 482201 : TGGCTTGAACACGCTGCAAGCTTGTTCACCCTTGTA : 482238 vulgar: NvOr168 153 223 . KQ414815.1 482028 482238 + 123 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482029 482238 123 + . gene_id 2 ; sequence NvOr168 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482029 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 482029 482238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482029 482238 123 + . alignment_id 2 ; Query NvOr168 ; Align 482029 154 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr168 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 154 -> 223 Target range: 485722 -> 485929 155 : MetLeuAspLeuIleLeuProLeuAsnGluSerArgGlyValAsnLeuCysTyrTyrA : 174 !!:||||||:!!:!::!!||||||||| ! !!!||| ! !!..:!! ! !!: IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 175 : laGluTyrPheIleAspGlnGlnLysTyrPheIleTyrLeuLeuLeuHisThrPheIl : 193 !!|||:!!|||:!!|||||||||||||||||| ! !:!! ! !|||..! !!:! erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 194 : eCysValSerPheThrIleLeuIleValThrAlaValAspSerThrPheValSerIle : 212 !! !|||! !.!! ! :!!:!!:!! !::!...::: ...::::!!||| uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 213 : ValTyrHisAlaValGlyLeuPheAspIleLeu : 223 :!! ! |||.!! !||||||!:! |||:!! IleGlnHisThrCysGlyLeuTyrThrIleVal 485895 : ATACAGCACACCTGTGGTTTGTATACAATCGTT : 485929 vulgar: NvOr168 154 223 . KQ414815.1 485722 485929 + 119 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485929 119 + . gene_id 3 ; sequence NvOr168 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485929 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485929 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485929 119 + . alignment_id 3 ; Query NvOr168 ; Align 485723 155 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr168 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 173 -> 231 Target range: 478638 -> 478812 174 : AlaGluTyrPheIleAspGlnGlnLysTyrPheIleTyrLeuLeuLeuHisThrPheI : 193 .!!|||||||||||||||::::::||||||||||||::::::::: |||..!!:!: ThrGluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValTyrL 478639 : ACGGAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGTACC : 478696 194 : leCysValSerPheThrIleLeuIleValThrAlaValAspSerThrPheValSerIl : 212 !:! :!!! !.!. ! ! !:!! !..!|||..!!!:||| ! ! :!!! ! euSerLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMetTr 478697 : TGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTATGTG : 478753 213 : eValTyrHisAlaValGlyLeuPheAspIleLeuGluTyrArgMetArgAsnValLeu : 231 :!! |||.!!:!!||||||!:!:!!|||:!!..!|||!.!..!!:!!..:!!:!! pMetValHisThrIleGlyLeuTyrAsnIleIleArgTyrAsnGlnGlnArgLeuIle 478754 : GATGGTGCATACTATCGGCTTGTATAATATCATAAGGTATAATCAGCAAAGATTGATC : 478810 vulgar: NvOr168 173 231 . KQ414815.1 478638 478812 + 113 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478639 478812 113 + . gene_id 4 ; sequence NvOr168 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478639 478812 . + . KQ414815.1 exonerate:protein2genome:local exon 478639 478812 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478639 478812 113 + . alignment_id 4 ; Query NvOr168 ; Align 478639 174 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr168 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 154 -> 223 Target range: 475566 -> 475773 155 : MetLeuAspLeuIleLeuProLeuAsnGluSerArgGlyValAsnLeuCysTyrTyrA : 174 !!:||||||! !:!:||||||||||||||||||||| ! ! ! ! IleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleArgI 475567 : ATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaa : 475624 175 : laGluTyrPheIleAspGlnGlnLysTyrPheIleTyrLeuLeuLeuHisThrPheIl : 193 ||||||||||||::::!!|||||||||||| ! !:!!:!!:!! ! !:! leGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrVa 475625 : tagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGT : 475681 194 : eCysValSerPheThrIleLeuIleValThrAlaValAspSerThrPheValSerIle : 212 ! :!! !.!. ! ! !! !..!|||..!!!::!!! !|||..!! ! lThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrp 475682 : AACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGG : 475738 213 : ValTyrHisAlaValGlyLeuPheAspIleLeu : 223 :!! ! |||..!:!:...||||||:::|||::: LeuGlnHisCysIleSerLeuPheGluIleVal 475739 : TTGCAACATTGCATaagtttatttgaaattgtt : 475773 vulgar: NvOr168 154 223 . KQ414815.1 475566 475773 + 107 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475567 475773 107 + . gene_id 5 ; sequence NvOr168 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475567 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475567 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475567 475773 107 + . alignment_id 5 ; Query NvOr168 ; Align 475567 155 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr169INT Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 138 -> 195 Target range: 478638 -> 478809 139 : AlaGluTyrPheValAspGlnAspGluTyrPheSerTyrIlePheSerHisThrValP : 158 .!!|||||||||:!!|||::: :::|||||| :::|||...||||||..! !. ThrGluTyrPheIleAspGluLysLysTyrPheIlePheIleIleSerHisValTyrL 478639 : ACGGAATACTTCATTGacgagaagaaatatttcatatttattatttctcacGTGTACC : 478696 159 : heValSerLeuLeuSerAlaSerIleLeuThrAlaPheAspSerThrPheValLeuIl : 177 !. !! !:!!:!! !|||!!!:!!! !..!||| !!!:||| ! ! :!!:!! euSerLeuIleMetHisAlaThrValTyrValAlaThrGluSer***ValIleMetTr 478697 : TGTCGTTGATAATGCATGCAACTGTATACGTAGCCACCGAGTCGTGAGTGATTATGTG : 478753 178 : eThrGlnHisGlyIleGlyLeuLeuHisValLeuLysTyrArgLeuAsnLysIle : 195 ! ! !||| !|||||||||! !:!!:!!:!!!:!|||!.!! !.!.!:!:!: pMetValHisThrIleGlyLeuTyrAsnIleIleArgTyrAsnGlnGlnArgLeu 478754 : GATGGTGCATACTATCGGCTTGTATAATATCATAAGGTATAATCAGCAAAGATTG : 478809 vulgar: NvOr169INT 138 195 . KQ414815.1 478638 478809 + 102 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 478639 478809 102 + . gene_id 1 ; sequence NvOr169INT ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 478639 478809 . + . KQ414815.1 exonerate:protein2genome:local exon 478639 478809 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 478639 478809 102 + . alignment_id 1 ; Query NvOr169INT ; Align 478639 139 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr170 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 153 -> 235 Target range: 481995 -> 482241 154 : LeuLeuPheValThrLeuProAlaValIleProMetIleLeuAsnIleIleLeuThrA : 173 :!!|||.!.:!!! !||| ! !:!! !.!.:!!|||:!!:!!|||:!! !!! ValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValProL 481996 : GTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTCCTC : 482053 174 : rgAsnGluThrPheLysLysSerLeuCysIleTyrCysGluTyrTyrIleAspGlnAs : 192 !||||||||| !! ! ! ..!!!! :!!! ||||||!:!|||||||||.! euAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGlnGl 482054 : TAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCAGCA : 482110 193 : pLysTyrPhePheTyrIlePheLeuHisHisIleIleAlaGlyIleAlaThrIlePhe : 211 .||||||! .!!!:!||| !!!|||!!. .!!:!! !:!!!.!..! ! nLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAlaThr 482111 : GAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCAACG : 482167 212 : LeuThrIleGlyIleAspThrSerTyrValAsnCysValGlnHisValLeuAlaLeuP : 231 :!!! !:!!||||||!!:|||! ! !|||! !! :!!:!!|||!.! !::!|||| IleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerLeuP 482168 : ATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCTTGT : 482227 232 : heAsnValSerArg : 235 ||!.!:!! !||| heThrLeuValArg 482228 : TCACCCTTGTAAGG : 482241 vulgar: NvOr170 153 235 . KQ414815.1 481995 482241 + 113 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481996 482241 113 + . gene_id 1 ; sequence NvOr170 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481996 482241 . + . KQ414815.1 exonerate:protein2genome:local exon 481996 482241 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481996 482241 113 + . alignment_id 1 ; Query NvOr170 ; Align 481996 154 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr172PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 95 -> 183 Target range: 457153 -> 457417 96 : ValTyrLeuTyrAlaAlaGlyPheAlaPheSerGlnValSerMetValProValIleL : 115 |||! ! !|||..!!.!!.!.!.!.!.!!!!! !:!!..!:!: !!|||:!!:!!| ValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuL 457154 : GTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTAC : 457211 116 : euAspTyrIleTrpProLeuAsnGluSerArgProLysIleLeuIleValHisAlaGl : 134 ||||| !:!: ||||||||||||||||||||| ||| !:!! ||||| euAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaGl 457212 : TCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGA : 457268 135 : uTyrIleIleAspProLeuGlnTyrTyrPheGluLeuTyrGlyAlaTyrCysIleLeu : 153 ||||.!!:!!||| ! !:!!||| ! ! :!! !!.! ! ! !! ! ! uTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCys 457269 : ATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGC : 457325 154 : ThrPheValAsnLeuThrValLeuIleSerIleAspThrAlaPheSerSerIleValT : 173 !.!.:!! !|||..!|||! !:!!! !!!::!! !.!!! !!!!! !||| LeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValL 457326 : CTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTAC : 457385 174 : yrGlnAsnLeuGlyValPheSerIleValLys : 183 !!. !! !|||:!!|||!.!:!!..!!:! euHisValCysGlyLeuPheLysLeuThrArg 457386 : TGCACGTTTGTGGATTGTTCAAGCTTACTAGG : 457417 vulgar: NvOr172PSE 95 183 . KQ414815.1 457153 457417 + 104 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457154 457417 104 + . gene_id 1 ; sequence NvOr172PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457154 457417 . + . KQ414815.1 exonerate:protein2genome:local exon 457154 457417 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457154 457417 104 + . alignment_id 1 ; Query NvOr172PSE ; Align 457154 96 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 146 -> 216 Target range: 485722 -> 485929 147 : PheLeuAspLysValSerProLeuAsnGluSerArgProLeuLeuMetProPheTyrA : 166 .!!||||||! :!!! !||||||||| ! !!!||||||! ! !!!:|||.!. !!: IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 167 : laAspTyrIleValPheAspGlnAlaAspTyrHisTyrThrSerCysPheHisIleAl : 185 !!!!::!!.!!||| |||||| ! ! ||| !||| !!! !... |||:!!!. erGluHisPheVal---AspGlnGlnLysTyrPheTyrProIleAlaAlaHisValVa 485781 : CGGAACATTTTGTC---GATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGT : 485834 186 : aPheValTyrIleSerSerAlaLeuLeuPheCysGlyValAspAlaThrPheValMet : 204 !.!! !! !|||! !.!!|||:!!:!!!!. !.!!...::: ...::: ! lLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAla 485835 : TCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCG : 485891 205 : SerValGlnHisThrCysGlyLeuPheAlaIleIle : 216 ! !:!!||||||||||||||||||!:!.!!|||:!! IleIleGlnHisThrCysGlyLeuTyrThrIleVal 485892 : ATAATACAGCACACCTGTGGTTTGTATACAATCGTT : 485929 vulgar: NvOr175 146 216 . KQ414815.1 485722 485929 + 110 M 24 72 G 1 0 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485929 110 + . gene_id 1 ; sequence NvOr175 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485929 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485929 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 485723 485929 110 + . alignment_id 1 ; Query NvOr175 ; Align 485723 147 72 ; Align 485795 172 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 128 -> 215 Target range: 457153 -> 457411 129 : ValTyrValTrpPheGlyTrpThrValTyrThrLeuMetProPheIleProTyrPheL : 148 |||! !..!!::! !||| !||| !||| !:!!! !.!!.!!||| !!.| ValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuL 457154 : GTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTAC : 457211 149 : euAspLysValSerProLeuAsnGluSerArgProLeuLeuMetProPheTyrAlaAs : 167 |||||! ||| !|||||||||||||||||||||! ! !:!: !.!! |||!! euAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaGl 457212 : TCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGA : 457268 168 : pTyrIleValPheAspGlnAlaAspTyrHisTyrThrSerCysPheHisIleAlaPhe : 186 :|||.!!||| |||..! ! ! ||| :!! !! ! ! |||||| ! uTyrPheVal---AspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleThr 457269 : ATACTTTGTC---GACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCACG : 457322 187 : ValTyrIleSerSerAlaLeuLeuPheCysGlyValAspAlaThrPheValMetSerV : 206 ! :!:! !:!!||| ! !!!. !.! !!!::!! !.!!:!!! !!:!| CysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnV 457323 : TGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACG : 457382 207 : alGlnHisThrCysGlyLeuPheAlaIle : 215 ||! !|||..!|||||||||||| !:!! alLeuHisValCysGlyLeuPheLysLeu 457383 : TACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: NvOr175 128 215 . KQ414815.1 457153 457411 + 108 M 42 126 G 1 0 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457154 457411 108 + . gene_id 2 ; sequence NvOr175 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457154 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457154 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457154 457411 108 + . alignment_id 2 ; Query NvOr175 ; Align 457154 129 126 ; Align 457280 172 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr166 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 139 -> 227 Target range: 457150 -> 457411 140 : SerValTyrLeuTyrThrAlaGlyIleAlaPheThrThrLeuProCysLeuIleProA : 159 !!!|||! ! !||| !!.!!.!:!:!.!.!!|||||||||! ! |||.!!||| ThrValSerThrTyrCysGlyAlaLeuValIleThrThrLeuGln---LeuPheProI 457151 : ACAGTTTCTACTTATTGTGGCGCACTGGTTATTACCACGTTGCAA---CTCTTTCCGA : 457205 160 : laValLeuAspLeuIleIleProLeuAsnAspSerArgGlnLysValLeuCysPheTy : 178 !:!!||||||:!!:!::!!|||||||||!!:||||||! ! !|||! !.!! leLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluLeuTyrLeuTh 457206 : TATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTAC : 457262 179 : rGlyGluTyrPheIleAspGlnArgValTyrTyrTyrGluLeuLeuLeuHisThrPhe : 197 !.!|||||||||:!!|||..!!:! !||| :!! ! :!!:!! !|||! !.!! rAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIle 457263 : AGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATC : 457319 198 : ValCysValMetCysThrIleMetLeuPheThrThrIleAspAlaAlaTyrAlaCysC : 217 ..!|||:!!:!! !.!! !! !!!.|||.!!! !!!::!! ! ! ! ThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrA 457320 : ACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGA : 457379 218 : ysIleGluHisValIleGlyLeuPheAsnIle : 227 !:!! !|||||| !|||||||||!!.:!! snValLeuHisValCysGlyLeuPheLysLeu 457380 : ACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: NvOr166 139 227 . KQ414815.1 457150 457411 + 134 M 15 45 G 1 0 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457151 457411 134 + . gene_id 1 ; sequence NvOr166 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457151 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457151 457411 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457151 457411 134 + . alignment_id 1 ; Query NvOr166 ; Align 457151 140 45 ; Align 457196 156 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr166 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 158 -> 228 Target range: 485719 -> 485929 159 : AlaValLeuAspLeuIleIleProLeuAsnAspSerArgGlnLysValLeuCysPheT : 178 ::!:!!||||||:!!:!:|||||||||||| !!!!!|||! !::!..!:!! !.!. SerIleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleA 485720 : AGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAA : 485777 179 : yrGlyGluTyrPheIleAspGlnArgValTyrTyrTyrGluLeuLeuLeuHisThrPh : 197 !!..!|||:!!|||:!!||||||!:! !|||!:!||| :!! ! !|||..! ! snSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValVa 485778 : ACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGT : 485834 198 : eValCysValMetCysThrIleMetLeuPheThrThrIleAspAlaAlaTyrAlaCys : 216 !:!!! !|||!!: ! ! !!::!!!!. !!:! ::: ... lLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAla 485835 : TCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCG : 485891 217 : CysIleGluHisValIleGlyLeuPheAsnIleVal : 228 |||:!!|||..! !||||||!:!!..|||||| IleIleGlnHisThrCysGlyLeuTyrThrIleVal 485892 : ATAATACAGCACACCTGTGGTTTGTATACAATCGTT : 485929 vulgar: NvOr166 158 228 . KQ414815.1 485719 485929 + 121 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485720 485929 121 + . gene_id 2 ; sequence NvOr166 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485720 485929 . + . KQ414815.1 exonerate:protein2genome:local exon 485720 485929 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485720 485929 121 + . alignment_id 2 ; Query NvOr166 ; Align 485720 159 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr166 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 159 -> 228 Target range: 475566 -> 475773 160 : ValLeuAspLeuIleIleProLeuAsnAspSerArgGlnLysValLeuCysPheTyrG : 179 :!!||||||! !:!::!!|||||||||!!:||||||! !.. !! ! ... IleLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleArgI 475567 : ATCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaa : 475624 180 : lyGluTyrPheIleAspGlnArgValTyrTyrTyrGluLeuLeuLeuHisThrPheVa : 198 ||||||||||||::::!!!:! !|||!:!||| ! !:!!:!!:!! ! !|| leGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrVa 475625 : tagaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGT : 475681 199 : lCysValMetCysThrIleMetLeuPheThrThrIleAspAlaAlaTyrAlaCysCys : 217 | :!!:!: ! !! !!:!..!.!!! !!!:||| !!:!.!! !! lThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrp 475682 : AACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGG : 475738 218 : IleGluHisValIleGlyLeuPheAsnIleVal : 228 :!::!!||| !|||...||||||...|||||| LeuGlnHisCysIleSerLeuPheGluIleVal 475739 : TTGCAACATTGCATaagtttatttgaaattgtt : 475773 vulgar: NvOr166 159 228 . KQ414815.1 475566 475773 + 107 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475567 475773 107 + . gene_id 3 ; sequence NvOr166 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475567 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475567 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475567 475773 107 + . alignment_id 3 ; Query NvOr166 ; Align 475567 160 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr166 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 139 -> 227 Target range: 471546 -> 471810 140 : SerValTyrLeuTyrThrAlaGlyIleAlaPheThrThrLeuProCysLeuIleProA : 159 |||! !!:!! !|||||| ! !:!! ! !!:!..!:!!! !! !:!! ||| SerGlyPheTyrTyrThrAsnLeuLeuIleThrSerValIleLeuSerMetSerProL 471547 : TCAGGTTTCTATTACACGAATCTACTCATTACTAGTGTAATACTGTCCATGTCGCCTC : 471604 160 : laValLeuAspLeuIleIleProLeuAsnAspSerArgGlnLysValLeuCysPheTy : 178 !:!!||||||:!!||||||||||||||| ||||||! !::: !!!! ||| euIleLeuAspIleIleIleProLeuAsnThrSerArgProArgTyrPheProPheTh 471605 : TTATTCTCGATATTATAATACCTCTGAACACGTCACGTCCACGTTACTTTCCATTTAC : 471661 179 : rGlyGluTyrPheIleAspGlnArgValTyrTyrTyrGluLeuLeuLeuHisThrPhe : 197 !!!:!:!.!! !:!!|||..!! !|||!:!!! !:!! !:!! !:!! ! rPheAspPheIleProAsnGlnGluGluTyrPhe***ProIleThrIlePheSerGly 471662 : GTTCGATTTCATTCCCAATCAAGAGGAATACTTCTAACCGATTACTATCTTTTCTGGC : 471718 198 : ValCysValMetCysThrIleMetLeuPheThrThrIleAspAlaAlaTyrAlaCysC : 217 :!!! !!!:||| !:!! !.!.! !!:!! !!!:!.! ! ! ! IleLeuCysIleCysGlyLeuAlaAlaMetIleSerSerGluGlyLeuLeuMetMetA 471719 : ATATTGTGCATTTGTGGATTAGCAGCAATGATAAGTAGCGAGGGTCTGCTTATGATGA : 471778 218 : ysIleGluHisValIleGlyLeuPheAsnIle : 227 !:!! !|||||| !||||||!:!|||||| snValLeuHisValArgGlyLeuTyrAsnIle 471779 : ATGTTTTACACGTACGTGGATTGTATAACATC : 471810 vulgar: NvOr166 139 227 . KQ414815.1 471546 471810 + 104 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471547 471810 104 + . gene_id 4 ; sequence NvOr166 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471547 471810 . + . KQ414815.1 exonerate:protein2genome:local exon 471547 471810 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471547 471810 104 + . alignment_id 4 ; Query NvOr166 ; Align 471547 140 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr166 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 159 -> 228 Target range: 482031 -> 482238 160 : ValLeuAspLeuIleIleProLeuAsnAspSerArgGlnLysValLeuCysPheTyrG : 179 |||||||||:!!|||:!!|||||||||!!:!!!||| ! ! !!!! ! ! ValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerM 482032 : GTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAA : 482089 180 : lyGluTyrPheIleAspGlnArgValTyrTyrTyrGluLeuLeuLeuHisThrPheVa : 198 !||||||||||||||||||!:! !|||! ! :!! !!!!||| !!:: ! etGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPh 482090 : TGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTT : 482146 199 : lCysValMetCysThrIleMetLeuPheThrThrIleAspAlaAlaTyrAlaCysCys : 217 !! ! !!:!: ..! !! !:!!.!!..! !|||!!:.!! ! !!.! !! eSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrp 482147 : TTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGG : 482203 218 : IleGluHisValIleGlyLeuPheAsnIleVal : 228 :!!||||||!.! !.!!||||||!.!:!!||| LeuGluHisAlaAlaSerLeuPheThrLeuVal 482204 : CTTGAACACGCTGCAAGCTTGTTCACCCTTGTA : 482238 vulgar: NvOr166 159 228 . KQ414815.1 482031 482238 + 103 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482032 482238 103 + . gene_id 5 ; sequence NvOr166 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482032 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 482032 482238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482032 482238 103 + . alignment_id 5 ; Query NvOr166 ; Align 482032 160 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr176PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 87 -> 168 Target range: 1224270 -> 1224030 88 : LeuValTyrThrSerIleProPheIleProPheIleLeuAspLeuValHisProLe : 106 |||||||||! !|||.!!|||!!.||| ! :!!||||||:!!||| ||||| LeuValTyrMetSerPheProLeuIleAsnProValLeuAspValValAlaProLe 1224270 : TTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTT : 1224216 107 : uGluAsnGlyThrArgProLeuPheMetProPheTyrAlaAspTyrValPhePheA : 125 | |||! !|||||||||! ! :!: !.!! !.!..!|||:!!|||.!.| u---AsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleA 1224215 : A---AACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAG : 1224162 126 : spGlnAsnAspTyrHisTyrSerAlaCysGlyHisValAlaValIleTyrPheThr : 143 ||:!! !!!!::!! !||||||!.! ! !|||:!! !..!! ! .!!:!! spGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSer 1224161 : ACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCC : 1224108 144 : SerPheLeuLeuTyrSerGlyValAspGlyIleTyrValLeuThrValLysHisTh : 162 !!! :!!:!! ! !!.!|||||| !:!!|||:!! !! !:!! ||| CysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLe 1224107 : TGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCT : 1224051 163 : rCysGlyLeuPheAlaIle : 168 !|||||||||||||||:!: uCysGlyLeuPheAlaVal 1224050 : TTGCGGATTGTTCGCAGTG : 1224031 vulgar: NvOr176PSE 87 168 . KQ414851.1 1224270 1224030 - 132 M 19 57 G 1 0 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224270 132 - . gene_id 1 ; sequence NvOr176PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224270 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224270 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224270 132 - . alignment_id 1 ; Query NvOr176PSE ; Align 1224271 88 57 ; Align 1224214 108 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr176PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 87 -> 168 Target range: 1243842 -> 1243605 88 : LeuValTyrThrSerIleProPheIleProPheIleLeuAspLeuValHisProLe : 106 :!!:!!!:!..!! !.!!|||!!.|||||| |||||||||:!!||| ||||| IleIlePheValLeuPheProLeuIleProProIleLeuAspValValSerProLe 1243842 : ATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCT : 1243788 107 : uGluAsnGlyThrArgProLeuPheMetProPheTyrAlaAspTyrValPhePheA : 125 | |||! !|||||| !!! !.!. ... ...|||:!! |||| u---AsnGluThrArgSerArgIleGluValIleLysLeuGlnTyrLeu---PheA 1243787 : T---AATGAGACTCGATCTCGGATAGaagtaataaaattgcaataccTG---TTCG : 1243737 126 : spGlnAsnAspTyrHisTyrSerAlaCysGlyHisValAlaValIleTyrPheThr : 143 ||...... |||||| ! !:!!..!!.! ! !! |||! ! spMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMet 1243736 : ACAtggagaagaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATG : 1243683 144 : SerPheLeuLeuTyrSerGlyValAspGlyIleTyrValLeuThrValLysHisTh : 162 !!!.!.:!!:!! ! ! !:!!|||!.!:!!||||||:!!! !:!! ! ||||| ThrMetMetValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisTh 1243682 : ACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACAC : 1243626 163 : rCysGlyLeuPheAlaIle : 168 ||||||||||||||||:!! rCysGlyLeuPheAlaVal 1243625 : GTGTGGCTTATTCGCTGTT : 1243606 vulgar: NvOr176PSE 87 168 . KQ414851.1 1243842 1243605 - 107 M 19 57 G 1 0 M 15 45 G 1 0 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243842 107 - . gene_id 2 ; sequence NvOr176PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243842 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243842 . - . insertions 0 ; deletions 2 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243842 107 - . alignment_id 2 ; Query NvOr176PSE ; Align 1243843 88 57 ; Align 1243786 108 45 ; Align 1243741 124 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 155 Query range: 123 -> 215 Target range: 1234341 -> 1234065 124 : IleThrPheTyrGlnValTyrValTrpPheGlyTrpThrValTyrThrLeuMetPr : 142 |||..!|||!:!..!! ! :!! !! ! ! !..!|||!:! !|||:!:|| IleValPhePheSerAspThrLeuLeuSerPheMetValValPheLeuLeuValPr 1234341 : ATCGTGTTCTTCTCAGATACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCC : 1234287 143 : oPheIleProTyrPheLeuAspLysValSerProLeuAsnGluSerArgProLeuL : 161 |!!.:!! ! ||||||||| ||| !||||||||||||!!!||||||! !! oLeuValPheProPheLeuAspValValLeuProLeuAsnGluThrArgProArgG 1234286 : ATTAGTTTTTCCATTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGAC : 1234230 162 : euMetProPheTyrAlaAspTyrIleValPheAspGlnAlaAspTyrHisTyrThr : 179 !... !||| !.!:!!|||:!! !||||||:!!||||||||| !!:!!:! lnGlnGlyPheArgValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSer 1234229 : AGCAAGGATTCAGAGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGC : 1234176 180 : SerCysPheHisIleAlaPheValTyrIleSerSerAlaLeuLeuPheCysGlyVa : 198 !! !|||!!.:!:|||!::! ! :!! ! !!.!:!!:!!.!. ! !|| ValTyrPheGlnLeuAlaTrpGlyAlaValValValValMetIleIleIleThrVa 1234175 : GTGTACTTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGT : 1234119 199 : lAspAlaThrPheValMetSerValGlnHisThrCysGlyLeuPheAlaIle : 215 ||||:!! !!:!:!!!!:! !:!!!!.|||.!! !!|||:!!||||||:!: lAspSerLeuTyrMetIleIleIleHisHisAlaSerGlyMetPheAlaVal 1234118 : AGACTCGTTGTACATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTG : 1234066 vulgar: NvOr175 123 215 . KQ414851.1 1234341 1234065 - 155 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234066 1234341 155 - . gene_id 1 ; sequence NvOr175 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234066 1234341 . - . KQ414851.1 exonerate:protein2genome:local exon 1234066 1234341 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234066 1234341 155 - . alignment_id 1 ; Query NvOr175 ; Align 1234342 124 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 150 Query range: 130 -> 215 Target range: 1224285 -> 1224030 131 : ValTrpPheGlyTrpThrValTyrThrLeuMetProPheIleProTyrPheLeuAs : 149 :!!|||.!.! ! ! !||||||! ! !.!.|||!!.||| ! !!||||| LeuTrpIleValLeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAs 1224285 : TTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGA : 1224231 150 : pLysValSerProLeuAsnGluSerArgProLeuLeuMetProPheTyrAlaAspT : 168 | |||:!!||||||||||||!!!||||||! ! !:!: !.!! !.!..!| pValValAlaProLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerT 1224230 : TGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTT : 1224174 169 : yrIleValPheAspGlnAlaAspTyrHisTyrThrSerCysPheHisIleAlaPhe : 186 ||||| !!.!.|||:!! !!!::!! !|||!:! ! !||||||:!! ! ! yrIlePheIleAspGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThr 1224173 : ACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACC : 1224120 187 : ValTyrIleSerSerAlaLeuLeuPheCysGlyValAspAlaThrPheValMetSe : 205 ! ||||||!!!!.!:!!:!!.!. !!.!|||||| ! !!:!:!!! ! SerValIleSerCysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIl 1224119 : AGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTAT : 1224063 206 : rValGlnHisThrCysGlyLeuPheAlaIle : 215 !:!! ||| !|||||||||||||||:!: eIlePheHisLeuCysGlyLeuPheAlaVal 1224062 : CATTTTTCACCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: NvOr175 130 215 . KQ414851.1 1224285 1224030 - 150 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224285 150 - . gene_id 2 ; sequence NvOr175 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224285 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224285 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224285 150 - . alignment_id 2 ; Query NvOr175 ; Align 1224286 131 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 123 -> 215 Target range: 1229506 -> 1229230 124 : IleThrPheTyrGlnValTyrValTrpPheGlyTrpThrValTyrThrLeuMetPr : 142 |||..!|||! ! !! ! !:!! |||!.! ! !|||!:! !|||:!:|| IleValPheSerLeuAspAlaLeuLeuPheAlaMetCysValPheLeuLeuValPr 1229506 : ATCGTATTTTCCTTAGATGCTTTACTCTTCGCAATGTGTGTTTTCTTGCTGGTCCC : 1229452 143 : oPheIleProTyrPheLeuAspLysValSerProLeuAsnGluSerArgProLeuL : 161 |!!..!! ! !||||||! ||| !|||! !||||||!!!||||||! !! oLeuPheGlyProAlaLeuAspIleValLeuProSerAsnGluThrArgProArgG 1229451 : ATTGTTTGGTCCAGCCCTGGACATCGTCCTTCCATCAAATGAAACTAGGCCACGGC : 1229395 162 : euMetProPheTyrAlaAspTyrIleValPheAspGlnAlaAspTyrHisTyrThr : 179 !...! !||| !.!:!!||||||:!!|||||||||||||||||| !!:! ! lnGlnLeuPheArgValAsnTyrIleIlePheAspGlnAlaAspTyrPhePheTyr 1229394 : AACAACTGTTCAGAGTTAACTATATAATTTTCGACCAAGCAGACTATTTTTTCTAC : 1229341 180 : SerCysPheHisIleAlaPheValTyrIleSerSerAlaLeuLeuPheCysGlyVa : 198 !! !.!!!!.:!: !!:: ! ||| ! !!.!:!! !.!! ! !|| ValTyrIleGlnLeuPheTrpCysThrIleValLeuValMetAlaIleIleThrVa 1229340 : GTGTATATTCAATTGTTTTGGTGTACAATCGTTCTTGTAATGGCCATTATCACCGT : 1229284 199 : lAspAlaThrPheValMetSerValGlnHisThrCysGlyLeuPheAlaIle : 215 ||||:!! !!:!:!!!!:! !:!! ! |||.!! !!|||:!!||||||||| lAspSerLeuTyrMetIleIleIleTyrHisAlaSerGlyMetPheAlaIle 1229283 : AGATTCATTGTACATGATCATAATTTACCATGCCAGCGGAATGTTCGCTATA : 1229231 vulgar: NvOr175 123 215 . KQ414851.1 1229506 1229230 - 135 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229231 1229506 135 - . gene_id 3 ; sequence NvOr175 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229231 1229506 . - . KQ414851.1 exonerate:protein2genome:local exon 1229231 1229506 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229231 1229506 135 - . alignment_id 3 ; Query NvOr175 ; Align 1229507 124 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 136 -> 215 Target range: 1243839 -> 1243605 137 : ValTyrThrLeuMetProPheIleProTyrPheLeuAspLysValSerProLeuAs : 155 :!!!:!..!|||.!.|||!!.|||||| .!.|||||| |||||||||||||| IlePheValLeuPheProLeuIleProProIleLeuAspValValSerProLeuAs 1243839 : ATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAA : 1243785 156 : nGluSerArgProLeuLeuMetProPheTyrAlaAspTyrIleValPheAspGlnA : 174 ||||!!!||| !!! !:!! ... ...|||:!: ||||||... nGluThrArgSerArgIleGluValIleLysLeuGlnTyrLeu---PheAspMetG 1243784 : TGAGACTCGATCTCGGATAGaagtaataaaattgcaataccTG---TTCGACAtgg : 1243731 175 : laAspTyrHisTyrThrSerCysPheHisIleAlaPheValTyrIleSerSerAla : 192 |||::: !!:!!! !!.!!:: !! .!!! !!!! ! luLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMet 1243730 : agaagaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATG : 1243677 193 : LeuLeuPheCysGlyValAspAlaThrPheValMetSerValGlnHisThrCysGl : 211 :!!:!!.!. ! !:!!|||||| !!:!|||:!:! !:!!!!.||||||||||| MetValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGl 1243676 : ATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGG : 1243620 212 : yLeuPheAlaIle : 215 ||||||||||:!! yLeuPheAlaVal 1243619 : CTTATTCGCTGTT : 1243606 vulgar: NvOr175 136 215 . KQ414851.1 1243839 1243605 - 126 M 33 99 G 1 0 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243839 126 - . gene_id 4 ; sequence NvOr175 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243839 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243839 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243839 126 - . alignment_id 4 ; Query NvOr175 ; Align 1243840 137 99 ; Align 1243741 171 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 123 -> 215 Target range: 1240103 -> 1239827 124 : IleThrPheTyrGlnValTyrValTrpPheGlyTrpThrValTyrThrLeuMetPr : 142 ||| !!:! !..!||| !:!!!::! :::::: :!!:!:|| IleTyrTyrIleSerValValLeuPheSerValLeuPheIlePheLeuValValPr 1240103 : ATATATTACATTTCAGTCGTTTTATTTTCcgttttgttcatttttctggTGGTTCc : 1240049 143 : oPheIleProTyrPheLeuAspLysValSerProLeuAsnGluSerArgProLeuL : 161 |......||| ...||||||! :!!!.!||||||||||||!!!||| !!! oIlePheProProLeuLeuAspIleLeuLysProLeuAsnGluThrArgAlaArgG 1240048 : gatttttcctcctcttctggACATTTTAAAACCTTTAAACGAAACCCGAGCACgcc : 1239992 162 : euMetProPheTyrAlaAspTyrIleValPheAspGlnAlaAspTyrHisTyrThr : 179 ||| ...::!|||:!::!!.!!|||::!! !!!: ! ! ! ! lnLysIlePheLysValAsnTyrLeuIleIleAspArgAspGluGlnAlaLeuIle 1239991 : agaaaatattcaaagttaaTTACCTGATCATTGACAGGGATGAACAAGCTCTGATC : 1239938 180 : SerCysPheHisIleAlaPheValTyrIleSerSerAlaLeuLeuPheCysGlyVa : 198 !!!! !||||||:!::!!!::..! !|||!!! !!.!:!!! ! ! !.!! ThrTyrPheHisLeuSerTrpThrThrIleThrLeuGlyIleSerValLeuSerSe 1239937 : ACATATTTTCACTTGTCTTGGACAACTATCACTCTTGGGATATCTGTGCTTAGCTC : 1239881 199 : lAspAlaThrPheValMetSerValGlnHisThrCysGlyLeuPheAlaIle : 215 !!!: !! !!:!|||:!: !:!!!!.|||||| !!||||||||||||:!: rGluLeuIleTyrValLeuLeuIleHisHisThrSerGlyLeuPheAlaVal 1239880 : AGAATTGATATACGTCCTTCTTATTCATCATACCAGCGGTCTGTTTGCTGTG : 1239828 vulgar: NvOr175 123 215 . KQ414851.1 1240103 1239827 - 123 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239828 1240103 123 - . gene_id 5 ; sequence NvOr175 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239828 1240103 . - . KQ414851.1 exonerate:protein2genome:local exon 1239828 1240103 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239828 1240103 123 - . alignment_id 5 ; Query NvOr175 ; Align 1240104 124 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 331 -> 383 Target range: 1222508 -> 1222352 332 : AlaTyrCysSerLysTrpTyrValIleSerThrSerAlaArgAlaPheIleLysIl : 350 ::!|||..!||||||||||||! !:!! !!..!!.!!.!!:! !!!.||| ! ! SerTyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTyrTh 1222508 : AGTTACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTACAC : 1222454 351 : eIleMetValArgAlaLeuGluProCysArgLeuThrAlaGlyGlyLeuSerThrL : 369 !!:...:!!|||:!!:!!..!||||||! !|||||||||||||||:!! ! !: rMetGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisGluM 1222453 : GATGCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATGAGA : 1222397 370 : euCysMetGluSerPheGlyIleLeuIleLysThrSerValSer : 383 !! !!!:|||||||||||||||:!! !!!.!.!! !:!!!:! etAsnIleGluSerPheGlyIleValCysAsnAsnMetIleAsn 1222396 : TGAACATCGAGAGTTTCGGAATAGTATGTAATAATATGATAAAT : 1222353 vulgar: NvOr175 331 383 . KQ414851.1 1222508 1222352 - 110 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222353 1222508 110 - . gene_id 6 ; sequence NvOr175 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1222353 1222508 . - . KQ414851.1 exonerate:protein2genome:local exon 1222353 1222508 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222353 1222508 110 - . alignment_id 6 ; Query NvOr175 ; Align 1222509 332 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 328 -> 374 Target range: 1228557 -> 1228419 329 : PheLeuAlaAlaTyrCysSerLysTrpTyrValIleSerThrSerAlaArgAlaPh : 347 .!!||| ! !|||! !|||! !|||||| !:!!|||.!!!.! !!:! ! ! IleLeuTyrArgTyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgVa 1228557 : ATTCTTTACAGATACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGT : 1228503 348 : eIleLysIleIleMetValArgAlaLeuGluProCysArgLeuThrAlaGlyGlyL : 366 ||| ! !!:!!:...:!!|||||||||:!!||||||! !|||||||||||||||| lIleTyrMetMetGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyL 1228502 : AATTTACATGATGCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGAT : 1228446 367 : euSerThrLeuCysMetGluSerPhe : 374 ||! ! !:!! !||||||!:!||| euTyrGluMetAsnMetGluAsnPhe 1228445 : TGTACGAAATGAACATGGAGAACTTT : 1228420 vulgar: NvOr175 328 374 . KQ414851.1 1228557 1228419 - 106 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228420 1228557 106 - . gene_id 7 ; sequence NvOr175 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228420 1228557 . - . KQ414851.1 exonerate:protein2genome:local exon 1228420 1228557 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228420 1228557 106 - . alignment_id 7 ; Query NvOr175 ; Align 1228558 329 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr174PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 162 Query range: 87 -> 214 Target range: 1225871 -> 1224030 88 : PheLysLeuLeuPheThrGlnIleAlaAlaAspTrpGlnAsnIleThrAspLysSe : 106 |||::: |||||| !!:!.! ! |||:!! :!: !! |||.. PheArgLysLeuPheAspLeuMetValArgArgTrpLysLeuLeuGluAlaLysAs 1225871 : tttcgaaaattattcgatcTCATGGTACGAAGATGGAAACTGTTGGAAGCAAAGGA : 1225817 107 : rGluArgGluIleLeuSerLysTyrGlyAsnAspGlyArgPheAlaSerLeuPheT : 125 !|||! !|||||||||!.!|||||| !!:! ! |||! ! !!!! !.!.| pGluIleGluIleLeuLysLysTyrThrSerLysGlyMetArgLeuArgGluLeuT 1225816 : CGAAATAGAGATACTGAAGAAATACACCAGTAAAGGGATGAGACTTAGAGAACTGT : 1225760 126 : yrThr{P} >>>> Target Intron 1 >>>> {he}TyrValPheTrpAla : 132 ||! !{ } 1463 bp { !} :!!!:: !.! yrLys{A}++ ++{sp}SerLeuTrpIleVal 1225759 : ACAAA{G}gt.........................ag{ac}tCGTTGTGGATAGTT : 1224276 133 : TrpAlaThrTyrAsnMetMetProPheLeuProProIleLeuAspIleValLeuPr : 151 ! !..!|||! ! .!.|||!!.:!! !|||:!!||||||:!!||| !|| LeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAspValValAlaPr 1224275 : CTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCC : 1224219 152 : oLeuProAsnGlySerHisProLeuLeuLeuProPheTyrAlaAsnTyrIlePheP : 170 |||| |||! !!!!!..|||! ! !||| !.!! !.!!:!|||||||||. oLeu---AsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheI 1224218 : GTTA---AACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCA : 1224165 171 : heGluGlnLeuAspTyrHisTyrGluThrAlaLeuHisAlaPhePheValTyrPhe : 188 !.!!::!!! !!!::!! !|||.....! !!!!||| !!:! ! ! .!! leAspGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIle 1224164 : TAGACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATT : 1224111 189 : PheAlaThrSerLeuPheAlaGlyIleAspThrIleTyrValSerThrValLysHi : 207 ! !..! !! !:!!.!. !!.!:!:|||! !:!!|||:!!!!!! !:!! || SerCysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHi 1224110 : TCCTGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCA : 1224054 208 : sThrCysGlyLeuPheAlaIle : 214 | !|||||||||||||||:!: sLeuCysGlyLeuPheAlaVal 1224053 : CCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: NvOr174PSE 87 214 . KQ414851.1 1225871 1224030 - 162 M 39 117 S 0 1 5 0 2 I 0 1459 3 0 2 S 1 2 M 25 75 G 1 0 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1225871 162 - . gene_id 1 ; sequence NvOr174PSE ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1225754 1225871 . - . KQ414851.1 exonerate:protein2genome:local exon 1225754 1225871 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1225752 1225753 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1224291 1225753 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1224291 1224292 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1224031 1224290 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224290 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1225871 162 - . alignment_id 1 ; Query NvOr174PSE ; Align 1225872 88 117 ; Align 1224289 128 75 ; Align 1224214 154 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr174PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 128 -> 214 Target range: 1229485 -> 1229230 129 : ValPheTrpAlaTrpAlaThrTyrAsnMetMetProPheLeuProProIleLeuAs : 147 :!!.!!!::||| !..!..!!:! :!!:!:|||!!.!!! !||| !||||| LeuLeuPheAlaMetCysValPheLeuLeuValProLeuPheGlyProAlaLeuAs 1229485 : TTACTCTTCGCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGA : 1229431 148 : pIleValLeuProLeuProAsnGlySerHisProLeuLeuLeuProPheTyrAlaA : 166 ||||||||||||| !!|||! !!!!...|||! !! !! !! !||| !.!| pIleValLeuPro---SerAsnGluThrArgProArgGlnGlnLeuPheArgValA 1229430 : CATCGTCCTTCCA---TCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTA : 1229377 167 : snTyrIlePhePheGluGlnLeuAspTyrHisTyrGluThrAlaLeuHisAlaPhe : 184 ||||||||.!!|||!!:||| !|||||| !!:! ! ..! !:!!!!. !||| snTyrIleIlePheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPhe 1229376 : ACTATATAATTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTT : 1229323 185 : PheValTyrPhePheAlaThrSerLeuPheAlaGlyIleAspThrIleTyrValSe : 203 !:: ! .!! !! !..!! ! !.!! ! !:!!|||:!!:!:|||:!!! TrpCysThrIleValLeuValMetAlaIleIleThrValAspSerLeuTyrMetIl 1229322 : TGGTGTACAATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACATGAT : 1229266 204 : rThrValLysHisThrCysGlyLeuPheAlaIle : 214 !! !:!! ! |||.!! !!|||:!!||||||||| eIleIleTyrHisAlaSerGlyMetPheAlaIle 1229265 : CATAATTTACCATGCCAGCGGAATGTTCGCTATA : 1229231 vulgar: NvOr174PSE 128 214 . KQ414851.1 1229485 1229230 - 121 M 23 69 G 1 0 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229231 1229485 121 - . gene_id 2 ; sequence NvOr174PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229231 1229485 . - . KQ414851.1 exonerate:protein2genome:local exon 1229231 1229485 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1229231 1229485 121 - . alignment_id 2 ; Query NvOr174PSE ; Align 1229486 129 69 ; Align 1229417 153 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr174PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 122 -> 214 Target range: 1234338 -> 1234065 123 : LeuPheTyrThrPheTyrValPheTrpAlaTrpAlaThrTyrAsnMetMetProPh : 141 :!!|||!:!:!! ! :!!.!.! ! !!.!..!!:! :!!:!:|||!! ValPhePheSerAspThrLeuLeuSerPheMetValValPheLeuLeuValProLe 1234338 : GTGTTCTTCTCAGATACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATT : 1234284 142 : eLeuProProIleLeuAspIleValLeuProLeuProAsnGlySerHisProLeuL : 160 .:!! !|||.!!||||||:!!|||||||||||| |||! !!!!!..|||! !! uValPheProPheLeuAspValValLeuProLeu---AsnGluThrArgProArgG 1234283 : AGTTTTTCCATTCTTGGATGTCGTCCTTCCGTTA---AATGAAACTCGACCACGAC : 1234230 161 : euLeuProPheTyrAlaAsnTyrIlePhePheGluGlnLeuAspTyrHisTyrGlu : 178 !! ! !||| !.!||||||:!!!:!|||!!::!! !|||||| !!:!... lnGlnGlyPheArgValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSer 1234229 : AGCAAGGATTCAGAGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGC : 1234176 179 : ThrAlaLeuHisAlaPhePheValTyrPhePheAlaThrSerLeuPheAlaGlyIl : 197 ..! !!!!!!. ! !!::! ! !! !!!.!..!! !:!!.!. ! !:! ValTyrPheGlnLeuAlaTrpGlyAlaValValValValMetIleIleIleThrVa 1234175 : GTGTACTTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGT : 1234119 198 : eAspThrIleTyrValSerThrValLysHisThrCysGlyLeuPheAlaIle : 214 !|||:!!:!:|||:!!! !! !:!! ! |||.!! !!|||:!!||||||:!: lAspSerLeuTyrMetIleIleIleHisHisAlaSerGlyMetPheAlaVal 1234118 : AGACTCGTTGTACATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTG : 1234066 vulgar: NvOr174PSE 122 214 . KQ414851.1 1234338 1234065 - 113 M 30 90 G 1 0 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234066 1234338 113 - . gene_id 3 ; sequence NvOr174PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234066 1234338 . - . KQ414851.1 exonerate:protein2genome:local exon 1234066 1234338 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1234066 1234338 113 - . alignment_id 3 ; Query NvOr174PSE ; Align 1234339 123 90 ; Align 1234249 154 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr174PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 128 -> 214 Target range: 1243857 -> 1243605 129 : ValPheTrpAlaTrpAlaThrTyrAsnMetMetProPheLeuProProIleLeuAs : 147 :!!|||!:: !! ! !! !!:! :!:.!.|||!!.:!!|||||||||||||| LeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleLeuAs 1243857 : TTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGA : 1243803 148 : pIleValLeuProLeuProAsnGlySerHisProLeuLeuLeuProPheTyrAlaA : 166 |:!!|||! !|||||| |||! !!!!!.. !!! !:!! ... . pValValSerProLeu---AsnGluThrArgSerArgIleGluValIleLysLeuG 1243802 : TGTTGTTTCACCGCTT---AATGAGACTCGATCTCGGATAGaagtaataaaattgc : 1243749 167 : snTyrIlePhePheGluGlnLeuAspTyrHisTyrGluThrAlaLeuHisAlaPhe : 184 ..|||:!:||| ! ::: :::::: |||... :!!:!!.!! ! lnTyrLeuPheAspMetGluLysAsnPhe---TyrSerLeuTyrValTyrThrGly 1243748 : aataccTGTTCGACAtggagaagaatttt---tattcattatacGTCTACACTGGC : 1243698 185 : PheValTyrPhePheAlaThrSerLeuPheAlaGlyIleAspThrIleTyrValSe : 203 !:: !! |||.!..!!! !! !:!!.!. ! !||||||.!!:!!|||||| TrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValVa 1243697 : TGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGT : 1243641 204 : rThrValLysHisThrCysGlyLeuPheAlaIle : 214 !! !:!! ! |||||||||||||||||||||:!! lIleIleHisHisThrCysGlyLeuPheAlaVal 1243640 : AATCATTCATCACACGTGTGGCTTATTCGCTGTT : 1243606 vulgar: NvOr174PSE 128 214 . KQ414851.1 1243857 1243605 - 102 M 24 72 G 1 0 M 22 66 G 1 0 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243857 102 - . gene_id 4 ; sequence NvOr174PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243857 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243857 . - . insertions 0 ; deletions 2 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243857 102 - . alignment_id 4 ; Query NvOr174PSE ; Align 1243858 129 72 ; Align 1243786 154 66 ; Align 1243720 177 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr172PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 166 Query range: 254 -> 335 Target range: 1222687 -> 1222373 255 : GlnPheIleArgLeuAlaMetIleGluValGlyValMetIleHisLeuLeuTyrLe : 273 :!!.!!|||||||||||||||.!!! |||!.. ...||||||||| !|| GluLeuIleArgLeuAlaMetPheValValAlaGlnLysPheHisLeuLeuIleLe 1222687 : GAACTCATCAGGCTTGCGATGTTTGTCGTAGctcagaaatttcatttgctcATCCT : 1222633 274 : uSerTyrProGlyGlnLysValLeuAspTyrSerSerSerIleCysGlnGlu{Se} : 291 ||||! |||||||||! !:!!||||||:!!|||! !.!!:!:..!.!. !{! } uSerLeuProGlyGlnMetLeuLeuAspHisSerLeuGlyLeuAlaAspIle{Il} 1222632 : TAGTTTACCTGGGCAAATGTTGTTAGATCATAGTTTAGGATTGGCCGATATA{AT} : 1222579 292 : >>>> Target Intron 1 >>>> {r}TyrThrAsnGluTrpTyrLeuIle : 299 71 bp {!}|||.!!::!:!!|||||| !:!! ++ ++{e}TyrAlaSerLysTrpTyrGluLeu 1222578 : gt.........................ag{T}TACGCTTCTAAATGGTACGAACTA : 1222484 300 : SerLysLysSerLysIleLeuLeuLysPheMetMetLeuArgCysIleLysProSe : 318 !! !|||.!!:!!! |||:!! ! |||...:!!|||! !|||::!|||!! ProValLysGlyGlnLysLeuIleTyrThrMetGlnMetArgSerIleArgProCy 1222483 : CCGGTAAAAGGGCAAAAGTTGATTTACACGATGCAAATGAGGTCCATACGGCCATG : 1222427 319 : rValLeuThrAlaGlyGlyLeuTyrIleMetAsnTyrGluAsnTyrGlyIle : 335 !:!!|||||||||||||||:!!:!! |||||| !|||!:!!:!|||||| sIleLeuThrAlaGlyGlyValHisGluMetAsnIleGluSerPheGlyIle 1222426 : TATATTAACAGCAGGAGGAGTGCATGAGATGAACATCGAGAGTTTCGGAATA : 1222374 vulgar: NvOr172PSE 254 335 . KQ414851.1 1222687 1222373 - 166 M 36 108 S 0 2 5 0 2 I 0 67 3 0 2 S 1 1 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222374 1222687 166 - . gene_id 1 ; sequence NvOr172PSE ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1222578 1222687 . - . KQ414851.1 exonerate:protein2genome:local exon 1222578 1222687 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1222576 1222577 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1222507 1222577 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1222507 1222508 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1222374 1222506 . - . KQ414851.1 exonerate:protein2genome:local exon 1222374 1222506 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222374 1222687 166 - . alignment_id 1 ; Query NvOr172PSE ; Align 1222688 255 108 ; Align 1222506 292 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr172PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 88 -> 181 Target range: 1243884 -> 1243605 89 : ThrIleLeuSerGluProArgValTyrLeuTyrAlaAlaGlyPheAlaPheSerGl : 107 ||||||||| !...! ! !! ! !|||!:! ! !..!.!. !||| ! ThrIleLeuValSerLeuSerGlyThrLeuPheTyrPheSerIleIlePheValLe 1243884 : actatactcGTCTCTCTTTCAGGTACTTTGTTCTATTTCTCGATAATATTCGTATT : 1243830 108 : nValSerMetValProValIleLeuAspTyrIleTrpProLeuAsnGluSerArgP : 126 ! !! !!:!::!!||| !||||||||| !:!!! ||||||||||||!!!||| uPheProLeuIleProProIleLeuAspValValSerProLeuAsnGluThrArgS 1243829 : ATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGAGACTCGAT : 1243773 127 : roLysIleLeuIleValHisAlaGluTyrIleIleAspProLeuGlnTyrTyrPhe : 144 !!::!||| :::::: :::|||:!:.!!||| ::: :::::: erArgIleGluValIleLysLeuGlnTyrLeuPheAspMetGluLysAsnPheTyr 1243772 : CTCGGATAGaagtaataaaattgcaataccTGTTCGACAtggagaagaatttttat : 1243719 145 : GluLeuTyrGlyAlaTyrCysIleLeuThrPheValAsnLeuThrValLeuIleSe : 163 ...||||||! ! ! ! !! ! !:!!|||:!!!.!:!!! !|||:!!|||!! SerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMetValIleIleTh 1243718 : tcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCAC : 1243662 164 : rIleAspThrAlaPheSerSerIleValTyrGlnAsnLeuGlyValPheSerIle : 181 !||||||.!! !!:! ! !|||:!!:!!!!.!..! !|||:!!|||:!!:!! rIleAspAlaLeuTyrValValIleIleHisHisThrCysGlyLeuPheAlaVal 1243661 : TATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCTGTT : 1243606 vulgar: NvOr172PSE 88 181 . KQ414851.1 1243884 1243605 - 128 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243884 128 - . gene_id 2 ; sequence NvOr172PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243884 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243884 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243884 128 - . alignment_id 2 ; Query NvOr172PSE ; Align 1243885 89 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr172PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 291 -> 333 Target range: 1228545 -> 1228419 292 : TyrThrAsnGluTrpTyrLeuIleSerLysLysSerLysIleLeuLeuLysPheMe : 310 |||:!!::! !|||||| !:!!||| !|||! !:!! !:!!:!! ! .!.|| TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 311 : tMetLeuArgCysIleLysProSerValLeuThrAlaGlyGlyLeuTyrIleMetA : 329 |...:!!|||..!:!!||||||!!!:!!||||||||||||||||||||| !|||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 330 : snTyrGluAsnTyr : 333 || ||||||!:! snMetGluAsnPhe 1228433 : ACATGGAGAACTTT : 1228420 vulgar: NvOr172PSE 291 333 . KQ414851.1 1228545 1228419 - 117 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228420 1228545 117 - . gene_id 3 ; sequence NvOr172PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228420 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228420 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228420 1228545 117 - . alignment_id 3 ; Query NvOr172PSE ; Align 1228546 292 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr172PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 291 -> 333 Target range: 1233381 -> 1233255 292 : TyrThrAsnGluTrpTyrLeuIleSerLysLysSerLysIleLeuLeuLysPheMe : 310 |||:!!::! !|||||| !:!! !! !|||! !:!! !:!!:!! ! || TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMe 1233381 : TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGAT : 1233327 311 : tMetLeuArgCysIleLysProSerValLeuThrAlaGlyGlyLeuTyrIleMetA : 329 |...:!!|||..!:!!||||||!!!|||||||||||||||||||||||| !|||| tGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetA 1233326 : GCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGA : 1233270 330 : snTyrGluAsnTyr : 333 || ||||||!:! snMetGluAsnPhe 1233269 : ACATGGAGAACTTT : 1233256 vulgar: NvOr172PSE 291 333 . KQ414851.1 1233381 1233255 - 111 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233256 1233381 111 - . gene_id 4 ; sequence NvOr172PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1233256 1233381 . - . KQ414851.1 exonerate:protein2genome:local exon 1233256 1233381 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233256 1233381 111 - . alignment_id 4 ; Query NvOr172PSE ; Align 1233382 292 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr168 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 138 Query range: 128 -> 222 Target range: 1243884 -> 1243605 129 : ThrLeuThrIlePheTyrMetGlyTyrMetPheThrAlaCysIleSerPheValTh : 147 |||::: :!!! ! ! ||| !:!!||| ! !! |||! !|||||| ThrIleLeuValSerLeuSerGlyThrLeuPheTyrPheSerIleIlePheValLe 1243884 : actatactcGTCTCTCTTTCAGGTACTTTGTTCTATTTCTCGATAATATTCGTATT : 1243830 148 : rLeuProSerAlaValProLeuMetLeuAspLeuIleLeuProLeuAsnGluSerA : 166 !!!!||| !:!!|||! !!!:||||||:!!:!!! !||||||||||||!!!| uPhePro---LeuIleProProIleLeuAspValValSerProLeuAsnGluThrA 1243829 : ATTTCCA---TTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGAGACTC : 1243776 167 : rgGlyValAsnLeuCysTyrTyrAlaGluTyrPheIleAspGlnGlnLysTyrPhe : 184 ||..! !! :::|||.!..!!|||...:::||| ||| rgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspMetGluLysAsnPhe 1243775 : GATCTCGGATAGaagtaataaaattgcaataccTGTTCGACAtggagaagaatttt : 1243722 185 : IleTyrLeuLeuLeuHisThrPheIleCysValSerPheThrIleLeuIleValTh : 203 ||| :!!:!!||| ! ||| !! !.!.|||!!::!!:!!:!!! TyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMetValIleIl 1243721 : tattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAAT : 1243665 204 : rAlaValAspSerThrPheValSerIleValTyrHisAlaValGlyLeuPheAspI : 222 !.!!:!!|||:!! !!:!||| !|||:!!:!!|||.!! !|||||||||! !: eThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGlyLeuPheAlaV 1243664 : CACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCTG : 1243608 223 : le : 222 !! al 1243607 : TT : 1243606 vulgar: NvOr168 128 222 . KQ414851.1 1243884 1243605 - 138 M 21 63 G 1 0 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243884 138 - . gene_id 1 ; sequence NvOr168 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243884 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243884 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243884 138 - . alignment_id 1 ; Query NvOr168 ; Align 1243885 129 63 ; Align 1243822 151 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr168 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 131 -> 222 Target range: 1229503 -> 1229230 132 : IlePheTyrMetGlyTyrMetPheThrAlaCysIleSerPheValThrLeuProSe : 150 :!!|||! !:!:! ! !:!:.!! !||| ! !|||:!! !:!!|||! ValPheSerLeuAspAlaLeuLeuPheAlaMetCysValPheLeuLeuValProLe 1229503 : GTATTTTCCTTAGATGCTTTACTCTTCGCAATGTGTGTTTTCTTGCTGGTCCCATT : 1229449 151 : rAlaValProLeuMetLeuAspLeuIleLeuProLeuAsnGluSerArgGlyValA : 169 ! !! !||| ||||||:!!:!!||||||! !||||||!!!||| ! !. uPheGlyPro---AlaLeuAspIleValLeuProSerAsnGluThrArgProArgG 1229448 : GTTTGGTCCA---GCCCTGGACATCGTCCTTCCATCAAATGAAACTAGGCCACGGC : 1229395 170 : snLeuCysTyrTyrAlaGluTyrPheIle<->AspGlnGlnLysTyrPheIleTyr : 186 !.! ! !:! !.!.!.|||.!.||| |||||| ! ! ||||||.!!||| lnGlnLeuPheArgValAsnTyrIleIlePheAspGlnAlaAspTyrPhePheTyr 1229394 : AACAACTGTTCAGAGTTAACTATATAATTTTCGACCAAGCAGACTATTTTTTCTAC : 1229341 187 : LeuLeuLeuHisThrPheIleCysValSerPheThrIleLeuIleValThrAlaVa : 205 :!!! !:!!!!. !||| |||..!! ! !! !:!!:!! !:!!! !.!!|| ValTyrIleGlnLeuPheTrpCysThrIleValLeuValMetAlaIleIleThrVa 1229340 : GTGTATATTCAATTGTTTTGGTGTACAATCGTTCTTGTAATGGCCATTATCACCGT : 1229284 206 : lAspSerThrPheValSerIleValTyrHisAlaValGlyLeuPheAspIle : 222 ||||||| !!:!:!!! !|||:!!||||||||| !|||:!!|||! !||| lAspSerLeuTyrMetIleIleIleTyrHisAlaSerGlyMetPheAlaIle 1229283 : AGATTCATTGTACATGATCATAATTTACCATGCCAGCGGAATGTTCGCTATA : 1229231 vulgar: NvOr168 131 222 . KQ414851.1 1229503 1229230 - 127 M 22 66 G 1 0 M 24 72 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229231 1229503 127 - . gene_id 2 ; sequence NvOr168 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229231 1229503 . - . KQ414851.1 exonerate:protein2genome:local exon 1229231 1229503 . - . insertions 3 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1229231 1229503 127 - . alignment_id 2 ; Query NvOr168 ; Align 1229504 132 66 ; Align 1229438 155 72 ; Align 1229363 179 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr168 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 154 -> 222 Target range: 1224237 -> 1224030 155 : MetLeuAspLeuIleLeuProLeuAsnGluSerArgGlyValAsnLeuCysTyrTy : 173 :!:||||||:!!:!! !||||||||||||!!!||| ! !!..|||! ! ValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLeuLeuLeuPr 1224237 : GTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCC : 1224183 174 : rAlaGluTyr<->PheIleAspGlnGlnLysTyrPheIleTyrLeuLeuLeuHisT : 191 !.!...||| |||||||||:!! ! :!!:!!||| ! !:!! !!!!||| oValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValAsnPheHisL 1224182 : AGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAATTTTCACC : 1224126 192 : hrPheIleCysValSerPheThrIleLeuIleValThrAlaValAspSerThrPhe : 209 !!:!! ! !!|||! !! ! ! :!!!!::!!! !|||||||||! ! !!:! euTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAspMetLeuTyr 1224125 : TATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATATGTTATAC : 1224072 210 : ValSerIleValTyrHisAlaValGlyLeuPheAspIle : 222 :!!!!!|||:!!!:!||| ! !|||||||||! :!: IleThrIleIlePheHisLeuCysGlyLeuPheAlaVal 1224071 : ATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: NvOr168 154 222 . KQ414851.1 1224237 1224030 - 106 M 22 66 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224237 106 - . gene_id 3 ; sequence NvOr168 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224237 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224237 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224237 106 - . alignment_id 3 ; Query NvOr168 ; Align 1224238 155 66 ; Align 1224169 177 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr168 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 131 -> 222 Target range: 1234338 -> 1234065 132 : IlePheTyrMetGlyTyrMetPheThrAlaCysIleSerPheValThrLeuProSe : 150 :!:|||!:! ! ! :!:.!.:!! ! :!! !|||:!! !:!!|||! ValPhePheSerAspThrLeuLeuSerPheMetValValPheLeuLeuValProLe 1234338 : GTGTTCTTCTCAGATACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATT : 1234284 151 : rAlaValProLeuMetLeuAspLeuIleLeuProLeuAsnGluSerArgGlyValA : 169 !!.! !!||| .!.||||||:!!:!!|||||||||||||||!!!||| ! !. uValPhePro---PheLeuAspValValLeuProLeuAsnGluThrArgProArgG 1234283 : AGTTTTTCCA---TTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGAC : 1234230 170 : snLeuCysTyrTyrAlaGluTyr<->PheIleAspGlnGlnLysTyrPheIleTyr : 186 !.! ! ! !:! !.!.!.||| !:!.!!|||:!! ! ! ||||||.!! ! lnGlnGlyPheArgValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSer 1234229 : AGCAAGGATTCAGAGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGC : 1234176 187 : LeuLeuLeuHisThrPheIleCysValSerPheThrIleLeuIleValThrAlaVa : 205 :!!! !!!!!!. ! ! !!!.! ! !!..!:!!:!!|||:!!! !.!!|| ValTyrPheGlnLeuAlaTrpGlyAlaValValValValMetIleIleIleThrVa 1234175 : GTGTACTTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGT : 1234119 206 : lAspSerThrPheValSerIleValTyrHisAlaValGlyLeuPheAspIle : 222 ||||||| !!:!:!!! !|||:!!:!!|||||| !|||:!!|||! !:!: lAspSerLeuTyrMetIleIleIleHisHisAlaSerGlyMetPheAlaVal 1234118 : AGACTCGTTGTACATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTG : 1234066 vulgar: NvOr168 131 222 . KQ414851.1 1234338 1234065 - 103 M 22 66 G 1 0 M 22 66 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234066 1234338 103 - . gene_id 4 ; sequence NvOr168 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234066 1234338 . - . KQ414851.1 exonerate:protein2genome:local exon 1234066 1234338 . - . insertions 3 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1234066 1234338 103 - . alignment_id 4 ; Query NvOr168 ; Align 1234339 132 66 ; Align 1234273 155 66 ; Align 1234204 177 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr173 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 123 -> 216 Target range: 1234341 -> 1234065 124 : ValLeuPheTyrThrValTyrValPheLeuAlaTrpValThrCysAsnPheValPr : 142 :!!:!!|||!:!:!!! ! :!!.!.! ! ! !|||..!! ! .!.||||| IleValPhePheSerAspThrLeuLeuSerPheMetValValPheLeuLeuValPr 1234341 : ATCGTGTTCTTCTCAGATACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCC : 1234287 143 : oPheIleProProLeuLeuAspIleLeuLeuProLeuGluAsnGlyThrHisAspL : 161 |!!.:!! !|||!!!||||||:!!:!!||||||||| |||! !|||!.. ! oLeuValPheProPheLeuAspValValLeuProLeu---AsnGluThrArgProA 1234286 : ATTAGTTTTTCCATTCTTGGATGTCGTCCTTCCGTTA---AATGAAACTCGACCAC : 1234233 162 : euValTyrProPheTyrAlaAspTyrValPhePheLysGlnThrAspTyrHisTyr : 179 ! ! ! !||| !.!:!!|||:!!!:!||| ! :!!.!!|||||| !!:! rgGlnGlnGlyPheArgValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePhe 1234232 : GACAGCAAGGATTCAGAGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTC : 1234179 180 : GluSerCysLeuHisValPhePheValTyrPheGlyThrThrSerLeuPheAlaGl : 198 ... !! !!!!!!.:!! !!::! ! !!! !..!..!! !:!!.!. ! SerValTyrPheGlnLeuAlaTrpGlyAlaValValValValMetIleIleIleTh 1234178 : AGCGTGTACTTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCAC : 1234122 199 : yMetAspThrIleTyrValAlaThrValLysHisSerCysGlyLeuPheAlaIle : 216 !:!:|||:!!:!:|||:!! !! !:!! ! |||:!! !!|||:!!||||||:!: rValAspSerLeuTyrMetIleIleIleHisHisAlaSerGlyMetPheAlaVal 1234121 : CGTAGACTCGTTGTACATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTG : 1234066 vulgar: NvOr173 123 216 . KQ414851.1 1234341 1234065 - 103 M 31 93 G 1 0 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234066 1234341 103 - . gene_id 1 ; sequence NvOr173 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234066 1234341 . - . KQ414851.1 exonerate:protein2genome:local exon 1234066 1234341 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1234066 1234341 103 - . alignment_id 1 ; Query NvOr173 ; Align 1234342 124 93 ; Align 1234249 156 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr173 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 123 -> 216 Target range: 1229506 -> 1229230 124 : ValLeuPheTyrThrValTyrValPheLeuAlaTrpValThrCysAsnPheValPr : 142 :!!:!!|||! ! !! ! !:!!.!!!!!||| ! !..!! ! .!.||||| IleValPheSerLeuAspAlaLeuLeuPheAlaMetCysValPheLeuLeuValPr 1229506 : ATCGTATTTTCCTTAGATGCTTTACTCTTCGCAATGTGTGTTTTCTTGCTGGTCCC : 1229452 143 : oPheIleProProLeuLeuAspIleLeuLeuProLeuGluAsnGlyThrHisAspL : 161 |!!..!! !||| !|||||||||:!!|||||| ..!|||! !|||... ! oLeuPheGlyProAlaLeuAspIleValLeuPro---SerAsnGluThrArgProA 1229451 : ATTGTTTGGTCCAGCCCTGGACATCGTCCTTCCA---TCAAATGAAACTAGGCCAC : 1229398 162 : euValTyrProPheTyrAlaAspTyrValPhePheLysGlnThrAspTyrHisTyr : 179 ! ! ! ! !||| !.!:!!|||:!!.!!||| ! |||.!!|||||| !!:! rgGlnGlnLeuPheArgValAsnTyrIleIlePheAspGlnAlaAspTyrPhePhe 1229397 : GGCAACAACTGTTCAGAGTTAACTATATAATTTTCGACCAAGCAGACTATTTTTTC : 1229344 180 : GluSerCysLeuHisValPhePheValTyrPheGlyThrThrSerLeuPheAlaGl : 198 ! !! !:!!!!.:!!|||!:: ! .!!! ! !..!! ! !.!! ! TyrValTyrIleGlnLeuPheTrpCysThrIleValLeuValMetAlaIleIleTh 1229343 : TACGTGTATATTCAATTGTTTTGGTGTACAATCGTTCTTGTAATGGCCATTATCAC : 1229287 199 : yMetAspThrIleTyrValAlaThrValLysHisSerCysGlyLeuPheAlaIle : 216 !:!:|||:!!:!:|||:!! !! !:!! ! |||:!! !!|||:!!||||||||| rValAspSerLeuTyrMetIleIleIleTyrHisAlaSerGlyMetPheAlaIle 1229286 : CGTAGATTCATTGTACATGATCATAATTTACCATGCCAGCGGAATGTTCGCTATA : 1229231 vulgar: NvOr173 123 216 . KQ414851.1 1229506 1229230 - 102 M 30 90 G 1 0 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229231 1229506 102 - . gene_id 2 ; sequence NvOr173 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229231 1229506 . - . KQ414851.1 exonerate:protein2genome:local exon 1229231 1229506 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1229231 1229506 102 - . alignment_id 2 ; Query NvOr173 ; Align 1229507 124 90 ; Align 1229417 155 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr179 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 332 -> 377 Target range: 1228545 -> 1228410 333 : TyrAsnAsnAspTrpTyrLysAlaSerAlaArgValArgIlePheValPheMetIl : 351 |||::!::! |||||||||!.!||||||!:! !!!:! ! ! :!!!:!|||!! TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 352 : eMetGlnArgThrLeuLysProGluAsnLeuThrAlaGlySerIleLeuIleLeuS : 370 :... !|||.!!||||||||| ! !||||||||||||.!!:!:! ! !:!!! tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 371 : erIleGluAsnPheAlaThrIle : 377 :!!!:||||||||||||!.!:!! snMetGluAsnPheAlaAsnVal 1228433 : ACATGGAGAACTTTGCAAACGTT : 1228411 vulgar: NvOr179 332 377 . KQ414851.1 1228545 1228410 - 105 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1228545 105 - . gene_id 1 ; sequence NvOr179 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228411 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1228545 105 - . alignment_id 1 ; Query NvOr179 ; Align 1228546 333 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr167 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 150 -> 219 Target range: 1224237 -> 1224030 151 : IleLeuAsnIleIleAlaProLeuAsnGluSerArgProThrLysValLeuCysPh : 169 :!!|||:!!:!!:!!|||||||||||||||!!!|||||| !!:!:!!||| ! ValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLeuLeuLeuPr 1224237 : GTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCC : 1224183 170 : eTyrAlaGluTyrPheIleAspGlnGluGluTyrTyrTyrGlnLeuLeuPheGlnT : 188 !::! ! |||||||||:!! ! |||:!!!:!|||...:!! !|||!!. oValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValAsnPheHisL 1224182 : AGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAATTTTCACC : 1224126 189 : hrPheIleGlyValMetSerThrValPheIleAsnAlaThrValAspThrLeuTyr : 206 !!:!! !.!!|||!!:||| !! !.!.!!:! !.!!||||||! !|||||| euTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAspMetLeuTyr 1224125 : TATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATATGTTATAC : 1224072 207 : ValIleCysAlaHisHisSerAspGlyLeuPheAsnIle : 219 :!!! ! ! ! !||| ! !||||||||| :!: IleThrIleIlePheHisLeuCysGlyLeuPheAlaVal 1224071 : ATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: NvOr167 150 219 . KQ414851.1 1224237 1224030 - 130 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224237 130 - . gene_id 1 ; sequence NvOr167 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224237 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224237 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224237 130 - . alignment_id 1 ; Query NvOr167 ; Align 1224238 151 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr167 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 129 Query range: 150 -> 219 Target range: 1234272 -> 1234065 151 : IleLeuAsnIleIleAlaProLeuAsnGluSerArgProThrLysValLeuCysPh : 169 .!!|||:!!:!!:!! !||||||||||||!!!|||||| !:!! ! !! ! PheLeuAspValValLeuProLeuAsnGluThrArgProArgGlnGlnGlyPheAr 1234272 : TTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAGGATTCAG : 1234218 170 : eTyrAlaGluTyrPheIleAspGlnGluGluTyrTyrTyrGlnLeuLeuPheGlnT : 188 ! ! ! !:!.!!|||:!!! !!!:|||!:!!:!...:!!! !|||||| gValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyrPheGlnL 1234217 : AGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAAT : 1234161 189 : hrPheIleGlyValMetSerThrValPheIleAsnAlaThrValAspThrLeuTyr : 206 ! ! |||!.!:!: !..!|||.!.|||! !|||||||||:!!|||||| euAlaTrpGlyAlaValValValValMetIleIleIleThrValAspSerLeuTyr 1234160 : TGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTCGTTGTAC : 1234107 207 : ValIleCysAlaHisHisSerAspGlyLeuPheAsnIle : 219 :!!||| !||||||:!!..!|||:!!||| !:!: MetIleIleIleHisHisAlaSerGlyMetPheAlaVal 1234106 : ATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTG : 1234066 vulgar: NvOr167 150 219 . KQ414851.1 1234272 1234065 - 129 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234066 1234272 129 - . gene_id 2 ; sequence NvOr167 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234066 1234272 . - . KQ414851.1 exonerate:protein2genome:local exon 1234066 1234272 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234066 1234272 129 - . alignment_id 2 ; Query NvOr167 ; Align 1234273 151 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr167 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 112 -> 270 Target range: 1240151 -> 1239541 113 : GlnLeuSerLeuGlnArgAlaAlaSerAsnGlyGlnLeuMetThrIleIleTyrSe : 131 :::|||:::|||:::::: ...||| :::::: ! !||||||! ArgLeuAsnLeuArgLysIleLeuLysAsnGlu***MetIleAspTyrIleTyrTy 1240151 : agactgaatttaaggaaaatattgaaaaatgaataaatgatCGATTACATATATTA : 1240097 132 : rValTyrValAsnPheAlaGlyValGlyPheAlaThrLeuProGlyThrLeu<->P : 149 !:!!! ||| !!!. !...||| ||| ||| !! ! ::: | rIleSerValValLeuPheSerValLeuPheIlePheLeuValValProIlePheP 1240096 : CATTTCAGTCGTTTTATTTTCcgttttgttcatttttctggTGGTTCcgatttttc : 1240040 150 : roThrIleLeuAsnIleIleAlaProLeuAsnGluSerArgProThrLysValLeu : 167 || :::|||:!!|||:!! !||||||||||||!!!||| !! ::: ::: roProLeuLeuAspIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIle 1240039 : ctcctcttctggACATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaata : 1239986 168 : CysPheTyrAlaGluTyrPheIleAspGlnGluGluTyrTyrTyrGlnLeuLeuPh : 186 ! ! .!!||||||::!!!:||| ! ! !! !|| PheLysValAsnTyrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPh 1239985 : ttcaaagttaaTTACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTT : 1239929 187 : eGlnThrPheIleGlyValMetSerThrValPheIleAsnAlaThrValAspThrL : 205 |!!. !! ! !..!!!:!!! !! !.!. ! !!:! !!!: !: eHisLeuSerTrpThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuI 1239928 : TCACTTGTCTTGGACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGA : 1239872 206 : euTyrValIleCysAlaHisHisSerAspGlyLeuPheAsnIleValSerTyrArg : 223 !!||||||:!! ! !||||||!!!..!||||||||| !:!:!.!... leTyrValLeuLeuIleHisHisThrSerGlyLeuPheAlaValAlaGly***Ile 1239871 : TATACGTCCTTCTTATTCATCATACCAGCGGTCTGTTTGCTGTGGCTGggtaaata : 1239818 224 : PheGlnLysAlaPheAsnLysSerGlnGluArgTyrGln >>>> Target Int : 237 |||::: .!!! !||| ::::::|||... 133 b PheLysHisThrCysAsnIleAsnGluGluAsnIleIle-+ 1239817 : ttcaaacataCCTGTAacataaacgaagaaaatataattat............... : 1239774 238 : ron 1 >>>> ValLysSerArgAsnLeuValAlaAlaLysAsnLeuAspGluGl : 251 p :!!:!!|||!.!:!!|||:!!!.!!.!|||||||||!!::::|| ++IleGlnSerAsnAspLeuIleValGlyLysAsnLeuGluAspGl 1239773 : ..........agATACAGAGTAATGATTTAATTGTGGGAAAGAATTTAGAAgacga : 1239601 252 : uIleHisGluTyrValLeuThrAlaIleAsnIleHisAsnGluSerIleGluPheI : 270 ||||:::||| ..!:!!:!!! !|||||||||:!!||||||! !: uIleTyrGluLysPheLysArgCysValAspThrHisAsnGluAlaIleGluCysV 1239600 : aatttacgaaaaattcaaacgatgCGTCGACACACACAACGAAGCTATTGAGTGTg : 1239544 271 : le : 270 :: al 1239543 : ta : 1239542 vulgar: NvOr167 112 270 . KQ414851.1 1240151 1239541 - 128 M 36 108 G 0 3 M 88 264 5 0 2 I 0 129 3 0 2 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239542 1240151 128 - . gene_id 3 ; sequence NvOr167 ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1239777 1240151 . - . KQ414851.1 exonerate:protein2genome:local exon 1239777 1240151 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1239775 1239776 . - . intron_id 1 ; splice_site "at" KQ414851.1 exonerate:protein2genome:local intron 1239644 1239776 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1239644 1239645 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1239542 1239643 . - . KQ414851.1 exonerate:protein2genome:local exon 1239542 1239643 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239542 1240151 128 - . alignment_id 3 ; Query NvOr167 ; Align 1240152 113 108 ; Align 1240041 149 264 ; Align 1239644 237 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr167 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 147 -> 219 Target range: 1243818 -> 1243605 148 : LeuProThrIleLeuAsnIleIleAlaProLeuAsnGluSerArgProThrLysVa : 166 :!!||| !!||||||:!!:!!:!!:!!||||||||||||!!!||| :!!::!:! IleProProIleLeuAspValValSerProLeuAsnGluThrArg---SerArgIl 1243818 : ATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGAGACTCGA---TCTCGGAT : 1243767 167 : lLeuCysPheTyrAlaGluTyrPheIleAspGlnGluGluTyrTyrTyrGlnLeuL : 185 ! ... :::|||.!..!!|||...|||::: :::|||...||| eGluValIleLysLeuGlnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuT 1243766 : AGaagtaataaaattgcaataccTGTTCGACAtggagaagaatttttattcattat : 1243710 186 : euPheGlnThrPheIleGlyValMetSerThrValPheIleAsnAlaThrValAsp : 203 !! ! ||| ! !! !.!.! !|||:!!.!.:!!! !|||:!!||| yrValTyrThrGlyTrpCysSerPheMetThrMetMetValIleIleThrIleAsp 1243709 : acGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGAC : 1243656 204 : ThrLeuTyrValIleCysAlaHisHisSerAspGlyLeuPheAsnIle : 219 .!!|||||||||:!! ! !||||||!!! !||||||||| !:!! AlaLeuTyrValValIleIleHisHisThrCysGlyLeuPheAlaVal 1243655 : GCGTTATATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCTGTT : 1243606 vulgar: NvOr167 147 219 . KQ414851.1 1243818 1243605 - 122 M 15 45 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243818 122 - . gene_id 4 ; sequence NvOr167 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243818 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243818 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243818 122 - . alignment_id 4 ; Query NvOr167 ; Align 1243819 148 45 ; Align 1243774 164 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr167 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 151 -> 219 Target range: 1229434 -> 1229230 152 : LeuAsnIleIleAlaProLeuAsnGluSerArgProThrLysValLeuCysPheTy : 170 |||:!!|||:!! !|||! !||||||!!!|||||| !:!! !|||! ! LeuAspIleValLeuProSerAsnGluThrArgProArgGlnGlnLeuPheArgVa 1229434 : CTGGACATCGTCCTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGT : 1229380 171 : rAlaGluTyrPheIleAspGlnGluGluTyrTyrTyrGlnLeuLeuPheGlnThrP : 189 ! ! ! .!!.!!||||||! !!!:|||!:!!:! ! :!!! !.!!||| !| lAsnTyrIleIlePheAspGlnAlaAspTyrPhePheTyrValTyrIleGlnLeuP 1229379 : TAACTATATAATTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAATTGT : 1229323 190 : heIleGlyValMetSerThrValPheIleAsnAlaThrValAspThrLeuTyrVal : 207 || !!..!!!: ! !|||.!. !! ! !|||||||||:!!||||||:!! heTrpCysThrIleValLeuValMetAlaIleIleThrValAspSerLeuTyrMet 1229322 : TTTGGTGTACAATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTACATG : 1229269 208 : IleCysAlaHisHisSerAspGlyLeuPheAsnIle : 219 ||| !:!!|||:!!..!|||:!!||| !||| IleIleIleTyrHisAlaSerGlyMetPheAlaIle 1229268 : ATCATAATTTACCATGCCAGCGGAATGTTCGCTATA : 1229231 vulgar: NvOr167 151 219 . KQ414851.1 1229434 1229230 - 113 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229231 1229434 113 - . gene_id 5 ; sequence NvOr167 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229231 1229434 . - . KQ414851.1 exonerate:protein2genome:local exon 1229231 1229434 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229231 1229434 113 - . alignment_id 5 ; Query NvOr167 ; Align 1229435 152 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr173 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 320 -> 383 Target range: 292377 -> 292566 321 : LysIleIleAspSerSerAspLysValPheTyrSerThrTyrTyrSerAspTrpTyrL : 340 ::!:!::!: !!..!.!!..!:!!:!! :!!:!!:!!||| !!!!!!!:|||||| ArgValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrA 292378 : CGAGTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACA : 292435 341 : euIleSerArgAsnGluArgGlnLeuThrLysIleIleLeuAlaArgSerLeuTyrPr : 359 !:!: !!|||...:!! !!:: !! ! :!::!:||||||! !!!! !:!!|| snLeuProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisPr 292436 : ATCTGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCC : 292492 360 : oCysGlnLeuThrAlaGlyLysIleSerValLeuSerMetGluThrPheGlyAlaLeu : 378 | !:!!||||||||||||||||||! !|||||||||:!!.!.||||||||||||:!! oIleLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThrPheGlyAlaVal 292493 : GATCAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTA : 292549 379 : MetLysThrSerMet : 383 :!!:!!!.!:!: ArgGluSerLysLeu 292550 : CGTGAATCAAAACTA : 292566 vulgar: NvOr173 320 383 . KQ414889.1 292377 292566 + 115 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292378 292566 115 + . gene_id 1 ; sequence NvOr173 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292378 292566 . + . KQ414889.1 exonerate:protein2genome:local exon 292378 292566 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292378 292566 115 + . alignment_id 1 ; Query NvOr173 ; Align 292378 321 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr180 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 320 -> 393 Target range: 214851 -> 215070 321 : ValIleGlnSerCysAspAspIleGlnLysThrAlaTyrAspIleAspTrpHisArgI : 340 :!!:!!|||..!||| ! ! :!! !:!!..!:!!||| |||!!:|||:!!|||: MetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrArgL 214852 : ATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACCGAT : 214909 341 : leSerSerArgThrArgIlePheValLeuMetIleMetGlnArgThrLeuLysProVa : 359 !: !!.!!!.!! !!:!:!!! ! !:!!:!!|||||| !! !:!! !..! !!|| euProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSerVa 214910 : TGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATCCGT : 214966 360 : lHisLeuThrAlaGlyAsnMetMetIleLeuSerIleGlnAsnPheGlyThrIleLeu : 378 | ! !!!|||||||||||||||:!: !|||||||||...!.!|||.!!!:!:!! ! lLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerValSer 214967 : CAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTAAGT : 215023 379 : LysSerAlaTrpSerPheGlyThrIleLeuLeuThrThrGlnLys : 393 ! !.! ! !!!!. ||||||... ... :::||| IleLysGlnLeuProLeuTyrThrIlePheThrAsnGluLysLys 215024 : ATCAAACAACTTCCATTATacacaattttcacaaatgaaaaaaaa : 215070 vulgar: NvOr180 320 393 . KQ414889.1 214851 215070 + 105 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214852 215070 105 + . gene_id 1 ; sequence NvOr180 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214852 215070 . + . KQ414889.1 exonerate:protein2genome:local exon 214852 215070 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214852 215070 105 + . alignment_id 1 ; Query NvOr180 ; Align 214852 321 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr180 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 306 -> 377 Target range: 224445 -> 224658 307 : PheValIleTyrLeuPhePheMetAsnTrpSerGlyGluGlnValIleGlnSerCysA : 326 ||| ||| ||| ! :!!!::! ! !..!! ! !!.!!! ...|||: PheLysIleIleLeuHisHisTyrHisTyrPheLeuSerLeuPhePheProGlnCysG 224446 : tttaaaattattcttcacCACTACCACTATTTTTTATCGCTATTTTTTCCtcagtgtg : 224503 327 : spAspIleGlnLysThrAlaTyrAspIleAspTrpHisArgIleSerSerArgThrAr : 345 :: ||| ::!..!:!!||| |||||||||:!!|||:!:!!!.!!!.!! !!: luLysIleGlyGlnValSerTyrMetIleAspTrpTyrArgLeuThrGlyAsnLysLy 224504 : aaaaaattggacaAGTGTCGTACATGATCGACTGGTATCGGTTGACTGGAAATAAGAA : 224560 346 : gIlePheValLeuMetIleMetGlnArgThrLeuLysProValHisLeuThrAlaGly : 364 !:!!! ! !:!!:!!|||!!: !! !:!! !... !!:!! ! |||||||||||| sLeuCysCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAlaGly 224561 : ACTATGCTGCATTCTGATAATCGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGA : 224617 365 : AsnMetMetIleLeuSerIleGlnAsnPheGlyThrIle : 377 ||||||:!: !|||!!!:!! !.!|||||| !:!! AsnMetValGluLeuCysLeuThrThrPheGlyAspVal 224618 : AACATGGTCGAACTGTGTCTAACCACTTTCGGTGACGTA : 224658 vulgar: NvOr180 306 377 . KQ414889.1 224445 224658 + 102 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224446 224658 102 + . gene_id 2 ; sequence NvOr180 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224446 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224446 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224446 224658 102 + . alignment_id 2 ; Query NvOr180 ; Align 224446 307 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 295 -> 391 Target range: 3000 -> 3428 296 : LysPheValArgIleMetAlaPhePheValGlyLeuIleIleHisLeuLeuTyrLeuAsnTr : 316 :!!|||!.!!:! ! .!!|||.!!||| !! !:!::!!|||:!!|||||||||!.! GluPheAlaLysAspCysThrPheIleValIleGlnLeuValHisIleLeuTyrLeuThrLe 3001 : GAGTTTGCCAAGGATTGCACATTTATCGTGATTCAATTGGTACACATACTTTACCTAACTCT : 3061 317 : pValGlyGlnLysIleIleAspSerSerGluAspValPheLeuAla{Al} >>>> Targe : 332 !|||||| :!:||||||:!!!:!|||!!::!!||| !:!!{ } uGlnGlyGlnPheValIleAspAlaAsnGluGluIlePheGluSer{Il}++ 3062 : TCAAGGACAATTCGTGATCGACGCGAACGAGGAAATCTTCGAATCG{AT}gt.......... : 3113 333 : t Intron 1 >>>> {a}TyrCysSerLysTrpTyrValIleSerThrSerAlaArgAla : 346 62 bp {!}||| !!:!! !|||||| !! !..!! !!!!.!!!:!:!! ++{e}TyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSer 3114 : ...............ag{A}TACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATCG : 3213 347 : PheIleLysIleIleMetValArgAlaLeuGluProCysArgLeuThrAlaGlyGlyLeuSe : 367 !!..!! !:!! :!: !!.!..!|||... !! !!:!:!!|||||||||||||||! LeuPheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuIl 3214 : TTGTTTGTATTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAAT : 3276 368 : rThrLeuCysMetGluSerPheGlyIle >>>> Target Intron 2 >>>> LeuIl : 378 !|||:!! !:!!:!!||||||..! 78 bp :!!:! eThrMetAsnLeuGlnSerPheSerGlu++ ++IleVa 3277 : TACAATGAACTTGCAAAGTTTCTCAGAGgt.........................agATTGT : 3387 379 : eLysThrSerValSerTyrPheThrValPheLeuSerVal : 391 !||||||||||||||||||!:!! !|||.!. !|||||| lLysThrSerValSerTyrTyrMetValLeuLysSerVal 3388 : AAAGACGTCTGTCTCGTACTACATGGTACTGAAATCCGTA : 3428 vulgar: NvOr175 295 391 . KQ414921.1 3000 3428 + 160 M 36 108 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 44 132 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 3001 3428 160 + . gene_id 1 ; sequence NvOr175 ; gene_orientation + KQ414921.1 exonerate:protein2genome:local cds 3001 3110 . + . KQ414921.1 exonerate:protein2genome:local exon 3001 3110 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 3111 3112 . + . intron_id 1 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 3111 3172 . + . intron_id 1 KQ414921.1 exonerate:protein2genome:local splice3 3171 3172 . + . intron_id 0 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 3173 3305 . + . KQ414921.1 exonerate:protein2genome:local exon 3173 3305 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 3306 3307 . + . intron_id 2 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 3306 3383 . + . intron_id 2 KQ414921.1 exonerate:protein2genome:local splice3 3382 3383 . + . intron_id 1 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 3384 3428 . + . KQ414921.1 exonerate:protein2genome:local exon 3384 3428 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 3001 3428 160 + . alignment_id 1 ; Query NvOr175 ; Align 3001 296 108 ; Align 3174 333 132 ; Align 3384 377 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr173 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 121 -> 217 Target range: 1605 -> 1887 122 : TyrLeuValLeuPheTyrThrValTyrValPheLeuAlaTrpValThrCysAsnPheValPr : 142 |||:!!||| !!:!! ! !||| !!!.!.!!:!!..! :!! !! ! ! ..!|| TyrIleValLysTyrSerIleValAsnAlaIleValCysValIleLeuPheValSerThrPr 1606 : TACATTGTCAAATATTCGATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCC : 1666 143 : oPheIleProProLeuLeuAspIleLeuLeuProLeuGluAsnGlyThrHisAspLeuValT : 163 | ! ! !|||! !:!!|||||||||||||||||| :!!|||! !:!!!..|||:!!!.!| oValThrProHisIleLeuAspIleLeuLeuPro---LysAsnGluSerArgAspValAlaT 1667 : GGTGACACCGCATATTTTGGACATTTTACTACCG---AAAAACGAGTCACGAGACGTAGCGT : 1726 164 : yrProPheTyrAlaAspTyrValPhePheLysGlnThrAspTyrHisTyrGluSerCysLeu : 183 || .!!||| !!! !||| !||| ! ! :!! ! ! ||| !! ! ! ! ! ! yr---IleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThr 1727 : AC---ATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACG : 1783 184 : HisValPhePheValTyrPheGlyThrThrSerLeuPheAlaGlyMetAspThrIleTyrVa : 204 |||:!! ! !||| !.!.! !..! !! !:!!!:! !!.! ||||||! !|||:! HisMetAlaSerValIleLeuValValPheTyrValTyrPheAlaCysAspThrSerTyrIl 1784 : CACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACAT : 1846 205 : lAlaThrValLysHisSerCysGlyLeuPheAlaIleThr : 217 ! !..!|||:!!|||.!!|||||||||!!.|||:!::!! eTyrValValGlnHisGlyCysGlyLeuLeuAlaValSer 1847 : ATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCC : 1887 vulgar: NvOr173 121 217 . KQ414921.1 1605 1887 + 101 M 32 96 G 1 0 M 9 27 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1606 1887 101 + . gene_id 1 ; sequence NvOr173 ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1606 1887 . + . KQ414921.1 exonerate:protein2genome:local exon 1606 1887 . + . insertions 0 ; deletions 2 KQ414921.1 exonerate:protein2genome:local similarity 1606 1887 101 + . alignment_id 1 ; Query NvOr173 ; Align 1606 122 96 ; Align 1702 155 27 ; Align 1729 165 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr168 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 140 -> 229 Target range: 1638 -> 1905 141 : AlaCysIleSerPheValThrLeuProSerAlaValProLeuMetLeuAspLeuIleLeuPr : 161 !.!|||:!!! !.!. !!..!! ! !! !!!.!..!|||! !!!:||||||:!!:!!||||| ValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuPr 1639 : GTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACC : 1699 162 : oLeuAsnGluSerArgGlyValAsnLeuCysTyrTyrAlaGluTyrPheIleAspGlnGlnL : 182 | !||||||||||||! !||| ! ! !||| ||| ! ||||||! !|||:!!!!.| oLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisL 1700 : GAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATA : 1762 183 : ysTyrPheIleTyrLeuLeuLeuHisThrPheIleCysValSerPheThrIleLeuIleVal : 202 ||||| !:!:|||:!!:!! !|||! ! ! :!! ! ! ..!.!!! !:!: ! ysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyr 1763 : AGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTAC : 1822 203 : ThrAlaValAspSerThrPheValSerIleValTyrHisAlaValGlyLeuPheAspIleLe : 223 !||| !|||!!!!:!!:!:!!! !:!!||| ! |||!.! !||||||!!.! !:!:! PheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSe 1823 : TTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTC : 1885 224 : uGluTyrArgMetArgAsn : 229 !! ::::::|||::: rGly***LysIleArgSer 1886 : CGGgtaaaaaattcgatcg : 1905 vulgar: NvOr168 140 229 . KQ414921.1 1638 1905 + 141 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1639 1905 141 + . gene_id 1 ; sequence NvOr168 ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1639 1905 . + . KQ414921.1 exonerate:protein2genome:local exon 1639 1905 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1639 1905 141 + . alignment_id 1 ; Query NvOr168 ; Align 1639 141 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr172PSE Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 266 -> 333 Target range: 3036 -> 3299 267 : MetIleHisLeuLeuTyrLeuSerTyrProGlyGlnLysValLeuAspTyrSerSerSerIl : 287 :!!:!!|||:!!|||||||||!!! !! !|||||| |||:!!||| !:!..!..!|| LeuValHisIleLeuTyrLeuThrLeuGlnGlyGlnPheValIleAspAlaAsnGluGluIl 3037 : TTGGTACACATACTTTACCTAACTCTTCAAGGACAATTCGTGATCGACGCGAACGAGGAAAT : 3097 288 : eCysGlnGlu{Se} >>>> Target Intron 1 >>>> {r}TyrThrAsnGluTrpT : 297 |! !:!!..!{! } 62 bp {!}|||!:! ! !|||| ePheGluSer{Il}++ ++{e}TyrSerAlaLeuTrpT 3098 : CTTCGAATCG{AT}gt.........................ag{A}TACAGCGCTTTGTGGT : 3189 298 : yrLeuIleSerLysLysSerLysIleLeuLeuLysPheMetMetLeuArgCysIleLysPro : 317 || !! !..!|||!:!!!!:!! |||!!! !!!. !:!: !!.!|||:!!... !! yrAsnSerAspLysArgThrGlnSerLeuPheValLeuAlaLeuArgAsnCysLeuSerAla 3190 : ATAACAGCGACAAGAGAACGCAATCGTTGTTTGTATTAGCGTTAAGAAATTGTCTATCTGCT : 3249 318 : SerValLeuThrAlaGlyGlyLeuTyrIleMetAsnTyrGluAsnTyr : 333 !! !:!!||||||||||||||| !! !||||||! :!!!:!!:! ProGlnIleThrAlaGlyGlyLeuIleThrMetAsnLeuGlnSerPhe 3250 : CCTCAAATAACAGCCGGTGGACTAATTACAATGAACTTGCAAAGTTTC : 3299 vulgar: NvOr172PSE 266 333 . KQ414921.1 3036 3299 + 111 M 24 72 S 0 2 5 0 2 I 0 58 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 3037 3299 111 + . gene_id 1 ; sequence NvOr172PSE ; gene_orientation + KQ414921.1 exonerate:protein2genome:local cds 3037 3110 . + . KQ414921.1 exonerate:protein2genome:local exon 3037 3110 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 3111 3112 . + . intron_id 1 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 3111 3172 . + . intron_id 1 KQ414921.1 exonerate:protein2genome:local splice3 3171 3172 . + . intron_id 0 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 3173 3299 . + . KQ414921.1 exonerate:protein2genome:local exon 3173 3299 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 3037 3299 111 + . alignment_id 1 ; Query NvOr172PSE ; Align 3037 267 72 ; Align 3174 292 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr174PSE Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 321 -> 375 Target range: 117785 -> 117947 322 : SerSerGluLysIlePheAsnSerAlaTyrSerSerGluTrpTyrLeuIleSerThrA : 341 ..!|||||| !||| !..!:!!||||||!!! ! |||:!!! ! ! !! ! GlnSerGluAlaIleGlyArgAlaAlaTyrThrValProTrpHisTrpTyrProArgC 117786 : CAGAGCGAAGCGATCGGTCGTGCAGCCTATACGGTGCCTTGGCATTGGTACCCTCGTT : 117843 342 : snAlaArgLysLeuThrLysValIleMetIleArgSerLeuTyrProCysHisLeuTh : 360 ! !||||||! !|||!!.:!!:!:|||||||||.!!! ! ! ||| !!.!||||| ysLeuArgLysProThrAsnMetLeuMetIleArgGlyGlnLysProValArgLeuTh 117844 : GCTTGCGAAAACCAACCAACATGCTGATGATCAGAGGTCAGAAACCGGTTCGTCTGAC : 117900 361 : rAlaGlyLysIleThrSerLeuSerMetGluThrPheGlySerLeu : 375 |||||||||||||..!.!!||||||:!!|||||||||!.!|||:!! rAlaGlyLysIleValGlyLeuSerLeuGluThrPheAlaSerVal 117901 : CGCCGGAAAAATCGTCGGACTCTCTCTGGAAACGTTTGCCTCTGTA : 117947 vulgar: NvOr174PSE 321 375 . KQ414940.1 117785 117947 + 113 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 117786 117947 113 + . gene_id 1 ; sequence NvOr174PSE ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 117786 117947 . + . KQ414940.1 exonerate:protein2genome:local exon 117786 117947 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 117786 117947 113 + . alignment_id 1 ; Query NvOr174PSE ; Align 117786 322 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr167 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 135 -> 220 Target range: 32494 -> 32746 136 : PheAlaGlyValGlyPheAlaThrLeuProGlyThrLeuProThrIleLeuAsnIleIle : 155 !:! !|||:!! !! ! !.!!:!! ! ! !|||||| !|||:!!:!!:!:||| TyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIle 32495 : TACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATA : 32552 156 : AlaProLeuAsnGluSerArgProThrLysValLeuCysPheTyrAlaGluTyrPheIle : 175 ||||||||||||||||||||| ! ! |||||| !:! !!.!|||||||||:!! AlaProLeuAsnGluSerArg---HisHisValLeuProTyrAlaGlyGluTyrPheVal 32553 : GCGCCTCTAAACGAATCCCGA---CACCATGTACTGCCGTACGCCGGCGAATATTTCGTC : 32609 176 : AspGlnGluGluTyrTyrTyrGlnLeuLeuPheGlnThrPheIleGlyValMetSerThr : 195 ||||||::::::|||::: !:!! !!!.!!.! !.!! !|||! ! ! AspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGly 32610 : GACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGT : 32669 196 : ValPheIleAsnAlaThrValAspThrLeuTyrValIleCysAlaHisHisSerAspGly : 215 :!! :!! !.!!.!!||||||::::::::::::... ! !||| ! !!.! LeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAla 32670 : CTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCC : 32729 216 : LeuPheAsnIleVal : 220 !|||||||||:!! LysPheAsnIleLeu 32730 : AAATTCAATATTCTC : 32746 vulgar: NvOr167 135 220 . KQ415081.1 32494 32746 + 112 M 27 81 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32495 32746 112 + . gene_id 1 ; sequence NvOr167 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32495 32746 . + . KQ415081.1 exonerate:protein2genome:local exon 32495 32746 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32495 32746 112 + . alignment_id 1 ; Query NvOr167 ; Align 32495 136 81 ; Align 32576 164 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr168 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 151 -> 223 Target range: 32530 -> 32746 152 : ValProLeuMetLeuAspLeuIleLeuProLeuAsnGluSerArgGlyValAsnLeuCys : 171 :!!|||! !!!::!!|||:!!||| !|||||||||||||||||| ! ! ||| LeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHisValLeuPro 32531 : CTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCG : 32588 172 : TyrTyrAlaGluTyrPheIleAspGlnGlnLysTyrPheIleTyrLeuLeuLeuHisThr : 191 ||| !!.!|||||||||:!!||||||||||||||||||::: :!! !||||||! ! TyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMet 32589 : TACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATG : 32648 192 : PheIleCysValSerPheThrIleLeuIleValThrAlaValAspSerThrPheValSer : 211 .!! !|||!!!.!! !:!: !:!!!.!||||||||||||||| |||::: LeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhe 32649 : CTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattc : 32708 212 : IleValTyrHisAlaValGlyLeuPheAspIleLeu : 223 ...::!!:!|||!.! !!.! !|||:!!|||||| PheMetPheHisValCysAlaLysPheAsnIleLeu 32709 : ttcatGTTCCACGTTTGCGCCAAATTCAATATTCTC : 32746 vulgar: NvOr168 151 223 . KQ415081.1 32530 32746 + 170 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32531 32746 170 + . gene_id 1 ; sequence NvOr168 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32531 32746 . + . KQ415081.1 exonerate:protein2genome:local exon 32531 32746 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32531 32746 170 + . alignment_id 1 ; Query NvOr168 ; Align 32531 152 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr168 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 129 -> 223 Target range: 22017 -> 22299 130 : LeuThrIlePheTyrMetGlyTyrMetPheThrAlaCysIleSerPheValThrLeuPro : 149 :::::: ||| :!:!.! !!.!.!:!:!!..! !!|||.!!.!! !!..! ! !! IleSerTyrPheLeuValAlaAspPheTyrSerCysGlyIleGlyLeuPheValThrAla 22018 : atttcgtattttctcgTTGCAGACTTCTATTCGTGTGGCATAGGACTTTTCGTTACAGCG : 22075 150 : SerAlaValProLeuMetLeuAspLeuIleLeuProLeuAsnGluSerArgGlyValAsn : 169 !!! !:!!|||:!!:!::!! ! !|||! !|||! !|||||||||!.!! ! !!.! ThrLeuLeuProIleValMetCysArgIleGlnProArgAsnGluSerHisValHisThr 22076 : ACGCTTCTACCAATCGTAATGTGTAGAATACAGCCACGTAACGAATCTCACGTACACACT : 22135 170 : LeuCysTyrTyrAlaGluTyrPheIleAspGlnGlnLysTyrPheIleTyrLeuLeuLeu : 189 :!! !:! ! ...|||||||||...||||||:!!||| !!.!.:!:!:!:!!:!!||| IleProPheGlnGlyGluTyrPhePheAspGlnGluLysAsnMetValPheIleIleLeu 22136 : ATTCCGTTTCAaggggaatattttttcgaccAAGAGAAAAATATGGTGTTCATTATACTG : 22195 190 : HisThrPheIleCysValSerPheThrIleLeuIleValThrAlaValAspSerThrPhe : 209 |||! !.!.:!! |||!!!.!!||| !! !|||!.!..! !..!|||! !! !!!. HisMetIleLeuThrValThrIleThrHisCysIleAlaValMetThrAspMetIleLeu 22196 : CACATGATACTCACAGTTACAATCACACATTGCATTGCTGTAATGACTGATATGATTTTG : 22255 210 : ValSerIleValTyrHisAlaValGlyLeuPheAspIleLeu : 223 :!! !:!!..! |||||| !!.!||||||! !:!!:!! LeuValLeuThrMetHisAlaCysAlaLeuPheAlaValVal 22256 : CTAGTTTTAACCATGCATGCCTGTGCCTTGTTCGCTGTTGTT : 22299 vulgar: NvOr168 129 223 . KQ415081.1 22017 22299 + 124 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 22018 22299 124 + . gene_id 2 ; sequence NvOr168 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 22018 22299 . + . KQ415081.1 exonerate:protein2genome:local exon 22018 22299 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 22018 22299 124 + . alignment_id 2 ; Query NvOr168 ; Align 22018 130 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr172PSE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 96 -> 182 Target range: 32488 -> 32746 97 : TyrLeuTyrAlaAlaGlyPheAlaPheSerGlnValSerMetValProValIleLeuAsp : 116 !:!:!!||| !!.! !|||:!!!:!:!! !|||..!.!.:!!||| !|||:!!||| PheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAsp 32489 : TTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGAC : 32546 117 : TyrIleTrpProLeuAsnGluSerArgProLysIleLeuIleValHisAlaGluTyrIle : 136 ||| !||||||||||||||||||! ! ! :!!||| ! !!.!||||||.!! ValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPhe 32547 : GTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTC : 32606 137 : IleAspProLeuGlnTyrTyrPheGluLeuTyrGlyAlaTyrCysIleLeuThrPheVal : 156 :!!||| :::|||:::... !:!! ! ! ! !..! !:!! ValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeu 32607 : GTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTT : 32666 157 : AsnLeuThrValLeuIleSerIleAspThrAlaPheSerSerIleValTyrGlnAsnLeu : 176 ..!||||||||| !! :!!:::|||::: ||| ...::!!:!!!. !! ! GlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCys 32667 : GGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGC : 32726 177 : GlyValPheSerIleVal : 182 !.! !|||!:!|||:!! AlaLysPheAsnIleLeu 32727 : GCCAAATTCAATATTCTC : 32746 vulgar: NvOr172PSE 96 182 . KQ415081.1 32488 32746 + 113 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32489 32746 113 + . gene_id 1 ; sequence NvOr172PSE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32489 32746 . + . KQ415081.1 exonerate:protein2genome:local exon 32489 32746 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32489 32746 113 + . alignment_id 1 ; Query NvOr172PSE ; Align 32489 97 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 120 -> 216 Target range: 32461 -> 32746 121 : LysPheLeuIleThrPheTyrGlnValTyrValTrpPheGlyTrpThrValTyrThrLeu : 140 :::|||...... .!! ! !! !!:!|||!::.!!||| ! !|||.!!:!! ArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIle 32462 : cgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATA : 32519 141 : MetProPheIleProTyrPheLeuAspLysValSerProLeuAsnGluSerArgProLeu : 160 :!!! !|||:!:||||||.!!:!!||| !:!!:!!||||||||||||||||||! !! ! ValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHis 32520 : GTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCAT : 32579 161 : LeuMetProPheTyrAlaAspTyrIleValPheAspGlnAlaAspTyrHisTyrThrSer : 180 :!!:!!|||!:! !!.!!!:|||.!!||| |||||| ||| !! ! ValLeuProTyrAlaGlyGluTyrPheVal---AspGlnGlnLysTyrPheLeuProIle 32580 : GTACTGCCGTACGCCGGCGAATATTTCGTC---GACcagcaaaaatatttcctaccAATC : 32636 181 : CysPheHisIleAlaPheValTyrIleSerSerAlaLeuLeuPheCysGlyValAspAla : 200 ...!!.|||!!: ! ..! !! ! !.!! ! !:!! ! !.!||||||::: AlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSer 32637 : GCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattca : 32696 201 : ThrPheValMetSerValGlnHisThrCysGlyLeuPheAlaIleIle : 216 |||:::... ::! |||..!|||!.! !||| !|||:!! IlePheIlePhePheMetPheHisValCysAlaLysPheAsnIleLeu 32697 : attttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATTCTC : 32746 vulgar: NvOr175 120 216 . KQ415081.1 32461 32746 + 130 M 50 150 G 1 0 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32462 32746 130 + . gene_id 1 ; sequence NvOr175 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32462 32746 . + . KQ415081.1 exonerate:protein2genome:local exon 32462 32746 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32462 32746 130 + . alignment_id 1 ; Query NvOr175 ; Align 32462 121 150 ; Align 32612 172 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr166 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 145 Query range: 146 -> 228 Target range: 32500 -> 32746 147 : GlyIleAlaPheThrThrLeuProCysLeuIleProAlaValLeuAspLeuIleIlePro : 166 |||||| !! ! !.!!:!! ! !!!:!:||| !:!!:!!|||:!!||| ||| GlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaPro 32501 : GGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCT : 32558 167 : LeuAsnAspSerArgGlnLysValLeuCysPheTyrGlyGluTyrPheIleAspGlnArg : 186 ||||||!!:||||||!!. ! |||||| !:! !||||||||||||:!!||||||::: LeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGln 32559 : CTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaa : 32618 187 : ValTyrTyrTyrGluLeuLeuLeuHisThrPheValCysValMetCysThrIleMetLeu : 206 |||::: !:!! !||||||! !.!!! ! !|||! ! !:!:! !:!! LysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrVal 32619 : aaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTC : 32678 207 : PheThrThrIleAspAlaAlaTyrAlaCysCysIleGluHisValIleGlyLeuPheAsn : 226 !|||.!!:::|||::: ::: ::: |||||| !!.! !|||||| AlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsn 32679 : GCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAAT : 32738 227 : IleVal : 228 |||:!! IleLeu 32739 : ATTCTC : 32746 vulgar: NvOr166 146 228 . KQ415081.1 32500 32746 + 145 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32501 32746 145 + . gene_id 1 ; sequence NvOr166 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32501 32746 . + . KQ415081.1 exonerate:protein2genome:local exon 32501 32746 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32501 32746 145 + . alignment_id 1 ; Query NvOr166 ; Align 32501 147 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr166 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 142 -> 256 Target range: 22041 -> 22387 143 : LeuTyrThrAlaGlyIleAlaPheThrThrLeuProCysLeuIleProAlaValLeuAsp : 162 !!!|||:!!..!||||||!.!.!! !..! ! !! |||:!!||| !|||:!! ! PheTyrSerCysGlyIleGlyLeuPheValThrAlaThrLeuLeuProIleValMetCys 22042 : TTCTATTCGTGTGGCATAGGACTTTTCGTTACAGCGACGCTTCTACCAATCGTAATGTGT : 22099 163 : LeuIleIleProLeuAsnAspSerArgGlnLysValLeuCysPheTyrGlyGluTyrPhe : 182 !||| |||! !|||!!:|||!.! ! ! ..!:!! ||| ! |||||||||||| ArgIleGlnProArgAsnGluSerHisValHisThrIleProPheGlnGlyGluTyrPhe 22100 : AGAATACAGCCACGTAACGAATCTCACGTACACACTATTCCGTTTCAaggggaatatttt : 22159 183 : IleAspGlnArgValTyrTyrTyrGluLeuLeuLeuHisThrPheValCysValMetCys : 202 ...||||||..! ! !! :!!:!!||||||! !.!.:!! |||! ! PheAspGlnGluLysAsnMetValPheIleIleLeuHisMetIleLeuThrValThrIle 22160 : ttcgaccAAGAGAAAAATATGGTGTTCATTATACTGCACATGATACTCACAGTTACAATC : 22219 203 : ThrIleMetLeuPheThrThrIleAspAlaAlaTyrAlaCysCysIleGluHisValIle : 222 ||| ! :!! !..!! !! !||| ! !! ! !! ! ! !|||!.! ! ThrHisCysIleAlaValMetThrAspMetIleLeuLeuValLeuThrMetHisAlaCys 22220 : ACACATTGCATTGCTGTAATGACTGATATGATTTTGCTAGTTTTAACCATGCATGCCTGT : 22279 223 : GlyLeuPheAsnIleVal----AspTyrArgLeuAsnGlnAlaPheAsnLeuValLysAs : 241 !.!|||||| !:!!|||#### ! |||...:::||| |||::: |||::: AlaLeuPheAlaValVal####LysTyrGluIleAsnPheLeuPheAspThrValGluLy 22280 : GCCTTGTTCGCTGTTGTTGGGTAAAtatgaaatcaattttctcttcgacaccgtcgaaaa : 22340 242 : pLysTyrAspThrLysSerGluValMetArgSerGluIleHisLys : 256 |||:::||| :::::: ...||| ...::: s***ThrAspSerLysIleValIleValPheGluGluThrArgArg 22341 : ataaacagattccaaaattgtaattgttttcgaagaaactcgacgc : 22387 vulgar: NvOr166 142 256 . KQ415081.1 22041 22387 + 107 M 86 258 F 0 4 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 22042 22387 107 + . gene_id 2 ; sequence NvOr166 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 22042 22387 . + . KQ415081.1 exonerate:protein2genome:local exon 22042 22387 . + . insertions 0 ; deletions 0 ; frameshifts 4 KQ415081.1 exonerate:protein2genome:local similarity 22042 22387 107 + . alignment_id 2 ; Query NvOr166 ; Align 22042 143 258 ; Align 22304 229 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr164PSE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 11 -> 81 Target range: 32515 -> 32725 12 : SerLeuProSerPheGlyProValIleMetAsnIleLeuPheProLeuAsnGluThrArg : 31 :!!:!! !..!||| !||| !|||!!::!!:!::!! ||||||||||||:!!||| AlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArg 32516 : GCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGA : 32573 32 : ArgLysGlnLeuProAlaProAlaGluTyrPheValAspGluGluLysTyrLeuTyrIle : 51 !.! ! !|||||| ! !!!.!|||||||||||||||::::::||||||... ! HisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuPro 32574 : CACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccA : 32633 52 : LeuPheLeuHisGlyMetIleCysCysIlePheValProIleLeuTyrValThrIleAsp : 71 :!! |||||| !:!: ! !! !.!!! !! !! :!! !..!.!!:::||| IleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAsp 32634 : ATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgat : 32693 72 : SerMetHisValLeuCysUnkTyrThrVal : 81 |||::: :::... !:! !||| SerIlePheIlePhePheMetPheHisVal 32694 : tcaattttcatattcttcatGTTCCACGTT : 32725 vulgar: NvOr164PSE 11 81 . KQ415081.1 32515 32725 + 105 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32516 32725 105 + . gene_id 1 ; sequence NvOr164PSE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32516 32725 . + . KQ415081.1 exonerate:protein2genome:local exon 32516 32725 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32516 32725 105 + . alignment_id 1 ; Query NvOr164PSE ; Align 32516 12 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr173 Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 121 -> 217 Target range: 181 -> 463 122 : TyrLeuValLeuPheTyrThrValTyrValPheLeuAlaTrpValThrCysAsnPheValProP : 143 |||:!!||| !!:!! ! !||| !!!.!.!!:!!..! :!! !! ! ! ..!||| TyrIleValLysTyrSerIleValAsnAlaIleValCysValIleLeuPheValSerThrProV 182 : TACATTGTCAAATATTCGATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGG : 245 144 : heIleProProLeuLeuAspIleLeuLeuProLeuGluAsnGlyThrHisAspLeuValTyrPr : 164 ! ! !|||! !:!!|||||||||||||||||| :!!|||! !:!!!..|||:!!!.!||| alThrProHisIleLeuAspIleLeuLeuPro---LysAsnGluSerArgAspValAlaTyr-- 246 : TGACACCGCATATTTTGGACATTTTACTACCG---AAAAACGAGTCACGAGACGTAGCGTAC-- : 305 165 : oPheTyrAlaAspTyrValPhePheLysGlnThrAspTyrHisTyrGluSerCysLeuHisVal : 185 .!!||| !!! !||| !||| ! ! :!! ! ! ||| !! ! ! ! ! !|||:!! -IleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMet 306 : -ATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATG : 365 186 : PhePheValTyrPheGlyThrThrSerLeuPheAlaGlyMetAspThrIleTyrValAlaThrV : 207 ! !||| !.!.! !..! !! !:!!!:! !!.! ||||||! !|||:!! !..!| AlaSerValIleLeuValValPheTyrValTyrPheAlaCysAspThrSerTyrIleTyrValV 366 : GCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCG : 431 208 : alLysHisSerCysGlyLeuPheAlaIleThr : 217 ||:!!|||.!!|||||||||!!.|||:!::!! alGlnHisGlyCysGlyLeuLeuAlaValSer 432 : TGCAACACGGCTGCGGATTGTTGGCCGTGTCC : 463 vulgar: NvOr173 121 217 . LHQN01023902.1 181 463 + 101 M 32 96 G 1 0 M 9 27 G 1 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 182 463 101 + . gene_id 1 ; sequence NvOr173 ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 182 463 . + . LHQN01023902.1 exonerate:protein2genome:local exon 182 463 . + . insertions 0 ; deletions 2 LHQN01023902.1 exonerate:protein2genome:local similarity 182 463 101 + . alignment_id 1 ; Query NvOr173 ; Align 182 122 96 ; Align 278 155 27 ; Align 305 165 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr168 Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 140 -> 229 Target range: 214 -> 481 141 : AlaCysIleSerPheValThrLeuProSerAlaValProLeuMetLeuAspLeuIleLeuProL : 162 !.!|||:!!! !.!. !!..!! ! !! !!!.!..!|||! !!!:||||||:!!:!!|||||| ValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProL 215 : GTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGA : 278 163 : euAsnGluSerArgGlyValAsnLeuCysTyrTyrAlaGluTyrPheIleAspGlnGlnLysTy : 183 !||||||||||||! !||| ! ! !||| ||| ! ||||||! !|||:!!!!.||||| ysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTy 279 : AAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTA : 341 184 : rPheIleTyrLeuLeuLeuHisThrPheIleCysValSerPheThrIleLeuIleValThrAla : 204 | !:!:|||:!!:!! !|||! ! ! :!! ! ! ..!.!!! !:!: ! !||| rAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrPheAla 342 : CGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCT : 404 205 : ValAspSerThrPheValSerIleValTyrHisAlaValGlyLeuPheAspIleLeuGluTyrA : 226 !|||!!!!:!!:!:!!! !:!!||| ! |||!.! !||||||!!.! !:!:! !! : CysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly***L 405 : TGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaa : 470 227 : rgMetArgAsn : 229 :::::|||::: ysIleArgSer 471 : aaattcgatcg : 481 vulgar: NvOr168 140 229 . LHQN01023902.1 214 481 + 141 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 215 481 141 + . gene_id 1 ; sequence NvOr168 ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 215 481 . + . LHQN01023902.1 exonerate:protein2genome:local exon 215 481 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 215 481 141 + . alignment_id 1 ; Query NvOr168 ; Align 215 141 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr164PSE Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 7 -> 75 Target range: 4999 -> 5200 8 : AlaAlaTyrAlaSerLeuProSerPheGlyProValIleMetAsnIleLeuPheProLeuAs : 28 ||| !!:! !!!!||||||! ! ! ..!||| |||:!!:!!||||||.!.|||||||| AlaLeuPheMetCysLeuProPheValSerPro---IleLeuAspIleLeuMetProLeuAs 5000 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCG---ATTCTGGACATCCTTATGCCGTTGAA : 5057 29 : nGluThrArgArgLysGlnLeuProAlaProAlaGluTyrPheValAspGluGluLysTyrL : 49 |||||||||| !::! !!!! ! !|||||| ! |||||||||||||||!!:||||||! nGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrH 5058 : CGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATC : 5120 50 : euTyrIleLeuPheLeuHisGlyMetIleCysCysIlePheValProIleLeuTyrValThr : 69 !|||:!::!! ! !||| ! :!! :!!.!.:!! ! !:!!!:! !.!! isTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 5121 : ATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 5180 70 : IleAspSerMetHisVal : 75 !|||:!!! :!!||| CysAspAlaAsnTyrVal 5181 : TGCGATGCCAATTACGTG : 5200 vulgar: NvOr164PSE 7 75 . LHQN01025741.1 4999 5200 + 113 M 11 33 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5000 5200 113 + . gene_id 1 ; sequence NvOr164PSE ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5000 5200 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5000 5200 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 5000 5200 113 + . alignment_id 1 ; Query NvOr164PSE ; Align 5000 8 33 ; Align 5033 20 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr164PSE Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 3 -> 55 Target range: 8895 -> 9051 4 : ValPheAlaLeuAlaAlaTyrAlaSerLeuProSerPheGlyProValIleMetAsnIleLe : 24 :!!||| !! !|||||| !! !! ! ! !!|||!.!|||:!!|||:!!:!!|||! LeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAspIleCy 8896 : TTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTG : 8956 25 : uPheProLeuAsnGluThrArgArgLysGlnLeuProAlaProAlaGluTyrPheValAspG : 45 ! |||||||||:!!||||||!:!::: !!!! ! !|||||| ! |||!:::!!||| sAlaProLeuAsnLysThrArgLysArgAlaPheValTyrProAlaTyrTyrTrpMetAspP 8957 : CGCGCCACTGAACAAAACGAGAAAACGTGCGTTCGTTTATCCAGCCTATTACTGGATGGATC : 9019 46 : luGluLysTyrLeuTyrIleLeuPheLeuHis : 55 |||:!!|||! ! |||:!!.!.:!!||| roGluGlnTyrTyrMetIleMetIleIleHis 9020 : CTGAGCAATACTACATGATAATGATAATACAC : 9051 vulgar: NvOr164PSE 3 55 . LHQN01025741.1 8895 9051 + 103 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 8896 9051 103 + . gene_id 2 ; sequence NvOr164PSE ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 8896 9051 . + . LHQN01025741.1 exonerate:protein2genome:local exon 8896 9051 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 8896 9051 103 + . alignment_id 2 ; Query NvOr164PSE ; Align 8896 4 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 211 Query range: 60 -> 252 Target range: 4686 -> 5347 61 : ThrValThrPheGluAsnThrValSerValMetPheAlaIleGlyCysCysAlaLysTyrVa : 81 |||:!!:!!! !||| ! !! !|||...!:!:!! ! !||| ! !!!.! :! ThrIleSer***ThrAsnGlnArg***ValGlnTyrSerProThrCysLeuLeuAsnSerIl 4687 : ACTATTTCATAAACGAATCAGAGGTAAGTGCAATACTCTCCAACGTGTCTTCTTAACTCAAT : 4747 82 : lValThrTyrThrSerSerGlnArgLeuValArgLeuPheLysGlnIleAlaSerAspTrpG : 102 ! !:!! .!!|||!.! !:!||| ! !|||.!! !:!!||| !..!||||||: eLysSerProAlaSerLysPheGlnLeuLysTyrLeuLeuGlyLysIleTyrGluAspTrpA 4748 : CAAATCACCAGCTTCGAAATTTCAGCTGAAATATCTTCTTGGAAAGATCTACGAAGACTGGA : 4810 103 : lnArgIleThrAspThrThrGluLeuSerIleLeuThrLysTyrSerGluLysGlyLysPhe : 122 :! !!!:|||... ! !|||! !!.!|||:!!|||||||||:!!|||||||||! ||| rgAlaMetThrSerGluAspGluTyrLysIleMetThrLysTyrAlaGluLysGlyIlePhe 4811 : GAGCCATGACGTCGGAGGATGAGTACAAGATCATGACGAAATACGCGGAGAAAGGGATTTTC : 4870 123 : LeuIleThrPheTyrGln{V} >>>> Target Intron 1 >>>> {al}TyrValTr : 132 !:!!! !.!!||| {:} 88 bp {!!}:!!:!!! SerValIleLeuTyrIle{L}++ ++{eu}HisIleSe 4871 : AGTGTCATACTCTATATT{C}gt.........................ag{TG}CATATATC : 4988 133 : pPheGlyTrpThrValTyrThrLeuMetProPheIleProTyrPheLeuAspLysValSerP : 153 !!!. !! .!!:!!!:!! !! !:!!||||||:!: !! .!!||||||! :!!! !| rLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetP 4989 : GTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGC : 5051 154 : roLeuAsnGluSerArgProLeuLeuMetProPheTyrAlaAspTyrIleValPheAspGln : 173 |||||||||||!!!||| !!! !|||.!. !!:! ||| !!|||.!!||| |||:!! roLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal---AspGlu 5052 : CGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC---GACGAG : 5108 174 : AlaAspTyrHisTyrThrSerCysPheHisIleAlaPheValTyrIleSerSerAlaLeuLe : 194 ! ! ! ||||||||| !! ! |||!!: !.!!||| :!!! ! ! !! !:! AspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerVa 5109 : GACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGT : 5171 195 : uPheCysGlyValAspAlaThrPheValMetSerValGlnHisThrCysGlyLeuPheAlaI : 215 !||||||!.! !||||||!.!!:!||| :!!|||||||||.!!|||||||||!!.|||| lPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaI 5172 : TTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCA : 5234 216 : leIleCysHisArgLeuGluGlyGluLysIleLysLysGluSerGluTyrAlaGlnAsnVal : 235 || ! ! ! !:!!:!!|||:!! !!!::!!!!.! ! ! ||| !.!. !||| leAlaGly***LeuValGlnGlyGlnLeuMetGluAsnGlyPheLeuTyrArgAsnPheVal 5235 : TTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAATGGTTTTCTTTATAGAAATTTCGTT : 5294 236 : MetLysThrLeuSerGluGluGluLeuArgGluValValIlePheHisAsn : 252 !|||:!!|||.!..!.! !! ! !|||! !||| !! ||| GlyPheCysLeuAlaGluAsnAsnCysLeuLeuValAspIleValLeuAsn 5295 : GGCTTTTGTTTAGCTGAAAACAATTGTCTGTTGGTAGATATCGTTTTAAAT : 5347 vulgar: NvOr175 60 252 . LHQN01025741.1 4686 5347 + 211 M 68 204 S 0 1 5 0 2 I 0 84 3 0 2 S 1 2 M 41 123 G 1 0 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4687 5347 211 + . gene_id 1 ; sequence NvOr175 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 4687 4891 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4687 4891 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 4892 4893 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 4892 4979 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 4978 4979 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 4980 5347 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4980 5347 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 4687 5347 211 + . alignment_id 1 ; Query NvOr175 ; Align 4687 61 204 ; Align 4982 130 123 ; Align 5105 172 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 327 -> 387 Target range: 9266 -> 9531 328 : ValPheLeuAlaAlaTyrCysSerLysTrpTyrValIleSerThrSerAlaArgAlaPheIl : 348 :!! !!|||..! !||| |||:!!|||||| !.!!!!! !!!!!.!!!:!|||!!. LeuValLeuCysArgTyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTy 9267 : CTTGTCCTTTGCAGATACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTA : 9327 349 : eLysIleIleMetValArgAlaLeuGluProCysArgLeuThrAlaGlyGlyLeuSerThrL : 369 ! !:!: !:!! !!!!..!|||.!.||| !! !|||||||||||||||:!!!!!|||| rValLeuAlaLeuArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrL 9328 : TGTATTGGCATTGAGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGT : 9390 370 : euCysMetGluSerPheGlyIle >>>> Target Intron 1 >>>> LeuIleLysT : 380 || !:!:..!||||||!.! 85 bp :!!||||||. euAsnLeuArgSerPheAlaGlu++ ++IleIleLysA 9391 : TGAATCTACGATCGTTCGCAGAGgt.........................agATCATCAAAG : 9508 381 : hrSerValSerTyrPheThrVal : 387 !!||||||||||||!:!|||||| laSerValSerTyrTyrThrVal 9509 : CATCTGTTTCCTACTACACGGTG : 9531 vulgar: NvOr175 327 387 . LHQN01025741.1 9266 9531 + 110 M 49 147 5 0 2 I 0 81 3 0 2 M 11 33 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 9267 9531 110 + . gene_id 2 ; sequence NvOr175 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 9267 9413 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9267 9413 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 9414 9415 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 9414 9498 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 9497 9498 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 9499 9531 . + . LHQN01025741.1 exonerate:protein2genome:local exon 9499 9531 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 9267 9531 110 + . alignment_id 2 ; Query NvOr175 ; Align 9267 328 147 ; Align 9499 377 33 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 325 -> 390 Target range: 2536 -> 2970 326 : GluAspValPheLeuAlaAlaTyrCysSerLysTrpTyrValIleSerThrSerAlaArgAl : 346 :!!!!::!!|||:!! ! !||| !!:!!||||||||| !! !||| !!!!!.!!!:!.! GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGlnTh 2537 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAAAC : 2597 347 : aPheIleLysIleIleMetValArgAlaLeuGluProCysArgLeuThrAlaGlyGlyLeuS : 367 !.!. ! !:!! !:!! !|||::!||| ||| !||||||||||||||||||! rLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGlyLeuI 2598 : TCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGA : 2660 368 : erThrLeuCysMetGluSerPheGlyIle >>>> Target Intron 1 >>>> LeuI : 378 !:!!||| !:!!|||!!!|||!.! 239 bp :!!: leSerLeuAsnLeuGluThrPheAlaGlu++ ++IleL 2661 : TTTCCTTGAATTTGGAGACTTTTGCCGAGgt.........................agaTCT : 2932 379 : leLysThrSerValSerTyrPheThrValPheLeuSer : 390 !!|||.!!|||||||||:::|||||||||.!. !||| euLysAlaSerValSerPhePheThrValMetLysSer 2933 : TAAAAGCAtccgtttcctttttcacgGTAATGAAATCG : 2970 vulgar: NvOr175 325 390 . LHQN01025741.1 2536 2970 + 105 M 51 153 5 0 2 I 0 235 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 2537 2970 105 + . gene_id 3 ; sequence NvOr175 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 2537 2689 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2537 2689 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 2690 2691 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 2690 2928 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 2927 2928 . + . intron_id 0 ; splice_site "ag" LHQN01025741.1 exonerate:protein2genome:local cds 2929 2970 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2929 2970 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 2537 2970 105 + . alignment_id 3 ; Query NvOr175 ; Align 2537 326 153 ; Align 2929 377 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 158 -> 215 Target range: 11558 -> 11729 159 : ProLeuLeuMetProPheTyrAlaAspTyrIleValPheAspGlnAlaAspTyrHisTyr : 178 ||| !|||... ! !! !!! ||| ! !! !!|||:!!!.!!!:|||:!!||| ProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyrTyr 11559 : CCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTAT : 11616 179 : ThrSerCysPheHisIleAlaPheValTyrIleSerSerAlaLeuLeuPheCysGlyVal : 198 !! ! .!!||| !.!!! !..! !:!:! ! !!.!:!!:!!!:!|||!.! ! TyrIleIleLeuHisGlyThrCysThrValLeuIleValValValValTyrCysAlaCys 11617 : TACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 11676 199 : AspAlaThrPheValMetSerValGlnHisThrCysGlyLeuPheAlaIle : 215 |||.!!!:!!:!:!!:!: !|||||||||||||||||||||||||||:!: AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaVal 11677 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTG : 11729 vulgar: NvOr175 158 215 . LHQN01025741.1 11558 11729 + 102 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11559 11729 102 + . gene_id 4 ; sequence NvOr175 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11559 11729 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11559 11729 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11559 11729 102 + . alignment_id 4 ; Query NvOr175 ; Align 11559 159 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr172PSE Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 253 -> 333 Target range: 2310 -> 2683 254 : MetGlnPheIleArgLeuAlaMetIleGluValGlyValMetIleHisLeuLeuTyrLeuSe : 274 |||:!!||| !!:!! !..! .!! !|||! ! !:!!:!!|||||||||!:!||||| MetGluPheTyrLysTyrCysGlyPheLeuValValGlnLeuValHisLeuLeuPheLeuSe 2311 : ATGGAGTTCTACAAGTATTGCGGTTTCTTGGTGGTGCAACTGGTTCATTTGCTTTTCCTTTC : 2371 275 : rTyrProGlyGlnLysValLeuAspTyrSerSerSerIleCysGlnGlu{Se} >>>> Ta : 291 | !! !|||!!. :!!:!! !! !..!! !! !! !.!..!.{! } rIleGlnGlyHisPheIleIleLeuSerHisAspMetThrTyrAspAsn{Il}++ 2372 : TATCCAGGGACACTTTATTATACTCTCGCATGACATGACTTACGACAAC{AT}gt....... : 2426 292 : rget Intron 1 >>>> {r}TyrThrAsnGluTrpTyrLeuIleSerLysLysSerLys : 304 133 bp {!}|||!:! :!!|||||| !! !||| !!:!!!!:!! ++{e}TyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 2427 : ..................ag{A}TATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 2594 305 : IleLeuLeuLysPheMetMetLeuArgCysIleLysProSerValLeuThrAlaGlyGlyLe : 325 ! !|||! ! !.!. :!! !||| !!:!:! ||| !!:!!||||||||||||||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGlyLe 2595 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACT : 2657 326 : uTyrIleMetAsnTyrGluAsnTyr : 333 | ! !:!!|||! |||!.!!:! uIleSerLeuAsnLeuGluThrPhe 2658 : GATTTCCTTGAATTTGGAGACTTTT : 2683 vulgar: NvOr172PSE 253 333 . LHQN01025741.1 2310 2683 + 105 M 37 111 S 0 2 5 0 2 I 0 129 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 2311 2683 105 + . gene_id 1 ; sequence NvOr172PSE ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 2311 2423 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2311 2423 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 2424 2425 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 2424 2556 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 2555 2556 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 2557 2683 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2557 2683 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 2311 2683 105 + . alignment_id 1 ; Query NvOr172PSE ; Align 2311 254 111 ; Align 2558 292 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr174PSE Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 119 -> 214 Target range: 4957 -> 5236 120 : PheAlaSerLeuPheTyrThrPheTyrValPheTrpAlaTrpAlaThrTyrAsnMetMetPr : 140 ||| !! ! !||| ! ||| ! :!!:!!! ! ..! ||| !!:!! :!!|| PheTyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuPr 4958 : TTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCC : 5018 141 : oPheLeuProProIleLeuAspIleValLeuProLeuProAsnGlySerHisProLeuLeuL : 161 ||||:!! !!|||||||||||||||:!!:!!|||||| !.!. ! !! ! !|||!!!: oPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheV 5019 : GTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCG : 5081 162 : euProPheTyrAlaAsnTyrIlePhePheGluGlnLeuAspTyrHisTyrGluThrAlaLeu : 181 !! ||| !! !||| !||| !!!!::!! ! ! ||||||||| !! !!.! ! al------TyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGly 5082 : TC------TATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGG : 5135 182 : HisAlaPhePheValTyrPhePheAlaThrSerLeuPheAlaGlyIleAspThrIleTyrVa : 202 ||| !!:!.!!||| ! .!. !! !|||:!!|||..!!.! !|||.!!! !||||| HisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrVa 5136 : CATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGT : 5198 203 : lSerThrValLysHisThrCysGlyLeuPheAlaIle : 214 |! !.!!|||:!!|||.!!|||||||||!!.|||||| lTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 5199 : GTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 5236 vulgar: NvOr174PSE 119 214 . LHQN01025741.1 4957 5236 + 134 M 42 126 G 2 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4958 5236 134 + . gene_id 1 ; sequence NvOr174PSE ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4958 5236 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4958 5236 . + . insertions 0 ; deletions 2 LHQN01025741.1 exonerate:protein2genome:local similarity 4958 5236 134 + . alignment_id 1 ; Query NvOr174PSE ; Align 4958 120 126 ; Align 5084 164 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr174PSE Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 157 -> 223 Target range: 11558 -> 11756 158 : ProLeuLeuLeuProPheTyrAlaAsnTyrIlePhePheGluGlnLeuAspTyrHisTyr : 177 ||| !|||! ! ! !! !!...||| !||| !!!!::!!:!!!!:|||:!!||| ProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyrTyr 11559 : CCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTAT : 11616 178 : GluThrAlaLeuHisAlaPhePheValTyrPhePheAlaThrSerLeuPheAlaGlyIle : 197 ! ! ! !||||||!.! ! !..! !!!..!!!.!..! !:!!!:!..!!.! ! TyrIleIleLeuHisGlyThrCysThrValLeuIleValValValValTyrCysAlaCys 11617 : TACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 11676 198 : AspThrIleTyrValSerThrValLysHisThrCysGlyLeuPheAlaIleIleZedLeu : 217 ||||||! !|||:!! ! !|||:!!|||||||||||||||||||||:!: ! ! ! AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly*** 11677 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGGTGA : 11736 218 : GluThrLeuAlaLysThr : 223 |||!.!||| ||| GluAsnLeuArgAspThr 11737 : GAAAACTTGAGagataca : 11756 vulgar: NvOr174PSE 157 223 . LHQN01025741.1 11558 11756 + 107 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11559 11756 107 + . gene_id 2 ; sequence NvOr174PSE ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11559 11756 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11559 11756 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11559 11756 107 + . alignment_id 2 ; Query NvOr174PSE ; Align 11559 158 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr173 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 121 -> 216 Target range: 4957 -> 5236 122 : TyrLeuValLeuPheTyrThrValTyrValPheLeuAlaTrpValThrCysAsnPheValPr : 142 !:!! ! !! !||| ! ||||||:!!:!!! |||..! !.! !! !! ! !:!!|| PheTyrPheThrPheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuPr 4958 : TTCTATTTCACGTTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCC : 5018 143 : oPheIleProProLeuLeuAspIleLeuLeuProLeuGluAsnGlyThrHisAspLeuValT : 163 ||||:!: !!|||:!!||||||||||||:!!|||||| |||! !|||!..! ! !:!!! oPheValSerProIleLeuAspIleLeuMetProLeu---AsnGluThrArgAlaArgLeuP 5019 : GTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTG---AACGAGACGCGAGCACGGTTGT : 5078 164 : yrProPheTyrAlaAspTyrValPhePheLysGlnThrAspTyrHisTyrGluSerCysLeu : 183 :! !!||| !!! !||| !||| !! ! :!! ! ! ||||||||| !! ! ! he---ValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGly 5079 : TC---GTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGG : 5135 184 : HisValPhePheValTyrPheGlyThrThrSerLeuPheAlaGlyMetAspThrIleTyrVa : 204 |||:!!!:!.!!||| ! ! !! !|||:!!|||..!!.! |||.!!! !||||| HisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrVa 5136 : CATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGT : 5198 205 : lAlaThrValLysHisSerCysGlyLeuPheAlaIle : 216 | !.!!|||:!!|||:!!|||||||||!!.|||||| lTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 5199 : GTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 5236 vulgar: NvOr173 121 216 . LHQN01025741.1 4957 5236 + 136 M 33 99 G 1 0 M 8 24 G 1 0 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4958 5236 136 + . gene_id 1 ; sequence NvOr173 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4958 5236 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4958 5236 . + . insertions 0 ; deletions 2 LHQN01025741.1 exonerate:protein2genome:local similarity 4958 5236 136 + . alignment_id 1 ; Query NvOr173 ; Align 4958 122 99 ; Align 5057 156 24 ; Align 5081 165 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr167 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 130 -> 219 Target range: 4975 -> 5236 131 : SerValTyrValAsnPheAlaGlyValGlyPheAlaThrLeuProGlyThrLeuProThrIl : 151 !!!|||:!!:!!:::!!...!!.!!.! !||| ! !|||||| !..!! !||| || ThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerPro---Il 4976 : ACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCG---AT : 5033 152 : eLeuAsnIleIleAlaProLeuAsnGluSerArgProThrLysValLeuCysPheTyrAlaG : 172 ||||:!!|||:!! !||||||||||||!!!||| .!!::!:!!!!! !!:! ||| eLeuAspIleLeuMetProLeuAsnGluThrArg---AlaArgLeuPheValTyrProAlaT 5034 : TCTGGACATCCTTATGCCGTTGAACGAGACGCGA---GCACGGTTGTTCGTCTATCCAGCTT : 5093 173 : luTyrPheIleAspGlnGluGluTyrTyrTyrGlnLeuLeuPheGlnThrPheIleGlyVal : 192 ! ||||||:!!|||:!!!!::!!|||:!!||| !:!!:!! !!.! !!:!:!!! !||| yrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValVal 5094 : ACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTG : 5153 193 : MetSerThrValPheIleAsnAlaThrValAspThrLeuTyrValIleCysAlaHisHisSe : 213 :!:! ! !:!!! !:!! !..!.!! !|||.!! !|||||| !..!!.!!!.|||:! ValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAl 5154 : GTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGC : 5216 214 : rAspGlyLeuPheAsnIle : 219 ! !||||||!!. !||| aCysGlyLeuLeuAlaIle 5217 : TTGCGGATTGTTGGCCATT : 5236 vulgar: NvOr167 130 219 . LHQN01025741.1 4975 5236 + 110 M 19 57 G 1 0 M 12 36 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4976 5236 110 + . gene_id 1 ; sequence NvOr167 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4976 5236 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4976 5236 . + . insertions 0 ; deletions 2 LHQN01025741.1 exonerate:protein2genome:local similarity 4976 5236 110 + . alignment_id 1 ; Query NvOr167 ; Align 4976 131 57 ; Align 5033 151 36 ; Align 5069 164 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr169INT Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 99 -> 187 Target range: 4969 -> 5236 100 : PheTyrThrAlaTyrIleHisIleCysMetPhePhePheValTrpSerProAlaLeuGlyPr : 120 ||| ! |||!.!:!!||| :!!||| !.!.|||:!!!! ! !||| !:!!..!|| PheGluThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerPr 4970 : TTTGAAACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCC : 5030 121 : oMetIle<->LeuAsnThrPheSerAsnAlaThrTyrLysLysSerIleCysIleAspAlaG : 140 |!!::!: :!! !! ! ! !|||! !||| !::!! !.!! ! ! ||| oIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaT 5031 : GATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTT : 5093 141 : luTyrPheValAspGlnAspGluTyrPheSerTyrIlePheSerHisThrValPheValSer : 160 ! ||||||||||||:!!|||:!!||| !! !! ||| ! .!!|||! ! !.!!||| ! yrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValVal 5094 : ACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTG : 5153 161 : LeuLeuSerAlaSerIleLeuThrAlaPheAspSerThrPheValLeuIleThrGlnHisGl : 181 :!!:!! ! !|||:!!!!! !|||! !|||:!!!.!!:!|||! ! !..!||||||!. ValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAl 5154 : GTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGC : 5216 182 : yIleGlyLeuLeuHisVal : 187 ! !||||||||| !:!! aCysGlyLeuLeuAlaIle 5217 : TTGCGGATTGTTGGCCATT : 5236 vulgar: NvOr169INT 99 187 . LHQN01025741.1 4969 5236 + 114 M 23 69 G 0 3 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4970 5236 114 + . gene_id 1 ; sequence NvOr169INT ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4970 5236 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4970 5236 . + . insertions 3 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4970 5236 114 + . alignment_id 1 ; Query NvOr169INT ; Align 4970 100 69 ; Align 5042 123 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr170 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 145 -> 280 Target range: 4975 -> 5463 146 : SerIleTyrAlaAlaMetSerCysLeuLeuPheValThrLeuProAlaValIleProMetIl : 166 !!!:!::!! !:!!:!:!!!..! !||||||:!! !|||||| !||| ||| || ThrValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerPro---Il 4976 : ACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCG---AT : 5033 167 : eLeuAsnIleIleLeuThrArgAsnGluThrPheLysLysSerLeuCysIleTyrCysGluT : 187 ||||:!!|||:!!:!! !! !||||||||| !::!! !!!! ! ! ..! ! | eLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrT 5034 : TCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACT : 5096 188 : yrTyrIleAspGlnAspLysTyrPhePheTyrIlePheLeuHisHisIleIleAlaGlyIle : 207 ||!:!:!!|||:!!||||||||| !!:!! ||| ! !||| !:!!!.!! !:!! yrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValVal 5097 : ATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTA : 5156 208 : AlaThrIlePheLeuThrIleGlyIleAspThrSerTyrValAsnCysValGlnHisValLe : 228 ! !|||! !:!! ! !!.! !|||.!!!:!|||||| !!..!|||||||||!.!! MetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCy 5157 : ATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTG : 5219 229 : uAlaLeuPheAsnValSer{Ar} >>>> Target Intron 1 >>>> {g}TyrArgL : 238 !!.!|||!!. !:!!:!!{ !} 92 bp {!}||||||! sGlyLeuLeuAlaIleAla{Gl}++ ++{y}TyrArgP 5220 : CGGATTGTTGGCCATTGCA{GG}gt.........................ag{A}TATCGTT : 5341 239 : euLysValAlaPheAspThrIleHisHisSerLysLysAsnAspTyrAsnLeuLysThrLeu : 258 !!||| !|||! ! !! !:!! ! ! :!!:!!!!: ! .!. ! !! !:!! heLysTyrAlaCysTyrGluVal------IleProGluAspGluLysGluAlaValLysMet 5342 : TTAAATACGCCTGCTATGAGGTA------ATACCCGAGGATGAGAAGGAAGCTGTGAAGATG : 5395 259 : GluAsnAsnValHisSerTyrValValSerSerIleArgLeuHisGlnArgSerIleLysPh : 279 !!..!!.:!!:!!!!! !!||| ! !|||||||||:!!|||||||||:!!:!!:!!! MetArgLysMetTyrArgAsnValCysHisSerIleArgIleHisGlnArgAlaLeuGlnSe 5396 : ATGAGAAAGATGTATAGAAATGTTTGTCATTCGATTCGAATACATCAACGTGCTTTACAGTc : 5458 280 : eVal : 280 ||| rVal 5459 : ggta : 5463 vulgar: NvOr170 145 280 . LHQN01025741.1 4975 5463 + 126 M 19 57 G 1 0 M 69 207 S 0 2 5 0 2 I 0 88 3 0 2 S 1 1 M 10 30 G 2 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4976 5463 126 + . gene_id 1 ; sequence NvOr170 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 4976 5241 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4976 5241 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local splice5 5242 5243 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 5242 5333 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 5332 5333 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 5334 5463 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5334 5463 . + . insertions 0 ; deletions 2 LHQN01025741.1 exonerate:protein2genome:local similarity 4976 5463 126 + . alignment_id 1 ; Query NvOr170 ; Align 4976 146 57 ; Align 5033 166 207 ; Align 5335 236 30 ; Align 5365 248 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr168 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 141 -> 222 Target range: 1582 -> 1825 142 : CysIleSerPheValThrLeuProSerAlaValProLeuMetLeuAspLeuIleLeuProLe : 162 ||| ! !.!. !!|||! ! !:!! !..!|||! !:!:||||||||||||! !||| CysTyrValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLy 1583 : TGCTACGTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAA : 1643 163 : uAsnGluSerArgGlyValAsnLeuCysTyrTyrAlaGluTyrPheIleAspGlnGlnLysT : 183 !||||||||||||||||||:!!!!! !||| !||| ! ||| !:!!|||:!!:!!:!!: sAsnGluSerArgGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluH 1644 : AAACGAATCGCGTGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAGGAAC : 1706 184 : yrPheIleTyrLeuLeuLeuHisThrPheIleCysValSerPheThrIleLeuIleValThr : 203 !!!:! ! !|||:!! !|||! !.!! ! :!!!!! ! ..!.!!!!!:!! !! ! isTyrTyrIleLeuMetGlyHisMetLeuCysValIleThrValValPhePheValTyrIle 1707 : ATTATTACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTCTACATC : 1766 204 : AlaValAspSerThrPheValSerIleValTyrHisAlaValGlyLeuPheAspIle : 222 :!! !|||!!!! !!:!:!!!:!|||||| ! |||||| !||||||.!.:!!:!! SerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnVal 1767 : TCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGCGGATTACTGAACGTC : 1825 vulgar: NvOr168 141 222 . LHQN01025741.1 1582 1825 + 143 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1583 1825 143 + . gene_id 1 ; sequence NvOr168 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1583 1825 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1583 1825 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1583 1825 143 + . alignment_id 1 ; Query NvOr168 ; Align 1583 142 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr168 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 144 -> 222 Target range: 5005 -> 5236 145 : PheValThrLeuProSerAlaValProLeuMetLeuAspLeuIleLeuProLeuAsnGluSe : 165 |||:!! !||||||! !!.! !|||:!! ||||||:!!:!!:!!||||||||||||!! PheMetCysLeuProPheValSerProIle---LeuAspIleLeuMetProLeuAsnGluTh 5006 : TTTATGTGCTTGCCGTTCGTGTCGCCGATT---CTGGACATCCTTATGCCGTTGAACGAGAC : 5063 166 : rArgGlyValAsnLeuCysTyrTyrAlaGluTyrPheIleAspGlnGlnLysTyrPheIleT : 186 !|||!.! ! !!! !||| ||| ! ||||||:!!|||:!!.!.|||||| ! !! rArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrL 5064 : GCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACT : 5126 187 : yrLeuLeuLeuHisThrPheIleCysValSerPheThrIleLeuIleValThrAlaValAsp : 206 :!!:!! !|||! !!:!:!! ||| !.!. !|||! !:!! !! !||| !||| euIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAsp 5127 : TGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGAT : 5186 207 : SerThrPheValSerIleValTyrHisAlaValGlyLeuPheAspIle : 222 :!!!.!!:!|||! ! !||| ! |||||| !||||||!!.! !||| AlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 5187 : GCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 5236 vulgar: NvOr168 144 222 . LHQN01025741.1 5005 5236 + 134 M 10 30 G 1 0 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5006 5236 134 + . gene_id 2 ; sequence NvOr168 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5006 5236 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5006 5236 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 5006 5236 134 + . alignment_id 2 ; Query NvOr168 ; Align 5006 145 30 ; Align 5036 156 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 327 -> 387 Target range: 2829 -> 2564 328 : ValPheLeuAlaAlaTyrCysSerLysTrpTyrValIleSerThrSerAlaArgAlaPheIl : 348 :!! !!|||..! !||| |||:!!|||||| !.!!!!! !!!!!.!!!:!|||!!. LeuValLeuCysArgTyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTy 2829 : CTTGTCCTTTGCAGATACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTA : 2769 349 : eLysIleIleMetValArgAlaLeuGluProCysArgLeuThrAlaGlyGlyLeuSerThrL : 369 ! !:!: !:!! !!!!..!|||.!.||| !! !|||||||||||||||:!!!!!|||| rValLeuAlaLeuArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrL 2768 : TGTATTGGCATTGAGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGT : 2706 370 : euCysMetGluSerPheGlyIle >>>> Target Intron 1 >>>> LeuIleLysT : 380 || !:!:..!||||||!.! 85 bp :!!||||||. euAsnLeuArgSerPheAlaGlu++ ++IleIleLysA 2705 : TGAATCTACGATCGTTCGCAGAGgt.........................agATCATCAAAG : 2588 381 : hrSerValSerTyrPheThrVal : 387 !!||||||||||||!:!|||||| laSerValSerTyrTyrThrVal 2587 : CATCTGTTTCCTACTACACGGTG : 2565 vulgar: NvOr175 327 387 . LHQN01027734.1 2829 2564 - 110 M 49 147 5 0 2 I 0 81 3 0 2 M 11 33 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 2565 2829 110 - . gene_id 1 ; sequence NvOr175 ; gene_orientation + LHQN01027734.1 exonerate:protein2genome:local cds 2683 2829 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2683 2829 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local splice5 2681 2682 . - . intron_id 1 ; splice_site "GT" LHQN01027734.1 exonerate:protein2genome:local intron 2598 2682 . - . intron_id 1 LHQN01027734.1 exonerate:protein2genome:local splice3 2598 2599 . - . intron_id 0 ; splice_site "AG" LHQN01027734.1 exonerate:protein2genome:local cds 2565 2597 . - . LHQN01027734.1 exonerate:protein2genome:local exon 2565 2597 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 2565 2829 110 - . alignment_id 1 ; Query NvOr175 ; Align 2830 328 147 ; Align 2598 377 33 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 158 -> 215 Target range: 1164 -> 993 159 : ProLeuLeuMetProPheTyrAlaAspTyrIleValPheAspGlnAlaAspTyrHisTyrTh : 179 ||| !||| ! !! !!! ||| ! !! !!|||:!!!.!!!:|||:!!||| ProSerLeuProValValValProGlyTyrTyrPheValAspGluValGluTyrTyrTyrTy 1164 : CCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTATTA : 1104 180 : rSerCysPheHisIleAlaPheValTyrIleSerSerAlaLeuLeuPheCysGlyValAspA : 200 !! ! .!!||| !.!!! !..! !:!:! ! !!.!:!!:!!!:!|||!.! !|||. rIleIleLeuHisGlyThrCysThrValLeuIleValValValValTyrCysAlaCysAspT 1103 : CATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACA : 1041 201 : laThrPheValMetSerValGlnHisThrCysGlyLeuPheAlaIle : 215 !!!:!!:!:!!:!: !|||||||||||||||||||||||||||:!: hrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaVal 1040 : CCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTG : 994 vulgar: NvOr175 158 215 . LHQN01027734.1 1164 993 - 102 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 994 1164 102 - . gene_id 2 ; sequence NvOr175 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 994 1164 . - . LHQN01027734.1 exonerate:protein2genome:local exon 994 1164 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 994 1164 102 - . alignment_id 2 ; Query NvOr175 ; Align 1165 159 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr174PSE Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 157 -> 223 Target range: 1164 -> 966 158 : ProLeuLeuLeuProPheTyrAlaAsnTyrIlePhePheGluGlnLeuAspTyrHisTyrGl : 178 ||| !|||! ! ! !! !!...||| !||| !!!!::!!:!!!!:|||:!!||| ! ProSerLeuProValValValProGlyTyrTyrPheValAspGluValGluTyrTyrTyrTy 1164 : CCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTATTA : 1104 179 : uThrAlaLeuHisAlaPhePheValTyrPhePheAlaThrSerLeuPheAlaGlyIleAspT : 199 ! ! !||||||!.! ! !..! !!!..!!!.!..! !:!!!:!..!!.! !|||| rIleIleLeuHisGlyThrCysThrValLeuIleValValValValTyrCysAlaCysAspT 1103 : CATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACA : 1041 200 : hrIleTyrValSerThrValLysHisThrCysGlyLeuPheAlaIleIleZedLeuGluThr : 219 ||! !|||:!! ! !|||:!!|||||||||||||||||||||:!: ! ! !|||!.! hrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly***GluAsn 1040 : CCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGGTGAGAAAAC : 981 220 : LeuAlaLysThr : 223 ||| ||| LeuArgAspThr 980 : TTGAGagataca : 967 vulgar: NvOr174PSE 157 223 . LHQN01027734.1 1164 966 - 108 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 967 1164 108 - . gene_id 1 ; sequence NvOr174PSE ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 967 1164 . - . LHQN01027734.1 exonerate:protein2genome:local exon 967 1164 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 967 1164 108 - . alignment_id 1 ; Query NvOr174PSE ; Align 1165 158 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr173 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 121 -> 216 Target range: 5705 -> 5426 122 : TyrLeuValLeuPheTyrThrValTyrValPheLeuAlaTrpValThrCysAsnPheValPr : 142 !:!! ! !! !||| ! ! !|||:!!:!!! |||..! !.! !! !! ! !:!!|| PheCysPheThrPheGluLysValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuPr 5705 : TTCTGTTTCACGTTTGAAAAAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCC : 5645 143 : oPheIleProProLeuLeuAspIleLeuLeuProLeuGluAsnGlyThrHisAspLeuValT : 163 ||||:!: !!|||:!!||||||||||||:!!|||||| |||! !|||!..! ! !:!!! oPheValSerProIleLeuAspIleLeuMetProLeu---AsnGluThrArgAlaArgLeuP 5644 : GTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTG---AACGAGACGCGAGCACGGTTGT : 5585 164 : yrProPheTyrAlaAspTyrValPhePheLysGlnThrAspTyrHisTyrGluSerCysLeu : 183 :! !!||| !!! !||| !||| !! ! :!! ! ! |||!.!||| !! ! ! he---ValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuIleValGly 5584 : TC---GTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGG : 5528 184 : HisValPhePheValTyrPheGlyThrThrSerLeuPheAlaGlyMetAspThrIleTyrVa : 204 |||:!!!:!.!!||| ! ! !! !|||:!!|||..!!.! |||.!!! !||||| HisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrVa 5527 : CATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGT : 5465 205 : lAlaThrValLysHisSerCysGlyLeuPheAlaIle : 216 | !.!!|||:!!|||:!!|||||||||!!.|||||| lTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 5464 : GTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 5427 vulgar: NvOr173 121 216 . LHQN01028732.1 5705 5426 - 122 M 33 99 G 1 0 M 8 24 G 1 0 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5427 5705 122 - . gene_id 1 ; sequence NvOr173 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5427 5705 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5427 5705 . - . insertions 0 ; deletions 2 LHQN01028732.1 exonerate:protein2genome:local similarity 5427 5705 122 - . alignment_id 1 ; Query NvOr173 ; Align 5706 122 99 ; Align 5607 156 24 ; Align 5583 165 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr164PSE Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 7 -> 75 Target range: 5663 -> 5462 8 : AlaAlaTyrAlaSerLeuProSerPheGlyProValIleMetAsnIleLeuPheProLeuAs : 28 ||| !!:! !!!!||||||! ! ! ..!||| |||:!!:!!||||||.!.|||||||| AlaLeuPheMetCysLeuProPheValSerPro---IleLeuAspIleLeuMetProLeuAs 5663 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCG---ATTCTGGACATCCTTATGCCGTTGAA : 5606 29 : nGluThrArgArgLysGlnLeuProAlaProAlaGluTyrPheValAspGluGluLysTyrL : 49 |||||||||| !::! !!!! ! !|||||| ! |||||||||||||||!!:||||||! nGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrA 5605 : CGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATC : 5543 50 : euTyrIleLeuPheLeuHisGlyMetIleCysCysIlePheValProIleLeuTyrValThr : 69 !|||:!::!! ! !||| ! :!! :!!.!.:!! ! !:!!!:! !.!! rgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 5542 : GTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 5483 70 : IleAspSerMetHisVal : 75 !|||:!!! :!!||| CysAspAlaAsnTyrVal 5482 : TGCGATGCCAATTACGTG : 5463 vulgar: NvOr164PSE 7 75 . LHQN01028732.1 5663 5462 - 114 M 11 33 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5463 5663 114 - . gene_id 1 ; sequence NvOr164PSE ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5463 5663 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5463 5663 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5463 5663 114 - . alignment_id 1 ; Query NvOr164PSE ; Align 5664 8 33 ; Align 5631 20 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr164PSE Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 3 -> 55 Target range: 1878 -> 1722 4 : ValPheAlaLeuAlaAlaTyrAlaSerLeuProSerPheGlyProValIleMetAsnIleLe : 24 :!!||| !! !|||||| !! !! ! ! !!|||!.!|||:!!|||:!!:!!|||! LeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAspIleCy 1878 : TTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTG : 1818 25 : uPheProLeuAsnGluThrArgArgLysGlnLeuProAlaProAlaGluTyrPheValAspG : 45 ! |||||||||:!!||||||!:!::: !!!! ! !|||||| ! |||!:::!!||| sAlaProLeuAsnLysThrArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspP 1817 : CGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATC : 1755 46 : luGluLysTyrLeuTyrIleLeuPheLeuHis : 55 |||:!!|||! ! |||:!!.!.:!!||| roGluGlnTyrTyrMetIleMetIleIleHis 1754 : CTGAGCAATACTACATGATAATGATAATACAC : 1723 vulgar: NvOr164PSE 3 55 . LHQN01028732.1 1878 1722 - 102 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1723 1878 102 - . gene_id 2 ; sequence NvOr164PSE ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 1723 1878 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1723 1878 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1723 1878 102 - . alignment_id 2 ; Query NvOr164PSE ; Align 1879 4 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr174PSE Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 119 -> 214 Target range: 5705 -> 5426 120 : PheAlaSerLeuPheTyrThrPheTyrValPheTrpAlaTrpAlaThrTyrAsnMetMetPr : 140 |||..!! ! !||| ! ! ! ! :!!:!!! ! ..! ||| !!:!! :!!|| PheCysPheThrPheGluLysValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuPr 5705 : TTCTGTTTCACGTTTGAAAAAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCC : 5645 141 : oPheLeuProProIleLeuAspIleValLeuProLeuProAsnGlySerHisProLeuLeuL : 161 ||||:!! !!|||||||||||||||:!!:!!|||||| !.!. ! !! ! !|||!!!: oPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheV 5644 : GTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCG : 5582 162 : euProPheTyrAlaAsnTyrIlePhePheGluGlnLeuAspTyrHisTyrGluThrAlaLeu : 181 !! ||| !! !||| !||| !!!!::!! ! ! |||!.!||| !! !!.! ! al------TyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuIleValGly 5581 : TC------TATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGG : 5528 182 : HisAlaPhePheValTyrPhePheAlaThrSerLeuPheAlaGlyIleAspThrIleTyrVa : 202 ||| !!:!.!!||| ! .!. !! !|||:!!|||..!!.! !|||.!!! !||||| HisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrVa 5527 : CATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGT : 5465 203 : lSerThrValLysHisThrCysGlyLeuPheAlaIle : 214 |! !.!!|||:!!|||.!!|||||||||!!.|||||| lTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 5464 : GTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 5427 vulgar: NvOr174PSE 119 214 . LHQN01028732.1 5705 5426 - 122 M 42 126 G 2 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5427 5705 122 - . gene_id 1 ; sequence NvOr174PSE ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5427 5705 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5427 5705 . - . insertions 0 ; deletions 2 LHQN01028732.1 exonerate:protein2genome:local similarity 5427 5705 122 - . alignment_id 1 ; Query NvOr174PSE ; Align 5706 120 126 ; Align 5580 164 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr170 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 145 -> 280 Target range: 5687 -> 5199 146 : SerIleTyrAlaAlaMetSerCysLeuLeuPheValThrLeuProAlaValIleProMetIl : 166 !.!:!::!! !:!!:!:!!!..! !||||||:!! !|||||| !||| ||| || LysValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerPro---Il 5687 : AAAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCG---AT : 5630 167 : eLeuAsnIleIleLeuThrArgAsnGluThrPheLysLysSerLeuCysIleTyrCysGluT : 187 ||||:!!|||:!!:!! !! !||||||||| !::!! !!!! ! ! ..! ! | eLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrT 5629 : TCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACT : 5567 188 : yrTyrIleAspGlnAspLysTyrPhePheTyrIlePheLeuHisHisIleIleAlaGlyIle : 207 ||!:!:!!|||:!!||||||||| !!:!! ||| ! !||| !:!!!.!! !:!! yrPheValAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValVal 5566 : ATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTA : 5507 208 : AlaThrIlePheLeuThrIleGlyIleAspThrSerTyrValAsnCysValGlnHisValLe : 228 ! !|||! !:!! ! !!.! !|||.!!!:!|||||| !!..!|||||||||!.!! MetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCy 5506 : ATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTG : 5444 229 : uAlaLeuPheAsnValSer{Ar} >>>> Target Intron 1 >>>> {g}TyrArgL : 238 !!.!|||!!. !:!!:!!{ !} 92 bp {!}||||||! sGlyLeuLeuAlaIleAla{Gl}++ ++{y}TyrArgP 5443 : CGGATTGTTGGCCATTGCA{GG}gt.........................ag{A}TATCGTT : 5322 239 : euLysValAlaPheAspThrIleHisHisSerLysLysAsnAspTyrAsnLeuLysThrLeu : 258 !!||| !|||! ! !! !:!! ! ! :!!:!!!!: ! .!. ! !! !:!! heLysTyrAlaCysTyrGluVal------IleProGluAspGluLysGluAlaValLysMet 5321 : TTAAATACGCGTGCTATGAGGTA------ATACCCGAGGATGAGAAGGAAGCTGTGAAGATG : 5268 259 : GluAsnAsnValHisSerTyrValValSerSerIleArgLeuHisGlnArgSerIleLysPh : 279 !!!.!!.:!!:!!!!! !!||| ! !|||||||||:!!|||||||||:!!:!!:!!! MetLysLysMetTyrArgAsnValCysHisSerIleArgIleHisGlnArgAlaLeuGlnSe 5267 : ATGAAAAAGATGTATAGAAATGTTTGTCATTCGATTCGAATACATCAACGTGCTTTACAGTc : 5205 280 : eVal : 280 ||| rVal 5204 : ggta : 5200 vulgar: NvOr170 145 280 . LHQN01028732.1 5687 5199 - 126 M 19 57 G 1 0 M 69 207 S 0 2 5 0 2 I 0 88 3 0 2 S 1 1 M 10 30 G 2 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5200 5687 126 - . gene_id 1 ; sequence NvOr170 ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 5422 5687 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5422 5687 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local splice5 5420 5421 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 5330 5421 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 5330 5331 . - . intron_id 0 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 5200 5329 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5200 5329 . - . insertions 0 ; deletions 2 LHQN01028732.1 exonerate:protein2genome:local similarity 5200 5687 126 - . alignment_id 1 ; Query NvOr170 ; Align 5688 146 57 ; Align 5631 166 207 ; Align 5329 236 30 ; Align 5299 248 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr168 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 144 -> 222 Target range: 5657 -> 5426 145 : PheValThrLeuProSerAlaValProLeuMetLeuAspLeuIleLeuProLeuAsnGluSe : 165 |||:!! !||||||! !!.! !|||:!! ||||||:!!:!!:!!||||||||||||!! PheMetCysLeuProPheValSerProIle---LeuAspIleLeuMetProLeuAsnGluTh 5657 : TTTATGTGCTTGCCGTTCGTGTCGCCGATT---CTGGACATCCTTATGCCGTTGAACGAGAC : 5600 166 : rArgGlyValAsnLeuCysTyrTyrAlaGluTyrPheIleAspGlnGlnLysTyrPheIleT : 186 !|||!.! ! !!! !||| ||| ! ||||||:!!|||:!!.!.|||||| ! !! rArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrL 5599 : GCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACT : 5537 187 : yrLeuLeuLeuHisThrPheIleCysValSerPheThrIleLeuIleValThrAlaValAsp : 206 :!!:!! !|||! !!:!:!! ||| !.!. !|||! !:!! !! !||| !||| euIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAsp 5536 : TGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGAT : 5477 207 : SerThrPheValSerIleValTyrHisAlaValGlyLeuPheAspIle : 222 :!!!.!!:!|||! ! !||| ! |||||| !||||||!!.! !||| AlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 5476 : GCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 5427 vulgar: NvOr168 144 222 . LHQN01028732.1 5657 5426 - 132 M 10 30 G 1 0 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5427 5657 132 - . gene_id 1 ; sequence NvOr168 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5427 5657 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5427 5657 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5427 5657 132 - . alignment_id 1 ; Query NvOr168 ; Align 5658 145 30 ; Align 5628 156 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 198 Query range: 60 -> 252 Target range: 5976 -> 5315 61 : ThrValThrPheGluAsnThrValSerValMetPheAlaIleGlyCysCysAlaLysTyrVa : 81 |||:!!:!!! !||| ! !! !|||...!:!:!! !..!||| ! !!!.! :! ThrIleSer***ThrAsnGlnArg***ValGlnTyrSerProSerCysLeuLeuAsnSerIl 5976 : ACTATTTCATAAACGAATCAGAGGTAAGTGCAATACTCTCCATCGTGTCTTCTTAACTCAAT : 5916 82 : lValThrTyrThrSerSerGlnArgLeuValArgLeuPheLysGlnIleAlaSerAspTrpG : 102 ! !:!! .!!|||!.! !:!||| ! !|||.!! !:!!||| !..!||||||: eLysSerProAlaSerLysPheGlnLeuLysTyrLeuLeuGlyLysIleTyrGluAspTrpA 5915 : CAAATCACCAGCTTCGAAATTTCAGCTGAAATATCTTCTTGGAAAGATCTACGAAGACTGGA : 5853 103 : lnArgIleThrAspThrThrGluLeuSerIleLeuThrLysTyrSerGluLysGlyLysPhe : 122 :! !!!:|||... ! !|||! !!.!|||:!!|||||||||:!!|||||||||! ||| rgAlaMetThrSerGluAspGluTyrLysIleMetThrLysTyrAlaGluLysGlyIlePhe 5852 : GAGCCATGACGTCGGAGGATGAGTACAAGATCATGACGAAATACGCGGAGAAAGGGATTTTC : 5793 123 : LeuIleThrPheTyrGln{V} >>>> Target Intron 1 >>>> {al}TyrValTr : 132 !:!!! !.!!||| {:} 88 bp {!!}:!!:!!! SerValIleLeuTyrIle{L}++ ++{eu}HisIleSe 5792 : AGTGTCATACTCTATATT{C}gt.........................ag{TG}CATATATC : 5675 133 : pPheGlyTrpThrValTyrThrLeuMetProPheIleProTyrPheLeuAspLysValSerP : 153 !!!. !! .!!:!!!:!! !! !:!!||||||:!: !! .!!||||||! :!!! !| rLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetP 5674 : GTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGC : 5612 154 : roLeuAsnGluSerArgProLeuLeuMetProPheTyrAlaAspTyrIleValPheAspGln : 173 |||||||||||!!!||| !!! !|||.!. !!:! ||| !!|||.!!||| |||:!! roLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal---AspGlu 5611 : CGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC---GACGAG : 5555 174 : AlaAspTyrHisTyrThrSerCysPheHisIleAlaPheValTyrIleSerSerAlaLeuLe : 194 ! ! ! |||!.!||| !! ! |||!!: !.!!||| :!!! ! ! !! !:! AspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerVa 5554 : GACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGT : 5492 195 : uPheCysGlyValAspAlaThrPheValMetSerValGlnHisThrCysGlyLeuPheAlaI : 215 !||||||!.! !||||||!.!!:!||| :!!|||||||||.!!|||||||||!!.|||| lPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaI 5491 : TTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCA : 5429 216 : leIleCysHisArgLeuGluGlyGluLysIleLysLysGluSerGluTyrAlaGlnAsnVal : 235 || ! ! ! !:!!:!!|||:!! !!!::!!!!.! ! ! ||| !.!. !||| leAlaGly***LeuValGlnGlyGlnLeuMetGluAsnGlyPheLeuTyrArgAsnPheVal 5428 : TTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAATGGTTTTCTTTATAGAAATTTCGTT : 5369 236 : MetLysThrLeuSerGluGluGluLeuArgGluValValIlePheHisAsn : 252 !|||:!!|||.!..!.! !! ! !|||! !||| !! ||| GlyPheCysLeuAlaGluAsnAsnCysLeuLeuValAspIleValLeuAsn 5368 : GGCTTTTGTTTAGCTGAAAACAATTGTCTTTTGGTAGATATCGTTTTAAAT : 5316 vulgar: NvOr175 60 252 . LHQN01028732.1 5976 5315 - 198 M 68 204 S 0 1 5 0 2 I 0 84 3 0 2 S 1 2 M 41 123 G 1 0 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5316 5976 198 - . gene_id 1 ; sequence NvOr175 ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 5772 5976 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5772 5976 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 5770 5771 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 5684 5771 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 5684 5685 . - . intron_id 0 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 5316 5683 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5316 5683 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5316 5976 198 - . alignment_id 1 ; Query NvOr175 ; Align 5977 61 204 ; Align 5682 130 123 ; Align 5559 172 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr175 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 327 -> 387 Target range: 1507 -> 1242 328 : ValPheLeuAlaAlaTyrCysSerLysTrpTyrValIleSerThrSerAlaArgAlaPheIl : 348 :!! !!|||..! !||| |||:!!|||||| !.!!!!! !!!!!.!!!:!|||!!. LeuValLeuCysArgTyrGluSerGlnTrpTyrAsnPheThrProArgThrGlnAlaLeuTy 1507 : CTTGTCCTTTGCAGATACGAATCGCAGTGGTATAATTTCACTCCTAGAACACAAGCGTTGTA : 1447 349 : eLysIleIleMetValArgAlaLeuGluProCysArgLeuThrAlaGlyGlyLeuSerThrL : 369 ! !:!: !:!! !!!!..!|||.!.||| !! !|||||||||||||||:!!!!!|||| rValLeuAlaLeuArgSerCysLeuAsnProProLeuLeuThrAlaGlyGlyMetThrThrL 1446 : TGTATTGGCATTGAGAAGCTGCCTAAACCCACCTCTGTTAACAGCTGGTGGGATGACGACGT : 1384 370 : euCysMetGluSerPheGlyIle >>>> Target Intron 1 >>>> LeuIleLysT : 380 || !:!:..!||||||!.! 85 bp :!!||||||. euAsnLeuArgSerPheAlaGlu++ ++IleIleLysA 1383 : TGAATCTACGATCGTTCGCAGAGgt.........................agATCATCAAAG : 1266 381 : hrSerValSerTyrPheThrVal : 387 !!||||||||||||!:!|||||| laSerValSerTyrTyrThrVal 1265 : CATCTGTTTCCTACTACACGGTG : 1243 vulgar: NvOr175 327 387 . LHQN01028732.1 1507 1242 - 110 M 49 147 5 0 2 I 0 81 3 0 2 M 11 33 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1243 1507 110 - . gene_id 2 ; sequence NvOr175 ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 1361 1507 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1361 1507 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 1359 1360 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 1276 1360 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 1276 1277 . - . intron_id 0 ; splice_site "AG" LHQN01028732.1 exonerate:protein2genome:local cds 1243 1275 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1243 1275 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1243 1507 110 - . alignment_id 2 ; Query NvOr175 ; Align 1508 328 147 ; Align 1276 377 33 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr167 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 130 -> 219 Target range: 5687 -> 5426 131 : SerValTyrValAsnPheAlaGlyValGlyPheAlaThrLeuProGlyThrLeuProThrIl : 151 !.!|||:!!:!!:::!!...!!.!!.! !||| ! !|||||| !..!! !||| || LysValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerPro---Il 5687 : AAAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCG---AT : 5630 152 : eLeuAsnIleIleAlaProLeuAsnGluSerArgProThrLysValLeuCysPheTyrAlaG : 172 ||||:!!|||:!! !||||||||||||!!!||| .!!::!:!!!!! !!:! ||| eLeuAspIleLeuMetProLeuAsnGluThrArg---AlaArgLeuPheValTyrProAlaT 5629 : TCTGGACATCCTTATGCCGTTGAACGAGACGCGA---GCACGGTTGTTCGTCTATCCAGCTT : 5570 173 : luTyrPheIleAspGlnGluGluTyrTyrTyrGlnLeuLeuPheGlnThrPheIleGlyVal : 192 ! ||||||:!!|||:!!!!::!!||| !||| !:!!:!! !!.! !!:!:!!! !||| yrTyrPheValAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValVal 5569 : ACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTG : 5510 193 : MetSerThrValPheIleAsnAlaThrValAspThrLeuTyrValIleCysAlaHisHisSe : 213 :!:! ! !:!!! !:!! !..!.!! !|||.!! !|||||| !..!!.!!!.|||:! ValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAl 5509 : GTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGC : 5447 214 : rAspGlyLeuPheAsnIle : 219 ! !||||||!!. !||| aCysGlyLeuLeuAlaIle 5446 : TTGCGGATTGTTGGCCATT : 5427 vulgar: NvOr167 130 219 . LHQN01028732.1 5687 5426 - 105 M 19 57 G 1 0 M 12 36 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5427 5687 105 - . gene_id 1 ; sequence NvOr167 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5427 5687 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5427 5687 . - . insertions 0 ; deletions 2 LHQN01028732.1 exonerate:protein2genome:local similarity 5427 5687 105 - . alignment_id 1 ; Query NvOr167 ; Align 5688 131 57 ; Align 5631 151 36 ; Align 5595 164 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr169INT Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 99 -> 187 Target range: 5693 -> 5426 100 : PheTyrThrAlaTyrIleHisIleCysMetPhePhePheValTrpSerProAlaLeuGlyPr : 120 ||| ! ! !!.!:!!||| :!!||| !.!.|||:!!!! ! !||| !:!!..!|| PheGluLysValHisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerPr 5693 : TTTGAAAAAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCC : 5633 121 : oMetIle<->LeuAsnThrPheSerAsnAlaThrTyrLysLysSerIleCysIleAspAlaG : 140 |!!::!: :!! !! ! ! !|||! !||| !::!! !.!! ! ! ||| oIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaT 5632 : GATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTT : 5570 141 : luTyrPheValAspGlnAspGluTyrPheSerTyrIlePheSerHisThrValPheValSer : 160 ! ||||||||||||:!!|||:!!||| !! !! ||| ! .!!|||! ! !.!!||| ! yrTyrPheValAspGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValVal 5569 : ACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTG : 5510 161 : LeuLeuSerAlaSerIleLeuThrAlaPheAspSerThrPheValLeuIleThrGlnHisGl : 181 :!!:!! ! !|||:!!!!! !|||! !|||:!!!.!!:!|||! ! !..!||||||!. ValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAl 5509 : GTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGC : 5447 182 : yIleGlyLeuLeuHisVal : 187 ! !||||||||| !:!! aCysGlyLeuLeuAlaIle 5446 : TTGCGGATTGTTGGCCATT : 5427 vulgar: NvOr169INT 99 187 . LHQN01028732.1 5693 5426 - 106 M 23 69 G 0 3 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5427 5693 106 - . gene_id 1 ; sequence NvOr169INT ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5427 5693 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5427 5693 . - . insertions 3 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5427 5693 106 - . alignment_id 1 ; Query NvOr169INT ; Align 5694 100 69 ; Align 5622 123 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr196 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 128 -> 221 Target range: 33694 -> 33418 129 : PheAsnHisIleTyrAlaAlaTyrLeuIleIleValValValMetPheAsnLeuSerPhe : 148 |||::: :::...||| !! !:!:.!! ! !:!!||||||!:!! !:!! ! PheSerSerAsnPheThrAlaAsnGlyValPheCysTyrIleMetPheSerSerAlaPro 33694 : ttttcttcaaatttcacagCAAACGGAGTGTTTTGCTACATCATGTTCAGCTCGGCGCCT : 33637 149 : TyrGlnProHisPheLeuAspLeuIleMetProLeuAsnGluSerArgProArgProIle : 168 !:! !|||||||||:!!|||:!! :!! !! !|||||||||||| ! ! !:!: PheIleProHisPheIleAspValAlaLeuSerLysAsnGluSerArgLysLeuSerLeu 33636 : TTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAACGAGTCACGAAAATTAAGTTTG : 33577 169 : ProArgLeuAlaArgTyrTyrValThrSerLeuAspGluSerPheAsnPheValValLeu : 188 ! !! !||| ||||||! !! !..!! !|||::: ::: ::::::::: ! MetTyrProAla---TyrTyrGlyIleAspGlnAspLysTyrTyrTyrTyrLeuMetAla 33576 : ATGTACCCTGCC---TATTACGGCATTGACCAGGacaagtattattattatctaatgGCT : 33520 189 : HisGlyLeuValIleAspTrpTyrSerMetIlePhePheLeuGlyHisAspThrLeuLeu : 208 ||| !:!! ! !! !.!..!! ! |||:!!..! !||||||:!!! ! HisMetMetSerAlaGlyAlaAlaValPhePheValPheMetSerCysAspThrIleTyr 33519 : CACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATGTCCTGCGACACGATTTAT : 33460 209 : ValAsnCysAlaGlnHisAlaCysAlaLeuPheLysIle : 221 :!!||| !!.!||||||||||||!.!|||!!. ||| MetAsnIleValGlnHisAlaCysGlyLeuLeuPheIle 33459 : ATGAATATCGTTCAACACGCGTGCGGATTGTTGTTCATT : 33419 vulgar: NvOr196 128 221 . KQ414772.1 33694 33418 - 107 M 44 132 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33419 33694 107 - . gene_id 1 ; sequence NvOr196 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33419 33694 . - . KQ414772.1 exonerate:protein2genome:local exon 33419 33694 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 33419 33694 107 - . alignment_id 1 ; Query NvOr196 ; Align 33695 129 132 ; Align 33563 174 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr192 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 328 -> 383 Target range: 1345564 -> 1345723 329 : SerMetLeuIleTyrGluAlaCysTyrAlaThrAsnTrpTyrArgLysAspPheSe : 347 ||| !!!: ! :!!||||||||| !!:!||||||||| |||!!. ! SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyr------AspLeuPr 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTAC------GATTTACC : 1345613 348 : rValArgSerLysLysIleMetAsnLeuMetMetIleArgSerGlnLysProSerT : 366 !! !!:!! !! !::! :!:! !!! !!: !||||||||||||||||||| oAspLysTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerT 1345614 : AGATAAATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGT : 1345670 367 : yrLeuThrAlaGlyLysIleTyrValLeuGlyLeuGluAsnPheAlaAlaVal : 383 |||||||||||||||||.!!||||||!!!..!||||||!..|||!.! !||| yrLeuThrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIleVal 1345671 : ACCTAACAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCGTG : 1345723 vulgar: NvOr192 328 383 . KQ414782.1 1345564 1345723 + 108 M 14 42 G 2 0 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345723 108 + . gene_id 1 ; sequence NvOr192 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345723 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345723 . + . insertions 0 ; deletions 2 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345723 108 + . alignment_id 1 ; Query NvOr192 ; Align 1345565 329 42 ; Align 1345607 345 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr196 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 328 -> 397 Target range: 1345564 -> 1345843 329 : SerLeuSerIleTyrGlnAlaCysTyrAsnCysGluTrpTyrArgAspAspIleSe : 347 |||! !..!!!: ! |||||||||||| ! !!.!.|||||| |||:!! ! SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyr------AspLeuPr 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTAC------GATTTACC : 1345613 348 : rTyrArgCysLysLysLeuLeuLysLeuMetMetAlaArgSerGlnLeuProSerA : 366 ! !!!:!! !! !::!! !|||! !!!! !!:|||||||||||| !|||||| oAspLysTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerT 1345614 : AGATAAATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGT : 1345670 367 : snLeuSerAlaGlyLysLeuTyrValLeuGlyTyrGluAsnPheAlaGln >>>> : 383 !!|||!!!|||||||||!!!||||||!!!..!! |||!..|||!.! yrLeuThrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIle++ 1345671 : ACCTAACAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCgt.... : 1345723 384 : Target Intron 1 >>>> ValLeuLysAlaSerLeuSerPhePheThrVal : 393 78 bp :!!:!!|||||||||:!!:!!!:!.!!:!!||| ++IleValLysAlaSerMetAlaTyrLeuSerVal 1345724 : .....................agATAGTAAAAGCGTCGATGGCCTATCTTTCCGTT : 1345829 394 : LeuLeuSerVal : 397 ||| !|||:!! LeuLysSerIle 1345830 : CTGAAAAGCATT : 1345843 vulgar: NvOr196 328 397 . KQ414782.1 1345564 1345843 + 109 M 14 42 G 2 0 M 38 114 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345843 109 + . gene_id 1 ; sequence NvOr196 ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345565 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345720 . + . insertions 0 ; deletions 2 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345843 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345843 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345843 109 + . alignment_id 1 ; Query NvOr196 ; Align 1345565 329 42 ; Align 1345607 345 114 ; Align 1345799 383 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr183 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 321 -> 375 Target range: 34375 -> 34537 322 : IleGlnSerCysAsnAspIleArgGluThrAlaTyrAsnValAsnTrpTyrAsnMetSer : 341 ||| ..! !!!..!!:!!:!!!.!.:!!||||||.!. !||||||||||||:!:||| IlePheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSer 34376 : ATATTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCA : 34433 342 : LeuArgAlaArgMetPheValLeuMetIleMetGlnArgThrLeuLysProValHisLeu : 361 ! !! !! ! !! !! !:!!|||.!.||||||!!.|||||| !:::|||:!! !||| ProProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeu 34434 : CCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTG : 34493 362 : ThrAlaGlyThrValValIleLeuSerMetGluAsnPheSer : 375 |||||||||! ! !! !! !!!!|||||||||! |||||| ThrAlaGlyLysPheSerThrPheSerMetGluMetPheSer 34494 : ACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGT : 34537 vulgar: NvOr183 321 375 . KQ414804.1 34375 34537 + 103 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34376 34537 103 + . gene_id 1 ; sequence NvOr183 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 34376 34537 . + . KQ414804.1 exonerate:protein2genome:local exon 34376 34537 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34376 34537 103 + . alignment_id 1 ; Query NvOr183 ; Align 34376 322 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr193 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 143 -> 215 Target range: 464624 -> 464840 144 : ValProLeuLeuLeuAspLeuLeuValProLeuAsnGluThrArgProArgProValL : 163 :!!||| !:!!||||||:!!:!!!.!||||||||||||:!!||| !!!.!! ! !| LeuProAspIleLeuAspValValAlaProLeuAsnGluSerArgSerHisGlnTyrL 464625 : TTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATGAATCTCGTTCTCATCAATACT : 464682 164 : euArgLeuMetLysTyrAsnIleGlnArgIleGluAsnAsnPhePheValThrThrLe : 182 ||! ! ! !:!!!:! !||| !! !..! |||!:!.!!|||||| !:! euIleThrAlaGluPhePheIleThrAspSerSerProAsnTyrIleValThrCysVa 464683 : TAATTACCGCGGAATTTTTCATCACTGATAGTTCGCCGAATTATATCGTAACTTGTGT : 464739 183 : uHisGlyPheValLeuAsnIleLeuGlyMetMetLeuIleMetGlyPheAspThrLeu : 201 ! ! ! !:!! ! !|||:!!|||:!:! ! !|||!!:!.!! !!!:|||!!! lGlyThrAspIleThrLeuIleMetGlyValThrThrIleIleAlaSerGluThrPhe 464740 : TGGTACGGATATTACTCTTATCATGGGAGTCACGACAATAATTGCCTCCGAAACGTTC : 464796 202 : LeuLeuAsnCysSerGlnHisAlaCysAlaLeuPheGlnIle : 215 !!!! ! !|||||| !||||||:!!|||:!!||| ThrPheLeuLeuLeuGlnHisIleCysAlaMetPheLysIle 464797 : ACTTTTTTGTTGCTGCAACATATCTGCGCAATGTTCAAAATC : 464840 vulgar: NvOr193 143 215 . KQ414815.1 464624 464840 + 102 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464625 464840 102 + . gene_id 1 ; sequence NvOr193 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464625 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464625 464840 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464625 464840 102 + . alignment_id 1 ; Query NvOr193 ; Align 464625 144 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr195 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 149 -> 219 Target range: 482034 -> 482241 150 : LeuAspPheLeuValProLeuAsnGluThrArgProArgIleIleThrLysHisMetL : 169 |||||| !!:!!||||||||||||||||||||| !!!.! !.!! !! ! |||: LeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMetG 482035 : CTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGG : 482092 170 : ysTyrAsnIleLysArgIleGluAsnAsnTyrPheValThrThrLeuHisGlyTyrVa : 188 !!||| !||| ! !:! :!! !!::: !|||:!! |||!!!||| !!:: ! luTyrPheIleAspGlnGlnLysTyrSerLeuPheIle---ThrPheHisGlnTrpPh 482093 : AGTACTTCATTGACCAGCAGAAATATTCACTTTTCATT---ACGTTTCATCAGTGGTT : 482146 189 : lPheAsnIleLeuGlyMetMetValValValGlyPheAspSerLeuLeuLeuSerTyr : 207 !! ! !:!!:!!! ! ! !:!!:!!||||||.!.!!:!!!|||:!!:!!! !!:: eSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrp 482147 : TTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGG : 482203 208 : ThrGlnHisAlaCysAlaLeuPheGlnValValArg : 219 !:!!||||||...::!|||||| :!!|||||| LeuGluHisAlaAlaSerLeuPheThrLeuValArg 482204 : CTTGAACACGCTGCAAGCTTGTTCACCCTTGTAAGG : 482241 vulgar: NvOr195 149 219 . KQ414815.1 482034 482241 + 105 M 32 96 G 1 0 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482035 482241 105 + . gene_id 1 ; sequence NvOr195 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482035 482241 . + . KQ414815.1 exonerate:protein2genome:local exon 482035 482241 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 482035 482241 105 + . alignment_id 1 ; Query NvOr195 ; Align 482035 150 96 ; Align 482131 183 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr193 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 133 -> 215 Target range: 1224276 -> 1224030 134 : ThrValValValTyrAsnThrSerAlaPheValProLeuLeuLeuAspLeuLeuVa : 152 ..!:!!:!!||||||! !:!! ! !!!!.:!! !! !:!!||||||:!!:!!!. ValLeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAspValValAl 1224276 : GTTCTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGC : 1224222 153 : lProLeuAsnGluThrArgProArgProValLeuArgLeuMetLysTyrAsnIleG : 171 !|||||||||||||||||||||||| !:!!|||! !! !:!:!..|||! .!! aProLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheI 1224221 : GCCGTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCA : 1224165 172 : lnArgIleGluAsnAsnPhePheValThrThrLeuHisGlyPheValLeuAsnIle : 189 ! ! ! .!.:!!|||!:! !..!!.!!!!||| !!:!..! ! ||| leAspGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIle 1224164 : TAGACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATT : 1224111 190 : LeuGlyMetMetLeuIleMetGlyPheAspThrLeuLeuLeuAsnCysSerGlnHi : 208 ! ! !! !|||:!!|||!!:!.! ! |||! !|||! !:!!!.! !! ! || SerCysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHi 1224110 : TCCTGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCA : 1224054 209 : sAlaCysAlaLeuPheGlnIle : 215 | !|||!.!|||||| !:!: sLeuCysGlyLeuPheAlaVal 1224053 : CCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: NvOr193 133 215 . KQ414851.1 1224276 1224030 - 106 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224276 106 - . gene_id 1 ; sequence NvOr193 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224276 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224276 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224276 106 - . alignment_id 1 ; Query NvOr193 ; Align 1224277 134 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr211 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 146 -> 225 Target range: 33649 -> 33412 147 : TyrSerLeuGluProLeuValProGlnIleLeuAspLysLeuSerProLeuAsnGluSer : 166 !:!|||! !! !|||!!!:!!|||!!..!!:!!||| !! ! !! !||||||||| PheSerSerAlaProPheIleProHisPheIleAspValAlaLeuSerLysAsnGluSer 33649 : TTCAGCTCGGCGCCTTTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAACGAGTCA : 33592 167 : ArgProIleLysThrPheLeuGluValGluTyrLeuValAspHisArgArgTyrTyrThr : 186 ||| !:!!!.. !.!.! ! !.! ! ||| !:!!|||!!. :::|||||| ArgLysLeuSerLeuMetTyrProAlaTyrTyrGlyIleAspGlnAspLysTyrTyrTyr 33591 : CGAAAATTAAGTTTGATGTACCCTGCCTATTACGGCATTGACCAGGacaagtattattat : 33532 187 : AlaIleTyrLeuHisAsnMetGlnAlaAlaCysTrpValIleLeuThrValLeuAlaIle : 206 ::: !|||! |||...|||!.!... !|||.!!!!!..! !!:!!:!! ! TyrLeuMetAlaHisMetMetSerAlaGlyAlaAlaValPhePheValPheMetSerCys 33531 : tatctaatgGCTCACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATGTCCTGC : 33472 207 : AspAlaTyrPheValMetIleValGlnHisAlaCysSerMetPheAlaValLeuGly : 225 |||.!! !!:!:!!! ||||||||||||||||||.!!:!!!!. !:!!! !||| AspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuPheIleSerGly 33471 : GACACGATTTATATGAATATCGTTCAACACGCGTGCGGATTGTTGTTCATTTCCGGG : 33413 vulgar: NvOr211 146 225 . KQ414772.1 33649 33412 - 124 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33413 33649 124 - . gene_id 1 ; sequence NvOr211 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33413 33649 . - . KQ414772.1 exonerate:protein2genome:local exon 33413 33649 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 33413 33649 124 - . alignment_id 1 ; Query NvOr211 ; Align 33650 147 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr211 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 135 -> 225 Target range: 42742 -> 42472 136 : TyrThrLeuCysIleIleGlySerLeuAlaThrTyrSerLeuGluProLeuValProGln : 155 :::|||:!! ! !||| !!!!!!!!.!!! !!:!! !! !! !|||! !:!!|||!!. PheThrValThrGlyIleCysCysPheThrMetPheIleSerAlaProTyrIleProHis 42742 : ttcacagTAACTGGAATATGTTGCTTCACAATGTTTATCTCTGCGCCTTATATACCGCAT : 42685 156 : IleLeuAspLysLeuSerProLeuAsnGluSerArgProIleLysThrPheLeuGluVal : 175 :!!! !||| :!!! ! !! !|||||||||||| !:!: !.!!! ! !.! ValTyrAspValMetLeuSerLysAsnGluSerArgLysLeuGlyPheIleTyrProAla 42684 : GTATATGATGTTATGTTATCGAAAAACGAGTCACGAAAGTTGGGTTTCATTTACCCTGCC : 42625 176 : GluTyrLeuValAspHisArgArgTyrTyrThrAlaIleTyrLeuHisAsnMetGlnAla : 195 ! ||| !||||||!!. !!:!|||||| ! !||| !|||! ! ...!.! TyrTyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAlaHisMetThrSerGly 42624 : TATTATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCTCACATGACATCTGGG : 42565 196 : AlaCysTrpValIleLeuThrValLeuAlaIleAspAlaTyrPheValMetIleValGln : 215 !.!! !|||.!!!!!||| !!:!!:!! !|||.!! !!:!:!!! ||||||||| GlyLeuValValPhePheThrPheIleSerCysAspThrIleTyrMetAsnIleValGln 42564 : GGCTTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTACATGAATATCGTGCAA : 42505 216 : HisAlaCysSerMetPheAlaValLeuGly : 225 |||||||||.!!:!!!!. !:!!! !||| HisAlaCysGlyLeuLeuLeuIleSerGly 42504 : CACGCGTGCGGATTGTTGTTGATTTCTGGG : 42473 vulgar: NvOr211 135 225 . KQ414772.1 42742 42472 - 118 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42473 42742 118 - . gene_id 2 ; sequence NvOr211 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42473 42742 . - . KQ414772.1 exonerate:protein2genome:local exon 42473 42742 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42473 42742 118 - . alignment_id 2 ; Query NvOr211 ; Align 42743 136 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr211 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 146 -> 225 Target range: 24413 -> 24176 147 : TyrSerLeuGluProLeuValProGlnIleLeuAspLysLeuSerProLeuAsnGluSer : 166 !:!!!! !! ! !!:!!..!|||!:::!!|||||| :!!|||||| !||||||||| PheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSer 24413 : TTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCG : 24356 167 : ArgProIleLysThrPheLeuGluValGluTyrLeuValAspHisArgArgTyrTyrThr : 186 ||| !:!: !.!!! ! !.!.!.||| !||||||.!...!..!:!!||| ! ArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyrTyr 24355 : CGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTACTAC : 24296 187 : AlaIleTyrLeuHisAsnMetGlnAlaAlaCysTrpValIleLeuThrValLeuAlaIle : 206 !:!: !|||! :!:...!.! ! ! |||.!!!!!..! !:!!:!! ! TyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIleSerCys 24295 : TATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGT : 24236 207 : AspAlaTyrPheValMetIleValGlnHisAlaCysSerMetPheAlaValLeuGly : 225 |||.!! !!:!:!!! ||||||||||||||||||.!!:!:!!. !:!!! !||| AspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSerGly 24235 : GACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCTGGG : 24177 vulgar: NvOr211 146 225 . KQ414772.1 24413 24176 - 116 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24177 24413 116 - . gene_id 3 ; sequence NvOr211 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24177 24413 . - . KQ414772.1 exonerate:protein2genome:local exon 24177 24413 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 24177 24413 116 - . alignment_id 3 ; Query NvOr211 ; Align 24414 147 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr211 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 144 -> 223 Target range: 20562 -> 20325 145 : AlaThrTyrSerLeuGluProLeuValProGlnIleLeuAspLysLeuSerProLeuAsn : 164 |||! !!:!! !! !! !|||!!!!.!||| |||||||||! ! !:!!||||||||| AlaIlePheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsn 20562 : GCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAAC : 20505 165 : GluSerArgProIleLysThrPheLeuGluValGluTyrLeuValAspHisArgArgTyr : 184 :!!!!!||| ! ! ! ! !!! ! !!.! ! |||! !:!!|||! !..!!:!||| LysThrArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyr 20504 : AAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATAC : 20445 185 : TyrThrAlaIleTyrLeuHisAsnMetGlnAlaAlaCysTrpValIleLeuThrValLeu : 204 |||! ! !!!: :!!|||! ||| !.!!.! ! !||| !:!!! ! !!! ! TyrMetIleMetIleIleHisIleMetPheValValIleMetValCysValIlePheCys 20444 : TACATGATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGT : 20385 205 : AlaIleAspAlaTyrPheValMetIleValGlnHisAlaCysSerMetPheAlaVal : 223 ||| !||| ! !!!:!||| !|||||||||||||||.!!:!:!!.|||||| AlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaVal 20384 : GCTTGCGACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: NvOr211 144 223 . KQ414772.1 20562 20325 - 116 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20562 116 - . gene_id 4 ; sequence NvOr211 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20562 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20562 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20326 20562 116 - . alignment_id 4 ; Query NvOr211 ; Align 20563 145 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr211 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 151 -> 225 Target range: 37991 -> 37769 152 : LeuValProGlnIleLeuAspLysLeuSerProLeuAsnGluSerArgProIleLysThr : 171 :!!..!|||!:::!!|||||| :!!|||||| !|||||||||||| !:!! ! ! IleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValAspPhe 37991 : ATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTC : 37934 172 : PheLeuGluValGluTyrLeuValAspHisArgArgTyrTyrThrAlaIleTyrLeuHis : 191 .!!! ! !.! ! ||| !:!!|||.!...!..!:!!||| ! !:!: !||| IleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHis 37933 : ATTTATCCTGCATACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCAC : 37874 192 : AsnMetGlnAlaAlaCysTrpValIleLeuThrValLeuAlaIleAspAlaTyrPheVal : 211 ! :!: !.! ! ! |||.!!!!!..! !:!!:!! !|||.!! !!:!:!! MetLeuCysValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMet 37873 : ATGCTCTGCGTGATAACTGTAGTGTTTTTCGTGTACATCTCCTGTGACACGATCTACATG : 37814 212 : MetIleValGlnHisAlaCysSerMetPheAlaValLeuGly : 225 ! ||||||||||||||||||.!!:!:.!. !|||! !||| SerIleValGlnHisAlaCysGlyLeuLeuAsnValSerGly 37813 : AGCATCGTTCAACACGCGTGCGGATTACTGAACGTCTCTGGG : 37770 vulgar: NvOr211 151 225 . KQ414772.1 37991 37769 - 114 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37770 37991 114 - . gene_id 5 ; sequence NvOr211 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37770 37991 . - . KQ414772.1 exonerate:protein2genome:local exon 37770 37991 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 37770 37991 114 - . alignment_id 5 ; Query NvOr211 ; Align 37992 152 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr211 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 151 -> 225 Target range: 29577 -> 29355 152 : LeuValProGlnIleLeuAspLysLeuSerProLeuAsnGluSerArgProIleLysThr : 171 :!!..!|||!:::!!|||||| :!!|||||| !|||||||||||| !:!: ! IleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValGlyPhe 29577 : ATAACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTGGGCTTC : 29520 172 : PheLeuGluValGluTyrLeuValAspHisArgArgTyrTyrThrAlaIleTyrLeuHis : 191 .!!! ! !.! ! ||| !:!!|||.!...!..!:!!||| ! !:!: !||| IleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrTyrLeuMetGlyHis 29519 : ATTTATCCTGCATACTACGGTCTTGACGAAGAGGAGCATTACTACTATCTGATGGGTCAC : 29460 192 : AsnMetGlnAlaAlaCysTrpValIleLeuThrValLeuAlaIleAspAlaTyrPheVal : 211 ! :!:...!.! ! ! |||.!!!!!..! !:!!:!! !|||.!! !!:!:!! MetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMet 29459 : ATGCTTTCCGTGATAACCGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATCTATATG : 29400 212 : MetIleValGlnHisAlaCysSerMetPheAlaValLeuGly : 225 ! :!!|||||||||||||||.!!:!:!!. !|||! !||| AsnValValGlnHisAlaCysGlyLeuLeuAsnValSerGly 29399 : AATGTCGTGCAACACGCGTGTGGATTATTGAACGTCTCTGGG : 29356 vulgar: NvOr211 151 225 . KQ414772.1 29577 29355 - 113 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29356 29577 113 - . gene_id 6 ; sequence NvOr211 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29356 29577 . - . KQ414772.1 exonerate:protein2genome:local exon 29356 29577 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 29356 29577 113 - . alignment_id 6 ; Query NvOr211 ; Align 29578 152 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr203 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 150 Query range: 136 -> 230 Target range: 24419 -> 24137 137 : IleSerTyrMetValLeuProLeuThrProIleIleLeuAspPheIleValProLeuAsn : 156 :!! !!:!! !.!:!! !!:!!|||||| !:!!||||||.!!||| !||| !||| ValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 24419 : GTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAAC : 24362 157 : GluSerArgProLysGlnProLeuIleMetAlaGluPhePheIleAspGlnAspLysTyr : 176 ||||||||| ! ! !:!! ! |||.!.!:! !:!!|||:!!!!::!!:!! GluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHis 24361 : GAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCAT : 24302 177 : PheTyrProLeuMetIleHisAlaTyrLeuSerValLeuTyrGlyIleIleProLeuLeu : 196 !:!||| !|||||| !||| ! !! ! !:!! ! !! !.!!.!! !! !:!! TyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIle 24301 : TACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATC : 24242 197 : GlyThrAspThrLeuTyrMetAsnCysValHisHisSerCysGlyMetLeuLysIleLeu : 216 ..! !||||||:!!||||||||| !|||!!.|||:!!||||||:!:|||!!.:!!! ! SerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSer 24241 : TCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCT : 24182 217 : GlyAsnArgIleArgAsnIleLeuAsnSerSerSerArgGlu : 230 ||| ! !||| !!.. !! !:::|||! !.!!|||||| Gly***AlaIlePheArgCysTyrSerSerIleGlyArgGlu 24181 : GGGTAAGCAATTTTCAGATGTTACTCGAGTATCGGGCGGgaa : 24138 vulgar: NvOr203 136 230 . KQ414772.1 24419 24137 - 150 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24138 24419 150 - . gene_id 1 ; sequence NvOr203 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24138 24419 . - . KQ414772.1 exonerate:protein2genome:local exon 24138 24419 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 24138 24419 150 - . alignment_id 1 ; Query NvOr203 ; Align 24420 137 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr203 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 149 Query range: 103 -> 217 Target range: 33758 -> 33412 104 : SerLeuGluAspAspSerGluIleLysIleLeuSerTyrTyrAlaArgLeuGlyLysLeu : 123 |||:!!|||||| :::||||||... !! !||| ! !||| ||| SerValGluAspArgAsnGluIleSerSerHisPheTyrProIleLeuLeuTyrCysLeu 33758 : TCCGTAGAAGAtcggaatgaaatttcttctcaCTTCTACCCGATATTATTGTActgttta : 33701 124 : PheAsnPheMetTyrIleGlyAlaValTyrSerAlaLeuIleSerTyrMetValLeu--- : 143 ||| |||... ... ::! ! |||!.!|||:!! !:!!:!: !|||### PheIlePhePheLysPheHisSerLysArgSerValLeuLeuHisHisValGlnLeu### 33700 : ttcattttcttcaaatttcacagCAAACGGAGTGTTTTGCTACATCATGTTCAGCTCGGC : 33640 144 : -ProLeuThrProIleIleLeuAspPheIleValProLeuAsnGluSerArgProLysGl : 162 #|||!!!! !||| !.!!:!!||| !! :!! !! !|||||||||||| ! !.. #ProPheIleProHisPheIleAspValAlaLeuSerLysAsnGluSerArgLysLeuSe 33639 : GCCTTTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAACGAGTCACGAAAATTAAG : 33580 163 : nProLeuIleMetAlaGluPhePheIleAspGlnAspLysTyrPheTyrProLeuMetIl : 182 . !:!! ! ||| ! !:! !||||||||||||||||||:::||| |||||| rLeuMetTyrProAlaTyrTyrGlyIleAspGlnAspLysTyrTyrTyrTyrLeuMetAl 33579 : TTTGATGTACCCTGCCTATTACGGCATTGACCAGGacaagtattattattatctaatgGC : 33520 183 : eHisAlaTyrLeuSerValLeuTyrGlyIleIleProLeuLeuGlyThrAspThrLeuTy : 202 !||| ! !:!!! ! ! ! !.!!.!! !!!!:!!..! !||||||:!!|| aHisMetMetSerAlaGlyAlaAlaValPhePheValPheMetSerCysAspThrIleTy 33519 : TCACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATGTCCTGCGACACGATTTA : 33460 203 : rMetAsnCysValHisHisSerCysGlyMetLeuLysIleLeuGly : 217 ||||||| !|||!!.|||:!!||||||:!!||| |||! !||| rMetAsnIleValGlnHisAlaCysGlyLeuLeuPheIleSerGly 33459 : TATGAATATCGTTCAACACGCGTGCGGATTGTTGTTCATTTCCGGG : 33413 vulgar: NvOr203 103 217 . KQ414772.1 33758 33412 - 149 M 39 117 F 0 4 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33413 33758 149 - . gene_id 2 ; sequence NvOr203 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33413 33758 . - . KQ414772.1 exonerate:protein2genome:local exon 33413 33758 . - . insertions 0 ; deletions 0 ; frameshifts 4 KQ414772.1 exonerate:protein2genome:local similarity 33413 33758 149 - . alignment_id 2 ; Query NvOr203 ; Align 33759 104 117 ; Align 33638 143 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr203 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 142 Query range: 136 -> 230 Target range: 29598 -> 29316 137 : IleSerTyrMetValLeuProLeuThrProIleIleLeuAspPheIleValProLeuAsn : 156 :!!! !!:!! !:!! !!:!!|||||| !:!!||||||.!!||| !||| !||| ValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 29598 : GTTATATTCACCTCAGTGGCGATAACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAAC : 29541 157 : GluSerArgProLysGlnProLeuIleMetAlaGluPhePheIleAspGlnAspLysTyr : 176 ||||||||| ! ! !:!! ! ||| ! !:! !:!!|||:!!!!::!!:!! GluSerArgGlyValGlyPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHis 29540 : GAATCGCGCGGAGTGGGCTTCATTTATCCTGCATACTACGGTCTTGACGAAGAGGAGCAT : 29481 177 : PheTyrProLeuMetIleHisAlaTyrLeuSerValLeuTyrGlyIleIleProLeuLeu : 196 !:!||| !|||||| !||| ! !! ! !:!! ! !! !.!!.!! !! !:!! TyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIle 29480 : TACTACTATCTGATGGGTCACATGCTTTCCGTGATAACCGTCGTGTTTTTCGTCTACATC : 29421 197 : GlyThrAspThrLeuTyrMetAsnCysValHisHisSerCysGlyMetLeuLysIleLeu : 216 ..! !||||||:!!||||||||| !|||!!.|||:!!||||||:!:|||!!.:!!! ! SerCysAspThrIleTyrMetAsnValValGlnHisAlaCysGlyLeuLeuAsnValSer 29420 : TCCTGTGACACGATCTATATGAATGTCGTGCAACACGCGTGTGGATTATTGAACGTCTCT : 29361 217 : GlyAsnArgIleArgAsnIleLeuAsnSerSerSerArgGlu : 230 ||| ! ! !||| !!.. !! !:::|||! !! !|||||| Gly***ThrIlePheArgCysTyrSerSerIle***ArgGlu 29360 : GGGTAAACAATTTTCAGATGTTACTCGAGTATCTAACGGGAA : 29317 vulgar: NvOr203 136 230 . KQ414772.1 29598 29316 - 142 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29317 29598 142 - . gene_id 3 ; sequence NvOr203 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29317 29598 . - . KQ414772.1 exonerate:protein2genome:local exon 29317 29598 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 29317 29598 142 - . alignment_id 3 ; Query NvOr203 ; Align 29599 137 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr203 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 124 -> 217 Target range: 42751 -> 42472 125 : AsnPheMetTyrIleGlyAlaValTyrSerAlaLeuIleSerTyrMetValLeuProLeu : 144 :::|||:::::: !.!!! ! !!!..!!!!! !! !!:!!!: ! !|||! ! SerPheIlePheThrValThrGlyIleCysCysPheThrMetPheIleSerAlaProTyr 42751 : tctttcattttcacagTAACTGGAATATGTTGCTTCACAATGTTTATCTCTGCGCCTTAT : 42694 145 : ThrProIleIleLeuAspPheIleValProLeuAsnGluSerArgProLysGlnProLeu : 164 ! !||| !:!!! !||| !!!!::!! !! !|||||||||||| ! ! !:!! IleProHisValTyrAspValMetLeuSerLysAsnGluSerArgLysLeuGlyPheIle 42693 : ATACCGCATGTATATGATGTTATGTTATCGAAAAACGAGTCACGAAAGTTGGGTTTCATT : 42634 165 : IleMetAlaGluPhePheIleAspGlnAspLysTyrPheTyrProLeuMetIleHisAla : 184 ! ||| ! !:! !:!!|||||||||||||||!:!||| !:!!!!: !||| ! TyrProAlaTyrTyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAlaHisMet 42633 : TACCCTGCCTATTATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCTCACATG : 42574 185 : TyrLeuSerValLeuTyrGlyIleIleProLeuLeuGlyThrAspThrLeuTyrMetAsn : 204 ! !.!!! !||| ! !.!!.!! !!!!!:!!..! !||||||:!!||||||||| ThrSerGlyGlyLeuValValPhePheThrPheIleSerCysAspThrIleTyrMetAsn 42573 : ACATCTGGGGGCTTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTACATGAAT : 42514 205 : CysValHisHisSerCysGlyMetLeuLysIleLeuGly : 217 !|||!!.|||:!!||||||:!!||| !|||! !||| IleValGlnHisAlaCysGlyLeuLeuLeuIleSerGly 42513 : ATCGTGCAACACGCGTGCGGATTGTTGTTGATTTCTGGG : 42473 vulgar: NvOr203 124 217 . KQ414772.1 42751 42472 - 139 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42473 42751 139 - . gene_id 4 ; sequence NvOr203 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42473 42751 . - . KQ414772.1 exonerate:protein2genome:local exon 42473 42751 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42473 42751 139 - . alignment_id 4 ; Query NvOr203 ; Align 42752 125 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr203 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 130 -> 206 Target range: 45964 -> 45736 131 : AlaValTyrSerAlaLeuIleSerTyrMetValLeuProLeuThrProIleIleLeuAsp : 150 .!!:!!|||! !!.!:!! ! !!:! ..! !||||||! !|||.!!||||||||| ThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeuAsp 45964 : ACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTGGAC : 45907 151 : PheIleValProLeuAsnGluSerArgProLysGlnProLeuIleMetAlaGluPhePhe : 170 .!.||| !|||||||||||||||||||||::: ! ! ! !! ||| ! ! !!:! LeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyrCysTyr 45906 : CTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTACTGTTAC : 45847 171 : IleAspGlnAspLysTyrPheTyrProLeuMetIleHisAlaTyrLeuSerValLeuTyr : 190 .!!:!!! !||| ! |||!:!||| !:!!:!! :!!.!! ! !!!!:!! ! PheAsnProAspAspTyrTyrTyrTyrValValGlyTyrThrSerAlaCysIleGlyMet 45846 : TTCAATCCGGACGACTACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATAGGAATG : 45787 191 : GlyIleIleProLeuLeuGlyThrAspThrLeuTyrMetAsnCysVal : 206 !.! !:!! !|||:!!|||.!!|||! !:!! !!::!! !||| AlaGlyLeuValLeuValGlyAlaAspIleIleMetIleHisLeuVal 45786 : GCCGGACTCGTGCTTGTCGGCGCTGACATTATTATGATACATCTTGTA : 45737 vulgar: NvOr203 130 206 . KQ414772.1 45964 45736 - 105 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45737 45964 105 - . gene_id 5 ; sequence NvOr203 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45737 45964 . - . KQ414772.1 exonerate:protein2genome:local exon 45737 45964 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45737 45964 105 - . alignment_id 5 ; Query NvOr203 ; Align 45965 131 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr198 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 133 Query range: 141 -> 220 Target range: 42709 -> 42472 142 : TyrMetLeuLeuProMetLeuProAlaValLeuAspLeuIleAsnProLeuAsnGluSer : 161 !:!!!:! ! !||| :!!||| !|||! !|||:!!!!: !! !||||||||| PheIleSerAlaProTyrIleProHisValTyrAspValMetLeuSerLysAsnGluSer 42709 : TTTATCTCTGCGCCTTATATACCGCATGTATATGATGTTATGTTATCGAAAAACGAGTCA : 42652 162 : ArgProLysSerProLeuTyrMetValGluPheTyrIleAspGlnAspLysTyrPheTyr : 181 ||| ! !.!! !:!!||| !.! ! !:! !:!!|||||||||||||||!:!||| ArgLysLeuGlyPheIleTyrProAlaTyrTyrGlyValAspGlnAspLysTyrTyrTyr 42651 : CGAAAGTTGGGTTTCATTTACCCTGCCTATTATGGCGTTGATCAAGACAAGTATTATTAC : 42592 182 : SerValLeuThrHisAlaTyrIleThrSerLeuAlaGlyValLeuProLeuPheAlaThr : 201 ! !:!!:!!.!!||| ! ! !.!!|||!.!! ! !!!!! !!!!!.!!:!! ! TyrIleIleAlaHisMetThrSerGlyGlyLeuValValPhePheThrPheIleSerCys 42591 : TATATAATAGCTCACATGACATCTGGGGGCTTAGTGGTGTTTTTCACCTTTATCTCCTGC : 42532 202 : AspLeuLeuPheSerAsnCysAlaHisHisAlaCysGlyIleIleLysIleLeuGly : 220 ||| !:!!!:!! !||| !!.!!!.||||||||||||:!::!: !|||! !||| AspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuLeuIleSerGly 42531 : GACACGATTTACATGAATATCGTGCAACACGCGTGCGGATTGTTGTTGATTTCTGGG : 42473 vulgar: NvOr198 141 220 . KQ414772.1 42709 42472 - 133 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42473 42709 133 - . gene_id 1 ; sequence NvOr198 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42473 42709 . - . KQ414772.1 exonerate:protein2genome:local exon 42473 42709 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42473 42709 133 - . alignment_id 1 ; Query NvOr198 ; Align 42710 142 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr198 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 133 Query range: 139 -> 220 Target range: 33655 -> 33412 140 : LeuSerTyrMetLeuLeuProMetLeuProAlaValLeuAspLeuIleAsnProLeuAsn : 159 :!!! !!:!! ! ! !|||.!.:!!||| ! !!:!!|||:!! !! !||| IleMetPheSerSerAlaProPheIleProHisPheIleAspValAlaLeuSerLysAsn 33655 : ATCATGTTCAGCTCGGCGCCTTTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAAC : 33598 160 : GluSerArgProLysSerProLeuTyrMetValGluPheTyrIleAspGlnAspLysTyr : 179 ||||||||| ! !||| !:!!||| !.! ! !:! !|||||||||||||||||| GluSerArgLysLeuSerLeuMetTyrProAlaTyrTyrGlyIleAspGlnAspLysTyr 33597 : GAGTCACGAAAATTAAGTTTGATGTACCCTGCCTATTACGGCATTGACCAGGacaagtat : 33538 180 : PheTyrSerValLeuThrHisAlaTyrIleThrSerLeuAlaGlyValLeuProLeuPhe : 199 :::||| ::::::.!!||| ! ! !.!!.!! !|||! ! !!!!! !!!!.!. TyrTyrTyrLeuMetAlaHisMetMetSerAlaGlyAlaAlaValPhePheValPheMet 33537 : tattattatctaatgGCTCACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATG : 33478 200 : AlaThrAspLeuLeuPheSerAsnCysAlaHisHisAlaCysGlyIleIleLysIleLeu : 219 :!! !||| !:!!!:!! !||| !!.!!!.||||||||||||:!::!: |||! ! SerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuPheIleSer 33477 : TCCTGCGACACGATTTATATGAATATCGTTCAACACGCGTGCGGATTGTTGTTCATTTCC : 33418 220 : Gly : 220 ||| Gly 33417 : GGG : 33413 vulgar: NvOr198 139 220 . KQ414772.1 33655 33412 - 133 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33413 33655 133 - . gene_id 2 ; sequence NvOr198 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33413 33655 . - . KQ414772.1 exonerate:protein2genome:local exon 33413 33655 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 33413 33655 133 - . alignment_id 2 ; Query NvOr198 ; Align 33656 140 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr198 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 141 -> 220 Target range: 24413 -> 24176 142 : TyrMetLeuLeuProMetLeuProAlaValLeuAspLeuIleAsnProLeuAsnGluSer : 161 !:!! !:!! !!!!: !||| !|||||||||||||||:::||| !||||||||| PheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSer 24413 : TTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCG : 24356 162 : ArgProLysSerProLeuTyrMetValGluPheTyrIleAspGlnAspLysTyrPheTyr : 181 ||| ! !.!! !:!!||| !.!.!.!:! !:!!|||:!!!!::!!:!!!:!||| ArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyrTyr 24355 : CGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTACTAC : 24296 182 : SerValLeuThrHisAlaTyrIleThrSerLeuAlaGlyValLeuProLeuPheAlaThr : 201 ! !:!!:!! !||| ! ! !..!! ! !!.!! ! !!!!! !! !.!!:!! ! TyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIleSerCys 24295 : TATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGT : 24236 202 : AspLeuLeuPheSerAsnCysAlaHisHisAlaCysGlyIleIleLysIleLeuGly : 220 ||| !:!!!:!! !||| !!.!!!.||||||||||||:!!:!:!!.:!!! !||| AspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSerGly 24235 : GACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCTGGG : 24177 vulgar: NvOr198 141 220 . KQ414772.1 24413 24176 - 124 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24177 24413 124 - . gene_id 3 ; sequence NvOr198 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24177 24413 . - . KQ414772.1 exonerate:protein2genome:local exon 24177 24413 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 24177 24413 124 - . alignment_id 3 ; Query NvOr198 ; Align 24414 142 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr198 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 141 -> 220 Target range: 29592 -> 29355 142 : TyrMetLeuLeuProMetLeuProAlaValLeuAspLeuIleAsnProLeuAsnGluSer : 161 !:!! ! !:!! !!!!: !||| !|||||||||||||||:::||| !||||||||| PheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSer 29592 : TTCACCTCAGTGGCGATAACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCG : 29535 162 : ArgProLysSerProLeuTyrMetValGluPheTyrIleAspGlnAspLysTyrPheTyr : 181 ||| ! !.!! !:!!||| !.! ! !:! !:!!|||:!!!!::!!:!!!:!||| ArgGlyValGlyPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyr 29534 : CGCGGAGTGGGCTTCATTTATCCTGCATACTACGGTCTTGACGAAGAGGAGCATTACTAC : 29475 182 : SerValLeuThrHisAlaTyrIleThrSerLeuAlaGlyValLeuProLeuPheAlaThr : 201 ! !:!!:!! !||| ! ! !..!! ! !!.!! ! !!!!! !! !.!!:!! ! TyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIleSerCys 29474 : TATCTGATGGGTCACATGCTTTCCGTGATAACCGTCGTGTTTTTCGTCTACATCTCCTGT : 29415 202 : AspLeuLeuPheSerAsnCysAlaHisHisAlaCysGlyIleIleLysIleLeuGly : 220 ||| !:!!!:!! !||| !!.!!!.||||||||||||:!!:!:!!.:!!! !||| AspThrIleTyrMetAsnValValGlnHisAlaCysGlyLeuLeuAsnValSerGly 29414 : GACACGATCTATATGAATGTCGTGCAACACGCGTGTGGATTATTGAACGTCTCTGGG : 29356 vulgar: NvOr198 141 220 . KQ414772.1 29592 29355 - 121 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29356 29592 121 - . gene_id 4 ; sequence NvOr198 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29356 29592 . - . KQ414772.1 exonerate:protein2genome:local exon 29356 29592 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 29356 29592 121 - . alignment_id 4 ; Query NvOr198 ; Align 29593 142 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr198 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 141 -> 220 Target range: 38006 -> 37769 142 : TyrMetLeuLeuProMetLeuProAlaValLeuAspLeuIleAsnProLeuAsnGluSer : 161 !:!! ! !:!! !!!!: !||| !|||||||||||||||:::||| !||||||||| PheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSer 38006 : TTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCG : 37949 162 : ArgProLysSerProLeuTyrMetValGluPheTyrIleAspGlnAspLysTyrPheTyr : 181 ||| ! ..! !:!!||| !.! ! !:! !:!!|||:!!!!::!!:!!!:!||| ArgGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyr 37948 : CGTGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAGGAACATTATTAC : 37889 182 : SerValLeuThrHisAlaTyrIleThrSerLeuAlaGlyValLeuProLeuPheAlaThr : 201 ! !:!!:!! !||| ! ! !..!! ! !!.!! ! !!!!! !! !.!!:!! ! IleLeuMetGlyHisMetLeuCysValIleThrValValPhePheValTyrIleSerCys 37888 : ATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTGTACATCTCCTGT : 37829 202 : AspLeuLeuPheSerAsnCysAlaHisHisAlaCysGlyIleIleLysIleLeuGly : 220 ||| !:!!!:!! !!:! !!.!!!.||||||||||||:!!:!:!!.:!!! !||| AspThrIleTyrMetSerIleValGlnHisAlaCysGlyLeuLeuAsnValSerGly 37828 : GACACGATCTACATGAGCATCGTTCAACACGCGTGCGGATTACTGAACGTCTCTGGG : 37770 vulgar: NvOr198 141 220 . KQ414772.1 38006 37769 - 117 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37770 38006 117 - . gene_id 5 ; sequence NvOr198 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37770 38006 . - . KQ414772.1 exonerate:protein2genome:local exon 37770 38006 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 37770 38006 117 - . alignment_id 5 ; Query NvOr198 ; Align 38007 142 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr198 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 141 -> 218 Target range: 20556 -> 20325 142 : TyrMetLeuLeuProMetLeuProAlaValLeuAspLeuIleAsnProLeuAsnGluSer : 161 !:!:!:! !:!!|||.!. !||| !:!!||||||:!! ! |||||||||:!!!!! PheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsnLysThr 20556 : TTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAACAAAACG : 20499 162 : ArgProLysSerProLeuTyrMetValGluPheTyrIleAspGlnAspLysTyrPheTyr : 181 ||| !::: ! !:!!||| !.! ! !:!!::!!:|||! !!::!!|||!:! ArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMet 20498 : AGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATG : 20439 182 : SerValLeuThrHisAlaTyrIleThrSerLeuAlaGlyValLeuProLeuPheAlaThr : 201 ! !:!!:!!! !||| ! .!!..! !:!! !! ! !:!! !!!!! !||| ! IleMetIleIleHisIleMetPheValValIleMetValCysValIlePheCysAlaCys 20438 : ATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGTGCTTGC : 20379 202 : AspLeuLeuPheSerAsnCysAlaHisHisAlaCysGlyIleIleLysIle : 218 |||:!! !!:! ! !!..!!.!!!.||||||||||||:!!:!: :!! AspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaVal 20378 : GACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: NvOr198 141 218 . KQ414772.1 20556 20325 - 112 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20556 112 - . gene_id 6 ; sequence NvOr198 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20556 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20556 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20326 20556 112 - . alignment_id 6 ; Query NvOr198 ; Align 20557 142 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr198 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 141 -> 204 Target range: 45940 -> 45751 142 : TyrMetLeuLeuProMetLeuProAlaValLeuAspLeuIleAsnProLeuAsnGluSer : 161 !:! ! !|||:!::!!||| !:!!||||||||||||:::||||||||||||||| PheSerThrAlaProLeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSer 45940 : TTTTCTACCGCGCCCCTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCT : 45883 162 : ArgProLysSerProLeuTyrMetValGluPheTyrIleAspGlnAspLysTyrPheTyr : 181 ||||||:::! ! ! !|||! !.! ! ! !|||.!!:!!! !||| ! |||!:!||| ArgProArgLeuTyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyr 45882 : CGTCCACGTTTGTACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTAT : 45823 182 : SerValLeuThrHisAlaTyrIleThrSerLeuAlaGlyValLeuProLeuPheAlaThr : 201 ! !|||:!! !:!!.!! ! !! ! ! !!.!! !||| !||| !!!.!.!! TyrValValGlyTyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAla 45822 : TACGTCGTGGGGTACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCT : 45763 202 : AspLeuLeu : 204 |||:!!:!! AspIleIle 45762 : GACATTATT : 45752 vulgar: NvOr198 141 204 . KQ414772.1 45940 45751 - 107 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45752 45940 107 - . gene_id 7 ; sequence NvOr198 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45752 45940 . - . KQ414772.1 exonerate:protein2genome:local exon 45752 45940 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45752 45940 107 - . alignment_id 7 ; Query NvOr198 ; Align 45941 142 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr205PSE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 149 -> 224 Target range: 42697 -> 42472 150 : ProLeuAlaProLeuLeuLeuAspTyrIleLysProLeuAsnGluSerArgSerLeuGln : 169 |||! ! !|||! !:!!! !||| !!!: ! !! !||||||||||||!.!||| ProTyrIleProHisValTyrAspValMetLeuSerLysAsnGluSerArgLysLeuGly 42697 : CCTTATATACCGCATGTATATGATGTTATGTTATCGAAAAACGAGTCACGAAAGTTGGGT : 42640 170 : ProLeuPheMetValGluPheTyrIleAspProAspLysTyrPheTyrThrIleLeuAla : 189 !:!!!:! !.! ! !:! !:!!|||! !|||||||||!:!||| !|||:!!||| PheIleTyrProAlaTyrTyrGlyValAspGlnAspLysTyrTyrTyrTyrIleIleAla 42639 : TTCATTTACCCTGCCTATTATGGCGTTGATCAAGACAAGTATTATTACTATATAATAGCT : 42580 190 : GlnAsnTyrValCysAlaLeuValSerProIleSerIleIleAlaMetAspLeuIlePhe : 209 !!.! ! ! !.!|||||| ! !.!!!!!.!!|||:!! ||| !|||!:! HisMetThrSerGlyGlyLeuValValPhePheThrPheIleSerCysAspThrIleTyr 42579 : CACATGACATCTGGGGGCTTAGTGGTGTTTTTCACCTTTATCTCCTGCGACACGATTTAC : 42520 210 : MetAsnCysAlaAsnHisIleCysGlyMetIleTrpIleLeuGly : 224 |||||| !!.!.!.||| ||||||:!!:!:! !|||! !||| MetAsnIleValGlnHisAlaCysGlyLeuLeuLeuIleSerGly 42519 : ATGAATATCGTGCAACACGCGTGCGGATTGTTGTTGATTTCTGGG : 42473 vulgar: NvOr205PSE 149 224 . KQ414772.1 42697 42472 - 125 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42473 42697 125 - . gene_id 1 ; sequence NvOr205PSE ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42473 42697 . - . KQ414772.1 exonerate:protein2genome:local exon 42473 42697 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42473 42697 125 - . alignment_id 1 ; Query NvOr205PSE ; Align 42698 150 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr205PSE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 149 -> 224 Target range: 33637 -> 33412 150 : ProLeuAlaProLeuLeuLeuAspTyrIleLysProLeuAsnGluSerArgSerLeuGln : 169 |||!!! !|||! !!!!:!!||| ! ! !! !||||||||||||!.!|||... ProPheIleProHisPheIleAspValAlaLeuSerLysAsnGluSerArgLysLeuSer 33637 : CCTTTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAACGAGTCACGAAAATTAAGT : 33580 170 : ProLeuPheMetValGluPheTyrIleAspProAspLysTyrPheTyrThrIleLeuAla : 189 !:!!!:! !.! ! !:! !||||||! !|||||||||:::||| ::::::||| LeuMetTyrProAlaTyrTyrGlyIleAspGlnAspLysTyrTyrTyrTyrLeuMetAla 33579 : TTGATGTACCCTGCCTATTACGGCATTGACCAGGacaagtattattattatctaatgGCT : 33520 190 : GlnAsnTyrValCysAlaLeuValSerProIleSerIleIleAlaMetAspLeuIlePhe : 209 !!.! !...!.! !!.! ! !.!! !.!!!!::!! ||| !|||!:! HisMetMetSerAlaGlyAlaAlaValPhePheValPheMetSerCysAspThrIleTyr 33519 : CACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATGTCCTGCGACACGATTTAT : 33460 210 : MetAsnCysAlaAsnHisIleCysGlyMetIleTrpIleLeuGly : 224 |||||| !!.!.!.||| ||||||:!!:!:!::|||! !||| MetAsnIleValGlnHisAlaCysGlyLeuLeuPheIleSerGly 33459 : ATGAATATCGTTCAACACGCGTGCGGATTGTTGTTCATTTCCGGG : 33413 vulgar: NvOr205PSE 149 224 . KQ414772.1 33637 33412 - 120 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33413 33637 120 - . gene_id 2 ; sequence NvOr205PSE ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33413 33637 . - . KQ414772.1 exonerate:protein2genome:local exon 33413 33637 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 33413 33637 120 - . alignment_id 2 ; Query NvOr205PSE ; Align 33638 150 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr205PSE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 138 -> 211 Target range: 45961 -> 45742 139 : IleTyrAlaAlaValLeuGlnTrpMetLeuLeuProLeuAlaProLeuLeuLeuAspTyr : 158 |||||| !!.!|||! ! !!:: ! !|||||| !|||!!!:!!|||||| IleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeuAspLeu 45961 : ATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTGGACCTA : 45904 159 : IleLysProLeuAsnGluSerArgSerLeuGlnProLeuPheMetValGluPheTyrIle : 178 |||..!|||||||||||||||||| !!! ! ! ! !!:!! !.! ! ! !|||.!! IleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyrCysTyrPhe 45903 : ATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTACTGTTACTTC : 45844 179 : AspProAspLysTyrPheTyrThrIleLeuAlaGlnAsnTyrValCysAlaLeuValSer : 198 :!!|||||| ! |||!:!||| !:!!:!!!.! ! !.! !!.!||| ! !:!!:!! AsnProAspAspTyrTyrTyrTyrValValGlyTyrThrSerAlaCysIleGlyMetAla 45843 : AATCCGGACGACTACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATAGGAATGGCC : 45784 199 : ProIleSerIleIleAlaMetAspLeuIlePheMetAsn : 211 !:!! !:!!:!!!.! |||:!!|||.!.!!::!! GlyLeuValLeuValGlyAlaAspIleIleMetIleHis 45783 : GGACTCGTGCTTGTCGGCGCTGACATTATTATGATACAT : 45743 vulgar: NvOr205PSE 138 211 . KQ414772.1 45961 45742 - 118 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45743 45961 118 - . gene_id 3 ; sequence NvOr205PSE ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45743 45961 . - . KQ414772.1 exonerate:protein2genome:local exon 45743 45961 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45743 45961 118 - . alignment_id 3 ; Query NvOr205PSE ; Align 45962 139 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr205PSE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 145 -> 220 Target range: 20556 -> 20331 146 : TrpMetLeuLeuProLeuAlaProLeuLeuLeuAspTyrIleLysProLeuAsnGluSer : 165 !:::!:! !:!!|||!!!||||||:!!:!!|||||| ! ! !|||||||||:!!!!! PheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsnLysThr 20556 : TTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAACAAAACG : 20499 166 : ArgSerLeuGlnProLeuPheMetValGluPheTyrIleAspProAspLysTyrPheTyr : 185 |||!.!! ! ! !:!!!:! !.! ! !:!!::!!:||||||!!::!!|||!:! ArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMet 20498 : AGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATG : 20439 186 : ThrIleLeuAlaGlnAsnTyrValCysAlaLeuValSerProIleSerIleIleAlaMet : 205 ! !!!::!! !!!.! !! !.!:!!:!! ! !:!!! !.!! !||| IleMetIleIleHisIleMetPheValValIleMetValCysValIlePheCysAlaCys 20438 : ATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGTGCTTGC : 20379 206 : AspLeuIlePheMetAsnCysAlaAsnHisIleCysGlyMetIle : 220 |||:!!! !!:!:!! !!..!!.!.!.||| !||||||:!::!: AspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeu 20378 : GACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTG : 20332 vulgar: NvOr205PSE 145 220 . KQ414772.1 20556 20331 - 108 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20332 20556 108 - . gene_id 4 ; sequence NvOr205PSE ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20332 20556 . - . KQ414772.1 exonerate:protein2genome:local exon 20332 20556 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20332 20556 108 - . alignment_id 4 ; Query NvOr205PSE ; Align 20557 146 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr202 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 89 -> 136 Target range: 29930 -> 29789 90 : LysIleLysGluLeuIleGluLysIleGlnLysAsnTrpIleThrIleSerLysLysSer : 109 :!!:!!||||||:!!|||||| :!! !!.:!!|||:!!|||! ! !! |||||| GlnLeuLysGluMetIleGluCysLeuPheAsnAspTrpValThrThrArgProLysSer 29930 : CAGCTAAAGGAGATGATAGAGTGCTTATTCAACGATTGGGTAACGACACGGCcgaaaagt : 29873 110 : GluValGluIleLeuThrArgTyrSerAsnMetGlyIleArgIleGlyTrpLeuTyrIle : 129 |||:::||||||::: !!:!|||:!!!..! |||:!: !.!!..! ! ||||||:!! GluIleGluIleMetAspLysTyrAlaArgArgGlyLeuPhePheAsnArgLeuTyrVal 29872 : gaaattgaaattatggACAAGTATGCGAGAAGAGGCCTGTTTTTCAATCGTTTGTACGTC : 29813 130 : GlyAlaLeuTyrPheThrLeu : 136 ||| !:!!!! |||.!!||| GlyArgVal***PheAlaLeu 29812 : GGTAGGGTATAATTTGCGTTG : 29790 vulgar: NvOr202 89 136 . KQ414772.1 29930 29789 - 101 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29790 29930 101 - . gene_id 1 ; sequence NvOr202 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29790 29930 . - . KQ414772.1 exonerate:protein2genome:local exon 29790 29930 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 29790 29930 101 - . alignment_id 1 ; Query NvOr202 ; Align 29931 90 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 163 Query range: 136 -> 225 Target range: 14139 -> 13872 137 : IleIleCysTyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgProLeu : 156 :!!||| !:!:!! ! ||| ! |||||| !:!!||||||:!!:!!! !||| ! ValIleLeuPheValThrThrProValThrProHisIleLeuAspIleLeuLeuProLys 14139 : GTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAG : 14082 157 : AsnGluThrArgProArgGlnLeuIleTyrMetValGluPhePheIleAspGluAspLys : 176 ||||||:!!||| ! ! !! !|||||| !!.! ! !:!|||! !|||||| !!||| AsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLys 14081 : AACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAG : 14022 177 : TyrPheTyrGluIleGlnIleHisSerTyrAlaThrThrLeuIleGlyPheIleProLeu : 196 ||| ! ! ||| ! |||! ! :!!..!! !|||:!:! !||| ! !! ! TyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyr 14021 : TACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTAC : 13962 197 : IleSerIleAspThrPheTyrAlaAlaSerValGlnHisAlaCysGlyMetPheAlaIle : 216 :!!:!! !|||||| !||| ! ! !|||||||||!.!||||||:!!!!.|||:!: ValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaVal 13961 : GTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTG : 13902 217 : LeuGlyHisArgLeuArgArgIleAsn : 225 ! !||| ::::::||| ||| SerGly***LysIleArgSerLysAsn 13901 : TCCGGgtaaaaaattcgatcgaaaaat : 13873 vulgar: NvOr204 136 225 . KQ414772.1 14139 13872 - 163 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13873 14139 163 - . gene_id 1 ; sequence NvOr204 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13873 14139 . - . KQ414772.1 exonerate:protein2genome:local exon 13873 14139 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13873 14139 163 - . alignment_id 1 ; Query NvOr204 ; Align 14140 137 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 154 Query range: 139 -> 218 Target range: 42709 -> 42472 140 : TyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgProLeuAsnGluThr : 159 !:!:!!! ! |||!:!! !||| !|||! !|||:!!!!: ! !! !||||||:!! PheIleSerAlaProTyrIleProHisValTyrAspValMetLeuSerLysAsnGluSer 42709 : TTTATCTCTGCGCCTTATATACCGCATGTATATGATGTTATGTTATCGAAAAACGAGTCA : 42652 160 : ArgProArgGlnLeuIleTyrMetValGluPhePheIleAspGluAspLysTyrPheTyr : 179 ||| ! ! !!!|||||| !.! ! !:! !:!!|||:!!|||||||||!:!||| ArgLysLeuGlyPheIleTyrProAlaTyrTyrGlyValAspGlnAspLysTyrTyrTyr 42651 : CGAAAGTTGGGTTTCATTTACCCTGCCTATTATGGCGTTGATCAAGACAAGTATTATTAC : 42592 180 : GluIleGlnIleHisSerTyrAlaThrThrLeuIleGlyPheIleProLeuIleSerIle : 199 ! ||| ! !|||! ! :!! ! !|||:!:! !|||.!! !!!!!|||||| ! TyrIleIleAlaHisMetThrSerGlyGlyLeuValValPhePheThrPheIleSerCys 42591 : TATATAATAGCTCACATGACATCTGGGGGCTTAGTGGTGTTTTTCACCTTTATCTCCTGC : 42532 200 : AspThrPheTyrAlaAlaSerValGlnHisAlaCysGlyMetPheAlaIleLeuGly : 218 ||||||.!!||| ! !! !||||||||||||||||||:!!!!. !|||! !||| AspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuLeuIleSerGly 42531 : GACACGATTTACATGAATATCGTGCAACACGCGTGCGGATTGTTGTTGATTTCTGGG : 42473 vulgar: NvOr204 139 218 . KQ414772.1 42709 42472 - 154 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42473 42709 154 - . gene_id 2 ; sequence NvOr204 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42473 42709 . - . KQ414772.1 exonerate:protein2genome:local exon 42473 42709 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42473 42709 154 - . alignment_id 2 ; Query NvOr204 ; Align 42710 140 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 150 Query range: 137 -> 218 Target range: 38012 -> 37769 138 : IleCysTyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgProLeuAsn : 157 :!! !:! !! ! ! !!.!!|||||| !||||||||||||||| !||| !||| ValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 38012 : GTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAAC : 37955 158 : GluThrArgProArgGlnLeuIleTyrMetValGluPhePheIleAspGluAspLysTyr : 177 |||:!!||| ! !.!.!!!|||||| !.! ! !:! !:!!||||||!!::!!:!! GluSerArgGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHis 37954 : GAATCGCGTGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAGGAACAT : 37895 178 : PheTyrGluIleGlnIleHisSerTyrAlaThrThrLeuIleGlyPheIleProLeuIle : 197 !:!||| :!:..! !|||! ! !..!..!! ! !:!!! !|||.!! !! !||| TyrTyrIleLeuMetGlyHisMetLeuCysValIleThrValValPhePheValTyrIle 37894 : TATTACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTGTACATC : 37835 198 : SerIleAspThrPheTyrAlaAlaSerValGlnHisAlaCysGlyMetPheAlaIleLeu : 217 ||| !||||||.!!||| !::!! !||||||||||||||||||:!:.!. !:!!! ! SerCysAspThrIleTyrMetSerIleValGlnHisAlaCysGlyLeuLeuAsnValSer 37834 : TCCTGTGACACGATCTACATGAGCATCGTTCAACACGCGTGCGGATTACTGAACGTCTCT : 37775 218 : Gly : 218 ||| Gly 37774 : GGG : 37770 vulgar: NvOr204 137 218 . KQ414772.1 38012 37769 - 150 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37770 38012 150 - . gene_id 3 ; sequence NvOr204 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37770 38012 . - . KQ414772.1 exonerate:protein2genome:local exon 37770 38012 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 37770 38012 150 - . alignment_id 3 ; Query NvOr204 ; Align 38013 138 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 150 Query range: 137 -> 218 Target range: 24419 -> 24176 138 : IleCysTyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgProLeuAsn : 157 :!! !!:! ! ! ! !!.!!|||||| !||||||||||||||| !||| !||| ValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 24419 : GTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAAC : 24362 158 : GluThrArgProArgGlnLeuIleTyrMetValGluPhePheIleAspGluAspLysTyr : 177 |||:!!||| ! ! !!!|||||| !.!.!.!:! !:!!||||||!!::!!:!! GluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHis 24361 : GAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCAT : 24302 178 : PheTyrGluIleGlnIleHisSerTyrAlaThrThrLeuIleGlyPheIleProLeuIle : 197 !:!||| ! :!:..! !|||! ! !:!!..!! ! !:!!! !|||.!! !! !||| TyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIle 24301 : TACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATC : 24242 198 : SerIleAspThrPheTyrAlaAlaSerValGlnHisAlaCysGlyMetPheAlaIleLeu : 217 ||| !||||||.!!||| ! !! !||||||||||||||||||:!:!!. !:!!! ! SerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSer 24241 : TCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCT : 24182 218 : Gly : 218 ||| Gly 24181 : GGG : 24177 vulgar: NvOr204 137 218 . KQ414772.1 24419 24176 - 150 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24177 24419 150 - . gene_id 4 ; sequence NvOr204 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24177 24419 . - . KQ414772.1 exonerate:protein2genome:local exon 24177 24419 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 24177 24419 150 - . alignment_id 4 ; Query NvOr204 ; Align 24420 138 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 148 Query range: 139 -> 216 Target range: 20556 -> 20325 140 : TyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgProLeuAsnGluThr : 159 !:!|||! ! ! ||||||.!!|||.!!:!!||||||:!! ! !|||||||||:!!||| PheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsnLysThr 20556 : TTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAACAAAACG : 20499 160 : ArgProArgGlnLeuIleTyrMetValGluPhePheIleAspGluAspLysTyrPheTyr : 179 ||| !||| !!!!:!!||| !.! ! !:!!::!!:||| !!::!!|||!:! ArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMet 20498 : AGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATG : 20439 180 : GluIleGlnIleHisSerTyrAlaThrThrLeuIleGlyPheIleProLeuIleSerIle : 199 !!!: !||||||! ! !..!..!:!!!!:! !! !:!! !!!! !:!! ! IleMetIleIleHisIleMetPheValValIleMetValCysValIlePheCysAlaCys 20438 : ATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGTGCTTGC : 20379 200 : AspThrPheTyrAlaAlaSerValGlnHisAlaCysGlyMetPheAlaIle : 216 |||! ! !|||!.! !:!!||||||||||||||||||:!:!!.|||:!! AspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaVal 20378 : GACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: NvOr204 139 216 . KQ414772.1 20556 20325 - 148 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20556 148 - . gene_id 5 ; sequence NvOr204 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20556 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20556 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20326 20556 148 - . alignment_id 5 ; Query NvOr204 ; Align 20557 140 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 147 Query range: 137 -> 218 Target range: 29598 -> 29355 138 : IleCysTyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgProLeuAsn : 157 :!! !:! !! ! ! !!.!.|||||| !||||||||||||||| !||| !||| ValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 29598 : GTTATATTCACCTCAGTGGCGATAACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAAC : 29541 158 : GluThrArgProArgGlnLeuIleTyrMetValGluPhePheIleAspGluAspLysTyr : 177 |||:!!||| ! ! !!!|||||| !.! ! !:! !:!!||||||!!::!!:!! GluSerArgGlyValGlyPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHis 29540 : GAATCGCGCGGAGTGGGCTTCATTTATCCTGCATACTACGGTCTTGACGAAGAGGAGCAT : 29481 178 : PheTyrGluIleGlnIleHisSerTyrAlaThrThrLeuIleGlyPheIleProLeuIle : 197 !:!||| ! :!:..! !|||! ! !:!!..!! ! !:!!! !|||.!! !! !||| TyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIle 29480 : TACTACTATCTGATGGGTCACATGCTTTCCGTGATAACCGTCGTGTTTTTCGTCTACATC : 29421 198 : SerIleAspThrPheTyrAlaAlaSerValGlnHisAlaCysGlyMetPheAlaIleLeu : 217 ||| !||||||.!!||| ! ! !||||||||||||||||||:!:!!. !:!!! ! SerCysAspThrIleTyrMetAsnValValGlnHisAlaCysGlyLeuLeuAsnValSer 29420 : TCCTGTGACACGATCTATATGAATGTCGTGCAACACGCGTGTGGATTATTGAACGTCTCT : 29361 218 : Gly : 218 ||| Gly 29360 : GGG : 29356 vulgar: NvOr204 137 218 . KQ414772.1 29598 29355 - 147 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29356 29598 147 - . gene_id 6 ; sequence NvOr204 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29356 29598 . - . KQ414772.1 exonerate:protein2genome:local exon 29356 29598 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 29356 29598 147 - . alignment_id 6 ; Query NvOr204 ; Align 29599 138 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 146 Query range: 137 -> 218 Target range: 33655 -> 33412 138 : IleCysTyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgProLeuAsn : 157 ||| !:! !! ! ||||||! !||| ! !!:!!|||:!! ! !! !||| IleMetPheSerSerAlaProPheIleProHisPheIleAspValAlaLeuSerLysAsn 33655 : ATCATGTTCAGCTCGGCGCCTTTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAAC : 33598 158 : GluThrArgProArgGlnLeuIleTyrMetValGluPhePheIleAspGluAspLysTyr : 177 |||:!!||| ! !...|||!!:||| !.! ! !:! !||||||:!!||||||||| GluSerArgLysLeuSerLeuMetTyrProAlaTyrTyrGlyIleAspGlnAspLysTyr 33597 : GAGTCACGAAAATTAAGTTTGATGTACCCTGCCTATTACGGCATTGACCAGGacaagtat : 33538 178 : PheTyrGluIleGlnIleHisSerTyrAlaThrThrLeuIleGlyPheIleProLeuIle : 197 :::||| :::... !|||! ! ::!.!! ! ! ! !|||.!! !!!!!!: TyrTyrTyrLeuMetAlaHisMetMetSerAlaGlyAlaAlaValPhePheValPheMet 33537 : tattattatctaatgGCTCACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATG : 33478 198 : SerIleAspThrPheTyrAlaAlaSerValGlnHisAlaCysGlyMetPheAlaIleLeu : 217 ||| !||||||.!!||| ! !! !||||||||||||||||||:!!!!. !|||! ! SerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuPheIleSer 33477 : TCCTGCGACACGATTTATATGAATATCGTTCAACACGCGTGCGGATTGTTGTTCATTTCC : 33418 218 : Gly : 218 ||| Gly 33417 : GGG : 33413 vulgar: NvOr204 137 218 . KQ414772.1 33655 33412 - 146 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33413 33655 146 - . gene_id 7 ; sequence NvOr204 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33413 33655 . - . KQ414772.1 exonerate:protein2genome:local exon 33413 33655 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 33413 33655 146 - . alignment_id 7 ; Query NvOr204 ; Align 33656 138 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 139 -> 218 Target range: 18039 -> 17802 140 : TyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgProLeuAsnGluThr : 159 !:!:!!! ! ! |||!:::!! !! :!!:!!:!!! ! !!:! !!! !||| !||| PheIleGlnValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIleThr 18039 : TTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACG : 17982 160 : ArgProArgGlnLeuIleTyrMetValGluPhePheIleAspGluAspLysTyrPheTyr : 179 ! ! ! !|||!!!:!! ! ! ! !:!|||:!!||||||! :!!|||!:!||| ProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyrTyr 17981 : CCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTAT : 17922 180 : GluIleGlnIleHisSerTyrAlaThrThrLeuIleGlyPheIleProLeuIleSerIle : 199 ! ||| !:!!|||.!! ..!|||! !||||||! ! ! :!: !! ! !:!! ! TyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCys 17921 : TACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 17862 200 : AspThrPheTyrAlaAlaSerValGlnHisAlaCysGlyMetPheAlaIleLeuGly : 218 |||||| !||| !!.! !|||||||||.!!||||||:!!||||||:!: !||| AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly 17861 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 17803 vulgar: NvOr204 139 218 . KQ414772.1 18039 17802 - 126 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17803 18039 126 - . gene_id 8 ; sequence NvOr204 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17803 18039 . - . KQ414772.1 exonerate:protein2genome:local exon 17803 18039 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17803 18039 126 - . alignment_id 8 ; Query NvOr204 ; Align 18040 140 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 143 -> 200 Target range: 45928 -> 45757 144 : ProPheThrProPheValLeuAspLeuIleArgProLeuAsnGluThrArgProArgGln : 163 |||.!!! !||||||:!!|||||||||||| !||||||||||||:!!||||||||| ! ProLeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArgLeu 45928 : CCCCTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTG : 45871 164 : LeuIleTyrMetValGluPhePheIleAspGluAspLysTyrPheTyrGluIleGlnIle : 183 ! ! !|||! !.! ! ! !!:!.!!:!! !||| ! |||!:!||| ! :!! ! TyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValValGly 45870 : TACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTGGGG : 45811 184 : HisSerTyrAlaThrThrLeuIleGlyPheIleProLeuIleSerIleAsp : 200 :!!!!! !||| !! ! !!!:!.! :!! !|||:!!.!! !||| TyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAlaAsp 45810 : TACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGAC : 45758 vulgar: NvOr204 143 200 . KQ414772.1 45928 45757 - 106 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45758 45928 106 - . gene_id 9 ; sequence NvOr204 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45758 45928 . - . KQ414772.1 exonerate:protein2genome:local exon 45758 45928 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45758 45928 106 - . alignment_id 9 ; Query NvOr204 ; Align 45929 144 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr201 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 129 Query range: 116 -> 217 Target range: 33715 -> 33412 117 : TyrSerAspThrGlyLysAlaPheAsnThrValTyrLeuSerLeuValThrValIleLeu : 136 |||! ! !||| :::|||:::::: ::: :!! !! !..! !! !! ! TyrTyrCysThrValTyrSerPheSerSerAsnPheThrAlaAsnGlyValPheCysTyr 33715 : TATTATTGTActgtttattcattttcttcaaatttcacagCAAACGGAGTGTTTTGCTAC : 33658 137 : LeuSerTyrMetLeuIleProMetLeuProAlaAlaLeuAspLeuValAsnProLeuAsn : 156 :!!! !!:!! ! ! |||.!.:!!||| ! !:!!|||:!!!.! !! !||| IleMetPheSerSerAlaProPheIleProHisPheIleAspValAlaLeuSerLysAsn 33657 : ATCATGTTCAGCTCGGCGCCTTTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAAC : 33598 157 : GluSerArgProThrSerProLeuTyrLeuValGluLeuTyrIleAspGlnAspLysTyr : 176 ||||||||| ! !||| !:!!|||! !!.! ! ! ! !|||||||||||||||||| GluSerArgLysLeuSerLeuMetTyrProAlaTyrTyrGlyIleAspGlnAspLysTyr 33597 : GAGTCACGAAAATTAAGTTTGATGTACCCTGCCTATTACGGCATTGACCAGGacaagtat : 33538 177 : PheTyrSerValLeuThrHisAlaTyrIleThrSerLeuAlaGlyIleLeuProLeuPhe : 196 :::||| ::::::.!!||| ! ! !.!!.!! !|||! !.!!!!! !!!!.!. TyrTyrTyrLeuMetAlaHisMetMetSerAlaGlyAlaAlaValPhePheValPheMet 33537 : tattattatctaatgGCTCACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATG : 33478 197 : AlaIleAspSerLeuPheSerSerCysAlaHisHisAlaCysGlyMetIleGluIleLeu : 216 :!! !|||!!!:!!!:!! !!:! !!.!!!.||||||||||||:!!:!: |||! ! SerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuPheIleSer 33477 : TCCTGCGACACGATTTATATGAATATCGTTCAACACGCGTGCGGATTGTTGTTCATTTCC : 33418 217 : Gly : 217 ||| Gly 33417 : GGG : 33413 vulgar: NvOr201 116 217 . KQ414772.1 33715 33412 - 129 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33413 33715 129 - . gene_id 1 ; sequence NvOr201 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33413 33715 . - . KQ414772.1 exonerate:protein2genome:local exon 33413 33715 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 33413 33715 129 - . alignment_id 1 ; Query NvOr201 ; Align 33716 117 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr201 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 138 -> 217 Target range: 42709 -> 42472 139 : TyrMetLeuIleProMetLeuProAlaAlaLeuAspLeuValAsnProLeuAsnGluSer : 158 !:!!!:! ! ||| :!!||| !!.!! !|||:!!:!! !! !||||||||| PheIleSerAlaProTyrIleProHisValTyrAspValMetLeuSerLysAsnGluSer 42709 : TTTATCTCTGCGCCTTATATACCGCATGTATATGATGTTATGTTATCGAAAAACGAGTCA : 42652 159 : ArgProThrSerProLeuTyrLeuValGluLeuTyrIleAspGlnAspLysTyrPheTyr : 178 ||| ! !.!! !:!!|||! !!.! ! ! ! !:!!|||||||||||||||!:!||| ArgLysLeuGlyPheIleTyrProAlaTyrTyrGlyValAspGlnAspLysTyrTyrTyr 42651 : CGAAAGTTGGGTTTCATTTACCCTGCCTATTATGGCGTTGATCAAGACAAGTATTATTAC : 42592 179 : SerValLeuThrHisAlaTyrIleThrSerLeuAlaGlyIleLeuProLeuPheAlaIle : 198 ! !:!!:!!.!!||| ! ! !.!!|||!.!! !.!!!!! !!!!!.!!:!! ! TyrIleIleAlaHisMetThrSerGlyGlyLeuValValPhePheThrPheIleSerCys 42591 : TATATAATAGCTCACATGACATCTGGGGGCTTAGTGGTGTTTTTCACCTTTATCTCCTGC : 42532 199 : AspSerLeuPheSerSerCysAlaHisHisAlaCysGlyMetIleGluIleLeuGly : 217 |||!!!:!!!:!! !!:! !!.!!!.||||||||||||:!!:!: !|||! !||| AspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuLeuIleSerGly 42531 : GACACGATTTACATGAATATCGTGCAACACGCGTGCGGATTGTTGTTGATTTCTGGG : 42473 vulgar: NvOr201 138 217 . KQ414772.1 42709 42472 - 122 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42473 42709 122 - . gene_id 2 ; sequence NvOr201 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42473 42709 . - . KQ414772.1 exonerate:protein2genome:local exon 42473 42709 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42473 42709 122 - . alignment_id 2 ; Query NvOr201 ; Align 42710 139 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr199PSE Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 84 -> 168 Target range: 45994 -> 45742 85 : IleGlnIleLeuAlaLysThrValLysPheGlyMetLeuIleAsnValGlyPheIleUnk : 104 |||...:!!|||:!!! ! !!.!..! ! !!!:! !|||...|||..! ! .!!... IleSerValLeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSer 45994 : ATTTCCGTTTTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCT : 45937 105 : IleIleProLeuLeuProLeuValLeuAspIleValZedSerLeuAsnGluSerArgPro : 124 ! ! ||||||:!!|||!!!:!!||||||:!!:!!... !!|||||||||||||||||| ThrAlaProLeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgPro 45936 : ACCGCGCCCCTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCA : 45877 125 : LeuLysSerProPheThrCysGluPhePheValAspProAspLysTyrTyrPheThrIle : 144 ! ! !! ! !!!:!! !..! ! ! !!:! !!:!!|||||| ! ||||||!:! !:!! ArgLeuTyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrVal 45876 : CGTTTGTACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTC : 45817 145 : LeuAlaGlnAsnTyrIleSerAlaLeuAlaSerProLeuProLeuValGlyMetAspLeu : 164 :!!!.! ! !.! ! !!! ! ! !:!! !||| !||||||||| |||:!! ValGlyTyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAlaAspIle 45816 : GTGGGGTACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATT : 45757 165 : PhePheIleAsn : 168 .!!.!.|||:!! IleMetIleHis 45756 : ATTATGATACAT : 45743 vulgar: NvOr199PSE 84 168 . KQ414772.1 45994 45742 - 118 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45743 45994 118 - . gene_id 1 ; sequence NvOr199PSE ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45743 45994 . - . KQ414772.1 exonerate:protein2genome:local exon 45743 45994 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45743 45994 118 - . alignment_id 1 ; Query NvOr199PSE ; Align 45995 85 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr201 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 138 Query range: 131 -> 217 Target range: 26246 -> 25988 132 : ValThrValIleLeuLeuSerTyrMetLeuIleProMetLeuProAlaAlaLeuAspLeu : 151 :!!:!!:!! ! ! ! !!:!|||! !:!:|||.!.:!! !! !! !||||||:!! IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIle 26246 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATC : 26189 152 : ValAsnProLeuAsnGluSerArgProThrSerProLeuTyrLeuValGluLeuTyrIle : 171 :!!! ||||||||||||!!!||| !! !! ! !:!!|||! !!.! ! ! !!:!:!! LeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal 26188 : CTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC : 26129 172 : AspGlnAspLysTyrPheTyrSerValLeuThrHisAlaTyrIleThrSerLeuAlaGly : 191 |||:!!||||||||| !|||! !:!!:!! !||| !|||:!!..! !:!! ! ! AspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeu 26128 : GACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTT : 26069 192 : IleLeuProLeuPheAlaIleAspSerLeuPheSerSerCysAlaHisHisAlaCysGly : 211 |||! ! !!!!! !||| !|||:!! !!:! !! !..!!.!!!.|||||||||||| IleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGly 26068 : ATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGA : 26009 212 : MetIleGluIleLeuGly : 217 :!!:!:! ||| !||| LeuLeuAlaIleAlaGly 26008 : TTGTTGGCCATTGCAGGG : 25989 vulgar: NvOr201 131 217 . LHQN01017803.1 26246 25988 - 138 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26246 138 - . gene_id 1 ; sequence NvOr201 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26246 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26246 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26246 138 - . alignment_id 1 ; Query NvOr201 ; Align 26247 132 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr198 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 161 Query range: 134 -> 237 Target range: 26246 -> 25937 135 : ValAlaValValLeuLeuSerTyrMetLeuLeuProMetLeuProAlaValLeuAspLeu : 154 :!!:!!:!! ! ! ! !!:!|||! !||||||.!.:!! !! !!:!!||||||:!! IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIle 26246 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATC : 26189 155 : IleAsnProLeuAsnGluSerArgProLysSerProLeuTyrMetValGluPheTyrIle : 174 :!!! ||||||||||||!!!||| !!::!! ! !:!!||| !.! ! !:!!:!:!! LeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal 26188 : CTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC : 26129 175 : AspGlnAspLysTyrPheTyrSerValLeuThrHisAlaTyrIleThrSerLeuAlaGly : 194 |||:!!||||||||| !|||! !:!!:!! !||| !|||:!!..! !:!! ! ! AspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeu 26128 : GACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTT : 26069 195 : ValLeuProLeuPheAlaThrAspLeuLeuPheSerAsnCysAlaHisHisAlaCysGly : 214 :!!! ! !!!!! !||| !||| ! !!:! ! !!..!!.!!!.|||||||||||| IleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGly 26068 : ATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGA : 26009 215 : IleIleLysIleLeuGlyArgArgIleGluAsnIleLeuSerGluGluProAlaLeuLys : 234 :!::!: ||| !||| ! !:!!:!!... !|||! !|||.!. ! !||| ! LeuLeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGluAsnGlyPheLeuTyr 26008 : TTGTTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAATGGTTTTCTTTAT : 25949 235 : ArgSerTyr : 237 |||!:!!:! ArgAsnPhe 25948 : AGAAATTTC : 25938 vulgar: NvOr198 134 237 . LHQN01017803.1 26246 25937 - 161 M 103 309 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25938 26246 161 - . gene_id 1 ; sequence NvOr198 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25938 26246 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25938 26246 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25938 26246 161 - . alignment_id 1 ; Query NvOr198 ; Align 26247 135 309 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr198 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 141 -> 220 Target range: 29607 -> 29370 142 : TyrMetLeuLeuProMetLeuProAlaValLeuAspLeuIleAsnProLeuAsnGluSer : 161 !:!! !:!! !!!!: !||| !|||||||||||||||:::||| !||||||||| PheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSer 29607 : TTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCG : 29550 162 : ArgProLysSerProLeuTyrMetValGluPheTyrIleAspGlnAspLysTyrPheTyr : 181 ||| ! !.!! !:!!||| !.!.!.!:! !:!!|||:!!!!::!!:!!!:!||| ArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyrTyr 29549 : CGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTACTAC : 29490 182 : SerValLeuThrHisAlaTyrIleThrSerLeuAlaGlyValLeuProLeuPheAlaThr : 201 ! !:!!:!! !||| ! ! !..!! ! !!.!! ! !!!!! !! !.!!:!! ! TyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIleSerCys 29489 : TATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGT : 29430 202 : AspLeuLeuPheSerAsnCysAlaHisHisAlaCysGlyIleIleLysIleLeuGly : 220 ||| !:!!!:!! !||| !!.!!!.||||||||||||:!!:!:!!.:!!! !||| AspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSerGly 29429 : GACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCTGGG : 29371 vulgar: NvOr198 141 220 . LHQN01017803.1 29607 29370 - 124 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29371 29607 124 - . gene_id 2 ; sequence NvOr198 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29371 29607 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29371 29607 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 29371 29607 124 - . alignment_id 2 ; Query NvOr198 ; Align 29608 142 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr198 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 141 -> 204 Target range: 33687 -> 33498 142 : TyrMetLeuLeuProMetLeuProAlaValLeuAspLeuIleAsnProLeuAsnGluSer : 161 !:! ! !|||:!::!!||| !:!!||||||||||||:::||||||||||||||| PheSerThrAlaProLeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSer 33687 : TTTTCTACCGCGCCCCTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCT : 33630 162 : ArgProLysSerProLeuTyrMetValGluPheTyrIleAspGlnAspLysTyrPheTyr : 181 ||||||:::! ! ! !|||! !.! ! ! !|||.!!:!!! !||| ! |||!:!||| ArgProArgLeuTyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyr 33629 : CGTCCACGTTTGTACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTAT : 33570 182 : SerValLeuThrHisAlaTyrIleThrSerLeuAlaGlyValLeuProLeuPheAlaThr : 201 ! !|||:!! !:!!.!! ! !! ! ! !!.!! !||| !||| !!!.!.!! TyrValValGlyTyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAla 33569 : TACGTCGTGGGGTACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCT : 33510 202 : AspLeuLeu : 204 |||:!!:!! AspIleIle 33509 : GACATTATT : 33499 vulgar: NvOr198 141 204 . LHQN01017803.1 33687 33498 - 107 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33499 33687 107 - . gene_id 3 ; sequence NvOr198 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33499 33687 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33499 33687 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33499 33687 107 - . alignment_id 3 ; Query NvOr198 ; Align 33688 142 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr211 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 144 -> 225 Target range: 26231 -> 25988 145 : AlaThrTyrSerLeuGluProLeuValProGlnIleLeuAspLysLeuSerProLeuAsn : 164 ||| !!:!! !! ! !|||!!!||| !!! !|||||||||! |||! !||||||||| AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsn 26231 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAAC : 26174 165 : GluSerArgProIleLysThrPheLeuGluValGluTyrLeuValAspHisArgArgTyr : 184 |||!!!||| !! ! ! !!! ! !!.! ! |||!!!||||||.!. !!:!||| GluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyr 26173 : GAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATAT : 26114 185 : TyrThrAlaIleTyrLeuHisAsnMetGlnAlaAlaCysTrpValIleLeuThrValLeu : 204 :!! ! !||| !|||! ! !.!!.! !:!!|||! !..! !!! ! HisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCys 26113 : CATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGC : 26054 205 : AlaIleAspAlaTyrPheValMetIleValGlnHisAlaCysSerMetPheAlaValLeu : 224 ||| !|||||| !!!:!||| !|||||||||||||||.!!:!!!!.|||:!! ! AlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAla 26053 : GCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCA : 25994 225 : Gly : 225 ||| Gly 25993 : GGG : 25989 vulgar: NvOr211 144 225 . LHQN01017803.1 26231 25988 - 123 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26231 123 - . gene_id 1 ; sequence NvOr211 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26231 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26231 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26231 123 - . alignment_id 1 ; Query NvOr211 ; Align 26232 145 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr211 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 146 -> 225 Target range: 29607 -> 29370 147 : TyrSerLeuGluProLeuValProGlnIleLeuAspLysLeuSerProLeuAsnGluSer : 166 !:!!!! !! ! !!:!!..!|||!:::!!|||||| :!!|||||| !||||||||| PheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSer 29607 : TTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCG : 29550 167 : ArgProIleLysThrPheLeuGluValGluTyrLeuValAspHisArgArgTyrTyrThr : 186 ||| !:!: !.!!! ! !.!.!.||| !||||||.!...!..!:!!||| ! ArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyrTyr 29549 : CGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTACTAC : 29490 187 : AlaIleTyrLeuHisAsnMetGlnAlaAlaCysTrpValIleLeuThrValLeuAlaIle : 206 !:!: !|||! :!:...!.! ! ! |||.!!!!!..! !:!!:!! ! TyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIleSerCys 29489 : TATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGT : 29430 207 : AspAlaTyrPheValMetIleValGlnHisAlaCysSerMetPheAlaValLeuGly : 225 |||.!! !!:!:!!! ||||||||||||||||||.!!:!:!!. !:!!! !||| AspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSerGly 29429 : GACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCTGGG : 29371 vulgar: NvOr211 146 225 . LHQN01017803.1 29607 29370 - 116 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29371 29607 116 - . gene_id 2 ; sequence NvOr211 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29371 29607 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29371 29607 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 29371 29607 116 - . alignment_id 2 ; Query NvOr211 ; Align 29608 147 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr199PSE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 84 -> 168 Target range: 33741 -> 33489 85 : IleGlnIleLeuAlaLysThrValLysPheGlyMetLeuIleAsnValGlyPheIleUnk : 104 |||...:!!|||:!!! ! !!.!..! ! !!!:! !|||...|||..! ! .!!... IleSerValLeuSerIleHisAlaSerValThrIleTyrIleGlyValSerValPheSer 33741 : ATTTCCGTTTTATCGATACATGCTTCAGTAACTATATACATTGGAGTGTCCGTGTTTTCT : 33684 105 : IleIleProLeuLeuProLeuValLeuAspIleValZedSerLeuAsnGluSerArgPro : 124 ! ! ||||||:!!|||!!!:!!||||||:!!:!!... !!|||||||||||||||||| ThrAlaProLeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgPro 33683 : ACCGCGCCCCTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCA : 33624 125 : LeuLysSerProPheThrCysGluPhePheValAspProAspLysTyrTyrPheThrIle : 144 ! ! !! ! !!!:!! !..! ! ! !!:! !!:!!|||||| ! ||||||!:! !:!! ArgLeuTyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrVal 33623 : CGTTTGTACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTC : 33564 145 : LeuAlaGlnAsnTyrIleSerAlaLeuAlaSerProLeuProLeuValGlyMetAspLeu : 164 :!!!.! ! !.! ! !!! ! ! !:!! !||| !||||||||| |||:!! ValGlyTyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAlaAspIle 33563 : GTGGGGTACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGACATT : 33504 165 : PhePheIleAsn : 168 .!!.!.|||:!! IleMetIleHis 33503 : ATTATGATACAT : 33490 vulgar: NvOr199PSE 84 168 . LHQN01017803.1 33741 33489 - 118 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33490 33741 118 - . gene_id 1 ; sequence NvOr199PSE ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33490 33741 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33490 33741 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33490 33741 118 - . alignment_id 1 ; Query NvOr199PSE ; Align 33742 85 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 176 Query range: 139 -> 218 Target range: 26225 -> 25988 140 : TyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgProLeuAsnGluThr : 159 !:!:!!! !!!.||||||..! !! :!!||||||:!!:!!! !||||||||||||||| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThr 26225 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACG : 26168 160 : ArgProArgGlnLeuIleTyrMetValGluPhePheIleAspGluAspLysTyrPheTyr : 179 ||| !!||| !!!!:!!||| !.! ! !:!|||:!!||||||||||||||| !||| ArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyr 26167 : CGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTAC : 26108 180 : GluIleGlnIleHisSerTyrAlaThrThrLeuIleGlyPheIleProLeuIleSerIle : 199 !||| ! |||! !||| !..!..!:!!!!: !.!! ! !!!! !:!! ! LeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCys 26107 : TTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGC : 26048 200 : AspThrPheTyrAlaAlaSerValGlnHisAlaCysGlyMetPheAlaIleLeuGly : 218 |||.!! !|||!.! !:!!||||||||||||||||||:!!!!.|||||| !||| AspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 26047 : GATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 25989 vulgar: NvOr204 139 218 . LHQN01017803.1 26225 25988 - 176 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26225 176 - . gene_id 1 ; sequence NvOr204 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26225 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26225 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26225 176 - . alignment_id 1 ; Query NvOr204 ; Align 26226 140 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 160 Query range: 136 -> 222 Target range: 14176 -> 13918 137 : IleIleCysTyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgProLeu : 156 :!!||| !:!:!!! ! ||| ! |||||| !:!!||||||:!!:!!! !||| ! ValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProLys 14176 : GTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAG : 14119 157 : AsnGluThrArgProArgGlnLeuIleTyrMetValGluPhePheIleAspGluAspLys : 176 ||||||:!!||| ! ! !! !|||||| !!.! ! !:!|||! !|||||| !!||| AsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLys 14118 : AACGAGTCACGAGACGTAGCGTACATTTATCCGGCCTATTATTTCACCGACGAGCATAAG : 14059 177 : TyrPheTyrGluIleGlnIleHisSerTyrAlaThrThrLeuIleGlyPheIleProLeu : 196 ||| ! ! ||| ! |||! ! :!!..!! !|||:!:! !||| ! !! ! TyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyr 14058 : TACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTAC : 13999 197 : IleSerIleAspThrPheTyrAlaAlaSerValGlnHisAlaCysGlyMetPheAlaIle : 216 :!!:!! !|||||| !||| ! ! !|||||||||!.!||||||:!!!!.|||:!: ValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaVal 13998 : GTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTG : 13939 217 : LeuGlyHisArgLeuArg : 222 ! !||| ::::::||| SerGly***LysIleArg 13938 : TCCGGgtaaaaaattcga : 13919 vulgar: NvOr204 136 222 . LHQN01017803.1 14176 13918 - 160 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13919 14176 160 - . gene_id 2 ; sequence NvOr204 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13919 14176 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13919 14176 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13919 14176 160 - . alignment_id 2 ; Query NvOr204 ; Align 14177 137 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 150 Query range: 137 -> 218 Target range: 29613 -> 29370 138 : IleCysTyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgProLeuAsn : 157 :!! !!:! ! ! ! !!.!!|||||| !||||||||||||||| !||| !||| ValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 29613 : GTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAAC : 29556 158 : GluThrArgProArgGlnLeuIleTyrMetValGluPhePheIleAspGluAspLysTyr : 177 |||:!!||| ! ! !!!|||||| !.!.!.!:! !:!!||||||!!::!!:!! GluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHis 29555 : GAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCAT : 29496 178 : PheTyrGluIleGlnIleHisSerTyrAlaThrThrLeuIleGlyPheIleProLeuIle : 197 !:!||| ! :!:..! !|||! ! !:!!..!! ! !:!!! !|||.!! !! !||| TyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIle 29495 : TACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATC : 29436 198 : SerIleAspThrPheTyrAlaAlaSerValGlnHisAlaCysGlyMetPheAlaIleLeu : 217 ||| !||||||.!!||| ! !! !||||||||||||||||||:!:!!. !:!!! ! SerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSer 29435 : TCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCT : 29376 218 : Gly : 218 ||| Gly 29375 : GGG : 29371 vulgar: NvOr204 137 218 . LHQN01017803.1 29613 29370 - 150 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29371 29613 150 - . gene_id 3 ; sequence NvOr204 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29371 29613 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29371 29613 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 29371 29613 150 - . alignment_id 3 ; Query NvOr204 ; Align 29614 138 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 139 -> 218 Target range: 18423 -> 18186 140 : TyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgProLeuAsnGluThr : 159 !:!:!!! ! ! |||!:::!! !! :!!:!!:!!! ! !!:! !!! !||| !||| PheIleGlnValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsnIleThr 18423 : TTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACG : 18366 160 : ArgProArgGlnLeuIleTyrMetValGluPhePheIleAspGluAspLysTyrPheTyr : 179 ! ! ! !! !:!!:!! ! ! ! !:!|||:!!||||||! :!!|||!:!||| ProSerLeuProValValValProGlyTyrTyrPheValAspGluValGluTyrTyrTyr 18365 : CCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTAT : 18306 180 : GluIleGlnIleHisSerTyrAlaThrThrLeuIleGlyPheIleProLeuIleSerIle : 199 ! ||| !:!!|||.!! ..!|||! !||||||! ! ! :!: !! ! !:!! ! TyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyrCysAlaCys 18305 : TACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 18246 200 : AspThrPheTyrAlaAlaSerValGlnHisAlaCysGlyMetPheAlaIleLeuGly : 218 |||||| !||| !!.! !|||||||||.!!||||||:!!||||||:!: !||| AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly 18245 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 18187 vulgar: NvOr204 139 218 . LHQN01017803.1 18423 18186 - 121 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18187 18423 121 - . gene_id 4 ; sequence NvOr204 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18187 18423 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18187 18423 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18187 18423 121 - . alignment_id 4 ; Query NvOr204 ; Align 18424 140 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 143 -> 200 Target range: 33675 -> 33504 144 : ProPheThrProPheValLeuAspLeuIleArgProLeuAsnGluThrArgProArgGln : 163 |||.!!! !||||||:!!|||||||||||| !||||||||||||:!!||||||||| ! ProLeuIleProPheIleLeuAspLeuIleSerProLeuAsnGluSerArgProArgLeu 33675 : CCCCTCATACCGTTCATCCTGGACCTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTG : 33618 164 : LeuIleTyrMetValGluPhePheIleAspGluAspLysTyrPheTyrGluIleGlnIle : 183 ! ! !|||! !.! ! ! !!:!.!!:!! !||| ! |||!:!||| ! :!! ! TyrAlaTyrLysAlaTyrCysTyrPheAsnProAspAspTyrTyrTyrTyrValValGly 33617 : TACGCCTATAAAGCCTACTGTTACTTCAATCCGGACGACTACTATTATTACGTCGTGGGG : 33558 184 : HisSerTyrAlaThrThrLeuIleGlyPheIleProLeuIleSerIleAsp : 200 :!!!!! !||| !! ! !!!:!.! :!! !|||:!!.!! !||| TyrThrSerAlaCysIleGlyMetAlaGlyLeuValLeuValGlyAlaAsp 33557 : TACACCAGCGCGTGCATAGGAATGGCCGGACTCGTGCTTGTCGGCGCTGAC : 33505 vulgar: NvOr204 143 200 . LHQN01017803.1 33675 33504 - 106 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33505 33675 106 - . gene_id 5 ; sequence NvOr204 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33505 33675 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33505 33675 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33505 33675 106 - . alignment_id 5 ; Query NvOr204 ; Align 33676 144 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr203 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 159 Query range: 138 -> 217 Target range: 26225 -> 25988 139 : TyrMetValLeuProLeuThrProIleIleLeuAspPheIleValProLeuAsnGluSer : 158 !:!||| !||||||!!!..! !! |||||||||.!!:!!:!!||||||||||||!!! PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThr 26225 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACG : 26168 159 : ArgProLysGlnProLeuIleMetAlaGluPhePheIleAspGlnAspLysTyrPheTyr : 178 ||| !!::! ! !:!! ! ||| ! !:!|||:!!|||:!!||||||||| !||| ArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyr 26167 : CGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTAC : 26108 179 : ProLeuMetIleHisAlaTyrLeuSerValLeuTyrGlyIleIleProLeuLeuGlyThr : 198 !:!!:!: ||| !|||||| !|||:!! !||| ! !!!!! !!.! ! LeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCys 26107 : TTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGC : 26048 199 : AspThrLeuTyrMetAsnCysValHisHisSerCysGlyMetLeuLysIleLeuGly : 217 |||.!! !|||:!! !!..!|||!!.|||:!!||||||:!!||| ||| !||| AspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 26047 : GATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 25989 vulgar: NvOr203 138 217 . LHQN01017803.1 26225 25988 - 159 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26225 159 - . gene_id 1 ; sequence NvOr203 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26225 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26225 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26225 159 - . alignment_id 1 ; Query NvOr203 ; Align 26226 139 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr203 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 145 Query range: 136 -> 229 Target range: 29613 -> 29334 137 : IleSerTyrMetValLeuProLeuThrProIleIleLeuAspPheIleValProLeuAsn : 156 :!! !!:!! !.!:!! !!:!!|||||| !:!!||||||.!!||| !||| !||| ValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 29613 : GTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAAC : 29556 157 : GluSerArgProLysGlnProLeuIleMetAlaGluPhePheIleAspGlnAspLysTyr : 176 ||||||||| ! ! !:!! ! |||.!.!:! !:!!|||:!!!!::!!:!! GluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHis 29555 : GAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCAT : 29496 177 : PheTyrProLeuMetIleHisAlaTyrLeuSerValLeuTyrGlyIleIleProLeuLeu : 196 !:!||| !|||||| !||| ! !! ! !:!! ! !! !.!!.!! !! !:!! TyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIle 29495 : TACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATC : 29436 197 : GlyThrAspThrLeuTyrMetAsnCysValHisHisSerCysGlyMetLeuLysIleLeu : 216 ..! !||||||:!!||||||||| !|||!!.|||:!!||||||:!:|||!!.:!!! ! SerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSer 29435 : TCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCT : 29376 217 : GlyAsnArgIleArgAsnIleLeuAsnSerSerSerArg : 229 ||| ! !||| !!.. !! !:::|||! !.!!||| Gly***AlaIlePheArgCysTyrSerSerIleGlyArg 29375 : GGGTAAGCAATTTTCAGATGTTACTCGAGTATCGGGCGG : 29335 vulgar: NvOr203 136 229 . LHQN01017803.1 29613 29334 - 145 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29335 29613 145 - . gene_id 2 ; sequence NvOr203 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29335 29613 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29335 29613 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 29335 29613 145 - . alignment_id 2 ; Query NvOr203 ; Align 29614 137 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr203 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 130 -> 206 Target range: 33711 -> 33483 131 : AlaValTyrSerAlaLeuIleSerTyrMetValLeuProLeuThrProIleIleLeuAsp : 150 .!!:!!|||! !!.!:!! ! !!:! ..! !||||||! !|||.!!||||||||| ThrIleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeuAsp 33711 : ACTATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTGGAC : 33654 151 : PheIleValProLeuAsnGluSerArgProLysGlnProLeuIleMetAlaGluPhePhe : 170 .!.||| !|||||||||||||||||||||::: ! ! ! !! ||| ! ! !!:! LeuIleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyrCysTyr 33653 : CTAATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTACTGTTAC : 33594 171 : IleAspGlnAspLysTyrPheTyrProLeuMetIleHisAlaTyrLeuSerValLeuTyr : 190 .!!:!!! !||| ! |||!:!||| !:!!:!! :!!.!! ! !!!!:!! ! PheAsnProAspAspTyrTyrTyrTyrValValGlyTyrThrSerAlaCysIleGlyMet 33593 : TTCAATCCGGACGACTACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATAGGAATG : 33534 191 : GlyIleIleProLeuLeuGlyThrAspThrLeuTyrMetAsnCysVal : 206 !.! !:!! !|||:!!|||.!!|||! !:!! !!::!! !||| AlaGlyLeuValLeuValGlyAlaAspIleIleMetIleHisLeuVal 33533 : GCCGGACTCGTGCTTGTCGGCGCTGACATTATTATGATACATCTTGTA : 33484 vulgar: NvOr203 130 206 . LHQN01017803.1 33711 33483 - 105 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33484 33711 105 - . gene_id 3 ; sequence NvOr203 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33484 33711 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33484 33711 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33484 33711 105 - . alignment_id 3 ; Query NvOr203 ; Align 33712 131 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr205PSE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 145 -> 224 Target range: 26225 -> 25988 146 : TrpMetLeuLeuProLeuAlaProLeuLeuLeuAspTyrIleLysProLeuAsnGluSer : 165 !::|||! !||||||!!!!.! !!! !:!!|||||| !:!!! !||||||||||||!!! PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThr 26225 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACG : 26168 166 : ArgSerLeuGlnProLeuPheMetValGluPheTyrIleAspProAspLysTyrPheTyr : 185 |||:!!! ! ! !:!!!:! !.! ! !:!!:!:!!||| !||||||||| !||| ArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyr 26167 : CGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTAC : 26108 186 : ThrIleLeuAlaGlnAsnTyrValCysAlaLeuValSerProIleSerIleIleAlaMet : 205 !|||:!!!.!!!.! |||:!! !.!:!!:!! ! ! ! !.!! !||| LeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCys 26107 : TTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGC : 26048 206 : AspLeuIlePheMetAsnCysAlaAsnHisIleCysGlyMetIleTrpIleLeuGly : 224 ||| !! !!:!:!! !!..!!.!.!.||| !||||||:!!:!: ||| !||| AspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 26047 : GATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 25989 vulgar: NvOr205PSE 145 224 . LHQN01017803.1 26225 25988 - 123 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26225 123 - . gene_id 1 ; sequence NvOr205PSE ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26225 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26225 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26225 123 - . alignment_id 1 ; Query NvOr205PSE ; Align 26226 146 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr205PSE Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 138 -> 211 Target range: 33708 -> 33489 139 : IleTyrAlaAlaValLeuGlnTrpMetLeuLeuProLeuAlaProLeuLeuLeuAspTyr : 158 |||||| !!.!|||! ! !!:: ! !|||||| !|||!!!:!!|||||| IleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeuAspLeu 33708 : ATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTGGACCTA : 33651 159 : IleLysProLeuAsnGluSerArgSerLeuGlnProLeuPheMetValGluPheTyrIle : 178 |||..!|||||||||||||||||| !!! ! ! ! !!:!! !.! ! ! !|||.!! IleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyrCysTyrPhe 33650 : ATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTACTGTTACTTC : 33591 179 : AspProAspLysTyrPheTyrThrIleLeuAlaGlnAsnTyrValCysAlaLeuValSer : 198 :!!|||||| ! |||!:!||| !:!!:!!!.! ! !.! !!.!||| ! !:!!:!! AsnProAspAspTyrTyrTyrTyrValValGlyTyrThrSerAlaCysIleGlyMetAla 33590 : AATCCGGACGACTACTATTATTACGTCGTGGGGTACACCAGCGCGTGCATAGGAATGGCC : 33531 199 : ProIleSerIleIleAlaMetAspLeuIlePheMetAsn : 211 !:!! !:!!:!!!.! |||:!!|||.!.!!::!! GlyLeuValLeuValGlyAlaAspIleIleMetIleHis 33530 : GGACTCGTGCTTGTCGGCGCTGACATTATTATGATACAT : 33490 vulgar: NvOr205PSE 138 211 . LHQN01017803.1 33708 33489 - 118 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33490 33708 118 - . gene_id 2 ; sequence NvOr205PSE ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33490 33708 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33490 33708 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33490 33708 118 - . alignment_id 2 ; Query NvOr205PSE ; Align 33709 139 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr211 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 136 -> 224 Target range: 475509 -> 475773 137 : ThrLeuCysIleIleGlySerLeuAlaThrTyrSerLeuGluProLeuValProGlnI : 156 |||:!! :!! ! !!!!:!! !||| ! !||| ! !!!! ! !!:!!| ThrValLeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerSerLysI 475510 : ACAGTACTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGTCTAAGA : 475567 157 : leLeuAspLysLeuSerProLeuAsnGluSerArgProIleLysThrPheLeuGluVa : 175 ||||||||...|||! !|||||||||||||||||||||! ! !:!!.!.:::...:: leLeuAspSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleArgIl 475568 : TCCTTGATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaat : 475624 176 : lGluTyrLeuValAspHisArgArgTyrTyrThrAlaIleTyrLeuHisAsnMetGln : 194 :||||||...::::::.!.!:!!:!|||!:! ! !! ! :!!:!!.!.! ! eGluTyrPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrVal 475625 : agaatatttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGTA : 475681 195 : AlaAlaCysTrpValIleLeuThrValLeuAlaIleAspAlaTyrPheValMetIleV : 214 .!! ! ! ! !! ! !||| !:!!|||! !!!:||| |||..!||| : ThrIleLeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrpL 475682 : ACGATCCTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGGT : 475741 215 : alGlnHisAlaCysSerMetPheAlaValLeu : 224 !!||||||..! |||:::||| :::::: euGlnHisCysIleSerLeuPheGluIleVal 475742 : TGCAACATTGCATaagtttatttgaaattgtt : 475773 vulgar: NvOr211 136 224 . KQ414815.1 475509 475773 + 122 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475510 475773 122 + . gene_id 1 ; sequence NvOr211 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475510 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475510 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475510 475773 122 + . alignment_id 1 ; Query NvOr211 ; Align 475510 137 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr211 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 151 -> 221 Target range: 457195 -> 457405 152 : LeuValProGlnIleLeuAspLysLeuSerProLeuAsnGluSerArgProIleLysT : 171 ||| !!||| !:!!||||||! :!! !||||||||||||||||||||| !:!! LeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgProCysGluL 457196 : CTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGT : 457253 172 : hrPheLeuGluValGluTyrLeuValAspHisArgArgTyrTyrThrAlaIleTyrLe : 190 !!:!||| !!.!||||||!!!|||||| !:!!:!||| ! !||| ! euTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAl 457254 : TATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGC : 457310 191 : uHisAsnMetGlnAlaAlaCysTrpValIleLeuThrValLeuAlaIleAspAlaTyr : 209 !|||! !!!: !..! ! !.! ! !|||:!! !|||! !!!::!!! aHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeu 457311 : GCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTA : 457367 210 : PheValMetIleValGlnHisAlaCysSerMetPhe : 221 .!!:!!! !! !|||! !|||!.!|||.!!:!!||| LeuIleThrAsnValLeuHisValCysGlyLeuPhe 457368 : CTTATAACGAACGTACTGCACGTTTGTGGATTGTTC : 457405 vulgar: NvOr211 151 221 . KQ414815.1 457195 457405 + 118 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457196 457405 118 + . gene_id 2 ; sequence NvOr211 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457196 457405 . + . KQ414815.1 exonerate:protein2genome:local exon 457196 457405 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457196 457405 118 + . alignment_id 2 ; Query NvOr211 ; Align 457196 152 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr211 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 155 -> 224 Target range: 482031 -> 482238 156 : IleLeuAspLysLeuSerProLeuAsnGluSerArgProIleLysThrPheLeuGluV : 175 :!!|||||| :!! !||||||||||||!!!||| !! !:!! ! :!!..!: ValLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerM 482032 : GTTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAA : 482089 176 : alGluTyrLeuValAspHisArgArgTyrTyrThrAlaIleTyrLeuHisAsnMetGl : 194 !!||||||!!!:!!|||!!.!:!!:!|||! ! !||| !!!|||.!. ! etGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPh 482090 : TGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTT : 482146 195 : nAlaAlaCysTrpValIleLeuThrValLeuAlaIleAspAlaTyrPheValMetIle : 213 :!! ! ! ||| ! !! !:!!:!!!.!|||!!:.!!! .!!|||||| eSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrp 482147 : TTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGG : 482203 214 : ValGlnHisAlaCysSerMetPheAlaValLeu : 224 :!!:!!||||||...|||:!!|||.!!:!!:!! LeuGluHisAlaAlaSerLeuPheThrLeuVal 482204 : CTTGAACACGCTGCAAGCTTGTTCACCCTTGTA : 482238 vulgar: NvOr211 155 224 . KQ414815.1 482031 482238 + 104 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482032 482238 104 + . gene_id 3 ; sequence NvOr211 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482032 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 482032 482238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482032 482238 104 + . alignment_id 3 ; Query NvOr211 ; Align 482032 156 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr198 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 188 Query range: 90 -> 219 Target range: 475301 -> 475773 91 : GlnArgLysLeuLysSerIleLeuGluLysIleLysTyrAspTrpAsnLysPheThrA : 110 |||! !:!!:!!|||..!:!!:!!|||||||||||||||||||||! ! !.!!!.!| GlnIleGlnValLysGlnLeuMetGluLysIleLysTyrAspTrpMetThrIleAsnA 475302 : CAAATACAGGTGAAGCAGTTAATGGAGAAGATAAAGTACGATTGGATGACGATCAACG : 475359 111 : spLysLysGluIleGluMetLeuCysTyrTyrSerHisArgGlyLysSerLeuAsnTh : 129 ||:!! !|||:!!...:::||| :!!:!!|||||||||.!!!!!!..! spGluGlyGluLeuArgIleLeuLysAsnAsnAlaTyrArgGlyLysGlyPheThrIl 475360 : ACGAGGGAGAGCTTagaatcttgaaaaataacgCTTACAGAGGAAAAGGATTCACGAT : 475416 130 : rValTyrIle{G} >>>> Target Intron 1 >>>> {ly}LeuValAlaVal : 137 !:!!!:! !{ } 85 bp { !}|||||| ! ! eIlePheAla{L}++ ++{eu}LeuValTyrPro 475417 : CATTTTCGCA{T}gt.........................ag{TA}CTGGTATACCCA : 475525 138 : ValLeuLeuSerTyrMetLeuLeuProMetLeuProAlaValLeuAspLeuIleAsnP : 157 ..!:!!!!!!!! !!:||||||! !.!.! ! !! !:!!||||||! !:!: | ThrIlePheThrMetIleLeuLeuLeuPheSerSerLysIleLeuAspSerLeuLeuP 475526 : ACAATATTCACCATGATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTAC : 475585 158 : roLeuAsnGluSerArgProLysSerProLeuTyrMetValGluPheTyrIleAspGl : 176 ||||||||||||||||||||!..!!! !!||| :::|||::::::|||::::! roLeuAsnGluSerArgProSerTrpSerLeuIleArgIleGluTyrPheIleAsnGl 475586 : CCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaatagaatatttcataaacGA : 475642 177 : nAspLysTyrPheTyrSerValLeuThrHisAlaTyrIleThrSerLeuAlaGlyVal : 195 !.!.|||||||||||| ! !:!!! !:!! ! !:!!|||! !||| ! !! ! uGlnLysTyrPheTyrLeuSerValIleTyrGlnThrValThrIleLeuLeuPheGly 475643 : ACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGTAACGATCCTTCTGTTTGGT : 475699 196 : LeuProLeuPheAlaThrAspLeuLeuPheSerAsnCysAlaHisHisAlaCysGlyI : 215 ! !!! ! ! ||||||!!: !:!!|||!!!! !! !!!.|||..! ...: ThrThrTyrValAlaThrGluAlaIlePheThrMetTrpLeuGlnHisCysIleSerL 475700 : ACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGGTTGCAACATTGCATaagtt : 475759 216 : leIleLysIleLeu : 219 ::...:::|||::: euPheGluIleVal 475760 : tatttgaaattgtt : 475773 vulgar: NvOr198 90 219 . KQ414815.1 475301 475773 + 188 M 42 126 S 0 1 5 0 2 I 0 81 3 0 2 S 1 2 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475302 475773 188 + . gene_id 1 ; sequence NvOr198 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 475302 475428 . + . KQ414815.1 exonerate:protein2genome:local exon 475302 475428 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 475429 475430 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 475429 475513 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 475512 475513 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 475514 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475514 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475302 475773 188 + . alignment_id 1 ; Query NvOr198 ; Align 475302 91 126 ; Align 475516 134 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr198 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 93 -> 218 Target range: 464388 -> 464840 94 : LeuLysSerIleLeuGluLysIleLysTyrAspTrpAsnLysPheThrAspLysLysG : 113 :!!!:! !:!!!!! !::!:!:!:!||||||||||||! !.!. !:!!! ! ! | ValArgLeuLeuPheLeuArgValArgTyrAspTrpAsnThrLeuGlnAsnThrAspG 464389 : GTGAGACTGCTTTTTTTACGGGTGAGATATGACTGGAACACGCTACAAAACACGGATG : 464446 114 : luIleGluMetLeuCysTyrTyrSerHisArgGlyLysSerLeuAsnThrValTyrIl : 132 || !.!.!!:||| ! |||!!!.!.!!!!.!! ! !:!!|||! !:!!:!!:! luTyrAsnIleLeuLysLysTyrThrGluSerAlaThrLeuValAsnLysIleHisLe 464447 : AATATAATATTCTGAAAAAGTATACCGAGAGCGCTACACTTGTTAACAAAATCCACTT : 464503 133 : e{G} >>>> Target Intron 1 >>>> {ly}LeuValAlaValValLeuLeu : 140 !{ } 74 bp { !}! ! !! ! !|||:!!||| u{M}++ ++{et}CysPheIleProValIleLeu 464504 : A{A}gt.........................ag{TG}TGCTTCATTCCCGTTATACTG : 464601 141 : SerTyrMetLeuLeuProMetLeuProAlaValLeuAspLeuIleAsnProLeuAsnG : 160 ! ! ! |||||| !:!:||||||! !:!!||||||:!!:!! |||||||||| PheIleCysLeuLeuGluValLeuProAspIleLeuAspValValAlaProLeuAsnG 464602 : TTCATCTGTTTACTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATG : 464661 161 : luSerArgProLysSerProLeuTyrMetValGluPheTyrIle<->AspGlnAspLy : 178 |||||||| !! ! ..! !||| !! !.!||||||!:!||| |||...... luSerArgSerHisGlnTyrLeuIleThrAlaGluPhePheIleThrAspSerSerPr 464662 : AATCTCGTTCTCATCAATACTTAATTACCGCGGAATTTTTCATCACTGATAGTTCGCC : 464718 179 : sTyrPheTyrSerValLeuThrHisAlaTyrIleThrSerLeuAlaGlyValLeuPro : 197 ! !!!:! ! !..!! !..! !.!! !!|||||| !:!! !|||||| ! !! oAsnTyrIleValThrCysValGlyThrAspIleThrLeuIleMetGlyValThrThr 464719 : GAATTATATCGTAACTTGTGTTGGTACGGATATTACTCTTATCATGGGAGTCACGACA : 464775 198 : LeuPheAlaThrAspLeuLeuPheSerAsnCysAlaHisHisAlaCysGlyIleIleL : 217 :!!.!!|||:!!!!: !!!! !! ! ! !!!.||| !|||!.!!!:.!!| IleIleAlaSerGluThrPheThrPheLeuLeuLeuGlnHisIleCysAlaMetPheL 464776 : ATAATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAATGTTCA : 464835 218 : ysIle : 218 ||||| ysIle 464836 : AAATC : 464840 vulgar: NvOr198 93 218 . KQ414815.1 464388 464840 + 135 M 39 117 S 0 1 5 0 2 I 0 70 3 0 2 S 1 2 M 41 123 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464389 464840 135 + . gene_id 2 ; sequence NvOr198 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 464389 464506 . + . KQ414815.1 exonerate:protein2genome:local exon 464389 464506 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 464507 464508 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 464507 464580 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 464579 464580 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 464581 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464581 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464389 464840 135 + . alignment_id 2 ; Query NvOr198 ; Align 464389 94 117 ; Align 464583 134 123 ; Align 464709 175 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr198 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 144 -> 218 Target range: 457189 -> 457411 145 : LeuProMetLeuProAlaValLeuAspLeuIleAsnProLeuAsnGluSerArgProL : 164 |||! !:!:!!!||| !:!!||||||:!!:!: !||||||||||||||||||||| LeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgProC 457190 : TTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCT : 457247 165 : ysSerProLeuTyrMetValGluPheTyrIleAspGlnAspLysTyrPheTyrSerVa : 183 ..! !! ! !! !.!|||!:!!:!:!!|||..! ! ||||||.!.:!!! !:! ysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIl 457248 : GTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATAT : 457304 184 : lLeuThrHisAlaTyrIleThrSerLeuAlaGlyValLeuProLeuPheAlaThrAsp : 202 !:!!.!!||| ! !! ! !||| !!.!!.! ! !!||| |||!.!!!: eIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGlu 457305 : CATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAA : 457361 203 : LeuLeuPheSerAsnCysAlaHisHisAlaCysGlyIleIleLysIle : 218 ! !|||.!!! !!.. !!.!! |||!.!||||||:!:.!!|||:!! SerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457362 : TCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: NvOr198 144 218 . KQ414815.1 457189 457411 + 126 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457190 457411 126 + . gene_id 3 ; sequence NvOr198 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457190 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457190 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457190 457411 126 + . alignment_id 3 ; Query NvOr198 ; Align 457190 145 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr198 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 133 -> 220 Target range: 448040 -> 448301 134 : LeuValAlaValValLeuLeuSerTyrMetLeuLeuProMetLeuProAlaValLeuA : 153 :!! !!|||:!! !|||:!!|||!:!! |||:!! !.!.:!! ! |||| ValPheAlaLeuSerLeuIleSerPheThrLeuValGluPheValValHisPheLeuA 448041 : GTGTTTGCCTTGTCTTTAATTAGCTTTACCTTGGTTGAGTTCGTGGTAcattttctcg : 448098 154 : spLeuIleAsnProLeuAsnGluSerArgProLysSerProLeuTyrMetValGluPh : 172 ||::::::! |||:!!|||! !|||! !! ! ! ..!! !! !!:!:!::!!:!!! spIleLeuMetProMetAsnValSerThrArgHisGluLeuProPheLeuIleGlnCy 448099 : atattttaATGCCAATGAACGTATCTACACGGCACGAGCTACCCTTCCTAATTCAATG : 448155 173 : eTyrIleAspGlnAspLysTyrPheTyrSerValLeuThrHisAlaTyrIleThrSer : 191 !!:! !||||||||||||!:!|||:!!! !:!!|||..! ! ! !:!! !!!! sPheCysAspGlnAspLysPhePheHisTyrIleLeuValPheLeuIleValLeuThr 448156 : TTTCTGTGATCAAGATAAATTCTTCCACTATATATTAGTTTTCTTGATCGTTCTCACT : 448212 192 : LeuAlaGlyValLeuProLeuPheAlaThrAspLeuLeuPheSerAsnCysAlaHisH : 211 :!! !|||! ! ! !:!!!!.|||||| ! !!:!! !! ! !::!!!.| IleLeuGlyGlySerValValLeuAlaThrThrThrThrTyrLeuIlePheSerGlnH 448213 : ATTTTGGGTGGAAGTGTGGTATTAGCCACTACAACGACTTACTTGATATTCAGTCAAC : 448272 212 : isAlaCysGlyIleIleLysIleLeuGly : 220 ||..!||||||:!:.!!|||||| !||| isCysCysGlyLeuPheLysIleAlaGly 448273 : ATTGTTGTGGATTGTTCAAAATTGCAGGG : 448301 vulgar: NvOr198 133 220 . KQ414815.1 448040 448301 + 125 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448041 448301 125 + . gene_id 4 ; sequence NvOr198 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448041 448301 . + . KQ414815.1 exonerate:protein2genome:local exon 448041 448301 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448041 448301 125 + . alignment_id 4 ; Query NvOr198 ; Align 448041 134 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr205PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 139 -> 219 Target range: 457162 -> 457402 140 : TyrAlaAlaValLeuGlnTrpMetLeuLeuProLeuAlaProLeuLeuLeuAspTyrI : 159 |||..!!.!!.!||| ! !|||! !||| !|||:!!||||||||| !: TyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleV 457163 : TATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTG : 457220 160 : leLysProLeuAsnGluSerArgSerLeuGlnProLeuPheMetValGluPheTyrIl : 178 !: |||||||||||||||||| !!! !:!! !! !.!!! !.!|||!:!!:!:! alValProLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheVa 457221 : TGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGT : 457277 179 : eAspProAspLysTyrPheTyrThrIleLeuAlaGlnAsnTyrValCysAlaLeuVal : 197 !||| ! ! ||||||.!.:!! !|||:!!|||!!.! ! !..!||| !|||:!! lAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIle 457278 : CGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATC : 457334 198 : SerProIleSerIleIleAlaMetAspLeuIlePheMetAsnCysAlaAsnHisIleC : 217 :!! !!! !!!!:!!! !|||! !!:! !:!!.!!!!:!.. !!.! |||:!!| AlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValC 457335 : GCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTT : 457394 218 : ysGlyMet : 219 |||||:!! ysGlyLeu 457395 : GTGGATTG : 457402 vulgar: NvOr205PSE 139 219 . KQ414815.1 457162 457402 + 136 M 80 240 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457163 457402 136 + . gene_id 1 ; sequence NvOr205PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457163 457402 . + . KQ414815.1 exonerate:protein2genome:local exon 457163 457402 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457163 457402 136 + . alignment_id 1 ; Query NvOr205PSE ; Align 457163 140 240 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr205PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 137 -> 223 Target range: 475515 -> 475773 138 : LeuIleTyrAlaAlaValLeuGlnTrpMetLeuLeuProLeuAlaProLeuLeuLeuA : 157 |||:!!||| !!.!!:!!!!! !!!:||||||! !!!!:!! !! !:!!|||| LeuValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerSerLysIleLeuA 475516 : CTGGTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGTCTAAGATCCTTG : 475573 158 : spTyrIleLysProLeuAsnGluSerArgSerLeuGlnProLeuPheMetValGluPh : 176 ||! !:!: !|||||||||||||||||| !! ! ! !!|||... :::|||:: spSerLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleArgIleGluTy 475574 : ATTCTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaatagaata : 475630 177 : eTyrIleAspProAspLysTyrPheTyrThrIleLeuAlaGlnAsnTyrValCysAla : 195 ::::|||::: !.!.|||||||||||| !! !:!! ! ! .!. !||| ! rPheIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrValThrIle 475631 : tttcataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGTAACGATC : 475687 196 : LeuValSerProIleSerIleIleAlaMetAspLeuIlePheMetAsnCysAlaAsnH : 215 |||:!!! ! !! !!!! !:!!|||! !!: !||||||! ! !! !.!.| LeuLeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrpLeuGlnH 475688 : CTTCTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGGTTGCAAC : 475747 216 : isIleCysGlyMetIleTrpIleLeu : 223 || ! ...:::... |||::: isCysIleSerLeuPheGluIleVal 475748 : ATTGCATaagtttatttgaaattgtt : 475773 vulgar: NvOr205PSE 137 223 . KQ414815.1 475515 475773 + 116 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475516 475773 116 + . gene_id 2 ; sequence NvOr205PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475516 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475516 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475516 475773 116 + . alignment_id 2 ; Query NvOr205PSE ; Align 475516 138 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr205PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 136 -> 223 Target range: 481977 -> 482238 137 : GlyLeuIleTyrAlaAlaValLeuGlnTrpMetLeuLeuProLeuAlaProLeuLeuL : 156 ..!||||||||| !!:!!|||||| ! !!!:|||! !! !:!!:!! !!!!:!!| AlaLeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerPheValL 481978 : gcGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTC : 482035 157 : euAspTyrIleLysProLeuAsnGluSerArgSerLeuGlnProLeuPheMetValGl : 175 ||||| !||| ||||||||||||!!!|||!!!! !||| !! ! ! :!!|| euAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMetGl 482036 : TAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGA : 482092 176 : uPheTyrIleAspProAspLysTyrPheTyrThrIleLeuAlaGlnAsnTyrValCys : 194 |!:!!:!||||||! !.!.||||||! ! !||| ! !!!..!.!:: !!! ! uTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSer 482093 : GTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCC : 482149 195 : AlaLeuValSerProIleSerIleIleAlaMetAspLeuIlePheMetAsnCysAlaA : 214 !|||||| ! !!! ! !|||:!!!.!!!:!!: !:!:.!!:!:! !! !. PheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuG 482150 : TTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTG : 482209 215 : snHisIleCysGlyMetIleTrpIleLeu : 223 !.||| !....!!:!!.!! :!!:!! luHisAlaAlaSerLeuPheThrLeuVal 482210 : AACACGCTGCAAGCTTGTTCACCCTTGTA : 482238 vulgar: NvOr205PSE 136 223 . KQ414815.1 481977 482238 + 102 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481978 482238 102 + . gene_id 3 ; sequence NvOr205PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481978 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 481978 482238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481978 482238 102 + . alignment_id 3 ; Query NvOr205PSE ; Align 481978 137 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr203 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 90 -> 215 Target range: 456822 -> 457411 91 : ValLysIleIleLeuGluLysIleGlnAspAspTrpLysSerLeuGluAspAspSerG : 110 :!!::! |||! !!!:!!.||| ||||||||||||||||||:!!:!! ..!| IleArgGluIleTyrAspAsnIleAlaAspAspTrpLysSerLeuLysAsnMetGluG 456823 : ATACGGGAGATTTACGACAATATCGCTGACGATTGGAAATCATTGAAGAACATGGAAG : 456880 111 : luIleLysIleLeuSerTyrTyrAlaArgLeuGlyLysLeuPheAsnPheMetTyrIl : 129 |||||:::|||::: ||||||!.! !|||!:! !|||!...!! luIleGluIleIleArgLysTyrAlaAsnGlyGlyArgArgPheThrLeuAlaIleAl 456881 : AAATCGagattattcgaaaatatgcGAACGGTGGCAGGAGATTTACACTTGCAATAGC : 456937 130 : e{G} >>>> Target Intron 1 >>>> {ly}AlaValTyrSerAlaLeuIle : 137 !{ } 214 bp { !}:!!..!|||!!!!.! !:!: a{I}++ ++{le}SerThrTyrCysGlyAlaLeu 456938 : A{A}gt.........................ag{TT}TCTACTTATTGTGGCGCACTG : 457175 138 : SerTyrMetValLeuProLeuThrProIleIleLeuAspPheIleValProLeuAsnG : 157 ! !! ..!|||! !||| !||||||:!!||||||.!!:!:||||||||||||| ValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnG 457176 : GTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACG : 457235 158 : luSerArgProLysGlnProLeuIleMetAlaGluPhePheIleAspGlnAspLysTy : 176 ||||||||||| :!! !! !:!!! ||||||!:!|||:!!|||..! ! ||||| luSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTy 457236 : AATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTA : 457292 177 : rPheTyrProLeuMetIleHisAlaTyrLeuSerValLeuTyrGlyIleIleProLeu : 195 |.!.:!! !:!!!!: ||| ! ! !!!!:!!||| !!.! !! ! !!||| rMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeu 457293 : TATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTA : 457349 196 : LeuGlyThrAspThrLeuTyrMetAsnCysValHisHisSerCysGlyMetLeuLysI : 215 !!.!!.!!!::!!||| !!!:!.. !|||! ||| !||||||:!!!!!|||: ThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysL 457350 : ACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGC : 457409 216 : le : 215 !! eu 457410 : TT : 457411 vulgar: NvOr203 90 215 . KQ414815.1 456822 457411 + 205 M 39 117 S 0 1 5 0 2 I 0 210 3 0 2 S 1 2 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 456823 457411 205 + . gene_id 1 ; sequence NvOr203 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 456823 456940 . + . KQ414815.1 exonerate:protein2genome:local exon 456823 456940 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 456941 456942 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 456941 457154 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457153 457154 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457155 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457155 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 456823 457411 205 + . alignment_id 1 ; Query NvOr203 ; Align 456823 91 117 ; Align 457157 131 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr203 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 179 Query range: 147 -> 217 Target range: 485722 -> 485932 148 : IleLeuAspPheIleValProLeuAsnGluSerArgProLysGlnProLeuIleMetA : 167 |||||||||.!!:!::!!||||||||| ! !!!||||||::! ! !! !|||! : IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 168 : laGluPhePheIleAspGlnAspLysTyrPheTyrProLeuMetIleHisAlaTyrLe : 186 !!||| !|||:!!||||||.!.|||||||||||||||:!! !|||!.! !|| erGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLe 485781 : CGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCT : 485837 187 : uSerValLeuTyrGlyIleIleProLeuLeuGlyThrAspThrLeuTyrMetAsnCys : 205 |! !|||:!! !||| ||| !||||||.!!|||::: ||| ||| uPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIle 485838 : CTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATA : 485894 206 : ValHisHisSerCysGlyMetLeuLysIleLeuGly : 217 :!!!!.|||!!!||||||:!!! !! !|||:!!||| IleGlnHisThrCysGlyLeuTyrThrIleValGly 485895 : ATACAGCACACCTGTGGTTTGTATACAATCGTTGGG : 485932 vulgar: NvOr203 147 217 . KQ414815.1 485722 485932 + 179 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485932 179 + . gene_id 2 ; sequence NvOr203 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485932 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485932 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485723 485932 179 + . alignment_id 2 ; Query NvOr203 ; Align 485723 148 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr203 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 131 -> 216 Target range: 475518 -> 475773 132 : ValTyrSerAlaLeuIleSerTyrMetValLeuProLeuThrProIleIleLeuAspP : 151 |||||| !!.!!:!!.!!!!! !!::!!|||! !!!!:!! !!! |||||||||! ValTyrProThrIlePheThrMetIleLeuLeuLeuPheSerSerLysIleLeuAspS 475519 : GTATACCCAACAATATTCACCATGATATTGCTTCTCTTCTCGTCTAAGATCCTTGATT : 475576 152 : heIleValProLeuAsnGluSerArgProLysGlnProLeuIleMetAlaGluPhePh : 170 !:!::!!|||||||||||||||||||||!.. ! !!|||||| |||:::|| erLeuLeuProLeuAsnGluSerArgProSerTrpSerLeuIleArgIleGluTyrPh 475577 : CTTTGTTACCCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaatagaatattt : 475633 171 : eIleAspGlnAspLysTyrPheTyrProLeuMetIleHisAlaTyrLeuSerValLeu : 189 ||||::::!!.!.||||||||||||! ! !:!!|||:!! ! !:!!!!!:!!||| eIleAsnGluGlnLysTyrPheTyrLeuSerValIleTyrGlnThrValThrIleLeu 475634 : cataaacGAACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGTAACGATCCTT : 475690 190 : TyrGlyIleIleProLeuLeuGlyThrAspThrLeuTyrMetAsnCysValHisHisS : 209 ! !! ! !!! !:!!!.!|||!!:.!!:!!!:!! ! !! :!!!!.|||! LeuPheGlyThrThrTyrValAlaThrGluAlaIlePheThrMetTrpLeuGlnHisC 475691 : CTGTTTGGTACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGGTTGCAACATT : 475750 210 : erCysGlyMetLeuLysIleLeu : 216 !! ...:::...:::|||::: ysIleSerLeuPheGluIleVal 475751 : GCATaagtttatttgaaattgtt : 475773 vulgar: NvOr203 131 216 . KQ414815.1 475518 475773 + 134 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475519 475773 134 + . gene_id 3 ; sequence NvOr203 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475519 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475519 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475519 475773 134 + . alignment_id 3 ; Query NvOr203 ; Align 475519 132 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr203 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 131 -> 216 Target range: 481983 -> 482238 132 : ValTyrSerAlaLeuIleSerTyrMetValLeuProLeuThrProIleIleLeuAspP : 151 :!!||| !!:!!:!!:!:! ! !!::!!! !! !:!!:!! !.!!:!!|||||| IleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspV 481984 : ATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACG : 482041 152 : heIleValProLeuAsnGluSerArgProLysGlnProLeuIleMetAlaGluPhePh : 170 !!||||||||||||||||||!!!||| !! ! ||| !! !:!! !|||!:!|| alIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPh 482042 : TCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTT : 482098 171 : eIleAspGlnAspLysTyrPheTyrProLeuMetIleHisAlaTyrLeuSerValLeu : 189 ||||||||||.!.||||||! ! !:!!! !.!!||| !!::!!!||| !!||| eIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeu 482099 : CATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTC : 482155 190 : TyrGlyIleIleProLeuLeuGlyThrAspThrLeuTyrMetAsnCysValHisHisS : 209 ! ! !! !:!!:!!|||! !!!:|||||| !:!:! !! :!!.!.|||: ValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisA 482156 : GTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACG : 482215 210 : erCysGlyMetLeuLysIleLeu : 216 !!....!!:!!!!!! :!!:!! laAlaSerLeuPheThrLeuVal 482216 : CTGCAAGCTTGTTCACCCTTGTA : 482238 vulgar: NvOr203 131 216 . KQ414815.1 481983 482238 + 127 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481984 482238 127 + . gene_id 4 ; sequence NvOr203 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481984 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 481984 482238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481984 482238 127 + . alignment_id 4 ; Query NvOr203 ; Align 481984 132 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr203 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 134 -> 217 Target range: 448052 -> 448301 135 : AlaLeuIleSerTyrMetValLeuProLeuThrProIleIleLeuAspPheIleValP : 154 :!!|||||||||!:!! :!!:!! !!!!..! ! ...||||||...::::!!| SerLeuIleSerPheThrLeuValGluPheValValHisPheLeuAspIleLeuMetP 448053 : TCTTTAATTAGCTTTACCTTGGTTGAGTTCGTGGTAcattttctcgatattttaATGC : 448110 155 : roLeuAsnGluSerArgProLysGlnProLeuIleMetAlaGluPhePheIleAspGl : 173 ||:!!|||! !|||! !! ! ! :!!! !! !.!!:!: !:!!! !||| !||||| roMetAsnValSerThrArgHisGluLeuProPheLeuIleGlnCysPheCysAspGl 448111 : CAATGAACGTATCTACACGGCACGAGCTACCCTTCCTAATTCAATGTTTCTGTGATCA : 448167 174 : nAspLysTyrPheTyrProLeuMetIleHisAlaTyrLeuSerValLeuTyrGlyIle : 192 |||||||!:!|||:!! !:!!:!::!! ! ! !:!! !..!:!!! ||| ! nAspLysPhePheHisTyrIleLeuValPheLeuIleValLeuThrIleLeuGlyGly 448168 : AGATAAATTCTTCCACTATATATTAGTTTTCTTGATCGTTCTCACTATTTTGGGTGGA : 448224 193 : IleProLeuLeuGlyThrAspThrLeuTyrMetAsnCysValHisHisSerCysGlyM : 212 ! ! !:!!|||!.!||| ||| !|||:!!! ! ! !!!.|||!!!||||||: SerValValLeuAlaThrThrThrThrTyrLeuIlePheSerGlnHisCysCysGlyL 448225 : AGTGTGGTATTAGCCACTACAACGACTTACTTGATATTCAGTCAACATTGTTGTGGAT : 448284 213 : etLeuLysIleLeuGly : 217 !!!!!|||||| !||| euPheLysIleAlaGly 448285 : TGTTCAAAATTGCAGGG : 448301 vulgar: NvOr203 134 217 . KQ414815.1 448052 448301 + 124 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448053 448301 124 + . gene_id 5 ; sequence NvOr203 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448053 448301 . + . KQ414815.1 exonerate:protein2genome:local exon 448053 448301 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448053 448301 124 + . alignment_id 5 ; Query NvOr203 ; Align 448053 135 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr203 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 134 -> 215 Target range: 464594 -> 464840 135 : AlaLeuIleSerTyrMetValLeuProLeuThrProIleIleLeuAspPheIleValP : 154 !.!:!!:!:! ! ! :!!||| !:!! !||| !||||||||| ! :!!!.!| ValIleLeuPheIleCysLeuLeuGluValLeuProAspIleLeuAspValValAlaP 464595 : GTTATACTGTTCATCTGTTTACTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGC : 464652 155 : roLeuAsnGluSerArgProLysGlnProLeuIleMetAlaGluPhePheIle<->As : 172 ||||||||||||||||| !! ! ||| !||||||! ||||||||||||||| || roLeuAsnGluSerArgSerHisGlnTyrLeuIleThrAlaGluPhePheIleThrAs 464653 : CCCTCAATGAATCTCGTTCTCATCAATACTTAATTACCGCGGAATTTTTCATCACTGA : 464709 173 : pGlnAspLysTyrPheTyrProLeuMetIleHisAlaTyrLeuSerValLeuTyrGly : 191 |...... ! !!!:! ! ! ! :!! !.!! !!:!!!!!:!!:!! ||| pSerSerProAsnTyrIleValThrCysValGlyThrAspIleThrLeuIleMetGly 464710 : TAGTTCGCCGAATTATATCGTAACTTGTGTTGGTACGGATATTACTCTTATCATGGGA : 464766 192 : IleIleProLeuLeuGlyThrAspThrLeuTyrMetAsnCysValHisHisSerCysG : 211 :!!! !!:!!:!!!.!:!!!!:|||!!! !.!. ! :!!!!.|||! !|||! ValThrThrIleIleAlaSerGluThrPheThrPheLeuLeuLeuGlnHisIleCysA 464767 : GTCACGACAATAATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCG : 464826 212 : lyMetLeuLysIle : 215 .!|||!!!|||||| laMetPheLysIle 464827 : CAATGTTCAAAATC : 464840 vulgar: NvOr203 134 215 . KQ414815.1 464594 464840 + 116 M 37 111 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464595 464840 116 + . gene_id 6 ; sequence NvOr203 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464595 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464595 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464595 464840 116 + . alignment_id 6 ; Query NvOr203 ; Align 464595 135 111 ; Align 464709 172 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 91 -> 216 Target range: 456822 -> 457411 92 : IleLysIleThrLeuAspThrIleGlnSerAspTrpLysSerLeuArgThrGluGluG : 111 |||::! ! !! !|||!.!||| ..!|||||||||||||||!:!!.! !|||| IleArgGluIleTyrAspAsnIleAlaAspAspTrpLysSerLeuLysAsnMetGluG 456823 : ATACGGGAGATTTACGACAATATCGCTGACGATTGGAAATCATTGAAGAACATGGAAG : 456880 112 : luAlaArgIleLeuAlaAsnTyrSerSerPheGlyLysLeuCysThrValGlyTrpAl : 130 || !...|||::: ...|||::!!:! !|||!:! !! !|||:!!!.! || luIleGluIleIleArgLysTyrAlaAsnGlyGlyArgArgPheThrLeuAlaIleAl 456881 : AAATCGagattattcgaaaatatgcGAACGGTGGCAGGAGATTTACACTTGCAATAGC : 456937 131 : a{T} >>>> Target Intron 1 >>>> {rp}IleCysThrThrThrIleIle : 138 |{ } 214 bp { } ! ! ! ! ! !:!: a{I}++ ++{le}SerThrTyrCysGlyAlaLeu 456938 : A{A}gt.........................ag{TT}TCTACTTATTGTGGCGCACTG : 457175 139 : CysTyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgProLeuAsnG : 158 ! ! ! !!!.! !.!! !|||.!.:!!||||||:!!:!: !|||||||||| ValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnG 457176 : GTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACG : 457235 159 : luThrArgProArgGlnLeuIleTyrMetValGluPhePheIleAspGluAspLysTy : 177 ||:!!|||||| !!:!!||| ! !! !.!|||!:!|||:!!||| ! ! ||||| luSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTy 457236 : AATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTA : 457292 178 : rPheTyrGluIleGlnIleHisSerTyrAlaThrThrLeuIleGlyPheIleProLeu : 196 |.!.:!! ! ||| |||! ! !.!! ! !||||||!.! !! ! !!||| rMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeu 457293 : TATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTA : 457349 197 : IleSerIleAspThrPheTyrAlaAlaSerValGlnHisAlaCysGlyMetPheAlaI : 216 ! !:!!! !!!::!!!!. ! !.!!!:!|||! !|||!.!||||||:!!||| !: ThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysL 457350 : ACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGC : 457409 217 : le : 216 !! eu 457410 : TT : 457411 vulgar: NvOr204 91 216 . KQ414815.1 456822 457411 + 165 M 39 117 S 0 1 5 0 2 I 0 210 3 0 2 S 1 2 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 456823 457411 165 + . gene_id 1 ; sequence NvOr204 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 456823 456940 . + . KQ414815.1 exonerate:protein2genome:local exon 456823 456940 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 456941 456942 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 456941 457154 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457153 457154 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457155 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457155 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 456823 457411 165 + . alignment_id 1 ; Query NvOr204 ; Align 456823 92 117 ; Align 457157 132 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 135 -> 217 Target range: 481992 -> 482238 136 : ThrIleIleCysTyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgP : 155 :!!:!::!: :!!|||! !! !.!.:!! !||||||||||||:!!||| !| SerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValP 481993 : TCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTC : 482050 156 : roLeuAsnGluThrArgProArgGlnLeuIleTyrMetValGluPhePheIleAspGl : 174 ||||||||||||||||| !!!.!|||!!! ! :!!|||!:!|||||||||:! roLeuAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGl 482051 : CTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCA : 482107 175 : uAspLysTyrPheTyrGluIleGlnIleHisSerTyrAlaThrThrLeuIleGlyPhe : 193 !.!.||||||! ! ||| !.!!|||..!!:: !:!! !|||:!!! ! nGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAla 482108 : GCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCA : 482164 194 : IleProLeuIleSerIleAspThrPheTyrAlaAlaSerValGlnHisAlaCysGlyM : 213 ! !:!!:!!.!!|||!!:|||!!. !!.! !!!!:!!:!!||||||....!!: ThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerL 482165 : ACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCT : 482224 214 : etPheAlaIleLeu : 217 !!|||.!!:!!:!! euPheThrLeuVal 482225 : TGTTCACCCTTGTA : 482238 vulgar: NvOr204 135 217 . KQ414815.1 481992 482238 + 137 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481993 482238 137 + . gene_id 2 ; sequence NvOr204 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481993 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 481993 482238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481993 482238 137 + . alignment_id 2 ; Query NvOr204 ; Align 481993 136 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 135 -> 217 Target range: 475527 -> 475773 136 : ThrIleIleCysTyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgP : 155 ||||||.!! ! :!!|||.!!! !|||:!! !! :!!||||||! !:!: !| ThrIlePheThrMetIleLeuLeuLeuPheSerSerLysIleLeuAspSerLeuLeuP 475528 : ACAATATTCACCATGATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTAC : 475585 156 : roLeuAsnGluThrArgProArgGlnLeuIleTyrMetValGluPhePheIleAspGl : 174 |||||||||||:!!||||||!!! !! !:!: :::|||:::||||||:::|| roLeuAsnGluSerArgProSerTrpSerLeuIleArgIleGluTyrPheIleAsnGl 475586 : CCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaatagaatatttcataaacGA : 475642 175 : uAspLysTyrPheTyrGluIleGlnIleHisSerTyrAlaThrThrLeuIleGlyPhe : 193 |.!.|||||||||||| !! ! !|||:!!..! !!.!|||! !|||:!: ! ! uGlnLysTyrPheTyrLeuSerValIleTyrGlnThrValThrIleLeuLeuPheGly 475643 : ACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGTAACGATCCTTCTGTTTGGT : 475699 194 : IleProLeuIleSerIleAspThrPheTyrAlaAlaSerValGlnHisAlaCysGlyM : 213 ! ! !!! !:!!:!!! !!!:.!!.!.!:!.!! !!!!:!!||||||..! ...: ThrThrTyrValAlaThrGluAlaIlePheThrMetTrpLeuGlnHisCysIleSerL 475700 : ACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGGTTGCAACATTGCATaagtt : 475759 214 : etPheAlaIleLeu : 217 ::||| |||::: euPheGluIleVal 475760 : tatttgaaattgtt : 475773 vulgar: NvOr204 135 217 . KQ414815.1 475527 475773 + 133 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475528 475773 133 + . gene_id 3 ; sequence NvOr204 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475528 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475528 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475528 475773 133 + . alignment_id 3 ; Query NvOr204 ; Align 475528 136 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 135 -> 216 Target range: 464594 -> 464840 136 : ThrIleIleCysTyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgP : 155 ..!|||:!:! ! !! !|||.!! ! ! !||| !:!!||||||:!!:!! !| ValIleLeuPheIleCysLeuLeuGluValLeuProAspIleLeuAspValValAlaP 464595 : GTTATACTGTTCATCTGTTTACTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGC : 464652 156 : roLeuAsnGluThrArgProArgGlnLeuIleTyrMetValGluPhePheIleAspGl : 174 |||||||||||:!!||| !!!.!|||! !:!! !! !.!|||||||||||| !!! roLeuAsnGluSerArgSerHisGlnTyrLeuIleThrAlaGluPhePheIleThrAs 464653 : CCCTCAATGAATCTCGTTCTCATCAATACTTAATTACCGCGGAATTTTTCATCACTGA : 464709 175 : uAspLysTyrPheTyrGluIleGln<->IleHisSerTyrAlaThrThrLeuIleGly : 192 :..!..! !||| :!! :!! !!!! !! !||| !:!!!!:||| pSerSerProAsnTyrIleValThrCysValGlyThrAspIleThrLeuIleMetGly 464710 : TAGTTCGCCGAATTATATCGTAACTTGTGTTGGTACGGATATTACTCTTATCATGGGA : 464766 193 : PheIleProLeuIleSerIleAspThrPheTyrAlaAlaSerValGlnHisAlaCysG : 212 !!! !!:!!|||:!! !!!:|||||| ! ! !! !:!!|||||| !|||! ValThrThrIleIleAlaSerGluThrPheThrPheLeuLeuLeuGlnHisIleCysA 464767 : GTCACGACAATAATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCG : 464826 213 : lyMetPheAlaIle : 216 .!|||||| !||| laMetPheLysIle 464827 : CAATGTTCAAAATC : 464840 vulgar: NvOr204 135 216 . KQ414815.1 464594 464840 + 113 M 47 141 G 0 3 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464595 464840 113 + . gene_id 4 ; sequence NvOr204 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464595 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464595 464840 . + . insertions 3 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464595 464840 113 + . alignment_id 4 ; Query NvOr204 ; Align 464595 136 141 ; Align 464739 183 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr199PSE Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 102 -> 174 Target range: 457180 -> 457396 103 : IleUnkIleIleProLeuLeuProLeuValLeuAspIleValZedSerLeuAsnGluS : 122 |||...! :!:! !|||!!!|||:!!:!!|||||||||||| !!|||||||||| IleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluS 457181 : ATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAAT : 457238 123 : erArgProLeuLysSerProPheThrCysGluPhePheValAspProAspLysTyrTy : 141 ||||||||! !:!!! ! !.!!|||...|||!:!||||||||| ! ! |||||| erArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMe 457239 : CACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATAT : 457295 142 : rPheThrIleLeuAlaGlnAsnTyrIleSerAlaLeuAlaSerProLeuProLeuVal : 160 ! !|||:!!|||!!.! ! !! !!! !||| !:!! !! ! !!|||..! tHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThr 457296 : GCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACA : 457352 161 : GlyMetAspLeuPhePheIleAsnCysCysAsnHisIleCys : 174 !.!! !!:! !!!..!!|||!.. ! |||:!!||| AlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCys 457353 : GCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGT : 457396 vulgar: NvOr199PSE 102 174 . KQ414815.1 457180 457396 + 116 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457181 457396 116 + . gene_id 1 ; sequence NvOr199PSE ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457181 457396 . + . KQ414815.1 exonerate:protein2genome:local exon 457181 457396 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457181 457396 116 + . alignment_id 1 ; Query NvOr199PSE ; Align 457181 103 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr201 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 173 Query range: 87 -> 216 Target range: 475301 -> 475773 88 : GlnHisLysIleLysSerIleLeuGluLysIleLysAsnAspTrpAsnGlnLeuSerG : 107 ||| :!!:!:|||..!:!!:!!|||||||||||| !!||||||! !:!!!:!! GlnIleGlnValLysGlnLeuMetGluLysIleLysTyrAspTrpMetThrIleAsnA 475302 : CAAATACAGGTGAAGCAGTTAATGGAGAAGATAAAGTACGATTGGATGACGATCAACG : 475359 108 : luLysLysGluIleGluMetLeuArgAspTyrSerAspThrGlyLysAlaPheAsnTh : 126 !::!! !|||:!!...:::|||:::::: :!! !!! !||||||!.!|||!..! spGluGlyGluLeuArgIleLeuLysAsnAsnAlaTyrArgGlyLysGlyPheThrIl 475360 : ACGAGGGAGAGCTTagaatcttgaaaaataacgCTTACAGAGGAAAAGGATTCACGAT : 475416 127 : rValTyrLeu{S} >>>> Target Intron 1 >>>> {er}LeuValThrVal : 134 !:!!!:! !{!} 85 bp { !}|||||| ! ! eIlePheAla{L}++ ++{eu}LeuValTyrPro 475417 : CATTTTCGCA{T}gt.........................ag{TA}CTGGTATACCCA : 475525 135 : IleLeuLeuSerTyrMetLeuIleProMetLeuProAlaAlaLeuAspLeuValAsnP : 154 ! !:!!!!!!!! !!:|||:!!! !.!.! ! !! ! !||||||! !:!! | ThrIlePheThrMetIleLeuLeuLeuPheSerSerLysIleLeuAspSerLeuLeuP 475526 : ACAATATTCACCATGATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTAC : 475585 155 : roLeuAsnGluSerArgProThrSerProLeuTyrLeuValGluLeuTyrIleAspGl : 173 ||||||||||||||||||||!:!!!! !!||| :::||| :::|||::::! roLeuAsnGluSerArgProSerTrpSerLeuIleArgIleGluTyrPheIleAsnGl 475586 : CCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaatagaatatttcataaacGA : 475642 174 : nAspLysTyrPheTyrSerValLeuThrHisAlaTyrIleThrSerLeuAlaGlyIle : 192 !.!.|||||||||||| ! !:!!! !:!! ! !:!!|||! !||| ! ! ! uGlnLysTyrPheTyrLeuSerValIleTyrGlnThrValThrIleLeuLeuPheGly 475643 : ACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGTAACGATCCTTCTGTTTGGT : 475699 193 : LeuProLeuPheAlaIleAspSerLeuPheSerSerCysAlaHisHisAlaCysGlyM : 212 ! !!! ! ! |||! !!!::!!:!!|||!!!! !!! !!!.|||..! ...: ThrThrTyrValAlaThrGluAlaIlePheThrMetTrpLeuGlnHisCysIleSerL 475700 : ACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGGTTGCAACATTGCATaagtt : 475759 213 : etIleGluIleLeu : 216 ::...||||||::: euPheGluIleVal 475760 : tatttgaaattgtt : 475773 vulgar: NvOr201 87 216 . KQ414815.1 475301 475773 + 173 M 42 126 S 0 1 5 0 2 I 0 81 3 0 2 S 1 2 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475302 475773 173 + . gene_id 1 ; sequence NvOr201 ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 475302 475428 . + . KQ414815.1 exonerate:protein2genome:local exon 475302 475428 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 475429 475430 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 475429 475513 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 475512 475513 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 475514 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475514 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475302 475773 173 + . alignment_id 1 ; Query NvOr201 ; Align 475302 88 126 ; Align 475516 131 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr201 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 141 -> 215 Target range: 457189 -> 457411 142 : IleProMetLeuProAlaAlaLeuAspLeuValAsnProLeuAsnGluSerArgProT : 161 :!:! !:!:!!!||| ! !||||||:!!||| !||||||||||||||||||||| LeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgProC 457190 : TTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCCCCT : 457247 162 : hrSerProLeuTyrLeuValGluLeuTyrIleAspGlnAspLysTyrPheTyrSerVa : 180 !..! !! ! ! !!.!|||! !!:!:!!|||..! ! ||||||.!.:!!! !:! ysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMetHisTyrIl 457248 : GTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATAT : 457304 181 : lLeuThrHisAlaTyrIleThrSerLeuAlaGlyIleLeuProLeuPheAlaIleAsp : 199 !:!!.!!||| ! !! ! !||| !!.! ! ! !!||| |||! !!!: eIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGlu 457305 : CATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAA : 457361 200 : SerLeuPheSerSerCysAlaHisHisAlaCysGlyMetIleGluIle : 215 ||||||.!!! !!!! !!.!! |||!.!||||||:!!.!!:!!:!! SerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457362 : TCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: NvOr201 141 215 . KQ414815.1 457189 457411 + 120 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457190 457411 120 + . gene_id 2 ; sequence NvOr201 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457190 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457190 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457190 457411 120 + . alignment_id 2 ; Query NvOr201 ; Align 457190 142 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr201 Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 135 -> 217 Target range: 448055 -> 448301 136 : LeuLeuSerTyrMetLeuIleProMetLeuProAlaAlaLeuAspLeuValAsnProL : 155 |||:!!|||!:!! |||:!! !.!.:!! ! ||||||::::::! |||: LeuIleSerPheThrLeuValGluPheValValHisPheLeuAspIleLeuMetProM 448056 : TTAATTAGCTTTACCTTGGTTGAGTTCGTGGTAcattttctcgatattttaATGCCAA : 448113 156 : euAsnGluSerArgProThrSerProLeuTyrLeuValGluLeuTyrIleAspGlnAs : 174 !!|||! !|||! !! ! !..!! !! !!:!|||:!!:!!! !!:! !|||||||| etAsnValSerThrArgHisGluLeuProPheLeuIleGlnCysPheCysAspGlnAs 448114 : TGAACGTATCTACACGGCACGAGCTACCCTTCCTAATTCAATGTTTCTGTGATCAAGA : 448170 175 : pLysTyrPheTyrSerValLeuThrHisAlaTyrIleThrSerLeuAlaGlyIleLeu : 193 ||||!:!|||:!!! !:!!|||..! ! ! !:!! !!!!:!! !||| ! ! pLysPhePheHisTyrIleLeuValPheLeuIleValLeuThrIleLeuGlyGlySer 448171 : TAAATTCTTCCACTATATATTAGTTTTCTTGATCGTTCTCACTATTTTGGGTGGAAGT : 448227 194 : ProLeuPheAlaIleAspSerLeuPheSerSerCysAlaHisHisAlaCysGlyMetI : 213 !:!!!!.|||! ! !!! !!:!! !! !! !::!!!.|||..!||||||:!!. ValValLeuAlaThrThrThrThrTyrLeuIlePheSerGlnHisCysCysGlyLeuP 448228 : GTGGTATTAGCCACTACAACGACTTACTTGATATTCAGTCAACATTGTTGTGGATTGT : 448287 214 : leGluIleLeuGly : 217 !!:!!||| !||| heLysIleAlaGly 448288 : TCAAAATTGCAGGG : 448301 vulgar: NvOr201 135 217 . KQ414815.1 448055 448301 + 116 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 448056 448301 116 + . gene_id 3 ; sequence NvOr201 ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 448056 448301 . + . KQ414815.1 exonerate:protein2genome:local exon 448056 448301 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 448056 448301 116 + . alignment_id 3 ; Query NvOr201 ; Align 448056 136 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 175 Query range: 135 -> 218 Target range: 1224276 -> 1224024 136 : ThrIleIleCysTyrLeuLeuPheProPheThrProPheValLeuAspLeuIleAr : 154 ..!:!::!! |||:!! !||||||!!.! ! ! |||||||||:!!:!! ValLeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAspValValAl 1224276 : GTTCTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGC : 1224222 155 : gProLeuAsnGluThrArgProArgGlnLeuIleTyrMetValGluPhe<->PheI : 172 !||||||||||||||||||||||||::!|||:!: ! |||...!:! |||| aProLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheI 1224221 : GCCGTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCA : 1224165 173 : leAspGluAspLysTyrPheTyrGluIleGlnIleHisSerTyrAlaThrThrLeu : 190 |||||||| !!:!!:!!||||||...:!:.!..!!||| !|||.!!!:!..!:!! leAspGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIle 1224164 : TAGACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATT : 1224111 191 : IleGlyPheIleProLeuIleSerIleAspThrPheTyrAlaAlaSerValGlnHi : 209 ! !! !!: !:!!|||:!!:!:|||! !!!.||| !.!!! !:!! || SerCysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHi 1224110 : TCCTGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCA : 1224054 210 : sAlaCysGlyMetPheAlaIleLeuGly : 218 | !||||||:!!||||||:!:! !||| sLeuCysGlyLeuPheAlaValCysGly 1224053 : CCTTTGCGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: NvOr204 135 218 . KQ414851.1 1224276 1224024 - 175 M 35 105 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224276 175 - . gene_id 1 ; sequence NvOr204 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224276 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224276 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224276 175 - . alignment_id 1 ; Query NvOr204 ; Align 1224277 136 105 ; Align 1224169 171 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 168 Query range: 137 -> 218 Target range: 1243842 -> 1243599 138 : IleCysTyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgProLe : 156 ||| !:!:!!|||||||||!!.! !||| :!!||||||:!!:!! !||||| IleIlePheValLeuPheProLeuIleProProIleLeuAspValValSerProLe 1243842 : ATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCT : 1243788 157 : uAsnGluThrArgProArgGlnLeuIleTyrMetValGluPhePheIleAspGluA : 175 ||||||||||||| !!||| ! ::: :::::::::.!..!!||| : uAsnGluThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspMetG 1243787 : TAATGAGACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACAtgg : 1243731 176 : spLysTyrPheTyrGluIleGlnIleHisSerTyrAlaThrThrLeuIleGlyPhe : 193 ::||| ||||||...::: :!!:!!!!! ! ! !:!!!!!!!: !.!. luLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMet 1243730 : agaagaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATG : 1243677 194 : IleProLeuIleSerIleAspThrPheTyrAlaAlaSerValGlnHisAlaCysGl : 212 !!: !:!!|||!!!||||||.!!!!.|||!.!!.!! !:!!!!.|||.!!||||| MetValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGl 1243676 : ATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGG : 1243620 213 : yMetPheAlaIleLeuGly : 218 |:!:||||||:!!! !||| yLeuPheAlaValCysGly 1243619 : CTTATTCGCTGTTTGCGGG : 1243600 vulgar: NvOr204 137 218 . KQ414851.1 1243842 1243599 - 168 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243842 168 - . gene_id 2 ; sequence NvOr204 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243842 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243842 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243842 168 - . alignment_id 2 ; Query NvOr204 ; Align 1243843 138 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 150 Query range: 139 -> 218 Target range: 1229464 -> 1229224 140 : TyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgProLeuAsnGl : 158 !:!|||||| !!|||!!. ! ! !.!||||||:!!:!!! !|||! !||||| PheLeuLeuValProLeuPheGlyProAlaLeuAspIleValLeuProSerAsnGl 1229464 : TTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCGTCCTTCCATCAAATGA : 1229410 159 : uThrArgProArgGlnLeuIleTyrMetValGluPhePheIle<->AspGluAspL : 176 ||||||||||||||||! !:!:!:!! |||.!.!:!.!.||| |||:!!! uThrArgProArgGlnGlnLeuPheArgValAsnTyrIleIlePheAspGlnAlaA 1229409 : AACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAATTTTCGACCAAGCAG : 1229353 177 : ysTyrPheTyrGluIleGlnIleHisSerTyrAlaThrThrLeuIleGlyPheIle : 194 ! ||||||!:! ! :!: ! |||!!.! !!:! ! !|||:!!:!! ! ! !!: spTyrPhePheTyrValTyrIleGlnLeuPheTrpCysThrIleValLeuValMet 1229352 : ACTATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACAATCGTTCTTGTAATG : 1229299 195 : ProLeuIleSerIleAspThrPheTyrAlaAlaSerValGlnHisAlaCysGlyMe : 213 !!:!!|||!!!:!!|||:!!!!.||| ! !! !:!! ! |||||| !!||||| AlaIleIleThrValAspSerLeuTyrMetIleIleIleTyrHisAlaSerGlyMe 1229298 : GCCATTATCACCGTAGATTCATTGTACATGATCATAATTTACCATGCCAGCGGAAT : 1229242 214 : tPheAlaIleLeuGly : 218 ||||||||||! !||| tPheAlaIleCysGly 1229241 : GTTCGCTATATGCGGG : 1229225 vulgar: NvOr204 139 218 . KQ414851.1 1229464 1229224 - 150 M 33 99 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229464 150 - . gene_id 3 ; sequence NvOr204 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229225 1229464 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229464 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229464 150 - . alignment_id 3 ; Query NvOr204 ; Align 1229465 140 99 ; Align 1229363 173 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 138 Query range: 136 -> 218 Target range: 1234308 -> 1234059 137 : IleIleCysTyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgPr : 155 !!::!! !!:!|||||| !!|||!!...! ! !!||||||:!!:!!! !|| MetValValPheLeuLeuValProLeuValPheProPheLeuAspValValLeuPr 1234308 : ATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGTCGTCCTTCC : 1234254 156 : oLeuAsnGluThrArgProArgGlnLeuIleTyrMetValGluPhe<->PheIleA : 173 |||||||||||||||||||||||||! ! !!:!! |||.!.!:! !:!.!!| oLeuAsnGluThrArgProArgGlnGlnGlyPheArgValAsnTyrLeuTyrPheA 1234253 : GTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTATATTTCG : 1234197 174 : spGluAspLysTyrPheTyrGluIleGlnIleHisSerTyrAlaThrThrLeuIle : 191 |||||! ! ||||||!:!...:!: ! .!!!!.! ! ! ! !.!!:!!:!! spGluAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaValVal 1234196 : ACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAGTCGTT : 1234143 192 : GlyPheIleProLeuIleSerIleAspThrPheTyrAlaAlaSerValGlnHisAl : 210 ! ! !!!!: !:!!|||!!!:!!|||:!!!!.||| ! !! !:!!!!.||||| ValValMetIleIleIleThrValAspSerLeuTyrMetIleIleIleHisHisAl 1234142 : GTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGATAATAATTCACCATGC : 1234086 211 : aCysGlyMetPheAlaIleLeuGly : 218 | !!||||||||||||:!:! !||| aSerGlyMetPheAlaValCysGly 1234085 : CAGCGGAATGTTCGCCGTGTGCGGG : 1234060 vulgar: NvOr204 136 218 . KQ414851.1 1234308 1234059 - 138 M 34 102 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234308 138 - . gene_id 4 ; sequence NvOr204 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234308 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234308 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234308 138 - . alignment_id 4 ; Query NvOr204 ; Align 1234309 137 102 ; Align 1234204 171 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 131 -> 218 Target range: 1240085 -> 1239821 132 : IleCysThrThrThrIleIleCysTyrLeuLeuPheProPheThrProPheValLe : 150 :!!! !:!:...:::... :::|||:!! !!|||... ||| :::|| ValLeuPheSerValLeuPheIlePheLeuValValProIlePheProProLeuLe 1240085 : GTTTTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcctcctcttct : 1240031 151 : uAspLeuIleArgProLeuAsnGluThrArgProArgGlnLeuIleTyrMetValG : 169 ||||:!!:!!!:!|||||||||||||||||| !!|||||| |||::: |||. uAspIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIlePheLysValA 1240030 : ggACATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatattcaaagtta : 1239974 170 : luPhe<->PheIleAspGluAspLysTyrPheTyrGluIleGlnIleHisSerTyr : 186 ..!:! .!!||||||..!|||:!! ! ! ! ! ! .!!|||! !! ! snTyrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPheHisLeuSer 1239973 : aTTACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTTCACTTGTCT : 1239920 187 : AlaThrThrLeuIleGlyPheIleProLeuIleSerIleAspThrPheTyrAlaAl : 205 !||||||:!!! ! ! ||| !!:!!:!!||| !!!: !.!.|||!.! TrpThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIleTyrValLe 1239919 : TGGACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGTCCT : 1239863 206 : aSerValGlnHisAlaCysGlyMetPheAlaIleLeuGly : 218 ! !:!!!!.|||.!! !!|||:!!||||||:!: !||| uLeuIleHisHisThrSerGlyLeuPheAlaValAlaGly 1239862 : TCTTATTCATCATACCAGCGGTCTGTTTGCTGTGGCTGgg : 1239822 vulgar: NvOr204 131 218 . KQ414851.1 1240085 1239821 - 130 M 39 117 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240085 130 - . gene_id 5 ; sequence NvOr204 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239822 1240085 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240085 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240085 130 - . alignment_id 5 ; Query NvOr204 ; Align 1240086 132 117 ; Align 1239966 171 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr198 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 157 Query range: 136 -> 220 Target range: 1224279 -> 1224024 137 : ValValLeuLeuSerTyrMetLeuLeuProMetLeuProAlaValLeuAspLeuIl : 155 :!!||||||||| !|||||| !!!!|||:!!:!! ! !!|||||||||:!!:! IleValLeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAspValVa 1224279 : ATAGTTCTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGT : 1224225 156 : eAsnProLeuAsnGluSerArgProLysSerProLeuTyrMetValGluPhe<->T : 173 ! ||||||||||||!!!||||||:::!!!! !||| ! |||...!:! ! lAlaProLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIleP 1224224 : TGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATAT : 1224168 174 : yrIleAspGlnAspLysTyrPheTyrSerValLeuThrHisAlaTyrIleThrSer : 191 :!||||||:!! !!:!!:!!|||||||||||| ! !||| !|||! !!:! ! heIleAspGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerVal 1224167 : TCATAGACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTG : 1224114 192 : LeuAlaGlyValLeuProLeuPheAlaThrAspLeuLeuPheSerAsnCysAlaHi : 210 :!!:!! !!! !:!! !:!!.!!|||..!|||:!!|||!:!! !!.! ! ! IleSerCysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePh 1224113 : ATTTCCTGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTT : 1224057 211 : sHisAlaCysGlyIleIleLysIleLeuGly : 220 !||| !||||||:!:.!! !:!:! !||| eHisLeuCysGlyLeuPheAlaValCysGly 1224056 : TCACCTTTGCGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: NvOr198 136 220 . KQ414851.1 1224279 1224024 - 157 M 36 108 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224279 157 - . gene_id 1 ; sequence NvOr198 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224279 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224279 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224279 157 - . alignment_id 1 ; Query NvOr198 ; Align 1224280 137 108 ; Align 1224169 173 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr198 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 144 Query range: 132 -> 220 Target range: 1243863 -> 1243599 133 : GlyLeuValAlaValValLeuLeuSerTyrMetLeuLeuProMetLeuProAlaVa : 151 ||| !:!! ! ! !!! !:!!! !!:!:!:|||!!!|||:!::!!||| !!:! GlyThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIl 1243863 : GGTACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAAT : 1243809 152 : lLeuAspLeuIleAsnProLeuAsnGluSerArgProLysSerProLeuTyrMetV : 170 !||||||:!!:!!:::||||||||||||!!!||| !!::!! ! ::: : eLeuAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysL 1243808 : ATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaat : 1243752 171 : alGluPheTyrIleAspGlnAspLysTyrPheTyrSerValLeuThrHisAlaTyr : 188 :::::::: .!!|||...:::||| |||||||||::: ..!:!!.!! ! euGlnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGly 1243751 : tgcaataccTGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGC : 1243698 189 : IleThrSerLeuAlaGlyValLeuProLeuPheAlaThrAspLeuLeuPheSerAs : 207 !|||!!! ! !:!!:!! !:!!.!!.!!! !||| !|||!:! ! TrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValVa 1243697 : TGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGT : 1243641 208 : nCysAlaHisHisAlaCysGlyIleIleLysIleLeuGly : 220 ! !||||||.!!||||||:!!.!! :!!! !||| lIleIleHisHisThrCysGlyLeuPheAlaValCysGly 1243640 : AATCATTCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: NvOr198 132 220 . KQ414851.1 1243863 1243599 - 144 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243863 144 - . gene_id 2 ; sequence NvOr198 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243863 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243863 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243863 144 - . alignment_id 2 ; Query NvOr198 ; Align 1243864 133 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr198 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 138 -> 220 Target range: 1234308 -> 1234059 139 : LeuLeuSerTyrMetLeuLeuProMetLeuProAlaValLeuAspLeuIleAsnPr : 157 :!!:!! !!:!:!!|||:!!|||:!::!! ! !! !!||||||:!!:!! !|| MetValValPheLeuLeuValProLeuValPheProPheLeuAspValValLeuPr 1234308 : ATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGTCGTCCTTCC : 1234254 158 : oLeuAsnGluSerArgProLysSerProLeuTyrMetValGluPhe<->TyrIleA : 175 ||||||||||!!!||||||::!..!! ! !!:!! |||.!.!:! |||.!!| oLeuAsnGluThrArgProArgGlnGlnGlyPheArgValAsnTyrLeuTyrPheA 1234253 : GTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTATATTTCG : 1234197 176 : spGlnAspLysTyrPheTyrSerValLeuThrHisAlaTyrIleThrSerLeuAla : 193 ||:!!! ! ||||||!:!||||||! ! !!!. ! ! !:!!:!!!.! spGluAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaValVal 1234196 : ACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAGTCGTT : 1234143 194 : GlyValLeuProLeuPheAlaThrAspLeuLeuPheSerAsnCysAlaHisHisAl : 212 ! !|||:!! !:!!.!!.!!..!|||! !|||!:!! !! !|||||||| ValValMetIleIleIleThrValAspSerLeuTyrMetIleIleIleHisHisAl 1234142 : GTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGATAATAATTCACCATGC : 1234086 213 : aCysGlyIleIleLysIleLeuGly : 220 | !!|||!!:.!! :!:! !||| aSerGlyMetPheAlaValCysGly 1234085 : CAGCGGAATGTTCGCCGTGTGCGGG : 1234060 vulgar: NvOr198 138 220 . KQ414851.1 1234308 1234059 - 116 M 34 102 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234308 116 - . gene_id 3 ; sequence NvOr198 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234308 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234308 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234308 116 - . alignment_id 3 ; Query NvOr198 ; Align 1234309 139 102 ; Align 1234204 173 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr198 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 137 -> 220 Target range: 1240073 -> 1239821 138 : ValLeuLeuSerTyrMetLeuLeuProMetLeuProAlaValLeuAspLeuIleAs : 156 ||||||... :::::::!!:!!|||:::...||| :::||||||:!!:!!!! ValLeuPheIlePheLeuValValProIlePheProProLeuLeuAspIleLeuLy 1240073 : gttttgttcatttttctggTGGTTCcgatttttcctcctcttctggACATTTTAAA : 1240019 157 : nProLeuAsnGluSerArgProLysSerProLeuTyrMetValGluPhe<->TyrI : 174 .||||||||||||!!!||| !!:::... :::::: |||...!:! !| sProLeuAsnGluThrArgAlaArgGlnLysIlePheLysValAsnTyrLeuIleI 1240018 : ACCTTTAAACGAAACCCGAGCACgccagaaaatattcaaagttaaTTACCTGATCA : 1239962 175 : leAspGlnAspLysTyrPheTyrSerValLeuThrHisAlaTyrIleThrSerLeu : 192 |||||::!|||:!! ! ! ! !..!! ! !||| !! ! |||!!!:!! leAspArgAspGluGlnAlaLeuIleThrTyrPheHisLeuSerTrpThrThrIle 1239961 : TTGACAGGGATGAACAAGCTCTGATCACATATTTTCACTTGTCTTGGACAACTATC : 1239908 193 : AlaGlyValLeuProLeuPheAlaThrAspLeuLeuPheSerAsnCysAlaHisHi : 211 .!! !! !:!! !!:!!.!!::!:!!!!:|||:!!!:! ! ! ! !||||| ThrLeuGlyIleSerValLeuSerSerGluLeuIleTyrValLeuLeuIleHisHi 1239907 : ACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGTCCTTCTTATTCATCA : 1239851 212 : sAlaCysGlyIleIleLysIleLeuGly : 220 |.!! !!|||:!:.!! :!: !||| sThrSerGlyLeuPheAlaValAlaGly 1239850 : TACCAGCGGTCTGTTTGCTGTGGCTGgg : 1239822 vulgar: NvOr198 137 220 . KQ414851.1 1240073 1239821 - 112 M 35 105 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240073 112 - . gene_id 4 ; sequence NvOr198 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239822 1240073 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240073 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240073 112 - . alignment_id 4 ; Query NvOr198 ; Align 1240074 138 105 ; Align 1239966 173 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr211 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 159 Query range: 146 -> 225 Target range: 1243836 -> 1243599 147 : TyrSerLeuGluProLeuValProGlnIleLeuAspLysLeuSerProLeuAsnGl : 165 !:! !||| ||||||:!!|||! !||||||||| :!!|||||||||||||| PheValLeuPheProLeuIleProProIleLeuAspValValSerProLeuAsnGl 1243836 : TTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGA : 1243782 166 : uSerArgProIleLysThrPheLeuGluValGluTyrLeuValAspHisArgArgT : 184 |!!!||| !! ! ! ::::::::::::|||||| !!||| ...::: uThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspMetGluLysA 1243781 : GACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACAtggagaaga : 1243725 185 : yrTyrThrAlaIleTyrLeuHisAsnMetGlnAlaAlaCysTrpValIleLeuThr : 202 ::: ::::::|||:!!:!!!.! !..!:!!! ! !..!!!::!!..! snPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMetVal 1243724 : atttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTT : 1243671 203 : ValLeuAlaIleAspAlaTyrPheValMetIleValGlnHisAlaCysSerMetPh : 221 :!!:!!.!!|||||||||! !:!|||:!:|||:!!!!.|||.!!|||.!!:!:|| IleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGlyLeuPh 1243670 : ATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTTATT : 1243614 222 : eAlaValLeuGly : 225 |||||||! !||| eAlaValCysGly 1243613 : CGCTGTTTGCGGG : 1243600 vulgar: NvOr211 146 225 . KQ414851.1 1243836 1243599 - 159 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243836 159 - . gene_id 1 ; sequence NvOr211 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243836 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243836 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243836 159 - . alignment_id 1 ; Query NvOr211 ; Align 1243837 147 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr211 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 137 Query range: 132 -> 225 Target range: 1234341 -> 1234059 133 : IleIleGlyTyrThrLeuCysIleIleGlySerLeuAlaThrTyrSerLeuGluPr : 151 |||:!: !!:!:!! ! :!!:!:..!! !:!!!.!..!!:! !|||! || IleValPhePheSerAspThrLeuLeuSerPheMetValValPheLeuLeuValPr 1234341 : ATCGTGTTCTTCTCAGATACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCC : 1234287 152 : oLeuValProGlnIleLeuAspLysLeuSerProLeuAsnGluSerArgProIleL : 170 ||||||| !! !.!!|||||| :!! !||||||||||||!!!|||||| !: oLeuValPheProPheLeuAspValValLeuProLeuAsnGluThrArgProArgG 1234286 : ATTAGTTTTTCCATTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGAC : 1234230 171 : ysThrPheLeuGluValGluTyrLeu<->ValAspHisArgArgTyrTyrThrAla : 187 !! ! !!!..!|||.!.|||||| !!|||.!. ! !|||!:! !::! lnGlnGlyPheArgValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSer 1234229 : AGCAAGGATTCAGAGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGC : 1234176 188 : IleTyrLeuHisAsnMetGlnAlaAlaCysTrpValIleLeuThrValLeuAlaIl : 206 :!:|||!!!!!. !!.!||| ! |||:!!:!!! !:!!:!!.!!:! ValTyrPheGlnLeuAlaTrpGlyAlaValValValValMetIleIleIleThrVa 1234175 : GTGTACTTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGT : 1234119 207 : eAspAlaTyrPheValMetIleValGlnHisAlaCysSerMetPheAlaValLeuG : 225 !|||:!!! !:!:!!!!:|||:!!!!.|||||| !!.!!||||||||||||! !| lAspSerLeuTyrMetIleIleIleHisHisAlaSerGlyMetPheAlaValCysG 1234118 : AGACTCGTTGTACATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTGTGCG : 1234062 226 : ly : 225 || ly 1234061 : GG : 1234060 vulgar: NvOr211 132 225 . KQ414851.1 1234341 1234059 - 137 M 46 138 G 0 3 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234341 137 - . gene_id 2 ; sequence NvOr211 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234341 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234341 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234341 137 - . alignment_id 2 ; Query NvOr211 ; Align 1234342 133 138 ; Align 1234201 179 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr211 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 129 Query range: 143 -> 225 Target range: 1224273 -> 1224024 144 : LeuAlaThrTyrSerLeuGluProLeuValProGlnIleLeuAspLysLeuSerPr : 162 ||| !..!|||! ! ! ||||||:!! !! !:!!|||||| :!!:!!|| LeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAspValValAlaPr 1224273 : CTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCC : 1224219 163 : oLeuAsnGluSerArgProIleLysThrPheLeuGluValGluTyrLeu<->ValA : 180 ||||||||||!!!|||||| !!:! !!!.||| !|||...|||:!! :!!| oLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleA 1224218 : GTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAG : 1224162 181 : spHisArgArgTyrTyrThrAlaIleTyrLeuHisAsnMetGlnAlaAlaCysTrp : 198 ||.!. !..!:!!!:! !::!:!: !!!!!||| ::!!.! !! spGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSer 1224161 : ACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCC : 1224108 199 : ValIleLeuThrValLeuAlaIleAspAlaTyrPheValMetIleValGlnHisAl : 217 ! :!!! !:!!:!!|||:!:||| !! !:!:!!! |||:!! ||| CysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLe 1224107 : TGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCT : 1224051 218 : aCysSerMetPheAlaValLeuGly : 225 !|||.!!:!!|||||||||! !||| uCysGlyLeuPheAlaValCysGly 1224050 : TTGCGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: NvOr211 143 225 . KQ414851.1 1224273 1224024 - 129 M 35 105 G 0 3 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224273 129 - . gene_id 3 ; sequence NvOr211 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224273 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224273 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224273 129 - . alignment_id 3 ; Query NvOr211 ; Align 1224274 144 105 ; Align 1224166 179 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr211 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 136 -> 225 Target range: 1240091 -> 1239821 137 : ThrLeuCysIleIleGlySerLeuAlaThrTyrSerLeuGluProLeuValProGl : 155 :!!:!! !:!!.!!... ||| ::: :!!! |||::: ||| SerValValLeuPheSerValLeuPheIlePheLeuValValProIlePheProPr 1240091 : TCAGTCGTTTTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcctcc : 1240037 156 : nIleLeuAspLysLeuSerProLeuAsnGluSerArgProIleLysThrPheLeuG : 174 :::||||||! |||!.!||||||||||||!!!||| !! ::: ......: oLeuLeuAspIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIlePheL 1240036 : tcttctggACATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatattca : 1239980 175 : luValGluTyrLeuValAspHisArgArgTyrTyrThrAlaIle<->TyrLeuHis : 191 ::|||...||||||:!! ! !!||| ! ! ! .!! !||| |||!!!||| ysValAsnTyrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPheHis 1239979 : aagttaaTTACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTTCAC : 1239926 192 : AsnMetGlnAlaAlaCysTrpValIleLeuThrValLeuAlaIleAspAlaTyrPh : 210 !.!!.!! ! :!! :!!:!!||||||::! !!!: ! !: LeuSerTrpThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIleTy 1239925 : TTGTCTTGGACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATA : 1239869 211 : eValMetIleValGlnHisAlaCysSerMetPheAlaValLeuGly : 225 !|||:!::!!:!!!!.|||.!! !!.!!:!!||||||||| !||| rValLeuLeuIleHisHisThrSerGlyLeuPheAlaValAlaGly 1239868 : CGTCCTTCTTATTCATCATACCAGCGGTCTGTTTGCTGTGGCTGgg : 1239822 vulgar: NvOr211 136 225 . KQ414851.1 1240091 1239821 - 108 M 52 156 G 0 3 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240091 108 - . gene_id 4 ; sequence NvOr211 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239822 1240091 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240091 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240091 108 - . alignment_id 4 ; Query NvOr211 ; Align 1240092 137 156 ; Align 1239933 189 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr211 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 336 -> 374 Target range: 1222493 -> 1222379 337 : TrpTyrGluLeuProAlaGlySerArgArgLeuLeuLeuLeuMetLeuLeuArgSe : 355 |||||||||||||||!.! !.!!!:!!:!|||:!!! ! !|||! !:!!||||| TrpTyrGluLeuProValLysGlyGlnLysLeuIleTyrThrMetGlnMetArgSe 1222493 : TGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTACACGATGCAAATGAGGTC : 1222439 356 : rSerArgAlaCysHisIleThrAlaGlyGlyMetPheProMetAsnPheGluThrT : 374 |! !||| !!||| :!!||||||||||||:!! ! !||||||.!!|||!:!! rIleArgProCysIleLeuThrAlaGlyGlyValHisGluMetAsnIleGluSerP 1222438 : CATACGGCCATGTATATTAACAGCAGGAGGAGTGCATGAGATGAACATCGAGAGTT : 1222382 375 : yr : 374 :! he 1222381 : TC : 1222380 vulgar: NvOr211 336 374 . KQ414851.1 1222493 1222379 - 103 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222380 1222493 103 - . gene_id 5 ; sequence NvOr211 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1222380 1222493 . - . KQ414851.1 exonerate:protein2genome:local exon 1222380 1222493 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222380 1222493 103 - . alignment_id 5 ; Query NvOr211 ; Align 1222494 337 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr201 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 149 Query range: 126 -> 217 Target range: 1224300 -> 1224024 127 : ValTyrLeuSerLeuValThrValIleLeuLeuSerTyrMetLeuIleProMetLe : 145 :::::: ... !:!! !:!!:!!|||||| !|||||| !.!!|||:!!:! IlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLeuIl 1224300 : attttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGAT : 1224246 146 : uProAlaAlaLeuAspLeuValAsnProLeuAsnGluSerArgProThrSerProL : 164 ! ! !!!.!||||||:!!||| ||||||||||||!!!|||||| !!!!! !| eAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLeuL 1224245 : AAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTT : 1224189 165 : euTyrLeuValGlu<->LeuTyrIleAspGlnAspLysTyrPheTyrSerValLeu : 181 || !! !|||... :!!!:!||||||:!! !!:!!:!!|||||||||||| ! euLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValAsn 1224188 : TGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAAT : 1224135 182 : ThrHisAlaTyrIleThrSerLeuAlaGlyIleLeuProLeuPheAlaIleAspSe : 200 !||| !|||! !!:! !:!!:!! !! :!! !:!!.!!|||:!:|||! PheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAspMe 1224134 : TTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATAT : 1224078 201 : rLeuPheSerSerCysAlaHisHisAlaCysGlyMetIleGluIleLeuGly : 217 !|||!:!! !!!! ! ! !||| !||||||:!!.!!! !:!:! !||| tLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaValCysGly 1224077 : GTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: NvOr201 126 217 . KQ414851.1 1224300 1224024 - 149 M 42 126 G 0 3 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224300 149 - . gene_id 1 ; sequence NvOr201 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224300 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224300 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224300 149 - . alignment_id 1 ; Query NvOr201 ; Align 1224301 127 126 ; Align 1224172 169 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr201 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 141 Query range: 136 -> 217 Target range: 1243842 -> 1243599 137 : LeuSerTyrMetLeuIleProMetLeuProAlaAlaLeuAspLeuValAsnProLe : 155 :!!! !!:!:!:|||.!!|||:!::!!||| !! !||||||:!!|||:::||||| IleIlePheValLeuPheProLeuIleProProIleLeuAspValValSerProLe 1243842 : ATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCT : 1243788 156 : uAsnGluSerArgProThrSerProLeuTyrLeuValGluLeuTyrIleAspGlnA : 174 |||||||!!!||| !! !! ! ::: :::::: .!!|||...: uAsnGluThrArgSerArgIleGluValIleLysLeuGlnTyrLeuPheAspMetG 1243787 : TAATGAGACTCGATCTCGGATAGaagtaataaaattgcaataccTGTTCGACAtgg : 1243731 175 : spLysTyrPheTyrSerValLeuThrHisAlaTyrIleThrSerLeuAlaGlyIle : 192 ::||| |||||||||::: ..!:!!.!! ! !|||!!! ! !!!: luLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMet 1243730 : agaagaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATG : 1243677 193 : LeuProLeuPheAlaIleAspSerLeuPheSerSerCysAlaHisHisAlaCysGl : 211 :!! !:!!.!!.!!||||||:!!|||!:! ! ! ! !||||||.!!||||| MetValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCysGl 1243676 : ATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGG : 1243620 212 : yMetIleGluIleLeuGly : 217 |:!:.!!! :!!! !||| yLeuPheAlaValCysGly 1243619 : CTTATTCGCTGTTTGCGGG : 1243600 vulgar: NvOr201 136 217 . KQ414851.1 1243842 1243599 - 141 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243842 141 - . gene_id 2 ; sequence NvOr201 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243842 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243842 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243842 141 - . alignment_id 2 ; Query NvOr201 ; Align 1243843 137 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr201 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 134 -> 217 Target range: 1234311 -> 1234059 135 : IleLeuLeuSerTyrMetLeuIleProMetLeuProAlaAlaLeuAspLeuValAs : 153 .!!:!!:!! !!:!:!!|||:!!|||:!::!! ! !! !||||||:!!||| PheMetValValPheLeuLeuValProLeuValPheProPheLeuAspValValLe 1234311 : TTCATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGTCGTCCT : 1234257 154 : nProLeuAsnGluSerArgProThrSerProLeuTyrLeuValGlu<->LeuTyrI : 171 !||||||||||||!!!|||||| !..!! ! !!:! !|||.!. ||||||. uProLeuAsnGluThrArgProArgGlnGlnGlyPheArgValAsnTyrLeuTyrP 1234256 : TCCGTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTATATT : 1234200 172 : leAspGlnAspLysTyrPheTyrSerValLeuThrHisAlaTyrIleThrSerLeu : 189 !!|||:!!! ! ||||||!:!||||||! ! !!!. ! ! !:!!:!! heAspGluAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaVal 1234199 : TCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAGTC : 1234146 190 : AlaGlyIleLeuProLeuPheAlaIleAspSerLeuPheSerSerCysAlaHisHi : 208 !.!! !:!!:!! !:!!.!!.!!:!!|||||||||!:!! !! ! !||||| ValValValMetIleIleIleThrValAspSerLeuTyrMetIleIleIleHisHi 1234145 : GTTGTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGATAATAATTCACCA : 1234089 209 : sAlaCysGlyMetIleGluIleLeuGly : 217 |||| !!||||||.!!! :!:! !||| sAlaSerGlyMetPheAlaValCysGly 1234088 : TGCCAGCGGAATGTTCGCCGTGTGCGGG : 1234060 vulgar: NvOr201 134 217 . KQ414851.1 1234311 1234059 - 128 M 34 102 G 0 3 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234311 128 - . gene_id 3 ; sequence NvOr201 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234311 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234311 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234311 128 - . alignment_id 3 ; Query NvOr201 ; Align 1234312 135 102 ; Align 1234207 169 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr203 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 155 Query range: 124 -> 217 Target range: 1224306 -> 1224024 125 : AsnPheMetTyrIleGlyAlaValTyrSerAlaLeuIleSerTyrMetValLeuPr : 143 ......:::::: :!!:!!!::! !!.!|||:!! !|||||| !!!!|| LysLeuIlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPhePr 1224306 : aaattaattttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCC : 1224252 144 : oLeuThrProIleIleLeuAspPheIleValProLeuAsnGluSerArgProLysG : 162 ||||! ! ! :!!|||||| !!:!!!.!||||||||||||!!!||||||:::: oLeuIleAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgA 1224251 : ATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTA : 1224195 163 : lnProLeuIleMetAlaGluPhe<->PheIleAspGlnAspLysTyrPheTyrPro : 179 :!! !|||:!! !.!...!:! |||||||||:!! !!:!!:!!|||||| ! rgLeuLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSer 1224194 : GGCTTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGC : 1224141 180 : LeuMetIleHisAlaTyrLeuSerValLeuTyrGlyIleIleProLeuLeuGlyTh : 198 :!!! .!!||| !||| !||||||:!!! ! !! !!: !:!!:!!!.!.. ValAsnPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaVa 1224140 : GTGAATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGT : 1224084 199 : rAspThrLeuTyrMetAsnCysValHisHisSerCysGlyMetLeuLysIleLeuG : 217 !|||! !||||||!!:!.! !:!! !||| !||||||:!!!!! !:!:! !| lAspMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaValCysG 1224083 : GGATATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTGTGTG : 1224027 218 : ly : 217 || ly 1224026 : GG : 1224025 vulgar: NvOr203 124 217 . KQ414851.1 1224306 1224024 - 155 M 45 135 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224306 155 - . gene_id 1 ; sequence NvOr203 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224306 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224306 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224306 155 - . alignment_id 1 ; Query NvOr203 ; Align 1224307 125 135 ; Align 1224169 170 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr203 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 151 Query range: 129 -> 217 Target range: 1243863 -> 1243599 130 : GlyAlaValTyrSerAlaLeuIleSerTyrMetValLeuProLeuThrProIleIl : 148 |||.!!:!!!:!! ! !! !|||! !!:!:!::!!!!!||||||! !||| !|| GlyThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIl 1243863 : GGTACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAAT : 1243809 149 : eLeuAspPheIleValProLeuAsnGluSerArgProLysGlnProLeuIleMetA : 167 ||||||| !!:!! !||||||||||||!!!||| !!::! ! :::||| eLeuAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysL 1243808 : ATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaat : 1243752 168 : laGluPhePheIleAspGlnAspLysTyrPheTyrProLeuMetIleHisAlaTyr : 185 ::::::.!..!!|||...:::||| |||||| ||| :!!:!!.!! ! euGlnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGly 1243751 : tgcaataccTGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGC : 1243698 186 : LeuSerValLeuTyrGlyIleIleProLeuLeuGlyThrAspThrLeuTyrMetAs : 204 ! !!!! !!!! !!!:!!: !:!!:!! !! !|||.!!||||||:!! TrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValVa 1243697 : TGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGT : 1243641 205 : nCysValHisHisSerCysGlyMetLeuLysIleLeuGly : 217 !:!!||||||!!!||||||:!:!!! :!!! !||| lIleIleHisHisThrCysGlyLeuPheAlaValCysGly 1243640 : AATCATTCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: NvOr203 129 217 . KQ414851.1 1243863 1243599 - 151 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243863 151 - . gene_id 2 ; sequence NvOr203 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243863 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243863 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243863 151 - . alignment_id 2 ; Query NvOr203 ; Align 1243864 130 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr203 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 126 -> 217 Target range: 1234335 -> 1234059 127 : MetTyrIleGlyAlaValTyrSerAlaLeuIleSerTyrMetValLeuProLeuTh : 145 .!.!:! !! !.!!:!! ||| !:!!:!! !!:!:!!:!!:!!||||||.. PhePheSerAspThrLeuLeuSerPheMetValValPheLeuLeuValProLeuVa 1234335 : TTCTTCTCAGATACATTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGT : 1234281 146 : rProIleIleLeuAspPheIleValProLeuAsnGluSerArgProLysGlnProL : 164 ! ! !.!!|||||| !!:!!:!!||||||||||||!!!||||||::!|||! ! lPheProPheLeuAspValValLeuProLeuAsnGluThrArgProArgGlnGlnG 1234280 : TTTTCCATTCTTGGATGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAG : 1234224 165 : euIleMetAlaGluPhe<->PheIleAspGlnAspLysTyrPheTyrProLeuMet : 181 !.!!! !.!.!.!:! !:!.!!|||:!!! ! ||||||!:! !:!! lyPheArgValAsnTyrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyr 1234223 : GATTCAGAGTTAACTATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTAC : 1234170 182 : IleHisAlaTyrLeuSerValLeuTyrGlyIleIleProLeuLeuGlyThrAspTh : 200 .!!!!. ! !! !.!!!.!:!! !! !:!!!!: !:!!:!! !..!|||:! PheGlnLeuAlaTrpGlyAlaValValValValMetIleIleIleThrValAspSe 1234169 : TTTCAATTGGCCTGGGGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTC : 1234113 201 : rLeuTyrMetAsnCysValHisHisSerCysGlyMetLeuLysIleLeuGly : 217 !|||||||||! :!!||||||:!! !!||||||!!! :!:! !||| rLeuTyrMetIleIleIleHisHisAlaSerGlyMetPheAlaValCysGly 1234112 : GTTGTACATGATAATAATTCACCATGCCAGCGGAATGTTCGCCGTGTGCGGG : 1234060 vulgar: NvOr203 126 217 . KQ414851.1 1234335 1234059 - 124 M 43 129 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234335 124 - . gene_id 3 ; sequence NvOr203 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234335 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234335 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234335 124 - . alignment_id 3 ; Query NvOr203 ; Align 1234336 127 129 ; Align 1234204 170 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr203 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 130 -> 231 Target range: 1240085 -> 1239779 131 : AlaValTyrSerAlaLeuIleSerTyrMetValLeuProLeuThrProIleIleLe : 149 !.!:!!!:!|||...|||... ::::::|||:!!|||::: ||| :::|| ValLeuPheSerValLeuPheIlePheLeuValValProIlePheProProLeuLe 1240085 : GTTTTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcctcctcttct : 1240031 150 : uAspPheIleValProLeuAsnGluSerArgProLysGlnProLeuIleMetAlaG : 168 ||||.!!:!! !||||||||||||!!!||| !!:::||| :::... .... uAspIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIlePheLysValA 1240030 : ggACATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatattcaaagtta : 1239974 169 : luPhe<->PheIleAspGlnAspLysTyrPheTyrProLeuMetIleHisAlaTyr : 185 ..!:! .!!||||||::!|||:!! ! ! ! ! .!!||| !! ! snTyrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPheHisLeuSer 1239973 : aTTACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTTCACTTGTCT : 1239920 186 : LeuSerValLeuTyrGlyIleIleProLeuLeuGlyThrAspThrLeuTyrMetAs : 204 ! !!!!..!:!! ! ! ||| !!:!!|||.!!:!!!!: !:!!|||:!: TrpThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIleTyrValLe 1239919 : TGGACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGTCCT : 1239863 205 : nCysValHisHisSerCysGlyMetLeuLysIleLeuGlyAsnArgIleArgAsnI : 223 ! !:!!||||||!!! !!|||:!!!!! :!: !||| ...:::::: uLeuIleHisHisThrSerGlyLeuPheAlaValAlaGly***IlePheLysHisT 1239862 : TCTTATTCATCATACCAGCGGTCTGTTTGCTGTGGCTGggtaaatattcaaacata : 1239806 224 : leLeuAsnSerSerSerArgGluLeu : 231 !! !||| :::.........::: hrCysAsnIleAsnGluGluAsnIle 1239805 : CCTGTAacataaacgaagaaaatata : 1239780 vulgar: NvOr203 130 231 . KQ414851.1 1240085 1239779 - 118 M 39 117 G 0 3 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239780 1240085 118 - . gene_id 4 ; sequence NvOr203 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239780 1240085 . - . KQ414851.1 exonerate:protein2genome:local exon 1239780 1240085 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239780 1240085 118 - . alignment_id 4 ; Query NvOr203 ; Align 1240086 131 117 ; Align 1239966 170 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr199PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 105 -> 181 Target range: 1224255 -> 1224024 106 : IleProLeuLeuProLeuValLeuAspIleValZedSerLeuAsnGluSerArgPr : 124 .!!||||||:!! !! !|||||||||:!!||| !!|||||||||!!!||||| PheProLeuIleAsnProValLeuAspValValAlaProLeuAsnGluThrArgPr 1224255 : TTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACC : 1224201 125 : oLeuLysSerProPheThrCysGluPhe<->PheValAspProAspLysTyrTyrP : 142 |! !!:! ! !.!! !! !...!:! |||:!!||| ! !!:!!:!!!:!! oArgArgLeuLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPheT 1224200 : CCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTT : 1224144 143 : heThrIleLeuAlaGlnAsnTyrIleSerAlaLeuAlaSerProLeuProLeuVal : 160 :!!:!:!: ! !!!. |||! !|||!.!:!!:!!!!! !:!! !:!!:!! yrSerValAsnPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIle 1224143 : ATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATC : 1224090 161 : GlyMetAspLeuPhePheIleAsnCysCysAsnHisIleCysArgIleIleGlyIl : 179 !.!:!!|||:!!!!.!:!|||!.! ! ! !|||:!!||| !!:!:.!!!.!:! AlaValAspMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaVa 1224089 : GCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGT : 1224033 180 : eLeuGly : 181 :! !||| lCysGly 1224032 : GTGTGGG : 1224025 vulgar: NvOr199PSE 105 181 . KQ414851.1 1224255 1224024 - 102 M 28 84 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224255 102 - . gene_id 1 ; sequence NvOr199PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224255 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224255 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224255 102 - . alignment_id 1 ; Query NvOr199PSE ; Align 1224256 106 84 ; Align 1224169 134 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr205PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 136 -> 224 Target range: 1243863 -> 1243599 137 : GlyLeuIleTyrAlaAlaValLeuGlnTrpMetLeuLeuProLeuAlaProLeuLe : 155 ||| !:!:!:! ! ! !:!! !!:::!:|||!!!|||||| !|||! !:! GlyThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIl 1243863 : GGTACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAAT : 1243809 156 : uLeuAspTyrIleLysProLeuAsnGluSerArgSerLeuGlnProLeuPheMetV : 174 !|||||| !:!!..!||||||||||||!!!||||||! ! ! :::... : eLeuAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysL 1243808 : ATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaat : 1243752 175 : alGluPheTyrIleAspProAspLysTyrPheTyrThrIleLeuAlaGlnAsnTyr : 192 :::::::: .!!||| :::||| ||||||:::::: !.! ! !.! ! euGlnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGly 1243751 : tgcaataccTGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGC : 1243698 193 : ValCysAlaLeuValSerProIleSerIleIleAlaMetAspLeuIlePheMetAs : 211 !|||:!!!!!:!!!!! !!!: !||||||.!!!!:||| !:!!!:!:!! TrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValVa 1243697 : TGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGT : 1243641 212 : nCysAlaAsnHisIleCysGlyMetIleTrpIleLeuGly : 224 ! !:!!|||! ||||||:!:.!! :!!! !||| lIleIleHisHisThrCysGlyLeuPheAlaValCysGly 1243640 : AATCATTCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: NvOr205PSE 136 224 . KQ414851.1 1243863 1243599 - 139 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243863 139 - . gene_id 1 ; sequence NvOr205PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243863 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243863 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243863 139 - . alignment_id 1 ; Query NvOr205PSE ; Align 1243864 137 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr205PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 138 -> 224 Target range: 1224285 -> 1224024 139 : IleTyrAlaAlaValLeuGlnTrpMetLeuLeuProLeuAlaProLeuLeuLeuAs : 157 :!:!:: !!.!:!!||| !!::||| !!!!|||||| ! !! !:!!||||| LeuTrpIleValLeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAs 1224285 : TTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGA : 1224231 158 : pTyrIleLysProLeuAsnGluSerArgSerLeuGlnProLeuPheMetValGluP : 176 | !:!! !||||||||||||!!!||| !!! !::!! !|||.!! |||...! pValValAlaProLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerT 1224230 : TGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTT : 1224174 177 : he<->TyrIleAspProAspLysTyrPheTyrThrIleLeuAlaGlnAsnTyrVal : 193 :! !:!|||||| ! !!:!!:!!||||||!:!:!: ! !!!. |||..! yrIlePheIleAspGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThr 1224173 : ACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACC : 1224120 194 : CysAlaLeuValSerProIleSerIleIleAlaMetAspLeuIlePheMetAsnCy : 212 !!!.!:!! !!!! !!!:! !|||||||||:!!|||:!!:!!!:!!!:!.! SerValIleSerCysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIl 1224119 : AGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTAT : 1224063 213 : sAlaAsnHisIleCysGlyMetIleTrpIleLeuGly : 224 ! ! !|||:!!||||||:!!.!! :!:! !||| eIlePheHisLeuCysGlyLeuPheAlaValCysGly 1224062 : CATTTTTCACCTTTGCGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: NvOr205PSE 138 224 . KQ414851.1 1224285 1224024 - 120 M 38 114 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224285 120 - . gene_id 2 ; sequence NvOr205PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224285 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224285 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224285 120 - . alignment_id 2 ; Query NvOr205PSE ; Align 1224286 139 114 ; Align 1224169 177 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr205PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 138 -> 224 Target range: 1234320 -> 1234059 139 : IleTyrAlaAlaValLeuGlnTrpMetLeuLeuProLeuAlaProLeuLeuLeuAs : 157 :!! :!! !:!!:!! !:::!!|||:!!||||||!.! !! !!!!||||| LeuLeuSerPheMetValValPheLeuLeuValProLeuValPheProPheLeuAs 1234320 : TTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGA : 1234266 158 : pTyrIleLysProLeuAsnGluSerArgSerLeuGlnProLeuPheMetValGluP : 176 | !:!! ||||||||||||!!!||| !!! !|||! ! !|||! |||.!.! pValValLeuProLeuAsnGluThrArgProArgGlnGlnGlyPheArgValAsnT 1234265 : TGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACT : 1234209 177 : he<->TyrIleAspProAspLysTyrPheTyrThrIleLeuAlaGlnAsnTyrVal : 193 :! |||.!!||| !! ! ||||||!:!!:!:!:! ! !||| ! ! yrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrp 1234208 : ATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGG : 1234155 194 : CysAlaLeuValSerProIleSerIleIleAlaMetAspLeuIlePheMetAsnCy : 212 !!|||:!!||| ! !!!:! !||||||.!!:!:|||! !:!:!:!|||! GlyAlaValValValValMetIleIleIleThrValAspSerLeuTyrMetIleIl 1234154 : GGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGATAAT : 1234098 213 : sAlaAsnHisIleCysGlyMetIleTrpIleLeuGly : 224 !:!!||| ! !!||||||.!! :!:! !||| eIleHisHisAlaSerGlyMetPheAlaValCysGly 1234097 : AATTCACCATGCCAGCGGAATGTTCGCCGTGTGCGGG : 1234060 vulgar: NvOr205PSE 138 224 . KQ414851.1 1234320 1234059 - 106 M 38 114 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234320 106 - . gene_id 3 ; sequence NvOr205PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234320 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234320 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234320 106 - . alignment_id 3 ; Query NvOr205PSE ; Align 1234321 139 114 ; Align 1234204 177 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr205PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 137 -> 224 Target range: 1240085 -> 1239821 138 : LeuIleTyrAlaAlaValLeuGlnTrpMetLeuLeuProLeuAlaProLeuLeuLe : 156 :!!:!!!:!:!:...:::... :::::::!!:!!|||::: ||| ||||| ValLeuPheSerValLeuPheIlePheLeuValValProIlePheProProLeuLe 1240085 : GTTTTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcctcctcttct : 1240031 157 : uAspTyrIleLysProLeuAsnGluSerArgSerLeuGlnProLeuPheMetValG : 175 |||| !:!!|||||||||||||||!!!|||:!!! ||| :::||| |||. uAspIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIlePheLysValA 1240030 : ggACATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatattcaaagtta : 1239974 176 : luPhe<->TyrIleAspProAspLysTyrPheTyrThrIleLeuAlaGlnAsnTyr : 192 ..!:! !|||||| !|||:!! ! ! ! !! !! ! !!!. ! ! snTyrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPheHisLeuSer 1239973 : aTTACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTTCACTTGTCT : 1239920 193 : ValCysAlaLeuValSerProIleSerIleIleAlaMetAspLeuIlePheMetAs : 211 ! .!!:!!..! ! !||||||:!::!!::! !!:||||||!:!:!: TrpThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIleTyrValLe 1239919 : TGGACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGTCCT : 1239863 212 : nCysAlaAsnHisIleCysGlyMetIleTrpIleLeuGly : 224 ! ! !:!!|||! ! !!|||:!!.!! :!: !||| uLeuIleHisHisThrSerGlyLeuPheAlaValAlaGly 1239862 : TCTTATTCATCATACCAGCGGTCTGTTTGCTGTGGCTGgg : 1239822 vulgar: NvOr205PSE 137 224 . KQ414851.1 1240085 1239821 - 104 M 39 117 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240085 104 - . gene_id 4 ; sequence NvOr205PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239822 1240085 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240085 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240085 104 - . alignment_id 4 ; Query NvOr205PSE ; Align 1240086 138 117 ; Align 1239966 177 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr213PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 345 -> 396 Target range: 1222505 -> 1222352 346 : TyrSerCysHisTrpTyrAsnLeuSerValLysGlyGlnLysLeuValTyrLeuLe : 364 |||:!!! ! ! ||||||.!.||| !!||||||||||||||||||:!!||| !:! TyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTyrThrMe 1222505 : TACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTACACGAT : 1222451 365 : uMetMetArgThrPheLysThrThrLysIleArgAlaGlyGlyLeuIleGluIleA : 383 !...||||||:!!.!.::! !! !! !:!!! !|||||||||:!! !|||!!:| tGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisGluMetA 1222450 : GCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATGAGATGA : 1222394 384 : snIleHisLeuPheGluSerValLeuLysThrSerLeuSer : 396 |||||.!. !|||! !! !|||! !!!.!.!! !:!!!:! snIleGluSerPheGlyIleValCysAsnAsnMetIleAsn 1222393 : ACATCGAGAGTTTCGGAATAGTATGTAATAATATGATAAAT : 1222353 vulgar: NvOr213PSE 345 396 . KQ414851.1 1222505 1222352 - 111 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222353 1222505 111 - . gene_id 1 ; sequence NvOr213PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1222353 1222505 . - . KQ414851.1 exonerate:protein2genome:local exon 1222353 1222505 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222353 1222505 111 - . alignment_id 1 ; Query NvOr213PSE ; Align 1222506 346 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr197PSE Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 68 -> 160 Target range: 1224303 -> 1224030 69 : LeuIleTyrThrTyrTyrLeuLeuPheAlaTrpMetIleTyrThrPheMetProPh : 87 ||||||:::::: |||! !.!.!.! !:!::!!|||! ! !.!.|||!! LeuIlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLe 1224303 : ttaattttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATT : 1224249 88 : eThrProTyrPheLeuAspGlnIlePheProLeuArgAsnGlyThrArgProIleG : 106 .! ! ! !!|||||| :!! |||||| |||! !||||||||| !: uIleAsnProValLeuAspValValAlaProLeu---AsnGluThrArgProArgA 1224248 : GATAAATCCGGTTTTGGATGTTGTTGCGCCGTTA---AACGAGACCCGACCCCGTA : 1224195 107 : lnLeuProPheTyrAlaAspTyrValIlePheAsnGlnLeuAspTyrHisTyrTrp : 124 :!||| !.!! !.!..!|||:!!.!!.!.:!!:!!! !!!::!! !||| ! rgLeuLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSer 1224194 : GGCTTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGC : 1224141 125 : CysCysGlyHisIleAlaValValTyrPheThrSerPhePheLeuTyrSerGlyVa : 143 ! !|||:!! !..! ! .!!:!!!!! .!.:!! ! !!.!|| ValAsnPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaVa 1224140 : GTGAATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGT : 1224084 144 : lAspGlyAlaTyrValLeuThrValLysHisValCysGlyLeuPheAlaIle : 160 |||| ! !|||:!! !! !:!! |||:!!|||||||||||||||:!: lAspMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaVal 1224083 : GGATATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTG : 1224031 vulgar: NvOr197PSE 68 160 . KQ414851.1 1224303 1224030 - 103 M 30 90 G 1 0 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224031 1224303 103 - . gene_id 1 ; sequence NvOr197PSE ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224031 1224303 . - . KQ414851.1 exonerate:protein2genome:local exon 1224031 1224303 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1224031 1224303 103 - . alignment_id 1 ; Query NvOr197PSE ; Align 1224304 69 90 ; Align 1224214 100 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 136 -> 222 Target range: 1644 -> 1902 137 : IleIleCysTyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgProLeuAs : 157 :!!||| !:!:!!! ! ||| ! |||||| !:!!||||||:!!:!!! !||| !|| ValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProLysAs 1645 : GTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAAAA : 1705 158 : nGluThrArgProArgGlnLeuIleTyrMetValGluPhePheIleAspGluAspLysTyrP : 178 ||||:!!||| ! ! !! !|||||| !!.! ! !:!|||! !|||||| !!|||||| nGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrA 1706 : CGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACG : 1768 179 : heTyrGluIleGlnIleHisSerTyrAlaThrThrLeuIleGlyPheIleProLeuIleSer : 198 ! ! ||| ! |||! ! :!!..!! !|||:!:! !||| ! !! !.!!:!! spValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrPheAla 1769 : ACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCT : 1828 199 : IleAspThrPheTyrAlaAlaSerValGlnHisAlaCysGlyMetPheAlaIleLeuGlyHi : 219 !|||||| !||| ! ! !|||||||||!.!||||||:!!!!.|||:!:! !||| CysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly** 1829 : TGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgta : 1891 220 : sArgLeuArg : 222 ::::::||| *LysIleArg 1892 : aaaaattcga : 1902 vulgar: NvOr204 136 222 . KQ414921.1 1644 1902 + 157 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1645 1902 157 + . gene_id 1 ; sequence NvOr204 ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1645 1902 . + . KQ414921.1 exonerate:protein2genome:local exon 1645 1902 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1645 1902 157 + . alignment_id 1 ; Query NvOr204 ; Align 1645 137 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr211 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 129 -> 225 Target range: 32461 -> 32749 130 : ArgPheLeuIleIleGlyTyrThrLeuCysIleIleGlySerLeuAlaThrTyrSerLeu : 149 ||||||......::: ! !||| !! !:!! ! !.!!:!! !:!!|||:!!:!! ArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIle 32462 : cgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATA : 32519 150 : GluProLeuValProGlnIleLeuAspLysLeuSerProLeuAsnGluSerArgProIle : 169 ! !! !!!!:!!||| ! |||:!!||| !:!!:!!||||||||||||||||||! ! ! ValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHis 32520 : GTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCAT : 32579 170 : LysThrPheLeuGluValGluTyrLeuValAspHisArgArgTyrTyrThrAlaIleTyr : 189 ! ! ! !! ! !||||||!!!||||||...::::::|||::: !||| ValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAla 32580 : GTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCG : 32639 190 : LeuHisAsnMetGlnAlaAlaCysTrpValIleLeuThrValLeuAlaIleAspAlaTyr : 209 ||||||! :!: !.!!!.! ! ! !:!: !..!!.! !|||:::|||::: LeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIle 32640 : TTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaatt : 32699 210 : PheValMetIleValGlnHisAlaCysSerMetPheAlaValLeuGly : 225 |||:::......::! |||!.!|||:!!! ||| !:!!|||||| PheIlePhePheMetPheHisValCysAlaLysPheAsnIleLeuGly 32700 : ttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATTCTCGGG : 32749 vulgar: NvOr211 129 225 . KQ415081.1 32461 32749 + 139 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32462 32749 139 + . gene_id 1 ; sequence NvOr211 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32462 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32462 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32462 32749 139 + . alignment_id 1 ; Query NvOr211 ; Align 32462 130 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr201 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 119 -> 217 Target range: 32455 -> 32749 120 : ThrGlyLysAlaPheAsnThrValTyrLeuSerLeuValThrValIleLeuLeuSerTyr : 139 ||| ::: ||| :!! ! !.!!!!!||| !:!! !:!!!!!|||||| ThrLeuArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyr 32456 : ACtctccgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTAC : 32513 140 : MetLeuIleProMetLeuProAlaAlaLeuAspLeuValAsnProLeuAsnGluSerArg : 159 :!!:!:! !.!.|||||| ! !:!!|||:!!:!! |||||||||||||||||| AlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArg 32514 : GCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGA : 32573 160 : ProThrSerProLeuTyrLeuValGluLeuTyrIleAspGlnAspLysTyrPheTyrSer : 179 ! ! ! !! !! !||| !! !|||! !!:!:!!||||||...||||||||| ! HisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuPro 32574 : CACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccA : 32633 180 : ValLeuThrHisAlaTyrIleThrSerLeuAlaGlyIleLeuProLeuPheAlaIleAsp : 199 :!! ! !||| ! ! ||| ! ! !|||:!: ! ! ! |||:::||| IleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAsp 32634 : ATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgat : 32693 200 : SerLeuPheSerSerCysAlaHisHisAlaCysGlyMetIleGluIleLeuGly : 217 |||:::||| ! !|||!.!|||!.!! .!!.!.||||||||| SerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIleLeuGly 32694 : tcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATTCTCGGG : 32749 vulgar: NvOr201 119 217 . KQ415081.1 32455 32749 + 150 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32456 32749 150 + . gene_id 1 ; sequence NvOr201 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32456 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32456 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32456 32749 150 + . alignment_id 1 ; Query NvOr201 ; Align 32456 120 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr203 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 168 Query range: 121 -> 217 Target range: 32461 -> 32749 122 : LysLeuPheAsnPheMetTyrIleGlyAlaValTyrSerAlaLeuIleSerTyrMetVal : 141 :::...||| ...:!: !! !||| !||||||! !!.!:!!.!!|||||| :!! ArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIle 32462 : cgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATA : 32519 142 : LeuProLeuThrProIleIleLeuAspPheIleValProLeuAsnGluSerArgProLys : 161 :!!! !!!! !||| !|||:!!||| ! |||!.!||||||||||||||||||! ! ! ValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHis 32520 : GTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCAT : 32579 162 : GlnProLeuIleMetAlaGluPhePheIleAspGlnAspLysTyrPheTyrProLeuMet : 181 !! !! ! ! !.!|||!:!|||:!!||||||...||||||||| |||:!! ! ValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAla 32580 : GTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCG : 32639 182 : IleHisAlaTyrLeuSerValLeuTyrGlyIleIleProLeuLeuGlyThrAspThrLeu : 201 :!:||| ! ! !!!!||| ! !|||:!:! ! ! !!.!...|||:::::: LeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIle 32640 : TTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaatt : 32699 202 : TyrMetAsnCysValHisHisSerCysGlyMetLeuLysIleLeuGly : 217 :::::: ::! !||| !|||!.!! !!!!!.||||||||| PheIlePhePheMetPheHisValCysAlaLysPheAsnIleLeuGly 32700 : ttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATTCTCGGG : 32749 vulgar: NvOr203 121 217 . KQ415081.1 32461 32749 + 168 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32462 32749 168 + . gene_id 1 ; sequence NvOr203 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32462 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32462 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32462 32749 168 + . alignment_id 1 ; Query NvOr203 ; Align 32462 122 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 136 -> 218 Target range: 32503 -> 32749 137 : IleIleCysTyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgProLeu : 156 |||.!!! !||| !:!! ! ! !||| !|||!:!:!!:!!|||:!!||| !|||||| IlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeu 32504 : ATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTA : 32561 157 : AsnGluThrArgProArgGlnLeuIleTyrMetValGluPhePheIleAspGluAspLys : 176 ||||||:!!|||! !!.! !||| ||| ! !|||!:!|||:!!|||:::...||| AsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLys 32562 : AACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaa : 32621 177 : TyrPheTyrGluIleGlnIleHisSerTyrAlaThrThrLeuIleGlyPheIleProLeu : 196 |||||| !||| !:!:|||! ! !!.!|||..! !:!!|||.!.! ! ! TyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAla 32622 : tatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCC : 32681 197 : IleSerIleAspThrPheTyrAlaAlaSerValGlnHisAlaCysGlyMetPheAlaIle : 216 ! :!!:::|||:::...::: ::! |||!.!|||!.!! ||| !||| ThrAlaValAspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIle 32682 : ACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATT : 32741 217 : LeuGly : 218 |||||| LeuGly 32742 : CTCGGG : 32749 vulgar: NvOr204 136 218 . KQ415081.1 32503 32749 + 167 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32504 32749 167 + . gene_id 1 ; sequence NvOr204 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32504 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32504 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32504 32749 167 + . alignment_id 1 ; Query NvOr204 ; Align 32504 137 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr198 Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 129 -> 220 Target range: 32476 -> 32749 130 : ValTyrIleGlyLeuValAlaValValLeuLeuSerTyrMetLeuLeuProMetLeuPro : 149 :!! !! !|||!!!||| !:!!! !:!!!!!|||||| :!!:!!! !.!.|||||| IleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuPro 32477 : aTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCG : 32534 150 : AlaValLeuAspLeuIleAsnProLeuAsnGluSerArgProLysSerProLeuTyrMet : 169 !:!!:!!|||:!!||| ||||||||||||||||||! ! ! !! !! !||| TyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAla 32535 : TACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCC : 32594 170 : ValGluPheTyrIleAspGlnAspLysTyrPheTyrSerValLeuThrHisAlaTyrIle : 189 ! !|||!:!!:!:!!||||||...||||||||| !:!! ! !||| ! ! GlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGly 32595 : GGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGG : 32654 190 : ThrSerLeuAlaGlyValLeuProLeuPheAlaThrAspLeuLeuPheSerAsnCysAla : 209 ||| ! ! !|||:!! ! ! ! |||...||| :::||| ! ThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMet 32655 : ACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatG : 32714 210 : HisHisAlaCysGlyIleIleLysIleLeuGly : 220 !|||!.!|||!.!! !.!!!!.||||||||| PheHisValCysAlaLysPheAsnIleLeuGly 32715 : TTCCACGTTTGCGCCAAATTCAATATTCTCGGG : 32749 vulgar: NvOr198 129 220 . KQ415081.1 32476 32749 + 149 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32477 32749 149 + . gene_id 1 ; sequence NvOr198 ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32477 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32477 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32477 32749 149 + . alignment_id 1 ; Query NvOr198 ; Align 32477 130 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr205PSE Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 128 -> 224 Target range: 32461 -> 32749 129 : HisPheLeuAsnLeuGlyTyrIleGlyLeuIleTyrAlaAlaValLeuGlnTrpMetLeu : 148 ...|||... ||| ! !! !|||!!!:!!||| !!.!:!!!!!...!:: :!! ArgPhePhePheLeuIleThrThrGlyPheValTyrIleGlyIlePheSerTyrAlaIle 32462 : cgtttctttttcctaaTTACTACAGGATTCGTATACATTGGAATATTTTCCTACGCAATA : 32519 149 : LeuProLeuAlaProLeuLeuLeuAspTyrIleLysProLeuAsnGluSerArgSerLeu : 168 :!!! !!!! !|||! !:!!:!!||| ||| !|||||||||||||||||| !! ! ValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHisHis 32520 : GTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCAT : 32579 169 : GlnProLeuPheMetValGluPheTyrIleAspProAspLysTyrPheTyrThrIleLeu : 188 !! !! !!:! ! !|||!:!!:!:!!||| ...||||||||| !||| ! ValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIleAla 32580 : GTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCG : 32639 189 : AlaGlnAsnTyrValCysAlaLeuValSerProIleSerIleIleAlaMetAspLeuIle : 208 !!!.! !! ! !!.! !:!!.!!! !! ! !! |||:::||| ||| LeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSerIle 32640 : TTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaatt : 32699 209 : PheMetAsnCysAlaAsnHisIleCysGlyMetIleTrpIleLeuGly : 224 |||::: ! !|||:!!|||!.!! .!! ||||||||| PheIlePhePheMetPheHisValCysAlaLysPheAsnIleLeuGly 32700 : ttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATTCTCGGG : 32749 vulgar: NvOr205PSE 128 224 . KQ415081.1 32461 32749 + 118 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32462 32749 118 + . gene_id 1 ; sequence NvOr205PSE ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32462 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32462 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32462 32749 118 + . alignment_id 1 ; Query NvOr205PSE ; Align 32462 129 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 157 Query range: 136 -> 222 Target range: 220 -> 478 137 : IleIleCysTyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgProLeuAsnG : 158 :!!||| !:!:!!! ! ||| ! |||||| !:!!||||||:!!:!!! !||| !|||| ValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProLysAsnG 221 : GTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAAAACG : 284 159 : luThrArgProArgGlnLeuIleTyrMetValGluPhePheIleAspGluAspLysTyrPheTy : 179 ||:!!||| ! ! !! !|||||| !!.! ! !:!|||! !|||||| !!|||||| ! luSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspVa 285 : AGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGT : 347 180 : rGluIleGlnIleHisSerTyrAlaThrThrLeuIleGlyPheIleProLeuIleSerIleAsp : 200 ! ||| ! |||! ! :!!..!! !|||:!:! !||| ! !! !.!!:!! !||| lTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrPheAlaCysAsp 348 : GTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGAC : 410 201 : ThrPheTyrAlaAlaSerValGlnHisAlaCysGlyMetPheAlaIleLeuGlyHisArgLeuA : 222 ||| !||| ! ! !|||||||||!.!||||||:!!!!.|||:!:! !||| ::::::| ThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly***LysIleA 411 : ACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaattc : 476 223 : rg : 222 || rg 477 : ga : 478 vulgar: NvOr204 136 222 . LHQN01023902.1 220 478 + 157 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 221 478 157 + . gene_id 1 ; sequence NvOr204 ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 221 478 . + . LHQN01023902.1 exonerate:protein2genome:local exon 221 478 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 221 478 157 + . alignment_id 1 ; Query NvOr204 ; Align 221 137 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 176 Query range: 139 -> 218 Target range: 5005 -> 5242 140 : TyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgProLeuAsnGluThrAr : 160 !:!:!!! !!!.||||||..! !! :!!||||||:!!:!!! !||||||||||||||||| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5006 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5066 161 : gProArgGlnLeuIleTyrMetValGluPhePheIleAspGluAspLysTyrPheTyrGluI : 181 | !!||| !!!!:!!||| !.! ! !:!|||:!!||||||||||||||| !||| !| gAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuI 5067 : AGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGA : 5129 182 : leGlnIleHisSerTyrAlaThrThrLeuIleGlyPheIleProLeuIleSerIleAspThr : 201 || ! |||! !||| !..!..!:!!!!: !.!! ! !!!! !:!! !|||.!! leValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 5130 : TCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 5189 202 : PheTyrAlaAlaSerValGlnHisAlaCysGlyMetPheAlaIleLeuGly : 218 !|||!.! !:!!||||||||||||||||||:!!!!.|||||| !||| AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5190 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5242 vulgar: NvOr204 139 218 . LHQN01025741.1 5005 5242 + 176 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5006 5242 176 + . gene_id 1 ; sequence NvOr204 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5006 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5006 5242 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5006 5242 176 + . alignment_id 1 ; Query NvOr204 ; Align 5006 140 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 147 Query range: 137 -> 218 Target range: 1588 -> 1831 138 : IleCysTyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgProLeuAsnGl : 158 :!! !:! !! ! ! !!.!!|||||| !||||||||||||||| !||| !||||| ValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGl 1589 : GTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGA : 1649 159 : uThrArgProArgGlnLeuIleTyrMetValGluPhePheIleAspGluAspLysTyrPheT : 179 |:!!||| ! !.!.!!!|||||| !.! ! !:! !:!!||||||!!::!!:!!!:!| uSerArgGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrT 1650 : ATCGCGTGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAGGAACATTATT : 1712 180 : yrGluIleGlnIleHisSerTyrAlaThrThrLeuIleGlyPheIleProLeuIleSerIle : 199 || :!:..! !|||! ! !..!..!! ! !:!!! !|||.!! !! !|||||| ! yrIleLeuMetGlyHisMetLeuCysValIleThrValValPhePheValTyrIleSerCys 1713 : ACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTCTACATCTCCTGT : 1772 200 : AspThrPheTyrAlaAlaSerValGlnHisAlaCysGlyMetPheAlaIleLeuGly : 218 ||||||.!!||| ! !! !||||||||||||||||||:!:.!. !:!!! !||| AspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnValSerGly 1773 : GACACGATCTACATGAATATCGTGCAACACGCGTGCGGATTACTGAACGTCTCTGGG : 1831 vulgar: NvOr204 137 218 . LHQN01025741.1 1588 1831 + 147 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1589 1831 147 + . gene_id 2 ; sequence NvOr204 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1589 1831 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1589 1831 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1589 1831 147 + . alignment_id 2 ; Query NvOr204 ; Align 1589 138 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 139 -> 218 Target range: 11498 -> 11735 140 : TyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgProLeuAsnGluThr : 159 !:!:!!! ! ! |||!::||| !! :!!:!!:!!! ! !!:! !!! !||| !||| PheIleGlnValProTrpThrThrArgLeuValAsnSerTyrLysThrGlnAsnIleThr 11499 : TTCATACAAGTGCCATGGACGACCCGATTGGTGAACTCGTACAAGACACAGAATATAACG : 11556 160 : ArgProArgGlnLeuIleTyrMetValGluPhePheIleAspGluAspLysTyrPheTyr : 179 ! ! ! !|||!!!:!! ! ! ! !:!|||:!!||||||! :!!|||!:!||| ProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGluValGluTyrTyrTyr 11557 : CCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTAT : 11616 180 : GluIleGlnIleHisSerTyrAlaThrThrLeuIleGlyPheIleProLeuIleSerIle : 199 ! ||| !:!!|||.!! ..!|||..!||||||! ! ! :!: !! ! !:!! ! TyrIleIleLeuHisGlyThrCysThrValLeuIleValValValValTyrCysAlaCys 11617 : TACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTGCCTGC : 11676 200 : AspThrPheTyrAlaAlaSerValGlnHisAlaCysGlyMetPheAlaIleLeuGly : 218 |||||| !||| !!.! !|||||||||.!!||||||:!!||||||:!: !||| AspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly 11677 : GACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 11735 vulgar: NvOr204 139 218 . LHQN01025741.1 11498 11735 + 131 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11499 11735 131 + . gene_id 3 ; sequence NvOr204 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11499 11735 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11499 11735 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11499 11735 131 + . alignment_id 3 ; Query NvOr204 ; Align 11499 140 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 139 -> 184 Target range: 8916 -> 9051 140 : TyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgProLeuAsnGluThrAr : 160 !:!|||! ! ! ||||||.!!|||.!!:!!||||||:!! ! !|||||||||:!!||||| PheLeuCysValProPheAlaProIleIleLeuAspIleCysAlaProLeuAsnLysThrAr 8917 : TTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTGCGCGCCACTGAACAAAACGAG : 8977 161 : gProArgGlnLeuIleTyrMetValGluPhePheIleAspGluAspLysTyrPheTyrGluI : 181 | !||| !!!!:!!||| !.! ! !:!!::!!:||| !!::!!|||!:! !! gLysArgAlaPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMetIleM 8978 : AAAACGTGCGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATGATAA : 9040 182 : leGlnIleHis : 184 !: !|||||| etIleIleHis 9041 : TGATAATACAC : 9051 vulgar: NvOr204 139 184 . LHQN01025741.1 8916 9051 + 104 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 8917 9051 104 + . gene_id 4 ; sequence NvOr204 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 8917 9051 . + . LHQN01025741.1 exonerate:protein2genome:local exon 8917 9051 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 8917 9051 104 + . alignment_id 4 ; Query NvOr204 ; Align 8917 140 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr201 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 138 Query range: 131 -> 217 Target range: 4984 -> 5242 132 : ValThrValIleLeuLeuSerTyrMetLeuIleProMetLeuProAlaAlaLeuAspLeuVa : 152 :!!:!!:!! ! ! ! !!:!|||! !:!:|||.!.:!! !! !! !||||||:!!:! IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLe 4985 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCT : 5045 153 : lAsnProLeuAsnGluSerArgProThrSerProLeuTyrLeuValGluLeuTyrIleAspG : 173 !! ||||||||||||!!!||| !! !! ! !:!!|||! !!.! ! ! !!:!:!!|||: uMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspG 5046 : TATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACG : 5108 174 : lnAspLysTyrPheTyrSerValLeuThrHisAlaTyrIleThrSerLeuAlaGlyIleLeu : 193 !!||||||||| !|||! !:!!:!! !||| !|||:!!..! !:!! ! !|||! ! luAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSer 5109 : AGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCT : 5168 194 : ProLeuPheAlaIleAspSerLeuPheSerSerCysAlaHisHisAlaCysGlyMetIleGl : 214 !!!!! !||| !|||:!! !!:! !! !..!!.!!!.||||||||||||:!!:!:! ValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAl 5169 : GTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGC : 5231 215 : uIleLeuGly : 217 ||| !||| aIleAlaGly 5232 : CATTGCAGGG : 5242 vulgar: NvOr201 131 217 . LHQN01025741.1 4984 5242 + 138 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4985 5242 138 + . gene_id 1 ; sequence NvOr201 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4985 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4985 5242 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4985 5242 138 + . alignment_id 1 ; Query NvOr201 ; Align 4985 132 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr203 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 138 -> 217 Target range: 5005 -> 5242 139 : TyrMetValLeuProLeuThrProIleIleLeuAspPheIleValProLeuAsnGluSerAr : 159 !:!||| !||||||!!!..! !! |||||||||.!!:!!:!!||||||||||||!!!|| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5006 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5066 160 : gProLysGlnProLeuIleMetAlaGluPhePheIleAspGlnAspLysTyrPheTyrProL : 180 | !!::! ! !:!! ! ||| ! !:!|||:!!|||:!!||||||||| !||| !: gAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuI 5067 : AGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGA : 5129 181 : euMetIleHisAlaTyrLeuSerValLeuTyrGlyIleIleProLeuLeuGlyThrAspThr : 200 !!:!: ||| !|||||| !|||:!! !||| ! !!!!! !!.! !|||.!! leValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 5130 : TCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 5189 201 : LeuTyrMetAsnCysValHisHisSerCysGlyMetLeuLysIleLeuGly : 217 !|||:!! !!..!|||!!.|||:!!||||||:!!||| ||| !||| AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5190 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5242 vulgar: NvOr203 138 217 . LHQN01025741.1 5005 5242 + 159 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5006 5242 159 + . gene_id 1 ; sequence NvOr203 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5006 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5006 5242 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5006 5242 159 + . alignment_id 1 ; Query NvOr203 ; Align 5006 139 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr203 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 136 -> 217 Target range: 1588 -> 1831 137 : IleSerTyrMetValLeuProLeuThrProIleIleLeuAspPheIleValProLeuAsnGl : 157 :!!! !!:!! !:!! !!:!!|||||| !:!!||||||.!!||| !||| !||||| ValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGl 1589 : GTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGA : 1649 158 : uSerArgProLysGlnProLeuIleMetAlaGluPhePheIleAspGlnAspLysTyrPheT : 178 ||||||| ! .!. !:!! ! ||| ! !:! !:!!|||:!!!!::!!:!!!:!| uSerArgGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrT 1650 : ATCGCGTGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAGGAACATTATT : 1712 179 : yrProLeuMetIleHisAlaTyrLeuSerValLeuTyrGlyIleIleProLeuLeuGlyThr : 198 || !|||||| !||| ! !! ! !:!! ! ! !.!!.!! !! !:!!..! ! yrIleLeuMetGlyHisMetLeuCysValIleThrValValPhePheValTyrIleSerCys 1713 : ACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTCTACATCTCCTGT : 1772 199 : AspThrLeuTyrMetAsnCysValHisHisSerCysGlyMetLeuLysIleLeuGly : 217 ||||||:!!||||||||| !|||!!.|||:!!||||||:!:|||!!.:!!! !||| AspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnValSerGly 1773 : GACACGATCTACATGAATATCGTGCAACACGCGTGCGGATTACTGAACGTCTCTGGG : 1831 vulgar: NvOr203 136 217 . LHQN01025741.1 1588 1831 + 142 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1589 1831 142 + . gene_id 2 ; sequence NvOr203 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1589 1831 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1589 1831 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1589 1831 142 + . alignment_id 2 ; Query NvOr203 ; Align 1589 137 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr211 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 109 -> 225 Target range: 1295 -> 1831 110 : TrpLeuSerAlaArgAspAlaGluGluTyrAlaLeuLeuLysGluPheAlaGluGluGlyAr : 130 |||:!!!!!.!!||| !...||| ! !:!!:!! ! :!!!:!|||:!!..!||||| TrpValThrThrArgProLysSerGluMetAspIleMetAspLysTyrAlaLysArgGlyAr 1296 : TGGGTAACGACACGGCCGAAAAGTGAAATGGACATTATGGACAAGTACGCTAAAAGAGGCCG : 1356 131 : gPheLeuIleIleGlyTyrThr{L} >>>> Target Intron 1 >>>> {eu}CysI : 140 ||||!!!! ! ! !|||..!{:} 188 bp {!!} ! gPhePheSerArgLeuTyrVal{V}++ ++{al}AsnG 1357 : GTTTTTCAGTCGTTTGTACGTC{G}gt.........................ag{TA}AACG : 1574 141 : leIleGlySerLeuAlaThrTyrSerLeuGluProLeuValProGlnIleLeuAspLysLeu : 160 !:!: !!!!! !!.!! !!:!!!!! !! ! !!:!!..!|||!:::!!|||||| :!! lyLeuPheCysTyrValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIle 1575 : GACTGTTTTGCTACGTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATT : 1634 161 : SerProLeuAsnGluSerArgProIleLysThrPheLeuGluValGluTyrLeuValAspHi : 181 |||||| !|||||||||||| !:!! ! !.!!! ! !.! ! ||| !:!!|||.! SerProLysAsnGluSerArgGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAspGl 1635 : TCACCGAAAAACGAATCGCGTGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGACGA : 1697 182 : sArgArgTyrTyrThrAlaIleTyrLeuHisAsnMetGlnAlaAlaCysTrpValIleLeuT : 202 ...!..!:!!||| ! !:!: !|||! :!: !.! ! ! |||.!!!!!. uGluGluHisTyrTyrIleLeuMetGlyHisMetLeuCysValIleThrValValPhePheV 1698 : GGAGGAACATTATTACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCG : 1760 203 : hrValLeuAlaIleAspAlaTyrPheValMetIleValGlnHisAlaCysSerMetPheAla : 222 .! !:!!:!! !|||.!! !!:!:!!! ||||||||||||||||||.!!:!:.!. ! alTyrIleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsn 1761 : TCTACATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGCGGATTACTGAAC : 1820 223 : ValLeuGly : 225 |||! !||| ValSerGly 1821 : GTCTCTGGG : 1831 vulgar: NvOr211 109 225 . LHQN01025741.1 1295 1831 + 135 M 28 84 S 0 1 5 0 2 I 0 184 3 0 2 S 1 2 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1296 1831 135 + . gene_id 1 ; sequence NvOr211 ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 1296 1380 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1296 1380 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 1381 1382 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 1381 1568 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 1567 1568 . + . intron_id 0 ; splice_site "AG" LHQN01025741.1 exonerate:protein2genome:local cds 1569 1831 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1569 1831 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1296 1831 135 + . alignment_id 1 ; Query NvOr211 ; Align 1296 110 84 ; Align 1571 139 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr211 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 144 -> 225 Target range: 4999 -> 5242 145 : AlaThrTyrSerLeuGluProLeuValProGlnIleLeuAspLysLeuSerProLeuAsnGl : 165 ||| !!:!! !! ! !|||!!!||| !!! !|||||||||! |||! !||||||||||| AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGl 5000 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGA : 5060 166 : uSerArgProIleLysThrPheLeuGluValGluTyrLeuValAspHisArgArgTyrTyrT : 186 |!!!||| !! ! ! !!! ! !!.! ! |||!!!||||||.!. !!:!|||:!! uThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisT 5061 : GACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATT : 5123 187 : hrAlaIleTyrLeuHisAsnMetGlnAlaAlaCysTrpValIleLeuThrValLeuAlaIle : 206 ! !||| !|||! ! !.!!.! !:!!|||! !..! !!! !||| ! yrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCys 5124 : ACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGC : 5183 207 : AspAlaTyrPheValMetIleValGlnHisAlaCysSerMetPheAlaValLeuGly : 225 |||||| !!!:!||| !|||||||||||||||.!!:!!!!.|||:!! !||| AspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5184 : GATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5242 vulgar: NvOr211 144 225 . LHQN01025741.1 4999 5242 + 123 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5000 5242 123 + . gene_id 2 ; sequence NvOr211 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5000 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5000 5242 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5000 5242 123 + . alignment_id 2 ; Query NvOr211 ; Align 5000 145 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr205PSE Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 145 -> 224 Target range: 5005 -> 5242 146 : TrpMetLeuLeuProLeuAlaProLeuLeuLeuAspTyrIleLysProLeuAsnGluSerAr : 166 !::|||! !||||||!!!!.! !!! !:!!|||||| !:!!! !||||||||||||!!!|| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5006 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5066 167 : gSerLeuGlnProLeuPheMetValGluPheTyrIleAspProAspLysTyrPheTyrThrI : 187 |:!!! ! ! !:!!!:! !.! ! !:!!:!:!!||| !||||||||| !||| !| gAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuI 5067 : AGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGA : 5129 188 : leLeuAlaGlnAsnTyrValCysAlaLeuValSerProIleSerIleIleAlaMetAspLeu : 207 ||:!!!.!!!.! |||:!! !.!:!!:!! ! ! ! !.!! !||| ||| ! leValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 5130 : TCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 5189 208 : IlePheMetAsnCysAlaAsnHisIleCysGlyMetIleTrpIleLeuGly : 224 ! !!:!:!! !!..!!.!.!.||| !||||||:!!:!: ||| !||| AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5190 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5242 vulgar: NvOr205PSE 145 224 . LHQN01025741.1 5005 5242 + 123 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5006 5242 123 + . gene_id 1 ; sequence NvOr205PSE ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5006 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5006 5242 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5006 5242 123 + . alignment_id 1 ; Query NvOr205PSE ; Align 5006 146 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr198 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 134 -> 237 Target range: 4984 -> 5293 135 : ValAlaValValLeuLeuSerTyrMetLeuLeuProMetLeuProAlaValLeuAspLeuIl : 155 :!!:!!:!! ! ! ! !!:!|||! !||||||.!.:!! !! !!:!!||||||:!!:! IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLe 4985 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCT : 5045 156 : eAsnProLeuAsnGluSerArgProLysSerProLeuTyrMetValGluPheTyrIleAspG : 176 !! ||||||||||||!!!||| !!::!! ! !:!!||| !.! ! !:!!:!:!!|||: uMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspG 5046 : TATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACG : 5108 177 : lnAspLysTyrPheTyrSerValLeuThrHisAlaTyrIleThrSerLeuAlaGlyValLeu : 196 !!||||||||| !|||! !:!!:!! !||| !|||:!!..! !:!! ! !:!!! ! luAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSer 5109 : AGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCT : 5168 197 : ProLeuPheAlaThrAspLeuLeuPheSerAsnCysAlaHisHisAlaCysGlyIleIleLy : 217 !!!!! !||| !||| ! !!:! ! !!..!!.!!!.||||||||||||:!::!: ValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAl 5169 : GTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGC : 5231 218 : sIleLeuGlyArgArgIleGluAsnIleLeuSerGluGluProAlaLeuLysArgSerTyr : 237 ||| !||| ! !:!!:!!... !|||! !|||.!. ! !||| ! |||!:!!:! aIleAlaGly***LeuValGlnGlyGlnLeuMetGluAsnGlyPheLeuTyrArgAsnPhe 5232 : CATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAATGGTTTTCTTTATAGAAATTTC : 5293 vulgar: NvOr198 134 237 . LHQN01025741.1 4984 5293 + 161 M 103 309 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4985 5293 161 + . gene_id 1 ; sequence NvOr198 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4985 5293 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4985 5293 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4985 5293 161 + . alignment_id 1 ; Query NvOr198 ; Align 4985 135 309 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr198 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 141 -> 220 Target range: 1594 -> 1831 142 : TyrMetLeuLeuProMetLeuProAlaValLeuAspLeuIleAsnProLeuAsnGluSerAr : 162 !:!! ! !:!! !!!!: !||| !|||||||||||||||:::||| !||||||||||| PheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerAr 1595 : TTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCGCG : 1655 163 : gProLysSerProLeuTyrMetValGluPheTyrIleAspGlnAspLysTyrPheTyrSerV : 183 | ! ..! !:!!||| !.! ! !:! !:!!|||:!!!!::!!:!!!:!|||! !: gGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrIleL 1656 : TGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAGGAACATTATTACATTC : 1718 184 : alLeuThrHisAlaTyrIleThrSerLeuAlaGlyValLeuProLeuPheAlaThrAspLeu : 203 !!:!! !||| ! ! !..!! ! !!.!! ! !!!!! !! !.!!:!! !||| ! euMetGlyHisMetLeuCysValIleThrValValPhePheValTyrIleSerCysAspThr 1719 : TGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTCTACATCTCCTGTGACACG : 1778 204 : LeuPheSerAsnCysAlaHisHisAlaCysGlyIleIleLysIleLeuGly : 220 :!!!:!! !||| !!.!!!.||||||||||||:!!:!:!!.:!!! !||| IleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnValSerGly 1779 : ATCTACATGAATATCGTGCAACACGCGTGCGGATTACTGAACGTCTCTGGG : 1831 vulgar: NvOr198 141 220 . LHQN01025741.1 1594 1831 + 122 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1595 1831 122 + . gene_id 2 ; sequence NvOr198 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1595 1831 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1595 1831 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1595 1831 122 + . alignment_id 2 ; Query NvOr198 ; Align 1595 142 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 139 -> 218 Target range: 1224 -> 987 140 : TyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgProLeuAsnGluThrAr : 160 !:!:!!! ! ! |||!::||| !! :!!:!!:!!! ! !!:! !!! !||| !|||! PheIleGlnValProTrpThrThrArgMetValAsnSerTyrLysThrGlnAsnIleThrPr 1224 : TTCATACAAGTGCCATGGACGACCCGAATGGTGAACTCGTACAAGACACAGAATATAACGCC : 1164 161 : gProArgGlnLeuIleTyrMetValGluPhePheIleAspGluAspLysTyrPheTyrGluI : 181 ! ! !! !:!!:!! ! ! ! !:!|||:!!||||||! :!!|||!:!||| ! | oSerLeuProValValValProGlyTyrTyrPheValAspGluValGluTyrTyrTyrTyrI 1163 : AAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGAATACTATTATTACA : 1101 182 : leGlnIleHisSerTyrAlaThrThrLeuIleGlyPheIleProLeuIleSerIleAspThr : 201 || !:!!|||.!! ..!|||..!||||||! ! ! :!: !! ! !:!! !|||||| leIleLeuHisGlyThrCysThrValLeuIleValValValValTyrCysAlaCysAspThr 1100 : TCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTGCCTGCGACACC : 1041 202 : PheTyrAlaAlaSerValGlnHisAlaCysGlyMetPheAlaIleLeuGly : 218 !||| !!.! !|||||||||.!!||||||:!!||||||:!: !||| SerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly 1040 : AGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 988 vulgar: NvOr204 139 218 . LHQN01027734.1 1224 987 - 126 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 988 1224 126 - . gene_id 1 ; sequence NvOr204 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 988 1224 . - . LHQN01027734.1 exonerate:protein2genome:local exon 988 1224 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 988 1224 126 - . alignment_id 1 ; Query NvOr204 ; Align 1225 140 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr203 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 157 Query range: 138 -> 217 Target range: 5657 -> 5420 139 : TyrMetValLeuProLeuThrProIleIleLeuAspPheIleValProLeuAsnGluSerAr : 159 !:!||| !||||||!!!..! !! |||||||||.!!:!!:!!||||||||||||!!!|| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5657 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5597 160 : gProLysGlnProLeuIleMetAlaGluPhePheIleAspGlnAspLysTyrPheTyrProL : 180 | !!::! ! !:!! ! ||| ! !:!|||:!!|||:!!||||||||| !||| !: gAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuI 5596 : AGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGA : 5534 181 : euMetIleHisAlaTyrLeuSerValLeuTyrGlyIleIleProLeuLeuGlyThrAspThr : 200 !!:!: ||| !|||||| !|||:!! !||| ! !!!!! !!.! !|||.!! leValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 5533 : TCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 5474 201 : LeuTyrMetAsnCysValHisHisSerCysGlyMetLeuLysIleLeuGly : 217 !|||:!! !!..!|||!!.|||:!!||||||:!!||| ||| !||| AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5473 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5421 vulgar: NvOr203 138 217 . LHQN01028732.1 5657 5420 - 157 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5657 157 - . gene_id 1 ; sequence NvOr203 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5657 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5657 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5657 157 - . alignment_id 1 ; Query NvOr203 ; Align 5658 139 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr211 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 144 -> 225 Target range: 5663 -> 5420 145 : AlaThrTyrSerLeuGluProLeuValProGlnIleLeuAspLysLeuSerProLeuAsnGl : 165 ||| !!:!! !! ! !|||!!!||| !!! !|||||||||! |||! !||||||||||| AlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGl 5663 : GCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGA : 5603 166 : uSerArgProIleLysThrPheLeuGluValGluTyrLeuValAspHisArgArgTyrTyrT : 186 |!!!||| !! ! ! !!! ! !!.! ! |||!!!||||||.!. !!:!||| ! uThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgT 5602 : GACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTT : 5540 187 : hrAlaIleTyrLeuHisAsnMetGlnAlaAlaCysTrpValIleLeuThrValLeuAlaIle : 206 ! !||| !|||! ! !.!!.! !:!!|||! !..! !!! !||| ! yrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCys 5539 : ACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGC : 5480 207 : AspAlaTyrPheValMetIleValGlnHisAlaCysSerMetPheAlaValLeuGly : 225 |||||| !!!:!||| !|||||||||||||||.!!:!!!!.|||:!! !||| AspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5479 : GATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5421 vulgar: NvOr211 144 225 . LHQN01028732.1 5663 5420 - 119 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5663 119 - . gene_id 1 ; sequence NvOr211 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5663 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5663 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5663 119 - . alignment_id 1 ; Query NvOr211 ; Align 5664 145 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 174 Query range: 139 -> 218 Target range: 5657 -> 5420 140 : TyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgProLeuAsnGluThrAr : 160 !:!:!!! !!!.||||||..! !! :!!||||||:!!:!!! !||||||||||||||||| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5657 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5597 161 : gProArgGlnLeuIleTyrMetValGluPhePheIleAspGluAspLysTyrPheTyrGluI : 181 | !!||| !!!!:!!||| !.! ! !:!|||:!!||||||||||||||| !||| !| gAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuI 5596 : AGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGA : 5534 182 : leGlnIleHisSerTyrAlaThrThrLeuIleGlyPheIleProLeuIleSerIleAspThr : 201 || ! |||! !||| !..!..!:!!!!: !.!! ! !!!! !:!! !|||.!! leValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 5533 : TCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 5474 202 : PheTyrAlaAlaSerValGlnHisAlaCysGlyMetPheAlaIleLeuGly : 218 !|||!.! !:!!||||||||||||||||||:!!!!.|||||| !||| AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5473 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5421 vulgar: NvOr204 139 218 . LHQN01028732.1 5657 5420 - 174 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5657 174 - . gene_id 1 ; sequence NvOr204 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5657 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5657 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5657 174 - . alignment_id 1 ; Query NvOr204 ; Align 5658 140 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr204 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 139 -> 184 Target range: 1857 -> 1722 140 : TyrLeuLeuPheProPheThrProPheValLeuAspLeuIleArgProLeuAsnGluThrAr : 160 !:!|||! ! ! ||||||.!!|||.!!:!!||||||:!! ! !|||||||||:!!||||| PheLeuCysValProPheAlaProIleIleLeuAspIleCysAlaProLeuAsnLysThrAr 1857 : TTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTGCGCGCCACTGAACAAAACGAG : 1797 161 : gProArgGlnLeuIleTyrMetValGluPhePheIleAspGluAspLysTyrPheTyrGluI : 181 | !||| !!!!:!!||| !.! ! !:!!::!!:||| !!::!!|||!:! !! gLysArgValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMetIleM 1796 : AAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATGATAA : 1734 182 : leGlnIleHis : 184 !: !|||||| etIleIleHis 1733 : TGATAATACAC : 1723 vulgar: NvOr204 139 184 . LHQN01028732.1 1857 1722 - 103 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1723 1857 103 - . gene_id 2 ; sequence NvOr204 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 1723 1857 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1723 1857 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1723 1857 103 - . alignment_id 2 ; Query NvOr204 ; Align 1858 140 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr205PSE Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 145 -> 224 Target range: 5657 -> 5420 146 : TrpMetLeuLeuProLeuAlaProLeuLeuLeuAspTyrIleLysProLeuAsnGluSerAr : 166 !::|||! !||||||!!!!.! !!! !:!!|||||| !:!!! !||||||||||||!!!|| PheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrAr 5657 : TTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCG : 5597 167 : gSerLeuGlnProLeuPheMetValGluPheTyrIleAspProAspLysTyrPheTyrThrI : 187 |:!!! ! ! !:!!!:! !.! ! !:!!:!:!!||| !||||||||| !||| !| gAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuI 5596 : AGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGA : 5534 188 : leLeuAlaGlnAsnTyrValCysAlaLeuValSerProIleSerIleIleAlaMetAspLeu : 207 ||:!!!.!!!.! |||:!! !.!:!!:!! ! ! ! !.!! !||| ||| ! leValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAla 5533 : TCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCC : 5474 208 : IlePheMetAsnCysAlaAsnHisIleCysGlyMetIleTrpIleLeuGly : 224 ! !!:!:!! !!..!!.!.!.||| !||||||:!!:!: ||| !||| AsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5473 : AATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5421 vulgar: NvOr205PSE 145 224 . LHQN01028732.1 5657 5420 - 121 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5657 121 - . gene_id 1 ; sequence NvOr205PSE ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5657 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5657 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5657 121 - . alignment_id 1 ; Query NvOr205PSE ; Align 5658 146 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr201 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 136 Query range: 131 -> 217 Target range: 5678 -> 5420 132 : ValThrValIleLeuLeuSerTyrMetLeuIleProMetLeuProAlaAlaLeuAspLeuVa : 152 :!!:!!:!! ! ! ! !!:!|||! !:!:|||.!.:!! !! !! !||||||:!!:! IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLe 5678 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCT : 5618 153 : lAsnProLeuAsnGluSerArgProThrSerProLeuTyrLeuValGluLeuTyrIleAspG : 173 !! ||||||||||||!!!||| !! !! ! !:!!|||! !!.! ! ! !!:!:!!|||: uMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspG 5617 : TATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACG : 5555 174 : lnAspLysTyrPheTyrSerValLeuThrHisAlaTyrIleThrSerLeuAlaGlyIleLeu : 193 !!||||||||| !|||! !:!!:!! !||| !|||:!!..! !:!! ! !|||! ! luAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSer 5554 : AGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCT : 5495 194 : ProLeuPheAlaIleAspSerLeuPheSerSerCysAlaHisHisAlaCysGlyMetIleGl : 214 !!!!! !||| !|||:!! !!:! !! !..!!.!!!.||||||||||||:!!:!:! ValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAl 5494 : GTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGC : 5432 215 : uIleLeuGly : 217 ||| !||| aIleAlaGly 5431 : CATTGCAGGG : 5421 vulgar: NvOr201 131 217 . LHQN01028732.1 5678 5420 - 136 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5678 136 - . gene_id 1 ; sequence NvOr201 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5678 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5678 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5678 136 - . alignment_id 1 ; Query NvOr201 ; Align 5679 132 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr198 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 159 Query range: 134 -> 237 Target range: 5678 -> 5369 135 : ValAlaValValLeuLeuSerTyrMetLeuLeuProMetLeuProAlaValLeuAspLeuIl : 155 :!!:!!:!! ! ! ! !!:!|||! !||||||.!.:!! !! !!:!!||||||:!!:! IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLe 5678 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCT : 5618 156 : eAsnProLeuAsnGluSerArgProLysSerProLeuTyrMetValGluPheTyrIleAspG : 176 !! ||||||||||||!!!||| !!::!! ! !:!!||| !.! ! !:!!:!:!!|||: uMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspG 5617 : TATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACG : 5555 177 : lnAspLysTyrPheTyrSerValLeuThrHisAlaTyrIleThrSerLeuAlaGlyValLeu : 196 !!||||||||| !|||! !:!!:!! !||| !|||:!!..! !:!! ! !:!!! ! luAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSer 5554 : AGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCT : 5495 197 : ProLeuPheAlaThrAspLeuLeuPheSerAsnCysAlaHisHisAlaCysGlyIleIleLy : 217 !!!!! !||| !||| ! !!:! ! !!..!!.!!!.||||||||||||:!::!: ValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAl 5494 : GTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGC : 5432 218 : sIleLeuGlyArgArgIleGluAsnIleLeuSerGluGluProAlaLeuLysArgSerTyr : 237 ||| !||| ! !:!!:!!... !|||! !|||.!. ! !||| ! |||!:!!:! aIleAlaGly***LeuValGlnGlyGlnLeuMetGluAsnGlyPheLeuTyrArgAsnPhe 5431 : CATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAATGGTTTTCTTTATAGAAATTTC : 5370 vulgar: NvOr198 134 237 . LHQN01028732.1 5678 5369 - 159 M 103 309 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5370 5678 159 - . gene_id 1 ; sequence NvOr198 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5370 5678 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5370 5678 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5370 5678 159 - . alignment_id 1 ; Query NvOr198 ; Align 5679 135 309 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr216 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 137 -> 228 Target range: 20580 -> 20319 138 : TyrAlaIleIleAlaThrThrLeuPheTyrValLeuProPheLeuThrIleValIleAsp : 157 :!! !.!!:!! !!.!!.!!:!!|||! !:!!|||||| ! !!|||:!!:!:||| HisLeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAsp 20580 : CATTTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGAC : 20523 158 : ArgIleLysProLeuGluAsnGlyThrArgPheArgAlaGlnProTyrHisGlnHisTyr : 177 ! ! ! !|||||| ||| !|||||| |||!.! !|||! :!!||| IleTyrAlaProLeu---AsnLysThrArgLysArgValPheValTyrProAlaTyrTyr 20522 : ATTTACGCGCCACTG---AACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTAC : 20466 178 : PheAspLeuIleAspAsnGluLysTyrTyrTyrHisMetTyrIleGlyHisGlyTyrVal : 197 !:: !!:||| !|||:!!|||||| ||| ||| ||| ! !! Trp------MetAspProGluGlnTyrTyrMetIleMetIleIle---HisIleMetPhe 20465 : TGG------ATGGATCCTGAGCAATACTACATGATAATGATAATA---CACATAATGTTC : 20415 198 : ValSerIleIleValThrValAlaValMetAlaIleAspThrMetTyrAlaAlaAsnIle : 217 ||| !|||!!:||| !||| ! !! ||| !|||! !! |||!.! ! !:!: ValValIleMetValCysValIlePheCysAlaCysAspMetAsnTyrValTyrAlaVal 20414 : GTGGTGATCATGGTCTGTGTCATATTCTGTGCTTGCGACATGAACTACGTGTACGCTGTG : 20355 218 : GlnHisAlaCysGlyLeuPheAlaIleValArg : 228 ||||||||||||||||||!!.|||:!!..!||| GlnHisAlaCysGlyLeuLeuAlaValThrArg 20354 : CAGCACGCATGCGGCTTATTGGCTGTCACCAGG : 20320 vulgar: NvOr216 137 228 . KQ414772.1 20580 20319 - 106 M 25 75 G 1 0 M 15 45 G 2 0 M 12 36 G 1 0 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20320 20580 106 - . gene_id 1 ; sequence NvOr216 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20320 20580 . - . KQ414772.1 exonerate:protein2genome:local exon 20320 20580 . - . insertions 0 ; deletions 4 KQ414772.1 exonerate:protein2genome:local similarity 20320 20580 106 - . alignment_id 1 ; Query NvOr216 ; Align 20581 138 75 ; Align 20506 164 45 ; Align 20461 181 36 ; Align 20425 194 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr216 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 182 -> 226 Target range: 17940 -> 17808 183 : AsnGluLysTyrTyrTyrHisMetTyrIleGlyHisGlyTyrValValSerIleIleVal : 202 :!!||| ! ! ||||||:!! !||| !|||||| !..!! !:!:|||||| AspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIleLeuIleVal 17940 : GACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATTTTGATTGTA : 17883 203 : ThrValAlaValMetAlaIleAspThrMetTyrAlaAlaAsnIleGlnHisAlaCysGly : 222 ..!|||!.! ! ||| !||||||! ||| !!.! :!:||||||.!!|||||| ValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGly 17882 : GTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGA : 17823 223 : LeuPheAlaIle : 226 |||||||||:!: LeuPheAlaVal 17822 : CTGTTCGCCGTG : 17809 vulgar: NvOr216 182 226 . KQ414772.1 17940 17808 - 101 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17809 17940 101 - . gene_id 2 ; sequence NvOr216 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17809 17940 . - . KQ414772.1 exonerate:protein2genome:local exon 17809 17940 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 17809 17940 101 - . alignment_id 2 ; Query NvOr216 ; Align 17941 183 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr217 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 340 -> 398 Target range: 28146 -> 27972 341 : AspSerThrGluGlnIlePheLeuAlaAlaCysGluThrCysTrpTyrAsnLeuSerVal : 360 .!.!:!! !:!!:!!:!:|||:!! ! !|||! .!! ||||||||| !!!! ! GlnAsnIleGlnLysLeuPheValArgArgCysAlaAlaThrTrpTyrAsnSerThrSer 28146 : CAAAACATTCAGAAGTTGTTCGTTCGCAGATGCGCTGCAACATGGTACAACAGTACATCT : 28089 361 : LysGlyGlnLysLeuValTyrPheMetMetGlnLysAsnIleIleProLeuThrLeuThr : 380 !:! !||| ||| ! .!. :!!::!!:!|||:!:! !|||! ! !:!!||| ArgThrGlnAlaLeuTyrMetLeuAlaLeuArgArgAsnLeuThrProProLeuIleThr 28088 : AGAACGCAAGCTTTGTACATGCTAGCTTTGAGAAGGAACTTGACACCACCACTGATCACC : 28029 381 : AlaGlyGlyIleAlaGluLeuAsnPheGlnGlnPheAlaSerValSerLysThr : 398 |||||||||:!: !...||||||!!.:!! ||||||..!|||||| !||| AlaGlyGlyLeuIleSerLeuAsnLeuGluThrPheAlaGluValSerValThr 28028 : GCCGGAGGACTGATTTCCTTGAATTTGGAGACCTTCGCGGAGGTAAGTGTAACA : 27973 vulgar: NvOr217 340 398 . KQ414772.1 28146 27972 - 114 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 27973 28146 114 - . gene_id 1 ; sequence NvOr217 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 27973 28146 . - . KQ414772.1 exonerate:protein2genome:local exon 27973 28146 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 27973 28146 114 - . alignment_id 1 ; Query NvOr217 ; Align 28147 341 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr217 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 351 -> 400 Target range: 16776 -> 16629 352 : GluThrCysTrpTyrAsnLeuSerValLysGlyGlnLysLeuValTyrPheMetMetGln : 371 |||:!!! ||||||!.. !||| !||| !||| !||| ! ! !:!:!:! GluSerLeuTrpTyrThrSerSerSerLysThrGlnAlaLeuTyrValValAlaLeuArg 16776 : GAATCATTATGGTACACAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCGTTACGA : 16719 372 : LysAsnIleIleProLeuThrLeuThrAlaGlyGlyIleAlaGluLeuAsnPheGlnGln : 391 !:!|||:!!! !||| ! !|||||||||||||||:!!!.!:!!||||||.!.|||... ArgAsnLeuThrProThrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMetGlnSer 16718 : AGAAACCTAACACCTACCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATGCAAAGC : 16659 392 : PheAlaSerValSerLysThrSerMet : 400 ||||||..!|||!:!! |||!.!!!: PheAlaGluValAsnIleThrLysIle 16658 : TTCGCAGAGGTAAACATCACCAAAATT : 16630 vulgar: NvOr217 351 400 . KQ414772.1 16776 16629 - 109 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 16630 16776 109 - . gene_id 2 ; sequence NvOr217 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 16630 16776 . - . KQ414772.1 exonerate:protein2genome:local exon 16630 16776 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 16630 16776 109 - . alignment_id 2 ; Query NvOr217 ; Align 16777 352 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr217 Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 343 -> 398 Target range: 35630 -> 35465 344 : GluGlnIlePheLeuAlaAlaCysGluThrCysTrpTyrAsnLeuSerValLysGlyGln : 363 :!!:!!:!:|||:!! ! !! !....!! ||||||||| !||| !!:! !||| GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGln 35630 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAA : 35573 364 : LysLeuValTyrPheMetMetGlnLysAsnIleIleProLeuThrLeuThrAlaGlyGly : 383 ! ||| ! .!. :!!::!!:!!:!:!:! !|||! ! !||||||||||||||| ThrLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGly 35572 : ACTCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGA : 35513 384 : IleAlaGluLeuAsnPheGlnGlnPheAlaSerValSerLysThr : 398 :!: !...||||||!!.:!! ||||||..!|||!:!! !||| LeuIleSerLeuAsnLeuGluThrPheAlaGluValAsnMetThr 35512 : CTGATTTCCTTGAATTTGGAGACTTTTGCCGAGGTAAATATGACA : 35466 vulgar: NvOr217 343 398 . KQ414772.1 35630 35465 - 101 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 35466 35630 101 - . gene_id 3 ; sequence NvOr217 ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 35466 35630 . - . KQ414772.1 exonerate:protein2genome:local exon 35466 35630 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 35466 35630 101 - . alignment_id 3 ; Query NvOr217 ; Align 35631 344 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr216 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 140 -> 226 Target range: 26240 -> 25994 141 : IleAlaThrThrLeuPheTyrValLeuProPheLeuThrIleValIleAspArgIleLys : 160 :!!..!.!!.!!|||||| !|||||||||:!!:!! :!!:!:|||! !:!!! ! LeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMet 26240 : TTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATG : 26183 161 : ProLeuGluAsnGlyThrArgPheArgAlaGlnProTyrHisGlnHisTyrPheAspLeu : 180 |||||| |||! !|||||| ||| ! !|||! :!!|||||| ProLeu---AsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPhe------ 26182 : CCGTTG---AACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTC------ : 26129 181 : IleAspAsnGluLysTyrTyrTyrHisMetTyrIleGlyHisGlyTyrValValSerIle : 200 :!!|||.!.!!:||||||:!!||| :!! !:!!|||||| !|||:!!||| !:!! ValAspGluAspLysTyrHisTyr---LeuIleValGlyHisMetTyrLeuValValVal 26128 : GTCGACGAGGACAAATATCATTAC---TTGATCGTAGGGCATATGTATCTTGTAGTGGTA : 26075 201 : IleValThrValAlaValMetAlaIleAspThrMetTyrAlaAlaAsnIleGlnHisAla : 220 !!::!!! ! !!.! !! ||| !|||.!!! |||!.! ! !:!:||||||||| MetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAla 26074 : ATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCT : 26015 221 : CysGlyLeuPheAlaIle : 226 |||||||||!!.|||||| CysGlyLeuLeuAlaIle 26014 : TGCGGATTGTTGGCCATT : 25995 vulgar: NvOr216 140 226 . LHQN01017803.1 26240 25994 - 128 M 22 66 G 1 0 M 15 45 G 2 0 M 8 24 G 1 0 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25995 26240 128 - . gene_id 1 ; sequence NvOr216 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25995 26240 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25995 26240 . - . insertions 0 ; deletions 4 LHQN01017803.1 exonerate:protein2genome:local similarity 25995 26240 128 - . alignment_id 1 ; Query NvOr216 ; Align 26241 141 66 ; Align 26175 164 45 ; Align 26130 181 24 ; Align 26106 190 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr216 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 182 -> 226 Target range: 18324 -> 18192 183 : AsnGluLysTyrTyrTyrHisMetTyrIleGlyHisGlyTyrValValSerIleIleVal : 202 :!!||| ! ! ||||||:!! !||| !|||||| !..!! !:!:|||||| AspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIleLeuIleVal 18324 : GACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATTTTGATTGTA : 18267 203 : ThrValAlaValMetAlaIleAspThrMetTyrAlaAlaAsnIleGlnHisAlaCysGly : 222 ..!|||!.! ! ||| !||||||! ||| !!.! :!:||||||.!!|||||| ValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGly 18266 : GTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGA : 18207 223 : LeuPheAlaIle : 226 |||||||||:!: LeuPheAlaVal 18206 : CTGTTCGCCGTG : 18193 vulgar: NvOr216 182 226 . LHQN01017803.1 18324 18192 - 101 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18193 18324 101 - . gene_id 2 ; sequence NvOr216 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18193 18324 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18193 18324 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 18193 18324 101 - . alignment_id 2 ; Query NvOr216 ; Align 18325 183 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr217 Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 351 -> 400 Target range: 17160 -> 17013 352 : GluThrCysTrpTyrAsnLeuSerValLysGlyGlnLysLeuValTyrPheMetMetGln : 371 |||:!!! ||||||!.. !||| !||| !||| !||| ! ! !:!:!:! GluSerLeuTrpTyrThrSerSerSerLysThrGlnAlaLeuTyrValValAlaLeuArg 17160 : GAATCATTATGGTACACAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCGTTACGA : 17103 372 : LysAsnIleIleProLeuThrLeuThrAlaGlyGlyIleAlaGluLeuAsnPheGlnGln : 391 !:!|||:!!! !||| ! !|||||||||||||||:!!!.!:!!||||||.!.|||... ArgAsnLeuThrProThrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMetGlnSer 17102 : AGAAACCTAACACCTACCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATGCAAAGC : 17043 392 : PheAlaSerValSerLysThrSerMet : 400 ||||||..!|||!:!! |||!.!!!: PheAlaGluValAsnIleThrLysIle 17042 : TTCGCAGAGGTAAACATCACCAAAATT : 17014 vulgar: NvOr217 351 400 . LHQN01017803.1 17160 17013 - 109 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 17014 17160 109 - . gene_id 1 ; sequence NvOr217 ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 17014 17160 . - . LHQN01017803.1 exonerate:protein2genome:local exon 17014 17160 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 17014 17160 109 - . alignment_id 1 ; Query NvOr217 ; Align 17161 352 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr216 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 345 -> 390 Target range: 1222505 -> 1222370 346 : TyrSerAsnArgTrpTyrAsnLeuSerIleLysGlyGlnLysLeuIleTyrSerLe : 364 |||:!!::!!:!||||||.!.||| !!:!!|||||||||||||||||||||!!!:! TyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTyrThrMe 1222505 : TACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTACACGAT : 1222451 365 : uLeuGlnSerAsnAlaAsnSerValThrLeuArgAlaGlyGlyIleAlaGluMetA : 383 !! !..!!!!::! !... !! !! !|||! !|||||||||:!: !||||||| tGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisGluMetA 1222450 : GCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATGAGATGA : 1222394 384 : snLeuGlnGlnPheAlaAlaIle : 390 ||:!!:!!...|||!.! !:!! snIleGluSerPheGlyIleVal 1222393 : ACATCGAGAGTTTCGGAATAGTA : 1222371 vulgar: NvOr216 345 390 . KQ414851.1 1222505 1222370 - 116 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222371 1222505 116 - . gene_id 1 ; sequence NvOr216 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1222371 1222505 . - . KQ414851.1 exonerate:protein2genome:local exon 1222371 1222505 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222371 1222505 116 - . alignment_id 1 ; Query NvOr216 ; Align 1222506 346 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr216 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 142 -> 226 Target range: 1243845 -> 1243605 143 : ThrThrLeuPheTyrValLeuProPheLeuThrIleValIleAspArgIleLysPr : 161 :!!! !:!!||| :!!!!!|||!!.:!! !! !:!!:!:||| !:!!..!|| SerIleIlePheValLeuPheProLeuIleProProIleLeuAspValValSerPr 1243845 : TCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACC : 1243791 162 : oLeuGluAsnGlyThrArgPheArgAlaGlnProTyrHisGlnHisTyrPheAspL : 180 |||| |||! !||||||! !||| !::: ...||| | oLeu---AsnGluThrArgSerArgIleGluValIleLysLeuGlnTyr------L 1243790 : GCTT---AATGAGACTCGATCTCGGATAGaagtaataaaattgcaatac------c : 1243743 181 : euIleAspAsnGluLysTyrTyrTyrHisMetTyrIleGlyHisGlyTyrValVal : 198 ||.!!|||! |||||| :::||| :::|||:!! ! !|||!:: ! euPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrp---Cys 1243742 : TGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGCTGG---TGC : 1243692 199 : SerIleIleValThrValAlaValMetAlaIleAspThrMetTyrAlaAlaAsnIl : 217 |||.!!!!:..!! !:!!!.!:!!!!:.!!||||||.!!:!:|||!.!!.!! !|| SerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValValIleIl 1243691 : TCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCAT : 1243635 218 : eGlnHisAlaCysGlyLeuPheAlaIle : 226 |!!.|||.!!|||||||||||||||:!! eHisHisThrCysGlyLeuPheAlaVal 1243634 : TCATCACACGTGTGGCTTATTCGCTGTT : 1243606 vulgar: NvOr216 142 226 . KQ414851.1 1243845 1243605 - 100 M 20 60 G 1 0 M 14 42 G 2 0 M 17 51 G 1 0 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243606 1243845 100 - . gene_id 2 ; sequence NvOr216 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243606 1243845 . - . KQ414851.1 exonerate:protein2genome:local exon 1243606 1243845 . - . insertions 0 ; deletions 4 KQ414851.1 exonerate:protein2genome:local similarity 1243606 1243845 100 - . alignment_id 2 ; Query NvOr216 ; Align 1243846 143 60 ; Align 1243786 164 42 ; Align 1243744 180 51 ; Align 1243693 198 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr217 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 354 -> 395 Target range: 1222493 -> 1222370 355 : TrpTyrAsnLeuSerValLysGlyGlnLysLeuValTyrPheMetMetGlnLysAs : 373 ||||||.!.||| !!||||||||||||||||||:!!||| |||.....!!:!:: TrpTyrGluLeuProValLysGlyGlnLysLeuIleTyrThrMetGlnMetArgSe 1222493 : TGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTACACGATGCAAATGAGGTC : 1222439 374 : nIleIleProLeuThrLeuThrAlaGlyGlyIleAlaGluLeuAsnPheGlnGlnP : 392 !||| |||! !! !|||||||||||||||:!: !|||:!!|||.!!:!!...| rIleArgProCysIleLeuThrAlaGlyGlyValHisGluMetAsnIleGluSerP 1222438 : CATACGGCCATGTATATTAACAGCAGGAGGAGTGCATGAGATGAACATCGAGAGTT : 1222382 393 : heAlaSerVal : 395 ||!.!! !||| heGlyIleVal 1222381 : TCGGAATAGTA : 1222371 vulgar: NvOr217 354 395 . KQ414851.1 1222493 1222370 - 121 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222371 1222493 121 - . gene_id 1 ; sequence NvOr217 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1222371 1222493 . - . KQ414851.1 exonerate:protein2genome:local exon 1222371 1222493 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222371 1222493 121 - . alignment_id 1 ; Query NvOr217 ; Align 1222494 355 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr217 Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 351 -> 395 Target range: 1228542 -> 1228410 352 : GluThrCysTrpTyrAsnLeuSerValLysGlyGlnLysLeuValTyrPheMetMe : 370 ...:!! ||||||!!.:!!|||!.!||| !|||::!:!!:!!|||.!.|||.. SerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMetGl 1228542 : TCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGATGCA : 1228488 371 : tGlnLysAsnIleIleProLeuThrLeuThrAlaGlyGlyIleAlaGluLeuAsnP : 389 . !!:! !:!!! |||! !! !|||||||||||||||:!: !|||:!!|||. nIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetAsnM 1228487 : AATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGAACA : 1228431 390 : heGlnGlnPheAlaSerVal : 395 !.:!!.!.||||||!:!||| etGluAsnPheAlaAsnVal 1228430 : TGGAGAACTTTGCAAACGTT : 1228411 vulgar: NvOr217 351 395 . KQ414851.1 1228542 1228410 - 104 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228411 1228542 104 - . gene_id 2 ; sequence NvOr217 ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228411 1228542 . - . KQ414851.1 exonerate:protein2genome:local exon 1228411 1228542 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228411 1228542 104 - . alignment_id 2 ; Query NvOr217 ; Align 1228543 352 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr217 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 78 -> 148 Target range: 208413 -> 208623 79 : GlyLeuLeuTyrLeuThrValAlaSerSerLysTyrPheThrTyrSerValPheGluG : 98 !.!||| !!:!!!!! !:!!|||! !!!!|||||| ! ! ! !!!||| !|||| AlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluG 208414 : GCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGG : 208471 99 : lyArgIleLeuArgLeuTyrHisGlnValGlyGluAspTrpArgThrThrThrAspGl : 117 || !|||! !!:!! ! !.!. ! |||! !! |||||||||!.!..! ! !!|| lyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGl 208472 : GTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGA : 208528 118 : uGluGluArgLysIleLeuGlnGluTyrSerGluPheAlaArgLeuLeuSerIleIle : 136 ||||!!:|||||||||:!! !!!: !!:!!...||||||||| !|||! !:!:||| uGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIle 208529 : GGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATA : 208585 137 : TyrPheValTyrAlaAlaIleGlyAlaPheTyrPhe : 148 ! ! !.!!:! ! ! !|||......:::::: CysGlyAlaPheMetTyrGlyGlyValIlePheTyr 208586 : TGCGGAGCTTTCATGTACGGAGGtgtaattttctat : 208623 vulgar: NvOr217 78 148 . KQ414889.1 208413 208623 + 102 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208414 208623 102 + . gene_id 1 ; sequence NvOr217 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208414 208623 . + . KQ414889.1 exonerate:protein2genome:local exon 208414 208623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208414 208623 102 + . alignment_id 1 ; Query NvOr217 ; Align 208414 79 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr216 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 78 -> 240 Target range: 194372 -> 194849 79 : IleTyrLeuSerValThrTrpIleLysTyrValThrSerTyrIlePheGluSerArgI : 98 :!:!:! ! !:!!.!! ||||||!:! !|||! ! !:!: !..!!.!..!| ValPheSerLeuLeuAlaIleIleLysPheTrpThrMetIleValAsnArgLysGluI 194373 : GTGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGA : 194430 99 : leLysLeuIleTyrGluGlnIleAlaAlaAspTrpLysSerLeuIleAspGluGluGl : 117 ||!:!!!! ! !:!!!!:! !.!!.!.!::!:!..!:!! !||||||!! leArgPheCysLeuLeuGluMetGluThrGlnTyrArgAspValGluCysGluGluAs 194431 : TCAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGA : 194487 118 : uIleGlnIleLeuAsnAsnTyrSerAlaPheAlaArgLeuLeuThrValLeuTyrVal : 136 : !|||:!::!!!..|||! !:!! !.!!!.!|||!!!!!!|||..!||||||:!! pArgGlnValMetThrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeu 194488 : TCGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTG : 194544 137 : PheTyrAlaIleIleAlaThrThrLeuPheTyrValLeuProPheLeuThrIleValI : 156 !:!! ! !!.!.!! !! !!:!:!!:!!:!! ||| !!:!::!! GlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIle------LeuProLeuMetS 194545 : GGACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATT------CTACCTCTGATGT : 194598 157 : leAspArgIleLysProLeuGluAsnGlyThrArgPheArgAlaGlnProTyrHisGl : 175 !!:|||||| ! !!!:|||.!!|||!:!.!.! ! !! ! !! !.! erGluArgIleValLysGluAspAsnSerThrGlnIleProLeuProTyrLeuSerAs 194599 : CGGAGAGGATTGTCAAGGAGGATAACAGTACTCAGATACCTCTGCCATATTTGAGCAA : 194655 176 : nHisTyrPheAspLeuIleAspAsnGluLysTyrTyrTyrHisMetTyrIleGlyHis : 194 .:!! !||| ! !|||!!::!!..! ! !||| ! !! !:!:!!..!!!. nTyrValPhePheAlaIleGluAspSerProIleTyrGluIleThrPheValSerGln 194656 : CTATGTTTTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAG : 194712 195 : GlyTyrValValSerIleIleValThrValAlaValMetAlaIleAspThrMetTyrA : 214 ! :!! !|||||||||:!!:!!..! ! !.!||| !!!:!:!! !| IleLeuIleSerSerIleIleLeuSerThrAsn---CysGlyIleTyrSerLeuValA 194713 : ATACTGATTAGCAGCATCATATTGTCGACGAAT---TGTGGGATTTATAGTTTGGTCG : 194769 215 : laAlaAsnIleGlnHisAlaCysGlyLeuPheAlaIleValArgHisArgLeuSerLy : 233 ||.!!! !|||..!|||..!||||||||||||! !:!:..!!!!...|||:!!..!! laThrIleIleMetHisCysCysGlyLeuPheGluValThrSerArgArgMetGluTh 194770 : CTACTATTATTATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGATGGAGAC : 194826 234 : sIleGlyIleLeuAsnGlyGlu : 240 |||..!:!:! !!.!|||:!! rIleSerValProThrGlyLys 194827 : TATTTCTGTGCCCACTGGGAAG : 194849 vulgar: NvOr216 78 240 . KQ414889.1 194372 194849 + 108 M 71 213 G 2 0 M 54 162 G 1 0 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194373 194849 108 + . gene_id 1 ; sequence NvOr216 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194373 194849 . + . KQ414889.1 exonerate:protein2genome:local exon 194373 194849 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 194373 194849 108 + . alignment_id 1 ; Query NvOr216 ; Align 194373 79 213 ; Align 194586 152 162 ; Align 194748 207 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr230 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 343 -> 386 Target range: 117863 -> 118062 344 : PheValMetLeuArgAlaAsnArgProValGlnIleThrAlaGlyGlyTyrMetLysL : 363 .!.:!!|||:!!|||!.!.!.!:!||||||!:::!:||||||||| ! !:!: !| MetLeuMetIleArgGlyGlnLysProValArgLeuThrAlaGlyLysIleValGlyL 117864 : ATGCTGATGATCAGAGGTCAGAAACCGGTTCGTCTGACCGCCGGAAAAATCGTCGGAC : 117921 364 : euSerLeuGluThrPheLysArg >>>> Target Intron 1 >>>> MetLeu : 372 ||||||||||||||||| ! 70 bp |||:!! euSerLeuGluThrPheAlaSer++ ++MetIle 117922 : TCTCTCTGGAAACGTTTGCCTCTgt.........................agATGATA : 118018 373 : ThrSerAlaLeuSerPhePheThrValLeuArgSerIleAsn : 386 :!!||||||:!!|||||||||||||||:!!|||!!!!!:||| SerSerAlaValSerPhePheThrValValArgThrMetAsn 118019 : TCGTCGGCCGTGTCCTTCTTCACCGTCGTTCGAACCATGAAT : 118062 vulgar: NvOr230 343 386 . KQ414940.1 117863 118062 + 104 M 27 81 5 0 2 I 0 66 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 117864 118062 104 + . gene_id 1 ; sequence NvOr230 ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 117864 117944 . + . KQ414940.1 exonerate:protein2genome:local exon 117864 117944 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 117945 117946 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 117945 118014 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 118013 118014 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 118015 118062 . + . KQ414940.1 exonerate:protein2genome:local exon 118015 118062 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 117864 118062 104 + . alignment_id 1 ; Query NvOr230 ; Align 117864 344 81 ; Align 118015 371 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr230 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 240 -> 283 Target range: 117441 -> 117570 241 : SerCysValLysPheHisGlnLysIleMetArgPheCysGlnAspIleGluLysLeuT : 260 ||| ! !:::!!.:!!! ! ! |||.!.|||||||||||||||||||||::::!!| SerIleArgArgLeuTyrLeuAspIlePheArgPheCysGlnAspIleGluArgValT 117442 : TCGATTCGCCGCTTGTATCTGGACATTTTCAGGTTTTGCCAGGACATCGAACGTGTTA : 117499 261 : hrSerSerValLeuLeuValGlnValValCysThrAlaTyrAsnIleSerLeuValGl : 279 ||!:! !:!!!!!!!!..!|||:!! !! !!!:!.!!|||||||||||||||||||| hrAsnValMetPhePheThrGlnLeuPheGlySerThrTyrAsnIleSerLeuValGl 117500 : CGAACGTGATGTTTTTCACGCAGCTGTTCGGTAGCACGTACAACATATCTTTAGTGGG : 117556 280 : yPheArgIleLeu : 283 ||||!:!:!::!! yPheLysLeuIle 117557 : CTTCAAGTTGATC : 117570 vulgar: NvOr230 240 283 . KQ414940.1 117441 117570 + 103 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 117442 117570 103 + . gene_id 2 ; sequence NvOr230 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 117442 117570 . + . KQ414940.1 exonerate:protein2genome:local exon 117442 117570 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 117442 117570 103 + . alignment_id 2 ; Query NvOr230 ; Align 117442 241 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr228PSE Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 172 -> 235 Target range: 117145 -> 117334 173 : ArgMetLeuProTyrArgPhePheLeuGluIleGlnGluGluProAlaPheSerIleV : 192 ||| ||||||||| !||||||||||||:!:|||:!! !||| !!:!..!|||. ArgArgLeuProTyrValPhePheLeuGluValGlnGlnThrProTrpTyrGluIleT 117146 : AGACGTTTGCCGTACGTGTTCTTTCTTGAGGTGCAACAAACGCCGTGGTACGAGATCA : 117203 193 : alTyrValMetGlnIleValValValTyrPheValAsnThrMetPheAlaSerValGl : 211 .!! !!.!:!:|||:!: !!!.!:!!! !|||..!! !! ! !!.!.!!|||!! hrCysAlaLeuGlnLeuPheAlaMetLeuAsnValGlyIleThrCysValGlyValAs 117204 : CTTGCGCCCTTCAGCTGTTCGCGATGTTGAACGTCGGCATCACCTGTGTCGGAGTAGA : 117260 212 : uThrValSerLeuTyrLeuIleMetMetAlaCysGlyTyrLeuArgSerIleGlnAsn : 230 :|||:!!.!!! ! !!!!:!!:!!:!:.!!|||!.!:!!!!! ! !|||!:!::! pThrIleGlyProLeuPheValLeuLeuThrCysAlaHisPheAspValIleArgSer 117261 : CACGATCGGTCCTCTCTTCGTCCTGCTCACTTGTGCTCATTTCGACGTGATTCGATCT : 117317 231 : ArgLeuLeuAsnLeu : 235 |||:!! !!:!||| ArgIleGluSerLeu 117318 : CGAATCGAGAGTTTA : 117334 vulgar: NvOr228PSE 172 235 . KQ414940.1 117145 117334 + 102 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 117146 117334 102 + . gene_id 1 ; sequence NvOr228PSE ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 117146 117334 . + . KQ414940.1 exonerate:protein2genome:local exon 117146 117334 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 117146 117334 102 + . alignment_id 1 ; Query NvOr228PSE ; Align 117146 173 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr232 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 252 -> 381 Target range: 117441 -> 117947 253 : SerCysSerLysPheHisGlnSerValLeuValLeuCysLysLysIleGluValMetT : 272 ||| ! !!:::!!.:!!! !..!:!!!!! !!!!|||:!! ! |||||| !:!:| SerIleArgArgLeuTyrLeuAspIlePheArgPheCysGlnAspIleGluArgValT 117442 : TCGATTCGCCGCTTGTATCTGGACATTTTCAGGTTTTGCCAGGACATCGAACGTGTTA : 117499 273 : hrArgMetIlePheMetValGlnLeuIleCysLeuGlyTyrAsnIleSerLeuIleGl : 291 ||!.!:!!!!:|||.!...!||||||.!! !! ! !|||||||||||||||:!:|| hrAsnValMetPhePheThrGlnLeuPheGlySerThrTyrAsnIleSerLeuValGl 117500 : CGAACGTGATGTTTTTCACGCAGCTGTTCGGTAGCACGTACAACATATCTTTAGTGGG : 117556 292 : yLeuLysLeuThrGly >>>> Target Intron 1 >>>> ThrAspProGluA : 301 |!!!||||||! !||| 122 bp !.! |||! ! yPheLysLeuIleGly++ --AsnTrpProAlaA 117557 : CTTCAAGTTGATCGGGgt.........................gcAATTGGCCCGCAG : 117708 302 : rgPheGlnTyrIleProAsnLeuValLeuCysLeuCysGlnLeuPheIleThrGlnTr : 320 !|||! ||| ! ! ! !!! |||! !:!! !.!! !! !...!: spPheLeuTyrSerLysValAsnGlnAsp***LeuSerGluThrLeuGluLysSerPh 117709 : ATTTCCTCTACTCGAAGGTAAACCAAGACTGACTCTCTGAAACCCTCGAAAAGAGTTT : 117765 321 : pAlaSerAspTyrLeuLeuGluGlnSerGluGluValAlaThrAlaAlaTyrPheAla : 339 : !! !! !|||!!!:!! |||||||||! !:!!!.! !||||||||| !.! eTyrPheValTyrPheVal---GlnSerGluAlaIleGlyArgAlaAlaTyrThrVal 117766 : CTATTTCGTCTACTTTGTT---CAGAGCGAAGCGATCGGTCGTGCAGCCTATACGGTG : 117819 340 : ThrLeuMetSerLeuAspAlaArgIleGlyGlyLeuLeuLeuThrMetValIleArgA : 359 !!! ! !!!! ! ! ! !!:!: !! !! ! ! !! !:!!:!!||||||! ProTrpHisTrpTyrProArgCysLeuArgLysProThrAsnMetLeuMetIleArgG 117820 : CCTTGGCATTGGTACCCTCGTTGCTTGCGAAAACCAACCAACATGCTGATGATCAGAG : 117879 360 : laGlnLysProValGlnMetThrAlaGlyGlyValIleLysLeuSerIleGluArgPh : 378 .!||||||||||||!:::!!||||||||| !:!!:!! !||||||:!:|||! !|| lyGlnLysProValArgLeuThrAlaGlyLysIleValGlyLeuSerLeuGluThrPh 117880 : GTCAGAAACCGGTTCGTCTGACCGCCGGAAAAATCGTCGGACTCTCTCTGGAAACGTT : 117936 379 : eGlySerLeu : 381 |!.!|||:!! eAlaSerVal 117937 : TGCCTCTGTA : 117947 vulgar: NvOr232 252 381 . KQ414940.1 117441 117947 + 116 M 44 132 5 0 2 I 0 118 3 0 2 M 30 90 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 117442 117947 116 + . gene_id 1 ; sequence NvOr232 ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 117442 117573 . + . KQ414940.1 exonerate:protein2genome:local exon 117442 117573 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 117574 117575 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 117574 117695 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 117694 117695 . + . intron_id 0 ; splice_site "GC" KQ414940.1 exonerate:protein2genome:local cds 117696 117947 . + . KQ414940.1 exonerate:protein2genome:local exon 117696 117947 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 117442 117947 116 + . alignment_id 1 ; Query NvOr232 ; Align 117442 253 132 ; Align 117696 297 90 ; Align 117786 328 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr226 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 355 -> 398 Target range: 117863 -> 118062 356 : PheMetIleMetArgAlaGlnLysProValGlnLeuThrAlaGlyGlyPheValAsnL : 375 .!.:!!!!:!!:|||!.!||||||||||||!::|||||||||||| !.!!|||...| MetLeuMetIleArgGlyGlnLysProValArgLeuThrAlaGlyLysIleValGlyL 117864 : ATGCTGATGATCAGAGGTCAGAAACCGGTTCGTCTGACCGCCGGAAAAATCGTCGGAC : 117921 376 : euSerIleGlnThrPheGlyAla >>>> Target Intron 1 >>>> MetThr : 384 |||||:!::!!||||||!.!:!! 70 bp |||! ! euSerLeuGluThrPheAlaSer++ ++MetIle 117922 : TCTCTCTGGAAACGTTTGCCTCTgt.........................agATGATA : 118018 385 : LysSerAlaPheSerPhePheThrValLeuArgAsnPheSer : 398 ..!|||||| ! |||||||||||||||:!!|||!.!.!.!:! SerSerAlaValSerPhePheThrValValArgThrMetAsn 118019 : TCGTCGGCCGTGTCCTTCTTCACCGTCGTTCGAACCATGAAT : 118062 vulgar: NvOr226 355 398 . KQ414940.1 117863 118062 + 101 M 27 81 5 0 2 I 0 66 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 117864 118062 101 + . gene_id 1 ; sequence NvOr226 ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 117864 117944 . + . KQ414940.1 exonerate:protein2genome:local exon 117864 117944 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 117945 117946 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 117945 118014 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 118013 118014 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 118015 118062 . + . KQ414940.1 exonerate:protein2genome:local exon 118015 118062 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 117864 118062 101 + . alignment_id 1 ; Query NvOr226 ; Align 117864 356 81 ; Align 118015 383 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr233 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 251 -> 381 Target range: 117438 -> 117947 252 : ThrSerCysSerLysPheHisGlnAsnValLeuAsnLeuCysArgLysIleGluValI : 271 :!!||| ! !!:::!!.:!!! !:!!:!!!!!!..!!!|||!:! ! |||||| !: SerSerIleArgArgLeuTyrLeuAspIlePheArgPheCysGlnAspIleGluArgV 117439 : TCGTCGATTCGCCGCTTGTATCTGGACATTTTCAGGTTTTGCCAGGACATCGAACGTG : 117496 272 : leMetArgMetIlePheMetValGlnLeuMetCysLeuGlyTyrAsnIleSerLeuIl : 290 !!! !!.!:!!!!:|||.!...!||||||.!. !! ! !|||||||||||||||:! alThrAsnValMetPhePheThrGlnLeuPheGlySerThrTyrAsnIleSerLeuVa 117497 : TTACGAACGTGATGTTTTTCACGCAGCTGTTCGGTAGCACGTACAACATATCTTTAGT : 117553 291 : eGlyLeuLysLeuAlaGly >>>> Target Intron 1 >>>> AsnAspProG : 300 :|||!!!|||||| !||| 122 bp ||| |||! lGlyPheLysLeuIleGly++ --AsnTrpProA 117554 : GGGCTTCAAGTTGATCGGGgt.........................gcAATTGGCCCG : 117705 301 : luArgPheGlnTyrIleProAsnLeuValLeuCysLeuCysGlnLeuPheIleThrGl : 319 ! !|||! ||| ! ! ! !!! |||! !:!! !.!! !! !.. laAspPheLeuTyrSerLysValAsnGlnAsp***LeuSerGluThrLeuGluLysSe 117706 : CAGATTTCCTCTACTCGAAGGTAAACCAAGACTGACTCTCTGAAACCCTCGAAAAGAG : 117762 320 : nTrpAlaAlaAspTyrLeuLeuGluGlnSerGluGlyValAlaThrAlaAlaTyrPhe : 338 .!:: ! !! !|||!!!:!! |||||||||!.!:!!!.! !||||||||| rPheTyrPheValTyrPheVal---GlnSerGluAlaIleGlyArgAlaAlaTyrThr 117763 : TTTCTATTTCGTCTACTTTGTT---CAGAGCGAAGCGATCGGTCGTGCAGCCTATACG : 117816 339 : ThrThrLeuMetSerLeuAspProArgIleGlyGlyLeuLeuLeuThrValIleThrA : 358 ..! !!! ! !!!! ! !! ! !!:!: !! !! ! ! !! !:!!!!:! !| ValProTrpHisTrpTyrProArgCysLeuArgLysProThrAsnMetLeuMetIleA 117817 : GTGCCTTGGCATTGGTACCCTCGTTGCTTGCGAAAACCAACCAACATGCTGATGATCA : 117876 359 : rgAlaGlnLysProValGlnIleThrAlaGlyGlyValIleAsnLeuSerValGluAr : 377 ||!.!||||||||||||!:::!:||||||||| !:!!:!!...||||||:!!|||! rgGlyGlnLysProValArgLeuThrAlaGlyLysIleValGlyLeuSerLeuGluTh 117877 : GAGGTCAGAAACCGGTTCGTCTGACCGCCGGAAAAATCGTCGGACTCTCTCTGGAAAC : 117933 378 : gPheGlyAsnLeu : 381 !|||!.!::!:!! rPheAlaSerVal 117934 : GTTTGCCTCTGTA : 117947 vulgar: NvOr233 251 381 . KQ414940.1 117438 117947 + 115 M 45 135 5 0 2 I 0 118 3 0 2 M 30 90 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 117439 117947 115 + . gene_id 1 ; sequence NvOr233 ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 117439 117573 . + . KQ414940.1 exonerate:protein2genome:local exon 117439 117573 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 117574 117575 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 117574 117695 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 117694 117695 . + . intron_id 0 ; splice_site "GC" KQ414940.1 exonerate:protein2genome:local cds 117696 117947 . + . KQ414940.1 exonerate:protein2genome:local exon 117696 117947 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 117439 117947 115 + . alignment_id 1 ; Query NvOr233 ; Align 117439 252 135 ; Align 117696 297 90 ; Align 117786 328 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr216 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 140 -> 226 Target range: 4990 -> 5236 141 : IleAlaThrThrLeuPheTyrValLeuProPheLeuThrIleValIleAspArgIleLysPr : 161 :!!..!.!!.!!|||||| !|||||||||:!!:!! :!!:!:|||! !:!!! !|| LeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetPr 4991 : TTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCC : 5051 162 : oLeuGluAsnGlyThrArgPheArgAlaGlnProTyrHisGlnHisTyrPheAspLeuIleA : 182 |||| |||! !|||||| ||| ! !|||! :!!|||||| :!!| oLeu---AsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPhe------ValA 5052 : GTTG---AACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTC------GTCG : 5105 183 : spAsnGluLysTyrTyrTyrHisMetTyrIleGlyHisGlyTyrValValSerIleIleVal : 202 ||.!.!!:||||||:!!||| :!! !:!!|||||| !|||:!!||| !:!!!!::!! spGluAspLysTyrHisTyr---LeuIleValGlyHisMetTyrLeuValValValMetLeu 5106 : ACGAGGACAAATATCATTAC---TTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTT : 5162 203 : ThrValAlaValMetAlaIleAspThrMetTyrAlaAlaAsnIleGlnHisAlaCysGlyLe : 223 ! ! !!.! !! ||| !|||.!!! |||!.! ! !:!:||||||||||||||||| IleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLe 5163 : ATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATT : 5225 224 : uPheAlaIle : 226 |!!.|||||| uLeuAlaIle 5226 : GTTGGCCATT : 5236 vulgar: NvOr216 140 226 . LHQN01025741.1 4990 5236 + 128 M 22 66 G 1 0 M 15 45 G 2 0 M 8 24 G 1 0 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4991 5236 128 + . gene_id 1 ; sequence NvOr216 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4991 5236 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4991 5236 . + . insertions 0 ; deletions 4 LHQN01025741.1 exonerate:protein2genome:local similarity 4991 5236 128 + . alignment_id 1 ; Query NvOr216 ; Align 4991 141 66 ; Align 5057 164 45 ; Align 5102 181 24 ; Align 5126 190 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr216 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 182 -> 226 Target range: 11597 -> 11729 183 : AsnGluLysTyrTyrTyrHisMetTyrIleGlyHisGlyTyrValValSerIleIleVal : 202 :!!||| ! ! ||||||:!! !||| !|||||| !..! !:!:|||||| AspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeuIleVal 11598 : GACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTGATTGTA : 11655 203 : ThrValAlaValMetAlaIleAspThrMetTyrAlaAlaAsnIleGlnHisAlaCysGly : 222 ..!|||!.! ! ||| !||||||! ||| !!.! :!:||||||.!!|||||| ValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGly 11656 : GTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGA : 11715 223 : LeuPheAlaIle : 226 |||||||||:!: LeuPheAlaVal 11716 : CTGTTCGCCGTG : 11729 vulgar: NvOr216 182 226 . LHQN01025741.1 11597 11729 + 101 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11598 11729 101 + . gene_id 2 ; sequence NvOr216 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11598 11729 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11598 11729 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 11598 11729 101 + . alignment_id 2 ; Query NvOr216 ; Align 11598 183 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr217 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 343 -> 398 Target range: 2536 -> 2701 344 : GluGlnIlePheLeuAlaAlaCysGluThrCysTrpTyrAsnLeuSerValLysGlyGlnLy : 364 :!!:!!:!:|||:!! ! !! !....!! ||||||||| !||| !!:! !|||! GlnGluLeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGlnTh 2537 : CAGGAGTTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAAAC : 2597 365 : sLeuValTyrPheMetMetGlnLysAsnIleIleProLeuThrLeuThrAlaGlyGlyIleA : 385 ||| ! .!. :!!::!!:!!:!:!:! !|||! ! !|||||||||||||||:!: rLeuTyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGlyLeuI 2598 : TCTGTACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGA : 2660 386 : laGluLeuAsnPheGlnGlnPheAlaSerValSerLysThr : 398 !...||||||!!.:!! ||||||..!|||!:!! !||| leSerLeuAsnLeuGluThrPheAlaGluValAsnMetThr 2661 : TTTCCTTGAATTTGGAGACTTTTGCCGAGGTAAATATGACA : 2701 vulgar: NvOr217 343 398 . LHQN01025741.1 2536 2701 + 101 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 2537 2701 101 + . gene_id 1 ; sequence NvOr217 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 2537 2701 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2537 2701 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 2537 2701 101 + . alignment_id 1 ; Query NvOr217 ; Align 2537 344 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr217 Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 351 -> 400 Target range: 12805 -> 12952 352 : GluThrCysTrpTyrAsnLeuSerValLysGlyGlnLysLeuValTyrPheMetMetGln : 371 |||:!!! ||||||!.. !||| !||| !||| !||| ! ! !:!:!:! GluSerLeuTrpTyrThrSerSerSerLysThrGlnAlaLeuTyrValValAlaLeuArg 12806 : GAATCATTATGGTACACAAGTTCTTCGAAAACACAAGCATTATACGTGGTAGCGTTACGA : 12863 372 : LysAsnIleIleProLeuThrLeuThrAlaGlyGlyIleAlaGluLeuAsnPheGlnGln : 391 !:!|||:!!! !||| ! !|||||||||||||||:!!!.!:!!||||||.!. !... ArgAsnLeuThrProThrCysLeuThrAlaGlyGlyLeuValGlnLeuAsnMetAlaSer 12864 : AGAAACCTAACACCTACCTGTTTAACGGCTGGCGGTTTAGTGCAACTGAACATGGCAAGT : 12923 392 : PheAlaSerValSerLysThrSerMet : 400 ||| !..!|||!:!! |||!:!!!: PheLeuGluValAsnThrThrAsnIle 12924 : TTCTTGGAGGTAAACACCACCAACATT : 12952 vulgar: NvOr217 351 400 . LHQN01025741.1 12805 12952 + 101 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 12806 12952 101 + . gene_id 2 ; sequence NvOr217 ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 12806 12952 . + . LHQN01025741.1 exonerate:protein2genome:local exon 12806 12952 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 12806 12952 101 + . alignment_id 2 ; Query NvOr217 ; Align 12806 352 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr216 Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 182 -> 226 Target range: 1125 -> 993 183 : AsnGluLysTyrTyrTyrHisMetTyrIleGlyHisGlyTyrValValSerIleIleValTh : 203 :!!||| ! ! ||||||:!! !||| !|||||| !..! !:!:||||||.. AspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeuIleValVa 1125 : GACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGT : 1065 204 : rValAlaValMetAlaIleAspThrMetTyrAlaAlaAsnIleGlnHisAlaCysGlyLeuP : 224 !|||!.! ! ||| !||||||! ||| !!.! :!:||||||.!!|||||||||| lValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuP 1064 : GGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGT : 1002 225 : heAlaIle : 226 |||||:!: heAlaVal 1001 : TCGCCGTG : 994 vulgar: NvOr216 182 226 . LHQN01027734.1 1125 993 - 101 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 994 1125 101 - . gene_id 1 ; sequence NvOr216 ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 994 1125 . - . LHQN01027734.1 exonerate:protein2genome:local exon 994 1125 . - . insertions 0 ; deletions 0 LHQN01027734.1 exonerate:protein2genome:local similarity 994 1125 101 - . alignment_id 1 ; Query NvOr216 ; Align 1126 183 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr216 Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 140 -> 226 Target range: 5672 -> 5426 141 : IleAlaThrThrLeuPheTyrValLeuProPheLeuThrIleValIleAspArgIleLysPr : 161 :!!..!.!!.!!|||||| !|||||||||:!!:!! :!!:!:|||! !:!!! !|| LeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetPr 5672 : TTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCC : 5612 162 : oLeuGluAsnGlyThrArgPheArgAlaGlnProTyrHisGlnHisTyrPheAspLeuIleA : 182 |||| |||! !|||||| ||| ! !|||! :!!|||||| :!!| oLeu---AsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPhe------ValA 5611 : GTTG---AACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTC------GTCG : 5558 183 : spAsnGluLysTyrTyrTyrHisMetTyrIleGlyHisGlyTyrValValSerIleIleVal : 202 ||.!.!!:|||||| !||| :!! !:!!|||||| !|||:!!||| !:!!!!::!! spGluAspLysTyrArgTyr---LeuIleValGlyHisMetTyrLeuValValValMetLeu 5557 : ACGAGGACAAATATCGTTAC---TTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTT : 5501 203 : ThrValAlaValMetAlaIleAspThrMetTyrAlaAlaAsnIleGlnHisAlaCysGlyLe : 223 ! ! !!.! !! ||| !|||.!!! |||!.! ! !:!:||||||||||||||||| IleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLe 5500 : ATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATT : 5438 224 : uPheAlaIle : 226 |!!.|||||| uLeuAlaIle 5437 : GTTGGCCATT : 5427 vulgar: NvOr216 140 226 . LHQN01028732.1 5672 5426 - 124 M 22 66 G 1 0 M 15 45 G 2 0 M 8 24 G 1 0 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5427 5672 124 - . gene_id 1 ; sequence NvOr216 ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5427 5672 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5427 5672 . - . insertions 0 ; deletions 4 LHQN01028732.1 exonerate:protein2genome:local similarity 5427 5672 124 - . alignment_id 1 ; Query NvOr216 ; Align 5673 141 66 ; Align 5607 164 45 ; Align 5562 181 24 ; Align 5538 190 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr238PSE Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 158 -> 249 Target range: 204023 -> 204293 159 : ArgMetTyrProGlnValPhePheTyrIleTyrAspTyrGluAlaGlyGlyAlaIleH : 178 !:!:!:!:!||| ! :::|||||||||||| ...! ! ! ! !.!!. LysLeuPheProValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheG 204024 : AAGCTTTTTCCGGTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTG : 204081 179 : isTrpThrLeuTyrAlaPheGluLeuLeuAlaGlyPhePheLeuTrpSerValThrCy : 197 !. ! !:!!!:! !.!!:!!:!! !.!! ! ! !!.:!! ! ! ! lu---IleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIl 204082 : AG---ATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACAT : 204135 198 : sGlyValAspSerPhePheGlyLeuTyrSerLeuHisValValGlyGluMetArgLeu : 216 !|||||||||!:!|||||||||:!!! ! !||||||:!! !|||:!!:!!..! ! eGlyValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsn 204136 : TGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAAT : 204192 217 : LeuSerHisArgPheGlnAsnLeuLysSerSerLysGluTyrAlaLysAspLeuLysA : 236 ||| !! |||.!! !|||:!!||| !! !:!! !:!! !::: !||| ! LeuArgThrArgLeuAlaAsnIleLysHisLeuGluThrPheAspArgIleLeuValT 204193 : CTTCGTACACGACTTGCAAACATAAAACATTTGGAAACTTTTGATCGTATTTTAGTGA : 204252 237 : spCysValGluArgHisValGluLeuIleLysUnkSerVal : 249 ! |||||| !||||||..!||||||!:! !:!||| hrThrValGluAspHisValArgLeuIleArgPheAsnVal 204253 : CCACGGTAGAAGATCATGTGCGACTTATTAGGTTTAACGTT : 204293 vulgar: NvOr238PSE 158 249 . KQ414617.1 204023 204293 + 106 M 20 60 G 1 0 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204024 204293 106 + . gene_id 1 ; sequence NvOr238PSE ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204024 204293 . + . KQ414617.1 exonerate:protein2genome:local exon 204024 204293 . + . insertions 0 ; deletions 1 KQ414617.1 exonerate:protein2genome:local similarity 204024 204293 106 + . alignment_id 1 ; Query NvOr238PSE ; Align 204024 159 60 ; Align 204084 180 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr234PSE Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 216 -> 252 Target range: 117465 -> 117573 217 : MetIleLysPheCysLysGluValGluLysLeuThrAsnSerLeuPheMetValGlnL : 236 !!:.!!!:!||||||:!!!!::!!|||::::!!|||||| !:!!|||.!...!|||| IlePheArgPheCysGlnAspIleGluArgValThrAsnValMetPhePheThrGlnL 117466 : ATTTTCAGGTTTTGCCAGGACATCGAACGTGTTACGAACGTGATGTTTTTCACGCAGC : 117523 237 : euIleSerThrThrTyrAsnMetSerLeuIleGlyLeuLysLeuValGly : 252 ||.!!.!!!:!|||||||||!!:||||||:!:|||!!!||||||:!!||| euPheGlySerThrTyrAsnIleSerLeuValGlyPheLysLeuIleGly 117524 : TGTTCGGTAGCACGTACAACATATCTTTAGTGGGCTTCAAGTTGATCGGG : 117573 vulgar: NvOr234PSE 216 252 . KQ414940.1 117465 117573 + 113 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 117466 117573 113 + . gene_id 1 ; sequence NvOr234PSE ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 117466 117573 . + . KQ414940.1 exonerate:protein2genome:local exon 117466 117573 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 117466 117573 113 + . alignment_id 1 ; Query NvOr234PSE ; Align 117466 217 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr235PSE Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 178 Query range: 157 -> 283 Target range: 117151 -> 117573 158 : LeuProPheGluPheTyrValGluValGlnSerThrProTrpTyrGluLeuValLeuI : 177 ||||||!:!! !|||!:!:!!|||||||||..!|||||||||||||||:!!..!! ! LeuProTyrValPhePheLeuGluValGlnGlnThrProTrpTyrGluIleThrCysA 117152 : TTGCCGTACGTGTTCTTTCTTGAGGTGCAACAAACGCCGTGGTACGAGATCACTTGCG : 117209 178 : leLeuGluGlyIleAlaMetPheSerLeuAlaLeuValSerSerLeuValAspIleTh : 196 !|||:!! !.!!||||||!!.!:!:!!!.!:!!..!!!! ! !|||||| || laLeuGlnLeuPheAlaMetLeuAsnValGlyIleThrCysValGlyValAsp---Th 117210 : CCCTTCAGCTGTTCGCGATGTTGAACGTCGGCATCACCTGTGTCGGAGTAGAC---AC : 117263 197 : rAlaGlyProPheLeuIleLeuMetGlyCysGlyHisLeuArgThrLeuGlyHisArg : 215 | !||||||.!!!!!:!!|||:!: !|||!.!|||!!! !..!:!! !! !||| rIleGlyProLeuPheValLeuLeuThrCysAlaHisPheAspValIleArgSerArg 117264 : GATCGGTCCTCTCTTCGTCCTGCTCACTTGTGCTCATTTCGACGTGATTCGATCTCGA : 117320 216 : LeuArgAsnIleAspSerArgLeuAspGlyArgProAlaAlaSerSerArgGlnTyrL : 235 :!!..!!:!:!! !!:!! :!!||| !:!!||||||!!! ! ! IleGluSerLeuHisAla---IleAsp---------ArgSerSerSerSerValGlnT 117321 : ATCGAGAGTTTACACGCG---ATCGAT---------CGTTCTTCGAGCAGCGTACAGA : 117368 236 : euAlaGluLeuThrSerCysIleArgTyrHisGlnMetIleLeu{Se} >>>> Tar : 250 ! !.!.||| ! !! :!:! ! !|||!:!|||:!!|||{..} hrArgAsnLeuArgValLeuValIleArgHisArgMetLeuLeu{Gl}++ 117369 : CGAGAAATCTCCGAGTCTTGGTGATCCGTCATCGAATGCTCCTC{GA}gt........ : 117417 251 : get Intron 1 >>>> {r}TyrCysAspGlnValGlnArgValLeuGlyGlyVal : 262 59 bp {!}!:!|||.!..!.:!!:!!|||||| !..!! !:!! ++{u}PheCysGlnAspIleGluArgValThrAsnValMet 117418 : .................ag{G}TTTTGCCAGGACATCGAACGTGTTACGAACGTGATG : 117508 263 : PheValThrGlnLeuIleSerThrThrTyrAsnIleSerLeuLeuGlyLeuLysValI : 282 ||| !!|||||||||.!!.!!!:!||||||||||||||||||:!!|||!!!|||:!!| PhePheThrGlnLeuPheGlySerThrTyrAsnIleSerLeuValGlyPheLysLeuI 117509 : TTTTTCACGCAGCTGTTCGGTAGCACGTACAACATATCTTTAGTGGGCTTCAAGTTGA : 117568 283 : leGly : 283 ||||| leGly 117569 : TCGGG : 117573 vulgar: NvOr235PSE 157 283 . KQ414940.1 117151 117573 + 178 M 37 111 G 1 0 M 26 78 G 1 0 M 2 6 G 3 0 M 22 66 S 0 2 5 0 2 I 0 55 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 117152 117573 178 + . gene_id 1 ; sequence NvOr235PSE ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 117152 117414 . + . KQ414940.1 exonerate:protein2genome:local exon 117152 117414 . + . insertions 0 ; deletions 5 KQ414940.1 exonerate:protein2genome:local splice5 117415 117416 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 117415 117473 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 117472 117473 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 117474 117573 . + . KQ414940.1 exonerate:protein2genome:local exon 117474 117573 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 117152 117573 178 + . alignment_id 1 ; Query NvOr235PSE ; Align 117152 158 111 ; Align 117263 196 78 ; Align 117341 223 6 ; Align 117347 228 66 ; Align 117475 251 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr269 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 198 -> 306 Target range: 806529 -> 806847 199 : TyrLeuLeuIleValPheGlnGluAlaPheTyrLeuPheTyrThrAlaAlaLeuPheT : 218 :!!:!!! !:!::!!.!.! !:!!!.!.!.:!!:!!|||!:!!.!|||!.! ! ! HisValCysValLeuLeuLeuGlnGlyMetHisIlePhePheAsnAlaValAlaHis- 806530 : CACGTCTGCGTGTTACTGCTGCAAGGGATGCACATTTTCTTCAACGCCGTGGCTCAC- : 806587 219 : rpValSerGlyAspThrLeuPheAlaGlnSerValThrHisIleCysLeuGlnPheLy : 237 !.!!..!||| !|||||| !... !..!! !|||:!:||| !||||||:! --CysGlyAsnAspGlyLeuPhePheSerLeuThrMetHisLeuCysGlyGlnPheGl 806588 : --TGCGGCAACGACGGCCTCTTCTTCAGCCTGACGATGCATCTGTGCGGTCAGTTTGA : 806641 238 : sIleLeuLysTyrAspIleAspAlaThrPheAsnArgGluAspMetArgAspHisLeu : 256 !||||||||| :!!:!: ||| !.!!.!. !|||! !!: ! !!.. ! uIleLeuLysMetAsnLeu---AlaGluIleGluPheGluAlaIleAlaCysArgLys 806642 : AATTCTGAAGATGAATCTG---GCGGAGATCGAGTTCGAGGCGATCGCTTGTCGGAAG : 806695 257 : SerLeuValThrIleValLysArgHisArgAspLeuLeuArgIleCysLysLeuIleG : 276 !!:!!! !..!:!!|||||||||||| !! ! ||| ! !:!: !!!. !:!!| ArgIleGlyValLeuValLysArgHisCysLysLeuAlaValLeuThrAsnAspLeuG 806696 : CGAATCGGCGTTCTCGTGAAACGACACTGCAAACTGGCGGTGTTGACCAACGATCTCG : 806755 277 : luGluValPheSerProIleIleLeuSerIleMetLeuLeuSerSerLeuAsnLeuCy : 295 ||:!! !|||||| !||||||||| ! !:!::!!:!!|||:!!||| :!!|| luGlnSerPheSerMetIleIleLeuValGlnLeuMetMetSerAlaLeuLeuIleCy 806756 : AGCAGAGCTTCAGTATGATTATTCTGGTGCAACTCATGATGAGTGCGTTGCTAATTTG : 806812 296 : sValAsnValValGlyIleArgGlyThrIleAla : 306 ||||.!.! !! !..!:!: !|||! !:!!::! sValGluGlyGluSerLeuPheGlyLysValSer 806813 : CGTAGAAGGTGAGTCGTTGTTCGGAAAAGTAAGT : 806847 vulgar: NvOr269 198 306 . KQ414940.1 806529 806847 + 100 M 19 57 G 1 0 M 25 75 G 1 0 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806530 806847 100 + . gene_id 1 ; sequence NvOr269 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 806530 806847 . + . KQ414940.1 exonerate:protein2genome:local exon 806530 806847 . + . insertions 0 ; deletions 2 KQ414940.1 exonerate:protein2genome:local similarity 806530 806847 100 + . alignment_id 1 ; Query NvOr269 ; Align 806530 199 57 ; Align 806587 219 75 ; Align 806662 245 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr292 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 335 -> 388 Target range: 1395323 -> 1395482 336 : SerArgAlaValGlnAlaAlaPheTyrGluCysLysTrpTyrThrMetProLeuGl : 354 |||! !:!!:!!... !||| |||...! |||||| !:!! !! !|| SerLeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGl 1395324 : AGTCTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCA : 1395378 355 : nAspArgLysLeuIleIleLeuAsnLeuLeuArgSerGlnArgProIleArgPheT : 373 ||||||| ! :!!||||||||| !:!!:!!||||||||||||! !:!!! !.!!| nAspArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleT 1395379 : AGACAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCA : 1395435 374 : hrAlaGlySerLeuGlyThrPheSerIleGlnLeuPheSerGluVal : 388 ||||||||!.!!!! ! !!!.|||:!!:!! !|||:!!.!.||| hrAlaGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnVal 1395436 : CCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTA : 1395482 vulgar: NvOr292 335 388 . KQ414716.1 1395323 1395482 + 100 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395324 1395482 100 + . gene_id 1 ; sequence NvOr292 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395324 1395482 100 + . alignment_id 1 ; Query NvOr292 ; Align 1395324 336 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr289 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 330 -> 372 Target range: 1387619 -> 1387745 331 : SerGluArgValSerGlnAlaTyrTyrAspCysGluTrpTyrAsnMetSerLysGl : 349 |||||||||:!!!!!|||:!: |||::: ||||||:!!:!:!.! .. SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 350 : uAsnAlaArgIleIleIleLeuCysMetAlaArgSerGlnLysProLeuGlnLeuT : 368 !.!.|||||||||::::::||| ::: |||||||||||| !||| !|||| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 369 : hrAlaGlyLysPhe : 372 |||||||||||||| hrAlaGlyLysPhe 1387732 : CTGCGGGCAAATTT : 1387745 vulgar: NvOr289 330 372 . KQ414716.1 1387619 1387745 + 116 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387745 116 + . gene_id 1 ; sequence NvOr289 ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387745 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387745 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387745 116 + . alignment_id 1 ; Query NvOr289 ; Align 1387620 331 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr289 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 330 -> 398 Target range: 1345564 -> 1345846 331 : SerGluArgValSerGlnAlaTyrTyrAspCysGluTrpTyrAsnMetSerLysGl : 349 |||.....!:!!..!||||||! !||| ! !!.!.||||||:!!:!: !! ! :! SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 350 : uAsnAlaArgIleIleIleLeuCysMetAlaArgSerGlnLysProLeuGlnLeuT : 368 ! !!.!!||| :!!|||!!!|||!!:||||||||||||||||||! ! ! |||| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 369 : hrAlaGlyLysPheSerMetPheCysLeuGlnThrLeuThrAsp >>>> Targe : 383 ||||||||||||||! !:!!|||! |||:!!|||!!! ! ! hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIle++ 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCgt.......... : 1345723 384 : t Intron 1 >>>> SerIleLysAlaSerMetGlyTyrLeuSerValLeuArg : 395 78 bp ! !:!!||||||||||||!.!|||||||||||||||!:! ++IleValLysAlaSerMetAlaTyrLeuSerValLeuLys 1345724 : ...............agATAGTAAAAGCGTCGATGGCCTATCTTTCCGTTCTGAAA : 1345835 396 : ThrValMet : 398 !:!:!!!!: SerIleIle 1345836 : AGCATTATC : 1345846 vulgar: NvOr289 330 398 . KQ414782.1 1345564 1345846 + 158 M 52 156 5 0 2 I 0 74 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345846 158 + . gene_id 1 ; sequence NvOr289 ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345565 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345846 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345846 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345846 158 + . alignment_id 1 ; Query NvOr289 ; Align 1345565 331 156 ; Align 1345799 383 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr289 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 9 -> 153 Target range: 1342082 -> 1342517 10 : GlnAlaGluLeuAspAspSerSerGlnValPheArgTyrAsnTyrIleLeuLeuTh : 28 .!.!.!|||||| ! !!..!..!.!.|||.!. !!::!:! ! !|||||| AsnValGluLeuPheTyrAspGluAsnValLeuSerTrpSerLysArgLeuLeuGl 1342083 : AACGTGGAACTGTTCTACGACGAGAACGTGCTATCGTGGAGCAAACGTCTCCTCGG : 1342137 29 : rThrLeuGlyLeuTrpProAlaSerLeuSerAspValArgPhePheLeuAsnPheG : 47 ! !! !||||||||||||! !!:!! !!:!|||||||||||||||... .!!. yLeuSerGlyLeuTrpProAspAsnArgAsnAspValArgPhePhePheTyrIleS 1342138 : CTTATCCGGCCTGTGGCCGGATAATCGCAACGAcgtacgatttttcttctacATTA : 1342194 48 : lyTyrPheCysTyrGluMetLeuLeuGluTyrLeuAspLeuPheLeuPheIleAsp : 65 !!||| ! ! ! !! !|||||| :!! |||.!.! ! !||| !! erTyrValValIlePheThrTrpLeuGluMetValThrLeuLeuGlnAsnIleHis 1342195 : GCTACGTGGTGATCTTCACGTGGCTGGAGATGGTGACGCTGCTGCAGAATATACAC : 1342248 66 : AsnPheGluAsnValLeuMetAsnLeuThrGluAsnMetAlaPheSerGlnIlePh : 84 :!!.!!|||... ||| |||:::||| !:::.!. !! !! ! !||| ! AspLeuGluLysSerLeuLysAsnIleThrLeuSerPheProThrIleLeuIleVa 1342249 : GACCTTGAGaagtcgttgaaaaatatcacgCTATCGTTCCCGACCATCTTGATAGT : 1342305 85 : eIleArgMetLeuMetLeuArgIleTyrAsnSerGluLeuGlyGluIleIleGlyA : 103 :!:!:! :!!|||!!!|||:!: !!! ! :!! ! !:!::!!! !! lLeuLysAlaValMetPheArgLeuAsnMetHisLeuValLeuProLeuLeuGluA 1342306 : GCTGAAGGCCGTGATGTTTCGGCTGAACATGCATCTCGTCCTGCCGTTGCTCGAGG : 1342362 104 : spAlaLysLysAspPheAspAlaLysAsnTyr<->ThrGluGluGluArgLysThr : 120 !.!!:!|||||| ! ! ! ! ||| :!!:!!|||||||||::!||| laValArgLysAspValLysGlnGlyLeuTyrArgSerGlnGluGluArgArgThr 1342363 : CAGTGAGAAAGGACGTGAAACAGGGACTGTATCGGTCGCAGGAGGAAAGGCGAACG : 1342416 121 : PheValAlaTyrHisValLysSerArgThrPheMetLysLeuLeuIleThrAsnTh : 139 !!||| !||| !||| :!!! ! !||| ! !! !! ! !! !::! ValValTrpTyrSerValAlaAlaThrLeuPheSerThrSerSerAlaMetSerLe 1342417 : GTTGTATGGTACAGCGTGGCCGCCACCTTATTTTCCACGTCGTCGGCCATGTCTTT : 1342473 140 : rAlaLeuThrAlaSerSerTyrTyrValLysProLeuLeuGly : 153 ! !!!!..! !!!!!! !!:!|||..!||||||:!!:!!||| uPhePheValProThrLeuPheTyrThrLysProIleValGly 1342474 : GTTCTTCGTGCCCACGTTATTTTATACGAAGCCGATCGTCGGC : 1342517 vulgar: NvOr289 9 153 . KQ414782.1 1342082 1342517 + 136 M 104 312 G 0 3 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1342083 1342517 136 + . gene_id 2 ; sequence NvOr289 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1342083 1342517 . + . KQ414782.1 exonerate:protein2genome:local exon 1342083 1342517 . + . insertions 3 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1342083 1342517 136 + . alignment_id 2 ; Query NvOr289 ; Align 1342083 10 312 ; Align 1342398 114 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr289 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 327 -> 397 Target range: 34375 -> 34668 328 : IleThrGluSerGluArgValSerGlnAlaTyrTyrAspCysGluTrpTyrAsnMetSer : 347 ||| !:!!|||..!..!:!!|||.!.:!! !|||!!:! .!.|||||||||:!:||| IlePheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSer 34376 : ATATTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCA : 34433 348 : LysGluAsnAlaArgIleIleIleLeuCysMetAlaArgSerGlnLysProLeuGlnLeu : 367 !.!.|||!:! !:!!:!!!!! !||| !|||!!! :::|||||| ||| ProProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeu 34434 : CCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTG : 34493 368 : ThrAlaGlyLysPheSerMetPheCysLeuGlnThrLeuThrAsp >>>> Target I : 383 ||||||||||||||||||! |||! !:!!:!!! !!!!!:! ! 83 ThrAlaGlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34494 : ACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt............. : 34543 384 : ntron 1 >>>> SerIleLysAlaSerMetGlyTyrLeuSerValLeuArgThrVal : 397 bp :!:|||.!!:!!|||||||||||||||||||||! !|||||| ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeuThrVal 34544 : ............agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTCACAGTT : 34668 vulgar: NvOr289 327 397 . KQ414804.1 34375 34668 + 146 M 55 165 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34376 34668 146 + . gene_id 1 ; sequence NvOr289 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34376 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34376 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34668 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34668 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34376 34668 146 + . alignment_id 1 ; Query NvOr289 ; Align 34376 328 165 ; Align 34624 383 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr289 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 329 -> 377 Target range: 51888 -> 52032 330 : GluSerGluArgValSerGlnAlaTyrTyrAspCysGluTrpTyrAsnMetSerLysGlu : 349 ::!|||! ..!:!!:!!.!.||| ||||||! !||||||||||||:!!||| !:!! GlnSerValGluIleAlaAsnAlaAlaTyrAspSerGluTrpTyrAsnLeuSerProLys 51889 : caGAGCGTTGAAATAGCTAACGCGGCATACGATTCTGAATGGTACAATTTGTCTCCGAAA : 51946 350 : AsnAlaArgIleIleIleLeuCysMetAlaArgSerGlnLysProLeuGlnLeuThrAla : 369 ||||||!:!:!::!!:!!:!! !||| !|||:!!::! !|||||||||:!!|||||| AsnAlaLysLeuLeuLeuIleIleMetArgArgAlaArgLeuProLeuGlnIleThrAla 51947 : AATGCAAAGTTGCTACTAATTATCATGCGACGAGCCAGGTTACCTCTACAAATCACTGCA : 52006 370 : GlyLysPheSerMetPheCysLeu : 377 |||!:!|||:!!! ||| !||| GlyArgPheAlaThrPheThrLeu 52007 : GGTAGATTTGCTACTTTCACTCTG : 52032 vulgar: NvOr289 329 377 . KQ414804.1 51888 52032 + 135 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51889 52032 135 + . gene_id 2 ; sequence NvOr289 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 51889 52032 . + . KQ414804.1 exonerate:protein2genome:local exon 51889 52032 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51889 52032 135 + . alignment_id 2 ; Query NvOr289 ; Align 51889 330 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr289 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 330 -> 378 Target range: 39965 -> 40109 331 : SerGluArgValSerGlnAlaTyrTyrAspCysGluTrpTyrAsnMetSerLysGluAsn : 350 ||| !!:!!.!!|||:!! |||||||||.!.||||||:!!:!: !! !:!!:!! SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 351 : AlaArgIleIleIleLeuCysMetAlaArgSerGlnLysProLeuGlnLeuThrAlaGly : 370 ||| ! :!!:!!:!! !!:..!|||:!!||| ! !!!!!|||:!!||||||||| AlaValSerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGly 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGA : 40083 371 : LysPheSerMetPheCysLeuGln : 378 ||||||||| |||! !|||:!! LysPheSerProPheSerLeuGlu 40084 : AAATTCAGTCCCTTTTCTCTCGAG : 40109 vulgar: NvOr289 330 378 . KQ414804.1 39965 40109 + 111 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40109 111 + . gene_id 3 ; sequence NvOr289 ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39966 40109 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40109 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39966 40109 111 + . alignment_id 3 ; Query NvOr289 ; Align 39966 331 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr289 Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 326 -> 379 Target range: 292380 -> 292539 327 : LeuIleThrGluSerGluArgValSerGlnAlaTyrTyrAspCysGluTrpTyrAsnM : 346 :!!:!: !:!!.!!.....!:!!:!!!!.|||! !|||||| ||||||||||||: ValLeuTyrGlnGlySerGluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnL 292381 : GTGTTGTACCAGGGTAGTGAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATC : 292438 347 : etSerLysGluAsnAlaArgIleIleIleLeuCysMetAlaArgSerGlnLysProLe : 365 !! !!!:!..!!!.|||||| !|||:!!||| :!:|||! !!!!:!! ! |||:! euProArgArgLysAlaArgAspIleValLeuValLeuAlaIleThrLysHisProIl 292439 : TGCCGAGACGGAAGGCTCGTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGAT : 292495 366 : uGlnLeuThrAlaGlyLysPheSerMetPheCysLeuGlnThr : 379 !:!!|||||||||||||||.!.! !:!:.!!! |||.!.||| eLysLeuThrAlaGlyLysIlePheValLeuSerLeuAsnThr 292496 : CAAACTTACAGCAGGCAAAATATTCGTTCTCTCGTTGAACACT : 292539 vulgar: NvOr289 326 379 . KQ414889.1 292380 292539 + 114 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292381 292539 114 + . gene_id 1 ; sequence NvOr289 ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292381 292539 . + . KQ414889.1 exonerate:protein2genome:local exon 292381 292539 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292381 292539 114 + . alignment_id 1 ; Query NvOr289 ; Align 292381 327 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr277 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 206 -> 292 Target range: 806562 -> 806817 207 : LeuTyrAlaSerGlyValTyrTrpIleGlySerAspAlaLeuPheAlaGlnPheThrT : 226 :!!!:! !!:!!.!||| ! !|||!:!|||!.!|||||| !....!.|||! IlePhePheAsnAlaValAlaHisCysGlyAsnAspGlyLeuPhePheSerLeuThrM 806563 : ATTTTCTTCAACGCCGTGGCTCACTGCGGCAACGACGGCCTCTTCTTCAGCCTGACGA : 806620 227 : hrHisIleCysLeuGlnPheLysIleLeuLysCysAsnThrLysGluValPheAsnAr : 245 !|||:!:||| !||||||:!!||||||||| ||| ! !|||:!! .!. etHisLeuCysGlyGlnPheGluIleLeuLysMetAsnLeuAlaGluIle---GluPh 806621 : TGCATCTGTGCGGTCAGTTTGAAATTCTGAAGATGAATCTGGCGGAGATC---GAGTT : 806674 246 : gGlySerLysGluAlaHisSerSerLeuIleAspLeuIleLysArgHisArgGluLeu : 264 !! !:!!! ! ..!!..!.! !!:!! !! !|||:!:||||||||| !!:!!||| eGluAlaIleAlaCysArgLysArgIleGlyValLeuValLysArgHisCysLysLeu 806675 : CGAGGCGATCGCTTGTCGGAAGCGAATCGGCGTTCTCGTGAAACGACACTGCAAACTG : 806731 265 : LeuLysIleCysGluMetThrGluGluIleTyrSerProIleIlePheSerThrMetL : 284 ! !:!: !.!. !|||:!!! !!:!||| !||||||.!. ! !:!:: AlaValLeuThrAsnAspLeuGluGlnSerPheSerMetIleIleLeuValGlnLeuM 806732 : GCGGTGTTGACCAACGATCTCGAGCAGAGCTTCAGTATGATTATTCTGGTGCAACTCA : 806791 285 : euPheSerAlaIleAsnMetCysVal : 292 !!.!.||||||:!: !!:|||||| etMetSerAlaLeuLeuIleCysVal 806792 : TGATGAGTGCGTTGCTAATTTGCGTA : 806817 vulgar: NvOr277 206 292 . KQ414940.1 806562 806817 + 108 M 36 108 G 1 0 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806563 806817 108 + . gene_id 1 ; sequence NvOr277 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 806563 806817 . + . KQ414940.1 exonerate:protein2genome:local exon 806563 806817 . + . insertions 0 ; deletions 1 KQ414940.1 exonerate:protein2genome:local similarity 806563 806817 108 + . alignment_id 1 ; Query NvOr277 ; Align 806563 207 108 ; Align 806671 244 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr292 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 296 -> 400 Target range: 807269 -> 807581 297 : LeuIleCysLeuArgProGlyLysArgIleHisLeuIleAsnThrValIleLeuLeuP : 316 |||:!!..!|||!!! !! ! ! !.!:!! !:!:!..!:! !!:!!|||:!! LeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuMetV 807270 : CTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGATGG : 807327 317 : heLeuAsnIleValArgLeuTyrSerHisCysCysValGlyGluPheLeuIleGlnGl : 335 ! ! :!::!!!:!|||||| !:!!..!! !!.!|||.!. ||| ..!.. alThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerAr 807328 : TGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCG : 807384 336 : uSerArgAlaValGlnAlaAlaPheTyrGluCysLysTrpTyrThrMetProLeuGln : 354 !!!!..!! !:!! ! !||| !|||!!:! ! |||||| ! ! ! !!!. gThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHis 807385 : AACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCAC : 807441 355 : AspArgLysLeuIleIleLeuAsnLeuLeuArgSerGlnArgProIleArgPheThrA : 374 ! !!:! !:!!:!!|||! !:!!! !|||.!!.!. !||| !|||.!.|||| AlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrA 807442 : GCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAG : 807501 375 : laGlySerLeuGlyThrPheSerIleGlnLeuPheSerGluValLeuLysSerSerLe : 393 |||||!.!!!!! ! !!.!.!:!:!! !|||!.!|||:!!||||||:!!||| laGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGl 807502 : CCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGG : 807558 394 : uGlyTyrLeuSerValLeuArg : 400 !..!||||||||||||:!!!:! ySerTyrLeuSerValMetLys 807559 : CTCGTATCTGTCTGTAATGAAG : 807581 vulgar: NvOr292 296 400 . KQ414940.1 807269 807581 + 122 M 104 312 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807270 807581 122 + . gene_id 1 ; sequence NvOr292 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807270 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807270 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807270 807581 122 + . alignment_id 1 ; Query NvOr292 ; Align 807270 297 312 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr289 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 172 Query range: 287 -> 398 Target range: 807257 -> 807590 288 : GlyTyrGlnIleLeuThrSerLeuAlaAsnGlyGluArgAlaIleLeuIleSerPheP : 307 |||!:! .!!|||..!:!!|||::!!.. !!!:!.!!.! ! !:!:!!! !| GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 308 : heAlaPheIlePheLeuValLeuLeuValLeuTyrAlaHisCysThrValGlyGluSe : 326 ||!.!.!.!!: ! !:!!|||:!! !|||||| !:!!..! !!.!|||.!.!! heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 327 : rLeuIleThrGluSerGluArgValSerGlnAlaTyrTyrAspCysGluTrpTyrAsn : 345 !||| :!!..!!!!|||..!:!!:!!|||||| !||||||! ! ||||||..! rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 346 : MetSerLysGluAsnAlaArgIleIleIleLeuCysMetAlaArgSerGlnLysProL : 365 ! !.!. |||||| !:!!:!!||| !!!: !|||.!!.!...!|||! CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 366 : euGlnLeuThrAlaGlyLysPheSerMetPheCysLeuGlnThrLeuThrAspSerIl : 384 !!:::!!||||||||||||||| ! !.!. !||| |||!!!! !!!:! !:! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 385 : eLysAlaSerMetGlyTyrLeuSerValLeuArgThrValMet : 398 :||||||||| ..!||||||||||||:!!!:!..!:!!||| uLysAlaSerGlySerTyrLeuSerValMetLysValMetMet 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATG : 807590 vulgar: NvOr289 287 398 . KQ414940.1 807257 807590 + 172 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807590 172 + . gene_id 1 ; sequence NvOr289 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807590 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807590 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807590 172 + . alignment_id 1 ; Query NvOr289 ; Align 807258 288 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747956|gb|AGS43073.1| odorant receptor Or4b [Cephus cinctus] Target: KQ414583.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold34, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 149 -> 215 Target range: 619750 -> 619948 150 : ArgLeuLeuProMetLysIleTrpLeuProTyrSerLeuSerSerLeuThrLeuPheS : 169 !:!|||||| !!!:||| !|||! !||||||!:!:!!!!!! !! ! !! !!::. GlnLeuLeuLeuIleLysAlaTrpTyrProTyrAsnValThrIleSerProAlaTyrG 619751 : CAACTTTTATTGATAAAAGCATGGTATCCTTATAATGTAACAATTTCGCCAGCTTAtg : 619808 170 : erLeuSerPheLeuTyrGlnValValThrMetThrLeuAlaAsnAlaIleThrValAl : 188 .....:::...|||:::||||||||| !:!:|||::: ...||||| luPheThrIleLeuHisGlnValValGlyValThrValAsnCysIleAsnAsnValAl 619809 : aatttactattttacatCAAGTCGTGGGTGTCACTGtaaattgtattaataatGTAGC : 619865 189 : aAsnAspThrTyrIleThrGlyLeuMetIleGluIleCysAlaGlnLeuGluIleLeu : 207 |! ||||||!:!|||||||||!!!!!:||| !|||..!|||||| !:!!||| aIleAspThrPheIleThrGlyPheIleIleThrAlaCysCysGlnLeuThrLeuLeu 619866 : AATAGATACTTTTATAACAGGTTTTATAATAACTGCTTGTTGCCAATTGACACTCTTA : 619922 208 : LysLeuArgLeuValGluLeuHis : 215 !..! !!.!:!! !..!:!!||| SerTyrAsnIleSerSerIleHis 619923 : AGTTATAACATCTCTTCGATACAC : 619948 vulgar: gi|528747956|gb|AGS43073.1| 149 215 . KQ414583.1 619750 619948 + 120 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414583.1 exonerate:protein2genome:local gene 619751 619948 120 + . gene_id 1 ; sequence gi|528747956|gb|AGS43073.1| ; gene_orientation . KQ414583.1 exonerate:protein2genome:local cds 619751 619948 . + . KQ414583.1 exonerate:protein2genome:local exon 619751 619948 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local similarity 619751 619948 120 + . alignment_id 1 ; Query gi|528747956|gb|AGS43073.1| ; Align 619751 150 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr301FIX Target: KQ414588.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold11, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 348 -> 414 Target range: 776523 -> 776799 349 : GluIleValPheAsnAspThrTyrCysGlyTyrTrpTyrAsnIleSerProAsnAlaA : 368 :!!|||||| ! !..!! !||| !!!.!! |||||||||! !..! !!...!!! LysIleValHisPheSerArgTyrSerAlaLeuTrpTyrAsnSerAspLysArgThrG 776524 : aAAATTGTCCATTTTTCTAGATACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGC : 776581 369 : rgLysTyrThrGlnMetValMetValArgSerMetLysProCysIleIleThrAlaGl : 387 :!..!! ! !:!:!.!:!: !!.!!!!:!:... !! ! !||||||||||| lnSerLeuPheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGl 776582 : AATCGTTGTTTGTATTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGG : 776638 388 : yGlyLeuIleAsnMetAsnLeuGlnSerPhePheAla >>>> Target Intron : 400 ||||||||||!..||||||||||||||||||! ! ! 78 bp yGlyLeuIleThrMetAsnLeuGlnSerPheSerGlu++ 776639 : TGGACTAATTACAATGAACTTGCAAAGTTTCTCAGAGgt................... : 776679 401 : 1 >>>> IleLeuLysThrSerValSerTyrAlaThrValMetLeuSerMet : 414 |||:!!|||||||||||||||||| !! !|||:!! !|||:!: ++IleValLysThrSerValSerTyrTyrMetValLeuLysSerVal 776680 : ......agATTGTAAAGACGTCTGTCTCGTACTACATGGTACTGAAATCCGTA : 776799 vulgar: NvOr301FIX 348 414 . KQ414588.1 776523 776799 + 118 M 51 153 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414588.1 exonerate:protein2genome:local gene 776524 776799 118 + . gene_id 1 ; sequence NvOr301FIX ; gene_orientation + KQ414588.1 exonerate:protein2genome:local cds 776524 776676 . + . KQ414588.1 exonerate:protein2genome:local exon 776524 776676 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local splice5 776677 776678 . + . intron_id 1 ; splice_site "GT" KQ414588.1 exonerate:protein2genome:local intron 776677 776754 . + . intron_id 1 KQ414588.1 exonerate:protein2genome:local splice3 776753 776754 . + . intron_id 0 ; splice_site "AG" KQ414588.1 exonerate:protein2genome:local cds 776755 776799 . + . KQ414588.1 exonerate:protein2genome:local exon 776755 776799 . + . insertions 0 ; deletions 0 KQ414588.1 exonerate:protein2genome:local similarity 776524 776799 118 + . alignment_id 1 ; Query NvOr301FIX ; Align 776524 349 153 ; Align 776755 400 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747956|gb|AGS43073.1| odorant receptor Or4b [Cephus cinctus] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 210 Query range: 246 -> 368 Target range: 3155805 -> 3156244 247 : LysValLysAlaAsnValGluLysAlaPheAsnSerIlePheLeuIleGlnIleVa : 265 !:! !!! |||! :!!.!.:!! !|||.!.! ! .!!!!!! !|||.!!!. ArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAl 3155806 : AGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGC : 3155860 266 : lThrSerThrLeuValPheCysValThrAlaLeuThrPheLeuLysHisGluIleL : 284 !..!|||||||||!.!.!.||| !!!.! !! ! !!!. ! ! !!::!: aValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValT 3155861 : GGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGA : 3155917 285 : euSerValGluLeuAlaSerValIleLeuTyrPhePheThrMetMetPheGlnLeu : 302 ! !!:!!..!! !!.!..!:!!|||:!!||| ! ! !|||:!: |||:!! hrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIle 3155918 : CGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATA : 3155971 303 : PheLeuPheCysTrpTyrGlyAsnLysValIleLeuLys >>>> Target Int : 316 |||:!!!:!|||||||||||||||:!!|||! |||||| 73 bp PheIleTyrCysTrpTyrGlyAsnGluValLysLeuLys++ 3155972 : TTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAGgt............... : 3156015 317 : ron 1 >>>> SerThrGluValArgSerAlaValPheGluMetAspTrpIlePr : 330 ||| !|||:!! !!:! !:!!|||.!.:!:||||||! !|| ++SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrPr 3156016 : ..........agAGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACC : 3156128 331 : oLeuProGlnAlaIleLysLysAspPheIlePheLeuMetMetArgThrAsnIleP : 349 |!!! !:!!|||! !|||::!:!!.!.:!! !:!!|||||||||.!!::: | oPheAspLysAlaThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerP 3156129 : GTTCGATAAAGCTACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGC : 3156185 350 : roIleArgPheThrSerGlyTyrValValThrLeuSerLeuAspSerPheMetAla : 367 |||||..!.!!! !|||! ! !|||:!!:!!:!!!:!||||||||||||:!:||| roIleGluIleIleSerValArgValLeuSerValAsnLeuAspSerPheValAla 3156186 : CAATTGAAATCATCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCT : 3156239 368 : Ile : 368 :!! Val 3156240 : GTC : 3156244 vulgar: gi|528747956|gb|AGS43073.1| 246 368 . KQ414646.1 3155805 3156244 + 210 M 69 207 5 0 2 I 0 69 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155806 3156244 210 + . gene_id 1 ; sequence gi|528747956|gb|AGS43073.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3155806 3156012 . + . KQ414646.1 exonerate:protein2genome:local exon 3155806 3156012 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3156013 3156014 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3156013 3156085 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3156084 3156085 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3156086 3156244 . + . KQ414646.1 exonerate:protein2genome:local exon 3156086 3156244 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155806 3156244 210 + . alignment_id 1 ; Query gi|528747956|gb|AGS43073.1| ; Align 3155806 247 207 ; Align 3156086 316 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747956|gb|AGS43073.1| odorant receptor Or4b [Cephus cinctus] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 246 -> 368 Target range: 3164980 -> 3165423 247 : LysValLysAlaAsnValGluLysAlaPheAsnSerIlePheLeuIleGlnIleVa : 265 !:! !!..! !!!.|||.!.:!!! !|||!!. !|||.!.:!! !|||.!! ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3164981 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3165035 266 : lThrSerThrLeuValPheCysValThrAlaLeuThrPheLeuLysHisGluIleL : 284 !! !|||! !! !|||.!!||| !!!.! !! ! !.!. !:!! !:!! : sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---M 3165036 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---A : 3165089 285 : euSerValGluLeuAlaSerValIleLeuTyrPhePheThrMetMetPheGlnLeu : 302 !!......:::.........:::|||||||||! !||| !! !!: |||:!! etAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 3165090 : TGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 3165143 303 : PheLeuPheCysTrpTyrGlyAsnLysValIleLeuLys >>>> Target Int : 316 |||! !!:!|||||||||||||||:!!|||! !! !||| 80 bp PheTyrTyrCysTrpTyrGlyAsnGluValLysHisLys++ 3165144 : TTTTACTATTGCTGGTACGGCAACGAAGTGAAACATAAGgt............... : 3165187 317 : ron 1 >>>> SerThrGluValArgSerAlaValPheGluMetAspTrpIlePr : 330 ||| !:!!:!!! !! ! !:!!|||.!.! ||||||! ! ++SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSe 3165188 : ..........agAGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTC : 3165307 331 : oLeuProGlnAlaIleLysLysAspPheIlePheLeuMetMetArgThrAsnIleP : 349 !||| !.!. !:!!! !:!! .!!:!!.!!:!!|||! |||.!! ! | rLeuAsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgP 3165308 : TTTGAACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGC : 3165364 350 : roIleArgPheThrSerGlyTyrValValThrLeuSerLeuAspSerPheMetAla : 367 |||||..!||||||||| !:!!||||||:!!:!!!:!|||!!:|||||||||||| roIleGluPheThrSerIleHisValValSerValAsnLeuGluSerPheMetAla 3165365 : CAATAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCA : 3165418 368 : Ile : 368 :!! Val 3165419 : GTC : 3165423 vulgar: gi|528747956|gb|AGS43073.1| 246 368 . KQ414646.1 3164980 3165423 + 166 M 36 108 G 1 0 M 32 96 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164981 3165423 166 + . gene_id 2 ; sequence gi|528747956|gb|AGS43073.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3164981 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164981 3165184 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3165185 3165186 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165185 3165264 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3165263 3165264 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165265 3165423 . + . KQ414646.1 exonerate:protein2genome:local exon 3165265 3165423 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164981 3165423 166 + . alignment_id 2 ; Query gi|528747956|gb|AGS43073.1| ; Align 3164981 247 108 ; Align 3165089 284 96 ; Align 3165265 316 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747956|gb|AGS43073.1| odorant receptor Or4b [Cephus cinctus] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 314 -> 368 Target range: 3178743 -> 3178905 315 : LysSerThrGluValArgSerAlaValPheGluMetAspTrpIleProLeuProGl : 333 :!!||| !:!!||| !!..!|||:!!!:!||||||||||||! !!|||||| GlnSerGluLysValGlyGluAlaIleTyrGluMetAspTrpThrAlaLeuProTh 3178744 : CAGAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTGGACGGCACTTCCCAC : 3178798 334 : nAlaIleLysLysAspPheIlePheLeuMetMetArgThrAsnIleProIleArgP : 352 ! !|||!:!||||||.!.:!:.!.:!!||| !|||:!!!!. !|||:!!!:!. rAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerLysArgProValLysM 3178799 : CGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAAAACGACCTGTTAAAA : 3178855 353 : heThrSerGlyTyrValValThrLeuSerLeuAspSerPheMetAlaIle : 368 !.|||||||||:!!||||||..!|||||| !!!:|||||||||:!!:!! etThrSerGlyHisValValValLeuSerAlaGluSerPheMetSerVal 3178856 : TGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTTATGTCTGTT : 3178905 vulgar: gi|528747956|gb|AGS43073.1| 314 368 . KQ414646.1 3178743 3178905 + 143 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178744 3178905 143 + . gene_id 3 ; sequence gi|528747956|gb|AGS43073.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178744 3178905 . + . KQ414646.1 exonerate:protein2genome:local exon 3178744 3178905 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178744 3178905 143 + . alignment_id 3 ; Query gi|528747956|gb|AGS43073.1| ; Align 3178744 315 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747956|gb|AGS43073.1| odorant receptor Or4b [Cephus cinctus] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 310 -> 368 Target range: 3150854 -> 3151028 311 : LysValIleLeuLysSerThrGluValArgSerAlaValPheGluMetAspTrpIl : 329 ::: !|||:!!:!!|||..!|||:!! ! !!.!!:!!||||||||||||||||| ArgProIleIleGlnSerValGluIleValArgThrIlePheGluMetAspTrpIl 3150855 : CGCCCTATCATTCAGAGCGTCGAGATTGTGCGCACGATCTTCGAAATGGATTGGAT : 3150909 330 : eProLeuProGlnAlaIleLysLysAspPheIlePheLeuMetMetArgThrAsnI : 348 |||||||! !.!.!.!||||||||||||!!.||| !!:!! !! |||.!!! | eProLeuGlnAsnGlyIleLysLysAspLeuIleValValAlaArgArgAlaMetI 3150910 : ACCTCTCCAGAACGGTATCAAGAAGGATTTGATAGTCGTGGCGAGAAGAGCGATGA : 3150966 349 : leProIleArgPheThrSerGlyTyrValValThrLeuSerLeuAspSerPheMet : 366 ||||||||..!!!.|||!!!!.!|||:!! !!|||:!!..!|||:!!!!!|||:!: leProIleGluLeuThrCysAlaTyrMetPheThrMetAspLeuAsnThrPheVal 3150967 : TCCCGATCGAGTTGACCTGCGCGTACATGTTCACCATGGACTTGAACACCTTCGTC : 3151020 367 : AlaIle : 368 ::!:!! SerVal 3151021 : AGCGTC : 3151028 vulgar: gi|528747956|gb|AGS43073.1| 310 368 . KQ414646.1 3150854 3151028 + 140 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150855 3151028 140 + . gene_id 4 ; sequence gi|528747956|gb|AGS43073.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150855 3151028 . + . KQ414646.1 exonerate:protein2genome:local exon 3150855 3151028 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150855 3151028 140 + . alignment_id 4 ; Query gi|528747956|gb|AGS43073.1| ; Align 3150855 311 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747956|gb|AGS43073.1| odorant receptor Or4b [Cephus cinctus] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 135 Query range: 118 -> 206 Target range: 3177901 -> 3178165 119 : ThrCysArgSerAsnThrLeuAsnLeuPheThrMetMetMetSerCysAlaMetCy : 137 :!!! !|||!.! |||:!! !!! ! ! !:!!! |||..!|||.!.! SerSerArgLysLeuThrIleTyrCysGluIleLeuAsnGluSerAlaAlaPheLe 3177902 : TCTTCCAGAAAACTGACAATCTACTGCGAGATCCTGAACGAATCCGCCGCATTCTT : 3177956 138 : sLeuThrLeuGluSerLeuLeuTyrHisValAsnAspArgLeuLeuProMetLysI : 156 !|||:!!! !..!! ! ! ! !:!!..!..!!:! !||||||!!:... uAlaThrValAlaGlnTyrAsnGluPheIleArgSerLysThrLeuProIleSerA 3177957 : AGCTACGGTAGCACAGTACAACGAATTCATACGCTCCAAGACTTTGCCAATATCCG : 3178013 157 : leTrpLeuProTyrSerLeuSerSerLeuThrLeuPheSerLeuSerPheLeuTyr : 174 !|||:!!||||||..!|||||||||! !! !|||!:!!!!:!!|||.!.|||:!! spTrpValProTyrAspLeuSerSerGlnLysLeuTyrThrIleSerLeuLeuHis 3178014 : ACTGGGTGCCTTACGATTTGTCCTCGCAAAAATTGTACACGATATCTCTGTTGCAT : 3178067 175 : GlnValValThrMetThrLeuAlaAsnAlaIleThrValAlaAsnAspThrTyrIl : 193 |||..!:!! !:!!! !:!!..! !! !!:!|||||||||!!:||| !|| GlnThrIleGlyLeuMetValCysAlaAsnThrSerValAlaAsnGluThrLeuIl 3178068 : CAAACGATAGGCCTGATGGTCTGTGCGAACACCAGCGTGGCAAACGAAACACTTAT : 3178124 194 : eThrGlyLeuMetIleGluIleCysAlaGlnLeuGluIle : 206 |.!!||||||||||||:!! ! !!||||||!!!|||||| eAlaGlyLeuMetIleGlnAlaGlyAlaGlnPheGluIle 3178125 : CGCAGGGCTGATGATACAAGCTGGCGCGCAATTCGAGATA : 3178165 vulgar: gi|528747956|gb|AGS43073.1| 118 206 . KQ414646.1 3177901 3178165 + 135 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3177902 3178165 135 + . gene_id 5 ; sequence gi|528747956|gb|AGS43073.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3177902 3178165 . + . KQ414646.1 exonerate:protein2genome:local exon 3177902 3178165 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3177902 3178165 135 + . alignment_id 5 ; Query gi|528747956|gb|AGS43073.1| ; Align 3177902 119 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747956|gb|AGS43073.1| odorant receptor Or4b [Cephus cinctus] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 0 -> 119 Target range: 3159620 -> 3159977 1 : MetGluValLeuProLeuCysPheLysLeuTrpThrLeuSerGlyValTrpArgPr : 19 |||.!...!|||! !|||! !!.||| !! !|||:!!!!!||| ! ||||| MetHisThrLeuGlnLeuSerLeuLysThrLeuThrIleCysGlyTyrIleArgPr 3159621 : ATGCACACGTTGCAATTGTCGTTGAAAACTTTGACGATTTGCGGCTACATAAGGCC : 3159675 20 : oMetHisTyrSerSerProValSerLysSerLeuTyrThrValTyrSerLeuAlaV : 38 |! !::!.!||||||! ! !||| !||||||!.!|||:!!!!!:!!.!!| oThrSerTrpLysSerProGlyLeuLysLeuLeuTyrAsnValHisThrValThrV 3159676 : AACATCGTGGAAGTCACCGGGGCTAAAGCTTCTCTATAACGTACACACGGTTACTG : 3159732 39 : alLeuIleThrLeuTyrSerLeuThrPhePheGluPheLeuAspIleValPheAsn : 56 ||:!!:!!..!||| !!!!!!! ! !! !:!!.!.|||||||||:::|||||| alValValValLeuSerThrPhePheValAlaGlnIleLeuAspIleIlePheAsn 3159733 : TAGTGGTAGTTCTTAGCACGTTTTTCGTCGCCCAGATATTggacattattttcaac : 3159786 57 : PheGlySerLeuAspAspPheAlaAsnThrAlaPheLeuLeuLeuSerMetIleIl : 75 ! !!:!! !|||!!:|||::!:!!!.! !! !:!! !! !!!!:!!!!:! ValGluAsnGlnAspGluPheSerAspAsnPheCysIleThrCysCysValMetAs 3159787 : gtgGAGAATCAAGACGAGTTTAGCGACAATTTCTGCATAACGTGCTGCGTGATGAA : 3159843 76 : eIleCysCysLysAlaThrAsnThrLeuLysLysArgAlaGlnIleIleGluIleH : 94 !! ! ! ! ||| ! !!:! !|||! ! !|||! !..!||| !.!.:!! nSerLeuGlyLysLeuTyrSerLeuLeuIleGlyArgGluMetIleGlnAsnLeuI 3159844 : CAGCCTTGGAAAGTTGTACAGCTTGCTGATAGGACGAGAAATGATCCAAAATTTAA : 3159900 95 : isAspLeuLeuArgAlaGluIleCysArgGlyGlnAsnThrThrGluAsnLeuMet : 112 |||! !|||!:!::!!!: ! !||| ! !:!! !..!|||||| !!!: leAspSerLeuGlnSerAspProLeuArgProLeuAspGluValGluAsnGluIle 3159901 : TAGACTCGCTACAAAGTGACCCTCTTAGGCCGTTGGACGAAGTGGAGAATGAAATT : 3159954 113 : LeuGluLysPheAlaLysThr : 119 ! ! !!:! !! !|||||| ArgLeuArgHisGluLysThr 3159955 : CGATTGAGACACGAGAAGACA : 3159977 vulgar: gi|528747956|gb|AGS43073.1| 0 119 . KQ414646.1 3159620 3159977 + 126 M 119 357 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3159621 3159977 126 + . gene_id 6 ; sequence gi|528747956|gb|AGS43073.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3159621 3159977 . + . KQ414646.1 exonerate:protein2genome:local exon 3159621 3159977 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3159621 3159977 126 + . alignment_id 6 ; Query gi|528747956|gb|AGS43073.1| ; Align 3159621 1 357 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747956|gb|AGS43073.1| odorant receptor Or4b [Cephus cinctus] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 245 -> 368 Target range: 3160720 -> 3162713 246 : PheLysValLysAlaAsnValGluLysAlaPheAsnSerIlePheLeuIleGlnIl : 264 |||!:! !! ! !! !:!!.!. ! !|||!:!! !! .!. !! |||.! PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3160721 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3160775 265 : eValThrSerThrLeuValPheCysValThrAlaLeuThrPheLeuLysHisGluI : 283 !:!!..!!!!|||:!!..!.!.||| !!!.! !!!! !.!. !:!! !:!!: eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3160776 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3160832 284 : leLeuSerValGluLeuAlaSerValIleLeuTyrPhePheThrMetMetPheGln : 301 !:! !||| !! |||||| :!!|||! !!:!.!. !!!:!:!!.!. ||| alTyrSerGlnValLeuAla---LeuIleProPheMetValSerValPheAlaGln 3160833 : TGTATTCGCAAGTTTTAGCA---TTGATACCGTTCATGGTCAGTGTGTTCGCACAG : 3160883 302 : LeuPheLeuPheCysTrpTyrGlyAsnLysValIleLeuLys >>>> Target : 316 :!!|||! !! !|||||||||||||||:!!..!! !:!!||| 162 IlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLys++ 3160884 : ATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGgt............ : 3160930 317 : Intron 1 >>>> SerThrGluValArgSerAlaVal----PheGluMetAspT : 328 3 bp !.!! !! ||| :::####|||:!!:!!|||| ++LysArgAlaSerArgPheLeuIle####PheGlnLeuAspT 3160931 : .............agAAAAGAGCCTCgagatttttaatatcatttcCAACTGGACT : 3162591 329 : rpIleProLeuProGlnAlaIleLysLysAspPheIlePheLeuMetMetArgThr : 346 ||! !|||!!! !:!!||| !|||::!:!! !:!! !:!!|||||||||.!! rpThrProPheAspLysAlaAlaLysArgAsnThrLeuThrMetMetMetArgAla 3162592 : GGACACCATTCGATAAAGCTGCTAAACGAAATACTCTAACCATGATGATGCGTGCA : 3162645 347 : AsnIleProIleArgPheThrSerGlyTyrValValThrLeuSerLeuAspSerPh : 365 ::: !! !|||..!.!!! !|||! ! !|||:!!:!!:!!!:!||||||||||| SerSerLeuIleGluIleIleSerValArgValLeuSerValAsnLeuAspSerPh 3162646 : TCGTCTCTGATCGAAATCATCAGCGTTCGTGTGCTCTCCGTGAATCTAGATTCGTT : 3162702 366 : eMetAlaIle : 368 |:!:|||::: eValAlaVal 3162703 : CGTCGCTGtc : 3162713 vulgar: gi|528747956|gb|AGS43073.1| 245 368 . KQ414646.1 3160720 3162713 + 118 M 44 132 G 1 0 M 25 75 5 0 2 I 0 1619 3 0 2 M 8 24 F 0 4 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160721 3162713 118 + . gene_id 7 ; sequence gi|528747956|gb|AGS43073.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3160721 3160927 . + . KQ414646.1 exonerate:protein2genome:local exon 3160721 3160927 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3160928 3160929 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3160928 3162550 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3162549 3162550 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3162551 3162713 . + . KQ414646.1 exonerate:protein2genome:local exon 3162551 3162713 . + . insertions 0 ; deletions 0 ; frameshifts 4 KQ414646.1 exonerate:protein2genome:local similarity 3160721 3162713 118 + . alignment_id 7 ; Query gi|528747956|gb|AGS43073.1| ; Align 3160721 246 132 ; Align 3160853 291 75 ; Align 3162551 316 24 ; Align 3162579 324 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747956|gb|AGS43073.1| odorant receptor Or4b [Cephus cinctus] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 262 -> 315 Target range: 3180508 -> 3180667 263 : GlnIleValThrSerThrLeuValPheCysValThrAlaLeuThrPheLeuLysHi : 281 |||.!! !! !||| !:!!|||.!!|||:!!!:! !:!! !!!.|||!!. GlnPhePheGlySerPheMetValIleCysLeuSerLeuIleGlnLeuLeuAsnAl 3180509 : CAGTTTTTCGGAAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTTAAACGC : 3180563 282 : sGluIleLeuSerValGluLeuAlaSerValIleLeuTyrPhePheThrMetMetP : 300 !!:|||||||||..!|||!!! !:!!..!|||...|||... :::::::!!. aAspIleLeuSerThrGluPheLeuAlaThrIlePheTyrLeuSerSerIleLeuL 3180564 : AGATATTCTCAGCACCGAATTCTTAGCGACGAtattttatctgagctcgatACTGC : 3180620 301 : heGlnLeuPheLeuPheCysTrpTyrGlyAsnLysValIleLeuLys : 315 !.||| !||||||!:!|||||||||||||||:!!|||! ! !||| euGlnSerPheLeuTyrCysTrpTyrGlyAsnGluValArgThrLys 3180621 : TGCAGAGCTTTCTTTACTGTTGGTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: gi|528747956|gb|AGS43073.1| 262 315 . KQ414646.1 3180508 3180667 + 116 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180509 3180667 116 + . gene_id 8 ; sequence gi|528747956|gb|AGS43073.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180509 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180509 3180667 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180509 3180667 116 + . alignment_id 8 ; Query gi|528747956|gb|AGS43073.1| ; Align 3180509 263 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747954|gb|AGS43072.1| odorant receptor Or4a [Cephus cinctus] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 252 Query range: 238 -> 366 Target range: 3178378 -> 3178917 239 : IlePheLysPheAlaSerAlaValGluSerValSerAsnProIleThrIleValGl : 257 ||| :::|||.!!..!.!!|||.!.!!!|||! !.!. !!!:! !.!!:!!|| IleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLeuGl 3178379 : atttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCTGCA : 3178433 258 : nPheCysAlaSerAlaValAlaLeuCysSerSerValTyrGlnLeuSerLysHisS : 276 ||||! ! !|||:!!..!!.!||||||! !|||:!!|||:!!:!!|||! ! !! nPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrIleA 3178434 : ATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGATTA : 3178490 277 : erValAspSerAlaLysPheMetProLeuIleLeuTyrLeuLeuCysMetLeuPhe : 294 :! ! !||| !!!.|||:!: !! ! !! !||||||! !||||||||| snProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeuThr 3178491 : ATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTCACG : 3178544 295 : GlnLeuPhePheTyrCysTrpTyrGlyAsnGluValIleLeuLys >>>> Targ : 310 |||:!!!:!!!.|||||||||!:!||||||||||||! |||||| GlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys++ 3178545 : CAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAGgt......... : 3178594 311 : et Intron 1 >>>> SerMetGluValArgAspAlaValTyrGluMetAspTr : 322 155 bp ||| :!!||| !!!!:|||:!!|||||||||||||| ++SerGluLysValGlyGluAlaIleTyrGluMetAspTr 3178595 : ................agAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGACTG : 3178783 323 : pIleLeuLeuAspAsnAsnAsnLysLysAlaLeuLeuMetMetMetLysArgSerG : 341 |! !||| !!.!:!!! !:!|||! !||||||:!!!!:||| !||||||: pThrAlaLeuProThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgSerL 3178784 : GACGGCACTTCCCACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGATCAA : 3178840 342 : luArgSerIleGlnIleLysSerGlyTyrPheIleAlaLeuSerValGluProTyr : 359 !!||| !!:!!:!!!!:! !||||||:!! !!:!!!.!||||||!.!||| !!!:! ysArgProValLysMetThrSerGlyHisValValValLeuSerAlaGluSerPhe 3178841 : AACGACCTGTTAAAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCATTT : 3178894 360 : IleLysIleLeuLysAlaSer : 366 !!:...:!! !!:! !||| MetSerValSerArgIleSer 3178895 : ATGTCTGTTAGTAGAATTTCC : 3178917 vulgar: gi|528747954|gb|AGS43072.1| 238 366 . KQ414646.1 3178378 3178917 + 252 M 71 213 5 0 2 I 0 151 3 0 2 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178379 3178917 252 + . gene_id 1 ; sequence gi|528747954|gb|AGS43072.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3178379 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178379 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178592 3178593 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3178592 3178746 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3178745 3178746 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3178747 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178747 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178379 3178917 252 + . alignment_id 1 ; Query gi|528747954|gb|AGS43072.1| ; Align 3178379 239 213 ; Align 3178747 310 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747954|gb|AGS43072.1| odorant receptor Or4a [Cephus cinctus] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 222 Query range: 240 -> 362 Target range: 3164980 -> 3165423 241 : LysPheAlaSerAlaValGluSerValSerAsnProIleThrIleValGlnPheCy : 259 !:!|||:!!!.! !|||.!...!! !! !!!.! !||| !||| !|||||||| ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3164981 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3165035 260 : sAlaSerAlaValAlaLeuCysSerSerValTyrGlnLeuSerLysHisSerValA : 278 | !||| ! !!.!:!!|||! !!:!:!!|||!:!:!!!!!:!! !!.!:!!| sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetA 3165036 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGG : 3165092 279 : spSerAlaLysPheMetProLeuIleLeuTyrLeuLeuCysMetLeuPheGlnLeu : 296 ||::: ||||||::: :::|||||||||! !!!!|||! :!! |||:!! spThr---LysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 3165093 : Acacg---aaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 3165143 297 : PhePheTyrCysTrpTyrGlyAsnGluValIleLeuLys >>>> Target Int : 310 |||!:!||||||||||||||||||||||||! !! !||| 80 bp PheTyrTyrCysTrpTyrGlyAsnGluValLysHisLys++ 3165144 : TTTTACTATTGCTGGTACGGCAACGAAGTGAAACATAAGgt............... : 3165187 311 : ron 1 >>>> SerMetGluValArgAspAlaValTyrGluMetAspTrpIleLe : 324 |||:!::!!:!!! ! !! !:!!!:!.!.! ||||||! ! ++SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSe 3165188 : ..........agAGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTC : 3165307 325 : uLeuAspAsnAsnAsnLysLysAlaLeuLeuMetMetMetLysArgSerGluArgS : 343 !|||:!!|||||| !! !:!|||||||||!!:||||||!:!|||:!!! !||| rLeuAsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgP 3165308 : TTTGAACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGC : 3165364 344 : erIleGlnIleLysSerGlyTyrPheIleAlaLeuSerValGluProTyrIleLys : 361 !!|||:!!.!!! ||| !:!! !!:!!:!!:!!!:!:!!||| !!!:!!!: ! roIleGluPheThrSerIleHisValValSerValAsnLeuGluSerPheMetAla 3165365 : CAATAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCA : 3165418 362 : Ile : 362 :!! Val 3165419 : GTC : 3165423 vulgar: gi|528747954|gb|AGS43072.1| 240 362 . KQ414646.1 3164980 3165423 + 222 M 39 117 G 1 0 M 29 87 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164981 3165423 222 + . gene_id 2 ; sequence gi|528747954|gb|AGS43072.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3164981 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164981 3165184 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3165185 3165186 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165185 3165264 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3165263 3165264 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165265 3165423 . + . KQ414646.1 exonerate:protein2genome:local exon 3165265 3165423 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164981 3165423 222 + . alignment_id 2 ; Query gi|528747954|gb|AGS43072.1| ; Align 3164981 241 117 ; Align 3165098 281 87 ; Align 3165265 310 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747954|gb|AGS43072.1| odorant receptor Or4a [Cephus cinctus] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 220 Query range: 0 -> 210 Target range: 3163849 -> 3164589 1 : MetArgThrLeuProValCysPheValIlePheLysPheTrpGlyLeuTrpArgPr : 19 |||!!!..!||| ! ! ! :!!:!:.!!|||.!!! |||! !!::! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 3163850 : ATGAGTGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTACCTGCC : 3163904 20 : oSerAspTyrLeuSer<->TrpMetLysIleLeuTyrAsnIleTyrSerLeuLeuI : 37 | !...!:: !!!! !:: !:! !|||||||||||||||.!!:!!!!! oHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheT 3163905 : CCATTCGTGGACAACGCCGTTCGAAAGGTCTTTGTACAATATCTACGGGGTGTTCT : 3163961 38 : leValValIleMetTyrSerPheMetLeuPheGluPheIleAspValPheIleAsn : 55 !:!!:!!:!!:!: !|||.!! |||! :!!.!.:!!|||||| |||||| yrLeuLeuLeuLeuSerSerLeuAlaLeuSerGlnIleLeuAspValAlaIleAsn 3163962 : ACTTGCTTCTTCTAAGCAGCCTCGCCCTCTCGCAAATATTAGACGTAGCGATCAAC : 3164015 56 : IleLysSerIleAspAspPheThrMetAsnSerPheMetLeuValThrPheThrAs : 74 :!::!!||| |||||||||::: ||| ::: !.!..! ! ! ValGluSerGlnAspAspPheSerAspAsnPheSerIleThrAlaValValPheLe 3164016 : GTGGAGAGCCAGGATGACTTCagtgacaatttttctatcaccGCTGTGGTGTTTCT : 3164072 75 : nAlaCysTrpArgValAlaLysIleLeuAlaGlyArgGlyLysIleLeuLysValI : 93 !.!!!! !::!:!:!!:!!! :!!||| ! !!||||||!!..!!:!! :!!| uThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuI 3164073 : CACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGA : 3164129 94 : leAsnLeuLeuThrSerAspTyrCysValAlaValAspLysArgGluValGluIle : 111 ||:!! !||| !!:! ! ! ! ! !!||||||! !..!||| !|||||| leAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIle 3164130 : TCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATT : 3164183 112 : LysGluGlyTyrAspGlyIleAlaArgTrp{As} >>>> Target Intron 1 : 122 !:!! ! !!:!!!: !|||.!!..!! { } 107 bp ArgAlaLysPheGluLysIleThrGlu***{Va}-+ 3164184 : AGAGCGAAATTCGAGAAGATCACCGAGTAA{GT}tt.................... : 3164220 123 : >>>> {n}ThrLeuArgTyrValIleLeuValGlnIleThrValAlaLeuMetL : 138 {!}|||:!! !!||| !! !|||:!! !||| !!.! !! !!!:! +-{l}ThrIleGlyTyrTrpSerLeuLeuLeuIleCysAlaPheTrpIleT 3164221 : .....aa{C}ACGATTGGCTACTGGAGTTTACTATTAATTTGTGCGTTCTGGATAT : 3164371 139 : euIleValProLeuSerAsnGluSerArgLysArgIleLeuProPheArgSerTrp : 156 !:!: ! !!|||! !!..!!:! !!!!!..|||! !||| !||||||:!!||| yrValArgSerLeuLeuThrAspPheSerSerArgLysLeuMetPheArgAlaTrp 3164372 : ACGTGAGATCGCTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGCATGG : 3164425 157 : LeuProTyrAspLeuSerSerLeuLysLeuPheTrpLeuSerTyrValHisGlnCy : 175 ||||||||||||! !||| !! ! :!!||| |||!!!!:!|||||||||.. LeuProTyrAspTyrSerProAlaProIlePheIleLeuThrPheValHisGlnAl 3164426 : TTACCCTACGATTACTCCCCTGCGCCCATTTTTATCCTTACCTTCGTCCATCAAGC : 3164482 176 : sIleAlaIleMetAlaAlaAlaTyrIleAsnValAlaThrAspSerPheIleSerG : 194 !|||||| ! ! !..!..! ! !:!|||.!!..!||||||.!. !!!!| aIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrG 3164483 : TATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTG : 3164539 195 : lyLeuMetIleGlnIleCysSerGlnLeuAspIleLeuLysTyrArgLeu : 210 |||||:!!|||.!.|||! !!!!|||!!!!!:||||||:!!:!!|||||| lyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeu 3164540 : GCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTA : 3164589 vulgar: gi|528747954|gb|AGS43072.1| 0 210 . KQ414646.1 3163849 3164589 + 220 M 24 72 G 0 3 M 97 291 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3163850 3164589 220 + . gene_id 3 ; sequence gi|528747954|gb|AGS43072.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3163850 3164217 . + . KQ414646.1 exonerate:protein2genome:local exon 3163850 3164217 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164218 3164219 . + . intron_id 1 ; splice_site "TT" KQ414646.1 exonerate:protein2genome:local intron 3164218 3164324 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3164323 3164324 . + . intron_id 0 ; splice_site "AA" KQ414646.1 exonerate:protein2genome:local cds 3164325 3164589 . + . KQ414646.1 exonerate:protein2genome:local exon 3164325 3164589 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3163850 3164589 220 + . alignment_id 3 ; Query gi|528747954|gb|AGS43072.1| ; Align 3163850 1 72 ; Align 3163925 25 291 ; Align 3164326 123 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747954|gb|AGS43072.1| odorant receptor Or4a [Cephus cinctus] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 213 Query range: 255 -> 362 Target range: 3150646 -> 3151028 256 : ValGlnPheCysAlaSerAlaValAlaLeuCysSerSerValTyrGlnLeuSerLy : 274 ||||||.!!! :!!|||.!!:!!!.!:!!|||! !! !:!!|||:!!|||:!!!! ValGlnLeuLeuSerSerThrLeuValValCysPheIleLeuTyrGluLeuAlaAs 3150647 : GTGCAGCTTTTATCGAGCACGCTGGTAGTGTGTTTCATCCTGTACGAATTGGCGAA : 3150701 275 : sHisSerValAspSerAlaLysPheMetProLeuIleLeuTyrLeuLeuCysMetL : 293 . !! ! !|||:!!|||!:!:!!! !!!!:!!||||||||| !||||||: nThrProProIleSerSerLysTyrLeuGlnPheValLeuTyrLeuAlaCysMetM 3150702 : CACGCCTCCAATCAGCTCCAAGTACCTGCAATTTGTCCTGTACCTGGCCTGTATGA : 3150758 294 : euPheGlnLeuPhePheTyrCysTrpTyrGlyAsnGluValIleLeuLys >>>> : 310 !! |||:!!|||||||||||||||||||||.!.:!!:!!! !|||||| etThrGlnIlePhePheTyrCysTrpTyrGlyGluGlnLeuLysLeuLys++ 3150759 : TGACGCAGATCTTCTTTTACTGCTGGTACGGCGAGCAGTTGAAACTGAAGgt.... : 3150811 311 : Target Intron 1 >>>> SerMetGluValArgAspAlaValTyrGluMet : 320 61 bp |||:!:|||:!! ! !.!!:!!!:!|||||| ++SerValGluIleValArgThrIlePheGluMet 3150812 : .....................agAGCGTCGAGATTGTGCGCACGATCTTCGAAATG : 3150900 321 : AspTrpIleLeuLeuAspAsnAsnAsnLysLysAlaLeuLeuMetMetMetLysAr : 339 |||||||||! !|||.!.|||..!! !||||||! !|||:!!:!::!! !!:!|| AspTrpIleProLeuGlnAsnGlyIleLysLysAspLeuIleValValAlaArgAr 3150901 : GATTGGATACCTCTCCAGAACGGTATCAAGAAGGATTTGATAGTCGTGGCGAGAAG : 3150957 340 : gSerGluArgSerIleGlnIleLysSerGlyTyrPheIleAlaLeuSerValGluP : 358 |:!! !! ! !!|||:!!:!:! !!!!.!|||.!..!!.!!:!!..!:!!.!. gAlaMetIleProIleGluLeuThrCysAlaTyrMetPheThrMetAspLeuAsnT 3150958 : AGCGATGATCCCGATCGAGTTGACCTGCGCGTACATGTTCACCATGGACTTGAACA : 3151014 359 : roTyrIleLysIle : 362 !!!:!:!!!..:!! hrPheValSerVal 3151015 : CCTTCGTCAGCGTC : 3151028 vulgar: gi|528747954|gb|AGS43072.1| 255 362 . KQ414646.1 3150646 3151028 + 213 M 54 162 5 0 2 I 0 57 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150647 3151028 213 + . gene_id 4 ; sequence gi|528747954|gb|AGS43072.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3150647 3150808 . + . KQ414646.1 exonerate:protein2genome:local exon 3150647 3150808 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3150809 3150810 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3150809 3150869 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3150868 3150869 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3150870 3151028 . + . KQ414646.1 exonerate:protein2genome:local exon 3150870 3151028 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150647 3151028 213 + . alignment_id 4 ; Query gi|528747954|gb|AGS43072.1| ; Align 3150647 256 162 ; Align 3150870 310 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747954|gb|AGS43072.1| odorant receptor Or4a [Cephus cinctus] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 207 Query range: 240 -> 362 Target range: 3158452 -> 3158895 241 : LysPheAlaSerAlaValGluSerValSerAsnProIleThrIleValGlnPheCy : 259 !:!|||:!!!.! !|||.!...!! !! !!!.! !||| !||| !|||||||| ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3158453 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3158507 260 : sAlaSerAlaValAlaLeuCysSerSerValTyrGlnLeuSerLysHisSerValA : 278 | !||| ! !!.!:!!|||! !!:!:!!|||!:!:!!!!!:!! !!.!:!!| sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetA 3158508 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGG : 3158564 279 : spSerAlaLysPheMetProLeuIleLeuTyrLeuLeuCysMetLeuPheGlnLeu : 296 ||::: ||||||::: :::|||||||||! !!!!|||! :!! |||:!! spThr---LysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 3158565 : Acacg---aaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 3158615 297 : PhePheTyrCysTrpTyrGlyAsnGluValIleLeuLysSerMetGluValArg{A : 315 |||!:!||||||||||||||||||||||||! ! !||| ! .!. !...{| PheTyrTyrCysTrpTyrGlyAsnGluValLysAspLysValAspHisCysHis{A 3158616 : TTTTACTATTGTTGGTACGGCAACGAAGTGAAAGATAAGGTTGATCATTGTcac{g : 3158672 316 : } >>>> Target Intron 1 >>>> {sp}AlaValTyrGluMetAspTrpI : 323 } 80 bp {||} !:!!!:!.!.! ||||||! }-+ +-{sp}MetIlePheHisSerAspTrpT 3158673 : }at.........................at{AC}ATGATATTTCACAGCGACTGGA : 3158776 324 : leLeuLeuAspAsnAsnAsnLysLysAlaLeuLeuMetMetMetLysArgSerGlu : 341 ! !|||:!!|||||| !! !:!|||||||||!!:||||||!:!|||:!!! ! hrSerLeuAsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaVal 3158777 : CGTCTTTGAACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTG : 3158830 342 : ArgSerIleGlnIleLysSerGlyTyrPheIleAlaLeuSerValGluProTyrIl : 360 ||| !!|||:!!.!!! ||| !:!! !!:!!:!!:!!!:!:!!||| !!!:!!! ArgProIleGluPheThrSerIleHisValValSerValAsnLeuGluSerPheMe 3158831 : AGGCCAATAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCAT : 3158887 361 : eLysIle : 362 : !:!! tAlaVal 3158888 : GGCAGTC : 3158895 vulgar: gi|528747954|gb|AGS43072.1| 240 362 . KQ414646.1 3158452 3158895 + 207 M 39 117 G 1 0 M 34 102 S 0 1 5 0 2 I 0 76 3 0 2 S 1 2 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158453 3158895 207 + . gene_id 5 ; sequence gi|528747954|gb|AGS43072.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3158453 3158672 . + . KQ414646.1 exonerate:protein2genome:local exon 3158453 3158672 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3158673 3158674 . + . intron_id 1 ; splice_site "at" KQ414646.1 exonerate:protein2genome:local intron 3158673 3158752 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3158751 3158752 . + . intron_id 0 ; splice_site "AT" KQ414646.1 exonerate:protein2genome:local cds 3158753 3158895 . + . KQ414646.1 exonerate:protein2genome:local exon 3158753 3158895 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3158453 3158895 207 + . alignment_id 5 ; Query gi|528747954|gb|AGS43072.1| ; Align 3158453 241 117 ; Align 3158570 281 102 ; Align 3158755 316 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747954|gb|AGS43072.1| odorant receptor Or4a [Cephus cinctus] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 120 -> 207 Target range: 3153114 -> 3153375 121 : TrpAsnThrLeuArgTyrValIleLeuValGlnIleThrValAlaLeuMetLeuIl : 139 ||||||.!! ! !|||..! !!!!:!!.!.||| !|||!.!:!!:!:! !|| TrpAsnAlaLysAlaTyrThrTyrPheLeuAspIleLeuValValValLeuTrpIl 3153115 : TGGAACGCTAAGGCTTACACATATTTCCTGGACATCTTGGTAGTCGTTTTATGGAT : 3153169 140 : eValProLeuSerAsnGluSerArgLysArgIleLeuProPheArgSerTrpLeuP : 158 |..! !!! !! !!..!!:! !|||:::||| ... |||||| !||||||| eThrSerTyrPheThrAspTyrArgArgArgLysPheLysPheArgValTrpLeuP 3153170 : AACATCGTACTTCACGGACTACAGGcgcagaaaattcaaatttcgcgtCTGGTTAC : 3153226 159 : roTyrAspLeuSerSerLeuLysLeuPheTrpLeuSerTyrValHisGlnCysIle : 176 |||||||| !!!!!!!! ! :!!||| |||! !||| !!!.||| !:!! roTyrAspThrThrThrGlnProValPheThrLeuIleTyrCysGlnGlnIleVal 3153227 : CTTACGACACTACTACACAACCTGTCTTCACTCTGATCTACTGTCAACAGATCGTC : 3153280 177 : AlaIleMetAlaAlaAlaTyrIleAsnValAlaThrAspSerPheIleSerGlyLe : 195 ..!! ! !::!!.! !!||||||||| ! !|||!!!.!..!!|||||||| CysThrTrpTyrSerValAsnIleAsnValIleCysAspCysLeuPheSerGlyLe 3153281 : TGCACGTGGTACAGCGTGAATATTAACGTCATTTGCGACTGCCTGTTCAGCGGCCT : 3153337 196 : uMetIleGlnIleCysSerGlnLeuAspIleLeuLys : 207 ||||||||||||||||||| ||| ! :!!||| uMetIleGlnIleCysSerIleLeuArgLysMetLys 3153338 : GATGATACAGATTTGCTCAATCTTACGGAAGATGAAA : 3153375 vulgar: gi|528747954|gb|AGS43072.1| 120 207 . KQ414646.1 3153114 3153375 + 159 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153115 3153375 159 + . gene_id 6 ; sequence gi|528747954|gb|AGS43072.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153115 3153375 . + . KQ414646.1 exonerate:protein2genome:local exon 3153115 3153375 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3153115 3153375 159 + . alignment_id 6 ; Query gi|528747954|gb|AGS43072.1| ; Align 3153115 121 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747954|gb|AGS43072.1| odorant receptor Or4a [Cephus cinctus] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 156 Query range: 118 -> 216 Target range: 3177904 -> 3178198 119 : AlaArgTrpAsnThrLeuArgTyrValIleLeuValGlnIleThrValAlaLeuMe : 137 :!!||| |||:!! !! !! !|||||| !:!! !.!!!.! !||| SerArgLysLeuThrIleTyrCysGluIleLeuAsnGluSerAlaAlaPheLeuAl 3177905 : TCCAGAAAACTGACAATCTACTGCGAGATCCTGAACGAATCCGCCGCATTCTTAGC : 3177959 138 : tLeuIleValProLeuSerAsnGluSerArgLysArgIleLeuProPheArgSerT : 156 !:!!!.!! !! !!:!.!. ! !|||...!:!! !||||||.!. !..!| aThrValAlaGlnTyrAsnGluPheIleArgSerLysThrLeuProIleSerAspT 3177960 : TACGGTAGCACAGTACAACGAATTCATACGCTCCAAGACTTTGCCAATATCCGACT : 3178016 157 : rpLeuProTyrAspLeuSerSerLeuLysLeuPheTrpLeuSerTyrValHisGln : 174 ||:!!||||||||||||||||||! !||||||!:! !:!!||| :!!|||||| rpValProTyrAspLeuSerSerGlnLysLeuTyrThrIleSerLeuLeuHisGln 3178017 : GGGTGCCTTACGATTTGTCCTCGCAAAAATTGTACACGATATCTCTGTTGCATCAA : 3178070 175 : CysIleAlaIleMetAlaAlaAlaTyrIleAsnValAlaThrAspSerPheIleSe : 193 |||!.!:!:|||!.!..!||| !!! !!:!||||||!.!!!:!!!.!!|||:! ThrIleGlyLeuMetValCysAlaAsnThrSerValAlaAsnGluThrLeuIleAl 3178071 : ACGATAGGCCTGATGGTCTGTGCGAACACCAGCGTGGCAAACGAAACACTTATCGC : 3178127 194 : rGlyLeuMetIleGlnIleCysSerGlnLeuAspIleLeuLysTyrArgLeuIleL : 212 !||||||||||||||| ! !!:!!|||!!!!!:|||!!! :!!||| !! !! aGlyLeuMetIleGlnAlaGlyAlaGlnPheGluIlePheCysHisArgAlaArgA 3178128 : AGGGCTGATGATACAAGCTGGCGCGCAATTCGAGATATTTTGCCATCGAGCGAGAA : 3178184 213 : ysLeuProArgLeu : 216 !.||| !! !||| snLeuThrAlaLeu 3178185 : ATCTAACCGCCCTA : 3178198 vulgar: gi|528747954|gb|AGS43072.1| 118 216 . KQ414646.1 3177904 3178198 + 156 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3177905 3178198 156 + . gene_id 7 ; sequence gi|528747954|gb|AGS43072.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3177905 3178198 . + . KQ414646.1 exonerate:protein2genome:local exon 3177905 3178198 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3177905 3178198 156 + . alignment_id 7 ; Query gi|528747954|gb|AGS43072.1| ; Align 3177905 119 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747954|gb|AGS43072.1| odorant receptor Or4a [Cephus cinctus] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 240 -> 318 Target range: 3155805 -> 3156039 241 : LysPheAlaSerAlaValGluSerValSerAsnProIleThrIleValGlnPheCy : 259 !:!|||.!!:!! !:!!.!...! !! !.!. ! ! !.!!..!||||||.. ArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAl 3155806 : AGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGC : 3155860 260 : sAlaSerAlaValAlaLeuCysSerSerValTyrGlnLeuSerLysHisSerValA : 278 .!.!|||.!!:!!|||:!!|||! !!:!:!!|||! !|||!!! ! ..!||| aValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValT 3155861 : GGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGA : 3155917 279 : spSerAlaLysPheMetProLeuIleLeuTyrLeuLeuCysMetLeuPheGlnLeu : 296 !! !!:!!:!:!! !:!!|||:!!||| ! !||||||||| |||:!! hrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIle 3155918 : CGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATA : 3155971 297 : PhePheTyrCysTrpTyrGlyAsnGluValIleLeuLysSerMetGluValArgAs : 315 |||.!!||||||||||||||||||||||||! |||||| ! ! !!||| ! PheIleTyrCysTrpTyrGlyAsnGluValLysLeuLysValSerTyrPheArgHi 3155972 : TTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAGGTTTCTTATTTTCGACA : 3156028 316 : pAlaValTyr : 318 !..! !||| sCysSerTyr 3156029 : TTGTTCATAT : 3156039 vulgar: gi|528747954|gb|AGS43072.1| 240 318 . KQ414646.1 3155805 3156039 + 151 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155806 3156039 151 + . gene_id 8 ; sequence gi|528747954|gb|AGS43072.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155806 3156039 . + . KQ414646.1 exonerate:protein2genome:local exon 3155806 3156039 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155806 3156039 151 + . alignment_id 8 ; Query gi|528747954|gb|AGS43072.1| ; Align 3155806 241 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747954|gb|AGS43072.1| odorant receptor Or4a [Cephus cinctus] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 0 -> 112 Target range: 3159620 -> 3159959 1 : MetArgThrLeuProValCysPheValIlePheLysPheTrpGlyLeuTrpArgPr : 19 |||!.!||||||! !:!!! !!. !! !!!.! !.!!!! |||! ! ||||| MetHisThrLeuGlnLeuSerLeuLysThrLeuThrIleCysGlyTyrIleArgPr 3159621 : ATGCACACGTTGCAATTGTCGTTGAAAACTTTGACGATTTGCGGCTACATAAGGCC : 3159675 20 : oSerAspTyrLeuSer<->TrpMetLysIleLeuTyrAsnIleTyrSerLeuLeuI : 37 |!!!...!:: !||| !!:!:|||:!!|||||||||:!!:!!!!!:!! !: oThrSerTrpLysSerProGlyLeuLysLeuLeuTyrAsnValHisThrValThrV 3159676 : AACATCGTGGAAGTCACCGGGGCTAAAGCTTCTCTATAACGTACACACGGTTACTG : 3159732 38 : leValValIleMetTyrSerPheMetLeuPheGluPheIleAspValPheIleAsn : 55 !!||||||:!!:!: !!!!|||.!.:!! !:!!.!.:!:|||:::......||| alValValValLeuSerThrPhePheValAlaGlnIleLeuAspIleIlePheAsn 3159733 : TAGTGGTAGTTCTTAGCACGTTTTTCGTCGCCCAGATATTggacattattttcaac : 3159786 56 : IleLysSerIleAspAspPheThrMetAsnSerPheMetLeuValThrPheThrAs : 74 ::::!!!:! !|||!!:|||!:! |||! !! !!!: ! ! ! ! ! !|| ValGluAsnGlnAspGluPheSerAspAsnPheCysIleThrCysCysValMetAs 3159787 : gtgGAGAATCAAGACGAGTTTAGCGACAATTTCTGCATAACGTGCTGCGTGATGAA : 3159843 75 : nAlaCysTrpArgValAlaLysIleLeuAlaGlyArgGlyLysIleLeuLysValI : 93 |::! ! ! !:!:!! !!..:!:||| !||||||! !! !|||! !!!.:!!| nSerLeuGlyLysLeuTyrSerLeuLeuIleGlyArgGluMetIleGlnAsnLeuI 3159844 : CAGCCTTGGAAAGTTGTACAGCTTGCTGATAGGACGAGAAATGATCCAAAATTTAA : 3159900 94 : leAsnLeuLeuThrSerAspTyrCysValAlaValAspLysArgGluValGluIle : 111 ||:!!! !||| !|||||| ! ! ! !!:!!|||:!! !||| !|||||| leAspSerLeuGlnSerAspProLeuArgProLeuAspGluValGluAsnGluIle 3159901 : TAGACTCGCTACAAAGTGACCCTCTTAGGCCGTTGGACGAAGTGGAGAATGAAATT : 3159954 112 : Lys : 112 ::! Arg 3159955 : CGA : 3159959 vulgar: gi|528747954|gb|AGS43072.1| 0 112 . KQ414646.1 3159620 3159959 + 136 M 24 72 G 0 3 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3159621 3159959 136 + . gene_id 9 ; sequence gi|528747954|gb|AGS43072.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3159621 3159959 . + . KQ414646.1 exonerate:protein2genome:local exon 3159621 3159959 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3159621 3159959 136 + . alignment_id 9 ; Query gi|528747954|gb|AGS43072.1| ; Align 3159621 1 72 ; Align 3159696 25 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747954|gb|AGS43072.1| odorant receptor Or4a [Cephus cinctus] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 254 -> 309 Target range: 3180502 -> 3180667 255 : IleValGlnPheCysAlaSerAlaValAlaLeuCysSerSerValTyrGlnLeuSe : 273 .!!!.!||||||! !!.!||| !:!!!.!:!!||| !|||:!! !||||||! PheAlaGlnPhePheGlySerPheMetValIleCysLeuSerLeuIleGlnLeuLe 3180503 : TTCGCCCAGTTTTTCGGAAGCTTTATGGTGATCTGCCTGAGCCTGATTCAGTTGTT : 3180557 274 : rLysHisSerValAspSerAlaLysPheMetProLeuIleLeuTyrLeuLeuCysM : 292 !!!. ..!:!! !|||.!!:!!|||:!: !! !|||...|||||| : uAsnAlaAspIleLeuSerThrGluPheLeuAlaThrIlePheTyrLeuSerSerI 3180558 : AAACGCAGATATTCTCAGCACCGAATTCTTAGCGACGAtattttatctgagctcga : 3180614 293 : etLeuPheGlnLeuPhePheTyrCysTrpTyrGlyAsnGluValIleLeuLys : 309 ::|||.!.||| !|||.!!||||||||||||||||||||||||! ! !||| leLeuLeuGlnSerPheLeuTyrCysTrpTyrGlyAsnGluValArgThrLys 3180615 : tACTGCTGCAGAGCTTTCTTTACTGTTGGTACGGAAACGAAGTGAGAACGAAG : 3180667 vulgar: gi|528747954|gb|AGS43072.1| 254 309 . KQ414646.1 3180502 3180667 + 122 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180503 3180667 122 + . gene_id 10 ; sequence gi|528747954|gb|AGS43072.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180503 3180667 . + . KQ414646.1 exonerate:protein2genome:local exon 3180503 3180667 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180503 3180667 122 + . alignment_id 10 ; Query gi|528747954|gb|AGS43072.1| ; Align 3180503 255 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747954|gb|AGS43072.1| odorant receptor Or4a [Cephus cinctus] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 0 -> 118 Target range: 3157321 -> 3157678 1 : MetArgThrLeuProValCysPheValIlePheLysPheTrpGlyLeuTrpArgPr : 19 |||!!!..!||| ! ! ! :!!:!:.!!|||.!!! |||! !!::! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 3157322 : ATGAGCGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTATCTGCC : 3157376 20 : oSerAspTyrLeuSer<->TrpMetLysIleLeuTyrAsnIleTyrSerLeuLeuI : 37 | !...!:: !!!! !:: !:! !|||||||||||||||.!!:::... oHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheS 3157377 : CCATTCGTGGACAACACCGTTCGAAAGGTCTTTGTACAATATCTACGGGGtgttct : 3157433 38 : leValValIleMetTyrSerPheMetLeuPheGluPheIleAspValPheIleAsn : 55 ::::::::: !|||.!!:!:|||! :!!.!.:!!|||||| |||||| erPheLeuLeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIleAsn 3157434 : cctttcttcttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCAAC : 3157487 56 : IleLysSerIleAspAspPheThrMetAsnSerPheMetLeuValThrPheThrAs : 74 :!::!!||| |||||||||!:: ||| ::: !!.!..! ! ! ValGluSerGlnAspAspPheSerAspAsnPheSerValThrAlaValValPheLe 3157488 : GTGGAGAGCCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTTCT : 3157544 75 : nAlaCysTrpArgValAlaLysIleLeuAlaGlyArgGlyLysIleLeuLysValI : 93 !.!!!! !::!:!:!!:!!! :!!||| ! !!||||||!!..!!:!! :!!| uThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuI 3157545 : CACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGA : 3157601 94 : leAsnLeuLeuThrSerAspTyrCysValAlaValAspLysArgGluValGluIle : 111 ||:!! !||| !!:! ! ! ! ! !!||||||! !..!||| !|||||| leAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIle 3157602 : TCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATT : 3157655 112 : LysGluGlyTyrAspGlyIle : 118 !:!! ! !!:!!!: !||| ArgAlaLysPheGluLysIle 3157656 : AGAGCGAAATTCGAGAAGATC : 3157678 vulgar: gi|528747954|gb|AGS43072.1| 0 118 . KQ414646.1 3157321 3157678 + 115 M 24 72 G 0 3 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157322 3157678 115 + . gene_id 11 ; sequence gi|528747954|gb|AGS43072.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3157322 3157678 . + . KQ414646.1 exonerate:protein2genome:local exon 3157322 3157678 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3157322 3157678 115 + . alignment_id 11 ; Query gi|528747954|gb|AGS43072.1| ; Align 3157322 1 72 ; Align 3157397 25 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747954|gb|AGS43072.1| odorant receptor Or4a [Cephus cinctus] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 241 -> 305 Target range: 3153456 -> 3153645 242 : PheAlaSerAlaValGluSerValSerAsnProIleThrIleValGlnPheCysAl : 260 !!.|||..! !|||.!...! ! !... !:!!:!!! !:!!||||||... LeuAlaGlnIleValAsnGluLysLeuGlyAsnValSerSerIleGlnPheAlaIl 3153457 : TTGGCGCAAATAGTGAACGAGAAGCTTGGAAATGTCTCGAGTATACAGTTCGCGAT : 3153511 261 : aSerAlaValAlaLeuCysSerSerValTyrGlnLeuSerLysHisSerValAspS : 279 !|||.!!! !|||:!!|||! !!:!:!!|||!:!:!!||| ! ..!:!! . eSerThrGlyAlaIleCysPheAsnLeuTyrArgMetSerValIleGluLeu---G 3153512 : AAGCACAGGAGCGATATGCTTCAATCTCTATCGAATGTCGGTGATAGAACTC---G : 3153565 280 : erAlaLysPheMetProLeuIleLeuTyrLeuLeuCysMetLeuPheGlnLeuPhe : 297 !! !!||||||:!! ! !:!! ! ! !:!!|||:!:||| |||:!!||| lyProLysPheValGluAlaLeuThrIleThrValCysLeuLeuAlaGlnIlePhe 3153566 : GTCCAAAGTTTGTGGAAGCGTTAACTATCACAGTATGCTTACTCGCGCAGATATTT : 3153619 298 : PheTyrCysTrpTyrGlyAsnGlu : 305 !:!||||||||||||||||||::: TyrTyrCysTrpTyrGlyAsnAsp 3153620 : TACTATTGTTGGTAcggtaacgat : 3153645 vulgar: gi|528747954|gb|AGS43072.1| 241 305 . KQ414646.1 3153456 3153645 + 110 M 36 108 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153457 3153645 110 + . gene_id 12 ; sequence gi|528747954|gb|AGS43072.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153457 3153645 . + . KQ414646.1 exonerate:protein2genome:local exon 3153457 3153645 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3153457 3153645 110 + . alignment_id 12 ; Query gi|528747954|gb|AGS43072.1| ; Align 3153457 242 108 ; Align 3153565 279 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747954|gb|AGS43072.1| odorant receptor Or4a [Cephus cinctus] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 239 -> 320 Target range: 3160720 -> 3160960 240 : PheLysPheAlaSerAlaValGluSerValSerAsnProIleThrIleValGlnPh : 258 |||!:!||||||..! !:!!.!.:!! !! !!:! !! ! ! !..!||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3160721 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3160775 259 : eCysAlaSerAlaValAlaLeuCysSerSerValTyrGlnLeuSerLysHisSerV : 277 | !.!!!!.!!:!!.!!:!!|||! !!:!:!!!:!!:!|||!!!:!! !!.!| eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3160776 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3160832 278 : alAspSerAlaLysPheMetProLeuIleLeuTyrLeuLeuCysMetLeuPheGln : 295 || !!||| :!! !!:!: !!||||||! !!:!:!!:!! !!:!!!!! ||| alTyrSer---GlnValLeuAlaLeuIleProPheMetValSerValPheAlaGln 3160833 : TGTATTCG---CAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAG : 3160883 296 : LeuPhePheTyrCysTrpTyrGlyAsnGluValIleLeuLysSerMetGluValAr : 314 :!!|||!:!! !||||||||||||||||||..!! !:!!||| ! !!: !! IlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLysValArgAspGlnTh 3160884 : ATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGGTACGTGATCAAAC : 3160940 315 : gAspAlaValTyrGluMet : 320 !||| !::::::...::: rAspPheLeuPheSerIle 3160941 : AGACTTCttattctcaatt : 3160960 vulgar: gi|528747954|gb|AGS43072.1| 239 320 . KQ414646.1 3160720 3160960 + 106 M 40 120 G 1 0 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160721 3160960 106 + . gene_id 13 ; sequence gi|528747954|gb|AGS43072.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160721 3160960 . + . KQ414646.1 exonerate:protein2genome:local exon 3160721 3160960 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3160721 3160960 106 + . alignment_id 13 ; Query gi|528747954|gb|AGS43072.1| ; Align 3160721 240 120 ; Align 3160841 281 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747954|gb|AGS43072.1| odorant receptor Or4a [Cephus cinctus] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 239 -> 320 Target range: 3174931 -> 3175171 240 : PheLysPheAlaSerAlaValGluSerValSerAsnProIleThrIleValGlnPh : 258 |||!:!||||||..! !:!!.!.:!! !! !!:! !! ! ! !..!||||| PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPh 3174932 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATT : 3174986 259 : eCysAlaSerAlaValAlaLeuCysSerSerValTyrGlnLeuSerLysHisSerV : 277 | !.!!!!.!!:!!.!!:!!|||! !!:!:!!!:!!:!|||!!!:!! !!.!| eLeuValThrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysV 3174987 : TCTGGTGACCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGG : 3175043 278 : alAspSerAlaLysPheMetProLeuIleLeuTyrLeuLeuCysMetLeuPheGln : 295 || !!||| :!! !!:!: !!||||||! !!:!:!!:!! !!:!!!!! ||| alTyrSer---GlnValLeuAlaLeuIleProPheMetValSerValPheAlaGln 3175044 : TGTATTCG---CAAGTTTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAG : 3175094 296 : LeuPhePheTyrCysTrpTyrGlyAsnGluValIleLeuLysSerMetGluValAr : 314 :!!|||!:!! !||||||||||||||||||..!! !:!!||| ! !!: !! IlePheTyrCysCysTrpTyrGlyAsnGluThrLysValLysValArgAspGlnTh 3175095 : ATATTTTATTGTTGCTGGTATGGAAACGAGACCAAAGTGAAGGTACGTGATCAAAC : 3175151 315 : gAspAlaValTyrGluMet : 320 !||| !::::::...::: rAspPheLeuPheSerIle 3175152 : AGACTTCttattctcaatt : 3175171 vulgar: gi|528747954|gb|AGS43072.1| 239 320 . KQ414646.1 3174931 3175171 + 106 M 40 120 G 1 0 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3174932 3175171 106 + . gene_id 14 ; sequence gi|528747954|gb|AGS43072.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3174932 3175171 . + . KQ414646.1 exonerate:protein2genome:local exon 3174932 3175171 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3174932 3175171 106 + . alignment_id 14 ; Query gi|528747954|gb|AGS43072.1| ; Align 3174932 240 120 ; Align 3175052 281 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747956|gb|AGS43073.1| odorant receptor Or4b [Cephus cinctus] Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 165 Query range: 246 -> 368 Target range: 1946251 -> 1945808 247 : LysValLysAlaAsnValGluLysAlaPheAsnSerIlePheLeuIleGlnIleVa : 265 !:! !!..! !!!.|||.!.:!!! !|||!!. !|||.!.:!! !|||.!! ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 1946251 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 1946197 266 : lThrSerThrLeuValPheCysValThrAlaLeuThrPheLeuLysHisGluIleL : 284 !! !|||! !! !|||.!!||| !!!.! !! ! !.!. !:!! !:!! : sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---M 1946196 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---A : 1946143 285 : euSerValGluLeuAlaSerValIleLeuTyrPhePheThrMetMetPheGlnLeu : 302 !!......:::.........:::|||||||||! !||| !! !!: |||:!! etAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 1946142 : TGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 1946089 303 : PheLeuPheCysTrpTyrGlyAsnLysValIleLeuLys >>>> Target Int : 316 |||! !!:!|||||||||||||||:!!|||! ! !||| 80 bp PheTyrTyrCysTrpTyrGlyAsnGluValLysAspLys++ 1946088 : TTTTACTATTGCTGGTACGGCAACGAAGTGAAAGATAAGgt............... : 1946045 317 : ron 1 >>>> SerThrGluValArgSerAlaValPheGluMetAspTrpIlePr : 330 ||| !:!!:!!! !! ! !:!!|||.!.! ||||||! ! ++SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSe 1946044 : ..........agAGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTC : 1945925 331 : oLeuProGlnAlaIleLysLysAspPheIlePheLeuMetMetArgThrAsnIleP : 349 !||| !.!. !:!!! !:!! .!!:!!.!!:!!|||! |||.!! ! | rLeuAsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgP 1945924 : TTTGAACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGC : 1945868 350 : roIleArgPheThrSerGlyTyrValValThrLeuSerLeuAspSerPheMetAla : 367 |||||..!||||||||| !:!!||||||:!!:!!!:!|||!!:|||||||||||| roIleGluPheThrSerIleHisValValSerValAsnLeuGluSerPheMetAla 1945867 : CAATAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCA : 1945814 368 : Ile : 368 :!! Val 1945813 : GTC : 1945809 vulgar: gi|528747956|gb|AGS43073.1| 246 368 . KQ414661.1 1946251 1945808 - 165 M 36 108 G 1 0 M 32 96 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945809 1946251 165 - . gene_id 1 ; sequence gi|528747956|gb|AGS43073.1| ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1946048 1946251 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946251 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local splice5 1946046 1946047 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945968 1946047 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1945968 1945969 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945809 1945967 . - . KQ414661.1 exonerate:protein2genome:local exon 1945809 1945967 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945809 1946251 165 - . alignment_id 1 ; Query gi|528747956|gb|AGS43073.1| ; Align 1946252 247 108 ; Align 1946144 284 96 ; Align 1945968 316 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747956|gb|AGS43073.1| odorant receptor Or4b [Cephus cinctus] Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 315 -> 368 Target range: 1948618 -> 1948459 316 : SerThrGluValArgSerAlaValPheGluMetAspTrpIleProLeuProGlnAl : 334 ||| !|||:!! !!:! !:!!|||.!.:!:||||||! !|||!!! !:!!|| SerLeuGluIleSerAsnMetIlePheHisLeuAspTrpThrProPheAspLysAl 1948618 : AGCCTCGAGATTTCTAATATGATTTTTCACCTCGACTGGACACCGTTCGATAAAGC : 1948564 335 : aIleLysLysAspPheIlePheLeuMetMetArgThrAsnIleProIleArgPheT : 353 |! !|||::!:!!.!.:!! !:!!|||||||||.!!::: ||||||..!.!!! aThrLysArgAsnIleLeuThrMetMetMetArgAlaSerSerProIleGluIleI 1948563 : TACAAAACGAAATATACTAACTATGATGATGCGTGCGTCGTCGCCAATTGAAATCA : 1948507 354 : hrSerGlyTyrValValThrLeuSerLeuAspSerPheMetAlaIle : 368 !|||! ! !|||:!!:!!:!!!:!||||||||||||:!:|||:!! leSerValArgValLeuSerValAsnLeuAspSerPheValAlaVal 1948506 : TCAGCGTTCGTGTGCTCTCCGTGAATCTCGATTCGTTCGTCGCTGTC : 1948460 vulgar: gi|528747956|gb|AGS43073.1| 315 368 . KQ414661.1 1948618 1948459 - 116 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1948460 1948618 116 - . gene_id 2 ; sequence gi|528747956|gb|AGS43073.1| ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1948460 1948618 . - . KQ414661.1 exonerate:protein2genome:local exon 1948460 1948618 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1948460 1948618 116 - . alignment_id 2 ; Query gi|528747956|gb|AGS43073.1| ; Align 1948619 316 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747954|gb|AGS43072.1| odorant receptor Or4a [Cephus cinctus] Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 221 Query range: 240 -> 362 Target range: 1946251 -> 1945808 241 : LysPheAlaSerAlaValGluSerValSerAsnProIleThrIleValGlnPheCy : 259 !:!|||:!!!.! !|||.!...!! !! !!!.! !||| !||| !|||||||| ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 1946251 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 1946197 260 : sAlaSerAlaValAlaLeuCysSerSerValTyrGlnLeuSerLysHisSerValA : 278 | !||| ! !!.!:!!|||! !!:!:!!|||!:!:!!!!!:!! !!.!:!!| sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLysMetA 1946196 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAAATGG : 1946140 279 : spSerAlaLysPheMetProLeuIleLeuTyrLeuLeuCysMetLeuPheGlnLeu : 296 ||::: ||||||::: :::|||||||||! !!!!|||! :!! |||:!! spThr---LysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 1946139 : Acacg---aaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 1946089 297 : PhePheTyrCysTrpTyrGlyAsnGluValIleLeuLys >>>> Target Int : 310 |||!:!||||||||||||||||||||||||! ! !||| 80 bp PheTyrTyrCysTrpTyrGlyAsnGluValLysAspLys++ 1946088 : TTTTACTATTGCTGGTACGGCAACGAAGTGAAAGATAAGgt............... : 1946045 311 : ron 1 >>>> SerMetGluValArgAspAlaValTyrGluMetAspTrpIleLe : 324 |||:!::!!:!!! ! !! !:!!!:!.!.! ||||||! ! ++SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSe 1946044 : ..........agAGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTC : 1945925 325 : uLeuAspAsnAsnAsnLysLysAlaLeuLeuMetMetMetLysArgSerGluArgS : 343 !|||:!!|||||| !! !:!|||||||||!!:||||||!:!|||:!!! !||| rLeuAsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgP 1945924 : TTTGAACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGC : 1945868 344 : erIleGlnIleLysSerGlyTyrPheIleAlaLeuSerValGluProTyrIleLys : 361 !!|||:!!.!!! ||| !:!! !!:!!:!!:!!!:!:!!||| !!!:!!!: ! roIleGluPheThrSerIleHisValValSerValAsnLeuGluSerPheMetAla 1945867 : CAATAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCA : 1945814 362 : Ile : 362 :!! Val 1945813 : GTC : 1945809 vulgar: gi|528747954|gb|AGS43072.1| 240 362 . KQ414661.1 1946251 1945808 - 221 M 39 117 G 1 0 M 29 87 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945809 1946251 221 - . gene_id 1 ; sequence gi|528747954|gb|AGS43072.1| ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1946048 1946251 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946251 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local splice5 1946046 1946047 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945968 1946047 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1945968 1945969 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945809 1945967 . - . KQ414661.1 exonerate:protein2genome:local exon 1945809 1945967 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945809 1946251 221 - . alignment_id 1 ; Query gi|528747954|gb|AGS43072.1| ; Align 1946252 241 117 ; Align 1946135 281 87 ; Align 1945968 310 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747954|gb|AGS43072.1| odorant receptor Or4a [Cephus cinctus] Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 0 -> 118 Target range: 1947382 -> 1947025 1 : MetArgThrLeuProValCysPheValIlePheLysPheTrpGlyLeuTrpArgPr : 19 |||!!!..!||| ! ! ! :!!:!:.!!|||.!!! |||! !!::! !|| MetSerValLeuLysSerThrSerLeuLeuLeuLysIleSerGlyCysTyrLeuPr 1947382 : ATGAGCGTACTGAAGTCTACGTCACTTTTGCTCAAAATTTCCGGCTGTTATCTGCC : 1947328 20 : oSerAspTyrLeuSer<->TrpMetLysIleLeuTyrAsnIleTyrSerLeuLeuI : 37 | !...!:: !!!! !:: !:! !|||||||||||||||.!!:::... oHisSerTrpThrThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheS 1947327 : CCATTCGTGGACAACACCGTTCGAAAGGTCTTTGTACAATATCTACGGGGtgttct : 1947271 38 : leValValIleMetTyrSerPheMetLeuPheGluPheIleAspValPheIleAsn : 55 ::::::::: !|||.!!:!:|||! :!!.!.:!!|||||| |||||| erPheLeuLeuLeuSerSerLeuValLeuSerGlnIleLeuAspValAlaIleAsn 1947270 : cctttcttcttctaagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCAAC : 1947217 56 : IleLysSerIleAspAspPheThrMetAsnSerPheMetLeuValThrPheThrAs : 74 :!::!!||| |||||||||!:: ||| ::: !!.!..! ! ! ValGluSerGlnAspAspPheSerAspAsnPheSerValThrAlaValValPheLe 1947216 : GTGGAGAGCCAGGATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTTCT : 1947160 75 : nAlaCysTrpArgValAlaLysIleLeuAlaGlyArgGlyLysIleLeuLysValI : 93 !.!!!! !::!:!:!!:!!! :!!||| ! !!||||||!!..!!:!! :!!| uThrTrpPheLysLeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuI 1947159 : CACGTGGTTCAAGCTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGA : 1947103 94 : leAsnLeuLeuThrSerAspTyrCysValAlaValAspLysArgGluValGluIle : 111 ||:!! !||| !!:! ! ! ! ! !!||||||! !..!||| !|||||| leAspThrLeuGlnAsnLysProPheSerProValAspThrGluGluAsnGluIle 1947102 : TCGATACGCTTCAGAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATT : 1947049 112 : LysGluGlyTyrAspGlyIle : 118 !:!! ! !!:!!!: !||| ArgAlaLysPheGluLysIle 1947048 : AGAGCGAAATTCGAGAAGATC : 1947026 vulgar: gi|528747954|gb|AGS43072.1| 0 118 . KQ414661.1 1947382 1947025 - 115 M 24 72 G 0 3 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1947026 1947382 115 - . gene_id 2 ; sequence gi|528747954|gb|AGS43072.1| ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1947026 1947382 . - . KQ414661.1 exonerate:protein2genome:local exon 1947026 1947382 . - . insertions 3 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1947026 1947382 115 - . alignment_id 2 ; Query gi|528747954|gb|AGS43072.1| ; Align 1947383 1 72 ; Align 1947308 25 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr297PSE Target: KQ414667.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold102, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 544 Query range: 164 -> 388 Target range: 804144 -> 801445 165 : LysValLeuProTyrArgGlyTyrPhePheTyrAsnTyrThrGlnProGlyValTyrG : 184 ||||||||||||!:!||||||||||||||| !||| ! ||| ! !! !:!!!:!! LysValLeuProPheArgGlyTyrPhePheLeuAsnGlnThrValSerProIlePheG 804144 : AAAGTGCTCCCATTCCGAGGTTACTTCTTCCTCAATCAAACCGTGTCGCCGATCTTCG : 804087 185 : lyTyrThrTyrLeuAlaAsnSerMetValGlyAlaLeuGlyCysMetSerIleAlaTy : 203 !! ! !|||||| !||| !! !.!|||!.!!!!||| !!! !! !|||||| luCysLeuTyrLeuPheAsnValThrAlaGlyGlyPheGlyGlyThrMetIleAlaSe 804086 : AGTGCTTGTACCTGTTCAACGTGACCGCTGGTGGATTCGGCGGTACGATGATCGCCAG : 804030 204 : rGlyThrSerPheSerLeuIleSerThrIleHisGlyAlaAlaLysPheAlaIleVal : 222 ! !!|||||||||!:!|||:!: !! !!!:||||||:!!||||||||||||:!!:!! rCysThrSerPheAsnLeuValValIleMetHisGlySerAlaLysPheAlaValLeu 804029 : TTGCACCAGTTTCAATCTGGTGGTAATAATGCACGGCTCGGCCAAGTTTGCTGTTCTA : 803973 223 : LysArgAspPheGluLysIleAspArgThrThrTrpThrAspHisLysIleValGlyL : 242 ::!||| !!.||| :!!..! !!! ! ! !.!..! !! :!!:!!||| ArgArgArgLeuGluAlaLeuSerGlyLysAspProAsnSerThrThrValMetGlyA 803972 : CGGAGAAGATTGGAGGCTCTCAGCGGCAAGGATCCTAATTCTACTACTGTTATGGGGG : 803913 243 : ysCysValArgArgHisGlnGluCysIle{Ar} >>>> Target Intron 1 >> : 252 ! ! |||! !||||||||||||...|||{..} 696 bp spLeuValIleArgHisGlnGluAlaIle{Gl}++ 803912 : ATTTAGTGATTCGCCACCAGGAAGCAATA{GA}gt....................... : 803879 253 : >> {g}PheAlaGluThrValGluAspIleIleAsnIleLeuAlaLeuAlaHisPhe : 269 {!}!:!|||!!:.!!:!!||| |||||||||:!!|||||||||!.!!!.||| ++{u}TyrAlaAspAlaLeuGluArgIleIleAsnValLeuAlaLeuGlyGlnPhe 803878 : ..ag{G}TACGCAGATGCACTGGAAAGGATCATAAATGTTCTGGCTTTGGGACAATTC : 803136 270 : ValIleSerThrGlyLeuMetCysPheGlyGlyPheGlnLeuThrThr >>>> Tar : 286 ||||||||||||||||||!!:||||||!.!|||||||||:!!|||:!! ValIleSerThrGlyLeuIleCysPheAlaGlyPheGlnIleThrSer++ 803135 : GTCATTAGCACAGGTCTGATCTGCTTCGCGGGATTCCAGATCACCTCGgt........ : 803083 287 : get Intron 2 >>>> MetLeuGluAspArgAlaArgLeuThrLysTyrThrSer : 298 61 bp |||:!!||||||!:!!.!||||||! !||||||:!!!!! ++MetMetGluAspLysGlyArgLeuMetLysTyrSerThr 803082 : .................agATGATGGAGGATAAAGGACGGCTGATGAAATATTCCACC : 802988 299 : PheLeuAsnThrAlaValThrGluLeuPheIlePheSerPheSerGlyGlnSerLeuL : 318 |||||||||:!!|||:!! !|||||||||!!:|||||||||||||||.!..!!|||! PheLeuAsnSerAlaIleLeuGluLeuPheMetPheSerPheSerGlyAsnGlyLeuI 802987 : TTCTTGAACTCCGCCATTCTCGAGCTGTTCATGTTCAGCTTCAGCGGAAACGGCCTGA : 802928 319 : ysSerGlu >>>> Target Intron 3 >>>> SerGluAspValAlaGluPhe : 327 !..!||| 1119 bp |||!!:! |||!.!|||! leAspGlu++ ++SerAspAlaValGlyGluSer 802927 : TAGACGAGgt.........................agAGCGACGCGGTAGGCGAGTCA : 801782 328 : AlaTyrThrSerAsnTrpIleGlySerValLeuSerThrAsnLeuArgMetIleIleL : 347 |||||| !|||...|||||||||||| !!!!||| !!:!|||!:!!!:!!:!!:: AlaTyrGlySerGlyTrpIleGlySerArgPheSerGlnSerLeuGlnIleMetMetM 801781 : GCTTATGGCAGCGGATGGATCGGTAGTCGTTTCTCTCAGAGTCTTCAGATCATGATGA : 801722 348 : euArgSerArgLysProCysThrIleThrAlaGlyLysPheTyrAspMetSerLeuGl : 366 !!|||||||||! !||||||! !|||||||||!.!|||||||||..!||||||||||| etArgSerArgIleProCysLysIleThrAlaAlaLysPheTyrSerMetSerLeuGl 801721 : TGCGCTCGAGGATACCATGCAAGATAACCGCCGCTAAATTCTACAGCATGTCCTTGGA : 801665 367 : uSerPheLeuLys >>>> Target Intron 4 >>>> ValMetSerSerSerP : 376 |||||||! !||| 151 bp |||:!:|||!!!|||| uSerPheSerLys++ ++ValLeuSerThrSerP 801664 : GAGCTTCTCGAAGgt.........................agGTACTCAGCACGTCTT : 801484 377 : heSerTyrPheThrValLeuLeuAlaMetArgGluGlu : 388 |||||||||||||||||||| !|||! !:!!!:!!: heSerTyrPheThrValLeuThrAlaThrLysAspAsp 801483 : TCTCCTACTTCACGGTCCTCACAGCCACCAAAGACGAC : 801446 vulgar: NvOr297PSE 164 388 . KQ414667.1 804144 801445 - 544 M 87 261 S 0 2 5 0 2 I 0 692 3 0 2 S 1 1 M 33 99 5 0 2 I 0 57 3 0 2 M 35 105 5 0 2 I 0 1115 3 0 2 M 50 150 5 0 2 I 0 147 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414667.1 exonerate:protein2genome:local gene 801446 804144 544 - . gene_id 1 ; sequence NvOr297PSE ; gene_orientation + KQ414667.1 exonerate:protein2genome:local cds 803882 804144 . - . KQ414667.1 exonerate:protein2genome:local exon 803882 804144 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 803880 803881 . - . intron_id 1 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 803186 803881 . - . intron_id 1 KQ414667.1 exonerate:protein2genome:local splice3 803186 803187 . - . intron_id 0 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 803086 803185 . - . KQ414667.1 exonerate:protein2genome:local exon 803086 803185 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 803084 803085 . - . intron_id 2 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 803025 803085 . - . intron_id 2 KQ414667.1 exonerate:protein2genome:local splice3 803025 803026 . - . intron_id 1 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 802920 803024 . - . KQ414667.1 exonerate:protein2genome:local exon 802920 803024 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 802918 802919 . - . intron_id 3 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801801 802919 . - . intron_id 3 KQ414667.1 exonerate:protein2genome:local splice3 801801 801802 . - . intron_id 2 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801651 801800 . - . KQ414667.1 exonerate:protein2genome:local exon 801651 801800 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 801649 801650 . - . intron_id 4 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801500 801650 . - . intron_id 4 KQ414667.1 exonerate:protein2genome:local splice3 801500 801501 . - . intron_id 3 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801446 801499 . - . KQ414667.1 exonerate:protein2genome:local exon 801446 801499 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local similarity 801446 804144 544 - . alignment_id 1 ; Query NvOr297PSE ; Align 804145 165 261 ; Align 803185 253 99 ; Align 803025 286 105 ; Align 801801 321 150 ; Align 801500 371 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr296 Target: KQ414667.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold102, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 596 Query range: 50 -> 319 Target range: 805205 -> 802919 51 : SerIleTyrLeuMetSerMetGlyValAlaAlaGluValIleValPhePheGlyGluA : 70 ..!:!: :!!||||||!!:!.!|||.!!|||!!:|||||| ! !.!! !!:| GlnValValValMetSerIleAlaValThrAlaAspValIleHisAsnIle---AspA 805205 : CAGGTGGTGGTGATGTCGATCGCGGTGACGGCCGACGTGATCCACAATATC---GACG : 805151 71 : spMetAsnGluThrIleGluCysAlaLeuIleSerSerAlaPhePheMetAlaLeuTh : 89 ||:!!:!!|||.!!! !|||||||||||||||!!!!!!||||||!:!:!:..!:!!.. spLeuAspGluAlaThrGluCysAlaLeuIleCysThrAlaPheTyrLeuCysValVa 805150 : ATTTGGACGAAGCGACCGAGTGTGCGTTGATTTGCACAGCATTTTACCTTTGCGTTGT : 805094 90 : rArgIleIleThrPheAlaSerHisGlnProGluMetLeuTyrValValGluThrMet : 108 !|||!!::!:..!!:!|||! !|||||| !!!:|||||||||||||||.!.|||||| lArgMetValValTyrAlaIleHisGlnLysAspMetLeuTyrValValAsnThrMet 805093 : TCGCATGGTGGTGTACGCGATTCATCAGAAAGATATGCTTTACGTAGTGAACACAATG : 805037 109 : ArgGluAspTrpIleArgSerThrAspGluGluArgAlaIleLeuArgAspLysCysL : 128 ||| ||||||! !..!|||:!! ! |||!!:|||!.!|||||| !!!:||| : ArgIleAspTrpThrGluSerSerLysGluAspArgValIleLeuAlaGluLysThrM 805036 : AGGATCGATTGGACTGAATCTTCAAAAGAGGATCGTGTTATTCTAGCGGAGAAAACGA : 804977 129 : euPheAlaPheLysLeuAlaLysPhePheAlaIleSerValThrIleThrCysSerAl : 147 !!|||||||||:::|||||||||!:!||| !! !!!!|||.!! !||| ! ! etPheAlaPheArgLeuAlaLysTyrPheIleSerThrValAlaAlaThrIleValMe 804976 : TGTTCGCCTTTCGTCTTGCCAAGTACTTTATCAGTACCGTGGCTGCAACTATCGTGAT : 804920 148 : aPheIleLeuMetProMetLeuGlu >>>> Target Intron 1 >>>> LeuL : 157 !|||!!:! !!!:|||!!:|||||| 728 bp :!! tPheMetCysIleProIleLeuGlu++ ++Ile- 804919 : GTTCATGTGCATTCCGATTCTAGAGgt.........................agATT- : 804162 158 : ysPheValGluAsnAlaLysArgMetLeuProTyrArgGlyTyrPhePhePheAsnHi : 176 !:!||| ..! ! ! !:!:!!||||||!:!|||||||||||||||.!!|||!! --TyrValLeuGlyLysAspLysValLeuProPheArgGlyTyrPhePheLeuAsnGl 804161 : --TACGTGCTTGGTAAGGACAAAGTGCTCCCATTCCGAGGTTACTTCTTCCTCAATCA : 804108 177 : sThrValProGlyValTyrGluTyrValTyrLeuValAsnSerMetLeuGlyValLeu : 195 .|||||| !! !:!!!:!|||! !:!!|||||| !!||| !! !|||! !!!! nThrValSerProIlePheGluCysLeuTyrLeuPheAsnValThrAlaGlyGlyPhe 804107 : AACCGTGTCGCCGATCTTCGAGTGCTTGTACCTGTTCAACGTGACCGCTGGTGGATTC : 804051 196 : GlyCysSerThrIleAlaCysAlaThrSerPheSerLeuIleThrSerIleHisGlyA : 215 ||| !!!!!! !|||||| !!..!|||||||||!:!|||:!:..!! !!!:||||||: GlyGlyThrMetIleAlaSerCysThrSerPheAsnLeuValValIleMetHisGlyS 804050 : GGCGGTACGATGATCGCCAGTTGCACCAGTTTCAATCTGGTGGTAATAATGCACGGCT : 803991 216 : laAlaLysPheAlaIleValGlnLysAspPheGluArgIleAspGlnValThrTrpAs : 234 !!||||||||||||:!!:!!!:!!:! !!.||| !:!!..! ! ! || erAlaLysPheAlaValLeuArgArgArgLeuGluAlaLeuSerGlyLysAspProAs 803990 : CGGCCAAGTTTGCTGTTCTACGGAGAAGATTGGAGGCTCTCAGCGGCAAGGATCCTAA : 803934 235 : nAsnSerGluIleValGlyArgCysValArgArgHisGlnGluCysIle{Ar} >>> : 251 |::!!!! :!!:!!||| !! |||! !||||||||||||...|||{..} nSerThrThrValMetGlyAspLeuValIleArgHisGlnGluAlaIle{Gl}++ 803933 : TTCTACTACTGTTATGGGGGATTTAGTGATTCGCCACCAGGAAGCAATA{GA}gt... : 803879 252 : > Target Intron 2 >>>> {g}PheAlaGluThrValGluAsnIleIleAsnV : 262 696 bp {!}!:!|||!!:.!!:!!|||!..|||||||||| ++{u}TyrAlaAspAlaLeuGluArgIleIleAsnV 803878 : ......................ag{G}TACGCAGATGCACTGGAAAGGATCATAAATG : 803154 263 : alLeuAlaLeuAlaGlnPheValIleSerThrGlyLeuIleCysPheAlaGlyPheGl : 281 |||||||||||!.!|||||||||||||||||||||||||||||||||||||||||||| alLeuAlaLeuGlyGlnPheValIleSerThrGlyLeuIleCysPheAlaGlyPheGl 803153 : TTCTGGCTTTGGGACAATTCGTCATTAGCACAGGTCTGATCTGCTTCGCGGGATTCCA : 803097 282 : nMetThrThr >>>> Target Intron 3 >>>> MetLeuThrAspArgAlaA : 291 |!!:|||:!! 61 bp |||:!! !|||!:!!.!| nIleThrSer++ ++MetMetGluAspLysGlyA 803096 : GATCACCTCGgt.........................agATGATGGAGGATAAAGGAC : 803006 292 : rgPheThrLysTyrAlaSerPheLeuAsnAlaAlaValThrGluLeuPheIlePheSe : 310 ||.!.! !||||||:!!!!!|||||||||:!!|||:!! !|||||||||!!:||||| rgLeuMetLysTyrSerThrPheLeuAsnSerAlaIleLeuGluLeuPheMetPheSe 803005 : GGCTGATGAAATATTCCACCTTCTTGAACTCCGCCATTCTCGAGCTGTTCATGTTCAG : 802949 311 : rTyrGlyGlyGlnSerLeuLysSerGlu : 319 |!:!.!!|||.!..!!|||! !..!||| rPheSerGlyAsnGlyLeuIleAspGlu 802948 : CTTCAGCGGAAACGGCCTGATAGACGAG : 802920 vulgar: NvOr296 50 319 . KQ414667.1 805205 802919 - 596 M 17 51 G 1 0 M 87 261 5 0 2 I 0 724 3 0 2 M 1 3 G 1 0 M 93 279 S 0 2 5 0 2 I 0 692 3 0 2 S 1 1 M 33 99 5 0 2 I 0 57 3 0 2 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414667.1 exonerate:protein2genome:local gene 802920 805205 596 - . gene_id 1 ; sequence NvOr296 ; gene_orientation + KQ414667.1 exonerate:protein2genome:local cds 804894 805205 . - . KQ414667.1 exonerate:protein2genome:local exon 804894 805205 . - . insertions 0 ; deletions 1 KQ414667.1 exonerate:protein2genome:local splice5 804892 804893 . - . intron_id 1 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 804166 804893 . - . intron_id 1 KQ414667.1 exonerate:protein2genome:local splice3 804166 804167 . - . intron_id 0 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 803882 804165 . - . KQ414667.1 exonerate:protein2genome:local exon 803882 804165 . - . insertions 0 ; deletions 1 KQ414667.1 exonerate:protein2genome:local splice5 803880 803881 . - . intron_id 2 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 803186 803881 . - . intron_id 2 KQ414667.1 exonerate:protein2genome:local splice3 803186 803187 . - . intron_id 1 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 803086 803185 . - . KQ414667.1 exonerate:protein2genome:local exon 803086 803185 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 803084 803085 . - . intron_id 3 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 803025 803085 . - . intron_id 3 KQ414667.1 exonerate:protein2genome:local splice3 803025 803026 . - . intron_id 2 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 802920 803024 . - . KQ414667.1 exonerate:protein2genome:local exon 802920 803024 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local similarity 802920 805205 596 - . alignment_id 1 ; Query NvOr296 ; Align 805206 51 51 ; Align 805155 69 261 ; Align 804166 156 3 ; Align 804163 158 279 ; Align 803185 252 99 ; Align 803025 285 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr298 Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 335 -> 399 Target range: 1387619 -> 1387946 336 : GlyGluLysValGlyAlaSerAlaTyrAspIleSerTrpTyrAspPheHisProGl : 354 ...|||::::!! ! !|||...|||:::... |||||||||.!. ! |||.. SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 355 : uAlaValArgGlnLeuMetPheCysIleLeuArgAlaAsnLysProLeuAsnValT : 373 !! !!.!||| ::::::... |||||||||:!!.!.||| !|||! :!!| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 374 : hrAlaGlyLysPhePheSerLeuAsnArgAsnSerTyrLysAsn >>>> Targe : 388 |||||||||||||| ! !:!|||::! ! !:!!!:! ||| hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsn++ 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgt.......... : 1387778 389 : t Intron 1 >>>> ValIleMetThrSerSerSerTyrAlaSerValLeu : 399 135 bp ::::!!! .!!|||:!!||||||!.!||||||||| ++MetLeuLysAlaSerAlaSerTyrValSerValLeu 1387779 : ...............agatgCTAAAAGCTTCAGCCTCGTACGTATCTGTTTTG : 1387946 vulgar: NvOr298 335 399 . KQ414716.1 1387619 1387946 + 120 M 52 156 5 0 2 I 0 131 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387946 120 + . gene_id 1 ; sequence NvOr298 ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1387620 1387775 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387775 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1387776 1387777 . + . intron_id 1 ; splice_site "gt" KQ414716.1 exonerate:protein2genome:local intron 1387776 1387910 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1387909 1387910 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1387911 1387946 . + . KQ414716.1 exonerate:protein2genome:local exon 1387911 1387946 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387946 120 + . alignment_id 1 ; Query NvOr298 ; Align 1387620 336 156 ; Align 1387911 388 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747958|gb|AGS43074.1| odorant receptor Orco [Cephus cinctus] Target: KQ414731.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold204, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1297 Query range: 0 -> 359 Target range: 591043 -> 587873 1 : MetMetLysPheLysGlnGlnGlyLeuValAlaAspLeuMetProAsnIleArgHisM : 20 |||||||||||||||||||||||||||||||||||||||||||||||||||!:!! | MetMetLysPheLysGlnGlnGlyLeuValAlaAspLeuMetProAsnIleLysLeuM 591043 : ATGATGAAGTTCAAGCAACAGGGGCTAGTCGCGGACTTAATGCCCAACATAAAGCTGA : 590986 21 : etGlnPheSerGlyHisPheMetPheAsnTyrTyrAsnAspThrGlyGlySerThrLy : 39 ||:!! !||||||||||||:!!||||||||||||!.!||| ..!:!!||||| etLysAlaSerGlyHisPheLeuPheAsnTyrTyrThrAsp------AsnAlaThrLy 590985 : TGAAAGCCAGTGGGCATTTTTTGTTCAACTATTACACTGAC------AATGCTACGAA : 590935 40 : sLeuPheHisThrIleTyrCysSer >>>> Target Intron 1 >>>> IleH : 49 | !.!.|||! !|||||||||! ! 419 bp :!:| sGlyMetHisLysIleTyrCysIle++ ++ValH 590934 : GGGTATGCACAAAATCTACTGCATCgt.........................agGTGC : 590486 50 : isLeuPheLeuIleLeuLeuGlnPheGlyLeuCysCysValAsnLeuThrLeuGluAr : 68 ||||| ! |||||||||:!!|||||||||!!!||| !!:!!||||||! !||||||!! isLeuValLeuIleLeuIleGlnPheGlyPheCysGlyIleAsnLeuMetLeuGluSe 590485 : ATCTAGTACTGATCCTAATACAGTTCGGATTCTGCGGTATAAACCTAATGTTGGAGAG : 590429 69 : gAlaAspValAspAspLeuThrAlaAsnThrIleThrValLeuPhePheAlaHisSer : 87 !! !|||||||||!!:|||||||||||||||||||||:!!|||||||||.!!|||||| rAspAspValAspGluLeuThrAlaAsnThrIleThrMetLeuPhePheThrHisSer 590428 : CGACGACGTTGACGAACTGACGGCGAACACGATCACGATGCTGTTCTTCACGCACAGC : 590372 88 : IleIleLysLeuAlaTyrPheAlaValArgSerLysLeuPheTyrArgThrLeuGlyI : 107 :!::!!||||||!.!||||||||||||||||||||||||||||||||||||!!!|||| ValValLysLeuGlyTyrPheAlaValArgSerLysLeuPheTyrArgThrPheGlyI 590371 : GTGGTTAAGCTCGGTTATTTCGCCGTCAGGAGCAAGTTGTTCTACAGAACCTTCGGTA : 590312 108 : leTrpAsnAsnProAsnSerHisProLeuPheAlaGluSerAsnAlaArgTyrHisAl : 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| leTrpAsnAsnProAsnSerHisProLeuPheAlaGluSerAsnAlaArgTyrHisGl 590311 : TTTGGAATAATCCGAACAGCCATCCTCTGTTCGCCGAGAGTAACGCGCGTTATCATCA : 590255 127 : aIleAlaLeuThrLysMetArgArgLeuLeuAlaAlaValGlyAlaAlaThrIleLeu : 145 !||||||::: ||||||||| |||||| !|||||| !!.!.!!!:!:!:||| nIleAlaValLysLysMetArgIleLeuLeuMetAlaValMetGlyThrSerValLeu 590254 : GATTgctgtgaaaaaaatgagaatacTGTTGATGGCCGTCATGGGAACCAGTGTGCTC : 590198 146 : ThrValCysAlaTrpThrGlyIleThrPheValGlyAspSerValLysLysValThrA : 165 |||||| !:!!|||||| !|||||||||:!!|||||||||||||||||||||..!| ThrValIleSerTrpThrThrIleThrPheIleGlyAspSerValLysLysValValA 590197 : ACCGTCATTTCTTGGACCACAATCACGTTCATCGGTGATTCCGTGAAGAAGGTCGTCG : 590138 166 : spProValThrAsnGluThrMetThrValGlu >>>> Target Intron 2 >>> : 176 |||||||||||||||||||| !|||||| 672 bp spProValThrAsnGluThrSerPheValGlu++ 590137 : ATCCTGTTACCAACGAAACCTCTTTTGTCGAggt........................ : 590103 177 : > IleProArgLeuMetLeuArgSerTrpTyrProTyrAspAlaSerHisGlyMetA : 194 :!!||||||||||||:!!||||||||||||||||||||| !!||||||||||||| ++ValProArgLeuMetValArgSerTrpTyrProTyrAspProSerHisGlyMetA 590102 : .agGTACCAAGATTGATGGTGCGTTCTTGGTATCCGTACGACCCCAGCCACGGGATGG : 589379 195 : laHisValLeuThrLeuIleTyrGlnPheTyrPheLeuLeuIleThrThrMetAspAl : 213 |||||:!!|||||||||:!!!:!|||.!!|||!::|||:!!.!!|||! ! ||||| laHisIleLeuThrLeuValPheGlnLeuTyrTrpLeuIlePheThrIleAlaAspAl 589378 : CTCACATTCTTACGTTAGTATTCCAACTTTACTGGCTGATATTTACCATAGCAGACGC : 589322 214 : aAsnSerLeuAspValLeuPheCysSerTrpLeuLeuPheAlaCysGluGlnLeuGln : 232 |||| !|||||||||||||||||||||||||||||||||||||||||||||:!!||| aAsnLeuLeuAspValLeuPheCysSerTrpLeuLeuPheAlaCysGluGlnIleGln 589321 : GAATCTCCTAGACGTGCTGTTCTGTTCGTGGCTCCTCTTCGCTTGTGAACAAATTCAG : 589265 233 : HisLeuLysGlnIleMetLysProLeuMetGluLeuSerAlaThrLeuAspThrValV : 252 |||||||||.!.|||||||||||||||||||||!!!|||||||||||||||||||||| HisLeuLysAsnIleMetLysProLeuMetGluPheSerAlaThrLeuAspThrValV 589264 : CATCTAAAGAATATCATGAAACCACTGATGGAATTCAGCGCGACCCTGGACACTGTTG : 589205 253 : alProHisThrAsnGluLeuPheLys >>>> Target Intron 3 >>>> Ala : 261 |||||:!!!:!...|||||||||||| 1002 bp ||| alProAsnSerGlyGluLeuPheLys++ ++Ala 589204 : TACCAAACAGTGGAGAATTGTTTAAAgt.........................agGCC : 588176 262 : GlySerThr<->AspHisLeuArgAspThrGlnGlyThrGlnProMetAlaPro<->P : 279 |||:!!!.! |||||| !!:!||| !.!. ! !!! !||| .!!||| | GlyAlaAsnMetAspHisGlyLysAspGlnAspLeuProProProAlaThrProHisP 588175 : GGTGCGAACATGGATCACGGGAAGGATCAAGATCTACCACCGCCAGCCACGCCACATC : 588116 280 : roProAsnGluAsnMetLeuAspMetAspLeuArgGlyIleTyrSerAsnArgGlnAs : 298 ||! !!.!!!:|||||||||||||||||||||||||||||||||||||||||| !|| roGlnThrAspAsnMetLeuAspMetAspLeuArgGlyIleTyrSerAsnArgThrAs 588115 : CTCAAACCGATAATATGCTGGACATGGATCTTCGAGGAATATACAGCAACAGGACAGA : 588059 299 : pPheThrAlaThrPheArgThrAlaAlaGlyMetAsnPheAsnGlyGlyValGlyPro : 317 |!:!|||.!!|||||||||.!!.!!|||||| !!.!||||||||||||||||||||| pTyrThrThrThrPheArgAlaThrAlaGlyAlaThrPheAsnGlyGlyValGlyPro 588058 : TTACACGACTACCTTCCGGGCAACTGCTGGCGCGACCTTTAACGGCGGTGTAGGACCA : 588002 318 : AsnGlyLeuThrLysLysGlnGluMetLeuValArgSerAlaIleLysTyrTrpValG : 337 ||||||||||||:!!||||||||||||||||||||||||||||||||||||||||||| AsnGlyLeuThrGlnLysGlnGluMetLeuValArgSerAlaIleLysTyrTrpValG 588001 : AATGGATTGACACAGAAACAGGAGATGTTGGTCAGAAGTGCCATCAAATATTGGGTAG : 587942 338 : luArgHisLysHisIleValArgLeuValThrAlaIleGlyAspAlaTyrGlyValAl : 356 |||||||||||||||||||||||! !||| !!.!.!! !|||...::: luArgHisLysHisIleValArg***ValHisValPhePheAspValPheThrPheLe 587941 : AGAGGCACAAACACATTGTCAGGTAAGTACATGTTTTCTTCGAtgttttcacatttct : 587885 357 : aLeuLeuPhe : 359 !|||||| uGlnLeuPhe 587884 : tcAACTCTTT : 587874 vulgar: gi|528747958|gb|AGS43074.1| 0 359 . KQ414731.1 591043 587873 - 1297 M 33 99 G 2 0 M 12 36 5 0 2 I 0 415 3 0 2 M 128 384 5 0 2 I 0 668 3 0 2 M 85 255 5 0 2 I 0 998 3 0 2 M 4 12 G 0 3 M 14 42 G 0 3 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414731.1 exonerate:protein2genome:local gene 587874 591043 1297 - . gene_id 1 ; sequence gi|528747958|gb|AGS43074.1| ; gene_orientation + KQ414731.1 exonerate:protein2genome:local cds 590909 591043 . - . KQ414731.1 exonerate:protein2genome:local exon 590909 591043 . - . insertions 0 ; deletions 2 KQ414731.1 exonerate:protein2genome:local splice5 590907 590908 . - . intron_id 1 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 590490 590908 . - . intron_id 1 KQ414731.1 exonerate:protein2genome:local splice3 590490 590491 . - . intron_id 0 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 590106 590489 . - . KQ414731.1 exonerate:protein2genome:local exon 590106 590489 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 590104 590105 . - . intron_id 2 ; splice_site "gt" KQ414731.1 exonerate:protein2genome:local intron 589434 590105 . - . intron_id 2 KQ414731.1 exonerate:protein2genome:local splice3 589434 589435 . - . intron_id 1 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 589179 589433 . - . KQ414731.1 exonerate:protein2genome:local exon 589179 589433 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 589177 589178 . - . intron_id 3 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 588177 589178 . - . intron_id 3 KQ414731.1 exonerate:protein2genome:local splice3 588177 588178 . - . intron_id 2 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 587874 588176 . - . KQ414731.1 exonerate:protein2genome:local exon 587874 588176 . - . insertions 6 ; deletions 0 KQ414731.1 exonerate:protein2genome:local similarity 587874 591043 1297 - . alignment_id 1 ; Query gi|528747958|gb|AGS43074.1| ; Align 591044 1 99 ; Align 590945 36 36 ; Align 590490 48 384 ; Align 589434 176 255 ; Align 588177 261 12 ; Align 588162 265 42 ; Align 588117 279 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747958|gb|AGS43074.1| odorant receptor Orco [Cephus cinctus] Target: KQ414731.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold204, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 575 Query range: 343 -> 480 Target range: 582363 -> 580207 344 : ArgLeuValThrAlaIleGlyAspAlaTyrGlyValAlaLeuLeuPheHisMetLeuI : 363 ||||||||||||:!!:!!|||||||||||||||||||||||||||.!.||||||||| ArgLeuValThrSerValGlyAspAlaTyrGlyValAlaLeuLeuLeuHisMetLeuA 582363 : agATTGGTCACTTCAGTCGGTGATGCTTACGGTGTTGCTCTACTGCTGCACATGTTAG : 582306 364 : leThrThrValSerLeuThrLeuLeuAlaTyrGlnAlaThrLys >>>> Target : 378 !||||||:!!!!!|||||||||||||||||||||||||||||| 74 laThrThrIleThrLeuThrLeuLeuAlaTyrGlnAlaThrLys++ 582305 : CCACCACCATCACCTTAACTTTGCTTGCTTACCAAGCAACGAAGgt............ : 582259 379 : Intron 1 >>>> ValAsnThrValAspValTyrAlaAlaThrValIleGlyTyrV : 392 2 bp :!!:!! !||||||..!|||||||||:!!||||||||||||: ++IleHisGlyValAspThrTyrAlaAlaSerValIleGlyTyrL 582258 : .............agATACACGGTGTCGATACATACGCAGCATCGGTAATAGGCTACT : 581477 393 : alLeuTyrThrLeuGlyGlnValPheLeuPheCysIlePheGlyAsnArgLeuIleGl : 411 !!||||||:!!|||||||||||||||:!!.!!|||||||||||||||||||||||||| euLeuTyrSerLeuGlyGlnValPheMetLeuCysIlePheGlyAsnArgLeuIleGl 581476 : TGTTGTACTCCCTGGGACAAGTTTTCATGCTCTGCATATTTGGAAACCGTCTCATTGA : 581420 412 : uGlu >>>> Target Intron 2 >>>> SerSerSerValMetGluAlaAlaT : 421 |||| 533 bp ||||||||||||||||||||||||| uGlu++ ++SerSerSerValMetGluAlaAlaT 581419 : AGAGgt.........................agAGCTCATCTGTGATGGAAGCCGCTT : 580857 422 : yrSerCysHisTrpTyrAspGlySerGluGluAlaLysThrPheValGlnIleValCy : 440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| yrSerCysHisTrpTyrAspGlySerGluGluAlaLysThrPheValGlnIleValCy 580856 : ACTCTTGTCACTGGTACGACGGGTCAGAGGAGGCTAAGACTTTCGTACAAATCGTCTG : 580800 441 : sGlnGlnCysGlnLysAlaMetSerIleSerGlyAlaLysPhePheThrValSerLeu : 459 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| sGlnGlnCysGlnLysAlaMetSerIleSerGlyAlaLysPhePheThrValSerLeu 580799 : TCAACAGTGTCAAAAAGCGATGTCGATTTCAGGCGCGAAATTCTTCACCGTCTCTTTG : 580743 460 : AspLeuPheAlaSer >>>> Target Intron 3 >>>> ValLeuGlyAlaVa : 469 ||||||||||||||| 470 bp ||||||||||||:! AspLeuPheAlaSer++ ++ValLeuGlyAlaMe 580742 : GATCTTTTCGCTTCGgt.........................agGTGCTGGGAGCTAT : 580243 470 : lValThrTyrPheMetValLeuValGlnLeuLys : 480 !||||||||||||||||||||||||||||||||| tValThrTyrPheMetValLeuValGlnLeuLys 580242 : GGTCACATACTTCATGGTGTTGGTGCAACTGAAG : 580208 vulgar: gi|528747958|gb|AGS43074.1| 343 480 . KQ414731.1 582363 580207 - 575 M 34 102 5 0 2 I 0 738 3 0 2 M 35 105 5 0 2 I 0 529 3 0 2 M 52 156 5 0 2 I 0 466 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414731.1 exonerate:protein2genome:local gene 580208 582363 575 - . gene_id 2 ; sequence gi|528747958|gb|AGS43074.1| ; gene_orientation + KQ414731.1 exonerate:protein2genome:local cds 582262 582363 . - . KQ414731.1 exonerate:protein2genome:local exon 582262 582363 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 582260 582261 . - . intron_id 1 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 581520 582261 . - . intron_id 1 KQ414731.1 exonerate:protein2genome:local splice3 581520 581521 . - . intron_id 0 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 581415 581519 . - . KQ414731.1 exonerate:protein2genome:local exon 581415 581519 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 581413 581414 . - . intron_id 2 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 580882 581414 . - . intron_id 2 KQ414731.1 exonerate:protein2genome:local splice3 580882 580883 . - . intron_id 1 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 580726 580881 . - . KQ414731.1 exonerate:protein2genome:local exon 580726 580881 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 580724 580725 . - . intron_id 3 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 580256 580725 . - . intron_id 3 KQ414731.1 exonerate:protein2genome:local splice3 580256 580257 . - . intron_id 2 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 580208 580255 . - . KQ414731.1 exonerate:protein2genome:local exon 580208 580255 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local similarity 580208 582363 575 - . alignment_id 2 ; Query gi|528747958|gb|AGS43074.1| ; Align 582364 344 102 ; Align 581520 378 105 ; Align 580882 413 156 ; Align 580256 465 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr301FIX Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 336 -> 413 Target range: 41437 -> 41112 337 : IleCysTyrAlaAlaGlnMetThrLeuAsnSerSerGluIleValPheAsnAspThrTyr : 356 ...||||||.!!:!!:!!! .!! !!!. !! ! :!::!!.!!! ! !! !||| PheCysTyrThrSerLysThrAlaLysLysValTyrPheLeuLeuLeuIleArgArgTyr 41437 : ttcTGTTATACTTCAAAAACTGCGAAAAAGGTATATTTTTTGCTGCTCATTCGCAGGTAC : 41380 357 : CysGlyTyrTrpTyrAsnIleSerProAsnAlaArgLysTyrThrGlnMetValMetVal : 376 !!.! |||||||||! !!!!|||!...!!!:!! ! !..!:!:!.!:!! ! AspAlaValTrpTyrAsnSerThrProArgThrGlnThrLeuTyrMetLeuAlaLeuArg 41379 : GATGCAGTATGGTACAACAGTACGCCAAGAACGCAAACTTTGTACATGCTAGCTTTGAGG : 41320 377 : ArgSerMetLysProCysIleIleThrAlaGlyGlyLeuIleAsnMetAsnLeuGlnSer : 396 |||!!!:!:! ||| :!::!!||||||||||||||||||::::::||||||:::::: ArgThrLeuThrProProLeuLeuThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThr 41319 : AGGACTTTAACTCCACCACTGCTCACTGCAGGAGGACtgatttcgttgaatttggaaact : 41260 397 : PhePheAla >>>> Target Intron 1 >>>> IleLeuLysThrSerValSerT : 407 ||| ! 94 bp |||||||||||||||||||||! PheSerLys++ ++IleLeuLysThrSerValSerT 41259 : ttttcGAAGgt.........................agATATTAAAAACTTCTGTTTCCT : 41133 408 : yrAlaThrValMetLeuSer : 413 :: !||||||!!: !||| rpPheThrValIleLysSer 41132 : GGTTCACGGTAATAAAATCG : 41113 vulgar: NvOr301FIX 336 413 . KQ414772.1 41437 41112 - 118 M 63 189 5 0 2 I 0 90 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 41113 41437 118 - . gene_id 1 ; sequence NvOr301FIX ; gene_orientation + KQ414772.1 exonerate:protein2genome:local cds 41249 41437 . - . KQ414772.1 exonerate:protein2genome:local exon 41249 41437 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local splice5 41247 41248 . - . intron_id 1 ; splice_site "GT" KQ414772.1 exonerate:protein2genome:local intron 41155 41248 . - . intron_id 1 KQ414772.1 exonerate:protein2genome:local splice3 41155 41156 . - . intron_id 0 ; splice_site "AG" KQ414772.1 exonerate:protein2genome:local cds 41113 41154 . - . KQ414772.1 exonerate:protein2genome:local exon 41113 41154 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 41113 41437 118 - . alignment_id 1 ; Query NvOr301FIX ; Align 41438 337 189 ; Align 41155 400 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr301FIX Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 153 -> 235 Target range: 20565 -> 20325 154 : CysThrIlePheAlaSerThrProTyrLeuProLeuPheLeuAspLeuValIleProLeu : 173 ....!!|||||| !!!!..!|||!:! !|||:!!.!!||||||:!! ! |||||| AlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAspIleTyrAlaProLeu 20565 : GCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTG : 20508 174 : AsnValSerArgAspLysIleTyrProTyrTyrAlaAspTyrValIleValAspSerGlu : 193 ||| !!!!||| ! ::::!:!:! !||| ||| ||| ! :!!||| !!||| AsnLysThrArgLysArgValPheValTyrProAla---TyrTyrTrpMetAspProGlu 20507 : AACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCC---TATTACTGGATGGATCCTGAG : 20451 194 : LysTyrPheTyrThrLeuTyrThrLeuHisGlyIlePheIleIleIleLeuValThrMet : 213 :!!||| |||! !:!! ! !:!!||| !!!:|||:!::!:|||:!!||| !:!: GlnTyr---TyrMetIleMetIleIleHisIleMetPheValValIleMetValCysVal 20450 : CAATAC---TACATGATAATGATAATACACATAATGTTCGTGGTGATCATGGTCTGTGTC : 20394 214 : SerAlaIleSerIleAspCysLeuPheIleMetMetValLysHisSerValGlyLeuPhe : 233 ! ! ! !:!! !||| !!:!:!: |||:!!|||:!! !||||||!!. IlePheCysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeu 20393 : ATATTCTGTGCTTGCGACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGCTTATTG : 20334 234 : GlnIle : 235 :!! AlaVal 20333 : GCTGTC : 20326 vulgar: NvOr301FIX 153 235 . KQ414772.1 20565 20325 - 117 M 32 96 G 1 0 M 9 27 G 1 0 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20565 117 - . gene_id 2 ; sequence NvOr301FIX ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20565 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20565 . - . insertions 0 ; deletions 2 KQ414772.1 exonerate:protein2genome:local similarity 20326 20565 117 - . alignment_id 2 ; Query NvOr301FIX ; Align 20566 154 96 ; Align 20470 187 27 ; Align 20443 197 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr301FIX Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 350 -> 403 Target range: 35624 -> 35465 351 : ValPheAsnAspThrTyrCysGlyTyrTrpTyrAsnIleSerProAsnAlaArgLysTyr : 370 :!!||| ! !! !||| !!!.! ! |||||||||! !||||||!...!!!:!! LeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGlnThrLeu 35624 : TTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAAACTCTG : 35567 371 : ThrGlnMetValMetValArgSerMetLysProCysIleIleThrAlaGlyGlyLeuIle : 390 ! !:!:!.!:!! !||||||:!!! ||| :!::!!|||||||||||||||||| TyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGlyLeuIle 35566 : TACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGATT : 35507 391 : AsnMetAsnLeuGlnSerPhePheAlaIleLeuLysThr : 403 ::!:!!||||||:!!!!!||| !! !:!! !! !||| SerLeuAsnLeuGluThrPheAlaGluValAsnMetThr 35506 : TCCTTGAATTTGGAGACTTTTGCCGAGGTAAATATGACA : 35466 vulgar: NvOr301FIX 350 403 . KQ414772.1 35624 35465 - 104 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 35466 35624 104 - . gene_id 3 ; sequence NvOr301FIX ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 35466 35624 . - . KQ414772.1 exonerate:protein2genome:local exon 35466 35624 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 35466 35624 104 - . alignment_id 3 ; Query NvOr301FIX ; Align 35625 351 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr301FIX Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 350 -> 397 Target range: 37058 -> 36917 351 : ValPheAsnAspThrTyrCysGlyTyrTrpTyrAsnIleSerProAsnAlaArgLysTyr : 370 :!!||| ! !! !||| !!!.! ! |||||||||! !||||||!...!!!:!! LeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGlnThrLeu 37058 : TTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAAACTCTG : 37001 371 : ThrGlnMetValMetValArgSerMetLysProCysIleIleThrAlaGlyGlyLeuIle : 390 ! !:!:!.!:!! !||||||:!!! ||| :!::!!|||||||||||||||||| TyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGlyLeuIle 37000 : TACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGATT : 36941 391 : AsnMetAsnLeuGlnSerPhe : 397 ::!:!!||||||:!!!!!||| SerLeuAsnLeuGluThrPhe 36940 : TCCTTGAATTTGGAGACTTTT : 36918 vulgar: NvOr301FIX 350 397 . KQ414772.1 37058 36917 - 103 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 36918 37058 103 - . gene_id 4 ; sequence NvOr301FIX ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 36918 37058 . - . KQ414772.1 exonerate:protein2genome:local exon 36918 37058 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 36918 37058 103 - . alignment_id 4 ; Query NvOr301FIX ; Align 37059 351 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr300 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 327 -> 380 Target range: 1345564 -> 1345723 328 : SerSerGlnValGlyPheGluAlaTyrAsnLeuArgTrpTyrAspTrpIleGluAs : 346 ||||||:!!:!! ! ! ..!||| ! !!.!|||||||||! !!!: ! SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 347 : pAspLysSerLeuValThrPheLeuIleThrArgSerGlnLysProMetLeuIleT : 365 !!! ! !!! !:!!! !|||! !|||.!!||||||||||||||| !! !:!!| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 366 : hrAlaGlyArgPheThrSerIleSerLeuGluThrPheSerAlaVal : 380 ||||||||!:!||| ! !.!!|||||||||||||||.!! !||| hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIleVal 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCGTG : 1345723 vulgar: NvOr300 327 380 . KQ414782.1 1345564 1345723 + 101 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345723 101 + . gene_id 1 ; sequence NvOr300 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345723 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345723 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345723 101 + . alignment_id 1 ; Query NvOr300 ; Align 1345565 328 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr298 Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 341 -> 394 Target range: 1345582 -> 1345741 342 : SerAlaTyrAspIleSerTrpTyrAspPheHisProGluAlaValArgGlnLeuMe : 360 :!!..!||| !! !!:!|||||||||!!.! !:!! !..!|||..!|||!! AlaCysTyrPheSerAsnTrpTyrAspLeuProAspLysTyrThrArgSerLeuIl 1345583 : GCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAAATACACGCGATCGTTAAT : 1345637 361 : tPheCysIleLeuArgAlaAsnLysProLeuAsnValThrAlaGlyLysPhePheS : 379 :||||||||| !|||:!!.!.||||||! ! !!:!!|||||||||||||||!:! ePheCysIleAlaArgSerGlnLysProSerTyrLeuThrAlaGlyLysPheTyrV 1345638 : ATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAGCTGGCAAGTTCTACG : 1345694 380 : erLeuAsnArgAsnSerTyrLysAsnValIleMetThrSerSerSer : 394 !!!!::: !.!.!!!!:! ! !|||! !:!::!!! !!:!||| alPheSerLeuGluThrPheGlyIleValSerLeuSerPheAsnSer 1345695 : TGTTCTCGTTAGAAACATTCGGCATCGTGAGTTTATCTTTTAATagt : 1345741 vulgar: NvOr298 341 394 . KQ414782.1 1345582 1345741 + 100 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345583 1345741 100 + . gene_id 1 ; sequence NvOr298 ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345583 1345741 . + . KQ414782.1 exonerate:protein2genome:local exon 1345583 1345741 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345583 1345741 100 + . alignment_id 1 ; Query NvOr298 ; Align 1345583 342 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747952|gb|AGS43071.1| odorant receptor Or3l [Cephus cinctus] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 201 Query range: 167 -> 245 Target range: 1345349 -> 1345723 168 : PheAlaLeuTyrAlaSerSerMetIleLeuLeuLeuTyrGlyTyrCysPheValGl : 186 ||| !:!!|||:!!!!!:!!:!:||||||||| !!:! !!|||||||||:!!|| PheIleIleTyrSerCysAlaValIleLeuLeuAlaPheCysTyrCysPheLeuGl 1345350 : TTTATAATTTATTCCTGCGCCGTTATATTACTAGCATTCTGCTATTGTTTCTTGGG : 1345404 187 : yGluCysLeuIleHisGlu >>>> Target Intron 1 >>>> SerThrLy : 195 |||||||||||||:!!||| 140 bp |||:!!:! yGluCysLeuIleAsnGlu++ ++SerSerGl 1345405 : AGAGTGCCTGATTAACGAGgt.........................agAGTTCTGA : 1345571 196 : sIleHisGluAlaCysAlaGlnCysThrTrpTyrSerMetProLeuIleTyrGlnL : 214 !!!:!!.:!!|||||| ! !!!.!||||||..!:!:||| !! !||| !: uMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLysTyrThrA 1345572 : AATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAAATACACGC : 1345628 215 : ysAlaLeuIleMetCysMetLeuCysAlaGlnArgProLeuGlnLeuThrAlaAla : 232 :!:!!||||||.!.|||!!: ! !!:!!|||!:!|||! ! ! |||||||||!.! rgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuThrAlaGly 1345629 : GATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAGCTGGC : 1345682 233 : LysPheTyrValPheSerLeuAspSerPheSerAsnVal : 245 |||||||||||||||||||||!!:!!!|||.!!! !||| LysPheTyrValPheSerLeuGluThrPheGlyIleVal 1345683 : AAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCGTG : 1345723 vulgar: gi|528747952|gb|AGS43071.1| 167 245 . KQ414782.1 1345349 1345723 + 201 M 25 75 5 0 2 I 0 136 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345350 1345723 201 + . gene_id 1 ; sequence gi|528747952|gb|AGS43071.1| ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345350 1345424 . + . KQ414782.1 exonerate:protein2genome:local exon 1345350 1345424 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345425 1345426 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345425 1345564 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345563 1345564 . + . intron_id 0 ; splice_site "AG" KQ414782.1 exonerate:protein2genome:local cds 1345565 1345723 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345723 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345350 1345723 201 + . alignment_id 1 ; Query gi|528747952|gb|AGS43071.1| ; Align 1345350 168 75 ; Align 1345565 193 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr301FIX Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 348 -> 414 Target range: 12667 -> 12391 349 : GluIleValPheAsnAspThrTyrCysGlyTyrTrpTyrAsnIleSerProAsnAlaArg : 368 :!!|||||| ! !..!! !||| !!.!! |||||||||! !..! !!...!!!:! LysIleValHisPheSerArgTyrAsnAlaLeuTrpTyrAsnSerAspLysArgThrGln 12667 : aAAATTGTCCATTTTTCTAGATACAACGCTTTGTGGTATAACAGCGACAAGAGAACGCAA : 12610 369 : LysTyrThrGlnMetValMetValArgSerMetLysProCysIleIleThrAlaGlyGly : 388 ..!! ! !:!:!.!:!: !!.!!!!:!:... !! ! !||||||||||||||| SerLeuPheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGly 12609 : TCGTTGTTTGTATTAGCATTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGA : 12550 389 : LeuIleAsnMetAsnLeuGlnSerPhePheAla >>>> Target Intron 1 >>>> : 400 ||||||!..||||||||||||||||||! ! ! 78 bp LeuIleThrMetAsnLeuGlnSerPheSerGlu++ 12549 : CTAATTACAATGAACTTGCAAAGTTTCTCAGAGgt......................... : 12512 401 : IleLeuLysThrSerValSerTyrAlaThrValMetLeuSerMet : 414 |||:!!|||||||||||||||||| !! !|||:!! !|||:!: ++IleValLysThrSerValSerTyrTyrMetValLeuLysSerVal 12511 : agATTGTAAAGACGTCTGTCTCGTACTACATGGTACTGAAATCCGTA : 12392 vulgar: NvOr301FIX 348 414 . LHQN01017803.1 12667 12391 - 118 M 51 153 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 12392 12667 118 - . gene_id 1 ; sequence NvOr301FIX ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 12515 12667 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12515 12667 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 12513 12514 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 12437 12514 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 12437 12438 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 12392 12436 . - . LHQN01017803.1 exonerate:protein2genome:local exon 12392 12436 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 12392 12667 118 - . alignment_id 1 ; Query NvOr301FIX ; Align 12668 349 153 ; Align 12437 400 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr301FIX Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 350 -> 412 Target range: 28671 -> 27584 351 : ValPheAsnAspThrTyrCysGlyTyrTrpTyrAsnIleSerProAsnAlaArgLysTyr : 370 :!!||| ! !! !||| !!!.! ! |||||||||! !||||||!...!!!:!! LeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGlnThrLeu 28671 : TTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAAACTCTG : 28614 371 : ThrGlnMetValMetValArgSerMetLysProCysIleIleThrAlaGlyGlyLeuIle : 390 ! !:!:!.!:!! !||||||:!!! ||| :!::!!|||||||||||||||||| TyrValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGlyLeuIle 28613 : TACGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGATT : 28554 391 : AsnMetAsnLeuGlnSerPhePheAla >>>> Target Intron 1 >>>> IleL : 401 ::!:!!||||||:!!!!!||| !! 901 bp ! !| SerLeuAsnLeuGluThrPheAlaGlu++ ++ThrL 28553 : TCCTTGAATTTGGAGACTTTTGCCGaggt.........................agACTT : 27620 402 : euLysThrSerValSerTyrAlaThrValMetLeu : 412 |||||||||||:!!|||||| !.!!|||:!!:!! euLysThrSerIleSerTyrPheAlaValLeuIle 27619 : TAAAAACTTCAATCTCCTATTTCGCGGTACTGATA : 27585 vulgar: NvOr301FIX 350 412 . LHQN01017803.1 28671 27584 - 114 M 49 147 5 0 2 I 0 897 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 27585 28671 114 - . gene_id 2 ; sequence NvOr301FIX ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 28525 28671 . - . LHQN01017803.1 exonerate:protein2genome:local exon 28525 28671 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 28523 28524 . - . intron_id 1 ; splice_site "gt" LHQN01017803.1 exonerate:protein2genome:local intron 27624 28524 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 27624 27625 . - . intron_id 0 ; splice_site "aG" LHQN01017803.1 exonerate:protein2genome:local cds 27585 27623 . - . LHQN01017803.1 exonerate:protein2genome:local exon 27585 27623 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 27585 28671 114 - . alignment_id 2 ; Query NvOr301FIX ; Align 28672 351 147 ; Align 27624 400 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr301FIX Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 355 -> 413 Target range: 22422 -> 22171 356 : TyrCysGlyTyrTrpTyrAsnIleSerProAsnAlaArgLysTyrThrGlnMetValMet : 375 ||| ..! ||||||||| !||| !!!..!!!:! !! ! !:!:!.!:!: TyrGluSerThrTrpTyrAsnSerSerCysLysThrGlnAlaLeuTyrIleLeuAlaLeu 22422 : TACGAATCGACATGGTACAATTCTTCGTGCAAAACGCAAGCGTTATACATATTAGCGTTA : 22365 376 : ValArgSerMetLysProCysIleIleThrAlaGlyGlyLeuIleAsnMetAsnLeuGln : 395 !!!!|||:!:!!.||| !:!::!!||||||||||||!!!|||!..:!!||||||:!! ArgSerSerLeuAsnProProLeuLeuThrAlaGlyGlyPheIleThrLeuAsnLeuLys 22364 : CGGAGTAGCCTAAACCCTCCCTTGTTAACCGCCGGTGGATTTATAACGTTGAATTTAAAG : 22305 396 : SerPhePheAla >>>> Target Intron 1 >>>> IleLeuLysThrSerValS : 406 !!!|||! ! ! 77 bp |||:!!|||:!!||||||| ThrPheSerGlu++ ++IleIleLysSerSerValS 22304 : ACCTTCTCAGAGgt.........................agATTATAAAATCATCCGTGT : 22195 407 : erTyrAlaThrValMetLeuSer : 413 ||||| !|||||||||! !||| erTyrTyrThrValMetGlnSer 22194 : CTTACTATACGGTGATGCAATCG : 22172 vulgar: NvOr301FIX 355 413 . LHQN01017803.1 22422 22171 - 112 M 44 132 5 0 2 I 0 73 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 22172 22422 112 - . gene_id 3 ; sequence NvOr301FIX ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 22291 22422 . - . LHQN01017803.1 exonerate:protein2genome:local exon 22291 22422 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 22289 22290 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 22214 22290 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 22214 22215 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 22172 22213 . - . LHQN01017803.1 exonerate:protein2genome:local exon 22172 22213 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 22172 22422 112 - . alignment_id 3 ; Query NvOr301FIX ; Align 22423 356 132 ; Align 22214 400 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr301FIX Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 336 -> 413 Target range: 532 -> 207 337 : IleCysTyrAlaAlaGlnMetThrLeuAsnSerSerGluIleValPheAsnAspThrTyrCysG : 358 :!!||||||.!!:!!:!!! ... ... :::::!.!!! ! !! !||| !! ValCysTyrThrSerLysThrAlaGluLysIleTyrPheLeuLeuLeuIleArgArgTyrAspA 532 : GTTTGTTATACTTCAAAAACtgcagaaaaaatatattttctgttACTCATTCGCAGGTACGATG : 469 359 : lyTyrTrpTyrAsnIleSerProAsnAlaArgLysTyrThrGlnMetValMetValArgSerMe : 379 .! |||||||||! !!!!! !...:!!!:!! ! !! !:!:!.!:!: !||||||:! laValTrpTyrAsnSerThrGlnArgSerGlnIleLeuTyrLeuLeuAlaLeuArgArgSerLe 468 : CAGTATGGTACAACAGTACGCAGCGATCGCAAATTTTGTACCTGTTAGCTTTAAGGAGGTCTTT : 406 380 : tLysProCysIleIleThrAlaGlyGlyLeuIleAsnMetAsnLeuGlnSerPhePheAla > : 400 :! ||| :!::!!:!!|||||||||||||||::::!!|||:!!:!!!!!|||! ! uThrProProLeuLeuSerAlaGlyGlyLeuIleSerLeuAsnMetGluThrPheSerLys++ 405 : AACTCCACCACTGCTTTCTGCAGGAGGACTGATTTCGTTGAATATGGAAACTTTTTCGAAGgt. : 341 401 : >>> Target Intron 1 >>>> IleLeuLysThrSerValSerTyrAlaThrValMetLe : 412 94 bp |||||||||||||||||||||!:: !||||||!!: ++IleLeuLysThrSerValSerTrpPheThrValIleLy 340 : ........................agATATTAAAAACTTCTGTTTCCTGGTTCACGGTAATAAA : 213 413 : uSer : 413 !||| sSer 212 : ATCG : 208 vulgar: NvOr301FIX 336 413 . LHQN01017803.1 532 207 - 106 M 63 189 5 0 2 I 0 90 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 208 532 106 - . gene_id 4 ; sequence NvOr301FIX ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 344 532 . - . LHQN01017803.1 exonerate:protein2genome:local exon 344 532 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 342 343 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 250 343 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 250 251 . - . intron_id 0 ; splice_site "AG" LHQN01017803.1 exonerate:protein2genome:local cds 208 249 . - . LHQN01017803.1 exonerate:protein2genome:local exon 208 249 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 208 532 106 - . alignment_id 4 ; Query NvOr301FIX ; Align 533 337 189 ; Align 250 400 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747952|gb|AGS43071.1| odorant receptor Or3l [Cephus cinctus] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 164 -> 252 Target range: 33846 -> 34564 165 : LeuCysCysPheAlaLeuTyrAlaSerSerMetIleLeuLeuLeuTyrGlyTyrCysPhe : 184 ||| !! !|||!.!|||!:!!.!!!!! !!!::!!:!!! !:!!||| !||||||!:! LeuLeuPhePheValLeuPheValCysPheIleLeuValHisIleTyrIleTyrCysTyr 33847 : TTGCTTTTCTTCGTGCTGTTCGTATGCTTCATCCTTGTACACATCTACATTTATTGTTAC : 33904 185 : ValGlyGluCysLeuIleHisGlu >>>> Target Intron 1 >>>> SerThrL : 195 :!!|||||| |||:!! .!. 454 bp |||! !: IleGlyGluMetLeuLeuThrHis+- ++SerArgG 33905 : ATAGGAGAGATGCTACTCACACATgc.........................agAGCAGAG : 34391 196 : ysIleHisGluAlaCysAlaGlnCysThrTrpTyrSerMetProLeuIleTyrGlnLysA : 215 !!!!: !.!.:!!..! !:!!! !.!||||||!:!:!: !!! ! ! ! |||. luMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProProGluAlaLysC 34392 : AAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCAGAAGCCAAGT : 34451 216 : laLeuIleMetCysMetLeuCysAlaGlnArgProLeuGlnLeuThrAlaAlaLysPheT : 235 .!|||:!!.!. !|||! ! ! .!! ||||||||| |||||||||!.!|||||| ysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAlaGlyLysPheS 34452 : GCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCAGGAAAATTCA : 34511 236 : yrValPheSerLeuAspSerPheSerAsnValIleLysThrSerIleAlaTyr : 252 !..!||||||:!!!!:! !||||||!.!|||! ! :::||| ::: erThrPheSerMetGluMetPheSerThrValSerProIleAsnIleHisPhe 34512 : GTACCTTCTCCATGGAAATGTTCAGTACTGTAAGCccgataaatattcatttt : 34564 vulgar: gi|528747952|gb|AGS43071.1| 164 252 . KQ414804.1 33846 34564 + 117 M 28 84 5 0 2 I 0 450 3 0 2 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33847 34564 117 + . gene_id 1 ; sequence gi|528747952|gb|AGS43071.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33847 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33847 33930 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 1 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34564 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34564 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33847 34564 117 + . alignment_id 1 ; Query gi|528747952|gb|AGS43071.1| ; Align 33847 165 84 ; Align 34385 193 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr298 Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 332 -> 402 Target range: 34375 -> 34668 333 : ValGluMetGlyGluLysValGlyAlaSerAlaTyrAspIleSerTrpTyrAspPheHis : 352 :!! ..!.!!..!:!!:!!.!! !|||||||||!!: !!:!||||||:!! !! IlePheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSer 34376 : ATATTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCA : 34433 353 : ProGluAlaValArgGlnLeuMetPheCysIleLeuArgAlaAsnLysProLeuAsnVal : 372 ||| !! !!.!!:! |||:!:||| !!!:! !|||.!! !:::|||||| !:!! ProProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeu 34434 : CCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTG : 34493 373 : ThrAlaGlyLysPhePheSerLeuAsnArgAsnSerTyrLysAsn >>>> Target I : 388 ||||||||||||||| !!!!!!!::!! !.!.! !!:!!..!.! 83 ThrAlaGlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34494 : ACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt............. : 34543 389 : ntron 1 >>>> ValIleMetThrSerSerSerTyrAlaSerValLeuLeuSerIle : 402 bp ::::!:! |||:!!! !.!!||| !||||||||||||!!!:!! ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeuThrVal 34544 : ............agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTCACAGTT : 34668 vulgar: NvOr298 332 402 . KQ414804.1 34375 34668 + 107 M 55 165 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34376 34668 107 + . gene_id 1 ; sequence NvOr298 ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34376 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34376 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34668 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34668 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34376 34668 107 + . alignment_id 1 ; Query NvOr298 ; Align 34376 333 165 ; Align 34624 388 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr301FIX Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 111 -> 235 Target range: 456831 -> 457411 112 : ValTyrGluGlnIleAlaSerAspTrpLysLysIleLysAspLysAsnGluLeuGluT : 131 :!!|||!!:.!.||||||..!|||||||||..!:!:|||:!!! !.!.|||:!!||| IleTyrAspAsnIleAlaAspAspTrpLysSerLeuLysAsnMetGluGluIleGluI 456832 : ATTTACGACAATATCGCTGACGATTGGAAATCATTGAAGAACATGGAAGAAATCGaga : 456889 132 : yrLeuHisGlyArgAlaLysGluGlyLysIleIleThrIleLeuTyrLeu{G} >>> : 148 :::... |||!!.! |||!:!! !.!!|||:!! ! !{ } leIleArgLysTyrAlaAsnGlyGlyArgArgPheThrLeuAlaIleAla{I}++ 456890 : ttattcgaaaatatgcGAACGGTGGCAGGAGATTTACACTTGCAATAGCA{A}gt... : 456943 149 : > Target Intron 1 >>>> {ly}TyrGlyAlaValGlyCysThrIlePheAla : 158 214 bp { !}! ! ! ! !|||... !:!!.!!.!! ++{le}SerThrTyrCysGlyAlaLeuValIleThr 456944 : ......................ag{TT}TCTACTTATTGTGGCGCACTGGTTATTACC : 457184 159 : SerThrProTyrLeuProLeuPheLeuAspLeuValIleProLeuAsnValSerArgA : 178 !!! !! ! !!!!|||:!!!!.||||||:!!|||:!!|||||||||! !|||||| ThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSerArgP 457185 : ACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATCACGCC : 457244 179 : spLysIleTyrProTyrTyrAlaAspTyrValIleValAspSerGluLysTyrPheTy : 197 ! ! ! ! |||!!:||| .!!||||||! !:!!||||||.!.:! roCysGluLeuTyrLeuThrAlaGluTyr---PheValAspMetLysLysTyrMetHi 457245 : CCTGTGAGTTATACCTTACAGCGGAATAC---TTTGTCGACATGAAAAAGTATATGCA : 457298 198 : rThrLeuTyrThrLeuHisGlyIlePheIleIleIleLeuValThrMetSerAlaIle : 216 ! !:!! !.!! ||| !||| !:!!:!::!!!.!.!!! !!! !! ! sTyrIleIleAla---HisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThr 457299 : TTATATCATCGCG---CACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACA : 457352 217 : SerIleAspCysLeuPheIleMetMetValLysHisSerValGlyLeuPheGlnIle : 235 :!!! !!!:! !|||.!!|||! !! ||| !||| ! !|||||||||:!!:!! AlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457353 : GCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: NvOr301FIX 111 235 . KQ414815.1 456831 457411 + 121 M 36 108 S 0 1 5 0 2 I 0 210 3 0 2 S 1 2 M 39 117 G 1 0 M 13 39 G 1 0 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 456832 457411 121 + . gene_id 1 ; sequence NvOr301FIX ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 456832 456940 . + . KQ414815.1 exonerate:protein2genome:local exon 456832 456940 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 456941 456942 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 456941 457154 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 457153 457154 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 457155 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457155 457411 . + . insertions 0 ; deletions 2 KQ414815.1 exonerate:protein2genome:local similarity 456832 457411 121 + . alignment_id 1 ; Query NvOr301FIX ; Align 456832 112 108 ; Align 457157 149 117 ; Align 457274 189 39 ; Align 457313 203 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr301FIX Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 355 -> 397 Target range: 1228545 -> 1228419 356 : TyrCysGlyTyrTrpTyrAsnIleSerProAsnAlaArgLysTyrThrGlnMetVa : 374 |||! !..! ||||||!!.:!!||| !!!!. !!:!::! ! ! ! |||:! TyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMe 1228545 : TACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGAT : 1228491 375 : lMetValArgSerMetLysProCysIleIleThrAlaGlyGlyLeuIleAsnMetA : 393 !...:!!|||:!!:!:||||||||||||:!:||||||||||||||| !.!.|||| tGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetA 1228490 : GCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGA : 1228434 394 : snLeuGlnSerPhe : 397 ||:!!:!!!:!||| snMetGluAsnPhe 1228433 : ACATGGAGAACTTT : 1228420 vulgar: NvOr301FIX 355 397 . KQ414851.1 1228545 1228419 - 116 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228420 1228545 116 - . gene_id 1 ; sequence NvOr301FIX ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1228420 1228545 . - . KQ414851.1 exonerate:protein2genome:local exon 1228420 1228545 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228420 1228545 116 - . alignment_id 1 ; Query NvOr301FIX ; Align 1228546 356 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr301FIX Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 353 -> 406 Target range: 1222511 -> 1222352 354 : AspThrTyrCysGlyTyrTrpTyrAsnIleSerProAsnAlaArgLysTyrThrGl : 372 |||!:!|||..!..! ! ||||||.!.:!! !! !!!.!.!!:!|||! ! ! ! AspSerTyrAlaSerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTy 1222511 : GACAGTTACGCTTCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTA : 1222457 373 : nMetValMetValArgSerMetLysProCysIleIleThrAlaGlyGlyLeuIleA : 391 ! !:!!...:!!||||||!!:::!|||||||||:!!||||||||||||:!! !. rThrMetGlnMetArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisG 1222456 : CACGATGCAAATGAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATG : 1222400 392 : snMetAsnLeuGlnSerPhePheAlaIleLeuLysThrSerValSer : 406 !.||||||:!!:!!|||||| !:!!! !!!.!.!! !:!!!:! luMetAsnIleGluSerPheGlyIleValCysAsnAsnMetIleAsn 1222399 : AGATGAACATCGAGAGTTTCGGAATAGTATGTAATAATATGATAAAT : 1222353 vulgar: NvOr301FIX 353 406 . KQ414851.1 1222511 1222352 - 112 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222353 1222511 112 - . gene_id 2 ; sequence NvOr301FIX ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1222353 1222511 . - . KQ414851.1 exonerate:protein2genome:local exon 1222353 1222511 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222353 1222511 112 - . alignment_id 2 ; Query NvOr301FIX ; Align 1222512 354 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr301FIX Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 111 Query range: 155 -> 235 Target range: 1229467 -> 1229230 156 : IlePheAlaSerThrProTyrLeuProLeuPheLeuAspLeuValIleProLeuAs : 174 :!!||| ! !..!|||! !!! !! ! !||||||:!!|||:!!|||! !|| ValPheLeuLeuValProLeuPheGlyProAlaLeuAspIleValLeuProSerAs 1229467 : GTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCGTCCTTCCATCAAA : 1229413 175 : nValSerArgAspLysIleTyrProTyrTyrAlaAspTyrValIleValAspSerG : 193 |! !!!!||| ::! ! ! ! !!:! !.!:!!|||:!!||| !!|||..!! nGluThrArgProArgGlnGlnLeuPheArgValAsnTyrIleIlePheAspGlnA 1229412 : TGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAATTTTCGACCAAG : 1229356 194 : luLysTyrPheTyrThrLeuTyrThrLeuHisGlyIlePheIleIleIleLeuVal : 211 ! ! ||||||!:! !:!!||| :!!!!. !.!!!:: !! !|||:!!:!! laAspTyrPhePheTyrValTyr---IleGlnLeuPheTrpCysThrIleValLeu 1229355 : CAGACTATTTTTTCTACGTGTAT---ATTCAATTGTTTTGGTGTACAATCGTTCTT : 1229305 212 : ThrMetSerAlaIleSerIleAspCysLeuPheIleMetMetValLysHisSerVa : 230 ..!|||:!! !|||!!!:!!|||! |||!:!!!:!!:!!::!! ! |||:!! ValMetAlaIleIleThrValAspSerLeuTyrMetIleIleIleTyrHisAlaSe 1229304 : GTAATGGCCATTATCACCGTAGATTCATTGTACATGATCATAATTTACCATGCCAG : 1229248 231 : lGlyLeuPheGlnIle : 235 !|||:!!||| ||| rGlyMetPheAlaIle 1229247 : CGGAATGTTCGCTATA : 1229231 vulgar: NvOr301FIX 155 235 . KQ414851.1 1229467 1229230 - 111 M 45 135 G 1 0 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229231 1229467 111 - . gene_id 3 ; sequence NvOr301FIX ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229231 1229467 . - . KQ414851.1 exonerate:protein2genome:local exon 1229231 1229467 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1229231 1229467 111 - . alignment_id 3 ; Query NvOr301FIX ; Align 1229468 156 135 ; Align 1229333 202 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr301FIX Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 355 -> 397 Target range: 1233381 -> 1233255 356 : TyrCysGlyTyrTrpTyrAsnIleSerProAsnAlaArgLysTyrThrGlnMetVa : 374 |||! !..! ||||||!!.:!! !! !!!!. !!:!::! ! ! ! ! !:! TyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMe 1233381 : TACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGAT : 1233327 375 : lMetValArgSerMetLysProCysIleIleThrAlaGlyGlyLeuIleAsnMetA : 393 !...:!!|||:!!:!:|||||||||:!!:!:||||||||||||||| !.!.|||| tGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetA 1233326 : GCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGA : 1233270 394 : snLeuGlnSerPhe : 397 ||:!!:!!!:!||| snMetGluAsnPhe 1233269 : ACATGGAGAACTTT : 1233256 vulgar: NvOr301FIX 355 397 . KQ414851.1 1233381 1233255 - 104 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233256 1233381 104 - . gene_id 4 ; sequence NvOr301FIX ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1233256 1233381 . - . KQ414851.1 exonerate:protein2genome:local exon 1233256 1233381 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233256 1233381 104 - . alignment_id 4 ; Query NvOr301FIX ; Align 1233382 356 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 660 Query range: 21 -> 349 Target range: 208185 -> 210774 22 : AsnLysAsnTyrLysSerAspIleGluTyrAlaLeuLysLeuAsnArgTrpLeuLeuA : 41 |||!:!|||||||||!:!|||:!:...!:! !:!!:::|||||| !||| !|||! AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 42 : snProIleSerLeuTrpProLeuProSerHisValSerAlaLeuLysLysIleGlnPh : 60 !. !|||.!!! !|||||| ! !!! ! !! !||| !|||:!!!!.! !||| ysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHi 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCA : 208300 61 : eLysPheIleArgThrMetGlyTrpPhePheLeuAlaPheLeuIleIleProThrSer : 79 !! .!!:!!!.!..!:!:.!! ! !!!.|||!.!|||:!!:!:|||||||||.!! sIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGly 208301 : TATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGC : 208357 80 : LeuHisThrIleLeuValGlnThrAspProAsnValLysLeuLysMetIleGlyProL : 99 :!! !.!!||||||||| !||| ! !!! !:!!||||||!!: !.!! !!| MetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaL 208358 : ATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTC : 208417 100 : euGlyPheCysValMetValIleValLysPhePheValPheValValArgAlaLysAs : 118 ||.!!|||! !:!!|||!.!.!!..!|||!:! ! :!!.!...!||||||! ! :! euSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAs 208418 : TGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGA : 208474 119 : nIleLysIleCysValAspHisValValAlaAspTrpArgAsnValAsnThrIleGlu : 137 !|||::!! ||||||!!::!!|||! !||||||||||||||||||.!. ! ||| pIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGlu 208475 : CATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAG : 208531 138 : AspArgGluIleMetIleAspSerAlaArgIleAlaArgLeuPheThrAlaAlaSerA : 157 ||||||:!!||||||:!:|||!:!|||!!!.!!|||||| !.!.! !!.! !!!!! AspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysG 208532 : GACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCG : 208591 158 : laLeuPheMetTyrGlyGlyGlyIleSerTyrThrIleIleLeuProLeuThrArgSe : 176 .! !||||||||||||||| ||| ||| ||| !|||||||||||||||.. lyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAs 208592 : GAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGA : 208648 177 : rLysSerLeu<->SerSerAspAsnValThrIleLysValLeuProTyrProCysTyr : 194 !||| !:!! ..!.!!! !|||:!!||| !!:! !||| !|||||| ! ! pLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValPro 208649 : CAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCT : 208705 195 : PhePhePhePheAspProGlnIleSerProIleTyrGluLeuIlePheLeuAlaTyrI : 214 |||.!!.!.||| !!:! !||||||:!: !!|||:!!.!!!:! !!.! ! : LysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnL 208706 : AAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAAT : 208765 215 : leLeuCysAsnIleValArgTyrSerThrThrSerGlyValCysSerLeuAlaValVa : 233 !:|||! ..!.!!||| !:!!!:!! !||| !|||!.!|||.!!||||||!.!:! euLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLe 208766 : TGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCT : 208822 234 : lPheAlaMetHisValTyrGlyGlnCysGlnValLeuMetArgLeuLeuAspAspPhe : 252 !.!!|||||||||!.!! !|||||| |||:!!|||||| !! !:!!!!: ! !!. uLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeu 208823 : GCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTG : 208879 253 : ValAspGlyGluArgGluLysSerSerThrLeuHisGlnArgLeuAlaAsnValValV : 272 |||||||||..!..!!!::!!..!!.!!.!||| !!|||||||||||||||:!!|||! ValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleValG 208880 : GTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCGTGG : 208939 273 : alArgHisLeuArgIleLeu{Ar} >>>> Target Intron 1 >>>> {g}Le : 280 !!:!|||:!!|||:!::!!{!.} 1536 bp {!}!! luGlnHisValArgValIle{As}++ ++{n}Ph 208940 : AGCAGCATGTTCGAGTGATC{AA}gt.........................ag{T}TT : 210499 281 : uIleSerThrMetGluAsnIlePheAsnGluIlePheLeuIleGluValValGlyCys : 299 !|||:!! !! ||||||:!!.!.:!!||||||! |||||||||:!!||||||||| eIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGluMetValGlyCys 210500 : TATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAATGGTGGGGTGC : 210556 300 : ThrPheIleLeuCysPheLeuGlyTyrTyrCysMetThr >>>> Target Intro : 313 |||.!.! !:!!|||||||||||||||||| |||! ! 66 bp ThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210557 : ACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt................. : 210600 314 : n 2 >>>> AspLeuThrGluSerGluThrValGlyLeuIleAlaTyrPheLeuLeu : 328 !!:! ! !...!.!!!: !!:!!.!! !:!:.!!|||.!.:!!||| ++GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValLeu 210601 : ........agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTACTC : 210709 329 : LeuIleSerLeuThrPheAsnValPheAlaPheCysTyrIleGlyGluLeuIleThrA : 348 |||! !|||:!!|||||||||:!!||| !||||||||||||||||||:!!:!:.!!. LeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAlaG 210710 : CTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGCTG : 210769 349 : snGln : 349 !.||| luGln 210770 : AACAg : 210774 vulgar: gi|528747946|gb|AGS43068.1| 21 349 . KQ414889.1 208185 210774 + 660 M 158 474 G 0 3 M 99 297 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 210774 660 + . gene_id 1 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208186 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208961 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208186 210774 660 + . alignment_id 1 ; Query gi|528747946|gb|AGS43068.1| ; Align 208186 22 474 ; Align 208663 180 297 ; Align 210499 280 99 ; Align 210664 313 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 653 Query range: 16 -> 361 Target range: 284481 -> 287025 17 : ValGlnThrGluGlnAsnLysAsnTyrLysSerAspIleGluTyrAlaLeuLysLeuA : 36 ||| :!!..! :!!..!!..!:: ! !!!||| !|||::!:!!:!!:!!| ValThrSerSerThrAspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetA 284482 : GTCACTTCTTCAACCGATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGA : 284539 37 : snArgTrpLeuLeuAsnProIleSerLeuTrpProLeuProSerHisValSerAlaLe : 55 ||||||||!!!|||!!.||||||.!!:!!||||||||| ! ! !|||!!!.!!|| snArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLe 284540 : ACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTT : 284596 56 : uLysLysIleGlnPheLysPheIleArgThrMetGlyTrpPhePheLeuAlaPheLeu : 74 |:!!||||||...! ! ! !!:!! ! !!!:.!!!! |||.!.:!!!.!|||||| uGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeu 284597 : GGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTC : 284653 75 : IleIleProThrSerLeuHisThrIleLeuValGlnThr<->AspProAsnValLysL : 93 :!::!!||| !:!!||| !|||:!:|||! !:!!||| |||! !:!!..!|||: LeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysI 284654 : TTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGA : 284713 94 : euLysMetIleGlyProLeuGlyPheCysValMetValIleValLysPhePheValPh : 112 !!||||||||||||||||||.!!||||||:!!|||!.! :!!|||!:!!:!:!!.! leLysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLe 284714 : TCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCT : 284770 113 : eValValArgAlaLysAsnIleLysIleCysValAspHisValValAlaAsp{Tr} : 130 .:!! !|||!.! !!.||| !|||||| ! !!:!! !||||||{||} uIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIleArgAlaAsp{Tr}++ 284771 : AATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGAC{TG}gt : 284826 131 : >>>> Target Intron 1 >>>> {p}ArgAsnValAsnThrIleGluAspArgG : 140 1012 bp {|}! !::: !!:: |||:::|||| +-{p}LeuSerHisSerGlnGluGluGluArgG 284827 : .........................ac{G}CTTTCGCATAGtcaagaagaggagagag : 285866 141 : luIleMetIleAspSerAlaArgIleAlaArgLeuPheThrAlaAlaSerAlaLeuPh : 159 ||||||||! |||||||||||||||!.!|||! !!!..!! ! !!!!||| !|| luIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPh 285867 : agatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTT : 285923 160 : eMetTyrGlyGlyGlyIleSerTyrThrIleIleLeuProLeuThrArgSerLysSer : 178 |||||||..!||||||.!!! !||||||! :!::!!|||||| !! ! !:::!!! eMetTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThr 285924 : CATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACG : 285980 179 : LeuSerSerAspAsnValThrIleLysValLeuProTyrProCysTyrPhePhePheP : 198 !! !! !||||||! !|||:!:!:! !! ! !!!:!||| !||| ! !.!!. GluIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuL 285981 : GAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTC : 286040 199 : heAspProGlnIleSerProIleTyrGluLeuIlePheLeuAlaTyrIleLeuCysAs : 217 !!||||||!::! !|||||| !:!|||:!!:!: !!! ! ! !|||..! euAspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAl 286041 : TCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGC : 286097 218 : nIleValArgTyrSerThrThrSerGlyValCysSerLeuAlaValValPheAlaMet : 236 .!!|||! !||||||..!||| !|||!.!||||||||||||!.!||||||!.!||| aPheValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMet 286098 : GTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATG : 286154 237 : HisValTyrGlyGlnCysGlnValLeuMetArgLeuLeuAspAspPheValAspGly< : 256 ||||||! !||||||! !::!:!!|||:!!! ! !|||||| ! .!!||||||||| HisValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyV 286155 : CACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAG : 286214 257 : -><->GluArgGluLysSerSerThrLeuHisGlnArgLeuAlaAsnValValValAr : 273 ! !|||:!! !! !||||||! !.!.|||||||||!.!:!!:!!:!!! !!. alLysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHi 286215 : TGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCA : 286271 274 : gHisLeuArgIleLeu{Ar} >>>> Target Intron 2 >>>> {g}LeuIle : 281 !||||||!:!||||||{ !} 408 bp {!}!!!||| sHisLeuLysIleLeu{Gl}++ ++{y}PheIle 286272 : TCATCTGAAGATACTG{GG}gt.........................ag{T}TTTATA : 286703 282 : SerThrMetGluAsnIlePheAsnGluIlePheLeuIleGluValValGlyCysThrP : 301 ||| !!!:|||...:!!.!.|||||||||! !!!!:!!||||||:!!|||||||||! SerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrL 286704 : TCGCAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGT : 286763 302 : heIleLeuCysPheLeuGlyTyrTyrCysMetThr >>>> Target Intron 3 : 313 !.! !:!!||||||||||||||||||! :!!||| 80 bp euAsnIleCysPheLeuGlyTyrTyrLeuLeuThr++ 286764 : TGAACATATGCTTTTTGGGATATTATTTACTGACGgt..................... : 286801 314 : >>>> AspLeuThrGluSerGluThrValGlyLeuIleAlaTyrPheLeuLeuLeuI : 330 !!:! ! !:!!|||||||||:!!||| !|||.!!|||! ! !||||||: ++GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuV 286802 : ....agGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGG : 286930 331 : leSerLeuThrPheAsnValPheAlaPheCysTyrIleGlyGluLeuIleThrAsnGl : 349 !!|||!!!||||||||||||||| !.!!|||||||||||||||:!!:!!:!!.!.|| alSerPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGl 286931 : TATCTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACa : 286987 350 : nCysMetGlnIleGlyGlnAlaAlaTyrMetThrGlu : 361 | ... ||| ....!! !||| !||| nValPhePheIleThrSerThrIleTyrTyrCysGlu 286988 : ggtatttttcattacttcaACGATCTATTATTGTGAA : 287025 vulgar: gi|528747946|gb|AGS43068.1| 16 361 . KQ414889.1 284481 287025 + 653 M 71 213 G 0 3 M 42 126 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 125 375 G 0 6 M 23 69 S 0 2 5 0 2 I 0 404 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284482 287025 653 + . gene_id 2 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284482 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284482 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286698 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 287025 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 287025 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284482 287025 653 + . alignment_id 2 ; Query gi|528747946|gb|AGS43068.1| ; Align 284482 17 213 ; Align 284698 88 126 ; Align 285839 131 375 ; Align 286220 256 69 ; Align 286700 280 99 ; Align 286879 313 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 637 Query range: 16 -> 361 Target range: 278534 -> 280238 17 : ValGlnThrGluGlnAsnLysAsnTyrLysSerAspIleGluTyrAlaLeuLysLeuA : 36 ||| :!!..! :!!..!!..!::!!.!!!||| !|||::!:!!:!!:!!| ValThrSerSerThrAspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetA 278535 : GTCACTTCGTCAACCGATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGA : 278592 37 : snArgTrpLeuLeuAsnProIleSerLeuTrpProLeuProSerHisValSerAlaLe : 55 ||||||||!!!|||!!.||||||.!!:!!||||||||| ! ! !|||!!!.!!|| snArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLe 278593 : ACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTT : 278649 56 : uLysLysIleGlnPheLysPheIleArgThrMetGlyTrpPhePheLeuAlaPheLeu : 74 |:!!||||||...! ! ! !!:!! ! !!!:.!!!! |||.!.:!!!.!|||||| uGluLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeu 278650 : GGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTC : 278706 75 : IleIleProThrSerLeuHisThrIleLeuValGlnThr<->AspProAsnValLysL : 93 :!::!!||| !:!!||| !|||:!:|||! !:!!||| |||! !:!!..!|||: LeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysI 278707 : TTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGA : 278766 94 : euLysMetIleGlyProLeuGlyPheCysValMetValIleValLysPhePheValPh : 112 !!||||||||||||||||||.!!||||||..!|||!.!! :!!|||!:!!:!:!!.! leLysMetIleGlyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLe 278767 : TCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCT : 278823 113 : eValValArgAlaLysAsnIleLysIleCysValAspHisValValAlaAspTrpArg : 131 .:!! !|||!.! !!.||| ! !||||||:!! !!:!! !.!!|||||| ! uMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSer 278824 : AATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCT : 278880 132 : <-><-><->AsnValAsnThrIleGluAspArgGluIleMetIleAspSerAlaArgI : 148 ::: !... |||:::||||||||||||! ||||||||||||| LeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgI 278881 : CTTACACTTTCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAA : 278940 149 : leAlaArgLeuPheThrAlaAlaSerAlaLeuPheMetTyrGlyGlyGlyIleSerTy : 167 ||!.!|||! !!!..!! ! !|||||| !|||||||||..!||||||:!!! !|| leGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTy 278941 : TTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTA : 278997 168 : rThrIleIleLeuProLeuThrArgSerLysSerLeuSerSerAspAsnValThrIle : 186 |||| !:!::!!|||||| ! ! !:::!!! !! !! !||||||! !|||:!: rThrAlaValMetProLeuPheAlaValArgThrGluIleIleAspAsnGluThrVal 278998 : CACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTG : 279054 187 : LysValLeuProTyrProCysTyrPhePhePhePheAspProGlnIleSerProIleT : 206 !:! !! ! !!!:!||| !||| ! !.!!.!!||||||!::! !|||||| ! ArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerP 279055 : AGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGT : 279114 207 : yrGluLeuIlePheLeuAlaTyrIleLeuCysAsnIleValArgTyrSerThrThrSe : 225 :!|||:!!:!: !!! ! ! !|||..! .!!||| !||||||..!||| heGluIleValGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrVa 279115 : TCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGT : 279171 226 : rGlyValCysSerLeuAlaValValPheAlaMetHisValTyrGlyGlnCysGlnVal : 244 !|||!.!||||||||| !!.!||||||!.!|||||||||! !||||||! !::!:!! lGlyAlaCysSerLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIle 279172 : TGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATA : 279228 245 : LeuMetArgLeuLeuAspAspPheValAspGly<-><->GluArgGluLysSerSerT : 262 |||:!!! ! !|||||| ! .!!:!!|||||| ! !|||:!!!..! !|||| LeuValThrLysLeuAspLysLeuIleAspGlyValLysGlyArgLysSerLeuSerT 279229 : CTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCA : 279288 263 : hrLeuHisGlnArgLeuAlaAsnValValValArgHisLeuArgIleLeu{Ar} >> : 279 ||! !.!.|||||||||!.!:!!:!!:!!! !!.!||||||!:!||||||{ !} hrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 279289 : CGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt.. : 279343 280 : >> Target Intron 1 >>>> {g}LeuIleSerThrMetGluAsnIlePheAsn : 289 571 bp {!}!!!|||||| !!!:|||...:!!.!.||| ++{y}PheIleSerGlnIleGluGlyLeuLeuAsn 279344 : .......................ag{T}TTTATATCGCAAATCGAGGGGCTCCTGAAC : 279940 290 : GluIlePheLeuIleGluValValGlyCysThrPheIleLeuCysPheLeuGlyTyrT : 309 ||||||! !!!!:!!||||||:!!|||||||||!!.! !:!!||||||||| !|||| GluIleCysPheValGluValIleGlyCysThrLeuAsnIleCysPheLeuThrTyrT 279941 : GAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGACATATT : 280000 310 : yrCysMetThr >>>> Target Intron 2 >>>> AspLeuThrGluSerGlu : 318 ||! :!:||| 80 bp !!:! ! !:!!!:!!!: yrLeuLeuThr++ ++GluTrpGluGlnAsnAsp 280001 : ATTTACTCACGgt.........................agGAATGGGAGCAAAATGAC : 280107 319 : ThrValGlyLeuIleAlaTyrPheLeuLeuLeuIleSerLeuThrPheAsnValPheA : 338 .!!:!!||| !.!!.!!|||!!.:!!!!!||||||||||||||||||||||||||| AlaIleGlyThrPheThrTyrLeuMetPheLeuIleSerLeuThrPheAsnValPheI 280108 : GCTATAGGAACGTTCACGTATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCA : 280167 339 : laPheCysTyrIleGlyGluLeuIleThrAsnGlnCysMetGlnIleGlyGlnAlaAl : 357 !.!!|||||||||||||||:!!:!!:!!.!.||| ... |||........! leLeuCysTyrIleGlyGluIleLeuSerGluGlnValPhePheIleSerSerThrIl 280168 : TACTCTGTTACATCGGTGAAATTCTCTCCGAACaggtatttttcatttcttcaacGAT : 280224 358 : aTyrMetThrGlu : 361 !||| !||| eTyrTyrCysGlu 280225 : CTATTATTGTGAA : 280238 vulgar: gi|528747946|gb|AGS43068.1| 16 361 . KQ414889.1 278534 280238 + 637 M 71 213 G 0 3 M 44 132 G 0 9 M 124 372 G 0 6 M 23 69 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278535 280238 637 + . gene_id 3 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278535 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278535 279340 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280238 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280238 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278535 280238 637 + . alignment_id 3 ; Query gi|528747946|gb|AGS43068.1| ; Align 278535 17 213 ; Align 278751 88 132 ; Align 278892 132 372 ; Align 279270 256 69 ; Align 279913 280 99 ; Align 280092 313 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 513 Query range: 8 -> 417 Target range: 256586 -> 258738 9 : ArgIleLeuSerThrGluAspLysValGlnThrGluGlnAsnLysAsnTyrLysSerA : 28 ||| !:!!|||||| ! !!!.! ! .!!! ! !!!.! !|||!:!|||||| ArgArgMetSerThrMetThrAsnGluPheAlaValValLysThrAsnPheLysSerT 256587 : CGTCGCATGAGCACGATGACTAACGAATTCGCCGTGGTAAAGACGAATTTTAAAAGTT : 256644 29 : spIleGluTyrAlaLeuLysLeuAsnArgTrpLeuLeuAsnProIleSerLeuTrpPr : 47 !!! !!!:|||::!|||:!!||||||||||||!!!|||!!.||||||.!! !||||| yrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpPr 256645 : ACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCC : 256701 48 : oLeuProSerHisValSerAlaLeuLysLysIleGlnPheLysPheIleArgThrMet : 66 |! ! !!||| !..!!!!.!!|||:!!::!! ! ! ! !!:!:!.!! !:!: oProSerSerSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleVal 256702 : ACCCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTC : 256758 67 : GlyTrpPhePheLeuAlaPheLeuIleIleProThrSerLeuHisThrIleLeuValG : 86 !!!:: !! !:!! !||| !:!:|||||| !! !||||||..!.!!|||! !. CysTyrGlySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspA 256759 : TGCTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACG : 256818 87 : lnThrAspProAsnValLysLeuLysMetIleGlyProLeuGlyPheCysValMetVa : 105 !. !..! ! ! :::|||:::||| ...||||||:!!.!! !!! :!!!!: spAspSerPheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSe 256819 : ACGACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAG : 256875 106 : lIleValLysPhePheValPheValValArgAlaLysAsnIleLysIleCysValAsp : 124 ! !!.!!!.!:! :!!.!.:!!:!!!:!!.!|||:!!|||::: !||||||!!: rCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGlu 256876 : CTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAG : 256932 125 : HisValValAlaAspTrpArgAsnValAsnThrIleGluAspArgGluIleMetIleA : 144 |||:!!! !.!!|||||||||! |||!..! ! :!!|||!:!:!!:!:|||!!: HisIleGluThrAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetL 256933 : CATATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGA : 256992 145 : spSerAlaArgIleAlaArgLeuPheThrAlaAlaSerAlaLeuPheMetTyrGlyGl : 163 ! !:!||||||.!!!.!|||! ! ! .!!.!! !!!!||| !.!!||| ! .!!|| ysAsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGl 256993 : AGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGG : 257049 164 : yGlyIleSerTyrThrIleIleLeuProLeu<->ThrArgSerLysSerLeuSerSer : 181 | ... ::: ::: ! ! !!||| |||..!! !! !:!!.!!!:! yValPheCysPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsn 257050 : CgttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAAC : 257106 182 : AspAsnValThrIleLysValLeuProTyrProCysTyrPhePhePhePheAspProG : 201 !!:!....!! !:!:::!||||||||| ! !! ||| .!.!!.:!! !. GluThrThrIleValArgValLeuProValThrValTyrLysLysLeuLeuAsnValA 257107 : GAAACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCG : 257166 202 : lnIleSerProIleTyrGluLeuIlePheLeuAlaTyrIleLeuCysAsnIleValAr : 220 !. ||||||! !!|||:!!:!: !!!!! ! ! ! !! !! :::|||:!! spGlnSerProThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAl 257167 : ATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGC : 257223 221 : gTyrSerThrThrSerGlyValCysSerLeuAlaValValPheAlaMetHisValTyr : 239 ! !!!!!:!||| !.!!:!!! !|||||||||!.!|||||||||! |||!.!||| aThrThrSerThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyr 257224 : GACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTAC : 257280 240 : GlyGlnCysGlnValLeuMetArgLeuLeuAspAspPheValAspGlyGluArgGluL : 259 ||||||! ||||||||| !! !:!! !!:||||||:!!! !..!|||.!.: GlyGlnLeuThrValLeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnA 257281 : GGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATC : 257340 260 : ysSerSerThrLeuHisGlnArgLeuAlaAsnValValValArgHisLeuArgIleLe : 278 ::......|||... !:!! ! !..!|||:!!|||..!||| !|| rgGluLysThrPheProPheLysGlnIleGlyValIleValGluHis------HisLe 257341 : GggagaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGCAT------CATTT : 257391 279 : uArgLeuIleSerThrMetGluAsnIlePheAsnGluIlePheLeuIleGluValVal : 297 ||||:!!:!:!!! ! !|||.!!::!! :!:!:: !.!!||| !||| uArgValLeuArg***AspPheCysIleIleSerValValTrpAsnPheGluArgVal 257392 : AAGAGTGCTGAGGTAAGATTTTTGCATTATTTCCGTTGTGTGGAATTTCGAAAGGGTT : 257448 298 : GlyCysThrPheIleLeuCysPheLeuGlyTyrTyrCysMetThrAsp >>>> Tar : 314 ..! ! !.!!.!! !|||! ||| !!:!:!! !!!: ! SerValIleIlePheAlaCys***LeuGlnPheHisIleIleTyrArg+- 257449 : TCTGTGATTATTTTTGCGTGTTAATTGCAGTTTCATATCATATATCGAgg........ : 257501 315 : get Intron 1 >>>> LeuThrGluSerGluThrVal<->GlyLeuIleAlaTyr : 325 766 bp ! !...!!!::: ::: ...||| :::||| ++GluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyr 257502 : .................aggaATGGTCTACGCaagatattcaaaatttgagttcgtaC : 258301 326 : PheLeuLeuLeuIleSerLeuThrPheAsnValPheAlaPheCysTyrIleGlyGluL : 345 |||:!!:!!||||||||||||:::||||||:::|||......|||||||||||||||: PheMetIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluI 258302 : TTTATGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAA : 258361 346 : euIleThrAsnGln >>>> Target Intron 2 >>>> CysMetGlnIleGly : 354 !!:!!|||.!.||| 90 bp |||! !:!!:!!||| leLeuThrGluGln++ ++CysLysLysValGly 258362 : TATTAACAGAACAGgt.........................agTGCAAGAAAGTTGGC : 258478 355 : GlnAlaAlaTyrMetThrGluTrpTyrArgLeuGluGlyLysAsnAlaSerAsnLeuI : 374 .!.!.!!.!|||||||||!!:|||||| !||| ! !|||!.. ! !:!!|||| AspValValTyrMetThrAspTrpTyrTyrLeuProAspLysArgIleLeuAspLeuI 258479 : GACGTGGTTTATATGACAGACTGGTATTATCTACCTGACAAAAGAATACTCGATTTAA : 258538 375 : leAlaLeuIleIleIleSerAsnArgProValPheLeuThrAlaGlyArgMetIleAs : 393 || !:!!||| ! !|||!:! ! !||| :!!|||||||||:::......:: leLeuValIleAlaArgSerSerValValValGlnIleThrAlaGlyLysPhePheHi 258539 : TTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCACCGCGggaaaattctttca : 258595 394 : nLeuSerTyrAsnSerPheCysGln >>>> Target Intron 3 >>>> ValI : 403 :::!||| ! !!!!!||| !!.!. 69 bp |||| sMetSerIleTyrThrPheSerAsp++ ++ValI 258596 : catGTCCATTTACACATTCAGCGATgt.........................agGTAA : 258694 404 : leLysSerSerLeuAlaTyrLeuAsnIleLeuArgGlnValThr : 417 |||||!!!|||!!!||||||||||||:!!||||||||||||:!! leLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnValSer 258695 : TAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGTATCG : 258738 vulgar: gi|528747946|gb|AGS43068.1| 8 417 . KQ414889.1 256586 258738 + 513 M 165 495 G 0 3 M 101 303 G 2 0 M 37 111 5 0 2 I 0 762 3 0 2 M 7 21 G 0 3 M 29 87 5 0 2 I 0 86 3 0 2 M 52 156 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256587 258738 513 + . gene_id 4 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256587 257498 . + . KQ414889.1 exonerate:protein2genome:local exon 256587 257498 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 257499 257500 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local intron 257499 258264 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258263 258264 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 258265 258375 . + . KQ414889.1 exonerate:protein2genome:local exon 258265 258375 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258376 258377 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258376 258465 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 258464 258465 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258466 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258466 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256587 258738 513 + . alignment_id 4 ; Query gi|528747946|gb|AGS43068.1| ; Align 256587 9 495 ; Align 257085 174 303 ; Align 257388 277 111 ; Align 258265 314 21 ; Align 258289 321 87 ; Align 258466 350 156 ; Align 258691 402 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 434 Query range: 20 -> 279 Target range: 303166 -> 304869 21 : GlnAsnLysAsnTyrLysSerAspIleGluTyrAlaLeuLysLeuAsnArgTrpLeuL : 40 !:!||| !|||||||||!.!||||||! |||!.! !|||! !!:!!:!|||:!!| ArgAsnLeuAsnTyrLysLysAspIleValTyrValThrLysHisSerLysTrpIleL 303167 : CGGAATTTGAATTACAAGAAAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCC : 303224 41 : euAsnProIleSerLeuTrpProLeuProSerHisValSerAlaLeuLysLysIleGl : 59 ||!!. !!:!!.!!:!!|||||| ! !! ! !!! !!!!||| !.!!! euLysSerLeuGlyIleTrpProAlaValLeuAspGluThrAla------GlyPheLe 303225 : TGAAGTCCCTTGGTATTTGGCCAGCCGTGTTGGACGAAACCGCA------GGATTCCT : 303275 60 : nPheLysPheIleArgThrMetGlyTrpPhePheLeuAlaPheLeuIleIleProThr : 78 ! |||.!!! !! ! !:!:.!! !!. !!||| !||| !:!:|||||| ! uProLysIleThrIleGlyLeuSerAsnLeuValLeuLeuPheThrValIleProCys 303276 : ACCAAAAATCACCATTGGACTCAGTAATTTGGTTCTATTATTCACCGTGATACCGTGT : 303332 79 : SerLeuHisThrIleLeuValGlnThrAspProAsnValLysLeuLysMetIleGlyP : 98 ! !||||||! !|||!!!! !|||! !||| !!! :!!!:!||||||:!:.!!|||! IleLeuHisIleIlePheGluGlnLysAspThrIleIleArgLeuLysLeuPheGlyL 303333 : ATTCTACACATAATATTCGAACAAAAGGATACGATAATAAGATTGAAACTATTCGGTC : 303392 99 : roLeuGlyPheCysValMetValIleValLysPhePheValPheValValArgAlaLy : 117 !|||.!!||||||:!!!!: !:!::!!|||!:!!::!.!.!!!.!..!||| ! euLeuSerPheCysLeuIleSerLeuMetLysTyrTrpAlaLeuAlaThrArgLysPr 303393 : TGCTGAGTTTCTGTTTGATCTCGTTGATGAAGTATTGGGCCCTCGCCACGCGGAAACC : 303449 118 : sAsnIleLysIleCysValAspHisValValAlaAspTrpArgAsn >>>> Targe : 133 !!..|||||| !|||:!!!!:.!.||| !::!||||||!:!.!. oArgIleLysGluCysIleGluGluValGlnSerAspTrpLysGlu++ 303450 : AAGGATCAAAGAATGTATAGAAGAGGTGCAAAGTGATTGGAAAGAGgt.......... : 303499 134 : t Intron 1 >>>> ValAsnThrIleGluAspArgGluIleMetIleAspSerAl : 146 938 bp |||.!.:!!:!!..!|||||||||!!:|||:!! ! ! !!. ++ValGluSerLeuArgAspArgGluMetMetLeuLysTyrGl 303500 : ...............agGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATACGG : 304474 147 : aArgIleAlaArgLeuPheThrAlaAlaSerAlaLeuPheMetTyrGlyGlyGlyIle : 165 !!:!!!:!.!||| !.!.||| ! !!!!|||:!!||||||||| !||||||! ! yGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGlyThr 304475 : GCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGCACC : 304531 166 : SerTyrThrIleIleLeuProLeuThrArgSerLysSerLeuSerSerAspAsnValT : 185 ! !||| !! :!!:!!! !!!!.!!! !.!!! !! !:!!..!..! !!||| !| IleTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnArgT 304532 : ATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATCGTA : 304591 186 : hrIleLysValLeuProTyrProCysTyrPhePhePhePheAspProGlnIleSerPr : 204 |||||||| !||| !|||||| !||| ! !!!.|||||| !|||! !||||| hrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSerPr 304592 : CGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAGCCC : 304648 205 : oIleTyrGluLeuIlePheLeuAlaTyrIleLeuCysAsnIleValArgTyrSerThr : 223 |||||||||||||:!!!:!!!!!.!:!! !:!!|||... !|||! !||||||! ! oIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSerIle 304649 : TATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCTATA : 304705 224 : ThrSerGlyValCysSerLeuAlaValValPheAlaMetHisValTyrGlyGlnCysG : 243 |||:!!|||!.!|||.!!||||||!.!:!!||||||! |||!.!! !|||||| !. ThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnIleA 304706 : ACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAATTG : 304765 244 : lnValLeuMetArgLeuLeuAspAspPheValAspGlyGluArgGluLysSerSerTh : 262 !.:!!:!!||| !! !|||! !|||.!!|||:!!.!! :!!:!!|||||| spIleValMetSerArgLeuGlyAspLeuValAsnSer------LysGluSerSerAs 304766 : ATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGC------AAAGAATCATCTGA : 304816 263 : rLeuHisGlnArgLeuAlaAsnValValValArgHisLeuArgIleLeuArg : 279 !||| !!:!!|||||| !.!.:!!|||! !!.!|||||||||||||||||| pLeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIleLeuArg 304817 : TTTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTAAGG : 304869 vulgar: gi|528747946|gb|AGS43068.1| 20 279 . KQ414889.1 303166 304869 + 434 M 34 102 G 2 0 M 76 228 5 0 2 I 0 934 3 0 2 M 123 369 G 2 0 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303167 304869 434 + . gene_id 5 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303167 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303167 303496 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304869 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304869 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 303167 304869 434 + . alignment_id 5 ; Query gi|528747946|gb|AGS43068.1| ; Align 303167 21 102 ; Align 303269 57 228 ; Align 304435 133 369 ; Align 304804 258 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 424 Query range: 5 -> 281 Target range: 212792 -> 213628 6 : SerCysLysArgIleLeuSerThrGluAspLysValGlnThrGluGlnAsnLys---- : 24 !.!|||::!||| ! !!:! !|||!!:|||:!!::!!.! ::!:::|||#### LysCysArgArgCysLysAsnArgGluGluLysMetArgAsnCysArgSerLys#### 212793 : AAGTGTCGACGATGCAAAAACCGGGAGGAAAAGATGAGAAATTGCAGGTCGAAGACTG : 212849 25 : -AsnTyrLysSerAspIleGluTyrAlaLeuLysLeuAsnArgTrpLeuLeuAsnPro : 42 #!.!|||:!!!.! :::... :::::: !! !|||||||||||||||!!.||| #ThrTyrGluLysArgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysPro 212850 : TACCTACGAGAAACGtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCA : 212906 43 : IleSerLeuTrpProLeuProSerHisValSerAlaLeuLysLysIleGlnPheLysP : 62 ! .!!||||||||| ! !|||:!!|||||| !!:!!:!!|||! ! !::!! ThrGlyLeuTrpProAspLysSerTyrValSerProIleGluLysAsnIleAlaArgL 212907 : ACGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGAT : 212966 63 : heIleArgThrMetGlyTrpPhePheLeuAlaPheLeuIleIleProThrSerLeuHi : 81 !.:!!!.!|||:!: !!!:: !!!.:!!!.!!:!|||:!!|||||| !||||||:! euValAsnThrValCysTyrGlyLeuIleGlyTyrLeuValIleProCysSerLeuTy 212967 : TGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTAATACCGTGCAGTTTGTA : 213023 82 : sThrIleLeuValGlnThrAspProAsnValLysLeuLysMetIleGlyProLeuGly : 100 !..!.!!|||! ! ! ::: ::::!!:!!:!!.!!||| !!!!!.! rValPheLeuAspValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheAla 213024 : CGTGTTCCTCGACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTGCA : 213080 101 : PheCysValMetValIleValLysPhePheValPheValValArgAlaLysAsnIleL : 120 ||||||||| !.!:!: !|||!:! ! !!!.:!!:!!!.!!.! ! :!!|||: PheCysValAlaAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleA 213081 : TTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTC : 213140 121 : ysIleCysValAspHisValValAlaAspTrpArgAsnValAsnThrIleGluAspAr : 139 ::! ||||||!!:|||:!! ! !||||||!:!|||:!!!.. ! ||||||!: rgThrCysValGluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLy 213141 : GTACGTGTGTCGAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAA : 213197 140 : gGluIleMetIleAspSerAlaArgIleAlaArgLeuPheThrAlaAlaSerAlaLeu : 158 !||||||||| !:!|||!!!.!!!.!!:! !.!...!.!! !!!!|||!!! sGluIleMetAlaLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPhe 213198 : AGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTC : 213254 159 : PheMetTyrGlyGlyGlyIleSerTyrThrIleIleLeuProLeuThrArgSerLysS : 178 ||||||||| !||| !! ! !||| !:!!:!!:!!|||:!!!:! !..!|||! PheMetTyrThrGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLysM 213255 : TTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAA : 213314 179 : erLeuSerSerAsp<->AsnValThrIleLysValLeuProTyrProCysTyrPhePh : 196 !:!!:!!..!||| |||||||||.!!!:! !:!! ! !||| !! || etValAlaGluAspLeuAsnValThrPheArgGlnMetValValProValSerArgPh 213315 : TGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATT : 213371 197 : ePhePheAspProGlnIleSerProIleTyrGluLeuIlePheLeuAlaTyrIleLeu : 215 |.!! !!||| !!:! !||||||:!: !!|||:!!.!!|||||| ! ! |||:!! eIleValAspValArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleIle 213372 : TATCGTCGATGTTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATA : 213428 216 : CysAsnIleValArgTyrSerThrThrSerGlyValCysSerLeuAlaValValPheA : 235 ..!...:!!:!!! !:!!:!!! !.!! !! !!.!||||||||||||!.!||||||| AlaGlyValLeuIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPheA 213429 : GCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTG : 213488 236 : laMetHisValTyrGlyGlnCysGlnValLeuMetArgLeuLeuAspAspPheValAs : 254 ||:!:|||!.!! !|||||| :!!||||||!!!! !|||!!: !!!!.:!!|| laValHisAlaCysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAs 213489 : CGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGA : 213545 255 : pGlyGluArgGluLysSerSerThrLeuHisGlnArgLeuAlaAsnValValValArg : 273 ||||..!..!!!:! !|||!.!!.!:!! !!.!.|||:!!||| !:!!||| !!:! pGlyArgGluAspMetSerLysAsnValAspAspArgIleAlaValIleValAsnGln 213546 : CGGTAGAGAGGATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAG : 213602 274 : HisLeuArgIleLeuArgLeuIle : 281 |||:!!|||||||||!:!! !:!: HisValArgIleLeuLysTrpVal 213603 : CATGTGCGGATACTGAAGTGGGTG : 213628 vulgar: gi|528747946|gb|AGS43068.1| 5 281 . KQ414889.1 212792 213628 + 424 M 18 54 F 0 5 M 159 477 G 0 3 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212793 213628 424 + . gene_id 6 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212793 213628 . + . KQ414889.1 exonerate:protein2genome:local exon 212793 213628 . + . insertions 3 ; deletions 0 ; frameshifts 5 KQ414889.1 exonerate:protein2genome:local similarity 212793 213628 424 + . alignment_id 6 ; Query gi|528747946|gb|AGS43068.1| ; Align 212793 6 54 ; Align 212852 24 477 ; Align 213332 183 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 384 Query range: 23 -> 279 Target range: 274362 -> 275136 24 : AsnTyrLysSerAspIleGluTyrAlaLeuLysLeuAsnArgTrpLeuLeuAsnProI : 43 |||!:! ! ||| !! !!!:|||::!|||:!!||||||||||||!!!|||!!.|||| AsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 274363 : AATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTA : 274420 44 : leSerLeuTrpProLeuProSerHisValSerAlaLeuLysLysIleGlnPheLysPh : 62 ||.!! !||||||||| !!|||! !..!!!! !!!!:!!::!|||! ! ! .. leGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLeuSerHisLe 274421 : TAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCt : 274477 63 : eIleArgThrMetGlyTrpPhePheLeuAlaPheLeuIleIleProThrSerLeuHis : 81 .::: ::: :::! !|||:!! !! ! !:!!||||||!:!! !!!!||| uLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIlePheHis 274478 : tttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCAC : 274534 82 : ThrIleLeuValGlnThrAspProAsnValLysLeuLysMetIleGlyProLeuGlyP : 101 ! !|||||||||.!. !..!! !:!!:!!|||||||||:!!:!!|||||||||||| IleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyH 274535 : ATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTC : 274594 102 : heCysValMetValIleValLysPhePheValPheValValArgAlaLysAsnIleLy : 120 !!! !!!!:! ! !:!!!!.!:! !..!.!.:!!:!!|||::!|||.!.|||:: isTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleAr 274595 : ACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACG : 274651 121 : sIleCysValAspHisValValAlaAspTrpArgAsnValAsnThrIleGluAspArg : 139 : !||||||!!:|||:!! !.!!|||||||||! !|||!.!! ! ||||||!:! gGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAspGln 274652 : CGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAA : 274708 140 : GluIleMetIleAspSerAlaArgIleAlaArgLeuPheThrAlaAlaSerAlaLeuP : 159 :!!:!:|||:!: ! !:!|||!:!|||!.!|||! ! !!.!! ! !!!!||| !| GlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaP 274709 : CAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGT : 274768 160 : heMetTyrGlyGlyGlyIleSerTyrThrIleIleLeuProLeuThr<->ArgSerLy : 177 ||||| ! !!|||! !:!!!!!||| !:!:||| ! !!!!!||| !:!!!! heMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGlnThrVa 274769 : TCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGT : 274825 178 : sSerLeuSerSerAspAsnValThrIleLysValLeuProTyrProCysTyrPhePhe : 196 ..!:!!.!!!:!!!:!.! !|||:!: ! :!!||||||! ! !..!||| lGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLysLys 274826 : TCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAG : 274882 197 : PhePheAspProGlnIleSerProIleTyrGluLeuIlePheLeuAlaTyrIleLeuC : 216 .!! !!! !.!.! ||||||! !!|||:!!:!!.!! !:!! ! .!!:!!! IleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnPheValS 274883 : ATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGT : 274942 217 : ysAsnIleValArgTyrSerThrThrSerGlyValCysSerLeuAlaValValPheAl : 235 ....!!:!! ! !!|||!:!.!! !|||!.!! !|||||||||!.!|||||||| erGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAl 274943 : CGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGC : 274999 236 : aMetHisValTyrGlyGlnCysGlnValLeuMetArgLeuLeuAspAspPheValAsp : 254 | |||!.!|||||||||! ...|||||||||! !! !:!! !!!:||||||:!! aAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheValAsn 275000 : GGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAAT : 275056 255 : GlyGluArgGluLysSerSerThrLeuHis<->GlnArgLeuAlaAsnValValValA : 273 !...|||!!:::::::......:::::: .....!:!!!.! ||||||! !! HisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValValValGluH 275057 : CATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAAC : 275116 274 : rgHisLeuArgIleLeuArg : 279 .!|||||||||:!!|||||| isHisLeuArgValLeuArg 275117 : ATCATCTGAGGGTACTCAGG : 275136 vulgar: gi|528747946|gb|AGS43068.1| 23 279 . KQ414889.1 274362 275136 + 384 M 151 453 G 0 3 M 90 270 G 0 3 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274363 275136 384 + . gene_id 7 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274363 275136 . + . KQ414889.1 exonerate:protein2genome:local exon 274363 275136 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274363 275136 384 + . alignment_id 7 ; Query gi|528747946|gb|AGS43068.1| ; Align 274363 24 453 ; Align 274819 175 270 ; Align 275092 265 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 377 Query range: 25 -> 279 Target range: 204221 -> 204980 26 : LysSerAspIleGluTyrAlaLeuLysLeuAsnArgTrpLeuLeuAsnProIleSerL : 45 :!!..!|||:!:..!|||||| !:::!!! !:! !:!!|||... !:!!.!! GluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyA 204222 : GAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTG : 204279 46 : euTrpProLeuProSerHisValSerAlaLeuLysLysIleGlnPheLysPheIleAr : 64 !||||||:!!||| !:!! !||| !!!!!! !!:!:!! ! ::!.!. !!. laTrpProIleProValAsnSerSerProPheThrArgLeuValArgArgIleGluHi 204280 : CGTGGCCGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACA : 204336 65 : gThrMetGlyTrpPhePheLeuAlaPheLeuIleIleProThrSerLeuHisThrIle : 83 !..!:!: !:::|||...... ...:!!|||:!!||| ! !|||:!!..!.!! sValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPhe 204337 : CGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTC : 204393 84 : LeuValGlnThrAspProAsnValLysLeuLysMetIleGlyProLeuGlyPheCysV : 103 ||| !:!!! !:!! !!!.:!!:::||||||!!::!!||||||:!!! ! !||| LeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysS 204394 : CTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCA : 204453 104 : alMetValIleValLysPhePheValPheValValArgAlaLysAsnIleLysIleCy : 122 !!!: !.!! !!|||!:!! !|||.!!:!! !||| ! ! !!.|||:!!! ! erIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSe 204454 : GCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAG : 204510 123 : sValAspHisValValAlaAspTrpArgAsnValAsnThrIleGluAspArgGluIle : 141 !:!!:!! !:!! ! !||||||! !.!.!.! ||| !|||:!!||| !||| rLeuAsnThrIleArgArgAspTrpIleGluAla---ThrAspGluAsnArgLeuIle 204511 : TTTGAACACCATCAGACGCGACTGGATAGAGGCT---ACGGATGAAAATCGGTTGATT : 204564 142 : MetIleAspSerAlaArgIleAlaArgLeuPheThrAlaAlaSerAlaLeuPheMetT : 161 .!. !...!.!|||!:!|||!.!||| ! ! ! ! !:!!||| ! !|||| PheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetT 204565 : TTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGT : 204624 162 : yrGlyGlyGlyIleSerTyrThrIleIleLeuProLeuThrArgSerLysSerLeuSe : 180 |||||||||||:!:!!!|||! !! |||||||||||| !|||.!!! !! !:!!!! yrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleValTh 204625 : ACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTAAC : 204681 181 : rSerAspAsnValThrIleLysValLeuProTyrProCysTyrPhePhePhePheAsp : 199 ! !!|||||||||||||||!:! !||||||! !||| !|||||| ||||||::: rProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePheAsn 204682 : ACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaac : 204738 200 : ProGlnIleSerProIleTyrGluLeuIlePheLeuAlaTyrIleLeuCysAsnIleV : 219 !||| !||||||! !||||||:!!:!!|||:!! ! ! |||:!!..!..!.!!| GluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheV 204739 : GAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTG : 204798 220 : alArgTyrSerThrThrSerGlyValCysSerLeuAlaValValPheAlaMetHisVa : 238 ||! !|||:!!..!! !||||||..!|||.!!:!!..!!.!:!!|||!.!:!:|||!. alThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAl 204799 : TTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGC : 204855 239 : lTyrGlyGlnCysGlnValLeuMetArgLeuLeuAspAspPheValAspGlyGluArg : 257 !! !.!!..! ::!:!!|||:!!!.! !:!!:!!! .!!|||||| !! ! ! aCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAlaAsp 204856 : GTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCGGAC : 204912 258 : GluLysSerSerThrLeuHisGlnArgLeuAlaAsnValValValArgHisLeuArgI : 277 !! ..!!!! !:!!|||::!!:!:!!|||:!!:!!|||! ! !!!. !!:!| MetThrGluThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrLysI 204913 : ATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGAAGA : 204972 278 : leLeuArg : 279 || !||| leLysArg 204973 : TAAAGAGG : 204980 vulgar: gi|528747946|gb|AGS43068.1| 25 279 . KQ414889.1 204221 204980 + 377 M 108 324 G 1 0 M 145 435 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204222 204980 377 + . gene_id 8 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204222 204980 . + . KQ414889.1 exonerate:protein2genome:local exon 204222 204980 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 204222 204980 377 + . alignment_id 8 ; Query gi|528747946|gb|AGS43068.1| ; Align 204222 26 324 ; Align 204546 135 435 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 375 Query range: 21 -> 294 Target range: 226903 -> 227725 22 : AsnLysAsnTyrLysSerAspIleGluTyrAlaLeuLysLeuAsnArgTrpLeuLeuA : 41 .!.!!.:!!|||:!!..! !!:!:.!. ::!:!!:!!||||||||||||||||||! GluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuL 226904 : GAGAACGACTATCAGGAATACTTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGA : 226961 42 : snProIleSerLeuTrpProLeuProSerHisValSerAlaLeuLysLysIleGlnPh : 60 !.|||:!!.!!:!!||||||! ! !! !! ! !||| !:!! !!:! ! ! ysProLeuGlyIleTrpProSerSerArgLysSerSerArgIleGlyArgCysPheSe 226962 : AACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTC : 227018 61 : eLysPheIleArgThrMetGlyTrpPhePheLeuAlaPheLeuIleIleProThrSer : 79 ! !!!.!!: !! !:!: !!!:: .!.:!!::!||| !:!::!! !!!:!.!! rTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSerPheGluLeuValSerSerGly 227019 : CTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGC : 227075 80 : LeuHisThrIleLeuValGlnThrAspProAsnValLysLeuLysMetIleGlyProL : 99 |||:!!..!:!!|||! ! !! !! ! !! !! !! !||||||||||||||||||: LeuTyrValValLeuGluValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProM 227076 : TTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGA : 227135 100 : euGlyPheCysValMetValIleValLysPhePheValPheValValArgAlaLysAs : 118 !!..!|||! !!.!||| !:!!:!!|||!:!! !:!!!!...! !!!.!! ! ! :! etSerPhePheAlaMetSerLeuLeuLysTyrSerMetLeuThrPheHisGluAspAs 227136 : TGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGA : 227192 119 : nIleLysIleCysValAspHisValValAlaAspTrpArgAsnValAsnThrIleGlu : 137 !||| ||||||!!:!..:!! ! !||||||!:!|||:!!!.. !:!:||| pIleLeuGluCysValGluArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGlu 227193 : CATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAG : 227249 138 : AspArgGluIleMetIleAspSerAlaArgIleAlaArgLeuPheThrAlaAlaSerA : 157 ||||||.!.:!:|||:!: ! !||| ! !!.!||| !!!.! !.!! !!!!. AspArgAsnValMetValThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysT 227250 : GACAGAAACGTGATGGTGACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCA : 227309 158 : laLeuPheMetTyrGlyGlyGlyIleSerTyrThrIleIleLeuProLeuThrArgSe : 176 !!!!!|||:!:!:!...... ::: ::: |||:!!:!!|||:!!!.! !.! hrPhePheValPheSerSerPheValPhePheTyrIleValValProIleAsnAlaGl 227310 : CGTTTTTCGTCTTCAgtagtttcgtatttttctacATCGTCGTACCTATCAACGCCGG : 227366 177 : rLysSerLeuSerSerAsp<->AsnValThrIleLysValLeuProTyrProCysTyr : 194 !!.. ! !!!!..!||| ||| !!:! !! !:!!|||!:!|||! ! ySerValAlaThrGluAspGlyAsnHisSerTyrIleGlnMetProPheProPhePro 227367 : AAGTGTTGCAACGGAGGACGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCA : 227423 195 : PhePhePhePheAspProGlnIleSerProIleTyrGluLeuIlePheLeuAlaTyrI : 214 .!!.!! !||| !!:: !||||||.!! !!|||:!!.!!|||! !!.! ! . LysIleIleAlaAspValArgTyrSerProPheAsnGluIlePhePheSerValGlnP 227424 : AAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAAT : 227483 215 : leLeuCysAsnIleValArgTyrSerThrThrSerGlyValCysSerLeuAlaValVa : 233 !!:!! ..!|||||| !:!!.!!..!||||||!.!!.!||||||:!!|||!.!:! heValThrGlyIleValLeuHisGlyValThrSerAlaAlaCysSerMetAlaAlaLe 227484 : TTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCT : 227540 234 : lPheAlaMetHisValTyrGlyGlnCysGlnValLeuMetArgLeuLeuAspAspPhe : 252 !.!!|||:!:|||!.!! !|||||| :!!||||||:!! !! !|||! !!!!. uLeuAlaValHisAlaCysGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeu 227541 : GCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTG : 227597 253 : ValAspGlyGluArgGluLysSerSerThrLeuHisGlnArgLeuAlaAsnValValV : 272 :!!||||||..! !!!:! !|||!.!|||||| !!.!.|||:!!|||!:!:!!|||. IleAspGlyArgAlaAspMetSerLysThrLeuAspAspArgIleAlaSerIleValT 227598 : ATCGACGGCAGAGCGGATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCA : 227657 273 : alArgHisLeuArgIleLeuArgLeuIleSerThrMetGluAsnIlePheAsnGluIl : 291 .!!.!|||:!!|||||||||!:!! !:!!!!! !!!: ! :!:!:!..!!!: hrHisHisValArgIleLeuLysCysValThrCysIleTyrLeuLeuTyrArgAsp** 227658 : CTCACCACGTTCGAATATTGAAGTGTGTAACGTGTATCTATTTGTTGTATCGTGATTA : 227714 292 : ePheLeuIle : 294 !||||||::: *PheLeuLeu 227715 : ATTTCTcttg : 227725 vulgar: gi|528747946|gb|AGS43068.1| 21 294 . KQ414889.1 226903 227725 + 375 M 161 483 G 0 3 M 112 336 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226904 227725 375 + . gene_id 9 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226904 227725 . + . KQ414889.1 exonerate:protein2genome:local exon 226904 227725 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226904 227725 375 + . alignment_id 9 ; Query gi|528747946|gb|AGS43068.1| ; Align 226904 22 483 ; Align 227390 183 336 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 346 Query range: 23 -> 279 Target range: 266616 -> 267390 24 : AsnTyrLysSerAspIleGluTyrAlaLeuLysLeuAsnArgTrpLeuLeuAsnProI : 43 ||| !!.||| ! !!!:|||::!|||:!!||||||||||||!!!|||!!.|||| AsnLeuAsnSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 266617 : AATCTAAACAGTCTGAGCGATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTA : 266674 44 : leSerLeuTrpProLeuProSerHisValSerAlaLeuLysLysIleGlnPheLysPh : 62 ||.!! !||||||! ! !|||! !..!||| !|||:!!::!||| ! ! ! leGlyAlaTrpProProLeuSerLeuThrSerLysLeuGluArgIleValSerTyrAl 266675 : TAGGCGCTTGGCCGCCGTTGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGC : 266731 63 : eIleArgThrMetGlyTrpPhePheLeuAlaPheLeuIleIleProThrSerLeuHis : 81 !:!:! !..!!!: !!!::! !! !:!! !||| !:!!|||||| !! !!!!||| aLeuIleValIleCysTyrCysSerIleLeuPheThrValIleProCysLeuPheHis 266732 : TTTGATCGTCATCTGCTACTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCAT : 266788 82 : ThrIleLeuValGlnThrAspProAsnValLysLeuLysMetIleGlyProLeuGlyP : 101 !:!!|||! !.!. !..! !..!..!|||:!!|||:!!.!!|||||||||.!! LeuValLeuGluAspGluSerIleArgThrLysValLysValPheGlyProLeuSerH 266789 : CTCGTTCTGGAGGACGAGAGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCC : 266848 102 : heCysValMetValIleValLysPhePheValPheValValArgAlaLysAsnIleLy : 120 !!! !!:!:! ! !:!!!!.!:! !..!.!.:!!:!!|||::!|||.!.|||:: isTrpPheValGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleAr 266849 : ATTGGTTCGTCGGAGGAATTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACG : 266905 121 : sIleCysValAspHisValValAlaAspTrpArgAsnValAsnThrIleGluAspArg : 139 : !||||||!!:|||:!! !.!!|||||||||! !|||!.!! ! ||||||!:! gGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAspLys 266906 : CGGTTGCGTAGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAG : 266962 140 : GluIleMetIleAspSerAlaArgIleAlaArgLeuPheThrAlaAlaSerAlaLeuP : 159 :!!:!:|||:!: ! !:!|||||||||!.!|||! !.!!.!! ! !!!!||| !| GlnValMetLeuLysAsnAlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaP 266963 : CAGGTGATGTTGAAGAACGCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGT : 267022 160 : heMetTyrGlyGlyGlyIleSerTyrThrIleIleLeuProLeuThr<->ArgSerLy : 177 ||||| ! !!|||! !:!!.!!||| !:!:||| ! !!!!!||| !:!!!! heMetGlnCysGlyValLeuGlyTyrCysValIleThrAlaPheThrMetGlnThrVa 267023 : TCATGCAATGCGGTGTTCTCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGT : 267079 178 : sSerLeuSerSerAspAsnValThrIleLysValLeuProTyrProCysTyrPhePhe : 196 !..!:!!.!!!:!!!:!.! !! !:!! ! :!!||||||! ! !! !||| lGluValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaValTyrLysLys 267080 : GGAAGTCGGTAACGAGACTAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAG : 267136 197 : PhePheAspProGlnIleSerProIleTyrGluLeuIlePheLeuAlaTyrIleLeuC : 216 .!..!!! !.!.! !||||||! !!|||:!!:!!.!!:!!:!! ! .!!:!!! MetIleAlaValAspThrSerProThrAsnGluIleValLeuValSerGlnPheValS 267137 : ATGATCGCAGTTGATACCAGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTAT : 267196 217 : ysAsnIleValArgTyrSerThrThrSerGlyValCysSerLeuAlaValValPheAl : 235 ....!!:!! ! !!|||!:!..! !|||!.!! !|||||||||!.!|||||||| erGlyPheIleValAsnSerSerValValGlyAlaPheSerLeuAlaAlaValPheAl 267197 : CAGGATTCATCGTGAATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGC : 267253 236 : aMetHisValTyrGlyGlnCysGlnValLeuMetArgLeuLeuAspAspPheValAsp : 254 | |||!.!! !|||||| ...|||||||||! !! !:!! ! !!:||||||:!! aAlaHisAlaCysGlyGlnLeuSerValLeuMetMetTrpIleLysGluPheValAsn 267254 : GGCTCACGCGTGCGGACAGCTGAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAAC : 267310 255 : GlyGluArgGluLysSerSerThrLeu<->HisGlnArgLeuAlaAsnValValValA : 273 !!...|||!!:!..!:!!.!!.!:!! !.!.!:!:!!!.! ||||||! !! ArgSerArgAspSerAsnLysAsnValCysPheAspLysIleGlyValValValGluH 267311 : CGATCCAGAGATAGCAATAAGAACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAAC : 267370 274 : rgHisLeuArgIleLeuArg : 279 .!|||||||||:!!|||||| isHisLeuArgValLeuArg 267371 : ATCATCTGAGAGTTTTGAGG : 267390 vulgar: gi|528747946|gb|AGS43068.1| 23 279 . KQ414889.1 266616 267390 + 346 M 151 453 G 0 3 M 89 267 G 0 3 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266617 267390 346 + . gene_id 10 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266617 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266617 267390 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266617 267390 346 + . alignment_id 10 ; Query gi|528747946|gb|AGS43068.1| ; Align 266617 24 453 ; Align 267073 175 267 ; Align 267343 264 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 339 Query range: 16 -> 279 Target range: 262807 -> 263602 17 : ValGlnThrGluGlnAsnLysAsnTyrLysSerAspIleGluTyrAlaLeuLysLeuA : 36 ..!..!|||!!:.!. :!!!:!!:! ||| !! !!!:|||::!|||:!!:!!| ThrMetThrAspAspLeuGluSerPheGlySerLeuSerAspTyrSerLeuGlnIleA 262808 : ACGATGACCGACGACCTGGAAAGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAA : 262865 37 : snArgTrpLeuLeuAsnProIleSerLeuTrpProLeuProSerHisValSerAlaLe : 55 ||||||||||||||!!.||||||.!! !||||||||| !!:!! :!!||| !:! snArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerAlaSerIleSerArgMe 262866 : ACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAAT : 262922 56 : uLysLysIleGlnPheLysPheIleArgThrMetGlyTrpPhePheLeuAlaPheLeu : 74 !:!!::!||| !:: .!!:!!! !..!:!: !!!::! !.!!:!! !! ! ! tGluArgIleIleTrpPheLeuLeuIleValValCysTyrCysLeuIleLeuSerThr 262923 : GGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACC : 262979 75 : IleIleProThrSerLeuHisThrIleLeuValGlnThrAspProAsnValLysLeuL : 94 :!!||||||:!!! !||||||! !:!!|||! ! !:!! !:!!:!!||||||: ValIleProSerIleLeuHisIleValLeuGluAlaGluAsnPheHisMetLysLeuG 262980 : GTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGC : 263039 95 : ysMetIleGlyProLeuGlyPheCysValMetValIleValLysPhePheValPheVa : 113 !!:!::!!|||||||||||| !! !!:!:! !!!::!!!!.!:! ! !!!.:! lnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLe 263040 : AGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTT : 263096 114 : lValArgAlaLysAsnIleLysIleCysValAspHisValValAlaAspTrpArgAsn : 132 !:!!!.!::!|||:!!|||:!! !||||||.!.|||||| !! !|||||| !!! ! uLeuHisSerLysAspIleGlnGlyCysValGlnHisValGlnGluAspTrpCysIle 263097 : GCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATC : 263153 133 : ValAsnThrIleGluAspArgGluIleMetIleAspSerAlaArgIleAlaArgLeuP : 152 |||!.!! !:!:||||||!:!...||||||:!: ! !:!|||!:! !!.!|||! ! ValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrV 263154 : GTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACG : 263213 153 : heThrAlaAlaSerAlaLeuPheMetTyrGlyGlyGlyIleSerTyrThrIleIleLe : 171 ! .!!|||:!!!!!|||:!!|||||| ! !.!! !!!:!!! ! !:!!:!! alAlaAlaSerCysAlaIlePheMetGlnThrSerIleMetCysLysCysLeuValTh 263214 : TGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCAC : 263270 172 : uProLeuThrArgSerLysSerLeuSerSerAspAsnValThrIle<->LysValLeu : 189 ! !!!!!|||! !..! !! ! !..!.!!:!!.!...!! !||| ::::!!||| rAlaPheThrThrGlnValIleGluAspGlyAsnGluThrArgIleLeuArgMetLeu 263271 : AGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTA : 263327 190 : ProTyrProCysTyrPhePhePhePheAspProGlnIleSerProIleTyrGluLeuI : 209 |||! !||| ||| .!!.!! !.!.! !:!|||! !!|||:!!. ProCysProValTyrLysGluIleIleProValAspThrAsnProThrAsnGluIleP 263328 : CCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCT : 263387 210 : lePheLeuAlaTyrIleLeuCysAsnIleValArgTyrSerThrThrSerGlyValCy : 228 !!.!! !.!! ! .!!|||! ..!.!!:!! ! !:!!|||||| !|||!.!! heLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaThrThrValGlyAlaPh 263388 : TTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTT : 263444 229 : sSerLeuAlaValValPheAlaMetHisValTyrGlyGlnCysGlnValLeuMetArg : 247 !.!!:!!.!!!.!||||||||| |||!.!! !||||||! .!.||||||||| ! eGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSer 263445 : CGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCC : 263501 248 : LeuLeuAspAspPheValAspGlyGluArgGluLysSerSerThrLeuHis<->GlnA : 266 ! !:!! !!:||||||:!! !...|||!!::!!!:!!.!!.!|||:!! . TrpIleThrGluPheValAsnGlnSerArgAspGluAsnLysAsnLeuTyrPheThrG 263502 : TGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCG : 263561 267 : rgLeuAlaAsnValValValArgHisLeuArgIleLeuArg : 279 .!:!!!.! :!!|||! !!.!|||||||||:!!|||||| luIleGlyValIleValGluHisHisLeuArgValLeuArg 263562 : AGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTGAGG : 263602 vulgar: gi|528747946|gb|AGS43068.1| 16 279 . KQ414889.1 262807 263602 + 339 M 170 510 G 0 3 M 78 234 G 0 3 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262808 263602 339 + . gene_id 11 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262808 263602 . + . KQ414889.1 exonerate:protein2genome:local exon 262808 263602 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262808 263602 339 + . alignment_id 11 ; Query gi|528747946|gb|AGS43068.1| ; Align 262808 17 510 ; Align 263321 187 234 ; Align 263558 265 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 329 Query range: 15 -> 250 Target range: 194126 -> 194825 16 : LysValGlnThrGluGlnAsnLysAsnTyrLysSerAspIleGluTyrAlaLeuLysL : 35 ||| ...!.! ! !::||| |||||||||! !|||! !|||||||||:!!::!: LysLysSerAsnTyrArgAsnValAsnTyrLysLeuAspThrGluTyrAlaValArgV 194127 : aagaaatcgAATTACCGCAACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAG : 194184 36 : euAsnArgTrpLeuLeuAsnProIleSerLeuTrpProLeuProSerHisValSerAl : 54 !! !:! !||||||!..||||||.!!:!!|||||| ! !..! ||| alAlaLysAlaLeuLeuThrProIleGlyIleTrpProArgGluAsp------SerLe 194185 : TAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAAGGGAGGAT------TCTCT : 194235 55 : aLeuLysLysIleGlnPheLysPheIleArgThrMetGlyTrpPhePheLeuAlaPhe : 73 !! ! ! !:!:!!!:!.!. ! !! ! !:!!! !!:: !!!.:!!..!||| uArgAspArgValArgLeuPheAlaGlnThrGlyValValPheAlaLeuMetCysPhe 194236 : TCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTTCGCTTTGATGTGCTTT : 194292 74 : LeuIleIleProThrSerLeuHisThrIleLeuValGlnThrAspProAsnValLysL : 93 |||:!::!!||| ! !:!!:!!||| !!!!! ! !|||! !!.. ! ! : LeuLeuValProHisValIleTyrThrTyrPheAspCysGluAspLeuThrArgTyrM 194293 : CTACTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAGGATCTGACGAGGTACA : 194352 94 : euLysMetIleGlyProLeuGlyPheCysValMetValIleValLysPhePheValPh : 112 !!|||:!:|||!.! !!! !! !||| !!:!!:!!!.!|||:!!||||||!::..!.! etLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleIleLysPheTrpThrMe 194353 : TGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGAT : 194409 113 : eValValArgAlaLysAsnIleLysIleCysValAspHisValValAlaAspTrpArg : 131 .:!!|||!.! !|||.!.|||!:!.!!|||:!! .!.:!!! !.!!.!.!::||| tIleValAsnArgLysGluIleArgPheCysLeuLeuGluMetGluThrGlnTyrArg 194410 : GATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGA : 194466 132 : AsnValAsnThrIleGluAspArgGluIleMetIleAspSerAlaArgIleAlaArgL : 151 :!!|||.!. ! |||||||||:!!:!:|||! :!!!!!|||!:!|||!.!|||! AspValGluCysGluGluAspArgGlnValMetThrAsnCysAlaLysIleGlyArgP 194467 : GACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGCGCGAAAATCGGCCGAT : 194526 152 : euPheThrAlaAlaSerAlaLeuPheMetTyrGlyGlyGlyIleSerTyrThrIleIl : 170 !!||||||.!! !! ! ! !.!! |||||||||!.!:!: !!||| !||||| hePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIl 194527 : TTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTTTGCCGTACCACATTAT : 194583 171 : eLeuProLeuThrArgSerLysSerLeuSerSerAspAsnValThrIleLysValLeu : 189 ||||||||||! ! !..!!:!! !:!!!.!..!|||||| !||| ! ! !||| eLeuProLeuMetSerGluArgIleValLysGluAspAsnSerThrGlnIleProLeu 194584 : TCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAACAGTACTCAGATACCTCTG : 194640 190 : ProTyrProCysTyrPhePhePhePheAspProGlnIleSerProIleTyrGluLeuI : 209 |||||| ! !! !!!:! !!||||||! !:!! !|||||||||||||||:!!! ProTyrLeuSerAsnTyrValPhePheAlaIleGluAspSerProIleTyrGluIleT 194641 : CCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTA : 194700 210 : lePheLeuAlaTyrIleLeuCysAsnIleValArgTyrSerThrThrSerGlyValCy : 228 !|||:!!:!! ! |||||| !!:!! !:!!! !! ||||||!.!!!!|||:!!! hrPheValSerGlnIleLeuIleSerSerIleIleLeuSerThrAsnCysGlyIleTy 194701 : CATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGTCGACGAATTGTGGGATTTA : 194757 229 : sSerLeuAlaValValPheAlaMetHisValTyrGlyGlnCysGlnValLeuMetArg : 247 !||||||!.!!.!..!.!! !|||||| !! !||| !! !:!!||| !! ||| rSerLeuValAlaThrIleIleMetHisCysCysGlyLeuPheGluValThrSerArg 194758 : TAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGA : 194814 248 : LeuLeuAsp : 250 !:!!!!: ArgMetGlu 194815 : AGGATGGAG : 194825 vulgar: gi|528747946|gb|AGS43068.1| 15 250 . KQ414889.1 194126 194825 + 329 M 35 105 G 2 0 M 198 594 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194127 194825 329 + . gene_id 12 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194127 194825 . + . KQ414889.1 exonerate:protein2genome:local exon 194127 194825 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 194127 194825 329 + . alignment_id 12 ; Query gi|528747946|gb|AGS43068.1| ; Align 194127 16 105 ; Align 194232 53 594 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 282 Query range: 23 -> 306 Target range: 236831 -> 238501 24 : AsnTyrLysSerAspIleGluTyrAlaLeuLysLeuAsnArgTrpLeuLeuAsnProI : 43 ||| ! :!!..!! !!!:|||::!|||:!!! !||||||||| !:!!!!. !| AsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerI 236832 : AATATAACTGCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCA : 236889 44 : leSerLeuTrpProLeuProSerHisValSerAlaLeuLysLysIleGlnPheLysPh : 62 ||.!! !||||||! ! !||| ||| !|||:!!!:!! ! ! !::!.! leGlyThrTrpProGlnPheSer------SerAsnLeuGluArgAsnIleSerArgIl 236890 : TAGGCACATGGCCACAGTTCTCG------TCGAACCTCGAGAGAAACATCTCTCGAAT : 236940 63 : eIleArgThrMetGlyTrpPhePheLeuAlaPheLeuIleIleProThrSerLeuHis : 81 .:!!!.!..!!!: !!!:: ! :!! !|||! !||||||||| !||||||||| eLeuAsnValIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHis 236941 : ATTAAACGTGATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCAC : 236997 82 : ThrIleLeuValGlnThrAspProAsnValLysLeuLysMetIleGlyProLeuGlyP : 101 !!!:|||! !:!! ! ! ! !!..!|||:!!|||!!::!!||| !!|||.!! LeuMetLeuGluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuSerH 236998 : CTAATGCTGGAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCC : 237057 102 : heCysValMetValIleValLysPhePheValPheValValArgAlaLysAsnIleLy : 120 !!! |||.!. !|||:!!!..!:! !:!!.!.:!!:!!||| !|||!.!|||:: isTrpValPheCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleAr 237058 : ACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACG : 237114 121 : sIleCysValAspHisValValAlaAspTrpArgAsnValAsnThrIleGluAspArg : 139 : !! ! !!:!!|||:!!! !.!!|||||||||!....!... ||| ::: gHisPhePheAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLys 237115 : TCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaa : 237171 140 : GluIleMetIleAspSerAlaArgIleAlaArgLeuPheThrAlaAlaSerAlaLeuP : 159 |||:::|||:!: ! ! !|||!:!.!!::!|||! ! .!! !:!!!!!.!!:!!| GluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIleP 237172 : gaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCT : 237231 160 : heMetTyrGlyGlyGlyIleSerTyrThrIleIleLeuProLeuThrArgSerLysSe : 178 ||!!::!!|||||| !:!!.!!||| !:!!!!: ! !!! !|||! !! ! heIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaSerThrThrMetValVa 237232 : TCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGT : 237288 179 : rLeuSerSerAspAsnValThrIle<->LysValLeuProTyrProCysTyrPhePhe : 196 !:!! !.!!:!!!!...!|||||| :::|||||||||! ||| ||| lValValGlyAsnLysThrThrIleLeuArgValLeuProLeuProMetTyrLysGly 237289 : CGTGGTTGGAAACAAGACTACGATCTTGCGCGTGCTGCCCTTACCAATGTACAAAGGG : 237345 197 : PhePheAspProGlnIleSerProIleTyrGluLeuIlePheLeuAlaTyrIleLeuC : 216 .!!.!! !.!.! !:! !!!!: !!!!::!!:!! !!|||:!! ! .!!|||! LeuLeuProValAspThrAsnThrMetAsnAspIleValValLeuSerGlnPheLeuS 237346 : CTCCTTCCAGTCGATACGAATACTATGAACGACATCGTTGTTTTGTCACAATTTCTCT : 237405 217 : ysAsnIleValArgTyrSerThrThrSerGlyValCysSerLeuAlaValValPheAl : 235 !....!!:!! ! !!!:!!:!.!!! !.!!||| ||||||.!! !!.!.!..! erGlyPheIleAlaAsnAsnSerAlaIleSerValIleSerLeuThrSerAlaLeuTh 237406 : CCGGATTTATAGCGAACAACAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAAC : 237462 236 : aMetHisValTyrGlyGlnCysGlnValLeuMetArgLeuLeuAspAspPheValAsp : 254 ! |||!.!! !||||||! ...|||:!!||| !! !:!!!!:|||||||||..! rSerHisAlaSerGlyGlnLeuSerValValMetLeuSerIleGluAspPheValSer 237463 : ATCACACGCGTCTGGCCAGTTGAGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGT : 237519 255 : GlyGluArgGluLysSerSerThrLeuHis<->GlnArgLeuAlaAsnValValValA : 273 ! !! !|||...!:!.!!!.! ! !||| .!...!:!! !!!..:!!|||! !. GluAlaArgArgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluG 237520 : GAAGCGAGACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGG : 237579 274 : rgHisLeuArgIleLeuArgLeuIleSerThrMetGluAsnIlePheAsnGlu{I} : 291 .!|||||||||:!:|||!:!! !:!!!!! !:!!!!: |||!!. !{:} luHisLeuArgValLeuLys***ValCysLeuLeuAspLeuIleLeuLeuMet{V}++ 237580 : AACATTTGAGAGTGTTGAAGTAAGTATGTTTGTTGGATTTGATTTTGCTGATG{G}gt : 237634 292 : >>>> Target Intron 1 >>>> {le}PheLeuIleGluValValGlyCysThr : 300 821 bp {!!} |||:!!! :!!|||..! !||| -+{al}AlaLeuValAlaIleValSerAsnThr 237635 : .........................tg{TA}GCACTCGTTGCTATTGTTTCTAATACA : 238481 301 : PheIleLeuCysPheLeu : 306 ||||||||||||!:!:!! PheIleLeuCysTyrIle 238482 : TTTATACTCTGTTATATC : 238501 vulgar: gi|528747946|gb|AGS43068.1| 23 306 . KQ414889.1 236831 238501 + 282 M 27 81 G 2 0 M 134 402 G 0 3 M 78 234 G 0 3 M 26 78 S 0 1 5 0 2 I 0 817 3 0 2 S 1 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236832 238501 282 + . gene_id 13 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 236832 237633 . + . KQ414889.1 exonerate:protein2genome:local exon 236832 237633 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 237634 237635 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 237634 238454 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 238453 238454 . + . intron_id 0 ; splice_site "TG" KQ414889.1 exonerate:protein2genome:local cds 238455 238501 . + . KQ414889.1 exonerate:protein2genome:local exon 238455 238501 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 236832 238501 282 + . alignment_id 13 ; Query gi|528747946|gb|AGS43068.1| ; Align 236832 24 81 ; Align 236913 53 402 ; Align 237318 187 234 ; Align 237555 265 78 ; Align 238457 292 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 262 Query range: 13 -> 209 Target range: 294636 -> 295227 14 : GluAspLysValGlnThrGluGlnAsnLysAsnTyrLysSerAspIleGluTyrAlaL : 33 ||| |||:!!.!.! ! ..!:!! ! !.! !!!:!!:!|||:!:! ! !!::!| GluLeuLysIleAspArgThrMetAspAspThrAsnArgAsnAspValAlaAsnSerL 294637 : GAATTGAAAATAGACAGAACCATGGACGATACTAACAGAAACGACGTGGCGAACAGCC : 294694 34 : euLysLeuAsnArgTrpLeuLeuAsnProIleSerLeuTrpProLeu<->ProSerHi : 51 |||||! ! !||| !!||||||!!.||||||.!!|||||||||||| !||||| euLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrSerHi 294695 : TCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACAGTCA : 294751 52 : sValSerAlaLeuLysLysIleGlnPheLysPheIleArgThrMetGlyTrpPhePhe : 70 |..!||| !|||!!.|||:!!! ! ! !.!!:!:! !.!! ! !! !!!. ! sThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLeuThr 294752 : CACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTTGACC : 294808 71 : LeuAlaPheLeuIleIleProThrSerLeuHisThrIleLeuValGlnThrAspProA : 90 :!! !|||:!!:!!:!:||| !.!!! ! ! !:!!!!! ! ::: . ValLeuPheValLeuValProCysGlyTyrPheCysValPheHisValLysAsnValL 294809 : GTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaacgtga : 294868 91 : snValLysLeuLysMetIleGlyProLeuGlyPheCysValMetValIleValLysPh : 109 ..:::|||:!!|||:!::!:||||||:!! !!:!! !:!!:!: !!!::!!!:!!: ysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuArgTy 294869 : aattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCAGGTA : 294925 110 : ePheValPheValValArgAlaLysAsnIleLysIleCysValAspHisValValAla : 128 ! ! !.!.|||:!!!:!.!! .!!||| !|||:!!!!: !!:!!! ! ! rSerCysLeuValLeuLysThrProAlaPheLysHisCysIleGluAspIleGluAsn 294926 : CAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGAGAAC : 294982 129 : AspTrpArgAsnValAsnThrIleGluAspArgGluIleMetIleAspSerAlaArgI : 148 ||||||!:! :!!:!!!.! ||| !!|||! !||||||||| ! !:!|||! !: AspTrpLysLeuIleAspAsnProGluHisArgAlaIleMetIleLysAsnAlaMetV 294983 : GATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCGATGG : 295042 149 : leAlaArgLeuPheThrAlaAlaSerAlaLeuPheMetTyrGlyGlyGlyIleSerTy : 167 !!.!!!:! !.!.|||!.!|||! !.!!:!!.!.!!:|||.!!..!!.!:!:||||| alThrGlnArgMetThrValAlaPheThrIleIleIleTyrSerSerAlaValSerTy 295043 : TCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGTCGTA : 295099 168 : rThrIleIleLeuProLeuThrArgSerLysSerLeuSerSerAspAsnValThrIle : 186 | ! !|||:::|||... ::: ! ! !!:!!.! ! ||| !|||||| rHisAlaIleValProPhePheSerAsnAlaLeuGluAsnLysLysAsnAsnThrIle 295100 : TCACGCCATTGtgccatttttttcaaacgctTTGGAGAACAAGAAGAATAATACGATT : 295156 187 : LysValLeuProTyrProCysTyrPhePhePhePheAspProGlnIleSerProIleT : 206 :::!.!|||||| !||| !!||| !!.||| ! ||| !! ! !||||||! !| ArgAlaLeuProIleProGlyTyrGluLeuPheValAspAlaTyrSerSerProThrT 295157 : CGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGTCCTACCT : 295216 207 : yrGluLeuIle : 209 |||||:!!||| yrGluIleIle 295217 : ACGAGATCATA : 295227 vulgar: gi|528747946|gb|AGS43068.1| 13 209 . KQ414889.1 294636 295227 + 262 M 35 105 G 0 3 M 161 483 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294637 295227 262 + . gene_id 14 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294637 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294637 295227 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294637 295227 262 + . alignment_id 14 ; Query gi|528747946|gb|AGS43068.1| ; Align 294637 14 105 ; Align 294745 49 483 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 241 Query range: 279 -> 402 Target range: 234524 -> 235147 280 : LeuIleSerThrMetGluAsnIlePheAsnGluIlePheLeuIleGluValValGlyC : 299 !!!||| !!!.!!!:||||||:!!.!.||| !|||! !|||:!!|||:!!||||||| PheIleArgAsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuValGlyC 234525 : TTTATACGGAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGAT : 234582 300 : ysThrPheIleLeuCysPheLeuGlyTyrTyrCysMetThr >>>> Target Int : 313 |||||!!.! !:!!|||.!.|||! !||||||! :!:||| 189 b ysThrLeuAsnMetCysMetLeuGluTyrTyrLeuLeuThr++ 234583 : GCACGTTGAACATGTGCATGCTCGAGTATTATTTACTCACGgt............... : 234626 314 : ron 1 >>>> AspLeuThrGluSerGluThrValGlyLeuIleAlaTyrPheLeuL : 328 p !!: ::::::...::: ||| !:!!||| !!:!!: ++GluLysSerLysGluLys---------LeuAlaSerTyrValIleV 234627 : ..........agGAAAAgtcgaaggaaaaa---------ttagCTTCATACGTCATCG : 234849 329 : euLeuIleSerLeuThrPheAsnValPheAlaPheCysTyrIleGlyGluLeuIleTh : 347 !!! !:!:|||:!!|||||||||:::||| |||||||||||||||||| !:!!|| alTyrValSerMetThrPheAsnIlePheIlePheCysTyrIleGlyGluThrLeuTh 234850 : TGTACGTGTCCATGACATTtaatatattcatattttgttACATCGGAGAGACGCTTAC : 234906 348 : rAsnGln >>>> Target Intron 2 >>>> CysMetGlnIleGlyGlnAlaA : 357 |.!.||| 74 bp |||! :!!:!!|||:!! !! rGluGln++ ++CysThrLysValGlyGluLysV 234907 : AGAGCAGgt.........................agTGTACCAAAGTCGGAGAAAAAG : 235010 358 : laTyrMetThrGluTrpTyrArgLeuGluGlyLysAsnAlaSerAsnLeuIleAlaLe : 376 .!|||||||||||||||||||||||| !|||!.!||| !..!|||:!! !:! alTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeuValMetIl 235011 : TGTACATGACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTGGTAATGAT : 235067 377 : uIleIleIleSerAsnArgProValPheLeuThrAlaGlyArgMetIleAsnLeuSer : 395 !||| !! |||!:!! ! !:!! :!!|||||||||!:!.!.:!!.!.:!!||| eIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheLeuGlnMetSer 235068 : CATCTCCAGGTCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTACAAATGTCT : 235124 396 : TyrAsnSerPheCysGlnVal : 402 ! !!!||| !!.!.||| ValAlaThrPheGlyAspVal 235125 : GTCGCAACATTTGGCGATGTG : 235147 vulgar: gi|528747946|gb|AGS43068.1| 279 402 . KQ414889.1 234524 235147 + 241 M 33 99 5 0 2 I 0 185 3 0 2 M 6 18 G 3 0 M 28 84 5 0 2 I 0 70 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234525 235147 241 + . gene_id 15 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234525 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234525 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234624 234625 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234624 234812 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234811 234812 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234813 234914 . + . KQ414889.1 exonerate:protein2genome:local exon 234813 234914 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 234915 234916 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234915 234988 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 234987 234988 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234989 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 234989 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234525 235147 241 + . alignment_id 15 ; Query gi|528747946|gb|AGS43068.1| ; Align 234525 280 99 ; Align 234813 313 18 ; Align 234831 322 84 ; Align 234989 350 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 193 Query range: 315 -> 416 Target range: 206059 -> 207604 316 : GluSerGluThrValGlyLeuIleAlaTyrPheLeuLeuLeuIleSerLeuThrPheA : 335 .!.!:!.!.|||..!!.!:!!|||!.!|||.!! !|||! !||||||! !|||||| AsnAsnAsnThrThrAlaValIleValTyrIleThrLeuGlnIleSerCysThrPheC 206060 : AACAATAATACAACAGCGGTTATAGTGTACATCACGTTGCAGATATCTTGTACATTCT : 206117 336 : snValPheAlaPheCysTyrIleGlyGluLeuIleThrAsnGln >>>> Target : 350 !|||||| !.!.||||||||||||:!!|||:!!! !:!!||| 81 ysValPheIleLeuCysTyrIleGlyGlnLeuLeuIleAspGln++ 206118 : GCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGATCAAgt............ : 206164 351 : Intron 1 >>>> CysMetGlnIleGlyGlnAlaAlaTyrMetThrGluTrpTyrA : 364 bp ! :!:||| !.!!:!!! !! !..!.!.||||||| ++AsnHisValValGlyLeuThrSerCysThrValAsnTrpTyrA 206165 : .............agAACCACGTCGTGGGATTGACATCTTGCACGGTGAATTGGTATC : 206285 365 : rgLeuGluGlyLysAsnAlaSerAsnLeuIleAlaLeuIleIleIleSerAsnArgPr : 383 ||||| !..!!:!:!!||| !!::!:!!||| !:!!||| !!!:|||||| !|| rgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMetSerAsnTyrPr 206286 : GTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCATGTCTAATTACCC : 206342 384 : oValPheLeuThrAlaGlyArgMetIleAsnLeuSerTyrAsnSerPheCysGln > : 402 |:!! ||||||||||||!:!|||.!!.!.:!!|||! !|||||| !.!. oIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSerPheThrAsp++ 206343 : AATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGTTTCACCGATgt. : 206401 403 : >>> Target Intron 2 >>>> ValIleLysSerSerLeuAlaTyrLeuAsnIl : 412 1161 bp |||!!:||| !:!!:!!!.!|||!!!||||| ++ValMetLysValAlaMetGlyTyrPheAsnIl 206402 : ........................agGTAATGAAGGTGGCGATGGGATACTTCAACAT : 207590 413 : eLeuArgGlnVal : 416 |||||||:!!||| eLeuArgGluVal 207591 : ACTCCGTGAAGTC : 207604 vulgar: gi|528747946|gb|AGS43068.1| 315 416 . KQ414889.1 206059 207604 + 193 M 34 102 5 0 2 I 0 77 3 0 2 M 52 156 5 0 2 I 0 1157 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 206060 207604 193 + . gene_id 16 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 206060 206161 . + . KQ414889.1 exonerate:protein2genome:local exon 206060 206161 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206162 206163 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206162 206242 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206241 206242 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206243 206398 . + . KQ414889.1 exonerate:protein2genome:local exon 206243 206398 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 206399 206400 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 206399 207559 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 207558 207559 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 207560 207604 . + . KQ414889.1 exonerate:protein2genome:local exon 207560 207604 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 206060 207604 193 + . alignment_id 16 ; Query gi|528747946|gb|AGS43068.1| ; Align 206060 316 102 ; Align 206243 350 156 ; Align 207560 402 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 20 -> 129 Target range: 299659 -> 299989 21 : GlnAsnLysAsnTyrLysSerAspIleGluTyrAlaLeuLysLeuAsnArgTrpLeuL : 40 ::!||| ! :!!|||:!!!:!||||||.!.|||.!!|||:!!:!! !!:!||||||| ArgAsnTyrHisTyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuL 299660 : AGGAATTACCATTACCAAAATGACATACATTACACGCTGCAAATGTGCCAATGGTTGT : 299717 41 : euAsnProIleSerLeuTrpPro<->LeuProSerHisValSerAlaLeuLysLysIl : 58 ||!!.||||||.!!:!!|||! ! ||| !..!!.! !||| !|||:!! ! :! euLysProIleGlyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHisLe 299718 : TGAAACCTATCGGAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCT : 299774 59 : eGlnPheLysPheIleArgThrMetGlyTrpPhePheLeuAlaPheLeuIleIlePro : 77 ! ! ! !!:!!! !|||!!: !!!::! ! !||| !|||:!!:!!:!:||| uValSerIleValLeuMetThrIleCysPheSerSerLeuPhePheIleValLeuPro 299775 : CGTCTCGATCGTTCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCA : 299831 78 : ThrSerLeuHisThrIleLeuValGlnThrAspProAsnValLysLeuLysMetIleG : 97 :!!.!!! !:!!! !.!!!!!!.!:!!! !..! !:!!||||||:!!|||:!:.!!| SerGlyHisTyrIlePhePheAlaGluLysSerIleHisValLysValLysValPheG 299832 : TCCGGTCATTACATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCG : 299891 98 : lyProLeuGlyPheCysValMetValIleValLysPhePheValPheValValArgAl : 116 |||||:!!|||||||||:!! !|||||||||!:!! ! !.!! !:!!!.!!. lyProValGlyPheCysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAsnGl 299892 : GTCCGGTTGGTTTTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGG : 299948 117 : aLysAsnIleLysIleCysValAspHisValValAlaAsp : 129 ! .!!:!! !|||:!!.!.||||||! ! !||| yGlyAlaPheGluArgCysIleGlnHisValGluArgAsp 299949 : TGGCGCGTTCGAACGATGCATCCAACACGTCGAGAGAGAC : 299989 vulgar: gi|528747946|gb|AGS43068.1| 20 129 . KQ414889.1 299659 299989 + 165 M 27 81 G 0 3 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299660 299989 165 + . gene_id 17 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299660 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299660 299989 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299660 299989 165 + . alignment_id 17 ; Query gi|528747946|gb|AGS43068.1| ; Align 299660 21 81 ; Align 299744 48 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 348 -> 417 Target range: 254271 -> 254567 349 : GlnCysMetGlnIleGlyGlnAlaAlaTyrMetThrGluTrpTyrArgLeuGluGlyL : 368 ||||||:!!:!!:!!|||:!!!.!!.!|||||||||!!:|||||| !||| ! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 369 : ysAsnAlaSerAsnLeuIleAlaLeuIleIleIleSerAsnArgProValPheLeuTh : 387 :!!.. ! !:!!|||||| !:!!|||! ! !|||||| ! !||| :!!|| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 388 : rAlaGlyArgMetIleAsnLeuSerTyrAsnSerPheCysGln >>>> Target I : 402 |||||||::::::...::::::||| ! !!!!!||| !!.!. 89 rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATgt............. : 254433 403 : ntron 1 >>>> ValIleLysSerSerLeuAlaTyrLeuAsnIleLeuArgGlnVa : 416 bp |||:!!|||!!!.!!!!!||||||||||||!!:||| !!|||:! ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMe 254434 : ............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAAAT : 254562 417 : lThr : 417 !:!! tSer 254563 : GTCC : 254567 vulgar: gi|528747946|gb|AGS43068.1| 348 417 . KQ414889.1 254271 254567 + 146 M 53 159 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254567 146 + . gene_id 18 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 254272 254430 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254430 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 254431 254432 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 254431 254519 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 254518 254519 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 254520 254567 . + . KQ414889.1 exonerate:protein2genome:local exon 254520 254567 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254567 146 + . alignment_id 18 ; Query gi|528747946|gb|AGS43068.1| ; Align 254272 349 159 ; Align 254520 402 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 348 -> 408 Target range: 238625 -> 238805 349 : GlnCysMetGlnIleGlyGlnAlaAlaTyrMetThrGluTrpTyrArgLeuGluGlyL : 368 ||||||:!!:!!:!!|||:!!!.!!.!|||||||||!!:|||||| !||| ! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 369 : ysAsnAlaSerAsnLeuIleAlaLeuIleIleIleSerAsnArgProValPheLeuTh : 387 :!!.. ! !:!!|||||| !:!!|||! ! !|||||| ! !||| :!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 388 : rAlaGlyArgMetIleAsnLeuSerTyrAsnSerPheCysGlnValIleLysSerSer : 406 |||||||!:!:!::!!:!!:!!||| ! !!!!!||| !!.!.|||! !:!!!!!!:! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 407 : LeuAla : 408 |||||| LeuAla 238798 : CTTGCT : 238805 vulgar: gi|528747946|gb|AGS43068.1| 348 408 . KQ414889.1 238625 238805 + 119 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238805 119 + . gene_id 19 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238805 119 + . alignment_id 19 ; Query gi|528747946|gb|AGS43068.1| ; Align 238626 349 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 348 -> 407 Target range: 244655 -> 244832 349 : GlnCysMetGlnIleGlyGlnAlaAlaTyrMetThrGluTrpTyrArgLeuGluGlyL : 368 ||||||:!!:!!:!!|||:!!!.!!.!|||||||||!!:|||||| !||| ! !! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 369 : ysAsnAlaSerAsnLeuIleAlaLeuIleIleIleSerAsnArgProValPheLeuTh : 387 :!!.. ! !:!!|||||| !:!!|||! ! !||||||! ! !||| :!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 388 : rAlaGlyArgMetIleAsnLeuSerTyrAsnSerPheCysGlnValIleLysSerSer : 406 |||||||!:!:!::!!:!!:!!||| ! !!!!!||| !!.!.|||! !:!!!!!!.! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrLys 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAA : 244827 407 : Leu : 407 ||| Leu 244828 : CTT : 244832 vulgar: gi|528747946|gb|AGS43068.1| 348 407 . KQ414889.1 244655 244832 + 117 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244832 117 + . gene_id 20 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 244656 244832 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244832 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244832 117 + . alignment_id 20 ; Query gi|528747946|gb|AGS43068.1| ; Align 244656 349 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 315 -> 363 Target range: 301695 -> 301839 316 : GluSerGluThrValGlyLeuIleAlaTyrPheLeuLeuLeuIleSerLeuThrPheA : 335 .!.|||!!:|||:!!!.!:!!:!:.!!!:!||| !||||||! |||!!!||||||| AsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuThrSerPheThrPheA 301696 : AATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAACGTCGTTCACTTTCA : 301753 336 : snValPheAlaPheCysTyrIleGlyGluLeuIleThrAsnGlnCysMetGlnIleGl : 354 ||:!!||| !||||||||||||||||||:!!:!!:!!.!.||| :!: !.! snIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGlnValLeuThrTyrSe 301754 : ATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACAGGTACTTACTTACAG : 301810 355 : yGlnAlaAlaTyrMetThrGluTrpTyr : 363 !::!::: :::... ... !||| rArgSerPheHisPhePheSerMetTyr 301811 : TAGAagtttccatttcttttcaatGTAT : 301839 vulgar: gi|528747946|gb|AGS43068.1| 315 363 . KQ414889.1 301695 301839 + 114 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301696 301839 114 + . gene_id 21 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 301696 301839 . + . KQ414889.1 exonerate:protein2genome:local exon 301696 301839 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301696 301839 114 + . alignment_id 21 ; Query gi|528747946|gb|AGS43068.1| ; Align 301696 316 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 312 -> 349 Target range: 224323 -> 224434 313 : AspLeuThrGluSerGluThrValGlyLeuIleAlaTyrPheLeuLeuLeuIleSerL : 332 ::: :::...|||.!. !..!.!! !:!:.!!||||||:!!||||||!!:|||| GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 333 : euThrPheAsnValPheAlaPheCysTyrIleGlyGluLeuIleThrAsnGln : 349 |||||||||||:::||| |||||||||||||||||||||:!!.!!.!.||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcag : 224434 vulgar: gi|528747946|gb|AGS43068.1| 312 349 . KQ414889.1 224323 224434 + 112 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224434 112 + . gene_id 22 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224434 112 + . alignment_id 22 ; Query gi|528747946|gb|AGS43068.1| ; Align 224324 313 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 312 -> 352 Target range: 272836 -> 272956 313 : AspLeuThrGluSerGluThrValGlyLeuIleAlaTyrPheLeuLeuLeuIleSerL : 332 :!:! !|||!!: !!!: ! !.!!|||! !.!!||||||:!!:!!|||||||||: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 333 : euThrPheAsnValPheAlaPheCysTyrIleGlyGluLeuIleThrAsnGlnCysMe : 351 !:|||||||||:::||| |||||||||||||||:!!:!!|||.!.::! || etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArgValMe 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGGGTAAT : 272951 352 : tGln : 352 |||| tGln 272952 : gcaa : 272956 vulgar: gi|528747946|gb|AGS43068.1| 312 352 . KQ414889.1 272836 272956 + 112 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 272956 112 + . gene_id 23 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272837 272956 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272956 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 272956 112 + . alignment_id 23 ; Query gi|528747946|gb|AGS43068.1| ; Align 272837 313 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 301 -> 353 Target range: 261700 -> 261856 302 : IleLeuCysPheLeuGlyTyrTyrCysMetThrAspLeuThrGluSerGluThrValG : 321 |||:!!! !||| :::::: ::: !!:! !.!!|||..!!!:! ! !. IleIlePhePhe***TyrPhePheLeuLeuGlnGluTrpAlaGluGlnAspIleGlnA 261701 : ATAATCTTTTTctgatatttctttcttttgcagGAATGGGCTGAGCAAGATATACAAA : 261758 322 : lyLeuIleAlaTyrPheLeuLeuLeuIleSerLeuThrPheAsnValPheAlaPheCy : 340 .!||| !.!!||||||:!!:!!||||||:!!:!! !|||||||||||| !.!!|| snLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnValPheIleIleCy 261759 : ATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGTATTTATAATCTG : 261815 341 : sTyrIleGlyGluLeuIleThrAsnGlnCysMetGlnIle : 353 |||||||||||||:!!:!!|||.!.||| ...!!.:!: sTyrIleGlyGluIleLeuThrGluGlnValGlnHisLeu 261816 : TTACATCGGTGAAATACTAACGGAACAGGTACAACATTTG : 261856 vulgar: gi|528747946|gb|AGS43068.1| 301 353 . KQ414889.1 261700 261856 + 109 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261701 261856 109 + . gene_id 24 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 261701 261856 . + . KQ414889.1 exonerate:protein2genome:local exon 261701 261856 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 261701 261856 109 + . alignment_id 24 ; Query gi|528747946|gb|AGS43068.1| ; Align 261701 302 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 304 -> 346 Target range: 305076 -> 305202 305 : PheLeuGlyTyrTyrCysMetThrAspLeuThrGluSerGluThrValGlyLeuIleA : 324 |||||| ||| !|||! ! !...|||.!.||||||.!!|||! !. PheLeuValLeuTyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrT 305077 : TTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAA : 305134 325 : laTyrPheLeuLeuLeuIleSerLeuThrPheAsnValPheAlaPheCysTyrIleGl : 343 !!||| :!!||||||||||||:!!|||||||||:!!||| !!!.||||||||||| hrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGl 305135 : CATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGG : 305191 344 : yGluLeuIle : 346 ||||:!!:!! yGluIleLeu 305192 : TGAGATTCTT : 305202 vulgar: gi|528747946|gb|AGS43068.1| 304 346 . KQ414889.1 305076 305202 + 109 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305077 305202 109 + . gene_id 25 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305077 305202 . + . KQ414889.1 exonerate:protein2genome:local exon 305077 305202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305077 305202 109 + . alignment_id 25 ; Query gi|528747946|gb|AGS43068.1| ; Align 305077 305 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 315 -> 349 Target range: 219337 -> 219439 316 : GluSerGluThrValGlyLeuIleAlaTyrPheLeuLeuLeuIleSerLeuThrPheA : 335 ..!!:!!!:..!..!.!! !:!:.!!|||.!!:!!|||||||||||||||||||||| SerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIleSerLeuThrPheA 219338 : TCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATATCCCTcactttca : 219395 336 : snValPheAlaPheCysTyrIleGlyGluLeuIleThrAsnGln : 349 ||:::||| ||||||||||||||||||:!!:!!.!!.!.||| snIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln 219396 : acattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: gi|528747946|gb|AGS43068.1| 315 349 . KQ414889.1 219337 219439 + 106 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219338 219439 106 + . gene_id 26 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219338 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219338 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219338 219439 106 + . alignment_id 26 ; Query gi|528747946|gb|AGS43068.1| ; Align 219338 316 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 315 -> 349 Target range: 291377 -> 291479 316 : GluSerGluThrValGlyLeuIleAlaTyrPheLeuLeuLeuIleSerLeuThrPheA : 335 ...|||!!::!!:!!|||:!!:!!.!!||| !! !||||||! !|||!!!||||||| SerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerPheThrPheA 291378 : AGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTTTCACTTTCA : 291435 336 : snValPheAlaPheCysTyrIleGlyGluLeuIleThrAsnGln : 349 ||:!!.!. !|||||||||:!!|||||||||:!! !...||| snIleLeuIlePheCysTyrValGlyGluLeuLeuLeuGlyGln 291436 : ACATACTGATATTCTGTTACGTTGGCGAACTTCTTCTTGGACAG : 291479 vulgar: gi|528747946|gb|AGS43068.1| 315 349 . KQ414889.1 291377 291479 + 101 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291378 291479 101 + . gene_id 27 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 291378 291479 . + . KQ414889.1 exonerate:protein2genome:local exon 291378 291479 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291378 291479 101 + . alignment_id 27 ; Query gi|528747946|gb|AGS43068.1| ; Align 291378 316 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 322 -> 349 Target range: 214659 -> 214740 323 : IleAlaTyrPheLeuLeuLeuIleSerLeuThrPheAsnValPheAlaPheCysTyrI : 342 :!!.!!||| ! :!!|||! !||||||||||||||||||:::||| |||||||||| ValThrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrI 214660 : GTAACTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCA : 214717 343 : leGlyGluLeuIleThrAsnGln : 349 |||||||||||:!::!!.!.||| leGlyGluLeuValSerGluGln 214718 : TAGGCGAGCTTGTGTCTGAACAG : 214740 vulgar: gi|528747946|gb|AGS43068.1| 322 349 . KQ414889.1 214659 214740 + 100 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214660 214740 100 + . gene_id 28 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214660 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214660 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214660 214740 100 + . alignment_id 28 ; Query gi|528747946|gb|AGS43068.1| ; Align 214660 323 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr297PSE Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 334 -> 388 Target range: 1712537 -> 1713333 335 : GlySerValLeuSerThrAsnLeuArgMetIleIleLeuArgSerArgLysProCy : 353 |||!!!:!!:!!!!!! !:!!|||! !:!::!!|||:!!||||||||| !||||| GlyArgMetIleArgLysAspLeuIleLeuValIleIleArgSerArgValProCy 1712538 : GGAAGAATGATAAGGAAGGATTTGATACTCGTTATCATAAGATCGAGAGTACCTTG : 1712592 354 : sThrIleThrAlaGlyLysPheTyrAspMetSerLeuGluSerPheLeuLys >> : 371 | !:!:|||||| !! !|||!:!! !!:|||||||||!!!!:! !||| sCysLeuThrAlaArgGlyPhePheValIleSerLeuGluThrTyrThrLys++ 1712593 : TTGCTTGACCGCCAGAGGATTCTTCGTAATATCTTTGGAAACGTATACGAAGgt.. : 1712648 372 : >> Target Intron 1 >>>> ValMetSerSerSerPheSerTyrPheThrV : 381 634 bp |||!!:|||!!!:!! ! ||||||||||||: ++ValIleSerThrAlaValSerTyrPheThrL 1712649 : .......................agGTTATAAGTACAGCAGTGTCGTACTTCACAC : 1713310 382 : alLeuLeuAlaMetArgGluGlu : 388 !!||| ! ! ! !|||||| euLeuArgGlnArgIleGluGlu 1713311 : TGTTAAGGCAACGTATAGAGGAA : 1713333 vulgar: NvOr297PSE 334 388 . KQ414915.1 1712537 1713333 + 116 M 36 108 5 0 2 I 0 630 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712538 1713333 116 + . gene_id 1 ; sequence NvOr297PSE ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1712538 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712538 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713333 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713333 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712538 1713333 116 + . alignment_id 1 ; Query NvOr297PSE ; Align 1712538 335 108 ; Align 1713280 371 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr296 Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 333 -> 387 Target range: 1712537 -> 1713333 334 : GlySerAlaLeuSerSerAsnLeuArgLeuIleValLeuArgSerArgLysProCy : 352 |||!!! !:!!!!!!.!:!!|||! !|||:!!:!!:!!||||||||| !||||| GlyArgMetIleArgLysAspLeuIleLeuValIleIleArgSerArgValProCy 1712538 : GGAAGAATGATAAGGAAGGATTTGATACTCGTTATCATAAGATCGAGAGTACCTTG : 1712592 353 : sThrIleThrAlaGlyLysPheTyrAspMetSerPheGluSerPheLeuLys >> : 370 | !:!:|||||| !! !|||!:!! !!:|||!!.|||!!!!:! !||| sCysLeuThrAlaArgGlyPhePheValIleSerLeuGluThrTyrThrLys++ 1712593 : TTGCTTGACCGCCAGAGGATTCTTCGTAATATCTTTGGAAACGTATACGAAGgt.. : 1712648 371 : >> Target Intron 1 >>>> ValLeuSerSerSerPheSerTyrPheThrV : 380 634 bp |||:!!|||!!!:!! ! ||||||||||||: ++ValIleSerThrAlaValSerTyrPheThrL 1712649 : .......................agGTTATAAGTACAGCAGTGTCGTACTTCACAC : 1713310 381 : alLeuLeuAlaMetGluGluGlu : 387 !!||| ! ! !|||||| euLeuArgGlnArgIleGluGlu 1713311 : TGTTAAGGCAACGTATAGAGGAA : 1713333 vulgar: NvOr296 333 387 . KQ414915.1 1712537 1713333 + 113 M 36 108 5 0 2 I 0 630 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712538 1713333 113 + . gene_id 1 ; sequence NvOr296 ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1712538 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712538 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713333 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713333 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712538 1713333 113 + . alignment_id 1 ; Query NvOr296 ; Align 1712538 334 108 ; Align 1713280 370 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr301FIX Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 348 -> 414 Target range: 3152 -> 3428 349 : GluIleValPheAsnAspThrTyrCysGlyTyrTrpTyrAsnIleSerProAsnAlaArgLy : 369 :!!|||||| ! !..!! !||| !!!.!! |||||||||! !..! !!...!!!:!.. LysIleValHisPheSerArgTyrSerAlaLeuTrpTyrAsnSerAspLysArgThrGlnSe 3153 : aAAATTGTCCATTTTTCTAGATACAGCGCTTTGTGGTATAACAGCGACAAGAGAACGCAATC : 3213 370 : sTyrThrGlnMetValMetValArgSerMetLysProCysIleIleThrAlaGlyGlyLeuI : 390 !! ! !:!:!.!:!: !!.!!!!:!:... !! ! !||||||||||||||||||| rLeuPheValLeuAlaLeuArgAsnCysLeuSerAlaProGlnIleThrAlaGlyGlyLeuI 3214 : GTTGTTTGTATTAGCGTTAAGAAATTGTCTATCTGCTCCTCAAATAACAGCCGGTGGACTAA : 3276 391 : leAsnMetAsnLeuGlnSerPhePheAla >>>> Target Intron 1 >>>> IleL : 401 ||!..||||||||||||||||||! ! ! 78 bp |||: leThrMetAsnLeuGlnSerPheSerGlu++ ++IleV 3277 : TTACAATGAACTTGCAAAGTTTCTCAGAGgt.........................agATTG : 3387 402 : euLysThrSerValSerTyrAlaThrValMetLeuSerMet : 414 !!|||||||||||||||||| !! !|||:!! !|||:!: alLysThrSerValSerTyrTyrMetValLeuLysSerVal 3388 : TAAAGACGTCTGTCTCGTACTACATGGTACTGAAATCCGTA : 3428 vulgar: NvOr301FIX 348 414 . KQ414921.1 3152 3428 + 118 M 51 153 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 3153 3428 118 + . gene_id 1 ; sequence NvOr301FIX ; gene_orientation + KQ414921.1 exonerate:protein2genome:local cds 3153 3305 . + . KQ414921.1 exonerate:protein2genome:local exon 3153 3305 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local splice5 3306 3307 . + . intron_id 1 ; splice_site "GT" KQ414921.1 exonerate:protein2genome:local intron 3306 3383 . + . intron_id 1 KQ414921.1 exonerate:protein2genome:local splice3 3382 3383 . + . intron_id 0 ; splice_site "AG" KQ414921.1 exonerate:protein2genome:local cds 3384 3428 . + . KQ414921.1 exonerate:protein2genome:local exon 3384 3428 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 3153 3428 118 + . alignment_id 1 ; Query NvOr301FIX ; Align 3153 349 153 ; Align 3384 400 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr300 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 321 -> 380 Target range: 117770 -> 117947 322 : TyrIleTyrIleTyrThrSerSerGlnValGlyPheGluAlaTyrAsnLeuArgTrpT : 341 !:!:!!|||.!! ! !|||..! !:!!||| !! !||||||!..:!!! !|||: PheValTyrPheValGlnSerGluAlaIleGlyArgAlaAlaTyrThrValProTrpH 117771 : TTCGTCTACTTTGTTCAGAGCGAAGCGATCGGTCGTGCAGCCTATACGGTGCCTTGGC : 117828 342 : yrAspTrpIleGluAspAspLysSerLeuValThrPheLeuIleThrArgSerGlnLy : 360 !! !:: !... ! ::!!.!! !..!!.!.!.|||!!:! !|||.!!||||| isTrpTyrProArgCysLeuArgLysProThrAsnMetLeuMetIleArgGlyGlnLy 117829 : ATTGGTACCCTCGTTGCTTGCGAAAACCAACCAACATGCTGATGATCAGAGGTCAGAA : 117885 361 : sProMetLeuIleThrAlaGlyArgPheThrSerIleSerLeuGluThrPheSerAla : 379 ||||:!:! !:!:|||||||||!:!.!!..!.!!:!!|||||||||||||||:!!:!! sProValArgLeuThrAlaGlyLysIleValGlyLeuSerLeuGluThrPheAlaSer 117886 : ACCGGTTCGTCTGACCGCCGGAAAAATCGTCGGACTCTCTCTGGAAACGTTTGCCTCT : 117942 380 : Val : 380 ||| Val 117943 : GTA : 117947 vulgar: NvOr300 321 380 . KQ414940.1 117770 117947 + 105 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 117771 117947 105 + . gene_id 1 ; sequence NvOr300 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 117771 117947 . + . KQ414940.1 exonerate:protein2genome:local exon 117771 117947 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 117771 117947 105 + . alignment_id 1 ; Query NvOr300 ; Align 117771 322 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr298 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 302 -> 399 Target range: 807287 -> 807578 303 : LysAsnIleValGlyLeuLeuSerPheCysIleTyrLeuLeuValPheAsnPheArgL : 322 |||:!!! !|||!.! !|||!!! !! !:!! :!!:!!..!!!. .!!!:!| LysAspAsnValAlaAlaLeuArgSerPheValLeuMetValThrLeuLeuIleGlnL 807288 : AAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGC : 807345 323 : euPheMetTyrCysAsnValPheAspAlaMetValGluMetGlyGluLysValGlyAl : 341 ||!:!:!:|||..! !!!.! !:!!.!!:!:! !..! !|||:!!:!!!.! euTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluGluIleAlaGl 807346 : TGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACA : 807402 342 : aSerAlaTyrAspIleSerTrpTyrAspPheHisProGluAlaValArgGlnLeuMet : 360 !:!!||||||||| ! !|||||| !! !||| !.!.|||!.!|||.!.|||:!: nAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeu 807403 : AGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTT : 807459 361 : PheCysIleLeuArgAlaAsnLysProLeuAsnValThrAlaGlyLysPhePheSerL : 380 !!. !|||! !|||!.!|||..!|||! !..!:!!||||||||||||||| !! !!: LeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheValProM 807460 : TTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGA : 807519 381 : euAsnArgAsnSerTyrLysAsnValIleMetThrSerSerSerTyrAlaSerValLe : 399 !!|||! ! !!!!!:!|||.!.:!!:!:! .!!|||.!!|||||| !||||||:! etAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSerValMe 807520 : TGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAAT : 807576 400 : u : 399 ! t 807577 : G : 807578 vulgar: NvOr298 302 399 . KQ414940.1 807287 807578 + 158 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807288 807578 158 + . gene_id 1 ; sequence NvOr298 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807288 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807288 807578 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807288 807578 158 + . alignment_id 1 ; Query NvOr298 ; Align 807288 303 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747954|gb|AGS43072.1| odorant receptor Or4a [Cephus cinctus] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 268 -> 366 Target range: 807263 -> 807557 269 : ValTyrGlnLeuSerLysHisSerValAspSerAlaLysPheMetProLeuIleLeuT : 288 |||!:!! !:!!:!! ! !!!! !|||!:!!.! ! :!! ! !.!!:!! ValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValL 807264 : GTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTC : 807321 289 : yrLeuLeuCysMetLeuPheGlnLeuPhePheTyrCysTrpTyrGlyAsnGluValIl : 307 :!!:!! !:!!|||.!!||||||!:!.!!|||..!!:: |||||| !:!! euMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGl 807322 : TGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGA : 807378 308 : eLeuLysSerMetGluValArgAspAlaValTyrGluMetAspTrpIleLeuLeuAsp : 326 ! !::!!!! |||:!! !.!.|||!.!|||!!: !||| !! !! ! !! uSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHis 807379 : GTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCAC : 807435 327 : AsnAsnAsnLysLysAlaLeuLeuMetMetMetLysArgSerGluArgSerIleGlnI : 346 ...:!! !:!! !||||||:!!!!:!!: ! |||.!!.!. ! !! !!::| GlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgI 807436 : GGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTA : 807495 347 : leLysSerGlyTyrPheIleAlaLeuSerValGluProTyrIleLysIleLeuLysAl : 365 ||! !:!!||| ! |||:!! !!:!!!:!:!! !!!:!! :!!||||||||||| leThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAl 807496 : TAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGC : 807552 366 : aSer : 366 |||| aSer 807553 : TTCT : 807557 vulgar: gi|528747954|gb|AGS43072.1| 268 366 . KQ414940.1 807263 807557 + 111 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807264 807557 111 + . gene_id 1 ; sequence gi|528747954|gb|AGS43072.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807264 807557 . + . KQ414940.1 exonerate:protein2genome:local exon 807264 807557 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807264 807557 111 + . alignment_id 1 ; Query gi|528747954|gb|AGS43072.1| ; Align 807264 269 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr296 Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 302 -> 384 Target range: 807335 -> 807587 303 : ValThrGluLeuPheIlePheSerTyrGlyGlyGlnSerLeuLysSerGluSerGluG : 322 :!!! !:!!|||!:!:!!!:!:!!|||!.!|||.!.!!!|||:!!|||..!!!!|||| LeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSerArgThrGluG 807336 : CTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTCGCGAACCGAAG : 807393 323 : luValAlaGluGlyValTyrSerSerAsnTrp<-><->IleGlySerAlaLeuSerSe : 339 ||:!!|||:!!!.!!.!|||..!||| !||| ! !.!! ! !:!!!! luIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGlyHisAlaAlaAr 807394 : AAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGGCACGCAGCCAG : 807450 340 : rAsnLeuArgLeuIleValLeuArgSerArgLysProCysThrIleThrAlaGlyLys : 358 !:!!|||! !||||||:!!! !|||.!!!.!..!|||! ! !||||||||||||||| gAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLys 807451 : AGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAA : 807507 359 : PheTyrAspMetSerPheGluSerPheLeuLysValLeuSerSerSerPheSerTyrP : 378 ||| ! |||!:!.!! !!!||| !:!!:!!|||!.!:!!||| !||||||. PheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSerGlySerTyrL 807508 : TTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATC : 807567 379 : heThrValLeuLeuAlaMet : 384 !.:!!|||:!! !!.!||| euSerValMetLysValMet 807568 : TGTCTGTAATGAAGGTAATG : 807587 vulgar: NvOr296 302 384 . KQ414940.1 807335 807587 + 132 M 30 90 G 0 6 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807336 807587 132 + . gene_id 1 ; sequence NvOr296 ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807336 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807336 807587 . + . insertions 6 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807336 807587 132 + . alignment_id 1 ; Query NvOr296 ; Align 807336 303 90 ; Align 807432 333 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr297PSE Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 280 -> 387 Target range: 807266 -> 807593 281 : PheGlnLeuThrThrMetLeuGluAspArgAlaArgLeuThrLysTyrThrSerPheL : 300 |||! !:!!.!! !! !:!!|||!.!!.! ! ! !!:! ! ! !.!.: PheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuM 807267 : TTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGA : 807324 301 : euAsnThrAlaValThrGluLeuPheIlePheSerPheSerGlyGlnSerLeuLysSe : 319 !! ||| !:!!! !:!!|||!:!:!!!:!:!!!:!:!!|||.!.!!!|||:!!|| etValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSe 807325 : TGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTC : 807381 320 : rGluSerGluAspValAlaGluPheAlaTyrThrSerAsnTrp<-><->IleGlySer : 336 |..!!!!|||!!::!!|||:!! !|||||| !||| !||| ! !.!! rArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGly 807382 : GCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGG : 807438 337 : ValLeuSerThrAsnLeuArgMetIleIleLeuArgSerArgLysProCysThrIleT : 356 ! !:!!! !:!!|||! !:!!||||||! !|||.!!!.!..!|||! ! !|||| HisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleT 807439 : CACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAA : 807498 357 : hrAlaGlyLysPheTyrAspMetSerLeuGluSerPheLeuLysValMetSerSerSe : 375 |||||||||||||| ! |||!:!||| !!!||| !:!!:!!:!!!.!:!!|| hrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSe 807499 : CAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTC : 807555 376 : rPheSerTyrPheThrValLeuLeuAlaMetArgGlu : 387 | !||||||.!.:!!|||:!! !!.!|||! !!!: rGlySerTyrLeuSerValMetLysValMetMetAsp 807556 : TGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: NvOr297PSE 280 387 . KQ414940.1 807266 807593 + 133 M 53 159 G 0 6 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807267 807593 133 + . gene_id 1 ; sequence NvOr297PSE ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807267 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807267 807593 . + . insertions 6 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807267 807593 133 + . alignment_id 1 ; Query NvOr297PSE ; Align 807267 281 159 ; Align 807432 334 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr301FIX Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 350 -> 412 Target range: 2542 -> 3630 351 : ValPheAsnAspThrTyrCysGlyTyrTrpTyrAsnIleSerProAsnAlaArgLysTyrTh : 371 :!!||| ! !! !||| !!!.! ! |||||||||! !||||||!...!!!:!! LeuPheValArgArgTyrSerAlaLysTrpTyrAsnSerSerProArgThrGlnThrLeuTy 2543 : TTGTTCGTTCGCAGATATAGCGCAAAATGGTACAACAGTTCGCCGAGAACGCAAACTCTGTA : 2603 372 : rGlnMetValMetValArgSerMetLysProCysIleIleThrAlaGlyGlyLeuIleAsnM : 392 ! !:!:!.!:!! !||||||:!!! ||| :!::!!||||||||||||||||||::!: rValLeuAlaLeuArgArgSerLeuThrProProLeuLeuThrAlaGlyGlyLeuIleSerL 2604 : CGTGCTAGCTTTGAGGAGGAGCTTGACTCCGCCATTGCTCACTGCGGGAGGACTGATTTCCT : 2666 393 : etAsnLeuGlnSerPhePheAla >>>> Target Intron 1 >>>> IleLeuLysT : 403 !!||||||:!!!!!||| !! ! 902 bp ! !||||||| euAsnLeuGluThrPheAlaGlu++ ++ThrLeuLysT 2667 : TGAATTTGGAGACTTTTGCCGAGgt.........................agACTTTAAAAA : 3601 404 : hrSerValSerTyrAlaThrValMetLeu : 412 |||||:!!|||||| !.!!|||:!!:!! hrSerIleSerTyrPheAlaValLeuIle 3602 : CTTCAATCTCCTATTTCGCGGTACTGATA : 3630 vulgar: NvOr301FIX 350 412 . LHQN01025741.1 2542 3630 + 114 M 49 147 5 0 2 I 0 898 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 2543 3630 114 + . gene_id 1 ; sequence NvOr301FIX ; gene_orientation + LHQN01025741.1 exonerate:protein2genome:local cds 2543 2689 . + . LHQN01025741.1 exonerate:protein2genome:local exon 2543 2689 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local splice5 2690 2691 . + . intron_id 1 ; splice_site "GT" LHQN01025741.1 exonerate:protein2genome:local intron 2690 3591 . + . intron_id 1 LHQN01025741.1 exonerate:protein2genome:local splice3 3590 3591 . + . intron_id 0 ; splice_site "aG" LHQN01025741.1 exonerate:protein2genome:local cds 3592 3630 . + . LHQN01025741.1 exonerate:protein2genome:local exon 3592 3630 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 2543 3630 114 + . alignment_id 1 ; Query NvOr301FIX ; Align 2543 351 147 ; Align 3592 400 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 146 Query range: 348 -> 417 Target range: 4381 -> 4085 349 : GlnCysMetGlnIleGlyGlnAlaAlaTyrMetThrGluTrpTyrArgLeuGluGlyLysAs : 369 ||||||:!!:!!:!!|||:!!!.!!.!|||||||||!!:|||||| !||| ! !!:!!. GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 370 : nAlaSerAsnLeuIleAlaLeuIleIleIleSerAsnArgProValPheLeuThrAlaGlyA : 390 . ! !:!!|||||| !:!!|||! ! !|||||| ! !||| :!!|||||||||: gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 391 : rgMetIleAsnLeuSerTyrAsnSerPheCysGln >>>> Target Intron 1 >>>> : 402 :::::...::::::||| ! !!!!!||| !!.!. 89 bp ysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATgt......................... : 4220 403 : ValIleLysSerSerLeuAlaTyrLeuAsnIleLeuArgGlnValThr : 417 |||:!!|||!!!.!!!!!||||||||||||!!:||| !!|||:!!:!! ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeuCysGlnMetSer 4219 : agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTTTGTCAAATGTCC : 4086 vulgar: gi|528747946|gb|AGS43068.1| 348 417 . LHQN01027980.1 4381 4085 - 146 M 53 159 5 0 2 I 0 85 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4086 4381 146 - . gene_id 1 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4223 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4086 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4086 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4086 4381 146 - . alignment_id 1 ; Query gi|528747946|gb|AGS43068.1| ; Align 4382 349 159 ; Align 4134 402 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747946|gb|AGS43068.1| odorant receptor Or3i [Cephus cinctus] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 300 Query range: 23 -> 287 Target range: 1091 -> 299 24 : AsnTyrLysSerAspIleGluTyrAlaLeuLysLeuAsnArgTrpLeuLeuAsnProIleSe : 44 ||| ! :!!..!! !!!:|||::!|||:!!! !||||||||| !:!!!!. !|||.! AsnIleThrAlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGl 1091 : AATATAACTGCTAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGG : 1031 45 : rLeuTrpProLeuProSerHisValSerAlaLeuLysLysIleGlnPheLysPheIleArgT : 65 ! !||||||! ! !!||| ||| !|||:!!!:!||| ! !::!.!.:!:!.!. yAlaTrpProGlnSerSer------SerAsnLeuGluArgIleIleSerArgIleLeuAsnV 1030 : CGCATGGCCACAGTCCTCG------TCGAATCTCGAGAGAATCATCTCTCGAATATTGAACG : 974 66 : hrMetGlyTrpPhePheLeuAlaPheLeuIleIleProThrSerLeuHisThrIleLeuVal : 85 .!!!: !!!:: ! :!! !||| !||||||||| !|||||||||..!!!:|||! ! alIleCysTyrThrAlaValLeuPheThrIleIleProCysSerLeuHisValMetLeuGlu 973 : TGATCTGCTACACCGCAGTACTATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAA : 914 86 : GlnThrAspProAsnValLysLeuLysMetIleGlyProLeuGlyPheCysValMetValIl : 106 :!! ! ! ! !!..!|||:!!|||!!::!!|||||||||.!! !!! |||.!. !|| LysGluThrPheTyrThrLysValLysIleLeuGlyProLeuSerHisTrpValPheCysIl 913 : AAAGAGACTTTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTAT : 851 107 : eValLysPhePheValPheValValArgAlaLysAsnIleLysIleCysValAspHisValV : 127 |:!!!..!:! !:!!.!.:!!:!!||| !|||!.!|||::: !! ! !!:!!|||:!!! eIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetG 850 : CATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGG : 788 128 : alAlaAspTrpArgAsnValAsnThrIleGluAspArgGluIleMetIleAspSerAlaArg : 147 !.!!|||||||||!....!! ||| :::|||||||||:!: ! ! !|||!:! luThrAspTrpArgThrThrMetArgLysGluLysLysGluIleMetLeuLysTyrAlaLys 787 : AGACCGATTGGAGAACGACGAtgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAA : 728 148 : IleAlaArgLeuPheThrAlaAlaSerAlaLeuPheMetTyrGlyGlyGlyIleSerTyrTh : 168 .!!::!|||! ! .!! !:!!!!!.!!:!!|||!!::!!|||||| !:!!.!!||| PheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCy 727 : TTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTG : 665 169 : rIleIleLeuProLeuThrArgSer<->LysSerLeuSerSerAspAsnValThrIleLysV : 188 !:!!!!: ! !!!!!|||! !! ! !:!!.!!!:!!!:!.!:!!! !:!::::| sValMetThrAlaPheThrThrMetValValValValGlyAsnGluThrMetIleLeuArgV 664 : TGTTATGACAGCGTTCACCACGATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCG : 602 189 : alLeuProTyrProCysTyrPhePhePhePheAspProGlnIleSerProIleTyrGluLeu : 208 ||||||||! ||| ||| .!!.!! !.!.! !:! !!!!: !!|||:!! alLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnGluIle 601 : TGCTGCCGTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATC : 542 209 : IlePheLeuAlaTyrIleLeuCysAsnIleValArgTyrSerThrThrSerGlyValCysSe : 229 :!!.!!|||:!! ! .!!|||! !....!!:!! ! !!!!!!:!.!!! !.!!||| || ValLeuLeuSerGlnPheLeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSe 541 : GTTCTTTTGTCACAGTTTCTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAG : 479 230 : rLeuAlaValValPheAlaMetHisValTyrGlyGlnCysGlnValLeuMetArgLeuLeuA : 250 ||||.!! !!.!.!..!! |||!.!! !||||||! |||:!!||| !! !:!!! rLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleG 478 : CCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCG : 416 251 : spAspPheValAspGlyGluArgGluLysSerSerThrLeuHis<->GlnArgLeuAlaAsn : 269 !:|||||||||..!! !! !|||...!:!.!!!.! ! !||| .!...!:!! !!!.. luAspPheValSerAspAlaArgArgArgGlyLysAspAspHisPheAspGluIleProThr 415 : AAGATTTTGTGAGTGATGCGAGACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACA : 356 270 : ValValValArgHisLeuArgIleLeuArgLeuIleSerThrMetGluAsnIle : 287 :!!|||! !!:!|||||||||:!:|||!:!! !:!!!!! !:!!!!: ||| IleValGluLysHisLeuArgValLeuLys***ValCysLeuLeuAspLeuIle 355 : ATCGTGGAGAAACATTTGAGAGTGTTGAAGTAAGTATGTTTGTTGGATTTGATT : 300 vulgar: gi|528747946|gb|AGS43068.1| 23 287 . LHQN01028641.1 1091 299 - 300 M 27 81 G 2 0 M 124 372 G 0 3 M 88 264 G 0 3 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 300 1091 300 - . gene_id 1 ; sequence gi|528747946|gb|AGS43068.1| ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 300 1091 . - . LHQN01028641.1 exonerate:protein2genome:local exon 300 1091 . - . insertions 6 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local similarity 300 1091 300 - . alignment_id 1 ; Query gi|528747946|gb|AGS43068.1| ; Align 1092 24 81 ; Align 1011 53 372 ; Align 636 177 264 ; Align 369 265 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: NvOr301FIX Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 355 -> 412 Target range: 7764 -> 6852 356 : TyrCysGlyTyrTrpTyrAsnIleSerProAsnAlaArgLysTyrThrGlnMetValMetVa : 376 ||| !!!.! ||||||||| !!!!|||!!.!.!!:! ! ! !:!:!.!:!! TyrSerAlaThrTrpTyrAsnGlyThrProLysValGlnAlaLeuTyrValLeuAlaLeuAr 7764 : TACAGCGCTACATGGTACAACGGTACACCGAAAGTGCAAGCTTTATACGTGCTAGCTTTGAG : 7704 377 : lArgSerMetLysProCysIleIleThrAlaGlyGlyLeuIleAsnMetAsnLeuGlnSerP : 397 !|||!:!:!!! ||| :!:|||||||||||||||||||||::!:!!||||||:!!!!!| gArgAsnLeuThrProProLeuIleThrAlaGlyGlyLeuIleSerLeuAsnLeuGluThrP 7703 : AAGGAACTTGACTCCACCGCTGATTACTGCCGGAGGACTGATCTCCTTGAATTTGGAGACTT : 7641 398 : hePheAla >>>> Target Intron 1 >>>> IleLeuLysThrSerValSerTyrA : 408 || ! ! 741 bp ! !||||||||||||:!!|||||| heAlaGlu++ ++ThrLeuLysThrSerIleSerTyrP 7640 : TCGCGGAGgt.........................agACTTTAAAAACTTCAATCTCCTATT : 6867 409 : laThrValMetLeu : 412 !.!!|||:!!:!! heAlaValLeuIle 6866 : TCGCGGTACTGATA : 6853 vulgar: NvOr301FIX 355 412 . LHQN01028732.1 7764 6852 - 109 M 44 132 5 0 2 I 0 737 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 6853 7764 109 - . gene_id 1 ; sequence NvOr301FIX ; gene_orientation + LHQN01028732.1 exonerate:protein2genome:local cds 7633 7764 . - . LHQN01028732.1 exonerate:protein2genome:local exon 7633 7764 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local splice5 7631 7632 . - . intron_id 1 ; splice_site "GT" LHQN01028732.1 exonerate:protein2genome:local intron 6892 7632 . - . intron_id 1 LHQN01028732.1 exonerate:protein2genome:local splice3 6892 6893 . - . intron_id 0 ; splice_site "aG" LHQN01028732.1 exonerate:protein2genome:local cds 6853 6891 . - . LHQN01028732.1 exonerate:protein2genome:local exon 6853 6891 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 6853 7764 109 - . alignment_id 1 ; Query NvOr301FIX ; Align 7765 356 132 ; Align 6892 400 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747954|gb|AGS43072.1| odorant receptor Or4a [Cephus cinctus] Target: LHQN01050085.1 Habropoda laboriosa contig50085, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 239 -> 320 Target range: 888 -> 648 240 : PheLysPheAlaSerAlaValGluSerValSerAsnProIleThrIleValGlnPheCysAlaS : 261 |||!:!||||||..! !:!!.!.:!! !! !!:! !! ! ! !..!|||||| !.!! PheArgPheAlaGluIleIleAsnAlaLysPheSerIleThrMetAlaThrGlnPheLeuValT 888 : TTCAGATTCGCTGAAATTATAAACGCGAAGTTCAGCATCACGATGGCCACGCAATTTCTGGTGA : 825 262 : erAlaValAlaLeuCysSerSerValTyrGlnLeuSerLysHisSerValAspSerAlaLysPh : 282 !!.!!:!!.!!:!!|||! !!:!:!!!:!!:!|||!!!:!! !!.!||| !!||| :!! ! hrThrMetThrMetCysPheAsnLeuPheArgLeuThrGlnThrLysValTyrSer---GlnVa 824 : CCACTATGACAATGTGCTTCAACCTCTTTCGACTGACACAGACCAAGGTGTATTCG---CAAGT : 765 283 : eMetProLeuIleLeuTyrLeuLeuCysMetLeuPheGlnLeuPhePheTyrCysTrpTyrGly : 303 !:!: !!||||||! !!:!:!!:!! !!:!!!!! |||:!!|||!:!! !|||||||||||| lLeuAlaLeuIleProPheMetValSerValPheAlaGlnIlePheTyrCysCysTrpTyrGly 764 : TTTAGCATTGATACCGTTCATGGTCAGTGTGTTCGCACAGATATTTTATTGTTGCTGGTATGGA : 702 304 : AsnGluValIleLeuLysSerMetGluValArgAspAlaValTyrGluMet : 320 ||||||..!! !:!!||| ! !!: !! !||| !::::::...::: AsnGluThrLysValLysValArgAspGlnThrAspPheLeuPheSerIle 701 : AACGAGACCAAAGTGAAGGTACGTGATCAAACAGACTTCttattctcaatt : 649 vulgar: gi|528747954|gb|AGS43072.1| 239 320 . LHQN01050085.1 888 648 - 106 M 40 120 G 1 0 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050085.1 exonerate:protein2genome:local gene 649 888 106 - . gene_id 1 ; sequence gi|528747954|gb|AGS43072.1| ; gene_orientation . LHQN01050085.1 exonerate:protein2genome:local cds 649 888 . - . LHQN01050085.1 exonerate:protein2genome:local exon 649 888 . - . insertions 0 ; deletions 1 LHQN01050085.1 exonerate:protein2genome:local similarity 649 888 106 - . alignment_id 1 ; Query gi|528747954|gb|AGS43072.1| ; Align 889 240 120 ; Align 769 281 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747934|gb|AGS43062.1| odorant receptor Or3c [Cephus cinctus] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 133 Query range: 262 -> 402 Target range: 1306934 -> 1305891 263 : IleIleLeuPheGlnSerCysAspIleLeuGluAsnIlePheSerProIleIlePh : 281 :!!:!!|||!:!... ! :!! :::...|||:::|||:::||||||:!!|| LeuLeuLeuTyrSerValValAsnAspValAsnAsnLeuPheThrProIleValPh 1306934 : CTACTTTTATACAGCGTGGTGAATGatgtgaataatttatttactccCATCGTTTT : 1306880 282 : eLeuThrIleIleMetThrSerThrIleMetCysAlaCysIlePheGlnPheGluL : 300 |:!! !:!!:!!! !:!.!!! !:!!!!:||| ! !! !||| eValGlnLeuLeuThrSerGlyIleValIleCysLeuSerGlyPhe---------A 1306879 : CGTACAACTTCTTACAAGCGGAATAGTAATTTGTTTAAGTGGATTC---------G : 1306832 301 : ysThrLeuSerCysGlyValTyrLeuGluIleIleLysTyrValThrHisMetMet : 318 !..!!!!..! !! !!.! ! !!!:|||:!:|||||||||:!!:!!:!! laValPheAspAsnAspAlaArgThrAspIleLeuLysTyrValSerTyrLeuSer 1306831 : CGGTTTTCGATAACGACGCCCGTACCGATATTCTGAAATACGTATCTTATTTGTCC : 1306778 319 : SerLeuPheValGluIleLeuIleTyrCysGlyPheSerAsnValLeuSerAspGl : 337 |||:!!!:::!!:!!:!!|||:!!!::||| ! !.!!.!.:!!||| !.!.:! SerIleTrpLeuGlnLeuLeuLeuTrpCysLeuProGlyGluIleLeuValGlnGl 1306777 : TCGATTTGGTTGCAACTTTTGTTATGGTGTTTGCCCGGTGAAATTCTCGTTCAAGA : 1306721 338 : nThrGluLeuLeuTyrHisAlaAlaTyr<->AsnSerGluTrpThrAspArgSerL : 355 !!:! ! !:!! |||!.!!.!||| ||| ! !||| !:!! ! !! uSerLeuGluIleGlyHisValValTyrLeuAsnValProTrpTyrAsnLeuProP 1306720 : GAGTTTAGAAATAGGACACGTAGTCTACTTAAATGTACCATGGTACAATTTGCCGC : 1306664 356 : ysLysTyrLysSerIleIleTyrPheLeuIleLeuArgSerGlnLysProPheGln : 373 !! |||:!!!!!! !:!!! !.!.:!!|||||||||:!!|||:!! !! !... roIleTyrGlnArgLysLeuCysMetMetIleLeuArgAlaGlnGlnTyrCysSer 1306663 : CAATTTACCAGAGAAAACTTTGCATGATGATCCTTAGGGCACAACAATATTGCAGC : 1306610 374 : CysThrAlaTyrHisPhePheProValGlyLeuValGlnIleThrThr >>>> T : 390 !||||||! ||| !!:!!..!:!! ! !:!!|||!:! IleThrAlaLeuThrPheArgThrLeuSerIleHisThrLeuThrSer++ 1306609 : ATCACGGCATTAACGTTTCGAACGTTGTCTATTCACACGTTAACGAGCgt...... : 1306557 391 : arget Intron 1 >>>> IleLeuThrThrAlaValSerTyrPheThrLeuLe : 401 629 bp :!!!!!!.!||||||!.!||||||||||||||||| ++ValPheAsnThrAlaAlaSerTyrPheThrLeuLe 1306556 : ...................agGTATTCAATACAGCCGCTTCATATTTCACTTTGCT : 1305897 402 : uLys : 402 |::! uArg 1305896 : GCGA : 1305892 vulgar: gi|528747934|gb|AGS43062.1| 262 402 . KQ414608.1 1306934 1305891 - 133 M 34 102 G 3 0 M 47 141 G 0 3 M 43 129 5 0 2 I 0 625 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1305892 1306934 133 - . gene_id 1 ; sequence gi|528747934|gb|AGS43062.1| ; gene_orientation + KQ414608.1 exonerate:protein2genome:local cds 1306560 1306934 . - . KQ414608.1 exonerate:protein2genome:local exon 1306560 1306934 . - . insertions 3 ; deletions 3 KQ414608.1 exonerate:protein2genome:local splice5 1306558 1306559 . - . intron_id 1 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1305931 1306559 . - . intron_id 1 KQ414608.1 exonerate:protein2genome:local splice3 1305931 1305932 . - . intron_id 0 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1305892 1305930 . - . KQ414608.1 exonerate:protein2genome:local exon 1305892 1305930 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1305892 1306934 133 - . alignment_id 1 ; Query gi|528747934|gb|AGS43062.1| ; Align 1306935 263 102 ; Align 1306833 300 141 ; Align 1306689 347 129 ; Align 1305931 390 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747914|gb|AGS43052.1| odorant receptor Or2c [Cephus cinctus] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 216 -> 350 Target range: 1306928 -> 1305882 217 : ValLeuLysLeuCysLysAspIleGluLysValThrAsnLysAlaPheLeuValGl : 235 :!!! !!..:!! !!.|||:::......::: ... ! !!!!!||||| LeuTyrSerValValAsnAspValAsnAsnLeuPheThrProIleValPheValGl 1306928 : TTATACAGCGTGGTGAATGatgtgaataatttatttactccCATCGTTTTCGTACA : 1306874 236 : nLeuIleThrSerThrTyrSerIleSerAlaIleGlyPheLysMetAsnAspSerA : 254 ||||:!!|||||| ! !|||!!! !! !|||||| !:!: !|||!:!| nLeuLeuThrSerGlyIleValIleCysLeuSerGlyPheAlaValPheAspAsnA 1306873 : ACTTCTTACAAGCGGAATAGTAATTTGTTTAAGTGGATTCGCGGTTTTCGATAACG : 1306817 255 : spLysSer<-><-><-><->LysTyrValThrGlnIleValLeuSerLeuValGln : 268 || !! |||||||||:!! ! :!: !! !! !! !:!!||| spAlaArgThrAspIleLeuLysTyrValSerTyrLeuSerSerIleTrpLeuGln 1306816 : ACGCCCGTACCGATATTCTGAAATACGTATCTTATTTGTCCTCGATTTGGTTGCAA : 1306763 269 : LeuPheLeuCysAsnTrpProProAspValLeuGlnAsnGluSerGlnAlaValAl : 287 |||!!.|||!! !! !||| !!!::!!||| .!.|||||| !! !:!!!. LeuLeuLeuTrpCysLeuProGlyGluIleLeuValGlnGluSerLeuGluIleGl 1306762 : CTTTTGTTATGGTGTTTGCCCGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGG : 1306706 288 : aTyrAlaAlaTyrPhe<->MetProTrpTyrArgCysSerArgAspValLysLysS : 305 !:!!!.!!.!|||!!. :!:|||||||||!.!! !!! ! ! !:!!!:!! yHisValValTyrLeuAsnValProTrpTyrAsnLeuProProIleTyrGlnArgL 1306705 : ACACGTAGTCTACTTAAATGTACCATGGTACAATTTGCCGCCAATTTACCAGAGAA : 1306649 306 : erThrGluIleIleIleMetArgGlyGlnArgValValArgLeuThrAlaGlyAsn : 323 .! ! !!:!!:|||:!:|||!.!|||!:! ! !!!!:!!|||||| !!.. ysLeuCysMetMetIleLeuArgAlaGlnGlnTyrCysSerIleThrAlaLeuThr 1306648 : AACTTTGCATGATGATCCTTAGGGCACAACAATATTGCAGCATCACGGCATTAACG : 1306595 324 : PheValAspLeuSerLeuGluThrPheIleArg >>>> Target Intron 1 : 335 ||| ! ||||||:!!.!.|||!!.! !!! 629 bp PheArgThrLeuSerIleHisThrLeuThrSer++ 1306594 : TTTCGAACGTTGTCTATTCACACGTTAACGAGCgt..................... : 1306557 336 : >>>> MetValSerSerAlaLeuSerPhePheThrLeuLeuArgSerIleGlu : 350 :!: !!!:!!!!||| !|||!:!|||||||||||||||..!!!::!! ++ValPheAsnThrAlaAlaSerTyrPheThrLeuLeuArgGlnMetGln 1306556 : ....agGTATTCAATACAGCCGCTTCATATTTCACTTTGCTGCGACAAATGCAA : 1305883 vulgar: gi|528747914|gb|AGS43052.1| 216 350 . KQ414608.1 1306928 1305882 - 109 M 40 120 G 0 12 M 36 108 G 0 3 M 42 126 5 0 2 I 0 625 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1305883 1306928 109 - . gene_id 1 ; sequence gi|528747914|gb|AGS43052.1| ; gene_orientation + KQ414608.1 exonerate:protein2genome:local cds 1306560 1306928 . - . KQ414608.1 exonerate:protein2genome:local exon 1306560 1306928 . - . insertions 15 ; deletions 0 KQ414608.1 exonerate:protein2genome:local splice5 1306558 1306559 . - . intron_id 1 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1305931 1306559 . - . intron_id 1 KQ414608.1 exonerate:protein2genome:local splice3 1305931 1305932 . - . intron_id 0 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1305883 1305930 . - . KQ414608.1 exonerate:protein2genome:local exon 1305883 1305930 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1305883 1306928 109 - . alignment_id 1 ; Query gi|528747914|gb|AGS43052.1| ; Align 1306929 217 120 ; Align 1306797 257 108 ; Align 1306686 293 126 ; Align 1305931 335 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747922|gb|AGS43056.1| odorant receptor Or2g [Cephus cinctus] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 141 -> 204 Target range: 204023 -> 204212 142 : ArgValLeuProValThrLeuTrpIleAsnIleProValThrThrThrProTyrPheG : 161 !:!:!!!!!|||||| ! ::: ::::!! !||||||||||||| LysLeuPheProValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheG 204024 : AAGCTTTTTCCGGTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTG : 204081 162 : luIleCysPheValMetGluSerLeuThrIleValHisIleGlyIleCysPhePheCy : 180 ||||| |||:!!:!::!!! ! !|||:!!||| !!:!.!:!!|||!:!.!! ! luIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGl 204082 : AGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGG : 204138 181 : sPheAspIlePheLeuCysIleLeuAsnIleHisAlaAlaGlyGlnPheLysMetLeu : 199 ! !!|||! !|||!!! ! ||||||! !:!!||| !..!||||||!!.:!!! ||| yValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeu 204139 : TGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTT : 204195 200 : GlnHisArgPheAla : 204 !:: |||.!!||| ArgThrArgLeuAla 204196 : CGTACACGACTTGCA : 204212 vulgar: gi|528747922|gb|AGS43056.1| 141 204 . KQ414617.1 204023 204212 + 114 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204024 204212 114 + . gene_id 1 ; sequence gi|528747922|gb|AGS43056.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204024 204212 . + . KQ414617.1 exonerate:protein2genome:local exon 204024 204212 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204024 204212 114 + . alignment_id 1 ; Query gi|528747922|gb|AGS43056.1| ; Align 204024 142 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747936|gb|AGS43063.1| odorant receptor Or3d [Cephus cinctus] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 175 -> 250 Target range: 204008 -> 204233 176 : GlnIleAspAlaSerAsnAlaPheProMetProSerTrpTyrProPheGluMetHisS : 195 :!!! !:!! !!.!!!. !||||||:!!|||::::::||| ::::::::: !. GluThrAsnIleLysLysLeuPheProValProThrTyrTyrIleTyrAspIleSerG 204009 : GAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttattatatttacgatataTCTG : 204066 196 : erThrProAsnTyrGluMetLeuLeuThrPheGlnValIleIleGlyCysSerIleAl : 214 .!|||||| !!!:!|||!!::!!!!! !.!!|||:!! !! ! ! ! !!!:|| luThrProTyrPheGluIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAl 204067 : AAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGC : 204123 215 : aValSerSerAlaAlaValAspSerLeuLeuValThrAlaValPheHisValCysGly : 233 |:!!!!!! ! !!.!||||||!:!!!!!!!! !! ! !:!!.!!|||:!!|||||| aLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeuIleLeuHisIleCysGly 204124 : ACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGC : 204180 234 : GlnLeuGluIleLeuArgLysTyrPheGluAsnLeuHisSerSerGluThr : 250 |||||||||! !||||||! ! .!!! !|||:!! ! !! !|||||| GlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysHisLeuGluThr 204181 : CAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAACATTTGGAAACT : 204233 vulgar: gi|528747936|gb|AGS43063.1| 175 250 . KQ414617.1 204008 204233 + 117 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204009 204233 117 + . gene_id 1 ; sequence gi|528747936|gb|AGS43063.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204009 204233 . + . KQ414617.1 exonerate:protein2genome:local exon 204009 204233 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204009 204233 117 + . alignment_id 1 ; Query gi|528747936|gb|AGS43063.1| ; Align 204009 176 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747944|gb|AGS43067.1| odorant receptor Or3h, partial [Cephus cinctus] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 309 -> 376 Target range: 204733 -> 204934 310 : LeuTyrAlaHisCysThrValGlyGluSerLeuValGlnGluSerThrArgValTyrG : 329 |||||| ! ::: ... |||||| ! !:!!||| !..!||||||! LeuTyrTyrLeuSerSerPheSerIleSerLeuSerIleLysSerGluGluValTyrV 204734 : ctatACTACTTgtcttcattttcaatttctttgtCGATAAAGTCCGAAGAAGTATACG : 204791 330 : luAlaTrpTyrAspCysAsnTrpTyrAsnMetProThrGluAsnAlaArgLeuIleIl : 348 ||| !|||!!:|||.!.|||! |||:!! !:!!.!.!!.|||!:! !:!:|| alAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsnLysAlaLysSerLeuIl 204792 : TTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAACAAGGCGAAAAGTTTGAT : 204848 349 : eLeuCysMetSerArgSerGlnLysProLeuCysLeuThrSerGlyLysPheGlyIle : 367 |||| !|||:!!|||:!!|||!:!|||||||||||||||:::||||||... eLeuIleMetAlaArgAlaGlnArgProLeuCysLeuThrAlaGlyLysLeuPhePro 204849 : TTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGcaggaaaattatttcct : 204905 368 : PheCysLeuSerThrLeuThrAspVal : 376 ... :!! !|||!!! !:!!||| MetThrMetLeuThrPheCysAsnVal 204906 : atGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: gi|528747944|gb|AGS43067.1| 309 376 . KQ414617.1 204733 204934 + 130 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204734 204934 130 + . gene_id 1 ; sequence gi|528747944|gb|AGS43067.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204734 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204734 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204734 204934 130 + . alignment_id 1 ; Query gi|528747944|gb|AGS43067.1| ; Align 204734 310 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747920|gb|AGS43055.1| odorant receptor Or2f [Cephus cinctus] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 262 -> 319 Target range: 204763 -> 204934 263 : LeuSerSerGluSerThrAsnIleAlaPheAlaPheTyrAsnCysSerTrpTyrAsnT : 282 ||||||! !:!!||| !.!.:!! ! !!||| |||.!.|||..!|||! |||! LeuSerIleLysSerGluGluValTyrValAlaAlaTyrGluCysGluTrpLeuAsnL 204764 : ttgtCGATAAAGTCCGAAGAAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATT : 204821 283 : yrGluLysSerIleGlySerSerIleGlnIleAlaIleAlaArgSerGlnAsnProVa : 301 :!!..!!:!! !.!!.!|||:!: :!! !!!:||||||:!!|||!..|||:! euLysSerAsnLysAlaLysSerLeuIleLeuIleMetAlaArgAlaGlnArgProLe 204822 : TGAAATCGAACAAGGCGAAAAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCT : 204878 302 : lAlaLeuThrAlaGlyLysPheValIleMetSerLeuGluThrPheThrSerIle : 319 !..!|||||||||||||||... |||!!!:!! !|||||| !!:!:!! uCysLeuThrAlaGlyLysLeuPheProMetThrMetLeuThrPheCysAsnVal 204879 : CTGTTTAACCGcaggaaaattatttcctatGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: gi|528747920|gb|AGS43055.1| 262 319 . KQ414617.1 204763 204934 + 109 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204764 204934 109 + . gene_id 1 ; sequence gi|528747920|gb|AGS43055.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204764 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204764 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204764 204934 109 + . alignment_id 1 ; Query gi|528747920|gb|AGS43055.1| ; Align 204764 263 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747928|gb|AGS43059.1| odorant receptor Or2j [Cephus cinctus] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 60 -> 153 Target range: 203930 -> 204209 61 : PheValTyrLeuPheThrAsnLeuValLeuPheAlaValLeuAspTyrIlePheAlaP : 80 !:!!.!! :!!|||||| :!!:!!!!!.!. !|||||| ! ! ! ! TyrAlaLeuIlePheThrAlaValMetPheMetIleValLeuProArgThrGlyIleT 203931 : TATGCGTTAATATTTACTGCAGTAATGTTCATGATAGTCCTACCAAGAACCGGTATTA : 203988 81 : roValValGluAsnPheHisArgAsnGluThrAspArgIleLeuProPheThrLeuTr : 99 !!..! ! ! :!!..!!.!.!.! ! ! !:!:!!!!!||| ! ! :: hrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProThrTy 203989 : CCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaactta : 204045 100 : pValAsnLeuProValThrValThrProTyrTyrGluIleThrTyrThrIleGlnSer : 118 : ::::!!! !|||||||||!:!||||||! !!:! !:!!|||! ! rTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGlnMet 204046 : ttatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATG : 204102 119 : LeuSerThrLeuTyrThrGlyIleCysThrCysPhePheAspAsnPheIleSerValL : 138 !!!! !:!!! ! !!.!:!!||| ! ! ! !!|||||||||.!!.!!:!!| AlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleL 204103 : GCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATAT : 204162 139 : euAsnIleTyrValAlaGlyGlnLeuGluIleLeuGlyHisArgVal : 153 ||! !:!!:!!:!!..!||||||||||||! !||| !! |||:!! euIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeu 204163 : TGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTT : 204209 vulgar: gi|528747928|gb|AGS43059.1| 60 153 . KQ414617.1 203930 204209 + 100 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203931 204209 100 + . gene_id 1 ; sequence gi|528747928|gb|AGS43059.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203931 204209 . + . KQ414617.1 exonerate:protein2genome:local exon 203931 204209 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 203931 204209 100 + . alignment_id 1 ; Query gi|528747928|gb|AGS43059.1| ; Align 203931 61 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747926|gb|AGS43058.1| odorant receptor Or2i [Cephus cinctus] Target: KQ414667.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold102, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 352 -> 405 Target range: 801758 -> 801448 353 : GlyArgAlaLeuArgGlnGlyMetThrIleMetValMetArgSerTyrLysProCysS : 372 |||!!! !!!! !|||.!!:!: !||||||:!!||||||||| ! !||||||! GlySerArgPheSerGlnSerLeuGlnIleMetMetMetArgSerArgIleProCysL 801758 : GGTAGTCGTTTCTCTCAGAGTCTTCAGATCATGATGATGCGCTCGAGGATACCATGCA : 801701 373 : erLeuThrValGlyLysPheCysProMetAsnLeuGlnValPheSerSer >>>> T : 389 .!:!!|||!.!!.!||||||! ! !|||::!|||:!! !||||||!.! ysIleThrAlaAlaLysPheTyrSerMetSerLeuGluSerPheSerLys++ 801700 : AGATAACCGCCGCTAAATTCTACAGCATGTCCTTGGAGAGCTTCTCGAAGgt...... : 801648 390 : arget Intron 1 >>>> ValLeuSerThrSerLeuSerTyrPheThrValLeuA : 401 151 bp |||||||||||||||!!!||||||||||||||||||! ++ValLeuSerThrSerPheSerTyrPheThrValLeuT 801647 : ...................agGTACTCAGCACGTCTTTCTCCTACTTCACGGTCCTCA : 801463 402 : rgSerMetAsnGlu : 405 !:!!! !!.!!: hrAlaThrLysAsp 801462 : CAGCCACCAAAGAC : 801449 vulgar: gi|528747926|gb|AGS43058.1| 352 405 . KQ414667.1 801758 801448 - 122 M 36 108 5 0 2 I 0 147 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414667.1 exonerate:protein2genome:local gene 801449 801758 122 - . gene_id 1 ; sequence gi|528747926|gb|AGS43058.1| ; gene_orientation + KQ414667.1 exonerate:protein2genome:local cds 801651 801758 . - . KQ414667.1 exonerate:protein2genome:local exon 801651 801758 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 801649 801650 . - . intron_id 1 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801500 801650 . - . intron_id 1 KQ414667.1 exonerate:protein2genome:local splice3 801500 801501 . - . intron_id 0 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801449 801499 . - . KQ414667.1 exonerate:protein2genome:local exon 801449 801499 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local similarity 801449 801758 122 - . alignment_id 1 ; Query gi|528747926|gb|AGS43058.1| ; Align 801759 353 108 ; Align 801500 389 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747912|gb|AGS43051.1| odorant receptor Or2b [Cephus cinctus] Target: KQ414667.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold102, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1144 Query range: 0 -> 387 Target range: 806042 -> 801445 1 : MetAspValProLeuHisGlyGlyGluGluTyrAspGlnPheIleLysProValMetA : 20 |||:!!!.!! !! !:!!..!..!:!!|||||||||:!!.!.|||!:!|||:!!||| MetAsnAlaArgProTyrAsnAsnLysGluTyrAspGluLeuIleArgProIleMetL 806042 : ATGAATGCTCGACCGTACAATAACAAGGAATACGATGAACTGATCAGACCCATCATGT : 805985 21 : snThrMetGlnIleIleSerIleTrpProLeuAlaAlaAspCysGlySerTyrGluTy : 39 ||| :!!||||||||||||||||||||||||! !:!! !!!.!!!! ! euThrAlaLysIleIleSerIleTrpProLeuAlaGluAsnSerAlaThrGlyAlaIl 805984 : TAACCGCAAAGATCATTTCCATCTGGCCGTTGGCAGAGAATAGCGCTACGGGGGCTAT : 805928 40 : rLeuLeuArgIleCysHisGlnIleLeuMetPhePheVal >>>> Target Intr : 53 |||!!!|||! !! !||| !:!!! !|||||||||:!! 684 bp eLeuPheArgArgPheHisLeuLeuCysMetPhePheLeu++ 805927 : ATTGTTCAGGAGATTCCACTTGCTCTGCATGTTTTTTCTGgt................ : 805884 54 : on 1 >>>> ThrGlyThrMetSerIleValValThrAlaAspValIleHisAsnTr : 68 ..!! !..!|||||||||!.!|||||||||||||||||||||||| ++ValValValMetSerIleAlaValThrAlaAspValIleHisAsnIl 805883 : .........agGTGGTGGTGATGTCGATCGCGGTGACGGCCGACGTGATCCACAATAT : 805157 69 : pGlyAsnMetAspThrAlaThrGluCysSerLeuIleAlaSerAlaPheValLeuCys : 87 ! !:!!:!!||| !||||||||||||:!!||||||..!!!!|||||| !|||||| eAspAspLeuAspGluAlaThrGluCysAlaLeuIleCysThrAlaPheTyrLeuCys 805156 : CGACGATTTGGACGAAGCGACCGAGTGTGCGTTGATTTGCACAGCATTTTACCTTTGC : 805100 88 : PheLeuArgLeuMetValTyrThrTyrHisGlnLysAspMetArgTyrValValGluT : 107 !!:!!|||:!!:!!||||||.!! !|||||||||||||||! !|||||||||.!.| ValValArgMetValValTyrAlaIleHisGlnLysAspMetLeuTyrValValAsnT 805099 : GTTGTTCGCATGGTGGTGTACGCGATTCATCAGAAAGATATGCTTTACGTAGTGAACA : 805040 108 : hrMetArgSerAspTrpAlaAspAlaSerTyrGluGluLysGlnValLeuLysGluLy : 126 ||||||||! !||||||.!!!!::!!||| ! |||!!:::: :!!||| !||||| hrMetArgIleAspTrpThrGluSerSerLysGluAspArgValIleLeuAlaGluLy 805039 : CAATGAGGATCGATTGGACTGAATCTTCAAAAGAGGATCGTGTTATTCTAGCGGAGAA : 804983 127 : sCysAspPheAlaPheArgLeuAlaLysTyrPheIleAlaThrValAlaIleThrIle : 145 | ||||||||||||||||||||||||||||||::!||||||||| !|||||| sThrMetPheAlaPheArgLeuAlaLysTyrPheIleSerThrValAlaAlaThrIle 804982 : AACGATGTTCGCCTTTCGTCTTGCCAAGTACTTTATCAGTACCGTGGCTGCAACTATC : 804926 146 : AlaPhePheMetThrValProMetLeuGlu >>>> Target Intron 2 >>>> : 156 !.!.!.|||||| !:!!|||!!:|||||| 728 bp ValMetPheMetCysIleProIleLeuGlu++ + 804925 : GTGATGTTCATGTGCATTCCGATTCTAGAGgt.........................a : 804167 157 : ThrTyrIleLeuHisSerGluGluLysIleLeuProPheArgGlyTyrPhePheLeu : 174 ! !|||:!:||| .!!:!!!!:|||:!:||||||||||||||||||||||||||| +IleTyrValLeu---GlyLysAspLysValLeuProPheArgGlyTyrPhePheLeu 804166 : gATTTACGTGCTT---GGTAAGGACAAAGTGCTCCCATTCCGAGGTTACTTCTTCCTC : 804114 175 : AsnHisThrLeuSerProAsnTyrGluMetIleTyrIlePheGluIleIleAlaGlyS : 194 |||!!.|||:!!||||||! !!:!||| :!:|||:!:|||.!.:!:! !||||||. AsnGlnThrValSerProIlePheGluCysLeuTyrLeuPheAsnValThrAlaGlyG 804113 : AATCAAACCGTGTCGCCGATCTTCGAGTGCTTGTACCTGTTCAACGTGACCGCTGGTG : 804054 195 : erPheGlyGlySerMetIleAlaGlyValThrSerPheAsnLeuValValIleMetHi : 213 !!|||||||||!!!|||||||||.!! !||||||||||||||||||||||||||||| lyPheGlyGlyThrMetIleAlaSerCysThrSerPheAsnLeuValValIleMetHi 804053 : GATTCGGCGGTACGATGATCGCCAGTTGCACCAGTTTCAATCTGGTGGTAATAATGCA : 803997 214 : sGlyAlaAlaArgPheSerLeuLeuGlnLysLysLeuGluSerLeuAsnArgAsnAsp : 232 ||||:!!|||!:!|||:!!:!!|||!:!!:!!:!||||||:!!|||!:! !!!!.||| sGlySerAlaLysPheAlaValLeuArgArgArgLeuGluAlaLeuSerGlyLysAsp 803996 : CGGCTCGGCCAAGTTTGCTGTTCTACGGAGAAGATTGGAGGCTCTCAGCGGCAAGGAT : 803940 233 : ProAspValAsnLysLeuMetValLysCysIleLysLeuHisGlnAspAlaIle{Ly} : 251 |||:!! !!.!! :!!|||! ! ! ! :!:! ! !||||||!!:||||||{:!} ProAsnSerThrThrValMetGlyAspLeuValIleArgHisGlnGluAlaIle{Gl} 803939 : CCTAATTCTACTACTGTTATGGGGGATTTAGTGATTCGCCACCAGGAAGCAATA{GA} : 803883 252 : >>>> Target Intron 3 >>>> {s}PheAlaAspAlaLeuGluAspIleIl : 260 696 bp {!}!:!||||||||||||||| ||||| ++ ++{u}TyrAlaAspAlaLeuGluArgIleIl 803882 : gt.........................ag{G}TACGCAGATGCACTGGAAAGGATCAT : 803160 261 : eAsnValValAlaLeuGlyGlnPheValThrSerThrGlyLeuValCysPheAlaGly : 279 |||||||:!!||||||||||||||||||! !||||||||||||:!!|||||||||||| eAsnValLeuAlaLeuGlyGlnPheValIleSerThrGlyLeuIleCysPheAlaGly 803159 : AAATGTTCTGGCTTTGGGACAATTCGTCATTAGCACAGGTCTGATCTGCTTCGCGGGA : 803103 280 : PheGlnLeuThrSer >>>> Target Intron 4 >>>> MetLeuGluAspAr : 289 ||||||:!!|||||| 61 bp |||:!!||||||!: PheGlnIleThrSer++ ++MetMetGluAspLy 803102 : TTCCAGATCACCTCGgt.........................agATGATGGAGGATAA : 803012 290 : gGlyArgLeuMetLysTyrSerThrPheLeuAsnSerAlaIleLeuGluLeuPheIle : 308 !||||||||||||||||||||||||||||||||||||||||||||||||||||||!!: sGlyArgLeuMetLysTyrSerThrPheLeuAsnSerAlaIleLeuGluLeuPheMet 803011 : AGGACGGCTGATGAAATATTCCACCTTCTTGAACTCCGCCATTCTCGAGCTGTTCATG : 802955 309 : PheSerPheSerGlyAsnGluLeuIleValGlu >>>> Target Intron 5 >> : 320 ||||||||||||||||||! ||||||! !||| 1119 bp PheSerPheSerGlyAsnGlyLeuIleAspGlu++ 802954 : TTCAGCTTCAGCGGAAACGGCCTGATAGACGAGgt....................... : 802917 321 : >> SerGluAlaValGlyAspAlaAlaTyrArgSerAspTrpAlaSerSerSerPhe : 337 |||!!:|||||||||!!::!!|||||| !!|||! ||| !.!!||| !!||| ++SerAspAlaValGlyGluSerAlaTyrGlySerGlyTrpIleGlySerArgPhe 802916 : ..agAGCGACGCGGTAGGCGAGTCAGCTTATGGCAGCGGATGGATCGGTAGTCGTTTC : 801749 338 : ThrGlnSerLeuArgIleLeuMetMetArgAlaThrLeuProSerArgIleThrAlaA : 357 :!!|||||||||!:!|||:!!|||||||||:!!! !:!!|||!!!!:!|||||||||| SerGlnSerLeuGlnIleMetMetMetArgSerArgIleProCysLysIleThrAlaA 801748 : TCTCAGAGTCTTCAGATCATGATGATGCGCTCGAGGATACCATGCAAGATAACCGCCG : 801689 358 : laLysPheTyrSerMetSerLeuGluSerPheSerAla >>>> Target Intron : 370 ||||||||||||||||||||||||||||||||||| ! 151 bp laLysPheTyrSerMetSerLeuGluSerPheSerLys++ 801688 : CTAAATTCTACAGCATGTCCTTGGAGAGCTTCTCGAAGgt.................. : 801648 371 : 6 >>>> ValLeuSerThrSerPheSerTyrPheThrValLeuLysAlaValSerG : 386 ||||||||||||||||||||||||||||||||||||! !|||..!!.!! ++ValLeuSerThrSerPheSerTyrPheThrValLeuThrAlaThrLysA 801647 : .......agGTACTCAGCACGTCTTTCTCCTACTTCACGGTCCTCACAGCCACCAAAG : 801451 387 : luGlu : 387 !:!!: spAsp 801450 : ACGAC : 801446 vulgar: gi|528747912|gb|AGS43051.1| 0 387 . KQ414667.1 806042 801445 - 1144 M 52 156 5 0 2 I 0 680 3 0 2 M 103 309 5 0 2 I 0 724 3 0 2 M 4 12 G 1 0 M 90 270 S 0 2 5 0 2 I 0 692 3 0 2 S 1 1 M 33 99 5 0 2 I 0 57 3 0 2 M 35 105 5 0 2 I 0 1115 3 0 2 M 50 150 5 0 2 I 0 147 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414667.1 exonerate:protein2genome:local gene 801446 806042 1144 - . gene_id 1 ; sequence gi|528747912|gb|AGS43051.1| ; gene_orientation + KQ414667.1 exonerate:protein2genome:local cds 805887 806042 . - . KQ414667.1 exonerate:protein2genome:local exon 805887 806042 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 805885 805886 . - . intron_id 1 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 805203 805886 . - . intron_id 1 KQ414667.1 exonerate:protein2genome:local splice3 805203 805204 . - . intron_id 0 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 804894 805202 . - . KQ414667.1 exonerate:protein2genome:local exon 804894 805202 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 804892 804893 . - . intron_id 2 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 804166 804893 . - . intron_id 2 KQ414667.1 exonerate:protein2genome:local splice3 804166 804167 . - . intron_id 1 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 803882 804165 . - . KQ414667.1 exonerate:protein2genome:local exon 803882 804165 . - . insertions 0 ; deletions 1 KQ414667.1 exonerate:protein2genome:local splice5 803880 803881 . - . intron_id 3 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 803186 803881 . - . intron_id 3 KQ414667.1 exonerate:protein2genome:local splice3 803186 803187 . - . intron_id 2 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 803086 803185 . - . KQ414667.1 exonerate:protein2genome:local exon 803086 803185 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 803084 803085 . - . intron_id 4 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 803025 803085 . - . intron_id 4 KQ414667.1 exonerate:protein2genome:local splice3 803025 803026 . - . intron_id 3 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 802920 803024 . - . KQ414667.1 exonerate:protein2genome:local exon 802920 803024 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 802918 802919 . - . intron_id 5 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801801 802919 . - . intron_id 5 KQ414667.1 exonerate:protein2genome:local splice3 801801 801802 . - . intron_id 4 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801651 801800 . - . KQ414667.1 exonerate:protein2genome:local exon 801651 801800 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 801649 801650 . - . intron_id 6 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801500 801650 . - . intron_id 6 KQ414667.1 exonerate:protein2genome:local splice3 801500 801501 . - . intron_id 5 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801446 801499 . - . KQ414667.1 exonerate:protein2genome:local exon 801446 801499 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local similarity 801446 806042 1144 - . alignment_id 1 ; Query gi|528747912|gb|AGS43051.1| ; Align 806043 1 156 ; Align 805203 53 309 ; Align 804166 156 12 ; Align 804154 161 270 ; Align 803185 252 99 ; Align 803025 285 105 ; Align 801801 320 150 ; Align 801500 370 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747944|gb|AGS43067.1| odorant receptor Or3h, partial [Cephus cinctus] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 323 -> 376 Target range: 1387619 -> 1387778 324 : SerThrArgValTyrGluAlaTrpTyrAspCysAsnTrpTyrAsnMetProThrGl : 342 ||| !|||:!! :!!:!: |||::: ||||||:!!:!: ! !!.. SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 343 : uAsnAlaArgLeuIleIleLeuCysMetSerArgSerGlnLysProLeuCysLeuT : 361 !.!.||||||:::::::::||| ::: |||||||||||| !||| |||| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 362 : hrSerGlyLysPheGlyIlePheCysLeuSerThrLeuThrAspVal : 376 ||:!!|||||||||! !! !.!!! !|||:!!.!!!!!.!!:!:||| hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPheAlaAsnVal 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTTGCTAAtgta : 1387778 vulgar: gi|528747944|gb|AGS43067.1| 323 376 . KQ414716.1 1387619 1387778 + 100 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387778 100 + . gene_id 1 ; sequence gi|528747944|gb|AGS43067.1| ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387778 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387778 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387778 100 + . alignment_id 1 ; Query gi|528747944|gb|AGS43067.1| ; Align 1387620 324 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747930|gb|AGS43060.1| odorant receptor Or3a [Cephus cinctus] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 345 Query range: 295 -> 410 Target range: 1345081 -> 1345699 296 : MetAlaThrAlaLeuAsnLysThrTyrSerSerLeuLeuLeuValGlnThrMetGl : 314 :!!||| ! !||| :!!|||!:!|||!!!|||:!!!!!:!!||||||:!:|| LeuAlaGlyIleLeuAlaGluThrPheSerThrLeuMetPheIleGlnThrLeuGl 1345082 : TTGGCGGGCATTTTGGCAGAGACGTTTAGTACTCTGATGTTTATACAAACTTTAGG : 1345136 315 : yLeuSerPheValIleCysIleValAlaPheGluLeuLeuThr >>>> Target : 329 |||| ||| :::|||||||||!.!|||:!!||||||||| 1 yLeuIlePheSerLeuCysIleValValPheGlnLeuLeuThr++ 1345137 : gttgatattttctttatgCATCGTCGTCTTTCAATTACTCACGgt........... : 1345183 330 : Intron 1 >>>> MetAlaGluValGlyGluGluThrAsnThrLeuSerPheI : 342 33 bp |||::!||| !||||||!!:! !||||||:!! !|||| ++MetSerGluSerGlyGluAspMetAsnThrIleHisPheI 1345184 : ..............agATGAGCGAATCGGGCGAAGACATGAACACGATACACTTTA : 1345353 343 : leIleTyrSerLeuAlaValValThrLeuLeuPheSerTyrCysPheLeuGlyGlu : 360 |||||||||||! !||||||:!! !||| !|||!!!|||||||||||||||||| leIleTyrSerCysAlaValIleLeuLeuAlaPheCysTyrCysPheLeuGlyGlu 1345354 : TAATTTATTCCTGCGCCGTTATATTACTAGCATTCTGCTATTGTTTCTTGGGAGAG : 1345407 361 : CysLeuIleHisGlu >>>> Target Intron 2 >>>> SerSerSerIle : 369 |||||||||:!!||| 140 bp ||||||..!!!: CysLeuIleAsnGlu++ ++SerSerGluMet 1345408 : TGCCTGATTAACGAGgt.........................agAGTTCTGAAATG : 1345574 370 : HisAsnAlaCysTyrPheSerAsnTrpTyrArgLeuProProAspLeuAlaArgPr : 388 !!..!.|||||||||||||||||||||||| !|||||| ! ! ! !.!!||| ! GlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLysTyrThrArgSe 1345575 : CAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAAATACACGCGATC : 1345631 389 : oIleIleIleProIleMetArgSerArgLysProLeuHisLeuThrAlaGlyGlnP : 407 !:!!|||.!! !||| ||||||!:!||||||! !:!!||||||||||||:!!| rLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuThrAlaGlyLysP 1345632 : GTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAACAGCTGGCAAGT : 1345688 408 : heTyrValPhe : 410 ||||||||||| heTyrValPhe 1345689 : TCTACGTGTTC : 1345699 vulgar: gi|528747930|gb|AGS43060.1| 295 410 . KQ414782.1 1345081 1345699 + 345 M 33 99 5 0 2 I 0 129 3 0 2 M 37 111 5 0 2 I 0 136 3 0 2 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345082 1345699 345 + . gene_id 1 ; sequence gi|528747930|gb|AGS43060.1| ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345082 1345180 . + . KQ414782.1 exonerate:protein2genome:local exon 1345082 1345180 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345181 1345182 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345181 1345313 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345312 1345313 . + . intron_id 0 ; splice_site "AG" KQ414782.1 exonerate:protein2genome:local cds 1345314 1345424 . + . KQ414782.1 exonerate:protein2genome:local exon 1345314 1345424 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345425 1345426 . + . intron_id 2 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345425 1345564 . + . intron_id 2 KQ414782.1 exonerate:protein2genome:local splice3 1345563 1345564 . + . intron_id 1 ; splice_site "AG" KQ414782.1 exonerate:protein2genome:local cds 1345565 1345699 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345699 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345082 1345699 345 + . alignment_id 1 ; Query gi|528747930|gb|AGS43060.1| ; Align 1345082 296 99 ; Align 1345314 329 111 ; Align 1345565 366 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747930|gb|AGS43060.1| odorant receptor Or3a [Cephus cinctus] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 228 Query range: 51 -> 193 Target range: 1342079 -> 1342511 52 : LeuAsnMetTyrLeuThrIleAspSerAspIleLeuTrpLeuSerLysArgValLe : 70 ||||||:!! ! ||| ! !|||..!:!!:!:|||! !! !|||||||||:!!|| LeuAsnValGluLeuPheTyrAspGluAsnValLeuSerTrpSerLysArgLeuLe 1342080 : TTGAACGTGGAACTGTTCTACGACGAGAACGTGCTATCGTGGAGCAAACGTCTCCT : 1342134 71 : uSerLeuAlaGlyIleTrpProGluSerProAsnAsnPheArgPhePheIleTyrL : 89 |.!!|||:!!|||:!:||||||!!:!:!! !|||:!: |||||||||...|||: uGlyLeuSerGlyLeuTrpProAspAsnArgAsnAspValArgPhePhePheTyrI 1342135 : CGGCTTATCCGGCCTGTGGCCGGATAATCGCAACGAcgtacgatttttcttctacA : 1342191 90 : euLeuTyrLeuSerLeuPheAsnCysAlaGluPheAlaAlaLeuValLeuAsnLeu : 107 !! !|||:!! !:!!|||!..!! !|||.!.!.!.!!|||:!!! !|||:!! leSerTyrValValIlePheThrTrpLeuGluMetValThrLeuLeuGlnAsnIle 1342192 : TTAGCTACGTGGTGATCTTCACGTGGCTGGAGATGGTGACGCTGCTGCAGAATATA : 1342245 108 : TyrTrpMetAsnPheAspLysSerValArgAsnMetThrGluSerIleProThrAl : 126 :!! :!!.!!!!:||||||::::::|||:::||| !|||.!!|||||| His------AspLeuGluLysSerLeuLysAsnIleThrLeuSerPheProThrIl 1342246 : CAC------GACCTTGAGaagtcgttgaaaaatatcacgCTATCGTTCCCGACCAT : 1342296 127 : aMetValIleLeuLysThrAlaMetPheArgArgAsnMetGlnLeuLeuLeuProL : 145 !:!!:!!:!:||||||.!!!.!|||||||||! !||||||!!.|||:!!||||||| eLeuIleValLeuLysAlaValMetPheArgLeuAsnMetHisLeuValLeuProL 1342297 : CTTGATAGTGCTGAAGGCCGTGATGTTTCGGCTGAACATGCATCTCGTCCTGCCGT : 1342353 146 : euLeuSerGluValArgAlaAsp<-><-><-><->LysPheSerValGluGluGlu : 159 |||||..!! !|||||| !||| !!:! !! !:!!|||||| euLeuGluAlaValArgLysAspValLysGlnGlyLeuTyrArgSerGlnGluGlu 1342354 : TGCTCGAGGCAGTGAGAAAGGACGTGAAACAGGGACTGTATCGGTCGCAGGAGGAA : 1342407 160 : ProGlyIleAlaTrpLeuTyrAsnIleMetGlyLysLeuTyrThrArgLeuSerVa : 178 ! !!! !.! ! !|||!:!:!: !.!! |||!:!:!!! !! !|||!. ArgArgThrValValTrpTyrSerValAlaAlaThrLeuPheSerThrSerSerAl 1342408 : AGGCGAACGGTTGTATGGTACAGCGTGGCCGCCACCTTATTTTCCACGTCGTCGGC : 1342464 179 : lValLeuIlePheIleValThrThrMetLeuTyrAlaValProLeu : 193 !:!!! !:!:|||.!!||| !!|||:!:!!!|||.!! !|||:!! aMetSerLeuPhePheValProThrLeuPheTyrThrLysProIle 1342465 : CATGTCTTTGTTCTTCGTGCCCACGTTATTTTATACGAAGCCGATC : 1342511 vulgar: gi|528747930|gb|AGS43060.1| 51 193 . KQ414782.1 1342079 1342511 + 228 M 57 171 G 2 0 M 42 126 G 0 12 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1342080 1342511 228 + . gene_id 2 ; sequence gi|528747930|gb|AGS43060.1| ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1342080 1342511 . + . KQ414782.1 exonerate:protein2genome:local exon 1342080 1342511 . + . insertions 12 ; deletions 2 KQ414782.1 exonerate:protein2genome:local similarity 1342080 1342511 228 + . alignment_id 2 ; Query gi|528747930|gb|AGS43060.1| ; Align 1342080 52 171 ; Align 1342251 111 126 ; Align 1342389 153 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747944|gb|AGS43067.1| odorant receptor Or3h, partial [Cephus cinctus] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 173 Query range: 155 -> 253 Target range: 1344648 -> 1344942 156 : GluSerGluSerThrAsnSerThrLeuThrPheGluLeuProTyrArgPheTyrLe : 174 ...!!!|||! !!:!|||!!!|||||| !!!:!||||||||| !:! ! !!! SerThrGluPheSerAsnCysThrLeuProTyrGluLeuProMetLysValAsnHi 1344649 : TCCACAGAGTTCAGTAACTGTACTCTTCCTTACGAGCTACCAATGAAAGTGAACCA : 1344703 175 : uLeuTyrAsnValAsnAspThrHisThrTyrMetIleThrTyrLeuSerHisLeuP : 193 !||||||.!.|||!..!!:..!!..|||||| :!: !! !:!!! ! !:!!| sLeuTyrGluValThrGluValArgThrTyrAlaLeuPheCysValTyrPheValP 1344704 : CCTGTACGAAGTGACAGAGGTGCGGACGTACGCTTTGTTCTGCGTTTACTTCGTAC : 1344760 194 : roPheValPheValSerGlyPheGlyGlnSerAlaAlaAspCysLeuMetValThr : 211 || !.!.:!! ! !.!!||| !!!!!.!|||||| !!|||:!:|||||| roThrSerMetLeuLeuThrIleGlyAlaThrGlyAlaAspSerLeuLeuValThr 1344761 : CGACGAGCATGTTACTAACAATCGGTGCAACTGGCGCCGACAGTCTTCTAGTCACC : 1344814 212 : LeuValPheHisValCysGlyGlnLeuSerValLeuThrLeuArgIleSerSerIl : 230 |||..!||||||:!!|||.!!|||!!!|||:!:|||::: |||:::...!:!|| LeuThrPheHisLeuCysSerGlnPheSerIleLeuSerSerArgValLysAsnIl 1344815 : TTGACTTTCCATCTTTGCAGTCAATTTTCGATcctgtcgagccgtgtaaaaAATAT : 1344871 231 : eAsnSerAspProSerGlnCysSerGlnAsnIleLysAspValValValThrHisG : 249 |:!! !!!:|||..!:!!! !! !! !.!.!!:|||! :!!|||! ! !||| eAspValGluProGlnLysTyrPheProGlnMetLysAlaLeuValGluArgHisT 1344872 : CGACGTCGAGCCGCAAAAGTATTTCCCACAAATGAAAGCACTCGTTGAACGGCACA : 1344928 250 : lnArgLeuLeuArg : 253 ..!||||||||| hrGluLeuLeuArg 1344929 : CCGAACTTCTACGG : 1344942 vulgar: gi|528747944|gb|AGS43067.1| 155 253 . KQ414782.1 1344648 1344942 + 173 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1344649 1344942 173 + . gene_id 1 ; sequence gi|528747944|gb|AGS43067.1| ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1344649 1344942 . + . KQ414782.1 exonerate:protein2genome:local exon 1344649 1344942 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1344649 1344942 173 + . alignment_id 1 ; Query gi|528747944|gb|AGS43067.1| ; Align 1344649 156 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747944|gb|AGS43067.1| odorant receptor Or3h, partial [Cephus cinctus] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 162 Query range: 323 -> 391 Target range: 1345564 -> 1345846 324 : SerThrArgValTyrGluAlaTrpTyrAspCysAsnTrpTyrAsnMetProThrGl : 342 |||:!!..!:!! ! :!!|||!! ||| ! !!|||||||||:!!:!:||| !:! SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 343 : uAsnAlaArgLeuIleIleLeuCysMetSerArgSerGlnLysProLeuCysLeuT : 361 ! !!.!!|||! !:!!|||!!!|||!!::!!|||||||||||||||! !! !|||| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 362 : hrSerGlyLysPheGlyIlePheCysLeuSerThrLeuThrAsp >>>> Targe : 376 ||:!!||||||||| !:!:|||! |||..!|||!!! ! ! hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIle++ 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCgt.......... : 1345723 377 : t Intron 1 >>>> ValLeuLysThrAlaMetAlaTyrLeuSerValLeuArg : 388 78 bp :!!:!!|||.!!:!!|||||||||||||||||||||!:! ++IleValLysAlaSerMetAlaTyrLeuSerValLeuLys 1345724 : ...............agATAGTAAAAGCGTCGATGGCCTATCTTTCCGTTCTGAAA : 1345835 389 : SerPheLeu : 391 |||.!!:!! SerIleIle 1345836 : AGCATTATC : 1345846 vulgar: gi|528747944|gb|AGS43067.1| 323 391 . KQ414782.1 1345564 1345846 + 162 M 52 156 5 0 2 I 0 74 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345846 162 + . gene_id 2 ; sequence gi|528747944|gb|AGS43067.1| ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345565 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345846 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345846 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345846 162 + . alignment_id 2 ; Query gi|528747944|gb|AGS43067.1| ; Align 1345565 324 156 ; Align 1345799 376 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747932|gb|AGS43061.1| odorant receptor Or3b, partial [Cephus cinctus] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 163 Query range: 153 -> 260 Target range: 1344660 -> 1344981 154 : GluAsnSerSerIleThrTyrIleLeuProTyrHisMetArgMetPhePheAsnIl : 172 ...|||!!!!!!:!! !!||| |||||| ! :!!!.! .!.!:!.!.:! SerAsnCysThrLeuProTyrGluLeuProMetLysValAsnHisLeuTyrGluVa 1344661 : AGTAACTGTACTCTTCCTTACGAGCTACCAATGAAAGTGAACCACCTGTACGAAGT : 1344715 173 : eThrGluSerSerLeuTyrTyrTyrValTyrAlaTyrGluGlyValLeuValProI : 191 :|||||| ! !! !||| !! !!! !!.!||| ! ! ! ! ! !: lThrGluValArgThrTyrAlaLeuPheCysValTyrPheValProThrSerMetL 1344716 : GACAGAGGTGCGGACGTACGCTTTGTTCTGCGTTTACTTCGTACCGACGAGCATGT : 1344772 192 : leIleAlaCysGlyTyrSerGlyThrAspCysLeuLeuValThrLeuThrLeuHis : 209 !!:!!.!! !||| !!!|||.!!||| !!||||||||||||||||||!!!||| euLeuThrIleGlyAlaThrGlyAlaAspSerLeuLeuValThrLeuThrPheHis 1344773 : TACTAACAATCGGTGCAACTGGCGCCGACAGTCTTCTAGTCACCTTGACTTTCCAT : 1344826 210 : LeuCysAlaGlnIleSerValLeuAlaAsnGlnValGluAsnLeuAsnGlyAspPh : 228 ||||||::!|||.!!|||:!:|||:::::::::|||:::|||:!!:!!! !!!: LeuCysSerGlnPheSerIleLeuSerSerArgValLysAsnIleAspValGluPr 1344827 : CTTTGCAGTCAATTTTCGATcctgtcgagccgtgtaaaaAATATCGACGTCGAGCC : 1344883 229 : eArgLysPheHisSerHisLeuLysGlnValValThrLysHisSerArgIleIleS : 247 !:!|||!:! ! !!!!.:!!||| !:!!||| !::!|||!!!..!:!!:!! oGlnLysTyrPheProGlnMetLysAlaLeuValGluArgHisThrGluLeuLeuA 1344884 : GCAAAAGTATTTCCCACAAATGAAAGCACTCGTTGAACGGCACACCGAACTTCTAC : 1344940 248 : erLeuSerValLysLeuArgThrAlaPheAlaTyrPheLeu : 260 !!! !..!..! !:!!|||!.!||| ! ! !|||||| rg***GluThrProIleArgAsnAlaArgIleLeuPheLeu 1344941 : GGTGAGAAACTCCAATACGAAACGCACGCATACTTTTCCTC : 1344981 vulgar: gi|528747932|gb|AGS43061.1| 153 260 . KQ414782.1 1344660 1344981 + 163 M 107 321 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1344661 1344981 163 + . gene_id 1 ; sequence gi|528747932|gb|AGS43061.1| ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1344661 1344981 . + . KQ414782.1 exonerate:protein2genome:local exon 1344661 1344981 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1344661 1344981 163 + . alignment_id 1 ; Query gi|528747932|gb|AGS43061.1| ; Align 1344661 154 321 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747920|gb|AGS43055.1| odorant receptor Or2f [Cephus cinctus] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 128 Query range: 266 -> 333 Target range: 1345564 -> 1345843 267 : SerThrAsnIleAlaPheAlaPheTyrAsnCysSerTrpTyrAsnTyrGluLysSe : 285 |||:!!.!.!!: ! |||! !||| ! !!!:!||||||:!!! ! ! !. SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 286 : rIleGlySerSerIleGlnIleAlaIleAlaArgSerGlnAsnProValAlaLeuT : 304 ! ! ! !!|||:!! !.!!..!|||||||||||||||!!.||| ! !|||| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 305 : hrAlaGlyLysPheValIleMetSerLeuGluThrPheThrSer >>>> Targe : 319 |||||||||||||| !:!:.!.||||||||||||||| !! ! hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIle++ 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCgt.......... : 1345723 320 : t Intron 1 >>>> IleLeuSerSerAlaMetSerPhePheAlaValLeuLys : 331 78 bp |||:!!!.!:!!:!!|||:!!!:!.!!:!!||||||||| ++IleValLysAlaSerMetAlaTyrLeuSerValLeuLys 1345724 : ...............agATAGTAAAAGCGTCGATGGCCTATCTTTCCGTTCTGAAA : 1345835 332 : SerIle : 333 |||||| SerIle 1345836 : AGCATT : 1345843 vulgar: gi|528747920|gb|AGS43055.1| 266 333 . KQ414782.1 1345564 1345843 + 128 M 52 156 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345843 128 + . gene_id 1 ; sequence gi|528747920|gb|AGS43055.1| ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345565 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345843 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345843 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345843 128 + . alignment_id 1 ; Query gi|528747920|gb|AGS43055.1| ; Align 1345565 267 156 ; Align 1345799 319 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747920|gb|AGS43055.1| odorant receptor Or2f [Cephus cinctus] Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 235 -> 319 Target range: 4395106 -> 4395361 236 : GlyAlaAspLeuLeuLysPheLeuGlyLeuPheMetValPheIleMetGlnMetLe : 254 |||.!!|||||||||||||||:!!..!! !!!.! !.!. :!!|||:!:|| GlyThrAspLeuLeuLysPheValSerTyrLeuThrSerMetGlyValGlnLeuLe 4395107 : GGTACCGATCTTCTCAAATTTGTGTCTTATTTAACCTCGATGGGGGTGCAACTTTT : 4395161 255 : uPheValCysTrpProAlaAspTyrLeuSerSerGluSerThrAsnIleAlaPheA : 273 |.!. !|||||||||!.!!!: !||| !..!|||||| !.!.|||!.! !! uLeuTrpCysTrpProGlyGluIleLeuValGlnGluSerLeuGluIleGlyHisV 4395162 : GCTATGGTGTTGGCCTGGTGAAATTCTCGTTCAAGAGAGTTTAGAAATAGGTCATG : 4395218 274 : laPheTyr<->AsnCysSerTrpTyrAsnTyrGluLysSerIleGlySerSerIle : 290 .! !!||| ||| !!|||||||||! ! !! ! ! !!.!..!:!! alValTyrLeuAsnIleProTrpTyrAsnLeuProProIleTyrGlnLysGlnLeu 4395219 : TAGTCTATCTAAATATACCATGGTACAATTTACCACCGATTTATCAGAAACAACTT : 4395272 291 : GlnIleAlaIleAlaArgSerGlnAsnProValAlaLeuThrAlaGlyLysPheVa : 309 :!: !||| !|||:!!|||.!. ! !::!:!!|||||| !! !||| CysLeuMetIleIleArgAlaGlnGlnTyrCysSerIleThrAlaLeuThrPheGl 4395273 : TGCCTGATGATCATTAGGGCCCAACAGTATTGCAGCATTACGGCATTAACGTTTCA : 4395329 310 : lIleMetSerLeuGluThrPheThrSerIle : 319 !! :!!|||:!!.!.|||!!.|||:!!:!! nThrLeuSerIleHisThrLeuThrAlaVal 4395330 : AACGTTGTCTATTCACACGTTAACAGCCGTA : 4395361 vulgar: gi|528747920|gb|AGS43055.1| 235 319 . KQ414784.1 4395106 4395361 + 124 M 40 120 G 0 3 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4395107 4395361 124 + . gene_id 1 ; sequence gi|528747920|gb|AGS43055.1| ; gene_orientation . KQ414784.1 exonerate:protein2genome:local cds 4395107 4395361 . + . KQ414784.1 exonerate:protein2genome:local exon 4395107 4395361 . + . insertions 3 ; deletions 0 KQ414784.1 exonerate:protein2genome:local similarity 4395107 4395361 124 + . alignment_id 1 ; Query gi|528747920|gb|AGS43055.1| ; Align 4395107 236 120 ; Align 4395230 276 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747944|gb|AGS43067.1| odorant receptor Or3h, partial [Cephus cinctus] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 320 -> 387 Target range: 34375 -> 34659 321 : ValGlnGluSerThrArgValTyrGluAlaTrpTyrAspCysAsnTrpTyrAsnMetPro : 340 :!! :!!|||! !..!:!! !.!.:!! |||!!:! ||||||||||||:!: !! IlePheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSer 34376 : ATATTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCA : 34433 341 : ThrGluAsnAlaArgLeuIleIleLeuCysMetSerArgSerGlnLysProLeuCysLeu : 360 !! !.!.|||!:!! !:!!:!!!!! !||| !|||!!! :::|||||||||||| ProProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeu 34434 : CCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTG : 34493 361 : ThrSerGlyLysPheGlyIlePheCysLeuSerThrLeuThrAsp >>>> Target I : 376 |||:!!|||||||||.!!! !|||! !:!!..!! !!!!!:! ! 83 ThrAlaGlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34494 : ACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt............. : 34543 377 : ntron 1 >>>> ValLeuLysThrAlaMetAlaTyrLeuSerValLeu : 387 bp :::|||||||||||||||!.!||||||||||||||| ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeu 34544 : ............agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTC : 34659 vulgar: gi|528747944|gb|AGS43067.1| 320 387 . KQ414804.1 34375 34659 + 143 M 55 165 5 0 2 I 0 79 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34376 34659 143 + . gene_id 1 ; sequence gi|528747944|gb|AGS43067.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34376 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34376 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34659 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34659 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34376 34659 143 + . alignment_id 1 ; Query gi|528747944|gb|AGS43067.1| ; Align 34376 321 165 ; Align 34624 376 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747944|gb|AGS43067.1| odorant receptor Or3h, partial [Cephus cinctus] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 323 -> 376 Target range: 39965 -> 40124 324 : SerThrArgValTyrGluAlaTrpTyrAspCysAsnTrpTyrAsnMetProThrGluAsn : 343 |||||| !!:!! !:!!:!! ||||||||||||||||||:!!:!:||| !!:!!:!! SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 344 : AlaArgLeuIleIleLeuCysMetSerArgSerGlnLysProLeuCysLeuThrSerGly : 363 ||| !! !:!!:!!:!! !!:!!!|||:!!||| ! !!!!! :!!|||:!!||| AlaValSerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGly 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGA : 40083 364 : LysPheGlyIlePheCysLeuSerThrLeuThrAspVal : 376 ||||||.!! !|||! !|||..! !!!!!.!! !||| LysPheSerProPheSerLeuGluLeuPheAsnAlaVal 40084 : AAATTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTGTG : 40124 vulgar: gi|528747944|gb|AGS43067.1| 323 376 . KQ414804.1 39965 40124 + 106 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40124 106 + . gene_id 2 ; sequence gi|528747944|gb|AGS43067.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39966 40124 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40124 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39966 40124 106 + . alignment_id 2 ; Query gi|528747944|gb|AGS43067.1| ; Align 39966 324 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747930|gb|AGS43060.1| odorant receptor Or3a [Cephus cinctus] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 360 -> 410 Target range: 34369 -> 34519 361 : CysLeuIleHisGluSerSerSerIleHisAsnAlaCysTyrPheSerAsnTrpTyrArg : 380 ||| !||| !:!!|||!!!..!!!: !|||:!!..!||| ||||||||||||!.! CysGlyIlePheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsn 34370 : tGTGGTATATTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAAC : 34427 381 : LeuProProAspLeuAlaArgProIleIleIleProIleMetArgSerArgLysProLeu : 400 :!! !!||| !|||!:! !:!!:!!.!! !!!: |||!!! !:::|||||| ValSerProProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeu 34428 : GTCTCACCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTT : 34487 401 : HisLeuThrAlaGlyGlnPheTyrValPhe : 410 !||||||||||||:!!||| !..!||| CysLeuThrAlaGlyLysPheSerThrPhe 34488 : TGCTTGACTGCAGGAAAATTCAGTACCTTC : 34519 vulgar: gi|528747930|gb|AGS43060.1| 360 410 . KQ414804.1 34369 34519 + 103 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34370 34519 103 + . gene_id 1 ; sequence gi|528747930|gb|AGS43060.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 34370 34519 . + . KQ414804.1 exonerate:protein2genome:local exon 34370 34519 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34370 34519 103 + . alignment_id 1 ; Query gi|528747930|gb|AGS43060.1| ; Align 34370 361 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747920|gb|AGS43055.1| odorant receptor Or2f [Cephus cinctus] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 266 -> 319 Target range: 39965 -> 40124 267 : SerThrAsnIleAlaPheAlaPheTyrAsnCysSerTrpTyrAsnTyrGluLysSerIle : 286 ||||||...|||!.! :!! |||:!!|||!:!||||||:!!! ! !!.! ! SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 287 : GlySerSerIleGlnIleAlaIleAlaArgSerGlnAsnProValAlaLeuThrAlaGly : 306 !.! !|||:!! |||!.!|||..!|||:!!||| !! !! !:!!||||||||| AlaValSerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGly 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGA : 40083 307 : LysPheValIleMetSerLeuGluThrPheThrSerIle : 319 |||||| ! !.!.||||||||| !|||!.!:!!:!: LysPheSerProPheSerLeuGluLeuPheAsnAlaVal 40084 : AAATTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTGTG : 40124 vulgar: gi|528747920|gb|AGS43055.1| 266 319 . KQ414804.1 39965 40124 + 100 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40124 100 + . gene_id 1 ; sequence gi|528747920|gb|AGS43055.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39966 40124 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40124 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39966 40124 100 + . alignment_id 1 ; Query gi|528747920|gb|AGS43055.1| ; Align 39966 267 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747936|gb|AGS43063.1| odorant receptor Or3d [Cephus cinctus] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 186 -> 249 Target range: 44886 -> 45075 187 : SerTrpTyrProPheGluMetHisSerThrProAsnTyrGluMetLeuLeuThrPheGln : 206 :!!!::!:!|||!:!!!:! !! !!:!||||||||||||.!. !:!!! ! !||| AlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThrValIleAlaGln 44887 : GCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACAGTGATTGCTCAA : 44944 207 : ValIleIleGlyCysSerIleAlaValSerSerAlaAlaValAspSerLeuLeuValThr : 226 :!!||| !!.!! !! ! !|||..!!!!! !.!!|||||||||!!!!!!:!!|||! ! IleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThrPheIleValMet 44945 : ATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACTTTCATTGTAATG : 45004 227 : AlaValPheHisValCysGlyGlnLeuGluIleLeuArgLysTyrPheGluAsnLeuHis : 246 !:!!.!.||||||||||||||||||..!! !||||||!!. ! |||! !!.|||!!. LeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArgAsnGluPheGlyLysLeuGln 45005 : TTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGAAACGAATTCGGTAAGCTTCAA : 45064 247 : SerSerGlu : 249 :!!!!!!!: AlaCysAsp 45065 : GCATGCGAT : 45075 vulgar: gi|528747936|gb|AGS43063.1| 186 249 . KQ414804.1 44886 45075 + 118 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44887 45075 118 + . gene_id 1 ; sequence gi|528747936|gb|AGS43063.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44887 45075 . + . KQ414804.1 exonerate:protein2genome:local exon 44887 45075 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44887 45075 118 + . alignment_id 1 ; Query gi|528747936|gb|AGS43063.1| ; Align 44887 187 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747936|gb|AGS43063.1| odorant receptor Or3d [Cephus cinctus] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 133 -> 245 Target range: 36617 -> 36953 134 : SerGluAsnIleMetLeuLeuHisAlaAsnIleProArgIlePhePheIleAlaTyrThr : 153 ..!...:!!! |||||| ! !|||!!.||| !|||!!:.!.! !|||!.!! !:!! AspArgHisThrMetLeuLysThrAlaLysIleSerArgMetIleSerIleValCysSer 36618 : GATCGCCACACGATGCTGAAGACCGCGAAAATTAGTCGAATGATATCCATAGTCTGTTCT : 36675 154 : AlaLeuAlaLeuValAlaTrpThrAlaThrValValAlaAlaValSerArgLysSerSer : 173 !|||.!!! !||| ! !||| !:!! ! ! !:!!!!!!!!!..! !..! IleLeuThrTyrValMetValLeuAlaPheLeuSerLeuGlnIleTrpSerSerMetGln 36676 : ATCCTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATTTGGAGCAGCATGCAA : 36735 174 : LysMetGlnIleAspAlaSerAsnAlaPheProMetProSerTrpTyrProPheGluMet : 193 !!.! ..! ! ! !...!.!.!.! !!!:|||:!! !:!|||!:!!!:! ! AsnThrSerGluPheAsnValGlyGlyLeuLeuIleProAlaThrPheProTyrAspThr 36736 : AACACCTCGGAGTTCAACGTAGGAGGACTACTTATCCCGGCCACATTTCCATACGACACG : 36795 194 : HisSerThrProAsnTyrGluMetLeuLeuThrPheGlnValIleIleGlyCysSerIle : 213 :!!!.!!:!||||||||||||!!: !! ! ! ||| !!:!: ! ! !! ! AsnLysSerProAsnTyrGluIleThrTrpLeuGlyGlnPheValGlyThrValLeuSer 36796 : AATAAAAGTCCTAATTACGAAATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGC : 36855 214 : AlaValSerSerAlaAlaValAspSerLeuLeuValThrAlaValPheHisValCysGly : 233 |||:!!!!!! !:!!..! !!|||!!!!!!:!!!.!..! !|||!!.|||:!!|||||| AlaIleCysTyrSerCysPheAspThrPheValAlaValLeuValLeuHisIleCysGly 36856 : GCGATATGTTATTCCTGCTTCGATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGC : 36915 234 : GlnLeuGluIleLeuArgLysTyrPheGluAsnLeu : 245 |||||| :!!||||||! !.!!||||||||| GlnLeuThrValLeuArgIleAlaLeuGluAsnLeu 36916 : CAATTAACTGTTCTCCGCATTGCCCTCGAGAATCTT : 36953 vulgar: gi|528747936|gb|AGS43063.1| 133 245 . KQ414804.1 36617 36953 + 112 M 112 336 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36618 36953 112 + . gene_id 2 ; sequence gi|528747936|gb|AGS43063.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36618 36953 . + . KQ414804.1 exonerate:protein2genome:local exon 36618 36953 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36618 36953 112 + . alignment_id 2 ; Query gi|528747936|gb|AGS43063.1| ; Align 36618 134 336 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747928|gb|AGS43059.1| odorant receptor Or2j [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 78 -> 119 Target range: 17812 -> 17935 79 : AlaProValValGluAsnPheHisArgAsnGluThrAspArgIleLeuProPheThrLeu : 98 ||| !:!!:!: |||... :::||||||:!!!!:|||||||||||||||!.!:!! AlaPheIleLeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMet 17813 : GCTTTCATTTTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATG : 17870 99 : TrpValAsnLeuProValThrValThrProTyrTyrGluIleThrTyrThrIleGlnSer : 118 |||||||||||||||:!!:!!:!!|||||||||||||||||||||:::::::::||| ! TrpValAsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGlnVal 17871 : TGGGTCAACTTGCCATTATCAATGACGCCATATTACgaaataactttttcattaCAGGTA : 17930 119 : Leu : 119 ||| Leu 17931 : ttg : 17935 vulgar: gi|528747928|gb|AGS43059.1| 78 119 . KQ414828.1 17812 17935 + 139 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17813 17935 139 + . gene_id 1 ; sequence gi|528747928|gb|AGS43059.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 17813 17935 . + . KQ414828.1 exonerate:protein2genome:local exon 17813 17935 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17813 17935 139 + . alignment_id 1 ; Query gi|528747928|gb|AGS43059.1| ; Align 17813 79 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747928|gb|AGS43059.1| odorant receptor Or2j [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 86 -> 117 Target range: 2891 -> 2984 87 : ArgAsnGluThrAspArgIleLeuProPheThrLeuTrpValAsnLeuProValThrValTh : 107 :::||||||:::||||||:!!||| ! !!!.!!!!|||:!!:!!||||||:!!|||:!!|| LysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuProIleThrIleTh 2892 : aaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCCGATAACCATCAC : 2952 108 : rProTyrTyrGluIleThrTyrThrIleGln : 117 |||||||||||||||| :::||||||||| rProTyrTyrGluIleLeuPheThrIleGln 2953 : ACCATactatgaaatattatttacgaTACAG : 2984 vulgar: gi|528747928|gb|AGS43059.1| 86 117 . KQ414828.1 2891 2984 + 115 M 31 93 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2892 2984 115 + . gene_id 2 ; sequence gi|528747928|gb|AGS43059.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 2892 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2892 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2892 2984 115 + . alignment_id 2 ; Query gi|528747928|gb|AGS43059.1| ; Align 2892 87 93 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747928|gb|AGS43059.1| odorant receptor Or2j [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 80 -> 119 Target range: 27339 -> 27456 81 : ValValGluAsnPheHisArgAsnGluThrAspArgIleLeuProPheThrLeuTrpVal : 100 :::::: |||.!! !:!||||||:!!|||||| !! ! !||| !:!!||| !! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPhe 27340 : attttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTC : 27397 101 : AsnLeuProValThrValThrProTyrTyrGluIleThrTyrThrIleGlnSerLeu : 119 :!!||||||:!!:!!|||||||||||||||||||||||||||! !|||||| !||| AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeu 27398 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTA : 27456 vulgar: gi|528747928|gb|AGS43059.1| 80 119 . KQ414828.1 27339 27456 + 115 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27340 27456 115 + . gene_id 3 ; sequence gi|528747928|gb|AGS43059.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27340 27456 . + . KQ414828.1 exonerate:protein2genome:local exon 27340 27456 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27340 27456 115 + . alignment_id 3 ; Query gi|528747928|gb|AGS43059.1| ; Align 27340 81 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747928|gb|AGS43059.1| odorant receptor Or2j [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 80 -> 119 Target range: 22307 -> 22424 81 : ValValGluAsnPheHisArgAsnGluThrAspArgIleLeuProPheThrLeuTrpVal : 100 :::::: |||.!! !:!||||||:!!|||||| !! ! !!:! !:!!|||:!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 22308 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 22365 101 : AsnLeuProValThrValThrProTyrTyrGluIleThrTyrThrIleGlnSerLeu : 119 :!!||||||:!!:!!|||||||||||||||||||||||||||! !|||||| !||| AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeu 22366 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTA : 22424 vulgar: gi|528747928|gb|AGS43059.1| 80 119 . KQ414828.1 22307 22424 + 114 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22308 22424 114 + . gene_id 4 ; sequence gi|528747928|gb|AGS43059.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 22308 22424 . + . KQ414828.1 exonerate:protein2genome:local exon 22308 22424 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22308 22424 114 + . alignment_id 4 ; Query gi|528747928|gb|AGS43059.1| ; Align 22308 81 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747928|gb|AGS43059.1| odorant receptor Or2j [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 80 -> 119 Target range: 32386 -> 32503 81 : ValValGluAsnPheHisArgAsnGluThrAspArgIleLeuProPheThrLeuTrpVal : 100 :::::: |||.!! !:!||||||:!!|||||| !! ! !!:! !:!!|||:!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 32387 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 32444 101 : AsnLeuProValThrValThrProTyrTyrGluIleThrTyrThrIleGlnSerLeu : 119 :!!||||||:!!:!!|||||||||||||||||||||||||||! !|||||| !||| AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeu 32445 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTA : 32503 vulgar: gi|528747928|gb|AGS43059.1| 80 119 . KQ414828.1 32386 32503 + 114 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32387 32503 114 + . gene_id 5 ; sequence gi|528747928|gb|AGS43059.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 32387 32503 . + . KQ414828.1 exonerate:protein2genome:local exon 32387 32503 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32387 32503 114 + . alignment_id 5 ; Query gi|528747928|gb|AGS43059.1| ; Align 32387 81 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747928|gb|AGS43059.1| odorant receptor Or2j [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 80 -> 119 Target range: 37450 -> 37567 81 : ValValGluAsnPheHisArgAsnGluThrAspArgIleLeuProPheThrLeuTrpVal : 100 ::: |||.!! !:!||||||:!!|||||| !! ! !!:! !:!!|||:!! IleSerAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 37451 : atttcagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 37508 101 : AsnLeuProValThrValThrProTyrTyrGluIleThrTyrThrIleGlnSerLeu : 119 :!!||||||:!!:!!:!!||||||||||||||||||||||||! !|||||| !||| AspLeuProLeuSerIleThrProTyrTyrGluIleThrTyrIleIleGlnValLeu 37509 : GATCTACCATTATCCATAACAccatattatgaaattacttACATAATACAGGTATTA : 37567 vulgar: gi|528747928|gb|AGS43059.1| 80 119 . KQ414828.1 37450 37567 + 110 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37451 37567 110 + . gene_id 6 ; sequence gi|528747928|gb|AGS43059.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37451 37567 . + . KQ414828.1 exonerate:protein2genome:local exon 37451 37567 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37451 37567 110 + . alignment_id 6 ; Query gi|528747928|gb|AGS43059.1| ; Align 37451 81 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747922|gb|AGS43056.1| odorant receptor Or2g [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 489 Query range: 130 -> 373 Target range: 17818 -> 19638 131 : IleIleGluAsnIleGlyLysAsnGluSerAspArgValLeuProValThrLeuTrpIle : 150 |||:!: |||||||||||||||||||||!!:|||:!!|||||| !!!.!:!!|||:!! IleLeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpVal 17819 : ATTTTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTC : 17876 151 : AsnIleProValThrThrThrProTyrPheGluIleCysPheValMetGlu >>>> Ta : 168 |||:!:|||:!!:!!! !|||||||||!:!|||||| ||| ::::!! AsnLeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln++ 17877 : AACTTGCCATTATCAATGACGCCATATTACgaaataactttttcattaCAGgt....... : 17932 169 : rget Intron 1 >>>> SerLeuThrIleValHisIleGlyIleCysPhePheCysP : 181 110 bp !|||:!!:!: !|||||||||:!: !!!:!||||||| ++ValLeuSerLeuTyrHisIleGlyValSerTyrPheCysP 17933 : ..................aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCTgct : 18079 182 : heAspIlePheLeuCysIleLeuAsnIleHisAlaAlaGlyGlnPheLysMetLeuGlnH : 201 ||||| ||||||||||||:!!|||:!:||||||||| !||||||::!:!:||||||: heAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuGlnT 18080 : tcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGCAAT : 18139 202 : isArgPheAlaLeuValTyrAspGlyAspAsnLysGln<-><->GluMetProIleThrA : 219 !!|||.!.||| !:!! !||| ! ! :::|||::: ||| ::: ! yrArgMetAlaAsnMetThrAspLeuLysAspLysGluArgLysGluArgAsnMetLysT 18140 : ACCGAATGGCGAATATGACCGATTTAAAGGacaaagagaggaaagagagaaatatgaAGA : 18199 220 : spLysLeuHisPheValLysAspSerGluGluIleTyrIleLysPheLysAspCysValL : 239 !..:!! !! !.! !:!! !||| !|||! ! .!!||||||! !:!!! hrSerValSerSerAlaCysPheAlaThrGluCysTyrAsnValLeuLysAspTyrIleA 18200 : CAAGTGTGAGTTCGGCGTGCTTTGCAACAGAATGTTACAACGTTCTCAAAGATTATATCA : 18259 240 : ysHisHisLysIleLeuIleAspTyrThrGluLysValGlnSerValPheThrPheIleI : 259 :!!!.|||:!!! !||||||! !||| !.!.|||:!!:!!!.!||||||!.!.!!|||: rgGlnHisGlnAsnLeuIleAlaTyrCysAsnLysLeuGluLysValPheAsnIleIleV 18260 : GACAGCATCAGAACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGTTCAATATCATTG : 18319 260 : leLeuCysGlnIleLeuIleSerSerLeuMetMetThrMetAlaGlyPheGlnAlaLeuL : 279 !!||| ! |||:!:|||!!:! !|||:!!:!!!!: !:!:! !||||||||| !|||: alLeuGlyGlnLeuLeuMetPheSerMetLeuIleCysLeuAspGlyPheGlnIleLeuM 18320 : TTCTGGGGCAATTGTTAATGTTCAGCATGTTGATCTGTCTCGATGGATTTCAGATACTTA : 18379 280 : eu >>>> Target Intron 2 >>>> ThrHisGlySerIleIleArgArgLeuIl : 289 !! 975 bp .!!:!! ! !!! !! !! !|||||||| et++ ++AlaAsnThrProThrArgThrArgLeuIl 18380 : TGgt.........................agGCAAATACACCTACCAGAACCCGACTGAT : 19384 290 : ePheIleAlaHisThrSerGlyCysPheAlaGlnLeuLeuLeuPheThrSerThrCysHi : 309 ||||||| !|||! !.!!!.!|||.!...!|||||||||:!!||||||! !!:!||| ! ePheIlePheHisIleGlyAlaCysMetCysGlnLeuLeuMetPheThrTyrSerCysAs 19385 : TTTCATCTTTCACATAGGAGCATGCATGTGTCAATTGCTGATGTTTACCTACAGCTGCGA : 19444 310 : sGluIleIleIleGluSerGlyGlyIleAlaAspAlaAlaTyrAsnAlaAspTrpAlaAs : 329 ! ||||||! !|||||| !.!!! !|||!!:|||!.!|||!:!!.! !|||.!! pCysIleIleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyProTrpThrLe 19445 : CTGCATCATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTGGACACT : 19504 330 : nThrProTyrAspAspValGlyArgSerLeuArgIleGlyLeuGlnLeuValMetIleAr : 349 ! !||| ..!! ! !|||!:!! !:!!|||! !! !|||..!||||||!!:!!:|| uLeuProMetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuValIleMetAr 19505 : TTTACCAATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTATCATGAG : 19564 350 : gAlaSerArgProCysHisLeuSerAlaGlyGlyPheCysHisValSerLeuAspThrPh : 369 |:!!||| !|||||| !|||!!!||| !!||||||! ! !|||||||||!!:|||!: gSerSerValProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGluThrTy 19565 : ATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGAAACGTA : 19624 370 : eThrAlaValIle : 373 !|||!.!|||||| rThrGlyValIle 19625 : CACAGGGGTAATC : 19638 vulgar: gi|528747922|gb|AGS43056.1| 130 373 . KQ414828.1 17818 19638 + 489 M 37 111 5 0 2 I 0 106 3 0 2 M 46 138 G 0 6 M 66 198 5 0 2 I 0 971 3 0 2 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17819 19638 489 + . gene_id 1 ; sequence gi|528747922|gb|AGS43056.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17819 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17819 17929 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18381 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19638 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19638 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17819 19638 489 + . alignment_id 1 ; Query gi|528747922|gb|AGS43056.1| ; Align 17819 131 111 ; Align 18040 168 138 ; Align 18184 214 198 ; Align 19357 280 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747922|gb|AGS43056.1| odorant receptor Or2g [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 303 Query range: 130 -> 279 Target range: 32386 -> 33137 131 : IleIleGluAsnIleGlyLysAsnGluSerAspArgValLeuProValThrLeuTrpIle : 150 |||::: |||:!!|||||||||||||||||||||! !! ! ! ! !:!!|||:!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 32387 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 32444 151 : AsnIleProValThrThrThrProTyrPheGluIleCysPheValMetGlu >>>> Ta : 168 :!!:!!|||:!!:!!..!|||||||||:::|||||| ::!:!!!!::!! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGln++ 32445 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGgt....... : 32500 169 : rget Intron 1 >>>> SerLeuThrIleValHisIleGlyIleCysPhePheCysP : 181 307 bp :!!|||:!!:!: !!!.:!!|||:!:|||!:!.!!|||| ++AlaLeuSerValTyrGlnValGlyValCysTyrLeuCysP 32501 : ..................agGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCT : 32844 182 : heAspIlePheLeuCysIleLeuAsnIleHisAlaAlaGlyGlnPheLysMetLeuGlnH : 201 ||||| ...... |||::: !:!!|||!.!||||||||||||:::!!:||||||: heAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnT 32845 : ttgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAAT : 32904 202 : isArgPheAlaLeuValTyrAspGlyAspAsnLysGlnGluMetProIleThrAspLysL : 221 !!|||.!!||| !||| ...||| !:!:!! !! !! ! !! ! !:!!! ! yrArgIleAlaAsnVal---SerGlyLeuSerGluIleValLysSerAsnAspAsnThrS 32905 : ACAGAATTGCCAATGTG---TCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACAA : 32961 222 : euHisPheValLysAspSerGluGluIleTyrIleLysPheLysAspCysValLysHisH : 241 ! !! ! ! !!||||||:!! !|||||||||||||||:!!|||:!!:!!!!.| erThrAlaGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnH 32962 : GCACGGCTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAAC : 33021 242 : isLysIleLeuIleAspTyrThrGluLysValGlnSerValPheThrPheIleIleLeuC : 261 ||:!! !||||||:::::: ||| ::!:!!..!||||||||| ! |||:!!||| isGlnAlaLeuIleGluPheCysGluIleLeuGluGluValPheThrValIleValLeuG 33022 : ATCAGGCACTaattgaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCG : 33081 262 : ysGlnIleLeuIleSerSerLeuMetMetThrMetAlaGlyPheGlnAlaLeuLeu : 279 ! |||:!!|||!!:! !|||:!!!!:!!: !.!.||||||!:!:!!!.!|||||| lyGlnValLeuMetPheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeu 33082 : GACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTG : 33137 vulgar: gi|528747922|gb|AGS43056.1| 130 279 . KQ414828.1 32386 33137 + 303 M 37 111 5 0 2 I 0 303 3 0 2 M 39 117 G 1 0 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32387 33137 303 + . gene_id 2 ; sequence gi|528747922|gb|AGS43056.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32387 32497 . + . KQ414828.1 exonerate:protein2genome:local exon 32387 32497 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 32498 32499 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 32498 32804 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32803 32804 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32805 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32805 33137 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 32387 33137 303 + . alignment_id 2 ; Query gi|528747922|gb|AGS43056.1| ; Align 32387 131 111 ; Align 32805 168 117 ; Align 32922 208 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747922|gb|AGS43056.1| odorant receptor Or2g [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 267 Query range: 130 -> 279 Target range: 22307 -> 23058 131 : IleIleGluAsnIleGlyLysAsnGluSerAspArgValLeuProValThrLeuTrpIle : 150 |||::: |||:!!|||||||||||||||||||||! !! ! ! ! !:!!|||:!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 22308 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 22365 151 : AsnIleProValThrThrThrProTyrPheGluIleCysPheValMetGluSerLeuThr : 170 :!!:!!|||:!!:!!..!|||||||||:::|||||| ::!:!!!!::!! !||| !! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 22366 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 22425 171 : IleValHis{I} >>>> Target Intron 1 >>>> {le}GlyIleCysPhePhe : 179 ||| !! {|} 307 bp {||}.!! |||!:!.!! IlePheSer{I}+- ++{le}SerAlaCysTyrLeu 22426 : ATTTTCTCA{A}gg.........................ag{TT}AGCGCGTGTTACCTT : 22759 180 : CysPheAspIlePheLeuCysIleLeuAsnIleHisAlaAlaGlyGlnPheLysMetLeu : 199 ||||||||||||...... |||||| :!!|||!.!||||||||||||:::!!:||| CysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeu 22760 : TGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTA : 22819 200 : GlnHisArgPheAlaLeuValTyrAspGlyAspAsnLysGlnGluMetProIleThrAsp : 219 |||:!!|||.!!||| !||| ...||| !:!:!! !! !! !! ! !:!! GlnTyrArgIleAlaAsnVal---SerGlyLeuSerGluIleValLysSerSerGluAsn 22820 : CAATACAGAATTGCCAATGTG---TCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAAT : 22876 220 : LysLeuHisPheValLysAspSerGluGluIleTyrIleLysPheLysAspCysValLys : 239 ! ! !! ! ! !!||||||:!! !|||||||||||||||:!!|||:!!:!! ProSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGln 22877 : CCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAA : 22936 240 : HisHisLysIleLeuIleAspTyrThrGluLysValGlnSerValPheThrPheIleIle : 259 !!.|||:!! !||||||!!:!:! !! !! !:!!:!!..!||||||||| ! |||:!! GlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleVal 22937 : CAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTA : 22996 260 : LeuCysGlnIleLeuIleSerSerLeuMetMetThrMetAlaGlyPheGlnAlaLeuLeu : 279 ||| ! |||:!!|||!!:||||||:!!:!:!!: !.!. !|||!:!|||!.!|||||| LeuGlyGlnValLeuMetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeu 22997 : CTCGGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTG : 23056 vulgar: gi|528747922|gb|AGS43056.1| 130 279 . KQ414828.1 22307 23058 + 267 M 43 129 S 0 1 5 0 2 I 0 303 3 0 2 S 1 2 M 32 96 G 1 0 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22308 23058 267 + . gene_id 3 ; sequence gi|528747922|gb|AGS43056.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22308 22437 . + . KQ414828.1 exonerate:protein2genome:local exon 22308 22437 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 22438 22439 . + . intron_id 1 ; splice_site "GG" KQ414828.1 exonerate:protein2genome:local intron 22438 22744 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22743 22744 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22745 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22745 23058 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 22308 23058 267 + . alignment_id 3 ; Query gi|528747922|gb|AGS43056.1| ; Align 22308 131 129 ; Align 22747 175 96 ; Align 22843 208 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747922|gb|AGS43056.1| odorant receptor Or2g [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 201 Query range: 283 -> 373 Target range: 4183 -> 4453 284 : IleIleArgArgLeuIlePheIleAlaHisThrSerGlyCysPheAlaGlnLeuLeuLeuPh : 304 |||!!:!:!||||||! !|||:!: !||| !!!!||||||.!...!|||||||||:!!|| IleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLeuMetPh 4184 : ATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTTGATGTT : 4244 305 : eThrSerThrCysHisGluIleIleIleGluSerGlyGlyIleAlaAspAlaAlaTyrAsnA : 325 ||||! !!:!||| !! :!:||| !|||||| !..!:!:|||:!!||| !|||:!!. eThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnAlaIleTyrAspC 4245 : CACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATGCTATATACGACT : 4307 326 : laAspTrpAlaAsnThrProTyrAspAspValGlyArgSerLeuArgIleGlyLeuGlnLeu : 345 .!...||| !:!! !||| ||| !||||||! !||||||! !! !||| !!!! ysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuArgLysAspLeuThrPhe 4308 : GCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCGAAAAGATTTGACATTC : 4367 346 : ValMetIleArgAlaSerArgProCysHisLeuSerAlaGlyGlyPheCysHisValSerLe : 366 |||!!: !|||:!!!!! !|||||| !|||!!!||| !!||||||! !! !|||||||| ValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyPhePheProValSerLe 4368 : GTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACT : 4430 367 : uAspThrPheThrAlaValIle : 373 |!!:|||!:!|||:!!|||||| uGluThrTyrThrSerValIle 4431 : GGAAACGTACACTTCGGTAATT : 4453 vulgar: gi|528747922|gb|AGS43056.1| 283 373 . KQ414828.1 4183 4453 + 201 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 4184 4453 201 + . gene_id 4 ; sequence gi|528747922|gb|AGS43056.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 4184 4453 . + . KQ414828.1 exonerate:protein2genome:local exon 4184 4453 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 4184 4453 201 + . alignment_id 4 ; Query gi|528747922|gb|AGS43056.1| ; Align 4184 284 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747922|gb|AGS43056.1| odorant receptor Or2g [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 198 Query range: 174 -> 284 Target range: 10852 -> 11179 175 : GlyIleCysPhePheCysPheAspIlePheLeuCysIleLeuAsnIleHisAlaAlaGly : 194 |||||||||!:!||||||||||||! !.!!!!!||||||:!!!:!:!:||| !::!||| GlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerValHisLeuSerGly 10853 : GGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTGCATTTGAGTGGC : 10910 195 : GlnPheLysMetLeuGlnHisArgPheAlaLeuValTyrAspGlyAspAsnLysGlnGlu : 214 ||||||:::!!:||||||:!!|||!!..!! !:!!! !|||! !.!. !!:!! !... GlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGlnTyrGlnIleSer 10911 : CAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAATATCAGATAAgc : 10970 215 : MetProIleThrAspLysLeuHisPheValLysAspSerGluGluIleTyrIleLysPhe : 234 :::...:!! !!.! ! ! !!!!.....! !||| |||||| GluLysAsnMetGluSerVal---LeuGluAspCysThrArgArgSerTyrGluLysPhe 10971 : gagaaaaatatggaatcTGTA---TTGGAAGACTGTACACGTAGATCTTACGAGAAATTT : 11027 235 : LysAspCysValLysHisHisLysIleLeuIleAspTyrThrGluLysValGlnSerVal : 254 |||..!! !|||::!!!.|||:!!! |||||||||||| !||||||:!!:!! !||| LysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLysLeuGluHisVal 11028 : AAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAGCTTGAACACGTT : 11087 255 : PheThrPheIleIleLeuCysGlnIleLeuIleSerSerLeuMetMetThrMetAlaGly : 274 !:!||| ||||||||| ! |||:!:|||:!:! !|||:!!:!:!!: !:!: !||| TyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIleCysLeuPheGly 11088 : TACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATTTGCCTCTTTGGT : 11147 275 : PheGlnAlaLeuLeuThrHisGlySerIle : 284 !:!||| !||||||..! ! !|||:!! TyrGlnIleLeuLeuValSerIleSerLeu 11148 : TATCAGATATTATTGGTTAGTATTTCACTT : 11179 vulgar: gi|528747922|gb|AGS43056.1| 174 284 . KQ414828.1 10852 11179 + 198 M 47 141 G 1 0 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10853 11179 198 + . gene_id 5 ; sequence gi|528747922|gb|AGS43056.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 10853 11179 . + . KQ414828.1 exonerate:protein2genome:local exon 10853 11179 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 10853 11179 198 + . alignment_id 5 ; Query gi|528747922|gb|AGS43056.1| ; Align 10853 175 141 ; Align 10994 223 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747922|gb|AGS43056.1| odorant receptor Or2g [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 194 Query range: 164 -> 279 Target range: 37859 -> 38201 165 : ValMetGluSerLeuThrIleValHisIleGlyIleCysPhePheCysPheAspIlePhe : 184 ::!! !:!!:!!|||:!!:!: !!!.:!!.!! |||!:!.!!||||||||||||... LeuThrGlnAlaLeuSerValTyrGlnValSerAlaCysTyrLeuCysPheAspIleIle 37860 : ctCACGCAGGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTTGCtttgatatcatt : 37917 185 : LeuCysIleLeuAsnIleHisAlaAlaGlyGlnPheLysMetLeuGlnHisArgPheAla : 204 ... |||||| :!!|||!.!||||||||||||:::!!:||||||:!!|||.!!||| PhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAla 37918 : tttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCC : 37977 205 : LeuValTyrAspGlyAspAsnLysGlnGluMetProIleThrAspLysLeuHisPheVal : 224 !||| ...||| !:!:!! !! !! !! ! !:!! ! ! !! ! AsnVal---SerGlyLeuSerGluIleValLysSerSerGluAsnProSerThrAspGlu 37978 : AATGTG---TCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAAGCACAGATGAA : 38034 225 : LysAspSerGluGluIleTyrIleLysPheLysAspCysValLysHisHisLysIleLeu : 244 ! !!||||||:!! !|||||||||||||||:!!|||:!!:!!!!.|||:!! !||| LeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeu 38035 : TTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTA : 38094 245 : IleAspTyrThrGluLysValGlnSerValPheThrPheIleIleLeuCysGlnIleLeu : 264 |||!!:!:! !! !! !:!!:!!..!||||||||| ! ||| !||| ! |||:!!||| IleGluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuGlyGlnValLeu 38095 : ATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCGGACAAGTCCTA : 38154 265 : IleSerSerLeuMetMetThrMetAlaGlyPheGlnAlaLeuLeu : 279 !!:! !|||:!!:!:!!: !.!.!.!! !!:!|||||||||||| MetPheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeu 38155 : ATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTG : 38201 vulgar: gi|528747922|gb|AGS43056.1| 164 279 . KQ414828.1 37859 38201 + 194 M 42 126 G 1 0 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37860 38201 194 + . gene_id 6 ; sequence gi|528747922|gb|AGS43056.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37860 38201 . + . KQ414828.1 exonerate:protein2genome:local exon 37860 38201 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 37860 38201 194 + . alignment_id 6 ; Query gi|528747922|gb|AGS43056.1| ; Align 37860 165 126 ; Align 37986 208 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747922|gb|AGS43056.1| odorant receptor Or2g [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 298 -> 372 Target range: 28562 -> 28784 299 : AlaGlnLeuLeuLeuPheThrSerThrCysHisGluIleIleIleGluSerGlyGlyIle : 318 ::!||||||! !:!!||||||! !!:!||| !! |||! !! !|||||| !..!||| SerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIle 28563 : AGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATC : 28620 319 : AlaAspAlaAlaTyrAsnAlaAspTrpAlaAsnThrProTyrAspAspValGlyArgSer : 338 |||!!::!!!.!||| !!.! ||| !||| !||| ||| |||::: AlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeu 28621 : GCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaactg : 28680 339 : LeuArgIleGlyLeuGlnLeuValMetIleArgAlaSerArgProCysHisLeuSerAla : 358 ||||||! !! !||||||:!!:!!!!::!:||||||!!!||||||! ! !|||!!!||| LeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThrAla 28681 : CTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCC : 28740 359 : GlyGlyPheCysHisValSerLeuAspThrPheThrAlaVal : 372 !!||||||! ! !:!!||||||!!:||||||||| !||| CysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 28741 : TGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 28784 vulgar: gi|528747922|gb|AGS43056.1| 298 372 . KQ414828.1 28562 28784 + 161 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28563 28784 161 + . gene_id 7 ; sequence gi|528747922|gb|AGS43056.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 28563 28784 . + . KQ414828.1 exonerate:protein2genome:local exon 28563 28784 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28563 28784 161 + . alignment_id 7 ; Query gi|528747922|gb|AGS43056.1| ; Align 28563 299 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747922|gb|AGS43056.1| odorant receptor Or2g [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 298 -> 372 Target range: 38538 -> 38760 299 : AlaGlnLeuLeuLeuPheThrSerThrCysHisGluIleIleIleGluSerGlyGlyIle : 318 ::!||||||! !:!!||||||! !!:!||| !! |||! !! !|||||| !..!||| SerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsnIle 38539 : AGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAACATC : 38596 319 : AlaAspAlaAlaTyrAsnAlaAspTrpAlaAsnThrProTyrAspAspValGlyArgSer : 338 |||!!::!!!.!||| !!.! ||| !||| !||| ||| |||::: AlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLysLeu 38597 : GCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaactg : 38656 339 : LeuArgIleGlyLeuGlnLeuValMetIleArgAlaSerArgProCysHisLeuSerAla : 358 ||||||! !! !||||||:!!:!!!!::!:||||||!!!||||||! ! !|||!!!||| LeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThrAla 38657 : CTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACTGCC : 38716 359 : GlyGlyPheCysHisValSerLeuAspThrPheThrAlaVal : 372 !!||||||! ! !:!!||||||!!:||||||||| !||| CysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 38717 : TGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 38760 vulgar: gi|528747922|gb|AGS43056.1| 298 372 . KQ414828.1 38538 38760 + 161 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38539 38760 161 + . gene_id 8 ; sequence gi|528747922|gb|AGS43056.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38539 38760 . + . KQ414828.1 exonerate:protein2genome:local exon 38539 38760 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38539 38760 161 + . alignment_id 8 ; Query gi|528747922|gb|AGS43056.1| ; Align 38539 299 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747922|gb|AGS43056.1| odorant receptor Or2g [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 297 -> 372 Target range: 23604 -> 23829 298 : PheAlaGlnLeuLeuLeuPheThrSerThrCysHisGluIleIleIleGluSerGlyGly : 317 .!.::!||||||! !:!!||||||! !!:!||| !! |||! !! !|||||| !..! MetSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsn 23605 : ATGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCATAACAACAGAAAGCCTGAAC : 23662 318 : IleAlaAspAlaAlaTyrAsnAlaAspTrpAlaAsnThrProTyrAspAspValGlyArg : 337 ||||||!!::!!!.!||| !!.! ||| !||| !||| ||| ! !!|||!:! IleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLys 23663 : ATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATGGACAAATTTGGAAAA : 23722 338 : SerLeuArgIleGlyLeuGlnLeuValMetIleArgAlaSerArgProCysHisLeuSer : 357 !||||||! !! !||||||:!!:!!!!::!:||||||!!!||||||! ! !|||!!! LeuLeuArgLysGluLeuGlnMetLeuIleLeuArgAlaArgArgProSerAlaLeuThr 23723 : CTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACT : 23782 358 : AlaGlyGlyPheCysHisValSerLeuAspThrPheThrAlaVal : 372 ||| !!||||||! ! !:!!||||||!!:||||||||| !||| AlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysVal 23783 : GCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTA : 23829 vulgar: gi|528747922|gb|AGS43056.1| 297 372 . KQ414828.1 23604 23829 + 160 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 23605 23829 160 + . gene_id 9 ; sequence gi|528747922|gb|AGS43056.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 23605 23829 . + . KQ414828.1 exonerate:protein2genome:local exon 23605 23829 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 23605 23829 160 + . alignment_id 9 ; Query gi|528747922|gb|AGS43056.1| ; Align 23605 298 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747922|gb|AGS43056.1| odorant receptor Or2g [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 0 -> 55 Target range: 15151 -> 15316 1 : MetLysLeuValGlyIleTrpValProLysAspAsnAsnGluGlnTrpIleMetAsnCys : 20 ||||||:!!||||||:!:|||:!! !!..!:!!..! !|||||| ! :!! ||| ! MetLysIleValGlyLeuTrpMetAlaSerAsnArgPheGluGlnArgValArgAsnIle 15152 : ATGAAGATCGTTGGACTGTGGATGGCGTCGAACCGTTTCGAGCAACGAGTACGAAATATC : 15209 21 : AlaLeuSerTyrThrIleLeuValIleLeuLeuAlaValAlaIleGluGlyPheAspIle : 40 .!!|||!!!||||||:!::!!!.!||||||!!!|||:!! !|||:!! ! |||:!: ThrLeuCysTyrThrLeuIleAlaIleLeuPheAlaLeuTrpIleGlnMetThrAspLeu 15210 : ACGCTGTGTTACACGCTGATCGCGATTCTCTTCGCCCTGTGGATACAAATGACGGATTTG : 15269 41 : TyrTyrCysTrpGlyAsnPheTyrAlaThrThrTyrThrAlaCys : 55 ||||||! ||||||:!!||| !!.!!:!.!! ! !||| TyrTyrSerTrpGlyAspPheGlyValSerAlaArgGlyIleCys 15270 : TATTACTCGTGGGGAGATTTTGGTGTAAGTGCGAGGGGAATTTGT : 15316 vulgar: gi|528747922|gb|AGS43056.1| 0 55 . KQ414828.1 15151 15316 + 124 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 15152 15316 124 + . gene_id 10 ; sequence gi|528747922|gb|AGS43056.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 15152 15316 . + . KQ414828.1 exonerate:protein2genome:local exon 15152 15316 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 15152 15316 124 + . alignment_id 10 ; Query gi|528747922|gb|AGS43056.1| ; Align 15152 1 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747922|gb|AGS43056.1| odorant receptor Or2g [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 133 -> 167 Target range: 2882 -> 2984 134 : AsnIleGlyLysAsnGluSerAspArgValLeuProValThrLeuTrpIleAsnIleProVa : 154 !::||||||||||||||||||||||||:!!||| !|||!.!!!!||||||:!!:!:|||:! SerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAspLeuProIl 2883 : AgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGACCTGCCGAT : 2943 155 : lThrThrThrProTyrPheGluIleCysPheValMetGlu : 167 !|||! !|||||||||:::|||||| |||...:!::!! eThrIleThrProTyrTyrGluIleLeuPheThrIleGln 2944 : AACCATCACACCATactatgaaatattatttacgaTACAG : 2984 vulgar: gi|528747922|gb|AGS43056.1| 133 167 . KQ414828.1 2882 2984 + 119 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2883 2984 119 + . gene_id 11 ; sequence gi|528747922|gb|AGS43056.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 2883 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2883 2984 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2883 2984 119 + . alignment_id 11 ; Query gi|528747922|gb|AGS43056.1| ; Align 2883 134 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747922|gb|AGS43056.1| odorant receptor Or2g [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 130 -> 171 Target range: 27339 -> 27462 131 : IleIleGluAsnIleGlyLysAsnGluSerAspArgValLeuProValThrLeuTrpIle : 150 |||::: |||:!!|||||||||||||||||||||! !! ! ! !! !:!!|||.!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPhe 27340 : attttagcaAATCTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTC : 27397 151 : AsnIleProValThrThrThrProTyrPheGluIleCysPheValMetGluSerLeuThr : 170 :!!:!!|||:!!:!!..!|||||||||:::|||||| ::!:!!!!::!! !||| !! AspLeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 27398 : GATCTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCA : 27457 171 : Ile : 171 ||| Ile 27458 : ATT : 27462 vulgar: gi|528747922|gb|AGS43056.1| 130 171 . KQ414828.1 27339 27462 + 109 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27340 27462 109 + . gene_id 12 ; sequence gi|528747922|gb|AGS43056.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27340 27462 . + . KQ414828.1 exonerate:protein2genome:local exon 27340 27462 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27340 27462 109 + . alignment_id 12 ; Query gi|528747922|gb|AGS43056.1| ; Align 27340 131 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747922|gb|AGS43056.1| odorant receptor Or2g [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 130 -> 171 Target range: 37450 -> 37573 131 : IleIleGluAsnIleGlyLysAsnGluSerAspArgValLeuProValThrLeuTrpIle : 150 ||| |||:!!|||||||||||||||||||||! !! ! ! ! !:!!|||:!! IleSerAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 37451 : atttcagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 37508 151 : AsnIleProValThrThrThrProTyrPheGluIleCysPheValMetGluSerLeuThr : 170 :!!:!!|||:!!:!!! !|||||||||:::|||||| ::!:!!!!::!! !||| !! AspLeuProLeuSerIleThrProTyrTyrGluIleThrTyrIleIleGlnValLeuPro 37509 : GATCTACCATTATCCATAACAccatattatgaaattacttACATAATACAGGTATTACCA : 37568 171 : Ile : 171 ||| Ile 37569 : ATT : 37573 vulgar: gi|528747922|gb|AGS43056.1| 130 171 . KQ414828.1 37450 37573 + 106 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37451 37573 106 + . gene_id 13 ; sequence gi|528747922|gb|AGS43056.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37451 37573 . + . KQ414828.1 exonerate:protein2genome:local exon 37451 37573 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37451 37573 106 + . alignment_id 13 ; Query gi|528747922|gb|AGS43056.1| ; Align 37451 131 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747924|gb|AGS43057.1| odorant receptor Or2h [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 231 Query range: 126 -> 239 Target range: 3375 -> 3705 127 : LeuPheIlePheGluGlyIleIleLeuCysTyrLeuGlyValGlyPhePheCysIleAspAs : 147 |||||| .!.:!! !.!!|||:!! |||:!! !!:!!.!!!:!.!!||||||||||| LeuPheSerLeuGlnIlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAs 3376 : CTTTTTTCGCTACAGATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAA : 3436 148 : nPhePheCysIleIleAsnIleHisValAlaGlyGlnPheLysIleLeuGlnGlyLysLeuG : 168 ||||.!.|||!!:||||||:!!|||..!||| !||||||::!||||||||| !!:!|||. nPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 3437 : TTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGT : 3499 169 : luArgLeuCysGlyProAsnAspArgGluAspGluLysLysAspArgGlyIleTrpIleArg : 188 .!!.!:!!|||||| !!|||!!:|||...|||::: ... ::: ! ! erAsnValCysGlyAlaAsnGluArgSerAspLysIleSerLysLys---------ThrPro 3500 : CGAATGTGTGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaa---------acaCCG : 3550 189 : LysAsnProAlaAlaValPheGlnGluPheArgSerCysValGlnLeuHisLysMetLeuIl : 209 ...||| !!! !! ! !!:! :!!|||!:!!:!|||:!!|||! !|||:!! ||||| SerAsnSerAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIl 3551 : TCCAATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCAT : 3613 210 : eTyrTyrValGluLysValGluAlaIlePheSerLeuIleIleLeuCysGlnValIleLeuS : 230 | ! ||| !.!.|||:!!:!!! !:!:|||.!!:!!.!!:!:|||...||||||:!:|||! eGluTyrCysAsnLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuP 3614 : AGAATACTGTAACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCT : 3676 231 : erSerIleLeuMetCysLeuAlaGlyPhe : 239 !|||:!:||||||||||||! !|||!:! heSerLeuLeuMetCysLeuAspGlyTyr 3677 : TCAGTTTGTTAATGTGCCTCGATGGATAT : 3705 vulgar: gi|528747924|gb|AGS43057.1| 126 239 . KQ414828.1 3375 3705 + 231 M 57 171 G 3 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 3376 3705 231 + . gene_id 1 ; sequence gi|528747924|gb|AGS43057.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 3376 3705 . + . KQ414828.1 exonerate:protein2genome:local exon 3376 3705 . + . insertions 0 ; deletions 3 KQ414828.1 exonerate:protein2genome:local similarity 3376 3705 231 + . alignment_id 1 ; Query gi|528747924|gb|AGS43057.1| ; Align 3376 127 171 ; Align 3547 187 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747924|gb|AGS43057.1| odorant receptor Or2h [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 206 Query range: 134 -> 240 Target range: 10840 -> 11155 135 : LeuCysTyrLeuGlyValGlyPhePheCysIleAspAsnPhePheCysIleIleAsnIle : 154 |||! !!:! !|||:!! !!!:!||||||.!!||||||.!!|||||||||!!:!:!:!: LeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerVal 10841 : CTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTG : 10898 155 : HisValAlaGlyGlnPheLysIleLeuGlnGlyLysLeuGluArgLeuCysGlyProAsn : 174 |||:!!::!|||||||||:::||||||||| !!:!||| !!:!|||! !! ! !.!. HisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGln 10899 : CATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAA : 10958 175 : AspArgGluAspGluLysLysAspArgGlyIleTrpIleArgLysAsnProAlaAlaVal : 194 !!!:! !...||||||... .....!:!! :!:..! ! ! !! ! ! ! TyrGlnIleSerGluLysAsnMetGluSerVal---LeuGluAspCysThrArgArgSer 10959 : TATCAGATAAgcgagaaaaatatggaatcTGTA---TTGGAAGACTGTACACGTAGATCT : 11015 195 : PheGlnGluPheArgSerCysValGlnLeuHisLysMetLeuIleTyrTyrValGluLys : 214 !:!:!!:!!|||!:!|||! !|||!:!! !|||:!!! !|||||| !!||| !|||||| TyrGluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLys 11016 : TACGAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAG : 11075 215 : ValGluAlaIlePheSerLeuIleIleLeuCysGlnValIleLeuSerSerIleLeuMet : 234 :!!||| !:!!!:!!!! !||||||||| ! ||||||:!!|||! !|||:!:|||!!: LeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIle 11076 : CTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATT : 11135 235 : CysLeuAlaGlyPheGln : 240 |||||| !|||!:!||| CysLeuPheGlyTyrGln 11136 : TGCCTCTTTGGTTATCAG : 11155 vulgar: gi|528747924|gb|AGS43057.1| 134 240 . KQ414828.1 10840 11155 + 206 M 51 153 G 1 0 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10841 11155 206 + . gene_id 2 ; sequence gi|528747924|gb|AGS43057.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 10841 11155 . + . KQ414828.1 exonerate:protein2genome:local exon 10841 11155 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 10841 11155 206 + . alignment_id 2 ; Query gi|528747924|gb|AGS43057.1| ; Align 10841 135 153 ; Align 10994 187 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747924|gb|AGS43057.1| odorant receptor Or2h [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 193 Query range: 123 -> 240 Target range: 18015 -> 18372 124 : PheGlnLeuLeuPheIlePheGluGlyIleIleLeuCysTyrLeuGlyValGlyPhePhe : 143 ...::::::||| |||||| !:!: !|||! !:!!:!!||||||.!!!:!||| IleArgIleLeuLysIlePhe***ValLeuSerLeuTyrHisIleGlyValSerTyrPhe 18016 : attcgaattttgaaaattttttaggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTC : 18073 144 : CysIleAspAsnPhePheCysIleIleAsnIleHisValAlaGlyGlnPheLysIleLeu : 163 |||...|||||||||...||||||!!:|||:!:|||!.!||| !||||||::!:!!||| CysPheAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeu 18074 : TgcttcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTG : 18133 164 : GlnGlyLysLeuGluArgLeuCysGlyProAsnAspArgGluAspGluLysLysAspArg : 183 ||| !::!:!!! !!.!:!! !! ! !!!.|||:::||| :::::::::::: GlnTyrArgMetAlaAsnMetThrAspLeuLysAspLysGluArgLysGluArgAsnMet 18134 : CAATACCGAATGGCGAATATGACCGATTTAAAGGacaaagagaggaaagagagaaatatg : 18193 184 : GlyIleTrpIleArgLysAsnProAlaAlaVal<-><->PheGlnGluPheArgSerCys : 201 !! ! ! :!:!!!..! ! !|||..! !:!.!.! .!!!:!..!! ! LysThrSerValSerSerAlaCysPheAlaThrGluCysTyrAsnValLeuLysAspTyr 18194 : aAGACAAGTGTGAGTTCGGCGTGCTTTGCAACAGAATGTTACAACGTTCTCAAAGATTAT : 18253 202 : ValGlnLeuHisLysMetLeuIleTyrTyrValGluLysValGluAlaIlePheSerLeu : 221 :!!::!! !|||:!!! |||||| !||| !.!.|||:!!||| !:!:|||!:!:!! IleArgGlnHisGlnAsnLeuIleAlaTyrCysAsnLysLeuGluLysValPheAsnIle 18254 : ATCAGACAGCATCAGAACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGTTCAATATC : 18313 222 : IleIleLeuCysGlnValIleLeuSerSerIleLeuMetCysLeuAlaGlyPheGln : 240 |||:!!||| ! |||:!!:!!:!!! !|||!!:|||!!:||||||! !||||||||| IleValLeuGlyGlnLeuLeuMetPheSerMetLeuIleCysLeuAspGlyPheGln 18314 : ATTGTTCTGGGGCAATTGTTAATGTTCAGCATGTTGATCTGTCTCGATGGATTTCAG : 18372 vulgar: gi|528747924|gb|AGS43057.1| 123 240 . KQ414828.1 18015 18372 + 193 M 71 213 G 0 6 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 18016 18372 193 + . gene_id 3 ; sequence gi|528747924|gb|AGS43057.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 18016 18372 . + . KQ414828.1 exonerate:protein2genome:local exon 18016 18372 . + . insertions 6 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 18016 18372 193 + . alignment_id 3 ; Query gi|528747924|gb|AGS43057.1| ; Align 18016 124 213 ; Align 18235 195 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747924|gb|AGS43057.1| odorant receptor Or2h [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 126 -> 242 Target range: 32789 -> 33134 127 : LeuPheIlePheGluGlyIleIleLeuCysTyrLeuGlyValGlyPhePheCysIleAsp : 146 ::: ::! :!!!.!:!! !:!!! ! ! :!!|||||| !!!:!.!!|||...||| IleSerLeuThrGlnAlaLeuSerValTyrGlnValGlyValCysTyrLeuCysPheAsp 32790 : atttctctCACGCAGGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCTttgat : 32847 147 : AsnPhePheCysIleIleAsnIleHisValAlaGlyGlnPheLysIleLeuGlnGlyLys : 166 |||...||| |||::: !:!!||||||||||||||||||:::||||||||| !!:! AsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArg 32848 : aacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGA : 32907 167 : LeuGluArgLeuCysGlyProAsnAspArgGluAspGluLysLysAspArgGlyIleTrp : 186 :!!! !.!:!!! |||! !!:!!!:! !! ! :!!!..!!.|||!.! !! ! ! IleAlaAsnValSerGlyLeuSerGluIleVal---LysSerAsnAspAsnThrSerThr 32908 : ATTGCCAATGTGTCAGGTCTAAGCGAGATAGTG---AAGAGCAATGATAATACAAGCACG : 32964 187 : IleArgLysAsnProAlaAlaValPheGlnGluPheArgSerCysValGlnLeuHisLys : 206 !..! ! !! !!! ! ! !!:! :!!|||!:!!:!|||:!!|||! !|||:!! AlaGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGln 32965 : GCTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAG : 33024 207 : MetLeuIleTyrTyrValGluLysValGluAlaIlePheSerLeuIleIleLeuCysGln : 226 |||||| ::: ||| ::!|||! !:!!|||!!!:!!|||:!!||| ! ||| AlaLeuIleGluPheCysGluIleLeuGluGluValPheThrValIleValLeuGlyGln 33025 : GCACTaattgaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAA : 33084 227 : ValIleLeuSerSerIleLeuMetCysLeuAlaGlyPheGlnAlaVal : 242 |||:!!:!!! !||||||:!!!!:|||!!!||||||!:!:!!!.!:!! ValLeuMetPheSerIleIleIleCysPheAlaGlyTyrGluValLeu 33085 : GTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTC : 33134 vulgar: gi|528747924|gb|AGS43057.1| 126 242 . KQ414828.1 32789 33134 + 177 M 51 153 G 1 0 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32790 33134 177 + . gene_id 4 ; sequence gi|528747924|gb|AGS43057.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 32790 33134 . + . KQ414828.1 exonerate:protein2genome:local exon 32790 33134 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 32790 33134 177 + . alignment_id 4 ; Query gi|528747924|gb|AGS43057.1| ; Align 32790 127 153 ; Align 32943 179 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747924|gb|AGS43057.1| odorant receptor Or2h [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 176 Query range: 13 -> 96 Target range: 2312 -> 2561 14 : AlaValTyrIleIleCysAsnIleLeuThrProGlyIleValLeuPheLysLeuSerMetIl : 34 !.!|||||||||!!:|||||||||||||||! !|||||| !|||||||||:!!! !:!: ValValTyrIleMetCysAsnIleLeuThrLeuGlyIleSerLeuPheLysIlePheLeuSe 2313 : GTTGTATACATAATGTGCAACATTCTAACACTGGGCATAAGTTTGTTCAAGATCTTTCTCTC : 2373 35 : eArgLeuAsnArgLysSerLeuTyrGluLeuIleAspIleCysGlnThrLysPheTrpHisA : 55 ! !! !!:!!:!|||!.!||| ||||||||| ......::!|||!!.|||||||||. rMetTrpSerLysLysLysLeuLeuGluLeuIleLysPheAlaArgThrAsnPheTrpHisS 2374 : GATGTGGAGTAAGAAAAAACttttggaattaattaaattcgccAGAACGAATTTCTGGCATT : 2436 56 : spAspTyrAspGluPheGlyIleAlaIleLeuGlnAsnCysGluThrLysCysValLeuLeu : 75 ..|||||||||..! ! ! ! !|||:!!.!..!.|||:!! !! |||..!!!!||| erAspTyrAspSerGlnGluGlnIleIleValAsnGluCysLysArgThrCysThrPheLeu 2437 : CGGATTATGACTCGCAGGAGCAAATTATTGTGAACGAGTGTAAACGCACTTGTACATTCCTT : 2496 76 : IleThrSerTyrMetSerPheAlaLeuPheThrAlaIleThrTyrThrValArgSerIleIl : 96 ||| ! !!:!! ! !|||||| ! |||!.! ! !|||! !:!!||| !!|||:! IleCysValPheAsnPhePheAlaAsnGlyThrValSerGlyTyrIleIleArgProIleVa 2497 : ATATGCGTGTTTAATTTCTTCGCTAATGGGACAGTGTCTGGATACATAATCAGGCCAATTGT : 2559 97 : e : 96 ! l 2560 : A : 2561 vulgar: gi|528747924|gb|AGS43057.1| 13 96 . KQ414828.1 2312 2561 + 176 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2313 2561 176 + . gene_id 5 ; sequence gi|528747924|gb|AGS43057.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 2313 2561 . + . KQ414828.1 exonerate:protein2genome:local exon 2313 2561 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2313 2561 176 + . alignment_id 5 ; Query gi|528747924|gb|AGS43057.1| ; Align 2313 14 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747924|gb|AGS43057.1| odorant receptor Or2h [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 141 -> 242 Target range: 22755 -> 23055 142 : PhePheCysIleAspAsnPhePheCysIleIleAsnIleHisValAlaGlyGlnPheLys : 161 !:!.!!|||...||| ...||| |||::: :!!||||||||||||||||||::: TyrLeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArg 22756 : TACCTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGT : 22813 162 : IleLeuGlnGlyLysLeuGluArgLeuCysGlyProAsnAspArgGluAspGluLysLys : 181 ||||||||| !!:!:!!! !.!:!!! |||! !!:!!!:! !! ! ! ...!..:!! IleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSerGlu 22814 : ATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAA : 22873 182 : AspArgGlyIleTrpIleArgLysAsnProAlaAlaValPheGlnGluPheArgSerCys : 201 :!!! !.!!! ! !..! ! !! !!! ! ! !!:! :!!|||!:!!:!||| AsnProSerThr---AspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCys 22874 : AATCCAAGCACA---GATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGC : 22930 202 : ValGlnLeuHisLysMetLeuIleTyrTyrValGluLysValGluAlaIlePheSerLeu : 221 :!!|||! !|||:!! |||||| ! !:! !! !! !:!!|||! !:!!|||!!!:!! IleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrVal 22931 : ATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTA : 22990 222 : IleIleLeuCysGlnValIleLeuSerSerIleLeuMetCysLeuAlaGlyPheGlnAla : 241 |||:!!||| ! ||||||:!!:!!||||||||||||!!:|||!!! !|||!:!|||!.! IleValLeuGlyGlnValLeuMetSerSerIleLeuIleCysPheIleGlyTyrGlnVal 22991 : ATCGTACTCGGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTA : 23050 242 : Val : 242 :!! Leu 23051 : CTC : 23055 vulgar: gi|528747924|gb|AGS43057.1| 141 242 . KQ414828.1 22755 23055 + 158 M 44 132 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22756 23055 158 + . gene_id 6 ; sequence gi|528747924|gb|AGS43057.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 22756 23055 . + . KQ414828.1 exonerate:protein2genome:local exon 22756 23055 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 22756 23055 158 + . alignment_id 6 ; Query gi|528747924|gb|AGS43057.1| ; Align 22756 142 132 ; Align 22888 187 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747924|gb|AGS43057.1| odorant receptor Or2h [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 141 -> 242 Target range: 37898 -> 38198 142 : PhePheCysIleAspAsnPhePheCysIleIleAsnIleHisValAlaGlyGlnPheLys : 161 !:!.!!|||...||| ...||| |||::: :!!||||||||||||||||||::: TyrLeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArg 37899 : TACCTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGT : 37956 162 : IleLeuGlnGlyLysLeuGluArgLeuCysGlyProAsnAspArgGluAspGluLysLys : 181 ||||||||| !!:!:!!! !.!:!!! |||! !!:!!!:! !! ! ! ...!..:!! IleLeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSerGlu 37957 : ATACTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAA : 38016 182 : AspArgGlyIleTrpIleArgLysAsnProAlaAlaValPheGlnGluPheArgSerCys : 201 :!!! !.!!! ! !..! ! !! !!! ! ! !!:! :!!|||!:!!:!||| AsnProSerThr---AspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCys 38017 : AATCCAAGCACA---GATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGC : 38073 202 : ValGlnLeuHisLysMetLeuIleTyrTyrValGluLysValGluAlaIlePheSerLeu : 221 :!!|||! !|||:!! |||||| ! !:! !! !! !:!!|||! !:!!|||!!!:!! IleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrVal 38074 : ATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTA : 38133 222 : IleIleLeuCysGlnValIleLeuSerSerIleLeuMetCysLeuAlaGlyPheGlnAla : 241 ||| !||| ! ||||||:!!:!!! !|||||||||!!:|||!!!!.!! !!:!|||||| IleAlaLeuGlyGlnValLeuMetPheSerIleLeuIleCysPheValValTyrGlnAla 38134 : ATTGCACTCGGACAAGTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCA : 38193 242 : Val : 242 :!! Leu 38194 : CTC : 38198 vulgar: gi|528747924|gb|AGS43057.1| 141 242 . KQ414828.1 37898 38198 + 144 M 44 132 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37899 38198 144 + . gene_id 7 ; sequence gi|528747924|gb|AGS43057.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37899 38198 . + . KQ414828.1 exonerate:protein2genome:local exon 37899 38198 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local similarity 37899 38198 144 + . alignment_id 7 ; Query gi|528747924|gb|AGS43057.1| ; Align 37899 142 132 ; Align 38031 187 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747912|gb|AGS43051.1| odorant receptor Or2b [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 240 -> 282 Target range: 33005 -> 33131 241 : LysCysIleLysLeuHisGlnAspAlaIleLysPheAlaAspAlaLeuGluAspIleIle : 260 !!.||||||:!!! !||||||! |||:::|||...::: ||||||!!::!!.!! AsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysGluIleLeuGluGluValPhe 33006 : AATTGCATTCAACAACATCAGGCACTaattgaattttgtgaaatactCGAAGAGGTATTC : 33063 261 : AsnValValAlaLeuGlyGlnPheValThrSerThrGlyLeuValCysPheAlaGlyPhe : 280 !..|||:!!!.!||||||||| ! :!!! !! !!:! !:!!:!!||||||||||||!:! ThrValIleValLeuGlyGlnValLeuMetPheSerIleIleIleCysPheAlaGlyTyr 33064 : ACGGTAATCGTACTCGGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTAT : 33123 281 : GlnLeu : 282 :!!:!! GluVal 33124 : GAAGTA : 33131 vulgar: gi|528747912|gb|AGS43051.1| 240 282 . KQ414828.1 33005 33131 + 100 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 33006 33131 100 + . gene_id 1 ; sequence gi|528747912|gb|AGS43051.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 33006 33131 . + . KQ414828.1 exonerate:protein2genome:local exon 33006 33131 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 33006 33131 100 + . alignment_id 1 ; Query gi|528747912|gb|AGS43051.1| ; Align 33006 241 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747926|gb|AGS43058.1| odorant receptor Or2i [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 184 -> 294 Target range: 10831 -> 11164 185 : ValIleGlyAlaPheSerValGlyLeuCysSerValAlaPheAlaSerTyrLeuPheTyr : 204 :!! !||| !!:!! !..!|||:!!|||! ! !!..!|||! !!:! !!!!! ! ! IleSerGlyLeuTyrPheThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIle 10832 : ATTTCAGGACTGTATTTCACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATC : 10889 205 : ThrCysThrPheValSerGlyHisPheLysIleLeuGlnArgGluLeuGluAsnValCys : 224 ! ! !!..! !:!!||||||!!.|||:::||||||||| !..!||| !!!.:!!! ! MetSerValHisLeuSerGlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSer 10890 : ATGAGCGTGCATTTGAGTGGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCC : 10949 225 : GluValGluLeuLysIleLeu<->IleThrLysSerSerTyrSerAspAsnAspAlaLys : 243 !!:|||:!!! !:!!||| ... ...||| ! !!!::!! !.!!::: AspValGlnTyrGlnIleSerGluLysAsnMetGluSerValLeuGluAspCysThrArg 10950 : GACGTACAATATCAGATAAgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGT : 11009 244 : LeuAlaTyrGluLysPheLysLysCysIleValGlnHisGluLeuLeuIleGlyTyrLeu : 263 !:!!|||||||||||||||!..! !:!! !||||||:!! !||||||! !|||! ! ArgSerTyrGluLysPheLysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyr 11010 : AGATCTTACGAGAAATTTAAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTAC : 11069 264 : GlyLysLeuGluSerLeuPheSerTyrIlePheLeuMetLeuValLeuCysIleValIle : 283 ! !||||||||| !:!!!:!!!! ! |||.!.||| !! !|||||| .!! !:!: GluLysLeuGluHisValTyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerVal 11070 : GAGAAGCTTGAACACGTTTACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTG : 11129 284 : IleLeuCysPheSerGlyPheGlnPheIleLeu : 294 :!!:!!|||.!!! !|||!:!|||.!.:!!||| LeuIleCysLeuPheGlyTyrGlnIleLeuLeu 11130 : TTAATTTGCCTCTTTGGTTATCAGATATTATTG : 11164 vulgar: gi|528747926|gb|AGS43058.1| 184 294 . KQ414828.1 10831 11164 + 151 M 47 141 G 0 3 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10832 11164 151 + . gene_id 1 ; sequence gi|528747926|gb|AGS43058.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 10832 11164 . + . KQ414828.1 exonerate:protein2genome:local exon 10832 11164 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10832 11164 151 + . alignment_id 1 ; Query gi|528747926|gb|AGS43058.1| ; Align 10832 185 141 ; Align 10976 232 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747926|gb|AGS43058.1| odorant receptor Or2i [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 151 -> 190 Target range: 27351 -> 27468 152 : ValGlyThrAsnThrThrGluArgThrLeuProPheArgValValPheAspLeuProLeu : 171 :!!|||! !||| !:!!!!:||| !! ! !||| !:!! !||||||||||||||| LeuGlyLysAsnGluSerAspArgGluHisIlePheAspMetTrpPheAspLeuProLeu 27352 : CTTGGAAAGAATGAATCGGATAGAGAACATATATTCGATATGTGGTTCGATCTACCATTA : 27409 172 : ThrValThrProTyrTyrGluIleSerTyrValIleGluValIleGlyAlaPheSer : 190 :!!|||||||||||||||||||||:::|||:!!|||:!!|||:!! ! !|||||| SerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuProIlePheSer 27410 : TCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCAATTTTCTCA : 27468 vulgar: gi|528747926|gb|AGS43058.1| 151 190 . KQ414828.1 27351 27468 + 111 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 27352 27468 111 + . gene_id 2 ; sequence gi|528747926|gb|AGS43058.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 27352 27468 . + . KQ414828.1 exonerate:protein2genome:local exon 27352 27468 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 27352 27468 111 + . alignment_id 2 ; Query gi|528747926|gb|AGS43058.1| ; Align 27352 152 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747926|gb|AGS43058.1| odorant receptor Or2i [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 151 -> 186 Target range: 17830 -> 17935 152 : ValGlyThrAsnThrThrGluArgThrLeuProPheArgValValPheAspLeuProLeu : 171 :::||| ||| :!!||||||! !|||||||||!.!:!! ! !!:!!||||||||| IleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpValAsnLeuProLeu 17831 : attggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTCAACTTGCCATTA : 17888 172 : ThrValThrProTyrTyrGluIleSerTyrValIleGluValIle : 186 :!!:!!||||||||||||||||||:::::: ::::!!|||::: SerMetThrProTyrTyrGluIleThrPheSerLeuGlnValLeu 17889 : TCAATGACGCCATATTACgaaataactttttcattaCAGGTAttg : 17935 vulgar: gi|528747926|gb|AGS43058.1| 151 186 . KQ414828.1 17830 17935 + 102 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17831 17935 102 + . gene_id 3 ; sequence gi|528747926|gb|AGS43058.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 17831 17935 . + . KQ414828.1 exonerate:protein2genome:local exon 17831 17935 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17831 17935 102 + . alignment_id 3 ; Query gi|528747926|gb|AGS43058.1| ; Align 17831 152 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747926|gb|AGS43058.1| odorant receptor Or2i [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 151 -> 190 Target range: 22319 -> 22436 152 : ValGlyThrAsnThrThrGluArgThrLeuProPheArgValValPheAspLeuProLeu : 171 :!!|||! !||| !:!!!!:||| !! ! !!:! !:!! !.!!|||||||||||| LeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuProLeu 22320 : CTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCATTA : 22377 172 : ThrValThrProTyrTyrGluIleSerTyrValIleGluValIleGlyAlaPheSer : 190 :!!|||||||||||||||||||||:::|||:!!|||:!!|||:!! ! !|||||| SerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuProIlePheSer 22378 : TCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCAATTTTCTCA : 22436 vulgar: gi|528747926|gb|AGS43058.1| 151 190 . KQ414828.1 22319 22436 + 102 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22320 22436 102 + . gene_id 4 ; sequence gi|528747926|gb|AGS43058.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 22320 22436 . + . KQ414828.1 exonerate:protein2genome:local exon 22320 22436 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22320 22436 102 + . alignment_id 4 ; Query gi|528747926|gb|AGS43058.1| ; Align 22320 152 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747926|gb|AGS43058.1| odorant receptor Or2i [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 151 -> 190 Target range: 32398 -> 32515 152 : ValGlyThrAsnThrThrGluArgThrLeuProPheArgValValPheAspLeuProLeu : 171 :!!|||! !||| !:!!!!:||| !! ! !!:! !:!! !.!!|||||||||||| LeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuProLeu 32399 : CTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCATTA : 32456 172 : ThrValThrProTyrTyrGluIleSerTyrValIleGluValIleGlyAlaPheSer : 190 :!!|||||||||||||||||||||:::|||:!!|||:!!|||:!! ! !|||||| SerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeuProIlePheSer 32457 : TCCGTAACAccatattatgaaattacttACATAATACAGGTATTACCAATTTTCTCA : 32515 vulgar: gi|528747926|gb|AGS43058.1| 151 190 . KQ414828.1 32398 32515 + 102 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32399 32515 102 + . gene_id 5 ; sequence gi|528747926|gb|AGS43058.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 32399 32515 . + . KQ414828.1 exonerate:protein2genome:local exon 32399 32515 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32399 32515 102 + . alignment_id 5 ; Query gi|528747926|gb|AGS43058.1| ; Align 32399 152 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747926|gb|AGS43058.1| odorant receptor Or2i [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 151 -> 190 Target range: 37462 -> 37579 152 : ValGlyThrAsnThrThrGluArgThrLeuProPheArgValValPheAspLeuProLeu : 171 :!!|||! !||| !:!!!!:||| !! ! !!:! !:!! !.!!|||||||||||| LeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeuAspLeuProLeu 37463 : CTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTCGATCTACCATTA : 37520 172 : ThrValThrProTyrTyrGluIleSerTyrValIleGluValIleGlyAlaPheSer : 190 :!!:!!||||||||||||||||||:::|||:!!|||:!!|||:!! ! !|||||| SerIleThrProTyrTyrGluIleThrTyrIleIleGlnValLeuProIlePheSer 37521 : TCCATAACAccatattatgaaattacttACATAATACAGGTATTACCAATTTTCTCA : 37579 vulgar: gi|528747926|gb|AGS43058.1| 151 190 . KQ414828.1 37462 37579 + 101 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37463 37579 101 + . gene_id 6 ; sequence gi|528747926|gb|AGS43058.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 37463 37579 . + . KQ414828.1 exonerate:protein2genome:local exon 37463 37579 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37463 37579 101 + . alignment_id 6 ; Query gi|528747926|gb|AGS43058.1| ; Align 37463 152 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747912|gb|AGS43051.1| odorant receptor Or2b [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 17 -> 288 Target range: 204251 -> 205996 18 : ValMetAsnThrMetGlnIleIleSerIleTrpProLeuAlaAlaAspCysGlySerT : 37 |||! ! ! !:!: !|||:!!.!! ||||||:!! !!!.!:!!! !..! !!! ValLysProIleLeuGlyIleValGlyAlaTrpProIleProValAsnSerSerProP 204252 : GTGAAGCCGATTTTAGGGATAGTCGGTGCGTGGCCGATTCCAGTGAACTCCTCTCCGT : 204309 38 : yrGluTyrLeuLeuArgIleCysHisGlnIleLeuMetPhePheValThrGlyThrMe : 56 :! ! |||:!!||| ! .!.!!.:!!:!!! :::|||::: || heThrArgLeuValArgArgIleGluHisValValThrTyrPheLeuPhePheLeuMe 204310 : TCACGAGGCTAGTACGGCGAATAGAACACGTAGTCACCtatttcctcttctttctgaT : 204366 57 : tSerIleValValThrAlaAspValIleHisAsnTrpGlyAsnMetAspThrAlaThr : 75 |! !:!! !! ! ! ! !!|||.!!! !!. ! !||| ! ! ! ! ! tIleValProGlyLeuLeuTyrValPheLeuLysGluLysAsnGlyLysIleArgLeu 204367 : GATCGTACCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAGAACGGCAAAATTCGCCTG : 204423 76 : GluCysSerLeuIleAlaSerAlaPheValLeuCysPheLeuArgLeuMetValTyrT : 95 :!! ! ! ! ! ! !! ! !:!! |||!!!!:!! ! ||| ! LysIleLeuGlyProIleValAsnCysSerIleGlnPhePheLysTyrSerValIleL 204424 : AAGATTCTCGGGCCGATCGTGAACTGCAGCATACAGTTCTTCAAGTACTCCGTCATTC : 204483 96 : hrTyrHisGlnLysAspMetArgTyrValValGluThrMetArgSerAspTrpAlaAs : 114 !|||!.. ! ! !!:!:! ! !:!!.!.|||!!:||| !!|||||| !!! euTyrArgIleAspLysIleGlnLysSerLeuAsnThrIleArgArgAspTrpIleGl 204484 : TCTACCGGATCGACAAAATTCAGAAGAGTTTGAACACCATCAGACGCGACTGGATAGA : 204540 115 : pAlaSerTyrGluGluLysGlnValLeuLysGluLysCysAspPheAlaPheArgLeu : 133 :|||!!! !!|||.!.::! !:!!!!!:::..!|||... ! .!!!.! |||:!! uAlaThrAspGluAsnArgLeuIlePheArgSerLysAlaLysIleGlyArgArgVal 204541 : GGCTACGGATGAAAATCGGTTGATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTG : 204597 134 : AlaLysTyrPheIleAlaThrVal<->AlaIleThrIleAlaPhePheMetThrValP : 152 ! ! ! !||||||:!! !.! ! !:!:..!!:! ! !! !:!!| LeuLeuIleAlaAlaAlaThrMetTyrGlyGlyGlyLeuCysTyrArgThrIleLeuP 204598 : TTGCTGATTGCAGCCGCCACTATGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTC : 204657 153 : roMetLeuGluThrTyrIleLeuHisSerGluGlu<-><-><->LysIleLeuProPh : 168 ||:!!|||..! ! |||:!! !!!!:.!. !:! ||||||! roLeuLeuArgGlyThrIleValThrProAspAsnValThrIleArgProLeuProCy 204658 : CTTTGTTGAGAGGAACGATCGTAACACCTGATAACGTTACCATAAGGCCGTTGCCGTG : 204714 169 : eArgGlyTyrPhe<->PheLeuAsnHisThrLeuSerProAsnTyrGluMetIleTyr : 186 !! !! !|||||| |||...|||.!. !! !|||||||||||||||!!::!!!:! sProValTyrPheValPhePheAsnGluGlnArgSerProAsnTyrGluIleValPhe 204715 : TCCGGTTtactttgttttctttaacGAGCAACGTTCGCCGAATTACGAGATTGTTTTT : 204771 187 : IlePheGluIleIleAlaGlySerPheGlyGlySerMetIleAlaGlyValThrSerP : 206 |||.!.:!!|||!!:||||||! ! !! ! !:!!:!:|||::!|||..! !.!!. IleLeuGlnIleMetAlaGlyPheValThrTyrAlaValIleSerGlyThrCysGlyM 204772 : ATACTGCAAATTATGGCTGGTTTTGTTACTTACGCTGTTATCAGCGGCACATGCGGTA : 204831 207 : heAsnLeuValValIleMetHisGlyAlaAlaArgPheSerLeuLeuGlnLysLysLe : 225 !. ! !:!! !!:!!:!:|||!.!..!::!! !.!.!!!:!!||| !!!.|||:! etCysAlaLeuPheValLeuHisAlaCysSerMetLeuArgIleLeuValAsnLysMe 204832 : TGTGCGCGCTGTTCGTTCTCCACGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGAT : 204888 226 : uGluSerLeu<->AsnArgAsnAspProAspValAsnLysLeuMetValLysCysIle : 243 !.!.:!!||| :!!!:! ||| ! !! !!.. :!! !||| ! ! tAsnAlaLeuValAspLysAlaAspMetThrGluThrLeuValHisArgLysIleAla 204889 : GAACGCACTTGTGGATAAGGCGGACATGACCGAGACACTTGTGCACAGGAAGATCGCT : 204945 244 : LysLeuHisGlnAspAlaIleLysPheAla{As} >>>> Target Intron 1 > : 254 ! :!! !:!! !! !! |||.!. !{ } 914 bp AspIleValGluTyrGlnThrLysIleLys{Ar}++ 204946 : GATATTGTTGAATATCAGACGAAGATAAAG{AG}gt...................... : 204982 255 : >>> {p}AlaLeuGluAspIleIleAsnValValAlaLeuGlyGlnPheValThrSe : 271 { } !:!!||| |||! !.!. !:!!..!||| !:!!.!.||| !.! +-{g}AsnIleGluThrIleThrGluTyrIleCysLeuThrGluMetValGlyGl 204983 : ...aa{G}AACATTGAAACAATTACAGAGTACATTTGTTTAACCGAAATGGTGGGCGG : 205943 272 : rThrGlyLeuValCysPheAlaGlyPheGlnLeuThrSerMetLeuGluAsp : 288 !|||||||||||||||.!!!.! !!:! ! :!! !! !:!:! !.!.||| yThrGlyLeuValCysLeuValTyrTyrTyrIleLeuMetValArgAsnAsp 205944 : TACGGGTCTAGTATGTCTCGTGTATTATTACATTCTCATGGTACGAAATGAT : 205996 vulgar: gi|528747912|gb|AGS43051.1| 17 288 . KQ414889.1 204251 205996 + 117 M 124 372 G 0 3 M 22 66 G 0 9 M 9 27 G 0 3 M 56 168 G 0 3 M 25 75 S 0 2 5 0 2 I 0 910 3 0 2 S 1 1 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204252 205996 117 + . gene_id 1 ; sequence gi|528747912|gb|AGS43051.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 204252 204979 . + . KQ414889.1 exonerate:protein2genome:local exon 204252 204979 . + . insertions 18 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 204980 204981 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 204980 205893 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 205892 205893 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 205894 205996 . + . KQ414889.1 exonerate:protein2genome:local exon 205894 205996 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 204252 205996 117 + . alignment_id 1 ; Query gi|528747912|gb|AGS43051.1| ; Align 204252 18 372 ; Align 204627 142 66 ; Align 204702 164 27 ; Align 204732 173 168 ; Align 204903 229 75 ; Align 205895 255 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747940|gb|AGS43065.1| odorant receptor Or3f [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 765 Query range: 4 -> 407 Target range: 284463 -> 287252 5 : IleGluGluPheLysIleLysThrAlaValGlnAsnLysAsnPheAspSerAspValG : 24 ||| !:!!.!. !:!: |||:!! ! :!!..!!..!::|||!!!||| ! IleProGlnMetAlaLeuValThrSerSerThrAspSerThrTrpAspThrAspTrpM 284464 : ATCCCACAAATGGCACTGGTCACTTCTTCAACCGATTCGACGTGGGACACGGATTGGA : 284521 25 : luTyrAlaIleLysLeuAsnArgTrpLeuLeuLysProPheGlyIleTrpProLeuAs : 43 !|||::!:!!:!!:!!|||||||||!!!|||||||||.!!|||:!!|||||||||!: etTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSe 284522 : TGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAG : 284578 44 : nSerSerSerThrLysPheAspArgGlyIleSerValIleSerSerPheIleCysCys : 62 ! !!!! !|||! !!.!!:!:! !! !||||||:!! !:!!!!.||| !!||| rLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCys 284579 : TCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGT : 284635 63 : LeuLeuLeuPhePheValMetIleProSerPheValValMetPheValSerGluLys< : 82 !!!|||:!! !|||:!!:!!:!!|||!!! !:!! !! ! :!!..!:!!! PheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrG 284636 : TTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCG : 284695 83 : ->AspPheLysGlyArgLeuGluIleValGlyProThrSerPheIleIleMetValVa : 100 |||.!! ! !!:!:!!:!!!!::!!|||||| !|||||| !!!:|||!.!!. lyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAl 284696 : GCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGC : 284752 101 : lLeuLysTyrPhePheLeuIleThrArgGlyAspThrLeuLysMetCysIleAspThr : 119 !:!!||||||!:!.!!||||||:!!||||||! !! !:!! ...|||:!: ! ! aIleLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAsp 284753 : GATCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGAC : 284809 120 : IleLeuGlyAspTrpSer<-><-><->AsnValGlnAlaLysGluGluArgLysIleM : 136 |||! !!.!||||||||| ::: !... :::|||||||||:::|||| IleArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleM 284810 : ATTCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatca : 284869 137 : etPheArgAsnAlaLysIleAlaArgLeuPheThrIleIleCysValSerPheMetTy : 155 || !!:!|||!:!|||!.!|||! !!!..!!|||.!!|||!.!.!!|||||||| etArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTy 284870 : TGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTA : 284926 156 : rCysGlyGlyIlePheTyrSerIlePheLeuProLeuIleThrAlaLysSerLeuThr : 174 |! !||||||.!!||||||!!!! ! :!!|||||| !|||!.!:::!!! !! ! rSerGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIle 284927 : TTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATC : 284983 175 : AsnGlyAsnAsnLeuThrIleArgIleLeuProTyrArgCysAsnPheIleIlePheA : 194 ! !! !|||.!. |||:!:||| !! ! !!!:!! ! ! !! ! !:!!.!!| IleAspAsnGlu---ThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuA 284984 : ATCGACAACGAG---ACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCG : 285040 195 : spProTyrArgArgProIlePheAspIleValTyrValValHisCysPheCysSerVa : 213 ||||| !! !!!!||| |||!!:|||||| ! !!:!!!!.|||!!...!:!! ! spProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPh 285041 : ATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTT : 285097 214 : lIleMetTyrSerIleThrThrGlyIleCysSerLeuAlaAlaLysPheValMetHis : 232 !:!!!!:||||||:!!|||..!||| !||||||||||||||| !|||||||||||| eValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHis 285098 : CGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCAC : 285154 233 : AlaCysGlyGlnCysGluIleValMetSerLeuLeuGluAsnLeuIleAspAspAspL : 252 !.!|||||||||! !..!|||:!!:!!!!! !|||!!:!!.|||:!!|||! ! | ValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValL 285155 : GTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGA : 285214 253 : ysGlnCysSerAspIleVal<-><->GluSerLysLeuAlaThrIleIleValGlnHi : 269 || ! ! !.!! :!: ! |||..!::!|||!.! !||||||! !!!.|| ysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHi 285215 : AAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCA : 285271 270 : sLeuHisValIle{Ar} >>>> Target Intron 1 >>>> {g}PheValThr : 277 |||| ! :!!:!:{ !} 1411 bp {!}|||:!!:!! sLeuLysIleLeu{Gl}++ ++{y}PheIleSer 285272 : TCTGAAGATACTG{GG}gt.........................ag{T}TTTATATCG : 286706 278 : ArgValGluAspLeuLeuAsnGluValCysLeuValGluPheLeuGlyCysThrMetA : 297 !:!:!!|||! ||||||||||||:!!|||!!!|||||| ! :!!|||||||||:!!| GlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuA 286707 : CAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGA : 286766 298 : snMetCysLeuValGlyTyrTyrIleIleThr >>>> Target Intron 2 >>> : 308 ||!!:|||!!!:!!|||||||||:!!:!:||| 80 bp snIleCysPheLeuGlyTyrTyrLeuLeuThr++ 286767 : ACATATGCTTTTTGGGATATTATTTACTGACGgt........................ : 286801 309 : > GlyPheGluSerAlaAspThrValArgPheIleThrPheThrLeuLeuPheIleS : 326 ! !!::|||..!::!!!:|||:!! !! ||||||!:! ! !|||.!.:!!| ++GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValS 286802 : .agGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTAT : 286933 327 : erPheThrPheAsnIlePheValPheCysTyrIleGlyGlnIleLeuThrAsnHis : 345 ||||||||||||||:!!|||:!!.!!||||||||||||:!!||||||:!!.!.!.. erPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286934 : CTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt : 286990 346 : >>>> Target Intron 3 >>>> CysHisGlnIleGlyGluAlaSerTyrMetI : 355 74 bp ||| :!!:!!||| !:!!!!!||||||| ++CysLeuLysValGlyLeuSerThrTyrMetI 286991 : .........................agtGCTTAAAAGTCGGCTTGTCAACTTACATGA : 287094 356 : leAspTrpTyrArgPheProGlyThrGlnAlaArgPheLeuIleLeuLeuIleGlyVa : 374 ||||||||||||||!!.||||||! ! !|||!:! !|||||||||:!!.!!!.!|| leAspTrpTyrArgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaVa 287095 : TCGACTGGTATCGTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGT : 287151 375 : lAlaAsnArgProIleArgLeuThrAlaGlyLysMetValGlnPheSerPheProCys : 393 |:!!||| ! !!|||!:!|||||||||||||||!!::!!.!..!!|||!!. ! !! lSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSer 287152 : GTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGC : 287208 394 : PheCysAsnValIleLysAlaAlaMetAlaTyrLeuAsnIle : 407 ||||||!:!|||! !! ! !:!::!!|||! !:!!:!: PheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 287209 : TTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 287252 vulgar: gi|528747940|gb|AGS43065.1| 4 407 . KQ414889.1 284463 287252 + 765 M 77 231 G 0 3 M 44 132 G 0 9 M 53 159 G 1 0 M 79 237 G 0 6 M 15 45 S 0 2 5 0 2 I 0 1407 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284464 287252 765 + . gene_id 1 ; sequence gi|528747940|gb|AGS43065.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284464 285287 . + . KQ414889.1 exonerate:protein2genome:local exon 284464 285287 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 285288 285289 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 285288 286698 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284464 287252 765 + . alignment_id 1 ; Query gi|528747940|gb|AGS43065.1| ; Align 284464 5 231 ; Align 284698 82 132 ; Align 284839 126 159 ; Align 284998 180 237 ; Align 285241 259 45 ; Align 286700 275 99 ; Align 286879 308 111 ; Align 287064 345 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747940|gb|AGS43065.1| odorant receptor Or3f [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 760 Query range: 17 -> 412 Target range: 217153 -> 219803 18 : AsnPheAspSerAspValGluTyrAlaIleLysLeuAsnArgTrpLeuLeuLysProP : 37 .!.::::::...::::::... ::!|||:!!! !|||||||||||||||||||||. GluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProM 217154 : GAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGA : 217211 38 : heGlyIleTrpProLeuAsnSerSerSerThrLysPheAspArgGlyIleSerValIl : 56 !.|||:!!|||||| !::: !!!!!!!!|||!:!! ! !:! !:!!! ! !:! etGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLe 217212 : TGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACT : 217268 57 : eSerSerPheIleCysCysLeuLeuLeuPhePheValMetIleProSerPheValVal : 75 :! !!:! !:!!|||! ! !|||:!! !|||:!!.!.:!!|||!!!! !:!! ! uIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyr 217269 : GATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTAC : 217325 76 : MetPheValSerGluLysAspPheLysGlyArgLeuGluIleValGlyProThrSerP : 95 :!!|||:!!..!! :!!|||.!! ! ! !!:!|||:!!:!: !!|||||| !! !| ValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIleP 217326 : GTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCT : 217385 96 : heIleIleMetValValLeuLysTyrPhePheLeuIleThrArgGlyAspThrLeuLy : 114 || !:!:|||!.! !!:!!||||||!:!! !||||||..!!.! !! !:!!:: heCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleAr 217386 : TCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCG : 217442 115 : sMetCysIleAspThrIleLeuGlyAspTrpSerAsnValGlnAlaLysGluGluArg : 133 : !|||:!: ! !||| ! !!||||||!!!||||||::!..!:!!:!!!!:||| gGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArg 217443 : CGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGG : 217499 134 : LysIleMetPheArgAsnAlaLysIleAlaArgLeuPheThrIleIleCysValSerP : 153 :!! |||.!. !||||||!!..!!!.!||| !!!...!:!!:!!|||..!! !| GluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPheP 217500 : GAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCT : 217559 154 : heMetTyrCysGlyGlyIlePheTyrSerIlePheLeuProLeuIleThrAlaLysSe : 172 |||||||| !!||| :::|||||| ||| !:!!|||:!!! !..!!.!!:!! heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIl 217560 : TCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAAT : 217616 173 : rLeuThrAsnGlyAsnAsnLeuThrIleArgIleLeuProTyrArgCysAsnPheIle : 191 !|||:!!.!...!...|||||||||.!!! ! ||| !!:!! !! !!.. ! eLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyr 217617 : TCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTAT : 217673 192 : IlePheAspProTyrArgArgProIlePheAspIleValTyrValValHisCysPheC : 211 |||.!!||| !! ! !! !|||! !!!:||||||!:! !!:!!!!.! .!!. IleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleA 217674 : ATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCG : 217733 212 : ysSerValIleMetTyrSerIleThrThrGlyIleCysSerLeuAlaAlaLysPheVa : 230 .!.!!!.!:!:|||:!!.!!||||||:!!!.! !||||||||||||||| |||!. laGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAl 217734 : CTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGC : 217790 231 : lMetHisAlaCysGlyGlnCysGluIleValMetSerLeuLeuGluAsnLeuIleAsp : 249 !:!:||||||||||||||| !|||:!::!!|||!:!! !|||:!!:!!||||||||| aValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAsp 217791 : GGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGAC : 217847 250 : AspAspLysGlnCysSerAspIleValGluSerLysLeuAlaThrIleIleValGlnH : 269 ! ! !.!. ||||||! !|||!!:.!!!:!:!!|||!:!|||:!! !|||| GlyArgAlaAspMetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnH 217848 : GGTAGAGCGGATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAAC : 217907 270 : isLeuHisValIle{Ar} >>>> Target Intron 1 >>>> {g}PheValTh : 277 ||:!!!..:!!:!!{!:} 1229 bp {!}|||:::|| isValArgIleLeu{Ly}++ ++{s}PheLeuTh 217908 : ACGTTCGGATATTA{AA}gt.........................ag{a}tttttgaC : 219160 278 : rArgValGluAspLeuLeuAsnGluValCysLeuValGluPheLeuGlyCysThrMet : 296 |! !..!||| !|||.!.:!!:!!! !!!!!.!||||||||||||||||||||| rLeuThrGluArgThrLeuGlnGlnIleSerPheAlaGluPheLeuGlyCysThrMet 219161 : GCTCACAGAGAGAACCCTCCAGCAAATCTCTTTCGCTGAATTTCTAGGATGCACCATG : 219217 297 : AsnMetCysLeuValGlyTyrTyrIleIleThr >>>> Target Intron 2 >> : 308 :!!!!:||||||||||||||||||||||||..! 76 bp AspIleCysLeuValGlyTyrTyrIleIleVal++ 219218 : GACATATGTCTCGTTGGATATTACATTATCGTGgt....................... : 219255 309 : >> GlyPheGluSerAlaAspThrValArgPheIleThrPheThrLeuLeuPheIle : 325 ! !!:::!!||| !|||..!..!!!! :!:|||!:!! !:!!|||.!!||| ++GluTrpLysSerAsnAspValThrSerAlaValThrTyrIleIleLeuLeuIle 219256 : ..agGAATGGAAATCGAATGATGTAACGAGTGCAGTGACATACATCATTCTACTTATA : 219380 326 : SerPheThrPheAsnIlePheValPheCysTyrIleGlyGlnIleLeuThrAsnHis : 345 |||.!.|||||||||||||||:::|||||||||||||||:!!|||:!!.!!.!.!!. SerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluIleValAlaGluGln+ 219381 : TCCCTcactttcaacattttcatattttgctaCATAGGAGAGATCGTTGCTGAACAgg : 219440 346 : >>>> Target Intron 3 >>>> CysHisGlnIleGlyGluAlaSerTyrMet : 354 73 bp |||...:::||||||||| ||||||||| + ++CysArgLysIleGlyGluMetSerTyrMet 219441 : t.........................agTGtaggaaaattggagaaatgtCGTACATG : 219540 355 : IleAspTrpTyrArgPheProGlyThrGlnAlaArgPheLeuIleLeuLeuIleGlyV : 374 |||!!:|||||||||!!. !!|||! !:!! !! !!:: !:!!||| !|||!.!: IleGluTrpTyrArgLeuThrGlyLysLysLysLeuTrpSerValLeuThrIleAlaM 219541 : ATCGAATGGTACCGATTGACAGGAAAGAAAAAGCTCTGGAGCGTTTTGACAATCGCTA : 219600 375 : alAlaAsnArgProIleArgLeuThrAlaGlyLysMetValGlnPheSerPheProCy : 393 !!:!!||| ! !!|||!:!||||||||||||!!.||||||:!!!!.|||.!! ! etSerAsnSerSerIleLysLeuThrAlaGlyAsnMetValGluLeuSerIleSerTh 219601 : TGTCGAATTCCTCGATAAAATTGACAGCCGGAAATATGGTCGAATTGTCTATCAGCAC : 219657 394 : sPheCysAsn >>>> Target Intron 4 >>>> ValIleLysAlaAlaMetA : 403 !||| !:!! 87 bp |||:!!|||.!!|||:!:. rPheThrAsp++ ++ValValLysThrAlaValT 219658 : TTTTACCGACgt.........................agGTCGTTAAGACTGCAGTCA : 219774 404 : laTyrLeuAsnIleIleArgThrValThr : 412 !!!:!||||||:!!:!!||||||:!!||| hrPheLeuAsnValLeuArgThrLeuThr 219775 : CGTTTCTGAATGTACTACGAACATTGACT : 219803 vulgar: gi|528747940|gb|AGS43065.1| 17 412 . KQ414889.1 217153 219803 + 760 M 256 768 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 37 111 5 0 2 I 0 69 3 0 2 M 52 156 5 0 2 I 0 83 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217154 219803 760 + . gene_id 2 ; sequence gi|528747940|gb|AGS43065.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217154 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217154 217923 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219668 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219668 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219669 219670 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219669 219755 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 219754 219755 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219756 219803 . + . KQ414889.1 exonerate:protein2genome:local exon 219756 219803 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217154 219803 760 + . alignment_id 2 ; Query gi|528747940|gb|AGS43065.1| ; Align 217154 18 768 ; Align 219154 275 99 ; Align 219329 308 111 ; Align 219513 345 156 ; Align 219756 397 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747940|gb|AGS43065.1| odorant receptor Or3f [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 728 Query range: 15 -> 397 Target range: 208185 -> 211932 16 : AsnLysAsnPheAspSerAspValGluTyrAlaIleLysLeuAsnArgTrpLeuLeuL : 35 |||!:!|||!:! ! !:!|||:!!...!:! !:!!:::|||||| !||| !|||| AsnArgAsnTyrLysAsnAspLeuSerPheAsnValArgLeuAsnValTrpThrLeuL 208186 : AACAGAAACTACAAGAACGATCTGAGCTTCAACGTTCGTCTGAACGTGTGGACGTTGA : 208243 36 : ysProPheGlyIleTrpProLeuAsnSerSerSerThrLysPheAspArgGlyIleSe : 54 || !.!!||| !|||||| !::!! !..! !!:!! !!!.!!:!.!.!! ysIleIleGlySerTrpProArgSerIleAspArgSerTrpLeuGluAsnSerGlnHi 208244 : AGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGTTAGAGAACAGCCAGCA : 208300 55 : rValIleSerSerPheIleCysCysLeuLeuLeuPhePheValMetIleProSerPhe : 73 !:!!:!!! !!:! ! :!! !! !! !|||||| !|||:!!:!!||||||!!! ! sIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIleValIleProThrGly 208301 : TATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCATCGTGATACCGACCGGC : 208357 74 : ValValMetPheValSerGluLysAspPheLysGlyArgLeuGluIleValGlyProT : 93 :!! !! !.!!:!! !! :!!|||||| ! ! !!:!|||:!!||| !.!! !! MetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaL 208358 : ATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTC : 208417 94 : hrSerPheIleIleMetValValLeuLysTyrPhePheLeuIleThrArgGlyAspTh : 112 !||||||.!!!!:|||!.! !! !|||||| ! .!!:!!! !..!|||! !! ! euSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAs 208418 : TGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGA : 208474 113 : rLeuLysMetCysIleAspThrIleLeuGlyAspTrpSerAsnValGlnAlaLysGlu : 131 !:!!::!! !|||:!!!!: !:!! !!.!||||||!!!||||||:!! !:!!||| pIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGlu 208475 : CATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAG : 208531 132 : GluArgLysIleMetPheArgAsnAlaLysIleAlaArgLeuPheThrIleIleCysV : 151 !!:||||||||||||!!. !||||||!...!!|||||| !.!.! !:!:||||||! AspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysG 208532 : GACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCG : 208591 152 : alSerPheMetTyrCysGlyGlyIlePheTyrSerIlePheLeuProLeuIleThrAl : 170 !:!!||||||||| ! ||| ||||||||| ||| !|||||||||! ! !! lyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAs 208592 : GAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGA : 208648 171 : aLysSerLeuThrAsnGlyAsnAsnLeuThrIleArgIleLeuProTyrArgCysAsn : 189 !||| !:!! !.!.|||..!||||||||| !|||! ||| !|||! ! ! ! pLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeuValTyrProValPro 208649 : CAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTGGTTTATCCTGTTCCT : 208705 190 : PheIleIlePheAspProTyrArgArgProIlePheAspIleValTyrValValHisC : 209 .!!|||.!.||| ! !!!!|||:!: !!!:||| !!|||..!|||!!.! LysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValGlnL 208706 : AAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTACAAT : 208765 210 : ysPheCysSerValIleMetTyrSerIleThrThrGlyIleCysSerLeuAlaAlaLy : 228 !!.! .!! !!:!! :!!!:!||||||..!||| !|||.!!||||||||| euLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAlaLe 208766 : TGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGCGCT : 208822 229 : sPheValMetHisAlaCysGlyGlnCysGluIleValMetSerLeuLeuGluAsnLeu : 247 !.!!!.!|||||||||||||||||| :!!|||:!!||||||! !:!!|||!!.||| uLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLysLeu 208823 : GCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAGTTG : 208879 248 : IleAspAspAspLysGlnCysSerAspIleValGluSerLysLeuAlaThrIleIleV : 267 :!!|||! :!!.!. ..! ! ! !:!!!!:..!!:!||||||!.!|||:!:! ValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleValG 208880 : GTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCGTGG : 208939 268 : alGlnHisLeuHisValIle{Ar} >>>> Target Intron 1 >>>> {g}Ph : 275 !||||||:!!!..||||||{!.} 1536 bp {!}|| luGlnHisValArgValIle{As}++ ++{n}Ph 208940 : AGCAGCATGTTCGAGTGATC{AA}gt.........................ag{T}TT : 210499 276 : eValThrArgValGluAspLeuLeuAsnGluValCysLeuValGluPheLeuGlyCys : 294 |:!!.!!! !..!|||:!!||||||:!!|||:!!! |||:!!|||.!.:!!|||||| eIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIleGluMetValGlyCys 210500 : TATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGATAGAAATGGTGGGGTGC : 210556 295 : ThrMetAsnMetCysLeuValGlyTyrTyrIleIleThr >>>> Target Intro : 308 |||:!!|||||||||!!!:!!|||||||||! !!:! ! 66 bp ThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle++ 210557 : ACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATTgt................. : 210600 309 : n 2 >>>> GlyPheGluSerAlaAspThrValArgPheIleThrPheThrLeuLeu : 323 ! !!::!!:||| !||| !!:!!!!! !:!:|||!:!! !:!!||| ++GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValLeu 210601 : ........agGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTACTC : 210709 324 : PheIleSerPheThrPheAsnIlePheValPheCysTyrIleGlyGlnIleLeuThrA : 343 .!!! !||| !!|||||||||||||||:!!|||||||||||||||:!!:!:|||.!!. LeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAlaG 210710 : CTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGCTG : 210769 344 : snHis >>>> Target Intron 3 >>>> CysHisGlnIleGlyGluAlaSer : 352 !.!!. 999 bp :!!:!!|||||| !||| luGln++ ++ThrValLysValGlyGluLysSer 210770 : AACAggt.........................agACAGTAAAAGTTGGAGAAAAGTCT : 211795 353 : TyrMetIleAspTrpTyrArgPheProGlyThrGlnAlaArgPheLeuIleLeuLeuI : 372 |||||||||||||||||||||.!.||||||! !:!!!.! ! !!:!! !|||:!!| TyrMetIleAspTrpTyrArgMetProGlyLysLysGlyLeuValValProLeuMetI 211796 : TACATGATCGACTGGTATCGAATGCCAGGAAAGAAAGGTTTGGTCGTACCCTTGATGA : 211855 373 : leGlyValAlaAsnArgProIleArgLeuThrAlaGlyLysMetValGlnPheSerPh : 391 ||..!:!!:!!:!! ! !!! !!:!:!!|||||||||!!.:!::!! .!!|||.! leSerMetSerHisSerThrThrLysIleThrAlaGlyAsnLeuIleValLeuSerIl 211856 : TCTCCATGTCACATTCGACCACCAAAATCACCGCTGGCAATCTCATCGTTCTTTCAAT : 211912 392 : eProCysPheCysAsnVal : 397 ! ! !!||| !!:!!||| eSerSerPheGlyAspVal 211913 : CAGTAGTTTCGGTGACGTA : 211932 vulgar: gi|528747940|gb|AGS43065.1| 15 397 . KQ414889.1 208185 211932 + 728 M 258 774 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 995 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208186 211932 728 + . gene_id 3 ; sequence gi|528747940|gb|AGS43065.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208186 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208186 208961 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211932 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211932 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208186 211932 728 + . alignment_id 3 ; Query gi|528747940|gb|AGS43065.1| ; Align 208186 16 774 ; Align 210499 275 99 ; Align 210664 308 111 ; Align 211774 345 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747940|gb|AGS43065.1| odorant receptor Or3f [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 728 Query range: 4 -> 407 Target range: 278516 -> 280465 5 : IleGluGluPheLysIleLysThrAlaValGlnAsnLysAsnPheAspSerAspValG : 24 ||| !:!!.!. !:!: |||:!! ! :!!..!!..!:::!!!!!||| ! IleProGlnMetAlaLeuValThrSerSerThrAspSerThrTrpAsnThrAspTrpM 278517 : ATCCCACAAATGGCACTGGTCACTTCGTCAACCGATTCGACGTGGAACACGGATTGGA : 278574 25 : luTyrAlaIleLysLeuAsnArgTrpLeuLeuLysProPheGlyIleTrpProLeuAs : 43 !|||::!:!!:!!:!!|||||||||!!!|||||||||.!!|||:!!|||||||||!: etTyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSe 278575 : TGTACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAG : 278631 44 : nSerSerSerThrLysPheAspArgGlyIleSerValIleSerSerPheIleCysCys : 62 ! !!!! !|||! !!.!!:!:! !! !||||||:!! !:!!!!.||| !!||| rLeuCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCys 278632 : TCTCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGC : 278688 63 : LeuLeuLeuPhePheValMetIleProSerPheValValMetPheValSerGluLys< : 82 !!!|||:!! !|||:!!:!!:!!|||!!! !:!! !! ! :!!..!:!!! PheLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrG 278689 : TTCCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCG : 278748 83 : ->AspPheLysGlyArgLeuGluIleValGlyProThrSerPheIleIleMetValVa : 100 |||.!! ! !!:!:!!:!!!!::!!|||||| !|||||| !! |||!.!.. lyAspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaTh 278749 : GCGATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAAC : 278805 101 : lLeuLysTyrPhePheLeuIleThrArgGlyAspThrLeuLysMetCysIleAspThr : 119 !:!!||||||!:!.!!|||!!::!!||||||! !! !:!! ! |||:!::!! ! rIleLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAsp 278806 : GATCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGAC : 278862 120 : IleLeuGlyAspTrpSer<-><-><->AsnValGlnAlaLysGluGluArgLysIleM : 136 |||! ! !||||||||| ::: !!:: :::|||||||||:::|||| IleArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleM 278863 : ATTCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatca : 278922 137 : etPheArgAsnAlaLysIleAlaArgLeuPheThrIleIleCysValSerPheMetTy : 155 || !!:!|||!:!|||!.!|||! !!!..!!|||.!! !!!.!.!!|||||||| etArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTy 278923 : TGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTA : 278979 156 : rCysGlyGlyIlePheTyrSerIlePheLeuProLeuIleThrAlaLysSerLeuThr : 174 |! !||||||:!!||||||!!! ! ! :!!||||||.!!.!!!.!:::!!! !! ! rSerGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIle 278980 : TTCCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATC : 279036 175 : AsnGlyAsnAsnLeuThrIleArgIleLeuProTyrArgCysAsnPheIleIlePheA : 194 ! !! !|||.!. |||:!:||| !! ! !!!:!! ! ! !! ! !:!!.!!| IleAspAsnGlu---ThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuA 279037 : ATCGACAATGAA---ACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCG : 279093 195 : spProTyrArgArgProIlePheAspIleValTyrValValHisCysPheCysSerVa : 213 ||||| !! !!!!||| |||!!:|||||| ! !!:!!!!.|||!!...!:!! ! spProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPh 279094 : ATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTT : 279150 214 : lIleMetTyrSerIleThrThrGlyIleCysSerLeuAlaAlaLysPheValMetHis : 232 !:!!:!:||||||:!!|||..!||| !||||||||| !||| !|||||||||||| eValLeuTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHis 279151 : CGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCAC : 279207 233 : AlaCysGlyGlnCysGluIleValMetSerLeuLeuGluAsnLeuIleAspAspAspL : 252 !.!|||||||||! !..!|||:!!:!!!!! !|||!!:!!.|||||||||! ! | ValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValL 279208 : GTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGA : 279267 253 : ysGlnCysSerAspIleVal<-><->GluSerLysLeuAlaThrIleIleValGlnHi : 269 || ! ! !.!..!:!: ! |||..!::!|||!.! !||||||! !!!.|| ysGlyArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHi 279268 : AAGGGAGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCA : 279324 270 : sLeuHisValIle{Ar} >>>> Target Intron 1 >>>> {g}PheValThr : 277 |||| ! :!!:!:{ !} 571 bp {!}|||:!!:!! sLeuLysIleLeu{Gl}++ ++{y}PheIleSer 279325 : TCTGAAGATACTG{GG}gt.........................ag{T}TTTATATCG : 279919 278 : ArgValGluAspLeuLeuAsnGluValCysLeuValGluPheLeuGlyCysThrMetA : 297 !:!:!!|||! ||||||||||||:!!|||!!!|||||| ! :!!|||||||||:!!| GlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuA 279920 : CAAATCGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGA : 279979 298 : snMetCysLeuValGlyTyrTyrIleIleThr >>>> Target Intron 2 >>> : 308 ||!!:|||!!!:!! !||||||:!!:!!||| 80 bp snIleCysPheLeuThrTyrTyrLeuLeuThr++ 279980 : ACATATGCTTTTTGACATATTATTTACTCACGgt........................ : 280014 309 : > GlyPheGluSerAlaAspThrValArgPheIleThrPheThrLeuLeuPheIleS : 326 ! !!::|||..! !|||.!!:!! !! .!!|||!:! !:!!!!!.!!|||| ++GluTrpGluGlnAsnAspAlaIleGlyThrPheThrTyrLeuMetPheLeuIleS 280015 : .agGAATGGGAGCAAAATGACGCTATAGGAACGTTCACGTATTTAATGTTTCTCATAT : 280146 327 : erPheThrPheAsnIlePheValPheCysTyrIleGlyGlnIleLeuThrAsnHis : 345 ||!!.|||||||||:!!|||:!!.!!||||||||||||:!!||||||:!!.!.!.. erLeuThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 280147 : CTTTAACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt : 280203 346 : >>>> Target Intron 3 >>>> CysHisGlnIleGlyGluAlaSerTyrMetI : 355 74 bp ||| :!!:!!|||! !:!!!!!||||||| ++CysLeuLysValGlyValSerThrTyrMetI 280204 : .........................agTGCTTAAAAGTCGGCGTGTCAACTTACATGA : 280307 356 : leAspTrpTyrArgPheProGlyThrGlnAlaArgPheLeuIleLeuLeuIleGlyVa : 374 ||||||||||||||!!.||||||! !:!!|||!:! !|||||||||:!!.!!!.!|| leAspTrpTyrArgLeuProGlyLysLysAlaGlnGlyLeuIleLeuIlePheAlaVa 280308 : TCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAGGTTTGATACTGATATTCGCCGT : 280364 375 : lAlaAsnArgProIleArgLeuThrAlaGlyLysMetValGlnPheSerPheProCys : 393 |:!!||| ! !!|||!:!|||||||||||||||!!::!!.!..!!|||!!. ! !! lSerAsnSerSerIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSer 280365 : GTCGAATTCTTCCATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGC : 280421 394 : PheCysAsnValIleLysAlaAlaMetAlaTyrLeuAsnIle : 407 ||||||!:!|||! !! ! !:!::!!|||! !:!!:!: PheCysSerValSerIleIleAsnLeuSerTyrTyrHisLeu 280422 : TTCTGCAGCGTGAGTATCATAAATTTATCCTATTATCATTTG : 280465 vulgar: gi|528747940|gb|AGS43065.1| 4 407 . KQ414889.1 278516 280465 + 728 M 77 231 G 0 3 M 44 132 G 0 9 M 53 159 G 1 0 M 79 237 G 0 6 M 15 45 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278517 280465 728 + . gene_id 4 ; sequence gi|528747940|gb|AGS43065.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278517 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278517 279340 . + . insertions 18 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278517 280465 728 + . alignment_id 4 ; Query gi|528747940|gb|AGS43065.1| ; Align 278517 5 231 ; Align 278751 82 132 ; Align 278892 126 159 ; Align 279051 180 237 ; Align 279294 259 45 ; Align 279913 275 99 ; Align 280092 308 111 ; Align 280277 345 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747940|gb|AGS43065.1| odorant receptor Or3f [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 679 Query range: 8 -> 406 Target range: 226882 -> 230433 9 : LysIleLysThrAlaValGlnAsnLysAsnPheAspSerAspValGluTyrAlaIleL : 28 !!.:!! !:!! !!.! !.!.!!.:!!!:!.!...! !!:!!.!. ::!|||: AsnLeuAlaSerLeuAlaThrGluAsnAspTyrGlnGluTyrLeuAsnLeuSerIleG 226883 : AACCTCGCGTCTCTCGCGACAGAGAACGACTATCAGGAATACTTGAACCTGAGCATAC : 226940 29 : ysLeuAsnArgTrpLeuLeuLysProPheGlyIleTrpProLeuAsnSerSerSerTh : 47 !!||||||||||||||||||||||||.!!||||||||||||! !::: !!!.!|||:! lnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgLysSerSe 226941 : AGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCAAAAGCTC : 226997 48 : rLysPheAspArgGlyIleSerValIleSerSerPheIleCysCysLeuLeuLeuPhe : 66 !::!.!.! ||| !!.!!||| !:!:! !.!!|||:!!|||! ! !|||:!! ! rArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLeuMetSer 226998 : TCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCTGATGAGC : 227054 67 : PheValMetIleProSerPheValValMetPheValSerGluLysAspPheLysGlyA : 86 |||! !:!!:!! !!||| !:!! !:!! !!:!!..!! !|||! ! ! ! ..!! PheGluLeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAlaTyrAsnT 227055 : TTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCTTACAACA : 227114 87 : rgLeuGluIleValGlyProThrSerPheIleIleMetValValLeuLysTyrPhePh : 105 !|||:!!!!::!!||||||! !||||||.!! ||| !:!!|||||||||! !.! hrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuLysTyrSerMe 227115 : CGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGTACTCCAT : 227171 106 : eLeuIleThrArgGlyAspThrLeuLysMetCysIleAspThrIleLeuGlyAspTrp : 124 .|||! !!.!! !||| !:!! !|||:!!!!: !||| ! !!|||||| tLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIleLysTrpAspTrp 227172 : GTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATGGGACTGG : 227228 125 : SerAsnValGlnAlaLysGluGluArgLysIleMetPheArgAsnAlaLysIleAlaA : 144 !.!|||:!!::! ! !|||!!:|||!!.:!:||| ! ! ! !!||| ! !!.!| LysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyrTyrGlyA 227229 : AAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTATTACGGAA : 227288 145 : rgLeuPheThrIleIleCysValSerPheMetTyrCysGlyGlyIlePheTyrSerIl : 163 || !!!.! !! !||||||..!! !|||:!:!:! ... :::|||::: || rgLysLeuIleThrIleCysThrPhePheValPheSerSerPheValPhePheTyrIl 227289 : GAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttttctacAT : 227345 164 : ePheLeuProLeuIleThrAlaLysSerLeuThrAsnGlyAsnAsnLeuThrIleArg : 182 | !!:!!|||:!!! !.!!!.!!.. ! !|||.!.! !...|||! !!:! !! ! eValValProIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSerTyrIle 227346 : CGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAGTTACATT : 227402 183 : IleLeuProTyrArgCysAsnPheIleIlePheAspProTyrArgArgProIlePheA : 202 :!!|||!:!! !! ! |||||| !||| ! ! !!!!|||.!! !! GlnMetProPheProPheProLysIleIleAlaAspValArgTyrSerProPheAsnG 227403 : CAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCTTTCAACG : 227462 203 : spIleValTyrValValHisCysPheCysSerValIleMetTyrSerIleThrThrGl : 221 !:||| !!!:! !|||!!.! ! ! .!!:!!:!::!!:!!.!!:!!|||:!!!. luIlePhePheSerValGlnPheValThrGlyIleValLeuHisGlyValThrSerAl 227463 : AGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCACGTCAGC : 227519 222 : yIleCysSerLeuAlaAlaLysPheValMetHisAlaCysGlyGlnCysGluIleVal : 240 ! !||||||:!!|||||| !.!!!.!:!:||||||||||||||| |||:!::!! aAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGluValLeu 227520 : TGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGAGGTGTTG : 227576 241 : MetSerLeuLeuGluAsnLeuIleAspAspAspLysGlnCysSerAspIleValGluS : 260 :!!|||! !|||! !:!!|||||||||! ! !.!. ||| ! ! !:!!!!:. ValSerTrpLeuGlyHisLeuIleAspGlyArgAlaAspMetSerLysThrLeuAspA 227577 : GTGTCCTGGCTGGGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACACTGGATG : 227636 261 : erLysLeuAlaThrIleIleValGlnHisLeuHisValIle{Ar} >>>> Target : 274 .!!:!:!!|||!:!|||:!!..!!!.|||:!!!..:!!:!:{!.} 3 spArgIleAlaSerIleValThrHisHisValArgIleLeu{As}++ 227637 : ATAGAATCGCTAGCATCGTCACTCACCACGTTCGAATATTG{AA}gt........... : 227682 275 : Intron 1 >>>> {g}PheValThrArgValGluAspLeuLeuAsnGluValCys : 287 96 bp {!}|||:!!.!!! !:!!||| ! !:!!.!.:!!:!!..! ++{n}PheLeuAlaLeuIleGluLysThrMetGlnGlnIleAla 227683 : ..............ag{C}TTTCTGGCCCTCATAGAGAAAACCATGCAGCAAATAGCT : 228113 288 : LeuValGluPheLeuGlyCysThrMetAsnMetCysLeuValGlyTyrTyrIleIleT : 307 !!!|||||||||||||||||||||!!:! !:!!||||||:!!! !||||||||||||| PheValGluPheLeuGlyCysThrIleIleLeuCysLeuIleGluTyrTyrIleIleT 228114 : TTCGTAGAATTTTTAGGGTGTACAATAATTCTGTGCCTCATCGAGTATTACATCATAA : 228173 308 : hr >>>> Target Intron 2 >>>> GlyPheGluSerAlaAspThrValArg : 316 || 72 bp ! !!::.!. !! !!!: !..! ! hr++ ++GluTrpAsnProLysGluLeuThrPhe 228174 : CGgt.........................agGAATGGAATCCGAAAGAGTTAACATTT : 228272 317 : PheIleThrPheThrLeuLeuPheIleSerPheThrPheAsnIlePheValPheCysT : 336 !:!!|||!:!:!! !|||.!!:!!|||||||||||||||||||||:::||||||| AlaValThrTyrSerAlaLeuLeuLeuSerPheThrPheAsnIlePheIlePheCysT 228273 : GCTGTAACTTACTCAGCGTTACTTTTATCCTTTAccttcaatattttcatattttgtt : 228332 337 : yrIleGlyGlnIleLeuThrAsnHis >>>> Target Intron 3 >>>> Cys : 345 ||||||||:!!|||:!!.!!.!.||| 1889 bp ||| yrIleGlyGluIleValAlaGluHis++ ++Cys 228333 : aTATAGGAGAAATTGTTGCCGAACACgt.........................agTGC : 230248 346 : HisGlnIleGlyGluAlaSerTyrMetIleAspTrpTyrArgPheProGlyThrGlnA : 365 ...:!!:!!|||||| !||||||||||||!!:|||||||||!!. !!|||!.!:!! ArgLysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuThrGlyAsnLysL 230249 : AGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAACCGGAAACAAGA : 230308 366 : laArgPheLeuIleLeuLeuIleGlyValAlaAsnArgProIleArgLeuThrAlaGl : 384 !! !! !! !||||||:!!|||!.!:!!:!!||| !! !!! !:!!!!|||||||| ysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLysPheThrAlaGl 230309 : AGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAAATTTACAGCAGG : 230365 385 : yLysMetValGlnPheSerPheProCysPheCysAsnValIleLysAlaAlaMetAla : 403 |!!.||||||:!!!!.||| ! ! !||| !!:!!|||! !! ! ! !.! yAsnMetValGluLeuSerValAsnThrPheSerAspValSerIleIlePheSerVal 230366 : AAACATGGTTGAATTATCCGTAAACACTTTCAGCGACGTAAGTATCATATTCTCTGTT : 230422 404 : TyrLeuAsn : 406 ||| !||| TyrThrAsn 230423 : TACACGAAT : 230433 vulgar: gi|528747940|gb|AGS43065.1| 8 406 . KQ414889.1 226882 230433 + 679 M 265 795 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 37 111 5 0 2 I 0 1885 3 0 2 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226883 230433 679 + . gene_id 5 ; sequence gi|528747940|gb|AGS43065.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226883 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226883 227679 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228359 228360 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228359 230247 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 230246 230247 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 230248 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230248 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226883 230433 679 + . alignment_id 5 ; Query gi|528747940|gb|AGS43065.1| ; Align 226883 9 795 ; Align 228077 275 99 ; Align 228248 308 111 ; Align 230248 345 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747940|gb|AGS43065.1| odorant receptor Or3f [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 506 Query range: 13 -> 397 Target range: 299656 -> 302036 14 : ValGlnAsnLysAsnPheAspSerAspValGluTyrAlaIleLysLeuAsnArgTrpL : 33 :!!::!||| ! :!!!:!.!.!:!|||:!!.!.|||.!!:!::!!:!! !!:!|||| LeuArgAsnTyrHisTyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpL 299657 : TTGAGGAATTACCATTACCAAAATGACATACATTACACGCTGCAAATGTGCCAATGGT : 299714 34 : euLeuLysProPheGlyIleTrpPro<->LeuAsnSerSerSerThrLysPheAspAr : 51 |||||||||||.!!|||:!!|||! ! |||:!!..! !!|||!:!|||.!.!!:!. euLeuLysProIleGlyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHi 299715 : TGTTGAAACCTATCGGAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACA : 299771 52 : gGlyIleSerValIleSerSerPheIleCysCysLeuLeuLeuPhePheValMetIle : 70 ! !:!!|||:!!:!! !! ! ||||||! !! ! !|||||||||:!!:!::!: sLeuValSerIleValLeuMetThrIleCysPheSerSerLeuPhePheIleValLeu 299772 : CCTCGTCTCGATCGTTCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTG : 299828 71 : ProSerPheValValMetPheValSerGluLysAspPheLysGlyArgLeuGluIleV : 90 |||||| ! ! !!!:||| !!:!!||||||..!.!. ! ! !!:!:!!:!!:!! ProSerGlyHisTyrIlePhePheAlaGluLysSerIleHisValLysValLysValP 299829 : CCATCCGGTCATTACATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTAT : 299888 91 : alGlyProThrSerPheIleIleMetValValLeuLysTyrPhePheLeuIleThrAr : 109 !!||||||..!.!!||| !:!! !:!!:!!||||||! !!:!||| ! !!. heGlyProValGlyPheCysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAs 299889 : TCGGTCCGGTTGGTTTTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAA : 299945 110 : gGlyAspThrLeuLysMetCysIleAspThrIleLeuGlyAsp--TrpSerAsnValG : 128 !|||! !.!!!!!:!! ||||||.!. !:!! ! !!|||## ... nGlyGlyAlaPheGluArgCysIleGlnHisValGluArgAsp##---UnkUnkUnkU 299946 : CGGTGGCGCGTTCGAACGATGCATCCAACACGTCGAGAGAGACNN---NNNNNNNNNN : 300001 129 : lnAlaLysGluGluArgLysIleMetPheArgAsnAlaLysIleAlaArgLeuPheTh : 147 ..!..!.!..!.|||! !||||||!!.||| !!!.!! !!:::!||| !.!.|| nkUnkSerAsnHisArgThrIleMetLeuArgTyrValThrMetSerArgAsnLeuTh 300002 : NNNNTTCGAATCATCGTACGATCATGTTGAGATACGTGACTATGAGCAGAAATCTGAC : 300058 148 : rIleIleCysValSerPheMetTyrCysGlyGlyIlePheTyrSerIlePheLeuPro : 166 |! !:!:|||!.! !|||:!:|||...||||||!!:! ||| !! ! :!!! ! rThrValCysAlaValPheLeuTyrAlaGlyGlyMetSerTyrHisThrValMetGln 300059 : GACCGTGTGCGCCGTGTTTCTTTACGCAGGTGGTATGTCGTATCACACGGTGATGCAG : 300115 167 : LeuIleThrAlaLysSerLeuThr{As} >>>> Target Intron 1 >>>> { : 175 !!!:!!:!! ! ! !!! !!:!{.!} 39 bp { PheLeuSerLysAspArgSerSer{Gl}++ +-{ 300116 : TTCTTATCGAAGGACAGAAGCAGC{GA}gt.........................aa{ : 300183 176 : n}GlyAsnAsnLeuThrIleArgIleLeuProTyrArgCysAsnPheIleIlePheAs : 194 .} !!.!.|||! !||| !!:! ||| !!|||! ! !! !! ! .!!.!!|| u}ArgGluAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAs 300184 : A}AGGGAGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGA : 300238 195 : pProTyrArgArgProIlePheAspIleValTyrValValHisCysPheCysSerVal : 213 | !! ! ! !!!!|||! !!:!!!:||||||::: |||||||||...:!!:!! pThrGlnThrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMet 300239 : TACACAAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATG : 300295 214 : IleMetTyrSerIleThrThrGlyIleCysSerLeuAlaAlaLysPheValMetHisA : 233 |||||||||!:!:!:||||||!.! ! !||||||||||||! !||||||! ||| IleMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisI 300296 : ATCATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATA : 300355 234 : laCysGlyGlnCysGluIleValMetSerLeuLeuGluAsnLeuIleAspAspAspLy : 252 !||||||||| !:!!||| !|||:!! !||||||:!!|||:!:!!: leCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrGl 300356 : TCTGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGGG : 300412 253 : sGlnCysSerAspIleValGluSerLysLeuAlaThrIleIleValGlnHisLeuHis : 271 !:!! !.!||| !! ! ..! |||!.!..!|||:!! !.!.|||:!! ! yGlu---LysAspAspGlyProAspProLeuValValIleValArgAspHisValLys 300413 : AGAG---AAGGACGACGGTCCTGATCCTTTGGTCGTTATCGTTCGAGATCACGTGAAG : 300466 272 : ValIle{Ar} >>>> Target Intron 2 >>>> {g}PheValThrArgValG : 280 |||:!!{||} 1110 bp {|} ! ! ! ! !!. ValLeu{Ar}++ ++{g}AspProCysSerPheA 300467 : GTTTTA{AG}gt.........................ag{A}GACCCGTGTTCCTTCC : 301603 281 : luAspLeuLeuAsnGluValCysLeuValGluPheLeuGlyCysThrMetAsnMetCy : 299 .. ! ! ! ! !.!.:!!||| ||| ... |||:!:||| rg***ProThrPheHisLeuCysAlaValIleLysPheGluSerThrLeuAsnAlaLy 301604 : GTTAGCCAACTTTTCATCTCTGCgctgtaattaaatttgaatctACTTTAAATGCAAA : 301660 300 : sLeuValGlyTyrTyrIleIleThrGlyPheGluSerAlaAspThrValArgPheIle : 318 !!!:!! !! ! !.!! !! !!:::!!!:!::!||||||:!! !.!.:!: sPheLeuArgValIle***Phe***GluTrpGlnAsnSerAspThrIleAlaMetLeu 301661 : GTTTTTACGAGTAATTTGATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTTG : 301717 319 : ThrPheThrLeuLeuPheIleSerPheThrPheAsnIlePheValPheCysTyrIleG : 338 |||||| ! !|||!!.! |||||||||||||||||||||:!!||||||||||||| ThrPhePheThrLeuLeuThrSerPheThrPheAsnIlePheIlePheCysTyrIleG 301718 : ACATTTTTCACTCTGTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCG : 301777 339 : lyGlnIleLeuThrAsnHis >>>> Target Intron 3 >>>> CysHisGln : 347 ||:!!||||||:!!.!.!!. 80 bp ||| !||| lyGluIleLeuSerGluGln++ ++CysSerGln 301778 : GCGAGATTCTTTCCGAACAGgt.........................agTGTAGCCAA : 301884 348 : IleGlyGluAlaSerTyrMetIleAspTrpTyrArgPheProGlyThrGlnAlaArgP : 367 ||||||..!||||||||| !||||||||||||!.!!!.|||!.!! !::!||| ! IleGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrA 301885 : ATTGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACG : 301944 368 : heLeuIleLeuLeuIleGlyValAlaAsnArgProIleArgLeuThrAlaGlyLysMe : 386 !||||||||||||! !! !:!!:!!.!. !||| !:!|||||||||||||||!! spLeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGlyLysIl 301945 : ATCTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAAT : 302001 387 : tValGlnPheSerPheProCysPheCysAsnVal : 397 ::!!.!.!!.|||!!. ! ||| !!::!||| eIleAspLeuSerLeuAsnThrPheSerSerVal 302002 : AATCGACTTATCCTTGAATACATTCAGCTCTGTA : 302036 vulgar: gi|528747940|gb|AGS43065.1| 13 397 . KQ414889.1 299656 302036 + 506 M 28 84 G 0 3 M 82 246 F 0 2 G 1 0 M 50 150 S 0 2 5 0 2 I 0 35 3 0 2 S 1 1 M 78 234 G 1 0 M 19 57 S 0 2 5 0 2 I 0 1106 3 0 2 S 1 1 M 70 210 5 0 2 I 0 76 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299657 302036 506 + . gene_id 6 ; sequence gi|528747940|gb|AGS43065.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 299657 300143 . + . KQ414889.1 exonerate:protein2genome:local exon 299657 300143 . + . insertions 3 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local splice5 300144 300145 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300144 300182 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300181 300182 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 300183 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300183 300476 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 301586 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301585 301586 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301587 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301587 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302036 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302036 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 299657 302036 506 + . alignment_id 6 ; Query gi|528747940|gb|AGS43065.1| ; Align 299657 14 84 ; Align 299744 42 246 ; Align 299992 125 150 ; Align 300184 176 234 ; Align 300418 255 57 ; Align 301588 275 210 ; Align 301878 345 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747940|gb|AGS43065.1| odorant receptor Or3f [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 455 Query range: 17 -> 307 Target range: 274362 -> 275309 18 : AsnPheAspSerAspValGluTyrAlaIleLysLeuAsnArgTrpLeuLeuLysProP : 37 |||||||||||| ! !!!:|||::!:!::!!||||||||||||!!!|||||||||. AsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 274363 : AATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTA : 274420 38 : heGlyIleTrpProLeuAsnSerSerSerThrLysPheAspArgGlyIleSerValIl : 56 !.||| ||||||||| !||| !!!!!|||||||||!!:||| !:!!||| !:: leGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLeuSerHisLe 274421 : TAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCt : 274477 57 : eSerSerPheIleCysCysLeuLeuLeuPhePheValMetIleProSerPheValVal : 75 : |||:::||| !! !!!!:!!.!!! !..!:!:|||||||||.!. !! ! uLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIlePheHis 274478 : tttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCAC : 274534 76 : MetPheValSerGluLysAspPheLysGlyArgLeuGluIleValGlyProThrSerP : 95 !!:.!.:!! !!!::!!..!.!! ! !!:!|||:!!:!::!!|||||| !.!! IleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyH 274535 : ATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTC : 274594 96 : heIleIleMetValValLeuLysTyrPhePheLeuIleThrArgGlyAspThrLeuLy : 114 ! .!!!!:! !! !:!!!!.||| ! |||:!: !|||.!! ! !:!!:: isTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleAr 274595 : ACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACG : 274651 115 : sMetCysIleAspThrIleLeuGlyAspTrpSerAsnValGlnAlaLysGluGluArg : 133 : |||:!:!!: !!!:! ! !||||||!!!! !||| ! !|||!!:!:! gGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAspGln 274652 : CGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAA : 274708 134 : LysIleMetPheArgAsnAlaLysIleAlaArgLeuPheThrIleIleCysValSerP : 153 :!!:!:|||!!.!:!||||||||||||!.!|||! ! !!.!!|||.!!|||!.!:!!| GlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaP 274709 : CAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGT : 274768 154 : heMetTyrCysGlyGlyIlePheTyrSerIlePheLeuProLeuIleThrAlaLysSe : 172 ||||| ! ||||||! !:!!! !|||!!!:!:.!. ! !!!!!! !! ! !! heMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGlnThrVa 274769 : TCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGT : 274825 173 : rLeuThrAsnGlyAsnAsnLeuThrIleArgIleLeuProTyrArgCysAsnPheIle : 191 !! !..!.....!.!.!.! !|||:!:!.!!!:||||||! !!:!..! !! ! lGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLysLys 274826 : TCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAG : 274882 192 : IlePheAspProTyrArgArgProIlePheAspIleValTyrValValHisCysPheC : 211 ||| !!! ! !!! !!!!|||! !!!:|||||| !!.! !!!.! ! ! ! IleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnPheValS 274883 : ATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGT : 274942 212 : ysSerValIleMetTyrSerIleThrThrGlyIleCysSerLeuAlaAlaLysPheVa : 230 .!! !!|||:!! !!|||! !.!!..!||| !! !|||||||||||| !|||!. erGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAl 274943 : CGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGC : 274999 231 : lMetHisAlaCysGlyGlnCysGluIleValMetSerLeuLeuGluAsnLeuIleAsp : 249 ! ||||||! !||||||! ...:!::!!|||! !! !:!! .!.!!!:!::!! aAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheValAsn 275000 : GGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAAT : 275056 250 : AspAspLys<->GlnCysSerAspIleValGluSerLysLeuAlaThrIleIleValG : 268 !!..!!:! ||| ...:::::: |||:!!:!!!.!..!:!!:!!! !! HisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValValValGluH 275057 : CATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAAC : 275116 269 : lnHisLeuHisValIle{Ar} >>>> Target Intron 1 >>>> {g}PheVa : 276 !.||||||...|||:!!{!!} 74 bp {!}|||:! isHisLeuArgValLeu{Se}++ ++{r}PheIl 275117 : ATCATCTGAGGGTACTC{AG}gt.........................ag{T}TTCAT : 275214 277 : lThrArgValGluAspLeuLeuAsnGluValCysLeuValGluPheLeuGlyCysThr : 295 !.!!|||:!!||||||:!!:!!|||..!:!!|||!!!:!!|||!!.!!! !|||||| eAlaArgIleGluAspValMetAsnArgIleCysPheMetGluLeuPheLysCysThr 275215 : AGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAATTGTTCAAGTGTACT : 275271 296 : MetAsnMetCysLeuValGlyTyrTyrIleIleThr : 307 :!!:!!||||||:!!:!!||||||||||||:!!||| LeuAspMetCysMetLeuGlyTyrTyrIleLeuThr 275272 : CTGGATATGTGCATGCTTGGCTATTACATTCTCACG : 275309 vulgar: gi|528747940|gb|AGS43065.1| 17 307 . KQ414889.1 274362 275309 + 455 M 235 705 G 0 3 M 21 63 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274363 275309 455 + . gene_id 7 ; sequence gi|528747940|gb|AGS43065.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274363 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274363 275135 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275309 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275309 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274363 275309 455 + . alignment_id 7 ; Query gi|528747940|gb|AGS43065.1| ; Align 274363 18 705 ; Align 275071 253 63 ; Align 275211 275 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747940|gb|AGS43065.1| odorant receptor Or3f [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 442 Query range: 17 -> 276 Target range: 221357 -> 222134 18 : AsnPheAspSerAspValGluTyrAlaIleLysLeuAsnArgTrpLeuLeuLysProP : 37 :!!!:! ! !!!:!!|||:!!! ::!:!::!!|||!:!||||||:!!|||||||||. AspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProI 221358 : GATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGA : 221415 38 : heGlyIleTrpProLeuAsnSerSerSerThrLysPheAspArgGlyIleSerValIl : 56 !!|||:!!|||||| !::::!!!:!! !:!!! ! ! !!:||| !:!!! ! !:! leGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLe 221416 : TCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 57 : eSerSerPheIleCysCysLeuLeuLeuPhePheValMetIleProSerPheValVal : 75 :! !!:! !!:!!|||! ! !|||:!! |||:!!:!!:!!|||!!! !:!! ! uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 76 : MetPheValSerGluLysAspPheLysGlyArgLeuGluIleValGlyProThrSerP : 95 :!!.!!:!!..!! !:!!||| !! ! ..!|||:!!:!!:!::!!|||||| !|||| ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 96 : heIleIleMetValValLeuLysTyrPhePheLeuIleThrArgGlyAspThrLeuLy : 114 || !:!:|||!.! !!||||||||| !.!.|||||| ! !! !:!! !:!!:: heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 115 : sMetCysIleAspThrIleLeuGlyAspTrpSerAsnValGlnAlaLysGluGluArg : 133 : !||||||!!: !||| ! !!||||||!.!|||:!! !...:!!!!:!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 134 : LysIleMetPheArgAsnAlaLysIleAlaArgLeuPheThrIleIleCysValSerP : 153 ! ||||||.!...!||||||! .!!!.!|||! !!!.! !!!:||||||..!! !| AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 154 : heMetTyrCysGlyGlyIlePheTyrSerIlePheLeuProLeuIleThrAlaLysSe : 172 |||||||| !!||| :::|||||| ||| !:!!|||!!!! !..!!.!|||! heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 173 : rLeuThrAsnGlyAsnAsnLeuThrIleArgIleLeuProTyrArgCysAsnPheIle : 191 !! !.!!.!.! ! |||:::|||... !:!! !!:!! !! !::: .!! eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 192 : IlePheAspProTyrArgArgProIlePheAspIleValTyrValValHisCysPheC : 211 ||| !!||| !! !!!!|||:!! !!!:|||:!!!:! !:!!!!. !.!.. IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 212 : ysSerValIleMetTyrSerIleThrThrGlyIleCysSerLeuAlaAlaLysPheVa : 230 ...!!!.!:!:|||:!!|||||||||:!!!.! !|||||||||!.!|||! !|||!. laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 231 : lMetHisAlaCysGlyGlnCysGluIleValMetSerLeuLeuGluAsnLeuIleAsp : 249 !:!!||||||||||||||| :!!:!::!!||||||! !|||:!!:!!||||||:!! aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 250 : AspAspLysGlnCysSerAspIleValGluSerLysLeuAlaThrIleIleValGlnH : 269 ! ! !.!. !!!:!!! !|||!!:!!!!:!:!!|||! !|||:!: !|||| GlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnH 222052 : GGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAAC : 222111 270 : isLeuHisValIleArgPheVal : 276 ||:!!!..:!!:!:!:!!:!||| isValArgIleLeuGlnTyrVal 222112 : ACGTTCGAATATTGCAGTATGTA : 222134 vulgar: gi|528747940|gb|AGS43065.1| 17 276 . KQ414889.1 221357 222134 + 442 M 259 777 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221358 222134 442 + . gene_id 8 ; sequence gi|528747940|gb|AGS43065.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221358 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221358 222134 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221358 222134 442 + . alignment_id 8 ; Query gi|528747940|gb|AGS43065.1| ; Align 221358 18 777 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747940|gb|AGS43065.1| odorant receptor Or3f [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 435 Query range: 16 -> 342 Target range: 262825 -> 264642 17 : LysAsnPheAspSerAspValGluTyrAlaIleLysLeuAsnArgTrpLeuLeuLysP : 36 :!!!:!|||! !||| ! !!!:|||::!:!::!!:!!||||||||||||||||||| GluSerPheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysP 262826 : GAAAGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAAC : 262883 37 : roPheGlyIleTrpProLeuAsnSerSerSerThrLysPheAspArgGlyIleSerVa : 55 ||.!!||| !|||||||||::!:!!|||! !:!!!:!.!.!!:||| !|||!!! ! roIleGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPh 262884 : CGATCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTT : 262940 56 : lIleSerSerPheIleCysCysLeuLeuLeuPhePheValMetIleProSerPheVal : 74 !:!!! !! ! !!:!!|||! !! !|||:!!.!.! !..!:!:|||||||||.!.:!! eLeuLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeu 262941 : TCTCTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTT : 262997 75 : ValMetPheValSerGluLysAspPheLysGlyArgLeuGluIleValGlyProThrS : 94 !!!: !!:!!..!! :!!:!!||| ! !!:!|||:!!:!!:!!|||||| !. HisIleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuG 262998 : CATATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCG : 263057 95 : erPheIleIleMetValValLeuLysTyrPhePheLeuIleThrArgGlyAspThrLe : 113 !! .!!:!:! !:!!:!!!!.||| !!::|||:!: !!.!.!! ! !:! lyGlnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIl 263058 : GTCAGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATAT : 263114 114 : uLysMetCysIleAspThrIleLeuGlyAspTrpSerAsnValGlnAlaLysGluGlu : 132 !:!! |||:!:.!. !:!:! !! !||||||!!!! !||| ! !|||!!: eGlnGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAsp 263115 : ACAAGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGAT : 263171 133 : ArgLysIleMetPheArgAsnAlaLysIleAlaArgLeuPheThrIleIleCysValS : 152 !:!:::||||||.!.!:!||||||||| !!.!|||! ! ! .!! ! !|||!.!! GlnArgIleMetLeuLysAsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaI 263172 : CAACGTATCATGCTGAAGAACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGA : 263231 153 : erPheMetTyrCysGlyGlyIlePheTyrSerIlePheLeuProLeuIleThrAlaLy : 171 !|||||| ! .!! !!!:! ! ! !!!:!! !! ! !!!!!! !||| ! lePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnVa 263232 : TCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGT : 263288 172 : sSerLeuThrAsnGlyAsnAsnLeuThrIleArgIleLeuProTyrArgCysAsnPhe : 190 !! ! ! !..!..!.!.!.! !! !:!!|||!!:||||||! !! ! !! lIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLys 263289 : GATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAA : 263345 191 : IleIlePheAspProTyrArgArgProIlePheAspIleValTyrValValHisCysP : 210 |||.!! ! !!! !!.!|||! !!!:||| !! !!.!..!!!.! !. GluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheL 263346 : GAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTC : 263405 211 : heCysSerValIleMetTyrSerIleThrThrGlyIleCysSerLeuAlaAlaLysPh : 229 !.! .!! !!|||:!: !:!!! !|||..!||| !! !.!!:!!.!!||| !|| euSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPh 263406 : TGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTT : 263462 230 : eValMetHisAlaCysGlyGlnCysGluIleValMetSerLeuLeuGluAsnLeuIle : 248 |!.! |||||||||||||||! .!.:!::!!||||||! !:!! !.!.!!!:!: eAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheVal 263463 : CGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTG : 263519 249 : AspAspAspLys<->GlnCysSerAspIleValGluSerLysLeuAlaThrIleIleV : 267 :!!.!...!!:! :!! !!.!:!!:!! ! !!!:!!:!!!.!..!|||:!!! AsnGlnSerArgAspGluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValG 263520 : AACCAGTCCAGGGATGAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTG : 263579 268 : alGlnHisLeuHisValIle{Ar} >>>> Target Intron 1 >>>> {g}Ph : 275 !!!.||||||...|||:!:{!!} 72 bp {!}|| luHisHisLeuArgValLeu{Se}++ ++{r}Ph 263580 : AACATCATCTGAGAGTTCTG{AG}gt.........................ag{T}TT : 263675 276 : eValThrArgValGluAspLeuLeuAsnGluValCysLeuValGluPheLeuGlyCys : 294 |:!! !|||:!!:!!:!!:!!:!!!:! !:!!|||!!!||||||!!.!!! !..! eIleAspArgIleLysAsnValMetSerThrIleCysPheValGluLeuPheLysAla 263676 : CATAGATCGTATTAAGAATGTGATGAGTACGATATGTTTCGTGGAGTTATTCAAGGCT : 263732 295 : ThrMetAsnMetCysLeuValGlyTyrTyrIleIleThr >>>> Target Intro : 308 |||:!!:!!!!:|||:!!:!!||||||||||||:!!||| 764 bp ThrLeuAspIleCysMetLeuGlyTyrTyrIleLeuThr++ 263733 : ACGCTGGATATATGCATGCTAGGTTACTACATACTTACGgt................. : 263776 309 : n 2 >>>> GlyPheGluSerAlaAspThrValArgPheIleThrPheThrLeuLeu : 323 ! !!::|||||| ||| ...... !|||!:! !:!!:!! ++GluTrpGluSerHisAspIleGlnAsnLeuThrThrTyrPheMetIle 263777 : ........agGAATGGGAAAGTCAtgatattcaaaatttgacTACATATTTCATGATA : 264583 324 : PheIleSerPheThrPheAsnIlePheValPheCysTyrIleGlyGlnIleLeuThr : 342 .!.||||||.!. ! !|||||||||:!!.!.||||||||||||:!!||||||||| LeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGlyGluIleLeuThr 264584 : CTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGGCGAGATATTGACT : 264642 vulgar: gi|528747940|gb|AGS43065.1| 16 342 . KQ414889.1 262825 264642 + 435 M 236 708 G 0 3 M 21 63 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 33 99 5 0 2 I 0 760 3 0 2 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262826 264642 435 + . gene_id 9 ; sequence gi|528747940|gb|AGS43065.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262826 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262826 263601 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 263673 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263672 263673 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 263674 263773 . + . KQ414889.1 exonerate:protein2genome:local exon 263674 263773 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263774 263775 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263774 264537 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 264536 264537 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 264538 264642 . + . KQ414889.1 exonerate:protein2genome:local exon 264538 264642 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262826 264642 435 + . alignment_id 9 ; Query gi|528747940|gb|AGS43065.1| ; Align 262826 17 708 ; Align 263537 253 63 ; Align 263675 275 99 ; Align 264538 308 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747940|gb|AGS43065.1| odorant receptor Or3f [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 432 Query range: 10 -> 276 Target range: 212830 -> 213628 11 : LysThrAlaValGlnAsnLysAsnPheAspSerAspValGluTyrAlaIleLysLeuA : 30 ||| ! !|||:!!:!! !.!!:!!!:!.! |||... :::||| !! !| LysLeuGlnValGluAspCysThrTyrGluLysArgValAsnLeuSerIleProTrpA 212831 : AAATTGCAGGTCGAAGACTGTACCTACGAGAAACGtgtaaatttaagtatacCGTGGA : 212888 31 : snArgTrpLeuLeuLysProPheGlyIleTrpProLeuAsnSerSerSerThrLysPh : 49 |||||||||||||||||||| |||:!:|||||| !!!.|||! ! !:!! !.! snArgTrpLeuLeuLysProThrGlyLeuTrpProAspLysSerTyrValSerProIl 212889 : ATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGAT : 212945 50 : eAspArgGlyIleSerValIleSerSerPheIleCysCysLeuLeuLeuPhePheVal : 68 !!!:!:!..!|||:!! !:!: !!:! !:!!|||! ! !|||:!! !!:!:!! eGluLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLeu 212946 : CGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTT : 213002 69 : MetIleProSerPheValValMetPheValSerGluLysAspPheLysGlyArgLeuG : 88 :!:||||||!!! !:!! !:!!|||:!!..!! !::::::... ...:!!| ValIleProCysSerLeuTyrValPheLeuAspValGluAsnIlePheLysGluIleG 213003 : GTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaagagaTCG : 213062 89 : luIleValGlyProThrSerPheIleIleMetValValLeuLysTyrPhePheLeuIl : 107 ||:!: !!||| ! !:!!||| !:!: !.!:!!! !|||||| !! ||||| luLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIl 213063 : AATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGAT : 213119 108 : eThrArgGlyAspThrLeuLysMetCysIleAspThrIleLeuGlyAspTrpSerAsn : 126 | !!.!|||||| !:!!:::! !|||:!!!!: !!!: ! !||||||!.!||| eLeuHisGlyAspAspIleArgThrCysValGluHisMetLysTyrAspTrpLysAsn 213120 : ACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAAT : 213176 127 : ValGlnAlaLysGluGluArgLysIleMetPheArgAsnAlaLysIleAlaArgLeuP : 146 :!! ! !:!!|||!!:!:!:!!|||||| !||||||!...!!!.!!:! !. IleThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgI 213177 : ATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGA : 213236 147 : heThrIleIleCysValSerPheMetTyrCysGlyGlyIlePheTyrSerIlePheLe : 165 !...!! !||||||!.!! !||||||||| ||| !! ||||||! !:!! !!:! leValThrIleCysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuValVa 213237 : TAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGT : 213293 166 : uProLeuIleThrAlaLysSerLeuThrAsnGlyAsnAsnLeuThrIleArgIleLeu : 184 !|||:!!! !.!!! !|||! !:!!.!!.!.! ! !|||:!!|||.!!||| !:!! lProIleSerAlaAspLysMetValAlaGluAspLeuAsnValThrPheArgGlnMet 213294 : ACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATG : 213350 185 : ProTyrArgCysAsnPheIleIlePheAspProTyrArgArgProIlePheAspIleV : 204 ! !! ! !::: .!!||| !!||| ! !!!!|||:!: !!!:||| ValValProValSerArgPheIleValAspValArgTyrSerProValAsnGluIleP 213351 : GTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATAT : 213410 205 : alTyrValValHisCysPheCysSerValIleMetTyrSerIleThrThrGlyIleCy : 223 !!!:!:!!:!!!!. !.!...!.!!|||:!:!!::!!:!!|||.!!..!! ! !|| hePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAlaCy 213411 : TCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTG : 213467 224 : sSerLeuAlaAlaLysPheValMetHisAlaCysGlyGlnCysGluIleValMetSer : 242 ||||||||||||| !|||!.!:!:||||||||||||||| ! |||:!!|||||| sSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSer 213468 : TAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGC : 213524 243 : LeuLeuGluAsnLeuIleAspAspAspLysGlnCysSerAspIleValGluSerLysL : 262 ! !||||||:!!|||||||||! ! :!!.!. ||| ! ! !|||!!:..!!:!: TrpLeuGluHisLeuIleAspGlyArgGluAspMetSerLysAsnValAspAspArgI 213525 : TGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGCAAGAATGTGGACGACAGAA : 213584 263 : euAlaThrIleIleValGlnHisLeuHisValIleArgPheVal : 276 !!|||..!|||:!: !||||||:!!!..:!!:!:!:!!::||| leAlaValIleValAsnGlnHisValArgIleLeuLysTrpVal 213585 : TCGCGGTCATCGTGAACCAGCATGTGCGGATACTGAAGTGGGTG : 213628 vulgar: gi|528747940|gb|AGS43065.1| 10 276 . KQ414889.1 212830 213628 + 432 M 266 798 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212831 213628 432 + . gene_id 10 ; sequence gi|528747940|gb|AGS43065.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212831 213628 . + . KQ414889.1 exonerate:protein2genome:local exon 212831 213628 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212831 213628 432 + . alignment_id 10 ; Query gi|528747940|gb|AGS43065.1| ; Align 212831 11 798 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747940|gb|AGS43065.1| odorant receptor Or3f [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 428 Query range: 19 -> 397 Target range: 204221 -> 206401 20 : AspSerAspValGluTyrAlaIleLysLeuAsnArgTrpLeuLeuLysProPheGlyI : 39 !!:..!|||:!!..!||||||! !:::!!! !:! !:!!||| ! ! !!||| GluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyA 204222 : GAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTG : 204279 40 : leTrpProLeuAsnSerSerSerThrLysPheAspArgGlyIleSerValIleSerSe : 58 ||||||:!! !!:!|||:!! !||| ||| !:!! !! !|||..! laTrpProIleProValAsnSerSerProPheThrArgLeuValArgArgIleGluHi 204280 : CGTGGCCGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACA : 204336 59 : rPheIleCysCysLeuLeuLeuPhePheValMetIleProSerPheValValMetPhe : 77 ! ! :!! ! ...|||...|||...:!!!!::!!|||.!!.!!:!! !:!!||| sValValThrTyrPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPhe 204337 : CGTAGTCACCtatttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTC : 204393 78 : ValSerGluLysAspPheLysGlyArgLeuGluIleValGlyProThrSerPheIleI : 97 :!!!.!||||||:!! !||| !||||||:!!|||:!!||||||! ! ! ! !! LeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysS 204394 : CTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCA : 204453 98 : leMetValValLeuLysTyrPhePheLeuIleThrArgGlyAspThrLeuLysMetCy : 116 !!!: ! !!!!!||||||! ! !!:!!:!! !||| !|||! !:!!:!!! ! ! erIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSe 204454 : GCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAG : 204510 117 : sIleAspThrIleLeuGlyAspTrpSerAsnValGlnAlaLysGluGluArgLysIle : 135 !:!::!!|||||| ! !!|||||| :!!:!!|||! !!!:|||!.!::!:!: rLeuAsnThrIleArgArgAspTrp------IleGluAlaThrAspGluAsnArgLeu 204511 : TTTGAACACCATCAGACGCGACTGG------ATAGAGGCTACGGATGAAAATCGGTTG : 204561 136 : MetPheArgAsn<->AlaLysIleAlaArgLeuPheThrIleIleCysValSerPheM : 154 !!:||||||::: |||||||||!.!||| ! ! !:!:|||...!.!:!! !| IlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrM 204562 : ATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTA : 204621 155 : etTyrCysGlyGlyIlePheTyrSerIlePheLeuProLeuIleThrAlaLysSerLe : 173 ||||| !!||||||:!:! !|||!!!! .!!|||||||||:!:! !!.! !!!:! etTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGly---ThrIl 204622 : TGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGA---ACGAT : 204675 174 : uThrAsnGlyAsnAsnLeuThrIleArgIleLeuProTyrArgCysAsnPheIleIle : 192 !..!!.. !:!!|||:!!||||||||| ||||||! !! ! ! |||:::... eValThrProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhe 204676 : CGTAACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttc : 204732 193 : PheAspProTyrArgArgProIlePheAspIleValTyrValValHisCysPheCysS : 212 |||::: ! ! ||| !|||! !!:!!!:||||||!:!:!!:!!!!. !.!...!. PheAsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaG 204733 : tttaacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTG : 204792 213 : erValIleMetTyrSerIleThrThrGlyIleCysSerLeuAlaAlaLysPheValMe : 231 !! !!:!!! |||:!!:!!! !!:!|||! !|||.!!:!!..!||| !||||||:! lyPheValThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLe 204793 : GTTTTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCT : 204849 232 : tHisAlaCysGlyGlnCysGluIleValMetSerLeuLeuGluAsnLeuIleAspAsp : 250 :|||||||||.!!..! ..!|||:!!:!!!:! !:!!.!. |||:!:||| ! uHisAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLys 204850 : CCACGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAG : 204906 251 : AspLysGlnCysSerAspIleValGluSerLysLeuAlaThrIleIleValGlnHisL : 270 ! ! ..! !..! :!!|||.!.!!!|||:!!||| !|||:!!! ! ! !!. AlaAspMetThrGluThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnT 204907 : GCGGACATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGA : 204966 271 : euHisValIle{Ar} >>>> Target Intron 1 >>>> {g}PheValThrAr : 278 ! ! :!!! {||} 1047 bp {|} !..! !|| hrLysIleLys{Ar}++ ++{g}AsnThrGlyAr 204967 : CGAAGATAAAG{AG}gt.........................ag{A}AATACAGGACG : 206037 279 : gValGluAspLeuLeuAsnGluValCysLeuValGluPheLeuGlyCysThrMetAsn : 297 | ! ! ! !.....!..! :!! !:!! ||| !|||||| ..! gSerCysPheArgAsnGlyArgThrIleIleGlnGlnArgLeu***CysThrSerArg 206038 : ATCGTGTTTTAGGAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGT : 206094 298 : MetCysLeuValGlyTyrTyrIleIleThrGlyPheGluSerAlaAspThrValArgP : 317 ! ! !:!!! !:!!! ! .!! ! !!:!! !!!:!!! !!:! !! !! CysArgTyrLeuValHisSerAlaPheLeuTyrTyrAlaThrSerGlySerPheLeuS 206095 : TGCAGATATCTTGTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTAT : 206154 318 : heIleThrPheThrLeuLeuPheIleSerPheThrPheAsnIlePheValPheCysTy : 336 |||! !! !..!:!! !!:! !!!! !|||!:: :::::::::||| erIleLysCysValIleThrTyrGln***SerThrTrpIleLeuTrpIlePheLeuTh 206155 : CGATCAAGTGCGTGATTACGTATCAATGAAGTACGTGGattctttggatttttttaaC : 206211 337 : rIleGlyGlnIleLeuThrAsn-----HisCysHisGlnIleGlyGluAlaSerTyrM : 354 !:!! !::!! !:!!|||! !#####!!. !||| :!:||| !.!!|||! !! rLeuThrArgSerIleThrIle#####GlnAsnHisValValGlyLeuThrSerCysT 206212 : TCTTACTAGAAGTATTACCATTTTTAACAGAACCACGTCGTGGGATTGACATCTTGCA : 206270 355 : etIleAspTrpTyrArgPheProGlyThrGlnAlaArgPheLeuIleLeuLeuIleGl : 373 !:!::!!|||||||||.!!|||..!! !!!.||||||! !:!!||||||:!!|||!. hrValAsnTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAl 206271 : CGGTGAATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGC : 206327 374 : yValAlaAsnArgProIleArgLeuThrAlaGlyLysMetValGlnPheSerPhePro : 392 !:!!:!!||| !||||||!:!|||||||||||||||||| !!:!!.!.|||!!. !! aMetSerAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAla 206328 : CATGTCTAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCT : 206384 393 : CysPheCysAsnVal : 397 !!||| !:!!||| SerPheThrAspVal 206385 : AGTTTCACCGATGTA : 206401 vulgar: gi|528747940|gb|AGS43065.1| 19 397 . KQ414889.1 204221 206401 + 428 M 105 315 G 2 0 M 13 39 G 0 3 M 31 93 G 1 0 M 102 306 S 0 2 5 0 2 I 0 1043 3 0 2 S 1 1 M 69 207 F 0 5 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204222 206401 428 + . gene_id 11 ; sequence gi|528747940|gb|AGS43065.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 204222 204979 . + . KQ414889.1 exonerate:protein2genome:local exon 204222 204979 . + . insertions 3 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 204980 204981 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 204980 206026 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206025 206026 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206027 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206027 206401 . + . insertions 0 ; deletions 0 ; frameshifts 5 KQ414889.1 exonerate:protein2genome:local similarity 204222 206401 428 + . alignment_id 11 ; Query gi|528747940|gb|AGS43065.1| ; Align 204222 20 315 ; Align 204537 127 39 ; Align 204579 140 93 ; Align 204672 172 306 ; Align 206028 275 207 ; Align 206240 344 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747940|gb|AGS43065.1| odorant receptor Or3f [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 404 Query range: 12 -> 348 Target range: 256616 -> 258387 13 : AlaValGlnAsnLysAsnPheAspSerAspValGluTyrAlaIleLysLeuAsnArgT : 32 |||||| !!!.! !|||||| ! ||| !! !!!:|||::!:!!:!!|||||||||| AlaValValLysThrAsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgT 256617 : GCCGTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGAT : 256674 33 : rpLeuLeuLysProPheGlyIleTrpProLeuAsnSerSerSerThrLysPheAspAr : 51 ||!!!|||||||||.!.||| !||||||! !:::||||||!!!|||! .!!!!:|| rpPheLeuLysProIleGlyAlaTrpProProSerSerSerThrThrThrLeuGluAr 256675 : GGTTCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCG : 256731 52 : gGlyIleSerValIleSerSerPheIleCysCysLeuLeuLeuPhePheValMetIle : 70 |..!:!!|||:!!:!!! !!:!.!!:!!|||! ! !! !:!!!!.|||..!:!!||| gAsnValSerIleValLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIle 256732 : AAACGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATA : 256788 71 : ProSerPheValValMetPheValSerGluLysAspPheLysGlyArgLeuGluIleV : 90 |||!!!!!.:!! !:!:|||:!!..!!!: ! ..!||| ! ::::::::: ProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrMetLysValLysAsnP 256789 : CCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatt : 256848 91 : alGlyProThrSerPheIleIleMetValValLeuLysTyrPhePheLeuIleThrAr : 109 ||||||! !||| ! |||!!: ! ! !!!.||| !!.|||:!: !!: heGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGl 256849 : tcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACA : 256905 110 : gGlyAspThrLeuLysMetCysIleAspThrIleLeuGlyAspTrpSerAsnValGln : 128 !||| ! !:!!::: |||:!!!!: !||| ! !||||||!!!! |||::! nGlyLysAspIleArgTyrCysValGluHisIleGluThrAspTrpArgMetValArg 256906 : AGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGG : 256962 129 : AlaLysGluGluArgLysIleMetPheArgAsnAlaLysIleAlaArgLeuPheThrI : 148 !:!!:!!!!:!:!:!!:!:|||.!.!:!||||||!:!.!!!.!|||! ! ! .!!! ArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaT 256963 : AGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCA : 257022 149 : leIleCysValSerPheMetTyrCysGlyGlyIlePheTyrSerIlePheLeuProLe : 167 !.!!|||!.!:!!.!!||| ! !!||| ... ::: :::! ! ! !!|| hrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePheValSerSerAlaLe 257023 : CATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCT : 257079 168 : uIleThrAlaLysSerLeuThrAsnGlyAsnAsnLeuThrIleArgIleLeuProTyr : 186 |! !|||! !! !! !! !..!.....!.!.!.. !! !:!:|||:!:|||||| ! uAsnThrGluIleIleHisValGlyAsnGluThrThrIleValArgValLeuProVal 257080 : GAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTT : 257136 187 : ArgCysAsnPheIleIlePheAspProTyrArgArgProIlePheAspIleValTyrV : 206 ! ! !! ! :!:!!.:!! ! !!!:!!!!|||! !!!:|||||| ! ThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrAsnGluIleValValP 257137 : ACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCT : 257196 207 : alValHisCysPheCysSerValIleMetTyrSerIleThrThrGlyIleCysSerLe : 225 !!:!!!!. !!::! |||:!!||| ! !!!!! !|||..!.!!|||! !||||| heMetGlnThrTrpSerSerIleIleAlaThrThrSerThrValSerIlePheSerLe 257197 : TTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCT : 257253 226 : uAlaAlaLysPheValMetHisAlaCysGlyGlnCysGluIleValMetSerLeuLeu : 244 ||||||| |||!.!! ||||||! !||||||! :!::!!||||||! !:!! uAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIle 257254 : CGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATA : 257310 245 : GluAsnLeuIleAspAspAspLysGlnCysSerAspIleValGluSerLysLeuAlaT : 264 !.!.!!!:!::!!!!:...!:!.!. ! ... !|||! ! ! ThrGluPheValAsnGluSerArgAsnArgGluLysThrPheProPheLysGlnIleG 257311 : ACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAG : 257370 265 : hrIleIleValGln<->HisLeuHisValIle{Ar} >>>> Target Intron 1 : 274 !:!:||||||:!! ||||||...|||:!:{||} 760 bp lyValIleValGluHisHisLeuArgValLeu{Ar}++ 257371 : GCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt.................... : 257407 275 : >>>> {g}PheValThrArgValGluAspLeuLeuAsnGluValCysLeuValGlu : 290 {|}! !|||! ! ! !.!. |||! !.!..!.! !! ! ! +-{g}CysValMetTyrArgAsnLeuLeuGlnGlnAsnGly***AsnArgThr 257408 : .....ac{G}TGCGTTATGTACCGAAACCTGTTGCAACAAAATGGTTAAAATCGTACC : 258211 291 : PheLeuGlyCysThrMetAsnMetCysLeuValGlyTyrTyrIleIleThrGlyPheG : 310 !:! !..!! ! !!!!::!!! ||| :::||| ... !!::. TyrAsnAsnPheProIleHisSerTyrSerValIlePheTyrTyrPheGlnGluTrpS 258212 : TACAATAATTTTCCTATACACAGctattctgttattttttattattttcaggaATGGT : 258271 311 : luSerAlaAspThrValArgPheIleThrPheThrLeuLeuPheIleSerPheThrPh : 329 ..!!! ||| ...... :::::! !:!!:!!.!!||||||...:::|| erThrGlnAspIleGlnAsnLeuSerSerTyrPheMetIleLeuIleSerLeuSerPh 258272 : CTACGCaagatattcaaaatttgagttcgtaCTTTATGATACTCATATcactttcttt : 258328 330 : eAsnIlePheValPheCysTyrIleGlyGlnIleLeuThrAsnHisCysHisGlnIle : 348 |||||||||||||...||||||||||||:!!|||||||||.!.!!. ! :::||| eAsnIlePheValIleCysTyrIleGlyGluIleLeuThrGluGlnValProGluIle 258329 : caatatttttgtaatatgttACATAGGTGAAATATTAACAGAACAGGTACCagagatt : 258385 vulgar: gi|528747940|gb|AGS43065.1| 12 348 . KQ414889.1 256616 258387 + 404 M 256 768 G 0 3 M 5 15 S 0 2 5 0 2 I 0 756 3 0 2 S 1 1 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256617 258387 404 + . gene_id 12 ; sequence gi|528747940|gb|AGS43065.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256617 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256617 257404 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 258164 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258163 258164 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 258165 258387 . + . KQ414889.1 exonerate:protein2genome:local exon 258165 258387 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256617 258387 404 + . alignment_id 12 ; Query gi|528747940|gb|AGS43065.1| ; Align 256617 13 768 ; Align 257388 269 15 ; Align 258166 275 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747940|gb|AGS43065.1| odorant receptor Or3f [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 373 Query range: 5 -> 307 Target range: 232402 -> 234623 6 : GluGluPheLysIleLysThrAlaValGlnAsnLysAsnPheAspSerAspValGluT : 25 |||! !.!!! !:!: ! :!!:!! !.!.!.. !||| ! !!||| !|||| GluValIleMetLeuAspSerSerArgAspThrLeuAsnAlaThrArgAspTyrGluT 232403 : GAGGTAATCATGCTGGACTCGTCCCGCGACACGTTGAACGCTACGCGAGACTACGAGT : 232460 26 : yrAlaIleLysLeuAsnArgTrpLeuLeuLysProPheGlyIleTrpProLeuAsnSe : 44 ||::!|||:!!:!!|||||||||!!!|||! !|||.!.||| !||||||! ! !!! yrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgValTh 232461 : ACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTGTTAC : 232517 45 : rSerSerThrLysPheAspArgGlyIleSerValIleSerSerPheIleCysCysLeu : 63 !..!!!!:!!!:! !.!.!:! !:!!:!! !:!:! !!!!.!!! !||| !! ! rGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHisSer 232518 : AGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCATTCT : 232574 64 : LeuLeuPhePheValMetIleProSerPheValValMetPheValSerGluLysAspP : 83 |||:!!.!!! ! !!!::!!|||!!!.!!:!! !!!!:.!. !!..!!!:! !..!. LeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThrSerL 232575 : CTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACGAGCC : 232634 84 : heLysGlyArgLeuGluIleValGlyProThrSerPheIleIleMetValValLeuLy : 102 !.:!!! !|||:!!:!! !:!!||||||! !||| !.!!:!:|||! !! !|||!! euGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluLeuAs 232635 : TAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAATTGAA : 232691 103 : sTyrPhePheLeuIleThrArgGlyAspThrLeuLysMetCysIleAspThrIleLeu : 121 .|||! !! !|||:!:.!!!:!!.!:!! !:!! |||:!:!!: !:!: ! nTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnValLys 232692 : TTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGTGAAA : 232748 122 : GlyAspTrpSerAsnValGlnAlaLysGluGluArgLysIleMetPheArgAsnAlaL : 141 !|||||| !!||||||:!! ! ! .!.||| ! :!:|||!!.!:!||||||| GlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsnAlaL 232749 : CAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAACGCGA : 232808 142 : ysIleAlaArgLeuPheThrIleIleCysValSerPheMetTyrCysGlyGlyIlePh : 160 ||:!!!.!|||! !.!..!! !|||..!!.!! !! !|||:!! !|||! ! !! ysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValGlySe 232809 : AACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCGGCTC : 232865 161 : eTyrSerIlePheLeuProLeuIleThrAlaLysSerLeuThrAsnGlyAsnAsnLeu : 179 ! !!..!||| !! ! !||| !! !::!! !! !! !..!.....!.!.!:!! ! rAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSerTyr 232866 : CGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAGTTAC : 232922 180 : ThrIleArgIleLeuProTyrArgCysAsnPheIleIlePheAspProTyrArgArgP : 199 :!!!!: ! ||||||! !! !! ! !! ! :!:.!.||| !! !!!!| SerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPheSerP 232923 : TCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTCAGTC : 232982 200 : roIlePheAspIleValTyrValValHisCysPheCysSerValIleMetTyrSerIl : 218 ||! !!!:|||:!!!:!|||:!!!!.|||.!!! !.!! !!|||:!! !!|||:! roThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnSerVa 232983 : CGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACTCCGT : 233039 219 : eThrThrGlyIleCysSerLeuAlaAlaLysPheValMetHisAlaCysGlyGlnCys : 237 !|||..!||| !|||.!!|||!.!||| .!.!.!|||||||||||||||||| lThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGlnLeu 233040 : TACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACAGCTG : 233096 238 : GluIleValMetSerLeuLeuGluAsnLeuIleAspAspAspLysGlnCysSerAspI : 257 .!.:!:||||||||| !|||!!::!!|||:!:|||! ! !||| ..! : AsnValValMetSerLysLeuAspAspLeuValAspAlaLysGlyGlnGluGluArgV 233097 : AACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAGGAGGAGAGAG : 233156 258 : leValGluSerLysLeuAlaThrIleIleValGlnHisLeuHisValIleArgPheVa : 276 !!!.!:!!!!!||||||!.! !|||:!:! !!!.||||||!.!..!:!!|||!:!:! alAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeuArgTyrLe 233157 : TCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTAAGGTATTT : 233213 277 : lThrArgValGluAspLeuLeuAsnGluValCysLeuValGlu >>>> Target I : 291 !:!! |||... ! !!!!|||! ! !! !! !!.!||| 1318 uSer---ValArgCysSerPheAsnValGlnTyrCysAlaGlu-+ 233214 : GTCT---GTGCGTTGTAGTTTCAATGTGCAATACTGTGCAGAGct............. : 233257 292 : ntron 1 >>>> PheLeuGlyCysThrMetAsnMetCysLeuValGlyTyrTyrIl : 305 bp !!.:!!|||||||||:!!|||||||||:!!:!!! !||||||:! ++LeuValGlyCysThrLeuAsnMetCysMetLeuGluTyrTyrLe 233258 : ............agTTGGTAGGATGCACGTTGAACATGTGCATGCTCGAGTATTATTT : 234615 306 : eIleThr : 307 !:!!||| uLeuThr 234616 : ACTCACG : 234623 vulgar: gi|528747940|gb|AGS43065.1| 5 307 . KQ414889.1 232402 234623 + 373 M 272 816 G 1 0 M 12 36 5 0 2 I 0 1314 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232403 234623 373 + . gene_id 13 ; sequence gi|528747940|gb|AGS43065.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232403 233254 . + . KQ414889.1 exonerate:protein2genome:local exon 232403 233254 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233255 233256 . + . intron_id 1 ; splice_site "CT" KQ414889.1 exonerate:protein2genome:local intron 233255 234572 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234571 234572 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234573 234623 . + . KQ414889.1 exonerate:protein2genome:local exon 234573 234623 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232403 234623 373 + . alignment_id 13 ; Query gi|528747940|gb|AGS43065.1| ; Align 232403 6 816 ; Align 233219 279 36 ; Align 234573 291 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747940|gb|AGS43065.1| odorant receptor Or3f [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 339 Query range: 10 -> 269 Target range: 259730 -> 260507 11 : LysThrAlaValGlnAsnLysAsnPheAspSerAspValGluTyrAlaIleLysLeuA : 30 |||:!!!.! !! !.!.! !!:!||| !||| !! !!!:|||::!:!!:!!!!!| LysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerLeuGlnPheA 259731 : AAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCCAATTTA : 259788 31 : snArgTrpLeuLeuLysProPheGlyIleTrpProLeuAsnSerSerSerThrLysPh : 49 ||||||||!!!|||||||||.!.||| !||||||! !:::||||||!!!|||!:!.! snArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerThrThrArgLe 259789 : ATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCACGACCAGACT : 259845 50 : eAspArgGlyIleSerValIleSerSerPheIleCysCysLeuLeuLeuPhePheVal : 68 !!!:!:! !|||||||||||| !! !|||||||||! ! ! !:!!.!. !!..! uGluLysIleIleSerValIleLeuIlePheIleCysTyrSerThrIleLeuValThr 259846 : CGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTACCATACTGGTCACC : 259902 69 : MetIleProSerPheValValMetPheValSerGluLysAspPheLysGlyArgLeuG : 88 :!!||||||!!! ! :!! !|||.!.:!!..!:!!:!!..!!!. ! !!:! !: LeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrMetLysThrL 259903 : CTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGA : 259962 89 : luIleValGlyProThrSerPheIleIleMetValValLeuLysTyrPhePheLeuIl : 107 !!:!::!!|||||| !!!! ! .!!:!:! ! !:!!!!.||| |||:! ysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrThrThrLeuLe 259963 : AGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTT : 260019 108 : eThrArgGlyAspThrLeuLysMetCysIleAspThrIleLeuGlyAspTrpSerAsn : 126 : !|||||| !:!! ! |||:!:!!: !:!: !..!||||||!!!! ! uLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAspTrpArgIle 260020 : GTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGAATT : 260076 127 : ValGlnAlaLysGluGluArgLysIleMetPheArgAsnAlaLysIleAlaArgLeuP : 146 :!! ! !:!!:!!!!:!:!!!.:!:|||!!.||| !!||||||.!!!.!|||! ! IleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgTyrV 260077 : ATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGATACG : 260136 147 : heThrIleIleCysValSerPheMetTyrCysGlyGlyIlePheTyrSerIlePheLe : 165 !!.!! ! !|||!.!:!!|||:!! ! !!|||! !:!:! !!:!!!!:!: !! alAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCysLeuValTh 260137 : TCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGTCAC : 260193 166 : uProLeuIleThrAlaLysSerLeuThrAsnGlyAsnAsnLeuThrIleArgIleLeu : 184 ! !|||! !|||! ! !! !! !..!.....!.!.!.. !! !:!!!.!:!:||| rValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleValHisLeuLeu 260194 : GGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTG : 260250 185 : ProTyrArgCysAsnPheIleIlePheAspProTyrArgArgProIlePheAspIleV : 204 |||! ! ! !! :!:.!.:!! ! !! !!!!|||!!: !!!:|||| ProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetAsnGluIleV 260251 : CCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGATTG : 260310 205 : alTyrValValHisCysPheCysSerValIleMetTyrSerIleThrThrGlyIleCy : 223 || !||||||!!.! ! !!! .!! !!|||:!! !!|||! !|||..!||||||! alLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrValGlyIlePh 260311 : TTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTT : 260367 224 : sSerLeuAlaAlaLysPheValMetHisAlaCysGlyGlnCysGluIleValMetSer : 242 !|||||||||||| .!...! |||||||||||||||! .!.:!::!!|||..! eSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMetGlu 260368 : CAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAA : 260424 243 : LeuLeuGluAsnLeuIleAspAspAspLysGlnCysSerAspIleValGluSerLysL : 262 ! !:!! !.!.!!!:!:|||!!:...!:!.!. ! !.! ! ! !.! ! !||| TrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaProPheLysG 260425 : TGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTCCTTTCAAGG : 260484 263 : euAlaThrIleIleValGlnHis : 269 ! ! !:!:||||||:!!||| luIleGlyValIleValGluHis 260485 : AGATCGGAGTGATTGTCGAACAT : 260507 vulgar: gi|528747940|gb|AGS43065.1| 10 269 . KQ414889.1 259730 260507 + 339 M 259 777 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259731 260507 339 + . gene_id 14 ; sequence gi|528747940|gb|AGS43065.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259731 260507 . + . KQ414889.1 exonerate:protein2genome:local exon 259731 260507 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259731 260507 339 + . alignment_id 14 ; Query gi|528747940|gb|AGS43065.1| ; Align 259731 11 777 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747940|gb|AGS43065.1| odorant receptor Or3f [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 330 Query range: 10 -> 274 Target range: 266595 -> 267390 11 : LysThrAlaValGlnAsnLysAsnPheAspSerAspValGluTyrAlaIleLysLeuA : 30 :!!:!! !||| .!. !|||.!.:!!||| !!!:|||::!:!::!!|||| GluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerLeuGlnLeuA 266596 : GAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCCTGCAATTGA : 266653 31 : snArgTrpLeuLeuLysProPheGlyIleTrpProLeuAsnSerSerSerThrLysPh : 49 ||||||||!!!|||||||||.!.||| !||||||! ! ||| !!!!:!!|||.! snArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuThrSerLysLe 266654 : ATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCACATCTAAACT : 266710 50 : eAspArgGlyIleSerValIleSerSerPheIleCysCysLeuLeuLeuPhePheVal : 68 !!!:||| !:!!||| ! !! !! ! !!||||||! !! !! !:!!.!.|||..! uGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIleLeuPheThr 266711 : CGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATACTGTTCACC : 266767 69 : MetIleProSerPheValValMetPheValSerGluLysAspPheLysGlyArgLeuG : 88 :!:||||||!!!!!. !! !:!: !!:!!..!!!::!!..!.!!::: !!:!:!!: ValIleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgThrLysValL 266768 : GTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTACGAAAGTGA : 266827 89 : luIleValGlyProThrSerPheIleIleMetValValLeuLysTyrPhePheLeuIl : 107 !!:!: !!|||||| !||| ! .!!:!:! !! !:!!!!.||| ! |||:! ysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrThrThrLeuLe 266828 : AGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACACCACACTGTT : 266884 108 : eThrArgGlyAspThrLeuLysMetCysIleAspThrIleLeuGlyAspTrpSerAsn : 126 : !|||.!! ! !:!!::: |||:!!!!: !!!:! ! !||||||!!!! ! uLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIle 266885 : GCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGATTGGAGGATC : 266941 127 : ValGlnAlaLysGluGluArgLysIleMetPheArgAsnAlaLysIleAlaArgLeuP : 146 ||| ! !|||!!:!:!:!!:!:|||!!.!:!||||||!:!|||!.!|||! !. ValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleGlyArgTyrI 266942 : GTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCGGTCGTTACA : 267001 147 : heThrIleIleCysValSerPheMetTyrCysGlyGlyIlePheTyrSerIlePheLe : 165 !!.!!|||.!!|||!.!:!!|||||| ! ||||||! !:!! !|||!!!:!:.!. leAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCysValIleTh 267002 : TTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGTGATAAC : 267058 166 : uProLeuIleThrAlaLysSerLeuThrAsnGlyAsnAsnLeuThrIleArgIleLeu : 184 ! !!!!!! !! ! !! ! !..!..!..!.!.!.! !! !:!!!.!:!:||| rAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleValHisLeuLeu 267059 : GGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTACATCTGTTG : 267115 185 : ProTyrArgCysAsnPheIleIlePheAspProTyrArgArgProIlePheAspIleV : 204 |||! ! ! ! !! ! !!:.!!! ! !!! !!!!|||! !!!:|||| ProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrAsnGluIleV 267116 : CCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGAACGAGATTG : 267175 205 : alTyrValValHisCysPheCysSerValIleMetTyrSerIleThrThrGlyIleCy : 223 || !||| !!!.! ! ! ! .!! !!|||:!! !!|||! !..!..!||| !! alLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValValGlyAlaPh 267176 : TCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCGGTGCTTT : 267232 224 : sSerLeuAlaAlaLysPheValMetHisAlaCysGlyGlnCysGluIleValMetSer : 242 !|||||||||||| !|||!.! ||||||||||||||| ...:!::!!|||! ! eSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerValLeuMetMet 267233 : CAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTGATGATG : 267289 243 : LeuLeuGluAsnLeuIleAspAspAspLysGlnCysSer<->AspIleValGluSerL : 261 ! !:!!:!!.!.!!!:!::!! ..!!:!.!. !!!:! :!!:!! ! ..!| TrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValCysPheAspL 267290 : TGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTTGCTTCGATA : 267349 262 : ysLeuAlaThrIleIleValGlnHisLeuHisValIleArg : 274 ||:!!!.!..!:!!:!!! !!!.||||||...|||:!:||| ysIleGlyValValValGluHisHisLeuArgValLeuArg 267350 : AGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGAGG : 267390 vulgar: gi|528747940|gb|AGS43065.1| 10 274 . KQ414889.1 266595 267390 + 330 M 245 735 G 0 3 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266596 267390 330 + . gene_id 15 ; sequence gi|528747940|gb|AGS43065.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266596 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266596 267390 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266596 267390 330 + . alignment_id 15 ; Query gi|528747940|gb|AGS43065.1| ; Align 266596 11 735 ; Align 267334 256 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747940|gb|AGS43065.1| odorant receptor Or3f [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 188 Query range: 274 -> 348 Target range: 260782 -> 261856 275 : PheValThrArgValGluAspLeuLeuAsnGluValCysLeuValGluPheLeuGlyC : 294 |||:!!:!!|||:!!||||||:!!:!!|||..!:!!|||!!!:!!|||!!.!!! !!| PheIleSerArgIleGluAspValMetAsnArgIleCysPheLeuGluLeuPheArgC 260783 : TTCATATCGCGTATCGAGGATGTGATGAACCGGATATGCTTCCTGGAGTTGTTCAGGT : 260840 295 : ysThrMetAsnMetCysLeuValGlyTyrTyrIleIleThr >>>> Target Int : 308 |||||:!!:!!!!:||||||:!!||||||||||||:!!! ! 852 b ysThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeuMet++ 260841 : GCACTCTGGATATATGTCTACTTGGCTACTATATTCTTATGgt............... : 260884 309 : ron 1 >>>> GlyPheGluSerAlaAspThrValArgPheIleThrPheThrLeuL : 323 p ! !!::! ..! !|||! ! !!.!.!. !|||!:! !:!!: ++GluTrpAlaGluGlnAspIleGlnAsnLeuSerThrTyrPheMetM 260885 : ..........agGAATGGGCTGAGCAAGATATACAAAATCTGTCCACGTATTTCATGA : 261779 324 : euPheIleSerPheThrPheAsnIlePheValPheCysTyrIleGlyGlnIleLeuTh : 342 !!.!.|||:!!.!! !||||||:!!|||:!!.!!||||||||||||:!!|||||||| etLeuIleAlaIleCysPheAsnValPheIleIleCysTyrIleGlyGluIleLeuTh 261780 : TGCTGATAGCGATCTGTTTCAATGTATTTATAATCTGTTACATCGGTGAAATACTAAC : 261836 343 : rAsnHisCysHisGlnIle : 348 |.!.!!. !!.!!.:!: rGluGlnValGlnHisLeu 261837 : GGAACAGGTACAACATTTG : 261856 vulgar: gi|528747940|gb|AGS43065.1| 274 348 . KQ414889.1 260782 261856 + 188 M 33 99 5 0 2 I 0 848 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 260783 261856 188 + . gene_id 16 ; sequence gi|528747940|gb|AGS43065.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 260783 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260783 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 260882 260883 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260882 261733 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 261732 261733 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 261734 261856 . + . KQ414889.1 exonerate:protein2genome:local exon 261734 261856 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 260783 261856 188 + . alignment_id 16 ; Query gi|528747940|gb|AGS43065.1| ; Align 260783 275 99 ; Align 261734 308 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747940|gb|AGS43065.1| odorant receptor Or3f [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 302 -> 402 Target range: 297445 -> 297818 303 : TyrTyrIleIleThrGlyPheGluSerAlaAspThrValArgPheIleThrPheThrL : 322 |||:::...... |||!:::!!!!! !|||! !:!! ! :!!|||.!! ! TyrHisPhePheGlnGlyTrpLysThrHisAspMetIlePheGlyValThrIleGlyG 297446 : tatcatttttttcaggGATGGAAAACTCACGATATGATTTTTGGGGTAACGATCGGCG : 297503 323 : euLeuPheIleSerPheThrPheAsnIlePheValPheCysTyrIleGlyGlnIleLe : 341 !!!!.!.:!!|||.!!||||||||||||||||||!!.|||:!! !|||:!!:!!|| lyPheMetLeuSerIleThrPheAsnIlePheValLeuCysHisAlaGlyGluLeuLe 297504 : GTTTCATGCTTTCGATCACTTTTAATATATTCGTATTATGTCATGCAGGTGAACTTCT : 297560 342 : uThrAsnHis >>>> Target Intron 1 >>>> CysHisGlnIleGlyGluA : 351 |..!.!..!. 73 bp ..!.!.:!!.!!|||.!.| uValGluGlu++ ++AlaGluLysPheGlyAsnA 297561 : TGTCGAGGAGgt.........................agGCTGAAAAATTCGGCAATG : 297663 352 : laSerTyrMetIleAspTrpTyrArgPheProGlyThrGlnAlaArgPheLeuIleLe : 370 ||:!!|||! |||!!:||||||!.!!!.||| !!.!::!|||! ! !|||:!:|| laAlaTyrAsnIleGluTrpTyrAsnLeuProProAsnArgAlaLeuAspLeuValLe 297664 : CAGCTTATAACATCGAATGGTACAACTTACCGCCAAACAGGGCTCTCGATCTGGTGTT : 297720 371 : uLeuIleGlyValAlaAsnArgProIleArgLeuThrAlaGlyLysMetValGlnPhe : 389 |:!!||||||:!!|||!!. !||| |||||||||...||||||::: ...... uMetIleGlyIleAlaLysPheProProArgLeuThrGlyGlyLysIlePheAspIle 297721 : AATGATCGGTATAGCAAAATTTCCACCGAGGCTCACAggtggaaaaatattcgatata : 297777 390 : SerPheProCysPheCysAsnValIleLysAlaAlaMet : 402 |||.!. ! ||| !! !||| !!:: :::::: SerIleAsnThrPheSerAlaValArgArgGlnSerLeu 297778 : tCGATAAACACGTTCAGTGCCGTACGTAgacaaagttta : 297818 vulgar: gi|528747940|gb|AGS43065.1| 302 402 . KQ414889.1 297445 297818 + 174 M 42 126 5 0 2 I 0 69 3 0 2 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297446 297818 174 + . gene_id 17 ; sequence gi|528747940|gb|AGS43065.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 297446 297571 . + . KQ414889.1 exonerate:protein2genome:local exon 297446 297571 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 297572 297573 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 297572 297644 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 297643 297644 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 297645 297818 . + . KQ414889.1 exonerate:protein2genome:local exon 297645 297818 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297446 297818 174 + . alignment_id 17 ; Query gi|528747940|gb|AGS43065.1| ; Align 297446 303 126 ; Align 297645 345 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747940|gb|AGS43065.1| odorant receptor Or3f [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 155 Query range: 326 -> 412 Target range: 224445 -> 224770 327 : PheThrPheAsnIlePheValPheCysTyrIleGlyGlnIleLeuThrAsnHisCysH : 346 ||| ... ::: !!:! !|||.!! !..!:!!!!! ! ...|||. PheLysIleIleLeuHisHisTyrHisTyrPheLeuSerLeuPhePheProGlnCysG 224446 : tttaaaattattcttcacCACTACCACTATTTTTTATCGCTATTTTTTCCtcagtgtg : 224503 347 : isGlnIleGlyGluAlaSerTyrMetIleAspTrpTyrArgPheProGlyThrGlnAl : 365 ..:::||||||::!!.!||||||||||||||||||||||||!!. !!|||!.!:!! luLysIleGlyGlnValSerTyrMetIleAspTrpTyrArgLeuThrGlyAsnLysLy 224504 : aaaaaattggacaAGTGTCGTACATGATCGACTGGTATCGGTTGACTGGAAATAAGAA : 224560 366 : aArgPheLeuIleLeuLeuIleGlyValAlaAsnArgProIleArgLeuThrAlaGly : 384 !! !! !! !||||||:!!|||!.!:!!:!!||| ! !!|||!:!|||||||||||| sLeuCysCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAlaGly 224561 : ACTATGCTGCATTCTGATAATCGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGA : 224617 385 : LysMetValGlnPheSerPheProCysPhe{C} >>>> Target Intron 1 >> : 395 !!.||||||:!!.!.!!!.!. !! !|||{ } 67 bp AsnMetValGluLeuCysLeuThrThrPhe{A}++ 224618 : AACATGGTCGAACTGTGTCTAACCACTTTC{G}gt....................... : 224653 396 : >> {ys}AsnValIleLysAlaAlaMetAlaTyrLeuAsnIleIleArgThrValTh : 412 { !} ! |||:!!|||.!!|||:!:|||!:!||||||:!::!!||||||:!!|| +-{sp}***ValValLysThrAlaValAlaPheLeuAsnValLeuArgThrLeuTh 224654 : ..aa{AT}TAGGTTGTCAAGACAGCTGTCGCATTTTTGAACGTGTTACGAACATTGac : 224768 413 : r : 412 | r 224769 : t : 224770 vulgar: gi|528747940|gb|AGS43065.1| 326 412 . KQ414889.1 224445 224770 + 155 M 68 204 S 0 1 5 0 2 I 0 63 3 0 2 S 1 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224446 224770 155 + . gene_id 18 ; sequence gi|528747940|gb|AGS43065.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 224446 224650 . + . KQ414889.1 exonerate:protein2genome:local exon 224446 224650 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 224651 224652 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 224651 224717 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 224716 224717 . + . intron_id 0 ; splice_site "AA" KQ414889.1 exonerate:protein2genome:local cds 224718 224770 . + . KQ414889.1 exonerate:protein2genome:local exon 224718 224770 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224446 224770 155 + . alignment_id 18 ; Query gi|528747940|gb|AGS43065.1| ; Align 224446 327 204 ; Align 224720 396 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747940|gb|AGS43065.1| odorant receptor Or3f [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 339 -> 397 Target range: 214848 -> 215022 340 : IleLeuThrAsnHisCysHisGlnIleGlyGluAlaSerTyrMetIleAspTrpTyrA : 359 |||:!! !.!.!!.||| ! :!!:!!||||||!.!||||||||||||!!:||||||| IleMetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrA 214849 : ATTATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACC : 214906 360 : rgPheProGlyThrGlnAlaArgPheLeuIleLeuLeuIleGlyValAlaAsnArgPr : 378 ||!!.||||||!.!:!! !! !! !! !||||||:!!!!:!.!:!!:!!||| ! ! rgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSe 214907 : GATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATC : 214963 379 : oIleArgLeuThrAlaGlyLysMetValGlnPheSerPheProCysPheCysAsnVal : 397 !:!!!:!!!!|||||||||!!.||||||:!!.!.|||.!! ! !||| !!!:!||| rValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214964 : CGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215020 vulgar: gi|528747940|gb|AGS43065.1| 339 397 . KQ414889.1 214848 215022 + 141 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214849 215022 141 + . gene_id 19 ; sequence gi|528747940|gb|AGS43065.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214849 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214849 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214849 215022 141 + . alignment_id 19 ; Query gi|528747940|gb|AGS43065.1| ; Align 214849 340 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747940|gb|AGS43065.1| odorant receptor Or3f [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 342 -> 412 Target range: 277548 -> 277842 343 : AsnHisCysHisGlnIleGlyGluAlaSerTyrMetIleAspTrpTyrArgPheProG : 362 ...!!.||| ! :!!:!!||||||!.! !||||||! :!!|||||| !!!.|||! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 363 : lyThrGlnAlaArgPheLeuIleLeuLeuIleGlyValAlaAsnArgProIleArgLe : 381 !! !.!. !! ! !|||:!!|||:!!|||..! !:!!!:! |||::::: spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 382 : uThrAlaGlyLysMetValGlnPheSerPheProCysPheCysAsn >>>> Targe : 397 :||||||||||||::::::|||...||| ! ! ||| !!:!! eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAsp++ 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATgt.......... : 277713 398 : t Intron 1 >>>> ValIleLysAlaAlaMetAlaTyrLeuAsnIleIleArgTh : 410 84 bp |||||||||.!!.!!.!.|||||||||||||||:::||| ++ValIleLysThrThrPheAlaTyrLeuAsnIleLeuArgGl 277714 : ...............agGTAATAAAAACCACTTTCgcgtatttaaatattctacgCCA : 277834 411 : rValThr : 412 !..!||| nThrThr 277835 : AACGACG : 277842 vulgar: gi|528747940|gb|AGS43065.1| 342 412 . KQ414889.1 277548 277842 + 136 M 54 162 5 0 2 I 0 80 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277842 136 + . gene_id 20 ; sequence gi|528747940|gb|AGS43065.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 277549 277710 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277710 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 277711 277712 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 277711 277794 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 277793 277794 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 277795 277842 . + . KQ414889.1 exonerate:protein2genome:local exon 277795 277842 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277842 136 + . alignment_id 20 ; Query gi|528747940|gb|AGS43065.1| ; Align 277549 343 162 ; Align 277795 397 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747940|gb|AGS43065.1| odorant receptor Or3f [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 303 -> 341 Target range: 305088 -> 305202 304 : TyrIleIleThrGlyPheGluSerAlaAspThrValArgPheIleThrPheThrLeuL : 323 |||::: !! !!::||||||::!:!!||||||!!!.!!! !|||!:!|||:!!| TyrLeu***GlnAspTrpGluSerSerAsnThrValSerLeuThrThrTyrThrValL 305089 : tatttgtaacaGGATTGGGAGAGCAGTAATACCGTTAGTCTTACAACATATACAGTGT : 305146 324 : euPheIleSerPheThrPheAsnIlePheValPheCysTyrIleGlyGlnIleLeu : 341 ||.!.|||||| ! |||||||||||||||:!!!!.||||||||||||:!!|||||| euLeuIleSerValThrPheAsnIlePheIleLeuCysTyrIleGlyGluIleLeu 305147 : TACTGATATCTGTAACATTTAATATATTCATATTATGCTACATTGGTGAGATTCTT : 305202 vulgar: gi|528747940|gb|AGS43065.1| 303 341 . KQ414889.1 305088 305202 + 113 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305089 305202 113 + . gene_id 21 ; sequence gi|528747940|gb|AGS43065.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 305089 305202 . + . KQ414889.1 exonerate:protein2genome:local exon 305089 305202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305089 305202 113 + . alignment_id 21 ; Query gi|528747940|gb|AGS43065.1| ; Align 305089 304 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747940|gb|AGS43065.1| odorant receptor Or3f [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 273 -> 306 Target range: 224137 -> 224236 274 : ArgPheValThrArgValGluAspLeuLeuAsnGluValCysLeuValGluPheLeuG : 293 ||||||:!!|||!.!..!||| ! !|||.!.:!!|||! !!!||||||||||||| ArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValGluPheLeuG 224138 : AGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGGAATTTCTAG : 224195 294 : lyCysThrMetAsnMetCysLeuValGlyTyrTyrIleIle : 306 |||||! !:!!|||!!:||||||:!!|||||||||:!!||| lyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIle 224196 : GCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATT : 224236 vulgar: gi|528747940|gb|AGS43065.1| 273 306 . KQ414889.1 224137 224236 + 112 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224138 224236 112 + . gene_id 22 ; sequence gi|528747940|gb|AGS43065.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224138 224236 . + . KQ414889.1 exonerate:protein2genome:local exon 224138 224236 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224138 224236 112 + . alignment_id 22 ; Query gi|528747940|gb|AGS43065.1| ; Align 224138 274 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747940|gb|AGS43065.1| odorant receptor Or3f [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 273 -> 342 Target range: 214459 -> 214734 274 : ArgPheValThrArgValGluAspLeuLeuAsnGluValCysLeuValGluPheLeuG : 293 ||||||:!! !! !|||||| ! !|||...:!!|||! !!!!!.!|||!!.|||! ArgPheLeuGluLeuValGluLysAlaLeuArgGlnValSerPheAlaGluLeuLeuV 214460 : AGATTCTTAGAGCTCGTGGAGAAAGCACTTCGGCAAGTATCTTTCGCTGAATTATTAG : 214517 294 : lyCysThr >>>> Target Intron 1 >>>> MetAsnMetCysLeuValGly : 302 !|||||| 68 bp :::||| alCysThr++ +-AsnIleSerAsnIleValLys 214518 : TATGCACGgt.........................aaaatatatcaaacatcgtcaaa : 214612 303 : TyrTyrIleIleThrGlyPheGluSerAlaAspThrValArgPheIleThrPheThrL : 322 ::: |||::: !!::.!.||| !:!! !..!! ! :!!|||!:!..!: PheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValThrTyrValV 214613 : tttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAACTTACGTGG : 214672 323 : euLeuPheIleSerPheThrPheAsnIlePheValPheCysTyrIleGlyGlnIleLe : 341 !!|||!:!||||||...|||||||||||||||:::|||||||||||||||:!!:!!:! alLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuVa 214673 : TGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGGCGAGCTTGT : 214729 342 : uThr : 342 !:!! lSer 214730 : GTCT : 214734 vulgar: gi|528747940|gb|AGS43065.1| 273 342 . KQ414889.1 214459 214734 + 108 M 22 66 5 0 2 I 0 64 3 0 2 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214460 214734 108 + . gene_id 23 ; sequence gi|528747940|gb|AGS43065.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 214460 214525 . + . KQ414889.1 exonerate:protein2genome:local exon 214460 214525 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 214526 214527 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 214526 214593 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214592 214593 . + . intron_id 0 ; splice_site "aa" KQ414889.1 exonerate:protein2genome:local cds 214594 214734 . + . KQ414889.1 exonerate:protein2genome:local exon 214594 214734 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214460 214734 108 + . alignment_id 23 ; Query gi|528747940|gb|AGS43065.1| ; Align 214460 274 66 ; Align 214594 296 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747940|gb|AGS43065.1| odorant receptor Or3f [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 346 -> 411 Target range: 292398 -> 292593 347 : GlnIleGlyGluAlaSerTyrMetIleAspTrpTyrArgPheProGlyThrGlnAlaA : 366 :!!|||!.!.!.||||||||| ! !!!:||||||!.!.!.||| !! !:!!|||| GluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgArgLysAlaA 292399 : GAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGGCTC : 292456 367 : rgPheLeuIleLeuLeuIleGlyValAlaAsnArgProIleArgLeuThrAlaGlyLy : 385 || !:!!:!!|||:!!:!!!.!:!!.!!!!.!.!||||||!:!|||||||||||||| rgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuThrAlaGlyLy 292457 : GTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGGCAA : 292513 386 : sMetValGlnPheSerPheProCysPheCysAsnValIleLysAlaAlaMetAlaTyr : 404 |!!: !! .!!|||!!. ! !||| !! !||| !:!!:!! !:!:!.!! sIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSerLysLeuValLeu 292514 : AATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCAAAACTAGTCTTG : 292570 405 : LeuAsnIleIleArgThrVal : 411 :!!:!! ! !|||! !||| IleHis***GluArgIleVal 292571 : ATACACTAAGAACGTATAGTT : 292593 vulgar: gi|528747940|gb|AGS43065.1| 346 411 . KQ414889.1 292398 292593 + 107 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292399 292593 107 + . gene_id 24 ; sequence gi|528747940|gb|AGS43065.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292399 292593 . + . KQ414889.1 exonerate:protein2genome:local exon 292399 292593 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292399 292593 107 + . alignment_id 24 ; Query gi|528747940|gb|AGS43065.1| ; Align 292399 347 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747940|gb|AGS43065.1| odorant receptor Or3f [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 308 -> 341 Target range: 291371 -> 291470 309 : PheGluSerAlaAspThrValArgPheIleThrPheThrLeuLeuPheIleSerPheT : 328 !::||||||::!|||:!!:!! !!.!.:!!|||!:!..! !|||.!!! !||||||| TrpGluSerSerAspSerIleGlyIleLeuThrTyrValThrLeuLeuThrSerPheT 291372 : TGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTCACTCTCCTCACTTCTTTCA : 291429 329 : hrPheAsnIlePheValPheCysTyrIleGlyGlnIleLeu : 341 |||||||||||.!.:!!|||||||||:!!|||:!!:!!||| hrPheAsnIleLeuIlePheCysTyrValGlyGluLeuLeu 291430 : CTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTCTT : 291470 vulgar: gi|528747940|gb|AGS43065.1| 308 341 . KQ414889.1 291371 291470 + 104 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 291372 291470 104 + . gene_id 25 ; sequence gi|528747940|gb|AGS43065.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 291372 291470 . + . KQ414889.1 exonerate:protein2genome:local exon 291372 291470 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 291372 291470 104 + . alignment_id 25 ; Query gi|528747940|gb|AGS43065.1| ; Align 291372 309 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 778 Query range: 15 -> 407 Target range: 284496 -> 287252 16 : AsnLysAsnTyrAspThrAspValGluTyrAlaIleLysLeuAsnArgTrpLeuLeuL : 35 :!!..!!..!::||||||||| ! !|||::!:!!:!!:!!|||||||||!!!|||| AspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuL 284497 : GATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCA : 284554 36 : ysProIleGlyValTrpProLeuGluLeuSerSerSerArgThrGluArgIleValTh : 54 |||||||||||||||||||||||...|||!!! !!!!! ! !|||!:!||| !:! ysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSe 284555 : AACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTC : 284611 55 : rIleThrThrAlaValThrCysCysLeuLeuMetSerPheValLeuThrIleProCys : 73 !:!:..! !|||:!!! ! !!|||!!!|||!!:.!!|||:!!|||..! !..! rValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAla 284612 : CGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCT : 284668 74 : CysIleGluMetPheSerSerGlnLysAspPheLysSerArgLeuGluMetLeuGlyP : 93 ! !:!!.!!..!!.! |||.!! ! !!!!:!:!!:!!|||:!!|||| LeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyP 284669 : CTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTC : 284728 94 : roSerSerPheCysValMetAlaValIleLysPhePhePhePheValIleArgGlyLy : 112 || !|||||||||:!!||||||!.!||||||!:!!:!.!!.!.:!! |||||| roLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIleSerArgGlyGl 284729 : CTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAATTTCGCGCGGCGG : 284785 113 : sGluIleArgPheCysIleAspSerValValThrAsp{Tr} >>>> Target Int : 125 :!!||| !! |||:!: ! ..!:!! !.!!|||{||} 1012 b yLysIleGlyGlnCysValLysAspIleArgAlaAsp{Tr}++ 284786 : CAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGAC{TG}gt............... : 284828 126 : ron 1 >>>> {p}ArgAsnValAspValProGluGluArgAsnIleMetLeuArgL : 140 p {|}! !::: !... |||||||||...|||||| ! !! +-{p}LeuSerHisSerGlnGluGluGluArgGluIleMetArgAspS 284829 : ..........ac{G}CTTTCGCATAGtcaagaagaggagagagagatcaTGAGGGACA : 285881 141 : ysAlaLysSerAlaArgPheLeuThrThrValCysAlaLeuPheMetTyrTyrGlyGl : 159 ..|||!:!! !!.!|||! !|||.!!! ! !!|||||| !|||||||||! !||||| erAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrSerGlyGl 285882 : GCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATTCCGGAGG : 285938 160 : yIlePheTyrThrThrTyrLeuProLeuThrThrAlaLysAlaLeuSerThrGluAsn : 178 |.!!|||||||||||| :!!|||||| !|||!.!:::.!! !! !! !!!:||| yPhePheTyrThrThrValMetProLeuCysThrValArgThrGluIleIleAspAsn 285939 : ATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAGATCATCGACAAC : 285995 179 : ValThrIleArgIleLeuProTyrArgCysAsnPheIleLeuPheAspProTyrAlaP : 198 ! !|||:!:||| !! ! !!!:!! ! ! !! ! !|||.!!|||||| !.!! GluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrS 285996 : GAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCGATCCGCGTACCA : 286055 199 : roLeuPhePheAspIleIleTyrPheLeuGlnCysLeuSerAlaAlaPheMetPheTh : 217 !! !! |||!!:|||:!: ! |||:!!|||||||||:!!||| ! !!!!:!:!:! erProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValIleTyrSe 286056 : GCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTATATACTC : 286112 218 : rLeuThrSerGlyValCysSerLeuAlaAlaAsnPheIleIleHisAlaCysGlyGln : 236 !:!!||| !|||!.!||||||||||||||| |||:!!!!:|||!.!||||||||| rValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHisValCysGlyGln 286113 : GGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCACGTCTGTGGACAA : 286169 237 : CysGlnIleIleGlyLeuLeuLeuGluAsnLeuValAspGly<->ArgGlyAsnThrS : 255 ! !::!|||:!!! ! ! !|||!!:!!.|||||||||||| !:!|||!..! !. PheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValLysGlyArgLysG 286170 : TTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGAAAGGGAGGAAGG : 286229 256 : er<->ThrThrLeuGluLysArgIleAlaValValIleValArgHisLeuHisLeuLe : 273 !! !:!|||! !|||:!!|||:!:!.!! !:!!|||! !!.!|||||| ! :!!|| lyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLe 286230 : GGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACT : 286286 274 : u{Ar} >>>> Target Intron 2 >>>> {g}PheValThrArgValGluAsp : 281 |{ !} 408 bp {!}|||:!!:!!!:!:!!|||! u{Gl}++ ++{y}PheIleSerGlnIleGluGly 286287 : G{GG}gt.........................ag{T}TTTATATCGCAAATCGAGGGG : 286718 282 : ValLeuAsnGluValCysLeuValGluPheLeuGlyCysThrLeuAsnIleCysLeuL : 301 :!!|||||||||:!!|||!!!|||||| ! :!!|||||||||||||||||||||!!!| LeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsnIleCysPheL 286719 : CTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTT : 286778 302 : euGlyTyrTyrPheIleThr >>>> Target Intron 3 >>>> GlyLeuGlu : 310 |||||||||||!!.:!:||| 80 bp ! !! !||| euGlyTyrTyrLeuLeuThr++ ++GluTrpGlu 286779 : TGGGATATTATTTACTGACGgt.........................agGAATGGGAG : 286885 311 : ThrAlaAspThrAlaArgPheValThrPheAlaLeuLeuPheIleSerPheThrPheA : 330 !::!!!:||| ! !! :!!|||!:!..! !|||.!.:!!||||||||||||| GlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValSerPheThrPheA 286886 : CAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTATCTTTCACGTTCA : 286945 331 : snIlePheIlePheCysTyrIleGlyGlnLeuLeuThrAsnHis >>>> Target : 345 ||:!!||||||.!!||||||||||||:!!:!!|||:!!.!.!.. 74 snValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGln++ 286946 : ACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt............ : 286992 346 : Intron 4 >>>> CysHisGlnIleGlyGluIleSerTyrThrIleAspTrpTyrA : 359 bp ||| :!!:!!||| ! !!!!|||! !||||||||||||| ++CysLeuLysValGlyLeuSerThrTyrMetIleAspTrpTyrA 286993 : .............agtGCTTAAAAGTCGGCTTGTCAACTTACATGATCGACTGGTATC : 287106 360 : rgIleProGlyAlaGlnAlaArgPheLeuIleLeuLeuIleAlaIleAlaAsnArgPr : 378 ||:!:|||||| ! !|||!:! !|||||||||:!!.!!|||:!::!!||| ! ! rgLeuProGlyLysThrAlaGlnGlyLeuIleLeuIlePheAlaValSerAsnSerSe 287107 : GTTTGCCAGGAAAAACAGCTCAAGGTTTGATACTGATATTCGCCGTGTCGAATTCTTC : 287163 379 : oValThrIleThrAlaGlyLysIleValGlnLeuSerPheProCysPheArgAspVal : 397 !:!!! !:!!|||||||||||||||:!!.!.||||||!!. ! !!||| !!..!||| rIleLysLeuThrAlaGlyLysIleIleAspLeuSerLeuSerSerPheCysSerVal 287164 : CATAAAATTAACAGCTGGAAAGATCATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTG : 287220 398 : LeuLysAlaAlaLeuAlaTyrLeuAsnMet : 407 !! ! !|||:!!|||! !:!!:!! SerIleIleAsnLeuSerTyrTyrHisLeu 287221 : AGTATCATAAATTTATCCTATTATCATTTG : 287252 vulgar: gi|528747938|gb|AGS43064.1| 15 407 . KQ414889.1 284496 287252 + 778 M 109 327 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 125 375 G 0 3 M 5 15 G 0 3 M 18 54 S 0 2 5 0 2 I 0 404 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284497 287252 778 + . gene_id 1 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284497 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284497 284825 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 6 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286698 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 286989 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 286989 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286990 286991 . + . intron_id 4 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 286990 287063 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 287062 287063 . + . intron_id 3 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 287064 287252 . + . KQ414889.1 exonerate:protein2genome:local exon 287064 287252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284497 287252 778 + . alignment_id 1 ; Query gi|528747938|gb|AGS43064.1| ; Align 284497 16 327 ; Align 285839 126 375 ; Align 286217 251 15 ; Align 286235 256 54 ; Align 286700 275 99 ; Align 286879 308 111 ; Align 287064 345 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 739 Query range: 15 -> 407 Target range: 278549 -> 280465 16 : AsnLysAsnTyrAspThrAspValGluTyrAlaIleLysLeuAsnArgTrpLeuLeuL : 35 :!!..!!..!:::!!|||||| ! !|||::!:!!:!!:!!|||||||||!!!|||| AspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgTrpPheLeuL 278550 : GATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTTGGTTTCTCA : 278607 36 : ysProIleGlyValTrpProLeuGluLeuSerSerSerArgThrGluArgIleValTh : 54 |||||||||||||||||||||||...|||!!! !!!!! ! !|||!:!||| !:! ysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGluLysIleSerSe 278608 : AACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGAAAAGATCAGTTC : 278664 55 : rIleThrThrAlaValThrCysCysLeuLeuMetSerPheValLeuThrIleProCys : 73 !:!:..! !|||:!!! ! !!|||!!!|||!!:.!!|||:!!|||..! !..! rValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeuValProCysAla 278665 : CGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTGGTACCGTGCGCT : 278721 74 : CysIleGluMetPheSerSerGlnLysAspPheLysSerArgLeuGluMetLeuGlyP : 93 ! !:!!.!!..!!.! |||.!! ! !!!!:!:!!:!!|||:!!|||| LeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleLysMetIleGlyP 278722 : CTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCAAAATGATCGGTC : 278781 94 : roSerSerPheCysValMetAlaValIleLysPhePhePhePheValIleArgGlyLy : 112 || !|||||||||..!||||||..!||||||!:!!:!.!!.!.:!! |||||| roLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMetSerArgGlyGl 278782 : CTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAATGTCGCGCGGCGG : 278838 113 : sGluIleArgPheCysIleAspSerValValThrAspTrpArg<-><-><->AsnVal : 128 :!!||| !! |||:!::!!..!:!! !||||||||| ! ::: ! yLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeuThrLeuSerTyr 278839 : CAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTTACACTTTCGTAT : 278895 129 : AspValProGluGluArgAsnIleMetLeuArgLysAlaLysSerAlaArgPheLeuT : 148 |||||||||...|||||| ! !!..|||!:!! !!.!|||! !|||. ArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuA 278896 : CGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGG : 278955 149 : hrThrValCysAlaLeuPheMetTyrTyrGlyGlyIlePheTyrThrThrTyrLeuPr : 167 !!! ! !! !!||| !|||||||||! !||||||:!!|||||||||.!! :!!|| laIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrThrAlaValMetPr 278956 : CGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACACCGCCGTGATGCC : 279012 168 : oLeuThrThrAlaLysAlaLeuSerThrGluAsnValThrIleArgIleLeuProTyr : 186 |||| !.!!!.!:::.!! !! !! !!!:|||! !|||:!:||| !! ! !!!:! oLeuPheAlaValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPhe 279013 : GTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGATCTCAAGCGTTC : 279069 187 : ArgCysAsnPheIleLeuPheAspProTyrAlaProLeuPhePheAspIleIleTyrP : 206 ! ! ! !! ! !|||.!!|||||| !.!! !! !! |||!!:|||:!: ! | ProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnP 279070 : CCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAAT : 279129 207 : heLeuGlnCysLeuSerAlaAlaPheMetPheThrLeuThrSerGlyValCysSerLe : 225 ||:!!|||||||||:!!||| ! !!:!:!:!:!!:!!||| !|||!.!|||||||| heMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGlyAlaCysSerLe 279130 : TCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGGAGCTTGCAGCTT : 279186 226 : uAlaAlaAsnPheIleIleHisAlaCysGlyGlnCysGlnIleIleGlyLeuLeuLeu : 244 | !||| |||:!!!!:|||!.!|||||||||! !::!|||:!!! ! ! !||| uIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeu 279187 : GATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTTGTGACAAAGCTG : 279243 245 : GluAsnLeuValAspGly<->ArgGlyAsnThrSer<->ThrThrLeuGluLysArgI : 262 !!:!!.|||:!!|||||| !:!|||!..! !||| !:!|||! !|||:!!|||: AspLysLeuIleAspGlyValLysGlyArgLysSerLeuSerThrHisGluGlnArgL 279244 : GATAAGCTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGCATGAACAACGAC : 279303 263 : leAlaValValIleValArgHisLeuHisLeuLeu{Ar} >>>> Target Intro : 274 !:!.!! !:!!|||! !!.!|||||| ! :!!|||{ !} 571 bp euGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 279304 : TGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt................. : 279343 275 : n 1 >>>> {g}PheValThrArgValGluAspValLeuAsnGluValCysLeuVal : 289 {!}|||:!!:!!!:!:!!|||! :!!|||||||||:!!|||!!!||| ++{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheVal 279344 : ........ag{T}TTTATATCGCAAATCGAGGGGCTCCTGAACGAAATATGTTTCGTC : 279955 290 : GluPheLeuGlyCysThrLeuAsnIleCysLeuLeuGlyTyrTyrPheIleThr >> : 308 ||| ! :!!|||||||||||||||||||||!!!||| !||||||!!.:!!||| GluValIleGlyCysThrLeuAsnIleCysPheLeuThrTyrTyrLeuLeuThr++ 279956 : GAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGACATATTATTTACTCACGgt.. : 280014 309 : >> Target Intron 2 >>>> GlyLeuGluThrAlaAspThrAlaArgPheVal : 318 80 bp ! !! !||| ! !|||.!! ! !! !! ++GluTrpGluGlnAsnAspAlaIleGlyThrPhe 280015 : .......................agGAATGGGAGCAAAATGACGCTATAGGAACGTTC : 280122 319 : ThrPheAlaLeuLeuPheIleSerPheThrPheAsnIlePheIlePheCysTyrIleG : 338 |||!:! !:!!!!!.!!||||||!!.|||||||||:!!||||||.!!|||||||||| ThrTyrLeuMetPheLeuIleSerLeuThrPheAsnValPheIleLeuCysTyrIleG 280123 : ACGTATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATACTCTGTTACATCG : 280182 339 : lyGlnLeuLeuThrAsnHis >>>> Target Intron 3 >>>> CysHisGln : 347 ||:!!:!!|||:!!.!.!.. 74 bp ||| :!! lyGluIleLeuSerGluGln++ ++CysLeuLys 280183 : GTGAAATTCTCTCCGAACaggt.........................agTGCTTAAAA : 280283 348 : IleGlyGluIleSerTyrThrIleAspTrpTyrArgIleProGlyAlaGlnAlaArgP : 367 :!!|||! ! !!!!|||! !|||||||||||||||:!:|||||| !:!!|||!:! ValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnG 280284 : GTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAG : 280343 368 : heLeuIleLeuLeuIleAlaIleAlaAsnArgProValThrIleThrAlaGlyLysIl : 386 !|||||||||:!!.!!|||:!::!!||| ! !!:!!! !:!!|||||||||||||| lyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIl 280344 : GTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGAT : 280400 387 : eValGlnLeuSerPheProCysPheArgAspValLeuLysAlaAlaLeuAlaTyrLeu : 405 |:!!.!.||||||!!. ! !!||| !!..!||| !! ! !|||:!!|||! ! eIleAspLeuSerLeuSerSerPheCysSerValSerIleIleAsnLeuSerTyrTyr 280401 : CATCGATCTCTCTTTAAGCAGCTTCTGCAGCGTGAGTATCATAAATTTATCCTATTAT : 280457 406 : AsnMet : 407 :!!:!! HisLeu 280458 : CATTTG : 280465 vulgar: gi|528747938|gb|AGS43064.1| 15 407 . KQ414889.1 278549 280465 + 739 M 111 333 G 0 9 M 124 372 G 0 3 M 5 15 G 0 3 M 18 54 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 37 111 5 0 2 I 0 70 3 0 2 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278550 280465 739 + . gene_id 2 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278550 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278550 279340 . + . insertions 15 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280202 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280202 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280203 280204 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 280203 280276 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 280275 280276 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280277 280465 . + . KQ414889.1 exonerate:protein2genome:local exon 280277 280465 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278550 280465 739 + . alignment_id 2 ; Query gi|528747938|gb|AGS43064.1| ; Align 278550 16 333 ; Align 278892 127 372 ; Align 279267 251 15 ; Align 279285 256 54 ; Align 279913 275 99 ; Align 280092 308 111 ; Align 280277 345 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 709 Query range: 8 -> 397 Target range: 217126 -> 219671 9 : LysIleLysSerAspIleProAsnLysAsnTyrAspThrAspValGluTyrAlaIleL : 28 ||| !:!!||| !! ! !!:!! ! .!.|||::: ::::::... ::!|||: LysGluGlnSerProArgThrAspTyrGluTyrGluLysAsnIleAsnLeuSerIleG 217127 : AAGGAACAATCCCCCAGAACCGACTACGAgtacgagaaaaatataaatctcaGTATCC : 217184 29 : ysLeuAsnArgTrpLeuLeuLysProIleGlyValTrpProLeuGluLeuSerSerSe : 47 !!! !|||||||||||||||||||||!!:|||:!!|||||| !..!! !!!!!!!!! lnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnSerArgThrThrTh 217185 : AATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACTCACGTACCACCAC : 217241 48 : rArgThrGluArgIleValThrIleThrThrAlaValThrCysCysLeuLeuMetSer : 66 !|||:!!..!!:!|||:!! !! ! !! ! !!.! !|||! ! !|||!!:||| rArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTyrGlyLeuIleSer 217242 : CAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTACGGTTTGATAAGC : 217298 67 : PheValLeuThrIleProCysCysIleGluMetPheSerSerGlnLysAspPheLysS : 86 ||| ||| !:!!||||||! !!!: ! :!!||| !..! :!!|||.!! ! . Phe---LeuPheValProCysSerMetTyrValPheLeuGluValGluAspLeuTyrA 217299 : TTT---CTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAGATCTCTACG : 217355 87 : erArgLeuGluMetLeuGlyProSerSerPheCysValMetAlaValIleLysPhePh : 105 .!!:!|||:!!:!!!!!||||||! !! !||||||||||||||| !!:!!|||!:!!: spLysLeuLysLeuPheGlyProLeuIlePheCysValMetAlaPheValLysTyrTy 217356 : ACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGTCAAGTATTA : 217412 106 : ePhePheValIleArgGlyLysGluIleArgPheCysIleAspSerValValThrAsp : 124 !! !.!.:!!:!!!.! ! !!!:|||||| |||:!: !!!:!!! ! !||| rSerLeuIleValHisLysAlaAspIleArgGluCysValArgArgIleGluArgAsp 217413 : CTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATCGAACGGGAC : 217469 125 : TrpArgAsnValAspValProGluGluArgAsnIleMetLeuArgLysAlaLysSerA : 144 |||||||||||| ! !:!!!!:|||.!. |||:!! !!!.|||!!.! !! TrpArgAsnValArgCysGluLysAspArgGluAlaMetIleValAsnAlaAsnPheG 217470 : TGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACGCGAATTTTG : 217529 145 : laArgPheLeuThrThrValCysAlaLeuPheMetTyrTyrGlyGlyIlePheTyrTh : 163 .!||| |||..! !:!!|||.!!!!!||||||||| !||| :::|||||| lyArgLysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheValPheTyrTy 217530 : GCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcgttttttatta : 217586 164 : rThrTyrLeuProLeuThrThrAlaLysAlaLeuSerThrGlu<->AsnValThrIle : 181 ! !:!!|||:!!!:!..!!.!!:! !|||||| !.!. |||:!!|||.!! rIleAlaIleProIleSerValGlyArgIleLeuSerGluAsnGlyAsnLeuThrPhe 217587 : catCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAACCTTACCTTT : 217643 182 : ArgIleLeuProTyrArgCysAsnPheIleLeuPheAspProTyrAlaProLeuPheP : 201 ! ! ||| !!:!! !! !!.. !:!!.!!||| !! ! ! !!! ! IleProLeuValPheProPheThrLysTyrIleIleAspThrArgTyrThrProThrA 217644 : ATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATACTCGTTACACTCCTACGA : 217703 202 : heAspIleIleTyrPheLeuGlnCysLeuSerAlaAlaPheMetPheThrLeuThrSe : 220 !!!:|||:!:!:!|||||||||! :!!:!!!.!|||!!.||| ! !:!!||||| snGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHisGlyIleThrSe 217704 : ACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCACGGAATCACGTC : 217760 221 : rGlyValCysSerLeuAlaAlaAsnPheIleIleHisAlaCysGlyGlnCysGlnIle : 239 |!.!!.!||||||||||||||| !||| :!!||||||||||||||| !:!!:!: rAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGlyGlnIleGluVal 217761 : GGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGCCAGATCGAGGTG : 217817 240 : IleGlyLeuLeuLeuGluAsnLeuValAspGlyArgGlyAsnThrSerThrThrLeuG : 259 :!: ! !! !|||:!!:!!|||:!!|||||||||!.!:!!! !||| !|||:!!! LeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgAlaAspMetSerAspThrValA 217818 : TTGATGAACTGGCTGCAACATTTAATCGACGGTAGAGCGGATATGAGCGATACTGTGG : 217877 260 : luLysArgIleAlaValValIleValArgHisLeuHisLeuLeu{Ar} >>>> Tar : 274 !: ||||||||| !:!!:!! !!:!|||:!!!..:!!|||{!:} spGlyArgIleAlaSerIleValSerGlnHisValArgIleLeu{Ly}++ 217878 : ATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTA{AA}gt........ : 217926 275 : get Intron 1 >>>> {g}PheValThrArgValGluAspValLeuAsnGluVal : 286 1229 bp {!}|||:::|||! !..!||| ..!|||.!.:!!:!! ++{s}PheLeuThrLeuThrGluArgThrLeuGlnGlnIle 217927 : .................ag{a}tttttgaCGCTCACAGAGAGAACCCTCCAGCAAATC : 219187 287 : CysLeuValGluPheLeuGlyCysThrLeuAsnIleCysLeuLeuGlyTyrTyrPheI : 306 ! !!!!!.!||||||||||||||||||:!!:!!|||||||||:!!|||||||||.!!| SerPheAlaGluPheLeuGlyCysThrMetAspIleCysLeuValGlyTyrTyrIleI 219188 : TCTTTCGCTGAATTTCTAGGATGCACCATGGACATATGTCTCGTTGGATATTACATTA : 219247 307 : leThr >>>> Target Intron 2 >>>> GlyLeuGluThrAlaAspThrAla : 315 ||..! 76 bp ! !! !:!!:!! !|||..!.!! leVal++ ++GluTrpLysSerAsnAspValThr 219248 : TCGTGgt.........................agGAATGGAAATCGAATGATGTAACG : 219350 316 : ArgPheValThrPheAlaLeuLeuPheIleSerPheThrPheAsnIlePheIlePheC : 335 !!! ||||||!:! !:!!|||.!!||||||.!.|||||||||||||||||||||| SerAlaValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePheC 219351 : AGTGCAGTGACATACATCATTCTACTTATATCCCTcactttcaacattttcatatttt : 219410 336 : ysTyrIleGlyGlnLeuLeuThrAsnHis >>>> Target Intron 3 >>>> : 345 |||||||||||:!!:!!:!!.!!.!.!!. 73 bp ysTyrIleGlyGluIleValAlaGluGln++ ++ 219411 : gctaCATAGGAGAGATCGTTGCTGAACAggt.........................ag : 219511 346 : CysHisGlnIleGlyGluIleSerTyrThrIleAspTrpTyrArgIleProGlyAlaG : 364 |||...:::|||||||||:::||||||! !|||!!:|||||||||:!: !!||| !: CysArgLysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysL 219512 : TGtaggaaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGA : 219570 365 : lnAlaArgPheLeuIleLeuLeuIleAlaIleAlaAsnArgProValThrIleThrAl : 383 !! !! !!:: !:!!||| !||||||!!::!!||| ! !!:!!! !:!:||||| ysLysLeuTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAl 219571 : AAAAGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGC : 219627 384 : aGlyLysIleValGlnLeuSerPheProCysPheArgAspVal : 397 ||||!!.!!:|||:!!||||||.!! ! !|||! !|||||| aGlyAsnMetValGluLeuSerIleSerThrPheThrAspVal 219628 : CGGAAATATGGTCGAATTGTCTATCAGCACTTTTACCGACGTG : 219671 vulgar: gi|528747938|gb|AGS43064.1| 8 397 . KQ414889.1 217126 219671 + 709 M 59 177 G 1 0 M 109 327 G 0 3 M 96 288 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 5 0 2 I 0 72 3 0 2 M 37 111 5 0 2 I 0 69 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217127 219671 709 + . gene_id 3 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217127 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217127 217923 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219253 219254 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219253 219328 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 219327 219328 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219329 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219329 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219440 219441 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 219440 219512 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 219511 219512 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219513 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217127 219671 709 + . alignment_id 3 ; Query gi|528747938|gb|AGS43064.1| ; Align 217127 9 177 ; Align 217304 69 327 ; Align 217634 178 288 ; Align 219154 275 99 ; Align 219329 308 111 ; Align 219513 345 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 685 Query range: 7 -> 413 Target range: 208161 -> 212084 8 : AlaLysIleLysSerAspIleProAsnLysAsnTyrAspThrAspValGluTyrAlaI : 27 |||! !!!:!:!..! .!!! !|||!:!|||||| ! !.!|||:!!...!:! !: AlaThrMetArgGlnIlePheLeuAsnArgAsnTyrLysAsnAspLeuSerPheAsnV 208162 : GCAACGATGAGACAAATATTCCTCAACAGAAACTACAAGAACGATCTGAGCTTCAACG : 208219 28 : leLysLeuAsnArgTrpLeuLeuLysProIleGlyValTrpProLeuGluLeuSerSe : 46 !!:::|||||| !||| !|||||| !|||||| !|||||| !...:!!..! ! alArgLeuAsnValTrpThrLeuLysIleIleGlySerTrpProArgSerIleAspAr 208220 : TTCGTCTGAACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCG : 208276 47 : rSerArgThrGluArgIleValThrIleThrThrAlaValThrCysCysLeuLeuMet : 65 !||| !! !|||!.!! ! ! !||| ! ! !||| ! !! !! !|||:!: gSerTrpLeuGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeu 208277 : TTCCTGGTTAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTC : 208333 66 : SerPheValLeuThrIleProCysCysIleGluMetPheSerSerGlnLysAspPheL : 85 .!!|||:!!:!! |||||| ! !!!!: !.!! ! ! :!!|||||| GlyPheIleVal---IleProThrGlyMetPheAlaIleLeuValValGluAspPheT 208334 : GGTTTCATCGTG---ATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTT : 208390 86 : ysSerArgLeuGluMetLeuGlyProSerSerPheCysValMetAlaValIleLysPh : 104 ! ..!!:!|||:!!!!:! !.!! !! !||||||! !:!!|||||| !!! |||!: yrAspGlnLeuLysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTy 208391 : ACGACCAATTAAAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTA : 208447 105 : ePhePhePheValIleArgGlyLysGluIleArgPheCysIleAspSerValValThr : 123 ! ! .!!.!...!:!!|||! ! !!:|||||| |||:!!!!:! !|||! !.!! rValIleMetThrValArgGluGlyAspIleArgLysCysValGluTyrValGluAla 208448 : CGTGATCATGACTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCT : 208504 124 : AspTrpArgAsnValAspValProGluGluArgAsnIleMetLeuArgLysAlaLysS : 143 |||||||||||||||!!: ! !|||!!:|||!!.||||||||| !!!.|||!..! AspTrpArgAsnValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerP 208505 : GATTGGAGAAACGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTT : 208564 144 : erAlaArgPheLeuThrThrValCysAlaLeuPheMetTyrTyrGlyGlyIlePheTy : 162 !|||||| |||! !..!:!!|||!.! !||||||||| ||| |||||||| heAlaArgLysLeuIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTy 208565 : TCGCCAGGAAACTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttcta : 208621 163 : rThrThrTyrLeuProLeuThrThrAlaLysAlaLeuSerThr<->GluAsnValThr : 180 | ! !|||||||||||| !! !|||!.!:!!..! ! ! |||:!!||| rTyrIleAlaLeuProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThr 208622 : ttacaTCGCTTTGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACG : 208678 181 : IleArgIleLeuProTyrArgCysAsnPheIleLeuPheAspProTyrAlaProLeuP : 200 !|||! ||| !|||! ! ! ! .!!:!!.!.||| ! ! !! ! TyrArgArgLeuValTyrProValProLysPheIleLeuAspValArgTyrSerProV 208679 : TACAGAAGGCTGGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTG : 208738 201 : hePheAspIleIleTyrPheLeuGlnCysLeuSerAlaAlaPheMetPheThrLeuTh : 219 ! !!!:|||.!!||| :!!|||! ||||||!.! ! !! !!.!:!!|| alAsnGluIlePheTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleTh 208739 : TGAATGAGATTTTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCAC : 208795 220 : rSerGlyValCysSerLeuAlaAlaAsnPheIleIleHisAlaCysGlyGlnCysGln : 238 | !|||!.!|||.!!||||||||| .!! !!:||||||||||||||| ||| rValGlyAlaCysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGln 208796 : GGTTGGGGCTTGCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAG : 208852 239 : IleIleGlyLeuLeuLeuGluAsnLeuValAspGlyArgGlyAsnThrSerThrThrL : 258 |||:!: !! !! !:!!|||!!.|||||||||||||||! !:!! !..!! !!.!| IleLeuMetSerTrpMetGluLysLeuValAspGlyArgGluAspGluGluLysAsnL 208853 : ATTTTGATGTCCTGGATGGAGAAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATT : 208912 259 : euGluLysArgIleAlaValValIleValArgHisLeuHisLeuLeu{Ar} >>>> : 274 ||!!::!!|||:!:||| !:!!:!:! !!:!|||:!!!..:!!:!!{!.} euAspGlnArgLeuAlaAsnIleValGluGlnHisValArgValIle{As}++ 208913 : TGGATCAGAGGTTGGCTAATATCGTGGAGCAGCATGTTCGAGTGATC{AA}gt..... : 208964 275 : Target Intron 1 >>>> {g}PheValThrArgValGluAspValLeuAsnGlu : 285 1536 bp {!}|||:!!.!!! !..!|||:!!:!!|||:!!||| ++{n}PheIleAlaLeuThrGluAsnLeuLeuHisGlu 208965 : ....................ag{T}TTTATAGCTCTGACAGAGAACCTCCTGCACGAG : 210529 286 : ValCysLeuValGluPheLeuGlyCysThrLeuAsnIleCysLeuLeuGlyTyrTyrP : 305 :!!! |||:!!|||.!.:!!|||||||||||||||!!:|||!!!|||||||||||| IleSerLeuIleGluMetValGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrT 210530 : ATATCATTGATAGAAATGGTGGGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACA : 210589 306 : heIleThr >>>> Target Intron 2 >>>> GlyLeuGluThrAlaAspThr : 314 !!:! ! 66 bp ! !! !!!::!! !||| !! hrMetIle++ ++GluTrpAspSerLysAspPro 210590 : CGATGATTgt.........................agGAATGGGACTCTAAAGACCCT : 210682 315 : AlaArgPheValThrPheAlaLeuLeuPheIleSerPheThrPheAsnIlePheIleP : 334 !!!! !:!!|||!:! !:!!|||.!!! !||| !!||||||||||||||||||| IleSerSerLeuThrTyrIleValLeuLeuThrSerValThrPheAsnIlePheIleP 210683 : ATCAGCAGTCTGACGTACATAGTACTCCTCACTTCTGTCACGTTTAACATCTTCATAT : 210742 335 : heCysTyrIleGlyGlnLeuLeuThrAsnHis >>>> Target Intron 3 >>> : 345 ||||||||||||||:!!:!!|||.!!.!.!!. 999 bp heCysTyrIleGlyGluValLeuAlaGluGln++ 210743 : TCTGTTACATCGGTGAAGTGTTGGCTGAACAggt........................ : 210777 346 : > CysHisGlnIleGlyGluIleSerTyrThrIleAspTrpTyrArgIleProGlyA : 363 :!!:!!||||||! ||||||! !|||||||||||||||!!:|||||| ++ThrValLysValGlyGluLysSerTyrMetIleAspTrpTyrArgMetProGlyL 210778 : .agACAGTAAAAGTTGGAGAAAAGTCTTACATGATCGACTGGTATCGAATGCCAGGAA : 211828 364 : laGlnAlaArgPheLeuIleLeuLeuIleAlaIleAlaAsnArgProValThrIleTh : 382 !:!!!.! ! !!:!! !|||:!!|||:!!!!::!!:!! ! !!..!! !||||| ysLysGlyLeuValValProLeuMetIleSerMetSerHisSerThrThrLysIleTh 211829 : AGAAAGGTTTGGTCGTACCCTTGATGATCTCCATGTCACATTCGACCACCAAAATCAC : 211885 383 : rAlaGlyLysIleValGlnLeuSerPheProCysPheArgAsp >>>> Target I : 397 |||||||!!.:!!:!! ||||||.!! ! !!||| !!||| 104 rAlaGlyAsnLeuIleValLeuSerIleSerSerPheGlyAsp++ 211886 : CGCTGGCAATCTCATCGTTCTTTCAATCAGTAGTTTCGGTGACgt............. : 211932 398 : ntron 4 >>>> ValLeuLysAlaAlaLeuAlaTyrLeuAsnMetLeuArgLysVa : 411 bp |||:!!|||.!!:!!:!!.!!||||||||||||||||||! ! ! ++ValIleLysThrSerValThrTyrLeuAsnMetLeuArgThrPh 211933 : ............agGTTATCAAGACTTCGGTAACATACTTGAACATGCTACGAACATT : 212076 412 : lThrThr : 413 !|||||| eThrThr 212077 : CACAACC : 212084 vulgar: gi|528747938|gb|AGS43064.1| 7 413 . KQ414889.1 208161 212084 + 685 M 62 186 G 1 0 M 106 318 G 0 3 M 97 291 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 5 0 2 I 0 62 3 0 2 M 37 111 5 0 2 I 0 995 3 0 2 M 52 156 5 0 2 I 0 100 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208162 212084 685 + . gene_id 4 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208162 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208162 208961 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210598 210599 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 210598 210663 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 210662 210663 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210664 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210664 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 210775 210776 . + . intron_id 3 ; splice_site "gt" KQ414889.1 exonerate:protein2genome:local intron 210775 211773 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 211772 211773 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 211774 211929 . + . KQ414889.1 exonerate:protein2genome:local exon 211774 211929 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 211930 211931 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 211930 212033 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 212032 212033 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 212034 212084 . + . KQ414889.1 exonerate:protein2genome:local exon 212034 212084 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208162 212084 685 + . alignment_id 4 ; Query gi|528747938|gb|AGS43064.1| ; Align 208162 8 186 ; Align 208348 71 318 ; Align 208669 177 291 ; Align 210499 275 99 ; Align 210664 308 111 ; Align 211774 345 156 ; Align 212034 397 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 529 Query range: 3 -> 344 Target range: 226867 -> 228358 4 : LysArgGlyTrpAlaLysIleLysSerAspIleProAsnLysAsnTyrAspThrAspV : 23 |||!:! !!! !|||!!.:!! !||| ! !!.!.!!.:!!|||.!. ! !!: LysGlnArgSerAlaAsnLeuAlaSerLeuAlaThrGluAsnAspTyrGlnGluTyrL 226868 : AAACAGCGATCGGCGAACCTCGCGTCTCTCGCGACAGAGAACGACTATCAGGAATACT : 226925 24 : alGluTyrAlaIleLysLeuAsnArgTrpLeuLeuLysProIleGlyValTrpProLe : 42 !!.!. ::!|||:!!||||||||||||||||||||||||:!!|||:!!||||||! euAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSe 226926 : TGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTC : 226982 43 : uGluLeuSerSerSerArgThrGluArgIleValThrIleThrThrAlaValThrCys : 61 !..!! !!.!|||||||||! !! !||| ! !!:!! !! !!.! !! !||| rSerArgLysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCys 226983 : GTCGCGCAAAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGT : 227039 62 : CysLeuLeuMetSerPheValLeuThrIleProCysCysIleGluMetPheSerSerG : 81 ! ! !||||||||||||! !||| :!! !! !! !!:!: ! :!! !! !..! TyrAlaLeuMetSerPheGluLeu---ValSerSerGlyLeuTyrValValLeuGluV 227040 : TACGCGCTGATGAGCTTCGAGTTG---GTCTCGAGCGGCTTGTACGTGGTTCTAGAGG : 227096 82 : lnLysAspPheLysSerArgLeuGluMetLeuGlyProSerSerPheCysValMetAl : 100 !|||! ! ! ! !:!! !|||:!!|||:!!||||||! !||||||! !!.!|||:! alLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSe 227097 : TGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTC : 227153 101 : aValIleLysPhePhePhePheValIleArgGlyLysGluIleArgPheCysIleAsp : 119 !:!!:!!|||!:!! !.!.!!...!.!!!.!! ! ! !!:|||! ! |||:!!!!: rLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGlu 227154 : CCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAA : 227210 120 : SerValValThrAspTrpArgAsnValAspValProGluGluArgAsnIleMetLeuA : 139 !!:!! ! !||||||!:!|||:!! !! !|||!!:||||||:!:|||:!!! ArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValT 227211 : CGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGA : 227270 140 : rgLysAlaLysSerAlaArgPheLeuThrThrValCysAlaLeuPheMetTyrTyrGl : 158 ! ! ||| ! ! !!.!||| |||! !|||:!!|||.!!!!!|||:!:!:! .. hrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSe 227271 : CGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtag : 227327 159 : yGlyIlePheTyrThrThrTyrLeuProLeuThrThrAlaLysAlaLeuSerThrGlu : 177 . :::|||::: ! ! !:!!|||:!!!.!.!!!.!!..!.! !!!! !!!: rPheValPhePheTyrIleValValProIleAsnAlaGlySerValAlaThrGluAsp 227328 : tttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGAC : 227384 178 : <->AsnValThrIleArgIleLeuProTyrArgCysAsnPheIleLeuPheAspProT : 196 ||| !!:! !! ! :!!|||!:!! !! ! |||:!! !||| ! GlyAsnHisSerTyrIleGlnMetProPheProPheProLysIleIleAlaAspValA 227385 : GGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTC : 227444 197 : yrAlaProLeuPhePheAspIleIleTyrPheLeuGlnCysLeuSerAlaAlaPheMe : 215 ! ! !! !||| !!!:|||.!!!:!! :!!|||! !:!!!!!!.! ! ! :! rgTyrSerProPheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLe 227445 : GTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTT : 227501 216 : tPheThrLeuThrSerGlyValCysSerLeuAlaAlaAsnPheIleIleHisAlaCys : 234 ! ! !:!!||||||!.!!.!||||||:!!|||||| .!! :!!||||||||| uHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCys 227502 : GCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGC : 227558 235 : GlyGlnCysGlnIleIleGlyLeuLeuLeuGluAsnLeuValAspGlyArgGlyAsnT : 254 |||||| :!!:!::!:! !! !! !|||! !:!!|||:!!|||||||||!.!:!!! GlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGlyArgAlaAspM 227559 : GGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGCAGAGCGGATA : 227618 255 : hrSerThrThrLeuGluLysArgIleAlaValValIleValArgHisLeuHisLeuLe : 273 !|||! !||||||!!: ! ||||||||| !:!!:!!..!!.!|||:!!!..:!!|| etSerLysThrLeuAspAspArgIleAlaSerIleValThrHisHisValArgIleLe 227619 : TGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACCACGTTCGAATATT : 227675 274 : u{Ar} >>>> Target Intron 1 >>>> {g}PheValThrArgValGluAsp : 281 |{!.} 396 bp {!}|||:!!.!!! !:!!||| ! u{As}++ ++{n}PheLeuAlaLeuIleGluLys 227676 : G{AA}gt.........................ag{C}TTTCTGGCCCTCATAGAGAAA : 228095 282 : ValLeuAsnGluValCysLeuValGluPheLeuGlyCysThrLeuAsnIleCysLeuL : 301 ..!:!!.!.:!!:!!..!!!!|||||||||||||||||||||:!!! !:!:||||||: ThrMetGlnGlnIleAlaPheValGluPheLeuGlyCysThrIleIleLeuCysLeuI 228096 : ACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGTACAATAATTCTGTGCCTCA : 228155 302 : euGlyTyrTyrPheIleThr >>>> Target Intron 2 >>>> GlyLeuGlu : 310 !!! !||||||.!!|||||| 72 bp ! !! !.!. leGluTyrTyrIleIleThr++ ++GluTrpAsn 228156 : TCGAGTATTACATCATAACGgt.........................agGAATGGAAT : 228254 311 : ThrAlaAspThrAlaArgPheValThrPheAlaLeuLeuPheIleSerPheThrPheA : 330 !! !!!: !.!! ! !||||||!:!:!! !|||.!!:!!||||||||||||| ProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerPheThrPheA 228255 : CCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCTTTAccttca : 228314 331 : snIlePheIlePheCysTyrIleGlyGlnLeuLeuThrAsnHis : 344 ||||||||||||||||||||||||||:!!:!!:!!.!!.!.||| snIlePheIlePheCysTyrIleGlyGluIleValAlaGluHis 228315 : atattttcatattttgttaTATAGGAGAAATTGTTGCCGAACAC : 228358 vulgar: gi|528747938|gb|AGS43064.1| 3 344 . KQ414889.1 226867 228358 + 529 M 66 198 G 1 0 M 107 321 G 0 3 M 96 288 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226868 228358 529 + . gene_id 5 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226868 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226868 227679 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228358 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228358 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226868 228358 529 + . alignment_id 5 ; Query gi|528747938|gb|AGS43064.1| ; Align 226868 4 198 ; Align 227066 71 321 ; Align 227390 178 288 ; Align 228077 275 99 ; Align 228248 308 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 457 Query range: 17 -> 276 Target range: 221357 -> 222134 18 : AsnTyrAspThrAspValGluTyrAlaIleLysLeuAsnArgTrpLeuLeuLysProI : 37 :!!||| ! |||:!!|||:!!! ::!:!::!!|||!:!||||||:!!|||||||||| AspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProI 221358 : GATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGA : 221415 38 : leGlyValTrpProLeuGluLeuSerSerSerArgThrGluArgIleValThrIleTh : 56 |||||||||||||| !..! !!:!! !|||! !..!|||||| !:!! ! leGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLe 221416 : TCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 57 : rThrAlaValThrCysCysLeuLeuMetSerPheValLeuThrIleProCysCysIle : 75 !! ! !|||..!|||! ! !|||!!:!!!|||:!!||| :!!|||||| !!:!! uIleAsnValValCysTyrSerLeuIleThrPheLeuLeu---ValProCysSerLeu 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTG---GTACCTTGCAGCCTT : 221526 76 : GluMetPheSerSerGlnLysAspPheLysSerArgLeuGluMetLeuGlyProSerS : 95 ! :!!.!! !..! !:!!||| !! ! !:!|||:!!:!!:!!|||||||||! !| TyrValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuS 221527 : TACGTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGA : 221586 96 : erPheCysValMetAlaValIleLysPhePhePhePheValIleArgGlyLysGluIl : 114 ||||||||||||||||| !!:!!|||!:! !.!.!!.:!!:!! !! !!!.!!:|| erPheCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIl 221587 : GTTTCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACAT : 221643 115 : eArgPheCysIleAspSerValValThrAspTrpArgAsnValAspValProGluGlu : 133 |||| ||||||!!: !!:!!! ! !||||||!:!|||:!! ! ! !!:!!!!: eArgGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAsp 221644 : CCGTGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGAT : 221700 134 : ArgAsnIleMetLeuArgLysAlaLysSerAlaArgPheLeuThrThrValCysAlaL : 153 !:!:!!||||||:!!..!!!.|||! ! !!.!||| |||! !! !:!!|||.!!! LysAspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrP 221701 : AAGGATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACAT : 221760 154 : euPheMetTyrTyrGlyGlyIlePheTyrThrThrTyrLeuProLeuThrThrAlaLy : 172 !!||||||||| !||| :::|||||| ! !:!!|||!!!!:!..!!.!|| hePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLy 221761 : TTTTCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAA : 221817 173 : sAlaLeuSerThrGlu<->AsnValThrIleArgIleLeuProTyrArgCysAsnPhe : 190 | !! !:!! !!!: |||||||||... !:!! !!:!! !! !::: sIleProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArg 221818 : AATTCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGA : 221874 191 : IleLeuPheAspProTyrAlaProLeuPhePheAspIleIleTyrPheLeuGlnCysL : 210 .!!:!! !!||| !! ! !! ! ! !!!:|||:!:!:!! |||||| !: PheIleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleM 221875 : TTTATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTA : 221934 211 : euSerAlaAlaPheMetPheThrLeuThrSerGlyValCysSerLeuAlaAlaAsnPh : 229 !!:!!!.!|||!!.||| !!:!:!!||||||!.!!.!|||||||||!.!|||! || etAlaGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPh 221935 : TGGCGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTT : 221991 230 : eIleIleHisAlaCysGlyGlnCysGlnIleIleGlyLeuLeuLeuGluAsnLeuVal : 248 | !:!:||||||||||||||| |||:!::!: ! !! !|||:!!:!!|||:!! eAlaValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIle 221992 : TGCTGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATC : 222048 249 : AspGlyArgGlyAsnThrSerThrThrLeuGluLysArgIleAlaValValIleValA : 268 :!!||||||!.!:!!! !!!!!.!!.!:!!!!:!:!||||||||| !:!!:!: !! AsnGlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnG 222049 : AACGGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATC : 222108 269 : rgHisLeuHisLeuLeuArgPheVal : 276 :!|||:!!!..:!!|||!:!!:!||| lnHisValArgIleLeuGlnTyrVal 222109 : AACACGTTCGAATATTGCAGTATGTA : 222134 vulgar: gi|528747938|gb|AGS43064.1| 17 276 . KQ414889.1 221357 222134 + 457 M 52 156 G 1 0 M 107 321 G 0 3 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221358 222134 457 + . gene_id 6 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221358 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221358 222134 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221358 222134 457 + . alignment_id 6 ; Query gi|528747938|gb|AGS43064.1| ; Align 221358 18 156 ; Align 221514 71 321 ; Align 221838 178 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 453 Query range: 2 -> 307 Target range: 212806 -> 214561 3 : HisLysArgGlyTrpAlaLysIleLysSerAspIleProAsnLysAsnTyrAspThrA : 22 !!.|||! !||| ! ! ! |||! !.!.:!! !:!! !.!|||!!:! ! GlnLysProGlyGlyLysAspGluLysLeuGlnValGluAspCysThrTyrGluLysA 212807 : CAAAAACCGGGAGGAAAAGATGAGAAATTGCAGGTCGAAGACTGTACCTACGAGAAAC : 212864 23 : spValGluTyrAlaIleLysLeuAsnArgTrpLeuLeuLysProIleGlyValTrpPr : 41 |||... :::||| !! !|||||||||||||||||||||! |||:!!||||| rgValAsnLeuSerIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpPr 212865 : GtgtaaatttaagtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCC : 212921 42 : oLeuGluLeuSerSerSerArgThrGluArgIleValThrIleThrThrAlaValThr : 60 | !:!!! !! ! !|||! !! !|||!:!! !:!!.!! ! !..! !..!..! oAspLysSerTyrValSerProIleGluLysAsnIleAlaArgLeuValAsnThrVal 212922 : CGACAAGTCCTACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTT : 212978 61 : CysCysLeuLeuMetSerPheValLeuThrIleProCysCysIleGluMetPheSerS : 80 |||! ! !|||!!:.!!!:! |||..!||||||||| !!:!: ! :!!||| !. CysTyrGlyLeuIleGlyTyr---LeuValIleProCysSerLeuTyrValPheLeuA 212979 : TGTTACGGTTTGATCGGTTAC---CTTGTAATACCGTGCAGTTTGTACGTGTTCCTCG : 213035 81 : erGlnLysAspPheLysSerArgLeuGluMetLeuGlyProSerSerPheCysValMe : 99 .! !::::::... ......:!!|||:!!!!!||| !! !:!!||||||||| spValGluAsnIlePheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAl 213036 : ACGTAgagaatatatttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGC : 213092 100 : tAlaValIleLysPhePhePhePheValIleArgGlyLysGluIleArgPheCysIle : 118 |||:!! |||!:! !! !!.:!!:!!!.!||| ! !!:|||||| |||:!! aAlaLeuTrpLysTyrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysVal 213093 : TGCGCTGTGGAAGTATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTC : 213149 119 : AspSerValValThrAspTrpArgAsnValAspValProGluGluArgAsnIleMetL : 138 !!: !:!! ! !||||||!:!|||:!! ! !|||!!:!:!.!.|||||| GluHisMetLysTyrAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetA 213150 : GAGCATATGAAATATGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGG : 213209 139 : euArgLysAlaLysSerAlaArgPheLeuThrThrValCysAlaLeuPheMetTyrTy : 157 ! !!!.|||!..! !!.!!:! :!!..!|||:!!||||||!!!||||||||| laLeuAsnAlaSerPheGlyLysArgIleValThrIleCysAlaPhePheMetTyrTh 213210 : CGTTGAACGCGAGCTTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACAC : 213266 158 : rGlyGlyIlePheTyrThrThrTyrLeuProLeuThrThrAlaLysAlaLeuSerThr : 176 ||| !! |||||| ! ! !:!!|||:!!!:!.!!! !||| !:!!:!! ! rGlyPheThrPheTyrPheLeuValValProIleSerAlaAspLysMetValAlaGlu 213267 : AGGTTTCACGTTTTATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAG : 213323 177 : Glu<->AsnValThrIleArgIleLeuProTyrArgCysAsnPheIleLeuPheAspP : 195 !!: |||||||||.!!||| !:!! ! !! ! !::: .!!:!! !!||| AspLeuAsnValThrPheArgGlnMetValValProValSerArgPheIleValAspV 213324 : GATCTTAACGTGACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATG : 213383 196 : roTyrAlaProLeuPhePheAspIleIleTyrPheLeuGlnCysLeuSerAlaAlaPh : 214 ! ! !! ! ! !!!:|||.!!!:!!!.:!!||| !:!!:!!!.!!.!.! alArgTyrSerProValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLe 213384 : TTCGATACAGTCCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACT : 213440 215 : eMetPheThrLeuThrSerGlyValCysSerLeuAlaAlaAsnPheIleIleHisAla : 233 .!!: !.!!:!!.!! !! !!.!||||||||||||||| ||| :!!|||||| uIleHisAlaIleAlaValValAlaCysSerLeuAlaAlaValPheAlaValHisAla 213441 : GATTCATGCTATTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCT : 213497 234 : CysGlyGlnCysGlnIleIleGlyLeuLeuLeuGluAsnLeuValAspGlyArgGlyA : 253 ||||||||| |||:!: ! !! !||||||:!!|||:!!|||||||||! !: CysGlyGlnMetGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGlyArgGluA 213498 : TGCGGACAGATGGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGTAGAGAGG : 213557 254 : snThrSerThrThrLeuGluLysArgIleAlaValValIleValArgHisLeuHisLe : 272 !!! !|||! !!.!:!!!!: ! ||||||||||||:!!:!: !!:!|||:!!!..:! spMetSerLysAsnValAspAspArgIleAlaValIleValAsnGlnHisValArgIl 213558 : ATATGAGCAAGAATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGAT : 213614 273 : uLeuArgPheValThr >>>> Target Intron 1 >>>> ArgValGluAspV : 282 !|||!:!!::||| ! 840 bp ! !|||||| ! ! eLeuLysTrpValGlu-+ ++LeuValGluLysA 213615 : ACTGAAGTGGGTGGAAtt.........................agCTCGTGGAGAAAG : 214484 283 : alLeuAsnGluValCysLeuValGluPheLeuGlyCysThrLeuAsnIleCysLeuLe : 301 .!|||...:!!|||! !!!!!.!|||!!.|||! !||||||:!!|||:!!||||||:! laLeuArgGlnValSerPheAlaGluLeuLeuValCysThrValAsnLeuCysLeuVa 214485 : CACTTCGGCAAGTATCTTTCGCTGAATTATTAGTATGCACGGTGAATCTCTGTCTCGT : 214541 302 : uGlyTyrTyrPheIleThr : 307 !|||||||||.!.|||||| lGlyTyrTyrIleIleThr 214542 : TGGATATTACATAATAACG : 214561 vulgar: gi|528747938|gb|AGS43064.1| 2 307 . KQ414889.1 212806 214561 + 453 M 65 195 G 1 0 M 109 327 G 0 3 M 100 300 5 0 2 I 0 836 3 0 2 M 30 90 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212807 214561 453 + . gene_id 7 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 212807 213631 . + . KQ414889.1 exonerate:protein2genome:local exon 212807 213631 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 213632 213633 . + . intron_id 1 ; splice_site "TT" KQ414889.1 exonerate:protein2genome:local intron 213632 214471 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 214470 214471 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 214472 214561 . + . KQ414889.1 exonerate:protein2genome:local exon 214472 214561 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212807 214561 453 + . alignment_id 7 ; Query gi|528747938|gb|AGS43064.1| ; Align 212807 3 195 ; Align 213002 69 327 ; Align 213332 178 300 ; Align 214472 278 90 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 421 Query range: 13 -> 306 Target range: 256619 -> 257577 14 : IleProAsnLysAsnTyrAspThrAspValGluTyrAlaIleLysLeuAsnArgTrpL : 33 :!: !!!.! !|||!:! ! !:! !! !!!:|||::!:!!:!!||||||||||||! ValValLysThrAsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpP 256620 : GTGGTAAAGACGAATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGT : 256677 34 : euLeuLysProIleGlyValTrpProLeuGluLeuSerSerSerArgThrGluArgIl : 52 !!|||||||||||||||!.!||||||! !..!! !|||!!!!!!! ! !||||||! heLeuLysProIleGlyAlaTrpProProSerSerSerThrThrThrLeuGluArgAs 256678 : TCCTGAAACCTATAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCGAAA : 256734 53 : eValThrIleThrThrAlaValThrCysCysLeuLeuMetSerPheValLeuThrIle : 71 !|||:!!|||..! ! !:!!..!|||! ! !! !!!:! !|||..!||| ||| nValSerIleValLeuAsnIleValCysTyrGlySerIleLeuPheThrLeu---Ile 256735 : CGTTTCGATCGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTG---ATA : 256788 72 : ProCysCysIleGluMetPheSerSerGlnLysAspPheLysSerArgLeuGluMetL : 91 ||||||! :!!.!.:!:||| !..!.!. ! ..!||| ! ::::::::: . ProCysLeuLeuHisValPheLeuAspAspAspSerPheTyrMetLysValLysAsnP 256789 : CCCTGTTTGCTCCATGTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatt : 256848 92 : euGlyProSerSerPheCysValMetAlaValIleLysPhePhePhePheValIleAr : 110 ..||||||! !||| !!! :!!!!:::! ! !!!.!:! !!..!.:!!:!!!: heGlyProMetSerHisTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGl 256849 : tcggtCCTATGAGCCATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACA : 256905 111 : gGlyLysGluIleArgPheCysIleAspSerValValThrAspTrpArgAsnValAsp : 129 !||||||!!:||||||!:!|||:!!!!: !:!!! !||||||||||||! ||| nGlyLysAspIleArgTyrCysValGluHisIleGluThrAspTrpArgMetValArg 256906 : AGGAAAAGACATACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGG : 256962 130 : ValProGluGluArgAsnIleMetLeuArgLysAlaLysSerAlaArgPheLeuThrT : 149 ! !:!!!!:!:!.!.:!:|||:!!!:!!!.|||!:!! !!.!|||!:!:!!.!!| ArgGluLysAspGlnGlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaT 256963 : AGGGAGAAGGATCAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCA : 257022 150 : hrValCysAlaLeuPheMetTyrTyrGlyGlyIle<->PheTyrThrThrTyrLeuPr : 167 || !!|||||| !.!!||| ! !||| ... |||:::..!:!!! !! hrPheCysAlaAlaIleMetGlnSerGlyValPheCysPhePheValSerSerAlaLe 257023 : CATTTTGCGCAGCTATCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCT : 257079 168 : oLeuThrThrAlaLysAlaLeuSerThrGluAsnValThrIleArgIleLeuProTyr : 186 ! !||| ! !! !:!!.!!!.!|||!....!! !:!:|||:!:|||||| ! uAsnThrGluIleIleHisValGlyAsnGluThrThrIleValArgValLeuProVal 257080 : GAACACGGAGATAATTCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTT : 257136 187 : ArgCysAsnPheIleLeuPheAspProTyrAlaProLeuPhePheAspIleIleTyrP : 206 ! ! !! ! |||!!.:!! ! !! ! !! ! !!!:|||:!: !| ThrValTyrLysLysLeuLeuAsnValAspGlnSerProThrAsnGluIleValValP 257137 : ACCGTGTACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCT : 257196 207 : heLeuGlnCysLeuSerAlaAlaPheMetPheThrLeuThrSerGlyValCysSerLe : 225 ||:!!||| !! !|||:!! !.!. ! !||| !||| !.!!:!!! !||||| heMetGlnThrTrpSerSerIleIleAlaThrThrSerThrValSerIlePheSerLe 257197 : TTATGCAAACTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCT : 257253 226 : uAlaAlaAsnPheIleIleHisAlaCysGlyGlnCysGlnIleIle<->GlyLeuLeu : 243 ||||||| !||| !! !||||||! !||||||! :!::!! ..!! !:!! uAlaAlaValPheAlaThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIle 257254 : CGCGGCTGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATA : 257310 244 : LeuGluAsnLeuValAspGlyArgGlyAsnThrSerThrThrLeuGluLysArgIleA : 263 !||| !:!! !!!:..!|||..!... ...||| |||!:!|||! ThrGluPheValAsnGluSerArgAsnArgGluLysThrPheProPheLysGlnIleG 257311 : ACAGAGTTTGTGAATGAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAG : 257370 264 : laValValIleValArgHisLeuHisLeuLeu{Ar} >>>> Target Intron 1 : 274 .!|||:!!:!:! !!.!||||||...:!!|||{!!} 76 bp lyValIleValGluHisHisLeuArgValLeu{Se}++ 257371 : GCGTGATTGTGGAGCATCATTTAAGAGTGCTG{AG}gt.................... : 257407 275 : >>>> {g}PheValThrArgValGluAspValLeuAsnGluValCysLeuValGlu : 290 {!}|||:!!:!! !:!!|||!!:|||:!!|||..!:!!|||!!!:!!||| ++{r}PheIleSerTyrIleGluGluValMetAsnArgIleCysPheLeuGlu 257408 : .....ag{T}TTCATATCATATATCGAGGAAGTGATGAACCGAATATGTTTTTTAGAG : 257527 291 : PheLeuGlyCysThrLeuAsnIleCysLeuLeuGlyTyrTyrPheIle : 306 !!.!!! !!||||||||| !||||||:!!||||||||||||.!!:!! LeuPheArgCysThrLeuAlaIleCysMetLeuGlyTyrTyrIleLeu 257528 : TTGTTTAGATGCACGCTGGCTATATGCATGCTGGGATACTACATTCTT : 257577 vulgar: gi|528747938|gb|AGS43064.1| 13 306 . KQ414889.1 256619 257577 + 421 M 56 168 G 1 0 M 90 270 G 0 3 M 80 240 G 0 3 M 33 99 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256620 257577 421 + . gene_id 8 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256620 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256620 257404 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257577 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257577 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256620 257577 421 + . alignment_id 8 ; Query gi|528747938|gb|AGS43064.1| ; Align 256620 14 168 ; Align 256788 71 270 ; Align 257061 161 240 ; Align 257304 241 99 ; Align 257482 275 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 403 Query range: 19 -> 397 Target range: 204221 -> 206401 20 : AspThrAspValGluTyrAlaIleLysLeuAsnArgTrpLeuLeuLysProIleGlyV : 39 !!: !|||:!!..!||||||! !:::!!! !:! !:!!||| ! !:!!|||! GluGluAspLeuArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyA 204222 : GAAGAGGACCTGAGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTG : 204279 40 : alTrpProLeuGluLeuSerSerSerArgThrGluArgIleValThrIleThrThrAl : 58 .!||||||:!! !:!!!:!||||||! ! ! !|||:!!||| ! !! ! ! laTrpProIleProValAsnSerSerProPheThrArgLeuValArgArgIleGluHi 204280 : CGTGGCCGATTCCAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACA : 204336 59 : aValThrCysCysLeuLeuMetSerPheValLeuThrIleProCysCysIleGluMet : 77 !|||..! ! ...|||... |||::::!!! !:!!||| !! !:!: ! :!! sValValThrTyrPheLeuPhe---PheLeuMetIleValProGlyLeuLeuTyrVal 204337 : CGTAGTCACCtatttcctcttc---tttctgaTGATCGTACCTGGCCTCTTGTACGTG : 204390 78 : PheSerSerGlnLysAspPheLysSerArgLeuGluMetLeuGlyProSerSerPheC : 97 ||| !!.!:!!|||:!! !|||! !||||||:!!!!:|||||||||! ! ! !| PheLeuLysGluLysAsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnC 204391 : TTCCTGAAGGAGAAGAACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACT : 204450 98 : ysValMetAlaValIleLysPhePhePhePheValIleArgGlyLysGluIleArgPh : 116 || !!!: ! !!.!!|||!:!! ! !!.!!:!! !||| ! ! :!!|||!:! ysSerIleGlnPhePheLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLy 204451 : GCAGCATACAGTTCTTCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAA : 204507 117 : eCysIleAspSerValValThrAspTrpArgAsnValAspValProGluGluArgAsn : 135 !!:!::!!!!!:!! ! !||||||! !.!.!.! ..! !|||.!.||| sSerLeuAsnThrIleArgArgAspTrpIleGluAla---ThrAspGluAsnArgLeu 204508 : GAGTTTGAACACCATCAGACGCGACTGGATAGAGGCT---ACGGATGAAAATCGGTTG : 204561 136 : IleMetLeuArgLysAlaLysSerAlaArgPheLeuThrThrValCysAlaLeuPheM : 155 |||.!.! ! !|||||||||! !!.!||| :!! ! !:!!...||| ! !| IlePheArgSerLysAlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrM 204562 : ATTTTCCGCTCGAAAGCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTA : 204621 156 : etTyrTyrGlyGlyIlePheTyrThrThrTyrLeuProLeuThrThrAlaLysAlaLe : 174 ||||| !||||||:!:! !|||! !||| !||||||||| !! !!.!! ! !:! etTyrGlyGlyGlyLeuCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleVa 204622 : TGTACGGCGGTGGTTTGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGT : 204678 175 : uSerThrGluAsnValThrIleArgIleLeuProTyrArgCysAsnPheIleLeuPhe : 193 !!!! !!!!:||||||||||||||| ||||||! !! ! ! |||:::...||| lThrProAspAsnValThrIleArgProLeuProCysProValTyrPheValPhePhe 204679 : AACACCTGATAACGTTACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttcttt : 204735 194 : AspProTyrAlaProLeuPhePheAspIleIleTyrPheLeuGlnCysLeuSerAlaA : 213 ::: ! ! ! !!! ! !!:!!!:|||:!!!:!.!.|||||| !:!!:!!!.! AsnGluGlnArgSerProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyP 204736 : aacGAGCAACGTTCGCCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTT : 204795 214 : laPheMetPheThrLeuThrSerGlyValCysSerLeuAlaAlaAsnPheIleIleHi : 232 ! !!! !:!.!!:!!! !||||||..!|||.!!:!!..!||| |||:!!:!!|| heValThrTyrAlaValIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHi 204796 : TTGTTACTTACGCTGTTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCA : 204852 233 : sAlaCysGlyGlnCysGlnIleIleGlyLeuLeuLeuGluAsnLeuValAspGlyArg : 251 |||||||.!!..! ::!|||:!:! ! ! !:!!.!. ||||||||| ! ! sAlaCysSerMetLeuArgIleLeuValAsnLysMetAsnAlaLeuValAspLysAla 204853 : CGCGTGCAGCATGCTGAGGATTTTGGTGAACAAGATGAACGCACTTGTGGATAAGGCG : 204909 252 : GlyAsnThrSerThrThrLeuGluLysArgIleAlaValValIleValArgHisLeuH : 271 ! !! |||..!||| !:!!.!.!:!!:!||||||! !:!!:!!! ! !!!. ! AspMetThrGluThrLeuValHisArgLysIleAlaAspIleValGluTyrGlnThrL 204910 : GACATGACCGAGACACTTGTGCACAGGAAGATCGCTGATATTGTTGAATATCAGACGA : 204969 272 : isLeuLeu{Ar} >>>> Target Intron 1 >>>> {g}PheValThrArgVa : 279 ! :!! !{||} 1047 bp {|} !..! !||| ysIleLys{Ar}++ ++{g}AsnThrGlyArgSe 204970 : AGATAAAG{AG}gt.........................ag{A}AATACAGGACGATC : 206040 280 : lGluAspValLeuAsnGluValCysLeuValGluPheLeuGlyCysThrLeuAsnIle : 298 ! ! ! !.....!..! :!! !:!! ||| !||||||! !..! ! rCysPheArgAsnGlyArgThrIleIleGlnGlnArgLeu***CysThrSerArgCys 206041 : GTGTTTTAGGAATGGGAGAACAATAATACAACAGCGGTTATAGTGTACATCACGTTGC : 206097 299 : CysLeuLeuGlyTyrTyrPheIleThrGlyLeuGluThrAlaAspThrAlaArgPheV : 318 ! ! !|||! !:!!! ! .!! ! !! !! |||:!!! !!:! ! !! : ArgTyrLeuValHisSerAlaPheLeuTyrTyrAlaThrSerGlySerPheLeuSerI 206098 : AGATATCTTGTACATTCTGCGTTTTTATACTATGCTACATCGGGCAGCTTCTTATCGA : 206157 319 : alThrPheAlaLeuLeuPheIleSerPheThrPheAsnIlePheIlePheCysTyrIl : 337 !!! !! !!.!:!! !!:! !!!! !|||!:: ::::::|||||| !:! leLysCysValIleThrTyrGln***SerThrTrpIleLeuTrpIlePheLeuThrLe 206158 : TCAAGTGCGTGATTACGTATCAATGAAGTACGTGGattctttggatttttttaaCTCT : 206214 338 : eGlyGlnLeuLeuThrAsn-----HisCysHisGlnIleGlyGluIleSerTyrThrI : 355 ! !::! !:!!|||! !#####!!. !||| :!:||| !! !|||! !|||: uThrArgSerIleThrIle#####GlnAsnHisValValGlyLeuThrSerCysThrV 206215 : TACTAGAAGTATTACCATTTTTAACAGAACCACGTCGTGGGATTGACATCTTGCACGG : 206273 356 : leAspTrpTyrArgIleProGlyAlaGlnAlaArgPheLeuIleLeuLeuIleAlaIl : 374 !::!!|||||||||:!!|||..! !!!.||||||! !:!!||||||:!!||||||!! alAsnTrpTyrArgLeuProAsnArgHisAlaArgSerMetIleLeuIleIleAlaMe 206274 : TGAATTGGTATCGTCTTCCAAACAGACATGCGCGCTCTATGATACTGATAATTGCCAT : 206330 375 : eAlaAsnArgProValThrIleThrAlaGlyLysIleValGlnLeuSerPheProCys : 393 ::!!||| !|||:!!! !:!!||||||||||||!!: !!:!!:!!|||!!. !! !! tSerAsnTyrProIleLysLeuThrAlaGlyLysMetPheGluMetSerLeuAlaSer 206331 : GTCTAATTACCCAATAAAATTAACAGCTGGTAAAATGTTCGAAATGTCTTTAGCTAGT : 206387 394 : PheArgAspVal : 397 |||! !|||||| PheThrAspVal 206388 : TTCACCGATGTA : 206401 vulgar: gi|528747938|gb|AGS43064.1| 19 397 . KQ414889.1 204221 206401 + 403 M 46 138 G 1 0 M 62 186 G 1 0 M 144 432 S 0 2 5 0 2 I 0 1043 3 0 2 S 1 1 M 69 207 F 0 5 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204222 206401 403 + . gene_id 9 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 204222 204979 . + . KQ414889.1 exonerate:protein2genome:local exon 204222 204979 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 204980 204981 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 204980 206026 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 206025 206026 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 206027 206401 . + . KQ414889.1 exonerate:protein2genome:local exon 206027 206401 . + . insertions 0 ; deletions 0 ; frameshifts 5 KQ414889.1 exonerate:protein2genome:local similarity 204222 206401 403 + . alignment_id 9 ; Query gi|528747938|gb|AGS43064.1| ; Align 204222 20 138 ; Align 204360 67 186 ; Align 204546 130 432 ; Align 206028 275 207 ; Align 206240 344 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 400 Query range: 17 -> 307 Target range: 274362 -> 275309 18 : AsnTyrAspThrAspValGluTyrAlaIleLysLeuAsnArgTrpLeuLeuLysProI : 37 |||!:!|||!:! ! !!!:|||::!:!::!!||||||||||||!!!|||||||||| AsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProI 274363 : AATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTA : 274420 38 : leGlyValTrpProLeuGluLeuSerSerSerArgThrGluArgIleValThrIleTh : 56 |||||!.!|||||||||! ! ! !!!!!!!!!:! !|||||||||:!!:!! leGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLeuSer---Hi 274421 : TAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCA---CA : 274474 57 : rThrAlaValThrCysCysLeuLeuMetSerPheValLeuThrIleProCysCysIle : 75 ! ::: ||| !! !.!.! !.!! ! !..!|||||| !! .!! sLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIlePhe 274475 : CCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTT : 274531 76 : GluMetPheSerSerGlnLysAspPheLysSerArgLeuGluMetLeuGlyProSerS : 95 .!.!!:.!. ! !.!.:!!..!.!! ! !!:!|||:!!:!!||||||||| !. HisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuG 274532 : CACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCG : 274591 96 : erPheCysValMetAlaValIleLysPhePhePhePheValIleArgGlyLysGluIl : 114 !! !!! !!!!:!.!! !|||!!.!:! ! .!.:!!:!!|||.!!|||||||| lyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIl 274592 : GTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGAT : 274648 115 : eArgPheCysIleAspSerValValThrAspTrpArgAsnValAspValProGluGlu : 133 |||| !|||:!:!!: !:!! !||||||||||||! !||| ! !||||||!!: eArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGluAsp 274649 : ACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGAT : 274705 134 : ArgAsnIleMetLeuArgLysAlaLysSerAlaArgPheLeuThrThrValCysAlaL : 153 !:!.!.:!:||||||!:!!!.||||||! !!.!|||!:!:!!.!!! ! !!|||||| GlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaA 274706 : CAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGG : 274765 154 : euPheMetTyrTyrGlyGlyIlePheTyrThrThrTyrLeuProLeuThrThrAlaLy : 172 !|||||| ! ! !|||! !:!!! !||| !..! ! !!!!!|||! ! !! laPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGlnTh 274766 : CGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGAC : 274822 173 : sAla<->LeuSerThrGluAsnValThrIleArgIleLeuProTyrArgCysAsnPhe : 190 !.! :!!.!!!.!|||!.! !|||:!:!.!!!:||||||! !!:!..! !! rValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyrLys 274823 : CGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAG : 274879 191 : IleLeuPheAspProTyrAlaProLeuPhePheAspIleIleTyrPheLeuGlnCysL : 210 ! :!! !!! ! !!.!! !! ! !!!:|||:!! ! !! !|||! !: LysIleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnPheV 274880 : AAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCG : 274939 211 : euSerAlaAlaPheMetPheThrLeuThrSerGlyValCysSerLeuAlaAlaAsnPh : 229 !!|||!.! !.!!:!! !:!! !.!! !|||!.!! !|||||||||||| || alSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaValPh 274940 : TGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTT : 274996 230 : eIleIleHisAlaCysGlyGlnCysGlnIleIleGlyLeuLeuLeuGluAsnLeuVal : 248 | !||||||! !||||||! ...:!::!: !:!!! !:!! .!.!!!||| eAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGluPheVal 274997 : CGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTG : 275053 249 : Asp<->GlyArgGlyAsnThrSerThrThrLeuGluLysArgIleAlaValValIleV : 267 :!! ..!|||! ............... .....!|||!.!||||||:!!! AsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValValValG 275054 : AATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCG : 275113 268 : alArgHisLeuHisLeuLeu{Ar} >>>> Target Intron 1 >>>> {g}Ph : 275 !!.!||||||...:!!|||{!!} 74 bp {!}|| luHisHisLeuArgValLeu{Se}++ ++{r}Ph 275114 : AACATCATCTGAGGGTACTC{AG}gt.........................ag{T}TT : 275211 276 : eValThrArgValGluAspValLeuAsnGluValCysLeuValGluPheLeuGlyCys : 294 |:!!.!!|||:!!|||||||||:!!|||..!:!!|||!!!:!!|||!!.!!! !||| eIleAlaArgIleGluAspValMetAsnArgIleCysPheMetGluLeuPheLysCys 275212 : CATAGCACGTATCGAGGATGTGATGAATCGAATATGCTTCATGGAATTGTTCAAGTGT : 275268 295 : ThrLeuAsnIleCysLeuLeuGlyTyrTyrPheIleThr : 307 ||||||:!!!!:|||:!!||||||||||||.!!:!!||| ThrLeuAspMetCysMetLeuGlyTyrTyrIleLeuThr 275269 : ACTCTGGATATGTGCATGCTTGGCTATTACATTCTCACG : 275309 vulgar: gi|528747938|gb|AGS43064.1| 17 307 . KQ414889.1 274362 275309 + 400 M 37 111 G 1 0 M 118 354 G 0 3 M 76 228 G 0 3 M 24 72 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274363 275309 400 + . gene_id 10 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274363 275135 . + . KQ414889.1 exonerate:protein2genome:local exon 274363 275135 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 275136 275137 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275136 275209 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275208 275209 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275210 275309 . + . KQ414889.1 exonerate:protein2genome:local exon 275210 275309 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274363 275309 400 + . alignment_id 10 ; Query gi|528747938|gb|AGS43064.1| ; Align 274363 18 111 ; Align 274474 56 354 ; Align 274831 174 228 ; Align 275062 250 72 ; Align 275211 275 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 371 Query range: 15 -> 274 Target range: 289708 -> 290482 16 : AsnLysAsnTyrAspThrAspValGluTyrAlaIleLysLeuAsnArgTrpLeuLeuL : 35 ||| ! ..!|||!!:||||||:!!...|||.!!.!!:!!||| !!.!|||:!!|||| AsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleLeuL 289709 : AACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCTTGA : 289766 36 : ysProIleGlyValTrpProLeuGluLeuSer<->SerSerArgThrGluArgIleVa : 53 |||||||||||:!!!::|||!!!! !!!||| :!!|||||| !||||||! !. ysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgThrAl 289767 : AACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAACGGC : 289823 54 : lThrIleThrThrAlaValThrCysCysLeuLeuMetSerPheValLeuThrIlePro : 72 !:!!:!: ! ! !:!!..!||||||! !:!!:!:..!|||:!!:!! :!!||| aSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIle---ValPro 289824 : GTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATA---GTACCG : 289877 73 : CysCysIleGluMetPheSerSerGlnLysAspPheLysSerArgLeuGluMetLeuG : 92 ! ! !! !.!.:!:.!.! !|||.!.!!.|||.!.!!.!!! !:!!:!!! |||| PheSerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuG 289878 : TTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCG : 289937 93 : lyProSerSerPheCysValMetAlaValIleLysPhePhePhePheValIleArgGl : 111 |||||! !!!!||||||:!!! .!! !!.!!|||!:!! !!:!||| !!!:!:!|| lyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGl 289938 : GACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGG : 289994 112 : yLysGluIleArgPheCysIleAspSerValValThrAspTrpArgAsnValAspVal : 130 |..!! !||| !! !|||:!: ! !:!!! !! !||||||!:!! :!! !! ! ySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAsp 289995 : TTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGAC : 290051 131 : ProGluGluArgAsnIleMetLeuArgLysAlaLysSerAlaArgPheLeuThrThrV : 150 !!!:.!.||| !|||||||||||| ! !.!! !! !::!||| !|||! !! !: GluAspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysL 290052 : GAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAAC : 290111 151 : alCysAlaLeuPheMetTyrTyrGlyGlyIlePheTyrThrThrTyrLeuProLeuTh : 169 !!||||||:!!|||:!!||| ||||||:!:! !|||!.!||| !:!!|||||| euCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPh 290112 : TGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTT : 290168 170 : rThrAlaLysAlaLeuSerThrGluAsnValThrIleArgIleLeuProTyrArgCys : 188 !:!! !|||::!:!!!:! ! ||||||||||||||| !||| !!|||! ! !! eSerLysLysSerValAsn---GlyAsnValThrIleArgProLeuThrTyrProGly 290169 : CTCGAAGAAGAGCGTGAAC---GGTAACGTGACTATCAGACCTCTAACTTATCCCGGT : 290222 189 : AsnPheIleLeuPheAspProTyrAlaProLeuPhePheAspIleIleTyrPheLeuG : 208 !! !!!|||||| ! ! ! !! ! !:!!!:|||:!!!:!! !:!!! TyrGluGluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetH 290223 : TACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGC : 290282 209 : lnCysLeuSerAlaAlaPheMetPheThrLeuThrSerGlyValCysSerLeuAlaAl : 227 !.|||:!!! !!.! !.!!! ! !.!:!!|||! !!.!!.!! !||||||.!!.! isCysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrTh 290283 : ACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGAC : 290339 228 : aAsnPheIleIleHisAlaCysGlyGlnCysGlnIleIleGlyLeuLeuLeuGluAsn : 246 !! !||| !! !|||.!!||||||||| !:!!||| ! ! !! !||||||:!! rIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAsp 290340 : GATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGAT : 290396 247 : LeuValAspGlyArgGlyAsnThrSerThrThrLeuGluLysArgIleAlaValValI : 266 |||..! ! !! !! ! !..!! ! !:!!... ! |||:!:|||||||||: LeuThrLysArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValValV 290397 : CTGACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTGTTG : 290456 267 : leValArgHisLeuHisLeuLeuArg : 274 !: ! !!|||:!!.!.:!!|||!:! alSerGlyHisValGluIleLeuLys 290457 : TGAGCGGTCACGTGGAGATCTTGAAG : 290482 vulgar: gi|528747938|gb|AGS43064.1| 15 274 . KQ414889.1 289708 290482 + 371 M 30 90 G 0 3 M 24 72 G 1 0 M 105 315 G 1 0 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289709 290482 371 + . gene_id 11 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289709 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289709 290482 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 289709 290482 371 + . alignment_id 11 ; Query gi|528747938|gb|AGS43064.1| ; Align 289709 16 90 ; Align 289802 46 72 ; Align 289874 71 315 ; Align 290189 177 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 349 Query range: 23 -> 307 Target range: 262846 -> 263773 24 : GluTyrAlaIleLysLeuAsnArgTrpLeuLeuLysProIleGlyValTrpProLeuG : 43 !!:|||::!:!::!!:!!|||||||||||||||||||||||||||!.!|||||||||. AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 44 : luLeuSerSerSerArgThrGluArgIleValThrIleThrThrAlaValThrCysCy : 62 .. !|||! !||||||! !|||||||||:!! !.!! ! ! !|||..!|||! erAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTy 262905 : CCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTA : 262961 63 : sLeuLeuMetSerPheValLeuThrIleProCysCysIleGluMetPheSerSerGln : 81 !! !|||!!: .!. ! !..!||||||! ! :!!.!.!!: !! !..! rCysLeuIle---LeuSerThrValIleProSerIleLeuHisIleValLeuGluAla 262962 : CTGTCTCATA---CTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCC : 263015 82 : LysAspPheLysSerArgLeuGluMetLeuGlyProSerSerPheCysValMetAlaV : 101 :!!:!!||| ! ! !!:!|||:!!:!:||||||||| !.!! !! !!:!:!.!: GluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyM 263016 : GAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTA : 263075 102 : alIleLysPhePhePhePheValIleArgGlyLysGluIleArgPheCysIleAspSe : 120 !!|||!!.!:! !!::!!.:!!:!!!.!.!!|||!!:|||!:! !|||:!:.!. etIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHi 263076 : TGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACA : 263132 121 : rValValThrAspTrpArgAsnValAspValProGluGluArgAsnIleMetLeuArg : 139 !||| ! !|||||| !!! !||| ! ! !|||!!:!:!..!|||||||||!:! sValGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLys 263133 : CGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAG : 263189 140 : LysAlaLysSerAlaArgPheLeuThrThrValCysAlaLeuPheMetTyrTyrGlyG : 159 !!.||||||! !!.!|||!:!:!!.!!.!! !||||||:!!|||||| ! .!! AsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerI 263190 : AACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCA : 263249 160 : lyIlePheTyrThrThrTyrLeuProLeuThrThrAlaLysAlaLeu<->SerThrGl : 177 !!!:! ! ! ! ! ! ! !!!!!|||||| ! ! ! ! .!!!.!|| leMetCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGl 263250 : TCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGA : 263306 178 : uAsnValThrIleArgIleLeuProTyrArgCysAsnPheIleLeuPheAspProTyr : 196 |!.! !! !:!!|||!!:||||||! !! ! !! :!!.!! ! !! uThrArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAsp 263307 : GACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGAC : 263363 197 : AlaProLeuPhePheAspIleIleTyrPheLeuGlnCysLeuSerAlaAlaPheMetP : 216 .!! !! ! !!!:|||.!! ! ! !|||! !||||||!.! !.!!:!: ThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValT 263364 : ACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCA : 263423 217 : heThrLeuThrSerGlyValCysSerLeuAlaAlaAsnPheIleIleHisAlaCysGl : 235 !.!! !||| !|||!.!! !.!!:!!.!!||| ||| ! !||||||||||| hrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGl 263424 : CCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGG : 263480 236 : yGlnCysGlnIleIle<->GlyLeuLeuLeuGluAsnLeuValAspGlyArgGlyAsn : 253 ||||! .!.:!::!: ..!! !:!! !||| !:!! !.!...!|||! !.!. yGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGlu 263481 : ACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAG : 263537 254 : ThrSerThrThrLeuGluLysArgIleAlaValValIleValArgHisLeuHisLeuL : 273 !.!!.!!.! !! ! ! ..!|||!.!|||:!!:!!! !!.!||||||...:!!| AsnLysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValL 263538 : AATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTC : 263597 274 : eu{Ar} >>>> Target Intron 1 >>>> {g}PheValThrArgValGluAs : 281 ||{!!} 72 bp {!}|||:!! !|||:!!:!!:! eu{Se}++ ++{r}PheIleAspArgIleLysAs 263598 : TG{AG}gt.........................ag{T}TTCATAGATCGTATTAAGAA : 263693 282 : pValLeuAsnGluValCysLeuValGluPheLeuGlyCysThrLeuAsnIleCysLeu : 300 !|||:!!!:! !:!!|||!!!||||||!!.!!! !..!||||||:!!||||||:!! nValMetSerThrIleCysPheValGluLeuPheLysAlaThrLeuAspIleCysMet 263694 : TGTGATGAGTACGATATGTTTCGTGGAGTTATTCAAGGCTACGCTGGATATATGCATG : 263750 301 : LeuGlyTyrTyrPheIleThr : 307 ||||||||||||.!.:!!||| LeuGlyTyrTyrIleLeuThr 263751 : CTAGGTTACTACATACTTACG : 263773 vulgar: gi|528747938|gb|AGS43064.1| 23 307 . KQ414889.1 262846 263773 + 349 M 42 126 G 1 0 M 108 324 G 0 3 M 66 198 G 0 3 M 33 99 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 263773 349 + . gene_id 12 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262847 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263601 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 263673 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263672 263673 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 263674 263773 . + . KQ414889.1 exonerate:protein2genome:local exon 263674 263773 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262847 263773 349 + . alignment_id 12 ; Query gi|528747938|gb|AGS43064.1| ; Align 262847 24 126 ; Align 262973 67 324 ; Align 263300 175 198 ; Align 263501 241 99 ; Align 263675 275 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 342 Query range: 17 -> 277 Target range: 232438 -> 233218 18 : AsnTyrAspThrAspValGluTyrAlaIleLysLeuAsnArgTrpLeuLeuLysProI : 37 ||| ! !||| !||||||::!|||:!!:!!|||||||||!!!|||! !|||! AsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheLeuThrProM 232439 : AACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGA : 232496 38 : leGlyValTrpProLeuGluLeuSerSerSerArgThrGluArgIleValThrIleTh : 56 !:|||!.!||||||! !! !..!!!!||||||.!!:!!!:!:!!:!!.!!! ! etGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLe 232497 : TGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACT : 232553 57 : rThrAlaValThrCysCysLeuLeuMetSerPheValLeuThrIleProCysCysIle : 75 ! ! !:!!|||||| !! !||||||! !! ! !:!! :!!|||||| !:!: uLeuArgLeuThrCysHisSerLeuMetIleSerSerIle---ValProCysIleLeu 232554 : GTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATC---GTACCGTGCATTCTG : 232607 76 : GluMetPheSerSerGlnLysAspPheLysSerArgLeuGluMetLeuGlyProSerS : 95 !!:.!.! !..!.!.! !..!.!.:!!..!|||:!!:!! :!!||||||! !| PheIleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleGlyProMetS 232608 : TTCATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGA : 232667 96 : erPheCysValMetAlaValIleLysPhePhePhePheValIleArgGlyLysGluIl : 114 || !! !:!!|||!.!! !:!:!!.!:!! !! !!!.:!! !!:!!.!!!.!!:|| erHisPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIl 232668 : GTCACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACAT : 232724 115 : eArgPheCysIleAspSerValValThrAspTrpArgAsnValAspValProGluGlu : 133 |! !!:!|||:!:!!:..!||| ! !||||||||||||||| ! !|||! .!. eLeuTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLysProValHis 232725 : CCTCTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCAT : 232781 134 : ArgAsnIleMetLeuArgLysAlaLysSerAlaArgPheLeuThrThrValCysAlaL : 153 |||:!!:!:||||||!:!!!.|||||| !!.!|||! :!!.!! !:!!..!|||! ArgAspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleAlaAlaP 232782 : CGTGATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGT : 232841 154 : euPheMetTyrTyrGly<->GlyIlePheTyrThrThrTyrLeuProLeuThrThrAl : 171 !!! !|||:!! !||| ||| ! ! ! ! !..! !! !! !! !!:!.! heCysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuArgMetSerTh 232842 : TTTGCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTATGAGCAC : 232898 172 : aLysAlaLeuSerThrGluAsnValThrIleArgIleLeuProTyrArgCysAsnPhe : 190 ! !:!!.!!!.!|||!:! !:!!!!: ! ||||||! !! !! ! !! rPheTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPheTyrThr 232899 : GTTCTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACG : 232955 191 : IleLeuPheAspProTyrAlaProLeuPhePheAspIleIleTyrPheLeuGlnCysL : 210 ! |||.!.||| !! ! !! ! !!!:|||!!:!:! !!|||||||||| LysLeuMetAspThrArgPheSerProThrAsnGluIleMetPheValLeuGlnCysL 232956 : AAGCTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTC : 233015 211 : euSerAlaAlaPheMetPheThrLeuThrSerGlyValCysSerLeuAlaAlaAsnPh : 229 |||||!.! !.!!:!! !:!!:!!||| !|||!.!|||.!!|||!.!||| !.! euSerGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAlaValLe 233016 : TCTCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCT : 233072 230 : eIleIleHisAlaCysGlyGlnCysGlnIleIleGlyLeuLeuLeuGluAsnLeuVal : 248 . !!:||||||||||||||| .!.:!::!: !! ! !|||!!::!!|||||| uAlaMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAspLeuVal 233073 : AGCGATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTG : 233129 249 : AspGlyArgGlyAsnThrSerThrThrLeuGluLysArgIleAlaValValIleValA : 268 |||!.!!:!|||.!. !..!! !..! !:!!!:!!:!:!!!.! !!:!!:!:! !! AspAlaLysGlyGlnGluGluArgValAlaGlnArgLysLeuGlyPheIleValGluH 233130 : GACGCGAAAGGGCAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGC : 233189 269 : rgHisLeuHisLeuLeuArgPheValThr : 277 .!||||||!.! !||||||!:!:!!:!! isHisLeuArgThrLeuArgTyrLeuSer 233190 : ATCATTTGCGTACATTAAGGTATTTGTCT : 233218 vulgar: gi|528747938|gb|AGS43064.1| 17 277 . KQ414889.1 232438 233218 + 342 M 52 156 G 1 0 M 88 264 G 0 3 M 119 357 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232439 233218 342 + . gene_id 13 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232439 233218 . + . KQ414889.1 exonerate:protein2genome:local exon 232439 233218 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 232439 233218 342 + . alignment_id 13 ; Query gi|528747938|gb|AGS43064.1| ; Align 232439 18 156 ; Align 232595 71 264 ; Align 232862 159 357 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 320 Query range: 10 -> 274 Target range: 266595 -> 267390 11 : LysSerAspIleProAsnLysAsnTyrAspThrAspValGluTyrAlaIleLysLeuA : 30 :!!||| :!! !.!. !||| :!!!:! !!!:|||::!:!::!!|||| GluSerLeuValIleGluAlaAsnLeuAsnSerLeuSerAspTyrSerLeuGlnLeuA 266596 : GAGTCGTTGGTAATCGAAGCGAATCTAAACAGTCTGAGCGATTACAGCCTGCAATTGA : 266653 31 : snArgTrpLeuLeuLysProIleGlyValTrpProLeuGluLeuSerSerSerArgTh : 49 ||||||||!!!|||||||||||||||!.!||||||! ! !! ! !!!!|||!:! snArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerLeuThrSerLysLe 266654 : ATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCACTCACATCTAAACT : 266710 50 : rGluArgIleValThrIleThrThrAlaValThrCysCysLeuLeuMetSerPheVal : 68 !||||||||||||:!! !.!! ! !|||! !|||! !! !! !!!: !|||..! uGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSerIleLeuPheThr 266711 : CGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTCCATACTGTTCACC : 266767 69 : LeuThrIleProCysCysIleGluMetPheSerSerGlnLysAspPheLysSerArgL : 88 :!! |||||||||! .!!.!.:!: !! !..!.!.:!!..!.!!:::!!!!:!: Val---IleProCysLeuPheHisLeuValLeuGluAspGluSerIleArgThrLysV 266768 : GTA---ATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTACGAAAG : 266824 89 : euGluMetLeuGlyProSerSerPheCysValMetAlaValIleLysPhePhePhePh : 107 !!:!!:!!!!!|||||| !||| !!! !!:!:!.!! !|||!!.!:! ! .! alLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnTyrThrThrLe 266825 : TGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACACCACACT : 266881 108 : eValIleArgGlyLysGluIleArgPheCysIleAspSerValValThrAspTrpArg : 126 .:!!:!!|||.!!|||||||||||| !|||:!!!!: !:!! !|||||||||||| uLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnThrAspTrpArg 266882 : GTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAACAGATTGGAGG : 266938 127 : AsnValAspValProGluGluArgAsnIleMetLeuArgLysAlaLysSerAlaArgP : 146 ! !||| ! !||||||!!:!:!.!.:!:||||||!:!!!.|||!:!! !!.!|||! IleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArgIleGlyArgT 266939 : ATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCGGTCGTT : 266998 147 : heLeuThrThrValCysAlaLeuPheMetTyrTyrGlyGlyIlePheTyrThrThrTy : 165 :!:!!.!!! ! !!|||||| !|||||| ! ! !|||! !:!! !||| !..! yrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCysValIl 266999 : ACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGTGAT : 267055 166 : rLeuProLeuThrThrAlaLysAla<->LeuSerThrGluAsnValThrIleArgIle : 183 ! !!!!!|||! ! !! !.! :!!.!!!.!|||!.! !! !:!!!.!:!: eThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrArgIleValHisLeu 267056 : AACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTACATCTG : 267112 184 : LeuProTyrArgCysAsnPheIleLeuPheAspProTyrAlaProLeuPhePheAspI : 203 ||||||! ! ! ! !! ! :!!.!!! ! !!.!! !! ! !!!:| LeuProCysAlaValTyrLysLysMetIleAlaValAspThrSerProThrAsnGluI 267113 : TTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGCCCGACGAACGAGA : 267172 204 : leIleTyrPheLeuGlnCysLeuSerAlaAlaPheMetPheThrLeuThrSerGlyVa : 222 ||:!! ! !!! !|||! !:!!|||!.! !.!!:!! !:!! !..! !|||!. leValLeuValSerGlnPheValSerGlyPheIleValAsnSerSerValValGlyAl 267173 : TTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCGGTGC : 267229 223 : lCysSerLeuAlaAlaAsnPheIleIleHisAlaCysGlyGlnCysGlnIleIleGly : 241 !! !|||||||||||| ||| !||||||||||||||| ...:!::!: ! aPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLeuSerValLeuMet 267230 : TTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTGATG : 267286 242 : LeuLeuLeuGluAsnLeuValAsp<->GlyArgGlyAsnThrSerThrThrLeuGluL : 260 :!!! !:!!:!!.!.!!!|||:!! ..!|||! !!:!!.!!.!!.!..!! ! MetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLysAsnValCysPheA 267287 : ATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTTGCTTCG : 267346 261 : ysArgIleAlaValValIleValArgHisLeuHisLeuLeuArg : 274 ! !:!|||!.!||||||:!!! !!.!||||||...:!!|||||| spLysIleGlyValValValGluHisHisLeuArgValLeuArg 267347 : ATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGAGG : 267390 vulgar: gi|528747938|gb|AGS43064.1| 10 274 . KQ414889.1 266595 267390 + 320 M 59 177 G 1 0 M 103 309 G 0 3 M 76 228 G 0 3 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266596 267390 320 + . gene_id 14 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266596 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266596 267390 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 266596 267390 320 + . alignment_id 14 ; Query gi|528747938|gb|AGS43064.1| ; Align 266596 11 177 ; Align 266773 71 309 ; Align 267085 174 228 ; Align 267316 250 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 315 Query range: 10 -> 247 Target range: 194129 -> 194831 11 : LysSerAspIleProAsnLysAsnTyrAspThrAspValGluTyrAlaIleLysLeuA : 30 ||||||:!! !! !||| |||||| ! !|||..!|||||||||:!!::!:!! LysSerAsnTyrArgAsnValAsnTyrLysLeuAspThrGluTyrAlaValArgValA 194130 : aaatcgAATTACCGCAACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAGTAG : 194187 31 : snArgTrpLeuLeuLysProIleGlyValTrpProLeuGluLeuSerSerSerArgTh : 49 !:! !||||||! !|||||||||:!!|||||| !||| !||| ! !! !! laLysAlaLeuLeuThrProIleGlyIleTrpProArgGluAspSerLeuArgAspAr 194188 : CAAAAGCGCTTCTAACACCGATCGGTATCTGGCCAAGGGAGGATTCTCTTCGCGACAG : 194244 50 : rGluArgIleValThrIleThrThrAlaValThrCysCysLeuLeuMetSerPheVal : 68 !! |||:!: !!.!! !||| !!.!||| !..! ||||||!!!|||:!! gValArgLeuPheAlaGlnThrGlyValValPheAla------LeuMetCysPheLeu 194245 : AGTCCGACTGTTCGCTCAAACTGGCGTGGTCTTCGCT------TTGATGTGCTTTCTA : 194295 69 : LeuThrIleProCysCysIleGluMetPheSerSerGlnLysAspPheLysSerArgL : 88 ||| :!!||| ! ||| ! ! !:!! !..! :!!|||.!.! !!!! !: Leu---ValProHisValIleTyrThrTyrPheAspCysGluAspLeuThrArgTyrM 194296 : CTG---GTACCTCACGTGATCTACACTTACTTCGACTGCGAGGATCTGACGAGGTACA : 194352 89 : euGluMetLeuGlyProSerSerPheCysValMetAlaValIleLysPhePhePhePh : 107 !!:!!:!::!!!.! !!..! !||| !!:!!:!!|||:!!|||||||||!:: .! etLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleIleLysPheTrpThrMe 194353 : TGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGAT : 194409 108 : eValIleArgGlyLysGluIleArgPheCysIleAspSerValValThrAspTrpArg : 126 .:!!:!:!.! !!||||||||||||||||||:!: ..!:!!! !|||.!.!::||| tIleValAsnArgLysGluIleArgPheCysLeuLeuGluMetGluThrGlnTyrArg 194410 : GATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGA : 194466 127 : AsnValAspValProGluGluArgAsnIleMetLeuArgLysAlaLysSerAlaArgP : 146 :!!|||!!: ! !|||!!:|||.!.:!:||| !!.! ||||||! !!.!|||| AspValGluCysGluGluAspArgGlnValMetThrAsnCysAlaLysIleGlyArgP 194467 : GACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGCGCGAAAATCGGCCGAT : 194526 147 : heLeuThrThrValCysAlaLeuPheMetTyrTyrGlyGlyIlePheTyrThrThrTy : 165 ||!!!||||||:!!! ! ! !.!! ||| !|||!.!:!: ||| !! ! hePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIl 194527 : TTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTTTGCCGTACCACATTAT : 194583 166 : rLeuProLeuThrThrAlaLysAlaLeuSerThrGluAsnValThrIleArgIleLeu : 184 !|||||||||! !:!!! !!:! !:!!!.! !!!:||| !||| ! ! !||| eLeuProLeuMetSerGluArgIleValLysGluAspAsnSerThrGlnIleProLeu 194584 : TCTACCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAACAGTACTCAGATACCTCTG : 194640 185 : ProTyrArgCysAsnPheIleLeuPheAspProTyrAlaProLeuPhePheAspIleI : 204 |||||| ! !!|||!:!:!!!!!|||! ! ! ! ! !!! !.!!!:!!!:|||! ProTyrLeuSerAsnTyrValPhePheAlaIleGluAspSerProIleTyrGluIleT 194641 : CCATATTTGAGCAACTATGTTTTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTA : 194700 205 : leTyrPheLeuGlnCysLeuSerAlaAlaPheMetPheThrLeuThrSerGlyValCy : 223 !!:! !!! !||| |||! !::!::!.!!!!:!!.:!! !!.!!!!|||:!!! hrPheValSerGlnIleLeuIleSerSerIleIleLeuSerThrAsnCysGlyIleTy 194701 : CATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGTCGACGAATTGTGGGATTTA : 194757 224 : sSerLeuAlaAlaAsnPheIleIleHisAlaCysGlyGlnCysGlnIleIleGlyLeu : 242 !||||||!.!|||!.!.!!|||!!:|||..!|||||| !! !:!!:!:! !.!! ! rSerLeuValAlaThrIleIleMetHisCysCysGlyLeuPheGluValThrSerArg 194758 : TAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGA : 194814 243 : LeuLeuGluAsnLeu : 247 !:!!|||!.!:!! ArgMetGluThrIle 194815 : AGGATGGAGACTATT : 194831 vulgar: gi|528747938|gb|AGS43064.1| 10 247 . KQ414889.1 194129 194831 + 315 M 51 153 G 2 0 M 6 18 G 1 0 M 177 531 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194130 194831 315 + . gene_id 15 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194130 194831 . + . KQ414889.1 exonerate:protein2genome:local exon 194130 194831 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 194130 194831 315 + . alignment_id 15 ; Query gi|528747938|gb|AGS43064.1| ; Align 194130 11 153 ; Align 194283 64 18 ; Align 194301 71 531 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 304 Query range: 10 -> 273 Target range: 259730 -> 260522 11 : LysSerAspIleProAsnLysAsnTyrAspThrAspValGluTyrAlaIleLysLeuA : 30 ||||||! .!! !.!.! !!:!!:! !!:! !! !!!:|||::!:!!:!!!!!| LysSerValPheValGluThrSerPheThrSerHisSerAspTyrSerLeuGlnPheA 259731 : AAATCGGTGTTCGTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCCAATTTA : 259788 31 : snArgTrpLeuLeuLysProIleGlyValTrpProLeuGluLeuSerSerSerArgTh : 49 ||||||||!!!|||||||||||||||!.!||||||! !..!! !|||!!!!!!||| snArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerSerThrThrArgLe 259789 : ATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCACGACCAGACT : 259845 50 : rGluArgIleValThrIleThrThrAlaValThrCysCysLeuLeuMetSerPheVal : 68 !|||!:!|||:!!:!!:!! ! ! !:!! ! !|||! ! !! ! !.!.||| uGluLysIleIleSerVal---IleLeuIlePheIleCysTyrSerThrIleLeuVal 259846 : CGAGAAGATCATCTCTGTT---ATCCTGATCTTTATCTGCTACAGTACCATACTGGTC : 259899 69 : LeuThrIleProCysCysIleGluMetPheSerSerGlnLysAspPheLysSerArgL : 88 ! !||||||||| :!!.!.|||.!. !..!:!!:!!..!!!. ! ! !!:! ThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeuTyrMetLysT 259900 : ACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAA : 259959 89 : euGluMetLeuGlyProSerSerPheCysValMetAlaValIleLysPhePhePhePh : 107 !:!!:!!||||||||| !!!! !!! !!:!:!.! !|||!!.!:! !! hrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnTyrThrThrLe 259960 : CGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTT : 260016 108 : eValIleArgGlyLysGluIleArgPheCysIleAspSerValValThrAspTrpArg : 126 .:!!:!:||||||!:!!!:|||! ! !|||:!:!!: !|||! !!.!||||||||| uLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAsnAspTrpArg 260017 : GTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGA : 260073 127 : AsnValAspValProGluGluArgAsnIleMetLeuArgLysAlaLysSerAlaArgP : 146 ! !:!! ! !:!!!!:!:!|||:!:||||||||| ! ||||||! !!.!|||! IleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgT 260074 : ATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGAT : 260133 147 : heLeuThrThrValCysAlaLeuPheMetTyrTyrGlyGlyIlePheTyrThrThrTy : 165 :!:!!.!!.!! !|||||| !|||:!! ! !|||! !:!:! !!:! ! ! yrValAlaAlaSerCysAlaAlaPheValGlnGlyGlyValLeuCysPheCysLeuVa 260134 : ACGTCGCTGCCTCTTGCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTCTGTTTGGT : 260190 166 : rLeuProLeuThrThr<->AlaLysAlaLeuSerThrGluAsnValThrIleArgIle : 183 ! ! !|||!:!||| !.!! ! !:!!.!!!.!|||!.. !! !:!!!.!:!: lThrValLeuSerThrGluValIleGlnValGlyAsnGluThrArgIleValHisLeu 260191 : CACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTG : 260247 184 : LeuProTyrArgCysAsnPheIleLeuPheAspProTyrAlaProLeuPhePheAspI : 203 ||||||! ! ! !! |||.!.:!! ! !!! ! !! !.!. !!!:| LeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSerProMetAsnGluI 260248 : TTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGA : 260307 204 : leIleTyrPheLeuGlnCysLeuSerAlaAlaPheMetPheThrLeuThrSerGlyVa : 222 ||:!! ! !!:!!|||! !:!!|||!.! !.!.:!! !:!! !||| !|||:! leValLeuValValGlnPheValSerGlyPheIleValAsnSerSerThrValGlyIl 260308 : TTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAAT : 260364 223 : lCysSerLeuAlaAlaAsnPheIleIleHisAlaCysGlyGlnCysGlnIleIleGly : 241 !! !|||||||||||| !.!.! ! !|||||||||||||||! .!.:!::!! ! ePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMet 260365 : CTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATG : 260421 242 : LeuLeuLeuGluAsnLeuValAsp<->GlyArgGlyAsnThrSerThrThrLeuGluL : 260 !! !:!! !.!.!!!|||||| ..!|||..!!..! !!.!! !.!!! ! | GluTrpIleThrGluPheValAspGluSerArgAsnArgLysLysLysAlaProPheL 260422 : GAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTCCTTTCA : 260481 261 : ysArgIleAlaValValIleValArgHisLeuHisLeuLeu : 273 ||..!|||!.!|||:!!:!!! !!.!||||||... !||| ysGluIleGlyValIleValGluHisHisLeuArgAlaLeu 260482 : AGGAGATCGGAGTGATTGTCGAACATCATTTGAGAGCACTC : 260522 vulgar: gi|528747938|gb|AGS43064.1| 10 273 . KQ414889.1 259730 260522 + 304 M 45 135 G 1 0 M 114 342 G 0 3 M 79 237 G 0 3 M 24 72 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259731 260522 304 + . gene_id 16 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259731 260522 . + . KQ414889.1 exonerate:protein2genome:local exon 259731 260522 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 259731 260522 304 + . alignment_id 16 ; Query gi|528747938|gb|AGS43064.1| ; Align 259731 11 135 ; Align 259866 57 342 ; Align 260211 171 237 ; Align 260451 250 72 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 247 Query range: 111 -> 274 Target range: 304386 -> 304869 112 : LysGluIleArgPheCysIleAspSerValValThrAspTrpArgAsnValAspValP : 131 |||...::: !||| ! !! ..!:!! !|||! !::..!.!.|||!!: !! LysArgLeuValPheArg***GlyAspLeuSerThrGlyTyrGluGlnValGluSerL 304387 : aaacgtttaGTGTTTCGATAAGGGGATCTCTCTACTGGATATGAACAGGTGGAATCTC : 304444 132 : roGluGluArgAsnIleMetLeuArgLysAlaLysSerAlaArgPheLeuThrThrVa : 150 !..!!!:|||.!.!!:||||||!:! ! !.!:!!! !!.!||| !||||||! !:! euArgAspArgGluMetMetLeuLysTyrGlyGlnMetGlyArgAsnLeuThrIleIl 304445 : TCAGAGATCGTGAAATGATGCTAAAATACGGGCAAATGGGTCGAAATCTGACGATAAT : 304501 151 : lCysAlaLeuPheMetTyrTyrGlyGlyIlePheTyrThrThrTyrLeuProLeuThr : 169 !||||||:!!||||||||| !||||||! !.!!||| !||| !:!!! !!!!.!! eCysAlaIlePheMetTyrThrGlyGlyThrIleTyrHisThrValMetGlnPheAla 304502 : CTGCGCCATATTTATGTATACCGGCGGCACCATTTATCACACGGTCATGCAGTTCGCG : 304558 170 : ThrAlaLysAlaLeuSerThrGluAsnValThrIleArgIleLeuProTyrArgCysA : 189 |||!.!! ! !:!!..! ! ! ||| !||||||!:! ||| !|||! ! ! ThrGlyThrTyrValAspGluTyrAsnArgThrIleLysProLeuValTyrProThrT 304559 : ACCGGAACGTATGTGGATGAGTATAATCGTACGATTAAACCGCTCGTCTATCCCACCT : 304618 190 : snPheIleLeuPheAspProTyrAlaProLeuPhePheAspIleIleTyrPheLeuGl : 208 !! ! !||||||||| ! ! .!! !! !.!!!:!!!::!::!!||||||:!!!! yrSerAlaLeuPheAspValGlnThrSerProIleTyrGluLeuValTyrPheValHi 304619 : ACAGTGCTTTATTTGACGTTCAAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCA : 304675 209 : nCysLeuSerAlaAlaPheMetPheThrLeuThrSerGlyValCysSerLeuAlaAla : 227 .|||:!!!!!!.! ! ! !!:!:!:!!:!!|||:!!|||!.!|||.!!||||||||| sCysMetCysGlyTyrValIleTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAla 304676 : TTGCATGTGCGGATACGTAATTTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCT : 304732 228 : AsnPheIleIleHisAlaCysGlyGlnCysGlnIleIleGlyLeuLeuLeuGluAsnL : 247 !||| !! !||||||||||||||| !.!.|||:!! !! !! !|||! :!!| LeuPheAlaThrHisAlaCysGlyGlnIleAspIleValMetSerArgLeuGlyAspL 304733 : CTTTTCGCTACACACGCTTGTGGACAAATTGATATCGTTATGTCTCGATTGGGTGATC : 304792 248 : euValAspGlyArgGlyAsnThrSerThrThrLeuGluLysArgIleAlaValValIl : 266 |||||:!!.!!!:! !|||:!! !|||!!:||||||:!! !! !:!!:! euValAsnSerLys------GluSerSerAspLeuAspLysArgLeuIleGluIleVa 304793 : TTGTCAACAGCAAA------GAATCATCTGATTTAGATAAACGATTAATAGAAATTGT : 304843 267 : eValArgHisLeuHisLeuLeuArg : 274 !! !!.!||||||!..:!!|||||| lGluHisHisLeuArgIleLeuArg 304844 : TGAGCATCATTTGCGAATTTTAAGG : 304869 vulgar: gi|528747938|gb|AGS43064.1| 111 274 . KQ414889.1 304386 304869 + 247 M 140 420 G 2 0 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304387 304869 247 + . gene_id 17 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304387 304869 . + . KQ414889.1 exonerate:protein2genome:local exon 304387 304869 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 304387 304869 247 + . alignment_id 17 ; Query gi|528747938|gb|AGS43064.1| ; Align 304387 112 420 ; Align 304807 254 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 235 Query range: 20 -> 204 Target range: 294675 -> 295227 21 : ThrAspValGluTyrAlaIleLysLeuAsnArgTrpLeuLeuLysProIleGlyValT : 40 !.!||||||! ! !!::!:!!|||! ! !||| !!||||||||||||||||||:!!| AsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuT 294676 : AACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTT : 294733 41 : rpProLeuGluLeuSer<->SerSerArgThrGluArgIleValThrIleThrThrAl : 58 |||||||| ! !||| !!!|||!:! !.!.!:!:!!:!!:!!|||! ! ! rpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIl 294734 : GGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGAT : 294790 59 : aValThrCysCysLeuLeuMetSerPheValLeuThrIleProCysCysIleGluMet : 77 !!.! !||| ||| !:!: !||||||||| :!:|||||| ! ! eAlaTrpCysThrLeuThrValLeuPheValLeu---ValProCysGlyTyrPheCys 294791 : CGCGTGGTGTACGTTGACCGTACTGTTCGTTTTA---GTGCCATGCGGATACTTCTGT : 294844 78 : PheSerSerGlnLysAspPheLysSerArgLeuGluMetLeuGlyProSerSerPheC : 97 ! ! ! ! |||::: ||| ::!:!!:!!:!:||||||||| ! !!:!! ValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrS 294845 : GTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACT : 294904 98 : ysValMetAlaValIleLysPhePhePhePheValIleArgGlyLysGluIleArgPh : 116 !:!!:!::!!:!!:!!!:!!:! !! !.!.|||:!:!:! ! ! !.!!!:! erMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHi 294905 : CTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCA : 294961 117 : eCysIleAspSerValValThrAspTrpArgAsnValAspValProGluGluArgAsn : 135 !||||||!!:..!:!!! !!.!||||||!:! :!!||| !||||||.!.||| sCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAla 294962 : TTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCG : 295018 136 : IleMetLeuArgLysAlaLysSerAlaArgPheLeuThrThrValCysAlaLeuPheM : 155 ||||||:!!!:!!!.|||! ! !.!!!:! :!!|||..!!.!! !.!!:!!.!.! IleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleI 295019 : ATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAA : 295078 156 : etTyrTyrGlyGlyIlePheTyrThrThrTyrLeuProLeuThrThrAlaLysAlaLe : 174 !:||| !..!!.!:!:! ||| !.!! !:::|||... ::: ! leTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGl 295079 : TCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGA : 295135 175 : uSerThrGluAsnValThrIleArgIleLeuProTyrArgCysAsnPheIleLeuPhe : 193 !!:!! !:!!||| !||||||||| |||||| !! ! !! !! :!!!!! ! uAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheVal 295136 : GAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTA : 295192 194 : AspProTyrAlaProLeuPhePheAspIleIle : 204 ||| !!|||:!! !! ! !!:!!!:|||||| AspAlaTyrSerSerProThrTyrGluIleIle 295193 : GACGCTTATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: gi|528747938|gb|AGS43064.1| 20 204 . KQ414889.1 294675 295227 + 235 M 25 75 G 0 3 M 24 72 G 1 0 M 134 402 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294676 295227 235 + . gene_id 18 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294676 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294676 295227 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 294676 295227 235 + . alignment_id 18 ; Query gi|528747938|gb|AGS43064.1| ; Align 294676 21 75 ; Align 294754 46 72 ; Align 294826 71 402 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 234 Query range: 284 -> 412 Target range: 301617 -> 302163 285 : GluValCysLeuValGluPheLeuGlyCysThrLeuAsnIleCysLeuLeuGlyTyrT : 304 .!.:!!||| ||| ... ||||||||| ! !!!||| !! HisLeuCysAlaValIleLysPheGluSerThrLeuAsnAlaLysPheLeuArgValI 301618 : CATCTCTGCgctgtaattaaatttgaatctACTTTAAATGCAAAGTTTTTACGAGTAA : 301675 305 : yrPheIleThrGlyLeuGluThrAlaAspThrAlaArgPheValThrPheAlaLeuLe : 323 !! .!! !! !! !:!!!.!::!|||||| ! !.!.:!!|||||| ! !|| le***Phe***GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLe 301676 : TTTGATTTTAGGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCT : 301732 324 : uPheIleSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGlnLeuLeuThr : 342 |!!.! |||||||||||||||||||||||||||||||||||||||:!!:!!|||:!! uLeuThrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSer 301733 : GTTAACGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCC : 301789 343 : AsnHis >>>> Target Intron 1 >>>> CysHisGlnIleGlyGluIleSe : 352 .!.!!. 80 bp ||| !|||||||||..! !|| GluGln++ ++CysSerGlnIleGlySerAlaSe 301790 : GAACAGgt.........................agTGTAGCCAAATTGGTTCAGCATC : 301899 353 : rTyrThrIleAspTrpTyrArgIleProGlyAlaGlnAlaArgPheLeuIleLeuLeu : 371 |||| !||||||||||||!.!:!!|||!.! !::!||| ! !|||||||||||| rTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAspLeuIleLeuLeu 301900 : GTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGATCTTATTCTACTT : 301956 372 : IleAlaIleAlaAsnArgProValThrIleThrAlaGlyLysIleValGlnLeuSerP : 391 ! !!.!|||:!!.!. !||| !! !:!!|||||||||||||||:!!.!.||||||! SerValIleSerGlnTyrProProLysLeuThrAlaGlyLysIleIleAspLeuSerL 301957 : AGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAATCGACTTATCCT : 302016 392 : heProCysPheArgAsp >>>> Target Intron 2 >>>> ValLeuLysAla : 400 !. ! |||!!!..! 82 bp |||:!!|||.!! euAsnThrPheSerSer++ ++ValValLysThr 302017 : TGAATACATTCAGCTCTgt.........................agGTGGTGAAAACA : 302125 401 : AlaLeuAlaTyrLeuAsnMetLeuArgLysValThr : 412 :!!:!!!.!|||||||||:!:||||||! !|||||| SerValValTyrLeuAsnLeuLeuArgThrValThr 302126 : TCGGTGGTGTACTTGAATTTACTGCGAACAGTTACA : 302163 vulgar: gi|528747938|gb|AGS43064.1| 284 412 . KQ414889.1 301617 302163 + 234 M 60 180 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 78 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 301618 302163 234 + . gene_id 19 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 301618 301797 . + . KQ414889.1 exonerate:protein2genome:local exon 301618 301797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 301798 301799 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 301798 301877 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 301876 301877 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301878 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301878 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302163 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302163 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 301618 302163 234 + . alignment_id 19 ; Query gi|528747938|gb|AGS43064.1| ; Align 301618 285 180 ; Align 301878 345 156 ; Align 302116 397 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 213 Query range: 312 -> 412 Target range: 272851 -> 273302 313 : AspThrAlaArgPheValThrPheAlaLeuLeuPheIleSerPheThrPheAsnIleP : 332 ||| ! !!!!.!...!|||!:! !:!!:!!.!!||||||.!.||||||||||||| AspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerMetThrPheAsnIleP 272852 : GATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCATgacttttaacattt : 272909 333 : heIlePheCysTyrIleGlyGlnLeuLeuThrAsnHis >>>> Target Intron : 345 ||||| ||||||||||||:!!:!!||||||.!.... 70 bp heIleValCysTyrIleGlyGluIleLeuThrGluArg++ 272910 : ttatagtATGTTACATCGGCGAAATATTAACGGAGAGGgt.................. : 272950 346 : 1 >>>> CysHisGlnIleGlyGluIleSerTyrThrIleAspTrpTyrArgIleP : 361 ||| :::|||||||||:!! !|||! !! :!!|||||| !:!!| ++CysLysLysIleGlyGluValValTyrMetThrAsnTrpTyrTyrLeuP 272951 : .......agtgtaaaaaaattggcGAGGTAGTTTACATGACGAACTGGTACTATTTAC : 273066 362 : roGlyAlaGlnAlaArgPheLeuIleLeuLeuIleAlaIleAlaAsnArgProValTh : 380 ||||| !.!. !! ! !|||||||||:!!|||:!!! !..!!:! ! !:!!! roGlyLysAspIleLeuAspLeuIleLeuIleIleSerArgCysSerValValIleLy 273067 : CCGGCAAAGATATCCTCGATCTGATTTTGATCATCTCAAGATGCAGTGTTGTGATTAA : 273123 381 : rIleThrAlaGlyLysIleValGlnLeuSerPheProCysPheArgAsp >>>> Ta : 397 !||||||||||||!:!||||||! :!!||| ! ! ||| !!||| sIleThrAlaGlyArgIleValProMetSerValTyrThrPheGlyAsp++ 273124 : AATCACCGCTGGCAGGATAGTTCCCATGTCTGTGTACACGTTCGGCGATgt....... : 273176 398 : rget Intron 2 >>>> ValLeuLysAlaAlaLeuAlaTyrLeuAsnMetLeuAr : 409 81 bp |||:!!|||::!|||!!!|||||||||||||||||||| ++ValMetLysSerAlaPheAlaTyrLeuAsnMetLeuAr 273177 : ..................aggtGATGAAAAGTGCGTTCGCGTACTTAAATATGCTACG : 273291 410 : gLysValThr : 412 |:!!..!||| gGlnThrThr 273292 : ACAAACGACA : 273302 vulgar: gi|528747938|gb|AGS43064.1| 312 412 . KQ414889.1 272851 273302 + 213 M 32 96 5 0 2 I 0 66 3 0 2 M 52 156 5 0 2 I 0 77 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272852 273302 213 + . gene_id 20 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 272852 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272852 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 272948 272949 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 272948 273017 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 273016 273017 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273018 273173 . + . KQ414889.1 exonerate:protein2genome:local exon 273018 273173 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 273174 273175 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 273174 273254 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 273253 273254 . + . intron_id 1 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 273255 273302 . + . KQ414889.1 exonerate:protein2genome:local exon 273255 273302 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272852 273302 213 + . alignment_id 20 ; Query gi|528747938|gb|AGS43064.1| ; Align 272852 313 96 ; Align 273018 345 156 ; Align 273255 397 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 197 Query range: 295 -> 397 Target range: 305063 -> 305783 296 : LeuAsnIleCysLeuLeuGlyTyrTyrPheIleThrGlyLeu-GluThrAlaAspThr : 314 :!!:!!:!! ! :!!||||||::: |||:::|||||||||#|||!:!::!:!!||| MetAspLeuGlyValLeuGlyPheIlePheValThrGlyLeu#GluSerSerAsnThr 305064 : ATGGACTTAGGAGTTCTTGgttttatatttgtaacaGGATTGGGAGAGCAGTAATACC : 305119 315 : AlaArgPheValThrPheAlaLeuLeuPheIleSerPheThrPheAsnIlePheIleP : 334 !.!!!!.!!..!|||!:!.!!:!!|||.!.|||||| ! ||||||||||||||||||! ValSerLeuThrThrTyrThrValLeuLeuIleSerValThrPheAsnIlePheIleL 305120 : GTTAGTCTTACAACATATACAGTGTTACTGATATCTGTAACATTTAATATATTCATAT : 305179 335 : heCysTyrIleGlyGlnLeuLeuThrAsnHis >>>> Target Intron 1 >>> : 345 !.||||||||||||:!!:!!|||! !.!. ! 413 bp euCysTyrIleGlyGluIleLeuMetGluLys++ 305180 : TATGCTACATTGGTGAGATTCTTATGGAAAAGgt........................ : 305214 346 : > CysHisGlnIleGlyGluIleSerTyrThrIleAspTrpTyrArgIleProGlyA : 363 !! !...:!!||| ! !!!!!:!! !|||..!||||||!.!:!!||| ! ++SerSerSerValGlyLeuSerCysPheMetIleSerTrpTyrHisLeuProThrL 305215 : .agAGCAGTAGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTTACCGACTA : 305679 364 : laGlnAlaArgPheLeuIleLeuLeuIleAlaIleAlaAsnArgProValThrIleTh : 382 ! ! !!.! !|||||||||:!!||||||!!::!!!:!!.!|||!.!! !|||!: ysThrIleHisGlyLeuIleLeuIleIleAlaMetSerSerAsnProAlaLysIleSe 305680 : AGACGATACATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCTAAAATCAG : 305736 383 : rAlaGlyLysIleValGlnLeuSerPheProCysPheArgAspVal : 397 !|||||||||:!!|||.!.||||||!!. !! ||| !!:!!||| rAlaGlyLysValValAspLeuSerLeuSerThrPheGlyAsnVal 305737 : TGCTGGTAAAGTAGTTGATTTATCTTTATCCACATTTGGAAACGTG : 305783 vulgar: gi|528747938|gb|AGS43064.1| 295 397 . KQ414889.1 305063 305783 + 197 M 14 42 F 0 1 M 35 105 5 0 2 I 0 409 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 305064 305783 197 + . gene_id 21 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 305064 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305064 305211 . + . insertions 0 ; deletions 0 ; frameshifts 1 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305783 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305783 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 305064 305783 197 + . alignment_id 21 ; Query gi|528747938|gb|AGS43064.1| ; Align 305064 296 42 ; Align 305107 310 105 ; Align 305625 345 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 192 Query range: 274 -> 397 Target range: 234524 -> 235147 275 : PheValThrArgValGluAspValLeuAsnGluValCysLeuValGluPheLeuGlyC : 294 |||:!! !!.!:!!|||:!!|||:!!||| !:!!||||||||||||!!.:!!|||| PheIleArgAsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuValGlyC 234525 : TTTATACGGAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGAT : 234582 295 : ysThrLeuAsnIleCysLeuLeuGlyTyrTyrPheIleThrGlyLeuGluThrAlaAs : 313 |||||||||||!!:|||:!!|||! !||||||!!.:!!|||! !! ! ||| ysThrLeuAsnMetCysMetLeuGluTyrTyrLeuLeuThrValArgPheThrAsnLy 234583 : GCACGTTGAACATGTGCATGCTCGAGTATTATTTACTCACGGTACGTTTTactaataa : 234639 314 : pThrAlaArgPheValThrPheAlaLeuLeuPheIleSer{Ph} >>>> Target : 327 |||... ::: ... :::... !!{ } 18 sIleLeuArgIle***SerAsn***PheLysTyrPheArg{Ly}++ 234640 : aattcttcgaatttaatcaaactaatttaaatactttaGA{AA}gt............ : 234685 328 : Intron 1 >>>> {e}ThrPheAsnIlePheIlePheCysTyrIleGlyGlnLeuL : 341 0 bp { }|||||||||||||||||||||||||||||||||:!! !| +-{s}ThrPheAsnIlePheIlePheCysTyrIleGlyGluThrL 234686 : .............at{G}ACATTtaatatattcatattttgttACATCGGAGAGACGC : 234903 342 : euThrAsnHisCysHisGlnIle{Gl} >>>> Target Intron 2 >>>> {y : 349 |||||.!.!!. ..! !{ } 74 bp {! euThrGluGlnValGlySer***{Ly}++ -+{s 234904 : TTACAGAGCAGGTAGGATCATGA{AA}gt.........................gg{A : 235003 350 : }GluIleSerTyrThrIleAspTrpTyrArgIleProGlyAlaGlnAlaArgPheLeu : 368 }|||! ! !|||! !! !!!:|||||||||:!!||| ! ! |||! ! !||| }GluLysValTyrMetThrGluTrpTyrArgLeuProHisLysThrAlaLeuGlyLeu 235004 : }GAAAAAGTGTACATGACCGAATGGTACCGGTTACCTCATAAAACTGCTCTCGGTTTG : 235058 369 : IleLeuLeuIleAlaIleAlaAsnArgProValThrIleThrAlaGlyLysIleValG : 388 :!!:!!:!!|||:!!! :!!!:!! ! !:!!! !|||||||||||||||.!!:!!| ValMetIleIleSerArgSerSerMetValIleLysIleThrAlaGlyLysPheLeuG 235059 : GTAATGATCATCTCCAGGTCGAGCATGGTGATAAAAATCACCGCTGGAAAATTCCTAC : 235118 389 : lnLeuSerPheProCysPheArgAspVal : 397 ||:!!||| !! !! ||| !!|||||| lnMetSerValAlaThrPheGlyAspVal 235119 : AAATGTCTGTCGCAACATTTGGCGATGTG : 235147 vulgar: gi|528747938|gb|AGS43064.1| 274 397 . KQ414889.1 234524 235147 + 192 M 52 156 S 0 2 5 0 2 I 0 176 3 0 2 S 1 1 M 21 63 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234525 235147 192 + . gene_id 22 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234525 234682 . + . KQ414889.1 exonerate:protein2genome:local exon 234525 234682 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234683 234684 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234683 234862 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234861 234862 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 234863 234928 . + . KQ414889.1 exonerate:protein2genome:local exon 234863 234928 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234929 234930 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234929 235002 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 235001 235002 . + . intron_id 1 ; splice_site "GG" KQ414889.1 exonerate:protein2genome:local cds 235003 235147 . + . KQ414889.1 exonerate:protein2genome:local exon 235003 235147 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234525 235147 192 + . alignment_id 22 ; Query gi|528747938|gb|AGS43064.1| ; Align 234525 275 156 ; Align 234864 328 63 ; Align 235004 350 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 176 Query range: 2 -> 124 Target range: 299623 -> 299989 3 : HisLysArgGlyTrpAlaLysIleLysSerAspIleProAsnLysAsnTyrAspThrA : 22 :!! ! |||..!!! ::!!..:!! ! .!!.!.:!: !||| ! :!!|||.!.!.!| TyrAspArgSerCysSerSerValAspGlyGlnLeuArgAsnTyrHisTyrGlnAsnA 299624 : TACGATCGATCCTGTAGCAGTGTTGACGGCCAATTGAGGAATTACCATTACCAAAATG : 299681 23 : spValGluTyrAlaIleLysLeuAsnArgTrpLeuLeuLysProIleGlyValTrpPr : 41 ||:!!.!.|||.!!:!::!!:!! !!:!|||||||||||||||||||||||||||! spIleHisTyrThrLeuGlnMetCysGlnTrpLeuLeuLysProIleGlyValTrpAr 299682 : ACATACATTACACGCTGCAAATGTGCCAATGGTTGTTGAAACCTATCGGAGTATGGCG : 299738 42 : o<->LeuGluLeuSerSerSerArgThrGluArgIleValThrIleThrThrAlaVal : 59 ! |||!!:! ! !!||||||!:! !|||!.!:!!|||:!!||| ..! !:!! gLeuLeuAspGlnArgSerSerLysLeuGluHisLeuValSerIle---ValLeuMet 299739 : ATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCTCGTCTCGATC---GTTCTCATG : 299792 60 : ThrCysCysLeuLeuMetSerPheValLeuThrIleProCysCysIleGluMetPheS : 79 ||| |||!!!! !! !||| !!:!!..!:!:|||! ! !! ! ! !!:|||! ThrIleCysPheSerSerLeuPhePheIleValLeuProSerGlyHisTyrIlePheP 299793 : ACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCATCCGGTCATTACATCTTCT : 299852 80 : erSerGlnLysAspPheLysSerArgLeuGluMetLeuGlyProSerSerPheCysVa : 98 !:!!:!!|||..!.!. ! !!:!:!!:!!:!:!!!|||||| !.!!||||||:! heAlaGluLysSerIleHisValLysValLysValPheGlyProValGlyPheCysLe 299853 : TCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCGGTCCGGTTGGTTTTTGCCT : 299909 99 : lMetAlaValIleLysPhePhePhePheValIleArgGlyLysGluIleArgPheCys : 117 ! :!!:!!:!!|||!:!! !!:!.!! !:!:!.!||| ! !.!!..! ||| uSerSerIleValLysTyrCysTyrLeuCysLeuAsnGlyGlyAlaPheGluArgCys 299910 : CTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGGTGGCGCGTTCGAACGATGC : 299966 118 : IleAspSerValValThrAsp : 124 |||.!. !|||! !! !||| IleGlnHisValGluArgAsp 299967 : ATCCAACACGTCGAGAGAGAC : 299989 vulgar: gi|528747938|gb|AGS43064.1| 2 124 . KQ414889.1 299623 299989 + 176 M 39 117 G 0 3 M 14 42 G 1 0 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299624 299989 176 + . gene_id 23 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299624 299989 . + . KQ414889.1 exonerate:protein2genome:local exon 299624 299989 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 299624 299989 176 + . alignment_id 23 ; Query gi|528747938|gb|AGS43064.1| ; Align 299624 3 117 ; Align 299744 42 42 ; Align 299786 57 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 343 -> 408 Target range: 244655 -> 244939 344 : HisCysHisGlnIleGlyGluIleSerTyrThrIleAspTrpTyrArgIleProGlyA : 363 !!.||| :!!:!!||||||:!: !|||! !! !||||||||| !:!:||| ! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 244656 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 244713 364 : laGlnAlaArgPheLeuIleLeuLeuIleAlaIleAlaAsnArgProValThrIleTh : 382 !::! !! ! !|||||||||:!!||| ! !:!!|||! ! !||| !||||| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnMetValValGluIleTh 244714 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACATGGTCGTTGAAATCAC : 244770 383 : rAlaGlyLysIleValGlnLeuSerPheProCysPheArgAsp >>>> Target I : 397 ||||||||||:!!:!!!!.:!!|||.!! ! ||| !!||| 89 rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAsp++ 244771 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATgt............. : 244817 398 : ntron 1 >>>> ValLeuLysAlaAlaLeuAlaTyrLeuAsnMetLeu : 408 bp |||:!!|||.!!!.!!!!|||||||||||||||||| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeu 244818 : ............agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTT : 244939 vulgar: gi|528747938|gb|AGS43064.1| 343 408 . KQ414889.1 244655 244939 + 146 M 53 159 5 0 2 I 0 85 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 244656 244939 146 + . gene_id 24 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 244656 244814 . + . KQ414889.1 exonerate:protein2genome:local exon 244656 244814 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 244815 244816 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 244815 244903 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 244902 244903 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 244904 244939 . + . KQ414889.1 exonerate:protein2genome:local exon 244904 244939 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 244656 244939 146 + . alignment_id 24 ; Query gi|528747938|gb|AGS43064.1| ; Align 244656 344 159 ; Align 244904 397 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 143 Query range: 343 -> 412 Target range: 258462 -> 258738 344 : HisCysHisGlnIleGlyGluIleSerTyrThrIleAspTrpTyrArgIleProGlyA : 363 !!.||| ! :!!:!!|||!!::!: !|||! !! !||||||||| !:!!|||! ! GlnCysLysLysValGlyAspValValTyrMetThrAspTrpTyrTyrLeuProAspL 258463 : CAGTGCAAGAAAGTTGGCGACGTGGTTTATATGACAGACTGGTATTATCTACCTGACA : 258520 364 : laGlnAlaArgPheLeuIleLeuLeuIleAlaIleAlaAsnArgProValThrIleTh : 382 !::! !! ! !|||||||||:!!|||||| !:!!!:! ! !||| !||||| ysArgIleLeuAspLeuIleLeuValIleAlaArgSerSerValValValGlnIleTh 258521 : AAAGAATACTCGATTTAATTTTGGTAATCGCACGATCGAGCGTGGTCGTTCAAATCAC : 258577 383 : rAlaGlyLysIleValGlnLeuSerPheProCysPheArgAsp >>>> Target I : 397 ||||||||||... ...::!|||.!! ! |||!!!||| 69 rAlaGlyLysPhePheHisMetSerIleTyrThrPheSerAsp++ 258578 : CGCGggaaaattctttcacatGTCCATTTACACATTCAGCGATgt............. : 258624 398 : ntron 1 >>>> ValLeuLysAlaAlaLeuAlaTyrLeuAsnMetLeuArgLysVa : 411 bp |||:!!|||.!!:!!!!!||||||||||||:!:||||||:!!|| ++ValIleLysThrSerPheAlaTyrLeuAsnLeuLeuArgGlnVa 258625 : ............agGTAATAAAAACCTCTTTCGCGTATTTGAATTTACTGCGTCAAGT : 258733 412 : lThr : 412 |:!! lSer 258734 : ATCG : 258738 vulgar: gi|528747938|gb|AGS43064.1| 343 412 . KQ414889.1 258462 258738 + 143 M 53 159 5 0 2 I 0 65 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258463 258738 143 + . gene_id 25 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 258463 258621 . + . KQ414889.1 exonerate:protein2genome:local exon 258463 258621 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 258622 258623 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 258622 258690 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 258689 258690 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 258691 258738 . + . KQ414889.1 exonerate:protein2genome:local exon 258691 258738 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258463 258738 143 + . alignment_id 25 ; Query gi|528747938|gb|AGS43064.1| ; Align 258463 344 159 ; Align 258691 397 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 339 -> 397 Target range: 214848 -> 215022 340 : LeuLeuThrAsnHisCysHisGlnIleGlyGluIleSerTyrThrIleAspTrpTyrA : 359 :!!:!! !.!.!!.||| ! :!!:!!||||||:!!||||||! !|||!!:||||||| IleMetLeuGlnGlnCysLysLysValGlyGluValSerTyrMetIleGluTrpTyrA 214849 : ATTATGTTACAACAGTGCAAAAAGGTCGGAGAAGTATCGTACATGATCGAATGGTACC : 214906 360 : rgIleProGlyAlaGlnAlaArgPheLeuIleLeuLeuIleAlaIleAlaAsnArgPr : 378 ||:!:|||||| !:!! !! !! !! !||||||:!!!!:|||!!::!!||| ! ! rgLeuProGlyAsnLysLysLeuCysCysIleLeuIleMetAlaMetSerAsnSerSe 214907 : GATTGCCAGGTAACAAAAAGCTCTGTTGCATTTTGATCATGGCAATGTCCAATTCATC : 214963 379 : oValThrIleThrAlaGlyLysIleValGlnLeuSerPheProCysPheArgAspVal : 397 !|||! !.!!|||||||||!!.!!:|||:!!||||||.!! ! !|||!!!..!||| rValLysPheThrAlaGlyAsnMetValGluLeuSerIleSerThrPheSerSerVal 214964 : CGTCAAATTCACAGCTGGAAACATGGTAGAACTGTCTATCAGCACTTTCAGCAGTGTA : 215020 vulgar: gi|528747938|gb|AGS43064.1| 339 397 . KQ414889.1 214848 215022 + 137 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214849 215022 137 + . gene_id 26 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214849 215022 . + . KQ414889.1 exonerate:protein2genome:local exon 214849 215022 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214849 215022 137 + . alignment_id 26 ; Query gi|528747938|gb|AGS43064.1| ; Align 214849 340 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 326 -> 397 Target range: 224445 -> 224658 327 : PheThrPheAsnIlePheIlePheCysTyrIleGlyGlnLeuLeuThrAsnHisCysH : 346 ||| ... ::: !!:! !|||.!! !..!|||!!! ! ...|||. PheLysIleIleLeuHisHisTyrHisTyrPheLeuSerLeuPhePheProGlnCysG 224446 : tttaaaattattcttcacCACTACCACTATTTTTTATCGCTATTTTTTCCtcagtgtg : 224503 347 : isGlnIleGlyGluIleSerTyrThrIleAspTrpTyrArgIleProGlyAlaGlnAl : 365 ..:::||||||::!:!:||||||! !|||||||||||||||:!: !!||| !:!! luLysIleGlyGlnValSerTyrMetIleAspTrpTyrArgLeuThrGlyAsnLysLy 224504 : aaaaaattggacaAGTGTCGTACATGATCGACTGGTATCGGTTGACTGGAAATAAGAA : 224560 366 : aArgPheLeuIleLeuLeuIleAlaIleAlaAsnArgProValThrIleThrAlaGly : 384 !! !! !! !||||||:!!||||||!!::!!||| ! !!:!!! !:!:||||||||| sLeuCysCysIleLeuIleIleAlaMetSerAsnSerSerIleLysLeuThrAlaGly 224561 : ACTATGCTGCATTCTGATAATCGCGATGTCCAATTCTTCGATAAAATTGACAGCGGGA : 224617 385 : LysIleValGlnLeuSerPheProCysPheArgAspVal : 397 !!.!!:|||:!!|||!!!.!. !! !||| !!|||||| AsnMetValGluLeuCysLeuThrThrPheGlyAspVal 224618 : AACATGGTCGAACTGTGTCTAACCACTTTCGGTGACGTA : 224658 vulgar: gi|528747938|gb|AGS43064.1| 326 397 . KQ414889.1 224445 224658 + 136 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224446 224658 136 + . gene_id 27 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224446 224658 . + . KQ414889.1 exonerate:protein2genome:local exon 224446 224658 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224446 224658 136 + . alignment_id 27 ; Query gi|528747938|gb|AGS43064.1| ; Align 224446 327 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 271 -> 306 Target range: 260773 -> 260878 272 : LeuLeuArgPheValThrArgValGluAspValLeuAsnGluValCysLeuValGluP : 291 |||! !!!!|||:!!:!!|||:!!|||||||||:!!|||..!:!!|||!!!:!!|||! LeuCysSerPheIleSerArgIleGluAspValMetAsnArgIleCysPheLeuGluL 260774 : TTGTGCAGCTTCATATCGCGTATCGAGGATGTGATGAACCGGATATGCTTCCTGGAGT : 260831 292 : heLeuGlyCysThrLeuAsnIleCysLeuLeuGlyTyrTyrPheIle : 306 !.!!! !!|||||||||:!!|||||||||||||||||||||.!!:!! euPheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeu 260832 : TGTTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATATTCTT : 260878 vulgar: gi|528747938|gb|AGS43064.1| 271 306 . KQ414889.1 260773 260878 + 121 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 260774 260878 121 + . gene_id 28 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 260774 260878 . + . KQ414889.1 exonerate:protein2genome:local exon 260774 260878 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 260774 260878 121 + . alignment_id 28 ; Query gi|528747938|gb|AGS43064.1| ; Align 260774 272 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 343 -> 410 Target range: 264723 -> 265004 344 : HisCysHisGlnIleGlyGluIleSerTyrThrIleAspTrpTyrArgIleProGlyA : 363 !!.||| ! :!!:!!||||||:!: !|||! ! :!!|||||| !:!!||| ! GlnCysLysLysValGlyGluValValTyrMetSerAsnTrpTyrTyrLeuProTyrL 264724 : CAGTGTAAGAAAGTTGGTGAGGTGGTTTACATGTCGAATTGGTATTACTTACCCTACA : 264781 364 : laGlnAlaArgPheLeuIleLeuLeuIleAlaIleAlaAsnArgProValThrIleTh : 382 !.!. !! ! !|||||||||:!!||| !! !:!!!:! ! ! !!! !.!!|| ysAspIleLeuAspLeuIleLeuIleIleLeuArgSerSerValValPheLysPheTh 264782 : AAGATATCCTTGATCTGATTCTCATCATTTTAAGATCCAGCGTGGTGTTTAAATTCAC : 264838 383 : rAlaGlyLysIleValGlnLeuSerPheProCysPheArgAsp >>>> Target I : 397 |||||||||||||:!!!!.:!!|||.!. ! |||!!!||| 80 rAlaGlyLysIleLeuHisMetSerMetTyrThrPheSerAsp++ 264839 : CGCTGGAAAGATACTTCACATGTCCATGTACACATTCAGTGACgt............. : 264885 398 : ntron 1 >>>> ValLeuLysAlaAlaLeuAlaTyrLeuAsnMetLeuArgLys : 410 bp |||:!!|||:!!:!!!!!.!!|||||||||:!:||||||:!! ++ValIleLysSerSerPheThrTyrLeuAsnLeuLeuArgGln 264886 : ............aggTAATCAAATCCTCTTTCACGTACTTAAACTTACTTCGCCAA : 265004 vulgar: gi|528747938|gb|AGS43064.1| 343 410 . KQ414889.1 264723 265004 + 120 M 53 159 5 0 2 I 0 76 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 264724 265004 120 + . gene_id 29 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 264724 264882 . + . KQ414889.1 exonerate:protein2genome:local exon 264724 264882 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 264883 264884 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 264883 264962 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264961 264962 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 264963 265004 . + . KQ414889.1 exonerate:protein2genome:local exon 264963 265004 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 264724 265004 120 + . alignment_id 29 ; Query gi|528747938|gb|AGS43064.1| ; Align 264724 344 159 ; Align 264963 397 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 273 -> 306 Target range: 224137 -> 224236 274 : ArgPheValThrArgValGluAspValLeuAsnGluValCysLeuValGluPheLeuG : 293 ||||||:!!|||!.!..!||| ! !.!|||.!.:!!|||! !!!||||||||||||| ArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValGluPheLeuG 224138 : AGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGGAATTTCTAG : 224195 294 : lyCysThrLeuAsnIleCysLeuLeuGlyTyrTyrPheIle : 306 |||||! !||||||||||||||||||||||||||| !!||| lyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIle 224196 : GCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATT : 224236 vulgar: gi|528747938|gb|AGS43064.1| 273 306 . KQ414889.1 224137 224236 + 117 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224138 224236 117 + . gene_id 30 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224138 224236 . + . KQ414889.1 exonerate:protein2genome:local exon 224138 224236 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224138 224236 117 + . alignment_id 30 ; Query gi|528747938|gb|AGS43064.1| ; Align 224138 274 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 117 Query range: 343 -> 403 Target range: 238625 -> 238805 344 : HisCysHisGlnIleGlyGluIleSerTyrThrIleAspTrpTyrArgIleProGlyA : 363 !!.||| :!!:!!||||||:!: !|||! !! !||||||||| !:!:||| ! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 238626 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 238683 364 : laGlnAlaArgPheLeuIleLeuLeuIleAlaIleAlaAsnArgProValThrIleTh : 382 !::! !! ! !|||||||||:!!||| ! !:!!||| ! !|||! !:!!|| rgArgIleLeuAspLeuIleLeuIleIleLysArgSerAsnValValValLysValTh 238684 : GAAGAATCCTCGATTTAATTCTGATCATTAAACGATCGAACGTGGTCGTTAAAGTCAC : 238740 383 : rAlaGlyLysIleValGlnLeuSerPheProCysPheArgAspValLeuLysAlaAla : 401 ||||||||||:!!:!!!!.:!!|||.!! ! ||| !!|||||| !:!!.!! ! rAlaGlyLysValLeuHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 238741 : CGCTGGAAAAGTATTACATATGTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 238797 402 : LeuAla : 403 |||||| LeuAla 238798 : CTTGCT : 238805 vulgar: gi|528747938|gb|AGS43064.1| 343 403 . KQ414889.1 238625 238805 + 117 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 238626 238805 117 + . gene_id 31 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 238626 238805 . + . KQ414889.1 exonerate:protein2genome:local exon 238626 238805 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 238626 238805 117 + . alignment_id 31 ; Query gi|528747938|gb|AGS43064.1| ; Align 238626 344 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 346 -> 406 Target range: 292398 -> 292578 347 : GlnIleGlyGluIleSerTyrThrIleAspTrpTyrArgIleProGlyAlaGlnAlaA : 366 :!!|||!.!.!. !|||||| !! !!!:||||||!.!:!:||| !! !:!!|||| GluIleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgArgLysAlaA 292399 : GAAATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGGCTC : 292456 367 : rgPheLeuIleLeuLeuIleAlaIleAlaAsnArgProValThrIleThrAlaGlyLy : 385 || !:!!:!!|||:!!:!!||||||.!!!!.!.!|||:!!! !:!!||||||||||| rgAspIleValLeuValLeuAlaIleThrLysHisProIleLysLeuThrAlaGlyLy 292457 : GTGACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGGCAA : 292513 386 : sIleValGlnLeuSerPheProCysPheArgAspValLeuLysAlaAlaLeuAlaTyr : 404 |||| !! ||||||!!. ! !||| !!! !|||! !:!!:!! !|||!.!! sIlePheValLeuSerLeuAsnThrPheGlyAlaValArgGluSerLysLeuValLeu 292514 : AATATTCGTTCTCTCGTTGAACACTTTTGGCGCTGTACGTGAATCAAAACTAGTCTTG : 292570 405 : LeuAsn : 406 :!!:!! IleHis 292571 : ATACAC : 292578 vulgar: gi|528747938|gb|AGS43064.1| 346 406 . KQ414889.1 292398 292578 + 115 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292399 292578 115 + . gene_id 32 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 292399 292578 . + . KQ414889.1 exonerate:protein2genome:local exon 292399 292578 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292399 292578 115 + . alignment_id 32 ; Query gi|528747938|gb|AGS43064.1| ; Align 292399 347 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 343 -> 402 Target range: 254271 -> 254448 344 : HisCysHisGlnIleGlyGluIleSerTyrThrIleAspTrpTyrArgIleProGlyA : 363 !!.||| :!!:!!||||||:!: !|||! !! !||||||||| !:!:||| ! GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnA 254272 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGA : 254329 364 : laGlnAlaArgPheLeuIleLeuLeuIleAlaIleAlaAsnArgProValThrIleTh : 382 !::! !! ! !|||||||||:!!|||.!! !:!!||| ! !||| !||||| rgArgIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleTh 254330 : GAAGAATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCAC : 254386 383 : rAlaGlyLysIleValGlnLeuSerPheProCysPheArgAspValLeuLysAlaAla : 401 ||||||||||||| ...:::|||.!! ! ||| !!|||||| !:!!.!! ! rAlaGlyLysIlePheHisMetSerLeuTyrThrPheGlyAspValSerGluThrAsn 254387 : CGctggaaaaatattccatatgTCGCTTTACACGTTCGGCGATGTAAGTGAAACTAAT : 254443 402 : Leu : 402 ||| Leu 254444 : CTT : 254448 vulgar: gi|528747938|gb|AGS43064.1| 343 402 . KQ414889.1 254271 254448 + 114 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 254272 254448 114 + . gene_id 33 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 254272 254448 . + . KQ414889.1 exonerate:protein2genome:local exon 254272 254448 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 254272 254448 114 + . alignment_id 33 ; Query gi|528747938|gb|AGS43064.1| ; Align 254272 344 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 342 -> 397 Target range: 277548 -> 277713 343 : AsnHisCysHisGlnIleGlyGluIleSerTyrThrIleAspTrpTyrArgIleProG : 362 ...!!.||| ! :!!:!!||||||:!: !|||! !! :!!|||||| !:!!|||! ArgGlnCysLysLysValGlyGluValValTyrMetThrAsnTrpTyrTyrLeuProA 277549 : CGACAGTGTAAAAAAGTTGGTGAGGTGGTTTATATGACGAATTGGTATTATTTACCCG : 277606 363 : lyAlaGlnAlaArgPheLeuIleLeuLeuIleAlaIleAlaAsnArgProValThrIl : 381 ! !.!. !! ! !|||:!!|||:!!|||:!!! !:!!!:! ::: || spLysAspIleLeuAsnLeuLeuLeuIleIleSerArgSerSerLeuValIleLysIl 277607 : ACAAAGATATTCTCAATTTGCTTCTCATCATTTCAAGATCTAGCctggtaattaaaat : 277663 382 : eThrAlaGlyLysIleValGlnLeuSerPheProCysPheArgAspVal : 397 |||||||||||||::::::|||:::||| ! ! ||| !!|||||| eThrAlaGlyLysLeuIleGlnMetSerValTyrThrPheGlyAspVal 277664 : taccgctggaaaattaattcaaatgtCCGTGTACACGTTCGGCGATGTA : 277713 vulgar: gi|528747938|gb|AGS43064.1| 342 397 . KQ414889.1 277548 277713 + 110 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277549 277713 110 + . gene_id 34 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277549 277713 . + . KQ414889.1 exonerate:protein2genome:local exon 277549 277713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277549 277713 110 + . alignment_id 34 ; Query gi|528747938|gb|AGS43064.1| ; Align 277549 343 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747914|gb|AGS43052.1| odorant receptor Or2c [Cephus cinctus] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 276 -> 332 Target range: 196633 -> 196801 277 : AspValLeuGlnAsnGluSerGlnAlaValAlaTyrAlaAlaTyrPheMetProTrpT : 296 |||:!!!!! .!.:!!|||:!! !|||!.! ! .!!:!!|||||||||||||||| AspLeuPheValGluLysSerGluArgValGlyGluThrSerTyrPheMetProTrpT 196634 : gaTTTATTCGTTGAAAAGAGCGAAAGAGTAGGCGAAACGTCGTACTTCATGCCGTGGT : 196691 297 : yrArgCysSerArgAspValLysLysSerThrGluIleIleIleMetArgGlyGlnAr : 315 || ! ! !! !|||:!! |||!:!! !..!! ||||||:!:|||!.!...!. yrAspLeuProAspAspLeuAlaLysAsnIleArgThrIleIleLeuArgAlaSerHi 196692 : ACGATCTTCCGGACGATTTAGCCAAGAATATAAGAACGATCATACTAAGAGCCAGTCA : 196748 316 : gValValArgLeuThrAlaGlyAsnPheValAspLeuSerLeuGluThrPhe : 332 ! ! !!!!|||:!!!.!!.!!!.!!. !!||||||||||||:!!.!!||| sProSerSerLeuSerGlyAlaLysLeuPheAspLeuSerLeuGlnAlaPhe 196749 : TCCGTCAAGTTTGTCTGGCGCCAAGTTGTTCGATCTTTCGCTTCAAGCATTT : 196801 vulgar: gi|528747914|gb|AGS43052.1| 276 332 . KQ414889.1 196633 196801 + 101 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 196634 196801 101 + . gene_id 1 ; sequence gi|528747914|gb|AGS43052.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 196634 196801 . + . KQ414889.1 exonerate:protein2genome:local exon 196634 196801 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 196634 196801 101 + . alignment_id 1 ; Query gi|528747914|gb|AGS43052.1| ; Align 196634 277 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747922|gb|AGS43056.1| odorant receptor Or2g [Cephus cinctus] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 559 Query range: 0 -> 279 Target range: 1697554 -> 1699971 1 : MetLysLeuValGlyIleTrpValProLysAspAsnAsnGluGlnTrpIleMetAs : 19 ||||||:!!||||||:!!|||:!! !!||||||!:!!!.|||:!! ! ! .. MetLysIleValGlyLeuTrpLeuAlaLysAspSerLysGluGluArgLysArgAr 1697555 : ATGAAGATCGTCGGTCTTTGGTTAGCGAAAGACAGCAAGGAGGAACGCAAGCGTCG : 1697609 20 : nCysAlaLeuSerTyrThrIleLeuValIleLeuLeuAlaValAlaIleGluGlyP : 38 .! !.!!|||! !||||||:!::!!!.!||||||!!!!.!||| !:!::!! ! gTyrThrLeuIleTyrThrValValAlaIleLeuPheGlyValTrpValGlnPheA 1697610 : GTACACTTTGATCTATACGGTGGTCGCGATTTTGTTTGGAGTGTGGGTGCAGTTCA : 1697666 39 : heAspIleTyrTyrCysTrpGlyAsnPhe{T} >>>> Target Intron 1 > : 48 |||.!!||||||! !||| !||||||{ } 849 bp rgAspPheTyrTyrSerTrpProAsnPhe{G}+- 1697667 : GAGACTTCTATTACTCCTGGCCGAATTTT{G}gc...................... : 1697699 49 : >>> {yr}AlaThrThrTyrThrAlaCysAlaThrMetProValIleIleValLe : 64 {! } ! !.!!|||||||||||| !! !:!: !:!!|||!!:||||| +-{lu}AspCysAlaTyrThrAlaCysAsnIleLeuCysLeuIleMetValLe 1697700 : ...at{ag}gACTGTGCTTACACCGCTTGTAACATTCTCTGCCTGATTATGGTACT : 1698593 65 : uAlaLysIlePhePheLeuLeuLeuArgArgLysLeuValMetGluLeuIleGluP : 83 | !|||:!:||| !!:!!!!!:!!!.!|||||| ! !!!!:||||||::: : uLeuLysLeuPheValValPheIleHisArgLysGluPheIleGluLeuLeuValT 1698594 : GTTAAAGCTGTTCGTTGTATTCATACACAGGAAAGAATTCATCGAACTgcttgtat : 1698650 84 : heThrGluLysAsnPheTrpGlnGlyAspTyrAspSerTyrGlyMetSerValLeu : 101 :: ||||||||||||.!. !:!!||||||!!! !!! !:!: !:!!||| yrMetTyrLysAsnPheTrpHisLeuAsnTyrAspCysAsnGluLeuLeuLeuLeu 1698651 : atatgtacaaaaatttttggcACCTCAATTACGATTGCAACGAACTACTACTGCTG : 1698704 102 : AspAspIleAspArgLysGlyValLeuLeuMetCysThrPheIlePhePheValGl : 120 .!.||| ! |||! .!!..!:!!! !!!: !.!!! !|||! !!.!|| GlnAspCysArgArgIleSerThrIleCysIleThrLeuIleAsnPheCysAlaGl 1698705 : CAAGACTGCAGAAGAATTAGCACTATATGTATCACGTTGATTAACTTCTGTGCTCA : 1698761 121 : nGlyThrValIleGlyTyrValLeuThrProIleIle{G} >>>> Target In : 133 |||||||:!!:!!.!!|||||||||||||||||||||{!} 232 nGlyThrIleValSerTyrValLeuThrProIleIle{A}++ 1698762 : AGGCACAATTGTCAGCTACGTGCTAACACCTATTATA{G}gt.............. : 1698803 134 : tron 2 >>>> {lu}AsnIleGlyLysAsnGluSerAspArgValLeuProVal : 146 bp { !}|||||||||:::|||...|||||||||||||||||| !! ++{la}AsnIleGlyArgAsnSerSerAspArgValLeuProPhe 1698804 : ...........ag{ca}aatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTC : 1699071 147 : ThrLeuTrpIleAsnIleProValThrThrThrProTyrPheGluIleCysPheVa : 165 !.!:!!|||:!!:!!:!:|||:!!:!!..!:!!||| !:!|||||| ||||| AsnMetTrpValAspLeuProLeuSerValSerProThrTyrGluIleValPheVa 1699072 : AACATGTGGGTTGATTTGCCGCTGTCTGTGTCACCAACGTACGAAATAGTGTTCGT : 1699128 166 : lMetGlu >>>> Target Intron 3 >>>> SerLeuThrIleValHisIl : 174 |:!::!! 499 bp !|||:!!:!: !|||:! lLeuGln++ ++ValLeuSerLeuTyrHisVa 1699129 : GCTTCAGgt.........................agGTTCTGTCTTTGTACCACGT : 1699654 175 : eGlyIleCysPhePheCysPheAspIlePheLeuCysIleLeuAsnIleHisAlaA : 193 !|||:!!|||!:!.!!|||||||||! !.!!||||||:!::!!|||:!:||||||| lGlyValCysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaA 1699655 : TGGTGTATGTTACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGG : 1699711 194 : laGlyGlnPheLysMetLeuGlnHisArgPheAlaLeuValTyrAspGlyAspAsn : 211 || !||||||:::!!:||||||:!!|||!!.:!! !:!! !||| !:!!!.. laThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArg 1699712 : CTACTCAATTTCGTATACTGCAATACAGGTTATCGAACTTGGGTGATACGAACAGG : 1699765 212 : LysGlnGluMetProIleThrAspLysLeuHisPheValLysAspSerGluGluIl : 230 ||||||! ! !! ! !..!!.. ! !.!. !::: !:!!|||.!. LysGlnValAspAspAsnGluSerSerAlaAlaLeuSerArgPheAlaGluAsnCy 1699766 : AAGCAAGTAGATGACAATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTG : 1699822 231 : eTyrIleLysPheLysAspCysValLysHisHisLysIleLeuIleAspTyrThrG : 249 !|||! !||||||:!!||||||::!!!.|||:!!! !! !||| ||| !. sTyrLysAlaPheLysAsnCysValArgGlnHisGlnAsnHisIleThrTyrCysH 1699823 : TTATAAGGCGTTTAAAAATTGCGTACGACAACATCAGAATCATATCACGTACTGTC : 1699879 250 : luLysValGlnSerValPheThrPheIleIleLeuCysGlnIleLeuIleSerSer : 267 !.!:!:!!.!...!:!!|||||| !!|||:!!||| ! !!.||||||:!!! !||| isArgLeuAsnGluIlePheThrValIleValLeuGlyHisIleLeuValPheSer 1699880 : ACAGATTGAACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGC : 1699933 268 : LeuMetMetThrMetAlaGlyPheGlnAlaLeuLeu : 279 |||:!!!!: !:!!!.!|||||||||!.!|||:!! LeuLeuIleCysLeuValGlyPheGlnValLeuVal 1699934 : CTTCTGATATGTCTGGTTGGATTCCAAGTGCTCGTA : 1699971 vulgar: gi|528747922|gb|AGS43056.1| 0 279 . KQ414915.1 1697554 1699971 + 559 M 47 141 S 0 1 5 0 2 I 0 845 3 0 2 S 1 2 M 84 252 S 0 1 5 0 2 I 0 228 3 0 2 S 1 2 M 34 102 5 0 2 I 0 495 3 0 2 M 112 336 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1697555 1699971 559 + . gene_id 1 ; sequence gi|528747922|gb|AGS43056.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1697555 1697696 . + . KQ414915.1 exonerate:protein2genome:local exon 1697555 1697696 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1697697 1697698 . + . intron_id 1 ; splice_site "GC" KQ414915.1 exonerate:protein2genome:local intron 1697697 1698545 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1698544 1698545 . + . intron_id 0 ; splice_site "at" KQ414915.1 exonerate:protein2genome:local cds 1698546 1698800 . + . KQ414915.1 exonerate:protein2genome:local exon 1698546 1698800 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1698801 1698802 . + . intron_id 2 ; splice_site "Gt" KQ414915.1 exonerate:protein2genome:local intron 1698801 1699032 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1699031 1699032 . + . intron_id 1 ; splice_site "Ag" KQ414915.1 exonerate:protein2genome:local cds 1699033 1699136 . + . KQ414915.1 exonerate:protein2genome:local exon 1699033 1699136 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699137 1699138 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699137 1699635 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1699634 1699635 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699636 1699971 . + . KQ414915.1 exonerate:protein2genome:local exon 1699636 1699971 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1697555 1699971 559 + . alignment_id 1 ; Query gi|528747922|gb|AGS43056.1| ; Align 1697555 1 141 ; Align 1698548 49 252 ; Align 1699035 134 102 ; Align 1699636 168 336 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747922|gb|AGS43056.1| odorant receptor Or2g [Cephus cinctus] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 554 Query range: 49 -> 373 Target range: 1710866 -> 1712651 50 : ThrThrTyrThrAlaCysAlaThrMetProValIleIleValLeuAlaLysIlePh : 68 ||| !!:! ! !|||.!! !:!! !!||||||!!: ! ! !||||||.! ThrLeuPheAspIleCysThrLeuLeuSerValIleMetProAlaIleLysIleIl 1710867 : ACACTGTTCGACATATGCACTCTTCTGTCGGTGATAATGCCCGCTATCAAAATAAT : 1710921 69 : ePheLeuLeuLeuArgArgLysLeuValMetGluLeuIleGluPheThrGluLysA : 87 !.!!|||!!!:!!!.!!:!:!! ! !!.!....||||||! !!:!||||||::!. eIleLeuPheIleAsnLysGluGluPhePheArgLeuIleValTyrThrGluArgG 1710922 : CATCCTGTTTATCAACAAGGAGGAGTTTTTCCGTTTGATCGTGTACACAGAGCGAC : 1710978 88 : snPheTrpGlnGlyAspTyrAspSerTyrGlyMetSerValLeuAspAspIleAsp : 105 !.||| !.!.|||||||||:!!..! !!! !! !!.!:!!:!! !||| ! ! lnPheMetAsnGlyAspTyrAsnGluAspGluArgLysIleValPheAspCysLys 1710979 : AATTCATGAACGGGGATTACAACGAGGACGAGAGGAAGATTGTGTTCGATTGTAAA : 1711032 106 : ArgLysGlyValLeuLeuMetCysThrPheIlePhePheValGlnGlyThrValIl : 124 ||| ! !!..!!!!!!!! ||| !.!! !! ! ! ..! !..! !|||:! ArgLeuCysThrPhePheThrCysPheLeuSerSerValThrLeuSerCysValLe 1711033 : CGCCTGTGTACATTCTTCACTTGTTTCCTCTCATCTGTGACTTTATCGTGCGTTCT : 1711089 125 : eGlyTyrValLeuThrProIleIle{G} >>>> Target Intron 1 >>>> : 133 !..!||||||:!!||||||||| !{ } 119 bp uSerTyrValValThrProIleTyr{M}++ + 1711090 : CTCTTACGTCGTCACTCCAATTTAC{A}gt.........................a : 1711234 134 : {lu}AsnIleGlyLysAsnGluSerAspArgValLeuProValThrLeuTrpIle : 150 { !}|||||||||!:!|||||||||||||||:!!|||||| !!! !:!!|||||| +{et}AsnIleGlyArgAsnGluSerAspArgIleLeuProPheLysMetTrpIle 1711235 : g{TG}AATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTGGATT : 1711286 151 : AsnIleProValThrThrThrProTyrPheGluIleCysPheValMetGlu >>> : 168 :!!||||||..!:!!! !|||||||||||||||||| |||...:!::!! AspIleProThrSerMetThrProTyrPheGluIlePhePheThrLeuGln++ 1711287 : GATATACCGACATCGATGACACcgtattttgaaatattcttcaccTTACAGgt... : 1711342 169 : > Target Intron 2 >>>> SerLeuThrIleValHisIleGlyIleCysPh : 178 546 bp !|||:!! !!!.||||||:!: !!!: ++ValLeuSerAlaTyrGlnIleGlyValSerTy 1711343 : ......................agGTTTTATCCGCGTATCAAATTGGCGTGAGTTA : 1711916 179 : ePheCysPheAspIlePheLeuCysIleLeuAsnIleHisAlaAlaGlyGlnPheL : 197 ! !|||||||||! ! !!|||||||||:!!|||:!!||| !||| !||||||: rGlyCysPheAspAsnValLeuCysIleMetAsnLeuHisLeuAlaThrGlnPheA 1711917 : CGGTTGCTTCGACAACGTTCTATGCATCATGAACCTACACTTGGCCACTCAGTTTC : 1711973 198 : ysMetLeuGlnHisArgPheAlaLeuValTyrAspGlyAspAsnLysGln<-><-> : 214 :!!!:||||||||||||.!.!.! !:!! !!! ! ! ! !:!|||||| rgIleLeuGlnHisArgLeuValAsnIleAsnGlyLeuLysSerLysGlnThrPro 1711974 : GAATACTGCAACATAGACTGGTGAATATAAACGGTCTGAAGAGCAAACAGACACCG : 1712027 215 : GluMetProIleThrAspLysLeuHisPheValLysAspSerGluGluIleTyrIl : 232 |||! ! !|||...! :!! !!! ..!:!! !:!!!!:.!. !||| GluLysGlyGluThrSerIleIleAspSerThrGluPheAlaAspAsnSerTyrAs 1712028 : GAGAAAGGTGAAACGTCGATTATAGATTCGACAGAATTTGCGGATAACTCTTACGA : 1712084 233 : eLysPheLysAspCysValLysHisHisLysIleLeuIleAspTyrThrGluLysV : 251 ! |||||| ||||||:::!!.|||:!! !|||!!:! !!:! ||||||: pValPheLysArgCysValArgGlnHisGlnSerLeuMetAlaPheCysGluLysL 1712085 : CGTTTTCAAAAGATGCGTTCGTCAACATCAATCTCTGATGGCTTTCTgcgagaaac : 1712141 252 : alGlnSerValPheThrPheIleIleLeuCysGlnIleLeuIleSerSerLeuMet : 269 :::::...:::|||!:!.!.||||||||| ! |||:!:|||:!:! !|||:!!.!. euGluGluMetPheSerMetIleIleLeuGlyGlnLeuLeuValPheSerIlePhe 1712142 : tcgaagaaatgTTCAGTATGATTATACTGGGGCAATTGTTAGTGTTCAGTATTTTT : 1712195 270 : MetThrMetAlaGlyPheGlnAlaLeuLeu >>>> Target Intron 3 >>> : 280 ||| !:!:! !! !! !|||!.!|||||| 142 bp MetCysLeuAspValCysGlnValLeuLeu++ 1712196 : ATGTGTCTCGACGTGTGCCAAGTACTTCTGgt........................ : 1712230 281 : > ThrHisGlySerIleIleArgArgLeuIlePheIleAlaHisThrSerGlyCy : 297 !! !!.!|||:!: !!:!!:!:::|||||| ||| !:!!||||| ++ProGlyAlaSerValGlyLysGlnMetIlePheThrPheHisLeuAlaGlyCy 1712231 : .agCCAGGTGCATCTGTGGGTAAACAGAtgattttcacgtttcacctAGCGGGATG : 1712421 298 : sPheAlaGlnLeuLeuLeuPheThrSerThrCysHisGluIleIleIleGluSerG : 316 |.!...!|||||||||:!!||||||! !!:!||| !! ||||||! |||||| sMetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleThrGluSerL 1712422 : TATGTGTCAATTGCTGATGTTTACGTACAGCTGCGATTGTATAATAACGGAAAGTT : 1712478 317 : lyGlyIleAlaAspAlaAlaTyrAsnAlaAspTrpAlaAsnThrProTyrAspAsp : 334 !..!:!:.!!!!:|||!.!|||:!!!.! ||| !!..! !||| ..! euAsnValThrGluAlaValTyrAspGlyProTrpProArgLeuProMetSerThr 1712479 : TGAACGTGACGGAAGCGGTGTACGATGGACCATGGCCACGTTTGCCAATGAGCACG : 1712532 335 : ValGlyArgSerLeuArgIleGlyLeuGlnLeuValMetIleArgAlaSerArgPr : 353 !||||||! !:!!|||! ! !||| !||||||!!:||||||:!!!!! !|| ArgGlyArgMetIleArgLysAspLeuIleLeuValIleIleArgSerArgValPr 1712533 : AGAGGAAGAATGATAAGGAAGGATTTGATACTCGTTATCATAAGATCGAGAGTACC : 1712589 354 : oCysHisLeuSerAlaGlyGlyPheCysHisValSerLeuAspThrPheThrAlaV : 372 |||| !|||!!!||| !!||||||! ! :!!||||||!!:|||!:!||| !| oCysCysLeuThrAlaArgGlyPhePheValIleSerLeuGluThrTyrThrLysV 1712590 : TTGTTGCTTGACCGCCAGAGGATTCTTCGTAATATCTTTGGAAACGTATACGAAGG : 1712646 373 : alIle : 373 ||||| alIle 1712647 : TAATT : 1712651 vulgar: gi|528747922|gb|AGS43056.1| 49 373 . KQ414915.1 1710866 1712651 + 554 M 83 249 S 0 1 5 0 2 I 0 115 3 0 2 S 1 2 M 34 102 5 0 2 I 0 542 3 0 2 M 46 138 G 0 6 M 66 198 5 0 2 I 0 138 3 0 2 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1710867 1712651 554 + . gene_id 2 ; sequence gi|528747922|gb|AGS43056.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1710867 1711116 . + . KQ414915.1 exonerate:protein2genome:local exon 1710867 1711116 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711117 1711118 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711117 1711235 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711234 1711235 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711236 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711236 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712227 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712227 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712228 1712229 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712228 1712369 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1712368 1712369 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1712370 1712651 . + . KQ414915.1 exonerate:protein2genome:local exon 1712370 1712651 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1710867 1712651 554 + . alignment_id 2 ; Query gi|528747922|gb|AGS43056.1| ; Align 1710867 50 249 ; Align 1711238 134 102 ; Align 1711886 168 138 ; Align 1712030 214 198 ; Align 1712370 280 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747922|gb|AGS43056.1| odorant receptor Or2g [Cephus cinctus] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 535 Query range: 0 -> 279 Target range: 1692124 -> 1695202 1 : MetLysLeuValGlyIleTrpValProLysAspAsnAsnGluGlnTrpIleMetAs : 19 ||||||:!!||||||:!:|||:!! !! |||.!. !|||||| ! ! || MetLysIleValGlyLeuTrpLeuAlaAlaAspGluAlaGluGlnArgArgArgAs 1692125 : ATGAAAATCGTAGGTCTGTGGCTAGCCGCCGACGAGGCTGAACAACGTCGGAGAAA : 1692179 20 : nCysAlaLeuSerTyrThrIleLeuValIleLeuLeuAlaValAlaIleGluGlyP : 38 |! !||||||! !||||||:!: !!.!|||!!!:!!||| !..!|||! ! ! nPheAlaLeuIleTyrThrLeuAsnAlaIlePheIleAlaSerCysIleAlaMetA 1692180 : TTTCGCGCTGATTTACACGCTGAACGCGATTTTTATCGCTTCGTGTATAGCAATGA : 1692236 39 : heAspIleTyrTyrCysTrpGlyAsnPheTyr >>>> Target Intron 1 > : 49 ||||||||||||! !||||||||| ! !! 1732 bp rgAspIleTyrTyrSerTrpGlyAsnValAsn++ 1692237 : GAGATATATACTATTCCTGGGGAAACGTGAACgt...................... : 1692271 50 : >>> AlaThrThrTyrThrAlaCysAlaThrMetProValIleIleValLeuAla : 65 ! ! !! !|||..!!.!||| !! !:!: !:!! ||||||!!! ! ++AspCysIleTyrValGlyCysAsnIleLeuTyrLeuAlaIleValPhePhe 1692272 : ...agGACTGCATTTACGTCGGGTGCAACATTTTATACCTAGCGATCGTTTTCTTC : 1694049 66 : LysIlePhePheLeuLeuLeuArgArgLysLeuValMetGluLeuIleGluPheTh : 84 ||||||.!! !!|||! ! !!.!|||! ! ! !! ! !||||||..!||||| LysIleLeuValLeuTyrLysHisArgIleGluPheTyrGlyLeuIleArgPheTh 1694050 : AAGATCCTCGTTTTGTACAAGCACAGAATAGAATTCTACGGGTTAATCAGGTTCAC : 1694106 85 : rGluLysAsnPheTrpGlnGlyAspTyrAspSerTyrGlyMetSerValLeuAspA : 103 |:!!:!!!!.||||||!!. !||||||:!!||| ! !! !! !:!!|||..!! rGlnGluLysPheTrpHisPheAspTyrAsnSerArgGluLysLeuIleLeuSerG 1694107 : GCAAGAGAAATTCTGGCATTTCGACTATAATTCACGGGAGAAGTTAATTTTATCCG : 1694163 104 : spIleAspArgLysGlyValLeuLeuMetCysThrPheIlePhePheValGlnGly : 121 !: ! ! !:!! ! !!..!:!!!!!!!: !.!!|||! !|||! !..!|||||| luCysLysLysIleCysThrValPheIleValAlaPheSerPheCysThrGlnGly 1694164 : AGTGCAAGAAGATATGTACCGTTTTCATCGTTGCCTTCAGCTTCTGTACTCAGGGC : 1694217 122 : ThrValIleGlyTyrValLeuThrProIleIle{G} >>>> Target Intron : 133 ||| ! !|||||||||:!!|||||||||:!!{!} 100 bp ThrCysAlaGlyTyrValValThrProIleLeu{A}++ 1694218 : ACGTGTGCTGGTTACGTAGTGACACCTATTTTA{g}gt.................. : 1694256 134 : 2 >>>> {lu}AsnIleGlyLysAsnGluSerAspArgValLeuProValThrL : 148 { !}|||:!!|||||||||:!!|||!!:|||:!!|||||| !!!.!: ++{la}AsnValGlyLysAsnGlnSerGluArgMetLeuProPheAsnM 1694257 : .......ag{CA}AATGTTGGAAAAAACCAATCCGAAAGGATGTTACCTTTCAACA : 1694398 149 : euTrpIleAsnIleProValThrThrThrProTyrPheGluIleCysPheValMet : 166 !!|||:!!:!!.!!|||..! ! !:!!||||||!:!|||:!! !|||:!!!!: etTrpValAspPheProThrGlyLeuSerProTyrTyrGluValLeuPheIleIle 1694399 : TGTGGGTTGACTTTCCTACAGGATTGTCGCCTTATTATGAAGTCCTTTTCATCATA : 1694452 167 : Glu >>>> Target Intron 3 >>>> SerLeuThrIleValHisIleGly : 175 :!! 409 bp !!!||| !:!: !|||:!!||| Gln++ ++ThrLeuCysValTyrHisValGly 1694453 : CAGgt.........................agACACTTTGCGTGTACCATGTCGGT : 1694888 176 : IleCysPhePheCysPheAspIlePheLeuCysIleLeuAsnIleHisAlaAlaGl : 194 ||||||!:!.!.|||||||||! !.!!||| !!:!!||||||:!!|||!.!||| IleCysTyrMetCysPheAspAsnIleLeuSerLeuLeuAsnLeuHisValAlaTh 1694889 : ATATGTTACATGTGCTTCGACAACATCCTCAGCCTTCTGAATCTTCACGTGGCCAC : 1694945 195 : yGlnPheLysMetLeuGlnHisArgPheAlaLeuValTyrAspGlyAspAsnLysG : 213 !||||||:::!!:||||||:!!|||||| ! !:!! !:!!! ! !.!.|||| rGlnPheArgIleLeuGlnTyrArgPheMetAsnLeuSerAsnValIleGluLysG 1694946 : TCAATTTCGTATCCTTCAATACCGATTCATGAATTTGAGTAATGTAATTGAGAAGC : 1695002 214 : lnGluMetProIleThrAspLysLeuHisPheValLysAspSerGluGluIleTyr : 231 || ! ! :::::: !:!..!!!. !!!!! !!:! !||| lnThrAspGlyArgGluLeuGluIleGlyTyrThrAsnPheThrValAspSerTyr 1695003 : AAACAGACGGTcgagaattggaaattggtTACACAAATTTCACAGTCGATAGTTAC : 1695056 232 : IleLysPheLysAspCysValLysHisHisLysIleLeuIleAspTyrThrGluLy : 250 :!!:!!!!.|||..!||||||:!!:!!|||:!! !|||! !! !||| !:!!|| LeuGlnLeuLysSerCysValGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLy 1695057 : TTACAATTGAAGAGTTGCGTGCAATACCATCAGGCACTTACAGGCTATTGCAAAAA : 1695113 251 : sValGlnSerValPheThrPheIleIleLeuCysGlnIleLeuIleSerSerLeuM : 269 |:!!:!!!:!:!!|||:!!!!.:!!:!:||| ! |||:!:|||.!! !:!!:!!: sLeuGluAsnIlePheSerLeuLeuValLeuGlyGlnValLeuPheLeuAlaMetV 1695114 : GTTGGAGAACATATTTTCGTTGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGG : 1695170 270 : etMetThrMetAlaGlyPheGlnAlaLeuLeu : 279 !::!: !:!:!.!|||!:!||| !!!!||| alLeuCysLeuValGlyTyrGlnLeuPheLeu 1695171 : TACTTTGCCTCGTGGGATATCAGCTATTTCTG : 1695202 vulgar: gi|528747922|gb|AGS43056.1| 0 279 . KQ414915.1 1692124 1695202 + 535 M 48 144 5 0 2 I 0 1728 3 0 2 M 84 252 S 0 1 5 0 2 I 0 96 3 0 2 S 1 2 M 34 102 5 0 2 I 0 405 3 0 2 M 112 336 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1692125 1695202 535 + . gene_id 3 ; sequence gi|528747922|gb|AGS43056.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1692125 1692268 . + . KQ414915.1 exonerate:protein2genome:local exon 1692125 1692268 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1692269 1692270 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1692269 1694000 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1693999 1694000 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694001 1694253 . + . KQ414915.1 exonerate:protein2genome:local exon 1694001 1694253 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694254 1694255 . + . intron_id 2 ; splice_site "gt" KQ414915.1 exonerate:protein2genome:local intron 1694254 1694353 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1694352 1694353 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694354 1694457 . + . KQ414915.1 exonerate:protein2genome:local exon 1694354 1694457 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1694458 1694459 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1694458 1694866 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1694865 1694866 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1694867 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694867 1695202 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1692125 1695202 535 + . alignment_id 3 ; Query gi|528747922|gb|AGS43056.1| ; Align 1692125 1 144 ; Align 1694001 49 252 ; Align 1694356 134 102 ; Align 1694867 168 336 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747922|gb|AGS43056.1| odorant receptor Or2g [Cephus cinctus] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 418 Query range: 46 -> 214 Target range: 1681303 -> 1682091 47 : PheTyrAlaThrThrTyrThrAlaCysAlaThrMetProValIleIleValLeuAl : 65 ||| |||.!!||||||||||||||| !|||!!:|||:!!.!!:!!:!!||| Phe***AlaAlaThrTyrThrAlaCysAsnThrIleProLeuPheValIleLeuMe 1681304 : ttttaggcAGCGACGTACACTGCTTGCAACACGATACCACTTTTCGTAATACTAAT : 1681358 66 : aLysIlePhePheLeuLeuLeuArgArgLysLeuValMetGluLeuIleGluPheT : 84 !|||! ! !! ! !!! !:!!||||||||| !:!!:!! !||||||||||||. tLysThrValValPheThrIleArgArgLysGluIleLeuTrpLeuIleGluPheA 1681359 : GAAGACTGTTGTATTCACGATTCGACGAAAAGAAATACTGTGGCTGATCGAATTTG : 1681415 85 : hrGluLysAsnPheTrpGlnGlyAspTyrAspSerTyrGlyMetSerValLeuAsp : 102 !!:!!||| !!||||||!!.! ! ! :!!..!|||!:!|||! !.!!.!:!!||| laGlnLysTyrPheTrpHisAspLysHisSerSerPheGlyLysLysAlaMetAsp 1681416 : CCCAAAAATACTTTTGGCACGACAAGCACAGCAGCTTTGGAAAAAAGGCCATGGAC : 1681469 103 : AspIleAspArgLysGlyValLeuLeuMetCysThrPheIlePhePheValGlnGl : 121 :!!:!!|||!:!!:!!.!:!!:!!! !|||! !:!!|||! !.!!.!.:!! ! !. AsnLeuAspLysArgAlaLeuIleTyrMetSerSerPheThrIleLeuIleTyrAl 1681470 : AACCTTGACAAGAGAGCCCTAATATATATGTCCTCTTTCACTATCCTAATTTATGC : 1681526 122 : yThrValIleGlyTyrValLeuThrProIleIle{G} >>>> Target Intro : 133 !||||||:!! !|||||||||:!!||||||:!!{|} 161 bp aThrValValIleTyrValLeuSerProIleLeu{G}++ 1681527 : AACAGTCGTTATATACGTGTTGTCTCCAATTCTT{G}gt................. : 1681565 134 : n 1 >>>> {lu}AsnIleGlyLysAsnGluSerAspArgValLeuProValThr : 147 {||}||||||||||||!:!!!:..!!!:|||:!!|||||| !! !! ++{lu}AsnIleGlyLysSerAspGluGluArgIleLeuProPhePro 1681566 : ........ag{aG}AACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCA : 1681765 148 : LeuTrpIle<->AsnIleProValThrThrThrProTyrPheGluIleCysPheVa : 165 !!! ! :!: |||:!:|||..!:!! !|||||||||:::|||||| ||||| PheArgValPheAsnLeuProThrSerLeuThrProTyrTyrGluIleLeuPheVa 1681766 : TTCAGAGTGTTTAACTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGT : 1681822 166 : lMetGlu >>>> Target Intron 2 >>>> SerLeuThrIleValHisIl : 174 |!!:||| 120 bp !!!|||:!!:!:|||||| lIleGlu++ ++ThrLeuSerValValHisSe 1681823 : GATAGAGgt.........................agACATTATCTGTGGTGCATTC : 1681969 175 : eGlyIleCysPhePheCysPheAspIlePheLeuCysIleLeuAsnIleHisAlaA : 193 ||||||||||||! !|||||||||! !|||||||||||||||!:!!!:|||!.!! rGlyIleCysPheCysCysPheAspAsnPheLeuCysIleLeuSerMetHisValG 1681970 : GGGAATTTGTTTCTGTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCG : 1682026 194 : laGlyGlnPheLysMetLeuGlnHisArgPheAlaLeuValTyrAspGlyAspAsn : 211 .!||||||||||||!!:||||||:!!!:!.!! ! !|||! ..!! ! ! ::: lyGlyGlnPheLysIleLeuGlnAsnLysLeuGlnThrValLeuSerGluLysSer 1682027 : GTGGACAGTTTAAGATTTTACAAAACAAACTCCAAACAGTATTGAGTGAGAAatct : 1682080 212 : LysGlnGlu : 214 ...:::||| SerLysGlu 1682081 : tcgaaagaa : 1682091 vulgar: gi|528747922|gb|AGS43056.1| 46 214 . KQ414915.1 1681303 1682091 + 418 M 86 258 S 0 1 5 0 2 I 0 157 3 0 2 S 1 2 M 17 51 G 0 3 M 17 51 5 0 2 I 0 116 3 0 2 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681304 1682091 418 + . gene_id 4 ; sequence gi|528747922|gb|AGS43056.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681304 1681562 . + . KQ414915.1 exonerate:protein2genome:local exon 1681304 1681562 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681563 1681564 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681563 1681723 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681722 1681723 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1681724 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681724 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 1 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682091 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682091 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681304 1682091 418 + . alignment_id 4 ; Query gi|528747922|gb|AGS43056.1| ; Align 1681304 47 258 ; Align 1681726 134 51 ; Align 1681780 151 51 ; Align 1681951 168 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747922|gb|AGS43056.1| odorant receptor Or2g [Cephus cinctus] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 365 Query range: 166 -> 372 Target range: 1702013 -> 1703238 167 : GluSerLeuThrIleValHisIleGlyIleCysPhePheCysPheAspIlePheLe : 185 :!! !|||:!!:!: !|||:!!|||:!!|||!:!.!!|||||||||! !.!!|| GlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLe 1702014 : CAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTT : 1702068 186 : uCysIleLeuAsnIleHisAlaAlaGlyGlnPheLysMetLeuGlnHisArgPheA : 204 ||||:!::!!|||:!:||||||||| !||||||:::!!:||||||:!!|||!!.: uCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuS 1702069 : GTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTAT : 1702125 205 : laLeuValTyrAspGlyAspAsnLysGlnGluMetProIleThrAspLysLeuHis : 222 !! !:!! !||| !:!!!..||||||! ! !! ! !..!!.. ! ! erAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAla 1702126 : CGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCT : 1702179 223 : PheValLysAspSerGluGluIleTyrIleLysPheLysAspCysValLysHisHi : 241 .!. !::: !:!!|||.!. !|||! !||||||:!!||||||::!!!.|| LeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHi 1702180 : CTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACA : 1702236 242 : sLysIleLeuIleAspTyrThrGluLysValGlnSerValPheThrPheIleIleL : 260 |:!!! !! !||| ||| !.!.!:!:!!.!...!:!!|||||| !!|||:!!| sGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValL 1702237 : TCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTAC : 1702293 261 : euCysGlnIleLeuIleSerSerLeuMetMetThrMetAlaGlyPheGlnAlaLeu : 278 || ! !!.||||||:!!! !||||||:!!!!: !:!!!.!|||||||||!.!||| euGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeu 1702294 : TCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTC : 1702347 279 : LeuThrHisGlySerIle{I} >>>> Target Intron 1 >>>> {le}Ar : 286 :!!..!!.! ! ! !{ } 607 bp { }|| ValValArgPheValGlu{P}-+ ++{ro}Ar 1702348 : GTGGTACGTTTCGTTGAA{C}ct.........................ag{CG}AG : 1702978 287 : gArgLeuIlePheIleAlaHisThrSerGlyCysPheAlaGlnLeuLeuLeuPheT : 305 |||||||! !|||:!! !|||! ! !||| !!.!...!|||||||||||||||| gArgLeuThrPheValPheHisIleValGlySerLeuCysGlnLeuLeuLeuPheT 1702979 : GCGGCTTACTTTCGTATTTCACATAGTCGGTAGTCTATGCCAACTATTGCTATTTA : 1703035 306 : hrSerThrCysHisGluIleIleIleGluSerGlyGlyIleAlaAspAlaAlaTyr : 323 ||! !!:!||| !!! :!:||| |||||| !..!|||!.! !||| !||| hrTyrSerCysAspGlyLeuIleGluGluSerThrAsnIleGlyThrAlaIleTyr 1703036 : CCTATAGCTGCGACGGTCTGATAGAGGAAAGTACGAACATCGGGACTGCGATATAC : 1703089 324 : AsnAlaAspTrpAlaAsnThrProTyrAspAspValGlyArgSerLeuArgIleGl : 342 !!.! !||| !:!! !||| ||| ! !.!||||||!!!||||||! !! LeuGlyProTrpIleHisLeuProMetAspLysAlaGlyArgArgLeuArgArgAs 1703090 : CTCGGGCCTTGGATACATCTGCCAATGGACAAAGCCGGCAGAAGGTTGAGAAGAGA : 1703146 343 : yLeuGlnLeuValMetIleArgAlaSerArgProCysHisLeuSerAlaGlyGlyP : 361 !||| !:!!|||!!::!!|||:!!!!!!:! !! !! !|||!!!|||.!!|||| pLeuThrMetValIleValArgSerArgLysSerSerCysLeuThrAlaSerGlyP 1703147 : CTTGACAATGGTCATCGTAAGATCGAGAAAATCGAGCTGTTTAACTGCCAGCGGAT : 1703203 362 : heCysHisValSerLeuAspThrPheThrAlaVal : 372 ||! !! !|||||||||!!:|||! !|||.!!||| hePheProValSerLeuGluThrCysThrThrVal 1703204 : TCTTTCCTGTTTCGCTGGAAACTTGTACCACGGTA : 1703238 vulgar: gi|528747922|gb|AGS43056.1| 166 372 . KQ414915.1 1702013 1703238 + 365 M 118 354 S 0 1 5 0 2 I 0 603 3 0 2 S 1 2 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702014 1703238 365 + . gene_id 5 ; sequence gi|528747922|gb|AGS43056.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1702014 1702368 . + . KQ414915.1 exonerate:protein2genome:local exon 1702014 1702368 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1702369 1702370 . + . intron_id 1 ; splice_site "CT" KQ414915.1 exonerate:protein2genome:local intron 1702369 1702975 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1702974 1702975 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1702976 1703238 . + . KQ414915.1 exonerate:protein2genome:local exon 1702976 1703238 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702014 1703238 365 + . alignment_id 5 ; Query gi|528747922|gb|AGS43056.1| ; Align 1702014 167 354 ; Align 1702978 286 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747922|gb|AGS43056.1| odorant receptor Or2g [Cephus cinctus] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 272 Query range: 224 -> 372 Target range: 1682088 -> 1682814 225 : LysAspSerGluGluIleTyrIleLysPheLysAspCysValLysHisHisLysIl : 243 ::: ||| ! !:!:|||! !:!!||||||!!:||||||:!!:!!||| ! :! GluLysSerAlaGlyLeuTyrLysGluPheLysGluCysValGlnTyrHisHisLe 1682089 : gaaaaatcagctGGACTGTATAAAGAGTTCAAGGAGTGCGTACAGTATCATCATTT : 1682143 244 : eLeuIleAspTyrThrGluLysValGlnSerValPheThrPheIleIleLeuCysG : 262 :|||:!!...|||...||||||:::::: |||||| ! !! :!::!! !| uLeuLeuSerTyrValGluLysLeuGluTyrValPheCysValProLeuMetIleG 1682144 : GCTTCTTTCGtacgtggaaaaattggaatacgTATTTTGTGTCCCGTTGATGATTC : 1682200 263 : lnIleLeuIleSerSerLeuMetMetThrMetAlaGlyPheGlnAlaLeuLeu > : 280 ||:!:|||:!:||||||:!!:!::!! !:!::!!||||||||| !! !||| lnLeuLeuValSerSerIleValLeuCysValSerGlyPheGlnLeuSerLeu++ 1682201 : AATTGCTGGTGTCTAGCATAGTTCTGTGCGTCTCGGGGTTTCAACTATCATTGgt. : 1682256 281 : >>> Target Intron 1 >>>> ThrHisGlySerIleIleArgArgLeuIle : 289 285 bp ..!:!!||| !:!:!!:!:!||||||:!: ++ValAsnGlyValLeuMetLysArgLeuLeu 1682257 : ........................agGTGAACGGTGTATTGATGAAACGATTGTTG : 1682566 290 : PheIleAlaHisThrSerGlyCysPheAlaGlnLeuLeuLeuPheThrSerThrCy : 308 |||:!! !:!! ! !||| ! ! |||:::...|||...||| !!.!|| PheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePheLeuIleThrLeuAsnCy 1682567 : TTCCTAAATTACTTTCTCGGTGGAGTGATacagatatttttaataacccTAAATTG : 1682623 309 : sHisGluIleIleIleGluSerGlyGlyIleAlaAspAlaAlaTyrAsnAlaAspT : 327 |:!!!!:|||!!: :!!||||||!.!|||!.! ||| !|||!:!..!:!!| sAsnAspIleMetGluGlnSerGlyAlaIleGlyThrAlaIleTyrSerCysAsnT 1682624 : CAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAGCGATCTACAGTTGTAATT : 1682680 328 : rpAlaAsnThrProTyrAspAspValGlyArgSerLeuArgIleGlyLeuGlnLeu : 345 ||! !!..!.. |||::: ..!!!!|||! ! !:!!..!:!! rpGluArgAsnValTyrAsnHisPhe---TyrGlnPheArgLysAspMetMetIle 1682681 : GGGAGAGGAAtgtttataatcatttt---taccAGTTCAGAAAGGATATGATGATT : 1682731 346 : ValMetIleArgAlaSerArgProCysHisLeuSerAlaGlyGlyPheCysHisVa : 364 ||||||:!!||||||!.!|||||||||:!!:!!||||||!.! !|||! !! :! ValMetValArgAlaLysArgProCysTyrIleSerAlaAlaLysPhePheProIl 1682732 : GTAATGGTACGAGCGAAACGTCCTTGCTACATTTCAGCAGCGAAATTCTTTCCAAT : 1682788 365 : lSerLeuAspThrPheThrAlaVal : 372 !||||||!!::!!|||||| ||| eSerLeuGluSerPheThrLysVal 1682789 : CTCCCTTGAATCGTTCACGAaggta : 1682814 vulgar: gi|528747922|gb|AGS43056.1| 224 372 . KQ414915.1 1682088 1682814 + 272 M 55 165 5 0 2 I 0 281 3 0 2 M 56 168 G 1 0 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682089 1682814 272 + . gene_id 6 ; sequence gi|528747922|gb|AGS43056.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1682089 1682253 . + . KQ414915.1 exonerate:protein2genome:local exon 1682089 1682253 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1682254 1682255 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1682254 1682538 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1682537 1682538 . + . intron_id 0 ; splice_site "aG" KQ414915.1 exonerate:protein2genome:local cds 1682539 1682814 . + . KQ414915.1 exonerate:protein2genome:local exon 1682539 1682814 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1682089 1682814 272 + . alignment_id 6 ; Query gi|528747922|gb|AGS43056.1| ; Align 1682089 225 165 ; Align 1682539 280 168 ; Align 1682707 337 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747922|gb|AGS43056.1| odorant receptor Or2g [Cephus cinctus] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 201 Query range: 283 -> 373 Target range: 1708172 -> 1708442 284 : IleIleArgArgLeuIlePheIleAlaHisThrSerGlyCysPheAlaGlnLeuLe : 302 |||!!:!:!||||||! !|||:!: !||| !!!!||||||.!...!|||||||| IleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuCysGlnLeuLe 1708173 : ATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGTGCCAACTGTT : 1708227 303 : uLeuPheThrSerThrCysHisGluIleIleIleGluSerGlyGlyIleAlaAspA : 321 |:!!||||||! !!:!||| !! :!:||| !|||||| !..!:!:|||:!!| uMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAlaAsnA 1708228 : GATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCCAATG : 1708284 322 : laAlaTyrAsnAlaAspTrpAlaAsnThrProTyrAspAspValGlyArgSerLeu : 339 || !|||:!!..!...||| !:!! !||| ||| !||||||! !||| laIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeu 1708285 : CTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTG : 1708338 340 : ArgIleGlyLeuGlnLeuValMetIleArgAlaSerArgProCysHisLeuSerAl : 358 |||! !! !||| !!!!|||!!: !|||:!!!!! !|||||| !|||!!!|| ArgLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAl 1708339 : CGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGC : 1708395 359 : aGlyGlyPheCysHisValSerLeuAspThrPheThrAlaValIle : 373 | !!||||||! !! !|||||||||!!:|||!:!|||:!!|||||| aCysGlyPhePheProValSerLeuGluThrTyrThrSerValIle 1708396 : TTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGGTAATT : 1708442 vulgar: gi|528747922|gb|AGS43056.1| 283 373 . KQ414915.1 1708172 1708442 + 201 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1708173 1708442 201 + . gene_id 7 ; sequence gi|528747922|gb|AGS43056.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1708173 1708442 . + . KQ414915.1 exonerate:protein2genome:local exon 1708173 1708442 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1708173 1708442 201 + . alignment_id 7 ; Query gi|528747922|gb|AGS43056.1| ; Align 1708173 284 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747922|gb|AGS43056.1| odorant receptor Or2g [Cephus cinctus] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 132 -> 167 Target range: 1706998 -> 1707103 133 : GluAsnIleGlyLysAsnGluSerAspArgValLeuProValThrLeuTrpIleAs : 151 |||!::||||||||||||||||||||||||:!!||| !|||!.!!!!||||||:! GluSerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAs 1706999 : GAAAgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGA : 1707053 152 : nIleProValThrThrThrProTyrPheGluIleCysPheValMetGlu : 167 !.!!|||..!|||! !|||||||||!:!||||||! |||..! !:!! pPheProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln 1707054 : CTTTCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAG : 1707103 vulgar: gi|528747922|gb|AGS43056.1| 132 167 . KQ414915.1 1706998 1707103 + 119 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1706999 1707103 119 + . gene_id 8 ; sequence gi|528747922|gb|AGS43056.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1706999 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1706999 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1706999 1707103 119 + . alignment_id 8 ; Query gi|528747922|gb|AGS43056.1| ; Align 1706999 133 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747922|gb|AGS43056.1| odorant receptor Or2g [Cephus cinctus] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 280 -> 373 Target range: 1678473 -> 1678746 281 : HisGlySerIleIleArgArgLeuIlePheIleAlaHisThrSerGlyCysPheAl : 299 !!.!.!|||:!::!!!:!|||:!!:!!!:!||| !:!!! ! !!.!! ! :! GlnAlaSerLeuLeuLysArgMetValTyrIleMetTyrMetValAlaSerValSe 1678474 : CAGGCATCCTTGCTAAAACGCATGGTCTACATCATGTACATGGTTGCCTCAGTGTC : 1678528 300 : aGlnLeuLeuLeuPheThrSerThrCysHisGluIleIleIleGluSerGlyGlyI : 318 !:!!|||! !|||.!...! !!||| !!|||:!:! !! !.!.||| !!.!| rGluLeuTrpLeuIleValArgThrValAspGluLeuThrThrHisSerLysAlaI 1678529 : AGAATTATGGTTGATAGTCCGAACCGTAGACGAACTGACCACTCATAGCAAAGCGA : 1678585 319 : leAlaAspAlaAlaTyrAsnAlaAspTrpAlaAsnThrProTyrAspAspValGly : 336 ||!.!|||||| !|||::!:!!|||||| ...... ::: ::: leGlyAspAlaMetTyrSerSerAspTrp---GlyValIlePheGlyLysLeuGlu 1678586 : TCGGCGATGCGATGTATTCCTCGGATTGG---GGAGTgatctttggaaaattggag : 1678636 337 : ArgSerLeuArgIleGlyLeuGlnLeuValMetIleArgAlaSerArgProCysHi : 355 :::...|||:::......||| ! !:!!:!:||||||:!!! !..! !!||| LysLysLeuLysPheAlaLeuThrThrMetValIleArgSerIleGluThrCysSe 1678637 : aagaaattaaaatttgcctTGACGACGATGGTTATCAGATCGATCGAGACGTGTTC : 1678693 356 : sLeuSerAlaGlyGlyPheCysHisValSerLeuAspThrPheThrAlaValIle : 373 !:!!!.!|||||| !|||... |||||| !!!:|||||||||:!!|||||| rMetLysAlaGlyPhePheAla---ValSerSerGluThrPheThrSerValIle 1678694 : TATGAAAGCTGGCTTCTTTGCG---GTCTCCAGTGAGACGTTTACATCGGTAATT : 1678746 vulgar: gi|528747922|gb|AGS43056.1| 280 373 . KQ414915.1 1678473 1678746 + 116 M 47 141 G 1 0 M 34 102 G 1 0 M 10 30 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1678474 1678746 116 + . gene_id 9 ; sequence gi|528747922|gb|AGS43056.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1678474 1678746 . + . KQ414915.1 exonerate:protein2genome:local exon 1678474 1678746 . + . insertions 0 ; deletions 2 KQ414915.1 exonerate:protein2genome:local similarity 1678474 1678746 116 + . alignment_id 9 ; Query gi|528747922|gb|AGS43056.1| ; Align 1678474 281 141 ; Align 1678615 329 102 ; Align 1678717 364 30 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747922|gb|AGS43056.1| odorant receptor Or2g [Cephus cinctus] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 133 -> 167 Target range: 1688056 -> 1688158 134 : AsnIleGlyLysAsnGluSerAspArgValLeuProValThrLeuTrpIleAsnIl : 152 |||!!:.!!::!|||:!!|||||||||||||||||| !!! !:!!|||:!!:!! AsnMetSerArgAsnLysSerAspArgValLeuProPheLysMetTrpValAspTr 1688057 : AATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTGGGTCGATTG : 1688111 153 : eProValThrThrThrProTyrPheGluIleCysPheValMetGlu : 167 |||:!!:!! !|||||||||!:!|||:!: |||..!.!.:!! pProLeuSerAspThrProTyrTyrGluLeuMetPheThrPheGln 1688112 : GCCGCTATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAG : 1688158 vulgar: gi|528747922|gb|AGS43056.1| 133 167 . KQ414915.1 1688056 1688158 + 102 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688057 1688158 102 + . gene_id 10 ; sequence gi|528747922|gb|AGS43056.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1688057 1688158 . + . KQ414915.1 exonerate:protein2genome:local exon 1688057 1688158 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688057 1688158 102 + . alignment_id 10 ; Query gi|528747922|gb|AGS43056.1| ; Align 1688057 134 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747926|gb|AGS43058.1| odorant receptor Or2i [Cephus cinctus] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 7 -> 69 Target range: 1680286 -> 1680472 8 : TyrThrSerThrLysIleSerGlnIleLeuIleThrLeuIleGlyMetLysArgGl : 26 ||| !|||! !::!:!!!!!!:!||||||!!:! !:!!||||||.!. !!.!! TyrPheSerIleArgLeuThrArgIleLeuMetLysIleIleGlyPheTrpAsnVa 1680287 : TACTTTTCCATTCGACTCACACGGATACTCATGAAAATCATAGGCTTCTGGAATGT : 1680341 27 : yLysThrLysArgGluGlnLeuLeuIleAspGlyLeuLeuValTyrIlePheAlaT : 45 !:!!|||!:!||||||||||||:!!:!: ! ! !! !:!!|||!!:!!. !. lGlnThrArgArgGluGlnLeuIleLeuArgValAsnTyrLeuTyrMetLeuLeuV 1680342 : TCAGACAAGAAGGGAACAGCTGATATTGCGAGTCAACTATCTGTACATGTTGCTCG : 1680398 46 : hrValLeuIleAlaIlePheValGluAsnSerAspLeuIleTyrSerArgAsnAsp : 63 .!:!!! !:!!:!!||| :!!||| ! !|||||| !|||!!!|||:!!||| alLeuSerValSerIleThrIleGluLeuLeuAspLeuTyrTyrCysArgHisAsp 1680399 : TTCTTTCTGTATCTATAACAATCGAATTGTTAGATCTTTATTATTGCCGGCATGAT : 1680452 64 : LeuTyrAlaLeuThrTyr : 69 ||||||!.!! !|||:!! LeuTyrValCysThrHis 1680453 : TTATATGTGTGTACACAT : 1680472 vulgar: gi|528747926|gb|AGS43058.1| 7 69 . KQ414915.1 1680286 1680472 + 110 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1680287 1680472 110 + . gene_id 1 ; sequence gi|528747926|gb|AGS43058.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1680287 1680472 . + . KQ414915.1 exonerate:protein2genome:local exon 1680287 1680472 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1680287 1680472 110 + . alignment_id 1 ; Query gi|528747926|gb|AGS43058.1| ; Align 1680287 8 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747926|gb|AGS43058.1| odorant receptor Or2i [Cephus cinctus] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 151 -> 200 Target range: 1699037 -> 1699184 152 : ValGlyThrAsnThrThrGluArgThrLeuProPheArgValValPheAspLeuPr : 170 :::||| |||!:!:!!!!:|||..!|||||||||!.!:!! ! !!|||||||| IleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTrpValAspLeuPr 1699038 : attggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTGGGTTGATTTGCC : 1699092 171 : oLeuThrValThrProTyrTyrGluIleSerTyrValIleGluValIleGlyAlaP : 189 ||||:!!|||:!!||| ||||||||| !!:!|||:!!:!!||| ! ! ! oLeuSerValSerProThrTyrGluIleValPheValLeuGlnValArgLeuLeuA 1699093 : GCTGTCTGTGTCACCAACGTACGAAATAGTGTTCGTGCTTCAGGTACGTCTACTCA : 1699149 190 : heSerValGlyLeuCysSerValAlaPheAlaSer : 200 !||| !.!!!!!|||!!! ! !||||||!:! snSerCysSerPheCysArgHisAsnPheAlaAsn 1699150 : ATTCATGCAGCTTTTGTAGACACAATTTTGCCAAT : 1699184 vulgar: gi|528747926|gb|AGS43058.1| 151 200 . KQ414915.1 1699037 1699184 + 104 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699038 1699184 104 + . gene_id 2 ; sequence gi|528747926|gb|AGS43058.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1699038 1699184 . + . KQ414915.1 exonerate:protein2genome:local exon 1699038 1699184 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699038 1699184 104 + . alignment_id 2 ; Query gi|528747926|gb|AGS43058.1| ; Align 1699038 152 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747928|gb|AGS43059.1| odorant receptor Or2j [Cephus cinctus] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 221 Query range: 1 -> 117 Target range: 1681318 -> 1681830 2 : TyrAsnLeuCysSerThrMetProLeuValMetValLeuValLysIleSerAsnPh : 20 |||!.! !|||!:!|||!!:|||||| !!:!::!!|||:!!|||! ! ! || TyrThrAlaCysAsnThrIleProLeuPheValIleLeuMetLysThrValValPh 1681319 : TACACTGCTTGCAACACGATACCACTTTTCGTAATACTAATGAAGACTGTTGTATT : 1681373 21 : eLeuPheHisTrpAsnValMetMetTyrLeuIleSerPheAlaGlnAsnAsnPheT : 39 | !.!!!.. ! !!.! !!!::!!!::||||||..!|||||||||!!. !!|||| eThrIleArgArgLysGluIleLeuTrpLeuIleGluPheAlaGlnLysTyrPheT 1681374 : CACGATTCGACGAAAAGAAATACTGTGGCTGATCGAATTTGCCCAAAAATACTTTT : 1681430 40 : rpCysAspProAspAspAspPheThrArgGluThrMetLysArgCysAspLysTyr : 57 || !||| ! !!..!..!||| !!:!:!!.!!||| ! !.! !|||||| rpHisAspLysHisSerSerPheGlyLysLysAlaMetAspAsnLeuAspLysArg 1681431 : GGCACGACAAGCACAGCAGCTTTGGAAAAAAGGCCATGGACAACCTTGACAAGAGA : 1681484 58 : GlyLysIlePheValTyrLeuPheThrAsnLeuValLeuPheAlaValLeuAspTy : 76 !.! !|||!:!:!!! !! !||||||! !|||:!!! ! .!!|||:!! || AlaLeuIleTyrMetSerSerPheThrIleLeuIleTyrAlaThrValValIleTy 1681485 : GCCCTAATATATATGTCCTCTTTCACTATCCTAATTTATGCAACAGTCGTTATATA : 1681541 77 : rIlePheAlaProValVal{G} >>>> Target Intron 1 >>>> {lu}A : 84 |:!:!!.:!!|||:!!:!!{|} 161 bp {||}| rValLeuSerProIleLeu{G}++ ++{lu}A 1681542 : CGTGTTGTCTCCAATTCTT{G}gt.........................ag{aG}A : 1681726 85 : snPheHisArgAsnGluThrAspArgIleLeuProPheThrLeuTrpVal<->Asn : 101 ||.!! !:!!:!!!: !!!:||||||||||||||| !!!!! ! ||| ||| snIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPheAsn 1681727 : ACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTTTAAC : 1681780 102 : LeuProValThrValThrProTyrTyrGluIleThrTyrThrIleGln : 117 ||||||..!:!!:!!|||||||||||||||||| :::..!|||:!! LeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu 1681781 : TTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAG : 1681830 vulgar: gi|528747928|gb|AGS43059.1| 1 117 . KQ414915.1 1681318 1681830 + 221 M 81 243 S 0 1 5 0 2 I 0 157 3 0 2 S 1 2 M 17 51 G 0 3 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681319 1681830 221 + . gene_id 1 ; sequence gi|528747928|gb|AGS43059.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681319 1681562 . + . KQ414915.1 exonerate:protein2genome:local exon 1681319 1681562 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681563 1681564 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681563 1681723 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681722 1681723 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1681724 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681724 1681830 . + . insertions 3 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681319 1681830 221 + . alignment_id 1 ; Query gi|528747928|gb|AGS43059.1| ; Align 1681319 2 243 ; Align 1681726 84 51 ; Align 1681780 101 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747928|gb|AGS43059.1| odorant receptor Or2j [Cephus cinctus] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 185 Query range: 1 -> 138 Target range: 1698556 -> 1699199 2 : TyrAsnLeuCysSerThrMetProLeuValMetValLeuValLysIleSerAsnPh : 20 |||!.! !|||!:!! !:!: !|||:!!|||||||||:!!|||:!:! ! ! ! TyrThrAlaCysAsnIleLeuCysLeuIleMetValLeuLeuLysLeuPheValVa 1698557 : TACACCGCTTGTAACATTCTCTGCCTGATTATGGTACTGTTAAAGCTGTTCGTTGT : 1698611 21 : eLeuPheHisTrpAsnValMetMetTyrLeuIleSerPheAlaGlnAsnAsnPheT : 39 !!!.!.||| !!!!.! !.!.!!: ! |||::: ::: ...||||||| lPheIleHisArgLysGluPheIleGluLeuLeuValTyrMetTyrLysAsnPheT 1698612 : ATTCATACACAGGAAAGAATTCATCGAACTgcttgtatatatgtacaaaaattttt : 1698668 40 : rpCysAspProAspAspAspPheThrArgGluThrMetLysArgCysAspLysTyr : 57 || ! ! ! !!||| ! ! !! ! ! !:!!:!! !||| !:! ! rpHisLeuAsnTyrAspCysAsnGluLeuLeuLeuLeuGlnAspCysArgArgIle 1698669 : ggcACCTCAATTACGATTGCAACGAACTACTACTGCTGCAAGACTGCAGAAGAATT : 1698722 58 : GlyLysIlePheValTyrLeuPheThrAsnLeuValLeuPheAlaValLeuAspTy : 76 .!!! |||! !:!! |||.!!!.! !! !!.!! ! !.!!:!!:!!..!|| SerThrIleCysIleThrLeuIleAsnPheCysAlaGlnGlyThrIleValSerTy 1698723 : AGCACTATATGTATCACGTTGATTAACTTCTGTGCTCAAGGCACAATTGTCAGCTA : 1698779 77 : rIlePheAlaProValVal{G} >>>> Target Intron 1 >>>> {lu}A : 84 |:!:.!..!!|||:!!:!!{!} 232 bp { !}| rValLeuThrProIleIle{A}++ ++{la}A 1698780 : CGTGCTAACACCTATTATA{G}gt.........................ag{ca}a : 1699035 85 : snPheHisArgAsnGluThrAspArgIleLeuProPheThrLeuTrpValAsnLeu : 102 ||... ||||||...:!!||||||:!:|||||||||!.!:!!||||||:!!||| snIleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTrpValAspLeu 1699036 : atattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTGGGTTGATTTG : 1699089 103 : ProValThrValThrProTyrTyrGluIleThrTyrThrIleGlnSerLeuSerTh : 121 |||:!!:!!|||:!!||| |||||||||..!!:!..!:!!||| !! ! ! ProLeuSerValSerProThrTyrGluIleValPheValLeuGlnValArgLeuLe 1699090 : CCGCTGTCTGTGTCACCAACGTACGAAATAGTGTTCGTGCTTCAGGTACGTCTACT : 1699146 122 : rLeuTyrThrGlyIleCysThrCysPhePheAspAsnPheIleSerValLeu : 138 ! !! !.!!.!!|||! ! ! !|||! !||| !! !..!:!!||| uAsnSerCysSerPheCysArgHisAsnPheAlaAsnThrLysGlnIleLeu 1699147 : CAATTCATGCAGCTTTTGTAGACACAATTTTGCCAATACCAAACAAATACTC : 1699199 vulgar: gi|528747928|gb|AGS43059.1| 1 138 . KQ414915.1 1698556 1699199 + 185 M 81 243 S 0 1 5 0 2 I 0 228 3 0 2 S 1 2 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1698557 1699199 185 + . gene_id 2 ; sequence gi|528747928|gb|AGS43059.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1698557 1698800 . + . KQ414915.1 exonerate:protein2genome:local exon 1698557 1698800 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1698801 1698802 . + . intron_id 1 ; splice_site "Gt" KQ414915.1 exonerate:protein2genome:local intron 1698801 1699032 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699031 1699032 . + . intron_id 0 ; splice_site "Ag" KQ414915.1 exonerate:protein2genome:local cds 1699033 1699199 . + . KQ414915.1 exonerate:protein2genome:local exon 1699033 1699199 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1698557 1699199 185 + . alignment_id 2 ; Query gi|528747928|gb|AGS43059.1| ; Align 1698557 2 243 ; Align 1699035 84 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747928|gb|AGS43059.1| odorant receptor Or2j [Cephus cinctus] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 80 -> 117 Target range: 1711228 -> 1711339 81 : ValValGluAsnPheHisArgAsnGluThrAspArgIleLeuProPheThrLeuTr : 99 ||| !! !|||.!! |||||||||:!!||||||||||||||||||! !:!!|| ValSerValAsnIleGlyArgAsnGluSerAspArgIleLeuProPheLysMetTr 1711229 : GTTTCAGTGAATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTG : 1711283 100 : pValAsnLeuProValThrValThrProTyrTyrGluIleThrTyrThrIleGln : 117 |:!!:!!:!!|||..!:!!:!!|||||||||:::|||||| :::|||:!!||| pIleAspIleProThrSerMetThrProTyrPheGluIlePhePheThrLeuGln 1711284 : GATTGATATACCGACATCGATGACACcgtattttgaaatattcttcaccTTACAG : 1711339 vulgar: gi|528747928|gb|AGS43059.1| 80 117 . KQ414915.1 1711228 1711339 + 124 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711229 1711339 124 + . gene_id 3 ; sequence gi|528747928|gb|AGS43059.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1711229 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711229 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711229 1711339 124 + . alignment_id 3 ; Query gi|528747928|gb|AGS43059.1| ; Align 1711229 81 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747928|gb|AGS43059.1| odorant receptor Or2j [Cephus cinctus] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 83 -> 117 Target range: 1688056 -> 1688158 84 : AsnPheHisArgAsnGluThrAspArgIleLeuProPheThrLeuTrpValAsnLe : 102 |||.!. !||||||:!!:!!||||||:!!|||||||||! !:!!||||||:!!! AsnMetSerArgAsnLysSerAspArgValLeuProPheLysMetTrpValAspTr 1688057 : AATATGAGCCGGAACAAATCGGACAGAGTACTTCCATTCAAAATGTGGGTCGATTG : 1688111 103 : uProValThrValThrProTyrTyrGluIleThrTyrThrIleGln : 117 !|||:!!:!!! !|||||||||||||||:!:! !!:!|||.!!||| pProLeuSerAspThrProTyrTyrGluLeuMetPheThrPheGln 1688112 : GCCGCTATCCGACACACCGTATTACGAGTTGATGTTCACTTTTCAG : 1688158 vulgar: gi|528747928|gb|AGS43059.1| 83 117 . KQ414915.1 1688056 1688158 + 115 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1688057 1688158 115 + . gene_id 4 ; sequence gi|528747928|gb|AGS43059.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1688057 1688158 . + . KQ414915.1 exonerate:protein2genome:local exon 1688057 1688158 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1688057 1688158 115 + . alignment_id 4 ; Query gi|528747928|gb|AGS43059.1| ; Align 1688057 84 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747928|gb|AGS43059.1| odorant receptor Or2j [Cephus cinctus] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 82 -> 117 Target range: 1706998 -> 1707103 83 : GluAsnPheHisArgAsnGluThrAspArgIleLeuProPheThrLeuTrpValAs : 101 |||!::... :::||||||:::|||||||||||| ! !!!.!!!!|||:!!:! GluSerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAs 1706999 : GAAAgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGA : 1707053 102 : nLeuProValThrValThrProTyrTyrGluIleThrTyrThrIleGln : 117 !!!!|||..!|||:!!|||||||||||||||||| !!:!||| ||| pPheProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln 1707054 : CTTTCCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAG : 1707103 vulgar: gi|528747928|gb|AGS43059.1| 82 117 . KQ414915.1 1706998 1707103 + 106 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1706999 1707103 106 + . gene_id 5 ; sequence gi|528747928|gb|AGS43059.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1706999 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1706999 1707103 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1706999 1707103 106 + . alignment_id 5 ; Query gi|528747928|gb|AGS43059.1| ; Align 1706999 83 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747924|gb|AGS43057.1| odorant receptor Or2h [Cephus cinctus] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 347 Query range: 13 -> 239 Target range: 1706483 -> 1707694 14 : AlaValTyrIleIleCysAsnIleLeuThrProGlyIleValLeuPheLysLeuSe : 32 !.!||||||:!!!!:||||||||||||||| !|||||| !|||||||||:!!! ValValTyrValMetCysAsnIleLeuThrValGlyIleSerLeuPheLysIleLe 1706484 : GTTGTTTACGTAATGTGCAACATTCTAACAGTGGGCATAAGTTTGTTCAAGATCTT : 1706538 33 : rMetIleArgLeuAsnArgLysSerLeuTyrGluLeuIleAspIleCysGlnThrL : 51 !:!: ! ! !:::::::::...... ||||||||| ..!::!|||! uValSerMetArgSerLysGluLysPheLeuGluLeuIleLysTyrAlaArgThrA 1706539 : GGTCTCGATGAGGagtaaggaaaaatttttggaattaattaaatacgcCAGAACGA : 1706595 52 : ysPheTrpHisAspAspTyrAspGluPheGlyIleAlaIleLeuGlnAsnCysGlu : 69 !.|||||||||...|||||||||..! ! ! ! !|||:!!.!..!.|||:!! snPheTrpHisSerAspTyrAspSerGlnGluGlnMetIleValAsnGluCysLys 1706596 : ATTTCTGGCACTCGGATTATGACTCGCAGGAGCAAATGATTGTGAACGAGTGTAAA : 1706649 70 : ThrLysCysValLeuLeuIleThrSerTyrMetSerPheAlaLeuPheThrAlaIl : 88 !...|||..!!!!|||||| ! !!:!! ! !|||||| ! |||!.! ArgSerCysThrPheLeuIleCysValPheAsnPhePheAlaAsnGlyThrValSe 1706650 : CGTTCTTGTACATTCCTCATATGCGTGTTTAATTTCTTCGCTAATGGGACAGTGTC : 1706706 89 : eThrTyrThrValArgSerIleIle{A} >>>> Target Intron 1 >>>> : 97 ! !|||! !:!!||| !!|||:!!{|} 542 bp rGlyTyrIleIleArgProIleVal{A}++ - 1706707 : TGGATACATAATCAGGCCAATTGTA{G}gt.........................g : 1707274 98 : {sp}AsnIleGlyLysThrGlyThrAspLysIleLeuProPheThrMetTrpLeu : 114 {||}||| ...... ||| :::... ||| !! ||| -{sp}Asn---AsnAsnPheGlnThrLysGluPheGluSerPheProThrGlnLeu 1707275 : t{AT}aac---aacaattttcaaacgaaggaatttgaaagttttccAACCCAATTA : 1707323 115 : AsnGluThrMetAlaArgAlaProTyrPheGlnLeu<->LeuPheIlePheGluGl : 132 ::::!!!:! ::!..! ! !||| !...||| |||!!. .!.:!!! SerLysSerTyrSerGluIleValTyrThrSerLeuCysLeuLeuSerLeuGlnVa 1707324 : TCAAAAAGTTACAGTGAAATCGTTTACACCAGTTTATGTCTGTTATCGCTACAGGT : 1707380 133 : yIleIleLeuCysTyrLeuGlyValGlyPhePheCysIleAspAsnPhePheCysI : 151 !.!!|||:!! |||:!! !!:!!.!!!:!.!!|||||||||||||||.!.|||! lPheIleValMetTyrValCysIleSerTyrLeuCysIleAspAsnPheLeuCysM 1707381 : TTTTATCGTAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTCTGTGCA : 1707437 152 : leIleAsnIleHisValAlaGlyGlnPheLysIleLeuGlnGlyLysLeuGluArg : 169 !:||||||:!!|||..!||| !||||||::!||||||||| !!:!|||..!!.! etIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsn 1707438 : TGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAAT : 1707491 170 : LeuCysGlyProAsnAspArgGluAspGluLysLysAspArgGlyIleTrpIleAr : 188 :!!|||||| !!|||!!:|||...|||::: ... ::: ! ValCysGlyAlaAsnGluArgSerAspLysIleSerLysLys---------ThrPr 1707492 : GTGTGCGGTGCAAACGAACGTAgcgataaaatttcgaaaaaa---------acaCC : 1707539 189 : gLysAsnProAlaAlaValPheGlnGluPheArgSerCysValGlnLeuHisLysM : 207 !...||| !!! !! ! !!:! :!!|||!:!!:!|||:!!|||! !|||:!! oSerAsnSerAspGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnA 1707540 : GTCCAATTCGGACGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAG : 1707596 208 : etLeuIleTyrTyrValGluLysValGluAlaIlePheSerLeuIleIleLeuCys : 225 |||||| ! ||| !.!.:!!:!!:!!! !:!:|||.!!|||.!!:!:|||... laLeuIleGluTyrCysAsnGluLeuGlnGluValPheGlyLeuPheValLeuAla 1707597 : CACTCATAGAATACTGTAACGAACTTCAAGAGGTGTTCGGTTTATTTGTGCTTGCA : 1707650 226 : GlnValIleLeuSerSerIleLeuMetCysLeuAlaGlyPhe : 239 ||||||:!:|||! !|||:!:||||||||||||! !|||!:! GlnValLeuLeuPheSerLeuLeuMetCysLeuAspGlyTyr 1707651 : CAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGATGGATAT : 1707694 vulgar: gi|528747924|gb|AGS43057.1| 13 239 . KQ414915.1 1706483 1707694 + 347 M 83 249 S 0 1 5 0 2 I 0 538 3 0 2 S 1 2 M 1 3 G 1 0 M 27 81 G 0 3 M 57 171 G 3 0 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1706484 1707694 347 + . gene_id 1 ; sequence gi|528747924|gb|AGS43057.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1706484 1706733 . + . KQ414915.1 exonerate:protein2genome:local exon 1706484 1706733 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1706734 1706735 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1706734 1707275 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707274 1707275 . + . intron_id 0 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local cds 1707276 1707694 . + . KQ414915.1 exonerate:protein2genome:local exon 1707276 1707694 . + . insertions 3 ; deletions 4 KQ414915.1 exonerate:protein2genome:local similarity 1706484 1707694 347 + . alignment_id 1 ; Query gi|528747924|gb|AGS43057.1| ; Align 1706484 14 249 ; Align 1707278 98 3 ; Align 1707281 100 81 ; Align 1707365 127 171 ; Align 1707536 187 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747924|gb|AGS43057.1| odorant receptor Or2h [Cephus cinctus] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 277 Query range: 94 -> 245 Target range: 1699025 -> 1699977 95 : IleIleAspAsnIleGlyLysThrGlyThrAspLysIleLeuProPheThrMetTr : 113 |||:!! |||||||||:::..!.!!:!!|||!:!:!:|||||||||!.!||||| IleLeuAlaAsnIleGlyArgAsnSerSerAspArgValLeuProPheAsnMetTr 1699026 : ATTTTAgcaaatattggaagaaaCAGTTCCGATAGAGTGCTCCCATTCAACATGTG : 1699080 114 : pLeuAsnGluThrMetAlaArgAlaProTyrPheGlnLeuLeuPheIlePheGlu : 132 |:!!:!! ! !!:!!:!! !:!!||| !:!:!!:!!:!!|||:!:.!!:!! pValAspLeuProLeuSerValSerProThrTyrGluIleValPheValLeuGln+ 1699081 : GGTTGATTTGCCGCTGTCTGTGTCACCAACGTACGAAATAGTGTTCGTGCTTCAGg : 1699137 133 : >>>> Target Intron 1 >>>> GlyIleIleLeuCysTyrLeuGlyValG : 141 499 bp ! !:!: !|||! !:!!:!!|||||| + ++ValLeuSerLeuTyrHisValGlyValC 1699138 : t.........................agGTTCTGTCTTTGTACCACGTTGGTGTAT : 1699663 142 : lyPhePheCysIleAspAsnPhePheCysIleIleAsnIleHisValAlaGlyGln : 159 !!!:!.!!|||.!!||||||.!!!!.|||:!:!!:|||:!:|||!.!||| !||| ysTyrIleCysPheAspAsnLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGln 1699664 : GTTACATTTGCTTCGACAACCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAA : 1699717 160 : PheLysIleLeuGlnGlyLysLeuGluArgLeuCysGlyProAsnAspArgGluAs : 178 |||:::||||||||| !!:!|||..!!.!||| !!! ! !!||| !:!:!!! PheArgIleLeuGlnTyrArgLeuSerAsnLeuGlyAspThrAsnArgLysGlnVa 1699718 : TTTCGTATACTGCAATACAGGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGT : 1699774 179 : pGluLysLysAspArgGlyIleTrpIleArgLysAsnProAlaAlaValPheGlnG : 197 !!: ! !!.!!: !.!! ! :!: !::: ! !!! ! ! !!:!:!!! lAspAspAsnGluSerSerAlaAlaLeuSerArgPheAlaGluAsnCysTyrLysA 1699775 : AGATGACAATGAATCCAGCGCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGG : 1699831 198 : luPheArgSerCysValGlnLeuHisLysMetLeuIleTyrTyrValGluLysVal : 215 !|||!:!!:!||||||!:!! !|||:!!! ! !||| ||| !.!.!:!:!! laPheLysAsnCysValArgGlnHisGlnAsnHisIleThrTyrCysHisArgLeu 1699832 : CGTTTAAAAATTGCGTACGACAACATCAGAATCATATCACGTACTGTCACAGATTG : 1699885 216 : GluAlaIlePheSerLeuIleIleLeuCysGlnValIleLeuSerSerIleLeuMe : 234 .!.! !||||||!!!:!!|||:!!||| ! !!.:!!:!!:!!! !|||:!!|||!! AsnGluIlePheThrValIleValLeuGlyHisIleLeuValPheSerLeuLeuIl 1699886 : AACGAAATATTCACGGTCATTGTACTCGGACACATACTTGTCTTCAGCCTTCTGAT : 1699942 235 : tCysLeuAlaGlyPheGlnAlaValSerAspAsp : 245 :||||||!.!|||||||||!.!:!! !!!::!! eCysLeuValGlyPheGlnValLeuValGluAsn 1699943 : ATGTCTGGTTGGATTCCAAGTGCTCGTAGAAAAC : 1699977 vulgar: gi|528747924|gb|AGS43057.1| 94 245 . KQ414915.1 1699025 1699977 + 277 M 37 111 5 0 2 I 0 495 3 0 2 M 114 342 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699026 1699977 277 + . gene_id 2 ; sequence gi|528747924|gb|AGS43057.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1699026 1699136 . + . KQ414915.1 exonerate:protein2genome:local exon 1699026 1699136 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1699137 1699138 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1699137 1699635 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1699634 1699635 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1699636 1699977 . + . KQ414915.1 exonerate:protein2genome:local exon 1699636 1699977 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699026 1699977 277 + . alignment_id 2 ; Query gi|528747924|gb|AGS43057.1| ; Align 1699026 95 111 ; Align 1699636 132 342 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747924|gb|AGS43057.1| odorant receptor Or2h [Cephus cinctus] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 238 Query range: 97 -> 236 Target range: 1711237 -> 1712206 98 : AsnIleGlyLysThrGlyThrAspLysIleLeuProPheThrMetTrpLeuAsnGl : 116 |||||||||!:!!.!! !:!!|||!:!||||||||||||! !||||||:!!:!! AsnIleGlyArgAsnGluSerAspArgIleLeuProPheLysMetTrpIleAspIl 1711238 : AATATTGGAAGAAACGAATCCGACAGAATACTGCCGTTTAAAATGTGGATTGATAT : 1711292 117 : uThrMetAlaArgAlaProTyrPheGlnLeuLeuPheIlePheGlu >>>> Tar : 132 ! !!! :!!! !.!!|||||||||::::::...||| !!.:!! eProThrSerMetThrProTyrPheGluIlePhePheThrLeuGln++ 1711293 : ACCGACATCGATGACACcgtattttgaaatattcttcaccTTACAGgt........ : 1711342 133 : get Intron 1 >>>> GlyIleIleLeuCysTyrLeuGlyValGlyPhePheC : 144 546 bp ! !:!! ! !! ! ! :!!||||||.!!!:! !| ++ValLeuSerAlaTyrGlnIleGlyValSerTyrGlyC 1711343 : .................agGTTTTATCCGCGTATCAAATTGGCGTGAGTTACGGTT : 1711922 145 : ysIleAspAsnPhePheCysIleIleAsnIleHisValAlaGlyGlnPheLysIle : 162 ||.!!|||||| !!.!.||||||!!:|||:!!|||:!!||| !||||||::!||| ysPheAspAsnValLeuCysIleMetAsnLeuHisLeuAlaThrGlnPheArgIle 1711923 : GCTTCGACAACGTTCTATGCATCATGAACCTACACTTGGCCACTCAGTTTCGAATA : 1711976 163 : LeuGlnGlyLysLeuGluArgLeuCysGlyProAsnAspArgGluAspGluLysLy : 181 |||||| !!:!|||! !!.!:!! !|||! !!!...!!:!:!! !:!!|| LeuGlnHisArgLeuValAsnIleAsnGlyLeuLysSerLysGlnThrProGluLy 1711977 : CTGCAACATAGACTGGTGAATATAAACGGTCTGAAGAGCAAACAGACACCGGAGAA : 1712033 182 : sAspArgGlyIleTrpIleArgLysAsnProAlaAla<-><->ValPheGlnGluP : 198 |! !..! ! ||| !..!!.. ! !||| !!:!.!.! | sGlyGluThrSerIleIleAspSerThrGluPheAlaAspAsnSerTyrAspValP 1712034 : AGGTGAAACGTCGATTATAGATTCGACAGAATTTGCGGATAACTCTTACGACGTTT : 1712090 199 : heArgSerCysValGlnLeuHisLysMetLeuIleTyrTyrValGluLysValGlu : 216 ||!:!!!!||||||!::! !|||:!! |||!!: !!:! ||||||:::||| heLysArgCysValArgGlnHisGlnSerLeuMetAlaPheCysGluLysLeuGlu 1712091 : TCAAAAGATGCGTTCGTCAACATCAATCTCTGATGGCTTTCTgcgagaaactcgaa : 1712144 217 : AlaIlePheSerLeuIleIleLeuCysGlnValIleLeuSerSerIleLeuMetCy : 235 :::||||||:!!||||||||| ! |||:!!:!!:!!! !||||||!!!||||| GluMetPheSerMetIleIleLeuGlyGlnLeuLeuValPheSerIlePheMetCy 1712145 : gaaatgTTCAGTATGATTATACTGGGGCAATTGTTAGTGTTCAGTATTTTTATGTG : 1712201 236 : sLeu : 236 |||| sLeu 1712202 : TCTC : 1712206 vulgar: gi|528747924|gb|AGS43057.1| 97 236 . KQ414915.1 1711237 1712206 + 238 M 34 102 5 0 2 I 0 542 3 0 2 M 62 186 G 0 6 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1711238 1712206 238 + . gene_id 3 ; sequence gi|528747924|gb|AGS43057.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1711238 1711339 . + . KQ414915.1 exonerate:protein2genome:local exon 1711238 1711339 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1711340 1711341 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1711340 1711885 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1711884 1711885 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1711886 1712206 . + . KQ414915.1 exonerate:protein2genome:local exon 1711886 1712206 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1711238 1712206 238 + . alignment_id 3 ; Query gi|528747924|gb|AGS43057.1| ; Align 1711238 98 102 ; Align 1711886 132 186 ; Align 1712078 194 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747924|gb|AGS43057.1| odorant receptor Or2h [Cephus cinctus] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 196 Query range: 132 -> 242 Target range: 1702019 -> 1702349 133 : IleIleLeuCysTyrLeuGlyValGlyPhePheCysIleAspAsnPhePheCysIl : 151 :!: !|||! !:!!:!!|||||| !!!:!.!!|||.!!||||||.!!!!.|||:! LeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAsnLeuLeuCysLe 1702020 : CTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAACCTTTTGTGTTT : 1702074 152 : eIleAsnIleHisValAlaGlyGlnPheLysIleLeuGlnGlyLysLeuGluArgL : 170 :!!:|||:!:|||!.!||| !||||||:::||||||||| !!:!|||..!!.!| uMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsnL 1702075 : GATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACAGGTTATCGAACT : 1702131 171 : euCysGlyProAsnAspArgGluAspGluLysLysAspArgGlyIleTrpIleArg : 188 || !!! ! !!||| !:!:!!! !!: ! !!.!!: !.!! ! :!: ! euGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSerAlaAlaLeuSer 1702132 : TGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGCGCAGCTCTGTCT : 1702185 189 : LysAsnProAlaAlaValPheGlnGluPheArgSerCysValGlnLeuHisLysMe : 207 ::: ! !!! ! ! !!:!:!!! !|||!:!!:!||||||!:!! !|||:!!! ArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValArgGlnHisGlnAs 1702186 : CGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACGACAACATCAGAA : 1702242 208 : tLeuIleTyrTyrValGluLysValGluAlaIlePheSerLeuIleIleLeuCysG : 226 ! !||| ||| !.!.!:!:!!.!.! !||||||!!!:!!|||:!!||| ! ! nHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValIleValLeuGlyH 1702243 : TCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCATTGTACTCGGAC : 1702299 227 : lnValIleLeuSerSerIleLeuMetCysLeuAlaGlyPheGlnAlaVal : 242 !.:!!:!!:!!! !|||:!!|||!!:||||||!.!|||||||||!.!:!! isIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGlnValLeu 1702300 : ACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAAGTGCTC : 1702349 vulgar: gi|528747924|gb|AGS43057.1| 132 242 . KQ414915.1 1702019 1702349 + 196 M 110 330 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702020 1702349 196 + . gene_id 4 ; sequence gi|528747924|gb|AGS43057.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702020 1702349 . + . KQ414915.1 exonerate:protein2genome:local exon 1702020 1702349 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702020 1702349 196 + . alignment_id 4 ; Query gi|528747924|gb|AGS43057.1| ; Align 1702020 133 330 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747924|gb|AGS43057.1| odorant receptor Or2h [Cephus cinctus] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 191 Query range: 127 -> 240 Target range: 1694854 -> 1695193 128 : PheIlePheGluGlyIleIleLeuCysTyrLeuGlyValGlyPhePheCysIleAs : 146 .!..!!.!.:!! !:!! !:!!! !:!!:!!|||:!! !!!:!.!.|||.!!|| LeuPheLeuGlnThrLeuCysValTyrHisValGlyIleCysTyrMetCysPheAs 1694855 : CTATTTCTGCAGACACTTTGCGTGTACCATGTCGGTATATGTTACATGTGCTTCGA : 1694909 147 : pAsnPhePheCysIleIleAsnIleHisValAlaGlyGlnPheLysIleLeuGlnG : 165 ||||.!!.!! !!:!!:!:|||:!!||||||||| !||||||:::||||||||| pAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGlnPheArgIleLeuGlnT 1694910 : CAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAATTTCGTATCCTTCAAT : 1694966 166 : lyLysLeuGluArgLeuCysGlyProAsnAspArgGluAspGluLysLysAspArg : 183 !::!!!! !!.!||| !!..! !! !!!:!:!:!! !!: :::::: yrArgPheMetAsnLeuSerAsnValIleGluLysGlnThrAspGlyArgGluLeu 1694967 : ACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAACAGACGGTcgagaattg : 1695020 184 : GlyIleTrpIleArgLysAsnProAlaAlaValPheGlnGluPheArgSerCysVa : 202 ||| !! !!!. ! !!!.!! ! !!:! !:!!!!.!:!|||||||| GluIleGlyTyrThrAsnPheThrValAspSerTyrLeuGlnLeuLysSerCysVa 1695021 : gaaattggtTACACAAATTTCACAGTCGATAGTTACTTACAATTGAAGAGTTGCGT : 1695077 203 : lGlnLeuHisLysMetLeuIleTyrTyrValGluLysValGluAlaIlePheSerL : 221 ||||! !|||:!! |||! ! !||| !:!!|||:!!||| !|||||||||| lGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeuGluAsnIlePheSerL 1695078 : GCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTGGAGAACATATTTTCGT : 1695134 222 : euIleIleLeuCysGlnValIleLeuSerSerIleLeuMetCysLeuAlaGlyPhe : 239 ||:!!:!:||| ! ||||||:!!!!! !:!!!!::!!:!:||||||!.!|||!:! euLeuValLeuGlyGlnValLeuPheLeuAlaMetValLeuCysLeuValGlyTyr 1695135 : TGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTACTTTGCCTCGTGGGATAT : 1695188 240 : Gln : 240 ||| Gln 1695189 : CAG : 1695193 vulgar: gi|528747924|gb|AGS43057.1| 127 240 . KQ414915.1 1694854 1695193 + 191 M 113 339 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694855 1695193 191 + . gene_id 5 ; sequence gi|528747924|gb|AGS43057.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1694855 1695193 . + . KQ414915.1 exonerate:protein2genome:local exon 1694855 1695193 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694855 1695193 191 + . alignment_id 5 ; Query gi|528747924|gb|AGS43057.1| ; Align 1694855 128 339 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747924|gb|AGS43057.1| odorant receptor Or2h [Cephus cinctus] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 187 -> 240 Target range: 1682085 -> 1682244 188 : ArgLysAsnProAlaAlaValPheGlnGluPheArgSerCysValGlnLeuHisLy : 206 ::::::... |||!.!:!!!:!:!!||||||!:!..!|||||||||! !||| ! LysGluLysSerAlaGlyLeuTyrLysGluPheLysGluCysValGlnTyrHisHi 1682086 : aaagaaaaatcagctGGACTGTATAAAGAGTTCAAGGAGTGCGTACAGTATCATCA : 1682140 207 : sMetLeuIleTyrTyrValGluLysValGluAlaIlePheSerLeuIleIleLeuC : 225 :!!|||:!!! ||||||||||||:::||| :!!|||!!!:!! :!::!! sLeuLeuLeuSerTyrValGluLysLeuGluTyrValPheCysValProLeuMetI 1682141 : TTTGCTTCTTTCGtacgtggaaaaattggaatacgTATTTTGTGTCCCGTTGATGA : 1682197 226 : ysGlnValIleLeuSerSerIleLeuMetCysLeuAlaGlyPheGln : 240 !|||:!!:!::!!|||||||||:!!:!!|||:!!:!!||||||||| leGlnLeuLeuValSerSerIleValLeuCysValSerGlyPheGln 1682198 : TTCAATTGCTGGTGTCTAGCATAGTTCTGTGCGTCTCGGGGTTTCAA : 1682244 vulgar: gi|528747924|gb|AGS43057.1| 187 240 . KQ414915.1 1682085 1682244 + 140 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682086 1682244 140 + . gene_id 6 ; sequence gi|528747924|gb|AGS43057.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1682086 1682244 . + . KQ414915.1 exonerate:protein2genome:local exon 1682086 1682244 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1682086 1682244 140 + . alignment_id 6 ; Query gi|528747924|gb|AGS43057.1| ; Align 1682086 188 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747924|gb|AGS43057.1| odorant receptor Or2h [Cephus cinctus] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 127 -> 179 Target range: 1681938 -> 1682094 128 : PheIlePheGluGlyIleIleLeuCysTyrLeuGlyValGlyPhePheCysIleAs : 146 ||| !!!.:!! !:!! !:!! :!!! !|||:!! !!|||! !|||.!!|| PheThrLeuGlnThrLeuSerValValHisSerGlyIleCysPheCysCysPheAs 1681939 : ttcaCTTTGCAGACATTATCTGTGGTGCATTCGGGAATTTGTTTCTGTTGTTTCGA : 1681993 147 : pAsnPhePheCysIleIleAsnIleHisValAlaGlyGlnPheLysIleLeuGlnG : 165 |||||||.!.||||||:!:!:!!!:||||||!.!|||||||||||||||||||||. pAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPheLysIleLeuGlnA 1681994 : CAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTTAAGATTTTACAAA : 1682050 166 : lyLysLeuGluArgLeuCysGlyProAsnAspArgGluAspGlu : 179 .!||||||:!!! !:!!! .!! !!!.... ::::::::: snLysLeuGlnThrValLeuSerGluLysSerSerLysGluLys 1682051 : ACAAACTCCAAACAGTATTGAGTGAGAAatcttcgaaagaaaaa : 1682094 vulgar: gi|528747924|gb|AGS43057.1| 127 179 . KQ414915.1 1681938 1682094 + 118 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681939 1682094 118 + . gene_id 7 ; sequence gi|528747924|gb|AGS43057.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1681939 1682094 . + . KQ414915.1 exonerate:protein2genome:local exon 1681939 1682094 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681939 1682094 118 + . alignment_id 7 ; Query gi|528747924|gb|AGS43057.1| ; Align 1681939 128 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747940|gb|AGS43065.1| odorant receptor Or3f [Cephus cinctus] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 167 Query range: 300 -> 411 Target range: 807254 -> 807587 301 : ValGlyTyrTyrIleIleThrGlyPheGluSerAlaAspThrValArgPheIleThrP : 320 ..!|||!:! !.!!:!:..!!.!.!....!!! !|||!.!||| ! :!:! ! ThrGlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgS 807255 : ACAGGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGA : 807312 321 : heThrLeuLeuPheIleSerPheThrPheAsnIlePheValPheCysTyrIleGlyGl : 339 ! !:!!|||.!.:!:!!!!!. !.!!.!.:!:!:!:!!!:!..!||| |||.! erPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807313 : GCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 340 : nIleLeuThrAsnHisCysHisGlnIleGlyGluAlaSerTyrMetIleAspTrpTyr : 358 .! !||| !:::!.. !.!.:!!|||!.!:!!|||:!!||| ! !|||||| nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 359 : ArgPheProGlyThrGlnAlaArgPheLeuIleLeuLeuIleGlyValAlaAsnArgP : 378 |||! !! !||| ! !|||||| !|||:!!|||:!!||| ! !!.!||| !| ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 379 : roIleArgLeuThrAlaGlyLysMetValGlnPheSerPheProCysPheCysAsnVa : 397 || !|||:!!||||||||||||.!.|||! !.!.!:!.!! ! !||| .!.:! roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 398 : lIleLysAlaAlaMetAlaTyrLeuAsnIleIleArgThrVal : 411 !:!:||||||:!! :!!||||||::!:!!!!:!:!..!:!! eLeuLysAlaSerGlySerTyrLeuSerValMetLysValMet 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: gi|528747940|gb|AGS43065.1| 300 411 . KQ414940.1 807254 807587 + 167 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807255 807587 167 + . gene_id 1 ; sequence gi|528747940|gb|AGS43065.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807255 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807255 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807255 807587 167 + . alignment_id 1 ; Query gi|528747940|gb|AGS43065.1| ; Align 807255 301 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747932|gb|AGS43061.1| odorant receptor Or3b, partial [Cephus cinctus] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 180 -> 284 Target range: 806538 -> 806850 181 : ValTyrAlaTyrGluGlyValLeuValProIleIleAlaCysGlyTyrSerGlyThrA : 200 |||! ! :!!|||:!!! !:!! !.!!! !||| !.!:!!!!!|||!.!| ValLeuLeuLeuGlnGlyMetHisIlePhePheAsnAlaValAlaHisCysGlyAsnA 806539 : GTGTTACTGCTGCAAGGGATGCACATTTTCTTCAACGCCGTGGCTCACTGCGGCAACG : 806596 201 : spCysLeuLeuValThrLeuThrLeuHisLeuCysAlaGlnIleSerValLeuAlaAs : 219 || !!|||!!! !!!:!||||||:!!|||||||||!.!|||.!!..!:!!||| !! spGlyLeuPhePheSerLeuThrMetHisLeuCysGlyGlnPheGluIleLeuLysMe 806597 : ACGGCCTCTTCTTCAGCCTGACGATGCATCTGTGCGGTCAGTTTGAAATTCTGAAGAT : 806653 220 : nGlnValGluAsnLeuAsnGlyAspPheArgLysPheHisSerHisLeuLysGlnVal : 238 .!.:!!! !.!.:!!.!. !!!: ! ! ! !!..!.!!..:!! :!! tAsnLeuAlaGluIleGluPheGluAlaIleAlaCysArgLysArgIleGlyValLeu 806654 : GAATCTGGCGGAGATCGAGTTCGAGGCGATCGCTTGTCGGAAGCGAATCGGCGTTCTC : 806710 239 : ValThrLysHisSerArgIleIleSerLeuSerValLysLeuArgThrAlaPheAlaT : 258 |||! !::!|||!!!!:!:!: !|||!!! ! ! |||..! !::!|||::! ValLysArgHisCysLysLeuAlaValLeuThrAsnAspLeuGluGlnSerPheSerM 806711 : GTGAAACGACACTGCAAACTGGCGGTGTTGACCAACGATCTCGAGCAGAGCTTCAGTA : 806770 259 : yrPheLeuLeuValGlnLeuValGlyAlaThrLeuValValCysLeuAlaIleTyrAs : 277 .!!:!!||||||||||||:!! !::!.!!|||:!!:!!|||:!!! ! ! ! :: etIleIleLeuValGlnLeuMetMetSerAlaLeuLeuIleCysValGluGlyGluSe 806771 : TGATTATTCTGGTGCAACTCATGATGAGTGCGTTGCTAATTTGCGTAGAAGGTGAGTC : 806827 278 : nLeuLeuLysAsnTyrAlaThr : 284 :|||!!! !!!. ::!||| rLeuPheGlyLysValSerThr 806828 : GTTGTTCGGAAAAGTAAGTACC : 806850 vulgar: gi|528747932|gb|AGS43061.1| 180 284 . KQ414940.1 806538 806850 + 114 M 104 312 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806539 806850 114 + . gene_id 1 ; sequence gi|528747932|gb|AGS43061.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 806539 806850 . + . KQ414940.1 exonerate:protein2genome:local exon 806539 806850 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 806539 806850 114 + . alignment_id 1 ; Query gi|528747932|gb|AGS43061.1| ; Align 806539 181 312 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 179 Query range: 301 -> 409 Target range: 807257 -> 807581 302 : GlyTyrTyrPheIleThrGlyLeuGluThrAlaAspThrAlaArgPheValThrPheA : 321 |||!:! !|||:!:..!!.!|||...||| !|||!.!!.! ! :!!! ! ! GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 322 : laLeuLeuPheIleSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGlnLe : 340 !:!!|||.!.:!:!!!!!. !.!!.!.:!:!:!:!!!:!..!||| |||.!. heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 341 : uLeuThrAsnHisCysHisGlnIleGlyGluIleSerTyrThrIleAspTrpTyrArg : 359 !||| !:::!.. !.!.:!!|||!.!:!! !:!!||| ! ! !||||||||| rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 360 : IleProGlyAlaGlnAlaArgPheLeuIleLeuLeuIleAlaIleAlaAsnArgProV : 379 !! !||| ! !|||||| !|||:!!|||:!!||| ! !!.!||| !||| CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 380 : alThrIleThrAlaGlyLysIleValGlnLeuSerPheProCysPheArgAspValLe : 398 ! !|||||||||||||||.!!|||! !:!!!:!.!! ! !|||!:!!!::!!|| yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 399 : uLysAlaAlaLeuAlaTyrLeuAsnMetLeuArg : 409 |||||||:!! !:!!||||||::!:!::!!!:! uLysAlaSerGlySerTyrLeuSerValMetLys 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: gi|528747938|gb|AGS43064.1| 301 409 . KQ414940.1 807257 807581 + 179 M 108 324 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807581 179 + . gene_id 1 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807581 179 + . alignment_id 1 ; Query gi|528747938|gb|AGS43064.1| ; Align 807258 302 324 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747912|gb|AGS43051.1| odorant receptor Or2b [Cephus cinctus] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 279 -> 386 Target range: 807266 -> 807593 280 : PheGlnLeuThrSerMetLeuGluAspArgGlyArgLeuMetLysTyrSerThrPheL : 299 |||! !:!!.!! !! !:!!|||!.!! ! ! !:!!!:! !! !..!.!.: PheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheValLeuM 807267 : TTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCGTTCTGA : 807324 300 : euAsnSerAlaIleLeuGluLeuPheIlePheSerPheSerGlyAsnGluLeuIleVa : 318 !! !!! !:!::!!:!!|||!:!:!!!:!:!!!:!:!!|||||| !||| etValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluSe 807325 : TGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGTC : 807381 319 : lGluSerGluAlaValGlyAspAlaAlaTyrArgSerAspTrp<-><->AlaSerSer : 335 !..!!!!|||! !:!!!.!.!.||||||||| !||| !||| ..! !.!! rArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGly 807382 : GCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGGG : 807438 336 : SerPheThrGlnSerLeuArgIleLeuMetMetArgAlaThrLeuProSerArgIleT : 355 ! .!!::!..!|||! !:!::!!!!: |||!.!!.!! !|||! !||||||| HisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIleT 807439 : CACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATAA : 807498 356 : hrAlaAlaLysPheTyrSerMetSerLeuGluSerPheSerAlaValLeuSerThrSe : 374 |||||!.!|||||| ! !!|||!:!||| !!!|||!.!! !:!!|||!.!.!!|| hrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaSe 807499 : CAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTTC : 807555 375 : rPheSerTyrPheThrValLeuLysAlaValSerGlu : 386 | !||||||.!.:!!|||:!!|||!.!:!!! !!!: rGlySerTyrLeuSerValMetLysValMetMetAsp 807556 : TGGCTCGTATCTGTCTGTAATGAAGGTAATGATGGAC : 807593 vulgar: gi|528747912|gb|AGS43051.1| 279 386 . KQ414940.1 807266 807593 + 124 M 53 159 G 0 6 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807267 807593 124 + . gene_id 1 ; sequence gi|528747912|gb|AGS43051.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807267 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807267 807593 . + . insertions 6 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807267 807593 124 + . alignment_id 1 ; Query gi|528747912|gb|AGS43051.1| ; Align 807267 280 159 ; Align 807432 333 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747936|gb|AGS43063.1| odorant receptor Or3d [Cephus cinctus] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 213 -> 302 Target range: 806574 -> 806832 214 : AlaValSerSerAlaAlaValAspSerLeuLeuValThrAlaValPheHisValCysG : 233 ||||||:!! !..!!.! !|||.!!|||!!! !!!:! !..!.!.|||:!!|||| AlaValAlaHisCysGlyAsnAspGlyLeuPhePheSerLeuThrMetHisLeuCysG 806575 : GCCGTGGCTCACTGCGGCAACGACGGCCTCTTCTTCAGCCTGACGATGCATCTGTGCG : 806632 234 : lyGlnLeuGluIleLeuArgLysTyrPheGluAsnLeuHisSerSerGluThrAlaLe : 252 |||||!!!|||||||||!:!! ! |||||| ..!! !||| !! ! lyGlnPheGluIleLeuLysMet---------AsnLeuAlaGluIleGluPheGluAl 806633 : GTCAGTTTGAAATTCTGAAGATG---------AATCTGGCGGAGATCGAGTTCGAGGC : 806680 253 : uGluGluThrGluLysLysValAlaAlaAlaIleLysArgHisSerLysLeuIleAsp : 271 ! ! !..!|||::!:!!!.!!.! !:!:|||||||||!!!|||||| ! aIleAlaCysArgLysArgIleGlyValLeuValLysArgHisCysLysLeuAlaVal 806681 : GATCGCTTGTCGGAAGCGAATCGGCGTTCTCGTGAAACGACACTGCAAACTGGCGGTG : 806737 272 : LeuCysAspLeuIleGluAspCysTyrSerGlnIleThrLeuSerGlnLeuLeuValA : 291 ||| !:!! !:!!|||.!. !!!:!|||..!|||! !||| !||||||:!!:!!: LeuThrAsnAspLeuGluGlnSerPheSerMetIleIleLeuValGlnLeuMetMetS 806738 : TTGACCAACGATCTCGAGCAGAGCTTCAGTATGATTATTCTGGTGCAACTCATGATGA : 806797 292 : laSerLeuAsnValCysLeuSerGlyPheGlyLeu : 302 :!:!!||| :!!|||:!!..!||| ..!||| erAlaLeuLeuIleCysValGluGlyGluSerLeu 806798 : GTGCGTTGCTAATTTGCGTAGAAGGTGAGTCGTTG : 806832 vulgar: gi|528747936|gb|AGS43063.1| 213 302 . KQ414940.1 806574 806832 + 112 M 27 81 G 3 0 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 806575 806832 112 + . gene_id 1 ; sequence gi|528747936|gb|AGS43063.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 806575 806832 . + . KQ414940.1 exonerate:protein2genome:local exon 806575 806832 . + . insertions 0 ; deletions 3 KQ414940.1 exonerate:protein2genome:local similarity 806575 806832 112 + . alignment_id 1 ; Query gi|528747936|gb|AGS43063.1| ; Align 806575 214 81 ; Align 806656 244 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747920|gb|AGS43055.1| odorant receptor Or2f [Cephus cinctus] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 168 Query range: 237 -> 333 Target range: 117638 -> 118059 238 : AspLeuLeuLysPheLeuGlyLeuPheMetValPheIleMetGlnMetLeuPheValC : 257 ||| !! !|||!:!:!!.!!! !.!! !:!! !|||!!:|||:!:!!!.!! ! AspLysTyrLysTyrIleSerGlnLeuSerIleAlaIleIleGlnLeuPheLeuCysA 117639 : GATAAATACAAGTACATCAGCCAACTCTCGATAGCCATCATCCAGCTTTTCCTCTGCA : 117696 258 : ysTrpProAlaAspTyrLeuSerSerGlu >>>> Target Intron 1 >>>> : 267 !||||||||||||!:!|||! !|||:!! 63 bp snTrpProAlaAspPheLeuTyrSerLys++ ++ 117697 : ATTGGCCCGCAGATTTCCTCTACTCGAAGgt.........................ag : 117787 268 : SerThrAsnIleAlaPheAlaPheTyrAsnCysSerTrpTyrAsnTyrGluLysSerI : 286 ||| ! |||!.! !||| !|||!.. !!|||:!! ||| :::!!!: SerGluAlaIleGlyArgAlaAlaTyrThrValProTrpHisTrpTyrProArgCysL 117788 : AGCGAAGCGATCGGTCGTGCAGCCTATACGGTGCCTTGGCATTGGTACCCTCGTTGCT : 117846 287 : leGlySerSerIleGlnIleAlaIleAlaArgSerGlnAsnProValAlaLeuThrAl : 305 !: !!!.! !!! !.!.!!: !!!: !|||.!!|||!!.|||||| !|||||||| euArgLysProThrAsnMetLeuMetIleArgGlyGlnLysProValArgLeuThrAl 117847 : TGCGAAAACCAACCAACATGCTGATGATCAGAGGTCAGAAACCGGTTCGTCTGACCGC : 117903 306 : aGlyLysPheValIleMetSerLeuGluThrPheThrSer >>>> Target Intr : 319 |||||||.!!||| !:!:|||||||||||||||.!!||| 70 bp aGlyLysIleValGlyLeuSerLeuGluThrPheAlaSer++ 117904 : CGGAAAAATCGTCGGACTCTCTCTGGAAACGTTTGCCTCTgt................ : 117947 320 : on 2 >>>> IleLeuSerSerAlaMetSerPhePheAlaValLeuLysSerIle : 333 !!::!!|||||||||:!!|||||||||.!!|||:!!::!!!!!!: ++MetIleSerSerAlaValSerPhePheThrValValArgThrMet 117948 : .........agATGATATCGTCGGCCGTGTCCTTCTTCACCGTCGTTCGAACCATG : 118059 vulgar: gi|528747920|gb|AGS43055.1| 237 333 . KQ414940.1 117638 118059 + 168 M 29 87 5 0 2 I 0 59 3 0 2 M 52 156 5 0 2 I 0 66 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 117639 118059 168 + . gene_id 1 ; sequence gi|528747920|gb|AGS43055.1| ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 117639 117725 . + . KQ414940.1 exonerate:protein2genome:local exon 117639 117725 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 117726 117727 . + . intron_id 1 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 117726 117788 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 117787 117788 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 117789 117944 . + . KQ414940.1 exonerate:protein2genome:local exon 117789 117944 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 117945 117946 . + . intron_id 2 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 117945 118014 . + . intron_id 2 KQ414940.1 exonerate:protein2genome:local splice3 118013 118014 . + . intron_id 1 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 118015 118059 . + . KQ414940.1 exonerate:protein2genome:local exon 118015 118059 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 117639 118059 168 + . alignment_id 1 ; Query gi|528747920|gb|AGS43055.1| ; Align 117639 238 87 ; Align 117789 267 156 ; Align 118015 319 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747920|gb|AGS43055.1| odorant receptor Or2f [Cephus cinctus] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 239 -> 331 Target range: 807305 -> 807581 240 : LeuLysPheLeuGlyLeuPheMetValPheIleMetGlnMetLeuPheValCysTrpP : 259 |||!:! !!!!! !|||.!.:!!..!!!.:!:!!:|||:!!! !.!! !..!!:: LeuArgSerPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrA 807306 : TTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACG : 807363 260 : roAlaAspTyrLeuSerSerGluSerThrAsnIleAlaPheAlaPheTyrAsnCysSe : 278 !!!.!:!! |||..!|||..!!!! !.!.|||||| ||| !|||:!!! ! laGlyAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLe 807364 : CGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCT : 807420 279 : rTrpTyrAsnTyrGluLysSerIleGlySerSerIleGlnIleAlaIleAlaArgSer : 297 !||||||..!! !.!. ! ! !!.!!!!..!:!!! :!: !||| !|||.!! uTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGly 807421 : TTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGA : 807477 298 : GlnAsnProValAlaLeuThrAlaGlyLysPheValIleMetSerLeuGluThrPheT : 317 .!.:::||| ! !:!!|||||||||||||||||| |||!:!||| ||||||! AsnSerProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheL 807478 : AATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCA : 807537 318 : hrSerIleLeuSerSerAlaMetSerPhePheAlaValLeuLys : 331 !..!||||||!.!:!!:!! |||!:!.!.:!!|||:!!||| ysGluIleLeuLysAlaSerGlySerTyrLeuSerValMetLys 807538 : AGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: gi|528747920|gb|AGS43055.1| 239 331 . KQ414940.1 807305 807581 + 131 M 92 276 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807306 807581 131 + . gene_id 2 ; sequence gi|528747920|gb|AGS43055.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807306 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807306 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807306 807581 131 + . alignment_id 2 ; Query gi|528747920|gb|AGS43055.1| ; Align 807306 240 276 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747914|gb|AGS43052.1| odorant receptor Or2c [Cephus cinctus] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 331 Query range: 211 -> 349 Target range: 117450 -> 118059 212 : LysTyrHisGlnThrValLeuLysLeuCysLysAspIleGluLysValThrAsnLysA : 231 :::! :!!! ! !:!!!!!!:!!!!|||:!!|||||||||:::||||||||| ! ArgLeuTyrLeuAspIlePheArgPheCysGlnAspIleGluArgValThrAsnValM 117451 : CGCTTGTATCTGGACATTTTCAGGTTTTGCCAGGACATCGAACGTGTTACGAACGTGA : 117508 232 : laPheLeuValGlnLeuIleThrSerThrTyrSerIleSerAlaIleGlyPheLysMe : 250 !|||!!!..!||||||.!! !|||||||||!:!|||||| !:!:|||||||||:! etPhePheThrGlnLeuPheGlySerThrTyrAsnIleSerLeuValGlyPheLysLe 117509 : TGTTTTTCACGCAGCTGTTCGGTAGCACGTACAACATATCTTTAGTGGGCTTCAAGTT : 117565 251 : t >>>> Target Intron 1 >>>> AsnAspSerAspLysSerLysTyrValT : 260 ! 62 bp :!!||| !!||||||! !||||||:!!! u-+ ++AspAspProAspLysTyrLysTyrIleS 117566 : Gat.........................agGACGATCCTGATAAATACAAGTACATCA : 117657 261 : hrGlnIleValLeuSerLeuValGlnLeuPheLeuCysAsnTrpProProAspValLe : 279 :!|||:!! !:!!:!!:!!:!!|||||||||||||||||||||||| !!||| !!|| erGlnLeuSerIleAlaIleIleGlnLeuPheLeuCysAsnTrpProAlaAspPheLe 117658 : GCCAACTCTCGATAGCCATCATCCAGCTTTTCCTCTGCAATTGGCCCGCAGATTTCCT : 117714 280 : uGlnAsnGlu >>>> Target Intron 2 >>>> SerGlnAlaValAlaTyrA : 289 | ! ::::!! 63 bp |||:!!|||:!!!.! !| uTyrSerLys++ ++SerGluAlaIleGlyArgA 117715 : CTACTCGAAGgt.........................agAGCGAAGCGATCGGTCGTG : 117807 290 : laAlaTyrPheMetProTrpTyrArgCysSerArgAspValLysLysSerThrGluIl : 308 |||||||| :!!||||||:!! !!! ! !!||| !:!!::!||| !!|||.!.!! laAlaTyrThrValProTrpHisTrpTyrProArgCysLeuArgLysProThrAsnMe 117808 : CAGCCTATACGGTGCCTTGGCATTGGTACCCTCGTTGCTTGCGAAAACCAACCAACAT : 117864 309 : eIleIleMetArgGlyGlnArgValValArgLeuThrAlaGlyAsnPheValAspLeu : 327 ::!:!!:!!:|||||||||!:! !||||||||||||||||||!!..!!|||! ||| tLeuMetIleArgGlyGlnLysProValArgLeuThrAlaGlyLysIleValGlyLeu 117865 : GCTGATGATCAGAGGTCAGAAACCGGTTCGTCTGACCGCCGGAAAAATCGTCGGACTC : 117921 328 : SerLeuGluThrPheIleArg >>>> Target Intron 3 >>>> MetValSe : 337 ||||||||||||||| ! ! 70 bp |||:!!|| SerLeuGluThrPheAlaSer++ ++MetIleSe 117922 : TCTCTGGAAACGTTTGCCTCTgt.........................agATGATATC : 118021 338 : rSerAlaLeuSerPhePheThrLeuLeuArgSerIle : 349 |||||||:!!||||||||||||:!!:!!|||!!!!!: rSerAlaValSerPhePheThrValValArgThrMet 118022 : GTCGGCCGTGTCCTTCTTCACCGTCGTTCGAACCATG : 118059 vulgar: gi|528747914|gb|AGS43052.1| 211 349 . KQ414940.1 117450 118059 + 331 M 39 117 5 0 2 I 0 58 3 0 2 M 32 96 5 0 2 I 0 59 3 0 2 M 52 156 5 0 2 I 0 66 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 117451 118059 331 + . gene_id 1 ; sequence gi|528747914|gb|AGS43052.1| ; gene_orientation + KQ414940.1 exonerate:protein2genome:local cds 117451 117567 . + . KQ414940.1 exonerate:protein2genome:local exon 117451 117567 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 117568 117569 . + . intron_id 1 ; splice_site "AT" KQ414940.1 exonerate:protein2genome:local intron 117568 117629 . + . intron_id 1 KQ414940.1 exonerate:protein2genome:local splice3 117628 117629 . + . intron_id 0 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 117630 117725 . + . KQ414940.1 exonerate:protein2genome:local exon 117630 117725 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 117726 117727 . + . intron_id 2 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 117726 117788 . + . intron_id 2 KQ414940.1 exonerate:protein2genome:local splice3 117787 117788 . + . intron_id 1 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 117789 117944 . + . KQ414940.1 exonerate:protein2genome:local exon 117789 117944 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local splice5 117945 117946 . + . intron_id 3 ; splice_site "GT" KQ414940.1 exonerate:protein2genome:local intron 117945 118014 . + . intron_id 3 KQ414940.1 exonerate:protein2genome:local splice3 118013 118014 . + . intron_id 2 ; splice_site "AG" KQ414940.1 exonerate:protein2genome:local cds 118015 118059 . + . KQ414940.1 exonerate:protein2genome:local exon 118015 118059 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 117451 118059 331 + . alignment_id 1 ; Query gi|528747914|gb|AGS43052.1| ; Align 117451 212 117 ; Align 117630 251 96 ; Align 117789 283 156 ; Align 118015 335 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747914|gb|AGS43052.1| odorant receptor Or2c [Cephus cinctus] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 110 -> 175 Target range: 117139 -> 117334 111 : ThrGluArgMetLeuProTyrSerLeuIlePheGluCysLysAspSerProCysTyrG : 130 |||! ||| ||||||||| !!!!.!!.!!||| :!!.!.!!!|||!! |||| ThrValArgArgLeuProTyrValPhePheLeuGluValGlnGlnThrProTrpTyrG 117140 : ACGGTTAGACGTTTGCCGTACGTGTTCTTTCTTGAGGTGCAACAAACGCCGTGGTACG : 117197 131 : luIleLeuTyrIleLeuGlnIleLeuThrValIleAsnIleAlaIleThrTyrIleGl : 149 ||||| !! ! !||||||:!:!!!.!!:!!:!:|||:!!!.!||||||! !:!!|| luIleThrCysAlaLeuGlnLeuPheAlaMetLeuAsnValGlyIleThrCysValGl 117198 : AGATCACTTGCGCCCTTCAGCTGTTCGCGATGTTGAACGTCGGCATCACCTGTGTCGG : 117254 150 : yValAspThrIleGlyProValLeuIleLeuThrValSerGlyHisMetLysIleIle : 168 |||||||||||||||||||:!!!!!:!!||| !..!!!!!.!|||.!. ! :!:||| yValAspThrIleGlyProLeuPheValLeuLeuThrCysAlaHisPheAspValIle 117255 : AGTAGACACGATCGGTCCTCTCTTCGTCCTGCTCACTTGTGCTCATTTCGACGTGATT : 117311 169 : GlnAsnArgIleMetSerLeu : 175 !:!::!|||||| !|||||| ArgSerArgIleGluSerLeu 117312 : CGATCTCGAATCGAGAGTTTA : 117334 vulgar: gi|528747914|gb|AGS43052.1| 110 175 . KQ414940.1 117139 117334 + 154 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 117140 117334 154 + . gene_id 2 ; sequence gi|528747914|gb|AGS43052.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 117140 117334 . + . KQ414940.1 exonerate:protein2genome:local exon 117140 117334 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 117140 117334 154 + . alignment_id 2 ; Query gi|528747914|gb|AGS43052.1| ; Align 117140 111 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747914|gb|AGS43052.1| odorant receptor Or2c [Cephus cinctus] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 261 -> 347 Target range: 807323 -> 807581 262 : IleValLeuSerLeuValGlnLeuPheLeuCysAsnTrpProProAspValLeuGlnA : 281 !!:||| !! !|||:!!||||||!:!|||! ! !!:: !! !:!!..!|||:!!: MetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLeuGluS 807324 : ATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACTCGAGT : 807381 282 : snGluSerGlnAlaValAlaTyrAlaAlaTyrPheMetProTrpTyrArgCysSerAr : 300 ::..!!!!:!!! !:!!||| ! ||||||||| ! ! !|||||||||||| ! ! erArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCysHisGl 807382 : CGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGCCACGG : 807438 301 : gAspValLysLysSerThrGluIleIleIleMetArgGlyGlnArgValValArgLeu : 319 ! !!!.! !:!..! ! :!:|||||| ||||||.!. ! ! !|||:!! yHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrArgIle 807439 : GCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATCGTATA : 807495 320 : ThrAlaGlyAsnPheValAspLeuSerLeuGluThrPheIleArgMetValSerSerA : 339 |||||||||!!.|||||| :!!!:!||| ||||||! ..!!!::!!!.!:!!: ThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLysAlaS 807496 : ACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAAAGCTT : 807555 340 : laLeuSerPhePheThrLeuLeuArg : 347 !! !|||!:!.!.:!!:!!:!!!:! erGlySerTyrLeuSerValMetLys 807556 : CTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: gi|528747914|gb|AGS43052.1| 261 347 . KQ414940.1 807323 807581 + 140 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807324 807581 140 + . gene_id 3 ; sequence gi|528747914|gb|AGS43052.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807324 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807324 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807324 807581 140 + . alignment_id 3 ; Query gi|528747914|gb|AGS43052.1| ; Align 807324 262 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747938|gb|AGS43064.1| odorant receptor Or3e [Cephus cinctus] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 145 Query range: 343 -> 408 Target range: 4381 -> 4097 344 : HisCysHisGlnIleGlyGluIleSerTyrThrIleAspTrpTyrArgIleProGlyAlaGl : 364 !!.||| :!!:!!||||||:!: !|||! !! !||||||||| !:!:||| ! !:: GlnCysLeuLysValGlyGluValValTyrMetThrAspTrpTyrTyrLeuProGlnArgAr 4381 : CAGTGCTTGAAAGTTGGTGAAGTGGTTTACATGACAGATTGGTATTATCTGCCACAGAGAAG : 4321 365 : nAlaArgPheLeuIleLeuLeuIleAlaIleAlaAsnArgProValThrIleThrAlaGlyL : 385 ! !! ! !|||||||||:!!|||.!! !:!!||| ! !||| !||||||||||||| gIleLeuAspLeuIleLeuIleIleThrArgSerAsnValValValGluIleThrAlaGlyL 4320 : AATCCTCGATTTAATTCTGATCATTACACGATCGAACGTGGTCGTTGAAATCACCGctggaa : 4258 386 : ysIleValGlnLeuSerPheProCysPheArgAsp >>>> Target Intron 1 >>>> : 397 ||||| ...:::|||.!! ! ||| !!||| 89 bp ysIlePheHisMetSerLeuTyrThrPheGlyAsp++ 4257 : aaatattccatatgTCGCTTTACACGTTCGGCGATgt......................... : 4220 398 : ValLeuLysAlaAlaLeuAlaTyrLeuAsnMetLeu : 408 |||:!!|||.!!!.!!!!|||||||||||||||||| ++ValValLysThrGlyPheAlaTyrLeuAsnMetLeu 4219 : agGTAGTAAAAACAGGATTCGCCTACTTGAATATGCTT : 4098 vulgar: gi|528747938|gb|AGS43064.1| 343 408 . LHQN01027980.1 4381 4097 - 145 M 53 159 5 0 2 I 0 85 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 4098 4381 145 - . gene_id 1 ; sequence gi|528747938|gb|AGS43064.1| ; gene_orientation + LHQN01027980.1 exonerate:protein2genome:local cds 4223 4381 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4223 4381 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local splice5 4221 4222 . - . intron_id 1 ; splice_site "GT" LHQN01027980.1 exonerate:protein2genome:local intron 4134 4222 . - . intron_id 1 LHQN01027980.1 exonerate:protein2genome:local splice3 4134 4135 . - . intron_id 0 ; splice_site "AG" LHQN01027980.1 exonerate:protein2genome:local cds 4098 4133 . - . LHQN01027980.1 exonerate:protein2genome:local exon 4098 4133 . - . insertions 0 ; deletions 0 LHQN01027980.1 exonerate:protein2genome:local similarity 4098 4381 145 - . alignment_id 1 ; Query gi|528747938|gb|AGS43064.1| ; Align 4382 344 159 ; Align 4134 397 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747922|gb|AGS43056.1| odorant receptor Or2g [Cephus cinctus] Target: LHQN01036086.1 Habropoda laboriosa contig36086, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 79 -> 134 Target range: 27 -> 192 80 : LeuIleGluPheThrGluLysAsnPheTrpGlnGlyAspTyrAspSerTyrGlyMetSerValL : 101 ||||||..!||||||:!!:!!!!.||||||!!. !:!!|||:!!||| ! !! !! !:!!| LeuIleArgPheThrGlnGluLysPheTrpHisPheAsnTyrAsnSerArgGluLysLeuIleL 28 : TTAATCAGGTTCACGCAAGAGAAATTCTGGCATTTCAACTATAATTCACGGGAGAAGTTAATTT : 91 102 : euAspAspIleAspArgLysGlyValLeuLeuMetCysThrPheIlePhePheValGlnGlyTh : 122 ||..!!!: ! ! !:!! ! !!..!:!!!!!!!: !.!!|||! !|||! !..!|||||||| euSerGluCysLysLysIleCysThrValPheIleValAlaPheSerPheCysThrGlnGlyTh 92 : TATCCGAGTGCAAGAAGATATGTACCGTTTTCATCGTTGCCTTCAGCTTCTGTACACAGGGCAC : 154 123 : rValIleGlyTyrValLeuThrProIleIleGluAsn : 134 | ! !|||||||||:!!|||||||||:!! ||| rCysAlaGlyTyrValValThrProIleLeuGlyAsn 155 : GTGTGCTGGTTACGTAGTGACACCTATTTTAggtaat : 192 vulgar: gi|528747922|gb|AGS43056.1| 79 134 . LHQN01036086.1 27 192 + 108 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01036086.1 exonerate:protein2genome:local gene 28 192 108 + . gene_id 1 ; sequence gi|528747922|gb|AGS43056.1| ; gene_orientation . LHQN01036086.1 exonerate:protein2genome:local cds 28 192 . + . LHQN01036086.1 exonerate:protein2genome:local exon 28 192 . + . insertions 0 ; deletions 0 LHQN01036086.1 exonerate:protein2genome:local similarity 28 192 108 + . alignment_id 1 ; Query gi|528747922|gb|AGS43056.1| ; Align 28 80 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887655|gb|AGG17944.1| olfactory receptor 11 [Microplitis mediator] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 269 -> 407 Target range: 1306928 -> 1305891 270 : MetPheValLeuCysGlnArgIleGluThrLeuPheSerProIleIleLeuLeuTh : 288 :!:!:! !:!! .!. :::......||||||:::||||||:!!!!!:!! LeuTyrSerValValAsnAspValAsnAsnLeuPheThrProIleValPheValGl 1306928 : TTATACAGCGTGGTGAATGatgtgaataatttatttactccCATCGTTTTCGTACA : 1306874 289 : rValValPheAsnGlyIleAspLeuCysLeuCysIlePheAlaLeuAspLysAspL : 307 !:!!:!! !:!||||||! :!!|||||| !! !||||||:!! ! nLeuLeuThrSerGlyIleValIleCysLeuSerGlyPheAlaVal---------P 1306873 : ACTTCTTACAAGCGGAATAGTAATTTGTTTAAGTGGATTCGCGGTT---------T : 1306826 308 : euSerAspGlyAsnTrpAlaLysValAlaSerSerValThrHisAlaLeuThrLeu : 325 !!..!:!!! ! ! ! .!! ! :!! !!.!! !|||:!!:!! !! !:!!:!! heAspAsnAspAlaArgThrAspIleLeuLysTyrValSerTyrLeuSerSerIle 1306825 : TCGATAACGACGCCCGTACCGATATTCTGAAATACGTATCTTATTTGTCCTCGATT : 1306772 326 : PhePheGlnIleValIleTyrCysGluPheSerHisValAlaThrGluGluThrSe : 344 !::!!.|||:!!:!!:!!!::||| ! !.!!.!.:!! !..!:!!|||!:!! TrpLeuGlnLeuLeuLeuTrpCysLeuProGlyGluIleLeuValGlnGluSerLe 1306771 : TGGTTGCAACTTTTGTTATGGTGTTTGCCCGGTGAAATTCTCGTTCAAGAGAGTTT : 1306715 345 : rLysValGlyGluAlaIleTyr<->AsnSerSerTrpIleTyrPheAspLysLysM : 362 !:!!:!!|||.!.!.!:!!||| ||| ! !!||| ! !!!!. !! uGluIleGlyHisValValTyrLeuAsnValProTrpTyrAsnLeuProProIleT 1306714 : AGAAATAGGACACGTAGTCTACTTAAATGTACCATGGTACAATTTGCCGCCAATTT : 1306658 363 : etLysLysMetLeuLeuIleIleMetMetArgAlaSerLysGluTyrLysPheSer : 380 :!!!:!! |||! !!!:!!:!!::!:||||||..!:!! ! ! !!...!!!!! yrGlnArgLysLeuCysMetMetIleLeuArgAlaGlnGlnTyrCysSerIleThr 1306657 : ACCAGAGAAAACTTTGCATGATGATCCTTAGGGCACAACAATATTGCAGCATCACG : 1306604 381 : ValPheGlyIleLeuIleLeuAspArgGluGlnLeuThrGln >>>> Target : 395 !.!!!. !.!!! !! |||..!! !.!. !||||||... 62 AlaLeuThrPheArgThrLeuSerIleHisThrLeuThrSer++ 1306603 : GCATTAACGTTTCGAACGTTGTCTATTCACACGTTAACGAGCgt............ : 1306557 396 : Intron 1 >>>> IleValLysThrThrMetSerTyrPheThrMetLeuArg : 407 9 bp :!! !!!!.|||.!! ||||||||||||:!!|||||| ++ValPheAsnThrAlaAlaSerTyrPheThrLeuLeuArg 1306556 : .............agGTATTCAATACAGCCGCTTCATATTTCACTTTGCTGCGA : 1305892 vulgar: gi|452887655|gb|AGG17944.1| 269 407 . KQ414608.1 1306928 1305891 - 100 M 34 102 G 3 0 M 45 135 G 0 3 M 43 129 5 0 2 I 0 625 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1305892 1306928 100 - . gene_id 1 ; sequence gi|452887655|gb|AGG17944.1| ; gene_orientation + KQ414608.1 exonerate:protein2genome:local cds 1306560 1306928 . - . KQ414608.1 exonerate:protein2genome:local exon 1306560 1306928 . - . insertions 3 ; deletions 3 KQ414608.1 exonerate:protein2genome:local splice5 1306558 1306559 . - . intron_id 1 ; splice_site "GT" KQ414608.1 exonerate:protein2genome:local intron 1305931 1306559 . - . intron_id 1 KQ414608.1 exonerate:protein2genome:local splice3 1305931 1305932 . - . intron_id 0 ; splice_site "AG" KQ414608.1 exonerate:protein2genome:local cds 1305892 1305930 . - . KQ414608.1 exonerate:protein2genome:local exon 1305892 1305930 . - . insertions 0 ; deletions 0 KQ414608.1 exonerate:protein2genome:local similarity 1305892 1306928 100 - . alignment_id 1 ; Query gi|452887655|gb|AGG17944.1| ; Align 1306929 270 102 ; Align 1306827 307 135 ; Align 1306689 352 129 ; Align 1305931 395 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887651|gb|AGG17942.1| olfactory receptor 10 [Microplitis mediator] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 101 -> 241 Target range: 203813 -> 204233 102 : IleIleThrHisCysLeuGluAsnLeuLysSerAspTrpAlaArgProLysThrLysG : 121 :!!:!! !! !:!!.!.! :!! !..!|||||||||!:! !|||||| ! ValLeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLysLeuLysThrAspP 203814 : GTTCTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAGTTGAAAACGGATT : 203871 122 : lnAspArgLeuGluMetIleLysAsnValAsnIleGlyHisAsnIleThrLysLeuCy : 140 !!:||| !! !||||||:!!.....!...||| !!.. ! !!:!! !||| ! heGluArgAspValMetIleGlnArgThrArgIleThrArgAlaThrSerIleLeuSe 203872 : TCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAACCAGTATACTGAG : 203928 141 : sAlaIlePheMetPheSerGlyGlyValSerTyrHisThrIleMetProIleTrpSer : 159 ! ! !!.!!:|||!!! !.!|||! !!:! ! !:!!:!:|||! ! .!! rTyrAlaLeuIlePheThr---AlaValMetPheMetIleValLeuProArgThrGly 203929 : TTATGCGTTAATATTTACT---GCAGTAATGTTCATGATAGTCCTACCAAGAACCGGT : 203982 160 : GlySerThrValAsnGluAlaAsnGluThrIleArgProLeuValTyrProGlyAsnG : 179 !!!!||| ! !!! !.!!|||||||||! !! ! ! !:!!!:!|||! ! IleThrThrArgTyrValThrAsnGluThrAsnIleLysLysLeuPheProValProT 203983 : ATTACCACTAGATACGTAACAAACGAAACCAACATAAAAAAGCTTTTTCCGGTGCCaa : 204042 180 : luIlePheVal<->AsnCysGlnGluThrProIleTyrGluPheIlePheIleLeuHi : 197 :::::: ::: ...||||||||| !!:!|||.!.!!:|||:!!|||!! hrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluIleMetPheLeuLeuGl 204043 : cttattatatttacgatataTCTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCA : 204099 198 : sLeuThrCysGlyMetValMetGlnThrIleThrThrAlaAlaCysHisLeuAlaAla : 216 .:!!.!! ! !:!!:!!||| ! ! ! !! !!.!!.! !:!!!!! !!.! nMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyValAspAsnPhePheGly 204100 : AATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGA : 204156 217 : ValPheAlaSerHisValCysGlyGlnValAspIleLeuLysSerGlnLeuGlnAsnL : 236 :!!!!. ! !|||:!!|||||||||:!!!!:! !|||:::!!!!:!||| !|||: IleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnI 204157 : ATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGTACACGACTTGCAAACA : 204216 237 : euValAspLysGluSer : 241 !! ! !! !|||!!! leLysHisLeuGluThr 204217 : TAAAACATTTGGAAACT : 204233 vulgar: gi|452887651|gb|AGG17942.1| 101 241 . KQ414617.1 203813 204233 + 111 M 45 135 G 1 0 M 35 105 G 0 3 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203814 204233 111 + . gene_id 1 ; sequence gi|452887651|gb|AGG17942.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203814 204233 . + . KQ414617.1 exonerate:protein2genome:local exon 203814 204233 . + . insertions 3 ; deletions 1 KQ414617.1 exonerate:protein2genome:local similarity 203814 204233 111 + . alignment_id 1 ; Query gi|452887651|gb|AGG17942.1| ; Align 203814 102 135 ; Align 203949 148 105 ; Align 204057 183 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747906|gb|AGS43048.1| odorant receptor Or1c [Cephus cinctus] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence Model: protein2genome:local Raw score: 219 Query range: 137 -> 241 Target range: 456320 -> 456629 138 : LeuLeuLysLysTyrLysIleArgGluArgValThrIleLeuGlyPheSerCysLeuG : 157 :!!:!!!!.::!||| ...:::|||..!.!!! !||||||||| |||| IleIleAsnArgTyrTyrLysPheAsnLysValValPheTyrGlyPheSerMetLeuG 456321 : ATCATCAACCGATactataaatttaacaaagtaGTTTTCTACGGGTTCAGCATGTTAG : 456378 158 : lyCysValLeuValIleAlaLeuIlePhePheValProArgGluThrGlyGluLeuPr : 176 |||||||||||! !|||||||||:!!|||||| !|||! !:!!!.!||| ||||| lyCysValLeuGlyIleAlaLeuLeuPhePheSerProLeuGlnAsnGly---LeuPr 456379 : GATGCGTTTTAGGAATAGCTCTGCTATTTTTCTCGCCTCTGCAGAACGGT---TTGCC : 456432 177 : oIleArgCysTrpTyrProPheAspThrThrValThrProMetHisGlnIleValPhe : 195 |||||||... !|||||||||:!!||||||:!!:!!|||.!.!..:!!|||! !!!. oIleArgAlaLysTyrProPheAsnThrThrIleSerProPheArgGluIleGlyLeu 456433 : CATCAGAGCAAAGTATCCTTTTAACACCACTATATCTCCTTTCCGAGAGATTGGTTTG : 456489 196 : GlyIleGlnSerPheAlaValAlaValGlyMetIleAlaIleIleGlyMetAspAsnT : 215 !.!:!!:!!!!!|||||||||:!!! !|||:!::!:::!|||:!!!.!|||||||||! AlaValGluThrPheAlaValSerGlyGlyLeuLeuSerIleValAlaMetAspAsnI 456490 : GCTGTCGAAACTTTTGCTGTTTCTGGTGGTTTATTGAGCATAGTTGCCATGGACAATA : 456549 216 : hrValPheValLeuCysGlyArgValLeuPheGlnLeuGluIleLeuAlaAlaAsnPh : 234 !..! :!!:!!|||.!!!:!:!! ! !|||!!!!!:!!:||| !!.! !|| leThrAlaMetMetCysSerGlnIleThrAlaGlnPheAspMetLeuAsnValLeuPh 456550 : TCACTGCAATGATGTGCAGCCAGATCACTGCTCAGTTCGATATGTTGAACGTACTTTT : 456606 235 : eGlnSerCysSerLeuAspIle : 241 |:!!!.!|||!!! !.!.:!: eGluLysCysThrSerGlnVal 456607 : TGAGAAGTGTACTAGTCAAGTG : 456629 vulgar: gi|528747906|gb|AGS43048.1| 137 241 . KQ414618.1 456320 456629 + 219 M 36 108 G 1 0 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 456321 456629 219 + . gene_id 1 ; sequence gi|528747906|gb|AGS43048.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 456321 456629 . + . KQ414618.1 exonerate:protein2genome:local exon 456321 456629 . + . insertions 0 ; deletions 1 KQ414618.1 exonerate:protein2genome:local similarity 456321 456629 219 + . alignment_id 1 ; Query gi|528747906|gb|AGS43048.1| ; Align 456321 138 108 ; Align 456429 175 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747906|gb|AGS43048.1| odorant receptor Or1c [Cephus cinctus] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 267 -> 318 Target range: 457520 -> 457673 268 : PhePheGluArgTyrArgLysCysValMetHisHisGlnTyrLeuIleLeuLeuValA : 287 |||.!!...||||||!:!! |||:!!... !|||||| ||||||! !:!!..! PheLeuArgArgTyrLysThrCysLeuGlnPheHisGlnArgLeuIleSerIleThrL 457521 : TTTCTTCGTCGTTACAAGACCTGTCTGCAATTTCATCAGAGATTGATCTCCATAACCA : 457578 288 : spGluValAsnAspValPheGlySerSerMetPheSerGlnLeuLeuSerSerSerLe : 306 ! !!: !||| :!!!:!.!!|||||||||||| !|||:!!:!!||||||!!!! ysAspTyrAsnArgIleTyrSerSerSerMetPheValGlnMetIleSerSerThrSe 457579 : AAGATTACAACAGAATCTACAGCTCGAGCATGTTCGTCCAGATGATCTCCAGCACTTC : 457635 307 : uIleIleCysLeuThrGlyPheGlnSerLeuLeuVal : 318 !||||||||||||||||||||||||:!!:!!:!!||| rIleIleCysLeuThrGlyPheGlnAlaValValVal 457636 : GATTATTTGCTTAACTGGTTTCCAAGCTGTCGTGGTA : 457673 vulgar: gi|528747906|gb|AGS43048.1| 267 318 . KQ414618.1 457520 457673 + 140 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 457521 457673 140 + . gene_id 2 ; sequence gi|528747906|gb|AGS43048.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 457521 457673 . + . KQ414618.1 exonerate:protein2genome:local exon 457521 457673 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 457521 457673 140 + . alignment_id 2 ; Query gi|528747906|gb|AGS43048.1| ; Align 457521 268 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887657|gb|AGG17945.1| olfactory receptor 12 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence Model: protein2genome:local Raw score: 245 Query range: 16 -> 225 Target range: 454091 -> 456623 17 : IleHisCysIleArgPheCysGlyIleTrpLysPheAspSerSerAlaSerThrTyrH : 36 :!: !! !|||!:! !!|||:!:||||||...:::|||... !|||:!!!:! ValPheSerTyrArgTyrSerGlyLeuTrpLysIleGluSerLysHisSerSerPheM 454092 : GTGTTTTCATACAGATACAGTGGCCTctggaaaattgaatcgaaacACTCGTCGTTTA : 454149 37 : isLysLeuMetAsnLeuPheGlyLysIlePheAsnProThrLeuLeuIlePheHisPh : 55 ! !:!! !!!!! !|||:!!!::! ! !! !:!!:!!! ! ! ! etThrIleAlaTyrPheAlaTyrLysLeuTrpIleLeuIleMetMetAsnValPheAl 454150 : TGACAATCGCTTACTTCGCGTACAAACTATGGATACTCATAATGATGAACGTATTCGC : 454206 56 : eLeuThrLeuPheAlaAspIleValAlaAsnTyrAsnAspLeuIleIleIleAlaAsp : 74 !:!!|||:!!|||||||||||| !! !||| :!!:!!||| ||||||::!||| aValThrIlePheAlaAspIleTyrGluAsnMetAspAsnLeuSerIleIleSerAsp 454207 : CGTCACTATATTCGCAGACATCTACGAGAACATGGACAACCTATCGATCATTAGCGAC : 454263 75 : AspGlyCysPheLeuAlaGlySerPheThrValCysPheLysAlaTyrGluPheHisL : 94 |||||||||||||||||||||! !.!!..!||| !||||||||| .!.!:!!!.: AspGlyCysPheLeuAlaGlyIleLeuValValIlePheLysAlaMetAsnTyrGlnI 454264 : GACGGTTGTTTCCTCGCTGGAATACTCGTCGTGATTTTTAAGGCTATGAATTACCAAA : 454323 95 : euLeuAsnAsnIleTyrMetLysIleIleAsnAspValHisAspSerValAspValLe : 113 !!! !...... :::|||::::!!:!!|||:!! :!!!!!!.!|||! !|| leHisGlnLysSerIleIleLysLeuLeuAspAspIleLeuAsnCysAlaAspAspLe 454324 : TTCATCagaaaagtataattaaattgCTCGACGACATATTGAACTGTGCTGATGATCT : 454380 114 : uGlnLysSerCys{A} >>>> Target Intron 1 >>>> {sp}LeuGlyVal : 121 | !:!! !! !{:} 1905 bp {!!} !! !..! uCysArgPheSer{A}++ ++{sn}ThrGluThr 454381 : CTGCAGATTTTCC{A}gt.........................ag{AT}ACCGAAACG : 456309 122 : <->LeuThrIleIleLysGlnTyrIlePhePheGluThrLeuAspPhePheLeuLeuI : 140 ! !||||||!!.!:!||| |||... :::! !|||!:! !!!!! AsnLysTyrIleIleAsnArgTyrTyrLysPheAsnLysValValPheTyrGlyPheS 456310 : AATAAATACATCATCAACCGATactataaatttaacaaagtaGTTTTCTACGGGTTCA : 456369 141 : leTyrValValThrValLeuGlyValGlyLeuIleValLeuLeuProLeuThrArgGl : 159 ! :!!! ! !|||||||||:!!!.!|||:!! !!!!!! !|||||| !:!.. erMetLeuGlyCysValLeuGlyIleAlaLeuLeuPhePheSerProLeu---GlnAs 456370 : GCATGTTAGGATGCGTTTTAGGAATAGCTCTGCTATTTTTCTCGCCTCTG---CAGAA : 456423 160 : yGlyLeuProValArgAlaIlePheProPheAspValThrLysProLeuMetHisLys : 178 !|||||||||:!!||||||! !:!||||||:!!..!|||! ! !!! !.!.!..:!! nGlyLeuProIleArgAlaLysTyrProPheAsnThrThrIleSerProPheArgGlu 456424 : CGGTTTGCCCATCAGAGCAAAGTATCCTTTTAACACCACTATATCTCCTTTCCGAGAG : 456480 179 : IleAlaPhePheIleGlnAlaTyrAsnIleSerPheGlyLeuValThrIleValAlaL : 198 |||!.!!!. !:!!:!!.!!!:! !:!!||| !||||||:!!!:!|||||||||: IleGlyLeuAlaValGluThrPheAlaValSerGlyGlyLeuLeuSerIleValAlaM 456481 : ATTGGTTTGGCTGTCGAAACTTTTGCTGTTTCTGGTGGTTTATTGAGCATAGTTGCCA : 456540 199 : euGluTyrLeuSerTrpGlyLeuMetArgTrpThrIleValGlnLeuLysValLeuSe : 217 !!!!: !!:!!!!! !:!! !!! !! !! !!.!|||!!! ! :!!|||!: etAspAsnIleThrAlaMetMetCysSerGlnIleThrAlaGlnPheAspMetLeuAs 456541 : TGGACAATATCACTGCAATGATGTGCAGCCAGATCACTGCTCAGTTCGATATGTTGAA : 456597 218 : rSerAsnTyrArgAsnCysAsnSer : 225 ! ! !!:!..!!!.|||!.!||| nValLeuPheGluLysCysThrSer 456598 : CGTACTTTTTGAGAAGTGTACTAGT : 456623 vulgar: gi|452887657|gb|AGG17945.1| 16 225 . KQ414618.1 454091 456623 + 245 M 101 303 S 0 1 5 0 2 I 0 1901 3 0 2 S 1 2 M 3 9 G 0 3 M 35 105 G 1 0 M 68 204 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 454092 456623 245 + . gene_id 1 ; sequence gi|452887657|gb|AGG17945.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 454092 454395 . + . KQ414618.1 exonerate:protein2genome:local exon 454092 454395 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 454396 454397 . + . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 454396 456300 . + . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 456299 456300 . + . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 456301 456623 . + . KQ414618.1 exonerate:protein2genome:local exon 456301 456623 . + . insertions 3 ; deletions 1 KQ414618.1 exonerate:protein2genome:local similarity 454092 456623 245 + . alignment_id 1 ; Query gi|452887657|gb|AGG17945.1| ; Align 454092 17 303 ; Align 456303 119 9 ; Align 456315 122 105 ; Align 456420 158 204 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887657|gb|AGG17945.1| olfactory receptor 12 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 359 -> 428 Target range: 457926 -> 459213 360 : GlnAlaAsnAspLeuThrThrSerGlnTrpMetSerGlyTrpGluAspLysPheAspG : 379 |||::!:::! :!! !! !|||||||||:!:|||||||||.!. !!:!! ! GlnSerSerValIleAspArgSerGlnTrpLeuSerGlyTrpAsnHisGluHisLeuT 457927 : CAGAGTTCGGTGATAGACAGGAGTCAGTGGCTCTCCGGTTGGAATCACGAACATTTGA : 457984 380 : lyGlyIleLysAsnLeuValThrThrSerMetIleArgThrMetGlnProLeuGluVa : 398 !.!!||| !!!.:!! !!||| !|||! !!: !|||! ||| !!:!! !:! hrSerIleValLysIlePheThrLeuSerThrMetPheThrArgGlnSerIleThrLe 457985 : CTAGTATCGTGAAAATCTTCACTCTGTCCACCATGTTCACCAGACAGTCGATTACGTT : 458041 399 : lArgAlaGlyGlyLeuPheIleLeuSerMetGluThrPheLeuSer >>>> Targe : 414 !!:!||||||! !!!!!:!:!!||||||:!!|||||||||:!!:!! 1 uLysAlaGlyValPheTyrValLeuSerLeuGluThrPheIleAla++ 458042 : GAAGGCTGGCGTATTTTATGTACTATCTCTGGAGACTTTTATCGCGgt.......... : 458091 415 : t Intron 1 >>>> IleLeuLysThrSerTyrSerValPheValLeuLeuThrTh : 427 080 bp |||:!!!:!! !|||||||||||||||..!||||||!.!!. ++IleValArgArgSerTyrSerValPheThrLeuLeuAsnAs 458092 : ...............agATCGTAAGGAGGTCCTACTCAGTCTTCACTCTATTGAACAA : 459208 428 : rVal : 428 !:!! nMet 459209 : CATG : 459213 vulgar: gi|452887657|gb|AGG17945.1| 359 428 . KQ414618.1 457926 459213 + 127 M 54 162 5 0 2 I 0 1076 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 457927 459213 127 + . gene_id 2 ; sequence gi|452887657|gb|AGG17945.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 457927 458088 . + . KQ414618.1 exonerate:protein2genome:local exon 457927 458088 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 458089 458090 . + . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 458089 459168 . + . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 459167 459168 . + . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 459169 459213 . + . KQ414618.1 exonerate:protein2genome:local exon 459169 459213 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 457927 459213 127 + . alignment_id 2 ; Query gi|452887657|gb|AGG17945.1| ; Align 457927 360 162 ; Align 459169 414 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747908|gb|AGS43049.1| odorant receptor Or1d, partial [Cephus cinctus] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 240 Query range: 2 -> 139 Target range: 1062772 -> 1062361 3 : PheLysValIleLeuSerGluLeuMetAsnPheLeuAsnThrAlaSerProPheGl : 21 .!!:!!|||:!::!!.!!:!!:!!! ! |||:!!!!...!|||!:! ! !|| IleGlnValLeuValGlyLysValLysAlaPheValLysValAlaAsnLysAsnGl 1062772 : ATTCAGGTGTTGGTAGGAAAAGTAAAGGCGTTTGTAAAAGTGGCAAACAAGAACGA : 1062718 22 : uLysAlaLysLeuGlnLysHisValAspGlnCysThrProPheTyrLeuPheIleL : 40 |! !! !:!!||| !:!!||||||!:!! !! !! !|||!:! ! ||| uIleLysIleIleGlnGlyTyrValAspArgTyrLysArgPhePheGlyThrIleA 1062717 : GATTAAGATAATACAAGGATACGTGGATCGATATAAACGATTTTTCGGAACAATAG : 1062661 41 : euIleLeuPheSerLeuThrAlaValAlaPheSerCysGlyProIleValMetAsp : 58 !!!: !!:! !:!!|||!.!:!!.!!||||||! !.!|||:!: !! ! laMetGlyTyrValMetThrGlyIleThrPheSerLeuAlaProLeuPheSerVal 1062660 : CAATGGGATACGTAATGACTGGAATCACGTTCAGTTTGGCGCCTCTGTTTTCCGTA : 1062607 59 : ArgProPheProAlaGluAlaTrpTyrProPheSerThrAsnProLeuProIleSe : 77 !:! !!!.||||||!!:!.!||| !|||||||||! !!!.|||||| !:!!! GlnGluLeuProAlaAspGlyTrpIleProPheSerIleLysProLeuGlyValTy 1062606 : CAAGAATTGCCAGCAGACGGATGGATCCCGTTTTCCATTAAACCACTGGGAGTATA : 1062550 78 : rCysSerIleTyrValLeuGlnIleMetValIleAlaGlnAlaAlaMetCysIleH : 96 !||| !:!!||| !!:!!|||:!! !||| !|||.!!|||.!.|||||| rCysLeuValTyrPheValGlnValTyrCysIleLeuGlnThrAlaPheCysIleS 1062549 : TTGCCTCGTATACTTTGTGCAGGTTTACTGCATTCTCCAAACAGCGTTCTGCATTA : 1062493 97 : isMetAspPheMetIleAlaPheLeuLeuTrpTyrAlaValAlaSerPheGluIle : 114 !:!!|||||||||||||||.!!|||:!! ! !:!:!!!.!|||!.!!!.!!:||| erValAspPheMetIleAlaLeuLeuIleSerPheSerAlaAlaLysLeuAspIle 1062492 : GCGTGGATTTCATGATCGCTCTTCTAATCAGCTTCTCCGCGGCTAAATTAGACATA : 1062439 115 : LeuGlyGluLysPheArgArgValGluAsnGluValAspLeuArgAsnCysIleVa : 133 |||||| !|||.!.|||!:!!.!.!...!.!.! !! ||| !!:!|||:!! LeuGlyMetLysLeuArgLysAlaAsnGlyHisAspValLeuValSerCysValLy 1062438 : CTGGGGATGAAACTGCGAAAAGCGAATGGCCACGACGTGCTGGTAAGCTGTGTCAA : 1062382 134 : lGlnHisGlnLysLeuIle : 139 !:!!||||||:!!:!!||| sGluHisGlnGluIleIle 1062381 : AGAACACCAAGAGATAATA : 1062362 vulgar: gi|528747908|gb|AGS43049.1| 2 139 . KQ414618.1 1062772 1062361 - 240 M 137 411 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1062362 1062772 240 - . gene_id 1 ; sequence gi|528747908|gb|AGS43049.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1062362 1062772 . - . KQ414618.1 exonerate:protein2genome:local exon 1062362 1062772 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1062362 1062772 240 - . alignment_id 1 ; Query gi|528747908|gb|AGS43049.1| ; Align 1062773 3 411 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747908|gb|AGS43049.1| odorant receptor Or1d, partial [Cephus cinctus] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 140 -> 257 Target range: 1026092 -> 1023891 141 : PheValArgGluIleAsnArgValPheTyrValMetIleLeuLysThrProLeuSe : 159 !:!|||||||||:!!||| !!||| ! !:!: :!!|||:!! !!:!!:! TyrValArgGluValAsnCysValValAlaProLeuAlaIleLysSerThrIleAl 1026092 : TACGTTCGTGAAGTTAATTGTGTCGTGGCACCTCTTGCGATTAAATCGACAATTGC : 1026038 160 : rMetThrIleSerIleIleCysSerSerValGlnLeuIleHisHisGluProLeuP : 178 !:!!.!!:!:! !!!:||| !|||.!!:!! !||||||||| ... !!! ! aValAlaLeuTyrMetIleValSerGlyLeuValLeuIleHisValArgThrSerS 1026037 : AGTGGCATTGTACATGATTGTTTCTGGTCTTGTGCTTATACACGTACGTACTTCTT : 1025981 179 : roValLeuSerGlnPheIleLeuLeuLeuValValCys{S} >>>> Target I : 191 !! ::: ::::::|||...... ::: {!} 1847 erPheArgAsnIleTyrLeuLeuPhePheAsnIleLys{T}++ 1025980 : CGttcagaaatatttatctattattttttaatattaaa{t}gt............. : 1025939 192 : ntron 1 >>>> {er}IleLysLeuTyrIleThrAlaTrpProAlaAspSerLe : 204 bp { !} ::: ||| ::: || ++{yr}TyrAspIleLeuIleIleGluLysHisSerPheHisLe 1025938 : ............ag{AC}tacgatattttaataattgagaaacattcttttcattt : 1024056 205 : u<->IleHisAlaSerGluAsnIleAlaSerSerValTyrGluSerSerTrpIleG : 222 | .!!.!. !:!!.!.!:!||||||!!!..!:!!|||!!:||||||||||||. uTyrPheGluGlnAlaHisSerIleAlaTrpAspIleTyrAspSerSerTrpIleA 1024055 : atactTTGAACAGGCACACAGTATTGCCTGGGATATTTACGACTCCTCGTGGATTA : 1023999 223 : lyLysSerSerThrPheLeuLysSerLeuAsnIleValIleArgArgSerGlnLys : 240 .! !|||!!!! ! !!! !!..!!!:!! :!!:!!|||!:!|||!!!|||!:! snAlaSerThrLysValArgSerArgIleValLeuIleIleGlnArgCysGlnArg 1023998 : ACGCGTCCACGAAGGTTCGCAGTAGGATCGTGCTAATTATTCAAAGGTGCCAGAGA : 1023945 241 : ProLeuIleIleSerIleThrGlyIleLeuProProLeuSerLeuArgPhe : 257 |||:!!! ||| ! !! !|||.!!!!! !! !!! !||||||!:!||| ProIleThrIleHisAlaIleGlyPhePheThrAlaTrpSerLeuLysPhe 1023944 : CCTATTACGATTCACGCTATTGGATTTTTCACCGCCTGGTCTTTAAAATTC : 1023892 vulgar: gi|528747908|gb|AGS43049.1| 140 257 . KQ414618.1 1026092 1023891 - 102 M 50 150 S 0 1 5 0 2 I 0 1843 3 0 2 S 1 2 M 13 39 G 0 3 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1023892 1026092 102 - . gene_id 2 ; sequence gi|528747908|gb|AGS43049.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1025942 1026092 . - . KQ414618.1 exonerate:protein2genome:local exon 1025942 1026092 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1025940 1025941 . - . intron_id 1 ; splice_site "gt" KQ414618.1 exonerate:protein2genome:local intron 1024095 1025941 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1024095 1024096 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1023892 1024094 . - . KQ414618.1 exonerate:protein2genome:local exon 1023892 1024094 . - . insertions 3 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1023892 1026092 102 - . alignment_id 2 ; Query gi|528747908|gb|AGS43049.1| ; Align 1026093 141 150 ; Align 1024093 192 39 ; Align 1024051 205 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747908|gb|AGS43049.1| odorant receptor Or1d, partial [Cephus cinctus] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 35 -> 139 Target range: 3155415 -> 3155733 36 : TyrLeuPheIleLeuIleLeuPheSerLeuThrAlaValAlaPheSerCysGlyPr : 54 |||! ! ||||||:!! !! !!!:!!! !.!!:!!:!!|||.!!... ! TyrTyrAlaIleLeuValGluSerThrValMetThrLeuSerPheGlyAlaLeuLe 3155416 : TATTACGCGATTCTGGTCGAATCGACGGTGATGACTTTGTCTTTCGGTGCACTGTT : 3155470 55 : oIleValMetAspArgProPheProAlaGluAlaTrpTyrProPheSerThrAsnP : 73 !! ! ! ...||||||!!.||| !..! !||| |||! !!:! !!.!| uLysProGluSerArgProLeuProTyrArgIleTrpLeuProCysAsnTyrThrP 3155471 : GAAACCAGAATCACGTCCTTTACCGTATCGAATTTGGCTACCTTGCAATTACACCC : 3155527 74 : roLeuProIleSerCysSerIleTyrValLeuGlnIleMetValIleAlaGlnAla : 91 ||||| !! !! !||||||||||||..!|||||| !:!!!.!:!!|||! !::! roLeuIleThrTyrCysSerIleTyrThrLeuGlnCysValAlaLeuAlaLeuSer 3155528 : CGTTAATTACTTACTGTTCGATTTACACTCTCCAATGTGTGGCACTCGCTCTAAGC : 3155581 92 : AlaMetCys<->IleHisMetAspPheMetIleAlaPheLeuLeuTrpTyrAlaVa : 109 |||||| :!! ! ||| !:!!|||..! !||||||! :!!.!! AlaMetMetHisValAlaCysAspSerLeuIleCysGlyLeuLeuLeuHisThrTy 3155582 : GCTATGATGCACGTCGCCTGCGACAGTTTGATCTGCGGCCTGCTGTTACACACTTA : 3155638 110 : lAlaSerPheGluIleLeuGlyGluLysPheArgArgVal<->GluAsnGluValA : 127 !!.!..!.!!|||||||||||| :::.!.!:: ::: ||||||||| rGlyGlnIleGluIleLeuGlyCysArgLeuLysThrIleLysGluAsnGluSerL 3155639 : CGGCCAGATCGAGATCCTCGGTTGTCGTCTGAaaacgataaaagaaaacgagagtA : 3155695 128 : spLeuArgAsnCysIleValGlnHisGlnLysLeuIle : 139 ! ! !!!.! !|||!:::!!.!.!!.|||||| ysThrSerLysLeuCysValArgTyrAsnAsnLeuIle 3155696 : AGACGTCCAAGTTGTGCGTTCGTTACAACAACCTTATC : 3155733 vulgar: gi|528747908|gb|AGS43049.1| 35 139 . KQ414646.1 3155415 3155733 + 109 M 59 177 G 0 3 M 28 84 G 0 3 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155416 3155733 109 + . gene_id 1 ; sequence gi|528747908|gb|AGS43049.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155416 3155733 . + . KQ414646.1 exonerate:protein2genome:local exon 3155416 3155733 . + . insertions 6 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155416 3155733 109 + . alignment_id 1 ; Query gi|528747908|gb|AGS43049.1| ; Align 3155416 36 177 ; Align 3155596 95 84 ; Align 3155683 123 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887649|gb|AGG17941.1| olfactory receptor 8 [Microplitis mediator] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 222 Query range: 22 -> 212 Target range: 3157390 -> 3158064 23 : ThrGlyIleLysSerPheLeuTyrAsnLeuTyrThrLeuPheIleThrSerIleSe : 41 ||| !.!!:!!!!!! !|||||||||:!!||| !:::||| ::: ThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheSerPheLeuLeuLe 3157391 : ACACCGTTCGAAAGGTCTTTGTACAATATCTACGGGGtgttctcctttcttcttct : 3157445 42 : rTyrThrPheLeuLeuSerGlnIleLeuAspLeuIleIleSerThrLysThrValS : 60 !!:!.!!:!!||||||||||||||||||:!! |||!:!..!:!!!:! !. uSerSerLeuValLeuSerGlnIleLeuAspValAlaIleAsnValGluSerGlnA 3157446 : aagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCAACGTGGAGAGCCAGG : 3157502 61 : erAspPheThrAsnAsnIlePheIleValSerAlaIleLeuThrGlyCysLeuLys : 78 .!||||||!:::::|||... :::..!:!!!.!:!:!!! ! !!! !!!||| spAspPheSerAspAsnPheSerValThrAlaValValPheLeuThrTrpPheLys 3157503 : ATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTTCTCACGTGGTTCAAG : 3157556 79 : IlePheArgPheIleArgSerArgAsnThrPheIleAsnIleIleAsnAsnPheLy : 97 :!!! !! !.!.:!!! ! !!|||...!.!|||||| !:!:|||:!!!...!!:! LeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuIleAspThrLeuGl 3157557 : CTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGATCGATACGCTTCA : 3157613 98 : sArgGlyLeuPheLysProAlaAsnAsnAspGluIleIleIleTrpAsnLysTyrA : 116 !!.! !! !|||..!|||!.!:!!!..!!:|||! ! ||| ! |||!:!! nAsnLysProPheSerProValAspThrGluGluAsnGluIleArgAlaLysPheG 3157614 : GAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATTAGAGCGAAATTCG : 3157670 117 : laArgIleThr{Ar} >>>> Target Intron 1 >>>> {g}LeuValThr : 123 !!:!||||||{..} 107 bp {!}! ! !||| luLysIleThr{Gl}++ ++{u}TrpAsnThr 3157671 : AGAAGATCACC{GA}gt.........................ag{A}TGGAACACG : 3157798 124 : IleGlyAlaThrThrSerLeuIleIleGlyLeuIleValMetSerTyrAlaLeuCy : 142 |||||| ! !!:: |||:::|||... !.!! !!!!:! ! !! ! IleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrValArgSerLe 3157799 : ATTGGCTACTGGAGtttactattaatttctacGTTCTTTATATACGTGAGATCGCT : 3157855 143 : sSerPheAsnIleProGlnArgGlnLeuLeuTyrArgAlaTrpLeuProTyrAsnT : 161 !! !.!.:!!.!! !.!.|||:!!|||:!!!:!|||||||||:!!||||||:!!| uLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrAspT 3157856 : TTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACGATT : 3157912 162 : yrSerSerLeuProIleIleTyrTrpLeuSerSerMetGluGlnLeuAlaThrVal : 179 ||||| !! !||| |||!:! |||!!!|||:!:.!.||| ! !.!! ! yrSerProAlaPro---IlePheIleLeuThrSerValHisGlnAlaIleAlaSer 3157913 : ACTCCCCTGCGCCC---ATTTTTATCCTTACCTCCGTCCATCAAGCTATAGCCTCG : 3157963 180 : HisIleLeuAlaGlyIleAsnPheSerPheAspLeuIlePhePheGlyThrMetLe : 198 |||! !..! ! !.! !!!!! ! ||| !:!!!:! !||| !:!!:! ThrIleCysCysThrSerThrValThrValAspThrLeuTyrThrGlyLeuLeuIl 3157964 : ACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTATACACTGGCTTGTTGAT : 3158020 199 : uAsnIleCysAlaGlnIleAsnIleLeuLysLeuArgTyrLys : 212 !||||||! !..!|||.!!.!.||||||:!!! !||| !:! eAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArg 3158021 : TAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGG : 3158064 vulgar: gi|452887649|gb|AGG17941.1| 22 212 . KQ414646.1 3157390 3158064 + 222 M 97 291 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 45 135 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157391 3158064 222 + . gene_id 1 ; sequence gi|452887649|gb|AGG17941.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3157391 3157683 . + . KQ414646.1 exonerate:protein2genome:local exon 3157391 3157683 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3157684 3157685 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3157684 3157790 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3157789 3157790 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3157791 3158064 . + . KQ414646.1 exonerate:protein2genome:local exon 3157791 3158064 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3157391 3158064 222 + . alignment_id 1 ; Query gi|452887649|gb|AGG17941.1| ; Align 3157391 23 291 ; Align 3157792 121 135 ; Align 3157927 167 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887649|gb|AGG17941.1| olfactory receptor 8 [Microplitis mediator] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 214 Query range: 22 -> 212 Target range: 3163918 -> 3164592 23 : ThrGlyIleLysSerPheLeuTyrAsnLeuTyrThrLeuPheIleThrSerIleSe : 41 ||| !.!!:!!!!!! !|||||||||:!!||| !:!!||| ! ! !:!! ThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheTyrLeuLeuLeuLe 3163919 : ACGCCGTTCGAAAGGTCTTTGTACAATATCTACGGGGTGTTCTACTTGCTTCTTCT : 3163973 42 : rTyrThrPheLeuLeuSerGlnIleLeuAspLeuIleIleSerThrLysThrValS : 60 ! !!:!.!! !||||||||||||||||||:!! |||!:!..!:!!!:! !. uSerSerLeuAlaLeuSerGlnIleLeuAspValAlaIleAsnValGluSerGlnA 3163974 : AAGCAGCCTCGCCCTCTCGCAAATATTAGACGTAGCGATCAACGTGGAGAGCCAGG : 3164030 61 : erAspPheThrAsnAsnIlePheIleValSerAlaIleLeuThrGlyCysLeuLys : 78 .!||||||::::::|||... |||...:!!!.!:!:!!! ! !!! !!!||| spAspPheSerAspAsnPheSerIleThrAlaValValPheLeuThrTrpPheLys 3164031 : ATGACTTCagtgacaatttttctatcaccGCTGTGGTGTTTCTCACGTGGTTCAAG : 3164084 79 : IlePheArgPheIleArgSerArgAsnThrPheIleAsnIleIleAsnAsnPheLy : 97 :!!! !! !.!.:!!! ! !!|||...!.!|||||| !:!:|||:!!!...!!:! LeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuIleAspThrLeuGl 3164085 : CTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGATCGATACGCTTCA : 3164141 98 : sArgGlyLeuPheLysProAlaAsnAsnAspGluIleIleIleTrpAsnLysTyrA : 116 !!.! !! !|||..!|||!.!:!!!..!!:|||! ! ||| ! |||!:!! nAsnLysProPheSerProValAspThrGluGluAsnGluIleArgAlaLysPheG 3164142 : GAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATTAGAGCGAAATTCG : 3164198 117 : laArgIleThr{Ar} >>>> Target Intron 1 >>>> {g}LeuValThr : 123 !!:!||||||{..} 107 bp {!}! ! !||| luLysIleThr{Gl}++ ++{u}TrpAsnThr 3164199 : AGAAGATCACC{GA}gt.........................ag{A}TGGAACACG : 3164326 124 : IleGlyAlaThrThrSerLeuIleIleGlyLeuIleValMetSerTyrAlaLeuCy : 142 |||||| ! !!:!! !|||:!!||| !! !.!! !!!:! ! !! ! IleGlyTyrTrpSerLeuLeuLeuIleCysAlaPheTrpIleTyrValArgSerLe 3164327 : ATTGGCTACTGGAGTTTACTATTAATTTGTGCGTTCTGGATATACGTGAGATCGCT : 3164383 143 : sSerPheAsnIleProGlnArgGlnLeuLeuTyrArgAlaTrpLeuProTyrAsnT : 161 !! ! :!!.!! !...|||:!!|||:!!!:!||||||||||||||||||:!!| uLeuThrAspPheSerSerArgLysLeuMetPheArgAlaTrpLeuProTyrAspT 3164384 : TTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGCATGGTTACCCTACGATT : 3164440 162 : yrSerSerLeuProIleIleTyrTrpLeuSerSerMetGluGlnLeuAlaThrVal : 179 ||||| !! !||| |||!:! |||!!!! !:!:.!.||| ! !.!!!.! yrSerProAlaPro---IlePheIleLeuThrPheValHisGlnAlaIleAlaAla 3164441 : ACTCCCCTGCGCCC---ATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCG : 3164491 180 : HisIleLeuAlaGlyIleAsnPheSerPheAspLeuIlePhePheGlyThrMetLe : 198 |||! !..! ! !:! !!!!! ! |||! !:!!!:! !||| !:!!:! ThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLeuIl 3164492 : ACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTGAT : 3164548 199 : uAsnIleCysAlaGlnIleAsnIleLeuLysLeuArgTyrLys : 212 !||||||! !..!|||.!!.!.||||||:!!! !||| !:! eAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArg 3164549 : TAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGG : 3164592 vulgar: gi|452887649|gb|AGG17941.1| 22 212 . KQ414646.1 3163918 3164592 + 214 M 97 291 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 45 135 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3163919 3164592 214 + . gene_id 2 ; sequence gi|452887649|gb|AGG17941.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3163919 3164211 . + . KQ414646.1 exonerate:protein2genome:local exon 3163919 3164211 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3164212 3164213 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3164212 3164318 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3164317 3164318 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3164319 3164592 . + . KQ414646.1 exonerate:protein2genome:local exon 3164319 3164592 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3163919 3164592 214 + . alignment_id 2 ; Query gi|452887649|gb|AGG17941.1| ; Align 3163919 23 291 ; Align 3164320 121 135 ; Align 3164455 167 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887649|gb|AGG17941.1| olfactory receptor 8 [Microplitis mediator] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 117 -> 212 Target range: 3150026 -> 3150308 118 : IleThrArgLeuValThrIleGlyAlaThrThrSerLeuIleIleGlyLeuIleVa : 136 :!! !|||! !||||||||| ! !|||! ! !:!! !:!! !:!!:!! LeuTyrArgSerValThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCy 3150027 : CTTTACAGGTCGGTGACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTG : 3150081 137 : lMetSerTyrAlaLeuCysSerPheAsnIleProGlnArgGlnLeuLeuTyrArgA : 155 !|||! ! !:!!! !! ! !:!!.!! !:!!|||:!!||| !||||||| sMetIleLeuSerSerLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgA 3150082 : TATGATCCTCTCTTCGTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAG : 3150138 156 : laTrpLeuProTyrAsnTyrSerSerLeuProIleIleTyrTrpLeuSerSerMet : 173 |||||||||||!:!:!!||| |||||||||! ! !|||!:::!!:!!! !:!: laTrpLeuProPheAspTyr---SerLeuProThrTyrTyrTyrIleAlaTyrVal 3150139 : CCTGGCTGCCCTTCGATTAC---TCTCTGCCAACTTACTATTACATCGCGTACGTT : 3150189 174 : GluGlnLeuAlaThrValHisIleLeuAlaGlyIleAsnPheSerPheAspLeuIl : 192 .!.|||:!!!.!.!!:!! ! ! !:!! ! ||| !!:!!! !|||:!!|| HisGlnIleValAlaLeuIleGlyThrSerLeuSerAsnValAlaCysAspValIl 3150190 : CATCAGATCGTCGCGCTGATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGAT : 3150246 193 : ePhePheGlyThrMetLeuAsnIleCysAlaGlnIleAsnIleLeuLysLeuArgT : 211 |.!!! !||| !:!::!!:!! !|||!.!||| .!.|||||||||! !||| eIleCysGlyLeuLeuValHisAlaCysGlyGlnGlnGluIleLeuLysHisArgM 3150247 : CATCTGCGGGTTGCTCGTTCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAA : 3150303 212 : yrLys : 212 ||| etLys 3150304 : TGAAG : 3150308 vulgar: gi|452887649|gb|AGG17941.1| 117 212 . KQ414646.1 3150026 3150308 + 120 M 44 132 G 1 0 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150027 3150308 120 + . gene_id 3 ; sequence gi|452887649|gb|AGG17941.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150027 3150308 . + . KQ414646.1 exonerate:protein2genome:local exon 3150027 3150308 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3150027 3150308 120 + . alignment_id 3 ; Query gi|452887649|gb|AGG17941.1| ; Align 3150027 118 132 ; Align 3150159 163 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887649|gb|AGG17941.1| olfactory receptor 8 [Microplitis mediator] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 0 -> 120 Target range: 3154921 -> 3155284 1 : MetAspValLeuGlnGluAsnPheSerValLeuPheTyrLeuGlyValTrpLysPr : 19 ||| !!:!!||||||:!!.!..!...! !!! ! ! !|||:!!||| !|| MetHisLeuLeuGlnLysGlnLeuGlnPheCysAlaMetCysGlyLeuTrpProPr 3154922 : ATGCATCTACTGCAAAAACAACTGCAATTTTGCGCAATGTGCGGTCTCTGGCCACC : 3154976 20 : oLeuAspCysThrGlyIle<->LysSerPheLeuTyrAsnLeuTyrThrLeuPheI : 37 |! !...! .!! !:!: |||!!!||| !|||::!:!!!:!:!!! !!:!! oProSerSerAlaProLeuPheLysArgPheAlaTyrSerValPheSerTrpTyrT 3154977 : GCCATCATCAGCTCCGCTGTTTAAAAGATTCGCCTACTCTGTATTCTCGTGGTACA : 3155033 38 : leThrSerIleSerTyrThrPheLeuLeuSerGlnIleLeuAspLeuIleIleSer : 55 !! !:!: !|||! ! :!!!!!|||||||||:!!|||||||||:!:!:! hrLeuIleLeuValTyrIleThrValPheSerGlnIleMetAspLeuIleValAsn 3155034 : CGTTAATACTGGTGTACATCACGGTTTTCAGCCAAATCATGGACCTAATCGTGAAC : 3155087 56 : ThrLysThrValSerAspPheThrAsnAsnIlePheIleValSerAlaIleLeuTh : 74 ..!! !||| !..!!!:|||!:!:!!|||.!!!:!|||:!! !||| ! !! ValThrThrGlnAspGluPheSerAspAsnPheTyrIleLeuLeuAlaCysAlaIl 3155088 : GTGACGACTCAAGACGAGTTTAGCGACAATTTTTACATACTTCTGGCGTGTGCGAT : 3155144 75 : rGlyCysLeuLysIlePheArgPheIleArgSerArgAsnThrPheIleAsnIleI : 93 !..!! ! !||| ! !!! ! :!!!.!||||||!!.!.! !! !..!!!:| eSerLeuGlnLysAlaGlnSerValLeuAsnSerArgLysAsnValHisArgMetI 3155145 : ATCCTTGCAGAAAGCACAGAGTGTGTTAAACAGTCGTAAGAATGTCCACCGTATGA : 3155201 94 : leAsnAsnPheLysArgGlyLeuPheLysProAlaAsnAsnAspGluIleIleIle : 111 ||:!! !!!.!!.!!!! !! !||| ! |||! ! !!!.!!:|||||| ||| leAspLeuLeuAsnSerGluProPheHisProGluCysLysGluGluIleGluIle 3155202 : TCGATCTTTTGAACAGCGAACCTTTTCATCCAGAATGTAAGGAGGAAATCGAGATA : 3155255 112 : TrpAsnLysTyrAlaArgIleThrArg : 120 ! !:!!:! !:!!..! !.!!||| ArgSerArgIleSerGluHisAlaArg 3155256 : AGAAGTAGGATCTCCGAGCACGCCAGG : 3155284 vulgar: gi|452887649|gb|AGG17941.1| 0 120 . KQ414646.1 3154921 3155284 + 115 M 25 75 G 0 3 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3154922 3155284 115 + . gene_id 4 ; sequence gi|452887649|gb|AGG17941.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3154922 3155284 . + . KQ414646.1 exonerate:protein2genome:local exon 3154922 3155284 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3154922 3155284 115 + . alignment_id 4 ; Query gi|452887649|gb|AGG17941.1| ; Align 3154922 1 75 ; Align 3155000 26 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887649|gb|AGG17941.1| olfactory receptor 8 [Microplitis mediator] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 144 -> 211 Target range: 3180122 -> 3180320 145 : AsnIleProGlnArgGlnLeuLeuTyrArgAlaTrpLeuProTyrAsnTyrSerSe : 163 |||.!!! !!!. !!::!||| !||||||!.!|||!!!||||||:!!|||!!!!! AsnPheGlnHisGlyArgLeuThrTyrArgGlyTrpPheProTyrAspTyrThrTh 3180123 : AACTTTCAACACGGCAGACTAACCTACAGAGGCTGGTTCCCTTACGATTACACGAC : 3180177 164 : rLeuProIleIleTyrTrpLeuSerSerMetGluGlnLeuAlaThrValHisIleL : 182 ! !!:!!:!!!:! |||!!!! ! !|||||| ! !|||! !:!!! r---AlaValLeuPheProLeuThrTyrAlaLeuGlnLeuLeuCysValLeuValT 3180178 : C---GCCGTACTTTTTCCATTGACATACGCTCTGCAGCTATTATGCGTGCTCGTAT : 3180231 183 : euAlaGlyIleAsnPheSerPheAspLeuIlePhePheGlyThrMetLeuAsnIle : 200 !:!! !!|||:!! !!||| ! |||:!!:!!||||||||| !:!!:!!.!.:!: yrSerTrpIleHisValSerValAspIleLeuPhePheGlyLeuLeuMetGlnLeu 3180232 : ATTCCTGGATCCACGTTTCAGTGGATATTCTCTTCTTCGGACTGTTGATGCAACTG : 3180285 201 : CysAlaGlnIleAsnIleLeuLysLeuArgTyr : 211 |||..!|||.!!:!:|||||| |||::: CysCysGlnPheAspIleLeuPheSerArgPhe 3180286 : TGCTGTCAATTCGAcattctcttctctcgtttc : 3180320 vulgar: gi|452887649|gb|AGG17941.1| 144 211 . KQ414646.1 3180122 3180320 + 113 M 19 57 G 1 0 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180123 3180320 113 + . gene_id 5 ; sequence gi|452887649|gb|AGG17941.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180123 3180320 . + . KQ414646.1 exonerate:protein2genome:local exon 3180123 3180320 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3180123 3180320 113 + . alignment_id 5 ; Query gi|452887649|gb|AGG17941.1| ; Align 3180123 145 57 ; Align 3180180 165 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887649|gb|AGG17941.1| olfactory receptor 8 [Microplitis mediator] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 26 -> 108 Target range: 3159701 -> 3159947 27 : SerPheLeuTyrAsnLeuTyrThrLeuPheIleThrSerIleSerTyrThrPheLe : 45 !.!.!!|||||||||:!!:!!|||:!! !:!!..! !:!! ! !||||||!! LysLeuLeuTyrAsnValHisThrValThrValValValValLeuSerThrPhePh 3159702 : AAGCTTCTCTATAACGTACACACGGTTACTGTAGTGGTAGTTCTTAGCACGTTTTT : 3159756 46 : uLeuSerGlnIleLeuAspLeuIleIleSerThrLysThrValSerAspPheThrA : 64 !:!!:!!||||||||||||:::|||...:::...:!!!.! !..!!!:|||!:!: eValAlaGlnIleLeuAspIleIlePheAsnValGluAsnGlnAspGluPheSerA 3159757 : CGTCGCCCAGATATTggacattattttcaacgtgGAGAATCAAGACGAGTTTAGCG : 3159813 65 : snAsnIlePheIleValSerAlaIleLeuThrGlyCysLeuLysIlePheArgPhe : 82 !!|||.!!! !|||..!!!!..!:!::!!!.!.!! ! !|||:!:!:!!!!!!. spAsnPheCysIleThrCysCysValMetAsnSerLeuGlyLysLeuTyrSerLeu 3159814 : ACAATTTCTGCATAACGTGCTGCGTGATGAACAGCCTTGGAAAGTTGTACAGCTTG : 3159867 83 : IleArgSerArgAsnThrPheIleAsnIleIleAsnAsnPheLysArgGlyLeuPh : 101 :!:! !.!!|||.!.! !.!! !|||:!!|||:!!:::.!.:!!!!!! !! !.! LeuIleGlyArgGluMetIleGlnAsnLeuIleAspSerLeuGlnSerAspProLe 3159868 : CTGATAGGACGAGAAATGATCCAAAATTTAATAGACTCGCTACAAAGTGACCCTCT : 3159924 102 : eLysProAlaAsnAsnAspGlu : 108 !!:!||| !:!!.!.! ||| uArgProLeuAspGluValGlu 3159925 : TAGGCCGTTGGACGAAGTGGAG : 3159947 vulgar: gi|452887649|gb|AGG17941.1| 26 108 . KQ414646.1 3159701 3159947 + 109 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3159702 3159947 109 + . gene_id 6 ; sequence gi|452887649|gb|AGG17941.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3159702 3159947 . + . KQ414646.1 exonerate:protein2genome:local exon 3159702 3159947 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3159702 3159947 109 + . alignment_id 6 ; Query gi|452887649|gb|AGG17941.1| ; Align 3159702 27 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887649|gb|AGG17941.1| olfactory receptor 8 [Microplitis mediator] Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 218 Query range: 22 -> 212 Target range: 1947313 -> 1946639 23 : ThrGlyIleLysSerPheLeuTyrAsnLeuTyrThrLeuPheIleThrSerIleSe : 41 ||| !.!!:!!!!!! !|||||||||:!!||| !:::||| ::: ThrProPheGluArgSerLeuTyrAsnIleTyrGlyValPheSerPheLeuLeuLe 1947313 : ACACCGTTCGAAAGGTCTTTGTACAATATCTACGGGGtgttctcctttcttcttct : 1947259 42 : rTyrThrPheLeuLeuSerGlnIleLeuAspLeuIleIleSerThrLysThrValS : 60 !!:!.!!:!!||||||||||||||||||:!! |||!:!..!:!!!:! !. uSerSerLeuValLeuSerGlnIleLeuAspValAlaIleAsnValGluSerGlnA 1947258 : aagCAGCCTCGTCCTCTCGCAAATATTAGACGTAGCGATCAACGTGGAGAGCCAGG : 1947202 61 : erAspPheThrAsnAsnIlePheIleValSerAlaIleLeuThrGlyCysLeuLys : 78 .!||||||!:::::|||... :::..!:!!!.!:!:!!! ! !!! !!!||| spAspPheSerAspAsnPheSerValThrAlaValValPheLeuThrTrpPheLys 1947201 : ATGACTTCAgtgacaatttttctgtcaCCGCTGTGGTGTTTCTCACGTGGTTCAAG : 1947148 79 : IlePheArgPheIleArgSerArgAsnThrPheIleAsnIleIleAsnAsnPheLy : 97 :!!! !! !.!.:!!! ! !!|||...!.!|||||| !:!:|||:!!!...!!:! LeuSerIleLeuLeuIleArgArgGlyAsnPheIlePheLeuIleAspThrLeuGl 1947147 : CTTTCCATCCTACTCATACGACGTGGAAACTTTATATTTCTGATCGATACGCTTCA : 1947091 98 : sArgGlyLeuPheLysProAlaAsnAsnAspGluIleIleIleTrpAsnLysTyrA : 116 !!.! !! !|||..!|||!.!:!!!..!!:|||! ! ||| ! |||!:!! nAsnLysProPheSerProValAspThrGluGluAsnGluIleArgAlaLysPheG 1947090 : GAACAAGCCGTTTTCACCTGTGGACACGGAAGAGAACGAGATTAGAGCGAAATTCG : 1947034 117 : laArgIleThr{Ar} >>>> Target Intron 1 >>>> {g}LeuValThr : 123 !!:!||||||{..} 107 bp {!}! ! !||| luLysIleThr{Gl}++ ++{u}TrpAsnThr 1947033 : AGAAGATCACC{GA}gt.........................ag{A}TGGAACACG : 1946906 124 : IleGlyAlaThrThrSerLeuIleIleGlyLeuIleValMetSerTyrAlaLeuCy : 142 |||||| ! !!:: |||:::|||... !.!! !!!!:! ! !! ! IleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIleTyrValArgSerLe 1946905 : ATTGGCTACTGGAGtttactattaatttctacGTTCTTTATATACGTGAGATCGCT : 1946849 143 : sSerPheAsnIleProGlnArgGlnLeuLeuTyrArgAlaTrpLeuProTyrAsnT : 161 !! !.!.:!!.!! !.!.|||:!!|||:!!!:!|||||||||:!!||||||:!!| uLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaTrpIleProTyrAspT 1946848 : TTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCATGGATACCCTACGATT : 1946792 162 : yrSerSerLeuProIleIleTyrTrpLeuSerSerMetGluGlnLeuAlaThrVal : 179 ||||| !! !||| |||!:! |||!!!! !:!:.!.||| ! !.!!!.! yrSerProAlaPro---IlePheIleLeuThrPheValHisGlnAlaIleAlaAla 1946791 : ACTCCCCTGCGCCC---ATTTTTATCCTTACCTTCGTCCATCAAGCTATAGCCGCG : 1946741 180 : HisIleLeuAlaGlyIleAsnPheSerPheAspLeuIlePhePheGlyThrMetLe : 198 |||! !..! ! !:! !!!!! ! |||! !:!!!:! !||| !:!!:! ThrIleCysCysThrSerSerValThrValAspSerLeuTyrThrGlyLeuLeuIl 1946740 : ACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATACACTGGCTTGTTGAT : 1946684 199 : uAsnIleCysAlaGlnIleAsnIleLeuLysLeuArgTyrLys : 212 !||||||! !..!|||.!!.!.||||||:!!! !||| !:! eAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuArg 1946683 : TAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAAGG : 1946640 vulgar: gi|452887649|gb|AGG17941.1| 22 212 . KQ414661.1 1947313 1946639 - 218 M 97 291 S 0 2 5 0 2 I 0 103 3 0 2 S 1 1 M 45 135 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946640 1947313 218 - . gene_id 1 ; sequence gi|452887649|gb|AGG17941.1| ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1947021 1947313 . - . KQ414661.1 exonerate:protein2genome:local exon 1947021 1947313 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1947019 1947020 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1946914 1947020 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1946914 1946915 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1946640 1946913 . - . KQ414661.1 exonerate:protein2genome:local exon 1946640 1946913 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946640 1947313 218 - . alignment_id 1 ; Query gi|452887649|gb|AGG17941.1| ; Align 1947314 23 291 ; Align 1946913 121 135 ; Align 1946778 167 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887647|gb|AGG17940.1| olfactory receptor 7 [Microplitis mediator] Target: KQ414667.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold102, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 354 -> 393 Target range: 801731 -> 801463 355 : LeuMetThrMetArgSerGlnThrProCysLysLeuThrAlaGlyLysIleMetGluL : 374 :!!|||! !|||||||||::!! !|||||||||:!!||||||!.!|||.!! ...: IleMetMetMetArgSerArgIleProCysLysIleThrAlaAlaLysPheTyrSerM 801731 : ATCATGATGATGCGCTCGAGGATACCATGCAAGATAACCGCCGCTAAATTCTACAGCA : 801674 375 : euSerIleGluAsnPheGlyMet >>>> Target Intron 1 >>>> MetMet : 383 !!|||:!:|||!:!|||..!! ! 151 bp :!::!: etSerLeuGluSerPheSerLys++ ++ValLeu 801673 : TGTCCTTGGAGAGCTTCTCGAAGgt.........................agGTACTC : 801496 384 : LysThrSerGlySerTyrPheThrMetLeu : 393 !..|||||| !||||||||||||:!:||| SerThrSerPheSerTyrPheThrValLeu 801495 : AGCACGTCTTTCTCCTACTTCACGGTCCTC : 801464 vulgar: gi|452887647|gb|AGG17940.1| 354 393 . KQ414667.1 801731 801463 - 102 M 27 81 5 0 2 I 0 147 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414667.1 exonerate:protein2genome:local gene 801464 801731 102 - . gene_id 1 ; sequence gi|452887647|gb|AGG17940.1| ; gene_orientation + KQ414667.1 exonerate:protein2genome:local cds 801651 801731 . - . KQ414667.1 exonerate:protein2genome:local exon 801651 801731 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 801649 801650 . - . intron_id 1 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801500 801650 . - . intron_id 1 KQ414667.1 exonerate:protein2genome:local splice3 801500 801501 . - . intron_id 0 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801464 801499 . - . KQ414667.1 exonerate:protein2genome:local exon 801464 801499 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local similarity 801464 801731 102 - . alignment_id 1 ; Query gi|452887647|gb|AGG17940.1| ; Align 801732 355 81 ; Align 801500 382 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747910|gb|AGS43050.1| odorant receptor Or2a [Cephus cinctus] Target: KQ414667.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold102, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 352 -> 405 Target range: 801758 -> 801448 353 : GlyArgAlaLeuArgGlnGlyMetThrIleMetValMetArgSerTyrLysProCysS : 372 |||!!! !!!! !|||.!!:!: !||||||:!!||||||||| ! !||||||! GlySerArgPheSerGlnSerLeuGlnIleMetMetMetArgSerArgIleProCysL 801758 : GGTAGTCGTTTCTCTCAGAGTCTTCAGATCATGATGATGCGCTCGAGGATACCATGCA : 801701 373 : erLeuThrValGlyLysPheCysProMetThrLeuGluValPheThrSer >>>> T : 389 .!:!!|||!.!!.!||||||! ! !|||:!!|||||| !|||:!!!.! ysIleThrAlaAlaLysPheTyrSerMetSerLeuGluSerPheSerLys++ 801700 : AGATAACCGCCGCTAAATTCTACAGCATGTCCTTGGAGAGCTTCTCGAAGgt...... : 801648 390 : arget Intron 1 >>>> IleLeuSerThrSerLeuSerTyrPheThrValLeuA : 401 151 bp :!!||||||||||||!!!||||||||||||||||||! ++ValLeuSerThrSerPheSerTyrPheThrValLeuT 801647 : ...................agGTACTCAGCACGTCTTTCTCCTACTTCACGGTCCTCA : 801463 402 : rgSerMetAsnGlu : 405 !:!!! !!.!!: hrAlaThrLysAsp 801462 : CAGCCACCAAAGAC : 801449 vulgar: gi|528747910|gb|AGS43050.1| 352 405 . KQ414667.1 801758 801448 - 121 M 36 108 5 0 2 I 0 147 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414667.1 exonerate:protein2genome:local gene 801449 801758 121 - . gene_id 1 ; sequence gi|528747910|gb|AGS43050.1| ; gene_orientation + KQ414667.1 exonerate:protein2genome:local cds 801651 801758 . - . KQ414667.1 exonerate:protein2genome:local exon 801651 801758 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 801649 801650 . - . intron_id 1 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801500 801650 . - . intron_id 1 KQ414667.1 exonerate:protein2genome:local splice3 801500 801501 . - . intron_id 0 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801449 801499 . - . KQ414667.1 exonerate:protein2genome:local exon 801449 801499 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local similarity 801449 801758 121 - . alignment_id 1 ; Query gi|528747910|gb|AGS43050.1| ; Align 801759 353 108 ; Align 801500 389 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887647|gb|AGG17940.1| olfactory receptor 7 [Microplitis mediator] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 329 -> 379 Target range: 1387619 -> 1387769 330 : SerSerArgIleProGlnCysIleAlaAsnMetLysTrpTyrAsnIleSerLysAs : 348 |||..!|||||| !!|||! ::: |||... ||||||:!!:!!!.! .. SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 349 : nSerGlnLysLeuThrLeuLeuMetThrMetArgSerGlnThrProCysLysLeuT : 367 ...! ::::::...||||||::: :::|||||||||! ! !! ! !|||| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 368 : hrAlaGlyLysIleMetGluLeuSerIleGluAsnPhe : 379 |||||||||||.!!:!!.!.||||||:!:! ||| hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPhe 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTT : 1387769 vulgar: gi|452887647|gb|AGG17940.1| 329 379 . KQ414716.1 1387619 1387769 + 100 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387769 100 + . gene_id 1 ; sequence gi|452887647|gb|AGG17940.1| ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387769 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387769 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387769 100 + . alignment_id 1 ; Query gi|452887647|gb|AGG17940.1| ; Align 1387620 330 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887653|gb|AGG17943.1| olfactory receptor 9 [Microplitis mediator] Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 97 -> 223 Target range: 891378 -> 891867 98 : IleIleGluLeuLeuValThrIleGlnLysAspTrpSerLysLeuLysSerGluThrG : 117 |||! !!!::!!|||:!! !|||:!! ! :!!!! !:! ! ! !! !!:!:!! !!| IleLysAspValLeuLeuPheIleLysTyrAsnCysAsnTyrTyrMetAsnGlnProG 891379 : ATCAAAGATGTGCTTTTGTTTATCAAATACAATTGTAACTATTATATGAATCAACCAG : 891436 118 : luCysAspIleMetLysLysHisLeuAspGlnGlyLysLysLeuThrLeuPheIleSe : 136 || ! |||:::||| ::: ||||||||||||:::||||||::: !!! luAsnMetIleLeuLysTyrTyrGluArgGlnGlyLysLysIleThrLeuTyrTyrTh 891437 : AAAACatgattttaaaatattacgagAGAcagggaaaaaaaattacactttattACAC : 891493 137 : r{A} >>>> Target Intron 1 >>>> {la}TrpTyrTyrAsnSerMetVal : 144 !{:} 111 bp {!!}!:: !|||! !!!:!::!! r{S}++ ++{er}TyrValTyrMetThrLeuLeu 891494 : T{T}gt.........................ag{CA}TACGTTTATATGACACTTTTA : 891628 145 : ValPheLeuLeuLeuProMetArgProLysValMetThrTrpLeuGlyLeuSerLysG : 164 :!!!:!|||||||||||| ! ! !! !:!!!!: ! :!! !! !|||!!. IleTyrLeuLeuLeuProProMetSerLeuIleIleAspAspValIleSerSerAsnT 891629 : ATCTACTTACTATTACCGCCCATGTCATTAATAATTGATGACGTTATATCCTCAAATT : 891688 165 : lyProAlaAspPheAspPheProTyrProValAsnTyrGlyValAspHisAspLysTy : 183 ! !! !!!: :!!||| !!:! !:!!:!!|||||||||||| ...:::|| yrSerGlnGluArgAsnPheLeuPheGluLeuAspTyrGlyValAspSerGlnGlnTy 891689 : ATTCGCAAGAGCGAAACTTTTTATTCGAACTCGACTATGGCGTGGACAGccaacaata : 891745 184 : rPheTyrAlaIleGluThrHisIleSerPheCysSerThrLeuValIleThrThrIle : 202 ||||||| |||...! !||| ! !.!. ! !!!.!!:!!||| !!.! !||| rPheTyrTyrIleSerIleHisSerTyrMetGlyThrAlaValValAlaAsnLeuIle 891746 : tttttattatatatccATTCATTCGTACATGGGAACTGCTGTAGTTGCCAATTTAATT : 891802 203 : IleAlaAlaAspThrLeuPheIleValPheValGlnHisIleCysGlyValPheLysI : 222 !.!!..!|||||| !!:!!!::!!!:! !|||||| !! !!.!:!!||| !| AlaThrCysAspThrThrTyrMetLeuTyrSerGlnHisAlaTyrAlaLeuPheAlaI 891803 : GCTACTTGCGATACTACCTACATGTTGTACTCTCAACATGCTTATGCTTTGTTTGCAA : 891862 223 : leIle : 223 ||:!! leVal 891863 : TTGTA : 891867 vulgar: gi|452887653|gb|AGG17943.1| 97 223 . KQ414735.1 891378 891867 + 154 M 39 117 S 0 1 5 0 2 I 0 107 3 0 2 S 1 2 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 891379 891867 154 + . gene_id 1 ; sequence gi|452887653|gb|AGG17943.1| ; gene_orientation + KQ414735.1 exonerate:protein2genome:local cds 891379 891496 . + . KQ414735.1 exonerate:protein2genome:local exon 891379 891496 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local splice5 891497 891498 . + . intron_id 1 ; splice_site "GT" KQ414735.1 exonerate:protein2genome:local intron 891497 891607 . + . intron_id 1 KQ414735.1 exonerate:protein2genome:local splice3 891606 891607 . + . intron_id 0 ; splice_site "AG" KQ414735.1 exonerate:protein2genome:local cds 891608 891867 . + . KQ414735.1 exonerate:protein2genome:local exon 891608 891867 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 891379 891867 154 + . alignment_id 1 ; Query gi|452887653|gb|AGG17943.1| ; Align 891379 98 117 ; Align 891610 138 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887653|gb|AGG17943.1| olfactory receptor 9 [Microplitis mediator] Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 343 -> 399 Target range: 892544 -> 892786 344 : IleLysTrpTyrThrLeuSerMetArgSerArgLysLeuLeuThrPheMetIleMetA : 363 :!!! !|||||||||||| !!! !!:!!!!!.!...||| |||:::::: | ValMetTrpTyrThrLeuProLysLysCysHisSerLeuTyrLysPheLeuLeuAlaA 892545 : GTAATGTGGTACACACTTCCTAAGAAGTGTCACagtttatataaatttttgctGGCAA : 892602 364 : rgSerGlnValIleCysSerValSerAlaGlyLysMetPheIleMetSerMetGluTh : 382 |||||..! ! ! !!!.!:!!!!!||| !|||:!: !|||!!!|||||||| rgSerSerLysProSerLysIleThrAlaTyrLysLeuAlaProMetThrMetGluTh 892603 : GAAGTTCGAAACCTAGTAAAATAACAGCTTATAAACTAGCACCCATGACGATGGAGAC : 892659 383 : rPheGlyMet >>>> Target Intron 1 >>>> IleLeuLysThrThrMetS : 392 |||| ! 74 bp |||:!!:!!|||.!!|||| rPheLeuAla++ ++IleIleGlnThrAlaMetS 892660 : GTTTCTCgcggt.........................agattATTCAAACTGCAATGA : 892763 393 : erTyrPheThrIleLeuSerSer : 399 |||||||||||:!!|||! !||| erTyrPheThrValLeuLeuSer 892764 : GTTATTTTACTGTACTATTATCA : 892786 vulgar: gi|452887653|gb|AGG17943.1| 343 399 . KQ414735.1 892544 892786 + 100 M 42 126 5 0 2 I 0 70 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 892545 892786 100 + . gene_id 2 ; sequence gi|452887653|gb|AGG17943.1| ; gene_orientation + KQ414735.1 exonerate:protein2genome:local cds 892545 892670 . + . KQ414735.1 exonerate:protein2genome:local exon 892545 892670 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local splice5 892671 892672 . + . intron_id 1 ; splice_site "gt" KQ414735.1 exonerate:protein2genome:local intron 892671 892744 . + . intron_id 1 KQ414735.1 exonerate:protein2genome:local splice3 892743 892744 . + . intron_id 0 ; splice_site "ag" KQ414735.1 exonerate:protein2genome:local cds 892745 892786 . + . KQ414735.1 exonerate:protein2genome:local exon 892745 892786 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 892545 892786 100 + . alignment_id 2 ; Query gi|452887653|gb|AGG17943.1| ; Align 892545 344 126 ; Align 892745 386 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887647|gb|AGG17940.1| olfactory receptor 7 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 141 Query range: 129 -> 216 Target range: 18060 -> 17802 130 : AlaTyrThrThrThrAlaIlePheLeuSerGluProIleLeuProArgIleIleAsnTyr : 149 ||||||! ! !:!! !:!:|||:!!..!! !||| ! ! !!|||:!::!:|||! AlaTyrIleCysSerPheLeuPheIleGlnValProTrpSerThrArgLeuValAsnSer 18060 : GCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCG : 18003 150 : PheSerLysSerAsnGluSerValProLeuLysPheAlaLeuProLeuGluTyrIleIle : 169 !:!!.!! !..!||| !!!! ! !|||:!!|||!.!:!!||| ! ! |||.!!:!! TyrLysThrGlnAsnIleThrProSerLeuGlnPheValIleProGlyTyrTyrPheVal 18002 : TACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTC : 17943 170 : PheGluLysGluAsnHisTyrTrpLeuMetLeuAlaIleThrAsnMetPheAlaIleAsn : 189 !||| !||| !!:!!|||!:::!!!!:||| ! !||| !! .!! !||| AspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIleLeuIle--- 17942 : GACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATTTTGATT--- : 17883 190 : MetIleIleValThrIleSerCysAspIleMetPheIleThrPheValGlnHisValCys : 209 :!::!::!:||| ! !:!!||||||! !! !:!!!:..!.!.|||||||||..!||| ValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCys 17882 : GTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGC : 17826 210 : GlyLeuPheAlaValValGly : 216 |||||||||||||||!.!||| GlyLeuPheAlaValAlaGly 17825 : GGACTGTTCGCCGTGGCCGGG : 17803 vulgar: gi|452887647|gb|AGG17940.1| 129 216 . KQ414772.1 18060 17802 - 141 M 59 177 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17803 18060 141 - . gene_id 1 ; sequence gi|452887647|gb|AGG17940.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17803 18060 . - . KQ414772.1 exonerate:protein2genome:local exon 17803 18060 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 17803 18060 141 - . alignment_id 1 ; Query gi|452887647|gb|AGG17940.1| ; Align 18061 130 177 ; Align 17884 190 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887647|gb|AGG17940.1| olfactory receptor 7 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 138 Query range: 78 -> 216 Target range: 29766 -> 29355 79 : TyrMetAsnSerIleTyrAsnAlaGluLeuMetValThrLeuPheGluArgMetLysLys : 98 !:!|||.!.!.! ! !!..:!!..!:!!:!:..! |||::: ::: PheMetGlnLysSerIleThrSerArgIleValThrArgLeuTyr***LysCysLeuIle 29766 : TTTATGCAGAAGTCAATTACATCGCGAATCGTTACACGgttatattgaaaatgtttaatc : 29709 99 : AspTrpLysLeuLeuSerSerAlaLysGluLysArgIleLeuGluTyrHisAlaAsnIle : 118 |||::: |||||| !.!|||||| ! ! !! ! ! ! ! !:!: AspPheLeuLeuLeuLeuLysAlaLysThrValThrSerSerIleAlaIleIlePheVal 29708 : gactttcttcttctgttaAAGGCTAAAACTGTTACTTCATCAATCGCCATTATCTTCGTt : 29649 119 : GlyArgLeuIleSerThrGlyTyrAlaGlyPheAlaTyrThrThrThrAlaIlePheLeu : 138 ......|||::: ::!.!!!.! !!.! ! ! ! !!.!|||||| ! CysLeuPhePheSerSerArgPheThrAlaAsnGlyIlePheCysTyrValIlePheThr 29648 : tgtctatttttttcttcacgttTCACAGCAAATGGAATCTTCTGCTACGTTATATTCACC : 29589 139 : SerGluProIleLeuProArgIleIleAsnTyrPheSerLysSerAsnGluSerValPro : 158 |||! ! !!||| !||||||:!!:!!:!! !.!!||| !!.!||||||||| ! ! SerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGly 29588 : TCAGTGGCGATAACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGA : 29529 159 : LeuLysPheAlaLeuProLeuGluTyrIleIlePheGluLysGluAsnHisTyrTrpLeu : 178 :!! ||| !! !||| ! ! ||| !:!! !|||:!!|||:!!:!!|||!::||| ValGlyPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrTyrLeu 29528 : GTGGGCTTCATTTATCCTGCATACTACGGTCTTGACGAAGAGGAGCATTACTACTATCTG : 29469 179 : MetLeuAlaIleThrAsnMetPheAlaIleAsnMetIleIleValThrIleSerCysAsp : 198 ||| ! !!!: !::!:!!.!..!!:!! :!!.!!.!!||| !|||||||||||| MetGlyHisMetLeuSerValIleThrVal---ValPhePheValTyrIleSerCysAsp 29468 : ATGGGTCACATGCTTTCCGTGATAACCGTC---GTGTTTTTCGTCTACATCTCCTGTGAC : 29412 199 : IleMetPheIleThrPheValGlnHisValCysGlyLeuPheAlaValValGly : 216 ! !!:!:!!!:!.! !!|||||||||!.!|||||||||!!. !||| !||| ThrIleTyrMetAsnValValGlnHisAlaCysGlyLeuLeuAsnValSerGly 29411 : ACGATCTATATGAATGTCGTGCAACACGCGTGTGGATTATTGAACGTCTCTGGG : 29356 vulgar: gi|452887647|gb|AGG17940.1| 78 216 . KQ414772.1 29766 29355 - 138 M 110 330 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29356 29766 138 - . gene_id 2 ; sequence gi|452887647|gb|AGG17940.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29356 29766 . - . KQ414772.1 exonerate:protein2genome:local exon 29356 29766 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 29356 29766 138 - . alignment_id 2 ; Query gi|452887647|gb|AGG17940.1| ; Align 29767 79 330 ; Align 29437 190 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887647|gb|AGG17940.1| olfactory receptor 7 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 134 -> 216 Target range: 24419 -> 24176 135 : AlaIlePheLeuSerGluProIleLeuProArgIleIleAsnTyrPheSerLysSerAsn : 154 !.!:!!||| !:!!! ! !!||| !||||||:!!:!!:!! !.!!||| !!.!||| ValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 24419 : GTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAAC : 24362 155 : GluSerValProLeuLysPheAlaLeuProLeuGluTyrIleIlePheGluLysGluAsn : 174 |||||| ! !:!! ||| !! !||| !.!.||| !:!! !|||:!!|||:!! GluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHis 24361 : GAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCAT : 24302 175 : HisTyrTrpLeuMetLeuAlaIleThrAsnMetPheAlaIleAsnMetIleIleValThr : 194 :!!|||!::|||||| ! !!!: !::!:!!.!..!!:!! :!!.!!.!!||| ! TyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrVal---ValPhePheValTyr 24301 : TACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTC---GTGTTTTTCGTCTAC : 24245 195 : IleSerCysAspIleMetPheIleThrPheValGlnHisValCysGlyLeuPheAlaVal : 214 ||||||||||||! !!:!:!!!:!.!.!!|||||||||!.!|||||||||!!. !:!! IleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeu 24244 : ATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTC : 24185 215 : ValGly : 216 !||| SerGly 24184 : TCTGGG : 24177 vulgar: gi|452887647|gb|AGG17940.1| 134 216 . KQ414772.1 24419 24176 - 132 M 54 162 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24177 24419 132 - . gene_id 3 ; sequence gi|452887647|gb|AGG17940.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24177 24419 . - . KQ414772.1 exonerate:protein2genome:local exon 24177 24419 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 24177 24419 132 - . alignment_id 3 ; Query gi|452887647|gb|AGG17940.1| ; Align 24420 135 162 ; Align 24258 190 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887647|gb|AGG17940.1| olfactory receptor 7 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 134 -> 216 Target range: 38012 -> 37769 135 : AlaIlePheLeuSerGluProIleLeuProArgIleIleAsnTyrPheSerLysSerAsn : 154 !.!|||||| !|||! ! !!||| !||||||:!!:!!:!! !.!!||| !!.!||| ValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 38012 : GTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAAC : 37955 155 : GluSerValProLeuLysPheAlaLeuProLeuGluTyrIleIlePheGluLysGluAsn : 174 |||||| ! !:!! ! ||| !! !||| ! ! ||| !:!! !|||:!!|||:!! GluSerArgGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHis 37954 : GAATCGCGTGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAGGAACAT : 37895 175 : HisTyrTrpLeuMetLeuAlaIleThrAsnMetPheAlaIleAsnMetIleIleValThr : 194 :!!||| |||||| ! !!!: ! !:!!.!..!!:!! :!!.!!.!!||| ! TyrTyrIleLeuMetGlyHisMetLeuCysValIleThrVal---ValPhePheValTyr 37894 : TATTACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTA---GTGTTTTTCGTGTAC : 37838 195 : IleSerCysAspIleMetPheIleThrPheValGlnHisValCysGlyLeuPheAlaVal : 214 ||||||||||||! !!:!:!!!:!:!.!!|||||||||!.!|||||||||.!. !||| IleSerCysAspThrIleTyrMetSerIleValGlnHisAlaCysGlyLeuLeuAsnVal 37837 : ATCTCCTGTGACACGATCTACATGAGCATCGTTCAACACGCGTGCGGATTACTGAACGTC : 37778 215 : ValGly : 216 !||| SerGly 37777 : TCTGGG : 37770 vulgar: gi|452887647|gb|AGG17940.1| 134 216 . KQ414772.1 38012 37769 - 130 M 54 162 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37770 38012 130 - . gene_id 4 ; sequence gi|452887647|gb|AGG17940.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37770 38012 . - . KQ414772.1 exonerate:protein2genome:local exon 37770 38012 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 37770 38012 130 - . alignment_id 4 ; Query gi|452887647|gb|AGG17940.1| ; Align 38013 135 162 ; Align 37851 190 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887647|gb|AGG17940.1| olfactory receptor 7 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 134 -> 216 Target range: 42715 -> 42472 135 : AlaIlePheLeuSerGluProIleLeuProArgIleIleAsnTyrPheSerLysSerAsn : 154 .!!!!:|||:!!|||! !||| !:!!|||!.!:!! !:!! !.!.! !..!!.!||| ThrMetPheIleSerAlaProTyrIleProHisValTyrAspValMetLeuSerLysAsn 42715 : ACAATGTTTATCTCTGCGCCTTATATACCGCATGTATATGATGTTATGTTATCGAAAAAC : 42658 155 : GluSerValProLeuLysPheAlaLeuProLeuGluTyrIleIlePheGluLysGluAsn : 174 |||||| ! !||| ||| !! !||| ! ! ||| !:!! !!::!!!!:!!. GluSerArgLysLeuGlyPheIleTyrProAlaTyrTyrGlyVal---AspGlnAspLys 42657 : GAGTCACGAAAGTTGGGTTTCATTTACCCTGCCTATTATGGCGTT---GATCAAGACAAG : 42601 175 : HisTyrTrpLeuMetLeuAlaIleThrAsnMetPheAlaIleAsnMetIleIleValThr : 194 :!!|||!::! !!!::!!||| !! !!.. !.!:!! :!!.!!.!!..! ! TyrTyrTyrTyrIleIleAlaHisMetThrSerGlyGlyLeuValValPhePheThrPhe 42600 : TATTATTACTATATAATAGCTCACATGACATCTGGGGGCTTAGTGGTGTTTTTCACCTTT : 42541 195 : IleSerCysAspIleMetPheIleThrPheValGlnHisValCysGlyLeuPheAlaVal : 214 ||||||||||||! !!:!:!!!:!.!.!!|||||||||!.!|||||||||!!. !:!! IleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuLeuIle 42540 : ATCTCCTGCGACACGATTTACATGAATATCGTGCAACACGCGTGCGGATTGTTGTTGATT : 42481 215 : ValGly : 216 !||| SerGly 42480 : TCTGGG : 42473 vulgar: gi|452887647|gb|AGG17940.1| 134 216 . KQ414772.1 42715 42472 - 117 M 35 105 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42473 42715 117 - . gene_id 5 ; sequence gi|452887647|gb|AGG17940.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42473 42715 . - . KQ414772.1 exonerate:protein2genome:local exon 42473 42715 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 42473 42715 117 - . alignment_id 5 ; Query gi|452887647|gb|AGG17940.1| ; Align 42716 135 105 ; Align 42611 171 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887647|gb|AGG17940.1| olfactory receptor 7 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 135 -> 216 Target range: 33652 -> 33412 136 : IlePheLeuSerGluProIleLeuProArgIleIleAsnTyrPheSerLysSerAsnGlu : 155 !!:||| !|||! !|||.!!:!!|||!.!.!!|||:!! ! ! !..!!.!|||||| MetPheSerSerAlaProPheIleProHisPheIleAspValAlaLeuSerLysAsnGlu 33652 : ATGTTCAGCTCGGCGCCTTTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAACGAG : 33595 156 : SerValProLeuLysPheAlaLeuProLeuGluTyrIleIlePheGluLysGluAsnHis : 175 ||| ! !|||!..!!. !! !||| ! ! ||| !||| !:!! ::: ::: SerArgLysLeuSerLeuMetTyrProAlaTyrTyrGlyIleAspGlnAspLysTyrTyr 33594 : TCACGAAAATTAAGTTTGATGTACCCTGCCTATTACGGCATTGACCAGGacaagtattat : 33535 176 : TyrTrpLeuMetLeuAlaIleThrAsnMetPheAlaIleAsnMetIleIleValThrIle : 195 |||:::|||||| ! !!!:! !!:! ||| :!!.!!.!!||| !!!: TyrTyrLeuMetAlaHisMetMetSerAlaGlyAlaAla---ValPhePheValPheMet 33534 : tattatctaatgGCTCACATGATGAGCGCAGGGGCAGCG---GTGTTTTTCGTATTTATG : 33478 196 : SerCysAspIleMetPheIleThrPheValGlnHisValCysGlyLeuPheAlaValVal : 215 |||||||||! !!:!:!!!:!.!.!!|||||||||!.!|||||||||!!. !:!! ! SerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuPheIleSer 33477 : TCCTGCGACACGATTTATATGAATATCGTTCAACACGCGTGCGGATTGTTGTTCATTTCC : 33418 216 : Gly : 216 ||| Gly 33417 : GGG : 33413 vulgar: gi|452887647|gb|AGG17940.1| 135 216 . KQ414772.1 33652 33412 - 112 M 53 159 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33413 33652 112 - . gene_id 6 ; sequence gi|452887647|gb|AGG17940.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33413 33652 . - . KQ414772.1 exonerate:protein2genome:local exon 33413 33652 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 33413 33652 112 - . alignment_id 6 ; Query gi|452887647|gb|AGG17940.1| ; Align 33653 136 159 ; Align 33494 190 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887647|gb|AGG17940.1| olfactory receptor 7 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 130 -> 214 Target range: 20574 -> 20325 131 : TyrThrThrThrAlaIlePheLeuSerGluProIleLeuProArgIleIleAsnTyrPhe : 150 !:! ! !!.!!||||||||||||!!!! !|||.!! !|||! !|||:!::!! !!:! PheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAspIleTyr 20574 : TTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTAC : 20517 151 : SerLysSerAsnGluSerValProLeuLysPheAlaLeuProLeuGluTyrIleIlePhe : 170 :!! ! !|||:!!!!! ! !! ! !|||!.!! !||| ! ||| ! .!. AlaProLeuAsnLysThrArgLysArgValPheValTyrPro---AlaTyrTyrTrpMet 20516 : GCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCA---GCCTATTACTGGATG : 20460 171 : GluLysGluAsnHisTyrTrpLeuMetLeuAlaIleThrAsnMetPheAlaIleAsnMet : 190 !!: |||.!.:!!||| !:!!|||:!! ! !! !! .!. ! !.!|||! :!: AspProGluGlnTyrTyrMetIleMetIleIleHisIleMetPheValValIleMetVal 20459 : GATCCTGAGCAATACTACATGATAATGATAATACACATAATGTTCGTGGTGATCATGGTC : 20400 191 : IleIleValThrIleSerCysAspIleMetPheIleThrPheValGlnHisValCysGly : 210 !:!!:!! ! !:!!||||||!!:! !:!:!: ! !|||||||||!.!|||||| CysValIlePheCysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGly 20399 : TGTGTCATATTCTGTGCTTGCGACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGC : 20340 211 : LeuPheAlaVal : 214 |||!!.|||||| LeuLeuAlaVal 20339 : TTATTGGCTGTC : 20326 vulgar: gi|452887647|gb|AGG17940.1| 130 214 . KQ414772.1 20574 20325 - 110 M 34 102 G 1 0 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20574 110 - . gene_id 7 ; sequence gi|452887647|gb|AGG17940.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20574 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20574 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 20326 20574 110 - . alignment_id 7 ; Query gi|452887647|gb|AGG17940.1| ; Align 20575 131 102 ; Align 20473 166 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887653|gb|AGG17943.1| olfactory receptor 9 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 131 -> 222 Target range: 24455 -> 24182 132 : ThrLeuPheIleSerAlaTrpTyrTyrAsnSerMetValValPheLeuLeuLeuProMet : 151 :::|||::!:!!:!!||| ! !!!! |||:!!||| ! !:!! !!!!: SerLeuTyrValAlaAlaAsnGlyIlePheCysTyrValLeuPheThrAlaValAlaIle 24455 : tctctataTGTCGCAGCAAATGGAATCTTCTGCTACGTTCTCTTCACCGCAGTGGCGATT : 24398 152 : ArgProLysValMetThrTrpLeuGlyLeuSerLysGlyProAlaAspPheAspPhePro : 171 ! !|||:::|||:!: ! :!!..!! !!.!!!.! ! !! !! ! ! !||| ! ThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValGlyPheIle 24397 : ACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTGGGCTTCATT : 24338 172 : TyrProValAsnTyrGlyValAspHisAspLysTyrPheTyrAlaIleGluThrHisIle : 191 ||||||!.!|||||||||||||||.!.!!::!!:!!!:!||| !:!: ! !|||!!: TyrProAlaAsnTyrGlyValAspGluGluGluHisTyrTyrTyrLeuMetGlyHisMet 24337 : TATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTACTACTATCTGATGGGTCACATG : 24278 192 : SerPheCysSerThrLeuValIleThrThrIleIleAlaAlaAspThrLeuPheIleVal : 211 !! ! ! !|||:!!|||.!! !..! !|||:!!..!||||||:!!!:!!!: ! LeuSerValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMetAsn 24277 : CTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATCTACATGAAT : 24218 212 : PheValGlnHisIleCysGlyValPheLysIle : 222 .!!||||||||| ||||||:!!!!.!!.:!! IleValGlnHisAlaCysGlyLeuLeuAsnLeu 24217 : ATCGTGCAACACGCGTGTGGATTATTGAACCTC : 24183 vulgar: gi|452887653|gb|AGG17943.1| 131 222 . KQ414772.1 24455 24182 - 135 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24183 24455 135 - . gene_id 1 ; sequence gi|452887653|gb|AGG17943.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24183 24455 . - . KQ414772.1 exonerate:protein2genome:local exon 24183 24455 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 24183 24455 135 - . alignment_id 1 ; Query gi|452887653|gb|AGG17943.1| ; Align 24456 132 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747902|gb|AGS43046.1| odorant receptor Or1a [Cephus cinctus] Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 475 Query range: 0 -> 263 Target range: 57441 -> 58233 1 : MetAspPheSerSerValAsnArgPheAsnGlyLeuValAsnPheValCysGlyAsnLeu : 20 |||||||||..!|||:!!!:!!:!.!.||| !|||:!!||| !! ||||||! ! MetAspPheGlnSerLeuSerGlnLeuAsnMetLeuIleAsnLysTyrSerGlyAsnGln 57442 : ATGGATTTTCAAAGCTTGAGTCAGCTAAATATGCTTATAAACAAGTATTCGGGGAATCAA : 57499 21 : LeuProLeuThrAspAspAlaThrLysPheSerLysAlaGlnLysLeuTyrSerAlaPhe : 40 ||||||:!!|||||| ! !||||||!!. !! ! ! !||| !|||||| !.!. LeuProMetThrAspLysLysThrLysLeuProTyrIleLeuLysSerTyrSerIleMet 57500 : CTACCGATGACGGATAAGAAAACGAAATTACCGTATATTTTAAAGAGCTATTCGATTATG : 57559 41 : ThrTrpIleLeuGluPheThrTyrPheLeuValThrThrPheGlyIlePhePheThrThr : 60 :!!|||:!::!!:!!.!.||||||.!. !||| !..!||||||:!!||| !..! !! SerTrpLeuIleGlnLeuThrTyrLeuThrValCysValPheGlyLeuPheAsnValPro 57560 : TCTTGGCTGATACAGCTAACATACCTGACTGTCTGCGTTTTTGGTCTTTTCAACGTACCC : 57619 61 : AsnGlnArgIlePheGlnAspThrThrValAsnGlnAlaValValIleGluIleLeuIle : 80 !...!.!:! !!!.:!!||| !||||||||| !!.!|||!.!:!!||| !:!!:!: ArgAspLysAlaLeuLysAspGlyThrValAsnIleValValAlaLeuGluGluIleVal 57620 : AGAGATAAAGCATTGAAGGACGGCACGGTAAATATAGTGGTTGCTTTAGAAGAAATTGTG : 57679 81 : LeuGlyPheTyrMetAsnLeuArgArgGlyLeuIleTyrArgLeuIleGlyGlnMetAsn : 100 |||! !.!!|||:!!:!! !|||!:! !|||:!! ||||||||||||:!!:!!||| LeuValIleTyrLeuHisAsnArgLysThrLeuValArgArgLeuIleGlyGluLeuAsn 57680 : CTGGTTATTTATTTGCACAACCGTAAAACTTTGGTACGAAGGTTAATTGGAGAACTGAAT : 57739 101 : SerValLeu<->IleAsnValGluThrLeuLysGluCysValGluLysThrValLysPro : 119 !!|||||| :!!:!! !|||! !|||::!.!. !..! !!.||||||||| !! ArgValLeuAlaValAspAsnGluMetLeuArgAsnValThrIleAsnThrValLysSer 57740 : CGTGTTCTCGCGGTAGATAACGAGATGCTACGAAATGTCACGATTAATACCGTGAAATCC : 57799 120 : LeuGlnArgProLeuLysLeuTyrThrIlePheAlaThrValThrValValLeuPheCys : 139 |||:!!!:!|||||||||:::||||||||| !::!..! !.!!|||:!!|||!:: LeuGluLysProLeuLysIleTyrThrIleAlaSerValAsnAlaValMetLeuTrpThr 57800 : TTAGAGAAAcccttgaaaatttatacgatTGCCAGTGTTAATGCAGTTATGCTTTGGACA : 57859 140 : GlySerProIleTyrLysValPheLysLysAspGlnPheSerTyrAsnAspPheArgIle : 159 !.!! !|||:!! !:!!||||||::!!:!..!:!!|||! !|||!..|||!:!!!!:!: AlaLeuProLeuValGlnValPheArgArgSerGluPheTyrTyrThrAspTyrSerVal 57860 : GCTTTGCCACTCGTCCAAGTATTTCGGAGATCTGAGTTCTATTATACGGATTATAGTGTG : 57919 160 : ProAlaTyrIleProGlyGluProTyrSerThrGlyLeuPheIleAlaGlyIleLeuPhe : 179 |||||| !:!! !! !:!!|||!:!||| !! !:!!|||:!!!.!|||:!!:!!.!! ProAlaAlaLeuSerLysGlnProPheSerTyrAspValPheValGlyGlyValValLeu 57920 : CCAGCTGCTCTATCTAAGCAACCGTTTTCATACGACGTTTTCGTCGGCGGCGTTGTTCTT : 57979 180 : GluThrLeuGlyGlyPheTyrThrIleLeuLysLysAlaSerIleAspIleTyrLeuIle : 199 :!!! !:!!|||||| ! ||||||::::::|||||| ...:!:||||||||| !!!: GlnIleIleGlyGlyValTyrThrValMetLysLysIleGlyValAspIleTyrThrMet 57980 : CAGATTATTGGTGGTGTATACAccgtaatgaaaaaaattggcgTGGATATTTATACGATG : 58039 200 : HisValIleThrLeuLeuThrAlaGlnTyrLysTyrLeuSerLeuGluLeuIleAsnIle : 219 |||:!!||| !|||:!!||||||||||||||||||:!!!!! !:!!:!! ! ! ! HisLeuIleLeuLeuMetThrAlaGlnTyrLysTyrIleArgGlyLysValAlaMetThr 58040 : CATTTGATTCTTTTAATGACGGCGCAGTACAAATATATTAGGGGCAAAGTTGCGATGACA : 58099 220 : IleAsnGlyLysAsnGluAsnIleAsnLysSerAspLeuGluSerLeuAspAsnGluArg : 239 .!!... ! ! |||||| !.!!:!! ! ! !! ! !...! ! !! :!! ! PheArgGlnTyrAsnGluAlaPheAspAspPheGlyAsnSerIleThrGlyLeuLysVal 58100 : TTTCGACAGTATAACGAAGCTTTCGATGATTTCGGCAACAGTATTACTGGACTGAAAGTT : 58159 240 : AsnGluLysIleGluLysThrValGlnIleGluLeuLysLysTrpIleArgHisArgGlu : 259 ::: :!!! :!!|||..!:!!:!! |||:!!!:!..! ! !!.!||| !||| SerCysGluLysGlnLysValIleLysGlnGluMetArgSerAlaSerHisHisTyrGlu 58160 : TCATGCGAGAAGCAAAAAGTGATCAAACAGGAAATGAGATCGGCGTCTCATCATTACGAA : 58219 260 : ValValMetGlu : 263 |||:!!:!::!! ValIleValLys 58220 : GTTATAGTCAAG : 58233 vulgar: gi|528747902|gb|AGS43046.1| 0 263 . KQ414777.1 57441 58233 + 475 M 103 309 G 0 3 M 160 480 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 57442 58233 475 + . gene_id 1 ; sequence gi|528747902|gb|AGS43046.1| ; gene_orientation . KQ414777.1 exonerate:protein2genome:local cds 57442 58233 . + . KQ414777.1 exonerate:protein2genome:local exon 57442 58233 . + . insertions 3 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 57442 58233 475 + . alignment_id 1 ; Query gi|528747902|gb|AGS43046.1| ; Align 57442 1 309 ; Align 57754 104 480 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747902|gb|AGS43046.1| odorant receptor Or1a [Cephus cinctus] Target: KQ414777.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold334, whole genome shotgun sequence Model: protein2genome:local Raw score: 274 Query range: 266 -> 384 Target range: 61705 -> 62259 267 : IleLeuLysAsnLeuLeuValLeuAsnValValTyrValTyrLeuAsnCysIlePheArg : 286 !!:||||||!!.|||||| !! !|||:!!! ! :!!|||:!!||| !:!!|||||| MetLeuLysLysLeuLeuSerProAsnIleGlyIleLeuTyrValAsnAsnValPheArg 61706 : ATGTTGAAGAAATTACTATCTCCAAACATTGGAATACTTTACGTAAACAACGTTTTCCGG : 61763 287 : PheCysPheLeuGlyPheLeuLeuIleSer >>>> Target Intron 1 >>>> S : 297 ||||||||||||.!!!!.:!!:!!|||!!! 80 bp : PheCysPheLeuSerLeuMetIleIleThr++ ++A 61764 : TTCTGCTTTCTAAGTTTAATGATTATAACGgt.........................aga : 61876 298 : erSerGlyAspTyrPheIleGlnAlaLeuValCysSerTyrThrValValCysLeuMetG : 317 ::||||||||| ||| ::: :::::: ! !||||||:!!! !..!|||! !| snSerGlyAspAsnPheGluLysLeuIleIleValMetTyrThrIleGlyAlaLeuThrG 61877 : attccggagataattttgaaaaattgataattgtaATGTATACAATTGGTGCTCTAACGC : 61936 318 : lnValTyrValLeuCysPheCysAlaGlnAsnLeuLeuAspSer >>>> Target In : 332 || !!|||||||||||||||||| !|||.!.|||:!!!!::!! 120 lnPheTyrValLeuCysPheCysIleGlnGluLeuValGluAla++ 61937 : AATTTTATGTATTGTGCTTCTGTATTCAAGAGTTAGTCGAAGCGgt.............. : 61983 333 : tron 2 >>>> SerThrAlaMetThrHisAspAlaPheTyrGluLysTrpTyrAlaTy : 347 bp ||||||:!!:!:.!! !!|||!.! ! :!!|||::!|||||| !! ++SerThrSerValAlaAspAspValValHisGluArgTrpTyrPheCy 61984 : ...........agAGCACATCTGTAGCGGACGATGTAGTACATGAACGATGGTATTTCTG : 62146 348 : rGlyProSerThrLysArgIlePheSerMetIleLeuIleSerAsnLysMetGluCysAr : 367 !! ! ! !..!:!!|||:!!.!!:!!||||||:!!:!!:!!:!!|||||||||||||| sAspValLeuValGlnArgValIleAlaMetIleIleLeuAlaAspLysMetGluCysAr 62147 : TGATGTACTAGTACAACGAGTAATTGCTATGATTATTTTAGCTGATAAAATGGAATGTAG : 62206 368 : gLeuSerMetCysGlyValValAspLeuThrLeuProThrPheMetAlaIle : 384 |||||||! ! ! !! !:!!|||||||||||||||:!!||||||:!!:!: gLeuSerSerPheArgAsnIleAspLeuThrLeuProSerPheMetSerVal 62207 : ACTGTCCAGTTTTCGGAACATAGATTTAACTTTACCATCTTTTATGTCGGTa : 62259 vulgar: gi|528747902|gb|AGS43046.1| 266 384 . KQ414777.1 61705 62259 + 274 M 30 90 5 0 2 I 0 76 3 0 2 M 35 105 5 0 2 I 0 116 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414777.1 exonerate:protein2genome:local gene 61706 62259 274 + . gene_id 2 ; sequence gi|528747902|gb|AGS43046.1| ; gene_orientation + KQ414777.1 exonerate:protein2genome:local cds 61706 61795 . + . KQ414777.1 exonerate:protein2genome:local exon 61706 61795 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local splice5 61796 61797 . + . intron_id 1 ; splice_site "GT" KQ414777.1 exonerate:protein2genome:local intron 61796 61875 . + . intron_id 1 KQ414777.1 exonerate:protein2genome:local splice3 61874 61875 . + . intron_id 0 ; splice_site "ag" KQ414777.1 exonerate:protein2genome:local cds 61876 61980 . + . KQ414777.1 exonerate:protein2genome:local exon 61876 61980 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local splice5 61981 61982 . + . intron_id 2 ; splice_site "GT" KQ414777.1 exonerate:protein2genome:local intron 61981 62100 . + . intron_id 2 KQ414777.1 exonerate:protein2genome:local splice3 62099 62100 . + . intron_id 1 ; splice_site "AG" KQ414777.1 exonerate:protein2genome:local cds 62101 62259 . + . KQ414777.1 exonerate:protein2genome:local exon 62101 62259 . + . insertions 0 ; deletions 0 KQ414777.1 exonerate:protein2genome:local similarity 61706 62259 274 + . alignment_id 2 ; Query gi|528747902|gb|AGS43046.1| ; Align 61706 267 90 ; Align 61876 297 105 ; Align 62101 332 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887659|gb|AGG17946.1| olfactory receptor 13 [Microplitis mediator] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 165 -> 260 Target range: 1344657 -> 1344942 166 : LeuAsnAsnValThrLeuLysPheSerLeuProPheHisPheTyrValPheTyrGl : 184 !!!!:!||| !|||||| !:!..!||||||.!. ! ! !! !.!.||||| PheSerAsnCysThrLeuProTyrGluLeuProMetLysValAsnHisLeuTyrGl 1344658 : TTCAGTAACTGTACTCTTCCTTACGAGCTACCAATGAAAGTGAACCACCTGTACGA : 1344712 185 : uIleAsnSerIleLysThrTyrAlaLeuThrTyrLeuSerHisGlyProPheValP : 203 |:!:!....!:!:::!|||||||||||| !! !:!!! ! !! !||| ! uValThrGluValArgThrTyrAlaLeuPheCysValTyrPheValProThrSerM 1344713 : AGTGACAGAGGTGCGGACGTACGCTTTGTTCTGCGTTTACTTCGTACCGACGAGCA : 1344769 204 : roIleAsnGlyPheGlyThrAlaSerAlaAsnCysPheLeuIleAlaLeuSerPhe : 221 !:!! !.!!|||.!!.!!.!!|||:!! !!.!!|||:!!.!!|||!!!||| etLeuLeuThrIleGlyAlaThrGlyAlaAspSerLeuLeuValThrLeuThrPhe 1344770 : TGTTACTAACAATCGGTGCAACTGGCGCCGACAGTCTTCTAGTCACCTTGACTTTC : 1344823 222 : HisIleSerGlyArgLeuAlaValLeuAlaGluArgIleLysThrLeuLysAspAs : 240 |||:!!!!!.!!!:!!!!:!!:!:|||:::...|||:::|||!.!:!! ! ! !.! HisLeuCysSerGlnPheSerIleLeuSerSerArgValLysAsnIleAspValGl 1344824 : CATCTTTGCAGTCAATTTTCGATcctgtcgagccgtgtaaaaAATATCGACGTCGA : 1344880 241 : nProAspSerTyrLysArgGluLeuLysLeuIleIleAspGluHisIleArgLeuL : 259 .|||.!.!.!||| ! !:!!:!!||| !:!!:!!!!:..!|||! !..!|||| uProGlnLysTyrPheProGlnMetLysAlaLeuValGluArgHisThrGluLeuL 1344881 : GCCGCAAAAGTATTTCCCACAAATGAAAGCACTCGTTGAACGGCACACCGAACTTC : 1344937 260 : euArg : 260 ||||| euArg 1344938 : TACGG : 1344942 vulgar: gi|452887659|gb|AGG17946.1| 165 260 . KQ414782.1 1344657 1344942 + 152 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1344658 1344942 152 + . gene_id 1 ; sequence gi|452887659|gb|AGG17946.1| ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1344658 1344942 . + . KQ414782.1 exonerate:protein2genome:local exon 1344658 1344942 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1344658 1344942 152 + . alignment_id 1 ; Query gi|452887659|gb|AGG17946.1| ; Align 1344658 166 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887659|gb|AGG17946.1| olfactory receptor 13 [Microplitis mediator] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 330 -> 398 Target range: 1345564 -> 1345846 331 : SerAsnLysValCysGluAlaPheTrpAlaCysGlyTrpTyrAspMetProProAs : 349 |||::!:!!:!! :!!|||! !!:: ! !!..!|||||||||:!:||| ! ! SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 350 : pCysIleSerAspValTyrTyrCysIleAlaArgSerGlnLysProLeuAlaLeuT : 368 ! !! !!...:!! !:!||||||||||||||||||||||||! ! !|||| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 369 : hrAlaGlyLysPheLeuThrPheGlyTyrGlyThrIleThrAsp >>>> Targe : 383 ||||||||||||||! !..!|||..!! ! !|||.!! ! ! hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIle++ 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCgt.......... : 1345723 384 : t Intron 1 >>>> ValThrArgThrAlaValGlyTyrLeuSerValLeuArg : 395 78 bp :!!..!!:!.!!:!!:!!!.!|||||||||||||||!:! ++IleValLysAlaSerMetAlaTyrLeuSerValLeuLys 1345724 : ...............agATAGTAAAAGCGTCGATGGCCTATCTTTCCGTTCTGAAA : 1345835 396 : AsnPheLeu : 398 !:!.!!:!! SerIleIle 1345836 : AGCATTATC : 1345846 vulgar: gi|452887659|gb|AGG17946.1| 330 398 . KQ414782.1 1345564 1345846 + 133 M 52 156 5 0 2 I 0 74 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345846 133 + . gene_id 2 ; sequence gi|452887659|gb|AGG17946.1| ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345565 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345846 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345846 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345846 133 + . alignment_id 2 ; Query gi|452887659|gb|AGG17946.1| ; Align 1345565 331 156 ; Align 1345799 383 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887653|gb|AGG17943.1| olfactory receptor 9 [Microplitis mediator] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 131 -> 222 Target range: 29649 -> 29376 132 : ThrLeuPheIleSerAlaTrpTyrTyrAsnSerMetValValPheLeuLeuLeuProMet : 151 :::|||::!:!!:!!||| ! !!!! |||:!!||| ! !:!! !!!!: SerLeuTyrValAlaAlaAsnGlyIlePheCysTyrValLeuPheThrAlaValAlaIle 29649 : tctctataTGTCGCAGCAAATGGAATCTTCTGCTACGTTCTCTTCACCGCAGTGGCGATT : 29592 152 : ArgProLysValMetThrTrpLeuGlyLeuSerLysGlyProAlaAspPheAspPhePro : 171 ! !|||:::|||:!: ! :!!..!! !!.!!!.! ! !! !! ! ! !||| ! ThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValGlyPheIle 29591 : ACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTGGGCTTCATT : 29532 172 : TyrProValAsnTyrGlyValAspHisAspLysTyrPheTyrAlaIleGluThrHisIle : 191 ||||||!.!|||||||||||||||.!.!!::!!:!!!:!||| !:!: ! !|||!!: TyrProAlaAsnTyrGlyValAspGluGluGluHisTyrTyrTyrLeuMetGlyHisMet 29531 : TATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTACTACTATCTGATGGGTCACATG : 29472 192 : SerPheCysSerThrLeuValIleThrThrIleIleAlaAlaAspThrLeuPheIleVal : 211 !! ! ! !|||:!!|||.!! !..! !|||:!!..!||||||:!!!:!!!: ! LeuSerValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMetAsn 29471 : CTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATCTACATGAAT : 29412 212 : PheValGlnHisIleCysGlyValPheLysIle : 222 .!!||||||||| ||||||:!!!!.!!.:!! IleValGlnHisAlaCysGlyLeuLeuAsnLeu 29411 : ATCGTGCAACACGCGTGTGGATTATTGAACCTC : 29377 vulgar: gi|452887653|gb|AGG17943.1| 131 222 . LHQN01017803.1 29649 29376 - 135 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29377 29649 135 - . gene_id 1 ; sequence gi|452887653|gb|AGG17943.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29377 29649 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29377 29649 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 29377 29649 135 - . alignment_id 1 ; Query gi|452887653|gb|AGG17943.1| ; Align 29650 132 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887647|gb|AGG17940.1| olfactory receptor 7 [Microplitis mediator] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 134 -> 216 Target range: 29613 -> 29370 135 : AlaIlePheLeuSerGluProIleLeuProArgIleIleAsnTyrPheSerLysSerAsn : 154 !.!:!!||| !:!!! ! !!||| !||||||:!!:!!:!! !.!!||| !!.!||| ValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 29613 : GTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAAC : 29556 155 : GluSerValProLeuLysPheAlaLeuProLeuGluTyrIleIlePheGluLysGluAsn : 174 |||||| ! !:!! ||| !! !||| !.!.||| !:!! !|||:!!|||:!! GluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHis 29555 : GAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCAT : 29496 175 : HisTyrTrpLeuMetLeuAlaIleThrAsnMetPheAlaIleAsnMetIleIleValThr : 194 :!!|||!::|||||| ! !!!: !::!:!!.!..!!:!! :!!.!!.!!||| ! TyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrVal---ValPhePheValTyr 29495 : TACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTC---GTGTTTTTCGTCTAC : 29439 195 : IleSerCysAspIleMetPheIleThrPheValGlnHisValCysGlyLeuPheAlaVal : 214 ||||||||||||! !!:!:!!!:!.!.!!|||||||||!.!|||||||||!!. !:!! IleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeu 29438 : ATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTC : 29379 215 : ValGly : 216 !||| SerGly 29378 : TCTGGG : 29371 vulgar: gi|452887647|gb|AGG17940.1| 134 216 . LHQN01017803.1 29613 29370 - 132 M 54 162 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29371 29613 132 - . gene_id 1 ; sequence gi|452887647|gb|AGG17940.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29371 29613 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29371 29613 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 29371 29613 132 - . alignment_id 1 ; Query gi|452887647|gb|AGG17940.1| ; Align 29614 135 162 ; Align 29452 190 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887647|gb|AGG17940.1| olfactory receptor 7 [Microplitis mediator] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 129 -> 216 Target range: 18444 -> 18186 130 : AlaTyrThrThrThrAlaIlePheLeuSerGluProIleLeuProArgIleIleAsnTyr : 149 ||||||! ! !:!! !:!:|||:!!..!! !||| ! ! !!|||:!::!:|||! AlaTyrIleCysSerPheLeuPheIleGlnValProTrpSerThrArgLeuValAsnSer 18444 : GCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCG : 18387 150 : PheSerLysSerAsnGluSerValProLeuLysPheAlaLeuProLeuGluTyrIleIle : 169 !:!!.!! !..!||| !!!! ! !||| ! !!!.!:!!||| ! ! |||.!!:!! TyrLysThrGlnAsnIleThrProSerLeuProValValValProGlyTyrTyrPheVal 18386 : TACAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTC : 18327 170 : PheGluLysGluAsnHisTyrTrpLeuMetLeuAlaIleThrAsnMetPheAlaIleAsn : 189 !||| !||| !!:!!|||!:::!!!!:||| ! !||| !! .!! !||| AspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIleLeuIle--- 18326 : GACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATTTTGATT--- : 18267 190 : MetIleIleValThrIleSerCysAspIleMetPheIleThrPheValGlnHisValCys : 209 :!::!::!:||| ! !:!!||||||! !! !:!!!:..!.!.|||||||||..!||| ValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCys 18266 : GTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGC : 18210 210 : GlyLeuPheAlaValValGly : 216 |||||||||||||||!.!||| GlyLeuPheAlaValAlaGly 18209 : GGACTGTTCGCCGTGGCCGGG : 18187 vulgar: gi|452887647|gb|AGG17940.1| 129 216 . LHQN01017803.1 18444 18186 - 131 M 59 177 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18187 18444 131 - . gene_id 2 ; sequence gi|452887647|gb|AGG17940.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18187 18444 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18187 18444 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 18187 18444 131 - . alignment_id 2 ; Query gi|452887647|gb|AGG17940.1| ; Align 18445 130 177 ; Align 18268 190 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887647|gb|AGG17940.1| olfactory receptor 7 [Microplitis mediator] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 133 -> 216 Target range: 26234 -> 25988 134 : ThrAlaIlePheLeuSerGluProIleLeuProArgIleIleAsnTyrPheSerLysSer : 153 .!!|||:!!|||:!!!!! !|||.!!:!! !!! !|||:!::!! !.!!! ! !! ! AlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeu 26234 : GCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTG : 26177 154 : AsnGluSerValProLeuLysPheAlaLeuProLeuGluTyrIleIlePheGluLysGlu : 173 ||||||!!! ! !!! ! !|||!.!! !||| ! ! |||.!!:!! !||| ! :!! AsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLys 26176 : AACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAA : 26117 174 : AsnHisTyrTrpLeuMetLeuAlaIleThrAsnMetPheAlaIleAsnMetIleIleVal : 193 !!|||||| |||!!::!!!.! !! ! !!:!: ! !.!:!!! :!:||| !||| TyrHisTyr---LeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerVal 26116 : TATCATTAC---TTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTT : 26060 194 : ThrIleSerCysAspIleMetPheIleThrPheValGlnHisValCysGlyLeuPheAla : 213 ! !:!!|||||| !! !:!:!: ! !|||||||||!.!|||||||||!!.||| PheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAla 26059 : TTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCC : 26000 214 : ValValGly : 216 :!!!.!||| IleAlaGly 25999 : ATTGCAGGG : 25989 vulgar: gi|452887647|gb|AGG17940.1| 133 216 . LHQN01017803.1 26234 25988 - 108 M 43 129 G 1 0 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26234 108 - . gene_id 3 ; sequence gi|452887647|gb|AGG17940.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26234 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26234 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26234 108 - . alignment_id 3 ; Query gi|452887647|gb|AGG17940.1| ; Align 26235 134 129 ; Align 26106 178 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887659|gb|AGG17946.1| olfactory receptor 13 [Microplitis mediator] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 327 -> 394 Target range: 34375 -> 34659 328 : IleAlaGluSerAsnLysValCysGluAlaPheTrpAlaCysGlyTrpTyrAspMetPro : 347 ||| !:!!|||!..:!!:!! !!.!.:!! !!::! !! ..!||||||:!!:!: !! IlePheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSer 34376 : ATATTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCA : 34433 348 : ProAspCysIleSerAspValTyrTyrCysIleAlaArgSerGlnLysProLeuAlaLeu : 367 ||| !!.! !:!!! !:! !!!: !|||!!! :::||||||..!||| ProProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeu 34434 : CCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTG : 34493 368 : ThrAlaGlyLysPheLeuThrPheGlyTyrGlyThrIleThrAsp >>>> Target I : 383 ||||||||||||||| !||||||..! ! !! !.!!!:! ! 83 ThrAlaGlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34494 : ACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt............. : 34543 384 : ntron 1 >>>> ValThrArgThrAlaValGlyTyrLeuSerValLeu : 394 bp ::: !!:!||||||:!!|||||||||||||||||| ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeu 34544 : ............agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTC : 34659 vulgar: gi|452887659|gb|AGG17946.1| 327 394 . KQ414804.1 34375 34659 + 107 M 55 165 5 0 2 I 0 79 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34376 34659 107 + . gene_id 1 ; sequence gi|452887659|gb|AGG17946.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34376 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34376 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34659 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34659 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34376 34659 107 + . alignment_id 1 ; Query gi|452887659|gb|AGG17946.1| ; Align 34376 328 165 ; Align 34624 383 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887659|gb|AGG17946.1| olfactory receptor 13 [Microplitis mediator] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 330 -> 394 Target range: 39965 -> 40235 331 : SerAsnLysValCysGluAlaPheTrpAlaCysGlyTrpTyrAspMetProProAspCys : 350 |||!.! !:!! !!:!!:!! !::! !|||..!|||||||||:!:|||||| ! ! SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 351 : IleSerAspValTyrTyrCysIleAlaArgSerGlnLysProLeuAlaLeuThrAlaGly : 370 ! !...:!! ! ! |||..!|||:!!||| ! !!!!! !:!!||||||||| AlaValSerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGly 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGA : 40083 371 : LysPheLeuThrPheGlyTyrGlyThrIleThrAsp >>>> Target Intron 1 > : 383 |||||| ! !!|||..! !! ! !.!!!.!! ! 78 bp LysPheSerProPheSerLeuGluLeuPheAsnAla++ 40084 : AAATTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTgt...................... : 40124 384 : >>> ValThrArgThrAlaValGlyTyrLeuSerValLeu : 394 ||| !!:!|||:!!!.!|||||||||||||||||| ++ValLeuLysThrSerAlaGlyTyrLeuSerValLeu 40125 : ...agGTTTTAAAAACGTCTGCTGGATATCTTTCCGTGTTG : 40235 vulgar: gi|452887659|gb|AGG17946.1| 330 394 . KQ414804.1 39965 40235 + 103 M 52 156 5 0 2 I 0 74 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40235 103 + . gene_id 2 ; sequence gi|452887659|gb|AGG17946.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39966 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40235 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40235 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39966 40235 103 + . alignment_id 2 ; Query gi|452887659|gb|AGG17946.1| ; Align 39966 331 156 ; Align 40200 383 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887651|gb|AGG17942.1| olfactory receptor 10 [Microplitis mediator] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 91 -> 238 Target range: 36527 -> 36959 92 : LysTyrTyrPheIleIlePheArgSerAsnIleIleThrHisCysLeuGluAsnLeuLys : 111 ||| ||| ||| ! !||| :!!..! !! :!!....!.:!! LysLeuIlePheThrIleHisThrSerLeuAlaLeuValPheLeuMetSerGlnIlePhe 36528 : AAACtgattttcacaattcacACGTCTCTAGCGCTAGTATTCTTAATGAGCCAAATATTC : 36585 112 : SerAspTrpAlaArgProLysThrLysGlnAspArgLeuGluMetIleLysAsnValAsn : 131 ..!|||||||||..!|||! !!:!! !||||||! ! !|||:!:|||!.!!.!!!. AspAspTrpAlaGluProIleProGluValAspArgHisThrMetLeuLysThrAlaLys 36586 : GACGACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACGATGCTGAAGACCGCGAAA : 36645 132 : IleGlyHisAsnIleThrLysLeuCysAlaIlePheMetPheSerGlyGlyValSerTyr : 151 |||.!!!..! |||:!!! !:!!|||:!!|||.!.! !!:! ! !! !:!!:!!!:! IleSerArgMetIleSerIleValCysSerIleLeuThrTyrValMetValLeuAlaPhe 36646 : ATTAGTCGAATGATATCCATAGTCTGTTCTATCCTGACGTATGTCATGGTTTTGGCCTTC : 36705 152 : HisThrIleMetProIleTrpSerGlySerThrValAsnGluAlaAsnGluThrIleArg : 171 :!!:!!... ||||||||| |||! ! !||| :!!.!. !.!:!! !! LeuSerLeuGln---IleTrpSer---SerMetGlnAsnThrSerGluPheAsnValGly 36706 : TTGTCACTTCAA---ATTTGGAGC---AGCATGCAAAACACCTCGGAGTTCAACGTAGGA : 36759 172 : ProLeuValTyrProGlyAsnGluIlePheValAsnCysGlnGluThrProIleTyrGlu : 191 !|||:!! !|||!.!!.. !!:! :!! .!.:!!!:!|||! !|||||| GlyLeuLeuIleProAlaThrPheProTyr---AspThrAsnLysSerProAsnTyrGlu 36760 : GGACTACTTATCCCGGCCACATTTCCATAC---GACACGAATAAAAGTCCTAATTACGAA : 36816 192 : PheIlePheIleLeuHisLeuThrCysGlyMetValMetGlnThrIleThrThrAlaAla : 211 .!!! !!:::!! !!!.!!!..! ! !:!!:!!! !! ! ! !:!!..! ! IleThrTrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSerCysPhe 36817 : ATTACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTC : 36876 212 : CysHisLeuAlaAlaValPheAlaSerHisValCysGlyGlnValAspIleLeuLysSer : 231 ! !!!!.!||||||.!!!.!! !|||:!!|||||||||:!! !:!!|||:::! ! AspThrPheValAlaValLeuValLeuHisIleCysGlyGlnLeuThrValLeuArgIle 36877 : GATACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACTGTTCTCCGCATT : 36936 232 : GlnLeuGlnAsnLeuValAsp : 238 |||:!!||||||!.!:!! AlaLeuGluAsnLeuAlaAsn 36937 : GCCCTCGAGAATCTTGCTAAC : 36959 vulgar: gi|452887651|gb|AGG17942.1| 91 238 . KQ414804.1 36527 36959 + 108 M 64 192 G 1 0 M 3 9 G 1 0 M 21 63 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36528 36959 108 + . gene_id 1 ; sequence gi|452887651|gb|AGG17942.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36528 36959 . + . KQ414804.1 exonerate:protein2genome:local exon 36528 36959 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 36528 36959 108 + . alignment_id 1 ; Query gi|452887651|gb|AGG17942.1| ; Align 36528 92 192 ; Align 36720 157 9 ; Align 36729 161 63 ; Align 36792 183 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887653|gb|AGG17943.1| olfactory receptor 9 [Microplitis mediator] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 173 -> 222 Target range: 457264 -> 457411 174 : ValAsnTyrGlyValAspHisAspLysTyrPheTyrAlaIleGluThrHisIleSerP : 193 !.!.!.||| !|||||| ! ||||||.!.:!! !||| .!!||||||! ! AlaGluTyrPheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleT 457265 : GCGGAATACTTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCA : 457322 194 : heCysSerThrLeuValIleThrThrIleIleAlaAlaAspThrLeuPheIleValPh : 212 ||| ! !:!!!.! !||||||:!!! !||| !!!::!!|||.!!|||..! hrCysLeuLeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAs 457323 : CGTGCCTACTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAA : 457379 213 : eValGlnHisIleCysGlyValPheLysIle : 222 !|||! !|||:!!||||||:!!||||||:!! nValLeuHisValCysGlyLeuPheLysLeu 457380 : CGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: gi|452887653|gb|AGG17943.1| 173 222 . KQ414815.1 457264 457411 + 102 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457265 457411 102 + . gene_id 1 ; sequence gi|452887653|gb|AGG17943.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457265 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457265 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457265 457411 102 + . alignment_id 1 ; Query gi|452887653|gb|AGG17943.1| ; Align 457265 174 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747910|gb|AGS43050.1| odorant receptor Or2a [Cephus cinctus] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 325 Query range: 183 -> 405 Target range: 32801 -> 34310 184 : GluValIleGlyThrIleSerIleGlyIleCysSerValAlaPheAlaSerTyrLeuPhe : 203 :!!!.!:!!..!..! !..!:!!|||:!:|||! !:!!..!||| ::: ...||| GlnAlaLeuSerValTyrGlnValGlyValCysTyrLeuCysPheAspAsnIlePhePhe 32802 : CAGGCTTTATCTGTGTACCAAGTTGGAGTGTGTTACCTTTGCTttgataacatttttttc : 32859 204 : TyrThrCysIlePheValSerGlyPhePheLysIleLeuGlnArgGluLeuGluAsnVal : 223 |||:!! !|||:!!||| |||:::||||||||| !..!:!!! |||||| IleMetCysLeuHisValAlaGlyGlnPheArgIleLeuGlnTyrArgIleAlaAsnVal 32860 : attatgtgTCTACACGTGGCTGGTCAGTTTCGTATACTACAATACAGAATTGCCAATGTG : 32919 224 : CysGluVal<->GluLeuGluSerValAsnThrLysSerSerTyrAsnAsnAsnAspThr : 242 ! ! :!! |||:!!! !!.! !||| !!!.!!!||| !.!. !!:!! SerGlyLeuSerGluIleValLysSerAsnAspAsnThrSerThrAlaGluLeuTyrSer 32920 : TCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAATACAAGCACGGCTGAATTATACTCA : 32979 243 : MetLeuAlaTyrLysLysLeuLysLysCysValIleGlnHisGlnLeuLeuIleTrpTyr : 262 ! !..!|||! |||!!!|||!!.|||:!! !||||||||| !|||||| ::: GluLysCysTyrIleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPhe 32980 : GAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTaattgaattt : 33039 263 : LeuGlyLysLeuGluGlyLeuPheSerTyrIleLeuLeuMetLeuValLeuCysAlaVal : 282 ||||||! !:!!|||!!! |||:!!||| ! !|||||| ! ! CysGluIleLeuGluGluValPheThrValIleValLeuGlyGlnValLeuMetPheSer 33040 : tgtgaaatactCGAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTAATGTTTAGC : 33099 283 : IleIleLeuCysPheAlaGlyPheGlnIleIleLeu >>>> Target Intron 1 > : 295 ||||||:!!||||||||||||!:!:!!:!!:!!||| 400 bp IleIleIleCysPheAlaGlyTyrGluValLeuLeu++ 33100 : ATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTGgt...................... : 33140 296 : >>> GlyAspGlyThrThrLysLeuHisArgGlnIleLeuSerValGluPheIleMetA : 313 ! ! !||| ! !!!!.!. !!:::!! !! !..! |||:!:!!:. +-Thr***IleThrLeuProPheGluSerArgValAlaPheThrCysPheLeuIleT 33141 : ...acACATAGATAACGTTACCATTTGAATCGCGCGTTGCTTTCACGTGCTTCTTGATTA : 33592 314 : laAlaLeuAlaGluThrValLeuPheAlaPheSerCysAsnGluIleLeuThrAlaSerA : 333 !!!.!:!!::!:!! ! !:!!|||.!!!:!||||||||| ||| !|||! !||| hrGlyValSerGlnLeuTrpMetPheThrTyrSerCysAsnCysIleThrThrGluSerL 33593 : CGGGCGTGAGTCAACTATGGATGTTCACGTACAGTTGCAATTGCATAACAACAGAAAGCC : 33652 334 : laAlaIleGlyGluAlaAlaTyrArgCysLysTrpTyrLysLeuProCysAspGluTyrG : 353 ! !|||!.!|||:!!!.!||| ! ! !||| !!.|||||| |||::::::| euAsnIleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheG 33653 : TGAACATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATggataaatttg : 33712 354 : lyArgAlaLeuArgGlnGlyMetThrIleMetValMetArgSerTyrLysProCysSerL : 373 ||::: ||||||:!!! !:!: !:!::!::!!:!!|||:!! ::!|||! !:!!| lyLysLeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerAlaL 33713 : gaaaactgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCGCTT : 33772 374 : euThrValGlyLysPheCysProMetThrLeuGluValPheThrSer >>>> Target : 389 |||||!.! !! !|||! ! !!!!:|||||||||..!||||||!.! 4 euThrAlaCysGlyPhePheSerIleThrLeuGluThrPheThrLys++ 33773 : TGACTGCCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTACTAAGgt........... : 33822 390 : Intron 2 >>>> IleLeuSerThrSerLeuSerTyrPheThrValLeuArgSerMe : 403 40 bp |||:!!|||||||||:!!||||||||||||:!!|||!:!..!! ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnSe 33823 : ..............agATCATGAGTACATCAATGTCGTATTTCACCCTACTAAAACAAAG : 34302 404 : tAsnGlu : 405 !||| rAlaGlu 34303 : TGCCGAG : 34310 vulgar: gi|528747910|gb|AGS43050.1| 183 405 . KQ414828.1 32801 34310 + 325 M 43 129 G 0 3 M 68 204 5 0 2 I 0 396 3 0 2 M 94 282 5 0 2 I 0 436 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32802 34310 325 + . gene_id 1 ; sequence gi|528747910|gb|AGS43050.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32802 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32802 33137 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33138 33139 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 33138 33537 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 33536 33537 . + . intron_id 0 ; splice_site "AC" KQ414828.1 exonerate:protein2genome:local cds 33538 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33538 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 2 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34310 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34310 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32802 34310 325 + . alignment_id 1 ; Query gi|528747910|gb|AGS43050.1| ; Align 32802 184 129 ; Align 32934 227 204 ; Align 33538 295 282 ; Align 34260 389 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887647|gb|AGG17940.1| olfactory receptor 7 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 128 Query range: 135 -> 216 Target range: 1224267 -> 1224024 136 : IlePheLeuSerGluProIleLeuProArgIleIleAsnTyrPheSerLysSerAs : 154 :!!!:!:!!||| |||:!::!! !! !:!!:!::!! ! !!:!! !! !|| ValTyrMetSerPheProLeuIleAsnProValLeuAspValValAlaProLeuAs 1224267 : GTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAA : 1224213 155 : nGluSerValProLeuLysPheAlaLeuProLeuGluTyrIleIlePheGluLysG : 173 ||||!!! !|||! !!:!.!! !||||||:!!...||||||.!!.!.!!::!! nGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleAspGluT 1224212 : CGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACGAGT : 1224156 174 : luAsnHisTyrTrpLeuMetLeuAlaIleThrAsnMetPheAlaIleAsnMetIle : 191 ! .!.|||!:!!:: !:!! ! ! ! ! !!! !!.!|||::! yrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSerCysGly 1224155 : ACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGCGGG : 1224102 192 : IleValThrIleSerCysAspIleMetPheIleThrPheValGlnHisValCysGl : 210 !!::!!! !|||:!! |||!!::!:!:!||||||.!!:!! |||:!!||||| MetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCysGl 1224101 : ATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTGCGG : 1224045 211 : yLeuPheAlaValValGly : 216 ||||||||||||| !||| yLeuPheAlaValCysGly 1224044 : ATTGTTCGCAGTGTGTGGG : 1224025 vulgar: gi|452887647|gb|AGG17940.1| 135 216 . KQ414851.1 1224267 1224024 - 128 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224267 128 - . gene_id 1 ; sequence gi|452887647|gb|AGG17940.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224267 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224267 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224267 128 - . alignment_id 1 ; Query gi|452887647|gb|AGG17940.1| ; Align 1224268 136 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887647|gb|AGG17940.1| olfactory receptor 7 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 338 -> 397 Target range: 1242793 -> 1242524 339 : AsnMetLysTrpTyrAsnIleSerLysAsnSerGlnLysLeuThrLeuLeuMetTh : 357 ||| !! !||||||.!.! ! !! ! ! !||||||:!! !! !:!!:!: AsnSerMetTrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIleValGl 1242793 : AACTCGATGTGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATATAGTACA : 1242739 358 : rMetArgSerGlnThrProCysLysLeuThrAlaGlyLysIleMetGluLeuSerI : 376 !!!:|||||| ! !||||||||||||..!|||||| !:!! |||:!!!:!| nIleArgSerGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluMetAsnI 1242738 : AATAAGGTCTGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAATGAACA : 1242682 377 : leGluAsnPheGlyMet >>>> Target Intron 1 >>>> MetMetLysT : 385 |||||||||||||| 92 bp .!.|||| leGluAsnPheGlySer++ ++ThrPheLysT 1242681 : TTGAGAATTTTGGATCAgt.........................agacTTTCAAAA : 1242563 386 : hrSerGlySerTyrPheThrMetLeuLeuSerMetGln : 397 ||!!! !||||||||||||||||||||||||.!.:!! hrCysIleSerTyrPheThrMetLeuLeuSerPheLys 1242562 : CCTGCATATCGTACTTTACGATGCTCTTATCATTCAAA : 1242525 vulgar: gi|452887647|gb|AGG17940.1| 338 397 . KQ414851.1 1242793 1242524 - 127 M 43 129 5 0 2 I 0 88 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242525 1242793 127 - . gene_id 2 ; sequence gi|452887647|gb|AGG17940.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1242665 1242793 . - . KQ414851.1 exonerate:protein2genome:local exon 1242665 1242793 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1242663 1242664 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1242573 1242664 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1242573 1242574 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1242525 1242572 . - . KQ414851.1 exonerate:protein2genome:local exon 1242525 1242572 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242525 1242793 127 - . alignment_id 2 ; Query gi|452887647|gb|AGG17940.1| ; Align 1242794 339 129 ; Align 1242573 382 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887647|gb|AGG17940.1| olfactory receptor 7 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 121 -> 216 Target range: 1243881 -> 1243599 122 : IleSerThrGlyTyrAlaGlyPheAlaTyrThrThrThrAlaIlePheLeuSerGl : 140 ||| ..!..! !:!!||| ! !!:! ! !:!! !||||||:!!! ! IleLeuValSerLeuSerGlyThrLeuPheTyrPheSerIleIlePheValLeuPh 1243881 : atactcGTCTCTCTTTCAGGTACTTTGTTCTATTTCTCGATAATATTCGTATTATT : 1243827 141 : uProIleLeuProArgIleIleAsnTyrPheSerLysSerAsnGluSerValProL : 159 |||:!!:!!|||! !|||:!::!! ! !!||| ! !||||||!!! ! !!! eProLeuIleProProIleLeuAspValValSerProLeuAsnGluThrArgSerA 1243826 : TCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTC : 1243770 160 : euLysPheAlaLeuProLeuGluTyrIleIlePheGluLysGluAsnHisTyrTrp : 177 !! ! ...::: |||:::||| :!:|||!!:! |||...::::::::: rgIleGluValIleLysLeuGlnTyr---LeuPheAspMetGluLysAsnPheTyr 1243769 : GGATAGaagtaataaaattgcaatac---cTGTTCGACAtggagaagaatttttat : 1243719 178 : LeuMetLeuAlaIleThrAsnMetPheAlaIleAsnMetIleIleValThrIleSe : 196 ::: !.! !|||..! !! !:!!.!!! ! !!:!!:|||! !|||!! SerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMetValIleIleTh 1243718 : tcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCAC : 1243662 197 : rCysAspIleMetPheIleThrPheValGlnHisValCysGlyLeuPheAlaValV : 215 ! ||| :!:!:!:!:..!.!!:!!!!.|||..!|||||||||||||||||| rIleAspAlaLeuTyrValValIleIleHisHisThrCysGlyLeuPheAlaValC 1243661 : TATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCTGTTT : 1243605 216 : alGly : 216 !||| ysGly 1243604 : GCGGG : 1243600 vulgar: gi|452887647|gb|AGG17940.1| 121 216 . KQ414851.1 1243881 1243599 - 117 M 46 138 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243881 117 - . gene_id 3 ; sequence gi|452887647|gb|AGG17940.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243881 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243881 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243881 117 - . alignment_id 3 ; Query gi|452887647|gb|AGG17940.1| ; Align 1243882 122 138 ; Align 1243744 169 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887651|gb|AGG17942.1| olfactory receptor 10 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 811 Query range: 3 -> 400 Target range: 303166 -> 305928 4 : GluAsnThrGlnLeuAspAlaAspIleGluTyrAsnLeuLysLeuThrLysTrpIleL : 23 ..!||| !.!.! ! ! !||||||! ||| ! !|||! !!:!|||||||||| ArgAsnLeuAsnTyrLysLysAspIleValTyrValThrLysHisSerLysTrpIleL 303167 : CGGAATTTGAATTACAAGAAAGATATCGTTTACGTTACAAAGCACAGCAAATGGATCC : 303224 24 : euLysProLeuGlyValTrpSerIleValThrLysAspTyrArgPheIleSerLysLe : 42 ||||| !!||||||:!!||| !! !||| ! ! !!: ! !:!! !!! euLysSerLeuGlyIleTrpProAlaValLeuAspGlu---------ThrAlaGlyPh 303225 : TGAAGTCCCTTGGTATTTGGCCAGCCGTGTTGGACGAA---------ACCGCAGGATT : 303272 43 : uSerSerValPheIleIleIleLeuAsnSerPheIleMetPheIleThrPheMetPro : 61 ! ! !! !.!!! !||| !|||!:!!:!!!.:!!:!:!!..!!||| ! !!:||| eLeuProLysIleThrIleGlyLeuSerAsnLeuValLeuLeuPheThrValIlePro 303273 : CCTACCAAAAATCACCATTGGACTCAGTAATTTGGTTCTATTATTCACCGTGATACCG : 303329 62 : CysCysValHisMetIleTyrArgGluThrAspProAlaValLysIleIleLeuMetG : 81 ||| !:!!|||!!:|||!:!..!:!!! !||| !! !:!!!:!:!:! !|||.!.| CysIleLeuHisIleIlePheGluGlnLysAspThrIleIleArgLeuLysLeuPheG 303330 : TGTATTCTACACATAATATTCGAACAAAAGGATACGATAATAAGATTGAAACTATTCG : 303389 82 : lyProPheGlyPheCysLeuThrAsnCysCysLysTyrTyrPheIleIlePheArgSe : 100 ||! !.!..!!|||||||||! !:::! ||||||!:: !:!! ! |||!. lyLeuLeuSerPheCysLeuIleSerLeuMetLysTyrTrpAlaLeuAlaThrArgLy 303390 : GTCTGCTGAGTTTCTGTTTGATCTCGTTGATGAAGTATTGGGCCCTCGCCACGCGGAA : 303446 101 : rAsnIleIleThrHisCysLeuGluAsnLeuLysSerAspTrpAlaArg >>>> Ta : 117 ! ! |||! !.!.|||:!!|||.!.:!!:!!||||||||| !..! sProArgIleLysGluCysIleGluGluValGlnSerAspTrpLysGlu++ 303447 : ACCAAGGATCAAAGAATGTATAGAAGAGGTGCAAAGTGATTGGAAAGAGgt....... : 303499 118 : rget Intron 1 >>>> ProLysThrLysGlnAspArgLeuGluMetIleLysAs : 129 938 bp !:!!:!! ::!|||||| ! !|||:!!||| ! ++ValGluSerLeuArgAspArgGluMetMetLeuLysTy 303500 : ..................agGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAATA : 304471 130 : nValAsnIleGlyHisAsnIleThrLysLeuCysAlaIlePheMetPheSerGlyGly : 148 !! !.!.!!:|||!..|||:!:|||! !:!!|||||||||||||||!:!!!!|||||| rGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGly 304472 : CGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGGC : 304528 149 : ValSerTyrHisThrIleMetProIleTrpSerGlySerThrValAsnGluAlaAsnG : 168 ..!! !|||||||||:!!|||! !.!! !!!!|||!!! !|||:!!||| !|||. ThrIleTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyrAsnA 304529 : ACCATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTATAATC : 304588 169 : luThrIleArgProLeuValTyrProGlyAsnGluIlePheValAsnCysGlnGluTh : 187 ..||||||!:!||||||||||||||| ! !!... !!!. !!:!! !||| !!: rgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnThrSe 304589 : GTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAACAAG : 304645 188 : rProIleTyrGluPheIlePheIleLeuHisLeuThrCysGlyMetValMetGlnThr : 206 !||||||||||||!!.:!!!:!.!!:!!|||! !! !|||||| |||!!: ! :!! rProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTyrSer 304646 : CCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTATTCT : 304702 207 : IleThrThrAlaAlaCysHisLeuAlaAlaValPheAlaSerHisValCysGlyGlnV : 226 ||||||.!!!.!|||||| |||||||||:!!||||||!!!|||!.!|||||||||: IleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGlyGlnI 304703 : ATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGACAAA : 304762 227 : alAspIleLeuLysSerGlnLeuGlnAsnLeuValAspLysGluSerLeuLysIleAs : 245 !!||||||:!!! !|||!:!||| :!!||||||:!!!.. ||| !.. leAspIleValMetSerArgLeuGlyAspLeuValAsnSer---------LysGluSe 304763 : TTGATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGC---------AAAGAATC : 304810 246 : pGlyThrIleGluAsnArgIleAlaSerIleIleGlnSerHisValArgIleLeu{As : 264 ...! !:!!!!:!!.|||:!! !..!|||:!!:!! !|||:!!|||||||||{ rSerAspLeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIleLeu{Ar 304811 : ATCTGATTTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTA{AG : 304867 265 : } >>>> Target Intron 2 >>>> {p}PheSerThrAsnIleGluLysMetL : 273 } 70 bp { }||||||.!!! :!::!!! !:!!| }++ ++{g}PheSerAlaIleValGlnThrValL 304868 : }gt.........................ag{A}TTCTCGGCAATAGTGCAAACAGTGT : 304964 274 : euArgGluIleCysLeuValGluValGlyAlaSerThrLeuIleIleCysLeuLeuGl : 292 ||!:!|||:!!|||!!!:!!||| !! !!.!|||||||||:!:|||||||||||||| euGlnGluValCysPheLeuGluPheIleGlySerThrLeuLeuIleCysLeuLeuGl 304965 : TGCAAGAAGTATGCTTCTTGGAATTCATTGGTTCTACCTTACTGATATGTCTACTTGA : 305021 293 : uTyrTyrCysMetThr >>>> Target Intron 3 >>>> GluTrpSerAsnS : 302 ||||||||||!!:||| 62 bp !!:|||..!!:!| uTyrTyrCysIleThr++ ++AspTrpGluSerS 305022 : ATACTACTGTATAACGgt.........................agGATTGGGAGAGCA : 305113 303 : erGluThrIleAsnIleLeuThrTyrLeuMetLeuLeuValAlaLeuSerPheAsnIl : 321 ||.!.|||:!!!:!:!! !|||||| !:!!||||||:!!:!!:!!!!!|||||||| erAsnThrValSerLeuThrThrTyrThrValLeuLeuIleSerValThrPheAsnIl 305114 : GTAATACCGTTAGTCTTACAACATATACAGTGTTACTGATATCTGTAACATTTAATAT : 305170 322 : ePheIlePheCysTyrIleGlyGluLeuLeuLysLysGln >>>> Target Intr : 335 |||||||!!.|||||||||||||||:!!|||! !:!!:!! 413 bp ePheIleLeuCysTyrIleGlyGluIleLeuMetGluLys++ 305171 : ATTCATATTATGCTACATTGGTGAGATTCTTATGGAAAAGgt................ : 305214 336 : on 4 >>>> CysAsnSerIleGlyGluSerThrTyrMetIleAsnTrpTyrLysIl : 350 !!!:!|||:!!||| !||| !!:!||||||!:!|||||| ! :! ++SerSerSerValGlyLeuSerCysPheMetIleSerTrpTyrHisLe 305215 : .........agAGCAGTAGCGTTGGATTATCCTGTTTTATGATCAGTTGGTACCATTT : 305670 351 : eProArgAsnLysGlyLysGlnLeuMetLeuIleIleAlaSerSerAsnAsnGlnArg : 369 !|||! !!!.! ! ! ! |||!!:||||||||||||! !|||!:!|||! ! ! uProThrLysThrIleHisGlyLeuIleLeuIleIleAlaMetSerSerAsnProAla 305671 : ACCGACTAAGACGATACATGGTCTTATTTTAATCATTGCCATGTCAAGTAATCCAGCT : 305727 370 : LysLeuThrAlaGlyGlyMetMetGluLeuSerLeuArgSerPheGlyAsn >>>> : 387 |||:!!!:!|||||| !:!::!:!!:||||||||| !!!!||||||||| LysIleSerAlaGlyLysValValAspLeuSerLeuSerThrPheGlyAsn++ 305728 : AAAATCAGTGCTGGTAAAGTAGTTGATTTATCTTTATCCACATTTGGAAACgt..... : 305783 388 : Target Intron 5 >>>> IleIleLysThrSerValAlaTyrLeuAsnMetLeu : 398 106 bp :!!:!:|||||||||:!!|||||||||!:!.!.||| ++ValLeuLysThrSerLeuAlaTyrLeuSerPheLeu 305784 : ....................agGTTCTGAAAACGTCATTAGCGTATTTAAGTTTCCTT : 305920 399 : ArgThr : 400 |||||| ArgThr 305921 : CGGACT : 305928 vulgar: gi|452887651|gb|AGG17942.1| 3 400 . KQ414889.1 303166 305928 + 811 M 32 96 G 3 0 M 78 234 5 0 2 I 0 934 3 0 2 M 123 369 G 3 0 M 21 63 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 33 99 5 0 2 I 0 58 3 0 2 M 37 111 5 0 2 I 0 409 3 0 2 M 52 156 5 0 2 I 0 102 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 303167 305928 811 + . gene_id 1 ; sequence gi|452887651|gb|AGG17942.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 303167 303496 . + . KQ414889.1 exonerate:protein2genome:local exon 303167 303496 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 303497 303498 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 303497 304434 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304433 304434 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304435 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304435 304868 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305038 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305038 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305039 305040 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305039 305100 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 305099 305100 . + . intron_id 2 ; splice_site "aG" KQ414889.1 exonerate:protein2genome:local cds 305101 305211 . + . KQ414889.1 exonerate:protein2genome:local exon 305101 305211 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305212 305213 . + . intron_id 4 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305212 305624 . + . intron_id 4 KQ414889.1 exonerate:protein2genome:local splice3 305623 305624 . + . intron_id 3 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305625 305780 . + . KQ414889.1 exonerate:protein2genome:local exon 305625 305780 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 305781 305782 . + . intron_id 5 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 305781 305886 . + . intron_id 5 KQ414889.1 exonerate:protein2genome:local splice3 305885 305886 . + . intron_id 4 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 305887 305928 . + . KQ414889.1 exonerate:protein2genome:local exon 305887 305928 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 303167 305928 811 + . alignment_id 1 ; Query gi|452887651|gb|AGG17942.1| ; Align 303167 4 96 ; Align 303263 39 234 ; Align 304435 117 369 ; Align 304804 243 63 ; Align 304940 265 99 ; Align 305101 298 111 ; Align 305625 335 156 ; Align 305887 387 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887651|gb|AGG17942.1| olfactory receptor 10 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 625 Query range: 3 -> 337 Target range: 289705 -> 291488 4 : GluAsnThrGlnLeuAspAlaAspIleGluTyrAsnLeuLysLeuThrLysTrpIleL : 23 ..!||| !!::! !!!:.!!||||||...|||!..!!!:!!||| ! ! ||||||| SerAsnAspArgTyrGluThrAspIleArgTyrThrPheGluLeuCysHisTrpIleL 289706 : TCGAACGATCGTTACGAAACGGACATACGTTACACGTTCGAATTATGCCATTGGATCT : 289763 24 : euLysProLeuGlyValTrpSerIleValThrLysAspTyrArgPheIleSerLysLe : 42 ||||||||:!!|||:!!!:: !!.!!||| !!.. ! !!! !..!::! euLysProIleGlyMetTyrProPheValPheSerArgAlaSerArgArgGluArgTh 289764 : TGAAACCGATAGGCATGTATCCTTTCGTCTTTAGCCGTGCGAGCAGACGCGAACGAAC : 289820 43 : uSerSerValPheIleIleIleLeuAsnSerPheIleMetPheIleThrPheMetPro : 61 !:!!||||||!!.:!:|||:!::!! !!!!! |||:!: .!!! !.!.:!:||| rAlaSerValLeuLeuIleLeuValCysCysSerIleLeuGlnPheIleIleValPro 289821 : GGCGTCGGTGTTGCTGATTCTGGTATGTTGCTCGATCCTCCAGTTCATCATAGTACCG : 289877 62 : CysCysValHisMetIleTyrArgGluThrAspProAlaValLysIleIleLeuMetG : 81 ! ! !! !|||:!::!!!:!!!!!!:!.!||| ! !..! :!!! !:!:| PheSerHisHisValLeuPheSerAspAsnAspMetAsnThrPheValLysAsnLeuG 289878 : TTCAGTCATCACGTTCTATTCAGCGACAACGACATGAACACGTTCGTTAAGAATCTCG : 289937 82 : lyProPheGlyPheCysLeuThrAsnCysCysLysTyrTyrPheIleIlePheArgSe : 100 |||||!!. !||||||||||||!..! !! !||||||! !!:!.!!! !.!.!:!.! lyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetLysGl 289938 : GACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGAAAGG : 289994 101 : rAsnIleIleThrHisCysLeuGluAsnLeuLysSerAspTrpAlaArgProLysThr : 119 !::: ||| !!.!|||:!!:!!:!!:!!:!!!!!|||||| !! ! !::: ! ySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuArgAsp 289995 : TTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCGTGAC : 290051 120 : LysGlnAspArgLeuGluMetIleLysAsnValAsnIleGlyHisAsnIleThrLysL : 139 :!!.!. !!|||:!! |||:!!!:! !!|||!..!!:.!!!..|||:!!! !|||| GluAspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIleLysL 290052 : GAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATAAAAC : 290111 140 : euCysAlaIlePheMetPheSerGlyGlyValSerTyrHisThrIleMetProIleTr : 158 ||||||||||||||:!!!:!! !||||||:!!||||||:!!|||:!!!!:|||:!:!: euCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIleProLeuPh 290112 : TGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCGTTGTT : 290168 159 : pSerGlySerThrValAsnGluAlaAsnGluThrIleArgProLeuValTyrProGly : 177 :||| !!.!!:!|||||| !.!|||! !|||||||||||||||..!||||||||| eSerLysLysSerValAsn---GlyAsnValThrIleArgProLeuThrTyrProGly 290169 : CTCGAAGAAGAGCGTGAAC---GGTAACGTGACTATCAGACCTCTAACTTATCCCGGT : 290222 178 : AsnGluIlePheValAsnCysGlnGluThrProIleTyrGluPheIlePheIleLeuH : 197 !!||| ||| !!:!! !|||:!!!:!||| ||||||.!!:!!||| !:!!| TyrGluGluPhePheAspValGlnLysSerProAlaTyrGluIleValPheCysMetH 290223 : TACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTCTTCTGTATGC : 290282 198 : isLeuThrCysGlyMetValMetGlnThrIleThrThrAlaAlaCysHisLeuAlaAl : 216 ||! !..!! !! !|||:!!! ! !!.!||||||! !||||||! ! !|||.!!.! isCysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrSerLeuThrTh 290283 : ACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACAGTTTGACGAC : 290339 217 : aValPheAlaSerHisValCysGlyGlnValAspIleLeuLysSerGlnLeuGlnAsn : 235 !:!!||||||!!!|||..!|||||||||:!! ! |||! !! !!!!!:!|||:!!:!! rIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrArgLeuGluAsp 290340 : GATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCGGCTGGAGGAT : 290396 236 : LeuValAspLysGluSerLeuLysIleAspGlyThrIleGluAsnArgIleAlaSerI : 255 |||..! |||..!.!!:!! !:!:!!: ! !:!:...:!!|||:!:||| !: LeuThr---LysArgGlyMetLeuLeuGluLysGlyValSerAspArgLeuAlaValV 290397 : CTGACA---AAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTGGCGGTTG : 290453 256 : leIleGlnSerHisValArgIleLeu{As} >>>> Target Intron 1 >>>> : 264 !!:!:....!!||||||..!||||||{ !} 655 bp alValSerGlyHisValGluIleLeu{Ly}++ + 290454 : TTGTGAGCGGTCACGTGGAGATCTTG{AA}gt.........................a : 291135 265 : {p}PheSerThrAsnIleGluLysMetLeuArgGluIleCysLeuValGluValGly : 282 { }|||!!!! !! ||||||!.. !|||!.!||||||! !|||:!!|||||| ! +{s}PheThrArgMetIleGluSerAlaLeuHisGluIlePheLeuIleGluValIle 291136 : g{A}TTCACGAGGATGATCGAAAGCGCGTTGCATGAAATATTCTTGATAGAAGTAATA : 291189 283 : AlaSerThrLeuIleIleCysLeuLeuGluTyrTyrCysMetThr >>>> Target : 298 !.!||||||:!!:!!:!!||||||:!!|||||| !! |||! ! 1 ValSerThrValLeuLeuCysLeuIleGluTyrLeuLeuMetMet++ 291190 : GTATCCACTGTGTTACTATGCTTGATCGAATATCTCTTAATGATGgt........... : 291239 299 : Intron 2 >>>> GluTrpSerAsnSerGluThrIleAsnIleLeuThrTyrLeu : 311 32 bp ||||||..!!:!|||!!::!!|||...||||||||||||:!! ++GluTrpGluSerSerAspSerIleGlyIleLeuThrTyrVal 291240 : ..............agGAATGGGAGAGTAGCGATTCGATCGGGATATTAACATACGTC : 291408 312 : MetLeuLeuValAlaLeuSerPheAsnIlePheIlePheCysTyrIleGlyGluLeuL : 331 ! ||||||..!:!!!!!!!!|||||||||.!.||||||||||||:!!|||||||||| ThrLeuLeuThrSerPheThrPheAsnIleLeuIlePheCysTyrValGlyGluLeuL 291409 : ACTCTCCTCACTTCTTTCACTTTCAACATACTGATATTCTGTTACGTTGGCGAACTTC : 291468 332 : euLysLysGlnCysAsnSer : 337 || !||| !:!!!! euLeuGlyGlnValSerThr 291469 : TTCTTGGACAGGTAAGTACT : 291488 vulgar: gi|452887651|gb|AGG17942.1| 3 337 . KQ414889.1 289705 291488 + 625 M 161 483 G 1 0 M 72 216 G 1 0 M 25 75 S 0 2 5 0 2 I 0 651 3 0 2 S 1 1 M 33 99 5 0 2 I 0 128 3 0 2 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289706 291488 625 + . gene_id 2 ; sequence gi|452887651|gb|AGG17942.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 289706 290481 . + . KQ414889.1 exonerate:protein2genome:local exon 289706 290481 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 290482 290483 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 290482 291136 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 291135 291136 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 291137 291236 . + . KQ414889.1 exonerate:protein2genome:local exon 291137 291236 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 291237 291238 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 291237 291368 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 291367 291368 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 291369 291488 . + . KQ414889.1 exonerate:protein2genome:local exon 291369 291488 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 289706 291488 625 + . alignment_id 2 ; Query gi|452887651|gb|AGG17942.1| ; Align 289706 4 483 ; Align 290189 166 216 ; Align 290405 239 75 ; Align 291138 265 99 ; Align 291369 298 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887651|gb|AGG17942.1| olfactory receptor 10 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 540 Query range: 1 -> 343 Target range: 284487 -> 287016 2 : SerThrGluAsnThrGlnLeuAspAlaAspIleGluTyrAsnLeuLysLeuThrLysT : 21 |||:!! :!!:!! !! !|||.!!||| !|||!:!:!!:!!:!!!.!:::| SerSerThrAspSerThrTrpAspThrAspTrpMetTyrSerValGlnMetAsnArgT 284488 : TCTTCAACCGATTCGACGTGGGACACGGATTGGATGTACAGCGTACAGATGAACCGTT : 284545 22 : rpIleLeuLysProLeuGlyValTrpSerIleValThrLysAspTyrArgPheIleSe : 40 ||.!!|||||||||:!!||||||||| !!:!! !:! ! ! ! !:!:.. rpPheLeuLysProIleGlyValTrpProLeu---SerLeuCysValThrThrLeuGl 284546 : GGTTTCTCAAACCGATTGGCGTATGGCCTCTC---AGTCTCTGCGTGACCACCTTGGA : 284599 41 : rLysLeuSerSerValPheIleIleIleLeuAsnSerPheIleMetPheIleThrPhe : 59 !|||:!!||||||||| !!:!! :!!:!!!:!!!!|||:!:!!: !.!! !!!. uLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeu 284600 : AAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTTCCTGATAGGTTTCCTCTTG : 284656 60 : MetProCysCysValHisMetIleTyrArgGluThr<->AspProAlaValLysIleI : 78 :!:||||||..!:!! !! :!: ! !:!!||| |||! !! !..!||||||! ValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleL 284657 : GTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCA : 284716 79 : leLeuMetGlyProPheGlyPheCysLeuThrAsnCysCysLysTyrTyrPheIleIl : 97 !:!!!!:||||||.!..!!||||||:!!! ! ... !|||||||||.!!:!!|| ysMetIleGlyProLeuSerPheCysMetMetAlaAlaIleLysTyrTyrIleLeuIl 284717 : AAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGATCAAGTATTACATTCTAAT : 284773 98 : ePheArgSerAsnIleIleThrHisCysLeuGluAsnLeuLysSerAsp{Tr} >>> : 114 |! |||.!!..!! ||| !!!.|||:!!:!!:!!:!!::::!!|||{||} eSerArgGlyGlyLysIleGlyGlnCysValLysAspIleArgAlaAsp{Tr}++ 284774 : TTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACATTCGTGCGGAC{TG}gt... : 284828 115 : > Target Intron 1 >>>> {p}AlaArgProLysThrLysGlnAspArgLeuG : 125 1012 bp {|} ! !! !!.. :::::::::||| +-{p}LeuSerHisSerGlnGluGluGluArgGluI 284829 : ......................ac{G}CTTTCGCATAGtcaagaagaggagagagaga : 285869 126 : luMetIleLysAsnValAsnIleGlyHisAsnIleThrLysLeuCysAlaIlePheMe : 144 |||! ! !:!!.!!..||||||!..::!:!:.!!! !!!|||||| !||||| leMetArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMe 285870 : tcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCAT : 285926 145 : tPheSerGlyGlyValSerTyrHisThrIleMetProIleTrpSerGlySerThrVal : 163 |!:!||||||||| !!! !||| !|||:!:||||||:!:!! !!!! ! !!|||! ! tTyrSerGlyGlyPhePheTyrThrThrValMetProLeuCysThrValArgThrGlu 285927 : GTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTTGTGCACAGTACGCACGGAG : 285983 164 : AsnGluAlaAsnGluThrIleArgProLeuValTyrProGlyAsnGluIlePheValA : 183 ! ! ! !|||||||||:!:||| !!! !!.!!:!||| ! !!... !.!!:!!: IleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuA 285984 : ATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTCG : 286043 184 : snCysGlnGluThrProIleTyrGluPheIlePheIleLeuHisLeuThrCysGlyMe : 202 !! !:: !:!||| !:!|||.!!:!: .!!:!!!!.! ! !..!!.!.! spProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPh 286044 : ATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTT : 286100 203 : tValMetGlnThrIleThrThrAlaAlaCysHisLeuAlaAlaValPheAlaSerHis : 221 .|||!!: ! :!!:!!|||..!!.!|||||| !|||||||||||||||!.!! !||| eValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHis 286101 : CGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCAC : 286157 222 : ValCysGlyGlnValAspIleLeuLysSerGlnLeuGlnAsnLeuValAsp<->LysG : 240 |||||||||||| !! |||||| !!!!:!!|||.!.!!.||||||||| !: ValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAspGlyValL 286158 : GTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGACGGAGTGA : 286217 241 : luSerLeuLysIleAspGlyThrIleGluAsnArgIleAlaSerIleIleGlnSerHi : 259 !!.!! !||| .!!||| !|||.!.|||:!:!.!..!||||||:!! !|| ysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHi 286218 : AAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCA : 286274 260 : sValArgIleLeu{As} >>>> Target Intron 2 >>>> {p}PheSerThr : 267 |:!!!:!||||||{! } 408 bp {!}|||! !:!! sLeuLysIleLeu{Gl}++ ++{y}PheIleSer 286275 : TCTGAAGATACTG{GG}gt.........................ag{T}TTTATATCG : 286706 268 : AsnIleGluLysMetLeuArgGluIleCysLeuValGluValGlyAlaSerThrLeuI : 287 .!.|||||| !:!:|||!.!|||||||||!!!||||||||| !!.!!!!||||||! GlnIleGluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuA 286707 : CAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGA : 286766 288 : leIleCysLeuLeuGluTyrTyrCysMetThr >>>> Target Intron 3 >>> : 298 !||||||!!!|||! !||||||! :!!||| 80 bp snIleCysPheLeuGlyTyrTyrLeuLeuThr++ 286767 : ACATATGCTTTTTGGGATATTATTTACTGACGgt........................ : 286801 299 : > GluTrpSerAsnSerGluThrIleAsnIleLeuThrTyrLeuMetLeuLeuValA : 316 ||||||..!.!.||||||||||||...! :!!||||||! !! !|||||||||: ++GluTrpGluGlnSerGluThrIleGlyThrIleThrTyrCysThrLeuLeuValS 286802 : .agGAATGGGAGCAAAGTGAAACTATAGGAACGATCACGTATTGCACGTTGCTGGTAT : 286933 317 : laLeuSerPheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuLysLysGlnCy : 335 !!!!!!!!||||||:!!||||||.!!|||||||||||||||:!!|||...:!!||| erPheThrPheAsnValPheIleLeuCysTyrIleGlyGluIleLeuSerGluGlnVa 286934 : CTTTCACGTTCAACGTTTTCATACTCTGTTACATCGGTGAAATTCTCTCCGAACaggt : 286990 336 : sAsnSerIleGlyGluSerThrTyr : 343 ||| ...!!!! !||| lPhePheIleThrSerThrIleTyr 286991 : atttttcattacttcaACGATCTAT : 287016 vulgar: gi|452887651|gb|AGG17942.1| 1 343 . KQ414889.1 284487 287016 + 540 M 30 90 G 1 0 M 39 117 G 0 3 M 42 126 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 124 372 G 0 3 M 25 75 S 0 2 5 0 2 I 0 404 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284488 287016 540 + . gene_id 3 ; sequence gi|452887651|gb|AGG17942.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284488 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284488 284825 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286698 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286798 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286798 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286799 286800 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286799 286878 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 286877 286878 . + . intron_id 2 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286879 287016 . + . KQ414889.1 exonerate:protein2genome:local exon 286879 287016 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284488 287016 540 + . alignment_id 3 ; Query gi|452887651|gb|AGG17942.1| ; Align 284488 2 90 ; Align 284578 33 117 ; Align 284698 72 126 ; Align 285839 115 372 ; Align 286214 239 75 ; Align 286700 265 99 ; Align 286879 298 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887651|gb|AGG17942.1| olfactory receptor 10 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 517 Query range: 1 -> 343 Target range: 278540 -> 280229 2 : SerThrGluAsnThrGlnLeuAspAlaAspIleGluTyrAsnLeuLysLeuThrLysT : 21 |||:!! :!!:!! !! !:!!.!!||| !|||!:!:!!:!!:!!!.!:::| SerSerThrAspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnArgT 278541 : TCGTCAACCGATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACCGTT : 278598 22 : rpIleLeuLysProLeuGlyValTrpSerIleValThrLysAspTyrArgPheIleSe : 40 ||.!!|||||||||:!!||||||||| !!:!! !:! ! ! ! !:!:.. rpPheLeuLysProIleGlyValTrpProLeu---SerLeuCysValThrThrLeuGl 278599 : GGTTTCTCAAACCGATTGGCGTATGGCCTCTC---AGTCTCTGCGTGACCACCTTGGA : 278652 41 : rLysLeuSerSerValPheIleIleIleLeuAsnSerPheIleMetPheIleThrPhe : 59 !|||:!!||||||||| !!:!! :!!:!!!:!!!!|||:!:!!: !.!! !!!. uLysIleSerSerValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeuLeu 278653 : AAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTCTTG : 278709 60 : MetProCysCysValHisMetIleTyrArgGluThr<->AspProAlaValLysIleI : 78 :!:||||||..!:!! !! :!: ! !:!!||| |||! !! !..!||||||! ValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysIleL 278710 : GTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGATCA : 278769 79 : leLeuMetGlyProPheGlyPheCysLeuThrAsnCysCysLysTyrTyrPheIleIl : 97 !:!!!!:||||||.!..!!|||||| !! ! !|||||||||.!!:!!!! ysMetIleGlyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLeuMe 278770 : AAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCTAAT : 278826 98 : ePheArgSerAsnIleIleThrHisCysLeuGluAsnLeuLysSerAspTrpAlaArg : 116 :! |||.!!..!! ||| ! ! |||:!!.!.:!!:!!:::!!!||||||:!!! ! tSerArgGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSerLeu 278827 : GTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCTCTT : 278883 117 : Pro<-><-><->LysThrLysGlnAspArgLeuGluMetIleLysAsnValAsnIleG : 133 !! ::: :::::::::||| |||! ! !:!!.!!..|||| ThrLeuSerTyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgIleG 278884 : ACACTTTCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTG : 278943 134 : lyHisAsnIleThrLysLeuCysAlaIlePheMetPheSerGlyGlyValSerTyrHi : 152 ||!..::!:!:.!!! !!! !!||| !||||||!:!||||||||||||! !||| lyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTyrTh 278944 : GACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTACAC : 279000 153 : sThrIleMetProIleTrpSerGlySerThrValAsnGluAlaAsnGluThrIleArg : 171 !.!!:!:||||||:!:!:::!!! ! !!|||! !! ! ! !|||||||||:!:||| rAlaValMetProLeuPheAlaValArgThrGluIleIleAspAsnGluThrValArg 279001 : CGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCATCGACAATGAAACGGTGAGA : 279057 172 : ProLeuValTyrProGlyAsnGluIlePheValAsnCysGlnGluThrProIleTyrG : 191 !!! !!.!!:!||| ! !!... !.!!:!!:!! !:: !:!||| !:!| SerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerProSerPheG 279058 : TCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCCCGTCGTTCG : 279117 192 : luPheIlePheIleLeuHisLeuThrCysGlyMetValMetGlnThrIleThrThrAl : 210 ||.!!:!: .!!:!!!!.! ! !..!!.!.!.|||:!: ! :!!:!!|||..!!. luIleValGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerValThrValGl 279118 : AGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGTCACTGTTGG : 279174 211 : aAlaCysHisLeuAlaAlaValPheAlaSerHisValCysGlyGlnValAspIleLeu : 229 !|||||| !||| !|||||||||!.!! !||||||||||||||| !! |||||| yAlaCysSerLeuIleAlaValPheValMetHisValCysGlyGlnPheArgIleLeu 279175 : AGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTCAGGATACTT : 279231 230 : LysSerGlnLeuGlnAsnLeuValAsp<->LysGluSerLeuLysIleAspGlyThrI : 248 !!!!:!!|||.!.!!.|||:!!||| !:!!.!! !|||! ! .!!||| ValThrLysLeuAspLysLeuIleAspGlyValLysGlyArgLysSerLeuSerThrH 279232 : GTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGGAGGAAGAGCTTGAGCACGC : 279291 249 : leGluAsnArgIleAlaSerIleIleGlnSerHisValArgIleLeu{As} >>>> : 264 !|||.!.|||:!:!.!..!||||||:!! !|||:!!!:!||||||{! } isGluGlnArgLeuGlyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 279292 : ATGAACAACGACTGGGAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt..... : 279343 265 : Target Intron 1 >>>> {p}PheSerThrAsnIleGluLysMetLeuArgGlu : 275 571 bp {!}|||! !:!!.!.|||||| !:!:|||!.!||| ++{y}PheIleSerGlnIleGluGlyLeuLeuAsnGlu 279344 : ....................ag{T}TTTATATCGCAAATCGAGGGGCTCCTGAACGAA : 279943 276 : IleCysLeuValGluValGlyAlaSerThrLeuIleIleCysLeuLeuGluTyrTyrC : 295 ||||||!!!||||||||| !!.!!!!||||||! !||||||!!!||| !||||||! IleCysPheValGluValIleGlyCysThrLeuAsnIleCysPheLeuThrTyrTyrL 279944 : ATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATATGCTTTTTGACATATTATT : 280003 296 : ysMetThr >>>> Target Intron 2 >>>> GluTrpSerAsnSerGluThr : 304 :!:||| 80 bp ||||||..!.!.!:!!!:.!! euLeuThr++ ++GluTrpGluGlnAsnAspAla 280004 : TACTCACGgt.........................agGAATGGGAGCAAAATGACGCT : 280110 305 : IleAsnIleLeuThrTyrLeuMetLeuLeuValAlaLeuSerPheAsnIlePheIleP : 324 |||...! !!!||||||||||||!!!|||:!!:!!|||!!!||||||:!!||||||. IleGlyThrPheThrTyrLeuMetPheLeuIleSerLeuThrPheAsnValPheIleL 280111 : ATAGGAACGTTCACGTATTTAATGTTTCTCATATCTTTAACGTTCAACGTTTTCATAC : 280170 325 : heCysTyrIleGlyGluLeuLeuLysLysGlnCysAsnSerIleGlyGluSerThrTy : 343 !!|||||||||||||||:!!|||...:!!||| |||......::!! !|| euCysTyrIleGlyGluIleLeuSerGluGlnValPhePheIleSerSerThrIleTy 280171 : TCTGTTACATCGGTGAAATTCTCTCCGAACaggtatttttcatttcttcaacGATCTA : 280227 344 : r : 343 | r 280228 : T : 280229 vulgar: gi|452887651|gb|AGG17942.1| 1 343 . KQ414889.1 278540 280229 + 517 M 30 90 G 1 0 M 39 117 G 0 3 M 46 138 G 0 9 M 121 363 G 0 3 M 25 75 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 33 99 5 0 2 I 0 76 3 0 2 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278541 280229 517 + . gene_id 4 ; sequence gi|452887651|gb|AGG17942.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278541 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278541 279340 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280011 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280011 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280012 280013 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280012 280091 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 280090 280091 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280092 280229 . + . KQ414889.1 exonerate:protein2genome:local exon 280092 280229 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278541 280229 517 + . alignment_id 4 ; Query gi|452887651|gb|AGG17942.1| ; Align 278541 2 90 ; Align 278631 33 117 ; Align 278751 72 138 ; Align 278898 118 363 ; Align 279264 239 75 ; Align 279913 265 99 ; Align 280092 298 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887651|gb|AGG17942.1| olfactory receptor 10 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 472 Query range: 11 -> 331 Target range: 226924 -> 228349 12 : IleGluTyrAsnLeuLysLeuThrLysTrpIleLeuLysProLeuGlyValTrpSerI : 31 :!:.!. !:!:!!:!!|||!.!:::|||:!:|||||||||||||||:!!||| !! LeuAsnLeuSerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProS 226925 : TTGAACCTGAGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGT : 226982 32 : leValThrLysAspTyrArgPheIleSerLysLeuSerSerValPheIleIleIleLe : 50 ! !|||..!! !||| |||.!!!:!! !! !||| !!!.!!: !.!!|| erSerArgLysSerSerArg---IleGlyArgCysPheSerTrpLeuMetGlyPheLe 226983 : CGTCGCGCAAAAGCTCTCGA---ATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCT : 227036 51 : uAsnSerPheIleMetPheIleThrPheMetProCysCysValHisMetIleTyrArg : 69 | !! ! :!:||| !.!! !!!.:!: !! !! !!:!!:!!:!!:!! ..! uCysTyrAlaLeuMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGlu 227037 : CTGTTACGCGCTGATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAG : 227093 70 : GluThrAspProAlaValLysIleIleLeuMetGlyProPheGlyPheCysLeuThrA : 89 ! !! !! ! !! ! !! !:!:! !:!!!!:||||||.!...!|||! ! !! !: ValLysGlyAlaTyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetS 227094 : GTGAAAGGCGCTTACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGT : 227153 90 : snCysCysLysTyrTyrPheIleIlePheArgSerAsnIleIleThrHisCysLeuGl : 108 :! ! !||||||! !.!.:!:! |||!.!..!:!! !||| !.!.|||:!!|| erLeuLeuLysTyrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGl 227154 : CCCTCCTCAAGTACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGA : 227210 109 : uAsnLeuLysSerAspTrpAlaArgProLysThrLysGlnAspArgLeuGluMetIle : 127 |...:!!|||!!!|||||| !!.! !!:! ! !:!!|||||| !! !|||:!: uArgIleLysTrpAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetVal 227211 : ACGGATCAAATGGGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTG : 227267 128 : LysAsnValAsnIleGlyHisAsnIleThrLysLeuCysAlaIlePheMetPheSerG : 147 ! ! !!!.! !! !|||...!!.:!:! !! :!!|||.!!.!!|||:!:||||||. ThrTyrAlaTyrTyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerS 227268 : ACGTACGCGTATTACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgta : 227327 148 : lyGlyValSerTyrHisThrIleMetProIleTrpSerGlySerThrValAsnGlu<- : 166 .. ||| ::::::! !:!!:!:|||||| :!!||||||..!!.!!..||| erPheValPhePheTyrIleValValProIleAsnAlaGlySerValAlaThrGluAs 227328 : gtttcgtatttttctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGA : 227384 167 : >AlaAsnGluThrIleArgProLeuValTyrProGlyAsnGluIlePheValAsnCys : 184 !.!|||.!.!:! !! !! !:!! !!:!||| ! :!!|||.!!!.!:!! ! pGlyAsnHisSerTyrIleGlnMetProPheProPheProLysIleIleAlaAspVal 227385 : CGGAAACCACAGTTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTT : 227441 185 : GlnGluThrProIleTyrGluPheIlePheIleLeuHisLeuThrCysGlyMetValM : 204 !:: ! !:!|||.!! !!|||.!!.!!||| :!!!!.!!!..! |||!!:|||: ArgTyrSerProPheAsnGluIlePhePheSerValGlnPheValThrGlyIleValL 227442 : CGTTACAGCCCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGT : 227501 205 : etGlnThrIleThrThrAlaAlaCysHisLeuAlaAlaValPheAlaSerHisValCy : 223 !!!!. !:!!|||:!!||||||||| !:!!||||||:!!.!!||| !|||!.!|| euHisGlyValThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCy 227502 : TGCACGGTGTCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTG : 227558 224 : sGlyGlnValAspIleLeuLysSerGlnLeuGlnAsnLeuValAspLysGluSerLeu : 242 |||||||:!!!!::!:||| !||| !||| !:!!|||:!!||| ..!:!! sGlyGlnMetGluValLeuValSerTrpLeuGlyHisLeuIleAspGlyArgAla--- 227559 : CGGTCAGATGGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGCAGAGCG--- : 227615 243 : LysIleAspGlyThrIleGluAsnArgIleAlaSerIleIleGlnSerHisValArgI : 262 ! !!:..! !|||:!:!!::!!|||||||||||||||:!! !|||||||||| AspMetSerLysThrLeuAspAspArgIleAlaSerIleValThrHisHisValArgI 227616 : GATATGAGCAAAACACTGGATGATAGAATCGCTAGCATCGTCACTCACCACGTTCGAA : 227672 263 : leLeu{As} >>>> Target Intron 1 >>>> {p}PheSerThrAsnIleGl : 270 |||||{:!} 396 bp {!}||| !.!! !||||| leLeu{As}++ ++{n}PheLeuAlaLeuIleGl 227673 : TATTG{AA}gt.........................ag{C}TTTCTGGCCCTCATAGA : 228092 271 : uLysMetLeuArgGluIleCysLeuValGluValGlyAlaSerThrLeuIleIleCys : 289 ||||! :!!!:!:!!|||..!!!!|||||| !! !!.!!!!|||:!!|||:!:||| uLysThrMetGlnGlnIleAlaPheValGluPheLeuGlyCysThrIleIleLeuCys 228093 : GAAAACCATGCAGCAAATAGCTTTCGTAGAATTTTTAGGGTGTACAATAATTCTGTGC : 228149 290 : LeuLeuGluTyrTyrCysMetThr >>>> Target Intron 2 >>>> GluTr : 299 |||:!!||||||||| !!!:||| 72 bp ||||| LeuIleGluTyrTyrIleIleThr++ ++GluTr 228150 : CTCATCGAGTATTACATCATAACGgt.........................agGAATG : 228251 300 : pSerAsnSerGluThrIleAsnIleLeuThrTyrLeuMetLeuLeuValAlaLeuSer : 318 |!:! !.!||| !! ! ! !:!!||||||! ! !||||||:!!:!!!!!!:: pAsnProLysGluLeuThrPheAlaValThrTyrSerAlaLeuLeuLeuSerPheThr 228252 : GAATCCGAAAGAGTTAACATTTGCTGTAACTTACTCAGCGTTACTTTTATCCTTTAcc : 228308 319 : PheAsnIlePheIlePheCysTyrIleGlyGluLeuLeu : 331 |||||||||||||||||||||||||||||||||:!!:!! PheAsnIlePheIlePheCysTyrIleGlyGluIleVal 228309 : ttcaatattttcatattttgttaTATAGGAGAAATTGTT : 228349 vulgar: gi|452887651|gb|AGG17942.1| 11 331 . KQ414889.1 226924 228349 + 472 M 26 78 G 1 0 M 127 381 G 0 3 M 76 228 G 1 0 M 21 63 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 33 99 5 0 2 I 0 68 3 0 2 M 34 102 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226925 228349 472 + . gene_id 5 ; sequence gi|452887651|gb|AGG17942.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226925 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226925 227679 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228175 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228175 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 228176 228177 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 228176 228247 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 228246 228247 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228248 228349 . + . KQ414889.1 exonerate:protein2genome:local exon 228248 228349 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226925 228349 472 + . alignment_id 5 ; Query gi|452887651|gb|AGG17942.1| ; Align 226925 12 78 ; Align 227003 39 381 ; Align 227387 166 228 ; Align 227615 243 63 ; Align 228077 265 99 ; Align 228248 298 102 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887651|gb|AGG17942.1| olfactory receptor 10 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 425 Query range: 161 -> 348 Target range: 300174 -> 301839 162 : ThrValAsnGluAlaAsnGluThrIleArgProLeuValTyrProGlyAsnGluIleP : 181 ||| !!!...!! !||| ! ||| !!:!||||||!.!||||||||| !!!!: | ThrTyrLysArgGluAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpP 300175 : ACTTACAAAAGGGAGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGT : 300232 182 : heValAsnCysGlnGluThrProIleTyrGluPheIlePheIleLeuHisLeuThrCy : 200 ||:!!:!! ||| !:!|||! !||||||...:::|||......||| !.. heIleAspThrGlnThrSerProThrTyrGluIleValPhePhePheHisCysPheAl 300233 : TTATCGATACACAAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGC : 300289 201 : sGlyMetValMetGlnThrIleThrThrAlaAlaCysHisLeuAlaAlaValPheAla : 219 .!.!|||:!!||| ! !.!:!:||||||||||||! ! !|||||||||:!!|||!.! aAlaMetIleMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheVal 300290 : AGCGATGATCATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTC : 300346 220 : SerHisValCysGlyGlnValAspIleLeuLysSerGlnLeuGlnAsnLeuValAspL : 239 !!!|||:!!|||||||||:!!.!.|||! !! !:!!::!|||:!!:!!||||||!!:! ThrHisIleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluA 300347 : ACTCATATCTGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGA : 300406 240 : ysGluSerLeuLysIleAspGlyThrIleGluAsnArgIleAlaSerIleIleGlnSe : 258 :! !.!! !||| !|||||| :!!! !:!:!.! !|||:!!!:!.. rgThrGlyGluLysAspAspGly------ProAspProLeuValValIleValArgAs 300407 : GGACGGGAGAGAAGGACGACGGT------CCTGATCCTTTGGTCGTTATCGTTCGAGA : 300457 259 : rHisValArgIleLeu{As} >>>> Target Intron 1 >>>> {p}PheSer : 266 !||||||!:!:!!|||{ } 140 bp { }|||:!! pHisValLysValLeu{Ar}++ ++{g}PheAla 300458 : TCACGTGAAGGTTTTA{AG}gt.........................ag{A}TTTGCA : 300621 267 : ThrAsnIleGluLysMetLeuArgGluIleCysLeuValGluValGlyAlaSerThrL : 286 ! !|||:!!|||:!!! ||||||!!:.!!||||||||||||:!! !! !||||||| LysAsnValGluGluThrLeuArgAspPheCysLeuValGluIlePheGluSerThrL 300622 : AAGAACGTTGAGGAAACTTTGCGTGACTTCTGCTTAGTGGAAATCTTCGAGTCCACGC : 300681 287 : euIleIleCysLeuLeuGluTyrTyrCysMetThr >>>> Target Intron 2 : 298 |||||:!:|||||||||||||||||||||:!!..! 970 bp euIleLeuCysLeuLeuGluTyrTyrCysLeuVal++ 300682 : TGATTTTGTGTTTGCTCGAATACTACTGTTTGGTGgt..................... : 300719 299 : >>>> GluTrpSerAsnSerGluThrIleAsnIleLeuThrTyrLeuMetLeuLeuV : 315 ||||||..!||||||!!:|||||| !!!:||||||!:!!!!! ||||||. ++GluTrpGlnAsnSerAspThrIleAlaMetLeuThrPhePheThrLeuLeuT 300720 : ....agGAATGGCAAAATAGCGACACGATCGCTATGTTGACATTTTTCACTCTGTTAA : 301738 316 : alAlaLeuSerPheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuLysLysGl : 334 .!:!!!!!!!!|||||||||||||||||||||||||||||||||:!!|||...:!!|| hrSerPheThrPheAsnIlePheIlePheCysTyrIleGlyGluIleLeuSerGluGl 301739 : CGTCGTTCACTTTCAATATATTCATATTCTGCTACATCGGCGAGATTCTTTCCGAACA : 301795 335 : nCysAsnSerIleGlyGluSerThrTyrMetIleAsnTrpTyr : 348 | !!!! !.!!..!||| :::......::: !||| nValLeuThrTyrSerArgSerPheHisPhePheSerMetTyr 301796 : GGTACTTACTTACAGTAGAagtttccatttcttttcaatGTAT : 301839 vulgar: gi|452887651|gb|AGG17942.1| 161 348 . KQ414889.1 300174 301839 + 425 M 85 255 G 2 0 M 15 45 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 33 99 5 0 2 I 0 966 3 0 2 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300175 301839 425 + . gene_id 6 ; sequence gi|452887651|gb|AGG17942.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300175 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300175 300476 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 300616 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300615 300616 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300617 300716 . + . KQ414889.1 exonerate:protein2genome:local exon 300617 300716 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300717 300718 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300717 301686 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301685 301686 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 301687 301839 . + . KQ414889.1 exonerate:protein2genome:local exon 301687 301839 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300175 301839 425 + . alignment_id 6 ; Query gi|452887651|gb|AGG17942.1| ; Align 300175 162 255 ; Align 300430 249 45 ; Align 300618 265 99 ; Align 301687 298 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887651|gb|AGG17942.1| olfactory receptor 10 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 421 Query range: 6 -> 263 Target range: 217153 -> 217921 7 : GlnLeuAspAlaAspIleGluTyrAsnLeuLysLeuThrLysTrpIleLeuLysProL : 26 :!: ::: :::|||... ::!:!!:!!! !!.!:::|||:!:|||||||||: GluTyrGluLysAsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProM 217154 : GAgtacgagaaaaatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGA : 217211 27 : euGlyValTrpSerIleValThrLysAspTyrArgPheIleSerLysLeuSerSerVa : 45 !!|||:!!||| !!! ! ! !! ! !|||! ! !!.!! |||! !!.!:! etGlyLeuTrpProAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLe 217212 : TGGGTCTTTGGCCAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACT : 217268 46 : lPheIleIleIleLeuAsnSerPheIleMetPheIleThrPheMetProCysCysVal : 64 !.!.! ! !:!!! ! !!.!!!!.|||! |||:!! |||:!:||||||! !:!! uIleAsnAlaLeuCysTyrGlyLeuIleSerPheLeu---PheValProCysSerMet 217269 : GATAAACGCCTTATGCTACGGTTTGATAAGCTTTCTA---TTCGTACCGTGCTCCATG : 217322 65 : HisMetIleTyrArgGluThrAspProAlaValLysIleIleLeuMetGlyProPheG : 84 :!!:!!.!! !..!! !|||! ! !! !|||:!:! !|||.!.||||||!!. TyrValPheLeuGluValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuI 217323 : TACGTGTTCCTCGAAGTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGA : 217382 85 : lyPheCysLeuThrAsnCysCysLysTyrTyrPheIleIlePheArgSerAsnIleIl : 103 !||||||:!!! ! ! ! !|||||||||! !:!:||| !!!.!!.! !|| lePheCysValMetAlaPheValLysTyrTyrSerLeuIleValHisLysAlaAspIl 217383 : TCTTCTGCGTGATGGCGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACAT : 217439 104 : eThrHisCysLeuGluAsnLeuLysSerAspTrpAlaArgProLysThrLysGlnAsp : 122 | !.!.|||:!!..!!..:!!:!! !!|||||| !!.! !!:! !:!!:!!||| eArgGluCysValArgArgIleGluArgAspTrpArgAsnValArgCysGluLysAsp 217440 : TCGCGAGTGCGTGAGAAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGAC : 217496 123 : ArgLeuGluMetIleLysAsnValAsnIleGlyHisAsnIleThrLysLeuCysAlaI : 142 ||| !! !|||||| !|||!.!|||.!!|||!.!!!.:!:..! !||||||.!!. ArgGluAlaMetIleValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrP 217497 : AGGGAGGCGATGATAGTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCT : 217556 143 : lePheMetPheSerGlyGlyValSerTyrHisThrIleMetProIleTrpSerGlySe : 161 !!||||||!:!|||||| ||| |||::: ! !!!:|||||| ! !|||!! hePheMetTyrSerGlyPheValPheTyrTyrIleAlaIleProIleSerValGlyAr 217557 : TCTTCATGTACAGCggtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAG : 217613 162 : rThrValAsnGlu<->AlaAsnGluThrIleArgProLeuValTyrProGlyAsnGlu : 179 !! !:!!:::||| !.!||| |||.!!! !|||||||||!:!||| !!..:!! gIleLeuSerGluAsnGlyAsnLeuThrPheIleProLeuValPheProPheThrLys 217614 : AATTCTATCGGAGAATGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAG : 217670 180 : IlePheValAsnCysGlnGluThrProIleTyrGluPheIlePheIleLeuHisLeuT : 199 !.!!:!!:!! !!:: ! ||||||! !!|||.!!:!:|||.!!|||!!.|||! TyrIleIleAspThrArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuI 217671 : TATATCATCGATACTCGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGA : 217730 200 : hrCysGlyMetValMetGlnThrIleThrThrAlaAlaCysHisLeuAlaAlaValPh : 218 !..!||| :!!|||!!. !||||||:!!||||||||| !|||||||||!.!|| leAlaGlyAlaLeuMetHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPh 217731 : TCGCTGGAGCTTTGATGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTT : 217787 219 : eAlaSerHisValCysGlyGlnValAspIleLeuLysSerGlnLeuGlnAsnLeuVal : 237 |||| !|||!.!|||||||||:!!!!::!:|||! !!:! !||||||:!!|||:!! eAlaValHisAlaCysGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIle 217788 : CGCGGTTCATGCCTGCGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATC : 217844 238 : AspLysGluSerLeuLysIleAspGlyThrIleGluAsnArgIleAlaSerIleIleG : 257 ||| ..!:!! ! !!:..!! !|||:!:!!:..!|||||||||||||||:!!. AspGlyArgAla---AspMetSerAspThrValAspGlyArgIleAlaSerIleValS 217845 : GACGGTAGAGCG---GATATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCA : 217901 258 : lnSerHisValArgIleLeu : 263 ....!||||||||||||||| erGlnHisValArgIleLeu 217902 : GTCAACACGTTCGGATATTA : 217921 vulgar: gi|452887651|gb|AGG17942.1| 6 263 . KQ414889.1 217153 217921 + 421 M 51 153 G 1 0 M 107 321 G 0 3 M 76 228 G 1 0 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217154 217921 421 + . gene_id 7 ; sequence gi|452887651|gb|AGG17942.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217154 217921 . + . KQ414889.1 exonerate:protein2genome:local exon 217154 217921 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 217154 217921 421 + . alignment_id 7 ; Query gi|452887651|gb|AGG17942.1| ; Align 217154 7 153 ; Align 217307 59 321 ; Align 217631 166 228 ; Align 217859 243 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887651|gb|AGG17942.1| olfactory receptor 10 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 393 Query range: 9 -> 265 Target range: 221366 -> 222131 10 : AlaAspIleGluTyrAsnLeuLysLeuThrLysTrpIleLeuLysProLeuGlyValT : 29 .!!:!!:!::!!! !:!:!!:!!|||!:!:::|||||||||||||||:!!||||||| ThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleGlyValT 221367 : ACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTT : 221424 30 : rpSerIleValThrLysAspTyrArgPheIleSerLysLeuSerSerValPheIleIl : 48 || !!! ! !.!!!!. !! !! ! ! !!! ! |||! !!!!:!!.!.! !:! rpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLeuIleAsnVa 221425 : GGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAACGT : 221481 49 : eIleLeuAsnSerPheIleMetPheIleThrPheMetProCysCysValHisMetIle : 67 !:!!! ! !!|||.!.|||! !|||:!! !!.:!:|||||| !!:!!:!!:!!||| lValCysTyrSerLeuIleThrPheLeu---LeuValProCysSerLeuTyrValIle 221482 : CGTTTGTTACAGCCTGATCACGTTCCTC---TTGGTACCTTGCAGCCTTTACGTGATC : 221535 68 : TyrArgGluThrAspProAlaValLysIleIleLeuMetGlyProPheGlyPheCysL : 87 !..!! ! !||| ! ! !!:!|||! !|||:!!||||||!!..!!||||||: LeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysV 221536 : CTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCG : 221595 88 : euThrAsnCysCysLysTyrTyrPheIleIlePheArgSerAsnIleIleThrHisCy : 106 !!! ! ! ! ||||||:!!.!.:!:|||.!! !..!||| !||| !.!.|| alMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCy 221596 : TGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTG : 221652 107 : sLeuGluAsnLeuLysSerAspTrpAlaArgProLysThrLysGlnAspArgLeuGlu : 125 |:!!|||..!:!!:!!!!!|||||| !!.! !! !...:!!|||!:! ! ! sIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLysAspIle 221653 : CATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAGGATATA : 221709 126 : MetIleLysAsnValAsnIleGlyHisAsnIleThrLysLeuCysAlaIlePheMetP : 145 ||||||:!!|||!.!! !.!!|||......:!:! !! !:!!|||.!!.!!||||||! MetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheMetT 221710 : ATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGT : 221769 146 : heSerGlyGlyValSerTyrHisThrIleMetProIleTrpSerGlySer<->ThrVa : 163 :!|||||| ||| |||::: ! !!!:|||.!! ! !|||!.! !!!. yrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIleProAl 221770 : ACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGC : 221826 164 : lAsnGluAlaAsnGluThrIleArgProLeuValTyrProGlyAsnGluIlePheVal : 182 !.!.!!:...||| |||... |||:!!|||!:!||| !:::..!.!!.!!||| aGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPheIleVal 221827 : GCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTC : 221883 183 : AsnCysGlnGluThrProIleTyrGluPheIlePheIleLeuHisLeuThrCysGlyM : 202 :!! !!:! ! !:!|||:!! !!|||.!!:!:||| |||!!.:!!! !...||| AspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyA 221884 : GATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTG : 221943 203 : etValMetGlnThrIleThrThrAlaAlaCysHisLeuAlaAlaValPheAlaSerHi : 221 :!!|||!!.!:!||||||:!!||||||||| !|||!.!|||:!!|||||| !|| laLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaValHi 221944 : CTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCA : 222000 222 : sValCysGlyGlnValAspIleLeuLysSerGlnLeuGlnAsnLeuValAspLysGlu : 240 |!.!|||||||||:!!.!.:!:|||! !||| !|||:!!:!!|||:!!:!! ..! sAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsnGlyArg 222001 : CGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGCCGG : 222057 241 : SerLeuLysIleAspGlyThrIleGluAsnArgIleAlaSerIleIleGlnSerHisV : 260 :!! ! !!: !..!!.!:!:!!:!..|||||||||!.!|||:!:.!...!|||| Ala---AspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnHisV 222058 : GCG---GATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAACACG : 222114 261 : alArgIleLeuAspPhe : 265 |||||||||||.!.!:! alArgIleLeuGlnTyr 222115 : TTCGAATATTGCAGTAT : 222131 vulgar: gi|452887651|gb|AGG17942.1| 9 265 . KQ414889.1 221366 222131 + 393 M 48 144 G 1 0 M 103 309 G 0 3 M 80 240 G 1 0 M 23 69 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221367 222131 393 + . gene_id 8 ; sequence gi|452887651|gb|AGG17942.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221367 222131 . + . KQ414889.1 exonerate:protein2genome:local exon 221367 222131 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 221367 222131 393 + . alignment_id 8 ; Query gi|452887651|gb|AGG17942.1| ; Align 221367 10 144 ; Align 221511 59 309 ; Align 221823 162 240 ; Align 222063 243 69 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887651|gb|AGG17942.1| olfactory receptor 10 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 346 Query range: 0 -> 263 Target range: 212833 -> 213619 1 : MetSerThrGluAsnThrGlnLeuAspAlaAspIleGluTyrAsnLeuLysLeuThrL : 20 :!!..!..!|||:!! ! ! !!!: ! :::... :::::: !! !!.!: LeuGlnValGluAspCysThrTyrGluLysArgValAsnLeuSerIleProTrpAsnA 212834 : TTGCAGGTCGAAGACTGTACCTACGAGAAACGtgtaaatttaagtatacCGTGGAATC : 212891 21 : ysTrpIleLeuLysProLeuGlyValTrpSerIleValThrLysAspTyrArgPheIl : 39 ::|||:!!||||||||| !|||:!!||| !! ! !:!! ! ! !! ! !.!! rgTrpLeuLeuLysProThrGlyLeuTrpProAspLysSerTyrValSerProIleGl 212892 : GTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGATCGA : 212948 40 : eSerLysLeuSerSerValPheIleIleIleLeuAsnSerPheIleMetPheIleThr : 58 !.!!!.:!!:!! !!:!! !!! !! !:!!! ! !!.!!!!.||| !:!:!!..! uLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLeuVal 212949 : GAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCTTGTA : 213005 59 : PheMetProCysCysValHisMetIleTyrArgGluThrAspProAlaValLysIleI : 78 !!:|||||| !!:!!:!!:!!.!! ! !! ! ::: :::||| ---IleProCysSerLeuTyrValPheLeuAspValGluAsnIlePheLysGluIleG 213006 : ---ATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaagagaTCG : 213062 79 : leLeuMetGlyProPheGlyPheCysLeuThrAsnCysCysLysTyrTyrPheIleIl : 97 !|||.!.||| !|||!.!||||||:!!.!! !! ||||||:!!! :!:|| luLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuIl 213063 : AATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGAT : 213119 98 : ePheArgSerAsnIleIleThrHisCysLeuGluAsnLeuLysSerAspTrpAlaArg : 116 |.!!!.!.!!:!! !||| ! |||:!!|||:!!:!!|||! !|||||| !!.! eLeuHisGlyAspAspIleArgThrCysValGluHisMetLysTyrAspTrpLysAsn 213120 : ACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAAT : 213176 117 : ProLysThrLysGlnAspArgLeuGluMetIleLysAsnValAsnIleGlyHisAsnI : 136 !! ! !:!!:!!|||!:! ! ||| !|||!.!!:!.!!||| ! !..| IleThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArgI 213177 : ATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGGA : 213236 137 : leThrLysLeuCysAlaIlePheMetPheSerGlyGlyValSerTyrHisThrIleMe : 155 ||..!! !:!!||||||.!!||||||!:!!!!||| !..!! !||| ! !:!!:! leValThrIleCysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuValVa 213237 : TAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCGT : 213293 156 : tProIleTrpSerGlySerThrValAsnGlu<->AlaAsnGluThrIleArgProLeu : 173 :|||||| ! :!!! !!.!! !||| ||| !|||! !|||.!!|||! !:!! lProIleSerAlaAspLysMetValAlaGluAspLeuAsnValThrPheArgGlnMet 213294 : ACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAATG : 213350 174 : ValTyrProGlyAsnGluIlePheValAsnCysGlnGluThrProIleTyrGluPheI : 193 ||| !|||! !:::..!.!!.!!|||:!! !!:! ! !:!|||:!: !!|||.!.. ValValProValSerArgPheIleValAspValArgTyrSerProValAsnGluIleP 213351 : GTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATAT : 213410 194 : lePheIleLeuHisLeuThrCysGlyMetValMetGlnThrIleThrThrAlaAlaCy : 212 !!|||:!::!!!!.:!!! !..!|||:!::!!!!:!!..!!|||.!!..!!.!||||| hePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAlaCy 213411 : TCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTTG : 213467 213 : sHisLeuAlaAlaValPheAlaSerHisValCysGlyGlnValAspIleLeuLysSer : 231 | !|||||||||||||||||| !|||!.!|||||||||:!!! !||||||! !||| sSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSer 213468 : TAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAGC : 213524 232 : GlnLeuGlnAsnLeuValAspLysGluSerLeuLysIleAspGlyThrIleGluAsnA : 251 !|||:!!:!!|||:!!||| ..!..! ! !!:..! !!.!:!:!!::!!| TrpLeuGluHisLeuIleAspGlyArgGlu---AspMetSerLysAsnValAspAspA 213525 : TGGCTGGAACATTTGATAGACGGTAGAGAG---GATATGAGCAAGAATGTGGACGACA : 213581 252 : rgIleAlaSerIleIleGlnSerHisValArgIleLeu : 263 |||||||| !|||:!:.!...!||||||||||||||| rgIleAlaValIleValAsnGlnHisValArgIleLeu 213582 : GAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTG : 213619 vulgar: gi|452887651|gb|AGG17942.1| 0 263 . KQ414889.1 212833 213619 + 346 M 58 174 G 1 0 M 106 318 G 0 3 M 76 228 G 1 0 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212834 213619 346 + . gene_id 9 ; sequence gi|452887651|gb|AGG17942.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212834 213619 . + . KQ414889.1 exonerate:protein2genome:local exon 212834 213619 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 212834 213619 346 + . alignment_id 9 ; Query gi|452887651|gb|AGG17942.1| ; Align 212834 1 174 ; Align 213008 60 318 ; Align 213329 166 228 ; Align 213557 243 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887651|gb|AGG17942.1| olfactory receptor 10 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 322 Query range: 12 -> 334 Target range: 262846 -> 264648 13 : GluTyrAsnLeuLysLeuThrLysTrpIleLeuLysProLeuGlyValTrpSerIleV : 32 !!:|||!:!|||:!!:!!!.!::!|||:!:|||||||||:!!|||!.!||| !!:!: AspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuS 262847 : GACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGT : 262904 33 : alThrLysAspTyrArgPheIleSerLysLeuSerSerValPheIleIleIleLeuAs : 51 !.!!..! !! ||| !!:..!::!:!!! !!!! !!.!!:!!|||:!!:!! erAlaSerIleSerArg---MetGluArgIleIleTrpPheLeuLeuIleValValCy 262905 : CCGCCTCGATCTCAAGA---ATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTG : 262958 52 : nSerPheIleMetPheIleThrPheMetProCysCysValHisMetIleTyrArgGlu : 70 !! !! !:!!!!:.!. !||| !!!!:|||! ! :!!|||!!::!! ..!! sTyrCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAla 262959 : TTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCC : 263015 71 : ThrAspProAlaValLysIleIleLeuMetGlyProPheGlyPheCysLeuThrAsnC : 90 !:!! ! !:!!|||:!: :!!:!:||||||.!!||| !! !!!..!..! GluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyM 263016 : GAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTA : 263075 91 : ysCysLysTyrTyrPheIleIlePheArgSerAsnIleIleThrHisCysLeuGluAs : 109 !!!.||| !!:::!::!:.!!!.!|||!!. !||| ! !|||:!!:!!:! etIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHi 263076 : TGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACA : 263132 110 : nLeuLysSerAspTrpAlaArgProLysThrLysGlnAspArgLeuGluMetIleLys : 128 !:!!:!!..!||||||..!! ! !! ! ! !:!!|||!:!! ! |||:!:||| sValGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLys 263133 : CGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAG : 263189 129 : AsnValAsnIleGlyHisAsnIleThrLysLeuCysAlaIlePheMetPheSerGlyG : 148 |||!.!!!. !|||!.! !!:!:.!! ! !||||||||||||||| ..! !. AsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMet---GlnThrS 263190 : AACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATG---CAAACGA : 263246 149 : lyValSerTyrHisThrIleMetProIleTrpSerGlySerThrValAsnGluAlaAs : 167 !!:!!! !! ! ! !:!!:!: !! !::!!! !..!..!:!!.!.!!:!.!|| erIleMetCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAs 263247 : GCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAA : 263303 168 : nGluThr<-><->IleArgProLeuValTyrProGlyAsnGluIlePheValAsnCys : 184 ||||||| :!!||| !||| !! !|||! ! !!:!! .!!:!! ! nGluThrArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProVal 263304 : CGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTC : 263360 185 : GlnGluThrProIleTyrGluPheIlePheIleLeuHisLeuThrCysGlyMetValM : 204 .!. !!.!|||! !!|||.!!.!!.!! ! !!!.!!! !! |||.!.:!!: AspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleV 263361 : GACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCG : 263420 205 : etGlnThrIleThrThrAlaAlaCysHisLeuAlaAlaValPheAlaSerHisValCy : 223 !: .!!! !|||..!!.!|||! ! !:!!.!!||||||||||||.!!|||!.!|| alThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCy 263421 : TCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTG : 263477 224 : sGlyGlnValAspIleLeuLysSerGlnLeuGlnAsnLeuValAspLysGluSerLeu : 242 |||||||:!!:!!:!:|||! !||| !:!! !.!.!!!|||:!!:!!...!!! ! sGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAsp 263478 : CGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGAT : 263534 243 : LysIleAspGlyThrIleGluAsnArgIleAlaSerIleIleGlnSerHisValArgI : 262 :!!! ! ! ..! ! ! !.!..!|||!.! !|||:!!:!! !|||:!!|||: GluAsnLysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgV 263535 : GAGAATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAG : 263594 263 : leLeu{As} >>>> Target Intron 1 >>>> {p}PheSerThrAsnIleGl : 270 !!|||{..} 839 bp {!}!:!!!!|||||| !!! alLeu{Se}++ +-{r}TyrCysThrAsnCysAs 263595 : TTCTG{AG}gt.........................at{C}TATTGCACAAATTGTGA : 264457 271 : uLysMetLeuArgGluIleCysLeuValGluValGlyAlaSerThrLeuIleIleCys : 289 :||| ... ||| ! :!!..! !..!! !:!!.!!:!!!! pLysAsp---AsnPheCysLeuLeuGlnCysLeuSerArgAspIleIlePheVal*** 264458 : TAAagac---aatttttgtttacttcAGTGTTTGTCCAGGGATATAATATTTGTATGA : 264511 290 : LeuLeuGluTyrTyrCysMetThrGluTrpSerAsnSerGluThrIleAsnIleLeuT : 309 !:!! ! ! !! !.!. !||||||..!!:! ::: |||::: !| AsnIleThrIleAspValPheGlnGluTrpGluSerHisAspIleGlnAsnLeuThrT 264512 : AATATAACAATTGACGTTTTTCAGGAATGGGAAAGTCAtgatattcaaaatttgacTA : 264571 310 : hrTyrLeuMetLeuLeuValAlaLeuSerPheAsnIlePheIlePheCysTyrIleGl : 328 |||||!!!|||:!!|||:!!:!!:!!!!! !|||||||||:!!.!.||||||||||| hrTyrPheMetIleLeuIleSerMetCysGlyAsnIlePheLeuMetCysTyrIleGl 264572 : CATATTTCATGATACTGATATCAATGTGCGGCAACATTTTTCTAATGTGTTATATCGG : 264628 329 : yGluLeuLeuLysLysGln : 334 ||||:!!|||! :!!||| yGluIleLeuThrGluGln 264629 : CGAGATATTGACTGAGcag : 264648 vulgar: gi|452887651|gb|AGG17942.1| 12 334 . KQ414889.1 262846 264648 + 322 M 25 75 G 1 0 M 106 318 G 1 0 M 24 72 G 0 6 M 94 282 S 0 2 5 0 2 I 0 835 3 0 2 S 1 1 M 8 24 G 1 0 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262847 264648 322 + . gene_id 10 ; sequence gi|452887651|gb|AGG17942.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262847 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262847 263601 . + . insertions 6 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 264440 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 264439 264440 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 264441 264648 . + . KQ414889.1 exonerate:protein2genome:local exon 264441 264648 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 262847 264648 322 + . alignment_id 10 ; Query gi|452887651|gb|AGG17942.1| ; Align 262847 13 75 ; Align 262922 39 318 ; Align 263240 146 72 ; Align 263318 170 282 ; Align 264442 265 24 ; Align 264466 274 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887651|gb|AGG17942.1| olfactory receptor 10 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 289 Query range: 10 -> 193 Target range: 294678 -> 295227 11 : AspIleGluTyrAsnLeuLysLeuThrLysTrpIleLeuLysProLeuGlyValTrpS : 30 |||:!:! ! !!!:!||||||! ! !::! !!:!:|||||||||:!!|||:!!||| AspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyLeuTrpP 294679 : GACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTCTTTGGC : 294736 31 : erIleValThrLysAspTyrArgPheIleSerLysLeuSerSerValPheIleIleIl : 49 !!:!!:!! !!.. !! !!!! :!:!:!|||:!! !|||:!!.!!:!:||| roLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLeuIleAl 294737 : CACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCTGATCGC : 294793 50 : eLeuAsnSerPheIleMetPheIleThrPheMetProCysCysValHisMetIleTyr : 68 ! ! !!!!!!.! !:!:.!..!!..!!!.:!!|||||| ! ! ! :!!!:! aTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCysValPhe 294794 : GTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGTGTATTC : 294850 69 : ArgGluThrAspProAlaValLysIleIleLeuMetGlyProPheGlyPheCysLeuT : 88 !.!! ::: :::|||!!:! !|||:!!|||||| ! !!:!! !:!! HisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrSerMetL 294851 : CACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACTCTATGC : 294910 89 : hrAsnCysCysLysTyrTyrPheIleIlePheArgSerAsnIleIleThrHisCysLe : 107 !::! !!:!||| !! !:!!:!!!!.!:!!!! ! .!!! !||||||:! euSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHisCysIl 294911 : TCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCATTGCAT : 294967 108 : uGluAsnLeuLysSerAspTrpAlaArgProLysThrLysGlnAspArgLeuGluMet : 126 !|||:!!:!!:!!!:!|||||| ! ! ! ! !.! !:!! !!||| ! ||| eGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAlaIleMet 294968 : CGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCGATCATG : 295024 127 : IleLysAsnValAsnIleGlyHisAsnIleThrLysLeuCysAlaIlePheMetPheS : 146 |||||||||!.!! :!! !!!.!..!!:||| !! !.!!|||.!.!!:!:!| IleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleIleTyrS 295025 : ATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAATCTACA : 295084 147 : erGlyGlyValSerTyrHisThrIleMetProIleTrpSerGlySerThrValAsnGl : 165 ||..!!.!||||||||||||.!!|||:::|||...:::|||...::: !! !|||:! erSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGluAsnLy 295085 : GTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGAGAACAA : 295141 166 : uAlaAsnGluThrIleArgProLeuValTyrProGlyAsnGluIlePheValAsnCys : 184 ! !|||.!.||||||||| !!||| ! !|||||| !!|||:!!||||||:!!..! sLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheValAspAla 295142 : GAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTAGACGCT : 295198 185 : GlnGluThrProIleTyrGluPheIle : 193 ! ...!:!|||! !||||||.!!||| TyrSerSerProThrTyrGluIleIle 295199 : TATTCCAGTCCTACCTACGAGATCATA : 295227 vulgar: gi|452887651|gb|AGG17942.1| 10 193 . KQ414889.1 294678 295227 + 289 M 183 549 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294679 295227 289 + . gene_id 11 ; sequence gi|452887651|gb|AGG17942.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294679 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294679 295227 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294679 295227 289 + . alignment_id 11 ; Query gi|452887651|gb|AGG17942.1| ; Align 294679 11 549 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887651|gb|AGG17942.1| olfactory receptor 10 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 284 Query range: 4 -> 263 Target range: 266610 -> 267387 5 : AsnThrGlnLeuAspAlaAspIleGluTyrAsnLeuLysLeuThrLysTrpIleLeuL : 24 .!..!!.!.|||:!!::! ! !!!:|||!:!|||:!!|||!.!::!|||.!!|||| GluAlaAsnLeuAsnSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuL 266611 : GAAGCGAATCTAAACAGTCTGAGCGATTACAGCCTGCAATTGAATCGATGGTTCCTGA : 266668 25 : ysProLeuGlyValTrpSerIleValThrLysAspTyrArgPheIleSerLysLeuSe : 43 |||||:!!|||!.!||| !! :!!:!! ! !!:!.!! ! !!! :!!|| ysProIleGlyAlaTrpProProLeuSerLeuThrSerLysLeuGluArgIleValSe 266669 : AACCTATAGGCGCTTGGCCGCCGTTGTCACTCACATCTAAACTCGAACGAATCGTTTC : 266725 44 : rSerValPheIleIleIleLeuAsnSerPheIleMetPheIleThrPheMetProCys : 62 |! !!.!!!.|||:!!|||! ! !!!!!! !|||:!!||| ||| ! !!:|||||| rTyrAlaLeuIleValIleCysTyrCysSerIleLeuPhe---ThrValIleProCys 266726 : CTACGCTTTGATCGTCATCTGCTACTGCTCCATACTGTTC---ACCGTAATCCCTTGC : 266779 63 : CysValHisMetIleTyrArgGluThrAspProAlaValLysIleIleLeuMetGlyP : 82 ! !!|||:!::!! ..!!!: !..! ! !..!|||:!:! :!!.!.|||| LeuPheHisLeuValLeuGluAspGluSerIleArgThrLysValLysValPheGlyP 266780 : TTGTTTCATCTCGTTCTGGAGGACGAGAGTATCCGTACGAAAGTGAAGGTGTTCGGTC : 266839 83 : roPheGlyPheCysLeuThrAsnCysCysLysTyrTyrPheIleIlePheArgSerAs : 101 ||.!..!! !!! !!!..!... ! !!!.||| ! :!::!:.!.||||||!! roLeuSerHisTrpPheValGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLy 266840 : CTCTGAGCCATTGGTTCGTCGGAGGAATTAACTACACCACACTGTTGCTACGCAGCAA : 266896 102 : nIleIleThrHisCysLeuGluAsnLeuLysSerAspTrpAlaArgProLysThrLys : 120 . ||| ! !|||:!!|||:!!:!!:!!!!!|||||| !! ! !! ! ! ! sGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgPro 266897 : AGAGATACGCGGTTGCGTAGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCG : 266953 121 : GlnAspArgLeuGluMetIleLysAsnValAsnIleGlyHisAsnIleThrLysLeuC : 140 :!!|||!:!! !! !|||:!:||||||!.!!..||||||!.! !!|||.!!! !!!!| GluAspLysGlnValMetLeuLysAsnAlaArgIleGlyArgTyrIleAlaIlePheC 266954 : GAGGACAAGCAGGTGATGTTGAAGAACGCGAGGATCGGTCGTTACATTGCTATATTCT : 267013 141 : ysAlaIlePheMetPheSerGlyGlyValSerTyrHisThrIleMetProIleTrpSe : 159 ||||| |||||| !!!|||! !:!!.!!||| !..!|||! ! !!.!! ! ysAlaAlaPheMetGlnCysGlyValLeuGlyTyrCysValIleThrAlaPheThrMe 267014 : GCGCGGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGTGATAACGGCGTTCACTAT : 267070 160 : rGlySerThr<->ValAsnGluAlaAsnGluThrIleArgProLeuValTyrProGly : 177 ! !!!!..! |||..!.!.! !!.!..!! !:!!!.!! !||| !! ! !!! ! tGlnThrValGluValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaVal 267071 : GCAGACCGTGGAAGTCGGTAACGAGACTAGGATCGTACATCTGTTGCCCTGTGCAGTT : 267127 178 : AsnGluIlePheValAsnCysGlnGluThrProIleTyrGluPheIlePheIleLeuH : 197 !!:!!! .!.:!! !.!. !:!|||! !!|||.!!:!!.!!:!!! !! TyrLysLysMetIleAlaValAspThrSerProThrAsnGluIleValLeuValSerG 267128 : TACAAGAAGATGATCGCAGTTGATACCAGCCCGACGAACGAGATTGTCCTTGTTTCAC : 267187 198 : isLeuThrCysGlyMetValMetGlnThrIleThrThrAlaAlaCysHisLeuAlaAl : 216 !.!!!..!! |||.!.:!!:!!.!.:!!! !..!..!!.!|||! ! !|||||||| lnPheValSerGlyPheIleValAsnSerSerValValGlyAlaPheSerLeuAlaAl 267188 : AGTTCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGC : 267244 217 : aValPheAlaSerHisValCysGlyGlnValAspIleLeuLysSerGlnLeuGlnAsn : 235 ||||||||||:!!|||!.!|||||||||:!!..!:!:|||! !! ! !:!!:!!.!. aValPheAlaAlaHisAlaCysGlyGlnLeuSerValLeuMetMetTrpIleLysGlu 267245 : CGTGTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTGATGATGTGGATCAAGGAG : 267301 236 : LeuValAspLysGluSerLeuLysIleAspGlyThrIleGluAsnArgIleAlaSerI : 255 !!!|||:!!::!...!!! !!..! ! ! ..!..! ! :!!!:!|||!.! !: PheValAsnArgSerArgAspSerAsnLysAsnValCysPheAspLysIleGlyValV 267302 : TTTGTGAACCGATCCAGAGATAGCAATAAGAACGTTTGCTTCGATAAGATTGGCGTGG : 267361 256 : leIleGlnSerHisValArgIleLeu : 263 !!:!!:!! !|||:!!|||:!!||| alValGluHisHisLeuArgValLeu 267362 : TCGTTGAACATCATCTGAGAGTTTTG : 267387 vulgar: gi|452887651|gb|AGG17942.1| 4 263 . KQ414889.1 266610 267387 + 284 M 52 156 G 1 0 M 105 315 G 0 3 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266611 267387 284 + . gene_id 12 ; sequence gi|452887651|gb|AGG17942.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266611 267387 . + . KQ414889.1 exonerate:protein2genome:local exon 266611 267387 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 266611 267387 284 + . alignment_id 12 ; Query gi|452887651|gb|AGG17942.1| ; Align 266611 5 156 ; Align 266767 58 315 ; Align 267085 163 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887651|gb|AGG17942.1| olfactory receptor 10 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 278 Query range: 4 -> 263 Target range: 274356 -> 275133 5 : AsnThrGlnLeuAspAlaAspIleGluTyrAsnLeuLysLeuThrLysTrpIleLeuL : 24 !.!.!!.!.!!!|||::! !! !!!:|||!:!|||:!!|||!.!::!|||.!!|||| ThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuL 274357 : ACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGA : 274414 25 : ysProLeuGlyValTrpSerIleValThrLysAspTyrArgPheIleSerLysLeuSe : 43 |||||:!!|||!.!||| !!:!!!.!:!! ! !:!||| ! !!! ||||| ysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLeuSe 274415 : AGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTC : 274471 44 : rSerValPheIleIleIleLeuAsnSerPheIleMetPheIleThrPheMetProCys : 62 | !:::...|||...::: !!!!!||||||:!: !||| !!!!:||| !! rHisLeuLeuIlePheLeuCysTyrCysPheIleLeu---SerThrValIleProSer 274472 : ACACCttttaatcttcctttgctACTGCTTCATACTC---TCCACCGTTATCCCAAGC : 274525 63 : CysValHisMetIleTyrArgGluThrAspProAlaValLysIleIleLeuMetGlyP : 82 !!|||!!:||| !!!: !..!! ! !:!!|||:!:! |||:!:|||| IlePheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyP 274526 : ATATTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTC : 274585 83 : roPheGlyPheCysLeuThrAsnCysCysLysTyrTyrPheIleIlePheArgSerAs : 101 ||.!!||| !!! !!!! !... ! !!!.||| ! :!::!:.!.||||||!! roLeuGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLy 274586 : CTCTCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAA : 274642 102 : nIleIleThrHisCysLeuGluAsnLeuLysSerAspTrpAlaArgProLysThrLys : 120 . ||| ! !|||:!!|||:!!:!!:!!!!!|||||| !! ! !! ! ! ! sGluIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgPro 274643 : AGAGATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCG : 274699 121 : GlnAspArgLeuGluMetIleLysAsnValAsnIleGlyHisAsnIleThrLysLeuC : 140 :!!|||!:!! !! !|||:!:||||||!.!!!.||||||!.! !!:!!.!!! !!!| GluAspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheC 274700 : GAGGATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCT : 274759 141 : ysAlaIlePheMetPheSerGlyGlyValSerTyrHisThrIleMetProIleTrpSe : 159 ||||| |||||| !!!|||! !:!!!!!||| !..!|||! !!.!! ! ysAlaAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMe 274760 : GTGCGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTAT : 274816 160 : rGlySerThr<->ValAsnGluAlaAsnGluThrIleArgProLeuValTyrProGly : 177 ! !!!!..! |||....!.! !!.!..!|||:!:!.! !||| !! ! !!.! tGlnThrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAla 274817 : GCAGACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCT : 274873 178 : AsnGluIlePheValAsnCysGlnGluThrProIleTyrGluPheIlePheIleLeuH : 197 !!:!!! .!!||| .!. !!:!|||! !!|||.!!:!!.!! !! !! TyrLysLysIleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerG 274874 : TACAAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGC : 274933 198 : isLeuThrCysGlyMetValMetGlnThrIleThrThrAlaAlaCysHisLeuAlaAl : 216 !.!!!..!! |||.!.:!!:!!.!.:!!! !.!!..!!.!|||! ! !|||||||| lnPheValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAl 274934 : AATTCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGC : 274990 217 : aValPheAlaSerHisValCysGlyGlnValAspIleLeuLysSerGlnLeuGlnAsn : 235 ||||||||||:!!|||!.!! !||||||:!!..!:!:|||! !! ! !:!! .!. aValPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGlu 274991 : CGTGTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAG : 275047 236 : LeuValAspLysGluSerLeuLysIleAspGlyThrIleGluAsnArgIleAlaSerI : 255 !!!|||:!! ! ...!!! ::: ...... ::!..!|||!.! !: PheValAsnHisSerArgAspGlnAsnLysAsnValTyrPheSerGluIleGlyValV 275048 : TTTGTGAATCATTCCAGGGAtcagaataaaaatgtttatttcagCGAGATCGGCGTGG : 275107 256 : leIleGlnSerHisValArgIleLeu : 263 !!:!!:!! !|||:!!|||:!!||| alValGluHisHisLeuArgValLeu 275108 : TTGTCGAACATCATCTGAGGGTACTC : 275133 vulgar: gi|452887651|gb|AGG17942.1| 4 263 . KQ414889.1 274356 275133 + 278 M 51 153 G 1 0 M 106 318 G 0 3 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274357 275133 278 + . gene_id 13 ; sequence gi|452887651|gb|AGG17942.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274357 275133 . + . KQ414889.1 exonerate:protein2genome:local exon 274357 275133 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 274357 275133 278 + . alignment_id 13 ; Query gi|452887651|gb|AGG17942.1| ; Align 274357 5 153 ; Align 274510 57 318 ; Align 274831 163 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887651|gb|AGG17942.1| olfactory receptor 10 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 268 Query range: 4 -> 263 Target range: 256625 -> 257402 5 : AsnThrGlnLeuAspAlaAspIleGluTyrAsnLeuLysLeuThrLysTrpIleLeuL : 24 !!.|||.!.!!! ! ::! !!! !!!:|||!:!|||:!!|||!.!::!|||.!!|||| LysThrAsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuL 256626 : AAGACGAATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGA : 256683 25 : ysProLeuGlyValTrpSerIleValThrLysAspTyrArgPheIleSerLysLeuSe : 43 |||||:!!|||!.!||| !! ! !:!!... ! ! !.!! !!!!.:!!|| ysProIleGlyAlaTrpProProSerSerSerThrThrThrLeuGluArgAsnValSe 256684 : AACCTATAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTC : 256740 44 : rSerValPheIleIleIleLeuAsnSerPheIleMetPheIleThrPheMetProCys : 62 |! !|||!!.! !|||:!!! ! !!.!!! !|||:!!||| |||!!.!!:|||||| rIleValLeuAsnIleValCysTyrGlySerIleLeuPhe---ThrLeuIleProCys 256741 : GATCGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTC---ACCTTGATACCCTGT : 256794 63 : CysValHisMetIleTyrArgGluThrAspProAlaValLysIleIleLeuMetGlyP : 82 ! :!!|||:!:.!! ! !!!: !..! ! :::|||::: ...|||| LeuLeuHisValPheLeuAspAspAspSerPheTyrMetLysValLysAsnPheGlyP 256795 : TTGCTCCATGTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtC : 256854 83 : roPheGlyPheCysLeuThrAsnCysCysLysTyrTyrPheIleIlePheArgSerAs : 101 ||.!..!! !!! :!!! !!:!|||..!!!.||| !!.:!::!:!!.!:!.!!!! roMetSerHisTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLy 256855 : CTATGAGCCATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAA : 256911 102 : nIleIleThrHisCysLeuGluAsnLeuLysSerAspTrpAlaArgProLysThrLys : 120 . !||| !:!!|||:!!|||:!!:!!:!!!!!|||||| !! ! !!:!! !:!! sAspIleArgTyrCysValGluHisIleGluThrAspTrpArgMetValArgArgGlu 256912 : AGACATACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAG : 256968 121 : GlnAspArgLeuGluMetIleLysAsnValAsnIleGlyHisAsnIleThrLysLeuC : 140 :!!|||!:!! !! !|||!!:||||||!.!!...!!|||!.! !!:!:.!!! !!!!| LysAspGlnGlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheC 256969 : AAGGATCAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTT : 257028 141 : ysAlaIlePheMetPheSerGlyGlyValSerTyrHisThrIleMetProIleTrpSe : 159 ||||| !.!!||| |||||| ::: ..! ! !!:!: !! ysAlaAlaIleMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAsnTh 257029 : GCGCAGCTATCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACAC : 257085 160 : rGlySerThr<->ValAsnGluAlaAsnGluThrIleArgProLeuValTyrProGly : 177 !! !! !! ! |||....!.! !!.. !! !:!:||| !||| ! ! !!! ! rGluIleIleHisValGlyAsnGluThrThrIleValArgValLeuProValThrVal 257086 : GGAGATAATTCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTG : 257142 178 : AsnGluIlePheValAsnCysGlnGluThrProIleTyrGluPheIlePheIleLeuH : 197 !!:!!! .!.:!!||| !.!.:!!!:!|||! !!|||.!!:!: !!.!!:!!! TyrLysLysLeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheMetG 257143 : TACAAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGC : 257202 198 : isLeuThrCysGlyMetValMetGlnThrIleThrThrAlaAlaCysHisLeuAlaAl : 216 !. ! !! ..!!!::!! ! |||! !|||..!::! !! ! !|||||||| lnThrTrpSerSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAlaAl 257203 : AAACTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGC : 257259 217 : aValPheAlaSerHisValCysGlyGlnValAspIleLeuLysSerGlnLeuGlnAsn : 235 ||||||||||!!!|||!.!! !||||||:!! !:!:|||! !||| !:!! !.!. aValPheAlaThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGlu 257260 : TGTTTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAG : 257316 236 : LeuValAspLysGluSerLeuLysIleAspGlyThrIleGluAsnArgIleAlaSerI : 255 !!!|||:!!:!!..!!!! !::: !!.!:!|||!.! !| PheValAsnGluSerArgAsnArgGluLysThrPheProPheLysGlnIleGlyValI 257317 : TTTGTGAATGAGTCGAGGAATCGggagaaaacgtttcctttCAAGCAAATAGGCGTGA : 257376 256 : leIleGlnSerHisValArgIleLeu : 263 ||:!::!! !|||:!!|||:!:||| leValGluHisHisLeuArgValLeu 257377 : TTGTGGAGCATCATTTAAGAGTGCTG : 257402 vulgar: gi|452887651|gb|AGG17942.1| 4 263 . KQ414889.1 256625 257402 + 268 M 52 156 G 1 0 M 105 315 G 0 3 M 101 303 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256626 257402 268 + . gene_id 14 ; sequence gi|452887651|gb|AGG17942.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256626 257402 . + . KQ414889.1 exonerate:protein2genome:local exon 256626 257402 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 256626 257402 268 + . alignment_id 14 ; Query gi|452887651|gb|AGG17942.1| ; Align 256626 5 156 ; Align 256782 58 315 ; Align 257100 163 303 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887651|gb|AGG17942.1| olfactory receptor 10 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 218 Query range: 3 -> 165 Target range: 299659 -> 300144 4 : GluAsnThrGlnLeuAspAlaAspIleGluTyrAsnLeuLysLeuThrLysTrpIleL : 23 ..!||| !!!.! !.!. !||||||.!.|||!..|||:!!:!! !:!!|||:!:| ArgAsnTyrHisTyrGlnAsnAspIleHisTyrThrLeuGlnMetCysGlnTrpLeuL 299660 : AGGAATTACCATTACCAAAATGACATACATTACACGCTGCAAATGTGCCAATGGTTGT : 299717 24 : euLysProLeuGlyValTrpSerIleValThrLysAspTyrArgPheIleSerLysLe : 42 ||||||||:!!||||||||| !!:!::!! !:!! !! !!!! :!:..! ! || euLysProIleGlyValTrpArgLeuLeuAspGlnArgSerSerLysLeuGluHisLe 299718 : TGAAACCTATCGGAGTATGGCGATTGCTAGATCAACGTTCCAGCAAGCTGGAACACCT : 299774 43 : uSerSerValPheIleIleIleLeuAsnSerPheIleMetPheIleThrPheMetPro : 61 | !|||:!! !!:!!!!:! !:!! !! !! !! !:!!|||.!!! ! !!:!!||| uValSerIleValLeuMetThrIleCysPheSerSerLeuPhePheIleValLeuPro 299775 : CGTCTCGATCGTTCTCATGACAATATGCTTCTCCAGTCTGTTCTTCATCGTCTTGCCA : 299831 62 : CysCysValHisMetIleTyrArgGluThrAspProAlaValLysIleIleLeuMetG : 81 ! ! !! !:!!!!:.!!!:! !|||! !..! ! !||||||:!:! !:!!.!.| SerGlyHisTyrIlePhePheAlaGluLysSerIleHisValLysValLysValPheG 299832 : TCCGGTCATTACATCTTCTTCGCGGAGAAAAGTATACACGTCAAGGTGAAAGTATTCG : 299891 82 : lyProPheGlyPheCysLeuThrAsnCysCysLysTyrTyrPheIleIlePheArgSe : 100 ||||| !!||||||||||||:!!::! ! !||||||! !!:!:!! !.!.!.!.! lyProValGlyPheCysLeuSerSerIleValLysTyrCysTyrLeuCysLeuAsnGl 299892 : GTCCGGTTGGTTTTTGCCTCTCCTCCATCGTCAAATATTGCTATCTTTGCCTGAACGG : 299948 101 : rAsnIleIleThrHisCysLeuGluAsnLeuLysSerAspTrpAlaArgProLysThr : 119 !..! .!! !!..|||:!!:!!:!!:!!:!!!!!||| ... ..! yGlyAlaPheGluArgCysIleGlnHisValGluArgAspUnkUnkUnkUnkUnkUnk 299949 : TGGCGCGTTCGAACGATGCATCCAACACGTCGAGAGAGACNNNNNNNNNNNNNNNNTT : 300005 120 : Lys--GlnAspArgLeuGluMetIleLysAsnValAsnIleGlyHisAsnIleThrLy : 138 ::!##!!. ||| ! |||:!:!:! !!|||!.!!!:.!!...|||:!:|||! Arg##His---ArgThrIleMetLeuArgTyrValThrMetSerArgAsnLeuThrTh 300006 : CGAATCAT---CGTACGATCATGTTGAGATACGTGACTATGAGCAGAAATCTGACGAC : 300061 139 : sLeuCysAlaIlePheMetPheSerGlyGlyValSerTyrHisThrIleMetProIle : 157 :!!||||||:!:|||:!:!:!:!!||||||:!!||||||||||||:!:|||! !.!! rValCysAlaValPheLeuTyrAlaGlyGlyMetSerTyrHisThrValMetGlnPhe 300062 : CGTGTGCGCCGTGTTTCTTTACGCAGGTGGTATGTCGTATCACACGGTGATGCAGTTC : 300118 158 : TrpSerGlySerThrValAsnGlu : 165 ! ||| !..!! ! !!:!||| LeuSerLysAspArgSerSerGlu 300119 : TTATCGAAGGACAGAAGCAGCGAG : 300144 vulgar: gi|452887651|gb|AGG17942.1| 3 165 . KQ414889.1 299659 300144 + 218 M 117 351 F 0 2 M 1 3 G 1 0 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 299660 300144 218 + . gene_id 15 ; sequence gi|452887651|gb|AGG17942.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 299660 300144 . + . KQ414889.1 exonerate:protein2genome:local exon 299660 300144 . + . insertions 0 ; deletions 1 ; frameshifts 2 KQ414889.1 exonerate:protein2genome:local similarity 299660 300144 218 + . alignment_id 15 ; Query gi|452887651|gb|AGG17942.1| ; Align 299660 4 351 ; Align 300013 121 3 ; Align 300016 123 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887651|gb|AGG17942.1| olfactory receptor 10 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 292 -> 338 Target range: 258249 -> 258387 293 : TyrTyrCysMetThrGluTrpSerAsnSerGluThrIleAsnIleLeuThrTyrLeuM : 312 :::||| ... |||||||||!.....::: |||::: :::|||!!!| PheTyrTyrPheGlnGluTrpSerThrGlnAspIleGlnAsnLeuSerSerTyrPheM 258250 : ttttattattttcaggaATGGTCTACGCaagatattcaaaatttgagttcgtaCTTTA : 258307 313 : etLeuLeuValAlaLeuSerPheAsnIlePheIlePheCysTyrIleGlyGluLeuLe : 331 ||:!!|||:!!:::||||||||||||||||||:::...|||||||||||||||:!!|| etIleLeuIleSerLeuSerPheAsnIlePheValIleCysTyrIleGlyGluIleLe 258308 : TGATACTCATATcactttctttcaatatttttgtaatatgttACATAGGTGAAATATT : 258364 332 : uLysLysGlnCysAsnSerIle : 338 |! !:!!||| ...||| uThrGluGlnValProGluIle 258365 : AACAGAACAGGTACCagagatt : 258387 vulgar: gi|452887651|gb|AGG17942.1| 292 338 . KQ414889.1 258249 258387 + 130 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 258250 258387 130 + . gene_id 16 ; sequence gi|452887651|gb|AGG17942.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 258250 258387 . + . KQ414889.1 exonerate:protein2genome:local exon 258250 258387 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 258250 258387 130 + . alignment_id 16 ; Query gi|452887651|gb|AGG17942.1| ; Align 258250 293 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887651|gb|AGG17942.1| olfactory receptor 10 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 282 -> 334 Target range: 261688 -> 261844 283 : AlaSerThrLeuIleIleCysLeuLeuGluTyrTyrCysMetThrGluTrpSerAsnS : 302 ..!!:! !:!!||||||! !!!. :::::: ::: ||||||:!!.!.. CysAsnCysValIleIlePhePhe***TyrPhePheLeuLeuGlnGluTrpAlaGluG 261689 : TGCAATTGTGTAATAATCTTTTTctgatatttctttcttttgcagGAATGGGCTGAGC : 261746 303 : erGluThrIleAsnIleLeuThrTyrLeuMetLeuLeuValAlaLeuSerPheAsnIl : 321 .!!!:! ! !|||:!:! !||||||!!!|||:!!|||:!!|||:!!!!!||||||:! lnAspIleGlnAsnLeuSerThrTyrPheMetMetLeuIleAlaIleCysPheAsnVa 261747 : AAGATATACAAAATCTGTCCACGTATTTCATGATGCTGATAGCGATCTGTTTCAATGT : 261803 322 : ePheIlePheCysTyrIleGlyGluLeuLeuLysLysGln : 334 !||||||.!!|||||||||||||||:!!|||! !:!!||| lPheIleIleCysTyrIleGlyGluIleLeuThrGluGln 261804 : ATTTATAATCTGTTACATCGGTGAAATACTAACGGAACAG : 261844 vulgar: gi|452887651|gb|AGG17942.1| 282 334 . KQ414889.1 261688 261844 + 126 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 261689 261844 126 + . gene_id 17 ; sequence gi|452887651|gb|AGG17942.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 261689 261844 . + . KQ414889.1 exonerate:protein2genome:local exon 261689 261844 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 261689 261844 126 + . alignment_id 17 ; Query gi|452887651|gb|AGG17942.1| ; Align 261689 283 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887651|gb|AGG17942.1| olfactory receptor 10 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 297 -> 334 Target range: 224323 -> 224434 298 : GluTrpSerAsnSerGluThrIleAsnIleLeuThrTyrLeuMetLeuLeuValAlaL : 317 |||||||||:::|||.!. !! !!:! :!!||||||!!!!!:||||||:!!:!:| GluTrpSerSerSerHisLeuThrSerAlaValThrTyrPheIleLeuLeuMetSerL 224324 : gagtggagttcgagtcATTTAACTAGCGCGGTGACTTACTTCATACTACTCATGTCtc : 224381 318 : euSerPheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuLysLysGln : 334 ||:::||||||||||||||||||||||||||||||||||||:!! :!!||| euThrPheAsnIlePheIlePheCysTyrIleGlyGluLeuValAlaGluGln 224382 : ttactttcaatatttttatattttgttacatAGGAGAGCTGGTAGCTGAAcag : 224434 vulgar: gi|452887651|gb|AGG17942.1| 297 334 . KQ414889.1 224323 224434 + 125 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224324 224434 125 + . gene_id 18 ; sequence gi|452887651|gb|AGG17942.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224324 224434 . + . KQ414889.1 exonerate:protein2genome:local exon 224324 224434 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224324 224434 125 + . alignment_id 18 ; Query gi|452887651|gb|AGG17942.1| ; Align 224324 298 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887651|gb|AGG17942.1| olfactory receptor 10 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 293 -> 334 Target range: 210651 -> 210774 294 : TyrCysMetThrGluTrpSerAsnSerGluThrIleAsnIleLeuThrTyrLeuMetL : 313 !:! !:!: !||||||..!::!!.!!!: !!|||!:!! !|||||||||:!!:!:| PheLeuLeu***GluTrpAspSerLysAspProIleSerSerLeuThrTyrIleValL 210652 : TTTCTTCTCTAGGAATGGGACTCTAAAGACCCTATCAGCAGTCTGACGTACATAGTAC : 210709 314 : euLeuValAlaLeuSerPheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuLy : 332 |||||..!:!!:!!!!!|||||||||||||||||||||||||||||||||:!!||| euLeuThrSerValThrPheAsnIlePheIlePheCysTyrIleGlyGluValLeuAl 210710 : TCCTCACTTCTGTCACGTTTAACATCTTCATATTCTGTTACATCGGTGAAGTGTTGGC : 210766 333 : sLysGln : 334 :!!||| aGluGln 210767 : TGAACAg : 210774 vulgar: gi|452887651|gb|AGG17942.1| 293 334 . KQ414889.1 210651 210774 + 124 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 210652 210774 124 + . gene_id 19 ; sequence gi|452887651|gb|AGG17942.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 210652 210774 . + . KQ414889.1 exonerate:protein2genome:local exon 210652 210774 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 210652 210774 124 + . alignment_id 19 ; Query gi|452887651|gb|AGG17942.1| ; Align 210652 294 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887651|gb|AGG17942.1| olfactory receptor 10 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 285 -> 334 Target range: 219292 -> 219439 286 : LeuIleIleCysLeuLeuGluTyrTyrCysMetThrGluTrpSerAsnSerGluThrI : 305 ::: ::: ||| :::::: ... !||||||!.!:::!:!!!:..!! IleTyrValAsnLeuTyrLysPheGluTyrGln***GluTrpLysSerAsnAspValT 219293 : atttacgttaatttgtataaatttgaatatcaatAGGAATGGAAATCGAATGATGTAA : 219350 306 : leAsnIleLeuThrTyrLeuMetLeuLeuValAlaLeuSerPheAsnIlePheIlePh : 324 !:! !:!!||||||:!!!!:||||||:!!:!!|||:::||||||||||||||||| hrSerAlaValThrTyrIleIleLeuLeuIleSerLeuThrPheAsnIlePheIlePh 219351 : CGAGTGCAGTGACATACATCATTCTACTTATATCCCTcactttcaacattttcatatt : 219407 325 : eCysTyrIleGlyGluLeuLeuLysLysGln : 334 ||||||||||||||||:!!:!! :!!||| eCysTyrIleGlyGluIleValAlaGluGln 219408 : ttgctaCATAGGAGAGATCGTTGCTGAACAg : 219439 vulgar: gi|452887651|gb|AGG17942.1| 285 334 . KQ414889.1 219292 219439 + 123 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219293 219439 123 + . gene_id 20 ; sequence gi|452887651|gb|AGG17942.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219293 219439 . + . KQ414889.1 exonerate:protein2genome:local exon 219293 219439 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219293 219439 123 + . alignment_id 20 ; Query gi|452887651|gb|AGG17942.1| ; Align 219293 286 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887651|gb|AGG17942.1| olfactory receptor 10 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 120 Query range: 289 -> 334 Target range: 214605 -> 214740 290 : LeuLeuGluTyrTyrCysMetThrGluTrpSerAsnSerGluThrIleAsnIleLeuT : 309 :::::::::::: ::: ||||||!:!:::!:!.!. !! !!.!! !:!!| IleValLysPheLeuIleLeu***GluTrpAsnSerAsnAsnLeuThrThrThrValT 214606 : atcgtcaaatttttaatattataggAATGGAATTCGAACAATTTAACAACTACAGTAA : 214663 310 : hrTyrLeuMetLeuLeuValAlaLeuSerPheAsnIlePheIlePheCysTyrIleGl : 328 |||||:!!:!!|||! !:!!:!!|||:::||||||||||||||||||||||||||||| hrTyrValValLeuTyrIleSerLeuThrPheAsnIlePheIlePheCysTyrIleGl 214664 : CTTACGTGGTGTTGTATATCTCTCtcactttcaatattttcatattttgttaCATAGG : 214720 329 : yGluLeuLeuLysLysGln : 334 |||||||:!!...:!!||| yGluLeuValSerGluGln 214721 : CGAGCTTGTGTCTGAACAG : 214740 vulgar: gi|452887651|gb|AGG17942.1| 289 334 . KQ414889.1 214605 214740 + 120 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 214606 214740 120 + . gene_id 21 ; sequence gi|452887651|gb|AGG17942.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 214606 214740 . + . KQ414889.1 exonerate:protein2genome:local exon 214606 214740 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 214606 214740 120 + . alignment_id 21 ; Query gi|452887651|gb|AGG17942.1| ; Align 214606 290 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887651|gb|AGG17942.1| olfactory receptor 10 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 262 -> 337 Target range: 234518 -> 234923 263 : LeuAspPheSerThrAsnIleGluLysMetLeuArgGluIleCysLeuValGluValG : 282 !!!..!|||! ! !|||||||||!!.:!::!!!.! !|||||||||||||||:!!! PheSerPheIleArgAsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuV 234519 : TTCAGTTTTATACGGAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGG : 234576 283 : lyAlaSerThrLeuIleIleCysLeuLeuGluTyrTyrCysMetThrGluTrpSerAs : 301 !!.!!!!||||||! !!!:|||:!!||||||||||||! :!:|||! ! ! ! !.. alGlyCysThrLeuAsnMetCysMetLeuGluTyrTyrLeuLeuThrValArgPheTh 234577 : TAGGATGCACGTTGAACATGTGCATGCTCGAGTATTATTTACTCACGGTACGTTTTac : 234633 302 : nSerGluThrIleAsnIleLeuThrTyrLeuMetLeuLeuValAla{Le} >>>> T : 317 .:::::: :::...||| ::: ... !{ } rAsnLysIleLeuArgIle***SerAsn***PheLysTyrPheArg{Ly}++ 234634 : taataaaattcttcgaatttaatcaaactaatttaaatactttaGA{AA}gt...... : 234685 318 : arget Intron 1 >>>> {u}SerPheAsnIlePheIlePheCysTyrIleGlyG : 329 180 bp {!}!!!||||||||||||||||||||||||||||||| +-{s}ThrPheAsnIlePheIlePheCysTyrIleGlyG 234686 : ...................at{G}ACATTtaatatattcatattttgttACATCGGAG : 234897 330 : luLeuLeuLysLysGlnCysAsnSer : 337 || !|||! !:!!||| ...||| luThrLeuThrGluGlnValGlySer 234898 : AGACGCTTACAGAGCAGGTAGGATCA : 234923 vulgar: gi|452887651|gb|AGG17942.1| 262 337 . KQ414889.1 234518 234923 + 115 M 54 162 S 0 2 5 0 2 I 0 176 3 0 2 S 1 1 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 234519 234923 115 + . gene_id 22 ; sequence gi|452887651|gb|AGG17942.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 234519 234682 . + . KQ414889.1 exonerate:protein2genome:local exon 234519 234682 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 234683 234684 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 234683 234862 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234861 234862 . + . intron_id 0 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 234863 234923 . + . KQ414889.1 exonerate:protein2genome:local exon 234863 234923 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 234519 234923 115 + . alignment_id 22 ; Query gi|452887651|gb|AGG17942.1| ; Align 234519 263 162 ; Align 234864 318 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887651|gb|AGG17942.1| olfactory receptor 10 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 179 -> 241 Target range: 202709 -> 202895 180 : IlePheValAsnCysGlnGluThrProIleTyrGluPheIlePheIleLeuHisLeuT : 199 .!!.!!:!!:!! !::! ! !:!|||:!: !!|||.!!.!!||| :!!!..:!!. PheIleIleAspValArgTyrSerProValAsnGluIlePhePheSerIleArgIleV 202710 : TTTATCATTGATGTTAGATACAGTCCTGTGAACGAGATCTTCTTCTCGATTCGAATCG : 202767 200 : hrCysGlyMetValMetGlnThrIleThrThrAlaAlaCysHisLeuAlaAlaValPh : 218 .!..!! !!!::!!!!:!!. !:!!|||..!!.!|||||| !|||.!!|||:!!|| alAlaValIleLeuIleHisGlyValThrValGlyAlaCysCysLeuThrAlaLeuPh 202768 : TAGCTGTCATCCTAATTCACGGTGTCACTGTAGGAGCTTGTTGCTTGACAGCGTTGTT : 202824 219 : eAlaSerHisValCysGlyGlnValAspIleLeuLysSerGlnLeuGlnAsnLeuVal : 237 |||| !|||! !|||||||||:!!|||:!!|||! !:!! !|||:!!:!!|||:!! eAlaValHisAspCysGlyGlnMetAspValLeuMetAlaTrpLeuGluHisLeuMet 202825 : TGCGGTTCACGATTGCGGCCAGATGGACGTTTTGATGGCCTGGCTGGAACATTTGATG : 202881 238 : AspLysGluSer : 241 ||| ...||| AspGlyArgSer 202882 : GATGGTCGTTCG : 202895 vulgar: gi|452887651|gb|AGG17942.1| 179 241 . KQ414889.1 202709 202895 + 114 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 202710 202895 114 + . gene_id 23 ; sequence gi|452887651|gb|AGG17942.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 202710 202895 . + . KQ414889.1 exonerate:protein2genome:local exon 202710 202895 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 202710 202895 114 + . alignment_id 23 ; Query gi|452887651|gb|AGG17942.1| ; Align 202710 180 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887651|gb|AGG17942.1| olfactory receptor 10 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 297 -> 334 Target range: 272836 -> 272947 298 : GluTrpSerAsnSerGluThrIleAsnIleLeuThrTyrLeuMetLeuLeuValAlaL : 317 ||||||!!!:!! !!!: ! !:!:!! !||||||!!!|||:!!|||:!!:!!: GluTrpThrAspHisAspPheGlnSerLeuThrThrTyrPheMetIleLeuIleSerM 272837 : gAATGGACTGATCACGATTTTCAGAGTCTAACCACGTATTTCATGATACTTATATCCA : 272894 318 : euSerPheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuLysLysGln : 334 !::::||||||||||||||| |||||||||||||||:!!|||! !:!!::! etThrPheAsnIlePheIleValCysTyrIleGlyGluIleLeuThrGluArg 272895 : TgacttttaacatttttatagtATGTTACATCGGCGAAATATTAACGGAGAGG : 272947 vulgar: gi|452887651|gb|AGG17942.1| 297 334 . KQ414889.1 272836 272947 + 109 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 272837 272947 109 + . gene_id 24 ; sequence gi|452887651|gb|AGG17942.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 272837 272947 . + . KQ414889.1 exonerate:protein2genome:local exon 272837 272947 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 272837 272947 109 + . alignment_id 24 ; Query gi|452887651|gb|AGG17942.1| ; Align 272837 298 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887651|gb|AGG17942.1| olfactory receptor 10 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 297 -> 334 Target range: 277371 -> 277482 298 : GluTrpSerAsnSerGluThrIleAsnIleLeuThrTyrLeuMetLeuLeuValAlaL : 317 |||||||||:!!|||!!:..! !..!!: !|||:!!!!!|||:!!|||:!!:!!: GluTrpSerAspSerAspValGlnThrMetThrThrHisPheMetIleLeuIleSerM 277372 : GAATGGTCTGACAGCGATGTTCAGACAATGACTACGCATTTCATGATCCTTATATCCA : 277429 318 : euSerPheAsnIlePheIlePheCysTyrIleGlyGluLeuLeuLysLysGln : 334 !: |||||||||||| ! ! |||||||||||||||:!!|||! :!!||| etCysPheAsnIlePheThrValCysTyrIleGlyGluIleLeuThrGluGln 277430 : TgtgtttcaacatttttacAGTATGCTATATCGGAGAAATACTAACTGAACAG : 277482 vulgar: gi|452887651|gb|AGG17942.1| 297 334 . KQ414889.1 277371 277482 + 109 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 277372 277482 109 + . gene_id 25 ; sequence gi|452887651|gb|AGG17942.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 277372 277482 . + . KQ414889.1 exonerate:protein2genome:local exon 277372 277482 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 277372 277482 109 + . alignment_id 25 ; Query gi|452887651|gb|AGG17942.1| ; Align 277372 298 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747906|gb|AGS43048.1| odorant receptor Or1c [Cephus cinctus] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 269 -> 318 Target range: 1677746 -> 1677893 270 : GluArgTyrArgLysCysValMetHisHisGlnTyrLeuIleLeuLeuValAspGl : 288 :::::::::...||||||:!! !..||| ! ! |||||| !! !|||!!:|| GlnLysPheGluLysCysLeuArgArgHisTyrLeuLeuIleAspTyrValGluGl 1677747 : cagaaattcgagaaatgcTTGCGTCGACACTATTTGCTCATTGACTACGTAGAGga : 1677801 289 : uValAsnAspValPheGlySerSerMetPheSerGlnLeuLeuSerSerSerLeuI : 307 |:::|||::::::||| !! !!!!:!:.!.! !|||:!!:!!!!!|||||||||: uLeuAsnAsnLeuPheLysTyrThrLeuLeuLeuGlnMetMetThrSerSerLeuL 1677802 : attgaataatttgttCAAATACACCCTTCTGTTACAGATGATGACCTCGAGTTTGT : 1677858 308 : leIleCysLeuThrGlyPheGlnSerLeuLeuVal : 318 !!||||||:!!:!!|||!:!:!!!!!|||:!!||| euIleCysMetSerGlyTyrGluCysLeuValVal 1677859 : TAATCTGTATGTCTGGTTACGAATGTTTAGTGGTG : 1677893 vulgar: gi|528747906|gb|AGS43048.1| 269 318 . KQ414915.1 1677746 1677893 + 112 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1677747 1677893 112 + . gene_id 1 ; sequence gi|528747906|gb|AGS43048.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1677747 1677893 . + . KQ414915.1 exonerate:protein2genome:local exon 1677747 1677893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1677747 1677893 112 + . alignment_id 1 ; Query gi|528747906|gb|AGS43048.1| ; Align 1677747 270 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|528747910|gb|AGS43050.1| odorant receptor Or2a [Cephus cinctus] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 0 -> 69 Target range: 1680265 -> 1680472 1 : MetValAsnLeuValLysGlyTyrMetSerThrLysIleSerGlnLeuLeuMetTh : 19 ||||||!.. !..!! ! !|||.!.|||! !::!:!!!!!!:!:!!||||||! MetValThrAspThrThrLysTyrPheSerIleArgLeuThrArgIleLeuMetLy 1680266 : ATGGTCACAGACACGACGAAATACTTTTCCATTCGACTCACACGGATACTCATGAA : 1680320 20 : rLeuIleGlyMetLysArgGlyLysThrLysArgGluGlnLeuLeuMetAspAlaL : 38 !:!!||||||.!. !!.!! !:!!|||!:!||||||||||||:!!:!! !.! sIleIleGlyPheTrpAsnValGlnThrArgArgGluGlnLeuIleLeuArgValA 1680321 : AATCATAGGCTTCTGGAATGTTCAGACAAGAAGGGAACAGCTGATATTGCGAGTCA : 1680377 39 : euPheValTyrIleLeuAlaThrValLeuSerAlaIleTrpLeuGluAsnSerGlu : 56 !!:!:!!|||!!:||| !..!:!!! ! !:!!||| :!!||| ! !!!: snTyrLeuTyrMetLeuLeuValLeuSerValSerIleThrIleGluLeuLeuAsp 1680378 : ACTATCTGTACATGTTGCTCGTTCTTTCTGTATCTATAACAATCGAATTGTTAGAT : 1680431 57 : LeuPheTyrSerArgAsnAspLeuTyrAlaLeuThrTyr : 69 |||!:!|||!!!|||:!!|||||||||!.!! !|||:!! LeuTyrTyrCysArgHisAspLeuTyrValCysThrHis 1680432 : CTTTATTATTGCCGGCATGATTTATATGTGTGTACACAT : 1680472 vulgar: gi|528747910|gb|AGS43050.1| 0 69 . KQ414915.1 1680265 1680472 + 121 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1680266 1680472 121 + . gene_id 1 ; sequence gi|528747910|gb|AGS43050.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1680266 1680472 . + . KQ414915.1 exonerate:protein2genome:local exon 1680266 1680472 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1680266 1680472 121 + . alignment_id 1 ; Query gi|528747910|gb|AGS43050.1| ; Align 1680266 1 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887659|gb|AGG17946.1| olfactory receptor 13 [Microplitis mediator] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 287 -> 395 Target range: 807257 -> 807581 288 : GlyTyrGlnIleLeuLeuThrLeuThrValGlyProArgThrAsnIleMetProPheI : 307 |||!:! .!!|||:!!.!!|||!:!..! ! !!.!..! !:!! ! !. GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 308 : leValTyrIleMetThrMetTyrMetValIleSerIlePheCysIleLeuSerGluAs : 326 !!||| !!::!!|||:!! !!: !:!:! !:!!!:!..! ! !.!!.!.!. heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 327 : nLeuIleAlaGluSerAsnLysValCysGluAlaPheTrpAlaCysGlyTrpTyrAsp : 345 .||| :!!..!!!!.!.:!!:!!...:!!||| !!::! !! ! !|||||| ! rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 346 : MetProProAspCysIleSerAspValTyrTyrCysIleAlaArgSerGlnLysProL : 365 ! ! ! !!... !!!!|||:!! !! !||| !|||.!!.!...!|||! CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 366 : euAlaLeuThrAlaGlyLysPheLeuThrPheGlyTyrGlyThrIleThrAspValTh : 384 ! !:!!|||||||||||||||:!! !!.!...! ! !|||.!!! !!!::!! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 385 : rArgThrAlaValGlyTyrLeuSerValLeuArg : 395 !!:!.!!:!!! !..!||||||||||||:!!!:! uLysAlaSerGlySerTyrLeuSerValMetLys 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: gi|452887659|gb|AGG17946.1| 287 395 . KQ414940.1 807257 807581 + 107 M 108 324 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807581 107 + . gene_id 1 ; sequence gi|452887659|gb|AGG17946.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807581 107 + . alignment_id 1 ; Query gi|452887659|gb|AGG17946.1| ; Align 807258 288 324 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887647|gb|AGG17940.1| olfactory receptor 7 [Microplitis mediator] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 129 -> 216 Target range: 11477 -> 11735 130 : AlaTyrThrThrThrAlaIlePheLeuSerGluProIleLeuProArgIleIleAsnTyr : 149 ||||||! ! !:!! !:!:|||:!!..!! !||| ! !!|||:!::!:|||! AlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArgLeuValAsnSer 11478 : GCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGATTGGTGAACTCG : 11535 150 : PheSerLysSerAsnGluSerValProLeuLysPheAlaLeuProLeuGluTyrIleIle : 169 !:!!.!! !..!||| !!!! ! !|||:!!|||!.!:!!||| ! ! |||.!!:!! TyrLysThrGlnAsnIleThrProSerLeuGlnPheValIleProGlyTyrTyrPheVal 11536 : TACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTC : 11595 170 : PheGluLysGluAsnHisTyrTrpLeuMetLeuAlaIleThrAsnMetPheAlaIleAsn : 189 !||| !||| !!:!!|||!:::!!!!:||| ! !||| !! !! !||| AspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeuIle--- 11596 : GACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTGATT--- : 11655 190 : MetIleIleValThrIleSerCysAspIleMetPheIleThrPheValGlnHisValCys : 209 :!::!::!:||| ! !:!!||||||! !! !:!!!:..!.!.|||||||||..!||| ValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCys 11656 : GTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGC : 11712 210 : GlyLeuPheAlaValValGly : 216 |||||||||||||||!.!||| GlyLeuPheAlaValAlaGly 11713 : GGACTGTTCGCCGTGGCCGGG : 11735 vulgar: gi|452887647|gb|AGG17940.1| 129 216 . LHQN01025741.1 11477 11735 + 141 M 59 177 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11478 11735 141 + . gene_id 1 ; sequence gi|452887647|gb|AGG17940.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11478 11735 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11478 11735 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 11478 11735 141 + . alignment_id 1 ; Query gi|452887647|gb|AGG17940.1| ; Align 11478 130 177 ; Align 11655 190 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887647|gb|AGG17940.1| olfactory receptor 7 [Microplitis mediator] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 134 -> 216 Target range: 1588 -> 1831 135 : AlaIlePheLeuSerGluProIleLeuProArgIleIleAsnTyrPheSerLysSerAsnGl : 155 !.!|||||| !|||! ! !!||| !||||||:!!:!!:!! !.!!||| !!.!||||| ValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGl 1589 : GTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGA : 1649 156 : uSerValProLeuLysPheAlaLeuProLeuGluTyrIleIlePheGluLysGluAsnHisT : 176 |||| ! !:!! ! ||| !! !||| ! ! ||| !:!! !|||:!!|||:!!:!!| uSerArgGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrT 1650 : ATCGCGTGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAGGAACATTATT : 1712 177 : yrTrpLeuMetLeuAlaIleThrAsnMetPheAlaIleAsnMetIleIleValThrIleSer : 196 || |||||| ! !!!: ! !:!!.!..!!:!! :!!.!!.!!||| !|||||| yrIleLeuMetGlyHisMetLeuCysValIleThrVal---ValPhePheValTyrIleSer 1713 : ACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTA---GTGTTTTTCGTCTACATCTCC : 1769 197 : CysAspIleMetPheIleThrPheValGlnHisValCysGlyLeuPheAlaValValGly : 216 ||||||! !!:!:!!!:!.!.!!|||||||||!.!|||||||||.!. !||| !||| CysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnValSerGly 1770 : TGTGACACGATCTACATGAATATCGTGCAACACGCGTGCGGATTACTGAACGTCTCTGGG : 1831 vulgar: gi|452887647|gb|AGG17940.1| 134 216 . LHQN01025741.1 1588 1831 + 129 M 54 162 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1589 1831 129 + . gene_id 2 ; sequence gi|452887647|gb|AGG17940.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1589 1831 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1589 1831 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 1589 1831 129 + . alignment_id 2 ; Query gi|452887647|gb|AGG17940.1| ; Align 1589 135 162 ; Align 1751 190 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887647|gb|AGG17940.1| olfactory receptor 7 [Microplitis mediator] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 133 -> 216 Target range: 4996 -> 5242 134 : ThrAlaIlePheLeuSerGluProIleLeuProArgIleIleAsnTyrPheSerLysSerAs : 154 .!!|||:!!|||:!!!!! !|||.!!:!! !!! !|||:!::!! !.!!! ! !! !|| AlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAs 4997 : GCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAA : 5057 155 : nGluSerValProLeuLysPheAlaLeuProLeuGluTyrIleIlePheGluLysGluAsnH : 175 ||||!!! ! !!! ! !|||!.!! !||| ! ! |||.!!:!! !||| ! :!! !!| nGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrH 5058 : CGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATC : 5120 176 : isTyrTrpLeuMetLeuAlaIleThrAsnMetPheAlaIleAsnMetIleIleValThrIle : 195 ||||| |||!!::!!!.! !! ! !!:!: ! !.!:!!! :!:||| !||| ! ! isTyr---LeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCys 5121 : ATTAC---TTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGC : 5177 196 : SerCysAspIleMetPheIleThrPheValGlnHisValCysGlyLeuPheAlaValValGl : 216 :!!|||||| !! !:!:!: ! !|||||||||!.!|||||||||!!.|||:!!!.!|| AlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGl 5178 : GCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGG : 5240 217 : y : 216 | y 5241 : G : 5242 vulgar: gi|452887647|gb|AGG17940.1| 133 216 . LHQN01025741.1 4996 5242 + 108 M 43 129 G 1 0 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4997 5242 108 + . gene_id 3 ; sequence gi|452887647|gb|AGG17940.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4997 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4997 5242 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 4997 5242 108 + . alignment_id 3 ; Query gi|452887647|gb|AGG17940.1| ; Align 4997 134 129 ; Align 5126 178 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887647|gb|AGG17940.1| olfactory receptor 7 [Microplitis mediator] Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 130 Query range: 129 -> 216 Target range: 1245 -> 987 130 : AlaTyrThrThrThrAlaIlePheLeuSerGluProIleLeuProArgIleIleAsnTyrPh : 150 ||||||! ! !:!! !:!:|||:!!..!! !||| ! !!|||!!::!:|||! !: AlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArgMetValAsnSerTy 1245 : GCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGAATGGTGAACTCGTA : 1185 151 : eSerLysSerAsnGluSerValProLeuLysPheAlaLeuProLeuGluTyrIleIlePheG : 171 !!.!! !..!||| !!!! ! !||| ! !!!.!:!!||| ! ! |||.!!:!! !| rLysThrGlnAsnIleThrProSerLeuProValValValProGlyTyrTyrPheValAspG 1184 : CAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACG : 1122 172 : luLysGluAsnHisTyrTrpLeuMetLeuAlaIleThrAsnMetPheAlaIleAsnMetIle : 191 || !||| !!:!!|||!:::!!!!:||| ! !||| !! !! !||| :!::!: luValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeuIle---ValVal 1121 : AAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTGATT---GTAGTG : 1065 192 : IleValThrIleSerCysAspIleMetPheIleThrPheValGlnHisValCysGlyLeuPh : 212 :!:||| ! !:!!||||||! !! !:!!!:..!.!.|||||||||..!||||||||||| ValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPh 1064 : GTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTT : 1002 213 : eAlaValValGly : 216 |||||||!.!||| eAlaValAlaGly 1001 : CGCCGTGGCCGGG : 988 vulgar: gi|452887647|gb|AGG17940.1| 129 216 . LHQN01027734.1 1245 987 - 130 M 59 177 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 988 1245 130 - . gene_id 1 ; sequence gi|452887647|gb|AGG17940.1| ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 988 1245 . - . LHQN01027734.1 exonerate:protein2genome:local exon 988 1245 . - . insertions 0 ; deletions 1 LHQN01027734.1 exonerate:protein2genome:local similarity 988 1245 130 - . alignment_id 1 ; Query gi|452887647|gb|AGG17940.1| ; Align 1246 130 177 ; Align 1069 190 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887647|gb|AGG17940.1| olfactory receptor 7 [Microplitis mediator] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 133 -> 216 Target range: 5666 -> 5420 134 : ThrAlaIlePheLeuSerGluProIleLeuProArgIleIleAsnTyrPheSerLysSerAs : 154 .!!|||:!!|||:!!!!! !|||.!!:!! !!! !|||:!::!! !.!!! ! !! !|| AlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAs 5666 : GCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAA : 5606 155 : nGluSerValProLeuLysPheAlaLeuProLeuGluTyrIleIlePheGluLysGluAsnH : 175 ||||!!! ! !!! ! !|||!.!! !||| ! ! |||.!!:!! !!::!!!!:!!.: nGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal---AspGluAspLysT 5605 : CGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC---GACGAGGACAAAT : 5546 176 : isTyrTrpLeuMetLeuAlaIleThrAsnMetPheAlaIleAsnMetIleIleValThrIle : 195 !! !!::|||!!::!!!.! !! ! !!:!: ! !.!:!!! :!:||| !||| ! ! yrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCys 5545 : ATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGC : 5486 196 : SerCysAspIleMetPheIleThrPheValGlnHisValCysGlyLeuPheAlaValValGl : 216 :!!|||||| !! !:!:!: ! !|||||||||!.!|||||||||!!.|||:!!!.!|| AlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGl 5485 : GCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGG : 5423 217 : y : 216 | y 5422 : G : 5421 vulgar: gi|452887647|gb|AGG17940.1| 133 216 . LHQN01028732.1 5666 5420 - 100 M 36 108 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5666 100 - . gene_id 1 ; sequence gi|452887647|gb|AGG17940.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5666 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5666 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5666 100 - . alignment_id 1 ; Query gi|452887647|gb|AGG17940.1| ; Align 5667 134 108 ; Align 5559 171 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722548|gb|AKO90016.1| odorant receptor 52 [Microplitis mediator] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 161 Query range: 5 -> 228 Target range: 203450 -> 204218 6 : AspPheLysTyrAlaValAlaTrpAsnArgThrSerLeuArgPheValGlyLeuTrpP : 25 ||||||:!!!::|||||| ! !||||||:!!|||||||||.!.:!!||||||||| AspPheGluTrpAlaValArgMetAsnArgSerSerLeuArgIleIleGlyLeuTrpP 203451 : GACTTCGAATGGGCAGTTCGGATGAATCGCTCTAGTTTGAGAATAATTGGTCTTTGGT : 203508 26 : roGluProAsnAspGly<-><-><-><->PhePheThrLysLeuLysGlyTrpLeuGl : 40 !||| !:!! !!!.! |||... ||||||:::..! ! ! heGluGluAspHisAlaGlyThrMetLysPheLeuArgLysLeuArgAsnMetGlyIl 203509 : TTGAAGAAGATCACGCTggaacgatgaaatttttaagaaaattacgcAATATGGGGAT : 203565 41 : yAlaTrpSerIlePheMetThrIleTyrLeuProGlnSerThrLeuAlaTyrValAsn : 59 !!.! !! !|||.!!.!...! ! |||||| ! !! ! ! ! !.!. eValLeuIleIleLeuPheValCysValLeuProCysLeuTyrSerLeuIleLysGln 203566 : CGTGCTGATAATCCTCTTCGTTTGTGTACTTCCTTGCCTCTACTCTTTGATCAAACAA : 203622 60 : TrpGlyAspMetAsnAlaValIleGluSerLeuSerIleAsnGlyProIleLeuIleA : 79 !! ! !..!:!:! |||||||||!!:!:!|||||| !!.! !|||:!: !|||. CysAspSerLeuMetAlaValIleAspAsnLeuSerTyrThrIleProLeuThrIleT 203623 : TGTGACAGTTTAATGGCGGTGATAGATAATCTTTCATATACTATTCCTTTGACAATAA : 203682 80 : laIleIleLysIleIleIlePheArgHisTyrArgAsp{V} >>>> Target Int : 92 !!:!:!!:||| !|||:!!.!. ! ! ! !:::::{|} 93 bp hrLeuMetLysTyrIleValIleLeuSerLysLysGlu{V}++ 203683 : CACTGATGAAGTATATCGTTATATTGAGTAAAAaggaa{g}gt............... : 203724 93 : ron 1 >>>> {al}LeuLysLeuAlaIleValThrMetThrLysAspTrpAsnGlu : 106 {||}||| !! ! !:!! !! !!!:.!!:!!|||||| :!! ++{al}LeuLeuProLeuValAsnMetIleAlaGluAspTrpAlaLys 203725 : ..........ag{TT}CTCTTGCCACTCGTAAACATGATCGCGGAAGATTGGGCAAAG : 203856 107 : LeuArgSerLysGluGluTyrLysValMetLeuLysThrAlaLysIleSerArgIleI : 126 |||!:!!!! ! ||| ! ||||||:!!:!! !.!!::!|||!!!||| !! LeuLysThrAspPheGluArgAspValMetIleGlnArgThrArgIleThrArgAlaT 203857 : TTGAAAACGGATTTCGAAAGAGACGTGATGATACAACGAACACGAATTACCCGAGCAA : 203916 127 : leSerValThrSerThrIleIleThrAsnThrLeuPheIleAlaPheValPhePheLy : 145 !|||:!! !||| ! :!!! ! !||| ! :!! !|||:!!.!. !! hrSerIleLeuSerTyrAlaLeuIlePheThrAla---ValMetPheMetIleValLe 203917 : CCAGTATACTGAGTTATGCGTTAATATTTACTGCA---GTAATGTTCATGATAGTCCT : 203970 146 : sIleTrpIleGlyMetGlnLeuMetLysArgThrAspLeuAspProArgLeuSerVal : 164 ! ! ! ! !|||!!: !! ! !|||:!! !!: !!!.!:!!!.! ! uProArgThrGlyIleThrThrArgTyrValThrAsn---GluThrAsnIleLysLys 203971 : ACCAAGAACCGGTATTACCACTAGATACGTAACAAAC---GAAACCAACATAAAAAAG : 204024 165 : GlyLeuLeuTyrProGlyTyrLeuProPheAspSerArgIleMetThrTyrPheIleP : 184 !!!!! ! ||| ||| :::||| ! !! !!|||||| LeuPheProValProThrTyrTyrIleTyrAspIleSerGluThrProTyrPheGluI 204025 : CTTTTTCCGGTGCCaacttattatatttacgatataTCTGAAACTCCATATTTTGAGA : 204084 185 : roThrTrpIleAlaGlnCysPheAlaThrCysPheSerMetThrAlaTyrAlaAlaPh : 203 !! !!:::!! !||| !.!! ! !!.! ! !..!||| !!.! ! leMetPheLeuLeuGlnMetAlaThrLeuValLeuMetAlaLeuCysTyrIleGlyVa 204085 : TAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAATGGCACTTTGTTACATTGGTGT : 204141 204 : eAspThrPheValSerCysMetValLeuHisIleCysGlyGlnLeuAlaValIleGly : 222 !|||!.!||| !!.!! :!!:!!|||||||||||||||||||||! ! !:!! !! lAspAsnPhePheGlyIleLeuIleLeuHisIleCysGlyGlnLeuGluAsnLeuArg 204142 : CGATAATTTCTTTGGAATATTGATCCTTCATATTTGCGGCCAATTGGAAAATCTTCGT : 204198 223 : ValSerLeuLysAsnLeu : 228 ..! !!||| !|||:!! ThrArgLeuAlaAsnIle 204199 : ACACGACTTGCAAACATA : 204218 vulgar: gi|861722548|gb|AKO90016.1| 5 228 . KQ414617.1 203450 204218 + 161 M 25 75 G 0 12 M 61 183 S 0 1 5 0 2 I 0 89 3 0 2 S 1 2 M 45 135 G 1 0 M 19 57 G 1 0 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203451 204218 161 + . gene_id 1 ; sequence gi|861722548|gb|AKO90016.1| ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203451 203721 . + . KQ414617.1 exonerate:protein2genome:local exon 203451 203721 . + . insertions 12 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 203722 203723 . + . intron_id 1 ; splice_site "gt" KQ414617.1 exonerate:protein2genome:local intron 203722 203814 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 203813 203814 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 203815 204218 . + . KQ414617.1 exonerate:protein2genome:local exon 203815 204218 . + . insertions 0 ; deletions 2 KQ414617.1 exonerate:protein2genome:local similarity 203451 204218 161 + . alignment_id 1 ; Query gi|861722548|gb|AKO90016.1| ; Align 203451 6 75 ; Align 203538 31 183 ; Align 203817 93 135 ; Align 203952 139 57 ; Align 204009 159 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887637|gb|AGG17935.1| olfactory receptor 2 [Microplitis mediator] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 279 -> 360 Target range: 3180421 -> 3180664 280 : ArgLeuLysGlnCysIleLysHisHisGlnLysIleValGlnMetMetValValLe : 298 !.!|||::::!! ! |||... ! !:! ! !...:!: ! !:!!:! AsnLeuArgGluLysThrLysArg***ArgPheCysCysSerLeuAlaGluIleMe 3180422 : AACTTGCGCGAGAAAACGAAGAGATAACGATTCTGTTGCAGTTTAGCTGAAATAAT : 3180476 299 : uAsnAspCysPheSerPheCysValIleValGlnIleMetThrSerThrIleLeuI : 317 !|||||| !!.!...!.!. :!!.!!!.!|||.!!.!. !||| !!!::!!| tAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePheGlySerPheMetValI 3180477 : GAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTTCGGAAGCTTTATGGTGA : 3180533 318 : leCysLeuAsnGlyPheGlnIleLeuLeuGlyAsnAspAspArgHisLeuLeuVal : 335 ||||||||!:! !.!!|||:!:||| !!.!:!! ! !!!! ! !!!!:!! leCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleLeuSerThrGluPheLeu 3180534 : TCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTCTCAGCACCGAATTCTTA : 3180587 336 : ArgArgIleIleAlaIleAsnAlaValLeuLeuGlnLeuPhePheTrpCysTrpTy : 354 !! !|||... :::::::::::!||||||||| !|||.!!!::|||||||| AlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPheLeuTyrCysTrpTy 3180588 : GCGACGAtattttatctgagctcgatACTGCTGCAGAGCTTTCTTTACTGTTGGTA : 3180644 355 : rGlyAsnLysMetSerThr : 360 |||||||:!!:!!!!!||| rGlyAsnGluValArgThr 3180645 : CGGAAACGAAGTGAGAACG : 3180664 vulgar: gi|452887637|gb|AGG17935.1| 279 360 . KQ414646.1 3180421 3180664 + 105 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180422 3180664 105 + . gene_id 1 ; sequence gi|452887637|gb|AGG17935.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180422 3180664 . + . KQ414646.1 exonerate:protein2genome:local exon 3180422 3180664 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180422 3180664 105 + . alignment_id 1 ; Query gi|452887637|gb|AGG17935.1| ; Align 3180422 280 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887635|gb|AGG17934.1| olfactory receptor 1 [Microplitis mediator] Target: KQ414667.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold102, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 986 Query range: 5 -> 376 Target range: 806015 -> 801463 6 : GluTyrGluGluMetMetLysProIleLysMetValAsnArgLeuIleSerIleTrpP : 25 ||||||!!:|||:!!!!:!:!||||||! !:!:..! !:!:!!||||||||||||| GluTyrAspGluLeuIleArgProIleMetLeuThrAlaLysIleIleSerIleTrpP 806015 : GAATACGATGAACTGATCAGACCCATCATGTTAACCGCAAAGATCATTTCCATCTGGC : 805958 26 : roLeuGluGluAsnAspAsnSerIleLeuSerArgLeuArgIlePheHisArgIleSe : 44 |||||! !||||||..! !!!! !! ! !!!!|||! !|||||| !:!!!! roLeuAlaGluAsnSerAlaThrGlyAlaIleLeuPheArgArgPheHisLeuLeuCy 805957 : CGTTGGCAGAGAATAGCGCTACGGGGGCTATATTGTTCAGGAGATTCCACTTGCTCTG : 805901 45 : rMetPheIleLeu >>>> Target Intron 1 >>>> IleLeuIleGlnThrV : 54 !||||||.!!||| 684 bp :!::!!:!:..!:!!: sMetPhePheLeu++ ++ValValValMetSerI 805900 : CATGTTTTTTCTGgt.........................agGTGGTGGTGATGTCGA : 805187 55 : alAlaValThrAlaAspIleValHisHisTrpGlySerMetLysGluValThrGluCy : 73 !!|||||||||||||||:!::!!|||:!! ! !..!:!! ! |||!.!|||||||| leAlaValThrAlaAspValIleHisAsnIleAspAspLeuAspGluAlaThrGluCy 805186 : TCGCGGTGACGGCCGACGTGATCCACAATATCGACGATTTGGACGAAGCGACCGAGTG : 805130 74 : sAlaLeuIleAlaThrAlaPheTyrLeuCysValLeuArgLeuThrValTyrThrIle : 92 ||||||||||..!|||||||||||||||||||||:!!|||:!!..!||||||.!!||| sAlaLeuIleCysThrAlaPheTyrLeuCysValValArgMetValValTyrAlaIle 805129 : TGCGTTGATTTGCACAGCATTTTACCTTTGCGTTGTTCGCATGGTGGTGTACGCGATT : 805073 93 : HisAspLysAspLeuGlnThrSerValGlnIleMetLysAsnAspTrpIleLysPheS : 112 |||.!.||||||:!!! ! !|||.!.! !|||!:!! !||||||! !:!!! !| HisGlnLysAspMetLeuTyrValValAsnThrMetArgIleAspTrpThrGluSerS 805072 : CATCAGAAAGATATGCTTTACGTAGTGAACACAATGAGGATCGATTGGACTGAATCTT : 805013 113 : erGlyGluAspGluLeuThrLeuLysGluLysCysLeuProIleIleLysLeuAlaLy : 131 || !||||||...:!!! !||| !|||||| :!! ! !.!!:::|||||||| erLysGluAspArgValIleLeuAlaGluLysThrMetPheAlaPheArgLeuAlaLy 805012 : CAAAAGAGGATCGTGTTATTCTAGCGGAGAAAACGATGTTCGCCTTTCGTCTTGCCAA : 804956 132 : sPhePheIleMetThrValPheSerThrIleGlyLeuPheMetValAlaProIleLeu : 150 |!:!||||||! |||||| !:!!||||||! !:!!|||||| ! !||||||||| sTyrPheIleSerThrValAlaAlaThrIleValMetPheMetCysIleProIleLeu 804955 : GTACTTTATCAGTACCGTGGCTGCAACTATCGTGATGTTCATGTGCATTCCGATTCTA : 804899 151 : Glu >>>> Target Intron 2 >>>> ValLysIleLeuGlyMetGluGluLy : 160 ||| 728 bp :!! ! :!:|||||| :!!!!:|| Glu++ ++IleTyrValLeuGly---LysAspLy 804898 : GAGgt.........................agATTTACGTGCTTGGT---AAGGACAA : 804144 161 : sLysLeuProPheArgGlyTyrPhePheGluAsnGlnThrIleThrProAlaTyrGly : 179 | !|||||||||||||||||||||||| |||||||||:!::!!||| !!:!! ! sValLeuProPheArgGlyTyrPhePheLeuAsnGlnThrValSerProIlePheGlu 804143 : AGTGCTCCCATTCCGAGGTTACTTCTTCCTCAATCAAACCGTGTCGCCGATCTTCGAG : 804087 180 : GlyLeuTyrLeuLeuGlyValThrAlaGlyGlyPheGlyGlySerMetIleAlaGlyA : 199 !!|||||||||!!!..!||||||||||||||||||||||||!!!|||||||||.!!. CysLeuTyrLeuPheAsnValThrAlaGlyGlyPheGlyGlyThrMetIleAlaSerC 804086 : TGCTTGTACCTGTTCAACGTGACCGCTGGTGGATTCGGCGGTACGATGATCGCCAGTT : 804027 200 : laThrThrLeuAsnLeuIleLeuValMetHisGlyAlaAlaLysPheMetValValAr : 218 .!|||!:!!!!||||||:!::!!:!!|||||||||:!!||||||||| |||:!!|| ysThrSerPheAsnLeuValValIleMetHisGlySerAlaLysPheAlaValLeuAr 804026 : GCACCAGTTTCAATCTGGTGGTAATAATGCACGGCTCGGCCAAGTTTGCTGTTCTACG : 803970 219 : gLysAsnIleGluSerLeuLysSerAsnSerGluAsnSerIleThrPheIle<->Asp : 236 |!:!!..:!:|||:!!|||!...!!!!...! ||||||! !||| !!!!: ||| gArgArgLeuGluAlaLeuSerGlyLysAspProAsnSerThrThrValMetGlyAsp 803969 : GAGAAGATTGGAGGCTCTCAGCGGCAAGGATCCTAATTCTACTACTGTTATGGGGGAT : 803913 237 : CysValArgGlyHisGlnAspAlaIle{Le} >>>> Target Intron 3 >>>> : 246 ! |||! ! !!||||||!!:||||||{ } 696 bp LeuValIleArgHisGlnGluAlaIle{Gl}++ 803912 : TTAGTGATTCGCCACCAGGAAGCAATA{GA}gt......................... : 803879 247 : {u}PheAlaGluArgValGluAsnThrIleAsnValLeuValLeuGlyGlnPheVa : 264 {!}!:!|||!!: !:!!|||!..! !||||||||||||!.!|||||||||||||| ++{u}TyrAlaAspAlaLeuGluArgIleIleAsnValLeuAlaLeuGlyGlnPheVa 803878 : ag{G}TACGCAGATGCACTGGAAAGGATCATAAATGTTCTGGCTTTGGGACAATTCGT : 803133 265 : lIleSerThrGlyLeuValCysPheAlaGlyPheGlnIleThrGlu >>>> Targe : 280 ||||||||||||||||:!!||||||||||||||||||||||||..! lIleSerThrGlyLeuIleCysPheAlaGlyPheGlnIleThrSer++ 803132 : CATTAGCACAGGTCTGATCTGCTTCGCGGGATTCCAGATCACCTCGgt.......... : 803083 281 : t Intron 4 >>>> MetAlaGluAspArgGlyGlnLeuMetLysTyrThrSerPh : 293 61 bp ||| !||||||!:!|||!:!||||||||||||:!!!!!|| ++MetMetGluAspLysGlyArgLeuMetLysTyrSerThrPh 803082 : ...............agATGATGGAGGATAAAGGACGGCTGATGAAATATTCCACCTT : 802985 294 : eLeuAsnSerAlaIlePheGluLeuPheLeuPheSerTyrSerGlyAsnGluLeuLeu : 312 ||||||||||||||||.!!|||||||||:!!||||||!:!|||||||||! |||:!! eLeuAsnSerAlaIleLeuGluLeuPheMetPheSerPheSerGlyAsnGlyLeuIle 802984 : CTTGAACTCCGCCATTCTCGAGCTGTTCATGTTCAGCTTCAGCGGAAACGGCCTGATA : 802928 313 : ThrGlu >>>> Target Intron 5 >>>> SerAspAlaIleSerGlnSerCy : 322 !||| 1119 bp |||||||||:!!.!!:!!|||.. AspGlu++ ++SerAspAlaValGlyGluSerAl 802927 : GACGAGgt.........................agAGCGACGCGGTAGGCGAGTCAGC : 801779 323 : sTyrAlaSerAsnTrpValGlyThrSerPheAlaLysSerMetGlnIleValMetThr : 341 !|||!.!|||...|||:!!|||!:! !!|||:!!:!!|||:!:||||||:!!|||! ! aTyrGlySerGlyTrpIleGlySerArgPheSerGlnSerLeuGlnIleMetMetMet 801778 : TTATGGCAGCGGATGGATCGGTAGTCGTTTCTCTCAGAGTCTTCAGATCATGATGATG : 801722 342 : ArgSerLeuSerProCysLysIleThrAlaValLysPheTyrAspMetSerLeuAlaA : 361 |||||| !! !||||||||||||||||||!.!|||||||||..!|||||||||! !! ArgSerArgIleProCysLysIleThrAlaAlaLysPheTyrSerMetSerLeuGluS 801721 : CGCTCGAGGATACCATGCAAGATAACCGCCGCTAAATTCTACAGCATGTCCTTGGAGA : 801662 362 : snPheSerSer >>>> Target Intron 6 >>>> IlePheSerPheSerPhe : 370 :!||||||!.! 151 bp :!!.!!||| |||||| erPheSerLys++ ++ValLeuSerThrSerPhe 801661 : GCTTCTCGAAGgt.........................agGTACTCAGCACGTCTTTC : 801484 371 : SerTyrLeuThrValLeu : 376 ||||||!!!||||||||| SerTyrPheThrValLeu 801483 : TCCTACTTCACGGTCCTC : 801464 vulgar: gi|452887635|gb|AGG17934.1| 5 376 . KQ414667.1 806015 801463 - 986 M 43 129 5 0 2 I 0 680 3 0 2 M 103 309 5 0 2 I 0 724 3 0 2 M 5 15 G 1 0 M 78 234 G 0 3 M 10 30 S 0 2 5 0 2 I 0 692 3 0 2 S 1 1 M 33 99 5 0 2 I 0 57 3 0 2 M 35 105 5 0 2 I 0 1115 3 0 2 M 50 150 5 0 2 I 0 147 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414667.1 exonerate:protein2genome:local gene 801464 806015 986 - . gene_id 1 ; sequence gi|452887635|gb|AGG17934.1| ; gene_orientation + KQ414667.1 exonerate:protein2genome:local cds 805887 806015 . - . KQ414667.1 exonerate:protein2genome:local exon 805887 806015 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 805885 805886 . - . intron_id 1 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 805203 805886 . - . intron_id 1 KQ414667.1 exonerate:protein2genome:local splice3 805203 805204 . - . intron_id 0 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 804894 805202 . - . KQ414667.1 exonerate:protein2genome:local exon 804894 805202 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 804892 804893 . - . intron_id 2 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 804166 804893 . - . intron_id 2 KQ414667.1 exonerate:protein2genome:local splice3 804166 804167 . - . intron_id 1 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 803882 804165 . - . KQ414667.1 exonerate:protein2genome:local exon 803882 804165 . - . insertions 3 ; deletions 1 KQ414667.1 exonerate:protein2genome:local splice5 803880 803881 . - . intron_id 3 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 803186 803881 . - . intron_id 3 KQ414667.1 exonerate:protein2genome:local splice3 803186 803187 . - . intron_id 2 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 803086 803185 . - . KQ414667.1 exonerate:protein2genome:local exon 803086 803185 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 803084 803085 . - . intron_id 4 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 803025 803085 . - . intron_id 4 KQ414667.1 exonerate:protein2genome:local splice3 803025 803026 . - . intron_id 3 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 802920 803024 . - . KQ414667.1 exonerate:protein2genome:local exon 802920 803024 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 802918 802919 . - . intron_id 5 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801801 802919 . - . intron_id 5 KQ414667.1 exonerate:protein2genome:local splice3 801801 801802 . - . intron_id 4 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801651 801800 . - . KQ414667.1 exonerate:protein2genome:local exon 801651 801800 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 801649 801650 . - . intron_id 6 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801500 801650 . - . intron_id 6 KQ414667.1 exonerate:protein2genome:local splice3 801500 801501 . - . intron_id 5 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801464 801499 . - . KQ414667.1 exonerate:protein2genome:local exon 801464 801499 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local similarity 801464 806015 986 - . alignment_id 1 ; Query gi|452887635|gb|AGG17934.1| ; Align 806016 6 129 ; Align 805203 49 309 ; Align 804166 152 15 ; Align 804151 158 234 ; Align 803914 236 30 ; Align 803185 247 99 ; Align 803025 280 105 ; Align 801801 315 150 ; Align 801500 365 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|119888030|gb|ABM05966.1| olfactory receptor [Microplitis mediator] Target: KQ414731.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold204, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1200 Query range: 0 -> 356 Target range: 591043 -> 587873 1 : MetMetLysThrLysHisGlnGlyLeuValAlaAspLeuMetProAsnIleArgLeuM : 20 ||||||||| !|||!!.|||||||||||||||||||||||||||||||||!:!|||| MetMetLysPheLysGlnGlnGlyLeuValAlaAspLeuMetProAsnIleLysLeuM 591043 : ATGATGAAGTTCAAGCAACAGGGGCTAGTCGCGGACTTAATGCCCAACATAAAGCTGA : 590986 21 : etGlnIleSerGlyHisPheMetPheAsnTyrTyrGlyGlu<->GlyLysLysLeuMe : 38 ||:!! !||||||||||||:!!|||||||||||| !!!: !.!! !||| !|| etLysAlaSerGlyHisPheLeuPheAsnTyrTyrThrAspAsnAlaThrLysGlyMe 590985 : TGAAAGCCAGTGGGCATTTTTTGTTCAACTATTACACTGACAATGCTACGAAGGGTAT : 590929 39 : tHisLysIleTyrCysSer >>>> Target Intron 1 >>>> ValHisLeuP : 48 ||||||||||||||||! ! 419 bp ||||||||| tHisLysIleTyrCysIle++ ++ValHisLeuV 590928 : GCACAAAATCTACTGCATCgt.........................agGTGCATCTAG : 590480 49 : heLeuIleLeuLeuGlnPheGlyPheValAlaIleAsnLeuValLysGluLysGluAs : 67 ! |||||||||:!!|||||||||||| !!.!|||||||||:!! !|||!..!!:|| alLeuIleLeuIleGlnPheGlyPheCysGlyIleAsnLeuMetLeuGluSerAspAs 590479 : TACTGATCCTAATACAGTTCGGATTCTGCGGTATAAACCTAATGTTGGAGAGCGACGA : 590423 68 : pValAspAspLeuThrAlaAsnThrIleThrIleLeuPhePheLeuHisThrLeuIle : 86 |||||||!!:|||||||||||||||||||||!!:||||||||| !|||!:!:!!:!! pValAspGluLeuThrAlaAsnThrIleThrMetLeuPhePheThrHisSerValVal 590422 : CGTTGACGAACTGACGGCGAACACGATCACGATGCTGTTCTTCACGCACAGCGTGGTT : 590366 87 : LysIleValTyrPheAlaAlaArgSerLysLeuPheTyrArgThrLeuAlaIleTrpA : 106 |||:!!! !|||||||||!.!||||||||||||||||||||||||!!!!.!||||||| LysLeuGlyTyrPheAlaValArgSerLysLeuPheTyrArgThrPheGlyIleTrpA 590365 : AAGCTCGGTTATTTCGCCGTCAGGAGCAAGTTGTTCTACAGAACCTTCGGTATTTGGA : 590306 107 : snAsnProAsnSerHisProLeuPheAlaGluSerAsnAlaArgTyrHisSerIleAl : 125 ||||||||||||||||||||||||||||||||||||||||||||||||||..!||||| snAsnProAsnSerHisProLeuPheAlaGluSerAsnAlaArgTyrHisGlnIleAl 590305 : ATAATCCGAACAGCCATCCTCTGTTCGCCGAGAGTAACGCGCGTTATCATCAGATTgc : 590249 126 : aLeuThrLysValArgArgLeuLeuPheCysValGlyAlaAlaThrValAlaThrThr : 144 |::: |||:::||| ||||||.!...!||| !!.!.!!!:!||| !|||..! aValLysLysMetArgIleLeuLeuMetAlaValMetGlyThrSerValLeuThrVal 590248 : tgtgaaaaaaatgagaatacTGTTGATGGCCGTCATGGGAACCAGTGTGCTCACCGTC : 590192 145 : IleSerTrpThrThrLeuThrPhePheGluAspProHisValGluArgLeuAsnLysG : 164 |||||||||||||||:!!||||||.!!! ||| !! !:!! !:!!:!! ! IleSerTrpThrThrIleThrPheIleGlyAspSerValLysLysValValAspProV 590191 : ATTTCTTGGACCACAATCACGTTCATCGGTGATTCCGTGAAGAAGGTCGTCGATCCTG : 590132 165 : luThrAsnGluThrTyrIleGluGlu >>>> Target Intron 2 >>>> Ile : 173 ||||||||||||! !.!!! ||| 672 bp :!! alThrAsnGluThrSerPheValGlu++ ++Val 590131 : TTACCAACGAAACCTCTTTTGTCGAggt.........................agGTA : 589433 174 : ProArgLeuLeuValArgSerTrpTyrProPheAspAlaArgHisGlyValAlaHisI : 193 |||||||||:!!||||||||||||||||||!:!||| !!!!!||||||:!!||||||| ProArgLeuMetValArgSerTrpTyrProTyrAspProSerHisGlyMetAlaHisI 589432 : CCAAGATTGATGGTGCGTTCTTGGTATCCGTACGACCCCAGCCACGGGATGGCTCACA : 589373 194 : leGlyMetLeuIleTyrGlnIleTyrTrpLeuPheIleCysThrValAspAlaAsnSe : 212 || !! !|||:!!!:!|||:!!|||||||||.!..!! !! !!.!||||||||| leLeuThrLeuValPheGlnLeuTyrTrpLeuIlePheThrIleAlaAspAlaAsnLe 589372 : TTCTTACGTTAGTATTCCAACTTTACTGGCTGATATTTACCATAGCAGACGCGAATCT : 589316 213 : rIleAspValLeuPheCysSerTrpLeuLeuPheAlaCysGluGlnLeuGlnHisLeu : 231 !:!!||||||||||||||||||||||||||||||||||||||||||:!!||||||||| uLeuAspValLeuPheCysSerTrpLeuLeuPheAlaCysGluGlnIleGlnHisLeu 589315 : CCTAGACGTGCTGTTCTGTTCGTGGCTCCTCTTCGCTTGTGAACAAATTCAGCATCTA : 589259 232 : LysAlaIleMetLysProLeuMetGluLeuSerAlaThrLeuAspThrValValProA : 251 ||| !|||||||||||||||||||||!!!|||||||||||||||||||||||||||| LysAsnIleMetLysProLeuMetGluPheSerAlaThrLeuAspThrValValProA 589258 : AAGAATATCATGAAACCACTGATGGAATTCAGCGCGACCCTGGACACTGTTGTACCAA : 589199 252 : snSerGlyGluLeuPheLys >>>> Target Intron 3 >>>> AlaGly<-> : 260 |||||||||||||||||||| 1002 bp |||||| snSerGlyGluLeuPheLys++ ++AlaGlyAla 589198 : ACAGTGGAGAATTGTTTAAAgt.........................agGCCGGTGCG : 588170 261 : SerAlaAspHisLeuArgAspAsnAsp<->GlyValProAlaGluProAlaMetAsnG : 278 !:! !|||||| !!:!|||.!.||| ! !|||||| !||| ! .!. AsnMetAspHisGlyLysAspGlnAspLeuProProProAlaThrProHisProGlnT 588169 : AACATGGATCACGGGAAGGATCAAGATCTACCACCGCCAGCCACGCCACATCCTCAAA : 588110 279 : lyAspAsnMetLeuAspMetAspLeuArgGlyIleTyrSerAsnArgGlnAspPheTh : 297 !||||||||||||||||||||||||||||||||||||||||||||| !|||!:!|| hrAspAsnMetLeuAspMetAspLeuArgGlyIleTyrSerAsnArgThrAspTyrTh 588109 : CCGATAATATGCTGGACATGGATCTTCGAGGAATATACAGCAACAGGACAGATTACAC : 588053 298 : rAlaThrPheArgProThrAlaGlyThrGlnTyrAsnGlyGlyValGlyProAsnGln : 316 |.!!||||||||| !!|||||||||.!! !:!||||||||||||||||||||| ! rThrThrPheArgAlaThrAlaGlyAlaThrPheAsnGlyGlyValGlyProAsnGly 588052 : GACTACCTTCCGGGCAACTGCTGGCGCGACCTTTAACGGCGGTGTAGGACCAAATGGA : 587996 317 : LeuThrLysLysGlnGluMetLeuValArgSerAlaIleLysTyrTrpValGluArgH : 336 ||||||:!!||||||||||||||||||||||||||||||||||||||||||||||||| LeuThrGlnLysGlnGluMetLeuValArgSerAlaIleLysTyrTrpValGluArgH 587995 : TTGACACAGAAACAGGAGATGTTGGTCAGAAGTGCCATCAAATATTGGGTAGAGAGGC : 587936 337 : isLysHisIleValArgLeuValThrAlaIleGlyAspAlaTyrGlyValAlaLeuLe : 355 |||||||||||||||||! !||| !!.!.!! !|||...::: !|| isLysHisIleValArg***ValHisValPhePheAspValPheThrPheLeuGlnLe 587935 : ACAAACACATTGTCAGGTAAGTACATGTTTTCTTCGAtgttttcacatttcttcAACT : 587879 356 : uPhe : 356 |||| uPhe 587878 : CTTT : 587874 vulgar: gi|119888030|gb|ABM05966.1| 0 356 . KQ414731.1 591043 587873 - 1200 M 33 99 G 0 3 M 11 33 5 0 2 I 0 415 3 0 2 M 128 384 5 0 2 I 0 668 3 0 2 M 85 255 5 0 2 I 0 998 3 0 2 M 2 6 G 0 3 M 9 27 G 0 3 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414731.1 exonerate:protein2genome:local gene 587874 591043 1200 - . gene_id 1 ; sequence gi|119888030|gb|ABM05966.1| ; gene_orientation + KQ414731.1 exonerate:protein2genome:local cds 590909 591043 . - . KQ414731.1 exonerate:protein2genome:local exon 590909 591043 . - . insertions 3 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 590907 590908 . - . intron_id 1 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 590490 590908 . - . intron_id 1 KQ414731.1 exonerate:protein2genome:local splice3 590490 590491 . - . intron_id 0 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 590106 590489 . - . KQ414731.1 exonerate:protein2genome:local exon 590106 590489 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 590104 590105 . - . intron_id 2 ; splice_site "gt" KQ414731.1 exonerate:protein2genome:local intron 589434 590105 . - . intron_id 2 KQ414731.1 exonerate:protein2genome:local splice3 589434 589435 . - . intron_id 1 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 589179 589433 . - . KQ414731.1 exonerate:protein2genome:local exon 589179 589433 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 589177 589178 . - . intron_id 3 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 588177 589178 . - . intron_id 3 KQ414731.1 exonerate:protein2genome:local splice3 588177 588178 . - . intron_id 2 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 587874 588176 . - . KQ414731.1 exonerate:protein2genome:local exon 587874 588176 . - . insertions 6 ; deletions 0 KQ414731.1 exonerate:protein2genome:local similarity 587874 591043 1200 - . alignment_id 1 ; Query gi|119888030|gb|ABM05966.1| ; Align 591044 1 99 ; Align 590942 34 33 ; Align 590490 45 384 ; Align 589434 173 255 ; Align 588177 258 6 ; Align 588168 260 27 ; Align 588138 269 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|119888030|gb|ABM05966.1| olfactory receptor [Microplitis mediator] Target: KQ414731.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold204, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 588 Query range: 340 -> 477 Target range: 582363 -> 580207 341 : ArgLeuValThrAlaIleGlyAspAlaTyrGlyValAlaLeuLeuPheHisMetLeuI : 360 ||||||||||||:!!:!!|||||||||||||||||||||||||||.!.||||||||| ArgLeuValThrSerValGlyAspAlaTyrGlyValAlaLeuLeuLeuHisMetLeuA 582363 : agATTGGTCACTTCAGTCGGTGATGCTTACGGTGTTGCTCTACTGCTGCACATGTTAG : 582306 361 : leThrThrIleThrLeuThrLeuLeuAlaTyrGlnAlaThrLys >>>> Target : 375 !|||||||||||||||||||||||||||||||||||||||||| 74 laThrThrIleThrLeuThrLeuLeuAlaTyrGlnAlaThrLys++ 582305 : CCACCACCATCACCTTAACTTTGCTTGCTTACCAAGCAACGAAGgt............ : 582259 376 : Intron 1 >>>> ValAsnGlyValAsnValTyrAlaAlaSerThrIleGlyTyrL : 389 2 bp :!!:!!||||||:!!..!||||||||||||..!|||||||||| ++IleHisGlyValAspThrTyrAlaAlaSerValIleGlyTyrL 582258 : .............agATACACGGTGTCGATACATACGCAGCATCGGTAATAGGCTACT : 581477 390 : euLeuTyrSerLeuGlyGlnValPheLeuPheCysIlePheGlyAsnArgLeuIleGl : 408 ||||||||||||||||||||||||||:!!.!!|||||||||||||||||||||||||| euLeuTyrSerLeuGlyGlnValPheMetLeuCysIlePheGlyAsnArgLeuIleGl 581476 : TGTTGTACTCCCTGGGACAAGTTTTCATGCTCTGCATATTTGGAAACCGTCTCATTGA : 581420 409 : uGlu >>>> Target Intron 2 >>>> SerSerSerValMetGluAlaAlaT : 418 |||| 533 bp ||||||||||||||||||||||||| uGlu++ ++SerSerSerValMetGluAlaAlaT 581419 : AGAGgt.........................agAGCTCATCTGTGATGGAAGCCGCTT : 580857 419 : yrSerCysHisTrpTyrAspGlySerGluGluAlaLysThrPheValGlnIleValCy : 437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| yrSerCysHisTrpTyrAspGlySerGluGluAlaLysThrPheValGlnIleValCy 580856 : ACTCTTGTCACTGGTACGACGGGTCAGAGGAGGCTAAGACTTTCGTACAAATCGTCTG : 580800 438 : sGlnGlnCysGlnLysAlaMetSerIleSerGlyAlaLysPhePheThrValSerLeu : 456 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| sGlnGlnCysGlnLysAlaMetSerIleSerGlyAlaLysPhePheThrValSerLeu 580799 : TCAACAGTGTCAAAAAGCGATGTCGATTTCAGGCGCGAAATTCTTCACCGTCTCTTTG : 580743 457 : AspLeuPheAlaSer >>>> Target Intron 3 >>>> ValLeuGlyAlaVa : 466 ||||||||||||||| 470 bp ||||||||||||:! AspLeuPheAlaSer++ ++ValLeuGlyAlaMe 580742 : GATCTTTTCGCTTCGgt.........................agGTGCTGGGAGCTAT : 580243 467 : lValThrTyrPheMetValLeuValGlnLeuLys : 477 !||||||||||||||||||||||||||||||||| tValThrTyrPheMetValLeuValGlnLeuLys 580242 : GGTCACATACTTCATGGTGTTGGTGCAACTGAAG : 580208 vulgar: gi|119888030|gb|ABM05966.1| 340 477 . KQ414731.1 582363 580207 - 588 M 34 102 5 0 2 I 0 738 3 0 2 M 35 105 5 0 2 I 0 529 3 0 2 M 52 156 5 0 2 I 0 466 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414731.1 exonerate:protein2genome:local gene 580208 582363 588 - . gene_id 2 ; sequence gi|119888030|gb|ABM05966.1| ; gene_orientation + KQ414731.1 exonerate:protein2genome:local cds 582262 582363 . - . KQ414731.1 exonerate:protein2genome:local exon 582262 582363 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 582260 582261 . - . intron_id 1 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 581520 582261 . - . intron_id 1 KQ414731.1 exonerate:protein2genome:local splice3 581520 581521 . - . intron_id 0 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 581415 581519 . - . KQ414731.1 exonerate:protein2genome:local exon 581415 581519 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 581413 581414 . - . intron_id 2 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 580882 581414 . - . intron_id 2 KQ414731.1 exonerate:protein2genome:local splice3 580882 580883 . - . intron_id 1 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 580726 580881 . - . KQ414731.1 exonerate:protein2genome:local exon 580726 580881 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local splice5 580724 580725 . - . intron_id 3 ; splice_site "GT" KQ414731.1 exonerate:protein2genome:local intron 580256 580725 . - . intron_id 3 KQ414731.1 exonerate:protein2genome:local splice3 580256 580257 . - . intron_id 2 ; splice_site "AG" KQ414731.1 exonerate:protein2genome:local cds 580208 580255 . - . KQ414731.1 exonerate:protein2genome:local exon 580208 580255 . - . insertions 0 ; deletions 0 KQ414731.1 exonerate:protein2genome:local similarity 580208 582363 588 - . alignment_id 2 ; Query gi|119888030|gb|ABM05966.1| ; Align 582364 341 102 ; Align 581520 375 105 ; Align 580882 410 156 ; Align 580256 462 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887641|gb|AGG17937.1| olfactory receptor 4 [Microplitis mediator] Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 132 -> 218 Target range: 887519 -> 887774 133 : ValTyrMetValThrValLeuPheMetThrGluProIleValGluGlnThrPhePheL : 152 |||! !!!: !.!!..!:!!!:!.!.||| !!|||!.!! ! ! !||| : ValCysIleSerAlaThrMetTyrPheThrLeuSerIleAlaValValIlePheGluG 887520 : GTCTGCATATCGGCGACAATGTATTTCACACTTTCGATTGCCGTGGTCATCTTCGAGG : 887577 153 : ysLeuPheGlnAsnGluThrIleProLysArgPheSerIleProIleTyrTrpLysTh : 171 !!||| !:!!|||..!||| !|||!:!!:! ! ! !|||:!: ! !:: ! ! luLeuAsnLysAsnArgThrGluProArgGlnThrLeuTyrProValGluTyrHisIl 887578 : AATTGAATAAAAACCGGACCGAACCCAGACAGACTCTATACCCAGTGGAGTACCACAT : 887634 172 : rProAspIleGluLysTyrTyrTyrTyrLeuIleSerPheGlnThrLeuAsnThrAsn : 190 ! ||| |||||||||:::||| :!!! !:!! ! ! !:::||| e---AspSerGluLysTyrPheTyrLeuIleThrAlaHisCysTyrAlaSerThrVal 887635 : C---gacagtgaaaaatatttttacctgATTACAGCTCATTGTTACGCCTCGACAGTA : 887688 191 : PheIleIleSerIleThrCysAlaSerAspAlaMetPheIleAsnLeuLeuGlnHisV : 210 .!!:!!:!: ! !||| !!.! !|||.!!|||!:!||| !|||:!!||||||! LeuLeuLeuLeuGlnThrValValHisAspThrMetTyrIleValLeuValGlnHisG 887689 : CTTCTTCTGCTTCAAACTGTCGTACACGACACAATGTACATTGTTCTGGTCCAACATG : 887748 211 : alThrGlyLeuPheSerValThrGly : 218 ! !!.!||||||:!!||||||||| lyCysAlaLeuPheAlaValThrGly 887749 : GCTGCGCTTTATTCGCAGTTACGGGG : 887774 vulgar: gi|452887641|gb|AGG17937.1| 132 218 . KQ414735.1 887519 887774 + 100 M 39 117 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 887520 887774 100 + . gene_id 1 ; sequence gi|452887641|gb|AGG17937.1| ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 887520 887774 . + . KQ414735.1 exonerate:protein2genome:local exon 887520 887774 . + . insertions 0 ; deletions 1 KQ414735.1 exonerate:protein2genome:local similarity 887520 887774 100 + . alignment_id 1 ; Query gi|452887641|gb|AGG17937.1| ; Align 887520 133 117 ; Align 887637 173 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722542|gb|AKO90014.1| odorant receptor 50 [Microplitis mediator] Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 153 -> 215 Target range: 887588 -> 887774 154 : AsnGluSerArgProLysValTyrLeuTyrProAlaGluTyrPheValAspGlnAspL : 173 |||..!!!!..!|||!:! ! !|||||||||!.!|||||| !:!!|||...:::| AsnArgThrGluProArgGlnThrLeuTyrProValGluTyrHisIleAspSerGluL 887589 : AACCGGACCGAACCCAGACAGACTCTATACCCAGTGGAGTACCACATCgacagtgaaa : 887646 174 : ysTyrSerThrTyrIleTyrIleHisGlyTyrMetAlaLeuProIleThrMetThrLe : 192 ||||| ||| !||| !!||| :!! ! !:!! !:!! !! ysTyrPheTyrLeuIleThrAlaHisCysTyrAlaSerThrValLeuLeuLeuLeuGl 887647 : aatatttttacctgATTACAGCTCATTGTTACGCCTCGACAGTACTTCTTCTGCTTCA : 887703 193 : uCysThrAlaTyrAspPheLeuTyrSerAlaCysGlyHisHisValCysSerMetPhe : 211 ! !..!!.!:!!||| :!!|||! !!.! ! !!!.|||! !|||:!!:!:||| nThrValValHisAspThrMetTyrIleValLeuValGlnHisGlyCysAlaLeuPhe 887704 : AACTGTCGTACACGACACAATGTACATTGTTCTGGTCCAACATGGCTGCGCTTTATTC : 887760 212 : LysIleAlaGly : 215 !:!!.!!||| AlaValThrGly 887761 : GCAGTTACGGGG : 887774 vulgar: gi|861722542|gb|AKO90014.1| 153 215 . KQ414735.1 887588 887774 + 108 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 887589 887774 108 + . gene_id 1 ; sequence gi|861722542|gb|AKO90014.1| ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 887589 887774 . + . KQ414735.1 exonerate:protein2genome:local exon 887589 887774 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 887589 887774 108 + . alignment_id 1 ; Query gi|861722542|gb|AKO90014.1| ; Align 887589 154 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887641|gb|AGG17937.1| olfactory receptor 4 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 154 -> 218 Target range: 17991 -> 17802 155 : GlnAsnGluThrIleProLysArgPheSerIleProIleTyrTrpLysThrProAspIle : 174 |||||| !||| ! ! !!:!||| !|||||| !|||!:: ..! !!!::!! GlnAsnIleThrProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGluVal 17991 : CAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTA : 17934 175 : GluLysTyrTyrTyrTyrLeuIleSerPheGlnThrLeuAsnThrAsnPheIleIleSer : 194 ||| ||||||||||||:!!||| ! ! !|||! !!..! ! .!!:!!:!: ! Glu---TyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIleLeuIleValValVal 17933 : GAA---TACTATTATTACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTG : 17877 195 : IleThrCysAlaSerAspAlaMetPheIleAsnLeuLeuGlnHisValThrGlyLeuPhe : 214 :!: !||||||!!!|||.!!! !:!!!: |||:!!||||||..! !||||||||| ValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPhe 17876 : GTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTC : 17817 215 : SerValThrGly : 218 :!!|||.!!||| AlaValAlaGly 17816 : GCCGTGGCCGGG : 17803 vulgar: gi|452887641|gb|AGG17937.1| 154 218 . KQ414772.1 17991 17802 - 112 M 21 63 G 1 0 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17803 17991 112 - . gene_id 1 ; sequence gi|452887641|gb|AGG17937.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17803 17991 . - . KQ414772.1 exonerate:protein2genome:local exon 17803 17991 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 17803 17991 112 - . alignment_id 1 ; Query gi|452887641|gb|AGG17937.1| ; Align 17992 155 63 ; Align 17929 177 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887643|gb|AGG17938.1| olfactory receptor 5 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 122 -> 222 Target range: 14178 -> 13878 123 : PheValLeuValTyrSerIleTrpIleTyrValIleAlaIleLeuPheLeuValPheLeu : 142 !:!:!!:!! !||||||||| !! ! :!!:!!..!:!!:!!.!.!!!||| ! ! TyrIleValLysTyrSerIleValAsnAlaIleValCysValIleLeuPheValThrThr 14178 : TACATTGTCAAATATTCGATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGACCACG : 14121 143 : ProLeuIleProValThrLeuAspIleIleLeuProLeuAsnGluSerArgProLysIle : 162 |||:!!! !||| !! !|||||||||:!!|||||| !|||||||||||| ! ! ProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAla 14120 : CCGGTGACACCGCATATTTTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCG : 14061 163 : GluLeuTyrHisThrAspTyrLeuPheGlyProValLysTyrSerTrpValIleSerLeu : 182 ! :!!|||! .!! !!|||!!! !! ! ! !||||||..! ! !|||! ! ! TyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThr 14060 : TACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACG : 14001 183 : HisGlnCysIleIleSerProPheProThrIleIleIleIleAlaThrGlySerLeuTyr : 202 |||..!... !:!:! !! ! ! ! ! !:!: !:!!||| !! !!!! !||| HisMetAlaSerValIleLeuValValPheTyrValTyrValAlaCysAspThrSerTyr 14000 : CACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTAC : 13941 203 : CysAsnCysCysGlnHisAlaCysGlyMetPheGluValIleGlyTyrArgLeuLysAsn : 222 !! ! ||||||!.!||||||:!!!!.! ||| !||| :::::::::::: IleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly***LysIleArgSer 13940 : ATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaattcgatcg : 13881 vulgar: gi|452887643|gb|AGG17938.1| 122 222 . KQ414772.1 14178 13878 - 132 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13879 14178 132 - . gene_id 1 ; sequence gi|452887643|gb|AGG17938.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13879 14178 . - . KQ414772.1 exonerate:protein2genome:local exon 13879 14178 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13879 14178 132 - . alignment_id 1 ; Query gi|452887643|gb|AGG17938.1| ; Align 14179 123 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887643|gb|AGG17938.1| olfactory receptor 5 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 141 -> 215 Target range: 20547 -> 20325 142 : LeuProLeuIleProValThrLeuAspIleIleLeuProLeuAsnGluSerArgProLys : 161 :!!|||!!! !|||:!!! !||||||||| ! !|||||||||:!!!!!||| !::: ValProPheAlaProIleIleLeuAspIleTyrAlaProLeuAsnLysThrArgLysArg 20547 : GTGCCTTTCGCACCGATCATCTTGGACATTTACGCGCCACTGAACAAAACGAGAAAACGT : 20490 162 : IleGluLeuTyrHisThrAspTyrLeuPheGlyProValLysTyrSerTrpValIleSer : 181 :!: :!!|||! .!! !!|||! !.!.! !|||! !:!!|||! ! !:!!!!:! ! ValPheValTyrProAlaTyrTyrTrpMetAspProGluGlnTyrTyrMetIleMetIle 20489 : GTGTTCGTTTATCCAGCCTATTACTGGATGGATCCTGAGCAATACTACATGATAATGATA : 20430 182 : LeuHisGlnCysIleIleSerProPheProThrIleIleIleIleAlaThrGlySerLeu : 201 :!!||| ! .!!:!: ! !.!. ! !:!!|||.!! !||| !! !! ! ! IleHisIleMetPheValValIleMetValCysValIlePheCysAlaCysAspMetAsn 20429 : ATACACATAATGTTCGTGGTGATCATGGTCTGTGTCATATTCTGTGCTTGCGACATGAAC : 20370 202 : TyrCysAsnCysCysGlnHisAlaCysGlyMetPheGluVal : 215 ||| !!..! |||||||||||||||:!:!!.! ||| TyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaVal 20369 : TACGTGTACGCTGTGCAGCACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: gi|452887643|gb|AGG17938.1| 141 215 . KQ414772.1 20547 20325 - 117 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20547 117 - . gene_id 2 ; sequence gi|452887643|gb|AGG17938.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20547 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20547 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20326 20547 117 - . alignment_id 2 ; Query gi|452887643|gb|AGG17938.1| ; Align 20548 142 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887643|gb|AGG17938.1| olfactory receptor 5 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 132 -> 217 Target range: 33667 -> 33412 133 : ValIleAlaIleLeuPheLeuValPheLeuProLeuIleProValThrLeuAspIleIle : 152 |||.!!..! !:!!.!.!!! !! !|||!!!|||||| ! !:!!|||:!! ValPheCysTyrIleMetPheSerSerAlaProPheIleProHisPheIleAspValAla 33667 : GTGTTTTGCTACATCATGTTCAGCTCGGCGCCTTTTATACCGCATTTTATCGATGTTGCG : 33610 153 : LeuProLeuAsnGluSerArgProLysIleGluLeuTyrHisThrAspTyrLeuPheGly : 172 ||| !! !|||||||||||| ! !! ! !:!!|||! !.!! !!||| !.!!! ! LeuSerLysAsnGluSerArgLysLeuSerLeuMetTyrProAlaTyrTyrGlyIleAsp 33609 : TTGTCGAAAAACGAGTCACGAAAATTAAGTTTGATGTACCCTGCCTATTACGGCATTGAC : 33550 173 : ProValLysTyrSerTrpValIleSerLeuHisGlnCysIleIleSerProPheProThr : 192 ! !! |||||| ::: ::: !|||..! ! ! !.!! !! ! ! GlnAspLysTyrTyrTyrTyrLeuMetAlaHisMetMetSerAlaGlyAlaAlaValPhe 33549 : CAGGacaagtattattattatctaatgGCTCACATGATGAGCGCAGGGGCAGCGGTGTTT : 33490 193 : IleIleIleIleAlaThrGlySerLeuTyrCysAsnCysCysGlnHisAlaCysGlyMet : 212 .!!:!!.!!!!::!! !! !!!!:!!||| ||| ! !|||||||||||||||:!! PheValPheMetSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeu 33489 : TTCGTATTTATGTCCTGCGACACGATTTATATGAATATCGTTCAACACGCGTGCGGATTG : 33430 213 : PheGluValIleGly : 217 !!. :!! !||| LeuPheIleSerGly 33429 : TTGTTCATTTCCGGG : 33413 vulgar: gi|452887643|gb|AGG17938.1| 132 217 . KQ414772.1 33667 33412 - 100 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33413 33667 100 - . gene_id 3 ; sequence gi|452887643|gb|AGG17938.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33413 33667 . - . KQ414772.1 exonerate:protein2genome:local exon 33413 33667 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 33413 33667 100 - . alignment_id 3 ; Query gi|452887643|gb|AGG17938.1| ; Align 33668 133 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887639|gb|AGG17936.1| olfactory receptor 3 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 134 -> 216 Target range: 18045 -> 17802 135 : IleIleTyrIleMetAspProValLeuSerAlaIleValAsnIleIleSerLysSerAsn : 154 .!!:!:!:!|||...! ||| !! !!!! !:!:|||||| !!.!! !..!||| PheLeuPheIleGlnValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsn 18045 : TTCTTGTTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAAT : 17988 155 : AspSerMetProLeuLysPheSerValProMetArgPheIleMetPheAspGluGluLys : 174 !!! !|||:!!||| !:!!||| !!!:! !.!. !!||||||! !:!! IleThrProSerLeuGlnPheValIlePro---GlyTyrTyrPheValAspGluValGlu 17987 : ATAACGCCAAGTTTGCAATTCGTCATACCC---GGATATTACTTCGTCGACGAAGTAGAA : 17931 175 : TyrTyrTrpLeuLeuLeuIleLeuSerAsnThrCysValIlePheIleIleAsnValIle : 194 ||||||!::! !:!!:!!:!!! !.!!!.. ! :!!:!:.!!:!!:!: ||| ! TyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyr 17930 : TACTATTATTACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTAC : 17871 195 : IleCysCysAspValIlePheIleThrValValGlnHisValCysGlyIlePheAlaVal : 214 !..!||||||..!! !!:!!!:..!:!!|||||||||..!||||||:!:||||||||| CysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaVal 17870 : TGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTG : 17811 215 : ValGly : 216 !.!||| AlaGly 17810 : GCCGGG : 17803 vulgar: gi|452887639|gb|AGG17936.1| 134 216 . KQ414772.1 18045 17802 - 125 M 30 90 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17803 18045 125 - . gene_id 1 ; sequence gi|452887639|gb|AGG17936.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17803 18045 . - . KQ414772.1 exonerate:protein2genome:local exon 17803 18045 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 17803 18045 125 - . alignment_id 1 ; Query gi|452887639|gb|AGG17936.1| ; Align 18046 135 90 ; Align 17956 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887639|gb|AGG17936.1| olfactory receptor 3 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 120 -> 216 Target range: 29640 -> 29355 121 : PheLeuSerIleGlyTyrAlaAlaPheValAsnMetGlyValIleIleTyrIleMetAsp : 140 |||...||| ::!.!!||| !! !! !.!. !! !:!!|||!:!! ! ! PhePheSerSerArgPheThrAlaAsnGlyIlePheCysTyrValIlePheThrSerVal 29640 : tttttttcttcacgttTCACAGCAAATGGAATCTTCTGCTACGTTATATTCACCTCAGTG : 29583 141 : ProValLeuSerAlaIleValAsnIleIleSerLysSerAsnAspSerMetProLeuLys : 160 !!:!! ! !! !:!!:!!:!!:!!|||||| !!.!|||!!:||| !:!! AlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValGly 29582 : GCGATAACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTGGGC : 29523 161 : PheSerValProMetArgPheIleMetPheAspGluGluLysTyrTyrTrpLeuLeuLeu : 180 |||! ! !||| !!:! !:!: !!!:|||||| ! ||||||!::|||:!! ! PheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrTyrLeuMetGly 29522 : TTCATTTATCCTGCATACTACGGTCTTGACGAAGAGGAGCATTACTACTATCTGATGGGT : 29463 181 : IleLeuSerAsnThrCysValIlePheIleIleAsnValIleIleCysCysAspValIle : 200 !:!! !::!..! ..!:!! :!:.!! !||| !|||! !||||||..!||| HisMetLeuSerValIleThrVal---ValPhePheValTyrIleSerCysAspThrIle 29462 : CACATGCTTTCCGTGATAACCGTC---GTGTTTTTCGTCTACATCTCCTGTGACACGATC : 29406 201 : PheIleThrValValGlnHisValCysGlyIlePheAlaValValGly : 216 !:!!!:!.!||||||||||||!.!||||||:!!!!. !||| !||| TyrMetAsnValValGlnHisAlaCysGlyLeuLeuAsnValSerGly 29405 : TATATGAATGTCGTGCAACACGCGTGTGGATTATTGAACGTCTCTGGG : 29356 vulgar: gi|452887639|gb|AGG17936.1| 120 216 . KQ414772.1 29640 29355 - 115 M 68 204 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29356 29640 115 - . gene_id 2 ; sequence gi|452887639|gb|AGG17936.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29356 29640 . - . KQ414772.1 exonerate:protein2genome:local exon 29356 29640 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 29356 29640 115 - . alignment_id 2 ; Query gi|452887639|gb|AGG17936.1| ; Align 29641 121 204 ; Align 29437 190 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887639|gb|AGG17936.1| olfactory receptor 3 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 89 -> 216 Target range: 24554 -> 24176 90 : ArgArgLeuPheGluLysValArgGluAspTrpLysValProLysAsnAsnAspGluLys : 109 :::::::::|||::: !|||.!. !!::! ! ! !...::! :!! ! ! GlnLysIlePheGlnLeuGlnArgAsnArgPheIleAsnAspSerSerAlaAsnTyrPro 24554 : caaaaaatatttcaattgcaGCGTAATCGCTTCATAAACGATTCTTCTGCAAACTATCCA : 24497 110 : LeuValLeuGluSerTyrLeuLysMetGlyArgPheLeuSerIleGlyTyrAlaAlaPhe : 129 :!!:!! ! !||| !||| ::: ||| |||::: ! !|||||| ! IleIleThrLeuSerIleLeuIleIleIleThrPheSerSerLeuTyrValAlaAlaAsn 24496 : ATTATTACTTTGTCAATTCttattataattacattttcttctctataTGTCGCAGCAAAT : 24437 130 : ValAsnMetGlyValIleIleTyrIleMetAspProValLeuSerAlaIleValAsnIle : 149 ! !! !.!. !! !:!!:!!!:!! ! ! !!:!! ! !! !:!!:!!:!!:!! GlyIlePheCysTyrValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeu 24436 : GGAATCTTCTGCTACGTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTT : 24377 150 : IleSerLysSerAsnAspSerMetProLeuLysPheSerValProMetArgPheIleMet : 169 |||||| !!.!|||!!:||| !:!! |||! ! !||| !.!!:! !:!: IleSerProLysAsnGluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyVal 24376 : ATTTCGCCGAAAAACGAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTC : 24317 170 : PheAspGluGluLysTyrTyrTrpLeuLeuLeuIleLeuSerAsnThrCysValIlePhe : 189 !!!:|||||| ! ||||||!::|||:!! ! !:!! !::!..! ..!:!! AspGluGluGluHisTyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrVal--- 24316 : GACGAAGAGGAGCATTACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTC--- : 24257 190 : IleIleAsnValIleIleCysCysAspValIlePheIleThrValValGlnHisValCys : 209 :!:.!! !||| !|||! !||||||..!|||!:!!!:!.!:!!|||||||||!.!||| ValPhePheValTyrIleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCys 24256 : GTGTTTTTCGTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGT : 24200 210 : GlyIlePheAlaValValGly : 216 |||:!!!!. !:!! !||| GlyLeuLeuAsnLeuSerGly 24199 : GGATTATTGAACCTCTCTGGG : 24177 vulgar: gi|452887639|gb|AGG17936.1| 89 216 . KQ414772.1 24554 24176 - 115 M 99 297 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24177 24554 115 - . gene_id 3 ; sequence gi|452887639|gb|AGG17936.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24177 24554 . - . KQ414772.1 exonerate:protein2genome:local exon 24177 24554 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 24177 24554 115 - . alignment_id 3 ; Query gi|452887639|gb|AGG17936.1| ; Align 24555 90 297 ; Align 24258 190 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887639|gb|AGG17936.1| olfactory receptor 3 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 134 -> 216 Target range: 38012 -> 37769 135 : IleIleTyrIleMetAspProValLeuSerAlaIleValAsnIleIleSerLysSerAsn : 154 :!!|||!:!! ! ! !!:!! ! !! !:!!:!!:!!:!!|||||| !!.!||| ValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 38012 : GTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAAC : 37955 155 : AspSerMetProLeuLysPheSerValProMetArgPheIleMetPheAspGluGluLys : 174 !!:||| !:!! ! |||! ! !||| !!:! ! .!!|||||||||:!! GluSerArgGlyValAspPheIleTyrPro---AlaTyrTyrGlyLeuAspGluGluGlu 37954 : GAATCGCGTGGGGTTGACTTCATTTATCCT---GCATACTACGGTCTCGACGAGGAGGAA : 37898 175 : TyrTyrTrpLeuLeuLeuIleLeuSerAsnThrCysValIlePheIleIleAsnValIle : 194 :!!|||!:::!!|||:!! !! !! ! ! ! :!!! ! ! :!:.!! !||| ! HisTyrTyrIleLeuMetGlyHisMetLeuCysValIleThrValValPhePheValTyr 37897 : CATTATTACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTGTAC : 37838 195 : IleCysCysAspValIlePheIleThrValValGlnHisValCysGlyIlePheAlaVal : 214 |||! !||||||..!|||!:!!!:!:!:!!|||||||||!.!||||||:!!.!. !||| IleSerCysAspThrIleTyrMetSerIleValGlnHisAlaCysGlyLeuLeuAsnVal 37837 : ATCTCCTGTGACACGATCTACATGAGCATCGTTCAACACGCGTGCGGATTACTGAACGTC : 37778 215 : ValGly : 216 !||| SerGly 37777 : TCTGGG : 37770 vulgar: gi|452887639|gb|AGG17936.1| 134 216 . KQ414772.1 38012 37769 - 114 M 30 90 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37770 38012 114 - . gene_id 4 ; sequence gi|452887639|gb|AGG17936.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37770 38012 . - . KQ414772.1 exonerate:protein2genome:local exon 37770 38012 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 37770 38012 114 - . alignment_id 4 ; Query gi|452887639|gb|AGG17936.1| ; Align 38013 135 90 ; Align 37923 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887639|gb|AGG17936.1| olfactory receptor 3 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 135 -> 216 Target range: 42712 -> 42472 136 : IleTyrIleMetAspProValLeuSerAlaIleValAsnIleIleSerLysSerAsnAsp : 155 !!:!:!||| ! ||| !:!! !! !:!! !:!!:!!!!:! !..!!.!|||!!: MetPheIleSerAlaProTyrIleProHisValTyrAspValMetLeuSerLysAsnGlu 42712 : ATGTTTATCTCTGCGCCTTATATACCGCATGTATATGATGTTATGTTATCGAAAAACGAG : 42655 156 : SerMetProLeuLysPheSerValProMetArgPheIleMetPheAspGluGluLysTyr : 175 ||| !||| |||! ! !||| !!:! ! !!|||:!!!!:|||||| SerArgLysLeuGlyPheIleTyrPro---AlaTyrTyrGlyValAspGlnAspLysTyr 42654 : TCACGAAAGTTGGGTTTCATTTACCCT---GCCTATTATGGCGTTGATCAAGACAAGTAT : 42598 176 : TyrTrpLeuLeuLeuIleLeuSerAsnThrCysValIlePheIleIleAsnValIleIle : 195 |||!::! !:!!:!! !! !! !!..:!! ! ! !:!! ! :!:.!! !..!.!!||| TyrTyrTyrIleIleAlaHisMetThrSerGlyGlyLeuValValPhePheThrPheIle 42597 : TATTACTATATAATAGCTCACATGACATCTGGGGGCTTAGTGGTGTTTTTCACCTTTATC : 42538 196 : CysCysAspValIlePheIleThrValValGlnHisValCysGlyIlePheAlaValVal : 215 ! !||||||..!|||!:!!!:!.!:!!|||||||||!.!||||||:!:!!. !:!! ! SerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuLeuIleSer 42537 : TCCTGCGACACGATTTACATGAATATCGTGCAACACGCGTGCGGATTGTTGTTGATTTCT : 42478 216 : Gly : 216 ||| Gly 42477 : GGG : 42473 vulgar: gi|452887639|gb|AGG17936.1| 135 216 . KQ414772.1 42712 42472 - 110 M 29 87 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42473 42712 110 - . gene_id 5 ; sequence gi|452887639|gb|AGG17936.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42473 42712 . - . KQ414772.1 exonerate:protein2genome:local exon 42473 42712 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 42473 42712 110 - . alignment_id 5 ; Query gi|452887639|gb|AGG17936.1| ; Align 42713 136 87 ; Align 42626 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887639|gb|AGG17936.1| olfactory receptor 3 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 134 -> 216 Target range: 33655 -> 33412 135 : IleIleTyrIleMetAspProValLeuSerAlaIleValAsnIleIleSerLysSerAsn : 154 |||!!:!:!! ! !! ||| !!:!! !! !.!!:!!:!!:!! ! !..!!.!||| IleMetPheSerSerAlaProPheIleProHisPheIleAspValAlaLeuSerLysAsn 33655 : ATCATGTTCAGCTCGGCGCCTTTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAAC : 33598 155 : AspSerMetProLeuLysPheSerValProMetArgPheIleMetPheAspGluGluLys : 174 !!:||| !|||!..!!.! ! !||| !!:! ! .!!|||:!!!::||| GluSerArgLysLeuSerLeuMetTyrPro---AlaTyrTyrGlyIleAspGlnAspLys 33597 : GAGTCACGAAAATTAAGTTTGATGTACCCT---GCCTATTACGGCATTGACCAGGacaag : 33541 175 : TyrTyrTrpLeuLeuLeuIleLeuSerAsnThrCysValIlePheIleIleAsnValIle : 194 ||||||::: |||::: !! !! !! !:!...! ! ! :!:.!! !|||.!! TyrTyrTyrTyrLeuMetAlaHisMetMetSerAlaGlyAlaAlaValPhePheValPhe 33540 : tattattattatctaatgGCTCACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTT : 33481 195 : IleCysCysAspValIlePheIleThrValValGlnHisValCysGlyIlePheAlaVal : 214 !!:! !||||||..!|||!:!!!:!.!:!!|||||||||!.!||||||:!:!!. !:!! MetSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuPheIle 33480 : ATGTCCTGCGACACGATTTATATGAATATCGTTCAACACGCGTGCGGATTGTTGTTCATT : 33421 215 : ValGly : 216 !||| SerGly 33420 : TCCGGG : 33413 vulgar: gi|452887639|gb|AGG17936.1| 134 216 . KQ414772.1 33655 33412 - 104 M 30 90 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33413 33655 104 - . gene_id 6 ; sequence gi|452887639|gb|AGG17936.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33413 33655 . - . KQ414772.1 exonerate:protein2genome:local exon 33413 33655 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 33413 33655 104 - . alignment_id 6 ; Query gi|452887639|gb|AGG17936.1| ; Align 33656 135 90 ; Align 33566 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887639|gb|AGG17936.1| olfactory receptor 3 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 126 -> 214 Target range: 20586 -> 20325 127 : AlaAlaPheValAsnMetGlyValIleIleTyrIleMetAspProValLeuSerAlaIle : 146 .!!||| !:!! !:!: !!.! !|||!:!:!! ! ||| !! ! !! !||| ThrAlaHisLeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIle 20586 : ACAGCGCATTTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATC : 20529 147 : ValAsnIleIleSerLysSerAsnAspSerMetProLeuLysPheSerValProMetArg : 166 :!!:!!||| !:!! ! !||| ! !!!! !! ! !||| ! !||| ! LeuAspIleTyrAlaProLeuAsnLysThrArgLysArgValPheValTyrProAlaTyr 20528 : TTGGACATTTACGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTAT : 20469 167 : PheIleMetPheAspGluGluLysTyrTyrTrpLeuLeuLeuIleLeuSerAsnThrCys : 186 !:! ||| ||| |||:!!|||||| !:!!:!!:!!|||! !! !! ! TyrTrpMet---AspProGluGlnTyrTyrMetIleMetIleIleHisIleMetPheVal 20468 : TACTGGATG---GATCCTGAGCAATACTACATGATAATGATAATACACATAATGTTCGTG : 20412 187 : ValIlePheIleIleAsnValIleIleCysCysAspValIlePheIleThrValValGln : 206 ||||||.!.:!! ! !:!!.!! !..!||||||:!!! !!:!:!: !!.!|||||| ValIleMetValCysValIlePheCysAlaCysAspMetAsnTyrValTyrAlaValGln 20411 : GTGATCATGGTCTGTGTCATATTCTGTGCTTGCGACATGAACTACGTGTACGCTGTGCAG : 20352 207 : HisValCysGlyIlePheAlaVal : 214 |||!.!||||||:!!!!.|||||| HisAlaCysGlyLeuLeuAlaVal 20351 : CACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: gi|452887639|gb|AGG17936.1| 126 214 . KQ414772.1 20586 20325 - 101 M 43 129 G 1 0 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20586 101 - . gene_id 7 ; sequence gi|452887639|gb|AGG17936.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20586 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20586 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 20326 20586 101 - . alignment_id 7 ; Query gi|452887639|gb|AGG17936.1| ; Align 20587 127 129 ; Align 20458 171 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722542|gb|AKO90014.1| odorant receptor 50 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 134 -> 215 Target range: 29598 -> 29355 135 : ValValPheAlaSerIleProValLeuSerLysValLeuAspLeuIleAlaProLeuAsn : 154 |||:!!|||.!!|||:!: !!:!! ! !!:::|||||||||||||||:!!||| !||| ValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 29598 : GTTATATTCACCTCAGTGGCGATAACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAAC : 29541 155 : GluSerArgProLysValTyrLeuTyrProAlaGluTyrPheValAspGlnAspLysTyr : 174 ||||||||| ! !! !!:!:!!||||||||| ! ||| !:!!|||:!!!!::!!:!! GluSerArgGlyValGlyPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHis 29540 : GAATCGCGCGGAGTGGGCTTCATTTATCCTGCATACTACGGTCTTGACGAAGAGGAGCAT : 29481 175 : SerThrTyrIleTyrIleHisGlyTyrMetAlaLeuProIleThrMetThrLeuCysThr : 194 ! ! !|||:!: !||| ! ! !.!:!! !!:!!..!.!. !:!!! !! ! TyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIle 29480 : TACTACTATCTGATGGGTCACATGCTTTCCGTGATAACCGTCGTGTTTTTCGTCTACATC : 29421 195 : AlaTyrAspPheLeuTyrSerAlaCysGlyHisHisValCysSerMetPheLysIleAla : 214 :!!! !||| :!!|||! ! ! !! !!!.|||!.!|||.!!:!:!!.!!.:!!:!! SerCysAspThrIleTyrMetAsnValValGlnHisAlaCysGlyLeuLeuAsnValSer 29420 : TCCTGTGACACGATCTATATGAATGTCGTGCAACACGCGTGTGGATTATTGAACGTCTCT : 29361 215 : Gly : 215 ||| Gly 29360 : GGG : 29356 vulgar: gi|861722542|gb|AKO90014.1| 134 215 . KQ414772.1 29598 29355 - 139 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29356 29598 139 - . gene_id 1 ; sequence gi|861722542|gb|AKO90014.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29356 29598 . - . KQ414772.1 exonerate:protein2genome:local exon 29356 29598 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 29356 29598 139 - . alignment_id 1 ; Query gi|861722542|gb|AKO90014.1| ; Align 29599 135 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722542|gb|AKO90014.1| odorant receptor 50 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 138 Query range: 134 -> 215 Target range: 24419 -> 24176 135 : ValValPheAlaSerIleProValLeuSerLysValLeuAspLeuIleAlaProLeuAsn : 154 |||:!!|||.!!:!!:!: !!:!! ! !!:::|||||||||||||||:!!||| !||| ValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 24419 : GTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAAC : 24362 155 : GluSerArgProLysValTyrLeuTyrProAlaGluTyrPheValAspGlnAspLysTyr : 174 ||||||||| ! !! !!:!:!!|||||||||.!.||| !||||||:!!!!::!!:!! GluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHis 24361 : GAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCAT : 24302 175 : SerThrTyrIleTyrIleHisGlyTyrMetAlaLeuProIleThrMetThrLeuCysThr : 194 ! ! !|||:!: !||| ! ! !.!:!! !!:!!..!.!. !:!!! !! ! TyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIle 24301 : TACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATC : 24242 195 : AlaTyrAspPheLeuTyrSerAlaCysGlyHisHisValCysSerMetPheLysIleAla : 214 :!!! !||| :!!|||! ! ! !! !!!.|||!.!|||.!!:!:!!.!!.:!!:!! SerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSer 24241 : TCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCT : 24182 215 : Gly : 215 ||| Gly 24181 : GGG : 24177 vulgar: gi|861722542|gb|AKO90014.1| 134 215 . KQ414772.1 24419 24176 - 138 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24177 24419 138 - . gene_id 2 ; sequence gi|861722542|gb|AKO90014.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24177 24419 . - . KQ414772.1 exonerate:protein2genome:local exon 24177 24419 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 24177 24419 138 - . alignment_id 2 ; Query gi|861722542|gb|AKO90014.1| ; Align 24420 135 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722542|gb|AKO90014.1| odorant receptor 50 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 134 Query range: 134 -> 215 Target range: 38012 -> 37769 135 : ValValPheAlaSerIleProValLeuSerLysValLeuAspLeuIleAlaProLeuAsn : 154 |||:!!|||.!!|||:!: !!:!! ! !!:::|||||||||||||||:!!||| !||| ValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 38012 : GTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAAC : 37955 155 : GluSerArgProLysValTyrLeuTyrProAlaGluTyrPheValAspGlnAspLysTyr : 174 ||||||||| ! ! !!:!:!!||||||||| ! ||| !:!!|||:!!!!::!!:!! GluSerArgGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHis 37954 : GAATCGCGTGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAGGAACAT : 37895 175 : SerThrTyrIleTyrIleHisGlyTyrMetAlaLeuProIleThrMetThrLeuCysThr : 194 ! ! ! !:!: !||| ! ! !.!:!! !!:!!..!.!. !:!!! !! ! TyrTyrIleLeuMetGlyHisMetLeuCysValIleThrValValPhePheValTyrIle 37894 : TATTACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTGTACATC : 37835 195 : AlaTyrAspPheLeuTyrSerAlaCysGlyHisHisValCysSerMetPheLysIleAla : 214 :!!! !||| :!!|||! !::! !! !!!.|||!.!|||.!!:!:.!.!!.:!!:!! SerCysAspThrIleTyrMetSerIleValGlnHisAlaCysGlyLeuLeuAsnValSer 37834 : TCCTGTGACACGATCTACATGAGCATCGTTCAACACGCGTGCGGATTACTGAACGTCTCT : 37775 215 : Gly : 215 ||| Gly 37774 : GGG : 37770 vulgar: gi|861722542|gb|AKO90014.1| 134 215 . KQ414772.1 38012 37769 - 134 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37770 38012 134 - . gene_id 3 ; sequence gi|861722542|gb|AKO90014.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37770 38012 . - . KQ414772.1 exonerate:protein2genome:local exon 37770 38012 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 37770 38012 134 - . alignment_id 3 ; Query gi|861722542|gb|AKO90014.1| ; Align 38013 135 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722542|gb|AKO90014.1| odorant receptor 50 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 134 -> 215 Target range: 42715 -> 42472 135 : ValValPheAlaSerIleProValLeuSerLysValLeuAspLeuIleAlaProLeuAsn : 154 ..!:!!||| !||| ||| !:!! !! ! |||! !|||:!!!!: ! !! !||| ThrMetPheIleSerAlaProTyrIleProHisValTyrAspValMetLeuSerLysAsn 42715 : ACAATGTTTATCTCTGCGCCTTATATACCGCATGTATATGATGTTATGTTATCGAAAAAC : 42658 155 : GluSerArgProLysValTyrLeuTyrProAlaGluTyrPheValAspGlnAspLysTyr : 174 ||||||||| ! !! !!:!:!!||||||||| ! ||| !|||||||||||||||||| GluSerArgLysLeuGlyPheIleTyrProAlaTyrTyrGlyValAspGlnAspLysTyr 42657 : GAGTCACGAAAGTTGGGTTTCATTTACCCTGCCTATTATGGCGTTGATCAAGACAAGTAT : 42598 175 : SerThrTyrIleTyrIleHisGlyTyrMetAlaLeuProIleThrMetThrLeuCysThr : 194 ! ! !|||||| !||| ! !.! ! !:!:..!.!. ! !! !! ! TyrTyrTyrIleIleAlaHisMetThrSerGlyGlyLeuValValPhePheThrPheIle 42597 : TATTACTATATAATAGCTCACATGACATCTGGGGGCTTAGTGGTGTTTTTCACCTTTATC : 42538 195 : AlaTyrAspPheLeuTyrSerAlaCysGlyHisHisValCysSerMetPheLysIleAla : 214 :!!! !||| :!!|||! ! ! !! !!!.|||!.!|||.!!:!!!!. !|||:!! SerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuLeuIleSer 42537 : TCCTGCGACACGATTTACATGAATATCGTGCAACACGCGTGCGGATTGTTGTTGATTTCT : 42478 215 : Gly : 215 ||| Gly 42477 : GGG : 42473 vulgar: gi|861722542|gb|AKO90014.1| 134 215 . KQ414772.1 42715 42472 - 124 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42473 42715 124 - . gene_id 4 ; sequence gi|861722542|gb|AKO90014.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42473 42715 . - . KQ414772.1 exonerate:protein2genome:local exon 42473 42715 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42473 42715 124 - . alignment_id 4 ; Query gi|861722542|gb|AKO90014.1| ; Align 42716 135 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722542|gb|AKO90014.1| odorant receptor 50 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 134 -> 215 Target range: 33655 -> 33412 135 : ValValPheAlaSerIleProValLeuSerLysValLeuAspLeuIleAlaProLeuAsn : 154 :!!:!!|||::!||| ||| !!:!! !! ! !!:!!|||:!! ! !! !||| IleMetPheSerSerAlaProPheIleProHisPheIleAspValAlaLeuSerLysAsn 33655 : ATCATGTTCAGCTCGGCGCCTTTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAAC : 33598 155 : GluSerArgProLysValTyrLeuTyrProAlaGluTyrPheValAspGlnAspLysTyr : 174 ||||||||| ! ! !! :!!||||||||| ! ||| !:!!||||||||||||||| GluSerArgLysLeuSerLeuMetTyrProAlaTyrTyrGlyIleAspGlnAspLysTyr 33597 : GAGTCACGAAAATTAAGTTTGATGTACCCTGCCTATTACGGCATTGACCAGGacaagtat : 33538 175 : SerThrTyrIleTyrIleHisGlyTyrMetAlaLeuProIleThrMetThrLeuCysThr : 194 |||::: !||| ! ! ||| ! !! ..!.!. !:!!! !! ! TyrTyrTyrLeuMetAlaHisMetMetSerAlaGlyAlaAlaValPhePheValPheMet 33537 : tattattatctaatgGCTCACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATG : 33478 195 : AlaTyrAspPheLeuTyrSerAlaCysGlyHisHisValCysSerMetPheLysIleAla : 214 :!!! !||| :!!|||! ! ! !! !!!.|||!.!|||.!!:!!!!. |||:!! SerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuPheIleSer 33477 : TCCTGCGACACGATTTATATGAATATCGTTCAACACGCGTGCGGATTGTTGTTCATTTCC : 33418 215 : Gly : 215 ||| Gly 33417 : GGG : 33413 vulgar: gi|861722542|gb|AKO90014.1| 134 215 . KQ414772.1 33655 33412 - 123 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33413 33655 123 - . gene_id 5 ; sequence gi|861722542|gb|AKO90014.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33413 33655 . - . KQ414772.1 exonerate:protein2genome:local exon 33413 33655 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 33413 33655 123 - . alignment_id 5 ; Query gi|861722542|gb|AKO90014.1| ; Align 33656 135 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722542|gb|AKO90014.1| odorant receptor 50 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 129 -> 178 Target range: 45961 -> 45814 130 : IleTyrSerIleAlaValValPheAlaSerIleProValLeuSerLysValLeuAspLeu : 149 ||||||! ! !!.! !||||||:!!!!! |||:!!:!! !! :!!||||||||| IleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeuAspLeu 45961 : ATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTGGACCTA : 45904 150 : IleAlaProLeuAsnGluSerArgProLysValTyrLeuTyrProAlaGluTyrPheVal : 169 |||:!!|||||||||||||||||||||::::!!||| !||| !||| ! ! !!:! !! IleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyrCysTyrPhe 45903 : ATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTACTGTTACTTC : 45844 170 : AspGlnAspLysTyrSerThrTyrIle : 178 :!!! !||| ! |||! ! !|||:!! AsnProAspAspTyrTyrTyrTyrVal 45843 : AATCCGGACGACTACTATTATTACGTC : 45815 vulgar: gi|861722542|gb|AKO90014.1| 129 178 . KQ414772.1 45961 45814 - 115 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 45815 45961 115 - . gene_id 6 ; sequence gi|861722542|gb|AKO90014.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 45815 45961 . - . KQ414772.1 exonerate:protein2genome:local exon 45815 45961 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 45815 45961 115 - . alignment_id 6 ; Query gi|861722542|gb|AKO90014.1| ; Align 45962 130 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722548|gb|AKO90016.1| odorant receptor 52 [Microplitis mediator] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 329 -> 381 Target range: 1345558 -> 1345714 330 : PheGluSerThrLeuIleGlyGlnSerTyrTyrLysSerLysTrpTyrGluLeuPr : 348 ||| !!|||:!! !!!: !|||:!!! !||| |||!!.||||||!!:||||| Phe***SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuPr 1345559 : TTCTAGAGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACC : 1345613 349 : oValIleLysSerArgSerLeuMetPheIleGlyHisArgAlaArgArgProLeuL : 367 |! !! ! ! !!!|||||||||!!:||| ! ! !|||:!!!:!!:!|||! !! oAspLysTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerT 1345614 : AGATAAATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGT : 1345670 368 : euLeuThrAlaGlyLysPheCysAlaPheSerArgAsnLeuPhe : 381 !||||||||||||||||||! !!.!|||||| !.!. !||| yrLeuThrAlaGlyLysPheTyrValPheSerLeuGluThrPhe 1345671 : ACCTAACAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTC : 1345714 vulgar: gi|861722548|gb|AKO90016.1| 329 381 . KQ414782.1 1345558 1345714 + 106 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345559 1345714 106 + . gene_id 1 ; sequence gi|861722548|gb|AKO90016.1| ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345559 1345714 . + . KQ414782.1 exonerate:protein2genome:local exon 1345559 1345714 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345559 1345714 106 + . alignment_id 1 ; Query gi|861722548|gb|AKO90016.1| ; Align 1345559 330 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887639|gb|AGG17936.1| olfactory receptor 3 [Microplitis mediator] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 129 -> 216 Target range: 26246 -> 25988 130 : ValAsnMetGlyValIleIleTyrIleMetAspProValLeuSerAlaIleValAsnIle : 149 :!!::::!: !!!.! !:!!!:!!!: ||| !!:!!||| !!|||:!!:!!||| IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIle 26246 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATC : 26189 150 : IleSerLysSerAsnAspSerMetProLeuLysPheSerValProMetArgPheIleMet : 169 :!!! ! !! !|||!!:!!! !!! ! !||| ! !||| !!:!.!!:!: LeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal 26188 : CTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC : 26129 170 : PheAspGluGluLysTyrTyrTrpLeuLeuLeuIleLeuSerAsnThrCysValIlePhe : 189 ||||||!!:||||||:!!!::|||:!!:!! ! !! ! !! ! |||:!!.!. ---AspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMet 26128 : ---GACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATG : 26072 190 : IleIleAsnValIleIleCysCysAspValIlePheIleThrValValGlnHisValCys : 209 :!!|||::!|||.!! !..!||||||!.!! !!:!:!: !!.!|||||||||!.!||| LeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCys 26071 : CTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGC : 26012 210 : GlyIlePheAlaValValGly : 216 |||:!:!!.|||:!!!.!||| GlyLeuLeuAlaIleAlaGly 26011 : GGATTGTTGGCCATTGCAGGG : 25989 vulgar: gi|452887639|gb|AGG17936.1| 129 216 . LHQN01017803.1 26246 25988 - 121 M 40 120 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26246 121 - . gene_id 1 ; sequence gi|452887639|gb|AGG17936.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26246 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26246 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26246 121 - . alignment_id 1 ; Query gi|452887639|gb|AGG17936.1| ; Align 26247 130 120 ; Align 26127 171 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887639|gb|AGG17936.1| olfactory receptor 3 [Microplitis mediator] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 89 -> 216 Target range: 29748 -> 29370 90 : ArgArgLeuPheGluLysValArgGluAspTrpLysValProLysAsnAsnAspGluLys : 109 :::::::::|||::: !|||.!. !!::! ! ! !...::! :!! ! ! GlnLysIlePheGlnLeuGlnArgAsnArgPheIleAsnAspSerSerAlaAsnTyrPro 29748 : caaaaaatatttcaattgcaGCGTAATCGCTTCATAAACGATTCTTCTGCAAACTATCCA : 29691 110 : LeuValLeuGluSerTyrLeuLysMetGlyArgPheLeuSerIleGlyTyrAlaAlaPhe : 129 :!!:!! !..!||| !||| ::: ||| |||::: ! !|||||| ! IleIleThrSerSerIleLeuIleIleIleThrPheSerSerLeuTyrValAlaAlaAsn 29690 : ATTATTACTTCGTCTATTCttattataattacattttcttctctataTGTCGCAGCAAAT : 29631 130 : ValAsnMetGlyValIleIleTyrIleMetAspProValLeuSerAlaIleValAsnIle : 149 ! !! !.!. !! !:!!:!!!:!! ! ! !!:!! ! !! !:!!:!!:!!:!! GlyIlePheCysTyrValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeu 29630 : GGAATCTTCTGCTACGTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTT : 29571 150 : IleSerLysSerAsnAspSerMetProLeuLysPheSerValProMetArgPheIleMet : 169 |||||| !!.!|||!!:||| !:!! |||! ! !||| !.!!:! !:!: IleSerProLysAsnGluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyVal 29570 : ATTTCGCCGAAAAACGAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTC : 29511 170 : PheAspGluGluLysTyrTyrTrpLeuLeuLeuIleLeuSerAsnThrCysValIlePhe : 189 !!!:|||||| ! ||||||!::|||:!! ! !:!! !::!..! ..!:!! AspGluGluGluHisTyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrVal--- 29510 : GACGAAGAGGAGCATTACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTC--- : 29451 190 : IleIleAsnValIleIleCysCysAspValIlePheIleThrValValGlnHisValCys : 209 :!:.!! !||| !|||! !||||||..!|||!:!!!:!.!:!!|||||||||!.!||| ValPhePheValTyrIleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCys 29450 : GTGTTTTTCGTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGT : 29394 210 : GlyIlePheAlaValValGly : 216 |||:!!!!. !:!! !||| GlyLeuLeuAsnLeuSerGly 29393 : GGATTATTGAACCTCTCTGGG : 29371 vulgar: gi|452887639|gb|AGG17936.1| 89 216 . LHQN01017803.1 29748 29370 - 118 M 99 297 G 1 0 M 27 81 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29371 29748 118 - . gene_id 2 ; sequence gi|452887639|gb|AGG17936.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29371 29748 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29371 29748 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 29371 29748 118 - . alignment_id 2 ; Query gi|452887639|gb|AGG17936.1| ; Align 29749 90 297 ; Align 29452 190 81 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887639|gb|AGG17936.1| olfactory receptor 3 [Microplitis mediator] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 134 -> 216 Target range: 18429 -> 18186 135 : IleIleTyrIleMetAspProValLeuSerAlaIleValAsnIleIleSerLysSerAsn : 154 .!!:!:!:!|||...! ||| !! !!!! !:!:|||||| !!.!! !..!||| PheLeuPheIleGlnValProTrpSerThrArgLeuValAsnSerTyrLysThrGlnAsn 18429 : TTCTTGTTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCGTACAAGACACAGAAT : 18372 155 : AspSerMetProLeuLysPheSerValProMetArgPheIleMetPheAspGluGluLys : 174 !!! !||| ! !! !|||||| !!!:! !.!. !!||||||! !:!! IleThrProSerLeuProValValValPro---GlyTyrTyrPheValAspGluValGlu 18371 : ATAACGCCAAGTTTGCCAGTCGTCGTACCC---GGATATTACTTCGTCGACGAAGTAGAA : 18315 175 : TyrTyrTrpLeuLeuLeuIleLeuSerAsnThrCysValIlePheIleIleAsnValIle : 194 ||||||!::! !:!!:!!:!!! !.!!!.. ! :!!:!:.!!:!!:!: ||| ! TyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIleLeuIleValValValValTyr 18314 : TACTATTATTACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTGGTGTAC : 18255 195 : IleCysCysAspValIlePheIleThrValValGlnHisValCysGlyIlePheAlaVal : 214 !..!||||||..!! !!:!!!:..!:!!|||||||||..!||||||:!:||||||||| CysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaVal 18254 : TGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTG : 18195 215 : ValGly : 216 !.!||| AlaGly 18194 : GCCGGG : 18187 vulgar: gi|452887639|gb|AGG17936.1| 134 216 . LHQN01017803.1 18429 18186 - 117 M 30 90 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18187 18429 117 - . gene_id 3 ; sequence gi|452887639|gb|AGG17936.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18187 18429 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18187 18429 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 18187 18429 117 - . alignment_id 3 ; Query gi|452887639|gb|AGG17936.1| ; Align 18430 135 90 ; Align 18340 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887641|gb|AGG17937.1| olfactory receptor 4 [Microplitis mediator] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 101 Query range: 154 -> 218 Target range: 18375 -> 18186 155 : GlnAsnGluThrIleProLysArgPheSerIleProIleTyrTrpLysThrProAspIle : 174 |||||| !||| ! ! !! ! !! !:!!||| !|||!:: ..! !!!::!! GlnAsnIleThrProSerLeuProValValValProGlyTyrTyrPheValAspGluVal 18375 : CAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTA : 18318 175 : GluLysTyrTyrTyrTyrLeuIleSerPheGlnThrLeuAsnThrAsnPheIleIleSer : 194 ||| ||||||||||||:!!||| ! ! !|||! !!..! ! .!!:!!:!: ! Glu---TyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIleLeuIleValValVal 18317 : GAA---TACTATTATTACATCATACTTCACGGAACGTGCACAATTTTGATTGTAGTGGTG : 18261 195 : IleThrCysAlaSerAspAlaMetPheIleAsnLeuLeuGlnHisValThrGlyLeuPhe : 214 :!: !||||||!!!|||.!!! !:!!!: |||:!!||||||..! !||||||||| ValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPhe 18260 : GTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTC : 18201 215 : SerValThrGly : 218 :!!|||.!!||| AlaValAlaGly 18200 : GCCGTGGCCGGG : 18187 vulgar: gi|452887641|gb|AGG17937.1| 154 218 . LHQN01017803.1 18375 18186 - 101 M 21 63 G 1 0 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18187 18375 101 - . gene_id 1 ; sequence gi|452887641|gb|AGG17937.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18187 18375 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18187 18375 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 18187 18375 101 - . alignment_id 1 ; Query gi|452887641|gb|AGG17937.1| ; Align 18376 155 63 ; Align 18313 177 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887643|gb|AGG17938.1| olfactory receptor 5 [Microplitis mediator] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 135 Query range: 122 -> 224 Target range: 14215 -> 13909 123 : PheValLeuValTyrSerIleTrpIleTyrValIleAlaIleLeuPheLeuValPheLeu : 142 !:!:!!:!! !||||||||| !! ! :!!:!!..!:!!:!!.!.!!!|||! ! TyrIleValLysTyrSerIleAlaAsnAlaIleValCysValIleLeuPheValSerThr 14215 : TACATTGTCAAATATTCGATAGCGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACG : 14158 143 : ProLeuIleProValThrLeuAspIleIleLeuProLeuAsnGluSerArgProLysIle : 162 |||:!!! !||| !! !|||||||||:!!|||||| !|||||||||||| ! ! ProValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAla 14157 : CCGGTGACACCGCATATTTTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCG : 14098 163 : GluLeuTyrHisThrAspTyrLeuPheGlyProValLysTyrSerTrpValIleSerLeu : 182 ! :!!|||! .!! !!|||!!! !! ! ! !||||||..! ! !|||! ! ! TyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThr 14097 : TACATTTATCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACG : 14038 183 : HisGlnCysIleIleSerProPheProThrIleIleIleIleAlaThrGlySerLeuTyr : 202 |||..!... !:!:! !! ! ! ! ! !:!: !:!!||| !! !!!! !||| HisMetAlaSerValIleLeuValValPheTyrValTyrValAlaCysAspThrSerTyr 14037 : CACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTAC : 13978 203 : CysAsnCysCysGlnHisAlaCysGlyMetPheGluValIleGlyTyrArgLeuLysAsn : 222 !! ! ||||||!.!||||||:!!!!.! ||| !||| :::::::::::: IleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly***LysIleArgSer 13977 : ATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaattcgatcg : 13918 223 : LeuAsp : 224 ||| AsnAsp 13917 : aacgat : 13910 vulgar: gi|452887643|gb|AGG17938.1| 122 224 . LHQN01017803.1 14215 13909 - 135 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13910 14215 135 - . gene_id 1 ; sequence gi|452887643|gb|AGG17938.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13910 14215 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13910 14215 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13910 14215 135 - . alignment_id 1 ; Query gi|452887643|gb|AGG17938.1| ; Align 14216 123 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887643|gb|AGG17938.1| olfactory receptor 5 [Microplitis mediator] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 127 -> 217 Target range: 26255 -> 25988 128 : SerIleTrpIleTyrValIleAlaIleLeuPheLeuValPheLeuProLeuIleProVal : 147 !!!:!: |||! :!! !||| !||||||:!! ! ||||||!!!:!: !! ! ThrValHisIleSerLeuCysAlaAlaLeuPheMetCys---LeuProPheValSerPro 26255 : ACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGC---TTGCCGTTCGTGTCGCCG : 26201 148 : ThrLeuAspIleIleLeuProLeuAsnGluSerArgProLysIleGluLeuTyrHisThr : 167 ! !|||||||||:!!:!!||||||||||||!!!||| !!::!:!: :!!|||! .!! IleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAla 26200 : ATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCT : 26141 168 : AspTyrLeuPheGlyProValLysTyrSerTrpValIleSerLeuHisGlnCysIleIle : 187 !!|||!!! !!! ! !! !|||||| !!:::!!||| ! !|||..!! !:!!:!! TyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuVal 26140 : TACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTA : 26081 188 : SerProPheProThrIleIleIleIleAlaThrGlySerLeuTyrCysAsnCysCysGln : 207 ! !.!.! !! ! !:!!.!! !||| !! !:!! !||| !!..! ||| ValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGln 26080 : GTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAA : 26021 208 : HisAlaCysGlyMetPheGluValIleGly : 217 ||||||||||||:!!!!.! :!! !||| HisAlaCysGlyLeuLeuAlaIleAlaGly 26020 : CACGCTTGCGGATTGTTGGCCATTGCAGGG : 25989 vulgar: gi|452887643|gb|AGG17938.1| 127 217 . LHQN01017803.1 26255 25988 - 119 M 13 39 G 1 0 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26255 119 - . gene_id 2 ; sequence gi|452887643|gb|AGG17938.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26255 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26255 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26255 119 - . alignment_id 2 ; Query gi|452887643|gb|AGG17938.1| ; Align 26256 128 39 ; Align 26217 142 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722542|gb|AKO90014.1| odorant receptor 50 [Microplitis mediator] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 174 Query range: 128 -> 215 Target range: 26249 -> 25988 129 : TyrIleTyrSerIleAlaValValPheAlaSerIleProValLeuSerLysValLeuAsp : 148 :!!|||! ! ! !|||!.!:!!||| !!!!:!:||| !!:!!||| !:!!|||||| HisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAsp 26249 : CATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGAC : 26192 149 : LeuIleAlaProLeuAsnGluSerArgProLysValTyrLeuTyrProAlaGluTyrPhe : 168 :!!:!! !||||||||||||!!!||| !!::!:!!!:!:!!||||||||| ! |||||| IleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPhe 26191 : ATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTC : 26132 169 : ValAspGlnAspLysTyrSerThrTyrIleTyrIleHisGlyTyrMetAlaLeuProIle : 188 ||||||:!!||||||||| ! !! ||| ||| !|||:!:!.!:!! !!!: ValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMet 26131 : GTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATG : 26072 189 : ThrMetThrLeuCysThrAlaTyrAspPheLeuTyrSerAlaCysGlyHisHisValCys : 208 !!!::!!:!!! ! !|||! !||| ! !||| ! !..!! !!!.|||!.!||| LeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCys 26071 : CTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGC : 26012 209 : SerMetPheLysIleAlaGly : 215 .!!:!!!!. ||||||||| GlyLeuLeuAlaIleAlaGly 26011 : GGATTGTTGGCCATTGCAGGG : 25989 vulgar: gi|861722542|gb|AKO90014.1| 128 215 . LHQN01017803.1 26249 25988 - 174 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26249 174 - . gene_id 1 ; sequence gi|861722542|gb|AKO90014.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26249 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26249 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26249 174 - . alignment_id 1 ; Query gi|861722542|gb|AKO90014.1| ; Align 26250 129 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722542|gb|AKO90014.1| odorant receptor 50 [Microplitis mediator] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 138 Query range: 134 -> 215 Target range: 29613 -> 29370 135 : ValValPheAlaSerIleProValLeuSerLysValLeuAspLeuIleAlaProLeuAsn : 154 |||:!!|||.!!:!!:!: !!:!! ! !!:::|||||||||||||||:!!||| !||| ValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 29613 : GTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAAC : 29556 155 : GluSerArgProLysValTyrLeuTyrProAlaGluTyrPheValAspGlnAspLysTyr : 174 ||||||||| ! !! !!:!:!!|||||||||.!.||| !||||||:!!!!::!!:!! GluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHis 29555 : GAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCAT : 29496 175 : SerThrTyrIleTyrIleHisGlyTyrMetAlaLeuProIleThrMetThrLeuCysThr : 194 ! ! !|||:!: !||| ! ! !.!:!! !!:!!..!.!. !:!!! !! ! TyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIle 29495 : TACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATC : 29436 195 : AlaTyrAspPheLeuTyrSerAlaCysGlyHisHisValCysSerMetPheLysIleAla : 214 :!!! !||| :!!|||! ! ! !! !!!.|||!.!|||.!!:!:!!.!!.:!!:!! SerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSer 29435 : TCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCT : 29376 215 : Gly : 215 ||| Gly 29375 : GGG : 29371 vulgar: gi|861722542|gb|AKO90014.1| 134 215 . LHQN01017803.1 29613 29370 - 138 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29371 29613 138 - . gene_id 2 ; sequence gi|861722542|gb|AKO90014.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29371 29613 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29371 29613 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 29371 29613 138 - . alignment_id 2 ; Query gi|861722542|gb|AKO90014.1| ; Align 29614 135 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722542|gb|AKO90014.1| odorant receptor 50 [Microplitis mediator] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 129 -> 178 Target range: 33708 -> 33561 130 : IleTyrSerIleAlaValValPheAlaSerIleProValLeuSerLysValLeuAspLeu : 149 ||||||! ! !!.! !||||||:!!!!! |||:!!:!! !! :!!||||||||| IleTyrIleGlyValSerValPheSerThrAlaProLeuIleProPheIleLeuAspLeu 33708 : ATATACATTGGAGTGTCCGTGTTTTCTACCGCGCCCCTCATACCGTTCATCCTGGACCTA : 33651 150 : IleAlaProLeuAsnGluSerArgProLysValTyrLeuTyrProAlaGluTyrPheVal : 169 |||:!!|||||||||||||||||||||::::!!||| !||| !||| ! ! !!:! !! IleSerProLeuAsnGluSerArgProArgLeuTyrAlaTyrLysAlaTyrCysTyrPhe 33650 : ATTTCACCTTTGAACGAGTCTCGTCCACGTTTGTACGCCTATAAAGCCTACTGTTACTTC : 33591 170 : AspGlnAspLysTyrSerThrTyrIle : 178 :!!! !||| ! |||! ! !|||:!! AsnProAspAspTyrTyrTyrTyrVal 33590 : AATCCGGACGACTACTATTATTACGTC : 33562 vulgar: gi|861722542|gb|AKO90014.1| 129 178 . LHQN01017803.1 33708 33561 - 115 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 33562 33708 115 - . gene_id 3 ; sequence gi|861722542|gb|AKO90014.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 33562 33708 . - . LHQN01017803.1 exonerate:protein2genome:local exon 33562 33708 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 33562 33708 115 - . alignment_id 3 ; Query gi|861722542|gb|AKO90014.1| ; Align 33709 130 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722548|gb|AKO90016.1| odorant receptor 52 [Microplitis mediator] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 315 Query range: 6 -> 237 Target range: 30788 -> 31548 7 : PheLysTyrAlaValAlaTrpAsnArgThrSerLeuArgPheValGlyLeuTrpProGlu : 26 !!.||| |||:!!!.!||||||||| !!:!:!!..!.!.||||||:!!||||||||| LeuLysValAlaLeuGlyTrpAsnArgTrpAsnMetGluLeuValGlyIleTrpProGlu 30789 : TTGAAGGTAGCACTTGGATGGAACCGTTGGAACATGGAACTGGTTGGAATTTGGCCAGAA : 30846 27 : Pro<-><->AsnAspGlyPhePheThrLysLeuLysGlyTrpLeuGlyAlaTrpSerIle : 44 ||| ::!||| ! !:: !!!!.!!!|||!.!! !||| ! !!:: ||| ProSerArgSerAspGlnArgTrpProAsnPheLysAlaLeuLeuPheIlePheValIle 30847 : CCGAGCAGATCTGATCAACGATGGCCGAATTTCAAGGCTTTGCTGTTCATTTTTGtgata : 30906 45 : PheMetThrIleTyrLeuProGlnSerThrLeuAlaTyrValAsnTrpGlyAspMetAsn : 64 ...... ! !|||||||||..! ! ! ! !!! |||||||||:!:... IlePhePheGlyThrGlyProGlnSerValAsnLeuLeuPheIleTrpGlyAspLeuGly 30907 : atattttttggaaCCGGACCTCAGAGCGTGAATCTACTTTTCATATGGGGAGACCTTGGA : 30966 65 : AlaValIleGluSerLeuSer<->IleAsnGlyProIleLeuIleAlaIleIleLysIle : 83 !|||! |||!:!|||||| !||| !||| !:!!! !|||!!:!!:|||:!: LeuValThrGluAsnLeuSerThrAlaAsnIleProGlyIleAsnAlaMetMetLysLeu 30967 : TTGGTCACGGAAAATCTGTCCACGGCTAATATTCCCGGCATAAACGCCATGATGAAACTG : 31026 84 : IleIlePheArgHisTyrArgAsp{V} >>>> Target Intron 1 >>>> {al} : 92 |||||| ! !!|||:!!||||||{!} 67 bp {.!} IleIleAlaTrpHisHisArgAsp{A}++ ++{la} 31027 : ATTATCGCCTGGCATCACAGAGAT{G}gt.........................ag{ct} : 31121 93 : LeuLysLeuAlaIleValThrMetThrLysAspTrpAsnGluLeuArgSerLysGluGlu : 112 .!!|||! !!.!||| !:!!.!. ! ! ||||||!!. ! !|||!!:||||||||| PheLysProValIleLysSerPheTyrAspAspTrpLysThrSerArgThrLysGluGlu 31122 : tTCAAGCCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACcaaggaggag : 31180 113 : TyrLysValMetLeuLysThrAlaLysIleSerArgIleIleSerValThrSerThrIle : 132 :::..!|||||||||! !||||||.!!:!!!:! !||||||:!! !!!!:!!:!! LysGluThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIleTrpCysSerVal 31181 : aaggagacCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGGTGCTCAGTA : 31240 133 : IleThrAsnThrLeuPheIleAlaPheValPhePheLysIleTrpIleGlyMetGlnLeu : 152 :!!||| |||:!! !!! !!.!!:!:!! !.!!::! |||||| ! |||||| LeuThrLeuThrMetValThrValTyrLeuSerLeuArgAlaTrpIleIleTyrGlnLeu 31241 : TTAACCTTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATCTACCAGCTT : 31300 153 : MetLysArgThrAspLeuAspProArgLeuSerValGlyLeuLeuTyrProGlyTyrLeu : 172 !:! !!.!.!. !.!. !|||||| ||||||||||||||||||!!! AspArgAlaAsnGlnLysGlnAspArgLeu---------LeuLeuTyrProGlyTyrPhe 31301 : GATAGGGCAAACCAGAAACAGGATCGTCTG---------CTCCTGTACCCTGGCTATTTT : 31351 173 : ProPheAspSerArgIleMetThrTyrPheIleProThrTrpIleAlaGlnCysPheAla : 192 |||||||||! !||| !!!: ! .!.:!: !!||| .!!!.!||| .!!||| ProPheAspIleArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnValLeuAla 31352 : CCCTTCGATATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTGCTCGCA : 31411 193 : ThrCysPheSerMetThrAlaTyrAlaAlaPheAspThrPheValSerCysMetValLeu : 212 .!!! !! !:!!:!:! !::!|||.!!.!! ! |||||||||:!!:!! :!!:!!:!! AlaTyrSerAlaValIleSerTyrThrThrValAspThrPheIleAlaMetLeuIleMet 31412 : GCGTATTCCGCTGTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTGATAATG : 31471 213 : HisIleCysGlyGlnLeuAlaValIleGlyValSerLeuLysAsnLeuIleAsnAspAsp : 232 |||||||||||||||!!!! !:!!:!: !! !!.!|||::!!..|||!!::!!|||!!: HisIleCysGlyGlnPheGluIleLeuArgGlnLysLeuArgArgLeuMetAspAspGlu 31472 : CACATATGCGGACAATTTGAGATACTGAGACAGAAATTACGAAGGCTGATGGATGACGAG : 31531 233 : ValLysValAspSer : 237 !|||..! ||| LysLysThrArgSer 31532 : AAGAAGACCAGAAGC : 31548 vulgar: gi|861722548|gb|AKO90016.1| 6 237 . KQ414804.1 30788 31548 + 315 M 21 63 G 0 6 M 44 132 G 0 3 M 20 60 S 0 1 5 0 2 I 0 63 3 0 2 S 1 2 M 70 210 G 3 0 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 30789 31548 315 + . gene_id 1 ; sequence gi|861722548|gb|AKO90016.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 30789 31053 . + . KQ414804.1 exonerate:protein2genome:local exon 30789 31053 . + . insertions 9 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 31054 31055 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 31054 31120 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 31119 31120 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 31121 31548 . + . KQ414804.1 exonerate:protein2genome:local exon 31121 31548 . + . insertions 0 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 30789 31548 315 + . alignment_id 1 ; Query gi|861722548|gb|AKO90016.1| ; Align 30789 7 63 ; Align 30858 28 132 ; Align 30993 72 60 ; Align 31123 93 210 ; Align 31333 166 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722548|gb|AKO90016.1| odorant receptor 52 [Microplitis mediator] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 208 Query range: 284 -> 398 Target range: 33789 -> 34668 285 : PheAlaMetIleThrSerPheIleAspProSerAlaGlyGluIleSerIlePheGluMet : 304 .!.:!!:!:||||||..! ! ||| !!:!! ! !! !|||! !! ! ! :!!:!! MetSerLeuIleThrGlnValIleLeuGluAsnGluLysGlyIlePheAsnValGlnLeu 33790 : ATGTCGTTAATTACACAGGTGATACTAGAAAACGAGAAAGGAATATTCAACGTGCAATTG : 33847 305 : LeuPheSerIleValTyrValPheTyrThrValMetHisLeuPheValTyrCysTyrVal : 324 ||||||! !:!::!!!:!|||! !!:!! !:!!:!:|||:!!!:!:!!|||||||||:!! LeuPhePheValLeuPheValCysPheIleLeuValHisIleTyrIleTyrCysTyrIle 33848 : CTTTTCTTCGTGCTGTTCGTATGCTTCATCCTTGTACACATCTACATTTATTGTTACATA : 33907 325 : GlyAspTyrLeuSerPheGlu >>>> Target Intron 1 >>>> SerThrLeuI : 335 |||!!: ||| ! .!. 454 bp |||! ! !! GlyGluMetLeuLeuThrHis+- ++SerArgGluM 33908 : GGAGAGATGCTACTCACACATgc.........................agAGCAGAGAAA : 34394 336 : leGlyGlnSerTyrTyrLysSerLysTrpTyrGluLeuProValIleLysSerArgSerL : 355 !:.!!.!.||| !|||:!!|||!!.||||||.!.:!! !! ! !:!!:!!!:!!!!| etSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProProGluAlaLysCysL 34395 : TGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCAGAAGCCAAGTGCC : 34454 356 : euMetPheIleGlyHisArgAlaArgArgProLeuLeuLeuThrAlaGlyLysPheCysA : 375 ||:!:|||||| !||||||.!! !|||||||||! !|||||||||||||||||| !!. euLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAlaGlyLysPheSerT 34455 : TTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCAGGAAAATTCAGTA : 34514 376 : laPheSerArgAsnLeuPheLeuAla >>>> Target Intron 2 >>>> ValLe : 385 !!||||||! !.!.:!!||| !.!! 83 bp :::|| hrPheSerMetGluMetPheSerThr++ ++IleLe 34515 : CCTTCTCCATGGAAATGTTCAGTACTgt.........................agattcT : 34627 386 : uLysThrSerPheGlyTyrLeuSerMetLeuLeuAlaVal : 398 |||||||:!!.!.||||||||||||:!:||||||.!!||| uLysThrAlaMetGlyTyrLeuSerValLeuLeuThrVal 34628 : GAAAACAGCAATGGGATATCTTTCAGTTCTCCTCACAGTT : 34668 vulgar: gi|861722548|gb|AKO90016.1| 284 398 . KQ414804.1 33789 34668 + 208 M 47 141 5 0 2 I 0 450 3 0 2 M 52 156 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33790 34668 208 + . gene_id 2 ; sequence gi|861722548|gb|AKO90016.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33790 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33790 33930 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 1 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 2 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 1 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34668 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34668 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33790 34668 208 + . alignment_id 2 ; Query gi|861722548|gb|AKO90016.1| ; Align 33790 285 141 ; Align 34385 332 156 ; Align 34624 384 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722548|gb|AKO90016.1| odorant receptor 52 [Microplitis mediator] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 171 Query range: 164 -> 254 Target range: 36761 -> 37031 165 : GlyLeuLeuTyrProGlyTyrLeuProPheAspSerArgIleMetThrTyrPheIlePro : 184 ||||||||| !|||!.! !!!|||!:!|||!!!!.!! !! !! !!!:! ! ! GlyLeuLeuIleProAlaThrPheProTyrAspThrAsnLysSerProAsnTyrGluIle 36762 : GGACTACTTATCCCGGCCACATTTCCATACGACACGAATAAAAGTCCTAATTACGAAATT : 36819 185 : ThrTrpIleAlaGlnCysPheAlaThrCysPheSerMetThrAlaTyrAlaAlaPheAsp : 204 ||||||:!!!.!|||! ! ! !.!||| !!.||| !! !..!|||:!!..!|||||| ThrTrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSerCysPheAsp 36820 : ACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGAT : 36879 205 : ThrPheValSerCysMetValLeuHisIleCysGlyGlnLeuAlaValIleGlyValSer : 224 |||||||||:!! !:!:||||||||||||||||||||||||.!!|||:!! !!:!!:!! ThrPheValAlaValLeuValLeuHisIleCysGlyGlnLeuThrValLeuArgIleAla 36880 : ACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACTGTTCTCCGCATTGCC : 36939 225 : LeuLysAsnLeuIleAsnAspAspValLysValAspSerLysValPheTrpIleLysPhe : 244 |||:!!|||||| !||| :!!|||! !:!!! !!.. !||| !::!!!. LeuGluAsnLeuAlaAsnThrThrIleLysAspAsnTyrSerLysPheGlnGluArgLeu 36940 : CTCGAGAATCTTGCTAACACGACAATAAAAGACAACTACAGCAAGTTCCAAGAACGATTA : 36999 245 : SerGluIleIleLysHisHisGluGluIle : 254 .!! ! |||:!: ! ...!!..!.:!!:!: GlyTyrIleValHisArgGlnAsnGlnLeu 37000 : GGATACATTGTGCACAGGCAGAATCAATTG : 37031 vulgar: gi|861722548|gb|AKO90016.1| 164 254 . KQ414804.1 36761 37031 + 171 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36762 37031 171 + . gene_id 3 ; sequence gi|861722548|gb|AKO90016.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36762 37031 . + . KQ414804.1 exonerate:protein2genome:local exon 36762 37031 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36762 37031 171 + . alignment_id 3 ; Query gi|861722548|gb|AKO90016.1| ; Align 36762 165 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722548|gb|AKO90016.1| odorant receptor 52 [Microplitis mediator] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 37 -> 151 Target range: 36014 -> 36737 38 : TrpLeuGlyAlaTrpSerIlePheMetThrIleTyrLeuProGlnSerThrLeuAlaTyr : 57 |||!!! !.!!! !! !! !!:!: !|||! ! !||||||! !|||! ! ! TrpPheThrThrLeuIleThrValValPheIleCysAlaProGlnMetThrHisLeuVal 36015 : TGGTTCACGACTTTGATAACGGTTGTCTTCATATGCGCTCCCCAAATGACGCATTTGGTA : 36072 58 : ValAsnTrpGlyAspMetAsnAlaValIleGluSerLeuSerIleAsnGlyProIleLeu : 77 :::... :::::::!!! !|||||||||!:!||||||:!!||| !|||!!:||| LeuLysSerThrAsnLeuAspGluValIleGluAsnLeuSerValAsnIleProMetLeu 36073 : ttaaaatcgacgaatttgGACGAGGTGATAGAGAATCTGTCGGTCAACATACCGATGCTC : 36132 78 : IleAlaIle{I} >>>> Target Intron 1 >>>> {le}LysIleIleIlePhe : 86 .!!:!!:!:{ } 381 bp { !}|||:::|||... PheSerLeu{A}+- +-{sp}LysLeuIlePheThr 36133 : TTCTCATTG{G}gc.........................aa{AC}AAACtgattttcaca : 36540 87 : ArgHisTyrArgAspValLeuLysLeuAlaIleValThrMetThrLysAspTrpAsnGlu : 106 ||| ! !.!||| !!!! !!!: ! !!!: ! ! |||||| ||| IleHisThrSerLeuAlaLeuValPheLeuMetSerGlnIlePheAspAspTrpAlaGlu 36541 : attcacACGTCTCTAGCGCTAGTATTCTTAATGAGCCAAATATTCGACGACTGGGCGGAA : 36600 107 : LeuArgSerLysGluGluTyrLysValMetLeuLysThrAlaLysIleSerArgIleIle : 126 ! !! ! !!:!!! !!!: ! ! ..!|||||||||||||||||||||||||||!!:||| ProIleProGluValAspArgHisThrMetLeuLysThrAlaLysIleSerArgMetIle 36601 : CCAATCCCGGAGGTGGATCGCCACACGATGCTGAAGACCGCGAAAATTAGTCGAATGATA : 36660 127 : SerValThrSerThrIleIleThrAsnThrLeuPheIleAlaPheValPhePheLysIle : 146 |||:!!..!!!!:!!|||:!:||| !!..!:!! !!:!:||||||:!!! .!!:!!||| SerIleValCysSerIleLeuThrTyrValMetValLeuAlaPheLeuSerLeuGlnIle 36661 : TCCATAGTCTGTTCTATCCTGACGTATGTCATGGTTTTGGCCTTCTTGTCACTTCAAATT : 36720 147 : TrpIleGlyMetGln : 151 |||! !.!!|||||| TrpSerSerMetGln 36721 : TGGAGCAGCATGCAA : 36737 vulgar: gi|861722548|gb|AKO90016.1| 37 151 . KQ414804.1 36014 36737 + 133 M 43 129 S 0 1 5 0 2 I 0 377 3 0 2 S 1 2 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36015 36737 133 + . gene_id 4 ; sequence gi|861722548|gb|AKO90016.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 36015 36144 . + . KQ414804.1 exonerate:protein2genome:local exon 36015 36144 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 36145 36146 . + . intron_id 1 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 36145 36525 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 36524 36525 . + . intron_id 0 ; splice_site "AA" KQ414804.1 exonerate:protein2genome:local cds 36526 36737 . + . KQ414804.1 exonerate:protein2genome:local exon 36526 36737 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36015 36737 133 + . alignment_id 4 ; Query gi|861722548|gb|AKO90016.1| ; Align 36015 38 129 ; Align 36528 82 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722548|gb|AKO90016.1| odorant receptor 52 [Microplitis mediator] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 165 -> 219 Target range: 44874 -> 45036 166 : LeuLeuTyrProGlyTyrLeuProPheAspSerArgIleMetThrTyrPheIleProThr : 185 ||||||!:!! !!.!|||!!!|||!:!|||||| !:!!! !! !!!:! ! !||| LeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThr 44875 : CTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACA : 44932 186 : TrpIleAlaGlnCysPheAlaThrCysPheSerMetThrAlaTyrAlaAlaPheAspThr : 205 !||||||||| !.!.|||.!!! !!:!:!! |||.!!|||.!!||| !!|||||| ValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThr 44933 : GTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACT : 44992 206 : PheValSerCysMetValLeuHisIleCysGlyGlnLeuAla : 219 |||:!! ! :!::!!||||||:!!||||||||||||:!! PheIleValMetLeuIleLeuHisValCysGlyGlnLeuSer 44993 : TTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCG : 45036 vulgar: gi|861722548|gb|AKO90016.1| 165 219 . KQ414804.1 44874 45036 + 125 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44875 45036 125 + . gene_id 5 ; sequence gi|861722548|gb|AKO90016.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44875 45036 . + . KQ414804.1 exonerate:protein2genome:local exon 44875 45036 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44875 45036 125 + . alignment_id 5 ; Query gi|861722548|gb|AKO90016.1| ; Align 44875 166 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722548|gb|AKO90016.1| odorant receptor 52 [Microplitis mediator] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 116 Query range: 322 -> 405 Target range: 39938 -> 40265 323 : TyrValGlyAspTyrLeuSerPheGluSerThrLeuIleGlyGlnSerTyrTyrLysSer : 342 |||::: :::||| |||||| !|||||||||||| ||| ! !!! TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 343 : LysTrpTyrGluLeuProValIleLysSerArgSerLeuMetPheIleGlyHisArgAla : 362 !!.||||||!!:|||||| !! ! :!! !||||||:!:.!!:!: ! !|||||| AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 363 : ArgArgProLeuLeuLeuThrAlaGlyLysPheCysAlaPheSerArgAsnLeuPheLeu : 382 !:! ! !!!!!! !:!!||||||||||||||| !! !!||||||! !.!.|||||| ! GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPheAsn 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTTAAC : 40116 383 : AlaValLeu{L} >>>> Target Intron 1 >>>> {ys}ThrSerPheGlyTyr : 391 |||||| !{:} 78 bp {!!}|||||| !|||||| AlaValSer{G}+- +-{ln}ThrSerAlaGlyTyr 40117 : GCTGTGAGT{C}ga.........................aa{AA}ACGTCTGCTGGATAT : 40221 392 : LeuSerMetLeuLeuAlaValLysGlnGluLysIleSerAsp : 405 ||||||:!!|||||||||:!!|||.!...! !:!!..!!!: LeuSerValLeuLeuAlaMetLysAspArgLeuValGluGlu 40222 : CTTTCCGTGTTGCTAGCTATGAAAGACAGACTGGTCGAAGAG : 40265 vulgar: gi|861722548|gb|AKO90016.1| 322 405 . KQ414804.1 39938 40265 + 116 M 63 189 S 0 1 5 0 2 I 0 74 3 0 2 S 1 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40265 116 + . gene_id 6 ; sequence gi|861722548|gb|AKO90016.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39939 40128 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40128 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40129 40130 . + . intron_id 1 ; splice_site "GA" KQ414804.1 exonerate:protein2genome:local intron 40129 40206 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40205 40206 . + . intron_id 0 ; splice_site "AA" KQ414804.1 exonerate:protein2genome:local cds 40207 40265 . + . KQ414804.1 exonerate:protein2genome:local exon 40207 40265 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40265 116 + . alignment_id 6 ; Query gi|861722548|gb|AKO90016.1| ; Align 39939 323 189 ; Align 40209 387 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722548|gb|AKO90016.1| odorant receptor 52 [Microplitis mediator] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 5 -> 86 Target range: 44104 -> 44353 6 : AspPheLysTyrAlaValAlaTrpAsnArgThrSerLeuArgPheValGlyLeuTrpPro : 25 |||!!.||||||!.! !!.!||||||!.! !!!!:!!||||||:!!|||:!!|||||| AspLeuLysTyrValTyrGlyTrpAsnHisTyrThrMetArgPheMetGlyIleTrpPro 44105 : GATTTGAAGTATGTGTACGGTTGGAACCATTACACCATGAGGTTCATGGGAATCTGGCCa : 44162 26 : GluProAsnAsp<->GlyPhePheThrLysLeuLysGlyTrpLeuGlyAlaTrpSerIle : 44 ||| ... ..! :!!!..! ! !!.! :!! !!.! ! !!!: GluGluArgLysTrpAsnGlnProSerSerTyrLeuAlaLeuIleProValLeuMetMet 44163 : gaggaaagaaaatggaaCCAACCATCGAGTTACCTAGCTCTAATACCAGTTCTCATGATG : 44222 45 : PheMetThrIleTyrLeuProGlnSerThrLeuAlaTyrValAsnTrpGlyAspMetAsn : 64 |||:!: !:!!! !:!!||||||!!!! ! ! !! !!! !|||||||||.!.||| PheLeuPheValCysValProGlnThrIleAsnLeuSerPheIleTrpGlyAspPheAsn 44223 : TTTCTCTTCGTTTGTGTCCCACAAACGATCAATCTTTCATTCATCTGGGGTGATTTTAAT : 44282 65 : AlaValIleGluSerLeuSerIle<->AsnGlyProIleLeuIleAlaIleIleLysIle : 83 !|||:!!|||!:!||||||!!: ||| ! !!||| !|||:!!:!!:!:|||! ! LeuValValGluAsnLeuSerMetGlyAsnIleThrIleThrIleSerLeuLeuLysThr 44283 : TTAGTGGTAGAGAATCTATCCATGGGTAACATAACAATCACTATTTCCCTTCTGAAGACC : 44342 84 : IleIlePhe : 86 ||| !||| IleAlaPhe 44343 : ATCGCTTTT : 44353 vulgar: gi|861722548|gb|AKO90016.1| 5 86 . KQ414804.1 44104 44353 + 113 M 24 72 G 0 3 M 43 129 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44105 44353 113 + . gene_id 7 ; sequence gi|861722548|gb|AKO90016.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44105 44353 . + . KQ414804.1 exonerate:protein2genome:local exon 44105 44353 . + . insertions 6 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44105 44353 113 + . alignment_id 7 ; Query gi|861722548|gb|AKO90016.1| ; Align 44105 6 72 ; Align 44180 30 129 ; Align 44312 73 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722548|gb|AKO90016.1| odorant receptor 52 [Microplitis mediator] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 291 -> 331 Target range: 51711 -> 51831 292 : IleAspProSerAlaGlyGluIleSerIlePheGluMetLeuPheSerIleValTyrVal : 311 |||||| !..! !! !|||! !! ||||||::::::||||||! !:!: !!|||||| IleAspGluGluIleAspGluAsnMetIlePheGlnIleLeuPheLeuLeuPheTyrVal 51712 : ATTGACGAGGAAATAGATGAAAACAtgattttccaaattctctTTTTGCTGTTCTACGTG : 51769 312 : PheTyrThrValMetHisLeuPheValTyrCysTyrValGlyAspTyrLeuSerPheGlu : 331 !!|||..!:!!:!:!!.||||||:!!|||||||||||||||!!: |||||| !!||| ValTyrValMetLeuGlnLeuPheLeuTyrCysTyrValGlyGluArgLeuSerValGlu 51770 : GTTTACGTGATGCTACAATTATTCTTGTATTGTTACGTGGGTGAAAGGCTTTCCGTTGAG : 51829 vulgar: gi|861722548|gb|AKO90016.1| 291 331 . KQ414804.1 51711 51831 + 106 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51712 51831 106 + . gene_id 8 ; sequence gi|861722548|gb|AKO90016.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 51712 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51712 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51712 51831 106 + . alignment_id 8 ; Query gi|861722548|gb|AKO90016.1| ; Align 51712 292 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722542|gb|AKO90014.1| odorant receptor 50 [Microplitis mediator] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 153 Query range: 117 -> 213 Target range: 457123 -> 457411 118 : SerHisLysLysValIleSerValTyrValPheTyrIleTyrSerIleAlaValValP : 137 ::: |||||| |||:!! !..! !!! !! !|||!!! !|||:!!|||. AsnAspLysLysLysProSerMetIleThrValSerThrTyrCysGlyAlaLeuValI 457124 : aatgataaaaaaaaaccttcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTA : 457181 138 : heAlaSerIleProValLeuSerLysValLeuAspLeuIleAlaProLeuAsnGluSe : 156 !!.!!!!!:!:! !:!!!!! !!! !:!!||||||:!!:!:!.!|||||||||||||| leThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSe 457182 : TTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATC : 457238 157 : rArgProLysValTyrLeuTyrProAlaGluTyrPheValAspGlnAspLysTyrSer : 175 ||||||| ! !! ! ! ! !!||||||||||||||||||..! ! ||||||! ! rArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMet 457239 : ACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATG : 457295 176 : ThrTyrIleTyrIleHisGlyTyrMetAlaLeuProIleThrMetThrLeuCysThrA : 195 !|||||| ! ||| ! !! !..!|||! !|||.!! ||| !! |||| HisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrA 457296 : CATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAG : 457355 196 : laTyrAspPheLeuTyrSerAlaCysGlyHisHisValCysSerMetPheLysIle : 213 || !!!!:! !||| !! !.!! !! !! |||||||||.!!:!!||||||:!! laAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeu 457356 : CTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTT : 457411 vulgar: gi|861722542|gb|AKO90014.1| 117 213 . KQ414815.1 457123 457411 + 153 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457124 457411 153 + . gene_id 1 ; sequence gi|861722542|gb|AKO90014.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457124 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457124 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457124 457411 153 + . alignment_id 1 ; Query gi|861722542|gb|AKO90014.1| ; Align 457124 118 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722542|gb|AKO90014.1| odorant receptor 50 [Microplitis mediator] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 129 -> 213 Target range: 481983 -> 482235 130 : IleTyrSerIleAlaValValPheAlaSerIleProValLeuSerLysValLeuAspL : 149 |||||| !! !.!:!!:!!.!. ! ! !! !:!!! !||| |||||||||: IleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerPheValLeuAspV 481984 : ATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACG : 482041 150 : euIleAlaProLeuAsnGluSerArgProLysValTyrLeuTyrProAlaGluTyrPh : 168 !!|||!.!||||||||||||!!!||| !! ! !!:!! ! !! !|||||||| alIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMetGluTyrPh 482042 : TCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTT : 482098 169 : eValAspGlnAspLysTyrSerThrTyrIleTyrIleHisGlyTyrMetAlaLeuPro : 187 |:!!||||||.!.||||||||| !!:!||| .!!||| !!::.!.:!!!!!! ! eIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPheSerPheLeu 482099 : CATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTC : 482155 188 : IleThrMetThrLeuCysThrAlaTyrAspPheLeuTyrSerAlaCysGlyHisHisV : 207 :!!..! |||:!! !..!!.! !!: !||| ! ! !!! !.!.|||! ValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpLeuGluHisA 482156 : GTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACG : 482215 208 : alCysSerMetPheLysIle : 213 .!...|||:!!|||! :!! laAlaSerLeuPheThrLeu 482216 : CTGCAAGCTTGTTCACCCTT : 482235 vulgar: gi|861722542|gb|AKO90014.1| 129 213 . KQ414815.1 481983 482235 + 126 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481984 482235 126 + . gene_id 2 ; sequence gi|861722542|gb|AKO90014.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481984 482235 . + . KQ414815.1 exonerate:protein2genome:local exon 481984 482235 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481984 482235 126 + . alignment_id 2 ; Query gi|861722542|gb|AKO90014.1| ; Align 481984 130 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722542|gb|AKO90014.1| odorant receptor 50 [Microplitis mediator] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 87 -> 213 Target range: 475307 -> 475770 88 : LysValLysValLeuLeuGluAspIleGluArgTyrTyrGlnSerAspLeuCysLysS : 107 :!!|||||| !|||:!!||| ! |||:!! ! !!!::..!!!! ! ! !:!!. GlnValLysGlnLeuMetGluLysIleLysTyrAspTrpMetThrIleAsnAspGluG 475308 : CAGGTGAAGCAGTTAATGGAGAAGATAAAGTACGATTGGATGACGATCAACGACGAGG : 475365 108 : erGluLeuArgIleLeuTyrLysAspArgHisSerHisLysLysValIleSerValTy : 126 !!||||||||||||||| ...::: !:!!!!! ||| ! !!! ! !:!!!: lyGluLeuArgIleLeuLysAsnAsnAlaTyrArgGlyLysGlyPheThrIleIlePh 475366 : GAGAGCTTagaatcttgaaaaataacgCTTACAGAGGAAAAGGATTCACGATCATTTT : 475422 127 : rVal{P} >>>> Target Intron 1 >>>> {he}TyrIleTyrSerIleAla : 134 !!.!{!} 85 bp {!.} :!!||| !!! ! ! eAla{L}++ ++{eu}LeuValTyrProThrIle 475423 : CGCA{T}gt.........................ag{TA}CTGGTATACCCAACAATA : 475531 135 : ValValPheAlaSerIleProValLeuSerLysValLeuAspLeuIleAlaProLeuA : 154 !!..!.!. !! !:!!! ! !!! !||||||:!!||||||! !:!: !||||||| PheThrMetIleLeuLeuLeuPheSerSerLysIleLeuAspSerLeuLeuProLeuA 475532 : TTCACCATGATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTACCCCTGA : 475591 155 : snGluSerArgProLysValTyrLeuTyrProAlaGluTyrPheValAspGlnAspLy : 173 ||||||||||||||!.. !! !||| |||||||||:::::::!!.!.|| snGluSerArgProSerTrpSerLeuIleArgIleGluTyrPheIleAsnGluGlnLy 475592 : ACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaatagaatatttcataaacGAACAGAA : 475648 174 : sTyrSerThrTyrIleTyrIleHisGlyTyrMetAlaLeuProIleThrMetThrLeu : 192 ||||! ! ! ! ! |||:!! ! !:!:.!!:!!! !:!: ! ||| ! sTyrPheTyrLeuSerValIleTyrGlnThrValThrIleLeuLeuPheGlyThrThr 475649 : ATACTTTTATCTGAGCGTGATCTATCAGACTGTAACGATCCTTCTGTTTGGTACCACG : 475705 193 : CysThrAlaTyrAspPheLeuTyrSerAlaCysGlyHisHisValCysSerMetPheL : 212 ! !..!||| !!!: :!!!:!!!! !!! !!!.||| ! |||:::|||: TyrValAlaThrGluAlaIlePheThrMetTrpLeuGlnHisCysIleSerLeuPheG 475706 : TACGTAGCAACTGAAGCAATATTTACCATGTGGTTGCAACATTGCATaagtttatttg : 475765 213 : ysIle : 213 ::||| luIle 475766 : aaatt : 475770 vulgar: gi|861722542|gb|AKO90014.1| 87 213 . KQ414815.1 475307 475770 + 125 M 40 120 S 0 1 5 0 2 I 0 81 3 0 2 S 1 2 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475308 475770 125 + . gene_id 3 ; sequence gi|861722542|gb|AKO90014.1| ; gene_orientation + KQ414815.1 exonerate:protein2genome:local cds 475308 475428 . + . KQ414815.1 exonerate:protein2genome:local exon 475308 475428 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local splice5 475429 475430 . + . intron_id 1 ; splice_site "GT" KQ414815.1 exonerate:protein2genome:local intron 475429 475513 . + . intron_id 1 KQ414815.1 exonerate:protein2genome:local splice3 475512 475513 . + . intron_id 0 ; splice_site "AG" KQ414815.1 exonerate:protein2genome:local cds 475514 475770 . + . KQ414815.1 exonerate:protein2genome:local exon 475514 475770 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475308 475770 125 + . alignment_id 3 ; Query gi|861722542|gb|AKO90014.1| ; Align 475308 88 120 ; Align 475516 129 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722542|gb|AKO90014.1| odorant receptor 50 [Microplitis mediator] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 288 -> 336 Target range: 468624 -> 468768 289 : GlnSerLeuIleThrMetAsnGlnPheHisAspAlaValSerTyrIleValPheAlaP : 308 ||||||:!!:!!||||||:!!.!.|||.!.||| ! ! !! !!||| !!.!. !. GlnSerMetLeuThrMetAspAspPheGluAspLeuCysArgAsnIlePheLeuLeuM 468625 : CAGTCAATGCTAACAATGGACGACTTCGAAGATTTATGTCGTAACATATTCCTACTAA : 468682 309 : heGlyGlnLeuThrHisLeuPheLeuLeuAsnTyrGlnGlyGlnAsnIleIleAsnHi : 327 !.||||||||| !:::||||||::::::||||||...||||||:!!:!!:!!||||| etGlyGlnLeuGlyTyrLeuPheIleIleAsnTyrMetGlyGlnAspLeuValAsnHi 468683 : TGGGACAGCTTGGTtacttatttataattaattacatgGGACAGGATCTAGTCAATCA : 468739 328 : sSerGluAsnPheTyrAsnAspAlaTyr : 336 |!:!.!..!. !!!:!.!. |||||| sAsnAsnGluValPheGlnThrAlaTyr 468740 : CAATAACGAGGTTTTCCAAACAGCGTAT : 468768 vulgar: gi|861722542|gb|AKO90014.1| 288 336 . KQ414815.1 468624 468768 + 119 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 468625 468768 119 + . gene_id 4 ; sequence gi|861722542|gb|AKO90014.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 468625 468768 . + . KQ414815.1 exonerate:protein2genome:local exon 468625 468768 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 468625 468768 119 + . alignment_id 4 ; Query gi|861722542|gb|AKO90014.1| ; Align 468625 289 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887643|gb|AGG17938.1| olfactory receptor 5 [Microplitis mediator] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 148 -> 217 Target range: 485725 -> 485932 149 : LeuAspIleIleLeuProLeuAsnGluSerArgProLysIleGluLeuTyrHisThrA : 168 |||||||||:!::!!||||||||| ! !!!||||||::!! ! ! :!!:!!! LeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnSerG 485726 : CTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACTCGG : 485783 169 : spTyrLeuPheGlyProValLysTyrSerTrpValIleSerLeuHisGlnCysIleIl : 187 !::!!!!! !!! !! ! !||||||! !!:: !|||:!! !||| !:!!.! luHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLeuPh 485784 : AACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCTCTT : 485840 188 : eSerProPheProThrIleIleIleIleAlaThrGlySerLeuTyrCysAsnCysCys : 206 ! ! !.!! !.!!|||:!!:!!:!!::!||| ||| eValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIleIle 485841 : CGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCGATAATA : 485897 207 : GlnHisAlaCysGlyMetPheGluValIleGly : 217 ||||||.!!||||||:!!!:! !:!!:!!||| GlnHisThrCysGlyLeuTyrThrIleValGly 485898 : CAGCACACCTGTGGTTTGTATACAATCGTTGGG : 485932 vulgar: gi|452887643|gb|AGG17938.1| 148 217 . KQ414815.1 485725 485932 + 110 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485726 485932 110 + . gene_id 1 ; sequence gi|452887643|gb|AGG17938.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485726 485932 . + . KQ414815.1 exonerate:protein2genome:local exon 485726 485932 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485726 485932 110 + . alignment_id 1 ; Query gi|452887643|gb|AGG17938.1| ; Align 485726 149 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887643|gb|AGG17938.1| olfactory receptor 5 [Microplitis mediator] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 134 -> 216 Target range: 475527 -> 475773 135 : AlaIleLeuPheLeuValPheLeuProLeuIleProValThrLeuAspIleIleLeuP : 154 .!!|||!!! !:!!:!!!!.|||! !!!! !! !! !|||||| !:!:|||| ThrIlePheThrMetIleLeuLeuLeuPheSerSerLysIleLeuAspSerLeuLeuP 475528 : ACAATATTCACCATGATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTAC : 475585 155 : roLeuAsnGluSerArgProLysIleGluLeuTyrHisThrAspTyrLeuPheGlyPr : 173 ||||||||||||||||||||!.. ...||| ... :::|||......... roLeuAsnGluSerArgProSerTrpSerLeuIleArgIleGluTyrPheIleAsnGl 475586 : CCCTGAACGAGTCTCGTCCTAGCTGGTCTCTGAtacgaatagaatatttcataaacGA : 475642 174 : oValLysTyrSerTrpValIleSerLeuHisGlnCysIleIleSerProPheProThr : 192 ! !||||||! !!:::!!! ! !:!!:!!||| !:!!! ! !! !.!. ! ! uGlnLysTyrPheTyrLeuSerValIleTyrGlnThrValThrIleLeuLeuPheGly 475643 : ACAGAAATACTTTTATCTGAGCGTGATCTATCAGACTGTAACGATCCTTCTGTTTGGT : 475699 193 : IleIleIleIleAlaThrGlySerLeuTyrCysAsnCysCysGlnHisAlaCysGlyM : 212 ! !! !:!!||||||! !:!!:!!!:! !! !! ! ||||||..! ...: ThrThrTyrValAlaThrGluAlaIlePheThrMetTrpLeuGlnHisCysIleSerL 475700 : ACCACGTACGTAGCAACTGAAGCAATATTTACCATGTGGTTGCAACATTGCATaagtt : 475759 213 : etPheGluValIle : 216 ::||||||:::::: euPheGluIleVal 475760 : tatttgaaattgtt : 475773 vulgar: gi|452887643|gb|AGG17938.1| 134 216 . KQ414815.1 475527 475773 + 105 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475528 475773 105 + . gene_id 2 ; sequence gi|452887643|gb|AGG17938.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475528 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475528 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475528 475773 105 + . alignment_id 2 ; Query gi|452887643|gb|AGG17938.1| ; Align 475528 135 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887643|gb|AGG17938.1| olfactory receptor 5 [Microplitis mediator] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 136 -> 215 Target range: 457174 -> 457411 137 : LeuPheLeuValPheLeuProLeuIleProValThrLeuAspIleIleLeuProLeuA : 156 ||| !!:!!..! |||! !|||.!!|||:!! !|||||||||:!::!!||||||| LeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuA 457175 : CTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGA : 457232 157 : snGluSerArgProLysIleGluLeuTyrHisThrAspTyrLeuPheGlyProValLy : 175 |||||||||||||| !! ! ! .!!!!:|||!!! !!! ! ! !|| snGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLy 457233 : ACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAA : 457289 176 : sTyrSerTrpValIleSerLeuHisGlnCysIleIleSerProPheProThrIleIle : 194 ||||! ! !|||! ! !||| !! ! !! !.!! !!.!!! !! sTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThr 457290 : GTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACG : 457346 195 : IleIleAlaThrGlySerLeuTyrCysAsnCysCysGlnHisAlaCysGlyMetPheG : 214 :!!! !|||!.!! !|||||| ! !.. ! ! !|||!.!||||||:!!|||: LeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheL 457347 : TTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCA : 457406 215 : luVal : 215 !!:!! ysLeu 457407 : AGCTT : 457411 vulgar: gi|452887643|gb|AGG17938.1| 136 215 . KQ414815.1 457174 457411 + 104 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457175 457411 104 + . gene_id 3 ; sequence gi|452887643|gb|AGG17938.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457175 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457175 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457175 457411 104 + . alignment_id 3 ; Query gi|452887643|gb|AGG17938.1| ; Align 457175 137 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887643|gb|AGG17938.1| olfactory receptor 5 [Microplitis mediator] Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 115 Query range: 339 -> 398 Target range: 128551 -> 128300 340 : GlyAsnTrpTyrLysTyrSerAlaLysSerGlnLysMetPheIleSerMetIleValA : 359 !.!!!.||||||||| ! !!!..|||||||||||||||.!.:!:! !:!:!!: !| AlaLysTrpTyrLysAlaProValLysSerGlnLysMetLeuLeuPheLeuMetHisA 128551 : GCAAAATGGTACAAAGCCCCAGtaaaatctcaaaaaatgCTACTGTTCCTCATGCACA : 128494 360 : rgPheSerThrProCysSerIleThrLeuGlyLysLeuTyrArgValSerLeuGluCy : 378 |||||! ! !||||||!!!:!!! !||| !...||| ! !!.!.!! !|||! rgPheMetGluProCysArgLeuLysLeuLysSerLeuValAlaAlaGlyAsnGluLe 128493 : GATTCATGGAACCGTGCAGGCTAAAACTGAAATCCTTAGTTGCCGCGGGTAACGAGTT : 128437 379 : sPheSerThr >>>> Target Intron 1 >>>> IleMetLysThrThrMetS : 388 !:!:!!||| 74 bp :!::!!:!!||| !.!.| uTyrAlaThr++ ++MetValGlnThrGlyPheS 128436 : GTACGCTACCgt.........................agaTGGTGCAGACTGGTTTCT : 128333 389 : erTyrPheThrValIleAsnSerLeuArgGlu : 398 ||||||||||||||:!! !!||||||!:!||| erTyrPheThrValLeuTyrSerLeuGlnGlu 128332 : CCTACTTTACGGTTCTCTACTCGTTGCAAGAA : 128301 vulgar: gi|452887643|gb|AGG17938.1| 339 398 . KQ414817.1 128551 128300 - 115 M 42 126 5 0 2 I 0 70 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 128301 128551 115 - . gene_id 1 ; sequence gi|452887643|gb|AGG17938.1| ; gene_orientation + KQ414817.1 exonerate:protein2genome:local cds 128426 128551 . - . KQ414817.1 exonerate:protein2genome:local exon 128426 128551 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local splice5 128424 128425 . - . intron_id 1 ; splice_site "GT" KQ414817.1 exonerate:protein2genome:local intron 128352 128425 . - . intron_id 1 KQ414817.1 exonerate:protein2genome:local splice3 128352 128353 . - . intron_id 0 ; splice_site "ag" KQ414817.1 exonerate:protein2genome:local cds 128301 128351 . - . KQ414817.1 exonerate:protein2genome:local exon 128301 128351 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 128301 128551 115 - . alignment_id 1 ; Query gi|452887643|gb|AGG17938.1| ; Align 128552 340 126 ; Align 128352 382 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887643|gb|AGG17938.1| olfactory receptor 5 [Microplitis mediator] Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 133 -> 217 Target range: 130412 -> 130160 134 : IleAlaIleLeuPheLeuValPheLeuProLeuIleProValThrLeuAspIleIleL : 153 :!: !:!!||| !!!!|||||||||! !:!!:!!||| !! !|||! !||||||! LeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuProGlnIleLeuGlyIleIleS 130412 : TTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAATTTTAGGCATAATTT : 130355 154 : euProLeuAsnGluSerArgProLysIleGluLeuTyrHisThrAspTyrLeuPheGl : 172 !||||||!.!|||! !!.! !!!!.! ! !||| !!..|||!!:|||!!! !!! erProLeuThrGluIleAsnThrAsnLysLeuLeuValArgThrGluTyrPheValAs 130354 : CACCTCTAACCGAGATCAATACTAACAAATTACTCGTTCGAACCGAATACTTTGTCGA : 130298 173 : yProValLysTyrSerTrpValIleSerLeuHisGlnCysIleIleSerProPhePro : 191 ! ! ! ! |||! !!:::!!|||!!!:!!||| ! !||| !! ! !! ! ! pTyrLysAspTyrIleTyrLeuIleThrIleHisAlaThrIleAlaIleMetCysSer 130297 : CTACAAAGATTACATTTATCTAATCACGATCCACGCGACTATAGCAATAATGTGTAGT : 130241 192 : ThrIleIleIleIleAlaThrGlySerLeuTyrCysAsnCysCysGlnHisAlaCysG : 211 ..!! !!!: !|||::!!:!! !! ||| ..!||| ! !!| ValThrMetGlnIleSerSerAspIleLeuAsnAsnIlePheMetMetHisIleSerG 130240 : GTGACTATGCAAATTAGCAGCGATAttttgaataacatatttatGATGCACATCAGTG : 130181 212 : lyMetPheGluValIleGly : 217 |||||||||||||||||||| lyMetPheGluValIleGly 130180 : GAATGTTCGAGGTAATTGGG : 130161 vulgar: gi|452887643|gb|AGG17938.1| 133 217 . KQ414817.1 130412 130160 - 102 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130161 130412 102 - . gene_id 2 ; sequence gi|452887643|gb|AGG17938.1| ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130161 130412 . - . KQ414817.1 exonerate:protein2genome:local exon 130161 130412 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 130161 130412 102 - . alignment_id 2 ; Query gi|452887643|gb|AGG17938.1| ; Align 130413 134 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722542|gb|AKO90014.1| odorant receptor 50 [Microplitis mediator] Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 122 -> 215 Target range: 130439 -> 130160 123 : IleSerValTyrValPheTyrIleTyrSerIleAlaValValPheAlaSerIleProV : 142 .!!|||:!! ! ! ! !:! !!:!! !:!! !:!!! !|||!.!! !:!:! !: PheSerIleIleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnI 130439 : TTTTCCATTATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAA : 130382 143 : alLeuSerLysValLeuAspLeuIleAlaProLeuAsnGluSerArgProLysValTy : 161 !!||| !!:!!:!!|||! !:!!|||:!!||||||!.!|||! !!.! !!!!. !! leLeuProGlnIleLeuGlyIleIleSerProLeuThrGluIleAsnThrAsnLysLe 130381 : TTCTCCCGCAAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAACAAATT : 130325 162 : rLeuTyrProAlaGluTyrPheValAspGlnAspLysTyrSerThrTyrIleTyrIle : 180 ||| !! !.!!||||||||||||||| ! ! ! |||! ! ! ||| ||| uLeuValArgThrGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIle 130324 : ACTCGTTCGAACCGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATC : 130268 181 : HisGlyTyrMetAlaLeuProIleThrMetThrLeuCysThrAlaTyrAspPheLeuT : 200 |||!.! !!!:|||:!! ! !!:!:!!|||:!! ! !::! !|||...||| HisAlaThrIleAlaIleMetCysSerValThrMetGlnIleSerSerAspIleLeuA 130267 : CACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttga : 130208 201 : yrSerAlaCysGlyHisHisValCysSerMetPheLysIleAlaGly : 215 ::: ! |||:!! !!.!!||||||:!!:!! !||| snAsnIlePheMetMetHisIleSerGlyMetPheGluValIleGly 130207 : ataacatatttatGATGCACATCAGTGGAATGTTCGAGGTAATTGGG : 130161 vulgar: gi|861722542|gb|AKO90014.1| 122 215 . KQ414817.1 130439 130160 - 118 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130161 130439 118 - . gene_id 1 ; sequence gi|861722542|gb|AKO90014.1| ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130161 130439 . - . KQ414817.1 exonerate:protein2genome:local exon 130161 130439 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 130161 130439 118 - . alignment_id 1 ; Query gi|861722542|gb|AKO90014.1| ; Align 130440 123 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887641|gb|AGG17937.1| olfactory receptor 4 [Microplitis mediator] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 349 -> 392 Target range: 19545 -> 19897 350 : ValThrLeuValIleMetArgSerGlnIleSerCysGlnLeuThrAlaGlyLysIleLeu : 369 :!!! !||||||||||||||||||...:!! !!||| ||||||||| !! !.!!!!! LeuMetLeuValIleMetArgSerSerValProCysCysLeuThrAlaArgGlyPhePhe 19546 : TTGATGCTCGTTATCATGAGATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTC : 19603 370 : ValLeuSerMetGluThrPheThrSer >>>> Target Intron 1 >>>> IleV : 380 |||:!!|||:!:||||||!:!|||.!! 223 bp :!!: ValValSerLeuGluThrTyrThrGly++ ++ValL 19604 : GTCGTGTCTTTAGAAACGTACACAGGGgt.........................agGTTT : 19859 381 : alLysThrSerGlySerTyrPheThrMetLeuValGln : 392 !!!..|||:!!!.!||||||||||||:!!||| !||| euSerThrAlaAlaSerTyrPheThrLeuLeuLysGln 19860 : TAAGCACCGCAGCCTCATACTTTACGTTGCTGAAGCAA : 19897 vulgar: gi|452887641|gb|AGG17937.1| 349 392 . KQ414828.1 19545 19897 + 100 M 29 87 5 0 2 I 0 219 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 19546 19897 100 + . gene_id 1 ; sequence gi|452887641|gb|AGG17937.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 19546 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19546 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19897 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19897 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 19546 19897 100 + . alignment_id 1 ; Query gi|452887641|gb|AGG17937.1| ; Align 19546 350 87 ; Align 19856 379 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887635|gb|AGG17934.1| olfactory receptor 1 [Microplitis mediator] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 231 -> 277 Target range: 22914 -> 23052 232 : IleThrPheIleAspCysValArgGlyHisGlnAspAlaIleLeuPheAlaGluArgVal : 251 |||! !|||! :!!|||:!!!:! !||||||! !||| !|||..!! !! !:!! IleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeu 22915 : ATCAAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTC : 22972 252 : GluAsnThrIleAsnValLeuValLeuGlyGlnPheValIleSerThrGlyLeuValCys : 271 |||.!...!.!!!..|||:!!|||||||||||| !!:!!!!:|||!:! !|||:!!||| GluGluValPheThrValIleValLeuGlyGlnValLeuMetSerSerIleLeuIleCys 22973 : GAAGAGGTATTCACGGTAATCGTACTCGGACAAGTCCTAATGTCTAGCATATTAATTTGC : 23032 272 : PheAlaGlyPheGlnIle : 277 ||| !|||!:!|||:!! PheIleGlyTyrGlnVal 23033 : TTCATCGGGTATCAAGTA : 23052 vulgar: gi|452887635|gb|AGG17934.1| 231 277 . KQ414828.1 22914 23052 + 104 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22915 23052 104 + . gene_id 1 ; sequence gi|452887635|gb|AGG17934.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 22915 23052 . + . KQ414828.1 exonerate:protein2genome:local exon 22915 23052 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22915 23052 104 + . alignment_id 1 ; Query gi|452887635|gb|AGG17934.1| ; Align 22915 232 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887635|gb|AGG17934.1| olfactory receptor 1 [Microplitis mediator] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 231 -> 284 Target range: 32993 -> 33152 232 : IleThrPheIleAspCysValArgGlyHisGlnAspAlaIleLeuPheAlaGluArgVal : 251 |||! !|||! :!!|||:!!!:! !||||||! ||| |||...||| ::! IleLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysGluIleLeu 32994 : ATCAAGTTTAAGAATTGCATTCAACAACATCAGGCACTaattgaattttgtgaaatactC : 33051 252 : GluAsnThrIleAsnValLeuValLeuGlyGlnPheValIleSerThrGlyLeuValCys : 271 |||.!...!.!!!..|||:!!|||||||||||| ! :!!!!:! !!:! !:!!:!!||| GluGluValPheThrValIleValLeuGlyGlnValLeuMetPheSerIleIleIleCys 33052 : GAAGAGGTATTCACGGTAATCGTACTCGGACAAGTACTAATGTTTAGCATAATAATTTGC : 33111 272 : PheAlaGlyPheGlnIleThrGluMetAlaGluAspArg : 284 |||||||||!:!:!!:!! ! !:!!::! !!:||| PheAlaGlyTyrGluValLeuLeuValSerIleGluArg 33112 : TTCGCCGGGTATGAAGTACTCCTGGTGAGTATCGAACgc : 33152 vulgar: gi|452887635|gb|AGG17934.1| 231 284 . KQ414828.1 32993 33152 + 104 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32994 33152 104 + . gene_id 2 ; sequence gi|452887635|gb|AGG17934.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 32994 33152 . + . KQ414828.1 exonerate:protein2genome:local exon 32994 33152 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32994 33152 104 + . alignment_id 2 ; Query gi|452887635|gb|AGG17934.1| ; Align 32994 232 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887635|gb|AGG17934.1| olfactory receptor 1 [Microplitis mediator] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 235 -> 277 Target range: 18249 -> 18375 236 : AspCysValArgGlyHisGlnAspAlaIleLeuPheAlaGluArgValGluAsnThrIle : 255 |||! !:!!||| !||||||:!! !||| !!:!..!.!.!:!:!!|||!!...!.!! AspTyrIleArgGlnHisGlnAsnLeuIleAlaTyrCysAsnLysLeuGluLysValPhe 18250 : GATTATATCAGACAGCATCAGAACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGTTC : 18307 256 : AsnValLeuValLeuGlyGlnPheValIleSerThrGlyLeuValCysPheAlaGlyPhe : 275 |||:!!:!!||||||||||||!!.:!!!!:! !!:! !|||:!!|||.!!! !|||||| AsnIleIleValLeuGlyGlnLeuLeuMetPheSerMetLeuIleCysLeuAspGlyPhe 18308 : AATATCATTGTTCTGGGGCAATTGTTAATGTTCAGCATGTTGATCTGTCTCGATGGATTT : 18367 276 : GlnIle : 277 |||||| GlnIle 18368 : CAGATA : 18375 vulgar: gi|452887635|gb|AGG17934.1| 235 277 . KQ414828.1 18249 18375 + 100 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 18250 18375 100 + . gene_id 3 ; sequence gi|452887635|gb|AGG17934.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 18250 18375 . + . KQ414828.1 exonerate:protein2genome:local exon 18250 18375 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 18250 18375 100 + . alignment_id 3 ; Query gi|452887635|gb|AGG17934.1| ; Align 18250 236 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887637|gb|AGG17935.1| olfactory receptor 2 [Microplitis mediator] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 279 -> 326 Target range: 22917 -> 23058 280 : ArgLeuLysGlnCysIleLysHisHisGlnLysIleValGlnMetMetValValLeuAsn : 299 !:!!!!|||.!.||||||:!!!!.|||||| !:!!:!!:!!.!. !.!..!|||.!. LysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGlu 22918 : AAGTTTAAGAATTGCATTCAACAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAA : 22975 300 : AspCysPheSerPheCysValIleValGlnIleMetThrSerThrIleLeuIleCysLeu : 319 !!: |||!!! ! !|||:!!! !|||:!!:!:! !|||!:!||||||||||||!!! GluValPheThrValIleValLeuGlyGlnValLeuMetSerSerIleLeuIleCysPhe 22976 : GAGGTATTCACGGTAATCGTACTCGGACAAGTCCTAATGTCTAGCATATTAATTTGCTTC : 23035 320 : AsnGlyPheGlnIleLeuLeu : 326 ! !|||!:!|||:!!|||||| IleGlyTyrGlnValLeuLeu 23036 : ATCGGGTATCAAGTACTCCTG : 23058 vulgar: gi|452887637|gb|AGG17935.1| 279 326 . KQ414828.1 22917 23058 + 109 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22918 23058 109 + . gene_id 1 ; sequence gi|452887637|gb|AGG17935.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 22918 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22918 23058 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22918 23058 109 + . alignment_id 1 ; Query gi|452887637|gb|AGG17935.1| ; Align 22918 280 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722542|gb|AKO90014.1| odorant receptor 50 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 140 Query range: 129 -> 215 Target range: 1243857 -> 1243599 130 : IleTyrSerIleAlaValValPheAlaSerIleProValLeuSerLysValLeuAs : 148 :!:!:!! !.!!:!!:!!:!!|||!.!! !.!!|||:!!:!! !! !:!!||||| LeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleLeuAs 1243857 : TTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGA : 1243803 149 : pLeuIleAlaProLeuAsnGluSerArgProLysValTyrLeuTyrProAlaGluT : 167 |:!!:!!:!!||||||||||||!!!||| !!::!:!! ::: :::| pValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuGlnT 1243802 : TGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgcaat : 1243746 168 : yrPheValAspGlnAspLysTyrSerThrTyrIleTyrIleHisGlyTyrMetAla : 185 ||.!. !!|||...:::||| :::|||:!!:!! ! ! !..! yrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCys 1243745 : accTGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGCTGGTGC : 1243692 186 : LeuProIleThrMetThrLeuCysThrAlaTyrAspPheLeuTyrSerAlaCysGl : 204 ! ! !!!:||||||! !:!! ! !.!! ||| |||||| !!.! ! SerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValValIleIl 1243691 : TCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCAT : 1243635 205 : yHisHisValCysSerMetPheLysIleAlaGly : 215 !||||||..!|||.!!:!:||| :!!..!||| eHisHisThrCysGlyLeuPheAlaValCysGly 1243634 : TCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: gi|861722542|gb|AKO90014.1| 129 215 . KQ414851.1 1243857 1243599 - 140 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243857 140 - . gene_id 1 ; sequence gi|861722542|gb|AKO90014.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243857 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243857 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243857 140 - . alignment_id 1 ; Query gi|861722542|gb|AKO90014.1| ; Align 1243858 130 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722542|gb|AKO90014.1| odorant receptor 50 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 129 -> 215 Target range: 1224285 -> 1224024 130 : IleTyrSerIleAlaValValPheAlaSerIleProValLeuSerLysValLeuAs : 148 :!:!::! !:!! !:!!|||!:! !|||.!!|||:!!:!!!:! !|||||||| LeuTrpIleValLeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAs 1224285 : TTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGA : 1224231 149 : pLeuIleAlaProLeuAsnGluSerArgProLysValTyrLeuTyrProAlaGluT : 167 |:!!:!!|||||||||||||||!!!||||||::: ! !||| !|||!.!...| pValValAlaProLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerT 1224230 : TGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTT : 1224174 168 : yr<->PheValAspGlnAspLysTyrSerThrTyrIleTyrIleHisGlyTyrMet : 184 || |||:!!|||:!! !!:!!:!!! ! ! !:!: !!.!!||| !|||! yrIlePheIleAspGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThr 1224173 : ACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACC : 1224120 185 : AlaLeuProIleThrMetThrLeuCysThrAlaTyrAspPheLeuTyrSerAlaCy : 203 ::!:!! ! ! ! !! !:!! ! !||| |||.!.||||||! !.!! SerValIleSerCysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIl 1224119 : AGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTAT : 1224063 204 : sGlyHisHisValCysSerMetPheLysIleAlaGly : 215 ! ! !|||:!!|||.!!:!!||| !:!:..!||| eIlePheHisLeuCysGlyLeuPheAlaValCysGly 1224062 : CATTTTTCACCTTTGCGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: gi|861722542|gb|AKO90014.1| 129 215 . KQ414851.1 1224285 1224024 - 139 M 38 114 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224285 139 - . gene_id 2 ; sequence gi|861722542|gb|AKO90014.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224285 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224285 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224285 139 - . alignment_id 2 ; Query gi|861722542|gb|AKO90014.1| ; Align 1224286 130 114 ; Align 1224169 168 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722542|gb|AKO90014.1| odorant receptor 50 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 115 -> 215 Target range: 1234362 -> 1234059 116 : ArgHisSerHisLysLysValIleSerValTyrValPheTyrIleTyrSerIleAl : 134 ||| ||||||:!! ! !||| ! !!!:! ! ! :!! |||.!! ArgLeuSerHisGluGlySerIleValPhePheSerAspThrLeuLeuSerPheMe 1234362 : CGTTTATCACACGAAGGATCGATCGTGTTCTTCTCAGATACATTACTGTCCTTCAT : 1234308 135 : aValValPheAlaSerIleProValLeuSerLysValLeuAspLeuIleAlaProL : 153 !||||||||| ! !:!!|||:!!:!!! ! ! !!||||||:!!:!! !|||| tValValPheLeuLeuValProLeuValPheProPheLeuAspValValLeuProL 1234307 : GGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGTCGTCCTTCCGT : 1234251 154 : euAsnGluSerArgProLysValTyrLeuTyrProAlaGluTyr<->PheValAsp : 170 ||||||||!!!||||||::! ! ! !!:! !!.!.!.||| !:! !!||| euAsnGluThrArgProArgGlnGlnGlyPheArgValAsnTyrLeuTyrPheAsp 1234250 : TAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTATATTTCGAC : 1234197 171 : GlnAspLysTyrSerThrTyrIleTyrIleHisGlyTyrMetAlaLeuProIleTh : 189 :!!! ! |||! ! ! !:!:|||.!!!!. ! ! !!.! ! !:!!.. GluAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaValValVa 1234196 : GAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAGTCGTTGT : 1234140 190 : rMetThrLeuCysThrAlaTyrAspPheLeuTyrSerAlaCysGlyHisHisValC : 208 !:!:! !:!! ! !.!! |||! ||||||! ! ! !||||||!.! lValMetIleIleIleThrValAspSerLeuTyrMetIleIleIleHisHisAlaS 1234139 : TGTCATGATCATAATCACCGTAGACTCGTTGTACATGATAATAATTCACCATGCCA : 1234083 209 : ysSerMetPheLysIleAlaGly : 215 !!.!!|||||| :!:..!||| erGlyMetPheAlaValCysGly 1234082 : GCGGAATGTTCGCCGTGTGCGGG : 1234060 vulgar: gi|861722542|gb|AKO90014.1| 115 215 . KQ414851.1 1234362 1234059 - 116 M 52 156 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234362 116 - . gene_id 3 ; sequence gi|861722542|gb|AKO90014.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234362 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234362 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234362 116 - . alignment_id 3 ; Query gi|861722542|gb|AKO90014.1| ; Align 1234363 116 156 ; Align 1234204 168 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722542|gb|AKO90014.1| odorant receptor 50 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 129 -> 215 Target range: 1240082 -> 1239821 130 : IleTyrSerIleAlaValValPheAlaSerIleProValLeuSerLysValLeuAs : 148 :!!!:!|||::: :::||| !:!!|||:::... :::||||| LeuPheSerValLeuPheIlePheLeuValValProIlePheProProLeuLeuAs 1240082 : TTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcctcctcttctggA : 1240028 149 : pLeuIleAlaProLeuAsnGluSerArgProLysValTyrLeuTyrProAlaGluT : 167 |:!!:!! !||||||||||||!!!||| !!::: :::::: ......| pIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIlePheLysValAsnT 1240027 : CATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatattcaaagttaaTT : 1239971 168 : yr<->PheValAspGlnAspLysTyrSerThrTyrIleTyrIleHisGlyTyrMet : 184 || .!!:!!|||::!|||:!! ! :!! ! !! !|||.!!||| !! ! ! yrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPheHisLeuSerTrp 1239970 : ACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTTCACTTGTCTTGG : 1239917 185 : AlaLeuProIleThrMetThrLeuCysThrAlaTyrAspPheLeuTyrSerAlaCy : 203 .!! ! !! ! ! !! !! ! !::!! !!:!!.:!!||| ! ! ThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIleTyrValLeuLe 1239916 : ACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGTCCTTCT : 1239860 204 : sGlyHisHisValCysSerMetPheLysIleAlaGly : 215 ! !||||||..! !!.!!:!!||| :!:|||||| uIleHisHisThrSerGlyLeuPheAlaValAlaGly 1239859 : TATTCATCATACCAGCGGTCTGTTTGCTGTGGCTGgg : 1239822 vulgar: gi|861722542|gb|AKO90014.1| 129 215 . KQ414851.1 1240082 1239821 - 104 M 38 114 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240082 104 - . gene_id 4 ; sequence gi|861722542|gb|AKO90014.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239822 1240082 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240082 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240082 104 - . alignment_id 4 ; Query gi|861722542|gb|AKO90014.1| ; Align 1240083 130 114 ; Align 1239966 168 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887643|gb|AGG17938.1| olfactory receptor 5 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 137 Query range: 130 -> 217 Target range: 1243857 -> 1243599 131 : IleTyrValIleAlaIleLeuPheLeuValPheLeuProLeuIleProValThrLe : 149 :!:!:! !.!!:!!|||:!!|||:!!:!!||| |||||||||||| !! !|| LeuPheTyrPheSerIleIlePheValLeuPhe---ProLeuIleProProIleLe 1243857 : TTGTTCTATTTCTCGATAATATTCGTATTATTT---CCATTAATTCCGCCAATATT : 1243806 150 : uAspIleIleLeuProLeuAsnGluSerArgProLysIleGluLeuTyrHisThrA : 168 ||||:!!:!!! !||||||||||||!!!||| !!::!||||||::: . uAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuG 1243805 : GGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgc : 1243749 169 : spTyrLeuPheGlyProValLysTyrSerTrpValIleSerLeuHisGlnCysIle : 186 ..|||||||||! ! ||| ::: ::: :!!:!! !! lnTyrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrp 1243748 : aataccTGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGCTGG : 1243695 187 : IleSerProPheProThrIleIleIleIleAlaThrGlySerLeuTyrCysAsnCy : 205 !||| !.!. !!! !!!::!!||||||.!!! !! !:!!|||||| CysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValValIl 1243694 : TGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAAT : 1243638 206 : sCysGlnHisAlaCysGlyMetPheGluValIleGly : 217 ! !!!.|||.!!||||||:!:|||! ||| !||| eIleHisHisThrCysGlyLeuPheAlaValCysGly 1243637 : CATTCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: gi|452887643|gb|AGG17938.1| 130 217 . KQ414851.1 1243857 1243599 - 137 M 11 33 G 1 0 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243857 137 - . gene_id 1 ; sequence gi|452887643|gb|AGG17938.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243857 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243857 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243857 137 - . alignment_id 1 ; Query gi|452887643|gb|AGG17938.1| ; Align 1243858 131 33 ; Align 1243825 143 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887643|gb|AGG17938.1| olfactory receptor 5 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 117 -> 217 Target range: 1229527 -> 1229224 118 : LysIleAsnArgLeuPheValLeuValTyrSerIleTrpIleTyrValIleAlaIl : 136 :::||| ||| ! ! !:!!|||!:!|||:!! !! :!!.!!|||!! ArgIleLeuArgGluSerSerIleValPheSerLeuAspAlaLeuLeuPheAlaMe 1229527 : CGCATATTACGCGAAAGTTCCATCGTATTTTCCTTAGATGCTTTACTCTTCGCAAT : 1229473 137 : eLeuPheLeuValPheLeuProLeuIleProValThrLeuAspIleIleLeuProL : 155 :! ! !!!!!:!!.!.:!!||||||.!! ! !.!!|||||||||:!!||||||! tCysValPheLeuLeuValProLeuPheGlyProAlaLeuAspIleValLeuProS 1229472 : GTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCCAGCCCTGGACATCGTCCTTCCAT : 1229416 156 : euAsnGluSerArgProLysIleGluLeuTyrHisThrAspTyr<->LeuPheGly : 172 !||||||!!!||||||::! !:!!|||!:!.....!:!!||| :!!|||! ! erAsnGluThrArgProArgGlnGlnLeuPheArgValAsnTyrIleIlePheAsp 1229415 : CAAATGAAACTAGGCCACGGCAACAACTGTTCAGAGTTAACTATATAATTTTCGAC : 1229362 173 : ProValLysTyrSerTrpValIleSerLeuHisGlnCysIleIleSerProPhePr : 191 ! !!.! ! |||! !!:: !:!:! !:!!!!. !! ! !!!! ! !!! GlnAlaAspTyrPhePheTyrValTyrIleGlnLeuPheTrpCysThrIleValLe 1229361 : CAAGCAGACTATTTTTTCTACGTGTATATTCAATTGTTTTGGTGTACAATCGTTCT : 1229305 192 : oThrIleIleIleIleAlaThrGlySerLeuTyrCysAsnCysCysGlnHisAlaC : 210 !..!!!: !||||||.!!..!! !||||||||| ! ! ! ! |||||| uValMetAlaIleIleThrValAspSerLeuTyrMetIleIleIleTyrHisAlaS 1229304 : TGTAATGGCCATTATCACCGTAGATTCATTGTACATGATCATAATTTACCATGCCA : 1229248 211 : ysGlyMetPheGluValIleGly : 217 !!|||||||||! :!! !||| erGlyMetPheAlaIleCysGly 1229247 : GCGGAATGTTCGCTATATGCGGG : 1229225 vulgar: gi|452887643|gb|AGG17938.1| 117 217 . KQ414851.1 1229527 1229224 - 120 M 52 156 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229527 120 - . gene_id 2 ; sequence gi|452887643|gb|AGG17938.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229225 1229527 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229527 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229527 120 - . alignment_id 2 ; Query gi|452887643|gb|AGG17938.1| ; Align 1229528 118 156 ; Align 1229369 170 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887643|gb|AGG17938.1| olfactory receptor 5 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 124 -> 217 Target range: 1224303 -> 1224024 125 : LeuValTyrSerIleTrpIleTyrValIleAlaIleLeuPheLeuValPheLeuPr : 143 |||::::::||| !:!:!:::!!:!! !:!!:!!!:!:!! !||| || LeuIlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPhe---Pr 1224303 : ttaattttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTT---CC : 1224252 144 : oLeuIleProValThrLeuAspIleIleLeuProLeuAsnGluSerArgProLysI : 162 ||||||| ! !..!||||||:!!:!! !||||||||||||!!!||||||:::! oLeuIleAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgA 1224251 : ATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTA : 1224195 163 : leGluLeuTyrHisThrAspTyrLeuPhe<->GlyProValLysTyrSerTrpVal : 179 ||| !! ..!..!|||:!!||| ! ! ! !:!!:!!! !!:: ! rgLeuLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSer 1224194 : GGCTTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGC : 1224141 180 : IleSerLeuHisGlnCysIleIleSerProPheProThrIleIleIleIleAlaTh : 198 :!:!:!!!!|||! !! !! !! ! ! !! ! ! !!!:!!:|||||||||.. ValAsnPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaVa 1224140 : GTGAATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGT : 1224084 199 : rGlySerLeuTyrCysAsnCysCysGlnHisAlaCysGlyMetPheGluValIleG : 217 !! !! !|||||| !!.! ! ! ||| !||||||:!!|||! !||| !| lAspMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaValCysG 1224083 : GGATATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTGTGTG : 1224027 218 : ly : 217 || ly 1224026 : GG : 1224025 vulgar: gi|452887643|gb|AGG17938.1| 124 217 . KQ414851.1 1224303 1224024 - 112 M 17 51 G 1 0 M 29 87 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224303 112 - . gene_id 3 ; sequence gi|452887643|gb|AGG17938.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224303 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224303 . - . insertions 3 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224303 112 - . alignment_id 3 ; Query gi|452887643|gb|AGG17938.1| ; Align 1224304 125 51 ; Align 1224253 143 87 ; Align 1224163 172 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887643|gb|AGG17938.1| olfactory receptor 5 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 135 -> 217 Target range: 1234308 -> 1234059 136 : IleLeuPheLeuValPheLeuProLeuIleProValThrLeuAspIleIleLeuPr : 154 !!::!! !!!!!:!!.!.:!!||||||:!! ! ! !||||||:!!:!!||||| MetValValPheLeuLeuValProLeuValPheProPheLeuAspValValLeuPr 1234308 : ATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATGTCGTCCTTCC : 1234254 155 : oLeuAsnGluSerArgProLysIleGluLeuTyrHisThrAspTyrLeu<->PheG : 172 ||||||||||!!!||||||::! :!! !!:!.....!:!!|||||| |||! oLeuAsnGluThrArgProArgGlnGlnGlyPheArgValAsnTyrLeuTyrPheA 1234253 : GTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACTATCTATATTTCG : 1234197 173 : lyProValLysTyrSerTrpValIleSerLeuHisGlnCysIleIleSerProPhe : 190 ! !!.! ! |||! !!:: !:!:! !!!!!!. !..! !:!! ! !! spGluAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrpGlyAlaValVal 1234196 : ACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGGTGCAGTCGTT : 1234143 191 : ProThrIleIleIleIleAlaThrGlySerLeuTyrCysAsnCysCysGlnHisAl : 209 !..!!!:|||||||||.!!..!! !||||||||| ! !!!.||||| ValValMetIleIleIleThrValAspSerLeuTyrMetIleIleIleHisHisAl 1234142 : GTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGATAATAATTCACCATGC : 1234086 210 : aCysGlyMetPheGluValIleGly : 217 | !!|||||||||! ||| !||| aSerGlyMetPheAlaValCysGly 1234085 : CAGCGGAATGTTCGCCGTGTGCGGG : 1234060 vulgar: gi|452887643|gb|AGG17938.1| 135 217 . KQ414851.1 1234308 1234059 - 110 M 35 105 G 0 3 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234308 110 - . gene_id 4 ; sequence gi|452887643|gb|AGG17938.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234308 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234308 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234308 110 - . alignment_id 4 ; Query gi|452887643|gb|AGG17938.1| ; Align 1234309 136 105 ; Align 1234201 171 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887639|gb|AGG17936.1| olfactory receptor 3 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 143 Query range: 133 -> 216 Target range: 1224273 -> 1224024 134 : ValIleIleTyrIleMetAspProValLeuSerAlaIleValAsnIleIleSerLy : 152 :!!:!!:!!|||!!:! !|||:!!:!!!:! !!:!!:!!:!!:!!:!!:!! LeuLeuValTyrMetSerPheProLeuIleAsnProValLeuAspValValAlaPr 1224273 : CTGTTAGTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCC : 1224219 153 : sSerAsnAspSerMetProLeuLysPheSerValProMetArgPheIleMetPheA : 171 !! !|||!!:!!! |||! !!:!.!!! !:!!|||:!:!!!!:!|||.!..!.| oLeuAsnGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleA 1224218 : GTTAAACGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAG : 1224162 172 : spGluGluLysTyrTyrTrpLeuLeuLeuIleLeuSerAsnThrCysValIlePhe : 189 ||||| ! :!!:!!!:!!:: !:!! !.!!! ! ! !!||| !!||||||! ! spGluTyrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSer 1224161 : ACGAGTACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCC : 1224108 190 : IleIleAsnValIleIleCysCysAspValIlePheIleThrValValGlnHisVa : 208 ! ! :!!||||||..! |||:!!:!!!:!||||||:!!:!! |||:! CysGlyMetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLe 1224107 : TGCGGGATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCT : 1224051 209 : lCysGlyIlePheAlaValValGly : 216 !||||||:!:||||||||| !||| uCysGlyLeuPheAlaValCysGly 1224050 : TTGCGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: gi|452887639|gb|AGG17936.1| 133 216 . KQ414851.1 1224273 1224024 - 143 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224273 143 - . gene_id 1 ; sequence gi|452887639|gb|AGG17936.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224273 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224273 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224273 143 - . alignment_id 1 ; Query gi|452887639|gb|AGG17936.1| ; Align 1224274 134 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887639|gb|AGG17936.1| olfactory receptor 3 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 134 -> 216 Target range: 1243842 -> 1243599 135 : IleIleTyrIleMetAspProValLeuSerAlaIleValAsnIleIleSerLysSe : 153 ||||||!:!:!!:!: !|||:!!:!! !! !!|||:!!:!!:!!:!!||| ! IleIlePheValLeuPheProLeuIleProProIleLeuAspValValSerProLe 1243842 : ATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCT : 1243788 154 : rAsnAspSerMetProLeuLysPheSerValProMetArgPheIleMetPheAspG : 172 !|||!!:!!! !!! !! ! ::: ::::::::: :!!|||||| uAsnGluThrArgSerArgIleGluValIleLysLeuGlnTyr---LeuPheAspM 1243787 : TAATGAGACTCGATCTCGGATAGaagtaataaaattgcaatac---cTGTTCGACA : 1243734 173 : luGluLysTyrTyrTrpLeuLeuLeuIleLeuSerAsnThrCysValIlePheIle : 190 |||||| :::::: ||| :!!! !!!!..! !||| !.!!.!.! ! etGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCysSerPheMetThr 1243733 : tggagaagaatttttattcattatacGTCTACACTGGCTGGTGCTCGTTCATGACC : 1243680 191 : IleAsnValIleIleCysCysAspValIlePheIleThrValValGlnHisValCy : 209 !!:! ||||||||| ! |||!.!:!!!:!:!:..!:!!:!!!!.|||..!|| MetMetValIleIleThrIleAspAlaLeuTyrValValIleIleHisHisThrCy 1243679 : ATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCATTCATCACACGTG : 1243623 210 : sGlyIlePheAlaValValGly : 216 ||||:!!||||||||| !||| sGlyLeuPheAlaValCysGly 1243622 : TGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: gi|452887639|gb|AGG17936.1| 134 216 . KQ414851.1 1243842 1243599 - 127 M 33 99 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243842 127 - . gene_id 2 ; sequence gi|452887639|gb|AGG17936.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243842 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243842 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243842 127 - . alignment_id 2 ; Query gi|452887639|gb|AGG17936.1| ; Align 1243843 135 99 ; Align 1243744 169 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887639|gb|AGG17936.1| olfactory receptor 3 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 341 -> 380 Target range: 1242784 -> 1242667 342 : TrpTyrGluAsnSerValLysSerArgLysLeuLeuIleLeuMetThrLeuArgSe : 360 ||||||:!!!.. !!||| !! !!:!|||:!!||| !:!!:!: !:!!||||| TrpTyrGlnThrProValTrpIleGlnLysIleLeuHisIleValGlnIleArgSe 1242784 : TGGTATCAAACACCGGTGTGGATTCAAAAAATACTTCATATAGTACAAATAAGGTC : 1242730 361 : rGlnValProCysLysLeuThrAlaGlyLysIleMetGluLeuSerIleGluAsnP : 379 | !||||||||||||..!|||||| !:!! |||:!!!:!|||||||||| rGlyLysProCysLysLeuValAlaGlyGlyLeuTyrGluMetAsnIleGluAsnP 1242729 : TGGCAAACCGTGCAAATTGGTAGCAGGAGGATTATACGAAATGAACATTGAGAATT : 1242673 380 : heGly : 380 ||||| heGly 1242672 : TTGGA : 1242668 vulgar: gi|452887639|gb|AGG17936.1| 341 380 . KQ414851.1 1242784 1242667 - 105 M 39 117 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1242668 1242784 105 - . gene_id 3 ; sequence gi|452887639|gb|AGG17936.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1242668 1242784 . - . KQ414851.1 exonerate:protein2genome:local exon 1242668 1242784 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1242668 1242784 105 - . alignment_id 3 ; Query gi|452887639|gb|AGG17936.1| ; Align 1242785 342 117 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722545|gb|AKO90015.1| odorant receptor 51 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 295 Query range: 0 -> 271 Target range: 217114 -> 217924 1 : MetLysArgLysGluLysLysAsnSerGlnThrLysLysLysIleAsnLeuThrValP : 20 :!: !! !!!.:!!:!!:!!::! !!::!||| ! ! :!: ... ...::: LeuAlaThrAsnLysGluGlnSerProArgThrAspTyrGluTyrGluLysAsnIleA 217115 : CTTGCAACAAACAAGGAACAATCCCCCAGAACCGACTACGAgtacgagaaaaatataa : 217172 21 : heAspAspIleGluTyrThrGlnGlnLeuLeuSerIleLeuAlaIleTrpProLeuVa : 39 ..!|||:!!!::!.!!:: !||||||!.! :!!!.!:!!|||||| ! snLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpProAsnSe 217173 : atctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGCCAAACTC : 217229 40 : lThrLysSerSerThrIleLysLysIleLeuSerTrpIleHisLeuLeuValIleIle : 58 ! !! !!!!!!! ! !::!|||||||||! ! :!: ! !:!! ! ! rArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLeuCysTyr 217230 : ACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTTATGCTAC : 217286 59 : GlySerLeuIleTrpAsnIleLeuPheArgCysIlePheIleTyrIleTyrValLysL : 78 |||! !:!!! !!:: .!!:!! !!! !!!:!:!:!:!:!:!! ! |||:!! GlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeuGluValGluA 217287 : GGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAAGTTGAAG : 217346 79 : ysPheAspAspGlnIleMetLeuIleGlyProThrPhePheArgValIleIleLeuLe : 97 ! .!! !!|||:!!:!:! |||.!!|||||| !.!!||| !!|||!!: !!!:! spLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValMetAlaPheVa 217347 : ATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGGCGTTCGT : 217403 98 : uLysTyrLeuAlaIleIleTyrHisArgLysThrIleLysLysIlePheAsnHisIle : 116 !||||||! !:!!:!:||| !|||!:! ! !|||::::!! ! ! !.....||| lLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCysValArgArgIle 217404 : CAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAGAAGAATC : 217460 117 : GlnThrAspArgSerGlyValGluCysGlnGluGlnGlnAsnIleMetMetArgAsnV : 136 :!! !||| !!!!!..!|||..!|||:!!:!!.!.::!.!. |||!!: !|||! GluArgAspTrpArgAsnValArgCysGluLysAspArgGluAlaMetIleValAsnA 217461 : GAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGATAGTGAACG : 217520 137 : alGlnIleAsnArgHisValThrLeuValPheAlaIlePheMetTyrSerSerGlyTh : 155 .!.!..!!..!||| ! :!!..!|||:!!! !.!!.!!||||||||||||... .. laAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrSerGlyPheVa 217521 : CGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAGCggtttcgt : 217577 156 : rPheTyrAsnPheValMetProHisIleLeuProLeuLeuThrHisArgGlySerArg : 174 .|||||| ..!!.!!!:||| !! !:!! ! !:!! ! ..!..!.!!!.! lPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGluAsnGlyAsn 217578 : tttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAGAATGGAAAC : 217634 175 : AsnThrSerGlnArgLeuThrIlePheProGlyTyrAsnValLeuSerAspValGlnL : 194 !|||! ! ! !||| :!:|||||| ! !!. !:!!! !|||..!!:: LeuThrPheIleProLeu---ValPheProPheThrLysTyrIleIleAspThrArgT 217635 : CTTACCTTTATTCCGTTG---GTGTTTCCTTTTACGAAGTATATCATCGATACTCGTT : 217691 195 : ysSerProIleTyrGluIleThrPhePhePheHisIlePheSerValPheAlaGlyPh : 213 ! !!!|||! !!||||||..!||||||.!!!!.:!:.!!:!!! ! ! ! ! yrThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLeuMetHi 217692 : ACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGATGCA : 217748 214 : eSerValLeuValLeuAlaCysAsnIleAlaValValLeuValThrHisAlaCysGly : 232 !.!!:!! ! ! !||||||!:!:!:|||!.!!.!!!!!.!..!|||||||||||| sGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAlaCysGly 217749 : CGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTGCGGC : 217805 233 : GlnIleGlnIleIleIleGlyGlnLeuAsnSerLeuIleAspAspPheThrAsnAsnG : 252 ||||||:!!:!::!:!!:..! !|||.!. !|||||||||! ! .!!:!!! . GlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgAlaAspMetS 217806 : CAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGAGCGGATATGA : 217865 253 : luLysThrLeuTyrIleLysPheSerSerIleIleSerArgHisIleArgValIleGl : 271 .. ! |||:!! !! !!:!.!!:!!||||||:!!|||!:!|||:!!|||:!!:!!:! erAspThrValAspGlyArgIleAlaSerIleValSerGlnHisValArgIleLeuLy 217866 : GCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGATATTAAA : 217922 272 : n : 271 ! s 217923 : G : 217924 vulgar: gi|861722545|gb|AKO90015.1| 0 271 . KQ414889.1 217114 217924 + 295 M 180 540 G 1 0 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217115 217924 295 + . gene_id 1 ; sequence gi|861722545|gb|AKO90015.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 217115 217924 . + . KQ414889.1 exonerate:protein2genome:local exon 217115 217924 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 217115 217924 295 + . alignment_id 1 ; Query gi|861722545|gb|AKO90015.1| ; Align 217115 1 540 ; Align 217655 182 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722545|gb|AKO90015.1| odorant receptor 51 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 289 Query range: 21 -> 271 Target range: 226933 -> 227680 22 : AspIleGluTyrThrGlnGlnLeuLeuSerIleLeuAlaIleTrpProLeuValThrL : 41 ..!|||:!!! !.!!:: !||||||!.! !|||!.!|||||||||! ! ! !| SerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgL 226934 : AGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCA : 226991 42 : ysSerSerThrIleLysLysIleLeuSerTrpIleHisLeuLeuValIleIleGlySe : 60 |||||||| !||| !!:! !!!!||||||:!: !!!!:!! ! !!.! ysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLe 226992 : AAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCT : 227048 61 : rLeuIleTrpAsnIleLeuPheArgCysIlePheIleTyrIleTyrValLysLysPhe : 79 !:!!! !!::.!.:!::!!! !!! !!:!:!:!:!: !:!! ! |||||| ! uMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAla 227049 : GATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCT : 227105 80 : AspAspGlnIleMetLeuIleGlyProThrPhePheArgValIleIleLeuLeuLysT : 99 !!:!! !:!:! :!!|||||||||! !! !||| !!.!!!: !|||||||||| TyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuLysT 227106 : TACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGT : 227165 100 : yrLeuAlaIleIleTyrHisArgLysThrIleLysLysIlePheAsnHisIleGlnTh : 118 ||! ! !:!:! !:!|||..! ! !||| :!! ! !!.!.!..|||:!! yrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIleLysTr 227166 : ACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATG : 227222 119 : rAspArgSerGlyValGluCysGlnGluGlnGlnAsnIleMetMetArgAsnValGln : 137 !||| !!!.!..!:!!..!! !! !|||.!.::!|||:!:|||:!!! ! !!!.! ! pAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyr 227223 : GGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTAT : 227279 138 : IleAsnArgHisValThrLeuValPheAlaIlePheMetTyrSerSerGlyThrPheT : 157 !...||| ! :!!! ! !:!!! !.!!.!!|||:!:!:!|||||| ...|||: TyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheValPheP 227280 : TACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttt : 227339 158 : yrAsnPheValMetProHisIleLeuProLeuLeuThrHisArgGlySerArgAsnTh : 176 :: .!!|||:!:||| !! ! ! ! !:!!.!! ..!! !.!!!.!:!!!: heTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSe 227340 : tctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAG : 227396 177 : rSerGlnArgLeuThrIlePheProGlyTyrAsnValLeuSerAspValGlnLysSer : 195 !! ! !:!:!! !! |||||| ! !!.:!!:!!:!!||||||!:: ! ||| rTyrIleGlnMetPro---PheProPheProLysIleIleAlaAspValArgTyrSer 227397 : TTACATTCAGATGCCG---TTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGC : 227450 196 : ProIleTyrGluIleThrPhePhePheHisIlePheSerValPheAlaGlyPheSerV : 215 |||.!! !!|||||| !|||! ! !!..!! ! !!!! !.!!!.! ! !.!!| ProPheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuHisGlyV 227451 : CCTTTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTG : 227510 216 : alLeuValLeuAlaCysAsnIleAlaValValLeuValThrHisAlaCysGlyGlnIl : 234 || ! ! !||||||!:!!!:|||!.!:!!|||!.!..!|||||||||||||||!! alThrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMe 227511 : TCACGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGAT : 227567 235 : eGlnIleIleIleGlyGlnLeuAsnSerLeuIleAspAspPheThrAsnAsnGluLys : 253 ::!!:!::!::!:..! !|||... !|||||||||! ! .!!:!!! ...||| tGluValLeuValSerTrpLeuGlyHisLeuIleAspGlyArgAlaAspMetSerLys 227568 : GGAGGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGCAGAGCGGATATGAGCAAA : 227624 254 : ThrLeuTyrIleLysPheSerSerIleIleSerArgHisIleArgValIleGln : 271 |||||| !! !!:!.!!:!!||||||:!!!!!!.!|||:!!|||:!!:!::!! ThrLeuAspAspArgIleAlaSerIleValThrHisHisValArgIleLeuLys 227625 : ACACTGGATGATAGAATCGCTAGCATCGTCACTCACCACGTTCGAATATTGAAG : 227680 vulgar: gi|861722545|gb|AKO90015.1| 21 271 . KQ414889.1 226933 227680 + 289 M 160 480 G 1 0 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226934 227680 289 + . gene_id 2 ; sequence gi|861722545|gb|AKO90015.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 226934 227680 . + . KQ414889.1 exonerate:protein2genome:local exon 226934 227680 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 226934 227680 289 + . alignment_id 2 ; Query gi|861722545|gb|AKO90015.1| ; Align 226934 22 480 ; Align 227414 183 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722545|gb|AKO90015.1| odorant receptor 51 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 275 Query range: 69 -> 271 Target range: 208359 -> 208962 70 : IlePheIleTyrIleTyrValLysLysPheAspAspGlnIleMetLeuIleGlyProT : 89 !!:||| !:!! |||:!! ! ||| !!||||||:!!! !:!! !.!! !! MetPheAlaIleLeuValValGluAspPheTyrAspGlnLeuLysIleCysSerAlaL 208360 : ATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTAAAGATCTGTAGCGCTC : 208417 90 : hrPhePheArgValIleIleLeuLeuLysTyrLeuAlaIleIleTyrHisArgLysTh : 108 ! !||| !:!!!!: !!! !||||||:!! !!!:! ! !!.!..! euSerPhePheMetMetAlaPheThrLysTyrValIleMetThrValArgGluGlyAs 208418 : TGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGACTGTCCGCGAGGGTGA : 208474 109 : rIleLysLysIlePheAsnHisIleGlnThrAspArgSerGlyValGluCysGlnGlu : 127 !|||::!||| ! !!.!.:!!:!!:!!.!!||| !!!!!..!|||||| !:!!||| pIleArgLysCysValGluTyrValGluAlaAspTrpArgAsnValGluHisGluGlu 208475 : CATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAACGTGGAGCACGAGGAG : 208531 128 : GlnGlnAsnIleMetMetArgAsnValGlnIleAsnArgHisValThrLeuValPheA : 147 .!.::!!!.||||||:!! !|||!.!....!! !||| ! :!!! !:!!:!!! !! AspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLysLeuIleValIleCysG 208532 : GACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAACTGATCGTGATATGCG : 208591 148 : laIlePheMetTyrSerSerGlyThrPheTyrAsnPheValMetProHisIleLeuPr : 166 .! !|||||||||.!!.!. |||||| .!!!.!:!!|||! !! !! ! lyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaLeuProLeuThrArgAs 208592 : GAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTTTGCCGCTCACTCGAGA : 208648 167 : oLeuLeuThrHisArgGlySerArgAsnThrSerGlnArgLeuThrIlePheProGly : 185 ! !:!!..!.!...!|||.!!!.! |||! !::!|||||| :!!!:!|||! ! pLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLeu---ValTyrProVal 208649 : CAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCTG---GTTTATCCTGTT : 208702 186 : TyrAsnValLeuSerAspValGlnLysSerProIleTyrGluIleThrPhePhePheH : 205 !!!. !!:!! !||||||!:! ! ||||||:!: !!|||||| !!:! ! ! ProLysPheIleLeuAspValArgTyrSerProValAsnGluIlePheTyrThrValG 208703 : CCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATTTTTTATACGGTAC : 208762 206 : isIlePheSerValPheAlaGlyPheSerValLeuValLeuAlaCysAsnIleAlaVa : 224 !.:!:!!.|||! !|||!.!!.! !!:!:!! !||| !||||||..!:!:|||!. lnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaCysGlyLeuAlaAl 208763 : AATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTTGCGGTTTGGCCGC : 208819 225 : lValLeuValThrHisAlaCysGlyGlnIleGlnIleIleIleGlyGlnLeuAsnSer : 243 !:!!|||!.!! !|||||||||||||||:!:||||||:!:!!:..! !:!!.!.!.! aLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSerTrpMetGluLys 208820 : GCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTCCTGGATGGAGAAG : 208876 244 : LeuIleAspAspPheThrAsnAsnGluLysThrLeuTyrIleLysPheSerSerIleI : 263 |||:!!|||! !:!!.!.||||||!.!||| !! !:!!!.:!!!:!|||: LeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArgLeuAlaAsnIleV 208877 : TTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGGTTGGCTAATATCG : 208936 264 : leSerArgHisIleArgValIleGln : 271 !:..!!:!|||:!!|||||||||:!! alGluGlnHisValArgValIleLys 208937 : TGGAGCAGCATGTTCGAGTGATCAAG : 208962 vulgar: gi|861722545|gb|AKO90015.1| 69 271 . KQ414889.1 208359 208962 + 275 M 111 333 G 1 0 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208360 208962 275 + . gene_id 3 ; sequence gi|861722545|gb|AKO90015.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 208360 208962 . + . KQ414889.1 exonerate:protein2genome:local exon 208360 208962 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 208360 208962 275 + . alignment_id 3 ; Query gi|861722545|gb|AKO90015.1| ; Align 208360 70 333 ; Align 208693 182 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722545|gb|AKO90015.1| odorant receptor 51 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 274 Query range: 21 -> 272 Target range: 212875 -> 213625 22 : AspIleGluTyrThrGlnGlnLeuLeuSerIleLeuAlaIleTrpProLeuValThrL : 41 ...||| !!::!.!!:: !||||||!.! ! !!.!:!:|||||| ! !:!! SerIleProTrpAsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspLysSerT 212876 : agtatacCGTGGAATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCT : 212933 42 : ysSerSerThrIleLysLysIleLeuSerTrpIleHisLeuLeuValIleIleGlySe : 60 ! !||| !!|||:!!|||! !:!!:!! ! :!: ! ! !||| ! !|||! yrValSerProIleGluLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLe 212934 : ACGTTTCACCGATCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTT : 212990 61 : rLeuIleTrpAsnIleLeuPheArgCysIlePheIleTyrIleTyrValLysLysPhe : 79 !:!! !!:: !:!!:!! !! !!:!:!:!:!:!:!:!! !!|||:::...... uIleGlyTyrLeuValIleProCysSerLeuTyrValPheLeuAspValGluAsnIle 212991 : GATCGGTTACCTTGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatata : 213047 80 : AspAspGlnIleMetLeuIleGlyProThrPhePheArgValIleIleLeuLeuLysT : 99 :::||| |||.!!||| ! ! ||| !!||| ! |||! !|||| PheLysGluIleGluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysT 213048 : tttaaagagaTCGAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGT : 213107 100 : yrLeuAlaIleIleTyrHisArgLysThrIleLysLysIlePheAsnHisIleGlnTh : 118 ||! !:!!:!:||| !||| !! ! !|||:::! ! ! !!.!.|||!!::!! yrHisSerLeuIleLeuHisGlyAspAspIleArgThrCysValGluHisMetLysTy 213108 : ATCATTCGTTGATACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATA : 213164 119 : rAspArgSerGlyValGluCysGlnGluGlnGlnAsnIleMetMetArgAsnValGln : 137 !||| !!!.!..!:!! ! !:!!|||.!.:!!.!.|||||| ! !|||!.!... rAspTrpLysAsnIleThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSer 213165 : TGACTGGAAGAATATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGC : 213221 138 : IleAsnArgHisValThrLeuValPheAlaIlePheMetTyrSerSerGlyThrPheT : 157 .!!...!:!...:!!..! !:!!! !|||.!!|||||||||!!!.!! !||||||| PheGlyLysArgIleValThrIleCysAlaPhePheMetTyrThrGlyPheThrPheT 213222 : TTTGGAAAGAGGATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTT : 213281 158 : yrAsnPheValMetProHisIleLeuProLeuLeuThrHisArgGlySerArgAsnTh : 176 || !.!!|||:!:||| !! ! ! ! !:!!..! ..! ..!! !|||.. yrPheLeuValValProIleSerAlaAspLysMetValAlaGlu---AspLeuAsnVa 213282 : ATTTCCTCGTCGTACCGATCAGCGCGGATAAAATGGTAGCGGAG---GATCTTAACGT : 213335 177 : rSerGlnArgLeuThrIlePheProGlyTyrAsnValLeuSerAspValGlnLysSer : 195 !!!! |||! !! !:!: !!|||! !! !.. !!:!! !||||||!:! ! ||| lThrPheArgGlnMetValValProValSerArgPheIleValAspValArgTyrSer 213336 : GACATTCAGACAAATGGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGT : 213392 196 : ProIleTyrGluIleThrPhePhePheHisIlePheSerValPheAlaGlyPheSerV : 215 |||:!: !!|||||| !|||!!..!!!!.|||.!.:!!! ! ! ! ! !:!!: ProValAsnGluIlePhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaI 213393 : CCTGTGAACGAGATATTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTA : 213452 216 : alLeuValLeuAlaCysAsnIleAlaValValLeuValThrHisAlaCysGlyGlnIl : 234 !! !|||:!!||||||!:!:!:|||!.!|||!!!!.!..!|||||||||||||||!! leAlaValValAlaCysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMe 213453 : TTGCGGTGGTAGCTTGTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGAT : 213509 235 : eGlnIleIleIleGlyGlnLeuAsnSerLeuIleAspAspPheThrAsnAsnGluLys : 253 : |||:!:!!:.!! !|||.!. !|||||||||! ! !:!!! ...||| tGlyIleLeuMetSerTrpLeuGluHisLeuIleAspGlyArgGluAspMetSerLys 213510 : GGGCATTTTGATGAGCTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGCAAG : 213566 254 : ThrLeuTyrIleLysPheSerSerIleIleSerArgHisIleArgValIleGlnPhe : 272 !.!:!! !! !!:!.!!:!! !|||:!:!:!!:!|||:!:|||:!!:!::!!!:: AsnValAspAspArgIleAlaValIleValAsnGlnHisValArgIleLeuLysTrp 213567 : AATGTGGACGACAGAATCGCGGTCATCGTGAACCAGCATGTGCGGATACTGAAGTGG : 213625 vulgar: gi|861722545|gb|AKO90015.1| 21 272 . KQ414889.1 212875 213625 + 274 M 150 450 G 1 0 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212876 213625 274 + . gene_id 4 ; sequence gi|861722545|gb|AKO90015.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212876 213625 . + . KQ414889.1 exonerate:protein2genome:local exon 212876 213625 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 212876 213625 274 + . alignment_id 4 ; Query gi|861722545|gb|AKO90015.1| ; Align 212876 22 450 ; Align 213326 173 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722545|gb|AKO90015.1| odorant receptor 51 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 274 Query range: 21 -> 272 Target range: 221381 -> 222131 22 : AspIleGluTyrThrGlnGlnLeuLeuSerIleLeuAlaIleTrpProLeuValThrL : 41 ..!:!::!!! !:!!:: !:!!|||!.! :!!!.!:!!|||||| ! !.!!! SerValGlnLeuSerArgTrpIleLeuLysProIleGlyValTrpProAsnSerAlaA 221382 : AGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTTGGCCAAATTCAGCCA : 221439 42 : ysSerSerThrIleLysLysIleLeuSerTrpIleHisLeuLeuValIleIleGlySe : 60 !.! !||||||:!!:!!!:! !|||! !|||:!: !:!!||| ! !.!! snIleSerThrValGluArgTyrLeuTyrTrpLeuIleAsnValValCysTyrSerLe 221440 : ACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAACGTCGTTTGTTACAGCCT : 221496 61 : rLeuIleTrpAsnIleLeuPheArgCysIlePheIleTyrIleTyrValLysLysPhe : 79 !:!!! !:: !:!::!! ! !! !!:!!!:!:!: !:!! ! |||:!! ! !! uIleThrPheLeuLeuValProCysSerLeuTyrValIleLeuGluValGluAspVal 221497 : GATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTCGAAGTAGAAGATGTC : 221553 80 : AspAspGlnIleMetLeuIleGlyProThrPhePheArgValIleIleLeuLeuLysT : 99 !!:!!::!|||! |||:!:|||||| ! !||| !!|||!!: !!!!||||||| TyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysValMetAlaPheLeuLysT 221554 : TACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGATGGCATTTCTAAAGT : 221613 100 : yrLeuAlaIleIleTyrHisArgLysThrIleLysLysIlePheAsnHisIleGlnTh : 118 ||! ! !:!:||| !:!!..!!!. !|||::::!! !.!!.!.!.!|||:!! yrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCysIleGluArgIleGluTr 221614 : ATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTGCATCGAGCGCATCGAATG : 221670 119 : rAspArgSerGlyValGluCysGlnGluGlnGlnAsnIleMetMetArgAsnValGln : 137 !||| !!!.!..!:!! ! !...:!!.!.:!!:!!||||||!!:..!|||!.! pAspTrpLysAsnIleThrTyrSerLysAspLysAspIleMetIleGluAsnAlaIle 221671 : GGATTGGAAGAATATCACTTACTCCAAGGATAAGGATATAATGATAGAGAACGCGATT : 221727 138 : IleAsnArgHisValThrLeuValPheAlaIlePheMetTyrSerSerGlyThrPheT : 157 .!!..!|||!..:!!! !:!!:!!! !.!!.!!||||||||||||... ...|||| PheGlyArgArgLeuIleMetIleCysThrPhePheMetTyrSerGlyPheValPheT 221728 : TTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGTACAGTggtttcgtttttt : 221787 158 : yrAsnPheValMetProHisIleLeuProLeuLeuThrHisArgGlySerArgAsnTh : 176 || ...!.!!!:||| !! !:!! ! !:!! !! !:! ..! |||.. yrTyrIleAlaIleProPheSerValGlyLysIleProAlaGln---AspValAsnVa 221788 : attacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGCGCAG---GATgtgaatgt : 221841 177 : rSerGlnArgLeuThrIlePheProGlyTyrAsnValLeuSerAspValGlnLysSer : 195 .::: ! !! !:!:|||||| !! !.. !!:!! !|||..!!:! ! ||| lThrPheIleProMetValPheProPheSerArgPheIleValAspThrArgTyrSer 221842 : aacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTCGATACTCGGTACAGT : 221898 196 : ProIleTyrGluIleThrPhePhePheHisIlePheSerValPheAlaGlyPheSerV : 215 |||:!! !!|||||| !|||! .!!!!.|||.!.:!!! ! ! ! ! !|||: ProValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyAlaLeuMetHisSerI 221899 : CCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTGCTTTGATGCACAGTA : 221958 216 : alLeuValLeuAlaCysAsnIleAlaValValLeuValThrHisAlaCysGlyGlnIl : 234 !! ! ! !||||||!:!:!:!.!!.!:!!!!!!.!..!|||||||||||||||!! leThrSerAlaAlaCysSerLeuValAlaMetPheAlaValHisAlaCysGlyGlnMe 221959 : TTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCACGCTTGCGGTCAGAT : 222015 235 : eGlnIleIleIleGlyGlnLeuAsnSerLeuIleAspAspPheThrAsnAsnGluLys : 253 :|||:!::!:!!:.!! !|||!!. !||||||:!!! ! .!!:!!! !!. tGlnValLeuMetSerTrpLeuLysHisLeuIleAsnGlyArgAlaAspMetCysAsn 222016 : GCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGCCGGGCGGATATGTGTAAC : 222072 254 : ThrLeuTyrIleLysPheSerSerIleIleSerArgHisIleArgValIleGlnPhe : 272 !.!:!! !!! !:!.!.:!!!.!|||:!:!:!!:!|||:!!|||:!!:!:|||!:! AsnValAspArgArgIleAlaLysIleValAsnGlnHisValArgIleLeuGlnTyr 222073 : AACGTGGATAGGAGAATAGCGAAGATTGTGAATCAACACGTTCGAATATTGCAGTAT : 222131 vulgar: gi|861722545|gb|AKO90015.1| 21 272 . KQ414889.1 221381 222131 + 274 M 150 450 G 1 0 M 100 300 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221382 222131 274 + . gene_id 5 ; sequence gi|861722545|gb|AKO90015.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221382 222131 . + . KQ414889.1 exonerate:protein2genome:local exon 221382 222131 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 221382 222131 274 + . alignment_id 5 ; Query gi|861722545|gb|AKO90015.1| ; Align 221382 22 450 ; Align 221832 173 300 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722545|gb|AKO90015.1| odorant receptor 51 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 222 Query range: 7 -> 246 Target range: 278537 -> 279260 8 : AsnSerGlnThrLysLysLysIleAsnLeuThrValPheAspAspIleGluTyrThrG : 27 !.!|||..!||| ! ..!! ! ||| ! ! !.!. !!..!:!!:!! !.!! ThrSerSerThrAspSerThrTrpAsnThrAspTrpMetTyrSerValGlnMetAsnA 278538 : ACTTCGTCAACCGATTCGACGTGGAACACGGATTGGATGTACAGCGTACAGATGAACC : 278595 28 : lnGlnLeuLeuSerIleLeuAlaIleTrpProLeuValThrLysSerSerThrIleLy : 46 :: !!!!|||!.! :!!!.!:!!||||||||| ! ! !!!!|||:!::! rgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuCysValThrThrLeuGl 278596 : GTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCTGCGTGACCACCTTGGA : 278652 47 : sLysIleLeuSerTrpIleHisLeuLeuValIleIleGlySerLeuIleTrpAsnIle : 65 !|||||| !||| :!: !||| !:!!|||! ! !!! !|||||| ! !:!! uLysIleSerSer---ValValLeuAlaLeuIleSerCysPheLeuIleGlyPheLeu 278653 : AAAGATCAGTTCC---GTGGTCCTCGCGTTAATCAGTTGCTTCCTGATAGGTTTCCTC : 278706 66 : LeuPheArgCysIlePheIleTyrIleTyrValLys<-><->LysPheAspAspGlnI : 83 ||| ! ! !||| !.!. ! :!: !! !||| ! .!!||| :!!| LeuValProCysAlaLeuCysThrValLeuAspLysThrGlyAspLeuAspThrLysI 278707 : TTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGCGATCTCGACACGAAGA : 278766 84 : leMetLeuIleGlyProThrPhePheArgValIleIleLeuLeuLysTyrLeuAlaIl : 102 ||! :!!||||||||| ! !||| !!..!!!: ! !:!!||||||! ! !:! leLysMetIleGlyProLeuSerPheCysThrMetAlaThrIleLysTyrTyrIleLe 278767 : TCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGATCAAATATTACATTCT : 278823 103 : eIleTyrHisArgLysThrIleLysLysIlePheAsnHisIleGlnThrAspArgSer : 121 !!!:! !.! !! ! !||| ||| ! ! ||| !!|||!::|||||| !!||| uMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIleArgThrAspTrpSer 278824 : AATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACATTCGTACGGACTGGTCT : 278880 122 : <-><-><->GlyValGluCysGlnGluGlnGlnAsnIleMetMetArgAsnValGlnI : 138 ..! !... :::|||::::::...||||||! ! !!:!!.!::!| LeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMetArgAspSerAlaArgI 278881 : CTTACACTTTCGTATCGtcaagaagaggagagagagatcaTGAGGGACAGCGCTAGAA : 278940 139 : leAsnArgHisValThrLeuValPheAlaIlePheMetTyrSerSerGlyThrPheTy : 157 ||...||| !:!!.!!:!! !! !||| !||||||||||||.!!|||..!||||| leGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrSerGlyGlyValPheTy 278941 : TTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATTCCGGCGGAGTTTTCTA : 278997 158 : rAsnPheValMetProHisIleLeuProLeuLeuThrHisArgGlySerArgAsnThr : 176 |!.! !||||||||| ||| ! !:!! ! ..! !! ! !||| ! rThrAlaValMetPro------LeuPheAlaValArgThrGluIleIleAspAsnGlu 278998 : CACCGCCGTGATGCCG------TTGTTCGCAGTACGCACGGAGATCATCGACAATGAA : 279048 177 : SerGlnArgLeuThrIlePheProGlyTyrAsnValLeuSerAspValGlnLysSerP : 196 !!! !|||! ! ! |||||| !|||..!! !||| !||| !!::! |||| ThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspProArgThrSerP 279049 : ACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCGCGTACCAGCC : 279108 197 : roIleTyrGluIleThrPhePhePheHisIlePheSerValPheAlaGlyPheSerVa : 215 || !:!||||||..! |||.!.!!. !!!.:!!!.!|||!.! !!:!||||| roSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValLeuTyrSerVa 279109 : CGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTTTATACTCGGT : 279165 216 : lLeuValLeuAlaCysAsnIleAlaValValLeuValThrHisAlaCysGlyGlnIle : 234 | !||| !||||||!:!:!: !!.!|||!!!|||! !|||!.!|||||||||.!! lThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCysGlyGlnPhe 279166 : CACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTGTGGGCAATTC : 279222 235 : GlnIleIleIleGlyGlnLeuAsnSerLeuIleAsp : 246 ::!|||:!!:!: !:!!|||:!!!.!||||||||| ArgIleLeuValThrLysLeuAspLysLeuIleAsp 279223 : AGGATACTTGTGACAAAGCTGGATAAGCTCATCGAC : 279260 vulgar: gi|861722545|gb|AKO90015.1| 7 246 . KQ414889.1 278537 279260 + 222 M 43 129 G 1 0 M 26 78 G 0 6 M 44 132 G 0 9 M 41 123 G 2 0 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278538 279260 222 + . gene_id 6 ; sequence gi|861722545|gb|AKO90015.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 278538 279260 . + . KQ414889.1 exonerate:protein2genome:local exon 278538 279260 . + . insertions 15 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 278538 279260 222 + . alignment_id 6 ; Query gi|861722545|gb|AKO90015.1| ; Align 278538 8 129 ; Align 278667 52 78 ; Align 278751 78 132 ; Align 278892 122 123 ; Align 279015 165 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722545|gb|AKO90015.1| odorant receptor 51 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 219 Query range: 115 -> 246 Target range: 304413 -> 304800 116 : IleGlnThrAspArgSerGlyValGluCysGlnGluGlnGlnAsnIleMetMetArgA : 135 :!!...|||! !..! !||||||! !! ..!.!.!::.!.!!:|||:!:!:! LeuSerThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuLysT 304414 : CTCTCTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAAAAT : 304471 136 : snValGlnIleAsnArgHisValThrLeuValPheAlaIlePheMetTyrSerSerGl : 154 !!! !|||!!:..!|||:!!:!!|||:!!:!!! !|||||||||||||||!!!.!!|| yrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGlyGl 304472 : ACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGGCGG : 304528 155 : yThrPheTyrAsnPheValMetProHisIleLeuProLeuLeuThrHisArgGlySer : 173 ||||.!!|||:!! ||||||! ! ! ! ! |||:!! !! !..! yThrIleTyrHisThrValMetGlnPheAlaThrGly------ThrTyrValAspGlu 304529 : CACCATTTATCACACGGTCATGCAGTTCGCGACCGGA------ACGTATGTGGATGAG : 304579 174 : ArgAsnThrSerGlnArgLeuThrIlePheProGlyTyrAsnValLeuSerAspValG : 193 !||| !!!! !:!! ! !:!!!:!||| !|||!:!!.!|||! !||||||| TyrAsnArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValG 304580 : TATAATCGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTC : 304639 194 : lnLysSerProIleTyrGluIleThrPhePhePheHisIlePheSerValPheAlaGl : 212 ||! !|||||||||||||||:!:..!!:!||| !!||| !.!.!!!! !!:!!.! lnThrSerProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIl 304640 : AAACAAGCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAAT : 304696 213 : yPheSerValLeuValLeuAlaCysAsnIleAlaValValLeuValThrHisAlaCys : 231 !!:!|||:!! !!.! !||||||...:!!|||!.!:!!!!!!.!|||||||||||| eTyrSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCys 304697 : TTATTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGT : 304753 232 : GlyGlnIleGlnIleIleIleGlyGlnLeuAsnSerLeuIleAsp : 246 |||||||||.!.|||:!!!!:..!!:!|||..!..!|||:!!:!! GlyGlnIleAspIleValMetSerArgLeuGlyAspLeuValAsn 304754 : GGACAAATTGATATCGTTATGTCTCGATTGGGTGATCTTGTCAAC : 304800 vulgar: gi|861722545|gb|AKO90015.1| 115 246 . KQ414889.1 304413 304800 + 219 M 51 153 G 2 0 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304414 304800 219 + . gene_id 7 ; sequence gi|861722545|gb|AKO90015.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 304414 304800 . + . KQ414889.1 exonerate:protein2genome:local exon 304414 304800 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 304414 304800 219 + . alignment_id 7 ; Query gi|861722545|gb|AKO90015.1| ; Align 304414 116 153 ; Align 304567 169 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722545|gb|AKO90015.1| odorant receptor 51 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 217 Query range: 21 -> 272 Target range: 232462 -> 233212 22 : AspIleGluTyrThrGlnGlnLeuLeuSerIleLeuAlaIleTrpProLeuValThrL : 41 ..!|||:!! !.!!:: !!!!|||!!! :!!!.! !||||||! !||||||: SerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgValThrG 232463 : AGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTGTTACAG : 232520 42 : ysSerSerThrIleLysLysIleLeuSerTrpIleHisLeuLeuValIleIleGlySe : 60 !!!!!|||! ! !:!!:!!:!!|||:!! :!: !|||..! ! !..! luThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHisSerLe 232521 : AGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCATTCTCT : 232577 61 : rLeuIleTrpAsnIleLeuPheArgCysIlePheIleTyrIleTyrValLysLysPhe : 79 !:!!|||! :::|||:!! !! !:!:|||||| .!! ! ! !! !!...!. uMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThrSerLeu 232578 : GATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACGAGCCTA : 232634 80 : AspAspGlnIleMetLeuIleGlyProThrPhePheArgValIleIleLeuLeuLysT : 99 !!:!!:::!!!:! !! !|||||||||! ! ! ! !:!!!!: ! !|||!!.| GluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluLeuAsnT 232635 : GAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAATTGAATT : 232694 100 : yrLeuAlaIleIleTyrHisArgLysThrIleLysLysIlePheAsnHisIleGlnTh : 118 ||! !..!:!::!: ! !!!. !||| ! ! ! .!.!!.:!::!! yrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnValLysGl 232695 : ATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGTGAAACA : 232751 119 : rAspArgSerGlyValGluCysGlnGluGlnGlnAsnIleMetMetArgAsnValGln : 137 !||| !! !!..!|||:!! ! ! !!.!:::!!:!:|||:!!!:!|||!.!:!! nAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsnAlaLys 232752 : GGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAACGCGAAA : 232808 138 : IleAsnArgHisValThrLeuValPheAlaIlePheMetTyrSerSerGlyThrPheT : 157 :!!...||| :!!.!!! !:!! !|||.!!! !|||:!! !!!|||..! !! LeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHis---ThrGlyValGlyS 232809 : CTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCAC---ACCGGTGTCGGCT : 232865 158 : yrAsnPheValMetProHisIleLeuProLeuLeuThrHisArgGlySerArgAsnTh : 176 !:!! :!!:!: !! :!!! ! ! ! ! !:!! !|||!:!..!!:! erAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGluSerTy 232866 : CCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAGAGTTA : 232922 177 : rSerGlnArgLeuThrIlePheProGlyTyrAsnValLeuSerAspValGlnLysSer : 195 !|||..! !! ! ! !! ! !! !|||!.. !|||! !|||..!::! ||| rSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArgPheSer 232923 : CTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGATTCAGT : 232979 196 : ProIleTyrGluIleThrPhePhePheHisIlePheSerValPheAlaGlyPheSerV : 215 |||! !!||||||! !||| !!.!.!!. !.!!|||! !||| !! ! !|||| ProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValAsnSerV 232980 : CCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGAACTCCG : 233039 216 : alLeuValLeuAlaCysAsnIleAlaValValLeuValThrHisAlaCysGlyGlnIl : 234 || !||| !||||||..!:!!!.!!.!||||||!.!! !|||||||||||||||:! alThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGlyGlnLe 233040 : TTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGGACAGCT : 233096 235 : eGlnIleIleIleGlyGlnLeuAsnSerLeuIleAspAspPheThrAsnAsnGluLys : 253 :.!.:!::!:!!:..!:!!|||:!!..!|||:!:|||! !.!..!.|||!:! uAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGlyGlnGluGluArg 233097 : GAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAGGAGGAGAGA : 233153 254 : ThrLeuTyrIleLysPheSerSerIleIleSerArgHisIleArgValIleGlnPhe : 272 ..! ! ! ! |||!!..!!! !|||:!:..!!.!|||:!:|||..!:!!::!!:! ValAlaGlnArgLysLeuGlyPheIleValGluHisHisLeuArgThrLeuArgTyr 233154 : GTCGCGCAGAGGAAGTTAGGTTTCATCGTGGAGCATCATTTGCGTACATTAAGGTAT : 233212 vulgar: gi|861722545|gb|AKO90015.1| 21 272 . KQ414889.1 232462 233212 + 217 M 130 390 G 1 0 M 120 360 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232463 233212 217 + . gene_id 8 ; sequence gi|861722545|gb|AKO90015.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 232463 233212 . + . KQ414889.1 exonerate:protein2genome:local exon 232463 233212 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 232463 233212 217 + . alignment_id 8 ; Query gi|861722545|gb|AKO90015.1| ; Align 232463 22 390 ; Align 232853 153 360 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722545|gb|AKO90015.1| odorant receptor 51 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 210 Query range: 21 -> 246 Target range: 284526 -> 285207 22 : AspIleGluTyrThrGlnGlnLeuLeuSerIleLeuAlaIleTrpProLeuValThrL : 41 ..!:!!:!! !.!!:: !!!!|||!.! :!!!.!:!!||||||||| ! ! SerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerLeuC 284527 : AGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTCTCT : 284584 42 : ysSerSerThrIleLysLysIleLeuSerTrpIleHisLeuLeuValIleIleGlySe : 60 !!!!|||:!::!!|||||| !||| :!: !||| !:!!|||! ! !!! ysValThrThrLeuGluLysIleSerSer---ValValLeuAlaLeuIleSerCysPh 284585 : GCGTGACCACCTTGGAAAAGATCAGTTCC---GTGGTCCTCGCGTTAATCAGTTGTTT : 284638 61 : rLeuIleTrpAsnIleLeuPheArgCysIlePheIleTyrIleTyrValLys<-><-> : 78 !|||||| ! !:!!||| ! ! !||| !.!. ! :!: !! !||| eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 79 : LysPheAspAspGlnIleMetLeuIleGlyProThrPhePheArgValIleIleLeuL : 97 ! .!!||| :!!|||! :!!||||||||| ! !||| !!:!!!!: ! !: AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 98 : euLysTyrLeuAlaIleIleTyrHisArgLysThrIleLysLysIlePheAsnHisIl : 116 !!||||||! ! !:!!|||! !.! !! ! !||| :!! ! ! !!. !!|| leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 117 : eGlnThrAspArgSer<-><-><->GlyValGluCysGlnGluGlnGlnAsnIleMet : 132 |!::.!!||| !!||| ..! !... :::|||::::::...|||||| eArgAlaAspTrpSerLeuThrLeuSerHisSerGlnGluGluGluArgGluIleMet 284813 : TCGTGCGGACTGGTCTCTCACGCTTTCGCATAGtcaagaagaggagagagagatcaTG : 284869 133 : MetArgAsnValGlnIleAsnArgHisValThrLeuValPheAlaIlePheMetTyrS : 152 ! ! !!:!!.!::!|||...||| !:!!.!!:!! !!! !||| !|||||||||| ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheCysAlaGlyPheMetTyrS 284870 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCTGCGCCGGTTTCATGTATT : 284929 153 : erSerGlyThrPheTyrAsnPheValMetProHisIleLeuProLeuLeuThrHisAr : 171 ||.!!||| !||||||!.! ||||||||| ||| ! !:!! ! .. erGlyGlyPhePheTyrThrThrValMetPro------LeuCysThrValArgThrGl 284930 : CCGGAGGATTTTTCTACACCACGGTGATGCCG------TTGTGCACAGTACGCACGGA : 284980 172 : gGlySerArgAsnThrSerGlnArgLeuThrIlePheProGlyTyrAsnValLeuSer : 190 ! !! ! !||| !!!! !|||! ! ! |||||| !|||..!! !||| ! uIleIleAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeu 284981 : GATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTTCTC : 285037 191 : AspValGlnLysSerProIleTyrGluIleThrPhePhePheHisIlePheSerValP : 210 ||| !!::! |||||| !:!||||||..! |||.!.!!. !!!.:!!!.!| AspProArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaP 285038 : GATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGT : 285097 211 : heAlaGlyPheSerValLeuValLeuAlaCysAsnIleAlaValValLeuValThrHi : 229 ||!.! !!:!|||||| !||| !||||||!:!:!:|||!.!|||!!!|||! !|| heValIleTyrSerValThrValGlyAlaCysSerLeuAlaAlaValPheValMetHi 285098 : TCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGCTGCTGTGTTCGTCATGCA : 285154 230 : sAlaCysGlyGlnIleGlnIleIleIleGlyGlnLeuAsnSerLeuIleAsp : 246 |!.!|||||||||.!!::!|||:!!:!: !:!!|||:!!!.!|||:!!||| sValCysGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuValAsp 285155 : CGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGATAAGCTCGTCGAC : 285207 vulgar: gi|861722545|gb|AKO90015.1| 21 246 . KQ414889.1 284526 285207 + 210 M 29 87 G 1 0 M 26 78 G 0 6 M 44 132 G 0 9 M 41 123 G 2 0 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284527 285207 210 + . gene_id 9 ; sequence gi|861722545|gb|AKO90015.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 284527 285207 . + . KQ414889.1 exonerate:protein2genome:local exon 284527 285207 . + . insertions 15 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 284527 285207 210 + . alignment_id 9 ; Query gi|861722545|gb|AKO90015.1| ; Align 284527 22 87 ; Align 284614 52 78 ; Align 284698 78 132 ; Align 284839 122 123 ; Align 284962 165 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722545|gb|AKO90015.1| odorant receptor 51 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 207 Query range: 21 -> 271 Target range: 262852 -> 263602 22 : AspIleGluTyrThrGlnGlnLeuLeuSerIleLeuAlaIleTrpProLeuValThrL : 41 ..!:!::!! !.!!:! !||||||!.! :!!!.! !||||||||| !.!!. SerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProLeuSerAlaS 262853 : AGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCACTGTCCGCCT : 262910 42 : ysSerSerThrIleLysLysIleLeuSerTrpIleHisLeuLeuValIleIleGlySe : 60 .!! !|||! !!!::!!::!|||:!!!!!!:::!! :!!:!!||| ! ! !! erIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCysTyrCysLe 262911 : CGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTGTTACTGTCT : 262967 61 : rLeuIleTrpAsnIleLeuPheArgCysIlePheIleTyrIleTyrValLysLysPhe : 79 !:!!:!!! !.!:!!:!! ! ! :!! !||| !:!! ! !.!:!!!!.||| uIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAlaGluAsnPhe 262968 : CATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCCGAGAATTTC : 263024 80 : AspAspGlnIleMetLeuIleGlyProThrPhePheArgValIleIleLeuLeuLysT : 99 !! :!!:!:..!:!!:!!|||||| ! ! !! !!:!! !:!!:!!!!.| HisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyMetIleAsnT 263025 : CATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTATGATCAATT : 263084 100 : yrLeuAlaIleIleTyrHisArgLysThrIleLysLysIlePheAsnHisIleGlnTh : 118 || ! !:!::!: !|||!!!||| !|||:!! ! ! .!.|||:!:||| yrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHisValGlnGl 263085 : ACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACACGTGCAGGA : 263141 119 : rAspArgSerGlyValGluCysGlnGluGlnGlnAsnIleMetMetArgAsnValGln : 137 !||| !!!!! !||| ! !|||.!.|||..!||||||:!!!:!|||!.!:!! uAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLysAsnAlaLys 263142 : AGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAGAACGCGAAA : 263198 138 : IleAsnArgHisValThrLeuValPheAlaIlePheMetTyrSerSerGlyThrPheT : 157 !..!|||:!!|||.!! ! !! !|||||||||||| ! !!!||| ! !.!.! TyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSer---IleMetC 263199 : TACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGC---ATCATGT : 263255 158 : yrAsnPheValMetProHisIleLeuProLeuLeuThrHisArgGlySerArgAsnTh : 176 !!!.! !:!!:!: !! .!! ! !!! !:!!! !.!. !|||!:!..!!.!! ysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGluThrAr 263256 : GCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGAGACTAG : 263312 177 : rSerGlnArgLeuThrIlePheProGlyTyrAsnValLeuSerAspValGlnLysSer : 195 !! !! !|||:!! ! ! !|||! !|||!!.! !:!!! ! |||.!.! !!:! gIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAspThrAsn 263313 : AATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGACACGAAT : 263369 196 : ProIleTyrGluIleThrPhePhePheHisIlePheSerValPheAlaGlyPheSerV : 215 |||! !!|||||| !.!! ! !!..!!.!.|||! !||| !! ! !:!!. ProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValThrAlaT 263370 : CCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCACCGCGA : 263429 216 : alLeuValLeuAlaCysAsnIleAlaValValLeuValThrHisAlaCysGlyGlnIl : 234 .! !||| !|||! !..!!!:.!!!.!|||!!!!.! !|||||||||||||||:! hrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGlyGlnLe 263430 : CAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGGACAGTT : 263486 235 : eGlnIleIleIleGlyGlnLeuAsnSerLeuIleAspAspPheThrAsnAsnGluLys : 253 :.!.:!::!:!!:..! !:!!!....!!!!:!::!!.!.! !! !:!!.!..!.||| uAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGluAsnLys 263487 : GAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAGAATAAG : 263543 254 : ThrLeuTyrIle<->LysPheSerSerIleIleSerArgHisIleArgValIleGln : 271 !.!||||||.!! :!!.!..!! !|||:!!..!!.!|||:!:||||||:!:::! AsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValLeuArg 263544 : AATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTCTGAGG : 263602 vulgar: gi|861722545|gb|AKO90015.1| 21 271 . KQ414889.1 262852 263602 + 207 M 132 396 G 1 0 M 103 309 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262853 263602 207 + . gene_id 10 ; sequence gi|861722545|gb|AKO90015.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262853 263602 . + . KQ414889.1 exonerate:protein2genome:local exon 262853 263602 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 262853 263602 207 + . alignment_id 10 ; Query gi|861722545|gb|AKO90015.1| ; Align 262853 22 396 ; Align 263249 155 309 ; Align 263561 258 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722545|gb|AKO90015.1| odorant receptor 51 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 206 Query range: 85 -> 271 Target range: 289933 -> 290482 86 : IleGlyProThrPhePheArgValIleIleLeuLeuLysTyrLeuAlaIleIleTyrH : 105 :!!|||||| ! ||| !!:!!! !! !!!!!!||||||! ! !.!!! ! LeuGlyProLeuThrPheCysLeuThrThrPhePheLysTyrCysTyrPheSerMetL 289934 : CTCGGACCGTTGACGTTCTGTTTGACCACGTTCTTCAAGTATTGCTACTTCAGCATGA : 289991 106 : isArgLysThrIleLysLysIlePheAsnHisIleGlnThrAspArgSerGlyValGl : 124 ! !!..!.!!||| ::: ! ! !!.||||||:!!! !||| !!!.! !:!!.. ysGlySerAlaIleGlyArgCysValLysHisIleGluArgAspTrpLysMetLeuAr 289992 : AAGGTTCAGCGATCGGTCGTTGCGTGAAACACATCGAGAGAGACTGGAAGATGTTGCG : 290048 125 : uCysGlnGluGlnGlnAsnIleMetMetArgAsnValGlnIleAsnArgHisValThr : 143 . !:!!!!:!!.!:: !||||||:!:||| !!||| !!!:!:!|||:!!:!!! ! gAspGluAspHisArgValIleMetLeuArgTyrValThrMetSerArgAsnLeuIle 290049 : TGACGAGGATCATCGTGTTATCATGCTCAGATACGTGACGATGAGCCGGAATCTCATA : 290105 144 : LeuValPheAlaIlePheMetTyrSerSerGlyThrPheTyrAsnPheValMetProH : 163 !:!!! !|||||||||:!!|||! !.!!||| !! !|||||| !|||!!:||| LysLeuCysAlaIlePheLeuTyrIleGlyGlyLeuSerTyrAsnThrValIlePro- 290106 : AAACTGTGCGCGATCTTCTTGTACATAGGTGGTCTGTCTTATAACACTGTCATACCG- : 290165 164 : isIleLeuProLeuLeuThrHisArgGlySerArgAsnThrSerGlnArgLeuThrIl : 182 :!:!!! !! ! !!:! !.!||| |||..!!!! |||! ! !! --LeuPheSerLysLysSerValAsnGly------AsnValThrIleArgProLeuTh 290166 : --TTGTTCTCGAAGAAGAGCGTGAACGGT------AACGTGACTATCAGACCTCTAAC : 290213 183 : ePheProGlyTyrAsnValLeuSerAspValGlnLysSerProIleTyrGluIleThr : 201 !!:!|||||||||.!.! !!!!! !|||||||||||||||||| |||||||||..! rTyrProGlyTyrGluGluPhePheAspValGlnLysSerProAlaTyrGluIleVal 290214 : TTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAGAGTCCAGCGTACGAGATCGTC : 290270 202 : PhePhePheHisIlePheSerValPheAlaGlyPheSerValLeuValLeuAlaCysA : 221 |||! !.!.||| ! !!! !|||.!. ! ! !:!:!! !:!! !|||! !! PheCysMetHisCysValTyrValMetIleThrAlaAsnIleThrMetAlaAlaTyrS 290271 : TTCTGTATGCACTGTGTCTACGTCATGATCACGGCGAACATCACAATGGCGGCGTACA : 290330 222 : snIleAlaValValLeuValThrHisAlaCysGlyGlnIleGlnIleIleIleGlyGl : 240 :!:!:.!!..!:!!!!!!.!||||||.!!||||||||||||:!!||| !! !!: erLeuThrThrIlePheAlaThrHisThrCysGlyGlnIleLysIleGlnThrThrAr 290331 : GTTTGACGACGATCTTCGCCACTCATACTTGCGGTCAGATTAAGATACAAACGACGCG : 290387 241 : nLeuAsnSerLeuIleAspAspPheThrAsnAsnGluLysThrLeuTyrIleLysPhe : 259 !|||.!...!|||! ! ! ! ! |||||| !:!! ! !:::!!. gLeuGluAspLeuThrLysArgGlyMetLeuLeuGluLysGlyValSerAspArgLeu 290388 : GCTGGAGGATCTGACAAAGAGAGGGATGCTGTTGGAGAAGGGAGTGAGTGATCGTTTG : 290444 260 : SerSerIleIleSerArgHisIleArgValIleGln : 271 :!! !:!!:!:||| !!|||:!:..!:!!:!::!! AlaValValValSerGlyHisValGluIleLeuLys 290445 : GCGGTTGTTGTGAGCGGTCACGTGGAGATCTTGAAG : 290482 vulgar: gi|861722545|gb|AKO90015.1| 85 271 . KQ414889.1 289933 290482 + 206 M 77 231 G 1 0 M 9 27 G 2 0 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289934 290482 206 + . gene_id 11 ; sequence gi|861722545|gb|AKO90015.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289934 290482 . + . KQ414889.1 exonerate:protein2genome:local exon 289934 290482 . + . insertions 0 ; deletions 3 KQ414889.1 exonerate:protein2genome:local similarity 289934 290482 206 + . alignment_id 11 ; Query gi|861722545|gb|AKO90015.1| ; Align 289934 86 231 ; Align 290165 164 27 ; Align 290192 175 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722545|gb|AKO90015.1| odorant receptor 51 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 186 Query range: 21 -> 271 Target range: 266640 -> 267390 22 : AspIleGluTyrThrGlnGlnLeuLeuSerIleLeuAlaIleTrpProLeuValThrL : 41 ..!:!::!!! !.!!:! !!!!|||!.! !:!!!.! !||||||! !:!!:!! SerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProProLeuSerL 266641 : AGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGCCGTTGTCAC : 266698 42 : ysSerSerThrIleLysLysIleLeuSerTrpIleHisLeuLeuValIleIleGlySe : 60 !!!|||! !:!!:!!::!|||:!!|||!:: ! :!!:!!:!! ! ! !!|| euThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCysTyrCysSe 266699 : TCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTGCTACTGCTC : 266755 61 : rLeuIleTrpAsnIleLeuPheArgCysIlePheIleTyrIleTyrValLysLysPhe : 79 |:!!:!:!::!.!:!!:!! ! !!! .!! !:!! !:!: ! ! !:!!!...!! rIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAspGluSerIle 266756 : CATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGACGAGAGTATC : 266812 80 : AspAspGlnIleMetLeuIleGlyProThrPhePheArgValIleIleLeuLeuLysT : 99 ! :!!:!:! !:!!.!!|||||| ! ! ! !! !!:!! ! !:!!!!.| ArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyGlyIleAsnT 266813 : CGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAGGAATTAACT : 266872 100 : yrLeuAlaIleIleTyrHisArgLysThrIleLysLysIlePheAsnHisIleGlnTh : 118 || !.!!:!::!: !.!!!!||| !|||::: ! ! .!.|||!!:||||| yrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHisMetGlnTh 266873 : ACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCACATGCAAAC : 266929 119 : rAspArgSerGlyValGluCysGlnGluGlnGlnAsnIleMetMetArgAsnValGln : 137 |||| !!!!! !||| ! ! !|||.!.:!!.!.:!:|||:!!!:!|||!.!::! rAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLysAsnAlaArg 266930 : AGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAGAACGCGAGG : 266986 138 : IleAsnArgHisValThrLeuValPheAlaIlePheMetTyrSerSerGlyThrPheT : 157 |||..!|||:!!:!!.!!:!! !!! !||| |||||| ..!!!!|||..!.!! IleGlyArgTyrIleAlaIlePheCysAlaAlaPheMet---GlnCysGlyValLeuG 266987 : ATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATG---CAATGCGGTGTTCTCG : 267043 158 : yrAsnPheValMetProHisIleLeuProLeuLeuThrHisArgGlySerArgAsnTh : 176 ! !!! !|||!!: !! .!! ! !! ! !..!.!. !|||!:!..!!.!! lyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGluThrAr 267044 : GCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGAGACTAG : 267100 177 : rSerGlnArgLeuThrIlePheProGlyTyrAsnValLeuSerAspValGlnLysSer : 195 !! ! !!.!||| ! !! ! !!! !|||!!. !:!!! !! |||.!.! ||| gIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAspThrSer 267101 : GATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGATACCAGC : 267157 196 : ProIleTyrGluIleThrPhePhePheHisIlePheSerValPheAlaGlyPheSerV : 215 |||! !!||||||..!.!! !!! !!..!! ! |||! !||| !! ! !||| ProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValAsnSerS 267158 : CCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGAATTCGA : 267217 216 : alLeuValLeuAlaCysAsnIleAlaValValLeuValThrHisAlaCysGlyGlnIl : 234 !:!!||| !|||! !!:!:!!|||!.!|||!!!!.!.!!|||||||||||||||:! erValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGlyGlnLe 267218 : GCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGGACAGCT : 267274 235 : eGlnIleIleIleGlyGlnLeuAsnSerLeuIleAsp<->AspPheThrAsnAsnGlu : 252 :...:!::!:!!: ! !:!!!!...!!!!:!::!! ..! !!:!|||:!! uSerValLeuMetMetTrpIleLysGluPheValAsnArgSerArgAspSerAsnLys 267275 : GAGCGTGCTGATGATGTGGATCAAGGAGTTTGTGAACCGATCCAGAGATAGCAATAAG : 267331 253 : LysThrLeuTyrIleLysPheSerSerIleIleSerArgHisIleArgValIleGln : 271 !!...!! !!:! !|||.!!.!! !:!!:!!..!!.!|||:!:||||||:!:::! AsnValCysPheAspLysIleGlyValValValGluHisHisLeuArgValLeuArg 267332 : AACGTTTGCTTCGATAAGATTGGCGTGGTCGTTGAACATCATCTGAGAGTTTTGAGG : 267390 vulgar: gi|861722545|gb|AKO90015.1| 21 271 . KQ414889.1 266640 267390 + 186 M 129 387 G 1 0 M 95 285 G 0 3 M 25 75 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266641 267390 186 + . gene_id 12 ; sequence gi|861722545|gb|AKO90015.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266641 267390 . + . KQ414889.1 exonerate:protein2genome:local exon 266641 267390 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 266641 267390 186 + . alignment_id 12 ; Query gi|861722545|gb|AKO90015.1| ; Align 266641 22 387 ; Align 267028 152 285 ; Align 267316 247 75 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722545|gb|AKO90015.1| odorant receptor 51 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 21 -> 266 Target range: 259775 -> 260507 22 : AspIleGluTyrThrGlnGlnLeuLeuSerIleLeuAlaIleTrpProLeuValThrL : 41 ..!:!!:!!!:!!.!!:! !!!!|||!.! :!!!.! !||||||! ! !:!!. SerLeuGlnPheAsnArgTrpPheLeuLysProIleGlyAlaTrpProProSerSerS 259776 : AGCCTCCAATTTAATCGATGGTTCCTGAAACCGATAGGCGCTTGGCCACCTTCATCCT : 259833 42 : ysSerSerThrIleLysLysIleLeuSerTrpIleHisLeuLeuValIleIleGlySe : 60 ..!!!!!!! !:!!:!!||||||:!!||| |||! :!!!!!:!! ! !.!!!! erThrThrArgLeuGluLysIleIleSerValIleLeuIlePheIleCysTyrSerTh 259834 : CCACGACCAGACTCGAGAAGATCATCTCTGTTATCCTGATCTTTATCTGCTACAGTAC : 259890 61 : rLeuIleTrpAsnIleLeuPheArgCysIlePheIleTyrIleTyrValLysLysPhe : 79 !:!!:!: !.!:!::!! !! :!! !!!: :!! ! !:!!!..!!. rIleLeuValThrLeuIleProCysValLeuHisMetLeuLeuGluLysGluSerLeu 259891 : CATACTGGTCACCCTGATCCCGTGCGTACTTCACATGCTACTCGAGAAGGAGAGTTTG : 259947 80 : AspAspGlnIleMetLeuIleGlyProThrPhePheArgValIleIleLeuLeuLysT : 99 !! :!!! ! !:!!:!!|||||| ! ! ! !! !!:!! !! !:!!!!.| TyrMetLysThrLysValLeuGlyProLeuThrHisTrpPheValGlyCysIleAsnT 259948 : TACATGAAAACGAAGGTGCTCGGTCCTCTTACCCACTGGTTCGTCGGCTGTATTAATT : 260007 100 : yrLeuAlaIleIleTyrHisArgLysThrIleLysLysIlePheAsnHisIleGlnTh : 118 || !.!!:!::!:! ... !!!:! !||| !.. ! ! .!.|||:!::!!!. yrThrThrLeuLeuLeuArgGlyArgAspIleLeuSerCysValGluHisValGluAs 260008 : ACACAACGTTGTTGTTGAGAGGCAGAGACATACTTAGCTGCGTGGAACACGTGGAGAA : 260064 119 : rAspArgSerGlyValGluCysGlnGluGlnGlnAsnIleMetMetArgAsnValGln : 137 !||| !!!!! !:!! ! ! :!!:!!.!.||||||:!:|||:!!||| !!!.!:!! nAspTrpArgIleIleThrArgGluLysAspGlnAsnValMetLeuArgTyrAlaLys 260065 : CGATTGGAGAATTATAACGAGGGAGAAGGATCAGAACGTGATGTTGAGATACGCGAAA : 260121 138 : IleAsnArgHisValThrLeuValPheAlaIlePheMetTyrSerSerGlyThrPheT : 157 .!!..!|||:!!|||.!! ! !! !||| !|||:!! ..!.!!|||..!.!.! PheGlyArgTyrValAlaAlaSerCysAlaAlaPheVal---GlnGlyGlyValLeuC 260122 : TTCGGCAGATACGTCGCTGCCTCTTGCGCGGCTTTCGTG---CAGGGCGGAGTTCTGT : 260178 158 : yrAsnPheValMetProHisIleLeuProLeuLeuThrHisArgGlySerArgAsnTh : 176 ! !! !:!!:!: !! :!: ! !! !:!!! !!!. !|||!:!..!!..! ysPheCysLeuValThrValLeuSerThrGluValIleGlnValGlyAsnGluThrAr 260179 : GCTTCTGTTTGGTCACGGTGTTGAGTACAGAGGTGATACAAGTGGGAAACGAGACGAG : 260235 177 : rSerGlnArgLeuThrIlePheProGlyTyrAsnValLeuSerAspValGlnLysSer : 195 !! ! !.!||| ! ! ! !!! !|||!!.! !|||! !:!!|||.!. ! ||| gIleValHisLeuLeuProCysAlaValTyrLysGluLeuIleAsnValAsnAspSer 260236 : GATCGTTCATCTGTTGCCGTGCGCGGTGTACAAAGAGCTGATAAACGTGAACGACAGT : 260292 196 : ProIleTyrGluIleThrPhePhePheHisIlePheSerValPheAlaGlyPheSerV : 215 |||!!: !!||||||..!.!! !! ! !!..!! !!|||! !||| !! ! !||| ProMetAsnGluIleValLeuValValGlnPheValSerGlyPheIleValAsnSerS 260293 : CCTATGAACGAGATTGTTCTCGTCGTGCAATTCGTCTCGGGATTCATAGTGAATTCGA : 260352 216 : alLeuValLeuAlaCysAsnIleAlaValValLeuValThrHisAlaCysGlyGlnIl : 234 ! !||| ! !! !!:!:!!|||!.!||||||..!.!!|||||||||||||||:! erThrValGlyIlePheSerLeuAlaAlaValLeuThrAlaHisAlaCysGlyGlnLe 260353 : GCACCGTTGGAATCTTCAGTCTCGCGGCTGTTCTGACCGCTCACGCGTGCGGCCAGTT : 260409 235 : eGlnIleIleIleGlyGlnLeuAsnSerLeuIleAspAspPheThrAsnAsnGluLys : 253 :.!.:!::!!!!:! ! !:!!!....!!!!:!:|||!!:! ! !|||!..:!!||| uAsnValLeuMetGluTrpIleThrGluPheValAspGluSerArgAsnArgLysLys 260410 : GAACGTGCTCATGGAATGGATCACGGAGTTTGTGGACGAGTCGAGGAACAGGAAGAAA : 260466 254 : ThrLeuTyrIleLysPheSerSerIleIleSerArgHis : 266 ! ! ! !.!!||| ! !.!!:!:||| !..!||| LysAlaProPheLysGluIleGlyValIleValGluHis 260467 : AAGGCTCCTTTCAAGGAGATCGGAGTGATTGTCGAACAT : 260507 vulgar: gi|861722545|gb|AKO90015.1| 21 266 . KQ414889.1 259775 260507 + 177 M 129 387 G 1 0 M 115 345 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259776 260507 177 + . gene_id 13 ; sequence gi|861722545|gb|AKO90015.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 259776 260507 . + . KQ414889.1 exonerate:protein2genome:local exon 259776 260507 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 259776 260507 177 + . alignment_id 13 ; Query gi|861722545|gb|AKO90015.1| ; Align 259776 22 387 ; Align 260163 152 345 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722545|gb|AKO90015.1| odorant receptor 51 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 163 Query range: 173 -> 246 Target range: 300186 -> 300405 174 : ArgAsnThrSerGlnArgLeuThrIlePheProGlyTyrAsnValLeuSerAspValG : 193 ..!||| !!!! ! !:!! ! ! !!:!|||||||||:!! !!!!! !|||..!| GluAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleAspThrG 300187 : GAGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCGATACAC : 300244 194 : lnLysSerProIleTyrGluIleThrPhePhePheHisIlePheSerValPheAlaGl : 212 ||! ||||||! !|||||||||...|||||||||||| |||:!!!.!.!. ! lnThrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMetIleMe 300245 : AAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGATGATCAT : 300301 213 : yPheSerValLeuValLeuAlaCysAsnIleAlaValValLeuValThrHisAlaCys : 231 !!:!!:!||| !..! !|||! !!:!:!:|||!.!:!!!!!||||||||| !||| tTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHisIleCys 300302 : GTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCATATCTGT : 300358 232 : GlyGlnIleGlnIleIleIleGlyGlnLeuAsnSerLeuIleAsp : 246 ||||||||||||||| !!:!.!::!|||.!...!|||:!:!!: GlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGlu 300359 : GGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAG : 300405 vulgar: gi|861722545|gb|AKO90015.1| 173 246 . KQ414889.1 300186 300405 + 163 M 73 219 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300187 300405 163 + . gene_id 14 ; sequence gi|861722545|gb|AKO90015.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 300187 300405 . + . KQ414889.1 exonerate:protein2genome:local exon 300187 300405 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300187 300405 163 + . alignment_id 14 ; Query gi|861722545|gb|AKO90015.1| ; Align 300187 174 219 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722545|gb|AKO90015.1| odorant receptor 51 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 5 -> 244 Target range: 194126 -> 194831 6 : LysLysAsnSerGlnThrLysLysLysIleAsnLeuThrValPheAspAspIleGluT : 25 ||||||:::!:! ! !!!. !!. !!!.||| !..! !!! !:!!..! LysLysSerAsnTyrArgAsnValAsnTyrLysLeuAspThrGluTyrAlaValArgV 194127 : aagaaatcgAATTACCGCAACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAG : 194184 26 : yrThrGlnGlnLeuLeuSerIleLeuAlaIleTrpProLeuValThrLysSerSerTh : 44 .!!:!! !||||||!!! :!!!.!||||||||| ! !:!!..!||| alAlaLysAlaLeuLeuThrProIleGlyIleTrpPro------ArgGluAspSerLe 194185 : TAGCAAAAGCGCTTCTAACACCGATCGGTATCTGGCCA------AGGGAGGATTCTCT : 194235 45 : rIleLysLysIleLeuSerTrpIleHisLeuLeuValIleIleGlySerLeuIleTrp : 63 ! ! ! !:!:!!! ! !!:: !!!. ! !|||:!!.!!!.!! !:!! !!:: uArgAspArgValArgLeuPheAlaGlnThrGlyValValPheAlaLeuMetCysPhe 194236 : TCGCGACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTTCGCTTTGATGTGCTTT : 194292 64 : AsnIleLeuPheArgCysIlePheIleTyrIleTyrValLysLysPheAspAspGlnI : 83 :!::!! !!.! |||!:!! !|||.!! !! !:!! ! .!. ! ! LeuLeuValProHisValIleTyrThrTyrPheAspCysGluAspLeuThrArgTyrM 194293 : CTACTGGTACCTCACGTGATCTACACTTACTTCGACTGCGAGGATCTGACGAGGTACA : 194352 84 : leMetLeuIleGlyProThrPhePheArgValIleIleLeuLeuLysTyrLeuAlaIl : 102 !:! !:!!|||!.! !! ! ! |||!!!:!!:!: :!!:!!|||!:!! !.!!!! etLysValIleAlaAlaGlnValPheSerLeuLeuAlaIleIleLysPheTrpThrMe 194353 : TGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGAT : 194409 103 : eIleTyrHisArgLysThrIleLysLysIlePheAsnHisIleGlnThrAspArgSer : 121 :||| :!!|||||| !|||!:! !.!. .!.!!::!!|||.!. !!!! tIleValAsnArgLysGluIleArgPheCysLeuLeuGluMetGluThrGlnTyrArg 194410 : GATCGTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGA : 194466 122 : GlyValGluCysGlnGluGlnGlnAsnIleMetMetArgAsnValGlnIleAsnArgH : 141 ! !|||||||||:!!|||.!.!:!.!.:!:|||! !!.! !!.!:!!|||..!||| AspValGluCysGluGluAspArgGlnValMetThrAsnCysAlaLysIleGlyArgP 194467 : GACGTGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGCGCGAAAATCGGCCGAT : 194526 142 : isValThrLeuValPheAlaIlePheMetTyrSerSerGlyThrPheTyrAsnPheVa : 160 ! !!||| !:!!!:! ! !.!! |||.!!.!!!.! ! |||:!!.!!:! hePheThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIl 194527 : TTTTTACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTTTGCCGTACCACATTAT : 194583 161 : lMetProHisIleLeuProLeuLeuThrHisArgGlySerArgAsnThrSerGlnArg : 179 !:!:|||! !!:! ! ! !:!!..! !:!! !..!!.!!:!|||..! !! ! eLeuProLeuMetSerGluArgIleVal---LysGluAspAsnSerThrGlnIlePro 194584 : TCTACCTCTGATGTCGGAGAGGATTGTC---AAGGAGGATAACAGTACTCAGATACCT : 194637 180 : LeuThrIlePheProGlyTyrAsnValLeuSerAspValGlnLysSerProIleTyrG : 199 ||| !! !!!. !..!||| |||!!!! !! :!!:!! ! ||||||||||||| LeuProTyrLeuSerAsnTyr---ValPhePheAlaIleGluAspSerProIleTyrG 194638 : CTGCCATATTTGAGCAACTAT---GTTTTCTTCGCGATCGAAGACTCGCCGATTTACG : 194694 200 : luIleThrPhePhePheHisIlePheSerValPheAlaGlyPheSerValLeuValLe : 218 ||||||||||| !!! !!.|||.!.! ! ! ! ! !!!.|||..! ! ! luIleThrPheValSerGlnIleLeuIleSerSerIleIleLeuSerThrAsnCysGl 194695 : AGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCATATTGTCGACGAATTGTGG : 194751 219 : uAlaCysAsnIleAlaValValLeuValThrHisAlaCysGlyGlnIleGlnIleIle : 237 ! !! !!:!:!:!.!!.!..!:!!:!!! !|||..!|||||| !.!!:!!:!:! ! yIleTyrSerLeuValAlaThrIleIleMetHisCysCysGlyLeuPheGluValThr 194752 : GATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGTGGCTTGTTCGAAGTGACC : 194808 238 : IleGlyGlnLeuAsnSerLeu : 244 ! ! !!::!:!!.!.!!!:!! SerArgArgMetGluThrIle 194809 : AGCAGAAGGATGGAGACTATT : 194831 vulgar: gi|861722545|gb|AKO90015.1| 5 244 . KQ414889.1 194126 194831 + 139 M 32 96 G 2 0 M 130 390 G 1 0 M 16 48 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194127 194831 139 + . gene_id 15 ; sequence gi|861722545|gb|AKO90015.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194127 194831 . + . KQ414889.1 exonerate:protein2genome:local exon 194127 194831 . + . insertions 0 ; deletions 4 KQ414889.1 exonerate:protein2genome:local similarity 194127 194831 139 + . alignment_id 15 ; Query gi|861722545|gb|AKO90015.1| ; Align 194127 6 96 ; Align 194223 40 390 ; Align 194613 171 48 ; Align 194661 188 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722548|gb|AKO90016.1| odorant receptor 52 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 8 -> 256 Target range: 236852 -> 237599 9 : TyrAlaValAlaTrpAsnArgThrSerLeuArgPheValGlyLeuTrpProGluProA : 28 |||::!:!! !||||||||| !:!!:!!!:! !:!!||| !||||||:!! !: TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrpProGlnPheS 236853 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGGCCACAGTTCT : 236910 29 : snAspGlyPhePheThrLysLeuLysGlyTrpLeuGly<-><->AlaTrpSerIlePh : 45 ::.....!.!! ! !!!.:!!... !! |||..! ..!!::!!! !.! erSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrThrAlaIl 236911 : CGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACACCGCAAT : 236967 46 : eMetThrIleTyrLeuProGlnSerThrLeuAlaTyrValAsnTrpGlyAspMetAsn : 64 .:!: ! :!!||| ||| !! ! ! :!!.!. ||| !.!. !! eLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyr 236968 : ACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTAC : 237024 65 : AlaValIleGluSerLeuSerIleAsnGlyProIleLeuIleAlaIleIleLysIleI : 84 .!! !:!::!!! !|||.!! .!!! ! :!!.!!..!||||||!.. !! ThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrT 237025 : ACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACA : 237084 85 : leIlePheArgHisTyrArgAspValLeuLysLeuAlaIleValThrMetThrLysAs : 103 !!!:.!. !! ||| ! ..!:!!:::! ! !.!! ! !||| !! || hrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAs 237085 : CCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGA : 237141 104 : pTrpAsnGluLeuArgSerLysGluGluTyrLysValMetLeuLysThrAlaLysIle : 122 ||||!.. ! ! ||||||::: :::|||||||||||| !||||||.!! pTrpArgThrThrThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPhe 237142 : TTGGAGAACGACGacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTT : 237198 123 : SerArgIleIleSerValThrSerThrIleIleThrAsnThrLeuPheIleAlaPheV : 142 |||||| ! :!!:!!:!!!!!||||||.!!! !:!! ! !.!.:!!!.!!:! SerArgTyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrC 237199 : AGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATT : 237258 143 : alPhePheLysIleTrpIleGlyMetGlnLeuMetLysArgThrAspLeuAspProAr : 161 ! !!.!.! ! ! ! ! !||| :!!:!! !!!.! ! ! ! ysValMetThrAlaSerThrThrMetValValValValGlyAsnLysThrThrIleLe 237259 : GTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGGAAACAAGACTACGATCTT : 237315 162 : gLeuSerValGlyLeu<->LeuTyrProGlyTyrLeuProPheAspSerArgIleMet : 179 !! ! !:!! !||| :!!||| !||| !|||||| !!|||!!!!.!! !||| uArgValLeuProLeuProMetTyrLysGlyLeuLeuProValAspThrAsnThrMet 237316 : GCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATG : 237372 180 : ThrTyrPheIleProThrTrpIleAlaGlnCysPheAlaThrCysPheSerMetThrA : 199 !.! !!.!!:!! ! :!::!!|||! !.!!:!! !! !.!.:!!! !.!: AsnAspIleValVal------LeuSerGlnPheLeuSerGlyPheIleAlaAsnAsnS 237373 : AACGACATCGTTGTT------TTGTCACAATTTCTCTCCGGATTTATAGCGAACAACA : 237426 200 : laTyrAlaAlaPheAspThrPheValSerCysMetValLeuHisIleCysGlyGlnLe : 218 :! !::! !! !:!.!!..!|||..!:!:..!! !||| ! !|||||||| erAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAlaSerGlyGlnLe 237427 : GTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGCGTCTGGCCAGTT : 237483 219 : uAlaValIleGlyValSerLeuLysAsnLeuIleAsnAspAspValLysValAspSer : 237 |::!|||:!! !:!!|||:!!:!!:!!!!!:!:!:!!!:! !::: !! !.! uSerValValMetLeuSerIleGluAspPheValSerGluAlaArgArgArgGlyLys 237484 : GAGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGAAGCGAGACGCAGAGGGAAG : 237540 238 : LysValPheTrpIleLysPheSerGluIleIleLysHisHisGluGluIleAsnLys : 256 ! ! ! !!:: !:!!.!. !! !|||:!::!!.!.||| !..!:!: ||| AspAspHisPheAspGluIleProThrIleValGluGluHisLeuArgValLeuLys 237541 : GACGATCATTTCGACGAAATACCGACAATCGTGGAGGAACATTTGAGAGTGTTGAAG : 237599 vulgar: gi|861722548|gb|AKO90016.1| 8 256 . KQ414889.1 236852 237599 + 110 M 32 96 G 0 6 M 126 378 G 0 3 M 18 54 G 2 0 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236853 237599 110 + . gene_id 1 ; sequence gi|861722548|gb|AKO90016.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236853 237599 . + . KQ414889.1 exonerate:protein2genome:local exon 236853 237599 . + . insertions 9 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236853 237599 110 + . alignment_id 1 ; Query gi|861722548|gb|AKO90016.1| ; Align 236853 9 96 ; Align 236955 41 378 ; Align 237336 167 54 ; Align 237390 187 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722533|gb|AKO90011.1| odorant receptor 47 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 432 Query range: 15 -> 298 Target range: 217165 -> 219252 16 : AsnSerLysTyrAlaLeuAspAlaAsnArgTrpIleLeuLysIleLeuGlyValTrpH : 35 ||| ... ::!:!!.!. !|||||||||:!:|||||| :!!|||:!!|||! AsnIleAsnLeuSerIleGlnTrpAsnArgTrpLeuLeuLysProMetGlyLeuTrpP 217166 : aatataaatctcaGTATCCAATGGAATCGTTGGTTGTTGAAACCGATGGGTCTTTGGC : 217223 36 : isPheAlaIleAspSerSerTyrPheHisLysValIleAlaLeuCysHisIleIleIl : 54 !:!! ! !!!!!!! ! !!..|||:!!:!! ! ! ! ! !:! roAsnSerArgThrThrThrArgSerArgLysIleLeuTyrLysLeuIleAsnAlaLe 217224 : CAAACTCACGTACCACCACCAGATCCCGAAAAATCCTCTACAAACTGATAAACGCCTT : 217280 55 : eCysThrPheLeuLeuSerPheValValIleProGlyIleLeuPheIlePheValIle : 73 !||| ! !|||:!!||||||:!! !!:!!||| !! !:!!!:!:!:|||:!! ! uCysTyrGlyLeuIleSerPheLeuPheValProCysSerMetTyrValPheLeuGlu 217281 : ATGCTACGGTTTGATAAGCTTTCTATTCGTACCGTGCTCCATGTACGTGTTCCTCGAA : 217337 74 : ValLysAspValThrThrArgLeuArgIleSerGlyValPheSerPheCysValMetG : 93 |||:!!|||:!! ! !!:!|||!:!:!:! !||| !!!.! !||||||||||||! ValGluAspLeuTyrAspLysLeuLysLeuPheGlyProLeuIlePheCysValMetA 217338 : GTTGAAGATCTCTACGACAAGTTGAAACTGTTCGGTCCGTTGATCTTCTGCGTGATGG : 217397 94 : lyValIleLysTyrTyrTyrLeuIleLysSerAsnLysGlnIleGlyAsnCysValLy : 112 .! !!:!!|||||||||! !|||||| !!!. !.!.||| !!.!.||||||!: laPheValLysTyrTyrSerLeuIleValHisLysAlaAspIleArgGluCysValAr 217398 : CGTTCGTCAAGTATTACTCTCTGATCGTTCACAAGGCGGACATTCGCGAGTGCGTGAG : 217454 113 : sGlnPheAsnSerAspTrpAlaGlnIleAsnAspIleLysAspLysThrIleMetVal : 131 !::!.!!.!. !!|||||| !.!.:!!!.. ! ||||||!:! ! |||:!! gArgIleGluArgAspTrpArgAsnValArgCysGluLysAspArgGluAlaMetIle 217455 : AAGAATCGAACGGGACTGGAGGAATGTCAGATGCGAGAAAGACAGGGAGGCGATGATA : 217511 132 : LysTyrAlaArgPheGlyArgAsnSerSerIleIleCysAlaAlaPheMetTyrGlyS : 151 ! !!|||!.!|||||||||!!.! ! !:!!:!!|||.!! !|||||||||.!!. ValAsnAlaAsnPheGlyArgLysLeuValLeuLeuCysThrPhePheMetTyrSerG 217512 : GTGAACGCGAATTTTGGCCGTAAATTGGTCCTACTCTGTACCTTCTTCATGTACAGCg : 217571 152 : erCysMetPheTyrAlaCysIleLeuPro<->HisValSerGlyValPheLysAsnLy : 169 .. :::|||||| ! !:!!||| !|||.!! !!:!!.!...!.!.!! lyPheValPheTyrTyrIleAlaIleProIleSerValGlyArgIleLeuSerGluAs 217572 : gtttcgttttttattacatCGCTATACCGATCAGCGTGGGGAGAATTCTATCGGAGAA : 217628 170 : sAsnAspProThrGluArgThrPheAlaTyrProCysHisPheIleValPheAsnGln : 188 ....:!!! !||| ! ! !!!!.!.!!:!|||! ! !:!!.!!:!! nGlyAsnLeuThrPheIleProLeuValPheProPheThrLysTyrIleIleAspThr 217629 : TGGAAACCTTACCTTTATTCCGTTGGTGTTTCCTTTTACGAAGTATATCATCGATACT : 217685 189 : TyrGluSerProAlaTyrGluIleValPheSerIleHisCysCysCysAlaPheValL : 208 ! ! !!!|||.!! !!||||||||||||! !:!!!!.! !..!!.! !:!!: ArgTyrThrProThrAsnGluIleValPhePheLeuGlnLeuIleAlaGlyAlaLeuM 217686 : CGTTACACTCCTACGAACGAAATTGTGTTTTTCCTTCAATTGATCGCTGGAGCTTTGA : 217745 209 : euAlaSerIleSerAsnAlaAlaCysAsnLeuIleThrValLeuIleThrHisAlaCy : 227 !! !.!!|||!!!:::|||||||||!:!||| .!!!.!!!! ..!|||||||| etHisGlyIleThrSerAlaAlaCysSerLeuAlaAlaAlaPheAlaValHisAlaCy 217746 : TGCACGGAATCACGTCGGCTGCTTGCAGTTTGGCGGCAGCTTTCGCGGTTCATGCCTG : 217802 228 : sGlyGlnLeuGluIleLeuMetValTrpLeuAsnAspLeu<-><->AspSerCysGln : 244 |||||||:!!|||:!:|||||| !||||||.!. !!||| ! !!!!....!. sGlyGlnIleGluValLeuMetAsnTrpLeuGlnHisLeuIleAspGlyArgAlaAsp 217803 : CGGCCAGATCGAGGTGTTGATGAACTGGCTGCAACATTTAATCGACGGTAGAGCGGAT : 217859 245 : GlnAsnGluValTyrAlaGluLysTyrSerLysIleIleLysGlnHisValLysThrI : 264 ..!!:!!!:..! ! !! !:! !:!!!..|||:!!!..|||||||||::!! !: MetSerAspThrValAspGlyArgIleAlaSerIleValSerGlnHisValArgIleL 217860 : ATGAGCGATACTGTGGATGGTAGAATCGCGAGCATCGTCAGTCAACACGTTCGGATAT : 217919 265 : le{Ar} >>>> Target Intron 1 >>>> {g}PheIleValLysIleGluAs : 272 !!{!:} 1229 bp {!}|||:::..! ! !|||!. eu{Ly}++ ++{s}PheLeuThrLeuThrGluAr 217920 : TA{AA}gt.........................ag{a}tttttgaCGCTCACAGAGAG : 219172 273 : nLeuPheGlnGlnIleCysPheValGluValValGlyCysThrLeuIleIleCysLeu : 291 . !.!!|||||||||! !|||!.!||| !!:!!|||||||||:!! !||||||||| gThrLeuGlnGlnIleSerPheAlaGluPheLeuGlyCysThrMetAspIleCysLeu 219173 : AACCCTCCAGCAAATCTCTTTCGCTGAATTTCTAGGATGCACCATGGACATATGTCTC : 219229 292 : ValGlyTyrTyrValLeuLeu : 298 ||||||||||||:!!:!!:!! ValGlyTyrTyrIleIleVal 219230 : GTTGGATATTACATTATCGTG : 219252 vulgar: gi|861722533|gb|AKO90011.1| 15 298 . KQ414889.1 217165 219252 + 432 M 145 435 G 0 3 M 80 240 G 0 6 M 24 72 S 0 2 5 0 2 I 0 1225 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 217166 219252 432 + . gene_id 1 ; sequence gi|861722533|gb|AKO90011.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 217166 217923 . + . KQ414889.1 exonerate:protein2genome:local exon 217166 217923 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 217924 217925 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 217924 219152 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219151 219152 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 219153 219252 . + . KQ414889.1 exonerate:protein2genome:local exon 219153 219252 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 217166 219252 432 + . alignment_id 1 ; Query gi|861722533|gb|AKO90011.1| ; Align 217166 16 435 ; Align 217604 161 240 ; Align 217850 241 72 ; Align 219154 266 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722533|gb|AKO90011.1| odorant receptor 47 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 430 Query range: 23 -> 298 Target range: 208227 -> 210597 24 : AsnArgTrpIleLeuLysIleLeuGlyValTrpHisPheAlaIleAspSerSerTyrP : 43 ||| !|||! |||||||||:!!||| !|||! :!!|||||| !!|||!::! AsnValTrpThrLeuLysIleIleGlySerTrpProArgSerIleAspArgSerTrpL 208228 : AACGTGTGGACGTTGAAGATAATCGGCTCCTGGCCGAGATCTATAGATCGTTCCTGGT : 208285 44 : heHisLysValIleAlaLeuCysHisIleIleIleCysThrPheLeuLeuSerPheVa : 62 !..!.!!. ! !:!! ! ! !:!!:!! !! !! !||||||.!!|||:! euGluAsnSerGlnHisIleLeuLeuAsnValLeuSerHisCysLeuLeuGlyPheIl 208286 : TAGAGAACAGCCAGCATATTCTCTTAAACGTACTCAGTCACTGTTTGCTCGGTTTCAT : 208342 63 : lValIleProGlyIleLeuPheIlePheValIleValLysAspValThrThrArgLeu : 81 !||||||||| ! !:!!||| .!!:!!:!!|||:!!||| !! ! !!:!||| eValIleProThrGlyMetPheAlaIleLeuValValGluAspPheTyrAspGlnLeu 208343 : CGTGATACCGACCGGCATGTTCGCGATCCTCGTAGTCGAGGATTTTTACGACCAATTA : 208399 82 : ArgIleSerGlyValPheSerPheCysValMetGlyValIleLysTyrTyrTyrLeuI : 101 !:!|||!!!.!!!.!.!.||||||! !:!!|||!.! !!! |||||| !:!!! LysIleCysSerAlaLeuSerPhePheMetMetAlaPheThrLysTyrValIleMetT 208400 : AAGATCTGTAGCGCTCTGAGCTTCTTCATGATGGCGTTCACGAAGTACGTGATCATGA : 208459 102 : leLysSerAsnLysGlnIleGlyAsnCysValLysGlnPheAsnSerAspTrpAlaGl : 120 ! !!.!. .!.||| !!!!.||||||:!! ! !!.!.:!!|||||| !.! hrValArgGluGlyAspIleArgLysCysValGluTyrValGluAlaAspTrpArgAs 208460 : CTGTCCGCGAGGGTGACATACGGAAGTGTGTCGAGTACGTCGAGGCTGATTGGAGAAA : 208516 121 : nIleAsnAspIleLysAspLysThrIleMetValLysTyrAlaArgPheGlyArgAsn : 139 .:!:.!. !! :!!|||!:!! !||||||:!! ! !!|||!!!|||!.!|||!!. nValGluHisGluGluAspArgLysIleMetLeuAspAsnAlaSerPheAlaArgLys 208517 : CGTGGAGCACGAGGAGGACAGGAAGATCATGTTGGACAACGCGAGTTTCGCCAGGAAA : 208573 140 : SerSerIleIleCysAlaAlaPheMetTyrGlySerCysMetPheTyrAlaCysIleL : 159 !! !:!:||||||!.!|||||||||||||||.!. :::|||||| ! !| LeuIleValIleCysGlyAlaPheMetTyrGlyGlyValIlePheTyrTyrIleAlaL 208574 : CTGATCGTGATATGCGGAGCTTTCATGTACGGAGGtgtaattttctattacaTCGCTT : 208633 160 : euProHisVal<->SerGlyValPheLysAsnLysAsnAspProThrGluArgThrPh : 177 |||||! !..! ..! !||| !!:!!.!. ..!:!! !||| ! |||! !.! euProLeuThrArgAspLysValValGluGluGlyGlyAsnLeuThrTyrArgArgLe 208634 : TGCCGCTCACTCGAGACAAGGTCGTCGAGGAGGGTGGCAATTTGACGTACAGAAGGCT : 208690 178 : eAlaTyrProCysHisPheIleValPheAsnGlnTyrGluSerProAlaTyrGluIle : 196 .!.!|||||| !! ! .!!:!!.!.:!! ! ||||||!.! !!|||||| uValTyrProValProLysPheIleLeuAspValArgTyrSerProValAsnGluIle 208691 : GGTTTATCCTGTTCCTAAGTTCATTCTGGACGTTCGATACAGTCCTGTGAATGAGATT : 208747 197 : ValPheSerIleHisCysCysCysAlaPheValLeuAlaSerIleSerAsnAlaAlaC : 216 !!!:!!!!:!!!!.! ! ! !.!|||||| ! !!:!|||!!! !!.!|||| PheTyrThrValGlnLeuLeuSerGlyPheValAlaHisAsnIleThrValGlyAlaC 208748 : TTTTATACGGTACAATTGTTGTCGGGTTTCGTTGCTCATAATATCACGGTTGGGGCTT : 208807 217 : ysAsnLeuIleThrValLeuIleThrHisAlaCysGlyGlnLeuGluIleLeuMetVa : 235 ||..!||| !.!!:!!||| ! !||||||||||||||||||:!!||||||||| ysGlyLeuAlaAlaLeuLeuAlaMetHisAlaCysGlyGlnLeuGlnIleLeuMetSe 208808 : GCGGTTTGGCCGCGCTGCTCGCGATGCACGCGTGCGGACAGCTGCAGATTTTGATGTC : 208864 236 : lTrpLeuAsnAspLeuAspSerCysGlnGlnAsnGluVal<-><->TyrAlaGluLys : 252 !|||:!!.!. ! |||! !..! ! !:!:!!:!!|||! ! ! ! !:!!!:! rTrpMetGluLysLeuValAspGlyArgGluAspGluGluLysAsnLeuAspGlnArg 208865 : CTGGATGGAGAAGTTGGTCGATGGACGGGAGGACGAGGAGAAGAATTTGGATCAGAGG : 208921 253 : TyrSerLysIleIleLysGlnHisValLysThrIle{Ar} >>>> Target Intr : 265 ! :!!!!.|||:!::!!|||||||||::!..!|||{!.} 1536 bp LeuAlaAsnIleValGluGlnHisValArgValIle{As}++ 208922 : TTGGCTAATATCGTGGAGCAGCATGTTCGAGTGATC{AA}gt................ : 208964 266 : on 1 >>>> {g}PheIleValLysIleGluAsnLeuPheGlnGlnIleCysPheVa : 280 {!}||||||!.! !! !|||||||||.!.!!.:!!|||! !!.:! ++{n}PheIleAlaLeuThrGluAsnLeuLeuHisGluIleSerLeuIl 208965 : .........ag{T}TTTATAGCTCTGACAGAGAACCTCCTGCACGAGATATCATTGAT : 210541 281 : lGluValValGlyCysThrLeuIleIleCysLeuValGlyTyrTyrValLeuLeu : 298 !|||:!!|||||||||||||||! !!!:|||!!!:!!|||||||||..!:!!:!! eGluMetValGlyCysThrLeuAsnMetCysPheLeuGlyTyrTyrThrMetIle 210542 : AGAAATGGTGGGGTGCACTCTGAACATGTGTTTCCTTGGCTATTACACGATGATT : 210597 vulgar: gi|861722533|gb|AKO90011.1| 23 298 . KQ414889.1 208227 210597 + 430 M 139 417 G 0 3 M 86 258 G 0 6 M 16 48 S 0 2 5 0 2 I 0 1532 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 208228 210597 430 + . gene_id 2 ; sequence gi|861722533|gb|AKO90011.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 208228 208961 . + . KQ414889.1 exonerate:protein2genome:local exon 208228 208961 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 208962 208963 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 208962 210497 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 210496 210497 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 210498 210597 . + . KQ414889.1 exonerate:protein2genome:local exon 210498 210597 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 208228 210597 430 + . alignment_id 2 ; Query gi|861722533|gb|AKO90011.1| ; Align 208228 24 417 ; Align 208648 163 258 ; Align 208912 249 48 ; Align 210499 266 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722533|gb|AKO90011.1| odorant receptor 47 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 418 Query range: 18 -> 297 Target range: 284523 -> 286795 19 : TyrAlaLeuAspAlaAsnArgTrpIleLeuLysIleLeuGlyValTrpHisPheAlaI : 38 |||::!:!!.!. !|||||||||.!!|||||| :!!|||||||||! !.!!::!: TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 284524 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 284581 39 : leAspSerSerTyrPheHisLysValIleAlaLeuCysHisIleIleIleCysThrPh : 57 !! ! !!!! !!!..!.|||:!!! !:!!:!! !! ! :!!||| !! !|| euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 284582 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGTTT : 284638 58 : eLeuLeuSerPheValValIlePro<->GlyIleLeuPheIlePheValIleValLys : 75 ||||:!!.!!|||:!!:!!:!!||| !.!:!:! ! :!:.!!! !! !..! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 284639 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 284695 76 : AspValThrThrArgLeuArgIleSerGlyValPheSerPheCysValMetGlyValI : 95 |||:!! !|||!:!:!!!:!!!:! !||| !.!.|||||||||:!!|||!.!!.!| AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysMetMetAlaAlaI 284696 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTGAGTTTCTGCATGATGGCAGCGA : 284755 96 : leLysTyrTyrTyrLeuIleLysSerAsnLysGlnIleGlyAsnCysValLysGlnPh : 114 ||||||||||| !||||||..! !!..! :!!||||||.!.|||||||||.!..! leLysTyrTyrIleLeuIleSerArgGlyGlyLysIleGlyGlnCysValLysAspIl 284756 : TCAAGTATTACATTCTAATTTCGCGCGGCGGCAAGATCGGCCAATGCGTGAAGGACAT : 284812 115 : eAsnSerAsp{Tr} >>>> Target Intron 1 >>>> {p}AlaGlnIleAsn : 122 !..!:!!|||{||} 1012 bp {|} !..! !!:: eArgAlaAsp{Tr}++ +-{p}LeuSerHisSer 284813 : TCGTGCGGAC{TG}gt.........................ac{G}CTTTCGCATAGt : 285848 123 : AspIleLysAspLysThrIleMetValLysTyrAlaArgPheGlyArgAsnSerSerI : 142 ... ::::::::: |||||| ! ! !||||||.!!||||||::!! !:!!| GlnGluGluGluArgGluIleMetArgAspSerAlaArgIleGlyArgSerLeuAlaI 285849 : caagaagaggagagagagatcaTGAGGGACAGCGCTAGAATTGGACGATCTTTGGCGA : 285908 143 : leIleCysAlaAlaPheMetTyrGlySerCysMetPheTyrAlaCysIleLeuProHi : 161 ||.!!||||||!.!|||||||||..!.!! ! .!.||||||.!! :!::!!||| lePheCysAlaGlyPheMetTyrSerGlyGlyPhePheTyrThrThrValMetProLe 285909 : TCTTCTGCGCCGGTTTCATGTATTCCGGAGGATTTTTCTACACCACGGTGATGCCGTT : 285965 162 : sValSerGlyValPheLysAsnLysAsnAspProThrGluArgThrPheAlaTyrPro : 180 !!!!! ! ! :!!! !! :!!:!! !|||! !|||:!! |||!:!||| uCysThrValArgThrGluIleIleAspAsnGluThrValArgSerGlnAlaPhePro 285966 : GTGCACAGTACGCACGGAGATCATCGACAACGAGACCGTGAGATCTCAAGCGTTCCCG : 286022 181 : CysHisPheIleValPheAsnGlnTyrGluSerProAlaTyrGluIleValPheSerI : 200 !:!! ! !:!!.!!:!!! ! ! ||||||:!!!:!||||||||| ! !! IleTyrArgGlyLeuLeuAspProArgThrSerProSerPheGluIleValGlnPheM 286023 : ATCTATCGCGGCCTTCTCGATCCGCGTACCAGCCCGTCGTTCGAGATCGTGCAATTCA : 286082 201 : leHisCysCysCysAlaPheValLeuAlaSerIleSerAsnAlaAlaCysAsnLeuIl : 219 !:!!.|||! ..!|||||||||:!! !|||:!!!!! !!.!||||||!:!||| etGlnCysLeuAlaAlaPheValIleTyrSerValThrValGlyAlaCysSerLeuAl 286083 : TGCAATGCTTGGCCGCGTTCGTTATATACTCGGTCACTGTTGGAGCTTGCAGCTTGGC : 286139 220 : eThrValLeuIleThrHisAlaCysGlyGlnLeuGluIleLeuMetValTrpLeuAsn : 238 !.!!|||!!!:!!! !|||!.!|||||||||!!!..!||||||:!!..! !|||:!! aAlaValPheValMetHisValCysGlyGlnPheArgIleLeuValThrLysLeuAsp 286140 : TGCTGTGTTCGTCATGCACGTCTGTGGACAATTTAGGATACTTGTGACAAAGCTGGAT : 286196 239 : AspLeu<->AspSerCysGlnGlnAsnGlu<-><-><->ValTyrAlaGluLysTyrS : 254 ! ||| |||.!! :!! !!..:!! ..!:!!! !:!!::! . LysLeuValAspGlyValLysGlyArgLysGlyLeuSerThrHisGluGlnArgLeuG 286197 : AAGCTCGTCGACGGAGTGAAAGGGAGGAAGGGGTTGAGCACGCATGAACAACGACTGG : 286256 255 : erLysIleIleLysGlnHisValLysThrIle{Ar} >>>> Target Intron 2 : 265 !! ! ||||||:!!!!.|||:!!|||! !:!:{ !} 408 bp lyAspIleIleGluHisHisLeuLysIleLeu{Gl}++ 286257 : GAGATATCATCGAGCATCATCTGAAGATACTG{GG}gt.................... : 286293 266 : >>>> {g}PheIleValLysIleGluAsnLeuPheGlnGlnIleCysPheValGlu : 281 {!}|||||| !:!!||||||...|||.!..!.:!!||||||||||||||| ++{y}PheIleSerGlnIleGluGlyLeuLeuAsnGluIleCysPheValGlu 286294 : .....ag{T}TTTATATCGCAAATCGAGGGGCTCCTAAACGAAATATGTTTCGTCGAG : 286745 282 : ValValGlyCysThrLeuIleIleCysLeuValGlyTyrTyrValLeu : 297 |||:!!||||||||||||! !||||||!!!:!!|||||||||:!!||| ValIleGlyCysThrLeuAsnIleCysPheLeuGlyTyrTyrLeuLeu 286746 : GTGATTGGTTGCACGTTGAACATATGCTTTTTGGGATATTATTTACTG : 286795 vulgar: gi|861722533|gb|AKO90011.1| 18 297 . KQ414889.1 284523 286795 + 418 M 47 141 G 0 3 M 52 156 S 0 2 5 0 2 I 0 1008 3 0 2 S 1 1 M 122 366 G 0 3 M 7 21 G 0 9 M 17 51 S 0 2 5 0 2 I 0 404 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 284524 286795 418 + . gene_id 3 ; sequence gi|861722533|gb|AKO90011.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 284524 284825 . + . KQ414889.1 exonerate:protein2genome:local exon 284524 284825 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 284826 284827 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 284826 285837 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 285836 285837 . + . intron_id 0 ; splice_site "AC" KQ414889.1 exonerate:protein2genome:local cds 285838 286290 . + . KQ414889.1 exonerate:protein2genome:local exon 285838 286290 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 286291 286292 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 286291 286698 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 286697 286698 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 286699 286795 . + . KQ414889.1 exonerate:protein2genome:local exon 286699 286795 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 284524 286795 418 + . alignment_id 3 ; Query gi|861722533|gb|AKO90011.1| ; Align 284524 19 141 ; Align 284668 66 156 ; Align 285839 119 366 ; Align 286208 241 21 ; Align 286238 248 51 ; Align 286700 266 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722533|gb|AKO90011.1| odorant receptor 47 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 407 Query range: 19 -> 305 Target range: 226933 -> 228196 20 : AlaLeuAspAlaAsnArgTrpIleLeuLysIleLeuGlyValTrpHisPheAlaIleA : 39 ::!:!!.!. !|||||||||:!:|||||| !||||||:!!|||! ! :!! ! SerIleGlnLeuAsnArgTrpLeuLeuLysProLeuGlyIleTrpProSerSerArgL 226934 : AGCATACAGTTGAATCGTTGGCTGTTGAAACCACTCGGTATCTGGCCGTCGTCGCGCA : 226991 40 : spSerSerTyrPheHisLysValIleAlaLeuCysHisIleIleIleCysThrPheLe : 58 ! |||||| .!. !:! !.!!:!!! !! !.!!:!!||| ! || ysSerSerArgIleGlyArgCysPheSerTrpLeuMetGlyPheLeuCysTyrAlaLe 226992 : AAAGCTCTCGAATAGGAAGATGTTTCTCCTGGTTGATGGGTTTCCTCTGTTACGCGCT : 227048 59 : uLeuSerPheValValIleProGlyIleLeuPheIlePheValIleValLysAspVal : 77 |:!!||||||! !:!!:!! !!.!! !|||!:!:!: !!:!! ||||||! !!.! uMetSerPheGluLeuValSerSerGlyLeuTyrValValLeuGluValLysGlyAla 227049 : GATGAGCTTCGAGTTGGTCTCGAGCGGCTTGTACGTGGTTCTAGAGGTGAAAGGCGCT : 227105 78 : ThrThrArgLeuArgIleSerGlyValPheSerPheCysValMetGlyValIleLysT : 97 !!.!! !|||!:!!!:! !||| !.!.||||||! !!.!|||..!:!!:!!|||| TyrAsnThrLeuLysMetIleGlyProMetSerPhePheAlaMetSerLeuLeuLysT 227106 : TACAACACGCTGAAAATGATCGGTCCGATGTCCTTCTTCGCGATGTCCCTCCTCAAGT : 227165 98 : yrTyrTyrLeuIleLysSerAsnLysGlnIleGlyAsnCysValLysGlnPheAsnSe : 116 ||! ! |||! !.!. ! .!.||| !.!.||||||:!!!:!.!!!!.!! yrSerMetLeuThrPheHisGluAspAspIleLeuGluCysValGluArgIleLysTr 227166 : ACTCCATGTTGACGTTCCACGAGGACGACATTCTCGAGTGCGTCGAACGGATCAAATG : 227222 117 : rAspTrpAlaGlnIleAsnAspIleLysAspLysThrIleMetValLysTyrAlaArg : 135 !|||||| !.!.|||!.. !!:!::!!|||!:!!.!:!:||||||! !|||||| ! pAspTrpLysAsnIleArgTyrLeuGluAspArgAsnValMetValThrTyrAlaTyr 227223 : GGACTGGAAGAATATCAGATACCTGGAGGACAGAAACGTGATGGTGACGTACGCGTAT : 227279 136 : PheGlyArgAsnSerSerIleIleCysAlaAlaPheMetTyrGlySerCysMetPheT : 155 !:!||||||!!.! !! !! !||||||.!! !|||:!:!:!...||| :::|||: TyrGlyArgLysLeuIleThrIleCysThrPhePheValPheSerSerPheValPheP 227280 : TACGGAAGAAAATTGATCACTATTTGCACGTTTTTCGTCTTCAgtagtttcgtatttt : 227339 156 : yrAlaCysIleLeuPro<->HisValSerGlyValPheLysAsnLysAsnAspProTh : 173 :: !:!!:!!||| :!!!.!.!!.!!||| ! !.!. ! ...:!!! !!: heTyrIleValValProIleAsnAlaGlySerValAlaThrGluAspGlyAsnHisSe 227340 : tctacATCGTCGTACCTATCAACGCCGGAAGTGTTGCAACGGAGGACGGAAACCACAG : 227396 174 : rGluArgThrPheAlaTyrProCysHisPheIleValPheAsnGlnTyrGluSerPro : 192 ! ! ! ! !.!. !!!:!|||! !! |||:!! !:!! ! ! |||||| rTyrIleGlnMetProPheProPheProLysIleIleAlaAspValArgTyrSerPro 227397 : TTACATTCAGATGCCGTTTCCGTTTCCAAAAATCATCGCTGACGTTCGTTACAGCCCT : 227453 193 : AlaTyrGluIleValPheSerIleHisCysCysCysAlaPheValLeuAlaSerIleS : 212 ! !!|||||| !!||||||:!!!!.! ! !.!.!!|||||| !.!!:!!! PheAsnGluIlePhePheSerValGlnPheValThrGlyIleValLeuHisGlyValT 227454 : TTCAACGAGATCTTCTTTTCGGTACAATTTGTAACAGGTATCGTGTTGCACGGTGTCA : 227513 213 : erAsnAlaAlaCysAsnLeuIleThrValLeuIleThrHisAlaCysGlyGlnLeuGl : 231 !!:::|||||||||!:!:!! !.!!:!!||| ..!|||||||||||||||:!!|| hrSerAlaAlaCysSerMetAlaAlaLeuLeuAlaValHisAlaCysGlyGlnMetGl 227514 : CGTCAGCTGCTTGCAGTATGGCAGCCCTGCTTGCGGTTCATGCTTGCGGTCAGATGGA : 227570 232 : uIleLeuMetValTrpLeuAsnAspLeu<-><->AspSerCysGlnGlnAsnGluVal : 248 |:!:|||:!! !||||||... !!||| ! !!!!....!...!!:!:!!..! uValLeuValSerTrpLeuGlyHisLeuIleAspGlyArgAlaAspMetSerLysThr 227571 : GGTGTTGGTGTCCTGGCTGGGACATTTGATCGACGGCAGAGCGGATATGAGCAAAACA : 227627 249 : TyrAlaGluLysTyrSerLysIleIleLysGlnHisValLysThrIle{Ar} >>>> : 265 ! !!!:!:! !:!!!..|||:!!! !!.||||||::!! !:!:{!.} LeuAspAspArgIleAlaSerIleValThrHisHisValArgIleLeu{As}++ 227628 : CTGGATGATAGAATCGCTAGCATCGTCACTCACCACGTTCGAATATTG{AA}gt.... : 227682 266 : Target Intron 1 >>>> {g}PheIleValLysIleGluAsnLeuPheGlnGl : 276 396 bp {!}|||:!:!.! ||||||!!. !.!.||||| ++{n}PheLeuAlaLeuIleGluLysThrMetGlnGl 227683 : .....................ag{C}TTTCTGGCCCTCATAGAGAAAACCATGCAGCA : 228107 277 : nIleCysPheValGluValValGlyCysThrLeuIleIleCysLeuValGlyTyrTyr : 295 ||||..!||||||||| !!:!!|||||||||:!!|||:!:||||||:!!! !|||||| nIleAlaPheValGluPheLeuGlyCysThrIleIleLeuCysLeuIleGluTyrTyr 228108 : AATAGCTTTCGTAGAATTTTTAGGGTGTACAATAATTCTGTGCCTCATCGAGTATTAC : 228164 296 : ValLeuLeuAspTrpAsnGlnLysAspThr : 305 :!!:!! !! ! ......||| ||| IleIleThrValArgThrAsnLysLysThr 228165 : ATCATAACGGTACGcacgaataaaaaaaca : 228196 vulgar: gi|861722533|gb|AKO90011.1| 19 305 . KQ414889.1 226933 228196 + 407 M 141 423 G 0 3 M 80 240 G 0 6 M 24 72 S 0 2 5 0 2 I 0 392 3 0 2 S 1 1 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 226934 228196 407 + . gene_id 4 ; sequence gi|861722533|gb|AKO90011.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 226934 227679 . + . KQ414889.1 exonerate:protein2genome:local exon 226934 227679 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 227680 227681 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 227680 228075 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 228074 228075 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 228076 228196 . + . KQ414889.1 exonerate:protein2genome:local exon 228076 228196 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 226934 228196 407 + . alignment_id 4 ; Query gi|861722533|gb|AKO90011.1| ; Align 226934 20 423 ; Align 227360 161 240 ; Align 227606 241 72 ; Align 228077 266 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722533|gb|AKO90011.1| odorant receptor 47 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 400 Query range: 18 -> 297 Target range: 278576 -> 280008 19 : TyrAlaLeuAspAlaAsnArgTrpIleLeuLysIleLeuGlyValTrpHisPheAlaI : 38 |||::!:!!.!. !|||||||||.!!|||||| :!!|||||||||! !.!!::!: TyrSerValGlnMetAsnArgTrpPheLeuLysProIleGlyValTrpProLeuSerL 278577 : TACAGCGTACAGATGAACCGTTGGTTTCTCAAACCGATTGGCGTATGGCCTCTCAGTC : 278634 39 : leAspSerSerTyrPheHisLysValIleAlaLeuCysHisIleIleIleCysThrPh : 57 !! ! !!!! !!!..!.|||:!!! !:!!:!! !! ! :!!||| !! !|| euCysValThrThrLeuGluLysIleSerSerValValLeuAlaLeuIleSerCysPh 278635 : TCTGCGTGACCACCTTGGAAAAGATCAGTTCCGTGGTCCTCGCGTTAATCAGTTGCTT : 278691 58 : eLeuLeuSerPheValValIlePro<->GlyIleLeuPheIlePheValIleValLys : 75 ||||:!!.!!|||:!!:!!:!!||| !.!:!:! ! :!:.!!! !! !..! eLeuIleGlyPheLeuLeuValProCysAlaLeuCysThrValLeuAspLysThrGly 278692 : CCTGATAGGTTTCCTCTTGGTACCGTGCGCTCTGTGCACAGTGCTCGACAAAACCGGC : 278748 76 : AspValThrThrArgLeuArgIleSerGlyValPheSerPheCysValMetGlyValI : 95 |||:!! !|||!:!:!!!:!!!:! !||| !.!.|||||||||..!|||!.!..!| AspLeuAspThrLysIleLysMetIleGlyProLeuSerPheCysThrMetAlaThrI 278749 : GATCTCGACACGAAGATCAAAATGATCGGTCCTCTAAGTTTCTGCACGATGGCAACGA : 278808 96 : leLysTyrTyrTyrLeuIleLysSerAsnLysGlnIleGlyAsnCysValLysGlnPh : 114 ||||||||||| !|||!!:..! !!..! :!!||||||!!.||||||!!..!..! leLysTyrTyrIleLeuMetSerArgGlyGlyLysIleGlyLysCysValAsnAspIl 278809 : TCAAATATTACATTCTAATGTCGCGCGGCGGCAAGATCGGCAAATGCGTGAATGACAT : 278865 115 : eAsnSerAspTrpAla<-><-><->GlnIleAsnAspIleLysAspLysThrIleMet : 130 !..!!!!||||||:!! ..! !...... ::::::::: |||||| eArgThrAspTrpSerLeuThrLeuSerTyrArgGlnGluGluGluArgGluIleMet 278866 : TCGTACGGACTGGTCTCTTACACTTTCGTATCGtcaagaagaggagagagagatcaTG : 278922 131 : ValLysTyrAlaArgPheGlyArgAsnSerSerIleIleCysAlaAlaPheMetTyrG : 150 ! ! !||||||.!!||||||::!! !:!!|||.!! !!|||!.!|||||||||. ArgAspSerAlaArgIleGlyArgSerLeuAlaIlePheSerAlaGlyPheMetTyrS 278923 : AGGGACAGCGCTAGAATTGGACGATCTTTGGCGATCTTCAGCGCCGGTTTCATGTATT : 278982 151 : lySerCysMetPheTyrAlaCysIleLeuProHisValSerGlyValPheLysAsnLy : 169 .!.!! ! :!:||||||.!!..!:!::!!||| !!:!!! ! ! :!!! !! erGlyGlyValPheTyrThrAlaValMetProLeuPheAlaValArgThrGluIleIl 278983 : CCGGCGGAGTTTTCTACACCGCCGTGATGCCGTTGTTCGCAGTACGCACGGAGATCAT : 279039 170 : sAsnAspProThrGluArgThrPheAlaTyrProCysHisPheIleValPheAsnGln : 188 :!!:!! !|||! !|||:!! |||!:!||| !:!! ! !:!!.!!:!!! ! eAspAsnGluThrValArgSerGlnAlaPheProIleTyrArgGlyLeuLeuAspPro 279040 : CGACAATGAAACGGTGAGATCTCAAGCGTTCCCGATCTATCGCGGCCTCCTCGATCCG : 279096 189 : TyrGluSerProAlaTyrGluIleValPheSerIleHisCysCysCysAlaPheValL : 208 ! ||||||:!!!:!||||||||| ! !!!:!!.|||! ..!|||||||||| ArgThrSerProSerPheGluIleValGlnPheMetGlnCysLeuAlaAlaPheValL 279097 : CGTACCAGCCCGTCGTTCGAGATCGTGCAATTCATGCAATGCTTGGCCGCGTTCGTTT : 279156 209 : euAlaSerIleSerAsnAlaAlaCysAsnLeuIleThrValLeuIleThrHisAlaCy : 227 || !|||:!!!!! !!.!||||||!:!||||||.!!|||!!!:!!! !|||!.!|| euTyrSerValThrValGlyAlaCysSerLeuIleAlaValPheValMetHisValCy 279157 : TATACTCGGTCACTGTTGGAGCTTGCAGCTTGATTGCTGTGTTCGTCATGCACGTCTG : 279213 228 : sGlyGlnLeuGluIleLeuMetValTrpLeuAsnAspLeu<->AspSerCysGlnGln : 245 |||||||!!!..!||||||:!!..! !|||:!! ! ||| |||.!! :!! ! sGlyGlnPheArgIleLeuValThrLysLeuAspLysLeuIleAspGlyValLysGly 279214 : TGGGCAATTCAGGATACTTGTGACAAAGCTGGATAAGCTCATCGACGGAGTGAAAGGG : 279270 246 : AsnGlu<-><-><->ValTyrAlaGluLysTyrSerLysIleIleLysGlnHisValL : 262 !..:!! ..!:!!! !:!!::! .!! ! ||||||:!!!!.|||:!!| ArgLysSerLeuSerThrHisGluGlnArgLeuGlyAspIleIleGluHisHisLeuL 279271 : AGGAAGAGCTTGAGCACGCATGAACAACGACTGGGAGATATCATCGAGCATCATCTGA : 279330 263 : ysThrIle{Ar} >>>> Target Intron 1 >>>> {g}PheIleValLysIl : 270 ||! !:!:{ !} 571 bp {!}|||||| !:!!|| ysIleLeu{Gl}++ ++{y}PheIleSerGlnIl 279331 : AGATACTG{GG}gt.........................ag{T}TTTATATCGCAAAT : 279925 271 : eGluAsnLeuPheGlnGlnIleCysPheValGluValValGlyCysThrLeuIleIle : 289 ||||...|||.!..!.:!!||||||||||||||||||:!!||||||||||||! !||| eGluGlyLeuLeuAsnGluIleCysPheValGluValIleGlyCysThrLeuAsnIle 279926 : CGAGGGGCTCCTGAACGAAATATGTTTCGTCGAGGTGATTGGTTGCACGTTGAACATA : 279982 290 : CysLeuValGlyTyrTyrValLeu : 297 |||!!!:!! !||||||:!!||| CysPheLeuThrTyrTyrLeuLeu 279983 : TGCTTTTTGACATATTATTTACTC : 280008 vulgar: gi|861722533|gb|AKO90011.1| 18 297 . KQ414889.1 278576 280008 + 400 M 47 141 G 0 3 M 54 162 G 0 9 M 121 363 G 0 3 M 7 21 G 0 9 M 17 51 S 0 2 5 0 2 I 0 567 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 278577 280008 400 + . gene_id 5 ; sequence gi|861722533|gb|AKO90011.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 278577 279340 . + . KQ414889.1 exonerate:protein2genome:local exon 278577 279340 . + . insertions 24 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 279341 279342 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 279341 279911 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 279910 279911 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 279912 280008 . + . KQ414889.1 exonerate:protein2genome:local exon 279912 280008 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 278577 280008 400 + . alignment_id 5 ; Query gi|861722533|gb|AKO90011.1| ; Align 278577 19 141 ; Align 278721 66 162 ; Align 278892 120 363 ; Align 279258 241 21 ; Align 279288 248 51 ; Align 279913 266 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722533|gb|AKO90011.1| odorant receptor 47 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 383 Query range: 14 -> 267 Target range: 221366 -> 222134 15 : ValAsnSerLysTyrAlaLeuAspAlaAsnArgTrpIleLeuLysIleLeuGlyValT : 34 ..!||| !|||! ::!:!!.!. !!:!||||||||||||||| :!!||||||| ThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProIleGlyValT 221367 : ACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGATCGGTGTTT : 221424 35 : rpHisPheAlaIleAspSerSerTyrPheHisLysValIleAlaLeuCysHisIleIl : 53 ||! !:!! !:!!! !||| ! .!.!:! !:!! !! ! ! !:! rpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLeuIleAsnVa 221425 : GGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCTGATAAACGT : 221481 54 : eIleCysThrPheLeuLeuSerPheValValIleProGlyIleLeuPheIlePheVal : 72 !:!!||| ! !|||:!!!!!|||:!!:!!:!!||| !!! !|||!:!:!:.!!:!! lValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyrValIleLeu 221482 : CGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTACGTGATCCTC : 221538 73 : IleValLysAspValThrThrArgLeuArgIleSerGlyValPheSerPheCysValM : 92 !|||:!!|||||| !!.!|||:!!!:!:!:! !||| !!!.||||||||||||| GluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerPheCysValM 221539 : GAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTTTCTGCGTGA : 221598 93 : etGlyValIleLysTyrTyrTyrLeuIleLysSerAsnLysGlnIleGlyAsnCysVa : 111 ||!.! !!:!!||||||:!! |||||| ! !.!.!!..!.||| !!.!.|||:! etAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleArgGluCysIl 221599 : TGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCGTGAGTGCAT : 221655 112 : lLysGlnPheAsnSerAspTrpAlaGlnIleAsnAspIleLysAspLysThrIleMet : 130 !:!!!::.!!.!.!!!|||||| !.!.|||!.! !! !||||||||| !|||||| eGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLysAspIleMet 221656 : CGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAGGATATAATG : 221712 131 : ValLysTyrAlaArgPheGlyArgAsnSerSerIleIleCysAlaAlaPheMetTyrG : 150 :!!:!! !!|||! !|||||||||...! !! !!!:||||||.!! !|||||||||. IleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPhePheMetTyrS 221713 : ATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTTTCATGTACA : 221772 151 : lySerCysMetPheTyrAlaCysIleLeuProHisValSerGlyValPheLysAsnLy : 169 !!... :::|||||| !:!!||| ! ! !||| !.!! :! erGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIleProAlaGl 221773 : GTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAATTCCTGCGCA : 221829 170 : sAsn<->AspProThrGluArgThrPheAlaTyrProCysHisPheIleValPheAsn : 187 !:!! ::: ||| !!.!.!.!!:!|||! ! .!!:!! !!:!! nAspValAsnValThrPheIleProMetValPheProPheSerArgPheIleValAsp 221830 : GGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTTATCGTCGAT : 221886 188 : GlnTyrGluSerProAlaTyrGluIleValPheSerIleHisCysCysCysAlaPheV : 207 ! ||||||!.! !!||||||:!!||||||:!!!!. ! ...!.! !: ThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetAlaGlyAlaL 221887 : ACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGGCGGGTGCTT : 221946 208 : alLeuAlaSerIleSerAsnAlaAlaCysAsnLeuIleThrValLeuIleThrHisAl : 226 !!:!! !||||||!!!:::|||||||||!:!|||:!!.!!:!!!!! !..!||||| euMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAlaValHisAl 221947 : TGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGCTGTGCACGC : 222003 227 : aCysGlyGlnLeuGluIleLeuMetValTrpLeuAsnAspLeuAspSerCysGlnGln : 245 ||||||||||:!!:!!:!:|||||| !||||||!!. !!||| !!:! !!!:! ! aCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsnGlyArgAla 222004 : TTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAACGGCCGGGCG : 222060 246 : Asn<-><->GluValTyrAlaGluLysTyrSerLysIleIleLysGlnHisValLysT : 263 :!! .!. ! ! !..!!:! :!!||||||:!:!!.|||||||||::!! AspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnHisValArgI 222061 : GATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAACACGTTCGAA : 222120 264 : hrIleArgPheIle : 267 !:!:!:!!:!:!! leLeuGlnTyrVal 222121 : TATTGCAGTATGTA : 222134 vulgar: gi|861722533|gb|AKO90011.1| 14 267 . KQ414889.1 221366 222134 + 383 M 156 468 G 0 3 M 76 228 G 0 6 M 21 63 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221367 222134 383 + . gene_id 6 ; sequence gi|861722533|gb|AKO90011.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221367 222134 . + . KQ414889.1 exonerate:protein2genome:local exon 221367 222134 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221367 222134 383 + . alignment_id 6 ; Query gi|861722533|gb|AKO90011.1| ; Align 221367 15 468 ; Align 221838 171 228 ; Align 222072 247 63 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722533|gb|AKO90011.1| odorant receptor 47 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 364 Query range: 16 -> 297 Target range: 262843 -> 263770 17 : SerLysTyrAlaLeuAspAlaAsnArgTrpIleLeuLysIleLeuGlyValTrpHisP : 36 ||| ! |||::!|||.!. !|||||||||:!:|||||| :!!|||!.!|||! . SerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProIleGlyAlaTrpProL 262844 : AGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGATCGGTGCATGGCCAC : 262901 37 : heAlaIleAspSerSerTyrPheHisLysValIleAlaLeuCysHisIleIleIleCy : 55 !.:!! !...! !||| .!..!.::!:!!||| !!!! ! |||:!!:!!|| euSerAlaSerIleSerArgMetGluArgIleIleTrpPheLeuLeuIleValValCy 262902 : TGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCTCTTAATCGTCGTCTG : 262958 56 : sThrPheLeuLeuSerPheValValIleProGlyIleLeuPheIlePheValIleVal : 74 | !! !|||:!! !! !..!|||||||||..!|||||| !||| !!:!! !!.! sTyrCysLeuIleLeuSerThrValIleProSerIleLeuHisIleValLeuGluAla 262959 : TTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCATATCGTCCTAGAAGCC : 263015 75 : LysAspValThrThrArgLeuArgIleSerGlyValPheSerPheCysValMetGlyV : 94 :!!:!! !! !! !!:!|||!:!:!! !||| !.!!.!! !! !!:!:|||: GluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyGlnTrpPheValGlyM 263016 : GAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTCAGTGGTTCGTCGGTA : 263075 95 : alIleLysTyrTyrTyrLeuIleLysSerAsnLysGlnIleGlyAsnCysValLysGl : 113 !!|||!!.||| !!::|||:!: !!:!|||.!.||| !..!||||||:!!!! etIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGlnGlyCysValGlnHi 263076 : TGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACAAGGTTGCGTGCAACA : 263132 114 : nPheAsnSerAspTrpAlaGlnIleAsnAspIleLysAspLysThrIleMetValLys : 132 . ! .!...!||||||..! :!:!.! :!::!!|||:!! !||||||:!!||| sValGlnGluAspTrpCysIleValThrArgLeuGluAspGlnArgIleMetLeuLys 263133 : CGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAACGTATCATGCTGAAG : 263189 133 : TyrAlaArgPheGlyArgAsnSerSerIleIleCysAlaAlaPheMetTyrGlySerC : 152 !!|||!:!!:!|||||| !! !:!! ! !|||||| !|||||| ! !||| AsnAlaLysTyrGlyArgTyrValAlaAlaSerCysAlaIlePheMetGlnThrSerI 263190 : AACGCGAAATACGGCCGCTACGTGGCAGCTTCTTGCGCGATCTTCATGCAAACGAGCA : 263249 153 : ysMetPheTyrAlaCysIleLeuProHisValSerGlyValPheLysAsnLysAsnAs : 171 !|||! ! ! ..! :!! ! !! !..!!!! !|||.!!:!!:!! |||!! leMetCysLysCysLeuValThrAlaPheThrThrGlnValIleGluAspGlyAsnGl 263250 : TCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGTGATCGAGGACGGTAACGA : 263306 172 : pPro<->ThrGluArgThrPheAlaTyrProCysHisPheIleValPheAsnGlnTyr : 189 : !! ! ! !|||! !.!. !!! !||| :!! :!!.!! !! uThrArgIleLeuArgMetLeuProCysProValTyrLysGluIleIleProValAsp 263307 : GACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAAGAGATCATTCCAGTCGAC : 263363 190 : GluSerProAlaTyrGluIleValPheSerIleHisCysCysCysAlaPheValLeuA : 209 !!:!|||.!! !!|||||| !!.!!:!!! !!.! ! ! !.!|||:!!:!!. ThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheLeuSerGlyPheIleValT 263364 : ACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTCTGTCGGGTTTCATCGTCA : 263423 210 : laSerIleSerAsnAlaAlaCysAsnLeuIleThrValLeuIleThrHisAlaCysGl : 228 !!:!!! !!!! !!.!|||! !..!:!!! !.!!|||!!! ! !||||||||||| hrAlaThrThrValGlyAlaPheGlyMetThrAlaValPheAlaGlyHisAlaCysGl 263424 : CCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTTCGCCGGTCATGCTTGCGG : 263480 229 : yGlnLeuGluIleLeuMetValTrpLeuAsnAspLeuAspSerCysGlnGlnAsnGlu : 247 |||||||.!.:!:|||||| !|||:!!!..!!:!!!! !:! ...::!:!!||| yGlnLeuAsnValLeuMetSerTrpIleThrGluPheValAsnGlnSerArgAspGlu 263481 : ACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTGAACCAGTCCAGGGATGAG : 263537 248 : <-><-><->ValTyrAlaGluLysTyrSerLysIleIleLysGlnHisValLysThrI : 264 :!!||| ! :!! .!! !|||:!!:!!!!.|||:!!!:!..!: AsnLysAsnLeuTyrPheThrGluIleGlyValIleValGluHisHisLeuArgValL 263538 : AATAAGAATCTTTATTTTACCGAGATAGGCGTGATCGTTGAACATCATCTGAGAGTTC : 263597 265 : le{Ar} >>>> Target Intron 1 >>>> {g}PheIleValLysIleGluAs : 272 !:{!!} 72 bp {!}||||||! !:::|||:!!|| eu{Se}++ ++{r}PheIleAspArgIleLysAs 263598 : TG{AG}gt.........................ag{T}TTCATAGATCGTATTAAGAA : 263693 273 : nLeuPheGlnGlnIleCysPheValGluValValGlyCysThrLeuIleIleCysLeu : 291 |:!!.!.... !|||||||||||||||:!! !! !..!|||||| !||||||:!! nValMetSerThrIleCysPheValGluLeuPheLysAlaThrLeuAspIleCysMet 263694 : TGTGATGAGTACGATATGTTTCGTGGAGTTATTCAAGGCTACGCTGGATATATGCATG : 263750 292 : ValGlyTyrTyrValLeu : 297 :!!|||||||||:!!||| LeuGlyTyrTyrIleLeu 263751 : CTAGGTTACTACATACTT : 263770 vulgar: gi|861722533|gb|AKO90011.1| 16 297 . KQ414889.1 262843 263770 + 364 M 156 468 G 0 3 M 75 225 G 0 9 M 17 51 S 0 2 5 0 2 I 0 68 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262844 263770 364 + . gene_id 7 ; sequence gi|861722533|gb|AKO90011.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 262844 263601 . + . KQ414889.1 exonerate:protein2genome:local exon 262844 263601 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 263602 263603 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 263602 263673 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 263672 263673 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 263674 263770 . + . KQ414889.1 exonerate:protein2genome:local exon 263674 263770 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 262844 263770 364 + . alignment_id 7 ; Query gi|861722533|gb|AKO90011.1| ; Align 262844 17 468 ; Align 263315 173 225 ; Align 263549 248 51 ; Align 263675 266 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722533|gb|AKO90011.1| odorant receptor 47 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 363 Query range: 8 -> 298 Target range: 259742 -> 260881 9 : IleIleThrSerLysIleValAsnSerLysTyrAlaLeuAspAlaAsnArgTrpIleL : 28 :!! |||||| ! ! !:!!||| ! |||::!|||.!. !|||||||||.!!| ValGluThrSerPheThrSerHisSerAspTyrSerLeuGlnPheAsnArgTrpPheL 259743 : GTAGAGACGAGTTTCACTAGCCACAGTGACTATAGCCTCCAATTTAATCGATGGTTCC : 259800 29 : euLysIleLeuGlyValTrpHisPheAlaIleAspSerSerTyrPheHisLysValIl : 47 ||||| :!!|||!.!|||! !:!! !..!!!!!!! .!!.!.|||:!!|| euLysProIleGlyAlaTrpProProSerSerSerThrThrArgLeuGluLysIleIl 259801 : TGAAACCGATAGGCGCTTGGCCACCTTCATCCTCCACGACCAGACTCGAGAAGATCAT : 259857 48 : eAlaLeuCysHisIleIleIleCysThrPheLeuLeuSerPheValValIleProGly : 66 |:!!:!! !! |||.!!|||||| ! ! !:!! ! !!..!:!!|||||| !! eSerValIleLeuIlePheIleCysTyrSerThrIleLeuValThrLeuIleProCys 259858 : CTCTGTTATCCTGATCTTTATCTGCTACAGTACCATACTGGTCACCCTGATCCCGTGC : 259914 67 : IleLeuPheIlePheValIleValLysAspValThrThrArgLeuArgIleSerGlyV : 86 :!!||| !!!:.!.:!! !:!!..!:!! !! !!:! !!:!:!: !||| ValLeuHisMetLeuLeuGluLysGluSerLeuTyrMetLysThrLysValLeuGlyP 259915 : GTACTTCACATGCTACTCGAGAAGGAGAGTTTGTACATGAAAACGAAGGTGCTCGGTC : 259974 87 : alPheSerPheCysValMetGlyValIleLysTyrTyrTyrLeuIleLysSerAsnLy : 105 !.!!!!! !!! !!:!:||| !|||!!.||| |||:!: !!!!..!!: roLeuThrHisTrpPheValGlyCysIleAsnTyrThrThrLeuLeuLeuArgGlyAr 259975 : CTCTTACCCACTGGTTCGTCGGCTGTATTAATTACACAACGTTGTTGTTGAGAGGCAG : 260031 106 : sGlnIleGlyAsnCysValLysGlnPheAsnSerAspTrpAlaGlnIleAsnAspIle : 124 !.!.||| !!:!||||||:!!!!. ! .!.!:!|||||| ! |||!.. gAspIleLeuSerCysValGluHisValGluAsnAspTrpArgIleIleThrArgGlu 260032 : AGACATACTTAGCTGCGTGGAACACGTGGAGAACGATTGGAGAATTATAACGAGGGAG : 260088 125 : LysAspLysThrIleMetValLysTyrAlaArgPheGlyArgAsnSerSerIleIleC : 144 ||||||:!!!.!:!:|||:!!!:!||||||!:!||||||||| !! !:!! ! !| LysAspGlnAsnValMetLeuArgTyrAlaLysPheGlyArgTyrValAlaAlaSerC 260089 : AAGGATCAGAACGTGATGTTGAGATACGCGAAATTCGGCAGATACGTCGCTGCCTCTT : 260148 145 : ysAlaAlaPheMetTyrGlySerCysMetPheTyrAlaCysIleLeuProHisValSe : 163 |||||||||||:!! ! |||.!! !:!!! !!:! |||:!::!! !! :!!|| ysAlaAlaPheValGlnGlyGlyValLeuCysPhe---CysLeuValThrValLeuSe 260149 : GCGCGGCTTTCGTGCAGGGCGGAGTTCTGTGCTTC---TGTTTGGTCACGGTGTTGAG : 260202 164 : rGlyValPheLysAsnLysAsnAspProThrGluArgThrPheAlaTyrProCys<-> : 182 | !! ! ! ! !.!. !...:!! !|||..!! !..! ! !! |||||| rThrGluValIleGlnValGlyAsnGluThrArgIleValHisLeuLeuProCysAla 260203 : TACAGAGGTGATACAAGTGGGAAACGAGACGAGGATCGTTCATCTGTTGCCGTGCGCG : 260259 183 : <->HisPheIleValPheAsnGlnTyrGluSerProAlaTyrGluIleValPheSerI : 200 :!! :!!.!.||| ! !!!!:|||||| ! !!|||||||||.!! !: ValTyrLysGluLeuIleAsnValAsnAspSerProMetAsnGluIleValLeuValV 260260 : GTGTACAAAGAGCTGATAAACGTGAACGACAGTCCTATGAACGAGATTGTTCTCGTCG : 260319 201 : leHisCysCysCysAlaPheValLeuAlaSerIleSerAsnAlaAlaCysAsnLeuIl : 219 !:!!.! ! !! !.!|||:!!:!! !|||! !!!! !!.! !! !!:!||| alGlnPheValSerGlyPheIleValAsnSerSerThrValGlyIlePheSerLeuAl 260320 : TGCAATTCGTCTCGGGATTCATAGTGAATTCGAGCACCGTTGGAATCTTCAGTCTCGC : 260376 220 : eThrValLeuIleThrHisAlaCysGlyGlnLeuGluIleLeuMetValTrpLeuAsn : 238 .!!||||||! !.!!||||||||||||||||||.!.:!:||||||! !|||:!!!.. aAlaValLeuThrAlaHisAlaCysGlyGlnLeuAsnValLeuMetGluTrpIleThr 260377 : GGCTGTTCTGACCGCTCACGCGTGCGGCCAGTTGAACGTGCTCATGGAATGGATCACG : 260433 239 : Asp<->LeuAspSerCysGlnGlnAsnGluValTyrAla<-><->GluLysTyrSerL : 255 !!: :!!|||..!! ::!.!.!..:!! ! ! ||| :!!:!! !.!! GluPheValAspGluSerArgAsnArgLysLysLysAlaProPheLysGluIleGlyV 260434 : GAGTTTGTGGACGAGTCGAGGAACAGGAAGAAAAAGGCTCCTTTCAAGGAGATCGGAG : 260493 256 : ysIleIleLysGlnHisValLysThrIle{Ar} >>>> Target Intron 1 >> : 265 !|||:!!:!!!!.|||:!!!:!.!!:!!{! } 257 bp alIleValGluHisHisLeuArgAlaLeu{Th}++ 260494 : TGATTGTCGAACATCATTTGAGAGCACTC{AC}gt....................... : 260527 266 : >> {g}PheIleValLysIleGluAsnLeuPheGlnGlnIleCysPheValGluVal : 282 {!}|||||| !:::||||||:!!:!!.!..!.!:!|||||||||:!!|||:!! ++{r}PheIleSerArgIleGluAspValMetAsnArgIleCysPheLeuGluLeu 260528 : ..ag{C}TTCATATCGCGTATCGAGGATGTGATGAACCGGATATGCTTCCTGGAGTTG : 260831 283 : ValGlyCysThrLeuIleIleCysLeuValGlyTyrTyrValLeuLeu : 298 !! !!||||||||| !|||||||||:!!|||||||||:!!|||:!! PheArgCysThrLeuAspIleCysLeuLeuGlyTyrTyrIleLeuMet 260832 : TTCAGGTGCACTCTGGATATATGTCTACTTGGCTACTATATTCTTATG : 260881 vulgar: gi|861722533|gb|AKO90011.1| 8 298 . KQ414889.1 259742 260881 + 363 M 147 441 G 1 0 M 25 75 G 0 6 M 58 174 G 0 3 M 11 33 G 0 6 M 14 42 S 0 2 5 0 2 I 0 253 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 259743 260881 363 + . gene_id 8 ; sequence gi|861722533|gb|AKO90011.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 259743 260524 . + . KQ414889.1 exonerate:protein2genome:local exon 259743 260524 . + . insertions 15 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 260525 260526 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 260525 260781 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 260780 260781 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 260782 260881 . + . KQ414889.1 exonerate:protein2genome:local exon 260782 260881 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 259743 260881 363 + . alignment_id 8 ; Query gi|861722533|gb|AKO90011.1| ; Align 259743 9 441 ; Align 260184 157 75 ; Align 260265 182 174 ; Align 260442 240 33 ; Align 260481 251 42 ; Align 260783 266 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722533|gb|AKO90011.1| odorant receptor 47 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 356 Query range: 112 -> 297 Target range: 304410 -> 305035 113 : GlnPheAsnSerAspTrpAlaGlnIleAsnAspIleLysAspLysThrIleMetValL : 132 .!..!!::!!!!! !::! !|||:!:.!...!:!!!:!|||::: !!!:|||:!!| AspLeuSerThrGlyTyrGluGlnValGluSerLeuArgAspArgGluMetMetLeuL 304411 : GATCTCTCTACTGGATATGAACAGGTGGAATCTCTCAGAGATCGTGAAATGATGCTAA : 304468 133 : ysTyrAlaArgPheGlyArgAsnSerSerIleIleCysAlaAlaPheMetTyrGlySe : 151 |||||!.!!:!.!.||||||||| !!!!|||||||||||| !||||||||| !.! ysTyrGlyGlnMetGlyArgAsnLeuThrIleIleCysAlaIlePheMetTyrThrGl 304469 : AATACGGGCAAATGGGTCGAAATCTGACGATAATCTGCGCCATATTTATGTATACCGG : 304525 152 : rCysMetPheTyrAlaCysIleLeuProHisValSerGlyValPheLysAsnLysAsn : 170 ! !!! .!!||| ! :!!:!!! ! !!.!!!!|||..!!:! !:!!:!! !! yGlyThrIleTyrHisThrValMetGlnPheAlaThrGlyThrTyrValAspGluTyr 304526 : CGGCACCATTTATCACACGGTCATGCAGTTCGCGACCGGAACGTATGTGGATGAGTAT : 304582 171 : AspProThrGluArgThrPheAlaTyrProCysHisPheIleValPheAsnGlnTyrG : 190 :!!! !||| !:! !!.!!!.!|||||| !:!! ! !:!!|||:!! ! AsnArgThrIleLysProLeuValTyrProThrTyrSerAlaLeuPheAspValGlnT 304583 : AATCGTACGATTAAACCGCTCGTCTATCCCACCTACAGTGCTTTATTTGACGTTCAAA : 304642 191 : luSerProAlaTyrGluIleValPheSerIleHisCysCysCysAlaPheValLeuAl : 209 !|||||| !||||||:!:|||!:!! !:!!|||||| |||!.!!:!|||:!! hrSerProIleTyrGluLeuValTyrPheValHisCysMetCysGlyTyrValIleTy 304643 : CAAGCCCTATTTACGAATTGGTTTACTTCGTTCATTGCATGTGCGGATACGTAATTTA : 304699 210 : aSerIleSerAsnAlaAlaCysAsnLeuIleThrValLeuIleThrHisAlaCysGly : 228 !||||||!!! !!.!||||||...||| !.!!:!!!!! !||||||||||||||| rSerIleThrAlaGlyAlaCysGlyLeuAlaAlaLeuPheAlaThrHisAlaCysGly 304700 : TTCTATAACCGCTGGTGCTTGCGGATTAGCCGCTCTTTTCGCTACACACGCTTGTGGA : 304756 229 : GlnLeuGluIleLeuMetValTrpLeuAsnAspLeuAspSerCysGlnGlnAsnGluV : 248 |||:!!!!:|||:!!||| ! ! |||..!||||||! !!:! !!:!!:!!:::...! GlnIleAspIleValMetSerArgLeuGlyAspLeuValAsnSerLysGluSerSerA 304757 : CAAATTGATATCGTTATGTCTCGATTGGGTGATCTTGTCAACAGCAAAGAATCATCTG : 304816 249 : alTyrAlaGluLysTyrSerLysIleIleLysGlnHisValLysThrIle{Ar} >> : 265 !! ! !:!!::!! ! !:!!|||:!!:!!!!.|||:!!::!! !:!!{||} spLeuAspLysArgLeuIleGluIleValGluHisHisLeuArgIleLeu{Ar}++ 304817 : ATTTAGATAAACGATTAATAGAAATTGTTGAGCATCATTTGCGAATTTTA{AG}gt.. : 304871 266 : >> Target Intron 1 >>>> {g}PheIleValLysIleGluAsnLeuPheGln : 275 70 bp {|}||| !.!! !:!::!!!..:!!!!.||| ++{g}PheSerAlaIleValGlnThrValLeuGln 304872 : .......................ag{A}TTCTCGGCAATAGTGCAAACAGTGTTGCAA : 304967 276 : GlnIleCysPheValGluValValGlyCysThrLeuIleIleCysLeuValGlyTyrT : 295 :!!:!!||||||:!!||| !!:!!|||! !||||||:!:|||||||||:!!! !|||| GluValCysPheLeuGluPheIleGlySerThrLeuLeuIleCysLeuLeuGluTyrT 304968 : GAAGTATGCTTCTTGGAATTCATTGGTTCTACCTTACTGATATGTCTACTTGAATACT : 305027 296 : yrValLeu : 297 || !:!! yrCysIle 305028 : ACTGTATA : 305035 vulgar: gi|861722533|gb|AKO90011.1| 112 297 . KQ414889.1 304410 305035 + 356 M 152 456 S 0 2 5 0 2 I 0 66 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 304411 305035 356 + . gene_id 9 ; sequence gi|861722533|gb|AKO90011.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 304411 304868 . + . KQ414889.1 exonerate:protein2genome:local exon 304411 304868 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 304869 304870 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 304869 304938 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 304937 304938 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 304939 305035 . + . KQ414889.1 exonerate:protein2genome:local exon 304939 305035 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 304411 305035 356 + . alignment_id 9 ; Query gi|861722533|gb|AKO90011.1| ; Align 304411 113 456 ; Align 304940 266 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722533|gb|AKO90011.1| odorant receptor 47 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 332 Query range: 16 -> 297 Target range: 274377 -> 275306 17 : SerLysTyrAlaLeuAspAlaAsnArgTrpIleLeuLysIleLeuGlyValTrpHisP : 36 ||| ! |||::!|||.!. !|||||||||.!!|||||| !:!!|||!.!|||! ! SerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProL 274378 : AGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGAAGCCTATAGGCGCGTGGCCGT : 274435 37 : heAlaIleAspSerSerTyrPheHisLysValIleAlaLeuCysHisIleIleIleCy : 55 !.||| !!!!!!! ! |||.!.::!:!!:!!:!!! ! |||...:::|| euAlaSerProThrThrLysPheGluArgIleLeuSerHisLeuLeuIlePheLeuCy 274436 : TAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTCACACCttttaatcttcctttg : 274492 56 : sThrPheLeuLeuSerPheValValIleProGlyIleLeuPheIlePheValIleVal : 74 | !! !!!!:!! !! !..!|||||||||.!!|||!!! !|||.!.:!!:!!! ! sTyrCysPheIleLeuSerThrValIleProSerIlePheHisIleIleLeuValAsp 274493 : ctACTGCTTCATACTCTCCACCGTTATCCCAAGCATATTTCACATCATACTAGTAGAT : 274549 75 : LysAspValThrThrArgLeuArgIleSerGlyValPheSerPheCysValMetGlyV : 94 :!!..!:!! ! !!:!|||!:!:!: !||| !.!!.!! !!! !!!!:|||! GluSerLeuHisLeuLysLeuLysLeuLeuGlyProLeuGlyHisTrpPheIleGlyG 274550 : GAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTCTCGGTCACTGGTTCATCGGAG : 274609 95 : alIleLysTyrTyrTyrLeuIleLysSerAsnLysGlnIleGlyAsnCysValLysGl : 113 !|||!!.||| ! |||:!: ! !!!:!|||:!!||| !!..!||||||:!!!! lyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHi 274610 : GAATTAATTACACCACGCTGTTGCTACGCAGCAAAGAGATACGCGGCTGCGTGGAGCA : 274666 114 : nPheAsnSerAspTrpAlaGlnIleAsnAspIleLysAspLysThrIleMetValLys : 132 ..!..!.!!!|||||| ! :!:!.! :!!|||:!! !:!:|||:!!||| sMetGlnThrAspTrpArgIleValThrArgProGluAspGlnGlnValMetLeuLys 274667 : CATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGATCAACAAGTGATGTTGAAG : 274723 133 : TyrAlaArgPheGlyArgAsnSerSerIleIleCysAlaAlaPheMetTyrGlySerC : 152 !!|||!:!.!!|||||| !! !:!!|||.!!||||||||||||||| ! !!.!! AsnAlaLysIleGlyArgTyrValAlaIlePheCysAlaAlaPheMetGlnCysGlyV 274724 : AACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTGCGGCGTTCATGCAATGCGGTG : 274783 153 : ysMetPheTyrAlaCysIleLeuProHisValSerGlyValPheLysAsnLysAsnAs : 171 !:!:! !|||..! ||| ! !! !..!! ! !..! !!:!! !|||!! alLeuCysTyrCysValIleThrAlaPheThrMetGlnThrValGlnValGlyAsnGl 274784 : TTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCAGACCGTTCAAGTAGGGAACGA : 274840 172 : pPro<->ThrGluArgThrPheAlaTyrProCysHisPheIleValPheAsnGlnTyr : 189 : !! |||! !!.!! !!!. !!! ! !..!:!! ! :!! !! ! !! uThrArgThrValHisMetLeuProCysLysAlaTyrLysLysIleValAlaValAsp 274841 : GACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTACAAGAAGATCGTCGCGGTGGAC : 274897 190 : GluSerProAlaTyrGluIleValPheSerIleHisCysCysCysAlaPheValLeuA : 209 !||||||.!! !!|||||||||.!!:!! !!.! ! ! !.!|||:!!:!! ThrSerProThrAsnGluIleValLeuAlaSerGlnPheValSerGlyPheIleValA 274898 : ACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAATTCGTGTCGGGATTTATCGTGA : 274957 210 : laSerIleSerAsnAlaAlaCysAsnLeuIleThrValLeuIleThrHisAlaCysGl : 228 !|||! !:!! !!.!|||! !!:!||| !.!!|||!!! .!!||||||! !|| snSerSerAlaValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaTyrGl 274958 : ATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGTGTTCGCGGCACACGCTTACGG : 275014 229 : yGlnLeuGluIleLeuMetValTrpLeuAsnAspLeu<-><->AspSerCysGlnGln : 245 |||||||...:!:||||||:!!|||:!!!.!!!:!!! !!||| ! .!.||| yGlnLeuSerValLeuMetIleTrpIleThrGluPheValAsnHisSerArgAspGln 275015 : CCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTTGTGAATCATTCCAGGGAtcag : 275071 246 : AsnGlu<->ValTyrAlaGluLysTyrSerLysIleIleLysGlnHisValLysThrI : 264 |||::: |||||| ...:!! !.!! !:!!:!!:!!!!.|||:!!!:!..!: AsnLysAsnValTyrPheSerGluIleGlyValValValGluHisHisLeuArgValL 275072 : aataaaaatgtttatttcagCGAGATCGGCGTGGTTGTCGAACATCATCTGAGGGTAC : 275131 265 : leArgPheIle{V} >>>> Target Intron 1 >>>> {al}LysIleGluAs : 272 !!||| !{!} 77 bp {.!}:::||||||:! euArg---***{A}++ ++{la}ArgIleGluAs 275132 : TCAGG---TAA{G}gt.........................ag{CA}CGTATCGAGGA : 275229 273 : nLeuPheGlnGlnIleCysPheValGluValValGlyCysThrLeuIleIleCysLeu : 291 !:!!.!..!.!:!|||||||||:!!|||:!! !! !||||||||| !!!:|||:!! pValMetAsnArgIleCysPheMetGluLeuPheLysCysThrLeuAspMetCysMet 275230 : TGTGATGAATCGAATATGCTTCATGGAATTGTTCAAGTGTACTCTGGATATGTGCATG : 275286 292 : ValGlyTyrTyrValLeu : 297 :!!|||||||||:!!||| LeuGlyTyrTyrIleLeu 275287 : CTTGGCTATTACATTCTC : 275306 vulgar: gi|861722533|gb|AKO90011.1| 16 297 . KQ414889.1 274377 275306 + 332 M 156 468 G 0 3 M 68 204 G 0 6 M 7 21 G 0 3 M 18 54 G 1 0 M 1 3 S 0 1 5 0 2 I 0 73 3 0 2 S 1 2 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274378 275306 332 + . gene_id 10 ; sequence gi|861722533|gb|AKO90011.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 274378 275140 . + . KQ414889.1 exonerate:protein2genome:local exon 274378 275140 . + . insertions 12 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 275141 275142 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 275141 275217 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 275216 275217 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 275218 275306 . + . KQ414889.1 exonerate:protein2genome:local exon 275218 275306 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274378 275306 332 + . alignment_id 10 ; Query gi|861722533|gb|AKO90011.1| ; Align 274378 17 468 ; Align 274849 173 204 ; Align 275059 241 21 ; Align 275083 248 54 ; Align 275137 267 3 ; Align 275220 269 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722533|gb|AKO90011.1| odorant receptor 47 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 329 Query range: 17 -> 240 Target range: 289732 -> 290401 18 : LysTyrAlaLeuAspAlaAsnArgTrpIleLeuLysIleLeuGlyValTrpHisPheA : 37 :::|||.!!!!!!!: ! !!.!|||||||||||| :!!|||:!!!::! !|||! ArgTyrThrPheGluLeuCysHisTrpIleLeuLysProIleGlyMetTyrProPheV 289733 : CGTTACACGTTCGAATTATGCCATTGGATCTTGAAACCGATAGGCATGTATCCTTTCG : 289790 38 : laIleAsp<->SerSerTyrPheHisLysValIleAlaLeuCysHisIleIleIleCy : 55 .!.!!..! :!!||| !.!.::!..! :!!:!!! ! |||:!::!!|| alPheSerArgAlaSerArgArgGluArgThrAlaSerValLeuLeuIleLeuValCy 289791 : TCTTTAGCCGTGCGAGCAGACGCGAACGAACGGCGTCGGTGTTGCTGATTCTGGTATG : 289847 56 : sThrPheLeuLeuSerPheValValIleProGlyIleLeuPheIlePheValIleVal : 74 | !! :!!|||..!|||:!!:!!:!!||| !! !! ! !:!!.!. !!! !! ! sCysSerIleLeuGlnPheIleIleValProPheSerHisHisValLeuPheSerAsp 289848 : TTGCTCGATCCTCCAGTTCATCATAGTACCGTTCAGTCATCACGTTCTATTCAGCGAC : 289904 75 : LysAspValThrThrArgLeuArgIleSerGlyValPheSerPheCysValMetGlyV : 94 !!.|||:!!!.!||| !:!!!:!! ! !||| !!!.!!!||||||:!!! ! AsnAspMetAsnThrPheValLysAsnLeuGlyProLeuThrPheCysLeuThrThrP 289905 : AACGACATGAACACGTTCGTTAAGAATCTCGGACCGTTGACGTTCTGTTTGACCACGT : 289964 95 : alIleLysTyrTyrTyrLeuIleLysSerAsnLysGlnIleGlyAsnCysValLysGl : 113 !!.!!||||||! !|||!!!! !! !!.!..!..! !||||||..!|||||||||!! hePheLysTyrCysTyrPheSerMetLysGlySerAlaIleGlyArgCysValLysHi 289965 : TCTTCAAGTATTGCTACTTCAGCATGAAAGGTTCAGCGATCGGTCGTTGCGTGAAACA : 290021 114 : nPheAsnSerAspTrpAlaGlnIleAsnAspIleLysAspLysThrIleMetValLys : 132 ..!!.!.!!!|||||| !..!:!:..!||| ! !!:::..!||||||:!!!:! sIleGluArgAspTrpLysMetLeuArgAspGluAspHisArgValIleMetLeuArg 290022 : CATCGAGAGAGACTGGAAGATGTTGCGTGACGAGGATCATCGTGTTATCATGCTCAGA : 290078 133 : TyrAlaArgPheGlyArgAsnSerSerIleIleCysAlaAlaPheMetTyrGlySerC : 152 |||!.!! !.!..!!|||||| !! !! !:!:|||||| !|||:!!||| !.!! TyrValThrMetSerArgAsnLeuIleLysLeuCysAlaIlePheLeuTyrIleGlyG 290079 : TACGTGACGATGAGCCGGAATCTCATAAAACTGTGCGCGATCTTCTTGTACATAGGTG : 290138 153 : ysMetPheTyrAlaCysIleLeuProHisValSerGlyValPheLysAsnLysAsnAs : 171 !!:!!! !||| ! !:!!:!!||| !!||| ! ! ! !||| ||| lyLeuSerTyrAsnThrValIleProLeuPheSerLysLysSerValAsnGlyAsn-- 290139 : GTCTGTCTTATAACACTGTCATACCGTTGTTCTCGAAGAAGAGCGTGAACGGTAAC-- : 290195 172 : pProThrGluArgThrPheAlaTyrProCysHisPheIleValPheAsnGlnTyrGlu : 190 !||| ||| !!.!..!!|||||| !!:!! !!|||:!! ! :!! -ValThrIleArgProLeuThrTyrProGlyTyrGluGluPhePheAspValGlnLys 290196 : -GTGACTATCAGACCTCTAACTTATCCCGGTTACGAGGAGTTCTTCGACGTTCAGAAG : 290249 191 : SerProAlaTyrGluIleValPheSerIleHisCysCysCysAlaPheValLeuAlaS : 210 ||||||||||||||||||||||||!!!!!:|||||| !! !!.!.!.:!! !|||! SerProAlaTyrGluIleValPheCysMetHisCysValTyrValMetIleThrAlaA 290250 : AGTCCAGCGTACGAGATCGTCTTCTGTATGCACTGTGTCTACGTCATGATCACGGCGA : 290309 211 : erIleSerAsnAlaAlaCysAsnLeuIleThrValLeuIleThrHisAlaCysGlyGl : 229 :!|||!!!! ||||||! !!:!|||! |||:!!!!! !||||||.!!|||||||| snIleThrMetAlaAlaTyrSerLeuThrThrIlePheAlaThrHisThrCysGlyGl 290310 : ACATCACAATGGCGGCGTACAGTTTGACGACGATCTTCGCCACTCATACTTGCGGTCA : 290366 230 : nLeuGluIleLeuMetValTrpLeuAsnAspLeu : 240 |:!!:!!|||! !! !..! !!|||.!.|||||| nIleLysIleGlnThrThrArgLeuGluAspLeu 290367 : GATTAAGATACAAACGACGCGGCTGGAGGATCTG : 290401 vulgar: gi|861722533|gb|AKO90011.1| 17 240 . KQ414889.1 289732 290401 + 329 M 22 66 G 0 3 M 131 393 G 1 0 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 289733 290401 329 + . gene_id 11 ; sequence gi|861722533|gb|AKO90011.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 289733 290401 . + . KQ414889.1 exonerate:protein2genome:local exon 289733 290401 . + . insertions 3 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 289733 290401 329 + . alignment_id 11 ; Query gi|861722533|gb|AKO90011.1| ; Align 289733 18 66 ; Align 289802 40 393 ; Align 290195 172 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722533|gb|AKO90011.1| odorant receptor 47 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 325 Query range: 23 -> 267 Target range: 212887 -> 213628 24 : AsnArgTrpIleLeuLysIleLeuGlyValTrpHisPheAlaIleAspSerSerTyrP : 43 |||||||||:!!|||||| ! !|||:!!|||! ! ! ! ! !! !||| . AsnArgTrpLeuLeuLysProThrGlyLeuTrpProAspLysSerTyrValSerProI 212888 : AATCGTTGGCTTTTGAAACCAACGGGTTTGTGGCCCGACAAGTCCTACGTTTCACCGA : 212945 44 : heHisLysValIleAlaLeuCysHisIleIleIleCysThrPheLeuLeuSerPheVa : 62 !!.!.||| !||||||! !! !! !! !:!!||| ! !|||:!!.!!!:!:! leGluLysAsnIleAlaArgLeuValAsnThrValCysTyrGlyLeuIleGlyTyrLe 212946 : TCGAGAAAAACATCGCTCGATTGGTCAATACTGTTTGTTACGGTTTGATCGGTTACCT : 213002 63 : lValIleProGlyIleLeuPheIlePheValIleValLysAspValThrThrArgLeu : 81 !||||||||| !!! !|||!:!:!:|||:!! !|||::::::::: ...:!! uValIleProCysSerLeuTyrValPheLeuAspValGluAsnIlePheLysGluIle 213003 : TGTAATACCGTGCAGTTTGTACGTGTTCCTCGACGTAgagaatatatttaaagagaTC : 213059 82 : ArgIleSerGlyValPheSerPheCysValMetGlyValIleLysTyrTyrTyrLeuI : 101 ..!:!:! !|||:!!|||:!!||||||||| !.!:!! ||||||:!!! |||| GluLeuPheGlyIlePheAlaPheCysValAlaAlaLeuTrpLysTyrHisSerLeuI 213060 : GAATTGTTCGGCATTTTTGCATTTTGCGTGGCTGCGCTGTGGAAGTATCATTCGTTGA : 213119 102 : leLysSerAsnLysGlnIleGlyAsnCysValLysGlnPheAsnSerAspTrpAlaGl : 120 || !..! ! .!.||| !!!..||||||:!!!!..!.!!.! !|||||| !.! leLeuHisGlyAspAspIleArgThrCysValGluHisMetLysTyrAspTrpLysAs 213120 : TACTTCACGGTGACGATATTCGTACGTGTGTCGAGCATATGAAATATGACTGGAAGAA : 213176 121 : nIleAsnAspIleLysAspLysThrIleMetValLysTyrAlaArgPheGlyArgAsn : 139 .|||!.. !! :!!|||||| !||||||!.! ! !!|||!!!||||||!:!!.. nIleThrHisGluGluAspLysGluIleMetAlaLeuAsnAlaSerPheGlyLysArg 213177 : TATCACGCACGAGGAGGACAAAGAAATTATGGCGTTGAACGCGAGCTTTGGAAAGAGG : 213233 140 : SerSerIleIleCysAlaAlaPheMetTyrGlySerCysMetPheTyrAlaCysIleL : 159 ! ! !! !||||||||| !||||||||| !.!!! !! !|||||| ! !:!!: IleValThrIleCysAlaPhePheMetTyrThrGlyPheThrPheTyrPheLeuValV 213234 : ATAGTGACAATTTGTGCTTTCTTCATGTACACAGGTTTCACGTTTTATTTCCTCGTCG : 213293 160 : euPro<->HisValSerGlyValPheLysAsnLysAsnAspProThrGluArgThrPh : 177 !!||| !!.!..! !:!! ! !.!. ! !:!! !||| ||| !.! alProIleSerAlaAspLysMetValAlaGluAspLeuAsnValThrPheArgGlnMe 213294 : TACCGATCAGCGCGGATAAAATGGTAGCGGAGGATCTTAACGTGACATTCAGACAAAT : 213350 178 : eAlaTyrProCysHisPheIleValPheAsnGlnTyrGluSerProAlaTyrGluIle : 196 .!.! !||| ! .!!:!! !!:!! ! ||||||!.! !!|||||| tValValProValSerArgPheIleValAspValArgTyrSerProValAsnGluIle 213351 : GGTGGTCCCTGTCTCGAGATTTATCGTCGATGTTCGATACAGTCCTGTGAACGAGATA : 213407 197 : ValPheSerIleHisCysCysCysAlaPheValLeuAlaSerIleSerAsnAlaAlaC : 216 !!|||! !|||!!. ! ..!!.! ! :!!:!! !:!!|||:!! !.!|||| PhePheLeuIleGlnIleIleAlaGlyValLeuIleHisAlaIleAlaValValAlaC 213408 : TTCTTCTTGATTCAGATTATAGCTGGAGTACTGATTCATGCTATTGCGGTGGTAGCTT : 213467 217 : ysAsnLeuIleThrValLeuIleThrHisAlaCysGlyGlnLeuGluIleLeuMetVa : 235 ||!:!||| !.!!|||!!! ..!|||||||||||||||:!!! ||||||||| ysSerLeuAlaAlaValPheAlaValHisAlaCysGlyGlnMetGlyIleLeuMetSe 213468 : GTAGCTTGGCAGCTGTGTTTGCGGTTCACGCTTGCGGACAGATGGGCATTTTGATGAG : 213524 236 : lTrpLeuAsnAspLeuAspSerCysGlnGln<-><->AsnGluValTyrAlaGluLys : 252 !||||||.!. !!||| ..! !!::!:!! !:!:!! ! ! !!!:!:! rTrpLeuGluHisLeuIleAspGlyArgGluAspMetSerLysAsnValAspAspArg 213525 : CTGGCTGGAACATTTGATAGACGGTAGAGAGGATATGAGCAAGAATGTGGACGACAGA : 213581 253 : TyrSerLysIleIleLysGlnHisValLysThrIleArgPheIle : 267 !:!! |||:!:!!.|||||||||::!! !:!:!:!!:::!: IleAlaValIleValAsnGlnHisValArgIleLeuLysTrpVal 213582 : ATCGCGGTCATCGTGAACCAGCATGTGCGGATACTGAAGTGGGTG : 213628 vulgar: gi|861722533|gb|AKO90011.1| 23 267 . KQ414889.1 212887 213628 + 325 M 137 411 G 0 3 M 85 255 G 0 6 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 212888 213628 325 + . gene_id 12 ; sequence gi|861722533|gb|AKO90011.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 212888 213628 . + . KQ414889.1 exonerate:protein2genome:local exon 212888 213628 . + . insertions 9 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 212888 213628 325 + . alignment_id 12 ; Query gi|861722533|gb|AKO90011.1| ; Align 212888 24 411 ; Align 213302 161 255 ; Align 213563 246 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722533|gb|AKO90011.1| odorant receptor 47 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 320 Query range: 16 -> 297 Target range: 256646 -> 257577 17 : SerLysTyrAlaLeuAspAlaAsnArgTrpIleLeuLysIleLeuGlyValTrpHisP : 36 ||| ! |||::!|||.!. !|||||||||.!!|||||| !:!!|||!.!|||! SerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProP 256647 : AGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGAAACCTATAGGCGCATGGCCAC : 256704 37 : heAlaIleAspSerSerTyrPheHisLysValIleAlaLeuCysHisIleIleIleCy : 55 !:!! ..!!!!!!! !.!!.!.::! !:!!:!!:!! ! ! !|||:!!|| roSerSerSerThrThrThrLeuGluArgAsnValSerIleValLeuAsnIleValCy 256705 : CCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTCGATCGTTTTGAACATCGTCTG : 256761 56 : sThrPheLeuLeuSerPheValValIleProGlyIleLeuPheIlePheValIleVal : 74 | ! !! !:!!! !|||..!:!!|||||| !!:!:||| !:!!|||:!! !! ! sTyrGlySerIleLeuPheThrLeuIleProCysLeuLeuHisValPheLeuAspAsp 256762 : CTATGGTTCTATATTGTTCACCTTGATACCCTGTTTGCTCCATGTATTTCTTGACGAC : 256818 75 : LysAspValThrThrArgLeuArgIleSerGlyValPheSerPheCysValMetGlyV : 94 ! ..! !! ::::::::: ||| !.!.||| !!! :!!!!:.!! AspSerPheTyrMetLysValLysAsnPheGlyProMetSerHisTrpIleIleSerC 256819 : GACAGTTTCTAcatgaaagtgaaaaatttcggtCCTATGAGCCATTGGATCATCAGCT : 256878 95 : alIleLysTyrTyrTyrLeuIleLysSerAsnLysGlnIleGlyAsnCysValLysGl : 113 ! !!!.||| ! |||:!: !..!...|||.!.||| !! !!||||||:!!!! ysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAspIleArgTyrCysValGluHi 256879 : GTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGACATACGCTACTGCGTCGAGCA : 256935 114 : nPheAsnSerAspTrpAlaGlnIleAsnAspIleLysAspLysThrIleMetValLys : 132 ..!..!.!!!|||||| !..!:!:!.. ||||||:!! !:!:|||:!!||| sIleGluThrAspTrpArgMetValArgArgGluLysAspGlnGlnValMetMetLys 256936 : TATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAGGATCAACAAGTGATGATGAAG : 256992 133 : TyrAlaArgPheGlyArgAsnSerSerIleIleCysAlaAlaPheMetTyr<->GlyS : 151 !!||||||||||||||| !! !:!!! !.!!|||||||||.!!||| ! ||| AsnAlaArgPheGlyArgTyrValAlaThrPheCysAlaAlaIleMetGlnSerGlyV 256993 : AACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCGCAGCTATCATGCAAAGCGGCg : 257052 152 : erCysMetPheTyrAlaCysIleLeuProHisValSerGlyValPheLysAsnLysAs : 170 |||:::..!! !! !:!!..!..! !:!! ! !...!!..! alPheCysPhePheValSerSerAlaLeuAsnThrGluIleIleHisValGlyAsnGl 257053 : ttttctgtttcttcgtGTCGTCGGCGCTGAACACGGAGATAATTCACGTGGGAAACGA : 257109 171 : nAspProThrGluArgThrPheAlaTyrProCysHisPheIleValPheAsnGlnTyr : 189 . !!! !! !|||..!.!. !! ! !! :!! ! :!!!!.||| !! uThrThrIleValArgValLeuProValThrValTyrLysLysLeuLeuAsnValAsp 257110 : AACAACGATCGTGCGAGTGCTACCTGTTACCGTGTACAAGAAGCTGTTGAACGTCGAT : 257166 190 : GluSerProAlaTyrGluIleValPheSerIleHisCysCysCysAlaPheValLeuA : 209 :!!||||||.!! !!||||||||| !!! !!!:!!. !!! ! :!!.!!:!! !. GlnSerProThrAsnGluIleValValPheMetGlnThrTrpSerSerIleIleAlaT 257167 : CAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAACTTGGTCGTCGATTATAGCGA : 257226 210 : laSerIleSerAsnAlaAlaCysAsnLeuIleThrValLeuIleThrHisAlaCysGl : 228 !!!!!! !!!! !::! !! !!:!||| .!!|||!!! !|||||||||! !|| hrThrSerThrValSerIlePheSerLeuAlaAlaValPheAlaThrHisAlaTyrGl 257227 : CTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGTTTTTGCCACTCATGCGTACGG : 257283 229 : yGlnLeuGluIleLeuMetValTrpLeuAsnAspLeuAspSerCysGlnGlnAsnGlu : 247 ||||||| :!:|||||| !|||:!!!..!!:!!!! !:! ..!::!|||... yGlnLeuThrValLeuMetSerTrpIleThrGluPheValAsnGluSerArgAsnArg 257284 : TCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTTGTGAATGAGTCGAGGAATCGg : 257340 248 : ValTyrAlaGluLysTyrSerLys<-><-><->IleIleLysGlnHisValLysThrI : 264 ... ::!!.!:!! |||:!::!!!!.|||:!!!:!..!: GluLysThrPheProPheLysGlnIleGlyValIleValGluHisHisLeuArgValL 257341 : gagaaaacgtttcctttCAAGCAAATAGGCGTGATTGTGGAGCATCATTTAAGAGTGC : 257400 265 : le{Ar} >>>> Target Intron 1 >>>> {g}PheIleValLysIleGluAs : 272 !:{!!} 76 bp {!}|||||| ! ! ||||||.! eu{Se}++ ++{r}PheIleSerTyrIleGluGl 257401 : TG{AG}gt.........................ag{T}TTCATATCATATATCGAGGA : 257500 273 : nLeuPheGlnGlnIleCysPheValGluValValGlyCysThrLeuIleIleCysLeu : 291 .:!!.!..!.!:!|||||||||:!!|||:!! !! !!||||||||| !||||||:!! uValMetAsnArgIleCysPheLeuGluLeuPheArgCysThrLeuAlaIleCysMet 257501 : AGTGATGAACCGAATATGTTTTTTAGAGTTGTTTAGATGCACGCTGGCTATATGCATG : 257557 292 : ValGlyTyrTyrValLeu : 297 :!!|||||||||:!!||| LeuGlyTyrTyrIleLeu 257558 : CTGGGATACTACATTCTT : 257577 vulgar: gi|861722533|gb|AKO90011.1| 16 297 . KQ414889.1 256646 257577 + 320 M 133 399 G 0 3 M 106 318 G 0 9 M 9 27 S 0 2 5 0 2 I 0 72 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256647 257577 320 + . gene_id 13 ; sequence gi|861722533|gb|AKO90011.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 256647 257404 . + . KQ414889.1 exonerate:protein2genome:local exon 256647 257404 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 257405 257406 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 257405 257480 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 257479 257480 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 257481 257577 . + . KQ414889.1 exonerate:protein2genome:local exon 257481 257577 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256647 257577 320 + . alignment_id 13 ; Query gi|861722533|gb|AKO90011.1| ; Align 256647 17 399 ; Align 257049 150 318 ; Align 257376 256 27 ; Align 257482 266 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722533|gb|AKO90011.1| odorant receptor 47 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 305 Query range: 17 -> 297 Target range: 232456 -> 234620 18 : LysTyrAlaLeuAspAlaAsnArgTrpIleLeuLysIleLeuGlyValTrpHisPheA : 37 :!!|||::!:!!.!.!.!|||||||||.!!|||! ! :!!|||!.!|||! !! GluTyrSerIleGlnValAsnArgTrpPheLeuThrProMetGlyAlaTrpProArgV 232457 : GAGTACAGCATCCAGGTGAACCGTTGGTTTCTGACACCGATGGGCGCATGGCCGCGTG : 232514 38 : laIleAspSerSerTyrPheHisLysValIleAlaLeuCysHisIleIleIleCysTh : 56 .!! !!!:!!!||| !!!.:!!:!!:!!||| ! ! !:!!! !||| alThrGluThrSerArgAlaGlnGlnLeuLeuAlaLysLeuLeuArgLeuThrCysHi 232515 : TTACAGAGACCTCGAGAGCCCAGCAACTACTCGCGAAACTGTTGAGACTCACCTGTCA : 232571 57 : rPheLeuLeuSerPheValValIleProGlyIleLeuPheIlePheValIleValLys : 75 !! !|||:!!! !! ! !:!!:!!||| !!||||||||||||.!. !! !! !! ! sSerLeuMetIleSerSerIleValProCysIleLeuPheIleLeuPheGluAspThr 232572 : TTCTCTGATGATCTCCTCGATCGTACCGTGCATTCTGTTCATCCTGTTCGAAGACACG : 232628 76 : AspValThrThrArgLeuArgIleSerGlyValPheSerPheCysValMetGlyValI : 95 ..!:!! ! !|||:!!!:! !! !||| !.!.||| !! !:!!||||||! !: SerLeuGluGluArgMetLysSerIleGlyProMetSerHisPheLeuMetGlyGluL 232629 : AGCCTAGAGGAAAGGATGAAGTCTATCGGTCCTATGAGTCACTTTCTGATGGGTGAAT : 232688 96 : leLysTyrTyrTyrLeuIleLysSerAsnLysGlnIleGlyAsnCysValLysGlnPh : 114 !:!!.|||! !! !|||:!: !!.! !!..!.||| ! !!||||||:!!||| ! euAsnTyrCysCysLeuLeuAlaLysAlaAsnAspIleLeuTyrCysValGluGlnVa 232689 : TGAATTATTGCTGCTTGTTGGCAAAGGCGAACGACATCCTCTATTGCGTGGAACAGGT : 232745 115 : eAsnSerAspTrpAlaGlnIleAsnAspIleLysAspLysThrIleMetValLysTyr : 133 !!...!|||||| !.!.:!!!!. ! ! !!::: !:!:|||:!!||| !! lLysGlnAspTrpArgAsnValLysLysProValHisArgAspLeuMetLeuLysAsn 232746 : GAAACAGGACTGGCGAAACGTTAAGAAACCCGTCCATCGTGATCTGATGTTGAAGAAC : 232802 134 : AlaArgPheGlyArgAsnSerSerIleIleCysAlaAlaPheMetTyrGlySerCysM : 153 |||!:!.!!||||||:::! !:!! !|||..!||| !! !|||:!! !.!! ! AlaLysLeuGlyArgSerIleAlaCysIleAlaAlaPheCysMetHisThrGlyValG 232803 : GCGAAACTTGGACGTTCGATAGCTTGCATCGCTGCGTTTTGCATGCACACCGGTGTCG : 232862 154 : etPheTyrAlaCysIleLeuProHisValSerGlyValPheLysAsnLysAsnAspPr : 172 ! ! !!! ! :!! ! !! ! !! !.!!..!||| ! !|||!!: lySerAspGluIleValThrGlyLeuArgMetSerThrPheTyrValGlyAsnGlu-- 232863 : GCTCCGACGAAATAGTCACAGGACTTCGTATGAGCACGTTCTACGTGGGGAACGAG-- : 232919 173 : oThrGluArgThrPheAlaTyrProCysHisPheIle<-><->ValPheAsnGlnTyr : 189 !:! ! !! !!:! !!! |||||| ||| ! :!!.!.:!! -SerTyrSerMetTyrProLeuProCysThrPheTyrThrLysLeuMetAspThrArg 232920 : -AGTTACTCGATGTACCCGTTACCTTGCACGTTCTACACGAAGCTGATGGACACCAGA : 232973 190 : GluSerProAlaTyrGluIleValPheSerIleHisCysCysCysAlaPheValLeuA : 209 ||||||.!! !!||||||:!!||| !:!!!!.||| !! !!.!|||:!!:!! PheSerProThrAsnGluIleMetPheValLeuGlnCysLeuSerGlyPheIleValA 232974 : TTCAGTCCGACGAACGAGATAATGTTCGTTCTACAGTGTCTCTCCGGGTTCATCGTGA : 233033 210 : laSerIleSerAsnAlaAlaCysAsnLeuIleThrValLeuIleThrHisAlaCysGl : 228 !|||:!!!!! !.!||||||..!||| !.!!|||||| ! !||||||||||| snSerValThrValGlyAlaCysGlyLeuGlyAlaValLeuAlaMetHisAlaCysGl 233034 : ACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGCTGTTCTAGCGATGCACGCGTGCGG : 233090 229 : yGlnLeuGluIleLeuMetValTrpLeuAsnAspLeuAspSerCysGlnGlnAsnGlu : 247 |||||||.!.:!::!!||| ! |||:!!||||||! ..!...:!! !.!.||| yGlnLeuAsnValValMetSerLysLeuAspAspLeuValAspAlaLysGlyGlnGlu 233091 : ACAGCTGAACGTGGTGATGTCGAAATTGGACGATTTGGTGGACGCGAAAGGGCAGGAG : 233147 248 : >>>> Target Intron 1 >>>> ValTyrAlaGluLysTyrSerLysIleIl : 257 1321 bp ||||||:!! ! ! ! ! ! +- -+LysTyrAlaLysTrpGlnValTyrGlyTy 233148 : ga.........................cgaaatatgcAAAGTGGCAAGTTTACGGCTA : 234498 258 : eLysGlnHisValLysThrIleArgPheIleValLysIleGluAsnLeuPheGlnGln : 276 ! !!!. ! |||.!!!!!|||||| !!!.|||||||||:!!.!..!.! ! rLeuHisGlyAsnValThrPheSerPheIleArgAsnIleGluAsnValMetAsnLeu 234499 : TCTACATGGAAATGTTACTTTCAGTTTTATACGGAATATAGAGAACGTTATGAACCTA : 234555 277 : IleCysPheValGluValValGlyCysThrLeuIleIleCysLeuValGlyTyrTyrV : 296 ||||||.!.||||||:!!|||||||||||||||! !!!:|||:!!:!!! !||||||: IleCysLeuValGluLeuValGlyCysThrLeuAsnMetCysMetLeuGluTyrTyrL 234556 : ATATGCCTGGTTGAGTTGGTAGGATGCACGTTGAACATGTGCATGCTCGAGTATTATT : 234615 297 : alLeu : 297 !!||| euLeu 234616 : TACTC : 234620 vulgar: gi|861722533|gb|AKO90011.1| 17 297 . KQ414889.1 232456 234620 + 305 M 154 462 G 1 0 M 12 36 G 0 6 M 63 189 5 0 2 I 0 1317 3 0 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232457 234620 305 + . gene_id 14 ; sequence gi|861722533|gb|AKO90011.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232457 233149 . + . KQ414889.1 exonerate:protein2genome:local exon 232457 233149 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local splice5 233150 233151 . + . intron_id 1 ; splice_site "GA" KQ414889.1 exonerate:protein2genome:local intron 233150 234470 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234469 234470 . + . intron_id 0 ; splice_site "cg" KQ414889.1 exonerate:protein2genome:local cds 234471 234620 . + . KQ414889.1 exonerate:protein2genome:local exon 234471 234620 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232457 234620 305 + . alignment_id 14 ; Query gi|861722533|gb|AKO90011.1| ; Align 232457 18 462 ; Align 232919 173 36 ; Align 232961 185 189 ; Align 234471 248 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722533|gb|AKO90011.1| odorant receptor 47 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 305 Query range: 167 -> 400 Target range: 300180 -> 302154 168 : AsnLysAsnAspProThrGluArgThrPheAlaTyrProCysHisPheIleValPheA : 187 !!.!:!.!.:!! !||| ! !:! !!!!.||||||||| !!:!! ! !!.!!: LysArgGluAsnTyrThrTyrLysProLeuAlaTyrProGlyTyrAspTrpPheIleA 300181 : AAAAGGGAGAATTACACTTACAAACCGTTAGCCTATCCTGGCTACGATTGGTTTATCG : 300238 188 : snGlnTyrGluSerProAlaTyrGluIleValPheSerIleHisCysCysCysAlaPh : 206 !! ! ! ||||||.!!||||||||||||||| ...|||||| !...|||.! spThrGlnThrSerProThrTyrGluIleValPhePhePheHisCysPheAlaAlaMe 300239 : ATACACAAACCAGTCCTACCTACGAgatcgtatttttctttcactgttTCGCAGCGAT : 300295 207 : eValLeuAlaSerIleSerAsnAlaAlaCysAsnLeuIleThrValLeuIleThrHis : 225 .:!!:!! !!:!:!:!!!!..||||||! !!:!||| .!!:!!!!!:!!|||||| tIleMetTyrAsnValThrThrAlaAlaTyrSerLeuAlaAlaIlePheValThrHis 300296 : GATCATGTACAACGTGACAACGGCAGCGTACAGTTTGGCGGCGATATTCGTCACTCAT : 300352 226 : AlaCysGlyGlnLeuGluIleLeuMetValTrpLeuAsnAspLeu<->AspSerCysG : 244 !|||||||||:!!:!!|||! !|||!.! ! |||.!.|||||| !!:!!! IleCysGlyGlnIleGlnIleGlnMetAlaArgLeuGluAspLeuValGluArgThrG 300353 : ATCTGTGGACAGATTCAGATACAGATGGCGAGATTGGAGGATCTGGTGGAGAGGACGG : 300412 245 : lnGlnAsnGluValTyrAlaGluLysTyrSerLysIleIleLysGlnHisValLysTh : 263 !:!!!!.!!:! ! ! !!!!: ! ! |||:!!::!.!.|||||||||.. lyGluLysAspAspGlyProAspProLeuValValIleValArgAspHisValLysVa 300413 : GAGAGAAGGACGACGGTCCTGATCCTTTGGTCGTTATCGTTCGAGATCACGTGAAGGT : 300469 264 : rIle{Ar} >>>> Target Intron 1 >>>> {g}PheIleValLysIleGlu : 271 !:!!{||} 140 bp {|}||| ! !!!.:!!||| lLeu{Ar}++ ++{g}PheAlaLysAsnValGlu 300470 : TTTA{AG}gt.........................ag{A}TTTGCAAAGAACGTTGAG : 300633 272 : AsnLeuPheGlnGlnIleCysPheValGluValValGlyCysThrLeuIleIleCysL : 291 .!. !!!.!::.!..!!|||!!.||||||:!! !!! !! !|||||||||:!:|||| GluThrLeuArgAspPheCysLeuValGluIlePheGluSerThrLeuIleLeuCysL 300634 : GAAACTTTGCGTGACTTCTGCTTAGTGGAAATCTTCGAGTCCACGCTGATTTTGTGTT : 300693 292 : euValGlyTyrTyrValLeu >>>> Target Intron 2 >>>> LeuAspTrp : 300 ||:!!! !|||||| !||| 1050 bp :!! euLeuGluTyrTyrCysLeu++ +-IleLeuLeu 300694 : TGCTCGAATACTACTGTTTGgt.........................atATTCTGCTA : 301770 301 : AsnGlnLysAspThrGlyGlyMetThrThrTyrValMetLeuLeuIleSerPheValT : 320 :!!!:!::!|||:!! ! !!! !||||||:!!..!! ! ... |||:::: HisArgArgAspSerPheArgThrGlyThrTyrLeuGln***LysPheProPheLeuP 301771 : CATCGGCGAGATTCTTTCCGAACAGGTACTTACTTACAGTAGAagtttccatttcttt : 301830 321 : yrAsnIlePheLeuTyrCysTyrValCysGluLeuLeuThrAlaLysCysLysLeuIl : 339 ::|||:!!|||! ! ! !! ! !! :!! ! !! ! !!|||!..! !|| heAsnValPheProArgTyrLeuSerSerPheIleGlyArgAsp***CysSerGlnIl 301831 : tcaatGTATTTCCACGGTATTTAAGCAGCTTTATTGGTCGTGATTAGTGTAGCCAAAT : 301887 340 : eSerGluSerThrTyrLeuThrArgTrpTyrGlnIleProGluAsnPheAlaArgGly : 358 |.!!..!:!!:!!||| !! ! !||||||.!.:!!|||! !!!. ||| !! ! eGlySerAlaSerTyrGluIleAspTrpTyrAsnLeuProAlaLysArgAlaTyrAsp 301888 : TGGTTCAGCATCGTACGAGATCGATTGGTACAATTTACCAGCGAAGAGAGCATACGAT : 301944 359 : LeuValLeuThrIleAlaIleSerGlnAsnSerAsnProIleLysAlaGlyLysLeuI : 378 |||:!!||| !! !!.!||||||||| !! !! !:!!! !|||||||||:!!| LeuIleLeuLeuSerValIleSerGlnTyrProProLysLeuThrAlaGlyLysIleI 301945 : CTTATTCTACTTAGCGTGATATCGCAGTATCCGCCGAAACTTACAGCAGGGAAAATAA : 302004 379 : leProLeuSerIleAsnThrPheGlyThr >>>> Target Intron 3 >>>> : 388 || !||||||:!:|||||||||.!!:!! 82 bp leAspLeuSerLeuAsnThrPheSerSer++ ++ 302005 : TCGACTTATCCTTGAATACATTCAGCTCTgt.........................ag : 302114 389 : ValMetArgThrSerValValTyrLeuAsnPheLeuArg : 400 |||:!!!:!|||||||||||||||||||||!!.|||||| ValValLysThrSerValValTyrLeuAsnLeuLeuArg 302115 : GTGGTGAAAACATCGGTGGTGTACTTGAATTTACTGCGA : 302154 vulgar: gi|861722533|gb|AKO90011.1| 167 400 . KQ414889.1 300180 302154 + 305 M 73 219 G 0 3 M 24 72 S 0 2 5 0 2 I 0 136 3 0 2 S 1 1 M 32 96 5 0 2 I 0 1046 3 0 2 M 90 270 5 0 2 I 0 78 3 0 2 M 13 39 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 300181 302154 305 + . gene_id 15 ; sequence gi|861722533|gb|AKO90011.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 300181 300476 . + . KQ414889.1 exonerate:protein2genome:local exon 300181 300476 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300477 300478 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300477 300616 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 300615 300616 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 300617 300713 . + . KQ414889.1 exonerate:protein2genome:local exon 300617 300713 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 300714 300715 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 300714 301763 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 301762 301763 . + . intron_id 1 ; splice_site "AT" KQ414889.1 exonerate:protein2genome:local cds 301764 302033 . + . KQ414889.1 exonerate:protein2genome:local exon 301764 302033 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 302034 302035 . + . intron_id 3 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 302034 302115 . + . intron_id 3 KQ414889.1 exonerate:protein2genome:local splice3 302114 302115 . + . intron_id 2 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 302116 302154 . + . KQ414889.1 exonerate:protein2genome:local exon 302116 302154 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 300181 302154 305 + . alignment_id 15 ; Query gi|861722533|gb|AKO90011.1| ; Align 300181 168 219 ; Align 300403 241 72 ; Align 300618 266 96 ; Align 301764 298 270 ; Align 302116 388 39 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722533|gb|AKO90011.1| odorant receptor 47 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 303 Query range: 17 -> 240 Target range: 204233 -> 204899 18 : LysTyrAlaLeuAspAlaAsnArgTrpIleLeuLysIleLeuGlyValTrpHisPheA : 37 !:!|||||| ! ! ! !:! !|||||| !|||:!!|||!.!|||! .!! ArgTyrAlaThrArgPheValLysProIleLeuGlyIleValGlyAlaTrpProIleP 204234 : AGATACGCGACACGTTTCGTGAAGCCGATTTTAGGGATAGTCGGTGCGTGGCCGATTC : 204291 38 : laIleAspSerSerTyrPheHisLysValIleAlaLeuCysHisIleIleIleCysTh : 56 !!:!::!!|||||| ||| !:!:!!:!! !! ! .!. !:!!:!! ! roValAsnSerSerProPheThrArgLeuValArgArgIleGluHisValValThrTy 204292 : CAGTGAACTCCTCTCCGTTCACGAGGCTAGTACGGCGAATAGAACACGTAGTCACCta : 204348 57 : rPheLeuLeuSerPheValValIleProGlyIleLeuPheIlePheValIleValLys : 75 ||||||... ...:!!:!!:!!||||||:!!|||!:!:!:|||:!!! ! !||| rPheLeuPhePheLeuMetIleValProGlyLeuLeuTyrValPheLeuLysGluLys 204349 : tttcctcttctttctgaTGATCGTACCTGGCCTCTTGTACGTGTTCCTGAAGGAGAAG : 204405 76 : AspValThrThrArgLeuArgIleSerGlyValPheSerPheCysValMetGlyValI : 95 :!!! !! !! !||||||!:!||| !||| !.!! ! !||| !!!: ! !!. AsnGlyLysIleArgLeuLysIleLeuGlyProIleValAsnCysSerIleGlnPheP 204406 : AACGGCAAAATTCGCCTGAAGATTCTCGGGCCGATCGTGAACTGCAGCATACAGTTCT : 204465 96 : leLysTyrTyrTyrLeuIleLysSerAsnLysGlnIleGlyAsnCysValLysGlnPh : 114 !!||||||! ! !:!!:!! ! !!! ! ! :!!||| !!!. !!:!!!!. .! heLysTyrSerValIleLeuTyrArgIleAspLysIleGlnLysSerLeuAsnThrIl 204466 : TCAAGTACTCCGTCATTCTCTACCGGATCGACAAAATTCAGAAGAGTTTGAACACCAT : 204522 115 : eAsnSerAspTrpAlaGlnIleAsnAspIleLysAspLysThrIleMetValLysTyr : 133 !!.. !!|||||| !:!! !!..||| :!!:!!::! !|||.!. !..! ! eArgArgAspTrpIleGluAlaThrAsp---GluAsnArgLeuIlePheArgSerLys 204523 : CAGACGCGACTGGATAGAGGCTACGGAT---GAAAATCGGTTGATTTTCCGCTCGAAA : 204576 134 : AlaArgPheGlyArgAsnSerSerIleIleCysAlaAlaPheMetTyrGlySerCysM : 153 |||!:!.!!||||||!.. !! !:!:|||...|||||| !|||||||||.!! !!: AlaLysIleGlyArgArgValLeuLeuIleAlaAlaAlaThrMetTyrGlyGlyGlyL 204577 : GCGAAGATCGGGCGAAGAGTGTTGCTGATTGCAGCCGCCACTATGTACGGCGGTGGTT : 204636 154 : etPheTyrAlaCysIleLeuProHisValSerGlyValPheLysAsnLysAsnAspPr : 172 !!! !||| ! ||||||||| :!!!!!|||..!.!! !!.. :!!:!! euCysTyrArgThrIleLeuProLeuLeuArgGlyThrIleValThrProAspAsnVa 204637 : TGTGTTACAGGACGATTCTTCCTTTGTTGAGAGGAACGATCGTAACACCTGATAACGT : 204693 173 : oThrGluArgThrPheAlaTyrProCysHisPheIleValPheAsnGlnTyrGluSer : 191 !||| !||| !!!!. !!! !||| !:::|||::: ||||||:!! ! ...||| lThrIleArgProLeuProCysProValTyrPheValPhePheAsnGluGlnArgSer 204694 : TACCATAAGGCCGTTGCCGTGTCCGGTTtactttgttttctttaacGAGCAACGTTCG : 204750 192 : ProAlaTyrGluIleValPheSerIleHisCysCysCysAlaPheValLeuAlaSerI : 211 ||| !|||||||||||||||! !:!:!!. ! ..!!.!|||||| ! !:!!: ProAsnTyrGluIleValPheIleLeuGlnIleMetAlaGlyPheValThrTyrAlaV 204751 : CCGAATTACGAGATTGTTTTTATACTGCAAATTATGGCTGGTTTTGTTACTTACGCTG : 204810 212 : leSerAsnAlaAlaCysAsnLeuIleThrValLeuIleThrHisAlaCysGlyGlnLe : 230 !!! !!:!!.!.!!|||..!:!! !.!!:!!!!!:!! !|||||||||.!!..!|| alIleSerGlyThrCysGlyMetCysAlaLeuPheValLeuHisAlaCysSerMetLe 204811 : TTATCAGCGGCACATGCGGTATGTGCGCGCTGTTCGTTCTCCACGCGTGCAGCATGCT : 204867 231 : uGluIleLeuMetValTrpLeuAsnAspLeu : 240 |..!||||||:!! ! !:!!|||! ||| uArgIleLeuValAsnLysMetAsnAlaLeu 204868 : GAGGATTTTGGTGAACAAGATGAACGCACTT : 204899 vulgar: gi|861722533|gb|AKO90011.1| 17 240 . KQ414889.1 204233 204899 + 303 M 106 318 G 1 0 M 116 348 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 204234 204899 303 + . gene_id 16 ; sequence gi|861722533|gb|AKO90011.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 204234 204899 . + . KQ414889.1 exonerate:protein2genome:local exon 204234 204899 . + . insertions 0 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 204234 204899 303 + . alignment_id 16 ; Query gi|861722533|gb|AKO90011.1| ; Align 204234 18 318 ; Align 204552 125 348 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722533|gb|AKO90011.1| odorant receptor 47 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 279 Query range: 16 -> 239 Target range: 266631 -> 267303 17 : SerLysTyrAlaLeuAspAlaAsnArgTrpIleLeuLysIleLeuGlyValTrpHisP : 36 ||| ! |||::!|||.!. !|||||||||.!!|||||| !:!!|||!.!|||! SerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuLysProIleGlyAlaTrpProP 266632 : AGCGATTACAGCCTGCAATTGAATCGATGGTTCCTGAAACCTATAGGCGCTTGGCCGC : 266689 37 : heAlaIleAspSerSerTyrPheHisLysValIleAlaLeuCysHisIleIleIleCy : 55 ! ! !!!!||| ! .!!.!.::!:!!:!!:!!! !..! |||:!!||||| roLeuSerLeuThrSerLysLeuGluArgIleValSerTyrAlaLeuIleValIleCy 266690 : CGTTGTCACTCACATCTAAACTCGAACGAATCGTTTCCTACGCTTTGATCGTCATCTG : 266746 56 : sThrPheLeuLeuSerPheValValIleProGlyIleLeuPheIlePheValIleVal : 74 | !! !! !:!! !|||..!||||||||| !!:!:!!! !:!! !!:!! ! ! sTyrCysSerIleLeuPheThrValIleProCysLeuPheHisLeuValLeuGluAsp 266747 : CTACTGCTCCATACTGTTCACCGTAATCCCTTGCTTGTTTCATCTCGTTCTGGAGGAC : 266803 75 : LysAspValThrThrArgLeuArgIleSerGlyValPheSerPheCysValMetGlyV : 94 :!!..!:!! !|||!:!:!!!:!:!:! !||| !.!.||| !!! !!:!:|||! GluSerIleArgThrLysValLysValPheGlyProLeuSerHisTrpPheValGlyG 266804 : GAGAGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTCTGAGCCATTGGTTCGTCGGAG : 266863 95 : alIleLysTyrTyrTyrLeuIleLysSerAsnLysGlnIleGlyAsnCysValLysGl : 113 !|||!!.||| ! |||:!: ! !!!:!|||:!!||| !!..!||||||:!!!! lyIleAsnTyrThrThrLeuLeuLeuArgSerLysGluIleArgGlyCysValGluHi 266864 : GAATTAACTACACCACACTGTTGCTACGCAGCAAAGAGATACGCGGTTGCGTAGAGCA : 266920 114 : nPheAsnSerAspTrpAlaGlnIleAsnAspIleLysAspLysThrIleMetValLys : 132 ..!..!.!!!|||||| ! :!:!.! :!!|||||| !:!:|||:!!||| sMetGlnThrAspTrpArgIleValThrArgProGluAspLysGlnValMetLeuLys 266921 : CATGCAAACAGATTGGAGGATCGTGACCAGACCGGAGGACAAGCAGGTGATGTTGAAG : 266977 133 : TyrAlaArgPheGlyArgAsnSerSerIleIleCysAlaAlaPheMetTyrGlySerC : 152 !!||||||.!!|||||| !!! !:!!|||.!!||||||||||||||| ! !!.!! AsnAlaArgIleGlyArgTyrIleAlaIlePheCysAlaAlaPheMetGlnCysGlyV 266978 : AACGCGAGGATCGGTCGTTACATTGCTATATTCTGCGCGGCGTTCATGCAATGCGGTG : 267037 153 : ysMetPheTyrAlaCysIleLeuProHisValSerGlyValPheLysAsnLysAsnAs : 171 !:!: !|||..! ||| ! !! !..!! ! !..! ! :!! ! |||!! alLeuGlyTyrCysValIleThrAlaPheThrMetGlnThrValGluValGlyAsnGl 267038 : TTCTCGGCTACTGTGTGATAACGGCGTTCACTATGCAGACCGTGGAAGTCGGTAACGA : 267094 172 : pPro<->ThrGluArgThrPheAlaTyrProCysHisPheIleValPheAsnGlnTyr : 189 : !! ! !! !!.! !!!. !!! ! !! !:!! ! :!!.!! !! uThrArgIleValHisLeuLeuProCysAlaValTyrLysLysMetIleAlaValAsp 267095 : GACTAGGATCGTACATCTGTTGCCCTGTGCAGTTTACAAGAAGATGATCGCAGTTGAT : 267151 190 : GluSerProAlaTyrGluIleValPheSerIleHisCysCysCysAlaPheValLeuA : 209 ||||||.!! !!|||||||||.!! ! !!!.! ! ! !.!|||:!!:!! ThrSerProThrAsnGluIleValLeuValSerGlnPheValSerGlyPheIleValA 267152 : ACCAGCCCGACGAACGAGATTGTCCTTGTTTCACAGTTCGTATCAGGATTCATCGTGA : 267211 210 : laSerIleSerAsnAlaAlaCysAsnLeuIleThrValLeuIleThrHisAlaCysGl : 228 !|||! ! ! !!.!|||! !!:!||| !.!!|||!!! .!!||||||||||| snSerSerValValGlyAlaPheSerLeuAlaAlaValPheAlaAlaHisAlaCysGl 267212 : ATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGTGTTCGCGGCTCACGCGTGCGG : 267268 229 : yGlnLeuGluIleLeuMetValTrpLeuAsnAsp : 239 |||||||...:!:||||||:!!|||:!!!!.!!: yGlnLeuSerValLeuMetMetTrpIleLysGlu 267269 : ACAGCTGAGCGTGCTGATGATGTGGATCAAGGAG : 267303 vulgar: gi|861722533|gb|AKO90011.1| 16 239 . KQ414889.1 266631 267303 + 279 M 156 468 G 0 3 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266632 267303 279 + . gene_id 17 ; sequence gi|861722533|gb|AKO90011.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266632 267303 . + . KQ414889.1 exonerate:protein2genome:local exon 266632 267303 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266632 267303 279 + . alignment_id 17 ; Query gi|861722533|gb|AKO90011.1| ; Align 266632 17 468 ; Align 267103 173 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722533|gb|AKO90011.1| odorant receptor 47 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 215 Query range: 24 -> 197 Target range: 294705 -> 295227 25 : ArgTrpIleLeuLysIleLeuGlyValTrpHisPheAlaIleAsp<->SerSerTyrP : 43 ||| !!:!:|||||| :!!|||:!!|||! .!! ! !..! !!!||| ! . ArgArgLeuLeuLysProIleGlyLeuTrpProLeuIleTyrSerHisThrSerLysL 294706 : CGAAGGCTGTTGAAACCGATCGGTCTTTGGCCACTTATCTACAGTCACACCAGCAAAC : 294763 44 : heHisLysValIleAlaLeuCysHisIleIleIleCysThrPheLeuLeuSerPheVa : 62 !.:!!||||||:!!:!!:!! !! ||| ||||||!!. !:!! !||||| euAsnLysValLeuSerIleIleLeuIleAlaTrpCysThrLeuThrValLeuPheVa 294764 : TGAACAAAGTCCTTTCGATAATTCTGATCGCGTGGTGTACGTTGACCGTACTGTTCGT : 294820 63 : lValIleProGlyIleLeuPheIlePheValIleValLysAspValThrThrArgLeu : 81 |:!!:!:||| !! !! !||| ! ! !! !||||||:::||| ::!:!! lLeuValProCysGlyTyrPheCysValPheHisValLysAsnValLysLeuLysMet 294821 : TTTAGTGCCATGCGGATACTTCTGTGTATTCCACGTgaaaaacgtgaaattgaaGATG : 294877 82 : ArgIleSerGlyValPheSerPheCysValMetGlyValIleLysTyrTyrTyrLeuI : 101 !:!:!! !||| ! ! !!:!! !:!!:!:..!:!!:!!!:!||| !! !|||: LysLeuLeuGlyProValLeuTyrSerMetLeuSerMetLeuArgTyrSerCysLeuV 294878 : AAACTTCTGGGTCCGGTACTATACTCTATGCTCTCTATGCTCAGGTACAGCTGTCTAG : 294937 102 : leLysSerAsnLysGlnIleGlyAsnCysValLysGlnPheAsnSerAspTrpAlaGl : 120 !! !!.!!.. !.!! !:!!|||:!!:!!.!..!..!.!:!|||||| ! alLeuLysThrProAlaPheLysHisCysIleGluAspIleGluAsnAspTrpLysLe 294938 : TTTTGAAAACGCCCGCGTTCAAGCATTGCATCGAAGACATAGAGAACGATTGGAAGTT : 294994 121 : nIleAsnAspIleLysAspLysThrIleMetValLysTyrAlaArgPheGlyArgAsn : 139 !|||:!!:!! :!! !!::!.!!||||||:!!||| !!|||! ! !! !!:!!.. uIleAspAsnProGluHisArgAlaIleMetIleLysAsnAlaMetValThrGlnArg 294995 : GATCGATAATCCGGAACACCGAGCGATCATGATCAAGAACGCGATGGTCACGCAGAGG : 295051 140 : SerSerIleIleCysAlaAlaPheMetTyrGlySerCysMetPheTyrAlaCysIleL : 159 ! !!!!:!! !! !.!! !.!.!!:|||.!!|||...:!!! ||| !..!|||: MetThrValAlaPheThrIleIleIleTyrSerSerAlaValSerTyrHisAlaIleV 295052 : ATGACCGTCGCTTTTACTATTATAATCTACAGTTCTGCGGTGTCGTATCACGCCATTG : 295111 160 : euProHisValSerGlyValPheLysAsnLysAsnAspProThrGluArgThrPheAl : 178 ::||| |||......!!.:!!||||||!!.:!! !||| |||.!!!!. ! alProPhePheSerAsnAlaLeuGluAsnLysLysAsnAsnThrIleArgAlaLeuPr 295112 : tgccatttttttcaaacgctTTGGAGAACAAGAAGAATAATACGATTCGTGCGTTACC : 295168 179 : aTyrProCysHisPheIleValPheAsnGlnTyrGluSerProAlaTyrGluIleVal : 197 ! !||| !!:!! :!! !! ! :!! |||...||||||.!!|||||||||:!! oIleProGlyTyrGluLeuPheValAspAlaTyrSerSerProThrTyrGluIleIle 295169 : AATTCCTGGCTACGAGTTATTCGTAGACGCTTATTCCAGTCCTACCTACGAGATCATA : 295225 vulgar: gi|861722533|gb|AKO90011.1| 24 197 . KQ414889.1 294705 295227 + 215 M 15 45 G 0 3 M 158 474 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294706 295227 215 + . gene_id 18 ; sequence gi|861722533|gb|AKO90011.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294706 295227 . + . KQ414889.1 exonerate:protein2genome:local exon 294706 295227 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294706 295227 215 + . alignment_id 18 ; Query gi|861722533|gb|AKO90011.1| ; Align 294706 25 45 ; Align 294754 40 474 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722533|gb|AKO90011.1| odorant receptor 47 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 191 Query range: 14 -> 242 Target range: 236840 -> 237521 15 : ValAsnSerLysTyrAlaLeuAspAlaAsnArgTrpIleLeuLysIleLeuGlyValT : 34 !.!!:!||| ! |||::!|||.!. !||||||||| :!!|||! !:!!|||..!| AlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrT 236841 : GCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACAT : 236898 35 : rpHisPheAlaIleAspSerSerTyrPheHisLysValIleAlaLeuCysHisIleIl : 53 || !! !|||||| !!.!!.!.!:! !|||:!!! ! ! !:! rp------ProGlnPheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnVa 236899 : GG------CCACAGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGT : 236949 54 : eIleCysThrPheLeuLeuSerPheValValIleProGlyIleLeuPheIlePheVal : 72 :|||||| ! ! !:!! !||| !:!!|||||| !! ||| !:!!.!.:!! lIleCysTyrThrAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeu 236950 : GATCTGCTACACCGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTG : 237006 73 : IleValLysAspValThrThrArgLeuArgIleSerGlyValPheSerPheCysValM : 92 ! ! ! ! !! !|||!:!:!!!:!||| !||| !!!.||| !!! |||. GluLysGlyThrPheTyrThrLysValLysIleLeuGlySerLeuSerHisTrpValP 237007 : GAAAAAGGGACTTTCTACACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGT : 237066 93 : etGlyValIleLysTyrTyrTyrLeuIleLysSerAsnLysGlnIleGlyAsnCysVa : 111 !. !!:!!|||!..||| ! |||:!: ! !!..!||| ||| !!:!!! ! ! heCysIleIleSerTyrThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePh 237067 : TCTGTATCATCAGTTACACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTT : 237123 112 : lLysGlnPheAsnSerAspTrpAlaGlnIleAsnAspIleLysAspLysThrIleMet : 130 !!!.!!..!..!.!!!|||||| ! !! ... ::: ||| :::||| eAsnHisMetGluThrAspTrpArgThrThrThrArgLysGluLysLysGluValMet 237124 : CAATCATATGGAGACCGATTGGAGAACGACGacgagaaaggagaagaaagaagtcATG : 237180 131 : ValLysTyrAlaArgPheGlyArgAsnSerSerIleIleCysAlaAlaPheMetTyrG : 150 :!!|||||||||!:!|||.!!||| !!:!!:!!||| !|||.!! !|||!!::!!| LeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSerCysThrIlePheIleHisG 237181 : TTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCTTGTACGATCTTCATACACG : 237240 151 : lySerCysMetPheTyrAlaCysIleLeuProHisValSerGlyValPheLysAsnLy : 169 ||.!! :!: |||..! !!!: ! !! !..!!!! !||| !! ! ! lyGlyIleLeuGlyTyrCysValMetThrAlaSerThrThrMetValValValValGl 237241 : GTGGTATACTTGGATATTGTGTTATGACAGCGTCCACCACGATGGTTGTCGTGGTTGG : 237297 170 : sAsnAspProThr<->GluArgThrPheAlaTyrProCysHisPheIleValPheAsn : 187 !||| ! !!||| !|||..!.!. !!! ||| :!! :!!.!! yAsnLysThrThrIleLeuArgValLeuProLeuProMetTyrLysGlyLeuLeuPro 237298 : AAACAAGACTACGATCTTGCGCGTGCTGCCCTTACCAATGTACAAAGGGCTCCTTCCA : 237354 188 : GlnTyrGluSerProAlaTyrGluIleValPheSerIleHisCysCysCysAlaPheV : 207 !! !!:! !! ! !!!!:|||||| !!! ! !!!.! ! !! !!.!|||: ValAspThrAsnThrMetAsnAspIleValValLeuSerGlnPheLeuSerGlyPheI 237355 : GTCGATACGAATACTATGAACGACATCGTTGTTTTGTCACAATTTCTCTCCGGATTTA : 237414 208 : alLeuAlaSerIleSerAsnAlaAlaCysAsnLeuIleThrValLeuIleThrHisAl : 226 !! ! !!:!! !:!!! !::!!.! !:!|||! !!:!!.!|||! !:!!||||| leAlaAsnAsnSerAlaIleSerValIleSerLeuThrSerAlaLeuThrSerHisAl 237415 : TAGCGAACAACAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAACATCACACGC : 237471 227 : aCysGlyGlnLeuGluIleLeuMetValTrpLeuAsnAspLeuAspSer : 242 |! !|||||||||...:!::!!|||:!!! !:!!.!.|||!!!! ||| aSerGlyGlnLeuSerValValMetLeuSerIleGluAspPheValSer 237472 : GTCTGGCCAGTTGAGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGT : 237521 vulgar: gi|861722533|gb|AKO90011.1| 14 242 . KQ414889.1 236840 237521 + 191 M 20 60 G 2 0 M 137 411 G 0 3 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 236841 237521 191 + . gene_id 19 ; sequence gi|861722533|gb|AKO90011.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 236841 237521 . + . KQ414889.1 exonerate:protein2genome:local exon 236841 237521 . + . insertions 3 ; deletions 2 KQ414889.1 exonerate:protein2genome:local similarity 236841 237521 191 + . alignment_id 19 ; Query gi|861722533|gb|AKO90011.1| ; Align 236841 15 60 ; Align 236901 37 411 ; Align 237315 174 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722533|gb|AKO90011.1| odorant receptor 47 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 150 Query range: 338 -> 404 Target range: 292401 -> 293251 339 : IleSerGluSerThrTyrLeuThrArgTrpTyrGlnIleProGluAsnPheAlaArgG : 358 |||:!!.!.:!!:!!||| !|||..!||||||.!.:!:|||..!... ||||||! IleAlaHisAlaSerTyrAspThrGluTrpTyrAsnLeuProArgArgLysAlaArgA 292402 : ATCGCGCACGCTTCCTACGATACAGAATGGTACAATCTGCCGAGACGGAAGGCTCGTG : 292459 359 : lyLeuValLeuThrIleAlaIleSerGlnAsnSerAsnProIleLysAlaGlyLysLe : 377 !:!!||||||..!:!!||||||!!!:!!:!! !!! ! !:!!! !|||||||||:! spIleValLeuValLeuAlaIleThrLysHisProIleLysLeuThrAlaGlyLysIl 292460 : ACATCGTTCTGGTGCTTGCCATAACGAAACATCCGATCAAACTTACAGCAGGCAAAAT : 292516 378 : uIleProLeuSerIleAsnThrPheGlyThr >>>> Target Intron 1 >>>> : 388 !.!! !||||||:!:||||||||||||.!! 652 bp ePheValLeuSerLeuAsnThrPheGlyAla++ 292517 : ATTCGTTCTCTCGTTGAACACTTTTGGCGCTgt......................... : 292551 389 : ValMetArgThrSerValValTyrLeuAsnPheLeuArgLysLeuMetGlu : 404 |||:!!!:!:!!||||||||||||:!!|||.!.||||||! :!!! ||| ++ValLeuLysSerSerValValTyrMetAsnMetLeuArgThrValThrGlu 292552 : agGTGCTGAAATCGTCGGTAGTTTACATGAACATGCTACGAACCGTCACTGAA : 293251 vulgar: gi|861722533|gb|AKO90011.1| 338 404 . KQ414889.1 292401 293251 + 150 M 49 147 5 0 2 I 0 648 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 292402 293251 150 + . gene_id 20 ; sequence gi|861722533|gb|AKO90011.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 292402 292548 . + . KQ414889.1 exonerate:protein2genome:local exon 292402 292548 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 292549 292550 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 292549 293200 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 293199 293200 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 293201 293251 . + . KQ414889.1 exonerate:protein2genome:local exon 293201 293251 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 292402 293251 150 + . alignment_id 20 ; Query gi|861722533|gb|AKO90011.1| ; Align 292402 339 147 ; Align 293201 388 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722533|gb|AKO90011.1| odorant receptor 47 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 332 -> 397 Target range: 230238 -> 230433 333 : ThrAlaLysCysLysLeuIleSerGluSerThrTyrLeuThrArgTrpTyrGlnIleP : 352 ::! !:!!|||!:! !:!!.!!|||!.!:!!|||:!!! !..!||||||!:!:!! SerLeuGlnCysArgLysValGlyGluLysSerTyrMetIleGluTrpTyrArgLeuT 230239 : tcCTTACAGTGCAGAAAAGTCGGCGAAAAGTCGTACATGATCGAATGGTACCGATTAA : 230296 353 : roGluAsnPheAlaArgGlyLeuValLeuThrIleAlaIleSerGlnAsnSerAsnPr : 371 !!! !||| !! ! !!! !:!!|||! !||||||!!:|||.!. !|||!.. hrGlyAsnLysLysLeuCysCysIleLeuIleIleAlaMetSerAsnCysSerThrLy 230297 : CCGGAAACAAGAAGCTCTGTTGCATTTTGATCATCGCCATGTCCAATTGCTCGACGAA : 230353 372 : oIleLysAlaGlyLysLeuIleProLeuSerIleAsnThrPheGlyThrValMetArg : 390 !.!!! !||||||!!.:!!:!! !||||||:!!|||||||||.!! !|||! ! ! sPheThrAlaGlyAsnMetValGluLeuSerValAsnThrPheSerAspValSerIle 230354 : ATTTACAGCAGGAAACATGGTTGAATTATCCGTAAACACTTTCAGCGACGTAAGTATC : 230410 391 : ThrSerValValTyrLeuAsn : 397 ! !! ! !|||||| !||| IlePheSerValTyrThrAsn 230411 : ATATTCTCTGTTTACACGAAT : 230433 vulgar: gi|861722533|gb|AKO90011.1| 332 397 . KQ414889.1 230238 230433 + 111 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 230239 230433 111 + . gene_id 21 ; sequence gi|861722533|gb|AKO90011.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 230239 230433 . + . KQ414889.1 exonerate:protein2genome:local exon 230239 230433 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 230239 230433 111 + . alignment_id 21 ; Query gi|861722533|gb|AKO90011.1| ; Align 230239 333 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722533|gb|AKO90011.1| odorant receptor 47 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 261 -> 298 Target range: 224128 -> 224239 262 : LysThrIleArgPheIleValLysIleGluAsnLeuPheGlnGlnIleCysPheValG : 281 ||| ! !||||||:!!..! ! ! !|||!!. !.!.||||||:!!! ||||||| LysCysCysArgPheLeuThrHisThrGluLysAlaLeuGlnGlnValSerPheValG 224129 : AAATGTTGCAGATTTTTAACGCACACAGAGAAAGCACTGCAACAAGTATCGTTCGTGG : 224186 282 : luValValGlyCysThrLeuIleIleCysLeuValGlyTyrTyrValLeuLeu : 298 || !!:!!||||||! !|||! !|||||||||:!!||||||||||||:!!:!! luPheLeuGlyCysMetLeuAsnIleCysLeuLeuGlyTyrTyrValIleVal 224187 : AATTTCTAGGCTGCATGTTGAACATATGTCTTCTCGGGTATTACGTTATTGTG : 224239 vulgar: gi|861722533|gb|AKO90011.1| 261 298 . KQ414889.1 224128 224239 + 105 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 224129 224239 105 + . gene_id 22 ; sequence gi|861722533|gb|AKO90011.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 224129 224239 . + . KQ414889.1 exonerate:protein2genome:local exon 224129 224239 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 224129 224239 105 + . alignment_id 22 ; Query gi|861722533|gb|AKO90011.1| ; Align 224129 262 111 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722533|gb|AKO90011.1| odorant receptor 47 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 331 -> 394 Target range: 297632 -> 297821 332 : LeuThrAlaLysCysLysLeuIleSerGluSerThrTyrLeuThrArgTrpTyrGlnI : 351 :!!:!!..!:!!..!:!! !.!!.!!.!.:!!.!!||| !! !..!||||||.!.: ValSerCysGlnAlaGluLysPheGlyAsnAlaAlaTyrAsnIleGluTrpTyrAsnL 297633 : GTTTCTTGTCAGGCTGAAAAATTCGGCAATGCAGCTTATAACATCGAATGGTACAACT : 297690 352 : leProGluAsnPheAlaArgGlyLeuValLeuThrIleAlaIleSerGlnAsnSerAs : 370 !!||| !||| |||! !! !|||||||||! !|||!.!|||:!!:!! ! !! euProProAsnArgAlaLeuAspLeuValLeuMetIleGlyIleAlaLysPheProPr 297691 : TACCGCCAAACAGGGCTCTCGATCTGGTGTTAATGATCGGTATAGCAAAATTTCCACC : 297747 371 : nProIleLysAlaGlyLysLeuIleProLeuSerIleAsnThrPheGlyThrValMet : 389 !:!!! !...||||||:::... :::|||||||||||||||.!!.!!||| oArgLeuThrGlyGlyLysIlePheAspIleSerIleAsnThrPheSerAlaValArg 297748 : GAGGCTCACAggtggaaaaatattcgatatatCGATAAACACGTTCAGTGCCGTACGT : 297804 390 : ArgThrSerValVal : 394 ||| |||:::::: ArgGlnSerLeuIle 297805 : Agacaaagtttaatt : 297821 vulgar: gi|861722533|gb|AKO90011.1| 331 394 . KQ414889.1 297632 297821 + 104 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 297633 297821 104 + . gene_id 23 ; sequence gi|861722533|gb|AKO90011.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 297633 297821 . + . KQ414889.1 exonerate:protein2genome:local exon 297633 297821 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 297633 297821 104 + . alignment_id 23 ; Query gi|861722533|gb|AKO90011.1| ; Align 297633 332 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722533|gb|AKO90011.1| odorant receptor 47 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 335 -> 388 Target range: 219512 -> 219671 336 : CysLysLeuIleSerGluSerThrTyrLeuThrArgTrpTyrGlnIleProGluAsnP : 355 |||::: |||...||| :!!|||:!!! !..!||||||!:!:!: !!! !!!. CysArgLysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysL 219513 : TGtaggaaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGA : 219570 356 : heAlaArgGlyLeuValLeuThrIleAlaIleSerGlnAsnSerAsnProIleLysAl : 374 !! ! !! !|||||||||||||||!!:|||.!.::!|||! !:!:! !|| ysLysLeuTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAl 219571 : AAAAGCTCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGC : 219627 375 : aGlyLysLeuIleProLeuSerIleAsnThrPheGlyThrVal : 388 ||||!!.:!!:!! !|||||||||!:!|||||| ! !||| aGlyAsnMetValGluLeuSerIleSerThrPheThrAspVal 219628 : CGGAAATATGGTCGAATTGTCTATCAGCACTTTTACCGACGTG : 219671 vulgar: gi|861722533|gb|AKO90011.1| 335 388 . KQ414889.1 219512 219671 + 101 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219513 219671 101 + . gene_id 24 ; sequence gi|861722533|gb|AKO90011.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 219513 219671 . + . KQ414889.1 exonerate:protein2genome:local exon 219513 219671 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219513 219671 101 + . alignment_id 24 ; Query gi|861722533|gb|AKO90011.1| ; Align 219513 336 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887641|gb|AGG17937.1| olfactory receptor 4 [Microplitis mediator] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 349 -> 392 Target range: 1712558 -> 1713321 350 : ValThrLeuValIleMetArgSerGlnIleSerCysGlnLeuThrAlaGlyLysIl : 368 :!!! !|||||||||!!:||||||::!:!! !!||| ||||||||| !! !.! LeuIleLeuValIleIleArgSerArgValProCysCysLeuThrAlaArgGlyPh 1712559 : TTGATACTCGTTATCATAAGATCGAGAGTACCTTGTTGCTTGACCGCCAGAGGATT : 1712613 369 : eLeuValLeuSerMetGluThrPheThrSer >>>> Target Intron 1 >> : 379 !!!!|||:!!|||:!!||||||!:!|||!.! 634 bp ePheValIleSerLeuGluThrTyrThrLys++ 1712614 : CTTCGTAATATCTTTGGAAACGTATACGAAGgt....................... : 1712648 380 : >> IleValLysThrSerGlySerTyrPheThrMetLeuValGln : 392 :!!:!!!..|||:!!! !||||||||||||:!!||| !||| ++ValIleSerThrAlaValSerTyrPheThrLeuLeuArgGln 1712649 : ..agGTTATAAGTACAGCAGTGTCGTACTTCACACTGTTAAGGCAA : 1713321 vulgar: gi|452887641|gb|AGG17937.1| 349 392 . KQ414915.1 1712558 1713321 + 104 M 29 87 5 0 2 I 0 630 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712559 1713321 104 + . gene_id 1 ; sequence gi|452887641|gb|AGG17937.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1712559 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712559 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713321 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713321 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712559 1713321 104 + . alignment_id 1 ; Query gi|452887641|gb|AGG17937.1| ; Align 1712559 350 87 ; Align 1713280 379 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887643|gb|AGG17938.1| olfactory receptor 5 [Microplitis mediator] Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 122 -> 224 Target range: 1605 -> 1911 123 : PheValLeuValTyrSerIleTrpIleTyrValIleAlaIleLeuPheLeuValPheLeuPr : 143 !:!:!!:!! !||||||||| !! ! :!!:!!..!:!!:!!.!.!!!|||! !|| TyrIleValLysTyrSerIleValAsnAlaIleValCysValIleLeuPheValSerThrPr 1606 : TACATTGTCAAATATTCGATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCC : 1666 144 : oLeuIleProValThrLeuAspIleIleLeuProLeuAsnGluSerArgProLysIleGluL : 164 |:!!! !||| !! !|||||||||:!!|||||| !|||||||||||| ! ! ! : oValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrI 1667 : GGTGACACCGCATATTTTGGACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACA : 1729 165 : euTyrHisThrAspTyrLeuPheGlyProValLysTyrSerTrpValIleSerLeuHisGln : 184 !!|||! .!! !!|||!!! !! ! ! !||||||..! ! !|||! ! !|||..! leTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMet 1730 : TTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATG : 1789 185 : CysIleIleSerProPheProThrIleIleIleIleAlaThrGlySerLeuTyrCysAsnCy : 205 ... !:!:! !! ! ! ! ! !:!: !.!!||| !! !!!! !||| !! AlaSerValIleLeuValValPheTyrValTyrPheAlaCysAspThrSerTyrIleTyrVa 1790 : GCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGT : 1852 206 : sCysGlnHisAlaCysGlyMetPheGluValIleGlyTyrArgLeuLysAsnLeuAsp : 224 ! ||||||!.!||||||:!!!!.! ||| !||| :::::::::::: ||| lValGlnHisGlyCysGlyLeuLeuAlaValSerGly***LysIleArgSerAsnAsp 1853 : CGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaattcgatcgaacgat : 1911 vulgar: gi|452887643|gb|AGG17938.1| 122 224 . KQ414921.1 1605 1911 + 132 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1606 1911 132 + . gene_id 1 ; sequence gi|452887643|gb|AGG17938.1| ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1606 1911 . + . KQ414921.1 exonerate:protein2genome:local exon 1606 1911 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1606 1911 132 + . alignment_id 1 ; Query gi|452887643|gb|AGG17938.1| ; Align 1606 123 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722548|gb|AKO90016.1| odorant receptor 52 [Microplitis mediator] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 304 -> 395 Target range: 807305 -> 807578 305 : LeuPheSerIleValTyrValPheTyrThrValMetHisLeuPheValTyrCysTyrV : 324 ||| |||.!!||| :!! ! ! !:!!!!:!!.|||!:!:!!|||..!|||! LeuArgSerPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrA 807306 : TTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACG : 807363 325 : alGlyAspTyrLeuSerPheGluSerThrLeuIleGlyGlnSerTyrTyrLysSerLy : 343 .!|||:!! |||..!! ..!!!! ! !|||!.!|||:!! !||| ! ||| laGlyAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLe 807364 : CGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCT : 807420 344 : sTrpTyrGluLeuProValIleLysSerArgSerLeuMetPheIleGlyHisArgAla : 362 ||||||...! !! !! ! ! !:!!|||..!|||:!:!!.||| !||||||!.! uTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGly 807421 : TTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGA : 807477 363 : ArgArgProLeuLeuLeuThrAlaGlyLysPheCysAlaPheSerArgAsnLeuPheL : 382 !.! !|||! !! !:!!||||||||||||||| ! !!.!.!:!! ! ! !||| AsnSerProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheL 807478 : AATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCA : 807537 383 : euAlaValLeuLysThrSerPheGlyTyrLeuSerMetLeu : 395 !! !:!!||||||.!!||| !..!|||||||||:!::!! ysGluIleLeuLysAlaSerGlySerTyrLeuSerValMet 807538 : AGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATG : 807578 vulgar: gi|861722548|gb|AKO90016.1| 304 395 . KQ414940.1 807305 807578 + 140 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807306 807578 140 + . gene_id 1 ; sequence gi|861722548|gb|AKO90016.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807306 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807306 807578 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807306 807578 140 + . alignment_id 1 ; Query gi|861722548|gb|AKO90016.1| ; Align 807306 305 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722545|gb|AKO90015.1| odorant receptor 51 [Microplitis mediator] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 300 -> 407 Target range: 807260 -> 807581 301 : PheLeuLeuLeuLysMetIleGluAsnGlnAsnTyrAlaAsnMetIleProTyrAlaM : 320 |||:!!!!!||| :!:...!..:!!:!! !!!.! :!: ! ! !: PheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerPheV 807261 : TTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCTTCG : 807318 321 : etLeuLeuAlaSerLeuThrLeuSerIleLeuIleIleCysTyrPheSerGluLeuLe : 339 !:|||:!!!.!!!!||| !:!!..!:!:! !:!! !..!||| .!!.!. !|| alLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnThrLe 807319 : TTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACACACT : 807375 340 : uGluSerGlnPheIleGluAlaGlyIleGlnAlaTyrSerIleAsnTrpTyrGlnLeu : 358 |||||||!:! ! !||| !!.! ! ||||||..! ! !||||||!::! ! uGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArgCys 807376 : CGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGTTGC : 807432 359 : ProProLysAlaArgLysTyrLeuIleLeuIleIleIleIleSerGlnArgSerTyrL : 378 ! ! ! ! ||| !!:! !!|||:!!||||||||| ! !.!!.!. ! !!|||: HisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProTyrA 807433 : CACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTTATC : 807492 379 : ysIleThrAlaGlyGlyIleIleAspLeuSerTyrIleAlaPheValGlnIleLeuLy : 397 ::|||||||||||| !.!!:!! :!!!:! !.!!.!!||| !:!!|||||||| rgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLeuLy 807493 : GTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACTGAA : 807549 398 : sThrGlyPheAlaTyrLeuGlnLeuLeuArg : 407 |.!!..! !:!!||||||...:!!:!!!:! sAlaSerGlySerTyrLeuSerValMetLys 807550 : AGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: gi|861722545|gb|AKO90015.1| 300 407 . KQ414940.1 807260 807581 + 125 M 107 321 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807261 807581 125 + . gene_id 1 ; sequence gi|861722545|gb|AKO90015.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807261 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807261 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807261 807581 125 + . alignment_id 1 ; Query gi|861722545|gb|AKO90015.1| ; Align 807261 301 321 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722542|gb|AKO90014.1| odorant receptor 50 [Microplitis mediator] Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 159 Query range: 128 -> 215 Target range: 32488 -> 32749 129 : TyrIleTyrSerIleAlaValValPheAlaSerIleProValLeuSerLysValLeuAsp : 148 !:!:!!|||! ! ! ! !! !!:!|||! !:!:! ! !!||| !! ! :!!:!!||| PheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIleIleAsp 32489 : TTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATTATCGAC : 32546 149 : LeuIleAlaProLeuAsnGluSerArgProLysValTyrLeuTyrProAlaGluTyrPhe : 168 :!!||||||||||||||||||||||||! ! ! ||| ! !||| !!!.!||||||||| ValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGluTyrPhe 32547 : GTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAATATTTC : 32606 169 : ValAspGlnAspLysTyrSerThrTyrIleTyrIleHisGlyTyrMetAlaLeuProIle : 188 |||||||||...|||||| ||| :!:||| ! ! !.!!:!! !!:!! ValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrValThrLeu 32607 : GTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTTACCCTT : 32666 189 : ThrMetThrLeuCysThrAlaTyrAspPheLeuTyrSerAlaCysGlyHisHisValCys : 208 !:!!|||:!!..!|||||| ||| :::::: ! !||||||||| GlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHisValCys 32667 : GGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCACGTTTGC : 32726 209 : SerMetPheLysIleAlaGly : 215 :!!! |||!!.||| !||| AlaLysPheAsnIleLeuGly 32727 : GCCAAATTCAATATTCTCGGG : 32749 vulgar: gi|861722542|gb|AKO90014.1| 128 215 . KQ415081.1 32488 32749 + 159 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32489 32749 159 + . gene_id 1 ; sequence gi|861722542|gb|AKO90014.1| ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32489 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32489 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32489 32749 159 + . alignment_id 1 ; Query gi|861722542|gb|AKO90014.1| ; Align 32489 129 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887643|gb|AGG17938.1| olfactory receptor 5 [Microplitis mediator] Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 120 -> 217 Target range: 32461 -> 32749 121 : ArgLeuPheValLeuValTyrSerIleTrpIleTyrValIleAlaIleLeuPheLeuVal : 140 |||...||| |||:!! !!!! !!:::!!||| |||!.!|||!!!! !! !!.! ArgPhePhePheLeuIleThrThrGlyPheValTyr---IleGlyIlePheSerTyrAla 32462 : cgtttctttttcctaaTTACTACAGGATTCGTATAC---ATTGGAATATTTTCCTACGCA : 32516 141 : PheLeuProLeuIleProValThrLeuAspIleIleLeuProLeuAsnGluSerArgPro : 160 .!.:!!! !!!!:!:||| !! !:!!|||:!:||| !||||||||||||||||||! ! IleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSerArgHis 32517 : ATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCCCGACAC : 32576 161 : LysIleGluLeuTyrHisThrAspTyrLeuPheGlyProValLysTyrSerTrpValIle : 180 ! :!! !! !||| ! !!!:|||!!! !!! ! |||||| !||| HisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeuProIle 32577 : CATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttcctaccAATC : 32636 181 : SerLeuHisGlnCysIleIleSerProPheProThrIleIleIleIleAlaThrGlySer : 200 :!!||||||..! ! ! ! ! !!.!! ! !! :!! !! |||... ||| AlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaValAspSer 32637 : GCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattca : 32696 201 : LeuTyrCysAsnCysCysGlnHisAlaCysGlyMetPheGluValIleGly : 217 :::::: |||!.!|||!.!! |||.!.:!!:!!||| IlePheIlePhePheMetPheHisValCysAlaLysPheAsnIleLeuGly 32697 : attttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATTCTCGGG : 32749 vulgar: gi|452887643|gb|AGG17938.1| 120 217 . KQ415081.1 32461 32749 + 109 M 12 36 G 1 0 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32462 32749 109 + . gene_id 1 ; sequence gi|452887643|gb|AGG17938.1| ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32462 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32462 32749 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32462 32749 109 + . alignment_id 1 ; Query gi|452887643|gb|AGG17938.1| ; Align 32462 121 36 ; Align 32498 134 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887643|gb|AGG17938.1| olfactory receptor 5 [Microplitis mediator] Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 122 -> 224 Target range: 181 -> 487 123 : PheValLeuValTyrSerIleTrpIleTyrValIleAlaIleLeuPheLeuValPheLeuProL : 144 !:!:!!:!! !||||||||| !! ! :!!:!!..!:!!:!!.!.!!!|||! !|||: TyrIleValLysTyrSerIleValAsnAlaIleValCysValIleLeuPheValSerThrProV 182 : TACATTGTCAAATATTCGATAGTGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGG : 245 145 : euIleProValThrLeuAspIleIleLeuProLeuAsnGluSerArgProLysIleGluLeuTy : 165 !!! !||| !! !|||||||||:!!|||||| !|||||||||||| ! ! ! :!!|| alThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyrIleTy 246 : TGACACCGCATATTTTGGACATTTTACTACCGAAAAACGAGTCACGAGACGTAGCGTACATTTA : 308 166 : rHisThrAspTyrLeuPheGlyProValLysTyrSerTrpValIleSerLeuHisGlnCysIle : 186 |! .!! !!|||!!! !! ! ! !||||||..! ! !|||! ! !|||..!... ! rProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHisMetAlaSer 309 : CCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCC : 371 187 : IleSerProPheProThrIleIleIleIleAlaThrGlySerLeuTyrCysAsnCysCysGlnH : 208 :!:! !! ! ! ! ! !:!: !.!!||| !! !!!! !||| !! ! |||| ValIleLeuValValPheTyrValTyrPheAlaCysAspThrSerTyrIleTyrValValGlnH 372 : GTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAAC : 437 209 : isAlaCysGlyMetPheGluValIleGlyTyrArgLeuLysAsnLeuAsp : 224 ||!.!||||||:!!!!.! ||| !||| :::::::::::: ||| isGlyCysGlyLeuLeuAlaValSerGly***LysIleArgSerAsnAsp 438 : ACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaattcgatcgaacgat : 487 vulgar: gi|452887643|gb|AGG17938.1| 122 224 . LHQN01023902.1 181 487 + 132 M 102 306 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 182 487 132 + . gene_id 1 ; sequence gi|452887643|gb|AGG17938.1| ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 182 487 . + . LHQN01023902.1 exonerate:protein2genome:local exon 182 487 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 182 487 132 + . alignment_id 1 ; Query gi|452887643|gb|AGG17938.1| ; Align 182 123 306 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887639|gb|AGG17936.1| olfactory receptor 3 [Microplitis mediator] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 134 -> 216 Target range: 11492 -> 11735 135 : IleIleTyrIleMetAspProValLeuSerAlaIleValAsnIleIleSerLysSerAsn : 154 .!!:!:!:!|||...! ||| ! !!!! !:!:|||||| !!.!! !..!||| PheLeuPheIleGlnValProTrpThrThrArgLeuValAsnSerTyrLysThrGlnAsn 11493 : TTCTTGTTCATACAAGTGCCATGGACGACCCGATTGGTGAACTCGTACAAGACACAGAAT : 11550 155 : AspSerMetProLeuLysPheSerValProMetArgPheIleMetPheAspGluGluLys : 174 !!! !|||:!!||| !:!!||| !!!:! !.!. !!||||||! !:!! IleThrProSerLeuGlnPheValIlePro---GlyTyrTyrPheValAspGluValGlu 11551 : ATAACGCCAAGTTTGCAATTCGTCATACCC---GGATATTACTTCGTCGACGAAGTAGAA : 11607 175 : TyrTyrTrpLeuLeuLeuIleLeuSerAsnThrCysValIlePheIleIleAsnValIle : 194 ||||||!::! !:!!:!!:!!! !.!!!.. ! |||:!:.!!:!!:!: ||| ! TyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeuIleValValValValTyr 11608 : TACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTAC : 11667 195 : IleCysCysAspValIlePheIleThrValValGlnHisValCysGlyIlePheAlaVal : 214 !..!||||||..!! !!:!!!:..!:!!|||||||||..!||||||:!:||||||||| CysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaVal 11668 : TGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTG : 11727 215 : ValGly : 216 !.!||| AlaGly 11728 : GCCGGG : 11735 vulgar: gi|452887639|gb|AGG17936.1| 134 216 . LHQN01025741.1 11492 11735 + 127 M 30 90 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11493 11735 127 + . gene_id 1 ; sequence gi|452887639|gb|AGG17936.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11493 11735 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11493 11735 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 11493 11735 127 + . alignment_id 1 ; Query gi|452887639|gb|AGG17936.1| ; Align 11493 135 90 ; Align 11583 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887639|gb|AGG17936.1| olfactory receptor 3 [Microplitis mediator] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 129 -> 216 Target range: 4984 -> 5242 130 : ValAsnMetGlyValIleIleTyrIleMetAspProValLeuSerAlaIleValAsnIleIl : 150 :!!::::!: !!!.! !:!!!:!!!: ||| !!:!!||| !!|||:!!:!!|||:! IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLe 4985 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCT : 5045 151 : eSerLysSerAsnAspSerMetProLeuLysPheSerValProMetArgPheIleMetPheA : 171 !! ! !! !|||!!:!!! !!! ! !||| ! !||| !!:!.!!:!: | uMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal---A 5046 : TATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC---G : 5105 172 : spGluGluLysTyrTyrTrpLeuLeuLeuIleLeuSerAsnThrCysValIlePheIleIle : 191 |||||!!:||||||:!!!::|||:!!:!! ! !! ! !! ! |||:!!.!.:!!||| spGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIle 5106 : ACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATC : 5165 192 : AsnValIleIleCysCysAspValIlePheIleThrValValGlnHisValCysGlyIlePh : 212 ::!|||.!! !..!||||||!.!! !!:!:!: !!.!|||||||||!.!||||||:!:!! SerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLe 5166 : TCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTT : 5228 213 : eAlaValValGly : 216 .|||:!!!.!||| uAlaIleAlaGly 5229 : GGCCATTGCAGGG : 5242 vulgar: gi|452887639|gb|AGG17936.1| 129 216 . LHQN01025741.1 4984 5242 + 121 M 40 120 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4985 5242 121 + . gene_id 2 ; sequence gi|452887639|gb|AGG17936.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4985 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4985 5242 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 4985 5242 121 + . alignment_id 2 ; Query gi|452887639|gb|AGG17936.1| ; Align 4985 130 120 ; Align 5105 171 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887639|gb|AGG17936.1| olfactory receptor 3 [Microplitis mediator] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 134 -> 216 Target range: 1588 -> 1831 135 : IleIleTyrIleMetAspProValLeuSerAlaIleValAsnIleIleSerLysSerAsnAs : 155 :!!|||!:!! ! ! !!:!! ! !! !:!!:!!:!!:!!|||||| !!.!|||!! ValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGl 1589 : GTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGA : 1649 156 : pSerMetProLeuLysPheSerValProMetArgPheIleMetPheAspGluGluLysTyrT : 176 :||| !:!! ! |||! ! !||| !!:! ! .!!|||||||||:!!:!!| uSerArgGlyValAspPheIleTyrPro---AlaTyrTyrGlyLeuAspGluGluGluHisT 1650 : ATCGCGTGGGGTTGACTTCATTTATCCT---GCATACTACGGTCTCGACGAGGAGGAACATT : 1709 177 : yrTrpLeuLeuLeuIleLeuSerAsnThrCysValIlePheIleIleAsnValIleIleCys : 196 ||!:::!!|||:!! !! !! ! ! ! :!!! ! ! :!:.!! !||| !|||! ! yrTyrIleLeuMetGlyHisMetLeuCysValIleThrValValPhePheValTyrIleSer 1710 : ATTACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTCTACATCTCC : 1769 197 : CysAspValIlePheIleThrValValGlnHisValCysGlyIlePheAlaValValGly : 216 ||||||..!|||!:!!!:!.!:!!|||||||||!.!||||||:!!.!. !||| !||| CysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnValSerGly 1770 : TGTGACACGATCTACATGAATATCGTGCAACACGCGTGCGGATTACTGAACGTCTCTGGG : 1831 vulgar: gi|452887639|gb|AGG17936.1| 134 216 . LHQN01025741.1 1588 1831 + 113 M 30 90 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1589 1831 113 + . gene_id 3 ; sequence gi|452887639|gb|AGG17936.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1589 1831 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1589 1831 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 1589 1831 113 + . alignment_id 3 ; Query gi|452887639|gb|AGG17936.1| ; Align 1589 135 90 ; Align 1679 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887641|gb|AGG17937.1| olfactory receptor 4 [Microplitis mediator] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 154 -> 218 Target range: 11546 -> 11735 155 : GlnAsnGluThrIleProLysArgPheSerIleProIleTyrTrpLysThrProAspIle : 174 |||||| !||| ! ! !!:!||| !|||||| !|||!:: ..! !!!::!! GlnAsnIleThrProSerLeuGlnPheValIleProGlyTyrTyrPheValAspGluVal 11547 : CAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTCGACGAAGTA : 11604 175 : GluLysTyrTyrTyrTyrLeuIleSerPheGlnThrLeuAsnThrAsnPheIleIleSer : 194 ||| ||||||||||||:!!||| ! ! !|||! !!....! .!!:!!:!: ! Glu---TyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeuIleValValVal 11605 : GAA---TACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTG : 11661 195 : IleThrCysAlaSerAspAlaMetPheIleAsnLeuLeuGlnHisValThrGlyLeuPhe : 214 :!: !||||||!!!|||.!!! !:!!!: |||:!!||||||..! !||||||||| ValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPhe 11662 : GTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTC : 11721 215 : SerValThrGly : 218 :!!|||.!!||| AlaValAlaGly 11722 : GCCGTGGCCGGG : 11735 vulgar: gi|452887641|gb|AGG17937.1| 154 218 . LHQN01025741.1 11546 11735 + 113 M 21 63 G 1 0 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11547 11735 113 + . gene_id 1 ; sequence gi|452887641|gb|AGG17937.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11547 11735 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11547 11735 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 11547 11735 113 + . alignment_id 1 ; Query gi|452887641|gb|AGG17937.1| ; Align 11547 155 63 ; Align 11610 177 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887643|gb|AGG17938.1| olfactory receptor 5 [Microplitis mediator] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 127 -> 217 Target range: 4975 -> 5242 128 : SerIleTrpIleTyrValIleAlaIleLeuPheLeuValPheLeuProLeuIleProValTh : 148 !!!:!: |||! :!! !||| !||||||:!! ! ||||||!!!:!: !! !! ThrValHisIleSerLeuCysAlaAlaLeuPheMetCys---LeuProPheValSerProIl 4976 : ACAGTGCATATATCGTTATGCGCCGCTCTATTTATGTGC---TTGCCGTTCGTGTCGCCGAT : 5033 149 : rLeuAspIleIleLeuProLeuAsnGluSerArgProLysIleGluLeuTyrHisThrAspT : 169 !|||||||||:!!:!!||||||||||||!!!||| !!::!:!: :!!|||! .!! !!| eLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrT 5034 : TCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACT : 5096 170 : yrLeuPheGlyProValLysTyrSerTrpValIleSerLeuHisGlnCysIleIleSerPro : 189 ||!!! !!! ! !! !|||||| !!:::!!||| ! !|||..!! !:!!:!! ! ! yrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValVal 5097 : ATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTA : 5156 190 : PheProThrIleIleIleIleAlaThrGlySerLeuTyrCysAsnCysCysGlnHisAlaCy : 210 .!.! !! ! !:!!.!! !||| !! !:!! !||| !!..! ||||||||||| MetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCy 5157 : ATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTG : 5219 211 : sGlyMetPheGluValIleGly : 217 ||||:!!!!.! :!! !||| sGlyLeuLeuAlaIleAlaGly 5220 : CGGATTGTTGGCCATTGCAGGG : 5242 vulgar: gi|452887643|gb|AGG17938.1| 127 217 . LHQN01025741.1 4975 5242 + 119 M 13 39 G 1 0 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4976 5242 119 + . gene_id 1 ; sequence gi|452887643|gb|AGG17938.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4976 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4976 5242 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 4976 5242 119 + . alignment_id 1 ; Query gi|452887643|gb|AGG17938.1| ; Align 4976 128 39 ; Align 5015 142 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887643|gb|AGG17938.1| olfactory receptor 5 [Microplitis mediator] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 141 -> 217 Target range: 1603 -> 1831 142 : LeuProLeuIleProValThrLeuAspIleIleLeuProLeuAsnGluSerArgProLysIl : 162 :!! !!:!!! ||| !..!||||||:!!|||! !||| !|||||||||||| ! ValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValAs 1604 : GTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGA : 1664 163 : eGluLeuTyrHisThrAspTyrLeuPheGlyProValLysTyrSerTrpValIleSerLeuH : 183 ! :!!|||! !.!! !!||| !.!!! ! !! !:!!:!!! !!:::!!:!:! ! !| pPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyH 1665 : CTTCATTTATCCTGCATACTACGGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTC : 1727 184 : isGlnCysIleIleSerProPheProThrIleIleIleIleAlaThrGlySerLeuTyrCys : 203 ||..! ! !:!:! ! !! ! ! !.!!:!! !|||:!! !! !!!!:!!||| isMetLeuCysValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMet 1728 : ACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTCTACATCTCCTGTGACACGATCTACATG : 1787 204 : AsnCysCysGlnHisAlaCysGlyMetPheGluValIleGly : 217 ||| ! |||||||||||||||:!:.!..!.||| !||| AsnIleValGlnHisAlaCysGlyLeuLeuAsnValSerGly 1788 : AATATCGTGCAACACGCGTGCGGATTACTGAACGTCTCTGGG : 1831 vulgar: gi|452887643|gb|AGG17938.1| 141 217 . LHQN01025741.1 1603 1831 + 101 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1604 1831 101 + . gene_id 2 ; sequence gi|452887643|gb|AGG17938.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1604 1831 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1604 1831 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1604 1831 101 + . alignment_id 2 ; Query gi|452887643|gb|AGG17938.1| ; Align 1604 142 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722542|gb|AKO90014.1| odorant receptor 50 [Microplitis mediator] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 128 -> 215 Target range: 4981 -> 5242 129 : TyrIleTyrSerIleAlaValValPheAlaSerIleProValLeuSerLysValLeuAspLe : 149 :!!|||! ! ! !|||!.!:!!||| !!!!:!:||| !!:!!||| !:!!||||||:! HisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIl 4982 : CATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACAT : 5042 150 : uIleAlaProLeuAsnGluSerArgProLysValTyrLeuTyrProAlaGluTyrPheValA : 170 !:!! !||||||||||||!!!||| !!::!:!!!:!:!!||||||||| ! |||||||||| eLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValA 5043 : CCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCG : 5105 171 : spGlnAspLysTyrSerThrTyrIleTyrIleHisGlyTyrMetAlaLeuProIleThrMet : 190 ||:!!||||||||| ! !! ||| ||| !|||:!:!.!:!! !!!: !!!: spGluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIle 5106 : ACGAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATC : 5165 191 : ThrLeuCysThrAlaTyrAspPheLeuTyrSerAlaCysGlyHisHisValCysSerMetPh : 211 :!!:!!! ! !|||! !||| ! !||| ! !..!! !!!.|||!.!|||.!!:!!!! SerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLe 5166 : TCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTT : 5228 212 : eLysIleAlaGly : 215 . ||||||||| uAlaIleAlaGly 5229 : GGCCATTGCAGGG : 5242 vulgar: gi|861722542|gb|AKO90014.1| 128 215 . LHQN01025741.1 4981 5242 + 174 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4982 5242 174 + . gene_id 1 ; sequence gi|861722542|gb|AKO90014.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4982 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4982 5242 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4982 5242 174 + . alignment_id 1 ; Query gi|861722542|gb|AKO90014.1| ; Align 4982 129 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722542|gb|AKO90014.1| odorant receptor 50 [Microplitis mediator] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 134 -> 215 Target range: 1588 -> 1831 135 : ValValPheAlaSerIleProValLeuSerLysValLeuAspLeuIleAlaProLeuAsnGl : 155 |||:!!|||.!!|||:!: !!:!! ! !!:::|||||||||||||||:!!||| !||||| ValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGl 1589 : GTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGA : 1649 156 : uSerArgProLysValTyrLeuTyrProAlaGluTyrPheValAspGlnAspLysTyrSerT : 176 ||||||| ! ! !!:!:!!||||||||| ! ||| !:!!|||:!!!!::!!:!!! ! uSerArgGlyValAspPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHisTyrT 1650 : ATCGCGTGGGGTTGACTTCATTTATCCTGCATACTACGGTCTCGACGAGGAGGAACATTATT : 1712 177 : hrTyrIleTyrIleHisGlyTyrMetAlaLeuProIleThrMetThrLeuCysThrAlaTyr : 196 ! !:!: !||| ! ! !.!:!! !!:!!..!.!. !:!!! !! !:!!! ! yrIleLeuMetGlyHisMetLeuCysValIleThrValValPhePheValTyrIleSerCys 1713 : ACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTCTACATCTCCTGT : 1772 197 : AspPheLeuTyrSerAlaCysGlyHisHisValCysSerMetPheLysIleAlaGly : 215 ||| :!!|||! ! ! !! !!!.|||!.!|||.!!:!:.!.!!.:!!:!!||| AspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnValSerGly 1773 : GACACGATCTACATGAATATCGTGCAACACGCGTGCGGATTACTGAACGTCTCTGGG : 1831 vulgar: gi|861722542|gb|AKO90014.1| 134 215 . LHQN01025741.1 1588 1831 + 131 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1589 1831 131 + . gene_id 2 ; sequence gi|861722542|gb|AKO90014.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1589 1831 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1589 1831 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 1589 1831 131 + . alignment_id 2 ; Query gi|861722542|gb|AKO90014.1| ; Align 1589 135 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887641|gb|AGG17937.1| olfactory receptor 4 [Microplitis mediator] Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 154 -> 218 Target range: 1176 -> 987 155 : GlnAsnGluThrIleProLysArgPheSerIleProIleTyrTrpLysThrProAspIleGl : 175 |||||| !||| ! ! !! ! !! !:!!||| !|||!:: ..! !!!::!!|| GlnAsnIleThrProSerLeuProValValValProGlyTyrTyrPheValAspGluValGl 1176 : CAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACGAAGTAGA : 1116 176 : uLysTyrTyrTyrTyrLeuIleSerPheGlnThrLeuAsnThrAsnPheIleIleSerIleT : 196 | ||||||||||||:!!||| ! ! !|||! !!....! .!!:!!:!: !:!: u---TyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeuIleValValValValT 1115 : A---TACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGT : 1056 197 : hrCysAlaSerAspAlaMetPheIleAsnLeuLeuGlnHisValThrGlyLeuPheSerVal : 216 !||||||!!!|||.!!! !:!!!: |||:!!||||||..! !|||||||||:!!||| yrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaVal 1055 : ACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTG : 996 217 : ThrGly : 218 .!!||| AlaGly 995 : GCCGGG : 988 vulgar: gi|452887641|gb|AGG17937.1| 154 218 . LHQN01027734.1 1176 987 - 102 M 21 63 G 1 0 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 988 1176 102 - . gene_id 1 ; sequence gi|452887641|gb|AGG17937.1| ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 988 1176 . - . LHQN01027734.1 exonerate:protein2genome:local exon 988 1176 . - . insertions 0 ; deletions 1 LHQN01027734.1 exonerate:protein2genome:local similarity 988 1176 102 - . alignment_id 1 ; Query gi|452887641|gb|AGG17937.1| ; Align 1177 155 63 ; Align 1114 177 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887639|gb|AGG17936.1| olfactory receptor 3 [Microplitis mediator] Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 134 -> 216 Target range: 1230 -> 987 135 : IleIleTyrIleMetAspProValLeuSerAlaIleValAsnIleIleSerLysSerAsnAs : 155 .!!:!:!:!|||...! ||| ! !!!! !!!:|||||| !!.!! !..!||| PheLeuPheIleGlnValProTrpThrThrArgMetValAsnSerTyrLysThrGlnAsnIl 1230 : TTCTTGTTCATACAAGTGCCATGGACGACCCGAATGGTGAACTCGTACAAGACACAGAATAT : 1170 156 : pSerMetProLeuLysPheSerValProMetArgPheIleMetPheAspGluGluLysTyrT : 176 !!! !||| ! !! !|||||| !!!:! !.!. !!||||||! !:!!|||| eThrProSerLeuProValValValPro---GlyTyrTyrPheValAspGluValGluTyrT 1169 : AACGCCAAGTTTGCCAGTCGTCGTACCC---GGATATTACTTCGTCGACGAAGTAGAATACT : 1110 177 : yrTrpLeuLeuLeuIleLeuSerAsnThrCysValIlePheIleIleAsnValIleIleCys : 196 ||!::! !:!!:!!:!!! !.!!!.. ! |||:!:.!!:!!:!: ||| ! !..! yrTyrTyrIleIleLeuHisGlyThrCysThrValLeuIleValValValValTyrCysAla 1109 : ATTATTACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTGGTGGTGTACTGTGCC : 1050 197 : CysAspValIlePheIleThrValValGlnHisValCysGlyIlePheAlaValValGly : 216 ||||||..!! !!:!!!:..!:!!|||||||||..!||||||:!:|||||||||!.!||| CysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPheAlaValAlaGly 1049 : TGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTTCGCCGTGGCCGGG : 988 vulgar: gi|452887639|gb|AGG17936.1| 134 216 . LHQN01027734.1 1230 987 - 118 M 30 90 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 988 1230 118 - . gene_id 1 ; sequence gi|452887639|gb|AGG17936.1| ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 988 1230 . - . LHQN01027734.1 exonerate:protein2genome:local exon 988 1230 . - . insertions 0 ; deletions 1 LHQN01027734.1 exonerate:protein2genome:local similarity 988 1230 118 - . alignment_id 1 ; Query gi|452887639|gb|AGG17936.1| ; Align 1231 135 90 ; Align 1141 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722533|gb|AKO90011.1| odorant receptor 47 [Microplitis mediator] Target: LHQN01027980.1 Habropoda laboriosa contig27980, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 174 Query range: 14 -> 155 Target range: 453 -> 36 15 : ValAsnSerLysTyrAlaLeuAspAlaAsnArgTrpIleLeuLysIleLeuGlyValTrpHisP : 36 !.!!:!||| ! |||::!|||.!. !||||||||| :!!|||! !:!!|||..!||| AlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrp---- 453 : GCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGG---- : 393 37 : heAlaIleAspSerSerTyrPheHisLysValIleAlaLeuCysHisIleIleIleCysThrPh : 57 !! !|||||| !!.!!.!.!:! !|||:!!! ! ! !:!:|||||| ! --ProGlnPheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrTh 392 : --CCACAGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACAC : 333 58 : eLeuLeuSerPheValValIleProGlyIleLeuPheIlePheValIleValLysAspValThr : 78 ! !:!! !||| !:!!|||||| !! ||| !:!!.!.:!! ! ! ! ! !! ! rAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyr 332 : CGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTAC : 270 79 : ThrArgLeuArgIleSerGlyValPheSerPheCysValMetGlyValIleLysTyrTyrTyrL : 100 |||!:!:!!!:!||| !||| !!!.||| !!! |||.!. !!:!!|||!..||| ! | ThrLysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetL 269 : ACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGC : 204 101 : euIleLysSerAsnLysGlnIleGlyAsnCysValLysGlnPheAsnSerAspTrpAlaGlnIl : 121 ||:!: ! !!..!||| ||| !:!!! !|||!!.!!..!..!.!!!|||||| ! !! euLeuLeuArgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrTh 203 : TGTTGCTGCGACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGAC : 141 122 : eAsnAspIleLysAspLysThrIleMetValLysTyrAlaArgPheGlyArgAsnSerSerIle : 142 ... ::: ||| :::|||:!!|||||||||!:!|||.!!||| !!:!!:!!||| rThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIle 140 : GacgagaaaggagaagaaagaagtcATGCTGAAGTACGCAAAATTTAGTCGATACGCGGCGATT : 78 143 : IleCysAlaAlaPheMetTyrGlySerCysMetPheTyr : 155 .!!|||||| !|||!!::!!|||.!! :!: ||| PheCysAlaIlePheIleHisGlyGlyIleLeuGlyTyr 77 : TTTTGTGCGATCTTCATACACGGTGGTATACTTGGATAT : 37 vulgar: gi|861722533|gb|AKO90011.1| 14 155 . LHQN01027980.1 453 36 - 174 M 20 60 G 2 0 M 119 357 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027980.1 exonerate:protein2genome:local gene 37 453 174 - . gene_id 1 ; sequence gi|861722533|gb|AKO90011.1| ; gene_orientation . LHQN01027980.1 exonerate:protein2genome:local cds 37 453 . - . LHQN01027980.1 exonerate:protein2genome:local exon 37 453 . - . insertions 0 ; deletions 2 LHQN01027980.1 exonerate:protein2genome:local similarity 37 453 174 - . alignment_id 1 ; Query gi|861722533|gb|AKO90011.1| ; Align 454 15 60 ; Align 394 37 357 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722533|gb|AKO90011.1| odorant receptor 47 [Microplitis mediator] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 203 Query range: 14 -> 242 Target range: 1082 -> 401 15 : ValAsnSerLysTyrAlaLeuAspAlaAsnArgTrpIleLeuLysIleLeuGlyValTrpHi : 35 !.!!:!||| ! |||::!|||.!. !||||||||| :!!|||! !:!!|||!.!||| AlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrp-- 1082 : GCTAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGG-- : 1022 36 : sPheAlaIleAspSerSerTyrPheHisLysValIleAlaLeuCysHisIleIleIleCysT : 56 !! ..!|||||| !!.!!.!.!:!:!!|||:!!! ! ! !:!:|||||| ----ProGlnSerSerSerAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysT 1021 : ----CCACAGTCCTCGTCGAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCT : 965 57 : hrPheLeuLeuSerPheValValIleProGlyIleLeuPheIlePheValIleValLysAsp : 76 ! ! !:!! !|||..!:!!|||||| !! ||| !:!!.!.:!! ! !:!! ! yrThrAlaValLeuPheThrIleIleProCysSerLeuHisValMetLeuGluLysGluThr 964 : ACACCGCAGTACTATTCACGATAATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACT : 905 77 : ValThrThrArgLeuArgIleSerGlyValPheSerPheCysValMetGlyValIleLysTy : 97 !! !|||!:!:!!!:!||| !||| !!!.||| !!! |||.!. !!:!!|||!..|| PheTyrThrLysValLysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTy 904 : TTCTACACGAAAGTGAAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTA : 842 98 : rTyrTyrLeuIleLysSerAsnLysGlnIleGlyAsnCysValLysGlnPheAsnSerAspT : 118 | ! |||:!: ! !!..!||| ||| !!:!!! ! !!!!.!!..!..!.!!!|||| rThrMetLeuLeuLeuArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspT 841 : CACCATGCTGTTGCTGCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATT : 779 119 : rpAlaGlnIleAsnAspIleLysAspLysThrIleMetValLysTyrAlaArgPheGlyArg : 138 || ! !! ! ::: ||| ||||||:!!|||||||||!:!|||.!!||| rpArgThrThrMetArgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArg 778 : GGAGAACGACGAtgagaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGA : 719 139 : AsnSerSerIleIleCysAlaAlaPheMetTyrGlySerCysMetPheTyrAlaCysIleLe : 159 !!:!!:!!||| !|||.!! !|||!!::!!|||.!! :!: |||..! !!!: TyrAlaAlaIleSerCysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetTh 718 : TACGCGGCGATTTCTTGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGAC : 656 160 : uProHisValSerGlyValPheLysAsnLysAsnAspPro<->ThrGluArgThrPheAlaT : 179 ! !! !..!!!! !||| !! ! ! !|||!!: !! ! ! !|||..!.!. !!! rAlaPheThrThrMetValValValValGlyAsnGluThrMetIleLeuArgValLeuProL 655 : AGCGTTCACCACGATGGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGT : 593 180 : yrProCysHisPheIleValPheAsnGlnTyrGluSerProAlaTyrGluIleValPheSer : 199 ||| :!! :!!.!! !! !!:! !! ! !!|||||||||.!!! ! euProMetTyrLysGlyLeuLeuProValAspThrAsnThrMetAsnGluIleValLeuLeu 592 : TACCAATGTACAAAGGGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTTCTTTTG : 533 200 : IleHisCysCysCysAlaPheValLeuAlaSerIleSerAsnAlaAlaCysAsnLeuIleTh : 220 !!!.! ! !! !!.!|||:!! ! !!!!! !:!!! !::!!.! !:!|||! !!: SerGlnPheLeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSe 532 : TCACAGTTTCTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAG : 470 221 : rValLeuIleThrHisAlaCysGlyGlnLeuGluIleLeuMetValTrpLeuAsnAspLeuA : 241 !!.!|||! !:!!||||||! !|||||||||! :!::!!|||:!!! !:!!.!.|||!!!! rAlaLeuThrSerHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheV 469 : TGCTCTAACATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTG : 407 242 : spSer : 242 ||| alSer 406 : TGAGT : 402 vulgar: gi|861722533|gb|AKO90011.1| 14 242 . LHQN01028641.1 1082 401 - 203 M 20 60 G 2 0 M 136 408 G 0 3 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 402 1082 203 - . gene_id 1 ; sequence gi|861722533|gb|AKO90011.1| ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 402 1082 . - . LHQN01028641.1 exonerate:protein2genome:local exon 402 1082 . - . insertions 3 ; deletions 2 LHQN01028641.1 exonerate:protein2genome:local similarity 402 1082 203 - . alignment_id 1 ; Query gi|861722533|gb|AKO90011.1| ; Align 1083 15 60 ; Align 1023 37 408 ; Align 612 173 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887643|gb|AGG17938.1| olfactory receptor 5 [Microplitis mediator] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 141 -> 217 Target range: 5648 -> 5420 142 : LeuProLeuIleProValThrLeuAspIleIleLeuProLeuAsnGluSerArgProLysIl : 162 ||||||!!!:!: !! !! !|||||||||:!!:!!||||||||||||!!!||| !!::!:! LeuProPheValSerProIleLeuAspIleLeuMetProLeuAsnGluThrArgAlaArgLe 5648 : TTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAACGAGACGCGAGCACGGTT : 5588 163 : eGluLeuTyrHisThrAspTyrLeuPheGlyProValLysTyrSerTrpValIleSerLeuH : 183 : :!!|||! .!! !!|||!!! !!! ! !! !|||||| !!!:::!!||| ! !| uPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrArgTyrLeuIleValGlyH 5587 : GTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCGTTACTTGATCGTAGGGC : 5525 184 : isGlnCysIleIleSerProPheProThrIleIleIleIleAlaThrGlySerLeuTyrCys : 203 ||..!! !:!!:!! ! !.!.! !! ! !:!!.!! !||| !! !:!! !||| isMetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrVal 5524 : ATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTG : 5465 204 : AsnCysCysGlnHisAlaCysGlyMetPheGluValIleGly : 217 !!..! |||||||||||||||:!!!!.! :!! !||| TyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5464 : TACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5421 vulgar: gi|452887643|gb|AGG17938.1| 141 217 . LHQN01028732.1 5648 5420 - 119 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5648 119 - . gene_id 1 ; sequence gi|452887643|gb|AGG17938.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5648 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5648 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5648 119 - . alignment_id 1 ; Query gi|452887643|gb|AGG17938.1| ; Align 5649 142 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887639|gb|AGG17936.1| olfactory receptor 3 [Microplitis mediator] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 129 -> 216 Target range: 5678 -> 5420 130 : ValAsnMetGlyValIleIleTyrIleMetAspProValLeuSerAlaIleValAsnIleIl : 150 :!!::::!: !!!.! !:!!!:!!!: ||| !!:!!||| !!|||:!!:!!|||:! IleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLe 5678 : ATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCT : 5618 151 : eSerLysSerAsnAspSerMetProLeuLysPheSerValProMetArgPheIleMetPheA : 171 !! ! !! !|||!!:!!! !!! ! !||| ! !||| !!:!.!!:!: | uMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheVal---A 5617 : TATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTC---G : 5558 172 : spGluGluLysTyrTyrTrpLeuLeuLeuIleLeuSerAsnThrCysValIlePheIleIle : 191 |||||!!:|||||| !!::|||:!!:!! ! !! ! !! ! |||:!!.!.:!!||| spGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIle 5557 : ACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATC : 5498 192 : AsnValIleIleCysCysAspValIlePheIleThrValValGlnHisValCysGlyIlePh : 212 ::!|||.!! !..!||||||!.!! !!:!:!: !!.!|||||||||!.!||||||:!:!! SerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLe 5497 : TCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTT : 5435 213 : eAlaValValGly : 216 .|||:!!!.!||| uAlaIleAlaGly 5434 : GGCCATTGCAGGG : 5421 vulgar: gi|452887639|gb|AGG17936.1| 129 216 . LHQN01028732.1 5678 5420 - 117 M 40 120 G 1 0 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5678 117 - . gene_id 1 ; sequence gi|452887639|gb|AGG17936.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5678 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5678 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5678 117 - . alignment_id 1 ; Query gi|452887639|gb|AGG17936.1| ; Align 5679 130 120 ; Align 5559 171 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722542|gb|AKO90014.1| odorant receptor 50 [Microplitis mediator] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 174 Query range: 128 -> 215 Target range: 5681 -> 5420 129 : TyrIleTyrSerIleAlaValValPheAlaSerIleProValLeuSerLysValLeuAspLe : 149 :!!|||! ! ! !|||!.!:!!||| !!!!:!:||| !!:!!||| !:!!||||||:! HisIleSerLeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIl 5681 : CATATATCGTTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACAT : 5621 150 : uIleAlaProLeuAsnGluSerArgProLysValTyrLeuTyrProAlaGluTyrPheValA : 170 !:!! !||||||||||||!!!||| !!::!:!!!:!:!!||||||||| ! |||||||||| eLeuMetProLeuAsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValA 5620 : CCTTATGCCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCG : 5558 171 : spGlnAspLysTyrSerThrTyrIleTyrIleHisGlyTyrMetAlaLeuProIleThrMet : 190 ||:!!||||||||| !! !! ||| ||| !|||:!:!.!:!! !!!: !!!: spGluAspLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIle 5557 : ACGAGGACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATC : 5498 191 : ThrLeuCysThrAlaTyrAspPheLeuTyrSerAlaCysGlyHisHisValCysSerMetPh : 211 :!!:!!! ! !|||! !||| ! !||| ! !..!! !!!.|||!.!|||.!!:!!!! SerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLe 5497 : TCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTT : 5435 212 : eLysIleAlaGly : 215 . ||||||||| uAlaIleAlaGly 5434 : GGCCATTGCAGGG : 5421 vulgar: gi|861722542|gb|AKO90014.1| 128 215 . LHQN01028732.1 5681 5420 - 174 M 87 261 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5681 174 - . gene_id 1 ; sequence gi|861722542|gb|AKO90014.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5681 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5681 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5681 174 - . alignment_id 1 ; Query gi|861722542|gb|AKO90014.1| ; Align 5682 129 261 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722533|gb|AKO90011.1| odorant receptor 47 [Microplitis mediator] Target: LHQN01028951.1 Habropoda laboriosa contig28951, whole genome shotgun sequence Model: protein2genome:local Raw score: 174 Query range: 14 -> 155 Target range: 417 -> 834 15 : ValAsnSerLysTyrAlaLeuAspAlaAsnArgTrpIleLeuLysIleLeuGlyValTrpHisP : 36 !.!!:!||| ! |||::!|||.!. !||||||||| :!!|||! !:!!|||..!||| AlaSerSerAspTyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyThrTrp---- 418 : GCCAGCAGCGATTACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCACATGG---- : 478 37 : heAlaIleAspSerSerTyrPheHisLysValIleAlaLeuCysHisIleIleIleCysThrPh : 57 !! !|||||| !!.!!.!.!:! !|||:!!! ! ! !:!:|||||| ! --ProGlnPheSerSerAsnLeuGluArgAsnIleSerArgIleLeuAsnValIleCysTyrTh 479 : --CCACAGTTCTCGTCGAACCTCGAGAGAAACATCTCTCGAATATTAAACGTGATCTGCTACAC : 538 58 : eLeuLeuSerPheValValIleProGlyIleLeuPheIlePheValIleValLysAspValThr : 78 ! !:!! !||| !:!!|||||| !! ||| !:!!.!.:!! ! ! ! ! !! ! rAlaIleLeuPheSerIleIleProCysSerLeuHisLeuMetLeuGluLysGlyThrPheTyr 539 : CGCAATACTATTCTCGATAATCCCTTGTTCGTTGCACCTAATGCTGGAAAAAGGGACTTTCTAC : 601 79 : ThrArgLeuArgIleSerGlyValPheSerPheCysValMetGlyValIleLysTyrTyrTyrL : 100 |||!:!:!!!:!||| !||| !!!.||| !!! |||.!. !!:!!|||!..||| ! | ThrLysValLysIleLeuGlySerLeuSerHisTrpValPheCysIleIleSerTyrThrMetL 602 : ACGAAAGTGAAAATACTCGGTTCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGC : 667 101 : euIleLysSerAsnLysGlnIleGlyAsnCysValLysGlnPheAsnSerAspTrpAlaGlnIl : 121 ||:!: ! !!..!||| ||| !:!!! !|||!!.!!..!..!.!!!|||||| ! !! euLeuLeuArgArgLysThrIleHisHisPheValAsnHisMetGluThrAspTrpArgThrTh 668 : TGTTGCTGCGACGTAAAACCATACATCACTTTGTCAATCATATGGAGACCGATTGGAGAACGAC : 730 122 : eAsnAspIleLysAspLysThrIleMetValLysTyrAlaArgPheGlyArgAsnSerSerIle : 142 ... ::: ||| :::|||:!!|||||||||!:!|||.!!||| !!:!!:!!||| rThrArgLysGluLysLysGluValMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIle 731 : GacgagaaaggagaagaaagaagtcATGTTGAAGTACGCGAAATTTAGTCGATACGCGGCGATT : 793 143 : IleCysAlaAlaPheMetTyrGlySerCysMetPheTyr : 155 .!!|||||| !|||!!::!!|||.!! :!: ||| PheCysAlaIlePheIleHisGlyGlyIleLeuGlyTyr 794 : TTTTGTGCGATTTTCATACACGGTGGTATACTTGGATAT : 834 vulgar: gi|861722533|gb|AKO90011.1| 14 155 . LHQN01028951.1 417 834 + 174 M 20 60 G 2 0 M 119 357 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028951.1 exonerate:protein2genome:local gene 418 834 174 + . gene_id 1 ; sequence gi|861722533|gb|AKO90011.1| ; gene_orientation . LHQN01028951.1 exonerate:protein2genome:local cds 418 834 . + . LHQN01028951.1 exonerate:protein2genome:local exon 418 834 . + . insertions 0 ; deletions 2 LHQN01028951.1 exonerate:protein2genome:local similarity 418 834 174 + . alignment_id 1 ; Query gi|861722533|gb|AKO90011.1| ; Align 418 15 60 ; Align 478 37 357 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722542|gb|AKO90014.1| odorant receptor 50 [Microplitis mediator] Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 122 -> 215 Target range: 430 -> 709 123 : IleSerValTyrValPheTyrIleTyrSerIleAlaValValPheAlaSerIleProValLeuS : 144 .!!|||:!! ! ! ! !:! !!:!! !:!! !:!!! !|||!.!! !:!:! !:!!||| PheSerIleIleProValPheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuP 431 : TTTTCCATTATTCCAGTGTTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCC : 494 145 : erLysValLeuAspLeuIleAlaProLeuAsnGluSerArgProLysValTyrLeuTyrProAl : 165 !!:!!:!!|||! !:!!|||:!!||||||!.!|||! !!.! !!!!. !! ||| !! !.! roGlnIleLeuGlyIleIleSerProLeuThrGluIleAsnThrAsnLysLeuLeuValArgTh 495 : CGCAAATTTTAGGCATAATTTCACCTCTAACCGAGATCAATACTAACAAATTACTCGTTCGAAC : 557 166 : aGluTyrPheValAspGlnAspLysTyrSerThrTyrIleTyrIleHisGlyTyrMetAlaLeu : 186 !||||||||||||||| ! ! ! |||! ! ! ||| ||||||!.! !!!:|||:!! rGluTyrPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAlaThrIleAlaIle 558 : CGAATACTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCGACTATAGCAATA : 620 187 : ProIleThrMetThrLeuCysThrAlaTyrAspPheLeuTyrSerAlaCysGlyHisHisValC : 208 ! !!:!:!!|||:!! ! !::! !|||...||| ::: ! |||:!! MetCysSerValThrMetGlnIleSerSerAspIleLeuAsnAsnIlePheMetMetHisIleS 621 : ATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaataacatatttatGATGCACATCA : 686 209 : ysSerMetPheLysIleAlaGly : 215 !!.!!||||||:!!:!! !||| erGlyMetPheGluValIleGly 687 : GTGGAATGTTCGAGGTAATTGGG : 709 vulgar: gi|861722542|gb|AKO90014.1| 122 215 . LHQN01050134.1 430 709 + 118 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 431 709 118 + . gene_id 1 ; sequence gi|861722542|gb|AKO90014.1| ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 431 709 . + . LHQN01050134.1 exonerate:protein2genome:local exon 431 709 . + . insertions 0 ; deletions 0 LHQN01050134.1 exonerate:protein2genome:local similarity 431 709 118 + . alignment_id 1 ; Query gi|861722542|gb|AKO90014.1| ; Align 431 123 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|452887643|gb|AGG17938.1| olfactory receptor 5 [Microplitis mediator] Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 133 -> 217 Target range: 457 -> 709 134 : IleAlaIleLeuPheLeuValPheLeuProLeuIleProValThrLeuAspIleIleLeuProL : 155 :!: !:!!||| !!!!|||||||||! !:!!:!!||| !! !|||! !||||||! !|||| LeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuProGlnIleLeuGlyIleIleSerProL 458 : TTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAATTTTAGGCATAATTTCACCTC : 521 156 : euAsnGluSerArgProLysIleGluLeuTyrHisThrAspTyrLeuPheGlyProValLysTy : 176 ||!.!|||! !!.! !!!!.! ! !||| !!..|||!!:|||!!! !!! ! ! ! ! || euThrGluIleAsnThrAsnLysLeuLeuValArgThrGluTyrPheValAspTyrLysAspTy 522 : TAACCGAGATCAATACTAACAAATTACTCGTTCGAACCGAATACTTTGTCGACTACAAAGATTA : 584 177 : rSerTrpValIleSerLeuHisGlnCysIleIleSerProPheProThrIleIleIleIleAla : 197 |! !!:::!!|||!!!:!!||| ! !||| !! ! !! ! !..!! !!!: !|||::! rIleTyrLeuIleThrIleHisAlaThrIleAlaIleMetCysSerValThrMetGlnIleSer 585 : CATTTATCTAATCACGATCCACGCGACTATAGCAATAATGTGTAGTGTGACTATGCAAATTAGC : 647 198 : ThrGlySerLeuTyrCysAsnCysCysGlnHisAlaCysGlyMetPheGluValIleGly : 217 !:!! !! ||| ..!||| ! !!||||||||||||||||||||| SerAspIleLeuAsnAsnIlePheMetMetHisIleSerGlyMetPheGluValIleGly 648 : AGCGATAttttgaataacatatttatGATGCACATCAGTGGAATGTTCGAGGTAATTGGG : 709 vulgar: gi|452887643|gb|AGG17938.1| 133 217 . LHQN01050134.1 457 709 + 102 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 458 709 102 + . gene_id 1 ; sequence gi|452887643|gb|AGG17938.1| ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 458 709 . + . LHQN01050134.1 exonerate:protein2genome:local exon 458 709 . + . insertions 0 ; deletions 0 LHQN01050134.1 exonerate:protein2genome:local similarity 458 709 102 + . alignment_id 1 ; Query gi|452887643|gb|AGG17938.1| ; Align 458 134 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722503|gb|AKO90003.1| odorant receptor 39 [Microplitis mediator] Target: KQ414573.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold16, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 193 Query range: 39 -> 168 Target range: 650504 -> 648660 40 : AlaLysMetLysLysLeuLeuLeuThrMetGluGluAspTrpLysIleTyrAlaSer< : 59 |||:!!|||!:! ! |||||| !! !|||:!!|||||||||!:!|||||| !!.! AlaGlnMetArgTyrLeuLeuAsnIleMetGlnGluAspTrpArgIleTyrLysLysV 650504 : GCACAGATGAGGTATTTATTGAATATAATGCAAGAGGATTGGAGGATATATAAGAAAG : 650447 60 : ->GlyProGluAsnLysIleLeuAsnGluTyrAlaHisPheGlyArgLysValThrIl : 77 ! !||| ! ! :!!||| !||| ! ! ! |||!:!|||:!!|||! alLysAsnGluPheAspValLeuCysGluGlnTyrAlaValGlyLysLysLeuThrTh 650446 : TAAAGAACGAGTTTGACGTTCTTTGTGAACAATATGCAGTAGGAAAGAAGCTTACTAC : 650390 78 : eTyrTyrThr{G} >>>> Target Intron 1 >>>> {ly}AlaLeuTyrGly : 85 ! !!:!.!!{!} 1457 bp {.!} !|||!:!||| rSerPheAla{A}++ ++{la}PheLeuPheGly 650389 : TAGTTTTGCA{G}gt.........................ag{CT}TTTTTATTCGGA : 648909 86 : ThrLeuAlaProLeuValLeuValProIleThrProLeuIleLeuAspValIleAlaP : 105 !:!!.!!|||!!!!.! !:!!|||:!! !! ! ! ! !|||..!:!!!.! LeuIleThrProPheAlaAlaMetProLeuLeuLeuAsnAlaAlaAspThrLeuGlyP 648908 : TTAATAACACCGTTTGCGGCAATGCCATTACTGCTGAATGCAGCTGACACTTTAGGAT : 648849 106 : roMetAsnGluSerTyrProLysHisLeuMetPheGlnGlnIleGluPheLeuValAs : 124 !! |||! !||| ! !::!! |||:!:||| !:!:!!||| !!!!||||| heSerAsnValSerSerAspArgProLeuValPhe---ArgValGluHisPheValAs 648848 : TCAGCAATGTGTCCAGCGATCGACCGTTGGTATTT---CGAGTTGAACATTTCGTGGA : 648795 125 : pAlaAspLysTyrPhePheProLeuPheIleHisAsnTyrMetGlyThrValAlaPhe : 143 |!.!|||||||||!:!!:! !!|||!!.:!:|||:::|||.!.||||||:!!|||||| pValAspLysTyrTyrTyrThrLeuLeuValHisSerTyrPheGlyThrIleAlaPhe 648794 : TGTGGACAAATACTACTATACCCTTTTAGTGCATTCATACTTTGGTACTATAGCATTT : 648738 144 : LeuThrIleIleIleAlaIleAspThrMetLeuMetValTyrIleGlnHisGlyCysA : 163 !.!!|||:!!:!!:!!|||:!!:!!!!::!! ||||||:!!! !|||! !|||! ThrAlaIleValValSerIleAsnSerIleIleAlaValTyrValLeuHisGluCysG 648737 : ACTGCGATTGTTGTCTCTATCAACTCGATAATAGCTGTGTACGTCCTACACGAATGCG : 648678 164 : laLysPheAlaIleLeu : 168 .! ! !! !|||||| lyLeuCysGluIleLeu 648677 : GACTTTGTGAAATCTTA : 648661 vulgar: gi|861722503|gb|AKO90003.1| 39 168 . KQ414573.1 650504 648660 - 193 M 19 57 G 0 3 M 22 66 S 0 1 5 0 2 I 0 1453 3 0 2 S 1 2 M 35 105 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414573.1 exonerate:protein2genome:local gene 648661 650504 193 - . gene_id 1 ; sequence gi|861722503|gb|AKO90003.1| ; gene_orientation + KQ414573.1 exonerate:protein2genome:local cds 650378 650504 . - . KQ414573.1 exonerate:protein2genome:local exon 650378 650504 . - . insertions 3 ; deletions 0 KQ414573.1 exonerate:protein2genome:local splice5 650376 650377 . - . intron_id 1 ; splice_site "GT" KQ414573.1 exonerate:protein2genome:local intron 648921 650377 . - . intron_id 1 KQ414573.1 exonerate:protein2genome:local splice3 648921 648922 . - . intron_id 0 ; splice_site "AG" KQ414573.1 exonerate:protein2genome:local cds 648661 648920 . - . KQ414573.1 exonerate:protein2genome:local exon 648661 648920 . - . insertions 0 ; deletions 1 KQ414573.1 exonerate:protein2genome:local similarity 648661 650504 193 - . alignment_id 1 ; Query gi|861722503|gb|AKO90003.1| ; Align 650505 40 57 ; Align 650445 59 66 ; Align 648919 82 105 ; Align 648814 118 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722484|gb|AKO89997.1| odorant receptor 33 [Microplitis mediator] Target: KQ414583.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold34, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 314 -> 372 Target range: 620523 -> 620697 315 : LysLeuThrPheGluPheLeuAspIleSerThrGlyIleTyrAspThrAsnTrpTyrH : 334 ||| ! !|||:!! !:!!:!!|||!!! !!.! !||| !.!||||||!::| LysSerHisPheGlnSerMetAsnIleCysPheAlaAlaTyrMetAsnAsnTrpTrpH 620524 : aaatcACATTTTCAGAGCATGAATATATGTTTTGCCGCTTATATGAATAATTGGTGGC : 620581 335 : isLeuSerAsnAsnIleArgLysSerIleValIleIleLeuArgLysSerTyrArgPr : 353 || !!!!!!.:!!.!!!:!::!:!!:!::!!:!!:!!:!! !|||:!! ! ||||| isAsnThrLysAspPheLysArgAlaLeuLeuValValMetSerLysAlaGlnArgPr 620582 : ATAATACCAAGGATTTTAAACGAGCCTTGCTCGTTGTAATGTCAAAAGCTCAACGACC : 620638 354 : oValThrMetThrSerGlyPhePheIleValLeuSerLeuGluSerPheThrLysVal : 372 |:!!! !:!:||| !||| !.!!!!:! !||||||||||||!:!|||..! !||| oIleIleLeuThrValGlyAsnIleMetGluLeuSerLeuGluAsnPheValLeuVal 620639 : TATTATTTTAACTGTTGGAAATATTATGGAATTATCTTTAGAGAATTTCGTTCTAGTA : 620695 vulgar: gi|861722484|gb|AKO89997.1| 314 372 . KQ414583.1 620523 620697 + 107 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414583.1 exonerate:protein2genome:local gene 620524 620697 107 + . gene_id 1 ; sequence gi|861722484|gb|AKO89997.1| ; gene_orientation . KQ414583.1 exonerate:protein2genome:local cds 620524 620697 . + . KQ414583.1 exonerate:protein2genome:local exon 620524 620697 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local similarity 620524 620697 107 + . alignment_id 1 ; Query gi|861722484|gb|AKO89997.1| ; Align 620524 315 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: KQ414615.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold33, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 327 -> 377 Target range: 2576866 -> 2577016 328 : IleAsnAlaSerLeuSerAlaAlaLysTrpTyrAspTyrProGlnLysMetLysPr : 346 |||!:!.!!:!! !! !:!! !:!!|||! !.!. ||| :!:||| IleSerThrAlaAlaTyrSerIleGlnTrpCysGlnLeuProThrPheLeuLysAs 2576867 : ATAAGTACAGCTGCATATTCAATACAGTGGTGTCAACTGCCAACTTTTCTTAAAGA : 2576921 347 : oLeuIleIleLeuMetLeuMetArgGlyLysArgValSerThrValSerAlaGlyL : 365 ! !:!! !:!!!!::!!:!:|||..!:!!||| !||| !:!!!!!||||||| pGluValCysMetIleIleLeuArgSerGlnArgSerSerTyrIleThrAlaGlyL 2576922 : CGAAGTATGCATGATTATACTACGTTCTCAAAGATCTAGCTACATTACTGCGGGAA : 2576978 366 : ysIleTyrValMetSerIleGluAsnPheSerSerVal : 377 |||||||||||||| :::|||||||||::::::||| ysIleTyrValMetHisLeuGluAsnPheThrAlaVal 2576979 : AGATATATGTGAtgcatttggaaaatttcaccgcggta : 2577016 vulgar: gi|861722527|gb|AKO90009.1| 327 377 . KQ414615.1 2576866 2577016 + 101 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414615.1 exonerate:protein2genome:local gene 2576867 2577016 101 + . gene_id 1 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation . KQ414615.1 exonerate:protein2genome:local cds 2576867 2577016 . + . KQ414615.1 exonerate:protein2genome:local exon 2576867 2577016 . + . insertions 0 ; deletions 0 KQ414615.1 exonerate:protein2genome:local similarity 2576867 2577016 101 + . alignment_id 1 ; Query gi|861722527|gb|AKO90009.1| ; Align 2576867 328 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722506|gb|AKO90004.1| odorant receptor 40 [Microplitis mediator] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 203 Query range: 0 -> 235 Target range: 203429 -> 204233 1 : MetSerMetGlnTyrSerGlnAspPheLysTyrAlaLeuAlaTrpAsnArgThrSerL : 20 !!:|||:!!! !:!!!!! !||||||:!!!::|||:!! ! !||||||:!!|||| IleSerLeuLeuPheCysProAspPheGluTrpAlaValArgMetAsnArgSerSerL 203430 : ATTTCGTTGCTCTTTTGCCCAGACTTCGAATGGGCAGTTCGGATGAATCGCTCTAGTT : 203487 21 : euLysIleValGlyLeuTrpProGluAspAspAspGly<-><-><-><->IleIleTh : 35 ||!:!|||:!!||||||||| !|||!!:||| !!!.! ...::: euArgIleIleGlyLeuTrpPheGluGluAspHisAlaGlyThrMetLysPheLeuAr 203488 : TGAGAATAATTGGTCTTTGGTTTGAAGAAGATCACGCTggaacgatgaaatttttaag : 203544 36 : rLysSerLeuGlyTrpPheCysAlaCysLeuIleIleIleIleIleTyrLeuProGln : 54 ||| ..! ! !!.! :!!|||:!!.!!:!! ! |||||| gLysLeuArgAsnMetGlyIleValLeuIleIleLeuPheValCysValLeuProCys 203545 : aaaattacgcAATATGGGGATCGTGCTGATAATCCTCTTCGTTTGTGTACTTCCTTGC : 203601 55 : SerAlaSerValTyrValTyrTrpGlyAsnMetAspAlaValIleGluCysLeuSerV : 74 ! !|||:!! ! ! ! !! ! !!:!:!: |||||||||!!: !|||||| LeuTyrSerLeuIleLysGlnCysAspSerLeuMetAlaValIleAspAsnLeuSerT 203602 : CTCTACTCTTTGATCAAACAATGTGACAGTTTAATGGCGGTGATAGATAATCTTTCAT : 203661 75 : alAsnGlyProValPheIleThrIleValLysIleIleIlePheArgTyrTyrArgAr : 93 !!.! !|||:!! ||||||:!::!!||| !|||:!!.!. ! ! ! !::.. yrThrIleProLeuThrIleThrLeuMetLysTyrIleValIleLeuSerLysLysGl 203662 : ATACTATTCCTTTGACAATAACACTGATGAAGTATATCGTTATATTGAGTAAAAagga : 203718 94 : g{V} >>>> Target Intron 1 >>>> {al}LeuLysArgValIleAspThr : 101 .{|} 93 bp {||}||| !! !:!!:!!:!!! ! u{V}++ ++{al}LeuLeuProLeuValAsnMet 203719 : a{g}gt.........................ag{TT}CTCTTGCCACTCGTAAACATG : 203835 102 : MetAlaGluAspTrpSerSerSerArgSerAsnGluGluTyrAlaValMetLeuLysT : 121 !!:||||||||||||:!!!.!! !!:!!!!:!! ||| ! !||||||:!!:!! IleAlaGluAspTrpAlaLysLeuLysThrAspPheGluArgAspValMetIleGlnA 203836 : ATCGCGGAAGATTGGGCAAAGTTGAAAACGGATTTCGAAAGAGACGTGATGATACAAC : 203895 122 : hrAlaLysIleSerArgAlaIleSerValThrSerThrIleIleThrAsnSerLeuPh : 140 !.!!::!|||!!!||||||! !|||:!! !||| ! :!!! ! !!!! ! rgThrArgIleThrArgAlaThrSerIleLeuSerTyrAlaLeuIlePheThrAla-- 203896 : GAACACGAATTACCCGAGCAACCAGTATACTGAGTTATGCGTTAATATTTACTGCA-- : 203952 141 : eValAlaTyrIlePhePheLysIleTrpGluGlyLeuGluMetSerLysArgThrAsp : 159 ||| !!:!!!:.!. !! ! ! ! |||:!! ! !!! ! !|||:!! -ValMetPheMetIleValLeuProArgThrGlyIleThrThrArgTyrValThrAsn 203953 : -GTAATGTTCATGATAGTCCTACCAAGAACCGGTATTACCACTAGATACGTAACAAAC : 204006 160 : LeuAspProArgLeuSerValGlyLeuLeuHisProAlaTyrPheProTyrAspThrL : 179 !!: !!!.!:!!!.! ! !!!!! ! |||...|||::: |||||| . ---GluThrAsnIleLysLysLeuPheProValProThrTyrTyrIleTyrAspIleS 204007 : ---GAAACCAACATAAAAAAGCTTTTTCCGGTGCCaacttattatatttacgatataT : 204063 180 : ysLysIleLysPhePheValProThrTrpIleAlaGlnLeuValAlaThrLeuPheSe : 198 ..:!!! ! !!:!|||! ! !! !!:::!! !|||:!!!.!.!! !:!!!!.! erGluThrProTyrPheGluIleMetPheLeuLeuGlnMetAlaThrLeuValLeuMe 204064 : CTGAAACTCCATATTTTGAGATAATGTTTCTCCTTCAAATGGCCACCTTAGTGTTAAT : 204120 199 : rMetThrAlaTyrAlaValPheAspThrPheValSerCysMetValLeuHisIleCys : 217 ! !..!||| !! ! !!|||!.!||| !!.!! :!!:!!|||||||||||| tAlaLeuCysTyrIleGlyValAspAsnPhePheGlyIleLeuIleLeuHisIleCys 204121 : GGCACTTTGTTACATTGGTGTCGATAATTTCTTTGGAATATTGATCCTTCATATTTGC : 204177 218 : GlyGlnLeuAlaValValGlyIleSerLeuGlnAsnLeuIleAsnGluAspThr : 235 |||||||||! ! !:!! !!! ! !!||| !|||:!!! !:!! !!!:||| GlyGlnLeuGluAsnLeuArgThrArgLeuAlaAsnIleLysHisLeuGluThr 204178 : GGCCAATTGGAAAATCTTCGTACACGACTTGCAAACATAAAACATTTGGAAACT : 204233 vulgar: gi|861722506|gb|AKO90004.1| 0 235 . KQ414617.1 203429 204233 + 203 M 32 96 G 0 12 M 61 183 S 0 1 5 0 2 I 0 89 3 0 2 S 1 2 M 45 135 G 1 0 M 19 57 G 1 0 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203430 204233 203 + . gene_id 1 ; sequence gi|861722506|gb|AKO90004.1| ; gene_orientation + KQ414617.1 exonerate:protein2genome:local cds 203430 203721 . + . KQ414617.1 exonerate:protein2genome:local exon 203430 203721 . + . insertions 12 ; deletions 0 KQ414617.1 exonerate:protein2genome:local splice5 203722 203723 . + . intron_id 1 ; splice_site "gt" KQ414617.1 exonerate:protein2genome:local intron 203722 203814 . + . intron_id 1 KQ414617.1 exonerate:protein2genome:local splice3 203813 203814 . + . intron_id 0 ; splice_site "AG" KQ414617.1 exonerate:protein2genome:local cds 203815 204233 . + . KQ414617.1 exonerate:protein2genome:local exon 203815 204233 . + . insertions 0 ; deletions 2 KQ414617.1 exonerate:protein2genome:local similarity 203430 204233 203 + . alignment_id 1 ; Query gi|861722506|gb|AKO90004.1| ; Align 203430 1 96 ; Align 203538 33 183 ; Align 203817 95 135 ; Align 203952 141 57 ; Align 204009 161 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722524|gb|AKO90008.1| odorant receptor 44 [Microplitis mediator] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 307 -> 379 Target range: 204724 -> 204940 308 : TyrPheMetIleAlaAsnPheCysIleIleSerGluHisLeuThrAlaGluSerAsnL : 327 :::||| ::: ! !!!!. ...||| |||:!! !:!!|||.!.: PhePheProLeuTyrTyrLeuSerSerPheSerIleSerLeuSerIleLysSerGluG 204725 : ttctttcctctatACTACTTgtcttcattttcaatttctttgtCGATAAAGTCCGAAG : 204782 328 : ysValCysGluAlaTyrTrpAsnCysGluTrpTyrAsnMetProGlnAspCysValLy : 346 !!|||! !! ||| !::.!.|||||||||! |||:!! !..!:!! !.!|| luValTyrValAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsnLysAlaLy 204783 : AAGTATACGTTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAACAAGGCGAA : 204839 347 : sAspIleIleTyrCysIleValArgSerGlnArgProLeuAlaLeuGlnAlaGlyLys : 365 |..!:!:|||! !!!:!.!|||:!!||||||||||||..!||| ||||||||| sSerLeuIleLeuIleMetAlaArgAlaGlnArgProLeuCysLeuThrAlaGlyLys 204840 : AAGTTTGATTTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGcaggaaaa : 204896 366 : PheSerThrPheSerIleValThrLeuThrAspValThrLys : 379 ... ...!!!!!::!!|||!!! !:!!||||||:!! LeuPheProMetThrMetLeuThrPheCysAsnValThrGln 204897 : ttatttcctatGACGATGCTAACGTTTTGCAACGTCACTCAG : 204940 vulgar: gi|861722524|gb|AKO90008.1| 307 379 . KQ414617.1 204724 204940 + 115 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204725 204940 115 + . gene_id 1 ; sequence gi|861722524|gb|AKO90008.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204725 204940 . + . KQ414617.1 exonerate:protein2genome:local exon 204725 204940 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204725 204940 115 + . alignment_id 1 ; Query gi|861722524|gb|AKO90008.1| ; Align 204725 308 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722530|gb|AKO90010.1| odorant receptor 46 [Microplitis mediator] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 141 Query range: 340 -> 407 Target range: 204733 -> 204934 341 : LeuPheValTyrSerTrpValGlyGluAsnLeuLeuSerHisSerGluGluIleHisV : 360 |||::! !! ||| ... :::||| !! ! ! |||||||||:!!:!!| LeuTyrTyrLeuSerSerPheSerIleSerLeuSerIleLysSerGluGluValTyrV 204734 : ctatACTACTTgtcttcattttcaatttctttgtCGATAAAGTCCGAAGAAGTATACG : 204791 361 : alAlaValTyrSerCysAsnTrpThrAspLeuGluProHisGlnIleAlaGlnLeuIl : 379 |||||!.!|||..!|||.!.||| !:!!|||:!! !!:!!:!! !...||||| alAlaAlaTyrGluCysGluTrpLeuAsnLeuLysSerAsnLysAlaLysSerLeuIl 204792 : TTGCTGCGTACGAATGCGAATGGTTGAATTTGAAATCGAACAAGGCGAAAAGTTTGAT : 204848 380 : eIleIleLeuValArgAlaGlnArgProLeuGluIleThrIleGlyLysPheAlaPro : 398 |:!!|||:!!!.!|||||||||||||||||| :!!||| ||||||... ||| eLeuIleMetAlaArgAlaGlnArgProLeuCysLeuThrAlaGlyLysLeuPhePro 204849 : TTTAATCATGGCAAGGGCCCAGAGGCCGCTCTGTTTAACCGcaggaaaattatttcct : 204905 399 : AlaThrLeuAsnThrPheAlaGlnIle : 407 !|||:!! ||||||..!.!.:!! MetThrMetLeuThrPheCysAsnVal 204906 : atGACGATGCTAACGTTTTGCAACGTC : 204934 vulgar: gi|861722530|gb|AKO90010.1| 340 407 . KQ414617.1 204733 204934 + 141 M 67 201 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 204734 204934 141 + . gene_id 1 ; sequence gi|861722530|gb|AKO90010.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 204734 204934 . + . KQ414617.1 exonerate:protein2genome:local exon 204734 204934 . + . insertions 0 ; deletions 0 KQ414617.1 exonerate:protein2genome:local similarity 204734 204934 141 + . alignment_id 1 ; Query gi|861722530|gb|AKO90010.1| ; Align 204734 341 201 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722530|gb|AKO90010.1| odorant receptor 46 [Microplitis mediator] Target: KQ414617.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold2, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 28 -> 119 Target range: 203450 -> 203720 29 : AspPheGluTrpAlaIleHisTyrHisArgLysValLeuLysPheCysGlyIleTrpI : 48 |||||||||||||||:!!!.. :!!|||... !|||!:!.!. !|||:!!||| AspPheGluTrpAlaValArgMetAsnArgSerSerLeuArgIleIleGlyLeuTrp- 203451 : GACTTCGAATGGGCAGTTCGGATGAATCGCTCTAGTTTGAGAATAATTGGTCTTTGG- : 203508 49 : leTyrSerAsnSerAsnArgTrpTyrLeuLysLeuIleThrAspLeuHisSerLeuPh : 67 !:!..!.!...!:!! ! :::|||...::: |||...!:!:!! --PheGluGluAspHisAlaGlyThrMetLysPheLeuArgLysLeuArgAsnMetGl 203509 : --TTTGAAGAAGATCACGCTggaacgatgaaatttttaagaaaattacgcAATATGGG : 203562 68 : eIleIleGlyGlyValLeuIleCysLeuThrThrProGluAlaMetAlaLeuValLys : 86 |||:!: ! !:!!|||.!! !! !..! !||| ! :!!|||:!!||| yIleValLeuIleIleLeuPheValCysValLeuProCysLeuTyrSerLeuIleLys 203563 : GATCGTGCTGATAATCCTCTTCGTTTGTGTACTTCCTTGCCTCTACTCTTTGATCAAA : 203619 87 : IleTrpGlyAsnLeuThrLeuIleValAspAsnLeuLeuSerSerAlaAlaLeuIleS : 106 !!! ! !!:!|||! ! !:!::!!|||||||||! !! !!!! ! !!|||! !! GlnCysAspSerLeuMetAlaValIleAspAsnLeuSerTyrThrIleProLeuThrI 203620 : CAATGTGACAGTTTAATGGCGGTGATAGATAATCTTTCATATACTATTCCTTTGACAA : 203679 107 : erThrGlnIleLysLeuPheValLeuTrpThrArgArgLys : 119 !|||! !!!:|||! !.!!|||:!!! !!:!!:!!::::: leThrLeuMetLysTyrIleValIleLeuSerLysLysGlu 203680 : TAACACTGATGAAGTATATCGTTATATTGAGTAAAAaggaa : 203720 vulgar: gi|861722530|gb|AKO90010.1| 28 119 . KQ414617.1 203450 203720 + 104 M 19 57 G 1 0 M 71 213 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414617.1 exonerate:protein2genome:local gene 203451 203720 104 + . gene_id 2 ; sequence gi|861722530|gb|AKO90010.1| ; gene_orientation . KQ414617.1 exonerate:protein2genome:local cds 203451 203720 . + . KQ414617.1 exonerate:protein2genome:local exon 203451 203720 . + . insertions 0 ; deletions 1 KQ414617.1 exonerate:protein2genome:local similarity 203451 203720 104 + . alignment_id 2 ; Query gi|861722530|gb|AKO90010.1| ; Align 203451 29 57 ; Align 203508 49 213 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722515|gb|AKO90005.1| odorant receptor 41 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 496 Query range: 15 -> 279 Target range: 1058508 -> 1056153 16 : SerValThrProGluThrAlaIleSerPheThrArgIleThrValTyrLeuThrCy : 34 |||:!!||||||||| !|||||||||||||||!:!:!:!:!||| !:!!||||| SerIleThrProGluGlnAlaIleSerPheThrLysLeuSerValAlaValThrCy 1058508 : AGTATAACGCCGGAACAAGCGATCTCGTTCACGAAACTGAGCGTCGCTGTAACTTG : 1058454 35 : sIleTrpSerProSerThrSerSerThrLysLeuThrPheIleLeuPheGluIleP : 53 | ||| !!|||||| !! !:!!|||!:! ! ! !!:!:||||||.!.! ! sSerTrpProProSerProLeuAlaThrArgThrGlnValLeuLeuPheAsnThrL 1058453 : TTCGTGGCCACCGTCACCTCTGGCGACCAGAACTCAAGTTTTGCTCTTTAATACGT : 1058397 54 : heLeuTrpPheSerIlePheLeuSerLeuGlyLeuLeuPheProLeuIleValSer : 71 !.! ! ! :!!.!! !! !!!!:!!!.!||||||!!.||||||:!: !.!! euTrpSerThrAlaPheValSerThrIleAlaLeuLeuLeuProLeuLeuSerGly 1058396 : TGTGGAGCACAGCATTCGTTAGCACCATCGCGCTGCTTTTGCCGCTATTGAGCGGA : 1058343 72 : IleIleLysPheIleAspAspThrPheValValMetLysSerPheIleLeuIleSe : 90 ||| !:!!!:! ! ! ||| !!.!!:!!:!! !|||!!! !!! !||| !|| IleTyrGluTyrArgLysAspProIleIleLeuGlyLysThrValSerLeuAlaSe 1058342 : ATTTACGAGTACCGTAAAGACCCCATCATTCTTGGGAAAACAGTCAGCCTCGCCTC : 1058286 91 : rGlyIleValAsnPheValIleLysValIleValCysArgIleTyrArgGlnGluL : 109 |!.!:!!!.!.!. ! !.!||||||:!!|||:!!||||||.!! ! !:!:!!:!!! rAlaValAlaGlnValAlaIleLysMetIleMetCysArgPheGlnGlnLysGlnP 1058285 : GGCTGTCGCCCAGGTGGCAATCAAAATGATAATGTGCCGTTTCCAGCAGAAGCAAT : 1058229 110 : euGln >>>> Target Intron 1 >>>> GluLeuGlyAlaSerLeuAsnA : 118 !!||| 83 bp ! !||| ! !..!:!!.!.: heGln++ ++ValLeuTyrPheAspMetGluA 1058228 : TCCAGgt.........................agGTATTGTACTTCGACATGGAGA : 1058119 119 : spPheValArgAsnSerAsnGluAsnGluLysPheTyrLeuGlnLysTyrValAsp : 136 !!||| !||| !!:!!!.!......|||||| ||||||::!||||||||| snPheCysArgTyrAlaThrSerLysGluLysValValLeuGlnArgTyrValAsp 1058118 : ATTTCTGCAGATACGCCACCtcgaaggaaaaagttgtcCTGCAACGATACGTGGAC : 1058065 137 : LysCysTrpLysPheHisGlyTyrMetThrCysSerTyrTyrLeuThrThrSerAl : 155 !:!! ! ! ||||||||| ! ! !! !!!! !!:!|||||||||! ! ArgTyrLysTyrPheHisGlyIleTyrIleLeuTrpCysPheLeuThrThrIlePh 1058064 : AGATACAAATACTTTCATGGGATTTATATATTATGGTGCTTCCTCACGACCATCTT : 1058008 156 : aValLeuMetGlyProLeuValLeuProGluLysPheProSerAspAlaValTyrP : 174 !|||:!!! ||||||||| !! !|||:!!! !||||||!!! !!|||:!!|||| eValIleSerGlyProLeuTyrSerProGlnThrPheProThrHisAlaIleTyrP 1058007 : CGTCATAAGTGGTCCATTGTACTCACCACAGACGTTCCCCACTCATGCGATATATC : 1057951 175 : roPheProValAspHisProValValAlaThrIleValTyrLeuHisGlnCysIle : 192 |||||! !|||!!:||| !!:!! !! ::::::|||...||||||! :!! roPheGlnValGluHisThrLeuPheLysIleValIleTyrPheHisGlnSerLeu 1057950 : CTTTCCAAGTGGAACATACACTGTTCAagattgttatttatttccatCAGTCGTTA : 1057897 193 : ValGlyTyrGlnCysAlaAlaGlyMetAlaLeuAspCysGlnAlaAlaLeuPheLe : 211 ||||||!:!|||...:!!||||||||||||:!!||| !||| !||||||.!!|| ValGlyPheGlnAlaSerAlaGlyMetAlaIleAspThrGlnIleAlaLeuLeuLe 1057896 : GTTGGTTTTCAGGCGTCCGCTGGTATGGCCATCGACACTCAAATTGCTCTTCTTCT : 1057840 212 : uTrpTyrLeuSerAlaArgPheGluIleLeuIleSerGluThrValAsnIleAlaS : 230 | ! ||| !:!!||||||||||||:!!||| !!:!|||! ! !||| ! !! uArgTyrAlaAlaAlaArgPheGluLeuLeuGlyAsnGluMetArgAsnAlaAsnT 1057839 : GCGATACGCGGCTGCCAGGTTCGAGCTATTGGGAAACGAGATGCGAAATGCAAATA : 1057783 231 : erHisLysGluIleGlnAspPheIleLysThrHisGlnAspIleLeu{Ly} >>> : 246 !!||| |||.!!.!.! !! !|||:!!! !|||...!!::!!|||{!:} hrHisCysGluPheAsnAlaCysIleGluLysHisSerGluLeuLeu{Ar}++ 1057782 : CTCACTGTGAATTCAATGCCTGCATAGAGAAGCACAGTGAACTTCTC{AG}gt... : 1057731 247 : > Target Intron 2 >>>> {s}PheGlyLysGlnValIleArgProIleAr : 256 1480 bp {!}!:! !||| !:!! !!:! !!|||!: ++{g}TyrThrLysThrIleArgGlnSerIleLy 1057730 : ......................ag{G}TATACGAAAACAATTCGACAATCTATCAA : 1056225 257 : gLeuIleValLeuThrThrValThrMetThrLysValGlyMetIlePheGlyAlaI : 275 !!!!:!!:!!|||||||||:!!.!!! |||! |||!.!:!:|||||||||::!: sPheLeuIleLeuThrThrIleAlaThrThrThrValAlaValIlePheGlySerL 1056224 : GTTCCTAATTTTGACCACTATTGCGACTACTACCGTGGCCGTAATTTTTGGTAGCT : 1056168 276 : leValLeuIleSer : 279 !: !||||||:!! euAsnLeuIleAla 1056167 : TGAATTTAATCGCT : 1056154 vulgar: gi|861722515|gb|AKO90005.1| 15 279 . KQ414618.1 1058508 1056153 - 496 M 95 285 5 0 2 I 0 79 3 0 2 M 135 405 S 0 2 5 0 2 I 0 1476 3 0 2 S 1 1 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1056154 1058508 496 - . gene_id 1 ; sequence gi|861722515|gb|AKO90005.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1058224 1058508 . - . KQ414618.1 exonerate:protein2genome:local exon 1058224 1058508 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1058222 1058223 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1058141 1058223 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1058141 1058142 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1057734 1058140 . - . KQ414618.1 exonerate:protein2genome:local exon 1057734 1058140 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1057732 1057733 . - . intron_id 2 ; splice_site "gt" KQ414618.1 exonerate:protein2genome:local intron 1056254 1057733 . - . intron_id 2 KQ414618.1 exonerate:protein2genome:local splice3 1056254 1056255 . - . intron_id 1 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1056154 1056253 . - . KQ414618.1 exonerate:protein2genome:local exon 1056154 1056253 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1056154 1058508 496 - . alignment_id 1 ; Query gi|861722515|gb|AKO90005.1| ; Align 1058509 16 285 ; Align 1058141 111 405 ; Align 1056253 247 99 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722515|gb|AKO90005.1| odorant receptor 41 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 241 Query range: 108 -> 278 Target range: 1029179 -> 1028464 109 : LeuGlnGluLeuGlyAlaSerLeuAsnAspPheValArgAsnSerAsnGluAsnGl : 127 ||||||:!!||| !! !..!:!!!!. !! ! !..!!..:!!!!. ! !!|| LeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGl 1029179 : TTGCAGAAACTAATCGAAGAAATGAAGATTTGCTGTGAAACAGCGAAACCATACGA : 1029125 128 : uLysPheTyrLeuGlnLysTyrValAspLysCysTrpLysPheHisGlyTyrMetT : 146 |!:! ! !!!!|||::!||||||||||||! !! !|||:!!! ! : uArgAspValPheGlnArgTyrValAspLysTyrSerLeuPheTyrValThrCysS 1029124 : AAGAGACGTCTTTCAACGATACGTCGATAAATACTCTTTATTTTACGTAACATGTT : 1029068 147 : hrCysSerTyrTyrLeuThrThrSerAlaValLeuMetGlyProLeuValLeuPro : 164 !!! !!!!:!|||||||||.!! ! !:!!:!!:!!||| !! !:!!:!! !! erSerTrpPheTyrLeuThrAlaValIleMetValLeuGlySerArgIleIleSer 1029067 : CGTCGTGGTTTTACTTAACAGCAGTTATTATGGTTCTGGGAAGTCGGATTATATCT : 1029014 165 : GluLysPheProSerAspAlaValTyrProPheProValAspHisProValValAl : 183 !!: ||||||!!!:!!|||||||||||||||||||||:!! ! ! !:!! AspProPheProThrAsnAlaValTyrProPheProValAsnPheGluProLeuAr 1029013 : GATCCTTTTCCAACCAACGCCGTATATCCATTCCCTGTTAACTTTGAACCCTTGAG : 1028957 184 : aThrIleValTyrLeuHisGlnCysIleValGlyTyrGlnCysAlaAlaGlyMetA : 202 !!:!|||:!!!:!:!!||||||! .!!|||||| |||||||||||| !! : gSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisThrS 1028956 : AAGTATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACACTA : 1028900 203 : laLeuAspCysGlnAlaAlaLeuPheLeuTrpTyrLeuSerAlaArgPheGluIle : 220 :!:!!:!! ! !.!!||||||!!.||| !:! !:!!||||||||||||||| erMetAsnValLeuThrAlaLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIle 1028899 : GTATGAATGTGCTAACTGCATTGTTATTACTATTTGCTGCAGCTCGTTTCGAGATA : 1028846 221 : LeuIleSerGluThrValAsnIleAlaSerHisLysGluIleGlnAspPheIleLy : 239 |||!!:! !||| ! !|||:!!::!..! !:!! !:!: ! ! !!!:|| LeuMetMetGluLeuArgAsnValSerAspIleGluThrLeuIleLysCysMetLy 1028845 : CTGATGATGGAGCTGAGGAATGTCAGTGACATTGAAACACTGATTAAATGTATGAA : 1028789 240 : sThrHisGlnAspIleLeu{Ly} >>>> Target Intron 1 >>>> {s}P : 247 |! !:!!..! !:!!! !{!:} 205 bp {!}! sLysTyrSerIleValArg{Ar}++ ++{g}T 1028788 : AAAGTATTCGATCGTACGG{AG}gt.........................ag{G}T : 1028560 248 : heGlyLysGlnValIleArgProIleArgLeuIleValLeuThrThrValThrMet : 265 :!!.!! !.!.|||:!!! ! !!|||||||||:!:||||||! !||||||! !! yrAlaThrAspValValThrThrIleArgLeuLeuValLeuIleThrValIleThr 1028559 : ACGCAACGGACGTGGTTACCACAATTCGACTTCTGGTTCTGATTACGGTAATCACA : 1028506 266 : ThrLysValGlyMetIlePheGlyAlaIleValLeuIle : 278 !! |||!.! :!!|||!.!!.!||| !|||||| CysThrValAlaCysValPheAlaGlyIleAsnLeuIle 1028505 : TGCACTGTGGCGTGTGTATTTGCTGGAATTAACTTGATC : 1028465 vulgar: gi|861722515|gb|AKO90005.1| 108 278 . KQ414618.1 1029179 1028464 - 241 M 137 411 S 0 2 5 0 2 I 0 201 3 0 2 S 1 1 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028465 1029179 241 - . gene_id 2 ; sequence gi|861722515|gb|AKO90005.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1028767 1029179 . - . KQ414618.1 exonerate:protein2genome:local exon 1028767 1029179 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1028765 1028766 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1028562 1028766 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1028562 1028563 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1028465 1028561 . - . KQ414618.1 exonerate:protein2genome:local exon 1028465 1028561 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028465 1029179 241 - . alignment_id 2 ; Query gi|861722515|gb|AKO90005.1| ; Align 1029180 109 411 ; Align 1028561 247 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722515|gb|AKO90005.1| odorant receptor 41 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 211 Query range: 108 -> 228 Target range: 1038346 -> 1037986 109 : LeuGlnGluLeuGlyAlaSerLeuAsnAspPheValArgAsnSerAsnGluAsnGl : 127 ||||||:!!||| !! !..!:!!!!. !! ! !..!!..:!!!!. ! !!|| LeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGl 1038346 : TTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGA : 1038292 128 : uLysPheTyrLeuGlnLysTyrValAspLysCysTrpLysPheHisGlyTyrMetT : 146 |!:! ! !!!!|||::!||||||:!!||| |||::: : uArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysS 1038291 : AAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTT : 1038235 147 : hrCysSerTyrTyrLeuThrThrSerAlaValLeuMetGlyProLeuValLeuPro : 164 !!! !!!!:!|||||||||.!!! ! !:!!:!!:!:||| !|||:!!:!! !! erSerTrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSer 1038234 : CGTCATGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCC : 1038181 165 : GluLysPheProSerAspAlaValTyrProPheProValAspHisProValValAl : 183 !!: ||||||!!!:!!|||||||||||||||||||||:!! ! ! !:!! AspProPheProThrAsnAlaValTyrProPheProValAsnPheGluProLeuAr 1038180 : GATCCTTTTCCAACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAG : 1038124 184 : aThrIleValTyrLeuHisGlnCysIleValGlyTyrGlnCysAlaAlaGlyMetA : 202 !!:!|||:!!!:!:!!||||||! .!!|||||| |||||||||||| ! : gSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisAlaS 1038123 : AAGCATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTA : 1038067 203 : laLeuAspCysGlnAlaAlaLeuPheLeuTrpTyrLeuSerAlaArgPheGluIle : 220 :!:!!:!! ! :!!||||||!!.||| !:! !!!!||||||||||||||| erMetAsnValLeuSerAlaLeuLeuLeuLeuPheThrThrAlaArgPheGluIle 1038066 : GTATGAATGTGCTTTCTGCACTGTTATTGCTATTCACTACAGCtcgtttcgaaata : 1038013 221 : LeuIleSerGluThrValAsnIle : 228 |||:!:!!!||| ! !|||:!! LeuMetThrGluLeuArgAsnVal 1038012 : ttgaTGACGGAGTTGAGGAATGTC : 1037987 vulgar: gi|861722515|gb|AKO90005.1| 108 228 . KQ414618.1 1038346 1037986 - 211 M 120 360 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037987 1038346 211 - . gene_id 3 ; sequence gi|861722515|gb|AKO90005.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1037987 1038346 . - . KQ414618.1 exonerate:protein2genome:local exon 1037987 1038346 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037987 1038346 211 - . alignment_id 3 ; Query gi|861722515|gb|AKO90005.1| ; Align 1038347 109 360 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722515|gb|AKO90005.1| odorant receptor 41 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 206 Query range: 107 -> 230 Target range: 1052959 -> 1052590 108 : GluLeuGlnGluLeuGlyAlaSerLeuAsnAspPheValArgAsnSerAsnGluAs : 126 ...||||||..!:!! !.!!..!:!!! ! !:!|||!:!.!.:!!.!.:!! SerLeuGlnArgIleIleThrGluMetIleThrTyrValLysGluAlaGlnGlnPh 1052959 : TCTTTACAGCGAATAATTACAGAAATGATCACGTACGTCAAAGAGGCGCAGCAATT : 1052905 127 : nGluLysPheTyrLeuGlnLysTyrValAspLysCysTrpLysPheHisGlyTyrM : 145 !|||!:! !|||!!.!!.|||:!!.!.|||||| |||:!!||| ! eGluArgGluIleLeuHisAsnTyrIleGlnLysCysLysLeuPheTyrGlyGlyS 1052904 : CGAAAGGGAAATTCTCCACAACTATATCCAAAAATGCAAACTTTTTTACGGTGGTT : 1052848 146 : etThrCysSerTyrTyrLeuThrThrSerAlaValLeuMetGlyProLeuValLeu : 163 ! ! !!!! |||||| !.!!!!!..! !!:!!:!:||||||:!!|||||| erLeuIleTrpThrTyrLeuCysAlaThrCysPheValLeuGlyProValValLeu 1052847 : CGTTAATTTGGACATACCTCTGTGCAACTTGTTTCGTATTAGGACCCGTTGTTCTA : 1052794 164 : ProGluLysPheProSerAspAlaValTyrProPheProValAspHisProValVa : 182 |||.!. |||||||||..!|||! !|||||||||! !|||:!!!.! !! !:! ProAsnProPheProSerSerAlaGluTyrProPheArgValAsnArgThrProMe 1052793 : CCAAATCCTTTTCCCAGCAGTGCAGAGTATCCGTTTCGCGTTAATCGTACACCCAT : 1052737 183 : lAlaThrIleValTyrLeuHisGlnCysIleValGlyTyrGlnCysAlaAlaGlyM : 201 ! !.!!||||||||||||||||||! !.!!:!!.!!!:!|||! !::!||| !! tAsnAlaIleValTyrLeuHisGlnSerPheIleSerPheGlnTyrSerAlaHisI 1052736 : GAATGCTATTGTCTACCTGCACCAATCTTTCATAAGCTTTCAGTACAGTGCACACA : 1052680 202 : etAlaLeuAspCysGlnAlaAlaLeuPheLeuTrpTyrLeuSerAlaArgPheGlu : 219 !:..!:!!..! ! !.!||||||!!.|||||| ! !:!!|||||||||.!. leCysValSerIlePheGlyAlaLeuLeuLeuTrpIleThrAlaAlaArgPheHis 1052679 : TATGTGTAAGCATTTTCGGAGCTCTTTTACTCTGGATTACGGCTGCGAGATTTCAT : 1052626 220 : IleLeuIleSerGluThrValAsnIleAlaSer : 230 !|||! ! !|||..! !.!.! !:!!||| CysLeuThrLeuGluValGlnGlnSerSerSer 1052625 : TGCTTAACTCTGGAGGTTCAACAAAGTTCAAGT : 1052591 vulgar: gi|861722515|gb|AKO90005.1| 107 230 . KQ414618.1 1052959 1052590 - 206 M 123 369 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1052591 1052959 206 - . gene_id 4 ; sequence gi|861722515|gb|AKO90005.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1052591 1052959 . - . KQ414618.1 exonerate:protein2genome:local exon 1052591 1052959 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1052591 1052959 206 - . alignment_id 4 ; Query gi|861722515|gb|AKO90005.1| ; Align 1052960 108 369 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722518|gb|AKO90006.1| odorant receptor 42 [Microplitis mediator] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 150 -> 211 Target range: 3180140 -> 3180323 151 : MetProTyrGlnGlyTrpPheProTyrAsnTyrThrValTyrLysTyrTyrTrpPr : 169 :!: !!|||::!|||||||||||||||:!!||||||..! ! ! !!:! LeuThrTyrArgGlyTrpPheProTyrAspTyrThrThrAlaValLeuPheProLe 3180141 : CTAACCTACAGAGGCTGGTTCCCTTACGATTACACGACCGCCGTACTTTTTCCATT : 3180195 170 : oThrValIleTyrGlnLeuTyrAlaValCysSerGlyAlaTrpValAsnLeuAlaT : 188 !||| ! ! ||||||! ..!||| ! ! !:!!|||:!!:!!:!!:!! uThrTyrAlaLeuGlnLeuLeuCysValLeuValTyrSerTrpIleHisValSerV 3180196 : GACATACGCTCTGCAGCTATTATGCGTGCTCGTATATTCCTGGATCCACGTTTCAG : 3180252 189 : yrAspSerLeuPheCysSerIleLeuTyrTyrValCysAlaGlnThrHisIleLeu : 206 |||! !||||||! !.!!:!:||| ! :!!|||..!||| ! ! |||||| alAspIleLeuPhePheGlyLeuLeuMetGlnLeuCysCysGlnPheAspIleLeu 3180253 : TGGATATTCTCTTCTTCGGACTGTTGATGCAACTGTGCTGTCAATTCGAcattctc : 3180306 207 : LysHisArgPheSer : 211 ||||||||| PheSerArgPheSer 3180307 : ttctctcgtttcAGT : 3180323 vulgar: gi|861722518|gb|AKO90006.1| 150 211 . KQ414646.1 3180140 3180323 + 122 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180141 3180323 122 + . gene_id 1 ; sequence gi|861722518|gb|AKO90006.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180141 3180323 . + . KQ414646.1 exonerate:protein2genome:local exon 3180141 3180323 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180141 3180323 122 + . alignment_id 1 ; Query gi|861722518|gb|AKO90006.1| ; Align 3180141 151 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722518|gb|AKO90006.1| odorant receptor 42 [Microplitis mediator] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 0 -> 117 Target range: 3149023 -> 3149377 1 : MetAlaIleLeuGluArgAsnIlePheIleLeuThrLeuValGlyValTrpLysPr : 19 ||||||||||||..!! ! !.!! !|||||||||:!! !||| !|||!:!|| MetAlaIleLeuArgProAlaPheAsnIleLeuThrIleCysGlyCysTrpArgPr 3149024 : ATGGCTATCTTACGGCCAGCTTTCAACATACTGACGATCTGCGGATGCTGGAGGCC : 3149078 20 : oAsnHisTrpLysGlyPheLysAla<->AlaLeuTyrTyrPheTyrIleCysLeuV : 37 | ! !! ::! ! :::||| ||| !||| ! !!|||! !!!| oCysSerCysArgThrThrArgAlaLysAlaAlaTyrIleValTyrThrMetPheV 3149079 : GTGCTCGTGCCGAACGACACGCGCCAAGGCCGCGTACATCGTTTACACGATGTTCG : 3149135 38 : alThrIleValAsnHisSerPheLeuLeuSerGlyValLeuAspPheGluLeuArg : 55 ||..!:!!:!! |||||||||! !:!:||| ...::: !|||!.! alValLeuLeuLeuHisSerPheCysIleSerGlnPhePheAsnValIleLeuAsn 3149136 : TGGTACTTTTATTGCACAGCTTCTGCATctcgcaatttttcaacgtgatACTGAAC : 3149189 56 : AsnIleAspValValValIleIleAspAsnLeuSerLeuLeuIleCysValPheTh : 74 ! ! !.!! !! !:!:! !!!:!:!!!!! !:!!!!!|||... ! !! LeuArgThrAlaAspGluLeuSerGluSerPheTyrMetPheIleAlaSerValLe 3149190 : TTGAGAACGGCGGACGAGCTGAGCGAGAGTTTCTACATGTTCATCGCGTCCGTTCT : 3149246 75 : rIleArgTyrLysIleIleThrLeuLeuTyrTyrArgLysPheIleGluGluPheV : 93 ! ! !!! !||||||:!!||||||||| !!!.! ! !|||||| .!! uSerCysCysLysIleValThrLeuLeuThrAsnHisGlySerIleGluIleLeuA 3149247 : GTCCTGCTGCAAGATCGTCACGCTGCTGACGAACCACGGAAGCATCGAGATCCTCC : 3149303 94 : alAsnCysPheGluArgAspProPheArgAlaLysAspAsnGluGluGluGlnIle : 111 !!.. ! .!.|||..!!!:|||! !!:! !! !..! !||||||! ||| rgArgArgLeuGluGluGluProCysLysProValSerAlaGluGluAlaValIle 3149304 : GGAGGAGACTGGAGGAGGAGCCGTGTAAACCTGTGAGCGCCGAGGAGGCTGTCATA : 3149357 112 : TyrValGlnPheAspLys : 117 ! !:!!||||||!:! GlnSerLysPheAspArg 3149358 : CAGAGTAAATTCGACAGA : 3149377 vulgar: gi|861722518|gb|AKO90006.1| 0 117 . KQ414646.1 3149023 3149377 + 100 M 27 81 G 0 3 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3149024 3149377 100 + . gene_id 2 ; sequence gi|861722518|gb|AKO90006.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3149024 3149377 . + . KQ414646.1 exonerate:protein2genome:local exon 3149024 3149377 . + . insertions 3 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3149024 3149377 100 + . alignment_id 2 ; Query gi|861722518|gb|AKO90006.1| ; Align 3149024 1 81 ; Align 3149108 28 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722490|gb|AKO89999.1| odorant receptor 35 [Microplitis mediator] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 261 Query range: 236 -> 366 Target range: 3178372 -> 3178917 237 : LysPhePheSerGluMetValAspThrIleSerHisValPheGlyProMetIlePh : 255 ...|||... ....!...!.!.|||:!:!:! !|||||| ! !|||||||| AsnPheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePh 3178373 : aatttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTT : 3178427 256 : eIleGlnTyrSerPheSerSerValValLeuCysSerSerValTyrAlaLeuSerG : 274 |:!:|||!:!|||.!!||||||..!|||||||||! !|||:!!||| !:!!||| eLeuGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerT 3178428 : CCTGCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGA : 3178484 275 : lnMetValProPheSerProGluPheCysAlaCysSerValTyrIleLeuCysMet : 292 !!!: !||||||||| !.!.||| ! !|||:!! !|||:!!! !|||||| hrIleAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMet 3178485 : CGATTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATG : 3178538 293 : PhePheGlnIleLeuTyrIleCysLeuSerGlyAsnArgValThrLeuGlu >>> : 310 .!! |||:!:! !! !|||! !! !||||||..!|||||||||:!! LeuThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys++ 3178539 : CTCACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAGgt... : 3178594 311 : > Target Intron 1 >>>> PheAlaLysLeuGlyThrAlaMetTyrAspTh : 320 155 bp !! !|||:!!||| !|||!!:|||!!:! ++SerGluLysValGlyGluAlaIleTyrGluMe 3178595 : ......................agAGCGAAAAAGTAGGCGAAGCTATTTACGAGAT : 3178777 321 : rTyrTrpPheAlaLeuSerAsnAsnAlaGlnLysHisIleIleMetMetMetMetS : 339 ! !!||| |||||| !!!.!:!! !::!||| !!:!!:!::!!!!:||| !! tAspTrpThrAlaLeuProThrAspIleArgLysAspLeuLeuLeuIleMetAlaA 3178778 : GGACTGGACGGCACTTCCCACCGATATAAGGAAAGATCTATTGCTGATCATGGCGA : 3178834 340 : erSerValLysProIleIlePheAlaSerGlyHisValValThrLeuSerLeuGlu : 357 !!||| !::!|||:!!! !.!..!!|||||||||||||||..!|||||| !||| rgSerLysArgProValLysMetThrSerGlyHisValValValLeuSerAlaGlu 3178835 : GATCAAAACGACCTGTTAAAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAA : 3178888 358 : SerPheLysArgLeuLeuLysLeuSer : 366 ||||||! ! !:!! !!:!:!!||| SerPheMetSerValSerArgIleSer 3178889 : TCATTTATGTCTGTTAGTAGAATTTCC : 3178917 vulgar: gi|861722490|gb|AKO89999.1| 236 366 . KQ414646.1 3178372 3178917 + 261 M 73 219 5 0 2 I 0 151 3 0 2 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178373 3178917 261 + . gene_id 1 ; sequence gi|861722490|gb|AKO89999.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3178373 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178373 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178592 3178593 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3178592 3178746 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3178745 3178746 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3178747 3178917 . + . KQ414646.1 exonerate:protein2genome:local exon 3178747 3178917 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178373 3178917 261 + . alignment_id 1 ; Query gi|861722490|gb|AKO89999.1| ; Align 3178373 237 219 ; Align 3178747 310 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722490|gb|AKO89999.1| odorant receptor 35 [Microplitis mediator] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 245 Query range: 7 -> 211 Target range: 3179634 -> 3180320 8 : PheCysValLeuThrGlyIleGlyLeuTrpArgProValGluTrpGlnGly<->Il : 25 ||| |||::! ! !|||! !|||||||||:!!..!|||.....! PheThrPheLeuSerIleGlyGlyCysTrpArgProIleSerTrpSerSerThrTy 3179635 : tttacatttctcaGTATCGGTGGCTGTTGGAGACCGATCTCGTGGTCTTCGACGTA : 3179689 26 : eLysGlyAlaPheTyrAsnCysTyrThrLeuLeuValLeuLeuAsnSerIleThrP : 44 !||| !|||.!!|||||| !||||||:!!|||||||||:!!! .!!:!!!.!| rLysThrAlaIleTyrAsnValTyrThrValLeuValLeuIleMetGlyValAsnP 3179690 : CAAAACGGCAATCTACAATGTCTACACCGTTCTCGTATTAATCATGGGTGTTAATT : 3179746 45 : heIleIleSerGluSerMetGluLeuIlePhePheAsnAspGlyIlePheAspPhe : 62 ||!!::!!|||:!! .!.! !!!:||| !! !!: !:!! |||||| heMetValSerGln---PheGlySerMetPheThrIleGluThrValGlnAspPhe 3179747 : TCATGGTTTCGCAA---TTTGGCAGCATGTTCACCATAGAAACCGTACAAGATTTC : 3179797 63 : PheAsnAsnSerSerMetLeuIleThrValIleGlyMetCysGlyLysLeuIleTh : 81 !!:!! !!!!! !!!:! !:!!:!!|||.!!! ! ||| !!|||||| !!. ValAspLeuThrTyrIleCysValSerValPheValGlyCysCysLysLeuSerAs 3179798 : GTCGACCTTACTTACATATGCGTCTCCGTGTTCGTCGGTTGTTGCAAGCTGTCAAA : 3179854 82 : rValValThrAsnArgGluThrIleIleLysMetIleGluArgPheHisArgSerP : 100 !|||||| ! !!|||:!! !|||||| ! :!!!!:.!.! !||| ..!..!| nValValPheTyrArgLysAspIleIleAspLeuMetAsnIlePheMetGluAspP 3179855 : CGTGGTGTTCTATCGGAAAGATATCATAGACCTGATGAACATCTTCATGGAGGATC : 3179911 101 : roPheSerProArgAspTyrGluGluGluIleIleHisLysAsnPheAsnGlnLys : 118 ||! !:!! ! !:!! ! ||||||!!: :!:!!. !!..!:!:!!.!.:!! roCysAlaCysSerAsnLysGluGluAspGlnValGlnAlaArgTyrAspAspGln 3179912 : CTTGTGCATGTTCGAACAAGGAGGAGGACCAGGTGCAAGCGAGATACGACGATCAA : 3179965 119 : Ile{Ar} >>>> Target Intron 1 >>>> {g}PheAsnThrLeuAlaTy : 126 :!!{||} 77 bp {|} |||.!!:!! !|| Leu{Ar}++ ++{g}LysAsnAlaValArgTy 3179966 : TTA{CG}gt.........................ag{G}AAAAACGCTGTCAGATA : 3180066 127 : rIleValPhePheGluAlaSerValThrValTyrThrValGlyLysIlePheGluA : 145 |! !:!! ! !!||| !||||||.!! ! !! !:!!..!..!:!! ! : rThrMetValValGluMetSerValAlaSerThrIleLeuAsnSerLeuValThrA 3180067 : CACAATGGTAGTCGAGATGTCGGTCGCCTCGACTATTTTAAACTCGTTAGTGACCA : 3180123 146 : spArgProProGlyValLeuProCysArgAlaTrpLeuProTyrAspTyrSerAsn : 163 !! !! !! !||| !||| !!! !|||!.!|||!!!||||||||||||!!! snPheGlnHisGlyArgLeuThrTyrArgGlyTrpPheProTyrAspTyrThr--- 3180124 : ACTTTCAACACGGCAGACTAACCTACAGAGGCTGGTTCCCTTACGATTACACG--- : 3180177 164 : AsnIleIleIleTyrTrpMetThrAlaSerGlnGlnLeuLeuThrValValMetTh : 182 !.! !:!!:!!!:! :!!||| !:!!! !||||||||| !|||:!!:!: ThrAlaValLeuPheProLeuThrTyrAlaLeuGlnLeuLeuCysValLeuValTy 3180178 : ACCGCCGTACTTTTTCCATTGACATACGCTCTGCAGCTATTATGCGTGCTCGTATA : 3180231 183 : rAlaAsnValAspIleAlaTyrAspThrLeuPheProGlyMetMetMetGlnValC : 201 !:!! :!! !!:!!:!! |||! !|||||| !|||:!!:!!||||||:!!| rSerTrpIleHisValSerValAspIleLeuPhePheGlyLeuLeuMetGlnLeuC 3180232 : TTCCTGGATCCACGTTTCAGTGGATATTCTCTTCTTCGGACTGTTGATGCAACTGT : 3180288 202 : ysIleGlnIleAsnValLeuLysHisArgPhe : 211 || !|||.!!:!::::||| |||||| ysCysGlnPheAspIleLeuPheSerArgPhe 3180289 : GCTGTCAATTCGAcattctcttctctcgtttc : 3180320 vulgar: gi|861722490|gb|AKO89999.1| 7 211 . KQ414646.1 3179634 3180320 + 245 M 17 51 G 0 3 M 24 72 G 1 0 M 70 210 S 0 2 5 0 2 I 0 73 3 0 2 S 1 1 M 42 126 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3179635 3180320 245 + . gene_id 2 ; sequence gi|861722490|gb|AKO89999.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3179635 3179972 . + . KQ414646.1 exonerate:protein2genome:local exon 3179635 3179972 . + . insertions 3 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3179973 3179974 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3179973 3180049 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3180048 3180049 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3180050 3180320 . + . KQ414646.1 exonerate:protein2genome:local exon 3180050 3180320 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3179635 3180320 245 + . alignment_id 2 ; Query gi|861722490|gb|AKO89999.1| ; Align 3179635 8 51 ; Align 3179689 25 72 ; Align 3179761 50 210 ; Align 3180051 121 126 ; Align 3180177 164 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722490|gb|AKO89999.1| odorant receptor 35 [Microplitis mediator] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 150 -> 212 Target range: 3160146 -> 3160332 151 : LeuProCysArgAlaTrpLeuProTyrAspTyrSerAsnAsnIleIleIleTyrTr : 169 |||||| !|||!.!|||||||||!:!||||||!!! !!..:!: !|||!:! ! LeuProLeuArgValTrpLeuProPheAspTyrArgAlaThrLeuGlyIlePheSe 3160147 : TTACCCCTTCGAGTATGGTTACCTTTCGATTATAGAGCCACATTGGGTATTTTCAG : 3160201 170 : pMetThrAlaSerGlnGlnLeuLeuThrValValMetThrAlaAsnValAspIleA : 188 :!:||| !:!! ! |||!!!:!!|||:!!:!!.!.! !.!!!.!!.! !!!:! rLeuThrTyrAlaTyrGlnPheValThrLeuIlePheIleThrThrAlaIleMetG 3160202 : CCTTACCTACGCTTATCAGTTTGTAACTCTGATATTCATTACTACCGCGATTATGG : 3160258 189 : laTyrAspThrLeuPheProGlyMetMetMetGlnValCysIleGlnIleAsnVal : 206 .! !|||!.!|||||| !|||:!!:!!!!:!!.:!!! ! !|||.!!.!.:!! lyThrAspAsnLeuPheSerGlyLeuLeuIleHisIleTyrCysGlnPheGluIle 3160259 : GTACTGACAATCTATTCAGCGGACTGTTGATCCACATTTATTGCCAATTCGAGATA : 3160312 207 : LeuLysHisArgPheArg : 212 |||:!!||||||.!.!:! LeuGlnHisArgLeuLys 3160313 : CTCCAACATCGTCTGAAG : 3160332 vulgar: gi|861722490|gb|AKO89999.1| 150 212 . KQ414646.1 3160146 3160332 + 121 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3160147 3160332 121 + . gene_id 3 ; sequence gi|861722490|gb|AKO89999.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3160147 3160332 . + . KQ414646.1 exonerate:protein2genome:local exon 3160147 3160332 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3160147 3160332 121 + . alignment_id 3 ; Query gi|861722490|gb|AKO89999.1| ; Align 3160147 151 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722490|gb|AKO89999.1| odorant receptor 35 [Microplitis mediator] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 119 -> 212 Target range: 3150032 -> 3150308 120 : ArgPheAsnThrLeuAlaTyrIleValPhePheGluAlaSerValThrValTyrTh : 138 |||! |||:!! !|||! :!!.!. ! ||| !!!!||| ! ! ! ArgSerValThrIleTyrTyrThrIleLeuValGluLeuThrValLeuCysMetIl 3150033 : AGGTCGGTGACGATTTACTACACGATTCTGGTGGAACTCACGGTCCTCTGTATGAT : 3150087 139 : rValGlyLysIlePheGluAspArgProProGlyValLeuProCysArgAlaTrpL : 157 !:!!..!..!:!:.!!! ||| ! ! ! !!! !||| !!! !|||||||||| eLeuSerSerLeuLeuGlyAspPheAsnGluArgGluLeuAlaTyrArgAlaTrpL 3150088 : CCTCTCTTCGTTGCTCGGCGACTTTAACGAGCGGGAACTGGCGTACAGAGCCTGGC : 3150144 158 : euProTyrAspTyrSerAsnAsnIleIleIleTyrTrpMetThrAlaSerGlnGln : 175 |||||!:!||||||||| ! ! !|||!::!!:.!! ! !!!.||| euProPheAspTyrSerLeuPro---ThrTyrTyrTyrIleAlaTyrValHisGln 3150145 : TGCCCTTCGATTACTCTCTGCCA---ACTTACTATTACATCGCGTACGTTCATCAG : 3150195 176 : LeuLeuThrValValMetThrAlaAsnValAspIleAlaTyrAspThrLeuPhePr : 194 :!!:!!.!!:!!:!! |||:!! ! !:!!:!!|||! !|||..!:!!.!! IleValAlaLeuIleGlyThrSerLeuSerAsnValAlaCysAspValIleIleCy 3150196 : ATCGTCGCGCTGATCGGTACGTCGCTTTCGAACGTCGCCTGCGACGTGATCATCTG : 3150252 195 : oGlyMetMetMetGlnValCysIleGlnIleAsnValLeuLysHisArgPheArg : 212 !|||:!!:!::!:!!.!.!||| !||| .!.:!!||||||||||||.!.!:! sGlyLeuLeuValHisAlaCysGlyGlnGlnGluIleLeuLysHisArgMetLys 3150253 : CGGGTTGCTCGTTCACGCTTGCGGCCAACAGGAGATTCTCAAGCACAGAATGAAG : 3150308 vulgar: gi|861722490|gb|AKO89999.1| 119 212 . KQ414646.1 3150032 3150308 + 114 M 45 135 G 1 0 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150033 3150308 114 + . gene_id 4 ; sequence gi|861722490|gb|AKO89999.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150033 3150308 . + . KQ414646.1 exonerate:protein2genome:local exon 3150033 3150308 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3150033 3150308 114 + . alignment_id 4 ; Query gi|861722490|gb|AKO89999.1| ; Align 3150033 120 135 ; Align 3150168 166 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722490|gb|AKO89999.1| odorant receptor 35 [Microplitis mediator] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 118 -> 212 Target range: 3157785 -> 3158064 119 : IleArgPheAsnThrLeuAlaTyrIleValPhePheGluAlaSerValThrValTy : 137 .!!|||!::||||||:!!!.!||| ...... |||..! ! !! PheArgTrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIl 3157786 : TTTAGATGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTAT : 3157840 138 : rThrValGlyLysIlePheGluAspArgProProGlyValLeuProCysArgAlaT : 156 !||| !!..!:!!!!. !||| ! ! ! !! !||| !! !||||||| eTyrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaT 3157841 : ATACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCAT : 3157897 157 : rpLeuProTyrAspTyrSerAsnAsnIleIleIleTyrTrpMetThrAlaSerGln : 174 ||:!!||||||||||||||| ! !|||!:! :!:|||:!! !!!. rpIleProTyrAspTyrSer---ProAlaProIlePheIleLeuThrSerValHis 3157898 : GGATACCCTACGATTACTCC---CCTGCGCCCATTTTTATCCTTACCTCCGTCCAT : 3157948 175 : GlnLeuLeuThrValValMetThrAlaAsnValAspIleAlaTyrAspThrLeuPh : 193 ||| !:!!.!! !..!!!: !..!!.! ! !:!!.!! |||||||||!: GlnAlaIleAlaSerThrIleCysCysThrSerThrValThrValAspThrLeuTy 3157949 : CAAGCTATAGCCTCGACGATATGTTGCACTTCGACCGTCACTGTGGATACTCTATA : 3158005 194 : eProGlyMetMetMetGlnValCysIleGlnIleAsnValLeuLysHisArgPheA : 212 ! !!|||:!!:!!!!:.!.:!!! ! !|||.!!.!.:!!|||:!!||||||.!.| rThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuA 3158006 : CACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAA : 3158062 213 : rg : 212 || rg 3158063 : GG : 3158064 vulgar: gi|861722490|gb|AKO89999.1| 118 212 . KQ414646.1 3157785 3158064 + 113 M 44 132 G 1 0 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3157786 3158064 113 + . gene_id 5 ; sequence gi|861722490|gb|AKO89999.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3157786 3158064 . + . KQ414646.1 exonerate:protein2genome:local exon 3157786 3158064 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3157786 3158064 113 + . alignment_id 5 ; Query gi|861722490|gb|AKO89999.1| ; Align 3157786 119 132 ; Align 3157918 164 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722490|gb|AKO89999.1| odorant receptor 35 [Microplitis mediator] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 120 -> 208 Target range: 3153114 -> 3153375 121 : PheAsnThrLeuAlaTyrIleValPhePheGluAlaSerValThrValTyrThrVa : 139 !::|||.!! !||||||! ! !|||.!.!!: !! !|||..!|||! !:! TrpAsnAlaLysAlaTyrThrTyrPheLeuAspIleLeuValValValLeuTrpIl 3153115 : TGGAACGCTAAGGCTTACACATATTTCCTGGACATCTTGGTAGTCGTTTTATGGAT : 3153169 140 : lGlyLysIlePheGluAspArgProProGlyValLeuProCysArgAlaTrpLeuP : 158 ! !..! !||| !||| ! ! ... |||..!||||||| eThrSerTyrPheThrAspTyrArgArgArgLysPheLysPheArgValTrpLeuP 3153170 : AACATCGTACTTCACGGACTACAGGcgcagaaaattcaaatttcgcgtCTGGTTAC : 3153226 159 : roTyrAspTyrSerAsnAsnIleIleIleTyrTrpMetThrAlaSerGlnGlnLeu : 176 |||||||| !!!!!...!. !:!!!:! :!!! ! !!!!||||||:!! roTyrAspThrThrThrGln---ProValPheThrLeuIleTyrCysGlnGlnIle 3153227 : CTTACGACACTACTACACAA---CCTGTCTTCACTCTGATCTACTGTCAACAGATC : 3153277 177 : LeuThrValValMetThrAlaAsnValAspIleAlaTyrAspThrLeuPheProGl : 195 :!! !..! ! !:!!.!|||:!!:!!:!! !! !||| !|||||| !|| ValCysThrTrpTyrSerValAsnIleAsnValIleCysAspCysLeuPheSerGl 3153278 : GTCTGCACGTGGTACAGCGTGAATATTAACGTCATTTGCGACTGCCTGTTCAGCGG : 3153334 196 : yMetMetMetGlnValCysIleGlnIleAsnValLeuLys : 208 |:!!|||!!:|||:!!||| ! :!!... !:!!||| yLeuMetIleGlnIleCysSerIleLeuArgLysMetLys 3153335 : CCTGATGATACAGATTTGCTCAATCTTACGGAAGATGAAA : 3153375 vulgar: gi|861722490|gb|AKO89999.1| 120 208 . KQ414646.1 3153114 3153375 + 108 M 44 132 G 1 0 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3153115 3153375 108 + . gene_id 6 ; sequence gi|861722490|gb|AKO89999.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3153115 3153375 . + . KQ414646.1 exonerate:protein2genome:local exon 3153115 3153375 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3153115 3153375 108 + . alignment_id 6 ; Query gi|861722490|gb|AKO89999.1| ; Align 3153115 121 132 ; Align 3153247 166 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722490|gb|AKO89999.1| odorant receptor 35 [Microplitis mediator] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 118 -> 212 Target range: 3164313 -> 3164592 119 : IleArgPheAsnThrLeuAlaTyrIleValPhePheGluAlaSerValThrValTy : 137 .!!|||!::||||||:!!!.!||| !!!..!. ! !!!!!.! ! ! PheArgTrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleCysAlaPheTrpIl 3164314 : TTTAGATGGAACACGATTGGCTACTGGAGTTTACTATTAATTTGTGCGTTCTGGAT : 3164368 138 : rThrValGlyLysIlePheGluAspArgProProGlyValLeuProCysArgAlaT : 156 !||| !!..!:!!!!. !||| ! ! ! !! !||| !! !||||||| eTyrValArgSerLeuLeuThrAspPheSerSerArgLysLeuMetPheArgAlaT 3164369 : ATACGTGAGATCGCTTTTGACAGATTTTAGTAGTAGAAAACTGATGTTTCGAGCAT : 3164425 157 : rpLeuProTyrAspTyrSerAsnAsnIleIleIleTyrTrpMetThrAlaSerGln : 174 |||||||||||||||||||| ! !|||!:! :!:||| ! !!!. rpLeuProTyrAspTyrSer---ProAlaProIlePheIleLeuThrPheValHis 3164426 : GGTTACCCTACGATTACTCC---CCTGCGCCCATTTTTATCCTTACCTTCGTCCAT : 3164476 175 : GlnLeuLeuThrValValMetThrAlaAsnValAspIleAlaTyrAspThrLeuPh : 193 ||| !:!!.!!!.!..!!!: !..!!.! !..!:!!.!! |||:!!|||!: GlnAlaIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTy 3164477 : CAAGCTATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATA : 3164533 194 : eProGlyMetMetMetGlnValCysIleGlnIleAsnValLeuLysHisArgPheA : 212 ! !!|||:!!:!!!!:.!.:!!! ! !|||.!!.!.:!!|||:!!||||||.!.| rThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuA 3164534 : CACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAA : 3164590 213 : rg : 212 || rg 3164591 : GG : 3164592 vulgar: gi|861722490|gb|AKO89999.1| 118 212 . KQ414646.1 3164313 3164592 + 107 M 44 132 G 1 0 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164314 3164592 107 + . gene_id 7 ; sequence gi|861722490|gb|AKO89999.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3164314 3164592 . + . KQ414646.1 exonerate:protein2genome:local exon 3164314 3164592 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3164314 3164592 107 + . alignment_id 7 ; Query gi|861722490|gb|AKO89999.1| ; Align 3164314 119 132 ; Align 3164446 164 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722500|gb|AKO90002.1| odorant receptor 38 [Microplitis mediator] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 284 Query range: 249 -> 385 Target range: 3178375 -> 3179011 250 : IleIleLeuGlnPheSerGlnGluSerAsnAspLeuPheAlaProIleIlePheLe : 268 ...||| :::|||!!!||| ! !||| !:!!||| ! !!!:|||||||| PheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLe 3178376 : ttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCT : 3178430 269 : uGlnTyrLeuSerSerSerLeuIleLeuCysLeuCysValGlnLeuLeuThrLysL : 287 ||||!:!! !! !|||||| !:!:||||||||| !!:!! ! !:!!:!!! !: uGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrI 3178431 : GCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGA : 3178487 288 : euAlaPheMetSerProGluPheIlePheIleValValTyrLeuGlyCysMetLeu : 305 !! ! .!.||| !.!.|||:!!!:: !!.! !|||||| !!||||||||| leAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeu 3178488 : TTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTC : 3178541 306 : ThrGlnIlePheLeuPheCysTrpTyrGlyAsnGluValIleMetGlu >>>> T : 322 ||||||:!:!:!|||!:!||||||!:!||||||||||||! :!!:!! ThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLys++ 3178542 : ACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAGgt...... : 3178594 323 : arget Intron 1 >>>> SerSerGluIleSerSerAlaIleTyrLysMetAs : 333 155 bp |||..!:!!:!!.!!..!|||||||||:!!|||:! ++SerGluLysValGlyGluAlaIleTyrGluMetAs 3178595 : ...................agAGCGAAAAAGTAGGCGAAGCTATTTACGAGATGGA : 3178780 334 : nTrpGlnValLeuThrAsnLysThrLysLysAspLeuLeuPheMetLysThrGlnS : 352 !||| !!.!||| !!!.! ! ! !!:!||||||||||||.!.!!:! !.!!::!| pTrpThrAlaLeuProThrAspIleArgLysAspLeuLeuLeuIleMetAlaArgS 3178781 : CTGGACGGCACTTCCCACCGATATAAGGAAAGATCTATTGCTGATCATGGCGAGAT : 3178837 353 : erIleLeuProIleLysPheThrSerGlyHisLeuIleGluLeuSerLeuAspSer : 370 ||! !! !|||:!!|||.!.||||||||||||:!!:!!! |||||| !!!:||| erLysArgProValLysMetThrSerGlyHisValValValLeuSerAlaGluSer 3178838 : CAAAACGACCTGTTAAAATGACAAGCGGCCACGTCGTCGTTTTATCCGCAGAATCA : 3178891 371 : PheThrLys >>>> Target Intron 2 >>>> LeuIleLysPheSerTyr : 379 |||! !... 73 bp :!!!!:|||.!.!!!||| PheMetSer++ ++IleMetLysIleThrTyr 3178892 : TTTATGTCTgt.........................agaTCATGAAGATAACGTAT : 3178991 380 : SerAlaTyrAsnLeuLeu : 385 |||:!!|||||||||||| SerSerTyrAsnLeuLeu 3178992 : TCGTCGTACAACCTCTTG : 3179011 vulgar: gi|861722500|gb|AKO90002.1| 249 385 . KQ414646.1 3178375 3179011 + 284 M 72 216 5 0 2 I 0 151 3 0 2 M 52 156 5 0 2 I 0 69 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178376 3179011 284 + . gene_id 1 ; sequence gi|861722500|gb|AKO90002.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3178376 3178591 . + . KQ414646.1 exonerate:protein2genome:local exon 3178376 3178591 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178592 3178593 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3178592 3178746 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3178745 3178746 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3178747 3178902 . + . KQ414646.1 exonerate:protein2genome:local exon 3178747 3178902 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3178903 3178904 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3178903 3178975 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3178974 3178975 . + . intron_id 1 ; splice_site "ag" KQ414646.1 exonerate:protein2genome:local cds 3178976 3179011 . + . KQ414646.1 exonerate:protein2genome:local exon 3178976 3179011 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178376 3179011 284 + . alignment_id 1 ; Query gi|861722500|gb|AKO90002.1| ; Align 3178376 250 216 ; Align 3178747 322 156 ; Align 3178976 374 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722500|gb|AKO90002.1| odorant receptor 38 [Microplitis mediator] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 223 Query range: 252 -> 387 Target range: 3164980 -> 3165536 253 : GlnPheSerGlnGluSerAsnAspLeuPheAlaProIleIlePheLeuGlnTyrLe : 271 ::!||||||:!!:!! !|||!!: !||| !! !|||:!:.!!! !|||!:!! ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3164981 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3165035 272 : uSerSerSerLeuIleLeuCysLeuCysValGlnLeuLeuThrLysLeuAlaPheM : 290 !! !|||! !! !:!::!!|||!!! !:!! ! ! !:!!|||:!!:!! ! | sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---M 3165036 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---A : 3165089 291 : etSerProGluPheIlePheIleValValTyrLeuGlyCysMetLeuThrGlnIle : 308 ||... :::|||::: |||:!!:!!|||! ! !|||! :!!||||||||| etAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 3165090 : TGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 3165143 309 : PheLeuPheCysTrpTyrGlyAsnGluValIleMetGlu >>>> Target Int : 322 |||! !!:!|||||||||||||||||||||! ! :!! 80 bp PheTyrTyrCysTrpTyrGlyAsnGluValLysHisLys++ 3165144 : TTTTACTATTGCTGGTACGGCAACGAAGTGAAACATAAGgt............... : 3165187 323 : ron 1 >>>> SerSerGluIleSerSerAlaIleTyrLysMetAsnTrpGlnVa : 336 ||| !:!!:!! !!! ! !|||!:! ! ! :!!||| ! ++SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSe 3165188 : ..........agAGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTC : 3165307 337 : lLeuThrAsnLysThrLysLysAspLeuLeuPheMetLysThrGlnSerIleLeuP : 355 !|||!.!|||!!...!! !:!! ||||||.!!|||! !! !!:::!!:!: !| rLeuAsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgP 3165308 : TTTGAACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGC : 3165364 356 : roIleLysPheThrSerGlyHisLeuIleGluLeuSerLeuAspSerPheThrLys : 373 |||||:!!||||||||| !|||:!!:!!...:!!!:!|||!!:||||||! ! ! roIleGluPheThrSerIleHisValValSerValAsnLeuGluSerPheMetAla 3165365 : CAATAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCA : 3165418 374 : >>>> Target Intron 2 >>>> LeuIleLysPheSerTyrSerAlaTyr : 382 74 bp :!!|||||| !||||||||||||!:! ++ ++ValIleLysThrSerTyrSerAlaPhe 3165419 : gt.........................agGTAATAAAAACTTCGTACTCCGCGTTC : 3165519 383 : AsnLeuLeuHisGln : 387 |||:!!:!!!!.||| AsnMetIleGlnGln 3165520 : AACATGATCCAACAA : 3165536 vulgar: gi|861722500|gb|AKO90002.1| 252 387 . KQ414646.1 3164980 3165536 + 223 M 36 108 G 1 0 M 32 96 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3164981 3165536 223 + . gene_id 2 ; sequence gi|861722500|gb|AKO90002.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3164981 3165184 . + . KQ414646.1 exonerate:protein2genome:local exon 3164981 3165184 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local splice5 3165185 3165186 . + . intron_id 1 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165185 3165264 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3165263 3165264 . + . intron_id 0 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165265 3165420 . + . KQ414646.1 exonerate:protein2genome:local exon 3165265 3165420 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local splice5 3165421 3165422 . + . intron_id 2 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local intron 3165421 3165494 . + . intron_id 2 KQ414646.1 exonerate:protein2genome:local splice3 3165493 3165494 . + . intron_id 1 ; splice_site "AG" KQ414646.1 exonerate:protein2genome:local cds 3165495 3165536 . + . KQ414646.1 exonerate:protein2genome:local exon 3165495 3165536 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3164981 3165536 223 + . alignment_id 2 ; Query gi|861722500|gb|AKO90002.1| ; Align 3164981 253 108 ; Align 3165089 290 96 ; Align 3165265 322 156 ; Align 3165495 374 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722500|gb|AKO90002.1| odorant receptor 38 [Microplitis mediator] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 176 Query range: 252 -> 371 Target range: 3158452 -> 3158886 253 : GlnPheSerGlnGluSerAsnAspLeuPheAlaProIleIlePheLeuGlnTyrLe : 271 ::!||||||:!!:!! !|||!!: !||| !! !|||:!:.!!! !|||!:!! ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 3158453 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 3158507 272 : uSerSerSerLeuIleLeuCysLeuCysValGlnLeuLeuThrLysLeuAlaPheM : 290 !! !|||! !! !:!::!!|||!!! !:!! ! ! !:!!|||:!!:!! ! | sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---M 3158508 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---A : 3158561 291 : etSerProGluPheIlePheIleValValTyrLeuGlyCysMetLeuThrGlnIle : 308 ||... :::|||::: |||:!!:!!|||! ! !|||! :!!||||||||| etAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 3158562 : TGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 3158615 309 : PheLeuPheCysTrpTyrGlyAsnGluValIleMet{G} >>>> Target Int : 321 |||! !!:!||||||||||||||||||||| ! {|} 83 bp PheTyrTyrCysTrpTyrGlyAsnGluVal---Lys{G}-+ 3158616 : TTTTACTATTGTTGGTACGGCAACGAAGTG---AAA{G}at............... : 3158654 322 : ron 1 >>>> {lu}SerSerGluIleSerSerAlaIleTyrLysMetAsnTrpG : 335 {||}||| !:!!:!! !!! ! !|||!:! ! ! :!!||| --{lu}SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpT 3158655 : ..........gt{AG}AGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGA : 3158776 336 : lnValLeuThrAsnLysThrLysLysAspLeuLeuPheMetLysThrGlnSerIle : 353 ! !|||!.!|||!!...!! !:!! ||||||.!!|||! !! !!:::!!:!: hrSerLeuAsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaVal 3158777 : CGTCTTTGAACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTG : 3158830 354 : LeuProIleLysPheThrSerGlyHisLeuIleGluLeuSerLeuAspSerPhe : 371 !||||||:!!||||||||| !|||:!!:!!...:!!!:!|||!!:|||||| ArgProIleGluPheThrSerIleHisValValSerValAsnLeuGluSerPhe 3158831 : AGGCCAATAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTC : 3158886 vulgar: gi|861722500|gb|AKO90002.1| 252 371 . KQ414646.1 3158452 3158886 + 176 M 36 108 G 1 0 M 29 87 G 1 0 M 1 3 S 0 1 5 0 2 I 0 79 3 0 2 S 1 2 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3158453 3158886 176 + . gene_id 3 ; sequence gi|861722500|gb|AKO90002.1| ; gene_orientation + KQ414646.1 exonerate:protein2genome:local cds 3158453 3158651 . + . KQ414646.1 exonerate:protein2genome:local exon 3158453 3158651 . + . insertions 0 ; deletions 2 KQ414646.1 exonerate:protein2genome:local splice5 3158652 3158653 . + . intron_id 1 ; splice_site "AT" KQ414646.1 exonerate:protein2genome:local intron 3158652 3158734 . + . intron_id 1 KQ414646.1 exonerate:protein2genome:local splice3 3158733 3158734 . + . intron_id 0 ; splice_site "GT" KQ414646.1 exonerate:protein2genome:local cds 3158735 3158886 . + . KQ414646.1 exonerate:protein2genome:local exon 3158735 3158886 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3158453 3158886 176 + . alignment_id 3 ; Query gi|861722500|gb|AKO90002.1| ; Align 3158453 253 108 ; Align 3158561 290 87 ; Align 3158648 320 3 ; Align 3158737 322 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722500|gb|AKO90002.1| odorant receptor 38 [Microplitis mediator] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 252 -> 333 Target range: 3155805 -> 3156048 253 : GlnPheSerGlnGluSerAsnAspLeuPheAlaProIleIlePheLeuGlnTyrLe : 271 ::!|||!!! !! !|||!!:! !|||! ! ! |||||| !|||!:! ArgPheThrAlaMetIleAsnGluGlnPheGluMetAlaIlePheThrGlnPheAl 3155806 : AGATTCACCGCTATGATAAACGAGCAATTCGAGATGGCGATTTTCACTCAATTCGC : 3155860 272 : uSerSerSerLeuIleLeuCysLeuCysValGlnLeuLeuThrLysLeuAlaPheM : 290 ! !|||!!!||| :!!|||!!! !:!! ! ||||||||| !! !! ! ! ! aValSerThrLeuAlaIleCysPheAsnLeuTyrLeuLeuThrGlySerAspValT 3155861 : GGTGAGTACGCTGGCGATATGCTTCAATCTTTACCTATTAACAGGATCAGATGTGA : 3155917 291 : etSerProGluPheIlePheIleValValTyrLeuGlyCysMetLeuThrGlnIle : 308 ! !! !..!!:!:!: |||:!!:!!||| !.!!|||||||||||||||||| hrProIleArgTyrValGluIleIleMetTyrSerSerCysMetLeuThrGlnIle 3155918 : CGCCGATTAGGTATGTGGAAATAATCATGTACAGCAGTTGCATGCTCACGCAAATA : 3155971 309 : PheLeuPheCysTrpTyrGlyAsnGluValIleMetGluSerSerGluIleSerSe : 327 |||:!!!:!|||||||||||||||||||||! :!!:!! !||| ! .!! !! PheIleTyrCysTrpTyrGlyAsnGluValLysLeuLysValSerTyrPheArgHi 3155972 : TTCATTTACTGCTGGTACGGGAACGAAGTTAAGCTGAAGGTTTCTTATTTTCGACA : 3156028 328 : rAlaIleTyrLysMetAsn : 333 !..! !||| !:!:||| sCysSerTyrLeuLeuAsn 3156029 : TTGTTCATATTTGCTAAAT : 3156048 vulgar: gi|861722500|gb|AKO90002.1| 252 333 . KQ414646.1 3155805 3156048 + 158 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3155806 3156048 158 + . gene_id 4 ; sequence gi|861722500|gb|AKO90002.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3155806 3156048 . + . KQ414646.1 exonerate:protein2genome:local exon 3155806 3156048 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3155806 3156048 158 + . alignment_id 4 ; Query gi|861722500|gb|AKO90002.1| ; Align 3155806 253 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722500|gb|AKO90002.1| odorant receptor 38 [Microplitis mediator] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 258 -> 318 Target range: 3150619 -> 3150799 259 : AsnAspLeuPheAlaProIleIlePheLeuGlnTyrLeuSerSerSerLeuIleLe : 277 .!.!!: !||| ! !|||||| !:!!||| !|||||||||!!!|||:!!:! GlnGluLysPheArgTrpIleIleGlyValGlnLeuLeuSerSerThrLeuValVa 3150620 : CAAGAGAAGTTCAGATGGATAATAGGCGTGCAGCTTTTATCGAGCACGCTGGTAGT : 3150674 278 : uCysLeuCysValGlnLeuLeuThrLysLeuAlaPheMetSerProGluPheIleP : 296 !|||!!! !:!! ! !|||.!!!!. ! !! !!:||| !!:!!!:!:!: lCysPheIleLeuTyrGluLeuAlaAsnThrProProIleSerSerLysTyrLeuG 3150675 : GTGTTTCATCCTGTACGAATTGGCGAACACGCCTCCAATCAGCTCCAAGTACCTGC : 3150731 297 : heIleValValTyrLeuGlyCysMetLeuThrGlnIlePheLeuPheCysTrpTyr : 314 .!!|||:!!||||||!.!||||||:!!||||||||||||!!!!:!||||||||| lnPheValLeuTyrLeuAlaCysMetMetThrGlnIlePhePheTyrCysTrpTyr 3150732 : AATTTGTCCTGTACCTGGCCTGTATGATGACGCAGATCTTCTTTTACTGCTGGTAC : 3150785 315 : GlyAsnGluVal : 318 |||.!.:!!:!! GlyGluGlnLeu 3150786 : GGCGAGCAGTTG : 3150799 vulgar: gi|861722500|gb|AKO90002.1| 258 318 . KQ414646.1 3150619 3150799 + 133 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3150620 3150799 133 + . gene_id 5 ; sequence gi|861722500|gb|AKO90002.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3150620 3150799 . + . KQ414646.1 exonerate:protein2genome:local exon 3150620 3150799 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3150620 3150799 133 + . alignment_id 5 ; Query gi|861722500|gb|AKO90002.1| ; Align 3150620 259 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722500|gb|AKO90002.1| odorant receptor 38 [Microplitis mediator] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 258 -> 318 Target range: 3180478 -> 3180658 259 : AsnAspLeuPheAlaProIleIlePheLeuGlnTyrLeuSerSerSerLeuIleLe : 277 |||||| !.!. !! !! !!:||| !|||!:!!!!.!!|||! !:!!:!::! AsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePheGlySerPheMetValIl 3180479 : AACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTTCGGAAGCTTTATGGTGAT : 3180533 278 : uCysLeuCysValGlnLeuLeuThrLysLeuAlaPheMetSerProGluPheIleP : 296 !|||||| !!:!! ! !||| !!!. !! !.!!:!:||| !!||||||:!! eCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleLeuSerThrGluPheLeuA 3180534 : CTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTCTCAGCACCGAATTCTTAG : 3180590 297 : heIleValValTyrLeuGlyCysMetLeuThrGlnIlePheLeuPheCysTrpTyr : 314 ! ::: ||||||... :::||| !|||! !||||||!:!||||||||| laThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPheLeuTyrCysTrpTyr 3180591 : CGACGAtattttatctgagctcgatACTGCTGCAGAGCTTTCTTTACTGTTGGTAC : 3180644 315 : GlyAsnGluVal : 318 |||||||||||| GlyAsnGluVal 3180645 : GGAAACGAAGTG : 3180658 vulgar: gi|861722500|gb|AKO90002.1| 258 318 . KQ414646.1 3180478 3180658 + 131 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180479 3180658 131 + . gene_id 6 ; sequence gi|861722500|gb|AKO90002.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180479 3180658 . + . KQ414646.1 exonerate:protein2genome:local exon 3180479 3180658 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180479 3180658 131 + . alignment_id 6 ; Query gi|861722500|gb|AKO90002.1| ; Align 3180479 259 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722494|gb|AKO90000.1| odorant receptor 36 [Microplitis mediator] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 150 -> 210 Target range: 3180140 -> 3180320 151 : LeuProTyrArgGlyTrpPheProTyrAsnTyrThrThrThrGlyValTyrTrpLe : 169 ||| !!|||||||||||||||||||||:!!|||||||||.!!! !:!!!:! || LeuThrTyrArgGlyTrpPheProTyrAspTyrThrThrAlaValLeuPheProLe 3180141 : CTAACCTACAGAGGCTGGTTCCCTTACGATTACACGACCGCCGTACTTTTTCCATT : 3180195 170 : uThrAlaValTyrGlnLeuTyrAlaIleCysSerAlaAlaSerIleAsnLeuAlaP : 188 |||| !!.! ||||||! ..!:!: ! ! !:!!!!!|||:!!:!!:!! uThrTyrAlaLeuGlnLeuLeuCysValLeuValTyrSerTrpIleHisValSerV 3180196 : GACATACGCTCTGCAGCTATTATGCGTGCTCGTATATTCCTGGATCCACGTTTCAG : 3180252 189 : heAspProLeuLeuProCysIleIleCysHisMetCysAlaGlnValHisIleLeu : 206 ! ||| !|||!!! ! ! :!::!: !!.:!!|||..!||| !! ! |||||| alAspIleLeuPhePheGlyLeuLeuMetGlnLeuCysCysGlnPheAspIleLeu 3180253 : TGGATATTCTCTTCTTCGGACTGTTGATGCAACTGTGCTGTCAATTCGAcattctc : 3180306 207 : LysTyrArgPhe : 210 |||||| PheSerArgPhe 3180307 : ttctctcgtttc : 3180320 vulgar: gi|861722494|gb|AKO90000.1| 150 210 . KQ414646.1 3180140 3180320 + 114 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180141 3180320 114 + . gene_id 1 ; sequence gi|861722494|gb|AKO90000.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180141 3180320 . + . KQ414646.1 exonerate:protein2genome:local exon 3180141 3180320 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180141 3180320 114 + . alignment_id 1 ; Query gi|861722494|gb|AKO90000.1| ; Align 3180141 151 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722490|gb|AKO89999.1| odorant receptor 35 [Microplitis mediator] Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 118 -> 212 Target range: 1946918 -> 1946639 119 : IleArgPheAsnThrLeuAlaTyrIleValPhePheGluAlaSerValThrValTy : 137 .!!|||!::||||||:!!!.!||| ...... |||..! ! !! PheArgTrpAsnThrIleGlyTyrTrpSerLeuLeuLeuIleSerThrPhePheIl 1946918 : TTTAGATGGAACACGATTGGCTACTGGAGtttactattaatttctacGTTCTTTAT : 1946864 138 : rThrValGlyLysIlePheGluAspArgProProGlyValLeuProCysArgAlaT : 156 !||| !!..!:!!!!. !||| ! ! ! !! !||| !! !||||||| eTyrValArgSerLeuLeuIleAspPheSerAsnArgLysLeuMetPheArgAlaT 1946863 : ATACGTGAGATCGCTTTTGATAGATTTTAGTAATAGAAAACTGATGTTTCGAGCAT : 1946807 157 : rpLeuProTyrAspTyrSerAsnAsnIleIleIleTyrTrpMetThrAlaSerGln : 174 ||:!!||||||||||||||| ! !|||!:! :!:||| ! !!!. rpIleProTyrAspTyrSer---ProAlaProIlePheIleLeuThrPheValHis 1946806 : GGATACCCTACGATTACTCC---CCTGCGCCCATTTTTATCCTTACCTTCGTCCAT : 1946756 175 : GlnLeuLeuThrValValMetThrAlaAsnValAspIleAlaTyrAspThrLeuPh : 193 ||| !:!!.!!!.!..!!!: !..!!.! !..!:!!.!! |||:!!|||!: GlnAlaIleAlaAlaThrIleCysCysThrSerSerValThrValAspSerLeuTy 1946755 : CAAGCTATAGCCGCGACGATATGTTGCACTTCGAGCGTCACTGTGGATTCTCTATA : 1946699 194 : eProGlyMetMetMetGlnValCysIleGlnIleAsnValLeuLysHisArgPheA : 212 ! !!|||:!!:!!!!:.!.:!!! ! !|||.!!.!.:!!|||:!!||||||.!.| rThrGlyLeuLeuIleAsnIleTyrCysGlnPheGluIleLeuGluHisArgLeuA 1946698 : CACTGGCTTGTTGATTAATATCTACTGCCAGTTCGAGATACTAGAACATCGTCTAA : 1946642 213 : rg : 212 || rg 1946641 : GG : 1946640 vulgar: gi|861722490|gb|AKO89999.1| 118 212 . KQ414661.1 1946918 1946639 - 109 M 44 132 G 1 0 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1946640 1946918 109 - . gene_id 1 ; sequence gi|861722490|gb|AKO89999.1| ; gene_orientation . KQ414661.1 exonerate:protein2genome:local cds 1946640 1946918 . - . KQ414661.1 exonerate:protein2genome:local exon 1946640 1946918 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local similarity 1946640 1946918 109 - . alignment_id 1 ; Query gi|861722490|gb|AKO89999.1| ; Align 1946919 119 132 ; Align 1946787 164 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722500|gb|AKO90002.1| odorant receptor 38 [Microplitis mediator] Target: KQ414661.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold107, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 222 Query range: 252 -> 387 Target range: 1946251 -> 1945695 253 : GlnPheSerGlnGluSerAsnAspLeuPheAlaProIleIlePheLeuGlnTyrLe : 271 ::!||||||:!!:!! !|||!!: !||| !! !|||:!:.!!! !|||!:!! ArgPheSerLysLysValAsnGluGluPheLysLeuIleLeuIleSerGlnPheCy 1946251 : AGATTTTCGAAAAAGGTGAACGAAGAATTCAAACTGATACTGATTTCTCAATTCTG : 1946197 272 : uSerSerSerLeuIleLeuCysLeuCysValGlnLeuLeuThrLysLeuAlaPheM : 290 !! !|||! !! !:!::!!|||!!! !:!! ! ! !:!!|||:!!:!! ! | sIleSerMetSerValIleCysPheAsnLeuTyrArgMetThrGlnIleLys---M 1946196 : CATAAGCATGTCGGTGATCTGCTTCAATCTTTACCGAATGACACAGATCAAA---A : 1946143 291 : etSerProGluPheIlePheIleValValTyrLeuGlyCysMetLeuThrGlnIle : 308 ||... :::|||::: |||:!!:!!|||! ! !|||! :!!||||||||| etAspThrLysPheValGluIleIleLeuTyrSerPheCysThrIleThrGlnIle 1946142 : TGGAcacgaaattcgtcgaaatcaTACTCTACTCTTTCTGCACTATCACGCAGATA : 1946089 309 : PheLeuPheCysTrpTyrGlyAsnGluValIleMetGlu >>>> Target Int : 322 |||! !!:!|||||||||||||||||||||! ! :!! 80 bp PheTyrTyrCysTrpTyrGlyAsnGluValLysAspLys++ 1946088 : TTTTACTATTGCTGGTACGGCAACGAAGTGAAAGATAAGgt............... : 1946045 323 : ron 1 >>>> SerSerGluIleSerSerAlaIleTyrLysMetAsnTrpGlnVa : 336 ||| !:!!:!! !!! ! !|||!:! ! ! :!!||| ! ++SerLeuGlnLeuProTyrMetIlePheHisSerAspTrpThrSe 1946044 : ..........agAGCCTCCAACTTCCATACATGATATTTCACAGCGACTGGACGTC : 1945925 337 : lLeuThrAsnLysThrLysLysAspLeuLeuPheMetLysThrGlnSerIleLeuP : 355 !|||!.!|||!!...!! !:!! ||||||.!!|||! !! !!:::!!:!: !| rLeuAsnAsnAsnValThrArgAlaLeuLeuIleMetMetArgArgAlaValArgP 1945924 : TTTGAACAACAACGTCACCAGAGCACTTTTAATCATGATGAGACGTGCAGTGAGGC : 1945868 356 : roIleLysPheThrSerGlyHisLeuIleGluLeuSerLeuAspSerPheThrLys : 373 |||||:!!||||||||| !|||:!!:!!...:!!!:!|||!!:||||||! ! ! roIleGluPheThrSerIleHisValValSerValAsnLeuGluSerPheMetAla 1945867 : CAATAGAGTTCACCAGTATTCACGTTGTCTCTGTGAATCTCGAATCCTTCATGGCA : 1945814 374 : >>>> Target Intron 2 >>>> LeuIleLysPheSerTyrSerAlaTyr : 382 74 bp :!!|||||| !||||||||||||!:! ++ ++ValIleLysThrSerTyrSerAlaPhe 1945813 : gt.........................agGTAATAAAAACTTCGTACTCCGCGTTC : 1945713 383 : AsnLeuLeuHisGln : 387 |||:!!:!!!!.||| AsnMetIleGlnGln 1945712 : AACATGATCCAACAA : 1945696 vulgar: gi|861722500|gb|AKO90002.1| 252 387 . KQ414661.1 1946251 1945695 - 222 M 36 108 G 1 0 M 32 96 5 0 2 I 0 76 3 0 2 M 52 156 5 0 2 I 0 70 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414661.1 exonerate:protein2genome:local gene 1945696 1946251 222 - . gene_id 1 ; sequence gi|861722500|gb|AKO90002.1| ; gene_orientation + KQ414661.1 exonerate:protein2genome:local cds 1946048 1946251 . - . KQ414661.1 exonerate:protein2genome:local exon 1946048 1946251 . - . insertions 0 ; deletions 1 KQ414661.1 exonerate:protein2genome:local splice5 1946046 1946047 . - . intron_id 1 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945968 1946047 . - . intron_id 1 KQ414661.1 exonerate:protein2genome:local splice3 1945968 1945969 . - . intron_id 0 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945812 1945967 . - . KQ414661.1 exonerate:protein2genome:local exon 1945812 1945967 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local splice5 1945810 1945811 . - . intron_id 2 ; splice_site "GT" KQ414661.1 exonerate:protein2genome:local intron 1945738 1945811 . - . intron_id 2 KQ414661.1 exonerate:protein2genome:local splice3 1945738 1945739 . - . intron_id 1 ; splice_site "AG" KQ414661.1 exonerate:protein2genome:local cds 1945696 1945737 . - . KQ414661.1 exonerate:protein2genome:local exon 1945696 1945737 . - . insertions 0 ; deletions 0 KQ414661.1 exonerate:protein2genome:local similarity 1945696 1946251 222 - . alignment_id 1 ; Query gi|861722500|gb|AKO90002.1| ; Align 1946252 253 108 ; Align 1946144 290 96 ; Align 1945968 322 156 ; Align 1945738 374 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722503|gb|AKO90003.1| odorant receptor 39 [Microplitis mediator] Target: KQ414667.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold102, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 296 -> 348 Target range: 801758 -> 801451 297 : SerThrArgSerGlnLysLeuMetValProLeuLeuLeuArgSerAlaIleProCysA : 316 .!!!:!|||! !...:!! !:!: ! !:!!:!!:!!|||||| !|||||||||! GlySerArgPheSerGlnSerLeuGlnIleMetMetMetArgSerArgIleProCysL 801758 : GGTAGTCGTTTCTCTCAGAGTCTTCAGATCATGATGATGCGCTCGAGGATACCATGCA : 801701 317 : rgIleThrAlaGlyLysMetPheGluMetSerLeuLysSerPheSerMet >>>> T : 333 :!|||||||||!.!|||.!.!:!...|||||||||:!!|||||||||! ! ysIleThrAlaAlaLysPheTyrSerMetSerLeuGluSerPheSerLys++ 801700 : AGATAACCGCCGCTAAATTCTACAGCATGTCCTTGGAGAGCTTCTCGAAGgt...... : 801648 334 : arget Intron 1 >>>> IleValLysThrSerPheSerTyrLeuThrValPheA : 345 151 bp :!!:!!!..|||||||||||||||!!!||||||.!!. ++ValLeuSerThrSerPheSerTyrPheThrValLeuT 801647 : ...................agGTACTCAGCACGTCTTTCTCCTACTTCACGGTCCTCA : 801463 346 : laSerMetArg : 348 !!:!!! !:! hrAlaThrLys 801462 : CAGCCACCAAA : 801452 vulgar: gi|861722503|gb|AKO90003.1| 296 348 . KQ414667.1 801758 801451 - 116 M 36 108 5 0 2 I 0 147 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414667.1 exonerate:protein2genome:local gene 801452 801758 116 - . gene_id 1 ; sequence gi|861722503|gb|AKO90003.1| ; gene_orientation + KQ414667.1 exonerate:protein2genome:local cds 801651 801758 . - . KQ414667.1 exonerate:protein2genome:local exon 801651 801758 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 801649 801650 . - . intron_id 1 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801500 801650 . - . intron_id 1 KQ414667.1 exonerate:protein2genome:local splice3 801500 801501 . - . intron_id 0 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801452 801499 . - . KQ414667.1 exonerate:protein2genome:local exon 801452 801499 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local similarity 801452 801758 116 - . alignment_id 1 ; Query gi|861722503|gb|AKO90003.1| ; Align 801759 297 108 ; Align 801500 333 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722484|gb|AKO89997.1| odorant receptor 33 [Microplitis mediator] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 320 -> 383 Target range: 1395326 -> 1395515 321 : LeuAspIleSerThrGlyIleTyrAspThrAsnTrpTyrHisLeuSerAsnAsnIl : 339 |||...||||||!.!!.! !|||..!:!! !||||||! !|||..! !.!. LeuSerIleSerAsnAlaAlaTyrSerSerProTrpTyrLeuLeuAspProGlnAs 1395327 : CTATCAATTAGCAATGCAGCATATAGCTCACCTTGGTACCTTCTGGATCCTCAAGA : 1395381 340 : eArgLysSerIleValIleIleLeuArgLysSerTyrArgProValThrMetThrS : 358 !||| ! ! !|||:!!:!!:!!:!!! !!:!||| ! |||! !:!!|||!!:|||: pArgHisIleIleIleLeuLeuMetIleArgSerGlnArgArgLeuThrIleThrA 1395382 : CAGACATATCATTATTCTTCTCATGATAAGATCTCAAAGACGATTAACAATCACCG : 1395438 359 : erGlyPhePheIleValLeuSerLeuGluSerPheThrLysValIleLysLeuAla : 376 !!||| |||!!:! !||||||||||||.!!|||.!!!!.|||! ! !||| ! laGlyLysPheMetAspLeuSerLeuGluGlyPheAlaAsnValSerLeuLeuPhe 1395439 : CTGGAAAATTTATGGACTTGTCTTTAGAAGGTTTTGCAAATGTAAGTCTACTTTTT : 1395492 377 : TyrThrIleTyrAsnValLeu : 383 ! ! !:!! :!!:!!||| SerTyrValMetHisMetLeu 1395493 : TCTTATGTTATGCATATGCTA : 1395515 vulgar: gi|861722484|gb|AKO89997.1| 320 383 . KQ414716.1 1395326 1395515 + 100 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1395327 1395515 100 + . gene_id 1 ; sequence gi|861722484|gb|AKO89997.1| ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1395327 1395515 . + . KQ414716.1 exonerate:protein2genome:local exon 1395327 1395515 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1395327 1395515 100 + . alignment_id 1 ; Query gi|861722484|gb|AKO89997.1| ; Align 1395327 321 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722530|gb|AKO90010.1| odorant receptor 46 [Microplitis mediator] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 353 -> 420 Target range: 1409046 -> 1409525 354 : HisSerGluGluIleHisValAlaValTyrSerCysAsnTrpThrAspLeuGluPr : 372 ...|||::: ||| !.!!!.!|||..!! ! !||| !:!!:!!.!. ! GlnSerLysLeuIleGlyAspThrAlaTyrGluPheLeuTrpTyrAsnMetHisSe 1409047 : cagagtaaactgattggagACACGGCGTATGAATTTCTTTGGTATAATATGCATTC : 1409101 373 : oHisGlnIleAlaGlnLeuIleIleIleLeuValArgAlaGlnArgProLeuGluI : 391 ! ! :!!! ! !! :!!:!::!!:!!:!!:!!|||:!!|||!:! !!!! . rLysGluSerArgLeuMetLeuLeuValIleLeuArgSerGlnLysGlyPheThrP 1409102 : GAAGGAAAGCCGACTTATGTTGCTTGTAATACTACGATCACAGAAAGGATTTACtt : 1409158 392 : leThrIleGlyLysPheAlaProAlaThrLeuAsnThrPheAlaGln >>>> Ta : 407 ..|||...|||||||||||| !:!!:!!.!.!:!|||||| heThrPheGlyLysPheAlaSerLeuSerMetGluSerPheAlaGly++ 1409159 : tcacttttggaaaatttgcaagtCTTTCCATGGAAAGTTTTGCAGGCgt....... : 1409208 408 : rget Intron 1 >>>> IleLeuLysThrSerAlaGlyTyrIleSerValLeu : 418 278 bp |||:!!|||.!!||||||..!||||||||||||||| ++IleMetLysAlaSerAlaSerTyrIleSerValLeu 1409209 : ..................agattATGAAAGCTTCTGCATCGTATATATCCGTATTG : 1409517 419 : LeuAla : 420 |||||| LeuAla 1409518 : CTCGCA : 1409525 vulgar: gi|861722530|gb|AKO90010.1| 353 420 . KQ414716.1 1409046 1409525 + 102 M 53 159 5 0 2 I 0 274 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1409047 1409525 102 + . gene_id 1 ; sequence gi|861722530|gb|AKO90010.1| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1409047 1409205 . + . KQ414716.1 exonerate:protein2genome:local exon 1409047 1409205 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1409206 1409207 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1409206 1409483 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1409482 1409483 . + . intron_id 0 ; splice_site "ag" KQ414716.1 exonerate:protein2genome:local cds 1409484 1409525 . + . KQ414716.1 exonerate:protein2genome:local exon 1409484 1409525 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1409047 1409525 102 + . alignment_id 1 ; Query gi|861722530|gb|AKO90010.1| ; Align 1409047 354 159 ; Align 1409484 407 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722503|gb|AKO90003.1| odorant receptor 39 [Microplitis mediator] Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 118 -> 169 Target range: 887621 -> 887774 119 : IleGluPheLeuValAspAlaAspLysTyrPhePheProLeuPheIleHisAsnTyrM : 138 :!:|||!:!! !:!!|||::::::|||||||||::: :!! !||| !||| ValGluTyrHisIleAspSerGluLysTyrPheTyrLeuIleThrAlaHisCysTyrA 887622 : GTGGAGTACCACATCgacagtgaaaaatatttttacctgATTACAGCTCATTGTTACG : 887679 139 : etGlyThrValAlaPheLeuThrIleIleIleAlaIleAspThrMetLeuMetValTy : 157 ..!|||||| !.!!||| ! !! !:!!!.! !|||||||||! !!!:||| laSerThrValLeuLeuLeuLeuGlnThrValValHisAspThrMetTyrIleValLe 887680 : CCTCGACAGTACTTCTTCTGCTTCAAACTGTCGTACACGACACAATGTACATTGTTCT : 887736 158 : rIleGlnHisGlyCysAlaLysPheAlaIleLeuGly : 169 :!!||||||||||||||| !||||||:!! !||| uValGlnHisGlyCysAlaLeuPheAlaValThrGly 887737 : GGTCCAACATGGCTGCGCTTTATTCGCAGTTACGGGG : 887774 vulgar: gi|861722503|gb|AKO90003.1| 118 169 . KQ414735.1 887621 887774 + 125 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 887622 887774 125 + . gene_id 1 ; sequence gi|861722503|gb|AKO90003.1| ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 887622 887774 . + . KQ414735.1 exonerate:protein2genome:local exon 887622 887774 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 887622 887774 125 + . alignment_id 1 ; Query gi|861722503|gb|AKO90003.1| ; Align 887622 119 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 138 Query range: 129 -> 213 Target range: 20577 -> 20325 130 : LeuIleCysValAlaThrValTyrIleValLeuProLeuMetSerProLeuLeuAspIle : 149 |||.!! ! !|||.!!:!!!:!:!! !:!!|||!!! !! !:!!||||||||| LeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAspIle 20577 : TTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATT : 20520 150 : IleIleProLeuAsnGluThrArgGluArgIleLeuProTyrProAlaGluTyrPheIle : 169 ! |||||||||:!!||||||:!!|||:!:!!! !||||||||| ! |||!::!!: TyrAlaProLeuAsnLysThrArgLysArgValPheValTyrProAlaTyrTyrTrpMet 20519 : TACGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATG : 20460 170 : AspIleGlnLysAsnPhePheMetLeuTyrProHisGlyAlaIleValThrProIleAla : 189 ||| !:!!:!! !!!:!.!.!!::!! !||| ! !.!!|||..! !!!:!.! AspProGluGlnTyrTyrMetIleMetIleIleHisIleMetPheValValIleMetVal 20459 : GATCCTGAGCAATACTACATGATAATGATAATACACATAATGTTCGTGGTGATCATGGTC : 20400 190 : LeuThrValLeuValGlyPheAspSerLeuTyrAlaGlyPheValGlnHisAlaCysSer : 209 ! !..!:!!!!! !!.!! !|||! ! !|||!.! ! !|||||||||||||||.!! CysValIlePheCysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGly 20399 : TGTGTCATATTCTGTGCTTGCGACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGC : 20340 210 : MetPheThrIle : 213 :!:!!..!!:!! LeuLeuAlaVal 20339 : TTATTGGCTGTC : 20326 vulgar: gi|861722527|gb|AKO90009.1| 129 213 . KQ414772.1 20577 20325 - 138 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20577 138 - . gene_id 1 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20577 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20577 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 20326 20577 138 - . alignment_id 1 ; Query gi|861722527|gb|AKO90009.1| ; Align 20578 130 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 132 Query range: 130 -> 220 Target range: 14148 -> 13878 131 : IleCysValAlaThrValTyrIleValLeuProLeuMetSerProLeuLeuAspIleIle : 150 ||| ! !!.!! !:!!!:!:!:..! !|||:!!! !!! !:!!|||||||||:!! IleValCysValIleLeuPheValThrThrProValThrProHisIleLeuAspIleLeu 14148 : ATCGTTTGTGTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATTTTGGACATTTTA : 14091 151 : IleProLeuAsnGluThrArgGluArgIleLeuProTyrProAlaGluTyrPheIleAsp : 170 :!!||| !||||||:!!|||!!: ! ! ! !||||||||| ! ||||||! !||| LeuProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAsp 14090 : CTACCGAAGAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGAC : 14031 171 : IleGlnLysAsnPhePheMetLeuTyrProHisGlyAlaIleValThrProIleAlaLeu : 190 !!.||| !! ! ! :!! ! !!||| !||| !|||! !! !:!:!.!!!! GluHisLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPhe 14030 : GAGCATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTT : 13971 191 : ThrValLeuValGlyPheAspSerLeuTyrAlaGlyPheValGlnHisAlaCysSerMet : 210 !|||! !|||!.!! !|||!!! !||| ! ! !!|||||||||!.!|||.!!:!! TyrValTyrValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeu 13970 : TACGTGTACGTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTG : 13911 211 : PheThrIleIleGlyArgArgLeuGluAsn : 220 !!..!!:!: !||| ::::::...::: LeuAlaValSerGly***LysIleArgSer 13910 : TTGGCCGTGTCCGGgtaaaaaattcgatcg : 13879 vulgar: gi|861722527|gb|AKO90009.1| 130 220 . KQ414772.1 14148 13878 - 132 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13879 14148 132 - . gene_id 2 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13879 14148 . - . KQ414772.1 exonerate:protein2genome:local exon 13879 14148 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13879 14148 132 - . alignment_id 2 ; Query gi|861722527|gb|AKO90009.1| ; Align 14149 131 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 129 Query range: 127 -> 215 Target range: 38030 -> 37769 128 : SerGlyLeuIleCysValAlaThrValTyrIleValLeuProLeuMetSerProLeuLeu : 147 !:!||||||.!!||| ! ..!:!!!:!! ! !:!! !!:!!! ! !!! !:!!||| AsnGlyLeuPheCysTyr---ValIlePheThrSerValAlaIleThrProArgValLeu 38030 : AACGGACTGTTTTGCTAC---GTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTC : 37976 148 : AspIleIleIleProLeuAsnGluThrArgGluArgIleLeuProTyrProAlaGluTyr : 167 |||:!!||| !||| !||||||:!!|||! ! ! !!!! !||||||||| ! ||| AspLeuIleSerProLysAsnGluSerArgGlyValAspPheIleTyrProAlaTyrTyr 37975 : GACCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTCATTTATCCTGCATACTAC : 37916 168 : PheIleAspIleGlnLysAsnPhePheMetLeuTyrProHisGlyAlaIleValThrPro : 187 !:!!||| :!!:!!:!!!:!!:!!!:||| !||| ! ! !|||! ! !! GlyLeuAspGluGluGluHisTyrTyrIleLeuMetGlyHisMetLeuCysValIleThr 37915 : GGTCTCGACGAGGAGGAACATTATTACATTCTGATGGGTCACATGCTCTGCGTGATAACT : 37856 188 : IleAlaLeuThrValLeuValGlyPheAspSerLeuTyrAlaGlyPheValGlnHisAla : 207 :!!!.!!!! !|||! !:!!..!! !|||!!!:!!||| !.!!.!!|||||||||||| ValValPhePheValTyrIleSerCysAspThrIleTyrMetSerIleValGlnHisAla 37855 : GTAGTGTTTTTCGTGTACATCTCCTGTGACACGATCTACATGAGCATCGTTCAACACGCG : 37796 208 : CysSerMetPheThrIleIleGly : 215 |||.!!:!:.!.!.!:!! !||| CysGlyLeuLeuAsnValSerGly 37795 : TGCGGATTACTGAACGTCTCTGGG : 37770 vulgar: gi|861722527|gb|AKO90009.1| 127 215 . KQ414772.1 38030 37769 - 129 M 6 18 G 1 0 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37770 38030 129 - . gene_id 3 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37770 38030 . - . KQ414772.1 exonerate:protein2genome:local exon 37770 38030 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 37770 38030 129 - . alignment_id 3 ; Query gi|861722527|gb|AKO90009.1| ; Align 38031 128 18 ; Align 38013 135 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 130 -> 215 Target range: 42727 -> 42472 131 : IleCysValAlaThrValTyrIleValLeuProLeuMetSerProLeuLeuAspIleIle : 150 |||||| ! !|||:!!!:!||| ! !|||! !!!: !!! !:!!! !|||:!!!!: IleCysCysPheThrMetPheIleSerAlaProTyrIleProHisValTyrAspValMet 42727 : ATATGTTGCTTCACAATGTTTATCTCTGCGCCTTATATACCGCATGTATATGATGTTATG : 42670 151 : IleProLeuAsnGluThrArgGluArgIleLeuProTyrProAlaGluTyrPheIleAsp : 170 :!! !! !||||||:!!|||:!! ! !!!! !||||||||| ! ||| !:!!||| LeuSerLysAsnGluSerArgLysLeuGlyPheIleTyrProAlaTyrTyrGlyValAsp 42669 : TTATCGAAAAACGAGTCACGAAAGTTGGGTTTCATTTACCCTGCCTATTATGGCGTTGAT : 42610 171 : IleGlnLysAsnPhePheMetLeuTyrProHisGlyAlaIleValThrProIleAlaLeu : 190 !.!.||| !!!:!!:! :!! !!||| !.!! !! ! ! !:!:!.!!!! GlnAspLysTyrTyrTyrTyrIleIleAlaHisMetThrSerGlyGlyLeuValValPhe 42609 : CAAGACAAGTATTATTACTATATAATAGCTCACATGACATCTGGGGGCTTAGTGGTGTTT : 42550 191 : ThrValLeuValGlyPheAspSerLeuTyrAlaGlyPheValGlnHisAlaCysSerMet : 210 !..!!!!:!!..!! !|||!!!:!!||| !..!.!!|||||||||||||||.!!:!! PheThrPheIleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeu 42549 : TTCACCTTTATCTCCTGCGACACGATTTACATGAATATCGTGCAACACGCGTGCGGATTG : 42490 211 : PheThrIleIleGly : 215 !!. !||| !||| LeuLeuIleSerGly 42489 : TTGTTGATTTCTGGG : 42473 vulgar: gi|861722527|gb|AKO90009.1| 130 215 . KQ414772.1 42727 42472 - 127 M 85 255 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42473 42727 127 - . gene_id 4 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42473 42727 . - . KQ414772.1 exonerate:protein2genome:local exon 42473 42727 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 42473 42727 127 - . alignment_id 4 ; Query gi|861722527|gb|AKO90009.1| ; Align 42728 131 255 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 134 -> 215 Target range: 24419 -> 24176 135 : ThrValTyrIleValLeuProLeuMetSerProLeuLeuAspIleIleIleProLeuAsn : 154 ..!:!!!:!! !!.!:!! !!:!!! !!! !:!!||||||:!!||| ||| !||| ValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 24419 : GTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAAC : 24362 155 : GluThrArgGluArgIleLeuProTyrProAlaGluTyrPheIleAspIleGlnLysAsn : 174 |||:!!|||! ! ! !!!! !|||||||||.!.||| !:!!||| !:!!:!!:!! GluSerArgGlyValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHis 24361 : GAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCAT : 24302 175 : PhePheMetLeuTyrProHisGlyAlaIleValThrProIleAlaLeuThrValLeuVal : 194 !:!!:! ||| !||| ! ! !|||! ! !!:!!!.!!!! !|||! !:!! TyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIle 24301 : TACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATC : 24242 195 : GlyPheAspSerLeuTyrAlaGlyPheValGlnHisAlaCysSerMetPheThrIleIle : 214 ..!! !|||!!!:!!||| !..!.!!|||||||||||||||.!!:!:!!.!.!:!! ! SerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSer 24241 : TCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCT : 24182 215 : Gly : 215 ||| Gly 24181 : GGG : 24177 vulgar: gi|861722527|gb|AKO90009.1| 134 215 . KQ414772.1 24419 24176 - 126 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24177 24419 126 - . gene_id 5 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24177 24419 . - . KQ414772.1 exonerate:protein2genome:local exon 24177 24419 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 24177 24419 126 - . alignment_id 5 ; Query gi|861722527|gb|AKO90009.1| ; Align 24420 135 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 134 -> 215 Target range: 29598 -> 29355 135 : ThrValTyrIleValLeuProLeuMetSerProLeuLeuAspIleIleIleProLeuAsn : 154 ..!:!!!:!! ! !:!! !!:!!! !!! !:!!||||||:!!||| ||| !||| ValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 29598 : GTTATATTCACCTCAGTGGCGATAACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAAC : 29541 155 : GluThrArgGluArgIleLeuProTyrProAlaGluTyrPheIleAspIleGlnLysAsn : 174 |||:!!|||! ! ! !!!! !||||||||| ! ||| !:!!||| !:!!:!!:!! GluSerArgGlyValGlyPheIleTyrProAlaTyrTyrGlyLeuAspGluGluGluHis 29540 : GAATCGCGCGGAGTGGGCTTCATTTATCCTGCATACTACGGTCTTGACGAAGAGGAGCAT : 29481 175 : PhePheMetLeuTyrProHisGlyAlaIleValThrProIleAlaLeuThrValLeuVal : 194 !:!!:! ||| !||| ! ! !|||! ! !!:!!!.!!!! !|||! !:!! TyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyrIle 29480 : TACTACTATCTGATGGGTCACATGCTTTCCGTGATAACCGTCGTGTTTTTCGTCTACATC : 29421 195 : GlyPheAspSerLeuTyrAlaGlyPheValGlnHisAlaCysSerMetPheThrIleIle : 214 ..!! !|||!!!:!!||| !..! !!|||||||||||||||.!!:!:!!.!.!:!! ! SerCysAspThrIleTyrMetAsnValValGlnHisAlaCysGlyLeuLeuAsnValSer 29420 : TCCTGTGACACGATCTATATGAATGTCGTGCAACACGCGTGTGGATTATTGAACGTCTCT : 29361 215 : Gly : 215 ||| Gly 29360 : GGG : 29356 vulgar: gi|861722527|gb|AKO90009.1| 134 215 . KQ414772.1 29598 29355 - 123 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29356 29598 123 - . gene_id 6 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29356 29598 . - . KQ414772.1 exonerate:protein2genome:local exon 29356 29598 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 29356 29598 123 - . alignment_id 6 ; Query gi|861722527|gb|AKO90009.1| ; Align 29599 135 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 140 -> 215 Target range: 33637 -> 33412 141 : ProLeuMetSerProLeuLeuAspIleIleIleProLeuAsnGluThrArgGluArgIle : 160 |||!!!!!: !!! !!!!:!!|||:!! :!: !! !||||||:!!|||:!! !! ! ProPheIleProHisPheIleAspValAlaLeuSerLysAsnGluSerArgLysLeuSer 33637 : CCTTTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAACGAGTCACGAAAATTAAGT : 33580 161 : LeuProTyrProAlaGluTyrPheIleAspIleGlnLysAsnPhePheMetLeuTyrPro : 180 ||| !||||||||| ! ||| !|||||| ...||| :::::: ||| !! LeuMetTyrProAlaTyrTyrGlyIleAspGlnAspLysTyrTyrTyrTyrLeuMetAla 33579 : TTGATGTACCCTGCCTATTACGGCATTGACCAGGacaagtattattattatctaatgGCT : 33520 181 : HisGlyAlaIleValThrProIleAlaLeuThrValLeuValGlyPheAspSerLeuTyr : 200 ||| ! !! !!.! ! !! !.!!!! !|||!!!:!!..!! !|||!!!:!!||| HisMetMetSerAlaGlyAlaAlaValPhePheValPheMetSerCysAspThrIleTyr 33519 : CACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATGTCCTGCGACACGATTTAT : 33460 201 : AlaGlyPheValGlnHisAlaCysSerMetPheThrIleIleGly : 215 !..!.!!|||||||||||||||.!!:!!!!. !||| !||| MetAsnIleValGlnHisAlaCysGlyLeuLeuPheIleSerGly 33459 : ATGAATATCGTTCAACACGCGTGCGGATTGTTGTTCATTTCCGGG : 33413 vulgar: gi|861722527|gb|AKO90009.1| 140 215 . KQ414772.1 33637 33412 - 119 M 75 225 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33413 33637 119 - . gene_id 7 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33413 33637 . - . KQ414772.1 exonerate:protein2genome:local exon 33413 33637 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 33413 33637 119 - . alignment_id 7 ; Query gi|861722527|gb|AKO90009.1| ; Align 33638 141 225 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722503|gb|AKO90003.1| odorant receptor 39 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 102 Query range: 79 -> 167 Target range: 20586 -> 20325 80 : ThrGlyAlaLeuTyrGlyThrLeuAlaProLeuValLeuValProIleThrProLeuIle : 99 |||!.! !|||!:! ! !! !||| !!!!:!!! !||||||.!!.!!|||:!!||| ThrAlaHisLeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIle 20586 : ACAGCGCATTTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATC : 20529 100 : LeuAspValIleAlaProMetAsnGluSerTyrProLysHisLeuMetPheGlnGlnIle : 119 ||||||:!! !||||||:!!|||:!!!!! !|||!.!:!!.!. !! ! ! ! ! LeuAspIleTyrAlaProLeuAsnLysThr---ArgLysArgValPheValTyrProAla 20528 : TTGGACATTTACGCGCCACTGAACAAAACG---AGAAAACGTGTGTTCGTTTATCCAGCC : 20472 120 : GluPheLeuValAspAlaAspLysTyrPhePheProLeuPheIleHisAsnTyrMetGly : 139 ! !:!! !:!!||| !!!!::!!|||!:!.!. !:!!.!.||||||! .!.! ! TyrTyrTrpMetAspProGluGlnTyrTyrMetIleMetIleIleHisIleMetPheVal 20471 : TATTACTGGATGGATCCTGAGCAATACTACATGATAATGATAATACACATAATGTTCGTG : 20412 140 : ThrValAlaPheLeuThrIleIleIleAlaIleAspThrMetLeuMetValTyrIleGln : 159 ..!:!! ! !!! !..!|||.!! !||| !|||! !! ! !:!! ! !:!:||| ValIleMetValCysValIlePheCysAlaCysAspMetAsnTyrValTyrAlaValGln 20411 : GTGATCATGGTCTGTGTCATATTCTGTGCTTGCGACATGAACTACGTGTACGCTGTGCAG : 20352 160 : HisGlyCysAlaLysPheAlaIle : 167 |||!.!|||!.! !!!.|||:!! HisAlaCysGlyLeuLeuAlaVal 20351 : CACGCATGCGGCTTATTGGCTGTC : 20326 vulgar: gi|861722503|gb|AKO90003.1| 79 167 . KQ414772.1 20586 20325 - 102 M 30 90 G 1 0 M 57 171 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20586 102 - . gene_id 1 ; sequence gi|861722503|gb|AKO90003.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20586 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20586 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 20326 20586 102 - . alignment_id 1 ; Query gi|861722503|gb|AKO90003.1| ; Align 20587 80 90 ; Align 20497 111 171 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 334 -> 391 Target range: 1345594 -> 1345843 335 : AlaLysTrpTyrAspTyrProGlnLysMetLysProLeuIleIleLeuMetLeuMe : 353 ::!!!.|||||||||! |||.!.||| ! !! !! !:!!|||!!! :!! SerAsnTrpTyrAspLeuProAspLysTyrThrArgSerLeuIlePheCysIleAl 1345595 : AGTAATTGGTACGATTTACCAGATAAATACACGCGATCGTTAATATTTTGCATCGC : 1345649 354 : tArgGlyLysArgValSerThrValSerAlaGlyLysIleTyrValMetSerIleG : 372 |||..!:!!!:! !||| !:!!!!!|||||||||.!!||||||.!.|||:!!| aArgSerGlnLysProSerTyrLeuThrAlaGlyLysPheTyrValPheSerLeuG 1345650 : TCGCTCTCAAAAGCCGTCGTACCTAACAGCTGGCAAGTTCTACGTGTTCTCGTTAG : 1345706 373 : luAsnPheSerSer >>>> Target Intron 1 >>>> ValIleLysAlaS : 381 ||!..|||.!!! ! 78 bp :!!:!!||||||| luThrPheGlyIle++ ++IleValLysAlaS 1345707 : AAACATTCGGCATCgt.........................agATAGTAAAAGCGT : 1345811 382 : erMetSerTyrPheAlaValLeuThrSerMet : 391 |||||:!!|||.!!:!!||||||! !|||!!: erMetAlaTyrLeuSerValLeuLysSerIle 1345812 : CGATGGCCTATCTTTCCGTTCTGAAAAGCATT : 1345843 vulgar: gi|861722527|gb|AKO90009.1| 334 391 . KQ414782.1 1345594 1345843 + 122 M 42 126 5 0 2 I 0 74 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345595 1345843 122 + . gene_id 1 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345595 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345595 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345843 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345843 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345595 1345843 122 + . alignment_id 1 ; Query gi|861722527|gb|AKO90009.1| ; Align 1345595 335 126 ; Align 1345799 377 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722524|gb|AKO90008.1| odorant receptor 44 [Microplitis mediator] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 324 -> 392 Target range: 1345564 -> 1345846 325 : SerAsnLysValCysGluAlaTyrTrpAsnCysGluTrpTyrAsnMetProGlnAs : 343 |||::!:!!:!! :!!|||! !!:: ! !!.!.||||||:!!:!:|||.!. ! SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 344 : pCysValLysAspIleIleTyrCysIleValArgSerGlnArgProLeuAlaLeuG : 362 ! !..!::!...:!!|||!:!||||||!.!|||||||||!:!|||! ! !||| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 363 : lnAlaGlyLysPheSerThrPheSerIleValThrLeuThrAsp >>>> Targe : 377 !||||||||||||! !..!||||||:!!! !|||!!! ! ! hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIle++ 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCgt.......... : 1345723 378 : t Intron 1 >>>> ValThrLysThrAlaLeuSerTyrLeuSerValLeuArg : 389 78 bp :!!..!|||.!!:!!:!!:!!|||||||||||||||!:! ++IleValLysAlaSerMetAlaTyrLeuSerValLeuLys 1345724 : ...............agATAGTAAAAGCGTCGATGGCCTATCTTTCCGTTCTGAAA : 1345835 390 : AsnPheLeu : 392 !:!.!!:!! SerIleIle 1345836 : AGCATTATC : 1345846 vulgar: gi|861722524|gb|AKO90008.1| 324 392 . KQ414782.1 1345564 1345846 + 136 M 52 156 5 0 2 I 0 74 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345846 136 + . gene_id 1 ; sequence gi|861722524|gb|AKO90008.1| ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345565 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345846 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345846 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345846 136 + . alignment_id 1 ; Query gi|861722524|gb|AKO90008.1| ; Align 1345565 325 156 ; Align 1345799 377 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722506|gb|AKO90004.1| odorant receptor 40 [Microplitis mediator] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 331 -> 383 Target range: 1345558 -> 1345714 332 : PheGluSerSerIleIleGlyGlnSerTyrTyrLysSerGluTrpTyrLysLeuSe : 350 ||| !!|||||| !!!: !|||:!!! !||| |||.!.|||||| ! ||| ! Phe***SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuPr 1345559 : TTCTAGAGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACC : 1345613 351 : rGlnAspLysSerArgSerLeuMetPheIleGlyHisArgAlaArgArgProLeuL : 369 !.!. ! ! !!!|||||||||!!:||| ! ! !|||:!!!:!!:!|||! ! oAspLysTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerT 1345614 : AGATAAATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGT : 1345670 370 : ysIleThrAlaGlyLysPheCysAlaPheSerArgAsnLeuPhe : 383 ! :!!|||||||||||||||! !!.!|||||| !.!. !||| yrLeuThrAlaGlyLysPheTyrValPheSerLeuGluThrPhe 1345671 : ACCTAACAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTC : 1345714 vulgar: gi|861722506|gb|AKO90004.1| 331 383 . KQ414782.1 1345558 1345714 + 100 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345559 1345714 100 + . gene_id 1 ; sequence gi|861722506|gb|AKO90004.1| ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345559 1345714 . + . KQ414782.1 exonerate:protein2genome:local exon 1345559 1345714 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345559 1345714 100 + . alignment_id 1 ; Query gi|861722506|gb|AKO90004.1| ; Align 1345559 332 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722487|gb|AKO89998.1| odorant receptor 34 [Microplitis mediator] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 130 Query range: 322 -> 392 Target range: 1345558 -> 1345846 323 : PheGluSerThrLysValCysGluAlaTyrTrpAsnCysGlyTrpTyrAsnMetPr : 341 ||| !!|||:!!:!!:!! :!!|||! !!:: ! !!..!||||||:!!:!:|| Phe***SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuPr 1345559 : TTCTAGAGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACC : 1345613 342 : oArgGluHisIleAsnAspIleMetTyrCysIleValArgSerGlnLysProLeuA : 360 | !:!!:!!! ......:!!!!:!:!||||||!.!|||||||||||||||! ! oAspLysTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerT 1345614 : AGATAAATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGT : 1345670 361 : laLeuGlnAlaGlyLysPheAlaTyrPheGlyAsnSerThrLeuThrAsp >>>> : 377 !||| !|||||||||||| ! |||..! ..!|||!!! ! ! yrLeuThrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIle++ 1345671 : ACCTAACAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCgt.... : 1345723 378 : Target Intron 1 >>>> ValThrArgThrAlaMetGlyTyrLeuSerVal : 387 78 bp :!!..!!:!.!!:!!|||!.!|||||||||||| ++IleValLysAlaSerMetAlaTyrLeuSerVal 1345724 : .....................agATAGTAAAAGCGTCGATGGCCTATCTTTCCGTT : 1345829 388 : LeuArgAsnPheLeu : 392 |||!:!!:!.!!:!! LeuLysSerIleIle 1345830 : CTGAAAAGCATTATC : 1345846 vulgar: gi|861722487|gb|AKO89998.1| 322 392 . KQ414782.1 1345558 1345846 + 130 M 54 162 5 0 2 I 0 74 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345559 1345846 130 + . gene_id 1 ; sequence gi|861722487|gb|AKO89998.1| ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345559 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345559 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345846 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345846 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345559 1345846 130 + . alignment_id 1 ; Query gi|861722487|gb|AKO89998.1| ; Align 1345559 323 162 ; Align 1345799 377 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 185 Query range: 133 -> 215 Target range: 26234 -> 25988 134 : AlaThrValTyrIleValLeuProLeuMetSerProLeuLeuAspIleIleIleProLeu : 153 |||.!!:!!!:!!!: !||||||!!!:!!||||||:!!|||||||||:!!!!:|||||| AlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeu 26234 : GCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTG : 26177 154 : AsnGluThrArgGluArgIleLeuProTyrProAlaGluTyrPheIleAspIleGlnLys : 173 ||||||||||||! !|||:!:!!! !||||||||| ! ||||||:!!||| .!.||| AsnGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLys 26176 : AACGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAA : 26117 174 : AsnPhePheMetLeuTyrProHisGlyAlaIleValThrProIleAlaLeuThrValLeu : 193 !! !!:!:!!:!! !||| ! !:!!|||..! !!!: !:!!:!!|||!!! TyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPhe 26116 : TATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTC : 26057 194 : ValGlyPheAspSerLeuTyrAlaGlyPheValGlnHisAlaCysSerMetPheThrIle : 213 !!.!! !|||:!! !|||!.! ! !|||||||||||||||.!!:!!!!..!!||| CysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIle 26056 : TGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATT : 25997 214 : IleGly : 215 !||| AlaGly 25996 : GCAGGG : 25989 vulgar: gi|861722527|gb|AKO90009.1| 133 215 . LHQN01017803.1 26234 25988 - 185 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26234 185 - . gene_id 1 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26234 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26234 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26234 185 - . alignment_id 1 ; Query gi|861722527|gb|AKO90009.1| ; Align 26235 134 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 109 -> 215 Target range: 30541 -> 29370 110 : GluIleLeuArgAsnAspGly{Ar} >>>> Target Intron 1 >>>> {g}Ile : 118 :!!||||||||||||||||||{||} 856 bp {|}||| GlnIleLeuArgAsnAspGly{Ar}++ +-{g}Ile 30541 : CAAATTTTGCGGAACGATGGC{CG}gt.........................at{a}att : 29661 119 : HisLysIleIleMetAspValTyrPheSerGlyLeuIleCysValAlaThrValTyrIle : 138 ::: !||| !:!|||:!!.!!||| ! ..!:!!!:!! ! ThrPheSerSerLeuTyrValAlaAlaAsnGlyIlePheCysTyr---ValLeuPheThr 29660 : acattttcttctctataTGTCGCAGCAAATGGAATCTTCTGCTAC---GTTCTCTTCACC : 29604 139 : ValLeuProLeuMetSerProLeuLeuAspIleIleIleProLeuAsnGluThrArgGlu : 158 !.!:!! !!:!!! !!! !:!!||||||:!!||| ||| !||||||:!!|||! ! AlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGly 29603 : GCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGA : 29544 159 : ArgIleLeuProTyrProAlaGluTyrPheIleAspIleGlnLysAsnPhePheMetLeu : 178 ! !!!! !|||||||||.!.||| !:!!||| !:!!:!!:!!!:!!:! ||| ValGlyPheIleTyrProAlaAsnTyrGlyValAspGluGluGluHisTyrTyrTyrLeu 29543 : GTGGGCTTCATTTATCCTGCCAACTACGGCGTCGACGAAGAGGAGCATTACTACTATCTG : 29484 179 : TyrProHisGlyAlaIleValThrProIleAlaLeuThrValLeuValGlyPheAspSer : 198 !||| ! ! !|||! ! !!:!!!.!!!! !|||! !:!!..!! !|||!!! MetGlyHisMetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThr 29483 : ATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGTGACACG : 29424 199 : LeuTyrAlaGlyPheValGlnHisAlaCysSerMetPheThrIleIleGly : 215 :!!||| !..!.!!|||||||||||||||.!!:!:!!.!.!:!! !||| IleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSerGly 29423 : ATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCTGGG : 29371 vulgar: gi|861722527|gb|AKO90009.1| 109 215 . LHQN01017803.1 30541 29370 - 131 M 7 21 S 0 2 5 0 2 I 0 852 3 0 2 S 1 1 M 16 48 G 1 0 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29371 30541 131 - . gene_id 2 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation + LHQN01017803.1 exonerate:protein2genome:local cds 30519 30541 . - . LHQN01017803.1 exonerate:protein2genome:local exon 30519 30541 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local splice5 30517 30518 . - . intron_id 1 ; splice_site "GT" LHQN01017803.1 exonerate:protein2genome:local intron 29663 30518 . - . intron_id 1 LHQN01017803.1 exonerate:protein2genome:local splice3 29663 29664 . - . intron_id 0 ; splice_site "at" LHQN01017803.1 exonerate:protein2genome:local cds 29371 29662 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29371 29662 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 29371 30541 131 - . alignment_id 2 ; Query gi|861722527|gb|AKO90009.1| ; Align 30542 110 21 ; Align 29662 118 48 ; Align 29614 135 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 131 Query range: 121 -> 220 Target range: 14212 -> 13915 122 : IleMetAspValTyrPheSerGlyLeuIleCysValAlaThrValTyrIleValLeuPro : 141 |||:!: ! !! .!.:!!..! !||| ! !!.!! !:!!!:!:!: ! !||| IleValLysTyrSerIleAlaAsnAlaIleValCysValIleLeuPheValSerThrPro 14212 : ATTGTCAAATATTCGATAGCGAACGCGATCGTTTGTGTCATCCTGTTCGTGTCGACGCCG : 14155 142 : LeuMetSerProLeuLeuAspIleIleIleProLeuAsnGluThrArgGluArgIleLeu : 161 :!!! !!! !:!!|||||||||:!!:!!||| !||||||:!!|||!!: ! ! ! ValThrProHisIleLeuAspIleLeuLeuProLysAsnGluSerArgAspValAlaTyr 14154 : GTGACACCGCATATTTTGGACATTTTACTACCGAAGAACGAGTCACGAGACGTAGCGTAC : 14095 162 : ProTyrProAlaGluTyrPheIleAspIleGlnLysAsnPhePheMetLeuTyrProHis : 181 !||||||||| ! ||||||! !||| !!.||| !! ! ! :!! ! !!||| IleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspValTyrIleIleThrHis 14094 : ATTTATCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGTGTACATAATTACGCAC : 14035 182 : GlyAlaIleValThrProIleAlaLeuThrValLeuValGlyPheAspSerLeuTyrAla : 201 !||| !|||! !! !:!:!.!!!! !|||! !|||!.!! !|||!!! !||| ! MetAlaSerValIleLeuValValPheTyrValTyrValAlaCysAspThrSerTyrIle 14034 : ATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTACGTCGCTTGTGACACCAGTTACATA : 13975 202 : GlyPheValGlnHisAlaCysSerMetPheThrIleIleGlyArgArgLeuGluAsn : 220 ! !!|||||||||!.!|||.!!:!!!!..!!:!: !||| ::::::...::: TyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly***LysIleArgSer 13974 : TACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgtaaaaaattcgatcg : 13916 vulgar: gi|861722527|gb|AKO90009.1| 121 220 . LHQN01017803.1 14212 13915 - 131 M 99 297 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13916 14212 131 - . gene_id 3 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13916 14212 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13916 14212 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13916 14212 131 - . alignment_id 3 ; Query gi|861722527|gb|AKO90009.1| ; Align 14213 122 297 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722500|gb|AKO90002.1| odorant receptor 38 [Microplitis mediator] Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 249 -> 330 Target range: 4394986 -> 4395226 250 : IleIleLeuGlnPheSerGlnGluSerAsnAspLeuPheAlaProIleIlePheLe : 268 :!!:!!! !... !! !.!.!:: |||:::|||......||||||||||||:! LeuLeuTyrSerValValAsnAspValAsnAsnLeuLeuThrProIleIlePheMe 4394987 : CTTTTATACAGCGTTGTGAACGacgtgaataatttattaacaccCATCATTTTCAT : 4395041 269 : uGlnTyrLeuSerSerSerLeuIleLeuCysLeuCysValGlnLeuLeuThrLysL : 287 !||| !|||!!!|||.!!:!! :!!|||||| !!! ! !:!!! ! ! tGlnLeuLeuThrSerGlyIleGluIleCysLeuSerGlyPheAlaValIleAspA 4395042 : GCAACTTCTTACGAGCGGAATAGAGATTTGTTTGAGTGGATTCGCGGTGATCGATA : 4395098 288 : euAlaPheMetSerProGluPheIlePheIleValValTyrLeuGlyCysMetLeu : 305 !!.! ! .!! !!!!:.!!:!! .!!||| !|||||| !! ||| ! snGly---ThrGlyThrAspLeuLeuLysPheValSerTyrLeuThrSerMetGly 4395099 : ACGGC---ACCGGTACCGATCTTCTCAAATTTGTGTCTTATTTAACCTCGATGGGG : 4395149 306 : ThrGlnIlePheLeuPheCysTrpTyrGlyAsnGluValIleMetGluSerSerGl : 324 ..!|||:!!!!.|||!::|||||| !|||.!. :!!:!!...||||||! !|| ValGlnLeuLeuLeuTrpCysTrpProGlyGluIleLeuValGlnGluSerLeuGl 4395150 : GTGCAACTTTTGCTATGGTGTTGGCCTGGTGAAATTCTCGTTCAAGAGAGTTTAGA : 4395206 325 : uIleSerSerAlaIleTyr : 330 ||||.!! !!.!:!!||| uIleGlyHisValValTyr 4395207 : AATAGGTCATGTAGTCTAT : 4395226 vulgar: gi|861722500|gb|AKO90002.1| 249 330 . KQ414784.1 4394986 4395226 + 102 M 39 117 G 1 0 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4394987 4395226 102 + . gene_id 1 ; sequence gi|861722500|gb|AKO90002.1| ; gene_orientation . KQ414784.1 exonerate:protein2genome:local cds 4394987 4395226 . + . KQ414784.1 exonerate:protein2genome:local exon 4394987 4395226 . + . insertions 0 ; deletions 1 KQ414784.1 exonerate:protein2genome:local similarity 4394987 4395226 102 + . alignment_id 1 ; Query gi|861722500|gb|AKO90002.1| ; Align 4394987 250 117 ; Align 4395104 290 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722524|gb|AKO90008.1| odorant receptor 44 [Microplitis mediator] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 323 -> 388 Target range: 34381 -> 34659 324 : GluSerAsnLysValCysGluAlaTyrTrpAsnCysGluTrpTyrAsnMetProGlnAsp : 343 :!!|||!..:!!:!! !!.!.:!! !!::.!.! .!.|||||||||:!: !!! GlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProPro 34382 : CAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCA : 34439 344 : CysValLysAspIleIleTyrCysIleValArgSerGlnArgProLeuAlaLeuGlnAla : 363 !.!||| !:!!:!!!:! !!!: !|||!!! |||||||||..!||| ||| GluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeuThrAla 34440 : GAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCA : 34499 364 : GlyLysPheSerThrPheSerIleValThrLeuThrAsp >>>> Target Intron : 377 |||||||||||||||||||||!!:! !! !!!!!:! ! 83 bp GlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34500 : GGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt................... : 34543 378 : 1 >>>> ValThrLysThrAlaLeuSerTyrLeuSerValLeu : 388 ::: !|||||||||:!!.!!||||||||||||||| ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeu 34544 : ......agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTC : 34659 vulgar: gi|861722524|gb|AKO90008.1| 323 388 . KQ414804.1 34381 34659 + 119 M 53 159 5 0 2 I 0 79 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34382 34659 119 + . gene_id 1 ; sequence gi|861722524|gb|AKO90008.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34382 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34382 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34659 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34659 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34382 34659 119 + . alignment_id 1 ; Query gi|861722524|gb|AKO90008.1| ; Align 34382 324 159 ; Align 34624 377 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722530|gb|AKO90010.1| odorant receptor 46 [Microplitis mediator] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 117 -> 273 Target range: 31113 -> 31578 118 : ArgLysAlaIleAlaArgIleValGluAlaValLysSerAspTrpLeuGluProLysThr : 137 ...||||||.!! !! !:!!:!!:!!:!! !! ! ..!|||||| ! !!!:!||| AsnLysAlaPheLysProValIleLysSerPheTyrAspAspTrpLysThrSerArgThr 31114 : aacaaagcttTCAAGCCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACc : 31171 138 : GluAlaGluArgLysIleMetArgArgTyrAlaArgIleAlaArgIleMetMetValCys : 157 ::: |||:::::: !||| !!:! |||!:!.!!|||!:! !!!: :!! LysGluGluLysGluThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIle--- 31172 : aaggaggagaaggagacCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATC--- : 31231 158 : GlyLeuSerAsnIleAlaTyrAsnLeuIleThrPheHisGlySerValLeuPheGlyPhe : 177 !!! !||| :!!.!!! !.!:!!:!!||| !!:!! !|||:!!! ! !!.!! TrpCysSerValLeuThrLeuThrMetValThrValTyrLeuSerLeuArgAlaTrpIle 31232 : TGGTGCTCAGTATTAACCTTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATC : 31288 178 : ValTyrArgThrValAsnAsnIleThrAspIleGluGlyTyrLeuIleProThrGlnSer : 197 :!!|||!:! :!!:!!!.. !!.!.!.! !:!!! ! !|||:!!! ! !! .!! IleTyrGln---LeuAspArgAlaAsnGlnLysGlnAspArgLeuLeuLeuTyrProGly 31289 : ATCTACCAG---CTTGATAGGGCAAACCAGAAACAGGATCGTCTGCTCCTGTACCCTGGC : 31345 198 : ValPheProPheAspIleThrIleGlyTyrArgCysTrpIleIleArgIleValGlnAla : 217 !||||||||||||||| ! ! ! ! ! ! !!.!.!!! !|||!.! TyrPheProPheAspIleArgProIleGlyValLeuLeuSerThrAsnPheGlyGlnVal 31346 : TATTTTCCCTTCGATATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAAGTG : 31405 218 : LeuGlnCysPheGlyAlaGlyIleThrTyrThrAlaIleAspValPheCysGlyMetSer : 237 ||| !...!:!..!|||! !|||!:!||||||.!!:!:|||..!||| !!.!||| ! LeuAlaAlaTyrSerAlaValIleSerTyrThrThrValAspThrPheIleAlaMetLeu 31406 : CTCGCAGCGTATTCCGCTGTTATCAGTTACACCACCGTGGATACATTTATCGCGATGCTG : 31465 238 : ValLeuHisAsnCysGlyGlnLeuGluIleLeuAlaAspLysIleLysAspLeuValAsn : 257 :!!:!!|||! |||||||||!!!||||||||| !.!.|||:!!::! |||:!!:!! IleMetHisIleCysGlyGlnPheGluIleLeuArgGlnLysLeuArgArgLeuMetAsp 31466 : ATAATGCACATATGCGGACAATTTGAGATACTGAGACAGAAATTACGAAGGCTGATGGAT : 31525 258 : ProAsp<->GluProArgValPheGlnGluLeuLeuLysThrIleValLeu : 273 !!!: :!! !!||| ! ! .!.|||:!!! !||| !:!:|||||| AspGluLysLysThrArgSerValAspGluIleGlnLysGluLeuValLeu 31526 : GACGAGAAGAAGACCAGAAGCGTGGATGAGATTCAGAAGGAGCTGGTTTTG : 31578 vulgar: gi|861722530|gb|AKO90010.1| 117 273 . KQ414804.1 31113 31578 + 140 M 39 117 G 1 0 M 23 69 G 1 0 M 78 234 G 0 3 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 31114 31578 140 + . gene_id 1 ; sequence gi|861722530|gb|AKO90010.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 31114 31578 . + . KQ414804.1 exonerate:protein2genome:local exon 31114 31578 . + . insertions 3 ; deletions 2 KQ414804.1 exonerate:protein2genome:local similarity 31114 31578 140 + . alignment_id 1 ; Query gi|861722530|gb|AKO90010.1| ; Align 31114 118 117 ; Align 31231 158 69 ; Align 31300 182 234 ; Align 31537 260 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722530|gb|AKO90010.1| odorant receptor 46 [Microplitis mediator] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 195 -> 276 Target range: 44883 -> 45126 196 : GlnSerValPheProPheAspIleThrIleGlyTyrArgCysTrpIleIleArgIleVal : 215 !:::!! !||||||!:!|||! ! !:!!.!! !.!! ! .!!! ! !|||!.! ArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThrValIleAla 44884 : CGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACAGTGATTGCT : 44941 216 : GlnAlaLeuGlnCysPheGlyAlaGlyIleThrTyrThrAlaIleAspValPheCysGly : 235 ||| !:!! ..!||| !|||!.!! !||||||||||||:!!|||..!||| !! ! GlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThrPheIleVal 44942 : CAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACTTTCATTGTA : 45001 236 : MetSerValLeuHisAsnCysGlyGlnLeuGluIleLeuAlaAspLysIleLysAspLeu : 255 |||! !:!!|||||| !||||||||||||..!! !||| !:!!:!!.!! ! ||| MetLeuIleLeuHisValCysGlyGlnLeuSerAsnLeuArgAsnGluPheGlyLysLeu 45002 : ATGTTAATTCTGCACGTTTGTGGACAACTTTCGAATTTGAGAAACGAATTCGGTAAGCTT : 45061 256 : ValAsnProAspGluProArgValPheGlnGluLeuLeuLysThrIleValLeuArgHis : 275 ! !|||:!! !! !:!! !:!!||| !|||! !:!: ! !!.!.!. GlnAlaCysAspLysValThrLeuGlnAlaLysLeuGlyLysIleValGlnLysHisGlu 45062 : CAAGCATGCGATAAAGTAACATTACAGGCGAAGTTGGGGAAAATCGTGCAGAAACACGAA : 45121 276 : Tyr : 276 ||| Tyr 45122 : TAT : 45126 vulgar: gi|861722530|gb|AKO90010.1| 195 276 . KQ414804.1 44883 45126 + 105 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44884 45126 105 + . gene_id 2 ; sequence gi|861722530|gb|AKO90010.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44884 45126 . + . KQ414804.1 exonerate:protein2genome:local exon 44884 45126 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44884 45126 105 + . alignment_id 2 ; Query gi|861722530|gb|AKO90010.1| ; Align 44884 196 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722506|gb|AKO90004.1| odorant receptor 40 [Microplitis mediator] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 281 Query range: 5 -> 257 Target range: 30779 -> 31605 6 : SerGlnAspPheLysTyrAlaLeuAlaTrpAsnArgThrSerLeuLysIleValGlyLeu : 25 !!!..!! !!!.||| ||||||!.!||||||||| !!:!:!!:!!:!:||||||:!! ThrSerGlyLeuLysValAlaLeuGlyTrpAsnArgTrpAsnMetGluLeuValGlyIle 30780 : ACTTCAGGTTTGAAGGTAGCACTTGGATGGAACCGTTGGAACATGGAACTGGTTGGAATT : 30837 26 : TrpProGluAsp<-><->AspAspGlyIleIleThrLysSerLeuGlyTrpPheCysAla : 43 ||||||||| ..!||| ! ! !!!!.! ! !!.!! !.!.! ! ! TrpProGluProSerArgSerAspGlnArgTrpProAsnPheLysAlaLeuLeuPheIle 30838 : TGGCCAGAACCGAGCAGATCTGATCAACGATGGCCGAATTTCAAGGCTTTGCTGTTCATT : 30897 44 : CysLeuIleIleIleIleIleTyrLeuProGlnSerAlaSerValTyrValTyrTrpGly : 63 ! !:::||||||...... ! !|||||||||!.!!:!:!! ! !! |||||| PheValIleIlePhePheGlyThrGlyProGlnSerValAsnLeuLeuPheIleTrpGly 30898 : TTTGtgataatattttttggaaCCGGACCTCAGAGCGTGAATCTACTTTTCATATGGGGA : 30957 64 : AsnMetAspAlaValIleGluCysLeuSer<->ValAsnGlyProValPheIleThrIle : 82 :!!:!:! !|||! ||| !|||||| !.!||| !|||! !.!.! !.!!!!: AspLeuGlyLeuValThrGluAsnLeuSerThrAlaAsnIleProGlyIleAsnAlaMet 30958 : GACCTTGGATTGGTCACGGAAAATCTGTCCACGGCTAATATTCCCGGCATAAACGCCATG : 31017 83 : ValLysIleIleIlePheArgTyrTyrArgArg{V} >>>> Target Intron 1 > : 94 :!!|||:!:|||||| ! !!:!!:!!||| !{!} 67 bp MetLysLeuIleIleAlaTrpHisHisArgAsp{A}++ 31018 : ATGAAACTGATTATCGCCTGGCATCACAGAGAT{G}gt...................... : 31056 95 : >>> {al}LeuLysArgValIleAspThrMetAlaGluAspTrpSerSerSerArgSer : 111 {.!}.!!|||! !|||||| ! :!!.!. !!!:||||||!.!!!!||||||!!: ++{la}PheLysProValIleLysSerPheTyrAspAspTrpLysThrSerArgThr 31057 : ...ag{ct}tTCAAGCCCGTTATAAAATCCTTCTACGACGATTGGAAAACCTCAAGGACc : 31171 112 : AsnGluGluTyrAlaValMetLeuLysThrAlaLysIleSerArgAlaIleSerValThr : 131 ...|||||| ..!|||||||||! !||||||.!!:!!!:! !||||||:!! ! LysGluGluLysGluThrMetLeuLysArgAlaLysPheAlaLysGlnIleSerIleTrp 31172 : aaggaggagaaggagacCATGTTGAAGAGAGCCAAATTTGCGAAACAAATTTCCATCTGG : 31231 132 : SerThrIleIleThrAsnSerLeuPheValAlaTyrIlePhePheLysIleTrpGluGly : 151 !!!:!!:!!:!!||| !!!:!! !!..!!.!|||:!! !.!!::! ||| ! CysSerValLeuThrLeuThrMetValThrValTyrLeuSerLeuArgAlaTrpIleIle 31232 : TGCTCAGTATTAACCTTGACCATGGTCACTGTTTATCTAAGTCTTCGAGCGTGGATCATC : 31291 152 : LeuGluMetSerLysArgThrAspLeuAspProArgLeuSerValGlyLeuLeuHisPro : 171 ! !:!!:!:..!!:! !!.!.!. !.!. !|||||| ||||||:!!||| TyrGlnLeuAspArgAlaAsnGlnLysGlnAspArgLeu---------LeuLeuTyrPro 31292 : TACCAGCTTGATAGGGCAAACCAGAAACAGGATCGTCTG---------CTCCTGTACCCT : 31342 172 : AlaTyrPheProTyrAspThrLysLysIleLysPhePheValProThrTrpIleAlaGln : 191 !.!|||||||||!:!|||! !::: !||| ! ! .!.:!! !!||| .!!!.!||| GlyTyrPheProPheAspIleArgProIleGlyValLeuLeuSerThrAsnPheGlyGln 31343 : GGCTATTTTCCCTTCGATATTCGTCCAATAGGGGTACTACTGTCGACCAATTTTGGCCAA : 31402 192 : LeuValAlaThrLeuPheSerMetThrAlaTyrAlaValPheAspThrPheValSerCys : 211 :!!:!!|||.!!! !! !:!!:!:! !::!|||.!!..! ! |||||||||:!!:!! ValLeuAlaAlaTyrSerAlaValIleSerTyrThrThrValAspThrPheIleAlaMet 31403 : GTGCTCGCAGCGTATTCCGCTGTTATCAGTTACACCACCGTGGATACATTTATCGCGATG : 31462 212 : MetValLeuHisIleCysGlyGlnLeuAlaValValGlyIleSerLeuGlnAsnLeuIle : 231 :!!:!!:!!|||||||||||||||!!!! !:!!:!! !! !.!|||!:!!..|||!!: LeuIleMetHisIleCysGlyGlnPheGluIleLeuArgGlnLysLeuArgArgLeuMet 31463 : CTGATAATGCACATATGCGGACAATTTGAGATACTGAGACAGAAATTACGAAGGCTGATG : 31522 232 : AsnGluAspThrAsnSer<->AspProAsnTyrPheTrpSerLysPheSerLysThrVal : 250 :!!!!:!!:! !!!.!!! ..! !:!! ! .!! !!.!:!!.!. ! !! !:!! AspAspGluLysLysThrArgSerValAspGluIleGlnLysGluLeuValLeuIleIle 31523 : GATGACGAGAAGAAGACCAGAAGCGTGGATGAGATTCAGAAGGAGCTGGTTTTGATCATA : 31582 251 : GluArgHisGluLysLeuAsn : 257 |||||||||||| ! |||||| GluArgHisGluHisLeuAsn 31583 : GAGAGGCATGAGCATCTAAAT : 31605 vulgar: gi|861722506|gb|AKO90004.1| 5 257 . KQ414804.1 30779 31605 + 281 M 24 72 G 0 6 M 44 132 G 0 3 M 20 60 S 0 1 5 0 2 I 0 63 3 0 2 S 1 2 M 70 210 G 3 0 M 70 210 G 0 3 M 20 60 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 30780 31605 281 + . gene_id 1 ; sequence gi|861722506|gb|AKO90004.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 30780 31053 . + . KQ414804.1 exonerate:protein2genome:local exon 30780 31053 . + . insertions 9 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 31054 31055 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 31054 31120 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 31119 31120 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 31121 31605 . + . KQ414804.1 exonerate:protein2genome:local exon 31121 31605 . + . insertions 3 ; deletions 3 KQ414804.1 exonerate:protein2genome:local similarity 30780 31605 281 + . alignment_id 1 ; Query gi|861722506|gb|AKO90004.1| ; Align 30780 6 72 ; Align 30858 30 132 ; Align 30993 74 60 ; Align 31123 95 210 ; Align 31333 168 210 ; Align 31546 238 60 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722506|gb|AKO90004.1| odorant receptor 40 [Microplitis mediator] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 275 Query range: 257 -> 400 Target range: 33631 -> 34668 258 : GluLeuAlaAsnValIleGluAspSerPheSerSerIleLeuLeuProGlnMetIleIle : 277 ..!!!!|||!.!:!!|||||||||!!!|||!:!!!!:!:|||||| !||||||:!::!! ArgPheAlaThrMetIleGluAspCysPheAsnThrLeuLeuLeuIleGlnMetLeuLeu 33632 : aGGTTCGCAACTATGATCGAGGATTGTTTCAACACATTGCTATTAATTCAGATGCTGCTC : 33689 278 : CysThrValThrPheCysPheGlnGlyPheAlaMetIleThr >>>> Target Intr : 292 ||||||||| !.!.||||||||||||||| !.!..!! ! 74 bp CysThrValGluIleCysPheGlnGlyPheLeuPhePheAsp++ 33690 : TGTACCGTCGAAATATGCTTTCAAGGCTTTTTATTCTTCGATgt................ : 33736 293 : on 1 >>>> SerPheIleAspProLeuAlaGlyLysValSerIleLeuGluMetLeuP : 308 !.!.:!!!!: ! ! !|||! ! !!!:!:!: :!!:!!|||| ++ValIleLeuGluAsnGluLysGlyIlePheAsnVal---GlnLeuLeuP 33737 : .........agGTGATACTAGAAAACGAGAAAGGAATATTCAACGTG---CAATTGCTTT : 33853 309 : heSerIleValTyrValPheTyrThrValLeuHisLeuPheValTyrCysTyrValGlyA : 328 ||! !:!::!!!:!|||! !!:!! !:!!:!!|||:!!!:!:!!|||||||||:!!|||! hePheValLeuPheValCysPheIleLeuValHisIleTyrIleTyrCysTyrIleGlyG 33854 : TCTTCGTGCTGTTCGTATGCTTCATCCTTGTACACATCTACATTTATTGTTACATAGGAG : 33913 329 : spTyrLeuSerPheGlu >>>> Target Intron 2 >>>> SerSerIleIleGl : 338 !: ||| ! .!. 454 bp |||!!! !!!:.! luMetLeuLeuThrHis+- ++SerArgGluMetSe 33914 : AGATGCTACTCACACATgc.........................agAGCAGAGAAATGAG : 34397 339 : yGlnSerTyrTyrLysSerGluTrpTyrLysLeuSerGlnAspLysSerArgSerLeuMe : 358 !.!.||| !|||:!!|||.!.||||||!!.:!!|||! :!!:!!!:!!!!|||:! rAsnSerAlaTyrGluSerAsnTrpTyrAsnValSerProProGluAlaLysCysLeuLe 34398 : CAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCACCTCCAGAAGCCAAGTGCCTTTT : 34457 359 : tPheIleGlyHisArgAlaArgArgProLeuLysIleThrAlaGlyLysPheCysAlaPh : 378 :|||||| !||||||.!! !||||||||| :!:||||||||||||||| !!.!!|| uPheIleMetHisArgThrAlaArgProLeuCysLeuThrAlaGlyLysPheSerThrPh 34458 : ATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTGACTGCAGGAAAATTCAGTACCTT : 34517 379 : eSerArgAsnLeuPheIleArg >>>> Target Intron 3 >>>> IleLeuLys : 388 ||||! !.!.:!!|||! !! ! 83 bp ||||||||| eSerMetGluMetPheSerThr++ ++IleLeuLys 34518 : CTCCATGGAAATGTTCAGTACTgt.........................agattcTGAAA : 34630 389 : ThrSerPheGlyTyrLeuSerMetLeuLeuAlaVal : 400 |||:!!.!.||||||||||||:!:||||||.!!||| ThrAlaMetGlyTyrLeuSerValLeuLeuThrVal 34631 : ACAGCAATGGGATATCTTTCAGTTCTCCTCACAGTT : 34668 vulgar: gi|861722506|gb|AKO90004.1| 257 400 . KQ414804.1 33631 34668 + 275 M 34 102 5 0 2 I 0 70 3 0 2 M 12 36 G 1 0 M 29 87 5 0 2 I 0 450 3 0 2 M 52 156 5 0 2 I 0 79 3 0 2 M 15 45 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 33632 34668 275 + . gene_id 2 ; sequence gi|861722506|gb|AKO90004.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 33632 33733 . + . KQ414804.1 exonerate:protein2genome:local exon 33632 33733 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 33734 33735 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 33734 33807 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 33806 33807 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 33808 33930 . + . KQ414804.1 exonerate:protein2genome:local exon 33808 33930 . + . insertions 0 ; deletions 1 KQ414804.1 exonerate:protein2genome:local splice5 33931 33932 . + . intron_id 2 ; splice_site "GC" KQ414804.1 exonerate:protein2genome:local intron 33931 34384 . + . intron_id 2 KQ414804.1 exonerate:protein2genome:local splice3 34383 34384 . + . intron_id 1 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 34385 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34385 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 3 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 3 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 2 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34668 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34668 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 33632 34668 275 + . alignment_id 2 ; Query gi|861722506|gb|AKO90004.1| ; Align 33632 258 102 ; Align 33808 292 36 ; Align 33844 305 87 ; Align 34385 334 156 ; Align 34624 386 45 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722506|gb|AKO90004.1| odorant receptor 40 [Microplitis mediator] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 205 Query range: 166 -> 263 Target range: 36761 -> 37052 167 : GlyLeuLeuHisProAlaTyrPheProTyrAspThrLysLysIleLysPhePheValPro : 186 ||||||||| !|||||| |||||||||||||||!!.|||! ! !!:!! ! ! GlyLeuLeuIleProAlaThrPheProTyrAspThrAsnLysSerProAsnTyrGluIle 36762 : GGACTACTTATCCCGGCCACATTTCCATACGACACGAATAAAAGTCCTAATTACGAAATT : 36819 187 : ThrTrpIleAlaGlnLeuValAlaThrLeuPheSerMetThrAlaTyrAlaValPheAsp : 206 ||||||:!!!.!|||!!!|||!.!|||:!!!!.||| !! !..!|||:!! !|||||| ThrTrpLeuGlyGlnPheValGlyThrValLeuSerAlaIleCysTyrSerCysPheAsp 36820 : ACTTGGCTTGGACAATTTGTGGGGACAGTGTTGAGCGCGATATGTTATTCCTGCTTCGAT : 36879 207 : ThrPheValSerCysMetValLeuHisIleCysGlyGlnLeuAlaValValGlyIleSer : 226 |||||||||:!! !:!:||||||||||||||||||||||||.!!|||:!! !!|||:!! ThrPheValAlaValLeuValLeuHisIleCysGlyGlnLeuThrValLeuArgIleAla 36880 : ACGTTCGTCGCTGTTCTCGTGTTACACATATGCGGCCAATTAACTGTTCTCCGCATTGCC : 36939 227 : LeuGlnAsnLeuIleAsnGluAspThrAsnSerAspProAsnTyrPheTrpSerLysPhe : 246 |||:!!|||||| !||| ! ! !!!...!:!! !!:! ! ||| ..!::!!!. LeuGluAsnLeuAlaAsnThrThrIleLysAspAsnTyrSerLysPheGlnGluArgLeu 36940 : CTCGAGAATCTTGCTAACACGACAATAAAAGACAACTACAGCAAGTTCCAAGAACGATTA : 36999 247 : SerLysThrValGluArgHisGluLysLeuAsnGluLeuAlaAsnValIle : 263 .!! ! ! !|||.!.|||!!..!.:!!||| !..!! ! |||...||| GlyTyrIleValHisArgGlnAsnGlnLeuPheArg***MetAsnThrIle 37000 : GGATACATTGTGCACAGGCAGAATCAATTGTTCAGGTGAATgaatacgatt : 37052 vulgar: gi|861722506|gb|AKO90004.1| 166 263 . KQ414804.1 36761 37052 + 205 M 97 291 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36762 37052 205 + . gene_id 3 ; sequence gi|861722506|gb|AKO90004.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36762 37052 . + . KQ414804.1 exonerate:protein2genome:local exon 36762 37052 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36762 37052 205 + . alignment_id 3 ; Query gi|861722506|gb|AKO90004.1| ; Align 36762 167 291 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722506|gb|AKO90004.1| odorant receptor 40 [Microplitis mediator] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 203 Query range: 293 -> 386 Target range: 51711 -> 52050 294 : IleAspProLeuAlaGlyLysValSerIleLeuGluMetLeuPheSerIleValTyrVal : 313 |||||| ! ! !! !:!! !! |||...::::::||||||! !:!: !!|||||| IleAspGluGluIleAspGluAsnMetIlePheGlnIleLeuPheLeuLeuPheTyrVal 51712 : ATTGACGAGGAAATAGATGAAAACAtgattttccaaattctctTTTTGCTGTTCTACGTG : 51769 314 : PheTyrThrValLeuHisLeuPheValTyrCysTyrValGlyAspTyrLeuSerPheGlu : 333 !!|||..!:!!|||!!.||||||:!!|||||||||||||||!!: |||||| !!||| ValTyrValMetLeuGlnLeuPheLeuTyrCysTyrValGlyGluArgLeuSerValGlu 51770 : GTTTACGTGATGCTACAATTATTCTTGTATTGTTACGTGGGTGAAAGGCTTTCCGTTGAG : 51829 334 : >>>> Target Intron 1 >>>> SerSerIleIleGlyGlnSerTyrTyrLysS : 344 60 bp ||| ! !|||!.!.!.:!! ||| ! | ++ ++SerValGluIleAlaAsnAlaAlaTyrAspS 51830 : gt.........................agAGCGTTGAAATAGCTAACGCGGCATACGATT : 51922 345 : erGluTrpTyrLysLeuSerGlnAspLysSerArgSerLeuMetPheIleGlyHisArgA : 364 |||||||||||!!.||||||! ! ! !!.:!!!:!! !|||:!:.!!||| !!..|||| erGluTrpTyrAsnLeuSerProLysAsnAlaLysLeuLeuLeuIleIleMetArgArgA 51923 : CTGAATGGTACAATTTGTCTCCGAAAAATGCAAAGTTGCTACTAATTATCATGCGACGAG : 51982 365 : laArgArgProLeuLysIleThrAlaGlyLysPheCysAlaPheSerArgAsnLeuPheI : 384 ||||| !||||||:!!||||||||||||!:!|||..!.!!|||!!!! !! |||!:! laArgLeuProLeuGlnIleThrAlaGlyArgPheAlaThrPheThrLeuMetLeuTyrS 51983 : CCAGGTTACCTCTACAAATCACTGCAGGTAGATTTGCTACTTTCACTCTGATGCTGTATT : 52042 385 : leArgIle : 386 !!:!:!: erGlnVal 52043 : CACAGGTa : 52050 vulgar: gi|861722506|gb|AKO90004.1| 293 386 . KQ414804.1 51711 52050 + 203 M 40 120 5 0 2 I 0 56 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 51712 52050 203 + . gene_id 4 ; sequence gi|861722506|gb|AKO90004.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 51712 51831 . + . KQ414804.1 exonerate:protein2genome:local exon 51712 51831 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 51832 51833 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 51832 51891 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 51890 51891 . + . intron_id 0 ; splice_site "aG" KQ414804.1 exonerate:protein2genome:local cds 51892 52050 . + . KQ414804.1 exonerate:protein2genome:local exon 51892 52050 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 51712 52050 203 + . alignment_id 4 ; Query gi|861722506|gb|AKO90004.1| ; Align 51712 294 120 ; Align 51892 334 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722506|gb|AKO90004.1| odorant receptor 40 [Microplitis mediator] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 131 Query range: 167 -> 221 Target range: 44874 -> 45036 168 : LeuLeuHisProAlaTyrPheProTyrAspThrLysLysIleLysPhePheValProThr : 187 |||||| !! !||||||||||||||||||!:! ! ! ! ! !!:!! ! !||| LeuLeuPheArgAlaTyrPheProTyrAspSerAspValSerProAsnTyrGluPheThr 44875 : CTACTCTTCCGTGCTTATTTCCCTTACGACAGCGATGTCAGTCCAAATTACGAATTTACA : 44932 188 : TrpIleAlaGlnLeuValAlaThrLeuPheSerMetThrAlaTyrAlaValPheAspThr : 207 !|||||||||:!!:!!|||.!!!!!!:!:!! |||.!!|||.!!!.! !!|||||| ValIleAlaGlnIleIleAlaAlaPheTyrAlaAlaThrThrTyrThrAlaValAspThr 44933 : GTGATTGCTCAAATCATAGCTGCTTTTTATGCAGCCACCACATACACAGCCGTCGATACT : 44992 208 : PheValSerCysMetValLeuHisIleCysGlyGlnLeuAla : 221 |||:!! ! :!::!!||||||:!!||||||||||||:!! PheIleValMetLeuIleLeuHisValCysGlyGlnLeuSer 44993 : TTCATTGTAATGTTAATTCTGCACGTTTGTGGACAACTTTCG : 45036 vulgar: gi|861722506|gb|AKO90004.1| 167 221 . KQ414804.1 44874 45036 + 131 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 44875 45036 131 + . gene_id 5 ; sequence gi|861722506|gb|AKO90004.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 44875 45036 . + . KQ414804.1 exonerate:protein2genome:local exon 44875 45036 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 44875 45036 131 + . alignment_id 5 ; Query gi|861722506|gb|AKO90004.1| ; Align 44875 168 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722506|gb|AKO90004.1| odorant receptor 40 [Microplitis mediator] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 324 -> 383 Target range: 39938 -> 40115 325 : TyrValGlyAspTyrLeuSerPheGluSerSerIleIleGlyGlnSerTyrTyrLysSer : 344 |||::: :::||| |||!!! !|||||||||||| ||| ! !!! TyrIleCysLysIleCysAsnPhe***SerThrGlyIleGlyGlnSerAlaTyrAspCys 39939 : tacatttgcaaaatttgcaatttttagagTACTGGAATTGGCCAATCTGCATACGACTGT : 39996 345 : GluTrpTyrLysLeuSerGlnAspLysSerArgSerLeuMetPheIleGlyHisArgAla : 364 .!.|||||| ! ||| !!! ! ! ! :!! !||||||:!:.!!:!: ! !|||||| AsnTrpTyrAspLeuProProLysHisAlaValSerLeuValIleValIleCysArgAla 39997 : AACTGGTACGATTTACCACCGAAGCATGCTGTTTCGTTAGTTATCGTGATATGTCGCGCG : 40056 365 : ArgArgProLeuLysIleThrAlaGlyLysPheCysAlaPheSerArgAsnLeuPhe : 383 !:! ! !!!!!:!!|||||||||||||||||| !! !!||||||! !.!.|||||| GlnValSerPheGlnIleThrAlaGlyLysPheSerProPheSerLeuGluLeuPhe 40057 : CAAGTGTCCTTTCAAATAACCGCTGGAAAATTCAGTCCCTTTTCTCTCGAGCTGTTT : 40115 vulgar: gi|861722506|gb|AKO90004.1| 324 383 . KQ414804.1 39938 40115 + 103 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39939 40115 103 + . gene_id 6 ; sequence gi|861722506|gb|AKO90004.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 39939 40115 . + . KQ414804.1 exonerate:protein2genome:local exon 39939 40115 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39939 40115 103 + . alignment_id 6 ; Query gi|861722506|gb|AKO90004.1| ; Align 39939 325 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722506|gb|AKO90004.1| odorant receptor 40 [Microplitis mediator] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 83 -> 153 Target range: 36527 -> 36737 84 : LysIleIleIlePheArgTyrTyrArgArgValLeuLysArgValIleAspThrMetAla : 103 |||:::|||... ::: !! !!.!||| ! !:!!!!:..! !!!: ! LysLeuIlePheThrIleHisThrSerLeuAlaLeuValPheLeuMetSerGlnIlePhe 36528 : AAACtgattttcacaattcacACGTCTCTAGCGCTAGTATTCTTAATGAGCCAAATATTC : 36585 104 : GluAspTrpSerSerSerArgSerAsnGluGluTyrAlaValMetLeuLysThrAlaLys : 123 !!:||||||:!!..! !!! ! !!.!.! !!!: ! !..!|||||||||||||||||| AspAspTrpAlaGluProIleProGluValAspArgHisThrMetLeuLysThrAlaLys 36586 : GACGACTGGGCGGAACCAATCCCGGAGGTGGATCGCCACACGATGCTGAAGACCGCGAAA : 36645 124 : IleSerArgAlaIleSerValThrSerThrIleIleThrAsnSerLeuPheValAlaTyr : 143 ||||||||| !||||||:!!..!!!!:!!|||:!:||| !! !:!! !!:!!|||!:! IleSerArgMetIleSerIleValCysSerIleLeuThrTyrValMetValLeuAlaPhe 36646 : ATTAGTCGAATGATATCCATAGTCTGTTCTATCCTGACGTATGTCATGGTTTTGGCCTTC : 36705 144 : IlePhePheLysIleTrpGluGlyLeuGlu : 153 :!:! .!!:!!||||||....!!:!!:!! LeuSerLeuGlnIleTrpSerSerMetGln 36706 : TTGTCACTTCAAATTTGGAGCAGCATGCAA : 36737 vulgar: gi|861722506|gb|AKO90004.1| 83 153 . KQ414804.1 36527 36737 + 100 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 36528 36737 100 + . gene_id 7 ; sequence gi|861722506|gb|AKO90004.1| ; gene_orientation . KQ414804.1 exonerate:protein2genome:local cds 36528 36737 . + . KQ414804.1 exonerate:protein2genome:local exon 36528 36737 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 36528 36737 100 + . alignment_id 7 ; Query gi|861722506|gb|AKO90004.1| ; Align 36528 84 210 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 152 Query range: 143 -> 215 Target range: 485716 -> 485932 144 : SerProLeuLeuAspIleIleIleProLeuAsnGluThrArgGluArgIleLeuProT : 163 !:! !:!!|||||||||:!:|||||||||||| ! |||||| !|||! :!!||| AsnSerIleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProI 485717 : AACAGTATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTA : 485774 164 : yrProAlaGluTyrPheIleAspIleGlnLysAsnPhePheMetLeuTyrProHisGl : 182 !:!!|||:!!|||:!!||| |||||| !!|||!:! :!! !!|||! leAsnSerGluHisPheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisVa 485775 : TAAACTCGGAACATTTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGT : 485831 183 : yAlaIleValThrProIleAlaLeuThrValLeuValGlyPheAspSerLeuTyrAla : 201 !!.!:!! !!..! !|||!.! !! !||||||:!!.!! ::: ||| lValLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMet 485832 : TGTTCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatg : 485888 202 : GlyPheValGlnHisAlaCysSerMetPheThrIleIleGly : 215 ..!.!.:!!||||||.!!|||.!!:!!!:!||||||:!!||| AlaIleIleGlnHisThrCysGlyLeuTyrThrIleValGly 485889 : gCGATAATACAGCACACCTGTGGTTTGTATACAATCGTTGGG : 485932 vulgar: gi|861722527|gb|AKO90009.1| 143 215 . KQ414815.1 485716 485932 + 152 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485717 485932 152 + . gene_id 1 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485717 485932 . + . KQ414815.1 exonerate:protein2genome:local exon 485717 485932 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 485717 485932 152 + . alignment_id 1 ; Query gi|861722527|gb|AKO90009.1| ; Align 485717 144 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 144 Query range: 135 -> 214 Target range: 482001 -> 482238 136 : ValTyrIleValLeuProLeuMetSerProLeuLeuAspIleIleIleProLeuAsnG : 155 :!! |||:!!! !! !:!! !||| !:!!||||||:!!|||:!!|||||||||| IleLeuIleLeuCysHisMetSerSerPheValLeuAspValIleValProLeuAsnG 482002 : ATACTGATACTGTGCCATATGTCGAGTTTCGTTCTAGACGTCATTGTTCCTCTAAACG : 482059 156 : luThrArgGluArgIleLeuProTyrProAlaGluTyrPheIleAspIleGlnLysAs : 174 |||||||| !!.! !!!!||| !! !||||||||||||||| |||||| ! luThrArgThrHisGlnPheProValSerMetGluTyrPheIleAspGlnGlnLysTy 482060 : AGACTCGTACGCACCAATTTCCAGTATCAATGGAGTACTTCATTGACCAGCAGAAATA : 482116 175 : nPhePheMetLeuTyrProHisGlyAlaIleValThrProIleAlaLeuThrValLeu : 193 !! .!!.!.:!! !||| ! !.!! ! !! !:!!!.! !|||:!!:!! rSerLeuPheIleThrPheHisGlnTrpPheSerPheLeuValValAlaThrIleIle 482117 : TTCACTTTTCATTACGTTTCATCAGTGGTTTTCCTTTCTCGTAGTCGCAACGATCATT : 482173 194 : ValGlyPheAspSerLeuTyrAlaGlyPheValGlnHisAlaCysSerMetPheThrI : 213 ||||||.!.!!:!!!||| !!.! !!:::!!:!!||||||...|||:!!||||||: ValGlyIleGluThrLeuIleValMetTrpLeuGluHisAlaAlaSerLeuPheThrL 482174 : GTCGGGATAGAGACTTTGATTGTTATGTGGCTTGAACACGCTGCAAGCTTGTTCACCC : 482233 214 : leIle : 214 !!:!! euVal 482234 : TTGTA : 482238 vulgar: gi|861722527|gb|AKO90009.1| 135 214 . KQ414815.1 482001 482238 + 144 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 482002 482238 144 + . gene_id 2 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 482002 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 482002 482238 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 482002 482238 144 + . alignment_id 2 ; Query gi|861722527|gb|AKO90009.1| ; Align 482002 136 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 131 -> 213 Target range: 457165 -> 457411 132 : CysValAlaThrValTyrIleValLeuProLeuMetSerProLeuLeuAspIleIleI : 151 |||! !||| !||| !! !..!|||! !|||.!. !! !||||||||||||:!:: CysGlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspIleValV 457166 : TGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGG : 457223 152 : leProLeuAsnGluThrArgGluArgIleLeuProTyrProAlaGluTyrPheIleAs : 170 !!||||||||||||:!!||| !! ||| ! ! !!||||||||||||:!!|| alProLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAs 457224 : TCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGA : 457280 171 : pIleGlnLysAsnPhePheMetLeuTyrProHisGlyAlaIleValThrProIleAla : 189 |!!::!!||| !!.!. ! :!! ! !!||| ! !! ! !! !|||||| pMetLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAla 457281 : CATGAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCG : 457337 190 : LeuThrValLeuValGlyPheAspSerLeuTyrAlaGlyPheValGlnHisAlaCysS : 209 !|||..!|||..!!.! !!!:|||||| ! ! ! !|||! !|||!.!|||. AlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuHisValCysG 457338 : GCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTG : 457397 210 : erMetPheThrIle : 213 !!:!!|||! !:!! lyLeuPheLysLeu 457398 : GATTGTTCAAGCTT : 457411 vulgar: gi|861722527|gb|AKO90009.1| 131 213 . KQ414815.1 457165 457411 + 133 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457166 457411 133 + . gene_id 3 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457166 457411 . + . KQ414815.1 exonerate:protein2genome:local exon 457166 457411 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457166 457411 133 + . alignment_id 3 ; Query gi|861722527|gb|AKO90009.1| ; Align 457166 132 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 137 -> 214 Target range: 475542 -> 475773 138 : IleValLeuProLeuMetSerProLeuLeuAspIleIleIleProLeuAsnGluThrA : 157 |||:!!|||! !!!! !||| !:!!|||||| !:!::!!||||||||||||:!!| IleLeuLeuLeuPheSerSerLysIleLeuAspSerLeuLeuProLeuAsnGluSerA 475543 : ATATTGCTTCTCTTCTCGTCTAAGATCCTTGATTCTTTGTTACCCCTGAACGAGTCTC : 475600 158 : rgGluArgIleLeuProTyrProAlaGluTyrPheIleAspIleGlnLysAsnPhePh : 176 || !!! ! !! ! ||||||||||||::: !|||||| !!|||!: rgProSerTrpSerLeuIleArgIleGluTyrPheIleAsnGluGlnLysTyrPheTy 475601 : GTCCTAGCTGGTCTCTGAtacgaatagaatatttcataaacGAACAGAAATACTTTTA : 475657 177 : eMetLeuTyrProHisGlyAlaIleValThrProIleAlaLeuThrValLeuValGly : 195 !:!! ! !:!! !.!!:!!..!! !! !:!: ! !|||..!! !|||!.! rLeuSerValIleTyrGlnThrValThrIleLeuLeuPheGlyThrThrTyrValAla 475658 : TCTGAGCGTGATCTATCAGACTGTAACGATCCTTCTGTTTGGTACCACGTACGTAGCA : 475714 196 : PheAspSerLeuTyrAlaGlyPheValGlnHisAlaCysSerMetPheThrIleIle : 214 !!!::!!:!!!:!.!! !!:::!!||||||..! |||:::||| |||::: ThrGluAlaIlePheThrMetTrpLeuGlnHisCysIleSerLeuPheGluIleVal 475715 : ACTGAAGCAATATTTACCATGTGGTTGCAACATTGCATaagtttatttgaaattgtt : 475773 vulgar: gi|861722527|gb|AKO90009.1| 137 214 . KQ414815.1 475542 475773 + 107 M 77 231 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 475543 475773 107 + . gene_id 4 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 475543 475773 . + . KQ414815.1 exonerate:protein2genome:local exon 475543 475773 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 475543 475773 107 + . alignment_id 4 ; Query gi|861722527|gb|AKO90009.1| ; Align 475543 138 231 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722503|gb|AKO90003.1| odorant receptor 39 [Microplitis mediator] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 124 Query range: 79 -> 168 Target range: 481974 -> 482238 80 : ThrGlyAlaLeuTyrGlyThrLeuAlaProLeuValLeuValProIleThrProLeuI : 99 |||..! !:!!||| !:!!:!! ! !|||:!!||| !! !!!::!! !!!!: ThrAlaLeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerPheV 481975 : acagcGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCG : 482032 100 : leLeuAspValIleAlaProMetAsnGluSerTyrProLysHisLeuMetPheGlnGl : 118 !!||||||||||||!.!|||:!:||||||!!! ! !! !|||! !.!. !.. alLeuAspValIleValProLeuAsnGluThr---ArgThrHisGlnPheProValSe 482033 : TTCTAGACGTCATTGTTCCTCTAAACGAGACT---CGTACGCACCAATTTCCAGTATC : 482086 119 : nIleGluPheLeuValAspAlaAspLysTyrPhePheProLeuPheIleHisAsnTyr : 137 !!!:|||!:!!!!:!!||| !.!.||||||! .!! !:!! .!!|||.!.!:: rMetGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrp 482087 : AATGGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGG : 482143 138 : MetGlyThrValAlaPheLeuThrIleIleIleAlaIleAspThrMetLeuMetValT : 157 .!...! !:!!!.! !! !|||||||||:!!!.!|||!!:|||:!!:!!:!::!!! PheSerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetT 482144 : TTTTCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGT : 482203 158 : yrIleGlnHisGlyCysAlaLysPheAlaIleLeu : 168 :::!!:!!|||!.!...::! !|||.!!:!!:!! rpLeuGluHisAlaAlaSerLeuPheThrLeuVal 482204 : GGCTTGAACACGCTGCAAGCTTGTTCACCCTTGTA : 482238 vulgar: gi|861722503|gb|AKO90003.1| 79 168 . KQ414815.1 481974 482238 + 124 M 30 90 G 1 0 M 58 174 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481975 482238 124 + . gene_id 1 ; sequence gi|861722503|gb|AKO90003.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481975 482238 . + . KQ414815.1 exonerate:protein2genome:local exon 481975 482238 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 481975 482238 124 + . alignment_id 1 ; Query gi|861722503|gb|AKO90003.1| ; Align 481975 80 90 ; Align 482065 111 174 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722503|gb|AKO90003.1| odorant receptor 39 [Microplitis mediator] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 89 -> 167 Target range: 464606 -> 464840 90 : LeuValLeuValProIleThrProLeuIleLeuAspValIleAlaProMetAsnGluS : 109 :!! !|||:!! !:!! !||| !||||||||||||:!!||||||:!:||||||| IleCysLeuLeuGluValLeuProAspIleLeuAspValValAlaProLeuAsnGluS 464607 : ATCTGTTTACTCGAAGTATTGCCAGATATTCTCGACGTGGTTGCGCCCCTCAATGAAT : 464664 110 : erTyrProLysHisLeuMetPheGlnGlnIleGluPheLeuValAspAlaAspLysTy : 128 || ! !! ! !!.! !:!:.!! ! ! |||:!!..!|||::!... ! ! erArgSerHisGlnTyrLeuIleThrAlaGluPhePheIleThrAspSerSerProAs 464665 : CTCGTTCTCATCAATACTTAATTACCGCGGAATTTTTCATCACTGATAGTTCGCCGAA : 464721 129 : rPhePheProLeuPheIleHisAsnTyrMetGlyThrValAlaPheLeuThrIleIle : 147 !!:!.!! ! !! !:!! !!.. !!!!: ! !:!! ! :!!|||! !||| nTyrIleValThrCysValGlyThrAspIleThrLeuIleMetGlyValThrThrIle 464722 : TTATATCGTAACTTGTGTTGGTACGGATATTACTCTTATCATGGGAGTCACGACAATA : 464778 148 : IleAlaIleAspThrMetLeuMetValTyrIleGlnHisGlyCysAlaLysPheAlaI : 167 |||||| !!!:|||.!. !.!.:!!! :!:|||||| !||||||! !||| !| IleAlaSerGluThrPheThrPheLeuLeuLeuGlnHisIleCysAlaMetPheLysI 464779 : ATTGCCTCCGAAACGTTCACTTTTTTGTTGCTGCAACATATCTGCGCAATGTTCAAAA : 464838 168 : le : 167 || le 464839 : TC : 464840 vulgar: gi|861722503|gb|AKO90003.1| 89 167 . KQ414815.1 464606 464840 + 106 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 464607 464840 106 + . gene_id 2 ; sequence gi|861722503|gb|AKO90003.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 464607 464840 . + . KQ414815.1 exonerate:protein2genome:local exon 464607 464840 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 464607 464840 106 + . alignment_id 2 ; Query gi|861722503|gb|AKO90003.1| ; Align 464607 90 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722503|gb|AKO90003.1| odorant receptor 39 [Microplitis mediator] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 86 -> 160 Target range: 471570 -> 471789 87 : LeuAlaProLeuValLeuValProIleThrProLeuIleLeuAspValIleAlaProM : 106 ||| ! !! !|||:!!:!! !!!!::!!|||||||||||||||:!!||| !|||: LeuIleThrSerValIleLeuSerMetSerProLeuIleLeuAspIleIleIleProL 471571 : CTCATTACTAGTGTAATACTGTCCATGTCGCCTCTTATTCTCGATATTATAATACCTC : 471628 107 : etAsnGluSerTyrProLysHisLeuMetPheGlnGlnIleGluPheLeuValAspAl : 125 !!||| !||| !|||::::!!!!! ||| !.!!!!:|||:!! !:!! euAsnThrSerArgProArgTyrPheProPhe---ThrPheAspPheIleProAsnGl 471629 : TGAACACGTCACGTCCACGTTACTTTCCATTT---ACGTTCGATTTCATTCCCAATCA : 471682 126 : aAspLysTyrPhePheProLeuPheIleHisAsnTyrMetGlyThrValAlaPheLeu : 144 !!!::!!||||||! |||:!! !||| !::! !!!: ! !:!!..! ||| nGluGluTyrPhe***ProIleThrIlePheSerGlyIleLeuCysIleCysGlyLeu 471683 : AGAGGAATACTTCTAACCGATTACTATCTTTTCTGGCATATTGTGCATTTGTGGATTA : 471739 145 : ThrIleIleIleAlaIleAspThrMetLeuMetValTyrIleGlnHis : 160 .!! !!!:|||::!! !!!: !:!!||||||:!! !!:!! !||| AlaAlaMetIleSerSerGluGlyLeuLeuMetMetAsnValLeuHis 471740 : GCAGCAATGATAAGTAGCGAGGGTCTGCTTATGATGAATGTTTTACAC : 471789 vulgar: gi|861722503|gb|AKO90003.1| 86 160 . KQ414815.1 471570 471789 + 101 M 30 90 G 1 0 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471571 471789 101 + . gene_id 3 ; sequence gi|861722503|gb|AKO90003.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471571 471789 . + . KQ414815.1 exonerate:protein2genome:local exon 471571 471789 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 471571 471789 101 + . alignment_id 3 ; Query gi|861722503|gb|AKO90003.1| ; Align 471571 87 90 ; Align 471661 118 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 177 Query range: 129 -> 215 Target range: 1243857 -> 1243599 130 : LeuIleCysValAlaThrValTyrIleValLeuProLeuMetSerProLeuLeuAs : 148 |||.!!! ! !!:!!! !:!!!:!:!!:!!!!!||||||!!: !!|||:!!||||| LeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProProIleLeuAs 1243857 : TTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCCAATATTGGA : 1243803 149 : pIleIleIleProLeuAsnGluThrArgGluArgIleLeuProTyrProAlaGluT : 167 |:!!:!! !||||||||||||||||||...|||||| :::| pValValSerProLeuAsnGluThrArgSerArgIleGluValIleLysLeuGlnT 1243802 : TGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataaaattgcaat : 1243746 168 : yrPheIleAspIleGlnLysAsnPhePheMetLeuTyrProHisGlyAlaIleVal : 185 ||.!..!!|||!:::::|||||||||::: |||||| !:!! !!.! ! yrLeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyrThrGlyTrpCys 1243745 : accTGTTCGACAtggagaagaatttttattcattatacGTCTACACTGGCTGGTGC : 1243692 186 : ThrProIleAlaLeuThrValLeuValGlyPheAspSerLeuTyrAlaGlyPheVa : 204 :!! !!!:.!!:!!! !|||:!!:!! !.!.|||:!!||||||!.!! !.!!:! SerPheMetThrMetMetValIleIleThrIleAspAlaLeuTyrValValIleIl 1243691 : TCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATATGTGGTAATCAT : 1243635 205 : lGlnHisAlaCysSerMetPheThrIleIleGly : 215 !!!.|||.!!|||.!!:!:|||.!!:!! !||| eHisHisThrCysGlyLeuPheAlaValCysGly 1243634 : TCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: gi|861722527|gb|AKO90009.1| 129 215 . KQ414851.1 1243857 1243599 - 177 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243857 177 - . gene_id 1 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243857 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243857 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243857 177 - . alignment_id 1 ; Query gi|861722527|gb|AKO90009.1| ; Align 1243858 130 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 137 Query range: 124 -> 215 Target range: 1224300 -> 1224024 125 : ValTyrPheSerGlyLeuIleCysValAlaThrValTyrIleValLeuProLeuMe : 143 :::::: .....!||| ||| ! !||||||!!: !!!!||||||!! IlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLeuIl 1224300 : attttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGAT : 1224246 144 : tSerProLeuLeuAspIleIleIleProLeuAsnGluThrArgGluArgIleLeuP : 162 :!:!|||:!!||||||:!!:!! |||||||||||||||||| |||! ||| eAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLeuL 1224245 : AAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTT : 1224189 163 : roTyrProAlaGluTyr<->PheIleAspIleGlnLysAsnPhePheMetLeuTyr : 179 ! !|||!.!...||| ||||||||| ! :!!:!!|||!:!! :!! !! euLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValAsn 1224188 : TGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAAT : 1224135 180 : ProHisGlyAlaIleValThrProIleAlaLeuThrValLeuValGlyPheAspSe : 198 !||| ! !! ! !..! ! !..! !! !:!!:!!:!!!.! ! |||! PheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAspMe 1224134 : TTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATAT : 1224078 199 : rLeuTyrAlaGlyPheValGlnHisAlaCysSerMetPheThrIleIleGly : 215 !|||||| ! !.!!:!! ||| !|||.!!:!!|||.!!:!: !||| tLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaValCysGly 1224077 : GTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: gi|861722527|gb|AKO90009.1| 124 215 . KQ414851.1 1224300 1224024 - 137 M 43 129 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224300 137 - . gene_id 2 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224300 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224300 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224300 137 - . alignment_id 2 ; Query gi|861722527|gb|AKO90009.1| ; Align 1224301 125 129 ; Align 1224169 168 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 134 Query range: 129 -> 215 Target range: 1234320 -> 1234059 130 : LeuIleCysValAlaThrValTyrIleValLeuProLeuMetSerProLeuLeuAs : 148 |||:!:! ! !! !..!|||!:!:!::!!:!!||||||:!:! !|||!!!||||| LeuLeuSerPheMetValValPheLeuLeuValProLeuValPheProPheLeuAs 1234320 : TTACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGA : 1234266 149 : pIleIleIleProLeuAsnGluThrArgGluArgIleLeuProTyrProAlaGluT : 167 |:!!:!!:!!|||||||||||||||||| !||| ! ! !!:! !!.!.!.| pValValLeuProLeuAsnGluThrArgProArgGlnGlnGlyPheArgValAsnT 1234265 : TGTCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACT : 1234209 168 : yr<->PheIleAspIleGlnLysAsnPhePheMetLeuTyrProHisGlyAlaIle : 184 || !:!.!!||| ! ! ! !!||||||! :!!||| !!!. !||| yrLeuTyrPheAspGluAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrp 1234208 : ATCTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGG : 1234155 185 : ValThrProIleAlaLeuThrValLeuValGlyPheAspSerLeuTyrAlaGlyPh : 203 ! !.!! !:!!!.!:!!! !:!!:!!:!! ! ! |||||||||||| ! !.! GlyAlaValValValValMetIleIleIleThrValAspSerLeuTyrMetIleIl 1234154 : GGTGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGATAAT : 1234098 204 : eValGlnHisAlaCysSerMetPheThrIleIleGly : 215 .:!!!!.|||||| !!.!!||||||.!!:!: !||| eIleHisHisAlaSerGlyMetPheAlaValCysGly 1234097 : AATTCACCATGCCAGCGGAATGTTCGCCGTGTGCGGG : 1234060 vulgar: gi|861722527|gb|AKO90009.1| 129 215 . KQ414851.1 1234320 1234059 - 134 M 38 114 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234060 1234320 134 - . gene_id 3 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1234060 1234320 . - . KQ414851.1 exonerate:protein2genome:local exon 1234060 1234320 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234060 1234320 134 - . alignment_id 3 ; Query gi|861722527|gb|AKO90009.1| ; Align 1234321 130 114 ; Align 1234204 168 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 126 -> 215 Target range: 1229494 -> 1229224 127 : PheSerGlyLeuIleCysValAlaThrValTyrIleValLeuProLeuMetSerPr : 145 !!...!!.!|||:!!! !!.! ! !|||!:!:!::!!:!!||||||.!..!!|| LeuAspAlaLeuLeuPheAlaMetCysValPheLeuLeuValProLeuPheGlyPr 1229494 : TTAGATGCTTTACTCTTCGCAATGTGTGTTTTCTTGCTGGTCCCATTGTTTGGTCC : 1229440 146 : oLeuLeuAspIleIleIleProLeuAsnGluThrArgGluArgIleLeuProTyrP : 164 | !|||||||||:!!:!!|||! !|||||||||||| !||| !! !! !!:! oAlaLeuAspIleValLeuProSerAsnGluThrArgProArgGlnGlnLeuPheA 1229439 : AGCCCTGGACATCGTCCTTCCATCAAATGAAACTAGGCCACGGCAACAACTGTTCA : 1229383 165 : roAlaGluTyrPheIle<->AspIleGlnLysAsnPhePheMetLeuTyrProHis : 181 !!.!.!.|||.!.||| ||| ! ! ! !!|||||| :!!||| !!!. rgValAsnTyrIleIlePheAspGlnAlaAspTyrPhePheTyrValTyrIleGln 1229382 : GAGTTAACTATATAATTTTCGACCAAGCAGACTATTTTTTCTACGTGTATATTCAA : 1229329 182 : GlyAlaIleValThrProIleAlaLeuThrValLeuValGlyPheAspSerLeuTy : 200 ! ! !||| !:!! !:!!! !!.!:!!:!! ! ! ||||||||||| LeuPheTrpCysThrIleValLeuValMetAlaIleIleThrValAspSerLeuTy 1229328 : TTGTTTTGGTGTACAATCGTTCTTGTAATGGCCATTATCACCGTAGATTCATTGTA : 1229272 201 : rAlaGlyPheValGlnHisAlaCysSerMetPheThrIleIleGly : 215 | ! !.!.:!! ! |||||| !!.!!||||||.!!||| !||| rMetIleIleIleTyrHisAlaSerGlyMetPheAlaIleCysGly 1229271 : CATGATCATAATTTACCATGCCAGCGGAATGTTCGCTATATGCGGG : 1229225 vulgar: gi|861722527|gb|AKO90009.1| 126 215 . KQ414851.1 1229494 1229224 - 125 M 43 129 G 0 3 M 46 138 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229225 1229494 125 - . gene_id 4 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229225 1229494 . - . KQ414851.1 exonerate:protein2genome:local exon 1229225 1229494 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229225 1229494 125 - . alignment_id 4 ; Query gi|861722527|gb|AKO90009.1| ; Align 1229495 127 129 ; Align 1229363 170 138 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 129 -> 215 Target range: 1240082 -> 1239821 130 : LeuIleCysValAlaThrValTyrIleValLeuProLeuMetSerProLeuLeuAs : 148 |||.!!! ||| :::::::::|||:!!|||:::... ||||||||||| LeuPheSerValLeuPheIlePheLeuValValProIlePheProProLeuLeuAs 1240082 : TTATTTTCcgttttgttcatttttctggTGGTTCcgatttttcctcctcttctggA : 1240028 149 : pIleIleIleProLeuAsnGluThrArgGluArgIleLeuProTyrProAlaGluT : 167 ||||:!!! !||||||||||||||||||! !||| ::: ......| pIleLeuLysProLeuAsnGluThrArgAlaArgGlnLysIlePheLysValAsnT 1240027 : CATTTTAAAACCTTTAAACGAAACCCGAGCACgccagaaaatattcaaagttaaTT : 1239971 168 : yr<->PheIleAspIleGlnLysAsnPhePheMetLeuTyrProHisGlyAlaIle : 184 || .!!||||||! .!.:!!.!. !.!.!!: !||| !||| !:!! yrLeuIleIleAspArgAspGluGlnAlaLeuIleThrTyrPheHisLeuSerTrp 1239970 : ACCTGATCATTGACAGGGATGAACAAGCTCTGATCACATATTTTCACTTGTCTTGG : 1239917 185 : ValThrProIleAlaLeuThrValLeuValGlyPheAspSerLeuTyrAlaGlyPh : 203 ..!||| !! ! ! !! ! !:!!:!!.!!! !!:! !:!!|||!.! !.! ThrThrIleThrLeuGlyIleSerValLeuSerSerGluLeuIleTyrValLeuLe 1239916 : ACAACTATCACTCTTGGGATATCTGTGCTTAGCTCAGAATTGATATACGTCCTTCT : 1239860 204 : eValGlnHisAlaCysSerMetPheThrIleIleGly : 215 !:!!!!.|||.!! !!.!!:!!|||.!!:!: !||| uIleHisHisThrSerGlyLeuPheAlaValAlaGly 1239859 : TATTCATCATACCAGCGGTCTGTTTGCTGTGGCTGgg : 1239822 vulgar: gi|861722527|gb|AKO90009.1| 129 215 . KQ414851.1 1240082 1239821 - 103 M 38 114 G 0 3 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240082 103 - . gene_id 5 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239822 1240082 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240082 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240082 103 - . alignment_id 5 ; Query gi|861722527|gb|AKO90009.1| ; Align 1240083 130 114 ; Align 1239966 168 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722503|gb|AKO90003.1| odorant receptor 39 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 137 Query range: 74 -> 169 Target range: 1243881 -> 1243599 75 : ValThrIleTyrTyrThrGlyAlaLeuTyrGlyThrLeuAlaProLeuValLeuVa : 93 ::: :!!! ! !:!!|||.!!|||!:! ! !! ! ! !!!!|||||| ! IleLeuValSerLeuSerGlyThrLeuPheTyrPheSerIleIlePheValLeuPh 1243881 : atactcGTCTCTCTTTCAGGTACTTTGTTCTATTTCTCGATAATATTCGTATTATT : 1243827 94 : lProIleThrProLeuIleLeuAspValIleAlaProMetAsnGluSerTyrProL : 112 !|||:!!! !|||! !||||||||||||:!!:!!|||:!:||||||!!! !!: eProLeuIleProProIleLeuAspValValSerProLeuAsnGluThrArgSerA 1243826 : TCCATTAATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTC : 1243770 113 : ysHisLeuMetPheGlnGlnIleGluPheLeuValAspAlaAspLysTyrPhePhe : 130 :! :!! ::::::::::::||| !!||| :::||| |||::: rg---IleGluValIleLysLeuGlnTyrLeuPheAspMetGluLysAsnPheTyr 1243769 : GG---ATAGaagtaataaaattgcaataccTGTTCGACAtggagaagaatttttat : 1243719 131 : ProLeuPheIleHisAsnTyrMetGlyThrValAlaPheLeuThrIleIleIleAl : 149 |||::::!!:!!!.! ! ! !!:!! !! ! !:!!! !:!!||||||.! SerLeuTyrValTyrThrGlyTrpCysSerPheMetThrMetMetValIleIleTh 1243718 : tcattatacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCAC : 1243662 150 : aIleAspThrMetLeuMetValTyrIleGlnHisGlyCysAlaLysPheAlaIleL : 168 !||||||.!!:!:! !:!!||| !|||!!.||| !|||!.! !||||||:!!! rIleAspAlaLeuTyrValValIleIleHisHisThrCysGlyLeuPheAlaValC 1243661 : TATAGACGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCTGTTT : 1243605 169 : euGly : 169 !||| ysGly 1243604 : GCGGG : 1243600 vulgar: gi|861722503|gb|AKO90003.1| 74 169 . KQ414851.1 1243881 1243599 - 137 M 38 114 G 1 0 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243881 137 - . gene_id 1 ; sequence gi|861722503|gb|AKO90003.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243881 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243881 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243881 137 - . alignment_id 1 ; Query gi|861722503|gb|AKO90003.1| ; Align 1243882 75 114 ; Align 1243768 114 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722503|gb|AKO90003.1| odorant receptor 39 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 133 Query range: 76 -> 169 Target range: 1224303 -> 1224024 77 : IleTyrTyrThrGlyAlaLeuTyrGlyThrLeuAlaProLeuValLeuValProIl : 95 ::: :::::: :!!|||!:: !..!||| ! !! !:!! ! !!|||:! LeuIlePheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLe 1224303 : ttaattttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATT : 1224249 96 : eThrProLeuIleLeuAspValIleAlaProMetAsnGluSerTyrProLysHisL : 114 :! ! !! !:!!|||||||||:!!||||||:!:||||||!!! |||:::...| uIleAsnProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgL 1224248 : GATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGC : 1224192 115 : euMetPheGlnGlnIleGluPheLeuValAspAlaAspLysTyrPhePheProLeu : 132 ||:!!.!!! ! ! ! ! .!.!!!:!!|||! ! !!:!!:!!|||!:! !:!! euLeuLeuProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerVal 1224191 : TTTTGCTCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTG : 1224138 133 : PheIleHisAsnTyrMetGlyThrValAlaPheLeuThrIleIleIleAlaIleAs : 151 !.!!||| |||! .!!..!:!!:!!! ! !! !!!:|||||||||:!:|| AsnPheHisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAs 1224137 : AATTTTCACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGA : 1224081 152 : pThrMetLeuMetValTyrIleGlnHisGlyCysAlaLysPheAlaIleLeuGly : 169 |! !:!:! !!!:..! !||| ||| !|||!.! !||||||:!:! !||| pMetLeuTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaValCysGly 1224080 : TATGTTATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: gi|861722503|gb|AKO90003.1| 76 169 . KQ414851.1 1224303 1224024 - 133 M 93 279 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224303 133 - . gene_id 2 ; sequence gi|861722503|gb|AKO90003.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224303 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224303 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224303 133 - . alignment_id 2 ; Query gi|861722503|gb|AKO90003.1| ; Align 1224304 77 279 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722515|gb|AKO90005.1| odorant receptor 41 [Microplitis mediator] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 211 Query range: 108 -> 228 Target range: 4456 -> 4096 109 : LeuGlnGluLeuGlyAlaSerLeuAsnAspPheValArgAsnSerAsnGluAsnGluLysPh : 129 ||||||:!!||| !! !..!:!!!!. !! ! !..!!..:!!!!. ! !!|||!:! LeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAs 4456 : TTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGA : 4396 130 : eTyrLeuGlnLysTyrValAspLysCysTrpLysPheHisGlyTyrMetThrCysSerTyrT : 150 ! !!!!|||::!||||||:!!||| |||::: :!!! !!!!:!| pValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheT 4395 : CGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTT : 4333 151 : yrLeuThrThrSerAlaValLeuMetGlyProLeuValLeuProGluLysPheProSerAsp : 170 ||||||||.!!! ! !:!!:!!:!:||| !|||:!!:!! !!!!: ||||||!!!:!! yrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPheProThrAsn 4332 : ACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACCAAC : 4273 171 : AlaValTyrProPheProValAspHisProValValAlaThrIleValTyrLeuHisGlnCy : 191 |||||||||||||||||||||:!! ! ! !:!! !!:!|||:!!!:!:!!||||||! AlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHisGlnSe 4272 : GCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCACCAATC : 4210 192 : sIleValGlyTyrGlnCysAlaAlaGlyMetAlaLeuAspCysGlnAlaAlaLeuPheLeuT : 212 .!!|||||| |||||||||||| ! ::!:!!:!! ! :!!||||||!!.||| rPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeuLeuLeuL 4209 : GTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTGTTATTGC : 4147 213 : rpTyrLeuSerAlaArgPheGluIleLeuIleSerGluThrValAsnIle : 228 !:! !!!!||||||||||||||||||:!:!!!||| ! !|||:!! euPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnVal 4146 : TATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTC : 4097 vulgar: gi|861722515|gb|AKO90005.1| 108 228 . LHQN01020543.1 4456 4096 - 211 M 120 360 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4097 4456 211 - . gene_id 1 ; sequence gi|861722515|gb|AKO90005.1| ; gene_orientation . LHQN01020543.1 exonerate:protein2genome:local cds 4097 4456 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4097 4456 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4097 4456 211 - . alignment_id 1 ; Query gi|861722515|gb|AKO90005.1| ; Align 4457 109 360 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722506|gb|AKO90004.1| odorant receptor 40 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 109 Query range: 336 -> 397 Target range: 280285 -> 280539 337 : IleGlyGlnSerTyrTyrLysSerGluTrpTyrLysLeuSerGlnAspLysSerArgS : 356 :!!||| !||| !|||! !! !!!:||||||:::||| !! ! ! |||:!!!:!. ValGlyValSerThrTyrMetIleAspTrpTyrArgLeuProGlyLysLysAlaGlnG 280286 : GTCGGCGTGTCAACTTACATGATCGACTGGTATCGTTTGCCAGGGAAGAAAGCACAAG : 280343 357 : erLeuMetPheIleGlyHisArgAlaArgArgProLeuLysIleThrAlaGlyLysPh : 375 !!|||!!:.!.||| ! ! !:!!!.! ! !!:!!|||:!!||||||||||||.! lyLeuIleLeuIlePheAlaValSerAsnSerSerIleLysLeuThrAlaGlyLysIl 280344 : GTTTGATACTGATATTCGCCGTGTCGAATTCTTCCATAAAATTAACAGCTGGAAAGAT : 280400 376 : eCysAlaPheSerArgAsnLeuPheIleArg >>>> Target Intron 1 >>>> : 386 ! !! !.!!||| !!:! !||| !!!! 71 bp eIleAspLeuSerLeuSerSerPheCysSer++ 280401 : CATCGATCTCTCTTTAAGCAGCTTCTGCAGCgt......................... : 280435 387 : IleLeuLysThrSerPheGlyTyrLeuSerMetLeu : 397 :!:|||||||||:!!|||!.!|||||||||:!:||| ++ValLeuLysThrAlaPheAlaTyrLeuSerLeuLeu 280436 : agGTGTTAAAAACGGCATTCGCATATCTGAGCTTATTA : 280539 vulgar: gi|861722506|gb|AKO90004.1| 336 397 . KQ414889.1 280285 280539 + 109 M 49 147 5 0 2 I 0 67 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 280286 280539 109 + . gene_id 1 ; sequence gi|861722506|gb|AKO90004.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 280286 280432 . + . KQ414889.1 exonerate:protein2genome:local exon 280286 280432 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 280433 280434 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 280433 280503 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 280502 280503 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 280504 280539 . + . KQ414889.1 exonerate:protein2genome:local exon 280504 280539 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 280286 280539 109 + . alignment_id 1 ; Query gi|861722506|gb|AKO90004.1| ; Align 280286 337 147 ; Align 280504 386 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722494|gb|AKO90000.1| odorant receptor 36 [Microplitis mediator] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 123 Query range: 208 -> 370 Target range: 1682031 -> 1682814 209 : ArgPheGlyValMetLeuLysLysLeuGluValIleSerAspAsnGluProArgTy : 227 !:!||| !:!!:!:! !!!.||||||:!!..!:!!! !..!.!.:!: GlnPheLysIleLeuGlnAsnLysLeuGlnThrValLeuSerGluLysSerSerLy 1682032 : CAGTTTAAGATTTTACAAAACAAACTCCAAACAGTATTGAGTGAGAAatcttcgaa : 1682086 228 : rValIleAlaSerAlaGluArgLysLeuMetGlyGluTrpValAspTyrHisIleS : 246 ::::::!.! ! !||| !.!. !|||!! |||.!.|||||| !! sGluLysSerAlaGlyLeuTyrLysGluPheLysGluCysValGlnTyrHisHisL 1682087 : agaaaaatcagctGGACTGTATAAAGAGTTCAAGGAGTGCGTACAGTATCATCATT : 1682143 247 : erIleLeuAsnLeuIleLysTyrValAsnSerThrTyrSerLysValIlePheVal : 264 !:!!|||::: :::::: :::... ..!!:!!!! !:!:.!.:!! euLeuLeuSerTyrValGluLysLeuGluTyrValPheCysValProLeuMetIle 1682144 : TGCTTCTTTCGtacgtggaaaaattggaatacgTATTTTGTGTCCCGTTGATGATT : 1682197 265 : GlnTyrThrAlaSerSerLeuIleLeuCysThrValAlaTyrValLeuSerHis : 283 |||! !!.!||||||:!!:!!||||||..! !!.!!:! !|||||| GlnLeuLeuValSerSerIleValLeuCysValSerGlyPheGlnLeuSerLeu++ 1682198 : CAATTGCTGGTGTCTAGCATAGTTCTGTGCGTCTCGGGGTTTCAACTATCATTGgt : 1682254 284 : >>>> Target Intron 1 >>>> MetAspAlaLeuSerMetAsnPheAlaGl : 292 285 bp :!!:!!!.!:!!! !|||!!. ! ++ValAsnGlyValLeuMetLysArgLeuLe 1682255 : .........................agGTGAACGGTGTATTGATGAAACGATTGTT : 1682566 293 : yAsnPhePheTyrPheIleAlaMetAsnPheGlnIlePhePheGlnCysPheCysA : 311 ! !.!. !||||||:!!!.! .!.|||||||||... .!. !. uPheLeuAsnTyrPheLeuGlyGlyValIleGlnIlePheLeuIleThrLeuAsnC 1682567 : GTTCCTAAATTACTTTCTCGGTGGAGTGATacagatatttttaataacccTAAATT : 1682623 312 : laAsnGlnValThrLeuGluPheLeuAspIleThrThrAlaLeuTyrAspGluAsn : 329 .!|||.!.:!!! ! !:!! ! !! !||| !||||||:!!|||..! ||| ysAsnAspIleMetGluGlnSerGlyAlaIleGlyThrAlaIleTyrSerCysAsn 1682624 : GCAACGACATAATGGAGCAAAGTGGCGCTATAGGAACAGCGATCTACAGTTGTAAT : 1682677 330 : Trp<-><-><-><->PheAsnLeuSerAsnAsnValArgArgSerMetThrIleIl : 344 ||| :::||| .!. !!|||!:!..!|||! !|||:! TrpGluArgAsnValTyrAsnHisPheTyrGlnPheArgLysAspMetMetIleVa 1682678 : TGGGAGAGGAAtgtttataatcatttttaccAGTTCAGAAAGGATATGATGATTGT : 1682734 345 : eLeuCysGluProPheArgProValLeuPheThrSerSerPhePheIleValLeuS : 363 !:!! ..! !! |||||| !! !.!!:!!:!!:!! |||.!! !:!!| lMetValArgAlaLysArgProCysTyrIleSerAlaAlaLysPhePheProIleS 1682735 : AATGGTACGAGCGAAACGTCCTTGCTACATTTCAGCAGCGAAATTCTTTCCAATCT : 1682791 364 : erLeuGluSerPheThrLysVal : 370 ||||||||||||||||||||||| erLeuGluSerPheThrLysVal 1682792 : CCCTTGAATCGTTCACGAaggta : 1682814 vulgar: gi|861722494|gb|AKO90000.1| 208 370 . KQ414915.1 1682031 1682814 + 123 M 74 222 5 0 2 I 0 281 3 0 2 M 48 144 G 0 12 M 40 120 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682032 1682814 123 + . gene_id 1 ; sequence gi|861722494|gb|AKO90000.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1682032 1682253 . + . KQ414915.1 exonerate:protein2genome:local exon 1682032 1682253 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1682254 1682255 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1682254 1682538 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1682537 1682538 . + . intron_id 0 ; splice_site "aG" KQ414915.1 exonerate:protein2genome:local cds 1682539 1682814 . + . KQ414915.1 exonerate:protein2genome:local exon 1682539 1682814 . + . insertions 12 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1682032 1682814 123 + . alignment_id 1 ; Query gi|861722494|gb|AKO90000.1| ; Align 1682032 209 222 ; Align 1682539 283 144 ; Align 1682695 331 120 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 130 -> 220 Target range: 1635 -> 1905 131 : IleCysValAlaThrValTyrIleValLeuProLeuMetSerProLeuLeuAspIleIleIl : 151 ||| ! !!.!! !:!!!:!:!: ! !|||:!!! !!! !:!!|||||||||:!!:! IleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLe 1636 : ATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACT : 1696 152 : eProLeuAsnGluThrArgGluArgIleLeuProTyrProAlaGluTyrPheIleAspIleG : 172 !||| !||||||:!!|||!!: ! ! ! !||||||||| ! ||||||! !||| ! uProLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluH 1697 : ACCGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGC : 1759 173 : lnLysAsnPhePheMetLeuTyrProHisGlyAlaIleValThrProIleAlaLeuThrVal : 192 !.||| !! ! ! :!! ! !!||| !||| !|||! !! !:!:!.!!!! !||| isLysTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrVal 1760 : ATAAGTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTG : 1819 193 : LeuValGlyPheAspSerLeuTyrAlaGlyPheValGlnHisAlaCysSerMetPheThrIl : 213 ! ! !!!.!! !|||!!! !||| ! ! !!|||||||||!.!|||.!!:!!!!..!!:! TyrPheAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaVa 1820 : TACTTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGT : 1882 214 : eIleGlyArgArgLeuGluAsn : 220 : !||| ::::::...::: lSerGly***LysIleArgSer 1883 : GTCCGGgtaaaaaattcgatcg : 1905 vulgar: gi|861722527|gb|AKO90009.1| 130 220 . KQ414921.1 1635 1905 + 125 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1636 1905 125 + . gene_id 1 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1636 1905 . + . KQ414921.1 exonerate:protein2genome:local exon 1636 1905 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1636 1905 125 + . alignment_id 1 ; Query gi|861722527|gb|AKO90009.1| ; Align 1636 131 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722506|gb|AKO90004.1| odorant receptor 40 [Microplitis mediator] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 306 -> 397 Target range: 807305 -> 807578 307 : LeuPheSerIleValTyrValPheTyrThrValLeuHisLeuPheValTyrCysTyrV : 326 ||| |||.!!||| :!! ! ! !:!!:!!!!.|||!:!:!!|||..!|||! LeuArgSerPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrA 807306 : TTGAGGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACG : 807363 327 : alGlyAspTyrLeuSerPheGluSerSerIleIleGlyGlnSerTyrTyrLysSerGl : 345 .!|||:!! |||..!! ..!!!!..! !|||!.!|||:!! !||| ! ||| laGlyAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLe 807364 : CGGGCAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCT : 807420 346 : uTrpTyrLysLeuSerGlnAspLysSerArgSerLeuMetPheIleGlyHisArgAla : 364 ||||||:::! ! ! ! !! !:!!|||..!|||:!:!!.||| !||||||!.! uTrpTyrArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGly 807421 : TTGGTACCGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGA : 807477 365 : ArgArgProLeuLysIleThrAlaGlyLysPheCysAlaPheSerArgAsnLeuPheI : 384 !.! !|||! !:::|||||||||||||||||| ! !!.!.!:!! ! ! !|||! AsnSerProTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheL 807478 : AATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCA : 807537 385 : leArgIleLeuLysThrSerPheGlyTyrLeuSerMetLeu : 397 ..!|||||||||.!!||| !..!|||||||||:!::!! ysGluIleLeuLysAlaSerGlySerTyrLeuSerValMet 807538 : AGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATG : 807578 vulgar: gi|861722506|gb|AKO90004.1| 306 397 . KQ414940.1 807305 807578 + 154 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807306 807578 154 + . gene_id 1 ; sequence gi|861722506|gb|AKO90004.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807306 807578 . + . KQ414940.1 exonerate:protein2genome:local exon 807306 807578 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807306 807578 154 + . alignment_id 1 ; Query gi|861722506|gb|AKO90004.1| ; Align 807306 307 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722524|gb|AKO90008.1| odorant receptor 44 [Microplitis mediator] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 119 Query range: 281 -> 389 Target range: 807257 -> 807581 282 : GlyTyrGlnIleLeuIleAsnTyrMetThrGlyProAsnSerAspLeuLeuGlnTyrP : 301 |||!:! .!!|||:!! ! ! ||| ! !||| !! !|||::! !| GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 302 : heValTyrIleGlyAlaThrTyrPheMetIleAlaAsnPheCysIleIleSerGluHi : 320 ||||| !!:! !.!! ! .!!..!:!: ! !!:!..! ! .!!.!. heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 321 : sLeuThrAlaGluSerAsnLysValCysGluAlaTyrTrpAsnCysGluTrpTyrAsn : 339 ||| !:!!..!!!!.!.:!!:!!...:!!||| !!:::!!! ! ||||||..! rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 340 : MetProGlnAspCysValLysAspIleIleTyrCysIleValArgSerGlnArgProL : 359 ! ! ! !!...!.!!:!|||:!!:!!! !||| !|||.!!.!. !|||! CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 360 : euAlaLeuGlnAlaGlyLysPheSerThrPheSerIleValThrLeuThrAspValTh : 378 ! !:!! !|||||||||||| ! !!.!.!:!:!! !!|||!!!! !!!::!! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 379 : rLysThrAlaLeuSerTyrLeuSerValLeuArg : 389 !|||.!!:!! !|||||||||||||||:!!!:! uLysAlaSerGlySerTyrLeuSerValMetLys 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAG : 807581 vulgar: gi|861722524|gb|AKO90008.1| 281 389 . KQ414940.1 807257 807581 + 119 M 108 324 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807581 119 + . gene_id 1 ; sequence gi|861722524|gb|AKO90008.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807581 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807581 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807581 119 + . alignment_id 1 ; Query gi|861722524|gb|AKO90008.1| ; Align 807258 282 324 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722503|gb|AKO90003.1| odorant receptor 39 [Microplitis mediator] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 236 -> 347 Target range: 807254 -> 807587 237 : SerAlaLeuValAlaValPheLysLeuAlaMetAsnGluThrGluIleAlaGlyArgP : 256 !!!!.!!!!||| !:!! !! |||::!! !!!.!!:!.!! !||| !||| ThrGlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgS 807255 : ACAGGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGA : 807312 257 : heAlaPhePheThrLeuGlyGluIleCysHisIlePheTyrSerSerTrpGlnGlyGl : 275 ! ! !!.!.! !:!! ! !:!: !!!.:!:!:! !! !:!!!:: !|||.! erPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAs 807313 : GCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAA : 807369 276 : uLeuIleLeuLysHisSerGluSerIlePheTyrPheValTyrGlnAlaAsnTrpAsn : 294 . !:!! !..!!..!!!|||..!||| ! !!.!|||.!.:!! !||| !! nThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyr 807370 : CACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTAC : 807426 295 : AsnThrSerThrArgSerGlnLysLeuMetValProLeuLeuLeuArgSerAlaIleP : 314 ..! ! ! !!.!:!! !:! !:!::!! !:!!:!!! !|||.!! ! | ArgCysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerP 807427 : CGTTGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGC : 807486 315 : roCysArgIleThrAlaGlyLysMetPheGluMetSerLeuLysSerPheSerMetIl : 333 ||! !||||||||||||||||||.!. !! !|||!:!||| !!!|||!.! !|| roTyrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIl 807487 : CTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGAT : 807543 334 : eValLysThrSerPheSerTyrLeuThrValPheAlaSerMet : 347 |:!!|||.!!||| !|||||||||:!!|||.!. ! !||| eLeuLysAlaSerGlySerTyrLeuSerValMetLysValMet 807544 : ACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATG : 807587 vulgar: gi|861722503|gb|AKO90003.1| 236 347 . KQ414940.1 807254 807587 + 101 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807255 807587 101 + . gene_id 1 ; sequence gi|861722503|gb|AKO90003.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807255 807587 . + . KQ414940.1 exonerate:protein2genome:local exon 807255 807587 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807255 807587 101 + . alignment_id 1 ; Query gi|861722503|gb|AKO90003.1| ; Align 807255 237 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722503|gb|AKO90003.1| odorant receptor 39 [Microplitis mediator] Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 154 Query range: 79 -> 169 Target range: 32482 -> 32749 80 : ThrGlyAlaLeuTyrGlyThrLeuAlaProLeuValLeuValProIleThrProLeuIle : 99 |||||| !:!!||| ! !:!! ! !!! !!.!:!!|||! !.!! !|||! !||| ThrGlyPheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIle 32483 : ACAGGATTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATT : 32540 100 : LeuAspValIleAlaProMetAsnGluSerTyrProLysHisLeuMetPheGlnGlnIle : 119 :!!|||||||||||||||:!:||||||||| ! ! ! |||:!!:!! ! ! IleAspValIleAlaProLeuAsnGluSer---ArgHisHisValLeuProTyrAlaGly 32541 : ATCGACGTGATAGCGCCTCTAAACGAATCC---CGACACCATGTACTGCCGTACGCCGGC : 32597 120 : GluPheLeuValAspAlaAspLysTyrPhePheProLeuPheIleHisAsnTyrMetGly : 139 |||!:!!!!|||||| ...|||||||||...|||:!! :!:|||! ! ! ! GluTyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThr 32598 : GAATATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACC : 32657 140 : ThrValAlaPheLeuThrIleIleIleAlaIleAspThrMetLeuMetValTyrIleGln : 159 ..!..! ! !||||||:!! !! |||:::|||::::::...::: :::::: ValThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPhe 32658 : GTTACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTC : 32717 160 : HisGlyCysAlaLysPheAlaIleLeuGly : 169 |||! !|||||||||||| !||||||||| HisValCysAlaLysPheAsnIleLeuGly 32718 : CACGTTTGCGCCAAATTCAATATTCTCGGG : 32749 vulgar: gi|861722503|gb|AKO90003.1| 79 169 . KQ415081.1 32482 32749 + 154 M 30 90 G 1 0 M 59 177 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32483 32749 154 + . gene_id 1 ; sequence gi|861722503|gb|AKO90003.1| ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32483 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32483 32749 . + . insertions 0 ; deletions 1 KQ415081.1 exonerate:protein2genome:local similarity 32483 32749 154 + . alignment_id 1 ; Query gi|861722503|gb|AKO90003.1| ; Align 32483 80 90 ; Align 32573 111 177 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 166 Query range: 136 -> 215 Target range: 32512 -> 32749 137 : TyrIleValLeuProLeuMetSerProLeuLeuAspIleIleIleProLeuAsnGluThr : 156 ||| !:!!:!!! !!!!:!! !! !:!!:!!|||:!:||| ||||||||||||:!! TyrAlaIleValGlnPheLeuProTyrIleIleAspValIleAlaProLeuAsnGluSer 32513 : TACGCAATAGTGCAATTCCTGCCGTACATTATCGACGTGATAGCGCCTCTAAACGAATCC : 32570 157 : ArgGluArgIleLeuProTyrProAlaGluTyrPheIleAspIleGlnLysAsnPhePhe : 176 |||.!.!.!:!!||||||||| !!!.!|||||||||:!!||| |||||| |||... ArgHisHisValLeuProTyrAlaGlyGluTyrPheValAspGlnGlnLysTyrPheLeu 32571 : CGACACCATGTACTGCCGTACGCCGGCGAATATTTCGTCGACcagcaaaaatatttccta : 32630 177 : MetLeuTyrProHisGlyAlaIleValThrProIleAlaLeuThrValLeuValGlyPhe : 196 :!! !||| ! ! ..!..! !!:!!!.!||||||||| !..!!.! ProIleAlaLeuHisMetLeuGlyThrValThrLeuGlyLeuThrValAlaThrAlaVal 32631 : ccAATCGCGTTGCACATGCTCGGGACCGTTACCCTTGGTCTGACGGTCGCCACGGCTGtc : 32690 197 : AspSerLeuTyrAlaGlyPheValGlnHisAlaCysSerMetPheThrIleIleGly : 215 ||||||:::::: |||::! |||!.!|||:!!! |||!.!|||:!!||| AspSerIlePheIlePhePheMetPheHisValCysAlaLysPheAsnIleLeuGly 32691 : gattcaattttcatattcttcatGTTCCACGTTTGCGCCAAATTCAATATTCTCGGG : 32749 vulgar: gi|861722527|gb|AKO90009.1| 136 215 . KQ415081.1 32512 32749 + 166 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32513 32749 166 + . gene_id 1 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32513 32749 . + . KQ415081.1 exonerate:protein2genome:local exon 32513 32749 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32513 32749 166 + . alignment_id 1 ; Query gi|861722527|gb|AKO90009.1| ; Align 32513 137 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 130 -> 220 Target range: 211 -> 481 131 : IleCysValAlaThrValTyrIleValLeuProLeuMetSerProLeuLeuAspIleIleIleP : 152 ||| ! !!.!! !:!!!:!:!: ! !|||:!!! !!! !:!!|||||||||:!!:!!| IleValCysValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuP 212 : ATCGTTTGTGTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTAC : 275 153 : roLeuAsnGluThrArgGluArgIleLeuProTyrProAlaGluTyrPheIleAspIleGlnLy : 173 || !||||||:!!|||!!: ! ! ! !||||||||| ! ||||||! !||| !!.|| roLysAsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLy 276 : CGAAAAACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAA : 338 174 : sAsnPhePheMetLeuTyrProHisGlyAlaIleValThrProIleAlaLeuThrValLeuVal : 194 | !! ! ! :!! ! !!||| !||| !|||! !! !:!:!.!!!! !|||! ! !! sTyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrPhe 339 : GTACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTC : 401 195 : GlyPheAspSerLeuTyrAlaGlyPheValGlnHisAlaCysSerMetPheThrIleIleGlyA : 216 !.!! !|||!!! !||| ! ! !!|||||||||!.!|||.!!:!!!!..!!:!: !||| AlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAlaValSerGly* 402 : GCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCCGTGTCCGGgt : 467 217 : rgArgLeuGluAsn : 220 ::::::...::: **LysIleArgSer 468 : aaaaaattcgatcg : 481 vulgar: gi|861722527|gb|AKO90009.1| 130 220 . LHQN01023902.1 211 481 + 125 M 90 270 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 212 481 125 + . gene_id 1 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 212 481 . + . LHQN01023902.1 exonerate:protein2genome:local exon 212 481 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 212 481 125 + . alignment_id 1 ; Query gi|861722527|gb|AKO90009.1| ; Align 212 131 270 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 185 Query range: 133 -> 215 Target range: 4996 -> 5242 134 : AlaThrValTyrIleValLeuProLeuMetSerProLeuLeuAspIleIleIleProLeuAs : 154 |||.!!:!!!:!!!: !||||||!!!:!!||||||:!!|||||||||:!!!!:|||||||| AlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAs 4997 : GCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAA : 5057 155 : nGluThrArgGluArgIleLeuProTyrProAlaGluTyrPheIleAspIleGlnLysAsnP : 175 ||||||||||! !|||:!:!!! !||||||||| ! ||||||:!!||| .!.||| !! nGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrH 5058 : CGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATC : 5120 176 : hePheMetLeuTyrProHisGlyAlaIleValThrProIleAlaLeuThrValLeuValGly : 195 !!:!:!!:!! !||| ! !:!!|||..! !!!: !:!!:!!|||!!! !!.! isTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 5121 : ATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 5180 196 : PheAspSerLeuTyrAlaGlyPheValGlnHisAlaCysSerMetPheThrIleIleGly : 215 ! !|||:!! !|||!.! ! !|||||||||||||||.!!:!!!!..!!||| !||| CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5181 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5242 vulgar: gi|861722527|gb|AKO90009.1| 133 215 . LHQN01025741.1 4996 5242 + 185 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4997 5242 185 + . gene_id 1 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4997 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4997 5242 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 4997 5242 185 + . alignment_id 1 ; Query gi|861722527|gb|AKO90009.1| ; Align 4997 134 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 127 -> 215 Target range: 1570 -> 1831 128 : SerGlyLeuIleCysValAlaThrValTyrIleValLeuProLeuMetSerProLeuLeuAs : 148 !:!||||||.!!||| ! ..!:!!!:!! ! !:!! !!:!!! ! !!! !:!!||||| AsnGlyLeuPheCysTyr---ValIlePheThrSerValAlaIleThrProArgValLeuAs 1571 : AACGGACTGTTTTGCTAC---GTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGA : 1628 149 : pIleIleIleProLeuAsnGluThrArgGluArgIleLeuProTyrProAlaGluTyrPheI : 169 |:!!||| !||| !||||||:!!|||! ! ! !!!! !||||||||| ! ||| !: pLeuIleSerProLysAsnGluSerArgGlyValAspPheIleTyrProAlaTyrTyrGlyL 1629 : CCTTATTTCACCGAAAAACGAATCGCGTGGGGTTGACTTCATTTATCCTGCATACTACGGTC : 1691 170 : leAspIleGlnLysAsnPhePheMetLeuTyrProHisGlyAlaIleValThrProIleAla : 189 !!||| :!!:!!:!!!:!!:!!!:||| !||| ! ! !|||! ! !!:!!!.! euAspGluGluGluHisTyrTyrIleLeuMetGlyHisMetLeuCysValIleThrValVal 1692 : TCGACGAGGAGGAACATTATTACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTG : 1751 190 : LeuThrValLeuValGlyPheAspSerLeuTyrAlaGlyPheValGlnHisAlaCysSerMe : 210 !!! !|||! !:!!..!! !|||!!!:!!||| !..!.!!|||||||||||||||.!!:! PhePheValTyrIleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLe 1752 : TTTTTCGTCTACATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGCGGATT : 1814 211 : tPheThrIleIleGly : 215 :.!.!.!:!! !||| uLeuAsnValSerGly 1815 : ACTGAACGTCTCTGGG : 1831 vulgar: gi|861722527|gb|AKO90009.1| 127 215 . LHQN01025741.1 1570 1831 + 129 M 6 18 G 1 0 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1571 1831 129 + . gene_id 2 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1571 1831 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1571 1831 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 1571 1831 129 + . alignment_id 2 ; Query gi|861722527|gb|AKO90009.1| ; Align 1571 128 18 ; Align 1589 135 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722506|gb|AKO90004.1| odorant receptor 40 [Microplitis mediator] Target: LHQN01028641.1 Habropoda laboriosa contig28641, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 127 Query range: 10 -> 253 Target range: 1070 -> 338 11 : TyrAlaLeuAlaTrpAsnArgThrSerLeuLysIleValGlyLeuTrpProGluAspAsp<- : 31 |||::!||| !||||||||| !:!!:!!|||! !:!!||| !||||||:!!..!... TyrSerLeuGlnTrpAsnArgTrpAlaMetLysSerIleGlyAlaTrpProGlnSerSerSe 1070 : TACAGTCTCCAGTGGAATCGATGGGCGATGAAAAGCATAGGCGCATGGCCACAGTCCTCGTC : 1010 32 : ><-><->AspGlyIleIleThrLysSerLeuGlyTrpPheCysAlaCysLeuIleIleIleI : 49 !!: !!||||||:!!::!! !|||..! !.!!||| ! ! !:!!:!!.!!! rAsnLeuGluArgIleIleSerArgIleLeuAsnValIleCysTyrThrAlaValLeuPheT 1009 : GAATCTCGAGAGAATCATCTCTCGAATATTGAACGTGATCTGCTACACCGCAGTACTATTCA : 947 50 : leIleTyrLeuProGlnSerAlaSerValTyrValTyrTrpGlyAsnMetAspAlaValIle : 69 ||| :!!||| ||| ! !||| :!! ! ! !!.!.!. !!.!! !:!: hrIle---IleProCysSerLeuHisValMetLeuGluLysGluThrPheTyrThrLysVal 946 : CGATA---ATCCCTTGTTCGCTGCACGTAATGCTGGAAAAAGAGACTTTCTACACGAAAGTG : 890 70 : GluCysLeuSerValAsnGlyProValPheIleThrIleValLysIleIleIlePheArgTy : 90 :!! |||.!! ! .!!! ! ! ! .!! !|||:!!!.. !! !!!:.!. ! LysIleLeuGlyProLeuSerHisTrpValPheCysIleIleSerTyrThrMetLeuLeuLe 889 : AAAATACTCGGTCCGTTGAGCCACTGGGTGTTCTGTATCATCAGTTACACCATGCTGTTGCT : 827 91 : rTyrArgArgValLeuLysArgValIleAspThrMetAlaGluAspTrpSerSerSerArgS : 111 |||!:!..!:!!:::!.! !!.!!:!! !|||! ! ||||||!!!!!!!!!! uArgArgLysThrIleArgHisPhePheAsnHisMetGluThrAspTrpArgThrThrMetA 826 : GCGACGTAAAACCATACGTCACTTTTTCAATCATATGGAGACCGATTGGAGAACGACGAtga : 764 112 : erAsnGluGluTyrAlaValMetLeuLysThrAlaLysIleSerArgAlaIleSerValThr : 131 ...|||::: :::||||||||| !||||||.!!|||||| ! :!!:!!:!! rgLysGluLysLysGluIleMetLeuLysTyrAlaLysPheSerArgTyrAlaAlaIleSer 763 : gaaaggagaagaaagaaataatgcTGAAGTACGCGAAATTTAGTCGATACGCGGCGATTTCT : 704 132 : SerThrIleIleThrAsnSerLeuPheValAlaTyrIlePhePheLysIleTrpGluGlyLe : 152 !!!||||||.!!! !:!!.!! !.!.:!!!.!||| ! !!.!.! ! !:: !:! CysThrIlePheIleHisGlyGlyIleLeuGlyTyrCysValMetThrAlaPheThrThrMe 703 : TGTACGATCTTCATACACGGTGGTATACTTGGATATTGTGTTATGACAGCGTTCACCACGAT : 641 153 : uGluMetSerLysArgThrAsp<->LeuAspProArgLeuSerValGlyLeuLeuHisProA : 172 !! :!: ! !!!.!!!: :!! ! !|||:!! ! ! !! !:!!:!! !! tValValValValGlyAsnGluThrMetIleLeuArgValLeuProLeuProMetTyrLysG 640 : GGTTGTCGTGGTTGGAAACGAGACTATGATCTTGCGCGTGCTGCCGTTACCAATGTACAAAG : 578 173 : laTyrPheProTyrAspThrLysLysIleLysPhePheValProThrTrpIleAlaGlnLeu : 192 .! !.!!||| !||||||!!.! !!:!!. .!!||| :!::!!|||!!! lyLeuLeuProValAspThrAsnThrMetAsnGluIleVal------LeuLeuSerGlnPhe 577 : GGCTCCTTCCAGTCGATACGAATACTATGAACGAGATCGTT------CTTTTGTCACAGTTT : 524 193 : ValAlaThrLeuPheSerMetThrAlaTyrAlaValPheAspThrPheValSerCysMetVa : 213 :!!:!! !!!!.!.:!!! |||::! ! ! !! !:!.!!..!|||..!:!:.. LeuSerGlyPheIleAlaAsnThrSerAlaIleSerValIleSerLeuThrSerAlaLeuTh 523 : CTCTCCGGATTTATAGCGAACACCAGTGCGATCAGTGTTATAAGCCTTACAAGTGCTCTAAC : 461 214 : lLeuHisIleCysGlyGlnLeuAlaValValGlyIleSerLeuGlnAsnLeuIleAsnGluA : 234 !! !||| ! !|||||||||!.!|||||| !:!:|||:!!:!!:!!!!!:!:!:!!!:! rSerHisAlaSerGlyGlnLeuGlyValValMetLeuSerIleGluAspPheValSerAspA 460 : ATCACACGCGTCTGGCCAGTTGGGCGTGGTTATGTTGTCGATCGAAGATTTTGTGAGTGATG : 398 235 : spThrAsnSerAspProAsnTyrPheTrpSerLysPheSerLysThrValGluArgHis : 253 ! !..!!!!! !:!! !! !!::..!:!!.!. !!! !! !||||||!:!||| laArgArgArgGlyLysAspAspHisPheAspGluIleProThrIleValGluLysHis 397 : CGAGACGCAGAGGGAAGGACGATCATTTCGACGAAATACCGACAATCGTGGAGAAACAT : 339 vulgar: gi|861722506|gb|AKO90004.1| 10 253 . LHQN01028641.1 1070 338 - 127 M 20 60 G 0 9 M 20 60 G 1 0 M 108 324 G 0 3 M 26 78 G 2 0 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028641.1 exonerate:protein2genome:local gene 339 1070 127 - . gene_id 1 ; sequence gi|861722506|gb|AKO90004.1| ; gene_orientation . LHQN01028641.1 exonerate:protein2genome:local cds 339 1070 . - . LHQN01028641.1 exonerate:protein2genome:local exon 339 1070 . - . insertions 12 ; deletions 3 LHQN01028641.1 exonerate:protein2genome:local similarity 339 1070 127 - . alignment_id 1 ; Query gi|861722506|gb|AKO90004.1| ; Align 1071 11 60 ; Align 1002 31 60 ; Align 942 52 324 ; Align 615 160 78 ; Align 537 188 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 183 Query range: 133 -> 215 Target range: 5666 -> 5420 134 : AlaThrValTyrIleValLeuProLeuMetSerProLeuLeuAspIleIleIleProLeuAs : 154 |||.!!:!!!:!!!: !||||||!!!:!!||||||:!!|||||||||:!!!!:|||||||| AlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetProLeuAs 5666 : GCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCCGTTGAA : 5606 155 : nGluThrArgGluArgIleLeuProTyrProAlaGluTyrPheIleAspIleGlnLysAsnP : 175 ||||||||||! !|||:!:!!! !||||||||| ! ||||||:!!||| .!.||| !! nGluThrArgAlaArgLeuPheValTyrProAlaTyrTyrPheValAspGluAspLysTyrA 5605 : CGAGACGCGAGCACGGTTGTTCGTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATC : 5543 176 : hePheMetLeuTyrProHisGlyAlaIleValThrProIleAlaLeuThrValLeuValGly : 195 !!:!:!!:!! !||| ! !:!!|||..! !!!: !:!!:!!|||!!! !!.! rgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerValPheCysAla 5542 : GTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCC : 5483 196 : PheAspSerLeuTyrAlaGlyPheValGlnHisAlaCysSerMetPheThrIleIleGly : 215 ! !|||:!! !|||!.! ! !|||||||||||||||.!!:!!!!..!!||| !||| CysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5482 : TGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5421 vulgar: gi|861722527|gb|AKO90009.1| 133 215 . LHQN01028732.1 5666 5420 - 183 M 82 246 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5666 183 - . gene_id 1 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5666 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5666 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5666 183 - . alignment_id 1 ; Query gi|861722527|gb|AKO90009.1| ; Align 5667 134 246 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722527|gb|AKO90009.1| odorant receptor 45 [Microplitis mediator] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 129 -> 181 Target range: 1878 -> 1722 130 : LeuIleCysValAlaThrValTyrIleValLeuProLeuMetSerProLeuLeuAspIleIl : 150 |||.!! ! !|||.!!:!!!:!:!! !:!!|||!!! !! !:!!||||||||| LeuPheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAspIleCy 1878 : TTGTTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTG : 1818 151 : eIleProLeuAsnGluThrArgGluArgIleLeuProTyrProAlaGluTyrPheIleAspI : 171 ! |||||||||:!!||||||:!!|||:!:!!! !||||||||| ! |||!::!!:||| sAlaProLeuAsnLysThrArgLysArgValPheValTyrProAlaTyrTyrTrpMetAspP 1817 : CGCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCAGCCTATTACTGGATGGATC : 1755 172 : leGlnLysAsnPhePheMetLeuTyrProHis : 181 !:!!:!! !!!:!.!.!!::!! !||| roGluGlnTyrTyrMetIleMetIleIleHis 1754 : CTGAGCAATACTACATGATAATGATAATACAC : 1723 vulgar: gi|861722527|gb|AKO90009.1| 129 181 . LHQN01028732.1 1878 1722 - 103 M 52 156 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 1723 1878 103 - . gene_id 2 ; sequence gi|861722527|gb|AKO90009.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 1723 1878 . - . LHQN01028732.1 exonerate:protein2genome:local exon 1723 1878 . - . insertions 0 ; deletions 0 LHQN01028732.1 exonerate:protein2genome:local similarity 1723 1878 103 - . alignment_id 2 ; Query gi|861722527|gb|AKO90009.1| ; Align 1879 130 156 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722450|gb|AKO89986.1| odorant receptor 22 [Microplitis mediator] Target: KQ414573.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold16, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 177 Query range: 158 -> 220 Target range: 648846 -> 648660 159 : SerSerIleValLeuGluLysProValLeuPheHisValGluTyrPheTyrAspLeuG : 178 |||!:!:!: ! !!!:::!|||:!!:!!|||!..||||||:!!||| |||:!!! SerAsnValSerSerAspArgProLeuValPheArgValGluHisPheValAspValA 648846 : AGCAATGTGTCCAGCGATCGACCGTTGGTATTTCGAGTTGAACATTTCGTGGATGTGG : 648789 179 : luLysTyrTyrTyrProLeuLeuIleHisSerTyrPheGlyThrMetAlaTyrMetTh : 197 !:|||||||||||| !!||||||:!:||||||||||||||||||!!:|||!:!! .! spLysTyrTyrTyrThrLeuLeuValHisSerTyrPheGlyThrIleAlaPheThrAl 648788 : ACAAATACTACTATACCCTTTTAGTGCATTCATACTTTGGTACTATAGCATTTACTGC : 648732 198 : rValAlaValAlaIleAspSerMetPheMetValTyrValGlnHisAlaCysAlaIle : 216 !:!!!.!|||:!!|||:!!|||!!:.!. |||||||||! !|||! !|||!.!:!! aIleValValSerIleAsnSerIleIleAlaValTyrValLeuHisGluCysGlyLeu 648731 : GATTGTTGTCTCTATCAACTCGATAATAGCTGTGTACGTCCTACACGAATGCGGACTT : 648675 217 : PheAlaValIle : 220 ! !! !:!!:!! CysGluIleLeu 648674 : TGTGAAATCTTA : 648661 vulgar: gi|861722450|gb|AKO89986.1| 158 220 . KQ414573.1 648846 648660 - 177 M 62 186 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414573.1 exonerate:protein2genome:local gene 648661 648846 177 - . gene_id 1 ; sequence gi|861722450|gb|AKO89986.1| ; gene_orientation . KQ414573.1 exonerate:protein2genome:local cds 648661 648846 . - . KQ414573.1 exonerate:protein2genome:local exon 648661 648846 . - . insertions 0 ; deletions 0 KQ414573.1 exonerate:protein2genome:local similarity 648661 648846 177 - . alignment_id 1 ; Query gi|861722450|gb|AKO89986.1| ; Align 648847 159 186 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722456|gb|AKO89988.1| odorant receptor 24 [Microplitis mediator] Target: KQ414583.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold34, whole genome shotgun sequence Model: protein2genome:local Raw score: 350 Query range: 90 -> 232 Target range: 619534 -> 619960 91 : ValPheValIleLeuGlyAsnGlnLysArgIleGlnValLeuLeuAspLysLeuSerT : 110 |||.!!||||||:!! !...!::|||||||||:!!! !|||:!!:!!! ! !..! ValIleValIleValLeuArgArgLysArgIleLysAspLeuIleAsnIleThrGluG 619535 : GTAATTGTTATCGTTCTACGACGTAAACGTATCAAAGATCTTATAAATATAACCGAGG : 619592 111 : hrThrAsnTyrTyrHisAsnAspAspLysTyrGluArgValPheThrTyrTyrAlaTr : 129 !! ! !:! !!.!|||:!!|||||||||||||||:!! ! |||||||||.!!|| lyLysLeuPheIleArgAsnAsnAspLysTyrGluArgIleValThrTyrTyrThrTr 619593 : GAAAACTGTTTATCCGCAATAACGATAAATACGAACGTATCGTAACGTATTACACTTG : 619649 130 : pGlnGlyLeuTyrHisHisIleAlaTyrGlnSerPheGlyThrValAlaValLeuCys : 148 |||||||:!!!:!|||||||||.!!|||||||||||||||! !:!!||||||:!!! ! pGlnGlyIlePheHisHisIleThrTyrGlnSerPheGlyIleIleAlaValIlePhe 619650 : GCAAGGAATTTTCCATCATATCACTTATCAAAGCTTCGGTATCATAGCTGTAATCTTC : 619706 149 : TrpGlyLeuThrProLeuAlaAspAlaValAlaGlyAsnThrArgArgLeuProMetG : 168 |||..!! !||| !!:!!!.!:!! !:!! ! !!!.. !!:!! !||| !!!:: TrpSerCysThrAlaValValAsnLeuMetLysArgThrTyrGlnLeuLeuLeuIleL 619707 : TGGTCATGCACAGCAGTTGTAAATCTGATGAAACGGACGTATCAACTTTTATTGATAA : 619766 169 : luAlaTrpTyrProTyrAsnThrLysLysAsnProAlaPheGluIleThrSerGlyHi : 187 !!||||||||||||||||||..!! !! :::||||||!::|||...||| || ysAlaTrpTyrProTyrAsnValThrIleSerProAlaTyrGluPheThrIleLeuHi 619767 : AAGCATGGTATCCTTATAATGTAACAATTTCGCCAGCTTAtgaatttactattttaca : 619823 188 : sGlnAlaValAlaValLeuIleAlaCysValHisAsnIleGlyMetAspThrLeuVal : 206 ||||!.!|||!.!||| !::: |||::::::|||:!!!.!!!:||||||!!!:!! sGlnValValGlyValThrValAsnCysIleAsnAsnValAlaIleAspThrPheIle 619824 : tCAAGTCGTGGGTGTCACTGtaaattgtattaataatGTAGCAATAGATACTTTTATA : 619880 207 : ThrGlyLeuIleAsnAlaAlaCysCysGlnLeuGluIleIleLysGlnAsnLeuLysA : 226 ||||||!!!|||! .!!||||||||||||||| !:!!:!!!.. ! |||:!!...: ThrGlyPheIleIleThrAlaCysCysGlnLeuThrLeuLeuSerTyrAsnIleSerS 619881 : ACAGGTTTTATAATAACTGCTTGTTGCCAATTGACACTCTTAAGTTATAACATCTCTT : 619940 227 : snValAspLeuAspPheGlu : 232 :::!! !!! !!!: ||| erIleHisTyrGluAlaGlu 619941 : CGATACACTATGAAGCGGAG : 619960 vulgar: gi|861722456|gb|AKO89988.1| 90 232 . KQ414583.1 619534 619960 + 350 M 142 426 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414583.1 exonerate:protein2genome:local gene 619535 619960 350 + . gene_id 1 ; sequence gi|861722456|gb|AKO89988.1| ; gene_orientation . KQ414583.1 exonerate:protein2genome:local cds 619535 619960 . + . KQ414583.1 exonerate:protein2genome:local exon 619535 619960 . + . insertions 0 ; deletions 0 KQ414583.1 exonerate:protein2genome:local similarity 619535 619960 350 + . alignment_id 1 ; Query gi|861722456|gb|AKO89988.1| ; Align 619535 91 426 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722444|gb|AKO89984.1| odorant receptor 20 [Microplitis mediator] Target: KQ414608.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold62, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 294 -> 371 Target range: 1306928 -> 1306700 295 : LeuLeuAsnThrIleAspGluLeuAsnAlaCysPheSerSerCysMetLeuMetGl : 313 |||! !!:!..!:!::!!!:::::||| |||::: ! !:!:!!!:!:|| LeuTyrSerValValAsnAspValAsnAsnLeuPheThrProIleValPheValGl 1306928 : TTATACAGCGTGGTGAATGatgtgaataatttatttactccCATCGTTTTCGTACA : 1306874 314 : nLeuPheAlaSerPheSerMetIleCysLeuThrGlyPheGlnAlaValLeuGlyA : 332 ||||.!!.!!||| ! !:!:|||||||||!:!|||||| ||||||!!!! ! nLeuLeuThrSerGlyIleValIleCysLeuSerGlyPhe---AlaValPheAspA 1306873 : ACTTCTTACAAGCGGAATAGTAATTTGTTTAAGTGGATTC---GCGGTTTTCGATA : 1306820 333 : laThrThrLysThrSerLeuIleLysPheValLeuTyrLeuGlyAlaAlaPheSer : 350 ! !.!!:::|||..!:!!:!:|||!:!|||! !||||||..!:!! !!::! ! snAspAlaArgThrAspIleLeuLysTyrValSerTyrLeuSerSerIleTrpLeu 1306819 : ACGACGCCCGTACCGATATTCTGAAATACGTATCTTATTTGTCCTCGATTTGGTTG : 1306766 351 : GlnLeuLeuTyrTrpCysTrpPheGlyAsnGluLeuLeuTyrGluValPheIleLe : 369 |||||||||! ||||||! ! !|||.!. |||:!! ! ||| !!!. !:! GlnLeuLeuLeuTrpCysLeuProGlyGluIleLeuValGlnGluSerLeuGluIl 1306765 : CAACTTTTGTTATGGTGTTTGCCCGGTGAAATTCTCGTTCAAGAGAGTTTAGAAAT : 1306709 370 : uProHis : 371 ! !||| eGlyHis 1306708 : AGGACAC : 1306701 vulgar: gi|861722444|gb|AKO89984.1| 294 371 . KQ414608.1 1306928 1306700 - 118 M 32 96 G 1 0 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414608.1 exonerate:protein2genome:local gene 1306701 1306928 118 - . gene_id 1 ; sequence gi|861722444|gb|AKO89984.1| ; gene_orientation . KQ414608.1 exonerate:protein2genome:local cds 1306701 1306928 . - . KQ414608.1 exonerate:protein2genome:local exon 1306701 1306928 . - . insertions 0 ; deletions 1 KQ414608.1 exonerate:protein2genome:local similarity 1306701 1306928 118 - . alignment_id 1 ; Query gi|861722444|gb|AKO89984.1| ; Align 1306929 295 96 ; Align 1306833 328 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722444|gb|AKO89984.1| odorant receptor 20 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence Model: protein2genome:local Raw score: 259 Query range: 14 -> 229 Target range: 454085 -> 456635 15 : MetAlaIleAlaGlyLeuArgLeuCysGlyIleTrpSerLeuAspSerSerSerProI : 34 :!: !:!: !..!! !|||! ! !!|||:!:|||...::::::|||... ! !! ValLeuValPheSerTyrArgTyrSerGlyLeuTrpLysIleGluSerLysHisSerS 454086 : gTCTTGGTGTTTTCATACAGATACAGTGGCCTctggaaaattgaatcgaaacACTCGT : 454143 35 : lePheLeuLysLeuLeuHisAsnIleSerAsnIlePheGlyIleIleThrLeuIleIl : 53 |||:!!! !:!! !:!! ! ! !!!.:!!!:: !:!!|||! !:!!! !:! erPheMetThrIleAlaTyrPheAlaTyrLysLeuTrpIleLeuIleMetMetAsnVa 454144 : CGTTTATGACAATCGCTTACTTCGCGTACAAACTATGGATACTCATAATGATGAACGT : 454200 54 : ePheValGlyThrLeuThrIleAspLeuLeuLeuAsnSerAsnAspLeuLeuIleAla : 72 !|||!.!! !|||:!! ! !|||:!!! ! !|||! !:!!:!!|||! !||| ! lPheAlaValThrIlePheAlaAspIleTyrGluAsnMetAspAsnLeuSerIleIle 454201 : ATTCGCCGTCACTATATTCGCAGACATCTACGAGAACATGGACAACCTATCGATCATT : 454257 73 : ThrAspAspGlyCysTyrLeuAlaGlyIleSerValIleValPheLysValTyrGlnP : 92 !:!||||||||||||!:!|||||||||||| !|||:!::!!||||||!.! .!.! SerAspAspGlyCysPheLeuAlaGlyIleLeuValValIlePheLysAlaMetAsnT 454258 : AGCGACGACGGTTGTTTCCTCGCTGGAATACTCGTCGTGATTTTTAAGGCTATGAATT : 454317 93 : heHisArgHisHisLysArgIleLysAsnLeuThrAspAlaThrTyrGlnProIleTy : 111 :!!!.! !|||!..||| ||| ...||| !|||! !! !! .!. ! ! ! yrGlnIleHisGlnLysSerIleIleLysLeuLeuAspAspIleLeuAsnCysAlaAs 454318 : ACCAAATTCATCagaaaagtataattaaattgCTCGACGACATATTGAACTGTGCTGA : 454374 112 : rValPheTrpLysSerThr{A} >>>> Target Intron 1 >>>> {sp}Ile : 119 !! !.!!!! !:!! !:!!{:} 1905 bp {!!}! ! pAspLeuCysArgPheSer{A}++ ++{sn}Thr 454375 : TGATCTCTGCAGATTTTCC{A}gt.........................ag{AT}ACC : 456303 120 : GlyVal<->LysThrValLeuArgThrAsnLysPheTyrGluAspLeuGlyPheThrP : 138 ! !..! ||| !:!!:!!!.! ! :::... :::! !||| ! GluThrAsnLysTyrIleIleAsnArgTyrTyrLysPheAsnLysValValPheTyrG 456304 : GAAACGAATAAATACATCATCAACCGATactataaatttaacaaagtaGTTTTCTACG : 456363 139 : hePheValSerLeuGlyGlyPheLeuValIleAlaLeuIlePhePheValProThrGl : 157 ||| !! !|||||| !! !!|||! !|||||||||:!!|||||| !||| !:! lyPheSerMetLeuGlyCysValLeuGlyIleAlaLeuLeuPhePheSerProLeuGl 456364 : GGTTCAGCATGTTAGGATGCGTTTTAGGAATAGCTCTGCTATTTTTCTCGCCTCTGCA : 456420 158 : uGluGlyAlaLeuProIleArgGlyAlaTyrProPheAsnThrThrIleSerProMet : 176 !.!.||| ||||||||||||!.! !|||||||||||||||||||||||||||.!. nAsnGly---LeuProIleArgAlaLysTyrProPheAsnThrThrIleSerProPhe 456421 : GAACGGT---TTGCCCATCAGAGCAAAGTATCCTTTTAACACCACTATATCTCCTTTC : 456474 177 : HisGluValAlaPheCysLeuGlnIleTyrAlaValThrTyrGlyLeuMetValIleV : 196 !..|||:!!!.!!!...!:!!:!!! !!:!||||||:!! !||||||:!! !|||| ArgGluIleGlyLeuAlaValGluThrPheAlaValSerGlyGlyLeuLeuSerIleV 456475 : CGAGAGATTGGTTTGGCTGTCGAAACTTTTGCTGTTTCTGGTGGTTTATTGAGCATAG : 456534 197 : alLeuMetAspGlyMetGlyLeuGlyIleMetArgTrpLeuAsnValGlnCysIleIl : 215 || !||||||..!!!: ! ! !!!: !!! !:!!!.!!.!|||! ! !!! alAlaMetAspAsnIleThrAlaMetMetCysSerGlnIleThrAlaGlnPheAspMe 456535 : TTGCCATGGACAATATCACTGCAATGATGTGCAGCCAGATCACTGCTCAGTTCGATAT : 456591 216 : eLeuAlaSerAsnTyrArgAsnCysArgThrAsnGlnAsnAsn : 229 :||| ! ! !!:!..!!!.|||! !!:!.!. !.!.||| tLeuAsnValLeuPheGluLysCysThrSerGlnValGluAsn 456592 : GTTGAACGTACTTTTTGAGAAGTGTACTAGTCAAGTGGAGAAT : 456635 vulgar: gi|861722444|gb|AKO89984.1| 14 229 . KQ414618.1 454085 456635 + 259 M 103 309 S 0 1 5 0 2 I 0 1901 3 0 2 S 1 2 M 3 9 G 0 3 M 38 114 G 1 0 M 69 207 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 454086 456635 259 + . gene_id 1 ; sequence gi|861722444|gb|AKO89984.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 454086 454395 . + . KQ414618.1 exonerate:protein2genome:local exon 454086 454395 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 454396 454397 . + . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 454396 456300 . + . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 456299 456300 . + . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 456301 456635 . + . KQ414618.1 exonerate:protein2genome:local exon 456301 456635 . + . insertions 3 ; deletions 1 KQ414618.1 exonerate:protein2genome:local similarity 454086 456635 259 + . alignment_id 1 ; Query gi|861722444|gb|AKO89984.1| ; Align 454086 15 309 ; Align 456303 119 9 ; Align 456315 122 114 ; Align 456429 161 207 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722444|gb|AKO89984.1| odorant receptor 20 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 277 -> 330 Target range: 457511 -> 457670 278 : SerAspCysPheIleGlyArgPheLysLysCysIleLysAsnHisGlnArgLeuLeuA : 297 ..!:!! |||:!! !!|||!:!|||! |||:!::!! !||||||||||||:!!: AspAsnThrPheLeuArgArgTyrLysThrCysLeuGlnPheHisGlnArgLeuIleS 457512 : GACAACACGTTTCTTCGTCGTTACAAGACCTGTCTGCAATTTCATCAGAGATTGATCT : 457569 298 : snThrIleAspGluLeuAsnAlaCysPheSerSerCysMetLeuMetGlnLeuPheAl : 316 :!! !! ! ! !!:! !||| ! !!:!|||||| !!|||!!!:!:|||:!!.!!:! erIleThrLysAspTyrAsnArgIleTyrSerSerSerMetPheValGlnMetIleSe 457570 : CCATAACCAAAGATTACAACAGAATCTACAGCTCGAGCATGTTCGTCCAGATGATCTC : 457626 317 : aSerPheSerMetIleCysLeuThrGlyPheGlnAlaValLeu : 330 !||| !|||!!:|||||||||||||||||||||||||||:!! rSerThrSerIleIleCysLeuThrGlyPheGlnAlaValVal 457627 : CAGCACTTCGATTATTTGCTTAACTGGTTTCCAAGCTGTCGTG : 457670 vulgar: gi|861722444|gb|AKO89984.1| 277 330 . KQ414618.1 457511 457670 + 133 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 457512 457670 133 + . gene_id 2 ; sequence gi|861722444|gb|AKO89984.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 457512 457670 . + . KQ414618.1 exonerate:protein2genome:local exon 457512 457670 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 457512 457670 133 + . alignment_id 2 ; Query gi|861722444|gb|AKO89984.1| ; Align 457512 278 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722475|gb|AKO89994.1| odorant receptor 30 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 184 Query range: 93 -> 232 Target range: 1052965 -> 1052548 94 : TyrLysArgMetGlnTyrLeuLeuCysAspMetGluLysTyrValThrLysAlaLy : 112 ||| !:!:||| :!!:!! !!:||| ! !||||||! !:!!|||:! TyrGlySerLeuGlnArgIleIleThrGluMetIleThrTyrValLysGluAlaGl 1052965 : TATGGTTCTTTACAGCGAATAATTACAGAAATGATCACGTACGTCAAAGAGGCGCA : 1052911 113 : sProHisGluArgAspLeuPheIleLysTyrIleLysArgCysGlyLysLeuHisL : 131 !! ! !||||||!!::!!.!! !!!.||||||:!!!:!||| ! !!!:!! nGlnPheGluArgGluIleLeuHisAsnTyrIleGlnLysCysLysLeuPheTyrG 1052910 : GCAATTCGAAAGGGAAATTCTCCACAACTATATCCAAAAATGCAAACTTTTTTACG : 1052854 132 : euThrValMetGlySerGlyLeuLeuIleIleHisIleIleIleLeuAlaProIle : 149 ! ! !:!: !!!! !! !||| ! ! ! !.!!:!!|||!.!|||:!! lyGlySerLeuIleTrpThrTyrLeuCysAlaThrCysPheValLeuGlyProVal 1052853 : GTGGTTCGTTAATTTGGACATACCTCTGTGCAACTTGTTTCGTATTAGGACCCGTT : 1052800 150 : AlaLeuProGlnProPheProAsnIleAlaGluTyrProPheProIleAspGlyHi : 168 !.!||||||.!.|||||||||!:!! !|||||||||||||||! !:!!:!! !! ValLeuProAsnProPheProSerSerAlaGluTyrProPheArgValAsnArgTh 1052799 : GTTCTACCAAATCCTTTTCCCAGCAGTGCAGAGTATCCGTTTCGCGTTAATCGTAC : 1052743 169 : sProThrTyrGluLeuLeuTyrLeuHisGlnSerCysAlaThrIleHisCysLeuS : 187 |||! ! !!! :!!:!!|||||||||||||||! ! !!:!.!!!!.! ! !: rProMetAsnAlaIleValTyrLeuHisGlnSerPheIleSerPheGlnTyrSerA 1052742 : ACCCATGAATGCTATTGTCTACCTGCACCAATCTTTCATAAGCTTTCAGTACAGTG : 1052686 188 : erIleProAlaPheAspCysGlnIleAlaMetLeuLeuTrpTyrAlaGlyAlaArg : 205 !! ! !..! ! ..! ! !|||:!:||||||||| !.!!!.!|||||| laHisIleCysValSerIlePheGlyAlaLeuLeuLeuTrpIleThrAlaAlaArg 1052685 : CACACATATGTGTAAGCATTTTCGGAGCTCTTTTACTCTGGATTACGGCTGCGAGA : 1052632 206 : LeuGluLeuLeuSerGluGluCysLysThrIleThrAspAsnLysGlnPheValGl : 224 !!!.!.! !|||!!! !||| !:!! !! !:!!..!! ! ! ..!!!.:!! PheHisCysLeuThrLeuGluValGlnGlnSerSerSerIleHisMetLeuIleIl 1052631 : TTTCATTGCTTAACTCTGGAGGTTCAACAAAGTTCAAGTATTCATATGTTAATCAT : 1052575 225 : uCysIleLysGlnHisGlnTyrLeu : 232 |||:!!|||:!!!!.! ! ||| eCysValLysLysGlnLeuLeuLeu 1052574 : CTGTGTTAAGAAACAGCTACTACTG : 1052549 vulgar: gi|861722475|gb|AKO89994.1| 93 232 . KQ414618.1 1052965 1052548 - 184 M 139 417 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1052549 1052965 184 - . gene_id 1 ; sequence gi|861722475|gb|AKO89994.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1052549 1052965 . - . KQ414618.1 exonerate:protein2genome:local exon 1052549 1052965 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1052549 1052965 184 - . alignment_id 1 ; Query gi|861722475|gb|AKO89994.1| ; Align 1052966 94 417 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722475|gb|AKO89994.1| odorant receptor 30 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 181 Query range: 97 -> 233 Target range: 1058143 -> 1057735 98 : GlnTyrLeuLeuCysAspMetGluLysTyrValThrLysAlaLysProHisGluAr : 116 ||| |||! !! !|||||||||!!.!:! !! ! ! |||! |||:: GlnValLeuTyrPheAspMetGluAsnPheCysArgTyrAlaThrSerLysGluLy 1058143 : CAGGTATTGTACTTCGACATGGAGAATTTCTGCAGATACGCCACCtcgaaggaaaa : 1058089 117 : gAspLeuPheIleLysTyrIleLysArgCysGlyLysLeuHisLeuThrValMetG : 135 : :::.!. !::!|||:!: ! |||! ! ! ! !!!||| !! ! !!!: sValValLeuGlnArgTyrValAspArgTyrLysTyrPheHisGlyIleTyrIleL 1058088 : agttgtcCTGCAACGATACGTGGACAGATACAAATACTTTCATGGGATTTATATAT : 1058032 136 : lySerGlyLeuLeuIleIleHisIleIleIleLeuAlaProIleAlaLeuProGln : 153 !!!! !!!!!|||! ! ! !.!!:!!||| !!.!|||:!: !! !|||||| euTrpCysPheLeuThrThrIlePheValIleSerGlyProLeuTyrSerProGln 1058031 : TATGGTGCTTCCTCACGACCATCTTCGTCATAAGTGGTCCATTGTACTCACCACAG : 1057978 154 : ProPheProAsnIleAlaGluTyrProPheProIleAspGlyHisProThrTyrGl : 172 !!||||||!.! !||| !|||||||||! !:!:!!: ! ! ! ! ThrPheProThrHisAlaIleTyrProPheGlnValGluHisThrLeuPheLysIl 1057977 : ACGTTCCCCACTCATGCGATATATCCTTTCCAAGTGGAACATACACTGTTCAagat : 1057921 173 : uLeuLeuTyrLeuHisGlnSerCysAlaThrIleHisCysLeuSerIleProAlaP : 191 ::::::|||...|||||||||! !.! !.!!!!....! !:!! ! !|||. eValIleTyrPheHisGlnSerLeuValGlyPheGlnAlaSerAlaGlyMetAlaI 1057920 : tgttatttatttccatCAGTCGTTAGTTGGTTTTCAGGCGTCCGCTGGTATGGCCA : 1057864 192 : heAspCysGlnIleAlaMetLeuLeuTrpTyrAlaGlyAlaArgLeuGluLeuLeu : 209 !!||| !|||||||||:!:|||||| ! ||||||!.!||||||!!!||||||||| leAspThrGlnIleAlaLeuLeuLeuArgTyrAlaAlaAlaArgPheGluLeuLeu 1057863 : TCGACACTCAAATTGCTCTTCTTCTGCGATACGCGGCTGCCAGGTTCGAGCTATTG : 1057810 210 : SerGluGluCysLysThrIleThrAspAsnLysGlnPheValGluCysIleLysGl : 228 .!!.!.||| ::!!.! !!.! !:!! :!!||| !! ||||||:!!:! GlyAsnGluMetArgAsnAlaAsnThrHisCysGluPheAsnAlaCysIleGluLy 1057809 : GGAAACGAGATGCGAAATGCAAATACTCACTGTGAATTCAATGCCTGCATAGAGAA : 1057753 229 : nHisGlnTyrLeuLeu : 233 !|||... ! |||||| sHisSerGluLeuLeu 1057752 : GCACAGTGAACTTCTC : 1057736 vulgar: gi|861722475|gb|AKO89994.1| 97 233 . KQ414618.1 1058143 1057735 - 181 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057736 1058143 181 - . gene_id 2 ; sequence gi|861722475|gb|AKO89994.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1057736 1058143 . - . KQ414618.1 exonerate:protein2genome:local exon 1057736 1058143 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057736 1058143 181 - . alignment_id 2 ; Query gi|861722475|gb|AKO89994.1| ; Align 1058144 98 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722475|gb|AKO89994.1| odorant receptor 30 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 95 -> 233 Target range: 1062775 -> 1062361 96 : ArgMetGlnTyrLeuLeuCysAspMetGluLysTyrValThrLysAlaLysProHi : 114 |||!!:||| |||:!! ! ! :!::!! !!:!|||! ! !|||!!. !:! ArgIleGlnValLeuValGlyLysValLysAlaPheValLysValAlaAsnLysAs 1062775 : CGTATTCAGGTGTTGGTAGGAAAAGTAAAGGCGTTTGTAAAAGTGGCAAACAAGAA : 1062721 115 : sGluArgAspLeuPheIleLysTyrIleLysArgCysGlyLysLeuHisLeuThrV : 133 !|||! ! ! :!!.!. ! !|||:!: ! |||! ! !::!!!! ! !|||: nGluIleLysIleIleGlnGlyTyrValAspArgTyrLysArgPhePheGlyThrI 1062720 : CGAGATTAAGATAATACAAGGATACGTGGATCGATATAAACGATTTTTCGGAACAA : 1062664 134 : alMetGlySerGlyLeuLeuIleIleHisIleIleIleLeuAlaProIleAlaLeu : 151 !! !.!! !:!!:!!! ! ! !! .!!! !|||||||||:!: !! ! leAlaMetGlyTyrValMetThrGlyIleThrPheSerLeuAlaProLeuPheSer 1062663 : TAGCAATGGGATACGTAATGACTGGAATCACGTTCAGTTTGGCGCCTCTGTTTTCC : 1062610 152 : ProGlnProPheProAsnIleAlaGluTyrProPheProIleAspGlyHisProTh : 170 !||| !!!.||| !!.! ! !|||||| !!||| ! !! !.. ValGlnGluLeuProAlaAspGlyTrpIleProPheSerIleLysProLeuGlyVa 1062609 : GTACAAGAATTGCCAGCAGACGGATGGATCCCGTTTTCCATTAAACCACTGGGAGT : 1062553 171 : rTyrGluLeuLeuTyrLeuHisGlnSerCysAlaThrIleHisCysLeuSerIleP : 189 !||| |||:!!|||!!! ||| !! !..!! !:!!!!. !! ! ! lTyrCysLeuValTyrPheValGlnValTyrCysIleLeuGlnThrAlaPheCysI 1062552 : ATATTGCCTCGTATACTTTGTGCAGGTTTACTGCATTCTCCAAACAGCGTTCTGCA : 1062496 190 : roAlaPheAspCysGlnIleAlaMetLeuLeuTrpTyrAlaGlyAlaArgLeuGlu : 207 !::! ! |||! !..!||||||:!:|||:!! ! !:!:!!!.!|||!:!|||!!: leSerValAspPheMetIleAlaLeuLeuIleSerPheSerAlaAlaLysLeuAsp 1062495 : TTAGCGTGGATTTCATGATCGCTCTTCTAATCAGCTTCTCCGCGGCTAAATTAGAC : 1062442 208 : LeuLeuSerGluGluCysLysThrIleThrAspAsnLysGlnPheValGluCysIl : 226 :!!|||.!! !:!! ::!! ! !.!! !:!! ! !.!.|||...|||:! IleLeuGlyMetLysLeuArgLysAlaAsnGlyHisAspValLeuValSerCysVa 1062441 : ATACTGGGGATGAAACTGCGAAAAGCGAATGGCCACGACGTGCTGGTAAGCTGTGT : 1062385 227 : eLysGlnHisGlnTyrLeuLeu : 233 !|||:!!|||||| ! :!!:!! lLysGluHisGlnGluIleIle 1062384 : CAAAGAACACCAAGAGATAATA : 1062362 vulgar: gi|861722475|gb|AKO89994.1| 95 233 . KQ414618.1 1062775 1062361 - 117 M 138 414 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1062362 1062775 117 - . gene_id 3 ; sequence gi|861722475|gb|AKO89994.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1062362 1062775 . - . KQ414618.1 exonerate:protein2genome:local exon 1062362 1062775 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1062362 1062775 117 - . alignment_id 3 ; Query gi|861722475|gb|AKO89994.1| ; Align 1062776 96 414 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722475|gb|AKO89994.1| odorant receptor 30 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 110 Query range: 308 -> 371 Target range: 1055891 -> 1055702 309 : LeuTyrGluSerProTrpValGlnAsnSerLysGluLeuAsnSerSerIleLeuPh : 327 :!!|||.!.!!! !||| !!:!!!!...!! ..!|||.!.!.!!.!:!!! !!: IleTyrAsnThrAspTrpPheGluLysAspIleArgLeuGlnLysLysValTyrTy 1055891 : ATTTACAACACAGATTGGTTCGAAAAGGATATTAGATTGCAAAAAAAGGTATACTA : 1055837 328 : eValValGlnArgSerGlnLysProSerThrIleGluValProGlyIleLeuProV : 346 !:!!:!!||||||||||||!:!! !..!.!!|||..!:!! !||||||:!!||| rIleIleGlnArgSerGlnArgLeuGluAlaIleArgIleAsnGlyIleValProL 1055836 : TATTATACAAAGGTCTCAGAGGCTCGAAGCTATTCGAATTAATGGCATAGTTCCAA : 1055780 347 : alLeuSerLeuArgTyrPheAlaMetPheLeuSerArgThrPheSerTyrPheThr : 364 !|||||||||! !|||!:!|||||| ! !!!!! ! ! !!:!! !||| ! ysLeuSerLeuProTyrTyrAlaMetValGlyThrThrPheValAlaLeuPheLeu 1055779 : AACTATCCCTGCCATACTATGCAATGGTAGGTACTACTTTTGTTGCACTTTTTCTT : 1055726 365 : ThrLeuArgValLeuLeuAsp : 371 !:!! ! !||||||||| LeuIleSerGlnLeuLeuAsp 1055725 : CTAATCTCACAATTATTAGAC : 1055703 vulgar: gi|861722475|gb|AKO89994.1| 308 371 . KQ414618.1 1055891 1055702 - 110 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1055703 1055891 110 - . gene_id 4 ; sequence gi|861722475|gb|AKO89994.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1055703 1055891 . - . KQ414618.1 exonerate:protein2genome:local exon 1055703 1055891 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1055703 1055891 110 - . alignment_id 4 ; Query gi|861722475|gb|AKO89994.1| ; Align 1055892 309 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722459|gb|AKO89989.1| odorant receptor 25 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 324 Query range: 5 -> 233 Target range: 1058502 -> 1057735 6 : ThrProGluPheAlaIleAlaPheThrLysPheSerThrLeuValGlyThrCysTr : 24 ||||||||| ||||||:!!|||||||||.!.|||..! !||| ! !! || ThrProGluGlnAlaIleSerPheThrLysLeuSerValAlaValThrCysSerTr 1058502 : ACGCCGGAACAAGCGATCTCGTTCACGAAACTGAGCGTCGCTGTAACTTGTTCGTG : 1058448 25 : pProAsnTyrLysAsnAlaProLysTrpLysPheValLeuPheGlnIleArgTrpT : 43 |||| ! ||| !!!:! :!! !!:!!||||||.!.! !||| pProProSerProLeuAlaThrArgThrGlnValLeuLeuPheAsnThrLeuTrpS 1058447 : GCCACCGTCACCTCTGGCGACCAGAACTCAAGTTTTGCTCTTTAATACGTTGTGGA : 1058391 44 : rpLeuThrPheCysLeuSerValSerAlaPheLeuProMetCysTyrAlaAlaTyr : 61 ! !.!!||| ! !!!!:!!:!! !.!!||||||:!:! !!.! !||| erThrAlaPheValSerThrIleAlaLeuLeuLeuProLeuLeuSerGlyIleTyr 1058390 : GCACAGCATTCGTTAGCACCATCGCGCTGCTTTTGCCGCTATTGAGCGGAATTTAC : 1058337 62 : AsnHisTrpArgAsnIleLeuSerPheThrLysSerLeuPheAspAlaAlaAsnTh : 80 .!.:!! ! !:!:!! !:!!! !.!! !|||!!!:!! ! !|||:!! !.. GluTyrArgLysAspProIleIleLeuGlyLysThrValSerLeuAlaSerAlaVa 1058336 : GAGTACCGTAAAGACCCCATCATTCTTGGGAAAACAGTCAGCCTCGCCTCGGCTGT : 1058280 81 : rSerGlnThrPheIleLysMetIleLeuSerLysIleHisTyrLysArgLeuGln : 99 !:!!|||..! ||||||||||||:!!!!!:::.!!!!. ! |||!:!!!!||| lAlaGlnValAlaIleLysMetIleMetCysArgPheGlnGlnLysGlnPheGln+ 1058279 : CGCCCAGGTGGCAATCAAAATGATAATGTGCCGTTTCCAGCAGAAGCAATTCCAGg : 1058223 100 : >>>> Target Intron 1 >>>> TyrLeuLeuTyrGluMetGluAsnTyrV : 108 83 bp |||! !!:!!!:|||||||||!:! + ++ValLeuTyrPheAspMetGluAsnPheC 1058222 : t.........................agGTATTGTACTTCGACATGGAGAATTTCT : 1058113 109 : alThrAsnAlaArgGluAspGluArgGluLeuPheIleValTyrIleLysArgCys : 126 !! ! !!|||! !... |||::: :::.!. ! !|||:!: ! |||! ! ysArgTyrAlaThrSerLysGluLysValValLeuGlnArgTyrValAspArgTyr 1058112 : GCAGATACGCCACCtcgaaggaaaaagttgtcCTGCAACGATACGTGGACAGATAC : 1058059 127 : GlyLysLeuHisLeuPheValMetIlePheGlyPheMetAlaIleLeuIleIleIl : 145 ! ! !!!||| !.!! !!!::!!!:: !!|||:!:.!!! !:!!.!!:!!|| LysTyrPheHisGlyIleTyrIleLeuTrpCysPheLeuThrThrIlePheValIl 1058058 : AAATACTTTCATGGGATTTATATATTATGGTGCTTCCTCACGACCATCTTCGTCAT : 1058002 146 : eValAlaProIleGlyLeuProGlnProPheProAsnIleAlaAspTyrProPheP : 164 | !!.!|||:!: !! !|||||| !!||||||!.! !||| |||||||||! eSerGlyProLeuTyrSerProGlnThrPheProThrHisAlaIleTyrProPheG 1058001 : AAGTGGTCCATTGTACTCACCACAGACGTTCCCCACTCATGCGATATATCCTTTCC : 1057945 165 : roValAspGluSerProAlaPheGluLeuValTyrAlaHisGlnSerAlaAlaThr : 182 !|||!!:.!.!!!! ! ! ::::::||| ||||||||| !!.! ! lnValGluHisThrLeuPheLysIleValIleTyrPheHisGlnSerLeuValGly 1057944 : AAGTGGAACATACACTGTTCAagattgttatttatttccatCAGTCGTTAGTTGGT : 1057891 183 : LeuHisCysLeuSerIleProValPheAspMetGlnIleAlaLeuLeuLeuTrpTy : 201 !!!!!....! !:!! ! !!.!.!!|||! |||||||||||||||||| ! || PheGlnAlaSerAlaGlyMetAlaIleAspThrGlnIleAlaLeuLeuLeuArgTy 1057890 : TTTCAGGCGTCCGCTGGTATGGCCATCGACACTCAAATTGCTCTTCTTCTGCGATA : 1057834 202 : rSerGlyAlaArgLeuGluLeuLeuAlaArgGluPheLysThrValThrAspAsnL : 220 |:!!!.!||||||!!!|||||||||!.!!.!|||.!.::!!.!!.!!.! !:!! rAlaAlaAlaArgPheGluLeuLeuGlyAsnGluMetArgAsnAlaAsnThrHisC 1057833 : CGCGGCTGCCAGGTTCGAGCTATTGGGAAACGAGATGCGAAATGCAAATACTCACT : 1057777 221 : ysHisPheValGluCysValLysLysHisGlnTyrLeuLeu : 233 .!.||| !! |||:!!:!!||||||... ! |||||| ysGluPheAsnAlaCysIleGluLysHisSerGluLeuLeu 1057776 : GTGAATTCAATGCCTGCATAGAGAAGCACAGTGAACTTCTC : 1057736 vulgar: gi|861722459|gb|AKO89989.1| 5 233 . KQ414618.1 1058502 1057735 - 324 M 93 279 5 0 2 I 0 79 3 0 2 M 135 405 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057736 1058502 324 - . gene_id 1 ; sequence gi|861722459|gb|AKO89989.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1058224 1058502 . - . KQ414618.1 exonerate:protein2genome:local exon 1058224 1058502 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1058222 1058223 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1058141 1058223 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1058141 1058142 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1057736 1058140 . - . KQ414618.1 exonerate:protein2genome:local exon 1057736 1058140 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057736 1058502 324 - . alignment_id 1 ; Query gi|861722459|gb|AKO89989.1| ; Align 1058503 6 279 ; Align 1058141 99 405 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722459|gb|AKO89989.1| odorant receptor 25 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 123 Query range: 95 -> 233 Target range: 1062775 -> 1062361 96 : ArgLeuGlnTyrLeuLeuTyrGluMetGluAsnTyrValThrAsnAlaArgGluAs : 114 |||:!!||| |||:!! :!!:!::!! !:!|||! ! |||!.!:!!:! ArgIleGlnValLeuValGlyLysValLysAlaPheValLysValAlaAsnLysAs 1062775 : CGTATTCAGGTGTTGGTAGGAAAAGTAAAGGCGTTTGTAAAAGTGGCAAACAAGAA : 1062721 115 : pGluArgGluLeuPheIleValTyrIleLysArgCysGlyLysLeuHisLeuPheV : 133 !|||! !:!!:!!.!. !! !|||:!: ! |||! ! !::!!!! ! ! : nGluIleLysIleIleGlnGlyTyrValAspArgTyrLysArgPhePheGlyThrI 1062720 : CGAGATTAAGATAATACAAGGATACGTGGATCGATATAAACGATTTTTCGGAACAA : 1062664 134 : alMetIlePheGlyPheMetAlaIleLeuIleIleIleValAlaProIleGlyLeu : 151 !! !!: ! ! |||.!! !:!!! .!!! !:!!||||||:!: !! ! leAlaMetGlyTyrValMetThrGlyIleThrPheSerLeuAlaProLeuPheSer 1062663 : TAGCAATGGGATACGTAATGACTGGAATCACGTTCAGTTTGGCGCCTCTGTTTTCC : 1062610 152 : ProGlnProPheProAsnIleAlaAspTyrProPheProValAspGluSerProAl : 170 !||| !!!.||| !!.! !|||||| !!:!! ! ! ! !!. ValGlnGluLeuProAlaAspGlyTrpIleProPheSerIleLysProLeuGlyVa 1062609 : GTACAAGAATTGCCAGCAGACGGATGGATCCCGTTTTCCATTAAACCACTGGGAGT : 1062553 171 : aPheGluLeuValTyrAlaHisGlnSerAlaAlaThrLeuHisCysLeuSerIleP : 189 !!:! ||||||||| ! ||| ! !..!! !|||!!. !! ! ! lTyrCysLeuValTyrPheValGlnValTyrCysIleLeuGlnThrAlaPheCysI 1062552 : ATATTGCCTCGTATACTTTGTGCAGGTTTACTGCATTCTCCAAACAGCGTTCTGCA : 1062496 190 : roValPheAspMetGlnIleAlaLeuLeuLeuTrpTyrSerGlyAlaArgLeuGlu : 207 ! ! ! |||.!...!||||||||||||:!! ! !:!|||!.!|||!:!|||!!: leSerValAspPheMetIleAlaLeuLeuIleSerPheSerAlaAlaLysLeuAsp 1062495 : TTAGCGTGGATTTCATGATCGCTCTTCTAATCAGCTTCTCCGCGGCTAAATTAGAC : 1062442 208 : LeuLeuAlaArgGluPheLysThrValThrAspAsnLysHisPheValGluCysVa : 226 :!!|||!.!! !:!!.!.::!! !!.!!.!! !:!! ! .!.|||...||||| IleLeuGlyMetLysLeuArgLysAlaAsnGlyHisAspValLeuValSerCysVa 1062441 : ATACTGGGGATGAAACTGCGAAAAGCGAATGGCCACGACGTGCTGGTAAGCTGTGT : 1062385 227 : lLysLysHisGlnTyrLeuLeu : 233 ||||:!!|||||| ! :!!:!! lLysGluHisGlnGluIleIle 1062384 : CAAAGAACACCAAGAGATAATA : 1062362 vulgar: gi|861722459|gb|AKO89989.1| 95 233 . KQ414618.1 1062775 1062361 - 123 M 138 414 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1062362 1062775 123 - . gene_id 2 ; sequence gi|861722459|gb|AKO89989.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1062362 1062775 . - . KQ414618.1 exonerate:protein2genome:local exon 1062362 1062775 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1062362 1062775 123 - . alignment_id 2 ; Query gi|861722459|gb|AKO89989.1| ; Align 1062776 96 414 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722453|gb|AKO89987.1| odorant receptor 23 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 381 Query range: 2 -> 232 Target range: 1058508 -> 1057735 3 : LysIleAsnProGluPheAlaIleAlaTyrThrLysLeuThrValThrLeuValCy : 21 !..|||!..|||||| ||||||:!!!:!|||||||||!:!|||.!!:!!..!|| SerIleThrProGluGlnAlaIleSerPheThrLysLeuSerValAlaValThrCy 1058508 : AGTATAACGCCGGAACAAGCGATCTCGTTCACGAAACTGAGCGTCGCTGTAACTTG : 1058454 22 : sSerTrpProProGlyArgAsnSerSerArgLeuAspPheLeuLeuPheArgIleL : 40 |||||||||||||..!! ! :!!!!!||| !.!. !!|||||||||!.!! sSerTrpProProSerProLeuAlaThrArgThrGlnValLeuLeuPheAsnThrL 1058453 : TTCGTGGCCACCGTCACCTCTGGCGACCAGAACTCAAGTTTTGCTCTTTAATACGT : 1058397 41 : ysTrpTrpIleSerTrpLeuMetGlyIlePheLeuValIleProLeuIleTyrAla : 58 !||| ! ! !:!!!:::!!! !||| |||:!!:!:||||||:!: !!.! euTrpSerThrAlaPheValSerThrIleAlaLeuLeuLeuProLeuLeuSerGly 1058396 : TGTGGAGCACAGCATTCGTTAGCACCATCGCGCTGCTTTTGCCGCTATTGAGCGGA : 1058343 59 : AlaTyrIleAspArgArgAsnValLeuGluPheThrLysSerLeuCysLeuAlaVa : 77 !||| !!|||!:!:!! !:!! .!! !|||!!!:!! !!|||||| IleTyrGluTyrArgLysAspProIleIleLeuGlyLysThrValSerLeuAlaSe 1058342 : ATTTACGAGTACCGTAAAGACCCCATCATTCTTGGGAAAACAGTCAGCCTCGCCTC : 1058286 78 : lSerCysGlyGlnCysAlaValLysMetPhePheCysLysLeuGlnHisHisArgI : 96 !:!! !!.!||| |||:!!||||||.!..!.|||:::!!!|||!!. ! !:!. rAlaValAlaGlnValAlaIleLysMetIleMetCysArgPheGlnGlnLysGlnP 1058285 : GGCTGTCGCCCAGGTGGCAATCAAAATGATAATGTGCCGTTTCCAGCAGAAGCAAT : 1058229 97 : leLys >>>> Target Intron 1 >>>> PheLeuLeuAspGluMetGluG : 105 !!:!! 83 bp ! |||! ! !!!:||||||. heGln++ ++ValLeuTyrPheAspMetGluA 1058228 : TCCAGgt.........................agGTATTGTACTTCGACATGGAGA : 1058119 106 : luTyrValLysValAlaGluProPheGluArgGluIlePheLeuGlyTyrIleLys : 123 !.!:! !!:! !||| |||::: :::.!.! ! !!|||:!: ! snPheCysArgTyrAlaThrSerLysGluLysValValLeuGlnArgTyrValAsp 1058118 : ATTTCTGCAGATACGCCACCtcgaaggaaaaagttgtcCTGCAACGATACGTGGAC : 1058065 124 : AsnCysGlyLeuValHisValThrLeuAsnValCysSerLeuValAlaSerValGl : 142 !..! ! !! ! !!|||! !! !! !! :!!!! !!!!!!:!!.!!!!!:!! ArgTyrLysTyrPheHisGlyIleTyrIleLeuTrpCysPheLeuThrThrIlePh 1058064 : AGATACAAATACTTTCATGGGATTTATATATTATGGTGCTTCCTCACGACCATCTT : 1058008 143 : yValIleLeuGlyProLeuValLeuProGlnSerLeuProThrGluAlaLysTyrP : 161 !|||||| !||||||||| !! !||||||!!!!!!||||||.!.|||! !|||| eValIleSerGlyProLeuTyrSerProGlnThrPheProThrHisAlaIleTyrP 1058007 : CGTCATAAGTGGTCCATTGTACTCACCACAGACGTTCCCCACTCATGCGATATATC : 1057951 162 : roPheSerValGluAsnHisProAsnTyrGluIleIleTyrIleHisGlnAlaPhe : 179 |||||..!||||||:!! ! ! ! :::||||||...||||||:!!!!. roPheGlnValGluHisThrLeuPheLysIleValIleTyrPheHisGlnSerLeu 1057950 : CTTTCCAAGTGGAACATACACTGTTCAagattgttatttatttccatCAGTCGTTA : 1057897 180 : AlaGlyIleLeuCysSerSerIleGlySerIleAspCysGlnIleAlaMetLeuLe : 198 !.!|||.!!! !...|||:!! ! !:!!|||||| !|||||||||:!:||||| ValGlyPheGlnAlaSerAlaGlyMetAlaIleAspThrGlnIleAlaLeuLeuLe 1057896 : GTTGGTTTTCAGGCGTCCGCTGGTATGGCCATCGACACTCAAATTGCTCTTCTTCT : 1057840 199 : uTrpPheSerIleAlaArgLeuGluLeuLeuSerLeuGluMetLysAsnIleThrA : 217 | ! !:!:!! !||||||!!!|||||||||.!! !||||||::!||| !!.!! uArgTyrAlaAlaAlaArgPheGluLeuLeuGlyAsnGluMetArgAsnAlaAsnT 1057839 : GCGATACGCGGCTGCCAGGTTCGAGCTATTGGGAAACGAGATGCGAAATGCAAATA : 1057783 218 : snValTyrGlnPheHisAsnCysValArgLysHisGlnPheLeuLeu : 232 .! !! !:!!|||:!! !|||:!!..!||||||... |||||| hrHisCysGluPheAsnAlaCysIleGluLysHisSerGluLeuLeu 1057782 : CTCACTGTGAATTCAATGCCTGCATAGAGAAGCACAGTGAACTTCTC : 1057736 vulgar: gi|861722453|gb|AKO89987.1| 2 232 . KQ414618.1 1058508 1057735 - 381 M 95 285 5 0 2 I 0 79 3 0 2 M 135 405 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057736 1058508 381 - . gene_id 1 ; sequence gi|861722453|gb|AKO89987.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1058224 1058508 . - . KQ414618.1 exonerate:protein2genome:local exon 1058224 1058508 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1058222 1058223 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1058141 1058223 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1058141 1058142 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1057736 1058140 . - . KQ414618.1 exonerate:protein2genome:local exon 1057736 1058140 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057736 1058508 381 - . alignment_id 1 ; Query gi|861722453|gb|AKO89987.1| ; Align 1058509 3 285 ; Align 1058141 98 405 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722453|gb|AKO89987.1| odorant receptor 23 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 227 Query range: 95 -> 231 Target range: 1052956 -> 1052548 96 : IleLysPheLeuLeuAspGluMetGluGluTyrValLysValAlaGluProPheGl : 114 :!!:!! :!!:!! |||||| !|||||||||! !|||:!!! !||||| LeuGlnArgIleIleThrGluMetIleThrTyrValLysGluAlaGlnGlnPheGl 1052956 : TTACAGCGAATAATTACAGAAATGATCACGTACGTCAAAGAGGCGCAGCAATTCGA : 1052902 115 : uArgGluIlePheLeuGlyTyrIleLysAsnCysGlyLeuValHisValThrLeuA : 133 ||||||||||.!!! !..!||||||:!!!!.||| !||| !!:!!! ! !! ! uArgGluIleLeuHisAsnTyrIleGlnLysCysLysLeuPheTyrGlyGlySerL 1052901 : AAGGGAAATTCTCCACAACTATATCCAAAAATGCAAACTTTTTTACGGTGGTTCGT : 1052845 134 : snValCysSerLeuValAlaSerValGlyValIleLeuGlyProLeuValLeuPro : 151 :!!!! !!!! !:!!..!:!!..! !! !!:!!|||||||||:!!||||||||| euIleTrpThrTyrLeuCysAlaThrCysPheValLeuGlyProValValLeuPro 1052844 : TAATTTGGACATACCTCTGTGCAACTTGTTTCGTATTAGGACCCGTTGTTCTACCA : 1052791 152 : GlnSerLeuProThrGluAlaLysTyrProPheSerValGluAsnHisProAsnTy : 170 .!. !!!!!|||!:!...|||:!!||||||||| !!|||.!...! |||! ! AsnProPheProSerSerAlaGluTyrProPheArgValAsnArgThrProMetAs 1052790 : AATCCTTTTCCCAGCAGTGCAGAGTATCCGTTTCGCGTTAATCGTACACCCATGAA : 1052734 171 : rGluIleIleTyrIleHisGlnAlaPheAlaGlyIleLeuCysSerSerIleGlyS : 189 !! |||:!!|||:!:||||||:!!||| !.!!.!!! !! !|||:!! ! !! nAlaIleValTyrLeuHisGlnSerPheIleSerPheGlnTyrSerAlaHisIleC 1052733 : TGCTATTGTCTACCTGCACCAATCTTTCATAAGCTTTCAGTACAGTGCACACATAT : 1052677 190 : erIleAspCysGlnIleAlaMetLeuLeuTrpPheSerIleAlaArgLeuGluLeu : 207 !!:!!..! ! !|||:!:|||||||||.!!!!! !||||||!!!.!.! ! ysValSerIlePheGlyAlaLeuLeuLeuTrpIleThrAlaAlaArgPheHisCys 1052676 : GTGTAAGCATTTTCGGAGCTCTTTTACTCTGGATTACGGCTGCGAGATTTCATTGC : 1052623 208 : LeuSerLeuGluMetLysAsnIleThrAsnValTyrGlnPheHisAsnCysValAr : 226 |||!!!||||||:!::!!.!.! !:!!!:!:!!:!!..!!!. !! !||||||!: LeuThrLeuGluValGlnGlnSerSerSerIleHisMetLeuIleIleCysValLy 1052622 : TTAACTCTGGAGGTTCAACAAAGTTCAAGTATTCATATGTTAATCATCTGTGTTAA : 1052566 227 : gLysHisGlnPheLeu : 231 !|||!!.! !.!.||| sLysGlnLeuLeuLeu 1052565 : GAAACAGCTACTACTG : 1052549 vulgar: gi|861722453|gb|AKO89987.1| 95 231 . KQ414618.1 1052956 1052548 - 227 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1052549 1052956 227 - . gene_id 2 ; sequence gi|861722453|gb|AKO89987.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1052549 1052956 . - . KQ414618.1 exonerate:protein2genome:local exon 1052549 1052956 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1052549 1052956 227 - . alignment_id 2 ; Query gi|861722453|gb|AKO89987.1| ; Align 1052957 96 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722453|gb|AKO89987.1| odorant receptor 23 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 307 -> 373 Target range: 1055891 -> 1055693 308 : IleTyrAsnSerGluTrpIleArgAsnSerLysGluLeuAsnLysGlyIleGluPh : 326 |||||||||!!!!!:|||.!!..!!!...!! ..!|||.!.||| !:!! ! !: IleTyrAsnThrAspTrpPheGluLysAspIleArgLeuGlnLysLysValTyrTy 1055891 : ATTTACAACACAGATTGGTTCGAAAAGGATATTAGATTGCAAAAAAAGGTATACTA : 1055837 327 : eValIleGlnArgSerAsnLysProAlaValIleTyrIleSerGlyIlePheProA : 345 !:!!||||||||||||.!.!:!! !! !!.!||| |||!:!|||||| !!||| rIleIleGlnArgSerGlnArgLeuGluAlaIleArgIleAsnGlyIleValProL 1055836 : TATTATACAAAGGTCTCAGAGGCTCGAAGCTATTCGAATTAATGGCATAGTTCCAA : 1055780 346 : laIleSerLeuAsnTyrTyrAlaThrPheLeuSerLysThrPheSerTyrPheThr : 363 !:!!|||||| |||||||||! ! ! !!!!! ! !!:!! !||| ! ysLeuSerLeuProTyrTyrAlaMetValGlyThrThrPheValAlaLeuPheLeu 1055779 : AACTATCCCTGCCATACTATGCAATGGTAGGTACTACTTTTGTTGCACTTTTTCTT : 1055726 364 : ThrPheArgIleIleLeuAlaLysLeuGlu : 373 !.!! ! !:!!|||! ! ! |||||| LeuIleSerGlnLeuLeuAspTyrLeuGlu 1055725 : CTAATCTCACAATTATTAGACTATCTTGAG : 1055694 vulgar: gi|861722453|gb|AKO89987.1| 307 373 . KQ414618.1 1055891 1055693 - 108 M 66 198 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1055694 1055891 108 - . gene_id 3 ; sequence gi|861722453|gb|AKO89987.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1055694 1055891 . - . KQ414618.1 exonerate:protein2genome:local exon 1055694 1055891 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1055694 1055891 108 - . alignment_id 3 ; Query gi|861722453|gb|AKO89987.1| ; Align 1055892 308 198 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722453|gb|AKO89987.1| odorant receptor 23 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 4 -> 100 Target range: 1039169 -> 1038881 5 : AsnProGluPheAlaIleAlaTyrThrLysLeuThrValThrLeuValCysSerTr : 23 !:!|||||| ||||||:!! !..!:!!:!!! !..!.!!!!!..!|||!!!|| SerProGluArgAlaIleSerLeuValGlnValIleThrAlaPheThrCysCysTr 1039169 : AGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGCTTTTACCTGCTGTTG : 1039115 24 : pProProGlyArgAsnSerSerArgLeuAspPheLeuLeuPheArgIleLysTrpT : 42 ||||! ! ! !!..:!!!!!!:!! ! ! |||! !|||!:!||| ! ! ! pProLeuProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuArgS 1039114 : GCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGAGAT : 1039058 43 : rpIleSerTrpLeuMetGlyIlePheLeuValIleProLeuIleTyrAlaAlaTyr : 60 .!! ! |||! !.!:!! ! ||| !!:!!||||||:!!|||||| !:!! erPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHis 1039057 : CTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCAC : 1039004 61 : IleAspArgArgAsnValLeuGluPheThrLysSerLeuCysLeuAlaValSerCy : 79 :!: !!|||!.!:!!!.! !.!. !!.!!|||:!! !||||||.!!:!!:!! ValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLe 1039003 : GTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCTct : 1038947 80 : sGlyGlnCysAlaValLysMetPhePheCysLysLeuGlnHisHisArgIleLysP : 98 ||| ::: ||| |||! !|||:!! !!!.!.!!:!! uValGlnIlePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGlnV 1038946 : cgtgcaaatatttttccaaactttcgttTGCATCGGTCAATACGATCATTTTCAGG : 1038890 99 : heLeuLeu : 100 ! !||| alArgLeu 1038889 : TAAGATTA : 1038882 vulgar: gi|861722453|gb|AKO89987.1| 4 100 . KQ414618.1 1039169 1038881 - 107 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1038882 1039169 107 - . gene_id 4 ; sequence gi|861722453|gb|AKO89987.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1038882 1039169 . - . KQ414618.1 exonerate:protein2genome:local exon 1038882 1039169 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1038882 1039169 107 - . alignment_id 4 ; Query gi|861722453|gb|AKO89987.1| ; Align 1039170 5 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722453|gb|AKO89987.1| odorant receptor 23 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 4 -> 100 Target range: 1030002 -> 1029714 5 : AsnProGluPheAlaIleAlaTyrThrLysLeuThrValThrLeuValCysSerTr : 23 !:!|||||| ||||||:!! !..!:!!:!!! !..!.!!!!!..!|||!!!|| SerProGluArgAlaIleSerLeuValGlnValIleThrAlaPheThrCysCysTr 1030002 : AGTCCAGAAAGAGCCATCTCCCTTGTCCAAGTTATCACAGCTTTTACCTGCTGTTG : 1029948 24 : pProProGlyArgAsnSerSerArgLeuAspPheLeuLeuPheArgIleLysTrpT : 42 ||||! ! ! !!..:!!!!!!:!! ! ! |||! !|||!:!||| ! ! ! pProLeuProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuArgS 1029947 : GCCTCTTCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGAGAT : 1029891 43 : rpIleSerTrpLeuMetGlyIlePheLeuValIleProLeuIleTyrAlaAlaTyr : 60 .!! ! |||! !.!:!! ! ||| !!:!!||||||:!!|||||| !:!! erPheLeuLeuLeuAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHis 1029890 : CTTTCCTGCTTTTAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCAC : 1029837 61 : IleAspArgArgAsnValLeuGluPheThrLysSerLeuCysLeuAlaValSerCy : 79 :!: !!|||!.!:!!!.! !.!. !!.!!|||:!! !||||||.!!:!!:!! ValHisArgAsnAspAlaGluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLe 1029836 : GTGCATCGAAACGACGCCGAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCct : 1029780 80 : sGlyGlnCysAlaValLysMetPhePheCysLysLeuGlnHisHisArgIleLysP : 98 ||| ::: ||| !!|||! !|||:!! !!!.!.!!:!! uValGlnIlePhePheGlnThrPheValCysIleGlyGlnTyrAspHisPheGlnV 1029779 : cgtgcaaatatttttccagacTTTCGTTTGCATCGGCCAATACGATCATTTTCAGG : 1029723 99 : heLeuLeu : 100 ! !||| alArgLeu 1029722 : TAAGATTA : 1029715 vulgar: gi|861722453|gb|AKO89987.1| 4 100 . KQ414618.1 1030002 1029714 - 107 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1029715 1030002 107 - . gene_id 5 ; sequence gi|861722453|gb|AKO89987.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1029715 1030002 . - . KQ414618.1 exonerate:protein2genome:local exon 1029715 1030002 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1029715 1030002 107 - . alignment_id 5 ; Query gi|861722453|gb|AKO89987.1| ; Align 1030003 5 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722478|gb|AKO89995.1| odorant receptor 31 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 355 Query range: 5 -> 233 Target range: 1058502 -> 1057735 6 : ThrProGluPheAlaIleAlaPheThrLysLeuThrSerIleLeuGlySerSerTr : 24 ||||||||| ||||||:!!||||||||||||!:! ! !:!! !!!!||||| ThrProGluGlnAlaIleSerPheThrLysLeuSerValAlaValThrCysSerTr 1058502 : ACGCCGGAACAAGCGATCTCGTTCACGAAACTGAGCGTCGCTGTAACTTGTTCGTG : 1058448 25 : pProHisTyrLysAsnAlaThrLysCysGlnLeuIleValPheAsnIleLysTrpT : 43 ||||! ! ||||||!:! !|||:!!:!::!!||||||! !||| pProProSerProLeuAlaThrArgThrGlnValLeuLeuPheAsnThrLeuTrpS 1058447 : GCCACCGTCACCTCTGGCGACCAGAACTCAAGTTTTGCTCTTTAATACGTTGTGGA : 1058391 44 : rpPhePheTrpPheMetSerIleThrAlaPheLeuProMetCysTyrAlaAlaTyr : 61 ! !:: !!! !!!|||.!! !.!!||||||:!:! !!.! !||| erThrAlaPheValSerThrIleAlaLeuLeuLeuProLeuLeuSerGlyIleTyr 1058390 : GCACAGCATTCGTTAGCACCATCGCGCTGCTTTTGCCGCTATTGAGCGGAATTTAC : 1058337 62 : AsnAsnThrLysAsnIleLeuSerPheThrLysSerLeuCysAspAlaAlaAsnCy : 80 .!. !! !|||:!! !:!!! !.!! !|||!!!:!! !! !|||:!! ! GluTyrArgLysAspProIleIleLeuGlyLysThrValSerLeuAlaSerAlaVa 1058336 : GAGTACCGTAAAGACCCCATCATTCTTGGGAAAACAGTCAGCCTCGCCTCGGCTGT : 1058280 81 : sSerGlnAlaPheIleLysMetLeuLeuCysLysIleHisTyrArgLysLeuGln : 99 !:!!|||!.! |||||||||:!!:!!|||:::.!!!!. ! !:!:!!!!!||| lAlaGlnValAlaIleLysMetIleMetCysArgPheGlnGlnLysGlnPheGln+ 1058279 : CGCCCAGGTGGCAATCAAAATGATAATGTGCCGTTTCCAGCAGAAGCAATTCCAGg : 1058223 100 : >>>> Target Intron 1 >>>> PheLeuPheTyrGluMetGluLysTyrV : 108 83 bp ! |||!:!!:!!!:||||||!!.!:! + ++ValLeuTyrPheAspMetGluAsnPheC 1058222 : t.........................agGTATTGTACTTCGACATGGAGAATTTCT : 1058113 109 : alGluGlnAlaArgAlaAsnGluArgGluLeuPheIleSerTyrIleLysArgCys : 126 !..! ! |||! !:::...|||::: :::.!. ! !!|||:!: ! |||! ! ysArgTyrAlaThrSerLysGluLysValValLeuGlnArgTyrValAspArgTyr 1058112 : GCAGATACGCCACCtcgaaggaaaaagttgtcCTGCAACGATACGTGGACAGATAC : 1058059 127 : GlyArgLeuHisValSerIleMetIleSerAlaValMetAlaAlaValIleIleIl : 145 ! !!!!|||! !! ! !!!::!!!!!..! !!:!:.!!.!!:!!.!!:!!|| LysTyrPheHisGlyIleTyrIleLeuTrpCysPheLeuThrThrIlePheValIl 1058058 : AAATACTTTCATGGGATTTATATATTATGGTGCTTCCTCACGACCATCTTCGTCAT : 1058002 146 : eIleAlaProIleGlyMetProGlnProPheProAsnValAlaGluTyrProPheP : 164 |! !!.!|||:!: ! |||||| !!||||||!.! !||| !|||||||||! eSerGlyProLeuTyrSerProGlnThrPheProThrHisAlaIleTyrProPheG 1058001 : AAGTGGTCCATTGTACTCACCACAGACGTTCCCCACTCATGCGATATATCCTTTCC : 1057945 165 : roValAspGlyHisProThrPheGluIleIleTyrLeuGlnGlnSerIleAlaThr : 182 !|||!!: ! ! ! ! :::||||||......||||||:!!!.! ! lnValGluHisThrLeuPheLysIleValIleTyrPheHisGlnSerLeuValGly 1057944 : AAGTGGAACATACACTGTTCAagattgttatttatttccatCAGTCGTTAGTTGGT : 1057891 183 : IleHisCysMetSerIleProValPheAspCysGlnIleAlaLeuLeuLeuTrpTy : 201 .!!!!.... :!! ! !!.!.!!||| !|||||||||||||||||| ! || PheGlnAlaSerAlaGlyMetAlaIleAspThrGlnIleAlaLeuLeuLeuArgTy 1057890 : TTTCAGGCGTCCGCTGGTATGGCCATCGACACTCAAATTGCTCTTCTTCTGCGATA : 1057834 202 : rAlaGlyAlaArgLeuGluLeuLeuGlyAspGluPheArgLysValThrAspAsnG : 220 ||||!.!||||||!!!||||||||||||:!!|||.!.|||!!.!.!!.! !:!! rAlaAlaAlaArgPheGluLeuLeuGlyAsnGluMetArgAsnAlaAsnThrHisC 1057833 : CGCGGCTGCCAGGTTCGAGCTATTGGGAAACGAGATGCGAAATGCAAATACTCACT : 1057777 221 : lnGlnPheValAlaCysValLysLysHisGlnTyrLeuLeu : 233 :!!||| !||||||:!!:!!||||||... ! |||||| ysGluPheAsnAlaCysIleGluLysHisSerGluLeuLeu 1057776 : GTGAATTCAATGCCTGCATAGAGAAGCACAGTGAACTTCTC : 1057736 vulgar: gi|861722478|gb|AKO89995.1| 5 233 . KQ414618.1 1058502 1057735 - 355 M 93 279 5 0 2 I 0 79 3 0 2 M 135 405 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057736 1058502 355 - . gene_id 1 ; sequence gi|861722478|gb|AKO89995.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1058224 1058502 . - . KQ414618.1 exonerate:protein2genome:local exon 1058224 1058502 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1058222 1058223 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1058141 1058223 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1058141 1058142 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1057736 1058140 . - . KQ414618.1 exonerate:protein2genome:local exon 1057736 1058140 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057736 1058502 355 - . alignment_id 1 ; Query gi|861722478|gb|AKO89995.1| ; Align 1058503 6 279 ; Align 1058141 99 405 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722478|gb|AKO89995.1| odorant receptor 31 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 161 Query range: 95 -> 233 Target range: 1062775 -> 1062361 96 : LysLeuGlnPheLeuPheTyrGluMetGluLysTyrValGluGlnAlaArgAlaAs : 114 ::::!!||| ! ||| ! :!!:!::!! !!:!|||:!! !|||!.! !|| ArgIleGlnValLeuValGlyLysValLysAlaPheValLysValAlaAsnLysAs 1062775 : CGTATTCAGGTGTTGGTAGGAAAAGTAAAGGCGTTTGTAAAAGTGGCAAACAAGAA : 1062721 115 : nGluArgGluLeuPheIleSerTyrIleLysArgCysGlyArgLeuHisValSerI : 133 ||||! !:!!:!!.!. !.!!|||:!: ! |||! ! !|||!!! !! !!!!| nGluIleLysIleIleGlnGlyTyrValAspArgTyrLysArgPhePheGlyThrI 1062720 : CGAGATTAAGATAATACAAGGATACGTGGATCGATATAAACGATTTTTCGGAACAA : 1062664 134 : leMetIleSerAlaValMetAlaAlaValIleIleIleIleAlaProIleGlyMet : 151 || !!:.!! !||||||.!!!.!:!!! .!!! !:!:||||||:!: ! leAlaMetGlyTyrValMetThrGlyIleThrPheSerLeuAlaProLeuPheSer 1062663 : TAGCAATGGGATACGTAATGACTGGAATCACGTTCAGTTTGGCGCCTCTGTTTTCC : 1062610 152 : ProGlnProPheProAsnValAlaGluTyrProPheProValAspGlyHisProTh : 170 !||| !!!.||| ! !!.! ! !|||||| !!:!! ! !! !.. ValGlnGluLeuProAlaAspGlyTrpIleProPheSerIleLysProLeuGlyVa 1062609 : GTACAAGAATTGCCAGCAGACGGATGGATCCCGTTTTCCATTAAACCACTGGGAGT : 1062553 171 : rPheGluIleIleTyrLeuGlnGlnSerIleAlaThrIleHisCysMetSerIleP : 189 !!:! :!!:!!|||!!! !||| ! !..!! !:!!!!. !! ! ! lTyrCysLeuValTyrPheValGlnValTyrCysIleLeuGlnThrAlaPheCysI 1062552 : ATATTGCCTCGTATACTTTGTGCAGGTTTACTGCATTCTCCAAACAGCGTTCTGCA : 1062496 190 : roValPheAspCysGlnIleAlaLeuLeuLeuTrpTyrAlaGlyAlaArgLeuGlu : 207 ! ! ! |||! !..!||||||||||||:!! ! !:!:!!!.!|||!:!|||!!: leSerValAspPheMetIleAlaLeuLeuIleSerPheSerAlaAlaLysLeuAsp 1062495 : TTAGCGTGGATTTCATGATCGCTCTTCTAATCAGCTTCTCCGCGGCTAAATTAGAC : 1062442 208 : LeuLeuGlyAspGluPheArgLysValThrAspAsnGlnGlnPheValAlaCysVa : 226 :!!|||||| :!!.!.||||||!.!!.!! !:!!.!. !.!.|||::!||||| IleLeuGlyMetLysLeuArgLysAlaAsnGlyHisAspValLeuValSerCysVa 1062441 : ATACTGGGGATGAAACTGCGAAAAGCGAATGGCCACGACGTGCTGGTAAGCTGTGT : 1062385 227 : lLysLysHisGlnTyrLeuLeu : 233 ||||:!!|||||| ! :!!:!! lLysGluHisGlnGluIleIle 1062384 : CAAAGAACACCAAGAGATAATA : 1062362 vulgar: gi|861722478|gb|AKO89995.1| 95 233 . KQ414618.1 1062775 1062361 - 161 M 138 414 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1062362 1062775 161 - . gene_id 2 ; sequence gi|861722478|gb|AKO89995.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1062362 1062775 . - . KQ414618.1 exonerate:protein2genome:local exon 1062362 1062775 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1062362 1062775 161 - . alignment_id 2 ; Query gi|861722478|gb|AKO89995.1| ; Align 1062776 96 414 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722478|gb|AKO89995.1| odorant receptor 31 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 118 Query range: 303 -> 375 Target range: 1055906 -> 1055690 304 : AsnValGlyAlaAlaLeuTyrCysSerThrTrpIleLysAsnSerLysGluSerAs : 322 !!.:!!!.!|||! !:!!||| !!!! !|||.!!:!!!!...!! ..!! !.! LysLeuAlaAlaAspIleTyrAsnThrAspTrpPheGluLysAspIleArgLeuGl 1055906 : AAGCTTGCGGCAGATATTTACAACACAGATTGGTTCGAAAAGGATATTAGATTGCA : 1055852 323 : nLysAsnIlePheIleValIleGlnArgSerGlnLysProGluThrIleGlnValP : 341 .|||!!.:!!!:! !:!!|||||||||||||||!:!! !|||.!!|||!:!:!! nLysLysValTyrTyrIleIleGlnArgSerGlnArgLeuGluAlaIleArgIleA 1055851 : AAAAAAGGTATACTATATTATACAAAGGTCTCAGAGGCTCGAAGCTATTCGAATTA : 1055795 342 : roGlyIleLeuProIleLeuSerLeuThrTyrTyrAlaThrPheLeuSerLysThr : 359 !||||||:!!|||! !||||||||| !!|||||||||! ! ! !!!!! ! snGlyIleValProLysLeuSerLeuProTyrTyrAlaMetValGlyThrThrPhe 1055794 : ATGGCATAGTTCCAAAACTATCCCTGCCATACTATGCAATGGTAGGTACTACTTTT : 1055741 360 : PheSerTyrPheThrThrLeuArgValValLeuAspLysMetGluAsp : 375 !!:!! !||| ! !:!! ! !:!!|||||| ! :!:|||!!: ValAlaLeuPheLeuLeuIleSerGlnLeuLeuAspTyrLeuGluGlu 1055740 : GTTGCACTTTTTCTTCTAATCTCACAATTATTAGACTATCTTGAGGAA : 1055691 vulgar: gi|861722478|gb|AKO89995.1| 303 375 . KQ414618.1 1055906 1055690 - 118 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1055691 1055906 118 - . gene_id 3 ; sequence gi|861722478|gb|AKO89995.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1055691 1055906 . - . KQ414618.1 exonerate:protein2genome:local exon 1055691 1055906 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1055691 1055906 118 - . alignment_id 3 ; Query gi|861722478|gb|AKO89995.1| ; Align 1055907 304 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722444|gb|AKO89984.1| odorant receptor 20 [Microplitis mediator] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 301 -> 366 Target range: 3180475 -> 3180670 302 : LeuAsnAlaCysPheSerSerCysMetLeuMetGlnLeuPheAlaSerPheSerMe : 320 :!!|||! ! !!.!...! ! |||!!! |||!!!|||!.!||||||! !:! MetAsnAspSerLeuGlnLeuThrMetPheAlaGlnPhePheGlySerPheMetVa 3180476 : ATGAACGACAGTCTACAGCTGACGATGTTCGCCCAGTTTTTCGGAAGCTTTATGGT : 3180530 321 : tIleCysLeuThrGlyPheGlnAlaValLeuGlyAlaThrThrLysThrSerLeuI : 339 !|||||||||!:! !.!!||| !:!! !!.!! !! ! !!..|||..!!!!: lIleCysLeuSerLeuIleGlnLeuLeuAsnAlaAspIleLeuSerThrGluPheL 3180531 : GATCTGCCTGAGCCTGATTCAGTTGTTAAACGCAGATATTCTCAGCACCGAATTCT : 3180587 340 : leLysPheValLeuTyrLeuGlyAlaAlaPheSerGlnLeuLeuTyrTrpCysTrp : 357 !! ! :::...||||||...::: !.!. !||| !!!! !!::|||||| euAlaThrIlePheTyrLeuSerSerIleLeuLeuGlnSerPheLeuTyrCysTrp 3180588 : TAGCGACGAtattttatctgagctcgatACTGCTGCAGAGCTTTCTTTACTGTTGG : 3180641 358 : PheGlyAsnGluLeuLeuTyrGluVal : 366 !:!|||||||||:!! ! :!!||| TyrGlyAsnGluValArgThrLysVal 3180642 : TACGGAAACGAAGTGAGAACGAAGGTT : 3180670 vulgar: gi|861722444|gb|AKO89984.1| 301 366 . KQ414646.1 3180475 3180670 + 101 M 65 195 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3180476 3180670 101 + . gene_id 1 ; sequence gi|861722444|gb|AKO89984.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3180476 3180670 . + . KQ414646.1 exonerate:protein2genome:local exon 3180476 3180670 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3180476 3180670 101 + . alignment_id 1 ; Query gi|861722444|gb|AKO89984.1| ; Align 3180476 302 195 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722438|gb|AKO89982.1| odorant receptor 18 [Microplitis mediator] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 168 Query range: 251 -> 327 Target range: 3178375 -> 3178603 252 : IleIleLeuLysLeuAlaAspThrIleAsnLysThrPheAspLysValIleLeuLe : 270 ...||| :::!!!.!!.!.|||:!:|||! ..!|||.!. ! :!!|||!!!|| PheIleCysArgPheThrGlnThrValAsnThrValPheGlnTyrMetIlePheLe 3178376 : ttcatttgtagaTTTACACAGACGGTGAACACTGTGTTCCAGTACATGATTTTCCT : 3178430 271 : uGlnPhePheIleSerSerIleValLeuCysIleSerValTyrAsnLeuAlaPheL : 289 |||||||! !|||||||||! |||||||||:!:|||:!!|||!!.:!!:!! : uGlnPheSerIleSerSerThrValLeuCysLeuSerIleTyrLysMetSerThrI 3178431 : GCAATTTTCCATCAGTTCGACGGTGCTGTGTTTGAGCATCTATAAAATGTCGACGA : 3178487 290 : euAspValPheThrThrGluPheThrSerIleIleLeuTyrLeuCysCysMetLeu : 307 !!:!! !|||!:!! !.!.|||..!!!! ! !! !|||||||||||||||||| leAsnProPheSerMetAsnPheValTrpCysAlaSerTyrLeuCysCysMetLeu 3178488 : TTAATCCATTTAGCATGAACTTCGTCTGGTGCGCCTCCTATTTATGCTGTATGCTC : 3178541 308 : MetGluIlePheIleLeuCysAlaAlaGlyAsnGlnValThrIleValSerSerTh : 326 ! !:!!:!:!:!:!!! !||| ! !||||||:!!||||||:!: ! !.!!|| ThrGlnValTyrLeuTyrCysTrpPheGlyAsnGluValThrLeuLysValGlyTh 3178542 : ACGCAGGTGTATTTATACTGTTGGTTCGGGAACGAGGTGACGTTGAAGGTTGGCAC : 3178598 327 : rLeu : 327 |:!! rVal 3178599 : CGTG : 3178603 vulgar: gi|861722438|gb|AKO89982.1| 251 327 . KQ414646.1 3178375 3178603 + 168 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3178376 3178603 168 + . gene_id 1 ; sequence gi|861722438|gb|AKO89982.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3178376 3178603 . + . KQ414646.1 exonerate:protein2genome:local exon 3178376 3178603 . + . insertions 0 ; deletions 0 KQ414646.1 exonerate:protein2genome:local similarity 3178376 3178603 168 + . alignment_id 1 ; Query gi|861722438|gb|AKO89982.1| ; Align 3178376 252 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722438|gb|AKO89982.1| odorant receptor 18 [Microplitis mediator] Target: KQ414646.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold57, whole genome shotgun sequence Model: protein2genome:local Raw score: 126 Query range: 2 -> 122 Target range: 3149026 -> 3149383 3 : SerIleLeuProGlySerPheValValLeuGlnAlaIleGlyLeuTrpLysProPr : 21 :!!||||||! ! !:!!||| !:!!||| ! ! !|||! !|||!:!||| AlaIleLeuArgProAlaPheAsnIleLeuThrIleCysGlyCysTrpArgProCy 3149027 : GCTATCTTACGGCCAGCTTTCAACATACTGACGATCTGCGGATGCTGGAGGCCGTG : 3149081 22 : oGluTyrAsnAsnSerProIleLeuAsnTyrTyrTyrArgLeuArgThrPheIleT : 40 !..!! !...!..!!!! ! !!!. ! |||! !:!! !|||.!..!!. sSerCysArgThrThrArg---AlaLysAlaAlaTyrIleValTyrThrMetPheV 3149082 : CTCGTGCCGAACGACACGC---GCCAAGGCCGCGTACATCGTTTACACGATGTTCG : 3149135 41 : hrPhePheLeuIleTyrSerPheThrIleThrGlyIleThrGlyLeuIleLeuThr : 58 .! ! .!!|||:!::!!|||||| !|||::: ... ...:::||||||!.! alValLeuLeuLeuHisSerPheCysIleSerGlnPhePheAsnValIleLeuAsn 3149136 : TGGTACTTTTATTGCACAGCTTCTGCATctcgcaatttttcaacgtgatACTGAAC : 3149189 59 : ThrLysAspIleAlaAspValThrSerAspCysPheIleLeuLeuSerIlePheAl : 77 !!:! ! !!!::!!!:!..!..!! !!:!!!:!!!:!!:!! ! !! LeuArgThrAlaAspGluLeuSerGluSerPheTyrMetPheIleAlaSerValLe 3149190 : TTGAGAACGGCGGACGAGCTGAGCGAGAGTTTCTACATGTTCATCGCGTCCGTTCT : 3149246 78 : aIleCysGlyLysIleAlaAsnIleIleTrpSerArgAsnGluIleIleTrpIleI : 96 ! !||| !!||||||!.!!..:!::!: !!:!!.!......||| :!! uSerCysCysLysIleValThrLeuLeuThrAsnHisGlySerIleGluIleLeuA 3149247 : GTCCTGCTGCAAGATCGTCACGCTGCTGACGAACCACGGAAGCATCGAGATCCTCC : 3149303 97 : leAspThrLeuAsnSerGluProCysLysProLeuAsnAsnAspGluIleIleIle : 114 ! !|||.!...!|||||||||||||||:!!!:! !!!:||| !:!!||| rgArgArgLeuGluGluGluProCysLysProValSerAlaGluGluAlaValIle 3149304 : GGAGGAGACTGGAGGAGGAGCCGTGTAAACCTGTGAGCGCCGAGGAGGCTGTCATA : 3149357 115 : GlnGlnLysValAspArgLeuIle : 122 |||...||| !!|||||| !||| GlnSerLysPheAspArgAsnIle 3149358 : CAGAGTAAATTCGACAGAAACATC : 3149383 vulgar: gi|861722438|gb|AKO89982.1| 2 122 . KQ414646.1 3149026 3149383 + 126 M 25 75 G 1 0 M 94 282 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414646.1 exonerate:protein2genome:local gene 3149027 3149383 126 + . gene_id 2 ; sequence gi|861722438|gb|AKO89982.1| ; gene_orientation . KQ414646.1 exonerate:protein2genome:local cds 3149027 3149383 . + . KQ414646.1 exonerate:protein2genome:local exon 3149027 3149383 . + . insertions 0 ; deletions 1 KQ414646.1 exonerate:protein2genome:local similarity 3149027 3149383 126 + . alignment_id 2 ; Query gi|861722438|gb|AKO89982.1| ; Align 3149027 3 75 ; Align 3149102 29 282 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722462|gb|AKO89990.1| odorant receptor 26 [Microplitis mediator] Target: KQ414667.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold102, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 104 Query range: 352 -> 393 Target range: 801737 -> 801463 353 : LeuIleIleMetThrMetArgCysGlnValProCysLysLeuThrAlaAlaLysIleM : 372 ||| ||||||! !||||||! ::!:!!|||||||||:!!||||||||||||.!! LeuGlnIleMetMetMetArgSerArgIleProCysLysIleThrAlaAlaLysPheT 801737 : CTTCAGATCATGATGATGCGCTCGAGGATACCATGCAAGATAACCGCCGCTAAATTCT : 801680 373 : etAspLeuThrIleGluAsnPheGlyMet >>>> Target Intron 1 >>>> : 382 ..!:!!:!!:!:|||!:!|||..!! ! 151 bp yrSerMetSerLeuGluSerPheSerLys++ ++ 801679 : ACAGCATGTCCTTGGAGAGCTTCTCGAAGgt.........................ag : 801501 383 : MetValLysThrSerGlySerTyrPheThrMetLeu : 393 :!::!!!..|||||| !||||||||||||:!:||| ValLeuSerThrSerPheSerTyrPheThrValLeu 801500 : GTACTCAGCACGTCTTTCTCCTACTTCACGGTCCTC : 801464 vulgar: gi|861722462|gb|AKO89990.1| 352 393 . KQ414667.1 801737 801463 - 104 M 29 87 5 0 2 I 0 147 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414667.1 exonerate:protein2genome:local gene 801464 801737 104 - . gene_id 1 ; sequence gi|861722462|gb|AKO89990.1| ; gene_orientation + KQ414667.1 exonerate:protein2genome:local cds 801651 801737 . - . KQ414667.1 exonerate:protein2genome:local exon 801651 801737 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 801649 801650 . - . intron_id 1 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801500 801650 . - . intron_id 1 KQ414667.1 exonerate:protein2genome:local splice3 801500 801501 . - . intron_id 0 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801464 801499 . - . KQ414667.1 exonerate:protein2genome:local exon 801464 801499 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local similarity 801464 801737 104 - . alignment_id 1 ; Query gi|861722462|gb|AKO89990.1| ; Align 801738 353 87 ; Align 801500 382 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722447|gb|AKO89985.1| odorant receptor 21 [Microplitis mediator] Target: KQ414667.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold102, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 143 Query range: 340 -> 388 Target range: 801758 -> 801463 341 : GlySerLysSerLysAsnLeuLeuHisMetMetIleMetArgSerArgIleProCysL : 360 ||||||:::! !....!. !|||!!.!!:|||!!:|||||||||||||||||||||| GlySerArgPheSerGlnSerLeuGlnIleMetMetMetArgSerArgIleProCysL 801758 : GGTAGTCGTTTCTCTCAGAGTCTTCAGATCATGATGATGCGCTCGAGGATACCATGCA : 801701 361 : ysLeuThrAlaGlyLysIleTyrLeuMetSerLeuGluAsnPheThrGly >>>> T : 377 ||:!!||||||!.!|||.!!||| !||||||||||||!:!|||:!! ! ysIleThrAlaAlaLysPheTyrSerMetSerLeuGluSerPheSerLys++ 801700 : AGATAACCGCCGCTAAATTCTACAGCATGTCCTTGGAGAGCTTCTCGAAGgt...... : 801648 378 : arget Intron 1 >>>> ValValLysThrSerMetSerTyrPheThrValLeu : 388 151 bp |||:!!!..||||||.!.|||||||||||||||||| ++ValLeuSerThrSerPheSerTyrPheThrValLeu 801647 : ...................agGTACTCAGCACGTCTTTCTCCTACTTCACGGTCCTC : 801464 vulgar: gi|861722447|gb|AKO89985.1| 340 388 . KQ414667.1 801758 801463 - 143 M 36 108 5 0 2 I 0 147 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414667.1 exonerate:protein2genome:local gene 801464 801758 143 - . gene_id 1 ; sequence gi|861722447|gb|AKO89985.1| ; gene_orientation + KQ414667.1 exonerate:protein2genome:local cds 801651 801758 . - . KQ414667.1 exonerate:protein2genome:local exon 801651 801758 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 801649 801650 . - . intron_id 1 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801500 801650 . - . intron_id 1 KQ414667.1 exonerate:protein2genome:local splice3 801500 801501 . - . intron_id 0 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801464 801499 . - . KQ414667.1 exonerate:protein2genome:local exon 801464 801499 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local similarity 801464 801758 143 - . alignment_id 1 ; Query gi|861722447|gb|AKO89985.1| ; Align 801759 341 108 ; Align 801500 377 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722481|gb|AKO89996.1| odorant receptor 32 [Microplitis mediator] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 140 Query range: 318 -> 405 Target range: 1394868 -> 1395482 319 : AspGlyLysLeuLeuGlyLeuValThrTyrValIleLeuMetThrSerIlePheVa : 337 ||||||...::: ...::: ::!:!!!!! ! !:!!||| !:! AspGlyAsnIleLysThrPheIleLysThrLeuLeuPheTyrIleAlaIleThrMe 1394869 : GatggaaatataaaaacatttataaaaacattACTCTTTTACATCGCTATCACTAT : 1394923 338 : lAsnCysPheIleIleSerPheAlaGlyGluArgLeuLysGluGln >>>> Tar : 353 !.!....||||||.!!||||||||||||||| !|||!...!.:!! tGluAlaPheIlePheSerPheAlaGlyGluTyrLeuSerAsnLys++ 1394924 : GGAAGCATTCATCTTCTCCTTTGCCGGAGAATATCTCAGTAACAAAgt........ : 1394973 354 : get Intron 1 >>>> SerIleLysIleGlyGluSerAlaTyrPheAlaGluT : 365 353 bp |||:!!..!|||.!!.!.:!!|||||| !:!! | ++SerLeuSerIleSerAsnAlaAlaTyrSerSerProT 1394974 : .................agAGTCTATCAATTAGCAATGCAGCATATAGCTCACCTT : 1395360 366 : rpTyrLeuLeuProLysGlyLeuValTyrAspPheMetLeuIleMetIleArgSer : 383 ||||||||||| ! ! ! !:!! !.!!!!:|||:!!|||||||||||| rpTyrLeuLeuAspProGlnAspArgHisIleIleIleLeuLeuMetIleArgSer 1395361 : GGTACCTTCTGGATCCTCAAGACAGACATATCATTATTCTTCTCATGATAAGATCT : 1395414 384 : SerLysProAlaSerLeuSerThrGlyLysValSerAspLeuSerLeuAlaGlyPh : 402 ..!!:!! ! !!!!:!!!!!.!!|||||| !!! !||||||||||||! !||||| GlnArgArgLeuThrIleThrAlaGlyLysPheMetAspLeuSerLeuGluGlyPh 1395415 : CAAAGACGATTAACAATCACCGCTGGAAAATTTATGGACTTGTCTTTAGAAGGTTT : 1395471 403 : eAlaGlyLeu : 405 ||||..!:!! eAlaAsnVal 1395472 : TGCAAATGTA : 1395482 vulgar: gi|861722481|gb|AKO89996.1| 318 405 . KQ414716.1 1394868 1395482 + 140 M 34 102 5 0 2 I 0 349 3 0 2 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1394869 1395482 140 + . gene_id 1 ; sequence gi|861722481|gb|AKO89996.1| ; gene_orientation + KQ414716.1 exonerate:protein2genome:local cds 1394869 1394970 . + . KQ414716.1 exonerate:protein2genome:local exon 1394869 1394970 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local splice5 1394971 1394972 . + . intron_id 1 ; splice_site "GT" KQ414716.1 exonerate:protein2genome:local intron 1394971 1395323 . + . intron_id 1 KQ414716.1 exonerate:protein2genome:local splice3 1395322 1395323 . + . intron_id 0 ; splice_site "AG" KQ414716.1 exonerate:protein2genome:local cds 1395324 1395482 . + . KQ414716.1 exonerate:protein2genome:local exon 1395324 1395482 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1394869 1395482 140 + . alignment_id 1 ; Query gi|861722481|gb|AKO89996.1| ; Align 1394869 319 102 ; Align 1395324 353 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722465|gb|AKO89991.1| odorant receptor 27 [Microplitis mediator] Target: KQ414716.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold175, whole genome shotgun sequence Model: protein2genome:local Raw score: 106 Query range: 335 -> 385 Target range: 1387619 -> 1387769 336 : SerLeuArgValGlnGlnHisIleAlaAsnGlyAsnTrpTyrAspIleSerThrLy : 354 ||| !|||:!! !||| ::: ||| |||||||||:!!!.! !!:: SerGluArgIleThrGlnSerValTyrAsnPheLeuTrpTyrAspLeuLysProAr 1387620 : agtgAACGTATTACACAATCtgtgtacaattttctttggTACGATCTAAAACCTCG : 1387674 355 : sSerGlnLysLeuLeuIleLeuMetThrMetArgSerGlnValProCysIleLeuT : 373 !..! ::::::::::::|||::: :::||||||||| ! !! ||||||| gGluAlaArgIleValLeuLeuIleIleLeuArgSerGlnLysGluLeuIleLeuT 1387675 : AGAAGCTCgtattgtattattaataatattacgaTCTCAGAAAGAGTTAATACTCA : 1387731 374 : hrAlaGlyLysIleMetGluLeuSerValGluSerPhe : 385 |||||||||||.!!:!!.!.||||||:!!! :!!||| hrAlaGlyLysPheValAsnLeuSerLeuAlaAlaPhe 1387732 : CTGCGGGCAAATTTGTGAATCTTTCCTTGGCTGCATTT : 1387769 vulgar: gi|861722465|gb|AKO89991.1| 335 385 . KQ414716.1 1387619 1387769 + 106 M 50 150 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414716.1 exonerate:protein2genome:local gene 1387620 1387769 106 + . gene_id 1 ; sequence gi|861722465|gb|AKO89991.1| ; gene_orientation . KQ414716.1 exonerate:protein2genome:local cds 1387620 1387769 . + . KQ414716.1 exonerate:protein2genome:local exon 1387620 1387769 . + . insertions 0 ; deletions 0 KQ414716.1 exonerate:protein2genome:local similarity 1387620 1387769 106 + . alignment_id 1 ; Query gi|861722465|gb|AKO89991.1| ; Align 1387620 336 150 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722450|gb|AKO89986.1| odorant receptor 22 [Microplitis mediator] Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 134 Query range: 157 -> 221 Target range: 887582 -> 887774 158 : AsnSerSerIleValLeuGluLysProValLeuPheHisValGluTyrPheTyrAspL : 177 |||!.!!:! ..! ! !:!! !..!|||!:!! ||||||||| ! !||| AsnLysAsnArgThrGluProArgGlnThrLeuTyrProValGluTyrHisIleAspS 887583 : AATAAAAACCGGACCGAACCCAGACAGACTCTATACCCAGTGGAGTACCACATCgaca : 887640 178 : euGluLysTyrTyrTyrProLeuLeuIleHisSerTyrPheGlyThrMetAlaTyrMe : 196 |||||||||:::||| :!! ! !|||!!!||| !..!|||:!: ! !:! erGluLysTyrPheTyrLeuIleThrAlaHisCysTyrAlaSerThrValLeuLeuLe 887641 : gtgaaaaatatttttacctgATTACAGCTCATTGTTACGCCTCGACAGTACTTCTTCT : 887697 197 : tThrValAlaValAlaIleAspSerMetPheMetValTyrValGlnHisAlaCysAla : 215 ! ! !.!!|||!.! !|||!!!|||!:!!!:||| |||||||||!.!|||||| uLeuGlnThrValValHisAspThrMetTyrIleValLeuValGlnHisGlyCysAla 887698 : GCTTCAAACTGTCGTACACGACACAATGTACATTGTTCTGGTCCAACATGGCTGCGCT : 887754 216 : IlePheAlaValIleGly : 221 :!!|||||||||! ||| LeuPheAlaValThrGly 887755 : TTATTCGCAGTTACGGGG : 887774 vulgar: gi|861722450|gb|AKO89986.1| 157 221 . KQ414735.1 887582 887774 + 134 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 887583 887774 134 + . gene_id 1 ; sequence gi|861722450|gb|AKO89986.1| ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 887583 887774 . + . KQ414735.1 exonerate:protein2genome:local exon 887583 887774 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 887583 887774 134 + . alignment_id 1 ; Query gi|861722450|gb|AKO89986.1| ; Align 887583 158 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722450|gb|AKO89986.1| odorant receptor 22 [Microplitis mediator] Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 157 -> 220 Target range: 891678 -> 891867 158 : AsnSerSerIleValLeuGluLysProValLeuPheHisValGluTyrPheTyrAspL : 177 ::!|||!:! ! !! !|||::! ! !!||||||.!.:!!!!:||| ! ||| SerSerAsnTyrSerGlnGluArgAsnPheLeuPheGluLeuAspTyrGlyValAspS 891679 : TCCTCAAATTATTCGCAAGAGCGAAACTTTTTATTCGAACTCGACTATGGCGTGGACA : 891736 178 : euGluLysTyrTyrTyrProLeuLeuIleHisSerTyrPheGlyThrMetAlaTyrMe : 196 ::::::|||:::||| ::: ||||||||||||.!.|||||| !.! ! erGlnGlnTyrPheTyrTyrIleSerIleHisSerTyrMetGlyThrAlaValValAl 891737 : GccaacaatatttttattatatatccATTCATTCGTACATGGGAACTGCTGTAGTTGC : 891793 197 : tThrValAlaValAlaIleAspSerMetPheMetValTyrValGlnHisAlaCysAla : 215 !.!:!! !!.!.!! !|||!!!! !:!|||:!!||| !|||||||||! !||| aAsnLeuIleAlaThrCysAspThrThrTyrMetLeuTyrSerGlnHisAlaTyrAla 891794 : CAATTTAATTGCTACTTGCGATACTACCTACATGTTGTACTCTCAACATGCTTATGCT : 891850 216 : IlePheAlaValIle : 220 :!:||||||:!!:!! LeuPheAlaIleVal 891851 : TTGTTTGCAATTGTA : 891867 vulgar: gi|861722450|gb|AKO89986.1| 157 220 . KQ414735.1 891678 891867 + 129 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 891679 891867 129 + . gene_id 2 ; sequence gi|861722450|gb|AKO89986.1| ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 891679 891867 . + . KQ414735.1 exonerate:protein2genome:local exon 891679 891867 . + . insertions 0 ; deletions 0 KQ414735.1 exonerate:protein2genome:local similarity 891679 891867 129 + . alignment_id 2 ; Query gi|861722450|gb|AKO89986.1| ; Align 891679 158 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722465|gb|AKO89991.1| odorant receptor 27 [Microplitis mediator] Target: KQ414735.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold207, whole genome shotgun sequence Model: protein2genome:local Raw score: 107 Query range: 142 -> 216 Target range: 887555 -> 887774 143 : LeuProIleIleLeuAsnAsnIleLeuArgThrAsnLeuSerAlaProHisLysPheA : 162 :!! !!:!::!!:!! !.!. !|||!.!! !|||! !!!!! !|||...:!! ! IleAlaValValIlePheGluGluLeuAsnLysAsnArgThrGluProArgGlnThrL 887556 : ATTGCCGTGGTCATCTTCGAGGAATTGAATAAAAACCGGACCGAACCCAGACAGACTC : 887613 163 : laAspProMetGluTrpIleIleIleAspLysGluLysTyrTyrTrpIleLeuLeuSe : 181 ! !!|||:!!|||!:: !||||||...|||||||||::::::::::!! !:! euTyrProValGluTyr---HisIleAspSerGluLysTyrPheTyrLeuIleThrAl 887614 : TATACCCAGTGGAGTAC---CACATCgacagtgaaaaatatttttacctgATTACAGC : 887667 182 : rAsnSerSerValCysIleMetValIleLeuThrValLeuIleSerTyrAspValIle : 200 !:!!!!!! !!.!! ! !:!::!!:!!||| ! ! !:!! !:!!|||..!!!: aHisCysTyrAlaSerThrValLeuLeuLeuLeuGlnThrValValHisAspThrMet 887668 : TCATTGTTACGCCTCGACAGTACTTCTTCTGCTTCAAACTGTCGTACACGACACAATG : 887724 201 : PheIleThrPheValTyrHisAlaCysGlyLeuPheAlaIleThrGly : 216 !:!|||..!.!.||| ! |||!.!|||!.!|||||||||:!!|||||| TyrIleValLeuValGlnHisGlyCysAlaLeuPheAlaValThrGly 887725 : TACATTGTTCTGGTCCAACATGGCTGCGCTTTATTCGCAGTTACGGGG : 887774 vulgar: gi|861722465|gb|AKO89991.1| 142 216 . KQ414735.1 887555 887774 + 107 M 25 75 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414735.1 exonerate:protein2genome:local gene 887556 887774 107 + . gene_id 1 ; sequence gi|861722465|gb|AKO89991.1| ; gene_orientation . KQ414735.1 exonerate:protein2genome:local cds 887556 887774 . + . KQ414735.1 exonerate:protein2genome:local exon 887556 887774 . + . insertions 0 ; deletions 1 KQ414735.1 exonerate:protein2genome:local similarity 887556 887774 107 + . alignment_id 1 ; Query gi|861722465|gb|AKO89991.1| ; Align 887556 143 75 ; Align 887631 169 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722447|gb|AKO89985.1| odorant receptor 21 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 144 Query range: 133 -> 212 Target range: 14139 -> 13902 134 : MetLeuIleTyrPheCysMetProIleIleProLysValLeuAspIleValLeuProLeu : 153 :!::!!:!:!:! ! !! !|||:!:! !||| ! :!!|||||||||:!!|||||| ! ValIleLeuPheValThrThrProValThrProHisIleLeuAspIleLeuLeuProLys 14139 : GTCATCCTGTTCGTGACCACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAG : 14082 154 : AsnThrThrArgProGluLeuTyrLeuPheGluAlaGluTyrPheValAspGlnHisLys : 173 ||| !:!!||| !! ! !|||:!!!:! !||| ! ||||||..!|||:!!|||||| AsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLys 14081 : AACGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAG : 14022 174 : PheTyrTyrProIleLeuIleHisAlaTyrIleThrCysAlaValAlaValSerMetLeu : 193 !:! !! !|||:!!! ||| ! !..! ! !|||!.! !!! !:!!! ! TyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyr 14021 : TACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTAC : 13962 194 : ValAlaPheAspThrGluTyrAlaIleGlnAlaLeuHisGlySerGlyIlePheSer : 212 ||||||! !||||||...||| ! ! !.!! !||||||!!!|||:!:!!.:!! ValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAla 13961 : GTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCC : 13903 vulgar: gi|861722447|gb|AKO89985.1| 133 212 . KQ414772.1 14139 13902 - 144 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 13903 14139 144 - . gene_id 1 ; sequence gi|861722447|gb|AKO89985.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 13903 14139 . - . KQ414772.1 exonerate:protein2genome:local exon 13903 14139 . - . insertions 0 ; deletions 0 KQ414772.1 exonerate:protein2genome:local similarity 13903 14139 144 - . alignment_id 1 ; Query gi|861722447|gb|AKO89985.1| ; Align 14140 134 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722462|gb|AKO89990.1| odorant receptor 26 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 141 Query range: 129 -> 216 Target range: 18060 -> 17802 130 : AlaTyrMetSerAlaThrIlePheValLeuGluProValPheProArgIleLeuAsnVal : 149 ||||||!!:!!!:!! !:!:|||:!!! !! !||| !! !!|||:!::!!||| ! AlaTyrIleCysSerPheLeuPheIleGlnValProTrpSerThrArgLeuValAsnSer 18060 : GCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCG : 18003 150 : PheIleSerValAsnAlaThrAspProPheLysLeuAlaLeuProLeuGluTyrIleIle : 169 !:!! !!! !||| !||| !!!.:!!!!!!.!:!!||| ! !||| !.!! TyrLysThrGlnAsnIleThrProSerLeuGlnPheValIlePro---GlyTyrTyrPhe 18002 : TACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCC---GGATATTACTTC : 17946 170 : IleAspArgGluLysHisTyrTrpIleMetLeuPheValSerThrValPheValTyrAsn : 189 :!!|||..!! !:!!:!!|||!:: !!!::!!.!! !.!!||| ! :!!! ! ! ValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIleLeuIle 17945 : GTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATTTTGATT : 17886 190 : IleIleIleValLeuValSerCysAspIleMetTyrIleThrPheValGlnHisValCys : 209 :!!:!::!:|||! ! !:!!||||||! !! |||!!:..!.!.|||||||||..!||| ValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCys 17885 : GTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGC : 17826 210 : GlyLeuPheAlaValValGly : 216 |||||||||||||||!.!||| GlyLeuPheAlaValAlaGly 17825 : GGACTGTTCGCCGTGGCCGGG : 17803 vulgar: gi|861722462|gb|AKO89990.1| 129 216 . KQ414772.1 18060 17802 - 141 M 35 105 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17803 18060 141 - . gene_id 1 ; sequence gi|861722462|gb|AKO89990.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17803 18060 . - . KQ414772.1 exonerate:protein2genome:local exon 17803 18060 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 17803 18060 141 - . alignment_id 1 ; Query gi|861722462|gb|AKO89990.1| ; Align 18061 130 105 ; Align 17956 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722462|gb|AKO89990.1| odorant receptor 26 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 126 Query range: 85 -> 216 Target range: 29745 -> 29355 86 : ThrAsnLeuIleLysLysLeuHisAspArgValIleIleAspTrpSerLeuMetLeuAsn : 105 :!!...:!!:!!! !:::|||::: ::: :::||||||::: |||:::|||!!. SerArgIleValThrArgLeuTyr***LysCysLeuIleAspPheLeuLeuLeuLeuLys 29745 : TCGCGAATCGTTACACGgttatattgaaaatgtttaatcgactttcttcttctgttaAAG : 29688 106 : AspGluGluLysSerThrLeuGluLysHisThrAsnLeuGlyTyrLeuPheSerSerGly : 125 ! !:!! !!!:!!! ! !! ! !:!: ...||||||||| AlaLysThrValThrSerSerIleAlaIleIlePheValCysLeuPhePheSerSerArg 29687 : GCTAAAACTGTTACTTCATCAATCGCCATTATCTTCGTttgtctatttttttcttcacgt : 29628 126 : TrpAlaGlyPheAlaTyrMetSerAlaThrIlePheValLeuGluProValPheProArg : 145 :::.!!!.! !!.! !.!.!!! !..!||||||..!! !! ! !!:!! !|||||| PheThrAlaAsnGlyIlePheCysTyrValIlePheThrSerValAlaIleThrProArg 29627 : tTCACAGCAAATGGAATCTTCTGCTACGTTATATTCACCTCAGTGGCGATAACCCCTCGT : 29568 146 : IleLeuAsnValPheIleSerValAsnAlaThrAspProPheLysLeuAlaLeuProLeu : 165 :!!|||:!!:!!.!! !! !|||! !:!! ! ! ! !!! !! !||| ValLeuAspLeuIleSerProLysAsnGluSerArgGlyValGlyPheIleTyrPro--- 29567 : GTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTGGGCTTCATTTATCCT--- : 29508 166 : GluTyrIleIleIleAspArgGluLysHisTyrTrpIleMetLeuPheValSerThrVal : 185 ! !||| ! !:!!|||..!|||:!!||||||!:: !:!!:!! ! !! ! ! ! AlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrTyrLeuMetGlyHisMetLeuSer 29507 : GCATACTACGGTCTTGACGAAGAGGAGCATTACTACTATCTGATGGGTCACATGCTTTCC : 29451 186 : PheValTyrAsnIleIleIleValLeuValSerCysAspIleMetTyrIleThrPheVal : 205 ! :!! ! !:!:.!!.!!|||! !:!!|||||||||! !!:|||!!:!.! !!||| ValIleThrValValPhePheValTyrIleSerCysAspThrIleTyrMetAsnValVal 29450 : GTGATAACCGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATCTATATGAATGTCGTG : 29391 206 : GlnHisValCysGlyLeuPheAlaValValGly : 216 ||||||!.!|||||||||!!. !||| !||| GlnHisAlaCysGlyLeuLeuAsnValSerGly 29390 : CAACACGCGTGTGGATTATTGAACGTCTCTGGG : 29356 vulgar: gi|861722462|gb|AKO89990.1| 85 216 . KQ414772.1 29745 29355 - 126 M 79 237 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29356 29745 126 - . gene_id 2 ; sequence gi|861722462|gb|AKO89990.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29356 29745 . - . KQ414772.1 exonerate:protein2genome:local exon 29356 29745 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 29356 29745 126 - . alignment_id 2 ; Query gi|861722462|gb|AKO89990.1| ; Align 29746 86 237 ; Align 29509 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722462|gb|AKO89990.1| odorant receptor 26 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 130 -> 214 Target range: 20574 -> 20325 131 : TyrMetSerAlaThrIlePheValLeuGluProValPheProArgIleLeuAsnValPhe : 150 !:!:!: !!|||.!!||||||:!!! !! !||| !! |||! !||||||:!!:!!!:! PheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAspIleTyr 20574 : TTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTAC : 20517 151 : IleSerValAsnAlaThrAspProPheLysLeuAlaLeuProLeuGluTyrIleIleIle : 170 !!:!!||| !||| ! ! !!!!!.!! !||| ! ||| ! !!: AlaProLeuAsnLysThrArgLysArgValPheValTyrPro---AlaTyrTyrTrpMet 20516 : GCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCA---GCCTATTACTGGATG : 20460 171 : AspArgGluLysHisTyrTrpIleMetLeuPheValSerThrValPheValTyrAsnIle : 190 |||! !|||:!!:!!||| !||||||:!!.!. !! !! ! !! ! ||| !! :!! AspProGluGlnTyrTyrMetIleMetIleIleHisIleMetPheValValIleMetVal 20459 : GATCCTGAGCAATACTACATGATAATGATAATACACATAATGTTCGTGGTGATCATGGTC : 20400 191 : IleIleValLeuValSerCysAspIleMetTyrIleThrPheValGlnHisValCysGly : 210 !:!!:!!!!! !:!!||||||!!:! |||:!: ! !|||||||||!.!|||||| CysValIlePheCysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGly 20399 : TGTGTCATATTCTGTGCTTGCGACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGC : 20340 211 : LeuPheAlaVal : 214 |||!!.|||||| LeuLeuAlaVal 20339 : TTATTGGCTGTC : 20326 vulgar: gi|861722462|gb|AKO89990.1| 130 214 . KQ414772.1 20574 20325 - 125 M 34 102 G 1 0 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20574 125 - . gene_id 3 ; sequence gi|861722462|gb|AKO89990.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20574 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20574 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 20326 20574 125 - . alignment_id 3 ; Query gi|861722462|gb|AKO89990.1| ; Align 20575 131 102 ; Align 20473 166 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722462|gb|AKO89990.1| odorant receptor 26 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 121 Query range: 119 -> 216 Target range: 33700 -> 33412 120 : TyrLeuPheSerSerGlyTrpAlaGlyPheAlaTyrMetSerAlaThrIlePheValLeu : 139 ||| |||||||||...:::.....! !!.! .!.!!! !! !!!:||| !! ! TyrSerPheSerSerAsnPheThrAlaAsnGlyValPheCysTyrIleMetPheSerSer 33700 : tattcattttcttcaaatttcacagCAAACGGAGTGTTTTGCTACATCATGTTCAGCTCG : 33643 140 : GluProValPheProArgIleLeuAsnValPheIleSerValAsnAlaThrAspProPhe : 159 ! !||| !!.!.|||!.!.!!:!!:!!||| :!:||| !|||! !:!! !!!. AlaProPheIleProHisPheIleAspValAlaLeuSerLysAsnGluSerArgLysLeu 33642 : GCGCCTTTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAACGAGTCACGAAAATTA : 33583 160 : LysLeuAlaLeuProLeuGluTyrIleIleIleAspArgGluLysHisTyrTrpIleMet : 179 !..||| !! !||| ! ||| ! !||||||!:!!::|||:::|||::: ::: SerLeuMetTyrPro---AlaTyrTyrGlyIleAspGlnAspLysTyrTyrTyrTyrLeu 33582 : AGTTTGATGTACCCT---GCCTATTACGGCATTGACCAGGacaagtattattattatcta : 33526 180 : LeuPheValSerThrValPheValTyrAsnIleIleIleValLeuValSerCysAspIle : 199 ::: ! !! !! ! ! ! ! :!:.!!.!!|||!!!:!!|||||||||! MetAlaHisMetMetSerAlaGlyAlaAlaValPhePheValPheMetSerCysAspThr 33525 : atgGCTCACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATGTCCTGCGACACG : 33466 200 : MetTyrIleThrPheValGlnHisValCysGlyLeuPheAlaValValGly : 216 !!:|||!!:!.!.!!|||||||||!.!|||||||||!!. !:!! !||| IleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuPheIleSerGly 33465 : ATTTATATGAATATCGTTCAACACGCGTGCGGATTGTTGTTCATTTCCGGG : 33413 vulgar: gi|861722462|gb|AKO89990.1| 119 216 . KQ414772.1 33700 33412 - 121 M 45 135 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33413 33700 121 - . gene_id 4 ; sequence gi|861722462|gb|AKO89990.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33413 33700 . - . KQ414772.1 exonerate:protein2genome:local exon 33413 33700 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 33413 33700 121 - . alignment_id 4 ; Query gi|861722462|gb|AKO89990.1| ; Align 33701 120 135 ; Align 33566 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722462|gb|AKO89990.1| odorant receptor 26 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 134 -> 216 Target range: 42715 -> 42472 135 : ThrIlePheValLeuGluProValPheProArgIleLeuAsnValPheIleSerValAsn : 154 |||!!:|||:!!! !! !||| !.!.|||!.!:!!! !:!!|||.!.:!!||| !||| ThrMetPheIleSerAlaProTyrIleProHisValTyrAspValMetLeuSerLysAsn 42715 : ACAATGTTTATCTCTGCGCCTTATATACCGCATGTATATGATGTTATGTTATCGAAAAAC : 42658 155 : AlaThrAspProPheLysLeuAlaLeuProLeuGluTyrIleIleIleAspArgGluLys : 174 ! !:!! !!!. !!! !! !||| ! ||| ! !:!!|||!:!!!:||| GluSerArgLysLeuGlyPheIleTyrPro---AlaTyrTyrGlyValAspGlnAspLys 42657 : GAGTCACGAAAGTTGGGTTTCATTTACCCT---GCCTATTATGGCGTTGATCAAGACAAG : 42601 175 : HisTyrTrpIleMetLeuPheValSerThrValPheValTyrAsnIleIleIleValLeu : 194 :!!|||!:: !!!::!! ! !! !||| ! ! !! :!:.!!.!!..!!!! TyrTyrTyrTyrIleIleAlaHisMetThrSerGlyGlyLeuValValPhePheThrPhe 42600 : TATTATTACTATATAATAGCTCACATGACATCTGGGGGCTTAGTGGTGTTTTTCACCTTT : 42541 195 : ValSerCysAspIleMetTyrIleThrPheValGlnHisValCysGlyLeuPheAlaVal : 214 :!!|||||||||! !!:|||!!:!.!.!!|||||||||!.!|||||||||!!. !:!! IleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuLeuIle 42540 : ATCTCCTGCGACACGATTTACATGAATATCGTGCAACACGCGTGCGGATTGTTGTTGATT : 42481 215 : ValGly : 216 !||| SerGly 42480 : TCTGGG : 42473 vulgar: gi|861722462|gb|AKO89990.1| 134 216 . KQ414772.1 42715 42472 - 117 M 30 90 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42473 42715 117 - . gene_id 5 ; sequence gi|861722462|gb|AKO89990.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42473 42715 . - . KQ414772.1 exonerate:protein2genome:local exon 42473 42715 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 42473 42715 117 - . alignment_id 5 ; Query gi|861722462|gb|AKO89990.1| ; Align 42716 135 90 ; Align 42626 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722462|gb|AKO89990.1| odorant receptor 26 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 134 -> 216 Target range: 38012 -> 37769 135 : ThrIlePheValLeuGluProValPheProArgIleLeuAsnValPheIleSerValAsn : 154 ..!||||||..!! !! ! !!:!! ||||||:!!|||:!!:!!.!! ! !! !||| ValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 38012 : GTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAAC : 37955 155 : AlaThrAspProPheLysLeuAlaLeuProLeuGluTyrIleIleIleAspArgGluLys : 174 ! !:!! ! ! !! ! !!! !! !||| ! !||| ! !:!!|||..!|||:!! GluSerArgGlyValAspPheIleTyrPro---AlaTyrTyrGlyLeuAspGluGluGlu 37954 : GAATCGCGTGGGGTTGACTTCATTTATCCT---GCATACTACGGTCTCGACGAGGAGGAA : 37898 175 : HisTyrTrpIleMetLeuPheValSerThrValPheValTyrAsnIleIleIleValLeu : 194 ||||||!::|||:!!:!! ! !! ! ! ! ! :!! ! :!:.!!.!!|||! ! HisTyrTyrIleLeuMetGlyHisMetLeuCysValIleThrValValPhePheValTyr 37897 : CATTATTACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTGTAC : 37838 195 : ValSerCysAspIleMetTyrIleThrPheValGlnHisValCysGlyLeuPheAlaVal : 214 :!!|||||||||! !!:|||!!:!:!.!!|||||||||!.!|||||||||.!. !||| IleSerCysAspThrIleTyrMetSerIleValGlnHisAlaCysGlyLeuLeuAsnVal 37837 : ATCTCCTGTGACACGATCTACATGAGCATCGTTCAACACGCGTGCGGATTACTGAACGTC : 37778 215 : ValGly : 216 !||| SerGly 37777 : TCTGGG : 37770 vulgar: gi|861722462|gb|AKO89990.1| 134 216 . KQ414772.1 38012 37769 - 116 M 30 90 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37770 38012 116 - . gene_id 6 ; sequence gi|861722462|gb|AKO89990.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37770 38012 . - . KQ414772.1 exonerate:protein2genome:local exon 37770 38012 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 37770 38012 116 - . alignment_id 6 ; Query gi|861722462|gb|AKO89990.1| ; Align 38013 135 90 ; Align 37923 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722462|gb|AKO89990.1| odorant receptor 26 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 134 -> 216 Target range: 24419 -> 24176 135 : ThrIlePheValLeuGluProValPheProArgIleLeuAsnValPheIleSerValAsn : 154 ..!:!!|||..! !! ! !!:!! !||||||:!!|||:!!:!!.!! !! !||| ValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 24419 : GTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAAC : 24362 155 : AlaThrAspProPheLysLeuAlaLeuProLeuGluTyrIleIleIleAspArgGluLys : 174 ! !:!! ! ! ! !!! !! !||| !.!.||| !:!!|||..!|||:!! GluSerArgGlyValGlyPheIleTyrProAlaAsnTyr---GlyValAspGluGluGlu 24361 : GAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTAC---GGCGTCGACGAAGAGGAG : 24305 175 : HisTyrTrpIleMetLeuPheValSerThrValPheValTyrAsnIleIleIleValLeu : 194 ||||||!:: !:!!:!! ! !! ! ! ! ! :!! ! !:!:.!!.!!|||! ! HisTyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyr 24304 : CATTACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTAC : 24245 195 : ValSerCysAspIleMetTyrIleThrPheValGlnHisValCysGlyLeuPheAlaVal : 214 :!!|||||||||! !!:|||!!:!.!.!!|||||||||!.!|||||||||!!. !:!! IleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeu 24244 : ATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTC : 24185 215 : ValGly : 216 !||| SerGly 24184 : TCTGGG : 24177 vulgar: gi|861722462|gb|AKO89990.1| 134 216 . KQ414772.1 24419 24176 - 106 M 33 99 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24177 24419 106 - . gene_id 7 ; sequence gi|861722462|gb|AKO89990.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24177 24419 . - . KQ414772.1 exonerate:protein2genome:local exon 24177 24419 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 24177 24419 106 - . alignment_id 7 ; Query gi|861722462|gb|AKO89990.1| ; Align 24420 135 99 ; Align 24321 169 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722441|gb|AKO89983.1| odorant receptor 19 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 136 Query range: 129 -> 216 Target range: 18060 -> 17802 130 : AlaTyrMetSerThrThrIlePheValThrGluProIlePheProArgIleValAsnIle : 149 ||||||!!:!!!:!! !:!:|||:!! !! !||| ! !!|||:!:|||||| AlaTyrIleCysSerPheLeuPheIleGlnValProTrpSerThrArgLeuValAsnSer 18060 : GCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCG : 18003 150 : PheValGluThrAsnGluThrIleProLeuLysLeuAlaLeuProLeuGluTyrIleIle : 169 !:! ! ! !||| !||| ! !|||:!!!!!!.!:!!||| ! ! |||.!!:!! TyrLysThrGlnAsnIleThrProSerLeuGlnPheValIleProGlyTyrTyrPheVal 18002 : TACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTC : 17943 170 : IleAspIleAspLysHisTyrTrpLeuIleLeuThrIleThrAsnIlePheValPheAsn : 189 !!!::!!!!: ! :!!|||!:::!!|||||| ! !||| ! :!!!!.! ! AspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThr---CysThrIleLeuIle 17942 : GACGAAGTAGAATACTATTATTACATCATACTTCACGGAACG---TGCACAATTTTGATT : 17886 190 : IleIleIleValIleIleSerCysAspIleValLeuIleThrPheValGlnHisValCys : 209 :!!:!::!:||| ! !:!!||||||! ! !! !!!:..!.!.|||||||||..!||| ValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCys 17885 : GTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGC : 17826 210 : GlyLeuPheAlaValValGly : 216 |||||||||||||||!.!||| GlyLeuPheAlaValAlaGly 17825 : GGACTGTTCGCCGTGGCCGGG : 17803 vulgar: gi|861722441|gb|AKO89983.1| 129 216 . KQ414772.1 18060 17802 - 136 M 54 162 G 1 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17803 18060 136 - . gene_id 1 ; sequence gi|861722441|gb|AKO89983.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17803 18060 . - . KQ414772.1 exonerate:protein2genome:local exon 17803 18060 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 17803 18060 136 - . alignment_id 1 ; Query gi|861722441|gb|AKO89983.1| ; Align 18061 130 162 ; Align 17899 185 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722441|gb|AKO89983.1| odorant receptor 19 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 120 Query range: 134 -> 216 Target range: 42715 -> 42472 135 : ThrIlePheValThrGluProIlePheProArgIleValAsnIlePheValGluThrAsn : 154 |||!!:|||:!!:!!! !||| !.!.|||!.!:!! !:!!:!!.!.:!!..!! !||| ThrMetPheIleSerAlaProTyrIleProHisValTyrAspValMetLeuSerLysAsn 42715 : ACAATGTTTATCTCTGCGCCTTATATACCGCATGTATATGATGTTATGTTATCGAAAAAC : 42658 155 : GluThrIleProLeuLysLeuAlaLeuProLeuGluTyrIleIleIleAspIleAspLys : 174 |||:!! ! !||| !!! !! !||| ! ||| ! !:!!||| !|||||| GluSerArgLysLeuGlyPheIleTyrPro---AlaTyrTyrGlyValAspGlnAspLys 42657 : GAGTCACGAAAGTTGGGTTTCATTTACCCT---GCCTATTATGGCGTTGATCAAGACAAG : 42601 175 : HisTyrTrpLeuIleLeuThrIleThrAsnIlePheValPheAsnIleIleIleValIle : 194 :!!|||!::! !|||:!!.!! !! !!.. ! ! !!!. :!:.!!.!!..!.!! TyrTyrTyrTyrIleIleAlaHisMetThrSerGlyGlyLeuValValPhePheThrPhe 42600 : TATTATTACTATATAATAGCTCACATGACATCTGGGGGCTTAGTGGTGTTTTTCACCTTT : 42541 195 : IleSerCysAspIleValLeuIleThrPheValGlnHisValCysGlyLeuPheAlaVal : 214 ||||||||||||! :!!! !!!:!.!.!!|||||||||!.!|||||||||!!. !:!! IleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuLeuIle 42540 : ATCTCCTGCGACACGATTTACATGAATATCGTGCAACACGCGTGCGGATTGTTGTTGATT : 42481 215 : ValGly : 216 !||| SerGly 42480 : TCTGGG : 42473 vulgar: gi|861722441|gb|AKO89983.1| 134 216 . KQ414772.1 42715 42472 - 120 M 30 90 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 42473 42715 120 - . gene_id 2 ; sequence gi|861722441|gb|AKO89983.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 42473 42715 . - . KQ414772.1 exonerate:protein2genome:local exon 42473 42715 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 42473 42715 120 - . alignment_id 2 ; Query gi|861722441|gb|AKO89983.1| ; Align 42716 135 90 ; Align 42626 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722441|gb|AKO89983.1| odorant receptor 19 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 117 Query range: 121 -> 216 Target range: 33694 -> 33412 122 : PheSerMetGlyTyrAlaGlyLeuAlaTyrMetSerThrThrIlePheValThrGluPro : 141 |||||| ...:::.....! !!.! .!.!!! !! !!!:||| !:!!! !||| PheSerSerAsnPheThrAlaAsnGlyValPheCysTyrIleMetPheSerSerAlaPro 33694 : ttttcttcaaatttcacagCAAACGGAGTGTTTTGCTACATCATGTTCAGCTCGGCGCCT : 33637 142 : IlePheProArgIleValAsnIlePheValGluThrAsnGluThrIleProLeuLysLeu : 161 .!!.!.|||!.!.!!:!!:!!:!! :!!..!! !||||||:!! ! !|||!..||| PheIleProHisPheIleAspValAlaLeuSerLysAsnGluSerArgLysLeuSerLeu 33636 : TTTATACCGCATTTTATCGATGTTGCGTTGTCGAAAAACGAGTCACGAAAATTAAGTTTG : 33577 162 : AlaLeuProLeuGluTyrIleIleIleAspIleAspLysHisTyrTrpLeuIleLeuThr : 181 !! !||| ! ||| ! !|||||| ||||||:::|||::: ::::::.!! MetTyrPro---AlaTyrTyrGlyIleAspGlnAspLysTyrTyrTyrTyrLeuMetAla 33576 : ATGTACCCT---GCCTATTACGGCATTGACCAGGacaagtattattattatctaatgGCT : 33520 182 : IleThrAsnIlePheValPheAsnIleIleIleValIleIleSerCysAspIleValLeu : 201 !! !! ! ! ! ! :!:.!!.!!|||.!!!!:|||||||||! :!!! ! HisMetMetSerAlaGlyAlaAlaValPhePheValPheMetSerCysAspThrIleTyr 33519 : CACATGATGAGCGCAGGGGCAGCGGTGTTTTTCGTATTTATGTCCTGCGACACGATTTAT : 33460 202 : IleThrPheValGlnHisValCysGlyLeuPheAlaValValGly : 216 !!:!.!.!!|||||||||!.!|||||||||!!. !:!! !||| MetAsnIleValGlnHisAlaCysGlyLeuLeuPheIleSerGly 33459 : ATGAATATCGTTCAACACGCGTGCGGATTGTTGTTCATTTCCGGG : 33413 vulgar: gi|861722441|gb|AKO89983.1| 121 216 . KQ414772.1 33694 33412 - 117 M 43 129 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 33413 33694 117 - . gene_id 3 ; sequence gi|861722441|gb|AKO89983.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 33413 33694 . - . KQ414772.1 exonerate:protein2genome:local exon 33413 33694 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 33413 33694 117 - . alignment_id 3 ; Query gi|861722441|gb|AKO89983.1| ; Align 33695 122 129 ; Align 33566 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722441|gb|AKO89983.1| odorant receptor 19 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 120 -> 216 Target range: 29640 -> 29355 121 : PhePheSerMetGlyTyrAlaGlyLeuAlaTyrMetSerThrThrIlePheValThrGlu : 140 ||||||||| ::!.!!!.! !!.! !.!.!!! !..!||||||..!:!!! ! PhePheSerSerArgPheThrAlaAsnGlyIlePheCysTyrValIlePheThrSerVal 29640 : tttttttcttcacgttTCACAGCAAATGGAATCTTCTGCTACGTTATATTCACCTCAGTG : 29583 141 : ProIlePheProArgIleValAsnIlePheValGluThrAsnGluThrIleProLeuLys : 160 !!||| !||||||:!!:!!:!!:!!.!! ! !! !||||||:!! ! !:!! AlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyValGly 29582 : GCGATAACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTGGGC : 29523 161 : LeuAlaLeuProLeuGluTyrIleIleIleAspIleAspLysHisTyrTrpLeuIleLeu : 180 !!! !! !||| ! !||| ! !:!!||| !!!::!!||||||!::! !:!::!! PheIleTyrPro---AlaTyrTyrGlyLeuAspGluGluGluHisTyrTyrTyrLeuMet 29522 : TTCATTTATCCT---GCATACTACGGTCTTGACGAAGAGGAGCATTACTACTATCTGATG : 29466 181 : ThrIleThrAsnIlePheValPheAsnIleIleIleValIleIleSerCysAspIleVal : 200 ! !! ! ! ! ! :!! ! !:!:.!!.!!||| !||||||||||||! :!! GlyHisMetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThrIle 29465 : GGTCACATGCTTTCCGTGATAACCGTCGTGTTTTTCGTCTACATCTCCTGTGACACGATC : 29406 201 : LeuIleThrPheValGlnHisValCysGlyLeuPheAlaValValGly : 216 ! !!!:!.! !!|||||||||!.!|||||||||!!. !||| !||| TyrMetAsnValValGlnHisAlaCysGlyLeuLeuAsnValSerGly 29405 : TATATGAATGTCGTGCAACACGCGTGTGGATTATTGAACGTCTCTGGG : 29356 vulgar: gi|861722441|gb|AKO89983.1| 120 216 . KQ414772.1 29640 29355 - 114 M 44 132 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 29356 29640 114 - . gene_id 4 ; sequence gi|861722441|gb|AKO89983.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 29356 29640 . - . KQ414772.1 exonerate:protein2genome:local exon 29356 29640 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 29356 29640 114 - . alignment_id 4 ; Query gi|861722441|gb|AKO89983.1| ; Align 29641 121 132 ; Align 29509 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722441|gb|AKO89983.1| odorant receptor 19 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 134 -> 216 Target range: 38012 -> 37769 135 : ThrIlePheValThrGluProIlePheProArgIleValAsnIlePheValGluThrAsn : 154 ..!||||||..!:!!! ! !!||| ||||||:!!:!!:!!:!!.!! ! !! !||| ValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 38012 : GTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAAC : 37955 155 : GluThrIleProLeuLysLeuAlaLeuProLeuGluTyrIleIleIleAspIleAspLys : 174 |||:!! ! !:!! ! !!! !! !||| ! !||| ! !:!!||| !!::!! GluSerArgGlyValAspPheIleTyrPro---AlaTyrTyrGlyLeuAspGluGluGlu 37954 : GAATCGCGTGGGGTTGACTTCATTTATCCT---GCATACTACGGTCTCGACGAGGAGGAA : 37898 175 : HisTyrTrpLeuIleLeuThrIleThrAsnIlePheValPheAsnIleIleIleValIle : 194 ||||||!:::!!:!::!! ! !! ! ! ! ! :!! ! :!:.!!.!!||| ! HisTyrTyrIleLeuMetGlyHisMetLeuCysValIleThrValValPhePheValTyr 37897 : CATTATTACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTGTAC : 37838 195 : IleSerCysAspIleValLeuIleThrPheValGlnHisValCysGlyLeuPheAlaVal : 214 ||||||||||||! :!!! !!!:!:!.!!|||||||||!.!|||||||||.!. !||| IleSerCysAspThrIleTyrMetSerIleValGlnHisAlaCysGlyLeuLeuAsnVal 37837 : ATCTCCTGTGACACGATCTACATGAGCATCGTTCAACACGCGTGCGGATTACTGAACGTC : 37778 215 : ValGly : 216 !||| SerGly 37777 : TCTGGG : 37770 vulgar: gi|861722441|gb|AKO89983.1| 134 216 . KQ414772.1 38012 37769 - 112 M 30 90 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 37770 38012 112 - . gene_id 5 ; sequence gi|861722441|gb|AKO89983.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 37770 38012 . - . KQ414772.1 exonerate:protein2genome:local exon 37770 38012 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 37770 38012 112 - . alignment_id 5 ; Query gi|861722441|gb|AKO89983.1| ; Align 38013 135 90 ; Align 37923 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722441|gb|AKO89983.1| odorant receptor 19 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 119 -> 216 Target range: 24464 -> 24176 120 : AsnPhePheSerMetGlyTyrAlaGlyLeuAlaTyrMetSerThrThrIlePheValThr : 139 ...||| |||::: ! !|||!.! !!.! !.!.!!! !..!:!!|||..!.!! ThrPheSerSerLeuTyrValAlaAlaAsnGlyIlePheCysTyrValLeuPheThrAla 24464 : acattttcttctctataTGTCGCAGCAAATGGAATCTTCTGCTACGTTCTCTTCACCGCA : 24407 140 : GluProIlePheProArgIleValAsnIlePheValGluThrAsnGluThrIleProLeu : 159 ! ! !!||| !||||||:!!:!!:!!:!!.!! ! !! !||||||:!! ! !:!! ValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyVal 24406 : GTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTG : 24347 160 : LysLeuAlaLeuProLeuGluTyrIleIleIleAspIleAspLysHisTyrTrpLeuIle : 179 !!! !! !||| !.!.||| !:!!||| !!!::!!||||||!::! !:!: GlyPheIleTyrProAlaAsnTyr---GlyValAspGluGluGluHisTyrTyrTyrLeu 24346 : GGCTTCATTTATCCTGCCAACTAC---GGCGTCGACGAAGAGGAGCATTACTACTATCTG : 24290 180 : LeuThrIleThrAsnIlePheValPheAsnIleIleIleValIleIleSerCysAspIle : 199 :!! ! !! ! ! ! ! :!! ! !:!:.!!.!!||| !||||||||||||! MetGlyHisMetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThr 24289 : ATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGTGACACG : 24230 200 : ValLeuIleThrPheValGlnHisValCysGlyLeuPheAlaValValGly : 216 :!!! !!!:!.!.!!|||||||||!.!|||||||||!!. !:!! !||| IleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSerGly 24229 : ATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCTGGG : 24177 vulgar: gi|861722441|gb|AKO89983.1| 119 216 . KQ414772.1 24464 24176 - 105 M 48 144 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 24177 24464 105 - . gene_id 6 ; sequence gi|861722441|gb|AKO89983.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 24177 24464 . - . KQ414772.1 exonerate:protein2genome:local exon 24177 24464 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 24177 24464 105 - . alignment_id 6 ; Query gi|861722441|gb|AKO89983.1| ; Align 24465 120 144 ; Align 24321 169 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722441|gb|AKO89983.1| odorant receptor 19 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 103 Query range: 130 -> 214 Target range: 20574 -> 20325 131 : TyrMetSerThrThrIlePheValThrGluProIlePheProArgIleValAsnIlePhe : 150 !:!:!: !!.!!.!!||||||:!! !! !|||.!! |||! !|||:!!:!!|||!:! PheLeuProAlaAlaIlePheLeuCysValProPheAlaProIleIleLeuAspIleTyr 20574 : TTCCTTCCCGCGGCCATATTCTTATGCGTGCCTTTCGCACCGATCATCTTGGACATTTAC : 20517 151 : ValGluThrAsnGluThrIleProLeuLysLeuAlaLeuProLeuGluTyrIleIleIle : 170 !.! ! !|||:!!|||! ! !! ! !!!!!.!! !||| ! ||| ! !!: AlaProLeuAsnLysThrArgLysArgValPheValTyrPro---AlaTyrTyrTrpMet 20516 : GCGCCACTGAACAAAACGAGAAAACGTGTGTTCGTTTATCCA---GCCTATTACTGGATG : 20460 171 : AspIleAspLysHisTyrTrpLeuIleLeuThrIleThrAsnIlePheValPheAsnIle : 190 ||| !!!::!!:!!||| !:!!!!::!!! ! !! !! .!! ! |||.!!! :!! AspProGluGlnTyrTyrMetIleMetIleIleHisIleMetPheValValIleMetVal 20459 : GATCCTGAGCAATACTACATGATAATGATAATACACATAATGTTCGTGGTGATCATGGTC : 20400 191 : IleIleValIleIleSerCysAspIleValLeuIleThrPheValGlnHisValCysGly : 210 !:!!:!!.!! !:!!||||||!!: !! !:!: ! !|||||||||!.!|||||| CysValIlePheCysAlaCysAspMetAsnTyrValTyrAlaValGlnHisAlaCysGly 20399 : TGTGTCATATTCTGTGCTTGCGACATGAACTACGTGTACGCTGTGCAGCACGCATGCGGC : 20340 211 : LeuPheAlaVal : 214 |||!!.|||||| LeuLeuAlaVal 20339 : TTATTGGCTGTC : 20326 vulgar: gi|861722441|gb|AKO89983.1| 130 214 . KQ414772.1 20574 20325 - 103 M 34 102 G 1 0 M 49 147 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 20326 20574 103 - . gene_id 7 ; sequence gi|861722441|gb|AKO89983.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 20326 20574 . - . KQ414772.1 exonerate:protein2genome:local exon 20326 20574 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 20326 20574 103 - . alignment_id 7 ; Query gi|861722441|gb|AKO89983.1| ; Align 20575 131 102 ; Align 20473 166 147 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722465|gb|AKO89991.1| odorant receptor 27 [Microplitis mediator] Target: KQ414772.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold360, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 129 -> 216 Target range: 18060 -> 17802 130 : ValTyrAlaAlaThrValGlnPheIleThrGluProValLeuProIleIleLeuAsnAsn : 149 !.!||| !..!:!! !! !|||||| !! !||| !! ! !! !:!::!!|||::: AlaTyrIleCysSerPheLeuPheIleGlnValProTrpSerThrArgLeuValAsnSer 18060 : GCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCG : 18003 150 : IleLeuArgThrAsnLeuSerAlaProHisLysPheAlaAspProMetGluTrpIleIle : 169 ! !! ! !|||:!!!!! !! ! :!!|||!.! ||| ! !::.!!:!! TyrLysThrGlnAsnIleThrProSerLeuGlnPheValIleProGlyTyrTyrPheVal 18002 : TACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTC : 17943 170 : IleAspLysGluLysTyrTyrTrpIleLeuLeuSerAsnSerSerValCysIleMetVal : 189 !!!: !||| ! ||||||!::|||:!!||| :!!.!!!!! ! |||:!!:!! AspGluValGluTyrTyrTyrTyrIleIleLeu---HisGlyThrCysThrIleLeuIle 17942 : GACGAAGTAGAATACTATTATTACATCATACTT---CACGGAACGTGCACAATTTTGATT : 17886 190 : IleLeuThrValLeuIleSerTyrAspValIlePheIleThrPheValTyrHisAlaCys : 209 :!!:!!..!|||! ! !:!!! !|||..!! !!:!!!:..!.!.||| ! |||.!!||| ValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCys 17885 : GTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGC : 17826 210 : GlyLeuPheAlaIleThrGly : 216 ||||||||||||:!:.!!||| GlyLeuPheAlaValAlaGly 17825 : GGACTGTTCGCCGTGGCCGGG : 17803 vulgar: gi|861722465|gb|AKO89991.1| 129 216 . KQ414772.1 18060 17802 - 108 M 51 153 G 1 0 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414772.1 exonerate:protein2genome:local gene 17803 18060 108 - . gene_id 1 ; sequence gi|861722465|gb|AKO89991.1| ; gene_orientation . KQ414772.1 exonerate:protein2genome:local cds 17803 18060 . - . KQ414772.1 exonerate:protein2genome:local exon 17803 18060 . - . insertions 0 ; deletions 1 KQ414772.1 exonerate:protein2genome:local similarity 17803 18060 108 - . alignment_id 1 ; Query gi|861722465|gb|AKO89991.1| ; Align 18061 130 153 ; Align 17908 182 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722468|gb|AKO89992.1| odorant receptor 28 [Microplitis mediator] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 149 Query range: 331 -> 399 Target range: 1345564 -> 1345846 332 : SerPheLysValCysGluAlaTyrTyrAspCysLeuTrpTyrLysMetProLysGl : 350 |||! !:!!:!! :!!|||! !||| ! !! !|||||| ! :!:||| ! :! SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 351 : uSerSerLysThrIleValLeuCysMetAlaArgSerGlnLysProLeuGlyLeuT : 369 !! !!!!::!:!!:!!:!!!!!|||!!:||||||||||||||||||! ! !|||| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 370 : hrAlaGlyLysPheGlyAlaPheCysLeuSerThrLeuThrAsp >>>> Targe : 384 |||||||||||||| !!.!|||! |||..!|||!!! ! ! hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIle++ 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCgt.......... : 1345723 385 : t Intron 1 >>>> ValValLysThrAlaMetAlaTyrLeuSerValLeuArg : 396 78 bp :!!||||||.!!:!!|||||||||||||||||||||!:! ++IleValLysAlaSerMetAlaTyrLeuSerValLeuLys 1345724 : ...............agATAGTAAAAGCGTCGATGGCCTATCTTTCCGTTCTGAAA : 1345835 397 : ThrPheLeu : 399 !:!.!!:!! SerIleIle 1345836 : AGCATTATC : 1345846 vulgar: gi|861722468|gb|AKO89992.1| 331 399 . KQ414782.1 1345564 1345846 + 149 M 52 156 5 0 2 I 0 74 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345846 149 + . gene_id 1 ; sequence gi|861722468|gb|AKO89992.1| ; gene_orientation + KQ414782.1 exonerate:protein2genome:local cds 1345565 1345720 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345720 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local splice5 1345721 1345722 . + . intron_id 1 ; splice_site "GT" KQ414782.1 exonerate:protein2genome:local intron 1345721 1345798 . + . intron_id 1 KQ414782.1 exonerate:protein2genome:local splice3 1345797 1345798 . + . intron_id 0 ; splice_site "aG" KQ414782.1 exonerate:protein2genome:local cds 1345799 1345846 . + . KQ414782.1 exonerate:protein2genome:local exon 1345799 1345846 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345846 149 + . alignment_id 1 ; Query gi|861722468|gb|AKO89992.1| ; Align 1345565 332 156 ; Align 1345799 384 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722468|gb|AKO89992.1| odorant receptor 28 [Microplitis mediator] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 148 Query range: 163 -> 261 Target range: 1344648 -> 1344942 164 : AspValGluMetGluAsnAlaThrMetSerPheIleLeuProTyrArgPheHisLe : 182 ..!..!|||.!....|||..!|||:!: !!!:! |||||| !:! ! :!!! SerThrGluPheSerAsnCysThrLeuProTyrGluLeuProMetLysValAsnHi 1344649 : TCCACAGAGTTCAGTAACTGTACTCTTCCTTACGAGCTACCAATGAAAGTGAACCA : 1344703 183 : uPheTyrGlnValAsnAspSerArgThrTrpAlaLeuThrTyrLeuSerHisPheP : 201 !.!.|||:!!|||!..!!: !||||||!::|||||| !! !:!!! ! ! ! | sLeuTyrGluValThrGluValArgThrTyrAlaLeuPheCysValTyrPheValP 1344704 : CCTGTACGAAGTGACAGAGGTGCGGACGTACGCTTTGTTCTGCGTTTACTTCGTAC : 1344760 202 : roPheValPheValSerGlyPheGlyGlnThrAlaAlaAspCysLeuMetValThr : 219 || !.!.:!! ! !.!!||| !|||!.!|||||| !!|||:!:|||||| roThrSerMetLeuLeuThrIleGlyAlaThrGlyAlaAspSerLeuLeuValThr 1344761 : CGACGAGCATGTTACTAACAATCGGTGCAACTGGCGCCGACAGTCTTCTAGTCACC : 1344814 220 : LeuValPheHisValSerGlyLysLeuAlaSerLeuAlaIleArgIleSerGluIl : 238 |||..!||||||:!!!!!.!!:!!!!!:!!! |||::: |||:::....!.|| LeuThrPheHisLeuCysSerGlnPheSerIleLeuSerSerArgValLysAsnIl 1344815 : TTGACTTTCCATCTTTGCAGTCAATTTTCGATcctgtcgagccgtgtaaaaAATAT : 1344871 239 : eAsnThrGluProGlyValCysLysGlnGluLeuArgSerIleIleIleGluHisA : 257 |:!!..!|||||| ! !! ! ! !:!!:!!!:!:!!:!!:!! !..!||| eAspValGluProGlnLysTyrPheProGlnMetLysAlaLeuValGluArgHisT 1344872 : CGACGTCGAGCCGCAAAAGTATTTCCCACAAATGAAAGCACTCGTTGAACGGCACA : 1344928 258 : spArgLeuLeuLys : 261 !..!||||||::! hrGluLeuLeuArg 1344929 : CCGAACTTCTACGG : 1344942 vulgar: gi|861722468|gb|AKO89992.1| 163 261 . KQ414782.1 1344648 1344942 + 148 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1344649 1344942 148 + . gene_id 2 ; sequence gi|861722468|gb|AKO89992.1| ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1344649 1344942 . + . KQ414782.1 exonerate:protein2genome:local exon 1344649 1344942 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1344649 1344942 148 + . alignment_id 2 ; Query gi|861722468|gb|AKO89992.1| ; Align 1344649 164 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722465|gb|AKO89991.1| odorant receptor 27 [Microplitis mediator] Target: KQ414782.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold333, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 335 -> 388 Target range: 1345564 -> 1345723 336 : SerLeuArgValGlnGlnHisIleAlaAsnGlyAsnTrpTyrAspIleSerThrLy : 354 |||! !..!:!!|||||| ! ! ! !.!!||||||||||||:!! !! !|| SerSerGluMetGlnGlnAlaCysTyrPheSerAsnTrpTyrAspLeuProAspLy 1345565 : AGTTCTGAAATGCAGCAGGCTTGTTACTTCAGTAATTGGTACGATTTACCAGATAA : 1345619 355 : sSerGlnLysLeuLeuIleLeuMetThrMetArgSerGlnValProCysIleLeuT : 373 |! ! !::!! !||||||!!! ! ! ||||||||| !|||! !|||| sTyrThrArgSerLeuIlePheCysIleAlaArgSerGlnLysProSerTyrLeuT 1345620 : ATACACGCGATCGTTAATATTTTGCATCGCTCGCTCTCAAAAGCCGTCGTACCTAA : 1345676 374 : hrAlaGlyLysIleMetGluLeuSerValGluSerPheGlyMetMet : 388 |||||||||||.!! ! !!!!|||:!!|||!!!||||||!!::!! hrAlaGlyLysPheTyrValPheSerLeuGluThrPheGlyIleVal 1345677 : CAGCTGGCAAGTTCTACGTGTTCTCGTTAGAAACATTCGGCATCGTG : 1345723 vulgar: gi|861722465|gb|AKO89991.1| 335 388 . KQ414782.1 1345564 1345723 + 105 M 53 159 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414782.1 exonerate:protein2genome:local gene 1345565 1345723 105 + . gene_id 1 ; sequence gi|861722465|gb|AKO89991.1| ; gene_orientation . KQ414782.1 exonerate:protein2genome:local cds 1345565 1345723 . + . KQ414782.1 exonerate:protein2genome:local exon 1345565 1345723 . + . insertions 0 ; deletions 0 KQ414782.1 exonerate:protein2genome:local similarity 1345565 1345723 105 + . alignment_id 1 ; Query gi|861722465|gb|AKO89991.1| ; Align 1345565 336 159 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722450|gb|AKO89986.1| odorant receptor 22 [Microplitis mediator] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 100 Query range: 167 -> 221 Target range: 26150 -> 25988 168 : LeuPheHisValGluTyrPheTyrAspLeuGluLysTyrTyrTyrProLeuLeuIleHis : 187 :!!!:!! !.! ! |||||| !||| !!!:||||||:!!||| !:!!:!! ||| ValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHis 26150 : GTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCAT : 26093 188 : SerTyrPheGlyThrMetAlaTyrMetThrValAlaValAlaIleAspSerMetPheMet : 207 ! !|||.!!! !..!:!: ! !!!::!!||| ! !||| !|||:!!! !:!:!! MetTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrVal 26092 : ATGTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTG : 26033 208 : ValTyrValGlnHisAlaCysAlaIlePheAlaValIleGly : 221 ! !|||||||||||||||!.!:!:!!.|||:!! !||| TyrAlaValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 26032 : TACGCCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 25989 vulgar: gi|861722450|gb|AKO89986.1| 167 221 . LHQN01017803.1 26150 25988 - 100 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26150 100 - . gene_id 1 ; sequence gi|861722450|gb|AKO89986.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26150 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26150 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26150 100 - . alignment_id 1 ; Query gi|861722450|gb|AKO89986.1| ; Align 26151 168 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722447|gb|AKO89985.1| odorant receptor 21 [Microplitis mediator] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 144 Query range: 133 -> 212 Target range: 14176 -> 13939 134 : MetLeuIleTyrPheCysMetProIleIleProLysValLeuAspIleValLeuProLeu : 153 :!::!!:!:!:! ! ! ! !|||:!:! !||| ! :!!|||||||||:!!|||||| ! ValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProLys 14176 : GTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAG : 14119 154 : AsnThrThrArgProGluLeuTyrLeuPheGluAlaGluTyrPheValAspGlnHisLys : 173 ||| !:!!||| !! ! !|||:!!!:! !||| ! ||||||..!|||:!!|||||| AsnGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLys 14118 : AACGAGTCACGAGACGTAGCGTACATTTATCCGGCCTATTATTTCACCGACGAGCATAAG : 14059 174 : PheTyrTyrProIleLeuIleHisAlaTyrIleThrCysAlaValAlaValSerMetLeu : 193 !:! !! !|||:!!! ||| ! !..! ! !|||!.! !!! !:!!! ! TyrAspValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyr 14058 : TACGACGTGTACATAATTACGCACATGGCGTCCGTGATCCTTGTGGTGTTTTACGTGTAC : 13999 194 : ValAlaPheAspThrGluTyrAlaIleGlnAlaLeuHisGlySerGlyIlePheSer : 212 ||||||! !||||||...||| ! ! !.!! !||||||!!!|||:!:!!.:!! ValAlaCysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAla 13998 : GTCGCTTGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCC : 13940 vulgar: gi|861722447|gb|AKO89985.1| 133 212 . LHQN01017803.1 14176 13939 - 144 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 13940 14176 144 - . gene_id 1 ; sequence gi|861722447|gb|AKO89985.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 13940 14176 . - . LHQN01017803.1 exonerate:protein2genome:local exon 13940 14176 . - . insertions 0 ; deletions 0 LHQN01017803.1 exonerate:protein2genome:local similarity 13940 14176 144 - . alignment_id 1 ; Query gi|861722447|gb|AKO89985.1| ; Align 14177 134 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722441|gb|AKO89983.1| odorant receptor 19 [Microplitis mediator] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 134 Query range: 129 -> 216 Target range: 18444 -> 18186 130 : AlaTyrMetSerThrThrIlePheValThrGluProIlePheProArgIleValAsnIle : 149 ||||||!!:!!!:!! !:!:|||:!! !! !||| ! !!|||:!:|||||| AlaTyrIleCysSerPheLeuPheIleGlnValProTrpSerThrArgLeuValAsnSer 18444 : GCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCG : 18387 150 : PheValGluThrAsnGluThrIleProLeuLysLeuAlaLeuProLeuGluTyrIleIle : 169 !:! ! ! !||| !||| ! !||| !:!!!.!:!!||| ! ! |||.!!:!! TyrLysThrGlnAsnIleThrProSerLeuProValValValProGlyTyrTyrPheVal 18386 : TACAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTC : 18327 170 : IleAspIleAspLysHisTyrTrpLeuIleLeuThrIleThrAsnIlePheValPheAsn : 189 !!!::!!!!: ! :!!|||!:::!!|||||| ! !||| ! :!!!!.! ! AspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThr---CysThrIleLeuIle 18326 : GACGAAGTAGAATACTATTATTACATCATACTTCACGGAACG---TGCACAATTTTGATT : 18270 190 : IleIleIleValIleIleSerCysAspIleValLeuIleThrPheValGlnHisValCys : 209 :!!:!::!:||| ! !:!!||||||! ! !! !!!:..!.!.|||||||||..!||| ValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCys 18269 : GTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGC : 18210 210 : GlyLeuPheAlaValValGly : 216 |||||||||||||||!.!||| GlyLeuPheAlaValAlaGly 18209 : GGACTGTTCGCCGTGGCCGGG : 18187 vulgar: gi|861722441|gb|AKO89983.1| 129 216 . LHQN01017803.1 18444 18186 - 134 M 54 162 G 1 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18187 18444 134 - . gene_id 1 ; sequence gi|861722441|gb|AKO89983.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18187 18444 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18187 18444 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 18187 18444 134 - . alignment_id 1 ; Query gi|861722441|gb|AKO89983.1| ; Align 18445 130 162 ; Align 18283 185 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722441|gb|AKO89983.1| odorant receptor 19 [Microplitis mediator] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 131 -> 229 Target range: 26240 -> 25949 132 : MetSerThrThrIlePheValThrGluProIlePheProArgIleValAsnIlePheVal : 151 :!:!!!.!!.!!:!!|||:!! ! !|||.!! ! !!! !|||:!!:!!|||.!!:!! LeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMet 26240 : TTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATG : 26183 152 : GluThrAsnGluThrIleProLeuLysLeuAlaLeuProLeuGluTyrIleIleIleAsp : 171 ! !||||||||| ! !!! ! !!!!!.!! !||| ! ||| !.!!:!!||| ProLeuAsnGluThrArgAlaArgLeuPheValTyrPro---AlaTyrTyrPheValAsp 26182 : CCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCA---GCTTACTATTTCGTCGAC : 26126 172 : IleAspLysHisTyrTrpLeuIleLeuThrIleThrAsnIlePheValPheAsnIleIle : 191 ||||||:!!:!!!::||||||:!! ! !! ! !!:!! ! ||| ! ! :!!||| GluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIle 26125 : GAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATC : 26066 192 : IleValIleIleSerCysAspIleValLeuIleThrPheValGlnHisValCysGlyLeu : 211 !|||.!! !:!!|||||| ! !! !:!: ! !|||||||||!.!||||||||| SerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeu 26065 : TCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTG : 26006 212 : PheAlaValValGlyCysArgLeuGluSerThrProPheAspGluAsnTyrLeu : 229 !!.|||:!!!.!|||! !:!!:!!.!! ! !.!.!!:.!...!!:!||| LeuAlaIleAlaGly***LeuValGlnGlyGlnLeuMetGluAsnGlyPheLeu 26005 : TTGGCCATTGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAATGGTTTTCTT : 25950 vulgar: gi|861722441|gb|AKO89983.1| 131 229 . LHQN01017803.1 26240 25949 - 113 M 33 99 G 1 0 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25950 26240 113 - . gene_id 2 ; sequence gi|861722441|gb|AKO89983.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25950 26240 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25950 26240 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25950 26240 113 - . alignment_id 2 ; Query gi|861722441|gb|AKO89983.1| ; Align 26241 132 99 ; Align 26142 166 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722441|gb|AKO89983.1| odorant receptor 19 [Microplitis mediator] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 119 -> 216 Target range: 29658 -> 29370 120 : AsnPhePheSerMetGlyTyrAlaGlyLeuAlaTyrMetSerThrThrIlePheValThr : 139 ...||| |||::: ! !|||!.! !!.! !.!.!!! !..!:!!|||..!.!! ThrPheSerSerLeuTyrValAlaAlaAsnGlyIlePheCysTyrValLeuPheThrAla 29658 : acattttcttctctataTGTCGCAGCAAATGGAATCTTCTGCTACGTTCTCTTCACCGCA : 29601 140 : GluProIlePheProArgIleValAsnIlePheValGluThrAsnGluThrIleProLeu : 159 ! ! !!||| !||||||:!!:!!:!!:!!.!! ! !! !||||||:!! ! !:!! ValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGluSerArgGlyVal 29600 : GTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAACGAATCGCGCGGAGTG : 29541 160 : LysLeuAlaLeuProLeuGluTyrIleIleIleAspIleAspLysHisTyrTrpLeuIle : 179 !!! !! !||| !.!.||| !:!!||| !!!::!!||||||!::! !:!: GlyPheIleTyrProAlaAsnTyr---GlyValAspGluGluGluHisTyrTyrTyrLeu 29540 : GGCTTCATTTATCCTGCCAACTAC---GGCGTCGACGAAGAGGAGCATTACTACTATCTG : 29484 180 : LeuThrIleThrAsnIlePheValPheAsnIleIleIleValIleIleSerCysAspIle : 199 :!! ! !! ! ! ! ! :!! ! !:!:.!!.!!||| !||||||||||||! MetGlyHisMetLeuSerValIleThrValValPhePheValTyrIleSerCysAspThr 29483 : ATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTACATCTCCTGTGACACG : 29424 200 : ValLeuIleThrPheValGlnHisValCysGlyLeuPheAlaValValGly : 216 :!!! !!!:!.!.!!|||||||||!.!|||||||||!!. !:!! !||| IleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeuSerGly 29423 : ATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTCTCTGGG : 29371 vulgar: gi|861722441|gb|AKO89983.1| 119 216 . LHQN01017803.1 29658 29370 - 105 M 48 144 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29371 29658 105 - . gene_id 3 ; sequence gi|861722441|gb|AKO89983.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29371 29658 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29371 29658 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 29371 29658 105 - . alignment_id 3 ; Query gi|861722441|gb|AKO89983.1| ; Align 29659 120 144 ; Align 29515 169 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722462|gb|AKO89990.1| odorant receptor 26 [Microplitis mediator] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 129 -> 216 Target range: 18444 -> 18186 130 : AlaTyrMetSerAlaThrIlePheValLeuGluProValPheProArgIleLeuAsnVal : 149 ||||||!!:!!!:!! !:!:|||:!!! !! !||| !! !!|||:!::!!||| ! AlaTyrIleCysSerPheLeuPheIleGlnValProTrpSerThrArgLeuValAsnSer 18444 : GCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGTCGACCCGATTGGTGAACTCG : 18387 150 : PheIleSerValAsnAlaThrAspProPheLysLeuAlaLeuProLeuGluTyrIleIle : 169 !:!! !!! !||| !||| !!!. !:!!!.!:!!||| ! !||| !.!! TyrLysThrGlnAsnIleThrProSerLeuProValValValPro---GlyTyrTyrPhe 18386 : TACAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCC---GGATATTACTTC : 18330 170 : IleAspArgGluLysHisTyrTrpIleMetLeuPheValSerThrValPheValTyrAsn : 189 :!!|||..!! !:!!:!!|||!:: !!!::!!.!! !.!!||| ! :!!! ! ! ValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrIleLeuIle 18329 : GTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAATTTTGATT : 18270 190 : IleIleIleValLeuValSerCysAspIleMetTyrIleThrPheValGlnHisValCys : 209 :!!:!::!:|||! ! !:!!||||||! !! |||!!:..!.!.|||||||||..!||| ValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCys 18269 : GTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGC : 18210 210 : GlyLeuPheAlaValValGly : 216 |||||||||||||||!.!||| GlyLeuPheAlaValAlaGly 18209 : GGACTGTTCGCCGTGGCCGGG : 18187 vulgar: gi|861722462|gb|AKO89990.1| 129 216 . LHQN01017803.1 18444 18186 - 139 M 35 105 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 18187 18444 139 - . gene_id 1 ; sequence gi|861722462|gb|AKO89990.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 18187 18444 . - . LHQN01017803.1 exonerate:protein2genome:local exon 18187 18444 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 18187 18444 139 - . alignment_id 1 ; Query gi|861722462|gb|AKO89990.1| ; Align 18445 130 105 ; Align 18340 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722462|gb|AKO89990.1| odorant receptor 26 [Microplitis mediator] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 113 Query range: 131 -> 216 Target range: 26240 -> 25988 132 : MetSerAlaThrIlePheValLeuGluProValPheProArgIleLeuAsnValPheIle : 151 :!:!!!|||.!!:!!|||:!!! ! !||| !! ! !!! !||||||:!!:!!.!!!!: LeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMet 26240 : TTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATG : 26183 152 : SerValAsnAlaThrAspProPheLysLeuAlaLeuProLeuGluTyrIleIleIleAsp : 171 !!:!!|||! !||| !! !!!!!.!! !||| ! ||| !.!!:!!||| ProLeuAsnGluThrArgAlaArgLeuPheValTyrPro---AlaTyrTyrPheValAsp 26182 : CCGTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCA---GCTTACTATTTCGTCGAC : 26126 172 : ArgGluLysHisTyrTrpIleMetLeuPheValSerThrValPheValTyrAsnIleIle : 191 ..!!!:|||:!!:!!!:::!:!!::!! !! ! !:!! ! ||| ! :!!||| GluAspLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIle 26125 : GAGGACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATC : 26066 192 : IleValLeuValSerCysAspIleMetTyrIleThrPheValGlnHisValCysGlyLeu : 211 !|||!!! !:!!|||||| !! |||:!: ! !|||||||||!.!||||||||| SerValPheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeu 26065 : TCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTG : 26006 212 : PheAlaValValGly : 216 !!.|||:!!!.!||| LeuAlaIleAlaGly 26005 : TTGGCCATTGCAGGG : 25989 vulgar: gi|861722462|gb|AKO89990.1| 131 216 . LHQN01017803.1 26240 25988 - 113 M 33 99 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 25989 26240 113 - . gene_id 2 ; sequence gi|861722462|gb|AKO89990.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 25989 26240 . - . LHQN01017803.1 exonerate:protein2genome:local exon 25989 26240 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 25989 26240 113 - . alignment_id 2 ; Query gi|861722462|gb|AKO89990.1| ; Align 26241 132 99 ; Align 26142 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722462|gb|AKO89990.1| odorant receptor 26 [Microplitis mediator] Target: LHQN01017803.1 Habropoda laboriosa contig17803, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 134 -> 216 Target range: 29613 -> 29370 135 : ThrIlePheValLeuGluProValPheProArgIleLeuAsnValPheIleSerValAsn : 154 ..!:!!|||..! !! ! !!:!! !||||||:!!|||:!!:!!.!! !! !||| ValLeuPheThrAlaValAlaIleThrProArgValLeuAspLeuIleSerProLysAsn 29613 : GTTCTCTTCACCGCAGTGGCGATTACCCCTCGTGTTCTCGACCTTATTTCGCCGAAAAAC : 29556 155 : AlaThrAspProPheLysLeuAlaLeuProLeuGluTyrIleIleIleAspArgGluLys : 174 ! !:!! ! ! ! !!! !! !||| !.!.||| !:!!|||..!|||:!! GluSerArgGlyValGlyPheIleTyrProAlaAsnTyr---GlyValAspGluGluGlu 29555 : GAATCGCGCGGAGTGGGCTTCATTTATCCTGCCAACTAC---GGCGTCGACGAAGAGGAG : 29499 175 : HisTyrTrpIleMetLeuPheValSerThrValPheValTyrAsnIleIleIleValLeu : 194 ||||||!:: !:!!:!! ! !! ! ! ! ! :!! ! !:!:.!!.!!|||! ! HisTyrTyrTyrLeuMetGlyHisMetLeuSerValIleThrValValPhePheValTyr 29498 : CATTACTACTATCTGATGGGTCACATGCTTTCCGTGATAACTGTCGTGTTTTTCGTCTAC : 29439 195 : ValSerCysAspIleMetTyrIleThrPheValGlnHisValCysGlyLeuPheAlaVal : 214 :!!|||||||||! !!:|||!!:!.!.!!|||||||||!.!|||||||||!!. !:!! IleSerCysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnLeu 29438 : ATCTCCTGTGACACGATCTACATGAATATCGTGCAACACGCGTGTGGATTATTGAACCTC : 29379 215 : ValGly : 216 !||| SerGly 29378 : TCTGGG : 29371 vulgar: gi|861722462|gb|AKO89990.1| 134 216 . LHQN01017803.1 29613 29370 - 106 M 33 99 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01017803.1 exonerate:protein2genome:local gene 29371 29613 106 - . gene_id 3 ; sequence gi|861722462|gb|AKO89990.1| ; gene_orientation . LHQN01017803.1 exonerate:protein2genome:local cds 29371 29613 . - . LHQN01017803.1 exonerate:protein2genome:local exon 29371 29613 . - . insertions 0 ; deletions 1 LHQN01017803.1 exonerate:protein2genome:local similarity 29371 29613 106 - . alignment_id 3 ; Query gi|861722462|gb|AKO89990.1| ; Align 29614 135 99 ; Align 29515 169 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722444|gb|AKO89984.1| odorant receptor 20 [Microplitis mediator] Target: KQ414784.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold212, whole genome shotgun sequence Model: protein2genome:local Raw score: 127 Query range: 294 -> 371 Target range: 4394989 -> 4395217 295 : LeuLeuAsnThrIleAspGluLeuAsnAlaCysPheSerSerCysMetLeuMetGl : 313 |||! !!:!..!:!::!!!:::::||| ...::: ! !!!:!!!||||| LeuTyrSerValValAsnAspValAsnAsnLeuLeuThrProIleIlePheMetGl 4394990 : TTATACAGCGTTGTGAACGacgtgaataatttattaacaccCATCATTTTCATGCA : 4395044 314 : nLeuPheAlaSerPheSerMetIleCysLeuThrGlyPheGlnAlaValLeuGlyA : 332 ||||.!!.!!||| ! ! !|||||||||!:!|||||| ||||||:!!! ! nLeuLeuThrSerGlyIleGluIleCysLeuSerGlyPhe---AlaValIleAspA 4395045 : ACTTCTTACGAGCGGAATAGAGATTTGTTTGAGTGGATTC---GCGGTGATCGATA : 4395098 333 : laThrThrLysThrSerLeuIleLysPheValLeuTyrLeuGlyAlaAlaPheSer : 350 ! !||| |||..!|||:!!|||||||||! !|||||| !:!! ! ! snGlyThrGlyThrAspLeuLeuLysPheValSerTyrLeuThrSerMetGlyVal 4395099 : ACGGCACCGGTACCGATCTTCTCAAATTTGTGTCTTATTTAACCTCGATGGGGGTG : 4395152 351 : GlnLeuLeuTyrTrpCysTrpPheGlyAsnGluLeuLeuTyrGluValPheIleLe : 369 ||||||||| ||||||||| !|||.!. |||:!! ! ||| !!!. !:! GlnLeuLeuLeuTrpCysTrpProGlyGluIleLeuValGlnGluSerLeuGluIl 4395153 : CAACTTTTGCTATGGTGTTGGCCTGGTGAAATTCTCGTTCAAGAGAGTTTAGAAAT : 4395209 370 : uProHis : 371 ! !||| eGlyHis 4395210 : AGGTCAT : 4395217 vulgar: gi|861722444|gb|AKO89984.1| 294 371 . KQ414784.1 4394989 4395217 + 127 M 32 96 G 1 0 M 44 132 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414784.1 exonerate:protein2genome:local gene 4394990 4395217 127 + . gene_id 1 ; sequence gi|861722444|gb|AKO89984.1| ; gene_orientation . KQ414784.1 exonerate:protein2genome:local cds 4394990 4395217 . + . KQ414784.1 exonerate:protein2genome:local exon 4394990 4395217 . + . insertions 0 ; deletions 1 KQ414784.1 exonerate:protein2genome:local similarity 4394990 4395217 127 + . alignment_id 1 ; Query gi|861722444|gb|AKO89984.1| ; Align 4394990 295 96 ; Align 4395086 328 132 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722468|gb|AKO89992.1| odorant receptor 28 [Microplitis mediator] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 121 Query range: 328 -> 397 Target range: 34375 -> 34665 329 : IleThrGluSerPheLysValCysGluAlaTyrTyrAspCysLeuTrpTyrLysMetPro : 348 ||| !:!!||| :!!:!! !!.!.:!! !|||!!:! !||||||!!.:!: !! IlePheGlnSerArgGluMetSerAsnSerAlaTyrGluSerAsnTrpTyrAsnValSer 34376 : ATATTTCAGAGCAGAGAAATGAGCAATTCCGCTTACGAGTCAAACTGGTACAACGTCTCA : 34433 349 : LysGluSerSerLysThrIleValLeuCysMetAlaArgSerGlnLysProLeuGlyLeu : 368 !..!:!!||| !:!!:!!!!! !||| !|||!!! :::|||||| !!||| ProProGluAlaLysCysLeuLeuPheIleMetHisArgThrAlaArgProLeuCysLeu 34434 : CCTCCAGAAGCCAAGTGCCTTTTATTTATCATGCACAGAACCGCTCGTCCACTTTGCTTG : 34493 369 : ThrAlaGlyLysPheGlyAlaPheCysLeuSerThrLeuThrAsp >>>> Target I : 384 |||||||||||||||.!!.!!|||! !:!!..!! !!!!!:! ! 83 ThrAlaGlyLysPheSerThrPheSerMetGluMetPheSerThr++ 34494 : ACTGCAGGAAAATTCAGTACCTTCTCCATGGAAATGTTCAGTACTgt............. : 34543 385 : ntron 1 >>>> ValValLysThrAlaMetAlaTyrLeuSerValLeuArgThr : 397 bp ::::!!||||||||||||!.!|||||||||||||||! !||| ++IleLeuLysThrAlaMetGlyTyrLeuSerValLeuLeuThr 34544 : ............agattcTGAAAACAGCAATGGGATATCTTTCAGTTCTCCTCACA : 34665 vulgar: gi|861722468|gb|AKO89992.1| 328 397 . KQ414804.1 34375 34665 + 121 M 55 165 5 0 2 I 0 79 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 34376 34665 121 + . gene_id 1 ; sequence gi|861722468|gb|AKO89992.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 34376 34540 . + . KQ414804.1 exonerate:protein2genome:local exon 34376 34540 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 34541 34542 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 34541 34623 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 34622 34623 . + . intron_id 0 ; splice_site "ag" KQ414804.1 exonerate:protein2genome:local cds 34624 34665 . + . KQ414804.1 exonerate:protein2genome:local exon 34624 34665 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 34376 34665 121 + . alignment_id 1 ; Query gi|861722468|gb|AKO89992.1| ; Align 34376 329 165 ; Align 34624 384 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722468|gb|AKO89992.1| odorant receptor 28 [Microplitis mediator] Target: KQ414804.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold473, whole genome shotgun sequence Model: protein2genome:local Raw score: 114 Query range: 331 -> 395 Target range: 39965 -> 40235 332 : SerPheLysValCysGluAlaTyrTyrAspCysLeuTrpTyrLysMetProLysGluSer : 351 ||| ! !:!! !!:!!:!! ||||||||| !|||||| ! :!:||| !:!! ! SerThrGlyIleGlyGlnSerAlaTyrAspCysAsnTrpTyrAspLeuProProLysHis 39966 : agTACTGGAATTGGCCAATCTGCATACGACTGTAACTGGTACGATTTACCACCGAAGCAT : 40023 352 : SerLysThrIleValLeuCysMetAlaArgSerGlnLysProLeuGlyLeuThrAlaGly : 371 :!! :!!:!!|||:!! !!:..!|||:!!||| ! !!!!! !:!!||||||||| AlaValSerLeuValIleValIleCysArgAlaGlnValSerPheGlnIleThrAlaGly 40024 : GCTGTTTCGTTAGTTATCGTGATATGTCGCGCGCAAGTGTCCTTTCAAATAACCGCTGGA : 40083 372 : LysPheGlyAlaPheCysLeuSerThrLeuThrAsp >>>> Target Intron 1 > : 384 ||||||.!! !!|||! !|||..! !!!!!.!! ! 78 bp LysPheSerProPheSerLeuGluLeuPheAsnAla++ 40084 : AAATTCAGTCCCTTTTCTCTCGAGCTGTTTAACGCTgt...................... : 40124 385 : >>> ValValLysThrAlaMetAlaTyrLeuSerValLeu : 395 |||:!!||||||:!! !.!||||||||||||||| ++ValLeuLysThrSerAlaGlyTyrLeuSerValLeu 40125 : ...agGTTTTAAAAACGTCTGCTGGATATCTTTCCGTGTTG : 40235 vulgar: gi|861722468|gb|AKO89992.1| 331 395 . KQ414804.1 39965 40235 + 114 M 52 156 5 0 2 I 0 74 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414804.1 exonerate:protein2genome:local gene 39966 40235 114 + . gene_id 2 ; sequence gi|861722468|gb|AKO89992.1| ; gene_orientation + KQ414804.1 exonerate:protein2genome:local cds 39966 40121 . + . KQ414804.1 exonerate:protein2genome:local exon 39966 40121 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local splice5 40122 40123 . + . intron_id 1 ; splice_site "GT" KQ414804.1 exonerate:protein2genome:local intron 40122 40199 . + . intron_id 1 KQ414804.1 exonerate:protein2genome:local splice3 40198 40199 . + . intron_id 0 ; splice_site "AG" KQ414804.1 exonerate:protein2genome:local cds 40200 40235 . + . KQ414804.1 exonerate:protein2genome:local exon 40200 40235 . + . insertions 0 ; deletions 0 KQ414804.1 exonerate:protein2genome:local similarity 39966 40235 114 + . alignment_id 2 ; Query gi|861722468|gb|AKO89992.1| ; Align 39966 332 156 ; Align 40200 384 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722447|gb|AKO89985.1| odorant receptor 21 [Microplitis mediator] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 117 -> 215 Target range: 457123 -> 457417 118 : AspGlyLysLysLeuSerGlnPheTyrAlaSerTyrMetTyrAlaThrMetLeuIleT : 137 ::: |||||| ..!.!. !.!! !! !! |||..! ! |||:!! AsnAspLysLysLysProSerMetIleThrValSerThrTyrCysGlyAlaLeuValI 457124 : aatgataaaaaaaaaccttcGATGATTACAGTTTCTACTTATTGTGGCGCACTGGTTA : 457181 138 : yrPheCysMetProIleIleProLysValLeuAspIleValLeuProLeuAsnThrTh : 156 ! ! :!!! !:!!.!!|||! !:!!||||||||||||:!!||||||||| !:! leThrThrLeuGlnLeuPheProIleLeuLeuAspIleValValProLeuAsnGluSe 457182 : TTACCACGTTGCAACTCTTTCCGATATTACTCGACATTGTGGTCCCATTGAACGAATC : 457238 157 : rArgProGluLeuTyrLeuPheGluAlaGluTyrPheValAspGlnHisLysPheTyr : 175 !|||||| !! ! !.!! !||||||||||||||||||..! ! |||!:! rArgProCysGluLeuTyrLeuThrAlaGluTyrPheValAspMetLysLysTyrMet 457239 : ACGCCCCTGTGAGTTATACCTTACAGCGGAATACTTTGTCGACATGAAAAAGTATATG : 457295 176 : TyrProIleLeuIleHisAlaTyrIleThrCysAlaValAlaValSerMetLeuValA : 195 :!! !|||:!! ||| ! !! ! !:!!|||!.!!!!! !|||..!| HisTyrIleIleAlaHisIleIleThrCysLeuLeuIleAlaAlaThrThrLeuThrA 457296 : CATTATATCATCGCGCACATTATCACGTGCCTACTGATCGCGGCTACCACGTTAACAG : 457355 196 : laPheAspThrGluTyrAlaIleGlnAlaLeuHisGlySerGlyIlePheSerAlaLe : 214 || !!!::!! ! ! !! .!.!.!||||||! !!!!|||:!:|||!.! ! laAsnGluSerLeuLeuIleThrAsnValLeuHisValCysGlyLeuPheLysLeuTh 457356 : CTAACGAATCCTTACTTATAACGAACGTACTGCACGTTTGTGGATTGTTCAAGCTTAC : 457412 215 : uArg : 215 !||| rArg 457413 : TAGG : 457417 vulgar: gi|861722447|gb|AKO89985.1| 117 215 . KQ414815.1 457123 457417 + 132 M 98 294 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457124 457417 132 + . gene_id 1 ; sequence gi|861722447|gb|AKO89985.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457124 457417 . + . KQ414815.1 exonerate:protein2genome:local exon 457124 457417 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 457124 457417 132 + . alignment_id 1 ; Query gi|861722447|gb|AKO89985.1| ; Align 457124 118 294 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722447|gb|AKO89985.1| odorant receptor 21 [Microplitis mediator] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 125 Query range: 126 -> 215 Target range: 481974 -> 482241 127 : AlaSerTyrMetTyrAlaThrMetLeuIleTyrPheCysMetProIleIleProLysV : 146 ...::!! !!:||| !!:!!:!!|||||| .!. ! !!!: ! | ThrAlaLeuIleTyrProSerValLeuIleLeuIleLeuCysHisMetSerSerPheV 481975 : acagcGTTAATTTATCCATCGGTGTTGATACTGATACTGTGCCATATGTCGAGTTTCG : 482032 147 : alLeuAspIleValLeuProLeuAsnThrThrArgProGluLeuTyrLeuPheGluAl : 165 ||||||||:!!:!!:!!||||||||| !|||||| !!.!.! !!:!! ! ! ..! alLeuAspValIleValProLeuAsnGluThrArgThrHisGlnPheProValSerMe 482033 : TTCTAGACGTCATTGTTCCTCTAAACGAGACTCGTACGCACCAATTTCCAGTATCAAT : 482089 166 : aGluTyrPheValAspGlnHisLysPheTyrTyrProIleLeuIleHisAlaTyrIle : 184 !|||||||||:!!||||||!!.|||!:!! ! !||| !.!!||| !!::.!! tGluTyrPheIleAspGlnGlnLysTyrSerLeuPheIleThrPheHisGlnTrpPhe 482090 : GGAGTACTTCATTGACCAGCAGAAATATTCACTTTTCATTACGTTTCATCAGTGGTTT : 482146 185 : ThrCysAlaValAlaValSerMetLeuValAlaPheAspThrGluTyrAlaIleGlnA : 204 :!!! ! !|||!.!!.!!!!!!::!!|||!.!.!.!!:||| ! !!.!!!: ! SerPheLeuValValAlaThrIleIleValGlyIleGluThrLeuIleValMetTrpL 482147 : TCCTTTCTCGTAGTCGCAACGATCATTGTCGGGATAGAGACTTTGATTGTTATGTGGC : 482206 205 : laLeuHisGlySerGlyIlePheSerAlaLeuArg : 215 ! !|||!.!:!!.!!:!:|||!!! !:!!||| euGluHisAlaAlaSerLeuPheThrLeuValArg 482207 : TTGAACACGCTGCAAGCTTGTTCACCCTTGTAAGG : 482241 vulgar: gi|861722447|gb|AKO89985.1| 126 215 . KQ414815.1 481974 482241 + 125 M 89 267 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 481975 482241 125 + . gene_id 2 ; sequence gi|861722447|gb|AKO89985.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 481975 482241 . + . KQ414815.1 exonerate:protein2genome:local exon 481975 482241 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 481975 482241 125 + . alignment_id 2 ; Query gi|861722447|gb|AKO89985.1| ; Align 481975 127 267 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722447|gb|AKO89985.1| odorant receptor 21 [Microplitis mediator] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 128 -> 212 Target range: 471555 -> 471807 129 : TyrMetTyrAlaThrMetLeuIleTyrPheCysMetProIleIleProLysValLeuA : 148 ||| ! !:!::!!! ! ! ! :!! !!!!: ||| :!!|||| TyrTyrThrAsnLeuLeuIleThrSerValIleLeuSerMetSerProLeuIleLeuA 471556 : TATTACACGAATCTACTCATTACTAGTGTAATACTGTCCATGTCGCCTCTTATTCTCG : 471613 149 : spIleValLeuProLeuAsnThrThrArgProGluLeuTyrLeuPheGluAlaGluTy : 167 |||||:!!:!!||||||||||||:!!||||||...! !!:!! !||| ! !!!:!: spIleIleIleProLeuAsnThrSerArgProArgTyrPheProPheThrPheAspPh 471614 : ATATTATAATACCTCTGAACACGTCACGTCCACGTTACTTTCCATTTACGTTCGATTT : 471670 168 : rPheValAspGlnHisLysPheTyrTyrProIleLeuIleHisAlaTyrIleThrCys : 186 !.!! !:!!|||.!.:!!!:!!:!!! |||||| !||| !:!! !||| !||| eIleProAsnGlnGluGluTyrPhe***ProIleThrIlePheSerGlyIleLeuCys 471671 : CATTCCCAATCAAGAGGAATACTTCTAACCGATTACTATCTTTTCTGGCATATTGTGC : 471727 187 : AlaValAlaValSerMetLeuValAlaPheAspThrGluTyrAlaIleGlnAlaLeuH : 206 ! !!.!:!!:!! :!!:!!::! !!!: ! ! ! !!!:.!.!.!|||| IleCysGlyLeuAlaAlaMetIleSerSerGluGlyLeuLeuMetMetAsnValLeuH 471728 : ATTTGTGGATTAGCAGCAATGATAAGTAGCGAGGGTCTGCTTATGATGAATGTTTTAC : 471787 207 : isGlySerGlyIlePheSer : 212 ||! ! !!|||:!:!:!!:! isValArgGlyLeuTyrAsn 471788 : ACGTACGTGGATTGTATAAC : 471807 vulgar: gi|861722447|gb|AKO89985.1| 128 212 . KQ414815.1 471555 471807 + 118 M 84 252 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 471556 471807 118 + . gene_id 3 ; sequence gi|861722447|gb|AKO89985.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 471556 471807 . + . KQ414815.1 exonerate:protein2genome:local exon 471556 471807 . + . insertions 0 ; deletions 0 KQ414815.1 exonerate:protein2genome:local similarity 471556 471807 118 + . alignment_id 3 ; Query gi|861722447|gb|AKO89985.1| ; Align 471556 129 252 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722465|gb|AKO89991.1| odorant receptor 27 [Microplitis mediator] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 129 -> 215 Target range: 457159 -> 457414 130 : ValTyrAlaAlaThrValGlnPheIleThrGluProValLeuProIleIleLeuAsnA : 149 ..!|||..!!.!.!!:!! .!!! !||| !! !:!!!!!||||||:!!|||:!!! ThrTyrCysGlyAlaLeuValIleThrThrLeuGlnLeuPheProIleLeuLeuAspI 457160 : ACTTATTGTGGCGCACTGGTTATTACCACGTTGCAACTCTTTCCGATATTACTCGACA : 457217 150 : snIleLeuArgThrAsnLeuSerAlaProHisLysPheAlaAspProMetGluTrpIl : 168 !:!::!!! ! !||| !||| !||| !:!!!!. ! ! !! !|||!:: leValValProLeuAsnGluSerArgProCysGluLeuTyrLeuThrAlaGluTyr-- 457218 : TTGTGGTCCCATTGAACGAATCACGCCCCTGTGAGTTATACCTTACAGCGGAATAC-- : 457274 169 : eIleIleAspLysGluLysTyrTyrTrpIleLeuLeuSerAsnSerSerValCysIle : 187 .!!:!!|||! !:!!|||||| !:!!:!!:!!:!!! !! !..!|||:!! -PheValAspMetLysLysTyrMetHisTyrIleIleAlaHisIleIleThrCysLeu 457275 : -TTTGTCGACATGAAAAAGTATATGCATTATATCATCGCGCACATTATCACGTGCCTA : 457328 188 : MetValIleLeuThrValLeuIleSerTyrAspValIlePheIleThrPheValTyrH : 207 :!!:!! !|||..!|||! !:!! !!!!: !:!!.!!|||||| !||| | LeuIleAlaAlaThrThrLeuThrAlaAsnGluSerLeuLeuIleThrAsnValLeuH 457329 : CTGATCGCGGCTACCACGTTAACAGCTAACGAATCCTTACTTATAACGAACGTACTGC : 457388 208 : isAlaCysGlyLeuPheAlaIleThr : 215 ||!.!|||||||||||| !:!!||| isValCysGlyLeuPheLysLeuThr 457389 : ACGTTTGTGGATTGTTCAAGCTTACT : 457414 vulgar: gi|861722465|gb|AKO89991.1| 129 215 . KQ414815.1 457159 457414 + 105 M 38 114 G 1 0 M 47 141 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 457160 457414 105 + . gene_id 1 ; sequence gi|861722465|gb|AKO89991.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 457160 457414 . + . KQ414815.1 exonerate:protein2genome:local exon 457160 457414 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 457160 457414 105 + . alignment_id 1 ; Query gi|861722465|gb|AKO89991.1| ; Align 457160 130 114 ; Align 457274 169 141 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722441|gb|AKO89983.1| odorant receptor 19 [Microplitis mediator] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 101 Query range: 145 -> 216 Target range: 485722 -> 485932 146 : IleValAsnIlePheValGluThrAsnGluThrIleProLeuLysLeuAlaLeuProL : 165 |||:!!:!!|||!!.:!! !||| ! ||| !|||! !! !:!! !!:!! !! IleLeuAspIleLeuIleProLeuAsnTyrThrArgProArgThrIleProIleAsnS 485723 : ATTCTGGACATTTTGATTCCTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACT : 485780 166 : euGluTyrIleIleIleAspIleAspLysHisTyrTrpLeuIleLeuThrIleThrAs : 184 !|||:!! .!!:!!||| .!.|||:!!!:!!::! !||| !.!! !..! erGluHis---PheValAspGlnGlnLysTyrPheTyrProIleAlaAlaHisValVa 485781 : CGGAACAT---TTTGTCGATCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGT : 485834 185 : nIlePheValPheAsnIleIleIleValIleIleSerCysAspIleValLeuIleThr : 203 !:!!||||||.!!! ! ! ||||||:!!:!!||| :::|||:::::::::.!! lLeuPheValIleIleGlyAlaIleValLeuLeuSerThrGluIleLeuIleMetAla 485835 : TCTCTTCGTCATTATTGGCGCGATAGTATTACTCAGCaccgaaatattaattatggCG : 485891 204 : PheValGlnHisValCysGlyLeuPheAlaValValGly : 216 .!.:!!||||||..!|||||||||!:!.!!:!!|||||| IleIleGlnHisThrCysGlyLeuTyrThrIleValGly 485892 : ATAATACAGCACACCTGTGGTTTGTATACAATCGTTGGG : 485932 vulgar: gi|861722441|gb|AKO89983.1| 145 216 . KQ414815.1 485722 485932 + 101 M 22 66 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485723 485932 101 + . gene_id 1 ; sequence gi|861722441|gb|AKO89983.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485723 485932 . + . KQ414815.1 exonerate:protein2genome:local exon 485723 485932 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 485723 485932 101 + . alignment_id 1 ; Query gi|861722441|gb|AKO89983.1| ; Align 485723 146 66 ; Align 485789 169 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722462|gb|AKO89990.1| odorant receptor 26 [Microplitis mediator] Target: KQ414815.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold469, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 132 -> 216 Target range: 485683 -> 485932 133 : SerAlaThrIlePheValLeuGluProValPheProArgIleLeuAsnValPheIleS : 152 ||| ! !:!:.!.:!!|||! ! !! ! !!!!||||||:!!:!!!!.||| SerLeuLeuValLeuIleLeuGlyIlePheAsnAsnSerIleLeuAspIleLeuIleP 485684 : TCGTTACTTGTGCTGATTCTTGGTATATTTAACAACAGTATTCTGGACATTTTGATTC : 485741 153 : erValAsnAlaThrAspProPheLysLeuAlaLeuProLeuGluTyrIleIleIleAs : 171 !!:!!||| !||| !||| ! !:!! !!:!! !! !|||:!! .!!:!!|| roLeuAsnTyrThrArgProArgThrIleProIleAsnSerGluHis---PheValAs 485742 : CTTTGAATTACACTCGTCCGCGGACGATTCCTATAAACTCGGAACAT---TTTGTCGA : 485795 172 : pArgGluLysHisTyrTrpIleMetLeuPheValSerThrValPheValTyrAsnIle : 190 |!:!:!!|||:!!!:!!:: !!!: ! ! !..!:!!|||||| !! ! ! pGlnGlnLysTyrPheTyrProIleAlaAlaHisValValLeuPheValIleIleGly 485796 : TCAGCAAAAGTATTTCTACCCTATTGCAGCACATGTTGTTCTCTTCGTCATTATTGGC : 485852 191 : IleIleValLeuValSerCysAspIleMetTyrIleThrPheValGlnHisValCysG : 210 |||||||||:!!||| :::|||::: :::.!!.!.:!!||||||..!|||| AlaIleValLeuLeuSerThrGluIleLeuIleMetAlaIleIleGlnHisThrCysG 485853 : GCGATAGTATTACTCAGCaccgaaatattaattatggCGATAATACAGCACACCTGTG : 485912 211 : lyLeuPheAlaValValGly : 216 |||||!:!.!!:!!|||||| lyLeuTyrThrIleValGly 485913 : GTTTGTATACAATCGTTGGG : 485932 vulgar: gi|861722462|gb|AKO89990.1| 132 216 . KQ414815.1 485683 485932 + 105 M 35 105 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414815.1 exonerate:protein2genome:local gene 485684 485932 105 + . gene_id 1 ; sequence gi|861722462|gb|AKO89990.1| ; gene_orientation . KQ414815.1 exonerate:protein2genome:local cds 485684 485932 . + . KQ414815.1 exonerate:protein2genome:local exon 485684 485932 . + . insertions 0 ; deletions 1 KQ414815.1 exonerate:protein2genome:local similarity 485684 485932 105 + . alignment_id 1 ; Query gi|861722462|gb|AKO89990.1| ; Align 485684 133 105 ; Align 485789 169 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722447|gb|AKO89985.1| odorant receptor 21 [Microplitis mediator] Target: KQ414817.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold478, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 122 Query range: 128 -> 214 Target range: 130421 -> 130163 129 : TyrMetTyrAlaThrMetLeuIleTyrPheCysMetProIleIleProLysValLeuA : 148 !:! !:! ! !:!:||| !!:! !!! !:!!! !|||:!!|||:!!:!!|||! PheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuProGlnIleLeuG 130421 : TTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAATTTTAG : 130364 149 : spIleValLeuProLeuAsnThrThrArgProGluLeuTyrLeuPheGluAlaGluTy : 167 !|||:!!! !||||||!.! !! !!.! !!.!. !! ||| !!..!.!!||||| lyIleIleSerProLeuThrGluIleAsnThrAsnLysLeuLeuValArgThrGluTy 130363 : GCATAATTTCACCTCTAACCGAGATCAATACTAACAAATTACTCGTTCGAACCGAATA : 130307 168 : rPheValAspGlnHisLysPheTyrTyrProIleLeuIleHisAlaTyrIleThrCys : 186 |||||||||| ! ! ! !:! !|||! !||| !||||||||| !|||.!! rPheValAspTyrLysAspTyrIleTyrLeuIleThrIleHisAlaThrIleAlaIle 130306 : CTTTGTCGACTACAAAGATTACATTTATCTAATCACGATCCACGCGACTATAGCAATA : 130250 187 : AlaValAlaValSerMetLeuValAlaPheAspThrGluTyrAlaIleGlnAlaLeuH : 206 ! !::!|||!!!|||! !:!!::! !|||! ||| !:!!| MetCysSerValThrMetGlnIleSerSerAspIleLeuAsnAsnIlePheMetMetH 130249 : ATGTGTAGTGTGACTATGCAAATTAGCAGCGATAttttgaataacatatttatGATGC : 130190 207 : isGlySerGlyIlePheSerAlaLeu : 214 || !||||||!!:|||..!!.!:!! isIleSerGlyMetPheGluValIle 130189 : ACATCAGTGGAATGTTCGAGGTAATT : 130164 vulgar: gi|861722447|gb|AKO89985.1| 128 214 . KQ414817.1 130421 130163 - 122 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414817.1 exonerate:protein2genome:local gene 130164 130421 122 - . gene_id 1 ; sequence gi|861722447|gb|AKO89985.1| ; gene_orientation . KQ414817.1 exonerate:protein2genome:local cds 130164 130421 . - . KQ414817.1 exonerate:protein2genome:local exon 130164 130421 . - . insertions 0 ; deletions 0 KQ414817.1 exonerate:protein2genome:local similarity 130164 130421 122 - . alignment_id 1 ; Query gi|861722447|gb|AKO89985.1| ; Align 130422 129 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722450|gb|AKO89986.1| odorant receptor 22 [Microplitis mediator] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 105 Query range: 321 -> 365 Target range: 19536 -> 19891 322 : ArgLysLeuLeuGlnLeuPheIleMetArgSerSerValProCysGlnLeuThrAlaGly : 341 |||||| !|||..!||| !!|||||||||||||||||||||||| ||||||||| !! ArgLysAspLeuMetLeuValIleMetArgSerSerValProCysCysLeuThrAlaArg 19537 : AGGAAAGATTTGATGCTCGTTATCATGAGATCGAGCGTACCTTGTTGCTTGACAGCCAGA : 19594 342 : SerPheTyrThrLeuAsnMetGlnAsnPheSerAla >>>> Target Intron 1 > : 354 .!!|||!:!..!:!!::!:!::!!!..!:!!!!!.! 223 bp GlyPhePheValValSerLeuGluThrTyrThrGly++ 19595 : GGATTCTTCGTCGTGTCTTTAGAAACGTACACAGGGgt...................... : 19635 355 : >>> ValValArgThrSerMetSerTyrPheThrValLeu : 365 |||:!!!!!|||:!! ||||||||||||:!!||| ++ValLeuSerThrAlaAlaSerTyrPheThrLeuLeu 19636 : ...agGTTTTAAGCACCGCAGCCTCATACTTTACGTTGCTG : 19891 vulgar: gi|861722450|gb|AKO89986.1| 321 365 . KQ414828.1 19536 19891 + 105 M 32 96 5 0 2 I 0 219 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 19537 19891 105 + . gene_id 1 ; sequence gi|861722450|gb|AKO89986.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 19537 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19537 19632 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19891 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19891 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 19537 19891 105 + . alignment_id 1 ; Query gi|861722450|gb|AKO89986.1| ; Align 19537 322 96 ; Align 19856 354 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722447|gb|AKO89985.1| odorant receptor 21 [Microplitis mediator] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 102 Query range: 338 -> 388 Target range: 4333 -> 6453 339 : ArgAlaGlySerLysSerLysAsnLeuLeuHisMetMetIleMetArgSerArgIleProCy : 359 |||:!!||| !!! ! !::!!!. !||| .!.:!:||| |||||||||:!!||||| ArgSerGlyArgMetLeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCy 4334 : AGATCTGGGCGAATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTG : 4394 360 : sLysLeuThrAlaGlyLysIleTyrLeuMetSerLeuGluAsnPheThrGly >>>> Tar : 377 | ||||||||| !! !.!!!:!! !:!!|||||||||!..!:!|||..! sCysLeuThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 4395 : CTGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt........ : 4450 378 : get Intron 1 >>>> ValValLysThrSerMetSerTyrPheThrValLeu : 388 1970 bp |||:!!!..|||:!!:!!||||||||||||:!!||| ++ValIleSerThrAlaValSerTyrPheThrLeuLeu 4451 : .................agGTTATAAGTACAGCAGTGTCGTACTTCACACTGTTA : 6453 vulgar: gi|861722447|gb|AKO89985.1| 338 388 . KQ414828.1 4333 6453 + 102 M 38 114 5 0 2 I 0 1966 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 4334 6453 102 + . gene_id 1 ; sequence gi|861722447|gb|AKO89985.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 4334 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4334 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6453 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6453 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 4334 6453 102 + . alignment_id 1 ; Query gi|861722447|gb|AKO89985.1| ; Align 4334 339 114 ; Align 6418 377 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722441|gb|AKO89983.1| odorant receptor 19 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 135 -> 216 Target range: 1224267 -> 1224024 136 : IlePheValThrGluProIlePheProArgIleValAsnIlePheValGluThrAs : 154 :!!!:!:!!!:! |||:!:.!. !! !:!!:!!:!!:!! !!!.! ! !|| ValTyrMetSerPheProLeuIleAsnProValLeuAspValValAlaProLeuAs 1224267 : GTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAA : 1224213 155 : nGluThrIleProLeuLysLeuAlaLeuProLeuGluTyrIleIleIleAspIleA : 173 ||||||| !|||! !!:!||| !||||||:!!...||||||.!!|||||| nGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleAspGluT 1224212 : CGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACGAGT : 1224156 174 : spLysHisTyrTrpLeuIleLeuThrIleThrAsnIlePheValPheAsnIleIle : 191 !!:!!|||!:!!:: !:!: ! ! ! ! !!! ! !|||.!!::! ! yrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSerCysGly 1224155 : ACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGCGGG : 1224102 192 : IleValIleIleSerCysAspIleValLeuIleThrPheValGlnHisValCysGl : 210 !!::!!||||||:!! |||!!::!!! !||||||.!!:!! |||:!!||||| MetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCysGl 1224101 : ATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTGCGG : 1224045 211 : yLeuPheAlaValValGly : 216 ||||||||||||| !||| yLeuPheAlaValCysGly 1224044 : ATTGTTCGCAGTGTGTGGG : 1224025 vulgar: gi|861722441|gb|AKO89983.1| 135 216 . KQ414851.1 1224267 1224024 - 139 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224267 139 - . gene_id 1 ; sequence gi|861722441|gb|AKO89983.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224267 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224267 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224267 139 - . alignment_id 1 ; Query gi|861722441|gb|AKO89983.1| ; Align 1224268 136 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722441|gb|AKO89983.1| odorant receptor 19 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 123 -> 216 Target range: 1243875 -> 1243599 124 : MetGlyTyrAlaGlyLeuAlaTyrMetSerThrThrIlePheValThrGluProIl : 142 :!:..! !:!!||| ! !!:! ! !:!!! !||||||||| ! |||:! ValSerLeuSerGlyThrLeuPheTyrPheSerIleIlePheValLeuPheProLe 1243875 : GTCTCTCTTTCAGGTACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATT : 1243821 143 : ePheProArgIleValAsnIlePheValGluThrAsnGluThrIleProLeuLysL : 161 !.!!|||! !|||:!!:!!:!! !! ! ! !||||||||| ! !!! !! ! uIleProProIleLeuAspValValSerProLeuAsnGluThrArgSerArgIleG 1243820 : AATTCCGCCAATATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAG : 1243764 162 : euAlaLeuProLeuGluTyrIleIleIleAspIleAspLysHisTyrTrpLeuIle : 179 ...::: |||:::||| :!:.!!|||!:::::|||::::::::: ::: luValIleLysLeuGlnTyr---LeuPheAspMetGluLysAsnPheTyrSerLeu 1243763 : aagtaataaaattgcaatac---cTGTTCGACAtggagaagaatttttattcatta : 1243713 180 : LeuThrIleThrAsnIlePheValPheAsnIleIleIleValIleIleSerCysAs : 198 ..! !|||..! ! ! !|||! ! !!!:!!:|||||||||!!! || TyrValTyrThrGlyTrpCysSerPheMetThrMetMetValIleIleThrIleAs 1243712 : tacGTCTACACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGA : 1243656 199 : pIleValLeuIleThrPheValGlnHisValCysGlyLeuPheAlaValValGly : 216 | :!!! !:!:..!.!!:!!!!.|||..!|||||||||||||||||| !||| pAlaLeuTyrValValIleIleHisHisThrCysGlyLeuPheAlaValCysGly 1243655 : CGCGTTATATGTGGTAATCATTCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: gi|861722441|gb|AKO89983.1| 123 216 . KQ414851.1 1243875 1243599 - 125 M 44 132 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243875 125 - . gene_id 2 ; sequence gi|861722441|gb|AKO89983.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243875 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243875 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243875 125 - . alignment_id 2 ; Query gi|861722441|gb|AKO89983.1| ; Align 1243876 124 132 ; Align 1243744 169 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722441|gb|AKO89983.1| odorant receptor 19 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 112 Query range: 135 -> 216 Target range: 1240064 -> 1239821 136 : IlePheValThrGluProIlePheProArgIleValAsnIlePheValGluThrAs : 154 ||||||:::..!! |||||||||||| :::::::!!|||!!. ! !|| IlePheLeuValValProIlePheProProLeuLeuAspIleLeuLysProLeuAs 1240064 : atttttctggTGGTTCcgatttttcctcctcttctggACATTTTAAAACCTTTAAA : 1240010 155 : nGluThrIleProLeuLysLeuAlaLeuProLeuGluTyrIleIleIleAspIleA : 173 ||||||| ! !!! ::: ... :::...|||:!:|||||||||! | nGluThrArgAlaArgGlnLysIlePheLysValAsnTyrLeuIleIleAspArgA 1240009 : CGAAACCCGAGCACgccagaaaatattcaaagttaaTTACCTGATCATTGACAGGG : 1239953 174 : spLysHisTyrTrpLeuIleLeuThrIleThrAsnIlePheValPheAsnIleIle : 191 ||:!!!!. ! !:!!! !! ! ! ! !::! ..!.!!!.!:!! spGluGlnAlaLeuIleThrTyrPheHisLeuSerTrpThrThrIleThrLeuGly 1239952 : ATGAACAAGCTCTGATCACATATTTTCACTTGTCTTGGACAACTATCACTCTTGGG : 1239899 192 : IleValIleIleSerCysAspIleValLeuIleThrPheValGlnHisValCysGl : 210 ||| !:!::!!|||! !!::!::!!! !:!! !.!!:!!!!.|||..! !!|| IleSerValLeuSerSerGluLeuIleTyrValLeuLeuIleHisHisThrSerGl 1239898 : ATATCTGTGCTTAGCTCAGAATTGATATACGTCCTTCTTATTCATCATACCAGCGG : 1239842 211 : yLeuPheAlaValValGly : 216 |||||||||||||!.!||| yLeuPheAlaValAlaGly 1239841 : TCTGTTTGCTGTGGCTGgg : 1239822 vulgar: gi|861722441|gb|AKO89983.1| 135 216 . KQ414851.1 1240064 1239821 - 112 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240064 112 - . gene_id 3 ; sequence gi|861722441|gb|AKO89983.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239822 1240064 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240064 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240064 112 - . alignment_id 3 ; Query gi|861722441|gb|AKO89983.1| ; Align 1240065 136 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722462|gb|AKO89990.1| odorant receptor 26 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 149 Query range: 135 -> 216 Target range: 1224267 -> 1224024 136 : IlePheValLeuGluProValPheProArgIleLeuAsnValPheIleSerValAs : 154 :!!!:!:!! ! |||:!!.!. !! !:!!|||:!!||| !! !!:!!|| ValTyrMetSerPheProLeuIleAsnProValLeuAspValValAlaProLeuAs 1224267 : GTATATATGAGCTTTCCATTGATAAATCCGGTTTTGGATGTTGTTGCGCCGTTAAA : 1224213 155 : nAlaThrAspProPheLysLeuAlaLeuProLeuGluTyrIleIleIleAspArgG : 173 |! !||| ||| !!:!||| !||||||:!!...||||||.!!||||||..! nGluThrArgProArgArgLeuLeuLeuProValSerTyrIlePheIleAspGluT 1224212 : CGAGACCCGACCCCGTAGGCTTTTGCTCCCAGTTAGTTACATATTCATAGACGAGT : 1224156 174 : luLysHisTyrTrpIleMetLeuPheValSerThrValPheValTyrAsnIleIle : 191 ! :!!|||!:!!::! !:!! !||| ! ! !..! !||| !::! ! yrGluHisPheTyrSerValAsnPheHisLeuTyrThrSerValIleSerCysGly 1224155 : ACGAGCATTTTTATAGCGTGAATTTTCACCTATACACCAGCGTGATTTCCTGCGGG : 1224102 192 : IleValLeuValSerCysAspIleMetTyrIleThrPheValGlnHisValCysGl : 210 !!::!!:!!:!!:!! |||!!::!:|||||||||.!!:!! |||:!!||||| MetMetIleIleAlaValAspMetLeuTyrIleThrIleIlePheHisLeuCysGl 1224101 : ATGATGATAATCGCCGTGGATATGTTATACATTACTATCATTTTTCACCTTTGCGG : 1224045 211 : yLeuPheAlaValValGly : 216 ||||||||||||| !||| yLeuPheAlaValCysGly 1224044 : ATTGTTCGCAGTGTGTGGG : 1224025 vulgar: gi|861722462|gb|AKO89990.1| 135 216 . KQ414851.1 1224267 1224024 - 149 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224267 149 - . gene_id 1 ; sequence gi|861722462|gb|AKO89990.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224267 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224267 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224267 149 - . alignment_id 1 ; Query gi|861722462|gb|AKO89990.1| ; Align 1224268 136 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722462|gb|AKO89990.1| odorant receptor 26 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 126 -> 216 Target range: 1243866 -> 1243599 127 : AlaGlyPheAlaTyrMetSerAlaThrIlePheValLeuGluProValPheProAr : 145 :!!||| ! !!:! ! !:!!! !|||||||||||| |||:!!.!!|||! SerGlyThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProPr 1243866 : TCAGGTACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCC : 1243812 146 : gIleLeuAsnValPheIleSerValAsnAlaThrAspProPheLysLeuAlaLeuP : 164 !||||||:!!||| !! ! !!:!!|||! !||| !! ! ! ...::: oIleLeuAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleL 1243811 : AATATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataa : 1243755 165 : roLeuGluTyrIleIleIleAspArgGluLysHisTyrTrpIleMetLeuPheVal : 182 |||:::||| :!:.!!|||! ||||||::::::::: ::: !! ! ysLeuGlnTyr---LeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyr 1243754 : aattgcaatac---cTGTTCGACAtggagaagaatttttattcattatacGTCTAC : 1243704 183 : SerThrValPheValTyrAsnIleIleIleValLeuValSerCysAspIleMetTy : 201 !!! ! !! ! !!:!! ! !!!:!!:|||:!!:!!!!! ||| :!:|| ThrGlyTrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTy 1243703 : ACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATA : 1243647 202 : rIleThrPheValGlnHisValCysGlyLeuPheAlaValValGly : 216 |:!:..!.!!:!!!!.|||..!|||||||||||||||||| !||| rValValIleIleHisHisThrCysGlyLeuPheAlaValCysGly 1243646 : TGTGGTAATCATTCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: gi|861722462|gb|AKO89990.1| 126 216 . KQ414851.1 1243866 1243599 - 125 M 41 123 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243866 125 - . gene_id 2 ; sequence gi|861722462|gb|AKO89990.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243866 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243866 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243866 125 - . alignment_id 2 ; Query gi|861722462|gb|AKO89990.1| ; Align 1243867 127 123 ; Align 1243744 169 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722462|gb|AKO89990.1| odorant receptor 26 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 135 -> 216 Target range: 1240064 -> 1239821 136 : IlePheValLeuGluProValPheProArgIleLeuAsnValPheIleSerValAs : 154 ||||||::::!!! |||:::|||||| :::|||:!!:!!!!.! ! !!:!!|| IlePheLeuValValProIlePheProProLeuLeuAspIleLeuLysProLeuAs 1240064 : atttttctggTGGTTCcgatttttcctcctcttctggACATTTTAAAACCTTTAAA : 1240010 155 : nAlaThrAspProPheLysLeuAlaLeuProLeuGluTyrIleIleIleAspArgG : 173 |! !||| !! ::: ... :::...|||:!:||||||||||||! nGluThrArgAlaArgGlnLysIlePheLysValAsnTyrLeuIleIleAspArgA 1240009 : CGAAACCCGAGCACgccagaaaatattcaaagttaaTTACCTGATCATTGACAGGG : 1239953 174 : luLysHisTyrTrpIleMetLeuPheValSerThrValPheValTyrAsnIleIle : 191 !::!!!!. ! !|||! ! !||| !! !:!! ! ..! !!.!:!! spGluGlnAlaLeuIleThrTyrPheHisLeuSerTrpThrThrIleThrLeuGly 1239952 : ATGAACAAGCTCTGATCACATATTTTCACTTGTCTTGGACAACTATCACTCTTGGG : 1239899 192 : IleValLeuValSerCysAspIleMetTyrIleThrPheValGlnHisValCysGl : 210 ||| !:!!:!!|||! !!::!:!!:|||:!! !.!!:!!!!.|||..! !!|| IleSerValLeuSerSerGluLeuIleTyrValLeuLeuIleHisHisThrSerGl 1239898 : ATATCTGTGCTTAGCTCAGAATTGATATACGTCCTTCTTATTCATCATACCAGCGG : 1239842 211 : yLeuPheAlaValValGly : 216 |||||||||||||!.!||| yLeuPheAlaValAlaGly 1239841 : TCTGTTTGCTGTGGCTGgg : 1239822 vulgar: gi|861722462|gb|AKO89990.1| 135 216 . KQ414851.1 1240064 1239821 - 124 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1239822 1240064 124 - . gene_id 3 ; sequence gi|861722462|gb|AKO89990.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1239822 1240064 . - . KQ414851.1 exonerate:protein2genome:local exon 1239822 1240064 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1239822 1240064 124 - . alignment_id 3 ; Query gi|861722462|gb|AKO89990.1| ; Align 1240065 136 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722465|gb|AKO89991.1| odorant receptor 27 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 125 Query range: 344 -> 403 Target range: 1228542 -> 1228290 345 : AsnGlyAsnTrpTyrAspIleSerThrLysSerGlnLysLeuLeuIleLeuMetTh : 363 ::!..!!..|||||| ! :!!|||.!!|||! !|||::!:!!:!! !:!!||| SerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTyrMetMetGl 1228542 : TCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTACATGATGCA : 1228488 364 : rMetArgSerGlnValProCysIleLeuThrAlaGlyLysIleMetGluLeuSerV : 382 !!!:|||:!!! ! !||||||||||||||||||||| !:!: |||:!!!:!: nIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrGluMetAsnM 1228487 : AATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACGAAATGAACA : 1228431 383 : alGluSerPheGlyMet >>>> Target Intron 1 >>>> MetMetLysT : 391 !!|||!:!|||!.!! 75 bp ! .!.|||| etGluAsnPheAlaAsn++ ++ThrPheLysT 1228430 : TGGAGAACTTTGCAAACgt.........................agACATTCAAAA : 1228329 392 : hrSerGlySerTyrPheThrValLeuLeuSerMetGln : 403 ||!!! !||||||||||||:!!|||:!!|||.!.::! hrCysMetSerTyrPheThrMetLeuMetSerPheArg 1228328 : CGTGCATGTCGTACTTCACAATGCTGATGTCATTTAGG : 1228291 vulgar: gi|861722465|gb|AKO89991.1| 344 403 . KQ414851.1 1228542 1228290 - 125 M 43 129 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228291 1228542 125 - . gene_id 1 ; sequence gi|861722465|gb|AKO89991.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1228414 1228542 . - . KQ414851.1 exonerate:protein2genome:local exon 1228414 1228542 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228412 1228413 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1228339 1228413 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1228339 1228340 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228291 1228338 . - . KQ414851.1 exonerate:protein2genome:local exon 1228291 1228338 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228291 1228542 125 - . alignment_id 1 ; Query gi|861722465|gb|AKO89991.1| ; Align 1228543 345 129 ; Align 1228339 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722465|gb|AKO89991.1| odorant receptor 27 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 345 -> 388 Target range: 1222499 -> 1222370 346 : GlyAsnTrpTyrAspIleSerThrLysSerGlnLysLeuLeuIleLeuMetThrMe : 364 ..!!!.||||||!!::!! !!..!|||.!!|||||||||:!! ! !||| !|| SerLysTrpTyrGluLeuProValLysGlyGlnLysLeuIleTyrThrMetGlnMe 1222499 : TCTAAATGGTACGAACTACCGGTAAAAGGGCAAAAGTTGATTTACACGATGCAAAT : 1222445 365 : tArgSerGlnValProCysIleLeuThrAlaGlyLysIleMetGluLeuSerValG : 383 ||||||| ! !||||||||||||||||||||| !:!: |||:!!!:!:!!| tArgSerIleArgProCysIleLeuThrAlaGlyGlyValHisGluMetAsnIleG 1222444 : GAGGTCCATACGGCCATGTATATTAACAGCAGGAGGAGTGCATGAGATGAACATCG : 1222388 384 : luSerPheGlyMetMet : 388 |||||||||||!!::!: luSerPheGlyIleVal 1222387 : AGAGTTTCGGAATAGTA : 1222371 vulgar: gi|861722465|gb|AKO89991.1| 345 388 . KQ414851.1 1222499 1222370 - 124 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1222371 1222499 124 - . gene_id 2 ; sequence gi|861722465|gb|AKO89991.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1222371 1222499 . - . KQ414851.1 exonerate:protein2genome:local exon 1222371 1222499 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1222371 1222499 124 - . alignment_id 2 ; Query gi|861722465|gb|AKO89991.1| ; Align 1222500 346 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722465|gb|AKO89991.1| odorant receptor 27 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 119 Query range: 344 -> 403 Target range: 1233378 -> 1233126 345 : AsnGlyAsnTrpTyrAspIleSerThrLysSerGlnLysLeuLeuIleLeuMetTh : 363 ::!..!!..|||||| ! :!! !!.!!|||! !|||::!:!!:!! ! !||| SerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTyrThrMetGl 1233378 : TCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTACACGATGCA : 1233324 364 : rMetArgSerGlnValProCysIleLeuThrAlaGlyLysIleMetGluLeuSerV : 382 !!!:|||:!!! ! !||||||:!!|||||||||||| !:!: |||:!!!:!: nIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrGluMetAsnM 1233323 : AATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATGAAATGAACA : 1233267 383 : alGluSerPheGlyMet >>>> Target Intron 1 >>>> MetMetLysT : 391 !!|||!:!|||!.!! 75 bp .!.|||| etGluAsnPheAlaAsn++ ++ThrPheLysT 1233266 : TGGAGAACTTTGCAAACgt.........................agaCATTCAAAA : 1233165 392 : hrSerGlySerTyrPheThrValLeuLeuSerMetGln : 403 ||!!! !||||||||||||:!!|||:!!|||:!:::! hrCysMetSerTyrPheThrMetLeuMetSerLeuArg 1233164 : CGTGCATGTCATACTTCACAATGCTGATGTCACTTAGA : 1233127 vulgar: gi|861722465|gb|AKO89991.1| 344 403 . KQ414851.1 1233378 1233126 - 119 M 43 129 5 0 2 I 0 71 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233127 1233378 119 - . gene_id 3 ; sequence gi|861722465|gb|AKO89991.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233250 1233378 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233378 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233127 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233127 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233127 1233378 119 - . alignment_id 3 ; Query gi|861722465|gb|AKO89991.1| ; Align 1233379 345 129 ; Align 1233175 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722465|gb|AKO89991.1| odorant receptor 27 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 114 Query range: 125 -> 216 Target range: 1224297 -> 1224024 126 : TyrAlaGlyPheValTyrAlaAlaThrValGlnPheIleThrGluProValLeuPr : 144 :::::: :!!!:: !!.! !:!! !!:!!!:!:! |||:!!:!! PheSerAspSerLeuTrpIleValLeuLeuValTyrMetSerPheProLeuIleAs 1224297 : ttttcagactCGTTGTGGATAGTTCTGTTAGTATATATGAGCTTTCCATTGATAAA : 1224243 145 : oIleIleLeuAsnAsnIleLeuArgThrAsnLeuSerAlaProHisLysPheAlaA : 163 ! :!!|||:!! !:!! !! ! !||| !!!! !|||!.!!:!.!! ! nProValLeuAspValValAlaProLeuAsnGluThrArgProArgArgLeuLeuL 1224242 : TCCGGTTTTGGATGTTGTTGCGCCGTTAAACGAGACCCGACCCCGTAGGCTTTTGC : 1224186 164 : spProMetGluTrpIleIleIleAspLysGluLysTyrTyrTrpIleLeuLeuSer : 181 !|||:!:...!::|||.!!||||||:!! ! :!!:!!!:!!::! !:!! !! ! euProValSerTyrIlePheIleAspGluTyrGluHisPheTyrSerValAsnPhe 1224185 : TCCCAGTTAGTTACATATTCATAGACGAGTACGAGCATTTTTATAGCGTGAATTTT : 1224132 182 : AsnSerSerValCysIleMetValIleLeuThrValLeuIleSerTyrAspValIl : 200 :!! !! !..! !!:!:!!: ! ! !! !:!!:!!|||:!! |||:!!:! HisLeuTyrThrSerValIleSerCysGlyMetMetIleIleAlaValAspMetLe 1224131 : CACCTATACACCAGCGTGATTTCCTGCGGGATGATGATAATCGCCGTGGATATGTT : 1224075 201 : ePheIleThrPheValTyrHisAlaCysGlyLeuPheAlaIleThrGly : 216 !!:!||||||.!!:!!!:!||| !|||||||||||||||:!: !||| uTyrIleThrIleIlePheHisLeuCysGlyLeuPheAlaValCysGly 1224074 : ATACATTACTATCATTTTTCACCTTTGCGGATTGTTCGCAGTGTGTGGG : 1224025 vulgar: gi|861722465|gb|AKO89991.1| 125 216 . KQ414851.1 1224297 1224024 - 114 M 91 273 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1224025 1224297 114 - . gene_id 4 ; sequence gi|861722465|gb|AKO89991.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1224025 1224297 . - . KQ414851.1 exonerate:protein2genome:local exon 1224025 1224297 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1224025 1224297 114 - . alignment_id 4 ; Query gi|861722465|gb|AKO89991.1| ; Align 1224298 126 273 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722465|gb|AKO89991.1| odorant receptor 27 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 106 Query range: 126 -> 216 Target range: 1243866 -> 1243599 127 : AlaGlyPheValTyrAlaAlaThrValGlnPheIleThrGluProValLeuProIl : 145 :!!||| !:!!!:! ! !:!!:!! !|||:!! ! |||:!!:!!||| SerGlyThrLeuPheTyrPheSerIleIlePheValLeuPheProLeuIleProPr 1243866 : TCAGGTACTTTGTTCTATTTCTCGATAATATTCGTATTATTTCCATTAATTCCGCC : 1243812 146 : eIleLeuAsnAsnIleLeuArgThrAsnLeuSerAlaProHisLysPheAlaAspP : 164 !||||||:!! !:!!! !! ! !||| !!!! ! !!!..! ! ... oIleLeuAspValValSerProLeuAsnGluThrArgSerArgIleGluValIleL 1243811 : AATATTGGATGTTGTTTCACCGCTTAATGAGACTCGATCTCGGATAGaagtaataa : 1243755 165 : roMetGluTrpIleIleIleAspLysGluLysTyrTyrTrpIleLeuLeuSerAsn : 182 ::::::::: :!:.!!|||! |||||| :::::: ||| ! !! ysLeuGlnTyr---LeuPheAspMetGluLysAsnPheTyrSerLeuTyrValTyr 1243754 : aattgcaatac---cTGTTCGACAtggagaagaatttttattcattatacGTCTAC : 1243704 183 : SerSerValCysIleMetValIleLeuThrValLeuIleSerTyrAspValIlePh : 201 !!!.!! !||| .!.:!!! !:!!! !|||:!!|||!!! |||!.!:!!!: ThrGlyTrpCysSerPheMetThrMetMetValIleIleThrIleAspAlaLeuTy 1243703 : ACTGGCTGGTGCTCGTTCATGACCATGATGGTTATAATCACTATAGACGCGTTATA : 1243647 202 : eIleThrPheValTyrHisAlaCysGlyLeuPheAlaIleThrGly : 216 !:!:..!.!!:!!:!!|||.!!|||||||||||||||:!! !||| rValValIleIleHisHisThrCysGlyLeuPheAlaValCysGly 1243646 : TGTGGTAATCATTCATCACACGTGTGGCTTATTCGCTGTTTGCGGG : 1243600 vulgar: gi|861722465|gb|AKO89991.1| 126 216 . KQ414851.1 1243866 1243599 - 106 M 41 123 G 1 0 M 48 144 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1243600 1243866 106 - . gene_id 5 ; sequence gi|861722465|gb|AKO89991.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1243600 1243866 . - . KQ414851.1 exonerate:protein2genome:local exon 1243600 1243866 . - . insertions 0 ; deletions 1 KQ414851.1 exonerate:protein2genome:local similarity 1243600 1243866 106 - . alignment_id 5 ; Query gi|861722465|gb|AKO89991.1| ; Align 1243867 127 123 ; Align 1243744 169 144 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722447|gb|AKO89985.1| odorant receptor 21 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 199 Query range: 57 -> 212 Target range: 1234737 -> 1234068 58 : AsnLeuAspMetIleIleGluCysIleProMetLeuLeuLeuAspAlaValAsnPh : 76 |||:!!||| :!:|||||||||:!:|||! !:!! !! !|||..!!:! ! AsnMetAspAlaValIleGluCysLeuProAsnGlyIleAlaAlaAlaThrSerVa 1234737 : AATATGGACGCAGTGATCGAGTGTTTGCCGAATGGTATCGCAGCCGCGACCAGCGT : 1234683 77 : eValLysValValAsnGlyPheIleAsnPheArgLys >>>> Target Intro : 89 ||||||:!!:!!|||! !!:!:!!||| ..!!!. 75 bp lValLysLeuLeuAsnValTyrLeuAsnArgGluAsn++ 1234682 : GGTGAAATTGTTGAACGTTTACTTAAACAGGGAAAATgt................. : 1234642 90 : n 1 >>>> MetArgGluLeuPheAspArgIleGlnAspAspTrpGlyLeuAsnT : 104 ...::::::::::::|||! !:!: ! !!:|||! !! ! ++PheGlnLysMetTyrAspLeuValThrArgGluTrpGluGlnLeuA 1234641 : ........agtttcaaaaaatgtatgaTCTTGTGACAAGAGAGTGGGAGCAGTTGA : 1234524 105 : yrSerLysArgGluPheGluIleMetGlnAsnTyrAlaGluAspGlyLysLysLeu : 122 ! !!!. !|||!!..!.:!::!::!!:!! !.!! !.!.||| |||||| rgMetAsnAspGluLeuHisValLeuGluAspIleThrMetGlnGlyGlyLysLeu 1234523 : GGATGAACGACGAGTTGCATGTGCTTGAAGACATTACCATGCAAGGTGGTAAACTC : 1234470 123 : SerGlnPheTyrAla{S} >>>> Target Intron 2 >>>> {er}TyrMe : 130 :!!||||||||| !{!} 126 bp {:!} :! AlaGlnPheTyrArg{A}++ ++{sn}ThrLe 1234469 : GCGCAATTCTACAGA{A}gt.........................ag{AT}ACATT : 1234320 131 : tTyrAlaThrMetLeuIleTyrPheCysMetProIleIleProLysValLeuAspI : 149 : :!! !|||:!!:!!!:!.!. :!:|||:!!:!! ! ! !!||||||: uLeuSerPheMetValValPheLeuLeuValProLeuValPheProPheLeuAspV 1234319 : ACTGTCCTTCATGGTAGTTTTCCTGCTGGTCCCATTAGTTTTTCCATTCTTGGATG : 1234263 150 : leValLeuProLeuAsnThrThrArgProGluLeuTyrLeuPheGluAlaGluTyr : 167 !!||||||||||||||| !|||||||||..!! ! ! !|||..!!.!.!.||| alValLeuProLeuAsnGluThrArgProArgGlnGlnGlyPheArgValAsnTyr 1234262 : TCGTCCTTCCGTTAAATGAAACTCGACCACGACAGCAAGGATTCAGAGTTAACTAT : 1234209 168 : <->PheValAspGlnHisLysPheTyrTyrProIleLeuIleHisAlaTyrIleTh : 185 !:! !!|||:!! ! !:!!:!!:! !:!:! !.!!!!. ! ! LeuTyrPheAspGluAlaAspTyrPhePheSerValTyrPheGlnLeuAlaTrpGl 1234208 : CTATATTTCGACGAAGCGGACTATTTCTTCAGCGTGTACTTTCAATTGGCCTGGGG : 1234152 186 : rCysAlaValAlaValSerMetLeuValAlaPheAspThrGluTyrAlaIleGlnA : 204 !...!.!|||!.!|||! !!!::!!:!!.!! ! |||:!! !||| !||| ! yAlaValValValValMetIleIleIleThrValAspSerLeuTyrMetIleIleI 1234151 : TGCAGTCGTTGTTGTCATGATCATAATCACCGTAGACTCGTTGTACATGATAATAA : 1234095 205 : laLeuHisGlySerGlyIlePheSer : 212 !! !|||!.!||||||!!:|||:!! leHisHisAlaSerGlyMetPheAla 1234094 : TTCACCATGCCAGCGGAATGTTCGCC : 1234069 vulgar: gi|861722447|gb|AKO89985.1| 57 212 . KQ414851.1 1234737 1234068 - 199 M 31 93 5 0 2 I 0 71 3 0 2 M 39 117 S 0 1 5 0 2 I 0 122 3 0 2 S 1 2 M 39 117 G 0 3 M 45 135 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1234069 1234737 199 - . gene_id 1 ; sequence gi|861722447|gb|AKO89985.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1234645 1234737 . - . KQ414851.1 exonerate:protein2genome:local exon 1234645 1234737 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234643 1234644 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1234570 1234644 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1234570 1234571 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1234452 1234569 . - . KQ414851.1 exonerate:protein2genome:local exon 1234452 1234569 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1234450 1234451 . - . intron_id 2 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1234326 1234451 . - . intron_id 2 KQ414851.1 exonerate:protein2genome:local splice3 1234326 1234327 . - . intron_id 1 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1234069 1234325 . - . KQ414851.1 exonerate:protein2genome:local exon 1234069 1234325 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1234069 1234737 199 - . alignment_id 1 ; Query gi|861722447|gb|AKO89985.1| ; Align 1234738 58 93 ; Align 1234570 89 117 ; Align 1234324 129 117 ; Align 1234204 168 135 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722447|gb|AKO89985.1| odorant receptor 21 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 124 Query range: 124 -> 212 Target range: 1229500 -> 1229233 125 : PheTyrAlaSerTyrMetTyrAlaThrMetLeuIleTyrPheCysMetProIleIl : 143 |||! ! !..! !:!: ! !.!!|||! !:!!!:!!!. :!:|||:!:.! PheSerLeuAspAlaLeuLeuPheAlaMetCysValPheLeuLeuValProLeuPh 1229500 : TTTTCCTTAGATGCTTTACTCTTCGCAATGTGTGTTTTCTTGCTGGTCCCATTGTT : 1229446 144 : eProLysValLeuAspIleValLeuProLeuAsnThrThrArgProGluLeuTyrL : 162 ! ! !!.!||||||||||||||||||! !||| !|||||||||..!! ! ! | eGlyProAlaLeuAspIleValLeuProSerAsnGluThrArgProArgGlnGlnL 1229445 : TGGTCCAGCCCTGGACATCGTCCTTCCATCAAATGAAACTAGGCCACGGCAACAAC : 1229389 163 : euPheGluAlaGluTyrPheVal<->AspGlnHisLysPheTyrTyrProIleLeu : 179 |||||..!!.!.!.|||.!.:!! |||||| ! !:!!:!!:! !:!:! ! euPheArgValAsnTyrIleIlePheAspGlnAlaAspTyrPhePheTyrValTyr 1229388 : TGTTCAGAGTTAACTATATAATTTTCGACCAAGCAGACTATTTTTTCTACGTGTAT : 1229335 180 : IleHisAlaTyrIleThrCysAlaValAlaValSerMetLeuValAlaPheAspTh : 198 |||!!. !!:! ! !||| !|||! ! :!!:!!.!! ! |||:! IleGlnLeuPheTrpCysThrIleValLeuValMetAlaIleIleThrValAspSe 1229334 : ATTCAATTGTTTTGGTGTACAATCGTTCTTGTAATGGCCATTATCACCGTAGATTC : 1229278 199 : rGluTyrAlaIleGlnAlaLeuHisGlySerGlyIlePheSer : 212 ! !||| !||| ! !! !|||!.!||||||!!:|||:!! rLeuTyrMetIleIleIleTyrHisAlaSerGlyMetPheAla 1229277 : ATTGTACATGATCATAATTTACCATGCCAGCGGAATGTTCGCT : 1229234 vulgar: gi|861722447|gb|AKO89985.1| 124 212 . KQ414851.1 1229500 1229233 - 124 M 45 135 G 0 3 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1229234 1229500 124 - . gene_id 2 ; sequence gi|861722447|gb|AKO89985.1| ; gene_orientation . KQ414851.1 exonerate:protein2genome:local cds 1229234 1229500 . - . KQ414851.1 exonerate:protein2genome:local exon 1229234 1229500 . - . insertions 3 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1229234 1229500 124 - . alignment_id 2 ; Query gi|861722447|gb|AKO89985.1| ; Align 1229501 125 135 ; Align 1229363 170 129 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722453|gb|AKO89987.1| odorant receptor 23 [Microplitis mediator] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 105 Query range: 4 -> 100 Target range: 5279 -> 4991 5 : AsnProGluPheAlaIleAlaTyrThrLysLeuThrValThrLeuValCysSerTrpProPr : 25 !:!|||||| ||||||:!! !..! ! :!!! !..!.!!!!!..!|||!!!||||||! SerProGluArgAlaIleSerLeuValHisValIleThrAlaPheThrCysCysTrpProLe 5279 : AGTCCAGAAAGAGCCATCTCCCTTGTCCACGTTATCACGGCTTTTACCTGCTGTTGGCCTCT : 5219 26 : oGlyArgAsnSerSerArgLeuAspPheLeuLeuPheArgIleLysTrpTrpIleSerTrpL : 46 ! ! !!..:!!!!!!:!! ! ! |||! !|||!:!||| ! ! ! .!! ! | uProSerThrAlaThrLysSerLeuValLeuGlnPheLysIleLeuArgSerPheLeuLeuL 5218 : TCCCTCGACGGCGACTAAGTCTCTGGTGCTTCAATTTAAGATTCTGAGATCTTTCCTGCTTT : 5156 47 : euMetGlyIlePheLeuValIleProLeuIleTyrAlaAlaTyrIleAspArgArgAsnVal : 66 ||! !.!:!! ! ||| !!:!!||||||:!!|||||| !:!!:!: !!|||!.!:!!!.! euAsnAlaLeuValLeuPheLeuProLeuLeuTyrAlaLeuHisValHisArgAsnAspAla 5155 : TAAACGCGTTAGTGTTGTTTCTACCTTTGTTATATGCTCTGCACGTGCATCGAAACGACGCC : 5096 67 : LeuGluPheThrLysSerLeuCysLeuAlaValSerCysGlyGlnCysAlaValLysMetPh : 87 !.!. !!.!!|||:!! !||||||.!!:!!:!! ||| ::: || GluAsnValAlaLysAlaAlaCysLeuThrLeuAlaLeuValGlnIlePhePheGlnThrPh 5095 : GAGAACGTCGCGAAAGCTGCTTGCCTGACGCTTGCCctcgtgcaaatatttttccagacTTT : 5033 88 : ePheCysLysLeuGlnHisHisArgIleLysPheLeuLeu : 100 | !!|||! !|||:!! !!!.!.!!:!! ! !||| eValCysIleGlyGlnTyrAspHisPheGlnValArgLeu 5032 : CGTTTGCATCGGCCAATACGATCATTTTCAGGTAAGATTA : 4992 vulgar: gi|861722453|gb|AKO89987.1| 4 100 . LHQN01020543.1 5279 4991 - 105 M 96 288 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4992 5279 105 - . gene_id 1 ; sequence gi|861722453|gb|AKO89987.1| ; gene_orientation . LHQN01020543.1 exonerate:protein2genome:local cds 4992 5279 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4992 5279 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4992 5279 105 - . alignment_id 1 ; Query gi|861722453|gb|AKO89987.1| ; Align 5280 5 288 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722481|gb|AKO89996.1| odorant receptor 32 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 989 Query range: 3 -> 351 Target range: 194072 -> 196566 4 : ThrAlaThrLysAsnAspAsnThrAsnGlnAsnLysAsnGluLeuGlnLeuThrLysT : 23 ||| !||| !!!.:!!..! !:!!!:!:::!!.! ! ::::::...||| ThrPheThrProLysAsnArg***HisArgSerAsnMetValGluGluIleAlaLysL 194073 : ACGTTCACCCCGAAAAACCGTTAACACCGATCAAACATGGTCgaagaaatcgcgaaga : 194130 24 : hrAsnLysTyrGluAsnValAspTyrLysSerAspAlaAspTyrAlaValValValAl : 42 :::!!.|||...||||||:!!||||||! !|||.!!!!:||||||||| !||||| ysSerAsnTyrArgAsnValAsnTyrLysLeuAspThrGluTyrAlaValArgValAl 194131 : aatcgAATTACCGCAACGTCAATTACAAATTGGACACCGAGTACGCTGTTCGAGTAGC : 194187 43 : aArgThrLeuLeuThrProLeuGlyIleTyrProLeuHisGlySerAspThrSerLeu : 61 |!:!.!!||||||||||||:!!||||||!::||| !!..!|||:!! !! ! aLysAlaLeuLeuThrProIleGlyIleTrpPro------ArgGluAspSerLeuArg 194188 : AAAAGCGCTTCTAACACCGATCGGTATCTGGCCA------AGGGAGGATTCTCTTCGC : 194238 62 : SerLysPheLeuIleAlaIleGlnIleIleIleValPheGlyLeuMetLeuPheLeuL : 81 ..!!:! !!! !:!: ! !|||! ! !:!:||||||!.!||||||! !||||||| AspArgValArgLeuPheAlaGlnThrGlyValValPheAlaLeuMetCysPheLeuL 194239 : GACAGAGTCCGACTGTTCGCTCAAACTGGCGTGGTCTTCGCTTTGATGTGCTTTCTAC : 194298 82 : euValProHisPheIleTrpThrPhePheAspAlaGluAspLeuLysLysLeuMetLy : 100 ||||||||||| ! |||!::|||!:!||||||..!|||||||||! !!:!! !||||| euValProHisValIleTyrThrTyrPheAspCysGluAspLeuThrArgTyrMetLy 194299 : TGGTACCTCACGTGATCTACACTTACTTCGACTGCGAGGATCTGACGAGGTACATGAA : 194355 101 : sIleIleAlaAlaGlnIlePheAsnSerLeuAlaLeuIleLysPheTrpThrMetIle : 119 |:!!||||||||||||:!:|||!:! !||||||:!!||||||||||||||||||||| sValIleAlaAlaGlnValPheSerLeuLeuAlaIleIleLysPheTrpThrMetIle 194356 : GGTAATCGCGGCGCAAGTGTTCAGTCTGTTGGCGATCATCAAGTTCTGGACGATGATC : 194412 120 : IleHisLysLysGluLeuArgAsnCysLeuIleGlnLeuGluAsnAsnTrpLysAsnV : 139 :!::!!!:!||||||:!!||| !||||||:!::!!:!!|||!...!.!::!:!:!!| ValAsnArgLysGluIleArgPheCysLeuLeuGluMetGluThrGlnTyrArgAspV 194413 : GTGAACAGGAAAGAGATCAGATTCTGTCTGCTGGAGATGGAGACGCAGTACAGAGACG : 194472 140 : alLeuCysGluGluAspArgValIleMetIleLysAsnAlaLysIleGlyArgPhePh : 158 || !||||||||||||||| !:!:|||! !!. !|||||||||||||||||||| alGluCysGluGluAspArgGlnValMetThrAsnCysAlaLysIleGlyArgPhePh 194473 : TGGAGTGCGAGGAGGATCGACAGGTGATGACGAATTGCGCGAAAATCGGCCGATTTTT : 194529 159 : eThrIleAlaTyrLeuSerLeuSerTyrGlyGlyAlaLeuProTyrHisIleLeuLeu : 177 ||||! ! !||||||.!!|||||||||||||||||||||||||||||||||:!!||| eThrThrLeuTyrLeuGlyLeuSerTyrGlyGlyAlaLeuProTyrHisIleIleLeu 194530 : TACTACCCTGTACTTGGGACTTTCTTACGGTGGCGCTTTGCCGTACCACATTATTCTA : 194586 178 : ProLeuThrAlaGluArgIleValLysGluAspAsnSerThrGlnIleProLeuProT : 197 ||||||! !:!!|||||||||||||||||||||||||||||||||||||||||||||| ProLeuMetSerGluArgIleValLysGluAspAsnSerThrGlnIleProLeuProT 194587 : CCTCTGATGTCGGAGAGGATTGTCAAGGAGGATAACAGTACTCAGATACCTCTGCCAT : 194646 198 : yrProThrAspTyrValPhePheValProGluAspSerProGlyTyrGluMetLeuPh : 216 || !!:!:!!||||||||||||!.! !|||||||||||| !||||||!!: !|| yrLeuSerAsnTyrValPhePheAlaIleGluAspSerProIleTyrGluIleThrPh 194647 : ATTTGAGCAACTATGTTTTCTTCGCGATCGAAGACTCGCCGATTTACGAGATTACATT : 194703 217 : eValThrHisIleIleIleSerThrMetIleLeuSerThrAsnCysGlyIleTyrSer : 235 ||||:!!!!.|||:!:||||||!:!!!:|||||||||||||||||||||||||||||| eValSerGlnIleLeuIleSerSerIleIleLeuSerThrAsnCysGlyIleTyrSer 194704 : CGTCTCGCAGATACTGATTAGCAGCATCATATTGTCGACGAATTGTGGGATTTATAGT : 194760 236 : LeuIleAlaThrTyrIleMetHisAlaCysCysLeuPheGluValValCysArgHisL : 255 |||:!!|||||| !|||||||||..!||| !!||||||||||||..! !!|||...: LeuValAlaThrIleIleMetHisCysCysGlyLeuPheGluValThrSerArgArgM 194761 : TTGGTCGCTACTATTATTATGCATTGCTGTGGCTTGTTCGAAGTGACCAGCAGAAGGA : 194820 256 : euAspGluPheSerLysAsnAsnThrAsnAsnPheLysThrGluLeuThrTrpIleVa : 274 !!!!: .!!||| ! !!.! !!!.:!!.!!::! !..!|||! ! :!!|| etGluThrIleSerValProThrGlyLysAspIleArgGlyArgLeuArgAspValVa 194821 : TGGAGACTATTTCTGTGCCCACTGGGAAGGATATTCGGGGTAGACTTAGGGACGTCGT : 194877 275 : lGluAsnHisAsnArgAlaIle{Gl} >>>> Target Intron 1 >>>> {n} : 282 |:!! !||| !:!||||||{:!} 1391 bp {!} lGlnPheHisLeuLysAlaIle{Ly}++ ++{s} 194878 : TCAGTTTCATCTGAAAGCAATT{AA}gt.........................ag{a} : 196294 283 : PheAlaGluThrLeuGluSerSerLeuAsnIleValPheLeuCysGluMetValGlyC : 302 |||||||||! !:!!|||!.!:!!||||||||||||||||||! ||||||:!!|||| PheAlaGluMetIleGluLysAlaLeuAsnIleValPheLeuSerGluMetLeuGlyC 196295 : tTCGCTGAAATGATCGAGAAAGCACTGAACATCGTGTTTCTATCAGAGATGCTTGGCT : 196352 303 : ysThrValIleIleCysPheLeuGluTyrGlyValIleVal >>>> Target Int : 316 |||||:!!||||||||||||||||||||||||||||||||| 65 bp ysThrIleIleIleCysPheLeuGluTyrGlyValIleVal++ 196353 : GCACTATCATCATATGTTTCCTGGAATACGGTGTAATCGTGgt............... : 196396 317 : ron 2 >>>> AspTrpGluAspGlyLysLeuLeuGlyLeuValThrTyrValIleL : 331 ||||||! ||| !||| !|||.!!:!!:!!|||||| !!:!!| ++AspTrpAlaAspHisLysThrLeuSerMetMetThrTyrPheValL 196397 : ..........agGATTGGGCCGATCACAAGACACTCAGCATGATGACGTACTTCGTTC : 196504 332 : euMetThrSerIlePheValAsnCysPheIleIleSerPheAlaGlyGluArgLeuLy : 350 ||||||||||||||||||||||| ||||||||||||||| !|||!!:|||||||| euMetThrSerIlePheValAsnValPheIleIleSerPheIleGlyAspArgLeuLy 196505 : TGATGACATCGATATTCGTGAACGTGTTCATAATCTCGTTCATCGGTGATCGTCTTAA : 196561 351 : sGlu : 351 |:!! sGln 196562 : ACAA : 196566 vulgar: gi|861722481|gb|AKO89996.1| 3 351 . KQ414889.1 194072 196566 + 989 M 50 150 G 2 0 M 226 678 S 0 2 5 0 2 I 0 1387 3 0 2 S 1 1 M 33 99 5 0 2 I 0 61 3 0 2 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194073 196566 989 + . gene_id 1 ; sequence gi|861722481|gb|AKO89996.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 194073 194902 . + . KQ414889.1 exonerate:protein2genome:local exon 194073 194902 . + . insertions 0 ; deletions 2 KQ414889.1 exonerate:protein2genome:local splice5 194903 194904 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 194903 196293 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 196292 196293 . + . intron_id 0 ; splice_site "ag" KQ414889.1 exonerate:protein2genome:local cds 196294 196393 . + . KQ414889.1 exonerate:protein2genome:local exon 196294 196393 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 196394 196395 . + . intron_id 2 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 196394 196458 . + . intron_id 2 KQ414889.1 exonerate:protein2genome:local splice3 196457 196458 . + . intron_id 1 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 196459 196566 . + . KQ414889.1 exonerate:protein2genome:local exon 196459 196566 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194073 196566 989 + . alignment_id 1 ; Query gi|861722481|gb|AKO89996.1| ; Align 194073 4 150 ; Align 194223 56 678 ; Align 196295 283 99 ; Align 196459 316 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722481|gb|AKO89996.1| odorant receptor 32 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 306 Query range: 29 -> 287 Target range: 221357 -> 222143 30 : AspTyrLysSerAspAlaAspTyrAlaValValValAlaArgThrLeuLeuThrProL : 49 |||||||||!!!:!!!.! ! ! ::!||| !:!!::!||| !:!!|||! !|||: AspTyrLysThrAsnValLysLeuSerValGlnLeuSerArgTrpIleLeuLysProI 221358 : GATTACAAGACGAACGTGAAATTGAGCGTGCAATTGAGCCGTTGGATCTTGAAGCCGA : 221415 50 : euGlyIleTyrProLeuHisGlySerAspThrSerLeuSerLysPheLeuIleAlaIl : 68 !!|||:!!!::||| ! !.!!:! !:!!!!!:!!..!!:!!:!||| ! !:! leGlyValTrpProAsnSerAlaAsnIleSerThrValGluArgTyrLeuTyrTrpLe 221416 : TCGGTGTTTGGCCAAATTCAGCCAACATTTCCACGGTAGAGAGATACCTCTACTGGCT : 221472 69 : eGlnIleIleIleValPheGlyLeuMetLeuPheLeuLeuValProHisPheIleTrp : 87 : !! !:!!:!! !!:!.!!|||!!: !||||||||||||||| ! !:!!!:: uIleAsnValValCysTyrSerLeuIleThrPheLeuLeuValProCysSerLeuTyr 221473 : GATAAACGTCGTTTGTTACAGCCTGATCACGTTCCTCTTGGTACCTTGCAGCCTTTAC : 221529 88 : ThrPhePheAspAlaGluAspLeuLysLysLeuMetLysIleIleAlaAlaGlnIleP : 107 ..!.!!.!!!!:!.!||||||:!! ! !!. !!!:|||:!::!:!.! !! !! !| ValIleLeuGluValGluAspValTyrAsnArgIleLysLeuLeuGlyProLeuSerP 221530 : GTGATCCTCGAAGTAGAAGATGTCTACAATAGAATCAAATTGTTGGGTCCGTTGAGTT : 221589 108 : heAsnSerLeuAlaLeuIleLysPheTrpThrMetIleIleHisLysLysGluLeuAr : 126 || ! !:!!|||!!!:!!|||!:! !:!!|||:!!:!!:!!!!.!!::!!|| heCysValMetAlaPheLeuLysTyrHisLeuLeuIleLeuTyrGluAsnAspIleAr 221590 : TCTGCGTGATGGCATTTCTAAAGTATCATCTGTTGATACTTTACGAGAACGACATCCG : 221646 127 : gAsnCysLeuIleGlnLeuGluAsnAsnTrpLysAsnValLeuCysGluGluAspArg : 145 |.!.|||:!! !:::!!||| :!!|||||||||:!! !! !...:!!|||!:! gGluCysIleGluArgIleGluTrpAspTrpLysAsnIleThrTyrSerLysAspLys 221647 : TGAGTGCATCGAGCGCATCGAATGGGATTGGAAGAATATCACTTACTCCAAGGATAAG : 221703 146 : ValIleMetIleLysAsnAlaLysIleGlyArgPhePheThrIleAlaTyrLeuSerL : 165 ! !|||||||||:!!||||||! .!!|||||| !!.! !!!: !! ! !! !! AspIleMetIleGluAsnAlaIlePheGlyArgArgLeuIleMetIleCysThrPheP 221704 : GATATAATGATAGAGAACGCGATTTTTGGCAGGCGATTGATCATGATCTGCACATTTT : 221763 166 : euSerTyrGlyGlyAlaLeuProTyrHisIleLeuLeuProLeuThrAlaGluArgIl : 184 !!! !|||.!!||| ::: |||:::||| !:!!|||!!!!:!!.!! !:!|| heMetTyrSerGlyPheValPheTyrTyrIleAlaIleProPheSerValGlyLysIl 221764 : TCATGTACAGTggtttcgttttttattacatAGCCATACCGTTTAGCGTGGGTAAAAT : 221820 185 : eValLysGluAsp<->AsnSerThrGlnIleProLeuProTyrProThrAspTyrVal : 202 | ! !:!!||| ||| ||| ||||||:!! !!:!||| !... !! eProAlaGlnAspValAsnValThrPheIleProMetValPheProPheSerArgPhe 221821 : TCCTGCGCAGGATgtgaatgtaacttttattCCAATGGTGTTTCCTTTCTCGAGATTT : 221877 203 : PhePheValProGluAspSerProGlyTyrGluMetLeuPheValThrHisIleIleI : 222 .!! !!! ! !!..! !!||||||! ! !!|||!!:|||||| ! !!!.|||!!: IleValAspThrArgTyrSerProValAsnGluIleLeuPheSerLeuGlnIleMetA 221878 : ATCGTCGATACTCGGTACAGTCCTGTAAACGAGATTCTGTTCTCGCTTCAAATTATGG : 221937 223 : leSerThrMetIleLeuSerThrAsnCysGlyIleTyrSerLeuIleAlaThrTyrIl : 241 .!!.!!:!!!!:! !|||! !!..! !.! !! !||||||:!!|||! !!:! laGlyAlaLeuMetHisSerIleThrSerAlaAlaCysSerLeuValAlaMetPheAl 221938 : CGGGTGCTTTGATGCACAGTATTACATCGGCAGCTTGCAGTTTGGTTGCTATGTTTGC : 221994 242 : eMetHisAlaCysCysLeuPheGluValVal<-><-><->CysArgHisLeuAspGlu : 257 !:!!||||||||| !!! !.!.:!!|||:!! !:!|||||| !.!. aValHisAlaCysGlyGlnMetGlnValLeuMetSerTrpLeuLysHisLeuIleAsn 221995 : TGTGCACGCTTGCGGTCAGATGCAAGTGTTGATGAGCTGGCTGAAACATTTGATCAAC : 222051 258 : PheSerLysAsnAsnThrAsnAsnPheLysThrGluLeuThrTrpIleValGluAsnH : 277 ! !! !:!!! !|||||| ! ! ! !..!:!!.!! !||||||.!..!.| GlyArgAlaAspMetCysAsnAsnValAspArgArgIleAlaLysIleValAsnGlnH 222052 : GGCCGGGCGGATATGTGTAACAACGTGGATAGGAGAATAGCGAAGATTGTGAATCAAC : 222111 278 : isAsnArgAlaIleGlnPheAlaGluThrLeu : 287 || !||| !:!:|||!:!!.!... !:!! isValArgIleLeuGlnTyrValArgCysIle 222112 : ACGTTCGAATATTGCAGTATGTACGTTGTATC : 222143 vulgar: gi|861722481|gb|AKO89996.1| 29 287 . KQ414889.1 221357 222143 + 306 M 159 477 G 0 3 M 63 189 G 0 9 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 221358 222143 306 + . gene_id 2 ; sequence gi|861722481|gb|AKO89996.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 221358 222143 . + . KQ414889.1 exonerate:protein2genome:local exon 221358 222143 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 221358 222143 306 + . alignment_id 2 ; Query gi|861722481|gb|AKO89996.1| ; Align 221358 30 477 ; Align 221838 189 189 ; Align 222036 252 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722481|gb|AKO89996.1| odorant receptor 32 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 247 Query range: 31 -> 229 Target range: 294672 -> 295269 32 : LysSerAspAlaAspTyrAlaValValValAlaArgThrLeuLeuThrProLeuGlyI : 51 !:!!:!|||!.!! !!::!:!! ! !..!|||! !||||||! !|||:!!|||: ArgAsnAspValAlaAsnSerLeuLysTyrCysArgArgLeuLeuLysProIleGlyL 294673 : AGAAACGACGTGGCGAACAGCCTCAAGTATTGTCGAAGGCTGTTGAAACCGATCGGTC : 294730 52 : leTyrProLeuHisGlySerAspThrSer<->LeuSerLysPheLeuIleAlaIleGl : 69 !!!::|||||| ! !||| !!|||||| |||!:!||| !!||| !|||! euTrpProLeuIleTyrSerHisThrSerLysLeuAsnLysValLeuSerIleIleLe 294731 : TTTGGCCACTTATCTACAGTCACACCAGCAAACTGAACAAAGTCCTTTCGATAATTCT : 294787 70 : nIleIleIleValPheGlyLeuMetLeuPheLeuLeuValProHisPheIleTrpThr : 88 !||| ! ! !:!:||||||:!!||||||||| ! !!:: ! uIleAlaTrpCysThrLeuThrValLeuPheValLeuValProCysGlyTyrPheCys 294788 : GATCGCGTGGTGTACGTTGACCGTACTGTTCGTTTTAGTGCCATGCGGATACTTCTGT : 294844 89 : PhePheAspAlaGluAspLeuLysLysLeuMetLysIleIleAlaAlaGlnIlePheA : 108 ! ||| !!!..:::::::::||| !||||||:!!:!:!.! !! !:!!!:!: ValPheHisValLysAsnValLysLeuLysMetLysLeuLeuGlyProValLeuTyrS 294845 : GTATTCCACGTgaaaaacgtgaaattgaaGATGAAACTTCTGGGTCCGGTACTATACT : 294904 109 : snSerLeuAlaLeuIleLysPheTrpThrMetIleIleHisLysLysGluLeuArgAs : 127 :!! !|||:!!:!!:!!!:!!:! ! !:!::!!:!: ! ! ! ! !!!!!:!:! erMetLeuSerMetLeuArgTyrSerCysLeuValLeuLysThrProAlaPheLysHi 294905 : CTATGCTCTCTATGCTCAGGTACAGCTGTCTAGTTTTGAAAACGCCCGCGTTCAAGCA : 294961 128 : nCysLeuIleGlnLeuGluAsnAsnTrpLysAsnValLeuCysGluGluAspArgVal : 146 !|||:!! !.!.:!!||||||:!!|||||| :!! ! ! !||| !!|||!.! sCysIleGluAspIleGluAsnAspTrpLysLeuIleAspAsnProGluHisArgAla 294962 : TTGCATCGAAGACATAGAGAACGATTGGAAGTTGATCGATAATCCGGAACACCGAGCG : 295018 147 : IleMetIleLysAsnAlaLysIleGlyArgPhePheThrIleAlaTyrLeuSerLeuS : 166 ||||||||||||||||||! !:!! !!:! .!.|||:!!|||!:! !! !:!!! IleMetIleLysAsnAlaMetValThrGlnArgMetThrValAlaPheThrIleIleI 295019 : ATCATGATCAAGAACGCGATGGTCACGCAGAGGATGACCGTCGCTTTTACTATTATAA : 295078 167 : erTyrGlyGlyAlaLeuProTyrHisIleLeuLeuProLeuThrAlaGluArgIleVa : 185 !|||.!!..!|||:!! !!|||||| !:!!:::|||... :::... :!:! leTyrSerSerAlaValSerTyrHisAlaIleValProPhePheSerAsnAlaLeuGl 295079 : TCTACAGTTCTGCGGTGTCGTATCACGCCATTGtgccatttttttcaaacgctTTGGA : 295135 186 : lLysGluAspAsnSerThrGlnIleProLeuProTyrProThrAspTyrValPhePhe : 204 !!!.:!! ! |||!:!||| ! !!|||||| !||| ! !! ! :!!||| ! uAsnLysLysAsnAsnThrIleArgAlaLeuProIleProGlyTyrGluLeuPheVal 295136 : GAACAAGAAGAATAATACGATTCGTGCGTTACCAATTCCTGGCTACGAGTTATTCGTA : 295192 205 : ValProGluAspSerProGlyTyrGluMetLeuPheValThrHisIleIleIleSerT : 224 ! ! !! ! ..!|||||| !||||||!!::!! ..! !! !.!!:!! !||| AspAlaTyrSerSerProThrTyrGluIleIleArgThrHisLeuPheValTyrSerP 295193 : GACGCTTATTCCAGTCCTACCTACGAGATCATAAGAACTCATCTCTTTGTTTACTCGT : 295252 225 : hrMetIleLeuSerThr : 229 !.!.:!! !!.!||| hePheValAsnLysThr 295253 : TCTTCGTCAACAAAACT : 295269 vulgar: gi|861722481|gb|AKO89996.1| 31 229 . KQ414889.1 294672 295269 + 247 M 29 87 G 0 3 M 169 507 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 294673 295269 247 + . gene_id 3 ; sequence gi|861722481|gb|AKO89996.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 294673 295269 . + . KQ414889.1 exonerate:protein2genome:local exon 294673 295269 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 294673 295269 247 + . alignment_id 3 ; Query gi|861722481|gb|AKO89996.1| ; Align 294673 32 87 ; Align 294763 61 507 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722481|gb|AKO89996.1| odorant receptor 32 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 243 Query range: 26 -> 323 Target range: 232429 -> 234647 27 : GluAsnValAspTyrLysSerAspAlaAspTyrAlaValValValAlaArgThrLeuL : 46 !!:!..:!!:!! !! ! !!||| !!!:|||::!:!! !||| !||| !!!!| AspThrLeuAsnAlaThrArgAspTyrGluTyrSerIleGlnValAsnArgTrpPheL 232430 : GACACGTTGAACGCTACGCGAGACTACGAGTACAGCATCCAGGTGAACCGTTGGTTTC : 232487 47 : euThrProLeuGlyIleTyrProLeuHisGlySerAspThrSerLeuSerLysPheLe : 65 ||||||||:!!||| !!::|||! ! ! !..! !:!!!!! !..!:!!.!.|| euThrProMetGlyAlaTrpProArgValThrGluThrSerArgAlaGlnGlnLeuLe 232488 : TGACACCGATGGGCGCATGGCCGCGTGTTACAGAGACCTCGAGAGCCCAGCAACTACT : 232544 66 : uIleAlaIleGlnIleIleIleValPheGlyLeuMetLeuPheLeuLeuValProHis : 84 | !:!: !! !:!!! ! ! !..!||||||:!!! !! !:!!|||||| ! uAlaLysLeuLeuArgLeuThrCysHisSerLeuMetIleSerSerIleValProCys 232545 : CGCGAAACTGTTGAGACTCACCTGTCATTCTCTGATGATCTCCTCGATCGTACCGTGC : 232601 85 : PheIleTrpThrPhePheAspAlaGluAspLeuLysLysLeuMetLysIleIleAlaA : 104 .!!:!:!::! !.!.|||!!:! ! !..!|||:!!:!! !|||||| !|||!.! IleLeuPheIleLeuPheGluAspThrSerLeuGluGluArgMetLysSerIleGlyP 232602 : ATTCTGTTCATCCTGTTCGAAGACACGAGCCTAGAGGAAAGGATGAAGTCTATCGGTC : 232661 105 : laGlnIlePheAsnSerLeuAlaLeuIleLysPheTrpThrMetIleIleHisLysLy : 123 !!..!! ! ! ! !:!!!.! !:!:!!.!:!!! !:!!:!: ! ! !!! roMetSerHisPheLeuMetGlyGluLeuAsnTyrCysCysLeuLeuAlaLysAlaAs 232662 : CTATGAGTCACTTTCTGATGGGTGAATTGAATTATTGCTGCTTGTTGGCAAAGGCGAA : 232718 124 : sGluLeuArgAsnCysLeuIleGlnLeuGluAsnAsnTrpLysAsnValLeuCysGlu : 142 .!!::!!! ! !!|||:!! !|||:!!:!!.!.:!!|||::!|||||| ! nAspIleLeuTyrCysValGluGlnValLysGlnAspTrpArgAsnValLysLysPro 232719 : CGACATCCTCTATTGCGTGGAACAGGTGAAACAGGACTGGCGAAACGTTAAGAAACCC : 232775 143 : GluAspArgValIleMetIleLysAsnAlaLysIleGlyArgPhePheThrIleAlaT : 162 ! !!|||! !:!:|||:!:||||||||||||:!!||||||! .!..!! ! ! ValHisArgAspLeuMetLeuLysAsnAlaLysLeuGlyArgSerIleAlaCysIleA 232776 : GTCCATCGTGATCTGATGTTGAAGAACGCGAAACTTGGACGTTCGATAGCTTGCATCG : 232835 163 : yrLeuSerLeuSerTyrGlyGlyAlaLeuProTyrHisIleLeuLeuProLeuThrAl : 181 ! !! !! !! !:!! !|||!.! ! !! !!.!.|||:!! ! !||| ! laAlaPheCysMetHisThrGlyValGlySerAspGluIleValThrGlyLeuArgMe 232836 : CTGCGTTTTGCATGCACACCGGTGTCGGCTCCGACGAAATAGTCACAGGACTTCGTAT : 232892 182 : aGluArgIle<->ValLysGluAspAsnSerThrGlnIleProLeuProTyrProThr : 199 !...! !.!! ||| !.!.!!:!:!! !:!!..! !|||||||||! ! !! ! tSerThrPheTyrValGlyAsnGluSerTyrSerMetTyrProLeuProCysThrPhe 232893 : GAGCACGTTCTACGTGGGGAACGAGAGTTACTCGATGTACCCGTTACCTTGCACGTTC : 232949 200 : AspTyrValPhePheValProGluAspSerProGlyTyrGluMetLeuPheValThrH : 219 !! !.!..!.! ! !!..! !|||||| ! !!|||!!::!!|||||| !! TyrThrLysLeuMetAspThrArgPheSerProThrAsnGluIleMetPheValLeuG 232950 : TACACGAAGCTGATGGACACCAGATTCAGTCCGACGAACGAGATAATGTTCGTTCTAC : 233009 220 : isIleIleIleSerThrMetIleLeuSerThrAsnCysGlyIleTyrSerLeuIleAl : 238 !. !:!! !.!! !!!::!: !|||..!!.! ||| !! !.!!||| !|| lnCysLeuSerGlyPheIleValAsnSerValThrValGlyAlaCysGlyLeuGlyAl 233010 : AGTGTCTCTCCGGGTTCATCGTGAACTCCGTTACTGTGGGAGCCTGCGGTTTAGGCGC : 233066 239 : aThrTyrIleMetHisAlaCysCysLeuPheGluValValCysArgHisLeuAspGlu : 257 |..! |||||||||||| ! ! !.!..!.|||||| ! ! ||||||!!: aValLeuAlaMetHisAlaCysGlyGlnLeuAsnValValMetSerLysLeuAspAsp 233067 : TGTTCTAGCGATGCACGCGTGCGGACAGCTGAACGTGGTGATGTCGAAATTGGACGAT : 233123 258 : Phe<-><->SerLysAsnAsnThrAsnAsnPhe<->LysThrGluLeuThrTrpIleV : 274 !!. :!!|||....!. !.!.!.. !! :!!! !:!!||| !!::|||| LeuValAspAlaLysGlyGlnGluGluArgValAlaGlnArgLysLeuGlyPheIleV 233124 : TTGGTGGACGCGAAAGGGCAGGAGGAGAGAGTCGCGCAGAGGAAGTTAGGTTTCATCG : 233183 275 : alGluAsnHisAsnArgAlaIle{Gl} >>>> Target Intron 1 >>>> {n : 282 |||||:!!||| |||.!!:!!{..} 1315 bp {. alGluHisHisLeuArgThrLeu{Se}++ ++{r 233184 : TGGAGCATCATTTGCGTACATTA{AG}gt.........................ag{T : 234524 283 : }PheAlaGluThrLeuGluSerSerLeuAsnIleValPheLeuCysGluMetValGly : 301 }||| !..!!.!:!!|||!:! !:!!|||:!!:!!! !||| !|||:!!|||||| }PheIleArgAsnIleGluAsnValMetAsnLeuIleCysLeuValGluLeuValGly 234525 : }TTTATACGGAATATAGAGAACGTTATGAACCTAATATGCCTGGTTGAGTTGGTAGGA : 234579 302 : CysThrValIleIleCysPheLeuGluTyrGlyValIleValAspTrpGluAspGlyL : 321 ||||||:!!! !!!:|||.!.||||||||| !:!!:!!..!! ! ...| CysThrLeuAsnMetCysMetLeuGluTyrTyrLeuLeuThrValArgPheThrAsnL 234580 : TGCACGTTGAACATGTGCATGCTCGAGTATTATTTACTCACGGTACGTTTTactaata : 234639 322 : ysLeuLeu : 323 ||:::||| ysIleLeu 234640 : aaattctt : 234647 vulgar: gi|861722481|gb|AKO89996.1| 26 323 . KQ414889.1 232429 234647 + 243 M 158 474 G 0 3 M 74 222 G 0 6 M 8 24 G 0 3 M 15 45 S 0 2 5 0 2 I 0 1311 3 0 2 S 1 1 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 232430 234647 243 + . gene_id 4 ; sequence gi|861722481|gb|AKO89996.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 232430 233208 . + . KQ414889.1 exonerate:protein2genome:local exon 232430 233208 . + . insertions 12 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 233209 233210 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 233209 234523 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 234522 234523 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 234524 234647 . + . KQ414889.1 exonerate:protein2genome:local exon 234524 234647 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 232430 234647 243 + . alignment_id 4 ; Query gi|861722481|gb|AKO89996.1| ; Align 232430 27 474 ; Align 232907 185 222 ; Align 233135 259 24 ; Align 233162 267 45 ; Align 234525 283 123 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722481|gb|AKO89996.1| odorant receptor 32 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 231 Query range: 27 -> 267 Target range: 266610 -> 267333 28 : AsnValAspTyrLysSerAspAlaAspTyrAlaValValValAlaArgThrLeuLeuT : 47 .!.!.!:!! !!.||| ::!||||||::!:!! !:!! !||| !!!!|||! GluAlaAsnLeuAsnSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuL 266611 : GAAGCGAATCTAAACAGTCTGAGCGATTACAGCCTGCAATTGAATCGATGGTTCCTGA : 266668 48 : hrProLeuGlyIleTyrProLeuHisGlySerAspThrSerLeuSerLysPheLeuIl : 66 !|||:!!||| !!::|||! ! ..! ! :!!!.!|||..!::!.!!:!! ysProIleGlyAlaTrpProProLeuSerLeuThrSerLysLeuGluArgIleValSe 266669 : AACCTATAGGCGCTTGGCCGCCGTTGTCACTCACATCTAAACTCGAACGAATCGTTTC : 266725 67 : eAlaIleGlnIleIleIleValPheGlyLeuMetLeuPheLeuLeuValProHisPhe : 85 ! ! ! !|||:!!||| !!:! !!! !!!:|||||| !:!!:!!||| !!!. rTyrAlaLeuIleValIleCysTyrCysSerIleLeuPheThrValIleProCysLeu 266726 : CTACGCTTTGATCGTCATCTGCTACTGCTCCATACTGTTCACCGTAATCCCTTGCTTG : 266782 86 : IleTrpThrPhePheAspAlaGluAspLeuLysLysLeuMetLysIleIleAlaAlaG : 105 .!! ! !!.!.!!:! !|||..!:!!:::! ! !:!!|||:!:.!!!.! !!! PheHisLeuValLeuGluAspGluSerIleArgThrLysValLysValPheGlyProL 266783 : TTTCATCTCGTTCTGGAGGACGAGAGTATCCGTACGAAAGTGAAGGTGTTCGGTCCTC : 266842 106 : lnIlePheAsnSerLeuAlaLeuIleLysPheTrpThrMetIleIleHisLysLysGl : 124 !! ! ! ! !:!!!.! !|||!!.!:! |||:!!:!::!!!.!!..||||| euSerHisTrpPheValGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGl 266843 : TGAGCCATTGGTTCGTCGGAGGAATTAACTACACCACACTGTTGCTACGCAGCAAAGA : 266899 125 : uLeuArgAsnCysLeuIleGlnLeuGluAsnAsnTrpLysAsnValLeuCysGluGlu : 143 |:!!|||..!|||:!! !!.:!!:!!!..:!!|||!:!! !||| ! ! !||| uIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGlu 266900 : GATACGCGGTTGCGTAGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAG : 266956 144 : AspArgValIleMetIleLysAsnAlaLysIleGlyArgPhePheThrIleAlaTyrL : 163 |||!:! !:!:|||:!:|||||||||!:!|||||||||!:!.!!.!!||| !! ! AspLysGlnValMetLeuLysAsnAlaArgIleGlyArgTyrIleAlaIlePheCysA 266957 : GACAAGCAGGTGATGTTGAAGAACGCGAGGATCGGTCGTTACATTGCTATATTCTGCG : 267016 164 : euSerLeuSerTyrGlyGlyAlaLeuProTyrHisIleLeuLeuProLeuThrAlaGl : 182 !:!!!!!! ! ! !!|||!.!||| !||| !:!::!! ! !!!!!||| !:! laAlaPheMetGlnCysGlyValLeuGlyTyrCysValIleThrAlaPheThrMetGl 267017 : CGGCGTTCATGCAATGCGGTGTTCTCGGCTACTGTGTGATAACGGCGTTCACTATGCA : 267073 183 : uArgIle<->ValLysGluAspAsnSerThrGlnIleProLeuProTyrProThrAsp : 200 !! !:!: ||| .!.!!:!.!!!!! ! ! !! !||||||! ! !!..! !! nThrValGluValGlyAsnGluThrArgIleValHisLeuLeuProCysAlaValTyr 267074 : GACCGTGGAAGTCGGTAACGAGACTAGGATCGTACATCTGTTGCCCTGTGCAGTTTAC : 267130 201 : TyrValPhePheValProGluAspSerProGlyTyrGluMetLeuPheValThrHisI : 220 ! !.!..!!!.! !!!: !|||||| ! !!|||!!::!!.!!|||:!!!!.. LysLysMetIleAlaValAspThrSerProThrAsnGluIleValLeuValSerGlnP 267131 : AAGAAGATGATCGCAGTTGATACCAGCCCGACGAACGAGATTGTCCTTGTTTCACAGT : 267190 221 : leIleIleSerThrMetIleLeuSerThrAsnCysGlyIleTyrSerLeuIleAlaTh : 239 !!:!! !.!! !!!::!: !|||!:! ! !||| !!:!|||||| !|||.. heValSerGlyPheIleValAsnSerSerValValGlyAlaPheSerLeuAlaAlaVa 267191 : TCGTATCAGGATTCATCGTGAATTCGAGCGTCGTCGGTGCTTTCAGCCTTGCCGCCGT : 267247 240 : rTyrIleMetHisAlaCysCysLeuPheGluValValCysArgHisLeuAspGluPhe : 258 !!:! ||||||||| ! ! !.!....|||:!! ! ! :!! ! |||||| lPheAlaAlaHisAlaCysGlyGlnLeuSerValLeuMetMetTrpIleLysGluPhe 267248 : GTTCGCGGCTCACGCGTGCGGACAGCTGAGCGTGCTGATGATGTGGATCAAGGAGTTT : 267304 259 : SerLysAsnAsnThrAsnAsnPheLys : 267 !!!....::!! !:!!!:! !||| ValAsnArgSerArgAspSerAsnLys 267305 : GTGAACCGATCCAGAGATAGCAATAAG : 267333 vulgar: gi|861722481|gb|AKO89996.1| 27 267 . KQ414889.1 266610 267333 + 231 M 157 471 G 0 3 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 266611 267333 231 + . gene_id 5 ; sequence gi|861722481|gb|AKO89996.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 266611 267333 . + . KQ414889.1 exonerate:protein2genome:local exon 266611 267333 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 266611 267333 231 + . alignment_id 5 ; Query gi|861722481|gb|AKO89996.1| ; Align 266611 28 471 ; Align 267085 185 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722481|gb|AKO89996.1| odorant receptor 32 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 225 Query range: 27 -> 268 Target range: 256625 -> 257351 28 : AsnValAspTyrLysSerAspAlaAspTyrAlaValValValAlaArgThrLeuLeuT : 47 !!...!:!!!:!|||||| !!::!||||||::!:!! !:!! !||| !!!!|||! LysThrAsnPheLysSerTyrSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuL 256626 : AAGACGAATTTTAAAAGTTACAGCGATTACAGTCTCCAGTTGAATCGATGGTTCCTGA : 256683 48 : hrProLeuGlyIleTyrProLeuHisGlySerAspThrSerLeuSerLysPheLeuIl : 66 !|||:!!||| !!::|||! ! ..!||| !|||!!!|||..!::! !:!! ysProIleGlyAlaTrpProProSerSerSerThrThrThrLeuGluArgAsnValSe 256684 : AACCTATAGGCGCATGGCCACCCTCGTCGTCCACTACAACCCTCGAGCGAAACGTTTC : 256740 67 : eAlaIleGlnIleIleIleValPheGlyLeuMetLeuPheLeuLeuValProHisPhe : 85 !:!! !! !|||:!! !!:!|||! !!!:|||||| !|||:!!||| !!!. rIleValLeuAsnIleValCysTyrGlySerIleLeuPheThrLeuIleProCysLeu 256741 : GATCGTTTTGAACATCGTCTGCTATGGTTCTATATTGTTCACCTTGATACCCTGTTTG : 256797 86 : IleTrpThrPhePheAspAlaGluAspLeuLysLysLeuMetLysIleIleAlaAlaG : 105 :!! ..!|||.!!|||! !!!:..!!!! ! :::||| ...... !!. LeuHisValPheLeuAspAspAspSerPheTyrMetLysValLysAsnPheGlyProM 256798 : CTCCATGTATTTCTTGACGACGACAGTTTCTAcatgaaagtgaaaaatttcggtCCTA : 256857 106 : lnIlePheAsnSerLeuAlaLeuIleLysPheTrpThrMetIleIleHisLysLysGl : 124 .!! ! ! ! !:!!::!! ! !!!.!:! ! !:!!:!::!!!!. !|||!! etSerHisTrpIleIleSerCysAlaAsnTyrThrLeuLeuLeuLeuGlnGlyLysAs 256858 : TGAGCCATTGGATCATCAGCTGTGCCAATTACACGTTGCTGTTGTTACAAGGAAAAGA : 256914 125 : uLeuArgAsnCysLeuIleGlnLeuGluAsnAsnTrpLysAsnValLeuCysGluGlu : 143 ::!!||| !!|||:!! !!.:!!|||!..:!!|||!:!! ||| ! ! |||:!! pIleArgTyrCysValGluHisIleGluThrAspTrpArgMetValArgArgGluLys 256915 : CATACGCTACTGCGTCGAGCATATAGAAACGGATTGGAGAATGGTGAGGAGGGAGAAG : 256971 144 : AspArgValIleMetIleLysAsnAlaLysIleGlyArgPhePheThrIleAlaTyrL : 163 |||!:! !:!:|||!!:|||||||||!:!.!!||||||!:! ! .!!! ! !! ! AspGlnGlnValMetMetLysAsnAlaArgPheGlyArgTyrValAlaThrPheCysA 256972 : GATCAACAAGTGATGATGAAGAACGCGAGATTCGGTCGTTACGTGGCCACATTTTGCG : 257031 164 : euSerLeuSerTyrGlyGlyAlaLeuProTyrHisIleLeuLeuProLeuThrAlaGl : 182 !:!!:!!! ! ! .!!|||...... ::: :::! !! ! !!|||!.!.!!|| laAlaIleMetGlnSerGlyValPheCysPhePheValSerSerAlaLeuAsnThrGl 257032 : CAGCTATCATGCAAAGCGGCgttttctgtttcttcgtGTCGTCGGCGCTGAACACGGA : 257088 183 : uArgIleValLysGluAspAsnSerThrGlnIleProLeuProTyrProThrAspTyr : 201 |! !||| ! !! !:!!.!.!!!||| :!:! !:!!! ! ! !|||! ||| uIleIleHisValGlyAsnGluThrThrIleValArgValLeuProValThrValTyr 257089 : GATAATTCACGTGGGAAACGAAACAACGATCGTGCGAGTGCTACCTGTTACCGTGTAC : 257145 202 : ValPhePheValProGluAsp<->SerProGlyTyrGluMetLeuPheValThrHisI : 220 ! .!.:!! !! ||| |||||| ! !!|||!!::!! !! !!! !!!.! LysLysLeuLeuAsnValAspGlnSerProThrAsnGluIleValValPheMetGlnT 257146 : AAGAAGCTGTTGAACGTCGATCAGAGTCCTACGAACGAGATCGTGGTCTTTATGCAAA : 257205 221 : leIleIleSerThrMetIleLeuSerThrAsnCysGlyIleTyrSerLeuIleAlaTh : 239 ! |||! !!!: !!!!!:!!.. !.!!|||!:!|||||| |||.. hrTrpSerSerIleIleAlaThrThrSerThrValSerIlePheSerLeuAlaAlaVa 257206 : CTTGGTCGTCGATTATAGCGACTACTAGTACAGTTAGTATATTCAGTCTCGCGGCTGT : 257262 240 : rTyrIleMetHisAlaCysCysLeuPheGluValValCysArgHisLeuAspGluPhe : 258 !!:! !! ||||||! ! !!! !!!. |||:!! ! :!! |||||| lPheAlaThrHisAlaTyrGlyGlnLeuThrValLeuMetSerTrpIleThrGluPhe 257263 : TTTTGCCACTCATGCGTACGGTCAGTTGACTGTGCTTATGTCGTGGATAACAGAGTTT : 257319 259 : SerLysAsnAsnThrAsnAsnPheLysThr : 268 !!!..!.:::! !|||... |||||| ValAsnGluSerArgAsnArgGluLysThr 257320 : GTGAATGAGTCGAGGAATCGggagaaaacg : 257351 vulgar: gi|861722481|gb|AKO89996.1| 27 268 . KQ414889.1 256625 257351 + 225 M 181 543 G 0 3 M 60 180 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 256626 257351 225 + . gene_id 6 ; sequence gi|861722481|gb|AKO89996.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 256626 257351 . + . KQ414889.1 exonerate:protein2genome:local exon 256626 257351 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 256626 257351 225 + . alignment_id 6 ; Query gi|861722481|gb|AKO89996.1| ; Align 256626 28 543 ; Align 257172 209 180 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722481|gb|AKO89996.1| odorant receptor 32 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 225 Query range: 27 -> 267 Target range: 274356 -> 275079 28 : AsnValAspTyrLysSerAspAlaAspTyrAlaValValValAlaArgThrLeuLeuT : 47 !.!!.!:!!!:! ! ||| !::!||||||::!:!! !:!! !||| !!!!|||! ThrAlaAsnPheAspSerLeuSerAspTyrSerLeuGlnLeuAsnArgTrpPheLeuL 274357 : ACTGCGAATTTCGACAGTCTCAGCGACTACAGCTTGCAATTGAACCGATGGTTCTTGA : 274414 48 : hrProLeuGlyIleTyrProLeuHisGlySerAspThrSerLeuSerLysPheLeuIl : 66 !|||:!!||| !::|||||| !..! !! !|||!.!!!!..!::!.!!||| ysProIleGlyAlaTrpProLeuAlaSerProThrThrLysPheGluArgIleLeuSe 274415 : AGCCTATAGGCGCGTGGCCGTTAGCCTCGCCCACCACGAAATTCGAACGAATCCTTTC : 274471 67 : eAlaIleGlnIleIleIleValPheGlyLeuMetLeuPheLeuLeuValProHisPhe : 85 ! !::: |||...::: ::! !!!!!!!:|||! ! !:!!:!!||| !.!. rHisLeuLeuIlePheLeuCysTyrCysPheIleLeuSerThrValIleProSerIle 274472 : ACACCttttaatcttcctttgctACTGCTTCATACTCTCCACCGTTATCCCAAGCATA : 274528 86 : IleTrpThrPhePheAspAlaGluAspLeuLysLysLeuMetLysIleIleAlaAlaG : 105 .!! ! !.!..!.! ! !|||..!||| ! ! !:!!|||:!::!!!.! !!! PheHisIleIleLeuValAspGluSerLeuHisLeuLysLeuLysLeuLeuGlyProL 274529 : TTTCACATCATACTAGTAGATGAAAGTCTCCATCTGAAGCTGAAGTTGCTCGGTCCTC : 274588 106 : lnIlePheAsnSerLeuAlaLeuIleLysPheTrpThrMetIleIleHisLysLysGl : 124 ! ! ! !:!!!.! !|||!!.!:! |||:!!:!::!!!.!!..||||| euGlyHisTrpPheIleGlyGlyIleAsnTyrThrThrLeuLeuLeuArgSerLysGl 274589 : TCGGTCACTGGTTCATCGGAGGAATTAATTACACCACGCTGTTGCTACGCAGCAAAGA : 274645 125 : uLeuArgAsnCysLeuIleGlnLeuGluAsnAsnTrpLysAsnValLeuCysGluGlu : 143 |:!!|||..!|||:!! !!.:!!:!!!..:!!|||!:!! !||| ! ! !||| uIleArgGlyCysValGluHisMetGlnThrAspTrpArgIleValThrArgProGlu 274646 : GATACGCGGCTGCGTGGAGCACATGCAAACAGATTGGAGGATCGTGACCAGACCGGAG : 274702 144 : AspArgValIleMetIleLysAsnAlaLysIleGlyArgPhePheThrIleAlaTyrL : 163 |||!:! !:!:|||:!:|||||||||||||||||||||!:! !!.!!||| !! ! AspGlnGlnValMetLeuLysAsnAlaLysIleGlyArgTyrValAlaIlePheCysA 274703 : GATCAACAAGTGATGTTGAAGAACGCGAAGATCGGTCGTTACGTCGCGATCTTCTGTG : 274762 164 : euSerLeuSerTyrGlyGlyAlaLeuProTyrHisIleLeuLeuProLeuThrAlaGl : 182 !:!!!!!! ! ! !!|||!.!||| !||| !:!::!! ! !!!!!||| !:! laAlaPheMetGlnCysGlyValLeuCysTyrCysValIleThrAlaPheThrMetGl 274763 : CGGCGTTCATGCAATGCGGTGTTCTCTGTTATTGCGTGATAACAGCGTTCACTATGCA : 274819 183 : uArgIle<->ValLysGluAspAsnSerThrGlnIleProLeuProTyrProThrAsp : 200 !! !:!! ||| !.!.!!:!.!!!!||| ! ! !||||||! ! !.!! !! nThrValGlnValGlyAsnGluThrArgThrValHisMetLeuProCysLysAlaTyr 274820 : GACCGTTCAAGTAGGGAACGAGACCAGAACCGTGCATATGTTGCCGTGTAAAGCTTAC : 274876 201 : TyrValPhePheValProGluAspSerProGlyTyrGluMetLeuPheValThrHisI : 220 ! !.!! !!!.! !!!: |||||| ! !!|||!!::!!.!!!.!:!!!!.. LysLysIleValAlaValAspThrSerProThrAsnGluIleValLeuAlaSerGlnP 274877 : AAGAAGATCGTCGCGGTGGACACGAGTCCGACGAACGAGATCGTCCTTGCCTCGCAAT : 274936 221 : leIleIleSerThrMetIleLeuSerThrAsnCysGlyIleTyrSerLeuIleAlaTh : 239 !!:!: .!! !!!::!: !|||!:! !||| !!:!|||||| !|||.. heValSerGlyPheIleValAsnSerSerAlaValGlyAlaPheSerLeuAlaAlaVa 274937 : TCGTGTCGGGATTTATCGTGAATTCGAGCGCGGTCGGCGCATTCAGCCTTGCCGCCGT : 274993 240 : rTyrIleMetHisAlaCysCysLeuPheGluValValCysArgHisLeuAspGluPhe : 258 !!:! ||||||! ! !!! !!!....|||:!! ! ! :!! !|||||| lPheAlaAlaHisAlaTyrGlyGlnLeuSerValLeuMetIleTrpIleThrGluPhe 274994 : GTTCGCGGCACACGCTTACGGCCAGTTGAGCGTGCTGATGATATGGATCACCGAGTTT : 275050 259 : SerLysAsnAsnThrAsnAsnPheLys : 267 !!!.:!!::!! !:!:... ||| ValAsnHisSerArgAspGlnAsnLys 275051 : GTGAATCATTCCAGGGAtcagaataaa : 275079 vulgar: gi|861722481|gb|AKO89996.1| 27 267 . KQ414889.1 274356 275079 + 225 M 157 471 G 0 3 M 83 249 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 274357 275079 225 + . gene_id 7 ; sequence gi|861722481|gb|AKO89996.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 274357 275079 . + . KQ414889.1 exonerate:protein2genome:local exon 274357 275079 . + . insertions 3 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 274357 275079 225 + . alignment_id 7 ; Query gi|861722481|gb|AKO89996.1| ; Align 274357 28 471 ; Align 274831 185 249 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722481|gb|AKO89996.1| odorant receptor 32 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 214 Query range: 29 -> 267 Target range: 262828 -> 263545 30 : AspTyrLysSerAspAlaAspTyrAlaValValValAlaArgThrLeuLeuThrProL : 49 ..!!:! ||| !::!||||||::!:!! !:!! !||| !||||||! !|||: SerPheGlySerLeuSerAspTyrSerLeuGlnIleAsnArgTrpLeuLeuLysProI 262829 : AGTTTCGGCAGTCTCAGCGACTACAGCCTGCAGATAAACCGGTGGCTGCTGAAACCGA : 262886 50 : euGlyIleTyrProLeuHisGlySerAspThrSerLeuSerLysPheLeuIleAlaIl : 68 !!||| !!::|||||| !!.!||| !:!!!!!:!!..!::!.!!:!! !:! leGlyAlaTrpProLeuSerAlaSerIleSerArgMetGluArgIleIleTrpPheLe 262887 : TCGGTGCATGGCCACTGTCCGCCTCGATCTCAAGAATGGAACGAATTATCTGGTTTCT : 262943 69 : eGlnIleIleIleValPheGlyLeuMetLeuPheLeuLeuValProHisPheIleTrp : 87 ! !|||:!!:!! !!:! !!|||!!:|||! ! !:!!:!!||| !.!.:!! uLeuIleValValCysTyrCysLeuIleLeuSerThrValIleProSerIleLeuHis 262944 : CTTAATCGTCGTCTGTTACTGTCTCATACTATCCACCGTTATCCCTTCCATACTTCAT : 263000 88 : ThrPhePheAspAlaGluAspLeuLysLysLeuMetLysIleIleAlaAlaGlnIleP : 107 ! ! !!.!.!!:||||||:!!!!! ! ! ! !:!!:!!:!!:!!!.! !!! ! IleValLeuGluAlaGluAsnPheHisMetLysLeuGlnValLeuGlyProLeuGlyG 263001 : ATCGTCCTAGAAGCCGAGAATTTCCATATGAAGCTGCAGGTTCTCGGTCCGCTCGGTC : 263060 108 : heAsnSerLeuAlaLeuIleLysPheTrpThrMetIleIleHisLysLysGluLeuAr : 126 ! !:!!!.!:!!|||!!.!:! !:!!:!::!!|||!..|||!!::!!!: lnTrpPheValGlyMetIleAsnTyrThrTrpLeuLeuLeuHisSerLysAspIleGl 263061 : AGTGGTTCGTCGGTATGATCAATTACACCTGGTTGTTGCTTCACAGTAAAGATATACA : 263117 127 : gAsnCysLeuIleGlnLeuGluAsnAsnTrpLysAsnValLeuCysGluGluAspArg : 145 !..!|||:!! !!!.:!!:!!.!.:!!||| ! !||| ! ! !||||||!:! nGlyCysValGlnHisValGlnGluAspTrpCysIleValThrArgLeuGluAspGln 263118 : AGGTTGCGTGCAACACGTGCAGGAAGACTGGTGTATCGTGACCAGGTTGGAGGATCAA : 263174 146 : ValIleMetIleLysAsnAlaLysIleGlyArgPhePheThrIleAlaTyrLeuSerL : 165 !||||||:!:|||||||||||| !|||||| !:!..! !|||! !! !:!!: ArgIleMetLeuLysAsnAlaLysTyrGlyArg---TyrValAlaAlaSerCysAlaI 263175 : CGTATCATGCTGAAGAACGCGAAATACGGCCGC---TACGTGGCAGCTTCTTGCGCGA : 263231 166 : euSerTyrGlyGlyAlaLeuProTyrHisIleLeuLeuProLeuThrAlaGluArgIl : 184 !!! ! ! !::!:!! !! ! ! !|||:!! !! ! !.!! !!:!:! lePheMetGlnThrSerIleMetCysLysCysLeuValThrAlaPheThrThrGlnVa 263232 : TCTTCATGCAAACGAGCATCATGTGCAAGTGCCTAGTCACAGCGTTCACTACACAGGT : 263288 185 : eValLysGluAspAsnSerThrGlnIle<-><->ProLeuProTyrProThrAspTyr : 201 ::!!:!!!!:! !|||..!|||::!||| !||||||! !|||..! !! ! lIleGluAspGlyAsnGluThrArgIleLeuArgMetLeuProCysProValTyrLys 263289 : GATCGAGGACGGTAACGAGACTAGAATTCTACGTATGCTACCGTGTCCAGTGTACAAA : 263345 202 : ValPhePheValProGluAspSerProGlyTyrGluMetLeuPheValThrHisIleI : 221 ! !.!!.!! ! !!!: !:!||| ! !!|||!!:!!!.!!!.!|||!!..!!: GluIleIleProValAspThrAsnProThrAsnGluIlePheLeuAlaThrGlnPheL 263346 : GAGATCATTCCAGTCGACACGAATCCGACGAACGAGATCTTTCTCGCCACGCAATTTC : 263405 222 : leIleSerThrMetIleLeuSerThrAsnCysGlyIleTyrSerLeuIleAlaThrTy : 240 !: .!! !!!::!! !:!!|||!.! !||| !!:!.!!:!!! !|||..!!: euSerGlyPheIleValThrAlaThrThrValGlyAlaPheGlyMetThrAlaValPh 263406 : TGTCGGGTTTCATCGTCACCGCGACAACTGTCGGTGCTTTCGGTATGACAGCGGTGTT : 263462 241 : rIleMetHisAlaCysCysLeuPheGluValValCysArgHisLeuAspGluPheSer : 259 ! ! ||||||||| ! ! !!!..!.|||:!! ! :!! |||||| ! eAlaGlyHisAlaCysGlyGlnLeuAsnValLeuMetSerTrpIleThrGluPheVal 263463 : CGCCGGTCATGCTTGCGGACAGTTGAACGTGTTGATGTCCTGGATCACGGAATTCGTG : 263519 260 : LysAsnAsnThrAsnAsnPheLys : 267 !!..!.::!! !:!!.!. !||| AsnGlnSerArgAspGluAsnLys 263520 : AACCAGTCCAGGGATGAGAATAAG : 263545 vulgar: gi|861722481|gb|AKO89996.1| 29 267 . KQ414889.1 262828 263545 + 214 M 127 381 G 1 0 M 36 108 G 0 6 M 74 222 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 262829 263545 214 + . gene_id 8 ; sequence gi|861722481|gb|AKO89996.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 262829 263545 . + . KQ414889.1 exonerate:protein2genome:local exon 262829 263545 . + . insertions 6 ; deletions 1 KQ414889.1 exonerate:protein2genome:local similarity 262829 263545 214 + . alignment_id 8 ; Query gi|861722481|gb|AKO89996.1| ; Align 262829 30 381 ; Align 263210 158 108 ; Align 263324 194 222 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722465|gb|AKO89991.1| odorant receptor 27 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 110 Query range: 35 -> 222 Target range: 194270 -> 194831 36 : ValIleIleSerAlaPheIleLeuGlnValGlyProLysIleLeuAlaAspIleValH : 55 |||:!!.!!:!! !.!. !!!!! !:!!! !||| ! :!::!! ! ! ! !! ValValPheAlaLeuMetCysPheLeuLeuValProHisValIleTyrThrTyrPheA 194271 : GTGGTCTTCGCTTTGATGTGCTTTCTACTGGTACCTCACGTGATCTACACTTACTTCG : 194328 56 : isSerAspAspGlnGluLeuIleLeuGluThrLeuAlaProThrIleThrAsnValMe : 74 !!!!!!!:|||! ! ! ! !:!!:!!..!:!!||| !! !:!: !!:!:!!:! spCysGluAspLeuThrArgTyrMetLysValIleAlaAlaGlnValPheSerLeuLe 194329 : ACTGCGAGGATCTGACGAGGTACATGAAGGTAATCGCGGCGCAAGTGTTCAGTCTGTT : 194385 75 : tAlaPheAlaLysTyrIleAsnThrPheValAsnAlaArgMetLeuLysIleLeuPhe : 93 !|||.!! !|||!:! !..! !.!!|||||| !!:! !:!!!:!.!!! !.!. uAlaIleIleLysPheTrpThrMetIleValAsnArgLysGluIleArgPheCysLeu 194386 : GGCGATCATCAAGTTCTGGACGATGATCGTGAACAGGAAAGAGATCAGATTCTGTCTG : 194442 94 : GluArgIleLysAspAspTrpGluSerValThrAspLysLysGluLysIleIleLeuG : 113 !..!!!::!! .!.!::..!..!||| ! !:!!:!!!!:::! :!::!! LeuGluMetGluThrGlnTyrArgAspValGluCysGluGluAspArgGlnValMetT 194443 : CTGGAGATGGAGACGCAGTACAGAGACGTGGAGTGCGAGGAGGATCGACAGGTGATGA : 194502 114 : luSerTyrAlaGlyPheGlyLysLeuMetAlaThrGlyTyrAlaGlyPheValTyrAl : 132 !!:!! !||| !.!!|||::!!!!.!..!!||| !||| !|||.!! !|||!. hrAsnCysAlaLysIleGlyArgPhePheThrThrLeuTyrLeuGlyLeuSerTyrGl 194503 : CGAATTGCGCGAAAATCGGCCGATTTTTTACTACCCTGTACTTGGGACTTTCTTACGG : 194559 133 : aAlaThrValGlnPheIleThrGluProValLeuProIleIleLeuAsnAsnIleLeu : 151 !!.!.!!:!!! !!:! !! ! ! ! !||| ! !! ! !! ! yGlyAlaLeuProTyrHisIleIleLeuProLeuMetSerGluArgIleValLysGlu 194560 : TGGCGCTTTGCCGTACCACATTATTCTACCTCTGATGTCGGAGAGGATTGTCAAGGAG : 194616 152 : ArgThrAsnLeuSerAlaProHisLysPheAlaAspProMetGluTrpIleIleIleA : 171 !!.!!:! !..! !|||! !!:! !..! ! ! !::.!! |||! AspAsnSerThrGlnIleProLeuProTyrLeuSerAsnTyrValPhePheAlaIleG 194617 : GATAACAGTACTCAGATACCTCTGCCATATTTGAGCAACTATGTTTTCTTCGCGATCG : 194676 172 : spLysGluLysTyrTyrTrpIleLeuLeuSerAsnSerSerValCysIleMetValIl : 190 !: ! ..! ! !||| !||| !!!! !:::..!! !:!! !! !! :!!|| luAspSerProIleTyrGluIleThrPheValSerGlnIleLeuIleSerSerIleIl 194677 : AAGACTCGCCGATTTACGAGATTACATTCGTCTCGCAGATACTGATTAGCAGCATCAT : 194733 191 : eLeuThrValLeuIleSerTyrAspValIlePheIleThrPheValTyrHisAlaCys : 209 ||||:!!..! ! !.!! ! !! !:!: !! !|||.!!:!! |||..!||| eLeuSerThrAsnCysGlyIleTyrSerLeuValAlaThrIleIleMetHisCysCys 194734 : ATTGTCGACGAATTGTGGGATTTATAGTTTGGTCGCTACTATTATTATGCATTGCTGT : 194790 210 : GlyLeuPheAlaIleThrGlyHisArgIleGluAsnLeu : 222 |||||||||! !:!:|||.!!...|||!!:|||!.!:!! GlyLeuPheGluValThrSerArgArgMetGluThrIle 194791 : GGCTTGTTCGAAGTGACCAGCAGAAGGATGGAGACTATT : 194831 vulgar: gi|861722465|gb|AKO89991.1| 35 222 . KQ414889.1 194270 194831 + 110 M 187 561 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 194271 194831 110 + . gene_id 1 ; sequence gi|861722465|gb|AKO89991.1| ; gene_orientation . KQ414889.1 exonerate:protein2genome:local cds 194271 194831 . + . KQ414889.1 exonerate:protein2genome:local exon 194271 194831 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 194271 194831 110 + . alignment_id 1 ; Query gi|861722465|gb|AKO89991.1| ; Align 194271 36 561 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722468|gb|AKO89992.1| odorant receptor 28 [Microplitis mediator] Target: KQ414889.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold697, whole genome shotgun sequence Model: protein2genome:local Raw score: 104 Query range: 333 -> 397 Target range: 219518 -> 219797 334 : LysValCysGluAlaTyrTyrAspCysLeuTrpTyrLysMetProLysGluSerSerL : 353 |||::: ||| ||| ! !||||||::!:!! !! !:!!!.!!.! LysIleGlyGluMetSerTyrMetIleGluTrpTyrArgLeuThrGlyLysLysLysL 219519 : aaaattggagaaatgtCGTACATGATCGAATGGTACCGATTGACAGGAAAGAAAAAGC : 219576 354 : ysThrIleValLeuCysMetAlaArgSerGlnLysProLeuGlyLeuThrAlaGlyLy : 372 !! !|||||| !!:|||! !|||.!.... !!:!! !||||||||||||!! euTrpSerValLeuThrIleAlaMetSerAsnSerSerIleLysLeuThrAlaGlyAs 219577 : TCTGGAGCGTTTTGACAATCGCTATGTCGAATTCCTCGATAAAATTGACAGCCGGAAA : 219633 373 : sPheGlyAlaPheCysLeuSerThrLeuThrAsp >>>> Target Intron 1 > : 384 ..!.! !! !!!.! !:!!||||||!!!|||||| 87 bp nMetValGluLeuSerIleSerThrPheThrAsp++ 219634 : TATGGTCGAATTGTCTATCAGCACTTTTACCGACgt...................... : 219671 385 : >>> ValValLysThrAlaMetAlaTyrLeuSerValLeuArgThr : 397 |||||||||||||||:!:.!!!:!|||!:!|||||||||||| ++ValValLysThrAlaValThrPheLeuAsnValLeuArgThr 219672 : ...agGTCGTTAAGACTGCAGTCACGTTTCTGAATGTACTACGAACA : 219797 vulgar: gi|861722468|gb|AKO89992.1| 333 397 . KQ414889.1 219518 219797 + 104 M 50 150 5 0 2 I 0 83 3 0 2 M 14 42 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414889.1 exonerate:protein2genome:local gene 219519 219797 104 + . gene_id 1 ; sequence gi|861722468|gb|AKO89992.1| ; gene_orientation + KQ414889.1 exonerate:protein2genome:local cds 219519 219668 . + . KQ414889.1 exonerate:protein2genome:local exon 219519 219668 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local splice5 219669 219670 . + . intron_id 1 ; splice_site "GT" KQ414889.1 exonerate:protein2genome:local intron 219669 219755 . + . intron_id 1 KQ414889.1 exonerate:protein2genome:local splice3 219754 219755 . + . intron_id 0 ; splice_site "AG" KQ414889.1 exonerate:protein2genome:local cds 219756 219797 . + . KQ414889.1 exonerate:protein2genome:local exon 219756 219797 . + . insertions 0 ; deletions 0 KQ414889.1 exonerate:protein2genome:local similarity 219519 219797 104 + . alignment_id 1 ; Query gi|861722468|gb|AKO89992.1| ; Align 219519 334 150 ; Align 219756 384 42 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722447|gb|AKO89985.1| odorant receptor 21 [Microplitis mediator] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 340 -> 388 Target range: 1712537 -> 1713315 341 : GlySerLysSerLysAsnLeuLeuHisMetMetIleMetArgSerArgIleProCy : 359 |||!!!! !! !!:!!!. !||| :!::!:|||!!:|||||||||:!!||||| GlyArgMetIleArgLysAspLeuIleLeuValIleIleArgSerArgValProCy 1712538 : GGAAGAATGATAAGGAAGGATTTGATACTCGTTATCATAAGATCGAGAGTACCTTG : 1712592 360 : sLysLeuThrAlaGlyLysIleTyrLeuMetSerLeuGluAsnPheThrGly >> : 377 | ||||||||| !! !.!!!:!:!!!!:|||||||||!..!:!||| ! sCysLeuThrAlaArgGlyPhePheValIleSerLeuGluThrTyrThrLys++ 1712593 : TTGCTTGACCGCCAGAGGATTCTTCGTAATATCTTTGGAAACGTATACGAAGgt.. : 1712648 378 : >> Target Intron 1 >>>> ValValLysThrSerMetSerTyrPheThrV : 387 634 bp |||:!!!..|||:!!:!!||||||||||||: ++ValIleSerThrAlaValSerTyrPheThrL 1712649 : .......................agGTTATAAGTACAGCAGTGTCGTACTTCACAC : 1713310 388 : alLeu : 388 !!||| euLeu 1713311 : TGTTA : 1713315 vulgar: gi|861722447|gb|AKO89985.1| 340 388 . KQ414915.1 1712537 1713315 + 108 M 36 108 5 0 2 I 0 630 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712538 1713315 108 + . gene_id 1 ; sequence gi|861722447|gb|AKO89985.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1712538 1712645 . + . KQ414915.1 exonerate:protein2genome:local exon 1712538 1712645 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1712646 1712647 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1712646 1713279 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1713278 1713279 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1713280 1713315 . + . KQ414915.1 exonerate:protein2genome:local exon 1713280 1713315 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712538 1713315 108 + . alignment_id 1 ; Query gi|861722447|gb|AKO89985.1| ; Align 1712538 341 108 ; Align 1713280 377 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722447|gb|AKO89985.1| odorant receptor 21 [Microplitis mediator] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 338 -> 388 Target range: 1695779 -> 1696248 339 : ArgAlaGlySerLysSerLysAsnLeuLeuHisMetMetIleMetArgSerArgIl : 357 ||| !|||!.!!.. !::!.!. !:!!! |||:!!||||||||||||!.!! ArgAsnGlyLysSerValArgGlnSerMetLeuMetValIleMetArgSerAsnAr 1695780 : AGAAATGGGAAAAGTGTGCGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAG : 1695834 358 : eProCysLysLeuThrAlaGlyLysIleTyrLeuMetSerLeuGluAsnPheThrG : 376 !||| |||||||||.!! !.!!!:!! !:!:|||||||||!.!!:!|||| gCysCysCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrTyrThrG 1695835 : GTGTTGCTGCTTAACAGCCAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTG : 1695891 377 : ly >>>> Target Intron 1 >>>> ValValLysThrSerMetSerTyrP : 385 || 319 bp |||:!!!..|||:!!|||||||||| ly++ ++ValLeuSerThrAlaMetSerTyrP 1695892 : GGgt.........................agGTCCTCAGCACTGCAATGTCATACT : 1696237 386 : heThrValLeu : 388 |||||:!!||| heThrLeuLeu 1696238 : TTACACTACTG : 1696248 vulgar: gi|861722447|gb|AKO89985.1| 338 388 . KQ414915.1 1695779 1696248 + 100 M 38 114 5 0 2 I 0 315 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1695780 1696248 100 + . gene_id 2 ; sequence gi|861722447|gb|AKO89985.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1695780 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695780 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 0 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696248 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696248 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1695780 1696248 100 + . alignment_id 2 ; Query gi|861722447|gb|AKO89985.1| ; Align 1695780 339 114 ; Align 1696213 377 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722447|gb|AKO89985.1| odorant receptor 21 [Microplitis mediator] Target: KQ414921.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold872, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 133 -> 212 Target range: 1644 -> 1881 134 : MetLeuIleTyrPheCysMetProIleIleProLysValLeuAspIleValLeuProLeuAs : 154 :!::!!:!:!:! ! ! ! !|||:!:! !||| ! :!!|||||||||:!!|||||| !|| ValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProLysAs 1645 : GTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAAAA : 1705 155 : nThrThrArgProGluLeuTyrLeuPheGluAlaGluTyrPheValAspGlnHisLysPheT : 175 | !:!!||| !! ! !|||:!!!:! !||| ! ||||||..!|||:!!||||||!:! nGluSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrA 1706 : CGAGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACG : 1768 176 : yrTyrProIleLeuIleHisAlaTyrIleThrCysAlaValAlaValSerMetLeuValAla : 195 !! !|||:!!! ||| ! !..! ! !|||!.! !!! !:!!! ! !!||| spValTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrPheAla 1769 : ACGTGTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCT : 1828 196 : PheAspThrGluTyrAlaIleGlnAlaLeuHisGlySerGlyIlePheSer : 212 ! !||||||...||| ! ! !.!! !||||||!!!|||:!:!!.:!! CysAspThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAla 1829 : TGTGACACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCC : 1881 vulgar: gi|861722447|gb|AKO89985.1| 133 212 . KQ414921.1 1644 1881 + 139 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414921.1 exonerate:protein2genome:local gene 1645 1881 139 + . gene_id 1 ; sequence gi|861722447|gb|AKO89985.1| ; gene_orientation . KQ414921.1 exonerate:protein2genome:local cds 1645 1881 . + . KQ414921.1 exonerate:protein2genome:local exon 1645 1881 . + . insertions 0 ; deletions 0 KQ414921.1 exonerate:protein2genome:local similarity 1645 1881 139 + . alignment_id 1 ; Query gi|861722447|gb|AKO89985.1| ; Align 1645 134 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722468|gb|AKO89992.1| odorant receptor 28 [Microplitis mediator] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 151 Query range: 288 -> 399 Target range: 807257 -> 807590 289 : GlyTyrGlnLeuLeuValAsnTyrAlaArgGlyGlnGlyAlaAspLeuValThrPheP : 308 |||!:! !!!|||||| ! ::!! ! !.!...!!.!! !:!!! ! !| GlyPheValPheLeuValAlaLeuSerThrLysAspAsnValAlaAlaLeuArgSerP 807258 : GGTTTCGTCTTCCTGGTCGCTCTGAGCACGAAGGACAACGTTGCAGCATTGAGGAGCT : 807315 309 : heValPheIlePheLeuValPheLeuValLeuTyrAlaHisCysValValGlyGluSe : 327 |||||.!.!!: ! !:!!.!.:!! !|||||| !:!!..! !!.!|||.!.!! heValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaGlyAsnTh 807316 : TCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGGGCAACAC : 807372 328 : rLeuIleThrGluSerPheLysValCysGluAlaTyrTyrAspCysLeuTrpTyrLys : 346 !||| :!!..!!!! :!!:!!...:!!||| !||||||! !|||||||||::: rLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTrpTyrArg 807373 : ACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTGGTACCGT : 807429 347 : MetProLysGluSerSerLysThrIleValLeuCysMetAlaArgSerGlnLysProL : 366 ! ! !.!.:!!:!!!:! !:!!:!!||| !!!: !|||.!!.!...!|||! CysHisGlyHisAlaAlaArgAspLeuLeuLeuIleIleHisArgGlyAsnSerProT 807430 : TGCCACGGGCACGCAGCCAGAGATCTCCTTTTGATCATCCATCGAGGAAATTCGCCTT : 807489 367 : euGlyLeuThrAlaGlyLysPheGlyAlaPheCysLeuSerThrLeuThrAspValVa : 385 ! !!:!!|||||||||||||||! ! !!.!. !|||! !|||!!!! !!!::!!:! yrArgIleThrAlaGlyLysPheValProMetAsnLeuPheThrPheLysGluIleLe 807490 : ATCGTATAACAGCCGGAAAATTCGTCCCGATGAATCTTTTCACTTTCAAGGAGATACT : 807546 386 : lLysThrAlaMetAlaTyrLeuSerValLeuArgThrPheLeu : 399 !|||.!!:!! :!!||||||||||||:!!!:!..!.!.:!! uLysAlaSerGlySerTyrLeuSerValMetLysValMetMet 807547 : GAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGTAATGATG : 807590 vulgar: gi|861722468|gb|AKO89992.1| 288 399 . KQ414940.1 807257 807590 + 151 M 111 333 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807258 807590 151 + . gene_id 1 ; sequence gi|861722468|gb|AKO89992.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807258 807590 . + . KQ414940.1 exonerate:protein2genome:local exon 807258 807590 . + . insertions 0 ; deletions 0 KQ414940.1 exonerate:protein2genome:local similarity 807258 807590 151 + . alignment_id 1 ; Query gi|861722468|gb|AKO89992.1| ; Align 807258 289 333 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722450|gb|AKO89986.1| odorant receptor 22 [Microplitis mediator] Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 103 Query range: 166 -> 221 Target range: 22137 -> 22302 167 : ValLeuPheHisValGluTyrPheTyrAspLeuGluLysTyrTyrTyrProLeuLeuIle : 186 :!!! !|||!!. |||||||||:::||| !|||||| !! !:!!:!!:!: IleProPheGlnGlyGluTyrPhePheAspGlnGluLysAsnMetValPheIleIleLeu 22138 : ATTCCGTTTCAaggggaatattttttcgaccAAGAGAAAAATATGGTGTTCATTATACTG : 22195 187 : HisSerTyrPheGlyThrMetAlaTyrMetThrValAlaValAlaIleAspSerMetPhe : 206 |||! ! .!! !..!! ! !:!!|||||| !! !|||! !!!:!!. HisMetIleLeuThrValThrIleThrHisCysIleAlaValMetThrAspMetIleLeu 22196 : CACATGATACTCACAGTTACAATCACACATTGCATTGCTGTAATGACTGATATGATTTTG : 22255 207 : MetValTyrValGlnHisAlaCysAlaIlePheAlaValIleGly : 221 :!:|||! ..!..!||||||||||||:!:|||||||||:!!||| LeuValLeuThrMetHisAlaCysAlaLeuPheAlaValValGly 22256 : CTAGTTTTAACCATGCATGCCTGTGCCTTGTTCGCTGTTGTTGGG : 22302 vulgar: gi|861722450|gb|AKO89986.1| 166 221 . KQ415081.1 22137 22302 + 103 M 55 165 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 22138 22302 103 + . gene_id 1 ; sequence gi|861722450|gb|AKO89986.1| ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 22138 22302 . + . KQ415081.1 exonerate:protein2genome:local exon 22138 22302 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 22138 22302 103 + . alignment_id 1 ; Query gi|861722450|gb|AKO89986.1| ; Align 22138 167 165 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722447|gb|AKO89985.1| odorant receptor 21 [Microplitis mediator] Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 133 Query range: 126 -> 214 Target range: 32482 -> 32746 127 : AlaSerTyrMetTyrAlaThrMetLeuIleTyrPheCysMetProIleIleProLysVal : 146 .!!.!!!:!:!:||| ! !!!:!!! !||| :!!! !.!!:!:||| ! :!! ThrGlyPheValTyrIleGlyIlePheSerTyrAlaIleValGlnPheLeuProTyrIle 32483 : ACAGGATTCGTATACATTGGAATATTTTCCTACGCAATAGTGCAATTCCTGCCGTACATT : 32540 147 : LeuAspIleValLeuProLeuAsnThrThrArgProGluLeuTyrLeuPheGluAlaGlu : 166 :!!|||:!::!! !||||||||| !:!!|||! !.!.:!! ! !!:!! !.!||| IleAspValIleAlaProLeuAsnGluSerArgHisHisValLeuProTyrAlaGlyGlu 32541 : ATCGACGTGATAGCGCCTCTAAACGAATCCCGACACCATGTACTGCCGTACGCCGGCGAA : 32600 167 : TyrPheValAspGlnHisLysPheTyrTyrProIleLeuIleHisAlaTyrIleThrCys : 186 |||||||||||||||...|||:::::: |||||| !:!:||| ! ! ||| ! TyrPheValAspGlnGlnLysTyrPheLeuProIleAlaLeuHisMetLeuGlyThrVal 32601 : TATTTCGTCGACcagcaaaaatatttcctaccAATCGCGTTGCACATGCTCGGGACCGTT : 32660 187 : AlaValAlaValSerMetLeuValAlaPheAspThrGluTyrAlaIleGlnAlaLeuHis : 206 .!!:!!!.!:!!!!!:!: !..!||| |||::: ::: ... !!!!||| ThrLeuGlyLeuThrValAlaThrAlaValAspSerIlePheIlePhePheMetPheHis 32661 : ACCCTTGGTCTGACGGTCGCCACGGCTGtcgattcaattttcatattcttcatGTTCCAC : 32720 207 : GlySerGlyIlePheSerAlaLeu : 214 ! !!!!!.!! !|||!:! !||| ValCysAlaLysPheAsnIleLeu 32721 : GTTTGCGCCAAATTCAATATTCTC : 32746 vulgar: gi|861722447|gb|AKO89985.1| 126 214 . KQ415081.1 32482 32746 + 133 M 88 264 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 32483 32746 133 + . gene_id 1 ; sequence gi|861722447|gb|AKO89985.1| ; gene_orientation . KQ415081.1 exonerate:protein2genome:local cds 32483 32746 . + . KQ415081.1 exonerate:protein2genome:local exon 32483 32746 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 32483 32746 133 + . alignment_id 1 ; Query gi|861722447|gb|AKO89985.1| ; Align 32483 127 264 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722465|gb|AKO89991.1| odorant receptor 27 [Microplitis mediator] Target: KQ415081.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold1554, whole genome shotgun sequence Model: protein2genome:local Raw score: 118 Query range: 345 -> 403 Target range: 26752 -> 27638 346 : GlyAsnTrpTyrAspIleSerThrLysSerGlnLysLeuLeuIleLeuMetThrMetArg : 365 |||!:!||||||! !!|||::!:!!||||||||||||:!:|||:!! !..!!:! GlySerTrpTyrAlaAlaProThrArgAlaGlnLysLeuLeuLeuLeuValLeuGlnLys 26753 : GGAAGCTGGTACGCGGCGCCAACGCGGGCACAAAAATTGCTGCTGCTGGTGTTGCAGAAA : 26810 366 : SerGlnValProCysIleLeuThrAlaGlyLysIleMetGluLeuSerValGluSerPhe : 385 !!!..!|||||||||! !|||:!!|||!.!||||||:!: !|||:!!:!!! !!:! CysMetValProCysSerLeuSerAlaAlaLysIleValThrAlaSerLeuGlnIleTyr 26811 : TGCATGGTGCCTTGTAGTTTATCGGCCGCTAAAATTGTCACCGCATCGCTGCAAATCTAT : 26870 386 : GlyMet >>>> Target Intron 1 >>>> MetMetLysThrSerGlySerTyrP : 396 !.!! ! 712 bp !!::!::!!||||||! !||||||| AlaThr++ ++IleValGlnThrSerValSerTyrP 26871 : GCTACGgt.........................agATCGTCCAGACGTCGGTATCTTACT : 27615 397 : heThrValLeuLeuSerMetGln : 403 ||:!!||||||! !:!!:!!:!! heSerValLeuTyrAlaLeuLys 27616 : TCTCTGTGCTGTACGCGCTGAAA : 27638 vulgar: gi|861722465|gb|AKO89991.1| 345 403 . KQ415081.1 26752 27638 + 118 M 42 126 5 0 2 I 0 708 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ415081.1 exonerate:protein2genome:local gene 26753 27638 118 + . gene_id 1 ; sequence gi|861722465|gb|AKO89991.1| ; gene_orientation + KQ415081.1 exonerate:protein2genome:local cds 26753 26878 . + . KQ415081.1 exonerate:protein2genome:local exon 26753 26878 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local splice5 26879 26880 . + . intron_id 1 ; splice_site "GT" KQ415081.1 exonerate:protein2genome:local intron 26879 27590 . + . intron_id 1 KQ415081.1 exonerate:protein2genome:local splice3 27589 27590 . + . intron_id 0 ; splice_site "aG" KQ415081.1 exonerate:protein2genome:local cds 27591 27638 . + . KQ415081.1 exonerate:protein2genome:local exon 27591 27638 . + . insertions 0 ; deletions 0 KQ415081.1 exonerate:protein2genome:local similarity 26753 27638 118 + . alignment_id 1 ; Query gi|861722465|gb|AKO89991.1| ; Align 26753 346 126 ; Align 27591 388 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722447|gb|AKO89985.1| odorant receptor 21 [Microplitis mediator] Target: LHQN01023902.1 Habropoda laboriosa contig23902, whole genome shotgun sequence Model: protein2genome:local Raw score: 139 Query range: 133 -> 212 Target range: 220 -> 457 134 : MetLeuIleTyrPheCysMetProIleIleProLysValLeuAspIleValLeuProLeuAsnT : 155 :!::!!:!:!:! ! ! ! !|||:!:! !||| ! :!!|||||||||:!!|||||| !||| ValIleLeuPheValSerThrProValThrProHisIleLeuAspIleLeuLeuProLysAsnG 221 : GTCATCCTGTTCGTGTCGACGCCGGTGACACCGCATATTTTGGACATTTTACTACCGAAAAACG : 284 156 : hrThrArgProGluLeuTyrLeuPheGluAlaGluTyrPheValAspGlnHisLysPheTyrTy : 176 !:!!||| !! ! !|||:!!!:! !||| ! ||||||..!|||:!!||||||!:! !! luSerArgAspValAlaTyrIleTyrProAlaTyrTyrPheThrAspGluHisLysTyrAspVa 285 : AGTCACGAGACGTAGCGTACATTTACCCGGCCTATTATTTCACCGACGAGCATAAGTACGACGT : 347 177 : rProIleLeuIleHisAlaTyrIleThrCysAlaValAlaValSerMetLeuValAlaPheAsp : 197 !|||:!!! ||| ! !..! ! !|||!.! !!! !:!!! ! !!|||! !||| lTyrIleIleThrHisMetAlaSerValIleLeuValValPheTyrValTyrPheAlaCysAsp 348 : GTACATAATTACGCACATGGCGTCCGTGATCCTGGTGGTGTTTTACGTGTACTTCGCTTGTGAC : 410 198 : ThrGluTyrAlaIleGlnAlaLeuHisGlySerGlyIlePheSer : 212 |||...||| ! ! !.!! !||||||!!!|||:!:!!.:!! ThrSerTyrIleTyrValValGlnHisGlyCysGlyLeuLeuAla 411 : ACCAGTTACATATACGTCGTGCAACACGGCTGCGGATTGTTGGCC : 457 vulgar: gi|861722447|gb|AKO89985.1| 133 212 . LHQN01023902.1 220 457 + 139 M 79 237 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01023902.1 exonerate:protein2genome:local gene 221 457 139 + . gene_id 1 ; sequence gi|861722447|gb|AKO89985.1| ; gene_orientation . LHQN01023902.1 exonerate:protein2genome:local cds 221 457 . + . LHQN01023902.1 exonerate:protein2genome:local exon 221 457 . + . insertions 0 ; deletions 0 LHQN01023902.1 exonerate:protein2genome:local similarity 221 457 139 + . alignment_id 1 ; Query gi|861722447|gb|AKO89985.1| ; Align 221 134 237 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722441|gb|AKO89983.1| odorant receptor 19 [Microplitis mediator] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 137 Query range: 129 -> 216 Target range: 11477 -> 11735 130 : AlaTyrMetSerThrThrIlePheValThrGluProIlePheProArgIleValAsnIle : 149 ||||||!!:!!!:!! !:!:|||:!! !! !||| !!|||:!:|||||| AlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArgLeuValAsnSer 11478 : GCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGATTGGTGAACTCG : 11535 150 : PheValGluThrAsnGluThrIleProLeuLysLeuAlaLeuProLeuGluTyrIleIle : 169 !:! ! ! !||| !||| ! !|||:!!!!!!.!:!!||| ! ! |||.!!:!! TyrLysThrGlnAsnIleThrProSerLeuGlnPheValIleProGlyTyrTyrPheVal 11536 : TACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTC : 11595 170 : IleAspIleAspLysHisTyrTrpLeuIleLeuThrIleThrAsnIlePheValPheAsn : 189 !!!::!!!!: ! :!!|||!:::!!|||||| ! !||| ! |||!!.! ! AspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThr---CysThrValLeuIle 11596 : GACGAAGTAGAATACTATTATTACATCATACTTCACGGAACG---TGCACAGTTTTGATT : 11652 190 : IleIleIleValIleIleSerCysAspIleValLeuIleThrPheValGlnHisValCys : 209 :!!:!::!:||| ! !:!!||||||! ! !! !!!:..!.!.|||||||||..!||| ValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCys 11653 : GTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGC : 11712 210 : GlyLeuPheAlaValValGly : 216 |||||||||||||||!.!||| GlyLeuPheAlaValAlaGly 11713 : GGACTGTTCGCCGTGGCCGGG : 11735 vulgar: gi|861722441|gb|AKO89983.1| 129 216 . LHQN01025741.1 11477 11735 + 137 M 54 162 G 1 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11478 11735 137 + . gene_id 1 ; sequence gi|861722441|gb|AKO89983.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11478 11735 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11478 11735 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 11478 11735 137 + . alignment_id 1 ; Query gi|861722441|gb|AKO89983.1| ; Align 11478 130 162 ; Align 11640 185 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722441|gb|AKO89983.1| odorant receptor 19 [Microplitis mediator] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 131 -> 229 Target range: 4990 -> 5281 132 : MetSerThrThrIlePheValThrGluProIlePheProArgIleValAsnIlePheValGl : 152 :!:!!!.!!.!!:!!|||:!! ! !|||.!! ! !!! !|||:!!:!!|||.!!:!! LeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetPr 4991 : TTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCC : 5051 153 : uThrAsnGluThrIleProLeuLysLeuAlaLeuProLeuGluTyrIleIleIleAspIleA : 173 ! !||||||||| ! !!! ! !!!!!.!! !||| ! ||| !.!!:!!||| | oLeuAsnGluThrArgAlaArgLeuPheValTyrPro---AlaTyrTyrPheValAspGluA 5052 : GTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCA---GCTTACTATTTCGTCGACGAGG : 5111 174 : spLysHisTyrTrpLeuIleLeuThrIleThrAsnIlePheValPheAsnIleIleIleVal : 193 |||||:!!:!!!::||||||:!! ! !! ! !!:!! ! ||| ! ! :!!||| !||| spLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerVal 5112 : ACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTT : 5171 194 : IleIleSerCysAspIleValLeuIleThrPheValGlnHisValCysGlyLeuPheAlaVa : 214 .!! !:!!|||||| ! !! !:!: ! !|||||||||!.!|||||||||!!.|||:! PheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIl 5172 : TTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCAT : 5234 215 : lValGlyCysArgLeuGluSerThrProPheAspGluAsnTyrLeu : 229 !!.!|||! !:!!:!!.!! ! !.!.!!:.!...!!:!||| eAlaGly***LeuValGlnGlyGlnLeuMetGluAsnGlyPheLeu 5235 : TGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAATGGTTTTCTT : 5281 vulgar: gi|861722441|gb|AKO89983.1| 131 229 . LHQN01025741.1 4990 5281 + 113 M 33 99 G 1 0 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4991 5281 113 + . gene_id 2 ; sequence gi|861722441|gb|AKO89983.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4991 5281 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4991 5281 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 4991 5281 113 + . alignment_id 2 ; Query gi|861722441|gb|AKO89983.1| ; Align 4991 132 99 ; Align 5090 166 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722441|gb|AKO89983.1| odorant receptor 19 [Microplitis mediator] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 111 Query range: 134 -> 216 Target range: 1588 -> 1831 135 : ThrIlePheValThrGluProIlePheProArgIleValAsnIlePheValGluThrAsnGl : 155 ..!||||||..!:!!! ! !!||| ||||||:!!:!!:!!:!!.!! ! !! !||||| ValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGl 1589 : GTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGA : 1649 156 : uThrIleProLeuLysLeuAlaLeuProLeuGluTyrIleIleIleAspIleAspLysHisT : 176 |:!! ! !:!! ! !!! !! !||| ! !||| ! !:!!||| !!::!!|||| uSerArgGlyValAspPheIleTyrPro---AlaTyrTyrGlyLeuAspGluGluGluHisT 1650 : ATCGCGTGGGGTTGACTTCATTTATCCT---GCATACTACGGTCTCGACGAGGAGGAACATT : 1709 177 : yrTrpLeuIleLeuThrIleThrAsnIlePheValPheAsnIleIleIleValIleIleSer : 196 ||!:::!!:!::!! ! !! ! ! ! ! :!! ! :!:.!!.!!||| !|||||| yrTyrIleLeuMetGlyHisMetLeuCysValIleThrValValPhePheValTyrIleSer 1710 : ATTACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTCTACATCTCC : 1769 197 : CysAspIleValLeuIleThrPheValGlnHisValCysGlyLeuPheAlaValValGly : 216 ||||||! :!!! !!!:!.!.!!|||||||||!.!|||||||||.!. !||| !||| CysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnValSerGly 1770 : TGTGACACGATCTACATGAATATCGTGCAACACGCGTGCGGATTACTGAACGTCTCTGGG : 1831 vulgar: gi|861722441|gb|AKO89983.1| 134 216 . LHQN01025741.1 1588 1831 + 111 M 30 90 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1589 1831 111 + . gene_id 3 ; sequence gi|861722441|gb|AKO89983.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1589 1831 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1589 1831 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 1589 1831 111 + . alignment_id 3 ; Query gi|861722441|gb|AKO89983.1| ; Align 1589 135 90 ; Align 1679 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722450|gb|AKO89986.1| odorant receptor 22 [Microplitis mediator] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 100 Query range: 167 -> 221 Target range: 5080 -> 5242 168 : LeuPheHisValGluTyrPheTyrAspLeuGluLysTyrTyrTyrProLeuLeuIleHisSe : 188 :!!!:!! !.! ! |||||| !||| !!!:||||||:!!||| !:!!:!! |||! ValTyrProAlaTyrTyrPheValAspGluAspLysTyrHisTyrLeuIleValGlyHisMe 5081 : GTCTATCCAGCTTACTATTTCGTCGACGAGGACAAATATCATTACTTGATCGTAGGGCATAT : 5141 189 : rTyrPheGlyThrMetAlaTyrMetThrValAlaValAlaIleAspSerMetPheMetValT : 209 !|||.!!! !..!:!: ! !!!::!!||| ! !||| !|||:!!! !:!:!! ! tTyrLeuValValValMetLeuIleSerValPheCysAlaCysAspAlaAsnTyrValTyrA 5142 : GTATCTTGTAGTGGTAATGCTTATCTCTGTTTTCTGCGCCTGCGATGCCAATTACGTGTACG : 5204 210 : yrValGlnHisAlaCysAlaIlePheAlaValIleGly : 221 !|||||||||||||||!.!:!:!!.|||:!! !||| laValGlnHisAlaCysGlyLeuLeuAlaIleAlaGly 5205 : CCGTGCAACACGCTTGCGGATTGTTGGCCATTGCAGGG : 5242 vulgar: gi|861722450|gb|AKO89986.1| 167 221 . LHQN01025741.1 5080 5242 + 100 M 54 162 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 5081 5242 100 + . gene_id 1 ; sequence gi|861722450|gb|AKO89986.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 5081 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 5081 5242 . + . insertions 0 ; deletions 0 LHQN01025741.1 exonerate:protein2genome:local similarity 5081 5242 100 + . alignment_id 1 ; Query gi|861722450|gb|AKO89986.1| ; Align 5081 168 162 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722465|gb|AKO89991.1| odorant receptor 27 [Microplitis mediator] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 108 Query range: 129 -> 216 Target range: 11477 -> 11735 130 : ValTyrAlaAlaThrValGlnPheIleThrGluProValLeuProIleIleLeuAsnAsn : 149 !.!||| !..!:!! !! !|||||| !! !||| ! ! !! !:!::!!|||::: AlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArgLeuValAsnSer 11478 : GCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGATTGGTGAACTCG : 11535 150 : IleLeuArgThrAsnLeuSerAlaProHisLysPheAlaAspProMetGluTrpIleIle : 169 ! !! ! !|||:!!!!! !! ! :!!|||!.! ||| ! !::.!!:!! TyrLysThrGlnAsnIleThrProSerLeuGlnPheValIleProGlyTyrTyrPheVal 11536 : TACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCCGGATATTACTTCGTC : 11595 170 : IleAspLysGluLysTyrTyrTrpIleLeuLeuSerAsnSerSerValCysIleMetVal : 189 !!!: !||| ! ||||||!::|||:!!||| :!!.!!!!! ! :!!:!!:!! AspGluValGluTyrTyrTyrTyrIleIleLeu---HisGlyThrCysThrValLeuIle 11596 : GACGAAGTAGAATACTATTATTACATCATACTT---CACGGAACGTGCACAGTTTTGATT : 11652 190 : IleLeuThrValLeuIleSerTyrAspValIlePheIleThrPheValTyrHisAlaCys : 209 :!!:!!..!|||! ! !:!!! !|||..!! !!:!!!:..!.!.||| ! |||.!!||| ValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCys 11653 : GTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGC : 11712 210 : GlyLeuPheAlaIleThrGly : 216 ||||||||||||:!:.!!||| GlyLeuPheAlaValAlaGly 11713 : GGACTGTTCGCCGTGGCCGGG : 11735 vulgar: gi|861722465|gb|AKO89991.1| 129 216 . LHQN01025741.1 11477 11735 + 108 M 51 153 G 1 0 M 35 105 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11478 11735 108 + . gene_id 1 ; sequence gi|861722465|gb|AKO89991.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11478 11735 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11478 11735 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 11478 11735 108 + . alignment_id 1 ; Query gi|861722465|gb|AKO89991.1| ; Align 11478 130 153 ; Align 11631 182 105 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722462|gb|AKO89990.1| odorant receptor 26 [Microplitis mediator] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 142 Query range: 129 -> 216 Target range: 11477 -> 11735 130 : AlaTyrMetSerAlaThrIlePheValLeuGluProValPheProArgIleLeuAsnVal : 149 ||||||!!:!!!:!! !:!:|||:!!! !! !||| ! !!|||:!::!!||| ! AlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArgLeuValAsnSer 11478 : GCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGATTGGTGAACTCG : 11535 150 : PheIleSerValAsnAlaThrAspProPheLysLeuAlaLeuProLeuGluTyrIleIle : 169 !:!! !!! !||| !||| !!!.:!!!!!!.!:!!||| ! !||| !.!! TyrLysThrGlnAsnIleThrProSerLeuGlnPheValIlePro---GlyTyrTyrPhe 11536 : TACAAGACACAGAATATAACGCCAAGTTTGCAATTCGTCATACCC---GGATATTACTTC : 11592 170 : IleAspArgGluLysHisTyrTrpIleMetLeuPheValSerThrValPheValTyrAsn : 189 :!!|||..!! !:!!:!!|||!:: !!!::!!.!! !.!!||| ! |||! ! ! ValAspGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeuIle 11593 : GTCGACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTGATT : 11652 190 : IleIleIleValLeuValSerCysAspIleMetTyrIleThrPheValGlnHisValCys : 209 :!!:!::!:|||! ! !:!!||||||! !! |||!!:..!.!.|||||||||..!||| ValValValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCys 11653 : GTAGTGGTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGC : 11712 210 : GlyLeuPheAlaValValGly : 216 |||||||||||||||!.!||| GlyLeuPheAlaValAlaGly 11713 : GGACTGTTCGCCGTGGCCGGG : 11735 vulgar: gi|861722462|gb|AKO89990.1| 129 216 . LHQN01025741.1 11477 11735 + 142 M 35 105 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 11478 11735 142 + . gene_id 1 ; sequence gi|861722462|gb|AKO89990.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 11478 11735 . + . LHQN01025741.1 exonerate:protein2genome:local exon 11478 11735 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 11478 11735 142 + . alignment_id 1 ; Query gi|861722462|gb|AKO89990.1| ; Align 11478 130 105 ; Align 11583 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722462|gb|AKO89990.1| odorant receptor 26 [Microplitis mediator] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 115 Query range: 134 -> 216 Target range: 1588 -> 1831 135 : ThrIlePheValLeuGluProValPheProArgIleLeuAsnValPheIleSerValAsnAl : 155 ..!||||||..!! !! ! !!:!! ||||||:!!|||:!!:!!.!! ! !! !|||! ValIlePheThrSerValAlaIleThrProArgValLeuAspLeuIleSerProLysAsnGl 1589 : GTTATATTCACCTCAGTGGCGATTACGCCTCGTGTTCTCGACCTTATTTCACCGAAAAACGA : 1649 156 : aThrAspProPheLysLeuAlaLeuProLeuGluTyrIleIleIleAspArgGluLysHisT : 176 !:!! ! ! !! ! !!! !! !||| ! !||| ! !:!!|||..!|||:!!|||| uSerArgGlyValAspPheIleTyrPro---AlaTyrTyrGlyLeuAspGluGluGluHisT 1650 : ATCGCGTGGGGTTGACTTCATTTATCCT---GCATACTACGGTCTCGACGAGGAGGAACATT : 1709 177 : yrTrpIleMetLeuPheValSerThrValPheValTyrAsnIleIleIleValLeuValSer : 196 ||!::|||:!!:!! ! !! ! ! ! ! :!! ! :!:.!!.!!|||! !:!!||| yrTyrIleLeuMetGlyHisMetLeuCysValIleThrValValPhePheValTyrIleSer 1710 : ATTACATTCTGATGGGTCACATGCTCTGCGTGATAACTGTAGTGTTTTTCGTCTACATCTCC : 1769 197 : CysAspIleMetTyrIleThrPheValGlnHisValCysGlyLeuPheAlaValValGly : 216 ||||||! !!:|||!!:!.!.!!|||||||||!.!|||||||||.!. !||| !||| CysAspThrIleTyrMetAsnIleValGlnHisAlaCysGlyLeuLeuAsnValSerGly 1770 : TGTGACACGATCTACATGAATATCGTGCAACACGCGTGCGGATTACTGAACGTCTCTGGG : 1831 vulgar: gi|861722462|gb|AKO89990.1| 134 216 . LHQN01025741.1 1588 1831 + 115 M 30 90 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 1589 1831 115 + . gene_id 2 ; sequence gi|861722462|gb|AKO89990.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 1589 1831 . + . LHQN01025741.1 exonerate:protein2genome:local exon 1589 1831 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 1589 1831 115 + . alignment_id 2 ; Query gi|861722462|gb|AKO89990.1| ; Align 1589 135 90 ; Align 1679 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722462|gb|AKO89990.1| odorant receptor 26 [Microplitis mediator] Target: LHQN01025741.1 Habropoda laboriosa contig25741, whole genome shotgun sequence Model: protein2genome:local Raw score: 113 Query range: 131 -> 216 Target range: 4990 -> 5242 132 : MetSerAlaThrIlePheValLeuGluProValPheProArgIleLeuAsnValPheIleSe : 152 :!:!!!|||.!!:!!|||:!!! ! !||| !! ! !!! !||||||:!!:!!.!!!!: ! LeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetPr 4991 : TTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCC : 5051 153 : rValAsnAlaThrAspProPheLysLeuAlaLeuProLeuGluTyrIleIleIleAspArgG : 173 !:!!|||! !||| !! !!!!!.!! !||| ! ||| !.!!:!!|||..!! oLeuAsnGluThrArgAlaArgLeuPheValTyrPro---AlaTyrTyrPheValAspGluA 5052 : GTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCA---GCTTACTATTTCGTCGACGAGG : 5111 174 : luLysHisTyrTrpIleMetLeuPheValSerThrValPheValTyrAsnIleIleIleVal : 193 !:|||:!!:!!!:::!:!!::!! !! ! !:!! ! ||| ! :!!||| !||| spLysTyrHisTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerVal 5112 : ACAAATATCATTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTT : 5171 194 : LeuValSerCysAspIleMetTyrIleThrPheValGlnHisValCysGlyLeuPheAlaVa : 214 !!! !:!!|||||| !! |||:!: ! !|||||||||!.!|||||||||!!.|||:! PheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIl 5172 : TTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCAT : 5234 215 : lValGly : 216 !!.!||| eAlaGly 5235 : TGCAGGG : 5242 vulgar: gi|861722462|gb|AKO89990.1| 131 216 . LHQN01025741.1 4990 5242 + 113 M 33 99 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01025741.1 exonerate:protein2genome:local gene 4991 5242 113 + . gene_id 3 ; sequence gi|861722462|gb|AKO89990.1| ; gene_orientation . LHQN01025741.1 exonerate:protein2genome:local cds 4991 5242 . + . LHQN01025741.1 exonerate:protein2genome:local exon 4991 5242 . + . insertions 0 ; deletions 1 LHQN01025741.1 exonerate:protein2genome:local similarity 4991 5242 113 + . alignment_id 3 ; Query gi|861722462|gb|AKO89990.1| ; Align 4991 132 99 ; Align 5090 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722441|gb|AKO89983.1| odorant receptor 19 [Microplitis mediator] Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 134 Query range: 129 -> 216 Target range: 1245 -> 987 130 : AlaTyrMetSerThrThrIlePheValThrGluProIlePheProArgIleValAsnIlePh : 150 ||||||!!:!!!:!! !:!:|||:!! !! !||| !!|||!!:|||||| !: AlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArgMetValAsnSerTy 1245 : GCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGAATGGTGAACTCGTA : 1185 151 : eValGluThrAsnGluThrIleProLeuLysLeuAlaLeuProLeuGluTyrIleIleIleA : 171 ! ! ! !||| !||| ! !||| !:!!!.!:!!||| ! ! |||.!!:!! !! rLysThrGlnAsnIleThrProSerLeuProValValValProGlyTyrTyrPheValAspG 1184 : CAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCCGGATATTACTTCGTCGACG : 1122 172 : spIleAspLysHisTyrTrpLeuIleLeuThrIleThrAsnIlePheValPheAsnIleIle : 191 !::!!!!: ! :!!|||!:::!!|||||| ! !||| ! |||!!.! !:!!:!: luValGluTyrTyrTyrTyrIleIleLeuHisGlyThr---CysThrValLeuIleValVal 1121 : AAGTAGAATACTATTATTACATCATACTTCACGGAACG---TGCACAGTTTTGATTGTAGTG : 1065 192 : IleValIleIleSerCysAspIleValLeuIleThrPheValGlnHisValCysGlyLeuPh : 212 :!:||| ! !:!!||||||! ! !! !!!:..!.!.|||||||||..!||||||||||| ValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPh 1064 : GTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTT : 1002 213 : eAlaValValGly : 216 |||||||!.!||| eAlaValAlaGly 1001 : CGCCGTGGCCGGG : 988 vulgar: gi|861722441|gb|AKO89983.1| 129 216 . LHQN01027734.1 1245 987 - 134 M 54 162 G 1 0 M 32 96 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 988 1245 134 - . gene_id 1 ; sequence gi|861722441|gb|AKO89983.1| ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 988 1245 . - . LHQN01027734.1 exonerate:protein2genome:local exon 988 1245 . - . insertions 0 ; deletions 1 LHQN01027734.1 exonerate:protein2genome:local similarity 988 1245 134 - . alignment_id 1 ; Query gi|861722441|gb|AKO89983.1| ; Align 1246 130 162 ; Align 1084 185 96 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722462|gb|AKO89990.1| odorant receptor 26 [Microplitis mediator] Target: LHQN01027734.1 Habropoda laboriosa contig27734, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 139 Query range: 129 -> 216 Target range: 1245 -> 987 130 : AlaTyrMetSerAlaThrIlePheValLeuGluProValPheProArgIleLeuAsnValPh : 150 ||||||!!:!!!:!! !:!:|||:!!! !! !||| ! !!|||!!::!!||| !!: AlaTyrIleCysSerPheLeuPheIleGlnValProTrpThrThrArgMetValAsnSerTy 1245 : GCGTACATTTGCTCGTTCTTGTTCATACAAGTGCCATGGACGACCCGAATGGTGAACTCGTA : 1185 151 : eIleSerValAsnAlaThrAspProPheLysLeuAlaLeuProLeuGluTyrIleIleIleA : 171 !! !!! !||| !||| !!!. !:!!!.!:!!||| ! !||| !.!!:!!| rLysThrGlnAsnIleThrProSerLeuProValValValPro---GlyTyrTyrPheValA 1184 : CAAGACACAGAATATAACGCCAAGTTTGCCAGTCGTCGTACCC---GGATATTACTTCGTCG : 1125 172 : spArgGluLysHisTyrTrpIleMetLeuPheValSerThrValPheValTyrAsnIleIle : 191 ||..!! !:!!:!!|||!:: !!!::!!.!! !.!!||| ! |||! ! !:!!:!: spGluValGluTyrTyrTyrTyrIleIleLeuHisGlyThrCysThrValLeuIleValVal 1124 : ACGAAGTAGAATACTATTATTACATCATACTTCACGGAACGTGCACAGTTTTGATTGTAGTG : 1065 192 : IleValLeuValSerCysAspIleMetTyrIleThrPheValGlnHisValCysGlyLeuPh : 212 :!:|||! ! !:!!||||||! !! |||!!:..!.!.|||||||||..!||||||||||| ValValTyrCysAlaCysAspThrSerTyrMetValLeuValGlnHisThrCysGlyLeuPh 1064 : GTGGTGTACTGTGCCTGCGACACCAGTTACATGGTACTGGTGCAACACACTTGCGGACTGTT : 1002 213 : eAlaValValGly : 216 |||||||!.!||| eAlaValAlaGly 1001 : CGCCGTGGCCGGG : 988 vulgar: gi|861722462|gb|AKO89990.1| 129 216 . LHQN01027734.1 1245 987 - 139 M 35 105 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01027734.1 exonerate:protein2genome:local gene 988 1245 139 - . gene_id 1 ; sequence gi|861722462|gb|AKO89990.1| ; gene_orientation . LHQN01027734.1 exonerate:protein2genome:local cds 988 1245 . - . LHQN01027734.1 exonerate:protein2genome:local exon 988 1245 . - . insertions 0 ; deletions 1 LHQN01027734.1 exonerate:protein2genome:local similarity 988 1245 139 - . alignment_id 1 ; Query gi|861722462|gb|AKO89990.1| ; Align 1246 130 105 ; Align 1141 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722462|gb|AKO89990.1| odorant receptor 26 [Microplitis mediator] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 131 -> 216 Target range: 5672 -> 5420 132 : MetSerAlaThrIlePheValLeuGluProValPheProArgIleLeuAsnValPheIleSe : 152 :!:!!!|||.!!:!!|||:!!! ! !||| !! ! !!! !||||||:!!:!!.!!!!: ! LeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetPr 5672 : TTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCC : 5612 153 : rValAsnAlaThrAspProPheLysLeuAlaLeuProLeuGluTyrIleIleIleAspArgG : 173 !:!!|||! !||| !! !!!!!.!! !||| ! ||| !.!!:!!|||..!! oLeuAsnGluThrArgAlaArgLeuPheValTyrPro---AlaTyrTyrPheValAspGluA 5611 : GTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCA---GCTTACTATTTCGTCGACGAGG : 5552 174 : luLysHisTyrTrpIleMetLeuPheValSerThrValPheValTyrAsnIleIleIleVal : 193 !:|||:!! !!:::!:!!::!! !! ! !:!! ! ||| ! :!!||| !||| spLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerVal 5551 : ACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTT : 5492 194 : LeuValSerCysAspIleMetTyrIleThrPheValGlnHisValCysGlyLeuPheAlaVa : 214 !!! !:!!|||||| !! |||:!: ! !|||||||||!.!|||||||||!!.|||:! PheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIl 5491 : TTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCAT : 5429 215 : lValGly : 216 !!.!||| eAlaGly 5428 : TGCAGGG : 5421 vulgar: gi|861722462|gb|AKO89990.1| 131 216 . LHQN01028732.1 5672 5420 - 109 M 33 99 G 1 0 M 51 153 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5421 5672 109 - . gene_id 1 ; sequence gi|861722462|gb|AKO89990.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5421 5672 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5421 5672 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5421 5672 109 - . alignment_id 1 ; Query gi|861722462|gb|AKO89990.1| ; Align 5673 132 99 ; Align 5574 166 153 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722441|gb|AKO89983.1| odorant receptor 19 [Microplitis mediator] Target: LHQN01028732.1 Habropoda laboriosa contig28732, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 109 Query range: 131 -> 229 Target range: 5672 -> 5381 132 : MetSerThrThrIlePheValThrGluProIlePheProArgIleValAsnIlePheValGl : 152 :!:!!!.!!.!!:!!|||:!! ! !|||.!! ! !!! !|||:!!:!!|||.!!:!! LeuCysAlaAlaLeuPheMetCysLeuProPheValSerProIleLeuAspIleLeuMetPr 5672 : TTATGCGCCGCTCTATTTATGTGCTTGCCGTTCGTGTCGCCGATTCTGGACATCCTTATGCC : 5612 153 : uThrAsnGluThrIleProLeuLysLeuAlaLeuProLeuGluTyrIleIleIleAspIleA : 173 ! !||||||||| ! !!! ! !!!!!.!! !||| ! ||| !.!!:!!||| | oLeuAsnGluThrArgAlaArgLeuPheValTyrPro---AlaTyrTyrPheValAspGluA 5611 : GTTGAACGAGACGCGAGCACGGTTGTTCGTCTATCCA---GCTTACTATTTCGTCGACGAGG : 5552 174 : spLysHisTyrTrpLeuIleLeuThrIleThrAsnIlePheValPheAsnIleIleIleVal : 193 |||||:!! !!::||||||:!! ! !! ! !!:!! ! ||| ! ! :!!||| !||| spLysTyrArgTyrLeuIleValGlyHisMetTyrLeuValValValMetLeuIleSerVal 5551 : ACAAATATCGTTACTTGATCGTAGGGCATATGTATCTTGTAGTGGTAATGCTTATCTCTGTT : 5492 194 : IleIleSerCysAspIleValLeuIleThrPheValGlnHisValCysGlyLeuPheAlaVa : 214 .!! !:!!|||||| ! !! !:!: ! !|||||||||!.!|||||||||!!.|||:! PheCysAlaCysAspAlaAsnTyrValTyrAlaValGlnHisAlaCysGlyLeuLeuAlaIl 5491 : TTCTGCGCCTGCGATGCCAATTACGTGTACGCCGTGCAACACGCTTGCGGATTGTTGGCCAT : 5429 215 : lValGlyCysArgLeuGluSerThrProPheAspGluAsnTyrLeu : 229 !!.!|||! !:!!:!!.!! ! !.!.!!:.!...!!:!||| eAlaGly***LeuValGlnGlyGlnLeuMetGluAsnGlyPheLeu 5428 : TGCAGGGTAATTAGTTCAAGGACAATTAATGGAAAATGGTTTTCTT : 5382 vulgar: gi|861722441|gb|AKO89983.1| 131 229 . LHQN01028732.1 5672 5381 - 109 M 33 99 G 1 0 M 64 192 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01028732.1 exonerate:protein2genome:local gene 5382 5672 109 - . gene_id 1 ; sequence gi|861722441|gb|AKO89983.1| ; gene_orientation . LHQN01028732.1 exonerate:protein2genome:local cds 5382 5672 . - . LHQN01028732.1 exonerate:protein2genome:local exon 5382 5672 . - . insertions 0 ; deletions 1 LHQN01028732.1 exonerate:protein2genome:local similarity 5382 5672 109 - . alignment_id 1 ; Query gi|861722441|gb|AKO89983.1| ; Align 5673 132 99 ; Align 5574 166 192 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722447|gb|AKO89985.1| odorant receptor 21 [Microplitis mediator] Target: LHQN01050134.1 Habropoda laboriosa contig50134, whole genome shotgun sequence Model: protein2genome:local Raw score: 122 Query range: 128 -> 214 Target range: 448 -> 706 129 : TyrMetTyrAlaThrMetLeuIleTyrPheCysMetProIleIleProLysValLeuAspIleV : 150 !:! !:! ! !:!:||| !!:! !!! !:!!! !|||:!!|||:!!:!!|||! !|||: PheSerPheLeuLeuLeuLeuGlyPheValPheLeuGlnIleLeuProGlnIleLeuGlyIleI 449 : TTCTCATTTTTGCTACTCCTTGGTTTCGTTTTCTTGCAAATTCTCCCGCAAATTTTAGGCATAA : 512 151 : alLeuProLeuAsnThrThrArgProGluLeuTyrLeuPheGluAlaGluTyrPheValAspGl : 171 !!! !||||||!.! !! !!.! !!.!. !! ||| !!..!.!!||||||||||||||| ! leSerProLeuThrGluIleAsnThrAsnLysLeuLeuValArgThrGluTyrPheValAspTy 513 : TTTCACCTCTAACCGAGATCAATACTAACAAATTACTCGTTCGAACCGAATACTTTGTCGACTA : 575 172 : nHisLysPheTyrTyrProIleLeuIleHisAlaTyrIleThrCysAlaValAlaValSerMet : 192 ! ! !:! !|||! !||| !||||||||| !|||.!! ! !::!|||!!!||| rLysAspTyrIleTyrLeuIleThrIleHisAlaThrIleAlaIleMetCysSerValThrMet 576 : CAAAGATTACATTTATCTAATCACGATCCACGCGACTATAGCAATAATGTGTAGTGTGACTATG : 638 193 : LeuValAlaPheAspThrGluTyrAlaIleGlnAlaLeuHisGlySerGlyIlePheSerAlaL : 214 ! !:!!::! !|||! ||| !:!!||| !||||||!!:|||..!!.!: GlnIleSerSerAspIleLeuAsnAsnIlePheMetMetHisIleSerGlyMetPheGluValI 639 : CAAATTAGCAGCGATAttttgaataacatatttatGATGCACATCAGTGGAATGTTCGAGGTAA : 704 215 : eu : 214 !! le 705 : TT : 706 vulgar: gi|861722447|gb|AKO89985.1| 128 214 . LHQN01050134.1 448 706 + 122 M 86 258 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01050134.1 exonerate:protein2genome:local gene 449 706 122 + . gene_id 1 ; sequence gi|861722447|gb|AKO89985.1| ; gene_orientation . LHQN01050134.1 exonerate:protein2genome:local cds 449 706 . + . LHQN01050134.1 exonerate:protein2genome:local exon 449 706 . + . insertions 0 ; deletions 0 LHQN01050134.1 exonerate:protein2genome:local similarity 449 706 122 + . alignment_id 1 ; Query gi|861722447|gb|AKO89985.1| ; Align 449 129 258 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722435|gb|AKO89981.1| odorant receptor 17 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence Model: protein2genome:local Raw score: 136 Query range: 20 -> 115 Target range: 454103 -> 454388 21 : ArgTyrSerGlyValTrpProLeuLeuProThrAlaLysIleGlyTrpLysValPheA : 40 ||||||||||||:!:||| ::: !..! ! !! !:!! ! ArgTyrSerGlyLeuTrpLysIleGluSerLysHisSerSerPheMetThrIleAlaT 454104 : AGATACAGTGGCCTctggaaaattgaatcgaaacACTCGTCGTTTATGACAATCGCTT : 454161 41 : snPheIleTyrArgIlePheAsnLeuThrValPheIlePheTyrLeuIleThrLeuGl : 59 !!||| |||!:!:!!!::! |||! !:!!.!.! ! ! !:! !:!!|||:!! yrPheAlaTyrLysLeuTrpIleLeuIleMetMetAsnValPheAlaValThrIlePh 454162 : ACTTCGCGTACAAACTATGGATACTCATAATGATGAACGTATTCGCCGTCACTATATT : 454218 60 : yAlaAspAlaValThrAsnTyrLysAspLeuThrIlePheGlySerAspGlyCysTyr : 78 !|||||| ! ! !||| ! :!!|||:!!|||.!!.!!..!|||||||||!:! eAlaAspIleTyrGluAsnMetAspAsnLeuSerIleIleSerAspAspGlyCysPhe 454219 : CGCAGACATCTACGAGAACATGGACAACCTATCGATCATTAGCGACGACGGTTGTTTC : 454275 79 : PhePheGlyThrCysMetCysValPheLysAlaCysLysPheTrpAlaSerTyrHisL : 98 .!! !|||! ! !:!: :!!||||||||| !!.!:! ! ! . LeuAlaGlyIleLeuValValIlePheLysAlaMetAsnTyrGlnIleHisGlnLysS 454276 : CTCGCTGGAATACTCGTCGTGATTTTTAAGGCTATGAATTACCAAATTCATCagaaaa : 454335 99 : ysIleIleLysLeuIleValAspValTyrAspProIleAspValLeuValArg : 115 ..||||||||||||:!!! !|||:!!! :!! ! !|||! !||| !||| erIleIleLysLeuLeuAspAspIleLeuAsnCysAlaAspAspLeuCysArg 454336 : gtataattaaattgCTCGACGACATATTGAACTGTGCTGATGATCTCTGCAGA : 454388 vulgar: gi|861722435|gb|AKO89981.1| 20 115 . KQ414618.1 454103 454388 + 136 M 95 285 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 454104 454388 136 + . gene_id 1 ; sequence gi|861722435|gb|AKO89981.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 454104 454388 . + . KQ414618.1 exonerate:protein2genome:local exon 454104 454388 . + . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 454104 454388 136 + . alignment_id 1 ; Query gi|861722435|gb|AKO89981.1| ; Align 454104 21 285 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722432|gb|AKO89980.1| odorant receptor 16 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 307 Query range: 103 -> 239 Target range: 1058143 -> 1057735 104 : GlnGlnLeuGlySerAlaLeuAspGluPheIleLysLysAlaAsnGluSerGluLy : 122 ||| !||| !! !! !:!!!!:.!.||| !!:! ! |||!.!......||||| GlnValLeuTyrPheAspMetGluAsnPheCysArgTyrAlaThrSerLysGluLy 1058143 : CAGGTATTGTACTTCGACATGGAGAATTTCTGCAGATACGCCACCtcgaaggaaaa : 1058089 123 : sValIleLeuGlnArgTyrValAspAsnThrTrpLysPheHisGlyPheMetThrC : 141 ||||:::||||||||||||||||||!.. ! ! |||||||||.!! ! !! sValValLeuGlnArgTyrValAspArgTyrLysTyrPheHisGlyIleTyrIleL 1058088 : agttgtcCTGCAACGATACGTGGACAGATACAAATACTTTCATGGGATTTATATAT : 1058032 142 : ysSerTyrTyrLeuThrAlaThrAlaValLeuLeuGlyProLeuIleLeuProGln : 159 !!!! !!:!||||||.!!! ! !|||:!! !||||||||| !! !|||||| euTrpCysPheLeuThrThrIlePheValIleSerGlyProLeuTyrSerProGln 1058031 : TATGGTGCTTCCTCACGACCATCTTCGTCATAAGTGGTCCATTGTACTCACCACAG : 1057978 160 : LysPheProThrAspAlaValTyrProPheProValAspAsnGlnIleIleSerTy : 178 ! !||||||||| !!|||:!!|||||||||! !|||!!::!! !:!:.!!!.. ThrPheProThrHisAlaIleTyrProPheGlnValGluHisThrLeuPheLysIl 1057977 : ACGTTCCCCACTCATGCGATATATCCTTTCCAAGTGGAACATACACTGTTCAagat : 1057921 179 : rIleValTyrLeuHisGlnCysIleValGlyTyrGlnCysSerAlaGlyMetAlaL : 197 ::::::|||...||||||! :!!||||||!:!|||...|||||||||||||||: eValIleTyrPheHisGlnSerLeuValGlyPheGlnAlaSerAlaGlyMetAlaI 1057920 : tgttatttatttccatCAGTCGTTAGTTGGTTTTCAGGCGTCCGCTGGTATGGCCA : 1057864 198 : euAspCysGlnAlaAlaLeuPheLeuTrpTyrLeuSerAlaArgPheGluIleLeu : 215 !!||| !||| !||||||.!!||| ! ||| !:!!||||||||||||:!!||| leAspThrGlnIleAlaLeuLeuLeuArgTyrAlaAlaAlaArgPheGluLeuLeu 1057863 : TCGACACTCAAATTGCTCTTCTTCTGCGATACGCGGCTGCCAGGTTCGAGCTATTG : 1057810 216 : IleSerGluAlaLysAsnValGluThrPheAspGluLeuArgAsnTyrIleLysLy : 234 !!:!||| !::!|||!.!.!.||| ! !|||!!!!.! !! !|||:!!|| GlyAsnGluMetArgAsnAlaAsnThrHisCysGluPheAsnAlaCysIleGluLy 1057809 : GGAAACGAGATGCGAAATGCAAATACTCACTGTGAATTCAATGCCTGCATAGAGAA : 1057753 235 : sHisGlnIleIleLeu : 239 ||||... !:!!||| sHisSerGluLeuLeu 1057752 : GCACAGTGAACTTCTC : 1057736 vulgar: gi|861722432|gb|AKO89980.1| 103 239 . KQ414618.1 1058143 1057735 - 307 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1057736 1058143 307 - . gene_id 1 ; sequence gi|861722432|gb|AKO89980.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1057736 1058143 . - . KQ414618.1 exonerate:protein2genome:local exon 1057736 1058143 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1057736 1058143 307 - . alignment_id 1 ; Query gi|861722432|gb|AKO89980.1| ; Align 1058144 104 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722432|gb|AKO89980.1| odorant receptor 16 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 246 Query range: 102 -> 238 Target range: 1029179 -> 1028771 103 : LeuGlnGlnLeuGlySerAlaLeuAspGluPheIleLysLysAlaAsnGluSerGl : 121 ||||||:!!||| !..!! !:!! ! ! ! !:!!! !|||!!. !! !|| LeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGl 1029179 : TTGCAGAAACTAATCGAAGAAATGAAGATTTGCTGTGAAACAGCGAAACCATACGA : 1029125 122 : uLysValIleLeuGlnArgTyrValAspAsnThrTrpLysPheHisGlyPheMetT : 140 |!:!! !:!!!!!|||||||||||||||!!. !! !|||:!!! ! : uArgAspValPheGlnArgTyrValAspLysTyrSerLeuPheTyrValThrCysS 1029124 : AAGAGACGTCTTTCAACGATACGTCGATAAATACTCTTTATTTTACGTAACATGTT : 1029068 141 : hrCysSerTyrTyrLeuThrAlaThrAlaValLeuLeuGlyProLeuIleLeuPro : 158 !!! !!!!:!||||||||||||..! !:!!:!!|||||| !! !|||:!! !! erSerTrpPheTyrLeuThrAlaValIleMetValLeuGlySerArgIleIleSer 1029067 : CGTCGTGGTTTTACTTAACAGCAGTTATTATGGTTCTGGGAAGTCGGATTATATCT : 1029014 159 : GlnLysPheProThrAspAlaValTyrProPheProValAspAsnGlnIleIleSe : 177 .!. |||||||||:!!|||||||||||||||||||||:!! !:!! !:!:!! AspProPheProThrAsnAlaValTyrProPheProValAsnPheGluProLeuAr 1029013 : GATCCTTTTCCAACCAACGCCGTATATCCATTCCCTGTTAACTTTGAACCCTTGAG : 1028957 178 : rTyrIleValTyrLeuHisGlnCysIleValGlyTyrGlnCysSerAlaGlyMetA : 196 ! !|||:!!!:!:!!||||||! .!!|||||| ||||||:!!||| !! : gSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisThrS 1028956 : AAGTATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACACTA : 1028900 197 : laLeuAspCysGlnAlaAlaLeuPheLeuTrpTyrLeuSerAlaArgPheGluIle : 214 :!:!!:!! ! !.!!||||||!!.||| !:! !:!!||||||||||||||| erMetAsnValLeuThrAlaLeuLeuLeuLeuPheAlaAlaAlaArgPheGluIle 1028899 : GTATGAATGTGCTAACTGCATTGTTATTACTATTTGCTGCAGCTCGTTTCGAGATA : 1028846 215 : LeuIleSerGluAlaLysAsnValGluThrPheAspGluLeuArgAsnTyrIleLy : 233 |||!!:! !||| !!:!||||||... !.!!!!: !|||! !!!.! !!!:|| LeuMetMetGluLeuArgAsnValSerAspIleGluThrLeuIleLysCysMetLy 1028845 : CTGATGATGGAGCTGAGGAATGTCAGTGACATTGAAACACTGATTAAATGTATGAA : 1028789 234 : sLysHisGlnIleIle : 238 ||||:!!..!|||:!! sLysTyrSerIleVal 1028788 : AAAGTATTCGATCGTA : 1028772 vulgar: gi|861722432|gb|AKO89980.1| 102 238 . KQ414618.1 1029179 1028771 - 246 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1028772 1029179 246 - . gene_id 2 ; sequence gi|861722432|gb|AKO89980.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1028772 1029179 . - . KQ414618.1 exonerate:protein2genome:local exon 1028772 1029179 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1028772 1029179 246 - . alignment_id 2 ; Query gi|861722432|gb|AKO89980.1| ; Align 1029180 103 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722432|gb|AKO89980.1| odorant receptor 16 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 241 Query range: 102 -> 238 Target range: 1038346 -> 1037938 103 : LeuGlnGlnLeuGlySerAlaLeuAspGluPheIleLysLysAlaAsnGluSerGl : 121 ||||||:!!||| !..!! !:!! ! ! ! !:!!! !|||!!. !! !|| LeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGl 1038346 : TTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGA : 1038292 122 : uLysValIleLeuGlnArgTyrValAspAsnThrTrpLysPheHisGlyPheMetT : 140 |!:!! !:!!!!!||||||||||||:!!!!. |||::: : uArgAspValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysS 1038291 : AAGAGACGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTT : 1038235 141 : hrCysSerTyrTyrLeuThrAlaThrAlaValLeuLeuGlyProLeuIleLeuPro : 158 !!! !!!!:!||||||||||||! ! !:!!:!!|||||| !|||:!!:!! !! erSerTrpPheTyrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSer 1038234 : CGTCATGGTTTTACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCC : 1038181 159 : GlnLysPheProThrAspAlaValTyrProPheProValAspAsnGlnIleIleSe : 177 .!. |||||||||:!!|||||||||||||||||||||:!! !:!! !:!:!! AspProPheProThrAsnAlaValTyrProPheProValAsnPheGluProLeuAr 1038180 : GATCCTTTTCCAACCAACGCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAG : 1038124 178 : rTyrIleValTyrLeuHisGlnCysIleValGlyTyrGlnCysSerAlaGlyMetA : 196 ! !|||:!!!:!:!!||||||! .!!|||||| ||||||:!!||| ! : gSerIleIlePheMetHisGlnSerPheValGlyIleGlnCysAlaAlaHisAlaS 1038123 : AAGCATCATTTTTATGCACCAATCGTTCGTTGGCATACAGTGTGCTGCACACGCTA : 1038067 197 : laLeuAspCysGlnAlaAlaLeuPheLeuTrpTyrLeuSerAlaArgPheGluIle : 214 :!:!!:!! ! :!!||||||!!.||| !:! !!!!||||||||||||||| erMetAsnValLeuSerAlaLeuLeuLeuLeuPheThrThrAlaArgPheGluIle 1038066 : GTATGAATGTGCTTTCTGCACTGTTATTGCTATTCACTACAGCtcgtttcgaaata : 1038013 215 : LeuIleSerGluAlaLysAsnValGluThrPheAspGluLeuArgAsnTyrIleLy : 233 |||:!:!!!||| !!:!||||||.!. !.!!!!: !|||! !!!. !!!:|| LeuMetThrGluLeuArgAsnValAsnAspIleGluThrLeuIleLysSerMetLy 1038012 : ttgaTGACGGAGTTGAGGAATGTCAATGATATCGAAACACTGATTAAGAGTATGAA : 1037956 234 : sLysHisGlnIleIle : 238 ||||:!!..!! !:!: sLysTyrSerThrVal 1037955 : AAAGTATTCGACTGTG : 1037939 vulgar: gi|861722432|gb|AKO89980.1| 102 238 . KQ414618.1 1038346 1037938 - 241 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1037939 1038346 241 - . gene_id 3 ; sequence gi|861722432|gb|AKO89980.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1037939 1038346 . - . KQ414618.1 exonerate:protein2genome:local exon 1037939 1038346 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1037939 1038346 241 - . alignment_id 3 ; Query gi|861722432|gb|AKO89980.1| ; Align 1038347 103 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722432|gb|AKO89980.1| odorant receptor 16 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 221 Query range: 99 -> 238 Target range: 1052965 -> 1052548 100 : HisLysGluLeuGlnGlnLeuGlySerAlaLeuAspGluPheIleLysLysAlaAs : 118 :!! ...||||||!:!:!! !!!!! !:!! ! !!:!:!!|||:!!|||.! TyrGlySerLeuGlnArgIleIleThrGluMetIleThrTyrValLysGluAlaGl 1052965 : TATGGTTCTTTACAGCGAATAATTACAGAAATGATCACGTACGTCAAAGAGGCGCA : 1052911 119 : nGluSerGluLysValIleLeuGlnArgTyrValAspAsnThrTrpLysPheHisG : 137 .:!!! !|||!:!! !||||||!!.!.!|||:!!.!.!!. ! |||:!!| nGlnPheGluArgGluIleLeuHisAsnTyrIleGlnLysCysLysLeuPheTyrG 1052910 : GCAATTCGAAAGGGAAATTCTCCACAACTATATCCAAAAATGCAAACTTTTTTACG : 1052854 138 : lyPheMetThrCysSerTyrTyrLeuThrAlaThrAlaValLeuLeuGlyProLeu : 155 || ! ! ! !!!! |||||| !||||||..! !!:!!|||||||||:!! lyGlySerLeuIleTrpThrTyrLeuCysAlaThrCysPheValLeuGlyProVal 1052853 : GTGGTTCGTTAATTTGGACATACCTCTGTGCAACTTGTTTCGTATTAGGACCCGTT : 1052800 156 : IleLeuProGlnLysPheProThrAspAlaValTyrProPheProValAspAsnGl : 174 :!!||||||.!. ||||||!:!..!|||! !|||||||||! !|||:!!..! ValLeuProAsnProPheProSerSerAlaGluTyrProPheArgValAsnArgTh 1052799 : GTTCTACCAAATCCTTTTCCCAGCAGTGCAGAGTATCCGTTTCGCGTTAATCGTAC : 1052743 175 : nIleIleSerTyrIleValTyrLeuHisGlnCysIleValGlyTyrGlnCysSerA : 193 ! !!!:!:! !||||||||||||||||||! !.!!:!!.!!!:!|||! !|||| rProMetAsnAlaIleValTyrLeuHisGlnSerPheIleSerPheGlnTyrSerA 1052742 : ACCCATGAATGCTATTGTCTACCTGCACCAATCTTTCATAAGCTTTCAGTACAGTG : 1052686 194 : laGlyMetAlaLeuAspCysGlnAlaAlaLeuPheLeuTrpTyrLeuSerAlaArg : 211 || !!!:..!:!!..! ! !.!||||||!!.|||||| ! !:!!|||||| laHisIleCysValSerIlePheGlyAlaLeuLeuLeuTrpIleThrAlaAlaArg 1052685 : CACACATATGTGTAAGCATTTTCGGAGCTCTTTTACTCTGGATTACGGCTGCGAGA : 1052632 212 : PheGluIleLeuIleSerGluAlaLysAsnValGluThrPheAspGluLeuArgAs : 230 |||.!. !|||! ! !|||!.!:!!.!. !..!!:!.!! !! !|||! !! PheHisCysLeuThrLeuGluValGlnGlnSerSerSerIleHisMetLeuIleIl 1052631 : TTTCATTGCTTAACTCTGGAGGTTCAACAAAGTTCAAGTATTCATATGTTAATCAT : 1052575 231 : nTyrIleLysLysHisGlnIleIle : 238 !! !:!!||||||!!.! !:!!:!: eCysValLysLysGlnLeuLeuLeu 1052574 : CTGTGTTAAGAAACAGCTACTACTG : 1052549 vulgar: gi|861722432|gb|AKO89980.1| 99 238 . KQ414618.1 1052965 1052548 - 221 M 139 417 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1052549 1052965 221 - . gene_id 4 ; sequence gi|861722432|gb|AKO89980.1| ; gene_orientation . KQ414618.1 exonerate:protein2genome:local cds 1052549 1052965 . - . KQ414618.1 exonerate:protein2genome:local exon 1052549 1052965 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1052549 1052965 221 - . alignment_id 4 ; Query gi|861722432|gb|AKO89980.1| ; Align 1052966 100 417 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722432|gb|AKO89980.1| odorant receptor 16 [Microplitis mediator] Target: KQ414618.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold9, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 107 Query range: 236 -> 302 Target range: 1052489 -> 1052229 237 : IleIleLeuLeuTyrAlaLysGluLeuIleArgProThrArgLeuIleAlaPheVa : 255 ||||||!!! !||||||||||||:!!:!! ! ! !|||||||||!.!.!! IleIlePheArgTyrAlaLysGluValValAspGlyPheArgLeuIleValLeuAs 1052489 : ATAATTTTTAGGTACGCCAAAGAAGTGGTTGACGGTTTTCGGCTTATAGTACTCAA : 1052435 256 : lThrValValMetThrLysIleGlyMetIlePheGlyGlyIleValLeuIleSer : 274 !.!!:!!!.!|||!:!! :!:!.!:!:! !.!..!!.!!|||..!||||||! ! nAlaIleAlaMetSerIleLeuAlaLeuThrLeuSerSerIleThrLeuIleMet+ 1052434 : CGCTATAGCAATGAGCATTTTGGCTCTTACTCTAAGTAGTATTACATTAATAATGg : 1052378 275 : >>>> Target Intron 1 >>>> AspGluProValValIleLysIleGlnP : 283 62 bp !!: !|||:!!:!!:!:|||:!:|||| + ++GluIleProLeuIleValLysValGlnP 1052377 : t.........................agGAAATACCGTTAATTGTGAAAGTGCAAT : 1052289 284 : heAlaIleLeuValIleSerThrThrIleAsnIleTyrValCysAlaTrpAlaAla : 301 ||!.!! !:!! !.!!!!!..! ! !.!.||||||:!!! !||||||:!!||| heValThrValSerPheThrValLeuAlaGluIleTyrMetTyrAlaTrpSerAla 1052288 : TCGTAACTGTAAGCTTCACTGTACTCGCAGAAATTTATATGTACGCATGGTCAGCT : 1052235 302 : Asp : 302 ||| Asp 1052234 : GAC : 1052230 vulgar: gi|861722432|gb|AKO89980.1| 236 302 . KQ414618.1 1052489 1052229 - 107 M 37 111 5 0 2 I 0 58 3 0 2 M 29 87 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414618.1 exonerate:protein2genome:local gene 1052230 1052489 107 - . gene_id 5 ; sequence gi|861722432|gb|AKO89980.1| ; gene_orientation + KQ414618.1 exonerate:protein2genome:local cds 1052379 1052489 . - . KQ414618.1 exonerate:protein2genome:local exon 1052379 1052489 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local splice5 1052377 1052378 . - . intron_id 1 ; splice_site "GT" KQ414618.1 exonerate:protein2genome:local intron 1052317 1052378 . - . intron_id 1 KQ414618.1 exonerate:protein2genome:local splice3 1052317 1052318 . - . intron_id 0 ; splice_site "AG" KQ414618.1 exonerate:protein2genome:local cds 1052230 1052316 . - . KQ414618.1 exonerate:protein2genome:local exon 1052230 1052316 . - . insertions 0 ; deletions 0 KQ414618.1 exonerate:protein2genome:local similarity 1052230 1052489 107 - . alignment_id 5 ; Query gi|861722432|gb|AKO89980.1| ; Align 1052490 237 111 ; Align 1052317 274 87 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722426|gb|AKO89978.1| odorant receptor 14 [Microplitis mediator] Target: KQ414667.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold102, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 116 Query range: 353 -> 401 Target range: 801758 -> 801463 354 : GlyLysSerPheArgGlnAlaLeuLeuIleIleIleThrArgSerArgArgProCysV : 373 |||!.. !!||| !|||::!|||! !|||!!:!!:! !|||||||||! !|||||| GlySerArgPheSerGlnSerLeuGlnIleMetMetMetArgSerArgIleProCysL 801758 : GGTAGTCGTTTCTCTCAGAGTCTTCAGATCATGATGATGCGCTCGAGGATACCATGCA : 801701 374 : alLeuThrValGlyLysPheValProMetSerLeuGluThrPheThrAla >>>> T : 390 !:!!|||!.!!.!|||||| ! !||||||||||||!:!|||:!! ! ysIleThrAlaAlaLysPheTyrSerMetSerLeuGluSerPheSerLys++ 801700 : AGATAACCGCCGCTAAATTCTACAGCATGTCCTTGGAGAGCTTCTCGAAGgt...... : 801648 391 : arget Intron 1 >>>> ValPheAsnSerAlaLeuSerTyrPheThrIleLeu : 401 151 bp |||.!!!:!!!!:!!!!!||||||||||||:!!||| ++ValLeuSerThrSerPheSerTyrPheThrValLeu 801647 : ...................agGTACTCAGCACGTCTTTCTCCTACTTCACGGTCCTC : 801464 vulgar: gi|861722426|gb|AKO89978.1| 353 401 . KQ414667.1 801758 801463 - 116 M 36 108 5 0 2 I 0 147 3 0 2 M 12 36 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414667.1 exonerate:protein2genome:local gene 801464 801758 116 - . gene_id 1 ; sequence gi|861722426|gb|AKO89978.1| ; gene_orientation + KQ414667.1 exonerate:protein2genome:local cds 801651 801758 . - . KQ414667.1 exonerate:protein2genome:local exon 801651 801758 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local splice5 801649 801650 . - . intron_id 1 ; splice_site "GT" KQ414667.1 exonerate:protein2genome:local intron 801500 801650 . - . intron_id 1 KQ414667.1 exonerate:protein2genome:local splice3 801500 801501 . - . intron_id 0 ; splice_site "AG" KQ414667.1 exonerate:protein2genome:local cds 801464 801499 . - . KQ414667.1 exonerate:protein2genome:local exon 801464 801499 . - . insertions 0 ; deletions 0 KQ414667.1 exonerate:protein2genome:local similarity 801464 801758 116 - . alignment_id 1 ; Query gi|861722426|gb|AKO89978.1| ; Align 801759 354 108 ; Align 801500 390 36 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722426|gb|AKO89978.1| odorant receptor 14 [Microplitis mediator] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 358 Query range: 151 -> 407 Target range: 2882 -> 6471 152 : SerTyrGlyLysAsnAlaSerGluArgThrLeuProTyrAsnLeuTrpPheThrPheIlePr : 172 ||| ||||||||| |||!!:||| !||| ! !|||!!!|||.!! ! :!:|| SerIleGlyLysAsnGluSerAspArgLeuLeuIleValAsnPheTrpIleAsp---LeuPr 2883 : AgtattggaaaaaatgaatccGACAGGTTACTTATAGTCAACTTCTGGATTGAC---CTGCC : 2940 173 : oPheLysGluThrProTyrTyrGluIleCysPhePheLeuGln >>>> Target Intro : 187 |.!.! |||||||||||||||||| ||| :!!||| 406 bp oIleThrIleThrProTyrTyrGluIleLeuPheThrIleGln++ 2941 : GATAACCATCACACCATactatgaaatattatttacgaTACAGgt................. : 2987 188 : n 1 >>>> SerAlaAlaThrLeuThrThrGlyValCysAlaThrAlaPheAlaThrPheL : 204 ! ! ! !! !:!! !..! !!:!! !! ! !..!.!!! !!.!|||| ++IlePheIleIleMetTyrValCysIleSerTyrLeuCysIleAspAsnPheL 2988 : ........agATTTTTATCATAATGTACGTTTGCATAAGCTACCTTTGTATCGACAATTTTC : 3442 205 : euPheThrIleAsnLeuTyrAlaThrGlyGlnPheLysIleLeuGlnGlnArgLeuGluSer : 224 ||! !! !|||||||||:!!.!!.!! !||||||::!||||||||| ! ||||||..!!:! euCysMetIleAsnLeuHisThrAlaThrGlnPheArgIleLeuGlnTyrArgLeuSerAsn 3443 : TGTGCATGATCAATCTACACACAGCTACTCAATTTCGAATATTGCAATACAGACTGTCGAAT : 3502 225 : SerCysGlnValTyrAsnIleGluLysIleLysSerValGluGlnIleAsnLeuIleAlaGl : 245 !||| !.! ||| !...!.. ||| :::::: ! !! !:!!!! ValCysGlyAla---AsnGluArgSerAspLysIleSerLysLysThrProSerAsnSerAs 3503 : GTGTGCGGTGCA---AACGAACGTAgcgataaaatttcgaaaaaaacaCCGTCCAATTCGGA : 3562 246 : uGluSerTyrAlaAsnLeuArgLysCysValGluLeuHisAsnValLeuLeuLysTyrIleT : 266 :|||!!!||||||!!.!!!!:!!!.|||:!!:!!! !|||.!.!.!|||:!!:!!||| !! pGluCysTyrAlaLysPheLysAsnCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysA 3563 : CGAATGCTACGCTAAGTTCAAAAATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTA : 3625 267 : hrArgLeuGluAsnLeuTyrCysGlnIleMetLeuValGluThrLeuAlaCysValPheLeu : 286 .!!:!|||:!!.!.:!!!:! !! !.!!:!!|||!.!:!!..!||| !! ! !!!.||| snLysLeuGlnGluValPheGlyIlePheValLeuAlaGlnValLeuLeuPheSerLeuLeu 3626 : ACAAACTTCAAGAGGTGTTCGGTATATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTA : 3685 287 : IleCysThrThrGlyPheGlnIleValLeu{G} >>>> Target Intron 2 >>>> : 297 !!:||| ! !|||!:! !:!::!!:!!{ } 451 bp MetCysLeuAspGlyTyrLeuValMetVal{L}++ +- 3686 : ATGTGCCTCGATGGATATTTGGTGATGGTT{A}gt.........................ac : 4168 298 : {ly}ValAspSerSerIleLeuArgThrSerArgSerAlaLeuTyrPheCysCysLeuValT : 317 { !}! !|||!!! !!|||:!!!:! ! !! !! ! !!!!:!!.!. ! ! !:!! {ys}GluAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeuC 4169 : {AG}GAAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTGT : 4229 318 : hrGlnLeuLeuLeuTyrSerTrpSerCysHisGluIleIleIleGluSerLeuGluValAla : 337 !|||||||||:!!!:!!!!!::|||||| !! :!:||| !|||||||||.!.|||||| ysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAsnValAla 4230 : GCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAACGTGGCC : 4289 338 : GluAlaAlaTyrArgAlaTyrTrpTyrSerLeuSerTrpSerLysTyrGlyLysSerPheAr : 358 .!.||| !||| !..!! ||| ! !||| !! !..!!:!! !|||::!! !.!.|| AsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerGlyArgMetLeuAr 4290 : AATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTGGGCGAATGCTGCG : 4352 359 : gGlnAlaLeuLeuIleIleIleThrArgSerArgArgProCysValLeuThrValGlyLysP : 379 |:!!! !||| !.!!:!!||| !||||||||| !|||||| !||||||!.! !! !| gLysAspLeuThrPheValIleGlyArgSerArgValProCysCysLeuThrAlaCysGlyP 4353 : AAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGCTGTCTCACTGCTTGTGGAT : 4415 380 : heValProMetSerLeuGluThrPheThrAla >>>> Target Intron 3 >>>> V : 390 || !!|||:!!||||||||||||!:!|||:!! 1970 bp | hePheProValSerLeuGluThrTyrThrSer++ ++V 4416 : TCTTCCCTGTGTCACTGGAAACGTACACTTCGgt.........................agG : 6418 391 : alPheAsnSerAlaLeuSerTyrPheThrIleLeuArgGlnMetThrGluGlu : 407 ||.!.!:!!!!|||:!!||||||||||||:!:||||||||| ! !|||!!: alIleSerThrAlaValSerTyrPheThrLeuLeuArgGlnArgIleGluAsp 6419 : TTATAAGTACAGCAGTGTCGTACTTCACACTGTTAAGGCAACGTATAGAGGAC : 6471 vulgar: gi|861722426|gb|AKO89978.1| 151 407 . KQ414828.1 2882 6471 + 358 M 18 54 G 1 0 M 16 48 5 0 2 I 0 402 3 0 2 M 42 126 G 1 0 M 67 201 S 0 1 5 0 2 I 0 447 3 0 2 S 1 2 M 92 276 5 0 2 I 0 1966 3 0 2 M 18 54 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 2883 6471 358 + . gene_id 1 ; sequence gi|861722426|gb|AKO89978.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 2883 2984 . + . KQ414828.1 exonerate:protein2genome:local exon 2883 2984 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 2985 2986 . + . intron_id 1 ; splice_site "gt" KQ414828.1 exonerate:protein2genome:local intron 2985 3390 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 3389 3390 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 3391 3718 . + . KQ414828.1 exonerate:protein2genome:local exon 3391 3718 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 3719 3720 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 3719 4169 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 4168 4169 . + . intron_id 1 ; splice_site "AC" KQ414828.1 exonerate:protein2genome:local cds 4170 4447 . + . KQ414828.1 exonerate:protein2genome:local exon 4170 4447 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 4448 4449 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 4448 6417 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 6416 6417 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 6418 6471 . + . KQ414828.1 exonerate:protein2genome:local exon 6418 6471 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 2883 6471 358 + . alignment_id 1 ; Query gi|861722426|gb|AKO89978.1| ; Align 2883 152 54 ; Align 2937 171 48 ; Align 3391 187 126 ; Align 3517 230 201 ; Align 4172 298 276 ; Align 6418 390 54 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722426|gb|AKO89978.1| odorant receptor 14 [Microplitis mediator] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 324 Query range: 148 -> 411 Target range: 17818 -> 19921 149 : IleIleGluSerTyrGlyLysAsnAlaSerGluArgThrLeuProTyrAsnLeuTrpPhe : 168 |||:!: ::: ||||||||| |||||||||! !||||||!:!|||:!!||| !! IleLeuAlaAsnIleGlyLysAsnGluSerGluArgIleLeuProPheAsnMetTrpVal 17819 : ATTTTagcaaatattggaaaaaatgagTCAGAGAGGATACTTCCATTTAATATGTGGGTC : 17876 169 : ThrPheIleProPheLysGluThrProTyrTyrGluIleCysPhePheLeuGln >>>> : 187 !.! :!:|||!!...! !|||||||||||||||||| ||| |||||| Asn---LeuProLeuSerMetThrProTyrTyrGluIleThrPheSerLeuGln++ 17877 : AAC---TTGCCATTATCAATGACGCCATATTACgaaataactttttcattaCAGgt.... : 17932 188 : Target Intron 1 >>>> SerAlaAlaThrLeuThrThrGlyValCysAlaThrA : 199 110 bp ! !:!! !! ! !! !|||||| !! ! !. ++ValLeuSerLeuTyrHisIleGlyValSerTyrPheC 17933 : .....................aggtTCTGTCTCTGTACCATATTGGCGTGAGTTATTTCT : 18076 200 : laPheAlaThrPheLeuPheThrIleAsnLeuTyrAlaThrGlyGlnPheLysIleLeuG : 219 ..||| ...|||||| !!!:||||||:!!|||.!! !||||||::!:!!|||| ysPheAspAsnPheLeuCysIleMetAsnLeuHisAlaAlaThrGlnPheArgValLeuG 18077 : gcttcgacaattttttatgcatCATGAACTTGCACGCGGCTACTCAGTTTCGAGTATTGC : 18136 220 : lnGlnArgLeuGluSerSerCysGlnValTyrAsnIleGluLys<-><-><-><->IleL : 235 || ! |||:!!! !!:!! ! !.!.:!! ! ::: |||::: :::| lnTyrArgMetAlaAsnMetThrAspLeuLysAspLysGluArgLysGluArgAsnMetL 18137 : AATACCGAATGGCGAATATGACCGATTTAAAGGacaaagagaggaaagagagaaatatga : 18196 236 : ysSerValGluGlnIleAsnLeuIleAlaGluGluSerTyrAlaAsnLeuArgLysCysV : 255 ||!!! !! !... ! !.!!||| !|||!!!||| ! !|||!:! ! ! !: ysThrSerValSerSerAlaCysPheAlaThrGluCysTyrAsnValLeuLysAspTyrI 18197 : AGACAAGTGTGAGTTCGGCGTGCTTTGCAACAGAATGTTACAACGTTCTCAAAGATTATA : 18256 256 : alGluLeuHisAsnValLeuLeuLysTyrIleThrArgLeuGluAsnLeuTyrCysGlnI : 275 !!..!! !|||.!. !|||:!! ||| !!.!!:!||||||!!.:!!!:! ! | leArgGlnHisGlnAsnLeuIleAlaTyrCysAsnLysLeuGluLysValPheAsnIleI 18257 : TCAGACAGCATCAGAACCTGATTGCTTATTGCAACAAACTCGAGAAAGTGTTCAATATCA : 18316 276 : leMetLeuValGluThrLeuAlaCysValPheLeuIleCysThrThrGlyPheGlnIleV : 295 ||:!:|||! !:!! !||| !! ! !.!.||||||||| ! !||||||||||||: leValLeuGlyGlnLeuLeuMetPheSerMetLeuIleCysLeuAspGlyPheGlnIleL 18317 : TTGTTCTGGGGCAATTGTTAATGTTCAGCATGTTGATCTGTCTCGATGGATTTCAGATAC : 18376 296 : alLeu >>>> Target Intron 2 >>>> GlyValAspSerSerIleLeuArgTh : 305 !!:!! 975 bp !.! ! !!!!!! ! !||| euMet++ ++AlaAsnThrProThrArgThrArgLe 18377 : TTATGgt.........................agGCAAATACACCTACCAGAACCCGACT : 19381 306 : rSerArgSerAlaLeuTyrPheCysCysLeuValThrGlnLeuLeuLeuTyrSerTrpSe : 325 !! ! !! ! !! ! ...|||:!! !|||||||||:!!!:!!!!!::|| uIlePheIlePheHisIleGlyAlaCysMet---CysGlnLeuLeuMetPheThrTyrSe 19382 : GATTTTCATCTTTCACATAGGAGCATGCATG---TGTCAATTGCTGATGTTTACCTACAG : 19438 326 : rCysHisGluIleIleIleGluSerLeuGluValAlaGluAlaAlaTyrArgAlaTyrTr : 345 |||| !! ||||||! !|||||| !.....!|||||||||!.!|||!!!!.! !|| rCysAspCysIleIleArgGluSerThrSerThrAlaGluAlaValTyrSerGlyProTr 19439 : CTGCGACTGCATCATAAGAGAAAGCACGAGCACCGCCGAGGCGGTGTACAGCGGTCCCTG : 19498 346 : pTyrSerLeuSerTrpSerLysTyrGlyLysSerPheArgGlnAlaLeuLeuIleIleIl : 365 | !||| !! !||| ! !!||||||! !.!.|||:!!! !|||:!!:!!:!!|| pThrLeuLeuProMetSerAlaAspGlyLysMetIleArgLysAspLeuMetLeuValIl 19499 : GACACTTTTACCAATGAGCGCAGACGGAAAAATGATAAGGAAAGATTTGATGCTCGTTAT : 19558 366 : eThrArgSerArgArgProCysValLeuThrValGlyLysPheValProMetSerLeuGl : 385 |! !||||||!!! !|||||| !||||||!.! !! !||| !! !:!!|||||||| eMetArgSerSerValProCysCysLeuThrAlaArgGlyPhePheValValSerLeuGl 19559 : CATGAGATCGAGCGTACCTTGTTGCTTGACAGCCAGAGGATTCTTCGTCGTGTCTTTAGA : 19618 386 : uThrPheThrAla >>>> Target Intron 3 >>>> ValPheAsnSerAlaLeu : 395 ||||!:!|||!.! 223 bp |||!!.!:!!!!||| ! uThrTyrThrGly++ ++ValLeuSerThrAlaAla 19619 : AACGTACACAGGGgt.........................agGTTTTAAGCACCGCAGCC : 19871 396 : SerTyrPheThrIleLeuArgGlnMetThrGluGluMetGluAsnSer : 411 ||||||||||||:!:|||!:!|||! :!!|||.!. !!:!:!||| SerTyrPheThrLeuLeuLysGlnArgSerGluAsnAlaAspSerSer 19872 : TCATACTTTACGTTGCTGAAGCAAAGATCAGAGAATGCCGACAGTTCG : 19921 vulgar: gi|861722426|gb|AKO89978.1| 148 411 . KQ414828.1 17818 19921 + 324 M 21 63 G 1 0 M 16 48 5 0 2 I 0 106 3 0 2 M 47 141 G 0 12 M 63 189 5 0 2 I 0 971 3 0 2 M 19 57 G 1 0 M 73 219 5 0 2 I 0 219 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 17819 19921 324 + . gene_id 2 ; sequence gi|861722426|gb|AKO89978.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 17819 17929 . + . KQ414828.1 exonerate:protein2genome:local exon 17819 17929 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 17930 17931 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 17930 18039 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 18038 18039 . + . intron_id 0 ; splice_site "ag" KQ414828.1 exonerate:protein2genome:local cds 18040 18381 . + . KQ414828.1 exonerate:protein2genome:local exon 18040 18381 . + . insertions 12 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 18382 18383 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 18382 19356 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 19355 19356 . + . intron_id 1 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19357 19632 . + . KQ414828.1 exonerate:protein2genome:local exon 19357 19632 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 19633 19634 . + . intron_id 3 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 19633 19855 . + . intron_id 3 KQ414828.1 exonerate:protein2genome:local splice3 19854 19855 . + . intron_id 2 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 19856 19921 . + . KQ414828.1 exonerate:protein2genome:local exon 19856 19921 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 17819 19921 324 + . alignment_id 2 ; Query gi|861722426|gb|AKO89978.1| ; Align 17819 149 63 ; Align 17882 171 48 ; Align 18040 187 141 ; Align 18193 234 189 ; Align 19357 297 57 ; Align 19414 317 219 ; Align 19856 390 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722426|gb|AKO89978.1| odorant receptor 14 [Microplitis mediator] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 253 Query range: 192 -> 408 Target range: 10849 -> 13161 193 : ThrGlyValCysAlaThrAlaPheAlaThrPheLeuPheThrIleAsnLeuTyrAlaThr : 212 ||||||:!!||| ! !..!|||! !!.!.!!!!!! !! !!!:!:!:!!:!! !!:! ThrGlyIleCysTyrPheCysPheAspAsnIlePheCysIleMetSerValHisLeuSer 10850 : ACAGGAATCTGTTATTTCTGCTTCGACAATATTTTCTGCATCATGAGCGTGCATTTGAGT : 10907 213 : GlyGlnPheLysIleLeuGlnGlnArgLeuGluSerSerCysGlnVal<->TyrAsnIle : 231 |||||||||:::||||||||| ! |||||| !!.! !! !.!.||| |||.!.||| GlyGlnPheArgIleLeuGlnTyrArgLeuThrLysLeuSerAspValGlnTyrGlnIle 10908 : GGCCAGTTTCGCATACTTCAGTATAGATTGACGAAACTGTCCGACGTACAATATCAGATA : 10967 232 : GluLysIleLysSerValGluGlnIleAsnLeuIleAlaGluGluSerTyrAlaAsnLeu : 251 ...::: ... ... !:!:.!. ! !.!!.....!||||||! !!!.!!! SerGluLysAsnMetGluSerValLeuGluAspCysThrArgArgSerTyrGluLysPhe 10968 : AgcgagaaaaatatggaatcTGTATTGGAAGACTGTACACGTAGATCTTACGAGAAATTT : 11027 252 : ArgLysCysValGluLeuHisAsnValLeuLeuLysTyrIleThrArgLeuGluAsnLeu : 271 !:!!..! !|||..!! !|||.!...!|||:!! ! ||| ! !!:!||||||:!!:!! LysSerTyrValArgGlnHisGlnThrLeuIleAspTyrTyrGluLysLeuGluHisVal 11028 : AAGAGTTACGTTCGACAGCATCAAACGTTGATCGATTATTACGAGAAGCTTGAACACGTT : 11087 272 : TyrCysGlnIleMetLeuValGluThrLeuAlaCysValPheLeuIleCysThrThrGly : 291 ||| :!!|||!!:|||! !:!!..!||| !! ! ! ! ||||||||| ! !||| TyrThrLysIleIleLeuGlyGlnValLeuLeuPheSerValLeuIleCysLeuPheGly 11088 : TACACGAAAATTATACTTGGGCAAGTGTTACTGTTCAGTGTGTTAATTTGCCTCTTTGGT : 11147 292 : PheGlnIleValLeuGlyValAspSerSerIleLeuArgThr{S} >>>> Target I : 306 !:!||||||:!!|||! ! ! !||| ! !! !! ! !{!} 1296 TyrGlnIleLeuLeuValSerIleSerLeuProProThrGlu{T}-+ 11148 : TATCAGATATTATTGGTTAGTATTTCACTTCCTCCAACTGAA{T}tt............. : 11195 307 : ntron 1 >>>> {er}ArgSerAlaLeuTyrPheCysCysLeuValThrGlnLeuLeu : 320 bp {!!}|||||| !!!! ||| ! ! !! !.!!..!:!!||| +-{rp}ArgSerIlePheMetPheLeuIleCysGlyAlaMetValLeu 11196 : ............aa{GG}CGCAGTATTTTCATGTTCCTCATATGTGGCGCCATGGTTTTA : 12530 321 : Leu<-><->TyrSerTrpSerCysHisGluIleIleIleGluSerLeuGluValAlaGlu : 338 ||| !:!!!!!::||||||:!! !:!:||| !:!!||| !.!.:!!||| LeuPheMetPheThrTyrSerCysAsnMetValIleGluGlnSerAspAsnIleAlaPhe 12531 : TTGTTTATGTTCACCTACAGCTGCAATATGGTGATAGAACAAAGCGATAATATTGCTTTT : 12590 339 : AlaAlaTyrArgAlaTyrTrpTyrSerLeuSerTrpSerLysTyrGlyLysSerPheArg : 358 ||||||||| !||| ||| .!!:!! !! !!:!||| !||||||!.!.!.||| AlaAlaTyrSerAlaLeuTrpThrGlyMetProMetAsnLysThrGlyLysLysLeuArg 12591 : GCGGCGTATTCGGCACTATGGACGGGTATGCCAATGAACAAAACTGGCAAAAAGCTACGG : 12650 359 : GlnAlaLeuLeuIleIleIleThrArgSerArgArgProCysValLeuThrValGlyLys : 378 !!.! !|||:!!!!::!!||| !|||||||||||| !||| !||||||!.!..! ! HisAspLeuIleMetValIleGlyArgSerArgArgValCysCysLeuThrAlaAsnGly 12651 : CATGATTTGATAATGGTCATTGGGAGGTCTAGACGAGTTTGTTGTCTGACTGCGAATGGA : 12710 379 : PheValProMetSerLeuGluThrPheThr--{A} >>>> Target Intron 2 >> : 389 ||| !!|||:!!||||||||||||!:!|||##{!} 357 bp PhePheProValSerLeuGluThrTyrThr##{G}++ 12711 : TTTTTCCCTGTGTCCTTAGAAACTTATACTAC{G}gt....................... : 12748 390 : >> {la}ValPheAsnSerAlaLeuSerTyrPheThrIleLeuArgGlnMetThrGluG : 407 { !}:::...!:!!!!||| !||||||||||||:!!||||||.!.! ..!|||! +-{lu}IleLeuSerThrAlaAlaSerTyrPheThrLeuLeuArgAsnAsnValGluA 12749 : ..ac{ag}attttgAGTACCGCGGCGTCGTACTTCACATTATTGAGAAATAACGTAGAAG : 13156 408 : luMet : 408 !::!: spVal 13157 : ATGTA : 13161 vulgar: gi|861722426|gb|AKO89978.1| 192 408 . KQ414828.1 10849 13161 + 253 M 36 108 G 0 3 M 77 231 S 0 1 5 0 2 I 0 1292 3 0 2 S 1 2 M 15 45 G 0 6 M 67 201 F 0 2 S 0 1 5 0 2 I 0 353 3 0 2 S 1 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 10850 13161 253 + . gene_id 3 ; sequence gi|861722426|gb|AKO89978.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 10850 11192 . + . KQ414828.1 exonerate:protein2genome:local exon 10850 11192 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 11193 11194 . + . intron_id 1 ; splice_site "TT" KQ414828.1 exonerate:protein2genome:local intron 11193 12488 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 12487 12488 . + . intron_id 0 ; splice_site "AA" KQ414828.1 exonerate:protein2genome:local cds 12489 12745 . + . KQ414828.1 exonerate:protein2genome:local exon 12489 12745 . + . insertions 6 ; deletions 0 ; frameshifts 2 KQ414828.1 exonerate:protein2genome:local splice5 12746 12747 . + . intron_id 2 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 12746 13102 . + . intron_id 2 KQ414828.1 exonerate:protein2genome:local splice3 13101 13102 . + . intron_id 1 ; splice_site "ac" KQ414828.1 exonerate:protein2genome:local cds 13103 13161 . + . KQ414828.1 exonerate:protein2genome:local exon 13103 13161 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 10850 13161 253 + . alignment_id 3 ; Query gi|861722426|gb|AKO89978.1| ; Align 10850 193 108 ; Align 10961 229 231 ; Align 12491 307 45 ; Align 12542 322 201 ; Align 13105 390 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722426|gb|AKO89978.1| odorant receptor 14 [Microplitis mediator] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 206 Query range: 315 -> 411 Target range: 33597 -> 34325 316 : ValThrGlnLeuLeuLeuTyrSerTrpSerCysHisGluIleIleIleGluSerLeuGlu : 335 |||!:!||||||! !:!!!:!!!!!::||||||:!! |||! !! !|||||||||.!. ValSerGlnLeuTrpMetPheThrTyrSerCysAsnCysIleThrThrGluSerLeuAsn 33598 : GTGAGTCAACTATGGATGTTCACGTACAGTTGCAATTGCATAACAACAGAAAGCCTGAAC : 33655 336 : ValAlaGluAlaAlaTyrArgAlaTyrTrpTyrSerLeuSerTrpSerLysTyrGlyLys : 355 :!!||||||:!!!.!||| !!.! ||| !:!||| !! ...|||:::|||||| IleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLys 33656 : ATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaa : 33715 356 : SerPheArgGlnAlaLeuLeuIleIleIleThrArgSerArgArgProCysValLeuThr : 375 .!.|||:!!! !|||! !:!::!!||| !|||:!!|||||||||! !!.!|||||| LeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerAlaLeuThr 33716 : ctgCTAAGAAAGGATTTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACT : 33775 376 : ValGlyLysPheValProMetSerLeuGluThrPheThrAla >>>> Target Intr : 390 !.! !! !||| !! !!!!:!!!||||||||||||||| ! 440 bp AlaCysGlyPhePheSerIleThrLeuGluThrPheThrLys++ 33776 : GCCTGTGGATTCTTTTCTATAACTCTCGAAACCTTTACTAAGgt................ : 33822 391 : on 1 >>>> ValPheAsnSerAlaLeuSerTyrPheThrIleLeuArgGlnMetThrG : 406 :!!.!.!:!!!!:!!:!!||||||||||||:!!|||!:!|||! .!!| ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnSerAlaG 33823 : .........agATCATGAGTACATCAATGTCGTATTTCACCCTACTAAAACAAAGTGCCG : 34308 407 : luGluMetGluAsnSer : 411 ||!!:! ! !|||||| luAspThrValAsnSer 34309 : AGGACACAGTAAATTCG : 34325 vulgar: gi|861722426|gb|AKO89978.1| 315 411 . KQ414828.1 33597 34325 + 206 M 74 222 5 0 2 I 0 436 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 33598 34325 206 + . gene_id 4 ; sequence gi|861722426|gb|AKO89978.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 33598 33819 . + . KQ414828.1 exonerate:protein2genome:local exon 33598 33819 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 33820 33821 . + . intron_id 1 ; splice_site "Gt" KQ414828.1 exonerate:protein2genome:local intron 33820 34259 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 34258 34259 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 34260 34325 . + . KQ414828.1 exonerate:protein2genome:local exon 34260 34325 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 33598 34325 206 + . alignment_id 4 ; Query gi|861722426|gb|AKO89978.1| ; Align 33598 316 222 ; Align 34260 390 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722426|gb|AKO89978.1| odorant receptor 14 [Microplitis mediator] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 204 Query range: 315 -> 411 Target range: 28559 -> 29257 316 : ValThrGlnLeuLeuLeuTyrSerTrpSerCysHisGluIleIleIleGluSerLeuGlu : 335 |||!:!||||||! !:!!!:!!!!!::|||||| !! |||! !! !|||||||||.!. ValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsn 28560 : GTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAAC : 28617 336 : ValAlaGluAlaAlaTyrArgAlaTyrTrpTyrSerLeuSerTrpSerLysTyrGlyLys : 355 :!!||||||:!!!.!||| !!.! ||| !:!||| !! ...|||:::|||||| IleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLys 28618 : ATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaa : 28677 356 : SerPheArgGlnAlaLeuLeuIleIleIleThrArgSerArgArgProCysValLeuThr : 375 .!.|||:!!! !|||! !:!::!!||| !|||:!!|||||||||! ! !|||||| LeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThr 28678 : ctgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACT : 28737 376 : ValGlyLysPheValProMetSerLeuGluThrPheThrAla >>>> Target Intr : 390 !.! !! !||| !! !!!!:|||||||||||||||||| ! 410 bp AlaCysGlyPhePheSerIleSerLeuGluThrPheThrLys++ 28738 : GCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGgt................ : 28784 391 : on 1 >>>> ValPheAsnSerAlaLeuSerTyrPheThrIleLeuArgGlnMetThrG : 406 :!!.!.!:!!!!:!!:!!||||||||||||:!!|||!:!||| ! !| ++IleMetSerThrSerMetSerTyrPheThrLeuLeuLysGlnCysIleG 28785 : .........agATCATGAGTACATCAATGTCGTATTTCACATTATTAAAACAATGTATCG : 29240 407 : luGluMetGluAsnSer : 411 ||!!:! !! |||||| luAspThrValAsnSer 29241 : AGGACACGGTTAATTCG : 29257 vulgar: gi|861722426|gb|AKO89978.1| 315 411 . KQ414828.1 28559 29257 + 204 M 74 222 5 0 2 I 0 406 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 28560 29257 204 + . gene_id 5 ; sequence gi|861722426|gb|AKO89978.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 28560 28781 . + . KQ414828.1 exonerate:protein2genome:local exon 28560 28781 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 28782 28783 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 28782 29191 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 29190 29191 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 29192 29257 . + . KQ414828.1 exonerate:protein2genome:local exon 29192 29257 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 28560 29257 204 + . alignment_id 5 ; Query gi|861722426|gb|AKO89978.1| ; Align 28560 316 222 ; Align 29192 390 66 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722426|gb|AKO89978.1| odorant receptor 14 [Microplitis mediator] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 181 Query range: 148 -> 296 Target range: 37450 -> 38201 149 : IleIleGluSerTyrGlyLysAsnAlaSerGluArgThrLeuProTyrAsnLeuTrpPhe : 168 ||| !:! !|||||||||! !|||!!:||| !! ! !|||:!!:!!|||.!! IleSerAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 37451 : atttcagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 37508 169 : ThrPheIleProPheLysGluThrProTyrTyrGluIleCysPhePheLeuGln >>>> : 187 ! :!!|||!!.... !|||||||||||||||||| ::!.!.:!!||| Asp---LeuProLeuSerIleThrProTyrTyrGluIleThrTyrIleIleGln++ 37509 : GAT---CTACCATTATCCATAACAccatattatgaaattacttACATAATACAGgt.... : 37564 188 : Target Intron 1 >>>> SerAlaAlaThrLeuThrThrGlyValCysAlaThrA : 199 307 bp :!! !:!!..!! ! !..!.!!!.!||| ! !. ++AlaLeuSerValTyrGlnValSerAlaCysTyrLeuC 37565 : .....................agGCTTTATCTGTGTACCAAGTTAGCGCGTGTTACCTTT : 37905 200 : laPheAlaThrPheLeuPheThrIleAsnLeuTyrAlaThrGlyGlnPheLysIleLeuG : 219 .!||| ......||| ::: |||:!!!.!.!!|||||||||:::||||||| ysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIleLeuG 37906 : GCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATACTAC : 37965 220 : lnGlnArgLeuGluSerSerCysGlnValTyrAsnIleGluLys<->IleLysSerValG : 238 || ! |||:!!! !:! !! :!! !.!.|||! !||| ! !:!!!:! !. lnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluAsnProS 37966 : AATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAATCCAA : 38025 239 : luGlnIleAsnLeuIleAlaGluGluSerTyrAlaAsnLeuArgLysCysValGluLeuH : 258 .. ! !.!.||| !:!!|||:!!!!!||| !!!.!!!!:!!!.|||:!!:!!! !| erThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGlnGlnH 38026 : GCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAACAGC : 38085 259 : isAsnValLeuLeuLysTyrIleThrArgLeuGluAsnLeuTyrCysGlnIleMetLeuV : 278 ||.!.!.!|||:!!:!!!:! !.!!! !||||||.!.:!!!:! !||| |||! isGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleAlaLeuG 38086 : ATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATTGCACTCG : 38145 279 : alGluThrLeuAlaCysValPheLeuIleCysThrThrGlyPheGlnIleValLeu : 296 !:!!..!||| !! ! !.!.||||||||| !..!! !!:!||| !:!!||| lyGlnValLeuMetPheSerIleLeuIleCysPheValValTyrGlnAlaLeuLeu 38146 : GACAAGTCCTAATGTTTAGCATACTAATTTGCTTCGTCGTGTATCAAGCACTCCTG : 38201 vulgar: gi|861722426|gb|AKO89978.1| 148 296 . KQ414828.1 37450 38201 + 181 M 21 63 G 1 0 M 16 48 5 0 2 I 0 303 3 0 2 M 47 141 G 0 3 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 37451 38201 181 + . gene_id 6 ; sequence gi|861722426|gb|AKO89978.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 37451 37561 . + . KQ414828.1 exonerate:protein2genome:local exon 37451 37561 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 37562 37563 . + . intron_id 1 ; splice_site "GT" KQ414828.1 exonerate:protein2genome:local intron 37562 37868 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 37867 37868 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 37869 38201 . + . KQ414828.1 exonerate:protein2genome:local exon 37869 38201 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 37451 38201 181 + . alignment_id 6 ; Query gi|861722426|gb|AKO89978.1| ; Align 37451 149 63 ; Align 37514 171 48 ; Align 37869 187 141 ; Align 38013 234 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722426|gb|AKO89978.1| odorant receptor 14 [Microplitis mediator] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 177 Query range: 315 -> 411 Target range: 23604 -> 24205 316 : ValThrGlnLeuLeuLeuTyrSerTrpSerCysHisGluIleIleIleGluSerLeuGlu : 335 :!!!:!||||||! !:!!!:!!!!!::|||||| !! |||! !! !|||||||||.!. MetSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsn 23605 : ATGAGTCAACTATGGATGTTCACGTATAGTTGCGATTGCATAACAACAGAAAGCCTGAAC : 23662 336 : ValAlaGluAlaAlaTyrArgAlaTyrTrpTyrSerLeuSerTrpSerLysTyrGlyLys : 355 :!!||||||:!!!.!||| !!.! ||| !:!||| !! !..!|||!:!|||||| IleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLys 23663 : ATCGCTGAATCTGTGTACGCTGGACCATGGATAAATTTACCAATGGACAAATTTGGAAAA : 23722 356 : SerPheArgGlnAlaLeuLeuIleIleIleThrArgSerArgArgProCysValLeuThr : 375 !.!.|||:!!! !|||! !!!::!!||| !|||:!!|||||||||! !!.!|||||| LeuLeuArgLysGluLeuGlnMetLeuIleLeuArgAlaArgArgProSerAlaLeuThr 23723 : CTGCTAAGAAAAGAATTGCAAATGCTCATCTTGAGGGCGAGACGACCTTCCGCTTTGACT : 23782 376 : ValGlyLysPheValProMetSerLeuGluThrPheThrAlaValPhe{As} >>>> T : 392 !.! !! !||| !! !!!!:|||||||||||||||||| !||||||{||} AlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysValPhe{As}-+ 23783 : GCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTATTT{AA}at...... : 23837 393 : arget Intron 1 >>>> {n}SerAlaLeuSerTyrPheThrIleLeuArgGlnMet : 404 313 bp {|}!!!:!!:!!||||||||||||:!!|||!:!||| ++{n}ThrSerMetSerTyrPheThrLeuLeuLysGlnCys 23838 : ...................ag{T}ACATCAATGTCGTATTTCACATTATTAAAACAATGT : 24182 405 : ThrGluGluMetGluAsnSer : 411 ! !|||!!:! !! !|||||| IleGluAspThrValAsnSer 24183 : ATCGAGGACACGGTAAATTCG : 24205 vulgar: gi|861722426|gb|AKO89978.1| 315 411 . KQ414828.1 23604 24205 + 177 M 76 228 S 0 2 5 0 2 I 0 309 3 0 2 S 1 1 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 23605 24205 177 + . gene_id 7 ; sequence gi|861722426|gb|AKO89978.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 23605 23834 . + . KQ414828.1 exonerate:protein2genome:local exon 23605 23834 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local splice5 23835 23836 . + . intron_id 1 ; splice_site "AT" KQ414828.1 exonerate:protein2genome:local intron 23835 24147 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 24146 24147 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 24148 24205 . + . KQ414828.1 exonerate:protein2genome:local exon 24148 24205 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 23605 24205 177 + . alignment_id 7 ; Query gi|861722426|gb|AKO89978.1| ; Align 23605 316 228 ; Align 24149 393 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722426|gb|AKO89978.1| odorant receptor 14 [Microplitis mediator] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 170 Query range: 315 -> 391 Target range: 38535 -> 38763 316 : ValThrGlnLeuLeuLeuTyrSerTrpSerCysHisGluIleIleIleGluSerLeuGlu : 335 |||!:!||||||! !:!!!:!!!!!::|||||| !! |||! !! !|||||||||.!. ValSerGlnLeuTrpMetPheThrTyrSerCysAspCysIleThrThrGluSerLeuAsn 38536 : GTGAGTCAACTATGGATGTTCACGTACAGTTGCGATTGCATAACAACAGAAAGCCTGAAC : 38593 336 : ValAlaGluAlaAlaTyrArgAlaTyrTrpTyrSerLeuSerTrpSerLysTyrGlyLys : 355 :!!||||||:!!!.!||| !!.! ||| !:!||| !! ...|||:::|||||| IleAlaGluSerValTyrAlaGlyProTrpIleAsnLeuProMetAspLysPheGlyLys 38594 : ATCGCTGAATCTGTATACGCTGGACCATGGATAAATTTACCAATggataaatttggaaaa : 38653 356 : SerPheArgGlnAlaLeuLeuIleIleIleThrArgSerArgArgProCysValLeuThr : 375 .!.|||:!!! !|||! !:!::!!||| !|||:!!|||||||||! ! !|||||| LeuLeuArgLysAspLeuGlnValLeuIleLeuArgAlaArgArgProSerSerLeuThr 38654 : ctgCTAAGAAAAGATCTACAAGTGCTCATCTTGAGGGCGAGACGACCTTCCTCTTTGACT : 38713 376 : ValGlyLysPheValProMetSerLeuGluThrPheThrAlaValPhe : 391 !.! !! !||| !! !!!!:|||||||||||||||||| !|||||| AlaCysGlyPhePheSerIleSerLeuGluThrPheThrLysValPhe 38714 : GCCTGTGGATTCTTTTCTATATCTCTCGAAACCTTTACTAAGGTATTT : 38763 vulgar: gi|861722426|gb|AKO89978.1| 315 391 . KQ414828.1 38535 38763 + 170 M 76 228 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 38536 38763 170 + . gene_id 8 ; sequence gi|861722426|gb|AKO89978.1| ; gene_orientation . KQ414828.1 exonerate:protein2genome:local cds 38536 38763 . + . KQ414828.1 exonerate:protein2genome:local exon 38536 38763 . + . insertions 0 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 38536 38763 170 + . alignment_id 8 ; Query gi|861722426|gb|AKO89978.1| ; Align 38536 316 228 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722426|gb|AKO89978.1| odorant receptor 14 [Microplitis mediator] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 165 Query range: 148 -> 296 Target range: 22307 -> 23058 149 : IleIleGluSerTyrGlyLysAsnAlaSerGluArgThrLeuProTyrAsnLeuTrpPhe : 168 |||::: !:! !|||||||||! !|||!!:||| !! ! !|||:!!:!!|||.!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 22308 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 22365 169 : ThrPheIleProPheLysGluThrProTyrTyrGluIleCysPhePheLeuGlnSerAla : 188 ! :!!|||!!....! !|||||||||||||||||| ::!.!.:!!||| ! ! Asp---LeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeu 22366 : GAT---CTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTA : 22422 189 : AlaThrLeuThr{T} >>>> Target Intron 1 >>>> {hr}GlyValCysAla : 197 !!! !!!!:!!{!} 307 bp { !}.!!!.!||| ! ProIlePheSer{I}+- ++{le}SerAlaCysTyr 22423 : CCAATTTTCTCA{A}gg.........................ag{TT}AGCGCGTGTTAC : 22756 198 : ThrAlaPheAlaThrPheLeuPheThrIleAsnLeuTyrAlaThrGlyGlnPheLysIle : 217 !..!||| ......||| ::: |||:!!!.!.!!|||||||||:::||| LeuCysPheAspIleIlePhePheIleLeuCysLeuHisValAlaGlyGlnPheArgIle 22757 : CTTTGCtttgatatcatttttttcattttgtgtCTACACGTGGCTGGTCAGTTTCGTATA : 22816 218 : LeuGlnGlnArgLeuGluSerSerCysGlnValTyrAsnIleGluLys<->IleLysSer : 236 |||||| ! |||:!!! !:! !! :!! !.!.|||! !||| ! !:!!!:! LeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerSerGluAsn 22817 : CTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAAAGCAGTGAAAAT : 22876 237 : ValGluGlnIleAsnLeuIleAlaGluGluSerTyrAlaAsnLeuArgLysCysValGlu : 256 !... ! !.!.||| !:!!|||:!!!!!||| !!!.!!!!:!!!.|||:!!:!! ProSerThrAspGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGln 22877 : CCAAGCACAGATGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAA : 22936 257 : LeuHisAsnValLeuLeuLysTyrIleThrArgLeuGluAsnLeuTyrCysGlnIleMet : 276 ! !|||.!.!.!|||:!!:!!!:! !.!!! !||||||.!.:!!!:! !|||:!: GlnHisGlnAlaLeuIleGluPheCysAlaThrLeuGluGluValPheThrValIleVal 22937 : CAGCATCAGGCACTAATTGAATTTTGTGCAACACTCGAAGAGGTATTCACGGTAATCGTA : 22996 277 : LeuValGluThrLeuAlaCysValPheLeuIleCysThrThrGlyPheGlnIleValLeu : 296 |||! !:!!..!||| !! ! !.!.||||||||| !! !|||!:!|||:!!:!!||| LeuGlyGlnValLeuMetSerSerIleLeuIleCysPheIleGlyTyrGlnValLeuLeu 22997 : CTCGGACAAGTCCTAATGTCTAGCATATTAATTTGCTTCATCGGGTATCAAGTACTCCTG : 23056 vulgar: gi|861722426|gb|AKO89978.1| 148 296 . KQ414828.1 22307 23058 + 165 M 21 63 G 1 0 M 22 66 S 0 1 5 0 2 I 0 303 3 0 2 S 1 2 M 40 120 G 0 3 M 63 189 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 22308 23058 165 + . gene_id 9 ; sequence gi|861722426|gb|AKO89978.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 22308 22437 . + . KQ414828.1 exonerate:protein2genome:local exon 22308 22437 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 22438 22439 . + . intron_id 1 ; splice_site "GG" KQ414828.1 exonerate:protein2genome:local intron 22438 22744 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 22743 22744 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 22745 23058 . + . KQ414828.1 exonerate:protein2genome:local exon 22745 23058 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 22308 23058 165 + . alignment_id 9 ; Query gi|861722426|gb|AKO89978.1| ; Align 22308 149 63 ; Align 22371 171 66 ; Align 22747 194 120 ; Align 22870 234 189 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722426|gb|AKO89978.1| odorant receptor 14 [Microplitis mediator] Target: KQ414828.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold544, whole genome shotgun sequence Model: protein2genome:local Raw score: 158 Query range: 148 -> 296 Target range: 32386 -> 33137 149 : IleIleGluSerTyrGlyLysAsnAlaSerGluArgThrLeuProTyrAsnLeuTrpPhe : 168 |||::: !:! !|||||||||! !|||!!:||| !! ! !|||:!!:!!|||.!! IleLeuAlaAsnLeuGlyLysAsnGluSerAspArgGluHisIleTyrAspMetTrpLeu 32387 : attttagcaAATCTTGGAAAGAATGAATCTGATAGAGAACATATATACGATATGTGGCTC : 32444 169 : ThrPheIleProPheLysGluThrProTyrTyrGluIleCysPhePheLeuGlnSerAla : 188 ! :!!|||!!....! !|||||||||||||||||| ::!.!.:!!||| ! ! Asp---LeuProLeuSerValThrProTyrTyrGluIleThrTyrIleIleGlnValLeu 32445 : GAT---CTACCATTATCCGTAACAccatattatgaaattacttACATAATACAGGTATTA : 32501 189 : AlaThrLeuThrThrGly{V} >>>> Target Intron 1 >>>> {al}CysAla : 197 !!! !!!!:!!! ! {:} 307 bp {!!}||| ! ProIlePheSerArgGln{M}-+ ++{et}CysTyr 32502 : CCAATTTTCTCAAGGCaa{a}ct.........................ag{TG}TGTTAC : 32835 198 : ThrAlaPheAlaThrPheLeuPheThrIleAsnLeuTyrAlaThrGlyGlnPheLysIle : 217 !..!||| .........||| ::: !|||:!!!.!.!!|||||||||:::||| LeuCysPheAspAsnIlePhePheIleMetCysLeuHisValAlaGlyGlnPheArgIle 32836 : CTTTGCTttgataacatttttttcattatgtgTCTACACGTGGCTGGTCAGTTTCGTATA : 32895 218 : LeuGlnGlnArgLeuGluSerSerCysGlnValTyrAsnIleGluLysIleLys<->Ser : 236 |||||| ! |||:!!! !:! !! :!! !.!.|||! !|||! !!!. !:! LeuGlnTyrArgIleAlaAsnValSerGlyLeuSerGluIleValLysSerAsnAspAsn 32896 : CTACAATACAGAATTGCCAATGTGTCAGGTCTAAGCGAGATAGTGAAGAGCAATGATAAT : 32955 237 : ValGluGlnIleAsnLeuIleAlaGluGluSerTyrAlaAsnLeuArgLysCysValGlu : 256 ..!... ! !.!.||| !:!!|||:!!!!!||| !!!.!!!!:!!!.|||:!!:!! ThrSerThrAlaGluLeuTyrSerGluLysCysTyrIleLysPheLysAsnCysIleGln 32956 : ACAAGCACGGCTGAATTATACTCAGAGAAATGTTACATCAAGTTTAAGAATTGCATTCAA : 33015 257 : LeuHisAsnValLeuLeuLysTyrIleThrArgLeuGluAsnLeuTyrCysGlnIleMet : 276 ! !|||.!.!.!|||::::::::: ||||||.!.:!!!:! !|||:!: GlnHisGlnAlaLeuIleGluPheCysGluIleLeuGluGluValPheThrValIleVal 33016 : CAACATCAGGCACTaattgaattttgtgaaatactCGAAGAGGTATTCACGGTAATCGTA : 33075 277 : LeuValGluThrLeuAlaCysValPheLeuIleCysThrThrGlyPheGlnIleValLeu : 296 |||! !:!!..!||| !! ! !.!.:!!|||||| !.!!|||!:!:!!:!!:!!||| LeuGlyGlnValLeuMetPheSerIleIleIleCysPheAlaGlyTyrGluValLeuLeu 33076 : CTCGGACAAGTACTAATGTTTAGCATAATAATTTGCTTCGCCGGGTATGAAGTACTCCTG : 33135 vulgar: gi|861722426|gb|AKO89978.1| 148 296 . KQ414828.1 32386 33137 + 158 M 21 63 G 1 0 M 24 72 S 0 1 5 0 2 I 0 303 3 0 2 S 1 2 M 40 120 G 0 3 M 61 183 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414828.1 exonerate:protein2genome:local gene 32387 33137 158 + . gene_id 10 ; sequence gi|861722426|gb|AKO89978.1| ; gene_orientation + KQ414828.1 exonerate:protein2genome:local cds 32387 32522 . + . KQ414828.1 exonerate:protein2genome:local exon 32387 32522 . + . insertions 0 ; deletions 1 KQ414828.1 exonerate:protein2genome:local splice5 32523 32524 . + . intron_id 1 ; splice_site "ct" KQ414828.1 exonerate:protein2genome:local intron 32523 32829 . + . intron_id 1 KQ414828.1 exonerate:protein2genome:local splice3 32828 32829 . + . intron_id 0 ; splice_site "AG" KQ414828.1 exonerate:protein2genome:local cds 32830 33137 . + . KQ414828.1 exonerate:protein2genome:local exon 32830 33137 . + . insertions 3 ; deletions 0 KQ414828.1 exonerate:protein2genome:local similarity 32387 33137 158 + . alignment_id 10 ; Query gi|861722426|gb|AKO89978.1| ; Align 32387 149 63 ; Align 32450 171 72 ; Align 32832 196 120 ; Align 32955 236 183 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722426|gb|AKO89978.1| odorant receptor 14 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 343 -> 406 Target range: 1233387 -> 1233123 344 : TyrTrpTyrSerLeuSerTrpSerLysTyrGlyLysSerPheArgGlnAlaLeuLe : 362 ||| ! ||||||! !!!!|||! !||| ! !!.!|||!:!!:!!.!:!!! TyrArgTyrSerSerThrTrpTyrLysValProAlaLysPheGlnArgValIleTy 1233387 : TACAGATACTCTTCCACGTGGTATAAAGTACCGGCAAAATTTCAGCGAGTAATTTA : 1233333 363 : uIleIleIleThrArgSerArgArgProCysValLeuThrValGlyLysPheValP : 381 !! !!: !! !|||:!!! !!:!|||||||||||||||!.!||| !!!. ! rThrMetGlnIleArgAlaLeuLysProCysValLeuThrAlaGlyGlyLeuTyrG 1233332 : CACGATGCAAATAAGGGCTCTAAAGCCGTGTGTTTTGACTGCAGGTGGATTGTATG : 1233276 382 : roMetSerLeuGluThrPheThrAla >>>> Target Intron 1 >>>> V : 390 !|||!:!:!!|||!.!|||.!! ! 75 bp . luMetAsnMetGluAsnPheAlaAsn++ ++T 1233275 : AAATGAACATGGAGAACTTTGCAAACgt.........................aga : 1233174 391 : alPheAsnSerAlaLeuSerTyrPheThrIleLeuArgGlnMetThrGlu : 406 .!|||!!.!!!..!:!!||||||||||||!!:|||! !..!:!:! !||| hrPheLysThrCysMetSerTyrPheThrMetLeuMetSerLeuArgGlu 1233173 : CATTCAAAACGTGCATGTCATACTTCACAATGCTGATGTCACTTAGAGAA : 1233124 vulgar: gi|861722426|gb|AKO89978.1| 343 406 . KQ414851.1 1233387 1233123 - 108 M 46 138 5 0 2 I 0 71 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1233124 1233387 108 - . gene_id 1 ; sequence gi|861722426|gb|AKO89978.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1233250 1233387 . - . KQ414851.1 exonerate:protein2genome:local exon 1233250 1233387 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1233248 1233249 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1233175 1233249 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1233175 1233176 . - . intron_id 0 ; splice_site "ag" KQ414851.1 exonerate:protein2genome:local cds 1233124 1233174 . - . KQ414851.1 exonerate:protein2genome:local exon 1233124 1233174 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1233124 1233387 108 - . alignment_id 1 ; Query gi|861722426|gb|AKO89978.1| ; Align 1233388 344 138 ; Align 1233175 390 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722426|gb|AKO89978.1| odorant receptor 14 [Microplitis mediator] Target: KQ414851.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold440, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 108 Query range: 343 -> 406 Target range: 1228551 -> 1228287 344 : TyrTrpTyrSerLeuSerTrpSerLysTyrGlyLysSerPheArgGlnAlaLeuLe : 362 ||| ! ||||||! !!!!|||! !||| ..! !!.!|||!:!!:!!.!:!!! TyrArgTyrSerSerThrTrpTyrLysValSerAlaLysPheGlnArgValIleTy 1228551 : TACAGATACTCTTCCACGTGGTATAAGGTATCGGCAAAATTTCAACGAGTAATTTA : 1228497 363 : uIleIleIleThrArgSerArgArgProCysValLeuThrValGlyLysPheValP : 381 !!!:!!: !! !|||:!!! !!:!||||||:!!||||||!.!||| !!!. ! rMetMetGlnIleArgAlaLeuLysProCysIleLeuThrAlaGlyGlyLeuTyrG 1228496 : CATGATGCAAATAAGGGCTCTAAAGCCGTGTATTTTGACTGCAGGTGGATTGTACG : 1228440 382 : roMetSerLeuGluThrPheThrAla >>>> Target Intron 1 >>>> V : 390 !|||!:!:!!|||!.!|||.!! ! 75 bp . luMetAsnMetGluAsnPheAlaAsn++ ++T 1228439 : AAATGAACATGGAGAACTTTGCAAACgt.........................agA : 1228338 391 : alPheAsnSerAlaLeuSerTyrPheThrIleLeuArgGlnMetThrGlu : 406 .!|||!!.!!!..!:!!||||||||||||!!:|||! !..!.!.! !||| hrPheLysThrCysMetSerTyrPheThrMetLeuMetSerPheArgGlu 1228337 : CATTCAAAACGTGCATGTCGTACTTCACAATGCTGATGTCATTTAGGGAA : 1228288 vulgar: gi|861722426|gb|AKO89978.1| 343 406 . KQ414851.1 1228551 1228287 - 108 M 46 138 5 0 2 I 0 71 3 0 2 M 17 51 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414851.1 exonerate:protein2genome:local gene 1228288 1228551 108 - . gene_id 2 ; sequence gi|861722426|gb|AKO89978.1| ; gene_orientation + KQ414851.1 exonerate:protein2genome:local cds 1228414 1228551 . - . KQ414851.1 exonerate:protein2genome:local exon 1228414 1228551 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local splice5 1228412 1228413 . - . intron_id 1 ; splice_site "GT" KQ414851.1 exonerate:protein2genome:local intron 1228339 1228413 . - . intron_id 1 KQ414851.1 exonerate:protein2genome:local splice3 1228339 1228340 . - . intron_id 0 ; splice_site "AG" KQ414851.1 exonerate:protein2genome:local cds 1228288 1228338 . - . KQ414851.1 exonerate:protein2genome:local exon 1228288 1228338 . - . insertions 0 ; deletions 0 KQ414851.1 exonerate:protein2genome:local similarity 1228288 1228551 108 - . alignment_id 2 ; Query gi|861722426|gb|AKO89978.1| ; Align 1228552 344 138 ; Align 1228339 390 51 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722432|gb|AKO89980.1| odorant receptor 16 [Microplitis mediator] Target: LHQN01020543.1 Habropoda laboriosa contig20543, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 241 Query range: 102 -> 238 Target range: 4456 -> 4048 103 : LeuGlnGlnLeuGlySerAlaLeuAspGluPheIleLysLysAlaAsnGluSerGluLysVa : 123 ||||||:!!||| !..!! !:!! ! ! ! !:!!! !|||!!. !! !|||!:!! LeuGlnLysLeuIleGluGluMetLysIleCysCysGluThrAlaLysProTyrGluArgAs 4456 : TTGCAGAAACTAATCGAAGAAATGAAGATTTGTTGTGAAACAGCAAAACCATACGAAAGAGA : 4396 124 : lIleLeuGlnArgTyrValAspAsnThrTrpLysPheHisGlyPheMetThrCysSerTyrT : 144 !:!!!!!||||||||||||:!!!!. |||::: :!!! !!!!:!| pValPheGlnArgTyrValAsnLysHisSerLeuPheTyrIleThrCysSerSerTrpPheT 4395 : CGTCTTCCAACGATACGTCAATAAGCActctttattttatataacatGTTCGTCATGGTTTT : 4333 145 : yrLeuThrAlaThrAlaValLeuLeuGlyProLeuIleLeuProGlnLysPheProThrAsp : 164 |||||||||||! ! !:!!:!!|||||| !|||:!!:!! !!.!. |||||||||:!! yrLeuThrAlaIleIleMetValLeuGlySerLeuLeuIleSerAspProPheProThrAsn 4332 : ACTTAACAGCAATAATTATGGTTCTTGGAAGTCTGCTTATATCCGATCCTTTTCCAACCAAC : 4273 165 : AlaValTyrProPheProValAspAsnGlnIleIleSerTyrIleValTyrLeuHisGlnCy : 185 |||||||||||||||||||||:!! !:!! !:!:!!! !|||:!!!:!:!!||||||! AlaValTyrProPheProValAsnPheGluProLeuArgSerIleIlePheMetHisGlnSe 4272 : GCAGTATATCCATTCCCTGTTAACTTTGAACCCTTGAGAAGCATCATTTTTATGCACCAATC : 4210 186 : sIleValGlyTyrGlnCysSerAlaGlyMetAlaLeuAspCysGlnAlaAlaLeuPheLeuT : 206 .!!|||||| ||||||:!!||| ! ::!:!!:!! ! :!!||||||!!.||| rPheValGlyIleGlnCysAlaAlaHisAlaSerMetAsnValLeuSerAlaLeuLeuLeuL 4209 : GTTCGTTGGCATACAGTGTGCTGCACACGCTAGTATGAATGTGCTTTCTGCACTGTTATTGC : 4147 207 : rpTyrLeuSerAlaArgPheGluIleLeuIleSerGluAlaLysAsnValGluThrPheAsp : 226 !:! !!!!||||||||||||||||||:!:!!!||| !!:!||||||.!. !.!!!!: euPheThrThrAlaArgPheGluIleLeuMetThrGluLeuArgAsnValAsnAspIleGlu 4146 : TATTCACTACAGCtcgtttcgaaatattgaTGACGGAGTTGAGGAATGTCAATGATATCGAA : 4087 227 : GluLeuArgAsnTyrIleLysLysHisGlnIleIle : 238 !|||! !!!. !!!:||||||:!!..!! !:!: ThrLeuIleLysSerMetLysLysTyrSerThrVal 4086 : ACACTGATTAAGAGTATGAAAAAGTATTCGACTGTG : 4049 vulgar: gi|861722432|gb|AKO89980.1| 102 238 . LHQN01020543.1 4456 4048 - 241 M 136 408 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # LHQN01020543.1 exonerate:protein2genome:local gene 4049 4456 241 - . gene_id 1 ; sequence gi|861722432|gb|AKO89980.1| ; gene_orientation . LHQN01020543.1 exonerate:protein2genome:local cds 4049 4456 . - . LHQN01020543.1 exonerate:protein2genome:local exon 4049 4456 . - . insertions 0 ; deletions 0 LHQN01020543.1 exonerate:protein2genome:local similarity 4049 4456 241 - . alignment_id 1 ; Query gi|861722432|gb|AKO89980.1| ; Align 4457 103 408 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722426|gb|AKO89978.1| odorant receptor 14 [Microplitis mediator] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 345 Query range: 150 -> 408 Target range: 1706998 -> 1709252 151 : GluSerTyrGlyLysAsnAlaSerGluArgThrLeuProTyrAsnLeuTrpPheTh : 169 |||||| ||||||||| |||:!:|||! !||| ! !|||!!!|||.!! GluSerIleGlyLysAsnGluSerAspArgIleLeuIleValAsnPheTrpIleAs 1706999 : GAAAgtattggaaaaaatgaatcagACAGGATACTTATAGTCAACTTCTGGATTGA : 1707053 170 : rPheIleProPheLysGluThrProTyrTyrGluIleCysPhePheLeuGln >> : 187 !||| ||| ! !||||||||||||||||||! ||| ! !||| pPhe---ProThrThrMetThrProTyrTyrGluIleLeuPheThrSerGln++ 1707054 : CTTT---CCGACAACCATGACACCATACTATGAGATATTATTTACGTCGCAGgt.. : 1707106 188 : >> Target Intron 1 >>>> SerAlaAlaThrLeuThrThrGlyValCysA : 197 276 bp ! ! !..!:!! !..! !!:!! !! ++ValPheIleValMetTyrValCysIleSerT 1707107 : .......................agGTTTTTATCGTAATGTACGTTTGCATAAGCT : 1707410 198 : laThrAlaPheAlaThrPheLeuPheThrIleAsnLeuTyrAlaThrGlyGlnPhe : 215 ! !..!.!!! !!.!||||||! !! !|||||||||:!!.!!.!! !|||||| yrLeuCysIleAspAsnPheLeuCysMetIleAsnLeuHisThrAlaThrGlnPhe 1707411 : ACCTTTGTATCGACAATTTTCTGTGCATGATCAATCTACACACAGCTACTCAATTT : 1707464 216 : LysIleLeuGlnGlnArgLeuGluSerSerCysGlnValTyrAsnIleGluLysIl : 234 ::!||||||||| ! ||||||..!!:! !||| !.! ||| !...!.. ArgIleLeuGlnTyrArgLeuSerAsnValCysGlyAla---AsnGluArgSerAs 1707465 : CGAATATTGCAATACAGACTGTCGAATGTGTGCGGTGCA---AACGAACGTAgcga : 1707518 235 : eLysSerValGluGlnIleAsnLeuIleAlaGluGluSerTyrAlaAsnLeuArgL : 253 ||| :::::: ! !! !:!!!!:|||!!!||||||!!.!!!!:!! pLysIleSerLysLysThrProSerAsnSerAspGluCysTyrAlaLysPheLysA 1707519 : taaaatttcgaaaaaaacaCCGTCCAATTCGGACGAATGCTACGCTAAGTTCAAAA : 1707575 254 : ysCysValGluLeuHisAsnValLeuLeuLysTyrIleThrArgLeuGluAsnLeu : 271 !.|||:!!:!!! !|||.!.!.!|||:!!:!!||| !!.!..!|||:!!.!.:!! snCysIleGlnGlnHisGlnAlaLeuIleGluTyrCysAsnGluLeuGlnGluVal 1707576 : ATTGCATTCAACAGCATCAAGCACTCATAGAATACTGTAACGAACTTCAAGAGGTG : 1707629 272 : TyrCysGlnIleMetLeuValGluThrLeuAlaCysValPheLeuIleCysThrTh : 290 !:! !! !.!!:!!|||!.!:!!..!||| !! ! !!!.|||!!:||| ! PheGlyLeuPheValLeuAlaGlnValLeuLeuPheSerLeuLeuMetCysLeuAs 1707630 : TTCGGTTTATTTGTGCTTGCACAAGTGTTGCTCTTCAGTTTGTTAATGTGCCTCGA : 1707686 291 : rGlyPheGlnIleValLeu{G} >>>> Target Intron 2 >>>> {ly}V : 298 !|||!:! !:!::!!:!!{ } 451 bp { !}! pGlyTyrLeuValMetVal{L}++ +-{ys}G 1707687 : TGGATATTTGGTGATGGTT{A}gt.........................ac{AG}G : 1708161 299 : alAspSerSerIleLeuArgThrSerArgSerAlaLeuTyrPheCysCysLeuVal : 316 !|||!!! !!|||:!!!:! ! !! !! ! !!!!:!!.!. ! ! !:!! luAspThrProIleMetGlnArgLeuThrPheLeuPheHisLeuThrGlyCysLeu 1708162 : AAGATACTCCCATTATGCAGCGCCTTACTTTCTTGTTTCACCTAACGGGATGCCTG : 1708215 317 : ThrGlnLeuLeuLeuTyrSerTrpSerCysHisGluIleIleIleGluSerLeuGl : 335 !|||||||||:!!!:!!!!!::|||||| !! :!:||| !|||||||||.! CysGlnLeuLeuMetPheThrTyrSerCysAspCysLeuIleArgGluSerLeuAs 1708216 : TGCCAACTGTTGATGTTCACCTACAGCTGCGATTGCCTGATACGAGAAAGCTTGAA : 1708272 336 : uValAlaGluAlaAlaTyrArgAlaTyrTrpTyrSerLeuSerTrpSerLysTyrG : 354 .||||||.!.||| !||| !..!! ||| ! !||| !! !..!!:!! !| nValAlaAsnAlaIleTyrAspCysSerTrpIleHisLeuProMetAspArgSerG 1708273 : CGTGGCCAATGCTATATACGACTGCTCGTGGATTCACTTGCCAATGGACAGATCTG : 1708329 355 : lyLysSerPheArgGlnAlaLeuLeuIleIleIleThrArgSerArgArgProCys : 372 ||::!! !.!.|||:!!! !||| !.!!:!!||| !||||||||| !|||||| lyArgMetLeuArgLysAspLeuThrPheValIleGlyArgSerArgValProCys 1708330 : GGCGAATGCTGCGAAAAGATTTGACATTCGTCATTGGAAGATCTAGAGTACCTTGC : 1708383 373 : ValLeuThrValGlyLysPheValProMetSerLeuGluThrPheThrAla >>> : 390 !||||||!.! !! !||| !!|||:!!||||||||||||!:!|||:!! CysLeuThrAlaCysGlyPhePheProValSerLeuGluThrTyrThrSer++ 1708384 : TGTCTCACTGCTTGTGGATTCTTCCCTGTGTCACTGGAAACGTACACTTCGgt... : 1708439 391 : > Target Intron 3 >>>> ValPheAsnSerAlaLeuSerTyrPheThrIl : 400 759 bp :!!!!.!:!!!!||| !||||||||||||:! ++IleLeuSerThrAlaAlaSerTyrPheThrLe 1708440 : ......................agATTTTAAGTACCGCAGCGTCATACTTCACACT : 1709226 401 : eLeuArgGlnMetThrGluGluMet : 408 :||||||:!!... !! !|||!!: uLeuArgLysGlnGluAlaGluIle 1709227 : GCTACGAAAACAAGAAGCAGAAATA : 1709252 vulgar: gi|861722426|gb|AKO89978.1| 150 408 . KQ414915.1 1706998 1709252 + 345 M 20 60 G 1 0 M 15 45 5 0 2 I 0 272 3 0 2 M 42 126 G 1 0 M 67 201 S 0 1 5 0 2 I 0 447 3 0 2 S 1 2 M 92 276 5 0 2 I 0 755 3 0 2 M 19 57 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1706999 1709252 345 + . gene_id 1 ; sequence gi|861722426|gb|AKO89978.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1706999 1707103 . + . KQ414915.1 exonerate:protein2genome:local exon 1706999 1707103 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1707104 1707105 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707104 1707379 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1707378 1707379 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1707380 1707707 . + . KQ414915.1 exonerate:protein2genome:local exon 1707380 1707707 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1707708 1707709 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1707708 1708158 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1708157 1708158 . + . intron_id 1 ; splice_site "AC" KQ414915.1 exonerate:protein2genome:local cds 1708159 1708436 . + . KQ414915.1 exonerate:protein2genome:local exon 1708159 1708436 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1708437 1708438 . + . intron_id 3 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1708437 1709195 . + . intron_id 3 KQ414915.1 exonerate:protein2genome:local splice3 1709194 1709195 . + . intron_id 2 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1709196 1709252 . + . KQ414915.1 exonerate:protein2genome:local exon 1709196 1709252 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1706999 1709252 345 + . alignment_id 1 ; Query gi|861722426|gb|AKO89978.1| ; Align 1706999 151 60 ; Align 1707059 172 45 ; Align 1707380 187 126 ; Align 1707506 230 201 ; Align 1708161 298 276 ; Align 1709196 390 57 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722426|gb|AKO89978.1| odorant receptor 14 [Microplitis mediator] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 316 Query range: 182 -> 405 Target range: 1694854 -> 1696260 183 : PhePheLeuGlnSerAlaAlaThrLeuThrThrGlyValCysAlaThrAlaPheAl : 201 .!.|||||||||!!! !..!..!! ! !..!|||:!!||| !! !..!|||! LeuPheLeuGlnThrLeuCysValTyrHisValGlyIleCysTyrMetCysPheAs 1694855 : CTATTTCTGCAGACACTTTGCGTGTACCATGTCGGTATATGTTACATGTGCTTCGA : 1694909 202 : aThrPheLeuPheThrIleAsnLeuTyrAlaThrGlyGlnPheLysIleLeuGlnG : 220 !!.!.!!||| ! !:!:||||||:!!!.!.!! !||||||:::||||||||| pAsnIleLeuSerLeuLeuAsnLeuHisValAlaThrGlnPheArgIleLeuGlnT 1694910 : CAACATCCTCAGCCTTCTGAATCTTCACGTGGCCACTCAATTTCGTATCCTTCAAT : 1694966 221 : lnArgLeuGluSerSerCysGlnValTyrAsnIleGluLysIleLysSerValGlu : 238 ! |||!!! !!:!! ! !!.!.||| !.!.! :!!! ! ! yrArgPheMetAsnLeuSerAsnValIleGluLysGlnThrAspGlyArgGluLeu 1694967 : ACCGATTCATGAATTTGAGTAATGTAATTGAGAAGCAAACAGACGGTcgagaattg : 1695020 239 : GlnIleAsnLeu<-><->IleAlaGluGluSerTyrAlaAsnLeuArgLysCysVa : 255 :::|||...! ! .!!.!!! !!:|||||| !.!.|||!:!!..||||| GluIleGlyTyrThrAsnPheThrValAspSerTyrLeuGlnLeuLysSerCysVa 1695021 : gaaattggtTACACAAATTTCACAGTCGATAGTTACTTACAATTGAAGAGTTGCGT : 1695077 256 : lGluLeuHisAsnValLeuLeuLysTyrIleThrArgLeuGluAsnLeuTyrCysG : 274 |:!!! !|||.!.!.!||| ! ||| !! !!:!|||||||||:!!!:!! lGlnTyrHisGlnAlaLeuThrGlyTyrCysLysLysLeuGluAsnIlePheSerL 1695078 : GCAATACCATCAGGCACTTACAGGCTATTGCAAAAAGTTGGAGAACATATTTTCGT : 1695134 275 : lnIleMetLeuValGluThrLeuAlaCysValPheLeuIleCysThrThrGlyPhe : 292 !:!!:!!|||! !:!!..!||| ! !.!.!.:!!:!!||| !..!|||!:! euLeuValLeuGlyGlnValLeuPheLeuAlaMetValLeuCysLeuValGlyTyr 1695135 : TGCTTGTGCTTGGACAAGTGCTTTTCCTAGCCATGGTACTTTGCCTCGTGGGATAT : 1695188 293 : GlnIleValLeuGly >>>> Target Intron 1 >>>> ValAspSerSer : 301 |||:!! !!||| 415 bp ..!|||||| !! GlnLeuPheLeu---++ ++ThrAspSerPro 1695189 : CAGCTATTTCTG---gt.........................agACAGACTCACCA : 1695627 302 : IleLeuArgThrSerArgSerAlaLeuTyrPheCysCysLeuValThrGlnLeuLe : 320 !! !|||!.! ! !!! !!.!||| !!.!.... !! !:!! !||||||!! ProSerArgAsnValGlyLeuValLeuAsnLeuAlaGlyThrLeuCysGlnLeuPh 1695628 : CCTTCGAGAAACGTCGGATTGGTACTCAACCTGGCAGGCACTTTGTGTCAACTTTT : 1695684 321 : uLeuTyrSerTrpSerCysHisGluIleIleIleGluSerLeuGluValAlaGluA : 339 !:!!!:!!!!!::|||||| !!! :!:! !! !||||||:!!!!:|||::!..!| eMetPheThrTyrSerCysAspGlyLeuThrArgGluSerMetAspValSerArgA 1695685 : TATGTTCACGTACAGTTGCGATGGTTTGACAAGAGAGAGCATGGACGTTAGCAGAG : 1695741 340 : laAlaTyrArgAlaTyrTrpTyrSerLeuSerTrpSerLysTyrGlyLysSerPhe : 357 ||!.!!:! ! ! ||| !:!||| !! !..!!:! !!||||||||| ! laValPheAlaArgProTrpAlaAsnLeuProMetAspArgAsnGlyLysSerVal 1695742 : CTGTATTTGCAAGACCGTGGGCAAATCTGCCAATGGATAGAAATGGGAAAAGTGTG : 1695795 358 : ArgGlnAlaLeuLeuIleIleIleThrArgSerArgArgProCysValLeuThrVa : 376 ||||||::!:!!|||!!::!:|||! !||||||!.!||| !||| !||||||!. ArgGlnSerMetLeuMetValIleMetArgSerAsnArgCysCysCysLeuThrAl 1695796 : CGACAAAGCATGCTAATGGTGATCATGAGGTCGAACAGGTGTTGCTGCTTAACAGC : 1695852 377 : lGlyLysPheValProMetSerLeuGluThrPheThrAla >>>> Target In : 390 !.!! !||| !!|||:!:||||||||||||!:!|||!.! 319 aSerGlyPhePheProValSerLeuGluThrTyrThrGly++ 1695853 : CAGCGGGTTCTTTCCAGTTTCTCTCGAGACTTACACTGGGgt.............. : 1695896 391 : tron 2 >>>> ValPheAsnSerAlaLeuSerTyrPheThrIleLeuArgGlnM : 404 bp |||.!!!:!!!!|||:!!||||||||||||:!!||||||||| ++ValLeuSerThrAlaMetSerTyrPheThrLeuLeuArgGlnS 1695897 : ...........agGTCCTCAGCACTGCAATGTCATACTTTACACTACTGAGACAAT : 1696255 405 : etThr : 405 !||| erThr 1696256 : CGACT : 1696260 vulgar: gi|861722426|gb|AKO89978.1| 182 405 . KQ414915.1 1694854 1696260 + 316 M 60 180 G 0 6 M 54 162 G 1 0 5 0 2 I 0 411 3 0 2 M 92 276 5 0 2 I 0 315 3 0 2 M 16 48 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1694855 1696260 316 + . gene_id 2 ; sequence gi|861722426|gb|AKO89978.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1694855 1695202 . + . KQ414915.1 exonerate:protein2genome:local exon 1694855 1695202 . + . insertions 6 ; deletions 1 KQ414915.1 exonerate:protein2genome:local splice5 1695203 1695204 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695203 1695617 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1695616 1695617 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1695618 1695893 . + . KQ414915.1 exonerate:protein2genome:local exon 1695618 1695893 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1695894 1695895 . + . intron_id 2 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1695894 1696212 . + . intron_id 2 KQ414915.1 exonerate:protein2genome:local splice3 1696211 1696212 . + . intron_id 1 ; splice_site "ag" KQ414915.1 exonerate:protein2genome:local cds 1696213 1696260 . + . KQ414915.1 exonerate:protein2genome:local exon 1696213 1696260 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1694855 1696260 316 + . alignment_id 2 ; Query gi|861722426|gb|AKO89978.1| ; Align 1694855 183 180 ; Align 1695041 243 162 ; Align 1695618 298 276 ; Align 1696213 390 48 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722426|gb|AKO89978.1| odorant receptor 14 [Microplitis mediator] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 168 Query range: 315 -> 393 Target range: 1712423 -> 1712657 316 : ValThrGlnLeuLeuLeuTyrSerTrpSerCysHisGluIleIleIleGluSerLe : 334 :!! !|||||||||:!!!:!!!!!::|||||| !! ||||||! |||||||| MetCysGlnLeuLeuMetPheThrTyrSerCysAspCysIleIleThrGluSerLe 1712424 : ATGTGTCAATTGCTGATGTTTACGTACAGCTGCGATTGTATAATAACGGAAAGTTT : 1712478 335 : uGluValAlaGluAlaAlaTyrArgAlaTyrTrpTyrSerLeuSerTrpSerLysT : 353 |.!.|||.!!||||||!.!||| !!.! ||| !!||| !! !|||! ! uAsnValThrGluAlaValTyrAspGlyProTrpProArgLeuProMetSerThrA 1712479 : GAACGTGACGGAAGCGGTGTACGATGGACCATGGCCACGTTTGCCAATGAGCACGA : 1712535 354 : yrGlyLysSerPheArgGlnAlaLeuLeuIleIleIleThrArgSerArgArgPro : 371 |||!:!! !.!.|||:!!! !|||:!!:!!:!!|||! !||||||||| !||| rgGlyArgMetIleArgLysAspLeuIleLeuValIleIleArgSerArgValPro 1712536 : GAGGAAGAATGATAAGGAAGGATTTGATACTCGTTATCATAAGATCGAGAGTACCT : 1712589 372 : CysValLeuThrValGlyLysPheValProMetSerLeuGluThrPheThrAlaVa : 390 ||| !||||||!.! !! !||| !! !!!:||||||||||||!:!||| !|| CysCysLeuThrAlaArgGlyPhePheValIleSerLeuGluThrTyrThrLysVa 1712590 : TGTTGCTTGACCGCCAGAGGATTCTTCGTAATATCTTTGGAAACGTATACGAAGGT : 1712646 391 : lPheAsnSer : 393 |.!!:!!||| lIleAspSer 1712647 : AATTGACTCT : 1712657 vulgar: gi|861722426|gb|AKO89978.1| 315 393 . KQ414915.1 1712423 1712657 + 168 M 78 234 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1712424 1712657 168 + . gene_id 3 ; sequence gi|861722426|gb|AKO89978.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1712424 1712657 . + . KQ414915.1 exonerate:protein2genome:local exon 1712424 1712657 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1712424 1712657 168 + . alignment_id 3 ; Query gi|861722426|gb|AKO89978.1| ; Align 1712424 316 234 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722426|gb|AKO89978.1| odorant receptor 14 [Microplitis mediator] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 160 Query range: 315 -> 396 Target range: 1703013 -> 1703256 316 : ValThrGlnLeuLeuLeuTyrSerTrpSerCysHisGluIleIleIleGluSerLe : 334 :!! !||||||||||||!:!!!!!::|||||| !!! :!:||| |||||| LeuCysGlnLeuLeuLeuPheThrTyrSerCysAspGlyLeuIleGluGluSerTh 1703014 : CTATGCCAACTATTGCTATTTACCTATAGCTGCGACGGTCTGATAGAGGAAAGTAC : 1703068 335 : uGluValAlaGluAlaAlaTyrArgAlaTyrTrpTyrSerLeuSerTrpSerLysT : 353 !.!.:!!!.! ||| !|||! !!.! !||| !||| !! !..!||| rAsnIleGlyThrAlaIleTyrLeuGlyProTrpIleHisLeuProMetAspLysA 1703069 : GAACATCGGGACTGCGATATACCTCGGGCCTTGGATACATCTGCCAATGGACAAAG : 1703125 354 : yrGlyLysSerPheArgGlnAlaLeuLeuIleIleIleThrArgSerArgArgPro : 371 !|||!:!!!!!!.|||::!! !||| !!!::!!|||..!|||||||||!:! !! laGlyArgArgLeuArgArgAspLeuThrMetValIleValArgSerArgLysSer 1703126 : CCGGCAGAAGGTTGAGAAGAGACTTGACAATGGTCATCGTAAGATCGAGAAAATCG : 1703179 372 : CysValLeuThrValGlyLysPheValProMetSerLeuGluThrPheThrAlaVa : 390 !! !||||||!.!.!! !||| !!|||:!:||||||||||||! !|||.!!|| SerCysLeuThrAlaSerGlyPhePheProValSerLeuGluThrCysThrThrVa 1703180 : AGCTGTTTAACTGCCAGCGGATTCTTTCCTGTTTCGCTGGAAACTTGTACCACGGT : 1703236 391 : lPheAsnSerAlaLeuSer : 396 |||||||! !:!!!!!||| lPheAsnPheSerPheSer 1703237 : ATTCAATTTCTCATTCTCT : 1703256 vulgar: gi|861722426|gb|AKO89978.1| 315 396 . KQ414915.1 1703013 1703256 + 160 M 81 243 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1703014 1703256 160 + . gene_id 4 ; sequence gi|861722426|gb|AKO89978.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1703014 1703256 . + . KQ414915.1 exonerate:protein2genome:local exon 1703014 1703256 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1703014 1703256 160 + . alignment_id 4 ; Query gi|861722426|gb|AKO89978.1| ; Align 1703014 316 243 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722426|gb|AKO89978.1| odorant receptor 14 [Microplitis mediator] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 146 Query range: 150 -> 224 Target range: 1681722 -> 1682064 151 : GluSerTyrGlyLysAsnAlaSerGluArgThrLeuProTyrAsnLeuTrpPheTh : 169 |||!:! !||||||!:!! !..!||||||! !||||||!:! !!! ! ! GluAsnIleGlyLysSerAspGluGluArgIleLeuProPheProPheArgValPh 1681723 : gaGAACATCGGGAAAAGTGACGAAGAGAGAATTCTCCCGTTTCCATTCAGAGTGTT : 1681777 170 : rPheIleProPheLysGluThrProTyrTyrGluIleCysPhePheLeuGln >> : 187 ! !:!:||| ... !|||||||||||||||||| ||| ! :!!:!! eAsnLeuProThrSerLeuThrProTyrTyrGluIleLeuPheValIleGlu++ 1681778 : TAACTTGCCTACGTCTTTGACGCCgtattatgaaatattgttcGTGATAGAGgt.. : 1681833 188 : >> Target Intron 1 >>>> SerAlaAlaThrLeuThrThrGlyValCysA : 197 120 bp !!! !:!!..!:!! !:!!|||:!!||| ++ThrLeuSerValValHisSerGlyIleCysP 1681834 : .......................agACATTATCTGTGGTGCATTCGGGAATTTGTT : 1681981 198 : laThrAlaPheAlaThrPheLeuPheThrIleAsnLeuTyrAlaThrGlyGlnPhe : 215 ! !..!|||! !!.!||||||! !! !:!:!:!:!!:!!!.! !||||||||| heCysCysPheAspAsnPheLeuCysIleLeuSerMetHisValGlyGlyGlnPhe 1681982 : TCTGTTGTTTCGACAATTTCCTGTGTATACTGAGCATGCACGTCGGTGGACAGTTT : 1682035 216 : LysIleLeuGlnGlnArgLeuGluSer : 224 ||||||||||||.!.!:!|||:!!!!! LysIleLeuGlnAsnLysLeuGlnThr 1682036 : AAGATTTTACAAAACAAACTCCAAACA : 1682064 vulgar: gi|861722426|gb|AKO89978.1| 150 224 . KQ414915.1 1681722 1682064 + 146 M 36 108 5 0 2 I 0 116 3 0 2 M 38 114 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1681723 1682064 146 + . gene_id 5 ; sequence gi|861722426|gb|AKO89978.1| ; gene_orientation + KQ414915.1 exonerate:protein2genome:local cds 1681723 1681830 . + . KQ414915.1 exonerate:protein2genome:local exon 1681723 1681830 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local splice5 1681831 1681832 . + . intron_id 1 ; splice_site "GT" KQ414915.1 exonerate:protein2genome:local intron 1681831 1681950 . + . intron_id 1 KQ414915.1 exonerate:protein2genome:local splice3 1681949 1681950 . + . intron_id 0 ; splice_site "AG" KQ414915.1 exonerate:protein2genome:local cds 1681951 1682064 . + . KQ414915.1 exonerate:protein2genome:local exon 1681951 1682064 . + . insertions 0 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1681723 1682064 146 + . alignment_id 5 ; Query gi|861722426|gb|AKO89978.1| ; Align 1681723 151 108 ; Align 1681951 187 114 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722426|gb|AKO89978.1| odorant receptor 14 [Microplitis mediator] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 183 -> 296 Target range: 1699626 -> 1699971 184 : PheLeuGlnSerAlaAlaThrLeuThrThrGlyValCysAlaThrAlaPheAlaTh : 202 ||| !||| ! !:!! !! ! !..!||||||||| !! !..!|||! !!. PheAlaGlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAs 1699627 : TTTGCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAA : 1699681 203 : rPheLeuPheThrIleAsnLeuTyrAlaThrGlyGlnPheLysIleLeuGlnGlnA : 221 !.!!|||! ! !!!:||||||:!!|||.!! !||||||:::||||||||| ! | nLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrA 1699682 : CCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACA : 1699738 222 : rgLeuGluSer<-><->SerCysGlnValTyrAsnIleGluLysIleLysSerVal : 237 |||||..!!:! ..! .!. ! ! .!.:!!!!: ! ! !:!!||| ! rgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSer 1699739 : GGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGC : 1699792 238 : GluGlnIleAsnLeuIleAlaGluGluSerTyrAlaAsnLeuArgLysCysValGl : 256 ! ! :!:::!! !.!!||||||.!.!!!||| ! !!!!:!!!.||||||.. AlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValAr 1699793 : GCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACG : 1699849 257 : uLeuHisAsnValLeuLeuLysTyrIleThrArgLeuGluAsnLeuTyrCysGlnI : 275 !! !|||.!. !! !:!!! !||| ! !||||||.!..!.:!!!:! | gGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValI 1699850 : ACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCA : 1699906 276 : leMetLeuValGluThrLeuAlaCysValPheLeuIleCysThrThrGlyPheGln : 293 ||:!:|||! !.!.! !|||!.!! ! !.!!||||||||| !..!||||||||| leValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGln 1699907 : TTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAA : 1699960 294 : IleValLeu : 296 :!::!!:!! ValLeuVal 1699961 : GTGCTCGTA : 1699971 vulgar: gi|861722426|gb|AKO89978.1| 183 296 . KQ414915.1 1699626 1699971 + 132 M 41 123 G 0 6 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1699627 1699971 132 + . gene_id 6 ; sequence gi|861722426|gb|AKO89978.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1699627 1699971 . + . KQ414915.1 exonerate:protein2genome:local exon 1699627 1699971 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1699627 1699971 132 + . alignment_id 6 ; Query gi|861722426|gb|AKO89978.1| ; Align 1699627 184 123 ; Align 1699756 225 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722426|gb|AKO89978.1| odorant receptor 14 [Microplitis mediator] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 132 Query range: 183 -> 296 Target range: 1702007 -> 1702352 184 : PheLeuGlnSerAlaAlaThrLeuThrThrGlyValCysAlaThrAlaPheAlaTh : 202 ||| !||| ! !:!! !! ! !..!||||||||| !! !..!|||! !!. PheAlaGlnValLeuSerLeuTyrHisValGlyValCysTyrIleCysPheAspAs 1702008 : TTTGCACAGGTTCTGTCTTTGTACCACGTTGGTGTATGTTACATTTGCTTCGACAA : 1702062 203 : rPheLeuPheThrIleAsnLeuTyrAlaThrGlyGlnPheLysIleLeuGlnGlnA : 221 !.!!|||! ! !!!:||||||:!!|||.!! !||||||:::||||||||| ! | nLeuLeuCysLeuMetAsnLeuHisAlaAlaThrGlnPheArgIleLeuGlnTyrA 1702063 : CCTTTTGTGTTTGATGAACCTGCACGCGGCTACTCAATTTCGTATACTGCAATACA : 1702119 222 : rgLeuGluSer<-><->SerCysGlnValTyrAsnIleGluLysIleLysSerVal : 237 |||||..!!:! ..! .!. ! ! .!.:!!!!: ! ! !:!!||| ! rgLeuSerAsnLeuGlyAspThrAsnArgLysGlnValAspAspAsnGluSerSer 1702120 : GGTTATCGAACTTGGGTGATACGAACAGGAAGCAAGTAGATGACAATGAATCCAGC : 1702173 238 : GluGlnIleAsnLeuIleAlaGluGluSerTyrAlaAsnLeuArgLysCysValGl : 256 ! ! :!:::!! !.!!||||||.!.!!!||| ! !!!!:!!!.||||||.. AlaAlaLeuSerArgPheAlaGluAsnCysTyrLysAlaPheLysAsnCysValAr 1702174 : GCAGCTCTGTCTCGTTTCGCGGAGAACTGTTATAAGGCGTTTAAAAATTGCGTACG : 1702230 257 : uLeuHisAsnValLeuLeuLysTyrIleThrArgLeuGluAsnLeuTyrCysGlnI : 275 !! !|||.!. !! !:!!! !||| ! !||||||.!..!.:!!!:! | gGlnHisGlnAsnHisIleThrTyrCysHisArgLeuAsnGluIlePheThrValI 1702231 : ACAACATCAGAATCATATCACGTACTGTCACAGATTGAACGAAATATTCACGGTCA : 1702287 276 : leMetLeuValGluThrLeuAlaCysValPheLeuIleCysThrThrGlyPheGln : 293 ||:!:|||! !.!.! !|||!.!! ! !.!!||||||||| !..!||||||||| leValLeuGlyHisIleLeuValPheSerLeuLeuIleCysLeuValGlyPheGln 1702288 : TTGTACTCGGACACATACTTGTCTTCAGCCTTCTGATATGTCTGGTTGGATTCCAA : 1702341 294 : IleValLeu : 296 :!::!!:!! ValLeuVal 1702342 : GTGCTCGTG : 1702352 vulgar: gi|861722426|gb|AKO89978.1| 183 296 . KQ414915.1 1702007 1702352 + 132 M 41 123 G 0 6 M 72 216 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1702008 1702352 132 + . gene_id 7 ; sequence gi|861722426|gb|AKO89978.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1702008 1702352 . + . KQ414915.1 exonerate:protein2genome:local exon 1702008 1702352 . + . insertions 6 ; deletions 0 KQ414915.1 exonerate:protein2genome:local similarity 1702008 1702352 132 + . alignment_id 7 ; Query gi|861722426|gb|AKO89978.1| ; Align 1702008 184 123 ; Align 1702137 225 216 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722426|gb|AKO89978.1| odorant receptor 14 [Microplitis mediator] Target: KQ414915.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold718, whole genome shotgun sequence Model: protein2genome:local Raw score: 129 Query range: 310 -> 390 Target range: 1682577 -> 1682814 311 : TyrPheCysCysLeuValThrGlnLeuLeuLeuTyrSerTrpSerCysHisGluIl : 329 |||||| ! !! !|||! |||:::...||| ::: !:!|||:!!!!:|| TyrPheLeuGlyGlyValIleGlnIlePheLeuIleThrLeuAsnCysAsnAspIl 1682578 : TACTTTCTCGGTGGAGTGATacagatatttttaataacccTAAATTGCAACGACAT : 1682632 330 : eIleIleGluSerLeuGluValAlaGluAlaAlaTyrArgAlaTyrTrpTyrSerL : 348 |!!: :!!||| !! :!!!.! !||| !|||!!!..! !!||| ! !!! eMetGluGlnSerGlyAlaIleGlyThrAlaIleTyrSerCysAsnTrpGluArgA 1682633 : AATGGAGCAAAGTGGCGCTATAGGAACAGCGATCTACAGTTGTAATTGGGAGAGGA : 1682689 349 : euSerTrpSerLysTyrGlyLysSerPheArgGlnAlaLeuLeuIleIleIleThr : 366 :::::: ::: ..!||||||:!!! !:!!:!!|||:!!!!:..! snValTyrAsnHisPhe---TyrGlnPheArgLysAspMetMetIleValMetVal 1682690 : Atgtttataatcatttt---taccAGTTCAGAAAGGATATGATGATTGTAATGGTA : 1682740 367 : ArgSerArgArgProCysValLeuThrValGlyLysPheValProMetSerLeuGl : 385 |||:!!!:!||||||||| !:!!:!!!.!!.!|||||| !!|||!!:|||||||| ArgAlaLysArgProCysTyrIleSerAlaAlaLysPhePheProIleSerLeuGl 1682741 : CGAGCGAAACGTCCTTGCTACATTTCAGCAGCGAAATTCTTTCCAATCTCCCTTGA : 1682797 386 : uThrPheThrAlaVal : 390 |:!!|||||| ||| uSerPheThrLysVal 1682798 : ATCGTTCACGAaggta : 1682814 vulgar: gi|861722426|gb|AKO89978.1| 310 390 . KQ414915.1 1682577 1682814 + 129 M 43 129 G 1 0 M 36 108 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414915.1 exonerate:protein2genome:local gene 1682578 1682814 129 + . gene_id 8 ; sequence gi|861722426|gb|AKO89978.1| ; gene_orientation . KQ414915.1 exonerate:protein2genome:local cds 1682578 1682814 . + . KQ414915.1 exonerate:protein2genome:local exon 1682578 1682814 . + . insertions 0 ; deletions 1 KQ414915.1 exonerate:protein2genome:local similarity 1682578 1682814 129 + . alignment_id 8 ; Query gi|861722426|gb|AKO89978.1| ; Align 1682578 311 129 ; Align 1682707 355 108 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: gi|861722426|gb|AKO89978.1| odorant receptor 14 [Microplitis mediator] Target: KQ414940.1 Habropoda laboriosa isolate 0110345459 unplaced genomic scaffold scaffold801, whole genome shotgun sequence Model: protein2genome:local Raw score: 112 Query range: 306 -> 406 Target range: 807308 -> 807593 307 : ArgSerAlaLeuTyrPheCysCysLeuValThrGlnLeuLeuLeuTyrSerTrpSerC : 326 |||||| !:!! .!. !|||:!!! !||||||! !||||||:!!!:::!! ArgSerPheValLeuMetValThrLeuLeuIleGlnLeuTyrLeuTyrAlaTyrAlaG 807309 : AGGAGCTTCGTTCTGATGGTGACTTTGCTGATTCAGCTGTACCTTTACGCCTACGCGG : 807366 327 : ysHisGluIleIleIleGluSerLeuGluValAlaGluAlaAlaTyrArgAlaTyrTr : 345 !!:!! !:!! ..!!!! !|||:!!|||:!!||||||||| !:!! !|| lyAsnThrLeuGluSerArgThrGluGluIleAlaGlnAlaAlaTyrAspSerLeuTr 807367 : GCAACACACTCGAGTCGCGAACCGAAGAAATTGCACAAGCCGCCTATGACTCTCTTTG : 807423 346 : pTyrSerLeuSerTrpSerLysTyrGlyLysSerPheArgGlnAlaLeuLeuIleIle : 364 |||| !!! ! :!!||| ! :!! !|||.!. !|||||| ||| pTyrArgCys------------HisGlyHisAlaAlaArgAspLeuLeuLeu---Ile 807424 : GTACCGTTGC------------CACGGGCACGCAGCCAGAGATCTCCTTTTG---ATC : 807465 365 : IleThrArgSerArgArgProCysValLeuThrValGlyLysPheValProMetSerL : 384 ||| !|||.!!!.! !|||! ! !:!!|||!.!||||||||||||||||||!:!| IleHisArgGlyAsnSerProTyrArgIleThrAlaGlyLysPheValProMetAsnL 807466 : ATCCATCGAGGAAATTCGCCTTATCGTATAACAGCCGGAAAATTCGTCCCGATGAATC : 807525 385 : euGluThrPheThrAlaValPheAsnSerAlaLeuSerTyrPheThrIleLeuArgGl : 403 || ||||||! !! !:!!.!.!!.:!!:!! !||||||.!.:!!:!!:!!!:! euPheThrPheLysGluIleLeuLysAlaSerGlySerTyrLeuSerValMetLysVa 807526 : TTTTCACTTTCAAGGAGATACTGAAAGCTTCTGGCTCGTATCTGTCTGTAATGAAGGT : 807582 404 : nMetThrGlu : 406 !|||! !!!: lMetMetAsp 807583 : AATGATGGAC : 807593 vulgar: gi|861722426|gb|AKO89978.1| 306 406 . KQ414940.1 807308 807593 + 112 M 42 126 G 4 0 M 10 30 G 1 0 M 43 129 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2015-09-17 ##type DNA # # # seqname source feature start end score strand frame attributes # KQ414940.1 exonerate:protein2genome:local gene 807309 807593 112 + . gene_id 1 ; sequence gi|861722426|gb|AKO89978.1| ; gene_orientation . KQ414940.1 exonerate:protein2genome:local cds 807309 807593 . + . KQ414940.1 exonerate:protein2genome:local exon 807309 807593 . + . insertions 0 ; deletions 5 KQ414940.1 exonerate:protein2genome:local similarity 807309 807593 112 + . alignment_id 1 ; Query gi|861722426|gb|AKO89978.1| ; Align 807309 307 126 ; Align 807435 353 30 ; Align 807465 364 129 # --- END OF GFF DUMP --- # -- completed exonerate analysis